Raw file Scan number Retention time Ion injection time Total ion current Collision energy Summations Base peak intensity Elapsed time Identified Matched Reverse MS/MS IDs Sequence Length Filtered peaks m/z Mass Charge MS2 m/z Type Fragmentation Mass analyzer Parent intensity fraction Fraction of total spectrum Base peak fraction Precursor full scan number Precursor intensity Precursor apex fraction Precursor apex offset Precursor apex offset time Scan event number Modifications Modified sequence Proteins Score PEP Experiment MS3 scan numbers Reporter PIF Reporter fraction DN sequence DN length DN min levenshtein distance DN extension sequence DN extended DN complete DN raw score DN extension score DN extension norm. score DN normalized score DN complete score DN combined score DN nterm mass DN cterm mass DN missing mass DN nterm delta score DN cterm delta score DN term delta score DN full length delta score DN protease score DN complement score DN A2 score DN water loss score DN ammonia loss score DN agrees with andromeda DN agrees with andromeda complete DN all sequences DN all scores DN all agrees DN any agrees DN number of steps DN is dominantly y Intens Comp Factor CTCD Comp RawOvFtT AGC Fill Scan index MS scan index MS scan number 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4 12.019 NaN 32329 35 0 7175.9 0.412 + 31247 VVRLVVHGIC 10 28 547.8286123964006 NaN 0 547.8425903320312 PEAK HCD FTMS 0 0 0 3 1395.3082275390625 0.930069622804937 -1 0.007221221923828125 1 Unmodified _VVRLVVHGIC_ REV__ENST00000238647.4_1_14:77493146-77493245:-|nuORF 0 0.34018428902965525 1 N 1 -1 6.2591 0 0 0.57231 0 0 528.8347017441698 447.7556246393188 976.5903263834887 0 0 0 0 0 0.3494850021680094 0 0 0 N 0.57231 - 1 + NaN NaN 103645.8 NaN 0 2 3 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8 12.042 NaN 42516 35 0 6640 0.411 + 21150 PPLRKYMLVF 10 31 421.91365561347914 NaN 0 421.8571472167969 PEAK HCD FTMS 0 0 0 7 1309.9794921875 0.7294401949351553 2 -0.015558242797851562 1 Unmodified _PPLRKYMLVF_ ENSG00000182197|ENST00000378204|EXT1 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89365.9 NaN 1 5 7 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20 12.124 NaN 29096 35 0 6765.6 0.411 + 34962 YSPPPPGLPKK 11 26 590.8396946590374 NaN 0 590.8687133789062 PEAK HCD FTMS 0 0 0 19 1974.6600341796875 0.6511897272464221 1 -0.007996559143066406 1 Unmodified _YSPPPPGLPKK_ REV__ENSG00000122257|ENST00000319715|RBBP6;REV__IL4R-RBBP6|2|fusion;REV__IL4R-RBBP6|3|fusion;REV__nc|ENSG00000122257|Q7Z6E9-2|RBBP6;REV__nc|ENSG00000122257|Q7Z6E9-4|RBBP6 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97979.2 NaN 2 16 19 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26 12.162 NaN 39634 35 0 5577.3 0.411 -1 HGCCLFWHF 9 30 421.84431705157476 NaN 0 421.8330383300781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _HGC(Carbamidomethyl (C))C(Carbamidomethyl (C))LFWHF_ ENST00000258243.6_1_1:229762064-229763409:+|nuORF 0 0.29524684227089293 1 C 1 -1 0.088644 0 0 0.010532 0 0 438.75093771467454 296.8912447565063 735.6421824711808 0 0 0 0 0 0 0 0 0 C 0.010532 + + 2 + NaN NaN 92698.1 NaN 3 21 25 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 31 12.192 NaN 27673 35 0 6268.1 0.411 + 23720 RQRPHNFLL 9 22 590.8379822101613 NaN 0 590.8660278320312 PEAK HCD FTMS 0 0 0 30 1354.899658203125 0.3497545427474385 -3 0.022368431091308594 1 Unmodified _RQRPHNFLL_ REV__ENSG00000113555|ENST00000231484|PCDH12 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100313.5 NaN 4 25 30 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 47 12.304 NaN 39811 35 0 5033.6 0.411 -1 0 34 421.32163600895234 NaN 0 421.3286437988281 PEAK HCD FTMS 0 0 0 46 4144.44140625 0.6798959819903762 -1 0.0073680877685546875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98032.8 NaN 5 40 46 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 64 12.423 NaN 39174 35 0 6591.7 0.327 + -1 RHSRVELR 8 23 547.8101590877944 NaN 0 547.8428344726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RHSRVELR_ REV__ENST00000265109.7_1_5:34824408-34824441:+|nuORF 0.7936320650641473 0.38822285293237185 1 T 1 -1 3.9794 0 0 0.36388 0 0 156.43317110352 833.0808199518186 989.5139910553387 0 0 0 0 0 0 0 0 0 T 0.36388 - 1 + NaN NaN 96156.2 NaN 6 56 63 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 65 12.427 NaN 56899 35 0 9027.5 0.263 -1 0 35 421.3217876628786 NaN 0 421.3287048339844 PEAK HCD FTMS 0 0 0 63 4076.19921875 0.5808761248224001 6 -0.04698944091796875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95780 NaN 7 56 63 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 83 12.551 NaN 38792 35 0 9552.1 0.327 -1 0 27 421.3217876628786 NaN 0 421.32867431640625 PEAK HCD FTMS 0 0 0 82 4265.9111328125 0.6079108980411287 22 -0.17238998413085938 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101377.5 NaN 8 73 82 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 84 12.555 NaN 47741 35 0 8438.5 0.261 -1 EMQCCRVQRCL 11 27 494.8848511441468 NaN 0 494.88482666015625 PEAK HCD FTMS 0 0 0 82 4649.978515625 0.5442347663337762 -15 0.11071205139160156 2 2 Carbamidomethyl (C) _EMQC(Carbamidomethyl (C))C(Carbamidomethyl (C))RVQRCL_ ENST00000432062.1_1_X:129063778-129063838:-|nuORF 0.5059551277355931 0.3406848944787997 1 A 1 -1 0.9691 0 0 0.098111 0 0 441.0129141029436 472.6771639459594 913.690078048903 0 0 0 0 0 0 0 0 0 A 0.098111 - 2 + NaN NaN 108995.9 NaN 9 73 82 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 92 12.61 NaN 89828 35 0 63375 0.327 + 11927 KFIFDILFFK 10 22 439.92482638819325 NaN 0 439.8663024902344 PEAK HCD FTMS 0 0 0 91 1489.621337890625 0.9475585976324892 1 -0.009899139404296875 1 Unmodified _KFIFDILFFK_ REV__ENSG00000075240|ENST00000406902|GRAMD4 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88571.1 NaN 10 80 91 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 93 12.614 NaN 51842 35 0 12463 0.261 + 2029 DDPYYGPY 8 27 495.19866598567825 NaN 0 495.3891296386719 PEAK HCD FTMS 0 0 0 91 4276.8291015625 0.9318552075962573 1 -0.009899139404296875 2 Unmodified _DDPYYGPY_ REV__ENSG00000115665|ENST00000264047|SLC5A7 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89472.2 NaN 11 80 91 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 124 12.834 NaN 90155 35 0 23787 0.411 + 7268 FTCKSCGR 8 34 451.20463306019656 NaN 0 451.3623046875 PEAK HCD FTMS 0 0 0 123 1293.14404296875 0.6956130835279193 1 -0.008043289184570312 1 Unmodified _FTCKSCGR_ ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;nc|ENSG00000115648|Q9BV36-2|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-5|MLPH 0.7936320650641473 0.38822285293237185 1 M 1 8 0.48455 0 0 0.053815 0 0 413.5271117241056 352.80637537174067 766.3334870958463 0 0 0 0 0 0 0 0 0 M 0.053815 - 1 + NaN NaN 107307 NaN 12 110 123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 152 13.034 NaN 111980 35 0 88414 0.327 + 28652 TRSRAKDDIKK 11 19 439.9245544591416 NaN 0 439.8665466308594 PEAK HCD FTMS 0 0 0 151 2483.308349609375 0.7243526628759496 -8 0.059037208557128906 1 Unmodified _TRSRAKDDIKK_ ENSG00000099385|ENST00000215115|BCL7C;ENSG00000106635|ENST00000223368|BCL7B;ENST00000455335.2_1_7:72971818-72971908:-|nuORF;nc|ENSG00000099385|Q8WUZ0-2|BCL7C;nc|ENSG00000106635|Q9BQE9-3|BCL7B;nc|ENSG00000106635|Q9BQE9-4|BCL7B 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95812.1 NaN 13 137 151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 153 13.039 NaN 46638 35 0 10460 0.261 + 18493 MRHCWGPC 8 18 495.1987422970343 NaN 0 495.3891906738281 PEAK HCD FTMS 0 0 0 151 4346.04345703125 0.7898514521124831 4 -0.032189369201660156 2 Unmodified _MRHCWGPC_ nc|ENSG00000148840|Q5VV67-2|PPRC1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82624.9 NaN 14 137 151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 182 13.243 NaN 25937 35 0 6133.7 0.411 + 20477 PCARGWGGGGA 11 25 494.72443490745115 NaN 0 494.7243347167969 PEAK HCD FTMS 0 0 0 181 3274.08447265625 0.6827147250101359 1 -0.007999420166015625 1 Unmodified _PCARGWGGGGA_ REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF 0 0.34212014346876374 1 D 1 -1 1.9897 0 0 0.2015 0 0 492.5849954479117 376.8068026178344 869.3917980657461 0 0 0 0 0 0 0 0 0 D 0.2015 - 3 + NaN NaN 112882.5 NaN 15 165 181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 184 13.251 NaN 24597 35 0 5804.9 0.326 + 33058 YDFLSRMYA 9 17 583.2709750984632 1164.5273972637262 2 583.7708129882812 MULTI HCD FTMS 0 0 0 183 10106.439453125 0.8391698335906362 21 -0.1625385284423828 1 Unmodified _YDFLSRMYA_ REV__ENSG00000078237|ENST00000179259|TIGAR 0 0.3510170533115441 1 H 1 -1 5.4846 0 0 0.47097 0 0 820.4394894041544 204.00293909244377 1024.4424284965983 0 0 0 0 0 0 0 0 0 H 0.47097 - 1 + NaN NaN 109197.5 NaN 16 166 183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 185 13.256 NaN 24764 35 0 2406.2 0.261 + 21927 QECDCDESHCG 11 18 613.1809142403802 NaN 0 613.1832885742188 PEAK HCD FTMS 0 0 0 183 7341.896484375 0.5985526019328895 -2 0.015420913696289062 2 Unmodified _QECDCDESHCG_ REV__ENSG00000166930|ENST00000300190|MS4A5 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86988.4 NaN 17 166 183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 187 13.261 NaN 25006 35 0 3172.7 0.411 + 21928 QECDCDESHCG 11 28 613.1809142403802 NaN 0 613.1810302734375 PEAK HCD FTMS 0 0 0 186 7094.8193359375 0.578409486269224 -1 0.009945869445800781 1 Unmodified _QECDCDESHCG_ REV__ENSG00000166930|ENST00000300190|MS4A5 0 0.34212014346876374 1 D 1 -1 6.1536 0 0 0.5026 0 0 611.609862072754 494.68342004947505 1106.2932821222291 0 0 0 0 0 0 0 0.3054621874040891 0 D 0.5026 + + 2 + NaN NaN 86335.3 NaN 18 167 186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 197 13.329 NaN 31721 35 0 3597.4 0.411 + 21929 QECDCDESHCG 11 36 613.1809142403802 NaN 0 613.179443359375 PEAK HCD FTMS 0 0 0 196 8817.75 0.718872462575047 8 -0.06325912475585938 1 Unmodified _QECDCDESHCG_ REV__ENSG00000166930|ENST00000300190|MS4A5 0 0.34212014346876374 1 D 1 -1 3.9794 0 0 0.32502 0 0 611.6082141235353 494.68174158267817 1106.2899557062135 0 0 0 0 0 0 0 0 0 D 0.32502 + + 2 + NaN NaN 105306 NaN 19 176 196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 202 13.359 NaN 15139 35 0 3498.2 0.411 + 33059 YDFLSRMYA 9 16 583.2709750984632 1164.5273972637262 2 583.77001953125 MULTI HCD FTMS 0 0 0 201 7444.3193359375 0.6181255275222161 35 -0.2693605422973633 1 Unmodified _YDFLSRMYA_ REV__ENSG00000078237|ENST00000179259|TIGAR 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81292.1 NaN 20 180 201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 205 13.374 NaN 45968 35 0 17927 0.327 + -1 YDCKPCNYM 9 17 403.81706737382837 NaN 0 403.81695556640625 PEAK HCD FTMS 0 0 0 204 10394.4482421875 0.5425686313510322 11 -0.0874185562133789 1 Carbamidomethyl (C),Oxidation (M) _YDC(Carbamidomethyl (C))KPCNYM(Oxidation (M))_ REV__ENSG00000215421|ENST00000299687|ZNF407;REV__nc|ENSG00000215421|Q9C0G0-2|ZNF407 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92398.3 NaN 21 182 204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 206 13.379 NaN 23451 35 0 4594.8 0.261 + 33060 YDFLSRMYA 9 17 583.2709750984632 1164.5273972637262 2 583.7711181640625 MULTI HCD FTMS 0 0 0 204 9070.669921875 0.753166592863898 37 -0.2838907241821289 2 Unmodified _YDFLSRMYA_ REV__ENSG00000078237|ENST00000179259|TIGAR 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91809.2 NaN 22 182 204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 213 13.421 NaN 28124 35 0 2821 0.411 + 21930 QECDCDESHCG 11 33 613.1809142403802 NaN 0 613.1827392578125 PEAK HCD FTMS 0 0 0 212 8120.89404296875 0.6620608544107028 20 -0.15262794494628906 1 Unmodified _QECDCDESHCG_ REV__ENSG00000166930|ENST00000300190|MS4A5 0 0.34212014346876374 1 D 1 -1 4.6041 0 0 0.37604 0 0 611.619383557129 494.6822603815063 1106.3016439386354 0 0 0 0 0 0 0 0 0 D 0.37604 + + 2 + NaN NaN 93667.2 NaN 23 188 212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 226 13.513 NaN 24684 35 0 3487.6 0.411 + -1 IYEHCSLFP 9 24 583.2709750984632 1164.5273972637262 2 583.2723999023438 MULTI HCD FTMS 0 0 0 225 9999.2607421875 0.9358138682148707 -19 0.1466207504272461 1 Carbamidomethyl (C) _IYEHC(Carbamidomethyl (C))SLFP_ REV__ENSG00000165899|ENST00000547103|OTOGL 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92120.2 NaN 24 200 225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 232 13.551 NaN 35707 35 0 4935.4 0.411 + 23917 RTLGRFMMI 9 26 562.8070786265365 NaN 0 562.8077392578125 PEAK HCD FTMS 0 0 0 231 5221.56640625 0.6798365229148468 1 -0.007975578308105469 1 Unmodified _RTLGRFMMI_ ENST00000417507.6_1_12:102542116-102542152:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89848.1 NaN 25 205 231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 239 13.596 NaN 23052 35 0 5145 0.327 -1 CFSVLLVW 8 18 512.2708114366687 NaN 0 512.2709350585938 PEAK HCD FTMS 0 0 0 238 5389.9111328125 0.6724990945342769 -7 0.052341461181640625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))FSVLLVW_ ENST00000563328.4_1_16:72821841-72822171:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81650.5 NaN 26 211 238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 240 13.6 NaN 41312 35 0 10275 0.261 + 18611 MVYKKVKKA 9 24 547.8426133441241 NaN 0 547.8435668945312 PEAK HCD FTMS 0 0 0 238 4001.20458984375 0.4836890277554626 -2 0.014728546142578125 2 Unmodified _MVYKKVKKA_ tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84039.2 NaN 27 211 238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 248 13.65 NaN 22018 35 0 2459.2 0.411 + 21931 QECDCDESHCG 11 23 613.1809142403802 NaN 0 613.1814575195312 PEAK HCD FTMS 0 0 0 247 10034.572265625 0.8180746421113223 50 -0.3753185272216797 1 Unmodified _QECDCDESHCG_ REV__ENSG00000166930|ENST00000300190|MS4A5 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91431.2 NaN 28 218 247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 255 13.695 NaN 28928 35 0 5887.9 0.411 + 14764 LHWKMLFH 8 26 556.2973207367685 1110.5800885403369 2 556.2964477539062 MULTI HCD FTMS 0 0 0 254 3711.552978515625 0.7421574532520779 2 -0.016056060791015625 1 Unmodified _LHWKMLFH_ ENST00000470041.5_1_1:206136994-206141493:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89540.6 NaN 29 224 254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 257 13.703 NaN 25062 35 0 2967.7 0.411 -1 QCKLYQYY 8 29 583.2709750984632 1164.5273972637262 2 583.2727661132812 MULTI HCD FTMS 0 0 0 256 8294.287109375 0.7762482751510802 6 -0.04505443572998047 1 Carbamidomethyl (C) _QC(Carbamidomethyl (C))KLYQYY_ ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;nc|ENSG00000085224|P46100-5|ATRX 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103966.9 NaN 30 225 256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 269 13.785 NaN 23259 35 0 3767.2 0.411 -1 YPMVIKCI 8 27 512.2709421461291 NaN 0 512.2698364257812 PEAK HCD FTMS 0 0 0 268 7875.22216796875 0.8817970898236553 -12 0.08984851837158203 1 Carbamidomethyl (C) _YPMVIKC(Carbamidomethyl (C))I_ ENST00000487266.1_1_21:27124491-27124578:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88584 NaN 31 236 268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 271 13.793 NaN 21013 35 0 5008.2 0.411 + 22180 QLEEKLTY 8 21 512.2709421461291 NaN 0 512.271240234375 PEAK HCD FTMS 0 0 0 270 3985.64013671875 0.4462764095643855 -11 0.0817728042602539 1 Unmodified _QLEEKLTY_ nc|ENSG00000258597|P20848|SERPINA2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91249.2 NaN 32 237 270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 290 13.926 NaN 33854 35 0 4727.7 0.411 + 27845 TDENFVQH 8 29 495.2199050825051 NaN 0 495.2198486328125 PEAK HCD FTMS 0 0 0 289 10653.123046875 0.900044305870569 -8 0.05892467498779297 1 Unmodified _TDENFVQH_ REV__ENSG00000149311|ENST00000675843|ATM 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87780.5 NaN 33 255 289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 292 13.935 NaN 27156 35 0 4899.5 0.327 + 21932 QECDCDESHCG 11 21 613.1809667798415 NaN 0 613.1812133789062 PEAK HCD FTMS 0 0 0 291 7181.76171875 0.5356119106310835 -62 0.46532249450683594 1 Unmodified _QECDCDESHCG_ REV__ENSG00000166930|ENST00000300190|MS4A5 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84541.5 NaN 34 256 291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 293 13.939 NaN 34534 35 0 10400 0.262 + 26295 SRPRHPHH 8 25 512.2709421461291 NaN 0 512.271484375 PEAK HCD FTMS 0 0 0 291 2004.3101806640625 0.22442476500562752 6 -0.046950340270996094 2 Unmodified _SRPRHPHH_ ENSG00000135426|ENST00000449076|TESPA1;nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1 0 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 8 3.9794 0 0 0.38917 0 0 332.6989755014394 526.7807711236936 859.479746625133 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.38917 - 1 + NaN NaN 103099 NaN 35 256 291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 309 14.048 NaN 20688 35 0 2303.1 0.411 + 32836 WVGHHVAACW 10 23 583.2715901605474 1164.5286273878946 2 583.2725219726562 MULTI HCD FTMS 0 0 0 308 6733.3525390625 0.5917726307369401 3 -0.02284717559814453 1 Unmodified _WVGHHVAACW_ REV__ENST00000407121.1_1_6:100023791-100023977:+|nuORF 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97637.5 NaN 36 271 308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 316 14.093 NaN 34566 35 0 5976.6 0.411 + 25906 SNRGLHWVR 9 39 562.8071735128173 NaN 0 562.8073120117188 PEAK HCD FTMS 0 0 0 315 5127.24365234375 0.554439084114309 29 -0.2210855484008789 1 Unmodified _SNRGLHWVR_ REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90351.5 NaN 37 277 315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 320 14.116 NaN 20144 35 0 5769.2 0.411 + 8198 GQPRKYFQ 8 26 512.2708326741871 NaN 0 512.2706909179688 PEAK HCD FTMS 0 0 0 319 8058.736328125 0.8620755721439604 -2 0.014926910400390625 1 Unmodified _GQPRKYFQ_ REV__sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88748.5 NaN 38 280 319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 322 14.124 NaN 27903 35 0 9178 0.411 + -1 ICCRPHCCT 9 20 421.8334044704784 NaN 0 421.8215026855469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 4 Carbamidomethyl (C) _IC(Carbamidomethyl (C))C(Carbamidomethyl (C))RPHC(Carbamidomethyl (C))C(Carbamidomethyl (C))T_ REV__CON__Q9BYQ8;REV__ENSG00000212722|ENST00000391415|KRTAP4-9;REV__ENSG00000240871|ENST00000391417|KRTAP4-7 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90487.5 NaN 39 281 321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 337 14.227 NaN 29031 35 0 4623.8 0.411 + 14278 LCWQRKKY 8 17 562.807365281518 NaN 0 562.8078002929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LCWQRKKY_ ENSG00000130270|ENST00000310127|ATP8B3;ENST00000531925.5_1_19:1806419-1810672:-|nuORF;nc|ENSG00000130270|O60423-1|ATP8B3;nc|ENSG00000130270|O60423-3|ATP8B3 0.7936320650641473 0.38822285293237185 1 Y 1 7 3.0989 0 0 0.2758 0 0 374.70468310034204 582.7968233697874 957.5015064701295 0 0 0 0 0 0 0 0 0 + Y 0.2758 + + 1 + NaN NaN 85314.3 NaN 40 295 336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 340 14.243 NaN 18754 35 0 5735.8 0.411 + 23213 RFPRSPYT 8 24 512.2711680031415 NaN 0 512.2708129882812 PEAK HCD FTMS 0 0 0 339 4876.619140625 0.7267104386646909 4 -0.031050682067871094 1 Unmodified _RFPRSPYT_ REV__ENST00000529480.1_1_11:57449153-57457721:+|nuORF 2.0597508629832335 0.38822285293237185 1 N 1 -1 3.4949 0 0 0.34179 0 0 510.710596649058 394.74582849674067 905.4564251457987 0 0 0 0 0 0 0 0 0 N 0.34179 - 1 + NaN NaN 98200.5 NaN 41 297 339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 343 14.259 NaN 21994 35 0 5675.9 0.411 -1 VRRGRRRP 8 13 547.8423857258938 NaN 0 547.8414916992188 PEAK HCD FTMS 0 0 0 342 5564.08935546875 0.7140916744100588 -21 0.15787601470947266 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VRRGRRRP_ ENST00000170168.8_1_19:1848414-1848447:-|nuORF 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82265.1 NaN 42 299 342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 350 14.303 NaN 25732 35 0 3655.1 0.411 -1 0 23 482.25207249104363 962.4895920488873 2 482.25140380859375 MULTI HCD FTMS 0 0 0 349 7178.6005859375 0.618720856819093 1 -0.010284423828125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89542.7 NaN 43 305 349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 353 14.321 NaN 25711 35 0 7024.7 0.411 + 23818 RRRQRLLF 8 25 572.864418110297 NaN 0 572.8643188476562 PEAK HCD FTMS 0 0 0 352 5503.3369140625 0.423327948289153 -15 0.11577510833740234 1 Unmodified _RRRQRLLF_ REV__ENSG00000237441|ENST00000497454|RGL2;REV__ENST00000483151.5_1_6:33259881-33261471:-|nuORF 0.6903765706972694 0.38822285293237185 1 V 1 -1 1.2591 0 0 0.11009 0 0 571.8999655157128 469.7254732721313 1041.6254387878441 0 0 0 0 0 0 0 0 0 V 0.11009 - 1 + NaN NaN 90927 NaN 44 307 352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 363 14.388 NaN 19568 35 0 5748.5 0.411 + 8638 HERLQVQN 8 20 512.2709232874573 NaN 0 512.2713012695312 PEAK HCD FTMS 0 0 0 362 4353.0185546875 0.4851206159754595 -8 0.05908775329589844 1 Unmodified _HERLQVQN_ ENSG00000253649|ENST00000647727|PRSS51;nc|ENSG00000253649|A0A1B0GVH4|PRSS51 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103380 NaN 45 316 362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 366 14.404 NaN 11376 35 0 1832.5 0.411 + 8678 HFLLIWSHF 9 17 600.3237915039062 NaN 0 600.3237915039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _HFLLIWSHF_ REV__nc|nan|O96002|CXorf1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83018.8 NaN 46 318 365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 368 14.412 NaN 31858 35 0 5155.6 0.411 + -1 FMMLIESS 8 28 495.2199041224512 NaN 0 495.21978759765625 PEAK HCD FTMS 0 0 0 367 9389.7373046875 0.766215240135879 -3 0.02351856231689453 1 2 Oxidation (M) _FM(Oxidation (M))M(Oxidation (M))LIESS_ REV__ENSG00000108395|ENST00000262294|TRIM37;REV__ENST00000582852.1_1_17:57141714-57157166:-|nuORF;REV__nc|ENSG00000108395|O94972-2|TRIM37;REV__nc|ENSG00000108395|O94972-3|TRIM37 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92425.9 NaN 47 319 367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 372 14.435 NaN 28806 35 0 4492.6 0.411 + 677 APSRNYIYK 9 30 556.2967175985152 NaN 0 556.2970581054688 PEAK HCD FTMS 0 0 0 371 1965.5115966796875 0.2822163273415926 9 -0.06785297393798828 1 Unmodified _APSRNYIYK_ REV__ENSG00000105819|ENST00000249269|PMPCB;REV__ENST00000444457.5_1_7:102938385-102969496:+|nuORF;REV__ENST00000453466.1_1_7:102939135-102952715:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83502.9 NaN 48 322 371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 375 14.45 NaN 79647 35 0 10323 0.411 -1 SAVKGDEKM 9 39 490.73952978203386 979.4645066308677 2 490.739501953125 MULTI HCD FTMS 0 0 0 374 20633.328125 0.855044519236038 -1 0.0075359344482421875 1 Oxidation (M) _SAVKGDEKM(Oxidation (M))_ ENSG00000117751|ENST00000311772|PPP1R8 10.799506525563784 0.2670509983294061 1 EK{M(Oxidation (M))|F} 3 -1 33.698 0 0 3.4404 0 0 557.2800794480218 0 557.2800794480218 0 33.697887582883936 0 0 0 0.75 0 0 0 EK{M(Oxidation (M))|F} 3.4404 + + 9 NaN NaN 112411.7 NaN 49 324 374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 385 14.517 NaN 39613 35 0 3945.6 0.411 -1 SADAGRQTM 9 29 476.71135158487385 951.4081502365477 2 476.7108154296875 MULTI HCD FTMS 0 0 0 384 19052.65625 0.9712467952706907 -1 0.00736236572265625 1 Oxidation (M) _SADAGRQTM(Oxidation (M))_ ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1 28.494509381512117 0.11816142465008336 1 {[SA]|[TG]}DA 4 -1 34.253 0 0 3.6002 0 0 0 604.2517818442777 604.2517818442777 9.035984316004217 0 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {[SA]|[TG]}DA 3.6002 + + 22 + NaN NaN 89508.1 NaN 50 333 384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 387 14.525 NaN 25858 35 0 5919.3 0.411 + 11883 KFFLRMWP 8 17 562.8071571623137 NaN 0 562.8074340820312 PEAK HCD FTMS 0 0 0 386 3912.76904296875 0.5995160988047237 7 -0.053839683532714844 1 Unmodified _KFFLRMWP_ REV__ENSG00000144821|ENST00000693548|MYH15;REV__ENST00000478998.5_1_3:108124174-108178278:-|nuORF;REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87519.9 NaN 51 334 386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 392 14.556 NaN 16635 35 0 3240.4 0.411 + 16516 LTIPKSCYPCE 11 19 627.2987317469981 NaN 0 627.2990112304688 PEAK HCD FTMS 0 0 0 391 1698.221923828125 0.32472737933568274 9 -0.0692758560180664 1 Unmodified _LTIPKSCYPCE_ REV__ENSG00000115392|ENST00000233741|FANCL;REV__nc|ENSG00000115392|Q9NW38-2|FANCL 1.0714618166137932 0.3390807148598227 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91909 NaN 52 338 391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 395 14.571 NaN 26636 35 0 5231.7 0.411 + 19524 NRTTMEVQQA 10 29 589.2851066242041 NaN 0 589.2850952148438 PEAK HCD FTMS 0 0 0 394 1703.586669921875 0.25630156138499915 1 -0.008008003234863281 1 Unmodified _NRTTMEVQQA_ ENSG00000112769|ENST00000230538|LAMA4;nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4 1.1933415558491238 0.33916295405077446 1 V 1 9 6.9897 0 0 0.59408 0 0 345.1703586568081 729.2938326471311 1074.4641913039393 0 0 0 0 0 0 0 0 0 + V 0.59408 + + 2 + NaN NaN 82457 NaN 53 340 394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 398 14.587 NaN 19031 35 0 6209 0.411 + 28920 TWRAPWLGCS 10 24 588.7841241989796 1175.5536954647591 2 588.7838745117188 MULTI HCD FTMS 0 0 0 397 7126.1083984375 0.6271219331258205 1 -0.007974624633789062 1 Unmodified _TWRAPWLGCS_ REV__ENST00000298260.8_1_13:21729833-21750660:-|nuORF;REV__ENST00000314759.5_1_13:21746799-21750660:-|nuORF;REV__ENST00000462482.1_1_13:21729288-21750660:-|nuORF 1.4819007175156935 0.4674597685733628 1 AH 2 -1 7.9588 0 0 0.67703 0 0 443.2360207594841 521.2002047174436 964.4362254769278 0 0 0 0 0 0 0 0 0 AH 0.67703 - 4 + NaN NaN 90903.9 NaN 54 342 397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 403 14.617 NaN 27022 35 0 4264.7 0.411 + 31149 VTYEMDHG 8 23 476.19818381106666 NaN 0 476.1981201171875 PEAK HCD FTMS 0 0 0 402 3699.750732421875 0.4693473701867531 -6 0.04579639434814453 1 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101524 NaN 55 346 402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 406 14.632 NaN 28606 35 0 4375.8 0.327 + 12085 KKFQDWYY 8 23 589.2852783203125 NaN 0 589.2852783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKFQDWYY_ ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81114 NaN 56 348 405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 407 14.637 NaN 33977 35 0 10903 0.261 + 23244 RGHHPTPRPG 10 15 556.2970246204623 1110.5794963077244 2 556.2966918945312 MULTI HCD FTMS 0 0 0 405 4552.16357421875 1 0 0 2 Unmodified _RGHHPTPRPG_ ENST00000396388.2_1_19:54697066-54697171:+|nuORF 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89854.8 NaN 57 348 405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 409 14.642 NaN 14027 35 0 6267.9 0.411 + 32861 WWRRRRGDG 9 9 622.8287235460805 NaN 0 622.8291015625 PEAK HCD FTMS 0 0 0 408 5312.30908203125 0.4344607222210686 110 -0.8479328155517578 1 Unmodified _WWRRRRGDG_ ENST00000477886.5_1_7:102004543-102004654:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81916 NaN 58 349 408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 413 14.665 NaN 23839 35 0 5854.5 0.411 + -1 GFWPCVCCFCF 11 27 513.8607977022136 NaN 0 513.8612060546875 PEAK HCD FTMS 0 0 0 412 4741.68310546875 0.918188042259675 -2 0.01490020751953125 1 4 Carbamidomethyl (C) _GFWPC(Carbamidomethyl (C))VC(Carbamidomethyl (C))C(Carbamidomethyl (C))FC(Carbamidomethyl (C))F_ REV__L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|39|3|anti-sense 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90246 NaN 59 352 412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 415 14.673 NaN 25361 35 0 4105.1 0.411 + 29741 VDSDAADTAS 10 23 476.19818381106666 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 414 1795.4383544921875 0.22776785004153896 1 -0.008034706115722656 1 Unmodified _VDSDAADTAS_ ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-CASZ1|1|fusion;OBSCN-KRT17|1|fusion;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85877.2 NaN 60 353 414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 420 14.703 NaN 33455 35 0 5570.6 0.327 + 28066 TGRKGLTER 9 23 509.29355378108573 1016.5725546289715 2 509.2933654785156 MULTI HCD FTMS 0 0 0 419 12903.927734375 0.9552391784476724 -5 0.03827476501464844 1 Unmodified _TGRKGLTER_ ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ;POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 1.6526216038709556 0.33848895094777925 1 R 1 8 16.99 0 0 1.6713 0 0 842.460568400259 0 842.460568400259 0 16.989700043360187 0 0 0 0 0 0 0 + R 1.6713 + + 1 + NaN NaN 89366.4 NaN 61 357 419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 421 14.708 NaN 31690 35 0 6551.8 0.261 + -1 WCCPLGLC 8 25 476.19818381106666 NaN 0 476.1972961425781 PEAK HCD FTMS 0 0 0 419 1585.133544921875 0.20108875286764943 5 -0.04378795623779297 2 Carbamidomethyl (C) _WCCPLGLC(Carbamidomethyl (C))_ REV__ENSG00000170634|ENST00000607452|ACYP2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86816.1 NaN 62 357 419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 422 14.711 NaN 14340 35 0 4783.7 0.261 + 35568 YYICCVLYTL 10 12 627.2987615554704 NaN 0 627.2994995117188 PEAK HCD FTMS 0 0 0 419 1613.597900390625 0.3413955503111989 9 -0.07596302032470703 3 Unmodified _YYICCVLYTL_ REV__ENST00000321250.12_1_8:29964347-29964383:+|nuORF 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83342.5 NaN 63 357 419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 425 14.724 NaN 29409 35 0 5254.2 0.411 -1 CCQNMKEKF 9 25 420.84318745755314 NaN 0 420.8428649902344 PEAK HCD FTMS 0 0 0 424 6718.95458984375 0.5844676587703073 13 -0.09984493255615234 1 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))QNM(Oxidation (M))KEKF_ ENSG00000166148|ENST00000299178|AVPR1A 0.235843874597859 0.29410397576755687 1 T 1 -1 1.5938 0 0 0.18981 0 0 612.484930357686 123.11790643863515 735.6028367963212 0 0 0 0 0 0 0 0 0 T 0.18981 - 1 + NaN NaN 87474 NaN 64 359 424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 430 14.755 NaN 35983 35 0 4409.2 0.326 + 3182 ECHPKPTQR 9 28 548.2716512307964 NaN 0 548.2715454101562 PEAK HCD FTMS 0 0 0 429 3815.194091796875 0.6039737729025051 -1 0.0073680877685546875 1 Unmodified _ECHPKPTQR_ ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant 1.4819007175156935 0.28806575819904134 1 C{I|L} 2 8 7.9588 0 0 0.72714 0 0 313.5943756043676 561.8225191705686 875.4168947749363 0 0 0 0 0 0 0 0 0 C{I|L} 0.72714 - 3 + NaN NaN 81216.9 NaN 65 363 429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 431 14.759 NaN 36765 35 0 9043.9 0.261 + 34034 YMVGIVIY 8 20 479.2591478684465 956.5037428036931 2 479.259033203125 MULTI HCD FTMS 0 0 0 429 5878.2978515625 0.6389025574880761 -5 0.03795909881591797 2 Unmodified _YMVGIVIY_ REV__ENSG00000163354|ENST00000368424|DCST2;REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91310.4 NaN 66 363 429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 440 14.816 NaN 21360 35 0 4400.2 0.411 + 15932 LPPAPELDWM 10 26 584.7893961097316 NaN 0 584.7879028320312 PEAK HCD FTMS 0 0 0 439 10216.33984375 0.5824281224153666 106 -0.8148517608642578 1 Unmodified _LPPAPELDWM_ ENSG00000186166|ENST00000334418|CENATAC;ENST00000526463.5_1_11:118881994-118885721:+|nuORF;ENST00000532132.5_1_11:118881994-118886068:+|nuORF;ENST00000580556.5_1_11:118881994-118885036:+|nuORF;ENST00000583842.1_1_11:118882763-118885798:+|nuORF 1.4819007175156935 0.33891598740166873 1 G 1 10 4.6041 0 0 0.39433 0 0 896.4711739559881 211.0500429742797 1107.5212169302679 0 0 0 0 0 0 0 0 0 G 0.39433 - 1 + NaN NaN 86165.4 NaN 67 371 439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 444 14.839 NaN 31671 35 0 5433.6 0.411 + 30889 VQRRITCLH 9 32 563.3188491021486 NaN 0 563.31884765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VQRRITCLH_ ENST00000256689.9_1_12:46753588-46753702:-|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86887.4 NaN 68 374 443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 447 14.855 NaN 27633 35 0 4014.4 0.411 + -1 LTMWGWWVMQW 11 26 513.9005514502668 NaN 0 514.3035888671875 PEAK HCD FTMS 0 0 0 446 1224.052490234375 0.6766926446715734 -2 0.015503883361816406 1 Oxidation (M) _LTM(Oxidation (M))WGWWVMQW_ REV__nc|ENSG00000204580|Q08345-4|DDR1 0.09484139111097674 0.34185110575506755 1 D 1 -1 3.4949 0 0 0.3407 0 0 734.8202851741679 172.9132479303344 907.7335331045023 0 0 0 0 0 0 0 0 0 D 0.3407 - 1 + NaN NaN 93305.3 NaN 69 376 446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 450 14.87 NaN 22311 35 0 4469.9 0.411 + 16102 LPTDTFQYAI 10 22 584.7991723334063 1167.5837917336125 2 584.8009643554688 MULTI HCD FTMS 0 0 0 449 4060.42919921875 0.5107364319112899 2 -0.015542984008789062 1 Unmodified _LPTDTFQYAI_ REV__ENSG00000196235|ENST00000432763|SUPT5H;REV__nc|ENSG00000196235|O00267-2|SUPT5H;REV__SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92200.7 NaN 70 378 449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 454 14.893 NaN 26396 35 0 5080.7 0.411 + 29742 VDSDAADTAS 10 24 476.19818381106666 NaN 0 476.1983337402344 PEAK HCD FTMS 0 0 0 453 5136.732421875 0.6516416991103257 29 -0.2218952178955078 1 Unmodified _VDSDAADTAS_ ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-CASZ1|1|fusion;OBSCN-KRT17|1|fusion;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86297.4 NaN 71 381 453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 457 14.909 NaN 39981 35 0 6105.1 0.411 -1 0 27 511.26414424518504 1020.5137355571701 2 511.26458740234375 MULTI HCD FTMS 0 0 0 456 5061.478515625 0.6384231412027639 -2 0.015542984008789062 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106256.6 NaN 72 383 456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 470 14.998 NaN 18927 35 0 4533.5 0.327 -1 LMWLWLFC 8 16 584.7891574551007 NaN 0 584.7887573242188 PEAK HCD FTMS 0 0 0 469 7894.5947265625 0.4935784639356033 -4 0.029481887817382812 1 Carbamidomethyl (C) _LMWLWLFC(Carbamidomethyl (C))_ ENST00000301923.13_2_22:40726871-40727081:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89798.7 NaN 73 395 469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 471 15.002 NaN 28684 35 0 9802.7 0.261 -1 AMIFWLQV 8 17 512.2708210759955 NaN 0 512.2711181640625 PEAK HCD FTMS 0 0 0 469 1834.486083984375 0.20168594148155036 3 -0.025429725646972656 2 Oxidation (M) _AM(Oxidation (M))IFWLQV_ ENST00000495072.1_1_1:46165678-46165810:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104047.1 NaN 74 395 469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 474 15.015 NaN 27339 35 0 5151.4 0.411 + 11884 KFFLRMWP 8 18 562.8071958506339 NaN 0 562.8074951171875 PEAK HCD FTMS 0 0 0 473 1813.040771484375 0.2679057677222507 -8 0.06165122985839844 1 Unmodified _KFFLRMWP_ REV__ENSG00000144821|ENST00000693548|MYH15;REV__ENST00000478998.5_1_3:108124174-108178278:-|nuORF;REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90814.1 NaN 75 397 473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 477 15.031 NaN 13499 35 0 4113.9 0.411 + 20433 PAFYTHKYGY 10 19 623.79789167212 NaN 0 624.2359619140625 PEAK HCD FTMS 0 0 0 476 3931.49072265625 0.7779117393985195 -2 0.015515327453613281 1 Unmodified _PAFYTHKYGY_ ENSG00000076604|ENST00000262395|TRAF4;ENST00000502593.2_1_5:143131699-143132191:-|nuORF 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83917.6 NaN 76 399 476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 481 15.054 NaN 59606 35 0 7771.1 0.411 + 25243 SASSATQVHK 10 41 508.261981604699 1014.509410276198 2 508.261962890625 MULTI HCD FTMS 0 0 0 480 10970.302734375 0.844927377518666 2 -0.015497207641601562 1 Unmodified _SASSATQVHK_ ENST00000361272.8_2_8:17102747-17104366:-|nuORF 10.150570793230772 0.4161670024087991 1 {[SA]|[TG]}S 3 7 10.458 0 0 1.0308 0 0 0 766.3828829400999 766.3828829400999 10.45757490560675 0 0 0 0 0 0 0 0 + {[SA]|[TG]}S 1.0308 + + 4 + NaN NaN 100312.1 NaN 77 402 480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 486 15.084 NaN 33000 35 0 5290 0.411 -1 MRCFTKLR 8 33 556.2966503186595 NaN 0 556.2964477539062 PEAK HCD FTMS 0 0 0 485 6157.9287109375 0.8237600705596443 -1 0.007367134094238281 1 Carbamidomethyl (C) _MRC(Carbamidomethyl (C))FTKLR_ HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|157|1|anti-sense 0.6903765706972694 0.38822285293237185 1 N 1 -1 4.6041 0 0 0.41457 0 0 423.7902478035315 569.7363375299436 993.5265853334752 0 0 0 0 0 0 0 0 0 N 0.41457 - 1 + NaN NaN 94190.4 NaN 78 406 485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 489 15.099 NaN 28748 35 0 4838.9 0.411 + 29743 VDSDAADTAS 10 24 476.19817502358893 NaN 0 476.1982421875 PEAK HCD FTMS 0 0 0 488 7955.587890625 0.8907400136303136 -15 0.11641311645507812 1 Unmodified _VDSDAADTAS_ ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-CASZ1|1|fusion;OBSCN-KRT17|1|fusion;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96201.3 NaN 79 408 488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 497 15.152 NaN 19331 35 0 4994.8 0.411 + -1 VVTLMKKC 8 18 497.7747032712571 NaN 0 497.77484130859375 PEAK HCD FTMS 0 0 0 496 5860.33935546875 0.954327592831253 -4 0.02946949005126953 1 Carbamidomethyl (C),Oxidation (M) _VVTLM(Oxidation (M))KKC(Carbamidomethyl (C))_ REV__G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76496.6 NaN 80 415 496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 499 15.16 NaN 17034 35 0 3336.9 0.411 + 14925 LLEKIKKMKV 10 17 615.4031982421875 NaN 0 615.4031982421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84115.5 NaN 81 416 498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 501 15.168 NaN 27218 35 0 2423.2 0.411 -1 ESENTSDK 8 30 476.19817502358893 NaN 0 476.19744873046875 PEAK HCD FTMS 0 0 0 500 7018.10009765625 0.7857750630863968 -6 0.04549980163574219 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ESENTSDK_ AREG|p.R126I|1|0.17|ENSG00000109321|chr4:74449113-74449113|G/T|missense_variant;ENSG00000109321|ENST00000395748|AREG 0.6903765706972694 0.38822285293237185 1 G 1 -1 2.4743 0 0 0.26034 0 0 525.2516224087029 365.09101282291255 890.3426352316155 0 0 0 0 0 0 0 0 0 G 0.26034 - 1 + NaN NaN 91654.1 NaN 82 417 500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 505 15.195 NaN 29469 35 0 5684.8 0.411 + 32851 WWFCKKKV 8 26 562.8070898112674 NaN 0 562.8067016601562 PEAK HCD FTMS 0 0 0 504 4101.81103515625 0.5897771830438101 -20 0.15654945373535156 1 Unmodified _WWFCKKKV_ REV__ENSG00000204767|ENST00000377365|INSYN2B 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98993 NaN 83 420 504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 516 15.27 NaN 43764 35 0 13876 0.411 + -1 YKRCSLLM 8 20 543.7755645243247 1085.5365761154494 2 543.7771606445312 MULTI HCD FTMS 0 0 0 515 11843.1064453125 0.06343950283660293 -24 0.18575572967529297 1 Carbamidomethyl (C),Oxidation (M) _YKRC(Carbamidomethyl (C))SLLM(Oxidation (M))_ REV__ENST00000379638.8_1_5:112214131-112214335:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93479.6 NaN 84 430 515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 521 15.3 NaN 10266 35 0 1528.3 0.411 + 21027 PLQLLTQHYH 10 15 625.3382568359375 NaN 0 625.3382568359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PLQLLTQHYH_ REV__ENSG00000021776|ENST00000156471|AQR;REV__ENST00000543879.6_1_15:35148995-35166226:-|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82707.6 NaN 85 434 520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 526 15.33 NaN 29088 35 0 4349 0.411 + 12439 KPYRPKNR 8 28 529.8137660321693 NaN 0 529.8011474609375 PEAK HCD FTMS 0 0 0 525 1209.9219970703125 0.2737734240976318 7 -0.05315971374511719 1 Unmodified _KPYRPKNR_ REV__ENSG00000188501|ENST00000695545|LCTL;REV__nc|ENSG00000188501|Q6UWM7-2|LCTL 2.302733041254933 0.38822285293237185 1 K 1 -1 3.0989 0 0 0.29301 0 0 641.3639079414885 285.13230310611567 926.4962110476042 0 0 0 0 0 0 0 0 0 K 0.29301 + + 1 + NaN NaN 84963.1 NaN 86 438 525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 532 15.368 NaN 31310 35 0 5472.9 0.411 + -1 HFCARCAS 8 36 476.19817502358893 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 531 5946.08203125 0.6657475553508713 20 -0.1550741195678711 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87893.1 NaN 87 443 531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 536 15.391 NaN 129800 35 0 28400 0.411 + 31097 VTHEGSTVEK 10 32 543.7755645243247 1085.5365761154494 2 543.775634765625 MULTI HCD FTMS 0 0 0 535 46703.1796875 0.25017308709880076 -8 0.060530662536621094 1 Unmodified _VTHEGSTVEK_ nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000254709|B9A064|IGLL5 22.65808497894818 0.29917593477267174 1 VTHE 4 6 40.662 0 0 3.7458 0 0 0 616.2941024302434 616.2941024302434 40.66183773464459 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + VTHE 3.7458 + + 22 + NaN NaN 113780.5 NaN 88 446 535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 539 15.406 NaN 18410 35 0 2295.8 0.411 + -1 LTCFHRFIC 9 26 627.2986686608557 NaN 0 627.2982788085938 PEAK HCD FTMS 0 0 0 538 4084.773193359375 0.7945217364298501 2 -0.016063690185546875 1 2 Carbamidomethyl (C) _LTC(Carbamidomethyl (C))FHRFIC(Carbamidomethyl (C))_ REV__nc|ENSG00000216671|P0C7X3|CCNYL3;REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89611.2 NaN 89 448 538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 541 15.414 NaN 27156 35 0 5666.2 0.411 -1 SRKHHCRNCGN 11 34 475.88236774784116 NaN 0 475.869140625 PEAK HCD FTMS 0 0 0 540 6754.19970703125 0.9888683511107915 -7 0.05379486083984375 1 2 Carbamidomethyl (C) _SRKHHC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))GN_ ENSG00000100330|ENST00000401950|MTMR3;ENST00000491251.1_1_22:30418516-30421787:+|nuORF;nc|ENSG00000100330|Q13615-3|MTMR3 0.09484139111097674 0.34185110575506755 1 W 1 -1 4.3361 0 0 0.45655 0 0 492.8852666462698 267.76606165103755 760.6513282973074 0 0 0 0 0 0.2742275032520141 0 0 0 W 0.45655 - 1 + NaN NaN 87771.2 NaN 90 449 540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 543 15.422 NaN 58950 35 0 9123.4 0.411 + -1 RRHRDCRC 8 30 579.7783158111594 NaN 0 579.7635498046875 PEAK HCD FTMS 0 0 0 542 4626.845703125 0.6812001852711985 3 -0.02297210693359375 1 Carbamidomethyl (C) _RRHRDC(Carbamidomethyl (C))RC_ REV__ENST00000512958.1_1_4:169426072-169426111:-|nuORF 1.844237919475145 0.38822285293237185 1 HW 2 -1 7.4743 0 0 0.6457 0 0 312.2065817182186 519.1912935846311 831.3978753028498 0 0 0 0 0 0 0 0 0 HW 0.6457 - 4 + NaN NaN 99989.8 NaN 91 450 542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 549 15.46 NaN 27298 35 0 6166.3 0.411 + 32852 WWFCKKKV 8 21 562.8070898112674 NaN 0 562.8068237304688 PEAK HCD FTMS 0 0 0 548 3309.996337890625 0.47592643817929964 15 -0.1167898178100586 1 Unmodified _WWFCKKKV_ REV__ENSG00000204767|ENST00000377365|INSYN2B 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88158.9 NaN 92 455 548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 556 15.505 NaN 33975 35 0 4864 0.327 + 19227 NKHKPWLE 8 27 526.2854321006141 NaN 0 526.285888671875 PEAK HCD FTMS 0 0 0 555 3883.60595703125 0.434641702607995 -1 0.0073719024658203125 1 Unmodified _NKHKPWLE_ ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 0.6903765706972694 0.38822285293237185 1 P 1 7 3.1209 0 0 0.29707 0 0 524.7653089260344 425.71271692447505 950.4780258505095 0 0 0 0 0 0.2742275032520141 0 0 0 + P 0.29707 + + 1 + NaN NaN 95261.9 NaN 93 461 555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 557 15.509 NaN 32561 35 0 11005 0.261 + 19315 NMVQLLLE 8 13 480.266784660029 NaN 0 480.2669372558594 PEAK HCD FTMS 0 0 0 555 3771.79052734375 0.49559117483042586 3 -0.025476455688476562 2 Unmodified _NMVQLLLE_ ENST00000357613.8_1_16:75481541-75485728:-|nuORF 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88312.2 NaN 94 461 555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 559 15.515 NaN 107690 35 0 26200 0.411 + 31098 VTHEGSTVEK 10 41 543.7755645243247 1085.5365761154494 2 543.77490234375 MULTI HCD FTMS 0 0 0 558 54571.1796875 0.2923192934698456 8 -0.061908721923828125 1 Unmodified _VTHEGSTVEK_ nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000254709|B9A064|IGLL5 26.020703789607367 0.2677231329712098 1 VTHE 4 6 41.938 0 0 3.8634 0 0 0 616.2948975437181 616.2948975437181 41.938200260161125 0 0 0 0 1 0 0 0 + VTHE 3.8634 + + 18 + NaN NaN 111283.7 NaN 95 462 558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 562 15.53 NaN 8578.4 35 0 3371.9 0.411 + -1 WVFLLLFCF 9 10 622.8290161384454 NaN 0 622.8289794921875 PEAK HCD FTMS 0 0 0 561 4673.869140625 0.5729805068618183 10 -0.07729816436767578 1 Carbamidomethyl (C) _WVFLLLFC(Carbamidomethyl (C))F_ REV__ENSG00000174482|ENST00000698399|LINGO2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78077.9 NaN 96 464 561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 567 15.561 NaN 17578 35 0 3559.8 0.411 + 12548 KSLFMAYYR 9 19 589.8047760256188 1177.5949991180375 2 589.8046264648438 MULTI HCD FTMS 0 0 0 566 8828.9443359375 0.6782055177100985 -6 0.04584789276123047 1 Unmodified _KSLFMAYYR_ REV__ENSG00000144357|ENST00000272793|UBR3;REV__nc|ENSG00000144357|Q6ZT12-4|UBR3 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101917.2 NaN 97 468 566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 569 15.569 NaN 9967.4 35 0 2205.5 0.411 -1 GTQDLTQVMTS 11 16 598.775436700121 1195.5363204670418 2 598.7752685546875 MULTI HCD FTMS 0 0 0 568 4878.75927734375 0.6648889401722335 -4 0.03028392791748047 1 Oxidation (M) _GTQDLTQVM(Oxidation (M))TS_ ENSG00000130856|ENST00000320610|ZNF236;nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236 1.0714618166137932 0.41422159895841093 1 Q 1 -1 3.4949 0 0 0.29232 0 0 615.2851130469231 449.1789950006469 1064.46410804757 0 0 0 0 0 0 0 0 0 Q 0.29232 + + 3 + NaN NaN 104898.5 NaN 98 469 568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 571 15.577 NaN 6559.2 35 0 2339.5 0.411 + 19520 NRSERWDAY 9 10 598.775436700121 1195.5363204670418 2 599.277099609375 MULTI HCD FTMS 0 0 0 570 4036.56494140625 0.7129059942714917 -2 0.016060829162597656 1 Unmodified _NRSERWDAY_ ENSG00000123610|ENST00000243347|TNFAIP6 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91286.8 NaN 99 470 570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 573 15.585 NaN 30815 35 0 4808.4 0.411 + 8817 HKELEFHR 8 29 548.2879712519675 1094.561389570735 2 548.28759765625 MULTI HCD FTMS 0 0 0 572 6915.0927734375 0.817108982174677 -8 0.06187629699707031 1 Unmodified _HKELEFHR_ REV__ENSG00000165030|ENST00000297689|NFIL3 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89491.7 NaN 100 471 572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 578 15.615 NaN 14759 35 0 2704.9 0.411 -1 ELDELRRYC 9 17 627.2986162896759 NaN 0 627.2984008789062 PEAK HCD FTMS 0 0 0 577 3943.73974609375 0.7751232654378942 8 -0.06264114379882812 1 Carbamidomethyl (C) _ELDELRRYC(Carbamidomethyl (C))_ ENSG00000131018|ENST00000367255|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89084.1 NaN 101 475 577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 580 15.623 NaN 23435 35 0 3726.6 0.411 -1 CHASRFLHM 9 28 587.7648268941812 1173.5151008551622 2 587.7655639648438 MULTI HCD FTMS 0 0 0 579 5243.48095703125 0.8779154096481144 -1 0.007976531982421875 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))HASRFLHM(Oxidation (M))_ ENSG00000126351|ENST00000450525|THRA;ENSG00000151090|ENST00000646209|THRB;nc|ENSG00000151090|P10828-2|THRB 0.6014990680409731 0.3464572424761564 1 N 1 -1 7.232 0 0 0.61627 0 0 586.7307513451998 469.72529016666255 1056.4560415118624 0 0 0 0 0 0.3252574989159953 0 0 0 N 0.61627 - 2 + NaN NaN 98901.2 NaN 102 476 579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 583 15.639 NaN 38251 35 0 6129.6 0.411 + 31099 VTHEGSTVEK 10 22 543.7755645243247 1085.5365761154494 2 543.775634765625 MULTI HCD FTMS 0 0 0 582 10804.87890625 0.057878070182633676 24 -0.18883132934570312 1 Unmodified _VTHEGSTVEK_ nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000254709|B9A064|IGLL5 4.5288652416199255 0.4513317009562028 1 {[TV]|[{I|L}S]}HE 4 6 20.005 0 0 1.8429 0 0 0 616.2951754205686 616.2951754205686 20.00508444608478 0 0 0 0 0.3807196863200844 0 0 0 + {[TV]|[{I|L}S]}HE 1.8429 + + 3 + NaN NaN 95373 NaN 103 478 582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 585 15.647 NaN 21987 35 0 4580.7 0.411 + -1 MSIRWIFPA 9 16 589.8047760256188 1177.5949991180375 2 590.3075561523438 MULTI HCD FTMS 0 0 0 584 2047.2425537109375 0.23129241277533172 10 -0.07805347442626953 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))SIRWIFPA_ REV__ENST00000576846.1_1_17:7530278-7530680:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86515.2 NaN 104 479 584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 588 15.662 NaN 30674 35 0 5108.4 0.411 -1 VVDVLFLCF 9 30 556.2969635306602 NaN 0 556.296875 PEAK HCD FTMS 0 0 0 587 1329.318603515625 0.30753640525821724 -2 0.0155792236328125 1 Carbamidomethyl (C) _VVDVLFLC(Carbamidomethyl (C))F_ ENSG00000070214|ENST00000374720|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;nc|ENSG00000070214|Q8WWI5-3|SLC44A1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90007.7 NaN 105 481 587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 593 15.692 NaN 29186 35 0 5440.1 0.327 + 32566 WIPAFFFY 8 19 545.7732481730322 1089.5319434128644 2 545.772705078125 MULTI HCD FTMS 0 0 0 592 13448.080078125 0.3592610908687153 -8 0.06136894226074219 1 Unmodified _WIPAFFFY_ ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant 0.7936320650641473 0.540814922690045 1 Q 1 8 6.9897 0 0 0.64153 0 0 149.10488542454783 809.3449190729124 958.4498044974603 0 0 0 0 0 0 0 0 0 Q 0.64153 - 1 + NaN NaN 88694.2 NaN 106 485 592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 594 15.697 NaN 59335 35 0 10670 0.261 + -1 ESSMRSRF 8 24 508.2348927423216 1014.4552325514433 2 508.23455810546875 MULTI HCD FTMS 0 0 0 592 10273.2890625 0.8481444717273566 5 -0.04016876220703125 2 Oxidation (M) _ESSM(Oxidation (M))RSRF_ REV__ENST00000358127.8_1_9:36839512-36839866:-|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92891.3 NaN 107 485 592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 599 15.725 NaN 15972 35 0 2146.7 0.411 + 34983 YSSRAIEQHY 10 18 627.29875311941 NaN 0 627.2987060546875 PEAK HCD FTMS 0 0 0 598 4368.859375 1 0 0 1 Unmodified _YSSRAIEQHY_ REV__ENSG00000132600|ENST00000441236|PRMT7;REV__ENST00000563562.5_1_16:68349816-68371418:+|nuORF;REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF;REV__ENST00000566430.2_1_16:68349882-68355449:+|nuORF;REV__nc|ENSG00000132600|Q9NVM4-2|PRMT7;REV__nc|ENSG00000132600|Q9NVM4-3|PRMT7;REV__nc|ENSG00000132600|Q9NVM4-4|PRMT7 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86043.4 NaN 108 489 598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 602 15.74 NaN 28305 35 0 5391.9 0.411 + 23656 RPWPRRQE 8 21 562.8071472582998 NaN 0 562.8070068359375 PEAK HCD FTMS 0 0 0 601 4122.64697265625 0.608684208382533 -9 0.07005691528320312 1 Unmodified _RPWPRRQE_ REV__ENSG00000076356|ENST00000367033|PLXNA2;REV__nc|ENSG00000076356|O75051-2|PLXNA2;REV__PLXNA2|p.S161Rfs*19|2|0.04|ENSG00000076356|chr1:208217440-208217441|-/TCTTCTACAT|frameshift_variant 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82511.9 NaN 109 491 601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 605 15.756 NaN 30274 35 0 4376.5 0.411 + 32497 WFFLFGHR 8 31 555.2884885363003 1108.5624241394005 2 555.288818359375 MULTI HCD FTMS 0 0 0 604 4635.14306640625 0.41257441989597643 -4 0.031052589416503906 1 Unmodified _WFFLFGHR_ REV__ENST00000250916.5_1_19:1853189-1853714:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89427.1 NaN 110 493 604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 608 15.771 NaN 30620 35 0 4568.3 0.327 + 31235 VVQRAECRP 9 24 529.282143556392 1056.549734179584 2 529.281494140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VVQRAECRP_ ENSG00000188342|ENST00000340473|GTF2F2 0 0.3510170533115441 1 N 1 9 5.4846 0 0 0.5191 0 0 723.0459938004809 216.43499170474846 939.4809855052293 0 0 0 0 0 0 0 0 0 N 0.5191 - 1 + NaN NaN 93392.3 NaN 111 495 607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 609 15.776 NaN 39614 35 0 11421 0.261 -1 VAMRCRCSSMH 11 28 476.19817187748595 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 607 6010.01513671875 0.6042911234752937 -14 0.1090383529663086 2 2 Carbamidomethyl (C),2 Oxidation (M) _VAM(Oxidation (M))RC(Carbamidomethyl (C))RC(Carbamidomethyl (C))SSM(Oxidation (M))H_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803617-23803970:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 0 0.34212014346876374 1 S 1 -1 1.7827 0 0 0.18758 0 0 706.8933092317313 153.4377840631469 860.3310932948782 0 0 0 0 0 0 0 0 0 S 0.18758 + + 1 + NaN NaN 83808.1 NaN 112 495 607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 614 15.803 NaN 61541 35 0 5077.2 0.411 -1 EAIREHQM 8 57 515.2428289719983 1028.4711050107965 2 515.2425537109375 MULTI HCD FTMS 0 0 0 613 19061.041015625 0.33229991273054643 -11 0.08608627319335938 1 Oxidation (M) _EAIREHQM(Oxidation (M))_ ENSG00000171703|ENST00000343484|TCEA2;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3;ENST00000395053.7_1_20:62701832-62703530:+|nuORF;ENST00000461072.5_1_20:62701832-62703375:+|nuORF;ENST00000465111.5_1_20:62701563-62703530:+|nuORF;ENST00000477783.5_1_20:62701125-62703530:+|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000171703|Q15560-2|TCEA2;nc|ENSG00000187735|P23193-2|TCEA1 25.399314129420986 0.40691472774782006 1 R[KC]HQ{M(Oxidation (M))|F} 6 -1 30.961 0 0 3.0104 0 0 211.09637648750157 0 211.09637648750157 0 21.49674684468792 0 0 0 0.7059771852360797 0 0 0 R[KC]HQ{M(Oxidation (M))|F} 3.0104 - 47 NaN NaN 94754.5 NaN 113 499 613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 616 15.811 NaN 34448 35 0 5831.6 0.411 + -1 VCRRRRMV 8 32 546.3063108269918 1090.5980687207834 2 546.3063354492188 MULTI HCD FTMS 0 0 0 615 13860.8994140625 0.9478815321135019 -1 0.0080413818359375 1 Oxidation (M) _VCRRRRM(Oxidation (M))V_ REV__ENSG00000258429|ENST00000288022|PDF;REV__PDF|p.N235Kfs*9|1|0.21|ENSG00000258429|chr16:69329052-69329053|-/G|frameshift_variant 2.302733041254933 0.5385759549224092 1 QH 2 -1 10.969 0 0 1.0058 0 0 132.16346189716575 690.2921236627561 822.4555855599219 0 0 0 0 0 0 0 0 0 QH 1.0058 - 9 + NaN NaN 91001.2 NaN 114 500 615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 618 15.819 NaN 34445 35 0 5211.6 0.412 + 12052 KIRPCPPPPS 10 38 546.3063108269918 1090.5980687207834 2 546.3056640625 MULTI HCD FTMS 0 0 0 617 14623.029296875 1 0 0 1 Unmodified _KIRPCPPPPS_ REV__ENST00000379593.1_1_X:20153944-20159910:-|nuORF 3.5964929083625545 0.45626689593999237 1 QH 2 -1 9.464 0 0 0.86778 0 0 132.1591382655841 690.2996309869749 822.458769252559 0 0 0 0 0 0 0 0 0 QH 0.86778 - 9 + NaN NaN 109758.3 NaN 115 501 617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 621 15.835 NaN 28209 35 0 5799.3 0.411 + 35027 YTGYIFFL 8 30 512.2641792377327 1022.5138055422655 2 512.2648315429688 MULTI HCD FTMS 0 0 0 620 5974.92431640625 0.5371443669273468 -5 0.03898811340332031 1 Unmodified _YTGYIFFL_ REV__ENSG00000173852|ENST00000638088|DPY19L1;REV__ENST00000417811.2_3_7:32660640-32715635:-|nuORF;REV__nc|ENSG00000173852|Q2PZI1|DPY19L1;REV__nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;REV__nc|ENSG00000291139|Q6ZN68|DPY19L2P2 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 94055 NaN 116 503 620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 626 15.865 NaN 28634 35 0 4614.6 0.327 + 29445 TYTRQLNQ 8 21 512.2641792377327 1022.5138055422655 2 512.2631225585938 MULTI HCD FTMS 0 0 0 625 8883.1328125 0.798591663797307 -1 0.0073642730712890625 1 Unmodified _TYTRQLNQ_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|28|1|sense 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 106780 NaN 117 507 625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 627 15.87 NaN 38912 35 0 10839 0.261 + -1 PQWIVLGSAL 10 17 563.3185424804688 NaN 0 563.3185424804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PQWIVLGSAL_ REV__ENSG00000144406|ENST00000673920|UNC80;REV__ENST00000478701.1_1_2:210636760-210659540:+|nuORF;REV__nc|ENSG00000144406|Q8N2C7-2|UNC80;REV__nc|ENSG00000144406|Q8N2C7-3|UNC80;REV__nc|ENSG00000144406|Q8N2C7-4|UNC80;REV__nc|ENSG00000144406|Q8N2C7-7|UNC80;REV__nc|ENSG00000144406|Q8N2C7|UNC80;REV__UNC80|p.R207C|1|0.61|ENSG00000144406|chr2:209786084-209786084|C/T|missense_variant 0.45834013312273997 0.33979201340002624 1 K 1 -1 4.6041 0 0 0.40976 0 0 785.4482250470718 207.04102502994377 992.4892500770155 0 0 0 0 0 0 0 0 0 K 0.40976 - 1 + NaN NaN 82383.2 NaN 118 507 625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 636 15.927 NaN 69653 35 0 5816.1 0.411 -1 EAIREHQM 8 42 515.2428289719983 1028.4711050107965 2 515.24267578125 MULTI HCD FTMS 0 0 0 635 40010.78125 0.6975263893906495 5 -0.03824138641357422 1 Oxidation (M) _EAIREHQM(Oxidation (M))_ ENSG00000171703|ENST00000343484|TCEA2;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3;ENST00000395053.7_1_20:62701832-62703530:+|nuORF;ENST00000461072.5_1_20:62701832-62703375:+|nuORF;ENST00000465111.5_1_20:62701563-62703530:+|nuORF;ENST00000477783.5_1_20:62701125-62703530:+|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000171703|Q15560-2|TCEA2;nc|ENSG00000187735|P23193-2|TCEA1 27.628801355627647 0.38985241877747906 1 HQ{M(Oxidation (M))|F} 3 -1 26.995 0 0 2.6247 0 0 598.308885642775 0 598.308885642775 0 9.47621246364342 0 0 0 0.3807196863200844 0 0 0 HQ{M(Oxidation (M))|F} 2.6247 + + 59 NaN NaN 106498.2 NaN 119 515 635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 641 15.957 NaN 31055 35 0 5811.3 0.411 + -1 HFCARCAS 8 31 476.1980239941349 NaN 0 476.19769287109375 PEAK HCD FTMS 0 0 0 640 7816.96826171875 0.6796033470011177 -30 0.23250961303710938 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101039.9 NaN 120 519 640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 643 15.965 NaN 8908.6 35 0 1586.9 0.411 + -1 MEYRKFEEH 9 18 642.7866984946958 NaN 0 642.7860107421875 PEAK HCD FTMS 0 0 0 642 3491.8310546875 0.7054485283701726 -1 0.007976531982421875 1 Oxidation (M) _M(Oxidation (M))EYRKFEEH_ REV__ENSG00000104805|ENST00000405315|NUCB1;REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83603.4 NaN 121 520 642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 648 15.995 NaN 28552 35 0 4451.2 0.411 + 338 AGLWEAALYG 10 23 525.7658942891095 1049.517235645019 2 526.2676391601562 MULTI HCD FTMS 0 0 0 647 2137.14453125 0.29779128608775307 -8 0.06058502197265625 1 Unmodified _AGLWEAALYG_ ENST00000332132.8_1_X:55172668-55187609:-|nuORF;ENST00000358460.8_1_X:55172668-55187651:-|nuORF;ENST00000472571.2_1_X:55185560-55187609:-|nuORF 1.844237919475145 0.46554186016084764 1 P 1 10 1.5938 0 0 0.15186 0 0 523.7236087913064 425.71161829166255 949.435227082969 0 0 0 0 0 0 0 0 0 P 0.15186 - 3 + NaN NaN 87651.4 NaN 122 524 647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 651 16.011 NaN 45898 35 0 8720.2 0.411 + 2749 DWLRRMPR 8 29 565.3069436211647 NaN 0 565.3072509765625 PEAK HCD FTMS 0 0 0 650 1781.9755859375 0.1341774886554419 1 -0.007968902587890625 1 Unmodified _DWLRRMPR_ ENST00000453097.6_1_12:51818574-51818652:+|nuORF 0.6903765706972694 0.38822285293237185 1 N 1 8 8.7814 0 0 0.77808 0 0 564.7400946624481 446.79197107486567 1011.5320657373138 0 0 0 0 0 0.3807196863200844 0 0 0.25 N 0.77808 - 2 + NaN NaN 100196.6 NaN 123 526 650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 654 16.026 NaN 6034.3 35 0 2631.8 0.411 -1 NGDECAYHHP 10 8 600.2300446356234 NaN 0 600.230224609375 PEAK HCD FTMS 0 0 0 653 1267.847412109375 0.3980249371894923 1 -0.007986068725585938 1 Carbamidomethyl (C) _NGDEC(Carbamidomethyl (C))AYHHP_ ENSG00000100722|ENST00000251038|ZC3H14;ENST00000554020.5_1_14:89068416-89075752:+|nuORF;nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-6|ZC3H14;nc|ENSG00000100722|Q6PJT7-8|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83683.6 NaN 124 528 653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 656 16.035 NaN 24962 35 0 4752.9 0.327 + 23245 RGKGHLRETS 10 16 570.8153250395386 1139.6160971458771 2 570.8151245117188 MULTI HCD FTMS 0 0 0 655 13051.39453125 0.38403794452228546 -6 0.04640769958496094 1 Unmodified _RGKGHLRETS_ ENST00000409202.7_1_2:69053392-69053470:+|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83376.2 NaN 125 529 655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 657 16.039 NaN 20232 35 0 3149.6 0.444 + -1 YYSVMLRMA 9 18 583.2725426556625 NaN 0 583.27294921875 PEAK HCD FTMS 0 0 0 655 2065.96044921875 0.2330441684250647 62 -0.4870033264160156 2 2 Oxidation (M) _YYSVM(Oxidation (M))LRM(Oxidation (M))A_ REV__ENST00000537356.3_1_X:103358311-103358374:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85910.7 NaN 126 529 655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 660 16.055 NaN 38600 35 0 5265.3 0.326 + 31150 VTYEMDHG 8 28 476.1980239941349 NaN 0 476.1980285644531 PEAK HCD FTMS 0 0 0 659 8260.0390625 0.718123702858773 -18 0.14285850524902344 1 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77162.5 NaN 127 531 659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 661 16.059 NaN 38743 35 0 8209.2 0.261 + 23767 RRKQDYGP 8 21 510.27212546773325 1018.5296980022665 2 510.2718200683594 MULTI HCD FTMS 0 0 0 659 6359.671875 0.4885491510241836 -4 0.03607177734375 2 Unmodified _RRKQDYGP_ ENSG00000160993|ENST00000292566|ALKBH4 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85161.3 NaN 128 531 659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 664 16.072 NaN 31709 35 0 3821.9 0.411 + 7496 FWFVLCVH 8 26 525.7658942891095 1049.517235645019 2 525.7652587890625 MULTI HCD FTMS 0 0 0 663 6695.298828125 0.7107704649387597 -6 0.0534820556640625 1 Unmodified _FWFVLCVH_ ENST00000608304.5_2_3:73674880-73675039:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101693.2 NaN 129 533 663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 667 16.088 NaN 35873 35 0 4466.2 0.411 + 3129 EANRVQRF 8 31 510.27212546773325 1018.5296980022665 2 510.2714538574219 MULTI HCD FTMS 0 0 0 666 13017.4658203125 1 0 0 1 Unmodified _EANRVQRF_ ENSG00000180264|ENST00000696331|ADGRD2;nc|ENSG00000180264|Q7Z7M1|ADGRD2 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 83134 NaN 130 535 666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 669 16.096 NaN 23889 35 0 4551.5 0.411 + -1 LPFCCCGEE 9 34 586.214457801998 NaN 0 586.2144165039062 PEAK HCD FTMS 0 0 0 668 1855.048828125 0.2303009890878089 1 -0.008039474487304688 1 3 Carbamidomethyl (C) _LPFC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))GEE_ REV__ENSG00000129474|ENST00000262713|AJUBA;REV__nc|ENSG00000129474|Q96IF1-2|AJUBA 0.6014990680409731 0.29233206172879045 1 T 1 -1 2.7642 0 0 0.23617 0 0 483.4756552506772 582.8590181940061 1066.3346734446834 0 0 0 0 0 0 0 0 0 T 0.23617 - 2 + NaN NaN 97211.6 NaN 131 536 668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 671 16.104 NaN 35579 35 0 6904.6 0.411 + 2473 DRLCPFWK 8 21 532.7700452215292 1063.5255375098584 2 532.7699584960938 MULTI HCD FTMS 0 0 0 670 13384.478515625 0.6636336547436976 -1 0.008039474487304688 1 Unmodified _DRLCPFWK_ ENSG00000177119|ENST00000320560|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-2|ANO6;nc|ENSG00000177119|Q4KMQ2-3|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6 2.0597508629832335 0.5389364538378849 1 HE[WK] 4 6 16.198 0 0 1.523 0 0 465.24434096504064 0 465.24434096504064 0 16.197887582883936 0 0 0 0 0 0 0 HE[WK] 1.523 - 4 NaN NaN 104369.9 NaN 132 537 670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 680 16.164 NaN 16719 35 0 3794.3 0.327 + 10374 IMIMMMRDK 9 13 584.7892554754458 NaN 0 584.7889404296875 PEAK HCD FTMS 0 0 0 679 15038.4384765625 1 0 0 1 Unmodified _IMIMMMRDK_ REV__nc|ENSG00000169490|Q9BX73-2|TM2D2 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80842.9 NaN 133 545 679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 681 16.168 NaN 35900 35 0 4905.7 0.262 + -1 HFCARCAS 8 25 476.1980239941349 NaN 0 476.1982421875 PEAK HCD FTMS 0 0 0 679 6735.52685546875 0.5855833670464469 -4 0.029325485229492188 2 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 P 1 -1 3.0989 0 0 0.32607 0 0 377.4502339240136 472.84861169986567 850.2988456238793 0 0 0 0 0 0 0 0 0 P 0.32607 - 1 + NaN NaN 92212.5 NaN 134 545 679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 682 16.172 NaN 43938 35 0 6618.2 0.261 + 25307 SCCPGQHLTA 10 27 508.7179459245548 1015.4213389159096 2 508.71795654296875 MULTI HCD FTMS 0 0 0 679 4590.85302734375 0.36130740392834654 -1 0.0073871612548828125 3 Unmodified _SCCPGQHLTA_ ENST00000264088.8_1_19:6436333-6444241:-|nuORF;ENST00000601322.5_2_19:6436333-6444241:-|nuORF 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84240 NaN 135 545 679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 684 16.177 NaN 44609 35 0 10018 0.411 + 8133 GNAAFPKH 8 41 421.21930369295893 NaN 0 421.2193298339844 PEAK HCD FTMS 0 0 0 683 8174.591796875 0.8064402447958153 12 -0.09215164184570312 1 Unmodified _GNAAFPKH_ REV__ENSG00000164694|ENST00000297267|FNDC1;REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1;REV__TULP4-FNDC1|1|fusion 2.302733041254933 0.38822285293237185 1 H 1 -1 4.6041 0 0 0.54783 0 0 419.5674393177554 280.7837313287719 700.3511706465273 0 0 0 0 0 0 0 0 0 H 0.54783 + + 3 + NaN NaN 115685.2 NaN 136 546 683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 688 16.2 NaN 12184 35 0 3702.7 0.411 -1 KERWFCNGR 9 17 626.8011474609375 NaN 0 626.8011474609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _KERWFC(Carbamidomethyl (C))NGR_ ENST00000448177.1_1_3:25832680-25833374:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91025.8 NaN 137 549 687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 690 16.208 NaN 27710 35 0 5326.3 0.411 + 33883 YLMRMVKAL 9 22 562.8194419417714 NaN 0 562.8076782226562 PEAK HCD FTMS 0 0 0 689 1480.1978759765625 1 0 0 1 Unmodified _YLMRMVKAL_ ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-2|TAF6;nc|ENSG00000106290|P49848-3|TAF6;nc|ENSG00000106290|P49848-4|TAF6 0 0.29524684227089293 1 {M(Oxidation (M))|F} 1 8 1.5938 0 0 0.14184 0 0 525.8200229442865 447.72089563541255 973.5409185796991 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.14184 + + 1 + NaN NaN 85150 NaN 138 550 689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 695 16.238 NaN 34548 35 0 4181.5 0.411 + 21671 PYWQVTEV 8 30 511.25331478286313 1020.4920766325263 2 511.25286865234375 MULTI HCD FTMS 0 0 0 694 3749.736572265625 0.35130046570709766 -4 0.030229568481445312 1 Unmodified _PYWQVTEV_ REV__ENSG00000049167|ENST00000676185|ERCC8;REV__ENST00000477893.1_1_5:60214058-60224782:-|nuORF;REV__ENST00000484330.5_1_5:60198317-60214439:-|nuORF;REV__ENST00000495985.5_1_5:60199536-60214382:-|nuORF;REV__ENST00000497892.5_1_5:60199409-60224782:-|nuORF;REV__nc|ENSG00000049167|Q13216-2|ERCC8 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88601.5 NaN 139 554 694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 699 16.261 NaN 53654 35 0 5019.2 0.411 -1 NAESGRGQVM 10 37 532.7431594250739 1063.4717659169478 2 532.742919921875 MULTI HCD FTMS 0 0 0 698 25982.796875 0.07631341155435951 -32 0.25765419006347656 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 30.7034409873982 0.22608124881558994 1 {[QG]|[NA]}ES{[MG]|[TS]}[{I|L}P]V{M(Oxidation (M))|F} 10 -1 {[QG]|[NA]} + + 38.689 7.2185 3.9002 3.638 3.638 59.718 0 0 0 0 38.68948444925195 0 0 0 1.805462187404089 0 0 0 {[QG]|[NA]}ES{[MG]|[TS]}[{I|L}P]V{M(Oxidation (M))|F} 3.638 - 37 + NaN NaN 102749.1 NaN 140 557 698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 703 16.284 NaN 193700 35 0 28108 0.412 + 4104 ESTGSIAKR 9 62 474.75908454636345 947.5036161595269 2 474.7586975097656 MULTI HCD FTMS 0 0 0 702 102172.46875 0.4494210756159796 -6 0.045742034912109375 1 Unmodified _ESTGSIAKR_ ENSG00000149925|ENST00000642816|ALDOA;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 47.594388314883695 0.03493607795751234 1 ESTGS{I|L}AKR 9 0 + 90.812 0 0 9.5843 9.5843 99.062 0 0 0 59.79339555460717 16.478174818886373 16.478174818886373 90.8119020481736 0 0.3807196863200844 0 0.75 0.6139829889124311 + + ESTGS{I|L}AKR 9.5843 + + 74 + NaN NaN 159919 NaN 141 560 702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 707 16.307 NaN 39206 35 0 5332.4 0.411 + 3838 EPHPGERAA 9 32 482.235711800831 962.456870668462 2 482.2354431152344 MULTI HCD FTMS 0 0 0 706 5016.1943359375 0.3538018499201832 -3 0.0229034423828125 1 Unmodified _EPHPGERAA_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT;nc|ENSG00000147813|Q6XQN6-3|NAPRT 5.731851221503515 0.3075653528928475 1 EPH 3 6 26.198 0 0 2.722 0 0 0 596.2805880182249 596.2805880182249 26.197887582883936 0 0 0 0 0 0 0 0 + EPH 2.722 + + 3 + NaN NaN 93731.8 NaN 142 563 706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 718 16.381 NaN 314660 35 0 37113 0.411 + 18871 NAESGRGQVM 10 76 532.7431594250739 1063.4717659169478 2 532.7430419921875 MULTI HCD FTMS 0 0 0 717 204416.640625 0.6003869136807556 -16 0.12021827697753906 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 154.7525637096362 8.774082904506077E-08 1 NAESGRGQV{M(Oxidation (M))|F} 10 0 + 113.71 0 0 10.692 10.692 92.271 0 0 0 6.67349402358866 6.67349402358866 6.67349402358866 6.67349402358866 0 3.048455006504028 1.3979400086720375 0.7302046884880937 0.3807196863200844 + + NAESGRGQV{M(Oxidation (M))|F};{[QG]|[NA]}ESNRQV{M(Oxidation (M))|F};NAESGRG{I|L}N{M(Oxidation (M))|F};{[QG]|[NA]}ESNR[AG]V{M(Oxidation (M))|F};{[QG]|[NA]}ESGGRQV{M(Oxidation (M))|F};NAESGRG{I|L}GG{M(Oxidation (M))|F};{[QG]|[NA]}ESNV{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F};{[QG]|[NA]}ESGGR[AG]V{M(Oxidation (M))|F};{[QG]|[NA]}ESGGV{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F};[QA]DSGRGQV{M(Oxidation (M))|F} 10.692;10.065;9.4275;9.1989;9.1989;8.5657;8.3922;8.3371;7.5264;6.6916 +;-;-;-;-;-;-;-;-;- + 755 + NaN NaN 187616.3 NaN 143 573 717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 720 16.389 NaN 18854 35 0 5543.5 0.411 + 25353 SEAEHQRAY 9 20 545.7491953239482 1089.4838377146964 2 545.7487182617188 MULTI HCD FTMS 0 0 0 719 8422.3681640625 0.27261653880085457 -6 0.04479217529296875 1 Unmodified _SEAEHQRAY_ ENSG00000204592|ENST00000376630|HLA-E 3.5964929083625545 0.32375295897743744 1 CY 2 8 20.969 0 0 1.9247 0 0 805.415819236525 0 805.415819236525 0 20.969100130080562 0 0 0 0 0 0 0 CY 1.9247 - 1 NaN NaN 100525.5 NaN 144 574 719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 723 16.405 NaN 123650 35 0 16095 0.411 + 4105 ESTGSIAKR 9 59 474.75908454636345 947.5036161595269 2 474.7587890625 MULTI HCD FTMS 0 0 0 722 78596.140625 0.34571702623122036 10 -0.07588005065917969 1 Unmodified _ESTGSIAKR_ ENSG00000149925|ENST00000642816|ALDOA;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 29.84058131909904 0.11198220037953927 1 ESTGS{I|L}AKR 9 0 + 80.5 0 0 8.496 8.496 97.744 0 0 0 69.06779572488075 16.478174818886373 16.478174818886373 80.49955520665284 0 0 0 0.4247425010840047 0.28872548999643577 + + ESTGS{I|L}AKR 8.496 + + 71 + NaN NaN 115087.6 NaN 145 576 722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 731 16.457 NaN 24290 35 0 6069.6 0.411 + 21766 QAFYKYAK 8 34 509.77052285301534 NaN 0 509.77069091796875 PEAK HCD FTMS 0 0 0 730 5826.7744140625 1 0 0 1 Unmodified _QAFYKYAK_ ENSG00000172159|ENST00000304195|FRMD3;FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;nc|ENSG00000172159|A2A2Y4-2|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-5|FRMD3 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86070.8 NaN 146 583 730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 733 16.465 NaN 21665 35 0 4484.3 0.411 + -1 FCLKEGTKA 9 24 527.275110387984 NaN 0 527.2750244140625 PEAK HCD FTMS 0 0 0 732 7783.6181640625 1 0 0 1 Carbamidomethyl (C) _FC(Carbamidomethyl (C))LKEGTKA_ REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF 1.4819007175156935 0.28806575819904134 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92977.2 NaN 147 584 732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 737 16.488 NaN 73214 35 0 12465 0.411 + 2357 DPDSKEHSV 9 37 507.2304006228277 1012.4462483124554 2 507.2303161621094 MULTI HCD FTMS 0 0 0 736 18801.544921875 0.8399826495568238 -5 0.03830146789550781 1 Unmodified _DPDSKEHSV_ ENSG00000116830|ENST00000369466|TTF2;nc|ENSG00000116830|Q9UNY4-2|TTF2 8.745405648335112 0.2847203663274469 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 96235.1 NaN 148 587 736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 740 16.504 NaN 434650 35 0 50259 0.411 + 18872 NAESGRGQVM 10 80 532.7431594250739 1063.4717659169478 2 532.7431030273438 MULTI HCD FTMS 0 0 0 739 340474.84375 1 0 0 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 214.0499029155499 8.831488727613143E-25 1 NAESGRGQV{M(Oxidation (M))|F} 10 0 + 126.37 0 0 11.882 11.882 90.08 0 0 0 1.3157231629319739 1.3157231629319739 1.3157231629319739 1.3157231629319739 0 3.2302046884880937 1.3979400086720375 1.079689690656103 0.6203715150305281 + + NAESGRGQV{M(Oxidation (M))|F};{[QG]|[NA]}ESGRGQV{M(Oxidation (M))|F};{[QG]|[NA]}ESGRG[AG]V{M(Oxidation (M))|F};NAESGRG[AG]V{M(Oxidation (M))|F};NAESGRG{I|L}N{M(Oxidation (M))|F};{[QG]|[NA]}ES[RN]QV{M(Oxidation (M))|F};NAESGRG{I|L}GG{M(Oxidation (M))|F};NAES[RN]QV{M(Oxidation (M))|F};{[QG]|[NA]}ESGRVAN{M(Oxidation (M))|F};{[QG]|[NA]}ES[RN][AG]V{M(Oxidation (M))|F} 11.882;11.759;10.897;10.795;10.681;9.9715;9.5935;9.4465;9.1795;9.1057 +;+;-;-;-;-;-;-;-;- + 1921 + NaN NaN 211275 NaN 149 589 739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 742 16.512 NaN 19624 35 0 5280 0.327 + 25354 SEAEHQRAY 9 14 545.7491953239482 1089.4838377146964 2 545.7488403320312 MULTI HCD FTMS 0 0 0 741 13557.3203125 0.4388254784181201 10 -0.07851409912109375 1 Unmodified _SEAEHQRAY_ ENSG00000204592|ENST00000376630|HLA-E 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83991.1 NaN 150 590 741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 743 16.516 NaN 30352 35 0 11138 0.261 -1 YMEKVRQL 8 18 541.7885024546998 NaN 0 541.7885131835938 PEAK HCD FTMS 0 0 0 741 4362.67529296875 0.43709639040125114 -11 0.08392143249511719 2 Oxidation (M) _YM(Oxidation (M))EKVRQL_ CON__A2A5Y0;CON__Q9D646;CON__REFSEQ:XP_986630 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97101.3 NaN 151 590 741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 747 16.536 NaN 31302 35 0 5688.9 0.411 + 30893 VQSSLAITSN 10 31 510.271994916229 1018.529436899258 2 510.27215576171875 MULTI HCD FTMS 0 0 0 746 5807.8173828125 0.45724488659918094 -6 0.04833030700683594 1 Unmodified _VQSSLAITSN_ AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90755 NaN 152 593 746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 750 16.552 NaN 18891 35 0 2385.7 0.411 + 4996 FCCFTGIRHP 10 28 590.7736837478419 NaN 0 590.7967529296875 PEAK HCD FTMS 0 0 0 749 1384.4736328125 0.9332550629314768 1 -0.0079803466796875 1 Unmodified _FCCFTGIRHP_ REV__ENST00000321792.5_1_1:89449705-89458421:-|nuORF 0.4007161486938917 0.3398413315442166 1 D 1 -1 6.9897 0 0 0.59258 0 0 714.8093476208807 346.6836031549438 1061.4929507758245 0 0 0 0 0 0 0 0 0 D 0.59258 - 1 + NaN NaN 109355.6 NaN 153 595 749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 752 16.56 NaN 32519 35 0 4963.3 0.411 + -1 CRWHDPIC 8 20 543.7338659218536 NaN 0 543.734130859375 PEAK HCD FTMS 0 0 0 751 4067.08203125 0.45608057311172784 -2 0.015516281127929688 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))RWHDPIC_ REV__ENSG00000168702|ENST00000389484|LRP1B;REV__LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 E 1 -1 6.9897 0 0 0.64394 0 0 63.9983293593719 889.3901380296107 953.3884673889827 0 0 0 0 0 0 0 0 0 E 0.64394 - 1 + NaN NaN 101266.1 NaN 154 596 751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 758 16.597 NaN 19382 35 0 4876.3 0.327 + -1 MRRQKMFA 8 15 542.2807189589071 1082.546884984614 2 542.2807006835938 MULTI HCD FTMS 0 0 0 757 4566.509765625 0.5743084352034248 1 -0.009929656982421875 1 Oxidation (M) _M(Oxidation (M))RRQKMFA_ REV__ENSG00000118515|ENST00000367858|SGK1;REV__ENST00000367855.7_1_6:134492115-134495951:-|nuORF;REV__ENST00000472859.2_1_6:134495091-134495791:-|nuORF;REV__ENST00000474427.6_1_6:134495647-134495951:-|nuORF;REV__ENST00000525700.1_1_6:134495091-134498975:-|nuORF;REV__ENST00000530421.5_1_6:134495091-134495951:-|nuORF;REV__ENST00000532021.5_1_6:134494408-134498975:-|nuORF;REV__ENST00000532856.5_1_6:134494408-134495951:-|nuORF;REV__ENST00000534658.5_1_6:134494506-134495951:-|nuORF;REV__nc|ENSG00000118515|O00141-3|SGK1;REV__nc|ENSG00000118515|O00141-4|SGK1;REV__nc|ENSG00000118515|O00141-5|SGK1;REV__nc|ENSG00000118515|O00141|SGK1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94666.8 NaN 155 601 757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 759 16.602 NaN 39645 35 0 9759.6 0.261 + 29951 VFGTDEKDLA 10 20 547.7704417600155 NaN 0 547.7705078125 PEAK HCD FTMS 0 0 0 757 4266.56689453125 0.6620660857642436 8 -0.065765380859375 2 Unmodified _VFGTDEKDLA_ REV__ENSG00000186976|ENST00000262726|EFCAB6;REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6;REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6;REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103805 NaN 156 601 757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 763 16.622 NaN 274010 35 0 35063 0.326 + 18873 NAESGRGQVM 10 46 532.7431594250739 1063.4717659169478 2 532.7430419921875 MULTI HCD FTMS 0 0 0 762 190539.71875 0.5596293595479475 15 -0.11765098571777344 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 97.74103586103693 0.00040826645800522306 1 NAESGR{[QG]|[NA]}V{M(Oxidation (M))|F} 10 0 + 102.7 0 0 9.6567 9.6567 95.922 0 0 0 15.511525224473814 15.511525224473814 15.511525224473814 15.511525224473814 0 2.774227503252014 1.3010299956639813 0.3807196863200844 0 + + NAESGR{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ESGR{[QG]|[NA]}V{M(Oxidation (M))|F};{[CP]|[EA]}NSGR{[QG]|[NA]}V{M(Oxidation (M))|F};{[CP]|[EA]}GGSGR{[QG]|[NA]}V{M(Oxidation (M))|F} 9.6567;8.1981;5.5386;4.6768 +;+;-;- + 223 + NaN NaN 124604 NaN 157 604 762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 764 16.627 NaN 36372 35 0 9203.4 0.261 -1 MWWWRWRIVV 10 23 525.9378354802915 NaN 0 525.723876953125 PEAK HCD FTMS 0 0 0 762 1679.2310791015625 0.4497154384420029 -1 0.0073680877685546875 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))WWWRWRIVV_ ENST00000536283.1_1_12:49350078-49350123:-|nuORF 0.15932191953741626 0.34004793154798674 1 T 1 -1 1.2591 0 0 0.11993 0 0 798.8934189080454 146.89480005435783 945.7882189624032 0 0 0 0 0 0 0 0 0 T 0.11993 - 1 + NaN NaN 88588.2 NaN 158 604 762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 767 16.64 NaN 10752 35 0 2455.5 0.411 + 19204 NIILYCHWH 9 22 599.793212890625 NaN 0 599.793212890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NIILYCHWH_ REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90411.6 NaN 159 606 766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 770 16.655 NaN 185610 35 0 37454 0.411 + 27600 TAGRHGDDL 9 58 471.22531455218416 940.4360761711683 2 471.22503662109375 MULTI HCD FTMS 0 0 0 769 104040.0625 0.11005793403218775 -12 0.09533309936523438 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 53.31671820480216 0.026930930319421505 1 [TA]GRHGDD{I|L} 9 0 + 75.353 0 0 8.0126 8.0126 96.265 0 0 0 25.48332479720628 44.60795294801265 25.48332479720628 50.44531259372398 0 1.6237125054200234 1.6989700043360187 0.3252574989159953 0 + + [TA]GRHGDD{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YG][{M(Oxidation (M))|F}V]D{I|L};T[WM][Y{I|L}]D{I|L} 8.0126;2.6486;2.1771 +;-;- + 98 NaN NaN 141160.2 NaN 160 608 769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 772 16.663 NaN 31462 35 0 4574.6 0.411 + 14510 LFCVLSGLFV 10 34 549.30666520872 1096.59877748424 2 549.3062133789062 MULTI HCD FTMS 0 0 0 771 4930.63427734375 0.5660442795268877 -3 0.023527145385742188 1 Unmodified _LFCVLSGLFV_ ENSG00000172689|ENST00000308287|MS4A10 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96918.9 NaN 161 609 771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 778 16.701 NaN 57894 35 0 27305 0.411 + 32444 WCWAPDGCG 9 24 497.6810378279263 993.3475227226526 2 497.6806945800781 MULTI HCD FTMS 0 0 0 777 14500.9677734375 0.44836947889826834 -7 0.05319786071777344 1 Unmodified _WCWAPDGCG_ REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104560 NaN 162 614 777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 781 16.716 NaN 24340 35 0 5379.5 0.411 + -1 VSTMILYW 8 19 514.7595478545222 1027.5045427758444 2 514.759033203125 MULTI HCD FTMS 0 0 0 780 9682.4423828125 0.2803196872621905 -12 0.09416580200195312 1 Oxidation (M) _VSTM(Oxidation (M))ILYW_ REV__ENST00000502962.5_1_4:10077004-10094774:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94556.9 NaN 163 616 780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 784 16.732 NaN 47743 35 0 5494.3 0.411 + 15764 LPFSCFYS 8 40 482.2167362581263 962.4189195830526 2 482.216796875 MULTI HCD FTMS 0 0 0 783 14625.0244140625 0.804566390154737 -1 0.00753021240234375 1 Unmodified _LPFSCFYS_ REV__ENST00000367568.4_1_6:144509016-144509238:+|nuORF 5.230669730166228 0.5342319408533849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 93863.7 NaN 164 618 783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 786 16.74 NaN 161970 35 0 21530 0.327 + 18874 NAESGRGQVM 10 36 532.7431594250739 1063.4717659169478 2 532.7429809570312 MULTI HCD FTMS 0 0 0 785 115841.6015625 0.34023542029307413 30 -0.2469463348388672 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 61.08992128646608 0.03745793995309655 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 0 + 75.463 0 0 7.0959 7.0959 91.34 0 0 0 3.8071968632008435 3.8071968632008435 3.8071968632008435 11.53212513775344 0 2.8494850021680094 1.3010299956639813 0 0.7302046884880937 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}{[VA]|[{I|L}G]}N{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}[{M(Oxidation (M))|F}V]{[QG]|[NA]} 7.0959;6.0115;5.6105;4.1052 +;-;-;- + 85 NaN NaN 101575.3 NaN 165 619 785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 787 16.744 NaN 135760 35 0 16161 0.261 -1 MAEGKQHAL 9 38 500.74775630454053 999.4809596758811 2 500.74755859375 MULTI HCD FTMS 0 0 0 785 73355.1640625 0.8999552680261851 3 -0.024835586547851562 2 Oxidation (M) _M(Oxidation (M))AEGKQHAL_ ENSG00000232119|ENST00000371317|MCTS1;ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1 22.736283301280096 0.1639198954644489 1 {[MS]|[{M(Oxidation (M))|F}A]}E 3 -1 33.684 0 0 3.3702 0 0 0 649.342995158556 649.342995158556 3.334909110043327 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0 {[MS]|[{M(Oxidation (M))|F}A]}E 3.3702 + + 21 NaN NaN 102735.7 NaN 166 619 785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 791 16.765 NaN 25919 35 0 8622.2 0.411 + -1 LLELILILY 9 26 572.8643347036103 NaN 0 572.86376953125 PEAK HCD FTMS 0 0 0 790 9565.8466796875 0.8457319981336859 -10 0.07858657836914062 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLELILILY_ REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF 0 0.29524684227089293 1 C(Carbamidomethyl (C)) 1 -1 1.2591 0 0 0.11009 0 0 411.86299450312055 568.7910860650999 980.6540805682205 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.11009 - 1 + NaN NaN 91382.8 NaN 167 622 790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 793 16.773 NaN 31432 35 0 5133.1 0.411 + 31151 VTYEMDHG 8 21 476.1980239941349 NaN 0 476.19744873046875 PEAK HCD FTMS 0 0 0 792 6099.7255859375 0.5303071197426116 74 -0.6007804870605469 1 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96654 NaN 168 623 792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 795 16.781 NaN 1030900 35 0 231170 0.327 + 27601 TAGRHGDDL 9 72 471.22531455218416 940.4360761711683 2 471.22509765625 MULTI HCD FTMS 0 0 0 794 737000.5 0.779629985426906 4 -0.03824615478515625 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 103.82355648334675 0.003950725192926219 1 [TA]GRHGDD{I|L} 9 0 + 86.903 0 0 9.2407 9.2407 94.327 0 0 0 10.435143701554424 10.435143701554424 10.435143701554424 10.435143701554424 0 1.8424778212679485 1.6989700043360187 1.0114393726401687 0.25 + + [TA]GRHGDD{I|L};TAGRHGDD{I|L};{[NV]|[RG]}[TA]HGDD{I|L};TQRHGDD{I|L};T[WM][Y{I|L}]D{I|L};{NN|[MP]|[D{I|L}]|[EV]}[Y{I|L}][YT][PG];{NN|[MP]|[D{I|L}]|[EV]}[DG][Y{I|L}][{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}[Y{I|L}][DG][{M(Oxidation (M))|F}V] 9.2407;8.1311;5.6425;5.0782;2.7467;1.6053;1.1676;0.54048 +;+;-;-;-;-;-;- + 323 NaN NaN 229747.3 NaN 169 624 794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 796 16.785 NaN 24054 35 0 5602.2 0.261 + -1 GPRMWQCL 8 14 524.2477916373036 NaN 0 524.2474975585938 PEAK HCD FTMS 0 0 0 794 6189.3125 0.6187682190766535 -10 0.07989883422851562 2 Carbamidomethyl (C) _GPRMWQC(Carbamidomethyl (C))L_ REV__ENST00000481138.5_1_9:99615299-99616749:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101961.1 NaN 170 624 794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 797 16.789 NaN 33449 35 0 8372.7 0.261 + 7880 FYTMYNRK 8 15 561.7738273064815 NaN 0 561.7734375 PEAK HCD FTMS 0 0 0 794 4130.25830078125 0.46429226566432275 -30 0.23640823364257812 3 Unmodified _FYTMYNRK_ ENSG00000178127|ENST00000318388|NDUFV2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87581.9 NaN 171 624 794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 801 16.809 NaN 26380 35 0 4516 0.327 + 4124 ETGKNGGFGR 10 19 511.75448056490205 1021.4944081966041 2 511.7542724609375 MULTI HCD FTMS 0 0 0 800 2055.60498046875 0.13399349785024967 -6 0.05174827575683594 1 Unmodified _ETGKNGGFGR_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 1.4819007175156935 0.4674597685733628 1 N 1 9 5.4846 0 0 0.53691 0 0 415.20584726086037 489.21970544986567 904.425552710726 0 0 0 0 0 0 0 0 0 + N 0.53691 + + 1 + NaN NaN 86856.8 NaN 172 627 800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 802 16.814 NaN 43585 35 0 9244.1 0.261 + 35293 YVYNYEAE 8 22 525.724078951286 NaN 0 525.74072265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YVYNYEAE_ CON__ENSEMBL:ENSBTAP00000032840 0 0.38822285293237185 1 V 1 7 5.4846 0 0 0.52262 0 0 542.6848389555031 404.66135584049067 947.3461947959938 0 0 0 0 0 0 0 0 0 + V 0.52262 + + 1 + NaN NaN 90317.8 NaN 173 627 800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 804 16.819 NaN 50946 35 0 24249 0.327 + -1 CMCSQVNH 8 12 497.6810378279263 993.3475227226526 2 497.6806335449219 MULTI HCD FTMS 0 0 0 803 10258.4580078125 0.31719120703709514 7 -0.0578460693359375 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))CSQVNH_ REV__ENST00000531381.1_1_11:121960383-121960554:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92667.8 NaN 174 628 803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 805 16.824 NaN 35465 35 0 11773 0.261 + 34900 YSHLVGHRR 9 16 562.8070514371786 NaN 0 562.8065185546875 PEAK HCD FTMS 0 0 0 803 4562.39404296875 0.7168111931930814 7 -0.0578460693359375 2 Unmodified _YSHLVGHRR_ ENSG00000204611|ENST00000600228|ZNF616 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88145.7 NaN 175 628 803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 808 16.837 NaN 31546 35 0 5299.4 0.411 + 26589 SVSSSSYRR 9 29 514.7595478545222 1027.5045427758444 2 514.7593383789062 MULTI HCD FTMS 0 0 0 807 19477.740234375 0.5639066916387058 2 -0.015539169311523438 1 Unmodified _SVSSSSYRR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 10.073929032068715 0.27331982688540024 1 R 1 8 18.852 0 0 1.8347 0 0 853.3930295695928 0 853.3930295695928 0 18.85151878060192 0 0 0 0.4247425010840047 0 0 0 + R 1.8347 + + 1 + NaN NaN 90037.3 NaN 176 630 807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 812 16.859 NaN 127040 35 0 14615 0.327 + 18875 NAESGRGQVM 10 37 532.7431594250739 1063.4717659169478 2 532.7429809570312 MULTI HCD FTMS 0 0 0 811 78314.484375 0.23001547930073762 44 -0.35393333435058594 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 69.33821966488729 0.018369488249132326 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 0 + 76.048 0 0 7.1509 7.1509 92.39 0 0 0 6.293709283484077 6.293709283484077 6.293709283484077 15.339322000954283 0 2.8494850021680094 1.154901959985743 0 1.110924374808178 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}[{M(Oxidation (M))|F}V]{[QG]|[NA]} 7.1509;5.7085;3.5191 +;-;- + 68 NaN NaN 102529.7 NaN 177 633 811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 813 16.864 NaN 41187 35 0 7691 0.261 + 17798 MFHGERKL 8 22 509.26973210734565 1016.5249112814913 2 509.2695617675781 MULTI HCD FTMS 0 0 0 811 4083.70849609375 0.8377955672772048 1 -0.009885787963867188 2 Unmodified _MFHGERKL_ REV__ENSG00000148057|ENST00000376419|IDNK;REV__nc|ENSG00000148057|Q5T6J7-2|IDNK;REV__nc|ENSG00000148057|Q5T6J7-3|IDNK 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92950.3 NaN 178 633 811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 819 16.899 NaN 224160 35 0 44275 0.411 + 27602 TAGRHGDDL 9 58 471.22531455218416 940.4360761711683 2 471.22503662109375 MULTI HCD FTMS 0 0 0 818 147363.90625 0.15588770982128158 18 -0.14523696899414062 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 61.08992128646608 0.016056751534446034 1 [TA]GRHGDD{I|L} 9 0 + 79.09 0 0 8.41 8.41 97.228 0 0 0 27.592503013052934 32.447274948966935 27.592503013052934 59.865393123947115 0 1.5924778212679485 2 0.7302046884880937 0 + + [TA]GRHGDD{I|L};T[WM][Y{I|L}]D{I|L} 8.41;2.0443 +;- + 145 NaN NaN 150955.6 NaN 179 638 818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 829 16.966 NaN 38220 35 0 5360.7 0.327 + 4350 EVYPEARKK 9 22 560.311482319487 1118.608411705774 2 560.3111572265625 MULTI HCD FTMS 0 0 0 828 19829.90625 0.4324109026925212 -5 0.03686714172363281 1 Unmodified _EVYPEARKK_ ENSG00000150459|ENST00000382533|SAP18;ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86441.2 NaN 180 647 828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 830 16.97 NaN 25143 35 0 5643.8 0.261 + 8831 HKYDSVRTY 9 19 584.7892925803852 NaN 0 584.7886962890625 PEAK HCD FTMS 0 0 0 828 18145.298828125 0.5574873565535897 -10 0.0744781494140625 2 Unmodified _HKYDSVRTY_ REV__ENSG00000141934|ENST00000434325|PLPP2;REV__nc|ENSG00000141934|O43688-2|PLPP2;REV__nc|ENSG00000141934|O43688-3|PLPP2 1.844237919475145 0.28630992268396543 1 Q 1 -1 4.6041 0 0 0.39433 0 0 543.2301832058891 493.25205408267817 1036.4822372885674 0 0 0 0 0 0 0 0 0 Q 0.39433 - 1 + NaN NaN 87931.3 NaN 181 647 828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 831 16.974 NaN 34869 35 0 6961.2 0.261 + 11706 KAMLGMPSST 10 23 511.75448056490205 1021.4944081966041 2 511.75396728515625 MULTI HCD FTMS 0 0 0 828 1909.9766845703125 0.12450079621797734 14 -0.11574172973632812 3 Unmodified _KAMLGMPSST_ ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000130538|Q8NG94|OR11H1 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84115.3 NaN 182 647 828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 834 16.987 NaN 94902 35 0 9551.6 0.411 + 18876 NAESGRGQVM 10 51 532.7431594250739 1063.4717659169478 2 532.7430419921875 MULTI HCD FTMS 0 0 0 833 59622.140625 0.17511467211004483 60 -0.48006439208984375 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 61.08992128646608 0.03745793995309655 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 0 + 59.174 0 0 5.5642 5.5642 88.585 0 0 0 5.286596949921218 5.286596949921218 5.286596949921218 11.53212513775344 0 2.774227503252014 0 0.3494850021680094 0.7302046884880937 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}[{M(Oxidation (M))|F}V]{[QG]|[NA]} 5.5642;4.4798;1.8707 +;-;- + 80 NaN NaN 117726.1 NaN 183 649 833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 836 16.995 NaN 23984 35 0 5296.5 0.327 -1 HFMCPLAR 8 17 524.2475490651401 NaN 0 524.2474975585938 PEAK HCD FTMS 0 0 0 835 1541.1224365234375 0.19871761413854644 1 -0.00994110107421875 1 Carbamidomethyl (C),Oxidation (M) _HFM(Oxidation (M))C(Carbamidomethyl (C))PLAR_ ENSG00000164081|ENST00000341333|TEX264;ENST00000463857.1_1_3:51718392-51738029:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94529.1 NaN 184 650 835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 837 16.999 NaN 33666 35 0 10726 0.261 + -1 LAMYLVFN 8 22 514.7597522671447 1027.5049516010893 2 514.7598266601562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LAM(Oxidation (M))YLVFN_ REV__ENST00000450820.2_1_1:25580287-25594290:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89119.3 NaN 185 650 835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 840 17.012 NaN 45140 35 0 11182 0.411 + 24058 RWVWWLGQ 8 25 565.8001333058871 NaN 0 565.8005981445312 PEAK HCD FTMS 0 0 0 839 8967.7880859375 0.6971609357292005 -99 0.7815608978271484 1 Unmodified _RWVWWLGQ_ ENST00000473638.5_1_22:39708982-39709710:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95662.8 NaN 186 652 839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 842 17.02 NaN 122110 35 0 21513 0.411 + 27603 TAGRHGDDL 9 61 471.22531455218416 940.4360761711683 2 471.22509765625 MULTI HCD FTMS 0 0 0 841 54988.84765625 0.05816950530818438 33 -0.26366615295410156 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 47.7319792270244 0.034743597693959835 1 [TA]{[NV]|[RG]}HGDD{I|L} 9 0 + 64.804 0 0 6.8908 6.8908 91.957 0 0 0 15.708253071758875 15.708253071758875 15.708253071758875 15.708253071758875 0 1.6237125054200234 1.6989700043360187 0.3494850021680094 0 + + [TA]{[NV]|[RG]}HGDD{I|L};TA{[NV]|[RG]}HGDD{I|L};T[WM][Y{I|L}]D{I|L} 6.8908;5.2205;1.5641 +;+;- + 87 NaN NaN 118954.3 NaN 187 653 841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 844 17.028 NaN 44208 35 0 9223.1 0.411 + 21978 QERYPRPR 8 26 551.2986855850806 1100.5828182369612 2 551.2988891601562 MULTI HCD FTMS 0 0 0 843 8798.9306640625 0.45308197248572357 -2 0.016033172607421875 1 Unmodified _QERYPRPR_ REV__ENST00000261402.6_1_12:106533091-106533277:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88216 NaN 188 654 843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 850 17.066 NaN 27252 35 0 4313.1 0.411 + 34901 YSHLVGHRR 9 15 562.8070323061474 NaN 0 562.8074340820312 PEAK HCD FTMS 0 0 0 849 3588.598388671875 0.5911502522108263 -7 0.0537261962890625 1 Unmodified _YSHLVGHRR_ ENSG00000204611|ENST00000600228|ZNF616 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83664.6 NaN 189 659 849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 854 17.089 NaN 54770 35 0 6950.3 0.326 + 4351 EVYPEARKK 9 28 560.311482319487 1118.608411705774 2 560.311279296875 MULTI HCD FTMS 0 0 0 853 27716.7734375 0.6043919154601888 10 -0.08417320251464844 1 Unmodified _EVYPEARKK_ ENSG00000150459|ENST00000382533|SAP18;ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18 9.38312468134398 0.279288223203164 1 {NN|[MP]|[D{I|L}]|[EV]}Y 3 6 27.447 0 0 2.4537 0 0 0 724.410935142836 724.410935142836 27.447274948966935 0 0 0 0 0 1.6989700043360187 0 0 + {NN|[MP]|[D{I|L}]|[EV]}Y 2.4537 + + 3 + NaN NaN 93507.9 NaN 190 662 853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 855 17.093 NaN 46134 35 0 10397 0.261 + 4165 ETQGQQPPQR 10 25 584.7892925803852 NaN 0 584.7890014648438 PEAK HCD FTMS 0 0 0 853 28025.4140625 0.8610392228870983 5 -0.04636192321777344 2 Unmodified _ETQGQQPPQR_ ENSG00000065978|ENST00000321358|YBX1;ENST00000442962.2_1_9:112295731-112296019:-|nuORF;ENST00000444752.1_1_9:35971343-35971724:-|nuORF 11.494710602746466 0.33034640988000663 1 Q 1 9 8.2268 0 0 0.70461 0 0 543.2293897488579 493.25310265407074 1036.4824924029285 0 0 0 0 0 0.4247425010840047 0 0 0 + Q 0.70461 + + 3 + NaN NaN 94398.7 NaN 191 662 853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 858 17.107 NaN 77882 35 0 8514.5 0.327 -1 NAESGRGQVM 10 36 532.7431594250739 1063.4717659169478 2 532.7428588867188 MULTI HCD FTMS 0 0 0 857 42061.7265625 0.12353842680190671 75 -0.6010894775390625 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 37.07464296494664 0.1707926854601146 1 HV{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.333 0 0 662.3180102225655 0 662.3180102225655 0 9.643331241078172 0 0 0 0.9247425010840047 0 0 0 HV{M(Oxidation (M))|F} 3.333 - 20 NaN NaN 99452.7 NaN 192 664 857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 859 17.111 NaN 26700 35 0 5271.7 0.261 + 28629 TREKIYAI 8 21 497.2899263486101 NaN 0 497.2898864746094 PEAK HCD FTMS 0 0 0 857 5212.07568359375 0.5649680993991221 1 -0.013240814208984375 2 Unmodified _TREKIYAI_ ENSG00000134897|ENST00000257336|BIVM 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74138.2 NaN 193 664 857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 860 17.114 NaN 31034 35 0 6548 0.261 -1 MGILPTVRST 10 20 545.7990684450226 1089.5835839568451 2 545.798095703125 MULTI HCD FTMS 0 0 0 857 7536.82080078125 0.3204434604070261 -7 0.055088043212890625 3 Oxidation (M) _M(Oxidation (M))GILPTVRST_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 1.6526216038709556 0.46655611578153744 1 D 1 -1 3.0989 0 0 0.28442 0 0 562.3065586656327 409.23395715885005 971.5405158244828 0 0 0 0 0 0 0 0 0 D 0.28442 - 3 + NaN NaN 84456.1 NaN 194 664 857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 863 17.127 NaN 15129 35 0 2886.7 0.411 + 23507 RMYKRERSE 9 20 627.8214721679688 NaN 0 627.8214721679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RMYKRERSE_ REV__ENSG00000130943|ENST00000253255|PKDREJ 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89279.1 NaN 195 666 862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 867 17.15 NaN 71912 35 0 11495 0.411 + 25274 SAVKGDEKM 9 49 482.7420915228989 963.4696301125978 2 482.7418212890625 MULTI HCD FTMS 0 0 0 866 47244.625 0.826841836339157 2 -0.015508651733398438 1 Unmodified _SAVKGDEKM_ ENSG00000117751|ENST00000311772|PPP1R8 35.61225514009592 0.08548698421724198 1 {[SA]|[TG]}V[DG]KEKM 9 2 + 49.944 0 0 5.1838 5.1838 85.072 0 0 0 7.715299873086607 13.878493940035447 7.715299873086607 7.715299873086607 0 1.6861818737241734 0 0.5 0 {[SA]|[TG]}V[DG]KEKM;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[DG]KEKM;{[SA]|[TG]}V[DG]KV{[SA]|[TG]}M;{[SA]|[TG]}VK[DG]EKM;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[DG]KV{[SA]|[TG]}M 5.1838;4.383;3.9156;3.7433;3.1092 -;-;-;+;- + 58 NaN NaN 102156 NaN 196 669 866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 871 17.173 NaN 46578 35 0 9556.7 0.411 + 31117 VTNAQGQIIGT 11 26 551.2986855850806 1100.5828182369612 2 551.2989501953125 MULTI HCD FTMS 0 0 0 870 2138.529052734375 0.11011894495183558 16 -0.12877464294433594 1 Unmodified _VTNAQGQIIGT_ ENSG00000106536|ENST00000518318|POU6F2;nc|ENSG00000106536|P78424-2|POU6F2;nc|ENSG00000106536|P78424|POU6F2 0 0.41892066650488113 1 N 1 10 1.9897 0 0 0.18079 0 0 531.7200385512175 451.8088284811868 983.5288670324044 0 0 0 0 0 0 0 0 0 + N 0.18079 + + 2 + NaN NaN 97648.8 NaN 197 672 870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 876 17.203 NaN 28184 35 0 3893.6 0.327 + 28309 TLVEREKCL 9 19 545.7990684450226 1089.5835839568451 2 545.7998657226562 MULTI HCD FTMS 0 0 0 875 15564.3798828125 0.6617516696457673 5 -0.04032707214355469 1 Unmodified _TLVEREKCL_ ENST00000524817.5_1_11:9685687-9762009:+|nuORF 2.9952420565917617 0.3283108881486655 1 KC{I|L} 3 6 26.198 0 0 2.4044 0 0 727.3863392560562 0 727.3863392560562 0 26.197887582883936 0 0 0 0 0 0 0 + KC{I|L} 2.4044 + + 3 NaN NaN 86332.1 NaN 198 676 875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 877 17.208 NaN 44248 35 0 11413 0.261 + 3355 EEPLVMPVW 9 28 550.278284422299 1098.5420159113978 2 550.278564453125 MULTI HCD FTMS 0 0 0 875 7304.63134765625 0.4968943532039901 -6 0.04517173767089844 2 Unmodified _EEPLVMPVW_ ENST00000520944.5_1_8:67834940-67837798:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90937.1 NaN 199 676 875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 881 17.228 NaN 63568 35 0 6339.7 0.411 -1 NAESGRGQVM 10 36 532.7431594250739 1063.4717659169478 2 532.7429809570312 MULTI HCD FTMS 0 0 0 880 36337.0546875 0.10672463870541096 90 -0.7270412445068359 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 32.89776655970281 0.20703914202719614 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 -1 + 55.775 0 0 5.2446 5.2446 89.734 0 0 0 7.269987279362624 9.414543788274798 7.269987279362624 20.194093936868278 0 2.610924374808178 0 0 0 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F} 5.2446;3.3457 +;- + 66 + NaN NaN 100167.8 NaN 200 679 880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 886 17.259 NaN 12645 35 0 2392.2 0.411 -1 WFQKRMLC 8 19 584.7892925803852 NaN 0 584.7888793945312 PEAK HCD FTMS 0 0 0 885 9415.4580078125 0.28927596317018667 26 -0.2083892822265625 1 Carbamidomethyl (C) _WFQKRMLC(Carbamidomethyl (C))_ ENST00000328032.8_1_2:163695097-163695211:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81242.9 NaN 201 683 885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 888 17.267 NaN 26656 35 0 5732 0.327 + 28108 TIFNHFRR 8 23 545.7990684450226 1089.5835839568451 2 545.7981567382812 MULTI HCD FTMS 0 0 0 887 8434.103515625 0.35859328321801 13 -0.10699462890625 1 Unmodified _TIFNHFRR_ REV__sp|P03187|TRX1_EBVB9Triplexcapsidprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX1PE=1SV=1 0.6903765706972694 0.5409681170271811 1 {I|L} 1 -1 2.4743 0 0 0.22708 0 0 544.7291660875077 428.7424410455688 973.4716071330765 0 0 0 0 0 0 0 0 0 {I|L} 0.22708 + + 1 + NaN NaN 84176.5 NaN 202 684 887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 889 17.271 NaN 44152 35 0 11165 0.261 -1 MMGLFPRT 8 20 513.7411486349217 NaN 0 513.740966796875 PEAK HCD FTMS 0 0 0 887 1604.72412109375 0.39175985611641145 1 -0.009983062744140625 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))M(Oxidation (M))GLFPRT_ DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;DSG3|p.M40Kfs*13|1|0.11|ENSG00000134757|chr18:31457026-31457027|-/AGACTGTTAGGTATCTAATTAGCTC|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3 2.577480529830294 0.38822285293237185 1 R 1 -1 6.9897 0 0 0.68161 0 0 119.04857932968612 747.2747286432249 866.323307972911 0 0 0 0 0 0 0 0 0 R 0.68161 + + 1 + NaN NaN 88524.1 NaN 203 684 887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 892 17.284 NaN 22403 35 0 5344.1 0.412 + 4192 ETVTKSYQK 9 31 542.2875133040308 1082.5604736748614 2 542.2870483398438 MULTI HCD FTMS 0 0 0 891 3722.865234375 0.2680391017003637 -7 0.055767059326171875 1 Unmodified _ETVTKSYQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84552.5 NaN 204 686 891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 894 17.292 NaN 17179 35 0 6423 0.327 + -1 SMHRLMQYM 9 13 606.7711966208412 NaN 0 606.7713623046875 PEAK HCD FTMS 0 0 0 893 15997.025390625 0.7118185679270452 88 -0.7142238616943359 1 Oxidation (M) _SMHRLM(Oxidation (M))QYM_ REV__ENSG00000141837|ENST00000360228|CACNA1A;REV__nc|ENSG00000141837|O00555-2|CACNA1A;REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__nc|ENSG00000141837|O00555-6|CACNA1A 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83199.7 NaN 205 687 893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 895 17.297 NaN 16080 35 0 4882.5 0.261 + 17779 MEQLFKYRE 9 13 622.3107783369699 1242.6070037407396 2 622.3109130859375 MULTI HCD FTMS 0 0 0 893 1464.999267578125 0.09398823880853609 -13 0.10329055786132812 2 Unmodified _MEQLFKYRE_ REV__ENSG00000159086|ENST00000331923|PAXBP1;REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;REV__nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;REV__nc|ENSG00000159086|Q9Y5B6-4|PAXBP1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91945.2 NaN 206 687 893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 898 17.31 NaN 31902 35 0 5733.9 0.411 + -1 HFCARCAS 8 32 476.1981977256181 NaN 0 476.1982727050781 PEAK HCD FTMS 0 0 0 897 7853.2705078125 0.4540492554364807 -267 2.0988283157348633 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 N 1 -1 5.4846 0 0 0.57709 0 0 361.451313808855 471.8547457330688 833.3060595419238 0 0 0 0 0 0 0 0 0 N 0.57709 - 1 + NaN NaN 98168.7 NaN 207 689 897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 901 17.325 NaN 15892 35 0 4378.6 0.327 + -1 LLEMYFCMW 9 12 626.2655454668295 1250.516538000459 2 626.2655029296875 MULTI HCD FTMS 0 0 0 900 2066.5888671875 0.16933668455907536 -8 0.0665283203125 1 Oxidation (M) _LLEM(Oxidation (M))YFCMW_ REV__ENST00000555705.1_1_14:35005347-35005473:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86356.8 NaN 208 691 900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 902 17.33 NaN 44180 35 0 10469 0.261 -1 YVPDMVWW 8 21 556.2493540650908 1110.4841551969814 2 556.2489013671875 MULTI HCD FTMS 0 0 0 900 7731.7490234375 0.15948210256876758 -16 0.12896728515625 2 Oxidation (M) _YVPDM(Oxidation (M))VWW_ ENST00000573872.5_1_16:3721765-3727644:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87932 NaN 209 691 900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 904 17.335 NaN 20234 35 0 2456.9 0.411 -1 RLNCGHMRAL 10 28 622.3107783369699 1242.6070037407396 2 622.3084106445312 MULTI HCD FTMS 0 0 0 903 8240.1865234375 0.5286559767856152 -9 0.0764312744140625 1 Carbamidomethyl (C),Oxidation (M) _RLNC(Carbamidomethyl (C))GHM(Oxidation (M))RAL_ ENSG00000136002|ENST00000409359|ARHGEF4 3.5964929083625545 0.45626689593999237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84821.8 NaN 210 692 903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 907 17.351 NaN 62350 35 0 5911.4 0.412 + 18877 NAESGRGQVM 10 45 532.7431594250739 1063.4717659169478 2 532.7430419921875 MULTI HCD FTMS 0 0 0 906 25391.96875 0.0745781053023833 105 -0.8477344512939453 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 61.08992128646608 0.03745793995309655 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 0 + 56.545 0 0 5.317 5.317 91.127 0 0 0 8.136955994924264 56.544927940339775 8.136955994924264 37.42992819099939 0 2.6307196863200843 0 0.3054621874040891 0.7059771852360797 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}[{M(Oxidation (M))|F}V]{[QG]|[NA]} 5.317;1.7974 +;- + 52 NaN NaN 108051.7 NaN 211 694 906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 912 17.381 NaN 38169 35 0 10145 0.412 + 23394 RLDANLQGPF 10 24 565.8001333058871 NaN 0 565.7996215820312 PEAK HCD FTMS 0 0 0 911 9639.5029296875 0.7493804289335816 -53 0.429718017578125 1 Unmodified _RLDANLQGPF_ REV__CON__ENSEMBL:ENSBTAP00000025008;REV__ENSG00000101162|ENST00000217133|TUBB1;REV__ENSG00000104833|ENST00000264071|TUBB4A;REV__ENSG00000137267|ENST00000333628|TUBB2A;REV__ENSG00000137285|ENST00000259818|TUBB2B;REV__ENSG00000173213|ENST00000308911|TUBB8B;REV__ENSG00000176014|ENST00000317702|TUBB6;REV__ENSG00000188229|ENST00000340384|TUBB4B;REV__ENSG00000196230|ENST00000327892|TUBB;REV__ENSG00000258947|ENST00000315491|TUBB3;REV__ENSG00000261456|ENST00000568584|TUBB8;REV__ENST00000417736.2_1_18:12308439-12326126:+|nuORF;REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF;REV__ENST00000604929.1_1_9:140136931-140138005:+|nuORF;REV__nc|ENSG00000258947|Q13509-2|TUBB3;REV__TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92638.9 NaN 212 698 911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 917 17.411 NaN 22988 35 0 4156.4 0.411 + 3699 ELSPPAKDQV 10 18 542.2875133040308 1082.5604736748614 2 542.28759765625 MULTI HCD FTMS 0 0 0 916 10680.0048828125 0.7689397103371506 9 -0.07110786437988281 1 Unmodified _ELSPPAKDQV_ ENSG00000170871|ENST00000307659|KIAA0232 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102849.2 NaN 213 702 916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 919 17.419 NaN 21877 35 0 2494.4 0.411 + 19307 NLYTFDMRAL 10 26 622.3107783369699 1242.6070037407396 2 622.310302734375 MULTI HCD FTMS 0 0 0 918 9540.0205078125 0.612047900343948 2 -0.015567779541015625 1 Unmodified _NLYTFDMRAL_ CEP135-DCAF13|1|fusion;ENSG00000164934|ENST00000612750|DCAF13 6.2057823575117 0.44245551207394906 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89224.7 NaN 214 703 918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 924 17.45 NaN 76253 35 0 10245 0.327 -1 KYCEIPACQ 9 42 556.2493540650908 1110.4841551969814 2 556.249267578125 MULTI HCD FTMS 0 0 0 923 48480.35546875 1 0 0 1 Carbamidomethyl (C) _KYCEIPAC(Carbamidomethyl (C))Q_ ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1 7.289230182591677 0.29575926068275815 1 TE 2 -1 15.217 0 0 1.3703 0 0 182.10325700248592 695.2698458307249 877.3731028332109 0 0 0 0 0 0 0 0.4247425010840047 0 TE 1.3703 - 17 + NaN NaN 99384.6 NaN 215 707 923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 925 17.454 NaN 18437 35 0 4708.6 0.261 + -1 CYGCYNRIM 9 16 626.7510842956657 NaN 0 626.2653198242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))YGC(Carbamidomethyl (C))YNRIM(Oxidation (M))_ REV__tr|U7SJ15|U7SJ15_FUSNUDNAhelicaseRecQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02060PE=3SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83023.4 NaN 216 707 923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 929 17.474 NaN 59160 35 0 5658 0.411 -1 NAESGRGQVM 10 44 532.7431594250739 1063.4717659169478 2 532.7429809570312 MULTI HCD FTMS 0 0 0 928 27560.2265625 0.08094644015091056 121 -0.9973659515380859 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 30.7034409873982 0.22608124881558994 1 V{M(Oxidation (M))|F} 2 -1 28.583 0 0 2.6878 0 0 799.3553333966812 0 799.3553333966812 0 4.885606273598313 0 0 0 0.7614393726401688 0 0 0 V{M(Oxidation (M))|F} 2.6878 + + 17 NaN NaN 97797.6 NaN 217 710 928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 933 17.497 NaN 18020 35 0 2899.5 0.327 + 9622 HTINGHNAEVR 11 17 624.3157484886535 1246.616944044107 2 624.31494140625 MULTI HCD FTMS 0 0 0 932 11316.876953125 0.6703815335039723 -12 0.09344863891601562 1 Unmodified _HTINGHNAEVR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000495810.1_1_7:26235422-26236427:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88775.1 NaN 218 713 932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 934 17.502 NaN 25482 35 0 5780.4 0.261 + 5496 FKIHNWLM 8 18 544.7884841753487 1087.5624154174973 2 544.7880859375 MULTI HCD FTMS 0 0 0 932 3336.970703125 0.38821677011174704 1 -0.01324462890625 2 Unmodified _FKIHNWLM_ ENST00000331173.5_1_10:53458777-53458861:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92375.2 NaN 219 713 932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 935 17.505 NaN 34668 35 0 10442 0.261 + -1 SMGGWCHIRFC 11 18 476.1981977256181 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 932 12906.615234375 0.7462163733623199 -243 1.9205207824707031 3 2 Carbamidomethyl (C),Oxidation (M) _SM(Oxidation (M))GGWC(Carbamidomethyl (C))HIRFC(Carbamidomethyl (C))_ REV__ENSG00000167280|ENST00000579016|ENGASE;REV__ENST00000300682.14_2_17:77078803-77082428:+|nuORF;REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF 0.08335046087909445 0.3418837022149213 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81702.4 NaN 220 713 932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 940 17.533 NaN 18640 35 0 2274.1 0.411 + 8744 HHHKEWDKH 9 30 627.2985948957229 NaN 0 627.2992553710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _HHHKEWDKH_ REV__ENSG00000079102|ENST00000436581|RUNX1T1;REV__ENST00000521078.1_1_8:92972472-92983113:-|nuORF;REV__nc|ENSG00000079102|Q06455-2|RUNX1T1;REV__nc|ENSG00000079102|Q06455-3|RUNX1T1;REV__nc|ENSG00000079102|Q06455-4|RUNX1T1;REV__nc|ENSG00000079102|Q06455|RUNX1T1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99135.3 NaN 221 717 939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 946 17.571 NaN 161340 35 0 21301 0.411 + 27585 TAEGHPKSL 9 47 470.2482480365072 938.4819431398145 2 470.2476806640625 MULTI HCD FTMS 0 0 0 945 71516.9609375 0.438601364037219 -8 0.06006050109863281 1 Unmodified _TAEGHPKSL_ ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF 57.24910588100465 0.021429789259086996 1 TAEGH[KP]S{I|L} 9 0 + 69.605 0 0 7.4167 7.4167 94.703 0 0 0 39.20818753952375 9.51090597957851 9.51090597957851 33.856051822229276 0 1.5484550065040281 1.5228787452803376 0.9559771852360797 0 + + TAEGH[KP]S{I|L};TA[YR][QT]S{I|L};[HV][NP]T[TA]S{I|L} 7.4167;3.8092;2.2474 +;-;- + 77 + NaN NaN 125043.4 NaN 222 722 945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 949 17.586 NaN 41316 35 0 10560 0.412 + 15027 LLPFIAYYM 9 27 565.8001333058871 NaN 0 565.8001098632812 PEAK HCD FTMS 0 0 0 948 7913.26611328125 0.6151817990503504 -27 0.21257781982421875 1 Unmodified _LLPFIAYYM_ ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93988.5 NaN 223 724 948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 951 17.594 NaN 53534 35 0 5243.1 0.411 -1 NAESGRGQVM 10 36 532.7431594250739 1063.4717659169478 2 532.7428588867188 MULTI HCD FTMS 0 0 0 950 30132.11328125 0.08850026318941515 136 -1.1360511779785156 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 39.212999716063884 0.15223626971197562 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 -1 + 50.22 0 0 4.7223 4.7223 86.867 0 0 0 1.588709367037282 1.588709367037282 1.588709367037282 10.339322000954276 0 2.7302046884880937 0 0 0.3252574989159953 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F};{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F} 4.7223;3.7501 +;- + 53 NaN NaN 98821.3 NaN 224 725 950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 953 17.602 NaN 30047 35 0 4530.7 0.411 -1 QEDWMKMK 8 26 556.2493540650908 1110.4841551969814 2 556.2479248046875 MULTI HCD FTMS 0 0 0 952 6869.0908203125 0.14168812818916424 19 -0.15295791625976562 1 Oxidation (M) _QEDWM(Oxidation (M))KMK_ ENSG00000186866|ENST00000349485|POFUT2;nc|ENSG00000186866|Q9Y2G5-1|POFUT2;nc|ENSG00000186866|Q9Y2G5-2|POFUT2 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90818 NaN 225 726 952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 955 17.61 NaN 29968 35 0 4305 0.327 + -1 HFCARCAS 8 23 476.1981977256181 NaN 0 476.1986389160156 PEAK HCD FTMS 0 0 0 954 7903.04931640625 0.45692729598735987 -229 1.8142452239990234 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77833.8 NaN 226 727 954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 956 17.615 NaN 44608 35 0 7774 0.261 + 14597 LFNTFVQKQ 9 26 562.8071293888989 NaN 0 562.80712890625 PEAK HCD FTMS 0 0 0 954 3496.591796875 0.559291269582169 2 -0.017963409423828125 2 Unmodified _LFNTFVQKQ_ ENSG00000162402|ENST00000294383|USP24 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104064 NaN 227 727 954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 958 17.62 NaN 12967 35 0 1753.3 0.411 + 9623 HTINGHNAEVR 11 20 624.3157484886535 1246.616944044107 2 624.8154907226562 MULTI HCD FTMS 0 0 0 957 5551.900390625 0.5305452782869492 9 -0.0718994140625 1 Unmodified _HTINGHNAEVR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000495810.1_1_7:26235422-26236427:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 2.282774691075616 0.408909192180357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84298 NaN 228 728 957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 960 17.628 NaN 28940 35 0 8942.8 0.327 -1 EYMLYKKF 8 16 569.2861291562562 1136.5577053793122 2 569.285888671875 MULTI HCD FTMS 0 0 0 959 1868.15966796875 0.2186583944332391 1 -0.00994873046875 1 Oxidation (M) _EYM(Oxidation (M))LYKKF_ PABPC5|p.D32Y|1|0.32|ENSG00000174740|chrX:91435671-91435671|G/T|missense_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82272 NaN 229 729 959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 961 17.633 NaN 13021 35 0 3956.7 0.261 -1 ADCLCRIINL 10 13 624.3157484886535 1246.616944044107 2 624.8169555664062 MULTI HCD FTMS 0 0 0 959 5998.57666015625 0.573230119341159 10 -0.079376220703125 2 2 Carbamidomethyl (C) _ADC(Carbamidomethyl (C))LC(Carbamidomethyl (C))RIINL_ ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82576.9 NaN 230 729 959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 963 17.638 NaN 11132 35 0 2241.1 0.411 + 9624 HTINGHNAEVR 11 15 624.3157484886535 1246.616944044107 2 624.8180541992188 MULTI HCD FTMS 0 0 0 962 4022.39404296875 0.38438408774592264 11 -0.08669090270996094 1 Unmodified _HTINGHNAEVR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000495810.1_1_7:26235422-26236427:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 1.0714618166137932 0.41422159895841093 1 N 1 10 3.9794 0 0 0.31922 0 0 622.7581926786758 506.80121790103755 1129.5594105797134 0 0 0 0 0 0 0 0 0 + N 0.31922 + + 2 + NaN NaN 100183.5 NaN 231 730 962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 965 17.646 NaN 22717 35 0 4097.5 0.411 + -1 VHRYGPMM 8 21 511.73080063223944 NaN 0 511.7308349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _VHRYGPM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000149527|ENST00000378486|PLCH2;REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF;REV__ENST00000462379.1_1_1:2430086-2435063:+|nuORF;REV__ENST00000473964.5_1_1:2429963-2431264:+|nuORF;REV__nc|ENSG00000149527|O75038-2|PLCH2;REV__nc|ENSG00000149527|O75038-3|PLCH2;REV__nc|ENSG00000149527|O75038-4|PLCH2;REV__nc|ENSG00000149527|O75038-5|PLCH2 0.6903765706972694 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.68429 0 0 100.06949434140672 821.3003634088499 921.3698577502566 0 0 0 0 0 0 0 0 0 P 0.68429 + + 1 + NaN NaN 93166.4 NaN 232 731 964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 968 17.662 NaN 32880 35 0 6098.2 0.411 + -1 VQPAMGHEH 9 29 511.22890528517496 NaN 0 511.2287902832031 PEAK HCD FTMS 0 0 0 967 3046.74462890625 0.46906193671632673 -12 0.09858322143554688 1 Oxidation (M) _VQPAM(Oxidation (M))GHEH_ REV__ENSG00000040933|ENST00000409851|INPP4A;REV__nc|ENSG00000040933|Q96PE3-2|INPP4A;REV__nc|ENSG00000040933|Q96PE3-4|INPP4A;REV__nc|ENSG00000040933|Q96PE3|INPP4A 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95107.9 NaN 233 733 967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 973 17.692 NaN 195230 35 0 20982 0.411 + 27586 TAEGHPKSL 9 61 470.2482480365072 938.4819431398145 2 470.2480773925781 MULTI HCD FTMS 0 0 0 972 91519.3359375 0.5612725296457649 7 -0.05509757995605469 1 Unmodified _TAEGHPKSL_ ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF 84.5221896805406 0.004669506596793478 1 TAEGHPKS{I|L} 9 0 + 86.481 0 0 9.215 9.215 98.738 0 0 0 67.01721569349729 16.43938964343363 16.43938964343363 86.48116584525795 0 1.8851518780601921 1.6989700043360187 1.079689690656103 0 + + TAEGHPKS{I|L} 9.215 + + 72 + NaN NaN 150298.3 NaN 234 737 972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 977 17.715 NaN 51902 35 0 5182.9 0.327 -1 NAESGRGQVM 10 30 532.7431594250739 1063.4717659169478 2 532.742919921875 MULTI HCD FTMS 0 0 0 976 27758.615234375 0.08152912247096082 151 -1.2745208740234375 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 24.881564428377168 0.27837825820855233 1 V{M(Oxidation (M))|F} 2 -1 29.024 0 0 2.7291 0 0 799.3577542743797 0 799.3577542743797 0 2.8258344212375164 0 0 0 0.805462187404089 0 0 0 V{M(Oxidation (M))|F} 2.7291 + + 13 NaN NaN 103000.4 NaN 235 740 976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 978 17.719 NaN 29022 35 0 7044.5 0.261 -1 PQYLEMEFK 9 19 600.7840488739274 1199.5535448146547 2 600.7838745117188 MULTI HCD FTMS 0 0 0 976 12047.9775390625 0.04578608055356303 -17 0.1363697052001953 2 Oxidation (M) _PQYLEM(Oxidation (M))EFK_ ENSG00000164880|ENST00000404767|INTS1 1.6526216038709556 0.33848895094777925 1 {[ES]|[DT]|[{I|L}C]}A 3 -1 10.458 0 0 0.87179 0 0 0 909.4201988746661 909.4201988746661 10.45757490560675 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}A 0.87179 - 1 + NaN NaN 81584.5 NaN 236 740 976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 983 17.747 NaN 29284 35 0 12480 0.411 + 32534 WHMRKKPR 8 27 569.8246360617788 NaN 0 569.8245849609375 PEAK HCD FTMS 0 0 0 982 5356.908203125 0.5021345051294763 -62 0.49595069885253906 1 Unmodified _WHMRKKPR_ ENST00000243643.8_1_19:53619685-53636133:-|nuORF;ENST00000600120.5_1_19:53619685-53636050:-|nuORF 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101982.2 NaN 237 744 982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 988 17.781 NaN 25715 35 0 5544.8 0.411 + 829 AVSTVTKTER 10 25 546.30630503956 1090.59805714592 2 546.3058471679688 MULTI HCD FTMS 0 0 0 987 5817.35888671875 0.6463889906166329 -3 0.025526046752929688 1 Unmodified _AVSTVTKTER_ ENSG00000183963|ENST00000333137|SMTN;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000493335.5_1_22:31492537-31494796:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN 2.498486711656943 0.462078817294651 1 V 1 9 6.9897 0 0 0.64091 0 0 358.1839468937699 630.3216646783811 988.5056115721511 0 0 0 0 0 0 0 0 0 + V 0.64091 + + 3 + NaN NaN 108772.6 NaN 238 748 987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 992 17.804 NaN 22846 35 0 5576.9 0.411 + -1 PDLYRCLSY 9 24 614.7876430242495 NaN 0 614.7874145507812 PEAK HCD FTMS 0 0 0 991 4896.81103515625 0.5782508352595543 1 -0.008022308349609375 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))PDLYRC(Carbamidomethyl (C))LSY_ REV__ENST00000318130.12_1_1:184695431-184695464:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108661.7 NaN 239 751 991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 995 17.819 NaN 32809 35 0 5693.4 0.411 + -1 STSWCRPQ 8 27 511.22890528517496 NaN 0 511.22930908203125 PEAK HCD FTMS 0 0 0 994 1529.857421875 0.23552938385326513 7 -0.06928634643554688 1 Carbamidomethyl (C) _STSWC(Carbamidomethyl (C))RPQ_ REV__PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.24247 0 0 344.6105072482812 525.7663057916624 870.3768130399435 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.24247 - 1 + NaN NaN 94059.2 NaN 240 753 994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 998 17.835 NaN 43474 35 0 6294.1 0.327 -1 NAESGRGQVM 10 29 532.7431594250739 1063.4717659169478 2 532.7431030273438 MULTI HCD FTMS 0 0 0 997 25099.21484375 0.07371826525362786 166 -1.4090843200683594 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 18.373094154950223 0.33925629317698053 1 {[QG]|[NA]}ES 4 -1 25.445 0 0 2.3927 0 0 0 659.2951143854124 659.2951143854124 1.8618187372417339 0 0 0 0 0.9247425010840047 0 0 0 {[QG]|[NA]}ES 2.3927 + + 10 + NaN NaN 86815.4 NaN 241 755 997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 999 17.839 NaN 17278 35 0 5444.6 0.261 + -1 TRCTSCCTCV 10 14 624.2359443138928 NaN 0 624.236083984375 PEAK HCD FTMS 0 0 0 997 2168.06005859375 0.3815181652567415 -4 0.031099319458007812 2 3 Carbamidomethyl (C) _TRC(Carbamidomethyl (C))TSC(Carbamidomethyl (C))C(Carbamidomethyl (C))TCV_ REV__ENSG00000068615|ENST00000538924|REEP1 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96723.3 NaN 242 755 997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1000 17.843 NaN 20336 35 0 4929.6 0.261 + 18098 MNYAEYWYD 9 16 627.7412263192638 NaN 0 627.7418823242188 PEAK HCD FTMS 0 0 0 997 3537.20703125 0.951380718157041 -1 0.007556915283203125 3 Unmodified _MNYAEYWYD_ REV__ENSG00000121653|ENST00000241014|MAPK8IP1 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83410.5 NaN 243 755 997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1002 17.848 NaN 493260 35 0 141230 0.327 + -1 ESPAEFMVKF 10 54 600.7840488739274 1199.5535448146547 2 600.7838134765625 MULTI HCD FTMS 0 0 0 1001 255664.28125 0.9716041831940677 -1 0.0132293701171875 1 Oxidation (M) _ESPAEFM(Oxidation (M))VKF_ REV__ENSG00000114841|ENST00000420323|DNAH1;REV__ENST00000486752.5_1_3:52422617-52434459:+|nuORF 12.240655878213236 0.39661705172222156 1 {[ES]|[DT]|[{I|L}C]}APEGQAQQR 11 -1 {[ES]|[DT]|[{I|L}C]} + + 74.391 0.85348 0.39499 6.2015 6.2015 63.621 0 0 0 0 37.04628427264403 0 0 0 1.552887198244136 0 0 1.1237125054200234 {[ES]|[DT]|[{I|L}C]}APEGQAQQR 6.2015 - 669 + NaN NaN 174174.9 NaN 244 756 1001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1003 17.852 NaN 23571 35 0 4691.9 0.261 + -1 CYEMIICYCP 10 23 627.2393820513131 NaN 0 627.239990234375 PEAK HCD FTMS 0 0 0 1001 2203.567138671875 0.2866342320083712 1 -0.016759872436523438 2 Oxidation (M) _CYEM(Oxidation (M))IICYCP_ REV__ENSG00000073803|ENST00000265026|MAP3K13;REV__ENST00000433092.5_1_3:185155245-185169222:+|nuORF;REV__ENST00000477582.1_1_3:185155245-185161425:+|nuORF;REV__nc|ENSG00000073803|O43283-4|MAP3K13;REV__nc|ENSG00000073803|O43283-5|MAP3K13 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78102.6 NaN 245 756 1001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1004 17.856 NaN 25434 35 0 5562.5 0.261 + 3462 EFYVREIR 8 12 556.2968895743642 NaN 0 556.2969360351562 PEAK HCD FTMS 0 0 0 1001 1920.6602783203125 0.34135471013360824 -4 0.03630638122558594 3 Unmodified _EFYVREIR_ REV__ENSG00000198626|ENST00000366574|RYR2;REV__nc|ENSG00000198626|Q92736-2|RYR2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80233.9 NaN 246 756 1001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1005 17.859 NaN 26100 35 0 6271.3 0.261 + 35213 YVLKLMKK 8 15 511.82442207912084 NaN 0 512.271240234375 PEAK HCD FTMS 0 0 0 1001 1568.204345703125 0.7717661615327849 -1 0.0132293701171875 4 Unmodified _YVLKLMKK_ REV__ENSG00000172489|ENST00000313033|OR5T3;REV__nc|ENSG00000172489|Q8NGG3|OR5T3 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86803.5 NaN 247 756 1001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1007 17.865 NaN 30174 35 0 5522.1 0.411 + 31020 VSMAVHRIGR 10 23 563.3190051179885 NaN 0 563.3191528320312 PEAK HCD FTMS 0 0 0 1006 1592.4326171875 0.36781168702789324 1 -0.008205413818359375 1 Unmodified _VSMAVHRIGR_ ENSG00000107938|ENST00000356792|EDRF1;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;nc|ENSG00000107938|Q3B7T1-5|EDRF1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85636.9 NaN 248 757 1006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1009 17.873 NaN 195020 35 0 24396 0.411 + 8561 HATESEHSL 9 51 505.7305284629844 1009.4465039927688 2 505.7302551269531 MULTI HCD FTMS 0 0 0 1008 33737.53515625 0.09812812569476295 -15 0.1330890655517578 1 Unmodified _HATESEHSL_ ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1 85.27202061508552 0.004649858145912257 1 [HA]TE{[ES]|[DT]|[{I|L}C]}HS{I|L} 9 0 + 46.316 0 0 4.5883 4.5883 80.788 0 0 0 0.33301228703550123 0.33301228703550123 0.33301228703550123 0.33301228703550123 0 1.8424778212679485 0 1.1747425010840047 0 + + [HA]TE{[ES]|[DT]|[{I|L}C]}HS{I|L};HATE{[ES]|[DT]|[{I|L}C]}HS{I|L};HVH{[MG]|[TS]}DDS{I|L} 4.5883;4.5553;0.94708 +;+;- + 73 NaN NaN 154295 NaN 249 758 1008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1020 17.947 NaN 20420 35 0 5800 0.411 + 26434 STIINWER 8 22 509.76952435213923 NaN 0 509.7679748535156 PEAK HCD FTMS 0 0 0 1019 3888.857666015625 0.6749279957248693 -2 0.014764785766601562 1 Unmodified _STIINWER_ ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89041 NaN 250 768 1019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1023 17.963 NaN 142100 35 0 42791 0.327 + 8039 GGSLLGAARH 10 38 469.76193896630485 937.5093249994097 2 469.7616271972656 MULTI HCD FTMS 0 0 0 1022 37306.05859375 0.4678712152201976 -3 0.022935867309570312 1 Unmodified _GGSLLGAARH_ ENSG00000181027|ENST00000318584|FKRP 32.78568957990786 0.20801173326193015 1 [TA]AAVAAARH 10 6 + 56.909 0 0 6.0702 6.0702 90.151 0 0 0 52.92973159429401 14.146518864155126 14.146518864155126 14.095019080956064 0 2.0356668758921828 0 0 0 [TA]AAVAAARH;[TA]AAV{[NV]|[RG]}RH;[TA]AA[Q{I|L}]ARH;[TA]A[Q{I|L}]AARH;[TA][Q{I|L}]AAARH;[TA][Q{I|L}]{[NV]|[RG]}RH 6.0702;4.5668;4.0062;3.1898;2.7082;1.2105 -;-;-;-;-;- 120 + NaN NaN 114085.8 NaN 251 770 1022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1024 17.967 NaN 50263 35 0 10161 0.261 -1 NAESGRGQVM 10 27 532.7431594250739 1063.4717659169478 2 532.7428588867188 MULTI HCD FTMS 0 0 0 1022 14292.509765625 0.04197816675148999 181 -1.5425434112548828 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 8.97624648632007 0.42715123575657504 1 HV{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.4634 0 0 662.3174915998062 0 662.3174915998062 0 11.49288766643714 0 0 0 0 0 0 0 HV{M(Oxidation (M))|F} 2.4634 - 7 NaN NaN 92654.6 NaN 252 770 1022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1026 17.973 NaN 165540 35 0 48170 0.411 + -1 GETPMDIFKF 10 49 600.7840488739274 1199.5535448146547 2 600.78369140625 MULTI HCD FTMS 0 0 0 1025 105316.5625 0.40023585689922997 14 -0.1136474609375 1 Oxidation (M) _GETPM(Oxidation (M))DIFKF_ REV__ENSG00000001626|ENST00000003084|CFTR;REV__nc|ENSG00000001626|P13569-2|CFTR 8.745405648335112 0.42901288225909884 1 {[ES]|[DT]|[{I|L}C]}APEGQAQ{[{M(Oxidation (M))|F}H]|[RQ]} 11 -1 {[ES]|[DT]|[{I|L}C]} + + 65.851 1.527 0.70669 5.4897 5.4897 62.406 0 0 0 0 36.46591250700361 0 0 0 1.0484550065040281 0 0 0.7742275032520141 {[ES]|[DT]|[{I|L}C]}APEGQAQ{[{M(Oxidation (M))|F}H]|[RQ]} 5.4897 - 249 + NaN NaN 132985.7 NaN 253 771 1025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1029 17.988 NaN 28441 35 0 5189 0.411 + 3571 EIYTKTDSK 9 32 542.7798655875287 1083.5451782418572 2 542.77978515625 MULTI HCD FTMS 0 0 0 1028 10167.494140625 0.7563813758182043 -6 0.048397064208984375 1 Unmodified _EIYTKTDSK_ ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13 8.155526934196011 0.2891920862272901 1 {[QN]|[E{I|L}]|[KN]}Y 3 6 5.6864 0 0 0.52479 0 0 0 675.3342989557249 675.3342989557249 5.686362358410124 0 0 0 0 0 0 0 0 + {[QN]|[E{I|L}]|[KN]}Y 0.52479 + + 2 + NaN NaN 85642.4 NaN 254 773 1028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1031 17.996 NaN 614780 35 0 59855 0.327 + 8562 HATESEHSL 9 58 505.7305284629844 1009.4465039927688 2 505.73028564453125 MULTI HCD FTMS 0 0 0 1030 304839.28125 0.8866476809483116 1 -0.009939193725585938 1 Unmodified _HATESEHSL_ ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1 156.15588289589118 2.3186882095317417E-06 1 HATE{[ES]|[DT]|[{I|L}C]}HS{I|L} 9 0 + 83.826 0 0 8.3042 8.3042 87.991 0 0 0 1.8803907630432803 1.8803907630432803 1.8803907630432803 1.8803907630432803 0 2.555462187404089 1.5228787452803376 1.7971062485323515 0 + + HATE{[ES]|[DT]|[{I|L}C]}HS{I|L};[HA]TE{[ES]|[DT]|[{I|L}C]}HS{I|L};[HA]TD{[ET]|[MV]}HS{I|L};[HA]TE{[ES]|[DT]|[{I|L}C]}{[TV]|[{I|L}S]}H;[HA]TD{[ET]|[MV]}{[TV]|[{I|L}S]}H 8.3042;8.1179;6.9991;4.859;3.7401 +;+;-;-;- + 376 + NaN NaN 172076.3 NaN 255 774 1030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1032 18.001 NaN 30642 35 0 11046 0.261 + 19223 NKFPYLDR 8 22 526.7778297919133 NaN 0 526.7778930664062 PEAK HCD FTMS 0 0 0 1030 7615.3330078125 1 0 0 2 Unmodified _NKFPYLDR_ REV__ENST00000242067.10_1_7:33423358-33423430:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80665.3 NaN 256 774 1030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1036 18.021 NaN 37030 35 0 5361.4 0.327 + 33945 YLSDWILHG 9 17 552.2795008404161 1102.544448747632 2 552.2796630859375 MULTI HCD FTMS 0 0 0 1035 5151.7353515625 0.3433873657321166 -12 0.09598731994628906 1 Unmodified _YLSDWILHG_ ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF;nc|ENSG00000132837|Q9UI17-2|DMGDH 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86476.1 NaN 257 777 1035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1037 18.026 NaN 51011 35 0 11478 0.261 + 28223 TLERALLVTD 10 27 565.8247208609006 1129.634888788601 2 565.8251342773438 MULTI HCD FTMS 0 0 0 1035 6310.3291015625 0.6603713250375624 -2 0.014936447143554688 2 Unmodified _TLERALLVTD_ ENST00000476047.1_1_3:76483241-76483490:+|nuORF 1.3295316138638542 0.46826628246186464 1 D 1 9 3.4949 0 0 0.30938 0 0 666.8477926966074 344.7413729303344 1011.5891656269418 0 0 0 0 0 0 0 0 0 + D 0.30938 + + 4 + NaN NaN 91259.9 NaN 258 777 1035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1042 18.053 NaN 31945 35 0 6036.2 0.327 + -1 HFCARCAS 8 21 476.1981977256181 NaN 0 476.19830322265625 PEAK HCD FTMS 0 0 0 1041 12704.6728515625 0.7345407551003654 -175 1.4137248992919922 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89394.4 NaN 259 781 1041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1043 18.058 NaN 16926 35 0 4012.1 0.261 + 23735 RRCIFGKGCE 10 14 584.7892925803852 NaN 0 584.788818359375 PEAK HCD FTMS 0 0 0 1041 5927.65380859375 0.18211835934030854 124 -1.0510406494140625 2 Unmodified _RRCIFGKGCE_ REV__ENSG00000267680|ENST00000693561|ZNF224;REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89222 NaN 260 781 1041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1046 18.071 NaN 45133 35 0 16932 0.411 + 35100 YVCRTQGVE 9 22 527.7530209676212 1053.4914890020423 2 527.7529907226562 MULTI HCD FTMS 0 0 0 1045 13254.3115234375 1 0 0 1 Unmodified _YVCRTQGVE_ ENSG00000104228|ENST00000305364|TRIM35;nc|ENSG00000104228|Q9UPQ4-2|TRIM35 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99551.4 NaN 261 783 1045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1049 18.086 NaN 48140 35 0 4137.8 0.411 -1 NAESGRGQVM 10 35 532.7431594250739 1063.4717659169478 2 532.7432250976562 MULTI HCD FTMS 0 0 0 1048 18969.97265625 0.05571622398681254 196 -1.6756019592285156 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 30.7034409873982 0.22608124881558994 1 V{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.3298 0 0 799.3578358380875 0 799.3578358380875 0 0.8361343778773289 0 0 0 0.3807196863200844 0 0 0 V{M(Oxidation (M))|F} 2.3298 + + 11 NaN NaN 97727.8 NaN 262 785 1048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1051 18.094 NaN 50870 35 0 16426 0.411 + 32814 WTLTFESTCI 10 25 600.7840488739274 1199.5535448146547 2 600.7838134765625 MULTI HCD FTMS 0 0 0 1050 26865.5390625 0.10209744595242959 29 -0.2316150665283203 1 Unmodified _WTLTFESTCI_ REV__ENSG00000180263|ENST00000343958|FGD6;REV__ENST00000451107.3_1_12:95475298-95611245:-|nuORF;REV__nc|ENSG00000180263|Q6ZV73-2|FGD6 1.4819007175156935 0.4674597685733628 1 {[ES]|[DT]|[{I|L}C]}A[EP]GQAQ{[{M(Oxidation (M))|F}H]|[RQ]} 11 -1 {[ES]|[DT]|[{I|L}C]} + + 27.113 2.5084 1.1609 2.2603 2.2603 58.959 0 0 0 0 20.12333735073725 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}A[EP]GQAQ{[{M(Oxidation (M))|F}H]|[RQ]} 2.2603 - 72 + NaN NaN 107598.7 NaN 263 786 1050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1053 18.103 NaN 28953 35 0 3927.2 0.327 -1 YVMYLAIK 8 22 508.7778387664577 1015.5411245997154 2 508.77752685546875 MULTI HCD FTMS 0 0 0 1052 4892.9306640625 0.1517319300140413 -11 0.08862495422363281 1 Oxidation (M) _YVM(Oxidation (M))YLAIK_ tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1 2.8892196856762586 0.5377058178582064 1 A[K{I|L}] 3 -1 10.458 0 0 1.0298 0 0 685.3163319318375 0 685.3163319318375 0 3.4678748622465623 0 0 0 0 0 0 0 A[K{I|L}] 1.0298 + + 3 NaN NaN 89074.2 NaN 264 787 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1054 18.107 NaN 30009 35 0 11243 0.261 -1 YLEEKRTEECE 11 14 495.8889122781122 NaN 0 495.88916015625 PEAK HCD FTMS 0 0 0 1052 1596.06787109375 0.1879811675333409 4 -0.033557891845703125 2 Carbamidomethyl (C) _YLEEKRTEEC(Carbamidomethyl (C))E_ tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103682.9 NaN 265 787 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1056 18.112 NaN 41360 35 0 11614 0.411 -1 SSFDMAQKR 9 26 543.2559062133402 1084.4972594934802 2 543.2559204101562 MULTI HCD FTMS 0 0 0 1055 19980.98828125 0.6543406087550416 -4 0.033535003662109375 1 Oxidation (M) _SSFDM(Oxidation (M))AQKR_ ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5;nc|ENSG00000143248|O15539-3|RGS5 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 93286.6 NaN 266 788 1055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1058 18.121 NaN 218210 35 0 23646 0.411 + 8563 HATESEHSL 9 61 505.7305284629844 1009.4465039927688 2 505.7301025390625 MULTI HCD FTMS 0 0 0 1057 48797.4375 0.14193096971683394 16 -0.1268901824951172 1 Unmodified _HATESEHSL_ ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1 88.90359156742426 0.00455469703666567 1 HATE{[ES]|[DT]|[{I|L}C]}HS{I|L} 9 0 + 50.516 0 0 5.0044 5.0044 90.661 0 0 0 13.763966840960755 8.98711844322193 8.98711844322193 38.737676458657646 0 1.8494850021680094 0.958607314841775 0.9916440611282626 0 + + HATE{[ES]|[DT]|[{I|L}C]}HS{I|L};HVH{[MG]|[TS]}DDS{I|L} 5.0044;1.1669 +;- + 63 + NaN NaN 160536.1 NaN 267 789 1057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1062 18.143 NaN 33408 35 0 5207.6 0.327 + 5585 FLPEKHDAF 9 19 552.2795008404161 1102.544448747632 2 552.2791137695312 MULTI HCD FTMS 0 0 0 1061 13599.990234375 0.906503246357197 3 -0.0247955322265625 1 Unmodified _FLPEKHDAF_ ENSG00000151150|ENST00000280772|ANK3 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75678.7 NaN 268 792 1061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1063 18.148 NaN 36560 35 0 11155 0.261 + 30458 VLRKKEER 8 22 529.3271239714111 1056.639695009622 2 529.3275756835938 MULTI HCD FTMS 0 0 0 1061 7905.9189453125 0.4505790985324621 -7 0.057018280029296875 2 Unmodified _VLRKKEER_ ENST00000348165.9_1_7:156931958-156961760:+|nuORF 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82674.2 NaN 269 792 1061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1070 18.19 NaN 23305 35 0 5894.1 0.411 + 1753 CLFLWQGLE 9 13 554.7783662901118 1107.5421796470234 2 554.7775268554688 MULTI HCD FTMS 0 0 0 1069 6620.63720703125 0.0360678567865618 -19 0.1517333984375 1 Unmodified _CLFLWQGLE_ REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF 1.844237919475145 0.33703635659052655 1 E 1 -1 13.979 0 0 1.2622 0 0 960.491976255225 0 960.491976255225 0 13.979400086720375 0 0 0 0 0 0 0 E 1.2622 + + 1 + NaN NaN 86259.6 NaN 270 798 1069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1074 18.213 NaN 28349 35 0 9041.6 0.411 + 32815 WTLTFESTCI 10 21 600.7840488739274 1199.5535448146547 2 600.7838745117188 MULTI HCD FTMS 0 0 0 1073 17123.490234375 0.06507461527773159 44 -0.38076019287109375 1 Unmodified _WTLTFESTCI_ REV__ENSG00000180263|ENST00000343958|FGD6;REV__ENST00000451107.3_1_12:95475298-95611245:-|nuORF;REV__nc|ENSG00000180263|Q6ZV73-2|FGD6 1.4819007175156935 0.4674597685733628 1 {[ES]|[DT]|[{I|L}C]}A 3 -1 10.458 0 0 0.87179 0 0 0 909.4187482623155 909.4187482623155 3.4678748622465623 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}A 0.87179 - 6 + NaN NaN 103327.8 NaN 271 801 1073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1076 18.221 NaN 40378 35 0 4533.6 0.326 + 18996 NASRQEAKL 9 22 508.7778387664577 1015.5411245997154 2 508.7778625488281 MULTI HCD FTMS 0 0 0 1075 19611.837890625 0.6081717111021431 4 -0.03357887268066406 1 Unmodified _NASRQEAKL_ ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1 5.731851221503515 0.3075653528928475 1 A[K{I|L}] 3 6 10.458 0 0 1.0298 0 0 685.3137074201187 0 685.3137074201187 0 10.45757490560675 0 0 0 0 0 0 0 + A[K{I|L}] 1.0298 + + 1 NaN NaN 85206.8 NaN 272 802 1075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1077 18.226 NaN 44191 35 0 8797.6 0.261 -1 NAESGRGQVM 10 22 532.7431594250739 1063.4717659169478 2 532.7432250976562 MULTI HCD FTMS 0 0 0 1075 15048.3515625 0.04419813046026253 213 -1.8449840545654297 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 7.101721422024254 0.4377131641736035 1 V{M(Oxidation (M))|F} 2 -1 24.222 0 0 2.2776 0 0 799.358690330275 0 799.358690330275 0 13.764100213633766 0 0 0 0.3252574989159953 0 0 0 V{M(Oxidation (M))|F} 2.2776 + + 4 NaN NaN 81829.4 NaN 273 802 1075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1079 18.231 NaN 38879 35 0 9377 0.411 -1 SSFDMAQKR 9 28 543.2559062133402 1084.4972594934802 2 543.2550659179688 MULTI HCD FTMS 0 0 0 1078 12304.7060546875 0.4029564872890446 11 -0.08671760559082031 1 Oxidation (M) _SSFDM(Oxidation (M))AQKR_ ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5;nc|ENSG00000143248|O15539-3|RGS5 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89512.5 NaN 274 803 1078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1081 18.239 NaN 173810 35 0 24834 0.411 + 8564 HATESEHSL 9 51 505.7305284629844 1009.4465039927688 2 505.7301940917969 MULTI HCD FTMS 0 0 0 1080 22061.42578125 0.06416729473691674 31 -0.26814842224121094 1 Unmodified _HATESEHSL_ ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1 32.30548876998284 0.10066689432505688 1 HS{I|L} 3 6 29.45 0 0 2.9175 0 0 654.264940330275 0 654.264940330275 0 6.49166239860314 0 0 0 0.3252574989159953 0 0 0 + HS{I|L} 2.9175 + + 12 NaN NaN 136950 NaN 275 804 1080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1084 18.255 NaN 27708 35 0 4671.8 0.411 + 30978 VSAEQKYH 8 30 481.24059164331584 960.4666303534317 2 481.2401428222656 MULTI HCD FTMS 0 0 0 1083 5669.21875 0.693483658526242 1 -0.007976531982421875 1 Unmodified _VSAEQKYH_ REV__ENSG00000146950|ENST00000380913|SHROOM2 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88047.1 NaN 276 806 1083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1088 18.278 NaN 9667.7 35 0 2463.5 0.411 + -1 REKWLMYY 8 11 602.7943078963912 NaN 0 603.281982421875 PEAK HCD FTMS 0 0 0 1087 4149.83740234375 0.7406216735662594 -8 0.06449127197265625 1 Oxidation (M) _REKWLM(Oxidation (M))YY_ REV__tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1 0.7936320650641473 0.38822285293237185 1 G 1 -1 0.71334 0 0 0.059268 0 0 600.9146523144635 542.6170748346311 1143.5317271490946 0 0 0 0 0 0 0 0 0 G 0.059268 - 1 + NaN NaN 82553.7 NaN 277 809 1087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1093 18.308 NaN 283680 35 0 96250 0.327 + 1904 DAAHPTNVQR 10 39 554.7783662901118 1107.5421796470234 2 554.778076171875 MULTI HCD FTMS 0 0 0 1092 146571.890625 0.7984932257553237 -4 0.0302886962890625 1 Unmodified _DAAHPTNVQR_ ENSG00000168036|ENST00000349496|CTNNB1 40.72490554402381 0.1391161235525472 1 DAAHPT 6 4 61.771 0 0 5.5773 0 0 0 512.2566622369749 512.2566622369749 48.58349385648225 0 0 0 0 1.1505149978319906 0 0.8494850021680094 0 + DAAHPT 5.5773 + + 51 + NaN NaN 137069.3 NaN 278 813 1092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1094 18.313 NaN 37513 35 0 8524.1 0.261 + 28192 TKRGQAALDR 10 16 558.3174437560817 NaN 0 558.3173828125 PEAK HCD FTMS 0 0 0 1092 3638.08154296875 0.4844498673951152 -4 0.0302886962890625 2 Unmodified _TKRGQAALDR_ ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF 0 0.34018428902965525 1 P 1 10 3.9794 0 0 0.35702 0 0 556.7408312604072 457.8174227350219 1014.5582539954291 0 0 0 0 0 0 0 0 0 P 0.35702 - 1 + NaN NaN 95568.7 NaN 279 813 1092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1096 18.318 NaN 29155 35 0 5235.6 0.411 + -1 EFEESDMYCEM 11 29 495.83338842594827 NaN 0 495.75592041015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _EFEESDM(Oxidation (M))YC(Carbamidomethyl (C))EM_ REV__ENSG00000198908|ENST00000457056|GPRASP3 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90687.1 NaN 280 814 1095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1099 18.334 NaN 22800 35 0 4399.1 0.327 -1 PQYLEMEFK 9 19 600.7840488739274 1199.5535448146547 2 600.7842407226562 MULTI HCD FTMS 0 0 0 1098 6725.5986328125 0.025559377063450968 59 -0.5207023620605469 1 Oxidation (M) _PQYLEM(Oxidation (M))EFK_ ENSG00000164880|ENST00000404767|INTS1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87064.4 NaN 281 816 1098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1100 18.338 NaN 19226 35 0 4608.3 0.261 + -1 MEQHGHCTKC 10 12 615.7439372825401 1229.47332163188 2 615.7432250976562 MULTI HCD FTMS 0 0 0 1098 12389.5849609375 0.745617221066207 -12 0.09426307678222656 2 Carbamidomethyl (C) _MEQHGHC(Carbamidomethyl (C))TKC_ REV__ENST00000443967.5_1_5:175717389-175717593:+|nuORF 0.35063188157827746 0.47344775436540215 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74496.8 NaN 282 816 1098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1102 18.344 NaN 32210 35 0 5236.9 0.327 -1 NAESGRGQVM 10 21 532.7431594250739 1063.4717659169478 2 532.7430419921875 MULTI HCD FTMS 0 0 0 1101 23500.4921875 0.06902269762037301 228 -2.037302017211914 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 10.150570793230772 0.4161670024087991 1 {[QG]|[NA]}ES 4 -1 16.427 0 0 1.5446 0 0 0 659.2934054010374 659.2934054010374 2.4472749489669354 0 0 0 0 0.5 0 0 0 {[QG]|[NA]}ES 1.5446 + + 4 + NaN NaN 80101.3 NaN 283 817 1101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1103 18.348 NaN 20040 35 0 4024.4 0.261 -1 DWCKHIRHT 9 20 626.801025390625 NaN 0 626.801025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _DWC(Carbamidomethyl (C))KHIRHT_ ENSG00000112320|ENST00000317357|SOBP 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77987.9 NaN 284 817 1101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1105 18.353 NaN 63511 35 0 19540 0.327 + 32884 WYYAQLQN 8 24 543.2558720606853 1084.4971911881705 2 543.255615234375 MULTI HCD FTMS 0 0 0 1104 27615.603515625 0.8109262811965003 1 -0.013256072998046875 1 Unmodified _WYYAQLQN_ APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;ENSG00000134982|ENST00000257430|APC;nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86663.5 NaN 285 818 1104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1106 18.358 NaN 37109 35 0 9087.2 0.261 -1 GRHLAVMPHP 10 19 565.8000466912309 NaN 0 565.7998657226562 PEAK HCD FTMS 0 0 0 1104 10044.40234375 0.8237841327253279 4 -0.038944244384765625 2 Oxidation (M) _GRHLAVM(Oxidation (M))PHP_ ENSG00000178921|ENST00000314666|PFAS;ENST00000546020.2_3_17:8172159-8172579:+|nuORF 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90002 NaN 286 818 1104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1107 18.361 NaN 16801 35 0 3191.2 0.261 + 28084 THGRYHRQGG 10 13 584.78940684825 NaN 0 584.790283203125 PEAK HCD FTMS 0 0 0 1104 11737.966796875 1 0 0 3 Unmodified _THGRYHRQGG_ REV__EML3-INTS5|1|fusion;REV__ENSG00000149499|ENST00000394773|EML3;REV__nc|ENSG00000149499|Q32P44-2|EML3 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80213.2 NaN 287 818 1104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1109 18.367 NaN 24253 35 0 4030.4 0.411 -1 SVFYAMII 8 27 480.24899411535245 958.4834352975049 2 480.7496032714844 MULTI HCD FTMS 0 0 0 1108 3611.7529296875 0.7641566721234011 -9 0.08091926574707031 1 Oxidation (M) _SVFYAM(Oxidation (M))II_ ENSG00000172365|ENST00000641342|OR5B2 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89011.2 NaN 288 819 1108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1112 18.382 NaN 15220 35 0 5386.1 0.327 + 12365 KNVSYKEDDD 10 14 606.7712760945817 NaN 0 606.7711791992188 PEAK HCD FTMS 0 0 0 1111 12617.240234375 0.6096768141254166 -60 0.48676490783691406 1 Unmodified _KNVSYKEDDD_ CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81182.3 NaN 289 821 1111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1113 18.387 NaN 69567 35 0 10442 0.261 -1 HPESERISM 9 29 551.2533782156111 1100.492203498022 2 551.2531127929688 MULTI HCD FTMS 0 0 0 1111 14044.0185546875 0.07827800627779696 -17 0.14318084716796875 2 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 2.9952420565917617 0.3283108881486655 1 HPE 3 -1 26.198 0 0 2.3806 0 0 0 734.3174532525999 734.3174532525999 26.197887582883936 0 0 0 0 0 0 0 0 HPE 2.3806 + + 3 + NaN NaN 85894.5 NaN 290 821 1111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1116 18.4 NaN 31568 35 0 4236.2 0.411 + 19601 NTNDVETAR 9 24 510.2413548628004 1018.4681567924008 2 510.240966796875 MULTI HCD FTMS 0 0 0 1115 9109.3857421875 0.3139120979856882 -10 0.09182548522949219 1 Unmodified _NTNDVETAR_ ENSG00000168036|ENST00000349496|CTNNB1 7.101721422024254 0.29718071671418667 1 {[QS]|[NT]}NDVE 6 3 23.645 0 0 2.3216 0 0 0 343.1715181940063 343.1715181940063 23.645162531850872 0 0 0 0 0 0 0 0 + {[QS]|[NT]}NDVE 2.3216 + + 13 + NaN NaN 91878.6 NaN 291 823 1115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1118 18.408 NaN 18902 35 0 3929.4 0.327 + 27942 TEQDSKDSTY 10 17 587.2487731095554 1172.4829932859107 2 587.2490234375 MULTI HCD FTMS 0 0 0 1117 11271.4853515625 0.5302921678950251 -6 0.054515838623046875 1 Unmodified _TEQDSKDSTY_ nc|ENSG00000211592|P01834|IGKC 1.1933415558491238 0.46898715808974617 1 N 1 10 6.9897 0 0 0.59615 0 0 585.696873756417 469.72409998111567 1055.4209737375327 0 0 0 0 0 0 0 0 0 N 0.59615 - 1 + NaN NaN 82431.4 NaN 292 824 1117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1119 18.412 NaN 72483 35 0 18583 0.264 + 34758 YQCDATEHSF 10 34 400.8257141113281 NaN 0 400.8257141113281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YQCDATEHSF_ REV__ENSG00000197081|ENST00000356956|IGF2R;REV__ENST00000475584.1_1_6:160517487-160533650:+|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86554.3 NaN 293 824 1117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1123 18.433 NaN 145820 35 0 53257 0.327 + 1905 DAAHPTNVQR 10 28 554.7783662901118 1107.5421796470234 2 554.7782592773438 MULTI HCD FTMS 0 0 0 1122 82448.53125 0.44916247853442126 10 -0.09259033203125 1 Unmodified _DAAHPTNVQR_ ENSG00000168036|ENST00000349496|CTNNB1 19.361941925380144 0.3300069447713393 1 DAAHP 5 5 25.713 0 0 2.3217 0 0 0 613.3066500299436 613.3066500299436 21.53212513775344 0 0 0 0 0.5 0 0 0 + DAAHP 2.3217 + + 12 + NaN NaN 101247.1 NaN 294 827 1122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1124 18.437 NaN 154300 35 0 25150 0.261 + 19515 NRNDDYTL 8 27 505.7305284629844 1009.4465039927688 2 505.7298583984375 MULTI HCD FTMS 0 0 0 1122 13914.123046875 0.040470259873836956 54 -0.47489356994628906 2 Unmodified _NRNDDYTL_ ENSG00000152208|ENST00000282020|GRID2;ENST00000505687.5_1_4:93225807-94138074:+|nuORF;ENST00000515744.5_1_4:93744106-94033158:+|nuORF;GRID2|p.N607Kfs*56|1|0.12|ENSG00000152208|chr4:93455934-93455935|-/A|frameshift_variant;GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant 0.6903765706972694 0.5409681170271811 1 {M(Oxidation (M))|F} 1 8 0.71334 0 0 0.070666 0 0 513.1249230374939 346.2647799127563 859.3897029502502 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.070666 - 1 + NaN NaN 101223.3 NaN 295 827 1122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1126 18.443 NaN 17809 35 0 3566.4 0.327 + 834 AVYWDELASEV 11 14 641.303466796875 NaN 0 641.303466796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _AVYWDELASEV_ ENSG00000085788|ENST00000397166|DDHD2;ENST00000519857.5_1_8:38089361-38095786:+|nuORF;ENST00000526370.1_1_8:38089361-38092027:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92009 NaN 296 828 1125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1127 18.447 NaN 32078 35 0 4617.4 0.264 + -1 SNCPGMLVD 9 25 476.1981977256181 NaN 0 476.19793701171875 PEAK HCD FTMS 0 0 0 1125 13095.1357421875 0.7571159846926083 -128 1.0463218688964844 2 Oxidation (M) _SNCPGM(Oxidation (M))LVD_ REV__ENST00000578883.1_1_17:29351359-29359472:+|nuORF 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91057.5 NaN 297 828 1125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1128 18.451 NaN 17003 35 0 3098.6 0.261 + -1 CYIFLNEIE 9 16 600.7840488739274 1199.5535448146547 2 600.7826538085938 MULTI HCD FTMS 0 0 0 1125 4571.5146484375 0.017373184608496548 71 -0.6125984191894531 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))YIFLNEIE_ REV__ENST00000477988.1_1_2:183791548-183791608:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99582.1 NaN 298 828 1125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1131 18.464 NaN 19654 35 0 2629.3 0.411 -1 FGVCCCQSRN 10 21 615.7439372825401 1229.47332163188 2 615.7432250976562 MULTI HCD FTMS 0 0 0 1130 9304.421875 0.5599491188718702 2 -0.021240234375 1 2 Carbamidomethyl (C) _FGVC(Carbamidomethyl (C))C(Carbamidomethyl (C))CQSRN_ ENST00000216044.9_1_22:39126956-39127310:+|nuORF 0.45834013312273997 0.47287763746706196 1 S 1 -1 11.99 0 0 0.97519 0 0 902.4164806668394 237.0012606256469 1139.4177412924864 0 0 0 0 0 0.5 0 0 0 S 0.97519 + + 4 + NaN NaN 107177.8 NaN 299 830 1130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1133 18.472 NaN 40626 35 0 3842.3 0.327 -1 NAESGRGQVM 10 28 532.7431594250739 1063.4717659169478 2 532.7432861328125 MULTI HCD FTMS 0 0 0 1132 14726.59375 0.04325310377648128 242 -2.1733474731445312 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 13.614867670302875 0.3837631382804675 1 HV{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.7921 0 0 662.3195667951187 0 662.3195667951187 0 15.427965835756437 0 0 0 0.3494850021680094 0 0 0 HV{M(Oxidation (M))|F} 2.7921 - 13 NaN NaN 85896.6 NaN 300 831 1132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1134 18.476 NaN 36586 35 0 6517.1 0.261 + 23036 RDFADWYL 8 20 543.2558720606853 1084.4971911881705 2 543.2552490234375 MULTI HCD FTMS 0 0 0 1132 8726.861328125 0.25626241336097755 14 -0.12235450744628906 2 Unmodified _RDFADWYL_ ENSG00000183856|ENST00000361170|IQGAP3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 85210 NaN 301 831 1132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1135 18.48 NaN 17323 35 0 2498.8 0.261 -1 VLEDCFTFLG 10 17 600.7840488739274 1199.5535448146547 2 600.7847290039062 MULTI HCD FTMS 0 0 0 1132 6390.3857421875 0.024285463299668898 74 -0.6327419281005859 3 Carbamidomethyl (C) _VLEDC(Carbamidomethyl (C))FTFLG_ ENSG00000164713|ENST00000297290|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENST00000473967.1_1_7:97912317-97920552:+|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93719.8 NaN 302 831 1132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1140 18.507 NaN 289860 35 0 43888 0.411 -1 HPESERISM 9 50 551.2533782156111 1100.492203498022 2 551.2532348632812 MULTI HCD FTMS 0 0 0 1139 138184.84375 0.7702093260869792 -3 0.022487640380859375 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 24.990960013464015 0.14443998892849796 1 HPE 3 -1 35.445 0 0 3.2209 0 0 0 734.3155171380605 734.3155171380605 15.243500300354142 0 0 0 0 0.5 0 0.4247425010840047 0 HPE 3.2209 + + 57 + NaN NaN 179433.9 NaN 303 835 1139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1142 18.515 NaN 28077 35 0 5603.7 0.327 -1 0 20 526.2453227246532 1050.4760925161063 2 526.2455444335938 MULTI HCD FTMS 0 0 0 1141 18944.5234375 0.18166515447537826 -17 0.14873886108398438 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86732.7 NaN 304 836 1141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1143 18.52 NaN 37908 35 0 8464.5 0.261 -1 LHPHTTRMH 9 33 573.2864426724733 NaN 0 573.285888671875 PEAK HCD FTMS 0 0 0 1141 5661.3603515625 0.9407954765736005 4 -0.03896141052246094 2 Oxidation (M) _LHPHTTRM(Oxidation (M))H_ ENST00000324685.10_1_16:30786705-30787371:+|nuORF 0.6014990680409731 0.29233206172879045 1 G 1 -1 4.7763 0 0 0.4173 0 0 571.7996787025653 512.7152193658811 1084.5148980684464 0 0 0 0 0 0.3807196863200844 0 0 0 G 0.4173 - 1 + NaN NaN 92529.1 NaN 305 836 1141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1145 18.525 NaN 51664 35 0 4389.5 0.411 + 19602 NTNDVETAR 9 36 510.2413548628004 1018.4681567924008 2 510.24114990234375 MULTI HCD FTMS 0 0 0 1144 22763.05859375 0.7844216593707766 4 -0.03699302673339844 1 Unmodified _NTNDVETAR_ ENSG00000168036|ENST00000349496|CTNNB1 14.957161354070239 0.23112978309247678 1 {[QS]|[NT]}NDVE 6 3 39.358 0 0 3.8645 0 0 0 343.1738680475219 343.1738680475219 22.368551809692562 0 0 0 0 1.0941876774005248 0 0 0 + {[QS]|[NT]}NDVE 3.8645 + + 22 + NaN NaN 93294.7 NaN 306 837 1144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1147 18.534 NaN 23309 35 0 3735.2 0.327 + -1 LVWAYACMC 9 22 587.2487731095554 1172.4829932859107 2 587.2488403320312 MULTI HCD FTMS 0 0 0 1146 11099.517578125 0.5222015604426887 8 -0.07381439208984375 1 2 Carbamidomethyl (C) _LVWAYAC(Carbamidomethyl (C))MC(Carbamidomethyl (C))_ REV__sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1 0.6014990680409731 0.3464572424761564 1 Y 1 -1 6.9897 0 0 0.59615 0 0 832.1621142349326 174.23635278873283 1006.3984670236654 0 0 0 0 0 0 0 0 0 Y 0.59615 + + 1 + NaN NaN 81920.2 NaN 307 838 1146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1148 18.538 NaN 28701 35 0 8132.7 0.261 + 8677 HFLHSTFML 9 16 566.7840685646535 NaN 0 566.783935546875 PEAK HCD FTMS 0 0 0 1146 6421.814453125 0.8687129346974298 -32 0.2785682678222656 2 Unmodified _HFLHSTFML_ REV__ENST00000489429.5_1_7:44268510-44268582:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82068.9 NaN 308 838 1146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1149 18.541 NaN 19275 35 0 2931.5 0.261 -1 RYHFIMAYH 9 18 627.2987513784354 NaN 0 627.29931640625 PEAK HCD FTMS 0 0 0 1146 3676.38818359375 0.8601072534779586 1 -0.013238906860351562 3 Oxidation (M) _RYHFIM(Oxidation (M))AYH_ ENSG00000092439|ENST00000646667|TRPM7 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78460.2 NaN 309 838 1146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1152 18.554 NaN 56918 35 0 14790 0.412 + 21952 QEHSPNQRL 9 31 554.7783662901118 1107.5421796470234 2 554.7781982421875 MULTI HCD FTMS 0 0 0 1151 22132.57421875 0.12057366870851059 23 -0.19730567932128906 1 Unmodified _QEHSPNQRL_ ENSG00000142556|ENST00000270649|ZNF614;nc|ENSG00000142556|Q8N883-2|ZNF614 9.38312468134398 0.279288223203164 1 DAAH 4 9 21.198 0 0 1.914 0 0 0 710.3597871263484 710.3597871263484 21.197887582883936 0 0 0 0 0.5 0 0 0 DAAH 1.914 - 3 + NaN NaN 90411.9 NaN 310 840 1151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1154 18.562 NaN 10887 35 0 2269.8 0.411 + 9492 HPYDSGIIYCL 11 16 640.8023721806541 NaN 0 640.8024291992188 PEAK HCD FTMS 0 0 0 1153 4020.006103515625 0.5468624418163784 -6 0.054935455322265625 1 Unmodified _HPYDSGIIYCL_ ENSG00000197299|ENST00000355112|BLM 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84895.4 NaN 311 841 1153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1156 18.57 NaN 32022 35 0 8729.9 0.411 + 33882 YLMRKWHP 8 19 565.8000991663339 NaN 0 565.800537109375 PEAK HCD FTMS 0 0 0 1155 7263.4443359375 0.5266493037361974 -54 0.4580249786376953 1 Unmodified _YLMRKWHP_ ENST00000557699.5_1_14:23818379-23821759:-|nuORF 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89196.6 NaN 312 842 1155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1158 18.579 NaN 32424 35 0 6106.6 0.411 -1 MPQKERESI 9 27 567.284641646723 1132.554730360246 2 567.2844848632812 MULTI HCD FTMS 0 0 0 1157 10601.6396484375 0.4223740767540244 -15 0.13576316833496094 1 Oxidation (M) _M(Oxidation (M))PQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86306.6 NaN 313 843 1157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1161 18.594 NaN 31106 35 0 5658.2 0.327 -1 NAESGRGQVM 10 18 532.7431594250739 1063.4717659169478 2 532.743408203125 MULTI HCD FTMS 0 0 0 1160 13143.7421875 0.03860415072883046 256 -2.3062992095947266 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 9.5439744041441 0.42184090036563754 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.0677 0 0 898.4256976569853 0 898.4256976569853 0 1.020599913279625 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0677 + + 4 + NaN NaN 93805.9 NaN 314 845 1160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1162 18.598 NaN 30274 35 0 5180.3 0.261 + -1 YSSRGLGVSC 10 16 543.2558720606853 1084.4971911881705 2 543.2559204101562 MULTI HCD FTMS 0 0 0 1160 6032.916015625 0.17715528637835265 28 -0.2446269989013672 2 Carbamidomethyl (C) _YSSRGLGVSC(Carbamidomethyl (C))_ REV__CON__Q92764;REV__ENSG00000197079|ENST00000246639|KRT35 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85034.2 NaN 315 845 1160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1163 18.602 NaN 12801 35 0 4149.1 0.261 -1 WFICTSCNC 9 11 624.2362290750131 NaN 0 624.2356567382812 PEAK HCD FTMS 0 0 0 1160 2006.6905517578125 0.3733895387387459 5 -0.04439735412597656 3 3 Carbamidomethyl (C) _WFIC(Carbamidomethyl (C))TSC(Carbamidomethyl (C))NC(Carbamidomethyl (C))_ ENSG00000125571|ENST00000263326|IL37;nc|ENSG00000125571|Q9NZH6-2|IL37;nc|ENSG00000125571|Q9NZH6-3|IL37;nc|ENSG00000125571|Q9NZH6-4|IL37;nc|ENSG00000125571|Q9NZH6-5|IL37 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88515.5 NaN 316 845 1160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1166 18.615 NaN 27151 35 0 5514.3 0.411 + -1 VCNRVLAHR 9 26 562.8070175017548 NaN 0 562.8067626953125 PEAK HCD FTMS 0 0 0 1165 4527.83984375 0.7979133993977756 1 -0.007965087890625 1 Carbamidomethyl (C) _VC(Carbamidomethyl (C))NRVLAHR_ REV__ENSG00000130772|ENST00000373842|MED18 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89355.9 NaN 317 847 1165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1169 18.63 NaN 223680 35 0 35689 0.411 -1 HPESERISM 9 43 551.2533782156111 1100.492203498022 2 551.2532348632812 MULTI HCD FTMS 0 0 0 1168 93399.546875 0.520586774230969 11 -0.08973312377929688 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 31.26834338654808 0.10542797264966089 1 HPES 4 -1 51.23 0 0 4.6552 0 0 0 647.2832125299436 647.2832125299436 39.31872208767466 0 0 0 0 0.8494850021680094 0 1.2302046884880937 0 HPES 4.6552 + + 46 + NaN NaN 147478.9 NaN 318 849 1168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1171 18.639 NaN 180390 35 0 17454 0.478 + 21808 QALRDNSTM 9 63 526.2453227246532 1050.4760925161063 2 526.2452392578125 MULTI HCD FTMS 0 0 0 1170 95318.1328125 0.914036364061345 -3 0.023500442504882812 1 Oxidation (M) _QALRDNSTM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000183199|Q58FF7|HSP90AB3P 103.82355648334675 0.003950725192926219 1 RDNST{M(Oxidation (M))|F} 6 3 69.65 0 0 6.6303 0 0 312.17988784004064 0 312.17988784004064 0 45.72228114217923 0 0 0 2.5994850021680094 0 1.1989700043360187 1.5 + RDNST{M(Oxidation (M))|F} 6.6303 + + 199 NaN NaN 123796.7 NaN 319 850 1170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1176 18.67 NaN 17041 35 0 3425.3 0.327 + 29689 VCPRCCCHRP 10 16 587.2485929137811 NaN 0 587.2491455078125 PEAK HCD FTMS 0 0 0 1175 4246.0078125 0.7036188393064198 1 -0.009914398193359375 1 Unmodified _VCPRCCCHRP_ ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105772.8 NaN 320 854 1175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1177 18.674 NaN 36316 35 0 8824.9 0.261 + 31852 VYMNAVWH 8 20 510.24134341207235 NaN 0 510.2414245605469 PEAK HCD FTMS 0 0 0 1175 1414.402099609375 0.25673949989474965 -4 0.03141975402832031 2 Unmodified _VYMNAVWH_ ENSG00000075240|ENST00000406902|GRAMD4 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83386.5 NaN 321 854 1175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1179 18.68 NaN 45796 35 0 8468 0.327 + 33032 YCKGYKTFV 9 21 554.7783662901118 1107.5421796470234 2 554.7781982421875 MULTI HCD FTMS 0 0 0 1178 15095.86328125 0.08223912863242196 38 -0.3257312774658203 1 Unmodified _YCKGYKTFV_ REV__ENSG00000108684|ENST00000225823|ASIC2;REV__nc|ENSG00000108684|Q16515|ASIC2 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86396.9 NaN 322 855 1178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1180 18.684 NaN 19756 35 0 4388.3 0.261 + 2201 DILDYYEASL 10 14 601.28564453125 NaN 0 601.28564453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DILDYYEASL_ nc|ENSG00000132535|P78352-2|DLG4 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87803.6 NaN 323 855 1178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1183 18.697 NaN 44311 35 0 6377.7 0.411 -1 MPQKERESI 9 34 567.284641646723 1132.554730360246 2 567.283935546875 MULTI HCD FTMS 0 0 0 1182 23613.302734375 0.9407645677727656 -1 0.007549285888671875 1 Oxidation (M) _M(Oxidation (M))PQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 2.9952420565917617 0.3283108881486655 1 WWKE 4 -1 12.703 0 0 1.1216 0 0 0 500.24863611392817 500.24863611392817 12.703037561203843 0 0 0 0 0 0 0 0 WWKE 1.1216 - 3 + NaN NaN 88691.2 NaN 324 857 1182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1187 18.72 NaN 26505 35 0 4700.7 0.327 + 31499 VYFTQNQW 8 16 543.2558720606853 1084.4971911881705 2 543.25537109375 MULTI HCD FTMS 0 0 0 1186 7743.333984375 0.22738134361100834 43 -0.3686542510986328 1 Unmodified _VYFTQNQW_ ENSG00000172888|ENST00000339296|ZNF621;ENST00000490457.5_1_3:40567331-40615968:+|nuORF;nc|ENSG00000172888|Q6ZSS3-2|ZNF621 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81517.4 NaN 325 860 1186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1188 18.725 NaN 19239 35 0 2996.2 0.261 -1 TDCDLCLRVA 10 22 583.2720999320968 NaN 0 583.2716064453125 PEAK HCD FTMS 0 0 0 1186 3738.566650390625 0.48557549431249064 -7 0.05770683288574219 2 Carbamidomethyl (C) _TDC(Carbamidomethyl (C))DLCLRVA_ ENSG00000163702|ENST00000403601|IL17RC;ENST00000451271.5_1_3:9958923-9975274:+|nuORF;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-3|IL17RC;nc|ENSG00000288550|Q8NAC3-4|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87689.4 NaN 326 860 1186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1190 18.73 NaN 34736 35 0 5919.9 0.327 -1 CSRRGCHSEWC 11 25 479.85520918483456 NaN 0 479.85491943359375 PEAK HCD FTMS 0 0 0 1189 1575.7366943359375 0.1649523218493175 -80 0.6767215728759766 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))SRRGC(Carbamidomethyl (C))HSEWC_ ENST00000379923.5_1_9:32384650-32405499:+|nuORF 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88114 NaN 327 861 1189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1191 18.735 NaN 18614 35 0 5273.7 0.261 + 34806 YRDIDRLCNN 10 12 641.3033031596135 NaN 0 641.3033447265625 PEAK HCD FTMS 0 0 0 1189 1965.003662109375 0.472691263170469 1 -0.01334381103515625 2 Unmodified _YRDIDRLCNN_ REV__ENST00000515753.1_1_10:69833717-69833930:-|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95131.6 NaN 328 861 1189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1192 18.738 NaN 29878 35 0 7631.1 0.263 + 26296 SRPRHPHH 8 15 512.2708568429872 NaN 0 512.2711181640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SRPRHPHH_ ENSG00000135426|ENST00000449076|TESPA1;nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99159.5 NaN 329 861 1189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1194 18.744 NaN 36762 35 0 4067.7 0.411 -1 NAESGRGQVM 10 37 532.7431594250739 1063.4717659169478 2 532.7423706054688 MULTI HCD FTMS 0 0 0 1193 23532.58203125 0.06911694788390663 273 -2.461343765258789 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 26.020703789607367 0.2677231329712098 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 -1 + 38.121 0 0 3.5846 3.5846 88.674 0 0 0 19.159277569321453 3.868865538569466 3.868865538569466 38.12137499549429 0 1.9247425010840047 0 0 0 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 3.5846 + + 39 + NaN NaN 107177.2 NaN 330 862 1193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1196 18.752 NaN 97540 35 0 10390 0.327 -1 HPESERISM 9 39 551.2533782156111 1100.492203498022 2 551.2531127929688 MULTI HCD FTMS 0 0 0 1195 31045.1875 0.17303846278451873 25 -0.21363067626953125 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3166204666012 734.3166204666012 25.713337517843655 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 8 + NaN NaN 92672 NaN 331 863 1195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1197 18.756 NaN 42534 35 0 8567.6 0.261 + -1 DNQACWTRG 9 20 554.2347110240169 1106.4548691148336 2 554.7354736328125 MULTI HCD FTMS 0 0 0 1195 3733.11181640625 0.6777158071398578 -1 0.008213043212890625 2 Carbamidomethyl (C) _DNQAC(Carbamidomethyl (C))WTRG_ REV__nc|ENSG00000112335|O60493-3|SNX3 1.844237919475145 0.33703635659052655 1 VP 2 -1 20.969 0 0 1.8952 0 0 0 907.3074434869749 907.3074434869749 20.969100130080562 0 0 0 0 0 0 0 0 VP 1.8952 - 2 + NaN NaN 88155.4 NaN 332 863 1195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1199 18.762 NaN 50691 35 0 6433.4 0.327 -1 QALRDNSTM 9 20 526.2453227246532 1050.4760925161063 2 526.2452392578125 MULTI HCD FTMS 0 0 0 1198 37390.26953125 0.3585473718924507 11 -0.09261703491210938 1 Oxidation (M) _QALRDNSTM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000183199|Q58FF7|HSP90AB3P 9.38312468134398 0.279288223203164 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 2.0217 0 0 885.4303294319251 0 885.4303294319251 0 21.237125054200234 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 2.0217 + + 2 + NaN NaN 83978 NaN 333 864 1198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1200 18.766 NaN 18629 35 0 4001.2 0.261 -1 HQSKYKCRM 9 14 627.298922637566 NaN 0 627.298828125 PEAK HCD FTMS 0 0 0 1198 4536.14794921875 1 0 0 2 Carbamidomethyl (C),Oxidation (M) _HQSKYKC(Carbamidomethyl (C))RM(Oxidation (M))_ ENSG00000231396|ENST00000417945|USP17L10 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102510.7 NaN 334 864 1198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1203 18.779 NaN 63946 35 0 9893.5 0.327 + 26433 STIGETSNR 9 29 482.73856016679855 963.4625674003971 2 482.7380676269531 MULTI HCD FTMS 0 0 0 1202 36052.12109375 0.5787910470768094 -5 0.049041748046875 1 Unmodified _STIGETSNR_ ENST00000556687.5_1_14:23375339-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-2|RBM23;nc|ENSG00000100461|Q86U06-4|RBM23 11.494710602746466 0.2610445893512368 1 {[MG]|[TS]}{I|L}G 4 5 21.198 0 0 2.2002 0 0 0 602.2548311822874 602.2548311822874 21.197887582883936 0 0 0 0 0.5 0 0 0 + {[MG]|[TS]}{I|L}G 2.2002 + + 5 + NaN NaN 84593.2 NaN 335 866 1202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1204 18.784 NaN 73759 35 0 15752 0.261 -1 0 24 485.3587643647568 484.3514878981568 1 485.3585510253906 MULTI HCD FTMS 0 0 0 1202 5772.44677734375 0.044549454009716945 68 -0.5755977630615234 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88241.9 NaN 336 866 1202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1206 18.789 NaN 20516 35 0 5275.1 0.411 + -1 FMMVWVAP 8 26 498.7356273004354 NaN 0 498.7355651855469 PEAK HCD FTMS 0 0 0 1205 6700.0576171875 1 0 0 1 Oxidation (M) _FM(Oxidation (M))MVWVAP_ REV__ENSG00000105464|ENST00000263269|GRIN2D;REV__ENSG00000161509|ENST00000293190|GRIN2C;REV__ENST00000584176.1_1_17:72843434-72846906:-|nuORF 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87811.9 NaN 337 867 1205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1209 18.805 NaN 36017 35 0 5645 0.411 -1 HADEKEALM 9 31 530.2424345315317 1058.4703161298632 2 530.2421264648438 MULTI HCD FTMS 0 0 0 1208 15814.828125 0.6937569608596522 -10 0.09181785583496094 1 Oxidation (M) _HADEKEALM(Oxidation (M))_ ENSG00000182578|ENST00000675795|CSF1R 2.9952420565917617 0.3283108881486655 1 HA 2 -1 16.454 0 0 1.5545 0 0 0 847.3502291315061 847.3502291315061 9.463950151760656 0 0 0 0 0 0 0 0 HA 1.5545 + + 2 + NaN NaN 109870.1 NaN 338 869 1208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1211 18.813 NaN 30214 35 0 4519.2 0.411 + 33033 YCKGYKTFV 9 25 554.7785011364062 1107.5424493396124 2 554.7786254882812 MULTI HCD FTMS 0 0 0 1210 11690.818359375 0.8835996050320768 6 -0.04961395263671875 1 Unmodified _YCKGYKTFV_ REV__ENSG00000108684|ENST00000225823|ASIC2;REV__nc|ENSG00000108684|Q16515|ASIC2 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87284.1 NaN 339 870 1210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1213 18.821 NaN 195730 35 0 30502 0.327 + 25254 SASTSSHNL 9 40 452.21171616856003 902.4088794039201 2 452.2115173339844 MULTI HCD FTMS 0 0 0 1212 112172.9765625 0.9173810567847419 2 -0.017995834350585938 1 Unmodified _SASTSSHNL_ ENSG00000015479|ENST00000394805|MATR3 20.41453444215458 0.18397929046831515 1 {[SA]|[TG]}STS 5 4 45.317 0 0 5.0218 0 0 0 466.20639978580317 466.20639978580317 39.83288122256525 0 0 0 0 0.8807196863200843 1.3979400086720375 0.3807196863200844 0 + {[SA]|[TG]}STS 5.0218 + + 26 + NaN NaN 118719.2 NaN 340 871 1212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1214 18.825 NaN 31720 35 0 5480.7 0.261 + -1 QMPTQQKKE 9 17 567.284641646723 1132.554730360246 2 567.2847290039062 MULTI HCD FTMS 0 0 0 1212 8960.365234375 0.3569849682455286 13 -0.11109161376953125 2 Oxidation (M) _QM(Oxidation (M))PTQQKKE_ REV__chrX:118885223-118892112|319|11.03|0.2|5.77|+|0|LINC01285,LINC01285|1 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88171.8 NaN 341 871 1212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1216 18.831 NaN 24480 35 0 5962.5 0.411 + 21292 PRVPWRWQ 8 18 562.8071080423656 NaN 0 562.8074340820312 PEAK HCD FTMS 0 0 0 1215 5089.6416015625 0.931071530464059 -23 0.2001628875732422 1 Unmodified _PRVPWRWQ_ ENST00000595335.5_1_19:57874916-57879933:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87597.2 NaN 342 872 1215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1218 18.839 NaN 29808 35 0 5432.7 0.411 + 22134 QIQMLHDSN 9 23 543.2558720606853 1084.4971911881705 2 543.2556762695312 MULTI HCD FTMS 0 0 0 1217 8240.0302734375 0.24196672373299838 56 -0.47209739685058594 1 Unmodified _QIQMLHDSN_ REV__ENSG00000064102|ENST00000261191|INTS13;REV__nc|ENSG00000064102|Q9NVM9-2|INTS13 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88444.4 NaN 343 873 1217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1221 18.854 NaN 12164 35 0 2613.4 0.411 + 1773 CLPWFWWML 9 18 641.3031005859375 NaN 0 641.3031005859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _CLPWFWWML_ REV__ENSG00000163297|ENST00000403729|ANTXR2;REV__nc|ENSG00000163297|P58335-2|ANTXR2;REV__nc|ENSG00000163297|P58335|ANTXR2 0.6014990680409731 0.29233206172879045 1 P 1 -1 3.4949 0 0 0.27312 0 0 638.8606733380874 540.6587618463499 1179.5194351844373 0 0 0 0 0 0 0 0 0 P 0.27312 + + 1 + NaN NaN 96132.4 NaN 344 875 1220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1223 18.862 NaN 418700 35 0 41264 0.327 + 25969 SPDHSDHTL 9 58 504.7228038369187 1007.4310547406374 2 504.7225036621094 MULTI HCD FTMS 0 0 0 1222 142528.6875 0.43255267284137777 -9 0.07318496704101562 1 Unmodified _SPDHSDHTL_ ENSG00000136205|ENST00000311160|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 96.28474662873226 0.004361282420133734 1 [PS]DHVHCT 8 4 51.8 0 0 5.1418 0 0 0 128.0722540063363 128.0722540063363 20.385409676892934 0 0 0 0 1.7302046884880937 1.5228787452803376 1.1747425010840047 0 [PS]DHVHCT 5.1418 - 128 NaN NaN 137868.4 NaN 345 876 1222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1224 18.867 NaN 35774 35 0 9360.5 0.261 -1 SLCYYLVM 8 19 532.7431594250739 1063.4717659169478 2 532.7431640625 MULTI HCD FTMS 0 0 0 1222 13315.275390625 0.03910795653496794 287 -2.5916194915771484 2 Carbamidomethyl (C),Oxidation (M) _SLC(Carbamidomethyl (C))YYLVM(Oxidation (M))_ ENST00000342374.4_1_20:43128193-43128265:-|nuORF 5.760428011301431 0.5334459684533844 1 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.4419 0 0 799.3573077644072 0 799.3573077644072 0 25.969100130080562 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.4419 + + 4 + NaN NaN 74113.6 NaN 346 876 1222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1226 18.872 NaN 59997 35 0 9594.6 0.327 -1 HPESERISM 9 26 551.2533782156111 1100.492203498022 2 551.2530517578125 MULTI HCD FTMS 0 0 0 1225 18015.419921875 0.10041364928779524 39 -0.3253631591796875 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 2.9952420565917617 0.3283108881486655 1 HPE 3 -1 26.198 0 0 2.3806 0 0 0 734.3157442682249 734.3157442682249 26.197887582883936 0 0 0 0 0 0 0 0 HPE 2.3806 + + 4 + NaN NaN 94455.3 NaN 347 877 1225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1227 18.877 NaN 23328 35 0 4465.7 0.261 + -1 NKKNCCWR 8 20 583.2720999320968 NaN 0 583.2718505859375 PEAK HCD FTMS 0 0 0 1225 4174.658203125 0.5422162850450487 10 -0.08512306213378906 2 2 Carbamidomethyl (C) _NKKNC(Carbamidomethyl (C))C(Carbamidomethyl (C))WR_ REV__ENSG00000243772|ENST00000342376|KIR2DL3;REV__nc|ENSG00000243772|P43628-2|KIR2DL3 0.7936320650641473 0.38822285293237185 1 D 1 -1 4.6041 0 0 0.39536 0 0 466.74950884681226 579.7271212213499 1046.4766300681622 0 0 0 0 0 0 0 0 0 D 0.39536 - 1 + NaN NaN 76705.7 NaN 348 877 1225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1229 18.882 NaN 33933 35 0 4615.1 0.327 -1 0 22 526.2453227246532 1050.4760925161063 2 526.2446899414062 MULTI HCD FTMS 0 0 0 1228 19568.2265625 0.18764604520212083 25 -0.2066974639892578 1 NaN NaN 1 E 1 -1 5.401 0 0 0.51415 0 0 539.2355662483313 379.17243372135005 918.4079999696814 0 0 0 0 0 0 0 0.3807196863200844 0 E 0.51415 - 3 + NaN NaN 81371.4 NaN 349 878 1228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1230 18.887 NaN 19848 35 0 4621.5 0.261 + -1 PMLCRLHWP 9 17 584.7895084273538 NaN 0 584.788818359375 PEAK HCD FTMS 0 0 0 1228 7120.96630859375 0.7308797405671276 -21 0.18488311767578125 2 Oxidation (M) _PM(Oxidation (M))LCRLHWP_ REV__ENST00000349792.9_1_1:151171521-151199832:+|nuORF;REV__ENST00000409426.5_2_1:151171521-151199832:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89210.1 NaN 350 878 1228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1233 18.9 NaN 14209 35 0 2902.3 0.411 + -1 VAPYEAALCIM 11 19 627.298828125 NaN 0 627.298828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _VAPYEAALC(Carbamidomethyl (C))IM(Oxidation (M))_ REV__ENSG00000136940|ENST00000259467|PDCL;REV__nc|ENSG00000136940|Q13371-2|PDCL 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91313.8 NaN 351 880 1232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1235 18.908 NaN 15120 35 0 4255.7 0.411 + 31851 VYMLPQIMMI 10 11 619.8205017385267 NaN 0 619.8201293945312 PEAK HCD FTMS 0 0 0 1234 10457.009765625 0.8567039663282967 1 -0.007991790771484375 1 Unmodified _VYMLPQIMMI_ REV__ENST00000495085.1_1_9:114659495-114685228:+|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89536.9 NaN 352 881 1234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1237 18.916 NaN 15471 35 0 4205.6 0.411 + 7979 GERGCIFCRK 10 18 584.7895084273538 NaN 0 584.79052734375 PEAK HCD FTMS 0 0 0 1236 7868.041015625 0.807557784584877 -17 0.14409637451171875 1 Unmodified _GERGCIFCRK_ REV__ENSG00000083223|ENST00000375963|TUT7;REV__nc|ENSG00000083223|Q5VYS8-4|TUT7;REV__nc|ENSG00000083223|Q5VYS8-6|TUT7 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84639.9 NaN 353 882 1236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1239 18.924 NaN 26481 35 0 5093 0.411 + 31021 VSMAVHRIGR 10 20 563.3192138671875 NaN 0 563.3192138671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VSMAVHRIGR_ ENSG00000107938|ENST00000356792|EDRF1;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;nc|ENSG00000107938|Q3B7T1-5|EDRF1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90480.9 NaN 354 883 1238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1241 18.932 NaN 46487 35 0 6773.4 0.327 -1 HADEKEALM 9 25 530.2424345315317 1058.4703161298632 2 530.2426147460938 MULTI HCD FTMS 0 0 0 1240 14029.541015625 0.6154408799340548 5 -0.04162406921386719 1 Oxidation (M) _HADEKEALM(Oxidation (M))_ ENSG00000182578|ENST00000675795|CSF1R 4.897010918128616 0.31389406404703984 1 HAD 3 -1 23.188 0 0 2.1907 0 0 0 732.3278292291624 732.3278292291624 16.197887582883936 0 0 0 0 0 0 0 0 HAD 2.1907 + + 5 + NaN NaN 98242.1 NaN 355 884 1240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1242 18.936 NaN 39184 35 0 8919.1 0.261 + 7084 FRCLYHRN 8 24 554.7785011364062 1107.5424493396124 2 554.7789916992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FRCLYHRN_ REV__ENST00000377403.6_1_1:9330292-9330553:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85692.2 NaN 356 884 1240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1244 18.942 NaN 43764 35 0 5657 0.411 -1 RYDGSTTAM 9 32 509.2188544158398 1016.4231558984796 2 509.21832275390625 MULTI HCD FTMS 0 0 0 1243 10149.044921875 0.21571587021656063 -12 0.10309410095214844 1 Oxidation (M) _RYDGSTTAM(Oxidation (M))_ ENSG00000186153|ENST00000566780|WWOX;ENST00000561846.5_1_16:78133657-78314740:+|nuORF;ENST00000562214.5_1_16:78133657-78152856:+|nuORF;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;nc|ENSG00000186153|Q9NZC7-2|WWOX;nc|ENSG00000186153|Q9NZC7-3|WWOX;nc|ENSG00000186153|Q9NZC7-5|WWOX;nc|ENSG00000186153|Q9NZC7-6|WWOX;nc|ENSG00000186153|Q9NZC7-7|WWOX 13.042465956692817 0.2476723265019929 1 TA{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.9792 0 0 679.2935562634744 0 679.2935562634744 0 37.346368802282015 0 0 0 1 0 0.4247425010840047 0 TA{M(Oxidation (M))|F} 3.9792 + + 7 NaN NaN 91599.9 NaN 357 885 1243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1247 18.957 NaN 22319 35 0 5851.6 0.411 + 2472 DRKYNGIE 8 30 497.7513433615805 993.488133789961 2 497.7512512207031 MULTI HCD FTMS 0 0 0 1246 1375.5029296875 0.11225571491862962 -13 0.11061859130859375 1 Unmodified _DRKYNGIE_ tr|U7SSE4|U7SSE4_FUSNUUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murEPE=3SV=1 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91245.8 NaN 358 887 1246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1249 18.965 NaN 28873 35 0 5510.3 0.411 + 20820 PHSDPYWAI 9 24 543.2558720606853 1084.4971911881705 2 543.255615234375 MULTI HCD FTMS 0 0 0 1248 6705.49072265625 0.19690529856588582 70 -0.6023883819580078 1 Unmodified _PHSDPYWAI_ ENSG00000139160|ENST00000357721|ETFBKMT 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89893 NaN 359 888 1248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1251 18.973 NaN 12441 35 0 2395.6 0.411 -1 TGNEEQACNHQ 11 25 644.2543129759913 NaN 0 644.2540283203125 PEAK HCD FTMS 0 0 0 1250 7098.57373046875 1 0 0 1 Carbamidomethyl (C) _TGNEEQAC(Carbamidomethyl (C))NHQ_ ENSG00000164031|ENST00000442697|DNAJB14;ENST00000567680.1_1_15:66064063-66064450:-|nuORF;nc|ENSG00000164031|Q8TBM8-2|DNAJB14 0 0.34212014346876374 1 S 1 -1 11.99 0 0 0.93197 0 0 297.0555487041325 899.3972872369749 1196.4528359411074 0 0 0 0 0 0.5 0 0 0 S 0.93197 - 1 + NaN NaN 88340.5 NaN 360 889 1250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1253 18.981 NaN 594150 35 0 65106 0.411 + 25970 SPDHSDHTL 9 84 504.7228038369187 1007.4310547406374 2 504.7226867675781 MULTI HCD FTMS 0 0 0 1252 262786.6875 0.7975172301032862 5 -0.04160118103027344 1 Unmodified _SPDHSDHTL_ ENSG00000136205|ENST00000311160|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 149.9946105101851 8.83195450578534E-06 1 [PS]DHSDHT{I|L} 9 0 + 71.389 0 0 7.0863 7.0863 88.47 0 0 0 7.754537344402905 15.343881671710392 7.754537344402905 7.754537344402905 0 1.579689690656103 1.5228787452803376 1.5114393726401687 0 + + [PS]DHSDHT{I|L};[DP]SHSDHT{I|L};[{I|L}T]HDSHDPS;[HT]{I|L}DSHDPS;[PS]DHS[HS]E{I|L};[PS]DHVH{[ET]|[MV]}S;[DP]SHS[HS]E{I|L};[DP]SHVH{[ET]|[MV]}S;[HD][{I|L}T]SHDPS;[HD][PS]SDHT{I|L} 7.0863;6.3165;5.5632;4.5361;4.349;4.1861;3.5792;3.4164;3.2405;3.0981 +;-;-;-;-;-;-;-;-;- + 627 NaN NaN 271627 NaN 361 890 1252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1255 18.99 NaN 28848 35 0 9407.9 0.411 + 30885 VQQRYYEPS 9 24 585.2830418266859 1168.5515307201717 2 585.2830810546875 MULTI HCD FTMS 0 0 0 1254 10757.083984375 1 0 0 1 Unmodified _VQQRYYEPS_ REV__nc|ENSG00000107164|Q96I24-2|FUBP3 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91792.7 NaN 362 891 1254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1257 18.998 NaN 56577 35 0 8282.9 0.411 -1 HPESERISM 9 40 551.2533782156111 1100.492203498022 2 551.2528076171875 MULTI HCD FTMS 0 0 0 1256 9125.2255859375 0.05086182867964912 54 -0.46925926208496094 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3171480768186 734.3171480768186 19.20818753952375 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 7 + NaN NaN 108592.5 NaN 363 892 1256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1260 19.013 NaN 30294 35 0 4152.5 0.327 -1 0 25 526.2453227246532 1050.4760925161063 2 526.2444458007812 MULTI HCD FTMS 0 0 0 1259 16626.79296875 0.1594396883649822 41 -0.34920692443847656 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83365.5 NaN 364 894 1259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1261 19.018 NaN 29261 35 0 5601.2 0.261 + 14634 LFYYRDEK 8 22 567.284641646723 1132.554730360246 2 567.2837524414062 MULTI HCD FTMS 0 0 0 1259 4242.7255859375 0.1690320895358051 36 -0.307586669921875 2 Unmodified _LFYYRDEK_ ENSG00000052126|ENST00000429027|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87493 NaN 365 894 1259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1265 19.038 NaN 38520 35 0 6290.2 0.327 + 16266 LQGYKNRN 8 29 496.76712110613533 NaN 0 496.76715087890625 PEAK HCD FTMS 0 0 0 1264 12747.873046875 1 0 0 1 Unmodified _LQGYKNRN_ ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2 0.6903765706972694 0.38822285293237185 1 W 1 8 3.0989 0 0 0.31254 0 0 291.5844608628582 510.82386194400624 802.4083228068644 0 0 0 0 0 0 0 0 0 W 0.31254 - 1 + NaN NaN 90509.9 NaN 366 897 1264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1266 19.042 NaN 23136 35 0 8145.3 0.261 + 8750 HHQNVLFHH 9 14 584.7895084273538 NaN 0 584.7902221679688 PEAK HCD FTMS 0 0 0 1264 8433.4287109375 0.8655878881076461 -2 0.01491546630859375 2 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82223.8 NaN 367 897 1264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1269 19.055 NaN 32580 35 0 5102.7 0.411 + 34036 YMVPLFEDV 9 27 556.7702512203538 1111.5259495075074 2 556.7703247070312 MULTI HCD FTMS 0 0 0 1268 6524.875 0.11480097758643915 -16 0.1316089630126953 1 Unmodified _YMVPLFEDV_ REV__ENSG00000198756|ENST00000361927|COLGALT2;REV__ENST00000486375.1_1_1:183899365-183909857:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90313 NaN 368 899 1268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1271 19.063 NaN 73557 35 0 9739.6 0.327 -1 RYDGSTTAM 9 34 509.2188544158398 1016.4231558984796 2 509.2186279296875 MULTI HCD FTMS 0 0 0 1270 36434.484375 0.774407499754449 3 -0.025506973266601562 1 Oxidation (M) _RYDGSTTAM(Oxidation (M))_ ENSG00000186153|ENST00000566780|WWOX;ENST00000561846.5_1_16:78133657-78314740:+|nuORF;ENST00000562214.5_1_16:78133657-78152856:+|nuORF;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;nc|ENSG00000186153|Q9NZC7-2|WWOX;nc|ENSG00000186153|Q9NZC7-3|WWOX;nc|ENSG00000186153|Q9NZC7-5|WWOX;nc|ENSG00000186153|Q9NZC7-6|WWOX;nc|ENSG00000186153|Q9NZC7-7|WWOX 13.042465956692817 0.2476723265019929 1 TA{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.9792 0 0 679.2935313950484 0 679.2935313950484 0 40.44531259372398 0 0 0 1 0 0.4247425010840047 0 TA{M(Oxidation (M))|F} 3.9792 + + 7 NaN NaN 98622.8 NaN 369 900 1270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1272 19.068 NaN 42389 35 0 10379 0.261 -1 NAESGRGQVM 10 24 532.7428957659591 NaN 0 532.7426147460938 PEAK HCD FTMS 0 0 0 1270 17678.388671875 0.8130737163145184 -6 0.05024528503417969 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 11.494710602746466 0.33034640988000663 1 ES 2 -1 9.464 0 0 0.88991 0 0 185.0794061785994 659.2973116510374 844.3767178296368 0 0 0 0 0 0 0 0 0 ES 0.88991 + + 4 + NaN NaN 90395.4 NaN 370 900 1270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1275 19.081 NaN 38321 35 0 5697.9 0.411 + -1 LMSLFYYM 8 32 563.253364644999 1124.492176356798 2 563.2527465820312 MULTI HCD FTMS 0 0 0 1274 4668.787109375 0.46385531648016093 -9 0.0753631591796875 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LMSLFYYM(Oxidation (M))_ REV__ENSG00000167359|ENST00000380211|OR51I1;REV__ENSG00000176900|ENST00000322049|OR51T1;REV__ENSG00000176925|ENST00000322110|OR51F2;REV__ENSG00000181718|ENST00000641661|OR5T2;REV__ENSG00000187918|ENST00000641930|OR51I2;REV__ENSG00000197674|ENST00000641159|OR51C1P;REV__ENSG00000205496|ENST00000380371|OR51A2;REV__ENSG00000205497|ENST00000641898|OR51A4;REV__nc|ENSG00000176925|Q8NH61|OR51F2;REV__nc|ENSG00000181718|Q8NGG2|OR5T2;REV__OR51I2|p.S67Y|1|0.06|ENSG00000187918|chr11:5453688-5453688|C/A|missense_variant;REV__OR51T1|p.H58Y|1|0.05|ENSG00000176900|chr11:4882071-4882071|C/T|missense_variant 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93814.8 NaN 371 902 1274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1277 19.089 NaN 44018 35 0 5426.8 0.411 + 2203 DILYAMYV 8 30 494.2461983487666 986.4778437643332 2 494.24627685546875 MULTI HCD FTMS 0 0 0 1276 8352.8837890625 0.20934426966168934 -11 0.09136962890625 1 Unmodified _DILYAMYV_ ENSG00000171488|ENST00000370454|LRRC8C 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102180 NaN 372 903 1276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1280 19.104 NaN 10002 35 0 2394.1 0.411 -1 ICMTRTDMDE 10 16 644.2543129759913 NaN 0 644.2542114257812 PEAK HCD FTMS 0 0 0 1279 4110.29736328125 0.5790314391803646 15 -0.1316394805908203 1 Carbamidomethyl (C),Oxidation (M) _IC(Carbamidomethyl (C))MTRTDM(Oxidation (M))DE_ ENST00000322244.9_1_4:68484337-68484529:-|nuORF 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85876.4 NaN 373 905 1279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1282 19.113 NaN 27824 35 0 4688.7 0.327 + 8498 HADVKPDNV 9 23 497.7513433615805 993.488133789961 2 497.7510986328125 MULTI HCD FTMS 0 0 0 1281 9642.0107421875 0.7868909514887531 6 -0.04905509948730469 1 Unmodified _HADVKPDNV_ ENSG00000231274|ENST00000612221|SBK3 1.6526216038709556 0.33848895094777925 1 A 1 8 5.4846 0 0 0.55205 0 0 639.8255188991392 279.60614954166255 919.4316684408018 0 0 0 0 0 0 0 0 0 + A 0.55205 + + 1 + NaN NaN 79362.9 NaN 374 906 1281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1283 19.117 NaN 28926 35 0 12518 0.261 -1 VYIYIYMF 8 9 585.2830068725227 1168.5514608118453 2 585.2828979492188 MULTI HCD FTMS 0 0 0 1281 8894.1630859375 0.6919532038539165 3 -0.025491714477539062 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VYIYIYM(Oxidation (M))F_ ENST00000372067.7_1_6:43753877-43754102:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80806 NaN 375 906 1281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1285 19.122 NaN 52121 35 0 8292.6 0.411 -1 HPESERISM 9 34 551.2533782156111 1100.492203498022 2 551.2537841796875 MULTI HCD FTMS 0 0 0 1284 8401.08984375 0.046825668947147854 69 -0.5922927856445312 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 30.005 0 0 2.7265 0 0 0 734.3156832330686 734.3156832330686 30.00508444608478 0 0 0 0 0.3807196863200844 0 0 0 HPE 2.7265 + + 4 + NaN NaN 97293.4 NaN 376 907 1284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1288 19.138 NaN 30593 35 0 4077.2 0.411 -1 0 35 526.2454290828891 1050.4763052325782 2 526.2454833984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 P 1 -1 5.4846 0 0 0.5221 0 0 524.6809083593345 425.71320520572505 950.3941135650596 0 0 0 0 0 0 0 0 0 P 0.5221 - 1 + NaN NaN 82863.4 NaN 377 909 1287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1290 19.146 NaN 7961.6 35 0 2198.3 0.411 -1 PFSCDWLDC 9 11 600.2299963853147 NaN 0 600.3233032226562 PEAK HCD FTMS 0 0 0 1289 1760.468505859375 0.4396505344547669 7 -0.06511116027832031 1 2 Carbamidomethyl (C) _PFSC(Carbamidomethyl (C))DWLDC(Carbamidomethyl (C))_ ENSG00000266265|ENST00000583337|KLF14 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96341.5 NaN 378 910 1289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1295 19.176 NaN 124550 35 0 31934 0.411 + 21740 QAEEREHTL 9 46 556.7702512203538 1111.5259495075074 2 556.770263671875 MULTI HCD FTMS 0 0 0 1294 55070.27734375 0.9689260982040011 -1 0.0074138641357421875 1 Unmodified _QAEEREHTL_ ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP 11.494710602746466 0.2610445893512368 1 [QA]EE 4 5 16.198 0 0 1.4573 0 0 0 651.3189180963499 651.3189180963499 6.73393743112328 0 0 0 0 0 0 0 0 + [QA]EE 1.4573 + + 33 + NaN NaN 115177.9 NaN 379 914 1294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1297 19.184 NaN 46306 35 0 4704.4 0.327 -1 SYSTERQM 8 37 509.2188544158398 1016.4231558984796 2 509.2183532714844 MULTI HCD FTMS 0 0 0 1296 10505.2236328125 0.2232863757344632 18 -0.1624431610107422 1 Oxidation (M) _SYSTERQM(Oxidation (M))_ ENSG00000173681|ENST00000379682|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;nc|ENSG00000173681|A2AJT9-3|BCLAF3 7.289230182591677 0.5311777711368266 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95753.7 NaN 380 915 1296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1298 19.189 NaN 22912 35 0 6591.6 0.261 -1 RMIRMAKEC 9 8 585.2830068725227 1168.5514608118453 2 585.2832641601562 MULTI HCD FTMS 0 0 0 1296 7842.47802734375 0.610133606134843 12 -0.11034965515136719 2 2 Oxidation (M) _RM(Oxidation (M))IRM(Oxidation (M))AKEC_ ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97336 NaN 381 915 1296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1299 19.192 NaN 39333 35 0 11258 0.261 + 23339 RKKEVELW 8 21 544.3143581484754 NaN 0 544.3143310546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RKKEVELW_ REV__ENSG00000182329|ENST00000498697|KIAA2012;REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012;REV__nc|ENSG00000182329|Q0VF49|KIAA2012 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98102.1 NaN 382 915 1296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1301 19.198 NaN 28511 35 0 3827.4 0.327 -1 SLCYYLVM 8 15 532.7428957659591 NaN 0 532.7424926757812 PEAK HCD FTMS 0 0 0 1300 20053.67578125 0.9223191658393403 10 -0.08716583251953125 1 Carbamidomethyl (C),Oxidation (M) _SLC(Carbamidomethyl (C))YYLVM(Oxidation (M))_ ENST00000342374.4_1_20:43128193-43128265:-|nuORF 5.230669730166228 0.38822285293237185 1 V 1 -1 11.237 0 0 1.0566 0 0 165.04687444031816 796.3375948541624 961.3844692944806 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.0566 + + 1 + NaN NaN 91155.6 NaN 383 916 1300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1302 19.202 NaN 25872 35 0 4683.3 0.261 + 15188 LMWPFWCC 8 16 543.2238982561245 NaN 0 543.2555541992188 PEAK HCD FTMS 0 0 0 1300 1938.109130859375 1 0 0 2 Unmodified _LMWPFWCC_ REV__ENSG00000105270|ENST00000360535|CLIP3 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84358 NaN 384 916 1300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1303 19.206 NaN 21414 35 0 3527 0.261 -1 0 20 629.3495074997022 1256.6844620662043 2 629.3494873046875 MULTI HCD FTMS 0 0 0 1300 5802.685546875 0.03336136190422462 -17 0.1422290802001953 3 NaN NaN 1 {I|L} 1 -1 3.9794 0 0 0.31666 0 0 550.8348049390544 589.7441500299436 1140.578954968998 0 0 0 0 0 0 0 0 0 {I|L} 0.31666 - 1 + NaN NaN 84556.2 NaN 385 916 1300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1305 19.211 NaN 74591 35 0 13782 0.327 + 2204 DILYAMYV 8 25 494.2461983487666 986.4778437643332 2 494.2462158203125 MULTI HCD FTMS 0 0 0 1304 32846.11328125 0.8232061848019738 3 -0.025028228759765625 1 Unmodified _DILYAMYV_ ENSG00000171488|ENST00000370454|LRRC8C 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89987.9 NaN 386 917 1304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1308 19.226 NaN 27017 35 0 5779.6 0.327 + -1 TATECRMMGE 10 16 580.7227864892033 1159.4310200452064 2 580.7230834960938 MULTI HCD FTMS 0 0 0 1307 10206.185546875 0.8182931067813008 2 -0.017477035522460938 1 2 Oxidation (M) _TATECRM(Oxidation (M))M(Oxidation (M))GE_ REV__ENSG00000162849|ENST00000407071|KIF26B;REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100500.7 NaN 387 919 1307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1309 19.231 NaN 36864 35 0 7460.4 0.261 + -1 MMIYCVRH 8 12 563.253364644999 1124.492176356798 2 563.2534790039062 MULTI HCD FTMS 0 0 0 1307 4617.20068359375 0.45873008003303467 8 -0.06844520568847656 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))MIYC(Carbamidomethyl (C))VRH_ REV__OR8D2|p.S142Y|1|0.39|ENSG00000279116|chr11:124319773-124319773|G/T|missense_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84469.1 NaN 388 919 1307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1312 19.244 NaN 43224 35 0 8409.6 0.327 + -1 VHLCTDQQT 9 26 551.2533782156111 1100.492203498022 2 551.2539672851562 MULTI HCD FTMS 0 0 0 1311 8662.4248046875 0.04828228762314964 83 -0.7196388244628906 1 Carbamidomethyl (C) _VHLC(Carbamidomethyl (C))TDQQT_ REV__ENSG00000158169|ENST00000289081|FANCC 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87525.1 NaN 389 921 1311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1313 19.248 NaN 15651 35 0 4086.2 0.261 + 6470 FPILVVAEWE 10 14 601.8279788009693 NaN 0 601.8281860351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FPILVVAEWE_ REV__ENSG00000114127|ENST00000392981|XRN1;REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF;REV__nc|ENSG00000114127|Q8IZH2|XRN1 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103601 NaN 390 921 1311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1316 19.261 NaN 630750 35 0 56200 0.411 + 3976 ERAQEQLDRI 10 95 419.8883918229109 NaN 0 419.90167236328125 PEAK HCD FTMS 0 0 0 1315 17434.90625 0.5852073396232377 152 -1.3988533020019531 1 Unmodified _ERAQEQLDRI_ ENST00000406170.1_1_6:111751926-111752229:+|nuORF 10.898955630103616 0.3308562935670533 1 EEK 3 8 14.838 0 0 1.7711 0 0 65.31821323390928 383.24127584680105 448.5594890807103 0 0 0 0 0 0 0 0.8807196863200843 0 EEK 1.7711 - 44 + NaN NaN 266970.7 NaN 391 923 1315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1318 19.269 NaN 49075 35 0 5981.3 0.411 + -1 DSNARQLTM 9 38 526.2454290828891 1050.4763052325782 2 526.2452392578125 MULTI HCD FTMS 0 0 0 1317 21428.03125 0.5724792762868499 -13 0.11511039733886719 1 Oxidation (M) _DSNARQLTM(Oxidation (M))_ REV__ENSG00000138411|ENST00000644978|HECW2 7.289230182591677 0.29575926068275815 1 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}]T{M(Oxidation (M))|F} 8 -1 31.036 0 0 2.9544 0 0 53.04714212678591 0 53.04714212678591 0 29.045905011531996 0 0 0 0 0 0 0.7134679910804405 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}]T{M(Oxidation (M))|F} 2.9544 - 19 + NaN NaN 90473.7 NaN 392 924 1317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1321 19.285 NaN 35099 35 0 6192.4 0.327 + 21080 PMWYGVRS 8 22 498.2399567891557 NaN 0 498.248779296875 PEAK HCD FTMS 0 0 0 1320 1914.137939453125 1 0 0 1 Unmodified _PMWYGVRS_ REV__ENST00000594954.5_1_19:35820289-35820811:+|nuORF 1.844237919475145 0.38822285293237185 1 W 1 -1 6.9897 0 0 0.70286 0 0 228.08616250233644 577.2839674430664 805.3701299454028 0 0 0 0 0 0 0 0 0 W 0.70286 + + 2 + NaN NaN 101087.9 NaN 393 926 1320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1322 19.289 NaN 36343 35 0 9310.3 0.261 + 12352 KNIIKMMNP 9 17 544.8011964883068 1087.5878400434135 2 544.8012084960938 MULTI HCD FTMS 0 0 0 1320 12860.427734375 0.6285885876024105 -9 0.07368087768554688 2 Unmodified _KNIIKMMNP_ tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1 1.844237919475145 0.33703635659052655 1 {[QN]|[E{I|L}]|[KN]}{I|L} 3 6 10.458 0 0 0.96154 0 0 0 729.3524874322874 729.3524874322874 10.45757490560675 0 0 0 0 0 0 0 0 + {[QN]|[E{I|L}]|[KN]}{I|L} 0.96154 + + 1 + NaN NaN 96772 NaN 394 926 1320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1324 19.295 NaN 42839 35 0 9740.4 0.411 + 29703 VDDDRKHDI 9 25 556.7702512203538 1111.5259495075074 2 556.77001953125 MULTI HCD FTMS 0 0 0 1323 12646.9423828125 0.2225148143108098 12 -0.11166763305664062 1 Unmodified _VDDDRKHDI_ CUL3|p.E702D|1|0.28|ENSG00000036257|chr2:224478269-224478269|C/G|missense_variant 6.723162845929126 0.3000504726104499 1 N 1 9 1.5938 0 0 0.14339 0 0 612.3058394994981 382.1519869440063 994.4578264435045 0 0 0 0 0 0 0 0 0 N 0.14339 - 1 + NaN NaN 100870.2 NaN 395 927 1323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1326 19.303 NaN 8324.1 35 0 3833.6 0.411 + 2496 DSCPIGDQVYR 11 9 626.7864951831993 NaN 0 626.8034057617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _DSCPIGDQVYR_ REV__ENSG00000139985|ENST00000603540|ADAM21;REV__ENST00000529267.2_1_14:70712472-70713909:-|nuORF 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84242.5 NaN 396 928 1325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1328 19.311 NaN 12515 35 0 5386.6 0.327 + 28085 THGRYHRQGG 10 9 584.789411273338 NaN 0 584.790283203125 PEAK HCD FTMS 0 0 0 1327 6138.7060546875 0.5597316544207869 -36 0.30526161193847656 1 Unmodified _THGRYHRQGG_ REV__EML3-INTS5|1|fusion;REV__ENSG00000149499|ENST00000394773|EML3;REV__nc|ENSG00000149499|Q32P44-2|EML3 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99774.4 NaN 397 929 1327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1329 19.315 NaN 13285 35 0 3839 0.261 + -1 LLLLYWPGMTG 11 14 640.3405138380143 NaN 0 640.3403930664062 PEAK HCD FTMS 0 0 0 1327 2233.302978515625 0.5057506998046684 2 -0.019861221313476562 2 Oxidation (M) _LLLLYWPGM(Oxidation (M))TG_ REV__ENSG00000010282|ENST00000441594|HHATL 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80964.2 NaN 398 929 1327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1331 19.321 NaN 36140 35 0 5364.2 0.327 -1 NAESGRGQVM 10 21 532.7428957659591 NaN 0 532.7430419921875 PEAK HCD FTMS 0 0 0 1330 13508.1591796875 0.6212743360637801 24 -0.2165050506591797 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.897010918128616 0.3359931263921593 1 S 1 -1 6.9897 0 0 0.65725 0 0 314.12145940125566 659.2924288385374 973.4138882397931 0 0 0 0 0 0 0 0 0 S 0.65725 + + 1 + NaN NaN 108774.3 NaN 399 930 1330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1332 19.325 NaN 40116 35 0 10386 0.261 + -1 MMMVVMLM 8 24 509.2188544158398 1016.4231558984796 2 509.2182312011719 MULTI HCD FTMS 0 0 0 1330 5034.171875 0.10700029167224674 33 -0.28793907165527344 2 2 Oxidation (M) _M(Oxidation (M))MMVVMLM(Oxidation (M))_ REV__ENST00000540319.5_1_12:67692794-67696138:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84640.8 NaN 400 930 1330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1334 19.331 NaN 11744 35 0 3259.3 0.411 -1 YSCIWHHHL 9 17 626.7864951831993 NaN 0 626.7861938476562 PEAK HCD FTMS 0 0 0 1333 1364.00146484375 0.3142321379056665 1 -0.008054733276367188 1 Carbamidomethyl (C) _YSC(Carbamidomethyl (C))IWHHHL_ ENST00000585057.5_3_3:127783873-127787552:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89974.8 NaN 401 931 1333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1336 19.339 NaN 251680 35 0 28163 0.411 -1 0 73 629.3495074997022 1256.6844620662043 2 629.3490600585938 MULTI HCD FTMS 0 0 0 1335 167922.515625 0.9654363949896315 -1 0.008054733276367188 1 NaN NaN 1 RKE{M(Oxidation (M))|F}RE 6 -1 48.607 0 0 3.8679 0 0 230.1642185967201 178.06202112369377 408.2262397204139 0 0 0 0 0 1.305462187404089 0 1.25 1.0356668758921828 RKE{M(Oxidation (M))|F}RE 3.8679 - 412 + NaN NaN 178547.9 NaN 402 932 1335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1338 19.347 NaN 31499 35 0 6150.6 0.411 + 4197 EVAGTVTGQKR 11 30 573.3174632434328 1144.6203735536656 2 573.31689453125 MULTI HCD FTMS 0 0 0 1337 5764.58251953125 0.42175528368314963 -7 0.06199836730957031 1 Unmodified _EVAGTVTGQKR_ ENSG00000165819|ENST00000298717|METTL3;ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF 3.876331618118854 0.4019203928379901 1 {NN|[MP]|[D{I|L}]|[EV]}[QT]VT 6 6 7.9048 0 0 0.69061 0 0 0 484.2657869928344 484.2657869928344 7.904849854573685 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}[QT]VT 0.69061 - 6 + NaN NaN 105595.6 NaN 403 933 1337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1342 19.37 NaN 56192 35 0 7966.6 0.327 -1 0 30 442.7753150364946 883.5360771397892 2 442.7749328613281 MULTI HCD FTMS 0 0 0 1341 40096.4453125 0.07499509320743265 -13 0.10857772827148438 1 NaN NaN 1 R 1 -1 20.485 0 0 2.3185 0 0 709.4244266044361 0 709.4244266044361 0 7.720340221751378 0 0 0 0.5 0 0 0 R 2.3185 - 6 + NaN NaN 90820.4 NaN 404 936 1341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1343 19.374 NaN 93560 35 0 9631.3 0.261 + 5626 FMCKKDFHPAS 11 38 437.53860284771923 1309.5939791433577 3 437.5390319824219 MULTI HCD FTMS 0 0 0 1341 27481.826171875 0.6525654712987405 4 -0.04420661926269531 2 Unmodified _FMCKKDFHPAS_ CIR1|p.K314Mfs*21|1|0.12|ENSG00000138433|chr2:174348894-174348909|TGAAGCTTTCTCTTCT/-|frameshift_variant;ENSG00000138433|ENST00000342016|CIR1;ENST00000461454.1_1_2:175243642-175260410:-|nuORF;ENST00000472169.1_1_2:175252411-175260410:-|nuORF;nc|ENSG00000138433|Q86X95-2|CIR1 1.0135738785822086 0.41447547578978133 1 AS 2 9 20.969 0 0 1.6012 0 0 1133.5016906679984 0 1133.5016906679984 0 18.979400086720375 0 0 0 0 0 0 0 + AS 1.6012 + + 2 NaN NaN 91984.7 NaN 405 936 1341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1345 19.38 NaN 1153000 35 0 114370 0.327 + 21762 QAEREEKRVL 10 99 419.9016822028542 1256.6832172087627 3 419.90185546875 MULTI HCD FTMS 0 0 0 1344 707520.3125 0.9003944919073403 3 -0.03428459167480469 1 Unmodified _QAEREEKRVL_ ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB;nc|ENSG00000125835|P14678|SNRPB 97.74103586103693 0.00040826645800522306 1 QAEREEKRV{I|L} 10 0 + 64.92 0 0 5.166 5.166 91.747 0 0 0 43.95088291203106 12.82516055786094 12.82516055786094 64.91998304211162 0 1.6307196863200843 0 0.8494850021680094 0 + + QAEREEKRV{I|L} 5.166 + + 841 + NaN NaN 256447.2 NaN 406 937 1344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1346 19.384 NaN 30708 35 0 4780 0.261 + -1 HFCARCAS 8 21 476.1981977256181 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 1344 10887.8125 0.6294961002602762 -19 0.16097640991210938 2 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.26034 0 0 345.54726107448 454.7745760553344 800.3218371298144 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.26034 + + 1 + NaN NaN 78654.2 NaN 407 937 1344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1347 19.388 NaN 35757 35 0 5717.4 0.261 + -1 AHQRCQPY 8 20 530.2425744972295 1058.470596061259 2 530.2429809570312 MULTI HCD FTMS 0 0 0 1344 6945.2119140625 0.5324056474743828 -8 0.06883430480957031 3 Carbamidomethyl (C) _AHQRC(Carbamidomethyl (C))QPY_ REV__ENSG00000163625|ENST00000295888|WDFY3;REV__ENST00000426414.6_1_4:85730999-85781744:-|nuORF;REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89880.3 NaN 408 937 1344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1348 19.391 NaN 53132 35 0 11038 0.261 -1 0 26 551.2533201502873 1100.4920873673746 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1344 8459.07421875 0.14457846528134083 -48 0.40621185302734375 4 NaN NaN 1 N 1 -1 5.4846 0 0 0.49837 0 0 618.7764024081933 364.6417635553344 983.4181659635278 0 0 0 0 0 0 0 0 0 N 0.49837 - 1 + NaN NaN 84447.5 NaN 409 937 1344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1350 19.396 NaN 55548 35 0 5033.2 0.327 -1 QALRDNSTM 9 34 526.2454290828891 1050.4763052325782 2 526.2451782226562 MULTI HCD FTMS 0 0 0 1349 20015.927734375 0.5347529919989681 1 -0.010110855102539062 1 Oxidation (M) _QALRDNSTM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000183199|Q58FF7|HSP90AB3P 13.042465956692817 0.2476723265019929 1 T{M(Oxidation (M))|F} 2 -1 21.766 0 0 2.072 0 0 784.3830262792563 0 784.3830262792563 0 14.318722087674656 0 0 0 0.3807196863200844 0 0 0 T{M(Oxidation (M))|F} 2.072 + + 8 + NaN NaN 90043.2 NaN 410 938 1349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1351 19.401 NaN 32340 35 0 11130 0.261 + 28754 TTEGSKFVRG 10 17 541.2856084182897 1080.5566639033793 2 541.7871704101562 MULTI HCD FTMS 0 0 0 1349 10959.94921875 0.5972861052997955 -5 0.04946327209472656 2 Unmodified _TTEGSKFVRG_ REV__ENSG00000159459|ENST00000290650|UBR1;REV__nc|ENSG00000159459|Q8IWV7-2|UBR1;REV__UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant 1.1933415558491238 0.46898715808974617 1 K[PS] 3 -1 10.458 0 0 0.9678 0 0 750.3669900370921 0 750.3669900370921 0 10.45757490560675 0 0 0 0 0 0 0 K[PS] 0.9678 - 1 NaN NaN 86946 NaN 411 938 1349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1354 19.414 NaN 50121 35 0 8272.7 0.327 -1 RPEPEGEAM 9 20 516.2269298906948 1030.4393068481895 2 516.2271728515625 MULTI HCD FTMS 0 0 0 1353 32710.52734375 0.8795477173223811 -5 0.05158424377441406 1 Oxidation (M) _RPEPEGEAM(Oxidation (M))_ ENSG00000124422|ENST00000261497|USP22 20.41453444215458 0.18397929046831515 1 E[EP]WA{M(Oxidation (M))|F} 6 -1 39.654 0 0 3.8482 0 0 253.15435988593907 0 253.15435988593907 0 39.65350013324773 0 0 0 1.4247425010840047 0 0 0 E[EP]WA{M(Oxidation (M))|F} 3.8482 - 20 NaN NaN 93892.1 NaN 412 940 1353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1355 19.418 NaN 39197 35 0 11710 0.261 + 18397 MPRHIMPN 8 27 498.2491731820287 994.4837934308574 2 498.2496643066406 MULTI HCD FTMS 0 0 0 1353 7348.1435546875 0.43033201424691114 10 -0.08395767211914062 2 Unmodified _MPRHIMPN_ REV__ENSG00000132466|ENST00000358602|ANKRD17;REV__nc|ENSG00000132466|O75179-2|ANKRD17;REV__nc|ENSG00000132466|O75179-4|ANKRD17;REV__nc|ENSG00000132466|O75179-6|ANKRD17;REV__nc|ENSG00000132466|O75179-7|ANKRD17 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87258.5 NaN 413 940 1353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1358 19.431 NaN 22810 35 0 5763.2 0.411 + 23003 RAKAWETVK 9 18 544.8153804891838 NaN 0 544.8014526367188 PEAK HCD FTMS 0 0 0 1357 3729.80810546875 1 0 0 1 Unmodified _RAKAWETVK_ ENST00000378097.5_1_1:6160202-6160340:+|nuORF 1.4819007175156935 0.28806575819904134 1 {I|L}A 2 8 10.969 0 0 1.0085 0 0 242.15623467097106 658.3172091119749 900.4734437829459 0 0 0 0 0 0 0 0 0 {I|L}A 1.0085 - 3 + NaN NaN 87384.1 NaN 414 942 1357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1360 19.439 NaN 37425 35 0 6029 0.327 -1 NAESGRGQVM 10 22 532.7428957659591 NaN 0 532.742919921875 PEAK HCD FTMS 0 0 0 1359 20568.92578125 0.9460168138607095 37 -0.31271934509277344 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 12.872603262515298 0.32916712473430193 1 ES 2 -1 14.776 0 0 1.3894 0 0 185.08019963563066 659.2955416315061 844.3757412671368 0 0 0 0 0 0.3807196863200844 0 0 0 ES 1.3894 + + 6 + NaN NaN 92022.9 NaN 415 943 1359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1361 19.444 NaN 21382 35 0 4075.6 0.261 + 8751 HHQNVLFHH 9 24 584.789411273338 NaN 0 584.7898559570312 PEAK HCD FTMS 0 0 0 1359 7677.52197265625 0.7000420019012605 -22 0.19566917419433594 2 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85839.9 NaN 416 943 1359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1364 19.457 NaN 80708 35 0 13027 0.327 -1 0 38 629.3495074997022 1256.6844620662043 2 629.34912109375 MULTI HCD FTMS 0 0 0 1363 58944.9296875 0.3388919002827576 12 -0.10285186767578125 1 NaN NaN 1 EK 2 -1 12.474 0 0 0.99263 0 0 613.2804836499919 383.23835169010005 996.518835340092 0 0 0 0 0 0.5 0 0 0 EK 0.99263 - 8 + NaN NaN 99718.3 NaN 417 945 1363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1365 19.461 NaN 32358 35 0 9364.1 0.261 + 34489 YPFLCLLDE 9 10 556.7702512203538 1111.5259495075074 2 556.77001953125 MULTI HCD FTMS 0 0 0 1363 1483.53662109375 0.02610187235569191 30 -0.24979782104492188 2 Unmodified _YPFLCLLDE_ ENSG00000099821|ENST00000588649|POLRMT;ENST00000578759.1_1_17:60214444-60217453:-|nuORF 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84406.4 NaN 418 945 1363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1368 19.474 NaN 30605 35 0 5347.1 0.411 -1 RAIEQESQM 9 29 554.2587093138342 1106.5028656944683 2 554.2586669921875 MULTI HCD FTMS 0 0 0 1367 7709.609375 0.7329628955313592 -1 0.00759124755859375 1 Oxidation (M) _RAIEQESQM(Oxidation (M))_ ENSG00000064933|ENST00000441310|PMS1;nc|ENSG00000064933|P54277-3|PMS1 5.296884461304476 0.3108627248283497 1 E{[QS]|[NT]}{M(Oxidation (M))|F} 4 -1 12.307 0 0 1.1123 0 0 597.3255482404312 0 597.3255482404312 0 12.307131330965717 0 0 0 0 0 0 0 E{[QS]|[NT]}{M(Oxidation (M))|F} 1.1123 + + 2 NaN NaN 99366.4 NaN 419 947 1367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1371 19.49 NaN 509820 35 0 33512 0.411 -1 0 84 442.7753150364946 883.5360771397892 2 442.7752380371094 MULTI HCD FTMS 0 0 0 1370 534654.25 1 0 0 1 NaN NaN 1 AVAAVAAR 8 -1 100.58 0 0 11.384 0 0 0 171.0888613336547 171.0888613336547 73.66979607492942 0 0 0 0 2.974907363720609 1.6989700043360187 0 2.1549471895720984 AVAAVAAR 11.384 - 1460 + NaN NaN 230967.3 NaN 420 949 1370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1375 19.514 NaN 67022 35 0 8838.3 0.327 -1 HPESERISM 9 20 551.2533201502873 1100.4920873673746 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1374 24808.0625 0.4240075816929755 -33 0.287841796875 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 2.9952420565917617 0.3283108881486655 1 HPE 3 -1 26.198 0 0 2.3806 0 0 0 734.3153780572874 734.3153780572874 26.197887582883936 0 0 0 0 0 0 0 0 HPE 2.3806 + + 3 + NaN NaN 96758.9 NaN 421 952 1374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1376 19.518 NaN 34764 35 0 11544 0.261 + 31075 VTEDLPQLGD 10 20 543.7693364377635 NaN 0 543.768798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VTEDLPQLGD_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-4|TNC 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86244.2 NaN 422 952 1374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1378 19.524 NaN 42654 35 0 5716.8 0.327 + 1853 CVKRIFMGQ 9 22 541.2856084182897 1080.5566639033793 2 541.2854614257812 MULTI HCD FTMS 0 0 0 1377 21160.640625 0.6720396768502269 4 -0.03574180603027344 1 Unmodified _CVKRIFMGQ_ REV__ENSG00000103657|ENST00000443617|HERC1;REV__ENST00000559886.1_1_15:64045105-64067822:-|nuORF;REV__HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F}SK[PS] 5 -1 19.833 0 0 1.8354 0 0 516.2645130841812 0 516.2645130841812 0 19.83288122256525 0 0 0 0 0 0 0 {M(Oxidation (M))|F}SK[PS] 1.8354 - 6 NaN NaN 87324.9 NaN 423 953 1377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1379 19.528 NaN 52310 35 0 5921.2 0.261 -1 FPFCAVYM 8 26 525.7252563272626 1049.4359597213252 2 526.245361328125 MULTI HCD FTMS 0 0 0 1377 4546.6259765625 1 0 0 2 Carbamidomethyl (C),Oxidation (M) _FPFC(Carbamidomethyl (C))AVYM(Oxidation (M))_ ENSG00000176787|ENST00000321522|OR52E2;OR52E2|p.A40T|1|0.19|ENSG00000176787|chr11:5059510-5059510|C/T|missense_variant 2.8892196856762586 0.5377058178582064 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.7113 0 0 783.3424366273783 0 783.3424366273783 0 10.969100130080562 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.7113 - 9 + NaN NaN 86924.9 NaN 424 953 1377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1380 19.532 NaN 43701 35 0 11356 0.261 + -1 PVPGMEERE 9 26 530.2425744972295 1058.470596061259 2 530.2422485351562 MULTI HCD FTMS 0 0 0 1377 6586.4638671875 0.5049047607426298 8 -0.06927299499511719 3 Oxidation (M) _PVPGM(Oxidation (M))EERE_ REV__CX3CL1|p.L260Q|1|0.33|ENSG00000006210|chr16:57382617-57382617|T/A|missense_variant;REV__ENSG00000006210|ENST00000006053|CX3CL1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100205.7 NaN 425 953 1377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1385 19.56 NaN 87301 35 0 7697.7 0.411 + 17672 MAEGKQHAL 9 41 492.75024312259256 983.4859333119851 2 492.75006103515625 MULTI HCD FTMS 0 0 0 1384 37323.49609375 0.6577371696088842 -4 0.03574180603027344 1 Unmodified _MAEGKQHAL_ ENSG00000232119|ENST00000371317|MCTS1;ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1 39.94969957227396 0.06557568441294001 1 MAE 3 6 49.909 0 0 5.0747 0 0 0 649.3439951007914 649.3439951007914 12.971062485323515 0 0 0 0 0.8494850021680094 2 0.4247425010840047 0 + MAE 5.0747 + + 22 + NaN NaN 120085.5 NaN 426 957 1384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1387 19.568 NaN 35594 35 0 5453 0.327 -1 NAESGRGQVM 10 22 532.7428957659591 NaN 0 532.7432250976562 PEAK HCD FTMS 0 0 0 1386 12231.5546875 0.5625600732430945 52 -0.4506206512451172 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.5288652416199255 0.33630820806755984 1 ES 2 -1 9.464 0 0 0.88991 0 0 185.07995549500566 659.2941378229124 844.3740933179181 0 0 0 0 0 0 0 0 0 ES 0.88991 + + 3 + NaN NaN 87158.6 NaN 427 958 1386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1388 19.572 NaN 21602 35 0 4714.9 0.261 -1 KRCERYWA 8 17 584.789411273338 NaN 0 584.7902221679688 PEAK HCD FTMS 0 0 0 1386 5386.54052734375 0.49114865805839913 -7 0.0623016357421875 2 Carbamidomethyl (C) _KRC(Carbamidomethyl (C))ERYWA_ ENSG00000072135|ENST00000175756|PTPN18;nc|ENSG00000072135|Q99952-2|PTPN18 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83577.6 NaN 428 958 1386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1390 19.578 NaN 30132 35 0 3273.5 0.411 + -1 QRRRRRCGI 9 30 629.3649580708361 NaN 0 629.3490600585938 PEAK HCD FTMS 0 0 0 1389 2207.7548828125 0.6837480095390902 -3 0.025339126586914062 1 Carbamidomethyl (C) _QRRRRRC(Carbamidomethyl (C))GI_ REV__ENST00000273258.3_1_3:69134136-69134307:+|nuORF 0.5247636613948944 0.2927039108006614 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.31665 0 0 645.3961015891347 461.2505282037719 1106.6466297929067 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.31665 - 2 + NaN NaN 96187 NaN 429 959 1389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1394 19.601 NaN 28017 35 0 4845.1 0.411 + 25629 SGQERYWT 8 27 513.7357152210518 1025.4568775089035 2 513.736328125 MULTI HCD FTMS 0 0 0 1393 6076.4404296875 0.703148024763458 -1 0.007373809814453125 1 Unmodified _SGQERYWT_ ENST00000471919.1_1_6:116981518-116989864:-|nuORF 0.6903765706972694 0.5409681170271811 1 M 1 8 2.7642 0 0 0.26956 0 0 511.73411247159726 379.6677645318969 891.4018770034942 0 0 0 0 0 0 0 0 0 M 0.26956 - 1 + NaN NaN 92133 NaN 430 962 1393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1396 19.609 NaN 140510 35 0 9970.7 0.411 -1 0 60 442.7753150364946 883.5360771397892 2 442.775146484375 MULTI HCD FTMS 0 0 0 1395 120764.7265625 0.22587443485673217 14 -0.11359405517578125 1 NaN NaN 1 AVAAVAAR 8 -1 90.373 0 0 10.229 0 0 0 171.08881555728752 171.08881555728752 75.33610242200095 0 0 0 0 2.579689690656103 1.5228787452803376 0 2.0356668758921828 AVAAVAAR 10.229 - 287 + NaN NaN 135217.9 NaN 431 963 1395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1398 19.617 NaN 22425 35 0 6292.4 0.327 + 9675 HVKYVWKM 8 16 545.796145371552 1089.577737809904 2 545.7960205078125 MULTI HCD FTMS 0 0 0 1397 4995.94677734375 0.4830091619601156 -1 0.0080108642578125 1 Unmodified _HVKYVWKM_ ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82344.6 NaN 432 964 1397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1399 19.621 NaN 20110 35 0 6565.3 0.261 -1 VYIYIYMF 8 11 585.2829444134932 NaN 0 585.2828979492188 PEAK HCD FTMS 0 0 0 1397 5358.1982421875 0.454487734999315 -6 0.04894447326660156 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VYIYIYM(Oxidation (M))F_ ENST00000372067.7_1_6:43753877-43754102:+|nuORF 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85130.5 NaN 433 964 1397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1402 19.634 NaN 111370 35 0 13052 0.411 -1 HPESERISM 9 43 551.2533201502873 1100.4920873673746 2 551.2531127929688 MULTI HCD FTMS 0 0 0 1401 32376.58984375 0.5533652441867957 -19 0.15979385375976562 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 9.38312468134398 0.279288223203164 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3153337094591 734.3153337094591 25.713337517843655 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 9 + NaN NaN 113230.1 NaN 434 966 1401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1404 19.642 NaN 26940 35 0 4149.4 0.411 + 23100 RESPPPSALQ 10 27 541.2856084182897 1080.5566639033793 2 541.2857055664062 MULTI HCD FTMS 0 0 0 1403 6460.3642578125 0.205174369958616 18 -0.15337562561035156 1 Unmodified _RESPPPSALQ_ ENSG00000176182|ENST00000322217|MYPOP 1.1933415558491238 0.46898715808974617 1 S 1 9 6.9897 0 0 0.64686 0 0 330.1903825455632 660.3097017877561 990.5000843333194 0 0 0 0 0 0 0 0 0 + S 0.64686 + + 5 + NaN NaN 101650.7 NaN 435 967 1403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1406 19.65 NaN 44034 35 0 5384.2 0.411 + -1 DSNARQLTM 9 33 526.2454290828891 1050.4763052325782 2 526.2451782226562 MULTI HCD FTMS 0 0 0 1405 18067.673828125 0.4827027138721323 31 -0.25982666015625 1 Oxidation (M) _DSNARQLTM(Oxidation (M))_ REV__ENSG00000138411|ENST00000644978|HECW2 10.823927491677226 0.26684000660059787 1 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WR]{M(Oxidation (M))|F} 7 -1 24.269 0 0 2.3103 0 0 53.04679482290357 0 53.04679482290357 0 21.17046012758685 0 0 0 0.4247425010840047 0 0 0.6421590589602533 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WR]{M(Oxidation (M))|F} 2.3103 - 10 + NaN NaN 91237.7 NaN 436 968 1405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1409 19.666 NaN 36387 35 0 5738.7 0.411 + -1 KGNMMKFGM 9 27 530.2425744972295 1058.470596061259 2 530.2423706054688 MULTI HCD FTMS 0 0 0 1408 5601.06201171875 0.4293658831137078 24 -0.2025279998779297 1 Oxidation (M) _KGNMMKFGM(Oxidation (M))_ REV__ZNF518A|p.D451N|1|0.23|ENSG00000177853|chr10:96157673-96157673|G/A|missense_variant 1.844237919475145 0.33703635659052655 1 C 1 -1 3.0989 0 0 0.29278 0 0 426.7187172544214 525.7112520807249 952.4299693351463 0 0 0 0 0 0.2614393726401688 0 0 0 C 0.29278 - 1 + NaN NaN 102427.9 NaN 437 970 1408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1413 19.689 NaN 27977 35 0 5180.8 0.411 + 3980 EREEHLAKI 9 23 562.8072625371416 NaN 0 562.8076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _EREEHLAKI_ ENSG00000228486|ENST00000627399|C2orf92;ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89062.1 NaN 438 973 1412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1415 19.697 NaN 19167 35 0 2907.2 0.327 -1 0 18 629.3495074997022 1256.6844620662043 2 629.3494262695312 MULTI HCD FTMS 0 0 0 1414 9520.7177734375 0.05473743298026661 41 -0.3695964813232422 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79967.7 NaN 439 974 1414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1416 19.701 NaN 35077 35 0 9957.7 0.261 -1 0 17 541.2856084182897 1080.5566639033793 2 541.2853393554688 MULTI HCD FTMS 0 0 0 1414 5060.603515625 0.16071944189108156 25 -0.21331024169921875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83882.1 NaN 440 974 1414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1418 19.707 NaN 47257 35 0 5262.9 0.411 + 35001 YSWHDEIHWCF 11 34 508.21163813352297 NaN 0 508.2120666503906 PEAK HCD FTMS 0 0 0 1417 7592.00390625 0.3403955381115262 -258 2.173755645751953 1 Unmodified _YSWHDEIHWCF_ REV__ENSG00000012817|ENST00000317961|KDM5D;REV__ENSG00000073614|ENST00000399788|KDM5A;REV__ENSG00000117139|ENST00000367265|KDM5B;REV__ENSG00000126012|ENST00000375401|KDM5C;REV__ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;REV__ENST00000497100.5_1_X:53227940-53240837:-|nuORF;REV__ENST00000544777.1_1_12:442481-443474:-|nuORF;REV__KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;REV__nc|ENSG00000012817|Q9BY66-2|KDM5D;REV__nc|ENSG00000012817|Q9BY66-3|KDM5D;REV__nc|ENSG00000073614|P29375-2|KDM5A;REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B;REV__nc|ENSG00000126012|P41229-2|KDM5C;REV__nc|ENSG00000126012|P41229-3|KDM5C;REV__nc|ENSG00000126012|P41229-4|KDM5C;REV__nc|ENSG00000126012|P41229-5|KDM5C 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99673.6 NaN 441 975 1417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1421 19.722 NaN 68101 35 0 15351 0.326 + 3911 EPRDGSPEA 9 28 479.21732964930527 956.4201063654106 2 479.2171325683594 MULTI HCD FTMS 0 0 0 1420 28611.083984375 0.5424274935362857 -6 0.0484619140625 1 Unmodified _EPRDGSPEA_ ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ 5.731851221503515 0.3075653528928475 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98456.2 NaN 442 977 1420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1422 19.727 NaN 44355 35 0 10036 0.261 -1 NAESGRGQVM 10 25 532.7428957659591 NaN 0 532.7429809570312 PEAK HCD FTMS 0 0 0 1420 12004.8515625 0.552133424312295 71 -0.6898097991943359 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.897010918128616 0.3359931263921593 1 E 1 -1 5.4846 0 0 0.51572 0 0 185.0751337176619 746.3251436822874 931.4002773999493 0 0 0 0 0 0 0 0 0 E 0.51572 + + 1 + NaN NaN 83677.7 NaN 443 977 1420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1424 19.732 NaN 77065 35 0 6897.2 0.327 -1 0 43 442.7753150364946 883.5360771397892 2 442.77508544921875 MULTI HCD FTMS 0 0 0 1423 45035.2734375 0.08423251744000913 29 -0.2599830627441406 1 NaN NaN 1 R 1 -1 18.979 0 0 2.1481 0 0 709.424396086858 0 709.424396086858 0 7.781512503836437 0 0 0 0.5 0 0 0 R 2.1481 - 20 + NaN NaN 98767 NaN 444 978 1423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1425 19.737 NaN 19186 35 0 4788.2 0.261 + 8752 HHQNVLFHH 9 17 584.789411273338 NaN 0 584.791015625 PEAK HCD FTMS 0 0 0 1423 6627.080078125 0.6042619508186854 13 -0.11206436157226562 2 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82457.9 NaN 445 978 1423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1427 19.742 NaN 25499 35 0 4186.5 0.327 + 4149 ETNFIEDIE 9 20 555.2556169055404 NaN 0 555.2553100585938 PEAK HCD FTMS 0 0 0 1426 5287.74951171875 0.6987901063609432 2 -0.019855499267578125 1 Unmodified _ETNFIEDIE_ REV__ENSG00000172139|ENST00000305815|SLC9C1;REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92359.4 NaN 446 979 1426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1428 19.747 NaN 31084 35 0 12113 0.261 -1 CEYLGKYFCQC 11 19 509.87399582675545 NaN 0 509.7709655761719 PEAK HCD FTMS 0 0 0 1426 1416.6063232421875 0.6692103934400441 -6 0.05347251892089844 2 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))EYLGKYFC(Carbamidomethyl (C))QC(Carbamidomethyl (C))_ ENSG00000145016|ENST00000296343|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;nc|ENSG00000145016|Q92622-3|RUBCN 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80571.2 NaN 447 979 1426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1430 19.752 NaN 125280 35 0 17744 0.327 -1 HPESERISM 9 36 551.2533201502873 1100.4920873673746 2 551.2532348632812 MULTI HCD FTMS 0 0 0 1429 54414.90625 0.9300336455985823 -5 0.045413970947265625 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3153106171542 734.3153106171542 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 97191.6 NaN 448 980 1429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1431 19.757 NaN 17250 35 0 4247.7 0.261 + 8753 HHQNVLFHH 9 12 584.789411273338 NaN 0 584.7892456054688 PEAK HCD FTMS 0 0 0 1429 6813.10107421875 0.621223479677206 15 -0.12381362915039062 2 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82846.4 NaN 449 980 1429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1434 19.77 NaN 25983 35 0 5762.7 0.327 + -1 NRDVTTQAM 9 16 526.2454290828891 1050.4763052325782 2 526.24560546875 MULTI HCD FTMS 0 0 0 1433 14751.6845703125 0.39411150787939936 45 -0.4194831848144531 1 Oxidation (M) _NRDVTTQAM(Oxidation (M))_ REV__ENSG00000166224|ENST00000373202|SGPL1 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80285.7 NaN 450 982 1433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1435 19.774 NaN 14783 35 0 2121.4 0.261 + 4403 EYDWVQFR 8 17 571.766722429205 1141.5188919252098 2 571.7658081054688 MULTI HCD FTMS 0 0 0 1433 8935.1513671875 0.8633040476315833 -8 0.07287979125976562 2 Unmodified _EYDWVQFR_ REV__ENSG00000112667|ENST00000230431|DNPH1;REV__ENST00000393987.2_1_6:43193473-43193632:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 80554.5 NaN 451 982 1433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1437 19.78 NaN 24434 35 0 4106.8 0.411 + -1 CKKRWHYKRKR 11 17 563.3190666098678 NaN 0 563.2535400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))KKRWHYKRKR_ REV__ENST00000548676.5_1_12:30884330-30884372:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94642.6 NaN 452 983 1436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1439 19.788 NaN 66316 35 0 10960 0.411 + 19559 NSSKDVAVM 9 34 483.73184083232377 965.4491287314476 2 483.7314147949219 MULTI HCD FTMS 0 0 0 1438 32272.169921875 0.17869667472700643 -20 0.17084884643554688 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 43.77239144664712 0.04802738721622131 1 [NS]S[WR]AV{M(Oxidation (M))|F} 8 3 [NS] + + 41.387 5.2288 2.6004 4.2869 4.2869 60.464 0 0 0 0 30.929862658764264 0 0 0 1.9247425010840047 0 0 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.2869 - 24 + NaN NaN 94975.6 NaN 453 984 1438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1442 19.803 NaN 12455 35 0 2594 0.411 + 3306 EEGYNHLECH 10 18 615.7433471679688 NaN 0 615.7433471679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _EEGYNHLECH_ ENSG00000197629|ENST00000361050|MPEG1;MPEG1|p.G560Afs*43|1|0.33|ENSG00000197629|chr11:59211187-59211187|C/-|frameshift_variant 0.15932191953741626 0.34004793154798674 1 R 1 10 5.4846 0 0 0.44609 0 0 170.94514384589985 899.4013155572874 1070.3464594031873 0 0 0 0 0 0 0 0 0 R 0.44609 - 1 + NaN NaN 84483.2 NaN 454 986 1441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1445 19.819 NaN 18597 35 0 3580.5 0.327 + 15889 LPLKKKGIEEC 11 17 629.3652472222424 NaN 0 629.3501586914062 PEAK HCD FTMS 0 0 0 1444 1633.1895751953125 0.38194906291066605 1 -0.009912490844726562 1 Unmodified _LPLKKKGIEEC_ REV__nc|ENSG00000292366|P51809-2|VAMP7;REV__NLGN4Y-VAMP7|1|fusion 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87879.4 NaN 455 988 1444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1446 19.823 NaN 28720 35 0 11807 0.261 -1 PNDCLLYGGD 10 17 554.7344360351562 NaN 0 554.7344360351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PNDCLLYGGD_ DMXL1|p.C283Y|1|0.2|ENSG00000172869|chr5:119118919-119118919|G/A|missense_variant;ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88660 NaN 456 988 1444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1448 19.829 NaN 11789 35 0 3829.6 0.411 + -1 LCLEVLLDMM 10 11 626.8024149619731 NaN 0 626.802978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))LEVLLDM(Oxidation (M))M_ REV__ENSG00000106078|ENST00000265136|COBL;REV__ENST00000443421.1_1_X:118072328-118072745:+|nuORF;REV__nc|ENSG00000106078|O75128-2|COBL;REV__nc|ENSG00000106078|O75128-3|COBL;REV__nc|ENSG00000106078|O75128-4|COBL;REV__nc|ENSG00000106078|O75128-5|COBL;REV__nc|ENSG00000106078|O75128-7|COBL 0 0.34018428902965525 1 G 1 -1 4.6041 0 0 0.36786 0 0 625.8471872464087 565.7052096002561 1191.5523968466648 0 0 0 0 0 0 0 0 0 G 0.36786 - 1 + NaN NaN 85391.6 NaN 457 989 1447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1451 19.844 NaN 79736 35 0 14276 0.411 + 25975 SPDRADPEA 9 38 479.21732964930527 956.4201063654106 2 479.21710205078125 MULTI HCD FTMS 0 0 0 1450 31873.359375 0.6042758270118088 8 -0.06579017639160156 1 Unmodified _SPDRADPEA_ ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant 15.248480904072842 0.22861284681709862 1 DPEA 4 5 35.327 0 0 3.6937 0 0 526.2508412091812 0 526.2508412091812 0 24.86952888088478 0 0 0 0.7614393726401688 0 0 0 + DPEA 3.6937 + + 53 NaN NaN 108427.6 NaN 458 991 1450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1453 19.852 NaN 61789 35 0 7827.3 0.412 -1 0 45 442.7753150364946 883.5360771397892 2 442.7750549316406 MULTI HCD FTMS 0 0 0 1452 31571.0859375 0.05904953703725351 43 -0.4191455841064453 1 NaN NaN 1 {[VA]|[{I|L}G]}{[RE]|[WV]}VAA 7 -1 20.329 0 0 2.3009 0 0 0 184.1128322300781 184.1128322300781 0.7251475338628666 0 0 0 0 0.3807196863200844 1.3010299956639813 0 0 {[VA]|[{I|L}G]}{[RE]|[WV]}VAA 2.3009 - 31 NaN NaN 106351.2 NaN 459 992 1452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1455 19.86 NaN 35510 35 0 6157.8 0.411 -1 SESAQSKML 9 28 498.73707943714504 995.4596059410901 2 498.73687744140625 MULTI HCD FTMS 0 0 0 1454 24627.517578125 0.10802343793584475 -13 0.10818099975585938 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 24.990960013464015 0.14443998892849796 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6088 0 0 717.3299427716812 0 717.3299427716812 0 17.870156338638594 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6088 + + 12 NaN NaN 93697.7 NaN 460 993 1454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1458 19.876 NaN 116110 35 0 13166 0.327 -1 HPESERISM 9 30 551.2533201502873 1100.4920873673746 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1457 52686.375 0.9004904132242992 10 -0.09541511535644531 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3141057541793 734.3141057541793 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 95843 NaN 461 995 1457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1459 19.88 NaN 15499 35 0 3483.8 0.261 + 12570 KTEEEHFLH 9 14 585.2829444134932 NaN 0 585.2824096679688 PEAK HCD FTMS 0 0 0 1457 4208.8828125 0.3570016505305206 24 -0.2318859100341797 2 Unmodified _KTEEEHFLH_ REV__ENSG00000110060|ENST00000227474|PUS3 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89568.9 NaN 462 995 1457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1461 19.886 NaN 28236 35 0 5314.8 0.411 + -1 SHCASGPCSN 10 18 510.1874752494843 1018.3603975657686 2 510.1873779296875 MULTI HCD FTMS 0 0 0 1460 6099.1240234375 0.7060722751762043 -8 0.06712722778320312 1 Carbamidomethyl (C) _SHCASGPC(Carbamidomethyl (C))SN_ REV__ENST00000355703.3_1_11:65393405-65393489:+|nuORF 0.4007161486938917 0.47318265037741464 1 N 1 -1 4.6041 0 0 0.45211 0 0 527.5236015127185 373.76886926822505 901.2924707809436 0 0 0 0 0 0 0 0 0 N 0.45211 + + 1 + NaN NaN 87409.2 NaN 463 996 1460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1463 19.894 NaN 34093 35 0 5234.5 0.411 + -1 DSNARQLTM 9 40 526.2454290828891 1050.4763052325782 2 526.24560546875 MULTI HCD FTMS 0 0 0 1462 13752.7529296875 0.3674236775317077 60 -0.6073017120361328 1 Oxidation (M) _DSNARQLTM(Oxidation (M))_ REV__ENSG00000138411|ENST00000644978|HECW2 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2846 0 0 885.4302827489829 0 885.4302827489829 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2846 + + 8 + NaN NaN 95931.8 NaN 464 997 1462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1465 19.902 NaN 8377.2 35 0 1631.5 0.411 -1 HDECTPQQTM 10 15 624.2362130989311 NaN 0 624.23681640625 PEAK HCD FTMS 0 0 0 1464 4117.4658203125 0.5302249279415685 -30 0.2517223358154297 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94650.3 NaN 465 998 1464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1467 19.91 NaN 207900 35 0 41918 0.327 + 19560 NSSKDVAVM 9 40 483.73184083232377 965.4491287314476 2 483.7315673828125 MULTI HCD FTMS 0 0 0 1466 161541.78125 0.894485223916896 -5 0.04170989990234375 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 69.10491478415734 0.009377850133389008 1 [NS]S{[QD]|[EN]|[WG]|[KD]|[RS]}VAV{M(Oxidation (M))|F} 9 0 + 51.832 0 0 5.3686 5.3686 91.744 0 0 0 36.34697482522071 10.633637307377057 10.633637307377057 51.831524890260994 0 1.9247425010840047 0 0.3252574989159953 0 + + [NS]S{[QD]|[EN]|[WG]|[KD]|[RS]}VAV{M(Oxidation (M))|F} 5.3686 + + 48 + NaN NaN 112927.8 NaN 466 999 1466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1468 19.914 NaN 34485 35 0 6150.4 0.261 + 3735 EMTTSLDTVE 10 23 563.2531612204673 NaN 0 563.25341796875 PEAK HCD FTMS 0 0 0 1466 3509.99658203125 0.6214713203978746 -13 0.106903076171875 2 Unmodified _EMTTSLDTVE_ nc|ENSG00000183625|P51677-2|CCR3 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82922.6 NaN 467 999 1466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1469 19.918 NaN 17113 35 0 3972.4 0.261 -1 0 18 629.3495074997022 1256.6844620662043 2 629.8495483398438 MULTI HCD FTMS 0 0 0 1466 4059.16943359375 0.03953344576384829 59 -0.5992355346679688 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78728.7 NaN 468 999 1466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1472 19.931 NaN 35669 35 0 4049.1 0.327 -1 NAESGRGQVM 10 25 532.7428957659591 NaN 0 532.7427978515625 PEAK HCD FTMS 0 0 0 1471 15775.203125 0.7255414092612414 95 -0.9135093688964844 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.189502756095605 0.3365986553207265 1 E 1 -1 6.9897 0 0 0.65725 0 0 185.07580510438066 746.3262423150999 931.4020474194806 0 0 0 0 0 0 0 0 0 E 0.65725 + + 2 + NaN NaN 80550.5 NaN 469 1001 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1473 19.935 NaN 13046 35 0 2897.2 0.261 + 32649 WMYFYEYE 8 9 615.7437476594505 NaN 0 615.7442626953125 PEAK HCD FTMS 0 0 0 1471 4469.939453125 0.5026825297531713 4 -0.04033470153808594 2 Unmodified _WMYFYEYE_ ENSG00000169255|ENST00000320474|B3GALNT1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80370.1 NaN 470 1001 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1474 19.939 NaN 26069 35 0 4543.9 0.262 + 31244 VVRKKLGVK 9 21 513.8604714252368 NaN 0 513.8602294921875 PEAK HCD FTMS 0 0 0 1471 3196.884521484375 0.6114597081454125 1 -0.016599655151367188 3 Unmodified _VVRKKLGVK_ REV__ZFHX4|p.E2641K|1|0.26|ENSG00000091656|chr8:76854842-76854842|G/A|missense_variant 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85328.2 NaN 471 1001 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1475 19.942 NaN 36853 35 0 12469 0.261 + 34022 YMPALARFR 9 17 562.8070840021784 NaN 0 562.80712890625 PEAK HCD FTMS 0 0 0 1471 5339.45556640625 0.9500407810500695 11 -0.10540008544921875 4 Unmodified _YMPALARFR_ REV__ENSG00000124209|ENST00000244040|RAB22A;REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85858.3 NaN 472 1001 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1477 19.948 NaN 14669 35 0 2344.8 0.411 + -1 KKDKYMSCF 9 24 583.2724215114843 NaN 0 583.2724609375 PEAK HCD FTMS 0 0 0 1476 4109.75146484375 0.608665911496397 1 -0.0081939697265625 1 Oxidation (M) _KKDKYM(Oxidation (M))SCF_ REV__tr|U7SP75|U7SP75_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01755PE=4SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84676.4 NaN 473 1002 1476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1480 19.963 NaN 47132 35 0 4370.9 0.411 + 3912 EPRDGSPEA 9 31 479.21732964930527 956.4201063654106 2 479.2169189453125 MULTI HCD FTMS 0 0 0 1479 8426.373046875 0.15975264739756997 21 -0.20804214477539062 1 Unmodified _EPRDGSPEA_ ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ 5.731851221503515 0.3075653528928475 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99875.5 NaN 474 1004 1479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1483 19.979 NaN 305000 35 0 33534 0.327 + 25420 SESAQSKML 9 53 498.73707943714504 995.4596059410901 2 498.7369079589844 MULTI HCD FTMS 0 0 0 1482 227983.09375 1 0 0 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 121.5340881639634 0.001118397630175091 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 82.63 0 0 8.3007 8.3007 93.328 0 0 0 10.642492736872597 63.54425638516595 10.642492736872597 11.505149978319906 0 2.8182503180159344 0 2.4604093769761874 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L} 8.3007;7.1449 +;- + 137 NaN NaN 124650.6 NaN 475 1006 1482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1484 19.983 NaN 33304 35 0 3944.7 0.261 + -1 ECPNNCQQ 8 25 525.1925059075066 NaN 0 525.1920166015625 PEAK HCD FTMS 0 0 0 1482 4335.091796875 0.4262903849692185 1 -0.013219833374023438 2 2 Carbamidomethyl (C) _EC(Carbamidomethyl (C))PNNC(Carbamidomethyl (C))QQ_ REV__ENSG00000081479|ENST00000649046|LRP2 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104620.7 NaN 476 1006 1482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1485 19.987 NaN 17138 35 0 4342.9 0.261 + 8754 HHQNVLFHH 9 11 584.789411273338 NaN 0 584.790771484375 PEAK HCD FTMS 0 0 0 1482 4702.970703125 0.4288202674800747 41 -0.41983795166015625 3 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85100.1 NaN 477 1006 1482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1487 19.992 NaN 45670 35 0 4247.8 0.411 + -1 TLSSNRWM 8 35 526.7468791886943 NaN 0 526.7373657226562 PEAK HCD FTMS 0 0 0 1486 1272.3033447265625 0.13895394977797676 16 -0.1546611785888672 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))TLSSNRWM(Oxidation (M))_ REV__nc|ENSG00000137502|Q15771-2|RAB30 13.50788311687929 0.38822285293237185 1 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}]T 7 -1 15.233 0 0 1.4488 0 0 54.05193387316064 162.02292810611564 216.07486197927628 0 0 0 0 0 0.4247425010840047 0 0 0.3494850021680094 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}]T 1.4488 - 9 + NaN NaN 107281.4 NaN 478 1007 1486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1489 20 NaN 101630 35 0 11782 0.327 -1 HPESERISM 9 30 551.2533201502873 1100.4920873673746 2 551.2532348632812 MULTI HCD FTMS 0 0 0 1488 30167.341796875 0.5156058294112404 23 -0.233428955078125 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3139742486936 734.3139742486936 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 85805 NaN 479 1008 1488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1490 20.005 NaN 40233 35 0 12070 0.261 + 26316 SRYYQPYE 8 22 553.2508175835768 1104.4870822339535 2 553.2508544921875 MULTI HCD FTMS 0 0 0 1488 6463.3662109375 0.07839946975628348 -13 0.12445259094238281 2 Unmodified _SRYYQPYE_ ENSG00000181751|ENST00000319933|MACIR 0.6014990680409731 0.5410999795511968 1 D 1 8 5.4846 0 0 0.49657 0 0 839.5109297454754 146.92470728092033 986.4356370263957 0 0 0 0 0 0 0 0 0 D 0.49657 - 2 + NaN NaN 96634.7 NaN 480 1008 1488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1492 20.01 NaN 15086 35 0 2534.7 0.411 + 8755 HHQNVLFHH 9 17 584.789411273338 NaN 0 584.7885131835938 PEAK HCD FTMS 0 0 0 1491 6036.3583984375 0.550399521158736 44 -0.44946861267089844 1 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89597.2 NaN 481 1009 1491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1494 20.018 NaN 24641 35 0 6027.2 0.412 + -1 RKAVRSTMQ 9 16 546.8010642973416 NaN 0 546.7998046875 PEAK HCD FTMS 0 0 0 1493 1656.412109375 0.3234445456063186 -6 0.05500984191894531 1 Oxidation (M) _RKAVRSTM(Oxidation (M))Q_ REV__ENST00000503486.6_1_5:178195542-178224582:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87639 NaN 482 1010 1493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1496 20.026 NaN 40078 35 0 6813.1 0.327 + 25740 SKVLMSGELT 10 24 532.7866686437827 1063.5587843543653 2 532.7869262695312 MULTI HCD FTMS 0 0 0 1495 12241.330078125 0.5827440632509411 -6 0.05510520935058594 1 Unmodified _SKVLMSGELT_ REV__SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense 1.4819007175156935 0.4674597685733628 1 E 1 -1 5.4846 0 0 0.51568 0 0 185.17152957096533 746.3259981744749 931.4975277454403 0 0 0 0 0 0 0 0 0 E 0.51568 + + 6 + NaN NaN 95963 NaN 483 1011 1495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1497 20.031 NaN 13629 35 0 4382.4 0.261 -1 HDECTPQQTM 10 12 624.2362130989311 NaN 0 624.2359008789062 PEAK HCD FTMS 0 0 0 1495 6737.326171875 0.8675963419971127 -17 0.15811920166015625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96967.7 NaN 484 1011 1495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1499 20.036 NaN 134480 35 0 27113 0.327 + 19561 NSSKDVAVM 9 26 483.73184083232377 965.4491287314476 2 483.7315368652344 MULTI HCD FTMS 0 0 0 1498 129051.3359375 0.7145799200033845 8 -0.07941436767578125 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 51.629811660486645 0.02929079705179888 1 [NS]S[WR]AV 7 4 48.944 0 0 5.0695 0 0 0 162.02305017642814 162.02305017642814 48.9435694977913 0 0 0 0 1.9247425010840047 1.5228787452803376 0.3252574989159953 0 [NS]S[WR]AV 5.0695 - 21 + NaN NaN 98051.3 NaN 485 1012 1498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1500 20.041 NaN 34482 35 0 10156 0.261 + 7492 FWEERDIM 8 16 563.2531612204673 NaN 0 563.2527465820312 PEAK HCD FTMS 0 0 0 1498 4335.92333984375 0.7677078709852335 -2 0.018033981323242188 2 Unmodified _FWEERDIM_ ENSG00000067900|ENST00000399799|ROCK1;ENSG00000134318|ENST00000315872|ROCK2;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ROCK1-DCC|1|fusion;ROCK1|p.D202Cfs*9|1|0.26|ENSG00000067900|chr18:21044168-21044174|GTTATCA/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88620.2 NaN 486 1012 1498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1502 20.046 NaN 54630 35 0 6474 0.327 -1 0 33 442.7753150364946 883.5360771397892 2 442.775146484375 MULTI HCD FTMS 0 0 0 1501 13564.2138671875 0.025370066481632755 64 -0.6297225952148438 1 NaN NaN 1 R 1 -1 13.979 0 0 1.5822 0 0 709.4244266044361 0 709.4244266044361 0 13.979400086720375 0 0 0 0 0 0 0 R 1.5822 - 1 + NaN NaN 89592.4 NaN 487 1013 1501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1503 20.051 NaN 52879 35 0 10682 0.261 + 14697 LHAATSKN 8 26 421.2298423291181 NaN 0 421.219482421875 PEAK HCD FTMS 0 0 0 1501 1452.47314453125 0.39705969213396236 -2 0.019914627075195312 2 Unmodified _LHAATSKN_ ENSG00000155097|ENST00000518738|ATP6V1C1 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92211.5 NaN 488 1013 1501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1505 20.056 NaN 43273 35 0 3956.7 0.327 -1 NAESGRGQVM 10 31 532.7428957659591 NaN 0 532.742919921875 PEAK HCD FTMS 0 0 0 1504 13382.087890625 0.6154759992684314 108 -1.0351486206054688 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.735195868890462 0.33784334045437464 1 S 1 -1 6.9897 0 0 0.65725 0 0 314.1233514910994 659.2892550104124 973.4126065015118 0 0 0 0 0 0 0 0 0 S 0.65725 + + 2 + NaN NaN 93665 NaN 489 1014 1504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1506 20.061 NaN 78525 35 0 12374 0.263 + 1806 CPRDEMDFTS 10 27 400.8264364770753 NaN 0 400.34991455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _CPRDEMDFTS_ nc|ENSG00000139865|Q86TZ1-2|TTC6 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97441.5 NaN 490 1014 1504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1508 20.066 NaN 37698 35 0 5734 0.327 + 23628 RPQTQPPSGS 10 20 527.7673345744377 1053.5201162156752 2 527.7670288085938 MULTI HCD FTMS 0 0 0 1507 18639.923828125 0.6064486779537891 -4 0.03987693786621094 1 Unmodified _RPQTQPPSGS_ ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B 5.731851221503515 0.44496410492002586 1 [{I|L}A]S 3 9 8.9524 0 0 0.84976 0 0 0 779.3317965143186 779.3317965143186 8.952424927286843 0 0 0 0 0 0 0 0 [{I|L}A]S 0.84976 - 3 + NaN NaN 81849.7 NaN 491 1015 1507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1509 20.071 NaN 28243 35 0 5028.9 0.261 + 2290 DLRVQDTGR 9 20 530.2807170350786 1058.5468811369572 2 530.2807006835938 MULTI HCD FTMS 0 0 0 1507 13118.4619140625 0.4109224582179689 -9 0.08737754821777344 2 Unmodified _DLRVQDTGR_ REV__ENSG00000170011|ENST00000302541|MYRIP;REV__nc|ENSG00000170011|Q8NFW9-3|MYRIP;REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP;REV__nc|ENSG00000170011|Q8NFW9-6|MYRIP 3.2813086475875832 0.32614229037259 1 R 1 -1 20.485 0 0 1.9352 0 0 884.4348491318775 0 884.4348491318775 0 20.48455006504028 0 0 0 0.5 0 0 0 R 1.9352 + + 1 + NaN NaN 95475.3 NaN 492 1015 1507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1510 20.074 NaN 37765 35 0 9863.7 0.261 + -1 CQMMMEYSTEK 11 23 479.85516540468836 NaN 0 479.85552978515625 PEAK HCD FTMS 0 0 0 1507 7640.2119140625 0.7021428631046247 -4 0.03987693786621094 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))QMMMEYSTEK_ REV__ENSG00000137409|ENST00000373627|MTCH1;REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1 0.09484139111097674 0.34185110575506755 1 G 1 -1 4.732 0 0 0.4941 0 0 439.8370265107455 457.8176668756469 897.6546933863924 0 0 0 0 0 0.4247425010840047 0 0 0 G 0.4941 - 1 + NaN NaN 82703.9 NaN 493 1015 1507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1512 20.08 NaN 14038 35 0 5837 0.327 + 15890 LPLKKKGIEEC 11 12 629.3651969637357 NaN 0 629.348876953125 PEAK HCD FTMS 0 0 0 1511 4048.667236328125 1 0 0 1 Unmodified _LPLKKKGIEEC_ REV__nc|ENSG00000292366|P51809-2|VAMP7;REV__NLGN4Y-VAMP7|1|fusion 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84801.4 NaN 494 1016 1511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1513 20.084 NaN 37015 35 0 10891 0.261 + -1 FFFCFCPF 8 19 557.7322558507366 NaN 0 557.7323608398438 PEAK HCD FTMS 0 0 0 1511 3616.580810546875 0.590501621520953 -2 0.023302078247070312 2 Carbamidomethyl (C) _FFFCFC(Carbamidomethyl (C))PF_ REV__ENST00000487509.6_1_16:31199536-31202756:+|nuORF 0.7936320650641473 0.38822285293237185 1 A 1 -1 0.3786 0 0 0.034003 0 0 889.4197138725684 149.97405420474846 1039.393768077317 0 0 0 0 0 0 0 0 0 A 0.034003 - 1 + NaN NaN 79877.6 NaN 495 1016 1511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1515 20.09 NaN 140590 35 0 16361 0.411 + 19377 NPEHASVAM 9 57 486.21624981001764 970.4179466868353 2 486.21600341796875 MULTI HCD FTMS 0 0 0 1514 90614.84375 0.2673418758328863 -11 0.11081504821777344 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 103.35351024395868 0.004027461563756449 1 NPEHASVA{M(Oxidation (M))|F} 9 0 + 66.874 0 0 6.8912 6.8912 93.205 0 0 0 53.76947695378034 10.33121116138409 10.33121116138409 26.02211747517542 0 2.2134679910804405 0 0.25 0 + + NPEHASVA{M(Oxidation (M))|F};[RD][YN]SVA{M(Oxidation (M))|F};NP[NP]T[NP]A{M(Oxidation (M))|F} 6.8912;4.2097;3.9452 +;-;- + 206 + NaN NaN 132762.6 NaN 496 1017 1514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1517 20.098 NaN 186020 35 0 17640 0.327 + 25421 SESAQSKML 9 52 498.73702186417796 995.459490795156 2 498.73687744140625 MULTI HCD FTMS 0 0 0 1516 124781.921875 0.49744387108661375 -8 0.07943534851074219 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 83.42873516780209 0.004742894019233849 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 {[ES]|[DT]|[{I|L}C]} + + 63.39 5.2288 2.4199 6.3679 6.3679 63.913 0 0 0 0 42.42107276150385 0 0 0 2.079689690656103 0 0.7059771852360797 0.3807196863200844 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 6.3679 + + 62 + NaN NaN 113163.9 NaN 497 1018 1516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1518 20.102 NaN 40353 35 0 9400.2 0.261 + -1 GFSPRCFM 8 24 509.2186815567381 NaN 0 509.2198181152344 PEAK HCD FTMS 0 0 0 1516 7132.7705078125 0.46944272372991663 -23 0.22188186645507812 2 Carbamidomethyl (C),Oxidation (M) _GFSPRC(Carbamidomethyl (C))FM(Oxidation (M))_ REV__ENST00000508948.5_1_5:90676631-90676739:-|nuORF 2.8892196856762586 0.38822285293237185 1 Q 1 -1 3.0989 0 0 0.30489 0 0 398.52231076796994 486.80906091861567 885.3313716865856 0 0 0 0 0 0 0 0 0 Q 0.30489 - 1 + NaN NaN 91441.5 NaN 498 1018 1516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1520 20.108 NaN 83918 35 0 11735 0.411 + 219 AEWAVRSM 8 52 475.2329314120693 NaN 0 475.2236633300781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _AEWAVRSM_ REV__ENSG00000142920|ENST00000294517|AZIN2;REV__ENST00000471119.5_1_1:33546965-33585780:+|nuORF;REV__ENST00000478204.5_1_1:33557816-33585780:+|nuORF;REV__ENST00000481886.5_1_1:33546965-33585780:+|nuORF;REV__nc|ENSG00000142920|Q96A70-2|AZIN2 6.2057823575117 0.38822285293237185 1 AGEVRA 6 -1 29.641 0 0 3.1252 0 0 200.09645409889487 162.02277551822502 362.1192296171199 0 0 0 0 0 0 0 0 0 AGEVRA 3.1252 - 62 + NaN NaN 103301.8 NaN 499 1019 1519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1522 20.116 NaN 33050 35 0 5634.3 0.327 + -1 LFGVVGCYI 9 18 514.267895111879 1026.521237290558 2 514.2677001953125 MULTI HCD FTMS 0 0 0 1521 12408.333984375 0.3174765473108026 -7 0.06945991516113281 1 Carbamidomethyl (C) _LFGVVGC(Carbamidomethyl (C))YI_ REV__ENSG00000154889|ENST00000588072|MPPE1;REV__nc|ENSG00000154889|Q53F39-4|MPPE1 5.230669730166228 0.3113646817964458 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87773.3 NaN 500 1020 1521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1523 20.12 NaN 15662 35 0 4541.2 0.261 + 8256 GTEEEEDFFQ 10 12 615.7436173765208 NaN 0 615.7439575195312 PEAK HCD FTMS 0 0 0 1521 7965.1630859375 1 0 0 2 Unmodified _GTEEEEDFFQ_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 0.15932191953741626 0.34004793154798674 1 P 1 -1 8.8515 0 0 0.71994 0 0 596.7135398294103 532.6762789361936 1129.3898187656039 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.71994 - 1 + NaN NaN 76860.1 NaN 501 1020 1521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1525 20.126 NaN 100910 35 0 9222.2 0.327 -1 TPNEERNVM 9 40 553.2508175835768 1104.4870822339535 2 553.2506713867188 MULTI HCD FTMS 0 0 0 1524 82441.453125 1 0 0 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 23.80106514851385 0.15472041655325736 1 TPNEE 5 -1 39.196 0 0 3.5488 0 0 0 531.2340181940061 531.2340181940061 10.255762612236907 0 0 0 0 0.4247425010840047 0 0 0 TPNEE 3.5488 + + 48 + NaN NaN 97998.9 NaN 502 1021 1524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1526 20.13 NaN 35582 35 0 4582.2 0.261 + -1 EQPQCQPE 8 26 508.21163813352297 NaN 0 508.21173095703125 PEAK HCD FTMS 0 0 0 1524 11516.6708984375 0.5163621405014983 -212 1.8479633331298828 2 Carbamidomethyl (C) _EQPQC(Carbamidomethyl (C))QPE_ REV__ENSG00000160961|ENST00000292530|ZNF333;REV__nc|ENSG00000160961|Q96JL9-3|ZNF333 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85689.7 NaN 503 1021 1524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1527 20.134 NaN 52424 35 0 12338 0.261 + 30895 VQSTQQEH 8 29 478.7252409096106 955.4359288860212 2 478.72454833984375 MULTI HCD FTMS 0 0 0 1524 12037.9736328125 0.09378993166228504 -11 0.10742950439453125 3 Unmodified _VQSTQQEH_ ENST00000423517.6_1_7:82450377-82450656:-|nuORF 1.844237919475145 0.5392561982033289 1 H 1 7 4.6041 0 0 0.48188 0 0 415.20986795027744 400.14243494205317 815.3523028923306 0 0 0 0 0 0 0 0 0 + H 0.48188 + + 5 + NaN NaN 92447.9 NaN 504 1021 1524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1529 20.139 NaN 18345 35 0 6189.4 0.327 + -1 YLCTVSDTMK 10 11 588.767255125919 NaN 0 588.7677612304688 PEAK HCD FTMS 0 0 0 1528 6307.56787109375 0.7490852656826384 3 -0.0323486328125 1 Oxidation (M) _YLCTVSDTM(Oxidation (M))K_ REV__ENSG00000188906|ENST00000298910|LRRK2;REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF;REV__LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98200.8 NaN 505 1022 1528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1531 20.147 NaN 61630 35 0 11341 0.411 + 11796 KEIASIYQK 9 41 540.308463728001 1078.602374522802 2 540.3082885742188 MULTI HCD FTMS 0 0 0 1530 11259.6005859375 0.22407022514315442 -8 0.08050346374511719 1 Unmodified _KEIASIYQK_ REV__ENSG00000123106|ENST00000536442|CCDC91;REV__ENST00000535520.5_1_12:28412355-28702103:+|nuORF;REV__ENST00000540401.5_1_12:28421609-28702103:+|nuORF;REV__nc|ENSG00000123106|Q7Z6B0-2|CCDC91 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109143.3 NaN 506 1023 1530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1533 20.155 NaN 30918 35 0 4388.5 0.326 -1 QNCHCHHG 8 21 525.1927117771171 1048.370870621034 2 525.1923828125 MULTI HCD FTMS 0 0 0 1532 8106.28662109375 0.6866495297338882 -6 0.05703163146972656 1 2 Carbamidomethyl (C) _QNC(Carbamidomethyl (C))HC(Carbamidomethyl (C))HHG_ SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|70|3|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|53|1|anti-sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|79|3|anti-sense 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85691.3 NaN 507 1024 1532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1534 20.159 NaN 19815 35 0 6211.7 0.261 -1 AFLCLHQCQ 9 13 588.767255125919 NaN 0 588.7701416015625 PEAK HCD FTMS 0 0 0 1532 6150.89404296875 0.7304787189811155 5 -0.05764961242675781 2 2 Carbamidomethyl (C) _AFLC(Carbamidomethyl (C))LHQC(Carbamidomethyl (C))Q_ ENST00000220592.9_2_8:141534574-141534862:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82459 NaN 508 1024 1532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1535 20.163 NaN 18182 35 0 4035.6 0.261 + 8756 HHQNVLFHH 9 15 584.789411273338 NaN 0 584.7886352539062 PEAK HCD FTMS 0 0 0 1532 5542.24365234375 0.5053457815203032 59 -0.5714797973632812 3 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 D 1 9 5.4846 0 0 0.46974 0 0 439.83924627538846 609.6809786432249 1049.5202249186134 0 0 0 0 0 0 0 0 0 D 0.46974 - 1 + NaN NaN 79183.3 NaN 509 1024 1532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1536 20.166 NaN 47886 35 0 6952.9 0.261 -1 HQWPMTAM 8 31 509.2186815567381 NaN 0 509.2179870605469 PEAK HCD FTMS 0 0 0 1532 4146.37109375 0.27289308379023497 -17 0.1626739501953125 4 Oxidation (M) _HQWPMTAM(Oxidation (M))_ OR5B12|p.F111Sfs*24|1|0.21|ENSG00000172362|chr11:58439820-58439820|A/-|frameshift_variant 4.3292370932331545 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93949.5 NaN 510 1024 1532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1539 20.179 NaN 40577 35 0 5471.3 0.327 -1 NAESGRGQVM 10 30 532.7428957659591 NaN 0 532.7431030273438 PEAK HCD FTMS 0 0 0 1538 16595.572265625 0.7632722566986494 120 -1.1254844665527344 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 13.614867670302875 0.3285318492764617 1 VH 2 -1 14.776 0 0 1.3894 0 0 165.04260197938066 659.2960909479124 824.3386929272931 0 0 0 0 0 0.3807196863200844 0 0 0 VH 1.3894 - 6 + NaN NaN 85959.4 NaN 511 1026 1538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1540 20.184 NaN 42497 35 0 9651.1 0.261 + 23728 RQWVKWPM 8 20 565.8000991663339 NaN 0 565.8001708984375 PEAK HCD FTMS 0 0 0 1538 6512.4140625 0.47219448143740256 130 -1.2073421478271484 2 Unmodified _RQWVKWPM_ REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86757.7 NaN 512 1026 1538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1542 20.189 NaN 33284 35 0 4436.9 0.326 + 2291 DLRVQDTGR 9 20 530.2807170350786 1058.5468811369572 2 530.2806396484375 MULTI HCD FTMS 0 0 0 1541 19762.220703125 0.6190314355731775 3 -0.03145408630371094 1 Unmodified _DLRVQDTGR_ REV__ENSG00000170011|ENST00000302541|MYRIP;REV__nc|ENSG00000170011|Q8NFW9-3|MYRIP;REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP;REV__nc|ENSG00000170011|Q8NFW9-6|MYRIP 6.2057823575117 0.30397260197431997 1 R 1 -1 21.99 0 0 2.0773 0 0 884.4351237900806 0 884.4351237900806 0 21.989700043360187 0 0 0 0.5 0 0 0 R 2.0773 + + 1 + NaN NaN 83888.2 NaN 513 1027 1541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1543 20.194 NaN 43976 35 0 9964.8 0.261 -1 0 25 442.7753150364946 883.5360771397892 2 442.77508544921875 MULTI HCD FTMS 0 0 0 1541 12815.4599609375 0.023969621415966487 78 -0.7424678802490234 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85631 NaN 514 1027 1541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1544 20.197 NaN 31535 35 0 11886 0.261 -1 0 12 527.7673345744377 1053.5201162156752 2 527.7669067382812 MULTI HCD FTMS 0 0 0 1541 11288.009765625 0.36725464450470047 8 -0.08229255676269531 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86395.2 NaN 515 1027 1541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1546 20.203 NaN 32273 35 0 4974.5 0.327 -1 0 19 526.2454290828891 1050.4763052325782 2 526.2449951171875 MULTI HCD FTMS 0 0 0 1545 8328.6806640625 0.2225121395129 91 -0.8654289245605469 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83166.5 NaN 516 1028 1545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1547 20.207 NaN 16140 35 0 4359 0.261 + 24055 RWSRLFKQH 9 16 629.3491899145532 NaN 0 629.3494262695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RWSRLFKQH_ DNAH9|p.L1105R|1|0.3|ENSG00000007174|chr17:11669755-11669755|T/G|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88991.3 NaN 517 1028 1545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1549 20.213 NaN 453160 35 0 58669 0.411 + 19378 NPEHASVAM 9 81 486.21624981001764 970.4179466868353 2 486.21600341796875 MULTI HCD FTMS 0 0 0 1548 328935.375 0.9704613123089328 1 -0.008054733276367188 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 155.02607137521346 3.513045939247001E-06 1 NPEHASVA{M(Oxidation (M))|F} 9 0 + 87.723 0 0 9.0397 9.0397 89.409 0 0 0 2.870156338638594 2.870156338638594 2.870156338638594 2.870156338638594 0 2.6237125054200234 0 0.6694451763165201 0 + + NPEHASVA{M(Oxidation (M))|F};[NP]EHASVA{M(Oxidation (M))|F};NPEHGTVA{M(Oxidation (M))|F};NP[NP]TPNA{M(Oxidation (M))|F};[TA]Y{[RE]|[WV]}NA{M(Oxidation (M))|F};[NP][HT]{[DA]|[EG]}VA{M(Oxidation (M))|F};[RD][YN]SVA{M(Oxidation (M))|F};[TA]Y{[RE]|[WV]}GGA{M(Oxidation (M))|F};[NP][NP]TPNA{M(Oxidation (M))|F};[NP]EHV{[SA]|[TG]}A{M(Oxidation (M))|F} 9.0397;8.744;7.7226;5.8574;5.4315;4.9888;4.9076;4.477;4.3942;4.2028 +;+;-;-;-;-;-;-;-;- + 1440 + NaN NaN 236411.1 NaN 518 1029 1548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1551 20.221 NaN 290960 35 0 26222 0.327 + 25422 SESAQSKML 9 52 498.73702186417796 995.459490795156 2 498.7368469238281 MULTI HCD FTMS 0 0 0 1550 185224.203125 0.7383973835066664 4 -0.043292999267578125 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 121.5340881639634 0.001118397630175091 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 81.661 0 0 8.2033 8.2033 90.57 0 0 0 8.252574989159953 14.577570906191895 8.252574989159953 8.252574989159953 0 2.8182503180159344 0 2.4604093769761874 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L};{[ES]|[DT]|[{I|L}C]}SAQS{M(Oxidation (M))|F}K{I|L};{[MG]|[TS]}DAQS{M(Oxidation (M))|F}K{I|L} 8.2033;7.3743;6.4696;5.6406 +;-;-;- + 202 NaN NaN 127069.6 NaN 519 1030 1550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1552 20.225 NaN 74377 35 0 9128 0.261 -1 HPESERISM 9 25 551.2533201502873 1100.4920873673746 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1550 25943.2578125 0.44340979898432287 45 -0.43947601318359375 2 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3140178755569 734.3140178755569 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 9 + NaN NaN 86103.9 NaN 520 1030 1550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1553 20.228 NaN 30671 35 0 8364.5 0.261 + 8622 HDSYYDTW 8 12 543.7124203416352 1085.4102877500702 2 544.2138671875 MULTI HCD FTMS 0 0 0 1550 1714.897216796875 0.2592346321356038 -3 0.03145408630371094 3 Unmodified _HDSYYDTW_ ENST00000407479.5_1_16:3713563-3713731:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81658.3 NaN 521 1030 1550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1555 20.234 NaN 631410 35 0 107590 0.327 + 2976 EAAGEVRAM 9 54 475.22408843593456 948.4336239386691 2 475.22381591796875 MULTI HCD FTMS 0 0 0 1554 348470.625 0.7316242640493935 -17 0.1774883270263672 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 137.42381684818497 0.00015474832393368816 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 79.408 0 0 8.3725 8.3725 88.426 0 0 0 2.3687118114943218 2.3687118114943218 2.3687118114943218 2.724928274552596 0 2.430884548956689 0 0.3494850021680094 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}[RD]V[VG]A{M(Oxidation (M))|F} 8.3725;8.0852;7.9906;7.4022;7.3075;5.3601;5.2167;5.122;4.439;4.4374 +;-;-;-;-;-;-;-;-;- + 664 + NaN NaN 170832.4 NaN 522 1031 1554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1556 20.238 NaN 71950 35 0 12566 0.261 -1 0 25 400.3500061035156 NaN 0 400.3500061035156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88971.1 NaN 523 1031 1554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1558 20.244 NaN 777790 35 0 90351 0.327 + 9317 HPQTHETAL 9 66 517.2565029553023 1032.4984529774044 2 517.2566528320312 MULTI HCD FTMS 0 0 0 1557 404645.34375 0.9669384606871684 1 -0.00995635986328125 1 Unmodified _HPQTHETAL_ ENSG00000107854|ENST00000371627|TNKS2 110.5527297667825 0.0028521687250969148 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QHTETA{I|L} 9 2 + 74.288 0 0 7.195 7.195 87.874 0 0 0 8.678090289248388 38.81487112228239 8.678090289248388 5.7352282311924085 0 1.7672203223519531 0 1.774227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QHTETA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QTHETA{I|L};HPQTHETA{I|L};HP[AG]THETA{I|L};[R{M(Oxidation (M))|F}]ET[QA]Q[PG];HP[TP]T[QA]Q[PG];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QT{[ET]|[MV]}HA{I|L};[TA][VP]MT[TP]C{I|L};[R{M(Oxidation (M))|F}]ET[QA][AG][PG];HPQT[VP][NS][PG] 7.195;6.6395;5.8263;4.6689;3.1805;3.1605;2.9593;2.8575;2.2887;1.6953 -;+;+;-;-;-;-;-;-;- + 1420 NaN NaN 200197.5 NaN 524 1032 1557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1559 20.248 NaN 54693 35 0 10816 0.261 -1 TPNEERNVM 9 29 553.2508175835768 1104.4870822339535 2 553.250732421875 MULTI HCD FTMS 0 0 0 1557 25488.4609375 0.3091704472852231 11 -0.11353111267089844 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 4.897010918128616 0.31389406404703984 1 [TP]NE 4 -1 13.188 0 0 1.194 0 0 0 660.2768319844009 660.2768319844009 13.187587626244124 0 0 0 0 0 0 0 0 [TP]NE 1.194 + + 7 + NaN NaN 83323.1 NaN 525 1032 1557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1561 20.254 NaN 196770 35 0 27336 0.327 + 21827 QASNSAHEL 9 54 478.7252409096106 955.4359288860212 2 478.7249450683594 MULTI HCD FTMS 0 0 0 1560 111355.859375 0.8675927327593065 1 -0.009937286376953125 1 Unmodified _QASNSAHEL_ ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3 24.020572477871973 0.15282392193088168 1 H{M(Oxidation (M))|F}{I|L} 3 7 21.682 0 0 2.2694 0 0 540.2290516584 0 540.2290516584 0 8.494850021680094 0 0 0 0 0 0 0 H{M(Oxidation (M))|F}{I|L} 2.2694 - 39 NaN NaN 124141.1 NaN 526 1033 1560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1562 20.258 NaN 29716 35 0 11005 0.261 + -1 EYDESQRC 8 13 543.7124203416352 1085.4102877500702 2 543.7114868164062 MULTI HCD FTMS 0 0 0 1560 4595.81103515625 0.4889032172005951 5 -0.050807952880859375 2 Carbamidomethyl (C) _EYDESQRC(Carbamidomethyl (C))_ REV__ENSG00000148400|ENST00000651671|NOTCH1;REV__NOTCH1-SDCCAG3|1|fusion;REV__NOTCH1|p.C1169Afs*10|1|0.38|ENSG00000148400|chr9:136507961-136507961|G/-|frameshift_variant;REV__NOTCH1|p.C1311Afs*134|1|0.5|ENSG00000148400|chr9:136506610-136506610|A/-|frameshift_variant;REV__NOTCH1|p.C1352Lfs*48|1|0.32|ENSG00000148400|chr9:136505828-136505841|GCGCAGGCTGCCGC/-|frameshift_variant;REV__NOTCH1|p.D1267Gfs*24|1|0.53|ENSG00000148400|chr9:136506817-136506818|-/C|frameshift_variant;REV__NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;REV__NOTCH1|p.E1148Sfs*31|1|0.1|ENSG00000148400|chr9:136508023-136508023|C/-|frameshift_variant;REV__NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;REV__NOTCH1|p.H1299Sfs*48|1|0.15|ENSG00000148400|chr9:136506722-136506723|-/A|frameshift_variant;REV__NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant;REV__NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91328.1 NaN 527 1033 1560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1565 20.271 NaN 73407 35 0 17131 0.327 + 12363 KNTSELLFK 9 31 540.308463728001 1078.602374522802 2 540.30810546875 MULTI HCD FTMS 0 0 0 1564 38295.29296875 0.7620905246095291 4 -0.04989814758300781 1 Unmodified _KNTSELLFK_ ENSG00000154814|ENST00000285083|OXNAD1;ENST00000442255.5_1_3:16313687-16345066:+|nuORF 5.731851221503515 0.3075653528928475 1 N 1 8 2.4743 0 0 0.22939 0 0 653.8109449347145 307.72226892642817 961.5332138611427 0 0 0 0 0 0 0 0 0 + N 0.22939 + + 1 + NaN NaN 93050.7 NaN 528 1035 1564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1566 20.276 NaN 54110 35 0 10332 0.261 + -1 LFGVVGCYI 9 18 514.267895111879 1026.521237290558 2 514.2676391601562 MULTI HCD FTMS 0 0 0 1564 29941.62890625 0.766079070565602 8 -0.08609199523925781 2 Carbamidomethyl (C) _LFGVVGC(Carbamidomethyl (C))YI_ REV__ENSG00000154889|ENST00000588072|MPPE1;REV__nc|ENSG00000154889|Q53F39-4|MPPE1 5.230669730166228 0.3113646817964458 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94206.1 NaN 529 1035 1564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1568 20.281 NaN 75270 35 0 8369.5 0.327 + 8572 HAVDGDSKL 9 38 471.23799557009187 940.4614382069838 2 471.23779296875 MULTI HCD FTMS 0 0 0 1567 38835.5 0.7157251820469165 -3 0.027395248413085938 1 Unmodified _HAVDGDSKL_ ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32 24.990960013464015 0.14443998892849796 1 [HA][DV][DG]SK{I|L} 9 0 + 34.248 0 0 3.6416 3.6416 88.547 0 0 0 1.8127046678176697 31.77346719650137 1.8127046678176697 34.24771730490184 0 1.2887254899964358 0 0.4247425010840047 0 + + [HA][DV][DG]SK{I|L} 3.6416 + + 12 NaN NaN 89349 NaN 530 1036 1567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1569 20.286 NaN 31136 35 0 5759.5 0.261 + -1 FMQEMPPY 8 24 529.7214004683296 NaN 0 529.7217407226562 PEAK HCD FTMS 0 0 0 1567 4052.181640625 0.5915905691877565 1 -0.013273239135742188 2 Oxidation (M) _FM(Oxidation (M))QEMPPY_ REV__ENSG00000033122|ENST00000651989|LRRC7;REV__nc|ENSG00000033122|Q96NW7-2|LRRC7;REV__nc|ENSG00000033122|Q96NW7|LRRC7 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87026.8 NaN 531 1036 1567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1570 20.289 NaN 12455 35 0 3931.1 0.261 + 18078 MMMNMLMGNAS 11 13 615.7436173765208 NaN 0 615.7426147460938 PEAK HCD FTMS 0 0 0 1567 3826.103515625 0.4803546988736474 15 -0.1551074981689453 3 Unmodified _MMMNMLMGNAS_ REV__ENSG00000132017|ENST00000254337|DCAF15 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84050 NaN 532 1036 1567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1572 20.295 NaN 14345 35 0 5396.8 0.327 + -1 LPCWTQLTM 9 13 583.2725379263916 NaN 0 583.2728881835938 PEAK HCD FTMS 0 0 0 1571 1952.509765625 0.2772007489551438 -12 0.12316322326660156 1 Carbamidomethyl (C),Oxidation (M) _LPC(Carbamidomethyl (C))WTQLTM(Oxidation (M))_ REV__ENST00000347739.3_1_8:22880431-22880479:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74724.5 NaN 533 1037 1571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1573 20.299 NaN 34221 35 0 8627.6 0.261 + 34023 YMPALARFR 9 12 562.8070222997145 NaN 0 562.8076782226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YMPALARFR_ REV__ENSG00000124209|ENST00000244040|RAB22A;REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86306.2 NaN 534 1037 1571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1575 20.305 NaN 46196 35 0 5765.7 0.327 -1 FVEDIMTM 8 32 509.2186815567381 NaN 0 509.2187194824219 PEAK HCD FTMS 0 0 0 1574 9010.515625 0.5930263692877759 -3 0.0333251953125 1 2 Oxidation (M) _FVEDIM(Oxidation (M))TM(Oxidation (M))_ ENSG00000214413|ENST00000448814|BBIP1;ENST00000605265.1_1_10:112660120-112660297:-|nuORF;nc|ENSG00000214413|A8MTZ0-2|BBIP1;nc|ENSG00000214413|A8MTZ0-3|BBIP1 5.230669730166228 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85926.4 NaN 535 1038 1574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1576 20.309 NaN 31671 35 0 3219 0.261 -1 NAESGRGQVM 10 28 532.7431441510945 1063.471735368989 2 532.7429809570312 MULTI HCD FTMS 0 0 0 1574 11123.1630859375 0.5724054123758486 -2 0.023412704467773438 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.189502756095605 0.45312800054222196 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9718 0 0 799.3559437482437 0 799.3559437482437 0 10 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.9718 + + 4 NaN NaN 79891.1 NaN 536 1038 1574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1577 20.313 NaN 17183 35 0 5828.9 0.261 + 28086 THGRYHRQGG 10 14 584.789411273338 NaN 0 584.7890014648438 PEAK HCD FTMS 0 0 0 1574 6472.37841796875 0.5901561416449786 73 -0.6774406433105469 3 Unmodified _THGRYHRQGG_ REV__EML3-INTS5|1|fusion;REV__ENSG00000149499|ENST00000394773|EML3;REV__nc|ENSG00000149499|Q32P44-2|EML3 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94955.1 NaN 537 1038 1574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1578 20.316 NaN 45985 35 0 11036 0.261 + 3701 ELSSSSEQR 9 23 511.7411767953013 1021.4678006574027 2 511.7413635253906 MULTI HCD FTMS 0 0 0 1574 7195.94287109375 0.0780738162257592 -14 0.14986801147460938 4 Unmodified _ELSSSSEQR_ REV__ENSG00000160218|ENST00000291574|TRAPPC10;REV__PWP2-TRAPPC10|1|fusion 1.6526216038709556 0.33848895094777925 1 TQ 2 -1 7.4743 0 0 0.73172 0 0 329.1592201904089 460.1844576471313 789.3436778375402 0 0 0 0 0 0 0 0 0 TQ 0.73172 - 9 + NaN NaN 82650.8 NaN 538 1038 1574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1580 20.321 NaN 43074 35 0 5195.1 0.411 -1 TPNEERNVM 9 27 553.2508175835768 1104.4870822339535 2 553.25048828125 MULTI HCD FTMS 0 0 0 1579 13407.47265625 0.16263023209842287 18 -0.17990875244140625 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 4.897010918128616 0.31389406404703984 1 TP 2 -1 19.464 0 0 1.7623 0 0 0 903.3698824518186 903.3698824518186 12.474250108400469 0 0 0 0 0 0 0 0 TP 1.7623 + + 3 + NaN NaN 94304.2 NaN 539 1039 1579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1582 20.33 NaN 20809 35 0 5124.5 0.327 -1 RMYTHCAL 8 13 526.2451840570052 NaN 0 526.24560546875 PEAK HCD FTMS 0 0 0 1581 5145.52685546875 0.4827597501716086 -4 0.04821205139160156 1 Carbamidomethyl (C) _RMYTHC(Carbamidomethyl (C))AL_ ENST00000590769.5_1_16:4927025-4930248:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84231.5 NaN 540 1040 1581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1583 20.334 NaN 12114 35 0 4483.3 0.261 -1 LVFQHCVRKP 10 11 642.3570556640625 NaN 0 642.3570556640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _LVFQHC(Carbamidomethyl (C))VRKP_ ENST00000431388.2_1_17:79214997-79215036:+|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84262.9 NaN 541 1040 1581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1585 20.339 NaN 135990 35 0 17054 0.327 + 19379 NPEHASVAM 9 36 486.21624981001764 970.4179466868353 2 486.2159118652344 MULTI HCD FTMS 0 0 0 1584 105875.859375 0.3123666021962476 13 -0.13029861450195312 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 43.85829265575387 0.04763305254408404 1 TAV{[WN]|[YH]}VA{M(Oxidation (M))|F} 8 5 48.889 0 0 5.0379 0 0 63.99820054676463 0 63.99820054676463 0 43.31546893236258 0 0 0 0 0 0.3494850021680094 0.4247425010840047 TAV{[WN]|[YH]}VA{M(Oxidation (M))|F} 5.0379 - 66 + NaN NaN 115970.3 NaN 542 1041 1584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1586 20.344 NaN 69417 35 0 11112 0.261 -1 SESAQSKML 9 24 498.73702186417796 995.459490795156 2 498.73681640625 MULTI HCD FTMS 0 0 0 1584 61940.35546875 0.24692559417157883 15 -0.15352249145507812 2 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 26.020703789607367 0.13554323117744113 1 K{M(Oxidation (M))|F}{I|L} 3 -1 29.693 0 0 2.9828 0 0 589.2330189435562 0 589.2330189435562 0 9.911356165197844 0 0 0 0.5 0 0 0 K{M(Oxidation (M))|F}{I|L} 2.9828 + + 21 NaN NaN 91325.4 NaN 543 1041 1584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1588 20.349 NaN 75429 35 0 8170.8 0.411 -1 HPESERISM 9 39 551.2533201502873 1100.4920873673746 2 551.2534790039062 MULTI HCD FTMS 0 0 0 1587 17983.681640625 0.30736851627884154 57 -0.5211105346679688 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3161715143186 734.3161715143186 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 100927.1 NaN 544 1042 1587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1590 20.358 NaN 561290 35 0 96515 0.327 + 2977 EAAGEVRAM 9 69 475.22408843593456 948.4336239386691 2 475.2237854003906 MULTI HCD FTMS 0 0 0 1589 309213.78125 0.6492033729986894 -5 0.05276679992675781 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 106.94017166704063 0.003441928997083001 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 68.554 0 0 7.2282 7.2282 88.164 0 0 0 7.147642715192504 8.081597033474424 7.147642715192504 6.210149894766701 0 1.9960762528683702 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}A{[RE]|[WV]}[VG]A{M(Oxidation (M))|F};{[DA]|[EG]}V[RD][VG]A{M(Oxidation (M))|F} 7.2282;6.5734;6.3761;6.2656;5.2242;4.9862;4.8757;4.2492;3.7479;3.2244 +;-;-;-;-;-;-;-;-;- + 543 + NaN NaN 163531.2 NaN 545 1043 1589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1591 20.362 NaN 48157 35 0 11617 0.261 -1 EVLLPWIM 8 30 508.7777663991591 1015.5409798651182 2 508.7779235839844 MULTI HCD FTMS 0 0 0 1589 12592.3935546875 0.5368491106646138 -2 0.018009185791015625 2 Oxidation (M) _EVLLPWIM(Oxidation (M))_ ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;nc|ENSG00000177119|Q4KMQ2-3|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4381 0 0 850.4945148766401 0 850.4945148766401 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4381 + + 1 + NaN NaN 90131.9 NaN 546 1043 1589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1594 20.381 NaN 24649 35 0 4430.5 0.327 -1 0 16 553.2508175835768 1104.4870822339535 2 553.2506713867188 MULTI HCD FTMS 0 0 0 1593 8506.94140625 0.10318766935550665 24 -0.22209548950195312 1 NaN NaN 1 M 1 -1 5.4846 0 0 0.49657 0 0 823.5042158782879 146.9215029352172 970.4257188135051 0 0 0 0 0 0 0 0 0 M 0.49657 - 1 + NaN NaN 85259.3 NaN 547 1045 1593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1595 20.385 NaN 54624 35 0 9544.9 0.262 + -1 DLRHGETS 8 26 478.7252409096106 955.4359288860212 2 478.724853515625 MULTI HCD FTMS 0 0 0 1593 20451.267578125 0.15933935785763204 13 -0.1284656524658203 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DLRHGETS_ REV__ENST00000498488.5_1_1:24717891-24727878:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 96459.5 NaN 548 1045 1593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1597 20.391 NaN 8387.2 35 0 2329 0.411 + -1 TMTSLCDTTNE 11 13 644.7549320401424 NaN 0 644.7554931640625 PEAK HCD FTMS 0 0 0 1596 1821.7955322265625 0.4418539454581693 1 -0.008052825927734375 1 Carbamidomethyl (C),Oxidation (M) _TM(Oxidation (M))TSLC(Carbamidomethyl (C))DTTNE_ REV__ENSG00000197872|ENST00000381323|CYRIA;REV__ENST00000469507.1_1_2:16742256-16742729:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83242.6 NaN 549 1046 1596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1599 20.399 NaN 26460 35 0 5019.4 0.327 + -1 MQPKYVVF 8 15 514.267895111879 1026.521237290558 2 514.2692260742188 MULTI HCD FTMS 0 0 0 1598 6285.65380859375 0.1608231750738014 20 -0.1885700225830078 1 Oxidation (M) _M(Oxidation (M))QPKYVVF_ REV__ENSG00000121797|ENST00000399036|CCRL2;REV__nc|ENSG00000121797|O00421-2|CCRL2 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85926 NaN 550 1047 1598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1600 20.403 NaN 31434 35 0 5780.8 0.261 + -1 LRCLTCMY 8 16 530.2421248279321 NaN 0 530.2413330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _LRCLTC(Carbamidomethyl (C))MY_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|2;REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|2;REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|2;REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|2;REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|170|1|anti-sense;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|211|2|anti-sense;REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|231|2|anti-sense 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91818.5 NaN 551 1047 1598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1601 20.407 NaN 26829 35 0 5132.6 0.261 + -1 RHHRCRCCHCC 11 16 566.8885067329729 NaN 0 567.283447265625 PEAK HCD FTMS 0 0 0 1598 6780.7373046875 0.9542497214614263 19 -0.18102455139160156 3 5 Carbamidomethyl (C) _RHHRC(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))HC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000479196.1_1_2:73308605-73315425:-|nuORF 0 0.34212014346876374 1 K 1 -1 5.4846 0 0 0.4846 0 0 831.6280438841114 169.02146326236564 1000.649507146477 0 0 0 0 0 0 0 0 0 K 0.4846 - 1 + NaN NaN 90577.2 NaN 552 1047 1598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1603 20.412 NaN 18301 35 0 6162.9 0.411 -1 ACIMQMFFI 9 25 588.7671461589271 NaN 0 588.7678833007812 PEAK HCD FTMS 0 0 0 1602 5683.7705078125 0.5996167311354801 -8 0.08258247375488281 1 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))IM(Oxidation (M))QMFFI_ nc|ENSG00000290649|Q8NH63|OR51H1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92144.3 NaN 553 1048 1602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1605 20.42 NaN 22302 35 0 6049.6 0.411 + -1 VMYNPPPLCA 10 19 589.2742792621458 1176.5340055910915 2 589.273681640625 MULTI HCD FTMS 0 0 0 1604 1628.9931640625 0.12636218439167884 -4 0.03948974609375 1 Carbamidomethyl (C),Oxidation (M) _VM(Oxidation (M))YNPPPLC(Carbamidomethyl (C))A_ REV__CON__P06868 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87612.6 NaN 554 1049 1604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1607 20.428 NaN 17518 35 0 2260.2 0.411 -1 ASWIMALTCP 10 32 583.2725379263916 NaN 0 583.2730712890625 PEAK HCD FTMS 0 0 0 1606 5146.92626953125 0.7307168659790384 1 -0.008052825927734375 1 Carbamidomethyl (C),Oxidation (M) _ASWIM(Oxidation (M))ALTC(Carbamidomethyl (C))P_ ENST00000530867.1_1_11:9199613-9200479:-|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77858.3 NaN 555 1050 1606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1609 20.436 NaN 157730 35 0 21106 0.327 -1 0 35 511.7411767953013 1021.4678006574027 2 511.7409362792969 MULTI HCD FTMS 0 0 0 1608 71614.2734375 0.7769933313340502 -1 0.008052825927734375 1 NaN NaN 1 {[ES]|[DT]|[{I|L}C]}{I|L}T{[CA]|SS}D{[{M(Oxidation (M))|F}H]|[RQ]} 9 -1 + 35.013 0 0 3.4277 3.4277 88.388 0 0 0 16.952848285818888 10.40021770435246 10.40021770435246 35.01255460594456 0 0.7134679910804405 0 0.3252574989159953 0.3252574989159953 {[ES]|[DT]|[{I|L}C]}{I|L}T{[CA]|SS}D{[{M(Oxidation (M))|F}H]|[RQ]} 3.4277 - 86 + NaN NaN 116943.5 NaN 556 1051 1608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1610 20.441 NaN 29104 35 0 4340.1 0.261 -1 NAESGRGQVM 10 20 532.7431441510945 1063.471735368989 2 532.7431030273438 MULTI HCD FTMS 0 0 0 1608 14519.3935546875 0.7471777039415455 11 -0.10846519470214844 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.897010918128616 0.4493830473644964 1 {[QG]|[NA]}E 3 -1 7.4473 0 0 0.70028 0 0 0 746.3237398736936 746.3237398736936 5.853481135844875 0 0 0 0 0 0 0 0 {[QG]|[NA]}E 0.70028 + + 5 + NaN NaN 85641.2 NaN 557 1051 1608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1611 20.444 NaN 37858 35 0 11807 0.261 + 22196 QLLPHQELF 9 24 562.8070222997145 NaN 0 562.8078002929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _QLLPHQELF_ REV__ENSG00000105173|ENST00000262643|CCNE1;REV__nc|ENSG00000105173|P24864-2|CCNE1;REV__nc|ENSG00000105173|P24864-3|CCNE1 0.5247636613948944 0.2927039108006614 1 G 1 -1 3.9794 0 0 0.35417 0 0 561.833574773454 501.7296541803344 1063.5632289537884 0 0 0 0 0 0 0 0 0 G 0.35417 - 1 + NaN NaN 87947.6 NaN 558 1051 1608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1613 20.45 NaN 15758 35 0 6663.7 0.327 + 35023 YTGARHGRGGH 11 10 584.7895347612957 NaN 0 584.7896118164062 PEAK HCD FTMS 0 0 0 1612 1971.207275390625 0.21247796683854595 -44 0.44927978515625 1 Unmodified _YTGARHGRGGH_ ENST00000294309.7_2_11:68855463-68855787:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92313.7 NaN 559 1052 1612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1614 20.454 NaN 17445 35 0 4254.8 0.262 -1 CQVELNRKVL 10 17 629.8509521484375 NaN 0 629.8509521484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))QVELNRKVL_ ENSG00000242485|ENST00000344843|MRPL20 0.4007161486938917 0.3398413315442166 1 V 1 -1 5.4846 0 0 0.43642 0 0 877.1143311017594 277.50788294010005 1154.6222140418595 0 0 0 0 0 0 0 0 0 V 0.43642 + + 1 + NaN NaN 85032.2 NaN 560 1052 1612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1616 20.46 NaN 65942 35 0 5928.5 0.327 -1 NPEHASVAM 9 30 486.21624981001764 970.4179466868353 2 486.2159423828125 MULTI HCD FTMS 0 0 0 1615 34195.96875 0.10088870711701427 25 -0.22365188598632812 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 19.256988751693697 0.19398022840297344 1 VA{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.2454 0 0 635.2666538174979 0 635.2666538174979 0 41.197887582883936 0 0 0 1.5 0 0 0 VA{M(Oxidation (M))|F} 4.2454 + + 31 + NaN NaN 95469.5 NaN 561 1053 1615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1617 20.464 NaN 28672 35 0 11906 0.261 + 2746 DWHWFCVWWMH 11 13 544.8938927247668 NaN 0 545.2206420898438 PEAK HCD FTMS 0 0 0 1615 6231.12060546875 0.8070494210405624 25 -0.22365188598632812 2 Unmodified _DWHWFCVWWMH_ REV__ENSG00000182372|ENST00000331222|CLN8;REV__ENST00000523237.1_1_8:1721944-1728730:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83713.6 NaN 562 1053 1615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1619 20.47 NaN 43001 35 0 5779.9 0.327 -1 0 20 540.308463728001 1078.602374522802 2 540.3082885742188 MULTI HCD FTMS 0 0 0 1618 4161.59423828125 0.0828172678781121 23 -0.20631980895996094 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95938.4 NaN 563 1054 1618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1620 20.474 NaN 36224 35 0 8205.9 0.261 + 724 AQQQGLFME 9 27 526.2451840570052 NaN 0 526.2450561523438 PEAK HCD FTMS 0 0 0 1618 4580.06787109375 0.4297076826774825 10 -0.09019660949707031 2 Unmodified _AQQQGLFME_ ENST00000460369.3_2_1:43417536-43424401:-|nuORF 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90975.2 NaN 564 1054 1618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1622 20.48 NaN 543740 35 0 100760 0.327 + 2978 EAAGEVRAM 9 54 475.22408843593456 948.4336239386691 2 475.2237548828125 MULTI HCD FTMS 0 0 0 1621 335167.25 0.7036934393385643 7 -0.06514739990234375 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 125.52916310638031 0.0008761121089336018 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 75.043 0 0 7.9123 7.9123 86.502 0 0 0 0.5462187404089036 2.6811468478550893 0.5462187404089036 0.2731093702044518 0 3.274227503252014 0 2.9604093769761874 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}[RD]V[VG]A{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F} 7.9123;7.8835;7.8547;7.2004;7.1717;5.2019;5.0149;4.9862;4.4333;4.3031 +;-;-;-;-;-;-;-;-;- + 681 NaN NaN 180290.7 NaN 565 1055 1621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1623 20.484 NaN 32366 35 0 5365.5 0.261 -1 SESAQSKML 9 19 498.73702186417796 995.459490795156 2 498.7367858886719 MULTI HCD FTMS 0 0 0 1621 24847.2109375 0.09905355366170224 29 -0.2598094940185547 2 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 8.745405648335112 0.2847203663274469 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88799.4 NaN 566 1055 1621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1624 20.488 NaN 73039 35 0 11682 0.261 -1 HPESERISM 9 34 551.2533201502873 1100.4920873673746 2 551.2534790039062 MULTI HCD FTMS 0 0 0 1621 19289.400390625 0.3296852388991056 70 -0.6346950531005859 3 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 3.5964929083625545 0.32375295897743744 1 E{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.4046 0 0 737.3375111310562 0 737.3375111310562 0 15.45757490560675 0 0 0 0.5 0 0 0 E{[ES]|[DT]|[{I|L}C]} 1.4046 + + 3 NaN NaN 95554.2 NaN 567 1055 1621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1626 20.493 NaN 19467 35 0 5439.3 0.411 + 30780 VPRLWRARG 9 13 555.8355500613621 NaN 0 556.296630859375 PEAK HCD FTMS 0 0 0 1625 1893.140869140625 0.30395274328315947 -3 0.03318977355957031 1 Unmodified _VPRLWRARG_ REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84024.5 NaN 568 1056 1625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1628 20.501 NaN 41472 35 0 5636.4 0.411 -1 HQWPMTAM 8 38 509.2186815567381 NaN 0 509.21868896484375 PEAK HCD FTMS 0 0 0 1627 11269.15234375 0.7416783653116291 16 -0.14391136169433594 1 Oxidation (M) _HQWPMTAM(Oxidation (M))_ OR5B12|p.F111Sfs*24|1|0.21|ENSG00000172362|chr11:58439820-58439820|A/-|frameshift_variant 12.531546534597751 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85346.1 NaN 569 1057 1627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1633 20.532 NaN 29246 35 0 5514.7 0.327 -1 MEMFTFLL 8 15 553.2508175835768 1104.4870822339535 2 553.2507934570312 MULTI HCD FTMS 0 0 0 1632 1657.8056640625 0.020108884562586367 40 -0.3688220977783203 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))EM(Oxidation (M))FTFLL_ ENSG00000164930|ENST00000358755|FZD6 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87528.6 NaN 570 1061 1632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1634 20.536 NaN 30926 35 0 4455.2 0.261 + 5117 FEQICLFMF 9 23 589.2742792621458 1176.5340055910915 2 589.274658203125 MULTI HCD FTMS 0 0 0 1632 7103.3212890625 0.5510097981524834 8 -0.07131767272949219 2 Unmodified _FEQICLFMF_ ENST00000374794.7_2_10:34759149-34806035:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95105 NaN 571 1061 1632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1635 20.539 NaN 40924 35 0 7819.9 0.262 -1 0 28 478.7252409096106 955.4359288860212 2 478.7252502441406 MULTI HCD FTMS 0 0 0 1632 14117.025390625 0.10998818298226491 29 -0.2639732360839844 3 NaN NaN 1 G 1 -1 4.6041 0 0 0.48188 0 0 494.74212503035557 400.64374719791255 895.3858722282681 0 0 0 0 0 0 0 0 0 G 0.48188 - 2 + NaN NaN 86773.4 NaN 572 1061 1632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1639 20.56 NaN 46519 35 0 5463.2 0.327 -1 0 28 511.7411767953013 1021.4678006574027 2 511.7409973144531 MULTI HCD FTMS 0 0 0 1638 20218.228515625 0.21936169947655287 12 -0.1080474853515625 1 NaN NaN 1 T 1 -1 6.9897 0 0 0.68428 0 0 329.15879294431517 588.2394100688824 917.3982030131976 0 0 0 0 0 0 0 0 0 T 0.68428 - 10 + NaN NaN 88317.3 NaN 573 1064 1638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1640 20.564 NaN 17797 35 0 5539.8 0.261 + -1 YLCTVSDTMK 10 12 588.7671461589271 NaN 0 588.7660522460938 PEAK HCD FTMS 0 0 0 1638 4541.68212890625 0.47913063841124226 8 -0.07524871826171875 2 Oxidation (M) _YLCTVSDTM(Oxidation (M))K_ REV__ENSG00000188906|ENST00000298910|LRRK2;REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF;REV__LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89214.6 NaN 574 1064 1638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1642 20.57 NaN 35089 35 0 4918 0.327 + -1 KLSFEMFM 8 22 532.7431441510945 1063.471735368989 2 532.7430419921875 MULTI HCD FTMS 0 0 0 1641 12302.751953125 0.6331078444754057 25 -0.2256908416748047 1 2 Oxidation (M) _KLSFEM(Oxidation (M))FM(Oxidation (M))_ REV__MCM8|p.L382F|1|0.12|ENSG00000125885|chr20:5967948-5967948|G/C|missense_variant 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84122.7 NaN 575 1065 1641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1643 20.574 NaN 33719 35 0 8536.7 0.261 + -1 MPFDELHMPCE 11 12 479.8551442567089 NaN 0 479.85504150390625 PEAK HCD FTMS 0 0 0 1641 3838.22509765625 0.37895164882631643 -21 0.20244979858398438 2 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))PFDELHM(Oxidation (M))PC(Carbamidomethyl (C))E_ REV__ENSG00000011677|ENST00000370314|GABRA3;REV__ENSG00000022355|ENST00000393943|GABRA1;REV__ENSG00000151834|ENST00000381620|GABRA2;REV__GABRA2|p.T393Nfs*14|1|0.16|ENSG00000151834|chr4:46250486-46250487|-/T|frameshift_variant;REV__nc|ENSG00000151834|P47869-2|GABRA2 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77254.8 NaN 576 1065 1641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1646 20.587 NaN 91537 35 0 12187 0.412 + 3125 EANQAINPK 9 44 492.7591582728416 983.5037636124832 2 492.7591247558594 MULTI HCD FTMS 0 0 0 1645 33340.77734375 0.38287608099466225 -8 0.07054519653320312 1 Unmodified _EANQAINPK_ ENSG00000100201|ENST00000403230|DDX17;ENSG00000108654|ENST00000225792|DDX5;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000108654|P17844-2|DDX5 27.628801355627647 0.12213550946336599 1 A{I|L}N[KP] 5 4 25.758 0 0 2.619 0 0 442.1818137167 0 442.1818137167 0 5.962790416161781 0 0 0 0.805462187404089 0 0 0 + A{I|L}N[KP] 2.619 + + 52 + NaN NaN 122124 NaN 577 1067 1645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1649 20.603 NaN 178690 35 0 29896 0.327 + 2979 EAAGEVRAM 9 41 475.22408843593456 948.4336239386691 2 475.22381591796875 MULTI HCD FTMS 0 0 0 1648 85645.3046875 0.17981482086554143 21 -0.1926555633544922 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 66.45667989310934 0.010234776021261575 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 65.653 0 0 6.9223 6.9223 90.465 0 0 0 37.23705952196511 14.973024840566467 14.973024840566467 9.532796692927263 0 1.4049471895720984 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}V[RD][VG]A{M(Oxidation (M))|F} 6.9223;5.9172;4.6635;3.9805;3.5117;3.5075;2.8245;2.7706;1.614 +;-;-;-;-;-;-;-;- + 159 + NaN NaN 109486.9 NaN 578 1069 1648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1650 20.607 NaN 50102 35 0 5522.7 0.261 -1 SESAQSKML 9 30 498.7371095332651 995.4596661333302 2 498.7369079589844 MULTI HCD FTMS 0 0 0 1648 38495.921875 0.26326447482897214 -31 0.29819488525390625 2 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 18.373094154950223 0.20161688160436167 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6088 0 0 717.3295765607437 0 717.3295765607437 0 12.781512503836439 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6088 + + 25 NaN NaN 85255.7 NaN 579 1069 1648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1651 20.611 NaN 23305 35 0 4849.8 0.261 + -1 LMWQICSRC 9 22 606.7712907720381 NaN 0 606.7709350585938 PEAK HCD FTMS 0 0 0 1648 7647.7158203125 0.42378168854409787 -45 0.4480628967285156 3 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))WQIC(Carbamidomethyl (C))SRC_ REV__ENST00000496169.5_1_7:140156452-140158931:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86004.2 NaN 580 1069 1648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1652 20.614 NaN 36911 35 0 9732.2 0.261 -1 DSQERMFW 8 17 557.7325599261169 NaN 0 557.7326049804688 PEAK HCD FTMS 0 0 0 1648 4786.02978515625 0.6325001879408746 -1 0.007568359375 4 Oxidation (M) _DSQERM(Oxidation (M))FW_ ENSG00000173757|ENST00000293328|STAT5B 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109487 NaN 581 1069 1648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1654 20.62 NaN 57106 35 0 8776.4 0.411 -1 HPESERISM 9 42 551.2533201502873 1100.4920873673746 2 551.253173828125 MULTI HCD FTMS 0 0 0 1653 14760.1083984375 0.2522727386529142 85 -0.759521484375 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3145846002561 734.3145846002561 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 89525 NaN 582 1070 1653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1657 20.635 NaN 27203 35 0 4403.6 0.327 -1 WKMEFDTR 8 17 564.7609196286403 1127.5072863240805 2 564.7606811523438 MULTI HCD FTMS 0 0 0 1656 7445.44873046875 0.08050911218912689 -16 0.14222145080566406 1 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88664.8 NaN 583 1072 1656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1658 20.64 NaN 28092 35 0 9683.3 0.261 + 5604 FLSEYQHQ 8 14 526.2451840570052 NaN 0 526.2450561523438 PEAK HCD FTMS 0 0 0 1656 7880.650390625 0.7393724531287736 27 -0.235321044921875 2 Unmodified _FLSEYQHQ_ ENSG00000186834|ENST00000332499|HEXIM1;HEXIM1|p.E62Gfs*23|1|0.17|ENSG00000186834|chr17:45149373-45149376|GGAG/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80553.3 NaN 584 1072 1656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1662 20.66 NaN 82581 35 0 9844.5 0.411 + 129 AEDKENYKKF 10 55 424.5468142482109 1270.6186133448327 3 424.54693603515625 MULTI HCD FTMS 0 0 0 1661 29718.390625 0.7296867354046022 -9 0.08021163940429688 1 Unmodified _AEDKENYKKF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 22.65808497894818 0.29917593477267174 1 AEDK 4 6 56.459 0 0 4.4434 0 0 0 824.3903292291624 824.3903292291624 49.469034597845436 0 0 0 0 0.3807196863200844 1.5228787452803376 0.4247425010840047 0.4247425010840047 + AEDK 4.4434 + + 12 + NaN NaN 103279 NaN 585 1075 1661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1664 20.668 NaN 7994.8 35 0 1660.7 0.411 + 2331 DNEPYIFKVF 10 14 636.3172422123896 1270.619931491579 2 636.3167724609375 MULTI HCD FTMS 0 0 0 1663 4016.920166015625 0.5131103773426035 1 -0.008075714111328125 1 Unmodified _DNEPYIFKVF_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 0.776531954647913 0.4711933975711956 1 P 1 9 3.0989 0 0 0.24389 0 0 652.7835800284917 517.7508638971311 1170.5344439256228 0 0 0 0 0 0 0 0 0 + P 0.24389 + + 1 + NaN NaN 111361.4 NaN 586 1076 1663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1668 20.691 NaN 33681 35 0 4062.1 0.327 -1 NAESGRGQVM 10 29 532.7431441510945 1063.471735368989 2 532.7427978515625 MULTI HCD FTMS 0 0 0 1667 9543.578125 0.4911189137456874 39 -0.36890411376953125 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F} 1 -1 18.099 0 0 1.7019 0 0 898.4254077096124 0 898.4254077096124 0 18.098943791441968 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7019 + + 1 + NaN NaN 83793.4 NaN 587 1079 1667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1669 20.695 NaN 40755 35 0 10661 0.261 -1 0 27 511.7411767953013 1021.4678006574027 2 511.7412414550781 MULTI HCD FTMS 0 0 0 1667 6608.74267578125 0.07170287068633333 27 -0.24827957153320312 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95086.8 NaN 588 1079 1667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1671 20.701 NaN 21742 35 0 5764.3 0.411 -1 RCINCCLI 8 24 526.2453189409016 1050.476084948603 2 526.24462890625 MULTI HCD FTMS 0 0 0 1670 1998.853515625 0.32434178927971147 1 -0.0081024169921875 1 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))INC(Carbamidomethyl (C))CLI_ ENSG00000119729|ENST00000238738|RHOQ;ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF 0.7936320650641473 0.540814922690045 1 P 1 -1 2.2185 0 0 0.21119 0 0 524.6800166886406 425.7143648736938 950.3943815623345 0 0 0 0 0 0 0 0 0 P 0.21119 - 2 + NaN NaN 89940.5 NaN 589 1080 1670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1673 20.709 NaN 149470 35 0 20752 0.327 + 3126 EANQAINPK 9 42 492.7591582728416 983.5037636124832 2 492.7589416503906 MULTI HCD FTMS 0 0 0 1672 65373.61328125 0.7507321318732743 6 -0.06146240234375 1 Unmodified _EANQAINPK_ ENSG00000100201|ENST00000403230|DDX17;ENSG00000108654|ENST00000225792|DDX5;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000108654|P17844-2|DDX5 13.90604991867851 0.24021115267848145 1 A{I|L}N[KP] 5 4 26.466 0 0 2.691 0 0 442.1803399540642 0 442.1803399540642 0 -0.032059605518313106 -0.032059605518313106 0 0 0.4247425010840047 0 0 0 + A{I|L}N[KP] 2.691 + + 35 + NaN NaN 119987.6 NaN 590 1081 1672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1674 20.713 NaN 21783 35 0 6735.1 0.261 -1 RQVADQMWQ 9 15 589.2747802734375 NaN 0 589.2747802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _RQVADQM(Oxidation (M))WQ_ ENSG00000137207|ENST00000372422|YIPF3;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF;ENST00000510102.5_1_6:43481178-43483845:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85975 NaN 591 1081 1672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1677 20.726 NaN 120510 35 0 12371 0.327 + 25423 SESAQSKML 9 41 498.7371095332651 995.4596661333302 2 498.7369384765625 MULTI HCD FTMS 0 0 0 1676 95100.234375 0.6503679361191176 -17 0.14651107788085938 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 45.739877483867886 0.03899552410870734 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 {[ES]|[DT]|[{I|L}C]} + + 36.03 5.2288 2.4199 3.6195 3.6195 59.703 0 0 0 0 15.061216379505069 0 0 0 1.6237125054200234 0 0.3807196863200844 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 3.6195 + + 31 + NaN NaN 99134 NaN 592 1083 1676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1678 20.731 NaN 89782 35 0 16628 0.261 -1 EAAGEVRAM 9 28 475.22408843593456 948.4336239386691 2 475.223876953125 MULTI HCD FTMS 0 0 0 1676 44660.40625 0.0937658284821086 35 -0.3334236145019531 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 21.536976647645854 0.1742816388551942 1 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 41.761 0 0 4.4032 4.4032 82.01 0 0 0 16.35512976221092 7.147642715192504 7.147642715192504 3.4678748622465605 0 0.28872548999643577 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]} 4.4032;4.0375 +;- + 66 + NaN NaN 96015.5 NaN 593 1083 1676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1679 20.734 NaN 58380 35 0 11407 0.261 -1 FILVCIESVF 10 30 409.5543688256589 1225.6412770771767 3 409.5541076660156 MULTI HCD FTMS 0 0 0 1676 13705.7998046875 0.6621211803837516 -7 0.05831146240234375 3 Carbamidomethyl (C) _FILVC(Carbamidomethyl (C))IESVF_ ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;ENSG00000078295|ENST00000338316|ADCY2 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94750.3 NaN 594 1083 1676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1682 20.747 NaN 56776 35 0 7625.5 0.327 + -1 HPMNSDKEK 9 28 551.2533201502873 1100.4920873673746 2 551.2533569335938 MULTI HCD FTMS 0 0 0 1681 15093.908203125 0.257977885838638 100 -0.9441604614257812 1 Oxidation (M) _HPM(Oxidation (M))NSDKEK_ REV__ENSG00000114107|ENST00000264982|CEP70;REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70;REV__nc|ENSG00000114107|Q8NHQ1-4|CEP70;REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70 1.844237919475145 0.33703635659052655 1 N 1 -1 2.4743 0 0 0.22483 0 0 567.6458482089746 415.7884920709594 983.4343402799341 0 0 0 0 0 0 0 0 0 N 0.22483 + + 2 + NaN NaN 85299.3 NaN 595 1085 1681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1683 20.752 NaN 15869 35 0 4362.9 0.261 + -1 PPVVKVDETQC 11 16 636.3172422123896 1270.619931491579 2 636.8186645507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _PPVVKVDETQC(Carbamidomethyl (C))_ REV__ENSG00000135540|ENST00000343505|NHSL1;REV__nc|ENSG00000135540|Q5SYE7|NHSL1 0.9622753412299311 0.4147004537482263 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87714.9 NaN 596 1085 1681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1685 20.757 NaN 171190 35 0 39957 0.327 -1 HPYQPDPKM 9 35 564.7609196286403 1127.5072863240805 2 564.7607421875 MULTI HCD FTMS 0 0 0 1684 78262.703125 0.8462701140268637 -2 0.017526626586914062 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 16.149105407346934 0.22083165093524068 1 HPR 3 -1 34.693 0 0 3.0769 0 0 0 734.2909532465468 734.2909532465468 24.235162698957282 0 0 0 0 1 0 0 0 HPR 3.0769 - 10 + NaN NaN 106921.6 NaN 597 1086 1684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1686 20.761 NaN 91705 35 0 10410 0.261 + -1 MSLTSTMSI 9 28 493.7306541107085 985.446755288217 2 493.7303771972656 MULTI HCD FTMS 0 0 0 1684 58285.984375 0.8997042131016321 -3 0.030736923217773438 2 Oxidation (M) _MSLTSTM(Oxidation (M))SI_ REV__ENST00000560350.5_1_15:63881073-63881223:-|nuORF 10.823927491677226 0.26684000660059787 1 S{I|L} 2 -1 27.959 0 0 2.8372 0 0 767.319794973678 0 767.319794973678 0 16.787887749990347 0 0 0 0.5 0 0.5 0 S{I|L} 2.8372 + + 27 NaN NaN 90313.6 NaN 598 1086 1684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1687 20.765 NaN 41047 35 0 7677.4 0.261 + 35227 YVMPVFVLF 9 25 557.8040109877379 1113.5934690422757 2 557.804931640625 MULTI HCD FTMS 0 0 0 1684 4107.53564453125 0.09036266737362145 -13 0.11195564270019531 3 Unmodified _YVMPVFVLF_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 96789.8 NaN 599 1086 1684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1690 20.778 NaN 64604 35 0 7809.9 0.327 -1 MTKMVLQM 8 28 507.24515515062654 1012.4757573680531 2 507.2450866699219 MULTI HCD FTMS 0 0 0 1689 16942.900390625 0.5122209486388194 -9 0.08723831176757812 1 2 Oxidation (M) _M(Oxidation (M))TKM(Oxidation (M))VLQM_ ENST00000420851.6_1_3:195435625-195438442:+|nuORF 7.910154910731844 0.5302565402355366 1 QM 2 -1 20.969 0 0 2.0711 0 0 735.3672300930156 0 735.3672300930156 0 13.979400086720375 0 0 0 0 0 0 0 QM 2.0711 + + 4 NaN NaN 97330.7 NaN 600 1088 1689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1691 20.782 NaN 37001 35 0 11009 0.261 + 12029 KHRFGGLFP 9 23 529.7984592824953 NaN 0 529.7216796875 PEAK HCD FTMS 0 0 0 1689 2127.83154296875 0.5716177765325258 -3 0.030950546264648438 2 Unmodified _KHRFGGLFP_ REV__ENSG00000164675|ENST00000324698|IQUB;REV__IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant;REV__nc|ENSG00000164675|Q8NA54-2|IQUB 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94644 NaN 601 1088 1689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1694 20.796 NaN 63831 35 0 7756.5 0.327 + 3170 EAVNYLLSHPE 11 30 424.5468142482109 1270.6186133448327 3 424.54693603515625 MULTI HCD FTMS 0 0 0 1693 27953.09375 0.6863427424544895 6 -0.04895782470703125 1 Unmodified _EAVNYLLSHPE_ ENSG00000184227|ENST00000311148|ACOT1 2.498486711656943 0.4079631525365919 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85672.1 NaN 602 1090 1693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1695 20.8 NaN 87454 35 0 25794 0.261 -1 DECLKLRWV 9 31 406.88175714984214 NaN 0 406.85809326171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _DEC(Carbamidomethyl (C))LKLRWV_ ENSG00000052841|ENST00000039989|TTC17 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91398.9 NaN 603 1090 1693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1697 20.805 NaN 10052 35 0 2243.7 0.411 -1 HDECTPQQTM 10 15 624.2362934818265 NaN 0 624.2364501953125 PEAK HCD FTMS 0 0 0 1696 4214.3037109375 0.5104343742829228 -4 0.03516578674316406 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84753 NaN 604 1091 1696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1699 20.814 NaN 19867 35 0 4859.2 0.411 + -1 QKQMKQLF 8 14 554.7964654631253 NaN 0 554.7970581054688 PEAK HCD FTMS 0 0 0 1698 7574.97314453125 0.8283220002133603 -6 0.05645751953125 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))QKQM(Oxidation (M))KQLF_ REV__DDX10|p.R509H|1|0.27|ENSG00000178105|chr11:108723023-108723023|G/A|missense_variant;REV__DDX10|p.V677*|1|0.3|ENSG00000178105|chr11:108838502-108838502|A/-|frameshift_variant;REV__ENSG00000178105|ENST00000322536|DDX10 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84448.5 NaN 605 1092 1698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1703 20.836 NaN 22037 35 0 5555.8 0.411 + 21294 PRWISMHR 8 20 541.7886660485955 NaN 0 541.7880859375 PEAK HCD FTMS 0 0 0 1702 1972.8623046875 0.3115582996553939 -1 0.0073833465576171875 1 Unmodified _PRWISMHR_ ENST00000366628.9_1_1:233119139-233119391:+|nuORF 2.302733041254933 0.38822285293237185 1 {I|L} 1 7 0.088644 0 0 0.0081959 0 0 529.2480341462159 436.20563684635005 965.453670992566 0 0 0 0 0 0 0 0 0 + {I|L} 0.0081959 + + 1 + NaN NaN 99438.1 NaN 606 1095 1702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1705 20.845 NaN 178440 35 0 19356 0.411 + 25424 SESAQSKML 9 55 498.7371095332651 995.4596661333302 2 498.73687744140625 MULTI HCD FTMS 0 0 0 1704 117157.8984375 0.8012150664781162 -4 0.031002044677734375 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 100.0907132914201 0.004261551473353346 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 79.063 0 0 7.9424 7.9424 88.556 0 0 0 4.515449934959719 7.5996808788509185 4.515449934959719 4.515449934959719 0 2.8182503180159344 0 2.1549471895720984 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L} 7.9424;7.4888 +;- + 139 NaN NaN 131287.8 NaN 607 1096 1704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1707 20.853 NaN 71163 35 0 9759.2 0.411 -1 EAAGEVRAM 9 39 475.22408843593456 948.4336239386691 2 475.2236633300781 MULTI HCD FTMS 0 0 0 1706 27719.013671875 0.05819687951562811 49 -0.45214080810546875 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 27.628801355627647 0.12213550946336599 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 -1 + 47.98 0 0 5.0589 5.0589 83.092 0 0 0 25.76139358295287 13.46787486224656 13.46787486224656 3.4678748622465605 0 0.23965182871044374 0 0 0 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F} 5.0589;4.6932 +;- + 92 + NaN NaN 101064.7 NaN 608 1097 1706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1709 20.861 NaN 28534 35 0 5061.6 0.327 -1 NAESGRGQVM 10 22 532.7432010836905 1063.4718492341808 2 532.7429809570312 MULTI HCD FTMS 0 0 0 1708 12765.689453125 0.7121943932191067 -6 0.04706382751464844 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.498486711656943 0.462078817294651 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9718 0 0 799.3556996076187 0 799.3556996076187 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.9718 + + 1 NaN NaN 83398.9 NaN 609 1098 1708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1710 20.865 NaN 31581 35 0 10956 0.261 + 14192 LAMHSWRW 8 11 543.7693252638555 NaN 0 543.7689208984375 PEAK HCD FTMS 0 0 0 1708 10836.5283203125 0.8830256877552357 -1 0.008062362670898438 2 Unmodified _LAMHSWRW_ ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7;nc|ENSG00000131269|O75027-3|ABCB7 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77843.1 NaN 610 1098 1708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1712 20.871 NaN 44744 35 0 8445.6 0.327 + 12344 KNCEREPEP 9 18 551.2533201502873 1100.4920873673746 2 551.2536010742188 MULTI HCD FTMS 0 0 0 1711 7861.2158203125 0.13436015445129032 114 -1.1178112030029297 1 Unmodified _KNCEREPEP_ REV__ENST00000461762.5_1_9:132591268-132595829:-|nuORF;REV__ENST00000480023.1_1_9:132591268-132591846:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103028.1 NaN 611 1099 1711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1713 20.875 NaN 21729 35 0 4813.9 0.261 -1 VTMQLQDTPE 10 18 589.2737426757812 NaN 0 589.2737426757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _VTM(Oxidation (M))QLQDTPE_ ENSG00000136928|ENST00000259455|GABBR2;TBC1D2-GABBR2|1|fusion 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83272.9 NaN 612 1099 1711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1715 20.881 NaN 95649 35 0 21437 0.327 -1 HPYQPDPKM 9 24 564.7609196286403 1127.5072863240805 2 564.7605590820312 MULTI HCD FTMS 0 0 0 1714 37784.91796875 0.4085758038134433 12 -0.10963630676269531 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 13.042465956692817 0.2476723265019929 1 HPR 3 -1 34.693 0 0 3.0769 0 0 0 734.2908250418817 734.2908250418817 24.235162698957282 0 0 0 0 1 0 0 0 HPR 3.0769 - 8 + NaN NaN 92372.4 NaN 613 1100 1714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1716 20.885 NaN 38493 35 0 5889.2 0.262 + -1 AHMKMHSI 8 24 493.7306541107085 985.446755288217 2 493.7301330566406 MULTI HCD FTMS 0 0 0 1714 26975.732421875 0.4163982194298015 11 -0.10162925720214844 2 2 Oxidation (M) _AHM(Oxidation (M))KM(Oxidation (M))HSI_ REV__ENSG00000177374|ENST00000619757|HIC1;REV__nc|ENSG00000177374|Q14526|HIC1 7.289230182591677 0.5311777711368266 1 S{I|L} 2 -1 25.217 0 0 2.5589 0 0 767.320116111525 0 767.320116111525 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 S{I|L} 2.5589 + + 4 NaN NaN 82901.1 NaN 614 1100 1714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1717 20.888 NaN 27578 35 0 5817.6 0.261 + -1 FCFTCQEPE 9 17 580.7227063593174 NaN 0 580.7234497070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FC(Carbamidomethyl (C))FTCQEPE_ REV__ENSG00000172046|ENST00000417901|USP19;REV__nc|ENSG00000172046|O94966-2|USP19;REV__nc|ENSG00000172046|O94966-3|USP19;REV__nc|ENSG00000172046|O94966-4|USP19;REV__nc|ENSG00000172046|O94966-5|USP19;REV__nc|ENSG00000172046|O94966-7|USP19;REV__nc|ENSG00000172046|O94966|USP19 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93891.1 NaN 615 1100 1714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1718 20.892 NaN 28112 35 0 5570.5 0.261 + 10878 IVYMVTLW 8 25 512.7807044411392 1023.5468559490783 2 513.2825317382812 MULTI HCD FTMS 0 0 0 1714 3722.298583984375 0.5948194162594186 1 -0.019887924194335938 4 Unmodified _IVYMVTLW_ REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF 0.6903765706972694 0.5409681170271811 1 V 1 -1 1.9897 0 0 0.19439 0 0 528.6682681578659 392.7984713190063 921.4667394768721 0 0 0 0 0 0 0 0 0 V 0.19439 + + 1 + NaN NaN 83067.8 NaN 616 1100 1714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1719 20.895 NaN 49580 35 0 9570.6 0.261 + 19316 NMWVSQRTA 9 27 546.7664461206593 1091.5183393081186 2 546.7659912109375 MULTI HCD FTMS 0 0 0 1714 9701.078125 0.5521585305037464 -4 0.03600311279296875 5 Unmodified _NMWVSQRTA_ ENSG00000074416|ENST00000265052|MGLL;nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL 1.4819007175156935 0.3397831423917744 1 H 1 9 3.9794 0 0 0.36457 0 0 393.1699028840936 558.2668551080686 951.4367579921623 0 0 0 0 0 0 0 0 0 H 0.36457 - 1 + NaN NaN 95518 NaN 617 1100 1714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1721 20.901 NaN 55345 35 0 7198.6 0.411 + 31414 VYAQKHQQL 9 40 557.8040109877379 1113.5934690422757 2 557.8040161132812 MULTI HCD FTMS 0 0 0 1720 29323.390625 0.6450923431039468 2 -0.015783309936523438 1 Unmodified _VYAQKHQQL_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 37.97399986684836 0.07464525285885698 1 VYAQK 5 4 59.196 0 0 5.3158 0 0 0 521.2478121393186 521.2478121393186 33.979400086720375 0 0 0 0 0.4247425010840047 2 0 0 + VYAQK 5.3158 + + 84 + NaN NaN 101097.6 NaN 618 1101 1720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1725 20.924 NaN 93952 35 0 6732.5 0.411 + 14134 LADKERVAA 9 55 486.77737151221424 971.5401900912285 2 486.777099609375 MULTI HCD FTMS 0 0 0 1724 47587.71484375 0.4903422841272447 -9 0.08711051940917969 1 Unmodified _LADKERVAA_ ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF 47.7319792270244 0.034743597693959835 1 [{I|L}A]DKERG{I|L}A 9 2 + 73.572 0 0 7.5727 7.5727 92.055 0 0 0 3.3501624482976666 54.53070327321406 3.3501624482976666 11.020599913279625 0 1.8494850021680094 1.5228787452803376 0.3807196863200844 0 [{I|L}A]DKERG{I|L}A;[{I|L}A]DEKRG{I|L}A;[{I|L}A]DK[RD]A{I|L}A;[{I|L}A]DKEAA[RV];[{I|L}A]DEKAA[RV];{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A]ERG{I|L}A;{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A]EAAA{I|L}A;{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A]E[VG]G{I|L}A;{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A][RD]A{I|L}A 7.5727;6.4384;5.9244;5.4432;4.3089;3.6117;3.155;2.6639;1.9635 -;-;-;-;-;-;-;-;- 242 NaN NaN 119495.1 NaN 619 1104 1724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1728 20.939 NaN 46911 35 0 11474 0.327 -1 0 18 611.1814863640133 610.1742098974132 1 612.182861328125 MULTI HCD FTMS 0 0 0 1727 24156.95703125 0.6253531412660118 -78 0.7367534637451172 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88290.5 NaN 620 1106 1727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1729 20.944 NaN 36257 35 0 8480.5 0.261 -1 QNCHCHHG 8 24 525.1924080899198 NaN 0 525.1924438476562 PEAK HCD FTMS 0 0 0 1727 5679.53515625 0.6029413045362391 6 -0.051036834716796875 2 2 Carbamidomethyl (C) _QNC(Carbamidomethyl (C))HC(Carbamidomethyl (C))HHG_ SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|70|3|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|53|1|anti-sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|79|3|anti-sense 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95030.8 NaN 621 1106 1727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1731 20.949 NaN 31617 35 0 6852.6 0.327 -1 0 19 483.7319210099363 965.4492890866726 2 483.7317810058594 MULTI HCD FTMS 0 0 0 1730 16711.146484375 0.17807176826884022 -21 0.19199180603027344 1 NaN NaN 1 AV{M(Oxidation (M))|F} 3 -1 31.427 0 0 3.2551 0 0 630.2954937759289 0 630.2954937759289 0 31.42667503568731 0 0 0 1 0 0 0 AV{M(Oxidation (M))|F} 3.2551 - 9 + NaN NaN 101614.9 NaN 622 1107 1730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1732 20.953 NaN 13277 35 0 2823.1 0.261 + 3303 EEGDNEEEEY 10 13 621.717013563938 1241.419474194676 2 621.7156372070312 MULTI HCD FTMS 0 0 0 1730 1510.16259765625 0.12935363188657348 -10 0.09653282165527344 2 Unmodified _EEGDNEEEEY_ ENSG00000080189|ENST00000372230|SLC35C2;ENST00000493599.1_1_20:44979035-44979263:-|nuORF;nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2 0.35063188157827746 0.47344775436540215 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81822 NaN 623 1107 1730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1735 20.967 NaN 177260 35 0 14457 0.411 + 25425 SESAQSKML 9 54 498.7371095332651 995.4596661333302 2 498.7369079589844 MULTI HCD FTMS 0 0 0 1734 117628.1640625 0.8044311014960007 9 -0.09318351745605469 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 121.5340881639634 0.001118397630175091 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 82.884 0 0 8.3262 8.3262 90.841 0 0 0 8.375620045835404 14.691964632593582 8.375620045835404 8.375620045835404 0 2.8182503180159344 0 2.360924374808178 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L} 8.3262;7.4848 +;- + 313 NaN NaN 137561.6 NaN 624 1109 1734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1738 20.982 NaN 52967 35 0 8024.7 0.411 + -1 CTMDSSRTV 9 33 508.21163813352297 NaN 0 508.2114562988281 PEAK HCD FTMS 0 0 0 1737 17293.599609375 0.7753768593391235 -122 1.1535205841064453 1 Oxidation (M) _CTM(Oxidation (M))DSSRTV_ REV__ENSG00000176542|ENST00000316407|USF3 2.0597508629832335 0.2852655770354268 1 D 1 -1 2.7642 0 0 0.27249 0 0 410.34178105044595 486.0242098443969 896.3659908948429 0 0 0 0 0 0 0 0 0 D 0.27249 + + 1 + NaN NaN 87736.2 NaN 625 1111 1737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1740 20.99 NaN 55270 35 0 7034.1 0.411 -1 EAAGEVRAM 9 41 475.22408843593456 948.4336239386691 2 475.2233581542969 MULTI HCD FTMS 0 0 0 1739 28018.890625 0.05882647994503432 64 -0.6079940795898438 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 17.11289562659939 0.2125047172822487 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 -1 + 42.573 0 0 4.4888 4.4888 82.137 0 0 0 23.364875295848435 11.962724883926654 11.962724883926654 3.4678748622465605 0 0 0 0 0 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F} 4.4888;4.1231 +;- + 68 + NaN NaN 106021.4 NaN 626 1112 1739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1742 20.998 NaN 44039 35 0 7618.8 0.327 -1 HPYQPDPKM 9 18 564.7609196286403 1127.5072863240805 2 564.7608032226562 MULTI HCD FTMS 0 0 0 1741 15127.2177734375 0.16357360273627977 25 -0.2321949005126953 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 7.289230182591677 0.29575926068275815 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 85479.9 NaN 627 1113 1741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1743 21.003 NaN 37737 35 0 11234 0.261 + 728 AQSSRPPSQP 10 19 527.7675209974478 1053.5204890616956 2 527.7676391601562 MULTI HCD FTMS 0 0 0 1741 12880.99609375 0.28759515613787395 -13 0.11768341064453125 2 Unmodified _AQSSRPPSQP_ ENSG00000139767|ENST00000267260|SRRM4 5.296884461304476 0.4472664531305844 1 QM 2 9 5.5732 0 0 0.52901 0 0 644.3241827646237 147.07142053775627 791.39560330238 0 0 0 0 0 0 0 0 0 QM 0.52901 - 7 + NaN NaN 90337.1 NaN 628 1113 1741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1744 21.006 NaN 13489 35 0 5407.9 0.261 -1 NSTCEDVDECA 11 12 621.717013563938 1241.419474194676 2 621.7161254882812 MULTI HCD FTMS 0 0 0 1741 8459.7333984375 0.7246221311389704 -4 0.031642913818359375 3 Carbamidomethyl (C) _NSTC(Carbamidomethyl (C))EDVDECA_ ENSG00000174837|ENST00000312053|ADGRE1;nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1 0.3070304955306653 0.41757413505135293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74604.1 NaN 629 1113 1741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1745 21.009 NaN 32486 35 0 5446.1 0.263 -1 KRPECYKMLRS 11 20 495.25445268465484 NaN 0 495.2540588378906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _KRPEC(Carbamidomethyl (C))YKM(Oxidation (M))LRS_ ENST00000335661.6_1_15:80263304-80263385:-|nuORF 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83509.8 NaN 630 1113 1741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1746 21.013 NaN 35657 35 0 9865.5 0.261 + -1 VQCNDDNLK 9 16 553.250717362552 1104.486881791904 2 553.2509155273438 MULTI HCD FTMS 0 0 0 1741 6836.03076171875 0.1806731951432817 -24 0.2102222442626953 5 Carbamidomethyl (C) _VQC(Carbamidomethyl (C))NDDNLK_ REV__ENSG00000174130|ENST00000508254|TLR6;REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81611.4 NaN 631 1113 1741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1748 21.018 NaN 22207 35 0 5092.9 0.412 + 16370 LSEMKFHM 8 25 511.74120755766177 NaN 0 511.74090576171875 PEAK HCD FTMS 0 0 0 1747 1508.245361328125 0.36987383653550193 2 -0.018184661865234375 1 Unmodified _LSEMKFHM_ REV__ENST00000338222.6_1_X:56592195-56592459:+|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89568.9 NaN 632 1114 1747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1750 21.026 NaN 34174 35 0 5599.3 0.327 -1 NAESGRGQVM 10 26 532.7432010836905 1063.4718492341808 2 532.7431640625 MULTI HCD FTMS 0 0 0 1749 14454.2724609375 0.8063999866627672 11 -0.09795570373535156 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.498486711656943 0.462078817294651 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9718 0 0 799.3575306623062 0 799.3575306623062 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.9718 + + 2 NaN NaN 82152.1 NaN 633 1115 1749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1751 21.031 NaN 42675 35 0 7473.9 0.261 + -1 RWGKGIDTC 9 29 546.7664461206593 1091.5183393081186 2 546.766357421875 MULTI HCD FTMS 0 0 0 1749 14686.4638671875 0.8359128957331863 11 -0.09795570373535156 2 Carbamidomethyl (C) _RWGKGIDTC(Carbamidomethyl (C))_ REV__nc|ENSG00000226777|Q9NZY2|FAM30A 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84992.4 NaN 634 1115 1749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1753 21.036 NaN 53290 35 0 10366 0.327 -1 RSEHDLTPM 9 27 551.2533201502873 1100.4920873673746 2 551.2536010742188 MULTI HCD FTMS 0 0 0 1752 7225.61083984375 0.12349669702971355 131 -1.3267173767089844 1 Oxidation (M) _RSEHDLTPM(Oxidation (M))_ ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENST00000532145.1_1_15:101605000-101609050:+|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85441.6 NaN 635 1116 1752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1754 21.041 NaN 31401 35 0 5715.6 0.261 + 17808 MFPLAILYF 9 19 557.8040109877379 1113.5934690422757 2 557.8042602539062 MULTI HCD FTMS 0 0 0 1752 5737.61181640625 0.1262231062498899 17 -0.15056228637695312 2 Unmodified _MFPLAILYF_ REV__ENST00000328902.9_1_7:150324506-150324674:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86046.7 NaN 636 1116 1752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1755 21.044 NaN 42033 35 0 10884 0.261 -1 CPRLCTCEI 9 20 547.7429211167145 1093.4712893002288 2 547.7430419921875 MULTI HCD FTMS 0 0 0 1752 14410.0498046875 1 0 0 3 Carbamidomethyl (C) _CPRLC(Carbamidomethyl (C))TCEI_ ENSG00000173114|ENST00000308478|LRRN3 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84930 NaN 637 1116 1752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1757 21.05 NaN 78562 35 0 8075.3 0.327 + 14135 LADKERVAA 9 34 486.77737151221424 971.5401900912285 2 486.777099609375 MULTI HCD FTMS 0 0 0 1756 58540.671875 0.6032012013138525 4 -0.03429222106933594 1 Unmodified _LADKERVAA_ ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF 18.373094154950223 0.20161688160436167 1 {I|L}ADKE 5 4 66.013 0 0 6.7947 0 0 0 412.23163782291255 412.23163782291255 48.05462187404089 0 0 0 0 0.805462187404089 2 0 0 + {I|L}ADKE 6.7947 + + 28 + NaN NaN 96967.6 NaN 638 1117 1756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1758 21.054 NaN 15856 35 0 4632.4 0.261 + 18330 MPEYLYFVD 9 10 588.7664347540053 NaN 0 588.765380859375 PEAK HCD FTMS 0 0 0 1756 3407.587646484375 0.49525670569540214 22 -0.18816375732421875 2 Unmodified _MPEYLYFVD_ REV__ENSG00000147119|ENST00000276055|CHST7 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78861.7 NaN 639 1117 1756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1760 21.06 NaN 78542 35 0 20875 0.411 + 26400 SSTLDPFPRAE 11 43 407.20379303940683 NaN 0 407.2039794921875 PEAK HCD FTMS 0 0 0 1759 22023.28125 0.5589547808520839 -93 0.8883380889892578 1 Unmodified _SSTLDPFPRAE_ REV__ENSG00000106546|ENST00000242057|AHR 0.09484139111097674 0.34185110575506755 1 R 1 -1 3.0989 0 0 0.38146 0 0 268.4159956473699 384.8564019053161 653.272397552686 0 0 0 0 0 0 0 0 0 R 0.38146 + + 1 + NaN NaN 98626.3 NaN 640 1118 1759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1762 21.068 NaN 93417 35 0 17912 0.411 -1 0 38 483.7319210099363 965.4492890866726 2 483.73162841796875 MULTI HCD FTMS 0 0 0 1761 66584.7578125 0.7095183789161668 -9 0.09320259094238281 1 NaN NaN 1 [NS]S[WR]AV 7 -1 61.604 0 0 6.3808 0 0 0 162.0229064050973 162.0229064050973 40.634410279347506 0 0 0 0 2.305462187404089 1.3979400086720375 0.7302046884880937 0.7302046884880937 [NS]S[WR]AV 6.3808 - 50 NaN NaN 108106.6 NaN 641 1119 1761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1764 21.076 NaN 36747 35 0 5169.9 0.411 -1 0 37 477.51664613296435 2382.546848331822 5 477.7298583984375 MULTI HCD FTMS 0 0 0 1763 1775.5052490234375 0.1369146664019921 -11 0.10933303833007812 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 87288.7 NaN 642 1120 1763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1767 21.091 NaN 140740 35 0 13142 0.411 + 25426 SESAQSKML 9 57 498.7371095332651 995.4596661333302 2 498.7368469238281 MULTI HCD FTMS 0 0 0 1766 89219 0.610147569813616 22 -0.1984424591064453 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 93.16586880292088 0.00444300900000894 1 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 {[ES]|[DT]|[{I|L}C]} + + 63.945 8.4814 3.9252 6.4236 6.4236 64.023 0 0 0 0 40.75720713938118 0 0 0 2.110924374808178 0 0.7302046884880937 0.3807196863200844 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 6.4236 + + 145 + NaN NaN 114619.9 NaN 643 1122 1766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1771 21.114 NaN 131340 35 0 28764 0.327 + 4284 EVLQGGSQR 9 33 487.2568311251941 972.4991093171882 2 487.25665283203125 MULTI HCD FTMS 0 0 0 1770 35916.50390625 0.42426565364169516 -9 0.07806587219238281 1 Unmodified _EVLQGGSQR_ ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1 7.101721422024254 0.29718071671418667 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QM 5 5 19.208 0 0 1.9751 0 0 0 369.17035852603755 369.17035852603755 0 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QM 1.9751 - 43 + NaN NaN 103624.4 NaN 644 1125 1770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1772 21.119 NaN 57500 35 0 9765.2 0.261 -1 EAAGEVRAM 9 26 475.22408843593456 948.4336239386691 2 475.2237243652344 MULTI HCD FTMS 0 0 0 1770 18668.166015625 0.039194360277379305 77 -0.751678466796875 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 14.838274106304384 0.23215694253501695 1 WVR{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 26.198 0 0 2.7622 0 0 271.11643751464413 0 271.11643751464413 0 18.239087409443187 0 0 0 0.2742275032520141 0 0.4247425010840047 0 WVR{[MS]|[{M(Oxidation (M))|F}A]} 2.7622 - 18 + NaN NaN 92075.8 NaN 645 1125 1770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1774 21.124 NaN 76329 35 0 33141 0.327 + 727 AQSPRSASPPG 11 23 527.7675209974478 1053.5204890616956 2 527.7674560546875 MULTI HCD FTMS 0 0 0 1773 44788.640625 1 0 0 1 Unmodified _AQSPRSASPPG_ ENSG00000246922|ENST00000559089|UBAP1L 8.155526934196011 0.3831532958467648 1 Q 1 10 6.9897 0 0 0.66346 0 0 644.3249457040769 278.11411462955317 922.4390603336301 0 0 0 0 0 0 0 0 0 + Q 0.66346 + + 6 + NaN NaN 97476.7 NaN 646 1126 1773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1775 21.129 NaN 14766 35 0 3199.7 0.261 + 33288 YFLWYLTY 8 13 584.7892367250454 NaN 0 584.7896118164062 PEAK HCD FTMS 0 0 0 1773 8634.302734375 1 0 0 2 Unmodified _YFLWYLTY_ REV__ENSG00000171488|ENST00000370454|LRRC8C 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95711 NaN 647 1126 1773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1777 21.134 NaN 173930 35 0 51240 0.327 -1 NAAHQEALM 9 31 500.72955486890146 999.4445568046029 2 500.7294006347656 MULTI HCD FTMS 0 0 0 1776 149087.453125 0.38540847793897687 -18 0.1677398681640625 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 32.78568957990786 0.09846250359632436 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2767539254999 0 650.2767539254999 0 30.74031267727719 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 32 + NaN NaN 113085.1 NaN 648 1127 1776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1778 21.139 NaN 42871 35 0 5730.1 0.261 -1 TPNEERNVM 9 23 553.250717362552 1104.486881791904 2 553.2507934570312 MULTI HCD FTMS 0 0 0 1776 21262.724609375 0.5619641757816771 -10 0.084686279296875 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 4.897010918128616 0.31389406404703984 1 TP 2 -1 19.464 0 0 1.7623 0 0 0 903.3651827447874 903.3651827447874 19.463950151760656 0 0 0 0 0 0 0 0 TP 1.7623 + + 1 + NaN NaN 100151.9 NaN 649 1127 1776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1779 21.142 NaN 43661 35 0 8842.4 0.261 + 32429 WATYESFPK 9 24 564.7724378411161 NaN 0 564.7607421875 PEAK HCD FTMS 0 0 0 1776 3294.13720703125 1 0 0 3 Unmodified _WATYESFPK_ REV__ENSG00000104331|ENST00000262644|BPNT2 4.75600775471527 0.27219989241163056 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89069.4 NaN 650 1127 1776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1781 21.148 NaN 195280 35 0 36809 0.411 + 22530 QSEAGSHTL 9 54 465.2196121762972 928.4246714193944 2 465.2195129394531 MULTI HCD FTMS 0 0 0 1780 98034.3359375 0.11641555973934126 -13 0.12116813659667969 1 Unmodified _QSEAGSHTL_ ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 26.88365393820708 0.12808753336095696 1 {[QS]|[NT]}EA[SG]H[{I|L}T] 9 0 + 29.709 0 0 3.1999 3.1999 84.882 0 0 0 15.640815173175046 7.147642715192507 7.147642715192507 9.532796692927267 0 0 0 1.055462187404089 0 + + {[QS]|[NT]}EA[SG]H[{I|L}T];{[QS]|[NT]}E{[QS]|[NT]}H[{I|L}T] 3.1999;2.1732 +;- + 52 + NaN NaN 142600.2 NaN 651 1128 1780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1783 21.156 NaN 32835 35 0 5758.7 0.411 + 2479 DRRRRFAL 8 32 545.3224426114896 1088.630332289779 2 545.3225708007812 MULTI HCD FTMS 0 0 0 1782 6284.8720703125 0.5943188637173352 -4 0.04134368896484375 1 Unmodified _DRRRRFAL_ REV__ENSG00000085552|ENST00000368094|IGSF9;REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF;REV__ENST00000496645.5_1_1:159897137-159899822:-|nuORF;REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103175.8 NaN 652 1129 1782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1786 21.171 NaN 31382 35 0 5647.3 0.411 -1 RVDSSADPTM 10 37 547.7429211167145 1093.4712893002288 2 547.7432861328125 MULTI HCD FTMS 0 0 0 1785 1565.416015625 0.10863362978216633 15 -0.13329315185546875 1 Oxidation (M) _RVDSSADPTM(Oxidation (M))_ ENSG00000143633|ENST00000366649|C1orf131;ENST00000471936.1_1_1:231374554-231376902:-|nuORF;nc|nan|Q8NDD1-5|C1orf131;nc|nan|Q8NDD1-6|C1orf131;nc|nan|Q8NDD1-7|C1orf131 4.5288652416199255 0.4513317009562028 1 TD[TP]{M(Oxidation (M))|F} 5 -1 23.328 0 0 2.1334 0 0 514.2635975568375 0 514.2635975568375 0 23.327731244245342 0 0 0 0.5 0 0 0 TD[TP]{M(Oxidation (M))|F} 2.1334 - 5 NaN NaN 92842.6 NaN 653 1131 1785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1789 21.187 NaN 108860 35 0 21353 0.327 -1 0 22 483.7319210099363 965.4492890866726 2 483.7315673828125 MULTI HCD FTMS 0 0 0 1788 76811.296875 0.8184910275511625 5 -0.04348564147949219 1 NaN NaN 1 [NS]S[WR]AV{M(Oxidation (M))|F} 8 -1 [NS] + + 44.64 5.2288 2.6004 4.6238 4.6238 60.957 0 0 0 0 44.640012553530966 0 0 0 1.9247425010840047 0 0.3252574989159953 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.6238 - 21 + NaN NaN 103213.7 NaN 654 1133 1788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1790 21.191 NaN 19128 35 0 5516.2 0.261 -1 NLCRNGQCI 9 17 588.7664353070636 NaN 0 588.7669067382812 PEAK HCD FTMS 0 0 0 1788 4367.3603515625 0.6993720678692461 5 -0.04348564147949219 2 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))NLC(Carbamidomethyl (C))RNGQC(Carbamidomethyl (C))I_ ENSG00000166147|ENST00000316623|FBN1;FBN1|p.T1950R|1|0.43|ENSG00000166147|chr15:48445444-48445444|G/C|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97255.7 NaN 655 1133 1788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1792 21.197 NaN 43611 35 0 5942.6 0.411 -1 0 43 477.51664613296435 2382.546848331822 5 477.72998046875 MULTI HCD FTMS 0 0 0 1791 8398.2626953125 0.6476158467666843 3 -0.02603912353515625 1 NaN NaN 1 {[ES]|[DT]|[{I|L}C]}W 3 -1 4.437 0 0 0.18623 0 0 0 1977.3659760996532 1977.3659760996532 3.177915127358128 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}W 0.18623 - 10 NaN NaN 97989.3 NaN 656 1134 1791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1794 21.205 NaN 31772 35 0 5200.2 0.327 -1 0 27 477.51664613296435 2382.546848331822 5 477.7295227050781 MULTI HCD FTMS 0 0 0 1793 6978.7509765625 0.5381529355568908 4 -0.0329132080078125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85299.5 NaN 657 1135 1793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1795 21.209 NaN 31242 35 0 10373 0.261 + 33241 YFHHMGKC 8 20 511.7203125365078 NaN 0 511.72003173828125 PEAK HCD FTMS 0 0 0 1793 6378.21240234375 0.7730051144372042 -12 0.10541915893554688 2 Unmodified _YFHHMGKC_ ENSG00000132530|ENST00000361842|XAF1;ENST00000575369.5_1_17:6662992-6674357:+|nuORF;nc|ENSG00000132530|Q6GPH4-2|XAF1;nc|ENSG00000132530|Q6GPH4-6|XAF1;nc|ENSG00000132530|Q6GPH4-7|XAF1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89457.9 NaN 658 1135 1793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1797 21.215 NaN 29667 35 0 4818.5 0.411 -1 MVFHTGTQR 9 24 546.7665514515612 1091.5185499699223 2 546.7665405273438 MULTI HCD FTMS 0 0 0 1796 3916.740234375 0.25045455961842034 -19 0.16520309448242188 1 Oxidation (M) _M(Oxidation (M))VFHTGTQR_ chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000527422.5_1_6:26365529-26368244:+|nuORF;ENST00000530653.5_1_6:26365433-26368244:+|nuORF;ENST00000532865.5_2_6:26365529-26368244:+|nuORF 2.9952420565917617 0.3283108881486655 1 H{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 4 -1 13.188 0 0 1.2082 0 0 561.2868519513687 0 561.2868519513687 0 13.187587626244124 0 0 0 0 0 0 0 H{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 1.2082 - 3 NaN NaN 91962.2 NaN 659 1136 1796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1801 21.238 NaN 46940 35 0 6771.4 0.327 + 21923 QEAVERSM 8 27 475.2240532534603 948.4335535737206 2 475.2239990234375 MULTI HCD FTMS 0 0 0 1800 18311.603515625 0.05732186310066789 -54 0.4906501770019531 1 Unmodified _QEAVERSM_ REV__ENSG00000072134|ENST00000314728|EPN2;REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF;REV__EPN2|p.T470Nfs*19|1|0.3|ENSG00000072134|chr17:19329636-19329637|-/A|frameshift_variant;REV__nc|ENSG00000072134|O95208-2|EPN2;REV__nc|ENSG00000072134|O95208-3|EPN2 10.073929032068715 0.5196730168178844 1 GEVR{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 31.159 0 0 3.2853 0 0 271.1128881457893 0 271.1128881457893 0 24.960762528683702 0 0 0 0 0 0.4247425010840047 0 GEVR{[MS]|[{M(Oxidation (M))|F}A]} 3.2853 - 27 + NaN NaN 89141.6 NaN 660 1139 1800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1802 21.245 NaN 28723 35 0 3699.5 0.268 -1 NAESGRGQVM 10 23 532.7431625784952 1063.4717722237904 2 532.7428588867188 MULTI HCD FTMS 0 0 0 1800 10949.28515625 0.7229299453408441 -1 0.0073795318603515625 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102335.3 NaN 661 1139 1800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1803 21.249 NaN 37777 35 0 10382 0.261 -1 CGYLTWHS 8 30 512.221826838174 NaN 0 512.2214965820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))GYLTWHS_ ENSG00000137414|ENST00000259963|FAM8A1 0.7936320650641473 0.38822285293237185 1 N 1 -1 2.2185 0 0 0.21698 0 0 493.59970728787306 411.76389490299067 905.3636021908637 0 0 0 0 0 0 0 0 0 N 0.21698 - 1 + NaN NaN 92681.4 NaN 662 1139 1800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1805 21.254 NaN 131070 35 0 27403 0.327 + 4285 EVLQGGSQR 9 43 487.2568311251941 972.4991093171882 2 487.2566223144531 MULTI HCD FTMS 0 0 0 1804 37493.15234375 0.4428898989648234 6 -0.05039405822753906 1 Unmodified _EVLQGGSQR_ ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1 21.590151480376914 0.17382222009858564 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QNS{[{M(Oxidation (M))|F}H]|[RQ]} 8 2 + 34.486 0 0 3.5462 3.5462 79.631 0 0 0 27.012131247412512 4.6040937697618745 4.6040937697618745 0.5115252244738073 0 0.6861818737241735 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QNS{[{M(Oxidation (M))|F}H]|[RQ]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}QGGS{[{M(Oxidation (M))|F}H]|[RQ]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[AG]NS{[{M(Oxidation (M))|F}H]|[RQ]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[AG]GGS{[{M(Oxidation (M))|F}H]|[RQ]} 3.5462;3.4936;2.5938;2.5467 -;+;-;- + 80 + NaN NaN 98326 NaN 663 1140 1804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1806 21.259 NaN 46250 35 0 10272 0.261 + 22159 QKQNQNPPT 9 19 527.7675209974478 1053.5204890616956 2 527.7672729492188 MULTI HCD FTMS 0 0 0 1804 14156.349609375 0.3160700885722628 14 -0.11661338806152344 2 Unmodified _QKQNQNPPT_ REV__ENSG00000119777|ENST00000238788|TMEM214;REV__ENST00000478980.1_1_2:27256012-27257182:+|nuORF;REV__ENST00000495312.1_1_2:27255799-27258254:+|nuORF;REV__nc|ENSG00000119777|Q6NUQ4-2|TMEM214 3.944395688203298 0.32111559684428237 1 Q 1 -1 5.4846 0 0 0.52059 0 0 644.32570864353 278.1142672174438 922.4399758609738 0 0 0 0 0 0 0 0 0 Q 0.52059 + + 1 + NaN NaN 102294.6 NaN 664 1140 1804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1808 21.264 NaN 472900 35 0 126110 0.327 + 18756 NAAHQEALM 9 55 500.72955486890146 999.4445568046029 2 500.72943115234375 MULTI HCD FTMS 0 0 0 1807 339743.78125 0.8782773524946498 -4 0.04153251647949219 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 90.13494162714682 0.004522430935000059 1 NAAHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 99.07 0 0 9.9125 9.9125 93.738 0 0 0 15.60016905927597 15.60016905927597 15.60016905927597 9.208187539523749 0 2.6549471895720984 1.5228787452803376 0.25 0 + + NAAHQEA{I|L}{M(Oxidation (M))|F};NAAH[AG]EA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F} 9.9125;8.9912;8.3516;7.4303 +;-;+;- + 395 + NaN NaN 148530 NaN 665 1141 1807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1809 21.269 NaN 64830 35 0 10520 0.261 -1 TPNEERNVM 9 39 553.250717362552 1104.486881791904 2 553.250732421875 MULTI HCD FTMS 0 0 0 1807 34599.0078125 0.9144360972272825 4 -0.03289222717285156 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 5.296884461304476 0.3108627248283497 1 E[Y{I|L}]{M(Oxidation (M))|F} 4 -1 10.802 0 0 0.97801 0 0 534.2654896466812 0 534.2654896466812 0 10.801981352645814 0 0 0 0 0 0 0 E[Y{I|L}]{M(Oxidation (M))|F} 0.97801 - 6 NaN NaN 93185.7 NaN 666 1141 1807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1811 21.274 NaN 1210900 35 0 240210 0.411 + 22531 QSEAGSHTL 9 88 465.2196121762972 928.4246714193944 2 465.21954345703125 MULTI HCD FTMS 0 0 0 1810 828321.3125 0.9836297488687042 1 -0.007989883422851562 1 Unmodified _QSEAGSHTL_ ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 183.0388951392065 8.687204194748383E-13 1 QSEA[SG]HT{I|L} 9 0 + 58.779 0 0 6.3311 6.3311 89.19 0 0 0 9.237423382189633 9.237423382189633 9.237423382189633 9.237423382189633 0 1.4258337024346173 0.721246399047171 1.6496498648046138 0 + + QSEA[SG]HT{I|L};{[QS]|[NT]}E[HT]NT{I|L};QSE{[QS]|[NT]}HT{I|L};{[QS]|[NT]}E[HT]GGT{I|L};{[CP]|[EA]}GS[HT]NT{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S[HT]NT{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S[HT]GGT{I|L};{[CP]|[EA]}GS[HT]GGT{I|L};[PG][DG]QQNT{I|L};[PG][DG]A{[QG]|[NA]}NT{I|L} 6.3311;5.3361;4.9177;4.3385;3.8899;3.4197;2.4221;2.2401;1.0027;0.62919 +;-;-;-;-;-;-;-;-;- + 912 + NaN NaN 458695.8 NaN 667 1142 1810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1816 21.305 NaN 94530 35 0 16445 0.327 -1 0 34 483.7319210099363 965.4492890866726 2 483.7314147949219 MULTI HCD FTMS 0 0 0 1815 74585.3359375 0.7947714820006159 18 -0.1592273712158203 1 NaN NaN 1 [NS]SK[DV]AV{M(Oxidation (M))|F} 9 -1 [NS] + + 44.697 5.2288 2.6004 4.6297 4.6297 60.965 0 0 0 0 44.69736975478526 0 0 0 1.9247425010840047 0 0 0 [NS]SK[DV]AV{M(Oxidation (M))|F} 4.6297 - 54 + NaN NaN 94443.5 NaN 668 1146 1815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1817 21.309 NaN 39752 35 0 8056.3 0.261 -1 PPCSCCCL 8 16 527.1852230907881 1052.355893248376 2 527.1853637695312 MULTI HCD FTMS 0 0 0 1815 9747.345703125 0.8105250455800876 2 -0.017948150634765625 2 4 Carbamidomethyl (C) _PPC(Carbamidomethyl (C))SC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))L_ ENST00000357325.9_1_1:156713081-156713234:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87837.1 NaN 669 1146 1815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1819 21.315 NaN 13016 35 0 5211.1 0.411 + 32819 WTYHPWWT 8 15 588.7665563341054 NaN 0 588.7670288085938 PEAK HCD FTMS 0 0 0 1818 3632.82958984375 0.4839817118222515 -15 0.13520431518554688 1 Unmodified _WTYHPWWT_ nc|ENSG00000196547|P49641-1|MAN2A2 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90865.1 NaN 670 1147 1818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1821 21.323 NaN 70027 35 0 10869 0.411 + 13132 KYLLAAGA 8 33 403.7421662926659 805.4697796521318 2 403.74200439453125 MULTI HCD FTMS 0 0 0 1820 18694.98828125 0.1595187835458554 -12 0.1077880859375 1 Unmodified _KYLLAAGA_ ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 6.354104778181461 0.5325651638111438 1 KY{I|L} 3 5 25.991 0 0 3.2268 0 0 0 398.2036532037719 398.2036532037719 20.533349251486058 0 0 0 0 0.5 0 0 0 + KY{I|L} 3.2268 + + 8 + NaN NaN 114452 NaN 671 1148 1820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1823 21.331 NaN 20933 35 0 5378.7 0.411 -1 YCILCYTS 8 22 511.7203125365078 NaN 0 511.7199401855469 PEAK HCD FTMS 0 0 0 1822 1602.1741943359375 0.1941749142731417 1 -0.00804901123046875 1 Carbamidomethyl (C) _YCILC(Carbamidomethyl (C))YTS_ ENST00000552941.5_3_14:65528035-65528353:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76086.7 NaN 672 1149 1822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1825 21.339 NaN 31900 35 0 4990.2 0.411 -1 WKMEFDTR 8 30 564.7607260848066 1127.5068992364131 2 564.7604370117188 MULTI HCD FTMS 0 0 0 1824 9355.9072265625 0.857424888893503 10 -0.08918380737304688 1 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86896.3 NaN 673 1150 1824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1827 21.347 NaN 37289 35 0 4554.5 0.411 -1 MVFHTGTQR 9 31 546.7665514515612 1091.5185499699223 2 546.7669067382812 MULTI HCD FTMS 0 0 0 1826 14728.021484375 0.9417780894801632 -4 0.0321807861328125 1 Oxidation (M) _M(Oxidation (M))VFHTGTQR_ chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000527422.5_1_6:26365529-26368244:+|nuORF;ENST00000530653.5_1_6:26365433-26368244:+|nuORF;ENST00000532865.5_2_6:26365529-26368244:+|nuORF 12.240655878213236 0.2545997876781172 1 TH{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 5 -1 19.693 0 0 1.8042 0 0 460.238573142775 0 460.238573142775 0 19.69273760456403 0 0 0 0.5 0 0 0 TH{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 1.8042 - 12 NaN NaN 85993.9 NaN 674 1151 1826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1829 21.355 NaN 52621 35 0 15501 0.411 -1 CCKCKQWFH 9 24 451.86036968602156 NaN 0 451.86041259765625 PEAK HCD FTMS 0 0 0 1828 20061.306640625 0.7387167111802565 389 -4.441310882568359 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))KC(Carbamidomethyl (C))KQWFH_ ENSG00000143033|ENST00000370298|MTF2;ENST00000468457.1_1_1:93583908-93584959:+|nuORF;ENST00000471953.5_1_1:93545083-93592837:+|nuORF;nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2 0.26902006276349055 0.29394320858957723 1 N 1 -1 2.2185 0 0 0.24603 0 0 432.8783798976306 351.76032434635005 784.6387042439807 0 0 0 0 0 0 0 0 0 N 0.24603 - 1 + NaN NaN 93648.8 NaN 675 1152 1828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1831 21.363 NaN 67542 35 0 7098.7 0.411 -1 EAAGEVRAM 9 46 475.2240532534603 948.4335535737206 2 475.2236633300781 MULTI HCD FTMS 0 0 0 1830 33290.18359375 0.10421017170499317 -40 0.3646354675292969 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 21.536976647645854 0.1742816388551942 1 {[CP]|[EA]}AGEV{M(Oxidation (M))|F}AR 9 -1 + 50.479 0 0 5.3223 5.3223 84.84 0 0 0 7.147642715192504 9.208187539523749 7.147642715192504 6.478174818886373 0 0.23965182871044374 0 0 0 {[CP]|[EA]}AGEV{M(Oxidation (M))|F}AR;{[CP]|[EA]}QEV{M(Oxidation (M))|F}AR;{[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]};{NN|[MP]|[D{I|L}]|[EV]}[DN]V{M(Oxidation (M))|F}AR;{NN|[MP]|[D{I|L}]|[EV]}[DN]VR{[MS]|[{M(Oxidation (M))|F}A]};{NN|[MP]|[D{I|L}]|[EV]}{[DA]|[EG]}{[MS]|[{M(Oxidation (M))|F}A]}AAR;{NN|[MP]|[D{I|L}]|[EV]}{[DA]|[EG]}AA{M(Oxidation (M))|F}AR;{[CP]|[EA]}[DV]AA{M(Oxidation (M))|F}AR;{[CP]|[EA]}[DV]{[MS]|[{M(Oxidation (M))|F}A]}AAR 5.3223;4.6393;4.3514;3.6684;3.531;2.5601;1.7987;1.7987;1.2474;1.2474 -;-;+;-;-;-;-;-;-;- + 188 + NaN NaN 116324 NaN 676 1153 1830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1833 21.371 NaN 153660 35 0 18876 0.411 + 22534 QSEDGSHTL 9 59 487.21478286879574 972.4150128043915 2 487.2143859863281 MULTI HCD FTMS 0 0 0 1832 43319.1640625 0.06941088487667343 -14 0.11661338806152344 1 Unmodified _QSEDGSHTL_ ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C 43.85829265575387 0.04763305254408404 1 [Q{I|L}]QSGDP[DN] 9 7 + 25.121 0 0 2.5834 2.5834 78.802 0 0 0 0.025749891599531338 0.025749891599531338 0.025749891599531338 0.025749891599531338 0 0 0 0.6203715150305281 0 [Q{I|L}]QSGDP[DN];{[QS]|[NT]}EDGSH[{I|L}T];[Q{I|L}][AG]SGDP[DN];{NN|[MP]|[D{I|L}]|[EV]}{[RE]|[WV]}DP[DN];{[QS]|[NT]}[Q{I|L}]GDP[DN] 2.5834;2.5807;1.6365;1.0599;1.0512 -;+;-;-;- + 114 NaN NaN 126125.4 NaN 677 1154 1832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1836 21.386 NaN 295590 35 0 81362 0.327 + 18757 NAAHQEALM 9 49 500.72955486890146 999.4445568046029 2 500.72943115234375 MULTI HCD FTMS 0 0 0 1835 231419.59375 0.5982466768525654 11 -0.11196136474609375 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 67.83816525789305 0.009787749748478139 1 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 80.231 0 0 8.0276 8.0276 91.478 0 0 0 2.7516993347643535 2.7516993347643535 2.7516993347643535 9.208187539523749 0 2.610924374808178 1.3979400086720375 0 0 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F} 8.0276;7.1063 +;- + 198 + NaN NaN 121557.8 NaN 678 1156 1835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1837 21.391 NaN 40534 35 0 5199.2 0.261 -1 TPNEERNVM 9 28 553.250717362552 1104.486881791904 2 553.2503051757812 MULTI HCD FTMS 0 0 0 1835 21411.103515625 0.5658857630328896 19 -0.20390701293945312 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 2.9952420565917617 0.3283108881486655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98912.1 NaN 679 1156 1835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1838 21.394 NaN 41090 35 0 6687.5 0.261 + -1 EQGSTNRLC 9 24 532.7431625784952 1063.4717722237904 2 532.7439575195312 MULTI HCD FTMS 0 0 0 1835 11642.7001953125 0.7687128881662786 16 -0.17313194274902344 3 Carbamidomethyl (C) _EQGSTNRLC(Carbamidomethyl (C))_ REV__ENST00000264275.9_1_2:202098277-202098322:+|nuORF 1.4819007175156935 0.3397831423917744 1 [WQ]S 3 -1 10.458 0 0 0.98334 0 0 0 659.2970675104124 659.2970675104124 7.983324797206281 0 0 0 0 0 0 0 0 [WQ]S 0.98334 - 1 + NaN NaN 90187.7 NaN 680 1156 1835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1840 21.4 NaN 499740 35 0 70652 0.411 + 22532 QSEAGSHTL 9 85 465.2196121762972 928.4246714193944 2 465.21954345703125 MULTI HCD FTMS 0 0 0 1839 242837.9375 0.2883695202263905 16 -0.17622756958007812 1 Unmodified _QSEAGSHTL_ ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 92.4914307365334 0.004460681868130716 1 {[QS]|[NT]}EA[SG]HT{I|L} 9 0 + 33.863 0 0 3.6473 3.6473 85.377 0 0 0 11.206100864080277 2.1084052438762058 2.1084052438762058 9.973024840566467 0 0.7881068352144719 0 1.0629529932484498 0 + + {[QS]|[NT]}EA[SG]HT{I|L};{[QS]|[NT]}E{[QS]|[NT]}HT{I|L};[HS]T{I|L}GA{[QS]|[NT]}E;[HS]T{I|L}Q{[QS]|[NT]}E 3.6473;2.5731;1.3129;1.2636 +;-;-;- + 550 + NaN NaN 231975 NaN 681 1157 1839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1842 21.408 NaN 93793 35 0 18879 0.327 + 25245 SASSKEPAM 9 36 454.2129906168807 906.4114283005614 2 454.21282958984375 MULTI HCD FTMS 0 0 0 1841 29998.396484375 0.5712539821617897 -5 0.04514312744140625 1 Unmodified _SASSKEPAM_ ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1 21.536976647645854 0.1742816388551942 1 {[SA]|[TG]}SS{[TV]|[{I|L}S]}G 7 5 24.041 0 0 2.6523 0 0 0 314.1189364068969 314.1189364068969 21.566366357824975 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {[SA]|[TG]}SS{[TV]|[{I|L}S]}G 2.6523 - 12 + NaN NaN 97127.2 NaN 682 1158 1841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1843 21.412 NaN 13106 35 0 2098.7 0.261 + -1 PFCCVPSTSC 10 15 600.2300273351716 NaN 0 600.2298583984375 PEAK HCD FTMS 0 0 0 1841 2060.644775390625 0.5303401411152988 1 -0.009929656982421875 2 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))PFC(Carbamidomethyl (C))C(Carbamidomethyl (C))VPSTSC_ REV__ENST00000282120.6_1_2:85548099-85548267:-|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85307.6 NaN 683 1158 1841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1845 21.418 NaN 43271 35 0 5967.2 0.327 + -1 HKSKSPECE 9 21 551.2533201502873 1100.4920873673746 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1844 7986.9013671875 0.13650831192163804 174 -1.9129352569580078 1 Carbamidomethyl (C) _HKSKSPEC(Carbamidomethyl (C))E_ REV__ENSG00000165494|ENST00000690938|PCF11;REV__PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90620.5 NaN 684 1159 1844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1846 21.422 NaN 43588 35 0 12285 0.261 -1 TPNEERNVM 9 26 553.250717362552 1104.486881791904 2 553.2510375976562 MULTI HCD FTMS 0 0 0 1844 15872.80078125 0.4195109315599658 22 -0.23128509521484375 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 2.9952420565917617 0.3283108881486655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89855.9 NaN 685 1159 1844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1848 21.428 NaN 406200 35 0 43363 0.327 + 8515 HAGSELLQR 9 46 505.77244627722763 1009.5303396212553 2 505.7723083496094 MULTI HCD FTMS 0 0 0 1847 163387.890625 0.05046748528739834 -12 0.10527610778808594 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 58.678817012210395 0.019429721296335044 1 EAGSH{I|L}{I|L}QR 9 2 + 90.271 0 0 8.9419 8.9419 92.876 0 0 0 68.84434091480394 16.478174818886373 16.478174818886373 9.208187539523749 0 1.3169015600442577 0 0.3494850021680094 0.3252574989159953 EAGSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}QR;EQSH{I|L}{I|L}[AG]R 8.9419;8.0298;7.954;7.0365 -;-;-;- 143 + NaN NaN 142673.4 NaN 686 1160 1847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1849 21.432 NaN 85346 35 0 12646 0.261 -1 0 41 483.7319210099363 965.4492890866726 2 483.7317199707031 MULTI HCD FTMS 0 0 0 1847 41617.24609375 0.44346787393209264 32 -0.3444633483886719 2 NaN NaN 1 [NS]S[WR]AV{M(Oxidation (M))|F} 8 -1 [NS] + + 41.387 5.2288 2.6004 4.2869 4.2869 60.462 0 0 0 0 41.38743756437101 0 0 0 1.9247425010840047 0 0 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.2869 - 29 + NaN NaN 108327.8 NaN 687 1160 1847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1851 21.438 NaN 561690 35 0 117730 0.411 + 22533 QSEAGSHTL 9 78 465.2196121762972 928.4246714193944 2 465.2325439453125 MULTI HCD FTMS 0 0 0 1850 163355.765625 0.1939846147783064 20 -0.2113666534423828 1 Unmodified _QSEAGSHTL_ ENSG00000204592|ENST00000376630|HLA-E;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 68.08070601005525 0.009709267492204555 1 EA{[QV]|[N{I|L}]|[RA]|[KV]}RE 6 7 27.1 0 0 2.919 0 0 198.06419570136876 0 198.06419570136876 0 -3.7595264076186794 -3.7595264076186794 0 0 0 0 1.4916440611282624 0 EA{[QV]|[N{I|L}]|[RA]|[KV]}RE 2.919 - 358 NaN NaN 251811.7 NaN 688 1161 1850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1853 21.446 NaN 138660 35 0 26405 0.411 + 30133 VGFVSGLK 8 62 403.7421662926659 805.4697796521318 2 403.7420654296875 MULTI HCD FTMS 0 0 0 1852 91573.828125 0.7813722826340561 2 -0.017965316772460938 1 Unmodified _VGFVSGLK_ ENSG00000069188|ENST00000392650|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-3|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant 19.438996006549623 0.45076845602799126 1 KY{I|L}[TA]T 6 8 30.323 0 0 3.7646 0 0 0 125.07216821842032 125.07216821842032 6.470996953088388 0 0 0 0 0 0 1.4916440611282626 0 KY{I|L}[TA]T 3.7646 - 50 + NaN NaN 132771.1 NaN 689 1162 1852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1855 21.454 NaN 28698 35 0 4718.4 0.327 + 622 APGPAPVWAW 10 22 526.2717063609623 1050.5288597887245 2 526.2727661132812 MULTI HCD FTMS 0 0 0 1854 7182.73046875 0.39826444992181037 -7 0.06740570068359375 1 Unmodified _APGPAPVWAW_ REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF 1.844237919475145 0.46554186016084764 1 V 1 -1 5.4846 0 0 0.52208 0 0 461.20990334516824 487.2268465631469 948.4367499083152 0 0 0 0 0 0 0 0 0 V 0.52208 + + 4 + NaN NaN 90014.6 NaN 690 1163 1854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1856 21.458 NaN 33322 35 0 7857.2 0.261 + 12513 KRQRMVSPL 9 15 557.8311193260837 NaN 0 558.2340087890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KRQRMVSPL_ REV__ENST00000479713.1_1_Y:15591430-15591511:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85421.3 NaN 691 1163 1854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1858 21.464 NaN 39457 35 0 3626.3 0.411 + -1 VDMVSEML 8 31 478.2093608565475 NaN 0 478.20953369140625 PEAK HCD FTMS 0 0 0 1857 1888.577880859375 0.3068636144699901 -5 0.04597282409667969 1 2 Oxidation (M) _VDM(Oxidation (M))VSEM(Oxidation (M))L_ REV__ENSG00000261456|ENST00000568584|TUBB8;REV__TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99268.9 NaN 692 1164 1857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1860 21.472 NaN 34567 35 0 5934.5 0.327 + -1 YMHPICHF 8 19 532.2283011838589 1062.4420494345177 2 532.2284545898438 MULTI HCD FTMS 0 0 0 1859 20066.45703125 0.23900963257096106 -7 0.06394386291503906 1 Oxidation (M) _YM(Oxidation (M))HPICHF_ REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82431 NaN 693 1165 1859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1861 21.476 NaN 47431 35 0 10876 0.261 + 623 APGPAPVWAW 10 27 526.2717063609623 1050.5288597887245 2 526.7731323242188 MULTI HCD FTMS 0 0 0 1859 8857.2568359375 0.48337278553048035 -7 0.06394386291503906 2 Unmodified _APGPAPVWAW_ REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF 1.844237919475145 0.46554186016084764 1 V 1 -1 4.6041 0 0 0.43826 0 0 461.20870497850416 487.22617517642817 948.4348801549323 0 0 0 0 0 0 0 0 0 V 0.43826 + + 2 + NaN NaN 92923.6 NaN 694 1165 1859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1863 21.482 NaN 98830 35 0 14994 0.327 -1 EAAGEVRAM 9 39 475.2240532534603 948.4335535737206 2 475.2236328125 MULTI HCD FTMS 0 0 0 1862 56239.875 0.1760509074367998 -27 0.24411582946777344 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 21.536976647645854 0.1742816388551942 1 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 35.25 0 0 3.7166 3.7166 81.184 0 0 0 24.792293452872315 5.6424927368726046 5.6424927368726046 3.4678748622465676 0 0.23965182871044374 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]} 3.7166;3.351 +;- + 58 + NaN NaN 102707.7 NaN 695 1166 1862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1864 21.486 NaN 72870 35 0 9380.3 0.261 + 9588 HSAGLLRGA 9 31 441.2514834974202 880.4884140616405 2 441.25128173828125 MULTI HCD FTMS 0 0 0 1862 27717.216796875 0.3579179553804562 -6 0.054012298583984375 2 Unmodified _HSAGLLRGA_ REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF 21.536976647645854 0.1742816388551942 1 [HS]Q{I|L}{I|L}RQ 7 -1 + 44.174 0 0 5.0169 5.0169 87.096 0 0 0 5.2726570743408985 44.17358221842868 5.2726570743408985 9.33053210369387 0 1.5 0 0 0 [HS]Q{I|L}{I|L}RQ;[HS][AG]{I|L}{I|L}RQ 5.0169;3.9572 -;- 51 NaN NaN 106567.6 NaN 696 1166 1862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1865 21.49 NaN 40265 35 0 6925.9 0.261 + -1 PGCCVPMCC 9 25 513.6701247351416 1025.325696537083 2 513.6699829101562 MULTI HCD FTMS 0 0 0 1862 15653.3203125 1 0 0 3 2 Carbamidomethyl (C) _PGC(Carbamidomethyl (C))C(Carbamidomethyl (C))VPMCC_ REV__CON__P60413;REV__ENSG00000189169|ENST00000400365|KRTAP10-12 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92227.6 NaN 697 1166 1862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1866 21.493 NaN 42187 35 0 6810.3 0.261 + -1 VMFCLFLF 8 20 546.7665514515612 1091.5185499699223 2 546.7662963867188 MULTI HCD FTMS 0 0 0 1862 9162.9775390625 0.5859233359920734 11 -0.1260967254638672 4 Carbamidomethyl (C),Oxidation (M) _VM(Oxidation (M))FC(Carbamidomethyl (C))LFLF_ REV__ENSG00000116729|ENST00000262348|WLS;REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF;REV__nc|ENSG00000116729|Q5T9L3-2|WLS;REV__nc|ENSG00000116729|Q5T9L3-3|WLS 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92121.5 NaN 698 1166 1862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1868 21.499 NaN 1059500 35 0 199740 0.327 + 22535 QSEDGSHTL 9 78 487.21478286879574 972.4150128043915 2 487.2146301269531 MULTI HCD FTMS 0 0 0 1867 608101.9375 0.974369992832651 -1 0.016582489013671875 1 Unmodified _QSEDGSHTL_ ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C 103.74828524460852 0.00396301343438984 1 AGSEDGSHT{I|L} 10 2 + 59.461 0 0 6.1147 6.1147 90.6 0 0 0 25.363846624719812 14.017412290202671 14.017412290202671 16.035312760830394 0 0.6989700043360187 0 1.7856668758921828 0 AGSEDGSHT{I|L};D[QT]DGSHT{I|L} 6.1147;4.4657 -;- 333 + NaN NaN 237657.9 NaN 699 1167 1867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1870 21.506 NaN 108030 35 0 27932 0.327 -1 NAAHQEALM 9 34 500.72955486890146 999.4445568046029 2 500.7298278808594 MULTI HCD FTMS 0 0 0 1869 82133.3046875 0.21232418479351906 23 -0.2581920623779297 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 29.081581746732265 0.1154664336125038 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2769980661249 0 650.2769980661249 0 38.09894379144197 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 51 + NaN NaN 96431.4 NaN 700 1168 1869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1871 21.511 NaN 315170 35 0 60365 0.262 + 10220 IHGVTAGR 8 45 405.7327098492286 809.4508667652573 2 405.7325439453125 MULTI HCD FTMS 0 0 0 1869 72007.8671875 0.5041789328962801 -3 0.034175872802734375 2 Unmodified _IHGVTAGR_ KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant 18.13498045792455 0.4603629008820478 1 [SG]H{I|L}{I|L}QR 7 6 + 55.221 0 0 6.8221 6.8221 90.255 0 0 0 53.627363478019774 16.320232147054057 16.320232147054057 9.33053210369387 0 1.3494850021680094 0 0 0 [SG]H{I|L}{I|L}QR;[SG]H{I|L}{I|L}[AG]R 6.8221;5.6694 -;- 28 + NaN NaN 126917.8 NaN 701 1168 1869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1872 21.514 NaN 57050 35 0 4998.7 0.261 + 9293 HPPLSSSAVT 10 36 498.2616454877227 994.5087380422455 2 498.2615661621094 MULTI HCD FTMS 0 0 0 1869 24977.498046875 0.8086595799680494 -1 0.007625579833984375 3 Unmodified _HPPLSSSAVT_ REV__ENSG00000071909|ENST00000408978|MYO3B;REV__ENST00000409940.6_1_2:171034716-171376051:+|nuORF;REV__ENST00000438642.6_1_2:171034716-171400468:+|nuORF;REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF;REV__nc|ENSG00000071909|Q8WXR4-2|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-3|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-4|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-5|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-7|MYO3B 19.256988751693697 0.33098864134661865 1 HP 2 -1 22.474 0 0 2.2598 0 0 0 757.3722628229124 757.3722628229124 15.484550065040281 0 0 0 0 0.5 0 0 0 HP 2.2598 + + 24 + NaN NaN 81438.3 NaN 702 1168 1869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1873 21.517 NaN 77413 35 0 25489 0.261 + 22034 QGDPSVQMV 9 29 480.7266528137145 959.438752694229 2 480.7261047363281 MULTI HCD FTMS 0 0 0 1869 21994.130859375 0.3840288073910351 -5 0.052181243896484375 4 Unmodified _QGDPSVQMV_ REV__ENSG00000075702|ENST00000401500|WDR62;REV__ENST00000587391.5_1_19:36573967-36592308:+|nuORF;REV__nc|ENSG00000075702|O43379|WDR62 1.6526216038709556 0.33848895094777925 1 {[QG]|[NA]}D 3 -1 7.4473 0 0 0.77621 0 0 0 656.3096687921384 656.3096687921384 7.447274948966937 0 0 0 0 0 0 0 0 {[QG]|[NA]}D 0.77621 + + 5 NaN NaN 91506.2 NaN 703 1168 1869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1874 21.521 NaN 69819 35 0 9826 0.262 + 6221 FPERKEREM 9 32 407.8728753250739 1220.5967965754216 3 407.87274169921875 MULTI HCD FTMS 0 0 0 1869 14794.873046875 0.6810335092967899 -5 0.052181243896484375 5 Unmodified _FPERKEREM_ ENSG00000099795|ENST00000215565|NDUFB7 2.0860074813731053 0.33520356328030626 1 PE 2 7 20.969 0 0 1.7179 0 0 976.4774708720043 0 976.4774708720043 0 7.870156338638594 0 0 0 0 0 0 0 + PE 1.7179 + + 2 NaN NaN 91272.7 NaN 704 1168 1869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1876 21.526 NaN 38994 35 0 5265.8 0.327 -1 NKKKKKKN 8 27 529.3458016645708 NaN 0 529.3450317382812 PEAK HCD FTMS 0 0 0 1875 2582.250732421875 0.296703354965179 -4 0.05409812927246094 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NKKKKKKN_ EIF2S2|p.F133S|1|0.19|ENSG00000125977|chr20:34098533-34098533|A/G|missense_variant;ENSG00000125977|ENST00000374980|EIF2S2;REV__ENSG00000125977|ENST00000374980|EIF2S2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87009.2 NaN 705 1169 1875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1878 21.533 NaN 66464 35 0 9203 0.327 + 3256 EEAAFPGRR 9 32 516.7641510253723 1031.5137491175444 2 516.7640380859375 MULTI HCD FTMS 0 0 0 1877 30285.291015625 0.8214728530548101 -3 0.03498077392578125 1 Unmodified _EEAAFPGRR_ ENSG00000206181|ENST00000332567|ELOA2 5.731851221503515 0.3075653528928475 1 R 1 8 19.732 0 0 1.9129 0 0 857.4021290997695 0 857.4021290997695 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 + R 1.9129 + + 1 + NaN NaN 85010.7 NaN 706 1170 1877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1879 21.538 NaN 12630 35 0 3060.5 0.261 + -1 AKQFFKMYK 9 11 603.8202485931478 NaN 0 603.8198852539062 PEAK HCD FTMS 0 0 0 1877 6501.4208984375 0.8449356505604281 1 -0.016315460205078125 2 Oxidation (M) _AKQFFKM(Oxidation (M))YK_ REV__ENSG00000101457|ENST00000372622|DNTTIP1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83703.8 NaN 707 1170 1877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1880 21.541 NaN 24898 35 0 6321 0.261 + 33698 YKTPHIPPH 9 16 545.2957967646022 1088.5770405960043 2 545.2954711914062 MULTI HCD FTMS 0 0 0 1877 7282.69091796875 0.04448827877502376 -15 0.1544952392578125 3 Unmodified _YKTPHIPPH_ REV__ENSG00000177302|ENST00000321105|TOP3A;REV__nc|ENSG00000177302|Q13472-2|TOP3A;REV__nc|ENSG00000177302|Q13472-3|TOP3A 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95548.5 NaN 708 1170 1877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1881 21.544 NaN 15331 35 0 4782.6 0.261 -1 0 13 624.2356384275296 623.2283619609295 1 624.237060546875 MULTI HCD FTMS 0 0 0 1877 2960.999755859375 0.28753756188636986 -33 0.31060218811035156 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81127.1 NaN 709 1170 1877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1883 21.55 NaN 46803 35 0 4921.1 0.327 -1 EEKANACAR 9 28 524.7457923872006 1047.477031841201 2 524.7454833984375 MULTI HCD FTMS 0 0 0 1882 14291.23046875 0.6684847131072469 -1 0.016315460205078125 1 Carbamidomethyl (C) _EEKANAC(Carbamidomethyl (C))AR_ ENST00000522674.1_1_7:27228344-27228893:+|nuORF 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94842.2 NaN 710 1171 1882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1884 21.554 NaN 43907 35 0 11169 0.261 -1 TPNEERNVM 9 23 553.250717362552 1104.486881791904 2 553.2503662109375 MULTI HCD FTMS 0 0 0 1882 12834.7236328125 0.33921592929435485 34 -0.3477649688720703 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 1.4819007175156935 0.3397831423917744 1 E{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 10.458 0 0 0.94683 0 0 663.3021107404312 0 663.3021107404312 0 6.962724883926656 0 0 0 0 0 0 0 E{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.94683 - 2 NaN NaN 82081.6 NaN 711 1171 1882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1886 21.559 NaN 4439900 35 0 520060 0.327 + 149 AEGTHVIQR 9 116 505.77244627722763 1009.5303396212553 2 505.77276611328125 MULTI HCD FTMS 0 0 0 1885 3237488.25 1 0 0 1 Unmodified _AEGTHVIQR_ REV__ENSG00000170631|ENST00000394909|ZNF16 103.35351024395868 0.004027461563756449 1 EAGSH{I|L}{I|L}QR 9 -1 + 132.27 0 0 13.102 13.102 94.385 0 0 0 92.8185220640548 20.285371682087202 20.285371682087202 9.208187539523749 0 1.871562462479544 1.3010299956639813 1.024227503252014 1.6936726795685342 EAGSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;AEGSH{I|L}{I|L}QR;AEGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}QR;EQSH{I|L}{I|L}[AG]R;EAG[KQ]{[HG]|PP}QR;AEG[KQ]{[HG]|PP}QR;{[CP]|[EA]}GSH{I|L}{I|L}QR;[TA][DG]H{I|L}{I|L}QR 13.102;12.19;11.985;11.073;10.659;9.7414;6.3476;5.5768;5.52;4.9996 -;-;-;-;-;-;-;-;-;- 2136 + NaN NaN 750462.8 NaN 712 1172 1885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1887 21.564 NaN 405740 35 0 112690 0.261 + 27862 TDQAHKTE 8 56 465.2196121762972 928.4246714193944 2 465.2327575683594 MULTI HCD FTMS 0 0 0 1885 61170.48046875 0.07263981191073668 31 -0.3164539337158203 2 Unmodified _TDQAHKTE_ ENST00000555320.1_1_14:81288942-81289137:+|nuORF 10.823927491677226 0.514154816617796 1 TTP[RV][SG]{M(Oxidation (M))|F} 8 7 22.898 0 0 2.4663 0 0 65.02123513080251 0 65.02123513080251 0 8.852125957641995 0 0 0 0.4247425010840047 0 0.7302046884880937 0 TTP[RV][SG]{M(Oxidation (M))|F} 2.4663 - 93 + NaN NaN 159292.2 NaN 713 1172 1885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1888 21.567 NaN 50957 35 0 7233 0.261 -1 0 29 483.7319210099363 965.4492890866726 2 483.7317199707031 MULTI HCD FTMS 0 0 0 1885 36037.71484375 0.38401312636419044 44 -0.46045875549316406 3 NaN NaN 1 AV{M(Oxidation (M))|F} 3 -1 33.188 0 0 3.4375 0 0 630.296500856007 0 630.296500856007 0 33.187587626244124 0 0 0 1 0 0 0 AV{M(Oxidation (M))|F} 3.4375 - 10 + NaN NaN 86324.7 NaN 714 1172 1885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1889 21.571 NaN 50026 35 0 8291.5 0.261 + 14016 KYTPPPHHI 9 30 545.2957967646022 1088.5770405960043 2 545.2955932617188 MULTI HCD FTMS 0 0 0 1885 14048.4853515625 0.0858189561697711 -13 0.14173507690429688 4 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 7.289230182591677 0.29575926068275815 1 [YK]T 3 6 14.705 0 0 1.3508 0 0 0 693.3477074710376 693.3477074710376 14.704999916446797 0 0 0 0 0.4247425010840047 0 0 0 + [YK]T 1.3508 + + 2 + NaN NaN 86890.8 NaN 715 1172 1885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1893 21.59 NaN 129900 35 0 18626 0.411 + 20480 PCPFNAMFH 9 58 532.2283011838589 1062.4420494345177 2 532.22802734375 MULTI HCD FTMS 0 0 0 1892 75697.0546875 0.9016203109192463 3 -0.030652999877929688 1 Unmodified _PCPFNAMFH_ REV__ENSG00000180592|ENST00000449193|SKIDA1;REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1 4.75600775471527 0.31496297302216103 1 RT 2 -1 9.2217 0 0 0.86797 0 0 62.00108367291086 740.2629488580686 802.2640325309795 0 0 0 0 0 0 0 0.3252574989159953 0 RT 0.86797 - 11 + NaN NaN 114364.9 NaN 716 1175 1892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1895 21.598 NaN 46748 35 0 11534 0.327 -1 SPSPMDPHM 9 15 515.7020570247579 1029.3895611163157 2 515.7022094726562 MULTI HCD FTMS 0 0 0 1894 13436.4443359375 0.5382213750133001 1 -0.009840011596679688 1 2 Oxidation (M) _SPSPM(Oxidation (M))DPHM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 4.3292370932331545 0.3181982124262546 1 [RD]Q 3 -1 15.458 0 0 1.5016 0 0 0 627.2099029747712 627.2099029747712 15.45757490560675 0 0 0 0 0.5 0 0 0 [RD]Q 1.5016 - 1 + NaN NaN 88419.1 NaN 717 1176 1894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1896 21.602 NaN 48609 35 0 10975 0.261 + 26401 SSTSVVELVM 10 27 526.2717063609623 1050.5288597887245 2 526.7722778320312 MULTI HCD FTMS 0 0 0 1894 13990.3056640625 0.7635019673159296 4 -0.0410919189453125 2 Unmodified _SSTSVVELVM_ ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA 6.2057823575117 0.44245551207394906 1 {[NV]|[RG]}YT 4 9 13.188 0 0 1.2553 0 0 0 570.3019503229124 570.3019503229124 4.960762528683702 0 0 0 0 0 0 0 0 {[NV]|[RG]}YT 1.2553 - 7 + NaN NaN 91791.8 NaN 718 1176 1894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1898 21.608 NaN 313380 35 0 52131 0.327 + 2980 EAAGEVRAM 9 56 475.2240532534603 948.4335535737206 2 475.223876953125 MULTI HCD FTMS 0 0 0 1897 168391.71875 0.527126258562628 -16 0.17016029357910156 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 85.64151623876279 0.004640175941193596 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 66.155 0 0 6.9752 6.9752 86.438 0 0 0 37.738708148331156 14.973024840566467 14.973024840566467 3.4678748622465605 0 1.3754223615525998 0 0.3807196863200844 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}[RD]V[VG]A{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F} 6.9752;6.6096;4.689;4.668;4.0059;3.4536;3.0651;3.0442;2.6144;2.3821 +;-;-;-;-;-;-;-;-;- + 410 + NaN NaN 128565.1 NaN 719 1177 1897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1899 21.612 NaN 114660 35 0 13186 0.261 + 8557 HASGLLQR 8 36 441.2514834974202 880.4884140616405 2 441.2513122558594 MULTI HCD FTMS 0 0 0 1897 45821.96875 0.5917082327095787 5 -0.04924774169921875 2 Unmodified _HASGLLQR_ REV__ENSG00000163554|ENST00000643759|SPTA1;REV__nc|ENSG00000163554|P02549-2|SPTA1;REV__SPTA1|p.E1174K|1|0.24|ENSG00000163554|chr1:158649905-158649905|C/T|missense_variant 37.97399986684836 0.256956040331741 1 [HS]Q{I|L}{I|L}RQ 7 -1 + 50.539 0 0 5.7398 5.7398 82.904 0 0 0 5.061216379505069 49.07771642040853 5.061216379505069 0.5237875363565792 0 1.3494850021680094 0 0.6109243748081782 0 [HS]Q{I|L}{I|L}RQ;[HS]Q{I|L}{I|L}QR;[HS][AG]{I|L}{I|L}RQ;[HS]Q{I|L}{I|L}[AG]R;[HS][AG]{I|L}{I|L}QR;[HS][AG]{I|L}{I|L}[AG]R;[HS]VV[VG]RQ;[HS]VV[VG]QR 5.7398;5.6803;4.6801;4.6206;4.6206;3.5687;0.95281;0.89332 -;-;-;-;-;-;-;- 117 NaN NaN 117106.4 NaN 720 1177 1897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1900 21.616 NaN 51331 35 0 10490 0.261 + 26395 SSSTVVSTQR 10 34 526.2717063609623 1050.5288597887245 2 526.7722778320312 MULTI HCD FTMS 0 0 0 1897 13441.0302734375 0.7335260074326746 5 -0.04924774169921875 3 Unmodified _SSSTVVSTQR_ ENSG00000116001|ENST00000433529|TIA1;nc|ENSG00000116001|P31483-3|TIA1 2.498486711656943 0.462078817294651 1 {[NV]|[RG]}YT 4 8 18.188 0 0 1.7313 0 0 0 570.3016451471311 570.3016451471311 5.511525224473813 0 0 0 0 0 0 0.5 0 {[NV]|[RG]}YT 1.7313 - 12 + NaN NaN 110350.4 NaN 721 1177 1897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1902 21.621 NaN 411440 35 0 67554 0.411 + 22536 QSEDGSHTL 9 90 487.21478286879574 972.4150128043915 2 487.2145690917969 MULTI HCD FTMS 0 0 0 1901 214513.25 0.34371749368913773 10 -0.10325241088867188 1 Unmodified _QSEDGSHTL_ ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C 123.45060196383646 0.0010021686353097689 1 {[QS]|[NT]}EDGSHT{I|L} 9 0 + 46.225 0 0 4.7536 4.7536 83.009 0 0 0 17.539281568736307 13.811508337315175 13.811508337315175 4.43143825037879 0 0.7971062485323517 0 1.6861818737241734 0 + + {[QS]|[NT]}EDGSHT{I|L};D[QT]DGSHT{I|L} 4.7536;4.2979 +;- + 560 + NaN NaN 214538.7 NaN 722 1178 1901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1904 21.629 NaN 274450 35 0 49224 0.327 + 10221 IHGVTAGR 8 44 405.7327098492286 809.4508667652573 2 405.7325439453125 MULTI HCD FTMS 0 0 0 1903 65624.171875 0.45948208495033865 8 -0.08696174621582031 1 Unmodified _IHGVTAGR_ KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant 18.13498045792455 0.4603629008820478 1 [SG]H{I|L}{I|L}QR 7 6 + 52.211 0 0 6.4502 6.4502 89.526 0 0 0 50.95179746953303 14.81508216873415 14.81508216873415 9.33053210369387 0 1.3494850021680094 0 0 0 [SG]H{I|L}{I|L}QR;[SG]H{I|L}{I|L}[AG]R 6.4502;5.2975 -;- 27 + NaN NaN 124399.1 NaN 723 1179 1903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1905 21.634 NaN 71973 35 0 15739 0.261 -1 NAAHQEALM 9 26 500.72955486890146 999.4445568046029 2 500.7298278808594 MULTI HCD FTMS 0 0 0 1903 39401.16796875 0.1018566207789587 34 -0.3590564727783203 2 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 17.11289562659939 0.2125047172822487 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2780661813592 0 650.2780661813592 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 30 + NaN NaN 90704.2 NaN 724 1179 1903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1907 21.639 NaN 108100 35 0 39019 0.327 + -1 NADPACLLS 9 30 480.7266528137145 959.438752694229 2 480.726318359375 MULTI HCD FTMS 0 0 0 1906 53513.88671875 0.9343799137532505 7 -0.07700538635253906 1 Carbamidomethyl (C) _NADPAC(Carbamidomethyl (C))LLS_ REV__ENSG00000163064|ENST00000295206|EN1 7.289230182591677 0.29575926068275815 1 {[QG]|[NA]}D 3 -1 32.447 0 0 3.3819 0 0 0 656.3085421197874 656.3085421197874 21.989700043360187 0 0 0 0 0.5 1.6989700043360187 0 0 {[QG]|[NA]}D 3.3819 + + 4 + NaN NaN 92758.4 NaN 725 1180 1906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1908 21.644 NaN 17905 35 0 5307.2 0.261 + -1 MQFMMKGQK 9 14 588.7665563341054 NaN 0 588.7666625976562 PEAK HCD FTMS 0 0 0 1906 3824.68603515625 0.5095416805821597 12 -0.1331024169921875 2 3 Oxidation (M) _M(Oxidation (M))QFM(Oxidation (M))M(Oxidation (M))KGQK_ REV__chr6:134448001-134454453|431|20.12|0.46|5.45|-|0|CT69,CT69|1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86573.5 NaN 726 1180 1906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1910 21.649 NaN 62432 35 0 8529.5 0.411 + 6222 FPERKEREM 9 34 407.8728753250739 1220.5967965754216 3 408.207275390625 MULTI HCD FTMS 0 0 0 1909 7737.80810546875 0.4131615917267519 -1 0.009954452514648438 1 Unmodified _FPERKEREM_ ENSG00000099795|ENST00000215565|NDUFB7 1.7422754331352037 0.3378093081622225 1 EPE 3 7 26.198 0 0 2.1463 0 0 847.4362110612311 0 847.4362110612311 0 26.197887582883936 0 0 0 0 0 0 0 EPE 2.1463 - 6 NaN NaN 97467.6 NaN 727 1181 1909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1913 21.665 NaN 21102 35 0 5373.3 0.327 -1 HRRPGWMR 8 13 556.2865506365342 NaN 0 556.286865234375 PEAK HCD FTMS 0 0 0 1912 1677.408935546875 0.2920989587916865 1 -0.00995635986328125 1 Oxidation (M) _HRRPGWM(Oxidation (M))R_ ENST00000533173.1_1_8:145676847-145677204:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99801.3 NaN 728 1183 1912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1914 21.669 NaN 31377 35 0 10941 0.261 + 12475 KQTKKQKVA 9 13 529.8376533615275 NaN 0 529.8380126953125 PEAK HCD FTMS 0 0 0 1912 3883.458984375 0.415131530734767 -25 0.25678443908691406 2 Unmodified _KQTKKQKVA_ ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101008.9 NaN 729 1183 1912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1916 21.675 NaN 25249 35 0 4276.3 0.327 + 25403 SEMFIKMY 8 19 524.7457923872006 1047.477031841201 2 524.745849609375 MULTI HCD FTMS 0 0 0 1915 9615.4013671875 0.4497687472335317 12 -0.1336688995361328 1 Unmodified _SEMFIKMY_ CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 78083.7 NaN 730 1184 1915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1917 21.679 NaN 37057 35 0 5646 0.261 -1 QSVQEDPRM 9 26 553.250717362552 1104.486881791904 2 553.250244140625 MULTI HCD FTMS 0 0 0 1915 11889.5751953125 0.3142360844048226 47 -0.5009193420410156 2 Oxidation (M) _QSVQEDPRM(Oxidation (M))_ ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5 1.6526216038709556 0.33848895094777925 1 M 1 -1 0.27759 0 0 0.025133 0 0 457.6971611881914 512.7423189752561 970.4394801634476 0 0 0 0 0 0 0 0 0 M 0.025133 + + 1 + NaN NaN 89856 NaN 731 1184 1915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1918 21.683 NaN 24067 35 0 5892.4 0.261 + 17981 MKYPRICI 8 17 512.2772974705586 1022.5400420079171 2 512.2767944335938 MULTI HCD FTMS 0 0 0 1915 11145.32421875 0.6222633157710391 -3 0.025526046752929688 3 Unmodified _MKYPRICI_ ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-2|TBCK;nc|ENSG00000145348|Q8TEA7-3|TBCK 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104548 NaN 732 1184 1915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1919 21.686 NaN 37465 35 0 11037 0.261 + 18492 MRGKRKLPE 9 20 557.8308116242646 NaN 0 558.2338256835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MRGKRKLPE_ REV__MPO|p.V657M|1|0.32|ENSG00000005381|chr17:58271716-58271716|C/T|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105120.3 NaN 733 1184 1915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1921 21.691 NaN 1657500 35 0 188270 0.327 + 150 AEGTHVIQR 9 79 505.77244627722763 1009.5303396212553 2 505.77252197265625 MULTI HCD FTMS 0 0 0 1920 984211.3125 0.30400459754564363 13 -0.14360427856445312 1 Unmodified _AEGTHVIQR_ REV__ENSG00000170631|ENST00000394909|ZNF16 99.79894945604345 0.0042691968066200965 1 EAGSH{I|L}{I|L}QR 9 -1 + 120.72 0 0 11.958 11.958 94.344 0 0 0 85.01062118803311 19.973024840566467 19.973024840566467 9.208187539523749 0 1.8653565665482859 1.2218487496163564 0.6747425010840047 0.9731975075880328 EAGSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}QR;EQSH{I|L}{I|L}[AG]R;{[CP]|[EA]}GSH{I|L}{I|L}QR;[TA][DG]H{I|L}{I|L}QR;{[CP]|[EA]}GSH{I|L}{I|L}[AG]R;[TA][DG]H{I|L}{I|L}[AG]R;[HS]G{[CP]|[EA]}{I|L}{I|L}QR;[HS]G{[CP]|[EA]}{I|L}{I|L}[AG]R 11.958;11.046;9.5554;8.638;5.4405;4.7189;4.5284;3.8067;3.7665;2.8543 -;-;-;-;-;-;-;-;-;- 489 + NaN NaN 346405.6 NaN 734 1185 1920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1922 21.696 NaN 186690 35 0 43302 0.261 + 27399 SYTRTSTN 8 41 465.2196121762972 928.4246714193944 2 465.2327575683594 MULTI HCD FTMS 0 0 0 1920 31424.03125 0.037315968453823664 44 -0.4606914520263672 2 Unmodified _SYTRTSTN_ REV__CON__ENSEMBL:ENSBTAP00000038253 2.577480529830294 0.5381683276125971 1 TP 2 -1 9.464 0 0 1.0194 0 0 166.05743616724436 561.2432345025999 727.3006706698443 0 0 0 0 0 0 0 0 0 TP 1.0194 - 15 + NaN NaN 109097.7 NaN 735 1185 1920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1923 21.699 NaN 25048 35 0 5964.5 0.261 -1 ARYRCCRS 8 11 564.7607260848066 1127.5068992364131 2 564.759765625 MULTI HCD FTMS 0 0 0 1920 1560.6263427734375 0.1430240634235568 39 -0.41370201110839844 3 2 Carbamidomethyl (C) _ARYRC(Carbamidomethyl (C))C(Carbamidomethyl (C))RS_ ENSG00000175646|ENST00000312511|PRM1 4.75600775471527 0.5349361699807423 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82167.3 NaN 736 1185 1920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1924 21.703 NaN 27048 35 0 11666 0.261 + 35682 YYKLNDLK 8 16 528.7896770050088 NaN 0 528.7565307617188 PEAK HCD FTMS 0 0 0 1920 4015.041259765625 1 0 0 4 Unmodified _YYKLNDLK_ CRTAP|p.A315D|1|0.62|ENSG00000170275|chr3:33132576-33132576|C/A|missense_variant;ENSG00000170275|ENST00000320954|CRTAP 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88455.4 NaN 737 1185 1920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1926 21.708 NaN 276180 35 0 43453 0.411 + 14017 KYTPPPHHI 9 66 545.2957967646022 1088.5770405960043 2 545.2954711914062 MULTI HCD FTMS 0 0 0 1925 153564.71875 0.9380914410224095 1 -0.008207321166992188 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 92.4914307365334 0.004460681868130716 1 KYTPP 5 4 52.607 0 0 4.8327 0 0 0 499.2440584772094 499.2440584772094 22.2500066109783 0 0 0 0 1.305462187404089 0 0.7614393726401688 0 + KYTPP 4.8327 + + 319 + NaN NaN 171621.4 NaN 738 1186 1925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1928 21.716 NaN 20924 35 0 4600.2 0.412 -1 FTMYLEHW 8 24 571.7514816877315 NaN 0 571.7518920898438 PEAK HCD FTMS 0 0 0 1927 6321.5908203125 0.9222704065204668 5 -0.05609703063964844 1 Oxidation (M) _FTM(Oxidation (M))YLEHW_ ENST00000503391.5_1_4:84200218-84200263:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97853.2 NaN 739 1187 1927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1930 21.724 NaN 60507 35 0 23986 0.327 + 33021 YCFEILYKQR 10 22 454.90055510840546 NaN 0 454.9007873535156 PEAK HCD FTMS 0 0 0 1929 26712.869140625 0.4114356211783415 423 -4.964862823486328 1 Unmodified _YCFEILYKQR_ REV__ENSG00000066185|ENST00000372565|ZMYND12;REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98042 NaN 740 1188 1929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1931 21.729 NaN 58945 35 0 13600 0.261 -1 SPSPMDPHM 9 21 515.7020570247579 1029.3895611163157 2 515.7019653320312 MULTI HCD FTMS 0 0 0 1929 14814.8525390625 0.59343603894275 13 -0.13376998901367188 2 2 Oxidation (M) _SPSPM(Oxidation (M))DPHM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91336.5 NaN 741 1188 1929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1932 21.732 NaN 33544 35 0 4905.6 0.261 + 32547 WHWHSSSH 8 23 532.2283011838589 1062.4420494345177 2 532.2281494140625 MULTI HCD FTMS 0 0 0 1929 22461.42578125 0.26753587415237173 16 -0.1649913787841797 3 Unmodified _WHWHSSSH_ REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|132|3|sense 0.7936320650641473 0.540814922690045 1 P 1 -1 2.4743 0 0 0.23288 0 0 468.7752536354927 493.57941614322505 962.3546697787177 0 0 0 0 0 0 0 0 0 P 0.23288 - 1 + NaN NaN 92717 NaN 742 1188 1929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1933 21.736 NaN 48730 35 0 9232.6 0.261 + 10315 ILMKFYTT 8 29 508.7776325087911 1015.5407120843822 2 508.77734375 MULTI HCD FTMS 0 0 0 1929 10828.984375 0.7523503144890914 1 -0.019887924194335938 4 Unmodified _ILMKFYTT_ REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88285.8 NaN 743 1188 1929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1934 21.739 NaN 37098 35 0 6693.9 0.261 + -1 TSMCATLKKT 10 21 550.277848872234 1098.541144811268 2 550.2779541015625 MULTI HCD FTMS 0 0 0 1929 5910.7138671875 0.6743010802282425 1 -0.019887924194335938 5 Oxidation (M) _TSM(Oxidation (M))CATLKKT_ REV__ENSG00000204624|ENST00000294484|DISP3;REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 78346.1 NaN 744 1188 1929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1936 21.744 NaN 491860 35 0 89027 0.327 + 2981 EAAGEVRAM 9 57 475.2240532534603 948.4335535737206 2 475.22381591796875 MULTI HCD FTMS 0 0 0 1935 293506.25 0.918779454095021 -4 0.05292701721191406 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 118.0683919894846 0.0016252157255221692 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 74.945 0 0 7.902 7.902 93.026 0 0 0 46.52880645020623 14.973024840566467 14.973024840566467 12.715299873086607 0 1.9846368802282015 0 0.3494850021680094 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F} 7.902;6.5613;6.2967;6.074;5.6137;5.247;4.9068;4.684;4.272;4.2238 +;-;-;-;-;-;-;-;-;- + 581 + NaN NaN 160030.8 NaN 745 1189 1935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1937 21.749 NaN 43312 35 0 10863 0.261 + -1 VIDTQPYCK 9 19 562.2739502325172 NaN 0 562.2737426757812 PEAK HCD FTMS 0 0 0 1935 12849.99609375 0.7040027649922449 -4 0.05292701721191406 2 Carbamidomethyl (C) _VIDTQPYC(Carbamidomethyl (C))K_ REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1 1.6526216038709556 0.28723846860855273 1 T 1 -1 6.9897 0 0 0.62267 0 0 327.1811879632781 691.2854097955686 1018.4665977588468 0 0 0 0 0 0 0 0 0 T 0.62267 + + 1 + NaN NaN 89101.6 NaN 746 1189 1935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1939 21.754 NaN 48889 35 0 14308 0.327 -1 NAAHQEALM 9 21 500.72955486890146 999.4445568046029 2 500.7294921875 MULTI HCD FTMS 0 0 0 1938 22640.5625 0.05852849820629248 45 -0.4607505798339844 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 9.38312468134398 0.279288223203164 1 A{I|L}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.6218 0 0 650.2736073224625 0 650.2736073224625 0 36.197887582883936 0 0 0 1 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.6218 + + 12 NaN NaN 88712.5 NaN 747 1190 1938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1940 21.759 NaN 43518 35 0 11744 0.261 + -1 LVRCLACM 8 25 483.7319210099363 965.4492890866726 2 483.731689453125 MULTI HCD FTMS 0 0 0 1938 19445.375 0.2072073459554863 62 -0.6791915893554688 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LVRCLACM(Oxidation (M))_ REV__ENST00000405995.5_1_9:134374820-134374865:+|nuORF 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2777 0 0 800.4032971206555 0 800.4032971206555 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2777 + + 2 + NaN NaN 82482.6 NaN 748 1190 1938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1942 21.764 NaN 22656 35 0 4093 0.411 + 624 APGPAPVWAW 10 25 526.2717063609623 1050.5288597887245 2 526.7718505859375 MULTI HCD FTMS 0 0 0 1941 4498.1845703125 0.24548232549384352 19 -0.1773681640625 1 Unmodified _APGPAPVWAW_ REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF 1.844237919475145 0.46554186016084764 1 T 1 -1 6.9897 0 0 0.66535 0 0 376.15314064985574 570.2993868463499 946.4525274962057 0 0 0 0 0 0 0 0 0 T 0.66535 - 3 + NaN NaN 95632.6 NaN 749 1191 1941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1944 21.772 NaN 41513 35 0 12028 0.327 + 33669 YKGPGFEY 8 18 480.7266528137145 959.438752694229 2 480.7257995605469 MULTI HCD FTMS 0 0 0 1943 14663.853515625 0.2560384046711237 19 -0.18927574157714844 1 Unmodified _YKGPGFEY_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82684.9 NaN 750 1192 1943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1945 21.777 NaN 28156 35 0 8235.4 0.261 + 21905 QDMNKIRF 8 13 526.2717063609623 1050.5288597887245 2 526.7726440429688 MULTI HCD FTMS 0 0 0 1943 4201.4462890625 0.22928823603271775 20 -0.1994152069091797 2 Unmodified _QDMNKIRF_ REV__ETS2|p.G5R|1|0.17|ENSG00000157557|chr21:38810047-38810047|G/A|missense_variant 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 73727 NaN 751 1192 1943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1947 21.782 NaN 8858.6 35 0 2048.6 0.412 + 23209 RFNNPDATRGG 11 14 602.7944315083222 NaN 0 603.2314453125 PEAK HCD FTMS 0 0 0 1946 3083.803466796875 1 0 0 1 Unmodified _RFNNPDATRGG_ REV__ENST00000535153.2_1_14:29253482-29253782:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97629.5 NaN 752 1193 1946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1949 21.79 NaN 39428 35 0 7558.7 0.327 -1 0 20 551.002176424146 2199.979599830184 4 551.2525634765625 MULTI HCD FTMS 0 0 0 1948 9958.693359375 0.8592575403569199 10 -0.09896278381347656 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.2493 0 0 1718.2605274198306 331.63511072330317 2049.895638143134 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.2493 - 1 + NaN NaN 108326.1 NaN 753 1194 1948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1950 21.795 NaN 10504 35 0 3668.3 0.261 + 5480 FITEFRSCYP 10 9 631.797341562592 NaN 0 631.7979125976562 PEAK HCD FTMS 0 0 0 1948 2426.220947265625 0.5003467455261419 1 -0.00994873046875 2 Unmodified _FITEFRSCYP_ ENST00000470742.5_1_21:35091133-35094274:+|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94496 NaN 754 1194 1948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1952 21.8 NaN 24128 35 0 5542.5 0.411 + 12173 KKKMKLCGL 9 23 524.8220720998467 NaN 0 524.7462158203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKKMKLCGL_ REV__ENST00000259400.10_2_9:102677486-102677543:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105697.4 NaN 755 1195 1951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1954 21.808 NaN 27867 35 0 4973.9 0.327 + 9707 HVVPHLHGQ 9 23 512.2772974705586 1022.5400420079171 2 512.2774047851562 MULTI HCD FTMS 0 0 0 1953 6059.69482421875 0.33832356240793754 9 -0.08914566040039062 1 Unmodified _HVVPHLHGQ_ ENST00000303277.6_1_4:1718988-1719900:-|nuORF 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82913.1 NaN 756 1196 1953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1955 21.813 NaN 33791 35 0 11065 0.261 + -1 QPTEVSRCE 9 18 553.250717362552 1104.486881791904 2 553.2512817382812 MULTI HCD FTMS 0 0 0 1953 4350.873046875 0.11499160294065874 59 -0.6854915618896484 2 Carbamidomethyl (C) _QPTEVSRC(Carbamidomethyl (C))E_ REV__ENST00000592070.1_1_X:133684070-133684235:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80696.1 NaN 757 1196 1953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1957 21.818 NaN 757460 35 0 88233 0.327 + 8516 HAGSELLQR 9 63 505.77244627722763 1009.5303396212553 2 505.7723388671875 MULTI HCD FTMS 0 0 0 1956 401569.09375 0.12403723588803758 25 -0.26535797119140625 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 88.90359156742426 0.00455469703666567 1 EAGSH{I|L}{I|L}QR 9 2 + 99.153 0 0 9.8217 9.8217 91.711 0 0 0 65.2083261065104 19.973024840566467 19.973024840566467 6.478174818886373 0 1.3684151806525389 0 0 1.2104093769761874 EAGSH{I|L}{I|L}QR;EQSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}[AG]R;{[{M(Oxidation (M))|F}H]|[RQ]}[YT]{I|L}{[CA]|SS}R;[PG][SG]H{I|L}{I|L}{[CA]|SS}R 9.8217;9.18;8.9096;8.2625;0.60917;0.46192 -;-;-;-;-;- 238 + NaN NaN 190008.9 NaN 758 1197 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1958 21.823 NaN 116410 35 0 24136 0.261 + 27400 SYTRTSTN 8 35 465.2196121762972 928.4246714193944 2 465.2326354980469 MULTI HCD FTMS 0 0 0 1956 19999.9609375 0.023749909917157926 56 -0.6319980621337891 2 Unmodified _SYTRTSTN_ REV__CON__ENSEMBL:ENSBTAP00000038253 2.577480529830294 0.5381683276125971 1 T 1 -1 5.4846 0 0 0.59074 0 0 166.06244105005686 658.3051241510374 824.3675652010943 0 0 0 0 0 0 0 0 0 T 0.59074 + + 9 + NaN NaN 95916.7 NaN 759 1197 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1959 21.826 NaN 142780 35 0 37884 0.261 + 4202 EVAPPEYHRK 10 26 409.21557638441413 1224.6248997534424 3 409.21527099609375 MULTI HCD FTMS 0 0 0 1956 33334.7890625 0.14268800285292202 -14 0.1535511016845703 3 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 1.214830529360525 0.46887341353674167 1 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.401435787599 825.401435787599 10.713337517843655 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 13 + NaN NaN 132260.3 NaN 760 1197 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1960 21.83 NaN 40928 35 0 11830 0.261 -1 WKMEFDTR 8 20 564.760853963688 1127.5071549941758 2 564.7604370117188 MULTI HCD FTMS 0 0 0 1956 7448.11279296875 0.2285628615428618 -19 0.19724273681640625 4 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 1 {M(Oxidation (M))|F}[KP] 3 -1 10.942 0 0 0.97047 0 0 737.3180409162125 0 737.3180409162125 0 10.942124970647031 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[KP] 0.97047 - 1 NaN NaN 101555.2 NaN 761 1197 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1962 21.835 NaN 181400 35 0 32146 0.327 + 14018 KYTPPPHHI 9 38 545.2957967646022 1088.5770405960043 2 545.2955932617188 MULTI HCD FTMS 0 0 0 1961 108939.8125 0.6654881832539161 13 -0.12672805786132812 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 78.14939416004806 0.006451203201226903 1 KYTPKPQ 7 4 55.495 0 0 5.098 0 0 0 243.11361108951408 243.11361108951408 29.526391799099727 0 0 0 0 1 0 0.7059771852360797 0 KYTPKPQ 5.098 - 82 + NaN NaN 114235.1 NaN 762 1198 1961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1964 21.843 NaN 28251 35 0 6145.3 0.411 -1 QGTPLTCSP 9 21 480.7266528137145 959.438752694229 2 480.7256774902344 MULTI HCD FTMS 0 0 0 1963 4783.58251953125 0.08352380468124537 26 -0.27065277099609375 1 Carbamidomethyl (C) _QGTPLTC(Carbamidomethyl (C))SP_ ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-2|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2;nc|ENSG00000151623|P08235-4|NR3C2 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97631.7 NaN 763 1199 1963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1967 21.858 NaN 10650 35 0 2355.5 0.411 + 24082 RYAKQFRCK 9 14 600.3252563476562 NaN 0 600.3252563476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RYAKQFRCK_ REV__ENSG00000087111|ENST00000308360|PIGS;REV__ENST00000577594.5_1_17:26890803-26898514:-|nuORF;REV__ENST00000584080.5_1_17:26887110-26897972:-|nuORF;REV__nc|ENSG00000087111|Q96S52-2|PIGS 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80599.3 NaN 764 1201 1966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1969 21.866 NaN 475750 35 0 77292 0.327 + 2982 EAAGEVRAM 9 59 475.2240532534603 948.4335535737206 2 475.2238464355469 MULTI HCD FTMS 0 0 0 1968 258773.21875 0.8100526535892727 9 -0.09552574157714844 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 99.75527289724121 0.004270341300239591 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 65.556 0 0 6.9121 6.9121 87.551 0 0 0 35.59054065780998 14.09256854528806 14.09256854528806 6.210149894766701 0 1.5471062485323515 0 0.3252574989159953 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F} 6.9121;6.2573;4.2787;4.1427;3.5957;3.0434 +;-;-;-;-;- + 422 + NaN NaN 153755.6 NaN 765 1202 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1970 21.871 NaN 51185 35 0 10220 0.261 -1 0 30 551.002176424146 2199.979599830184 4 551.2528076171875 MULTI HCD FTMS 0 0 0 1968 4731.24560546875 0.408222074430325 18 -0.20149612426757812 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90626.1 NaN 766 1202 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1972 21.876 NaN 48570 35 0 8853.4 0.327 -1 NAAHQEALM 9 27 500.72955486890146 999.4445568046029 2 500.7291259765625 MULTI HCD FTMS 0 0 0 1971 25471.701171875 0.06584732231583487 58 -0.7009716033935547 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 13.90604991867851 0.24021115267848145 1 A{I|L}{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.9715 0 0 650.278123924025 0 650.278123924025 0 39.69273760456403 0 0 0 1.3494850021680094 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.9715 + + 40 NaN NaN 85726 NaN 767 1203 1971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1973 21.88 NaN 31806 35 0 4911.3 0.261 + 334 AGKRPWTESPP 11 16 613.3201110788484 1224.6256692244967 2 613.8222045898438 MULTI HCD FTMS 0 0 0 1971 5655.66455078125 0.39246413226868226 -5 0.04120826721191406 2 Unmodified _AGKRPWTESPP_ REV__ENST00000291906.4_1_9:131482996-131483179:+|nuORF 0.40826533853263924 0.41713015341995335 1 T 1 -1 5.4846 0 0 0.44786 0 0 767.5116078004718 353.03537987068404 1120.5469876711559 0 0 0 0 0 0 0 0 0 T 0.44786 + + 1 + NaN NaN 101851.5 NaN 768 1203 1971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1974 21.884 NaN 39435 35 0 6687 0.261 + -1 CVRRCMSM 8 24 558.2339009185854 NaN 0 558.2337036132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VRRC(Carbamidomethyl (C))MSM(Oxidation (M))_ REV__ENSG00000177200|ENST00000447540|CHD9;REV__nc|ENSG00000177200|Q3L8U1-2|CHD9;REV__nc|ENSG00000177200|Q3L8U1-3|CHD9 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89151.2 NaN 769 1203 1971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1976 21.89 NaN 92181 35 0 10700 0.411 + 19380 NPEHASVAM 9 44 486.21634385396106 970.4181347747221 2 486.2161560058594 MULTI HCD FTMS 0 0 0 1975 58589.35546875 0.42407937619691244 31 -0.3257732391357422 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 62.57269311338072 0.013982455292112035 1 ESVA{M(Oxidation (M))|F} 5 4 56.542 0 0 5.8266 0 0 419.201952049025 0 419.201952049025 0 46.36500636031869 0 0 0 1.805462187404089 0 0.805462187404089 0 ESVA{M(Oxidation (M))|F} 5.8266 - 103 NaN NaN 115460.2 NaN 770 1204 1975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1978 21.898 NaN 41007 35 0 5463.6 0.327 -1 0 23 483.7319210099363 965.4492890866726 2 483.7314758300781 MULTI HCD FTMS 0 0 0 1977 18525.50390625 0.19740532115745035 77 -0.9055957794189453 1 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.1298 0 0 701.3346424787125 0 701.3346424787125 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 3.1298 - 8 NaN NaN 83625.8 NaN 771 1205 1977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1979 21.902 NaN 46415 35 0 10293 0.261 + 2565 DTGNIGQER 9 26 495.23595828460327 988.4573636360066 2 495.235595703125 MULTI HCD FTMS 0 0 0 1977 18471.75390625 0.4902513083164742 -6 0.05500602722167969 2 Unmodified _DTGNIGQER_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 2.9952420565917617 0.3283108881486655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84046.8 NaN 772 1205 1977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1981 21.908 NaN 20748 35 0 3465.1 0.411 -1 RPMRCWGW 8 15 574.7661655553981 1147.517778177596 2 574.765380859375 MULTI HCD FTMS 0 0 0 1980 5410.2587890625 0.18713775259655466 -11 0.1072235107421875 1 Carbamidomethyl (C) _RPMRC(Carbamidomethyl (C))WGW_ TXNDC15|p.R11Afs*82|1|0.32|ENSG00000113621|chr5:134874455-134874455|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88160.6 NaN 773 1206 1980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1983 21.916 NaN 64349 35 0 9950.9 0.327 + 28730 TSTESISTR 9 23 491.24586323458055 980.4771735359611 2 491.2457275390625 MULTI HCD FTMS 0 0 0 1982 18655.33203125 0.715369563631554 2 -0.018007278442382812 1 Unmodified _TSTESISTR_ ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12 5.731851221503515 0.3075653528928475 1 {[MG]|[TS]}{[ET]|[MV]}{I|L} 5 4 3.4679 0 0 0.35369 0 0 0 446.18354211978755 446.18354211978755 3.4678748622465596 0 0 0 0 0 0 0.5 0 {[MG]|[TS]}{[ET]|[MV]}{I|L} 0.35369 - 3 + NaN NaN 91191.5 NaN 774 1207 1982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1984 21.92 NaN 50643 35 0 10144 0.261 + 27541 TAAGGFQQR 9 14 468.23787008573356 934.4611872382671 2 468.237548828125 MULTI HCD FTMS 0 0 0 1982 23143.283203125 0.8384158816559925 -3 0.026220321655273438 2 Unmodified _TAAGGFQQR_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000530013.5_1_11:33775932-33796043:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 10.823927491677226 0.26684000660059787 1 [TA]A 3 6 30.686 0 0 3.2839 0 0 0 688.3174669742704 688.3174669742704 30.686362358410122 0 0 0 0 0.5 1.5228787452803376 0 0 + [TA]A 3.2839 + + 6 + NaN NaN 102297.8 NaN 775 1207 1982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1986 21.926 NaN 59867 35 0 11983 0.411 + 2622 DVAQPDQTR 9 36 515.2517426365606 1028.4889323399211 2 515.25146484375 MULTI HCD FTMS 0 0 0 1985 13685.943359375 0.35662440023997527 -7 0.06740188598632812 1 Unmodified _DVAQPDQTR_ ENSG00000105202|ENST00000221801|FBL 15.248480904072842 0.22861284681709862 1 [DV]AQ 4 5 48.188 0 0 4.6853 0 0 0 612.2747415088141 612.2747415088141 48.187587626244124 0 0 0 0 1.5 1.6989700043360187 0 0 + [DV]AQ 4.6853 + + 33 NaN NaN 100572.8 NaN 776 1208 1985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1988 21.934 NaN 53406 35 0 7802.7 0.411 -1 EPHPADPGM 9 37 483.70317684928676 965.3918007653735 2 483.70269775390625 MULTI HCD FTMS 0 0 0 1987 12133.34375 0.6329284005116185 -2 0.018007278442382812 1 Oxidation (M) _EPHPADPGM(Oxidation (M))_ ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 12.531546534597751 0.2520865569484384 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.1721 0 0 701.2776172710361 0 701.2776172710361 0 10.154856465551985 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 2.1721 - 15 + NaN NaN 96943.1 NaN 777 1209 1987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1990 21.942 NaN 480100 35 0 51484 0.327 + 8517 HAGSELLQR 9 53 505.77244627722763 1009.5303396212553 2 505.7723083496094 MULTI HCD FTMS 0 0 0 1989 200782.5 0.06201798570234193 38 -0.4348487854003906 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 58.678817012210395 0.019429721296335044 1 EAGSH{I|L}{I|L}QR 9 2 + 85.53 0 0 8.4723 8.4723 90.249 0 0 0 64.10371450864984 16.478174818886373 16.478174818886373 6.478174818886373 0 1.3441876774005248 0 0 0.3494850021680094 EAGSH{I|L}{I|L}QR;EQSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}[AG]R;{[{M(Oxidation (M))|F}H]|[RQ]}[YT]{I|L}{[CA]|SS}R 8.4723;7.8306;7.5602;6.9131;0.55161 -;-;-;-;- 163 + NaN NaN 166226.1 NaN 778 1210 1989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1991 21.946 NaN 83688 35 0 20151 0.262 + 7752 FYMQRRRF 8 36 401.8778357069083 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 1989 29499.333984375 0.41707127506957603 426 -5.093658447265625 2 Unmodified _FYMQRRRF_ REV__ENST00000370076.2_1_1:107685885-107690770:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105716.7 NaN 779 1210 1989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1992 21.95 NaN 26599 35 0 5076.9 0.261 -1 TQERNPMDV 9 14 553.250717362552 1104.486881791904 2 553.2500610351562 MULTI HCD FTMS 0 0 0 1989 5087.15234375 0.13445113109684995 72 -0.8614711761474609 3 Oxidation (M) _TQERNPM(Oxidation (M))DV_ ENST00000437590.2_1_10:43977899-43978070:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83175.3 NaN 780 1210 1989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1993 21.953 NaN 21052 35 0 3733.8 0.262 + -1 CAPCRYPKQ 9 17 590.2749408837365 1178.5353288342728 2 590.273681640625 MULTI HCD FTMS 0 0 0 1989 2076.774658203125 0.21226625174637134 -13 0.12334442138671875 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))APC(Carbamidomethyl (C))RYPKQ_ REV__ENSG00000167394|ENST00000300849|ZNF668;REV__nc|ENSG00000167394|Q96K58-2|ZNF668 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98642.7 NaN 781 1210 1989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1994 21.956 NaN 72063 35 0 15930 0.264 -1 AKASEDWMCS 10 30 400.82623291015625 NaN 0 400.82623291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _AKASEDWM(Oxidation (M))C(Carbamidomethyl (C))S_ ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98153.7 NaN 782 1210 1989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1996 21.962 NaN 630550 35 0 184330 0.327 + 4203 EVAPPEYHRK 10 33 409.21557638441413 1224.6248997534424 3 409.2155456542969 MULTI HCD FTMS 0 0 0 1995 233620.125 1 0 0 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 2.4347853303010236 0.4624159988330927 1 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.4004943919265 825.4004943919265 7.614393726401687 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 9 + NaN NaN 177284.8 NaN 783 1211 1995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1997 21.966 NaN 73032 35 0 14589 0.261 -1 HPYQPDPKM 9 22 564.760853963688 1127.5071549941758 2 564.7611083984375 MULTI HCD FTMS 0 0 0 1995 26037.46875 0.7990209775623909 -5 0.0540924072265625 2 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 10.073929032068715 0.27331982688540024 1 R{[ES]|[DT]|[{I|L}C]} 3 -1 18.2 0 0 1.6142 0 0 737.3141815134888 0 737.3141815134888 0 18.199849938126892 0 0 0 0.9247425010840047 0 0 0 R{[ES]|[DT]|[{I|L}C]} 1.6142 - 4 NaN NaN 87066.8 NaN 784 1211 1995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 1999 21.972 NaN 89578 35 0 14297 0.327 + 14019 KYTPPPHHI 9 35 545.2957967646022 1088.5770405960043 2 545.2955932617188 MULTI HCD FTMS 0 0 0 1998 56132.3515625 0.3428995865317672 27 -0.2826499938964844 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 49.93300154707207 0.03166451819912738 1 KYTPK 5 5 46.414 0 0 4.2638 0 0 0 468.21274744205317 468.21274744205317 21.197887582883936 0 0 0 0 1 0 0.6861818737241735 0 KYTPK 4.2638 - 18 + NaN NaN 94171 NaN 785 1212 1998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2000 21.976 NaN 30039 35 0 3738.4 0.261 -1 GCHSSKSTTV 10 22 553.250717362552 1104.486881791904 2 553.25146484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))GC(Carbamidomethyl (C))HSSKSTTV_ ENSG00000277639|ENST00000619363|CHD9NB 0.35063188157827746 0.47344775436540215 1 Y 1 -1 6.9897 0 0 0.63285 0 0 174.59712456709764 763.8059176080686 938.4030421751663 0 0 0 0 0 0 0 0 0 Y 0.63285 - 1 + NaN NaN 85699.6 NaN 786 1212 1998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2001 21.98 NaN 35335 35 0 4618.6 0.261 -1 RHSWECMDDVS 11 32 479.8550865752127 NaN 0 479.85516357421875 PEAK HCD FTMS 0 0 0 1998 2009.59326171875 0.23574591513404358 -5 0.05622100830078125 3 Carbamidomethyl (C),Oxidation (M) _RHSWEC(Carbamidomethyl (C))M(Oxidation (M))DDVS_ ENST00000466018.5_1_7:116594324-116594483:+|nuORF 0.09484139111097674 0.34185110575506755 1 P 1 -1 2.4743 0 0 0.25835 0 0 530.0291295939817 327.59028040103755 857.6194099950192 0 0 0 0 0 0 0 0 0 P 0.25835 - 1 + NaN NaN 87593.3 NaN 787 1212 1998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2002 21.983 NaN 29915 35 0 11277 0.261 + 22106 QIFSGTSKR 9 17 512.2829907073562 1022.5514284815125 2 512.2823486328125 MULTI HCD FTMS 0 0 0 1998 7538.19873046875 0.8206296226170177 -5 0.05622100830078125 4 Unmodified _QIFSGTSKR_ ENSG00000123609|ENST00000243346|NMI 1.4819007175156935 0.3397831423917744 1 [Q{I|L}]{M(Oxidation (M))|F} 3 6 10.458 0 0 1.0227 0 0 0 631.3170260065061 631.3170260065061 10.45757490560675 0 0 0 0 0 0 0 0 + [Q{I|L}]{M(Oxidation (M))|F} 1.0227 + + 1 + NaN NaN 111055.5 NaN 788 1212 1998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2004 21.989 NaN 18903 35 0 5132.3 0.326 + 19473 NPTFEWYW 8 20 571.7508081360238 NaN 0 571.7508544921875 PEAK HCD FTMS 0 0 0 2003 1332.204833984375 0.22464864112691735 1 -0.0076198577880859375 1 Unmodified _NPTFEWYW_ ENSG00000164187|ENST00000296603|LMBRD2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83507.8 NaN 789 1213 2003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2006 21.996 NaN 291230 35 0 53136 0.327 + 2983 EAAGEVRAM 9 52 475.2240532534603 948.4335535737206 2 475.2237854003906 MULTI HCD FTMS 0 0 0 2005 169981.015625 0.5321013257552598 21 -0.2191295623779297 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 72.96794272382148 0.008127836904478181 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 66.45 0 0 7.0063 7.0063 88.012 0 0 0 38.03395642852614 14.973024840566467 14.973024840566467 6.962724883926654 0 1.7856668758921828 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}[RD]V[VG]A{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F} 7.0063;6.2722;4.7911;4.5814;4.1081;3.5558;3.2695;3.0597;2.7166;2.5864 +;-;-;-;-;-;-;-;-;- + 293 + NaN NaN 129022.8 NaN 790 1214 2005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2007 22 NaN 85404 35 0 9066.5 0.261 + 2570 DTIENVKAK 9 40 509.28236356763455 1016.5501742020691 2 509.2820129394531 MULTI HCD FTMS 0 0 0 2005 32222.873046875 0.1883113839846229 -9 0.09842491149902344 2 Unmodified _DTIENVKAK_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant 14.405379775768559 0.2358970535022398 1 {[ES]|[DT]|[{I|L}C]}{I|L}E 4 5 20.445 0 0 2.0112 0 0 0 555.3264254205686 555.3264254205686 17.346368802282015 0 0 0 0 0.4247425010840047 0 0 0 + {[ES]|[DT]|[{I|L}C]}{I|L}E 2.0112 + + 11 + NaN NaN 102599.2 NaN 791 1214 2005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2008 22.004 NaN 42281 35 0 10288 0.261 -1 NAAHQEALM 9 23 500.729585508408 999.444618083616 2 500.72943115234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 9.38312468134398 0.279288223203164 1 A{I|L}{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.5465 0 0 650.2770252912125 0 650.2770252912125 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.5465 + + 12 NaN NaN 98968.9 NaN 792 1214 2005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2009 22.007 NaN 59870 35 0 8879.8 0.261 -1 0 23 469.3288034240318 468.3215269574318 1 469.328369140625 MULTI HCD FTMS 0 0 0 2005 13475.76171875 0.9461015727816456 -4 0.05430030822753906 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88668.5 NaN 793 1214 2005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2011 22.013 NaN 18643 35 0 6664.1 0.327 -1 SCVFWLHKC 9 11 590.2749408837365 1178.5353288342728 2 590.2757568359375 MULTI HCD FTMS 0 0 0 2010 7648.828125 0.7817834592370954 -9 0.10496902465820312 1 Carbamidomethyl (C) _SCVFWLHKC(Carbamidomethyl (C))_ chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|19;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|18;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|17;chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|19;chr5:90822097-90965415|211|21.16|0.18|6.88|+|2|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|17;chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|18;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|307|3|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|239|2|anti-sense;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|74|1|anti-sense 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84145.1 NaN 794 1215 2010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2013 22.02 NaN 33456 35 0 4586.7 0.327 + 2566 DTGNIGQER 9 20 495.23595828460327 988.4573636360066 2 495.2357482910156 MULTI HCD FTMS 0 0 0 2012 23812.169921875 0.6319891179420424 5 -0.055568695068359375 1 Unmodified _DTGNIGQER_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 7.608950283845883 0.29333554423920943 1 {[ES]|[DT]|[{I|L}C]}[NG]{I|L} 5 4 12.983 0 0 1.3135 0 0 0 485.2111532690722 485.2111532690722 12.98332479720628 0 0 0 0 1 0 0 0 + {[ES]|[DT]|[{I|L}C]}[NG]{I|L} 1.3135 + + 4 NaN NaN 95859.7 NaN 795 1216 2012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2014 22.025 NaN 34680 35 0 8219.4 0.261 + 22212 QLRHHVPH 8 20 512.2829907073562 1022.5514284815125 2 512.283935546875 MULTI HCD FTMS 0 0 0 2012 6737.6982421875 0.7334848766251418 -1 0.0076084136962890625 2 Unmodified _QLRHHVPH_ REV__ENST00000381278.3_1_22:43089799-43091637:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102254.2 NaN 796 1216 2012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2016 22.03 NaN 66371 35 0 20842 0.327 + -1 RRCRRWRGC 9 32 454.90055510840546 NaN 0 454.9006042480469 PEAK HCD FTMS 0 0 0 2015 29171.560546875 0.44930475536572406 452 -5.481191635131836 1 2 Carbamidomethyl (C) _RRC(Carbamidomethyl (C))RRWRGC(Carbamidomethyl (C))_ REV__ENSG00000161714|ENST00000619929|PLCD3;REV__ENST00000544446.1_1_17:43206606-43209831:-|nuORF 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92912.5 NaN 797 1217 2015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2017 22.034 NaN 42003 35 0 8023.2 0.261 -1 RPMRCWGW 8 16 574.7661655553981 1147.517778177596 2 574.7662963867188 MULTI HCD FTMS 0 0 0 2015 28910.568359375 1 0 0 2 Carbamidomethyl (C) _RPMRC(Carbamidomethyl (C))WGW_ TXNDC15|p.R11Afs*82|1|0.32|ENSG00000113621|chr5:134874455-134874455|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.47795 0 0 97.97728111577028 899.5064180963499 997.4836992121202 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.47795 + + 2 + NaN NaN 92049 NaN 798 1217 2015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2018 22.038 NaN 34091 35 0 4178.3 0.261 + -1 LMSGELMPKV 10 20 560.7909513781278 1119.5673498230556 2 560.791259765625 MULTI HCD FTMS 0 0 0 2015 13093.525390625 0.8226234407281913 -2 0.01753997802734375 3 Oxidation (M) _LM(Oxidation (M))SGELMPKV_ REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92454.7 NaN 799 1217 2015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2019 22.041 NaN 47502 35 0 6242.3 0.261 + 20611 PEQSSTAHGA 10 32 492.7227257302388 983.4308985272776 2 492.7225646972656 MULTI HCD FTMS 0 0 0 2015 12751.173828125 0.8014458333011091 -1 0.009931564331054688 4 Unmodified _PEQSSTAHGA_ REV__ENSG00000144224|ENST00000272638|UBXN4 1.4819007175156935 0.4674597685733628 1 Q 1 -1 2.4743 0 0 0.25159 0 0 491.65106561887757 360.6930330865844 852.344098705462 0 0 0 0 0 0 0 0 0 Q 0.25159 + + 5 + NaN NaN 86852.5 NaN 800 1217 2015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2020 22.045 NaN 34950 35 0 8695.6 0.261 + -1 YRGSAGCAEGS 11 16 557.7325664114362 NaN 0 557.7324829101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _YRGSAGC(Carbamidomethyl (C))AEGS_ REV__ENST00000295981.7_1_3:9959010-9959169:+|nuORF;REV__ENST00000451271.5_1_3:9958923-9975274:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99439.1 NaN 801 1217 2015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2023 22.058 NaN 17103 35 0 3151.6 0.327 -1 0 14 624.2356384275296 623.2283619609295 1 624.2362670898438 MULTI HCD FTMS 0 0 0 2022 6333.109375 0.6149972911155133 16 -0.15744590759277344 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86202.5 NaN 802 1219 2022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2024 22.062 NaN 56764 35 0 13679 0.263 -1 0 22 479.2447574491974 956.4749619651948 2 479.24505615234375 MULTI HCD FTMS 0 0 0 2022 14494.193359375 0.3736704811363811 -8 0.09602546691894531 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87555.2 NaN 803 1219 2022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2026 22.068 NaN 331760 35 0 30136 0.411 + 8518 HAGSELLQR 9 65 505.77244627722763 1009.5303396212553 2 505.7723693847656 MULTI HCD FTMS 0 0 0 2025 152797.484375 0.047196305461494725 48 -0.5842018127441406 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 68.08070601005525 0.009709267492204555 1 EAGSH{I|L}{I|L}QR 9 2 + 92.916 0 0 9.2039 9.2039 91.223 0 0 0 72.79265846719822 19.532796692927263 19.532796692927263 6.478174818886373 0 1.360924374808178 0 0 0.5941876774005248 EAGSH{I|L}{I|L}QR;EQSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}[AG]R 9.2039;8.5622;8.2918;7.6447 -;-;-;- 154 + NaN NaN 200232.9 NaN 804 1220 2025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2028 22.076 NaN 17684 35 0 5023.1 0.411 + 22213 QLRHHVPH 8 17 512.2829907073562 1022.5514284815125 2 512.78466796875 MULTI HCD FTMS 0 0 0 2027 1760.7850341796875 0.30296048453006813 7 -0.06302833557128906 1 Unmodified _QLRHHVPH_ REV__ENST00000381278.3_1_22:43089799-43091637:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99044.3 NaN 805 1221 2027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2030 22.084 NaN 241670 35 0 65699 0.411 + 4204 EVAPPEYHRK 10 45 409.21557638441413 1224.6248997534424 3 409.2155456542969 MULTI HCD FTMS 0 0 0 2029 73763.1328125 0.3157396342138761 11 -0.11324119567871094 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 4.406150317652783 0.4519812505573615 1 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 18.698 0 0 1.5268 0 0 0 825.4012277376231 825.4012277376231 11.619543704721593 0 0 0 0 0.25 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.5268 + + 11 + NaN NaN 169104.4 NaN 806 1222 2029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2032 22.092 NaN 60318 35 0 10013 0.327 + 14020 KYTPPPHHI 9 28 545.2957967646022 1088.5770405960043 2 545.295654296875 MULTI HCD FTMS 0 0 0 2031 25786.013671875 0.15752080894995793 38 -0.4853363037109375 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 22.736283301280096 0.1639198954644489 1 KYTP 4 5 33.928 0 0 3.1167 0 0 0 596.2955416315061 596.2955416315061 7.95880017344075 0 0 0 0 0.5 0 0 0 + KYTP 3.1167 + + 14 + NaN NaN 105002.5 NaN 807 1223 2031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2033 22.096 NaN 74141 35 0 15309 0.261 -1 HPYQPDPKM 9 22 564.760853963688 1127.5071549941758 2 564.7606811523438 MULTI HCD FTMS 0 0 0 2031 28432.484375 0.8725176659055963 7 -0.07373619079589844 2 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 10.073929032068715 0.27331982688540024 1 R{[ES]|[DT]|[{I|L}C]} 3 -1 18.952 0 0 1.6809 0 0 737.3142052385732 0 737.3142052385732 0 18.952424927286845 0 0 0 1 0 0 0 R{[ES]|[DT]|[{I|L}C]} 1.6809 - 5 NaN NaN 91882.3 NaN 808 1223 2031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2034 22.1 NaN 57425 35 0 8999.5 0.261 + 2623 DVAQPDQTR 9 36 515.2517426365606 1028.4889323399211 2 515.2514038085938 MULTI HCD FTMS 0 0 0 2031 12996.501953125 0.3386591331372083 8 -0.08390617370605469 3 Unmodified _DVAQPDQTR_ ENSG00000105202|ENST00000221801|FBL 11.494710602746466 0.2610445893512368 1 [DV]AQ 4 5 42.435 0 0 4.126 0 0 0 612.2749808945822 612.2749808945822 42.43501263708417 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + [DV]AQ 4.126 + + 19 + NaN NaN 107238.2 NaN 809 1223 2031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2036 22.105 NaN 25516 35 0 5379.9 0.411 -1 LGHWYPWM 8 22 553.2506348197019 NaN 0 553.2504272460938 PEAK HCD FTMS 0 0 0 2035 1602.063720703125 0.24709462819412037 -4 0.0373992919921875 1 Oxidation (M) _LGHWYPWM(Oxidation (M))_ ENST00000423999.2_1_12:122503214-122503280:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90122 NaN 810 1224 2035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2039 22.121 NaN 178840 35 0 26841 0.327 + 2571 DTIENVKAK 9 45 509.28236356763455 1016.5501742020691 2 509.2820739746094 MULTI HCD FTMS 0 0 0 2038 150642.875 0.8803612340031137 3 -0.031240463256835938 1 Unmodified _DTIENVKAK_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant 76.82478488871298 0.006879825292024087 1 DT{I|L}ENVKAK 9 0 + 83.14 0 0 8.1786 8.1786 91.734 0 0 0 54.640012553530966 8.256886463274284 8.256886463274284 9.208187539523749 0 1.555462187404089 1.3010299956639813 0.4247425010840047 0.3494850021680094 + + DT{I|L}ENVKAK;DT{I|L}EGGVKAK 8.1786;7.2728 +;- + 72 + NaN NaN 120703.5 NaN 811 1226 2038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2040 22.125 NaN 212810 35 0 34369 0.261 -1 EAAGEVRAM 9 50 475.2240532534603 948.4335535737206 2 475.22381591796875 MULTI HCD FTMS 0 0 0 2038 125307.875 0.3922584305659833 33 -0.42836952209472656 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 27.628801355627647 0.12213550946336599 1 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 -1 + 51.846 0 0 5.4665 5.4665 83.739 0 0 0 23.429862658764264 14.973024840566467 14.973024840566467 3.4678748622465605 0 0.3252574989159953 0 0 0 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F} 5.4665;5.1009 +;- + 130 + NaN NaN 120883.3 NaN 812 1226 2038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2042 22.131 NaN 49941 35 0 10002 0.411 -1 NAAHQEALM 9 22 500.729585508408 999.444618083616 2 500.7295227050781 MULTI HCD FTMS 0 0 0 2041 27552.927734375 0.11592148146794433 -26 0.2725563049316406 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 22.736283301280096 0.1639198954644489 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2766320990441 0 650.2766320990441 0 25.713337517843655 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 31 + NaN NaN 101306 NaN 813 1227 2041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2044 22.139 NaN 89804 35 0 22839 0.327 + 32523 WGWEWRRK 8 32 401.8778357069083 NaN 0 401.87786865234375 PEAK HCD FTMS 0 0 0 2043 35249.5859375 0.49837022627069333 444 -5.394397735595703 1 Unmodified _WGWEWRRK_ REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91512.5 NaN 814 1228 2043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2045 22.143 NaN 56267 35 0 7978.8 0.261 + 30925 VRIVPLKI 8 32 469.3298363191439 936.6451197050878 2 469.32861328125 MULTI HCD FTMS 0 0 0 2043 17128.171875 1 0 0 2 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96126.2 NaN 815 1228 2043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2046 22.147 NaN 19681 35 0 4291 0.261 + -1 WMYYFQVI 8 22 583.2724776666846 NaN 0 583.2724609375 PEAK HCD FTMS 0 0 0 2043 1675.9595947265625 0.25387290649255245 -2 0.017963409423828125 3 Oxidation (M) _WM(Oxidation (M))YYFQVI_ REV__ENSG00000149480|ENST00000278823|MTA2;REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant;REV__nc|ENSG00000149480|O94776-2|MTA2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86742.5 NaN 816 1228 2043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2048 22.152 NaN 50547 35 0 6090.8 0.327 -1 NPEHASVAM 9 27 486.21634385396106 970.4181347747221 2 486.21600341796875 MULTI HCD FTMS 0 0 0 2047 32054.142578125 0.23201314778600957 56 -0.6835689544677734 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 19.256988751693697 0.19398022840297344 1 VA{M(Oxidation (M))|F} 3 -1 39.693 0 0 4.0903 0 0 635.2652455060562 0 635.2652455060562 0 39.69273760456403 0 0 0 1.3494850021680094 0 0 0 VA{M(Oxidation (M))|F} 4.0903 + + 20 NaN NaN 89881.8 NaN 817 1229 2047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2049 22.157 NaN 17409 35 0 4091.2 0.261 -1 SCVFWLHKC 9 16 590.2749408837365 1178.5353288342728 2 590.2742309570312 MULTI HCD FTMS 0 0 0 2047 4579.1376953125 0.4680317101208738 5 -0.055110931396484375 2 Carbamidomethyl (C) _SCVFWLHKC(Carbamidomethyl (C))_ chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|19;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|18;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|17;chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|19;chr5:90822097-90965415|211|21.16|0.18|6.88|+|2|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|17;chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|18;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|307|3|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|239|2|anti-sense;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|74|1|anti-sense 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85654.4 NaN 818 1229 2047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2050 22.16 NaN 75923 35 0 11592 0.264 -1 0 40 400.3498840332031 NaN 0 400.3498840332031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88770.5 NaN 819 1229 2047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2052 22.166 NaN 134390 35 0 31435 0.327 + 3117 EAMNMYNNNN 10 42 405.49015100595454 1213.4486236180637 3 405.4900817871094 MULTI HCD FTMS 0 0 0 2051 34675.203125 0.26131688478468035 -11 0.10782623291015625 1 Unmodified _EAMNMYNNNN_ REV__ENSG00000103460|ENST00000219746|TOX3;REV__nc|ENSG00000103460|O15405-2|TOX3;REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant 0.4007161486938917 0.47318265037741464 1 {[CP]|[EA]}D 3 -1 10.458 0 0 0.86181 0 0 0 895.3189933029731 895.3189933029731 3.4678748622465623 0 0 0 0 0 0 0 0 {[CP]|[EA]}D 0.86181 - 8 + NaN NaN 104038.4 NaN 820 1230 2051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2053 22.17 NaN 21603 35 0 4538.3 0.261 -1 RPMRCWGW 8 14 574.7661655553981 1147.517778177596 2 574.7659301757812 MULTI HCD FTMS 0 0 0 2051 7997.2666015625 0.2766208710306859 13 -0.14579200744628906 2 Carbamidomethyl (C) _RPMRC(Carbamidomethyl (C))WGW_ TXNDC15|p.R11Afs*82|1|0.32|ENSG00000113621|chr5:134874455-134874455|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84096.2 NaN 821 1230 2051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2055 22.176 NaN 14370 35 0 2295.4 0.411 + -1 RKGIAYYDSC 10 21 616.7902264149626 1231.565899896725 2 616.7901000976562 MULTI HCD FTMS 0 0 0 2054 6785.0322265625 0.5585664581624629 -8 0.08390617370605469 1 Carbamidomethyl (C) _RKGIAYYDSC(Carbamidomethyl (C))_ REV__ENSG00000127951|ENST00000248598|FGL2 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83921.7 NaN 822 1231 2054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2057 22.184 NaN 76175 35 0 25562 0.327 -1 GNGHLVMLT 9 30 479.2447574491974 956.4749619651948 2 479.244384765625 MULTI HCD FTMS 0 0 0 2056 28382.78515625 0.7317281288003876 5 -0.04944038391113281 1 Oxidation (M) _GNGHLVM(Oxidation (M))LT_ ENST00000394808.2_1_6:53072259-53072454:-|nuORF 4.3292370932331545 0.3181982124262546 1 {NN|[MP]|[D{I|L}]|[EV]}H 3 -1 10.458 0 0 1.0933 0 0 0 588.3019503229124 588.3019503229124 9.973024840566469 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}H 1.0933 - 4 + NaN NaN 107551.6 NaN 823 1232 2056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2058 22.188 NaN 33226 35 0 3716.8 0.261 -1 VAMLSHRC 8 26 495.23595828460327 988.4573636360066 2 495.2350769042969 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _VAM(Oxidation (M))LSHRC(Carbamidomethyl (C))_ ADAR|p.I844V|1|0.57|ENSG00000160710|chr1:154589895-154589895|T/C|missense_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82158.6 NaN 824 1232 2056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2059 22.192 NaN 27749 35 0 7611.2 0.261 + -1 MRRARRKQLCC 11 15 512.2711181640625 NaN 0 512.2711181640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _MRRARRKQLC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000442383.1_1_20:42839978-42853586:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79099.8 NaN 825 1232 2056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2061 22.197 NaN 288640 35 0 27575 0.327 + 8519 HAGSELLQR 9 45 505.77244627722763 1009.5303396212553 2 505.7722473144531 MULTI HCD FTMS 0 0 0 2060 107012.1484375 0.03305406542788225 61 -0.7324943542480469 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 58.678817012210395 0.019429721296335044 1 EA[SG]H{I|L}{I|L}QR 9 2 + 66.749 0 0 6.6119 6.6119 87.109 0 0 0 47.36371556024956 16.478174818886373 16.478174818886373 6.478174818886373 0 1.3851518780601921 0 0 0.3054621874040891 EA[SG]H{I|L}{I|L}QR;E{[QS]|[NT]}H{I|L}{I|L}QR;EA[SG]H{I|L}{I|L}[AG]R;E{[QS]|[NT]}H{I|L}{I|L}[AG]R 6.6119;5.9702;5.6998;5.0527 -;-;-;- 123 + NaN NaN 129879.9 NaN 826 1233 2060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2062 22.202 NaN 56275 35 0 20936 0.261 + -1 TADPGCAEPHC 11 25 607.7317690023915 1213.448985071583 2 607.7321166992188 MULTI HCD FTMS 0 0 0 2060 27770.056640625 0.6037075468044952 -6 0.06626319885253906 2 2 Carbamidomethyl (C) _TADPGC(Carbamidomethyl (C))AEPHC(Carbamidomethyl (C))_ REV__ENSG00000142798|ENST00000374695|HSPG2 1.1933415558491238 0.4136870758253112 1 {[CP]|[EA]}DP 4 -1 16.198 0 0 1.3349 0 0 0 798.2663668268186 798.2663668268186 16.197887582883936 0 0 0 0 0 0 0 0 {[CP]|[EA]}DP 1.3349 - 5 + NaN NaN 88733.8 NaN 827 1233 2060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2064 22.207 NaN 129120 35 0 28762 0.411 + 2200 DILADSRHLW 10 39 409.21557638441413 1224.6248997534424 3 409.21539306640625 MULTI HCD FTMS 0 0 0 2063 37365.86328125 0.1599428271911506 23 -0.32037353515625 1 Unmodified _DILADSRHLW_ ENSG00000115275|ENST00000448666|MOGS;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS 1.7422754331352037 0.46608156381052757 1 {NN|[MP]|[D{I|L}]|[EV]}AP 4 7 16.198 0 0 1.3227 0 0 0 825.4010080814742 825.4010080814742 10.713337517843655 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 - 16 + NaN NaN 117045 NaN 828 1234 2063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2066 22.215 NaN 51053 35 0 10722 0.327 -1 HPYQPDPKM 9 23 564.760853963688 1127.5071549941758 2 564.7607421875 MULTI HCD FTMS 0 0 0 2065 15465.4375 0.4745933296484536 19 -0.25202178955078125 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 10.073929032068715 0.27331982688540024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 88261.9 NaN 829 1235 2065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2067 22.22 NaN 43159 35 0 11091 0.261 + 14021 KYTPPPHHI 9 23 545.2957967646022 1088.5770405960043 2 545.2953491210938 MULTI HCD FTMS 0 0 0 2065 17887.087890625 0.10926809355427479 50 -0.6204566955566406 2 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 10.823927491677226 0.26684000660059787 1 KYT 3 6 23.188 0 0 2.1301 0 0 0 693.3503468826361 693.3503468826361 23.187587626244124 0 0 0 0 0 0 0 0 + KYT 2.1301 + + 4 + NaN NaN 87875.6 NaN 830 1235 2065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2069 22.225 NaN 76707 35 0 27417 0.411 -1 GEECELETMT 10 39 607.7317690023915 1213.448985071583 2 607.7320556640625 MULTI HCD FTMS 0 0 0 2068 34529.16796875 0.7506473449938654 -3 0.028135299682617188 1 Carbamidomethyl (C),Oxidation (M) _GEEC(Carbamidomethyl (C))ELETM(Oxidation (M))T_ ENSG00000163586|ENST00000295834|FABP1;nc|ENSG00000170325|Q9NQV6-6|PRDM10 3.5964929083625545 0.45626689593999237 1 {[CP]|[EA]}DPGQYR 8 -1 41.389 0 0 3.4108 0 0 0 294.02134119205317 294.02134119205317 37.40926274548464 0 0 0 0 0.3252574989159953 0 0 0 {[CP]|[EA]}DPGQYR 3.4108 - 49 + NaN NaN 109320.6 NaN 831 1236 2068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2071 22.233 NaN 35168 35 0 5015.1 0.411 + 23822 RRRRLWRWWW 10 31 552.9807451011295 NaN 0 553.2506713867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RRRRLWRWWW_ chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84962.7 NaN 832 1237 2070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2073 22.241 NaN 63714 35 0 9859 0.327 + 2572 DTIENVKAK 9 34 509.28236356763455 1016.5501742020691 2 509.2821350097656 MULTI HCD FTMS 0 0 0 2072 42833.05078125 0.2503175635880508 15 -0.20912551879882812 1 Unmodified _DTIENVKAK_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant 12.240655878213236 0.2545997876781172 1 {[ES]|[DT]|[{I|L}C]}{I|L}E 4 5 21.198 0 0 2.0853 0 0 0 555.3277734544258 555.3277734544258 17.21848749616356 0 0 0 0 0.5 0 0 0 + {[ES]|[DT]|[{I|L}C]}{I|L}E 2.0853 + + 6 + NaN NaN 86730.4 NaN 833 1238 2072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2074 22.246 NaN 27570 35 0 6085.2 0.261 + -1 IMMMWEEL 8 15 557.7357571382826 1113.456961343365 2 557.736083984375 MULTI HCD FTMS 0 0 0 2072 10536.38671875 0.6883675325741716 -7 0.06554794311523438 2 2 Oxidation (M) _IM(Oxidation (M))M(Oxidation (M))MWEEL_ REV__ENST00000539107.5_2_12:28343406-28458716:+|nuORF;REV__ENST00000545737.5_1_12:28410092-28458713:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79565.4 NaN 834 1238 2072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2075 22.249 NaN 9756.1 35 0 4269.6 0.261 + -1 MYPRCMNCD 9 8 623.726814490931 NaN 0 623.7266845703125 PEAK HCD FTMS 0 0 0 2072 1900.55615234375 0.3014437215175208 -2 0.016138076782226562 3 2 Carbamidomethyl (C) _MYPRC(Carbamidomethyl (C))MNC(Carbamidomethyl (C))D_ REV__ENST00000445955.1_1_2:91884693-91886596:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90587.5 NaN 835 1238 2072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2077 22.255 NaN 137680 35 0 37978 0.326 -1 NAAHQEALM 9 29 500.729585508408 999.444618083616 2 500.7294616699219 MULTI HCD FTMS 0 0 0 2076 97886.40625 0.4118305443786422 -14 0.14122581481933594 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 22.736283301280096 0.1639198954644489 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2778833197473 0 650.2778833197473 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 37 + NaN NaN 112620.2 NaN 836 1239 2076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2078 22.259 NaN 144660 35 0 23336 0.261 -1 EAAGEVRAM 9 39 475.2240532534603 948.4335535737206 2 475.2236633300781 MULTI HCD FTMS 0 0 0 2076 63526.8671875 0.1988617971675157 46 -0.5811386108398438 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 31.26834338654808 0.10542797264966089 1 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 41.616 0 0 4.3879 4.3879 81.982 0 0 0 13.199849938126889 5.6424927368725974 5.6424927368725974 3.4678748622465605 0 0.5752574989159953 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]};{[DA]|[EG]}AAEVR{[MS]|[{M(Oxidation (M))|F}A]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVR{[MS]|[{M(Oxidation (M))|F}A]} 4.3879;4.0222;1.1345;0.95456 +;-;-;- + 93 + NaN NaN 107904.7 NaN 837 1239 2076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2080 22.265 NaN 103120 35 0 26111 0.327 + 27548 TAASQEHGL 9 32 457.2221743731378 912.4297958130757 2 457.2220764160156 MULTI HCD FTMS 0 0 0 2079 83545.40625 0.951035654592434 -1 0.010162353515625 1 Unmodified _TAASQEHGL_ ENSG00000242485|ENST00000344843|MRPL20;nc|ENSG00000242485|Q9BYC9-2|MRPL20 21.536976647645854 0.1742816388551942 1 [TA]AS 4 5 51.242 0 0 5.616 0 0 0 579.2507418268186 579.2507418268186 51.242209500285014 0 0 0 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0 + [TA]AS 5.616 + + 16 + NaN NaN 93634.3 NaN 838 1240 2079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2081 22.269 NaN 163610 35 0 18848 0.261 + 25246 SASSVTVTR 9 45 454.24569400117167 906.4768350691434 2 454.2455139160156 MULTI HCD FTMS 0 0 0 2079 73919.1953125 0.18122545409328863 -8 0.08092117309570312 2 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 45.739877483867886 0.03899552410870734 1 {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 67.127 0 0 7.4052 7.4052 95.779 0 0 0 60.13682493045401 7.147642715192504 7.147642715192504 67.1265249738142 0 1.0994850021680094 1.3010299956639813 0.4247425010840047 0 + + {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.4052 + + 42 + NaN NaN 99593.9 NaN 839 1240 2079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2082 22.273 NaN 127860 35 0 37296 0.261 + -1 TADPGCAEPHC 11 29 579.2210922553019 1156.4276315774036 2 579.220703125 MULTI HCD FTMS 0 0 0 2079 37567.09375 0.3212589566373485 -6 0.05748176574707031 3 Carbamidomethyl (C) _TADPGCAEPHC(Carbamidomethyl (C))_ REV__ENSG00000142798|ENST00000374695|HSPG2 2.9952420565917617 0.40578455234410343 1 {[CP]|[EA]}DP 4 -1 16.198 0 0 1.4007 0 0 0 741.2455538385374 741.2455538385374 10.713337517843655 0 0 0 0 0 0 0 0 {[CP]|[EA]}DP 1.4007 - 17 + NaN NaN 117997.9 NaN 840 1240 2079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2083 22.276 NaN 49238 35 0 6346.8 0.261 + 7570 FYFYFFLG 8 29 552.2652107108945 1102.515868488589 2 552.2650146484375 MULTI HCD FTMS 0 0 0 2079 6511.7568359375 0.6888627312669019 -3 0.03148078918457031 4 Unmodified _FYFYFFLG_ ENSG00000181803|ENST00000320704|OR6S1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94735.2 NaN 841 1240 2079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2084 22.279 NaN 27419 35 0 5967.1 0.261 + 8870 HMYWLLEC 8 19 547.7427950405503 1093.4710371479005 2 547.7428588867188 MULTI HCD FTMS 0 0 0 2079 2129.42724609375 0.2754411221909037 -11 0.11259269714355469 5 Unmodified _HMYWLLEC_ REV__ENSG00000132801|ENST00000255152|ZSWIM3 2.577480529830294 0.5381683276125971 1 K 1 -1 1.5938 0 0 0.14576 0 0 564.7023736730943 397.64142786197505 962.3438015350694 0 0 0 0 0 0 0 0 0 K 0.14576 - 1 + NaN NaN 72952.1 NaN 842 1240 2079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2085 22.282 NaN 18223 35 0 4337.6 0.261 -1 YCGHCNTTTD 10 15 586.2107686876874 1170.4069844421747 2 586.2105712890625 MULTI HCD FTMS 0 0 0 2079 4480.5927734375 0.23967949240339428 -6 0.05748176574707031 6 Carbamidomethyl (C) _YC(Carbamidomethyl (C))GHCNTTTD_ ENSG00000142784|ENST00000319394|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80772.4 NaN 843 1240 2079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2087 22.288 NaN 31817 35 0 5067.6 0.326 -1 RSAYQEAM 8 16 486.21634385396106 970.4181347747221 2 486.21575927734375 MULTI HCD FTMS 0 0 0 2086 15965.5068359375 0.11556096027141306 68 -0.7899608612060547 1 Oxidation (M) _RSAYQEAM(Oxidation (M))_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 12.531546534597751 0.5015908124873912 1 CA{M(Oxidation (M))|F} 3 -1 34.693 0 0 3.575 0 0 631.3219261339003 0 631.3219261339003 0 34.69273760456403 0 0 0 1 0 0 0 CA{M(Oxidation (M))|F} 3.575 - 7 + NaN NaN 83001.6 NaN 844 1241 2086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2088 22.292 NaN 36498 35 0 10334 0.261 -1 LEDMRCQY 8 20 557.7357571382826 1113.456961343365 2 557.7345581054688 MULTI HCD FTMS 0 0 0 2086 6633.63720703125 0.4333915029969648 -4 0.054729461669921875 2 Carbamidomethyl (C) _LEDMRC(Carbamidomethyl (C))QY_ CON__O76013;ENSG00000126337|ENST00000328119|KRT36;nc|ENSG00000126337|O76013-2|KRT36 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93380.9 NaN 845 1241 2086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2090 22.298 NaN 331270 35 0 98617 0.327 + -1 EGSGSWRTCCS 11 48 405.49015100595454 1213.4486236180637 3 405.4902038574219 MULTI HCD FTMS 0 0 0 2089 111988.5625 0.8439605149108835 1 -0.013303756713867188 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EGSGSWRTCCS_ REV__ENST00000399298.7_1_10:63212760-63213120:-|nuORF 4.897010918128616 0.3974440401582579 1 [C(Carbamidomethyl (C))H][PG]Q 5 -1 14.181 0 0 1.1687 0 0 0 631.1958519718324 631.1958519718324 0.6690156004425756 0 0 0 0 0 1.5228787452803376 0 0 [C(Carbamidomethyl (C))H][PG]Q 1.1687 - 30 NaN NaN 129498.1 NaN 846 1242 2089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2091 22.302 NaN 24993 35 0 4200.9 0.261 + -1 IMCLEKMYL 9 18 616.7902264149626 1231.565899896725 2 617.2913818359375 MULTI HCD FTMS 0 0 0 2089 5472.693359375 0.6340614505924203 1 -0.013303756713867188 2 Carbamidomethyl (C),2 Oxidation (M) _IM(Oxidation (M))C(Carbamidomethyl (C))LEKM(Oxidation (M))YL_ REV__ENST00000370766.7_1_X:134425468-134426389:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96687.2 NaN 847 1242 2089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2092 22.306 NaN 17304 35 0 4190.6 0.261 + 1811 CQRSRPSSDL 10 18 574.7770510446327 1147.5395491560653 2 574.776611328125 MULTI HCD FTMS 0 0 0 2089 1918.217529296875 0.20685765836959805 -6 0.07290840148925781 3 Unmodified _CQRSRPSSDL_ ENSG00000116141|ENST00000366917|MARK1;nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102451.2 NaN 848 1242 2089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2094 22.311 NaN 46768 35 0 6319.5 0.411 -1 NNMSLIIH 8 29 479.2447574491974 956.4749619651948 2 479.2445983886719 MULTI HCD FTMS 0 0 0 2093 6611.30322265625 0.1704440388571576 16 -0.23784446716308594 1 Oxidation (M) _NNM(Oxidation (M))SLIIH_ nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5 2.577480529830294 0.5381683276125971 1 E 1 -1 2.4743 0 0 0.25868 0 0 460.65277065835727 363.7595614068969 824.4123320652542 0 0 0 0 0 0 0 0 0 E 0.25868 - 2 + NaN NaN 97750.3 NaN 849 1243 2093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2096 22.319 NaN 230250 35 0 18366 0.327 + 19582 NTELHLQR 8 47 505.77244627722763 1009.5303396212553 2 505.7722473144531 MULTI HCD FTMS 0 0 0 2095 95276.2109375 0.02942905227146384 72 -0.8396549224853516 1 Unmodified _NTELHLQR_ REV__ENSG00000153820|ENST00000392056|SPHKAP;REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP;REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant 25.399314129420986 0.40691472774782006 1 EA[SG]H{I|L}{I|L}QR 9 -1 + 57.145 0 0 5.6606 5.6606 85.41 0 0 0 42.452359395051715 16.478174818886373 16.478174818886373 6.478174818886373 0 0.7302046884880937 0 0 0 EA[SG]H{I|L}{I|L}QR;E{[QS]|[NT]}H{I|L}{I|L}QR;EA[SG]H{I|L}{I|L}[AG]R;E{[QS]|[NT]}H{I|L}{I|L}[AG]R;EA[SG]{I|L}{I|L}HQR;E{[QS]|[NT]}{I|L}{I|L}HQR 5.6606;5.0189;4.7484;4.1014;3.1279;2.4862 -;-;-;-;-;- 107 + NaN NaN 122855.5 NaN 850 1244 2095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2097 22.324 NaN 51681 35 0 8376.5 0.261 + 30926 VRIVPLKI 8 25 469.3298363191439 936.6451197050878 2 469.3282165527344 MULTI HCD FTMS 0 0 0 2095 9709.9072265625 0.5668968817819328 16 -0.23771286010742188 2 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89860.5 NaN 851 1244 2095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2098 22.327 NaN 43313 35 0 11132 0.261 + 18878 NAESGRGQVM 10 26 524.7455058745364 1047.4764588158728 2 525.2471923828125 MULTI HCD FTMS 0 0 0 2095 7301.5712890625 0.013894814463268316 -11 0.12257003784179688 3 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 8.97624648632007 0.42715123575657504 1 VM 2 8 20.969 0 0 2.0019 0 0 799.3588124005875 0 799.3588124005875 0 1.264100213633764 0 0 0 0 0 0 0 + VM 2.0019 + + 7 NaN NaN 93716.9 NaN 852 1244 2095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2100 22.333 NaN 82099 35 0 16676 0.327 + 4205 EVAPPEYHRK 10 30 409.21557638441413 1224.6248997534424 3 409.2154235839844 MULTI HCD FTMS 0 0 0 2099 16718.6875 0.07156355857612866 34 -0.4303741455078125 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 1.214830529360525 0.46887341353674167 1 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.4010322437235 825.4010322437235 13.098943791441968 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 4 + NaN NaN 94790.5 NaN 853 1245 2099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2101 22.337 NaN 32573 35 0 5185.2 0.261 + 32738 WQLFYRKRELF 11 23 529.2909089638578 NaN 0 529.2907104492188 PEAK HCD FTMS 0 0 0 2099 13094.001953125 1 0 0 2 Unmodified _WQLFYRKRELF_ ENST00000538212.6_1_7:144345963-144421230:-|nuORF 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96757 NaN 854 1245 2099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2102 22.341 NaN 17176 35 0 4687.7 0.261 + -1 PRCVWFHF 8 16 574.7770510446327 1147.5395491560653 2 574.7650146484375 MULTI HCD FTMS 0 0 0 2099 4607.80908203125 0.4968991172093677 -4 0.04493522644042969 3 Carbamidomethyl (C) _PRC(Carbamidomethyl (C))VWFHF_ REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84372.3 NaN 855 1245 2099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2104 22.346 NaN 57840 35 0 20386 0.327 -1 CHFWYEDAS 9 23 607.7317690023915 1213.448985071583 2 607.7317504882812 MULTI HCD FTMS 0 0 0 2103 24294.95703125 0.5281605687328716 7 -0.10405540466308594 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))HFWYEDAS_ ENSG00000163492|ENST00000443758|CCDC141;nc|ENSG00000163492|Q6ZP82-1|CCDC141 0.6014990680409731 0.3464572424761564 1 Y 1 -1 6.9897 0 0 0.57602 0 0 597.2390984522455 450.12189661197505 1047.3609950642206 0 0 0 0 0 0 0 0 0 Y 0.57602 + + 4 + NaN NaN 92716.4 NaN 856 1246 2103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2105 22.351 NaN 34837 35 0 4654.7 0.263 + 8592 HAVRDTEL 8 22 470.7457500247964 939.4769471163928 2 470.7454833984375 MULTI HCD FTMS 0 0 0 2103 21055.955078125 0.8778772057270955 -2 0.026773452758789062 2 Unmodified _HAVRDTEL_ ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6 6.723162845929126 0.5320176132289695 1 HA 2 6 22.959 0 0 2.4438 0 0 0 728.3601349675641 728.3601349675641 22.95880017344075 0 0 0 0 0.5 0 0 0 + HA 2.4438 + + 2 + NaN NaN 97960.3 NaN 857 1246 2103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2106 22.354 NaN 40702 35 0 6142.1 0.261 -1 WKMEFDTR 8 22 564.760853963688 1127.5071549941758 2 564.7611083984375 MULTI HCD FTMS 0 0 0 2103 10716.6611328125 0.32886595608663854 30 -0.3841743469238281 3 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83659.2 NaN 858 1246 2103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2107 22.358 NaN 19445 35 0 3893.8 0.261 -1 LNACCICLTM 10 14 571.2472285543785 1140.4799041755568 2 571.7489624023438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _LNAC(Carbamidomethyl (C))CICLTM_ ENST00000494237.1_1_14:103749412-103749574:+|nuORF 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89806.1 NaN 859 1246 2103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2109 22.363 NaN 34360 35 0 5483 0.327 + 16674 LWNLWRTT 8 21 545.2957967646022 1088.5770405960043 2 545.29541015625 MULTI HCD FTMS 0 0 0 2108 11801.6005859375 0.07209325547006884 62 -0.7147140502929688 1 Unmodified _LWNLWRTT_ ENST00000524227.5_1_8:41519075-41530298:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92714.8 NaN 860 1247 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2110 22.368 NaN 30849 35 0 5433 0.261 -1 LLLCLPLCA 9 19 529.2909089638578 NaN 0 529.2911987304688 PEAK HCD FTMS 0 0 0 2108 12167.0419921875 0.9292072840483827 2 -0.023586273193359375 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LLLC(Carbamidomethyl (C))LPLCA_ ENST00000439504.6_1_11:72535562-72535697:+|nuORF 2.302733041254933 0.2840881193086663 1 {I|L} 1 -1 1.5938 0 0 0.15085 0 0 402.18751753533417 538.2763765924436 940.4638941277778 0 0 0 0 0 0 0 0 0 {I|L} 0.15085 + + 1 + NaN NaN 82228.3 NaN 861 1247 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2111 22.371 NaN 41501 35 0 9555.8 0.261 -1 TFVSWSSM 8 24 480.7084121216233 NaN 0 480.7009582519531 PEAK HCD FTMS 0 0 0 2108 4231.32568359375 0.7558167526033504 7 -0.10404586791992188 3 Oxidation (M) _TFVSWSSM(Oxidation (M))_ ENST00000462251.1_1_19:11877828-11888701:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88080.2 NaN 862 1247 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2113 22.377 NaN 289580 35 0 82189 0.327 + 18758 NAAHQEALM 9 42 500.729585508408 999.444618083616 2 500.7294006347656 MULTI HCD FTMS 0 0 0 2112 230046.390625 0.967857886635158 -5 0.06524658203125 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 70.33199760932243 0.0089807860198535 1 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 79.052 0 0 7.9096 7.9096 91.284 0 0 0 8.712600430434705 8.712600430434705 8.712600430434705 9.208187539523749 0 2.25 1.3979400086720375 0 0 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F} 7.9096;6.9883 +;- + 102 + NaN NaN 134069.4 NaN 863 1248 2112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2114 22.381 NaN 43294 35 0 11461 0.261 + 25394 SELEKQKGV 9 26 509.28236356763455 1016.5501742020691 2 509.2821350097656 MULTI HCD FTMS 0 0 0 2112 12242.478515625 0.07154539166404142 25 -0.32819557189941406 2 Unmodified _SELEKQKGV_ ENSG00000144711|ENST00000613206|IQSEC1;nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1 1.6526216038709556 0.33848895094777925 1 E 1 8 4.6041 0 0 0.45291 0 0 329.15699900851286 555.3274019830686 884.4844009915814 0 0 0 0 0 0 0 0 0 + E 0.45291 + + 1 + NaN NaN 82977 NaN 864 1248 2112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2116 22.387 NaN 616660 35 0 85018 0.327 + 25247 SASSVTVTR 9 52 454.24569400117167 906.4768350691434 2 454.2455139160156 MULTI HCD FTMS 0 0 0 2115 392055.875 0.9611915237502824 1 -0.016599655151367188 1 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 114.18643581695662 0.002258955990713129 1 {[SA]|[TG]}SSVTVTR 9 0 + 104.74 0 0 11.554 11.554 99.914 0 0 0 6.4967468446879195 6.4967468446879195 6.4967468446879195 104.73882528050268 0 3.274227503252014 1.6989700043360187 2.3737125054200234 0 + + {[SA]|[TG]}SSVTVTR 11.554 + + 191 NaN NaN 171810.9 NaN 865 1249 2115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2117 22.391 NaN 95839 35 0 17557 0.261 -1 EAAGEVRAM 9 35 475.2240532534603 948.4335535737206 2 475.2237243652344 MULTI HCD FTMS 0 0 0 2115 51781.08984375 0.16209331644244668 56 -0.6570415496826172 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 18.1463463914782 0.20357593197100715 1 GEVR{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 33.901 0 0 3.5744 0 0 271.1174047473518 0 271.1174047473518 0 8.494850021680094 0 0 0 0.2742275032520141 0 0.4247425010840047 0 GEVR{[MS]|[{M(Oxidation (M))|F}A]} 3.5744 + + 66 + NaN NaN 120034.8 NaN 866 1249 2115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2118 22.395 NaN 61990 35 0 11541 0.261 + 27696 TANQAPSQP 9 26 457.2221743731378 912.4297958130757 2 457.2219543457031 MULTI HCD FTMS 0 0 0 2115 38817.65234375 0.44187912972749244 8 -0.1408100128173828 3 Unmodified _TANQAPSQP_ REV__ENSG00000183495|ENST00000389561|EP400;REV__EP400-SFSWAP|1|fusion;REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;REV__nc|ENSG00000183495|Q96L91-3|EP400;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__nc|ENSG00000183495|Q96L91-5|EP400;REV__nc|ENSG00000183495|Q96L91|EP400 17.11289562659939 0.2125047172822487 1 [TA]AS 4 -1 42.435 0 0 4.6508 0 0 0 579.2517183893186 579.2517183893186 42.43501263708417 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [TA]AS 4.6508 - 10 + NaN NaN 90097.3 NaN 867 1249 2115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2119 22.398 NaN 30100 35 0 9266.2 0.261 + 20200 NYLEDRKNG 9 22 554.7725410969604 1107.5305292607206 2 554.7728881835938 MULTI HCD FTMS 0 0 0 2115 1894.47021484375 0.06923731568985965 -13 0.16160202026367188 4 Unmodified _NYLEDRKNG_ ENSG00000116266|ENST00000370008|STXBP3 0.5247636613948944 0.34703895399870666 1 V 1 9 3.9794 0 0 0.3593 0 0 747.3315984519301 258.10248743228755 1005.4340858842177 0 0 0 0 0 0 0 0 0 V 0.3593 - 3 + NaN NaN 85148.5 NaN 868 1249 2115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2121 22.403 NaN 172050 35 0 56103 0.327 + -1 EEGQYCWW 8 25 579.2210922553019 1156.4276315774036 2 579.2210693359375 MULTI HCD FTMS 0 0 0 2120 80524.5 0.6886137380202366 4 -0.06385993957519531 1 Carbamidomethyl (C) _EEGQYC(Carbamidomethyl (C))WW_ REV__nc|ENSG00000156504|Q7Z309-4|PABIR2;REV__nc|ENSG00000156504|Q7Z309-5|PABIR2 5.230669730166228 0.5342319408533849 1 {[CP]|[EA]}D 3 -1 13.512 0 0 1.1684 0 0 0 838.2983588348856 838.2983588348856 6.522496736287453 0 0 0 0 0.3054621874040891 0 0 0 {[CP]|[EA]}D 1.1684 - 6 + NaN NaN 109171.5 NaN 869 1250 2120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2122 22.408 NaN 30452 35 0 4497 0.261 -1 0 25 495.26664588238083 988.5187388315617 2 495.2664489746094 MULTI HCD FTMS 0 0 0 2120 17462.384765625 1 0 0 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81886.6 NaN 870 1250 2120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2123 22.411 NaN 31239 35 0 5976.1 0.261 + -1 MISCCKCR 8 18 557.7357571382826 1113.456961343365 2 557.73681640625 MULTI HCD FTMS 0 0 0 2120 4624.66357421875 0.30214041478806747 5 -0.09062957763671875 3 3 Carbamidomethyl (C) _MISC(Carbamidomethyl (C))C(Carbamidomethyl (C))KC(Carbamidomethyl (C))R_ REV__ENSG00000099864|ENST00000338448|PALM;REV__nc|ENSG00000099864|O75781-2|PALM 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82747.2 NaN 871 1250 2120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2124 22.415 NaN 51905 35 0 7194.9 0.261 -1 HPYQPDPKM 9 19 564.760853963688 1127.5071549941758 2 565.2621459960938 MULTI HCD FTMS 0 0 0 2120 8946.748046875 0.39019555030380965 27 -0.3352241516113281 4 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 6.2057823575117 0.30397260197431997 1 R{[ES]|[DT]|[{I|L}C]} 3 -1 13.952 0 0 1.2375 0 0 737.3154164044937 0 737.3154164044937 0 13.952424927286843 0 0 0 0.5 0 0 0 R{[ES]|[DT]|[{I|L}C]} 1.2375 - 1 NaN NaN 92189.7 NaN 872 1250 2120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2126 22.42 NaN 51492 35 0 6189.7 0.327 + 11779 KEEAPSYRT 9 26 540.7697218591968 1079.5248907851935 2 540.7695922851562 MULTI HCD FTMS 0 0 0 2125 22000.0234375 0.4336338765017887 -3 0.043521881103515625 1 Unmodified _KEEAPSYRT_ ENSG00000025293|ENST00000374012|PHF20;SULF2-PHF20|1|fusion 2.9952420565917617 0.3283108881486655 1 KE 2 7 20.969 0 0 1.9424 0 0 0 819.3668198647028 819.3668198647028 20.969100130080562 0 0 0 0 0 0 0 0 + KE 1.9424 + + 1 + NaN NaN 103978.3 NaN 873 1251 2125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2127 22.425 NaN 17477 35 0 4025 0.261 + -1 YLCNHCQCM 9 11 586.2107686876874 1170.4069844421747 2 586.7132568359375 MULTI HCD FTMS 0 0 0 2125 7650.85546875 0.6137468914010542 6 -0.10743141174316406 2 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))NHCQCM_ REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102130.5 NaN 874 1251 2125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2128 22.428 NaN 72996 35 0 12395 0.264 + 25649 SHGTGQCCHDR 11 26 400.8262094777173 NaN 0 400.3492736816406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SHGTGQCCHDR_ REV__ENSG00000183530|ENST00000327423|PRR14L;REV__nc|ENSG00000183530|Q5THK1-2|PRR14L;REV__nc|ENSG00000183530|Q5THK1-3|PRR14L;REV__nc|ENSG00000183530|Q5THK1-4|PRR14L 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91379.4 NaN 875 1251 2125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2130 22.434 NaN 125770 35 0 34578 0.327 + 3118 EAMNMYNNNN 10 39 405.49015100595454 1213.4486236180637 3 405.49029541015625 MULTI HCD FTMS 0 0 0 2129 36620.24609375 0.27597498404754073 11 -0.16837692260742188 1 Unmodified _EAMNMYNNNN_ REV__ENSG00000103460|ENST00000219746|TOX3;REV__nc|ENSG00000103460|O15405-2|TOX3;REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant 0.4007161486938917 0.47318265037741464 1 {[CP]|[EA]}D 3 -1 10.458 0 0 0.86181 0 0 0 895.3187357086042 895.3187357086042 3.4678748622465623 0 0 0 0 0 0 0 0 {[CP]|[EA]}D 0.86181 - 3 + NaN NaN 98614.6 NaN 876 1252 2129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2131 22.438 NaN 33106 35 0 5296.4 0.261 -1 NAESGRGQVM 10 24 532.7431072747395 1063.4716616162789 2 532.7427368164062 MULTI HCD FTMS 0 0 0 2129 15881.0732421875 0.6010751863891975 -7 0.10077667236328125 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 7.608950283845883 0.4350283211712914 1 {M(Oxidation (M))|F} 1 -1 19.604 0 0 1.8434 0 0 898.4257612029961 0 898.4257612029961 0 5.651668842475031 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8434 + + 2 + NaN NaN 86004.5 NaN 877 1252 2129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2132 22.442 NaN 17001 35 0 4922.5 0.261 + -1 MVRFYYIAGE 10 17 632.8051621512767 1263.5957713693533 2 632.8058471679688 MULTI HCD FTMS 0 0 0 2129 9770.373046875 0.8458646034894742 -3 0.046878814697265625 3 Oxidation (M) _M(Oxidation (M))VRFYYIAGE_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88892.7 NaN 878 1252 2129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2133 22.445 NaN 14522 35 0 4150.9 0.261 + 32517 WGLRSYHET 9 14 574.7770510446327 1147.5395491560653 2 574.7754516601562 MULTI HCD FTMS 0 0 0 2129 1554.304443359375 0.1676138251455951 2 -0.033580780029296875 4 Unmodified _WGLRSYHET_ ENSG00000067445|ENST00000173898|TRO;ENSG00000179222|ENST00000326587|MAGED1;ENST00000475183.1_1_X:54953428-54957230:+|nuORF;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;ENST00000494718.5_1_X:51643260-51645023:+|nuORF;nc|ENSG00000067445|Q12816-2|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82387.2 NaN 879 1252 2129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2135 22.451 NaN 34209 35 0 8305.1 0.327 -1 0 21 485.3587430909652 484.35146662436523 1 485.358154296875 MULTI HCD FTMS 0 0 0 2134 10669.8125 0.20616452981211927 30 -0.3604717254638672 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99168.4 NaN 880 1253 2134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2136 22.455 NaN 50988 35 0 6309.5 0.261 -1 YVMYYEMS 8 31 551.2177708779533 NaN 0 551.2014770507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YVM(Oxidation (M))YYEMS_ ENSG00000065717|ENST00000262953|TLE2;ENSG00000104964|ENST00000327141|TLE5;ENSG00000106829|ENST00000376552|TLE4;ENSG00000140332|ENST00000451782|TLE3;ENSG00000196781|ENST00000376499|TLE1;ENST00000376524.6_1_9:82187705-82194998:+|nuORF;ENST00000485159.5_1_9:82188246-82242462:+|nuORF;nc|ENSG00000065717|Q04725-2|TLE2;nc|ENSG00000065717|Q04725-3|TLE2;nc|ENSG00000104964|Q08117-2|TLE5;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-3|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726|TLE3;TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant;TLE1|p.T727Pfs*28|1|0.17|ENSG00000196781|chr9:81584475-81584475|C/-|frameshift_variant;TLE3-THAP10|1|fusion 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88841.1 NaN 881 1253 2134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2137 22.458 NaN 19782 35 0 5565 0.261 + -1 MLYDMCHKR 9 21 606.771174395011 NaN 0 606.7705688476562 PEAK HCD FTMS 0 0 0 2134 8290.1376953125 0.6470202932082122 28 -0.3329181671142578 3 Oxidation (M) _M(Oxidation (M))LYDMCHKR_ REV__ENSG00000068308|ENST00000376488|OTUD5;REV__ENST00000484499.5_1_X:48791963-48792283:-|nuORF;REV__nc|ENSG00000068308|Q96G74-2|OTUD5;REV__nc|ENSG00000068308|Q96G74-3|OTUD5;REV__nc|ENSG00000068308|Q96G74-4|OTUD5;REV__nc|ENSG00000068308|Q96G74|OTUD5 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103920.3 NaN 882 1253 2134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2138 22.462 NaN 23713 35 0 5224.9 0.261 + 23764 RRKHMRIH 8 16 567.3329724044827 NaN 0 567.33349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RRKHMRIH_ ENSG00000130803|ENST00000247956|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88287.8 NaN 883 1253 2134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2140 22.467 NaN 1300400 35 0 156440 0.327 + 18879 NAESGRGQVM 10 70 524.7455058745364 1047.4764588158728 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2139 829624.4375 0.8483163459052189 -1 0.016798019409179688 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 166.76915356408847 5.629285383886816E-11 1 {[QG]|[NA]}ESGRGQVM 10 0 + 105.57 0 0 10.078 10.078 91.258 0 0 0 4.836448106754233 4.836448106754233 4.836448106754233 4.836448106754233 0 2.9291746928241125 1.5228787452803376 1.079689690656103 1.7856668758921828 + + {[QG]|[NA]}ESGRGQVM;NAESGRGQVM;{[QG]|[NA]}ESGRANVM;{[QG]|[NA]}ES[RN]QVM;{[QG]|[NA]}ESGRG[AG]VM;NAES[RN]QVM;NAESGRG[AG]VM;{[QG]|[NA]}ESGRAGGVM;{[QG]|[NA]}ES[RN][AG]VM;NAES[RN][AG]VM 10.078;9.6168;9.5755;9.4805;9.2036;9.1448;8.7419;8.7006;8.6014;8.2658 +;+;-;-;-;-;-;-;-;- + 1186 NaN NaN 274003.3 NaN 884 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2141 22.472 NaN 177620 35 0 15296 0.261 + 19583 NTELHLQR 8 40 505.77244627722763 1009.5303396212553 2 505.7722473144531 MULTI HCD FTMS 0 0 0 2139 65810.1484375 0.020327532752435474 82 -0.8971080780029297 2 Unmodified _NTELHLQR_ REV__ENSG00000153820|ENST00000392056|SPHKAP;REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP;REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant 15.847184025352803 0.47719562709667024 1 H{I|L}{I|L}QR 5 -1 33.984 0 0 3.3664 0 0 344.13239967669557 0 344.13239967669557 0 19.291746928241125 0 0 0 0.3807196863200844 0 0 0 H{I|L}{I|L}QR 3.3664 - 57 + NaN NaN 126124.7 NaN 885 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2142 22.475 NaN 78027 35 0 16317 0.261 -1 MPQKERESIM 10 26 422.2055305039097 1263.5947621119292 3 422.2054443359375 MULTI HCD FTMS 0 0 0 2139 36746.6640625 1 0 0 3 Oxidation (M) _MPQKERESIM(Oxidation (M))_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 3.072263186857199 0.4590417271953214 1 {M(Oxidation (M))|F} 1 -1 19.732 0 0 1.5616 0 0 1098.5486633343885 0 1098.5486633343885 0 16.63303128443836 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.5616 + + 2 + NaN NaN 96634.2 NaN 886 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2143 22.479 NaN 44738 35 0 7692.2 0.261 + 4206 EVAPPEYHRK 10 28 409.21557638441413 1224.6248997534424 3 409.21533203125 MULTI HCD FTMS 0 0 0 2139 17758.953125 0.07601636684767633 43 -0.4912986755371094 4 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 2.6312355333042263 0.46137615667793275 1 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.400708856283 825.400708856283 13.723637474483468 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 4 + NaN NaN 87102.8 NaN 887 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2144 22.482 NaN 21005 35 0 3718.4 0.261 + -1 LVNEQLTCN 9 16 545.7635001173448 1089.5124473014896 2 545.7636108398438 MULTI HCD FTMS 0 0 0 2139 7128.97265625 0.3255258687647104 -29 0.3539295196533203 5 Carbamidomethyl (C) _LVNEQLTC(Carbamidomethyl (C))N_ REV__ENSG00000108846|ENST00000285238|ABCC3;REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF;REV__nc|ENSG00000108846|O15438-2|ABCC3;REV__nc|ENSG00000108846|O15438-4|ABCC3 1.4819007175156935 0.3397831423917744 1 T[C(Carbamidomethyl (C))N] 3 -1 10.458 0 0 0.95984 0 0 696.3703480451187 0 696.3703480451187 0 10.45757490560675 0 0 0 0 0 0 0 T[C(Carbamidomethyl (C))N] 0.95984 + + 1 NaN NaN 95003.2 NaN 888 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2145 22.485 NaN 30491 35 0 5011.2 0.261 -1 NVCYYSTCAWN 11 20 479.8551598378587 NaN 0 479.85504150390625 PEAK HCD FTMS 0 0 0 2139 4151.54443359375 0.5843221152904494 6 -0.09008598327636719 6 2 Carbamidomethyl (C) _NVC(Carbamidomethyl (C))YYSTC(Carbamidomethyl (C))AWN_ ENST00000503862.5_3_4:108746377-108829880:+|nuORF 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76908.5 NaN 889 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2146 22.489 NaN 35982 35 0 7439.3 0.261 -1 WWMCRMGT 8 22 543.7193545808577 NaN 0 543.7195434570312 PEAK HCD FTMS 0 0 0 2139 7788.048828125 0.8874408110324051 -1 0.016798019409179688 7 Oxidation (M) _WWM(Oxidation (M))CRMGT_ ENST00000243077.7_1_12:57592080-57592285:+|nuORF 0.7936320650641473 0.38822285293237185 1 P 1 -1 3.0989 0 0 0.28551 0 0 842.8347835251935 142.51580225162346 985.350585776817 0 0 0 0 0 0 0 0 0 P 0.28551 - 1 + NaN NaN 103645.3 NaN 890 1254 2139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2148 22.494 NaN 56217 35 0 6208.7 0.327 + 27566 TADPSHQTM 9 35 494.21397087573774 986.4133888182755 2 494.2135009765625 MULTI HCD FTMS 0 0 0 2147 24594.646484375 0.2278015384003097 -9 0.14762306213378906 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 12.240655878213236 0.2545997876781172 1 D[PG] 3 7 20.458 0 0 2.0739 0 0 699.301890870813 0 699.301890870813 0 19.348331157524967 0 0 0 1 0 0 0 D[PG] 2.0739 - 8 + NaN NaN 95966.5 NaN 891 1255 2147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2149 22.498 NaN 33986 35 0 5162.8 0.261 -1 WKMEFDTR 8 20 564.760853963688 1127.5071549941758 2 564.7606811523438 MULTI HCD FTMS 0 0 0 2147 9242.787109375 0.2836366646252385 39 -0.4355278015136719 2 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85681.6 NaN 892 1255 2147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2150 22.502 NaN 29147 35 0 3564.1 0.261 + 2019 DDDYQDEPG 9 26 527.1849599884196 NaN 0 527.1848754882812 PEAK HCD FTMS 0 0 0 2147 3973.37744140625 0.50056081423559 1 -0.020130157470703125 3 Unmodified _DDDYQDEPG_ REV__BCOR|p.D1627Y|1|0.21|ENSG00000183337|chrX:40053983-40053983|C/A|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96218.7 NaN 893 1255 2147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2151 22.505 NaN 18931 35 0 4638 0.261 -1 YMNFKVVFSN 10 18 632.8051621512767 1263.5957713693533 2 632.8042602539062 MULTI HCD FTMS 0 0 0 2147 11550.7529296875 1 0 0 4 Oxidation (M) _YM(Oxidation (M))NFKVVFSN_ chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|15 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80428.6 NaN 894 1255 2147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2152 22.509 NaN 34034 35 0 8527.6 0.264 -1 VCVYVCMS 8 17 480.70152430558267 959.3884956779654 2 481.2039794921875 MULTI HCD FTMS 0 0 0 2147 2322.846435546875 0.3970018582485263 3 -0.047016143798828125 5 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VYVCMS_ ENST00000509330.5_1_6:64395779-64395878:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84366 NaN 895 1255 2147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2154 22.514 NaN 247940 35 0 70672 0.327 + 18759 NAAHQEALM 9 42 500.729585508408 999.444618083616 2 500.7294921875 MULTI HCD FTMS 0 0 0 2153 184454.90625 0.776044063362975 3 -0.03509521484375 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 66.45667989310934 0.010234776021261575 1 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 74.12 0 0 7.4161 7.4161 90.555 0 0 0 17.208859094697573 33.802652907819635 17.208859094697573 9.208187539523749 0 2.242992819099939 1.5228787452803376 0.3494850021680094 0.7614393726401688 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F} 7.4161;6.4948 +;- + 76 NaN NaN 120494.4 NaN 896 1256 2153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2155 22.519 NaN 51352 35 0 7602.9 0.261 + 18389 MPQKERESI 9 25 559.2870513620511 1116.559549790902 2 559.286865234375 MULTI HCD FTMS 0 0 0 2153 29369.28125 0.8313640984677143 -2 0.04689979553222656 2 Unmodified _MPQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 2.9952420565917617 0.3283108881486655 1 M[QP]K 4 5 16.198 0 0 1.4507 0 0 0 629.2897432916624 629.2897432916624 10.713337517843655 0 0 0 0 0 0 0 0 + M[QP]K 1.4507 + + 3 + NaN NaN 86786.1 NaN 897 1256 2153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2156 22.522 NaN 35554 35 0 11085 0.261 + 3483 EGRLRAWH 8 28 512.7746915180676 1023.5348301029352 2 512.7750854492188 MULTI HCD FTMS 0 0 0 2153 8996.080078125 0.6287288001635843 -7 0.12735939025878906 3 Unmodified _EGRLRAWH_ REV__ENSG00000100106|ENST00000644935|TRIOBP;REV__ENST00000492485.5_1_22:38106528-38122511:+|nuORF;REV__nc|ENSG00000100106|Q9H2D6-2|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100817.9 NaN 898 1256 2153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2158 22.528 NaN 172780 35 0 21648 0.327 + 25248 SASSVTVTR 9 37 454.24569400117167 906.4768350691434 2 454.24554443359375 MULTI HCD FTMS 0 0 0 2157 107971.265625 0.2647098843432463 9 -0.10334396362304688 1 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 38.61474834105838 0.07170385841135779 1 {[SA]|[TG]}SSVTVTR 9 0 + 79.887 0 0 8.813 8.813 98.2 0 0 0 59.4420594384119 14.09256854528806 14.09256854528806 79.88737203213589 0 0.8807196863200843 1.6989700043360187 0.4247425010840047 0 + + {[SA]|[TG]}SSVTVTR 8.813 + + 42 + NaN NaN 122213.7 NaN 899 1257 2157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2159 22.532 NaN 79689 35 0 11899 0.261 -1 EAAGEVRAM 9 37 475.2240532534603 948.4335535737206 2 475.2236633300781 MULTI HCD FTMS 0 0 0 2157 49028.53125 0.15347682435026744 64 -0.6846027374267578 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 12.240655878213236 0.2545997876781172 1 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 38.874 0 0 4.0988 4.0988 80.833 0 0 0 7.147642715192511 1.7609125905568135 1.7609125905568135 1.7609125905568135 0 0 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}AGEV{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEV{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[DV]AAR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}[DV]AA{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[DV]{[MS]|[{M(Oxidation (M))|F}A]}A{[QV]|[N{I|L}]|[RA]|[KV]} 4.0988;3.9131;3.4157;3.23;0.27647;0.090802;0.090802 +;-;-;-;-;-;- + 151 + NaN NaN 99521.2 NaN 900 1257 2157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2160 22.536 NaN 82968 35 0 17027 0.261 + -1 EEGQYCWW 8 30 579.2210922553019 1156.4276315774036 2 579.2211303710938 MULTI HCD FTMS 0 0 0 2157 26617.359375 0.227621150524955 11 -0.12432861328125 3 Carbamidomethyl (C) _EEGQYC(Carbamidomethyl (C))WW_ REV__nc|ENSG00000156504|Q7Z309-4|PABIR2;REV__nc|ENSG00000156504|Q7Z309-5|PABIR2 0.6903765706972694 0.5409681170271811 1 Y 1 -1 3.0989 0 0 0.26798 0 0 597.2388020869724 393.1020601861938 990.3408622731663 0 0 0 0 0 0 0 0 0 Y 0.26798 + + 3 + NaN NaN 94715.4 NaN 901 1257 2157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2162 22.541 NaN 30933 35 0 5681 0.411 + 4169 ETRAEFAER 9 28 554.7725410969604 1107.5305292607206 2 554.7716064453125 MULTI HCD FTMS 0 0 0 2161 8861.7392578125 0.3238705120549976 -5 0.09058380126953125 1 Unmodified _ETRAEFAER_ CON__Q3SX28;ENSG00000140416|ENST00000403994|TPM1;ENSG00000143549|ENST00000651641|TPM3;ENSG00000167460|ENST00000643579|TPM4;ENSG00000198467|ENST00000645482|TPM2;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000198467|P07951-3|TPM2 4.897010918128616 0.31389406404703984 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102988.7 NaN 902 1258 2161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2164 22.549 NaN 51349 35 0 4943.6 0.412 + 11780 KEEAPSYRT 9 34 540.7697218591968 1079.5248907851935 2 540.7694702148438 MULTI HCD FTMS 0 0 0 2163 27531.3515625 0.5426597265815051 5 -0.0604400634765625 1 Unmodified _KEEAPSYRT_ ENSG00000025293|ENST00000374012|PHF20;SULF2-PHF20|1|fusion 4.897010918128616 0.31389406404703984 1 KE 2 7 20.969 0 0 1.9424 0 0 0 819.3649782959677 819.3649782959677 11.989700043360187 0 0 0 0 0 0 0 0 + KE 1.9424 + + 2 + NaN NaN 109289.7 NaN 903 1259 2163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2166 22.557 NaN 34701 35 0 6588.5 0.327 -1 NAESGRGQVM 10 19 532.7431072747395 1063.4716616162789 2 532.7427978515625 MULTI HCD FTMS 0 0 0 2165 20554.31640625 0.7779505438064143 1 -0.019872665405273438 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.498486711656943 0.462078817294651 1 {[QG]|[NA]}E 3 -1 7.4473 0 0 0.70028 0 0 0 746.3272799127561 746.3272799127561 3.9524249272868435 0 0 0 0 0 0 0 0 {[QG]|[NA]}E 0.70028 + + 2 + NaN NaN 86717.6 NaN 904 1260 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2167 22.562 NaN 34339 35 0 5983.9 0.261 -1 ESALIEIMLC 10 20 597.7914734476916 1193.568393962183 2 597.7906494140625 MULTI HCD FTMS 0 0 0 2165 14416.46484375 0.6463274404164387 -2 0.016300201416015625 2 Carbamidomethyl (C),Oxidation (M) _ESALIEIM(Oxidation (M))LC(Carbamidomethyl (C))_ ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88668.7 NaN 905 1260 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2168 22.565 NaN 22594 35 0 3185.5 0.261 + 3460 EFWRPQKV 8 16 545.2957967646022 1088.5770405960043 2 545.29541015625 MULTI HCD FTMS 0 0 0 2165 6527.55810546875 0.03987534662493359 75 -0.7969017028808594 3 Unmodified _EFWRPQKV_ REV__ENSG00000150760|ENST00000623213|DOCK1;REV__nc|ENSG00000150760|Q14185|DOCK1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86823.2 NaN 906 1260 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2169 22.568 NaN 44034 35 0 8918 0.261 + 30927 VRIVPLKI 8 18 469.3298363191439 936.6451197050878 2 469.8330078125 MULTI HCD FTMS 0 0 0 2165 6181.7626953125 0.538793149308039 47 -0.5044384002685547 4 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86560.1 NaN 907 1260 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2170 22.572 NaN 19946 35 0 4360.5 0.261 -1 DPSDFDRCC 9 21 586.2107686876874 1170.4069844421747 2 586.2107543945312 MULTI HCD FTMS 0 0 0 2165 3700.55322265625 0.19795298588082388 14 -0.15528106689453125 5 2 Carbamidomethyl (C) _DPSDFDRC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000213626|ENST00000395323|LBH 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102840.4 NaN 908 1260 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2172 22.577 NaN 13325 35 0 1513.7 0.411 -1 LQMNQNIKEM 10 20 632.8051621512767 1263.5957713693533 2 632.8059692382812 MULTI HCD FTMS 0 0 0 2171 11328.568359375 0.9807644946035123 6 -0.06146049499511719 1 Oxidation (M) _LQMNQNIKEM(Oxidation (M))_ ENSG00000157470|ENST00000288228|FAM81A 1.3295316138638542 0.46826628246186464 1 T 1 -1 6.9897 0 0 0.55316 0 0 63.99746858774785 1095.5233111013385 1159.5207796890863 0 0 0 0 0 0 0 0 0 T 0.55316 - 1 + NaN NaN 92564.1 NaN 909 1261 2171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2174 22.585 NaN 860900 35 0 114490 0.327 + 18880 NAESGRGQVM 10 67 524.7455058745364 1047.4764588158728 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2173 579151.125 0.5921997278279265 7 -0.07471656799316406 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 162.31443362245884 8.073259504239566E-11 1 NAESGRGQVM 10 0 + 113.18 0 0 10.805 10.805 91.246 0 0 0 4.139589194998919 4.139589194998919 4.139589194998919 4.139589194998919 0 3.1747425010840047 1.5228787452803376 0.5796896906561032 0.6861818737241735 + + NAESGRGQVM;{[QG]|[NA]}ESGRGQVM;NAESGRG[AG]VM;{[QG]|[NA]}ESGRG[AG]VM;{[QG]|[NA]}ES[RN]QVM;{[QG]|[NA]}ESGRVANM;NAES[RN]QVM;{[QG]|[NA]}ESGRG{I|L}NM;{[QG]|[NA]}ES[RN][AG]VM;{[QG]|[NA]}ESGRVAGGM 10.805;10.41;9.9298;9.5346;9.4481;9.4402;9.1839;9.1132;8.569;8.5653 +;+;-;-;-;-;-;-;-;- + 1314 + NaN NaN 206817 NaN 910 1262 2173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2175 22.59 NaN 75346 35 0 17684 0.263 + 20485 PCPSAQFQVVK 11 22 401.8778357069083 NaN 0 401.8779296875 PEAK HCD FTMS 0 0 0 2173 30367.185546875 0.42934124556906994 478 -6.075832366943359 2 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95213 NaN 911 1262 2173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2176 22.593 NaN 43108 35 0 7746.5 0.261 + 810 AVGSVQPAR 9 25 442.7512868740133 883.4880208148267 2 442.751220703125 MULTI HCD FTMS 0 0 0 2173 22642.62890625 0.9851940780391274 1 -0.016603469848632812 3 Unmodified _AVGSVQPAR_ ENST00000382948.9_1_18:47802317-47803521:-|nuORF;ENST00000586118.5_1_18:47802317-47803521:-|nuORF 6.2057823575117 0.30397260197431997 1 [WK]VQ 4 7 11.427 0 0 1.2934 0 0 0 339.17913400177486 339.17913400177486 6.822581265925436 0 0 0 0 0 0 0 0 [WK]VQ 1.2934 - 7 + NaN NaN 85664.5 NaN 912 1262 2173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2177 22.597 NaN 50126 35 0 9946.4 0.261 -1 0 27 551.0010506755391 2749.9688710446953 5 551.201416015625 MULTI HCD FTMS 0 0 0 2173 17737.560546875 0.7318854811375487 3 -0.0322418212890625 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105381.4 NaN 913 1262 2173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2179 22.602 NaN 145710 35 0 12923 0.327 + 8520 HAGSELLQR 9 35 505.77244627722763 1009.5303396212553 2 505.7722473144531 MULTI HCD FTMS 0 0 0 2178 52673.9921875 0.01627001802632025 91 -0.9373874664306641 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 10.073929032068715 0.27331982688540024 1 H{I|L}{I|L}QR 5 4 26.203 0 0 2.5956 0 0 344.13258679098027 0 344.13258679098027 0 12.390690719683091 0 0 0 0.2302046884880938 0 0 0 H{I|L}{I|L}QR 2.5956 - 37 + NaN NaN 95970.7 NaN 914 1263 2178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2181 22.61 NaN 42302 35 0 4469.9 0.411 + 11781 KEEAPSYRT 9 28 540.7697218591968 1079.5248907851935 2 540.7689819335938 MULTI HCD FTMS 0 0 0 2180 9828.759765625 0.19373084808209223 10 -0.10293197631835938 1 Unmodified _KEEAPSYRT_ ENSG00000025293|ENST00000374012|PHF20;SULF2-PHF20|1|fusion 4.897010918128616 0.31389406404703984 1 KE 2 7 20.969 0 0 1.9424 0 0 0 819.3655470427678 819.3655470427678 20.969100130080562 0 0 0 0 0 0 0 0 + KE 1.9424 + + 1 + NaN NaN 89096.4 NaN 915 1264 2180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2183 22.618 NaN 136800 35 0 23050 0.326 + 27567 TADPSHQTM 9 16 494.21397087573774 986.4133888182755 2 494.2135009765625 MULTI HCD FTMS 0 0 0 2182 106861.5 0.9897769464273438 1 -0.0132598876953125 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 26.268140514670165 0.13340543277302316 1 [TA]D 3 6 41.254 0 0 4.1823 0 0 0 696.2795534295952 696.2795534295952 20.285371682087217 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 + [TA]D 4.1823 + + 8 + NaN NaN 102334.5 NaN 916 1265 2182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2184 22.622 NaN 24547 35 0 4638.7 0.261 + 35698 YYLDFDVR 8 18 545.7635001173448 1089.5124473014896 2 545.7634887695312 MULTI HCD FTMS 0 0 0 2182 11499.64453125 0.5251011551066372 -18 0.25448036193847656 2 Unmodified _YYLDFDVR_ REV__ENSG00000176407|ENST00000409785|KCMF1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103110.2 NaN 917 1265 2182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2185 22.625 NaN 15326 35 0 4075.7 0.261 -1 IFMQYWVY 8 15 583.2724137255752 NaN 0 583.2730712890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _IFM(Oxidation (M))QYWVY_ ENST00000254579.10_1_11:6519677-6519737:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83507.1 NaN 918 1265 2182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2188 22.638 NaN 163600 35 0 45907 0.327 -1 NAAHQEALM 9 36 500.729585508408 999.444618083616 2 500.7294616699219 MULTI HCD FTMS 0 0 0 2187 110269.03125 0.46392708556294565 14 -0.1447010040283203 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 29.081581746732265 0.1154664336125038 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2777917670129 0 650.2777917670129 0 39.604093769761874 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 37 + NaN NaN 99091.1 NaN 919 1267 2187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2189 22.643 NaN 40447 35 0 4829.6 0.261 + 18390 MPQKERESI 9 28 559.2870513620511 1116.559549790902 2 559.2869873046875 MULTI HCD FTMS 0 0 0 2187 23261.2109375 0.658461318671938 9 -0.09190177917480469 2 Unmodified _MPQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 7.101721422024254 0.29718071671418667 1 MPQKE 5 4 36.454 0 0 3.2648 0 0 0 500.2477205865844 500.2477205865844 29.463950151760656 0 0 0 0 0 0 0 0 + MPQKE 3.2648 + + 21 + NaN NaN 80832.6 NaN 920 1267 2187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2190 22.646 NaN 49945 35 0 10439 0.264 + 4207 EVAPPEYHRK 10 30 409.21557638441413 1224.6248997534424 3 409.54949951171875 MULTI HCD FTMS 0 0 0 2187 3881.62158203125 0.026178872389792652 60 -0.6364974975585938 3 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 1.7422754331352037 0.46608156381052757 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79561.7 NaN 921 1267 2187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2192 22.652 NaN 19681 35 0 5470.6 0.412 + 23528 RNMKIIFC 8 27 512.7746915180676 1023.5348301029352 2 512.7741088867188 MULTI HCD FTMS 0 0 0 2191 4936.82568359375 0.3450307758164819 5 -0.052913665771484375 1 Unmodified _RNMKIIFC_ REV__ENSG00000186009|ENST00000335288|ATP4B 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84340.2 NaN 922 1268 2191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2194 22.66 NaN 71422 35 0 11768 0.327 + 21924 QEAVERSM 8 38 475.2240532534603 948.4335535737206 2 475.22369384765625 MULTI HCD FTMS 0 0 0 2193 35703.41015625 0.1117644332708077 76 -0.7968311309814453 1 Unmodified _QEAVERSM_ REV__ENSG00000072134|ENST00000314728|EPN2;REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF;REV__EPN2|p.T470Nfs*19|1|0.3|ENSG00000072134|chr17:19329636-19329637|-/A|frameshift_variant;REV__nc|ENSG00000072134|O95208-2|EPN2;REV__nc|ENSG00000072134|O95208-3|EPN2 10.073929032068715 0.5196730168178844 1 GEVR{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 31.159 0 0 3.2853 0 0 271.1136816028206 0 271.1136816028206 0 19.47621246364342 0 0 0 0 0 0.4247425010840047 0 GEVR{[MS]|[{M(Oxidation (M))|F}A]} 3.2853 - 63 + NaN NaN 81863.8 NaN 923 1269 2193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2195 22.664 NaN 29400 35 0 7572.6 0.261 + 4170 ETRAEFAER 9 12 554.7725410969604 1107.5305292607206 2 554.7725830078125 MULTI HCD FTMS 0 0 0 2193 16042.9921875 0.5863241902631353 6 -0.06236076354980469 2 Unmodified _ETRAEFAER_ CON__Q3SX28;ENSG00000140416|ENST00000403994|TPM1;ENSG00000143549|ENST00000651641|TPM3;ENSG00000167460|ENST00000643579|TPM4;ENSG00000198467|ENST00000645482|TPM2;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000198467|P07951-3|TPM2 2.9952420565917617 0.3283108881486655 1 E 1 8 6.9897 0 0 0.63111 0 0 457.23031061013313 518.2360323541624 975.4663429642956 0 0 0 0 0 0 0 0 0 + E 0.63111 + + 1 + NaN NaN 88431.9 NaN 924 1269 2193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2196 22.668 NaN 16363 35 0 4269.3 0.261 + 27984 TFHQAAAAESF 11 13 590.2750678898041 1178.535582846408 2 590.2742919921875 MULTI HCD FTMS 0 0 0 2193 3603.0634765625 0.46119313385998034 -4 0.04247474670410156 3 Unmodified _TFHQAAAAESF_ REV__ENSG00000146950|ENST00000380913|SHROOM2 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82080.3 NaN 925 1269 2193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2198 22.673 NaN 83570 35 0 11117 0.411 + 25249 SASSVTVTR 9 43 454.24569400117167 906.4768350691434 2 454.2459411621094 MULTI HCD FTMS 0 0 0 2197 32107.4140625 0.07871677537395816 22 -0.23273086547851562 1 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 27.223235318498237 0.1251536255799991 1 {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 44.403 0 0 4.8984 4.8984 90.637 0 0 0 29.30400924012389 7.147642715192504 7.147642715192504 44.402821967095605 0 0.7302046884880937 0 0.4247425010840047 0 + + {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.8984 + + 59 + NaN NaN 114580.9 NaN 926 1270 2197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2200 22.682 NaN 57949 35 0 10456 0.327 + -1 EEGQYCWW 8 16 579.2210922553019 1156.4276315774036 2 579.220703125 MULTI HCD FTMS 0 0 0 2199 7555.31640625 0.06461008354517486 25 -0.2693748474121094 1 Carbamidomethyl (C) _EEGQYC(Carbamidomethyl (C))WW_ REV__nc|ENSG00000156504|Q7Z309-4|PABIR2;REV__nc|ENSG00000156504|Q7Z309-5|PABIR2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102169.3 NaN 927 1271 2199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2201 22.686 NaN 28869 35 0 4103.6 0.261 + -1 CPPQPMKHLS 10 23 597.7914734476916 1193.568393962183 2 597.7920532226562 MULTI HCD FTMS 0 0 0 2199 5936.74853515625 0.2661598059379363 9 -0.091766357421875 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PPQPMKHLS_ REV__ENST00000492001.1_1_7:44796309-44796525:+|nuORF 1.6526216038709556 0.46655611578153744 1 {[ES]|[DT]|[{I|L}C]}A 3 -1 10.458 0 0 0.87616 0 0 0 903.4336719195303 903.4336719195303 10.45757490560675 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}A 0.87616 - 2 + NaN NaN 80437.8 NaN 928 1271 2199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2203 22.691 NaN 29462 35 0 3598 0.327 -1 WKMEFDTR 8 21 564.7608525575866 1127.5071521819732 2 564.76025390625 MULTI HCD FTMS 0 0 0 2202 11121.9970703125 1 0 0 1 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82768.4 NaN 929 1272 2202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2204 22.696 NaN 31763 35 0 3715.7 0.261 + -1 RMHVVLMY 8 22 540.7697218591968 1079.5248907851935 2 540.7694702148438 MULTI HCD FTMS 0 0 0 2202 7974.44287109375 0.15718113141825768 18 -0.197052001953125 2 2 Oxidation (M) _RM(Oxidation (M))HVVLM(Oxidation (M))Y_ REV__ENSG00000074047|ENST00000361492|GLI2;REV__ENSG00000106571|ENST00000395925|GLI3;REV__ENSG00000111087|ENST00000228682|GLI1;REV__ENST00000438299.5_1_2:121728002-121748192:+|nuORF;REV__ENST00000452692.5_1_2:121728002-121748192:+|nuORF;REV__GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant;REV__GLI2|p.S690Afs*5|1|0.24|ENSG00000074047|chr2:120986383-120986383|C/-|frameshift_variant;REV__nc|ENSG00000074047|P10070-1|GLI2;REV__nc|ENSG00000074047|P10070-2|GLI2;REV__nc|ENSG00000074047|P10070-3|GLI2;REV__nc|ENSG00000074047|P10070-4|GLI2;REV__nc|ENSG00000074047|P10070|GLI2;REV__nc|ENSG00000111087|P08151-2|GLI1;REV__nc|ENSG00000111087|P08151-3|GLI1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78782.5 NaN 930 1272 2202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2205 22.699 NaN 11420 35 0 4835.5 0.261 -1 MRRFVYCK 8 8 601.3017859345349 1200.5890189358697 2 601.30126953125 MULTI HCD FTMS 0 0 0 2202 4793.91552734375 0.3024827089605313 -9 0.08955192565917969 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MRRFVYC(Carbamidomethyl (C))K_ ENSG00000144278|ENST00000392825|GALNT13;GALNT13|p.T244Ifs*10|1|0.2|ENSG00000144278|chr2:154245856-154245856|C/-|frameshift_variant;nc|ENSG00000144278|Q8IUC8-2|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93187.5 NaN 931 1272 2202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2208 22.712 NaN 324280 35 0 39765 0.327 + 18881 NAESGRGQVM 10 58 524.7455058745364 1047.4764588158728 2 524.7454833984375 MULTI HCD FTMS 0 0 0 2207 182060.09375 0.18616201076545744 19 -0.20679855346679688 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 81.9152076656658 0.003466872489127602 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM 10 0 + 75.251 0 0 7.184 7.184 91.267 0 0 0 10.532438866630343 10.532438866630343 10.532438866630343 10.532438866630343 0 2.2302046884880937 1.5228787452803376 0 1.5044321917401078 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM;NAES{[NV]|[RG]}{[QG]|[NA]}VM;{[QG]|[NA]}ES{[NV]|[RG]}V{[QG]|[NA]}M;{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}M;{[QG]|[NA]}ES{[NV]|[RG]}VMAN;NAE{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VM;[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VM;[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]HTN 7.184;6.1785;5.9176;5.7495;5.6752;5.5818;2.5746;1.3043 +;+;-;-;-;-;-;- + 233 NaN NaN 132143.9 NaN 932 1274 2207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2209 22.717 NaN 31096 35 0 11952 0.261 + -1 LHNCCEECTKS 11 20 479.8551598378587 NaN 0 479.8549499511719 PEAK HCD FTMS 0 0 0 2207 1784.76953125 0.25120297385404183 26 -0.2784080505371094 2 3 Carbamidomethyl (C) _LHNC(Carbamidomethyl (C))C(Carbamidomethyl (C))EEC(Carbamidomethyl (C))TKS_ REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF 0.08335046087909445 0.3418837022149213 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84616.7 NaN 933 1274 2207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2211 22.722 NaN 37422 35 0 5545 0.411 -1 YRACDALYP 9 33 564.7608525575866 1127.5071521819732 2 564.7605590820312 MULTI HCD FTMS 0 0 0 2210 5234.822265625 0.4706728685982215 3 -0.024164199829101562 1 Carbamidomethyl (C) _YRAC(Carbamidomethyl (C))DALYP_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 4.75600775471527 0.31496297302216103 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91545 NaN 934 1275 2210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2213 22.73 NaN 33143 35 0 4285.5 0.411 -1 0 25 485.3587430909652 484.35146662436523 1 485.3584289550781 MULTI HCD FTMS 0 0 0 2212 7488.26953125 0.1446900371507536 53 -0.5653553009033203 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109493.6 NaN 935 1276 2212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2215 22.739 NaN 92521 35 0 11912 0.411 + 27568 TADPSHQTM 9 50 494.21397087573774 986.4133888182755 2 494.2135925292969 MULTI HCD FTMS 0 0 0 2214 61095.234375 0.5658787731872601 13 -0.15003585815429688 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 38.175570920033316 0.07371992880350783 1 [TA]D 3 6 41.254 0 0 4.1823 0 0 0 696.2789352890441 696.2789352890441 16.433852901485295 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 + [TA]D 4.1823 + + 46 + NaN NaN 129571.3 NaN 936 1277 2214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2217 22.747 NaN 22314 35 0 3986.5 0.327 + 21878 QCQGAVEEKV 10 17 545.7635001173448 1089.5124473014896 2 545.763427734375 MULTI HCD FTMS 0 0 0 2216 14328.1240234375 0.6542562645978041 -5 0.04184150695800781 1 Unmodified _QCQGAVEEKV_ REV__nc|ENSG00000166473|Q7Z442-3|PKD1L2;REV__nc|ENSG00000166473|Q7Z442|PKD1L2 2.9952420565917617 0.4594494122822477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82534.7 NaN 937 1278 2216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2218 22.751 NaN 45407 35 0 7016 0.261 + 12113 KKKKKKKKKSF 11 17 469.32838077551366 NaN 0 469.3284606933594 PEAK HCD FTMS 0 0 0 2216 11258.9052734375 0.572968804558576 -150 1.5989952087402344 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109143.2 NaN 938 1278 2216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2219 22.754 NaN 17117 35 0 6337 0.261 -1 ATEALKKMYM 10 12 601.3017859345349 1200.5890189358697 2 601.3027954101562 MULTI HCD FTMS 0 0 0 2216 14771.09375 0.9320148480558725 -3 0.024164199829101562 3 Oxidation (M) _ATEALKKM(Oxidation (M))YM_ ENSG00000006007|ENST00000353258|GDE1 1.4819007175156935 0.4674597685733628 1 WW{I|L} 3 -1 10.458 0 0 0.87104 0 0 0 712.3171480768186 712.3171480768186 10.45757490560675 0 0 0 0 0 0 0 0 WW{I|L} 0.87104 - 1 + NaN NaN 94605 NaN 939 1278 2216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2220 22.758 NaN 12875 35 0 4142.5 0.261 + 26273 SRDDIRSLCD 10 11 590.2750678898041 1178.535582846408 2 590.276611328125 MULTI HCD FTMS 0 0 0 2216 6499.06005859375 0.8318815072407971 3 -0.036685943603515625 4 Unmodified _SRDDIRSLCD_ ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101199.2 NaN 940 1278 2216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2222 22.763 NaN 109400 35 0 29266 0.327 -1 NAAHQEALM 9 29 500.729585508408 999.444618083616 2 500.72943115234375 MULTI HCD FTMS 0 0 0 2221 72080.03125 0.30325721053342936 26 -0.2805652618408203 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 21.536976647645854 0.1742816388551942 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2780969427941 0 650.2780969427941 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 56 + NaN NaN 95610.3 NaN 941 1279 2221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2223 22.768 NaN 37823 35 0 10621 0.261 + 34035 YMVGIVIY 8 23 479.25921886492296 956.5038847966459 2 479.2437744140625 MULTI HCD FTMS 0 0 0 2221 1530.3253173828125 0.020646464678271793 -16 0.16122055053710938 2 Unmodified _YMVGIVIY_ REV__ENSG00000163354|ENST00000368424|DCST2;REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101066.5 NaN 942 1279 2221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2225 22.773 NaN 27208 35 0 5133.3 0.327 + -1 CWGEHTYF 8 17 550.2171889572876 NaN 0 550.2173461914062 PEAK HCD FTMS 0 0 0 2224 6448.28076171875 0.5504157101691424 31 -0.32787513732910156 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79085.1 NaN 943 1280 2224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2226 22.778 NaN 27618 35 0 8198.4 0.261 + 25321 SCMKKGRKS 9 15 512.7743530273438 NaN 0 512.7743530273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SCMKKGRKS_ REV__ENSG00000154767|ENST00000285021|XPC;REV__nc|ENSG00000154767|Q01831-2|XPC 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79533.5 NaN 944 1280 2224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2228 22.783 NaN 69660 35 0 9526.4 0.327 -1 EAAGEVRAM 9 33 475.2240532534603 948.4335535737206 2 475.22357177734375 MULTI HCD FTMS 0 0 0 2227 35944.484375 0.11251908172922898 88 -0.9138832092285156 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 18.1463463914782 0.20357593197100715 1 {[CP]|[EA]}AWVR 6 -1 29.966 0 0 3.1595 0 0 0 233.06047998599846 233.06047998599846 24.4812969097282 0 0 0 0 0.3054621874040891 0 0 0 {[CP]|[EA]}AWVR 3.1595 - 36 + NaN NaN 91388.7 NaN 945 1281 2227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2229 22.788 NaN 51844 35 0 11980 0.261 -1 MMGTCRPF 8 23 508.2116229519609 NaN 0 508.2112731933594 PEAK HCD FTMS 0 0 0 2227 22101.0703125 0.4656154506793792 -386 3.760183334350586 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))MGTC(Carbamidomethyl (C))RPF_ ENSG00000214756|ENST00000532971|CSKMT;ENST00000398922.6_1_11:62433120-62433833:+|nuORF;ENST00000529868.1_1_11:62433120-62433501:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94915.1 NaN 946 1281 2227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2230 22.791 NaN 17065 35 0 4123.5 0.261 -1 VCPSLREKE 9 13 559.2870513620511 1116.559549790902 2 559.287109375 MULTI HCD FTMS 0 0 0 2227 9280.5712890625 0.26270761335014964 23 -0.2522087097167969 3 Carbamidomethyl (C) _VC(Carbamidomethyl (C))PSLREKE_ ENST00000574871.1_1_17:4798909-4799053:+|nuORF 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88442.6 NaN 947 1281 2227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2231 22.794 NaN 25645 35 0 5861.3 0.261 + 23691 RQMMQWKT 8 19 554.7725410969604 1107.5305292607206 2 555.2737426757812 MULTI HCD FTMS 0 0 0 2227 5776.6484375 0.36037737929636193 10 -0.11521720886230469 4 Unmodified _RQMMQWKT_ ENST00000468361.1_1_3:88650468-88650549:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 81995.2 NaN 948 1281 2227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2232 22.798 NaN 12774 35 0 4430.8 0.261 + 28276 TLNSNWHFF 9 10 583.2724137255752 NaN 0 583.272216796875 PEAK HCD FTMS 0 0 0 2227 3746.5927734375 0.6474890189620155 22 -0.23564529418945312 5 Unmodified _TLNSNWHFF_ REV__ENSG00000150337|ENST00000369168|FCGR1A;REV__ENST00000472543.1_1:120928502-120934612:-|nuORF;REV__nc|ENSG00000150337|P12314-2|FCGR1A;REV__nc|ENSG00000291135|Q92637-2|FCGR1BP;REV__nc|ENSG00000291135|Q92637-3|FCGR1BP;REV__nc|ENSG00000291135|Q92637|FCGR1BP 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81056.8 NaN 949 1281 2227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2234 22.803 NaN 18190 35 0 3936.2 0.327 + -1 KCKQHCIH 8 15 527.2567749023438 NaN 0 527.2567749023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _KC(Carbamidomethyl (C))KQHCIH_ REV__ENSG00000107771|ENST00000372088|CCSER2;REV__ENST00000498300.5_1_10:86198319-86273265:+|nuORF;REV__nc|ENSG00000107771|Q9H7U1-4|CCSER2;REV__nc|ENSG00000107771|Q9H7U1|CCSER2 0.7936320650641473 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.37809 0 0 712.4513308576187 176.99543176822502 889.4467626258437 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.37809 + + 1 + NaN NaN 82583.9 NaN 950 1282 2233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2236 22.811 NaN 231880 35 0 22916 0.327 + 18882 NAESGRGQVM 10 54 524.7455058745364 1047.4764588158728 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2235 94218.203125 0.09634099259854031 28 -0.2903423309326172 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 59.05245873256422 0.044867740978679724 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM 10 0 + 66.106 0 0 6.311 6.311 89.749 0 0 0 10.667790332608575 47.003187623076954 10.667790332608575 11.021825181113627 0 1.9247425010840047 1.3979400086720375 0 1.0994850021680094 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM;NAE{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VM;{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}M;NAE{[QG]|[NA]}[C(Carbamidomethyl (C))R][{I|L}T];[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VM;NA{[QG]|[NA]}E[C(Carbamidomethyl (C))R][{I|L}T];[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]HTN;[{M(Oxidation (M))|F}T]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{I|L}T] 6.311;5.2587;4.8995;3.0376;2.5216;2.1048;1.5631;0.39659 +;-;-;-;-;-;-;- + 301 NaN NaN 123696.7 NaN 951 1283 2235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2237 22.815 NaN 51987 35 0 9446.3 0.261 + -1 VQQVCLNP 8 32 479.24433346543657 NaN 0 479.2584228515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _VQQVC(Carbamidomethyl (C))LNP_ REV__ENST00000498214.5_1_3:9965818-9972589:+|nuORF 2.302733041254933 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.73078 0 0 614.2826599955232 226.08298669986564 840.3656466953888 0 0 0 0 0 0 0 0 0 {I|L} 0.73078 + + 2 + NaN NaN 93347.3 NaN 952 1283 2235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2238 22.819 NaN 27927 35 0 5347.9 0.261 -1 ARYRCCRS 8 16 564.7608525575866 1127.5071521819732 2 564.7604370117188 MULTI HCD FTMS 0 0 0 2235 5772.2041015625 0.518989895885696 11 -0.11862373352050781 3 2 Carbamidomethyl (C) _ARYRC(Carbamidomethyl (C))C(Carbamidomethyl (C))RS_ ENSG00000175646|ENST00000312511|PRM1 4.75600775471527 0.5349361699807423 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81626.1 NaN 953 1283 2235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2239 22.822 NaN 45807 35 0 9383.1 0.261 + 501 AMWFRTYM 8 32 553.2509765625 NaN 0 553.2509765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AMWFRTYM_ ENSG00000167861|ENST00000425042|HID1;ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-2|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82349.2 NaN 954 1283 2235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2241 22.828 NaN 62778 35 0 12444 0.411 + 19694 NWVASGLPGG 10 42 479.24433346543657 NaN 0 479.2588195800781 PEAK HCD FTMS 0 0 0 2240 1267.458984375 0.3573437393094826 -1 0.016542434692382812 1 Unmodified _NWVASGLPGG_ REV__ENSG00000060656|ENST00000373779|PTPRU;REV__nc|ENSG00000060656|Q92729-3|PTPRU;REV__nc|ENSG00000060656|Q92729-4|PTPRU;REV__nc|ENSG00000060656|Q92729|PTPRU;REV__PTPRU|p.Q740Rfs*47|1|0.23|ENSG00000060656|chr1:29284767-29284767|C/-|frameshift_variant 4.3292370932331545 0.3364790620948225 1 A{I|L}{[QS]|[NT]}G{I|L} 6 -1 18.416 0 0 1.9254 0 0 158.0418763041169 226.08301721744377 384.1248935215607 0 0 0 0 0 0 0 0 0 A{I|L}{[QS]|[NT]}G{I|L} 1.9254 - 12 + NaN NaN 99048.7 NaN 955 1284 2240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2243 22.836 NaN 209810 35 0 19849 0.327 + 18883 NAESGRGQVM 10 54 524.7455058745364 1047.4764588158728 2 524.7454833984375 MULTI HCD FTMS 0 0 0 2242 82089.0546875 0.08393856757783087 30 -0.3101329803466797 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 44.391923383255 0.10729416141032597 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM 10 0 + 44.269 0 0 4.2263 4.2263 86.404 0 0 0 0.09078135193536951 16.310603745588068 0.09078135193536951 11.532125137753432 0 2.305462187404089 0 0 0 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM;{[QG]|[NA]}ES{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}M;{[QG]|[NA]}ES{[NV]|[RG]}{[ET]|[MV]}AN;{[QG]|[NA]}ES{[NV]|[RG]}[QA]{[ES]|[DT]|[{I|L}C]} 4.2263;3.1253;2.2913;1.308 +;-;-;- + 111 NaN NaN 117425.2 NaN 956 1285 2242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2244 22.84 NaN 32191 35 0 7853.8 0.261 + 7284 FTKGTGTEGQL 11 23 569.7887438360455 1137.5629347388908 2 569.7890014648438 MULTI HCD FTMS 0 0 0 2242 8997.2158203125 0.9504703890912978 -1 0.008218765258789062 2 Unmodified _FTKGTGTEGQL_ REV__tr|U7SVE2|U7SVE2_FUSNUPASdomainS-boxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01227PE=4SV=1 0.9622753412299311 0.4147004537482263 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89740.6 NaN 957 1285 2242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2245 22.843 NaN 51730 35 0 8674.5 0.261 + -1 DCERFNMEG 9 22 579.2210922553019 1156.4276315774036 2 579.2215576171875 MULTI HCD FTMS 0 0 0 2242 6229.3701171875 0.05327111428084674 39 -0.4078559875488281 3 Carbamidomethyl (C) _DC(Carbamidomethyl (C))ERFNMEG_ REV__CON__Q28085 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95971.2 NaN 958 1285 2242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2247 22.849 NaN 16464 35 0 2863.1 0.411 -1 MLRCLYHW 8 27 590.2750678898041 1178.535582846408 2 590.2738647460938 MULTI HCD FTMS 0 0 0 2246 4863.990234375 0.6225921119202448 10 -0.10206031799316406 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))LRCLYHW_ ENSG00000072756|ENST00000251607|TRNT1;ENST00000465998.1_1_3:3170712-3170940:+|nuORF;ENST00000469632.1_1_3:3170712-3173035:+|nuORF;nc|ENSG00000072756|Q96Q11-2|TRNT1;nc|ENSG00000072756|Q96Q11-3|TRNT1 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 85589.6 NaN 959 1286 2246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2249 22.857 NaN 46693 35 0 4276.3 0.411 + 27569 TADPSHQTM 9 40 494.21397087573774 986.4133888182755 2 494.21356201171875 MULTI HCD FTMS 0 0 0 2248 21246.037109375 0.19678591198700393 23 -0.23399925231933594 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 22.736283301280096 0.1639198954644489 1 [TA]D 3 6 41.254 0 0 4.1823 0 0 0 696.2788155955496 696.2788155955496 32.30204688488094 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 + [TA]D 4.1823 + + 24 + NaN NaN 100022.4 NaN 960 1287 2248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2251 22.865 NaN 33423 35 0 8190.4 0.327 -1 0 21 485.3587430909652 484.35146662436523 1 485.35858154296875 MULTI HCD FTMS 0 0 0 2250 6931.8193359375 0.1339381806508888 65 -0.6643199920654297 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85647.7 NaN 961 1288 2250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2252 22.87 NaN 21799 35 0 5946.1 0.261 -1 RYKMMCVK 8 15 545.7635001173448 1089.5124473014896 2 545.762939453125 MULTI HCD FTMS 0 0 0 2250 12652.9453125 0.5777636153047817 5 -0.05420684814453125 2 2 Oxidation (M) _RYKM(Oxidation (M))M(Oxidation (M))CVK_ ENST00000377445.5_9:69238165-69262487:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 102938.6 NaN 962 1288 2250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2253 22.873 NaN 18051 35 0 4823.3 0.261 -1 SCVFWLHKC 9 16 590.2750678898041 1178.535582846408 2 590.2750244140625 MULTI HCD FTMS 0 0 0 2250 4571.958984375 0.585212030151316 12 -0.12581634521484375 3 Carbamidomethyl (C) _SCVFWLHKC(Carbamidomethyl (C))_ chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|19;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|18;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|17;chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|19;chr5:90822097-90965415|211|21.16|0.18|6.88|+|2|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|17;chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|18;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|307|3|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|239|2|anti-sense;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|74|1|anti-sense 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95592.7 NaN 963 1288 2250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2255 22.879 NaN 51073 35 0 8577.8 0.327 -1 SPSPMDPHM 9 23 515.7021432611399 1029.3897335890797 2 515.701904296875 MULTI HCD FTMS 0 0 0 2254 15809.7119140625 0.6705678323675791 -32 0.3509197235107422 1 2 Oxidation (M) _SPSPM(Oxidation (M))DPHM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 2.0597508629832335 0.3354026079994024 1 N 1 -1 2.4743 0 0 0.24036 0 0 455.59897538771094 456.7158602350219 912.3148356227329 0 0 0 0 0 0 0 0 0 N 0.24036 - 1 + NaN NaN 96719.2 NaN 964 1289 2254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2256 22.883 NaN 15412 35 0 4656.1 0.261 -1 LGWEIRMHC 9 15 601.2839523642581 NaN 0 601.3013305664062 PEAK HCD FTMS 0 0 0 2254 1721.3414306640625 0.3728556060855731 -1 0.013311386108398438 2 Carbamidomethyl (C) _LGWEIRMHC(Carbamidomethyl (C))_ chr2:208360237-208428201|177|10.51|0.52|4.34|+|ENST00000617735|PTH2R,PTH2R;ENSG00000144407|ENST00000272847|PTH2R 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90164.4 NaN 965 1289 2254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2258 22.889 NaN 77927 35 0 23289 0.326 -1 NAAHQEALM 9 29 500.729585508408 999.444618083616 2 500.72943115234375 MULTI HCD FTMS 0 0 0 2257 65468.609375 0.2754414435213667 37 -0.3865165710449219 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 26.268140514670165 0.13340543277302316 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2771508978723 0 650.2771508978723 0 30.74031267727719 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 39 + NaN NaN 98626.9 NaN 966 1290 2257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2259 22.893 NaN 52002 35 0 11919 0.261 + 12114 KKKKKKKKKSF 11 17 469.32838077551366 NaN 0 469.3288269042969 PEAK HCD FTMS 0 0 0 2257 11068.6572265625 0.5632870288139356 -138 1.5337257385253906 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 {M(Oxidation (M))|F} 1 10 2.2185 0 0 0.23686 0 0 302.7708840102086 483.80597864322505 786.5768626534336 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.23686 + + 1 + NaN NaN 105821.9 NaN 967 1290 2257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2262 22.906 NaN 54604 35 0 7144.8 0.327 -1 NDVEVRAM 8 33 475.2240532534603 948.4335535737206 2 475.2237243652344 MULTI HCD FTMS 0 0 0 2261 19910.42578125 0.06232674817008601 99 -1.0412273406982422 1 Oxidation (M) _NDVEVRAM(Oxidation (M))_ ENST00000465703.5_1_6:31929724-31930734:+|nuORF 15.847184025352803 0.47719562709667024 1 {I|L}EVR{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 30.891 0 0 3.257 0 0 215.06412105594558 0 215.06412105594558 0 24.436974992327123 0 0 0 0.2742275032520141 0 0.4247425010840047 0 {I|L}EVR{[MS]|[{M(Oxidation (M))|F}A]} 3.257 - 21 + NaN NaN 102524.1 NaN 968 1292 2261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2263 22.91 NaN 28372 35 0 4275.8 0.261 + 3370 EEQSAIGRT 9 19 495.7461848994925 989.477816865785 2 495.7464294433594 MULTI HCD FTMS 0 0 0 2261 11026.74609375 0.3392211970062077 19 -0.19512367248535156 2 Unmodified _EEQSAIGRT_ REV__ENSG00000165164|ENST00000378653|CFAP47;REV__nc|ENSG00000165164|Q6ZTR5-1|CFAP47;REV__nc|ENSG00000165164|Q6ZTR5-2|CFAP47;REV__nc|ENSG00000165164|Q6ZTR5-6|CFAP47 2.9952420565917617 0.3283108881486655 1 A 1 -1 0.9691 0 0 0.097941 0 0 473.17411921129127 442.24213586978755 915.4162550810788 0 0 0 0 0 0 0 0 0 A 0.097941 + + 9 + NaN NaN 83165.6 NaN 969 1292 2261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2264 22.914 NaN 24371 35 0 10275 0.261 + 30327 VLAFVGLMFI 10 14 555.3250463205756 NaN 0 555.3251342773438 PEAK HCD FTMS 0 0 0 2261 4221.1201171875 0.9413519654116729 -3 0.027622222900390625 3 Unmodified _VLAFVGLMFI_ REV__ENSG00000173285|ENST00000641535|OR10K1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97039.2 NaN 970 1292 2261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2266 22.919 NaN 18814 35 0 5641.6 0.327 + 858 AWPTSWGWW 9 14 588.7663494552066 NaN 0 588.7657470703125 PEAK HCD FTMS 0 0 0 2265 2918.242431640625 0.5696484847398849 -14 0.15614891052246094 1 Unmodified _AWPTSWGWW_ REV__ENST00000064780.6_1_11:73107380-73107611:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94529 NaN 971 1293 2265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2267 22.924 NaN 11398 35 0 4175.9 0.261 -1 WGKWRCLC 8 8 583.2717895507812 NaN 0 583.2717895507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _WGKWRC(Carbamidomethyl (C))LC(Carbamidomethyl (C))_ nc|ENSG00000284491|A0A1W2PP97|THSD8 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84475.4 NaN 972 1293 2265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2269 22.929 NaN 32159 35 0 3856.8 0.327 -1 MSENMQCLV 9 27 564.229845611429 NaN 0 564.22900390625 PEAK HCD FTMS 0 0 0 2268 1760.6053466796875 0.21541001159696105 -19 0.20702743530273438 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))SENMQC(Carbamidomethyl (C))LV_ chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1 0.6014990680409731 0.29233206172879045 1 G 1 -1 3.9794 0 0 0.35327 0 0 388.1076271586017 678.2760714166624 1066.3836985752641 0 0 0 0 0 0 0 0 0 G 0.35327 - 1 + NaN NaN 102992.8 NaN 973 1294 2268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2270 22.934 NaN 31451 35 0 6129.8 0.261 + 23332 RKEVQNQLV 9 20 557.3220396215205 1112.629526309841 2 557.32275390625 MULTI HCD FTMS 0 0 0 2268 3440.4560546875 0.16111510554810682 -8 0.08060836791992188 2 Unmodified _RKEVQNQLV_ ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A 1.844237919475145 0.33703635659052655 1 V 1 8 4.6041 0 0 0.4138 0 0 413.22670756159715 597.3111666315061 1010.5378741931033 0 0 0 0 0 0 0 0 0 + V 0.4138 + + 1 + NaN NaN 81417.5 NaN 974 1294 2268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2271 22.937 NaN 16460 35 0 4977.3 0.261 + -1 PRWLWCWR 8 14 630.316572534051 NaN 0 630.3165893554688 PEAK HCD FTMS 0 0 0 2268 1669.3829345703125 0.3268852644753184 -2 0.023405075073242188 3 Carbamidomethyl (C) _PRWLWC(Carbamidomethyl (C))WR_ REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87496.5 NaN 975 1294 2268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2273 22.943 NaN 156490 35 0 44541 0.411 + 28038 TGAIPAGGWQ 10 36 479.24445309480603 NaN 0 479.2590026855469 PEAK HCD FTMS 0 0 0 2272 2259.773681640625 0.3801434486066864 -2 0.023389816284179688 1 Unmodified _TGAIPAGGWQ_ ENST00000541990.5_1_1:155175040-155177685:-|nuORF 9.38312468134398 0.33215363477037435 1 {I|L}A 2 8 10.969 0 0 1.1468 0 0 614.2839671331182 155.04631982974846 769.3302869628666 0 0 0 0 0 0 0 0 0 {I|L}A 1.1468 - 11 + NaN NaN 130176.2 NaN 976 1295 2272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2276 22.958 NaN 101910 35 0 9157.7 0.411 + 18884 NAESGRGQVM 10 50 524.7455058745364 1047.4764588158728 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2275 46320.15234375 0.04736377160782834 42 -0.44057464599609375 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 59.05245873256422 0.044867740978679724 1 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM 10 0 + 63.275 0 0 6.0407 6.0407 91.056 0 0 0 11.077184142563468 45.31620601977153 11.077184142563468 20.13628443975044 0 2.25 0 0 1.110924374808178 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM;NAE{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VM;NAES[RV]{[QN]|[E{I|L}]|[KN]}M;[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VM;[{M(Oxidation (M))|F}T]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VM 6.0407;4.1183;3.9502;2.1422;1.2783 +;-;-;-;- + 199 NaN NaN 112627.8 NaN 977 1297 2275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2278 22.966 NaN 19685 35 0 6126.1 0.411 + -1 RCSISAKGLM 10 13 569.7887438360455 1137.5629347388908 2 569.7883911132812 MULTI HCD FTMS 0 0 0 2277 1351.0010986328125 0.142720433245726 12 -0.12461280822753906 1 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))SISAKGLM(Oxidation (M))_ REV__CON__Q28065 1.3295316138638542 0.46826628246186464 1 G 1 -1 6.9897 0 0 0.61445 0 0 568.7428186273659 508.78217493228755 1077.5249935596535 0 0 0 0 0 0 0 0 0 G 0.61445 + + 2 + NaN NaN 94663.8 NaN 978 1298 2277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2280 22.981 NaN 53401 35 0 7736.1 0.327 + 30258 VKEKELNKL 9 27 550.8374049747488 1099.6602570162975 2 550.8369140625 MULTI HCD FTMS 0 0 0 2279 13875.44140625 0.2843057341970019 -10 0.10255813598632812 1 Unmodified _VKEKELNKL_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;DSP|p.L319P|1|0.2|ENSG00000096696|chr6:7566393-7566393|T/C|missense_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 89406.5 NaN 979 1299 2279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2281 22.985 NaN 35739 35 0 8193.9 0.261 + 19234 NKLSLNLYE 9 21 547.298024615175 1092.58149629715 2 547.2982788085938 MULTI HCD FTMS 0 0 0 2279 10055.552734375 0.6769523094736505 4 -0.037937164306640625 2 Unmodified _NKLSLNLYE_ ENSG00000107331|ENST00000341511|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;ENST00000487109.5_1_9:139906084-139911410:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2 1.6526216038709556 0.33848895094777925 1 S 1 8 6.9897 0 0 0.63974 0 0 650.3221406836718 352.19834314517817 1002.52048382885 0 0 0 0 0 0 0 0 0 + S 0.63974 + + 1 + NaN NaN 87153.1 NaN 980 1299 2279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2283 22.991 NaN 12931 35 0 2434.4 0.411 + 2109 DFETGLGPWN 10 27 568.2561466605747 1134.4977403879493 2 568.7564697265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _DFETGLGPWN_ ENSG00000177943|ENST00000317446|MAMDC4;ENST00000485732.5_1_9:139748116-139749417:+|nuORF;nc|ENSG00000177943|Q6UXC1-3|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4 1.4819007175156935 0.4674597685733628 1 G 1 9 3.0989 0 0 0.27316 0 0 584.7621579678306 489.6997164361938 1074.4618744040245 0 0 0 0 0 0 0 0 0 + G 0.27316 + + 2 + NaN NaN 98050.4 NaN 981 1300 2282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2285 22.999 NaN 90474 35 0 9943.4 0.327 -1 IQHEKETM 8 30 516.2451141961787 1030.4756754591574 2 516.2446899414062 MULTI HCD FTMS 0 0 0 2284 22497.96875 0.22800827871461396 -13 0.13386154174804688 1 Oxidation (M) _IQHEKETM(Oxidation (M))_ ENST00000510337.1_1_5:122971848-122972142:+|nuORF 25.399314129420986 0.40691472774782006 1 ET{M(Oxidation (M))|F} 3 -1 37.976 0 0 3.6853 0 0 635.3392141327887 0 635.3392141327887 0 37.976146931408294 0 0 0 1.4247425010840047 0 0.3807196863200844 0 ET{M(Oxidation (M))|F} 3.6853 + + 14 + NaN NaN 120230 NaN 982 1301 2284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2286 23.003 NaN 30722 35 0 8179.4 0.261 -1 QAQQPMDGP 9 14 494.21397087573774 986.4133888182755 2 494.2137451171875 MULTI HCD FTMS 0 0 0 2284 2037.4830322265625 0.018871658492859752 37 -0.38992881774902344 2 Oxidation (M) _QAQQPM(Oxidation (M))DGP_ ENSG00000015532|ENST00000017003|XYLT2;nc|ENSG00000015532|Q9H1B5-2|XYLT2;XYLT2|p.G529Afs*78|1|0.35|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant 6.723162845929126 0.3000504726104499 1 D[PG] 3 -1 19.265 0 0 1.953 0 0 699.300584861525 0 699.300584861525 0 19.264771768807595 0 0 0 0.8807196863200843 0 0 0 D[PG] 1.953 + + 7 NaN NaN 86856.5 NaN 983 1301 2284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2288 23.009 NaN 59594 35 0 14593 0.327 -1 NAAHQEALM 9 17 500.729585508408 999.444618083616 2 500.7294006347656 MULTI HCD FTMS 0 0 0 2287 45477.73828125 0.1913352673878208 49 -0.5048408508300781 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 17.11289562659939 0.2125047172822487 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2787072943566 0 650.2787072943566 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 38 + NaN NaN 93455.7 NaN 984 1302 2287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2289 23.013 NaN 17566 35 0 4459.2 0.261 + -1 LHYPMWCL 8 19 568.2561466605747 1134.4977403879493 2 568.7578735351562 MULTI HCD FTMS 0 0 0 2287 4004.1181640625 0.4450481462337786 -9 0.0896759033203125 2 Carbamidomethyl (C),Oxidation (M) _LHYPM(Oxidation (M))WC(Carbamidomethyl (C))L_ REV__ENSG00000134817|ENST00000606794|APLNR 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98978 NaN 985 1302 2287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2291 23.019 NaN 46282 35 0 9040.8 0.327 + 12115 KKKKKKKKKSF 11 28 469.32838077551366 NaN 0 469.32855224609375 PEAK HCD FTMS 0 0 0 2290 7932.16015625 0.40366982507759525 -125 1.3978042602539062 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 W 1 11 5.4846 0 0 0.58555 0 0 600.6091713637243 146.9238222711547 747.532993634879 0 0 0 0 0 0 0 0 0 W 0.58555 - 1 + NaN NaN 102429.9 NaN 986 1303 2290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2292 23.023 NaN 31984 35 0 4300.3 0.261 -1 TAVKNDYEM 9 23 543.7422850276064 1085.4700171220127 2 543.741943359375 MULTI HCD FTMS 0 0 0 2290 10214.1923828125 0.02253809715716739 -18 0.18333053588867188 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103511.2 NaN 987 1303 2290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2293 23.027 NaN 24758 35 0 4743.7 0.261 + 23958 RVGLDWSTS 9 18 510.7587844874506 NaN 0 510.7591552734375 PEAK HCD FTMS 0 0 0 2290 4643.8515625 0.6365983856468624 -1 0.009923934936523438 3 Unmodified _RVGLDWSTS_ REV__ENST00000586572.1_3_19:2737154-2737346:-|nuORF 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82810.9 NaN 988 1303 2290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2294 23.03 NaN 12686 35 0 2591.2 0.261 -1 ADLKCQLHFA 10 12 601.8037719726562 NaN 0 601.8037719726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _ADLKC(Carbamidomethyl (C))QLHFA_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84400.4 NaN 989 1303 2290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2296 23.036 NaN 51979 35 0 7342.8 0.411 -1 TVQAIAEAM 9 39 475.2383494179588 NaN 0 475.2235412597656 PEAK HCD FTMS 0 0 0 2295 1867.7471923828125 1 0 0 1 Oxidation (M) _TVQAIAEAM(Oxidation (M))_ ENST00000476939.5_1_1:60125899-60232874:+|nuORF 7.289230182591677 0.2599242500475609 1 AGEVRA 6 -1 29.641 0 0 3.1252 0 0 200.1067184821987 162.02263818912346 362.12935667132217 0 0 0 0 0 0 0 0 0 AGEVRA 3.1252 - 38 + NaN NaN 112484.5 NaN 990 1304 2295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2298 23.044 NaN 31558 35 0 3943.5 0.411 -1 0 22 485.3587430909652 484.35146662436523 1 485.3584899902344 MULTI HCD FTMS 0 0 0 2297 6969.54541015625 0.13466713238766634 82 -0.8722152709960938 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95762.3 NaN 991 1305 2297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2300 23.052 NaN 40110 35 0 10092 0.327 -1 FCKFCMLKLLN 11 23 472.91121380249 NaN 0 472.9112548828125 PEAK HCD FTMS 0 0 0 2299 9407.697265625 0.2710822068775177 523 -7.271989822387695 1 Carbamidomethyl (C) _FC(Carbamidomethyl (C))KFCMLKLLN_ ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-2|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112657.7 NaN 992 1306 2299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2301 23.056 NaN 37622 35 0 9002.1 0.261 -1 MMELLRCH 8 15 553.2512057772342 NaN 0 553.2512817382812 PEAK HCD FTMS 0 0 0 2299 3832.40625 0.7125445501031945 -5 0.052753448486328125 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))MELLRC(Carbamidomethyl (C))H_ DNAH17-TMC6|1|fusion;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17;ENST00000589793.1_1_17:76539878-76567391:-|nuORF;nc|ENSG00000187775|Q9UFH2-4|DNAH17 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85297.6 NaN 993 1306 2299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2303 23.062 NaN 72038 35 0 17053 0.411 + 25049 SAALPQSQR 9 35 479.25921886492296 956.5038847966459 2 479.2587585449219 MULTI HCD FTMS 0 0 0 2302 28391.828125 0.3830498455955034 12 -0.1324310302734375 1 Unmodified _SAALPQSQR_ ENSG00000151474|ENST00000357447|FRMD4A 11.494710602746466 0.2610445893512368 1 {[SA]|[TG]}A{I|L} 4 5 31.198 0 0 3.2617 0 0 0 611.2906002293433 611.2906002293433 22.245462655597095 0 0 0 0 1.5 0 0 0 + {[SA]|[TG]}A{I|L} 3.2617 + + 16 NaN NaN 114668.8 NaN 994 1307 2302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2305 23.07 NaN 31336 35 0 5186.9 0.411 -1 WFQEFCVI 8 30 564.7603535021145 NaN 0 564.7600708007812 PEAK HCD FTMS 0 0 0 2304 2048.18017578125 0.26356148394860834 9 -0.10621070861816406 1 Carbamidomethyl (C) _WFQEFC(Carbamidomethyl (C))VI_ ENST00000323851.11_1_8:134249992-134250097:-|nuORF 5.230669730166228 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101379.8 NaN 995 1308 2304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2307 23.078 NaN 50024 35 0 5165.3 0.327 -1 SSWYQLFLSM 10 30 426.53385039437177 1276.5797217833153 3 426.5336608886719 MULTI HCD FTMS 0 0 0 2306 12945.8876953125 0.5740663867712158 1 -0.013227462768554688 1 Oxidation (M) _SSWYQLFLSM(Oxidation (M))_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|199|1|anti-sense 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83497.5 NaN 996 1309 2306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2308 23.082 NaN 36736 35 0 5176.5 0.261 + 4248 EVGKVIQQGR 10 27 557.3220396215205 1112.629526309841 2 557.3219604492188 MULTI HCD FTMS 0 0 0 2306 10337.4658203125 0.4840991630950729 7 -0.08135986328125 2 Unmodified _EVGKVIQQGR_ ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1 3.2813086475875832 0.45793521633868084 1 V{I|L} 2 8 5.5732 0 0 0.5009 0 0 413.2238389092534 484.23008142642817 897.4539203356816 0 0 0 0 0 0 0 0 0 + V{I|L} 0.5009 + + 4 + NaN NaN 97927.5 NaN 997 1309 2306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2309 23.086 NaN 14605 35 0 4578.5 0.261 -1 TAHCKHCLPPG 11 14 639.2969909457423 NaN 0 639.296630859375 PEAK HCD FTMS 0 0 0 2306 3546.10888671875 0.6874809313933423 3 -0.03144073486328125 3 2 Carbamidomethyl (C) _TAHC(Carbamidomethyl (C))KHC(Carbamidomethyl (C))LPPG_ ENST00000566056.1_1_16:30965161-30965422:+|nuORF 0.35063188157827746 0.3411255017974031 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83793.2 NaN 998 1309 2306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2311 23.091 NaN 53564 35 0 8320.4 0.327 + 18885 NAESGRGQVM 10 33 524.7455058745364 1047.4764588158728 2 524.745361328125 MULTI HCD FTMS 0 0 0 2310 31080.681640625 0.03178094699942879 55 -0.5615348815917969 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 12.872603262515298 0.3907060291096084 1 VM 2 8 25.969 0 0 2.4792 0 0 799.3586107490394 0 799.3586107490394 0 7.4569033504329205 0 0 0 0.5 0 0 0 + VM 2.4792 + + 17 NaN NaN 98573.4 NaN 999 1310 2310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2312 23.096 NaN 50167 35 0 12108 0.261 -1 0 27 471.2194671300388 940.4243813268777 2 471.21942138671875 MULTI HCD FTMS 0 0 0 2310 10194.1044921875 0.3648218542723255 -6 0.05556678771972656 2 NaN NaN 1 A{I|L} 2 -1 25.217 0 0 2.6814 0 0 738.2970448224625 0 738.2970448224625 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 A{I|L} 2.6814 - 5 NaN NaN 108457.3 NaN 1000 1310 2310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2314 23.101 NaN 103880 35 0 9188.6 0.411 + 3348 EENKLVKKI 9 52 550.8374049747488 1099.6602570162975 2 550.8372192382812 MULTI HCD FTMS 0 0 0 2313 46066.50390625 0.9438958251127142 2 -0.018003463745117188 1 Unmodified _EENKLVKKI_ ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7 45.69961567697781 0.039180348357221985 1 KK{I|L} 3 6 27.92 0 0 2.5389 0 0 712.375369609813 0 712.375369609813 0 16.237125054200234 0 0 0 0.9247425010840047 0 0 0 + KK{I|L} 2.5389 + + 40 NaN NaN 121562.3 NaN 1001 1311 2313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2316 23.109 NaN 19615 35 0 3387.9 0.326 + -1 CLPKQCNIC 9 18 568.2561466605747 1134.4977403879493 2 568.2554321289062 MULTI HCD FTMS 0 0 0 2315 11506.33984375 0.7840792899846937 1 -0.00991058349609375 1 2 Carbamidomethyl (C) _CLPKQC(Carbamidomethyl (C))NIC(Carbamidomethyl (C))_ REV__sp|P03126|VE6_HPV16ProteinE6OS=Humanpapillomavirustype16OX=333760GN=E6PE=1SV=1 0.5247636613948944 0.34703895399870666 1 T 1 -1 6.2814 0 0 0.55368 0 0 549.7343869717369 480.6935213678344 1030.4279083395713 0 0 0 0 0 0.3807196863200844 0 0 0 T 0.55368 - 1 + NaN NaN 93099.3 NaN 1002 1312 2315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2317 23.114 NaN 30969 35 0 9381.9 0.261 + 15071 LLYGTLEER 9 14 547.298024615175 1092.58149629715 2 546.80078125 MULTI HCD FTMS 0 0 0 2315 1730.7127685546875 0.3803281079928031 10 -0.11089324951171875 2 Unmodified _LLYGTLEER_ REV__ENSG00000171777|ENST00000615439|RASGRP4;REV__ENST00000588708.5_1_19:38900682-38904049:-|nuORF;REV__ENST00000592322.5_1_19:38901850-38916815:-|nuORF;REV__nc|ENSG00000171777|Q8TDF6-2|RASGRP4;REV__nc|ENSG00000171777|Q8TDF6-5|RASGRP4;REV__nc|ENSG00000171777|Q8TDF6-6|RASGRP4;REV__nc|ENSG00000171777|Q8TDF6-7|RASGRP4;REV__nc|ENSG00000171777|Q8TDF6-8|RASGRP4;REV__nc|ENSG00000171777|Q8TDF6-9|RASGRP4 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93084.9 NaN 1003 1312 2315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2319 23.119 NaN 195130 35 0 31656 0.327 + 8587 HAVQTVETM 9 31 516.2451141961787 1030.4756754591574 2 516.2449951171875 MULTI HCD FTMS 0 0 0 2318 86963.296875 0.8813396379091654 -1 0.00991058349609375 1 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 40.23920728925047 0.06424668180817725 1 TVET{M(Oxidation (M))|F} 5 4 51.102 0 0 4.9591 0 0 435.22285659004064 0 435.22285659004064 0 46.49797211252192 0 0 0 1.774227503252014 0 0.3807196863200844 0 + TVET{M(Oxidation (M))|F} 4.9591 + + 51 NaN NaN 120934 NaN 1004 1313 2318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2320 23.124 NaN 33867 35 0 11380 0.261 + 34793 YQTVLTIAQG 10 17 547.298024615175 1092.58149629715 2 547.2977905273438 MULTI HCD FTMS 0 0 0 2318 5521.287109375 0.3716999113515976 18 -0.1942615509033203 2 Unmodified _YQTVLTIAQG_ REV__ENSG00000105671|ENST00000247003|DDX49 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83798.1 NaN 1005 1313 2318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2322 23.129 NaN 51792 35 0 12044 0.327 -1 NAAHQEALM 9 18 500.729585508408 999.444618083616 2 500.729248046875 MULTI HCD FTMS 0 0 0 2321 32889.375 0.13837313810387544 61 -0.639434814453125 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 13.90604991867851 0.24021115267848145 1 A{I|L}{M(Oxidation (M))|F} 3 -1 33.188 0 0 3.3206 0 0 650.2792260931848 0 650.2792260931848 0 27.703037561203843 0 0 0 1 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.3206 + + 14 + NaN NaN 83841.4 NaN 1006 1314 2321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2323 23.134 NaN 33719 35 0 5065.9 0.261 + 1784 CLVSLCLPHP 10 30 541.2801205113401 1080.54568808948 2 541.27978515625 MULTI HCD FTMS 0 0 0 2321 11095.71875 0.5539008861036692 1 -0.016584396362304688 2 Unmodified _CLVSLCLPHP_ REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF 1.4819007175156935 0.4674597685733628 1 T 1 -1 6.9897 0 0 0.64687 0 0 151.03715645061135 825.4155367486936 976.452693199305 0 0 0 0 0 0 0 0 0 T 0.64687 - 1 + NaN NaN 85863.1 NaN 1007 1314 2321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2324 23.137 NaN 27252 35 0 5357.7 0.261 -1 PLQMKKFW 8 16 547.298024615175 1092.58149629715 2 547.2984619140625 MULTI HCD FTMS 0 0 0 2321 1786.6551513671875 0.1202798456634206 19 -0.2017498016357422 3 Oxidation (M) _PLQM(Oxidation (M))KKFW_ ENSG00000114544|ENST00000360370|SLC41A3;ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84498.8 NaN 1008 1314 2321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2325 23.14 NaN 32856 35 0 7425.6 0.261 -1 CVQNMKPE 8 22 511.226925955209 NaN 0 511.2264709472656 PEAK HCD FTMS 0 0 0 2321 7591.3974609375 0.7895503896566097 2 -0.0300445556640625 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VQNM(Oxidation (M))KPE_ ENSG00000115267|ENST00000649979|IFIH1 2.0597508629832335 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89577.6 NaN 1009 1314 2321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2327 23.146 NaN 38737 35 0 4500.1 0.327 + 2528 DSSGLTVHR 9 28 486.24911991178834 970.4836868903767 2 486.24853515625 MULTI HCD FTMS 0 0 0 2326 9758.794921875 0.3242742125735766 -2 0.026548385620117188 1 Unmodified _DSSGLTVHR_ ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF 8.745405648335112 0.2847203663274469 1 TVHR 4 5 18.928 0 0 1.9504 0 0 459.19524802494544 0 459.19524802494544 0 14.948500216800937 0 0 0 0 0 0 0 + TVHR 1.9504 + + 20 + NaN NaN 87780.3 NaN 1010 1315 2326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2328 23.15 NaN 28516 35 0 4980.6 0.261 -1 LVCVYTMNC 9 18 559.7370637467975 1117.459574560395 2 559.7368774414062 MULTI HCD FTMS 0 0 0 2326 9297.58203125 0.488068754225421 -7 0.07599830627441406 2 Carbamidomethyl (C),Oxidation (M) _LVCVYTM(Oxidation (M))NC(Carbamidomethyl (C))_ ENST00000301923.13_2_22:40725130-40725280:+|nuORF 0.5247636613948944 0.34703895399870666 1 V 1 -1 6.9897 0 0 0.6255 0 0 841.1364982437918 174.23763452701408 1015.3741327708059 0 0 0 0 0 0 0 0 0 V 0.6255 + + 1 + NaN NaN 106697.3 NaN 1011 1315 2326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2329 23.154 NaN 32681 35 0 9151.3 0.261 -1 VTNMTHTDAV 10 17 552.752990760355 NaN 0 552.7520141601562 PEAK HCD FTMS 0 0 0 2326 4272.6953125 0.954578726607286 4 -0.04838752746582031 3 Oxidation (M) _VTNM(Oxidation (M))THTDAV_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93324.8 NaN 1012 1315 2326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2331 23.159 NaN 444340 35 0 63616 0.327 + 27785 TAVKNDYEM 9 63 543.7422850276064 1085.4700171220127 2 543.7421875 MULTI HCD FTMS 0 0 0 2330 347117 0.7659300292863971 -5 0.05801200866699219 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 124.953037156858 0.0009110518730163033 1 TAVKNDYE{M(Oxidation (M))|F} 9 0 + 121.46 0 0 11.189 11.189 94.271 0 0 0 103.21124409813045 16.478174818886373 16.478174818886373 9.208187539523749 0 3.079689690656103 1.2218487496163564 1.586696871556164 0 + + TAVKNDYE{M(Oxidation (M))|F};TAVKGGDYE{M(Oxidation (M))|F};[TA]VKNDYE{M(Oxidation (M))|F};[TA]VKGGDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]NDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]GGDYE{M(Oxidation (M))|F} 11.189;10.341;9.1739;8.3256;5.5618;4.7135 +;-;+;-;-;- + 294 + NaN NaN 160156.1 NaN 1013 1316 2330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2332 23.164 NaN 38768 35 0 7086.6 0.261 + 29446 TYTSNKVH 8 25 475.2383479147331 NaN 0 475.2235412597656 PEAK HCD FTMS 0 0 0 2330 3258.67822265625 1 0 0 2 Unmodified _TYTSNKVH_ REV__ENSG00000039068|ENST00000261769|CDH1;REV__ENST00000562836.5_1_16:68797408-68867399:+|nuORF;REV__nc|ENSG00000039068|P12830-2|CDH1 2.302733041254933 0.38822285293237185 1 RV 2 -1 10.701 0 0 1.1283 0 0 254.12365520270993 436.1464022272094 690.2700574299193 0 0 0 0 0 0 0 0 0.4247425010840047 RV 1.1283 - 8 + NaN NaN 78697.8 NaN 1014 1316 2330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2333 23.167 NaN 23426 35 0 5408.3 0.261 + -1 YMYFHGKM 8 19 554.7331777679553 NaN 0 554.733154296875 PEAK HCD FTMS 0 0 0 2330 4516.61962890625 0.7831143443962255 -17 0.17819976806640625 3 2 Oxidation (M) _YM(Oxidation (M))YFHGKM(Oxidation (M))_ REV__ENSG00000015568|ENST00000016946|RGPD5;REV__ENSG00000169629|ENST00000302558|RGPD8;REV__ENSG00000183054|ENST00000329516|RGPD6;REV__ENST00000495473.1_1_2:110565964-110571286:+|nuORF;REV__nc|ENSG00000183054|Q99666-2|RGPD5 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86054.6 NaN 1015 1316 2330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2334 23.171 NaN 26236 35 0 9894 0.261 + -1 YRTRHAMC 8 14 527.2381484667816 NaN 0 527.2379760742188 PEAK HCD FTMS 0 0 0 2330 1714.569580078125 0.36913819255884683 -1 0.013460159301757812 4 Oxidation (M) _YRTRHAM(Oxidation (M))C_ REV__ENSG00000163060|ENST00000295201|TEKT4 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96609.7 NaN 1016 1316 2330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2336 23.176 NaN 43932 35 0 13433 0.411 + -1 TPYTCMGMM 9 22 570.1978656420946 1138.381178350989 2 570.19775390625 MULTI HCD FTMS 0 0 0 2335 10217.6953125 0.782622842544101 -3 0.04679679870605469 1 Carbamidomethyl (C),3 Oxidation (M) _TPYTC(Carbamidomethyl (C))M(Oxidation (M))GM(Oxidation (M))M(Oxidation (M))_ REV__ENST00000175756.9_1_2:131132254-131132749:+|nuORF 0.6014990680409731 0.3464572424761564 1 G 1 -1 6.9897 0 0 0.614 0 0 569.5613494207965 508.7821138971313 1078.343463317928 0 0 0 0 0 0 0 0 0 G 0.614 + + 1 + NaN NaN 94146.8 NaN 1017 1317 2335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2338 23.184 NaN 83686 35 0 17709 0.327 + 12494 KRHYSVEER 9 31 401.8778357069083 NaN 0 401.8778991699219 PEAK HCD FTMS 0 0 0 2337 24299.04296875 0.3435478522774417 534 -7.536510467529297 1 Unmodified _KRHYSVEER_ ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85162.8 NaN 1018 1318 2337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2339 23.189 NaN 48044 35 0 8898 0.261 + 26288 SRKDQLNP 8 24 479.25921886492296 956.5038847966459 2 479.2587585449219 MULTI HCD FTMS 0 0 0 2337 9996.345703125 0.13486622493074513 23 -0.2348041534423828 2 Unmodified _SRKDQLNP_ REV__ENSG00000154556|ENST00000695409|SORBS2;REV__ENST00000470685.5_1_4:186567806-186696403:-|nuORF;REV__nc|ENSG00000154556|O94875-11|SORBS2;REV__nc|ENSG00000154556|O94875-12|SORBS2;REV__nc|ENSG00000154556|O94875-2|SORBS2;REV__nc|ENSG00000154556|O94875-4|SORBS2;REV__nc|ENSG00000154556|O94875-5|SORBS2;REV__nc|ENSG00000154556|O94875-8|SORBS2;REV__nc|ENSG00000154556|O94875-9|SORBS2 4.3292370932331545 0.5355693454741696 1 {I|L}[NP] 3 -1 15.458 0 0 1.616 0 0 614.3135904624647 0 614.3135904624647 0 15.45757490560675 0 0 0 0.5 0 0 0 {I|L}[NP] 1.616 + + 5 + NaN NaN 84629.1 NaN 1019 1318 2337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2341 23.194 NaN 14395 35 0 2524.7 0.411 -1 FVNDDRHVM 9 21 574.7613515675872 1147.5081502019743 2 574.7614135742188 MULTI HCD FTMS 0 0 0 2340 8757.3212890625 0.12395882843157963 -17 0.18511390686035156 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 3.2813086475875832 0.32614229037259 1 T 1 -1 6.9897 0 0 0.60912 0 0 63.99571979492527 979.4318331354124 1043.4275529303377 0 0 0 0 0 0 0 0 0 T 0.60912 - 1 + NaN NaN 85145.6 NaN 1020 1319 2340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2343 23.202 NaN 296010 35 0 34483 0.327 + 163 AEKAYHEQL 9 61 544.7718737616939 1087.5291945901877 2 544.7713623046875 MULTI HCD FTMS 0 0 0 2342 18785.490234375 0.8522770047736589 1 -0.00994873046875 1 Unmodified _AEKAYHEQL_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3C|p.V288M|1|0.24|ENSG00000198033|chr13:19177121-19177121|C/T|missense_variant 8.155526934196011 0.2891920862272901 1 VK[DN]YE{M(Oxidation (M))|F} 7 7 29.187 0 0 2.6838 0 0 174.14670054897516 0 174.14670054897516 0 9.777069965251847 0 0 0 0 0 0.8252574989159953 0.3494850021680094 VK[DN]YE{M(Oxidation (M))|F} 2.6838 - 110 + NaN NaN 140304.6 NaN 1021 1320 2342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2344 23.207 NaN 32416 35 0 7046.1 0.261 + -1 SHNYEGLM 8 19 483.7030794744445 965.391606015689 2 483.7027282714844 MULTI HCD FTMS 0 0 0 2342 3411.536865234375 0.36681932544528933 -20 0.2112293243408203 2 Oxidation (M) _SHNYEGLM(Oxidation (M))_ REV__ENSG00000052841|ENST00000039989|TTC17;REV__nc|ENSG00000052841|Q96AE7-2|TTC17;REV__TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7599 0 0 800.3457056024063 0 800.3457056024063 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7599 + + 4 + NaN NaN 84843.2 NaN 1022 1320 2342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2346 23.212 NaN 21672 35 0 2281.8 0.411 -1 FVNDDRHVM 9 26 574.7613515675872 1147.5081502019743 2 574.7598266601562 MULTI HCD FTMS 0 0 0 2345 11685.1123046875 0.16540135774047426 -15 0.16037940979003906 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 11.494710602746466 0.2610445893512368 1 D 1 -1 7.302 0 0 0.63634 0 0 475.2046795052707 554.2528170221311 1029.4574965274019 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.63634 + + 4 + NaN NaN 92638.6 NaN 1023 1321 2345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2348 23.22 NaN 58131 35 0 7979.7 0.327 + 31069 VTATLIKNQL 10 28 550.8374049747488 1099.6602570162975 2 550.8369140625 MULTI HCD FTMS 0 0 0 2347 18398.703125 0.3769866952030536 13 -0.1339855194091797 1 Unmodified _VTATLIKNQL_ REV__CON__Q04695;REV__ENSG00000128422|ENST00000311208|KRT17;REV__ENST00000399211.7_1_17:16744211-16749072:-|nuORF;REV__ENST00000491673.1_1_17:39779200-39780782:-|nuORF;REV__ENST00000493253.5_1_17:39778327-39780527:-|nuORF 3.2813086475875832 0.45793521633868084 1 CE 2 -1 8.2011 0 0 0.74578 0 0 62.24619925287863 802.3369845025999 864.5831837554786 0 0 0 0 0 0 0 0.3252574989159953 0 CE 0.74578 - 5 + NaN NaN 82363.7 NaN 1024 1322 2347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2349 23.225 NaN 53064 35 0 11036 0.261 + 18886 NAESGRGQVM 10 29 524.7455058745364 1047.4764588158728 2 524.745849609375 MULTI HCD FTMS 0 0 0 2347 18341.3984375 0.018754640531296655 67 -0.7111988067626953 2 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 13.614867670302875 0.3837631382804675 1 VM 2 8 21.766 0 0 2.0779 0 0 799.3605213849625 0 799.3605213849625 0 9.776296993281406 0 0 0 0.3807196863200844 0 0 0 + VM 2.0779 + + 9 NaN NaN 94159 NaN 1025 1322 2347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2351 23.23 NaN 56235 35 0 8346.6 0.327 + -1 RIDEYEEM 8 27 550.7317048539504 1099.4488567747007 2 550.7315063476562 MULTI HCD FTMS 0 0 0 2350 19619.443359375 0.7182166680036944 -2 0.018024444580078125 1 Oxidation (M) _RIDEYEEM(Oxidation (M))_ REV__ENSG00000116984|ENST00000366577|MTR;REV__nc|ENSG00000116984|Q99707-2|MTR 4.3292370932331545 0.5355693454741696 1 E{M(Oxidation (M))|F} 2 -1 23.271 0 0 2.1166 0 0 805.3616810529312 0 805.3616810529312 0 12.81357210935475 0 0 0 0 0 0.3807196863200844 0 E{M(Oxidation (M))|F} 2.1166 + + 8 NaN NaN 89500.1 NaN 1026 1323 2350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2352 23.235 NaN 42979 35 0 5311.4 0.261 -1 0 25 471.2194671300388 940.4243813268777 2 471.2188720703125 MULTI HCD FTMS 0 0 0 2350 14666.193359375 0.5248668836565464 7 -0.0734100341796875 2 NaN NaN 1 A{I|L} 2 -1 25.969 0 0 2.7614 0 0 738.2953358380875 0 738.2953358380875 0 25.969100130080562 0 0 0 0.5 0 0 0 A{I|L} 2.7614 - 2 NaN NaN 93491.8 NaN 1027 1323 2350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2353 23.238 NaN 34238 35 0 9703.2 0.261 + 31180 VVFQQERD 8 24 510.75889512948646 NaN 0 510.7586975097656 PEAK HCD FTMS 0 0 0 2350 4059.7392578125 0.5405827179373148 10 -0.10075569152832031 3 Unmodified _VVFQQERD_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77313.3 NaN 1028 1323 2350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2355 23.244 NaN 118680 35 0 13505 0.327 -1 MLYIVTEF 8 40 516.2593496970985 1030.504146460997 2 516.2449951171875 MULTI HCD FTMS 0 0 0 2354 1614.1016845703125 0.055373880706222296 -15 0.16562271118164062 1 Oxidation (M) _M(Oxidation (M))LYIVTEF_ ENSG00000142178|ENST00000270162|SIK1 5.760428011301431 0.5334459684533844 1 TVET{M(Oxidation (M))|F} 5 -1 34.609 0 0 3.3585 0 0 435.2207203595719 0 435.2207203595719 0 10.880456295278407 0 0 0 0 0 0.3807196863200844 0 TVET{M(Oxidation (M))|F} 3.3585 - 23 NaN NaN 105964.4 NaN 1029 1324 2354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2356 23.248 NaN 145760 35 0 17693 0.261 + 28713 TSSAVTSVAK 10 38 475.7612635548595 949.507974176519 2 475.7609558105469 MULTI HCD FTMS 0 0 0 2354 53683.80859375 0.12606786197687414 -13 0.1422748565673828 2 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 16.565877749689598 0.3561603856738253 1 {[MG]|[TS]}SAVT 6 4 32 0 0 3.3702 0 0 0 400.21946130924067 400.21946130924067 26.057743964882718 0 0 0 0 0.7614393726401688 0 0.5 0 + {[MG]|[TS]}SAVT 3.3702 + + 31 + NaN NaN 102619.2 NaN 1030 1324 2354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2358 23.254 NaN 46448 35 0 9388.3 0.327 -1 NAAHQEALM 9 27 500.729585508408 999.444618083616 2 500.7293701171875 MULTI HCD FTMS 0 0 0 2357 23363.84765625 0.09829706153966707 72 -0.7714691162109375 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 13.90604991867851 0.24021115267848145 1 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2766320990441 0 650.2766320990441 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 32 + NaN NaN 89517 NaN 1031 1325 2357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2359 23.258 NaN 48870 35 0 5287.7 0.261 + 18887 NAESGRGQVM 10 31 524.7455058745364 1047.4764588158728 2 524.7466430664062 MULTI HCD FTMS 0 0 0 2357 19702.798828125 0.02014671404370321 70 -0.7504463195800781 2 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 10.150570793230772 0.4161670024087991 1 {[QG]|[NA]}E 3 7 24.666 0 0 2.3548 0 0 0 730.3288812614384 730.3288812614384 6.0822685886482475 0 0 0 0 0.5 1.2218487496163564 0 0 + {[QG]|[NA]}E 2.3548 + + 5 NaN NaN 97927.8 NaN 1032 1325 2357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2360 23.261 NaN 55387 35 0 8810.1 0.261 + 12116 KKKKKKKKKSF 11 28 469.32838077551366 NaN 0 469.3284912109375 PEAK HCD FTMS 0 0 0 2357 9564.15234375 0.48672235905058225 -103 1.1698589324951172 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85287.2 NaN 1033 1325 2357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2362 23.267 NaN 35558 35 0 4324.1 0.411 + 2529 DSSGLTVHR 9 40 486.24911991178834 970.4836868903767 2 486.2487487792969 MULTI HCD FTMS 0 0 0 2361 12943.96484375 0.43011396805545593 9 -0.08731460571289062 1 Unmodified _DSSGLTVHR_ ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF 11.494710602746466 0.2610445893512368 1 D{[CA]|SS}{[VA]|[{I|L}G]}TVHR 9 0 + 23.178 0 0 2.3883 2.3883 87.035 0 0 0 6.9357497244931245 2.2088590946975764 2.2088590946975764 23.17795922477814 0 0.3054621874040891 0 0 0 + + D{[CA]|SS}{[VA]|[{I|L}G]}TVHR 2.3883 + + 20 + NaN NaN 100537.4 NaN 1034 1326 2361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2365 23.283 NaN 447530 35 0 56504 0.327 + 27786 TAVKNDYEM 9 56 543.7422850276064 1085.4700171220127 2 543.7421264648438 MULTI HCD FTMS 0 0 0 2364 331111.40625 0.7306129319109195 7 -0.07152175903320312 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 121.34585337138759 0.001129813327125052 1 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 107.77 0 0 9.9289 9.9289 93.749 0 0 0 13.406206186877938 13.406206186877938 13.406206186877938 9.208187539523749 0 2.9604093769761874 1.2218487496163564 1.610924374808178 0 + + [TA]VKNDYE{M(Oxidation (M))|F};[TA]VKGGDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]NDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]GGDYE{M(Oxidation (M))|F} 9.9289;9.0806;5.1351;4.2868 +;-;-;- + 152 + NaN NaN 145676.3 NaN 1035 1328 2364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2366 23.287 NaN 34971 35 0 5809.4 0.261 + -1 HHQSFQSTM 9 26 559.7370637467975 1117.459574560395 2 559.7371215820312 MULTI HCD FTMS 0 0 0 2364 11723.19140625 0.615399079670755 6 -0.0583038330078125 2 Oxidation (M) _HHQSFQSTM(Oxidation (M))_ REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|331|3|anti-sense 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84397.1 NaN 1036 1328 2364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2367 23.29 NaN 25865 35 0 11294 0.261 + -1 AWQMCVLM 8 15 527.728971599108 1053.443390265016 2 527.7285766601562 MULTI HCD FTMS 0 0 0 2364 3574.2958984375 0.4679714947581931 1 -0.013210296630859375 3 Carbamidomethyl (C),Oxidation (M) _AWQM(Oxidation (M))C(Carbamidomethyl (C))VLM_ REV__ENSG00000221968|ENST00000278829|FADS3;REV__ENST00000533676.5_1_11:61644904-61645258:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79347.7 NaN 1037 1328 2364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2370 23.303 NaN 67373 35 0 12286 0.327 + -1 VVRALCFCW 9 33 404.1998040022491 1209.5775826069473 3 404.19970703125 MULTI HCD FTMS 0 0 0 2369 12064.6240234375 0.5960436366850447 -7 0.0734100341796875 1 2 Carbamidomethyl (C) _VVRALC(Carbamidomethyl (C))FC(Carbamidomethyl (C))W_ REV__ENST00000329073.8_1_12:132627816-132627993:-|nuORF 5.296884461304476 0.3108627248283497 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97676.6 NaN 1038 1330 2369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2371 23.308 NaN 42018 35 0 7512 0.261 + -1 MFMCCMCTL 9 20 570.1978656420946 1138.381178350989 2 570.1974487304688 MULTI HCD FTMS 0 0 0 2369 4094.828857421875 0.31364280320696053 10 -0.10549545288085938 2 Carbamidomethyl (C) _MFMC(Carbamidomethyl (C))CMCTL_ REV__ENSG00000183826|ENST00000481247|BTBD9;REV__nc|ENSG00000183826|Q96Q07-2|BTBD9;REV__nc|ENSG00000183826|Q96Q07-3|BTBD9 0 0.3510170533115441 1 {I|L} 1 -1 5.4846 0 0 0.48179 0 0 751.6245388019641 270.64167200260005 1022.2662108045643 0 0 0 0 0 0 0 0 0 {I|L} 0.48179 + + 2 + NaN NaN 83922.6 NaN 1039 1330 2369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2374 23.321 NaN 22649 35 0 3992.5 0.327 + 19091 NEYLKKLS 8 19 497.782032163042 993.549511392884 2 497.7814025878906 MULTI HCD FTMS 0 0 0 2373 2005.976806640625 0.3252215442068396 1 -0.009901046752929688 1 Unmodified _NEYLKKLS_ DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;ENSG00000141627|ENST00000675505|DYM;ENST00000577481.5_1_18:46917759-46956764:-|nuORF;ENST00000581409.5_1_18:46918007-46956764:-|nuORF;ENST00000584977.5_1_18:46917135-46956764:-|nuORF;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 82772.7 NaN 1040 1332 2373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2375 23.325 NaN 39583 35 0 9208.6 0.261 + 18901 NAEVTTNIP 9 23 479.7453274075246 NaN 0 479.74481201171875 PEAK HCD FTMS 0 0 0 2373 5775.19482421875 0.5635389291006065 9 -0.09796142578125 2 Unmodified _NAEVTTNIP_ ENSG00000171492|ENST00000337338|LRRC8D 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89870.9 NaN 1041 1332 2373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2377 23.331 NaN 72114 35 0 10395 0.327 -1 FVNDDRHVM 9 35 574.7613515675872 1147.5081502019743 2 574.76123046875 MULTI HCD FTMS 0 0 0 2376 53348.51171875 0.7551417600133056 -3 0.027345657348632812 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 28.494509381512117 0.11816142465008336 1 [{M(Oxidation (M))|F}V]NDD[RH]V{M(Oxidation (M))|F} 9 -1 [{M(Oxidation (M))|F}V] + + 32.535 3.7236 1.5129 2.8353 2.8353 59.189 0 0 0 0 25.54576644454535 0 0 0 1.6549471895720984 0 0 0 [{M(Oxidation (M))|F}V]NDD[RH]V{M(Oxidation (M))|F} 2.8353 + + 45 + NaN NaN 102724.4 NaN 1042 1333 2376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2378 23.335 NaN 59824 35 0 12094 0.263 -1 YCRLCHVQRK 10 24 454.90055510840546 NaN 0 454.9008483886719 PEAK HCD FTMS 0 0 0 2376 17550.681640625 0.2703182336910483 568 -8.434331893920898 2 Carbamidomethyl (C) _YCRLC(Carbamidomethyl (C))HVQRK_ chrX:135762356-135764276|117|44.41|0.4|6.79|-|1|CT45A3,CT45A3|1;chrX:135796903-135798825|123|64.2|0.66|6.61|-|1|CT45A6,CT45A6|1 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87085.5 NaN 1043 1333 2376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2380 23.341 NaN 84305 35 0 8921.5 0.327 + -1 VRWLVPDM 8 43 516.2722473072205 NaN 0 516.2590942382812 PEAK HCD FTMS 0 0 0 2379 1493.293701171875 0.7599944384568532 -1 0.010036468505859375 1 Oxidation (M) _VRWLVPDM(Oxidation (M))_ REV__ENST00000321453.11_1_7:32110942-32111026:-|nuORF 5.760428011301431 0.38822285293237185 1 ET 2 -1 13.271 0 0 1.2878 0 0 635.3943653646378 162.0226229303344 797.4169882949722 0 0 0 0 0 0 0 0.3807196863200844 0 ET 1.2878 - 13 + NaN NaN 92458.2 NaN 1044 1334 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2381 23.345 NaN 26001 35 0 5217.7 0.261 + 8810 HISMGYKM 8 12 483.73147206577113 NaN 0 483.731689453125 PEAK HCD FTMS 0 0 0 2379 7528.28369140625 0.6145790025658738 -1 0.010036468505859375 2 Unmodified _HISMGYKM_ ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF;TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant 2.0597508629832335 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87015.2 NaN 1045 1334 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2382 23.349 NaN 38232 35 0 11951 0.261 -1 SCLHDSMEM 9 19 563.204109708312 1124.3936664834239 2 563.2039794921875 MULTI HCD FTMS 0 0 0 2379 2106.396484375 0.13214381942842215 -8 0.0740966796875 3 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))LHDSMEM(Oxidation (M))_ CEP85L|p.K221Nfs*32|1|0.27|ENSG00000111860|chr6:118565886-118565886|T/-|frameshift_variant;ENSG00000111860|ENST00000368491|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF;nc|ENSG00000111860|Q5SZL2-2|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L 1.844237919475145 0.33703635659052655 1 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8649 0 0 830.301561424025 0 830.301561424025 0 20.969100130080562 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.8649 + + 1 NaN NaN 98382.7 NaN 1046 1334 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2384 23.354 NaN 42787 35 0 9545.6 0.327 + -1 VCVYMCVGP 9 24 550.7317048539504 1099.4488567747007 2 550.7314453125 MULTI HCD FTMS 0 0 0 2383 13549.3955078125 0.4960080424725834 10 -0.102752685546875 1 2 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))VYM(Oxidation (M))C(Carbamidomethyl (C))VGP_ REV__ENSG00000135355|ENST00000369352|GJA10;REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant 2.302733041254933 0.33356062215410776 1 E{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.6334 0 0 805.35258681465 0 805.35258681465 0 7.501225267834 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.6334 - 2 NaN NaN 91819.9 NaN 1047 1335 2383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2385 23.359 NaN 48297 35 0 7966.8 0.261 + 1872 CWCHSGLIA 9 33 495.21983593202043 NaN 0 495.2193908691406 PEAK HCD FTMS 0 0 0 2383 3619.89013671875 0.37894642197753126 20 -0.1951580047607422 2 Unmodified _CWCHSGLIA_ REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF 0.6014990680409731 0.29233206172879045 1 D 1 -1 3.9794 0 0 0.4026 0 0 575.4257425654097 294.93955408267817 870.3652966480879 0 0 0 0 0 0 0 0 0 D 0.4026 - 2 + NaN NaN 93626.1 NaN 1048 1335 2383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2387 23.364 NaN 78321 35 0 8062.3 0.411 -1 SPSPMDPHM 9 44 515.7020784907685 1029.3896040483369 2 515.7019653320312 MULTI HCD FTMS 0 0 0 2386 13336.1767578125 0.7217284240050938 1 -0.008060455322265625 1 2 Oxidation (M) _SPSPM(Oxidation (M))DPHM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 7.910154910731844 0.2910521888787154 1 ET{M(Oxidation (M))|F} 3 -1 26.242 0 0 2.5493 0 0 634.2541803196244 0 634.2541803196244 0 15.273109370204452 0 0 0 0 0 0.3054621874040891 0 ET{M(Oxidation (M))|F} 2.5493 - 30 + NaN NaN 113991.9 NaN 1049 1336 2386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2389 23.372 NaN 710360 35 0 105870 0.327 + 28714 TSSAVTSVAK 10 53 475.7612635548595 949.507974176519 2 475.7610778808594 MULTI HCD FTMS 0 0 0 2388 425832.625 1 0 0 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 91.08480475639789 0.0009191514194420671 1 TSSAVTSV[KA] 10 0 + 87.256 0 0 9.1896 9.1896 97.521 0 0 0 53.253800256993955 7.0024146511065055 7.0024146511065055 37.89835676590613 0 2.110924374808178 1.6989700043360187 0.5 0 + + TSSAVTSV[KA];{[MG]|[TS]}SAVTSV[KA];{[MG]|[TS]}SVATSV[KA] 9.1896;5.1982;3.5943 +;+;- + 199 + NaN NaN 188858.2 NaN 1050 1337 2388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2390 23.377 NaN 33124 35 0 7301 0.261 -1 NIQNHDIM 8 18 500.729585508408 999.444618083616 2 500.72943115234375 MULTI HCD FTMS 0 0 0 2388 22146.689453125 0.09317619803480325 84 -0.8961029052734375 2 Oxidation (M) _NIQNHDIM(Oxidation (M))_ ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3 7.910154910731844 0.5302565402355366 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.0233 0 0 721.314745017775 0 721.314745017775 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 3.0233 + + 4 NaN NaN 81703.3 NaN 1051 1337 2388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2391 23.38 NaN 34875 35 0 5242.3 0.261 -1 0 22 485.3587430909652 484.35146662436523 1 485.35821533203125 MULTI HCD FTMS 0 0 0 2388 3904.257568359375 0.0754389475772155 114 -1.2435169219970703 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83185.6 NaN 1052 1337 2388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2392 23.384 NaN 8949 35 0 2791.3 0.261 + -1 YCHRLLCRS 9 8 632.8045670135984 NaN 0 632.803955078125 PEAK HCD FTMS 0 0 0 2388 3883.45751953125 0.5587926546989769 -7 0.06878089904785156 4 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HRLLC(Carbamidomethyl (C))RS_ REV__ENSG00000174485|ENST00000443035|DENND4A;REV__nc|ENSG00000174485|Q7Z401-2|DENND4A;REV__nc|ENSG00000174485|Q7Z401|DENND4A 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84624.7 NaN 1053 1337 2388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2394 23.389 NaN 55104 35 0 11050 0.326 + 2593 DTSSEITTK 9 20 491.24030221580085 980.4660514984017 2 491.2400817871094 MULTI HCD FTMS 0 0 0 2393 23806.623046875 0.9783018917141244 1 -0.01012420654296875 1 Unmodified _DTSSEITTK_ ENSG00000187514|ENST00000409115|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;nc|ENSG00000187514|P06454|PTMA 2.9952420565917617 0.3283108881486655 1 {[ES]|[DT]|[{I|L}C]}S 3 6 10.458 0 0 1.0666 0 0 0 674.3375948541624 674.3375948541624 10.45757490560675 0 0 0 0 0 0 0 0 + {[ES]|[DT]|[{I|L}C]}S 1.0666 + + 1 + NaN NaN 98003.3 NaN 1054 1338 2393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2395 23.393 NaN 50217 35 0 9823.6 0.261 + 12117 KKKKKKKKKSF 11 18 469.32838077551366 NaN 0 469.3285217285156 PEAK HCD FTMS 0 0 0 2393 10941.490234375 0.5568154653960531 -90 1.0123519897460938 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88122.9 NaN 1055 1338 2393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2397 23.399 NaN 20876 35 0 5654.6 0.327 -1 RLCKSADYM 9 17 572.2677579094625 NaN 0 572.2674560546875 PEAK HCD FTMS 0 0 0 2396 1755.678466796875 0.3021751710793606 1 -0.010009765625 1 Carbamidomethyl (C) _RLC(Carbamidomethyl (C))KSADYM_ ENSG00000130477|ENST00000519716|UNC13A 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87364.7 NaN 1056 1339 2396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2398 23.403 NaN 10363 35 0 4350.9 0.261 -1 RRSRRGACSC 10 8 633.3067626953125 NaN 0 633.3067626953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _RRSRRGAC(Carbamidomethyl (C))SC(Carbamidomethyl (C))_ ENST00000344034.4_1_2:27632313-27632520:-|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89485.1 NaN 1057 1339 2396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2400 23.409 NaN 172420 35 0 23079 0.327 + 27787 TAVKNDYEM 9 39 543.7422850276064 1085.4700171220127 2 543.7421875 MULTI HCD FTMS 0 0 0 2399 135575.40625 0.29915352713804766 19 -0.1831035614013672 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 71.70789743142352 0.008535567138151097 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 89.147 0 0 8.2127 8.2127 97.366 0 0 0 83.66205699395486 16.478174818886373 16.478174818886373 89.14660705899514 0 2.610924374808178 1.154901959985743 1.2614393726401687 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 8.2127 + + 49 + NaN NaN 104750 NaN 1058 1340 2399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2401 23.413 NaN 50064 35 0 11400 0.261 + -1 ATPLFNCMM 9 28 550.7317048539504 1099.4488567747007 2 550.7323608398438 MULTI HCD FTMS 0 0 0 2399 11930.037109375 0.43672755362661286 15 -0.14026260375976562 2 Carbamidomethyl (C),Oxidation (M) _ATPLFNC(Carbamidomethyl (C))MM(Oxidation (M))_ REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;REV__ENSG00000105877|ENST00000409508|DNAH11 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103836.9 NaN 1059 1340 2399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2403 23.419 NaN 72933 35 0 14697 0.327 + 23848 RRYRFRYS 8 29 401.8887861701099 NaN 0 401.8778991699219 PEAK HCD FTMS 0 0 0 2402 1136.658447265625 0.7189788599580805 1 -0.00994873046875 1 Unmodified _RRYRFRYS_ REV__ENSG00000142408|ENST00000270458|CACNG8 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90408.2 NaN 1060 1341 2402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2404 23.423 NaN 35339 35 0 10067 0.261 -1 TRCTLLKC 8 20 497.7619409014491 993.5093288696983 2 498.26336669921875 MULTI HCD FTMS 0 0 0 2402 7747.56787109375 0.49921231080561956 -4 0.04662513732910156 2 Carbamidomethyl (C) _TRC(Carbamidomethyl (C))TLLKC_ ENST00000462030.5_1_3:148857907-148858006:+|nuORF 0.6903765706972694 0.5409681170271811 1 S 1 -1 2.2185 0 0 0.2233 0 0 686.2190589495796 217.23871790103752 903.457776850617 0 0 0 0 0 0 0 0 0 S 0.2233 - 1 + NaN NaN 88134.6 NaN 1061 1341 2402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2406 23.429 NaN 11721 35 0 2901.6 0.411 -1 MMRAVLLLCC 10 18 584.7890875492644 NaN 0 584.7886962890625 PEAK HCD FTMS 0 0 0 2405 4928.79541015625 0.5884499640138758 56 -0.6095924377441406 1 Oxidation (M) _M(Oxidation (M))MRAVLLLCC_ CON__Q2KIH2 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89000.9 NaN 1062 1342 2405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2408 23.437 NaN 36902 35 0 5247.9 0.327 + 18888 NAESGRGQVM 10 27 524.7455058745364 1047.4764588158728 2 524.7459106445312 MULTI HCD FTMS 0 0 0 2407 12246.50390625 0.01252242457463048 88 -0.9303760528564453 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.498486711656943 0.462078817294651 1 VM 2 8 17.959 0 0 1.7145 0 0 799.3621693341812 0 799.3621693341812 0 17.95880017344075 0 0 0 0 0 0 0 + VM 1.7145 + + 1 NaN NaN 81713.6 NaN 1063 1343 2407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2409 23.441 NaN 29406 35 0 11691 0.261 -1 ERQPRKMLMKW 11 13 512.2707119926378 NaN 0 512.27099609375 PEAK HCD FTMS 0 0 0 2407 3032.676025390625 0.7840912031819538 1 -0.009958267211914062 2 2 Oxidation (M) _ERQPRKM(Oxidation (M))LM(Oxidation (M))KW_ ENSG00000171793|ENST00000650070|CTPS1;nc|ENSG00000171793|P17812-2|CTPS1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104872.4 NaN 1064 1343 2407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2411 23.447 NaN 35233 35 0 7809.3 0.327 + 8061 GHVFCHDC 8 18 459.1719822091014 NaN 0 459.1722106933594 PEAK HCD FTMS 0 0 0 2410 32052.150390625 0.9713443174404673 -68 0.7164402008056641 1 Unmodified _GHVFCHDC_ ENSG00000189051|ENST00000399398|RNF222 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90400.1 NaN 1065 1344 2410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2412 23.451 NaN 81396 35 0 15879 0.261 + -1 VVRALCFCW 9 33 404.1998040022491 1209.5775826069473 3 404.1990661621094 MULTI HCD FTMS 0 0 0 2410 13732.7197265625 0.678454644877079 7 -0.06692123413085938 2 2 Carbamidomethyl (C) _VVRALC(Carbamidomethyl (C))FC(Carbamidomethyl (C))W_ REV__ENST00000329073.8_1_12:132627816-132627993:-|nuORF 5.296884461304476 0.3108627248283497 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84459.3 NaN 1066 1344 2410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2414 23.457 NaN 64239 35 0 9903.1 0.327 -1 FVNDDRHVM 9 20 574.7613515675872 1147.5081502019743 2 574.7610473632812 MULTI HCD FTMS 0 0 0 2413 43400.6875 0.6143315059531221 9 -0.0824432373046875 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 11.494710602746466 0.2610445893512368 1 D[NP]V{M(Oxidation (M))|F} 5 -1 22.218 0 0 1.9362 0 0 557.2748280255875 0 557.2748280255875 0 15.228787452803374 0 0 0 0 0 0 0 D[NP]V{M(Oxidation (M))|F} 1.9362 - 9 NaN NaN 93721.5 NaN 1067 1345 2413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2415 23.461 NaN 49664 35 0 5468.1 0.261 + 14163 LAHADEKSL 9 33 492.2613994028425 NaN 0 492.26165771484375 PEAK HCD FTMS 0 0 0 2413 13366.0361328125 0.7048370778711222 -3 0.027997970581054688 2 Unmodified _LAHADEKSL_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 3.2813086475875832 0.27934607848455584 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93466.4 NaN 1068 1345 2413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2416 23.465 NaN 38769 35 0 8344.7 0.261 + 14377 LEEQTEKS 8 21 482.23522088428757 962.4558888353752 2 482.2344055175781 MULTI HCD FTMS 0 0 0 2413 8796.421875 0.7791978744656903 -6 0.05786705017089844 3 Unmodified _LEEQTEKS_ REV__ENSG00000066455|ENST00000163416|GOLGA5;REV__GOLGA5|p.A507Qfs*15|1|0.05|ENSG00000066455|chr14:92819733-92819733|A/-|frameshift_variant;REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85857.9 NaN 1069 1345 2413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2419 23.478 NaN 34935 35 0 5193.7 0.327 -1 SCLHDSMEM 9 22 563.204109708312 1124.3936664834239 2 563.2041015625 MULTI HCD FTMS 0 0 0 2418 14510.5615234375 0.9103134362318693 5 -0.04398345947265625 1 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))LHDSMEM(Oxidation (M))_ CEP85L|p.K221Nfs*32|1|0.27|ENSG00000111860|chr6:118565886-118565886|T/-|frameshift_variant;ENSG00000111860|ENST00000368491|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF;nc|ENSG00000111860|Q5SZL2-2|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L 7.289230182591677 0.29575926068275815 1 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.2427 0 0 830.3063970095551 0 830.3063970095551 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 2.2427 + + 3 NaN NaN 87010.1 NaN 1070 1347 2418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2420 23.482 NaN 31334 35 0 7718.7 0.261 -1 MSSRRMRC 8 11 529.7361549551678 NaN 0 529.7494506835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _M(Oxidation (M))SSRRM(Oxidation (M))RC_ ENSG00000214575|ENST00000684509|CPEB1;nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8-3|CPEB1;nc|ENSG00000214575|Q9BZB8-4|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91864.3 NaN 1071 1347 2418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2422 23.488 NaN 28379 35 0 6038 0.411 + -1 VRYMPGPM 8 34 483.73147206577113 NaN 0 483.73126220703125 PEAK HCD FTMS 0 0 0 2421 6307.20458984375 0.5148949833319847 13 -0.12553024291992188 1 Oxidation (M) _VRYMPGPM(Oxidation (M))_ REV__ENSG00000141664|ENST00000269499|ZCCHC2;REV__nc|ENSG00000141664|Q9C0B9-2|ZCCHC2 5.760428011301431 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104173.9 NaN 1072 1348 2421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2424 23.496 NaN 379480 35 0 53320 0.327 + 28715 TSSAVTSVAK 10 51 475.7612635548595 949.507974176519 2 475.760986328125 MULTI HCD FTMS 0 0 0 2423 207985.453125 0.4884206632241952 12 -0.11747169494628906 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 63.227496030279354 0.029684053017782965 1 {[MG]|[TS]}SAVTSVAK 10 0 + 51.669 0 0 5.4417 5.4417 91.854 0 0 0 17.596273996463694 6.690067809585756 6.690067809585756 51.66895006820745 0 1.524227503252014 0 0.5 0 + + {[MG]|[TS]}SAVTSVAK 5.4417 + + 128 + NaN NaN 152877.4 NaN 1073 1349 2423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2425 23.5 NaN 44315 35 0 8804.2 0.261 -1 NIQNHDIM 8 18 500.729585508408 999.444618083616 2 500.72930908203125 MULTI HCD FTMS 0 0 0 2423 14093.72265625 0.059295521167884745 96 -1.04522705078125 2 Oxidation (M) _NIQNHDIM(Oxidation (M))_ ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3 4.3292370932331545 0.5355693454741696 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5984 0 0 721.3176136701187 0 721.3176136701187 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5984 + + 2 NaN NaN 83672.2 NaN 1074 1349 2423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2427 23.506 NaN 37889 35 0 4688.5 0.411 + 27715 TASIHTTAAS 10 37 480.24322769929137 958.4719024653828 2 480.242919921875 MULTI HCD FTMS 0 0 0 2426 13740.92578125 0.5578989480545691 -6 0.0588836669921875 1 Unmodified _TASIHTTAAS_ ENSG00000067445|ENST00000173898|TRO;nc|ENSG00000067445|Q12816-2|TRO 3.2813086475875832 0.45793521633868084 1 AAS 3 7 21.682 0 0 2.2622 0 0 711.356248924025 0 711.356248924025 0 21.682437647924218 0 0 0 0 0 0 0 + AAS 2.2622 + + 8 NaN NaN 92549.9 NaN 1075 1350 2426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2429 23.514 NaN 39808 35 0 6372.5 0.411 + 12118 KKKKKKKKKSF 11 30 469.32838077551366 NaN 0 469.328369140625 PEAK HCD FTMS 0 0 0 2428 11086.5703125 0.5641986307136139 -77 0.8013153076171875 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102192.7 NaN 1076 1351 2428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2432 23.529 NaN 89882 35 0 11462 0.327 + 27788 TAVKNDYEM 9 37 543.7422850276064 1085.4700171220127 2 543.7421875 MULTI HCD FTMS 0 0 0 2431 56516.296875 0.1247058741595124 32 -0.3685417175292969 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 40.23920728925047 0.06424668180817725 1 YE{M(Oxidation (M))|F} 3 6 25.177 0 0 2.3195 0 0 628.3171253888687 0 628.3171253888687 0 0.17220322351953143 0 0 0 0.5 0 0 0 + YE{M(Oxidation (M))|F} 2.3195 + + 15 NaN NaN 112039 NaN 1077 1353 2431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2433 23.534 NaN 10860 35 0 4473.8 0.261 + -1 CRRCCRRR 8 10 632.804920810024 NaN 0 632.8057861328125 PEAK HCD FTMS 0 0 0 2431 6917.5244140625 0.8213748592592077 -2 0.015596389770507812 2 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))RRC(Carbamidomethyl (C))CRRR_ REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85300 NaN 1078 1353 2431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2435 23.539 NaN 37495 35 0 5319.4 0.327 + 19349 NPDESSKPNM 10 27 559.7429479760275 1117.471343018855 2 559.7438354492188 MULTI HCD FTMS 0 0 0 2434 25574.19921875 0.5911199397449054 -5 0.043491363525390625 1 Unmodified _NPDESSKPNM_ ENSG00000171557|ENST00000336098|FGG;nc|ENSG00000171557|P02679-2|FGG 11.517880264261096 0.4033776509493788 1 N[DP]ES 5 5 24.833 0 0 2.2222 0 0 0 572.2519014947874 572.2519014947874 15.853481135844874 0 0 0 0 0.5 0 0 0 + N[DP]ES 2.2222 + + 7 + NaN NaN 79009.4 NaN 1079 1354 2434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2436 23.544 NaN 46810 35 0 9987.6 0.261 -1 0 21 485.35848314615714 NaN 0 485.3586730957031 PEAK HCD FTMS 0 0 0 2434 4970.70703125 0.6262741099962866 1 -0.009962081909179688 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89004.7 NaN 1080 1354 2434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2438 23.549 NaN 39129 35 0 5708.5 0.411 + 26328 SSASSVTVTR 10 34 497.7619409014491 993.5093288696983 2 497.7618103027344 MULTI HCD FTMS 0 0 0 2437 19782.037109375 0.7036870679163006 2 -0.021310806274414062 1 Unmodified _SSASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 27.088373467376528 0.2577365110389662 1 {[CA]|SS}ASSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 59.966 0 0 6.0358 6.0358 93.104 0 0 0 59.96584697476848 7.269987279362624 7.269987279362624 59.96584697476848 0 1.1549471895720984 0 0 0 + + {[CA]|SS}ASSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6.0358 + + 46 + NaN NaN 92710.1 NaN 1081 1355 2437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2440 23.557 NaN 27986 35 0 5225.3 0.327 -1 FKEDHYML 8 22 549.7479252209511 1097.481297508702 2 549.74755859375 MULTI HCD FTMS 0 0 0 2439 4356.76806640625 0.5299504976663593 1 -0.013248443603515625 1 Oxidation (M) _FKEDHYM(Oxidation (M))L_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91587.9 NaN 1082 1356 2439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2441 23.562 NaN 27356 35 0 4701.1 0.261 + 18889 NAESGRGQVM 10 16 524.7455058745364 1047.4764588158728 2 524.7462158203125 MULTI HCD FTMS 0 0 0 2439 18976.99609375 0.019404558562690136 101 -1.13873291015625 2 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.897010918128616 0.4493830473644964 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83082 NaN 1083 1356 2439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2442 23.565 NaN 13512 35 0 4564.4 0.261 + 23384 RKWDDRWGD 9 13 617.2911987304688 NaN 0 617.2911987304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RKWDDRWGD_ REV__ENST00000418833.2_1_1:1335129-1335381:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96475.3 NaN 1084 1356 2439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2444 23.571 NaN 31259 35 0 6301.2 0.411 + 32610 WLIEYLLC 8 26 526.7779286809637 1051.5413044287272 2 526.7774658203125 MULTI HCD FTMS 0 0 0 2443 4458.0576171875 0.1649453287318256 -110 1.2075023651123047 1 Unmodified _WLIEYLLC_ ENST00000282003.6_1_13:79188644-79188734:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102822.7 NaN 1085 1357 2443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2446 23.579 NaN 23436 35 0 4796.7 0.327 -1 FVNDDRHVM 9 16 574.7613515675872 1147.5081502019743 2 574.7611083984375 MULTI HCD FTMS 0 0 0 2445 22011.30078125 0.31156731231348456 22 -0.24545669555664062 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91308.4 NaN 1086 1358 2445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2447 23.583 NaN 63582 35 0 10777 0.261 + 27714 TASGVTVTSR 10 25 489.7643533266488 977.5141537200976 2 489.7641906738281 MULTI HCD FTMS 0 0 0 2445 9799.5009765625 0.5038389854421921 1 -0.0132598876953125 2 Unmodified _TASGVTVTSR_ ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2 4.5288652416199255 0.4513317009562028 1 RS[PG] 4 8 19.085 0 0 1.9524 0 0 562.3092494141733 0 562.3092494141733 0 19.085142482848294 0 0 0 0.28872548999643577 0 0 0 RS[PG] 1.9524 - 3 NaN NaN 96200.7 NaN 1087 1358 2445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2448 23.587 NaN 32857 35 0 9423.2 0.261 + 23514 RNFLELTE 8 23 511.2691405414085 1020.523728149617 2 511.2701416015625 MULTI HCD FTMS 0 0 0 2445 8373.990234375 0.39105961660226357 -7 0.06504440307617188 3 Unmodified _RNFLELTE_ ENSG00000033627|ENST00000343619|ATP6V0A1;ENST00000588629.1_1_17:40610935-40622311:+|nuORF;nc|ENSG00000033627|Q93050-1|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87795.3 NaN 1088 1358 2445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2450 23.592 NaN 75499 35 0 9158.2 0.326 + 17932 MIQYFKEYNEN 11 29 493.55851130979806 1477.6537045295943 3 493.5586853027344 MULTI HCD FTMS 0 0 0 2449 17950.39453125 0.16674615770533416 -11 0.10435295104980469 1 Unmodified _MIQYFKEYNEN_ REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1 1.0135738785822086 0.41447547578978133 1 [C(Carbamidomethyl (C))Q]S 3 -1 10.458 0 0 0.70771 0 0 0 1099.490785161451 1099.490785161451 10.45757490560675 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))Q]S 0.70771 - 2 + NaN NaN 98274.5 NaN 1089 1359 2449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2451 23.597 NaN 29769 35 0 5475.3 0.261 + -1 EKWMVFVL 8 27 555.2884897570398 1108.5624265808794 2 555.28857421875 MULTI HCD FTMS 0 0 0 2449 7145.48095703125 0.5466558351153693 -4 0.04284095764160156 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))EKWM(Oxidation (M))VFVL_ REV__ENST00000311895.7_1_16:14020534-14020573:+|nuORF 0.7936320650641473 0.540814922690045 1 S 1 -1 3.0989 0 0 0.27955 0 0 803.8279733111514 214.68049036197502 1018.5084636731264 0 0 0 0 0 0 0 0 0 S 0.27955 - 2 + NaN NaN 78171.6 NaN 1090 1359 2449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2452 23.6 NaN 34613 35 0 8240.2 0.261 + 34613 YPPGVGHFLA 10 18 529.2768496780857 NaN 0 529.2769775390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YPPGVGHFLA_ ENSG00000186510|ENST00000331433|CLCNKA;nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA 0 0.34018428902965525 1 T 1 10 0.9691 0 0 0.091724 0 0 546.6922358778526 405.7663973443969 952.4586332222495 0 0 0 0 0 0 0 0 0 T 0.091724 - 1 + NaN NaN 89996.8 NaN 1091 1359 2449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2455 23.613 NaN 24321 35 0 5930.5 0.411 -1 MVPAARGTET 10 36 545.7634893481403 1089.5124257630805 2 545.7637329101562 MULTI HCD FTMS 0 0 0 2454 9177.470703125 0.48047187190429796 -17 0.16640281677246094 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))VPAARGTET_ ENST00000418602.1_1_1:160175641-160175713:-|nuORF 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85369.3 NaN 1092 1361 2454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2457 23.621 NaN 151010 35 0 20785 0.326 + 28716 TSSAVTSVAK 10 45 475.7612635548595 949.507974176519 2 475.76104736328125 MULTI HCD FTMS 0 0 0 2456 62849.890625 0.14759294364775363 25 -0.2946453094482422 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 32.037481411007896 0.2145045983280644 1 {[MG]|[TS]}SAVT 6 4 34.165 0 0 3.5982 0 0 0 400.2202547662719 400.2202547662719 30.185734900656307 0 0 0 0 1.0994850021680094 0 0.5 0 + {[MG]|[TS]}SAVT 3.5982 + + 35 + NaN NaN 114843 NaN 1093 1362 2456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2458 23.626 NaN 42776 35 0 10699 0.261 -1 NIQNHDIM 8 21 500.729585508408 999.444618083616 2 500.7291564941406 MULTI HCD FTMS 0 0 0 2456 12972.6865234375 0.0545790652417658 109 -1.2777690887451172 2 Oxidation (M) _NIQNHDIM(Oxidation (M))_ ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3 7.910154910731844 0.5302565402355366 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.0233 0 0 721.3159657209 0 721.3159657209 0 24.731975075880328 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 3.0233 + + 5 NaN NaN 83803.4 NaN 1094 1362 2456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2460 23.631 NaN 31571 35 0 3978.4 0.411 + 8460 HADDTQPARL 10 37 562.2769927787551 1122.5394326243102 2 562.2752075195312 MULTI HCD FTMS 0 0 0 2459 6839.228515625 0.5598876222685835 -4 0.03911781311035156 1 Unmodified _HADDTQPARL_ ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1496634-1499487:-|nuORF;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;nc|ENSG00000103249|P51798-2|CLCN7 2.9952420565917617 0.4594494122822477 1 Y 1 10 0.088644 0 0 0.0078967 0 0 579.7553272549727 376.69651209049067 956.4518393454634 0 0 0 0 0 0 0 0 0 Y 0.0078967 - 3 + NaN NaN 85812 NaN 1095 1363 2459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2462 23.639 NaN 28842 35 0 4753.2 0.327 + 580 APEHKEPTL 9 21 511.2691405414085 1020.523728149617 2 511.2688293457031 MULTI HCD FTMS 0 0 0 2461 12593.8525390625 0.5881243000803191 -1 0.008056640625 1 Unmodified _APEHKEPTL_ ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1;TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant 2.9952420565917617 0.3283108881486655 1 A[EP]C(Carbamidomethyl (C)) 4 6 12.703 0 0 1.2448 0 0 0 560.3227022760374 560.3227022760374 12.703037561203843 0 0 0 0 0 0 0 0 A[EP]C(Carbamidomethyl (C)) 1.2448 - 2 + NaN NaN 92118.9 NaN 1096 1364 2461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2463 23.644 NaN 44486 35 0 5592.8 0.261 + 12119 KKKKKKKKKSF 11 34 469.32838077551366 NaN 0 469.3285827636719 PEAK HCD FTMS 0 0 0 2461 15848.94140625 0.8065570133609837 -64 0.6483860015869141 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87166 NaN 1097 1364 2461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2464 23.647 NaN 41215 35 0 11244 0.261 + -1 QLKLHCMA 8 29 480.24322769929137 958.4719024653828 2 480.242431640625 MULTI HCD FTMS 0 0 0 2461 13217.6640625 0.5366538611444719 8 -0.08906173706054688 3 Oxidation (M) _QLKLHCM(Oxidation (M))A_ REV__ENSG00000004478|ENST00000001008|FKBP4 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88010.6 NaN 1098 1364 2461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2466 23.653 NaN 48013 35 0 5458.1 0.327 -1 TAVKNDYEM 9 22 543.7422850276064 1085.4700171220127 2 543.741943359375 MULTI HCD FTMS 0 0 0 2465 35132.53125 0.07752158692664941 44 -0.49071693420410156 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 18.373094154950223 0.20161688160436167 1 E{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.6451 0 0 791.379686424025 0 791.379686424025 0 8.26606256887672 0 0 0 0.9247425010840047 0 0 0 E{M(Oxidation (M))|F} 2.6451 + + 9 NaN NaN 84681.1 NaN 1099 1365 2465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2467 23.657 NaN 46646 35 0 13567 0.262 + -1 GNMYILFIYRG 11 24 454.90055510840546 NaN 0 454.90069580078125 PEAK HCD FTMS 0 0 0 2465 18111.76953125 0.27896019362427993 600 -9.582731246948242 2 Oxidation (M) _GNM(Oxidation (M))YILFIYRG_ REV__ENST00000545247.6_1_11:18505395-18536277:-|nuORF 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87681.9 NaN 1100 1365 2465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2468 23.661 NaN 44650 35 0 10761 0.261 -1 RQEVDYMT 8 27 529.2343669183572 NaN 0 529.234619140625 PEAK HCD FTMS 0 0 0 2465 5160.42724609375 0.8498358314042559 1 -0.013456344604492188 3 Oxidation (M) _RQEVDYM(Oxidation (M))T_ ENSG00000170820|ENST00000406846|FSHR;FSHR|p.R308M|1|0.26|ENSG00000170820|chr2:48963898-48963898|C/A|missense_variant;nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;nc|ENSG00000170820|P23945-4|FSHR 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94806.5 NaN 1101 1365 2465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2470 23.666 NaN 311310 35 0 46894 0.327 -1 0 53 434.9050049095525 1301.6931853288575 3 434.90478515625 MULTI HCD FTMS 0 0 0 2469 105764.546875 0.35575196188511676 -7 0.07390022277832031 1 NaN NaN 1 DT[{M(Oxidation (M))|F}V]K{I|L} 6 -1 47.893 0 0 3.6793 0 0 0 595.3040865533811 595.3040865533811 47.89258754269092 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 DT[{M(Oxidation (M))|F}V]K{I|L} 3.6793 - 21 + NaN NaN 122827.3 NaN 1102 1366 2469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2471 23.671 NaN 61183 35 0 9492.9 0.261 + 19350 NPDESSKPNM 10 24 559.7429479760275 1117.471343018855 2 559.74267578125 MULTI HCD FTMS 0 0 0 2469 35553.94140625 0.821790880800984 7 -0.07577323913574219 2 Unmodified _NPDESSKPNM_ ENSG00000171557|ENST00000336098|FGG;nc|ENSG00000171557|P02679-2|FGG 14.218169984304629 0.37812005199054677 1 NPDES 5 5 42.959 0 0 3.8443 0 0 0 572.2506807916624 572.2506807916624 39.85985638199878 0 0 0 0 0.5 0 0 0 + NPDES 3.8443 + + 11 + NaN NaN 89630.8 NaN 1103 1366 2469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2473 23.676 NaN 360700 35 0 55576 0.327 -1 0 50 434.9050049095525 1301.6931853288575 3 434.9049072265625 MULTI HCD FTMS 0 0 0 2472 132502.328125 0.4456877524424626 -6 0.06289863586425781 1 NaN NaN 1 DT{I|L}C(Carbamidomethyl (C)) 4 -1 49.029 0 0 3.7665 0 0 0 809.4815767877561 809.4815767877561 22.11758134947864 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 DT{I|L}C(Carbamidomethyl (C)) 3.7665 - 31 + NaN NaN 138500.4 NaN 1104 1367 2472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2474 23.681 NaN 45048 35 0 7042.7 0.261 -1 SPSPMDPHM 9 22 515.7020784907685 1029.3896040483369 2 515.7022705078125 MULTI HCD FTMS 0 0 0 2472 6914.0068359375 0.3741728493766695 32 -0.3790302276611328 2 2 Oxidation (M) _SPSPM(Oxidation (M))DPHM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91142.5 NaN 1105 1367 2472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2475 23.684 NaN 11087 35 0 4447.8 0.261 + 28630 TRENTDSLELS 11 10 632.8045654296875 NaN 0 632.8045654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TRENTDSLELS_ ENSG00000178188|ENST00000684370|SH2B1;ENST00000569471.1_1_16:28880556-28883354:+|nuORF;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92293.1 NaN 1106 1367 2472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2478 23.697 NaN 13383 35 0 4786.1 0.327 + -1 YIWEFLMM 8 12 574.7613515675872 1147.5081502019743 2 574.7608642578125 MULTI HCD FTMS 0 0 0 2477 12528.083984375 0.17733352036942465 33 -0.3837089538574219 1 Oxidation (M) _YIWEFLM(Oxidation (M))M_ REV__ENSG00000130227|ENST00000252512|XPO7 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95137.4 NaN 1107 1369 2477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2479 23.702 NaN 38014 35 0 9337.9 0.261 -1 TREDPRQM 8 22 524.7455058745364 1047.4764588158728 2 524.74560546875 MULTI HCD FTMS 0 0 0 2477 10330.3466796875 0.010563095240605915 114 -1.3668651580810547 2 Oxidation (M) _TREDPRQM(Oxidation (M))_ ENST00000495272.5_1_1:95705378-95709907:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83838.3 NaN 1108 1369 2477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2481 23.707 NaN 31799 35 0 4637 0.411 -1 QVYEGERAM 9 34 549.747600996311 NaN 0 549.7471923828125 PEAK HCD FTMS 0 0 0 2480 8386.4921875 0.6867252142115977 -6 0.06778717041015625 1 Oxidation (M) _QVYEGERAM(Oxidation (M))_ ENSG00000109971|ENST00000534624|HSPA8;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A 5.296884461304476 0.2695788793730278 1 YE 2 -1 10.969 0 0 0.99948 0 0 227.1221097486595 575.2245577447874 802.3466674934468 0 0 0 0 0 0 0 0 0 YE 0.99948 + + 6 + NaN NaN 87896.9 NaN 1109 1370 2480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2483 23.715 NaN 286600 35 0 46053 0.327 + 19890 NYEKFYQIMEN 11 40 493.55851130979806 1477.6537045295943 3 493.5586242675781 MULTI HCD FTMS 0 0 0 2482 96294.3046875 0.8945043122920844 1 -0.013271331787109375 1 Unmodified _NYEKFYQIMEN_ tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1 1.0135738785822086 0.41447547578978133 1 NSSS 4 10 36.414 0 0 2.4643 0 0 0 1099.4944138999044 1099.4944138999044 25.956837818197798 0 0 0 0 0.5 0 0.4247425010840047 0 NSSS 2.4643 - 20 + NaN NaN 123783.4 NaN 1110 1371 2482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2484 23.72 NaN 219210 35 0 20618 0.261 + 35066 YTSENLRQ 8 50 505.74867667363594 1009.4828004140719 2 505.7484436035156 MULTI HCD FTMS 0 0 0 2482 43984.1328125 0.061198646552412334 -12 0.12296485900878906 2 Unmodified _YTSENLRQ_ REV__ENST00000370082.1_1_20:62201547-62204491:-|nuORF;REV__nc|ENSG00000130589|Q9BYK8|HELZ2 2.302733041254933 0.5385759549224092 1 AT 2 -1 8.9402 0 0 0.88562 0 0 149.10878168787912 685.2662690178535 834.3750507057325 0 0 0 0 0 0 0 0.4247425010840047 0 AT 0.88562 - 20 + NaN NaN 112164.8 NaN 1111 1371 2482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2485 23.723 NaN 27316 35 0 10593 0.261 + 2370 DPETRRMR 8 20 530.7677644512709 NaN 0 530.7674560546875 PEAK HCD FTMS 0 0 0 2482 1352.677978515625 0.2833702767946646 1 -0.013271331787109375 3 Unmodified _DPETRRMR_ ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89022 NaN 1112 1371 2482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2487 23.729 NaN 81545 35 0 13049 0.327 + 4056 ESGPSIVHR 9 35 491.25914955881217 980.5037461844244 2 491.2594299316406 MULTI HCD FTMS 0 0 0 2486 30992.96484375 0.013514233268170495 -16 0.17101478576660156 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 9.38312468134398 0.279288223203164 1 {I|L}VHR 4 5 29.553 0 0 3.014 0 0 457.17899140102435 0 457.17899140102435 0 19.095019080956064 0 0 0 0 0 0 0 + {I|L}VHR 3.014 + + 16 + NaN NaN 100144.6 NaN 1113 1372 2486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2488 23.733 NaN 29361 35 0 5796.4 0.261 + -1 EKWMVFVL 8 25 555.2884897570398 1108.5624265808794 2 555.2884521484375 MULTI HCD FTMS 0 0 0 2486 8406.1142578125 0.6430989652499061 9 -0.11249542236328125 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))EKWM(Oxidation (M))VFVL_ REV__ENST00000311895.7_1_16:14020534-14020573:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102558.2 NaN 1114 1372 2486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2489 23.736 NaN 13066 35 0 4146.5 0.261 -1 HDECTPQQTM 10 13 624.2360991484239 NaN 0 624.2357177734375 PEAK HCD FTMS 0 0 0 2486 5186.6083984375 0.486239581176144 -36 0.36411476135253906 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106997.7 NaN 1115 1372 2486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2491 23.742 NaN 57356 35 0 5119.1 0.327 + 26037 SPEESSKAL 9 33 474.23759725746544 946.4606415817309 2 474.2374572753906 MULTI HCD FTMS 0 0 0 2490 30715.0234375 0.8334202644692115 -1 0.013437271118164062 1 Unmodified _SPEESSKAL_ ENSG00000154059|ENST00000284202|IMPACT;nc|ENSG00000154059|Q9P2X3-2|IMPACT 15.248480904072842 0.22861284681709862 1 [PS]EE 4 5 14.876 0 0 1.5717 0 0 0 501.26743494205317 501.26743494205317 14.875852841589685 0 0 0 0 0.6203715150305281 0 0 0 + [PS]EE 1.5717 + + 8 + NaN NaN 102466.9 NaN 1116 1373 2490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2492 23.746 NaN 34356 35 0 11761 0.261 -1 CQARYHQK 8 22 545.7634893481403 1089.5124257630805 2 545.763671875 MULTI HCD FTMS 0 0 0 2490 9481.9443359375 0.4964121043534313 -5 0.05238533020019531 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))QARYHQK_ ENSG00000158445|ENST00000371741|KCNB1;ENSG00000182674|ENST00000523207|KCNB2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80310 NaN 1117 1373 2490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2494 23.752 NaN 31162 35 0 6128.5 0.327 -1 NAAHQEALM 9 21 500.729585508408 999.444618083616 2 500.72930908203125 MULTI HCD FTMS 0 0 0 2493 11922.919921875 0.050162456566932544 121 -1.4527320861816406 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 12.240655878213236 0.2545997876781172 1 A{I|L}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.6218 0 0 650.2768421857437 0 650.2768421857437 0 36.197887582883936 0 0 0 1 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.6218 + + 12 NaN NaN 96651.8 NaN 1118 1374 2493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2495 23.756 NaN 31202 35 0 5201.9 0.261 + 8132 GMKWKKWS 8 17 525.7804062497729 NaN 0 525.7656860351562 PEAK HCD FTMS 0 0 0 2493 1269.8604736328125 0.3731365763408092 -3 0.036846160888671875 2 Unmodified _GMKWKKWS_ ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79443.9 NaN 1119 1374 2493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2496 23.76 NaN 18528 35 0 3648 0.261 + 30781 VPRLWRARG 9 15 555.8356759067822 NaN 0 555.79052734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VPRLWRARG_ REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75063 NaN 1120 1374 2493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2497 23.763 NaN 78862 35 0 11684 0.264 -1 0 31 400.3500671386719 NaN 0 400.3500671386719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91748.5 NaN 1121 1374 2493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2499 23.769 NaN 40618 35 0 7022.1 0.327 + 12120 KKKKKKKKKSF 11 22 469.32838077551366 NaN 0 469.32830810546875 PEAK HCD FTMS 0 0 0 2498 9012.921875 0.45867008797755976 -53 0.5484161376953125 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 G 1 11 0.71334 0 0 0.076159 0 0 485.78888938130234 390.7982576959594 876.5871470772618 0 0 0 0 0 0 0 0 0 G 0.076159 - 1 + NaN NaN 86037.1 NaN 1122 1375 2498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2500 23.773 NaN 41093 35 0 8851.8 0.261 + 4143 ETITESAGR 9 20 482.24093943980444 962.4673259464089 2 482.2400817871094 MULTI HCD FTMS 0 0 0 2498 9564.4609375 0.3096392771759302 -7 0.07914352416992188 2 Unmodified _ETITESAGR_ ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 8.155526934196011 0.2891920862272901 1 TESA{[NV]|[RG]} 6 3 25.406 0 0 2.6397 0 0 343.1735770223839 0 343.1735770223839 0 25.406075122407685 0 0 0 0 0 0 0 + TESA{[NV]|[RG]} 2.6397 + + 24 + NaN NaN 79398.7 NaN 1123 1375 2498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2502 23.779 NaN 46913 35 0 6291.4 0.327 -1 TAVKNDYEM 9 25 543.7422850276064 1085.4700171220127 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2501 29259.734375 0.06456298368203214 55 -0.5886287689208984 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 15.248480904072842 0.22861284681709862 1 E{M(Oxidation (M))|F} 2 -1 20.261 0 0 1.8666 0 0 791.3833485334 0 791.3833485334 0 0.9960752895140921 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F} 1.8666 + + 9 NaN NaN 84983.8 NaN 1124 1376 2501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2503 23.783 NaN 51970 35 0 13524 0.261 + 1791 CLYFLLPSP 9 17 526.7779286809637 1051.5413044287272 2 526.778076171875 MULTI HCD FTMS 0 0 0 2501 10561.626953125 0.39077355640485495 -91 0.943115234375 2 Unmodified _CLYFLLPSP_ REV__ENSG00000132694|ENST00000368194|ARHGEF11;REV__nc|ENSG00000132694|O15085|ARHGEF11 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103796.5 NaN 1125 1376 2501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2505 23.789 NaN 16220 35 0 5578.9 0.411 -1 WYPCMLKY 8 26 588.7664794921875 NaN 0 588.7664794921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _WYPC(Carbamidomethyl (C))M(Oxidation (M))LKY_ ENSG00000184232|ENST00000328965|OAF;SLC26A11-OAF|1|fusion 0.6903765706972694 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.26362 0 0 606.2430697248061 419.2275484674438 1025.47061819225 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.26362 + + 2 + NaN NaN 97384.9 NaN 1126 1377 2504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2507 23.797 NaN 564320 35 0 112620 0.327 -1 0 69 434.9050049095525 1301.6931853288575 3 434.90496826171875 MULTI HCD FTMS 0 0 0 2506 243125.4375 0.8177820822796612 5 -0.07436943054199219 1 NaN NaN 1 DT{I|L} 3 -1 50.93 0 0 3.9126 0 0 0 969.5124318050808 969.5124318050808 12.971062485323515 0 0 0 0 0.7742275032520141 1.6989700043360187 0 0 DT{I|L} 3.9126 - 59 + NaN NaN 162968.5 NaN 1127 1378 2506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2508 23.801 NaN 73329 35 0 14794 0.261 -1 YGFLSMFEVL 10 31 407.8665674716254 1220.5778730150762 3 407.8666687011719 MULTI HCD FTMS 0 0 0 2506 30197.7890625 0.9621244055510897 -1 0.008068084716796875 2 Oxidation (M) _YGFLSM(Oxidation (M))FEVL_ ENSG00000162782|ENST00000444136|TDRD5;nc|ENSG00000162782|Q8NAT2|TDRD5;TDRD5|p.L431Ifs*20|1|0.06|ENSG00000162782|chr1:179634620-179634621|-/A|frameshift_variant;TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant 3.876331618118854 0.45478566516190344 1 {I|L} 1 -1 20.485 0 0 1.6783 0 0 1089.4833428410511 0 1089.4833428410511 0 16.989700043360187 0 0 0 0.5 0 0 0 {I|L} 1.6783 + + 2 + NaN NaN 90113.4 NaN 1128 1378 2506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2509 23.805 NaN 99574 35 0 17145 0.261 + 4121 ETGGVGDVSR 10 21 488.73874873944766 975.4629445456953 2 488.7382507324219 MULTI HCD FTMS 0 0 0 2506 22567.248046875 0.5655346182964818 -4 0.044769287109375 3 Unmodified _ETGGVGDVSR_ ENST00000376901.8_1_11:66056515-66056632:-|nuORF 2.498486711656943 0.462078817294651 1 V{[QD]|[EN]|[WG]|[KD]|[RS]} 3 7 4.437 0 0 0.45486 0 0 615.250891178311 0 615.250891178311 0 4.436974992327125 0 0 0 0 0 0 0 + V{[QD]|[EN]|[WG]|[KD]|[RS]} 0.45486 + + 6 + NaN NaN 103874.4 NaN 1129 1378 2506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2510 23.808 NaN 51175 35 0 8640.5 0.261 + 4144 ETITESAGR 9 25 482.24093943980444 962.4673259464089 2 482.2413635253906 MULTI HCD FTMS 0 0 0 2506 17957.99609375 0.5813710742646785 -4 0.044769287109375 4 Unmodified _ETITESAGR_ ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 8.155526934196011 0.2891920862272901 1 TESA{[NV]|[RG]} 6 3 25.406 0 0 2.6397 0 0 343.17473669035263 0 343.17473669035263 0 17.95880017344075 0 0 0 0 0 0 0 + TESA{[NV]|[RG]} 2.6397 + + 27 + NaN NaN 86327.1 NaN 1130 1378 2506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2511 23.811 NaN 32381 35 0 7756 0.261 -1 CQITTYYY 8 16 556.2412561928118 1110.4679594524234 2 556.2412109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))QITTYYY_ ENST00000457262.1_1_10:43062145-43062928:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86026.8 NaN 1131 1378 2506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2514 23.824 NaN 61887 35 0 6568.7 0.327 + 28160 TKATGVSVTS 10 29 475.7612635548595 949.507974176519 2 475.7611083984375 MULTI HCD FTMS 0 0 0 2513 19897.828125 0.04672687567092822 43 -0.4621009826660156 1 Unmodified _TKATGVSVTS_ REV__sp|P06790|VE2_HPV18RegulatoryproteinE2OS=Humanpapillomavirustype18OX=333761GN=E2PE=1SV=2;REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1 2.9952420565917617 0.4594494122822477 1 V 1 -1 3.0989 0 0 0.32637 0 0 458.25447784220273 389.1617525690063 847.416230411209 0 0 0 0 0 0 0 0 0 V 0.32637 + + 1 + NaN NaN 92984.3 NaN 1132 1380 2513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2515 23.829 NaN 36131 35 0 4180.5 0.261 + -1 PYECLVNL 8 27 496.74303965793126 NaN 0 496.7428283691406 PEAK HCD FTMS 0 0 0 2513 5587.9248046875 0.60226076910819 1 -0.016534805297851562 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PYECLVNL_ REV__ENST00000599226.2_1_19:43430578-43430863:-|nuORF 5.230669730166228 0.38822285293237185 1 A 1 -1 4.6041 0 0 0.46437 0 0 130.1091129078563 787.2995699518186 917.4086828596749 0 0 0 0 0 0 0 0 0 A 0.46437 - 1 + NaN NaN 79364.4 NaN 1133 1380 2513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2516 23.832 NaN 17631 35 0 5945.5 0.261 + 1792 CMFPDIYLF 9 16 574.7613515675872 1147.5081502019743 2 574.7613525390625 MULTI HCD FTMS 0 0 0 2513 1615.79296875 0.022871354924980245 44 -0.4701519012451172 3 Unmodified _CMFPDIYLF_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|166|1|anti-sense 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84232.3 NaN 1134 1380 2513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2517 23.835 NaN 30248 35 0 6555 0.261 + 4826 EYWLMWNP 8 23 569.7542540606519 1137.4939551881037 2 570.2559204101562 MULTI HCD FTMS 0 0 0 2513 2070.14013671875 0.21164642479456605 -5 0.05576515197753906 4 Unmodified _EYWLMWNP_ ENSG00000112159|ENST00000369393|MDN1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98069.4 NaN 1135 1380 2513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2519 23.841 NaN 72254 35 0 15911 0.327 + -1 ISCNQGIRA 9 28 509.75891111470963 1017.5032692962193 2 509.7582092285156 MULTI HCD FTMS 0 0 0 2518 21633.458984375 0.6008382082624393 -3 0.04415130615234375 1 Carbamidomethyl (C) _ISC(Carbamidomethyl (C))NQGIRA_ REV__ENSG00000173540|ENST00000308388|GMPPB;REV__nc|ENSG00000173540|Q9Y5P6-2|GMPPB 9.38312468134398 0.279288223203164 1 {I|L}N{I|L} 3 -1 17.447 0 0 1.7147 0 0 659.2700672471943 0 659.2700672471943 0 0.012262311882768273 0 0 0 0.6989700043360187 0 0 0 {I|L}N{I|L} 1.7147 - 7 + NaN NaN 102085.4 NaN 1136 1381 2518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2520 23.845 NaN 25002 35 0 5529.2 0.261 + 33159 YELSYTMIP 9 22 558.7675764360957 1115.5205999389914 2 558.7671508789062 MULTI HCD FTMS 0 0 0 2518 4154.654296875 0.2962688792487145 -2 0.024271011352539062 2 Unmodified _YELSYTMIP_ REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82085.8 NaN 1137 1381 2518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2521 23.849 NaN 34598 35 0 3804.1 0.261 -1 0 21 497.2174920592662 496.2102155926662 1 497.2183837890625 MULTI HCD FTMS 0 0 0 2518 1990.8363037109375 0.25747534168633246 1 -0.016771316528320312 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89786.8 NaN 1138 1381 2518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2522 23.852 NaN 31874 35 0 11702 0.261 -1 0 21 485.35848314615714 NaN 0 485.3591003417969 PEAK HCD FTMS 0 0 0 2518 2041.109130859375 0.25716538840407027 28 -0.30242919921875 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93287.7 NaN 1139 1381 2518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2524 23.858 NaN 2359500 35 0 370810 0.327 + 4057 ESGPSIVHR 9 86 491.25914955881217 980.5037461844244 2 491.25933837890625 MULTI HCD FTMS 0 0 0 2523 1478613.625 0.6447375894008663 -6 0.07893943786621094 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 118.0683919894846 0.0016252157255221692 1 ESGPS{I|L}VHR 9 0 + 109.33 0 0 11.151 11.151 99.798 0 0 0 62.774019755060166 27.068108299656274 27.068108299656274 85.78599727539753 0 1.2619229975844686 0.8538719643217619 1.024227503252014 1.0589933480769906 + + ESGPS{I|L}VHR;[RH][YN]VHR;[RH]V[YN]HR;[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}[KC]HR;[HV]R[YN]HR 11.151;2.4017;2.0152;1.4758;1.1488 +;-;-;-;- + 682 + NaN NaN 446437.6 NaN 1140 1382 2523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2525 23.862 NaN 1148100 35 0 132890 0.261 + 22383 QPQSHETAL 9 61 505.74867667363594 1009.4828004140719 2 505.7485656738281 MULTI HCD FTMS 0 0 0 2523 696403.0625 0.9689613538963078 -1 0.016771316528320312 2 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 47.748688679222035 0.03472022231463587 1 [TA]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QTA 8 7 32.215 0 0 3.1913 0 0 0 146.08419550217175 146.08419550217175 9.167884802175209 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0.7059771852360797 [TA]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QTA 3.1913 - 241 NaN NaN 270445.6 NaN 1141 1382 2523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2526 23.866 NaN 43771 35 0 10802 0.261 + -1 CCHRMHFN 8 33 532.2045476854049 1062.3945424376097 2 532.2047729492188 MULTI HCD FTMS 0 0 0 2523 13876.30078125 0.947138015627912 -5 0.06899070739746094 3 Oxidation (M) _CCHRM(Oxidation (M))HFN_ REV__ENSG00000140543|ENST00000268148|DET1;REV__nc|ENSG00000173867|Q7L5Y6-2|DET1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86388.4 NaN 1142 1382 2523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2528 23.871 NaN 71389 35 0 6453.8 0.327 + 5411 FHDENEKL 8 35 516.2444262399302 NaN 0 516.2537231445312 PEAK HCD FTMS 0 0 0 2527 2744.82958984375 0.672012848720896 4 -0.04486083984375 1 Unmodified _FHDENEKL_ REV__ENSG00000100376|ENST00000441876|FAM118A;REV__nc|ENSG00000100376|Q9NWS6-2|FAM118A 6.723162845929126 0.38822285293237185 1 K 1 -1 6.9897 0 0 0.6783 0 0 131.0820398804479 768.2812766167423 899.3633164971902 0 0 0 0 0 0 0 0 0 K 0.6783 + + 3 + NaN NaN 91109.9 NaN 1143 1383 2527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2529 23.876 NaN 28244 35 0 4291 0.261 -1 MPDNTAAQKV 10 18 545.7634893481403 1089.5124257630805 2 545.7630615234375 MULTI HCD FTMS 0 0 0 2527 13535.3916015625 0.7086238845247415 5 -0.0527801513671875 2 Oxidation (M) _M(Oxidation (M))PDNTAAQKV_ ENSG00000100345|ENST00000216181|MYH9;ENSG00000133392|ENST00000300036|MYH11;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133392|P35749-3|MYH11;nc|ENSG00000133392|P35749-4|MYH11 2.735195868890462 0.4608258780945842 1 D[EP] 3 -1 10.458 0 0 0.95984 0 0 730.3983631818375 0 730.3983631818375 0 10.45757490560675 0 0 0 0 0 0 0 D[EP] 0.95984 - 2 NaN NaN 80776.1 NaN 1144 1383 2527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2530 23.879 NaN 35773 35 0 6567.2 0.261 + -1 RSYESAPTM 9 23 529.2346093304786 1056.4546657277572 2 529.2340698242188 MULTI HCD FTMS 0 0 0 2527 5280.640625 0.8186274992176875 -3 0.0467529296875 3 Oxidation (M) _RSYESAPTM(Oxidation (M))_ REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.2082 0 0 891.4077124580291 0 891.4077124580291 0 -8.20489028679166 -8.20489028679166 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2082 + + 3 + NaN NaN 96651.3 NaN 1145 1383 2527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2532 23.885 NaN 24314 35 0 4863.5 0.327 + -1 QPQQPQQM 8 13 500.729585508408 999.444618083616 2 500.72955322265625 MULTI HCD FTMS 0 0 0 2531 12006.8837890625 0.050515711798753506 131 -1.5767536163330078 1 Oxidation (M) _QPQQPQQM(Oxidation (M))_ REV__ENSG00000144893|ENST00000687756|MED12L;REV__nc|ENSG00000144893|Q86YW9-4|MED12L;REV__nc|ENSG00000144893|Q86YW9|MED12L 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2002 0 0 834.3985803412316 0 834.3985803412316 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2002 + + 1 + NaN NaN 79196 NaN 1146 1384 2531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2533 23.889 NaN 61271 35 0 14554 0.261 + -1 RSHLMKYT 8 23 526.2720819797541 NaN 0 526.2732543945312 PEAK HCD FTMS 0 0 0 2531 13903.09375 0.8506719802714021 -8 0.10583305358886719 2 Oxidation (M) _RSHLM(Oxidation (M))KYT_ REV__tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1 2.302733041254933 0.38822285293237185 1 S 1 -1 3.9794 0 0 0.3788 0 0 302.12398466087694 658.3535250299436 960.4775096908206 0 0 0 0 0 0 0 0 0 S 0.3788 + + 1 + NaN NaN 88755.3 NaN 1147 1384 2531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2534 23.893 NaN 36330 35 0 11392 0.261 + 19142 NGEDVEEVVT 10 24 545.7495703630206 NaN 0 545.76318359375 PEAK HCD FTMS 0 0 0 2531 1921.577392578125 0.8929392643727401 -2 0.02689361572265625 3 Unmodified _NGEDVEEVVT_ tr|U7SRM3|U7SRM3_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01578PE=4SV=1 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86467.1 NaN 1148 1384 2531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2536 23.898 NaN 40161 35 0 5328.5 0.411 + 12121 KKKKKKKKKSF 11 26 469.32838077551366 NaN 0 469.3285217285156 PEAK HCD FTMS 0 0 0 2535 10532.625 0.5360082004909917 -43 0.46907806396484375 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89480.7 NaN 1149 1385 2535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2538 23.906 NaN 105320 35 0 10543 0.327 + 3940 EPVYIEGR 8 40 481.7504145397331 961.4862761462662 2 482.24053955078125 MULTI HCD FTMS 0 0 0 2537 16341.64453125 0.8378412993420477 -3 0.035022735595703125 1 Unmodified _EPVYIEGR_ REV__ENSG00000112159|ENST00000369393|MDN1 8.593279151180031 0.5292430274356741 1 [QT]{I|L}TE{[SA]|[TG]}GR 9 -1 + 34.103 0 0 3.5469 3.5469 80.192 0 0 0 19.397737521010832 16.478174818886377 16.478174818886377 1.7069622716897541 0 0 0 0 0 [QT]{I|L}TE{[SA]|[TG]}GR;[QT]A[HN]VHR;[QT]{I|L}TE{[QS]|[NT]}R;[QT]{[ES]|[DT]|[{I|L}C]}[WR]R;[QT]{[ES]|[DT]|[{I|L}C]}Q[{I|L}T]R;[QT]AT[DG][{I|L}T]R;[QT]AT{[SA]|[TG]}{NN|[MP]|[D{I|L}]|[EV]}R 3.5469;3.3693;2.8731;1.3787;1.236;0.97053;0.69675 -;-;-;-;-;-;- 65 + NaN NaN 103701.8 NaN 1150 1386 2537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2539 23.91 NaN 46745 35 0 11356 0.261 -1 TAVKNDYEM 9 25 543.7422850276064 1085.4700171220127 2 543.7421264648438 MULTI HCD FTMS 0 0 0 2537 20968.703125 0.046268432253761746 65 -0.7097263336181641 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 11.494710602746466 0.2610445893512368 1 E{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.2538 0 0 791.38383681465 0 791.38383681465 0 14.006375246153906 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.2538 + + 4 NaN NaN 91968.1 NaN 1151 1386 2537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2541 23.916 NaN 235550 35 0 35948 0.411 -1 0 56 434.9050049095525 1301.6931853288575 3 434.9049377441406 MULTI HCD FTMS 0 0 0 2540 55931.328125 0.18813184851844011 14 -0.15503501892089844 1 NaN NaN 1 DT{I|L} 3 -1 45.674 0 0 3.5088 0 0 0 969.5126026579936 969.5126026579936 38.68440000316717 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 DT{I|L} 3.5088 - 9 + NaN NaN 155486.1 NaN 1152 1387 2540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2544 23.931 NaN 66057 35 0 16467 0.411 + 3476 EGIPPQQQR 9 47 526.7779286809637 1051.5413044287272 2 526.7765502929688 MULTI HCD FTMS 0 0 0 2543 10850.53125 0.4014628337341478 -78 0.8301849365234375 1 Unmodified _EGIPPQQQR_ ENSG00000129559|ENST00000250495|NEDD8;ENST00000527046.5_1_14:24686335-24700866:-|nuORF;ENST00000560427.1_1_14:24686335-24687646:-|nuORF;ENST00000604306.1_1_14:24684951-24700866:-|nuORF 6.723162845929126 0.3000504726104499 1 [R{M(Oxidation (M))|F}]SSVT 6 9 36.119 0 0 3.4349 0 0 0 371.2065523736938 371.2065523736938 16.655462488490684 0 0 0 0 0 1.5228787452803376 0 0 [R{M(Oxidation (M))|F}]SSVT 3.4349 - 41 + NaN NaN 98920.3 NaN 1153 1389 2543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2546 23.939 NaN 50654 35 0 9908.1 0.411 -1 PNNSGDGM 8 39 404.1489932808192 NaN 0 404.1487731933594 PEAK HCD FTMS 0 0 0 2545 1856.044921875 0.2651842538660757 -5 0.04130744934082031 1 Oxidation (M) _PNNSGDGM(Oxidation (M))_ ENSG00000188177|ENST00000409871|ZC3H6 0.7936320650641473 0.38822285293237185 1 C 1 -1 1.7827 0 0 0.22111 0 0 300.0705562864446 400.19236169986567 700.2629179863103 0 0 0 0 0 0 0 0 0 C 0.22111 - 1 + NaN NaN 91440.5 NaN 1154 1390 2545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2548 23.947 NaN 59925 35 0 21539 0.327 + 24155 RYEQTRLS 8 20 526.7779286809637 1051.5413044287272 2 526.7777099609375 MULTI HCD FTMS 0 0 0 2547 18732.77734375 0.6931009830631765 -76 0.8015518188476562 1 Unmodified _RYEQTRLS_ REV__ENSG00000130881|ENST00000253193|LRP3;REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF 1.844237919475145 0.5392561982033289 1 T 1 -1 6.9897 0 0 0.66471 0 0 576.2644512873335 371.20502649478755 947.469477782121 0 0 0 0 0 0 0 0 0 T 0.66471 + + 3 + NaN NaN 91644.9 NaN 1155 1391 2547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2549 23.952 NaN 26601 35 0 3091.3 0.261 -1 MGLAMVEAI 9 18 496.74303965793126 NaN 0 496.7438659667969 PEAK HCD FTMS 0 0 0 2547 4511.77294921875 0.4862742326379555 12 -0.1411285400390625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GLAMVEAI_ ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3 2.302733041254933 0.2840881193086663 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88343.3 NaN 1156 1391 2547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2550 23.955 NaN 36839 35 0 11001 0.261 -1 QWFCGLIQA 9 25 561.7736087292515 NaN 0 561.7740478515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _QWFC(Carbamidomethyl (C))GLIQA_ ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85151.4 NaN 1157 1391 2547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2552 23.961 NaN 97703 35 0 23067 0.327 + 4122 ETGGVGDVSR 10 35 488.73874873944766 975.4629445456953 2 488.7388000488281 MULTI HCD FTMS 0 0 0 2551 17443.59375 0.4371359818722423 10 -0.12037277221679688 1 Unmodified _ETGGVGDVSR_ ENST00000376901.8_1_11:66056515-66056632:-|nuORF 4.897010918128616 0.4493830473644964 1 V{[QD]|[EN]|[WG]|[KD]|[RS]} 3 7 7.4916 0 0 0.768 0 0 615.2514710122954 0 615.2514710122954 0 7.491596866368015 0 0 0 0 0 0.3054621874040891 0 + V{[QD]|[EN]|[WG]|[KD]|[RS]} 0.768 + + 6 + NaN NaN 107688 NaN 1158 1392 2551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2553 23.965 NaN 23946 35 0 6836.9 0.261 + -1 TPVLNCQFC 9 16 569.7542540606519 1137.4939551881037 2 569.7542114257812 MULTI HCD FTMS 0 0 0 2551 12400.55078125 0.6157132173077863 9 -0.11049270629882812 2 2 Carbamidomethyl (C) _TPVLNC(Carbamidomethyl (C))QFC(Carbamidomethyl (C))_ REV__ENST00000474340.1_1_9:95003027-95004705:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88837.5 NaN 1159 1392 2551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2555 23.971 NaN 54972 35 0 8000.1 0.327 + 12588 KTQEGDRLA 9 27 509.26942055771775 1016.5242881822355 2 509.75830078125 MULTI HCD FTMS 0 0 0 2554 1723.534912109375 0.29829073082845026 4 -0.05442237854003906 1 Unmodified _KTQEGDRLA_ ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96482.5 NaN 1160 1393 2554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2556 23.975 NaN 24400 35 0 3547 0.261 + -1 VCLIDEMK 8 16 512.246084480327 NaN 0 512.2451171875 PEAK HCD FTMS 0 0 0 2554 6245.87646484375 0.6266359013921383 -9 0.08608436584472656 2 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))LIDEM(Oxidation (M))K_ REV__ENSG00000125485|ENST00000372159|DDX31;REV__nc|ENSG00000125485|Q9H8H2|DDX31 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82712.8 NaN 1161 1393 2554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2557 23.979 NaN 38496 35 0 6143.1 0.261 + -1 VCVWVCVSC 9 30 556.2412561928118 1110.4679594524234 2 556.24072265625 MULTI HCD FTMS 0 0 0 2554 6649.87744140625 0.6073944158216602 -1 0.010128021240234375 3 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VWVC(Carbamidomethyl (C))VSC_ REV__ENST00000469110.1_1_10:49633920-49634247:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96968.3 NaN 1162 1393 2554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2559 23.984 NaN 2457200 35 0 392820 0.327 + 4058 ESGPSIVHR 9 82 491.25914955881217 980.5037461844244 2 491.25946044921875 MULTI HCD FTMS 0 0 0 2558 1572206.75 0.6855481194654692 6 -0.07955169677734375 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 171.0860797660465 3.235337749433058E-09 1 ESGPS{I|L}VHR 9 0 + 117.24 0 0 11.957 11.957 99.692 0 0 0 76.37842725369894 27.48393685407258 27.48393685407258 71.64326686294442 0 1.6802658941747248 0.8239087409443188 1.3851518780601921 1.100576203518622 + + ESGPS{I|L}VHR;[PS]GES{I|L}VHR;{[ES]|[DT]|[{I|L}C]}GPS{I|L}VHR;[HN][YR]VHR;[RH][YN]VHR;[RH]V[YN]HR;[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}[KC]HR;[RH]V{[TV]|[{I|L}S]}PGSE;{[ES]|[DT]|[{I|L}C]}G[R{I|L}][YT]R;[RH]V[TP]VGSE 11.957;4.6507;4.1947;3.8858;2.3913;1.6551;1.5033;1.0627;0.8756;0.83644 +;-;+;-;-;-;-;-;-;- + 731 + NaN NaN 454040.2 NaN 1163 1394 2558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2560 23.988 NaN 773270 35 0 81011 0.261 + 22384 QPQSHETAL 9 65 505.74867667363594 1009.4828004140719 2 505.7485656738281 MULTI HCD FTMS 0 0 0 2558 396292.21875 0.5513931019201567 11 -0.12245559692382812 2 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 49.93300154707207 0.03166451819912738 1 Q{M(Oxidation (M))|F}TA{I|L} 5 5 42.3 0 0 4.1903 0 0 431.182909080275 0 431.182909080275 0 32.039106406846045 0 0 0 0.805462187404089 0 0.8494850021680094 1 Q{M(Oxidation (M))|F}TA{I|L} 4.1903 - 164 NaN NaN 200294.2 NaN 1164 1394 2558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2561 23.992 NaN 112510 35 0 14061 0.261 + 8148 GPEVTRQQT 9 35 508.26200574799367 1014.5094585627874 2 508.7809753417969 MULTI HCD FTMS 0 0 0 2558 7403.75927734375 0.5136182398524748 5 -0.07134246826171875 3 Unmodified _GPEVTRQQT_ ENSG00000024526|ENST00000456315|DEPDC1;nc|ENSG00000024526|Q5TB30-2|DEPDC1 2.0597508629832335 0.3354026079994024 1 K 1 9 6.9897 0 0 0.68897 0 0 130.05536931639875 753.3345147660426 883.3898840824413 0 0 0 0 0 0 0 0 0 K 0.68897 - 14 + NaN NaN 111031.1 NaN 1165 1394 2558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2562 23.995 NaN 73756 35 0 13557 0.262 -1 RRFCRVYF 8 29 401.8778357069083 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 2558 13336.8642578125 0.18856096833853875 610 -10.303932189941406 4 Carbamidomethyl (C) _RRFC(Carbamidomethyl (C))RVYF_ ENST00000395837.1_1_17:16284702-16284777:+|nuORF 0.45834013312273997 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112157.8 NaN 1166 1394 2558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2563 23.999 NaN 26600 35 0 11143 0.261 + -1 KTYNCMKR 8 15 558.7675764360957 1115.5205999389914 2 558.7675170898438 MULTI HCD FTMS 0 0 0 2558 8221.861328125 0.5863018838544845 11 -0.12245559692382812 5 Carbamidomethyl (C),Oxidation (M) _KTYNC(Carbamidomethyl (C))M(Oxidation (M))KR_ REV__ENSG00000152217|ENST00000649279|SETBP1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80947.1 NaN 1167 1394 2558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2565 24.004 NaN 11043 35 0 4002.3 0.326 + 20636 PFEYFIMAM 9 9 574.7613515675872 1147.5081502019743 2 574.761474609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PFEYFIMAM_ ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000148408|Q00975-2|CACNA1B 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86097.1 NaN 1168 1395 2564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2567 24.012 NaN 54994 35 0 7597.7 0.327 + 26207 SPSQDQEKL 9 27 516.2539206786204 1030.4932884240407 2 516.25390625 MULTI HCD FTMS 0 0 0 2566 43382.7109375 0.7314887338879119 11 -0.11538314819335938 1 Unmodified _SPSQDQEKL_ ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 18.373094154950223 0.20161688160436167 1 SP 2 7 25.969 0 0 2.5201 0 0 0 843.3852306141575 843.3852306141575 0 0 0 0 0 0.5 0 0 0 + SP 2.5201 + + 4 + NaN NaN 81205.5 NaN 1169 1396 2566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2568 24.016 NaN 27120 35 0 5374.3 0.261 + 22571 QSPNTAITQM 10 21 545.7634893481403 1089.5124257630805 2 545.7636108398438 MULTI HCD FTMS 0 0 0 2566 14052.94140625 0.7357193808227829 18 -0.19102859497070312 2 Unmodified _QSPNTAITQM_ ENSG00000204262|ENST00000374866|COL5A2 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 99307.8 NaN 1170 1396 2566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2569 24.02 NaN 27936 35 0 9991.4 0.261 + -1 VCLIDEMK 8 15 512.246084480327 NaN 0 512.2463989257812 PEAK HCD FTMS 0 0 0 2566 4157.58984375 0.41712241252633486 -6 0.07256317138671875 3 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))LIDEM(Oxidation (M))K_ REV__ENSG00000125485|ENST00000372159|DDX31;REV__nc|ENSG00000125485|Q9H8H2|DDX31 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83078.1 NaN 1171 1396 2566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2571 24.025 NaN 31386 35 0 4216.8 0.327 + 23940 RTSDSFDK 8 27 478.2277523582415 954.440951783283 2 478.2275695800781 MULTI HCD FTMS 0 0 0 2570 12807.0693359375 0.640798897123997 -5 0.06455039978027344 1 Unmodified _RTSDSFDK_ ENSG00000203880|ENST00000308824|PCMTD2;nc|ENSG00000203880|Q9NV79-2|PCMTD2 2.0597508629832335 0.5389364538378849 1 K 1 7 13.495 0 0 1.4139 0 0 808.3343213895315 0 808.3343213895315 0 12.385606273598313 0 0 0 0 0 0 0 + K 1.4139 + + 2 + NaN NaN 84651.2 NaN 1172 1397 2570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2572 24.03 NaN 39945 35 0 7971.3 0.261 + 12122 KKKKKKKKKSF 11 17 469.32838077551366 NaN 0 469.3285217285156 PEAK HCD FTMS 0 0 0 2570 14478.9052734375 0.7368354954908929 -31 0.35900306701660156 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94896.9 NaN 1173 1397 2570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2573 24.033 NaN 28743 35 0 9433.5 0.261 + 11735 KDFTNYFGH 9 17 564.7608400502919 NaN 0 564.7607421875 PEAK HCD FTMS 0 0 0 2570 1584.55908203125 0.22501045080135754 1 -0.013444900512695312 3 Unmodified _KDFTNYFGH_ ENSG00000074755|ENST00000381638|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF 1.844237919475145 0.28630992268396543 1 N 1 8 6.9897 0 0 0.61993 0 0 563.6445305871088 446.79184900455317 1010.436379591662 0 0 0 0 0 0 0 0 0 + N 0.61993 + + 1 + NaN NaN 82107.9 NaN 1174 1397 2570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2575 24.039 NaN 36984 35 0 4083.7 0.327 -1 TAVKNDYEM 9 19 543.7422850276064 1085.4700171220127 2 543.7418212890625 MULTI HCD FTMS 0 0 0 2574 21926.49609375 0.04838184760537228 77 -0.9168243408203125 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 7.101721422024254 0.29718071671418667 1 E{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.5158 0 0 791.3824739261697 0 791.3824739261697 0 0.2557626122369072 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.5158 + + 5 NaN NaN 81672.8 NaN 1175 1398 2574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2576 24.043 NaN 32940 35 0 6457.3 0.261 + -1 REPVDTHM 8 19 500.729585508408 999.444618083616 2 500.7292785644531 MULTI HCD FTMS 0 0 0 2574 10804.166015625 0.045455602490995214 145 -1.7824897766113281 2 Oxidation (M) _REPVDTHM(Oxidation (M))_ REV__ENSG00000132881|ENST00000375599|CPLANE2 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2002 0 0 834.3988397406457 0 834.3988397406457 0 14.54242509439325 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2002 + + 2 + NaN NaN 86588.8 NaN 1176 1398 2574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2577 24.047 NaN 50687 35 0 5052.2 0.261 + 5500 FKNFGGHR 8 30 481.7504145397331 961.4862761462662 2 481.7484130859375 MULTI HCD FTMS 0 0 0 2574 16456.375 0.5417844620102381 5 -0.04991340637207031 3 Unmodified _FKNFGGHR_ ENSG00000270647|ENST00000605844|TAF15;nc|ENSG00000270647|Q92804-2|TAF15 4.75600775471527 0.5349361699807423 1 VHR 3 6 23.188 0 0 2.4116 0 0 551.246665405835 0 551.246665405835 0 16.197887582883936 0 0 0 0 0 0 0 VHR 2.4116 - 15 + NaN NaN 87126.1 NaN 1177 1398 2574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2578 24.05 NaN 63487 35 0 9607.9 0.261 + 2342 DPAGVHPPR 9 29 473.2487753233344 944.4829977134689 2 473.24884033203125 MULTI HCD FTMS 0 0 0 2574 15139.505859375 0.6582187599590332 -23 0.2699165344238281 4 Unmodified _DPAGVHPPR_ ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 6.723162845929126 0.3000504726104499 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90663.7 NaN 1178 1398 2574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2580 24.055 NaN 22674 35 0 4010.8 0.411 + 12040 KIGECACKAC 10 27 513.2314338073157 NaN 0 513.230224609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KIGECACKAC_ REV__ENST00000421454.2_1_21:36844398-36844554:-|nuORF 1.3295316138638542 0.339046394236575 1 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.24152 0 0 423.1477298199064 451.21421228580317 874.3619421057095 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.24152 - 1 + NaN NaN 84449.3 NaN 1179 1399 2579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2583 24.071 NaN 41904 35 0 12197 0.327 -1 HIYCCTRLCH 10 21 454.8670294002839 NaN 0 454.8672790527344 PEAK HCD FTMS 0 0 0 2582 12211.353515625 0.6474023400125748 12 -0.12194252014160156 1 2 Carbamidomethyl (C) _HIYCC(Carbamidomethyl (C))TRLC(Carbamidomethyl (C))H_ ENST00000398554.1_1_17:37778113-37778526:+|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89667.6 NaN 1180 1401 2582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2584 24.075 NaN 62607 35 0 21831 0.261 + 31872 VYNAPFWGV 9 16 526.7655183283543 NaN 0 526.7777709960938 PEAK HCD FTMS 0 0 0 2582 1487.0606689453125 1 0 0 2 Unmodified _VYNAPFWGV_ REV__ENSG00000141968|ENST00000602142|VAV1;REV__nc|ENSG00000141968|P15498-2|VAV1 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103602.1 NaN 1181 1401 2582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2587 24.088 NaN 22084 35 0 4573.5 0.411 + 33266 YFKEKNFD 8 19 545.7634893481403 1089.5124257630805 2 545.7626953125 MULTI HCD FTMS 0 0 0 2586 10113.837890625 0.529493885694513 25 -0.24750709533691406 1 Unmodified _YFKEKNFD_ REV__tr|U7SSF8|U7SSF8_FUSNUDUF4299domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01430PE=4SV=1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87414.1 NaN 1182 1403 2586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2589 24.096 NaN 43569 35 0 5407.4 0.327 + 56 AAWERASGI 9 31 480.7496600271351 NaN 0 480.74078369140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _AAWERASGI_ ENST00000566559.5_3_16:67572255-67572402:+|nuORF 2.9952420565917617 0.2807323172627736 1 EE 2 8 9.464 0 0 0.98636 0 0 199.11386975954525 499.2624035611723 698.3762733207175 0 0 0 0 0 0 0 0 0 EE 0.98636 - 3 + NaN NaN 84101 NaN 1183 1404 2588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2590 24.101 NaN 20824 35 0 5715.6 0.261 + 29783 VEEYLLFIL 9 16 569.824619923866 NaN 0 569.7533569335938 PEAK HCD FTMS 0 0 0 2588 1815.46630859375 0.41519926985364575 -11 0.1257762908935547 2 Unmodified _VEEYLLFIL_ nc|ENSG00000115339|Q14435-2|GALNT3 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95279.6 NaN 1184 1404 2588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2592 24.106 NaN 873840 35 0 132460 0.327 + 4059 ESGPSIVHR 9 74 491.25914955881217 980.5037461844244 2 491.2591552734375 MULTI HCD FTMS 0 0 0 2591 504246.59375 0.2198726752013887 17 -0.17016220092773438 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 118.0683919894846 0.0016252157255221692 1 ESGPS{I|L}VHR 9 0 + 105.58 0 0 10.768 10.768 99.712 0 0 0 66.60188206377578 22.68188996919166 22.68188996919166 86.05447449538077 0 1.2031198197908841 1.3010299956639813 0.6989700043360187 0.6203715150305281 + + ESGPS{I|L}VHR;[RH][YN]VHR 10.768;1.9913 +;- + 391 + NaN NaN 216024.2 NaN 1185 1405 2591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2593 24.111 NaN 346950 35 0 33395 0.261 + 22385 QPQSHETAL 9 50 505.74867667363594 1009.4828004140719 2 505.7485656738281 MULTI HCD FTMS 0 0 0 2591 175302.96875 0.24391305996309018 22 -0.21958351135253906 2 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 41.8396318013385 0.056899836730939755 1 ATE 3 8 15.49 0 0 1.5344 0 0 149.10786932830314 556.2285860650999 705.336455393403 0 0 0 0 0 0 0 0.3807196863200844 0 ATE 1.5344 - 78 + NaN NaN 140930.1 NaN 1186 1405 2591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2594 24.114 NaN 38937 35 0 11029 0.261 + 9639 HTVNVSQVAR 10 29 555.8043328245892 1109.5941127159783 2 555.8040161132812 MULTI HCD FTMS 0 0 0 2591 7659.0849609375 0.5162353517312331 -6 0.051113128662109375 3 Unmodified _HTVNVSQVAR_ REV__ENSG00000100359|ENST00000248929|SGSM3;REV__ENST00000470518.5_1_22:40803281-40805023:+|nuORF;REV__nc|ENSG00000100359|Q96HU1-2|SGSM3 4.5288652416199255 0.4513317009562028 1 V[YG] 3 -1 10.458 0 0 0.94247 0 0 772.4194813459 0 772.4194813459 0 0.5360498482393439 0 0 0 0 0 0 0 V[YG] 0.94247 - 2 NaN NaN 84225.4 NaN 1187 1405 2591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2596 24.12 NaN 73798 35 0 11581 0.327 + 28290 TLRTQYMKY 9 29 401.8778357069083 NaN 0 401.87786865234375 PEAK HCD FTMS 0 0 0 2595 16854.8671875 0.23829964950199947 622 -10.749711990356445 1 Unmodified _TLRTQYMKY_ ARID3C|p.P319Qfs*7|1|0.37|ENSG00000205143|chr9:34622439-34622439|G/-|frameshift_variant;ENSG00000116017|ENST00000263620|ARID3A;ENSG00000179361|ENST00000346246|ARID3B;ENSG00000205143|ENST00000378909|ARID3C;nc|ENSG00000179361|Q8IVW6-3|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89151.4 NaN 1188 1406 2595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2598 24.127 NaN 84979 35 0 12525 0.411 + -1 TPSPRMAKL 9 41 508.7810032591905 1015.5474535851811 2 508.781005859375 MULTI HCD FTMS 0 0 0 2597 25886.2265625 0.5373234459182629 8 -0.08373832702636719 1 Oxidation (M) _TPSPRM(Oxidation (M))AKL_ REV__ENSG00000133488|ENST00000255858|SEC14L4;REV__ENST00000320982.3_1_22:30886096-30887579:-|nuORF;REV__ENST00000321205.9_1_22:30886096-30899699:-|nuORF 9.38312468134398 0.279288223203164 1 K{I|L} 2 -1 25.217 0 0 2.483 0 0 756.3588147289569 0 756.3588147289569 0 15.752574989159953 0 0 0 0.4247425010840047 0 0 0 K{I|L} 2.483 + + 7 NaN NaN 105064.7 NaN 1189 1407 2597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2600 24.135 NaN 27951 35 0 4792.4 0.411 + 2729 DVSQTTVSR 9 29 496.75401552334625 991.4934781134925 2 496.75384521484375 MULTI HCD FTMS 0 0 0 2599 10058.171875 0.5346291210473938 -7 0.06422996520996094 1 Unmodified _DVSQTTVSR_ ENSG00000197892|ENST00000524189|KIF13B 19.361941925380144 0.1930734562688509 1 [DV]{[QS]|[NT]}T{[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 33.675 0 0 3.3964 3.3964 88.323 0 0 0 21.980071641894206 1.712046717774534 1.712046717774534 33.67477160170119 0 0.805462187404089 2 0.4247425010840047 0 + + [DV]{[QS]|[NT]}T{[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]} 3.3964 + + 13 + NaN NaN 103987.2 NaN 1190 1408 2599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2602 24.143 NaN 66834 35 0 12059 0.411 + 2343 DPAGVHPPR 9 35 473.2487753233344 944.4829977134689 2 473.2486877441406 MULTI HCD FTMS 0 0 0 2601 16395.244140625 0.7128143657862623 -12 0.11825752258300781 1 Unmodified _DPAGVHPPR_ ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 13.90604991867851 0.24021115267848145 1 D[PA]RH 5 5 24.844 0 0 2.6304 0 0 0 365.1939791315063 365.1939791315063 22.625305739907805 0 0 0 0 0.7396518287104438 0 0 0 D[PA]RH 2.6304 - 9 + NaN NaN 104920.7 NaN 1191 1409 2601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2604 24.151 NaN 43401 35 0 7240.6 0.327 + 12123 KKKKKKKKKSF 11 19 469.32838077551366 NaN 0 469.32867431640625 PEAK HCD FTMS 0 0 0 2603 15449.611328125 0.7862349951957393 -18 0.19082069396972656 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108960.9 NaN 1192 1410 2603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2605 24.156 NaN 20227 35 0 5571.1 0.261 + 22437 QQEKWMLE 8 11 546.2647176211641 NaN 0 546.2649536132812 PEAK HCD FTMS 0 0 0 2603 1817.6300048828125 0.26977527340744983 4 -0.0515594482421875 2 Unmodified _QQEKWMLE_ ENSG00000068400|ENST00000376423|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82370 NaN 1193 1410 2603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2606 24.159 NaN 28607 35 0 5994.8 0.261 + -1 VCLIDEMK 8 19 512.246084480327 NaN 0 512.2469482421875 PEAK HCD FTMS 0 0 0 2603 6568.65966796875 0.659020074307338 7 -0.075714111328125 3 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))LIDEM(Oxidation (M))K_ REV__ENSG00000125485|ENST00000372159|DDX31;REV__nc|ENSG00000125485|Q9H8H2|DDX31 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91850.4 NaN 1194 1410 2603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2607 24.163 NaN 12787 35 0 2628 0.261 + 21478 PYERDPWW 8 12 574.7613515675872 1147.5081502019743 2 574.7609252929688 MULTI HCD FTMS 0 0 0 2603 4746.9619140625 0.067192674341118 72 -0.8992500305175781 4 Unmodified _PYERDPWW_ ENST00000563829.5_1_15:75145696-75145942:-|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81301.8 NaN 1195 1410 2603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2609 24.168 NaN 34142 35 0 4577.6 0.327 -1 TAVKNDYEM 9 14 543.7422850276064 1085.4700171220127 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2608 19285.33203125 0.04255399455368998 90 -1.111703872680664 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 7.608950283845883 0.29333554423920943 1 E{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.6545 0 0 791.3816809628336 0 791.3816809628336 0 7.501225267834 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.6545 + + 2 NaN NaN 100434.1 NaN 1196 1411 2608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2610 24.173 NaN 39916 35 0 7382.9 0.262 + 25748 SLAAKTGQH 9 22 456.7485380892321 911.4825232452642 2 456.74847412109375 MULTI HCD FTMS 0 0 0 2608 13726.716796875 0.6764909151217506 6 -0.05910682678222656 2 Unmodified _SLAAKTGQH_ REV__ENSG00000147647|ENST00000351513|DPYS 3.2813086475875832 0.32614229037259 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.60172 0 0 473.56649038569236 287.8262117975219 761.3927021832143 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60172 - 1 + NaN NaN 82677 NaN 1197 1411 2608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2611 24.176 NaN 30040 35 0 4732.4 0.261 + 28097 THVTRQSPKG 10 26 555.8043328245892 1109.5941127159783 2 555.803955078125 MULTI HCD FTMS 0 0 0 2608 14836.4208984375 1 0 0 3 Unmodified _THVTRQSPKG_ REV__DAB2|p.N396Kfs*31|1|0.08|ENSG00000153071|chr5:39382771-39382772|-/T|frameshift_variant 2.735195868890462 0.4608258780945842 1 V[YG] 3 -1 14.705 0 0 1.3253 0 0 772.425584861525 0 772.425584861525 0 14.704999916446797 0 0 0 0.4247425010840047 0 0 0 V[YG] 1.3253 - 2 NaN NaN 81256.4 NaN 1198 1411 2608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2612 24.179 NaN 34906 35 0 7377.6 0.261 -1 LMPFGCFW 8 21 529.2342609744834 NaN 0 529.2348022460938 PEAK HCD FTMS 0 0 0 2608 1840.2930908203125 0.23512182019706107 -1 0.016607284545898438 4 Carbamidomethyl (C) _LMPFGC(Carbamidomethyl (C))FW_ ENST00000581912.1_3_18:72166628-72166823:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82818.2 NaN 1199 1411 2608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2614 24.185 NaN 13499 35 0 1526.3 0.412 + -1 RCELEMEPC 9 26 591.732956675028 1181.451360416856 2 591.7329711914062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))ELEM(Oxidation (M))EPC_ REV__ENST00000309993.2_1_3:135914278-135914395:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87183.1 NaN 1200 1412 2613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2616 24.193 NaN 219330 35 0 25150 0.327 -1 RYMPPAHRNF 10 44 435.54865661797754 1303.6241404541327 3 435.5483703613281 MULTI HCD FTMS 0 0 0 2615 70178.3515625 0.6379682041048492 -8 0.08656883239746094 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 5.40270961882225 0.4467063037482923 1 PA 2 -1 10.969 0 0 0.84143 0 0 563.2505575457327 569.2589133982563 1132.509470943989 0 0 0 0 0 0 0 0 0 PA 0.84143 + + 9 + NaN NaN 112493.5 NaN 1201 1413 2615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2617 24.197 NaN 49712 35 0 9437.7 0.261 + 25136 SAHTQIQAI 9 29 484.7616726162944 967.5087922993888 2 484.7613220214844 MULTI HCD FTMS 0 0 0 2615 12658.9736328125 0.18978086256286308 -15 0.15443992614746094 2 Unmodified _SAHTQIQAI_ REV__CON__Q7RTS7;REV__ENSG00000170484|ENST00000305620|KRT74 5.731851221503515 0.3075653528928475 1 {[SA]|[TG]}H 3 -1 10.458 0 0 1.0809 0 0 0 669.3581637018186 669.3581637018186 10.45757490560675 0 0 0 0 0 0 0 0 {[SA]|[TG]}H 1.0809 + + 3 + NaN NaN 96242.8 NaN 1202 1413 2615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2619 24.203 NaN 59304 35 0 23903 0.411 + 1953 DAIKQNVQH 9 27 526.7779286809637 1051.5413044287272 2 526.7776489257812 MULTI HCD FTMS 0 0 0 2618 17247.93359375 0.6381626979421196 -53 0.5895557403564453 1 Unmodified _DAIKQNVQH_ REV__ENSG00000184949|ENST00000535113|FAM227A 3.944395688203298 0.32111559684428237 1 {[DA]|[EG]}{I|L} 3 -1 15.458 0 0 1.47 0 0 0 749.3694043645272 749.3694043645272 15.45757490560675 0 0 0 0 0.5 0 0 0 {[DA]|[EG]}{I|L} 1.47 + + 3 NaN NaN 106914.3 NaN 1203 1414 2618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2621 24.211 NaN 22234 35 0 3837.3 0.411 + 29678 VATLLGLILL 10 29 513.353759765625 NaN 0 513.353759765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VATLLGLILL_ REV__ENSG00000162366|ENST00000294338|PDZK1IP1 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88265.8 NaN 1204 1415 2620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2623 24.219 NaN 48743 35 0 5089.3 0.411 + 2995 EAAGWSARL 9 38 480.749574389602 NaN 0 480.7406311035156 PEAK HCD FTMS 0 0 0 2622 2065.80126953125 0.9400377147283191 2 -0.021329879760742188 1 Unmodified _EAAGWSARL_ ENST00000510509.1_1_5:41870266-41870568:+|nuORF 6.2057823575117 0.2651744870083793 1 EEGS 4 6 12.907 0 0 1.3452 0 0 199.11169758439138 355.2099703424438 554.3216679268352 0 0 0 0 0 0 0 0 0 EEGS 1.3452 - 13 + NaN NaN 94358.8 NaN 1205 1416 2622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2625 24.227 NaN 461280 35 0 64771 0.326 + 4060 ESGPSIVHR 9 54 491.25914955881217 980.5037461844244 2 491.2591247558594 MULTI HCD FTMS 0 0 0 2624 214748.3125 0.09363927600028299 29 -0.3239707946777344 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 61.60191391372663 0.015340508911304802 1 ESGPS{I|L}VHR 9 0 + 80.385 0 0 8.1984 8.1984 97.26 0 0 0 57.47810928665125 21.478174818886373 21.478174818886373 80.38540967689293 0 0.9802046884880937 0 0 0.5 + + ESGPS{I|L}VHR 8.1984 + + 85 + NaN NaN 147183.2 NaN 1206 1417 2624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2626 24.231 NaN 29834 35 0 6956.5 0.261 -1 LMEQRLFW 8 20 569.7885617358208 1137.5625705384416 2 569.7872924804688 MULTI HCD FTMS 0 0 0 2624 3537.5341796875 0.3190281958171637 -7 0.075714111328125 2 Oxidation (M) _LM(Oxidation (M))EQRLFW_ ENSG00000143543|ENST00000271843|JTB;JTB|p.V114Cfs*5|1|0.36|ENSG00000143543|chr1:153974780-153974780|C/-|frameshift_variant;nc|ENSG00000143543|O76095-2|JTB 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86299.1 NaN 1207 1417 2624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2627 24.235 NaN 35500 35 0 11323 0.261 + -1 TIKAEMCL 8 26 512.246084480327 NaN 0 512.2456665039062 PEAK HCD FTMS 0 0 0 2624 5807.3427734375 0.5826387207639345 13 -0.1303691864013672 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))TIKAEM(Oxidation (M))C(Carbamidomethyl (C))L_ REV__ENST00000370570.5_2_6:70408939-70408981:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89554.2 NaN 1208 1417 2624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2629 24.24 NaN 219130 35 0 19173 0.327 + 22386 QPQSHETAL 9 45 505.74867667363594 1009.4828004140719 2 505.7485046386719 MULTI HCD FTMS 0 0 0 2628 62135.78125 0.08645448873999576 35 -0.4022979736328125 1 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 4.3292370932331545 0.3181982124262546 1 ATE 3 8 13.984 0 0 1.3853 0 0 149.10973785578943 556.2273653619749 705.3371032177643 0 0 0 0 0 0 0 0.3807196863200844 0 ATE 1.3853 - 26 + NaN NaN 107953.1 NaN 1209 1418 2628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2630 24.245 NaN 29622 35 0 9434.3 0.261 + 2537 DSSSYSVPSEG 11 13 557.7318115234375 NaN 0 557.7318115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DSSSYSVPSEG_ ENSG00000136141|ENST00000389797|LRCH1 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83346.2 NaN 1210 1418 2628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2632 24.25 NaN 140910 35 0 20443 0.411 -1 MPVRAADKL 9 57 508.7812728556036 1015.5479927780073 2 508.7811279296875 MULTI HCD FTMS 0 0 0 2631 64234.76953125 0.9036929401703333 -1 0.010120391845703125 1 Oxidation (M) _M(Oxidation (M))PVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 17.11289562659939 0.2125047172822487 1 DK{I|L} 3 -1 31.198 0 0 3.072 0 0 641.3316489538248 0 641.3316489538248 0 22.614393726401687 0 0 0 0.5 0 0 0 DK{I|L} 3.072 + + 30 NaN NaN 122119.5 NaN 1211 1419 2631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2634 24.258 NaN 145700 35 0 16882 0.327 -1 CNWVRRWQR 9 43 454.2317400694211 1359.6733908084634 3 454.23175048828125 MULTI HCD FTMS 0 0 0 2633 80344.734375 0.5950174667077226 -6 0.055599212646484375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))NWVRRWQR_ NPIPB6|p.M235Rfs*23|1|0.15|ENSG00000198156|chr16:28343181-28343181|A/-|frameshift_variant 2.735195868890462 0.3302822318919627 1 QNAV{[{M(Oxidation (M))|F}H]|[RQ]} 6 -1 48.148 0 0 3.5412 0 0 645.2966057565296 0 645.2966057565296 0 43.54425638516595 0 0 0 1.5 0 0 0.7742275032520141 QNAV{[{M(Oxidation (M))|F}H]|[RQ]} 3.5412 - 36 + NaN NaN 103953.9 NaN 1212 1420 2633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2635 24.263 NaN 32750 35 0 10357 0.261 + 28053 TGKLRDLNHG 10 22 555.8043328245892 1109.5941127159783 2 555.8031616210938 MULTI HCD FTMS 0 0 0 2633 5566.45556640625 0.37518857172571063 9 -0.09069442749023438 2 Unmodified _TGKLRDLNHG_ REV__ENST00000573651.5_3_17:7227525-7227791:-|nuORF 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87411.2 NaN 1213 1420 2633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2637 24.268 NaN 46396 35 0 4477.5 0.411 + 21274 PRPPTPNAAA 10 39 496.2693209881996 990.5240890431992 2 496.2691345214844 MULTI HCD FTMS 0 0 0 2636 7534.486328125 0.5443877005985269 -2 0.01801300048828125 1 Unmodified _PRPPTPNAAA_ REV__ENST00000446533.7_2_15:41248228-41248366:+|nuORF 6.2057823575117 0.44245551207394906 1 G 1 -1 0.48455 0 0 0.048919 0 0 512.789116974643 417.6855867975219 930.474703772165 0 0 0 0 0 0 0 0 0 G 0.048919 - 8 + NaN NaN 91194.2 NaN 1214 1421 2636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2639 24.276 NaN 42982 35 0 7482.5 0.327 + 12124 KKKKKKKKKSF 11 17 469.32838077551366 NaN 0 469.3284606933594 PEAK HCD FTMS 0 0 0 2638 14085.818359375 0.7168311936721917 -6 0.057559967041015625 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84008.8 NaN 1215 1422 2638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2640 24.281 NaN 78464 35 0 12017 0.261 + 20486 PCPSAQFQVVK 11 28 401.8778357069083 NaN 0 401.8777770996094 PEAK HCD FTMS 0 0 0 2638 17070.154296875 0.2413434493810284 638 -11.501850128173828 2 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102671.6 NaN 1216 1422 2638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2642 24.286 NaN 46378 35 0 5295.7 0.411 -1 TAVKNDYEM 9 39 543.7422850276064 1085.4700171220127 2 543.7415771484375 MULTI HCD FTMS 0 0 0 2641 18872.90234375 0.041643948999523936 102 -1.298116683959961 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 34.93206674587334 0.08860942999206235 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 -1 + 50.736 0 0 4.6741 4.6741 90.532 0 0 0 42.63682493045401 12.98332479720628 12.98332479720628 50.73576872189598 0 1.1549471895720984 0 0.7302046884880937 0 [TA]VK[DN]YE{M(Oxidation (M))|F} 4.6741 + + 30 + NaN NaN 109444 NaN 1217 1423 2641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2644 24.294 NaN 36276 35 0 4507.1 0.411 + 21751 QAEQEDRAL 9 38 530.2567575688801 1058.49896220456 2 530.25634765625 MULTI HCD FTMS 0 0 0 2643 12677.4716796875 0.20229597758323384 -12 0.10979461669921875 1 Unmodified _QAEQEDRAL_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 7.608950283845883 0.29333554423920943 1 [QA]EQED 6 3 28.416 0 0 2.6846 0 0 0 355.2117098443969 355.2117098443969 20.457574905606748 0 0 0 0 0 0 0 0 + [QA]EQED 2.6846 + + 19 + NaN NaN 106687.8 NaN 1218 1424 2643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2646 24.303 NaN 25621 35 0 4415.2 0.327 + -1 LEMQRLFW 8 17 569.7885617358208 1137.5625705384416 2 569.7891235351562 MULTI HCD FTMS 0 0 0 2645 9129.2900390625 0.8233138627966553 1 -0.0132598876953125 1 Oxidation (M) _LEM(Oxidation (M))QRLFW_ REV__ENSG00000167103|ENST00000388747|PIP5KL1;REV__ENST00000464759.5_1_9:130684128-130689655:-|nuORF;REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86913.6 NaN 1219 1425 2645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2647 24.307 NaN 13677 35 0 5936 0.261 -1 FEEWHLKC 8 11 574.7613983115059 NaN 0 574.7616577148438 PEAK HCD FTMS 0 0 0 2645 7189.6572265625 1 0 0 2 Carbamidomethyl (C) _FEEWHLKC(Carbamidomethyl (C))_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84746.1 NaN 1220 1425 2645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2648 24.31 NaN 45774 35 0 11786 0.261 + 9660 HVEYEWRL 8 21 566.2807116154199 NaN 0 566.280517578125 PEAK HCD FTMS 0 0 0 2645 4692.2353515625 0.6381110204638875 2 -0.02339935302734375 3 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.38822285293237185 1 P 1 8 3.0989 0 0 0.27411 0 0 739.2148218130679 291.2562655084594 1030.4710873215274 0 0 0 0 0 0 0 0 0 P 0.27411 - 1 + NaN NaN 80008 NaN 1221 1425 2645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2650 24.316 NaN 158160 35 0 19756 0.327 + 5493 FKETWLFYNG 10 39 435.54865661797754 1303.6241404541327 3 435.8829345703125 MULTI HCD FTMS 0 0 0 2649 74869.3203125 0.9370844391406761 4 -0.04159355163574219 1 Unmodified _FKETWLFYNG_ REV__ENSG00000100351|ENST00000344138|GRAP2 6.1918466704503565 0.44252927588099017 1 PPA 3 -1 21.198 0 0 1.6261 0 0 466.2025825981561 569.2602139074711 1035.4627965056272 0 0 0 0 0 0.5 0 0 0 PPA 1.6261 - 16 + NaN NaN 115729.2 NaN 1222 1426 2649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2651 24.32 NaN 89559 35 0 14861 0.261 + 4150 ETNTGEVYR 9 26 534.7515647410729 1067.4885765489457 2 534.751708984375 MULTI HCD FTMS 0 0 0 2649 26788.77734375 0.7572943081516125 -4 0.03928184509277344 2 Unmodified _ETNTGEVYR_ ENSG00000100028|ENST00000215829|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF;nc|ENSG00000286070|P62318-2|SNRPD3 5.731851221503515 0.3075653528928475 1 WV[YR] 4 6 16.198 0 0 1.5174 0 0 445.18108472482714 0 445.18108472482714 0 -3.552713678800501E-15 -3.552713678800501E-15 0 0 0 0 0 0 WV[YR] 1.5174 - 19 + NaN NaN 89337.4 NaN 1223 1426 2649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2653 24.326 NaN 92841 35 0 16261 0.327 + 25133 SAHNKDIAL 9 28 484.7616726162944 967.5087922993888 2 484.7616271972656 MULTI HCD FTMS 0 0 0 2652 63053.3125 0.9452829574333468 -1 0.01013946533203125 1 Unmodified _SAHNKDIAL_ ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888-3|TP53BP1;nc|ENSG00000067369|Q12888|TP53BP1 15.248480904072842 0.22861284681709862 1 A{I|L} 2 7 23.271 0 0 2.4053 0 0 765.3769426352727 0 765.3769426352727 0 12.81357210935475 0 0 0 0.3807196863200844 0 0 0 + A{I|L} 2.4053 + + 4 NaN NaN 99762.9 NaN 1224 1427 2652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2654 24.33 NaN 71740 35 0 26930 0.261 + -1 RRCIVFVC 8 21 526.7779286809637 1051.5413044287272 2 526.7776489257812 MULTI HCD FTMS 0 0 0 2652 15148.634765625 0.5604899612829041 -40 0.4099922180175781 2 Carbamidomethyl (C) _RRCIVFVC(Carbamidomethyl (C))_ REV__ENSG00000185291|ENST00000331035|IL3RA;REV__nc|ENSG00000292332|P26951-2|IL3RA 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92718.9 NaN 1225 1427 2652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2656 24.336 NaN 71902 35 0 7614.8 0.327 + -1 SMDPYRNR 8 30 527.7391676203698 NaN 0 527.7565307617188 PEAK HCD FTMS 0 0 0 2655 1646.0577392578125 0.4551005942546073 -3 0.03336524963378906 1 Oxidation (M) _SM(Oxidation (M))DPYRNR_ REV__ENSG00000069011|ENST00000265340|PITX1;REV__ENSG00000107859|ENST00000370002|PITX3;REV__ENSG00000164093|ENST00000644743|PITX2;REV__nc|ENSG00000164093|Q99697-3|PITX2;REV__nc|ENSG00000164093|Q99697|PITX2 4.75600775471527 0.38822285293237185 1 PVH 3 -1 10.177 0 0 0.96608 0 0 137.02368700383767 580.2465304010374 717.270217404875 0 0 0 0 0 0 0 0 0 PVH 0.96608 - 10 + NaN NaN 114700.7 NaN 1226 1428 2655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2657 24.34 NaN 17423 35 0 5404.3 0.261 + 8876 HNMWRMYK 8 18 583.2725284521786 NaN 0 583.2725830078125 PEAK HCD FTMS 0 0 0 2655 1665.086669921875 0.31854398920007954 1 -0.013257980346679688 2 Unmodified _HNMWRMYK_ REV__ENSG00000127603|ENST00000564288|MACF1;REV__ENSG00000151914|ENST00000680361|DST;REV__ENST00000497964.1_1_1:39924789-39929409:+|nuORF;REV__nc|ENSG00000127603|O94854|MACF1;REV__nc|ENSG00000127603|Q9UPN3-2|MACF1;REV__nc|ENSG00000127603|Q9UPN3-3|MACF1;REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000151914|Q03001-14|DST;REV__nc|ENSG00000151914|Q03001-8|DST;REV__nc|ENSG00000151914|Q03001|DST 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98475.5 NaN 1227 1428 2655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2658 24.344 NaN 25768 35 0 10538 0.261 + 21028 PLQQKKSIS 9 15 514.8082829279155 NaN 0 514.808349609375 PEAK HCD FTMS 0 0 0 2655 5757.685546875 0.9440464040421961 3 -0.03142356872558594 3 Unmodified _PLQQKKSIS_ ENST00000548252.1_1_12:95451549-95452129:-|nuORF 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90420.4 NaN 1228 1428 2655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2660 24.349 NaN 328700 35 0 38132 0.411 + 4061 ESGPSIVHR 9 77 491.25914955881217 980.5037461844244 2 491.25909423828125 MULTI HCD FTMS 0 0 0 2659 146738.9375 0.06398433453837164 41 -0.5367755889892578 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 76.82478488871298 0.006879825292024087 1 ESGPS{I|L}VHR 9 0 + 96.979 0 0 9.8908 9.8908 99.284 0 0 0 71.73393743112328 21.478174818886373 21.478174818886373 89.33056854354177 0 1.2416440611282626 1.6989700043360187 0 0.5 + + ESGPS{I|L}VHR;[RH][YN]VHR 9.8908;0.78007 +;- + 327 + NaN NaN 185502.2 NaN 1229 1429 2659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2662 24.357 NaN 21009 35 0 6358.6 0.327 + 21189 PQAALRCCV 9 13 480.74101562353616 959.4674783138723 2 480.7412414550781 MULTI HCD FTMS 0 0 0 2661 9403.1953125 0.2401546268178443 19 -0.24025535583496094 1 Unmodified _PQAALRCCV_ REV__ENSG00000114993|ENST00000272430|RTKN;REV__nc|ENSG00000114993|Q9BST9-2|RTKN;REV__nc|ENSG00000114993|Q9BST9-3|RTKN 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91206.9 NaN 1230 1430 2661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2663 24.362 NaN 41348 35 0 12149 0.261 + 9661 HVEYEWRL 8 16 566.2807116154199 NaN 0 566.2804565429688 PEAK HCD FTMS 0 0 0 2661 3943.251953125 0.5362545437787798 7 -0.08777427673339844 2 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89014.7 NaN 1231 1430 2661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2666 24.375 NaN 166860 35 0 23828 0.327 + 34987 YSTENQLR 8 39 505.74867667363594 1009.4828004140719 2 505.7484436035156 MULTI HCD FTMS 0 0 0 2665 32748.302734375 0.0455653363174378 49 -0.6621761322021484 1 Unmodified _YSTENQLR_ REV__ENSG00000198876|ENST00000361264|DCAF12 2.302733041254933 0.5385759549224092 1 R 1 -1 14.604 0 0 1.4467 0 0 835.3722942878985 0 835.3722942878985 0 2.129843661361406 0 0 0 0 0 0 0 R 1.4467 + + 15 + NaN NaN 112816 NaN 1232 1432 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2667 24.379 NaN 68394 35 0 12112 0.261 + -1 EMHSKKKL 8 29 508.7812728556036 1015.5479927780073 2 508.7807312011719 MULTI HCD FTMS 0 0 0 2665 27340.51171875 0.3846425791075433 12 -0.15531539916992188 2 Oxidation (M) _EM(Oxidation (M))HSKKKL_ REV__ENSG00000164114|ENST00000311277|MAP9;REV__nc|ENSG00000164114|Q49MG5-2|MAP9 3.944395688203298 0.5361403129012058 1 K{I|L} 2 -1 19.464 0 0 1.9166 0 0 756.3634510724625 0 756.3634510724625 0 12.474250108400469 0 0 0 0 0 0 0 K{I|L} 1.9166 + + 4 NaN NaN 95636.8 NaN 1233 1432 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2668 24.383 NaN 24809 35 0 5085.9 0.261 -1 WRNGLPCM 8 21 496.7250889726033 NaN 0 496.71075439453125 PEAK HCD FTMS 0 0 0 2665 3390.17138671875 0.46722776942508354 -1 0.0076141357421875 3 Oxidation (M) _WRNGLPCM(Oxidation (M))_ ENST00000502171.2_1_5:52405708-52408105:+|nuORF;ENST00000512301.1_1_5:52405708-52409697:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101624.3 NaN 1234 1432 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2669 24.386 NaN 21729 35 0 4938.4 0.261 + 28654 TRTATNATTTT 11 18 569.7885617358208 1137.5625705384416 2 569.78759765625 MULTI HCD FTMS 0 0 0 2665 5365.9794921875 0.4839243012870916 8 -0.10375213623046875 4 Unmodified _TRTATNATTTT_ sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90754.9 NaN 1235 1432 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2671 24.392 NaN 155560 35 0 18470 0.327 + 7616 FYHTPGSV 8 43 454.2199976568916 NaN 0 454.2316589355469 PEAK HCD FTMS 0 0 0 2670 1919.4822998046875 1 0 0 1 Unmodified _FYHTPGSV_ ENSG00000146243|ENST00000369940|IRAK1BP1 5.760428011301431 0.38822285293237185 1 QNAVQ 5 8 25.177 0 0 2.7776 0 0 192.04392490187075 171.08858667545158 363.13251157732236 0 0 0 0 0 0 0 0 0.5 QNAVQ 2.7776 - 45 + NaN NaN 106059.8 NaN 1236 1433 2670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2672 24.396 NaN 119660 35 0 12449 0.261 + 28673 TSETPQPPR 9 42 506.75663884806306 1011.4987247629261 2 506.7567138671875 MULTI HCD FTMS 0 0 0 2670 53246.99609375 0.19352799459726586 -43 0.4522285461425781 2 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 26.268140514670165 0.13340543277302316 1 {[MG]|[TS]}ET 4 5 24.693 0 0 2.4412 0 0 0 590.3060205259596 590.3060205259596 17.703037561203843 0 0 0 0 0.8494850021680094 0 0 0 + {[MG]|[TS]}ET 2.4412 + + 12 + NaN NaN 106523.8 NaN 1237 1433 2670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2673 24.4 NaN 7907.8 35 0 1701.5 0.261 + -1 VWMRFFLFC 9 8 632.8040161132812 NaN 0 632.8040161132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _VWM(Oxidation (M))RFFLFC_ REV__ENST00000519531.5_1_20:61914279-61914831:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92010.8 NaN 1238 1433 2670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2675 24.405 NaN 12138 35 0 3053.1 0.327 -1 WERLNCAAE 9 10 574.7612289398334 1147.5079049464666 2 574.7598876953125 MULTI HCD FTMS 0 0 0 2674 5436.7646484375 0.1378647732129759 -23 0.23702239990234375 1 Carbamidomethyl (C) _WERLNC(Carbamidomethyl (C))AAE_ ENSG00000174442|ENST00000307897|ZWILCH;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENST00000567926.5_1_15:66797640-66797730:+|nuORF 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82081.2 NaN 1239 1434 2674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2676 24.41 NaN 39690 35 0 10171 0.261 + -1 CFDRRCIF 8 21 558.7579233431426 1115.501293753085 2 558.75830078125 MULTI HCD FTMS 0 0 0 2674 3048.754638671875 0.16047304347700933 -5 0.05577659606933594 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FDRRCIF_ REV__ENSG00000159905|ENST00000587682|ZNF221 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86146.5 NaN 1240 1434 2674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2678 24.415 NaN 85564 35 0 6439.2 0.327 + 21752 QAEQEDRAL 9 41 530.2567575688801 1058.49896220456 2 530.2565307617188 MULTI HCD FTMS 0 0 0 2677 52370.125 0.8356765371446923 -1 0.010141372680664062 1 Unmodified _QAEQEDRAL_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 7.608950283845883 0.29333554423920943 1 [QA]EQED 6 3 25.406 0 0 2.4002 0 0 0 355.2098482721313 355.2098482721313 18.416375079047498 0 0 0 0 0 0 0 0 + [QA]EQED 2.4002 + + 36 + NaN NaN 89406 NaN 1241 1435 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2679 24.419 NaN 37236 35 0 4805.3 0.261 -1 TAVKNDYEM 9 24 543.7423522136379 1085.4701514940757 2 543.7416381835938 MULTI HCD FTMS 0 0 0 2677 23330.21484375 0.09945107325603886 -26 0.27178382873535156 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 5.296884461304476 0.3108627248283497 1 V[PG] 3 -1 12.447 0 0 1.1467 0 0 814.3169422834 0 814.3169422834 0 11.338031200885156 0 0 0 0.5 0 0 0 V[PG] 1.1467 - 7 NaN NaN 93507.7 NaN 1242 1435 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2680 24.423 NaN 38040 35 0 6429.3 0.261 + 12125 KKKKKKKKKSF 11 20 469.32838077551366 NaN 0 469.328125 PEAK HCD FTMS 0 0 0 2677 9090.9267578125 0.4626397780468292 7 -0.08510971069335938 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107344.7 NaN 1243 1435 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2681 24.426 NaN 23824 35 0 4446.7 0.261 + 32472 WEKRFFIL 8 17 569.8244293171817 NaN 0 570.2916259765625 PEAK HCD FTMS 0 0 0 2677 2166.3076171875 0.47403091320601826 -3 0.04013824462890625 4 Unmodified _WEKRFFIL_ ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99697.7 NaN 1244 1435 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2683 24.432 NaN 253720 35 0 47250 0.327 + 2589 DTSGGTTALR 10 50 489.7462447331485 977.477936533097 2 489.7459716796875 MULTI HCD FTMS 0 0 0 2682 113255.953125 0.9458109354424017 1 -0.013492584228515625 1 Unmodified _DTSGGTTALR_ ENSG00000167986|ENST00000301764|DDB1 110.79276546118962 5.020237097528524E-05 1 {[ES]|[DT]|[{I|L}C]}SGGTTA{I|L}R 10 0 + 79.488 0 0 8.1319 8.1319 92.566 0 0 0 69.03003171804023 13.037275116073346 13.037275116073346 9.784700126913393 0 2.329689690656103 0 0.805462187404089 0 + + {[ES]|[DT]|[{I|L}C]}SGGTTA{I|L}R;{[ES]|[DT]|[{I|L}C]}SNTTA{I|L}R;{[MG]|[TS]}DGGTTA{I|L}R;{[MG]|[TS]}DNTTA{I|L}R 8.1319;7.1309;4.6372;3.738 +;-;-;- + 119 + NaN NaN 116893.7 NaN 1245 1436 2682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2684 24.436 NaN 36388 35 0 5724.5 0.261 -1 ALDECQNLM 9 18 555.2335270369534 1108.4525011407068 2 555.2329711914062 MULTI HCD FTMS 0 0 0 2682 6663.2734375 0.19419510996148767 -10 0.115875244140625 2 Carbamidomethyl (C),Oxidation (M) _ALDEC(Carbamidomethyl (C))QNLM(Oxidation (M))_ ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 3.2813086475875832 0.32614229037259 1 [{I|L}A]D 3 -1 15.458 0 0 1.3945 0 0 0 806.2849825494749 806.2849825494749 15.45757490560675 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.3945 + + 2 + NaN NaN 82185.3 NaN 1246 1436 2682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2685 24.44 NaN 36172 35 0 7804.1 0.261 -1 LKMYKKMH 8 21 547.7956014797479 1093.5766500262957 2 547.7951049804688 MULTI HCD FTMS 0 0 0 2682 4345.46923828125 0.4843528202770364 -5 0.0643463134765625 3 Oxidation (M) _LKMYKKM(Oxidation (M))H_ ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79076.8 NaN 1247 1436 2682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2687 24.445 NaN 200500 35 0 29624 0.327 + 5494 FKETWLFYNG 10 62 435.54865661797754 1303.6241404541327 3 435.5483093261719 MULTI HCD FTMS 0 0 0 2686 56267.0390625 0.5115050590641397 16 -0.197418212890625 1 Unmodified _FKETWLFYNG_ REV__ENSG00000100351|ENST00000344138|GRAP2 3.5870582119611467 0.4563168352879256 1 A 1 -1 6.9897 0 0 0.53617 0 0 660.3043905535452 569.2592257135374 1229.5636162670826 0 0 0 0 0 0 0 0 0 A 0.53617 - 6 + NaN NaN 109507.4 NaN 1248 1437 2686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2688 24.45 NaN 29161 35 0 3273.9 0.261 + 29341 TYPDYGGEFD 10 22 582.2300887254469 1162.4456245176937 2 582.7321166992188 MULTI HCD FTMS 0 0 0 2686 7806.84521484375 0.9837546299184751 -8 0.09600448608398438 2 Unmodified _TYPDYGGEFD_ REV__tr|U7SPQ3|U7SPQ3_FUSNUMajoroutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01860PE=4SV=1 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90180.9 NaN 1249 1437 2686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2690 24.455 NaN 162540 35 0 16441 0.326 + 8944 HPDRSQPAF 9 35 527.7568659698096 1053.4991790064191 2 527.756591796875 MULTI HCD FTMS 0 0 0 2689 105644.6171875 0.98530571375568 -2 0.023624420166015625 1 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 29.84058131909904 0.11198220037953927 1 HPVH 4 7 35.165 0 0 3.3379 0 0 0 580.2493380182249 580.2493380182249 16.581531501239297 0 0 0 0 0.9247425010840047 0 0 0 HPVH 3.3379 - 55 + NaN NaN 109390 NaN 1250 1438 2689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2691 24.46 NaN 43064 35 0 4740.5 0.261 + 25137 SAHTQIQAI 9 23 484.7616726162944 967.5087922993888 2 484.76177978515625 MULTI HCD FTMS 0 0 0 2689 24518.6796875 0.3675792615552264 10 -0.12243270874023438 2 Unmodified _SAHTQIQAI_ REV__CON__Q7RTS7;REV__ENSG00000170484|ENST00000305620|KRT74 4.897010918128616 0.31389406404703984 1 A{I|L} 2 -1 16.454 0 0 1.7006 0 0 765.3775501935562 0 765.3775501935562 0 5.996075289514094 0 0 0 0 0 0 0 A{I|L} 1.7006 + + 3 NaN NaN 84817.7 NaN 1251 1438 2689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2692 24.463 NaN 13999 35 0 4174.9 0.261 + 9659 HVEYEWRL 8 9 566.2819219695997 1130.5492910059993 2 566.78369140625 MULTI HCD FTMS 0 0 0 2689 3723.9794921875 0.7347985479975039 -1 0.0101318359375 3 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84976.5 NaN 1252 1438 2689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2694 24.469 NaN 45504 35 0 5714.9 0.327 + 27504 TAADDHQAL 9 29 471.21963173661294 940.4247105400259 2 471.21923828125 MULTI HCD FTMS 0 0 0 2693 18061.642578125 0.3659847634196694 -11 0.13265609741210938 1 Unmodified _TAADDHQAL_ ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 8.745405648335112 0.2847203663274469 1 [TA]A 3 6 28.741 0 0 3.0562 0 0 0 694.2822970025999 694.2822970025999 22.085521743960324 0 0 0 0 0.3054621874040891 1.5228787452803376 0 0 + [TA]A 3.0562 + + 8 + NaN NaN 89333.7 NaN 1253 1439 2693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2695 24.473 NaN 41150 35 0 9908 0.261 + -1 REPVDTHM 8 23 500.729585508408 999.444618083616 2 500.7291564941406 MULTI HCD FTMS 0 0 0 2693 11680.1943359375 0.049141254399841384 186 -2.4373207092285156 2 Oxidation (M) _REPVDTHM(Oxidation (M))_ REV__ENSG00000132881|ENST00000375599|CPLANE2 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F} 1 -1 19.604 0 0 1.9615 0 0 834.3993432806848 0 834.3993432806848 0 19.604093769761874 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.9615 + + 1 + NaN NaN 86504.5 NaN 1254 1439 2693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2697 24.479 NaN 14673 35 0 5175.7 0.327 -1 WERLNCAAE 9 15 574.7612289398334 1147.5079049464666 2 574.7619018554688 MULTI HCD FTMS 0 0 0 2696 6016.5615234375 0.15256718721289764 -17 0.1922607421875 1 Carbamidomethyl (C) _WERLNC(Carbamidomethyl (C))AAE_ ENSG00000174442|ENST00000307897|ZWILCH;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENST00000567926.5_1_15:66797640-66797730:+|nuORF 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89201.5 NaN 1255 1440 2696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2698 24.483 NaN 37552 35 0 5817.6 0.261 + -1 DWWRQFWTRLC 11 24 551.9294128672866 NaN 0 551.7540893554688 PEAK HCD FTMS 0 0 0 2696 2064.419677734375 0.9766036349046289 1 -0.013265609741210938 2 Carbamidomethyl (C) _DWWRQFWTRLC(Carbamidomethyl (C))_ REV__ENSG00000198089|ENST00000400288|SFI1;REV__ENST00000382162.7_1_22:32002284-32014401:+|nuORF;REV__nc|ENSG00000198089|A8K8P3-10|SFI1;REV__nc|ENSG00000198089|A8K8P3-2|SFI1;REV__nc|ENSG00000198089|A8K8P3-3|SFI1;REV__nc|ENSG00000198089|A8K8P3-4|SFI1;REV__nc|ENSG00000198089|A8K8P3-9|SFI1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100461.2 NaN 1256 1440 2696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2699 24.487 NaN 28994 35 0 8632.9 0.261 + 22133 QIQFPLYN 8 16 511.76831084391057 NaN 0 511.7682189941406 PEAK HCD FTMS 0 0 0 2696 1378.8173828125 0.2628966863013992 -2 0.023395538330078125 3 Unmodified _QIQFPLYN_ REV__ENST00000479846.1_1_9:108336602-108337274:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84151 NaN 1257 1440 2696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2701 24.492 NaN 26698 35 0 5190.2 0.411 + -1 PHLCKCAM 8 31 480.2167053222656 NaN 0 480.2167053222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _PHLC(Carbamidomethyl (C))KCAM_ REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF;REV__UBE2G1-ANKFY1|2|fusion;REV__UBE2G1-ANKFY1|5|fusion 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87074.7 NaN 1258 1441 2700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2703 24.5 NaN 66240 35 0 9509.2 0.327 + 29554 VAAEVAGAGR 10 28 450.74814568500653 899.4817384368131 2 450.7478942871094 MULTI HCD FTMS 0 0 0 2702 28134.716796875 0.4770143268794612 -5 0.055023193359375 1 Unmodified _VAAEVAGAGR_ ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF 23.789781309258295 0.28859042913526417 1 {[VA]|[{I|L}G]}AEVA 6 4 40.45 0 0 4.4971 0 0 0 356.16904627017817 356.16904627017817 40.45039703980876 0 0 0 0 1.805462187404089 0 0 0 + {[VA]|[{I|L}G]}AEVA 4.4971 + + 40 + NaN NaN 89946.2 NaN 1259 1442 2702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2704 24.505 NaN 56217 35 0 21314 0.261 -1 MLGPHMLR 8 20 493.74876945535254 985.4829859775051 2 493.7483825683594 MULTI HCD FTMS 0 0 0 2702 14366.2900390625 0.46993115231876254 -20 0.22367286682128906 2 2 Oxidation (M) _M(Oxidation (M))LGPHM(Oxidation (M))LR_ ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91872.1 NaN 1260 1442 2702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2705 24.508 NaN 41618 35 0 7249.6 0.261 -1 HTGPLHKC 8 25 475.23849717380466 NaN 0 475.2508239746094 PEAK HCD FTMS 0 0 0 2702 1488.992431640625 0.32556216724685777 5 -0.06738853454589844 3 Carbamidomethyl (C) _HTGPLHKC(Carbamidomethyl (C))_ ENSG00000159640|ENST00000290866|ACE;ENST00000579314.5_1_17:61565977-61574724:+|nuORF;nc|ENSG00000159640|P12821-3|ACE 2.302733041254933 0.38822285293237185 1 WV 2 -1 9.464 0 0 0.99782 0 0 271.14391221694683 389.1615389459594 660.3054511629063 0 0 0 0 0 0 0 0 0 WV 0.99782 - 5 + NaN NaN 99554.6 NaN 1261 1442 2702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2706 24.511 NaN 14505 35 0 4536.3 0.261 + -1 MKLMLYVME 9 12 603.2841796875 NaN 0 603.2841796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 3 Oxidation (M) _M(Oxidation (M))KLM(Oxidation (M))LYVM(Oxidation (M))E_ REV__ENST00000402538.7_1_2:33740127-33740184:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84607.5 NaN 1262 1442 2702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2707 24.515 NaN 65924 35 0 13696 0.264 -1 0 25 400.34930419921875 NaN 0 400.34930419921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86492.2 NaN 1263 1442 2702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2709 24.52 NaN 191550 35 0 23254 0.327 + 4062 ESGPSIVHR 9 46 491.25914955881217 980.5037461844244 2 491.25909423828125 MULTI HCD FTMS 0 0 0 2708 62595.9140625 0.027294445321373283 55 -0.7228183746337891 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 55.50274090549119 0.023872834264864425 1 ESGPS{I|L}VHR 9 0 + 89.307 0 0 9.1083 9.1083 98.654 0 0 0 75.57319389984242 21.478174818886373 21.478174818886373 89.30700026649546 0 0.6505149978319906 1.5228787452803376 0 0.5 + + ESGPS{I|L}VHR 9.1083 + + 67 + NaN NaN 108237.5 NaN 1264 1443 2708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2710 24.525 NaN 164250 35 0 20270 0.261 -1 MPVHAAVQM 9 48 508.238422114801 1014.462291296402 2 508.2382507324219 MULTI HCD FTMS 0 0 0 2708 62406.25 0.8752608634577713 -2 0.028163909912109375 2 2 Oxidation (M) _M(Oxidation (M))PVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 30.224811164608877 0.11021837014094292 1 VQ{M(Oxidation (M))|F} 3 -1 43.94 0 0 4.3314 0 0 622.2891173235489 0 622.2891173235489 0 39.3360688456422 0 0 0 1.5 0 0 0.4247425010840047 VQ{M(Oxidation (M))|F} 4.3314 + + 21 + NaN NaN 106713.4 NaN 1265 1443 2708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2712 24.53 NaN 188960 35 0 22452 0.327 + 28674 TSETPQPPR 9 52 506.75663884806306 1011.4987247629261 2 506.7563781738281 MULTI HCD FTMS 0 0 0 2711 79618.359375 0.28937559962705145 -32 0.3455677032470703 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 39.94969957227396 0.06557568441294001 1 {[MG]|[TS]}ET 4 5 28.94 0 0 2.8611 0 0 0 590.3055769255891 590.3055769255891 24.336068845642203 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + {[MG]|[TS]}ET 2.8611 + + 27 + NaN NaN 113708.8 NaN 1266 1444 2711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2713 24.535 NaN 42509 35 0 9522.5 0.261 + 7116 FRSRYDESG 9 19 558.7579233431426 1115.501293753085 2 558.7578125 MULTI HCD FTMS 0 0 0 2711 7958.61376953125 0.41890644699800234 5 -0.06739044189453125 2 Unmodified _FRSRYDESG_ REV__ENSG00000184347|ENST00000519560|SLIT3;REV__ENST00000519486.5_1_5:168179958-168216668:-|nuORF;REV__nc|ENSG00000184347|O75094-2|SLIT3;REV__nc|ENSG00000184347|O75094-3|SLIT3;REV__nc|ENSG00000184347|O75094-4|SLIT3;REV__SLIT3|p.P646Lfs*13|1|0.27|ENSG00000184347|chr5:168752991-168752991|G/-|frameshift_variant 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84965.7 NaN 1267 1444 2711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2715 24.541 NaN 85674 35 0 13072 0.327 + 27789 TAVKNDYEM 9 27 543.7423522136379 1085.4701514940757 2 543.7420654296875 MULTI HCD FTMS 0 0 0 2714 66763.3203125 0.28459591579772997 -16 0.19190597534179688 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 43.981846655682396 0.04706587046877104 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 62.202 0 0 5.7304 5.7304 92.705 0 0 0 62.20168122889959 14.973024840566467 14.973024840566467 62.20168122889959 0 2.2302046884880937 0 0.8807196863200843 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 5.7304 + + 28 + NaN NaN 87921 NaN 1268 1445 2714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2716 24.545 NaN 11695 35 0 2793.4 0.261 + -1 MNPLLIQCLAL 11 12 643.3523252673581 1284.690097601516 2 643.3526000976562 MULTI HCD FTMS 0 0 0 2714 8081.6240234375 0.4943752128949302 -5 0.062374114990234375 2 Carbamidomethyl (C) _MNPLLIQC(Carbamidomethyl (C))LAL_ REV__ENST00000536163.5_2_7:141359822-141360044:-|nuORF 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86201.1 NaN 1269 1445 2714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2718 24.551 NaN 65970 35 0 12706 0.327 + 16373 LSESKPQGQ 9 19 487.2511688877771 972.4877848423542 2 487.2508850097656 MULTI HCD FTMS 0 0 0 2717 27956.19140625 0.7479963557467589 -6 0.07229995727539062 1 Unmodified _LSESKPQGQ_ nc|ENSG00000236882|Q52M75|LINC01554 14.838274106304384 0.23215694253501695 1 E 1 8 4.6041 0 0 0.47343 0 0 485.61932888707923 354.7910250299438 840.410353917023 0 0 0 0 0 0 0 0 0 + E 0.47343 + + 4 + NaN NaN 90590.7 NaN 1270 1446 2717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2719 24.555 NaN 49462 35 0 5799.9 0.261 -1 VPTEENEM 8 27 482.70055172610773 963.3865505190155 2 482.69976806640625 MULTI HCD FTMS 0 0 0 2717 21423.103515625 0.19863512103624506 -14 0.17605209350585938 2 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 20.453626601364224 0.4433031943603284 1 ENE{M(Oxidation (M))|F} 4 -1 38.047 0 0 3.9493 0 0 426.2114430158219 0 426.2114430158219 0 38.047444008242906 0 0 0 0.8494850021680094 0 0 0 ENE{M(Oxidation (M))|F} 3.9493 + + 16 NaN NaN 90682.2 NaN 1271 1446 2717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2720 24.559 NaN 54913 35 0 6545.2 0.261 -1 HTGPLHKC 8 40 475.23802604718446 NaN 0 475.2245178222656 PEAK HCD FTMS 0 0 0 2717 1870.978515625 0.5098566944335242 -3 0.030870437622070312 3 Carbamidomethyl (C) _HTGPLHKC(Carbamidomethyl (C))_ ENSG00000159640|ENST00000290866|ACE;ENST00000579314.5_1_17:61565977-61574724:+|nuORF;nc|ENSG00000159640|P12821-3|ACE 5.230669730166228 0.38822285293237185 1 A 1 -1 5.4846 0 0 0.57826 0 0 531.2281140066752 343.17392908267817 874.4020430893534 0 0 0 0 0 0 0 0 0 A 0.57826 - 5 + NaN NaN 96588.3 NaN 1272 1446 2717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2721 24.562 NaN 79242 35 0 12057 0.261 + 20487 PCPSAQFQVVK 11 30 401.8778357069083 NaN 0 401.877685546875 PEAK HCD FTMS 0 0 0 2717 17376.298828125 0.24567182133924434 662 -12.446115493774414 4 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86715.9 NaN 1273 1446 2717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2723 24.568 NaN 61290 35 0 8762.6 0.327 -1 IADPDEMRM 9 22 555.2335270369534 1108.4525011407068 2 555.2335815429688 MULTI HCD FTMS 0 0 0 2722 25956.876953125 0.756489827627446 1 -0.010152816772460938 1 2 Oxidation (M) _IADPDEM(Oxidation (M))RM(Oxidation (M))_ ENSG00000145780|ENST00000274457|FEM1C 5.731851221503515 0.3075653528928475 1 [{I|L}A]D 3 -1 15.458 0 0 1.3945 0 0 0 806.2822999783448 806.2822999783448 15.45757490560675 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.3945 + + 1 + NaN NaN 92850.4 NaN 1274 1447 2722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2724 24.572 NaN 36762 35 0 10778 0.261 + 12317 KMLSYLRVD 9 21 562.8076439658721 NaN 0 562.8064575195312 PEAK HCD FTMS 0 0 0 2722 3665.142822265625 1 0 0 2 Unmodified _KMLSYLRVD_ REV__ENSG00000069943|ENST00000164305|PIGB 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89444.4 NaN 1275 1447 2722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2726 24.578 NaN 204070 35 0 25683 0.326 -1 RYMPPAHRNF 10 47 435.54865661797754 1303.6241404541327 3 435.5483703613281 MULTI HCD FTMS 0 0 0 2725 63378.015625 0.5761485972209113 27 -0.3775768280029297 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 7.945399516374404 0.4332474418965133 1 PPA 3 -1 21.198 0 0 1.6261 0 0 466.2026010366389 569.2591855630504 1035.4617865996893 0 0 0 0 0 0.5 0 0 0 PPA 1.6261 + + 8 + NaN NaN 109943.5 NaN 1276 1448 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2727 24.582 NaN 128840 35 0 11960 0.261 + 8945 HPDRSQPAF 9 30 527.7568659698096 1053.4991790064191 2 527.7566528320312 MULTI HCD FTMS 0 0 0 2725 85456.6328125 0.7970203388501664 8 -0.101776123046875 2 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 26.268140514670165 0.13340543277302316 1 HPV 3 7 30.93 0 0 2.9359 0 0 0 717.3071763697573 717.3071763697573 12.346368802282015 0 0 0 0 0.9247425010840047 0 0 0 HPV 2.9359 - 13 + NaN NaN 107111.3 NaN 1277 1448 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2728 24.586 NaN 39252 35 0 8878.2 0.261 + 2972 EAAEKEQEL 9 23 523.7535353922423 1045.4925178512844 2 523.7531127929688 MULTI HCD FTMS 0 0 0 2725 11933.486328125 0.6115333832172911 3 -0.03810310363769531 3 Unmodified _EAAEKEQEL_ ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7;nc|ENSG00000183347|Q6ZN66-2|GBP6 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 82570.8 NaN 1278 1448 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2729 24.589 NaN 53132 35 0 10282 0.263 + 3485 EGSNQSDA 8 33 404.15898228928677 NaN 0 404.14959716796875 PEAK HCD FTMS 0 0 0 2725 3471.47314453125 0.6462556212131348 -5 0.05760765075683594 4 Unmodified _EGSNQSDA_ REV__ENSG00000047410|ENST00000367478|TPR;REV__ENST00000492973.1_1_1:186294872-186295316:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110784.8 NaN 1279 1448 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2730 24.592 NaN 28898 35 0 8269.8 0.261 + 18528 MSYPQFGY 8 14 496.71176767791087 NaN 0 496.711181640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MSYPQFGY_ ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4 2.302733041254933 0.38822285293237185 1 P 1 7 4.6041 0 0 0.4644 0 0 513.2251578150031 378.11200891666255 891.3371667316655 0 0 0 0 0 0 0 0 0 + P 0.4644 + + 1 + NaN NaN 80096 NaN 1280 1448 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2732 24.598 NaN 66903 35 0 14078 0.411 + 27505 TAADDHQAL 9 39 471.21963173661294 940.4247105400259 2 471.2193298339844 MULTI HCD FTMS 0 0 0 2731 43491.21875 0.8812666586775196 -1 0.019916534423828125 1 Unmodified _TAADDHQAL_ ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 23.789781309258295 0.1548179064208189 1 [TA]AD 4 5 43.188 0 0 4.5923 0 0 0 579.2548922174436 579.2548922174436 14.247425010840047 0 0 0 0 1 1.6989700043360187 0 0 + [TA]AD 4.5923 + + 40 + NaN NaN 96137 NaN 1281 1449 2731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2734 24.606 NaN 127760 35 0 34590 0.327 + 760 ASGGVLGPW 9 39 422.22285179292464 NaN 0 422.2376403808594 PEAK HCD FTMS 0 0 0 2733 2846.26953125 0.4941291875430306 4 -0.05353546142578125 1 Unmodified _ASGGVLGPW_ ENST00000377294.2_1_6:28219872-28219989:-|nuORF 11.640296217721598 0.23883959125015683 1 GG 2 7 10.969 0 0 1.3021 0 0 158.03852860655996 567.3256480836034 725.3641766901633 0 0 0 0 0 0 0 0 0 + GG 1.3021 + + 25 + NaN NaN 99353.4 NaN 1282 1450 2733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2735 24.61 NaN 33355 35 0 4892.6 0.261 -1 FVNDDRHVM 9 24 574.7612289398334 1147.5079049464666 2 574.7608032226562 MULTI HCD FTMS 0 0 0 2733 27437.22265625 0.6957495355597081 -7 0.08574676513671875 2 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 5.296884461304476 0.3108627248283497 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92465.4 NaN 1283 1450 2733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2737 24.616 NaN 90192 35 0 9546.9 0.327 + 8468 HADPHSIDTL 10 34 553.2672343400287 1104.5199157468574 2 553.267333984375 MULTI HCD FTMS 0 0 0 2736 31684.298828125 0.00641933083465709 -14 0.1706676483154297 1 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 10.073929032068715 0.4168838835836452 1 T{I|L} 2 -1 21.454 0 0 1.9424 0 0 872.3769473670554 0 872.3769473670554 0 0 0 0 0 0 0 0.5 0 T{I|L} 1.9424 + + 8 NaN NaN 89804.3 NaN 1284 1451 2736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2738 24.62 NaN 46010 35 0 4860.7 0.262 -1 TSDIPKAMA 9 31 475.23802604718446 NaN 0 475.22589111328125 PEAK HCD FTMS 0 0 0 2736 3669.616455078125 1 0 0 2 Oxidation (M) _TSDIPKAM(Oxidation (M))A_ ENST00000220888.9_2_8:116616535-116616574:-|nuORF 7.289230182591677 0.2599242500475609 1 Q 1 -1 5.4846 0 0 0.57826 0 0 574.2825268484721 243.0986269586547 817.3811538071268 0 0 0 0 0 0 0 0 0 Q 0.57826 - 7 + NaN NaN 88618.1 NaN 1285 1451 2736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2739 24.624 NaN 35818 35 0 11612 0.261 + 12105 KKKFPEDE 8 23 510.77171710690226 1019.5288812806045 2 511.27288818359375 MULTI HCD FTMS 0 0 0 2736 4177.18798828125 0.1478095818432089 -11 0.13714027404785156 3 Unmodified _KKKFPEDE_ tr|U7T8B2|U7T8B2_FUSNUArsRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00152PE=4SV=1 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93480.9 NaN 1286 1451 2736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2741 24.629 NaN 78763 35 0 33775 0.327 + 3486 EGSPVQQKN 9 19 493.74876945535254 985.4829859775051 2 493.7488098144531 MULTI HCD FTMS 0 0 0 2740 28477.361328125 0.9315139251355976 -10 0.1289348602294922 1 Unmodified _EGSPVQQKN_ REV__ENSG00000143799|ENST00000366794|PARP1;REV__PARP1-LIN9|1|fusion 1.844237919475145 0.33703635659052655 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}P 3 -1 10.458 0 0 1.0612 0 0 0 612.3086031549436 612.3086031549436 4.9730248405664685 0 0 0 0 0 0 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}P 1.0612 - 3 + NaN NaN 88560.7 NaN 1287 1452 2740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2742 24.634 NaN 22149 35 0 6264.1 0.261 -1 KKWMMLPA 8 15 510.77171710690226 1019.5288812806045 2 510.77130126953125 MULTI HCD FTMS 0 0 0 2740 8551.693359375 0.1955602552106247 -12 0.15043067932128906 2 Oxidation (M) _KKWM(Oxidation (M))MLPA_ ENST00000406333.1_1_6:119590382-119590640:-|nuORF 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84443 NaN 1288 1452 2740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2743 24.637 NaN 21814 35 0 4294.4 0.261 + -1 CWPSYFDVM 9 17 582.2300887254469 1162.4456245176937 2 582.2296142578125 MULTI HCD FTMS 0 0 0 2740 1809.8057861328125 0.1457314211108967 10 -0.15517616271972656 3 Oxidation (M) _CWPSYFDVM(Oxidation (M))_ REV__ENSG00000077232|ENST00000264065|DNAJC10;REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF;REV__ENST00000491074.5_1_2:183616895-183641856:+|nuORF;REV__nc|ENSG00000077232|Q8IXB1-2|DNAJC10 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85396.8 NaN 1289 1452 2740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2745 24.643 NaN 125840 35 0 17621 0.327 + 4063 ESGPSIVHR 9 49 491.25914955881217 980.5037461844244 2 491.2591552734375 MULTI HCD FTMS 0 0 0 2744 51545.78515625 0.022476125407958136 65 -0.8468418121337891 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 18.1463463914782 0.20357593197100715 1 {I|L}VHR 4 5 27.423 0 0 2.7968 0 0 457.18155487758685 0 457.18155487758685 0 16.965175419594658 0 0 0 0 0 0 0 + {I|L}VHR 2.7968 + + 18 + NaN NaN 115239.6 NaN 1290 1453 2744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2746 24.647 NaN 62304 35 0 10145 0.261 + 29555 VAAEVAGAGR 10 30 450.74814568500653 899.4817384368131 2 450.7479553222656 MULTI HCD FTMS 0 0 0 2744 32751.0078125 0.5552819336727398 6 -0.08191871643066406 2 Unmodified _VAAEVAGAGR_ ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF 18.373094154950223 0.33925629317698053 1 {[VA]|[{I|L}G]}AEVA 6 4 35.138 0 0 3.9065 0 0 0 356.16941248111567 356.16941248111567 35.13805019828801 0 0 0 0 1.274227503252014 0 0 0 + {[VA]|[{I|L}G]}AEVA 3.9065 + + 16 + NaN NaN 86509.9 NaN 1291 1453 2744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2747 24.651 NaN 23774 35 0 4409.1 0.261 -1 RVCCQHVC 8 17 559.7368684677992 1117.4591840023984 2 559.736328125 MULTI HCD FTMS 0 0 0 2744 5181.7216796875 0.36591117007403756 -11 0.14239501953125 3 3 Carbamidomethyl (C) _RVC(Carbamidomethyl (C))C(Carbamidomethyl (C))QHVC(Carbamidomethyl (C))_ ENST00000369393.7_1_6:90354848-90357787:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83859.9 NaN 1292 1453 2744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2748 24.654 NaN 72124 35 0 13782 0.264 + 14440 LERPGYPECF 10 37 404.1909341924684 1209.550973177605 3 404.19061279296875 MULTI HCD FTMS 0 0 0 2744 7331.29833984375 1 0 0 4 Unmodified _LERPGYPECF_ REV__ENSG00000189056|ENST00000428762|RELN;REV__nc|ENSG00000189056|P78509-2|RELN;REV__nc|ENSG00000189056|P78509-3|RELN;REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant 0.6976657623105312 0.47161084886498755 1 P 1 -1 2.2185 0 0 0.18341 0 0 962.5240699567051 146.94544397525627 1109.4695139319615 0 0 0 0 0 0 0 0 0 P 0.18341 + + 3 + NaN NaN 99156.2 NaN 1293 1453 2744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2750 24.66 NaN 286150 35 0 33707 0.327 + 28675 TSETPQPPR 9 48 506.75663884806306 1011.4987247629261 2 506.75640869140625 MULTI HCD FTMS 0 0 0 2749 125131.53125 0.45479475050687546 -22 0.28446388244628906 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 66.45667989310934 0.010234776021261575 1 {[MG]|[TS]}ET[QP]PPR 9 0 + 49.657 0 0 4.9092 4.9092 90.886 0 0 0 34.172356950594676 13.891252645201781 13.891252645201781 49.65690701563496 0 1.6747425010840047 0 0.4247425010840047 0 + + {[MG]|[TS]}ET[QP]PPR 4.9092 + + 77 + NaN NaN 127328.2 NaN 1294 1454 2749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2751 24.664 NaN 65177 35 0 9479 0.261 -1 CIGHRNFRFFM 11 28 500.9044944310722 1499.6916538934165 3 500.9040832519531 MULTI HCD FTMS 0 0 0 2749 7147.416015625 0.4138244586210258 -3 0.04357147216796875 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))IGHRNFRFFM(Oxidation (M))_ ENSG00000163958|ENST00000296326|ZDHHC19;nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19;nc|ENSG00000163958|Q8WVZ1-3|ZDHHC19 0.09484139111097674 0.41850472438158626 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.0325 0 0 1334.645616151032 0 1334.645616151032 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0325 + + 2 + NaN NaN 81817.6 NaN 1295 1454 2749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2753 24.67 NaN 253570 35 0 35068 0.327 + 27790 TAVKNDYEM 9 50 543.7423522136379 1085.4701514940757 2 543.7420654296875 MULTI HCD FTMS 0 0 0 2752 190580.9375 0.8124005245324419 -6 0.07189369201660156 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 100.0907132914201 0.004261551473353346 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 90.652 0 0 8.3514 8.3514 97.456 0 0 0 7.099257520318872 7.099257520318872 7.099257520318872 75.24858474643892 0 2.774227503252014 1.3010299956639813 1.579689690656103 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F};[TA][{M(Oxidation (M))|F}E][NS]V{M(Oxidation (M))|F}[TA];[TA][{M(Oxidation (M))|F}E][NS]{M(Oxidation (M))|F}V[TA] 8.3514;1.4191;1.1417 +;-;- + 119 + NaN NaN 130868.8 NaN 1296 1455 2752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2754 24.674 NaN 76471 35 0 10525 0.261 + 16374 LSESKPQGQ 9 27 487.2511688877771 972.4877848423542 2 487.25048828125 MULTI HCD FTMS 0 0 0 2752 30923.826171875 0.8273984444511102 3 -0.03425788879394531 2 Unmodified _LSESKPQGQ_ nc|ENSG00000236882|Q52M75|LINC01554 10.073929032068715 0.27331982688540024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 91237.5 NaN 1297 1455 2752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2756 24.679 NaN 167360 35 0 25142 0.327 -1 VPTEENEM 8 31 482.70055172610773 963.3865505190155 2 482.6999206542969 MULTI HCD FTMS 0 0 0 2755 91385.109375 0.8473231830474139 -4 0.05038261413574219 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 54.773552608820026 0.09821516306421259 1 ENE{M(Oxidation (M))|F} 4 -1 50.79 0 0 5.272 0 0 426.21125991035314 0 426.21125991035314 0 38.3103844862778 0 0 0 1.3807196863200843 0 0.4247425010840047 0.3807196863200844 ENE{M(Oxidation (M))|F} 5.272 + + 40 NaN NaN 105155.4 NaN 1298 1456 2755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2757 24.684 NaN 36224 35 0 3962.8 0.261 -1 DHRRVFVHC 9 18 613.3044853529905 1224.5944177727808 2 613.3045654296875 MULTI HCD FTMS 0 0 0 2755 10723.9951171875 0.5165972609086028 6 -0.10479354858398438 2 Carbamidomethyl (C) _DHRRVFVHC(Carbamidomethyl (C))_ ENST00000241041.7_1_11:45935474-45935997:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86061.2 NaN 1299 1456 2755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2758 24.687 NaN 34518 35 0 5797.3 0.261 -1 NFNFCYDC 8 20 570.1976489811535 NaN 0 570.197265625 PEAK HCD FTMS 0 0 0 2755 3902.530517578125 0.61395960720142 1 -0.016582489013671875 3 2 Carbamidomethyl (C) _NFNFC(Carbamidomethyl (C))YDC(Carbamidomethyl (C))_ ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-2|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 0.7936320650641473 0.38822285293237185 1 S 1 -1 4.6041 0 0 0.40444 0 0 818.2327175406289 230.09407983951408 1048.326797380143 0 0 0 0 0 0 0 0 0 S 0.40444 - 1 + NaN NaN 98180.1 NaN 1300 1456 2755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2759 24.691 NaN 31687 35 0 8198.9 0.261 + -1 QRQNETEL 8 17 530.2567575688801 1058.49896220456 2 530.2561645507812 MULTI HCD FTMS 0 0 0 2755 5034.4736328125 0.08033571605595764 20 -0.28403472900390625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QRQNETEL_ REV__ADCY8|p.R360K|1|0.17|ENSG00000155897|chr8:130990424-130990424|C/T|missense_variant;REV__ENSG00000155897|ENST00000286355|ADCY8 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95218.5 NaN 1301 1456 2755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2762 24.704 NaN 200050 35 0 23939 0.327 -1 RYMPPAHRNF 10 42 435.54865661797754 1303.6241404541327 3 435.5484924316406 MULTI HCD FTMS 0 0 0 2761 65809.515625 0.5982525602485901 37 -0.5008792877197266 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 8.444304893310646 0.4306066564229251 1 {M(Oxidation (M))|F}N 2 -1 38.94 0 0 2.9871 0 0 0 1039.4875372735019 1039.4875372735019 26.95046257204389 0 0 0 0 0 1.5228787452803376 0 0.4247425010840047 {M(Oxidation (M))|F}N 2.9871 - 3 + NaN NaN 127544.6 NaN 1302 1458 2761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2763 24.712 NaN 82925 35 0 8956.2 0.269 + 8946 HPDRSQPAF 9 32 527.7568659698096 1053.4991790064191 2 527.7566528320312 MULTI HCD FTMS 0 0 0 2761 41511.6953125 0.3871632239103865 18 -0.25974273681640625 2 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 17.11289562659939 0.2125047172822487 1 HPV 3 7 30.177 0 0 2.8645 0 0 0 717.3091524713499 717.3091524713499 28.187587626244124 0 0 0 0 0.8494850021680094 0 0 0 HPV 2.8645 - 10 + NaN NaN 113717.7 NaN 1303 1458 2761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2764 24.716 NaN 64620 35 0 13766 0.261 + -1 KSCPEQCCF 9 15 579.7230234839304 1157.4314940346608 2 579.7233276367188 MULTI HCD FTMS 0 0 0 2761 8604.1396484375 0.15390191489006402 -5 0.061214447021484375 3 2 Carbamidomethyl (C) _KSC(Carbamidomethyl (C))PEQC(Carbamidomethyl (C))CF_ REV__ENSG00000124201|ENST00000396105|ZNFX1 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106884.2 NaN 1304 1458 2761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2765 24.719 NaN 43635 35 0 6541 0.261 -1 HSLEEQQVC 9 20 565.2494294928341 1128.4843060524681 2 565.25146484375 MULTI HCD FTMS 0 0 0 2761 8225.6728515625 0.41849790897341854 -6 0.07467460632324219 4 Carbamidomethyl (C) _HSLEEQQVC(Carbamidomethyl (C))_ ENSG00000162825|ENST00000698833|NBPF20;ENSG00000219481|ENST00000430580|NBPF1;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000273136|ENST00000620612|NBPF26;ENST00000491285.1_1:146215077-146250826:-|nuORF;nc|ENSG00000219481|Q3BBV0|NBPF1;nc|ENSG00000269713|P0DPF3-2|NBPF9;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82919 NaN 1305 1458 2761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2767 24.725 NaN 72414 35 0 9433.1 0.327 -1 HAVQTVETM 9 36 516.2451184236456 1030.4756839140912 2 516.2449951171875 MULTI HCD FTMS 0 0 0 2766 29676.38671875 0.6213512613410445 -7 0.09537887573242188 1 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 26.268140514670165 0.13340543277302316 1 ET{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.5127 0 0 635.3389412818649 0 635.3389412818649 0 33.09894379144197 0 0 0 1 0 0 0 ET{M(Oxidation (M))|F} 3.5127 + + 11 NaN NaN 103460.6 NaN 1306 1459 2766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2768 24.729 NaN 92539 35 0 13542 0.261 + 19594 NTIGKEEIQQR 11 41 439.236855360958 1314.688736683074 3 439.23675537109375 MULTI HCD FTMS 0 0 0 2766 33834.42578125 0.8899091485658847 -1 0.020704269409179688 2 Unmodified _NTIGKEEIQQR_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 3.3557259375316324 0.404203592500566 1 {[QS]|[NT]}{I|L} 3 8 32.447 0 0 2.4681 0 0 0 983.4912837463917 983.4912837463917 32.447274948966935 0 0 0 0 0.5 1.6989700043360187 0 0 + {[QS]|[NT]}{I|L} 2.4681 + + 4 + NaN NaN 93866.4 NaN 1307 1459 2766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2769 24.733 NaN 31234 35 0 4559.8 0.261 -1 0 25 471.21963173661294 940.4247105400259 2 471.2193908691406 MULTI HCD FTMS 0 0 0 2766 15877.2470703125 0.3217221516619774 9 -0.14139747619628906 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91696.8 NaN 1308 1459 2766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2770 24.736 NaN 48965 35 0 6579.7 0.261 + 9717 HWFLANVYPE 10 27 425.8765164311154 1274.6077198935463 3 425.8764343261719 MULTI HCD FTMS 0 0 0 2766 8438.2041015625 0.47356910210679015 -6 0.08191871643066406 4 Unmodified _HWFLANVYPE_ ENSG00000131386|ENST00000339732|GALNT15;ENST00000489467.1_1_3:16254210-16261548:+|nuORF 1.7422754331352037 0.46608156381052757 1 PE 2 8 20.969 0 0 1.6451 0 0 1030.485341566035 0 1030.485341566035 0 20.969100130080562 0 0 0 0 0 0 0 + PE 1.6451 + + 1 NaN NaN 90527.7 NaN 1309 1459 2766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2771 24.739 NaN 56209 35 0 9649.2 0.261 + -1 YNRALWCM 8 32 565.2494294928341 1128.4843060524681 2 565.2503662109375 MULTI HCD FTMS 0 0 0 2766 9111.7421875 0.4635784964204224 -5 0.06509780883789062 5 Carbamidomethyl (C),Oxidation (M) _YNRALWC(Carbamidomethyl (C))M(Oxidation (M))_ REV__ENST00000451429.6_1_1:26604249-26604363:+|nuORF 5.230669730166228 0.5342319408533849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 113240.8 NaN 1310 1459 2766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2773 24.745 NaN 4410100 35 0 369880 0.327 + 9526 HRDYETATL 9 109 553.2672343400287 1104.5199157468574 2 553.267578125 MULTI HCD FTMS 0 0 0 2772 2727813.75 0.5526629770652504 -5 0.07508277893066406 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 53.832793166522166 0.026208976789938845 1 HPVSDHEAT{I|L} 10 5 + 83.463 0 0 7.5565 7.5565 88.869 0 0 0 6.636189970183807 6.636189970183807 6.636189970183807 6.636189970183807 0 2.9604093769761874 0.8538719643217619 2.399649864804614 0 HPVSDHEAT{I|L};[TA]EHPHEAT{I|L};[{I|L}T]AEEEEAT{I|L};[TA]EPHHEAT{I|L};[TA]EHPEHAT{I|L};[TA]{I|L}EEEEAT{I|L};[TA]EPHEHAT{I|L};[TA]E{I|L}EEEAT{I|L};{[QN]|[E{I|L}]|[KN]}[TA]EEEAT{I|L};[TA]EHPEAHT{I|L} 7.5565;6.9557;6.7535;6.7473;5.8447;5.7564;5.6363;5.5277;5.2367;5.1477 -;-;-;-;-;-;-;-;-;- 18463 + NaN NaN 761165.6 NaN 1311 1460 2772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2774 24.749 NaN 472330 35 0 139470 0.263 + 25125 SAGGPVTVR 9 51 422.2377721347238 842.4609913362476 2 422.2376403808594 MULTI HCD FTMS 0 0 0 2772 400205.0625 0.9731160191985556 3 -0.05603218078613281 2 Unmodified _SAGGPVTVR_ ENST00000378119.8_1_6:24720562-24720727:-|nuORF 74.19965305603844 0.007729275404663812 1 {[SA]|[TG]}GGPVTVR 9 0 + 81.794 0 0 9.7089 9.7089 94.755 0 0 0 4.731975075880328 4.731975075880328 4.731975075880328 10.72559982972642 0 2.274227503252014 1.6989700043360187 0 0 + + {[SA]|[TG]}GGPVTVR;{[SA]|[TG]}NPVTVR;{[QS]|[NT]}GPVTVR 9.7089;8.4358;5.7681 +;-;- + 152 + NaN NaN 169063.8 NaN 1312 1460 2772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2775 24.753 NaN 36659 35 0 5649.2 0.261 -1 FVNDDRHVM 9 21 574.7612289398334 1147.5079049464666 2 574.7611083984375 MULTI HCD FTMS 0 0 0 2772 26395.271484375 0.6693278728065071 3 -0.05603218078613281 3 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 13.042465956692817 0.2476723265019929 1 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}V] 3 -1 14.265 0 0 1.2431 0 0 736.3182240216812 0 736.3182240216812 0 8.780221703767312 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}V] 1.2431 - 18 NaN NaN 84950.2 NaN 1313 1460 2772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2776 24.756 NaN 36316 35 0 9418.3 0.261 + -1 RMWGVKYR 8 23 556.2967461194663 NaN 0 556.2406005859375 PEAK HCD FTMS 0 0 0 2772 1647.828857421875 0.6177378581162085 -1 0.020120620727539062 4 Oxidation (M) _RM(Oxidation (M))WGVKYR_ REV__ENST00000472723.1_1_9:130496559-130497006:-|nuORF 0.6903765706972694 0.38822285293237185 1 {I|L} 1 -1 4.6041 0 0 0.41457 0 0 442.6536596199888 551.8131197565061 994.466779376495 0 0 0 0 0 0 0 0 0 {I|L} 0.41457 - 1 + NaN NaN 85328.5 NaN 1314 1460 2772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2778 24.761 NaN 221710 35 0 25676 0.327 + 8917 HPDFRESS 8 53 487.7200812857982 973.4256096383964 2 487.71978759765625 MULTI HCD FTMS 0 0 0 2777 42801.1015625 0.6229763228695472 -6 0.09168624877929688 1 Unmodified _HPDFRESS_ nc|ENSG00000136854|P61764-2|STXBP1 12.531546534597751 0.5015908124873912 1 VPH 3 7 24.693 0 0 2.5367 0 0 622.2347889630875 0 622.2347889630875 0 -1.2371250542002343 -1.2371250542002343 0 0 0 0 0 0 VPH 2.5367 - 72 NaN NaN 110965.3 NaN 1315 1461 2777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2779 24.765 NaN 68439 35 0 25090 0.261 + 2492 DSAPERKSP 9 20 493.74876945535254 985.4829859775051 2 493.7484436035156 MULTI HCD FTMS 0 0 0 2777 26351.212890625 0.8619661586267493 -1 0.016603469848632812 2 Unmodified _DSAPERKSP_ ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11 1.4819007175156935 0.3397831423917744 1 {[DS]|[MA]|[CV]|TT}A 3 6 10.458 0 0 1.0612 0 0 0 709.3636701941637 709.3636701941637 10.45757490560675 0 0 0 0 0 0 0 0 + {[DS]|[MA]|[CV]|TT}A 1.0612 + + 1 + NaN NaN 90381.9 NaN 1316 1461 2777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2780 24.769 NaN 39989 35 0 8718.5 0.261 -1 DWLIYDEM 8 24 550.7324139892398 NaN 0 550.732421875 PEAK HCD FTMS 0 0 0 2777 16129.5322265625 0.8329073480494759 -2 0.036724090576171875 3 Oxidation (M) _DWLIYDEM(Oxidation (M))_ ENSG00000047188|ENST00000161863|YTHDC2 8.593279151180031 0.38822285293237185 1 E 1 -1 12.474 0 0 1.1346 0 0 165.04657180000157 802.3332150689702 967.3797868689717 0 0 0 0 0 1 0 0 0 E 1.1346 + + 2 NaN NaN 91428 NaN 1317 1461 2777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2781 24.772 NaN 37795 35 0 6532.6 0.261 + 30928 VRIVPLKI 8 24 469.3295517225489 936.6445505118978 2 469.3286437988281 MULTI HCD FTMS 0 0 0 2777 14269.01953125 0.6922581425212214 -13 0.18349647521972656 4 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99453 NaN 1318 1461 2777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2782 24.776 NaN 42892 35 0 16748 0.261 + -1 AQMMCLVAV 9 18 499.22713581626437 NaN 0 499.2268371582031 PEAK HCD FTMS 0 0 0 2777 5467.5517578125 0.5470549875576342 2 -0.0394287109375 5 2 Oxidation (M) _AQM(Oxidation (M))M(Oxidation (M))CLVAV_ REV__ENST00000517767.1_1_8:74896953-74897022:+|nuORF 0.6014990680409731 0.29233206172879045 1 {I|L} 1 -1 3.0989 0 0 0.311 0 0 498.5196880370225 381.81614099674067 880.3358290337632 0 0 0 0 0 0 0 0 0 {I|L} 0.311 + + 1 + NaN NaN 99505.3 NaN 1319 1461 2777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2783 24.779 NaN 8604.8 35 0 4870.4 0.261 + 32751 WREAQARRRG 10 6 643.352783203125 NaN 0 643.352783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _WREAQARRRG_ ENST00000393381.2_1_4:170674981-170679050:-|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95253.7 NaN 1320 1461 2777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2785 24.784 NaN 57538 35 0 6692.7 0.327 + 12380 KPEGKDYAL 9 30 510.77171710690226 1019.5288812806045 2 510.7714538574219 MULTI HCD FTMS 0 0 0 2784 42087.8203125 0.9624649219383323 -2 0.039676666259765625 1 Unmodified _KPEGKDYAL_ ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 14.405379775768559 0.2358970535022398 1 KPE[KS]N 6 5 36.471 0 0 3.5772 0 0 0 333.1567476861938 333.1567476861938 15.501896823007826 0 0 0 0 0.4247425010840047 0 0.3807196863200844 0 KPE[KS]N 3.5772 - 9 + NaN NaN 104838.2 NaN 1321 1462 2784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2786 24.788 NaN 88694 35 0 12865 0.261 + 4064 ESGPSIVHR 9 32 491.25914955881217 980.5037461844244 2 491.2590637207031 MULTI HCD FTMS 0 0 0 2784 45713.3046875 0.019932919167957804 74 -0.9347515106201172 2 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 9.38312468134398 0.279288223203164 1 {I|L}VHR 4 5 29.553 0 0 3.014 0 0 457.18216522914935 0 457.18216522914935 0 22.562893943202624 0 0 0 0 0 0 0 + {I|L}VHR 3.014 + + 11 + NaN NaN 112138.3 NaN 1322 1462 2784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2787 24.792 NaN 50812 35 0 6013.4 0.261 + 20412 NYYPNSFGAP 10 27 565.2494294928341 1128.4843060524681 2 565.2501220703125 MULTI HCD FTMS 0 0 0 2784 10364.962890625 0.5273386596562342 -2 0.039676666259765625 3 Unmodified _NYYPNSFGAP_ ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF 5.296884461304476 0.4472664531305844 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 10 13.952 0 0 1.2364 0 0 738.2921196284432 0 738.2921196284432 0 4.9730248405664685 0 0 0 0.5 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.2364 - 17 + NaN NaN 95081.7 NaN 1323 1462 2784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2788 24.795 NaN 61209 35 0 10168 0.262 + -1 SWPGCHLV 8 40 478.2274953199896 NaN 0 478.2276306152344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _SWPGC(Carbamidomethyl (C))HLV_ REV__ENSG00000116996|ENST00000366570|ZP4 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86715.3 NaN 1324 1462 2784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2790 24.8 NaN 256790 35 0 33777 0.327 + 27791 TAVKNDYEM 9 46 543.7423522136379 1085.4701514940757 2 543.7425537109375 MULTI HCD FTMS 0 0 0 2789 213954.984375 0.9120384431553152 2 -0.020112991333007812 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 103.82355648334675 0.003950725192926219 1 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 95.429 0 0 8.7914 8.7914 95.346 0 0 0 7.806037127601968 7.806037127601968 7.806037127601968 17.014224667125717 0 2.822682509756042 1.3979400086720375 1.610924374808178 0 + + [TA]VKNDYE{M(Oxidation (M))|F};[TA]VKGGDYE{M(Oxidation (M))|F} 8.7914;7.224 +;- + 102 + NaN NaN 116202.3 NaN 1325 1463 2789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2791 24.805 NaN 431790 35 0 59641 0.261 + 28676 TSETPQPPR 9 61 506.75663884806306 1011.4987247629261 2 506.756591796875 MULTI HCD FTMS 0 0 0 2789 220659.65625 0.8019949273269334 -13 0.19478607177734375 2 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 62.57269311338072 0.013982455292112035 1 {[MG]|[TS]}ET 4 5 36.471 0 0 3.6056 0 0 0 590.3050227922199 590.3050227922199 31.778259348524358 0 0 0 0 1.5 0 1.1549471895720984 0 + {[MG]|[TS]}ET 3.6056 + + 107 NaN NaN 142089 NaN 1326 1463 2789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2792 24.808 NaN 224170 35 0 65415 0.261 + 22031 QGDMEGIIPG 10 46 508.7395222764758 1015.4644916197516 2 508.73944091796875 MULTI HCD FTMS 0 0 0 2789 68946.9453125 0.5923510066104135 -2 0.0394287109375 3 Unmodified _QGDMEGIIPG_ ENSG00000013016|ENST00000322054|EHD3;nc|ENSG00000013016|Q9NZN3-2|EHD3 13.042465956692817 0.38911719078024076 1 {[QG]|[NA]}D 3 7 35.234 0 0 3.4697 0 0 0 712.3350720243016 712.3350720243016 21.523722004121453 0 0 0 0 0.8494850021680094 1.3979400086720375 0 0.3807196863200844 + {[QG]|[NA]}D 3.4697 + + 74 NaN NaN 118730.2 NaN 1327 1463 2789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2794 24.813 NaN 61786 35 0 8538.5 0.327 + -1 CGYRMAIMQ 9 37 565.2494294928341 1128.4843060524681 2 565.24853515625 MULTI HCD FTMS 0 0 0 2793 19655.23046875 1 0 0 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GYRMAIMQ_ REV__tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 3.944395688203298 0.32111559684428237 1 Q 1 -1 7.3464 0 0 0.65099 0 0 408.16949999953687 589.2421969049436 997.4116969044806 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.65099 + + 12 + NaN NaN 89278.6 NaN 1328 1464 2793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2796 24.82 NaN 167350 35 0 19139 0.327 -1 VPTEENEM 8 47 482.70055172610773 963.3865505190155 2 482.7000732421875 MULTI HCD FTMS 0 0 0 2795 67250.4921875 0.6235468939254387 5 -0.06516838073730469 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 19.256988751693697 0.45210759540527456 1 ENE{M(Oxidation (M))|F} 4 -1 34.575 0 0 3.5889 0 0 426.2106190412125 0 426.2106190412125 0 10.16207842876998 0 0 0 0.6861818737241735 0 0 0 ENE{M(Oxidation (M))|F} 3.5889 + + 44 NaN NaN 104004.6 NaN 1329 1465 2795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2797 24.825 NaN 38768 35 0 5960.2 0.261 + -1 MSDAYAMP 8 30 459.1719822091014 NaN 0 459.1722106933594 PEAK HCD FTMS 0 0 0 2795 28018.20703125 0.8490951731162318 53 -0.6686573028564453 2 2 Oxidation (M) _M(Oxidation (M))SDAYAM(Oxidation (M))P_ REV__ENSG00000144227|ENST00000272641|NXPH2;REV__NXPH2|p.P68S|1|0.07|ENSG00000144227|chr2:138671515-138671515|G/A|missense_variant 0.7936320650641473 0.38822285293237185 1 S 1 -1 4.6041 0 0 0.50245 0 0 535.1978634887122 291.0721834772094 826.2700469659217 0 0 0 0 0 0 0 0 0 S 0.50245 + + 1 + NaN NaN 86427.7 NaN 1330 1465 2795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2798 24.828 NaN 62788 35 0 9659.4 0.261 + -1 VNPMPWVV 8 43 479.2446842981733 NaN 0 479.24462890625 PEAK HCD FTMS 0 0 0 2795 7823.54248046875 0.7797701931898725 -5 0.07614517211914062 3 Oxidation (M) _VNPM(Oxidation (M))PWVV_ REV__ENST00000325110.10_1_5:43290999-43291044:-|nuORF 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104567.6 NaN 1331 1465 2795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2800 24.833 NaN 75568 35 0 6104.5 0.327 -1 TPGPSEESM 9 39 475.69202978679186 NaN 0 475.69207763671875 PEAK HCD FTMS 0 0 0 2799 33665.1953125 0.6899890820787972 -1 0.012653350830078125 1 Oxidation (M) _TPGPSEESM(Oxidation (M))_ chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 21.74664581756881 0.17567436591797916 1 SE 2 -1 25.217 0 0 2.6561 0 0 165.04494649573377 565.2262056940061 730.27115218974 0 0 0 0 0 1 0 0.4247425010840047 0 SE 2.6561 + + 13 + NaN NaN 98505.7 NaN 1332 1466 2799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2801 24.838 NaN 175460 35 0 25331 0.261 -1 RYMPPAHRNF 10 43 435.54865661797754 1303.6241404541327 3 435.5484313964844 MULTI HCD FTMS 0 0 0 2799 59876.1171875 0.5443139957036643 45 -0.5654277801513672 2 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 12.174745833636585 0.39723355204102767 1 PA 2 -1 10.969 0 0 0.84143 0 0 563.253548268389 569.2582933706551 1132.5118416390442 0 0 0 0 0 0 0 0 0 PA 0.84143 + + 6 + NaN NaN 108741.4 NaN 1333 1466 2799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2803 24.843 NaN 263010 35 0 29553 0.327 + 3070 EAGPSIVHR 9 50 483.26188427572185 964.5092156182437 2 483.2617492675781 MULTI HCD FTMS 0 0 0 2802 121169.453125 0.18434980769708043 -11 0.1636638641357422 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 24.990960013464015 0.14443998892849796 1 {[CP]|[EA]}GPS{I|L}VHR 9 0 + 56.348 0 0 5.8422 5.8422 92.745 0 0 0 29.41987643100136 16.478174818886373 16.478174818886373 56.348200093054714 0 0.3494850021680094 0 0 0 + + {[CP]|[EA]}GPS{I|L}VHR 5.8422 + + 86 + NaN NaN 119142.5 NaN 1334 1467 2802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2804 24.847 NaN 108900 35 0 14926 0.261 + -1 CLCATHMYS 9 28 579.7230234839304 1157.4314940346608 2 579.7228393554688 MULTI HCD FTMS 0 0 0 2802 48038.234375 0.8592580502331558 4 -0.05589866638183594 2 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LC(Carbamidomethyl (C))ATHM(Oxidation (M))YS_ REV__ENSG00000143493|ENST00000366994|INTS7;REV__nc|ENSG00000143493|Q9NVH2-4|INTS7 2.0597508629832335 0.3354026079994024 1 D 1 -1 0.088644 0 0 0.0076587 0 0 653.2581064387608 386.1308687799438 1039.3889752187047 0 0 0 0 0 0 0 0 0 D 0.0076587 - 1 + NaN NaN 96494.1 NaN 1335 1467 2802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2805 24.851 NaN 79549 35 0 12614 0.261 -1 HAVQTVETM 9 25 516.2451184236456 1030.4756839140912 2 516.2451171875 MULTI HCD FTMS 0 0 0 2802 28879.64453125 0.604669420392599 1 -0.022729873657226562 3 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 26.268140514670165 0.13340543277302316 1 ET{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.5127 0 0 635.3398112184295 0 635.3398112184295 0 33.09894379144197 0 0 0 1 0 0 0 ET{M(Oxidation (M))|F} 3.5127 + + 11 NaN NaN 102566 NaN 1336 1467 2802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2806 24.854 NaN 39739 35 0 9448.6 0.261 + 8947 HPDRSQPAF 9 21 527.7568659698096 1053.4991790064191 2 527.7567138671875 MULTI HCD FTMS 0 0 0 2802 10729.4736328125 0.10006957247275575 27 -0.35312461853027344 4 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 6.723162845929126 0.3000504726104499 1 HY 2 8 20.969 0 0 1.9904 0 0 0 750.3712738691345 750.3712738691345 20.969100130080562 0 0 0 0 0 0 0 0 HY 1.9904 - 2 + NaN NaN 95434.2 NaN 1337 1467 2802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2807 24.857 NaN 39174 35 0 7631.2 0.261 + 33022 YCFEILYKQR 10 26 454.9005437608679 NaN 0 454.9007263183594 PEAK HCD FTMS 0 0 0 2802 13851.875 0.2556043190244756 40 -0.5053386688232422 5 Unmodified _YCFEILYKQR_ REV__ENSG00000066185|ENST00000372565|ZMYND12;REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82421.6 NaN 1338 1467 2802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2808 24.861 NaN 19557 35 0 3478.9 0.261 -1 GCMLQWYW 8 17 572.2409207526723 NaN 0 572.2407836914062 PEAK HCD FTMS 0 0 0 2802 11076.4619140625 0.8803341891439521 1 -0.022729873657226562 6 Carbamidomethyl (C) _GC(Carbamidomethyl (C))MLQWYW_ ENST00000358746.6_1_5:94852111-94852410:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99502.9 NaN 1339 1467 2802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2810 24.866 NaN 28119 35 0 5275.2 0.327 + 34856 YSAAESATSTM 11 17 559.7368684677992 1117.4591840023984 2 559.7362670898438 MULTI HCD FTMS 0 0 0 2809 2740.262939453125 0.19350572656505263 3 -0.033168792724609375 1 Unmodified _YSAAESATSTM_ REV__ENSG00000108591|ENST00000225729|DRG2;REV__ENST00000496428.6_1_17:17997264-18002989:+|nuORF;REV__ENST00000578173.5_1_17:17991241-18001751:+|nuORF;REV__ENST00000578767.5_1_17:17997264-18002438:+|nuORF;REV__ENST00000582314.5_1_17:17997264-18003464:+|nuORF;REV__ENST00000583162.1_1_17:17991337-18002989:+|nuORF;REV__ENST00000584212.1_1_17:17997264-18001751:+|nuORF 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101054.1 NaN 1340 1468 2809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2812 24.873 NaN 5545200 35 0 463810 0.327 + 9527 HRDYETATL 9 110 553.2672343400287 1104.5199157468574 2 553.267822265625 MULTI HCD FTMS 0 0 0 2811 3985506.75 0.8074752264771194 4 -0.05220222473144531 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 53.832793166522166 0.026208976789938845 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDHEAT{I|L} 10 5 + 86.877 0 0 7.8656 7.8656 87.293 0 0 0 2.0293898105400388 7.884524452577196 2.0293898105400388 2.0293898105400388 0 2.5431576817365436 0 2.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDHEAT{I|L};[VP]HSDHEAT{I|L};HPVSDHEAT{I|L};[TA]EHPHEAT{I|L};[{I|L}T]AEEEEAT{I|L};[TA]EPHHEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDEHAT{I|L};[VP]HSDEHAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDEAHT{I|L};[TA]{I|L}EEEEAT{I|L} 7.8656;7.6819;7.1518;6.8913;6.8514;6.8141;6.6415;6.4578;5.9163;5.7564 -;-;-;-;-;-;-;-;-;- 24717 NaN NaN 882427.9 NaN 1341 1469 2811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2813 24.877 NaN 167790 35 0 43720 0.263 + 25126 SAGGPVTVR 9 39 422.2377721347238 842.4609913362476 2 422.2376708984375 MULTI HCD FTMS 0 0 0 2811 125331.1953125 0.3047482535628761 12 -0.1640167236328125 2 Unmodified _SAGGPVTVR_ ENST00000378119.8_1_6:24720562-24720727:-|nuORF 34.93206674587334 0.08860942999206235 1 {[SA]|[TG]}GG[VP]T[RV] 9 0 + 53.407 0 0 6.3394 6.3394 89.59 0 0 0 53.40674667758151 4.762036441594191 4.762036441594191 10.285371682087217 0 1.805462187404089 1.6989700043360187 0 0 + + {[SA]|[TG]}GG[VP]T[RV];{[SA]|[TG]}N[VP]T[RV] 6.3394;5.1185 +;- + 49 + NaN NaN 109049.2 NaN 1342 1469 2811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2814 24.881 NaN 30141 35 0 4430.1 0.261 -1 FVNDDRHVM 9 18 574.7612289398334 1147.5079049464666 2 574.7613525390625 MULTI HCD FTMS 0 0 0 2811 25102.353515625 0.6365422265497893 12 -0.1640167236328125 3 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85077.2 NaN 1343 1469 2811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2816 24.886 NaN 197100 35 0 33033 0.327 + 29444 TYTNTHTH 8 41 487.7200812857982 973.4256096383964 2 487.71990966796875 MULTI HCD FTMS 0 0 0 2815 39189.2265625 0.5704049514790531 3 -0.03936576843261719 1 Unmodified _TYTNTHTH_ ENST00000494087.5_1_13:45780977-45781184:+|nuORF 7.910154910731844 0.5302565402355366 1 TAEHA 5 6 31.599 0 0 3.2462 0 0 0 461.1817721002563 461.1817721002563 10.62977812912628 0 0 0 0 0 0 0.3807196863200844 0 TAEHA 3.2462 - 32 + NaN NaN 114897.8 NaN 1344 1470 2815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2817 24.89 NaN 39482 35 0 5966.6 0.261 + 35360 YYATHERTS 9 22 564.2583453864368 1126.5021378396734 2 564.7600708007812 MULTI HCD FTMS 0 0 0 2815 7669.3740234375 0.6176876084854979 6 -0.07760429382324219 2 Unmodified _YYATHERTS_ REV__ENSG00000010256|ENST00000203407|UQCRC1;REV__ENST00000415995.5_1_3:48636563-48647036:-|nuORF;REV__ENST00000463708.1_1_3:48642027-48647053:-|nuORF;REV__ENST00000467690.5_1_3:48641664-48646729:-|nuORF 2.0597508629832335 0.3354026079994024 1 T 1 -1 2.4743 0 0 0.21964 0 0 628.2997280269766 394.1376131647094 1022.4373411916861 0 0 0 0 0 0 0 0 0 T 0.21964 + + 1 + NaN NaN 79897 NaN 1345 1470 2815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2818 24.894 NaN 50910 35 0 10338 0.261 + 26252 SQHPNRRP 8 31 496.26194800775045 990.5093430823009 2 496.26190185546875 MULTI HCD FTMS 0 0 0 2815 12102.9599609375 1 0 0 3 Unmodified _SQHPNRRP_ ENST00000406172.6_1_22:19708391-19710534:+|nuORF 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87143.5 NaN 1346 1470 2815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2820 24.899 NaN 77407 35 0 23207 0.327 + 25340 SDQVYRQR 8 32 526.267329926753 1050.5201069203058 2 526.7789916992188 MULTI HCD FTMS 0 0 0 2819 4044.60107421875 0.7979508069199883 3 -0.03958892822265625 1 Unmodified _SDQVYRQR_ ENSG00000180176|ENST00000352909|TH;ENST00000381168.7_1_11:2187868-2190906:-|nuORF;ENST00000469226.1_1_11:2189094-2189913:-|nuORF;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-5|TH;nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101|TH 4.75600775471527 0.5349361699807423 1 M 1 8 10.797 0 0 1.0278 0 0 298.1279965934453 618.3121557497373 916.4401523431825 0 0 0 0 0 0.3807196863200844 0 0 0 M 1.0278 - 5 + NaN NaN 91386.5 NaN 1347 1471 2819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2821 24.903 NaN 43563 35 0 10551 0.261 + 30929 VRIVPLKI 8 20 469.3295517225489 936.6445505118978 2 469.3284912109375 MULTI HCD FTMS 0 0 0 2819 13276.80078125 0.6441208821197314 -3 0.033168792724609375 2 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96481.9 NaN 1348 1471 2819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2823 24.909 NaN 71453 35 0 10036 0.327 + 4065 ESGPSIVHR 9 31 491.25914955881217 980.5037461844244 2 491.25897216796875 MULTI HCD FTMS 0 0 0 2822 24705.71484375 0.01077272842848623 84 -1.0686397552490234 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 3.5964929083625545 0.32375295897743744 1 V[RH] 3 6 10.458 0 0 1.0666 0 0 570.2653008545358 0 570.2653008545358 0 7.3586311141647816 0 0 0 0 0 0 0 + V[RH] 1.0666 + + 9 + NaN NaN 87081.1 NaN 1349 1472 2822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2824 24.913 NaN 33961 35 0 6181.4 0.261 + 12377 KPATKEAEF 9 26 510.77171710690226 1019.5288812806045 2 510.77142333984375 MULTI HCD FTMS 0 0 0 2822 16241.2177734375 0.37140441772539173 8 -0.11469841003417969 2 Unmodified _KPATKEAEF_ ENSG00000169515|ENST00000307522|CCDC8 3.2813086475875832 0.32614229037259 1 KP 2 7 20.969 0 0 2.0567 0 0 0 791.3532198541624 791.3532198541624 20.969100130080562 0 0 0 0 0 0 0 0 + KP 2.0567 + + 1 + NaN NaN 83800.5 NaN 1350 1472 2822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2825 24.917 NaN 15568 35 0 4730.3 0.261 + -1 MLVLEYHCP 9 16 602.2804664540786 1202.546379974957 2 602.2804565429688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MLVLEYHC(Carbamidomethyl (C))P_ REV__nc|ENSG00000158793|Q86X76-3|NIT1 0.6014990680409731 0.3464572424761564 1 M 1 -1 6.9897 0 0 0.58124 0 0 561.7736271446821 506.7076510065063 1068.4812781511885 0 0 0 0 0 0 0 0 0 M 0.58124 + + 1 + NaN NaN 101705.8 NaN 1351 1472 2822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2826 24.92 NaN 30995 35 0 9463.4 0.262 + -1 PILLMMICC 9 20 547.2673709619884 NaN 0 547.2672119140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _PILLMMIC(Carbamidomethyl (C))C_ REV__ENSG00000187701|ENST00000460972|OR2T27;REV__nc|ENSG00000227152|P0C7T2|OR2T7 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83134.9 NaN 1352 1472 2822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2828 24.925 NaN 191580 35 0 24188 0.327 + 27792 TAVKNDYEM 9 34 543.7423522136379 1085.4701514940757 2 543.7422485351562 MULTI HCD FTMS 0 0 0 2827 133974.1875 0.5710996158721684 12 -0.16043472290039062 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 80.6760300276096 0.005633624786464751 1 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 75.78 0 0 6.9813 6.9813 95.155 0 0 0 66.3161404875364 16.478174818886373 16.478174818886373 75.78009063929706 0 2.4291746928241125 0 1.2614393726401687 0 + + [TA]VKNDYE{M(Oxidation (M))|F} 6.9813 + + 41 + NaN NaN 98543 NaN 1353 1473 2827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2829 24.93 NaN 19107 35 0 3703.7 0.261 -1 PCLLFRVHV 9 14 570.8218444572238 NaN 0 570.8214721679688 PEAK HCD FTMS 0 0 0 2827 7258.49169921875 0.5785350049811468 6 -0.08491134643554688 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))LLFRVHV_ ENST00000576225.5_1_17:79058928-79084738:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86813 NaN 1354 1473 2827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2830 24.933 NaN 45445 35 0 10581 0.262 + 26521 SVLEDEHQ 8 32 478.7192783482324 NaN 0 478.72003173828125 PEAK HCD FTMS 0 0 0 2827 4532.81982421875 0.756785476707558 1 -0.013355255126953125 3 Unmodified _SVLEDEHQ_ ENSG00000167972|ENST00000301732|ABCA3 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88622.8 NaN 1355 1473 2827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2832 24.939 NaN 544590 35 0 80831 0.327 + 28677 TSETPQPPR 9 54 506.75663884806306 1011.4987247629261 2 506.75640869140625 MULTI HCD FTMS 0 0 0 2831 250067.40625 0.9088783818057067 -2 0.02968597412109375 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 60.07390631473393 0.0174780869009295 1 {[MG]|[TS]}ETY 5 5 34.481 0 0 3.4089 0 0 0 427.2297177651324 427.2297177651324 16.52249673628745 0 0 0 0 1.5 0 0.805462187404089 0 {[MG]|[TS]}ETY 3.4089 - 132 NaN NaN 170604.1 NaN 1356 1474 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2833 24.943 NaN 59869 35 0 7024.8 0.261 + 26077 SPGGVYATR 9 33 454.2351239951815 906.455695057163 2 454.2350158691406 MULTI HCD FTMS 0 0 0 2831 30199.177734375 0.4238918456388976 -7 0.09548759460449219 2 Unmodified _SPGGVYATR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 18.373094154950223 0.20161688160436167 1 SPGRY 5 5 47.206 0 0 5.2078 0 0 0 343.1743563287719 343.1743563287719 44.10728139283883 0 0 0 0 0.9247425010840047 0 0 0 SPGRY 5.2078 - 15 + NaN NaN 81670.6 NaN 1357 1474 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2834 24.947 NaN 85408 35 0 24106 0.261 + -1 TTSKGCISY 9 33 508.7395222764758 1015.4644916197516 2 509.7425842285156 MULTI HCD FTMS 0 0 0 2831 11556.462890625 0.5610329194944729 -9 0.117889404296875 3 Carbamidomethyl (C) _TTSKGC(Carbamidomethyl (C))ISY_ REV__ENSG00000198739|ENST00000361320|LRRTM3;REV__LRRTM3|p.K356M|1|0.42|ENSG00000198739|chr10:66927983-66927983|A/T|missense_variant;REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3 1.6526216038709556 0.33848895094777925 1 D{[{M(Oxidation (M))|F}H]|[RQ]} 3 -1 10.458 0 0 1.0298 0 0 598.3141346662125 0 598.3141346662125 0 10.45757490560675 0 0 0 0 0 0 0 D{[{M(Oxidation (M))|F}H]|[RQ]} 1.0298 - 7 NaN NaN 91388.9 NaN 1358 1474 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2835 24.95 NaN 48754 35 0 10460 0.261 -1 EMRVGQMSM 9 26 550.7324139892398 NaN 0 550.7310791015625 PEAK HCD FTMS 0 0 0 2831 10039.4541015625 0.5184239055504797 11 -0.1470794677734375 4 2 Oxidation (M) _EM(Oxidation (M))RVGQMSM(Oxidation (M))_ ENST00000053468.3_1_6:42175935-42176007:-|nuORF 1.4819007175156935 0.28806575819904134 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86551.6 NaN 1359 1474 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2837 24.955 NaN 42028 35 0 8420 0.411 + 5027 FDESMAMS 8 37 459.1719822091014 NaN 0 459.1719055175781 PEAK HCD FTMS 0 0 0 2836 24474.916015625 0.7417153077680432 63 -0.7903671264648438 1 Unmodified _FDESMAMS_ REV__ENSG00000081479|ENST00000649046|LRP2 4.75600775471527 0.38822285293237185 1 AA 2 -1 10.969 0 0 1.1971 0 0 164.03431978754026 607.1997774713499 771.2340972588902 0 0 0 0 0 0 0 0 0 AA 1.1971 - 7 + NaN NaN 97273.8 NaN 1360 1475 2836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2839 24.964 NaN 1058000 35 0 162620 0.327 + 3071 EAGPSIVHR 9 69 483.26188427572185 964.5092156182437 2 483.2616271972656 MULTI HCD FTMS 0 0 0 2838 641031.9375 0.9752797537503277 -2 0.024883270263671875 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 86.33184430468982 0.004622086694044132 1 EAGPS{I|L}VHR 9 0 + 91.609 0 0 9.498 9.498 95.017 0 0 0 65.98111424532155 19.365429718850734 19.365429718850734 12.230749808046326 0 1.1861818737241734 0 0.6505149978319906 0.28872548999643577 + + EAGPS{I|L}VHR;EQPS{I|L}VHR;[{I|L}P]{[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]}HR 9.498;8.2299;1.621 +;-;- + 464 + NaN NaN 265450.5 NaN 1361 1476 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2840 24.968 NaN 137450 35 0 24084 0.261 -1 RYMPPAHRNF 10 46 435.54865661797754 1303.6241404541327 3 435.5483703613281 MULTI HCD FTMS 0 0 0 2838 45773.15625 0.41610863804654014 55 -0.6993236541748047 2 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 5.783430956126388 0.4446910851847804 1 D 1 -1 1.5938 0 0 0.12226 0 0 868.751106862139 316.8315523736938 1185.5826592358328 0 0 0 0 0 0 0 0 0 D 0.12226 - 1 + NaN NaN 101671 NaN 1362 1476 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2841 24.971 NaN 52870 35 0 13285 0.261 + 27945 TERPRDGR 8 26 493.7610673573425 985.507581781485 2 493.7481689453125 MULTI HCD FTMS 0 0 0 2838 4805.884765625 0.46563530801198466 -9 0.12037086486816406 3 Unmodified _TERPRDGR_ ENST00000252329.3_1_7:1610113-1610329:-|nuORF 4.75600775471527 0.5349361699807423 1 V{[NV]|[RG]} 3 6 7.4473 0 0 0.75568 0 0 655.3197928040317 0 655.3197928040317 0 0.45757490560674974 0 0 0 0 0 0 0 V{[NV]|[RG]} 0.75568 - 6 NaN NaN 92847 NaN 1363 1476 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2842 24.975 NaN 65323 35 0 8703.2 0.262 + -1 RRRRQWVKWPM 11 34 404.47830507453256 1613.8841144317303 4 404.4784240722656 MULTI HCD FTMS 0 0 0 2838 9502.2666015625 0.7101330379043812 -2 0.024883270263671875 4 Oxidation (M) _RRRRQWVKWPM(Oxidation (M))_ REV__ENST00000509200.5_1_17:47574227-47574383:+|nuORF 0 0.41892066650488113 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}E 4 -1 16.198 0 0 1.0037 0 0 0 1140.622979548147 1140.622979548147 16.197887582883936 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}E 1.0037 - 4 + NaN NaN 86302.9 NaN 1364 1476 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2843 24.978 NaN 14927 35 0 4709.2 0.261 + -1 CYRNWRTL 8 12 584.7890406412724 NaN 0 584.7891235351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRNWRTL_ REV__ENSG00000048342|ENST00000424120|CC2D2A;REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A 0.6903765706972694 0.38822285293237185 1 {I|L} 1 -1 5.4846 0 0 0.46974 0 0 297.723942022976 753.7399386041624 1051.4638806271385 0 0 0 0 0 0 0 0 0 {I|L} 0.46974 + + 1 + NaN NaN 95427.3 NaN 1365 1476 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2845 24.984 NaN 220230 35 0 72345 0.327 + 8184 GQDLCLPSPS 10 42 508.7395222764758 1015.4644916197516 2 508.7392578125 MULTI HCD FTMS 0 0 0 2844 87883.75 0.7550447310065218 12 -0.15713882446289062 1 Unmodified _GQDLCLPSPS_ REV__ENST00000328916.7_1_12:7167858-7168176:+|nuORF 17.11289562659939 0.35104376501799556 1 {[QG]|[NA]}D 3 -1 35.234 0 0 3.4697 0 0 0 712.3352246121922 712.3352246121922 21.281446971601312 0 0 0 0 0.8494850021680094 1.3979400086720375 0 0.3807196863200844 {[QG]|[NA]}D 3.4697 + + 41 NaN NaN 125234.5 NaN 1366 1477 2844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2846 24.988 NaN 59504 35 0 10757 0.261 + 8147 GPEALSTVNV 10 25 493.7610673573425 985.507581781485 2 493.7481994628906 MULTI HCD FTMS 0 0 0 2844 5141.119140625 0.49811568760323977 -8 0.11038780212402344 2 Unmodified _GPEALSTVNV_ REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF 3.2813086475875832 0.45793521633868084 1 TV{[NV]|[RG]} 4 -1 11.682 0 0 1.1854 0 0 554.2681141584 0 554.2681141584 0 11.682437647924218 0 0 0 0 0 0 0 TV{[NV]|[RG]} 1.1854 + + 3 NaN NaN 90763.8 NaN 1367 1477 2844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2848 24.994 NaN 2408700 35 0 214880 0.327 + 9528 HRDYETATL 9 97 553.2672343400287 1104.5199157468574 2 553.2675170898438 MULTI HCD FTMS 0 0 0 2847 1325266 0.26850273518980394 13 -0.16825294494628906 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 47.748688679222035 0.03472022231463587 1 HPVSDHEAT{I|L} 10 5 + 81.174 0 0 7.3492 7.3492 85.986 0 0 0 27.381003974010973 8.229459007977198 8.229459007977198 1.0307688054491848 0 3.055462187404089 0 2.360924374808178 0 HPVSDHEAT{I|L};[{I|L}T]AEEEEAT{I|L};[TA]{I|L}EEEEAT{I|L};[TA]E{I|L}EEEAT{I|L};{[YC]|[HE]}[TP]AHEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTHDSTT{I|L};{[YC]|[HE]}[TP]AEHAT{I|L};{[YC]|[HE]}[TP]AEAHT{I|L};[{I|L}T]AE{[ET]|[MV]}EPC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{[ES]|[DT]|[{I|L}C]}PHT{I|L} 7.3492;7.2559;6.5342;6.3182;6.2593;6.0023;5.0132;4.0114;3.9026;3.1915 -;-;-;-;-;-;-;-;-;- 8138 + NaN NaN 453335.1 NaN 1368 1478 2847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2849 24.998 NaN 64820 35 0 9751.6 0.261 -1 IQHEKETM 8 23 516.2451184236456 1030.4756839140912 2 516.2452392578125 MULTI HCD FTMS 0 0 0 2847 26420.59375 0.553182886027349 12 -0.15501976013183594 2 Oxidation (M) _IQHEKETM(Oxidation (M))_ ENST00000510337.1_1_5:122971848-122972142:+|nuORF 15.847184025352803 0.47719562709667024 1 E[{M(Oxidation (M))|F}T] 3 -1 24.705 0 0 2.3974 0 0 635.3399550095975 0 635.3399550095975 0 24.704999916446795 0 0 0 1 0 0.4247425010840047 0 E[{M(Oxidation (M))|F}T] 2.3974 + + 5 + NaN NaN 89230.8 NaN 1369 1478 2847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2850 25.002 NaN 18179 35 0 5078.2 0.261 -1 0 17 624.2357762413516 623.2284997747515 1 624.2360229492188 MULTI HCD FTMS 0 0 0 2847 5243.81640625 0.4857739934719518 9 -0.12877655029296875 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 79682.5 NaN 1370 1478 2847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2851 25.005 NaN 11872 35 0 2058.8 0.261 + -1 VYCCNSLVIL 10 13 620.8042030584573 NaN 0 621.2739868164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))C(Carbamidomethyl (C))NSLVIL_ REV__EXOC2|p.L721V|1|0.07|ENSG00000112685|chr6:549252-549252|G/C|missense_variant 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84562.4 NaN 1371 1478 2847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2853 25.01 NaN 22058 35 0 5164 0.327 -1 0 18 574.7612289398334 1147.5079049464666 2 574.7610473632812 MULTI HCD FTMS 0 0 0 2852 12795.2724609375 0.32446086047376627 22 -0.2694053649902344 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88116.7 NaN 1372 1479 2852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2854 25.015 NaN 18863 35 0 4745.6 0.261 + -1 NSCAKGKKTK 10 13 561.3064193299715 NaN 0 561.3067016601562 PEAK HCD FTMS 0 0 0 2852 3226.8583984375 0.3585133692392488 -2 0.02672576904296875 2 Carbamidomethyl (C) _NSC(Carbamidomethyl (C))AKGKKTK_ REV__tr|U7SSQ7|U7SSQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01346PE=4SV=1 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106497.9 NaN 1373 1479 2852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2855 25.018 NaN 24544 35 0 9571.7 0.261 + 27583 TAEDQTDAAA 10 14 496.7119115414668 NaN 0 496.7119140625 PEAK HCD FTMS 0 0 0 2852 2174.27783203125 0.39987580551304985 -6 0.08491134643554688 3 Unmodified _TAEDQTDAAA_ REV__ENSG00000107874|ENST00000369937|CUEDC2 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85059.9 NaN 1374 1479 2852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2857 25.024 NaN 85248 35 0 10284 0.327 + -1 TCFISKEM 8 31 487.7200812857982 973.4256096383964 2 487.7196350097656 MULTI HCD FTMS 0 0 0 2856 7251.06005859375 0.10554024469703689 13 -0.16249656677246094 1 Oxidation (M) _TCFISKEM(Oxidation (M))_ REV__ENSG00000164113|ENST00000296513|ADAD1;REV__nc|ENSG00000164113|Q96M93-2|ADAD1;REV__nc|ENSG00000164113|Q96M93-3|ADAD1 4.75600775471527 0.5349361699807423 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 120750 NaN 1375 1480 2856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2858 25.028 NaN 56343 35 0 22704 0.261 + 32611 WLIEYLLC 8 15 526.7779286809637 1051.5413044287272 2 526.7783203125 MULTI HCD FTMS 0 0 0 2856 13785.88671875 0.5100691404070494 13 -0.16249656677246094 2 Unmodified _WLIEYLLC_ ENST00000282003.6_1_13:79188644-79188734:-|nuORF 0.6903765706972694 0.5409681170271811 1 [W{I|L}]M 3 6 10.458 0 0 0.9945 0 0 0 618.3116131694193 618.3116131694193 10.45757490560675 0 0 0 0 0 0 0 0 [W{I|L}]M 0.9945 - 1 + NaN NaN 97724.8 NaN 1376 1480 2856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2859 25.032 NaN 31608 35 0 11444 0.261 -1 CNCEILYF 8 21 559.7366385408204 NaN 0 559.736572265625 PEAK HCD FTMS 0 0 0 2856 3684.78173828125 0.3992234053167412 7 -0.09874534606933594 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))NC(Carbamidomethyl (C))EILYF_ ENSG00000185245|ENST00000329125|GP1BA;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;GP1BA|p.R233H|1|0.33|ENSG00000185245|chr17:4933302-4933302|G/A|missense_variant 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82731.9 NaN 1377 1480 2856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2861 25.037 NaN 128950 35 0 17553 0.327 + 27793 TAVKNDYEM 9 35 543.7423522136379 1085.4701514940757 2 543.7421875 MULTI HCD FTMS 0 0 0 2860 98381.578125 0.4193769152441042 20 -0.24250221252441406 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 63.227496030279354 0.01306643085373406 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 76.717 0 0 7.0676 7.0676 95.34 0 0 0 7.147642715192504 14.572034164243561 7.147642715192504 76.7171311638593 0 2.6989700043360187 0 1.2614393726401687 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 7.0676 + + 55 + NaN NaN 101501.4 NaN 1378 1481 2860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2862 25.042 NaN 60480 35 0 8393.7 0.261 + 21887 QDEILAHR 8 24 491.25914955881217 980.5037461844244 2 491.2587890625 MULTI HCD FTMS 0 0 0 2860 25054.6484375 0.010924878118095208 93 -1.1839618682861328 2 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 4.75600775471527 0.5349361699807423 1 VHR 3 6 26.198 0 0 2.6719 0 0 570.2651120064932 0 570.2651120064932 0 19.20818753952375 0 0 0 0 0 0 0 VHR 2.6719 - 12 + NaN NaN 108615.2 NaN 1379 1481 2860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2863 25.045 NaN 29060 35 0 11695 0.261 + 14857 LKHKLKTPR 9 16 560.8712154705606 NaN 0 560.8707275390625 PEAK HCD FTMS 0 0 0 2860 7003.09130859375 0.5813423095724302 17 -0.2058238983154297 3 Unmodified _LKHKLKTPR_ ENSG00000127666|ENST00000248244|TICAM1 0.45834013312273997 0.29302578994899664 1 C 1 9 6.9897 0 0 0.62423 0 0 866.779786432529 146.91004358463127 1013.6898300171603 0 0 0 0 0 0 0 0 0 C 0.62423 - 1 + NaN NaN 80130.1 NaN 1380 1481 2860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2865 25.051 NaN 132070 35 0 17340 0.327 + 27794 TAVKNDYEM 9 31 543.7423522136379 1085.4701514940757 2 543.7420654296875 MULTI HCD FTMS 0 0 0 2864 95886.3984375 0.4087405666484967 21 -0.24724388122558594 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 47.7319792270244 0.034743597693959835 1 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 71.22 0 0 6.5612 6.5612 94.295 0 0 0 64.23061874357607 16.478174818886373 16.478174818886373 71.22031878693626 0 2.353917193908117 0 0.8807196863200843 0 + + [TA]VKNDYE{M(Oxidation (M))|F} 6.5612 + + 34 + NaN NaN 113545.6 NaN 1381 1482 2864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2866 25.055 NaN 783930 35 0 71841 0.261 + 31106 VTKRYRALT 9 76 554.3346349519024 1106.6547169706048 2 554.3347778320312 MULTI HCD FTMS 0 0 0 2864 14931.7392578125 0.6323564614078999 2 -0.026941299438476562 2 Unmodified _VTKRYRALT_ REV__nc|ENSG00000002079|Q9H6N6|MYH16 4.3292370932331545 0.3181982124262546 1 TAEH 4 -1 28.175 0 0 2.546 0 0 132.22681710573335 533.2172335260374 665.4440506317708 0 0 0 0 0 0 0 1.4247425010840047 0 TAEH 2.546 - 336 + NaN NaN 203685.6 NaN 1382 1482 2864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2867 25.059 NaN 18049 35 0 4708.5 0.261 + 32529 WHGKEQGQSF 10 18 602.2804664540786 1202.546379974957 2 602.280029296875 MULTI HCD FTMS 0 0 0 2864 7448.0703125 0.503019174000636 4 -0.05841064453125 3 Unmodified _WHGKEQGQSF_ REV__ENSG00000166348|ENST00000687698|USP54;REV__nc|ENSG00000166348|Q70EL1-10|USP54;REV__nc|ENSG00000166348|Q70EL1-7|USP54;REV__nc|ENSG00000166348|Q70EL1-8|USP54;REV__nc|ENSG00000166348|Q70EL1-9|USP54 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92410.2 NaN 1383 1482 2864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2869 25.064 NaN 484180 35 0 70136 0.327 + 28678 TSETPQPPR 9 58 506.75663884806306 1011.4987247629261 2 506.75653076171875 MULTI HCD FTMS 0 0 0 2868 219709.546875 0.7985417229120201 7 -0.08464241027832031 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 75.76082778847304 0.0072241045649327805 1 {[MG]|[TS]}ET[QP]PPR 9 0 {[MG]|[TS]} + + 38.408 9.036 4.8043 3.7971 3.7971 59.886 0 0 0 0 20.448719476111215 0 0 0 1.6747425010840047 0 0.4247425010840047 0 + + {[MG]|[TS]}ET[QP]PPR 3.7971 + + 108 + NaN NaN 150812.5 NaN 1384 1483 2868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2870 25.069 NaN 23001 35 0 3356.7 0.261 -1 YCYMDICKYY 10 17 479.8552279268557 NaN 0 479.85516357421875 PEAK HCD FTMS 0 0 0 2868 1391.875 0.326162897002431 -5 0.07037734985351562 2 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))YM(Oxidation (M))DICKYY_ ENST00000475465.1_1_X:77158242-77158278:+|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79173.5 NaN 1385 1483 2868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2871 25.072 NaN 31868 35 0 9153.3 0.261 -1 LVLILAPPI 9 18 495.83345941003523 NaN 0 496.2018127441406 PEAK HCD FTMS 0 0 0 2868 2087.3740234375 0.41852659799539194 2 -0.02172088623046875 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LVLILAPPI_ ENST00000285667.3_1_21:15753723-15753789:-|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85555.1 NaN 1386 1483 2868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2873 25.078 NaN 96616 35 0 12079 0.411 + 26078 SPGGVYATR 9 47 454.2351239951815 906.455695057163 2 454.2349853515625 MULTI HCD FTMS 0 0 0 2872 48087.640625 0.6749838991062564 3 -0.04491615295410156 1 Unmodified _SPGGVYATR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 53.31671820480216 0.026930930319421505 1 SPGGVYA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 92.585 0 0 10.214 10.214 95.131 0 0 0 91.47608139917317 4.762036441594191 4.762036441594191 10.72559982972642 0 2.274227503252014 1.6989700043360187 0 0 + + SPGGVYA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};SPGRYA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};SPNVYA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10.214;9.0307;9.0307 +;-;- + 91 + NaN NaN 106691.8 NaN 1387 1484 2872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2875 25.086 NaN 573160 35 0 89917 0.327 + 3072 EAGPSIVHR 9 62 483.26188427572185 964.5092156182437 2 483.2616271972656 MULTI HCD FTMS 0 0 0 2874 323621.53125 0.49236474634433325 7 -0.08388900756835938 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 79.59630418116434 0.005983006570063981 1 EAGPS{I|L}VHR 9 0 + 86.252 0 0 8.9426 8.9426 93.771 0 0 0 65.1059905927697 19.730749808046326 19.730749808046326 9.730749808046326 0 1.0356668758921828 0 0.7059771852360797 0.3252574989159953 + + EAGPS{I|L}VHR;EQPS{I|L}VHR 8.9426;7.9337 +;- + 322 + NaN NaN 186060.8 NaN 1388 1485 2874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2876 25.09 NaN 76018 35 0 7689.9 0.261 + 9190 HPLHNDPNL 9 33 528.764767141177 1055.514981349154 2 528.7645874023438 MULTI HCD FTMS 0 0 0 2874 32273.2421875 0.1699784618580178 -11 0.1470794677734375 2 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 21.536976647645854 0.1742816388551942 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DNH 6 4 26.655 0 0 2.5254 0 0 0 339.1675393040609 339.1675393040609 19.665762445130497 0 0 0 0 1.274227503252014 0 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DNH 2.5254 - 29 NaN NaN 87945.8 NaN 1389 1485 2874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2877 25.094 NaN 137790 35 0 24893 0.262 -1 RYMPPAHRNF 10 40 435.54865661797754 1303.6241404541327 3 435.5483093261719 MULTI HCD FTMS 0 0 0 2874 38348.1796875 0.34861062964889206 64 -0.8021755218505859 3 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 3.5870582119611467 0.4563168352879256 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103535.7 NaN 1390 1485 2874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2878 25.097 NaN 43439 35 0 8173.6 0.261 -1 ADEFMMAA 8 32 459.1719822091014 NaN 0 459.1719970703125 PEAK HCD FTMS 0 0 0 2874 26033.0625 0.7889351265599887 73 -0.9184455871582031 4 2 Oxidation (M) _ADEFM(Oxidation (M))M(Oxidation (M))AA_ tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 0.7936320650641473 0.38822285293237185 1 A 1 -1 0.9691 0 0 0.10576 0 0 458.530596643009 383.7374361627563 842.2680328057653 0 0 0 0 0 0 0 0 0 A 0.10576 + + 1 + NaN NaN 100749.4 NaN 1391 1485 2874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2879 25.1 NaN 41264 35 0 5679.1 0.261 + -1 AGGPEEEPEM 10 23 531.2081986195946 1060.401844305989 2 531.2078247070312 MULTI HCD FTMS 0 0 0 2874 13639.0908203125 0.38165794485996374 -13 0.17676544189453125 5 Oxidation (M) _AGGPEEEPEM(Oxidation (M))_ REV__ENSG00000122824|ENST00000356450|NUDT10;REV__ENSG00000173598|ENST00000415493|NUDT4;REV__ENSG00000177144|ENST00000322209|NUDT4B;REV__ENSG00000196368|ENST00000375992|NUDT11;REV__nc|ENSG00000173598|Q9NZJ9-3|NUDT4 9.38312468134398 0.42334543440173333 1 E[EP]{M(Oxidation (M))|F} 4 -1 21.95 0 0 2.07 0 0 540.2180042951187 0 540.2180042951187 0 21.95046257204389 0 0 0 0.9247425010840047 0 0 0 E[EP]{M(Oxidation (M))|F} 2.07 + + 4 NaN NaN 102646.4 NaN 1392 1485 2874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2880 25.104 NaN 46949 35 0 7435.7 0.261 -1 0 26 469.3286613463225 468.32138487972253 1 469.3283386230469 MULTI HCD FTMS 0 0 0 2874 9037.642578125 0.4747155773029785 -6 0.07552337646484375 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90278.4 NaN 1393 1485 2874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2882 25.109 NaN 41368 35 0 6320.8 0.327 + -1 AGFFMAGSM 9 28 475.69202978679186 NaN 0 475.6919250488281 PEAK HCD FTMS 0 0 0 2881 5017.615234375 0.10283913987885006 19 -0.20873260498046875 1 2 Oxidation (M) _AGFFM(Oxidation (M))AGSM(Oxidation (M))_ REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 2.0597508629832335 0.2852655770354268 1 S 1 -1 6.9897 0 0 0.73625 0 0 165.04694912260874 694.2739351861936 859.3208843088023 0 0 0 0 0 0 0 0 0 S 0.73625 + + 2 + NaN NaN 100455.5 NaN 1394 1486 2881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2883 25.114 NaN 100090 35 0 11986 0.261 + 24593 RYLPHEELF 9 44 401.8778357069083 NaN 0 401.8777160644531 PEAK HCD FTMS 0 0 0 2881 11548.744140625 0.1632799386838365 702 -14.070428848266602 2 Unmodified _RYLPHEELF_ ENSG00000124459|ENST00000269973|ZNF45 2.0597508629832335 0.2852655770354268 1 R 1 8 5.4846 0 0 0.68408 0 0 318.49726579682596 324.12082849674067 642.6180942935666 0 0 0 0 0 0 0 0 0 + R 0.68408 + + 3 + NaN NaN 104346 NaN 1395 1486 2881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2884 25.117 NaN 9455.8 35 0 2087.5 0.261 + 35359 YYASVNVTRE 10 10 601.2958576832917 NaN 0 601.296875 PEAK HCD FTMS 0 0 0 2881 6178.36865234375 0.7960175402815116 2 -0.023571014404296875 3 Unmodified _YYASVNVTRE_ ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;nc|ENSG00000141338|O94911-2|ABCA8 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86231 NaN 1396 1486 2881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2886 25.123 NaN 1039600 35 0 90060 0.326 + 9529 HRDYETATL 9 76 553.2672343400287 1104.5199157468574 2 553.2672729492188 MULTI HCD FTMS 0 0 0 2885 559450 0.11334619253941158 22 -0.252838134765625 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 47.748688679222035 0.03472022231463587 1 HPVSDHEAT{I|L} 10 5 + 75.834 0 0 6.8658 6.8658 86.132 0 0 0 15.54235956215814 12.20931139056114 12.20931139056114 3.1690156004425916 0 2.548455006504028 0 2.430884548956689 0 HPVSDHEAT{I|L};[{I|L}T]AEEEEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]HDSTT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMAH[TP]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMA{[CT]|[{M(Oxidation (M))|F}G]}PH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{[ES]|[DT]|[{I|L}C]}PHT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMA{[CT]|[{M(Oxidation (M))|F}G]}P{I|L}H;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMA{[MS]|[{M(Oxidation (M))|F}A]}VPH;[{I|L}T]{[{M(Oxidation (M))|F}C]|[YS]}WWH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMA{[CT]|[{M(Oxidation (M))|F}G]}{I|L}PH 6.8658;6.5789;5.3734;3.9982;3.1569;2.4795;2.3439;2.3376;2.2946;2.2874 -;-;-;-;-;-;-;-;-;- 3199 + NaN NaN 255780 NaN 1397 1487 2885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2887 25.127 NaN 18146 35 0 4899 0.261 + -1 YWMPIIWL 8 11 569.2936887561287 1136.5728245790574 2 569.29345703125 MULTI HCD FTMS 0 0 0 2885 7247.001953125 0.22376691836787616 -9 0.12877655029296875 2 Oxidation (M) _YWM(Oxidation (M))PIIWL_ REV__nc|ENSG00000138347|Q86TC9-2|MYPN 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98158.6 NaN 1398 1487 2885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2889 25.133 NaN 14143 35 0 2119.8 0.411 -1 FVNDDRHVM 9 23 574.7612289398334 1147.5079049464666 2 574.7611083984375 MULTI HCD FTMS 0 0 0 2888 9438.39453125 0.23933758506896896 31 -0.36684608459472656 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 79861.6 NaN 1399 1488 2888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2891 25.141 NaN 42821 35 0 4237.6 0.411 + 26461 STSETPQPPR 10 38 550.2728517008293 1098.5311504684585 2 550.2730712890625 MULTI HCD FTMS 0 0 0 2890 7643.34521484375 0.5341155801287454 -18 0.24155807495117188 1 Unmodified _STSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 7.608950283845883 0.4350283211712914 1 T 1 9 7.232 0 0 0.65833 0 0 404.15695720849595 590.3060243202781 994.462981528774 0 0 0 0 0 0.3252574989159953 0 0 0 + T 0.65833 + + 5 + NaN NaN 104309.8 NaN 1400 1489 2890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2893 25.149 NaN 47559 35 0 9533.4 0.327 + 8294 GWPSRDQE 8 22 487.7200812857982 973.4256096383964 2 487.7193603515625 MULTI HCD FTMS 0 0 0 2892 8523.4658203125 0.12406029753904305 23 -0.2823448181152344 1 Unmodified _GWPSRDQE_ ENSG00000110665|ENST00000381153|C11orf21 2.577480529830294 0.5381683276125971 1 A 1 8 1.5938 0 0 0.16373 0 0 564.2489261440589 335.10798059635005 899.3569067404089 0 0 0 0 0 0 0 0 0 A 0.16373 - 4 + NaN NaN 89832.9 NaN 1401 1490 2892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2894 25.153 NaN 23185 35 0 4395.2 0.261 + -1 TCTVMLLM 8 17 500.7294062611352 999.4442595890704 2 500.728271484375 MULTI HCD FTMS 0 0 0 2892 3373.71142578125 0.3466636582910801 5 -0.056018829345703125 2 Carbamidomethyl (C),2 Oxidation (M) _TC(Carbamidomethyl (C))TVM(Oxidation (M))LLM(Oxidation (M))_ REV__ENSG00000124493|ENST00000538487|GRM4;REV__nc|ENSG00000124493|Q14833-2|GRM4;REV__nc|ENSG00000124493|Q14833-3|GRM4;REV__nc|ENSG00000124493|Q14833-4|GRM4;REV__nc|ENSG00000124493|Q14833-5|GRM4 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85325.8 NaN 1402 1490 2892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2895 25.157 NaN 14333 35 0 4300.6 0.261 -1 MNIIRENKD 9 13 587.7978515625 NaN 0 587.7978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MNIIRENKD_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88219.9 NaN 1403 1490 2892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2898 25.17 NaN 95926 35 0 13470 0.327 + 27795 TAVKNDYEM 9 34 543.7423522136379 1085.4701514940757 2 543.741943359375 MULTI HCD FTMS 0 0 0 2897 67866.046875 0.2892965729019635 31 -0.3874683380126953 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 55.23464941255904 0.024247875903973527 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 67.202 0 0 6.191 6.191 91.744 0 0 0 5.31234684152075 5.31234684152075 5.31234684152075 24.291746928241125 0 2.7302046884880937 0 0.8807196863200843 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F};[TA]V{[QS]|[NT]}AAYE{M(Oxidation (M))|F} 6.191;3.9531 +;- + 66 + NaN NaN 115264.1 NaN 1404 1492 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2899 25.174 NaN 80520 35 0 12084 0.261 -1 STMSTNGIPR 10 31 540.2612129049423 1078.5078728766846 2 540.2611083984375 MULTI HCD FTMS 0 0 0 2897 21953.59765625 0.27431426327315667 -15 0.18613815307617188 2 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 27.223235318498237 0.2564750587861972 1 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}PR 10 -1 + 41.655 0 0 3.8623 3.8623 83.816 0 0 0 41.1709124234504 16.532125137753436 16.532125137753436 9.164539485499247 0 0.5 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}PR;{[MG]|[TS]}{M(Oxidation (M))|F}STGG{[VA]|[{I|L}G]}PR 3.8623;3.0126 +;- + 35 + NaN NaN 113536.1 NaN 1405 1492 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2900 25.177 NaN 25501 35 0 5149 0.261 + 2424 DPSFDDDWE 9 21 563.2015890093004 1124.3886250854007 2 564.2026977539062 MULTI HCD FTMS 0 0 0 2897 1649.33056640625 0.15256939322908103 -6 0.060657501220703125 3 Unmodified _DPSFDDDWE_ REV__ENSG00000164715|ENST00000297293|LMTK2 1.844237919475145 0.33703635659052655 1 D[WE] 3 -1 8.9524 0 0 0.7962 0 0 676.2264679582507 0 676.2264679582507 0 1.962724883926656 0 0 0 0 0 0 0 D[WE] 0.7962 + + 7 + NaN NaN 96286.5 NaN 1406 1492 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2901 25.181 NaN 33712 35 0 10737 0.261 + -1 ACMWLQVW 8 22 547.2490286734154 NaN 0 547.2496948242188 PEAK HCD FTMS 0 0 0 2897 2116.04443359375 0.33510940860830346 2 -0.026668548583984375 4 Carbamidomethyl (C) _AC(Carbamidomethyl (C))MWLQVW_ REV__ENST00000343638.9_1_17:42283687-42283852:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98611.6 NaN 1407 1492 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2903 25.186 NaN 68659 35 0 10388 0.327 + 3104 EALEQVHR 8 28 491.25914955881217 980.5037461844244 2 491.2590637207031 MULTI HCD FTMS 0 0 0 2902 26182.984375 0.01141687993660822 105 -1.288848876953125 1 Unmodified _EALEQVHR_ REV__ENSG00000100241|ENST00000380817|SBF1;REV__nc|ENSG00000100241|O95248-4|SBF1;REV__nc|ENSG00000100241|O95248|SBF1 7.910154910731844 0.5302565402355366 1 VHR 3 -1 19.922 0 0 2.0318 0 0 570.2651030153701 0 570.2651030153701 0 12.93182501400722 0 0 0 0 0 0 0 VHR 2.0318 + + 13 + NaN NaN 89974.6 NaN 1408 1493 2902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2904 25.191 NaN 48845 35 0 9947.4 0.261 + -1 CWGEHTYF 8 23 550.2174375420974 NaN 0 550.21728515625 PEAK HCD FTMS 0 0 0 2902 11187.71875 0.6917656259831171 33 -0.40663909912109375 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95211.5 NaN 1409 1493 2902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2906 25.196 NaN 249250 35 0 30394 0.411 + 28679 TSETPQPPR 9 72 506.75663884806306 1011.4987247629261 2 506.7564392089844 MULTI HCD FTMS 0 0 0 2905 109850.609375 0.3992557270310824 18 -0.21148300170898438 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 66.45667989310934 0.010234776021261575 1 {[MG]|[TS]}ET[QP]PPR 9 0 {[MG]|[TS]} + + 35.199 8.116 4.3152 3.4799 3.4799 59.572 0 0 0 0 17.24046640435234 0 0 0 1.6549471895720984 0 0.4247425010840047 0 + + {[MG]|[TS]}ET[QP]PPR 3.4799 + + 115 + NaN NaN 158297.3 NaN 1410 1494 2905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2908 25.205 NaN 158380 35 0 24754 0.327 + 3073 EAGPSIVHR 9 29 483.26188427572185 964.5092156182437 2 483.2616271972656 MULTI HCD FTMS 0 0 0 2907 93460.4296875 0.14219270447975896 17 -0.20310020446777344 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 15.248480904072842 0.22861284681709862 1 {[CP]|[EA]}GPS{I|L}VHR 9 0 + 52.853 0 0 5.4798 5.4798 91.959 0 0 0 39.94850021680094 16.478174818886373 16.478174818886373 52.85335007137462 0 0 0 0 0 + + {[CP]|[EA]}GPS{I|L}VHR 5.4798 + + 46 + NaN NaN 130960.5 NaN 1411 1495 2907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2909 25.209 NaN 96128 35 0 13995 0.261 -1 MKQCWAEA 8 33 491.70932852173286 981.4041041102657 2 491.7090148925781 MULTI HCD FTMS 0 0 0 2907 25546.6484375 0.8908846031298661 1 -0.016550064086914062 2 Oxidation (M) _M(Oxidation (M))KQCWAEA_ ENSG00000101890|ENST00000218006|GUCY2F 7.910154910731844 0.5302565402355366 1 EA 2 -1 24.464 0 0 2.4927 0 0 763.3129084054472 0 763.3129084054472 0 3.0372751160733458 0 0 0 0.3494850021680094 0 0 0 EA 2.4927 + + 18 NaN NaN 109263.4 NaN 1412 1495 2907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2910 25.213 NaN 28628 35 0 4608.4 0.261 + -1 VPFFILMV 8 25 512.2828245352778 1022.5510961373556 2 512.2831420898438 MULTI HCD FTMS 0 0 0 2907 1844.30322265625 0.4474628199566366 -4 0.04278564453125 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VPFFILM(Oxidation (M))V_ REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF 0 0.5419923896992614 1 V 1 -1 0.48455 0 0 0.047386 0 0 534.7494736781742 385.70090662174067 920.450380299915 0 0 0 0 0 0 0 0 0 V 0.047386 + + 1 + NaN NaN 80939.5 NaN 1413 1495 2907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2911 25.216 NaN 15375 35 0 3174.1 0.261 + 23480 RLWWMYSH 8 17 589.7809448242188 NaN 0 589.7809448242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RLWWMYSH_ REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84064.3 NaN 1414 1495 2907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2913 25.221 NaN 348490 35 0 32952 0.326 + 9191 HPLHNDPNL 9 53 528.764767141177 1055.514981349154 2 528.7646484375 MULTI HCD FTMS 0 0 0 2912 189866.65625 1 0 0 1 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 57.72198328787511 0.020768266150574023 1 HP{I|L}HNDP{[QV]|[N{I|L}]|[RA]|[KV]} 9 0 + 49.082 0 0 4.6501 4.6501 88.908 0 0 0 37.844946937742634 14.564083326475128 14.564083326475128 21.805234507957888 0 1.5924778212679485 0 0 1.2856668758921828 + + HP{I|L}HNDP{[QV]|[N{I|L}]|[RA]|[KV]};{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HNDP{[QV]|[N{I|L}]|[RA]|[KV]};[WR]DQQP{[QV]|[N{I|L}]|[RA]|[KV]};HP{I|L}DP[HN]{[QV]|[N{I|L}]|[RA]|[KV]};[WR]QQDP{[QV]|[N{I|L}]|[RA]|[KV]};[WR]DNAAP{[QV]|[N{I|L}]|[RA]|[KV]};[WR]DGGAAP{[QV]|[N{I|L}]|[RA]|[KV]};[WR]{[DS]|[MA]|[CV]|TT}{[YC]|[HE]}{[QV]|[N{I|L}]|[RA]|[KV]} 4.6501;2.5842;2.457;2.3552;2.289;2.2151;1.3427;0.24854 +;-;-;-;-;-;-;- + 365 + NaN NaN 132291.5 NaN 1415 1496 2912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2914 25.226 NaN 133120 35 0 27298 0.262 -1 RYMPPAHRNF 10 45 435.54865661797754 1303.6241404541327 3 435.5482482910156 MULTI HCD FTMS 0 0 0 2912 28972.1875 0.263376582903959 75 -0.9496631622314453 2 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 1.5922808571145555 0.4668755089467872 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 100947.6 NaN 1416 1496 2912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2915 25.229 NaN 46921 35 0 11417 0.261 + -1 PMDFSKDED 9 35 550.2174375420974 NaN 0 550.2173461914062 PEAK HCD FTMS 0 0 0 2912 6935.474609375 0.4288383576539508 36 -0.4493751525878906 3 Oxidation (M) _PM(Oxidation (M))DFSKDED_ REV__ENSG00000159625|ENST00000360716|DRC7;REV__nc|ENSG00000159625|Q8IY82-2|DRC7 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91619.1 NaN 1417 1496 2912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2917 25.235 NaN 64611 35 0 10323 0.411 + 22289 QPEGEEPEM 9 46 531.2081986195946 1060.401844305989 2 531.2080078125 MULTI HCD FTMS 0 0 0 2916 30200.609375 0.8450931707570346 -1 0.013452529907226562 1 Oxidation (M) _QPEGEEPEM(Oxidation (M))_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 43.85829265575387 0.04763305254408404 1 PE{M(Oxidation (M))|F} 3 6 40.005 0 0 3.7726 0 0 669.2607813046266 0 669.2607813046266 0 30.713337517843655 0 0 0 1 0 0.3807196863200844 0 + PE{M(Oxidation (M))|F} 3.7726 + + 41 + NaN NaN 99976.5 NaN 1418 1497 2916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2919 25.243 NaN 652170 35 0 61727 0.327 + 9530 HRDYETATL 9 71 553.2672343400287 1104.5199157468574 2 553.2672729492188 MULTI HCD FTMS 0 0 0 2918 328833.71875 0.06662266511553887 33 -0.4199237823486328 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 47.748688679222035 0.03472022231463587 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMAHEAT 9 7 65.389 0 0 5.9201 0 0 0 128.07173842003104 128.07173842003104 13.580795124172468 0 0 0 0 1.9921276860725623 0 2.1989700043360187 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMAHEAT 5.9201 - 1454 NaN NaN 182406.5 NaN 1419 1498 2918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2920 25.247 NaN 73855 35 0 7981.9 0.261 -1 FTMMRKVS 8 35 516.2543198975824 1030.4940868619647 2 516.2539672851562 MULTI HCD FTMS 0 0 0 2918 22391.259765625 0.6494794227818957 -6 0.07331466674804688 2 2 Oxidation (M) _FTM(Oxidation (M))M(Oxidation (M))RKVS_ ENST00000469156.1_1_2:200824555-200828491:+|nuORF 2.302733041254933 0.5385759549224092 1 E[{M(Oxidation (M))|F}T] 3 -1 14.705 0 0 1.427 0 0 635.3586631332522 0 635.3586631332522 0 6.913318520440797 0 0 0 0.4247425010840047 0 0 0 E[{M(Oxidation (M))|F}T] 1.427 - 22 + NaN NaN 104031.3 NaN 1420 1498 2918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2922 25.253 NaN 46741 35 0 6135.2 0.327 + 32074 VYQNHVQHL 9 30 569.2936887561287 1136.5728245790574 2 569.29345703125 MULTI HCD FTMS 0 0 0 2921 27920.119140625 0.8620942923670065 3 -0.03498268127441406 1 Unmodified _VYQNHVQHL_ ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5 10.823927491677226 0.26684000660059787 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89621.8 NaN 1421 1499 2921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2923 25.257 NaN 12563 35 0 5291.6 0.261 -1 MICMPVGGPDL 11 11 574.7612289398334 1147.5079049464666 2 574.7609252929688 MULTI HCD FTMS 0 0 0 2921 11043.8076171875 0.28004744200006243 42 -0.5432701110839844 2 Oxidation (M) _M(Oxidation (M))ICMPVGGPDL_ ENSG00000112137|ENST00000332995|PHACTR1;nc|ENSG00000112137|Q9C0D0-2|PHACTR1 1.3295316138638542 0.4130897924953357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98223.8 NaN 1422 1499 2921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2924 25.261 NaN 30706 35 0 9459.3 0.261 -1 0 18 500.7384986846513 999.4624444361026 2 500.7296142578125 MULTI HCD FTMS 0 0 0 2921 3800.806884765625 0.08582579091725806 -16 0.18884658813476562 3 NaN NaN 1 Q 1 -1 3.9794 0 0 0.39815 0 0 372.12700850035884 496.2406405084594 868.3676490088183 0 0 0 0 0 0 0 0 0 Q 0.39815 - 1 + NaN NaN 84274.2 NaN 1423 1499 2921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2926 25.266 NaN 100050 35 0 13596 0.327 + -1 QQVCQLKI 8 35 508.78110465053743 1015.5476563678749 2 508.7811279296875 MULTI HCD FTMS 0 0 0 2925 29200.724609375 0.5445032121483437 -9 0.10424423217773438 1 Carbamidomethyl (C) _QQVC(Carbamidomethyl (C))QLKI_ REV__ENST00000237853.8_1_5:95249555-95255155:-|nuORF 4.75600775471527 0.5349361699807423 1 K{I|L} 2 -1 22.959 0 0 2.2607 0 0 756.3561268537125 0 756.3561268537125 0 22.95880017344075 0 0 0 0.5 0 0 0 K{I|L} 2.2607 + + 2 NaN NaN 100831.4 NaN 1424 1500 2925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2927 25.271 NaN 38230 35 0 5636.7 0.261 -1 0 27 524.7889198698192 1047.5632868064383 2 524.7888793945312 MULTI HCD FTMS 0 0 0 2925 19875.494140625 0.46552697432098844 -4 0.04490852355957031 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83539.3 NaN 1425 1500 2925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2928 25.274 NaN 43856 35 0 9767.4 0.261 -1 0 24 469.32864488262436 468.32136841602437 1 469.3285217285156 MULTI HCD FTMS 0 0 0 2925 9611.150390625 0.3784261426319967 -64 0.8344631195068359 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 105094.6 NaN 1426 1500 2925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2930 25.28 NaN 35075 35 0 4913.5 0.411 + -1 RQLLCCGP 8 27 473.7349320689105 NaN 0 473.7348937988281 PEAK HCD FTMS 0 0 0 2929 7068.421875 0.6585521170971373 1 -0.008226394653320312 1 Carbamidomethyl (C) _RQLLCC(Carbamidomethyl (C))GP_ REV__ENST00000306645.9_1_17:80404571-80407146:-|nuORF;REV__ENST00000582608.5_1_17:80404568-80408586:-|nuORF;REV__ENST00000584024.5_1_17:80403796-80407143:-|nuORF 2.577480529830294 0.38822285293237185 1 H 1 -1 6.9897 0 0 0.73929 0 0 172.08593944272394 633.2898043268186 805.3757437695426 0 0 0 0 0 0 0 0 0 H 0.73929 - 1 + NaN NaN 103484.3 NaN 1427 1501 2929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2932 25.288 NaN 79878 35 0 9472.1 0.327 + 27796 TAVKNDYEM 9 34 543.7423522136379 1085.4701514940757 2 543.7420654296875 MULTI HCD FTMS 0 0 0 2931 64691.4921875 0.2757642127031271 41 -0.5331268310546875 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 43.981846655682396 0.04706587046877104 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 66.661 0 0 6.1412 6.1412 93.43 0 0 0 62.68114684785509 16.478174818886373 16.478174818886373 66.66054693457546 0 2.1989700043360187 0 0.8807196863200843 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 6.1412 + + 29 + NaN NaN 112364.7 NaN 1428 1502 2931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2933 25.292 NaN 52193 35 0 10674 0.261 -1 QPDEEPMDM 9 30 562.1994252385492 NaN 0 562.19970703125 PEAK HCD FTMS 0 0 0 2931 11079.8984375 0.40269304006942364 -20 0.2372875213623047 2 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 9.38312468134398 0.24977752951804 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88028.7 NaN 1429 1502 2931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2935 25.298 NaN 136120 35 0 22807 0.327 -1 STMSTNGIPR 10 34 540.2612129049423 1078.5078728766846 2 540.2611083984375 MULTI HCD FTMS 0 0 0 2934 61191.81640625 0.7646030640926846 -4 0.04493904113769531 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 32.037481411007896 0.2145045983280644 1 {[MG]|[TS]}{M(Oxidation (M))|F}STNG{I|L}PR 10 -1 + 52.344 0 0 4.8534 4.8534 85.259 0 0 0 52.34427538256881 15.026975159433526 15.026975159433526 9.164539485499255 0 0.5 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}STNG{I|L}PR;{[MG]|[TS]}{M(Oxidation (M))|F}STGGG{I|L}PR 4.8534;4.0037 +;- + 53 + NaN NaN 117830.8 NaN 1430 1503 2934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2936 25.302 NaN 47035 35 0 9093.1 0.261 + 26462 STSETPQPPR 10 28 550.2728517008293 1098.5311504684585 2 550.2728881835938 MULTI HCD FTMS 0 0 0 2934 11252.7734375 0.7863417710030143 -4 0.04493904113769531 2 Unmodified _STSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 1.4819007175156935 0.4674597685733628 1 H 1 10 2.4743 0 0 0.22523 0 0 811.5489249819335 146.90206323795158 958.4509882198851 0 0 0 0 0 0 0 0 0 H 0.22523 - 1 + NaN NaN 110382.6 NaN 1431 1503 2934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2938 25.308 NaN 57372 35 0 9352.9 0.327 + 8765 HHTKANNK 8 30 475.2509361093792 NaN 0 475.2424621582031 PEAK HCD FTMS 0 0 0 2937 1992.3232421875 0.7200100088689307 1 -0.009901046752929688 1 Unmodified _HHTKANNK_ ENSG00000185306|ENST00000543942|C12orf56;nc|nan|Q8IXR9-2|C12orf56 2.577480529830294 0.38822285293237185 1 R{M(Oxidation (M))|F} 2 8 9.464 0 0 0.99779 0 0 299.1668979982522 343.17380701236567 642.3407050106179 0 0 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 0.99779 - 4 + NaN NaN 90402.9 NaN 1432 1504 2937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2939 25.312 NaN 90214 35 0 9761.6 0.261 + 3135 EAQEIVRH 8 39 491.25914955881217 980.5037461844244 2 491.25927734375 MULTI HCD FTMS 0 0 0 2937 19712.931640625 0.00859566543355816 116 -1.496368408203125 2 Unmodified _EAQEIVRH_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9;PARP1-LIN9|1|fusion 7.910154910731844 0.5302565402355366 1 {I|L}V[RH] 4 4 10.802 0 0 1.1017 0 0 457.1800289986806 0 457.1800289986806 0 6.822581265925436 0 0 0 0 0 0 0 + {I|L}V[RH] 1.1017 + + 11 + NaN NaN 91032.1 NaN 1433 1504 2937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2942 25.325 NaN 103250 35 0 13974 0.327 + 3074 EAGPSIVHR 9 44 483.26188427572185 964.5092156182437 2 483.2616271972656 MULTI HCD FTMS 0 0 0 2941 39300.62890625 0.05979282066881498 28 -0.3720226287841797 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 12.240655878213236 0.2545997876781172 1 {[CP]|[EA]}G[PS]{I|L}VHR 9 0 + 38.874 0 0 4.0304 4.0304 86.936 0 0 0 17.90484985457369 16.47817481888638 16.47817481888638 14.259687322722819 0 0 0 0 0 + + {[CP]|[EA]}G[PS]{I|L}VHR;{[ET]|[MV]}[NP]{I|L}VHR;[RH]{[QD]|[EN]|[WG]|[KD]|[RS]}VV[DP] 4.0304;2.552;0.50213 +;-;- + 73 + NaN NaN 105421.3 NaN 1434 1506 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2943 25.33 NaN 103880 35 0 9916.7 0.261 -1 RDMPKVLH 8 46 506.2738891198128 1010.5332253064256 2 506.75665283203125 MULTI HCD FTMS 0 0 0 2941 1837.568115234375 1 0 0 2 Oxidation (M) _RDM(Oxidation (M))PKVLH_ ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3 2.302733041254933 0.5385759549224092 1 ET 2 -1 10.969 0 0 1.0855 0 0 187.11434613772036 590.306044974432 777.4203911121524 0 0 0 0 0 0 0 0 0 ET 1.0855 - 11 + NaN NaN 90109.2 NaN 1435 1506 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2944 25.333 NaN 53548 35 0 5468.2 0.262 + 3405 EEYEHRGTPV 10 34 406.1908430116348 1215.5506996351044 3 406.1912841796875 MULTI HCD FTMS 0 0 0 2941 9260.345703125 0.505779672237753 6 -0.08247184753417969 3 Unmodified _EEYEHRGTPV_ KLHL4|p.G40E|1|0.27|ENSG00000102271|chrX:87518012-87518012|G/A|missense_variant 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92405 NaN 1436 1506 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2945 25.336 NaN 78027 35 0 10954 0.261 + 32818 WTVPSPVPSHP 11 38 401.8778357069083 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 2941 14463.3203125 0.20448717410600478 722 -14.94466781616211 4 Unmodified _WTVPSPVPSHP_ REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF 1.1933415558491238 0.338734977139133 1 N 1 -1 0.9691 0 0 0.12087 0 0 382.75239274995096 301.91510950260005 684.667502252551 0 0 0 0 0 0 0 0 0 N 0.12087 - 1 + NaN NaN 96095.4 NaN 1437 1506 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2946 25.34 NaN 31418 35 0 4669 0.261 + 16402 LSITPGMATP 10 26 494.2640193789829 NaN 0 494.26434326171875 PEAK HCD FTMS 0 0 0 2941 9839.55859375 0.891037289965432 2 -0.03335762023925781 5 Unmodified _LSITPGMATP_ REV__ENSG00000146083|ENST00000274811|RNF44;REV__ENST00000508478.1_1_5:175956522-175957037:-|nuORF;REV__ENST00000515051.1_1_5:175956671-175956806:-|nuORF;REV__nc|ENSG00000146083|Q7L0R7-2|RNF44 1.4819007175156935 0.33891598740166873 1 V 1 -1 6.9897 0 0 0.70853 0 0 630.3207500843346 254.1033114068969 884.4240614912314 0 0 0 0 0 0 0 0 0 V 0.70853 - 1 + NaN NaN 79128.4 NaN 1438 1506 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2947 25.343 NaN 42469 35 0 7999.7 0.261 + 3069 EAGENQKQP 9 17 500.7384986846513 999.4624444361026 2 500.738525390625 MULTI HCD FTMS 0 0 0 2941 7626.9658203125 0.17222405496341844 -10 0.10407829284667969 6 Unmodified _EAGENQKQP_ ENSG00000161921|ENST00000293778|CXCL16 6.2057823575117 0.30397260197431997 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E 3 7 20.458 0 0 2.0469 0 0 0 610.2961901238557 610.2961901238557 20.457574905606748 0 0 0 0 1 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E 2.0469 - 4 NaN NaN 105013.3 NaN 1439 1506 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2949 25.349 NaN 108260 35 0 13277 0.327 -1 MPVRAADKL 9 38 508.78110465053743 1015.5476563678749 2 508.7809143066406 MULTI HCD FTMS 0 0 0 2948 52836.0078125 0.9852281529262024 -2 0.0308074951171875 1 Oxidation (M) _M(Oxidation (M))PVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 9.38312468134398 0.279288223203164 1 D[K{I|L}] 3 -1 16.567 0 0 1.6313 0 0 641.3309338110374 0 641.3309338110374 0 12.587418566968157 0 0 0 1 0 0 0 D[K{I|L}] 1.6313 + + 12 + NaN NaN 98583.6 NaN 1440 1507 2948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2950 25.353 NaN 56641 35 0 8609.6 0.261 -1 CWGPHCFEM 9 27 563.2015890093004 1124.3886250854007 2 563.7017211914062 MULTI HCD FTMS 0 0 0 2948 8476.1572265625 0.5296917723888624 4 -0.05034065246582031 2 Oxidation (M) _CWGPHCFEM(Oxidation (M))_ nc|ENSG00000082684|Q9P283-2|SEMA5B 2.0597508629832335 0.3354026079994024 1 E{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7311 0 0 830.3012562482437 0 830.3012562482437 0 9.006375246153906 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.7311 + + 12 NaN NaN 85680.6 NaN 1441 1507 2948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2952 25.359 NaN 877010 35 0 43003 0.327 + 9531 HRDYETATL 9 96 553.2672343400287 1104.5199157468574 2 553.7554931640625 MULTI HCD FTMS 0 0 0 2951 121615 0.04182681535136812 43 -0.5505962371826172 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 36.12702656103203 0.08312389501731911 1 [PS]EEKQCA 8 8 43.012 0 0 3.8942 0 0 0 229.11987421109646 229.11987421109646 9.024749761947696 0 0 0 0 0.6307196863200843 0 1.6886218330464624 0 [PS]EEKQCA 3.8942 - 3087 NaN NaN 209324.2 NaN 1442 1508 2951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2953 25.363 NaN 156830 35 0 14996 0.261 + 9192 HPLHNDPNL 9 49 528.764767141177 1055.514981349154 2 528.7645874023438 MULTI HCD FTMS 0 0 0 2951 87173.34375 0.4591292935354467 12 -0.1540203094482422 2 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 47.594388314883695 0.03493607795751234 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV]QHPD 8 6 33.109 0 0 3.1368 0 0 0 127.08273321226967 127.08273321226967 21.694699959806982 0 0 0 0 1 0 0.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV]QHPD 3.1368 - 104 NaN NaN 106705 NaN 1443 1508 2951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2954 25.367 NaN 43938 35 0 7288.7 0.261 + 28042 TGECLCYE 8 29 459.1719822091014 NaN 0 459.1719665527344 PEAK HCD FTMS 0 0 0 2951 25886.5703125 0.7844956629937885 96 -1.2219047546386719 3 Unmodified _TGECLCYE_ ASTN1|p.M489I|1|0.21|ENSG00000152092|chr1:177014847-177014847|C/G|missense_variant;ENSG00000152092|ENST00000361833|ASTN1;ENST00000281881.7_1_1:176905297-177133812:-|nuORF;ENST00000473640.1_1_1:176950899-176993727:-|nuORF;nc|ENSG00000152092|O14525-3|ASTN1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88397 NaN 1444 1508 2951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2955 25.37 NaN 52789 35 0 10693 0.261 + -1 AGGPEEEPEM 10 25 531.2081986195946 1060.401844305989 2 531.208251953125 MULTI HCD FTMS 0 0 0 2951 22816.65625 0.638470573125176 10 -0.13076210021972656 4 Oxidation (M) _AGGPEEEPEM(Oxidation (M))_ REV__ENSG00000122824|ENST00000356450|NUDT10;REV__ENSG00000173598|ENST00000415493|NUDT4;REV__ENSG00000177144|ENST00000322209|NUDT4B;REV__ENSG00000196368|ENST00000375992|NUDT11;REV__nc|ENSG00000173598|Q9NZJ9-3|NUDT4 5.731851221503515 0.44496410492002586 1 E[EP]{M(Oxidation (M))|F} 4 -1 18.188 0 0 1.7152 0 0 540.2199574201187 0 540.2199574201187 0 18.187587626244124 0 0 0 0.5 0 0 0 E[EP]{M(Oxidation (M))|F} 1.7152 + + 2 NaN NaN 95569.1 NaN 1445 1508 2951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2957 25.375 NaN 105670 35 0 19076 0.327 + 8799 HINHDDPSL 9 37 524.2461295060384 1046.4777060788767 2 524.2462158203125 MULTI HCD FTMS 0 0 0 2956 39420.7421875 0.41706758019710194 -7 0.08740806579589844 1 Unmodified _HINHDDPSL_ ENSG00000085872|ENST00000546361|CHERP 43.77239144664712 0.04802738721622131 1 DPS{I|L} 4 5 41.428 0 0 3.9588 0 0 616.2710112837193 0 616.2710112837193 0 30.190775249321078 0 0 0 0.8252574989159953 0 0.4247425010840047 0 + DPS{I|L} 3.9588 + + 36 NaN NaN 93181.3 NaN 1446 1509 2956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2958 25.38 NaN 49269 35 0 6591.9 0.261 + 14442 LERQEDLE 8 32 516.2543198975824 1030.4940868619647 2 516.2540893554688 MULTI HCD FTMS 0 0 0 2956 10959.1416015625 0.3178801477036591 5 -0.07257843017578125 2 Unmodified _LERQEDLE_ ENSG00000150760|ENST00000623213|DOCK1;ENST00000473861.1_1_10:128908515-128926040:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1 4.75600775471527 0.5349361699807423 1 E[{M(Oxidation (M))|F}T] 3 7 14.705 0 0 1.427 0 0 635.3579917465335 0 635.3579917465335 0 14.704999916446797 0 0 0 0 0 0.4247425010840047 0 E[{M(Oxidation (M))|F}T] 1.427 - 8 + NaN NaN 79475.4 NaN 1447 1509 2956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2959 25.383 NaN 19634 35 0 3734.8 0.261 -1 PMGIHSPHLQ 10 18 566.7839604001847 NaN 0 566.7837524414062 PEAK HCD FTMS 0 0 0 2956 6231.95263671875 1 0 0 3 Oxidation (M) _PM(Oxidation (M))GIHSPHLQ_ ENST00000296140.3_1_3:46245112-46245334:-|nuORF 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89803.4 NaN 1448 1509 2956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2961 25.389 NaN 21614 35 0 4461.8 0.326 + 30776 VPPWYLCIF 9 21 569.2936887561287 1136.5728245790574 2 569.2933959960938 MULTI HCD FTMS 0 0 0 2960 4592.50537109375 0.14180357355008463 14 -0.18184852600097656 1 Unmodified _VPPWYLCIF_ ENSG00000089057|ENST00000338244|SLC23A2;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;nc|ENSG00000089057|Q9UGH3-2|SLC23A2;SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant 0 0.3510170533115441 1 P 1 8 4.6041 0 0 0.40509 0 0 711.6126633015168 324.8921297662719 1036.5047930677888 0 0 0 0 0 0 0 0 0 + P 0.40509 + + 1 + NaN NaN 94200.9 NaN 1449 1510 2960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2962 25.393 NaN 47138 35 0 9707.8 0.262 + 14300 LDFLGMIF 8 22 478.25136658354165 954.4881802338833 2 478.2509765625 MULTI HCD FTMS 0 0 0 2960 7996.01318359375 0.7889567204507775 -10 0.12256050109863281 2 Unmodified _LDFLGMIF_ ENSG00000162600|ENST00000371226|OMA1;nc|ENSG00000162600|Q96E52-2|OMA1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91270.2 NaN 1450 1510 2960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2964 25.399 NaN 18864 35 0 2529.5 0.411 -1 YLVRMDPL 8 27 511.7723388671875 NaN 0 511.7723388671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _YLVRM(Oxidation (M))DPL_ ENSG00000135655|ENST00000280377|USP15;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80516.1 NaN 1451 1511 2963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2966 25.408 NaN 134110 35 0 16840 0.327 + 12370 KPAENDVKL 9 45 507.2849786333182 1012.5554043334364 2 507.2847900390625 MULTI HCD FTMS 0 0 0 2965 60364.34375 0.5267474102297162 -8 0.09997749328613281 1 Unmodified _KPAENDVKL_ ENSG00000164332|ENST00000296786|UBLCP1 14.405379775768559 0.2358970535022398 1 VK{I|L} 3 6 28.188 0 0 2.7838 0 0 654.2976188296549 0 654.2976188296549 0 8.723637474483468 0 0 0 0.5 0 0 0 + VK{I|L} 2.7838 + + 14 NaN NaN 108395.7 NaN 1452 1512 2965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2967 25.412 NaN 91487 35 0 10284 0.261 -1 TAVKNDYEM 9 36 543.7423522136379 1085.4701514940757 2 543.7420043945312 MULTI HCD FTMS 0 0 0 2965 35739.80078125 0.15235014205642933 51 -0.6703968048095703 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 14.405379775768559 0.2358970535022398 1 E{M(Oxidation (M))|F} 2 -1 22.831 0 0 2.1033 0 0 791.3838965325045 0 791.3838965325045 0 5.836134377877329 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 2.1033 + + 16 NaN NaN 113946.8 NaN 1453 1512 2965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2968 25.416 NaN 81047 35 0 8190 0.261 + 3557 EITGNTVER 9 38 509.7617413936124 1017.5089298540248 2 509.7614440917969 MULTI HCD FTMS 0 0 0 2965 27512.947265625 0.8030735146026748 -5 0.059268951416015625 3 Unmodified _EITGNTVER_ ENSG00000129675|ENST00000250617|ARHGEF6;nc|ENSG00000129675|Q15052-2|ARHGEF6 8.155526934196011 0.2891920862272901 1 {[QN]|[E{I|L}]|[KN]}T 3 6 14.705 0 0 1.4452 0 0 0 671.3138521783811 671.3138521783811 10.268024924119672 0 0 0 0 0 0 0.4247425010840047 0 + {[QN]|[E{I|L}]|[KN]}T 1.4452 + + 11 + NaN NaN 93308.1 NaN 1454 1512 2965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2969 25.419 NaN 56153 35 0 6558.6 0.262 -1 RYMPPAHRNF 10 28 435.54865661797754 1303.6241404541327 3 435.883056640625 MULTI HCD FTMS 0 0 0 2965 19281.92578125 0.24133774062402003 90 -1.14111328125 4 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 1.7422754331352037 0.46608156381052757 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86759.3 NaN 1455 1512 2965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2970 25.422 NaN 38301 35 0 7425.7 0.261 -1 0 26 469.32864488262436 468.32136841602437 1 469.3283996582031 MULTI HCD FTMS 0 0 0 2965 11101.4443359375 0.43710446584942747 -52 0.6631546020507812 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89446.5 NaN 1456 1512 2965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2971 25.426 NaN 68514 35 0 9976.5 0.261 + -1 GEEMMMDPI 9 38 550.7016111989603 1099.3886694647206 2 550.7015380859375 MULTI HCD FTMS 0 0 0 2965 11176.357421875 0.9063603911467315 -6 0.08247184753417969 6 3 Oxidation (M) _GEEM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))DPI_ REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF 4.3292370932331545 0.3181982124262546 1 R 1 -1 0.71334 0 0 0.064885 0 0 648.1722520836644 292.09736047916255 940.269612562827 0 0 0 0 0 0 0 0 0 R 0.064885 - 20 + NaN NaN 87646.8 NaN 1457 1512 2965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2973 25.431 NaN 100030 35 0 16052 0.327 -1 STMSTNGIPR 10 32 540.2612129049423 1078.5078728766846 2 540.2610473632812 MULTI HCD FTMS 0 0 0 2972 47078.296875 0.5882520270997134 6 -0.06838226318359375 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 32.037481411007896 0.2145045983280644 1 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}PR 10 -1 + 43.421 0 0 4.0261 4.0261 83.979 0 0 0 43.42145952513228 15.02697515943353 15.02697515943353 9.164539485499247 0 0.8807196863200843 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}PR;{[MG]|[TS]}{M(Oxidation (M))|F}STGG{[VA]|[{I|L}G]}PR 4.0261;3.1763 +;- + 31 + NaN NaN 97870.7 NaN 1458 1513 2972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2974 25.436 NaN 49694 35 0 7401.6 0.261 -1 QPDEEPMDM 9 33 562.1994252385492 NaN 0 562.1995849609375 PEAK HCD FTMS 0 0 0 2972 12034.810546875 0.43739881490052296 -9 0.12320327758789062 2 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 12.240655878213236 0.2359303321180293 1 D 1 -1 11.99 0 0 1.0682 0 0 165.04562674487335 839.2885836236936 1004.334210368567 0 0 0 0 0 0.5 0 0 0 D 1.0682 + + 1 + NaN NaN 85899.2 NaN 1459 1513 2972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2975 25.439 NaN 45929 35 0 8947.4 0.261 + -1 GEEMMMDPI 9 17 550.7016111989603 1099.3886694647206 2 550.70166015625 MULTI HCD FTMS 0 0 0 2972 8281.9833984375 0.6716375854074313 -5 0.07234001159667969 3 3 Oxidation (M) _GEEM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))DPI_ REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF 4.3292370932331545 0.3181982124262546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 88464.8 NaN 1460 1513 2972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2976 25.442 NaN 34933 35 0 7458.1 0.261 -1 GEEPRCQGW 9 21 559.7368225040004 NaN 0 559.7369995117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _GEEPRC(Carbamidomethyl (C))QGW_ nc|ENSG00000160224|O43918-3|AIRE 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84730.6 NaN 1461 1513 2972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2978 25.448 NaN 63802 35 0 9366.8 0.327 + -1 LTNEVARM 8 33 475.24228026692316 948.4700076006463 2 475.2421875 MULTI HCD FTMS 0 0 0 2977 31167.490234375 0.766018397204542 6 -0.06485176086425781 1 Oxidation (M) _LTNEVARM(Oxidation (M))_ REV__ENSG00000164989|ENST00000380701|CCDC171;REV__ENST00000470191.5_1_9:15845666-15971831:+|nuORF;REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171;REV__nc|ENSG00000164989|Q6TFL3-4|CCDC171 5.230669730166228 0.5342319408533849 1 GVT{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 6 -1 14.614 0 0 1.5408 0 0 299.1456303874798 0 299.1456303874798 0 7.6245626185712485 0 0 0 0 0 0 0 GVT{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 1.5408 - 27 + NaN NaN 101732.3 NaN 1462 1514 2977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2979 25.452 NaN 52930 35 0 6755.3 0.261 + 21888 QDEILAHR 8 27 491.25914955881217 980.5037461844244 2 491.25909423828125 MULTI HCD FTMS 0 0 0 2977 25048.203125 0.01092206769137255 126 -1.6447792053222656 2 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 2.302733041254933 0.5385759549224092 1 V[RH] 3 6 10.458 0 0 1.0666 0 0 570.2646542428213 0 570.2646542428213 0 5.853481135844875 0 0 0 0 0 0 0 V[RH] 1.0666 - 13 + NaN NaN 86169.1 NaN 1463 1514 2977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2980 25.456 NaN 26233 35 0 11982 0.261 + 32624 WLRNGHNQ 8 14 512.7578735351562 NaN 0 512.7578735351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WLRNGHNQ_ ENST00000420737.1_1:146016970-146019748:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85616.9 NaN 1464 1514 2977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2982 25.461 NaN 67281 35 0 7947.4 0.327 -1 SADLRADAM 9 33 483.22148459726077 964.4284162613216 2 483.2212829589844 MULTI HCD FTMS 0 0 0 2981 34245.49609375 0.8709627361125613 -1 0.013452529907226562 1 Oxidation (M) _SADLRADAM(Oxidation (M))_ ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25910858-25911257:+|nuORF 27.223235318498237 0.1251536255799991 1 {[SA]|[TG]}D{I|L}RADA{M(Oxidation (M))|F} 9 -1 + 39.307 0 0 4.0757 4.0757 89.25 0 0 0 4.137342758552698 16.119412640251348 4.137342758552698 39.30700026649547 0 1.5484550065040281 0 0 0 {[SA]|[TG]}D{I|L}RADA{M(Oxidation (M))|F} 4.0757 + + 73 NaN NaN 91555.5 NaN 1465 1515 2981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2983 25.466 NaN 45080 35 0 11382 0.261 + 11877 KFDFSNLS 8 25 479.23820468031 956.46185642742 2 479.23480224609375 MULTI HCD FTMS 0 0 0 2981 5207.953125 0.23586700411084283 -9 0.13597869873046875 2 Unmodified _KFDFSNLS_ ENSG00000005700|ENST00000306270|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK 1.844237919475145 0.5392561982033289 1 T 1 8 6.9897 0 0 0.73079 0 0 90.04863170210986 762.3449190729124 852.3935507750223 0 0 0 0 0 0 0 0 0 T 0.73079 - 4 + NaN NaN 90768.4 NaN 1466 1515 2981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2985 25.471 NaN 50750 35 0 6974.5 0.411 + 2261 DLLFFCVV 8 36 478.25136658354165 954.4881802338833 2 478.7376708984375 MULTI HCD FTMS 0 0 0 2984 1278.86328125 0.2771595482884093 4 -0.0412750244140625 1 Unmodified _DLLFFCVV_ ENSG00000164953|ENST00000453321|TMEM67 2.577480529830294 0.5381683276125971 1 T 1 8 5.4846 0 0 0.57461 0 0 88.0754016017623 762.3447021261136 850.4201037278759 0 0 0 0 0 0 0 0 0 T 0.57461 - 7 + NaN NaN 102799.8 NaN 1467 1516 2984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2987 25.479 NaN 652770 35 0 35686 0.327 + 9532 HRDYETATL 9 81 553.2672343400287 1104.5199157468574 2 553.7554931640625 MULTI HCD FTMS 0 0 0 2986 85886.78125 0.029538877116039104 52 -0.667816162109375 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 29.081581746732265 0.1154664336125038 1 [PS]EEKQCA 8 8 54.18 0 0 4.9053 0 0 0 229.1205097170662 229.1205097170662 15.319357047944862 0 0 0 0 0.6549471895720985 1.6989700043360187 1.4802046884880937 0 [PS]EEKQCA 4.9053 - 2168 NaN NaN 177063.3 NaN 1468 1517 2986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2988 25.484 NaN 42068 35 0 8713 0.261 + 30497 VLYYEETKS 9 20 566.2815115475706 1130.5484701619412 2 566.280517578125 MULTI HCD FTMS 0 0 0 2986 8290.212890625 0.5642685699890392 -6 0.08061790466308594 2 Unmodified _VLYYEETKS_ ENSG00000181830|ENST00000314134|SLC35C1;nc|ENSG00000181830|Q96A29-2|SLC35C1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89083 NaN 1469 1517 2986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2990 25.489 NaN 61838 35 0 7203.4 0.327 + 9193 HPLHNDPNL 9 28 528.764767141177 1055.514981349154 2 528.7646484375 MULTI HCD FTMS 0 0 0 2989 46484.875 0.24482906013151007 22 -0.2899169921875 1 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 10.073929032068715 0.27331982688540024 1 [WR]H 3 8 13.072 0 0 1.2384 0 0 0 573.2457369440061 573.2457369440061 13.071968632008437 0 0 0 0 0.5 0 0 0 [WR]H 1.2384 - 12 + NaN NaN 91396.9 NaN 1470 1518 2989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2991 25.494 NaN 27720 35 0 9228.8 0.261 + 30267 VKGSRTTSSSS 11 13 548.7830810546875 NaN 0 548.7830810546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VKGSRTTSSSS_ REV__ENST00000591945.1_1_17:40118860-40120019:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81141.8 NaN 1471 1518 2989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2993 25.499 NaN 130270 35 0 22877 0.327 + 8800 HINHDDPSL 9 39 524.2461295060384 1046.4777060788767 2 524.2460327148438 MULTI HCD FTMS 0 0 0 2992 61848.94140625 0.6543557248964348 3 -0.04424285888671875 1 Unmodified _HINHDDPSL_ ENSG00000085872|ENST00000546361|CHERP 41.95555342248728 0.056367691549927025 1 DPS{I|L} 4 5 36.128 0 0 3.4523 0 0 616.2717152326187 0 616.2717152326187 0 14.361818737241734 0 0 0 1.1435078169319297 0 0.8494850021680094 0 + DPS{I|L} 3.4523 + + 74 NaN NaN 99413.7 NaN 1472 1519 2992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2994 25.504 NaN 36023 35 0 5114.3 0.261 + 28047 TGICHFFY 8 22 494.2219706758141 986.4293884184282 2 494.7223205566406 MULTI HCD FTMS 0 0 0 2992 13843.5927734375 0.9161806080313035 -4 0.0381011962890625 2 Unmodified _TGICHFFY_ ENSG00000044446|ENST00000379942|PHKA2;ENST00000469485.5_1_X:18911605-18915466:-|nuORF;ENST00000473597.1_1_X:18911605-18913336:-|nuORF;PHKA2|p.A1204S|1|0.28|ENSG00000044446|chrX:18893583-18893583|C/A|missense_variant 2.8892196856762586 0.5377058178582064 1 P 1 8 1.5938 0 0 0.16157 0 0 394.03078109596566 492.3106783502563 886.341459446222 0 0 0 0 0 0 0 0 0 P 0.16157 - 1 + NaN NaN 85643.8 NaN 1473 1519 2992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2995 25.507 NaN 16914 35 0 4701.1 0.261 + 33700 YKVKRDQLQ 9 13 589.3381854866541 1176.661818040108 2 589.3386840820312 MULTI HCD FTMS 0 0 0 2992 5798.328125 0.0958263308016517 -10 0.12413215637207031 3 Unmodified _YKVKRDQLQ_ REV__ENSG00000184470|ENST00000400521|TXNRD2;REV__ENST00000400518.5_2_22:19864636-19919892:-|nuORF;REV__ENST00000400525.6_1_22:19864636-19929326:-|nuORF;REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF;REV__ENST00000496729.2_1_22:19902718-19929326:-|nuORF;REV__nc|ENSG00000184470|Q9NNW7-2|TXNRD2;REV__nc|ENSG00000184470|Q9NNW7-3|TXNRD2 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86002.7 NaN 1474 1519 2992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2998 25.52 NaN 205060 35 0 36062 0.327 + 7952 GEASRLAHY 9 38 502.25159354454667 1002.4886341558934 2 502.2514343261719 MULTI HCD FTMS 0 0 0 2997 97198.765625 0.8966195020677512 -1 0.00775909423828125 1 Unmodified _GEASRLAHY_ ENSG00000124635|ENST00000339812|H2BC11;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P 14.405379775768559 0.2358970535022398 1 AHY 3 6 29.693 0 0 2.9619 0 0 613.3182850568375 0 613.3182850568375 0 10.752574989159953 0 0 0 0.5 0 0 0 + AHY 2.9619 + + 15 NaN NaN 124076.3 NaN 1475 1521 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 2999 25.525 NaN 67227 35 0 5725.7 0.261 + 3075 EAGPSIVHR 9 37 483.26188427572185 964.5092156182437 2 483.26153564453125 MULTI HCD FTMS 0 0 0 2997 21921.28515625 0.0333515139237165 43 -0.5653533935546875 2 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 12.240655878213236 0.2545997876781172 1 S{I|L}VHR 5 4 25.662 0 0 2.6606 0 0 354.15522499499997 0 354.15522499499997 0 9.463950151760656 0 0 0 0 0 0 0 + S{I|L}VHR 2.6606 + + 44 + NaN NaN 83539.1 NaN 1476 1521 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3000 25.528 NaN 28386 35 0 3461.6 0.261 + 28048 TGICHFFY 8 20 494.2219706758141 986.4293884184282 2 494.72259521484375 MULTI HCD FTMS 0 0 0 2997 12281.0498046875 0.8127702007321772 -2 0.02105712890625 3 Unmodified _TGICHFFY_ ENSG00000044446|ENST00000379942|PHKA2;ENST00000469485.5_1_X:18911605-18915466:-|nuORF;ENST00000473597.1_1_X:18911605-18913336:-|nuORF;PHKA2|p.A1204S|1|0.28|ENSG00000044446|chrX:18893583-18893583|C/A|missense_variant 2.8892196856762586 0.5377058178582064 1 {[SA]|[TG]}D 3 6 7.4473 0 0 0.75497 0 0 0 710.3151949518186 710.3151949518186 4.348331157524969 0 0 0 0 0 0 0 0 {[SA]|[TG]}D 0.75497 - 6 + NaN NaN 79869.9 NaN 1477 1521 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3001 25.532 NaN 25304 35 0 4417.3 0.261 -1 CHLLYAQM 8 22 497.7291441013173 NaN 0 497.7292785644531 PEAK HCD FTMS 0 0 0 2997 2198.376220703125 0.23399223267991356 1 -0.02318572998046875 4 Oxidation (M) _CHLLYAQM(Oxidation (M))_ ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR 2.577480529830294 0.38822285293237185 1 P 1 -1 2.4743 0 0 0.24906 0 0 381.63887794697206 511.73945032291243 893.3783282698845 0 0 0 0 0 0 0 0 0 P 0.24906 - 1 + NaN NaN 79121.3 NaN 1478 1521 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3002 25.535 NaN 40935 35 0 4600.1 0.261 + -1 LIFPRGQA 8 22 472.26951723160147 942.524481530003 2 472.26861572265625 MULTI HCD FTMS 0 0 0 2997 6892.724609375 0.8273368898608022 -4 0.04097557067871094 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LIFPRGQA_ REV__ENST00000445339.1_1_1:230138511-230138643:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85165.4 NaN 1479 1521 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3003 25.538 NaN 17549 35 0 4647.7 0.261 -1 MLQWRRRHCCF 11 11 569.9294989736477 NaN 0 570.3023681640625 PEAK HCD FTMS 0 0 0 2997 2071.39599609375 1 0 0 6 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))LQWRRRHC(Carbamidomethyl (C))C(Carbamidomethyl (C))F_ ENSG00000162630|ENST00000367434|B3GALT2 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84591.4 NaN 1480 1521 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3005 25.544 NaN 171160 35 0 29055 0.327 + 12371 KPAENDVKL 9 45 507.2849786333182 1012.5554043334364 2 507.28472900390625 MULTI HCD FTMS 0 0 0 3004 89729.78125 0.7829941809632684 2 -0.02691650390625 1 Unmodified _KPAENDVKL_ ENSG00000164332|ENST00000296786|UBLCP1 41.95555342248728 0.056367691549927025 1 VK{I|L} 3 6 30.177 0 0 2.9803 0 0 654.2980749482351 0 654.2980749482351 0 5.400990676322905 0 0 0 1 0 0 0 + VK{I|L} 2.9803 + + 17 NaN NaN 107779.3 NaN 1481 1522 3004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3006 25.548 NaN 65211 35 0 8960.4 0.261 -1 TAVKNDYEM 9 32 543.7423522136379 1085.4701514940757 2 543.7420043945312 MULTI HCD FTMS 0 0 0 3004 36458.71484375 0.15541469913716438 61 -0.75616455078125 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 17.44264345198275 0.2096557692338702 1 YE{M(Oxidation (M))|F} 3 -1 19.041 0 0 1.7542 0 0 628.323534080275 0 628.323534080275 0 1.6060561250048302 0 0 0 0 0 0 0 YE{M(Oxidation (M))|F} 1.7542 + + 10 NaN NaN 103369.5 NaN 1482 1522 3004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3007 25.552 NaN 14346 35 0 3665.7 0.261 + 14540 LFEWLWML 8 12 569.2936887561287 1136.5728245790574 2 569.2933349609375 MULTI HCD FTMS 0 0 0 3004 1779.24951171875 0.054938191381771494 25 -0.3241996765136719 3 Unmodified _LFEWLWML_ REV__ENST00000348993.9_1_15:85175130-85180634:+|nuORF;REV__nc|ENSG00000176700|Q9GZW5-2|SCAND2P 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80781.8 NaN 1483 1522 3004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3009 25.557 NaN 46587 35 0 9790.7 0.327 -1 QPDEEPMDM 9 22 562.1994252385492 NaN 0 562.1990356445312 PEAK HCD FTMS 0 0 0 3008 20498.62109375 0.7450115262370518 1 -0.01345062255859375 1 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 13.90604991867851 0.22786006501039813 1 E 1 -1 11.237 0 0 1.0012 0 0 469.17953787768585 521.1383150690061 990.317852946692 0 0 0 0 0 0.4247425010840047 0 0 0 E 1.0012 + + 1 + NaN NaN 89066.1 NaN 1484 1523 3008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3010 25.562 NaN 47500 35 0 4860.2 0.261 + 21955 QEKTEVER 8 30 509.7617413936124 1017.5089298540248 2 509.7617492675781 MULTI HCD FTMS 0 0 0 3008 9375.076171875 0.2736484498853422 6 -0.08235740661621094 2 Unmodified _QEKTEVER_ ENSG00000174652|ENST00000592904|ZNF266;ENST00000588933.5_1_19:9529772-9530765:-|nuORF 1.844237919475145 0.5392561982033289 1 V{[RE]|[WV]} 3 5 8.072 0 0 0.79331 0 0 615.286500510078 0 615.286500510078 0 5.597718523607968 0 0 0 0 0 0 0 + V{[RE]|[WV]} 0.79331 + + 4 + NaN NaN 88508 NaN 1485 1523 3008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3011 25.565 NaN 36988 35 0 11697 0.261 -1 0 20 469.32864488262436 468.32136841602437 1 469.3283386230469 MULTI HCD FTMS 0 0 0 3008 7631.69482421875 0.3004877373358707 -41 0.5065364837646484 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86452.9 NaN 1486 1523 3008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3013 25.571 NaN 82528 35 0 11572 0.327 + 26473 STVGSAISR 9 32 439.2405488160625 876.4665446989251 2 439.2404479980469 MULTI HCD FTMS 0 0 0 3012 46968.828125 0.6011372193410279 -7 0.09107780456542969 1 Unmodified _STVGSAISR_ ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 27.223235318498237 0.1251536255799991 1 {[MG]|[TS]}VGSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 41.832 0 0 4.7727 4.7727 83.899 0 0 0 38.3366748685809 5.6424927368725974 5.6424927368725974 6.478174818886373 0 0.8252574989159953 0 0.4247425010840047 0 + + {[MG]|[TS]}VGSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MG]|[TS]}RSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MG]|[TS]}V{[QS]|[NT]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.7727;4.0336;2.411 +;-;- + 40 + NaN NaN 90620.3 NaN 1487 1524 3012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3014 25.579 NaN 57279 35 0 12156 0.268 + 691 APWDHRPP 8 23 488.2430056337292 NaN 0 488.2427062988281 PEAK HCD FTMS 0 0 0 3012 6597.958984375 0.3791078513471627 -43 0.5334281921386719 2 Unmodified _APWDHRPP_ ENST00000397147.6_1_22:37257112-37260979:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103003.1 NaN 1488 1524 3012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3016 25.585 NaN 59365 35 0 4761.6 0.412 + 3136 EAQEIVRH 8 48 491.25914955881217 980.5037461844244 2 491.2594299316406 MULTI HCD FTMS 0 0 0 3015 16480.71875 0.007186284975879794 137 -1.8658332824707031 1 Unmodified _EAQEIVRH_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9;PARP1-LIN9|1|fusion 8.593279151180031 0.5292430274356741 1 {I|L}VHR 4 6 28.928 0 0 2.9503 0 0 457.1801510689931 0 457.1801510689931 0 24.948500216800937 0 0 0 0 0 0 0 {I|L}VHR 2.9503 - 23 + NaN NaN 97562.3 NaN 1489 1525 3015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3018 25.593 NaN 72425 35 0 11390 0.327 + 17412 LYRCMVTA 8 26 478.73766970539015 NaN 0 478.7374267578125 PEAK HCD FTMS 0 0 0 3017 31928.40234375 0.6783855699074839 2 -0.033382415771484375 1 Unmodified _LYRCMVTA_ ENSG00000134247|ENST00000393203|PTGFRN;ENST00000496699.1_1_1:117509714-117517097:+|nuORF 7.910154910731844 0.38822285293237185 1 T 1 7 15.797 0 0 1.6533 0 0 89.04687956722599 762.34408703497 851.390966602196 0 0 0 0 0 0.5 0 0.3807196863200844 0 + T 1.6533 + + 2 + NaN NaN 94193.2 NaN 1490 1526 3017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3019 25.597 NaN 44515 35 0 4628.3 0.261 -1 RYMPPAHRNF 10 25 435.54865661797754 1303.6241404541327 3 435.8834533691406 MULTI HCD FTMS 0 0 0 3017 20922.96484375 0.26187742447679313 104 -1.3767051696777344 2 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 1.7422754331352037 0.46608156381052757 1 S 1 -1 3.9794 0 0 0.30526 0 0 87.12592375667016 1126.4363497369752 1213.5622734936453 0 0 0 0 0 0 0 0 0 S 0.30526 - 1 + NaN NaN 88453 NaN 1491 1526 3017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3020 25.601 NaN 32789 35 0 5515.9 0.261 -1 0 19 476.1982712911341 475.19099482453413 1 476.19842529296875 MULTI HCD FTMS 0 0 0 3017 13592.81640625 0.35720909787831967 -139 1.6768608093261719 3 NaN NaN 1 A{M(Oxidation (M))|F} 2 -1 20.969 0 0 4.4128 0 0 239.10879375207162 0 239.10879375207162 0 20.969100130080562 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 4.4128 - 5 + NaN NaN 79195.3 NaN 1492 1526 3017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3021 25.604 NaN 25118 35 0 5189 0.261 -1 PFFLVMPID 9 20 547.7829498385782 1093.5513467439564 2 547.7830200195312 MULTI HCD FTMS 0 0 0 3017 11322.03515625 0.8702087350049377 -9 0.11333847045898438 4 Oxidation (M) _PFFLVM(Oxidation (M))PID_ nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A 0.6014990680409731 0.3464572424761564 1 C 1 -1 0.9691 0 0 0.08862 0 0 700.2278431812596 287.29844080142817 987.5262839826878 0 0 0 0 0 0 0 0 0 C 0.08862 - 1 + NaN NaN 90810.6 NaN 1493 1526 3017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3022 25.607 NaN 41383 35 0 5295.8 0.261 + -1 EIPCRCLK 8 30 509.7617413936124 1017.5089298540248 2 509.76092529296875 MULTI HCD FTMS 0 0 0 3017 7296.19677734375 0.21296818303922446 9 -0.118011474609375 5 Carbamidomethyl (C) _EIPC(Carbamidomethyl (C))RCLK_ REV__ENST00000389385.8_1_12:113335508-113335769:+|nuORF 2.302733041254933 0.5385759549224092 1 K 1 -1 2.4743 0 0 0.24317 0 0 526.763795431953 359.6372469537719 886.4010423857248 0 0 0 0 0 0 0 0 0 K 0.24317 + + 6 + NaN NaN 101390.7 NaN 1494 1526 3017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3023 25.611 NaN 18949 35 0 3646.4 0.261 -1 VMCWRGHPF 9 22 574.7612684939206 NaN 0 574.7610473632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _VM(Oxidation (M))CWRGHPF_ ENSG00000169371|ENST00000308588|SNUPN 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104535.1 NaN 1495 1526 3017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3025 25.616 NaN 730420 35 0 46936 0.327 + 9533 HRDYETATL 9 89 553.2672343400287 1104.5199157468574 2 553.755615234375 MULTI HCD FTMS 0 0 0 3024 64718.765625 0.022258601813636026 62 -0.7607917785644531 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 24.020572477871973 0.15282392193088168 1 [PS]EEKQCA 8 8 54.273 0 0 4.9137 0 0 0 229.11826397351186 229.11826397351186 9.107281392838829 0 0 0 0 0.3494850021680094 1.5228787452803376 1.6610892374447828 0 [PS]EEKQCA 4.9137 - 1939 NaN NaN 189279.6 NaN 1496 1527 3024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3026 25.621 NaN 16677 35 0 4918.9 0.261 -1 LCYKKYLSY 9 13 619.3173217773438 NaN 0 619.3173217773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))YKKYLSY_ tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90695.9 NaN 1497 1527 3024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3028 25.626 NaN 65665 35 0 7679.1 0.327 + 13009 KYIQRQQTI 9 27 589.3381854866541 1176.661818040108 2 589.3380126953125 MULTI HCD FTMS 0 0 0 3027 53961.375 0.8917950933075175 -1 0.010158538818359375 1 Unmodified _KYIQRQQTI_ ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF 13.614867670302875 0.2427269026982664 1 KY{I|L}QR 5 4 31.058 0 0 2.6395 0 0 0 485.23310266666255 485.23310266666255 31.057743964882718 0 0 0 0 0 0 0 0 + KY{I|L}QR 2.6395 + + 14 + NaN NaN 91474.6 NaN 1498 1528 3027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3029 25.631 NaN 54953 35 0 10349 0.261 + 8801 HINHDDPSL 9 24 524.2461295060384 1046.4777060788767 2 524.2459716796875 MULTI HCD FTMS 0 0 0 3027 30314.4140625 0.3207235231139031 12 -0.1531543731689453 2 Unmodified _HINHDDPSL_ ENSG00000085872|ENST00000546361|CHERP 13.042465956692817 0.2476723265019929 1 T 1 9 5.4846 0 0 0.5241 0 0 149.10624798214354 793.3131197565061 942.4193677386497 0 0 0 0 0 0 0 0 0 T 0.5241 - 1 + NaN NaN 90967.4 NaN 1499 1528 3027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3030 25.634 NaN 53221 35 0 10772 0.261 + 19502 NREWQNPL 8 29 528.764767141177 1055.514981349154 2 528.7650756835938 MULTI HCD FTMS 0 0 0 3027 17104.587890625 0.09008737093944055 32 -0.40824317932128906 3 Unmodified _NREWQNPL_ REV__ENSG00000204740|ENST00000454679|MALRD1 11.640296217721598 0.50814828952472 1 Y[HA][NP]{I|L} 6 -1 12.152 0 0 1.1513 0 0 342.19014174629064 0 342.19014174629064 0 12.152274865413732 0 0 0 0 0 0 0.4247425010840047 Y[HA][NP]{I|L} 1.1513 - 4 NaN NaN 92652.3 NaN 1500 1528 3027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3032 25.64 NaN 72588 35 0 7667.6 0.327 + -1 LDSCKLSEM 9 33 541.7466312402498 1081.4787095472996 2 541.7467041015625 MULTI HCD FTMS 0 0 0 3031 23878.595703125 0.7233400236943383 -7 0.09582328796386719 1 Carbamidomethyl (C) _LDSC(Carbamidomethyl (C))KLSEM_ REV__ENSG00000196357|ENST00000304116|ZNF565;REV__nc|ENSG00000196357|Q8N9K5|ZNF565 9.38312468134398 0.279288223203164 1 {NN|[MP]|[D{I|L}]|[EV]}YSG 5 -1 54.961 0 0 5.082 0 0 0 543.2305391900999 543.2305391900999 54.9607625286837 0 0 0 0 1.4247425010840047 2 0 0 {NN|[MP]|[D{I|L}]|[EV]}YSG 5.082 - 18 + NaN NaN 89219.3 NaN 1501 1529 3031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3033 25.644 NaN 71959 35 0 11718 0.261 + 25918 SPAEGSERL 9 36 473.23540696868605 944.4562610041721 2 473.235107421875 MULTI HCD FTMS 0 0 0 3031 29330.9375 0.2844314473437491 -7 0.09582328796386719 2 Unmodified _SPAEGSERL_ ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S 22.65808497894818 0.16459551161911185 1 SPAEG 5 4 58.465 0 0 6.1904 0 0 0 500.2472323053344 500.2472323053344 58.465174265493275 0 0 0 0 1.3494850021680094 1.2218487496163564 0 0 + SPAEG 6.1904 + + 30 + NaN NaN 99256.6 NaN 1502 1529 3031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3035 25.65 NaN 38241 35 0 6572.1 0.327 + 20596 PELSQVHR 8 27 483.26188427572185 964.5092156182437 2 483.2616271972656 MULTI HCD FTMS 0 0 0 3034 20343.810546875 0.030951510181970565 52 -0.6421241760253906 1 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 2.302733041254933 0.5385759549224092 1 V[RH] 3 -1 10.458 0 0 1.0842 0 0 554.2705204051563 0 554.2705204051563 0 4.9730248405664685 0 0 0 0 0 0 0 V[RH] 1.0842 + + 6 + NaN NaN 81035 NaN 1503 1530 3034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3036 25.654 NaN 45649 35 0 4184 0.261 + 21743 QAEGRNPTL 9 32 493.25653469727854 984.4985164613571 2 493.2561950683594 MULTI HCD FTMS 0 0 0 3034 17913.466796875 0.6090115862131978 -1 0.010150909423828125 2 Unmodified _QAEGRNPTL_ ENSG00000020129|ENST00000373243|NCDN;nc|ENSG00000020129|Q9UBB6-2|NCDN;NCDN|p.E37K|1|0.21|ENSG00000020129|chr1:35559182-35559182|G/A|missense_variant 3.2813086475875832 0.32614229037259 1 [QA]E 3 6 10.458 0 0 1.0622 0 0 0 653.3369845025999 653.3369845025999 7.3586311141647816 0 0 0 0 0 0 0 0 + [QA]E 1.0622 + + 3 + NaN NaN 101073.2 NaN 1504 1530 3034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3037 25.657 NaN 39059 35 0 8570.4 0.261 -1 EGFLFVCLF 9 15 566.2815115475706 1130.5484701619412 2 566.28125 MULTI HCD FTMS 0 0 0 3034 5943.322265625 0.404528810062368 7 -0.07946205139160156 3 Carbamidomethyl (C) _EGFLFVC(Carbamidomethyl (C))LF_ ENST00000352432.8_2_3:10370089-10370329:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85130.1 NaN 1505 1530 3034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3040 25.671 NaN 91723 35 0 13091 0.327 + 11832 KENDAPVLK 9 33 507.2849786333182 1012.5554043334364 2 507.28472900390625 MULTI HCD FTMS 0 0 0 3039 47011.5625 0.41022923897400015 12 -0.1605091094970703 1 Unmodified _KENDAPVLK_ REV__ENSG00000150768|ENST00000280346|DLAT;REV__ENST00000527231.1_1_11:111931791-111931899:+|nuORF;REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF 8.745405648335112 0.2847203663274469 1 V 1 -1 11.99 0 0 1.1841 0 0 259.18962184483627 651.2754090019521 910.4650308467883 0 0 0 0 0 0.5 0 0 0 V 1.1841 + + 6 + NaN NaN 90315.8 NaN 1506 1532 3039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3041 25.675 NaN 46786 35 0 6524 0.261 -1 TAVKNDYEM 9 17 543.7423522136379 1085.4701514940757 2 543.741943359375 MULTI HCD FTMS 0 0 0 3039 25270.62109375 0.10772255662675126 71 -0.9017124176025391 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 8.155526934196011 0.2891920862272901 1 E{M(Oxidation (M))|F} 2 -1 23.583 0 0 2.1727 0 0 791.3810291974625 0 791.3810291974625 0 14.631068929195406 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.1727 + + 5 NaN NaN 79145.8 NaN 1507 1532 3039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3042 25.678 NaN 45689 35 0 9432.8 0.262 -1 YCCRLVEMDSK 11 19 454.86701946669484 NaN 0 454.8670349121094 PEAK HCD FTMS 0 0 0 3039 11809.421875 0.6045273584436882 -26 0.34529685974121094 3 Oxidation (M) _YCCRLVEM(Oxidation (M))DSK_ ENSG00000198677|ENST00000358746|SKIC3;ENST00000503279.1_1_5:94864675-94872608:-|nuORF 0.40826533853263924 0.34096201227758716 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81409.4 NaN 1508 1532 3039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3044 25.684 NaN 44817 35 0 6363.7 0.327 -1 QPDEEPMDM 9 21 562.1994252385492 NaN 0 562.1991577148438 PEAK HCD FTMS 0 0 0 3043 17713.9453125 0.6438039599146047 11 -0.14725685119628906 1 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 10.073929032068715 0.24642998803896465 1 N 1 -1 3.9794 0 0 0.35455 0 0 579.6030608269047 425.71357141666255 1005.3166322435673 0 0 0 0 0 0 0 0 0 N 0.35455 - 1 + NaN NaN 78149.6 NaN 1509 1533 3043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3045 25.688 NaN 40400 35 0 6857.1 0.261 + 32646 WMMGLNQGL 9 19 525.248115504277 NaN 0 525.2647094726562 PEAK HCD FTMS 0 0 0 3043 1741.30322265625 0.3964034132459973 -4 0.044403076171875 2 Unmodified _WMMGLNQGL_ REV__ENSG00000073670|ENST00000200557|ADAM11;REV__nc|ENSG00000073670|O75078-2|ADAM11 1.844237919475145 0.28630992268396543 1 T 1 -1 4.6041 0 0 0.43912 0 0 404.12280463961025 540.2893770807249 944.4121817203352 0 0 0 0 0 0 0 0 0 T 0.43912 - 2 + NaN NaN 81877.1 NaN 1510 1533 3043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3046 25.692 NaN 35841 35 0 11069 0.261 -1 0 17 498.2488107860372 1988.9661372777489 4 498.2486572265625 MULTI HCD FTMS 0 0 0 3043 13116.193359375 0.6754556653863284 -8 0.09930610656738281 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94029 NaN 1511 1533 3043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3048 25.697 NaN 86936 35 0 15258 0.327 + 26474 STVGSAISR 9 23 439.2405488160625 876.4665446989251 2 439.2403564453125 MULTI HCD FTMS 0 0 0 3047 48136.40234375 0.6160805838500535 3 -0.03173637390136719 1 Unmodified _STVGSAISR_ ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 12.872603262515298 0.2491399024913319 1 {[MG]|[TS]}VGSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 34.332 0 0 3.917 3.917 82.725 0 0 0 34.331524890261 5.6424927368726046 5.6424927368726046 6.47817481888638 0 0.5 0 0 0 + + {[MG]|[TS]}VGSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MG]|[TS]}RSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MG]|[TS]}V{[QS]|[NT]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 3.917;3.1779;1.9264 +;-;- + 33 + NaN NaN 89091.6 NaN 1512 1534 3047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3049 25.702 NaN 43833 35 0 6044.1 0.261 + 21736 QADSQSPKL 9 32 487.25115231081503 972.4877516884301 2 487.2510070800781 MULTI HCD FTMS 0 0 0 3047 24128.279296875 0.7844257161166146 4 -0.04834556579589844 2 Unmodified _QADSQSPKL_ ENSG00000167207|ENST00000647318|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;nc|ENSG00000167207|Q9HC29|NOD2 3.5964929083625545 0.32375295897743744 1 SP[K{I|L}] 4 5 7.167 0 0 0.73697 0 0 529.2141748835458 0 529.2141748835458 0 7.1669877129645 0 0 0 0 0 0 0 + SP[K{I|L}] 0.73697 + + 7 + NaN NaN 87549 NaN 1513 1534 3047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3050 25.705 NaN 44525 35 0 11897 0.261 -1 0 26 469.32864488262436 468.32136841602437 1 469.32861328125 MULTI HCD FTMS 0 0 0 3047 13921.2421875 0.5481302203740528 -30 0.3895282745361328 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90214.9 NaN 1514 1534 3047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3052 25.711 NaN 66389 35 0 11007 0.411 + 5536 FLEKHFSQAP 10 33 401.8778357069083 NaN 0 401.8776550292969 PEAK HCD FTMS 0 0 0 3051 10775.3173828125 0.15234497709369868 751 -16.161592483520508 1 Unmodified _FLEKHFSQAP_ REV__ENSG00000055609|ENST00000262189|KMT2C;REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;REV__KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C;REV__nc|ENSG00000055609|Q8NEZ4-3|KMT2C 1.3295316138638542 0.339046394236575 1 H 1 -1 3.0989 0 0 0.38653 0 0 514.7196168710448 146.93567835025627 661.655295221301 0 0 0 0 0 0 0 0 0 H 0.38653 + + 1 + NaN NaN 94022 NaN 1515 1535 3051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3054 25.719 NaN 66492 35 0 11354 0.327 + -1 LDSCKLSEM 9 24 541.7466312402498 1081.4787095472996 2 541.7320556640625 MULTI HCD FTMS 0 0 0 3053 33011.578125 1 0 0 1 Carbamidomethyl (C) _LDSC(Carbamidomethyl (C))KLSEM_ REV__ENSG00000196357|ENST00000304116|ZNF565;REV__nc|ENSG00000196357|Q8N9K5|ZNF565 6.2057823575117 0.30397260197431997 1 {NN|[MP]|[D{I|L}]|[EV]}YS 4 -1 44.45 0 0 4.1102 0 0 0 600.2495821588499 600.2495821588499 44.45046257204389 0 0 0 0 0.8252574989159953 2 0 0 {NN|[MP]|[D{I|L}]|[EV]}YS 4.1102 - 7 + NaN NaN 85500.4 NaN 1516 1536 3053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3055 25.723 NaN 77677 35 0 14095 0.263 + -1 IYNMFILIR 9 36 400.2271231168713 NaN 0 400.3498840332031 PEAK HCD FTMS 0 0 0 3053 1746.079345703125 1 0 0 2 Oxidation (M) _IYNM(Oxidation (M))FILIR_ REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF 0.235843874597859 0.29410397576755687 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92417.6 NaN 1517 1536 3053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3057 25.729 NaN 161090 35 0 14186 0.327 + 26053 SPETRENAL 9 58 508.75397034998247 1015.493387766765 2 508.7538146972656 MULTI HCD FTMS 0 0 0 3056 75646.4375 0.46641240906572085 -5 0.05846214294433594 1 Unmodified _SPETRENAL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 27.223235318498237 0.1251536255799991 1 HENA{I|L} 5 5 29.909 0 0 2.9453 0 0 433.2235279767594 0 433.2235279767594 0 7.435012637084171 0 0 0 0 0 0 0.4247425010840047 HENA{I|L} 2.9453 - 132 NaN NaN 114469.2 NaN 1518 1537 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3058 25.733 NaN 46666 35 0 5629.6 0.261 + 21889 QDEILAHR 8 31 491.25914955881217 980.5037461844244 2 491.2588806152344 MULTI HCD FTMS 0 0 0 3056 15715.8125 0.006852753752168355 149 -1.9380741119384766 2 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 2.302733041254933 0.5385759549224092 1 V[RH] 3 6 10.458 0 0 1.0666 0 0 570.2643376946993 0 570.2643376946993 0 10.45757490560675 0 0 0 0 0 0 0 V[RH] 1.0666 - 5 + NaN NaN 97494.2 NaN 1519 1537 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3059 25.737 NaN 23209 35 0 4703.1 0.261 + 24000 RWCILWFA 8 16 547.7829498385782 1093.5513467439564 2 547.782958984375 MULTI HCD FTMS 0 0 0 3056 9060.1708984375 0.6963624249219524 2 -0.03676795959472656 3 Unmodified _RWCILWFA_ REV__ENST00000554981.1_1_14:57060026-57070625:+|nuORF;REV__ENST00000556422.5_1_14:57052576-57070625:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93528.8 NaN 1520 1537 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3060 25.74 NaN 44577 35 0 11111 0.261 -1 YCLARLMA 8 37 478.73766970539015 NaN 0 478.73797607421875 PEAK HCD FTMS 0 0 0 3056 9686.1044921875 0.2058015131910387 13 -0.16692161560058594 4 Oxidation (M) _YCLARLM(Oxidation (M))A_ ENSG00000137825|ENST00000260386|ITPKA 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87116.1 NaN 1521 1537 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3062 25.746 NaN 336420 35 0 20349 0.327 + 9534 HRDYETATL 9 56 553.2672343400287 1104.5199157468574 2 553.7553100585938 MULTI HCD FTMS 0 0 0 3061 64331.3828125 0.022125369980648887 73 -0.9435501098632812 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 17.11289562659939 0.2125047172822487 1 [PS]EEKQCA 8 8 42.634 0 0 3.86 0 0 0 229.11955140669423 229.11955140669423 7.464825806156256 0 0 0 0 0.7134679910804405 0 1.2302046884880937 0 [PS]EEKQCA 3.86 - 513 NaN NaN 131036 NaN 1522 1538 3061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3063 25.75 NaN 93790 35 0 17793 0.263 + 29814 VENWEEDDGR 10 34 416.8423558421197 NaN 0 416.8423156738281 PEAK HCD FTMS 0 0 0 3061 21208.60546875 0.12760814604602522 1100 -25.770458221435547 2 Unmodified _VENWEEDDGR_ REV__ENSG00000135372|ENST00000257829|NAT10;REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94442.4 NaN 1523 1538 3061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3064 25.754 NaN 43126 35 0 4603.5 0.261 -1 MDSSQPER 8 27 483.2031930169631 NaN 0 483.2199401855469 PEAK HCD FTMS 0 0 0 3061 3241.240234375 0.8595992954146594 6 -0.08543777465820312 3 Oxidation (M) _M(Oxidation (M))DSSQPER_ ENSG00000168556|ENST00000302327|ING2;nc|ENSG00000168556|Q9H160-2|ING2 1.844237919475145 0.38822285293237185 1 SDAA 4 -1 17.167 0 0 1.7801 0 0 262.0652472626387 355.17304407291255 617.2382913355513 0 0 0 0 0 0 0 0 0 SDAA 1.7801 - 18 + NaN NaN 98317.7 NaN 1524 1538 3061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3065 25.757 NaN 41824 35 0 10197 0.261 -1 0 23 566.2808763659344 565.2735998993344 1 566.2801513671875 MULTI HCD FTMS 0 0 0 3061 8461.1171875 0.17895602773643857 -13 0.16112518310546875 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86018.9 NaN 1525 1538 3061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3066 25.76 NaN 36018 35 0 11185 0.261 + -1 HCEHQEYP 8 16 550.2170427849297 NaN 0 550.2163696289062 PEAK HCD FTMS 0 0 0 3061 9790.705078125 0.6328878821167583 -76 0.9613742828369141 5 Carbamidomethyl (C) _HC(Carbamidomethyl (C))EHQEYP_ REV__ENSG00000165029|ENST00000374736|ABCA1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88875.9 NaN 1526 1538 3061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3068 25.766 NaN 304370 35 0 23699 0.327 + 9535 HRDYETATL 9 54 553.2672343400287 1104.5199157468574 2 553.2671508789062 MULTI HCD FTMS 0 0 0 3067 107954.109375 0.02187181565222888 74 -0.9503650665283203 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 18.1463463914782 0.20357593197100715 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YEA 7 6 24.085 0 0 2.1806 0 0 0 229.11933234837355 229.11933234837355 -1.5768993510180707 0 -1.5768993510180707 0 0 0.805462187404089 0 1.305462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YEA 2.1806 - 277 NaN NaN 128580.6 NaN 1527 1539 3067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3069 25.77 NaN 43306 35 0 5845 0.261 + 13106 KYLERLKNN 9 25 589.3381854866541 1176.661818040108 2 589.33837890625 MULTI HCD FTMS 0 0 0 3067 15619.251953125 0.25813227059041277 10 -0.12207984924316406 2 Unmodified _KYLERLKNN_ ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3 2.9952420565917617 0.3283108881486655 1 KY{I|L} 3 6 24.693 0 0 2.0985 0 0 0 769.3936251275999 769.3936251275999 20.713337517843655 0 0 0 0 0 0 0 0 + KY{I|L} 2.0985 + + 5 + NaN NaN 91797.8 NaN 1528 1539 3067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3070 25.774 NaN 32724 35 0 11295 0.261 + 19503 NREWQNPL 8 19 528.764767141177 1055.514981349154 2 528.7645874023438 MULTI HCD FTMS 0 0 0 3067 13238.9853515625 0.06972780588778342 43 -0.5258941650390625 3 Unmodified _NREWQNPL_ REV__ENSG00000204740|ENST00000454679|MALRD1 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89739.1 NaN 1529 1539 3067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3072 25.78 NaN 113230 35 0 20438 0.327 + 25919 SPAEGSERL 9 35 473.23540696868605 944.4562610041721 2 473.2352294921875 MULTI HCD FTMS 0 0 0 3071 62511.140625 0.6061904500351338 4 -0.051769256591796875 1 Unmodified _SPAEGSERL_ ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S 38.61474834105838 0.07170385841135779 1 SPAEG 5 4 66.186 0 0 7.0078 0 0 0 500.24701868228755 500.24701868228755 60.70107520596089 0 0 0 0 1.4247425010840047 1.3979400086720375 0 0 + SPAEG 7.0078 + + 31 + NaN NaN 93967.6 NaN 1530 1540 3071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3073 25.784 NaN 38809 35 0 5361.7 0.261 + 14015 KYTNRPTKAV 10 19 589.3381854866541 1176.661818040108 2 589.3375854492188 MULTI HCD FTMS 0 0 0 3071 14604.095703125 0.24135524512190942 11 -0.12991714477539062 2 Unmodified _KYTNRPTKAV_ REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;REV__ENSG00000148773|ENST00000368654|MKI67;REV__nc|ENSG00000148773|P46013-2|MKI67 2.498486711656943 0.462078817294651 1 KY 2 -1 20.969 0 0 1.7821 0 0 0 882.4821261041624 882.4821261041624 15.484550065040281 0 0 0 0 0 0 0 0 KY 1.7821 + + 2 + NaN NaN 81591.5 NaN 1531 1540 3071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3074 25.787 NaN 32392 35 0 4240 0.262 + 6653 FPMVYCIL 8 26 493.24651793031967 NaN 0 493.25616455078125 PEAK HCD FTMS 0 0 0 3071 1191.453857421875 0.6328061067498653 -1 0.013509750366210938 3 Unmodified _FPMVYCIL_ ENSG00000177669|ENST00000320542|MBOAT4;nc|ENSG00000177669|Q96T53-2|MBOAT4 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80198.7 NaN 1532 1540 3071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3075 25.791 NaN 53891 35 0 8179.5 0.261 -1 EGEDEHPQC 9 32 550.7015913405394 1099.3886297478787 2 550.7022705078125 MULTI HCD FTMS 0 0 0 3071 7404.51953125 0.358660607998014 -12 0.1531543731689453 4 Carbamidomethyl (C) _EGEDEHPQC(Carbamidomethyl (C))_ ENSG00000104972|ENST00000324602|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000131042|ENST00000314446|LILRB2;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104974|O75019-2|LILRA1;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92934.8 NaN 1533 1540 3071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3077 25.796 NaN 21970 35 0 5368 0.411 + 2286 DLQNTELQR 9 31 558.7855083751997 1115.5564638171993 2 558.7857055664062 MULTI HCD FTMS 0 0 0 3076 5866.50146484375 0.2429413994672782 -9 0.12553024291992188 1 Unmodified _DLQNTELQR_ REV__ENSG00000196642|ENST00000311502|RABL6;REV__ENST00000435930.1_1_9:139730112-139730415:+|nuORF;REV__ENST00000466096.5_1_9:139726444-139730415:+|nuORF;REV__nc|ENSG00000196642|Q3YEC7-2|RABL6;REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 6.2057823575117 0.30397260197431997 1 {I|L}QR 3 -1 23.188 0 0 2.0786 0 0 700.301441699815 0 700.301441699815 0 17.703037561203843 0 0 0 0 0 0 0 {I|L}QR 2.0786 + + 15 + NaN NaN 85372.3 NaN 1534 1541 3076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3079 25.804 NaN 60222 35 0 8850 0.327 -1 TAVKNDYEM 9 26 543.7423522136379 1085.4701514940757 2 543.7420043945312 MULTI HCD FTMS 0 0 0 3078 18649.234375 0.07949718364869754 81 -1.0666770935058594 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 5.296884461304476 0.3108627248283497 1 V[PG] 3 -1 13.2 0 0 1.216 0 0 814.3175526349625 0 814.3175526349625 0 13.19984993812689 0 0 0 0.4247425010840047 0 0 0 V[PG] 1.216 - 8 NaN NaN 107857.3 NaN 1535 1542 3078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3080 25.809 NaN 39111 35 0 6377.5 0.262 + -1 GPLTRLCLTMM 11 23 436.887247255421 NaN 0 436.8792724609375 PEAK HCD FTMS 0 0 0 3078 3481.5595703125 0.6967162680450187 -5 0.07530975341796875 2 Carbamidomethyl (C),Oxidation (M) _GPLTRLC(Carbamidomethyl (C))LTM(Oxidation (M))M_ REV__ENST00000269260.6_1_17:4623925-4624293:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97558.4 NaN 1536 1542 3078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3081 25.812 NaN 35635 35 0 5590.6 0.261 -1 QPDEEPMDM 9 20 562.1994252385492 NaN 0 562.1993408203125 PEAK HCD FTMS 0 0 0 3078 9315.16796875 0.3385548458998007 20 -0.2603111267089844 3 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 10.073929032068715 0.24642998803896465 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106759.4 NaN 1537 1542 3078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3082 25.816 NaN 60140 35 0 9604.3 0.261 -1 EGEDEHPQC 9 34 550.7015913405394 1099.3886297478787 2 550.7018432617188 MULTI HCD FTMS 0 0 0 3078 6069.97119140625 0.2940176670278393 -10 0.1337718963623047 4 Carbamidomethyl (C) _EGEDEHPQC(Carbamidomethyl (C))_ ENSG00000104972|ENST00000324602|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000131042|ENST00000314446|LILRB2;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104974|O75019-2|LILRA1;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2 3.944395688203298 0.32111559684428237 1 [C(Carbamidomethyl (C))H][{I|L}V][C(Carbamidomethyl (C))D][C(Carbamidomethyl (C))H] 8 -1 + 0 0 0 0 0 39.275 0 0 0 0 0 0 0 0 0.5 0 0 0 [C(Carbamidomethyl (C))H][{I|L}V][C(Carbamidomethyl (C))D][C(Carbamidomethyl (C))H] 0 - 4 NaN NaN 99213.4 NaN 1538 1542 3078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3084 25.821 NaN 35804 35 0 11449 0.327 + 14643 LGESKEHPR 9 17 526.7778211829615 NaN 0 526.7777099609375 PEAK HCD FTMS 0 0 0 3083 11016.7880859375 0.9180757601096692 1 -0.01013946533203125 1 Unmodified _LGESKEHPR_ ENSG00000161860|ENST00000293695|SYCE2 1.4819007175156935 0.28806575819904134 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89223.7 NaN 1539 1543 3083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3085 25.826 NaN 34308 35 0 11817 0.261 -1 0 17 498.2488107860372 1988.9661372777489 4 498.2488708496094 MULTI HCD FTMS 0 0 0 3083 10275.7626953125 0.529179613210967 2 -0.023443222045898438 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89063.5 NaN 1540 1543 3083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3087 25.831 NaN 23914 35 0 5484.8 0.327 + 4275 EVIQNEPNI 9 16 528.2723347471313 1054.5301165610624 2 528.2711791992188 MULTI HCD FTMS 0 0 0 3086 14061.9375 0.5580225185044181 -5 0.06527900695800781 1 Unmodified _EVIQNEPNI_ REV__ENSG00000160584|ENST00000445177|SIK3;REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3;REV__nc|ENSG00000160584|Q9Y2K2-8|SIK3;REV__nc|ENSG00000160584|Q9Y2K2|SIK3 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85689.8 NaN 1541 1544 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3088 25.836 NaN 20880 35 0 5680.3 0.261 + 20637 PFEYFIMAM 9 20 574.7612684939206 NaN 0 574.7605590820312 PEAK HCD FTMS 0 0 0 3086 2018.0283203125 0.2643299872648487 16 -0.20331954956054688 2 Unmodified _PFEYFIMAM_ ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000148408|Q00975-2|CACNA1B 0 0.29524684227089293 1 E 1 8 3.4949 0 0 0.30456 0 0 789.4247148669443 226.01149927310783 1015.4362141400521 0 0 0 0 0 0 0 0 0 + E 0.30456 + + 2 + NaN NaN 100667.7 NaN 1542 1544 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3089 25.839 NaN 33191 35 0 12202 0.261 + 14290 LDDRKRYE 8 23 547.7829498385782 1093.5513467439564 2 547.7830200195312 MULTI HCD FTMS 0 0 0 3086 4527.7705078125 0.34800328665479896 9 -0.11835670471191406 3 Unmodified _LDDRKRYE_ REV__ENST00000514089.5_1_17:47007839-47013524:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93140.5 NaN 1543 1544 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3091 25.845 NaN 52254 35 0 5635.6 0.327 -1 RYMPPAHRNF 10 26 435.54865661797754 1303.6241404541327 3 435.8833312988281 MULTI HCD FTMS 0 0 0 3090 12873.23828125 0.161124893672841 123 -1.6576423645019531 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93723.2 NaN 1544 1545 3090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3092 25.849 NaN 42965 35 0 11549 0.261 + -1 NYQFMYPM 8 22 563.222203754741 1124.429854576282 2 563.2221069335938 MULTI HCD FTMS 0 0 0 3090 10997.083984375 0.5461007696999752 -1 0.013303756713867188 2 2 Oxidation (M) _NYQFM(Oxidation (M))YPM(Oxidation (M))_ REV__ENST00000438477.2_1_1:120039232-120039448:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88906.4 NaN 1545 1545 3090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3094 25.855 NaN 243900 35 0 15460 0.327 + 26054 SPETRENAL 9 65 508.75397034998247 1015.493387766765 2 508.75384521484375 MULTI HCD FTMS 0 0 0 3093 115072.8515625 0.7095034173331392 4 -0.041423797607421875 1 Unmodified _SPETRENAL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 47.7319792270244 0.034743597693959835 1 QENA{I|L} 5 5 34.249 0 0 3.3726 0 0 442.22798354316564 0 442.22798354316564 0 3.70990169812492 0 0 0 0 0 0 1.1307196863200843 QENA{I|L} 3.3726 - 200 NaN NaN 114764.6 NaN 1546 1546 3093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3095 25.859 NaN 41864 35 0 4440.5 0.261 + 23081 REKKYNSG 8 22 491.25914955881217 980.5037461844244 2 491.2593688964844 MULTI HCD FTMS 0 0 0 3093 14530.0859375 0.0063357272128012326 158 -2.104236602783203 2 Unmodified _REKKYNSG_ tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 2.302733041254933 0.5385759549224092 1 V[RH] 3 8 8.9524 0 0 0.91304 0 0 570.2655087350088 0 570.2655087350088 0 4.348331157524969 0 0 0 0 0 0 0 V[RH] 0.91304 - 4 + NaN NaN 92344.9 NaN 1547 1546 3093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3096 25.862 NaN 81524 35 0 12853 0.262 + 20488 PCPSAQFQVVK 11 39 401.8778357069083 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 3093 7565.1943359375 0.10695920285894675 762 -16.654417037963867 3 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 1.1933415558491238 0.338734977139133 1 H 1 -1 5.4846 0 0 0.68408 0 0 514.7192506601073 146.9420565240844 661.6613071841916 0 0 0 0 0 0 0 0 0 H 0.68408 - 2 + NaN NaN 103836.5 NaN 1548 1546 3093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3098 25.868 NaN 15642 35 0 5856.6 0.327 + -1 RWCCAAPWP 9 11 602.2636184582785 1202.512683983357 2 602.2635498046875 MULTI HCD FTMS 0 0 0 3097 11129.302734375 0.673382804368111 -4 0.046855926513671875 1 2 Carbamidomethyl (C) _RWC(Carbamidomethyl (C))C(Carbamidomethyl (C))AAPWP_ REV__LTB4R2|p.Q122Hfs*93|1|0.1|ENSG00000213906|chr14:24310934-24310935|-/CA|frameshift_variant 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83747.8 NaN 1549 1547 3097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3099 25.872 NaN 19616 35 0 5749 0.261 + -1 NWPMHRCM 8 14 582.2301792750204 NaN 0 582.2305297851562 PEAK HCD FTMS 0 0 0 3097 5345.07421875 0.6687748872730018 -1 0.013265609741210938 2 Carbamidomethyl (C),2 Oxidation (M) _NWPM(Oxidation (M))HRC(Carbamidomethyl (C))M(Oxidation (M))_ REV__ENSG00000106483|ENST00000436072|SFRP4;REV__SFRP4|p.I29V|1|0.17|ENSG00000106483|chr7:37916453-37916453|T/C|missense_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85134.3 NaN 1550 1547 3097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3101 25.878 NaN 48181 35 0 5428.1 0.327 + 5055 FDSDAASPR 9 30 483.22005234594445 964.4255517586889 2 483.2197265625 MULTI HCD FTMS 0 0 0 3100 26869.83203125 0.8419499762268625 8 -0.09964752197265625 1 Unmodified _FDSDAASPR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000484378.1_1_6:31239370-31239848:-|nuORF;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 33.4449034751529 0.0954363425218424 1 AADSP{M(Oxidation (M))|F} 6 6 41.916 0 0 4.3462 0 0 358.19578749824376 0 358.19578749824376 0 24.926609503452184 0 0 0 2.004432191740108 0 0.4247425010840047 0 AADSP{M(Oxidation (M))|F} 4.3462 - 31 NaN NaN 80630.8 NaN 1551 1548 3100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3102 25.882 NaN 110410 35 0 14302 0.261 -1 LLFPKTFC 8 26 505.77246882940915 1009.5303847256183 2 505.77239990234375 MULTI HCD FTMS 0 0 0 3100 11423.091796875 0.8353994817446877 45 -0.5380516052246094 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLFPKTFC_ ENST00000566111.5_1_1:158969856-158969946:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 101311.6 NaN 1552 1548 3100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3104 25.888 NaN 236350 35 0 20067 0.412 + 9536 HRDYETATL 9 69 553.2672343400287 1104.5199157468574 2 553.2672729492188 MULTI HCD FTMS 0 0 0 3103 94905.171875 0.019228063069675037 84 -1.113250732421875 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 27.628801355627647 0.12213550946336599 1 YEAT{I|L} 5 4 47.423 0 0 4.2935 0 0 509.2319508283219 0 509.2319508283219 0 9.441198271601436 0 0 0 0.4247425010840047 0 1.4247425010840047 0 YEAT{I|L} 4.2935 - 713 NaN NaN 164050.8 NaN 1553 1549 3103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3106 25.896 NaN 45556 35 0 5324.3 0.327 + -1 NYCTKSCMM 9 32 409.4812772138704 1225.4220022418112 3 409.48126220703125 MULTI HCD FTMS 0 0 0 3105 32094.03125 1 0 0 1 2 Carbamidomethyl (C),2 Oxidation (M) _NYC(Carbamidomethyl (C))TKSC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000100473|ENST00000396618|COCH;REV__nc|ENSG00000100473|O43405-2|COCH 0.9622753412299311 0.3437222896773173 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 92494.7 NaN 1554 1550 3105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3107 25.9 NaN 26297 35 0 4963.9 0.261 + -1 HVMPVRFC 8 19 531.2541394870264 1060.4937260408526 2 531.253662109375 MULTI HCD FTMS 0 0 0 3105 9701.06640625 0.6349037903222456 -3 0.028158187866210938 2 Carbamidomethyl (C),Oxidation (M) _HVM(Oxidation (M))PVRFC(Carbamidomethyl (C))_ REV__ENSG00000167123|ENST00000372838|CERCAM;REV__ENST00000483893.5_1_9:131186485-131189983:+|nuORF;REV__nc|ENSG00000167123|Q5T4B2-2|CERCAM 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77413.8 NaN 1555 1550 3105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3108 25.904 NaN 36907 35 0 6930.9 0.261 -1 IALVPPCST 9 25 479.2589111328125 NaN 0 479.2589111328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _IALVPPC(Carbamidomethyl (C))ST_ ENSG00000139132|ENST00000534526|FGD4;ENST00000550091.5_1_12:32552793-32734916:+|nuORF 0.5247636613948944 0.2927039108006614 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.32399 0 0 585.9747264142594 220.4298037164672 806.4045301307266 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.32399 - 1 + NaN NaN 84962.9 NaN 1556 1550 3105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3110 25.909 NaN 52707 35 0 10218 0.327 + 10350 ILSTFSPTSHS 11 20 588.7987191761127 1175.5828854190254 2 588.7984619140625 MULTI HCD FTMS 0 0 0 3109 23148.328125 0.6671304104267369 3 -0.05034828186035156 1 Unmodified _ILSTFSPTSHS_ REV__ENSG00000169894|ENST00000379458|MUC3A;REV__ENSG00000169894|ENST00000379458|MUC3A;REV__nc|ENSG00000169894|Q02505-2|MUC3A;REV__nc|ENSG00000169894|Q02505-2|MUC3A;REV__nc|ENSG00000169894|Q02505-3|MUC3A;REV__nc|ENSG00000169894|Q02505-3|MUC3A;REV__nc|ENSG00000169894|Q02505-4|MUC3A;REV__nc|ENSG00000169894|Q02505-4|MUC3A;REV__nc|ENSG00000169894|Q02505-5|MUC3A;REV__nc|ENSG00000169894|Q02505-5|MUC3A 2.9952420565917617 0.40578455234410343 1 P 1 -1 5.4846 0 0 0.46654 0 0 430.1705085092121 645.3366793268186 1075.5071878360307 0 0 0 0 0 0 0 0 0 P 0.46654 + + 5 + NaN NaN 82598.5 NaN 1557 1551 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3111 25.914 NaN 58000 35 0 11457 0.261 + 1973 DANGNSFATR 10 29 526.7413091274927 1051.4680653217854 2 526.7410888671875 MULTI HCD FTMS 0 0 0 3109 21928.357421875 0.8773290913498137 -1 0.013273239135742188 2 Unmodified _DANGNSFATR_ ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENST00000470671.1_1_X:71475533-71493153:-|nuORF 10.898955630103616 0.4091668631510381 1 WN[NG]S{M(Oxidation (M))|F}A 7 4 26.999 0 0 2.5678 0 0 0 272.13645349674067 272.13645349674067 26.999416639666194 0 0 0 0 0.3054621874040891 0 0 0 WN[NG]S{M(Oxidation (M))|F}A 2.5678 - 55 + NaN NaN 101716.3 NaN 1558 1551 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3112 25.917 NaN 33366 35 0 5346.1 0.261 + 28098 TIADSATSPK 10 23 495.7587139771291 989.5028750210582 2 495.75823974609375 MULTI HCD FTMS 0 0 0 3109 9511.1689453125 0.29401479275739933 -7 0.07814788818359375 3 Unmodified _TIADSATSPK_ ENSG00000120278|ENST00000696526|PLEKHG1;PLEKHG1|p.L159Ffs*29|1|0.13|ENSG00000120278|chr6:150768699-150768699|C/-|frameshift_variant 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F} 1 10 15.485 0 0 1.5649 0 0 824.4572187484005 0 824.4572187484005 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5649 - 6 + NaN NaN 77768.4 NaN 1559 1551 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3113 25.921 NaN 42248 35 0 9014.5 0.261 -1 0 18 469.32864488262436 468.32136841602437 1 469.3284606933594 MULTI HCD FTMS 0 0 0 3109 11676.404296875 0.4597427423660092 -13 0.16358566284179688 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94113.2 NaN 1560 1551 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3115 25.926 NaN 35200 35 0 4884.2 0.327 + 20597 PELSQVHR 8 26 483.26188427572185 964.5092156182437 2 483.2616271972656 MULTI HCD FTMS 0 0 0 3114 9387.1572265625 0.014281822562604353 74 -0.9899749755859375 1 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 4.75600775471527 0.5349361699807423 1 VHR 3 -1 18.416 0 0 1.9094 0 0 554.2703678172657 0 554.2703678172657 0 9.832881222565252 0 0 0 0 0 0 0 VHR 1.9094 + + 24 + NaN NaN 78392.7 NaN 1561 1552 3114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3116 25.931 NaN 35075 35 0 4664.1 0.261 + 22463 QQVDETLRQ 9 18 558.7855083751997 1115.5564638171993 2 558.7852783203125 MULTI HCD FTMS 0 0 0 3114 20733.984375 0.8586281296921725 2 -0.033550262451171875 2 Unmodified _QQVDETLRQ_ ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1-2|OSCP1;nc|ENSG00000116885|Q8WVF1-4|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1 5.731851221503515 0.3075653528928475 1 ET{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 5 4 14.437 0 0 1.2942 0 0 470.21260502989304 0 470.21260502989304 0 9.832881222565248 0 0 0 0 0 0 0 + ET{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 1.2942 + + 15 + NaN NaN 79617 NaN 1562 1552 3114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3117 25.934 NaN 33507 35 0 5656.5 0.261 + 25920 SPAEGSERL 9 26 473.23540696868605 944.4562610041721 2 473.2348937988281 MULTI HCD FTMS 0 0 0 3114 13356.2880859375 0.12952018159744386 16 -0.2079315185546875 3 Unmodified _SPAEGSERL_ ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S 5.296884461304476 0.3108627248283497 1 [PS]AE 4 5 21.198 0 0 2.2445 0 0 0 557.2690523736936 557.2690523736936 21.197887582883936 0 0 0 0 0.5 0 0 0 + [PS]AE 2.2445 + + 3 + NaN NaN 89505 NaN 1563 1552 3114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3118 25.937 NaN 54425 35 0 7088.3 0.261 -1 EGEDEHPQC 9 29 550.7015913405394 1099.3886297478787 2 550.7010498046875 MULTI HCD FTMS 0 0 0 3114 20644.919921875 1 0 0 4 Carbamidomethyl (C) _EGEDEHPQC(Carbamidomethyl (C))_ ENSG00000104972|ENST00000324602|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000131042|ENST00000314446|LILRB2;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104974|O75019-2|LILRA1;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2 3.944395688203298 0.32111559684428237 1 H 1 -1 3.4949 0 0 0.31789 0 0 478.15078902697866 481.1485689752563 959.299358002235 0 0 0 0 0 0 0 0 0 H 0.31789 + + 5 + NaN NaN 81666.6 NaN 1564 1552 3114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3119 25.941 NaN 49740 35 0 6120.7 0.261 + 28067 TGSAESTLPK 10 21 495.7587139771291 989.5028750210582 2 495.7593078613281 MULTI HCD FTMS 0 0 0 3114 11752.712890625 0.36330670443797813 -6 0.07149505615234375 5 Unmodified _TGSAESTLPK_ ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 106763.1 NaN 1565 1552 3114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3120 25.944 NaN 17152 35 0 4467.2 0.261 -1 RCLCFMRF 8 16 574.7612684939206 NaN 0 574.7623291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))LCFM(Oxidation (M))RF_ ENST00000373212.5_1_X:80553934-80554015:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85272.3 NaN 1566 1552 3114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3122 25.95 NaN 75212 35 0 14564 0.327 -1 TAVKNDYEM 9 25 543.7423522136379 1085.4701514940757 2 543.7424926757812 MULTI HCD FTMS 0 0 0 3121 16463.623046875 0.0701804502298959 92 -1.2151222229003906 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 10.150570793230772 0.27265765907388223 1 E{M(Oxidation (M))|F} 2 -1 18.583 0 0 1.712 0 0 791.3799915998062 0 791.3799915998062 0 2.653631197717985 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.712 + + 8 NaN NaN 82734.1 NaN 1567 1553 3121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3123 25.954 NaN 16896 35 0 3339.9 0.261 + -1 QEPQRWMR 8 14 573.7768142733161 1145.539075613432 2 573.7767333984375 MULTI HCD FTMS 0 0 0 3121 4587.1513671875 0.43053561377389715 -12 0.1533355712890625 2 Oxidation (M) _QEPQRWM(Oxidation (M))R_ REV__ENST00000440126.7_1_21:27372367-27372418:-|nuORF 0.6903765706972694 0.5409681170271811 1 G 1 -1 6.9897 0 0 0.61017 0 0 721.4516560351102 364.04258142642817 1085.4942374615384 0 0 0 0 0 0 0 0 0 G 0.61017 - 1 + NaN NaN 85962.4 NaN 1568 1553 3121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3125 25.96 NaN 32214 35 0 5907.2 0.411 + 25089 SADRSEESF 9 24 514.2201006057803 1026.4256482783605 2 514.2201538085938 MULTI HCD FTMS 0 0 0 3124 16230.181640625 0.9069112772974482 -7 0.09177970886230469 1 Unmodified _SADRSEESF_ ENSG00000167693|ENST00000336868|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-2|NXN;nc|ENSG00000167693|Q6DKJ4-3|NXN 11.494710602746466 0.2610445893512368 1 ES{M(Oxidation (M))|F} 3 6 35.445 0 0 3.4533 0 0 645.270799705275 0 645.270799705275 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 + ES{M(Oxidation (M))|F} 3.4533 + + 7 NaN NaN 91988 NaN 1569 1554 3124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3127 25.968 NaN 56562 35 0 11803 0.327 -1 EGEDEHPQC 9 23 550.7015913405394 1099.3886297478787 2 550.7005615234375 MULTI HCD FTMS 0 0 0 3126 12803.87890625 0.6201951353990592 3 -0.03652763366699219 1 Carbamidomethyl (C) _EGEDEHPQC(Carbamidomethyl (C))_ ENSG00000104972|ENST00000324602|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000131042|ENST00000314446|LILRB2;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104974|O75019-2|LILRA1;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 86636.8 NaN 1570 1555 3126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3128 25.972 NaN 27077 35 0 10875 0.261 -1 VYCHLCCP 8 17 497.7019740481233 NaN 0 497.7019958496094 PEAK HCD FTMS 0 0 0 3126 1696.56396484375 0.27441553000252333 1 -0.00995635986328125 2 Carbamidomethyl (C) _VYCHLC(Carbamidomethyl (C))CP_ METTL17|p.H400Y|1|0.08|ENSG00000165792|chr14:20996644-20996644|C/T|missense_variant 0.7936320650641473 0.38822285293237185 1 N 1 -1 1.2591 0 0 0.12674 0 0 703.5265849597248 172.8034609430297 876.3300459027545 0 0 0 0 0 0 0 0 0 N 0.12674 - 1 + NaN NaN 87392.9 NaN 1571 1555 3126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3130 25.978 NaN 100850 35 0 15900 0.327 -1 MPVHAAVQM 9 45 508.23852335816787 1014.4624937831358 2 508.23846435546875 MULTI HCD FTMS 0 0 0 3129 34504.734375 0.8823816400296964 5 -0.07028579711914062 1 2 Oxidation (M) _M(Oxidation (M))PVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 23.1484247019978 0.1603590852062899 1 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 4 -1 40.455 0 0 3.9878 0 0 475.2335682599625 0 475.2335682599625 0 33.46528504924979 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 3.9878 - 21 NaN NaN 91961.8 NaN 1572 1556 3129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3131 25.982 NaN 53319 35 0 10283 0.261 + 35493 YYFLFNIE 8 35 554.7713381066474 NaN 0 554.7575073242188 PEAK HCD FTMS 0 0 0 3129 2250.326171875 0.22402977764184115 9 -0.12140846252441406 2 Unmodified _YYFLFNIE_ REV__ENSG00000153339|ENST00000283351|TRAPPC8;REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88143.7 NaN 1573 1556 3129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3133 25.988 NaN 67657 35 0 14782 0.327 -1 EDAGSYRCE 9 20 543.7115733773727 1085.4085938215453 2 543.71142578125 MULTI HCD FTMS 0 0 0 3132 17535.689453125 0.7932972923301759 -8 0.09967422485351562 1 Carbamidomethyl (C) _EDAGSYRC(Carbamidomethyl (C))E_ ENSG00000182264|ENST00000332955|IZUMO1 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4266 0 0 920.3630596192 0 920.3630596192 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4266 - 5 + NaN NaN 87321.7 NaN 1574 1557 3132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3134 25.992 NaN 58019 35 0 6322.8 0.261 + 21890 QDEILAHR 8 33 491.25914955881217 980.5037461844244 2 491.25958251953125 MULTI HCD FTMS 0 0 0 3132 16435.86328125 0.007166726109179021 169 -2.3680553436279297 2 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 2.302733041254933 0.5385759549224092 1 V[RH] 3 6 5.9421 0 0 0.60603 0 0 570.2648963796305 0 570.2648963796305 0 1.3380312008851565 0 0 0 0 0 0 0 V[RH] 0.60603 - 8 + NaN NaN 93123 NaN 1575 1557 3132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3135 25.995 NaN 35941 35 0 5938.1 0.261 + 9035 HPEPTERVV 9 18 532.2802173857409 1062.5458818382817 2 532.2799682617188 MULTI HCD FTMS 0 0 0 3132 11421.98828125 0.5943603808665827 -5 0.06152915954589844 3 Unmodified _HPEPTERVV_ ENSG00000134317|ENST00000324907|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF;GRHL1|p.D245*|1|0.26|ENSG00000134317|chr2:9962512-9962513|-/T|frameshift_variant;nc|ENSG00000134317|Q9NZI5-3|GRHL1 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93294.3 NaN 1576 1557 3132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3136 25.999 NaN 13759 35 0 4416.2 0.261 -1 EADPEDGKPVM 11 12 602.2636184582785 1202.512683983357 2 602.263671875 MULTI HCD FTMS 0 0 0 3132 9765.5625 0.5908691693838944 6 -0.09058761596679688 4 Oxidation (M) _EADPEDGKPVM(Oxidation (M))_ ENSG00000153113|ENST00000675179|CAST;ENST00000513666.5_1_5:96073558-96090478:+|nuORF;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-7|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810|CAST 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81858.6 NaN 1577 1557 3132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3138 26.004 NaN 32283 35 0 6422.7 0.327 + 2121 DFNDITNML 9 16 541.745612457842 NaN 0 541.7318115234375 PEAK HCD FTMS 0 0 0 3137 2752.135986328125 0.5628327679916024 -1 0.016595840454101562 1 Unmodified _DFNDITNML_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 5.731851221503515 0.26747109115447115 1 D 1 8 3.9794 0 0 0.36796 0 0 590.3073737420526 373.11826502017817 963.4256387622308 0 0 0 0 0 0 0 0 0 + D 0.36796 + + 3 + NaN NaN 78551.5 NaN 1578 1558 3137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3139 26.009 NaN 28558 35 0 4900.6 0.261 -1 LKMPEMHFK 9 17 588.7987191761127 1175.5828854190254 2 588.7866821289062 MULTI HCD FTMS 0 0 0 3137 9098.7001953125 0.26222280774969187 10 -0.1298065185546875 2 Oxidation (M) _LKMPEM(Oxidation (M))HFK_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 1.4819007175156935 0.3397831423917744 1 E{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.67701 0 0 301.1869636434379 595.2948092096311 896.4817728530691 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 0.67701 + + 3 + NaN NaN 85106.7 NaN 1579 1558 3137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3140 26.012 NaN 26529 35 0 4752.3 0.262 + 22047 QGHQRVHT 8 21 481.7488288454033 961.4831047576066 2 481.74774169921875 MULTI HCD FTMS 0 0 0 3137 8775.5283203125 0.6632624011921707 4 -0.06050300598144531 3 Unmodified _QGHQRVHT_ ENSG00000062370|ENST00000354340|ZNF112;ENSG00000062370|ENST00000354340|ZNF112;ENSG00000062370|ENST00000354340|ZNF112;ENSG00000278318|ENST00000614049|ZNF229;nc|ENSG00000062370|Q9UJU3|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112;nc|ENSG00000278318|Q9UJW7-2|ZNF229 4.75600775471527 0.5349361699807423 1 A 1 8 6.1092 0 0 0.6354 0 0 705.3653507066285 182.05768762760002 887.4230383342285 0 0 0 0 0 0.5 0 0 0 A 0.6354 - 5 + NaN NaN 85202.4 NaN 1580 1558 3137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3141 26.016 NaN 34770 35 0 7825.6 0.261 + 1639 CARAFLWQ 8 17 497.7509678159397 993.4873826986794 2 498.2485656738281 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _CARAFLWQ_ REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78463.9 NaN 1581 1558 3137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3143 26.021 NaN 210320 35 0 18179 0.327 + 9537 HRDYETATL 9 51 553.2672343400287 1104.5199157468574 2 553.267333984375 MULTI HCD FTMS 0 0 0 3142 86405.015625 0.017505906760929692 94 -1.269369125366211 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 21.536976647645854 0.1742816388551942 1 YEAT{I|L} 5 4 44.954 0 0 4.07 0 0 509.23350722480626 0 509.23350722480626 0 10.445312593723983 0 0 0 0.7302046884880937 0 1.5 0 YEAT{I|L} 4.07 - 179 NaN NaN 119903.1 NaN 1582 1559 3142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3144 26.026 NaN 62218 35 0 9431.3 0.261 -1 EGEDEHPQC 9 30 550.7015913405394 1099.3886297478787 2 550.7010498046875 MULTI HCD FTMS 0 0 0 3142 10160.5546875 0.49215762163039695 7 -0.08823966979980469 2 Carbamidomethyl (C) _EGEDEHPQC(Carbamidomethyl (C))_ ENSG00000104972|ENST00000324602|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000131042|ENST00000314446|LILRB2;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104974|O75019-2|LILRA1;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 91344.6 NaN 1583 1559 3142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3145 26.029 NaN 35302 35 0 11450 0.261 -1 NIGIQTMECS 10 17 556.2412365474681 NaN 0 556.2303466796875 PEAK HCD FTMS 0 0 0 3142 5719.302734375 0.8769978843123072 -2 0.03339195251464844 3 Oxidation (M) _NIGIQTM(Oxidation (M))ECS_ ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888-3|TP53BP1;nc|ENSG00000067369|Q12888|TP53BP1;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88401.1 NaN 1584 1559 3142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3147 26.035 NaN 27550 35 0 3598.3 0.327 -1 VCESCMEM 8 26 531.1738332018008 1060.3331134704015 2 531.173583984375 MULTI HCD FTMS 0 0 0 3146 8724.814453125 0.5612872437750034 1 -0.01346588134765625 1 2 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))ESC(Carbamidomethyl (C))MEM(Oxidation (M))_ ENST00000546624.2_1_12:88177101-88177509:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90111.6 NaN 1585 1560 3146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3148 26.039 NaN 31314 35 0 4871.2 0.261 + -1 EGEETHQEC 9 22 559.7064677387062 1117.3983825442124 2 559.7056884765625 MULTI HCD FTMS 0 0 0 3146 11958.5341796875 1 0 0 2 Carbamidomethyl (C) _EGEETHQEC(Carbamidomethyl (C))_ REV__ENST00000543979.1_1_12:4777624-4835764:+|nuORF 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 101790.9 NaN 1586 1560 3146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3149 26.043 NaN 30782 35 0 7220.5 0.261 + 34885 YSFGENDIF 9 15 546.2375552632008 1090.4605575932014 2 546.7392578125 MULTI HCD FTMS 0 0 0 3146 4057.798095703125 0.5183687407270088 -4 0.056819915771484375 3 Unmodified _YSFGENDIF_ ENSG00000106384|ENST00000223114|MOGAT3;nc|ENSG00000106384|Q86VF5-3|MOGAT3 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83425.3 NaN 1587 1560 3146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3151 26.048 NaN 74858 35 0 7260.8 0.327 -1 QAVQDNPAM 9 37 495.2209598442488 988.4273667552976 2 495.2210388183594 MULTI HCD FTMS 0 0 0 3150 29280.984375 0.9030911514697352 -8 0.09842872619628906 1 Oxidation (M) _QAVQDNPAM(Oxidation (M))_ ENSG00000137752|ENST00000533400|CASP1;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENST00000528424.1_1_11:104901858-104905058:-|nuORF;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000204397|Q5EG05|CARD16 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2247 0 0 823.3814510832258 0 823.3814510832258 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2247 + + 4 + NaN NaN 91002.2 NaN 1588 1561 3150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3152 26.052 NaN 38694 35 0 8282.6 0.261 + 23800 RRPSQGGRYEC 11 22 436.879056697399 NaN 0 436.8787536621094 PEAK HCD FTMS 0 0 0 3150 24698.349609375 0.8275769792783034 3 -0.037899017333984375 2 Unmodified _RRPSQGGRYEC_ REV__ENST00000409331.6_1_2:85590275-85596871:+|nuORF;REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97643.6 NaN 1589 1561 3150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3153 26.056 NaN 42041 35 0 11285 0.261 + 26386 SSSGLRYPQ 9 19 497.7509678159397 993.4873826986794 2 497.75146484375 MULTI HCD FTMS 0 0 0 3150 6070.283203125 0.22739754110954732 -6 0.08024215698242188 3 Unmodified _SSSGLRYPQ_ ENST00000312175.6_1_11:65769958-65770033:+|nuORF 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89363.6 NaN 1590 1561 3150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3154 26.059 NaN 35514 35 0 7021.1 0.261 -1 FCRCACFC 8 15 562.1993010246333 NaN 0 562.19921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 3 Carbamidomethyl (C) _FC(Carbamidomethyl (C))RC(Carbamidomethyl (C))AC(Carbamidomethyl (C))FC_ ENSG00000111325|ENST00000228922|OGFOD2;ENST00000420319.6_1_12:123459798-123461705:+|nuORF;ENST00000545396.5_1_12:123459798-123462874:+|nuORF;nc|ENSG00000111325|Q6N063-3|OGFOD2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88711.8 NaN 1591 1561 3150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3156 26.065 NaN 30863 35 0 9675.4 0.327 -1 MKETIMNQ 8 15 526.7413091274927 1051.4680653217854 2 526.7410278320312 MULTI HCD FTMS 0 0 0 3155 8012.6845703125 0.3205785612711822 10 -0.12283706665039062 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MKETIM(Oxidation (M))NQ_ ENSG00000145741|ENST00000380591|BTF3;ENST00000510787.5_1_5:72794492-72798477:+|nuORF;nc|ENSG00000145741|P20290-2|BTF3 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84520.7 NaN 1592 1562 3155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3157 26.069 NaN 25987 35 0 4575.3 0.261 + 20598 PELSQVHR 8 22 483.26188427572185 964.5092156182437 2 483.2626037597656 MULTI HCD FTMS 0 0 0 3155 11516.5322265625 0.017521499408880214 84 -1.1076087951660156 2 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 2.302733041254933 0.5385759549224092 1 V[RH] 3 -1 10.458 0 0 1.0842 0 0 554.27045937 0 554.27045937 0 10.45757490560675 0 0 0 0 0 0 0 V[RH] 1.0842 + + 5 + NaN NaN 81434.4 NaN 1593 1562 3155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3158 26.073 NaN 35375 35 0 9745.9 0.261 + 12452 KQLVDLLQ 8 20 478.792413808292 955.570274683384 2 479.2940673828125 MULTI HCD FTMS 0 0 0 3155 4563.17578125 0.34436222425346846 -9 0.11521720886230469 3 Unmodified _KQLVDLLQ_ ENSG00000121964|ENST00000682281|GTDC1;ENST00000491448.5_1_2:144764747-144969145:-|nuORF;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-3|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83353.2 NaN 1594 1562 3155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3160 26.078 NaN 54936 35 0 9153.8 0.327 + -1 SCYMVQCH 8 23 550.7015913405394 1099.3886297478787 2 550.7015991210938 MULTI HCD FTMS 0 0 0 3159 12242.3359375 0.5929950798466519 11 -0.14290428161621094 1 2 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))YM(Oxidation (M))VQC(Carbamidomethyl (C))H_ REV__ENSG00000135632|ENST00000389501|SMYD5 4.75600775471527 0.5349361699807423 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 83949.3 NaN 1595 1563 3159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3162 26.086 NaN 41870 35 0 14368 0.327 -1 0 11 566.2808763659344 565.2735998993344 1 566.280517578125 MULTI HCD FTMS 0 0 0 3161 12690.521484375 0.2684096277620173 13 -0.1661815643310547 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90225.9 NaN 1596 1564 3161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3163 26.09 NaN 31535 35 0 5065.2 0.261 + -1 WFCPPSSF 8 18 514.2201006057803 1026.4256482783605 2 514.2199096679688 MULTI HCD FTMS 0 0 0 3161 17008.205078125 0.9503857278670171 3 -0.03996849060058594 2 Carbamidomethyl (C) _WFC(Carbamidomethyl (C))PPSSF_ REV__ENST00000360862.9_2_16:3534964-3535998:+|nuORF;REV__ENST00000407558.8_1_16:3534861-3535998:+|nuORF 4.75600775471527 0.5349361699807423 1 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5301 0 0 774.3142603948238 0 774.3142603948238 0 25.969100130080562 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.5301 + + 2 NaN NaN 107067.1 NaN 1597 1564 3161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3164 26.094 NaN 81979 35 0 10025 0.261 -1 MGTDPEPAM 9 29 490.68867921558626 979.3628054979725 2 490.6883544921875 MULTI HCD FTMS 0 0 0 3161 15031.671875 0.8197902201217699 -3 0.037899017333984375 3 2 Oxidation (M) _M(Oxidation (M))GTDPEPAM(Oxidation (M))_ ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL-WDR70|1|fusion;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.0916 0 0 814.3174849186742 0 814.3174849186742 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0916 + + 3 + NaN NaN 87972 NaN 1598 1564 3161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3166 26.099 NaN 84265 35 0 14886 0.327 -1 MPVHAAVQM 9 34 508.23852335816787 1014.4624937831358 2 508.23834228515625 MULTI HCD FTMS 0 0 0 3165 24513.908203125 0.6268885390835838 14 -0.1692333221435547 1 2 Oxidation (M) _M(Oxidation (M))PVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 12.531546534597751 0.2520865569484384 1 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 4 -1 32.295 0 0 3.1834 0 0 475.23082167793126 0 475.23082167793126 0 26.81031895404267 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 3.1834 - 16 NaN NaN 93562.2 NaN 1599 1565 3165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3167 26.104 NaN 32099 35 0 9946.4 0.261 -1 YMIRLCLA 8 21 528.2723347471313 1054.5301165610624 2 528.2716674804688 MULTI HCD FTMS 0 0 0 3165 4318.88232421875 0.1713870220006853 16 -0.1847057342529297 2 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))IRLC(Carbamidomethyl (C))LA_ ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-3|TMEM63B 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87077.6 NaN 1600 1565 3165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3169 26.109 NaN 163050 35 0 26402 0.327 + -1 TPHTDRQI 8 40 505.25674700648767 1008.4989410797754 2 505.2565002441406 MULTI HCD FTMS 0 0 0 3168 31598.171875 0.45186420409069805 6 -0.07830429077148438 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TPHTDRQI_ REV__ENST00000227758.6_3_11:102220404-102220434:+|nuORF 7.910154910731844 0.5302565402355366 1 QE 2 -1 10.969 0 0 1.0877 0 0 148.11916608559483 600.2531832330686 748.3723493186635 0 0 0 0 0 0 0 0 0 QE 1.0877 - 18 + NaN NaN 119020.8 NaN 1601 1566 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3170 26.114 NaN 74663 35 0 14469 0.261 -1 EDAGSYRCE 9 32 543.7115733773727 1085.4085938215453 2 543.7112426757812 MULTI HCD FTMS 0 0 0 3168 16425.84375 0.7430889675564704 1 -0.016546249389648438 2 Carbamidomethyl (C) _EDAGSYRC(Carbamidomethyl (C))E_ ENSG00000182264|ENST00000332955|IZUMO1 3.944395688203298 0.32111559684428237 1 E 1 -1 4.6041 0 0 0.42418 0 0 164.9889904053328 788.3584078424436 953.3473982477765 0 0 0 0 0 0 0 0 0 E 0.42418 + + 6 + NaN NaN 97231.4 NaN 1602 1566 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3171 26.117 NaN 27167 35 0 5630 0.261 + 21108 PNRIEHSL 8 20 483.26188427572185 964.5092156182437 2 483.2609558105469 MULTI HCD FTMS 0 0 0 3168 9461.0966796875 0.014394315634193605 88 -1.1976604461669922 3 Unmodified _PNRIEHSL_ REV__ENSG00000142661|ENST00000374434|MYOM3;REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97655.3 NaN 1603 1566 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3172 26.12 NaN 35967 35 0 10875 0.261 + -1 EGEETHQEC 9 23 559.7064677387062 1117.3983825442124 2 559.7070922851562 MULTI HCD FTMS 0 0 0 3168 4183.25390625 0.34981326669246654 6 -0.07830429077148438 4 Carbamidomethyl (C) _EGEETHQEC(Carbamidomethyl (C))_ REV__ENST00000543979.1_1_12:4777624-4835764:+|nuORF 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92761.3 NaN 1604 1566 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3174 26.126 NaN 64590 35 0 14079 0.411 -1 TAVKNDYEM 9 31 543.7423522136379 1085.4701514940757 2 543.7423706054688 MULTI HCD FTMS 0 0 0 3173 12018.408203125 0.051231572560942795 106 -1.4141864776611328 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 28.494509381512117 0.11816142465008336 1 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 -1 + 36.168 0 0 3.332 3.332 88.409 0 0 0 19.727431120499126 10.72228114217922 10.72228114217922 36.1675937359032 0 1.2059771852360797 0 0.3807196863200844 0 [TA]VK[DN]YE{M(Oxidation (M))|F} 3.332 + + 38 + NaN NaN 112521.9 NaN 1605 1567 3173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3176 26.134 NaN 17126 35 0 4126.1 0.327 + -1 PWMFKAPHF 9 11 588.7871409231392 1175.5597289130783 2 588.7875366210938 MULTI HCD FTMS 0 0 0 3175 3543.84814453125 0.24208179373585342 2 -0.026754379272460938 1 Oxidation (M) _PWM(Oxidation (M))FKAPHF_ REV__ENST00000326195.12_1_6:30558692-30558890:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84463.5 NaN 1606 1568 3175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3177 26.138 NaN 33728 35 0 5499.7 0.262 + 14437 LEQVAQRT 8 26 472.7617045295995 943.508856125999 2 472.7608947753906 MULTI HCD FTMS 0 0 0 3175 11146.169921875 0.6596277038043572 -4 0.04819297790527344 2 Unmodified _LEQVAQRT_ REV__ENSG00000108784|ENST00000225927|NAGLU 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90266.9 NaN 1607 1568 3175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3178 26.142 NaN 38851 35 0 9238.6 0.261 + -1 EKFIMMVL 8 14 526.7778211829615 NaN 0 526.7780151367188 PEAK HCD FTMS 0 0 0 3175 4242.21435546875 0.3535217468616395 26 -0.28943443298339844 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EKFIMMVL_ REV__ENST00000544440.6_1_13:77625173-77629724:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93443.8 NaN 1608 1568 3175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3180 26.147 NaN 200710 35 0 15357 0.327 + 3469 EGDRQWTLT 9 52 553.2672343400287 1104.5199157468574 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3179 74482.015625 0.015090272381365111 104 -1.3926677703857422 1 Unmodified _EGDRQWTLT_ REV__ENSG00000204525|ENST00000376228|HLA-C;REV__ENSG00000204642|ENST00000259951|HLA-F;REV__ENSG00000206503|ENST00000376809|HLA-A;REV__ENSG00000234745|ENST00000412585|HLA-B;REV__ENST00000383620.4_1_6:29857122-29858256:+|nuORF;REV__ENST00000470363.5_1_6:31237527-31238194:-|nuORF;REV__ENST00000484704.5_1_6:29691969-29693843:+|nuORF;REV__ENST00000487245.5_1_6:31236948-31239147:-|nuORF;REV__ENST00000494367.1_1_6:29976031-29977313:+|nuORF;REV__ENST00000495183.5_1_6:29910749-29913287:+|nuORF;REV__ENST00000496081.5_1_6:29910330-29912419:+|nuORF;REV__ENST00000606273.3_1_6:29692860-29693788:+|nuORF;REV__HLA-B|p.Q248K|1|0.2|ENSG00000234745|chr6:31355470-31355470|G/T|missense_variant;REV__HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;REV__HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;REV__HLA-F|p.Q245H|1|0.24|ENSG00000204642|chr6:29725155-29725155|G/C|missense_variant;REV__nc|ENSG00000204525|P10321-2|HLA-C;REV__nc|ENSG00000204642|P30511|HLA-F;REV__nc|ENSG00000206341|P01893|HLA-H;REV__nc|ENSG00000206503|P04439-2|HLA-A 10.073929032068715 0.27331982688540024 1 HP 2 -1 18.812 0 0 1.7032 0 0 0 867.3901046035371 867.3901046035371 2.973155905036718 0 0 0 0 0.5 0 0 0 HP 1.7032 - 150 + NaN NaN 110065.2 NaN 1609 1569 3179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3181 26.152 NaN 50634 35 0 6048.3 0.262 -1 0 27 469.32864488262436 468.32136841602437 1 469.328369140625 MULTI HCD FTMS 0 0 0 3179 16643.720703125 0.6553241567077717 5 -0.07379531860351562 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 86593 NaN 1610 1569 3179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3182 26.155 NaN 44375 35 0 6560.5 0.261 + 19095 NFDLSEMVQ 9 24 541.7453739692054 NaN 0 541.7323608398438 PEAK HCD FTMS 0 0 0 3179 2547.334228515625 0.6369980942343018 1 -0.013460159301757812 3 Unmodified _NFDLSEMVQ_ sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1 3.5964929083625545 0.27781873954207675 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85180.5 NaN 1611 1569 3179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3184 26.161 NaN 22783 35 0 4020.2 0.327 + 34947 YSLWNYQGL 9 19 572.2770071717713 1142.5394614103425 2 572.2767333984375 MULTI HCD FTMS 0 0 0 3183 8762.7001953125 0.5819033162958259 1 -0.0101470947265625 1 Unmodified _YSLWNYQGL_ REV__ACSL3|p.N510Kfs*9|1|0.33|ENSG00000123983|chr2:222928919-222928920|-/A|frameshift_variant;REV__ENSG00000123983|ENST00000357430|ACSL3 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88471.2 NaN 1612 1570 3183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3185 26.165 NaN 38371 35 0 10073 0.261 -1 MLRWLCGK 8 23 532.2802173857409 1062.5458818382817 2 532.2803955078125 MULTI HCD FTMS 0 0 0 3183 10734.220703125 0.5585713580085303 8 -0.09946060180664062 2 Carbamidomethyl (C) _MLRWLC(Carbamidomethyl (C))GK_ ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-5|VRK2 0.6903765706972694 0.5409681170271811 1 S 1 -1 5.4846 0 0 0.51617 0 0 512.7615933634755 459.7205904596313 972.4821838231069 0 0 0 0 0 0 0 0 0 S 0.51617 - 1 + NaN NaN 80529.1 NaN 1613 1570 3183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3187 26.171 NaN 45182 35 0 5967.1 0.327 -1 QAVQDNPAM 9 25 495.2209598442488 988.4273667552976 2 495.22119140625 MULTI HCD FTMS 0 0 0 3186 21020.18359375 0.6483095500707504 2 -0.03009796142578125 1 Oxidation (M) _QAVQDNPAM(Oxidation (M))_ ENSG00000137752|ENST00000533400|CASP1;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENST00000528424.1_1_11:104901858-104905058:-|nuORF;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000204397|Q5EG05|CARD16 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.0724 0 0 823.3817104826398 0 823.3817104826398 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0724 + + 4 + NaN NaN 89522.2 NaN 1614 1571 3186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3188 26.175 NaN 33536 35 0 6167.9 0.261 + 15100 LMEVTVMFK 9 21 549.2906531996524 1096.5667534661047 2 549.29052734375 MULTI HCD FTMS 0 0 0 3186 17013.513671875 0.9194111871776464 -3 0.03690147399902344 2 Unmodified _LMEVTVMFK_ ENST00000268182.9_1_15:91043867-91044059:+|nuORF 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88466.4 NaN 1615 1571 3186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3189 26.179 NaN 22302 35 0 5318.5 0.261 + -1 VYMHFLYC 8 11 546.2375552632008 1090.4605575932014 2 546.2377319335938 MULTI HCD FTMS 0 0 0 3186 4842.4482421875 0.4176143699309589 11 -0.12083625793457031 3 Oxidation (M) _VYM(Oxidation (M))HFLYC_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__nc|ENSG00000198838|Q15413-2|RYR3 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105242.6 NaN 1616 1571 3186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3190 26.182 NaN 80516 35 0 14714 0.263 + 10349 ILSFVKMHGDG 11 34 401.8778357069083 NaN 0 401.87774658203125 PEAK HCD FTMS 0 0 0 3186 9904.142578125 0.1400280215043977 787 -17.7296142578125 4 Unmodified _ILSFVKMHGDG_ REV__ENSG00000148498|ENST00000374788|PARD3;REV__nc|ENSG00000148498|Q8TEW0-10|PARD3;REV__nc|ENSG00000148498|Q8TEW0-11|PARD3;REV__nc|ENSG00000148498|Q8TEW0-3|PARD3;REV__nc|ENSG00000148498|Q8TEW0-4|PARD3;REV__nc|ENSG00000148498|Q8TEW0-5|PARD3;REV__nc|ENSG00000148498|Q8TEW0-6|PARD3;REV__nc|ENSG00000148498|Q8TEW0-7|PARD3;REV__nc|ENSG00000148498|Q8TEW0-8|PARD3;REV__nc|ENSG00000148498|Q8TEW0-9|PARD3;REV__nc|ENSG00000148498|Q8TEW0|PARD3;REV__PARD3|p.I353Mfs*39|1|0.34|ENSG00000148498|chr10:34382871-34382880|ATGGAACCAA/-|frameshift_variant 1.3295316138638542 0.3383486451652214 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87908 NaN 1617 1571 3186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3192 26.188 NaN 272020 35 0 13620 0.327 + 9538 HRDYETATL 9 61 553.2672343400287 1104.5199157468574 2 553.75537109375 MULTI HCD FTMS 0 0 0 3191 36658.45703125 0.012607873315891593 107 -1.4131107330322266 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 18.1463463914782 0.20357593197100715 1 [PS]EEKQCA 8 8 33.581 0 0 3.0404 0 0 0 229.1186848844625 229.1186848844625 14.540331674680044 0 0 0 0 0.3494850021680094 0 1.1237125054200234 0 [PS]EEKQCA 3.0404 - 421 NaN NaN 116061.3 NaN 1618 1572 3191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3193 26.192 NaN 71304 35 0 17061 0.261 -1 MLSTLPVSM 9 30 497.7509678159397 993.4873826986794 2 497.75115966796875 MULTI HCD FTMS 0 0 0 3191 15643.3740234375 0.5860129863060364 5 -0.06445503234863281 2 Oxidation (M) _MLSTLPVSM(Oxidation (M))_ ENST00000302503.7_1_11:47660306-47660536:-|nuORF 4.3292370932331545 0.3181982124262546 1 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVS{M(Oxidation (M))|F} 7 -1 20.89 0 0 2.1027 0 0 166.15628025902942 0 166.15628025902942 0 15.405170530680579 0 0 0 0 0 0 0 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVS{M(Oxidation (M))|F} 2.1027 - 23 + NaN NaN 99177 NaN 1619 1572 3191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3194 26.196 NaN 40250 35 0 10972 0.261 + -1 STPLCLYM 8 30 500.72941252465307 NaN 0 500.72930908203125 PEAK HCD FTMS 0 0 0 3191 6119.7509765625 0.9307925399650564 -11 0.13962554931640625 3 Carbamidomethyl (C),Oxidation (M) _STPLC(Carbamidomethyl (C))LYM(Oxidation (M))_ REV__ENST00000435096.1_1_7:139044701-139059229:+|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100427.4 NaN 1620 1572 3191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3196 26.201 NaN 30223 35 0 3059 0.327 + 11773 KEDKPLKV 8 22 478.792413808292 955.570274683384 2 478.7920227050781 MULTI HCD FTMS 0 0 0 3195 24616.345703125 0.992390676405404 3 -0.03777503967285156 1 Unmodified _KEDKPLKV_ REV__tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99940.9 NaN 1621 1573 3195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3197 26.206 NaN 70320 35 0 13931 0.261 -1 GPDGGEEVSM 10 32 497.19511440357627 992.3756758739526 2 497.1951904296875 MULTI HCD FTMS 0 0 0 3195 15420.390625 0.3730090802626887 -11 0.13630294799804688 2 Oxidation (M) _GPDGGEEVSM(Oxidation (M))_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866|KLC1 27.628801355627647 0.2527626205058048 1 EVS{M(Oxidation (M))|F} 4 -1 46.274 0 0 4.663 0 0 512.1868763654312 0 512.1868763654312 0 39.28456906244314 0 0 0 1.8494850021680094 0 0.4247425010840047 0 EVS{M(Oxidation (M))|F} 4.663 + + 53 NaN NaN 89864.6 NaN 1622 1573 3195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3198 26.209 NaN 64176 35 0 17295 0.261 + 675 APSIGSRHH 9 23 481.2511130709093 960.4876732086186 2 481.25115966796875 MULTI HCD FTMS 0 0 0 3195 15555.6171875 0.5890251151984098 -7 0.09177017211914062 3 Unmodified _APSIGSRHH_ ENST00000369282.5_1_10:115939048-115947598:+|nuORF 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97044.6 NaN 1623 1573 3195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3199 26.212 NaN 104380 35 0 14791 0.261 + -1 FLLFDLCP 8 25 505.25674700648767 1008.4989410797754 2 505.7725830078125 MULTI HCD FTMS 0 0 0 3195 4102.380859375 0.12747781084391563 15 -0.1590442657470703 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FLLFDLCP_ REV__ENST00000495890.1_1_9:7049197-7103927:+|nuORF 0.7936320650641473 0.540814922690045 1 H 1 -1 4.6041 0 0 0.45653 0 0 710.4459169822973 157.9783877008422 868.4243046831394 0 0 0 0 0 0 0 0 0 H 0.45653 - 1 + NaN NaN 98564.5 NaN 1624 1573 3195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3200 26.216 NaN 42013 35 0 11740 0.261 -1 PYPLITPCY 9 15 562.2781554045614 1122.5417578759227 2 562.2780151367188 MULTI HCD FTMS 0 0 0 3195 12919.7705078125 0.37505718058928494 -9 0.11519241333007812 5 Carbamidomethyl (C) _PYPLITPC(Carbamidomethyl (C))Y_ ENSG00000155816|ENST00000319653|FMN2 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100047.3 NaN 1625 1573 3195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3202 26.221 NaN 34853 35 0 9456.1 0.327 -1 0 12 566.2808763659344 565.2735998993344 1 566.281005859375 MULTI HCD FTMS 0 0 0 3201 7624.2783203125 0.16125654949867352 23 -0.2405986785888672 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105164.3 NaN 1626 1574 3201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3203 26.226 NaN 14550 35 0 3842.9 0.261 -1 CRYMNNFD 8 10 568.2182375352154 NaN 0 568.2184448242188 PEAK HCD FTMS 0 0 0 3201 2113.2353515625 0.4930300464367382 1 -0.010114669799804688 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RYM(Oxidation (M))NNFD_ ENSG00000104613|ENST00000397977|INTS10 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97853.5 NaN 1627 1574 3201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3206 26.239 NaN 40308 35 0 5187.4 0.327 + 28333 TNLRDLPVQ 9 27 528.2957347513906 1054.576916569581 2 528.2954711914062 MULTI HCD FTMS 0 0 0 3205 17297.3359375 0.6364394261418289 -6 0.07802009582519531 1 Unmodified _TNLRDLPVQ_ tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106222.4 NaN 1628 1576 3205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3207 26.243 NaN 27917 35 0 5522.7 0.261 + 19586 NTEPIVHR 8 22 483.26188427572185 964.5092156182437 2 483.26190185546875 MULTI HCD FTMS 0 0 0 3205 8562.8115234375 0.01302764530977615 98 -1.3167667388916016 2 Unmodified _NTEPIVHR_ REV__ENSG00000142606|ENST00000378412|MMEL1;REV__nc|ENSG00000142606|Q495T6-2|MMEL1;REV__nc|ENSG00000142606|Q495T6-3|MMEL1 4.75600775471527 0.5349361699807423 1 {I|L}V[RH] 4 -1 9.6927 0 0 1.0049 0 0 441.1876346629687 0 441.1876346629687 0 9.692737604564032 0 0 0 0 0 0 0 {I|L}V[RH] 1.0049 + + 8 + NaN NaN 79470.9 NaN 1629 1576 3205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3208 26.247 NaN 34881 35 0 11988 0.261 -1 QAPRPIWC 8 23 514.2620693853252 NaN 0 514.2197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _QAPRPIWC(Carbamidomethyl (C))_ ENST00000467556.1_1_20:36028555-36030207:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78885.3 NaN 1630 1576 3205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3210 26.252 NaN 11134 35 0 1800 0.412 -1 IRCHYWLVL 9 22 630.3391723632812 NaN 0 630.3391723632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _IRC(Carbamidomethyl (C))HYWLVL_ ENST00000414948.1_1_1:8935893-8936052:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93036.3 NaN 1631 1577 3209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3212 26.26 NaN 56607 35 0 5801.8 0.411 + 21891 QDEILAHR 8 41 491.25914955881217 980.5037461844244 2 491.25933837890625 MULTI HCD FTMS 0 0 0 3211 9831.4365234375 0.004286918893006094 190 -2.886869430541992 1 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 4.75600775471527 0.5349361699807423 1 VHR 3 6 21.682 0 0 2.2114 0 0 570.2648068307119 0 570.2648068307119 0 4.69273760456403 0 0 0 0 0 0 0 VHR 2.2114 - 18 + NaN NaN 98260.6 NaN 1632 1578 3211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3214 26.268 NaN 88593 35 0 8137.3 0.411 + 9037 HPESERISM 9 46 543.2557842234844 1084.4970155137687 2 543.2557983398438 MULTI HCD FTMS 0 0 0 3213 22021.390625 0.17756914910706356 -15 0.18245697021484375 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 12.240655878213236 0.2545997876781172 1 HPE 3 6 31.198 0 0 2.8767 0 0 0 718.3196113231381 718.3196113231381 15.713337517843655 0 0 0 0 0.5 0 0 0 + HPE 2.8767 + + 44 + NaN NaN 121495.1 NaN 1633 1579 3213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3217 26.284 NaN 58800 35 0 9069.9 0.411 -1 EGEDEHPQC 9 49 550.7015913405394 1099.3886297478787 2 550.7018432617188 MULTI HCD FTMS 0 0 0 3216 7427.62109375 0.3597796030140965 29 -0.38556480407714844 1 Carbamidomethyl (C) _EGEDEHPQC(Carbamidomethyl (C))_ ENSG00000104972|ENST00000324602|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000131042|ENST00000314446|LILRB2;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104974|O75019-2|LILRA1;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2 3.944395688203298 0.32111559684428237 1 [C(Carbamidomethyl (C))H][{I|L}V][C(Carbamidomethyl (C))D][C(Carbamidomethyl (C))H] 8 -1 + 0 0 0 0 0 39.275 0 0 0 4.820078419978907 0 0 0 0 0.3807196863200844 0 0 0 [C(Carbamidomethyl (C))H][{I|L}V][C(Carbamidomethyl (C))D][C(Carbamidomethyl (C))H] 0 - 11 NaN NaN 93476.9 NaN 1634 1581 3216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3219 26.292 NaN 30880 35 0 8503.1 0.411 -1 0 22 566.2808763659344 565.2735998993344 1 566.266845703125 MULTI HCD FTMS 0 0 0 3218 1808.8673095703125 0.038258270302795265 31 -0.4244709014892578 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92901 NaN 1635 1582 3218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3221 26.3 NaN 22349 35 0 4568.1 0.327 + 24119 RYASTPQKF 9 15 549.2906531996524 1096.5667534661047 2 549.2908935546875 MULTI HCD FTMS 0 0 0 3220 10093.9560546875 0.5454779241104554 9 -0.10867881774902344 1 Unmodified _RYASTPQKF_ ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94603 NaN 1636 1583 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3222 26.304 NaN 17874 35 0 3752.3 0.261 + 35336 YWNFTKDIG 9 14 572.2770071717713 1142.5394614103425 2 572.2766723632812 MULTI HCD FTMS 0 0 0 3220 5912.16552734375 0.39260828856059005 14 -0.16188430786132812 2 Unmodified _YWNFTKDIG_ ENST00000542507.5_2_1:29095522-29095663:+|nuORF 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82055.7 NaN 1637 1583 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3223 26.308 NaN 26224 35 0 11020 0.261 + -1 DCSTKMTKY 9 15 546.7388916015625 NaN 0 546.7388916015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _DCSTKM(Oxidation (M))TKY_ REV__ENST00000424492.7_1_15:44853309-44853396:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81381.3 NaN 1638 1583 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3225 26.313 NaN 487390 35 0 38888 0.327 + 9539 HRDYETATL 9 78 553.2672343400287 1104.5199157468574 2 553.7554931640625 MULTI HCD FTMS 0 0 0 3224 29463.6953125 0.010133392619371854 119 -1.620626449584961 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 13.042465956692817 0.2476723265019929 1 [PS]EEKQE{M(Oxidation (M))|F} 8 8 44.391 0 0 4.019 0 0 0 127.09585378183785 127.09585378183785 20.52887198244136 0 0 0 0 0 0 1.1421590589602533 0.2614393726401688 [PS]EEKQE{M(Oxidation (M))|F} 4.019 - 534 NaN NaN 148913.8 NaN 1639 1584 3224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3226 26.318 NaN 43359 35 0 11229 0.261 + 4183 ETTNLIHR 8 28 492.2671466824815 982.519740431763 2 492.26715087890625 MULTI HCD FTMS 0 0 0 3224 13562.951171875 0.7078342948170395 4 -0.04693412780761719 2 Unmodified _ETTNLIHR_ REV__ENSG00000116213|ENST00000270708|WRAP73 7.289230182591677 0.5311777711368266 1 {I|L}{I|L}HR 4 -1 8.9402 0 0 0.90992 0 0 445.18088652726925 0 445.18088652726925 0 8.940162615404079 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}HR 0.90992 + + 6 + NaN NaN 79180.7 NaN 1640 1584 3224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3228 26.323 NaN 38473 35 0 10616 0.327 + 8547 HANDREVVL 9 19 526.7778054823253 1051.5410580314506 2 526.7777099609375 MULTI HCD FTMS 0 0 0 3227 22315.7109375 0.5334674155924694 -9 0.08446884155273438 1 Unmodified _HANDREVVL_ REV__ENSG00000120262|ENST00000239374|CCDC170 5.731851221503515 0.3075653528928475 1 HA 2 -1 22.959 0 0 2.1833 0 0 0 840.4222506158811 840.4222506158811 22.95880017344075 0 0 0 0 0.5 0 0 0 HA 2.1833 + + 2 + NaN NaN 89371.6 NaN 1641 1585 3227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3229 26.328 NaN 73685 35 0 13592 0.263 + 20489 PCPSAQFQVVK 11 33 401.8778357069083 NaN 0 401.8782043457031 PEAK HCD FTMS 0 0 0 3227 7317.8427734375 0.10346206520773844 801 -18.381444931030273 2 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86948.7 NaN 1642 1585 3227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3231 26.333 NaN 46172 35 0 6750.4 0.327 + 19611 NTVHDIVNR 9 26 534.2833714164815 1066.5521898997629 2 534.2835083007812 MULTI HCD FTMS 0 0 0 3230 28839.26953125 0.9132978216739055 1 -0.013326644897460938 1 Unmodified _NTVHDIVNR_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ENSG00000119203|ENST00000238112|CPSF3 5.296884461304476 0.3108627248283497 1 [WK]HD 4 7 16.95 0 0 1.5893 0 0 0 497.2817476861938 497.2817476861938 14.47621246364342 0 0 0 0 0.4247425010840047 0 0 0 [WK]HD 1.5893 - 4 + NaN NaN 105601.9 NaN 1643 1586 3230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3232 26.338 NaN 38411 35 0 11396 0.261 + 18082 MMRKGLPE 8 16 481.2511130709093 960.4876732086186 2 481.2506408691406 MULTI HCD FTMS 0 0 0 3230 11252.43359375 0.4260818400151345 6 -0.07523345947265625 2 Unmodified _MMRKGLPE_ ENSG00000169340|ENST00000302451|PDILT 5.230669730166228 0.5342319408533849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87507.2 NaN 1644 1586 3230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3233 26.341 NaN 29824 35 0 8867.5 0.261 + 31056 VSVLVGGGIGV 11 18 478.792413808292 955.570274683384 2 478.79229736328125 MULTI HCD FTMS 0 0 0 3230 7896.9296875 0.31835917030971694 16 -0.2156524658203125 3 Unmodified _VSVLVGGGIGV_ ENSG00000137857|ENST00000389037|DUOX1;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92968.5 NaN 1645 1586 3230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3235 26.347 NaN 70413 35 0 8810.7 0.327 -1 GPDGGEEVSM 10 30 497.19511440357627 992.3756758739526 2 497.1949768066406 MULTI HCD FTMS 0 0 0 3234 27527.1875 0.6658645128578629 3 -0.043704986572265625 1 Oxidation (M) _GPDGGEEVSM(Oxidation (M))_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866|KLC1 22.736283301280096 0.29844449404982915 1 EVS{M(Oxidation (M))|F} 4 -1 42.423 0 0 4.2749 0 0 512.1863880841812 0 512.1863880841812 0 25.43305028184122 0 0 0 0.9247425010840047 0 0.4247425010840047 0 EVS{M(Oxidation (M))|F} 4.2749 + + 56 NaN NaN 92908.5 NaN 1646 1587 3234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3236 26.351 NaN 42726 35 0 5662.5 0.261 -1 EAVGVMATR 9 29 475.2422946753506 948.4700364175012 2 475.24249267578125 MULTI HCD FTMS 0 0 0 3234 12888.447265625 0.4106720969180635 -8 0.07831192016601562 2 Oxidation (M) _EAVGVM(Oxidation (M))ATR_ ENST00000398559.6_1_3:69101351-69101438:-|nuORF 7.101721422024254 0.29718071671418667 1 {[CP]|[EA]}VR{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8 -1 + 25.864 0 0 2.7269 2.7269 84.51 0 0 0 20.379099962974152 4.6040937697618745 4.6040937697618745 9.262137858390812 0 0 0 0 0 {[CP]|[EA]}VR{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[CP]|[EA]}V[VG]{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[CP]|[EA]}V{[SA]|[TG]}{[ES]|[DT]|[{I|L}C]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.7269;1.7503;0.27646 -;+;- + 35 + NaN NaN 82531.4 NaN 1647 1587 3234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3237 26.355 NaN 51560 35 0 11079 0.261 -1 LCQKTMSLFT 10 26 410.5349787484439 1228.5831068455318 3 410.5352478027344 MULTI HCD FTMS 0 0 0 3234 10558.986328125 0.6432013197629167 2 -0.030256271362304688 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LCQKTM(Oxidation (M))SLFT_ ENST00000448173.5_1_7:72469630-72469741:-|nuORF 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88388.1 NaN 1648 1587 3234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3239 26.36 NaN 45090 35 0 12204 0.327 + -1 MLPWPVYTT 9 22 562.2781554045614 1122.5417578759227 2 562.277587890625 MULTI HCD FTMS 0 0 0 3238 13720.6630859375 0.39830685922133247 6 -0.06339073181152344 1 Oxidation (M) _M(Oxidation (M))LPWPVYTT_ REV__ENSG00000168806|ENST00000305641|LCMT2;REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104525.9 NaN 1649 1588 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3240 26.365 NaN 34759 35 0 4890.9 0.262 -1 0 27 469.32864488262436 468.32136841602437 1 469.3282165527344 MULTI HCD FTMS 0 0 0 3238 16408.91015625 0.6460788066828785 24 -0.3426494598388672 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102852.7 NaN 1650 1588 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3241 26.368 NaN 22339 35 0 4288.9 0.261 + 34772 YQNKGRIS 8 20 483.26188427572185 964.5092156182437 2 483.2610778808594 MULTI HCD FTMS 0 0 0 3238 5672.9697265625 0.008630977950228788 110 -1.4952754974365234 3 Unmodified _YQNKGRIS_ REV__nc|ENSG00000105982|Q9H0A6-2|RNF32 0.6903765706972694 0.5409681170271811 1 Q 1 -1 3.9794 0 0 0.41258 0 0 682.1701786082813 151.26270471744377 833.432883325725 0 0 0 0 0 0 0 0 0 Q 0.41258 + + 2 + NaN NaN 91005.5 NaN 1651 1588 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3242 26.371 NaN 41300 35 0 10803 0.261 -1 KMTLFKSLM 9 24 565.8001665007786 NaN 0 566.2810668945312 PEAK HCD FTMS 0 0 0 3238 5164.5078125 0.7914267499528597 1 -0.016788482666015625 4 2 Oxidation (M) _KM(Oxidation (M))TLFKSLM(Oxidation (M))_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion;SYNE2|p.D503Afs*13|1|0.06|ENSG00000054654|chr14:63978952-63978953|-/CTATGGCTAAAATTATAGTTAA|frameshift_variant 0.5247636613948944 0.2927039108006614 1 P 1 -1 3.0989 0 0 0.27434 0 0 563.7654198162071 465.74274622135005 1029.5081660375572 0 0 0 0 0 0 0 0 0 P 0.27434 - 1 + NaN NaN 88863.7 NaN 1652 1588 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3244 26.377 NaN 67324 35 0 8444.5 0.327 + 27649 TAKDSDPEL 9 20 488.2350225523721 974.4554921715442 2 488.2348327636719 MULTI HCD FTMS 0 0 0 3243 25968.12109375 0.7066775845753465 -3 0.043582916259765625 1 Unmodified _TAKDSDPEL_ ENSG00000140326|ENST00000356231|CDAN1;nc|ENSG00000140326|Q8IWY9-1|CDAN1 5.296884461304476 0.3108627248283497 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106197.6 NaN 1653 1589 3243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3245 26.381 NaN 40598 35 0 6138.9 0.261 -1 0 26 476.1982712911341 475.19099482453413 1 476.19854736328125 MULTI HCD FTMS 0 0 0 3243 17021.552734375 0.44731373653650086 -76 0.9458179473876953 2 NaN NaN 1 E 1 -1 14.604 0 0 3.0733 0 0 328.13926555382943 0 328.13926555382943 0 14.604093769761874 0 0 0 0 0 0 0 E 3.0733 - 1 + NaN NaN 93777.6 NaN 1654 1589 3243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3246 26.385 NaN 28030 35 0 4736.2 0.261 -1 SVLFLVACGGD 11 24 569.2859219291914 NaN 0 569.2855834960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _SVLFLVAC(Carbamidomethyl (C))GGD_ tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96613.3 NaN 1655 1589 3243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3248 26.39 NaN 251760 35 0 35656 0.411 + 9038 HPESERISM 9 61 543.2557842234844 1084.4970155137687 2 543.2556762695312 MULTI HCD FTMS 0 0 0 3247 119409.28125 0.9628549271987012 -4 0.05703163146972656 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 41.95555342248728 0.056367691549927025 1 HPESE[R{I|L}]A{M(Oxidation (M))|F} 9 1 + 65.838 0 0 6.0708 6.0708 91.065 0 0 0 45.03591878376909 14.89454989793387 14.89454989793387 19.719712763997563 0 0.5 0 1.0994850021680094 0 HPESE[R{I|L}]A{M(Oxidation (M))|F};HPE{[RE]|[WV]}{[TV]|[{I|L}S]}A{M(Oxidation (M))|F};[TP][HT]{[RE]|[WV]}E{[ES]|[DT]|[{I|L}C]} 6.0708;4.2525;0.77222 -;-;- 206 + NaN NaN 174801.7 NaN 1656 1590 3247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3250 26.398 NaN 23943 35 0 5029.3 0.327 -1 STFSCICM 8 18 511.1923961692913 NaN 0 511.1924743652344 PEAK HCD FTMS 0 0 0 3249 1327.559814453125 0.17253465488531713 1 -0.009977340698242188 1 2 Carbamidomethyl (C),Oxidation (M) _STFSC(Carbamidomethyl (C))IC(Carbamidomethyl (C))M(Oxidation (M))_ ENST00000296511.9_1_4:122589511-122589598:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106064.7 NaN 1657 1591 3249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3251 26.403 NaN 39318 35 0 10245 0.261 + -1 MMWPIPTP 8 21 494.7360714167036 NaN 0 494.7359924316406 PEAK HCD FTMS 0 0 0 3249 6137.0732421875 0.737351699260485 -14 0.1465167999267578 2 Oxidation (M) _M(Oxidation (M))MWPIPTP_ REV__ENST00000481808.1_1_10:104179940-104180057:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106656.6 NaN 1658 1591 3249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3255 26.423 NaN 114100 35 0 19811 0.327 -1 QPMQPTPSM 9 36 524.7253800892676 1047.436207245335 2 524.7251586914062 MULTI HCD FTMS 0 0 0 3254 45371.25390625 0.3592689102990202 -10 0.11032485961914062 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 18.1463463914782 0.20357593197100715 1 A 1 -1 6.9897 0 0 0.66732 0 0 223.94659650490377 749.4334810846311 973.380077589535 0 0 0 0 0 0 0 0 0 A 0.66732 - 1 + NaN NaN 101360.5 NaN 1659 1594 3254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3256 26.428 NaN 95466 35 0 12406 0.261 -1 WFTMILAL 8 27 505.77239863206086 1009.5302443309217 2 505.7722473144531 MULTI HCD FTMS 0 0 0 3254 7737.294921875 0.617681588520323 9 -0.14889144897460938 2 Oxidation (M) _WFTM(Oxidation (M))ILAL_ ENSG00000136840|ENST00000335791|ST6GALNAC4;ENST00000495983.1_1_9:130670673-130672537:-|nuORF 0.7936320650641473 0.540814922690045 1 E 1 -1 6.9897 0 0 0.69237 0 0 520.481429488928 356.9930627929611 877.4744922818891 0 0 0 0 0 0 0 0 0 E 0.69237 - 2 + NaN NaN 93720.2 NaN 1660 1594 3254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3257 26.431 NaN 40846 35 0 4721.5 0.261 -1 0 28 492.06891961860964 NaN 0 491.7608337402344 PEAK HCD FTMS 0 0 0 3254 5276.138671875 0.4788874863487223 24 -0.3630523681640625 3 NaN NaN 1 V 1 -1 3.0989 0 0 0.31554 0 0 571.8844385030412 308.14777551822505 880.0322140212663 0 0 0 0 0 0 0 0 0 V 0.31554 - 1 + NaN NaN 87594 NaN 1661 1594 3254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3258 26.435 NaN 33205 35 0 11186 0.261 -1 YNIMLECW 8 22 564.7467651367188 NaN 0 564.7467651367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YNIMLEC(Carbamidomethyl (C))W_ ENSG00000111816|ENST00000606080|FRK;nc|ENSG00000111816|P42685-2|FRK 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84611.1 NaN 1662 1594 3254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3260 26.44 NaN 586440 35 0 50395 0.327 + 3343 EELSGLDETI 10 84 553.2672343400287 1104.5199157468574 2 553.7554931640625 MULTI HCD FTMS 0 0 0 3259 26211.8046875 0.009014976069483106 130 -1.9080829620361328 1 Unmodified _EELSGLDETI_ ENSG00000109063|ENST00000583535|MYH3 19.256988751693697 0.33098864134661865 1 [PS]EEKQE{M(Oxidation (M))|F} 8 9 60.544 0 0 5.4815 0 0 0 127.09555753293183 127.09555753293183 28.37205316164642 0 0 0 0 0.5 1.5228787452803376 1.2971062485323517 0 [PS]EEKQE{M(Oxidation (M))|F} 5.4815 - 1283 NaN NaN 181153.3 NaN 1663 1595 3259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3261 26.445 NaN 213010 35 0 30207 0.263 -1 VAAKDVVM 8 44 424.73097217730896 847.4473914214179 2 424.7308349609375 MULTI HCD FTMS 0 0 0 3259 93440.984375 0.4639896548131041 -6 0.06314849853515625 2 Oxidation (M) _VAAKDVVM(Oxidation (M))_ ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10 29.081581746732265 0.3711897268585781 1 VAA[WR]V 6 -1 51.688 0 0 6.0992 0 0 0 162.02309595279533 162.02309595279533 51.687522094009 0 0 0 0 1.2302046884880937 1.3979400086720375 0 0 VAA[WR]V 6.0992 - 20 + NaN NaN 128660.4 NaN 1664 1595 3259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3262 26.448 NaN 25596 35 0 4656.7 0.261 + 25347 SDSYPRRKE 9 21 569.2859219291914 NaN 0 569.2871704101562 PEAK HCD FTMS 0 0 0 3259 8415.765625 1 0 0 3 Unmodified _SDSYPRRKE_ REV__ENSG00000104960|ENST00000391842|PTOV1;REV__ENST00000598632.5_1_19:50354098-50358367:+|nuORF;REV__ENST00000601501.5_1_19:50354350-50358367:+|nuORF;REV__ENST00000602040.5_1_19:50354666-50357992:+|nuORF;REV__nc|ENSG00000104960|Q86YD1-2|PTOV1 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82604.4 NaN 1665 1595 3259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3264 26.454 NaN 23750 35 0 5420.4 0.411 + -1 VLSCIFDM 8 29 500.7294616699219 NaN 0 500.7294616699219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _VLSC(Carbamidomethyl (C))IFDM(Oxidation (M))_ REV__ENSG00000119285|ENST00000366582|HEATR1 5.760428011301431 0.38822285293237185 1 YN 2 -1 4.9485 0 0 0.49513 0 0 318.49005361152496 400.8263033502563 719.3163569617813 0 0 0 0 0 0 0 0 0 YN 0.49513 - 4 + NaN NaN 85181.9 NaN 1666 1596 3263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3266 26.462 NaN 67177 35 0 6894.4 0.327 + 8499 HAEAVEQRL 9 27 526.7778054823253 1051.5410580314506 2 526.7776489257812 MULTI HCD FTMS 0 0 0 3265 25503.806640625 0.6096803213865468 3 -0.05028724670410156 1 Unmodified _HAEAVEQRL_ ENST00000578774.1_1_17:38517261-38520175:+|nuORF 8.155526934196011 0.2891920862272901 1 HAE 3 6 24.922 0 0 2.37 0 0 0 711.3800536126488 711.3800536126488 17.931825014007217 0 0 0 0 0.5 0 0 0 + HAE 2.37 + + 8 + NaN NaN 89264.7 NaN 1667 1597 3265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3267 26.466 NaN 15258 35 0 2846.3 0.261 + -1 YVFCADTPCD 10 18 624.2361778581404 NaN 0 624.236572265625 PEAK HCD FTMS 0 0 0 3265 7959.7353515625 0.7311898305486152 8 -0.14209556579589844 2 2 Carbamidomethyl (C) _YVFC(Carbamidomethyl (C))ADTPC(Carbamidomethyl (C))D_ REV__ENSG00000213996|ENST00000389363|TM6SF2;REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2;REV__TM6SF2|p.E330Rfs*41|1|0.07|ENSG00000213996|chr19:19264810-19264810|C/-|frameshift_variant 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94160 NaN 1668 1597 3265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3268 26.47 NaN 46950 35 0 9605.1 0.264 -1 GGWGPSSC 8 27 404.15889869661913 NaN 0 404.1492919921875 PEAK HCD FTMS 0 0 0 3265 2066.11376953125 0.4716264074167287 -3 0.0382537841796875 3 Carbamidomethyl (C) _GGWGPSSC(Carbamidomethyl (C))_ ENST00000262158.6_1_18:46447112-46447352:-|nuORF 0.7936320650641473 0.38822285293237185 1 Y 1 -1 1.9897 0 0 0.24677 0 0 465.975498953982 174.23760400943596 640.213102963418 0 0 0 0 0 0 0 0 0 Y 0.24677 - 1 + NaN NaN 85581.7 NaN 1669 1597 3265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3270 26.475 NaN 58054 35 0 6733.4 0.327 -1 EAVGVMATR 9 33 475.2422946753506 948.4700364175012 2 475.2421875 MULTI HCD FTMS 0 0 0 3269 25279.541015625 0.8054967292842065 3 -0.06038856506347656 1 Oxidation (M) _EAVGVM(Oxidation (M))ATR_ ENST00000398559.6_1_3:69101351-69101438:-|nuORF 4.897010918128616 0.31389406404703984 1 {[CP]|[EA]}VR{M(Oxidation (M))|F} 5 -1 22.218 0 0 2.3426 0 0 0 343.1733797662719 343.1733797662719 15.228787452803374 0 0 0 0 0 0 0 0 {[CP]|[EA]}VR{M(Oxidation (M))|F} 2.3426 - 10 + NaN NaN 86942.1 NaN 1670 1598 3269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3271 26.48 NaN 93095 35 0 26022 0.261 + 24061 RWYLLEYDF 9 25 435.5484148219333 NaN 0 435.5482177734375 PEAK HCD FTMS 0 0 0 3269 6795.212890625 0.36642770719393486 1 -0.023433685302734375 2 Unmodified _RWYLLEYDF_ tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98770.3 NaN 1671 1598 3269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3272 26.483 NaN 46179 35 0 4557.4 0.261 -1 GPDGGEEVSM 10 38 497.19511440357627 992.3756758739526 2 497.19488525390625 MULTI HCD FTMS 0 0 0 3269 11015.2041015625 0.26645052325512175 14 -0.22766685485839844 3 Oxidation (M) _GPDGGEEVSM(Oxidation (M))_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866|KLC1 12.240655878213236 0.39661705172222156 1 VS{M(Oxidation (M))|F} 3 -1 35.005 0 0 3.5274 0 0 641.2244740216812 0 641.2244740216812 0 28.015384402724592 0 0 0 0.8807196863200843 0 0 0 VS{M(Oxidation (M))|F} 3.5274 + + 18 NaN NaN 105660 NaN 1672 1598 3269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3273 26.486 NaN 25015 35 0 3777.7 0.261 + 2087 DFAETYGY 8 19 483.1978389457297 964.3811249582594 2 483.1965026855469 MULTI HCD FTMS 0 0 0 3269 1205.46044921875 0.008443805159413901 -16 0.18328857421875 4 Unmodified _DFAETYGY_ REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;REV__ENSG00000106804|ENST00000223642|C5 2.577480529830294 0.5381683276125971 1 V[RH] 3 -1 10.458 0 0 1.0844 0 0 554.1443218350157 0 554.1443218350157 0 10.45757490560675 0 0 0 0 0 0 0 V[RH] 1.0844 - 3 + NaN NaN 99828.9 NaN 1673 1598 3269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3274 26.49 NaN 66797 35 0 16712 0.261 + -1 KFIFFQAFN 9 34 401.8778357069083 NaN 0 401.878173828125 PEAK HCD FTMS 0 0 0 3269 5255.5478515625 0.0743046620917392 814 -18.956247329711914 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KFIFFQAFN_ REV__ENST00000465985.1_1_20:35526176-35532601:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104157.8 NaN 1674 1598 3269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3275 26.493 NaN 15375 35 0 3860.2 0.261 + -1 QHSIMHCCQ 9 17 600.7364501953125 NaN 0 600.7364501953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _QHSIMHC(Carbamidomethyl (C))C(Carbamidomethyl (C))Q_ REV__ENSG00000011114|ENST00000334746|BTBD7;REV__nc|ENSG00000011114|Q9P203-5|BTBD7 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96694.1 NaN 1675 1598 3269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3277 26.499 NaN 29733 35 0 6857 0.327 -1 FHDMMDWE 8 21 563.7018824021353 1125.3892118710705 2 563.7012329101562 MULTI HCD FTMS 0 0 0 3276 7264.72119140625 0.7901742041031713 -2 0.03677177429199219 1 Oxidation (M) _FHDM(Oxidation (M))MDWE_ DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;ENSG00000128512|ENST00000428084|DOCK4;ENST00000469898.1_7:111428716-111462476:-|nuORF;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 7.910154910731844 0.5302565402355366 1 D[PA]{M(Oxidation (M))|F} 4 -1 22.435 0 0 1.9935 0 0 677.2286244123062 0 677.2286244123062 0 22.43501263708417 0 0 0 0.9247425010840047 0 0 0 D[PA]{M(Oxidation (M))|F} 1.9935 - 13 NaN NaN 83674.6 NaN 1676 1599 3276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3278 26.503 NaN 17232 35 0 4990.8 0.261 + 14914 LLCCNNICNMM 11 17 636.2572631835938 NaN 0 636.2572631835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLCCNNICNMM_ tr|U7T2S8|U7T2S8_FUSNU(R)-2-hydroxyglutaryl-CoAdehydratasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00401PE=3SV=1 0 0.34212014346876374 1 {M(Oxidation (M))|F} 1 10 3.0989 0 0 0.24392 0 0 895.162383347853 225.23793970279533 1120.4003230506485 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.24392 + + 1 + NaN NaN 93279.5 NaN 1677 1599 3276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3279 26.507 NaN 12002 35 0 4896.9 0.261 + -1 LTPYRDCSH 9 10 574.7605590820312 NaN 0 574.7605590820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _LTPYRDC(Carbamidomethyl (C))SH_ REV__ENSG00000164458|ENST00000366876|TBXT;REV__nc|ENSG00000164458|O15178|TBXT 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88871.6 NaN 1678 1599 3276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3281 26.512 NaN 149690 35 0 17843 0.327 + 9039 HPESERISM 9 36 543.2557842234844 1084.4970155137687 2 543.2556762695312 MULTI HCD FTMS 0 0 0 3280 66827.296875 0.538860894177471 6 -0.0995941162109375 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 15.248480904072842 0.22861284681709862 1 HPE 3 6 31.198 0 0 2.8767 0 0 0 718.3200924231805 718.3200924231805 23.411290632962718 0 0 0 0 0.5 0 0 0 + HPE 2.8767 + + 9 + NaN NaN 105420.1 NaN 1679 1600 3280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3282 26.517 NaN 54942 35 0 8644 0.261 -1 VLMNCPEI 8 22 488.2350225523721 974.4554921715442 2 488.23492431640625 MULTI HCD FTMS 0 0 0 3280 24697.771484375 0.6721072130695148 8 -0.12059211730957031 2 Carbamidomethyl (C) _VLMNC(Carbamidomethyl (C))PEI_ ENSG00000145390|ENST00000692078|USP53 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83862.2 NaN 1680 1600 3280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3283 26.52 NaN 50220 35 0 6300 0.262 + 0 AAAAPGPCR 9 35 407.20381335412486 NaN 0 407.203857421875 PEAK HCD FTMS 0 0 0 3280 20071.873046875 0.4803145694311865 -66 0.81463623046875 3 Unmodified _AAAAPGPCR_ ENST00000405692.2_3_7:558637-559858:-|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81608.5 NaN 1681 1600 3280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3284 26.523 NaN 28509 35 0 5726.1 0.261 + 20599 PELSQVHR 8 21 483.26188427572185 964.5092156182437 2 483.2608947753906 MULTI HCD FTMS 0 0 0 3280 6247.5634765625 0.009505177218976577 122 -1.8094406127929688 4 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84783.2 NaN 1682 1600 3280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3285 26.527 NaN 21558 35 0 5475.2 0.261 -1 EADRTAIHEVM 11 16 644.3037683973155 1286.5929838614309 2 644.3038940429688 MULTI HCD FTMS 0 0 0 3280 8024.87890625 0.40853380009978846 -21 0.2437114715576172 5 Oxidation (M) _EADRTAIHEVM(Oxidation (M))_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 2.282774691075616 0.408909192180357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83894.1 NaN 1683 1600 3280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3286 26.53 NaN 10991 35 0 3394.2 0.261 + 25385 SEHTRDYRRG 10 11 638.8106875550487 1275.6068221768974 2 638.8099365234375 MULTI HCD FTMS 0 0 0 3280 2231.982666015625 0.5165304179555631 2 -0.03692626953125 6 Unmodified _SEHTRDYRRG_ ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85334.3 NaN 1684 1600 3280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3288 26.536 NaN 35590 35 0 4414.7 0.327 + 9401 HPTPRSPL 8 23 452.75325897193187 903.4919650106638 2 452.7531433105469 MULTI HCD FTMS 0 0 0 3287 21203.6875 0.8014700709144881 -5 0.08196258544921875 1 Unmodified _HPTPRSPL_ nc|ENSG00000151914|Q03001-3|DST 6.723162845929126 0.5320176132289695 1 HP 2 6 17.959 0 0 1.9877 0 0 0 666.3606051080686 666.3606051080686 17.95880017344075 0 0 0 0 0 0 0 0 + HP 1.9877 + + 2 + NaN NaN 78791.5 NaN 1685 1601 3287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3289 26.54 NaN 32789 35 0 5655.6 0.261 -1 0 27 469.32864488262436 468.32136841602437 1 469.328369140625 MULTI HCD FTMS 0 0 0 3287 13112.55859375 0.5162893896144903 37 -0.5302448272705078 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83435.6 NaN 1686 1601 3287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3290 26.544 NaN 25985 35 0 4515 0.261 + -1 YLAMYKFVS 9 23 569.2859219291914 NaN 0 569.2857055664062 PEAK HCD FTMS 0 0 0 3287 5500.318359375 0.6535731393274157 6 -0.08938217163085938 3 Oxidation (M) _YLAM(Oxidation (M))YKFVS_ REV__ENSG00000159363|ENST00000326735|ATP13A2;REV__ENST00000466561.1_1_1:17313027-17318334:-|nuORF;REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2;REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83300.6 NaN 1687 1601 3287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3292 26.549 NaN 257240 35 0 42944 0.327 + 22352 QPMQPTPSM 9 34 524.7253800892676 1047.436207245335 2 524.725341796875 MULTI HCD FTMS 0 0 0 3291 116735.703125 0.924363010583038 -2 0.03692626953125 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 58.678817012210395 0.019429721296335044 1 PS{M(Oxidation (M))|F} 3 6 40.445 0 0 3.8614 0 0 698.3056803251117 0 698.3056803251117 0 30.199178382953065 0 0 0 1 0 0.4247425010840047 0 + PS{M(Oxidation (M))|F} 3.8614 + + 30 + NaN NaN 118374.4 NaN 1688 1602 3291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3293 26.553 NaN 48119 35 0 7822.6 0.261 -1 0 32 476.1982712911341 475.19099482453413 1 476.19842529296875 MULTI HCD FTMS 0 0 0 3291 14883.4033203125 0.3911247613823053 -63 0.7830581665039062 2 NaN NaN 1 AA{M(Oxidation (M))|F} 3 -1 21.427 0 0 4.5091 0 0 168.06841899621224 0 168.06841899621224 0 21.42667503568731 0 0 0 0 0 0 0 AA{M(Oxidation (M))|F} 4.5091 - 6 + NaN NaN 90560.6 NaN 1689 1602 3291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3294 26.557 NaN 34833 35 0 6580.1 0.261 + 23665 RQAKRTTCDMV 11 18 436.88777426648494 NaN 0 436.87896728515625 PEAK HCD FTMS 0 0 0 3291 1589.9716796875 0.21798346042991368 -10 0.14041900634765625 3 Unmodified _RQAKRTTCDMV_ ENST00000453213.1_1_9:132260664-132265690:+|nuORF 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92507.2 NaN 1690 1602 3291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3295 26.56 NaN 14924 35 0 4041.1 0.261 + -1 SGYCYCQYR 9 16 600.2346762867176 NaN 0 600.2351684570312 PEAK HCD FTMS 0 0 0 3291 5786.73291015625 0.5589454637106093 1 -0.023424148559570312 4 Carbamidomethyl (C) _SGYCYC(Carbamidomethyl (C))QYR_ REV__FN1|p.R592S|1|0.17|ENSG00000115414|chr2:215419287-215419287|G/T|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79696.3 NaN 1691 1602 3291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3296 26.564 NaN 17907 35 0 5457 0.262 + 12600 KVEMGFGGGGG 11 13 498.23450246739606 994.4544520015921 2 498.73651123046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KVEMGFGGGGG_ ENSG00000236104|ENST00000431845|ZBTB22 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95385.8 NaN 1692 1602 3291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3297 26.567 NaN 31822 35 0 11724 0.261 + 23712 RQPVPLRRA 9 21 546.8424227317684 1091.6702925303366 2 547.34375 MULTI HCD FTMS 0 0 0 3291 2127.22216796875 0.24448842609324584 -2 0.03692626953125 6 Unmodified _RQPVPLRRA_ REV__ENST00000492561.1_1_22:39078186-39079843:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81377 NaN 1693 1602 3291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3299 26.572 NaN 402440 35 0 26140 0.411 + 9540 HRDYETATL 9 97 553.2672343400287 1104.5199157468574 2 553.7554931640625 MULTI HCD FTMS 0 0 0 3298 29206.9609375 0.010045094454692547 138 -2.122243881225586 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 18.1463463914782 0.20357593197100715 1 [PS]EEKQE{M(Oxidation (M))|F} 8 8 51.028 0 0 4.62 0 0 0 127.09632490506898 127.09632490506898 10.66416510421346 0 0 0 0 0 0 1.3723637474483468 0.5189301784845296 [PS]EEKQE{M(Oxidation (M))|F} 4.62 - 3262 NaN NaN 212519.8 NaN 1694 1603 3298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3301 26.581 NaN 222440 35 0 40067 0.327 -1 VAAKDVVM 8 38 424.73097217730896 847.4473914214179 2 424.7308654785156 MULTI HCD FTMS 0 0 0 3300 150818 0.7489004126793558 3 -0.04421806335449219 1 Oxidation (M) _VAAKDVVM(Oxidation (M))_ ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10 36.12702656103203 0.2806826090546818 1 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 8 -1 + 52.216 0 0 6.1616 6.1616 93.088 0 0 0 51.27426910580333 0.7403126772771884 0.7403126772771884 52.21639407645036 0 1.1861818737241734 1.3979400086720375 0 0 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 6.1616 - 35 + NaN NaN 114336.9 NaN 1695 1604 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3302 26.585 NaN 118410 35 0 15072 0.261 + 21921 QEAEAAQRL 9 51 508.26179338324044 1014.5090338332809 2 508.2619934082031 MULTI HCD FTMS 0 0 0 3300 19762.134765625 0.687242179235888 1 -0.023204803466796875 2 Unmodified _QEAEAAQRL_ ENSG00000105254|ENST00000221855|TBCB;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENST00000589308.1_1_19:36606815-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB 9.38312468134398 0.279288223203164 1 VQ{M(Oxidation (M))|F} 3 8 21.682 0 0 2.1372 0 0 622.2895985334 0 622.2895985334 0 5.880456295278405 0 0 0 0 0 0 0 VQ{M(Oxidation (M))|F} 2.1372 - 49 NaN NaN 114580.4 NaN 1696 1604 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3303 26.588 NaN 49033 35 0 5564.3 0.261 -1 LWLLEHLS 8 22 526.7936731201643 NaN 0 526.7774047851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LWLLEHLS_ ENST00000397292.7_1_9:26905609-26905660:-|nuORF 2.302733041254933 0.38822285293237185 1 SE 2 -1 8.5835 0 0 0.81625 0 0 132.20153397888424 700.2701510065061 832.4716849853903 0 0 0 0 0 0 0 0 0 SE 0.81625 - 3 + NaN NaN 79576.7 NaN 1697 1604 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3304 26.592 NaN 37363 35 0 5722.2 0.261 + 11775 KEDTPVRH 8 27 491.25914955881217 980.5037461844244 2 491.25897216796875 MULTI HCD FTMS 0 0 0 3300 9312.400390625 0.00406059735814165 216 -3.5520477294921875 4 Unmodified _KEDTPVRH_ ENSG00000180964|ENST00000372685|TCEAL8 2.302733041254933 0.5385759549224092 1 V[RH] 3 5 10.458 0 0 1.0666 0 0 570.2658749459463 0 570.2658749459463 0 4.9730248405664685 0 0 0 0 0 0 0 + V[RH] 1.0666 + + 6 + NaN NaN 78010 NaN 1698 1604 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3305 26.595 NaN 34618 35 0 3995.2 0.261 -1 WQRFPCCC 8 27 550.2170427849297 NaN 0 550.2176513671875 PEAK HCD FTMS 0 0 0 3300 10185.5693359375 0.6584125814981043 -10 0.15714454650878906 5 Carbamidomethyl (C) _WQRFPCCC(Carbamidomethyl (C))_ ENST00000556553.5_1_14:88851807-88857770:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91856.4 NaN 1699 1604 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3306 26.598 NaN 41117 35 0 11301 0.261 + -1 DPERNAQL 8 25 492.74077022667655 983.4669875201531 2 493.7435302734375 MULTI HCD FTMS 0 0 0 3300 7332.048828125 0.04465627880525303 -22 0.28884124755859375 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DPERNAQL_ REV__ENSG00000100918|ENST00000611366|REC8;REV__ENST00000568093.3_1_15:40528004-40528040:+|nuORF;REV__nc|ENSG00000100918|O95072-2|REC8 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95037.4 NaN 1700 1604 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3309 26.611 NaN 63636 35 0 5462.1 0.327 + 19633 NVEEADAAM 9 28 483.1978389457297 964.3811249582594 2 483.19732666015625 MULTI HCD FTMS 0 0 0 3308 46648.78125 0.32675748097285123 -8 0.13654327392578125 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 49.55428908609986 0.03219431099695407 1 {[NV]|[RG]}E{[CP]|[EA]}DAA{M(Oxidation (M))|F} 9 0 + 53.126 0 0 5.5089 5.5089 92.02 0 0 0 3.1336373073770574 40.67918449261214 3.1336373073770574 53.12645944157907 0 2.4247425010840047 0 0 0.3807196863200844 + + {[NV]|[RG]}E{[CP]|[EA]}DAA{M(Oxidation (M))|F} 5.5089 + + 80 NaN NaN 99070.4 NaN 1701 1606 3308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3310 26.616 NaN 54762 35 0 8296.6 0.261 + -1 LECPTDAM 8 20 476.6909590723389 951.3673652114778 2 476.691162109375 MULTI HCD FTMS 0 0 0 3308 16479.80859375 0.721340814103077 3 -0.04756927490234375 2 Carbamidomethyl (C),Oxidation (M) _LEC(Carbamidomethyl (C))PTDAM(Oxidation (M))_ REV__ENSG00000139718|ENST00000604567|SETD1B;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B 9.347437153973935 0.5250182646323369 1 A{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.2552 0 0 715.284584305031 0 715.284584305031 0 30.969100130080562 0 0 0 1 0 0 0 A{M(Oxidation (M))|F} 3.2552 + + 6 + NaN NaN 95591.6 NaN 1702 1606 3308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3311 26.619 NaN 41436 35 0 11543 0.261 + 35235 YVNKYVHA 8 24 497.259260592201 NaN 0 497.2591552734375 PEAK HCD FTMS 0 0 0 3308 16274.9609375 1 0 0 3 Unmodified _YVNKYVHA_ ENST00000312184.5_1_8:74894017-74894116:+|nuORF 5.760428011301431 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105222.3 NaN 1703 1606 3308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3314 26.632 NaN 110230 35 0 15796 0.327 -1 VRSYESQM 8 46 508.22917319313734 1014.4437934530747 2 508.212158203125 MULTI HCD FTMS 0 0 0 3313 10472.291015625 0.5158131786878802 5 -0.08364105224609375 1 Oxidation (M) _VRSYESQM(Oxidation (M))_ ENSG00000084090|ENST00000337288|STARD7 8.593279151180031 0.5292430274356741 1 Q{M(Oxidation (M))|F} 2 -1 24.949 0 0 2.4593 0 0 721.3396502419404 0 721.3396502419404 0 0.4845500650402812 0 0 0 0.4247425010840047 0 0 0.4247425010840047 Q{M(Oxidation (M))|F} 2.4593 + + 30 + NaN NaN 97051.7 NaN 1704 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3315 26.637 NaN 135440 35 0 15555 0.261 + 25362 SEAQPYRSL 9 42 525.7630714933856 NaN 0 525.7515869140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SEAQPYRSL_ ENSG00000142235|ENST00000600059|LMTK3 4.3292370932331545 0.2742679634796037 1 A 1 8 4.6041 0 0 0.43869 0 0 287.1333684732961 688.3158376304298 975.4492061037258 0 0 0 0 0 0 0 0 0 + A 0.43869 + + 1 + NaN NaN 111987.1 NaN 1705 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3316 26.64 NaN 39423 35 0 5773.2 0.261 + 3141 EARIDEIK 8 29 487.2692726155877 972.5239922979754 2 487.26922607421875 MULTI HCD FTMS 0 0 0 3313 10183.224609375 0.2681478489381084 -6 0.08366584777832031 3 Unmodified _EARIDEIK_ REV__ENSG00000157601|ENST00000398598|MX1 3.944395688203298 0.5361403129012058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99353.2 NaN 1706 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3317 26.644 NaN 29386 35 0 5119.9 0.261 + 26387 SSSPHAPESE 10 25 514.2201473982469 1026.4257418632938 2 514.219970703125 MULTI HCD FTMS 0 0 0 3313 5274.91162109375 0.3049545270494726 -12 0.17911529541015625 4 Unmodified _SSSPHAPESE_ ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L} 1 10 4.6041 0 0 0.44856 0 0 763.3926435740344 146.92148767642814 910.3141312504625 0 0 0 0 0 0 0 0 0 {I|L} 0.44856 - 2 + NaN NaN 91853.7 NaN 1707 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3318 26.647 NaN 26334 35 0 3851.3 0.261 + 26611 SWFTCTGAK 9 25 500.72972095652693 999.4448889798539 2 500.72967529296875 MULTI HCD FTMS 0 0 0 3313 7755.3671875 1 0 0 5 Unmodified _SWFTCTGAK_ nc|ENSG00000231004|P0C854|CECR9 0.45834013312273997 0.3475424938045562 1 Q 1 9 3.9794 0 0 0.39816 0 0 481.5585497237976 386.79474817447505 868.3532978982727 0 0 0 0 0 0 0 0 0 Q 0.39816 - 1 + NaN NaN 82863.4 NaN 1708 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3319 26.65 NaN 31719 35 0 8290 0.261 + 25412 SEQSRNAVEEL 11 14 631.3048217187555 1260.595090504311 2 631.304443359375 MULTI HCD FTMS 0 0 0 3313 10434.23828125 0.13742424127057556 -7 0.0971527099609375 6 Unmodified _SEQSRNAVEEL_ REV__ENSG00000161681|ENST00000293441|SHANK1;REV__nc|ENSG00000161681|Q9Y566-3|SHANK1 0.9622753412299311 0.4147004537482263 1 SYY 3 -1 10.458 0 0 0.82957 0 0 829.4288197248062 0 829.4288197248062 0 10.45757490560675 0 0 0 0 0 0 0 SYY 0.82957 - 1 NaN NaN 103472.3 NaN 1709 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3320 26.654 NaN 27779 35 0 9201.9 0.262 + 23779 RRMQQMAGH 9 16 557.771484375 NaN 0 557.771484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RRMQQMAGH_ ENSG00000140488|ENST00000287202|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;nc|ENSG00000140488|Q96J87-4|CELF6 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95699.6 NaN 1710 1608 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3322 26.659 NaN 55672 35 0 5303.6 0.327 + 9040 HPESERISM 9 27 543.2557842234844 1084.4970155137687 2 543.2557373046875 MULTI HCD FTMS 0 0 0 3321 18813.28515625 0.15170063934615216 15 -0.22023582458496094 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 1 HPE 3 6 31.198 0 0 2.8767 0 0 0 718.3230775832291 718.3230775832291 24.20818753952375 0 0 0 0 0.5 0 0 0 + HPE 2.8767 + + 5 + NaN NaN 92825.5 NaN 1711 1609 3321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3323 26.664 NaN 110230 35 0 16271 0.261 + 14307 LDHEQVGSM 9 52 508.22917319313734 1014.4437934530747 2 508.2384338378906 MULTI HCD FTMS 0 0 0 3321 14741.9140625 0.7261136594825488 6 -0.08731269836425781 2 Unmodified _LDHEQVGSM_ ENSG00000196998|ENST00000376372|WDR45;ENST00000376357.1_1_X:48935155-48937742:-|nuORF;nc|ENSG00000196998|Q9Y484-2|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45 6.723162845929126 0.3000504726104499 1 VQ{M(Oxidation (M))|F} 3 7 23.188 0 0 2.2857 0 0 622.2905750959 0 622.2905750959 0 2.2184874961635614 0 0 0 0 0 0 0 VQ{M(Oxidation (M))|F} 2.2857 - 31 NaN NaN 113183.6 NaN 1712 1609 3321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3325 26.669 NaN 179620 35 0 30400 0.327 -1 QPMQPTPSM 9 36 524.7253800892676 1047.436207245335 2 524.725341796875 MULTI HCD FTMS 0 0 0 3324 78420.65625 0.620968152524224 6 -0.09372138977050781 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 37.97399986684836 0.07464525285885698 1 G[PS]{M(Oxidation (M))|F} 4 -1 23.06 0 0 2.2015 0 0 641.2725697248062 0 641.2725697248062 0 14.960762528683702 0 0 0 0.9247425010840047 0 0 0 G[PS]{M(Oxidation (M))|F} 2.2015 - 17 NaN NaN 111462.2 NaN 1713 1610 3324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3326 26.674 NaN 31118 35 0 4747 0.261 + 8849 HLPVADPR 8 24 452.75325897193187 903.4919650106638 2 452.75299072265625 MULTI HCD FTMS 0 0 0 3324 13784.8134765625 0.5210468902922446 4 -0.06699562072753906 2 Unmodified _HLPVADPR_ ENST00000570769.5_1_16:3707099-3707303:+|nuORF 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93557 NaN 1714 1610 3324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3327 26.677 NaN 80271 35 0 15691 0.261 + -1 RRMHRYKD 8 31 401.8778357069083 NaN 0 401.8777160644531 PEAK HCD FTMS 0 0 0 3324 7288.55517578125 0.10304798753043606 826 -19.444250106811523 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RRMHRYKD_ REV__ENSG00000070047|ENST00000264555|PHRF1;REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1;REV__PHRF1|p.A1622V|1|0.11|ENSG00000070047|chr11:611692-611692|C/T|missense_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82590 NaN 1715 1610 3324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3328 26.681 NaN 12629 35 0 4832.5 0.261 + -1 ELDAAEPLRNC 11 9 644.3037683973155 1286.5929838614309 2 644.304443359375 MULTI HCD FTMS 0 0 0 3324 8712.224609375 0.44352547478552345 -11 0.17084121704101562 4 Carbamidomethyl (C) _ELDAAEPLRNC(Carbamidomethyl (C))_ REV__ENSG00000235718|ENST00000619721|MFRP;REV__nc|ENSG00000235718|Q9BY79-2|MFRP 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75977.8 NaN 1716 1610 3324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3329 26.684 NaN 29324 35 0 9451.2 0.262 -1 HRAICRPM 8 19 528.7646820921155 NaN 0 528.7643432617188 PEAK HCD FTMS 0 0 0 3324 6333.43212890625 0.9343696481746867 1 -0.019933700561523438 5 Carbamidomethyl (C),Oxidation (M) _HRAIC(Carbamidomethyl (C))RPM(Oxidation (M))_ ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85843.6 NaN 1717 1610 3324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3331 26.689 NaN 59783 35 0 8065.8 0.327 + -1 SCRVVCCRP 9 24 540.2501613781187 NaN 0 540.2609252929688 PEAK HCD FTMS 0 0 0 3330 2312.75732421875 1 0 0 1 Carbamidomethyl (C) _SCRVVC(Carbamidomethyl (C))CRP_ REV__nc|ENSG00000129351|Q12906-3|ILF3 1.6526216038709556 0.28723846860855273 1 H 1 -1 3.9794 0 0 0.36898 0 0 443.5148358404186 494.8933199518188 938.4081557922374 0 0 0 0 0 0 0 0 0 H 0.36898 - 1 + NaN NaN 100637.6 NaN 1718 1611 3330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3332 26.694 NaN 23695 35 0 5661.8 0.261 + 33845 YLKVSILRT 9 17 546.8424227317684 1091.6702925303366 2 547.3441162109375 MULTI HCD FTMS 0 0 0 3330 3745.705078125 0.43050582724733666 5 -0.07378768920898438 2 Unmodified _YLKVSILRT_ ENST00000265271.6_1_5:145598648-145603040:+|nuORF 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83721 NaN 1719 1611 3330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3333 26.697 NaN 40335 35 0 11650 0.261 + 8107 GLECTDLICY 10 25 565.2495727539062 NaN 0 565.2495727539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _GLECTDLICY_ ENST00000447136.1_2_7:2376752-2393878:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82824.9 NaN 1720 1611 3330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3335 26.703 NaN 224730 35 0 18024 0.327 + -1 LDMPLQEIM 9 56 553.2672343400287 1104.5199157468574 2 553.7554321289062 MULTI HCD FTMS 0 0 0 3334 22221.974609375 0.0076427614087827885 147 -2.3018550872802734 1 Oxidation (M) _LDMPLQEIM(Oxidation (M))_ REV__ENSG00000071243|ENST00000315870|ING3;REV__nc|ENSG00000071243|Q9NXR8-2|ING3;REV__nc|ENSG00000071243|Q9NXR8-3|ING3 7.289230182591677 0.29575926068275815 1 PEEKQEEM 8 -1 29.351 0 0 2.6574 0 0 86.0550237591478 0 86.0550237591478 0 -6.870221870873721 -6.870221870873721 0 0 0.4916440611282626 0 0.4247425010840047 0 PEEKQEEM 2.6574 - 392 + NaN NaN 122588.3 NaN 1721 1612 3334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3336 26.707 NaN 38717 35 0 6203 0.263 -1 LPFLCHMCH 9 23 410.84608612223974 1229.5164289669192 3 410.8460388183594 MULTI HCD FTMS 0 0 0 3334 9502.8798828125 0.82486850437019 2 -0.033603668212890625 2 2 Carbamidomethyl (C),Oxidation (M) _LPFLC(Carbamidomethyl (C))HM(Oxidation (M))C(Carbamidomethyl (C))H_ STYXL1|p.R226C|1|0.21|ENSG00000127952|chr7:76003779-76003779|G/A|missense_variant 0.26902006276349055 0.3489776809129786 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75599.8 NaN 1722 1612 3334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3337 26.711 NaN 9983.9 35 0 4274.4 0.261 -1 TTEMEDTDIE 10 8 600.2346762867176 NaN 0 600.2348022460938 PEAK HCD FTMS 0 0 0 3334 5756.45751953125 0.5560211379270207 11 -0.16836929321289062 3 Oxidation (M) _TTEM(Oxidation (M))EDTDIE_ ENSG00000177683|ENST00000415914|THAP5;nc|ENSG00000177683|Q7Z6K1-2|THAP5 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94127.7 NaN 1723 1612 3334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3339 26.716 NaN 39531 35 0 8276.6 0.327 -1 0 23 476.1982712911341 475.19099482453413 1 476.1982727050781 MULTI HCD FTMS 0 0 0 3338 13346.8935546875 0.3507464283822531 -52 0.6683006286621094 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82800.8 NaN 1724 1613 3338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3340 26.721 NaN 33732 35 0 4756 0.261 -1 0 23 469.32864488262436 468.32136841602437 1 469.32843017578125 MULTI HCD FTMS 0 0 0 3338 9626.72265625 0.37903927968354656 49 -0.7341842651367188 2 NaN NaN 1 R 1 -1 3.0989 0 0 0.66171 0 0 168.18890489238998 141.00751672916252 309.19642162155253 0 0 0 0 0 0 0 0 0 R 0.66171 - 1 + NaN NaN 80471.4 NaN 1725 1613 3338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3341 26.724 NaN 28980 35 0 5051 0.261 + -1 LLWFLMTS 8 19 526.7778054823253 1051.5410580314506 2 526.7780151367188 MULTI HCD FTMS 0 0 0 3338 9376.37890625 0.22414668467171403 19 -0.2769012451171875 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLWFLMTS_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|11;REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|32;REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|31;REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|31;REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|35;REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|27;REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|34;REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|34;REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|23;REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|315|3|anti-sense;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|175|1|anti-sense;REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|248|2|anti-sense;REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|128|3|anti-sense 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93461.8 NaN 1726 1613 3338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3342 26.728 NaN 24527 35 0 5992 0.261 -1 FHDMMDWE 8 14 563.7018824021353 1125.3892118710705 2 563.7017211914062 MULTI HCD FTMS 0 0 0 3338 6884.3466796875 0.748801366916516 12 -0.1896820068359375 4 Oxidation (M) _FHDM(Oxidation (M))MDWE_ DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;ENSG00000128512|ENST00000428084|DOCK4;ENST00000469898.1_7:111428716-111462476:-|nuORF;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99053.7 NaN 1727 1613 3338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3343 26.731 NaN 31889 35 0 4929.6 0.261 + -1 LHLLMCFSE 9 25 583.2723870123876 NaN 0 583.284912109375 PEAK HCD FTMS 0 0 0 3338 2592.90966796875 0.48470325853169827 2 -0.030242919921875 5 Carbamidomethyl (C),Oxidation (M) _LHLLM(Oxidation (M))C(Carbamidomethyl (C))FSE_ REV__ENSG00000160352|ENST00000456283|ZNF714;REV__ENST00000601416.1_19:21281704-21301132:+|nuORF;REV__nc|ENSG00000160352|Q96N38-2|ZNF714;REV__nc|ENSG00000160352|Q96N38|ZNF714 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88263.9 NaN 1728 1613 3338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3345 26.736 NaN 39055 35 0 5201.5 0.327 + 17780 MERALNSYFEP 11 30 452.8797507423563 NaN 0 452.869873046875 PEAK HCD FTMS 0 0 0 3344 2059.83740234375 0.42979293248368033 -5 0.07715797424316406 1 Unmodified _MERALNSYFEP_ ENSG00000111802|ENST00000378198|TDP2;ENST00000478507.1_1_6:24666755-24667129:-|nuORF;nc|ENSG00000111802|O95551-2|TDP2 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85929.2 NaN 1729 1614 3344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3346 26.741 NaN 35897 35 0 7380.4 0.261 + -1 CEDVDMCM 8 21 509.65324685749573 1017.2919407817915 2 509.65283203125 MULTI HCD FTMS 0 0 0 3344 10483.6865234375 0.7656468853720103 -5 0.07715797424316406 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))EDVDMCM(Oxidation (M))_ REV__ENSG00000138829|ENST00000262464|FBN2 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.1616 0 0 852.245628381204 0 852.245628381204 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.1616 + + 2 + NaN NaN 84032.2 NaN 1730 1614 3344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3348 26.746 NaN 184140 35 0 16650 0.327 + 19634 NVEEADAAM 9 39 483.1978389457297 964.3811249582594 2 483.1974792480469 MULTI HCD FTMS 0 0 0 3347 128194.9140625 0.8979580188409241 1 -0.016571044921875 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 99.75527289724121 0.004270341300239591 1 {[NV]|[RG]}EEADAA{M(Oxidation (M))|F} 9 0 + 82.885 0 0 8.5947 8.5947 97.91 0 0 0 5.6424927368725974 10.810384486277798 5.6424927368725974 82.88540967689293 0 2.6989700043360187 0 0.7302046884880937 0 + + {[NV]|[RG]}EEADAA{M(Oxidation (M))|F} 8.5947 + + 165 + NaN NaN 116049.8 NaN 1731 1615 3347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3349 26.751 NaN 116730 35 0 12265 0.261 + 27704 TANQHSDVI 9 38 492.74077022667655 983.4669875201531 2 492.7406311035156 MULTI HCD FTMS 0 0 0 3347 70568.78125 0.06015883609353808 -10 0.1426677703857422 2 Unmodified _TANQHSDVI_ ENSG00000128513|ENST00000357628|POT1;nc|ENSG00000128513|Q9NUX5-2|POT1 21.536976647645854 0.1742816388551942 1 [TA]Y 3 7 26.923 0 0 2.7376 0 0 0 645.2920356981406 645.2920356981406 5.954387282529794 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 [TA]Y 2.7376 - 10 NaN NaN 115791.3 NaN 1732 1615 3347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3350 26.754 NaN 27672 35 0 4664.9 0.261 + -1 RWCFWTLP 8 14 583.2842899547325 1164.5540269762648 2 583.7854614257812 MULTI HCD FTMS 0 0 0 3347 4305.46826171875 0.6161159591631677 -4 0.057216644287109375 3 Carbamidomethyl (C) _RWC(Carbamidomethyl (C))FWTLP_ REV__ENST00000294785.9_1_1:160318860-160319343:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92873.2 NaN 1733 1615 3347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3351 26.758 NaN 31654 35 0 11851 0.261 + 10246 IILRWCCAL 9 20 545.7979125976562 NaN 0 545.7979125976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _IILRWCCAL_ REV__ENST00000522658.5_1_8:101716602-101717242:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93857.9 NaN 1734 1615 3347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3353 26.763 NaN 25242 35 0 5651.4 0.327 -1 WQRFPCCC 8 16 550.2170427849297 NaN 0 550.2167358398438 PEAK HCD FTMS 0 0 0 3352 8813.5 0.5697196784630626 2 -0.023464202880859375 1 Carbamidomethyl (C) _WQRFPC(Carbamidomethyl (C))CC_ ENST00000556553.5_1_14:88851807-88857770:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80100.4 NaN 1735 1616 3352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3354 26.768 NaN 39698 35 0 11360 0.261 + 8818 HKGQYRAV 8 20 479.763958768139 NaN 0 479.7638244628906 PEAK HCD FTMS 0 0 0 3352 4491.75146484375 0.8205340196993663 1 -0.010145187377929688 2 Unmodified _HKGQYRAV_ ENSG00000112763|ENST00000312541|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1 0.6903765706972694 0.38822285293237185 1 N 1 8 0.48455 0 0 0.050605 0 0 699.2559621145999 141.19407068424064 840.4500327988405 0 0 0 0 0 0 0 0 0 N 0.050605 - 1 + NaN NaN 86905.7 NaN 1736 1616 3352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3356 26.773 NaN 111110 35 0 23465 0.327 + 4089 ESQSPDTTIQR 11 30 631.3048217187555 1260.595090504311 2 631.3045654296875 MULTI HCD FTMS 0 0 0 3355 73407.59375 0.9668154591332446 2 -0.021066665649414062 1 Unmodified _ESQSPDTTIQR_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 22.774965066868997 0.25864339442684914 1 {[ES]|[DT]|[{I|L}C]}QS[DP]TT{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 11 0 + 32.267 0 0 2.5597 2.5597 82.864 0 0 0 17.562220079826048 7.3675856522541885 7.3675856522541885 9.128498242811006 0 0.3807196863200844 0 0 0 + + {[ES]|[DT]|[{I|L}C]}QS[DP]TT{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};{[ES]|[DT]|[{I|L}C]}[AG]S[DP]TT{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 2.5597;1.8355 +;- + 39 + NaN NaN 112782.9 NaN 1737 1617 3355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3357 26.778 NaN 40916 35 0 6304.1 0.263 + 12353 KNINEDKL 8 26 487.2692726155877 972.5239922979754 2 487.2693176269531 MULTI HCD FTMS 0 0 0 3355 24845.04296875 0.6542274264197024 3 -0.031011581420898438 2 Unmodified _KNINEDKL_ tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1 10.823927491677226 0.514154816617796 1 K{I|L} 2 6 25.969 0 0 2.6703 0 0 713.334764549025 0 713.334764549025 0 23.979400086720375 0 0 0 0.5 0 0 0 + K{I|L} 2.6703 + + 4 NaN NaN 95633.1 NaN 1738 1617 3355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3358 26.781 NaN 45370 35 0 8834.9 0.261 + 26388 SSSPHAPESE 10 26 514.2201473982469 1026.4257418632938 2 514.2194213867188 MULTI HCD FTMS 0 0 0 3355 10844.158203125 0.6269252214310926 -3 0.03687095642089844 3 Unmodified _SSSPHAPESE_ ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF 5.731851221503515 0.44496410492002586 1 SE 2 8 25.969 0 0 2.5301 0 0 792.340610514955 0 792.340610514955 0 20.48455006504028 0 0 0 0.5 0 0 0 + SE 2.5301 + + 3 NaN NaN 81515.9 NaN 1739 1617 3355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3361 26.794 NaN 75883 35 0 15269 0.327 + 9315 HPQPGSQAL 9 30 467.7405936977521 933.4666344623042 2 467.7402038574219 MULTI HCD FTMS 0 0 0 3360 37265.859375 0.7827956064601073 -4 0.04778289794921875 1 Unmodified _HPQPGSQAL_ ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28 16.149105407346934 0.22083165093524068 1 C(Carbamidomethyl (C))A{I|L} 3 7 35.445 0 0 3.7972 0 0 571.298143455275 0 571.298143455275 0 16.18054082491639 0 0 0 0.9247425010840047 0 0 0 C(Carbamidomethyl (C))A{I|L} 3.7972 - 16 NaN NaN 109284.7 NaN 1740 1619 3360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3362 26.799 NaN 79595 35 0 11624 0.261 -1 QPMQPTPSM 9 23 524.7253800892676 1047.436207245335 2 524.7252197265625 MULTI HCD FTMS 0 0 0 3360 23441.173828125 0.1856171970640704 15 -0.2201824188232422 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97470.9 NaN 1741 1619 3360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3364 26.804 NaN 75729 35 0 17057 0.327 + -1 NELDLHMQ 8 34 508.22917319313734 1014.4437934530747 2 508.2384948730469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _NELDLHM(Oxidation (M))Q_ REV__ENSG00000112379|ENST00000251691|ARFGEF3 2.577480529830294 0.5381683276125971 1 VQ{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.5825 0 0 622.2880930745907 0 622.2880930745907 0 17.32902204431447 0 0 0 0 0 0 0 VQ{M(Oxidation (M))|F} 2.5825 - 19 NaN NaN 102409.7 NaN 1742 1620 3363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3365 26.809 NaN 34529 35 0 6171.4 0.261 -1 EADRTAIHEVM 11 21 644.3037683973155 1286.5929838614309 2 644.3031005859375 MULTI HCD FTMS 0 0 0 3363 18902.9609375 0.9623196256482122 -1 0.009944915771484375 2 Oxidation (M) _EADRTAIHEVM(Oxidation (M))_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 6.630372943996041 0.3898421031449734 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6298 0 0 1022.4788448970111 0 1022.4788448970111 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6298 + + 2 NaN NaN 99381.2 NaN 1743 1620 3363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3366 26.812 NaN 28526 35 0 4191.1 0.261 + -1 MCALMCAEY 9 20 562.1996406718212 1122.3847284104422 2 562.199951171875 MULTI HCD FTMS 0 0 0 3363 6069.705078125 0.3446020689725528 -22 0.32915306091308594 3 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))CALM(Oxidation (M))C(Carbamidomethyl (C))AEY_ REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 K 1 -1 5.4846 0 0 0.48865 0 0 785.3161686954016 205.9455507867797 991.2617194821813 0 0 0 0 0 0 0 0 0 K 0.48865 - 1 + NaN NaN 86870.2 NaN 1744 1620 3363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3367 26.815 NaN 71744 35 0 17277 0.264 + 30261 VKFLFHSYY 9 33 401.8778357069083 NaN 0 401.878173828125 PEAK HCD FTMS 0 0 0 3363 6341.96826171875 0.08966483076420759 836 -19.768680572509766 4 Unmodified _VKFLFHSYY_ REV__ATXN10-TUBGCP6|1|fusion;REV__ATXN10-TUBGCP6|2|fusion;REV__ENSG00000128159|ENST00000248846|TUBGCP6;REV__ENST00000439308.6_1_22:50656167-50658651:-|nuORF;REV__ENST00000491449.5_1_22:50656167-50658502:-|nuORF;REV__ENST00000498611.5_1_22:50656167-50657252:-|nuORF;REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6;REV__nc|ENSG00000128159|Q96RT7-3|TUBGCP6 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90704.2 NaN 1745 1620 3363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3368 26.819 NaN 36872 35 0 11418 0.261 + -1 RRCWQGPAP 9 22 564.2786790591138 NaN 0 564.7598266601562 PEAK HCD FTMS 0 0 0 3363 3362.252197265625 0.5266417103228052 3 -0.06688308715820312 5 Carbamidomethyl (C) _RRC(Carbamidomethyl (C))WQGPAP_ REV__ENST00000315249.11_1_17:33339131-33343450:-|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82838.3 NaN 1746 1620 3363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3370 26.824 NaN 97668 35 0 15114 0.327 -1 STMSTNGIPR 10 38 540.2610001028769 1078.5074472725537 2 540.2607421875 MULTI HCD FTMS 0 0 0 3369 34162.2890625 0.7550726577157219 2 -0.0468902587890625 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 19.361941925380144 0.3300069447713393 1 {[MG]|[TS]}{M(Oxidation (M))|F}{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 10 -1 + 9.8945 0 0 0.91743 0.91743 84.439 0 0 0 4.436974992327124 0.9421249706470274 0.9421249706470274 9.89454989793387 0 0.5 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 0.91743 + + 10 + NaN NaN 88128.9 NaN 1747 1621 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3371 26.829 NaN 99685 35 0 18002 0.263 + -1 GTGCCVDLFDA 11 38 405.49926463531875 1213.4759645061563 3 405.4996643066406 MULTI HCD FTMS 0 0 0 3369 24011.376953125 0.791634199264518 -1 0.019992828369140625 2 2 Carbamidomethyl (C) _GTGC(Carbamidomethyl (C))C(Carbamidomethyl (C))VDLFDA_ REV__tr|U7T6R6|U7T6R6_FUSNUDemethylmenaquinonemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=menGPE=3SV=1 1.3296431237094175 0.4130893034510334 1 Q 1 -1 6.9897 0 0 0.57601 0 0 845.3433315507765 237.05182825260002 1082.3951598033766 0 0 0 0 0 0 0 0 0 Q 0.57601 - 2 + NaN NaN 95698.9 NaN 1748 1621 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3372 26.832 NaN 29596 35 0 5508.4 0.261 + -1 ETCMEPRFE 9 23 607.7457449898822 1213.4769370465642 2 607.74609375 MULTI HCD FTMS 0 0 0 3369 9723.705078125 0.6659104533989203 -2 0.029937744140625 3 Carbamidomethyl (C),Oxidation (M) _ETC(Carbamidomethyl (C))M(Oxidation (M))EPRFE_ REV__ENSG00000132792|ENST00000361383|CTNNBL1;REV__ENST00000473857.5_1_20:36384780-36460672:+|nuORF;REV__nc|ENSG00000132792|Q8WYA6-2|CTNNBL1;REV__nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 0.5247636613948944 0.34703895399870666 1 S 1 -1 16.99 0 0 1.4001 0 0 886.4211947143361 237.00167261295158 1123.4228673272878 0 0 0 0 0 1 0 0 0 S 1.4001 - 2 + NaN NaN 84594.2 NaN 1749 1621 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3373 26.836 NaN 36958 35 0 3572.6 0.261 -1 MRTERTSF 8 26 543.2557842234844 1084.4970155137687 2 543.7426147460938 MULTI HCD FTMS 0 0 0 3369 5360.3837890625 0.07905851026259424 30 -0.4383697509765625 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RTERTSF_ CON__A2I7N3 0.6903765706972694 0.5409681170271811 1 V 1 -1 5.4846 0 0 0.50572 0 0 171.10664793739994 811.3009127252561 982.4075606626561 0 0 0 0 0 0 0 0 0 V 0.50572 - 2 + NaN NaN 93275.2 NaN 1750 1621 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3374 26.839 NaN 34550 35 0 5145.2 0.261 + 25309 SCECEGPMC 9 20 479.64278459418614 957.2710162551723 2 479.64263916015625 MULTI HCD FTMS 0 0 0 3369 5144.703125 0.3740327426752771 -5 0.06114959716796875 5 Unmodified _SCECEGPMC_ REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF 0 0.3510170533115441 1 H 1 -1 1.9897 0 0 0.20785 0 0 478.36453539755354 338.8279207818969 817.1924561794505 0 0 0 0 0 0 0 0 0 H 0.20785 - 3 + NaN NaN 92143.4 NaN 1751 1621 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3375 26.842 NaN 13758 35 0 4419.9 0.261 + -1 PMCTQMWTE 9 13 600.2318457325418 NaN 0 600.2300415039062 PEAK HCD FTMS 0 0 0 3369 2187.695068359375 0.6086679769069138 1 -0.023468017578125 6 Carbamidomethyl (C),Oxidation (M) _PMC(Carbamidomethyl (C))TQM(Oxidation (M))WTE_ REV__ENSG00000008838|ENST00000394128|MED24;REV__ENST00000495586.1_1_17:38183047-38183398:-|nuORF;REV__nc|ENSG00000008838|O75448-2|MED24 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79977.5 NaN 1752 1621 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3377 26.848 NaN 146650 35 0 8606.7 0.327 + 9541 HRDYETATL 9 41 553.2672343400287 1104.5199157468574 2 553.75537109375 MULTI HCD FTMS 0 0 0 3376 24820.185546875 0.008536359148590522 157 -2.4799976348876953 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 6.2057823575117 0.30397260197431997 1 H{I|L} 2 7 16.198 0 0 1.4665 0 0 0 851.3440825377816 851.3440825377816 1.7609125905568135 0 0 0 0 0 0 0 0 H{I|L} 1.4665 - 42 + NaN NaN 104278.3 NaN 1753 1622 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3378 26.852 NaN 46362 35 0 9500.5 0.262 + 28294 TLSNVRVQ 8 19 458.76425164372705 915.5139503542541 2 458.7642822265625 MULTI HCD FTMS 0 0 0 3376 20314.587890625 0.7687531735525829 4 -0.06840324401855469 2 Unmodified _TLSNVRVQ_ REV__DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000198947|P11532-11|DMD;REV__nc|ENSG00000198947|P11532-4|DMD;REV__nc|ENSG00000198947|P11532|DMD 7.910154910731844 0.5302565402355366 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 90281.8 NaN 1754 1622 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3379 26.856 NaN 32433 35 0 5304.2 0.261 -1 0 24 476.1982712911341 475.19099482453413 1 476.1984558105469 MULTI HCD FTMS 0 0 0 3376 17115.728515625 0.4497886059717145 -43 0.579376220703125 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 96209.1 NaN 1755 1622 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3380 26.859 NaN 31625 35 0 4930.8 0.261 -1 MDVSNVEAI 9 21 497.23139240513996 NaN 0 497.23126220703125 PEAK HCD FTMS 0 0 0 3376 5712.16845703125 0.5929900024452525 1 -0.0234222412109375 4 Oxidation (M) _M(Oxidation (M))DVSNVEAI_ ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM 2.9952420565917617 0.2807323172627736 1 A 1 -1 6.9897 0 0 0.70429 0 0 131.0946042184957 787.2926729791624 918.387277197658 0 0 0 0 0 0 0 0 0 A 0.70429 + + 1 + NaN NaN 89912.4 NaN 1756 1622 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3381 26.862 NaN 26618 35 0 5795.2 0.261 + -1 CCMLIYEQ 8 17 530.2174980001425 NaN 0 530.2176513671875 PEAK HCD FTMS 0 0 0 3376 2178.40771484375 0.28456272783495057 -1 0.023468017578125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))CMLIYEQ_ REV__ENSG00000257365|ENST00000246166|FNTB;REV__ENST00000557300.1_1_14:65519909-65528027:+|nuORF;REV__nc|ENSG00000257365|P49356-2|FNTB 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86514 NaN 1757 1622 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3382 26.866 NaN 36320 35 0 10884 0.261 + 2088 DFAFSLYKH 9 22 564.278076171875 NaN 0 564.278076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _DFAFSLYKH_ ENSG00000170099|ENST00000341584|SERPINA6;SERPINA6|p.V44A|1|0.16|ENSG00000170099|chr14:94314518-94314518|A/G|missense_variant 1.844237919475145 0.28630992268396543 1 {M(Oxidation (M))|F} 1 8 2.7642 0 0 0.24559 0 0 828.6000867169938 146.8629549615844 975.4630416785782 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.24559 + + 1 + NaN NaN 79669.9 NaN 1758 1622 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3384 26.871 NaN 27585 35 0 4097.8 0.411 -1 RCIACKLC 8 31 512.2464143386753 NaN 0 512.24658203125 PEAK HCD FTMS 0 0 0 3383 4062.07080078125 0.5509214837379867 -3 0.06688308715820312 1 2 Carbamidomethyl (C) _RCIAC(Carbamidomethyl (C))KLC(Carbamidomethyl (C))_ ENSG00000110717|ENST00000313468|NDUFS8;ENST00000532399.1_1_11:67800486-67800891:+|nuORF 2.302733041254933 0.38822285293237185 1 TWG 3 -1 13.188 0 0 1.2898 0 0 259.11567916387565 416.18894373111567 675.3046228949913 0 0 0 0 0 0 0 0 0 TWG 1.2898 - 8 + NaN NaN 90038.5 NaN 1759 1623 3383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3386 26.879 NaN 1252100 35 0 129200 0.327 + 27690 TANNDHTVL 9 94 492.74077022667655 983.4669875201531 2 492.7408447265625 MULTI HCD FTMS 0 0 0 3385 1038880.3125 0.8856300099485014 -1 0.008312225341796875 1 Unmodified _TANNDHTVL_ ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 139.78183599554657 1.962818552322152E-05 1 [TA]NNDHTV{I|L} 9 0 + 105.71 0 0 10.748 10.748 94.166 0 0 0 10.387503096606139 10.387503096606139 10.387503096606139 9.208187539523749 0 2.7302046884880937 1.6989700043360187 1.2614393726401687 0.9749073637206092 + + [TA]NNDHTV{I|L};[TA]GGNDHTV{I|L};[TA]NGGDHTV{I|L};TANNDHTV{I|L};TANGGDHTV{I|L};TAGGNDHTV{I|L};[TA]GGGGDHTV{I|L};TAGGGGDHTV{I|L};{[QG]|[NA]}TNDHTV{I|L};{NN|[MP]|[D{I|L}]|[EV]}[TA]DHTV{I|L} 10.748;9.812;9.812;9.6921;8.7558;8.7558;7.8889;7.824;7.6186;7.188 +;-;-;+;-;-;-;-;-;- + 814 NaN NaN 291908.4 NaN 1760 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3387 26.884 NaN 139140 35 0 10624 0.261 + 19635 NVEEADAAM 9 56 483.1978389457297 964.3811249582594 2 483.1973571777344 MULTI HCD FTMS 0 0 0 3385 53880.5234375 0.37741316364907546 10 -0.1350421905517578 2 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 88.95385435242217 0.004553379958619559 1 {[NV]|[RG]}E{[CP]|[EA]}DAA{M(Oxidation (M))|F} 9 0 + 52.462 0 0 5.44 5.44 91.689 0 0 0 38.52211747517542 1.5446797436979978 1.5446797436979978 47.48896295595124 0 2.274227503252014 0 0.28872548999643577 0 + + {[NV]|[RG]}E{[CP]|[EA]}DAA{M(Oxidation (M))|F};{[NV]|[RG]}E{[CP]|[EA]}{[CT]|[{M(Oxidation (M))|F}G]}{[CP]|[EA]} 5.44;0.5157 +;- + 107 + NaN NaN 106303.2 NaN 1761 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3388 26.887 NaN 230560 35 0 23925 0.262 + 3366 EEQQALQKKL 10 51 405.5627303218292 1213.6663615656876 3 405.5626220703125 MULTI HCD FTMS 0 0 0 3385 44378.84375 0.4208617004496236 -3 0.055202484130859375 3 Unmodified _EEQQALQKKL_ CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;nc|ENSG00000198467|P07951-2|TPM2 9.38312468134398 0.42334543440173333 1 AQQ[HC] 5 8 26.466 0 0 2.1807 0 0 628.426661467776 0 628.426661467776 0 10.268024924119668 0 0 0 0 0 0 0.4247425010840047 AQQ[HC] 2.1807 - 24 NaN NaN 117064.5 NaN 1762 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3389 26.891 NaN 29775 35 0 3907.6 0.261 + 12126 KKKKKKKKKSF 11 22 469.3283712715613 NaN 0 469.32861328125 PEAK HCD FTMS 0 0 0 3385 13524.3505859375 0.8031235150496043 1 -0.026515960693359375 4 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81793.8 NaN 1763 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3390 26.894 NaN 49757 35 0 5834.3 0.261 + 3269 EEAQVRKENQW 11 28 472.90039492627955 1415.6793553790387 3 472.9004821777344 MULTI HCD FTMS 0 0 0 3385 15543.0859375 0.948736204206358 -4 0.0751953125 5 Unmodified _EEAQVRKENQW_ ENSG00000113558|ENST00000353411|SKP1 1.4551175022131473 0.41253901545122046 1 W 1 10 16.99 0 0 1.2001 0 0 1211.5896927587246 0 1211.5896927587246 0 10 0 0 0 0 0 0 0 + W 1.2001 + + 9 + NaN NaN 87578.6 NaN 1764 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3391 26.897 NaN 23858 35 0 5716.4 0.261 -1 LCSGAQRDSGL 11 15 582.2772321493898 1162.5399113655794 2 582.2772216796875 MULTI HCD FTMS 0 0 0 3385 12325.7958984375 0.9575269742256404 1 -0.026515960693359375 6 Carbamidomethyl (C) _LC(Carbamidomethyl (C))SGAQRDSGL_ ENSG00000135763|ENST00000258243|URB2 6.630372943996041 0.3898421031449734 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}SQ 4 -1 20.445 0 0 1.7587 0 0 0 671.3117769830686 671.3117769830686 20.445312593723983 0 0 0 0 0.4247425010840047 0 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}SQ 1.7587 - 4 + NaN NaN 86994.8 NaN 1765 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3392 26.901 NaN 21978 35 0 4507.2 0.261 + 19554 NSSDINYQTR 10 18 599.2783958256439 1196.5422387180877 2 599.2780151367188 MULTI HCD FTMS 0 0 0 3385 5217.2509765625 0.11169424799183193 -11 0.16316604614257812 7 Unmodified _NSSDINYQTR_ ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12 8.444304893310646 0.4306066564229251 1 [NS]SD{I|L}N 6 4 31.031 0 0 2.5934 0 0 0 563.2598360650999 563.2598360650999 31.030768805449185 0 0 0 0 0.5 0 0 0 + [NS]SD{I|L}N 2.5934 + + 13 + NaN NaN 89175.9 NaN 1766 1624 3385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3394 26.906 NaN 28007 35 0 3233.2 0.327 + -1 SPMLPHGPC 9 24 498.2248381761421 994.4351234190842 2 498.2242126464844 MULTI HCD FTMS 0 0 0 3393 10394.125 0.8528664532333828 -1 0.026515960693359375 1 Carbamidomethyl (C) _SPMLPHGPC(Carbamidomethyl (C))_ REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF 2.302733041254933 0.33356062215410776 1 [PS]S 3 -1 10.458 0 0 1.0516 0 0 0 720.2941378229124 720.2941378229124 10.45757490560675 0 0 0 0 0 0 0 0 [PS]S 1.0516 - 1 + NaN NaN 87567.5 NaN 1767 1625 3393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3395 26.91 NaN 30616 35 0 10219 0.261 + 1755 CLHCHYPK 8 18 500.7293395996094 NaN 0 500.7293395996094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _CLHCHYPK_ REV__ENSG00000115568|ENST00000411696|ZNF142;REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF;REV__nc|ENSG00000115568|P52746|ZNF142 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82831.6 NaN 1768 1625 3393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3397 26.916 NaN 21972 35 0 6559.2 0.327 -1 VMTKCRLEHE 10 15 631.3048217187555 1260.595090504311 2 631.304443359375 MULTI HCD FTMS 0 0 0 3396 9980.4697265625 0.13144787791184032 11 -0.1328258514404297 1 Oxidation (M) _VM(Oxidation (M))TKCRLEHE_ ENSG00000153060|ENST00000283025|TEKT5 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81847.1 NaN 1769 1626 3396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3398 26.92 NaN 21164 35 0 5278.7 0.261 + 31253 VVSRESAPIKE 11 11 607.8403756843142 1213.6661984354282 2 607.8401489257812 MULTI HCD FTMS 0 0 0 3396 12233.005859375 0.8837489598314142 -2 0.03666877746582031 2 Unmodified _VVSRESAPIKE_ ENSG00000214193|ENST00000453908|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;nc|ENSG00000214193|A4FU49-4|SH3D21;nc|ENSG00000214193|A4FU49-5|SH3D21;nc|ENSG00000214193|A4FU49|SH3D21 0 0.41892066650488113 1 S 1 10 6.9897 0 0 0.57592 0 0 240.21552812468445 883.3905733697874 1123.606101494472 0 0 0 0 0 0 0 0 0 + S 0.57592 + + 3 + NaN NaN 85342.6 NaN 1770 1626 3396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3399 26.924 NaN 30483 35 0 11293 0.261 -1 MWKVNLNE 8 19 546.2613020395063 1090.5080511458125 2 546.2608032226562 MULTI HCD FTMS 0 0 0 3396 4467.99853515625 0.788866847708953 -4 0.06840324401855469 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))WKVNLNE_ ENST00000303562.8_1_14:75748843-75748912:+|nuORF 2.302733041254933 0.5385759549224092 1 NE 2 -1 20.969 0 0 1.9229 0 0 829.4155750959 0 829.4155750959 0 20.969100130080562 0 0 0 0 0 0 0 NE 1.9229 + + 1 NaN NaN 85213.4 NaN 1771 1626 3396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3401 26.929 NaN 116120 35 0 8700 0.327 + 19636 NVEEADAAM 9 56 483.1978389457297 964.3811249582594 2 483.197265625 MULTI HCD FTMS 0 0 0 3400 34756.01171875 0.24345302349955067 13 -0.1633129119873047 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 51.629811660486645 0.02929079705179888 1 ADAA{M(Oxidation (M))|F} 5 4 47.92 0 0 4.9689 0 0 471.1958660244688 0 471.1958660244688 0 32.74227503252014 0 0 0 1.9247425010840047 0 0 0 + ADAA{M(Oxidation (M))|F} 4.9689 + + 192 + NaN NaN 91530.8 NaN 1772 1627 3400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3402 26.934 NaN 50798 35 0 7465.7 0.261 -1 QPMQPTPSM 9 27 524.7253800892676 1047.436207245335 2 524.724853515625 MULTI HCD FTMS 0 0 0 3400 17732.376953125 0.14041251225113485 23 -0.3197441101074219 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100061.8 NaN 1773 1627 3400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3404 26.939 NaN 32728 35 0 4283.6 0.327 -1 ALCDTKKSC 9 24 513.2411355144815 1024.4677180957628 2 513.2410278320312 MULTI HCD FTMS 0 0 0 3403 11223.537109375 0.33855818525373726 -7 0.11528778076171875 1 Carbamidomethyl (C) _ALCDTKKSC(Carbamidomethyl (C))_ tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1 1.844237919475145 0.33703635659052655 1 A 1 -1 5.4846 0 0 0.53536 0 0 331.1161688787691 619.2887667291624 950.4049356079315 0 0 0 0 0 0 0 0 0 A 0.53536 + + 3 + NaN NaN 87898.4 NaN 1774 1628 3403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3405 26.944 NaN 74683 35 0 15870 0.262 + 19151 NGNKNECIAKI 11 46 401.8778357069083 NaN 0 401.8781433105469 PEAK HCD FTMS 0 0 0 3403 7384.4677734375 0.10440403134555798 844 -19.846744537353516 2 Unmodified _NGNKNECIAKI_ REV__ENSG00000214274|ENST00000397990|ANG 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95342.2 NaN 1775 1628 3403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3406 26.947 NaN 31289 35 0 4880.8 0.261 -1 MRTERTSF 8 23 543.2557842234844 1084.4970155137687 2 543.7417602539062 MULTI HCD FTMS 0 0 0 3403 4247.10986328125 0.06263920493859082 36 -0.5294933319091797 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RTERTSF_ CON__A2I7N3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101186.6 NaN 1776 1628 3403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3407 26.951 NaN 26105 35 0 10990 0.261 + 26622 SWMIKPDDH 9 14 564.7607696550219 NaN 0 564.7598876953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SWMIKPDDH_ REV__ENSG00000183091|ENST00000397345|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92563.2 NaN 1777 1628 3403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3409 26.956 NaN 116970 35 0 8354.2 0.327 + -1 HPTIHMPLC 9 47 553.2672343400287 1104.5199157468574 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3408 40806.12890625 0.008267440063984022 164 -2.619211196899414 1 Carbamidomethyl (C) _HPTIHMPLC(Carbamidomethyl (C))_ REV__ENST00000556674.1_1_14:76447956-76448028:-|nuORF 7.910154910731844 0.2910521888787154 1 HP 2 -1 20.573 0 0 1.8626 0 0 0 867.3861788385374 867.3861788385374 13.1259189508755 0 0 0 0 0.5 0 0 0 HP 1.8626 + + 22 + NaN NaN 98341.8 NaN 1778 1629 3408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3410 26.961 NaN 64083 35 0 8905.1 0.261 -1 STMSTNGIPR 10 33 540.2610001028769 1078.5074472725537 2 540.260986328125 MULTI HCD FTMS 0 0 0 3408 27421.994140625 0.6060951582531757 10 -0.12639999389648438 2 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 16.149105407346934 0.3600587335443843 1 N{[VA]|[{I|L}G]}[RP] 5 -1 4.973 0 0 0.4611 0 0 523.1940450282162 0 523.1940450282162 0 4.259687322722808 0 0 0 0.5 0 0 0 N{[VA]|[{I|L}G]}[RP] 0.4611 + + 11 + NaN NaN 92440.2 NaN 1779 1629 3408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3411 26.964 NaN 50379 35 0 11083 0.261 -1 QPDEEPMDM 9 31 562.1996406718212 1122.3847284104422 2 562.1998291015625 MULTI HCD FTMS 0 0 0 3408 12746.62890625 0.7236784385701974 -13 0.19304466247558594 3 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91683.1 NaN 1780 1629 3408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3413 26.97 NaN 39773 35 0 5684 0.327 + 25310 SCECEGPMC 9 28 479.64278459418614 957.2710162551723 2 479.6421813964844 MULTI HCD FTMS 0 0 0 3412 5183.90087890625 0.37688251710230297 4 -0.044895172119140625 1 Unmodified _SCECEGPMC_ REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF 0 0.3510170533115441 1 {M(Oxidation (M))|F} 1 -1 1.9897 0 0 0.20785 0 0 494.02115160849104 313.1853426568969 807.206494265388 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.20785 + + 4 + NaN NaN 91099.5 NaN 1781 1630 3412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3414 26.974 NaN 11100 35 0 3589.4 0.261 + 3345 EELYKRPDE 9 10 589.7883027430547 1177.5620525529093 2 589.7879028320312 MULTI HCD FTMS 0 0 0 3412 9977.1171875 0.41085510859628716 -6 0.09014701843261719 2 Unmodified _EELYKRPDE_ ENSG00000175105|ENST00000636215|ZNF654 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81627.8 NaN 1782 1630 3412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3415 26.978 NaN 44966 35 0 7065.4 0.261 -1 MRTERTSF 8 30 543.2557842234844 1084.4970155137687 2 543.2552490234375 MULTI HCD FTMS 0 0 0 3412 8563.23828125 0.06904954192476642 36 -0.5160083770751953 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RTERTSF_ CON__A2I7N3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89991.7 NaN 1783 1630 3412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3417 26.983 NaN 40309 35 0 6381.5 0.327 + 8852 HLSHTTHF 8 20 490.2410279952494 978.4675030572988 2 490.24114990234375 MULTI HCD FTMS 0 0 0 3416 6262.28955078125 0.47369297181118897 1 -0.010143280029296875 1 Unmodified _HLSHTTHF_ nc|ENSG00000179029|Q6UX40-2|TMEM107 2.302733041254933 0.5385759549224092 1 H{M(Oxidation (M))|F} 2 6 19.464 0 0 1.9892 0 0 676.3272572248062 0 676.3272572248062 0 19.463950151760656 0 0 0 0 0 0 0 + H{M(Oxidation (M))|F} 1.9892 + + 1 NaN NaN 88020.8 NaN 1784 1631 3416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3418 26.988 NaN 22947 35 0 2727 0.261 + -1 QMQQMHHQM 9 25 607.7457449898822 1213.4769370465642 2 607.7481079101562 MULTI HCD FTMS 0 0 0 3416 6028.9833984375 0.4128840844237366 8 -0.09950065612792969 2 Oxidation (M) _QMQQMHHQM(Oxidation (M))_ REV__ENSG00000100393|ENST00000263253|EP300 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86521.8 NaN 1785 1631 3416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3420 26.993 NaN 136870 35 0 6834.1 0.411 + 9542 HRDYETATL 9 54 553.2672343400287 1104.5199157468574 2 553.7553100585938 MULTI HCD FTMS 0 0 0 3419 19271.22265625 0.006627914908835839 167 -2.69537353515625 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 13.042465956692817 0.2476723265019929 1 H{M(Oxidation (M))|F}EA[{I|L}T] 6 4 19.135 0 0 1.7324 0 0 388.17442519355626 0 388.17442519355626 0 1.3431156469699381 0 0 0 0.3807196863200844 0 0.8494850021680094 0 H{M(Oxidation (M))|F}EA[{I|L}T] 1.7324 - 78 NaN NaN 128864.4 NaN 1786 1632 3419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3422 27.001 NaN 910410 35 0 101380 0.327 + 27691 TANNDHTVL 9 74 492.74077022667655 983.4669875201531 2 492.7408447265625 MULTI HCD FTMS 0 0 0 3421 735740.5625 0.6272078831856687 8 -0.10471916198730469 1 Unmodified _TANNDHTVL_ ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 87.25819977447905 0.004597812622239197 1 [TA]NNDHTV{I|L} 9 0 + 84.66 0 0 8.6083 8.6083 90.121 0 0 0 5.647868008430393 5.647868008430393 5.647868008430393 5.647868008430393 0 2.242992819099939 1.6989700043360187 0.6203715150305281 0.6694451763165201 + + [TA]NNDHTV{I|L};TANNDHTV{I|L};[TA]GGNDHTV{I|L};TANGGDHTV{I|L};TAGGNDHTV{I|L};[TA]NNDHVT{I|L};[TA]GGNDHVT{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[SA]|[TG]}EHTV{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[SA]|[TG]}EHVT{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[SA]|[TG]}EHKNA 8.6083;8.034;7.672;7.0977;7.0977;6.5009;5.5646;5.4598;3.3525;1.7217 +;+;-;-;-;-;-;-;-;- + 361 NaN NaN 222144 NaN 1787 1633 3421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3423 27.006 NaN 86052 35 0 7912.4 0.261 + 1950 DAIEKAVSR 9 36 494.77447956502704 987.5344061968541 2 495.77728271484375 MULTI HCD FTMS 0 0 0 3421 11891.9638671875 0.58499198512858 -2 0.018207550048828125 2 Unmodified _DAIEKAVSR_ ENSG00000138081|ENST00000403359|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11 7.608950283845883 0.29333554423920943 1 N[KG]EKA 6 6 22.497 0 0 2.2781 0 0 0 357.1891268365844 357.1891268365844 15.506981269092606 0 0 0 0 0.4247425010840047 0 0 0 N[KG]EKA 2.2781 - 15 + NaN NaN 108095.9 NaN 1788 1633 3421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3424 27.009 NaN 12110 35 0 4253 0.261 + 19025 NCPDSLLSLAN 11 12 573.7766658849756 NaN 0 573.7756958007812 PEAK HCD FTMS 0 0 0 3421 5128.693359375 0.5509561142930999 -5 0.06171417236328125 3 Unmodified _NCPDSLLSLAN_ ENST00000471645.5_1_1:214454597-214504559:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82911.4 NaN 1789 1633 3421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3427 27.022 NaN 142690 35 0 13899 0.326 + 3367 EEQQALQKKL 10 38 405.5627303218292 1213.6663615656876 3 405.56268310546875 MULTI HCD FTMS 0 0 0 3426 50593.14453125 0.4797943127690309 8 -0.10796737670898438 1 Unmodified _EEQQALQKKL_ CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;nc|ENSG00000198467|P07951-2|TPM2 9.38312468134398 0.42334543440173333 1 AQQ[HC] 5 8 24.208 0 0 1.9946 0 0 628.4265121224704 0 628.4265121224704 0 11.020599913279623 0 0 0 0 0 0 0.5 AQQ[HC] 1.9946 - 20 NaN NaN 123328.3 NaN 1790 1635 3426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3428 27.026 NaN 53150 35 0 7972.3 0.261 + 19555 NSSDINYQTR 10 32 599.2783958256439 1196.5422387180877 2 599.2783203125 MULTI HCD FTMS 0 0 0 3426 46710.11328125 1 0 0 2 Unmodified _NSSDINYQTR_ ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12 22.774965066868997 0.29808267786580567 1 [NS]SD{I|L}NY 7 3 40.974 0 0 3.4243 0 0 0 400.19516931705317 400.19516931705317 40.97373228030179 0 0 0 0 0.9247425010840047 0 0 0 + [NS]SD{I|L}NY 3.4243 + + 23 + NaN NaN 102645.6 NaN 1791 1635 3426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3429 27.03 NaN 31737 35 0 7906.3 0.261 -1 HMEPLMIAV 9 18 528.7647601239473 NaN 0 528.7640991210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _HMEPLM(Oxidation (M))IAV_ tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84740.6 NaN 1792 1635 3426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3431 27.036 NaN 21567 35 0 4171.3 0.327 -1 LNQCPFITMA 10 14 605.7830749446701 NaN 0 605.7832641601562 PEAK HCD FTMS 0 0 0 3430 11892.4375 0.932040951201209 -3 0.034191131591796875 1 Carbamidomethyl (C),Oxidation (M) _LNQC(Carbamidomethyl (C))PFITM(Oxidation (M))A_ ENST00000521425.5_2_8:71510412-71510478:-|nuORF 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83187.5 NaN 1793 1636 3430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3432 27.04 NaN 33333 35 0 4030.8 0.263 + -1 TVGPECTM 8 25 455.6856479279286 909.3567429226572 2 455.6852111816406 MULTI HCD FTMS 0 0 0 3430 11359.318359375 0.8608594235158631 -10 0.11932182312011719 2 Carbamidomethyl (C),Oxidation (M) _TVGPEC(Carbamidomethyl (C))TM(Oxidation (M))_ REV__C8A|p.Q15E|1|0.15|ENSG00000157131|chr1:56854944-56854944|C/G|missense_variant 8.593279151180031 0.5292430274356741 1 T{M(Oxidation (M))|F} 2 -1 26.454 0 0 2.9091 0 0 643.2631703107437 0 643.2631703107437 0 26.453650195120844 0 0 0 0.8494850021680094 0 0 0 T{M(Oxidation (M))|F} 2.9091 + + 6 NaN NaN 85863.8 NaN 1794 1636 3430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3433 27.043 NaN 43339 35 0 9054.6 0.261 + -1 GATVTPGGGHM 11 27 500.72932719437784 NaN 0 500.7292175292969 PEAK HCD FTMS 0 0 0 3430 6062.45068359375 0.7688741055015818 1 -0.0135040283203125 3 Oxidation (M) _GATVTPGGGHM(Oxidation (M))_ REV__ENSG00000100714|ENST00000652337|MTHFD1;REV__ENST00000556771.5_1_14:64906939-64911458:+|nuORF;REV__MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant 1.3295316138638542 0.3383486451652214 1 V 1 -1 6.9897 0 0 0.69936 0 0 166.0041122971557 731.3517550104124 897.3558673075681 0 0 0 0 0 0 0 0 0 V 0.69936 + + 2 + NaN NaN 93189.8 NaN 1795 1636 3430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3435 27.049 NaN 178640 35 0 24718 0.327 + 3470 EGDVELLPSDH 11 49 404.1910733741573 1209.551390722672 3 404.19097900390625 MULTI HCD FTMS 0 0 0 3434 52823.84765625 1 0 0 1 Unmodified _EGDVELLPSDH_ ENSG00000048028|ENST00000696973|USP28;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2-3|USP28;nc|ENSG00000048028|Q96RU2|USP28 7.0370850670814 0.388058401935362 1 K{[MS]|[{M(Oxidation (M))|F}A]} 3 10 10.458 0 0 0.86458 0 0 845.3771839826187 0 845.3771839826187 0 10.45757490560675 0 0 0 0 0 0 0 K{[MS]|[{M(Oxidation (M))|F}A]} 0.86458 - 12 NaN NaN 112606.7 NaN 1796 1637 3434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3436 27.053 NaN 45030 35 0 4173.4 0.261 + -1 MLMALSTL 8 36 456.23263410969906 910.4507152861981 2 456.2323303222656 MULTI HCD FTMS 0 0 0 3434 14572.40234375 0.32091079142198575 -4 0.047695159912109375 2 2 Oxidation (M) _M(Oxidation (M))LM(Oxidation (M))ALSTL_ REV__ENSG00000063601|ENST00000445323|MTMR1;REV__ENSG00000087053|ENST00000346299|MTMR2;REV__ENSG00000171100|ENST00000370396|MTM1;REV__nc|ENSG00000063601|Q13613-2|MTMR1;REV__nc|ENSG00000063601|Q13613|MTMR1;REV__nc|ENSG00000087053|Q13614-2|MTMR2;REV__nc|ENSG00000171100|Q13496-2|MTM1 5.230669730166228 0.5342319408533849 1 T{I|L} 2 -1 20.969 0 0 2.3032 0 0 678.3110218732437 0 678.3110218732437 0 12.016675202793719 0 0 0 0 0 0 0 T{I|L} 2.3032 + + 4 NaN NaN 93512.3 NaN 1797 1637 3434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3437 27.057 NaN 16793 35 0 5554 0.261 + 12367 KNWWNYHV 8 15 573.7766658849756 NaN 0 573.77783203125 PEAK HCD FTMS 0 0 0 3434 6000.01171875 0.6445585474968643 -1 0.0135040283203125 3 Unmodified _KNWWNYHV_ REV__ENST00000433352.1_1_X:64550801-64551062:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80471.5 NaN 1798 1637 3434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3438 27.06 NaN 31762 35 0 11170 0.261 + 17683 MAKCIQLSY 9 13 528.7647601239473 NaN 0 528.7828369140625 PEAK HCD FTMS 0 0 0 3434 3120.41455078125 0.6620136411538078 3 -0.04375267028808594 4 Unmodified _MAKCIQLSY_ REV__ENSG00000120899|ENST00000346049|PTK2B;REV__ENST00000397497.8_2_8:27288866-27309154:+|nuORF;REV__ENST00000495097.1_1_8:27294989-27295398:+|nuORF;REV__nc|ENSG00000120899|Q14289-2|PTK2B 3.2813086475875832 0.27934607848455584 1 H 1 -1 6.9897 0 0 0.66221 0 0 131.057247534822 784.3748873346311 915.4321348694532 0 0 0 0 0 0 0 0 0 H 0.66221 - 1 + NaN NaN 90996.2 NaN 1799 1637 3434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3440 27.066 NaN 64901 35 0 7886.7 0.327 -1 VPTEENEM 8 31 482.69990077694405 NaN 0 482.6999816894531 PEAK HCD FTMS 0 0 0 3439 32993.03125 0.7338391185328389 10 -0.14646148681640625 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 10.823927491677226 0.38822285293237185 1 ENE 3 -1 17.703 0 0 1.8376 0 0 165.0460117067036 423.18720422916255 588.2332159358662 0 0 0 0 0 0.5 0 0 0 ENE 1.8376 + + 16 + NaN NaN 91900.3 NaN 1800 1638 3439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3441 27.07 NaN 41418 35 0 6179.8 0.261 -1 MPSASMTRL 9 25 513.2411355144815 1024.4677180957628 2 513.2413940429688 MULTI HCD FTMS 0 0 0 3439 19670.65625 0.5933656758872639 3 -0.040233612060546875 2 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 10.799506525563784 0.2670509983294061 1 SASPE 5 -1 42.206 0 0 4.1198 0 0 535.2789173810562 0 535.2789173810562 0 42.2062251842808 0 0 0 0 0 0.4247425010840047 0 SASPE 4.1198 - 10 NaN NaN 84040.5 NaN 1801 1638 3439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3442 27.074 NaN 29900 35 0 4198.1 0.261 + 30930 VRIVPLKI 8 22 469.3295583309937 936.6445637287874 2 469.32861328125 MULTI HCD FTMS 0 0 0 3439 8394.69921875 0.5337884229469536 -1 0.016790390014648438 3 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86410.8 NaN 1802 1638 3439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3443 27.077 NaN 40961 35 0 10407 0.261 -1 0 22 524.7253800892676 1047.436207245335 2 524.7254028320312 MULTI HCD FTMS 0 0 0 3439 10824.1884765625 0.08571053396234504 34 -0.4674854278564453 4 NaN NaN 1 R 1 -1 7.7642 0 0 0.74126 0 0 542.1942771689663 346.10825525455317 888.3025324235196 0 0 0 0 0 0.5 0 0 0 R 0.74126 - 1 + NaN NaN 98534.5 NaN 1803 1638 3439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3445 27.083 NaN 100620 35 0 7219.7 0.327 + -1 CGLPWRCLT 9 46 553.2672343400287 1104.5199157468574 2 553.2672729492188 MULTI HCD FTMS 0 0 0 3444 44950.4140625 0.009107084256062917 174 -2.882732391357422 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GLPWRCLT_ REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF 4.3292370932331545 0.3181982124262546 1 YEK 3 -1 13.21 0 0 1.196 0 0 149.10709160656216 532.2077730768186 681.3148646833808 0 0 0 0 0 0 0 0.4247425010840047 0 YEK 1.196 - 25 + NaN NaN 93207.5 NaN 1804 1639 3444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3446 27.087 NaN 102810 35 0 11118 0.261 + 12994 KYIQRQETI 9 38 589.8300967878218 1177.6456406424436 2 589.830078125 MULTI HCD FTMS 0 0 0 3444 67348.4453125 0.07757272430812114 -9 0.112945556640625 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 21.590151480376914 0.17382222009858564 1 KY{I|L}Q 4 5 36.938 0 0 3.1366 0 0 0 642.3224581354124 642.3224581354124 13.979400086720375 0 0 0 0 0.5 0 0 0 + KY{I|L}Q 3.1366 + + 15 + NaN NaN 94046 NaN 1805 1639 3444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3448 27.093 NaN 56639 35 0 6376 0.327 -1 STMSTNGIPR 10 27 540.2610001028769 1078.5074472725537 2 540.2608032226562 MULTI HCD FTMS 0 0 0 3447 16684.546875 0.3687705214554164 21 -0.35024452209472656 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 5.731851221503515 0.44496410492002586 1 V 1 -1 11.99 0 0 1.1117 0 0 172.11683555555993 804.3189180963499 976.4357536519099 0 0 0 0 0 0.5 0 0 0 V 1.1117 - 8 + NaN NaN 80492.8 NaN 1806 1640 3447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3449 27.097 NaN 38345 35 0 5624.5 0.261 -1 QPDEEPMDM 9 26 562.1996406718212 1122.3847284104422 2 562.1994018554688 MULTI HCD FTMS 0 0 0 3447 15733.68359375 0.8932657928481483 -2 0.0269622802734375 2 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 9.38312468134398 0.279288223203164 1 P 1 -1 6.9897 0 0 0.62275 0 0 183.0497197207922 839.2809542291624 1022.3306739499546 0 0 0 0 0 0 0 0 0 P 0.62275 + + 2 + NaN NaN 87751.8 NaN 1807 1640 3447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3450 27.1 NaN 39322 35 0 10748 0.261 -1 0 25 479.7877970350612 957.5610411369224 2 479.7870178222656 MULTI HCD FTMS 0 0 0 3447 8146.20166015625 0.6349058008976823 -3 0.04375267028808594 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 81441.3 NaN 1808 1640 3447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3452 27.106 NaN 31788 35 0 5361.6 0.327 + -1 TLTLMDTEF 9 23 543.7570663506776 NaN 0 543.7417602539062 PEAK HCD FTMS 0 0 0 3451 1482.078125 0.3182617786005292 -1 0.013271331787109375 1 Oxidation (M) _TLTLM(Oxidation (M))DTEF_ REV__ENSG00000130957|ENST00000375337|FBP2 3.944395688203298 0.27613285122220627 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89938.5 NaN 1809 1641 3451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3454 27.113 NaN 104310 35 0 11514 0.327 + 1951 DAIEKAVSR 9 34 494.77447956502704 987.5344061968541 2 494.7745056152344 MULTI HCD FTMS 0 0 0 3453 55498.53125 0.4784865952177825 5 -0.06871795654296875 1 Unmodified _DAIEKAVSR_ ENSG00000138081|ENST00000403359|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11 42.835182525472874 0.05232970119408505 1 DA{I|L}EKAVSR 9 0 + 102.27 0 0 10.356 10.356 99.628 0 0 0 95.28327826237401 12.98332479720628 12.98332479720628 102.2729783057342 0 1.6861818737241734 1.5228787452803376 0.3807196863200844 0 + + DA{I|L}EKAVSR 10.356 + + 51 + NaN NaN 92556 NaN 1810 1642 3453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3455 27.118 NaN 64538 35 0 6842 0.261 -1 GWAVRWLC 8 33 524.2644908256149 1046.5144287180296 2 524.2821044921875 MULTI HCD FTMS 0 0 0 3453 6513.95703125 0.5583510764570986 2 -0.037647247314453125 2 Carbamidomethyl (C) _GWAVRWLC(Carbamidomethyl (C))_ ENST00000563748.5_1_15:34653640-34654429:-|nuORF 2.577480529830294 0.5381683276125971 1 Q 1 -1 5.4846 0 0 0.52408 0 0 113.04379991119215 802.3938082330686 915.4376081442608 0 0 0 0 0 0 0 0 0 Q 0.52408 - 4 + NaN NaN 88939.2 NaN 1811 1642 3453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3456 27.121 NaN 20929 35 0 6330.7 0.261 + -1 FQKELYRCF 9 22 645.8177564527607 NaN 0 645.8170166015625 PEAK HCD FTMS 0 0 0 3453 5317.35302734375 0.837253016664888 1 -0.016582489013671875 3 Carbamidomethyl (C) _FQKELYRC(Carbamidomethyl (C))F_ REV__ENSG00000169299|ENST00000381967|PGM2;REV__PGM2|p.A349Pfs*41|1|0.27|ENSG00000169299|chr4:37846964-37846964|G/-|frameshift_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80603 NaN 1812 1642 3453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3457 27.125 NaN 15054 35 0 3052.5 0.261 + -1 YERCKYPKE 9 17 636.8074629390153 1271.6003729448305 2 636.8070068359375 MULTI HCD FTMS 0 0 0 3453 4947.15771484375 1 0 0 4 Carbamidomethyl (C) _YERC(Carbamidomethyl (C))KYPKE_ REV__ENSG00000149050|ENST00000278314|ZNF214 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86057.4 NaN 1813 1642 3453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3459 27.13 NaN 271380 35 0 29465 0.327 + 27692 TANNDHTVL 9 61 492.74077022667655 983.4669875201531 2 492.7408142089844 MULTI HCD FTMS 0 0 0 3458 209828.96875 0.17887607402469308 18 -0.31276702880859375 1 Unmodified _TANNDHTVL_ ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 55.50274090549119 0.023872834264864425 1 TV{I|L} 3 6 38.288 0 0 3.8932 0 0 652.2521839826187 0 652.2521839826187 0 0.8412188239621088 0 0 0 0.805462187404089 0 0.6421590589602533 0 + TV{I|L} 3.8932 + + 34 NaN NaN 122158.8 NaN 1814 1643 3458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3460 27.135 NaN 53626 35 0 7859.5 0.261 + 3595 EKITDRNL 8 26 494.77447956502704 987.5344061968541 2 495.7770080566406 MULTI HCD FTMS 0 0 0 3458 6329.50927734375 0.31136255023946613 8 -0.13244247436523438 2 Unmodified _EKITDRNL_ ENSG00000206560|ENST00000683139|ANKRD28;ENST00000479043.1_1_3:15718479-15719091:-|nuORF;nc|ENSG00000206560|O15084-1|ANKRD28;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28 2.0597508629832335 0.5389364538378849 1 N[{I|L}A]E 4 7 11.682 0 0 1.183 0 0 0 557.3218477838499 557.3218477838499 4.69273760456403 0 0 0 0 0 0 0 0 N[{I|L}A]E 1.183 - 7 + NaN NaN 94821.8 NaN 1815 1643 3458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3461 27.139 NaN 40942 35 0 6471.9 0.261 + 23307 RILIALYL 8 28 487.8226122624066 NaN 0 487.7426452636719 PEAK HCD FTMS 0 0 0 3458 7718.41015625 1 0 0 3 Unmodified _RILIALYL_ REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81574.5 NaN 1816 1643 3458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3462 27.142 NaN 24587 35 0 6262 0.261 + 3738 ENATGDLATSR 11 19 567.7726476601237 1133.5307423870472 2 567.7735595703125 MULTI HCD FTMS 0 0 0 3458 7759.0693359375 0.8282859926000089 -4 0.04763221740722656 4 Unmodified _ENATGDLATSR_ ENSG00000167642|ENST00000301244|SPINT2;ENST00000590210.1_1_19:38755508-38778604:+|nuORF;nc|ENSG00000167642|O43291-2|SPINT2 3.5870582119611467 0.4031890477297048 1 AT{[QD]|[EN]|[WG]|[KD]|[RS]} 4 7 14.693 0 0 1.2962 0 0 700.3032471251316 0 700.3032471251316 0 14.69273760456403 0 0 0 0 0 0 0 + AT{[QD]|[EN]|[WG]|[KD]|[RS]} 1.2962 + + 9 + NaN NaN 91625.2 NaN 1817 1643 3458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3463 27.146 NaN 11980 35 0 3383.6 0.261 + -1 QCLIYHFC 8 12 570.7526729927777 NaN 0 570.752685546875 PEAK HCD FTMS 0 0 0 3458 1766.4898681640625 0.27054034315927494 -3 0.03747749328613281 5 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))LIYHFC(Carbamidomethyl (C))_ REV__ENSG00000121446|ENST00000294854|RGSL1;REV__nc|ENSG00000121446|A5PLK6-6|RGSL1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82845.3 NaN 1818 1643 3458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3465 27.151 NaN 38996 35 0 8113.1 0.327 -1 ETPYKCEECC 10 28 459.172074780611 NaN 0 459.1720886230469 PEAK HCD FTMS 0 0 0 3464 20547.470703125 0.5155935068859633 -23 0.3269920349121094 1 3 Carbamidomethyl (C) _ETPYKC(Carbamidomethyl (C))EEC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ZNF208|p.G459C|1|0.22|ENSG00000160321|chr19:21973659-21973659|C/A|missense_variant 0.15932191953741626 0.34004793154798674 1 C(Carbamidomethyl (C)) 1 -1 1.9897 0 0 0.21714 0 0 280.40742973524704 472.8741549127563 753.2815846480033 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.21714 + + 1 + NaN NaN 91625.5 NaN 1819 1644 3464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3466 27.156 NaN 31144 35 0 8575 0.261 + -1 YERMKMVMQ 9 15 616.2861095799897 1230.5576662267792 2 616.2855224609375 MULTI HCD FTMS 0 0 0 3464 4207.35791015625 0.4034308530785761 -4 0.05854225158691406 2 Oxidation (M) _YERM(Oxidation (M))KMVMQ_ REV__ENSG00000117593|ENST00000649689|DARS2 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83820 NaN 1820 1644 3464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3467 27.159 NaN 32270 35 0 9926.3 0.261 + 35072 YTTKDGCALR 10 24 564.2792410517769 1126.5439291703537 2 564.78076171875 MULTI HCD FTMS 0 0 0 3464 1563.57080078125 0.3492022485437334 -1 0.02106475830078125 3 Unmodified _YTTKDGCALR_ REV__ENSG00000198104|ENST00000641644|OR2T6 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102026.8 NaN 1821 1644 3464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3470 27.172 NaN 57755 35 0 7694.3 0.327 + 9646 HVAQGDATL 9 26 456.23263410969906 910.4507152861981 2 456.2323303222656 MULTI HCD FTMS 0 0 0 3469 33594.05078125 0.739802070308955 5 -0.09023666381835938 1 Unmodified _HVAQGDATL_ ENSG00000038219|ENST00000040738|BOD1L1 17.11289562659939 0.2125047172822487 1 AT{I|L} 3 6 33.94 0 0 3.7278 0 0 607.271776267775 0 607.271776267775 0 12.971062485323515 0 0 0 0.5 0 0.4247425010840047 0 + AT{I|L} 3.7278 + + 15 NaN NaN 85640.8 NaN 1822 1646 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3471 27.177 NaN 101880 35 0 14709 0.261 -1 LWPRACWTL 9 44 401.5425262835222 1201.6057494507666 3 401.87738037109375 MULTI HCD FTMS 0 0 0 3469 6826.41162109375 0.5606937712077578 -6 0.07968330383300781 2 Carbamidomethyl (C) _LWPRAC(Carbamidomethyl (C))WTL_ ENSG00000076662|ENST00000160262|ICAM3;ENST00000587992.1_1_19:10446311-10450332:-|nuORF;ENST00000589261.5_2_19:10449898-10450290:-|nuORF;ENST00000589580.1_1_19:10449837-10450290:-|nuORF 0.9622753412299311 0.3437222896773173 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93351.2 NaN 1823 1646 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3473 27.182 NaN 59718 35 0 6863.7 0.327 + 12440 KQAPRYPS 8 29 473.75912779195653 945.5037026507131 2 473.75872802734375 MULTI HCD FTMS 0 0 0 3472 29845.75390625 0.8072065818839719 -2 0.017633438110351562 1 Unmodified _KQAPRYPS_ ENSG00000146966|ENST00000496613|DENND2A;nc|ENSG00000146966|Q9ULE3-2|DENND2A 2.0597508629832335 0.5389364538378849 1 KY 2 6 20.969 0 0 2.2178 0 0 0 651.3206881158811 651.3206881158811 17.870156338638594 0 0 0 0 0 0 0 0 KY 2.2178 - 4 + NaN NaN 93593.4 NaN 1824 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3474 27.187 NaN 49920 35 0 6471.8 0.261 + 3640 ELGEERLGS 9 28 495.2483546925406 988.4821564518812 2 495.2486267089844 MULTI HCD FTMS 0 0 0 3472 9968.6826171875 0.2959293723599402 7 -0.12465476989746094 2 Unmodified _ELGEERLGS_ REV__ENSG00000180336|ENST00000409122|MEIOC;REV__nc|ENSG00000180336|A2RUB1-5|MEIOC 3.5964929083625545 0.32375295897743744 1 EK 2 -1 10.969 0 0 1.1097 0 0 300.0949016684812 428.22663294010005 728.3215346085813 0 0 0 0 0 0 0 0 0 EK 1.1097 - 6 + NaN NaN 89596.2 NaN 1825 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3475 27.19 NaN 38537 35 0 5143.5 0.261 -1 MAEERAESL 9 32 526.2397456246207 1050.4649383160413 2 526.2398071289062 MULTI HCD FTMS 0 0 0 3472 21316.1875 0.7110227640371758 -2 0.017633438110351562 3 Oxidation (M) _M(Oxidation (M))AEERAESL_ ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74595806-74598423:-|nuORF;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1 5.296884461304476 0.3108627248283497 1 S{I|L} 2 -1 25.969 0 0 2.4722 0 0 832.3377552716812 0 832.3377552716812 0 18.979400086720375 0 0 0 0.5 0 0 0 S{I|L} 2.4722 + + 7 NaN NaN 93428.5 NaN 1826 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3476 27.193 NaN 114850 35 0 13292 0.263 + 26497 SVFFLSCSLSL 11 38 401.5425262835222 1201.6057494507666 3 401.54156494140625 MULTI HCD FTMS 0 0 0 3472 1666.4019775390625 0.15817292607222821 1 -0.029886245727539062 4 Unmodified _SVFFLSCSLSL_ REV__ENST00000366481.3_1_1:248040148-248040412:+|nuORF 1.1933415558491238 0.4136870758253112 1 V 1 -1 1.1092 0 0 0.092313 0 0 879.4537851947103 220.0680330865844 1099.5218182812948 0 0 0 0 0 0 0 0 0 V 0.092313 + + 5 + NaN NaN 105999 NaN 1827 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3477 27.197 NaN 30143 35 0 7423.1 0.261 + 13953 KYRKKEEET 9 15 605.8249753577753 1209.6353977823505 2 605.8256225585938 MULTI HCD FTMS 0 0 0 3472 12486.376953125 0.7552605171948981 -3 0.031070709228515625 5 Unmodified _KYRKKEEET_ REV__ENSG00000076513|ENST00000261739|ANKRD13A 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85170.2 NaN 1828 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3478 27.2 NaN 20177 35 0 4687.1 0.261 + -1 LFYDELCPV 9 22 599.2783958256439 1196.5422387180877 2 599.2779541015625 MULTI HCD FTMS 0 0 0 3472 6450.7646484375 0.1381020981387111 12 -0.2153148651123047 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LFYDELC(Carbamidomethyl (C))PV_ REV__ENST00000394440.7_1_2:62095730-62095817:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97084.4 NaN 1829 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3479 27.203 NaN 20477 35 0 4379.4 0.261 + -1 PPPAAWCAAPP 11 16 567.7726476601237 1133.5307423870472 2 567.7715454101562 MULTI HCD FTMS 0 0 0 3472 9367.62109375 1 0 0 7 Carbamidomethyl (C) _PPPAAWC(Carbamidomethyl (C))AAPP_ REV__GATA3|p.T215Pfs*50|1|0.32|ENSG00000107485|chr10:8058705-8058705|G/-|frameshift_variant 1.4819007175156935 0.4124215533673021 1 A 1 -1 5.4846 0 0 0.48385 0 0 700.3017822813816 359.1680086725219 1059.4697909539036 0 0 0 0 0 0 0 0 0 A 0.48385 + + 1 + NaN NaN 86306.1 NaN 1830 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3480 27.207 NaN 29530 35 0 11188 0.261 + 782 ASSRATYGLMA 11 18 564.2792410517769 1126.5439291703537 2 564.78125 MULTI HCD FTMS 0 0 0 3472 1369.62890625 0.3058879671416345 2 -0.04337882995605469 8 Unmodified _ASSRATYGLMA_ ENST00000558532.1_1_15:64067831-64126084:-|nuORF 1.3295316138638542 0.4130897924953357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88242.8 NaN 1831 1647 3472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3482 27.212 NaN 41744 35 0 4645.8 0.327 -1 VPTEENEM 8 24 482.69990077694405 NaN 0 482.7000427246094 PEAK HCD FTMS 0 0 0 3481 18810.9765625 0.41839836887878834 20 -0.289947509765625 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 7.289230182591677 0.38822285293237185 1 EN 2 -1 15.969 0 0 1.6576 0 0 165.04640533058722 552.2316804344141 717.2780857650014 0 0 0 0 0 0.5 0 0 0 EN 1.6576 + + 5 + NaN NaN 83684.4 NaN 1832 1648 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3483 27.217 NaN 110870 35 0 13640 0.261 -1 KRMMKTWTL 9 41 404.21911616757643 1209.6355191029293 3 404.2189636230469 MULTI HCD FTMS 0 0 0 3481 31641.56640625 0.9567483477093291 -2 0.03981590270996094 2 Oxidation (M) _KRM(Oxidation (M))MKTWTL_ ENSG00000113441|ENST00000231368|LNPEP;ENST00000473914.1_1_5:96332105-96341995:+|nuORF;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;nc|ENSG00000113441|Q9UIQ6-3|LNPEP 7.608950283845883 0.29333554423920943 1 T{I|L} 2 -1 24.464 0 0 2.0224 0 0 977.4934730597637 0 977.4934730597637 0 20.48455006504028 0 0 0 0.5 0 0 0 T{I|L} 2.0224 + + 8 + NaN NaN 99666.6 NaN 1833 1648 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3484 27.22 NaN 31010 35 0 10280 0.261 + 35311 YWLLCFVL 8 20 528.7829233152391 1055.5512936972782 2 528.7828979492188 MULTI HCD FTMS 0 0 0 3481 5187.9169921875 0.36194701486186787 6 -0.09476852416992188 3 Unmodified _YWLLCFVL_ ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83061.3 NaN 1834 1648 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3486 27.226 NaN 943060 35 0 103810 0.327 + 12995 KYIQRQETI 9 88 589.8300967878218 1177.6456406424436 2 589.8302001953125 MULTI HCD FTMS 0 0 0 3485 828071.875 0.9537828374304234 1 -0.023439407348632812 1 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 137.42381684818497 0.00015474832393368816 1 [Y{I|L}]QRKQET{I|L} 9 2 + 51.099 0 0 4.3391 4.3391 85.211 0 0 0 4.240626165355096 12.28984291720431 4.240626165355096 9.208187539523749 0 0.3807196863200844 1.2218487496163564 0.3494850021680094 1.2951140161145327 [Y{I|L}]QRKQET{I|L};[Y{I|L}][AG]RKQET{I|L};[Y{I|L}]QRK[AG]ET{I|L};[Y{I|L}]QRKQTE{I|L};[Q{I|L}]YRKQET{I|L};[{M(Oxidation (M))|F}V]{[SA]|[TG]}RKQET{I|L};[Y{I|L}][AG]RK[AG]ET{I|L};[Y{I|L}]QRK[AG]TE{I|L};[Y{I|L}][AG]RKQTE{I|L};[Q{I|L}]YRK[AG]ET{I|L} 4.3391;3.5572;3.5572;3.3442;3.2523;3.2373;2.779;2.5622;2.5622;2.4704 -;-;-;-;-;-;-;-;-;- 3388 NaN NaN 230857.2 NaN 1835 1649 3485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3487 27.23 NaN 102440 35 0 8602.5 0.261 + 9543 HRDYETATL 9 43 553.2672343400287 1104.5199157468574 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3485 34596.49609375 0.00700935044674446 184 -3.171754837036133 2 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 13.042465956692817 0.2476723265019929 1 H{I|L}A 3 7 23.188 0 0 2.0993 0 0 0 780.3066500299436 780.3066500299436 6.63303128443836 0 0 0 0 0 0 0 0 H{I|L}A 2.0993 - 38 + NaN NaN 109203.8 NaN 1836 1649 3485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3488 27.234 NaN 35453 35 0 5390.2 0.261 + 30931 VRIVPLKI 8 26 469.3295583309937 936.6445637287874 2 469.32843017578125 MULTI HCD FTMS 0 0 0 3485 10022.5146484375 0.6372952917959118 10 -0.17193603515625 3 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 79244.8 NaN 1837 1649 3485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3489 27.237 NaN 31232 35 0 4852.2 0.261 -1 QPDEEPMDM 9 17 562.1996406718212 1122.3847284104422 2 562.1995849609375 MULTI HCD FTMS 0 0 0 3485 7419.275390625 0.4212227146094407 7 -0.11158180236816406 4 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 7.289230182591677 0.29575926068275815 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79076.6 NaN 1838 1649 3485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3490 27.24 NaN 45138 35 0 9360.3 0.261 + 29306 TYNIEQRT 8 31 512.7567612536513 1023.4989695741027 2 512.7567138671875 MULTI HCD FTMS 0 0 0 3485 9314.01953125 0.6450827801210294 -4 0.06101226806640625 5 Unmodified _TYNIEQRT_ REV__ENSG00000150672|ENST00000376104|DLG2;REV__nc|ENSG00000150672|Q15700-3|DLG2;REV__nc|ENSG00000150672|Q15700-4|DLG2;REV__nc|ENSG00000150672|Q15700-5|DLG2;REV__nc|ENSG00000150672|Q15700|DLG2 8.745405648335112 0.5290173259557154 1 {I|L}N[{M(Oxidation (M))|F}V] 4 -1 24.693 0 0 2.4126 0 0 532.2610983356245 0 532.2610983356245 0 21.593793813122062 0 0 0 1 0 0 0 {I|L}N[{M(Oxidation (M))|F}V] 2.4126 - 21 + NaN NaN 86854.9 NaN 1839 1649 3485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3491 27.244 NaN 19240 35 0 3455 0.261 -1 CVNCRNCR 8 17 569.7382530508345 NaN 0 569.737548828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))VNC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))R_ ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80740.4 NaN 1840 1649 3485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3493 27.249 NaN 28174 35 0 5444.9 0.327 + 7111 FRPGVRAR 8 15 479.7877970350612 957.5610411369224 2 479.7873840332031 MULTI HCD FTMS 0 0 0 3492 8577.09375 0.6684890460487083 7 -0.10493659973144531 1 Unmodified _FRPGVRAR_ REV__ENST00000566021.1_1_16:14704654-14724033:-|nuORF 0.6903765706972694 0.5409681170271811 1 {I|L} 1 -1 3.9794 0 0 0.41558 0 0 460.60853977149117 380.84397302799067 841.4525127994818 0 0 0 0 0 0 0 0 0 {I|L} 0.41558 - 2 + NaN NaN 76403.5 NaN 1841 1650 3492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3494 27.254 NaN 36925 35 0 4937 0.261 + 20803 PHIEERSVQ 9 23 547.7830628302789 1093.5515727273578 2 547.7825927734375 MULTI HCD FTMS 0 0 0 3492 13006.69921875 0.4427873147730614 -6 0.09788894653320312 2 Unmodified _PHIEERSVQ_ REV__ENSG00000148143|ENST00000277225|ZNF462;REV__nc|ENSG00000148143|Q96JM2-2|ZNF462;REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 3.5964929083625545 0.32375295897743744 1 {I|L}{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.4135 0 0 746.356374526341 0 746.356374526341 0 11.478174818886375 0 0 0 0.5 0 0 0 {I|L}{[ES]|[DT]|[{I|L}C]} 1.4135 - 5 NaN NaN 88523.2 NaN 1842 1650 3492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3495 27.257 NaN 18302 35 0 3553.4 0.261 + -1 IMELFLKQY 9 16 600.8211778786647 1199.6278028241293 2 600.8208618164062 MULTI HCD FTMS 0 0 0 3492 6068.98681640625 0.7782690401042628 1 -0.01348876953125 3 Oxidation (M) _IM(Oxidation (M))ELFLKQY_ REV__ENSG00000164761|ENST00000297350|TNFRSF11B 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86745.1 NaN 1843 1650 3492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3497 27.263 NaN 188670 35 0 19993 0.327 + 23679 RQIQEFLN 8 49 524.2826868151926 1046.5508206971851 2 524.282470703125 MULTI HCD FTMS 0 0 0 3496 116350.5625 0.7389024755455065 2 -0.0278167724609375 1 Unmodified _RQIQEFLN_ REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF 7.289230182591677 0.5311777711368266 1 KY{I|L}H 4 -1 24.157 0 0 2.3082 0 0 0 502.2401217096313 502.2401217096313 4.69273760456403 0 0 0 0 0 0 0 0 KY{I|L}H 2.3082 - 260 + NaN NaN 108432.4 NaN 1844 1651 3496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3498 27.267 NaN 115690 35 0 10918 0.261 + 27705 TANQHSDVI 9 44 492.74077022667655 983.4669875201531 2 492.74072265625 MULTI HCD FTMS 0 0 0 3496 78645.3515625 0.06704399212175874 26 -0.3161811828613281 2 Unmodified _TANQHSDVI_ ENSG00000128513|ENST00000357628|POT1;nc|ENSG00000128513|Q9NUX5-2|POT1 21.536976647645854 0.1742816388551942 1 [TA]N 3 6 27.932 0 0 2.8401 0 0 0 694.3219088190061 694.3219088190061 8.46787486224656 0 0 0 0 0.5 1.6989700043360187 0 0 + [TA]N 2.8401 + + 28 + NaN NaN 102739 NaN 1845 1651 3496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3499 27.271 NaN 32556 35 0 3773.5 0.261 + -1 EYSKLRGM 8 23 500.25006242056077 998.4855719079216 2 500.25042724609375 MULTI HCD FTMS 0 0 0 3496 4753.58984375 0.2790413500538457 5 -0.07465362548828125 3 Oxidation (M) _EYSKLRGM(Oxidation (M))_ REV__ENSG00000127948|ENST00000461988|POR;REV__ENST00000412064.6_1_7:75609789-75615495:+|nuORF;REV__POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant 5.230669730166228 0.5342319408533849 1 V{M(Oxidation (M))|F} 2 -1 21.198 0 0 2.123 0 0 734.371357896006 0 734.371357896006 0 15.713337517843655 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.123 - 5 + NaN NaN 91328.7 NaN 1846 1651 3496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3500 27.274 NaN 37223 35 0 5319.3 0.261 -1 TAVKNDYEM 9 31 543.7424043697986 1085.470255806397 2 543.742431640625 MULTI HCD FTMS 0 0 0 3496 9099.3740234375 0.6417299000699186 7 -0.11488151550292969 4 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 2.9952420565917617 0.3283108881486655 1 V[PG] 3 -1 5.9421 0 0 0.54742 0 0 814.3166371076187 0 814.3166371076187 0 4.348331157524969 0 0 0 0 0 0 0 V[PG] 0.54742 - 3 NaN NaN 88848.6 NaN 1847 1651 3496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3501 27.277 NaN 29769 35 0 9441.5 0.261 + -1 PGKTFRCQ 8 20 497.24940417614573 NaN 0 497.2489929199219 PEAK HCD FTMS 0 0 0 3496 5772.69921875 0.8576264010934684 1 -0.020074844360351562 5 Carbamidomethyl (C) _PGKTFRC(Carbamidomethyl (C))Q_ REV__ENST00000303538.12_1_4:39850474-39850534:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85320.3 NaN 1848 1651 3496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3504 27.29 NaN 110210 35 0 18357 0.327 + -1 PHCLTLAGM 9 46 508.23667851129386 NaN 0 508.24566650390625 PEAK HCD FTMS 0 0 0 3503 2107.912353515625 1 0 0 1 Carbamidomethyl (C),Oxidation (M) _PHC(Carbamidomethyl (C))LTLAGM(Oxidation (M))_ REV__ENST00000528927.5_1_11:418373-431830:-|nuORF;REV__ENST00000532094.5_1_11:420655-431830:-|nuORF 11.640296217721598 0.23883959125015683 1 PA 2 -1 9.464 0 0 0.93291 0 0 137.04073733806212 706.3061007135374 843.3468380515994 0 0 0 0 0 0 0 0 0 PA 0.93291 - 7 + NaN NaN 101088 NaN 1849 1653 3503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3505 27.295 NaN 70685 35 0 10326 0.261 + 29307 TYNIEQRT 8 29 512.7567612536513 1023.4989695741027 2 513.2415161132812 MULTI HCD FTMS 0 0 0 3503 1945.832275390625 0.24743583630034213 3 -0.04683685302734375 2 Unmodified _TYNIEQRT_ REV__ENSG00000150672|ENST00000376104|DLG2;REV__nc|ENSG00000150672|Q15700-3|DLG2;REV__nc|ENSG00000150672|Q15700-4|DLG2;REV__nc|ENSG00000150672|Q15700-5|DLG2;REV__nc|ENSG00000150672|Q15700|DLG2 8.745405648335112 0.5290173259557154 1 KAS[QP] 5 -1 21.254 0 0 2.0766 0 0 494.22398574043126 0 494.22398574043126 0 -2.685690803236298 -2.685690803236298 0 0 0 0 0.3807196863200844 0 KAS[QP] 2.0766 - 41 NaN NaN 87889.9 NaN 1850 1653 3503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3506 27.298 NaN 43824 35 0 6785 0.261 -1 MGLRCPLA 8 26 488.24312609729304 NaN 0 488.2427062988281 PEAK HCD FTMS 0 0 0 3503 7318.87158203125 0.45500443133829815 16 -0.2209148406982422 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GLRC(Carbamidomethyl (C))PLA_ ENST00000534305.1_1_11:65429156-65429584:-|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85083.6 NaN 1851 1653 3503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3507 27.302 NaN 25253 35 0 8327.6 0.261 + 2296 DLSVKDEMHTG 11 12 616.2861095799897 1230.5576662267792 2 616.7891845703125 MULTI HCD FTMS 0 0 0 3503 4098.0478515625 0.43981917990155533 5 -0.08706474304199219 4 Unmodified _DLSVKDEMHTG_ REV__ENSG00000163534|ENST00000368176|FCRL1;REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF;REV__nc|ENSG00000163534|Q96LA6-2|FCRL1 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94396.6 NaN 1852 1653 3503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3509 27.307 NaN 51332 35 0 7267.7 0.327 + 14049 KYVHGNKT 8 36 473.75912779195653 945.5037026507131 2 473.75848388671875 MULTI HCD FTMS 0 0 0 3508 20376.958984375 0.5511140868692471 5 -0.09066009521484375 1 Unmodified _KYVHGNKT_ REV__ENSG00000149136|ENST00000278412|SSRP1;REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF 1.844237919475145 0.5392561982033289 1 KY{I|L}D 4 -1 27.167 0 0 2.8733 0 0 0 423.20502649478755 423.20502649478755 24.69273760456403 0 0 0 0 0 0 0 0 KY{I|L}D 2.8733 - 8 + NaN NaN 84675.7 NaN 1853 1654 3508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3510 27.311 NaN 23104 35 0 5172.9 0.261 + 25853 SMCLPQLCSHI 11 17 616.2861095799897 1230.5576662267792 2 616.2857055664062 MULTI HCD FTMS 0 0 0 3508 5154.7080078125 0.4942693950383543 6 -0.11297798156738281 2 Unmodified _SMCLPQLCSHI_ ENST00000375807.7_1_9:91934628-91940356:+|nuORF;nc|ENSG00000187742|Q96T21-2|SECISBP2 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76983 NaN 1854 1654 3508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3511 27.315 NaN 28534 35 0 10745 0.261 + 12017 KHCGRPQGPL 10 19 546.7915649414062 NaN 0 546.7915649414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KHCGRPQGPL_ nc|ENSG00000116678|P48357-3|LEPR;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|43|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|45|3|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|11|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|15|1|sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|26|2|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88198.1 NaN 1855 1654 3508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3513 27.321 NaN 26875 35 0 4477.7 0.327 + 776 ASRTGSGYL 9 25 456.23263410969906 910.4507152861981 2 456.2322082519531 MULTI HCD FTMS 0 0 0 3512 6919.279296875 0.15237510898004145 14 -0.19091224670410156 1 Unmodified _ASRTGSGYL_ ENST00000373616.9_1_6:36935975-36936125:-|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92766.4 NaN 1856 1655 3512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3514 27.325 NaN 23358 35 0 6226.7 0.261 + 33660 YKFNIRKNQ 9 13 605.8387804430096 NaN 0 605.8252563476562 PEAK HCD FTMS 0 0 0 3512 1935.6566162109375 1 0 0 2 Unmodified _YKFNIRKNQ_ REV__tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80458.1 NaN 1857 1655 3512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3515 27.328 NaN 37786 35 0 4139.8 0.263 + 18075 MMLHKPIT 8 30 485.76418470618944 969.5138164791789 2 485.763427734375 MULTI HCD FTMS 0 0 0 3512 6595.4892578125 0.004005286195601207 -13 0.20684432983398438 3 Unmodified _MMLHKPIT_ ENSG00000069869|ENST00000435532|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934|NEDD4 12.531546534597751 0.5015908124873912 1 EAQ[KP][{I|L}T] 7 4 18.741 0 0 1.933 0 0 184.09036784812264 0 184.09036784812264 0 16.26628182818699 0 0 0 1.3935078169319297 0 0.3054621874040891 0 EAQ[KP][{I|L}T] 1.933 - 11 + NaN NaN 88605.9 NaN 1858 1655 3512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3516 27.332 NaN 20165 35 0 2800.2 0.261 + 29843 VETGVNFHYV 10 22 582.7857762222915 NaN 0 582.785400390625 PEAK HCD FTMS 0 0 0 3512 4811.63037109375 0.37042254145866105 -5 0.07130813598632812 4 Unmodified _VETGVNFHYV_ REV__ENSG00000183690|ENST00000420999|EFHC2 1.6526216038709556 0.33876987398426067 1 P 1 -1 5.4846 0 0 0.47136 0 0 598.4950010756392 464.9975985162719 1063.4925995919111 0 0 0 0 0 0 0 0 0 P 0.47136 - 2 + NaN NaN 84910.1 NaN 1859 1655 3512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3518 27.337 NaN 41185 35 0 5729.6 0.327 + 8240 GSSGSTTFNM 10 37 494.70584507985507 987.3971372265102 2 494.70562744140625 MULTI HCD FTMS 0 0 0 3517 11989.208984375 0.6467093228609226 1 -0.016794204711914062 1 Unmodified _GSSGSTTFNM_ REV__ENSG00000185591|ENST00000327443|SP1;REV__nc|ENSG00000185591|P08047-2|SP1;REV__nc|ENSG00000185591|P08047-3|SP1 8.745405648335112 0.42901288225909884 1 M 1 -1 19.604 0 0 1.9854 0 0 838.3462166716258 0 838.3462166716258 0 12.614393726401687 0 0 0 0.5 0 0 0 M 1.9854 + + 2 + NaN NaN 84058.3 NaN 1860 1656 3517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3519 27.342 NaN 43709 35 0 5086.4 0.261 + -1 GDEPGTLEM 9 23 482.69990077694405 NaN 0 482.6999206542969 PEAK HCD FTMS 0 0 0 3517 17569.42578125 0.3907834909361544 28 -0.31473541259765625 2 Oxidation (M) _GDEPGTLEM(Oxidation (M))_ REV__ENSG00000127663|ENST00000159111|KDM4B;REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF;REV__nc|ENSG00000127663|O94953|KDM4B 7.289230182591677 0.2599242500475609 1 EN 2 -1 13.583 0 0 1.41 0 0 165.0492633685381 552.2309054010374 717.2801687695755 0 0 0 0 0 0.5 0 0 0 EN 1.41 - 5 + NaN NaN 87654.3 NaN 1861 1656 3517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3520 27.345 NaN 37453 35 0 4767.9 0.261 + 3560 EITNRFSQ 8 29 497.7521035016631 993.4896540701262 2 497.7509765625 MULTI HCD FTMS 0 0 0 3517 11647.5703125 0.12744191024258764 -8 0.1250743865966797 3 Unmodified _EITNRFSQ_ REV__ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;REV__ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;REV__ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;REV__ENSG00000171456|ENST00000375687|ASXL1 3.944395688203298 0.5361403129012058 1 SQ 2 -1 20.969 0 0 2.1107 0 0 760.3860951154312 0 760.3860951154312 0 20.969100130080562 0 0 0 0 0 0 0 SQ 2.1107 + + 1 NaN NaN 89648.7 NaN 1862 1656 3517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3521 27.349 NaN 29367 35 0 9533.9 0.261 + 31190 VVIADLSTDPT 11 13 565.8002135153312 NaN 0 565.8004760742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VVIADLSTDPT_ ENSG00000132016|ENST00000586783|BRME1;nc|ENSG00000132016|Q0VDD7-2|BRME1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83113 NaN 1863 1656 3517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3523 27.354 NaN 296380 35 0 32074 0.327 + 12996 KYIQRQETI 9 67 589.8300967878218 1177.6456406424436 2 589.830078125 MULTI HCD FTMS 0 0 0 3522 267963.78125 0.30864380656475054 9 -0.13154029846191406 1 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 103.41943736471063 0.004016698775839292 1 KY{I|L}QRC{I|L} 7 3 47.479 0 0 4.0317 0 0 0 270.1256502740844 270.1256502740844 6.4468881853385085 0 0 0 0 1.242992819099939 0 0 0.3807196863200844 KY{I|L}QRC{I|L} 4.0317 - 210 + NaN NaN 126535 NaN 1864 1657 3522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3524 27.359 NaN 681370 35 0 65136 0.261 + 2544 DTAAQITQR 9 64 502.2620358040196 1002.5095186748392 2 502.26190185546875 MULTI HCD FTMS 0 0 0 3522 293205.09375 0.010337812612913607 -15 0.24047279357910156 2 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 171.46415876497497 3.0296185862974766E-09 1 {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR 9 0 + 106.15 0 0 10.589 10.589 94.125 0 0 0 10.909940334586082 10.909940334586082 10.909940334586082 9.208187539523749 0 3.305462187404089 0 2.885151878060192 0.9456290139465234 + + {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}G[TA]R;{[ES]|[DT]|[{I|L}C]}AA{[VA]|[{I|L}G]}ATQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}G[TA]R;{[ES]|[DT]|[{I|L}C]}AA{[VA]|[{I|L}G]}AT[AG]R;{[ES]|[DT]|[{I|L}C]}[RN]{I|L}TQ[VG];{[ES]|[DT]|[{I|L}C]}A[Q{I|L}]ATQR 10.589;9.6703;9.0515;7.8129;7.5068;7.3154;6.5926;6.4012;6.3488;5.611 +;-;-;-;-;-;-;-;-;- + 571 NaN NaN 182586.8 NaN 1865 1657 3522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3525 27.362 NaN 33010 35 0 8426.4 0.261 + -1 QCQGGHQC 8 18 459.172074780611 NaN 0 459.172119140625 PEAK HCD FTMS 0 0 0 3522 21148.90625 0.530685206845511 -10 0.1717548370361328 3 Carbamidomethyl (C) _QCQGGHQC(Carbamidomethyl (C))_ REV__ENSG00000162804|ENST00000310397|SNED1;REV__nc|ENSG00000162804|Q8TER0-3|SNED1;REV__nc|ENSG00000162804|Q8TER0-4|SNED1;REV__nc|ENSG00000162804|Q8TER0-5|SNED1 0.6903765706972694 0.38822285293237185 1 A 1 -1 3.9794 0 0 0.43428 0 0 458.53380302626266 383.73496423892817 842.2687672651908 0 0 0 0 0 0 0 0 0 A 0.43428 - 1 + NaN NaN 88863.4 NaN 1866 1657 3522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3526 27.365 NaN 75320 35 0 7748.6 0.261 -1 SGCLCPTGSL 10 36 526.228627872234 NaN 0 526.2399291992188 PEAK HCD FTMS 0 0 0 3522 2539.2802734375 1 0 0 4 2 Carbamidomethyl (C) _SGC(Carbamidomethyl (C))LC(Carbamidomethyl (C))PTGSL_ ENST00000473649.1_1_7:142961996-142965927:+|nuORF 5.731851221503515 0.33527861879838866 1 S 1 -1 6.9897 0 0 0.66541 0 0 131.07243789354078 829.3144755351823 960.3869134287231 0 0 0 0 0 0 0 0 0 S 0.66541 + + 6 + NaN NaN 88087.8 NaN 1867 1657 3522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3527 27.369 NaN 19833 35 0 4861 0.261 -1 YSSMLFLLV 9 16 544.7884838379571 NaN 0 544.7882080078125 PEAK HCD FTMS 0 0 0 3522 1499.8175048828125 0.2403968290367085 1 -0.023433685302734375 5 Oxidation (M) _YSSM(Oxidation (M))LFLLV_ ENST00000493734.5_1_22:20749431-20759943:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92322.2 NaN 1868 1657 3522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3528 27.372 NaN 44494 35 0 9081.6 0.261 + -1 ALNCPSRKW 9 28 566.2909846794711 NaN 0 566.2913208007812 PEAK HCD FTMS 0 0 0 3522 6324.849609375 0.6284102970223251 -2 0.03362846374511719 6 Carbamidomethyl (C) _ALNC(Carbamidomethyl (C))PSRKW_ REV__ENSG00000102710|ENST00000350612|SUPT20H;REV__ENST00000490602.5_1_13:37598533-37607608:-|nuORF;REV__nc|ENSG00000102710|Q8NEM7-2|SUPT20H;REV__nc|ENSG00000102710|Q8NEM7-3|SUPT20H 2.0597508629832335 0.2852655770354268 1 R 1 -1 3.4949 0 0 0.30912 0 0 612.0801250212484 359.3723543756469 971.4524793968953 0 0 0 0 0 0 0 0 0 R 0.30912 + + 1 + NaN NaN 102704 NaN 1869 1657 3522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3530 27.378 NaN 97978 35 0 11507 0.327 + 8469 HADPHSIDTL 10 36 553.2672343400287 1104.5199157468574 2 553.266845703125 MULTI HCD FTMS 0 0 0 3529 35337.7421875 0.007159529055129971 193 -3.3298187255859375 1 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 13.90604991867851 0.3810395177745597 1 T{I|L} 2 -1 25.445 0 0 2.3037 0 0 872.3761729357877 0 872.3761729357877 0 5.752574989159953 0 0 0 0.4247425010840047 0 0.5 0 T{I|L} 2.3037 + + 17 NaN NaN 92368.8 NaN 1870 1658 3529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3531 27.382 NaN 62288 35 0 9082.4 0.261 + 31233 VVQEVRVSD 9 29 515.7794014708486 NaN 0 515.7616577148438 PEAK HCD FTMS 0 0 0 3529 1383.675048828125 0.2517401617808113 9 -0.11542892456054688 2 Unmodified _VVQEVRVSD_ REV__ENSG00000109321|ENST00000395748|AREG 5.731851221503515 0.26747109115447115 1 PQEE 4 -1 19.781 0 0 1.9214 0 0 101.08197162693666 442.24314294986567 543.3251145768023 0 0 0 0 0 0 0 0.5 0 PQEE 1.9214 - 15 + NaN NaN 87292.5 NaN 1871 1658 3529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3532 27.386 NaN 27672 35 0 4195.3 0.261 + 30932 VRIVPLKI 8 18 469.3295583309937 936.6445637287874 2 469.328125 MULTI HCD FTMS 0 0 0 3529 15512.2314453125 0.9863664371782531 19 -0.20129966735839844 3 Unmodified _VRIVPLKI_ REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85959.1 NaN 1872 1658 3529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3533 27.389 NaN 78063 35 0 7527.4 0.261 + 14899 LKSSDIYQTR 10 47 404.21911616757643 1209.6355191029293 3 404.21832275390625 MULTI HCD FTMS 0 0 0 3529 12086.2880859375 0.3654539730332556 8 -0.10810661315917969 4 Unmodified _LKSSDIYQTR_ REV__ENSG00000136546|ENST00000643258|SCN7A;REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF 13.042465956692817 0.38911719078024076 1 R 1 -1 21.237 0 0 1.7557 0 0 1035.5239296027323 0 1035.5239296027323 0 11.289850105233297 0 0 0 0 0 0 0.4247425010840047 R 1.7557 + + 15 + NaN NaN 88321.5 NaN 1873 1658 3529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3534 27.392 NaN 22173 35 0 3909.3 0.261 -1 0 22 583.979197136244 1748.9157620089318 3 584.3132934570312 MULTI HCD FTMS 0 0 0 3529 8079.623046875 1 0 0 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95044.1 NaN 1874 1658 3529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3536 27.401 NaN 64334 35 0 5151 0.264 + 27706 TANQHSDVI 9 32 492.74077022667655 983.4669875201531 2 492.7408752441406 MULTI HCD FTMS 0 0 0 3535 41085.4609375 0.03502474417987095 34 -0.38814544677734375 1 Unmodified _TANQHSDVI_ ENSG00000128513|ENST00000357628|POT1;nc|ENSG00000128513|Q9NUX5-2|POT1 5.296884461304476 0.3108627248283497 1 N[PG] 3 8 10.062 0 0 1.0231 0 0 697.3397083966812 0 697.3397083966812 0 4.119543704721593 0 0 0 0.5 0 0 0 N[PG] 1.0231 - 13 NaN NaN 93333.8 NaN 1875 1659 3535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3537 27.405 NaN 92861 35 0 11420 0.261 + 13687 KYPGTQTRP 9 26 524.2826868151926 1046.5508206971851 2 524.2824096679688 MULTI HCD FTMS 0 0 0 3535 27188.615234375 0.17266556062704003 10 -0.1137237548828125 2 Unmodified _KYPGTQTRP_ SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|38|3|sense 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101238.6 NaN 1876 1659 3535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3538 27.408 NaN 41127 35 0 5717.8 0.261 + 9178 HPLEDRNTI 9 20 547.7830628302789 1093.5515727273578 2 547.7830200195312 MULTI HCD FTMS 0 0 0 3535 22340.828125 0.7605492468846315 3 -0.05284309387207031 3 Unmodified _HPLEDRNTI_ ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 5.731851221503515 0.3075653528928475 1 {I|L}C{I|L} 3 7 31.198 0 0 2.8529 0 0 746.3549135141149 0 746.3549135141149 0 25.713337517843655 0 0 0 0.5 0 0 0 {I|L}C{I|L} 2.8529 - 9 NaN NaN 83442.9 NaN 1877 1659 3535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3539 27.411 NaN 26980 35 0 5551.6 0.261 -1 EDHGSWMTM 9 16 563.2036678942443 1124.3927828552885 2 563.2047119140625 MULTI HCD FTMS 0 0 0 3535 9141.8046875 0.5883391274535713 -2 0.043560028076171875 4 2 Oxidation (M) _EDHGSWM(Oxidation (M))TM(Oxidation (M))_ ENSG00000139173|ENST00000266534|TMEM117;TMEM117-KIF16B|1|fusion 3.944395688203298 0.32111559684428237 1 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3096 0 0 858.2983265607437 0 858.2983265607437 0 25.969100130080562 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.3096 + + 2 NaN NaN 97233.1 NaN 1878 1659 3535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3540 27.414 NaN 116230 35 0 26522 0.261 -1 FHMLFDCS 8 25 528.7177036291126 1055.4208543250252 2 528.7178344726562 MULTI HCD FTMS 0 0 0 3535 19410.443359375 0.05193346289925781 -13 0.22524452209472656 5 Carbamidomethyl (C) _FHMLFDC(Carbamidomethyl (C))S_ ENSG00000145740|ENST00000396591|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;nc|ENSG00000145740|Q8TAD4-2|SLC30A5 0.7936320650641473 0.540814922690045 1 G 1 -1 1.5938 0 0 0.15101 0 0 545.7215878228752 449.66355310611567 995.385140928991 0 0 0 0 0 0 0 0 0 G 0.15101 - 1 + NaN NaN 101573.7 NaN 1879 1659 3535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3542 27.42 NaN 298870 35 0 25083 0.327 + 26044 SPEPKDQTL 9 77 507.7582931181714 1013.5020333031429 2 507.75823974609375 MULTI HCD FTMS 0 0 0 3541 155944.71875 0.954178602110836 -2 0.04244422912597656 1 Unmodified _SPEPKDQTL_ ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|4|fusion 53.40400417844725 0.026808823219830042 1 SP{M(Oxidation (M))|F}{I|L}[KQ]S 7 5 50.24 0 0 4.957 0 0 0 223.07273279361564 223.07273279361564 38.02124182077982 0 0 0 0 1 1.3979400086720375 0.7059771852360797 0 SP{M(Oxidation (M))|F}{I|L}[KQ]S 4.957 - 185 + NaN NaN 125356.4 NaN 1880 1660 3541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3543 27.424 NaN 128250 35 0 18668 0.261 -1 QPMQPTPSM 9 34 524.7256144213683 1047.4366759095365 2 524.7252807617188 MULTI HCD FTMS 0 0 0 3541 42341.05078125 0.40049035115119125 -13 0.23763275146484375 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 30.636539890814138 0.10832830463492794 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.0994 0 0 882.3911111896131 0 882.3911111896131 0 13.89075625191822 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0994 + + 7 + NaN NaN 101396.1 NaN 1881 1660 3541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3544 27.427 NaN 72930 35 0 11123 0.261 + 25452 SEVLMPNR 8 21 473.2447076621444 NaN 0 473.25360107421875 PEAK HCD FTMS 0 0 0 3541 6226.65625 0.4171411008250712 -1 0.022317886352539062 3 Unmodified _SEVLMPNR_ ENSG00000206043|ENST00000579455|C18orf63 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95127.6 NaN 1882 1660 3541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3545 27.431 NaN 27144 35 0 2861.2 0.261 -1 ATCLGYICW 9 24 543.7421875 NaN 0 543.7421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _ATCLGYIC(Carbamidomethyl (C))W_ nc|ENSG00000225830|P0DP91|ERCC6 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85666.4 NaN 1883 1660 3541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3546 27.434 NaN 68525 35 0 18234 0.263 + 32865 WWYELRHI 8 31 401.5425262835222 1201.6057494507666 3 401.8778076171875 MULTI HCD FTMS 0 0 0 3541 8461.599609375 0.6950014822971371 8 -0.08220100402832031 5 Unmodified _WWYELRHI_ REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF;REV__ENST00000554546.5_1_14:73822463-73876743:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92445.4 NaN 1884 1660 3541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3547 27.437 NaN 11263 35 0 4842.5 0.261 + -1 VFMPFFCFL 9 10 604.288333862104 1206.5621147910078 2 604.2882080078125 MULTI HCD FTMS 0 0 0 3541 3468.187744140625 0.20570022452297845 -1 0.022317886352539062 6 Carbamidomethyl (C) _VFMPFFC(Carbamidomethyl (C))FL_ REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|59 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88295.7 NaN 1885 1660 3541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3549 27.442 NaN 72598 35 0 14164 0.411 + 26451 STPDLAANR 9 38 472.74352443124883 NaN 0 472.7436828613281 PEAK HCD FTMS 0 0 0 3548 23935.59765625 0.3884515608746205 -13 0.2307453155517578 1 Unmodified _STPDLAANR_ ENSG00000160877|ENST00000292431|NACC1 8.745405648335112 0.25286782695573473 1 P 1 8 9.2917 0 0 0.98485 0 0 188.07983898361164 655.3147066705686 843.3945456541803 0 0 0 0 0 0.3807196863200844 0 0 0 + P 0.98485 + + 4 + NaN NaN 100942.1 NaN 1886 1661 3548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3551 27.45 NaN 1172000 35 0 152410 0.327 -1 0 85 485.76418470618944 969.5138164791789 2 485.763916015625 MULTI HCD FTMS 0 0 0 3550 1024660.625 0.6222524055553965 -6 0.11319732666015625 1 NaN NaN 1 [PS]EAQPKT 8 -1 101.79 0 0 10.5 0 0 0 128.07267029614903 128.07267029614903 59.22721186118885 0 0 0 0 2.75 1.6989700043360187 2.49607625286837 0.3494850021680094 [PS]EAQPKT 10.5 - 881 NaN NaN 255611 NaN 1887 1662 3550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3552 27.454 NaN 128390 35 0 12997 0.261 + 25433 SESAQSKML 9 44 490.73979447424375 979.4650360152875 2 490.7399597167969 MULTI HCD FTMS 0 0 0 3550 68695.1953125 0.2451318400625897 -10 0.16777610778808594 2 Unmodified _SESAQSKML_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 41.95555342248728 0.056367691549927025 1 KM{I|L} 3 6 29.182 0 0 2.9794 0 0 589.2357655255875 0 589.2357655255875 0 13.92159058960253 0 0 0 0.4247425010840047 0 0 0.3252574989159953 + KM{I|L} 2.9794 + + 14 NaN NaN 93200.5 NaN 1888 1662 3550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3554 27.459 NaN 150920 35 0 45286 0.327 + 24021 RWGLMHPE 8 42 513.2530017765168 1024.4914506198336 2 513.2527465820312 MULTI HCD FTMS 0 0 0 3553 111497.7734375 0.5656435020880716 -9 0.1528034210205078 1 Unmodified _RWGLMHPE_ REV__ENSG00000118997|ENST00000312428|DNAH7 5.230669730166228 0.5342319408533849 1 R 1 -1 21.237 0 0 2.0729 0 0 850.3798763784258 0 850.3798763784258 0 6.059837384595923 0 0 0 0.4247425010840047 0 0 0 R 2.0729 + + 20 + NaN NaN 96003.9 NaN 1889 1663 3553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3555 27.463 NaN 69886 35 0 9321.6 0.261 + 28472 TPNEERNVM 9 36 545.2534954223507 1088.4924379115014 2 545.2532348632812 MULTI HCD FTMS 0 0 0 3553 42822.32421875 0.41349394189298755 -11 0.1770763397216797 2 Unmodified _TPNEERNVM_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 7.101721422024254 0.29718071671418667 1 VM 2 7 20.969 0 0 1.9264 0 0 840.3708363263687 0 840.3708363263687 0 1.5051499783199063 0 0 0 0 0 0 0 + VM 1.9264 + + 3 NaN NaN 92694.4 NaN 1890 1663 3553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3557 27.468 NaN 84748 35 0 15862 0.411 + 23115 REYVNVSQ 8 54 497.7521035016631 993.4896540701262 2 497.7521667480469 MULTI HCD FTMS 0 0 0 3556 91395.1328125 1 0 0 1 Unmodified _REYVNVSQ_ ENSG00000213658|ENST00000395456|LAT;ENST00000562701.5_1_16:28997691-29001330:+|nuORF;ENST00000564447.5_1_16:29000600-29001330:+|nuORF;nc|ENSG00000213658|O43561-3|LAT;nc|ENSG00000213658|O43561-4|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT 34.40172386719151 0.3028461740636462 1 VSQ 3 5 46.242 0 0 4.6545 0 0 661.3202337593825 0 661.3202337593825 0 41.63811573052314 0 0 0 1.5 0 0.3807196863200844 0.4247425010840047 + VSQ 4.6545 + + 27 + NaN NaN 109956.5 NaN 1891 1664 3556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3559 27.476 NaN 17590000 35 0 1659500 0.327 + 2545 DTAAQITQR 9 117 502.2620358040196 1002.5095186748392 2 502.2623596191406 MULTI HCD FTMS 0 0 0 3558 17259260 0.6085262484207961 -7 0.09891510009765625 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 243.32672525570652 3.537141935018953E-32 1 DTAAQ{I|L}TQR 9 0 + 139.3 0 0 13.895 13.895 94.392 0 0 0 87.77966728076501 16.394615430168997 16.394615430168997 9.208187539523749 0 2.853917193908117 1.3979400086720375 1.1906140654642814 1.9291746928241125 + + DTAAQ{I|L}TQR;DTAA[AG]{I|L}TQR;DTAAQ{I|L}T[AG]R;DTAA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;[TA]DAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}G[TA]R;[TA]DAQ{I|L}T[AG]R 13.895;12.977;12.977;12.062;10.813;9.8943;9.2035;9.1901;8.3458;8.285 +;-;-;-;+;-;-;-;-;- + 6218 + NaN NaN 906810.8 NaN 1892 1665 3558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3560 27.48 NaN 104280 35 0 13598 0.261 + 12997 KYIQRQETI 9 38 589.8300967878218 1177.6456406424436 2 589.8301391601562 MULTI HCD FTMS 0 0 0 3558 103017.5859375 0.11865685623086913 17 -0.14963340759277344 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 53.40400417844725 0.026808823219830042 1 KY{I|L}Q 4 5 36.186 0 0 3.0727 0 0 0 642.3225802057249 642.3225802057249 -4.559771852360797 0 -4.559771852360797 0 0 0.4247425010840047 0 0 0 + KY{I|L}Q 3.0727 + + 29 + NaN NaN 100378.6 NaN 1893 1665 3558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3562 27.485 NaN 181040 35 0 12652 0.411 -1 DTAKTMFR 8 75 493.2426153742058 NaN 0 493.25640869140625 PEAK HCD FTMS 0 0 0 3561 10633.6484375 0.9037252997297005 -1 0.009191513061523438 1 Oxidation (M) _DTAKTM(Oxidation (M))FR_ ENSG00000213928|ENST00000396864|IRF9;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF 19.438996006549623 0.38500361301801034 1 AQ{I|L}TQ 5 -1 41.055 0 0 4.1703 0 0 269.0725088088936 171.08893762760002 440.16144643649363 0 0 0 0 0 0 0 0.5994850021680094 1.4258337024346173 AQ{I|L}TQ 4.1703 - 255 + NaN NaN 129394.6 NaN 1894 1666 3561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3564 27.492 NaN 249940 35 0 18538 0.327 + 26045 SPEPKDQTL 9 64 507.7582931181714 1013.5020333031429 2 508.24560546875 MULTI HCD FTMS 0 0 0 3563 59665.71875 0.6252276487524857 5 -0.04029273986816406 1 Unmodified _SPEPKDQTL_ ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|4|fusion 49.55428908609986 0.03219431099695407 1 [PS]E[NG][VP]TT{I|L} 10 5 + 45.758 0 0 4.5148 4.5148 89.138 0 0 0 5.558685151513444 32.17445787282428 5.558685151513444 26.567022752910304 0 1.1694451763165201 1.5228787452803376 0.7742275032520141 0 [PS]E[NG][VP]TT{I|L};[EP]S[NG][VP]TT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[{M(Oxidation (M))|F}C]|[YS]}[VP]TT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]TT{I|L} 4.5148;1.8935;1.2447;0.41085 -;-;-;- 141 NaN NaN 120330.3 NaN 1895 1667 3563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3565 27.497 NaN 105030 35 0 12478 0.261 + 28744 TTAGGVPVTR 10 34 479.7698378366112 957.5251227400224 2 479.7696838378906 MULTI HCD FTMS 0 0 0 3563 100560.125 0.46857731224083754 -5 0.04245948791503906 2 Unmodified _TTAGGVPVTR_ ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1 19.361941925380144 0.3300069447713393 1 GA[PS] 4 8 24.693 0 0 2.5788 0 0 627.3702870099625 0 627.3702870099625 0 -0.9691001300805624 -0.9691001300805624 0 0 0.8494850021680094 0 0 0 GA[PS] 2.5788 - 89 NaN NaN 92828.9 NaN 1896 1667 3563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3567 27.501 NaN 245760 35 0 23054 0.327 + 28543 TPQPKSSNTA 10 53 515.7619046778086 1029.5092564224171 2 515.7616577148438 MULTI HCD FTMS 0 0 0 3566 205136.484375 0.9536853611608682 -2 0.016538619995117188 1 Unmodified _TPQPKSSNTA_ REV__ENSG00000028528|ENST00000559844|SNX1;REV__nc|ENSG00000028528|Q13596-3|SNX1 41.95555342248728 0.12843670176738353 1 TPQEER{I|L}SA 9 -1 + 97.986 0 0 9.5178 9.5178 93.445 0 0 0 61.17599686953518 8.384767769392738 8.384767769392738 9.208187539523749 0 2.2856668758921828 1.5228787452803376 0.5 0.6307196863200843 TPQEER{I|L}SA;TP[AG]EER{I|L}SA;[TP]QEER{I|L}SA;[TP]QN[TP]SKSA;[TP][AG]EER{I|L}SA;[TP]QGG[TP]SKSA;[TP][AG]N[TP]SKSA;[TP]QEER{[SA]|[TG]}{I|L} 9.5178;8.6233;6.8037;6.0808;5.9093;5.1906;5.1906;4.5693 -;-;-;-;-;-;-;- 259 + NaN NaN 121843.1 NaN 1897 1668 3566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3568 27.506 NaN 173550 35 0 67987 0.261 + 27501 TAAAIGATPR 10 33 464.7639357456857 NaN 0 464.7634582519531 PEAK HCD FTMS 0 0 0 3566 59254.1875 1 0 0 2 Unmodified _TAAAIGATPR_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 37.07464296494664 0.15281465995274182 1 {I|L}QT 3 8 32.747 0 0 3.5307 0 0 314.15743584508397 268.1411532037719 582.2985890488559 0 0 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {I|L}QT 3.5307 - 58 + NaN NaN 110855 NaN 1898 1668 3566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3570 27.511 NaN 104680 35 0 9109.4 0.411 + 8470 HADPHSIDTL 10 59 553.2672343400287 1104.5199157468574 2 553.2671508789062 MULTI HCD FTMS 0 0 0 3569 45480.32421875 0.009214445590585934 204 -3.6468257904052734 1 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 13.90604991867851 0.3810395177745597 1 Q[C(Carbamidomethyl (C))R]TT{I|L} 6 -1 35.138 0 0 3.1813 0 0 327.1438160626969 0 327.1438160626969 0 15.445312593723983 0 0 0 0.4247425010840047 0 1 0 Q[C(Carbamidomethyl (C))R]TT{I|L} 3.1813 - 130 NaN NaN 118046.8 NaN 1899 1669 3569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3572 27.518 NaN 361610 35 0 43889 0.411 + 25950 SPDENENEV 9 85 516.7094842005853 1031.4044154679705 2 516.7090454101562 MULTI HCD FTMS 0 0 0 3571 169831.109375 0.3048690396050712 -13 0.16457557678222656 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 53.40400417844725 0.026808823219830042 1 C(Carbamidomethyl (C))NENEV 6 4 46.349 0 0 4.4938 0 0 268.1163807599625 0 268.1163807599625 0 23.68562527100117 0 0 0 1.1307196863200843 0 0.2614393726401688 0.3807196863200844 C(Carbamidomethyl (C))NENEV 4.4938 - 746 NaN NaN 192906.7 NaN 1900 1670 3571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3574 27.525 NaN 55560 35 0 6012.6 0.411 -1 TPGPSEESM 9 52 475.69171142578125 NaN 0 475.69171142578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _TPGPSEESM(Oxidation (M))_ chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 15.847184025352803 0.21527282152051216 1 SE 2 -1 20.969 0 0 2.2087 0 0 165.0482575257933 565.2254122369749 730.2736697627681 0 0 0 0 0 1 0 0 0 SE 2.2087 + + 13 + NaN NaN 107460 NaN 1901 1671 3573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3577 27.539 NaN 582390 35 0 163760 0.327 + -1 FCDVCLWGG 9 36 528.7177036291126 1055.4208543250252 2 528.7175903320312 MULTI HCD FTMS 0 0 0 3576 291434.46875 0.7797452582701013 1 -0.0155792236328125 1 Carbamidomethyl (C) _FC(Carbamidomethyl (C))DVCLWGG_ REV__ENST00000374586.7_1_9:111870788-111881618:-|nuORF 4.75600775471527 0.31496297302216103 1 AN 2 -1 14.693 0 0 1.3921 0 0 852.3395183693808 0 852.3395183693808 0 11.593793813122062 0 0 0 0 0 0 0 AN 1.3921 - 4 NaN NaN 166677.9 NaN 1902 1673 3576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3578 27.543 NaN 191740 35 0 14635 0.261 -1 AAEPNKTEI 9 63 507.7582931181714 1013.5020333031429 2 508.24566650390625 MULTI HCD FTMS 0 0 0 3576 60507.9921875 0.634053699154079 11 -0.111968994140625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AAEPNKTEI_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000528072.1_1_11:47198065-47198404:-|nuORF 30.636539890814138 0.10832830463492794 1 [PS]E 3 -1 14.314 0 0 1.4123 0 0 0 697.3510072623803 697.3510072623803 4.849979783891014 0 0 0 0 0.7887254899964358 0 0.3494850021680094 0 [PS]E 1.4123 - 77 NaN NaN 109373.9 NaN 1903 1673 3576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3579 27.547 NaN 201580 35 0 15811 0.261 + 2555 DTAAQNPLR 9 61 493.25681777406294 NaN 0 493.2577819824219 PEAK HCD FTMS 0 0 0 3576 85768.0703125 0.9580411244314029 -3 0.021396636962890625 3 Unmodified _DTAAQNPLR_ REV__ENST00000571637.1_1_17:3808599-3819210:-|nuORF 43.85829265575387 0.06590164363483184 1 AQ{I|L}TQ 5 -1 63.248 0 0 6.4243 0 0 269.1022099924208 171.08889185123283 440.19110184365366 0 0 0 0 0 2.6237125054200234 0 0.6382104921644451 1.0451140161145327 AQ{I|L}TQ 6.4243 - 183 + NaN NaN 109394.3 NaN 1904 1673 3576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3580 27.55 NaN 335140 35 0 55008 0.261 + 2437 DPTPQHYPS 9 54 521.2355511264611 1040.4565493197222 2 521.7372436523438 MULTI HCD FTMS 0 0 0 3576 36596.44140625 0.701345979190541 1 -0.0155792236328125 4 Unmodified _DPTPQHYPS_ ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 1.6526216038709556 0.33848895094777925 1 N 1 9 1.5938 0 0 0.15318 0 0 519.6386915089785 403.76362024478755 923.4023117537661 0 0 0 0 0 0 0 0 0 N 0.15318 - 1 + NaN NaN 134280.2 NaN 1905 1673 3576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3582 27.555 NaN 212820 35 0 21241 0.411 -1 QPMQPTPSM 9 63 524.7256144213683 1047.4366759095365 2 524.725830078125 MULTI HCD FTMS 0 0 0 3581 74747.0859375 0.707008591952424 1 -0.0074443817138671875 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 39.94969957227396 0.06557568441294001 1 PS{M(Oxidation (M))|F} 3 -1 40.49 0 0 3.8656 0 0 698.3061896507601 0 698.3061896507601 0 33.499934467764874 0 0 0 1.305462187404089 0 0.4247425010840047 0 PS{M(Oxidation (M))|F} 3.8656 + + 35 + NaN NaN 153813.8 NaN 1906 1674 3581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3585 27.569 NaN 1236100 35 0 143310 0.327 -1 0 87 485.76418470618944 969.5138164791789 2 485.7639465332031 MULTI HCD FTMS 0 0 0 3584 982324.4375 0.5965426301710645 8 -0.08214569091796875 1 NaN NaN 1 [PS]EAQPKT 8 -1 99.523 0 0 10.265 0 0 0 128.07227469028513 128.07227469028513 59.992121641696684 0 0 0 0 2.7134679910804405 1.6989700043360187 2.0669015600442577 0.6549471895720984 [PS]EAQPKT 10.265 - 934 NaN NaN 266389.2 NaN 1907 1676 3584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3586 27.573 NaN 102110 35 0 33800 0.261 + 28704 TSPLDQQR 8 30 472.74352443124883 NaN 0 472.74310302734375 PEAK HCD FTMS 0 0 0 3584 56158.87890625 0.9114041972712279 1 -0.008937835693359375 2 Unmodified _TSPLDQQR_ REV__ENST00000359308.8_1_22:42017799-42017931:+|nuORF 4.3292370932331545 0.38822285293237185 1 C 1 -1 3.0989 0 0 0.32846 0 0 611.3588922689446 226.07990442447502 837.4387966934196 0 0 0 0 0 0 0 0 0 C 0.32846 - 2 + NaN NaN 100322.3 NaN 1908 1676 3584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3588 27.578 NaN 230170 35 0 33618 0.327 + 25434 SESAQSKML 9 50 490.73979447424375 979.4650360152875 2 490.7397155761719 MULTI HCD FTMS 0 0 0 3587 156180.515625 0.5573143362198705 5 -0.04724884033203125 1 Unmodified _SESAQSKML_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 65.47368725323818 0.010552856507075443 1 {[ES]|[DT]|[{I|L}C]}SAQSKM{I|L} 9 0 + 54.975 0 0 5.6127 5.6127 85.989 0 0 0 8.010299956639813 16.478174818886373 8.010299956639813 8.010299956639813 0 2.0682503180159344 0 1.274227503252014 0 + + {[ES]|[DT]|[{I|L}C]}SAQSKM{I|L};{[MG]|[TS]}DAQSKM{I|L};{[ES]|[DT]|[{I|L}C]}SA[AG]SKM{I|L};{[MG]|[TS]}DA[AG]SKM{I|L} 5.6127;4.7949;4.6726;3.8548 +;-;-;- + 67 NaN NaN 134072 NaN 1909 1677 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3589 27.582 NaN 238570 35 0 69499 0.261 -1 0 53 513.2530017765168 1024.4914506198336 2 513.2528076171875 MULTI HCD FTMS 0 0 0 3587 79740.6015625 0.40453501209784687 5 -0.04724884033203125 2 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS][Y{I|L}]DR 8 -1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS][Y{I|L}]D + + 18.852 -13.69 -1.6099 1.8401 1.8401 58.877 0 0 0 0 0.6639311543577975 0 0 0 0.4247425010840047 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS][Y{I|L}]DR 1.8401 - 28 + NaN NaN 113923.2 NaN 1910 1677 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3591 27.587 NaN 101000 35 0 16741 0.327 -1 CCCSLYSCM 9 42 543.165187190602 1084.3158214480038 2 543.1649169921875 MULTI HCD FTMS 0 0 0 3590 13018.7734375 0.1700475946686542 -1 0.009243011474609375 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))CCSLYSCM(Oxidation (M))_ ENST00000409158.5_1_2:131904864-131905029:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97590.2 NaN 1911 1678 3590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3592 27.592 NaN 47168 35 0 8785.8 0.261 + 23116 REYVNVSQ 8 19 497.7521035016631 993.4896540701262 2 497.7516174316406 MULTI HCD FTMS 0 0 0 3590 62229.34375 0.6808824697225996 14 -0.17702293395996094 2 Unmodified _REYVNVSQ_ ENSG00000213658|ENST00000395456|LAT;ENST00000562701.5_1_16:28997691-29001330:+|nuORF;ENST00000564447.5_1_16:29000600-29001330:+|nuORF;nc|ENSG00000213658|O43561-3|LAT;nc|ENSG00000213658|O43561-4|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT 9.38312468134398 0.524755689532147 1 VSQ 3 5 31.198 0 0 3.1402 0 0 661.312791892775 0 661.312791892775 0 31.197887582883936 0 0 0 0.5 0 0 0 + VSQ 3.1402 + + 6 NaN NaN 86619.8 NaN 1912 1678 3590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3593 27.595 NaN 64336 35 0 7343.8 0.261 + 28473 TPNEERNVM 9 38 545.2534954223507 1088.4924379115014 2 545.254150390625 MULTI HCD FTMS 0 0 0 3590 36704.45703125 0.35441959071077184 4 -0.038005828857421875 3 Unmodified _TPNEERNVM_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 9.5439744041441 0.27789851728676895 1 TPNE 4 5 24.157 0 0 2.2193 0 0 0 644.2836397760374 644.2836397760374 3.187587626244124 0 0 0 0 0 0 0 0 + TPNE 2.2193 + + 10 + NaN NaN 97751.2 NaN 1913 1678 3590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3595 27.6 NaN 16654000 35 0 1613600 0.326 + 2546 DTAAQITQR 9 110 502.2620358040196 1002.5095186748392 2 502.26239013671875 MULTI HCD FTMS 0 0 0 3594 15902020 0.5606727387450254 7 -0.06650543212890625 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 228.36842504977758 2.46120000212446E-24 1 DTAAQ{I|L}TQR 9 0 + 134.5 0 0 13.416 13.416 95.074 0 0 0 81.45457225513923 14.092568545288074 14.092568545288074 9.208187539523763 0 2.853917193908117 1.3979400086720375 0.9802046884880937 1.6593793813122062 + + DTAAQ{I|L}TQR;DTAAQ{I|L}T[AG]R;DTAA[AG]{I|L}TQR;DTAA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;[TA]DAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;[TA]DAQ{I|L}T[AG]R;[TA]DA[AG]{I|L}TQR 13.416;12.498;12.498;11.583;10.061;9.368;9.1424;8.4579;8.4495;7.7651 +;-;-;-;+;-;-;-;-;- + 7920 + NaN NaN 710982.7 NaN 1914 1679 3594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3596 27.605 NaN 60676 35 0 8100.5 0.261 + 12998 KYIQRQETI 9 31 589.8300967878218 1177.6456406424436 2 589.830322265625 MULTI HCD FTMS 0 0 0 3594 68763.84375 0.07920299672597537 31 -0.4507579803466797 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 9.5439744041441 0.27789851728676895 1 KY{I|L}Q 4 5 31.938 0 0 2.712 0 0 0 642.3227022760374 642.3227022760374 13.979400086720375 0 0 0 0 0 0 0 0 + KY{I|L}Q 2.712 + + 10 + NaN NaN 94754.1 NaN 1915 1679 3594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3599 27.616 NaN 223270 35 0 34922 0.327 + 26303 SRRREASP 8 48 479.7608282451874 NaN 0 479.7696838378906 PEAK HCD FTMS 0 0 0 3598 7317.13671875 1 0 0 1 Unmodified _SRRREASP_ ENST00000397147.6_1_22:37257112-37260979:+|nuORF 15.847184025352803 0.3871869056683869 1 AGG 3 7 14.693 0 0 1.5345 0 0 202.0781069576854 567.3261812799436 769.4042882376291 0 0 0 0 0 0 0 0 0 AGG 1.5345 - 41 + NaN NaN 113464.3 NaN 1916 1681 3598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3600 27.62 NaN 129500 35 0 12630 0.261 + -1 PHLGVHVPC 9 49 508.2599156962147 NaN 0 508.24493408203125 PEAK HCD FTMS 0 0 0 3598 6851.20849609375 0.31459687905205663 1 -0.009038925170898438 2 Carbamidomethyl (C) _PHLGVHVPC(Carbamidomethyl (C))_ REV__ENST00000454498.6_1_8:19363232-19363280:-|nuORF 2.302733041254933 0.2840881193086663 1 PA 2 -1 9.464 0 0 0.93286 0 0 137.08855416838043 706.3037203424436 843.3922745108241 0 0 0 0 0 0 0 0 0 PA 0.93286 - 28 + NaN NaN 96700.1 NaN 1917 1681 3598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3603 27.632 NaN 81055 35 0 7483 0.327 + 8471 HADPHSIDTL 10 28 553.2672343400287 1104.5199157468574 2 553.2676391601562 MULTI HCD FTMS 0 0 0 3602 18231.359375 0.003693726284697393 217 -4.11235237121582 1 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 13.90604991867851 0.3810395177745597 1 T{I|L} 2 -1 27.959 0 0 2.5313 0 0 872.3757482563216 0 872.3757482563216 0 7.257724967479859 0 0 0 0.5 0 0.5 0 T{I|L} 2.5313 + + 11 NaN NaN 92977.8 NaN 1918 1683 3602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3604 27.636 NaN 78565 35 0 5666.9 0.261 + 8141 GPDARPPYL 9 36 493.25681777406294 NaN 0 493.2560729980469 PEAK HCD FTMS 0 0 0 3602 19073.748046875 0.2130563851952047 7 -0.09366226196289062 2 Unmodified _GPDARPPYL_ ENSG00000198010|ENST00000637795|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2 15.847184025352803 0.21527282152051216 1 AQ{I|L}TQ 5 8 45.662 0 0 4.6381 0 0 269.0997428705884 171.0880068414672 440.1877497120556 0 0 0 0 0 1.805462187404089 0 0 0.805462187404089 AQ{I|L}TQ 4.6381 - 51 + NaN NaN 86654.9 NaN 1919 1683 3602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3605 27.64 NaN 235040 35 0 44276 0.262 + 21113 PNTGQPKKQGR 11 66 404.2253006244301 NaN 0 404.2258605957031 PEAK HCD FTMS 0 0 0 3602 7828.1982421875 0.1508525573823382 10 -0.15285682678222656 3 Unmodified _PNTGQPKKQGR_ ZSWIM3|p.E611K|1|0.19|ENSG00000132801|chr20:45878389-45878389|G/A|missense_variant 12.855947597645695 0.30565152245264504 1 GQ 2 9 8.8566 0 0 1.0982 0 0 447.24456379593204 171.08872400455314 618.3332878004852 0 0 0 0 0 0 0 0 0.566901560044258 + GQ 1.0982 + + 21 + NaN NaN 113806.2 NaN 1920 1683 3602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3606 27.643 NaN 64892 35 0 9780.7 0.261 + 28756 TTGESVITR 9 36 482.25919884152256 962.5038447498451 2 482.2587890625 MULTI HCD FTMS 0 0 0 3602 20733.6484375 0.5743566314815814 -8 0.06985282897949219 4 Unmodified _TTGESVITR_ ENSG00000025800|ENST00000373625|KPNA6;KPNA6|p.S74C|1|0.07|ENSG00000025800|chr1:32156935-32156935|C/G|missense_variant 5.296884461304476 0.3108627248283497 1 W[PS] 3 8 14.705 0 0 1.5278 0 0 574.3453846662125 0 574.3453846662125 0 2.3978685854810795 0 0 0 0.4247425010840047 0 0 0 W[PS] 1.5278 - 8 NaN NaN 95889.9 NaN 1921 1683 3602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3607 27.647 NaN 56355 35 0 8222 0.261 + 25241 SASPHKDLPN 10 35 533.2692642090732 NaN 0 533.2694091796875 PEAK HCD FTMS 0 0 0 3602 15141.025390625 0.6044662732021736 5 -0.063323974609375 5 Unmodified _SASPHKDLPN_ ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-4|TDRD1 4.897010918128616 0.3359931263921593 1 S 1 9 10.485 0 0 0.98491 0 0 158.066251987901 816.4000069733171 974.466258961218 0 0 0 0 0 0 0 0.5 0 + S 0.98491 + + 4 + NaN NaN 89149.5 NaN 1922 1683 3602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3609 27.652 NaN 718440 35 0 136460 0.411 + 25951 SPDENENEV 9 83 516.7094842005853 1031.4044154679705 2 516.7093505859375 MULTI HCD FTMS 0 0 0 3608 553612.4375 0.9938066868618871 1 -0.0076732635498046875 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 114.18643581695662 0.002258955990713129 1 [PS]DENENEV 9 0 + 82.234 0 0 7.973 7.973 91.372 0 0 0 3.2568864632742844 64.30191582041068 3.2568864632742844 9.208187539523749 0 1.9291746928241125 0 0.7614393726401688 0.8494850021680094 + + [PS]DENENEV;[PS]DEGGENEV;[PS]DENEGGEV;[PS]DEGGEGGEV;[PS]DENE{[SA]|[TG]}[PS];[PS]DEGGE{[SA]|[TG]}[PS] 7.973;7.0802;7.0802;5.368;3.2681;2.3795 +;-;-;-;-;- + 614 NaN NaN 306343.9 NaN 1923 1684 3608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3611 27.659 NaN 177690 35 0 42877 0.411 + -1 NNLNMCNSE 9 44 527.7006769482297 1053.3868009632592 2 528.71728515625 MULTI HCD FTMS 0 0 0 3610 5260.72705078125 0.5942066832615566 -1 0.0076732635498046875 1 Oxidation (M) _NNLNM(Oxidation (M))CNSE_ REV__ENSG00000223547|ENST00000439326|ZNF844 1.4819007175156935 0.3397831423917744 1 P 1 -1 3.9794 0 0 0.37777 0 0 86.02226771101193 867.2811983697874 953.3034660807994 0 0 0 0 0 0 0 0 0 P 0.37777 - 3 + NaN NaN 145996.7 NaN 1924 1685 3610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3613 27.667 NaN 82336 35 0 11402 0.327 + 28757 TTGESVITR 9 39 482.25919884152256 962.5038447498451 2 482.2588806152344 MULTI HCD FTMS 0 0 0 3612 17581.53125 0.4870377297791084 -5 0.0502166748046875 1 Unmodified _TTGESVITR_ ENSG00000025800|ENST00000373625|KPNA6;KPNA6|p.S74C|1|0.07|ENSG00000025800|chr1:32156935-32156935|C/G|missense_variant 15.248480904072842 0.22861284681709862 1 {I|L}[VS]W[PS] 6 7 19.226 0 0 1.9975 0 0 275.15852553535314 0 275.15852553535314 0 8.767959391884547 0 0 0 0.805462187404089 0 0 0 {I|L}[VS]W[PS] 1.9975 - 63 NaN NaN 91324.3 NaN 1925 1686 3612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3614 27.671 NaN 56383 35 0 11476 0.261 -1 QPDEEPMDM 9 27 562.1993917742244 1122.3842306152487 2 562.1996459960938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84033.2 NaN 1926 1686 3612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3616 27.676 NaN 126630 35 0 15439 0.327 -1 QPMQPTPSM 9 33 524.7256144213683 1047.4366759095365 2 524.7257080078125 MULTI HCD FTMS 0 0 0 3615 43966.1328125 0.4158614782568278 14 -0.22490310668945312 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 13.042465956692817 0.2476723265019929 1 {M(Oxidation (M))|F} 1 -1 19.292 0 0 1.8418 0 0 882.3911111896131 0 882.3911111896131 0 19.291746928241125 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.8418 + + 4 + NaN NaN 97292.4 NaN 1927 1687 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3617 27.681 NaN 67709 35 0 7406 0.261 -1 RPSSAPDLM 9 30 495.23966200149835 988.4647710697967 2 495.2399597167969 MULTI HCD FTMS 0 0 0 3615 30914.873046875 0.7434703334556448 -12 0.11371803283691406 2 Oxidation (M) _RPSSAPDLM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 21.536976647645854 0.1742816388551942 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.0569 0 0 710.3341541974625 0 710.3341541974625 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 3.0569 + + 8 NaN NaN 90323.4 NaN 1928 1687 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3618 27.684 NaN 70880 35 0 16619 0.261 + 3836 EPHMLGWR 8 37 513.2530017765168 1024.4914506198336 2 513.2415161132812 MULTI HCD FTMS 0 0 0 3615 27980.931640625 0.1419511051829389 15 -0.23912429809570312 3 Unmodified _EPHMLGWR_ ENSG00000118997|ENST00000312428|DNAH7 4.75600775471527 0.5349361699807423 1 D{I|L} 2 7 20.969 0 0 2.0468 0 0 0 793.3639010065061 793.3639010065061 0.17220322351953143 0 0 0 0 0 0 0 0 D{I|L} 2.0468 - 6 + NaN NaN 88120.9 NaN 1929 1687 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3619 27.687 NaN 38219 35 0 8209.3 0.261 + 28827 TVEESFCC 8 28 459.1720954917658 NaN 0 459.1721496582031 PEAK HCD FTMS 0 0 0 3615 29275.580078125 0.7561129538376078 10 -0.16136741638183594 4 Unmodified _TVEESFCC_ REV__ENSG00000101493|ENST00000443185|ZNF516;REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93327.5 NaN 1930 1687 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3620 27.691 NaN 31480 35 0 9691.3 0.261 + 17207 LYNFHRML 8 23 547.2849776104613 1092.5554022877225 2 547.2861938476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LYNFHRML_ REV__ENSG00000114841|ENST00000420323|DNAH1;REV__ENST00000486752.5_1_3:52350520-52422757:+|nuORF;REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1 5.230669730166228 0.5342319408533849 1 [Y{I|L}]N 3 -1 30.458 0 0 2.7877 0 0 0 699.3416231744749 699.3416231744749 30.457574905606748 0 0 0 0 0 2 0 0 [Y{I|L}]N 2.7877 + + 1 + NaN NaN 88298.6 NaN 1931 1687 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3622 27.696 NaN 99131 35 0 8990.8 0.326 + 4176 ETSPLTAEK 9 36 488.2533530050766 974.4921530769532 2 488.2533874511719 MULTI HCD FTMS 0 0 0 3621 23864.20703125 0.36374994075672773 -14 0.14062118530273438 1 Unmodified _ETSPLTAEK_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 2.9952420565917617 0.3283108881486655 1 YT 2 8 6.4537 0 0 0.66226 0 0 364.1960237818344 343.1618746393188 707.3578984211532 0 0 0 0 0 0 0 0 0 YT 0.66226 - 17 + NaN NaN 98240.6 NaN 1932 1688 3621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3623 27.7 NaN 229470 35 0 21935 0.261 + -1 GTEQDPTIM 9 63 504.2204032546655 1006.426253576131 2 504.22003173828125 MULTI HCD FTMS 0 0 0 3621 28395.0078125 0.7756315571857286 9 -0.1419086456298828 2 Oxidation (M) _GTEQDPTIM(Oxidation (M))_ REV__ENSG00000130827|ENST00000369682|PLXNA3;REV__ENST00000493546.1_1_X:153697446-153699024:+|nuORF 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.1849 0 0 841.3802005749576 0 841.3802005749576 0 14.911356165197844 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.1849 + + 36 + NaN NaN 124690.4 NaN 1933 1688 3621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3625 27.706 NaN 102940 35 0 23815 0.327 -1 GFCMMCTM 8 25 543.165187190602 1084.3158214480038 2 543.1651000976562 MULTI HCD FTMS 0 0 0 3624 50862.00390625 0.6643453368174115 10 -0.15992164611816406 1 2 Carbamidomethyl (C),3 Oxidation (M) _GFC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TM(Oxidation (M))_ ENSG00000106346|ENST00000306177|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;nc|ENSG00000106346|Q9H9J4|USP42 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5669 0 0 919.2695853413617 0 919.2695853413617 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5669 + + 1 + NaN NaN 113717.5 NaN 1934 1689 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3626 27.711 NaN 92961 35 0 9206.7 0.261 -1 MHTWYAET 8 38 527.719043216952 NaN 0 527.7007446289062 PEAK HCD FTMS 0 0 0 3624 2126.528564453125 0.6016083250703881 2 -0.028139114379882812 2 Oxidation (M) _M(Oxidation (M))HTWYAET_ ENSG00000130479|ENST00000324096|MAP1S;ENST00000601097.1_1_19:17843916-17845234:+|nuORF;nc|ENSG00000130479|Q66K74-2|MAP1S 2.577480529830294 0.38822285293237185 1 DSHE{I|L} 5 -1 20.433 0 0 1.9397 0 0 201.01581875197775 268.1420992486938 469.15791800067154 0 0 0 0 0 0 0 0 0 DSHE{I|L} 1.9397 - 19 + NaN NaN 96654.9 NaN 1935 1689 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3627 27.714 NaN 72839 35 0 7148.1 0.261 + 25435 SESAQSKML 9 31 490.73979447424375 979.4650360152875 2 490.7394104003906 MULTI HCD FTMS 0 0 0 3624 36617.7890625 0.13066686790948043 17 -0.28427886962890625 3 Unmodified _SESAQSKML_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 5.731851221503515 0.3075653528928475 1 M{I|L} 2 7 25.969 0 0 2.6514 0 0 717.3278065412125 0 717.3278065412125 0 25.969100130080562 0 0 0 0.5 0 0 0 + M{I|L} 2.6514 + + 4 NaN NaN 106939.9 NaN 1936 1689 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3628 27.718 NaN 29684 35 0 5904 0.262 -1 CCGHRFCSPC 10 21 409.48115604880184 1225.4216387466056 3 409.48150634765625 MULTI HCD FTMS 0 0 0 3624 6065.24951171875 0.3425217196987219 -8 0.08945465087890625 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))GHRFCSPC_ ENSG00000214414|ENST00000398290|TRIM77 0.776531954647913 0.4711933975711956 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.44756 0 0 605.2280485139869 457.1352938287719 1062.3633423427589 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.44756 + + 3 + NaN NaN 89716.4 NaN 1937 1689 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3629 27.721 NaN 56283 35 0 11943 0.261 + 4198 EVAPPEYHR 9 25 549.2725355427444 1096.5305181522888 2 549.2721557617188 MULTI HCD FTMS 0 0 0 3624 15750.7216796875 0.611008830582379 -5 0.05445671081542969 5 Unmodified _EVAPPEYHR_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 8.155526934196011 0.2891920862272901 1 {NN|[MP]|[D{I|L}]|[EV]}AP[EP]Y[RH] 9 0 + 21.373 0 0 1.9491 1.9491 86.745 0 0 0 13.30075608481181 5.174837133936311 5.174837133936311 21.372724716820247 0 0 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}AP[EP]Y[RH] 1.9491 + + 16 + NaN NaN 84950.6 NaN 1938 1689 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3631 27.727 NaN 49138 35 0 7124.8 0.326 -1 0 31 513.2530017765168 1024.4914506198336 2 513.2525024414062 MULTI HCD FTMS 0 0 0 3630 6029.95458984375 0.030590786941078998 18 -0.29445457458496094 1 NaN NaN 1 D{I|L} 2 -1 18.583 0 0 1.8139 0 0 0 793.3649996393186 793.3649996393186 3.098943791441968 0 0 0 0 0 0 0 0 D{I|L} 1.8139 - 5 + NaN NaN 95374.5 NaN 1939 1690 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3633 27.735 NaN 2660900 35 0 256070 0.327 + 2547 DTAAQITQR 9 101 502.2620358040196 1002.5095186748392 2 502.2623291015625 MULTI HCD FTMS 0 0 0 3632 1755469.875 0.06189428151899177 19 -0.3168754577636719 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 228.36842504977758 2.46120000212446E-24 1 DTAAQ{I|L}TQR 9 0 + 138.04 0 0 13.77 13.77 94.389 0 0 0 92.61812787410983 16.489086832392502 16.489086832392502 9.208187539523749 0 2.9291746928241125 1.3979400086720375 1 1.9188265215345564 + + DTAAQ{I|L}TQR;DTAAQ{I|L}T[AG]R;DTAA[AG]{I|L}TQR;DTAA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;[TA]DAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA{I|L}QTQR;D{[QD]|[EN]|[WG]|[KD]|[RS]}Q{I|L}TQR 13.77;12.851;12.851;11.937;10.319;9.4001;8.6959;8.5449;8.4496;7.9102 +;-;-;-;+;-;-;-;-;- + 2963 + NaN NaN 505176.8 NaN 1940 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3634 27.739 NaN 34099 35 0 6246.1 0.261 + 12999 KYIQRQETI 9 15 589.8300967878218 1177.6456406424436 2 589.8298950195312 MULTI HCD FTMS 0 0 0 3632 33758.81640625 0.03888379822131485 43 -0.7727489471435547 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 7.101721422024254 0.29718071671418667 1 KY{I|L}Q 4 5 31.938 0 0 2.712 0 0 0 642.3230684869749 642.3230684869749 31.938200260161125 0 0 0 0 0 0 0 0 + KY{I|L}Q 2.712 + + 7 + NaN NaN 94156.7 NaN 1941 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3635 27.743 NaN 113950 35 0 12364 0.262 -1 NAMRADPAL 9 37 487.7403976790254 973.4662424248509 2 487.73956298828125 MULTI HCD FTMS 0 0 0 3632 31497.99609375 0.8489568242614953 -3 0.038364410400390625 3 Oxidation (M) _NAM(Oxidation (M))RADPAL_ ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6 9.38312468134398 0.279288223203164 1 TY[MT]{I|L} 5 -1 15.062 0 0 1.5472 0 0 346.1856861798844 0 346.1856861798844 0 14.973024840566465 0 0 0 0 0 0 0 TY[MT]{I|L} 1.5472 - 14 NaN NaN 90784.7 NaN 1942 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3636 27.746 NaN 47194 35 0 6449.2 0.261 -1 IERDEQCI 8 27 531.7478209160948 1061.4810888989896 2 531.747802734375 MULTI HCD FTMS 0 0 0 3632 16179.494140625 0.4911022519832848 -11 0.12442588806152344 4 Carbamidomethyl (C) _IERDEQC(Carbamidomethyl (C))I_ ENST00000397477.2_1_22:32667789-32668191:+|nuORF 4.3292370932331545 0.5355693454741696 1 {M(Oxidation (M))|F}{I|L} 2 -1 20.969 0 0 1.9755 0 0 783.350389549025 0 783.350389549025 0 20.969100130080562 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.9755 - 2 NaN NaN 86565.5 NaN 1943 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3637 27.75 NaN 34478 35 0 4726.6 0.261 -1 KMIFPLIM 8 24 512.7822730375051 1023.5499931418102 2 512.7821655273438 MULTI HCD FTMS 0 0 0 3632 17011.283203125 1 0 0 5 2 Oxidation (M) _KM(Oxidation (M))IFPLIM(Oxidation (M))_ ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-2|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11;nc|ENSG00000088836|Q8NBS3-5|SLC4A11 2.8892196856762586 0.5377058178582064 1 KV 2 -1 20.969 0 0 2.0487 0 0 0 793.3651217096311 793.3651217096311 8.20489028679166 0 0 0 0 0 0 0 0 KV 2.0487 - 2 + NaN NaN 107513.4 NaN 1944 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3638 27.753 NaN 38138 35 0 5780.6 0.261 + 22856 QYNPHVHQL 9 27 568.2860561064268 1134.5575592796536 2 568.2847900390625 MULTI HCD FTMS 0 0 0 3632 6724.751953125 0.06444275437353575 -8 0.10168838500976562 6 Unmodified _QYNPHVHQL_ ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5 3.944395688203298 0.32111559684428237 1 N{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3 7 7.4473 0 0 0.6564 0 0 729.391893455275 0 729.391893455275 0 0.45757490560674974 0 0 0 0 0 0 0 N{[WS]|[C(Carbamidomethyl (C)){I|L}]} 0.6564 - 5 NaN NaN 106467.5 NaN 1945 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3639 27.756 NaN 41043 35 0 4382.7 0.261 + 25916 SNYDLLRHL 9 19 565.7999734730731 NaN 0 565.81884765625 PEAK HCD FTMS 0 0 0 3632 3761.359130859375 0.6624639669080339 -3 0.038364410400390625 7 Unmodified _SNYDLLRHL_ ENSG00000144893|ENST00000687756|MED12L;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L 1.844237919475145 0.28630992268396543 1 A 1 9 6.9897 0 0 0.61878 0 0 264.0712471397024 791.4513643854124 1055.5226115251148 0 0 0 0 0 0 0 0 0 A 0.61878 - 5 + NaN NaN 89787.9 NaN 1946 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3640 27.76 NaN 101810 35 0 25737 0.264 + 25365 SEDSGRARGIR 11 41 401.87781050648954 NaN 0 401.8780212402344 PEAK HCD FTMS 0 0 0 3632 5174.82958984375 0.45295415466117417 5 -0.09273719787597656 8 Unmodified _SEDSGRARGIR_ KHDRBS2|p.G187A|1|0.14|ENSG00000112232|chr6:61901295-61901295|C/G|missense_variant 2.735195868890462 0.3343611804837492 1 AA 2 10 10.969 0 0 1.3682 0 0 159.3604050932541 497.28598962955317 656.6463947228073 0 0 0 0 0 0 0 0 0 AA 1.3682 - 8 + NaN NaN 92388.6 NaN 1947 1691 3632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3642 27.765 NaN 107680 35 0 19537 0.327 + 28822 TVDSHEPRL 9 31 527.2698245916239 1052.5250962500477 2 527.2698974609375 MULTI HCD FTMS 0 0 0 3641 59937.921875 0.8631029570405677 -4 0.06882667541503906 1 Unmodified _TVDSHEPRL_ ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-2|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2 21.536976647645854 0.1742816388551942 1 {[TV]|[{I|L}S]}DS{[YC]|[HE]}{I|L}[RP] 9 2 + 44.6 0 0 4.2374 4.2374 89.631 0 0 0 40.62014972766029 4.762036441594191 4.762036441594191 44.599549814380666 0 0.9247425010840047 1.6989700043360187 0 0 {[TV]|[{I|L}S]}DS{[YC]|[HE]}{I|L}[RP] 4.2374 - 13 + NaN NaN 92720.9 NaN 1948 1692 3641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3643 27.77 NaN 59656 35 0 19274 0.261 -1 0 18 611.1813848591221 610.174108392522 1 612.18017578125 MULTI HCD FTMS 0 0 0 3641 33697.6328125 0.5681320293759223 -199 2.5788116455078125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104602.9 NaN 1949 1692 3641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3644 27.774 NaN 32529 35 0 4880.6 0.261 -1 FCFPGHRGD 9 25 546.7396603408965 NaN 0 546.7521362304688 PEAK HCD FTMS 0 0 0 3641 2157.792236328125 0.2851918215675759 -17 0.20200347900390625 3 Carbamidomethyl (C) _FC(Carbamidomethyl (C))FPGHRGD_ ENST00000436521.1_3_6:35410881-35414311:+|nuORF 2.302733041254933 0.2840881193086663 1 HQ 2 -1 9.464 0 0 0.86709 0 0 346.15998183502955 477.1743258111938 823.3343076462234 0 0 0 0 0 0 0 0 0 HQ 0.86709 - 4 + NaN NaN 95604.3 NaN 1950 1692 3641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3645 27.777 NaN 17542 35 0 3484.9 0.261 + 35149 YVGSLTTPPLT 11 15 574.8133171647056 NaN 0 574.8131713867188 PEAK HCD FTMS 0 0 0 3641 1773.0264892578125 0.2999736264371733 4 -0.062274932861328125 4 Unmodified _YVGSLTTPPLT_ ENST00000568175.1_3_16:29630108-29634155:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93802.4 NaN 1951 1692 3641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3646 27.78 NaN 6147 35 0 3016.7 0.261 + -1 FFCSYFIYG 9 4 602.2639445305534 NaN 0 602.2633056640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _FFC(Carbamidomethyl (C))SYFIYG_ REV__ENST00000586818.1_1_19:28294655-28294964:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98611.4 NaN 1952 1692 3641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3648 27.786 NaN 464920 35 0 91480 0.327 + 25952 SPDENENEV 9 55 516.7094842005853 1031.4044154679705 2 516.7094116210938 MULTI HCD FTMS 0 0 0 3647 283909.40625 0.5096544934365533 10 -0.148040771484375 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 55.50274090549119 0.023872834264864425 1 NENEV 5 4 59.24 0 0 5.7436 0 0 428.1547108380875 0 428.1547108380875 0 49.06295947543775 0 0 0 1.2302046884880937 0 0.7742275032520141 0.4247425010840047 + NENEV 5.7436 + + 63 NaN NaN 160516.5 NaN 1953 1693 3647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3649 27.79 NaN 100500 35 0 24149 0.261 + 9502 HPYQPDPKM 9 17 556.763312782668 1111.5120726321359 2 556.7631225585938 MULTI HCD FTMS 0 0 0 3647 40256.1328125 0.6871451488335415 -3 0.05919456481933594 2 Unmodified _HPYQPDPKM_ ENSG00000141582|ENST00000269397|CBX4 10.073929032068715 0.27331982688540024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92151.2 NaN 1954 1693 3647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3650 27.794 NaN 81289 35 0 7667.4 0.261 + 8472 HADPHSIDTL 10 35 553.2672343400287 1104.5199157468574 2 553.2669677734375 MULTI HCD FTMS 0 0 0 3647 27292.134765625 0.005529465657263562 227 -4.449625015258789 3 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 10.073929032068715 0.4168838835836452 1 T{I|L} 2 -1 22.959 0 0 2.0786 0 0 872.3782874575869 0 872.3782874575869 0 5 0 0 0 0 0 0.5 0 T{I|L} 2.0786 + + 4 NaN NaN 89562.9 NaN 1955 1693 3647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3651 27.797 NaN 54200 35 0 8268.4 0.261 -1 WLSPWSTCP 9 26 559.7519692482435 1117.489385563287 2 559.7515869140625 MULTI HCD FTMS 0 0 0 3647 19163.365234375 0.16245801966469245 -11 0.15972328186035156 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WLSPWSTCP_ ENST00000373137.2_1_1:36793434-36793755:+|nuORF 3.944395688203298 0.32111559684428237 1 E{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CP]|[EA]} 6 -1 13.161 0 0 1.1777 0 0 396.2118397443375 0 396.2118397443375 0 13.160612466810592 0 0 0 0.5 0 0 0 E{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CP]|[EA]} 1.1777 - 7 NaN NaN 91272.1 NaN 1956 1693 3647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3653 27.803 NaN 167520 35 0 23293 0.327 -1 VAAKDVVM 8 46 424.7309755534907 847.4473981737814 2 424.7308044433594 MULTI HCD FTMS 0 0 0 3652 66645.125 0.7946713478001572 -4 0.07637596130371094 1 Oxidation (M) _VAAKDVVM(Oxidation (M))_ ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10 36.12702656103203 0.2806826090546818 1 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 8 -1 + 48.382 0 0 5.7092 5.7092 92.23 0 0 0 33.778128284054105 0.4845500650402812 0.4845500650402812 48.38222205381598 0 1.1549471895720984 1.2218487496163564 0 0 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 5.7092 - 41 + NaN NaN 119382.9 NaN 1957 1694 3652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3654 27.808 NaN 71496 35 0 8705.1 0.261 -1 QPMQPTPSM 9 34 524.7256144213683 1047.4366759095365 2 524.7252807617188 MULTI HCD FTMS 0 0 0 3652 24266.580078125 0.22952975888426622 21 -0.3497657775878906 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 8.745405648335112 0.2847203663274469 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99357.3 NaN 1958 1694 3652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3656 27.814 NaN 42218 35 0 4724.4 0.327 + 4185 ETTTTLATST 10 23 513.2530017765168 1024.4914506198336 2 513.2415161132812 MULTI HCD FTMS 0 0 0 3655 6540.236328125 0.0331795162097831 23 -0.4214134216308594 1 Unmodified _ETTTTLATST_ ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1;nc|ENSG00000179915|Q9ULB1|NRXN1 1.4819007175156935 0.4674597685733628 1 S 1 9 6.9897 0 0 0.68226 0 0 244.10932278955858 690.3275850885374 934.436907878096 0 0 0 0 0 0 0 0 0 + S 0.68226 + + 2 + NaN NaN 88434.9 NaN 1959 1695 3655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3657 27.818 NaN 51136 35 0 12365 0.261 -1 QPDEEPMDM 9 19 562.1993917742244 1122.3842306152487 2 562.199462890625 MULTI HCD FTMS 0 0 0 3655 10292.6123046875 0.7395093389090807 -28 0.3206005096435547 2 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91410.1 NaN 1960 1695 3655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3658 27.822 NaN 48441 35 0 9579.4 0.261 -1 PCVAEPVCM 9 33 482.7000621356682 NaN 0 482.7003173828125 PEAK HCD FTMS 0 0 0 3655 5168.9775390625 0.23214635488636304 14 -0.22106552124023438 3 Oxidation (M) _PCVAEPVCM(Oxidation (M))_ ENST00000531985.5_1_8:144766681-144771402:+|nuORF 2.302733041254933 0.2840881193086663 1 W 1 -1 6.9897 0 0 0.72554 0 0 202.97630245329907 571.3223971002561 774.2986995535553 0 0 0 0 0 0 0 0 0 W 0.72554 - 4 + NaN NaN 86232 NaN 1961 1695 3655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3660 27.828 NaN 109800 35 0 20853 0.326 -1 ASNVTNKTD 9 37 496.2381172794395 990.461681625679 2 496.2379455566406 MULTI HCD FTMS 0 0 0 3659 52188.88671875 0.7543964446737187 -3 0.041568756103515625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ASNVTNKTD_ ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC 14.405379775768559 0.2358970535022398 1 TD 2 -1 25.969 0 0 2.6219 0 0 756.3792207559271 0 756.3792207559271 0 10.484550065040281 0 0 0 0.5 0 0 0 TD 2.6219 + + 7 NaN NaN 98049.8 NaN 1962 1696 3659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3661 27.832 NaN 45214 35 0 10839 0.261 + -1 HIMLWNCECSG 11 20 455.8515687712104 1364.5328769138312 3 455.8518371582031 MULTI HCD FTMS 0 0 0 3659 11648.4033203125 1 0 0 2 Carbamidomethyl (C),Oxidation (M) _HIM(Oxidation (M))LWNC(Carbamidomethyl (C))ECSG_ REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF 0.40826533853263924 0.41713015341995335 1 G 1 -1 5.4846 0 0 0.40194 0 0 975.8169783316031 328.6727388971313 1304.4897172287344 0 0 0 0 0 0 0 0 0 G 0.40194 + + 1 + NaN NaN 90173.7 NaN 1963 1696 3659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3663 27.838 NaN 36507 35 0 8712 0.327 + -1 MYSIQPDDDEM 11 17 459.1720954917658 NaN 0 459.1719665527344 PEAK HCD FTMS 0 0 0 3662 23671.638671875 0.6113775573568169 20 -0.37325096130371094 1 2 Oxidation (M) _M(Oxidation (M))YSIQPDDDEM(Oxidation (M))_ REV__ENSG00000065150|ENST00000651721|IPO5;REV__nc|ENSG00000065150|O00410-2|IPO5;REV__nc|ENSG00000065150|O00410-3|IPO5 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79853.1 NaN 1964 1697 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3664 27.843 NaN 51472 35 0 7979.8 0.261 + -1 MCSYLSCCC 9 33 543.165187190602 1084.3158214480038 2 543.1650390625 MULTI HCD FTMS 0 0 0 3662 23249.072265625 0.3036729102036231 18 -0.3145713806152344 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))SYLSCCC_ REV__ENST00000409158.5_1_2:131904864-131905029:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84244.3 NaN 1965 1697 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3665 27.847 NaN 31508 35 0 5116.6 0.264 -1 MDDDPEDRMS 10 27 409.48115604880184 1225.4216387466056 3 409.4817810058594 MULTI HCD FTMS 0 0 0 3662 17707.634765625 1 0 0 3 Oxidation (M) _MDDDPEDRM(Oxidation (M))S_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84143.1 NaN 1966 1697 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3666 27.85 NaN 50520 35 0 10941 0.261 + 26209 SPSSDHKLL 9 29 492.261468114689 982.5083832961781 2 492.26165771484375 MULTI HCD FTMS 0 0 0 3662 11034.3173828125 0.7548797331718169 3 -0.052593231201171875 4 Unmodified _SPSSDHKLL_ REV__ENSG00000095777|ENST00000642920|MYO3A;REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107122.7 NaN 1967 1697 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3668 27.856 NaN 53030 35 0 16499 0.325 + 4199 EVAPPEYHR 9 22 549.2725355427444 1096.5305181522888 2 549.272216796875 MULTI HCD FTMS 0 0 0 3667 18402.916015625 0.7138939042084487 4 -0.06050872802734375 1 Unmodified _EVAPPEYHR_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 8.155526934196011 0.2891920862272901 1 {NN|[MP]|[D{I|L}]|[EV]}AP[EP]Y[RH] 9 0 + 23.134 0 0 2.1097 2.1097 86.963 0 0 0 14.181212380090217 6.9357497244931245 6.9357497244931245 23.13363730737706 0 0 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}AP[EP]Y[RH] 2.1097 + + 16 + NaN NaN 89690.4 NaN 1968 1698 3667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3669 27.86 NaN 16296 35 0 5604.9 0.261 -1 MARWRYRCWER 11 17 571.2725830078125 NaN 0 571.2725830078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MARWRYRC(Carbamidomethyl (C))WER_ ENST00000328599.4_1_8:125463328-125463391:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82680.9 NaN 1969 1698 3667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3671 27.867 NaN 864520 35 0 84919 0.327 + 2548 DTAAQITQR 9 60 502.2620358040196 1002.5095186748392 2 502.26202392578125 MULTI HCD FTMS 0 0 0 3670 504409.3125 0.01778444189404053 27 -0.48934364318847656 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 197.8061459832624 2.0030479297116643E-17 1 {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR 9 0 + 103.12 0 0 10.286 10.286 93.994 0 0 0 4.23541089559906 4.23541089559906 4.23541089559906 9.208187539523749 0 3.305462187404089 0 2.885151878060192 0.6421590589602533 + + {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}[RN]{I|L}TQ[VG];{[ES]|[DT]|[{I|L}C]}[RN]{I|L}T[AG][VG];{[RE]|[WV]}[NS]{I|L}TQ[VG];{[ES]|[DT]|[{I|L}C]}[RN]{I|L}VA{[QS]|[NT]};{[RE]|[WV]}[NS]{I|L}T[AG][VG];{[ES]|[DT]|[{I|L}C]}[RN][WR]R 10.286;9.3676;8.9451;8.031;6.0461;5.1276;4.5059;4.0384;3.5874;3.2866 +;-;-;-;-;-;-;-;-;- + 480 NaN NaN 224227.1 NaN 1970 1699 3670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3672 27.871 NaN 134200 35 0 26533 0.261 + 8269 GTSSVIVSR 9 40 453.25595586416557 904.4973587951312 2 453.2558288574219 MULTI HCD FTMS 0 0 0 3670 69521.4375 0.7667643294660267 -4 0.0528564453125 2 Unmodified _GTSSVIVSR_ ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11 38.61474834105838 0.07170385841135779 1 {[SA]|[TG]}SSV{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 54.359 0 0 6.0098 6.0098 92.921 0 0 0 47.36880000633434 7.147642715192504 7.147642715192504 54.35850004969453 0 1.4247425010840047 0 0.4247425010840047 0 + + {[SA]|[TG]}SSV{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 6.0098 + + 38 + NaN NaN 94492.3 NaN 1971 1699 3670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3673 27.875 NaN 144150 35 0 10225 0.261 + 23532 RNNEKTIT 8 50 488.2639937461037 NaN 0 488.2533264160156 PEAK HCD FTMS 0 0 0 3670 3626.335205078125 0.5720499438174034 5 -0.09250068664550781 3 Unmodified _RNNEKTIT_ REV__ENSG00000167257|ENST00000300650|RNF214;REV__ENST00000529869.1_1_11:117104988-117109857:+|nuORF 4.3292370932331545 0.38822285293237185 1 S 1 -1 6.9897 0 0 0.71725 0 0 200.10030086935745 684.3569177067986 884.457218576156 0 0 0 0 0 0 0 0 0 S 0.71725 - 45 + NaN NaN 107609 NaN 1972 1699 3670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3674 27.879 NaN 30242 35 0 4451 0.261 + 13000 KYIQRQETI 9 14 589.8300967878218 1177.6456406424436 2 589.8299560546875 MULTI HCD FTMS 0 0 0 3670 31461.345703125 0.03623754468669283 51 -0.9824123382568359 4 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 2.9952420565917617 0.3283108881486655 1 KY{I|L} 3 6 26.198 0 0 2.2246 0 0 0 770.3801973932249 770.3801973932249 26.197887582883936 0 0 0 0 0 0 0 0 + KY{I|L} 2.2246 + + 3 + NaN NaN 107065.3 NaN 1973 1699 3670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3675 27.882 NaN 60193 35 0 6879.2 0.261 + -1 QGNVQQEML 9 24 531.7478209160948 1061.4810888989896 2 531.74755859375 MULTI HCD FTMS 0 0 0 3670 26420.125 0.8019399600758266 -3 0.03904533386230469 5 Oxidation (M) _QGNVQQEM(Oxidation (M))L_ REV__MAP2K5|p.V89L|1|0.32|ENSG00000137764|chr15:67580766-67580766|G/T|missense_variant 10.073929032068715 0.27331982688540024 1 E{M(Oxidation (M))|F}{I|L} 3 -1 33.94 0 0 3.1974 0 0 654.3073597638687 0 654.3073597638687 0 28.455612550363796 0 0 0 0.5 0 0.4247425010840047 0 E{M(Oxidation (M))|F}{I|L} 3.1974 + + 19 NaN NaN 95785.8 NaN 1974 1699 3670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3676 27.885 NaN 67295 35 0 14734 0.261 -1 HLHHWSCF 8 27 562.2461850160803 NaN 0 562.2462158203125 PEAK HCD FTMS 0 0 0 3670 4711.943359375 0.5141891341055536 1 -0.024354934692382812 6 Carbamidomethyl (C) _HLHHWSC(Carbamidomethyl (C))F_ NEB|p.Y4571H|1|0.28|ENSG00000183091|chr2:151562688-151562688|A/G|missense_variant 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85908.6 NaN 1975 1699 3670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3678 27.891 NaN 206980 35 0 16387 0.327 + 22857 QYNPHVHQL 9 59 568.2860561064268 1134.5575592796536 2 568.2855834960938 MULTI HCD FTMS 0 0 0 3677 103251.234375 0.9894482327337695 1 -0.010942459106445312 1 Unmodified _QYNPHVHQL_ ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5 43.85829265575387 0.04763305254408404 1 [YQ]NPHVH[Q{I|L}] 9 0 + 38.126 0 0 3.3605 3.3605 84.825 0 0 0 12.352357840093909 9.449689600073448 9.449689600073448 9.208187539523756 0 0.6237125054200234 0 0 0.3807196863200844 + + [YQ]NPHVH[Q{I|L}];[YQ]GGPHVH[Q{I|L}];{[QN]|[E{I|L}]|[KN]}[RP]HPN{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[QN]|[E{I|L}]|[KN]}[RP]HPGG{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3.3605;2.5489;1.1743;0.3627 +;-;-;- + 147 + NaN NaN 112915.1 NaN 1976 1700 3677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3679 27.896 NaN 113430 35 0 8166.8 0.261 + 35070 YTSVRVHAPT 10 37 565.8002203528229 NaN 0 565.8193359375 PEAK HCD FTMS 0 0 0 3677 2040.226318359375 0.5618711550556165 -4 0.0634002685546875 2 Unmodified _YTSVRVHAPT_ REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1 8.745405648335112 0.33269943387702366 1 AEK{I|L}H 5 -1 27.959 0 0 2.4751 0 0 264.07235035616355 284.17292200260005 548.2452723587636 0 0 0 0 0 0 0 0 0 AEK{I|L}H 2.4751 - 38 + NaN NaN 109029.4 NaN 1977 1700 3677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3681 27.902 NaN 75874 35 0 10956 0.327 + 28823 TVDSHEPRL 9 32 527.2698245916239 1052.5250962500477 2 527.269775390625 MULTI HCD FTMS 0 0 0 3680 29997.08203125 0.43195642080742985 5 -0.08905982971191406 1 Unmodified _TVDSHEPRL_ ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-2|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2 20.41453444215458 0.18397929046831515 1 {I|L}SDS 4 7 54.24 0 0 5.1533 0 0 0 647.3262423150999 647.3262423150999 43.75569708000178 0 0 0 0 0.3807196863200844 2 0 0 {I|L}SDS 5.1533 - 12 + NaN NaN 90111.4 NaN 1978 1701 3680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3682 27.906 NaN 37162 35 0 6125.1 0.261 -1 FCFPGHRGD 9 24 546.7396603408965 NaN 0 546.7515258789062 PEAK HCD FTMS 0 0 0 3680 1894.581787109375 0.2504037329812286 -9 0.13661766052246094 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))FPGHRGD_ ENST00000436521.1_3_6:35410881-35414311:+|nuORF 2.302733041254933 0.2840881193086663 1 QHQ 3 -1 13.812 0 0 1.2655 0 0 218.09875319956797 477.1750887506469 695.2738419502149 0 0 0 0 0 0 0 0 0 QHQ 1.2655 - 12 + NaN NaN 85930.8 NaN 1979 1701 3680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3683 27.91 NaN 11815 35 0 1944.1 0.261 + 2609 DULGMEEKNI 10 12 600.2294311523438 NaN 0 600.2294311523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _DULGMEEKNI_ ENSG00000138018|ENST00000260585|SELENOI 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77525 NaN 1980 1701 3680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3685 27.916 NaN 151120 35 0 22976 0.327 + 25953 SPDENENEV 9 43 516.7094842005853 1031.4044154679705 2 516.7095336914062 MULTI HCD FTMS 0 0 0 3684 84633.9453125 0.1519289941658252 19 -0.3925762176513672 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 14.405379775768559 0.2358970535022398 1 NENEV 5 4 41.938 0 0 4.0661 0 0 428.1544666974625 0 428.1544666974625 0 37.33410649039925 0 0 0 0.4247425010840047 0 0 0.4247425010840047 + NENEV 4.0661 + + 16 NaN NaN 113686.6 NaN 1981 1702 3684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3686 27.921 NaN 177790 35 0 32565 0.261 + 1912 DAAKDSILR 9 37 494.77488692870133 987.5352209242027 2 494.775146484375 MULTI HCD FTMS 0 0 0 3684 106945.3828125 0.587348473289714 -4 0.06050872802734375 2 Unmodified _DAAKDSILR_ ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F 26.020703789607367 0.13554323117744113 1 DAAK 4 5 51.291 0 0 5.1939 0 0 0 599.3157267378566 599.3157267378566 31.827417515368438 0 0 0 0 0.7134679910804405 1.2218487496163564 0 0 + DAAK 5.1939 + + 33 + NaN NaN 107878.9 NaN 1982 1702 3684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3687 27.925 NaN 63964 35 0 8904.8 0.262 -1 SEDCGEEQTR 10 52 404.1588046452509 NaN 0 404.1490478515625 PEAK HCD FTMS 0 0 0 3684 1643.3111572265625 0.2905411600111572 8 -0.1355743408203125 3 Carbamidomethyl (C) _SEDC(Carbamidomethyl (C))GEEQTR_ ENSG00000173714|ENST00000311378|WFIKKN2;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 1.5922808571145555 0.3388215173004697 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90435 NaN 1983 1702 3684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3688 27.928 NaN 12939 35 0 3815.7 0.262 + 1668 CDHDGGPRLFS 11 13 602.2640147881697 NaN 0 602.2633056640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _CDHDGGPRLFS_ REV__ENSG00000204843|ENST00000628224|DCTN1;REV__ENST00000466110.5_1_2:74595806-74598423:-|nuORF;REV__nc|ENSG00000204843|Q14203-2|DCTN1;REV__nc|ENSG00000204843|Q14203-3|DCTN1;REV__nc|ENSG00000204843|Q14203-4|DCTN1;REV__nc|ENSG00000204843|Q14203-5|DCTN1;REV__nc|ENSG00000204843|Q14203-6|DCTN1 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85272.2 NaN 1984 1702 3684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3690 27.934 NaN 159090 35 0 13256 0.327 -1 CLSMTEHALG 10 49 559.7519692482435 1117.489385563287 2 559.7520141601562 MULTI HCD FTMS 0 0 0 3689 97330.453125 0.8251219174903117 -1 0.017908096313476562 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSMTEHALG_ ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENST00000556069.5_1_14:55251199-55255659:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A 32.30548876998284 0.21217886106551395 1 {M(Oxidation (M))|F}A{M(Oxidation (M))|F}QVEHQ{I|L} 9 -1 + 85.416 0 0 7.6436 7.6436 89.525 0 0 0 7.940228147639203 7.940228147639203 7.940228147639203 7.940228147639203 0 3.004432191740108 0 0.805462187404089 0.3494850021680094 {M(Oxidation (M))|F}A{M(Oxidation (M))|F}QVEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L};{M(Oxidation (M))|F}SMQVEHQ{I|L};{M(Oxidation (M))|F}A{M(Oxidation (M))|F}[AG]VEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEH[AG]{I|L};{M(Oxidation (M))|F}SM[AG]VEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[AG]VEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[AG]VEH[AG]{I|L};[WD][YQ][YK]C{I|L};[WD]{[WS]|[C(Carbamidomethyl (C)){I|L}]}E[WP]{I|L} 7.6436;6.933;6.8365;6.8196;6.109;6.0125;5.8357;5.0156;2.0576;0.16861 -;-;-;-;-;-;-;-;-;- 251 + NaN NaN 108040.1 NaN 1985 1703 3689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3691 27.939 NaN 136710 35 0 11180 0.262 + 22858 QYNPHVHQL 9 40 568.2860561064268 1134.5575592796536 2 568.2860107421875 MULTI HCD FTMS 0 0 0 3689 61360.0625 0.5880085189156717 4 -0.06707954406738281 2 Unmodified _QYNPHVHQL_ ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5 30.636539890814138 0.10832830463492794 1 [YQ]NPHVH[Q{I|L}] 9 0 + 30.71 0 0 2.7067 2.7067 84.393 0 0 0 17.52197890818877 6.174727504281176 6.174727504281176 9.208187539523752 0 0.3054621874040891 0 0 0.3252574989159953 + + [YQ]NPHVH[Q{I|L}];[YQ]GGPHVH[Q{I|L}];{[QN]|[E{I|L}]|[KN]}[RP]HPN{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[QN]|[E{I|L}]|[KN]}[RP]HPGG{[WS]|[C(Carbamidomethyl (C)){I|L}]} 2.7067;1.8951;1.1615;0.3499 +;-;-;- + 105 + NaN NaN 112607 NaN 1986 1703 3689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3692 27.943 NaN 149120 35 0 18904 0.263 -1 VAAKDVVM 8 42 424.7309755534907 847.4473981737814 2 424.7308044433594 MULTI HCD FTMS 0 0 0 3689 63445.765625 0.7565224325324866 5 -0.08721923828125 3 Oxidation (M) _VAAKDVVM(Oxidation (M))_ ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10 29.081581746732265 0.3711897268585781 1 VAA[WR]V 6 -1 46.956 0 0 5.5408 0 0 0 162.02291284732658 162.02291284732658 32.976146931408294 0 0 0 0 1.305462187404089 1.3010299956639813 0 0 VAA[WR]V 5.5408 - 23 + NaN NaN 99733.8 NaN 1987 1703 3689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3693 27.947 NaN 73644 35 0 7135.2 0.261 + 8473 HADPHSIDTL 10 28 553.2672343400287 1104.5199157468574 2 553.2673950195312 MULTI HCD FTMS 0 0 0 3689 36115.421875 0.0073170892152754075 237 -4.717966079711914 4 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 13.90604991867851 0.3810395177745597 1 T{I|L} 2 -1 25.445 0 0 2.3037 0 0 872.3782947031367 0 872.3782947031367 0 2.2577249674798594 0 0 0 0.4247425010840047 0 0.5 0 T{I|L} 2.3037 + + 9 NaN NaN 101667.4 NaN 1988 1703 3689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3694 27.95 NaN 34253 35 0 6170 0.261 + -1 FDSLSMWF 8 16 524.7256144213683 1047.4366759095365 2 524.72509765625 MULTI HCD FTMS 0 0 0 3689 17977.70703125 0.1700453358854028 30 -0.54010009765625 5 Oxidation (M) _FDSLSM(Oxidation (M))WF_ REV__ENSG00000203697|ENST00000366872|CAPN8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99830.1 NaN 1989 1703 3689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3695 27.953 NaN 245940 35 0 131020 0.263 + 27870 TDSPLSDLLRS 11 41 401.87781050648954 NaN 0 401.87786865234375 PEAK HCD FTMS 0 0 0 3689 5134.6318359375 0.44943563500293876 17 -0.35148048400878906 6 Unmodified _TDSPLSDLLRS_ REV__ENSG00000149131|ENST00000278407|SERPING1;REV__nc|ENSG00000149131|P05155-2|SERPING1;REV__nc|ENSG00000149131|P05155-3|SERPING1 4.897010918128616 0.3282287337590871 1 D 1 -1 11.237 0 0 1.4016 0 0 199.40242348789258 484.2885836236938 683.6910071115864 0 0 0 0 0 0 0 0.4247425010840047 0 D 1.4016 + + 1 + NaN NaN 134178 NaN 1990 1703 3689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3697 27.96 NaN 62256 35 0 7837.8 0.327 -1 EDSSGMIGTI 10 29 513.226813451103 NaN 0 513.2413330078125 PEAK HCD FTMS 0 0 0 3696 3366.342529296875 0.5624109846465519 7 -0.10614967346191406 1 Oxidation (M) _EDSSGM(Oxidation (M))IGTI_ tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 3.5964929083625545 0.337106189561315 1 S 1 -1 10.485 0 0 1.0234 0 0 244.0599978965434 690.3254573347791 934.3854552313226 0 0 0 0 0 0 0 0.5 0 S 1.0234 + + 1 + NaN NaN 105392.9 NaN 1991 1704 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3698 27.964 NaN 55051 35 0 12709 0.261 + -1 LCHTEPIWG 9 15 556.763312782668 1111.5120726321359 2 556.7630004882812 MULTI HCD FTMS 0 0 0 3696 22445.9296875 0.3831369438207731 8 -0.12652206420898438 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))HTEPIWG_ REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.2788 0 0 787.0575571065484 174.3613222711547 961.4188793777031 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.2788 - 2 + NaN NaN 95260.3 NaN 1992 1704 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3699 27.968 NaN 121680 35 0 34733 0.264 + 7964 GEEGPSAAP 9 38 407.68243662756527 813.3503203219306 2 407.6822814941406 MULTI HCD FTMS 0 0 0 3696 74749.890625 0.04996931019188243 -10 0.15593338012695312 3 Unmodified _GEEGPSAAP_ ENST00000500447.1_1_11:567068-567254:-|nuORF 23.1484247019978 0.1603590852062899 1 AP 2 7 30.217 0 0 3.7151 0 0 627.2494374005875 0 627.2494374005875 0 23.226825097560422 0 0 0 0.9247425010840047 0 0 0 + AP 3.7151 + + 16 NaN NaN 117005.6 NaN 1993 1704 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3700 27.972 NaN 45958 35 0 10102 0.261 -1 QPDEEPMDM 9 24 562.1993917742244 1122.3842306152487 2 562.1993408203125 MULTI HCD FTMS 0 0 0 3696 6467.7333984375 0.4646973098889996 -19 0.2992057800292969 4 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 5.731851221503515 0.3075653528928475 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90979.9 NaN 1994 1704 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3701 27.975 NaN 41390 35 0 9418 0.261 -1 0 19 480.2805239327137 479.27324746611373 1 480.27972412109375 MULTI HCD FTMS 0 0 0 3696 8096.7822265625 0.3525611750314159 13 -0.25251197814941406 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87591.9 NaN 1995 1704 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3703 27.981 NaN 38346 35 0 6244.3 0.327 + 9365 HPSWMGRL 8 23 492.2479974665763 NaN 0 492.2615661621094 PEAK HCD FTMS 0 0 0 3702 3653.36962890625 1 0 0 1 Unmodified _HPSWMGRL_ SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|75|3|anti-sense 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88808.2 NaN 1996 1705 3702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3704 27.985 NaN 20948 35 0 3511.7 0.261 -1 PMEGWVAWM 9 23 569.7384093994244 1137.4622658656488 2 569.7384033203125 MULTI HCD FTMS 0 0 0 3702 1876.892822265625 0.2617180284373536 1 -0.010240554809570312 2 2 Oxidation (M) _PM(Oxidation (M))EGWVAWM(Oxidation (M))_ ENSG00000177464|ENST00000323040|GPR4 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83990.7 NaN 1997 1705 3702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3706 27.991 NaN 798600 35 0 220370 0.327 + 9366 HPTDDTTTL 9 33 500.7327982630624 999.4510435929249 2 500.7327575683594 MULTI HCD FTMS 0 0 0 3705 397347.5 0.22077432212070808 -7 0.12435722351074219 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 46.020951573049366 0.037705236580089195 1 TTT{I|L} 4 5 51.428 0 0 5.1456 0 0 565.2162342755875 0 565.2162342755875 0 40.19077524932108 0 0 0 1.3252574989159953 0 0.9247425010840047 0 + TTT{I|L} 5.1456 + + 38 NaN NaN 196607.9 NaN 1998 1706 3705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3707 27.995 NaN 39632 35 0 8933.4 0.261 + 12127 KKKKKKKKKSF 11 22 469.328528036998 NaN 0 469.32867431640625 PEAK HCD FTMS 0 0 0 3705 16807.0859375 0.8463412520778086 23 -0.4071521759033203 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88222.1 NaN 1999 1706 3705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3709 28.001 NaN 72042 35 0 13045 0.327 + 8270 GTSSVIVSR 9 30 453.25595586416557 904.4973587951312 2 453.25579833984375 MULTI HCD FTMS 0 0 0 3708 45905.89453125 0.5063042955461334 4 -0.06414413452148438 1 Unmodified _GTSSVIVSR_ ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11 22.65808497894818 0.16459551161911185 1 {[SA]|[TG]}S[VS]{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 37.381 0 0 4.1328 4.1328 89.243 0 0 0 37.38106231821711 7.147642715192511 7.147642715192511 37.38106231821711 0 1.4247425010840047 0 0 0 + + {[SA]|[TG]}S[VS]{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 4.1328 + + 29 + NaN NaN 93845.9 NaN 2000 1707 3708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3710 28.005 NaN 65747 35 0 13830 0.261 + 27574 TADTHALAD 9 29 457.71423180681825 913.4139106804365 2 457.7140808105469 MULTI HCD FTMS 0 0 0 3708 22621.271484375 0.5081751854153551 -3 0.04200553894042969 2 Unmodified _TADTHALAD_ REV__ENST00000509093.5_1_4:83956215-83956278:+|nuORF 6.723162845929126 0.3000504726104499 1 AV{[CP]|[EA]} 4 -1 28.188 0 0 3.086 0 0 525.2167498911772 0 525.2167498911772 0 17.730012720637376 0 0 0 1.3494850021680094 0 0 0 AV{[CP]|[EA]} 3.086 - 16 + NaN NaN 84025.1 NaN 2001 1707 3708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3711 28.009 NaN 27186 35 0 3751.2 0.261 + 13001 KYIQRQETI 9 21 589.8300967878218 1177.6456406424436 2 589.8299560546875 MULTI HCD FTMS 0 0 0 3708 23464.1484375 0.027026279662749546 59 -1.1282081604003906 3 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 5.296884461304476 0.3108627248283497 1 KY 2 7 20.969 0 0 1.7806 0 0 0 883.4619845025999 883.4619845025999 20.969100130080562 0 0 0 0 0 0 0 0 + KY 1.7806 + + 1 + NaN NaN 84083.7 NaN 2002 1707 3708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3712 28.012 NaN 74640 35 0 6762 0.262 + 796 ATDSLSTAPI 10 34 488.2533530050766 974.4921530769532 2 488.25311279296875 MULTI HCD FTMS 0 0 0 3708 27846.806640625 0.42445467609827503 5 -0.08451652526855469 4 Unmodified _ATDSLSTAPI_ nc|ENSG00000163564|Q6K0P9-5|PYHIN1;nc|ENSG00000163564|Q6K0P9-6|PYHIN1 1.6526216038709556 0.46655611578153744 1 TTY 3 8 6.9112 0 0 0.70921 0 0 149.0981233912094 457.2081698053344 606.3062931965438 0 0 0 0 0 0 0 0 0 TTY 0.70921 - 6 + NaN NaN 84549.3 NaN 2003 1707 3708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3713 28.016 NaN 51896 35 0 9267.4 0.261 + 2043 DEFASFPHL 9 31 531.7478209160948 1061.4810888989896 2 531.747802734375 MULTI HCD FTMS 0 0 0 3708 13415.0205078125 0.40719114729591743 5 -0.08451652526855469 5 Unmodified _DEFASFPHL_ ENSG00000169783|ENST00000355300|LINGO1;LINGO1|p.Q164Rfs*33|1|0.05|ENSG00000169783|chr15:77615418-77615418|A/-|frameshift_variant;nc|ENSG00000169783|Q96FE5-2|LINGO1 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.4465 0 0 783.3514881818375 0 783.3514881818375 0 12.870156338638594 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.4465 - 12 NaN NaN 88867.7 NaN 2004 1707 3708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3715 28.021 NaN 90945 35 0 16811 0.327 + -1 HPCCHPDM 8 36 527.1883669774569 1052.3621810217137 2 527.1882934570312 MULTI HCD FTMS 0 0 0 3714 38815.82421875 0.477034136800099 -4 0.062145233154296875 1 2 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))C(Carbamidomethyl (C))HPDM_ REV__ENST00000266542.8_1_12:7249524-7252328:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101760 NaN 2005 1708 3714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3716 28.026 NaN 37487 35 0 3775.6 0.261 -1 SVMEDDILM 9 39 542.7311782869702 1083.4478036407404 2 542.7316284179688 MULTI HCD FTMS 0 0 0 3714 7041.65234375 0.5346846209540047 -12 0.19369125366210938 2 2 Oxidation (M) _SVM(Oxidation (M))EDDILM(Oxidation (M))_ ENSG00000104973|ENST00000312865|MED25;ENST00000594998.1_1_19:50340075-50340198:+|nuORF;nc|ENSG00000104973|Q71SY5-5|MED25;nc|ENSG00000104973|Q71SY5-6|MED25 3.944395688203298 0.32111559684428237 1 Y 1 -1 2.2185 0 0 0.20476 0 0 370.04010207999664 547.3142183893186 917.3543204693153 0 0 0 0 0 0 0 0 0 Y 0.20476 - 2 + NaN NaN 93553.6 NaN 2006 1708 3714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3717 28.029 NaN 19756 35 0 3509.7 0.261 + 10266 IKAQEEDEDE 10 18 603.2615356445312 NaN 0 603.2615356445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IKAQEEDEDE_ ENSG00000204262|ENST00000374866|COL5A2 0.4007161486938917 0.3398413315442166 1 K 1 9 5.4846 0 0 0.45571 0 0 743.4310585431655 328.96113001041255 1072.392188553578 0 0 0 0 0 0 0 0 0 + K 0.45571 + + 1 + NaN NaN 78875.9 NaN 2007 1708 3714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3719 28.035 NaN 55048 35 0 6227 0.326 + 28979 TYASRLYRT 9 25 565.8002214209481 NaN 0 565.8194580078125 PEAK HCD FTMS 0 0 0 3718 5242.6865234375 1 0 0 1 Unmodified _TYASRLYRT_ ENSG00000186895|ENST00000334134|FGF3;FGF3|p.V137E|1|0.4|ENSG00000186895|chr11:69810615-69810615|A/T|missense_variant 4.3292370932331545 0.2742679634796037 1 AEK{I|L} 4 7 18.928 0 0 1.6756 0 0 264.07003405107736 421.23139368228755 685.3014277333649 0 0 0 0 0 0 0 0 0 AEK{I|L} 1.6756 - 12 + NaN NaN 95628.3 NaN 2008 1709 3718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3720 28.039 NaN 78995 35 0 5230.1 0.261 + 22587 QTFENQVNR 9 50 568.277206577508 1134.5398602218158 2 568.277587890625 MULTI HCD FTMS 0 0 0 3718 12439.5634765625 0.6048425243922023 2 -0.0304412841796875 2 Unmodified _QTFENQVNR_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 9.38312468134398 0.279288223203164 1 [QT][{M(Oxidation (M))|F}E]NQVG{[NV]|[RG]} 10 2 + 24.895 0 0 2.1942 2.1942 79.528 0 0 0 4.259687322722812 1.76091259055681 1.76091259055681 1.76091259055681 0 0 0 0 0 [QT][{M(Oxidation (M))|F}E]NQVG{[NV]|[RG]};[QT][{M(Oxidation (M))|F}E]NQV[RN];[Y{I|L}][DN]NQVG{[NV]|[RG]};[Y{I|L}][DN]NQV[RN];[QT][{M(Oxidation (M))|F}E]N[AG]VG{[NV]|[RG]};[QT][{M(Oxidation (M))|F}E]GGQVG{[NV]|[RG]};[QT][{M(Oxidation (M))|F}E]N[AG]V[RN];[QT][{M(Oxidation (M))|F}E]GGQV[RN];[Y{I|L}][DN]N[AG]VG{[NV]|[RG]};[Y{I|L}][DN]GGQVG{[NV]|[RG]} 2.1942;2.039;1.7737;1.6185;1.3865;1.3865;1.2274;1.2274;0.96592;0.96592 -;+;-;-;-;-;-;-;-;- + 132 + NaN NaN 90857.8 NaN 2009 1709 3718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3721 28.043 NaN 39489 35 0 6552.2 0.261 -1 EGRMQQAEQ 9 32 546.7396603408965 NaN 0 546.7521362304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _EGRM(Oxidation (M))QQAEQ_ ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2 3.5964929083625545 0.27781873954207675 1 D 1 -1 6.9897 0 0 0.6404 0 0 608.2192671155836 365.1934908502563 973.41275796584 0 0 0 0 0 0 0 0 0 D 0.6404 - 3 + NaN NaN 100857.1 NaN 2010 1709 3718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3722 28.046 NaN 17000 35 0 2853.4 0.261 -1 KKGYQRWKM 9 20 620.8362000157599 1239.6578470983197 2 620.83642578125 MULTI HCD FTMS 0 0 0 3718 4213.48193359375 0.19478897932619152 -4 0.0540924072265625 4 Oxidation (M) _KKGYQRWKM(Oxidation (M))_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|12|1|sense 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106922.8 NaN 2011 1709 3718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3724 28.051 NaN 195290 35 0 36359 0.327 + 1913 DAAKDSILR 9 41 494.77488692870133 987.5352209242027 2 494.7748107910156 MULTI HCD FTMS 0 0 0 3723 120364.6875 0.661047850612354 4 -0.08098602294921875 1 Unmodified _DAAKDSILR_ ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F 32.037481411007896 0.10189719824197178 1 DAAK 4 5 55.222 0 0 5.5919 0 0 0 599.316968671158 599.316968671158 30.00508444608478 0 0 0 0 0.805462187404089 1.5228787452803376 0 0 + DAAK 5.5919 + + 65 + NaN NaN 98584.5 NaN 2012 1710 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3725 28.056 NaN 71731 35 0 10152 0.261 + 25349 SDYDSSSSKG 10 36 516.7094842005853 1031.4044154679705 2 516.709716796875 MULTI HCD FTMS 0 0 0 3723 32158.51953125 0.05772874593290699 27 -0.5161418914794922 2 Unmodified _SDYDSSSSKG_ ENSG00000111653|ENST00000341550|ING4;ENST00000484795.5_1_12:6761826-6762560:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;nc|ENSG00000111653|Q9UNL4-8|ING4;nc|ENSG00000111653|Q9UNL4|ING4 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93727 NaN 2013 1710 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3726 28.06 NaN 56039 35 0 4434.2 0.261 + 22588 QTFENQVNR 9 29 568.277206577508 1134.5398602218158 2 568.2860107421875 MULTI HCD FTMS 0 0 0 3723 19001.6875 0.9239093201996903 3 -0.05754280090332031 3 Unmodified _QTFENQVNR_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 10.073929032068715 0.27331982688540024 1 V[RN] 3 6 10.458 0 0 0.92175 0 0 747.3175529481815 0 747.3175529481815 0 4.9730248405664685 0 0 0 0 0 0 0 + V[RN] 0.92175 + + 10 + NaN NaN 85503.1 NaN 2014 1710 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3728 28.065 NaN 104290 35 0 9175.3 0.327 -1 AMNMLHELQ 9 36 559.7519692482435 1117.489385563287 2 559.7518310546875 MULTI HCD FTMS 0 0 0 3727 71899.0234375 0.6095261881524388 7 -0.1699066162109375 1 2 Oxidation (M) _AM(Oxidation (M))NM(Oxidation (M))LHELQ_ nc|ENSG00000226807|Q6ZUA9|MROH5 19.256988751693697 0.19398022840297344 1 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L} 9 -1 + 65.543 0 0 5.8652 5.8652 87.749 0 0 0 7.147642715192504 8.200054037348664 7.147642715192504 9.208187539523749 0 2.56295299324845 0 0.3252574989159953 0.3807196863200844 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[AG]VEHQ{I|L};[KG][NP]EVQ{M(Oxidation (M))|F}{[CP]|[EA]};[KG][NP]EV[AG]{M(Oxidation (M))|F}{[CP]|[EA]} 5.8652;5.0412;4.3917;3.5716 -;-;-;- 101 + NaN NaN 96372.7 NaN 2015 1711 3727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3729 28.069 NaN 117340 35 0 21278 0.263 + -1 TPSMGCCP 8 47 426.6557437876511 851.2969346421022 2 426.6556701660156 MULTI HCD FTMS 0 0 0 3727 36663.6171875 0.7329349646240965 -5 0.07429313659667969 2 Carbamidomethyl (C) _TPSMGC(Carbamidomethyl (C))CP_ REV__ENSG00000204480|ENST00000376101|PRAMEF19 5.230669730166228 0.5342319408533849 1 TTW 3 -1 12.479 0 0 1.4659 0 0 101.99628878763754 358.1051119440063 460.1014007316438 0 0 0 0 0 0 0 0.3807196863200844 0 TTW 1.4659 - 28 + NaN NaN 96825.6 NaN 2016 1711 3727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3730 28.073 NaN 39000 35 0 5209.3 0.261 + 12303 KLQHMKLHG 9 28 546.3095998542747 1090.6046467753492 2 546.81103515625 MULTI HCD FTMS 0 0 0 3727 13363.8740234375 0.7912010481965995 -3 0.04400444030761719 3 Unmodified _KLQHMKLHG_ tr|U7T5Z1|U7T5Z1_FUSNU5-oxoprolinasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pxpAPE=3SV=1 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F} 1 8 3.0989 0 0 0.28415 0 0 763.534469628668 177.01943384342033 940.5539034720883 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.28415 + + 2 + NaN NaN 89023.2 NaN 2017 1711 3727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3731 28.077 NaN 52739 35 0 6856.8 0.263 -1 DCSGGVCDQGR 11 41 404.1588046452509 NaN 0 404.1489562988281 PEAK HCD FTMS 0 0 0 3727 1245.6932373046875 0.22024140503943476 16 -0.30673980712890625 4 2 Carbamidomethyl (C) _DC(Carbamidomethyl (C))SGGVC(Carbamidomethyl (C))DQGR_ ENST00000565875.5_1_15:66857042-66858257:-|nuORF 1.0135738785822086 0.339244926269168 1 D 1 -1 2.4743 0 0 0.30686 0 0 332.08276324382365 356.1682528131469 688.2510160569706 0 0 0 0 0 0 0 0 0 D 0.30686 + + 4 + NaN NaN 98700.5 NaN 2018 1711 3727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3732 28.08 NaN 12374 35 0 3580.4 0.261 -1 FQWGAWKMAF 10 13 644.3038078794585 1286.593062825717 2 644.302978515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _FQWGAWKM(Oxidation (M))AF_ ENST00000300648.6_1_12:120565361-120565607:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89730.4 NaN 2019 1711 3727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3734 28.085 NaN 70461 35 0 8058.1 0.327 + 30801 VPTTEEVDCI 10 27 553.2553067083674 NaN 0 553.2671508789062 PEAK HCD FTMS 0 0 0 3733 1481.86328125 0.7804541352787923 1 -0.02361297607421875 1 Unmodified _VPTTEEVDCI_ ENSG00000101292|ENST00000678254|PROKR2 3.5964929083625545 0.337106189561315 1 T 1 9 6.9897 0 0 0.63284 0 0 149.0824742234792 851.3440766298963 1000.4265508533756 0 0 0 0 0 0 0 0 0 + T 0.63284 + + 5 + NaN NaN 95400.3 NaN 2020 1712 3733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3735 28.09 NaN 55290 35 0 5024.7 0.261 -1 HPMTFWTS 8 32 511.72408892779816 1021.4336249223963 2 511.72509765625 MULTI HCD FTMS 0 0 0 3733 21635.873046875 0.981009315436313 -3 0.05081367492675781 2 Oxidation (M) _HPM(Oxidation (M))TFWTS_ chr2:218881467-218882161|129|14.76|0.12|6.95|+|2|None,WNT10A|1 9.347437153973935 0.5250182646323369 1 HP{[ES]|[DT]|[{I|L}C]}D 5 -1 26.95 0 0 2.6385 0 0 0 453.1973971002563 453.1973971002563 26.95046257204389 0 0 0 0 0.5 0 0.4247425010840047 0 HP{[ES]|[DT]|[{I|L}C]}D 2.6385 - 7 + NaN NaN 88981 NaN 2021 1712 3733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3736 28.094 NaN 72663 35 0 12361 0.261 -1 PHSGMMPPI 9 36 491.727503058796 981.440453184392 2 491.72747802734375 MULTI HCD FTMS 0 0 0 3733 13801.29296875 0.9126472317210776 -9 0.1515960693359375 3 Oxidation (M) _PHSGMM(Oxidation (M))PPI_ ENSG00000130749|ENST00000253048|ZC3H4 4.75600775471527 0.31496297302216103 1 R 1 -1 13.495 0 0 1.375 0 0 807.3283601441561 0 807.3283601441561 0 3.802112417116062 0 0 0 0 0 0 0 R 1.375 - 6 + NaN NaN 110143.9 NaN 2022 1712 3733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3737 28.097 NaN 27700 35 0 4857.1 0.261 -1 0 21 471.59546846582555 2352.9409599961277 5 471.7952880859375 MULTI HCD FTMS 0 0 0 3733 6270.40087890625 0.6146151386856143 -9 0.1515960693359375 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89828.8 NaN 2023 1712 3733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3738 28.1 NaN 44788 35 0 5343.5 0.261 + 9503 HPYQPDPKM 9 30 556.763312782668 1111.5120726321359 2 556.7626953125 MULTI HCD FTMS 0 0 0 3733 5486.68798828125 0.0936540787926864 16 -0.3026866912841797 5 Unmodified _HPYQPDPKM_ ENSG00000141582|ENST00000269397|CBX4 6.2057823575117 0.30397260197431997 1 A 1 9 0.71334 0 0 0.064177 0 0 599.2877206807672 438.1630037897094 1037.4507244704766 0 0 0 0 0 0 0 0 0 A 0.064177 - 1 + NaN NaN 107971.1 NaN 2024 1712 3733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3739 28.103 NaN 190480 35 0 93981 0.264 + 12563 KSWCRRDPR 9 53 401.87782436850244 NaN 0 401.8777770996094 PEAK HCD FTMS 0 0 0 3733 2475.3076171875 0.3399929592753298 -1 0.020372390747070312 6 Unmodified _KSWCRRDPR_ ENST00000285379.9_1_8:86376191-86377596:+|nuORF 1.844237919475145 0.28630992268396543 1 D 1 8 6.9897 0 0 0.87182 0 0 199.40199775868615 484.29181848697505 683.6938162456612 0 0 0 0 0 0 0 0 0 + D 0.87182 + + 2 + NaN NaN 105447.2 NaN 2025 1712 3733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3741 28.109 NaN 1260900 35 0 492930 0.327 + 3021 EADPGSAAP 9 52 407.68243662756527 813.3503203219306 2 407.6825256347656 MULTI HCD FTMS 0 0 0 3740 1381761.5 0.9236892312135173 -1 0.02361297607421875 1 Unmodified _EADPGSAAP_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 74.42276476219924 0.007657080072768255 1 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 6 5 49.13 0 0 6.0404 0 0 182.0695515363297 0 182.0695515363297 0 26.025684359364405 0 0 0 1.4247425010840047 0 1.274227503252014 0 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 6.0404 - 157 NaN NaN 273754.5 NaN 2026 1713 3740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3742 28.113 NaN 225000 35 0 95067 0.261 + 7927 GCCRTEAP 8 49 418.6734506183598 835.3323483035197 2 418.67340087890625 MULTI HCD FTMS 0 0 0 3740 152135.171875 0.8740235329643996 -3 0.05754280090332031 2 Unmodified _GCCRTEAP_ REV__ENST00000482346.1_1_2:233347818-233348165:-|nuORF 5.230669730166228 0.5342319408533849 1 EP 2 -1 21.454 0 0 2.5683 0 0 591.2303944318375 0 591.2303944318375 0 7.6413688858352184 0 0 0 0 0 0.5 0 EP 2.5683 - 34 NaN NaN 112865.9 NaN 2027 1713 3740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3743 28.117 NaN 252170 35 0 29245 0.261 + 12382 KPESNEQVL 9 39 522.2718531343755 1042.529153335551 2 522.2716064453125 MULTI HCD FTMS 0 0 0 3740 87043.8671875 0.3500363494929921 -5 0.08798980712890625 3 Unmodified _KPESNEQVL_ ENSG00000165832|ENST00000298746|TRUB1 13.042465956692817 0.2476723265019929 1 QV{I|L} 3 6 35.445 0 0 3.3999 0 0 684.3092518537125 0 684.3092518537125 0 28.455612550363796 0 0 0 0.5 0 0 0.4247425010840047 + QV{I|L} 3.3999 + + 6 NaN NaN 122445.8 NaN 2028 1713 3740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3744 28.12 NaN 26731 35 0 4589.5 0.261 -1 QPEGEEPEM 9 18 531.2080496027777 1060.4015462723553 2 531.2078247070312 MULTI HCD FTMS 0 0 0 3740 10931.2548828125 0.7633255957000217 1 -0.023443222045898438 4 Oxidation (M) _QPEGEEPEM(Oxidation (M))_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89515.9 NaN 2029 1713 3740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3745 28.124 NaN 30193 35 0 4932.6 0.261 -1 TLTCLTSSGM 10 21 543.7424209738326 NaN 0 543.7435302734375 PEAK HCD FTMS 0 0 0 3740 5688.32373046875 0.5066161057456681 -5 0.08798980712890625 5 Carbamidomethyl (C),Oxidation (M) _TLTC(Carbamidomethyl (C))LTSSGM(Oxidation (M))_ ENST00000313835.13_1_1:145803380-145804287:-|nuORF 3.5964929083625545 0.337106189561315 1 G 1 -1 6.9897 0 0 0.64393 0 0 560.7182881373152 464.7021578424438 1025.420445979759 0 0 0 0 0 0 0 0 0 G 0.64393 + + 2 + NaN NaN 90613.5 NaN 2030 1713 3740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3746 28.127 NaN 13606 35 0 2867.6 0.261 + -1 CFWLVKCQF 9 15 644.3038078794585 1286.593062825717 2 644.3028564453125 MULTI HCD FTMS 0 0 0 3740 5597.37939453125 0.3872377174139591 -9 0.15013504028320312 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWLVKC(Carbamidomethyl (C))QF_ REV__nc|ENSG00000184347|O75094-4|SLIT3 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104098.7 NaN 2031 1713 3740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3748 28.132 NaN 2731600 35 0 776480 0.326 + 9367 HPTDDTTTL 9 52 500.7327982630624 999.4510435929249 2 500.73297119140625 MULTI HCD FTMS 0 0 0 3747 1799217 0.999681421232181 1 -0.020254135131835938 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 68.08070601005525 0.009709267492204555 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}DTTT{I|L} 9 0 + 54.869 0 0 5.4899 5.4899 90.039 0 0 0 0.6728747786933553 33.44212497064703 0.6728747786933553 19.48970004336018 0 1.6747425010840047 0 0.9247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}DTTT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}DTVC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}D[R{M(Oxidation (M))|F}]{I|L};{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}T]D[R{M(Oxidation (M))|F}]{I|L} 5.4899;3.5399;1.8413;1.0385 +;-;-;- + 301 NaN NaN 491616.6 NaN 2032 1714 3747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3749 28.137 NaN 148220 35 0 10879 0.261 + -1 EGRLAEPAM 9 55 495.23966200149835 988.4647710697967 2 495.23052978515625 MULTI HCD FTMS 0 0 0 3747 2032.076171875 0.04886930464894447 15 -0.2654304504394531 2 Oxidation (M) _EGRLAEPAM(Oxidation (M))_ REV__ENSG00000198001|ENST00000613694|IRAK4;REV__nc|ENSG00000198001|Q9NWZ3-2|IRAK4 11.640296217721598 0.25978676193971967 1 SPSDAD 6 -1 51.776 0 0 5.238 0 0 0 413.21528040103755 413.21528040103755 35.57827834592722 0 0 0 0 0 1.5228787452803376 0.3807196863200844 0 SPSDAD 5.238 - 114 + NaN NaN 110874.4 NaN 2033 1714 3747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3750 28.141 NaN 94931 35 0 12263 0.261 + 9048 HPESGEVTV 9 35 477.73014809995 953.4457432667 2 477.7298889160156 MULTI HCD FTMS 0 0 0 3747 33966.9765625 0.4756267924452344 -3 0.0674285888671875 3 Unmodified _HPESGEVTV_ ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant 10.823927491677226 0.26684000660059787 1 VTV 3 6 33.94 0 0 3.5597 0 0 636.2506581037125 0 636.2506581037125 0 33.94016261540408 0 0 0 0.5 0 0.4247425010840047 0 + VTV 3.5597 + + 5 NaN NaN 111811.8 NaN 2034 1714 3747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3751 28.144 NaN 32269 35 0 5735.2 0.261 + -1 KIIKLCMW 8 21 546.3095998542747 1090.6046467753492 2 546.8114013671875 MULTI HCD FTMS 0 0 0 3747 16890.6171875 1 0 0 4 Carbamidomethyl (C) _KIIKLC(Carbamidomethyl (C))MW_ REV__ENSG00000133115|ENST00000379631|STOML3;REV__nc|ENSG00000133115|Q8TAV4-2|STOML3 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88394.3 NaN 2035 1714 3747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3752 28.147 NaN 47482 35 0 8037.1 0.261 -1 QPDEEPMDM 9 28 562.1993917742244 1122.3842306152487 2 562.198974609375 MULTI HCD FTMS 0 0 0 3747 6151.40234375 0.4419693801658691 -9 0.1519622802734375 5 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 9.38312468134398 0.279288223203164 1 C{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}D]|MM} 5 -1 11.082 0 0 0.98739 0 0 495.22313124824376 0 495.22313124824376 0 11.082268588648247 0 0 0 1 0 0 0 C{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}D]|MM} 0.98739 - 3 NaN NaN 91605.5 NaN 2036 1714 3747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3754 28.153 NaN 1072700 35 0 354540 0.326 + 29550 VAAAESHPL 9 67 447.7372304358252 893.4599079384504 2 447.73699951171875 MULTI HCD FTMS 0 0 0 3753 367705.59375 0.678624797550104 -1 0.020254135131835938 1 Unmodified _VAAAESHPL_ ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF 89.42679046578446 0.004540987215715461 1 VAAAESH[{I|L}P] 9 0 + 87.049 0 0 9.7429 9.7429 97.711 0 0 0 71.94373700210946 5.6424927368725974 5.6424927368725974 33.21501508154121 0 1.8494850021680094 1.6989700043360187 0.7742275032520141 0 + + VAAAESH[{I|L}P];{[VA]|[{I|L}G]}AATDH[{I|L}P];VNVESH[{I|L}P];[Q{I|L}]ATDH[{I|L}P];{[VA]|[{I|L}G]}V[SG]DH[{I|L}P];V{I|L}[DN]SH[{I|L}P];{[VA]|[{I|L}G]}[DG]S[HV][{I|L}P];{[NV]|[RG]}VTDH[{I|L}P] 9.7429;6.0254;4.0481;2.8391;2.2735;2.2195;2.1386;1.3336 +;-;-;-;-;-;-;- + 371 + NaN NaN 239709.7 NaN 2037 1715 3753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3755 28.157 NaN 152770 35 0 28086 0.261 -1 FMCGHQGCG 9 35 527.1883669774569 1052.3621810217137 2 527.18798828125 MULTI HCD FTMS 0 0 0 3753 80103.3203125 0.984444334989464 3 -0.08222389221191406 2 2 Carbamidomethyl (C) _FMC(Carbamidomethyl (C))GHQGC(Carbamidomethyl (C))G_ ENST00000573951.1_1_16:3315704-3317325:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122696 NaN 2038 1715 3753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3756 28.161 NaN 472710 35 0 41874 0.261 + 9208 HPLSDHEATL 10 59 560.2751367728551 1118.5357206125102 2 560.2747192382812 MULTI HCD FTMS 0 0 0 3753 154332.75 0.02632880427852079 -7 0.13168716430664062 3 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 123.45060196383646 3.270871365774944E-05 1 EAT{I|L} 4 6 49.412 0 0 4.4176 0 0 686.3157155355875 0 686.3157155355875 0 7.716525140920609 0 0 0 0.6989700043360187 0 1.3494850021680094 0 + EAT{I|L} 4.4176 + + 367 NaN NaN 156204.5 NaN 2039 1715 3753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3757 28.164 NaN 73319 35 0 13887 0.262 + 28068 TGTEAHVAE 9 29 457.71423180681825 913.4139106804365 2 457.71429443359375 MULTI HCD FTMS 0 0 0 3753 26850.947265625 0.6031926682243212 5 -0.13257408142089844 4 Unmodified _TGTEAHVAE_ ENSG00000170677|ENST00000397942|SOCS6 14.838274106304384 0.23215694253501695 1 HAV{[CP]|[EA]} 5 5 21.299 0 0 2.3318 0 0 388.1586170880875 0 388.1586170880875 0 15.814243664528576 0 0 0 0.9247425010840047 0 0 0 HAV{[CP]|[EA]} 2.3318 - 23 NaN NaN 100220.5 NaN 2040 1715 3753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3758 28.168 NaN 21658 35 0 3253.9 0.261 + 13002 KYIQRQETI 9 17 589.8300967878218 1177.6456406424436 2 589.8294067382812 MULTI HCD FTMS 0 0 0 3753 13381.6533203125 0.015413144267649354 67 -1.2183208465576172 5 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 5.731851221503515 0.3075653528928475 1 KY{I|L} 3 6 26.198 0 0 2.2246 0 0 0 770.3809908502561 770.3809908502561 26.197887582883936 0 0 0 0 0 0 0 0 + KY{I|L} 2.2246 + + 3 + NaN NaN 82333 NaN 2041 1715 3753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3759 28.171 NaN 12343 35 0 2816.8 0.261 + 22780 QYKMILTHC 9 10 568.7824960892926 1135.5504392453852 2 568.7876586914062 MULTI HCD FTMS 0 0 0 3753 2563.872314453125 0.10086077046348915 -6 0.11812400817871094 6 Unmodified _QYKMILTHC_ REV__nc|ENSG00000216937|Q96M83-5|CCDC7 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83115.7 NaN 2042 1715 3753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3761 28.181 NaN 97834 35 0 7123.4 0.327 + 9182 HPLEGTHEL 9 40 516.7586128708678 1031.5026728085354 2 516.759521484375 MULTI HCD FTMS 0 0 0 3760 23873.220703125 0.7249193834784348 -1 0.0286865234375 1 Unmodified _HPLEGTHEL_ ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant 26.88365393820708 0.12808753336095696 1 {I|L}C{I|L} 3 7 28.06 0 0 2.7203 0 0 684.310838767775 0 684.310838767775 0 21.070006276765483 0 0 0 0.4247425010840047 0 0 0 {I|L}C{I|L} 2.7203 - 17 NaN NaN 104242 NaN 2043 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3762 28.186 NaN 49511 35 0 5692.9 0.261 + 28950 TYAEKLHRL 9 41 565.8195784450728 1129.6246039569455 2 565.8196411132812 MULTI HCD FTMS 0 0 0 3760 10278.486328125 0.15429776169386622 17 -0.2925071716308594 2 Unmodified _TYAEKLHRL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 13.042465956692817 0.2476723265019929 1 [YT]{[CP]|[EA]}K{I|L} 6 3 28.161 0 0 2.4929 0 0 0 421.2314547174438 421.2314547174438 28.16061246681059 0 0 0 0 0 2 0 0 + [YT]{[CP]|[EA]}K{I|L} 2.4929 + + 6 + NaN NaN 102665.8 NaN 2044 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3763 28.189 NaN 63835 35 0 8791.5 0.261 + 29722 VDKGNIIKP 9 33 492.2979369055956 982.5813208779912 2 492.2980651855469 MULTI HCD FTMS 0 0 0 3760 10824.4892578125 0.9374183194058926 1 -0.029993057250976562 3 Unmodified _VDKGNIIKP_ REV__ENSG00000110422|ENST00000303296|HIPK3;REV__nc|ENSG00000110422|Q9H422-2|HIPK3 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99708.6 NaN 2045 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3764 28.193 NaN 99975 35 0 28102 0.261 + -1 RRHCTLSSTQ 10 46 415.87538924178125 1244.6043383255437 3 415.87542724609375 MULTI HCD FTMS 0 0 0 3760 7155.8017578125 0.42012719964241085 7 -0.14978408813476562 4 Carbamidomethyl (C) _RRHC(Carbamidomethyl (C))TLSSTQ_ REV__ENSG00000160336|ENST00000684525|ZNF761;REV__ENSG00000198346|ENST00000396403|ZNF813 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 98882.4 NaN 2046 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3765 28.196 NaN 33259 35 0 5227.4 0.261 -1 DAYMFCII 8 18 524.7256501078688 NaN 0 524.7254638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _DAYM(Oxidation (M))FC(Carbamidomethyl (C))II_ ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 5.760428011301431 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 8.4949 0 0 0.81101 0 0 349.1334158389812 548.2487276666624 897.3821435056436 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.81101 + + 2 + NaN NaN 101519.5 NaN 2047 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3766 28.199 NaN 30080 35 0 5059.2 0.261 + 1888 CYKCEYRK 8 24 546.7517425359481 1091.488932138696 2 546.7520141601562 MULTI HCD FTMS 0 0 0 3760 7131.21875 0.19223899067348282 17 -0.2925071716308594 6 Unmodified _CYKCEYRK_ REV__ENSG00000181896|ENST00000592502|ZNF101;REV__nc|ENSG00000181896|Q8IZC7-2|ZNF101 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110607.5 NaN 2048 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3767 28.203 NaN 14437 35 0 4211.6 0.261 -1 EADRTAIHEVM 11 12 644.3038078794585 1286.593062825717 2 644.8055419921875 MULTI HCD FTMS 0 0 0 3760 2616.91015625 0.332144962927826 -2 0.04894065856933594 7 Oxidation (M) _EADRTAIHEVM(Oxidation (M))_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94344.7 NaN 2049 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3768 28.206 NaN 46438 35 0 5868.9 0.264 -1 LKMDMMYPQ 9 31 400.1810302734375 NaN 0 400.1810302734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LKMDMMYPQ_ ENST00000399147.8_1_16:12027566-12027753:-|nuORF 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85901.5 NaN 2050 1716 3760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3770 28.211 NaN 113670 35 0 23729 0.327 -1 SPCCMSAP 8 47 426.6557437876511 851.2969346421022 2 426.6555480957031 MULTI HCD FTMS 0 0 0 3769 37349.18359375 0.7466399841572926 1 -0.0235443115234375 1 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))CMSAP_ ENST00000372731.8_1_9:131395621-131395717:+|nuORF 5.230669730166228 0.5342319408533849 1 T 1 -1 8.8515 0 0 1.0398 0 0 101.997602187998 645.2280977838499 747.2256999718479 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.0398 - 14 + NaN NaN 104099.1 NaN 2051 1717 3769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3771 28.216 NaN 34427 35 0 3689.4 0.261 + -1 ECIYVMAH 8 25 511.72408892779816 1021.4336249223963 2 511.7236633300781 MULTI HCD FTMS 0 0 0 3769 14259.28125 0.6465414040547254 2 -0.050487518310546875 2 Carbamidomethyl (C) _EC(Carbamidomethyl (C))IYVMAH_ REV__ENST00000261207.9_2_12:80167805-80167889:-|nuORF 5.760428011301431 0.5334459684533844 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 90034.4 NaN 2052 1717 3769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3772 28.22 NaN 35436 35 0 4899.5 0.261 + 12128 KKKKKKKKKSF 11 25 469.328528036998 NaN 0 469.3283996582031 PEAK HCD FTMS 0 0 0 3769 9973.51171875 0.5022283117399912 34 -0.6541690826416016 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86843.9 NaN 2053 1717 3769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3773 28.223 NaN 15822 35 0 3366.7 0.261 + -1 MFRLKRTCI 9 15 620.8362000157599 1239.6578470983197 2 620.8350219726562 MULTI HCD FTMS 0 0 0 3769 8781.0966796875 0.40594949416148474 4 -0.09708213806152344 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))FRLKRTC(Carbamidomethyl (C))I_ REV__GRM1|p.P698L|1|0.26|ENSG00000152822|chr6:146399132-146399132|C/T|missense_variant 0.5247636613948944 0.34703895399870666 1 D 1 -1 6.9897 0 0 0.56384 0 0 733.8312612602323 387.7782076471313 1121.6094689073636 0 0 0 0 0 0 0 0 0 D 0.56384 - 1 + NaN NaN 83859.1 NaN 2054 1717 3769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3774 28.226 NaN 27765 35 0 3388.6 0.261 + 3708 ELWIFWWG 8 18 568.7824960892926 1135.5504392453852 2 568.7808227539062 MULTI HCD FTMS 0 0 0 3769 13349.7841796875 0.5251702708805849 -4 0.10237693786621094 5 Unmodified _ELWIFWWG_ ENSG00000108510|ENST00000397786|MED13;ENSG00000123066|ENST00000281928|MED13L;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 2.577480529830294 0.5381683276125971 1 Q 1 8 5.4846 0 0 0.48299 0 0 149.10792525207222 855.3585299127561 1004.4664551648284 0 0 0 0 0 0 0 0 0 Q 0.48299 - 3 + NaN NaN 100447.2 NaN 2055 1717 3769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3775 28.229 NaN 19817 35 0 3944.7 0.261 + 3619 ELAGEEEELNA 11 16 602.2727014237586 NaN 0 602.27294921875 PEAK HCD FTMS 0 0 0 3769 7006.2138671875 1 0 0 6 Unmodified _ELAGEEEELNA_ ENSG00000182472|ENST00000328867|CAPN12 1.1933415558491238 0.338734977139133 1 R 1 11 2.4743 0 0 0.20575 0 0 878.1104835586515 165.30231653385002 1043.4128000925016 0 0 0 0 0 0 0 0 0 R 0.20575 - 1 + NaN NaN 92009.7 NaN 2056 1717 3769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3777 28.235 NaN 1504900 35 0 209490 0.327 + 3016 EADPGQYRC 9 57 519.7191112988619 1037.4236696645237 2 519.7190551757812 MULTI HCD FTMS 0 0 0 3776 488323 0.7357683952975494 -8 0.18346405029296875 1 Unmodified _EADPGQYRC_ ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-2|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG 92.65332237495696 0.004456439685314431 1 [PG]QDAEYRC 9 6 + 39.632 0 0 3.8202 3.8202 86.53 0 0 0 4.137342758552698 12.447727244830496 4.137342758552698 13.4556125503638 0 0.3807196863200844 0 1.3494850021680094 0.4247425010840047 [PG]QDAEYRC;[PG][AG]DAEYRC;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}[YK]C;[PG][AG]D{NN|[MP]|[D{I|L}]|[EV]}P[C(Carbamidomethyl (C))H];[WE][YN]SW[PG] 3.8202;2.5232;2.2207;0.9296;0.75391;0.072551 -;-;-;-;-;- 403 NaN NaN 312778.9 NaN 2057 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3778 28.239 NaN 350640 35 0 38792 0.261 + 3391 EEVHDLERKY 10 51 439.88612091880964 1316.636533356629 3 439.8858947753906 MULTI HCD FTMS 0 0 0 3776 128553.75 0.30142997002568045 -6 0.1495342254638672 2 Unmodified _EEVHDLERKY_ ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-2|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4 27.128809495255545 0.25735828607737204 1 EEVHD{I|L}E[RK]Y 10 0 + 44.213 0 0 3.358 3.358 88.727 0 0 0 7.697953115119063 12.174617874626037 7.697953115119063 44.21327198560853 0 0.8807196863200843 0 0 0 + + EEVHD{I|L}E[RK]Y 3.358 + + 86 + NaN NaN 140910.8 NaN 2058 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3779 28.243 NaN 244130 35 0 74968 0.261 + 28069 TGTEAHVAE 9 33 457.71423180681825 913.4139106804365 2 458.2241516113281 MULTI HCD FTMS 0 0 0 3776 7419.52001953125 0.388610055080454 9 -0.13683319091796875 3 Unmodified _TGTEAHVAE_ ENSG00000170677|ENST00000397942|SOCS6 6.723162845929126 0.3000504726104499 1 TV 2 7 16.326 0 0 1.7873 0 0 117.04343512090891 593.2355440729124 710.2789791938213 0 0 0 0 0 0.7742275032520141 0 0 0 TV 1.7873 - 11 + NaN NaN 119935.6 NaN 2059 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3780 28.246 NaN 53780 35 0 6336.6 0.261 + 26571 SVSEVHPSRL 10 30 555.798870607034 1109.583188280868 2 555.7987060546875 MULTI HCD FTMS 0 0 0 3776 27896.396484375 0.6620434108650737 2 -0.050350189208984375 4 Unmodified _SVSEVHPSRL_ ENSG00000115415|ENST00000361099|STAT1 6.630372943996041 0.44020808660041416 1 VH 2 8 15.217 0 0 1.3714 0 0 402.17432705215543 468.2579439752563 870.4322710274117 0 0 0 0 0 0.4247425010840047 0 0 0 + VH 1.3714 + + 8 + NaN NaN 84196.6 NaN 2060 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3781 28.25 NaN 36949 35 0 4568.4 0.261 + -1 CPTCSPMGPM 10 28 585.2076220383515 1168.4006911435029 2 585.2079467773438 MULTI HCD FTMS 0 0 0 3776 18910.318359375 0.7283686630231494 1 -0.026943206787109375 5 2 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))PTC(Carbamidomethyl (C))SPM(Oxidation (M))GPM(Oxidation (M))_ REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF 1.6526216038709556 0.46655611578153744 1 S{[CP]|[EA]} 3 -1 10.458 0 0 0.89503 0 0 863.2961292951187 0 863.2961292951187 0 10.45757490560675 0 0 0 0 0 0 0 S{[CP]|[EA]} 0.89503 - 1 NaN NaN 85692.1 NaN 2061 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3782 28.253 NaN 70157 35 0 6437.9 0.261 + 9506 HPYSMAMRI 9 30 553.2672343400287 1104.5199157468574 2 553.266845703125 MULTI HCD FTMS 0 0 0 3776 28989.57421875 0.005873371813448922 252 -5.1305694580078125 6 Unmodified _HPYSMAMRI_ REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF 4.3292370932331545 0.3181982124262546 1 T{I|L} 2 -1 22.959 0 0 2.0786 0 0 872.3774694236016 0 872.3774694236016 0 15.969100130080562 0 0 0 0 0 0.5 0 T{I|L} 2.0786 - 5 NaN NaN 88453.8 NaN 2062 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3783 28.256 NaN 108960 35 0 16946 0.261 + 25242 SASQTRDVL 9 37 488.7568879417087 975.4992229502175 2 488.7568664550781 MULTI HCD FTMS 0 0 0 3776 18447.560546875 0.6008155567076215 -3 0.08222389221191406 7 Unmodified _SASQTRDVL_ ENSG00000176390|ENST00000324238|CRLF3;nc|ENSG00000176390|Q8IUI8-2|CRLF3 12.240655878213236 0.2545997876781172 1 {[SA]|[TG]}NT 4 6 6.8226 0 0 0.69939 0 0 0 599.3164766900999 599.3164766900999 6.822581265925437 0 0 0 0 0 0 0 0 {[SA]|[TG]}NT 0.69939 - 5 + NaN NaN 99179.7 NaN 2063 1718 3776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3785 28.262 NaN 667220 35 0 266890 0.327 + 3022 EADPGSAAP 9 47 407.68243662756527 813.3503203219306 2 407.6824951171875 MULTI HCD FTMS 0 0 0 3784 689820.8125 0.4611360614499745 5 -0.07879257202148438 1 Unmodified _EADPGSAAP_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 74.42276476219924 0.007657080072768255 1 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 6 5 47 0 0 5.7786 0 0 182.06921584297032 0 182.06921584297032 0 27.70303756120384 0 0 0 1.4247425010840047 0 1.274227503252014 0 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 5.7786 - 119 NaN NaN 180477.6 NaN 2064 1719 3784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3786 28.266 NaN 513750 35 0 44503 0.261 + 12383 KPESNEQVL 9 71 522.2718531343755 1042.529153335551 2 522.2716064453125 MULTI HCD FTMS 0 0 0 3784 218548.234375 0.8788652046441897 1 -0.023406982421875 2 Unmodified _KPESNEQVL_ ENSG00000165832|ENST00000298746|TRUB1 24.990960013464015 0.14443998892849796 1 TTYDTV{I|L} 7 7 41.05 0 0 3.9376 0 0 231.13263137031407 0 231.13263137031407 0 22.41721358325307 0 0 0 0.5 0 0 0 TTYDTV{I|L} 3.9376 - 407 NaN NaN 174972 NaN 2065 1719 3784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3787 28.27 NaN 114010 35 0 40238 0.262 + 127 AEASCCRP 8 37 418.6734506183598 835.3323483035197 2 418.6734313964844 MULTI HCD FTMS 0 0 0 3784 70804.4609375 0.40677487221088127 3 -0.05960655212402344 3 Unmodified _AEASCCRP_ ENSG00000188581|ENST00000306271|KRTAP1-1;ENSG00000204887|ENST00000377747|KRTAP1-4;ENSG00000221880|ENST00000344363|KRTAP1-3 4.3292370932331545 0.5355693454741696 1 A 1 7 10.797 0 0 1.2925 0 0 133.07408526277317 628.2000216119749 761.274106874748 0 0 0 0 0 0.3807196863200844 0 0 0 + A 1.2925 + + 8 + NaN NaN 92286.9 NaN 2066 1719 3784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3788 28.273 NaN 256890 35 0 35032 0.261 + 28701 TSNDHLSCL 9 53 495.22118281062365 988.4278126880473 2 495.2300109863281 MULTI HCD FTMS 0 0 0 3784 12947.7099609375 0.75366945071786 20 -0.37589454650878906 4 Unmodified _TSNDHLSCL_ REV__ENST00000359015.4_1_6:137019770-137026263:-|nuORF 3.944395688203298 0.32111559684428237 1 AEH 3 -1 19.737 0 0 1.9968 0 0 102.03557746737813 546.2308443658811 648.2664218332593 0 0 0 0 0 0 0 0.805462187404089 0 AEH 1.9968 - 47 + NaN NaN 144879.1 NaN 2067 1719 3784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3789 28.276 NaN 37521 35 0 5326.7 0.261 + 14446 LESEQKQQF 9 28 568.7824960892926 1135.5504392453852 2 568.781494140625 MULTI HCD FTMS 0 0 0 3784 22813.005859375 0.897446153848518 -2 0.050487518310546875 5 Unmodified _LESEQKQQF_ ENSG00000163840|ENST00000296161|DTX3L 10.799506525563784 0.2670509983294061 1 Q{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8466 0 0 842.4096546857437 0 842.4096546857437 0 20.969100130080562 0 0 0 0 0 0 0 + Q{M(Oxidation (M))|F} 1.8466 + + 2 NaN NaN 86190.3 NaN 2068 1719 3784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3790 28.28 NaN 69090 35 0 8625.5 0.262 + 1996 DAVGTAVSSR 10 43 481.74884087264365 961.4831288120873 2 481.74847412109375 MULTI HCD FTMS 0 0 0 3784 18308.23828125 0.4306287448752163 -5 0.12942123413085938 6 Unmodified _DAVGTAVSSR_ ENST00000020945.3_2_8:49832997-49833910:-|nuORF 37.771325159832564 0.16474695691370878 1 WVGTAVS 7 4 62.74 0 0 6.5253 0 0 0 258.12082849674067 258.12082849674067 62.73972931694338 0 0 0 0 1.7302046884880937 0 0.4247425010840047 0 WVGTAVS 6.5253 - 59 + NaN NaN 97399.8 NaN 2069 1719 3784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3792 28.285 NaN 867620 35 0 242660 0.326 + 9368 HPTDDTTTL 9 40 500.7327982630624 999.4510435929249 2 500.7328186035156 MULTI HCD FTMS 0 0 0 3791 502189.84375 0.2790268526411027 7 -0.08648300170898438 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 46.020951573049366 0.037705236580089195 1 TTT{I|L} 4 5 50.477 0 0 5.0505 0 0 565.2137318341812 0 565.2137318341812 0 39.24024714504206 0 0 0 1.3807196863200843 0 0.9247425010840047 0 + TTT{I|L} 5.0505 + + 54 NaN NaN 208435.3 NaN 2070 1720 3791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3793 28.289 NaN 907740 35 0 343970 0.261 + 29551 VAAAESHPL 9 61 447.7372304358252 893.4599079384504 2 447.7372131347656 MULTI HCD FTMS 0 0 0 3791 330859.78125 0.6106234332157285 4 -0.055385589599609375 2 Unmodified _VAAAESHPL_ ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF 97.07464715276575 0.004340583992084827 1 VAAAESH[{I|L}P] 9 0 + 87.846 0 0 9.8321 9.8321 97.228 0 0 0 73.32055337844736 5.6424927368725974 5.6424927368725974 24.821292774059067 0 2.2302046884880937 1.6989700043360187 0.7742275032520141 0 + + VAAAESH[{I|L}P];{[VA]|[{I|L}G]}AATDH[{I|L}P];{[VA]|[{I|L}G]}AATDP[H{I|L}];[Q{I|L}]ATDH[{I|L}P];V{[NV]|[RG]}ESH[{I|L}P];{[VA]|[{I|L}G]}[DG]VSH[{I|L}P];[Q{I|L}]ATDP[H{I|L}];V{I|L}[DN]SH[{I|L}P];{[VA]|[{I|L}G]}[DG]VSP[H{I|L}];{[VA]|[{I|L}G]}PE[QT][H{I|L}] 9.8321;7.054;5.8998;4.1254;3.9334;3.4855;2.9712;2.358;2.3313;1.7125 +;-;-;-;-;-;-;-;-;- + 322 + NaN NaN 217479.6 NaN 2071 1720 3791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3794 28.293 NaN 101750 35 0 12867 0.261 + 9049 HPESGEVTV 9 27 477.73014809995 953.4457432667 2 477.7298583984375 MULTI HCD FTMS 0 0 0 3791 52981.68359375 0.7418825805610326 3 -0.04589653015136719 3 Unmodified _HPESGEVTV_ ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant 6.723162845929126 0.3000504726104499 1 VTV 3 6 31.198 0 0 3.2721 0 0 636.2509022443375 0 636.2509022443375 0 31.197887582883936 0 0 0 0.5 0 0 0 + VTV 3.2721 + + 4 NaN NaN 96539.2 NaN 2072 1720 3791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3795 28.296 NaN 67775 35 0 12750 0.261 + -1 KSPTSCDSNMS 11 26 586.7309534842735 1171.447354035347 2 586.7305297851562 MULTI HCD FTMS 0 0 0 3791 34449.55859375 0.7787751900690763 -7 0.1762714385986328 4 Oxidation (M) _KSPTSCDSNM(Oxidation (M))S_ REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000519868.1_1_5:169502602-169506159:+|nuORF;REV__ENST00000520450.5_1_5:169484535-169509859:+|nuORF;REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF 2.498486711656943 0.4079631525365919 1 G 1 -1 1.5938 0 0 0.13605 0 0 651.2601724941345 460.1366366022094 1111.396809096344 0 0 0 0 0 0 0 0 0 G 0.13605 - 1 + NaN NaN 94909.1 NaN 2073 1720 3791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3796 28.3 NaN 54446 35 0 6806.9 0.261 + 34985 YSSTQVSVR 9 22 513.7646772629802 1025.5148015927603 2 514.2666015625 MULTI HCD FTMS 0 0 0 3791 7150.16064453125 0.3863133514652838 -2 0.050350189208984375 5 Unmodified _YSSTQVSVR_ ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST 13.042465956692817 0.2476723265019929 1 V 1 8 6.9897 0 0 0.68158 0 0 566.234663508579 357.1887301080688 923.4233936166479 0 0 0 0 0 0 0 0 0 + V 0.68158 + + 5 + NaN NaN 102557.1 NaN 2074 1720 3791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3797 28.303 NaN 30435 35 0 3548.4 0.261 + 25529 SFLDEHGLHS 10 25 571.2659224581014 NaN 0 571.2664184570312 PEAK HCD FTMS 0 0 0 3791 8596.263671875 0.40615666030879 -8 0.19988441467285156 6 Unmodified _SFLDEHGLHS_ REV__ENSG00000174514|ENST00000367147|MFSD4A;REV__nc|ENSG00000174514|Q8N468-2|MFSD4A 3.2813086475875832 0.33737594360511275 1 P{I|L} 2 -1 10.969 0 0 0.96177 0 0 137.0579435276772 790.2982271783811 927.3561707060583 0 0 0 0 0 0 0 0 0 P{I|L} 0.96177 - 3 + NaN NaN 92860.6 NaN 2075 1720 3791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3799 28.308 NaN 7068500 35 0 550750 0.327 + 9209 HPLSDHEATL 10 108 560.2751367728551 1118.5357206125102 2 560.275634765625 MULTI HCD FTMS 0 0 0 3798 5148126.5 0.878258276480956 -1 0.023187637329101562 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 181.3275282027936 3.980396822113991E-16 1 HP{I|L}SDHEAT{I|L} 10 0 + 83.087 0 0 7.4282 7.4282 88.983 0 0 0 32.59064207460659 16.319459175083594 16.319459175083594 7.345018503905365 0 2.6307196863200843 0.8538719643217619 2.4698565171985374 0 + + HP{I|L}SDHEAT{I|L};HP{I|L}HDSEAT{I|L};H{I|L}PSDHEAT{I|L};{I|L}HPSDHEAT{I|L};H{I|L}PHDSEAT{I|L};{I|L}HPHDSEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AT{I|L};H{I|L}HPDSEAT{I|L};[{I|L}T]AE[EP]M{I|L}C{I|L};[{I|L}T]AE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EPC{I|L} 7.4282;6.7715;6.3929;6.0159;5.7362;5.3593;4.8843;4.8181;4.8067;4.4513 +;-;-;-;-;-;-;-;-;- + 12696 + NaN NaN 1061920 NaN 2076 1721 3798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3800 28.312 NaN 24904 35 0 6429.6 0.261 + 13952 KYRKDEIVQ 9 23 589.8300967878218 1177.6456406424436 2 589.8306884765625 MULTI HCD FTMS 0 0 0 3798 15473.18359375 0.01782219321496549 73 -1.2967529296875 2 Unmodified _KYRKDEIVQ_ REV__ENSG00000145626|ENST00000274278|UGT3A1 3.2813086475875832 0.32614229037259 1 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.4636324518186 883.4636324518186 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.7806 + + 1 + NaN NaN 82834.4 NaN 2077 1721 3798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3801 28.316 NaN 31775 35 0 4796.1 0.261 -1 HPASDKIEAYM 11 25 639.2955947400341 1276.576636546868 2 639.2951049804688 MULTI HCD FTMS 0 0 0 3798 20221.279296875 0.3703905700739816 -9 0.22307205200195312 3 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.498486711656943 0.4079631525365919 1 A{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2109 0 0 971.427537986525 0 971.427537986525 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[ES]|[DT]|[{I|L}C]} 1.2109 - 4 NaN NaN 100297.6 NaN 2078 1721 3798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3803 28.321 NaN 855640 35 0 88677 0.327 + 27733 TATATNHVL 9 75 464.2482985960435 926.4820442588871 2 464.2481689453125 MULTI HCD FTMS 0 0 0 3802 522136.6875 0.538048115392443 -7 0.16877365112304688 1 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 114.6490535036381 0.0021834323520089267 1 [TA]TA[YK]TQ 8 5 54.143 0 0 5.844 0 0 0 59.01386896861314 59.01386896861314 28.886897073667434 0 0 0 0 1.3494850021680094 1.6989700043360187 1.0994850021680094 0.4247425010840047 [TA]TA[YK]TQ 5.844 - 776 NaN NaN 211538.1 NaN 2079 1722 3802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3804 28.325 NaN 30648 35 0 3480.2 0.261 + 14447 LESEQKQQF 9 24 568.7824960892926 1135.5504392453852 2 568.7831420898438 MULTI HCD FTMS 0 0 0 3802 15423.015625 0.6067296058539238 1 -0.00969696044921875 2 Unmodified _LESEQKQQF_ ENSG00000163840|ENST00000296161|DTX3L 5.296884461304476 0.3108627248283497 1 Q{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8466 0 0 842.4181996076187 0 842.4181996076187 0 20.969100130080562 0 0 0 0 0 0 0 + Q{M(Oxidation (M))|F} 1.8466 + + 3 NaN NaN 85083.7 NaN 2080 1722 3802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3806 28.33 NaN 138330 35 0 24184 0.327 -1 HPASDKIEAYM 11 51 426.5325725466723 1276.575888240217 3 426.5326843261719 MULTI HCD FTMS 0 0 0 3805 43471.12109375 0.4007433008254905 -10 0.22216796875 1 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 16.274544907608252 0.3152817683996968 1 KAY{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.2852 0 0 749.3355068249363 0 749.3355068249363 0 36.453650195120844 0 0 0 1 0 0 0 KAY{M(Oxidation (M))|F} 3.2852 - 28 NaN NaN 104898.4 NaN 2081 1723 3805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3807 28.335 NaN 39995 35 0 6693.8 0.261 -1 MAPALELVSM 10 25 560.2751367728551 1118.5357206125102 2 563.2559814453125 MULTI HCD FTMS 0 0 0 3805 12708.6923828125 0.8179938262486887 -4 0.06930351257324219 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))APALELVSM_ ENST00000430297.6_2_2:220048043-220048127:+|nuORF 1.4819007175156935 0.4674597685733628 1 V{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 10.458 0 0 0.93493 0 0 783.3850075771571 0 783.3850075771571 0 1.5051499783199063 0 0 0 0 0 0 0 V{[MS]|[{M(Oxidation (M))|F}A]} 0.93493 + + 5 + NaN NaN 81136.8 NaN 2082 1723 3805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3809 28.34 NaN 64702 35 0 4737.5 0.411 -1 GQPGCTTATC 10 48 526.7085735818006 NaN 0 526.7084350585938 PEAK HCD FTMS 0 0 0 3808 15337.12109375 0.7426843622245709 -1 0.009489059448242188 1 2 Carbamidomethyl (C) _GQPGC(Carbamidomethyl (C))TTATC(Carbamidomethyl (C))_ ENSG00000165684|ENST00000684778|SNAPC4 6.2057823575117 0.3348729994311477 1 D 1 -1 6.9897 0 0 0.6648 0 0 200.08174569700105 733.2719177153093 933.3536634123104 0 0 0 0 0 0 0 0 0 D 0.6648 - 18 + NaN NaN 100077.1 NaN 2083 1724 3808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3811 28.347 NaN 14515 35 0 4566.8 0.411 + 28334 TNLWQEVDK 9 18 566.7832735563069 NaN 0 566.7836303710938 PEAK HCD FTMS 0 0 0 3810 5106.1767578125 0.505709478851982 1 -0.0075893402099609375 1 Unmodified _TNLWQEVDK_ REV__KRT39|p.F287L|1|0.08|ENSG00000196859|chr17:40962411-40962411|G/C|missense_variant 1.4819007175156935 0.28806575819904134 1 W 1 -1 6.9897 0 0 0.61771 0 0 328.1729791421074 614.2871798150999 942.4601589572073 0 0 0 0 0 0 0 0 0 W 0.61771 + + 1 + NaN NaN 91546.8 NaN 2084 1725 3810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3813 28.355 NaN 1631300 35 0 207190 0.326 + 3017 EADPGQYRC 9 61 519.7191112988619 1037.4236696645237 2 519.71923828125 MULTI HCD FTMS 0 0 0 3812 663691.1875 1 0 0 1 Unmodified _EADPGQYRC_ ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-2|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG 114.6490535036381 0.0021834323520089267 1 [PG]QDAEYRC 9 6 + 41.058 0 0 3.9577 3.9577 83.261 0 0 0 4.762036441594191 6.756820931039158 4.762036441594191 7.781512503836424 0 0.3807196863200844 0 1.3494850021680094 0.4247425010840047 [PG]QDAEYRC;[PG]DQAEYRC;[PG][AG]DAEYRC;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;[PG]D[AG]AEYRC;[PG]DQ{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}[YK]C;[PG]DP{[DS]|[MA]|[CV]|TT}GP{[HG]|PP}C;[PG][AG]D{NN|[MP]|[D{I|L}]|[EV]}P[C(Carbamidomethyl (C))H];[C(Carbamidomethyl (C))H]P[DV]PD[QA] 3.9577;3.2076;2.6607;2.3602;1.9106;1.6101;1.0691;1.0272;0.89343;0.82317 -;-;-;-;-;-;-;-;-;- 588 NaN NaN 333949.5 NaN 2085 1726 3812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3814 28.359 NaN 78352 35 0 10524 0.261 + -1 LCMELLSP 8 22 489.7357618886916 977.4569708441833 2 489.7357482910156 MULTI HCD FTMS 0 0 0 3812 16263.625 0.7742135833361459 -1 0.0075893402099609375 2 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))M(Oxidation (M))ELLSP_ REV__ENST00000460581.6_1_14:31355383-31355425:+|nuORF 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92199 NaN 2086 1726 3812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3815 28.363 NaN 30067 35 0 4207.3 0.261 -1 FEYETPEM 8 24 531.2091674804688 NaN 0 531.2091674804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _FEYETPEM(Oxidation (M))_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 4.75600775471527 0.38822285293237185 1 D 1 -1 1.1092 0 0 0.10461 0 0 541.1073515607437 401.2491854303344 942.3565369910782 0 0 0 0 0 0 0 0 0 D 0.10461 - 1 + NaN NaN 92232.1 NaN 2087 1726 3812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3816 28.366 NaN 33318 35 0 7049.2 0.261 -1 NPPPNADPNM 10 23 541.7323005791485 NaN 0 541.7327270507812 PEAK HCD FTMS 0 0 0 3812 9412.5791015625 0.615401024408327 -1 0.0075893402099609375 4 Oxidation (M) _NPPPNADPNM(Oxidation (M))_ ENSG00000162613|ENST00000370768|FUBP1;FUBP1-USP33|1|fusion;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;nc|ENSG00000162613|Q96AE4-2|FUBP1 7.608950283845883 0.3336720821603257 1 D 1 -1 9.6041 0 0 0.88808 0 0 590.2792241057595 373.1182039850219 963.3974280907814 0 0 0 0 0 0.5 0 0 0 D 0.88808 + + 3 + NaN NaN 107486.9 NaN 2088 1726 3812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3818 28.371 NaN 734910 35 0 259960 0.327 + 25963 SPDGSDPKL 9 41 458.2246892267179 914.4348255202358 2 458.224609375 MULTI HCD FTMS 0 0 0 3817 425205.125 0.8722966639657748 -2 0.0236358642578125 1 Unmodified _SPDGSDPKL_ ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48 51.41523569358685 0.02959097413485123 1 [PS]DGDSPK{I|L} 9 2 + 76.265 0 0 8.3401 8.3401 93.347 0 0 0 11.205065448681921 11.205065448681921 11.205065448681921 11.205065448681921 0 1.742992819099939 1.6989700043360187 0.7742275032520141 0 [PS]DGDSPK{I|L};SPDGSDPK{I|L};SPDGSD{I|L}[KP] 8.3401;7.1147;6.5443 -;+;- + 99 NaN NaN 187532.5 NaN 2089 1727 3817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3819 28.376 NaN 586520 35 0 60599 0.261 + 3392 EEVHDLERKY 10 74 439.88612091880964 1316.636533356629 3 439.8861389160156 MULTI HCD FTMS 0 0 0 3817 327952.40625 0.76897549846494 3 -0.04560089111328125 2 Unmodified _EEVHDLERKY_ ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-2|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4 47.05281240577143 0.08850780272539858 1 EEVHD{I|L}ERKY 10 0 + 56.782 0 0 4.3127 4.3127 82.675 0 0 0 7.269987279362624 5.172203223519531 5.172203223519531 5.172203223519531 0 1.4731975075880328 0 0 0.6643943297944485 + + EEVHD{I|L}ERKY;EEVHD{I|L}EY[RK];EEVHD{I|L}[RV]{[SA]|[TG]}Y;EEVHDY{[QN]|[E{I|L}]|[KN]}[RK];EEV[RV]{I|L}DH{[SA]|[TG]}Y 4.3127;3.9198;3.4951;3.2243;2.9977 +;-;-;-;- + 314 + NaN NaN 162750.5 NaN 2090 1727 3817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3820 28.379 NaN 29753 35 0 4286.4 0.261 + 32543 WHSRQACPWEG 11 24 452.8699185439147 NaN 0 452.8703308105469 PEAK HCD FTMS 0 0 0 3817 17554.5859375 0.7135882502108305 3 -0.04560089111328125 3 Unmodified _WHSRQACPWEG_ ENST00000264025.7_1_11:119533714-119534059:-|nuORF 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82458.3 NaN 2091 1727 3817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3821 28.383 NaN 76920 35 0 9060.4 0.261 + -1 WHMMVFKN 8 36 562.7550832465919 NaN 0 562.7554931640625 PEAK HCD FTMS 0 0 0 3817 5669.5703125 0.46120758241776577 -3 0.031097412109375 4 2 Oxidation (M) _WHM(Oxidation (M))M(Oxidation (M))VFKN_ REV__ENSG00000180964|ENST00000372685|TCEAL8 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91880.3 NaN 2092 1727 3817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3823 28.388 NaN 152430 35 0 46327 0.327 + 7965 GEEGPSAAP 9 42 407.68243662756527 813.3503203219306 2 407.68243408203125 MULTI HCD FTMS 0 0 0 3822 132485.78125 0.08856498710489091 14 -0.31999969482421875 1 Unmodified _GEEGPSAAP_ ENST00000500447.1_1_11:567068-567254:-|nuORF 30.224811164608877 0.11021837014094292 1 AAP 3 6 30.802 0 0 3.787 0 0 556.2129739857962 0 556.2129739857962 0 21.338031200885155 0 0 0 1 0 0 0 + AAP 3.787 + + 20 + NaN NaN 118300.7 NaN 2093 1728 3822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3824 28.392 NaN 71884 35 0 9814 0.261 + -1 PHYLMCLR 8 35 553.2672343400287 1104.5199157468574 2 553.267333984375 MULTI HCD FTMS 0 0 0 3822 30284.98046875 0.006135824876688277 262 -5.533466339111328 2 Carbamidomethyl (C),Oxidation (M) _PHYLM(Oxidation (M))C(Carbamidomethyl (C))LR_ REV__ENSG00000007923|ENST00000377577|DNAJC11;REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF;REV__ENST00000465911.1_1_1:6730943-6761860:-|nuORF;REV__ENST00000473993.5_1_1:6727844-6761860:-|nuORF;REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF;REV__nc|ENSG00000007923|Q9NVH1-2|DNAJC11;REV__nc|ENSG00000007923|Q9NVH1-3|DNAJC11;REV__NOL9-DNAJC11|1|fusion 2.577480529830294 0.5381683276125971 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.3995 0 0 771.3370228498062 0 771.3370228498062 0 11.478174818886375 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.3995 - 3 NaN NaN 85715.9 NaN 2094 1728 3822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3826 28.397 NaN 303150 35 0 47542 0.326 + 9491 HPWVDYTA 8 56 494.7278627754139 NaN 0 494.72784423828125 PEAK HCD FTMS 0 0 0 3825 96019.5625 0.8748799936675238 2 -0.035991668701171875 1 Unmodified _HPWVDYTA_ EIF2B1|p.E268Q|1|0.24|ENSG00000111361|chr12:123621872-123621872|C/G|missense_variant;ENSG00000111361|ENST00000424014|EIF2B1 19.438996006549623 0.38500361301801034 1 AEH 3 8 20.802 0 0 2.1067 0 0 101.04837090697079 546.2309664361936 647.2793373431645 0 0 0 0 0 0 0 0.7614393726401688 0 AEH 2.1067 - 73 + NaN NaN 122653.5 NaN 2095 1729 3825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3827 28.402 NaN 194880 35 0 24233 0.261 + 25903 SNPEQDLKL 9 54 522.2718531343755 1042.529153335551 2 522.2717895507812 MULTI HCD FTMS 0 0 0 3825 57028.31640625 0.22933245428509313 11 -0.2633647918701172 2 Unmodified _SNPEQDLKL_ ENSG00000166351|ENST00000299443|POTED;ENSG00000183206|ENST00000358970|POTEC;ENSG00000187537|ENST00000547848|POTEG;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196834|ENST00000451531|POTEI;ENSG00000198062|ENST00000343518|POTEH;ENSG00000222036|ENST00000547889|POTEM;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000230031|ENST00000454856|POTEB2;ENSG00000233917|ENST00000439682|POTEB;ENSG00000278522|ENST00000611217|POTEB3;nc|ENSG00000187537|Q6S5H5-2|POTEG;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA;nc|ENSG00000278522|A0JP26-3|POTEB3 9.38312468134398 0.279288223203164 1 TTY{[ES]|[DT]|[{I|L}C]}V{I|L} 7 7 26.247 0 0 2.5176 0 0 231.13286025215 0 231.13286025215 0 8.28804147706549 0 0 0 0.3807196863200844 0 0 0 TTY{[ES]|[DT]|[{I|L}C]}V{I|L} 2.5176 - 66 NaN NaN 108418.5 NaN 2096 1729 3825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3828 28.405 NaN 64418 35 0 15370 0.261 + -1 RCALCIAL 8 22 488.7568879417087 975.4992229502175 2 488.7576599121094 MULTI HCD FTMS 0 0 0 3825 19477.697265625 0.6343659095896772 8 -0.1697254180908203 3 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))ALC(Carbamidomethyl (C))IAL_ REV__ENSG00000102312|ENST00000326194|PORCN;REV__nc|ENSG00000102312|Q9H237-2|PORCN;REV__nc|ENSG00000102312|Q9H237-3|PORCN;REV__nc|ENSG00000102312|Q9H237-4|PORCN 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98231.2 NaN 2097 1729 3825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3829 28.409 NaN 33458 35 0 4626.6 0.261 -1 0 23 513.2413588795854 1024.4681648259707 2 513.2413940429688 MULTI HCD FTMS 0 0 0 3825 4674.37255859375 0.0923553050071352 -47 0.7718467712402344 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85389.9 NaN 2098 1729 3825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3830 28.412 NaN 57568 35 0 7664.4 0.261 -1 MGLSGDCCCC 10 33 525.1470989230884 1048.2796449129767 2 525.1473999023438 MULTI HCD FTMS 0 0 0 3825 13222.0654296875 0.5519404017963242 3 -0.059185028076171875 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GLSGDCCCC_ ENST00000404569.5_3_22:39905450-39907313:+|nuORF 0 0.4753037046562868 1 V 1 -1 5.4846 0 0 0.5232 0 0 596.1317394948111 350.0581453912719 946.1898848860831 0 0 0 0 0 0 0 0 0 V 0.5232 - 3 + NaN NaN 86444.4 NaN 2099 1729 3825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3832 28.417 NaN 268840 35 0 77390 0.327 + 9369 HPTDDTTTL 9 26 500.7327982630624 999.4510435929249 2 500.73284912109375 MULTI HCD FTMS 0 0 0 3831 154198.90625 0.08567603671622036 17 -0.37436676025390625 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 20.453626601364224 0.18364154288633264 1 TT{I|L} 3 6 42.435 0 0 4.2458 0 0 666.2619496076187 0 666.2619496076187 0 31.197887582883936 0 0 0 1 0 0.9247425010840047 0 + TT{I|L} 4.2458 + + 8 NaN NaN 136735.3 NaN 2100 1730 3831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3833 28.421 NaN 101220 35 0 20467 0.261 + 28873 TVTSVVSSR 9 30 468.2613491686587 934.5081454041174 2 468.2611999511719 MULTI HCD FTMS 0 0 0 3831 65127.84765625 0.8533479339257509 2 -0.039703369140625 2 Unmodified _TVTSVVSSR_ ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11 21.590151480376914 0.17382222009858564 1 {[TV]|[{I|L}S]}TSVVS{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 70.379 0 0 7.5311 7.5311 96.047 0 0 0 66.39969987625378 7.147642715192504 7.147642715192504 70.37909996297415 0 0.8494850021680094 2 0 0 + + {[TV]|[{I|L}S]}TSVVS{[QD]|[EN]|[WG]|[KD]|[RS]} 7.5311 + + 35 + NaN NaN 93968.2 NaN 2101 1730 3831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3834 28.425 NaN 125480 35 0 15656 0.261 + 68 ADATEAKNK 9 34 474.2434967709078 946.4724406086157 2 474.2430419921875 MULTI HCD FTMS 0 0 0 3831 48215.8046875 0.3461183417922151 -4 0.06164741516113281 3 Unmodified _ADATEAKNK_ ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF 27.628801355627647 0.12213550946336599 1 {[DA]|[EG]}TAEATR{I|L} 9 5 + 57.712 0 0 6.0976 6.0976 93.185 0 0 0 36.74288105545884 1.974987195809419 1.974987195809419 57.7119811855394 0 1.860924374808178 0 0.5 0 {[DA]|[EG]}TAEATR{I|L} 6.0976 - 45 + NaN NaN 98212.3 NaN 2102 1730 3831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3835 28.428 NaN 33235 35 0 8235.4 0.261 + -1 CAAVYWAPM 9 25 542.73125048785 NaN 0 542.7318725585938 PEAK HCD FTMS 0 0 0 3831 7298.16796875 0.8502314968613449 1 -0.016510009765625 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))AAVYWAPM(Oxidation (M))_ REV__ENSG00000131626|ENST00000253925|PPFIA1;REV__ENSG00000139220|ENST00000549396|PPFIA2;REV__ENSG00000143847|ENST00000295706|PPFIA4;REV__ENSG00000177380|ENST00000334186|PPFIA3;REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF;REV__ENST00000532504.5_1_11:70185286-70228249:+|nuORF;REV__ENST00000532793.1_1_11:70208405-70208696:+|nuORF;REV__nc|ENSG00000131626|Q13136-2|PPFIA1;REV__nc|ENSG00000139220|O75334-2|PPFIA2;REV__nc|ENSG00000139220|O75334-3|PPFIA2;REV__nc|ENSG00000139220|O75334-4|PPFIA2;REV__nc|ENSG00000139220|O75334-5|PPFIA2;REV__nc|ENSG00000139220|O75334-6|PPFIA2;REV__nc|ENSG00000139220|O75334-7|PPFIA2;REV__nc|ENSG00000139220|O75334-8|PPFIA2;REV__nc|ENSG00000143847|O75335-1|PPFIA4;REV__nc|ENSG00000143847|O75335-2|PPFIA4;REV__nc|ENSG00000143847|O75335|PPFIA4;REV__nc|ENSG00000177380|O75145-2|PPFIA3 9.347437153973935 0.2499504662953367 1 N 1 -1 10.485 0 0 0.9677 0 0 750.3117003391782 216.0767763727172 966.3884767118954 0 0 0 0 0 0.5 0 0 0 N 0.9677 - 3 + NaN NaN 83997.7 NaN 2103 1730 3831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3837 28.434 NaN 5748100 35 0 492920 0.327 + 9210 HPLSDHEATL 10 115 560.2751367728551 1118.5357206125102 2 560.275634765625 MULTI HCD FTMS 0 0 0 3836 3954902.75 0.6746971102720171 9 -0.2273731231689453 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 181.3275282027936 3.980396822113991E-16 1 HP{I|L}SDHEAT{I|L} 10 0 + 81.015 0 0 7.243 7.243 91.125 0 0 0 28.944120902248727 14.234036539717152 14.234036539717152 9.616907486102065 0 2.5994850021680094 0.958607314841775 2.2104093769761874 0 + + HP{I|L}SDHEAT{I|L};H{I|L}PSDHEAT{I|L};{I|L}HPSDHEAT{I|L};HP{I|L}[HD]SEAT{I|L};HPPTSANE{I|L}[PG];HPPTSANEA[VP];H{I|L}P[HD]SEAT{I|L};HPPTSAN{I|L}E[PG];{I|L}HP[HD]SEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]M{M(Oxidation (M))|F}AT{I|L} 7.243;6.3832;6.3147;6.0073;5.4317;5.2109;5.1475;5.0975;5.079;4.9315 +;-;-;-;-;-;-;-;-;- + 13043 + NaN NaN 800410.4 NaN 2104 1731 3836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3838 28.438 NaN 51134 35 0 9069.3 0.261 -1 SKSATCENME 10 27 586.7309534842735 1171.447354035347 2 586.7307739257812 MULTI HCD FTMS 0 0 0 3836 27351.44921875 0.6183135846582712 4 -0.08691787719726562 2 Carbamidomethyl (C),Oxidation (M) _SKSATC(Carbamidomethyl (C))ENM(Oxidation (M))E_ ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92695.9 NaN 2105 1731 3836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3839 28.442 NaN 28512 35 0 5123.5 0.261 -1 SQFMGNVYH 9 20 549.7351703365318 NaN 0 549.7353515625 PEAK HCD FTMS 0 0 0 3836 9462.84375 0.5727968050902913 5 -0.10696792602539062 3 Oxidation (M) _SQFM(Oxidation (M))GNVYH_ nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106184.2 NaN 2106 1731 3836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3840 28.445 NaN 69517 35 0 11690 0.261 + 22285 QPEANPSHL 9 30 496.7430682095443 991.4715834858886 2 496.74334716796875 MULTI HCD FTMS 0 0 0 3836 26058.21875 0.13650109370236155 -7 0.09320831298828125 4 Unmodified _QPEANPSHL_ ENST00000261509.10_1_4:169846154-169847533:+|nuORF;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93|PALLD 6.2057823575117 0.30397260197431997 1 N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 4 7 13.188 0 0 1.3301 0 0 452.23745702054043 0 452.23745702054043 0 5.228787452803374 0 0 0 0 0 0 0 N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 1.3301 - 13 NaN NaN 91689.3 NaN 2107 1731 3836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3841 28.448 NaN 13372 35 0 4170 0.261 + 4042 ESCLVDFLLC 10 12 571.2659224581014 NaN 0 571.2656860351562 PEAK HCD FTMS 0 0 0 3836 9079.240234375 0.42897635908957815 2 -0.04002571105957031 5 Unmodified _ESCLVDFLLC_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|313|3|anti-sense 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88644 NaN 2108 1731 3836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3842 28.452 NaN 46282 35 0 6252.7 0.261 + -1 FCKCGNQI 8 30 513.7280663626921 1025.441579792184 2 513.7288818359375 MULTI HCD FTMS 0 0 0 3836 3249.2490234375 0.17424600759779252 -3 0.0457916259765625 6 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))KC(Carbamidomethyl (C))GNQI_ REV__ENSG00000163239|ENST00000368482|TDRD10;REV__nc|ENSG00000163239|Q5VZ19|TDRD10 2.302733041254933 0.5385759549224092 1 Q{I|L} 2 -1 20.969 0 0 2.0449 0 0 766.2906971662125 0 766.2906971662125 0 13.979400086720375 0 0 0 0 0 0 0 Q{I|L} 2.0449 + + 7 NaN NaN 85609.4 NaN 2109 1731 3836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3844 28.457 NaN 1115600 35 0 139490 0.327 + 27734 TATATNHVL 9 77 464.2482985960435 926.4820442588871 2 464.2482604980469 MULTI HCD FTMS 0 0 0 3843 754417.6875 0.7774075729510963 3 -0.06372451782226562 1 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 126.56589448801843 0.0008132384440316759 1 [TA]TA[YK]TQ 8 5 61.877 0 0 6.6787 0 0 0 59.01414251668237 59.01414251668237 32.32779677648047 0 0 0 0 1.3494850021680094 1.6989700043360187 1.4749073637206092 0.4247425010840047 [TA]TA[YK]TQ 6.6787 - 1244 NaN NaN 244752 NaN 2110 1732 3843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3845 28.461 NaN 395090 35 0 19850 0.261 + 28711 TSSAQIIQR 9 79 502.2800837742733 1002.5456146153466 2 502.2801208496094 MULTI HCD FTMS 0 0 0 3843 120644.6015625 0.9129851869754736 1 -0.016832351684570312 2 Unmodified _TSSAQIIQR_ ENSG00000076053|ENST00000375490|RBM7;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7 106.94017166704063 0.003441928997083001 1 {[MG]|[TS]}VAQT{I|L}QR 9 2 + 67.233 0 0 6.7063 6.7063 84.564 0 0 0 24.982405045390678 16.478174818886373 16.478174818886373 0.49295319867226794 0 1.1382104921644451 0 0.4247425010840047 0 {[MG]|[TS]}VAQT{I|L}QR;{[MG]|[TS]}SAQ{I|L}{I|L}QR;{[MG]|[TS]}VAQ{I|L}TQR;{[MG]|[TS]}VA[AG]T{I|L}QR;{[MG]|[TS]}VAQT{I|L}[AG]R;{[MG]|[TS]}VK[PS]TQR;{[MG]|[TS]}SA[AG]{I|L}{I|L}QR;{[MG]|[TS]}SAQ{I|L}{I|L}[AG]R;{[MG]|[TS]}VA[AG]{I|L}TQR;{[MG]|[TS]}VAQ{I|L}T[AG]R 6.7063;6.6571;6.5829;5.7878;5.7878;5.7487;5.7386;5.7386;5.6644;5.6644 -;+;-;-;-;-;-;-;-;- + 806 + NaN NaN 140808.2 NaN 2111 1732 3843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3846 28.465 NaN 66314 35 0 8241.8 0.261 -1 HPASDKIEAYM 11 24 639.2955947400341 1276.576636546868 2 639.29541015625 MULTI HCD FTMS 0 0 0 3843 45177.06640625 0.8275025103415194 2 -0.05027198791503906 3 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 10.799506525563784 0.36298595732910816 1 HPA 3 -1 31.198 0 0 2.4439 0 0 0 968.4015596979124 968.4015596979124 14.999999999999996 0 0 0 0 0.5 0 0 0 HPA 2.4439 + + 14 + NaN NaN 94005.8 NaN 2112 1732 3843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3847 28.468 NaN 17494 35 0 4416.5 0.261 + -1 HCQPRPWR 8 19 568.782470703125 NaN 0 568.782470703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _HC(Carbamidomethyl (C))QPRPWR_ REV__nc|ENSG00000189159|Q9UK76-2|JPT1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99768.7 NaN 2113 1732 3843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3849 28.474 NaN 229180 35 0 41133 0.327 -1 HPASDKIEAYM 11 43 426.5325725466723 1276.575888240217 3 426.5325622558594 MULTI HCD FTMS 0 0 0 3848 108476.2265625 1 0 0 1 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 20.871137199558856 0.2752315090543355 1 AY{M(Oxidation (M))|F} 3 -1 41.198 0 0 3.2272 0 0 877.4296918064264 0 877.4296918064264 0 35.713337517843655 0 0 0 1.5 0 0 0 AY{M(Oxidation (M))|F} 3.2272 + + 14 + NaN NaN 114576.9 NaN 2114 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3850 28.478 NaN 142520 35 0 26779 0.261 + 22286 QPEANPSHL 9 41 496.7430682095443 991.4715834858886 2 496.7434997558594 MULTI HCD FTMS 0 0 0 3848 67419.0546875 0.35316207870973815 -5 0.08581733703613281 2 Unmodified _QPEANPSHL_ ENST00000261509.10_1_4:169846154-169847533:+|nuORF;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93|PALLD 8.745405648335112 0.2847203663274469 1 [QP]EAN[PS][H{I|L}] 9 0 + 20.123 0 0 2.0296 2.0296 84.195 0 0 0 8.440899702813029 3.925449767853312 3.925449767853312 9.208187539523752 0 0 0 0 0 + + [QP]EAN[PS][H{I|L}];[QP]EAGG[PS][H{I|L}] 2.0296;1.1009 +;- + 63 + NaN NaN 103175.9 NaN 2115 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3851 28.482 NaN 224410 35 0 24018 0.261 + 4039 ESAQDFASR 9 41 505.73073271381503 1009.4469124944301 2 505.7303466796875 MULTI HCD FTMS 0 0 0 3848 51620.3203125 0.8881675756378604 -1 0.016832351684570312 3 Unmodified _ESAQDFASR_ CLTC-VMP1|10|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;ENSG00000062716|ENST00000262291|VMP1;nc|ENSG00000062716|Q96GC9-2|VMP1;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|3|fusion;RPS6KB1-VMP1|4|fusion;VMP1-RPS6KB1|1|fusion 7.608950283845883 0.29333554423920943 1 D{M(Oxidation (M))|F}ASR 5 4 20.177 0 0 1.9988 0 0 415.1707198978982 0 415.1707198978982 0 10.255762612236905 0 0 0 0 0 0 0 + D{M(Oxidation (M))|F}ASR 1.9988 + + 32 + NaN NaN 131615.9 NaN 2116 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3852 28.485 NaN 23167 35 0 4111 0.261 + 13955 KYRLVEEKN 9 20 589.8300967878218 1177.6456406424436 2 589.8298950195312 MULTI HCD FTMS 0 0 0 3848 14523.0009765625 0.016727761801390236 85 -1.6185054779052734 4 Unmodified _KYRLVEEKN_ REV__ENSG00000129518|ENST00000250454|EAPP 1.4819007175156935 0.3397831423917744 1 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.4610689752561 883.4610689752561 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.7806 + + 1 + NaN NaN 87206 NaN 2117 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3853 28.489 NaN 49843 35 0 4980.3 0.261 + -1 FCKCGNQI 8 30 513.7280663626921 1025.441579792184 2 513.7274169921875 MULTI HCD FTMS 0 0 0 3848 16488.939453125 0.8842448973606731 -1 0.016832351684570312 5 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))KC(Carbamidomethyl (C))GNQI_ REV__ENSG00000163239|ENST00000368482|TDRD10;REV__nc|ENSG00000163239|Q5VZ19|TDRD10 2.302733041254933 0.5385759549224092 1 Q{I|L} 2 -1 19.464 0 0 1.8981 0 0 766.2858753888687 0 766.2858753888687 0 6.760912590556812 0 0 0 0 0 0 0 Q{I|L} 1.8981 + + 10 NaN NaN 93886.5 NaN 2118 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3854 28.492 NaN 46272 35 0 4324.6 0.261 + 3661 ELLCFCAR 8 29 477.73014809995 953.4457432667 2 477.729736328125 MULTI HCD FTMS 0 0 0 3848 10524.9072265625 0.14737631580904972 16 -0.36142539978027344 6 Unmodified _ELLCFCAR_ REV__ENSG00000198730|ENST00000361367|CTR9 2.302733041254933 0.5385759549224092 1 R 1 -1 13.979 0 0 1.4662 0 0 779.3334823797844 0 779.3334823797844 0 -6.9897000433601875 -6.9897000433601875 0 0 0 0 0 0 R 1.4662 + + 2 + NaN NaN 83375.6 NaN 2119 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3855 28.495 NaN 13598 35 0 5693.6 0.261 + 19551 NSQENDDWKR 10 12 646.28564453125 NaN 0 646.28564453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NSQENDDWKR_ REV__ENST00000498873.5_1_4:120419020-120434055:+|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85415.4 NaN 2120 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3856 28.498 NaN 39575 35 0 4724.1 0.261 + -1 KQMDANSLAM 10 20 562.7550832465919 NaN 0 562.7550048828125 PEAK HCD FTMS 0 0 0 3848 9135.125 0.7431231441023057 3 -0.06694221496582031 8 Oxidation (M) _KQMDANSLAM(Oxidation (M))_ REV__ENST00000545001.2_1_12:64732273-64732573:-|nuORF 2.735195868890462 0.33784334045437464 1 A 1 -1 6.9897 0 0 0.62214 0 0 165.0398162961149 884.3948513809248 1049.4346676770397 0 0 0 0 0 0 0 0 0 A 0.62214 + + 1 + NaN NaN 81248.4 NaN 2121 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3857 28.502 NaN 40272 35 0 8946.7 0.261 + 2450 DQAKLQGTT 9 28 481.25185744224444 NaN 0 481.25213623046875 PEAK HCD FTMS 0 0 0 3848 5365.90185546875 0.847652557516616 1 -0.03343963623046875 9 Unmodified _DQAKLQGTT_ MMP28|p.A495G|1|0.2|ENSG00000271447|chr17:35766579-35766579|G/C|missense_variant 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78408.7 NaN 2122 1733 3848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3859 28.507 NaN 62022 35 0 6274.8 0.326 -1 PHHMNPHM 8 37 516.7093311369048 NaN 0 516.7092895507812 PEAK HCD FTMS 0 0 0 3858 6736.63720703125 0.4372597495322714 4 -0.09702873229980469 1 2 Oxidation (M) _PHHM(Oxidation (M))NPHM(Oxidation (M))_ ENSG00000100207|ENST00000677622|TCF20;nc|ENSG00000100207|Q9UGU0-2|TCF20 2.8892196856762586 0.38822285293237185 1 T 1 -1 6.9897 0 0 0.67769 0 0 590.1453640786939 337.1877535455688 927.3331176242627 0 0 0 0 0 0 0 0 0 T 0.67769 - 3 + NaN NaN 84478.8 NaN 2123 1734 3858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3860 28.512 NaN 27651 35 0 5322.3 0.261 + -1 FPTCTCETW 9 26 572.7252295789342 1143.4359062246683 2 572.7249145507812 MULTI HCD FTMS 0 0 0 3858 5025.904296875 0.45694047027562434 1 -0.013452529907226562 2 Carbamidomethyl (C) _FPTCTC(Carbamidomethyl (C))ETW_ REV__ENST00000355947.6_1_7:99489832-99489904:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88668.8 NaN 2124 1734 3858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3861 28.515 NaN 62534 35 0 9286.7 0.262 + 29675 VATDITSTR 9 32 482.25914553277966 962.5037381323593 2 482.2585144042969 MULTI HCD FTMS 0 0 0 3858 31615.47265625 0.7207943987657307 -3 0.07346534729003906 3 Unmodified _VATDITSTR_ ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 10.799506525563784 0.2670509983294061 1 T{I|L}D[PG]V 6 7 26.911 0 0 2.796 0 0 362.19249159980626 0 362.19249159980626 0 26.91122510072759 0 0 0 0 0 0 0 T{I|L}D[PG]V 2.796 - 15 NaN NaN 108562.7 NaN 2125 1734 3858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3863 28.521 NaN 249790 35 0 89774 0.327 + 25964 SPDGSDPKL 9 36 458.2246892267179 914.4348255202358 2 458.2245178222656 MULTI HCD FTMS 0 0 0 3862 147233.9375 0.30204638879598494 6 -0.1738414764404297 1 Unmodified _SPDGSDPKL_ ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48 16.149105407346934 0.22083165093524068 1 [PS]D 3 6 14.265 0 0 1.56 0 0 0 612.2984713190061 612.2984713190061 12.670977955685531 0 0 0 0 0.3807196863200844 0 0 0 + [PS]D 1.56 + + 7 + NaN NaN 118546.4 NaN 2126 1735 3862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3864 28.525 NaN 141060 35 0 14245 0.261 + 15219 LNTRKLDMPET 11 39 439.89922601017446 NaN 0 439.88616943359375 PEAK HCD FTMS 0 0 0 3862 2125.072021484375 0.9060538144832332 -1 0.013452529907226562 2 Unmodified _LNTRKLDMPET_ ENSG00000272899|ENST00000609480|ATP6V1FNB 1.1097533296519684 0.33897209286470975 1 {I|L}D 2 9 7.0783 0 0 0.80639 0 0 173.47086305374893 473.1784762018188 646.6493392555677 0 0 0 0 0 0 0 0 0 + {I|L}D 0.80639 + + 6 + NaN NaN 102002.4 NaN 2127 1735 3862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3865 28.529 NaN 69958 35 0 6562.3 0.261 + 8474 HADPHSIDTL 10 33 553.2672343400287 1104.5199157468574 2 553.267333984375 MULTI HCD FTMS 0 0 0 3862 28188.673828125 0.005711107071504743 269 -5.767112731933594 3 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 10.073929032068715 0.4168838835836452 1 VT{I|L} 3 -1 23.672 0 0 2.1432 0 0 773.2906971662125 0 773.2906971662125 0 3.979400086720375 0 0 0 0 0 0.5 0 VT{I|L} 2.1432 - 9 NaN NaN 90099.9 NaN 2128 1735 3862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3866 28.532 NaN 47374 35 0 8265.8 0.261 + 16380 LSFQVAIGW 9 27 510.77882621954024 1019.5430995058805 2 510.77880859375 MULTI HCD FTMS 0 0 0 3862 15326.779296875 0.7983946666460471 -1 0.013452529907226562 4 Unmodified _LSFQVAIGW_ REV__ENST00000451003.5_1_2:27275405-27275867:+|nuORF;REV__ENST00000487078.5_1_2:27274523-27275867:+|nuORF 7.910154910731844 0.2910521888787154 1 {[TV]|[{I|L}S]}W 3 -1 33.952 0 0 3.3302 0 0 0 630.3394869440061 630.3394869440061 33.95242492728684 0 0 0 0 0.3494850021680094 2 0 0 {[TV]|[{I|L}S]}W 3.3302 - 4 + NaN NaN 94199.2 NaN 2129 1735 3862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3867 28.535 NaN 20258 35 0 4162.1 0.261 + 32855 WWLGRCKTS 9 22 568.7877807617188 NaN 0 568.7877807617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _WWLGRCKTS_ REV__ENSG00000113946|ENST00000264734|CLDN16 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86561.8 NaN 2130 1735 3862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3869 28.541 NaN 258770 35 0 77766 0.327 + 27936 TENTEENRRFY 11 41 486.89180380724434 1457.653582021933 3 486.8917236328125 MULTI HCD FTMS 0 0 0 3868 69309.1796875 0.7392973005855829 1 -0.026765823364257812 1 Unmodified _TENTEENRRFY_ ENSG00000149925|ENST00000642816|ALDOA;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 17.571907917122694 0.3039778019619682 1 TENTEEG 7 5 65.221 0 0 4.4744 0 0 0 694.3537637181632 694.3537637181632 58.23145724778165 0 0 0 0 0.5 1.6989700043360187 0 0.8494850021680094 TENTEEG 4.4744 - 29 + NaN NaN 122605.5 NaN 2131 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3870 28.545 NaN 101210 35 0 15828 0.261 + 26406 STAKIQIVR 9 32 508.3166427093459 1014.6187324854918 2 508.3168029785156 MULTI HCD FTMS 0 0 0 3868 50454.14453125 1 0 0 2 Unmodified _STAKIQIVR_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 13.90604991867851 0.24021115267848145 1 {[MG]|[TS]}AK{I|L}[Q{I|L}]VR 9 0 + 35.864 0 0 3.5347 3.5347 88.53 0 0 0 19.409999832893597 13.645162531850879 13.645162531850879 35.86365002801444 0 0 0 0 0 + + {[MG]|[TS]}AK{I|L}[Q{I|L}]VR 3.5347 + + 20 + NaN NaN 118263.1 NaN 2132 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3871 28.549 NaN 41362 35 0 7384 0.261 -1 MGLSGDCCCC 10 22 525.1470989230884 1048.2796449129767 2 525.1464233398438 MULTI HCD FTMS 0 0 0 3868 12844.4814453125 0.536178578716863 10 -0.23763656616210938 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GLSGDCCCC_ ENST00000404569.5_3_22:39905450-39907313:+|nuORF 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83040.1 NaN 2133 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3872 28.552 NaN 20789 35 0 5259.7 0.261 + 35106 YVDLKSLRH 9 13 565.8189691652483 NaN 0 565.8191528320312 PEAK HCD FTMS 0 0 0 3868 4520.52783203125 0.43281702514553866 6 -0.16724014282226562 4 Unmodified _YVDLKSLRH_ ENSG00000066084|ENST00000301180|DIP2B 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89618.1 NaN 2134 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3873 28.556 NaN 29768 35 0 4572.2 0.261 + 2124 DFNHYKME 8 18 542.2335108911168 NaN 0 542.23291015625 PEAK HCD FTMS 0 0 0 3868 5011.26025390625 0.7253027677595472 1 -0.026765823364257812 5 Unmodified _DFNHYKME_ ENSG00000071205|ENST00000336498|ARHGAP10 4.75600775471527 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84506 NaN 2135 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3874 28.559 NaN 17402 35 0 5116.9 0.261 -1 TYKPRFCGVC 10 16 644.3038718159758 NaN 0 644.3045043945312 PEAK HCD FTMS 0 0 0 3868 2359.791259765625 0.2653629406076223 4 -0.12040519714355469 6 2 Carbamidomethyl (C) _TYKPRFC(Carbamidomethyl (C))GVC(Carbamidomethyl (C))_ ENSG00000136999|ENST00000259526|CCN3 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98798 NaN 2136 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3875 28.562 NaN 9819.3 35 0 4777.1 0.261 + 32508 WGATHHRCRE 10 5 626.791259765625 NaN 0 626.791259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _WGATHHRCRE_ REV__NTN5|p.R249W|1|0.26|ENSG00000142233|chr19:48664654-48664654|G/A|missense_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75997 NaN 2137 1736 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3877 28.568 NaN 163500 35 0 24712 0.327 + 69 ADATEAKNK 9 46 474.2434967709078 946.4724406086157 2 474.24322509765625 MULTI HCD FTMS 0 0 0 3876 96860.5703125 0.6953159902421417 3 -0.09363937377929688 1 Unmodified _ADATEAKNK_ ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF 32.78568957990786 0.09846250359632436 1 {[DA]|[EG]}TAEATR{I|L} 9 5 + 70.098 0 0 7.4062 7.4062 94.615 0 0 0 0.2224777388845922 0.2224777388845922 0.2224777388845922 32.940228147639196 0 2.798455006504028 0 0.5 0 {[DA]|[EG]}TAEATR{I|L};{[DA]|[EG]}T[RD]T[VG]{I|L} 7.4062;3.9259 -;- 107 + NaN NaN 98677.8 NaN 2138 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3878 28.572 NaN 207530 35 0 16124 0.261 + 27839 TDAAEDVLLG 10 56 502.25105088238166 1002.4875488315633 2 502.2620544433594 MULTI HCD FTMS 0 0 0 3876 10470.3134765625 0.17537300127532093 6 -0.1638927459716797 2 Unmodified _TDAAEDVLLG_ ENST00000510731.1_1_5:2788481-2788661:-|nuORF 20.453626601364224 0.3197956946484955 1 VAQ{I|L}TQR 7 9 55.393 0 0 5.5256 0 0 188.02131046379742 0 188.02131046379742 0 11.20075397456759 0 0 0 0 0 0.4247425010840047 0.3054621874040891 VAQ{I|L}TQR 5.5256 - 381 + NaN NaN 132396.7 NaN 2139 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3879 28.576 NaN 87311 35 0 12187 0.261 -1 SPIKDQPVM 9 33 515.7656021053298 1029.5166512774595 2 515.7655639648438 MULTI HCD FTMS 0 0 0 3876 31806.849609375 0.6015011464089601 -1 0.026765823364257812 3 Oxidation (M) _SPIKDQPVM(Oxidation (M))_ ENSG00000112039|ENST00000229769|FANCE 26.020703789607367 0.13554323117744113 1 KDQ[VP]{M(Oxidation (M))|F} 6 -1 35.623 0 0 3.4601 0 0 297.16844374824376 0 297.16844374824376 0 25.165025357721547 0 0 0 1.9247425010840047 0 0 0 KDQ[VP]{M(Oxidation (M))|F} 3.4601 + + 21 NaN NaN 90861.6 NaN 2140 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3880 28.579 NaN 45863 35 0 6996.3 0.262 + 19523 NRTFNLTLTH 10 29 406.21923189935615 1215.6358662982684 3 406.2193603515625 MULTI HCD FTMS 0 0 0 3876 21046.74609375 0.36431462317006513 8 -0.2007465362548828 4 Unmodified _NRTFNLTLTH_ REV__ENSG00000185896|ENST00000332556|LAMP1;REV__ENST00000472564.1_1_13:113960786-113974926:+|nuORF;REV__nc|ENSG00000185896|P11279-2|LAMP1 1.4819007175156935 0.4674597685733628 1 [RN]V 3 -1 7.4473 0 0 0.61262 0 0 0 843.4070204332871 843.4070204332871 7.447274948966937 0 0 0 0 0 0 0 0 [RN]V 0.61262 - 3 NaN NaN 108614.6 NaN 2141 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3881 28.582 NaN 112290 35 0 17085 0.261 + -1 FWFFFCFYSYK 11 25 547.913214192469 1640.7178131776068 3 547.9137573242188 MULTI HCD FTMS 0 0 0 3876 32108.572265625 0.7415620176512412 -3 0.060268402099609375 5 Carbamidomethyl (C) _FWFFFC(Carbamidomethyl (C))FYSYK_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|1|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|35 0 0.41892066650488113 1 YGGSS 5 -1 42.959 0 0 2.6183 0 0 0 1186.527369211303 1186.527369211303 40.19459033015185 0 0 0 0 0.5 0 0 0 YGGSS 2.6183 - 17 + NaN NaN 105347.4 NaN 2142 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3882 28.586 NaN 43400 35 0 7707.9 0.263 -1 MPLCLCFVMPL 11 29 436.8791263998082 NaN 0 436.87896728515625 PEAK HCD FTMS 0 0 0 3876 16080.029296875 0.5266978668767579 53 -0.9309940338134766 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MPLCLCFVMPL_ ENST00000526592.5_2_11:111965727-111965772:+|nuORF 0.5059551277355931 0.3406848944787997 1 T 1 -1 3.4949 0 0 0.4009 0 0 411.5056455224695 356.16868005924067 767.6743255817101 0 0 0 0 0 0 0 0 0 T 0.4009 - 1 + NaN NaN 84802.5 NaN 2143 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3883 28.589 NaN 51146 35 0 7708.5 0.261 -1 MPSASMTRL 9 24 513.2413588795854 1024.4681648259707 2 513.2408447265625 MULTI HCD FTMS 0 0 0 3876 21808.341796875 0.4308847942912315 -39 0.7122249603271484 7 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 12.240655878213236 0.2545997876781172 1 AS[EP] 4 -1 25.445 0 0 2.4838 0 0 622.3087635724625 0 622.3087635724625 0 25.445312593723983 0 0 0 0.5 0 0.4247425010840047 0 AS[EP] 2.4838 - 6 NaN NaN 81895.1 NaN 2144 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3884 28.592 NaN 31568 35 0 5462.7 0.261 + 12129 KKKKKKKKKSF 11 21 469.3284408579681 NaN 0 469.3285217285156 PEAK HCD FTMS 0 0 0 3876 11261.5537109375 0.572138538540684 -1 0.026765823364257812 8 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82547.8 NaN 2145 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3885 28.596 NaN 28358 35 0 5616.8 0.261 + -1 ATWSYPTPC 9 16 541.7323005791485 NaN 0 541.7327880859375 PEAK HCD FTMS 0 0 0 3876 2200.75048828125 0.14388661070912906 9 -0.21087074279785156 9 Carbamidomethyl (C) _ATWSYPTPC(Carbamidomethyl (C))_ REV__ENSG00000151229|ENST00000280871|SLC2A13;REV__SLC2A13|p.K601Nfs*2|1|0.28|ENSG00000151229|chr12:39760170-39760170|T/-|frameshift_variant 3.944395688203298 0.27613285122220627 1 N 1 -1 3.4949 0 0 0.32316 0 0 540.6490971526345 423.73554407291255 964.384641225547 0 0 0 0 0 0 0 0 0 N 0.32316 - 1 + NaN NaN 92797.8 NaN 2146 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3886 28.599 NaN 82647 35 0 36734 0.261 -1 YDMLGVPED 9 14 527.7235985831468 1053.4326442330935 2 527.724365234375 MULTI HCD FTMS 0 0 0 3876 12692.7841796875 0.7592508019869696 -3 0.060268402099609375 10 Oxidation (M) _YDM(Oxidation (M))LGVPED_ ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675|TAF1 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104659.3 NaN 2147 1737 3876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3888 28.604 NaN 1677000 35 0 145490 0.327 + 9211 HPLSDHEATL 10 89 560.2751367728551 1118.5357206125102 2 560.2752685546875 MULTI HCD FTMS 0 0 0 3887 875727.875 0.1493971164391221 16 -0.3062019348144531 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 166.44778350782605 5.805597275734801E-11 1 HP{I|L}SDHEAT{I|L} 10 0 + 73.546 0 0 6.5752 6.5752 84.153 0 0 0 37.800625020341556 12.517346757967545 12.517346757967545 0.22878745280337398 0 2.524227503252014 0 2.305462187404089 0 + + HP{I|L}SDHEAT{I|L};H{I|L}PSDHEAT{I|L};{I|L}HPSDHEAT{I|L};{[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F}AT{I|L};{[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}HAT{I|L};{[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}AHT{I|L};HP{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}NEA[VP];H{I|L}P{[QD]|[EN]|[WG]|[KD]|[RS]}NEA[VP];HP{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}NE{I|L}[PG];{I|L}HP{[QD]|[EN]|[WG]|[KD]|[RS]}NEA[VP] 6.5752;6.5548;6.4454;5.3734;5.1043;3.9577;3.4507;3.4303;3.339;3.3209 +;-;-;-;-;-;-;-;-;- + 2040 + NaN NaN 334551.2 NaN 2148 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3889 28.609 NaN 315060 35 0 88470 0.262 + 27735 TATATNHVL 9 47 464.2482985960435 926.4820442588871 2 464.248046875 MULTI HCD FTMS 0 0 0 3887 154793.5625 0.15951069245255312 9 -0.1873626708984375 2 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 60.07390631473393 0.0174780869009295 1 [TA]TATNHV{I|L} 9 0 + 64.614 0 0 6.9741 6.9741 89.089 0 0 0 49.665088581753906 10.202264589233387 10.202264589233387 9.208187539523742 0 1.4916440611282624 1.6989700043360187 0.4247425010840047 0 + + [TA]TATNHV{I|L};[TA]TATGGHV{I|L};[TA][PG][KQ]AT[PG] 6.9741;5.9802;4.8608 +;-;- + 81 + NaN NaN 135842.5 NaN 2149 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3890 28.612 NaN 343350 35 0 55763 0.261 + 2991 EAAGEVRAM 9 52 467.2264188448312 932.4382847564624 2 467.22613525390625 MULTI HCD FTMS 0 0 0 3887 163068.1875 0.40453892659828194 -3 0.08357620239257812 3 Unmodified _EAAGEVRAM_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 57.72198328787511 0.020768266150574023 1 {[CP]|[EA]}AGEVRAM 9 0 + 62.643 0 0 6.7182 6.7182 87.332 0 0 0 31.61236583892361 14.973024840566467 14.973024840566467 6.522496736287451 0 1.4049471895720984 0 0 0 + + {[CP]|[EA]}AGEVRAM;{[CP]|[EA]}QEVRAM;{[CP]|[EA]}GV{[CP]|[EA]}RAM;{[DA]|[EG]}AV{[CP]|[EA]}RAM;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RAM;{[DA]|[EG]}VA{[CP]|[EA]}RAM 6.7182;6.0187;3.1971;3.0876;2.7157;2.442 +;-;-;-;-;- + 243 + NaN NaN 136083.4 NaN 2150 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3891 28.616 NaN 50733 35 0 5750.9 0.261 + 2149 DGRPELRGPGR 11 35 403.8855781161619 NaN 0 403.894775390625 PEAK HCD FTMS 0 0 0 3887 4665.76513671875 1 0 0 4 Unmodified _DGRPELRGPGR_ ENSG00000125733|ENST00000313244|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 1.0714618166137932 0.3390807148598227 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84787.2 NaN 2151 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3892 28.619 NaN 102030 35 0 21260 0.261 + 17755 MEDVRVNCIGL 11 32 416.8735803479556 1247.598911644067 3 416.8741149902344 MULTI HCD FTMS 0 0 0 3887 9991.9208984375 0.6494695053489988 7 -0.1639862060546875 5 Unmodified _MEDVRVNCIGL_ REV__ENSG00000154415|ENST00000284601|PPP1R3A;REV__PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant 2.9952420565917617 0.40578455234410343 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103138.1 NaN 2152 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3893 28.622 NaN 76389 35 0 36333 0.261 + -1 FNLEEMVD 8 15 527.7235985831468 1053.4326442330935 2 527.7239379882812 MULTI HCD FTMS 0 0 0 3887 12277.2978515625 0.7343974425208596 -2 0.06352615356445312 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))FNLEEM(Oxidation (M))VD_ REV__ENST00000557679.5_1_14:74371659-74389215:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85890.3 NaN 2153 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3894 28.626 NaN 73000 35 0 7403.1 0.261 + 26586 SVSPVVHVR 9 28 490.28762658711145 978.5607002410229 2 490.2872619628906 MULTI HCD FTMS 0 0 0 3887 11281.3046875 0.9081980673525605 1 -0.03339958190917969 7 Unmodified _SVSPVVHVR_ ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;nc|ENSG00000143889|Q8WVV9-5|HNRNPLL 3.5964929083625545 0.32375295897743744 1 S[PA] 3 7 10.458 0 0 1.0687 0 0 705.4284203563134 0 705.4284203563134 0 3.4678748622465623 0 0 0 0 0 0 0 S[PA] 1.0687 - 6 NaN NaN 92061.1 NaN 2154 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3895 28.629 NaN 28944 35 0 5178.2 0.261 + -1 PMIDVCGM 8 19 469.6929111987908 937.3712694643816 2 469.6933898925781 MULTI HCD FTMS 0 0 0 3887 6933.15673828125 0.3881479321728327 9 -0.1873626708984375 8 Carbamidomethyl (C),Oxidation (M) _PMIDVC(Carbamidomethyl (C))GM(Oxidation (M))_ REV__ENSG00000176407|ENST00000409785|KCMF1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82138.5 NaN 2155 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3896 28.632 NaN 33752 35 0 9422.7 0.261 + 29656 VAPLLKRKSL 10 22 562.877341811396 NaN 0 563.2568969726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _VAPLLKRKSL_ REV__nc|ENSG00000196313|Q96HA1-3|POM121 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83636.9 NaN 2156 1738 3887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3898 28.638 NaN 473650 35 0 62276 0.327 + 8243 GSSPVFNQR 9 61 496.25140398358315 990.4882550339663 2 496.7434997558594 MULTI HCD FTMS 0 0 0 3897 26064.36328125 0.4505558720580322 -3 0.09692573547363281 1 Unmodified _GSSPVFNQR_ ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L 18.1463463914782 0.20357593197100715 1 NAE 3 8 13.689 0 0 1.3821 0 0 468.28107678012844 205.0624178522094 673.3434946323379 0 0 0 0 0 0 0 0.28872548999643577 0 NAE 1.3821 - 237 + NaN NaN 155041.5 NaN 2157 1739 3897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3899 28.642 NaN 94797 35 0 15931 0.261 -1 HPASDKIEAYM 11 40 426.5325725466723 1276.575888240217 3 426.5324401855469 MULTI HCD FTMS 0 0 0 3897 26878.546875 0.2477828343292673 6 -0.1305866241455078 2 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 19.625955294349634 0.28608081981942357 1 Y{M(Oxidation (M))|F} 2 -1 23.583 0 0 1.8474 0 0 948.4670758396295 0 948.4670758396295 0 18.098943791441968 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 1.8474 + + 16 + NaN NaN 95212.2 NaN 2158 1739 3897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3900 28.646 NaN 23798 35 0 5374.9 0.261 -1 HPASDKIEAYM 11 20 639.2955947400341 1276.576636546868 2 639.2955322265625 MULTI HCD FTMS 0 0 0 3897 17427.830078125 0.3192233202963956 9 -0.1774463653564453 3 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.498486711656943 0.4079631525365919 1 A{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2109 0 0 971.426561424025 0 971.426561424025 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[ES]|[DT]|[{I|L}C]} 1.2109 - 4 NaN NaN 100851.4 NaN 2159 1739 3897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3901 28.649 NaN 48095 35 0 5301.9 0.262 + 34180 YPDGSKPVKV 10 31 545.3006661814353 1088.5867794296705 2 545.300537109375 MULTI HCD FTMS 0 0 0 3897 21523.9921875 0.7664033028766575 -1 0.03339958190917969 4 Unmodified _YPDGSKPVKV_ ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF 10.150570793230772 0.4161670024087991 1 KV 2 8 19.464 0 0 1.788 0 0 843.4139881818375 0 843.4139881818375 0 15.484550065040281 0 0 0 0 0 0 0 + KV 1.788 + + 2 NaN NaN 91871.7 NaN 2160 1739 3897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3902 28.652 NaN 21616 35 0 4058.2 0.261 + 33685 YKNQTNGKLL 10 21 589.8300967878218 1177.6456406424436 2 589.8301391601562 MULTI HCD FTMS 0 0 0 3897 12216.41796875 0.014071012608018336 91 -1.6961536407470703 5 Unmodified _YKNQTNGKLL_ tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1 1.3295316138638542 0.46826628246186464 1 Q 1 9 3.9794 0 0 0.33791 0 0 748.3546383004499 298.2128084772094 1046.5674467776594 0 0 0 0 0 0 0 0 0 + Q 0.33791 + + 2 + NaN NaN 81783.1 NaN 2161 1739 3897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3903 28.656 NaN 22229 35 0 4409.9 0.261 + 34109 YNNQIFWIY 9 17 630.805490486006 NaN 0 630.8058471679688 PEAK HCD FTMS 0 0 0 3897 2377.272216796875 0.47517087214846687 1 -0.023479461669921875 6 Unmodified _YNNQIFWIY_ tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82897.9 NaN 2162 1739 3897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3905 28.661 NaN 140670 35 0 28159 0.327 + 19565 NSSKDVAVM 9 50 475.7342752034945 949.4539974737891 2 475.7340087890625 MULTI HCD FTMS 0 0 0 3904 96487.2734375 0.8958301916750644 -1 0.023479461669921875 1 Unmodified _NSSKDVAVM_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 29.84058131909904 0.11198220037953927 1 AVM 3 6 36.198 0 0 3.8125 0 0 630.2986927716812 0 630.2986927716812 0 20.74031267727719 0 0 0 1 0 0 0 + AVM 3.8125 + + 21 NaN NaN 97353.9 NaN 2163 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3906 28.666 NaN 243610 35 0 31987 0.261 + 4052 ESGGASVISTR 11 39 532.2726609692813 1062.5307690053626 2 532.2724609375 MULTI HCD FTMS 0 0 0 3904 97636.4921875 0.6076790288082587 -2 0.05687904357910156 2 Unmodified _ESGGASVISTR_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2 36.39500950444726 0.16016733442035713 1 {[ES]|[DT]|[{I|L}C]}NASV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 2 + 45.411 0 0 4.2739 4.2739 84.282 0 0 0 2.4477272448304888 5.764837301042718 2.4477272448304888 9.164539485499247 0 1.079689690656103 0 0 0 {[ES]|[DT]|[{I|L}C]}NASV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ES]|[DT]|[{I|L}C]}GGASV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ES]|[DT]|[{I|L}C]}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ES]|[DT]|[{I|L}C]}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.2739;3.4113;2.4154;1.5488 -;+;-;- + 119 + NaN NaN 115225.4 NaN 2164 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3907 28.669 NaN 58568 35 0 6996.2 0.261 + 9507 HPYSMAMRI 9 27 553.2672343400287 1104.5199157468574 2 553.26708984375 MULTI HCD FTMS 0 0 0 3904 28085.87109375 0.005690278939367739 274 -5.859159469604492 3 Unmodified _HPYSMAMRI_ REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF 6.723162845929126 0.3000504726104499 1 T{I|L} 2 -1 21.198 0 0 1.9192 0 0 872.3756429316463 0 872.3756429316463 0 19.20818753952375 0 0 0 0 0 0.5 0 T{I|L} 1.9192 - 3 NaN NaN 94043.8 NaN 2165 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3908 28.673 NaN 150440 35 0 27017 0.261 + 33453 YGVGWTATT 9 39 478.2283303238516 NaN 0 478.2184143066406 PEAK HCD FTMS 0 0 0 3904 3556.75439453125 0.6197443168524394 3 -0.07025337219238281 4 Unmodified _YGVGWTATT_ REV__ENST00000445902.2_1_6:33238004-33239525:-|nuORF;REV__ENST00000463486.5_1_6:33238004-33239525:-|nuORF;REV__ENST00000478934.5_1_6:33238004-33239739:-|nuORF 8.593279151180031 0.2536050107310812 1 VA 2 -1 15.969 0 0 1.6731 0 0 635.2860541029783 146.02817712955314 781.3142312325314 0 0 0 0 0 0.5 0 0 0 VA 1.6731 - 9 + NaN NaN 104242 NaN 2166 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3909 28.676 NaN 69309 35 0 15664 0.261 + 21943 QEEDGPLK 8 35 458.2246892267179 914.4348255202358 2 458.22412109375 MULTI HCD FTMS 0 0 0 3904 19866.662109375 0.04075591300114991 11 -0.20430755615234375 5 Unmodified _QEEDGPLK_ ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-2|TAF6;nc|ENSG00000106290|P49848-3|TAF6;nc|ENSG00000106290|P49848-4|TAF6 3.944395688203298 0.5361403129012058 1 V 1 8 8.9794 0 0 0.98196 0 0 439.17669060988266 373.1664217584594 812.3431123683421 0 0 0 0 0 0.5 0 0 0 V 0.98196 - 5 + NaN NaN 89250.8 NaN 2167 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3910 28.679 NaN 80411 35 0 11890 0.261 + 34155 YPDDRTSRTL 10 34 408.5385817007833 1222.59391570255 3 408.5386962890625 MULTI HCD FTMS 0 0 0 3904 30167.8828125 1 0 0 6 Unmodified _YPDDRTSRTL_ ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000075391|Q9UJF2|RASAL2;RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant 2.498486711656943 0.462078817294651 1 YPD 3 7 26.198 0 0 2.1428 0 0 0 844.428746609666 844.428746609666 20.713337517843655 0 0 0 0 0 0 0 0 + YPD 2.1428 + + 13 + NaN NaN 94202.7 NaN 2168 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3911 28.683 NaN 76605 35 0 24248 0.261 + 4299 EVPNKIINR 9 18 541.819461284107 1081.6243696350139 2 541.8197631835938 MULTI HCD FTMS 0 0 0 3904 19826.107421875 0.24983977320352288 -6 0.15390777587890625 7 Unmodified _EVPNKIINR_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 10.073929032068715 0.27331982688540024 1 EV[NP]K{I|L} 6 3 23.901 0 0 2.2097 0 0 0 398.2156160943969 398.2156160943969 16.91122510072759 0 0 0 0 0 0 0 0 + EV[NP]K{I|L} 2.2097 + + 10 + NaN NaN 105880.9 NaN 2169 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3912 28.686 NaN 58280 35 0 4761.9 0.261 + -1 MVSLLLCE 8 32 490.74334347518794 979.4721340171759 2 490.7434387207031 MULTI HCD FTMS 0 0 0 3904 17884.9765625 1 0 0 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VSLLLC(Carbamidomethyl (C))E_ REV__ENSG00000187612|ENST00000344514|OR5W2;REV__OR5W2|p.A108S|1|0.22|ENSG00000187612|chr11:55914261-55914261|C/A|missense_variant 2.302733041254933 0.5385759549224092 1 S 1 -1 4.6041 0 0 0.47006 0 0 187.01265284882578 702.4068697565061 889.4195226053318 0 0 0 0 0 0 0 0 0 S 0.47006 + + 4 + NaN NaN 94187.4 NaN 2170 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3913 28.689 NaN 12944 35 0 2401.6 0.261 + 35491 YYFKIQARN 9 12 601.8194815374447 NaN 0 601.820068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YYFKIQARN_ ENSG00000067141|ENST00000261908|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-4|NEO1 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85550.4 NaN 2171 1740 3904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3915 28.695 NaN 60097 35 0 11114 0.327 + 3393 EEVHDLERKY 10 27 439.88612091880964 1316.636533356629 3 439.88568115234375 MULTI HCD FTMS 0 0 0 3914 23070.619140625 0.054095473963478184 17 -0.2865486145019531 1 Unmodified _EEVHDLERKY_ ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-2|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000205531|Q99733-2|NAP1L4 4.715918219556657 0.45034159980724314 1 HD 2 8 10.969 0 0 0.83312 0 0 357.1561674197513 704.3716747253637 1061.527842145115 0 0 0 0 0 0 0 0 0 + HD 0.83312 + + 3 + NaN NaN 81668.5 NaN 2172 1741 3914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3916 28.699 NaN 30031 35 0 5606 0.261 + 14856 LKHFIAEY 8 19 510.77882621954024 1019.5430995058805 2 510.7781677246094 MULTI HCD FTMS 0 0 0 3914 9707.1162109375 0.5056580812712601 5 -0.08384513854980469 2 Unmodified _LKHFIAEY_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1 2.577480529830294 0.5381683276125971 1 T 1 8 1.5938 0 0 0.15632 0 0 491.8167333943555 423.65940271549067 915.4761361098462 0 0 0 0 0 0 0 0 0 T 0.15632 - 3 + NaN NaN 89842.7 NaN 2173 1741 3914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3917 28.703 NaN 43031 35 0 9305.9 0.261 -1 MGLSGDCCCC 10 35 525.1470989230884 1048.2796449129767 2 525.1461791992188 MULTI HCD FTMS 0 0 0 3914 6623.30517578125 0.2764825011175866 15 -0.2429332733154297 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GLSGDCCCC_ ENST00000404569.5_3_22:39905450-39907313:+|nuORF 0 0.4753037046562868 1 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.124 0 0 883.2013500905142 0 883.2013500905142 0 4.793036574208873 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.124 + + 2 + NaN NaN 94490.3 NaN 2174 1741 3914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3919 28.708 NaN 430640 35 0 60026 0.327 + 8244 GSSPVFNQR 9 58 496.25140398358315 990.4882550339663 2 496.2513427734375 MULTI HCD FTMS 0 0 0 3918 145810.953125 1 0 0 1 Unmodified _GSSPVFNQR_ ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L 34.40172386719151 0.0910440009062557 1 [SG]SPV{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 27.346 0 0 2.7609 2.7609 84.425 0 0 0 17.636576733812234 1.8124564711758886 1.8124564711758886 9.208187539523752 0 0.6694451763165201 0 0.5 0 + + [SG]SPV{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}H]|[RQ]};[SG]SPV{M(Oxidation (M))|F}GG{[{M(Oxidation (M))|F}H]|[RQ]};[SG]SG[H{I|L}][PS][H{I|L}] 2.7609;1.8312;1.6068 +;-;- + 191 + NaN NaN 141490.3 NaN 2175 1742 3918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3920 28.713 NaN 206830 35 0 43162 0.261 + 2493 DSAPVETPR 9 42 486.24353781082203 970.4725226884441 2 486.2431945800781 MULTI HCD FTMS 0 0 0 3918 94788.328125 1 0 0 2 Unmodified _DSAPVETPR_ ENSG00000100292|ENST00000216117|HMOX1 41.95555342248728 0.056367691549927025 1 {[DS]|[MA]|[CV]|TT}A[VP]ET[RP] 9 0 + 37.967 0 0 3.9122 3.9122 89.018 0 0 0 30.976818486582125 4.762036441594198 4.762036441594198 37.96651852994231 0 1.5356668758921828 0 0.4247425010840047 0 + + {[DS]|[MA]|[CV]|TT}A[VP]ET[RP] 3.9122 + + 38 + NaN NaN 134735.9 NaN 2176 1742 3918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3921 28.716 NaN 99636 35 0 17244 0.261 + -1 FWFFFCFYSYK 11 35 547.913214192469 1640.7178131776068 3 547.9132080078125 MULTI HCD FTMS 0 0 0 3918 37463.49609375 0.8652364085740786 2 -0.04352760314941406 3 Carbamidomethyl (C) _FWFFFC(Carbamidomethyl (C))FYSYK_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|1|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|35 0 0.41892066650488113 1 YGGSS 5 -1 47.206 0 0 2.8772 0 0 0 1186.5249032184367 1186.5249032184367 47.2062251842808 0 0 0 0 0.9247425010840047 0 0 0 YGGSS 2.8772 - 17 + NaN NaN 94855.5 NaN 2177 1742 3918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3922 28.719 NaN 63874 35 0 7597.4 0.261 -1 SPIKDQPVM 9 25 515.7656021053298 1029.5166512774595 2 515.7653198242188 MULTI HCD FTMS 0 0 0 3918 23312.498046875 0.4408639797107997 4 -0.07039642333984375 4 Oxidation (M) _SPIKDQPVM(Oxidation (M))_ ENSG00000112039|ENST00000229769|FANCE 9.38312468134398 0.279288223203164 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 2.0628 0 0 864.470827158122 0 864.470827158122 0 15.752574989159953 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 2.0628 + + 7 + NaN NaN 96452.7 NaN 2178 1742 3918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3923 28.723 NaN 66400 35 0 11653 0.261 -1 0 33 473.1596809203099 944.3048089074198 2 473.1597900390625 MULTI HCD FTMS 0 0 0 3918 27992.91796875 0.6371410273884364 -5 0.1404743194580078 5 NaN NaN 1 D 1 -1 3.4949 0 0 0.3701 0 0 129.01008342089477 697.2479654327066 826.2580488536014 0 0 0 0 0 0 0 0 0 D 0.3701 - 4 + NaN NaN 110820 NaN 2179 1742 3918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3924 28.726 NaN 45840 35 0 9239.5 0.261 -1 CTCVQMNKA 9 31 556.2397795612837 NaN 0 556.2401733398438 PEAK HCD FTMS 0 0 0 3918 5469.357421875 0.6214575444611813 -6 0.16724014282226562 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))TC(Carbamidomethyl (C))VQMNKA_ ENST00000394288.7_2_4:129029310-129029454:+|nuORF 3.5964929083625545 0.27781873954207675 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97836.2 NaN 2180 1742 3918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3926 28.732 NaN 93966 35 0 18706 0.327 + 25406 SENPGQTHF 9 34 508.7251448415674 1015.4357367499348 2 508.72515869140625 MULTI HCD FTMS 0 0 0 3925 22143.54296875 0.8032535416680688 1 -0.020109176635742188 1 Unmodified _SENPGQTHF_ ENSG00000005812|ENST00000355619|FBXL3 9.38312468134398 0.279288223203164 1 {[ES]|[DT]|[{I|L}C]}N 3 6 14.705 0 0 1.4481 0 0 0 682.2967294378228 682.2967294378228 11.606056125004828 0 0 0 0 0.4247425010840047 0 0 0 + {[ES]|[DT]|[{I|L}C]}N 1.4481 + + 9 + NaN NaN 98240.6 NaN 2181 1743 3925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3927 28.736 NaN 64345 35 0 31633 0.261 -1 LEWETMTE 8 15 527.7235985831468 1053.4326442330935 2 527.7225341796875 MULTI HCD FTMS 0 0 0 3925 11802.5517578125 0.7059993111639343 3 -0.046977996826171875 2 Oxidation (M) _LEWETM(Oxidation (M))TE_ ENSG00000186448|ENST00000344387|ZNF197 0.6903765706972694 0.5409681170271811 1 E 1 -1 5.4846 0 0 0.52064 0 0 774.4498999477404 146.92293726138908 921.3728372091294 0 0 0 0 0 0 0 0 0 E 0.52064 + + 1 + NaN NaN 85653.6 NaN 2182 1743 3925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3928 28.74 NaN 33281 35 0 6120.5 0.261 + -1 RCVGMLVL 8 22 482.25914553277966 962.5037381323593 2 482.2589111328125 MULTI HCD FTMS 0 0 0 3925 5589.95947265625 0.1274442903646274 6 -0.10382461547851562 3 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))VGM(Oxidation (M))LVL_ REV__ENST00000484760.1_1_10:79773365-79779077:-|nuORF 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103593 NaN 2183 1743 3925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3929 28.743 NaN 19574 35 0 5309.4 0.261 -1 LYVAWNIHM 9 13 602.7940472887105 1203.573541644221 2 602.79443359375 MULTI HCD FTMS 0 0 0 3925 9471.8349609375 0.4629317499249222 -4 0.09373283386230469 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LYVAWNIHM(Oxidation (M))_ ENST00000465010.1_1_3:182983305-182987339:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113412.3 NaN 2184 1743 3925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3930 28.746 NaN 14248 35 0 2738.1 0.261 + 28665 TSDEHFRIH 9 12 571.2724365061463 NaN 0 571.2719116210938 PEAK HCD FTMS 0 0 0 3925 1819.518798828125 0.3411809736469222 1 -0.020109176635742188 5 Unmodified _TSDEHFRIH_ REV__ENSG00000167632|ENST00000438773|TRAPPC9;REV__ENST00000521667.5_1_8:140743306-141301208:-|nuORF;REV__ENST00000522504.5_1_8:140743306-140893377:-|nuORF;REV__nc|ENSG00000167632|Q96Q05-2|TRAPPC9;REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94509.8 NaN 2185 1743 3925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3932 28.752 NaN 922840 35 0 78689 0.327 + 9212 HPLSDHEATL 10 76 560.2751367728551 1118.5357206125102 2 560.2749633789062 MULTI HCD FTMS 0 0 0 3931 437963.25 0.07471550069855472 22 -0.37747764587402344 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 131.26759243768294 1.7145119685811063E-05 1 HP{I|L}{[DS]|[MA]|[CV]|TT}HEAT{I|L} 10 0 + 51.652 0 0 4.6178 4.6178 81.016 0 0 0 22.891362274856917 0.5635654983764482 0.5635654983764482 0.6690156004425774 0 2.2302046884880937 0 1.9049471895720984 0 + + HP{I|L}{[DS]|[MA]|[CV]|TT}HEAT{I|L};H{I|L}P{[DS]|[MA]|[CV]|TT}HEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTH{[DS]|[MA]|[CV]|TT}{I|L}C{I|L} 4.6178;4.558;2.1564 +;-;- + 557 + NaN NaN 222740.2 NaN 2186 1744 3931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3933 28.756 NaN 459400 35 0 73386 0.262 + 2992 EAAGEVRAM 9 66 467.2264188448312 932.4382847564624 2 467.2262878417969 MULTI HCD FTMS 0 0 0 3931 304601.4375 0.7556540638347604 3 -0.04012107849121094 2 Unmodified _EAAGEVRAM_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 89.40071534611396 0.0045416704840156395 1 {[CP]|[EA]}AGEVRAM 9 0 + 72.515 0 0 7.7769 7.7769 92.8 0 0 0 44.09887825920684 14.973024840566467 14.973024840566467 12.587418566968154 0 1.7416440611282624 0 0.3494850021680094 0 + + {[CP]|[EA]}AGEVRAM;{[CP]|[EA]}QEVRAM;{[CP]|[EA]}GVEARAM;{[CP]|[EA]}A[DV]ARAM;{[DA]|[EG]}AVEARAM;{[CP]|[EA]}AGEVM{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}AP{[MG]|[TS]}RAM;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VEARAM;{[DA]|[EG]}VAEARAM;{[CP]|[EA]}A{[RE]|[WV]}[VG]AM 7.7769;6.427;5.6061;5.3393;5.1552;4.9022;4.8023;4.7832;4.4055;4.0828 +;-;-;-;-;-;-;-;-;- + 692 + NaN NaN 175897.5 NaN 2187 1744 3931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3934 28.76 NaN 163300 35 0 87910 0.261 + 27736 TATATNHVL 9 29 464.2482985960435 926.4820442588871 2 464.24798583984375 MULTI HCD FTMS 0 0 0 3931 53016.0703125 0.05463166523259079 15 -0.2530021667480469 3 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 12.240655878213236 0.2545997876781172 1 TAT[PG] 5 6 26.07 0 0 2.8139 0 0 481.2612782209 0 481.2612782209 0 26.070006276765483 0 0 0 0.4247425010840047 0 0.5 0 TAT[PG] 2.8139 - 9 NaN NaN 121998 NaN 2188 1744 3931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3935 28.763 NaN 65326 35 0 9420.1 0.261 + 3249 EDSYREQV 8 39 513.2283867391037 1024.4422205450073 2 513.2413940429688 MULTI HCD FTMS 0 0 0 3931 3697.294921875 1 0 0 4 Unmodified _EDSYREQV_ nc|ENSG00000254893|A6NIZ1|RAP1BL 4.3292370932331545 0.5355693454741696 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 4 5 20.445 0 0 1.9958 0 0 0 619.2872408502561 619.2872408502561 17.346368802282015 0 0 0 0 0 0 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 1.9958 - 9 + NaN NaN 94766.9 NaN 2189 1744 3931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3937 28.768 NaN 25899 35 0 4750.6 0.327 + 22521 QSALPHEM 8 20 456.715796251669 911.4170395701381 2 456.7155456542969 MULTI HCD FTMS 0 0 0 3936 10658.8330078125 0.546545509718461 3 -0.0468597412109375 1 Unmodified _QSALPHEM_ REV__ENST00000263674.3_1_11:73078903-73079227:+|nuORF 4.75600775471527 0.5349361699807423 1 M 1 -1 20.485 0 0 2.2475 0 0 762.3660274625194 0 762.3660274625194 0 20.48455006504028 0 0 0 0.5 0 0 0 M 2.2475 + + 1 + NaN NaN 80606.7 NaN 2190 1745 3936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3938 28.773 NaN 31538 35 0 11084 0.261 -1 RMWRIRRRYCQ 11 12 566.2968014652113 1695.8685749958336 3 566.3212280273438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _RM(Oxidation (M))WRIRRRYC(Carbamidomethyl (C))Q_ ENSG00000173389|ENST00000310914|IQCF1 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78899.6 NaN 2191 1745 3936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3940 28.778 NaN 69307 35 0 7260.6 0.327 + 519 APAPAEKTPV 10 31 490.77417180138315 979.5337906695663 2 490.77392578125 MULTI HCD FTMS 0 0 0 3939 13144.109375 0.32356647278338796 -6 0.11723136901855469 1 Unmodified _APAPAEKTPV_ ENSG00000168298|ENST00000304218|H1-4 8.155526934196011 0.43213520406898465 1 [PA]A 3 7 15.458 0 0 1.5781 0 0 0 737.3793429010374 737.3793429010374 15.45757490560675 0 0 0 0 0.5 0 0 0 + [PA]A 1.5781 + + 5 + NaN NaN 93335.1 NaN 2192 1746 3939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3941 28.783 NaN 25248 35 0 5796.6 0.261 + 34181 YPDGSKPVKV 10 15 545.3006661814353 1088.5867794296705 2 545.3001708984375 MULTI HCD FTMS 0 0 0 3939 12118.9384765625 0.43151820512137545 6 -0.09477806091308594 2 Unmodified _YPDGSKPVKV_ ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77048.8 NaN 2193 1746 3939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3942 28.786 NaN 13726 35 0 4215.3 0.261 + 22515 QRTFEKLEK 9 11 589.8300967878218 1177.6456406424436 2 589.8299560546875 MULTI HCD FTMS 0 0 0 3939 17181.10546875 0.019789397537714633 98 -1.8081378936767578 3 Unmodified _QRTFEKLEK_ ENST00000514498.1_1_4:166327046-166327295:-|nuORF 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103563.9 NaN 2194 1746 3939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3944 28.792 NaN 266680 35 0 35245 0.327 + 4053 ESGGASVISTR 11 46 532.2726609692813 1062.5307690053626 2 532.2725219726562 MULTI HCD FTMS 0 0 0 3943 107970.265625 0.6719953235227931 5 -0.08152580261230469 1 Unmodified _ESGGASVISTR_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2 30.43146612281011 0.1985744305751247 1 {[ES]|[DT]|[{I|L}C]}GQSV{I|L}STR 10 2 + 55.896 0 0 5.2606 5.2606 85.947 0 0 0 18.684852299030723 16.532125137753432 16.532125137753432 9.164539485499255 0 0.7302046884880937 0 0 0 {[ES]|[DT]|[{I|L}C]}GQSV{I|L}STR;{[ES]|[DT]|[{I|L}C]}G[AG]SV{I|L}STR 5.2606;4.3981 -;+ + 250 + NaN NaN 125539.5 NaN 2195 1747 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3945 28.796 NaN 66224 35 0 5609.1 0.261 + -1 HPTIHMPLC 9 31 553.2672343400287 1104.5199157468574 2 553.266845703125 MULTI HCD FTMS 0 0 0 3943 19792.76171875 0.004010070927983077 281 -6.077667236328125 2 Carbamidomethyl (C) _HPTIHMPLC(Carbamidomethyl (C))_ REV__ENST00000556674.1_1_14:76447956-76448028:-|nuORF 4.3292370932331545 0.3181982124262546 1 HP 2 -1 18.812 0 0 1.7032 0 0 0 867.3809908502561 867.3809908502561 9.080306233405295 0 0 0 0 0.5 0 0 0 HP 1.7032 + + 4 + NaN NaN 86372.3 NaN 2196 1747 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3946 28.8 NaN 59195 35 0 6284.3 0.261 + 831 AVTSVAKVVR 10 34 515.3245795450995 1028.6346061569989 2 515.3240356445312 MULTI HCD FTMS 0 0 0 3943 18029.98046875 0.809835456376868 1 -0.0234832763671875 3 Unmodified _AVTSVAKVVR_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 7.608950283845883 0.4350283211712914 1 {[VA]|[{I|L}G]}TSV 5 5 22.218 0 0 2.16 0 0 0 568.3581637018186 568.3581637018186 7.614393726401687 0 0 0 0 0 0 0 0 + {[VA]|[{I|L}G]}TSV 2.16 + + 7 + NaN NaN 93667.6 NaN 2197 1747 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3947 28.803 NaN 17901 35 0 3393.7 0.261 + -1 ARMLCAFYVM 10 16 639.2955947400341 1276.576636546868 2 639.2957153320312 MULTI HCD FTMS 0 0 0 3943 8671.5439453125 0.15883555427782658 17 -0.316558837890625 4 Carbamidomethyl (C),Oxidation (M) _ARM(Oxidation (M))LC(Carbamidomethyl (C))AFYVM_ REV__ENST00000604683.1_1_5:68645870-68646032:+|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77305.3 NaN 2198 1747 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3948 28.806 NaN 22657 35 0 4021 0.261 + 33608 YISFQILFH 9 22 584.3130004653332 NaN 0 584.3128662109375 PEAK HCD FTMS 0 0 0 3943 1988.1517333984375 0.3377266438973871 1 -0.0234832763671875 5 Unmodified _YISFQILFH_ ENST00000478436.1_1_3:145795570-145803239:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105625.9 NaN 2199 1747 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3949 28.81 NaN 261970 35 0 25003 0.264 + 14423 LEMERLHYI 9 72 401.8779301372092 NaN 0 401.87750244140625 PEAK HCD FTMS 0 0 0 3943 4747.08544921875 0.6822909294124492 12 -0.21288108825683594 6 Unmodified _LEMERLHYI_ ENSG00000110446|ENST00000227880|SLC15A3 5.230669730166228 0.26989974671959066 1 K 1 9 4.6041 0 0 0.57426 0 0 162.4284461490999 508.19526086978755 670.6237070188874 0 0 0 0 0 0 0 0 0 K 0.57426 - 13 + NaN NaN 118838.4 NaN 2200 1747 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3951 28.815 NaN 204560 35 0 35883 0.327 + 19382 NPEHASVAM 9 38 478.2187694513639 954.4229859695279 2 478.21844482421875 MULTI HCD FTMS 0 0 0 3950 147330.953125 0.6712972640017861 4 -0.05804252624511719 1 Unmodified _NPEHASVAM_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 30.636539890814138 0.10832830463492794 1 VAM 3 6 41.198 0 0 4.3165 0 0 635.2665356294873 0 635.2665356294873 0 41.197887582883936 0 0 0 1.5 0 0 0 + VAM 4.3165 + + 18 + NaN NaN 109441.3 NaN 2201 1748 3950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3952 28.82 NaN 127370 35 0 40392 0.261 + 4300 EVPNKIINR 9 34 541.819461284107 1081.6243696350139 2 541.8192749023438 MULTI HCD FTMS 0 0 0 3950 51914.46484375 0.6542029580770894 2 -0.03357124328613281 2 Unmodified _EVPNKIINR_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 25.399314129420986 0.14091189997036632 1 EV[NP]K{I|L}{I|L}[RN] 9 0 + 57.681 0 0 5.3328 5.3328 91.893 0 0 0 41.4828069691076 7.147642715192504 7.147642715192504 57.680694551991536 0 0 1.154901959985743 0 0.4247425010840047 + + EV[NP]K{I|L}{I|L}[RN] 5.3328 + + 27 + NaN NaN 101982.9 NaN 2202 1748 3950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3953 28.823 NaN 51435 35 0 7601.8 0.261 + 28055 TGLENSKAM 9 28 475.7342752034945 949.4539974737891 2 475.73406982421875 MULTI HCD FTMS 0 0 0 3950 31179.1953125 0.28948133280150906 7 -0.10883140563964844 3 Unmodified _TGLENSKAM_ ENSG00000129158|ENST00000265965|SERGEF;ENST00000527494.5_1_11:17899771-18022052:-|nuORF;nc|ENSG00000129158|Q9UGK8-2|SERGEF 7.289230182591677 0.29575926068275815 1 VM 2 8 25.217 0 0 2.6559 0 0 701.3371449201187 0 701.3371449201187 0 21.721675119240516 0 0 0 0.4247425010840047 0 0 0 VM 2.6559 - 7 NaN NaN 84449.1 NaN 2203 1748 3950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3954 28.827 NaN 67960 35 0 15978 0.261 -1 VQNKKCRN 8 28 523.7793023487012 1045.5440517642023 2 523.7786865234375 MULTI HCD FTMS 0 0 0 3950 16070.2421875 1 0 0 4 Carbamidomethyl (C) _VQNKKC(Carbamidomethyl (C))RN_ ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91109.6 NaN 2204 1748 3950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3955 28.83 NaN 26138 35 0 4576.6 0.261 + -1 REQHLFRC 8 21 573.2847890948464 NaN 0 573.2848510742188 PEAK HCD FTMS 0 0 0 3950 2143.0703125 0.3699434827860697 1 -0.020111083984375 5 Carbamidomethyl (C) _REQHLFRC(Carbamidomethyl (C))_ REV__ENSG00000105290|ENST00000221891|APLP1;REV__nc|ENSG00000105290|P51693|APLP1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108722.6 NaN 2205 1748 3950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3957 28.835 NaN 161020 35 0 19494 0.327 -1 FPDLMMCLPEI 11 47 442.20258366427976 1323.5859215930393 3 442.8559265136719 MULTI HCD FTMS 0 0 0 3956 5061.2060546875 1 0 0 1 Oxidation (M) _FPDLM(Oxidation (M))MCLPEI_ ENSG00000148200|ENST00000487099|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1 2.6312355333042263 0.4073809613003177 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 -1 22.676 0 0 1.7132 0 0 0 961.4150789566294 961.4150789566294 11.706962271689747 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 1.7132 + + 33 NaN NaN 121470.4 NaN 2206 1749 3956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3958 28.84 NaN 41053 35 0 7717.4 0.261 + 9642 HVAGYEHEL 9 26 527.751111900888 1053.4876708685758 2 527.7510986328125 MULTI HCD FTMS 0 0 0 3956 6616.16796875 0.26007602484246967 -6 0.10382461547851562 2 Unmodified _HVAGYEHEL_ CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;ENSG00000110274|ENST00000278935|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164 7.910154910731844 0.2910521888787154 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94881.6 NaN 2207 1749 3956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3959 28.843 NaN 36993 35 0 8221.6 0.261 + 20497 PCTLTQARA 9 30 480.74981549857165 NaN 0 480.7496337890625 PEAK HCD FTMS 0 0 0 3956 4445.86474609375 0.5292865343420926 12 -0.2160491943359375 3 Unmodified _PCTLTQARA_ ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24579934-24582448:+|nuORF 1.6526216038709556 0.28723846860855273 1 Y 1 9 4.6041 0 0 0.47985 0 0 298.53758158132456 494.84626184635005 793.3838434276746 0 0 0 0 0 0 0 0 0 Y 0.47985 - 1 + NaN NaN 96516.6 NaN 2208 1749 3956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3961 28.849 NaN 146850 35 0 18111 0.327 + 8245 GSSPVFNQR 9 42 496.25140398358315 990.4882550339663 2 496.2513427734375 MULTI HCD FTMS 0 0 0 3960 48578.46875 0.3331606282578437 8 -0.13239669799804688 1 Unmodified _GSSPVFNQR_ ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L 10.073929032068715 0.27331982688540024 1 [SG]SG 4 6 16.682 0 0 1.6843 0 0 0 699.3551729791624 699.3551729791624 11.10924374808178 0 0 0 0 0 0 0.5 0 [SG]SG 1.6843 - 25 + NaN NaN 113862.2 NaN 2209 1750 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3962 28.853 NaN 56972 35 0 12211 0.261 -1 CVCVCACM 8 33 473.1596809203099 944.3048089074198 2 473.15924072265625 MULTI HCD FTMS 0 0 0 3960 34064.0859375 0.7753256282712528 3 -0.04500579833984375 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))VC(Carbamidomethyl (C))VCACM_ ENST00000484751.1_1_7:66410067-66416200:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91621.7 NaN 2210 1750 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3963 28.857 NaN 19426 35 0 5530 0.261 -1 0 10 630.8058298743657 2519.1942136310627 4 631.0574340820312 MULTI HCD FTMS 0 0 0 3960 3961.16259765625 0.4233899752253698 8 -0.13239669799804688 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101397 NaN 2211 1750 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3964 28.86 NaN 38576 35 0 10619 0.261 -1 SLCCWLLC 8 21 556.2397795612837 NaN 0 556.2396240234375 PEAK HCD FTMS 0 0 0 3960 5522.65673828125 0.6275136969011021 2 -0.024471282958984375 4 3 Carbamidomethyl (C) _SLC(Carbamidomethyl (C))C(Carbamidomethyl (C))WLLC(Carbamidomethyl (C))_ ENST00000378578.8_1_X:37698233-37698311:-|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105833.8 NaN 2212 1750 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3967 28.874 NaN 677560 35 0 58839 0.327 + 9213 HPLSDHEATL 10 67 560.2751367728551 1118.5357206125102 2 560.27490234375 MULTI HCD FTMS 0 0 0 3966 336204.03125 0.05735561723892653 30 -0.4977703094482422 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 92.4914307365334 0.0008111888129278865 1 EAT{I|L} 4 6 44.412 0 0 3.9706 0 0 686.3128393941986 0 686.3128393941986 0 3.2436313648243953 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.9706 + + 594 NaN NaN 174694.8 NaN 2213 1752 3966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3968 28.878 NaN 82385 35 0 20414 0.261 + 12498 KRKSGQRR 8 43 508.3156621756557 NaN 0 508.30389404296875 PEAK HCD FTMS 0 0 0 3966 3895.4375 0.8504341951072821 4 -0.06431007385253906 2 Unmodified _KRKSGQRR_ ENST00000379826.4_1_13:37453702-37453744:-|nuORF 5.230669730166228 0.38822285293237185 1 V{I|L} 2 8 7.4743 0 0 0.73666 0 0 361.21676028705514 438.22153650455317 799.4382967916083 0 0 0 0 0 0 0 0 0 V{I|L} 0.73666 - 11 + NaN NaN 87523.9 NaN 2214 1752 3966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3969 28.882 NaN 37192 35 0 5077 0.261 + -1 YMRAPPVPCPM 11 27 426.5325725466723 1276.575888240217 3 426.53265380859375 MULTI HCD FTMS 0 0 0 3966 7036.87890625 0.06487024050560618 19 -0.3092384338378906 3 Oxidation (M) _YMRAPPVPCPM(Oxidation (M))_ REV__ENSG00000169855|ENST00000464233|ROBO1;REV__nc|ENSG00000169855|Q9Y6N7-2|ROBO1;REV__nc|ENSG00000169855|Q9Y6N7-3|ROBO1;REV__nc|ENSG00000169855|Q9Y6N7-4|ROBO1;REV__nc|ENSG00000169855|Q9Y6N7-5|ROBO1;REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 1.3296431237094175 0.4130893034510334 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.6046 0 0 1111.529972568145 0 1111.529972568145 0 13.494850021680094 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6046 + + 3 + NaN NaN 109518.9 NaN 2215 1752 3966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3970 28.885 NaN 35184 35 0 5902 0.261 + -1 FWFFFCFYSYK 11 20 547.913214192469 1640.7178131776068 3 547.9132690429688 MULTI HCD FTMS 0 0 0 3966 10877.9326171875 0.25123078014003963 12 -0.2350330352783203 4 Carbamidomethyl (C) _FWFFFC(Carbamidomethyl (C))FYSYK_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|1|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|35 0 0.41892066650488113 1 YG 2 -1 20.969 0 0 1.278 0 0 0 1417.6113710888549 1417.6113710888549 20.969100130080562 0 0 0 0 0 0 0 0 YG 1.278 - 1 + NaN NaN 97963.6 NaN 2216 1752 3966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3971 28.888 NaN 12671 35 0 2888.9 0.261 -1 SHCFPAFLAI 10 10 602.7940472887105 1203.573541644221 2 602.7946166992188 MULTI HCD FTMS 0 0 0 3966 12353.181640625 0.6037562961790596 5 -0.09107780456542969 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))SHC(Carbamidomethyl (C))FPAFLAI_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;XPO1|p.P867S|1|0.14|ENSG00000082898|chr2:61484015-61484015|G/A|missense_variant 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80339.3 NaN 2217 1752 3966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3973 28.894 NaN 183190 35 0 44928 0.327 -1 SAAAVDAGMAM 11 41 513.715185291337 1025.4158176494739 2 513.7150268554688 MULTI HCD FTMS 0 0 0 3972 62039.97265625 0.3933910724472955 -11 0.18570899963378906 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 26.268140514670165 0.22820724222159966 1 V 1 -1 15.797 0 0 1.5405 0 0 626.2041697873377 297.1208590143188 923.3250288016566 0 0 0 0 0 0.8807196863200843 0 0 0 V 1.5405 + + 10 + NaN NaN 105482.9 NaN 2218 1753 3972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3974 28.898 NaN 30352 35 0 6032.1 0.261 -1 MPMVTDNKM 9 19 549.734637977589 1097.454723021978 2 549.7345581054688 MULTI HCD FTMS 0 0 0 3972 18350.236328125 0.9759731818588834 -8 0.12543678283691406 2 2 Oxidation (M) _M(Oxidation (M))PMVTDNKM(Oxidation (M))_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 1.6526216038709556 0.33848895094777925 1 D{I|L}[{M(Oxidation (M))|F}E] 4 -1 9.9215 0 0 0.90405 0 0 575.245446754203 0 575.245446754203 0 9.921525057367406 0 0 0 0 0 0 0 D{I|L}[{M(Oxidation (M))|F}E] 0.90405 - 7 + NaN NaN 81700.7 NaN 2219 1753 3972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3975 28.902 NaN 10932 35 0 5791.9 0.261 + 34989 YSTPFEYLE 9 8 574.7608642578125 NaN 0 574.7608642578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YSTPFEYLE_ ENSG00000142794|ENST00000318249|NBPF3;nc|ENSG00000142794|Q9H094-2|NBPF3;nc|ENSG00000142794|Q9H094-3|NBPF3;nc|ENSG00000142794|Q9H094-4|NBPF3;nc|ENSG00000142794|Q9H094-5|NBPF3 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75420.3 NaN 2220 1753 3972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3976 28.905 NaN 14435 35 0 4751.6 0.261 + 30918 VRELEGEVEN 10 14 587.291015625 NaN 0 587.291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VRELEGEVEN_ ENSG00000133020|ENST00000403437|MYH8 0 0.34018428902965525 1 M 1 10 6.9897 0 0 0.59661 0 0 567.7867307599626 469.7247408502563 1037.511471610219 0 0 0 0 0 0 0 0 0 M 0.59661 - 1 + NaN NaN 95729.6 NaN 2221 1753 3972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3978 28.911 NaN 76662 35 0 7170.4 0.327 + 520 APAPAEKTPV 10 33 490.77417180138315 979.5337906695663 2 490.7738952636719 MULTI HCD FTMS 0 0 0 3977 34953.24609375 0.8604385605916658 2 -0.026996612548828125 1 Unmodified _APAPAEKTPV_ ENSG00000168298|ENST00000304218|H1-4 16.149105407346934 0.3600587335443843 1 [PA]A 3 7 19.265 0 0 1.9667 0 0 0 737.3830820498686 737.3830820498686 10.083559388717378 0 0 0 0 0.8807196863200843 0 0 0 + [PA]A 1.9667 + + 11 + NaN NaN 92545.4 NaN 2222 1754 3977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3979 28.915 NaN 44352 35 0 5107.3 0.261 + 19155 NGTSSVIVSR 10 30 510.2769442847503 1018.5393356363006 2 510.2774963378906 MULTI HCD FTMS 0 0 0 3977 20282.95703125 0.6686198630088478 -6 0.09535598754882812 2 Unmodified _NGTSSVIVSR_ ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11 4.189502756095605 0.45312800054222196 1 S 1 9 6.9897 0 0 0.68625 0 0 272.1076350564044 656.3710421197874 928.4786771761917 0 0 0 0 0 0 0 0 0 + S 0.68625 + + 7 + NaN NaN 86590.2 NaN 2223 1754 3977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3980 28.919 NaN 32644 35 0 9645 0.261 + 1637 CAKEDITYSG 10 19 543.7421298116974 NaN 0 543.7415161132812 PEAK HCD FTMS 0 0 0 3977 1543.7452392578125 0.14950074135875863 11 -0.20539283752441406 3 Unmodified _CAKEDITYSG_ ENSG00000214595|ENST00000356458|EML6;nc|ENSG00000214595|Q6ZMW3-2|EML6 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84653.3 NaN 2224 1754 3977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3982 28.924 NaN 59201 35 0 5222.7 0.327 + 9508 HPYSMAMRI 9 25 553.2671672627225 NaN 0 553.266845703125 PEAK HCD FTMS 0 0 0 3981 21470.49609375 0.5892757954174239 -10 0.15569114685058594 1 Unmodified _HPYSMAMRI_ REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF 6.723162845929126 0.26266733336404485 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91969.6 NaN 2225 1755 3981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3983 28.929 NaN 43304 35 0 4134.8 0.261 + -1 CQAFMRYL 8 29 524.2406675196847 1046.4667821061694 2 524.2411499023438 MULTI HCD FTMS 0 0 0 3981 14758.2548828125 0.8770123906204734 1 -0.013521194458007812 2 Oxidation (M) _CQAFM(Oxidation (M))RYL_ REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78499.4 NaN 2226 1755 3981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3984 28.932 NaN 186560 35 0 20442 0.263 + 22099 QIAMQSLWNI 10 54 401.8779301372092 NaN 0 401.87774658203125 PEAK HCD FTMS 0 0 0 3981 4236.80859375 0.6089496606066109 20 -0.3165416717529297 3 Unmodified _QIAMQSLWNI_ ENST00000544806.1_1_11:71942502-71943381:+|nuORF 6.723162845929126 0.3344301934401713 1 H 1 10 4.6041 0 0 0.57426 0 0 514.719653143756 146.94198023013908 661.661633373895 0 0 0 0 0 0 0 0 0 H 0.57426 - 6 + NaN NaN 114301.5 NaN 2227 1755 3981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3986 28.938 NaN 57366 35 0 7129.4 0.327 + 19383 NPEHASVAM 9 24 478.2187694513639 954.4229859695279 2 478.21844482421875 MULTI HCD FTMS 0 0 0 3985 30037.890625 0.13686434089542174 12 -0.2095813751220703 1 Unmodified _NPEHASVAM_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 19.256988751693697 0.19398022840297344 1 VAM 3 6 36.198 0 0 3.7926 0 0 635.2632313459 0 635.2632313459 0 36.197887582883936 0 0 0 1 0 0 0 + VAM 3.7926 + + 13 NaN NaN 88509.7 NaN 2228 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3987 28.942 NaN 48040 35 0 4747.7 0.261 + -1 QGNVQQEML 9 27 531.7476432664291 1061.4807335996582 2 531.74755859375 MULTI HCD FTMS 0 0 0 3985 23930.52734375 0.8783237422676244 5 -0.11380767822265625 2 Oxidation (M) _QGNVQQEM(Oxidation (M))L_ REV__MAP2K5|p.V89L|1|0.32|ENSG00000137764|chr15:67580766-67580766|G/T|missense_variant 6.2057823575117 0.30397260197431997 1 E{M(Oxidation (M))|F}{I|L} 3 -1 28.06 0 0 2.6434 0 0 654.3091908185562 0 654.3091908185562 0 21.070006276765483 0 0 0 0 0 0.4247425010840047 0 E{M(Oxidation (M))|F}{I|L} 2.6434 + + 8 NaN NaN 94278.8 NaN 2229 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3988 28.946 NaN 23772 35 0 5871.7 0.261 + 13956 KYRLVEEKN 9 23 589.8300967878218 1177.6456406424436 2 589.8294677734375 MULTI HCD FTMS 0 0 0 3985 10064.7958984375 0.011592749228646131 108 -2.0337448120117188 3 Unmodified _KYRLVEEKN_ REV__ENSG00000129518|ENST00000250454|EAPP 1.4819007175156935 0.3397831423917744 1 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.4622213426956 883.4622213426956 15.484550065040281 0 0 0 0 0 0 0 0 KY 1.7806 + + 3 + NaN NaN 83595.6 NaN 2230 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3989 28.949 NaN 69144 35 0 11441 0.261 + 2411 DPNRDGHVSL 10 26 555.2703091838499 1108.5260654344997 2 555.2697143554688 MULTI HCD FTMS 0 0 0 3985 15421.607421875 0.0988567647796182 -6 0.08878135681152344 4 Unmodified _DPNRDGHVSL_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 4.189502756095605 0.45312800054222196 1 S{I|L} 2 8 17.959 0 0 1.6201 0 0 890.4004361637624 0 890.4004361637624 0 17.95880017344075 0 0 0 0 0 0 0 + S{I|L} 1.6201 + + 1 NaN NaN 90952.8 NaN 2231 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3990 28.952 NaN 24256 35 0 5387.6 0.261 -1 SRMRKEWY 8 18 586.2872961957414 NaN 0 586.2883911132812 PEAK HCD FTMS 0 0 0 3985 4923.478515625 0.6970271519787465 1 -0.026767730712890625 5 Oxidation (M) _SRM(Oxidation (M))RKEWY_ ENST00000401878.7_2_7:155570161-155570317:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78879.4 NaN 2232 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3991 28.956 NaN 28403 35 0 5261.5 0.261 + 30964 VRQVVTESGN 10 17 544.7883474890631 NaN 0 544.7885131835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VRQVVTESGN_ REV__ENSG00000160963|ENST00000313669|COL26A1;REV__nc|ENSG00000160963|Q96A83-2|COL26A1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93120.7 NaN 2233 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3992 28.959 NaN 36538 35 0 10344 0.261 + -1 VHEPLLLMY 9 21 565.8003059467559 NaN 0 566.2830810546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _VHEPLLLM(Oxidation (M))Y_ REV__ENSG00000177051|ENST00000317683|FBXO46 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85008.9 NaN 2234 1756 3985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3994 28.964 NaN 29301 35 0 4212.7 0.327 + -1 CYRWWYVHS 9 25 452.8692836477039 NaN 0 452.86944580078125 PEAK HCD FTMS 0 0 0 3993 16490.22265625 0.7664909144026133 1 -0.016847610473632812 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRWWYVHS_ REV__ENSG00000004142|ENST00000540200|POLDIP2 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93311.6 NaN 2235 1757 3993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3995 28.969 NaN 45050 35 0 4876.6 0.261 + 21496 PYFPHKAD 8 29 487.7398753096036 NaN 0 487.7262268066406 PEAK HCD FTMS 0 0 0 3993 1734.1795654296875 0.5336224539738206 -3 0.05376434326171875 2 Unmodified _PYFPHKAD_ REV__ENSG00000140015|ENST00000322893|KCNH5 0.7936320650641473 0.38822285293237185 1 E 1 -1 5.4846 0 0 0.5634 0 0 356.6365976877634 484.7761324518188 841.4127301395822 0 0 0 0 0 0 0 0 0 E 0.5634 - 1 + NaN NaN 89419.7 NaN 2236 1757 3993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3996 28.972 NaN 22705 35 0 4827.5 0.261 + -1 PPSRKGATM 9 18 480.7506457045894 NaN 0 480.7503356933594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _PPSRKGATM(Oxidation (M))_ REV__ENSG00000183495|ENST00000389561|EP400;REV__nc|ENSG00000183495|Q96L91-3|EP400;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__nc|ENSG00000183495|Q96L91-5|EP400;REV__nc|ENSG00000183495|Q96L91|EP400 0.5247636613948944 0.2927039108006614 1 T 1 -1 1.5938 0 0 0.16611 0 0 632.9603845714851 222.44826685123283 855.4086514227179 0 0 0 0 0 0 0 0 0 T 0.16611 + + 1 + NaN NaN 92036.2 NaN 2237 1757 3993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3997 28.976 NaN 27807 35 0 8207.6 0.261 + -1 RHRPQHHC 8 16 564.2742309570312 NaN 0 564.2742309570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _RHRPQHHC(Carbamidomethyl (C))_ REV__ENSG00000179168|ENST00000334928|GGN;REV__ENST00000591809.5_1_19:38875054-38878427:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102461 NaN 2238 1757 3993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 3999 28.981 NaN 43151 35 0 5985.6 0.327 + 9643 HVAGYEHEL 9 21 527.751111900888 1053.4876708685758 2 527.7506713867188 MULTI HCD FTMS 0 0 0 3998 19545.1328125 0.7683028107663805 3 -0.07019233703613281 1 Unmodified _HVAGYEHEL_ CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;ENSG00000110274|ENST00000278935|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164 11.640296217721598 0.25978676193971967 1 E{I|L} 2 7 19.464 0 0 1.8476 0 0 793.3473377912125 0 793.3473377912125 0 19.463950151760656 0 0 0 0 0 0 0 + E{I|L} 1.8476 + + 2 NaN NaN 102515.7 NaN 2239 1758 3998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4000 28.986 NaN 34626 35 0 6319.5 0.262 -1 TEMDSHEEKVF 11 22 456.53035407432236 1366.569232823167 3 456.53070068359375 MULTI HCD FTMS 0 0 0 3998 10531.482421875 0.7236946102986503 -1 0.016847610473632812 2 Oxidation (M) _TEM(Oxidation (M))DSHEEKVF_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 1.214830529360525 0.41359283248740725 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89699.2 NaN 2240 1758 3998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4001 28.989 NaN 45692 35 0 4083.7 0.261 + 10759 ISCVWHCSI 9 27 524.2406675196847 1046.4667821061694 2 524.7523803710938 MULTI HCD FTMS 0 0 0 3998 5714.2060546875 0.5410645588315252 3 -0.07019233703613281 3 Unmodified _ISCVWHCSI_ ENST00000470761.5_1_7:10973306-10978495:-|nuORF;ENST00000486007.1_1_7:10977712-10978495:-|nuORF 1.844237919475145 0.33703635659052655 1 DV[PA]{I|L} 5 7 15.713 0 0 1.5016 0 0 533.1589222638687 0 533.1589222638687 0 15.713337517843655 0 0 0 0 0 0 0 DV[PA]{I|L} 1.5016 - 5 NaN NaN 108542.1 NaN 2241 1758 3998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4002 28.993 NaN 65565 35 0 6291.7 0.261 + 483 ALTVYFFM 8 37 496.25140398358315 990.4882550339663 2 496.74346923828125 MULTI HCD FTMS 0 0 0 3998 3162.66357421875 0.054670686919614006 16 -0.24591445922851562 4 Unmodified _ALTVYFFM_ REV__ENSG00000196944|ENST00000366473|OR2T4;REV__nc|ENSG00000196944|Q8NH00|OR2T4 2.8892196856762586 0.5377058178582064 1 R 1 -1 0.48455 0 0 0.04892 0 0 361.6804680240038 469.69330774478755 831.3737757687913 0 0 0 0 0 0 0 0 0 R 0.04892 - 4 + NaN NaN 90523 NaN 2242 1758 3998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4003 28.996 NaN 14382 35 0 5906.7 0.261 + -1 KLVAHGCAKC 10 10 572.2913948421528 1142.5682367511056 2 572.2908935546875 MULTI HCD FTMS 0 0 0 3998 1684.18359375 0.09387335954697908 7 -0.1347808837890625 5 2 Carbamidomethyl (C) _KLVAHGC(Carbamidomethyl (C))AKC(Carbamidomethyl (C))_ REV__ENSG00000131864|ENST00000254181|USP29;REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82671.9 NaN 2243 1758 3998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4004 28.999 NaN 36367 35 0 8302.4 0.261 -1 WGTSKMASCP 10 20 542.2324114493096 1082.450269965419 2 542.2341918945312 MULTI HCD FTMS 0 0 0 3998 2023.0218505859375 0.4057309868045704 1 -0.02342987060546875 6 Oxidation (M) _WGTSKM(Oxidation (M))ASCP_ ENST00000457967.1_1_1:113711666-113711915:+|nuORF 1.3295316138638542 0.46826628246186464 1 Q 1 -1 5.4846 0 0 0.50668 0 0 804.4508325648316 146.9127138727172 951.3635464375487 0 0 0 0 0 0 0 0 0 Q 0.50668 - 3 + NaN NaN 90203 NaN 2244 1758 3998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4006 29.005 NaN 26976 35 0 7474.9 0.327 + 4301 EVPNKIINR 9 14 541.819461284107 1081.6243696350139 2 541.8190307617188 MULTI HCD FTMS 0 0 0 4005 13677.091796875 0.17235261768252097 13 -0.1944103240966797 1 Unmodified _EVPNKIINR_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90660.9 NaN 2245 1759 4005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4007 29.009 NaN 11490 35 0 6052.9 0.261 + 12598 KTYYKKWW 8 8 601.819071998711 NaN 0 601.81884765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KTYYKKWW_ REV__ENST00000579647.1_1_18:2653155-2653212:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85930.1 NaN 2246 1759 4005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4008 29.013 NaN 18375 35 0 3722.8 0.261 + -1 MHFWFLGW 8 14 570.261009912459 NaN 0 570.26025390625 PEAK HCD FTMS 0 0 0 4005 1482.173828125 0.28585917648043757 -5 0.09404182434082031 3 Oxidation (M) _M(Oxidation (M))HFWFLGW_ REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|139|3|anti-sense 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92941.1 NaN 2247 1759 4005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4010 29.018 NaN 550650 35 0 52894 0.327 + 9214 HPLSDHEATL 10 75 560.2751367728551 1118.5357206125102 2 560.2749633789062 MULTI HCD FTMS 0 0 0 4009 224806.0625 0.038351385692196975 38 -0.6541881561279297 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 111.28704002717404 4.959301662581777E-05 1 EAT{I|L} 4 6 45.962 0 0 4.1091 0 0 686.3138812717385 0 686.3138812717385 0 6.651603310239906 0 0 0 0.7302046884880937 0 1.4247425010840047 0 + EAT{I|L} 4.1091 + + 540 NaN NaN 177623.5 NaN 2248 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4011 29.023 NaN 309260 35 0 96371 0.261 + 25038 SAAAVDAGMAM 11 38 513.715185291337 1025.4158176494739 2 513.7151489257812 MULTI HCD FTMS 0 0 0 4009 134926.40625 0.8555587854663526 -4 0.080535888671875 2 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 41.95555342248728 0.1243556816384599 1 WVAPN 5 9 46.727 0 0 4.5569 0 0 440.1398182599625 0 440.1398182599625 0 28.143265708843046 0 0 0 1.805462187404089 0 0 0 WVAPN 4.5569 - 60 NaN NaN 127553.2 NaN 2249 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4012 29.026 NaN 117540 35 0 22898 0.261 + 18946 NAGNIVVSR 9 44 465.26150709783315 928.5084612624663 2 465.2613830566406 MULTI HCD FTMS 0 0 0 4009 62246.625 0.94890950475862 -1 0.013490676879882812 3 Unmodified _NAGNIVVSR_ ENSG00000105088|ENST00000264833|OLFM2;ENSG00000130558|ENST00000371793|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1 42.312485326615175 0.05472917415473307 1 {[QG]|[NA]}GN{I|L}VV{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 76.22 0 0 8.2089 8.2089 91.8 0 0 0 74.0018312907727 7.147642715192504 7.147642715192504 9.208187539523749 0 2.0356668758921828 1.6989700043360187 0 0 + + {[QG]|[NA]}GN{I|L}VV{[QD]|[EN]|[WG]|[KD]|[RS]};{[QG]|[NA]}GGG{I|L}VV{[QD]|[EN]|[WG]|[KD]|[RS]};{[QG]|[NA]}V{[QG]|[NA]}VV{[QD]|[EN]|[WG]|[KD]|[RS]};{[QG]|[NA]}V[PG][KT]{[QD]|[EN]|[WG]|[KD]|[RS]} 8.2089;7.2172;5.0945;2.2166 +;-;-;- + 72 + NaN NaN 105205 NaN 2250 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4013 29.029 NaN 143870 35 0 15326 0.261 + 26484 SVASTPISQR 10 37 523.2851510273489 1044.5557491214977 2 523.284912109375 MULTI HCD FTMS 0 0 0 4009 46763.12890625 0.5736477038156126 -5 0.09405708312988281 4 Unmodified _SVASTPISQR_ chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1 26.020703789607367 0.2677231329712098 1 [VS]AST 5 5 54.208 0 0 5.1896 0 0 0 596.3160168687484 596.3160168687484 47.21848749616356 0 0 0 0 1.1989700043360187 2 0 0 + [VS]AST 5.1896 + + 37 + NaN NaN 104923.4 NaN 2251 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4014 29.033 NaN 54987 35 0 5683.8 0.261 -1 LADHPDAPM 9 36 491.71859158640234 981.4226302396047 2 491.7183837890625 MULTI HCD FTMS 0 0 0 4009 10123.9541015625 0.6225251647928532 5 -0.09786033630371094 5 Oxidation (M) _LADHPDAPM(Oxidation (M))_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 7.910154910731844 0.2910521888787154 1 A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 15.458 0 0 1.575 0 0 648.2878168624547 0 648.2878168624547 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.575 + + 19 + NaN NaN 91512.6 NaN 2252 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4015 29.036 NaN 12139 35 0 6661.2 0.261 -1 CDREDIPIYP 10 8 639.2948838353226 NaN 0 639.2944946289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))DREDIPIYP_ ENSG00000170160|ENST00000399273|CCDC144A;ENST00000445752.5_1_17:18506915-18528649:-|nuORF;nc|ENSG00000154898|Q8IYA2|CCDC144CP;nc|ENSG00000266302|A2RUR9|CCDC144A;nc|ENSG00000291090|Q3MJ40-2|CCDC144BP;nc|ENSG00000291090|Q3MJ40|CCDC144BP 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77415.4 NaN 2253 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4016 29.046 NaN 10665 35 0 4575.3 0.261 -1 HLYHMVFEL 9 9 602.7947387695312 NaN 0 602.7947387695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _HLYHM(Oxidation (M))VFEL_ ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91201.8 NaN 2254 1760 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4018 29.051 NaN 69619 35 0 20015 0.327 -1 MYWTLDYS 8 23 547.7283882316376 1093.4422235300751 2 547.7280883789062 MULTI HCD FTMS 0 0 0 4017 27377.267578125 1 0 0 1 Oxidation (M) _M(Oxidation (M))YWTLDYS_ tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99008.6 NaN 2255 1761 4017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4019 29.056 NaN 24311 35 0 4710.2 0.261 + 12130 KKKKKKKKKSF 11 18 469.3284408579681 NaN 0 469.32818603515625 PEAK HCD FTMS 0 0 0 4017 9175.5849609375 0.4661617663562725 23 -0.34992218017578125 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83781.6 NaN 2256 1761 4017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4020 29.059 NaN 127620 35 0 18151 0.261 + 8461 HADHSSLTL 9 43 490.7435393058704 979.4725256785408 2 490.7431640625 MULTI HCD FTMS 0 0 0 4017 28240.90625 0.12836306970043848 -10 0.1858196258544922 3 Unmodified _HADHSSLTL_ ENSG00000086758|ENST00000262854|HUWE1;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 28.486842064014134 0.11819662193267319 1 {I|L}T{I|L} 3 6 30.802 0 0 3.1448 0 0 634.25102431465 0 634.25102431465 0 19.83288122256525 0 0 0 0.5 0 0.5 0 + {I|L}T{I|L} 3.1448 + + 16 NaN NaN 98564.8 NaN 2257 1761 4017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4021 29.063 NaN 113960 35 0 9581.3 0.261 + 3642 ELGQGATQAL 10 44 494.25881262231184 986.5030723114237 2 494.25830078125 MULTI HCD FTMS 0 0 0 4017 40912.671875 0.08064192848953658 -11 0.2025890350341797 4 Unmodified _ELGQGATQAL_ ENSG00000139438|ENST00000538780|FAM222A 23.789781309258295 0.28859042913526417 1 {[DA]|[EG]}{I|L}QKNGE{I|L} 9 7 + 59.944 0 0 6.0764 6.0764 86.761 0 0 0 7.147642715192504 50.99153133413289 7.147642715192504 8.010299956639813 0 1.805462187404089 0 0 0.3807196863200844 {[DA]|[EG]}{I|L}QKNGE{I|L};{[QN]|[E{I|L}]|[KN]}GQKNGE{I|L};{[DA]|[EG]}{I|L}[AG]KNGE{I|L};{[DA]|[EG]}{I|L}QKGGGE{I|L};{[DA]|[EG]}{I|L}QKD{[QG]|[NA]}{I|L};{[QN]|[E{I|L}]|[KN]}GQKGGGE{I|L};{[QN]|[E{I|L}]|[KN]}G[AG]KNGE{I|L};{[DA]|[EG]}{I|L}[AG]KGGGE{I|L};{[QN]|[E{I|L}]|[KN]}GQKD{[QG]|[NA]}{I|L};{[DA]|[EG]}{I|L}[AG]KD{[QG]|[NA]}{I|L} 6.0764;5.2644;5.143;5.143;4.9645;4.331;4.331;4.214;4.1525;4.0311 -;-;-;-;-;-;-;-;-;- 222 NaN NaN 104793.2 NaN 2258 1761 4017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4022 29.066 NaN 127840 35 0 21886 0.262 + 5535 FLEHQVSCKI 10 45 401.8779301372092 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 4017 1099.125732421875 0.15797556743763239 26 -0.4001007080078125 5 Unmodified _FLEHQVSCKI_ ENSG00000134874|ENST00000376829|DZIP1;nc|ENSG00000134874|Q86YF9-2|DZIP1 3.5964929083625545 0.337106189561315 1 H 1 9 3.0989 0 0 0.38653 0 0 275.48204328047467 386.17279993228755 661.6548432127622 0 0 0 0 0 0 0 0 0 + H 0.38653 + + 3 + NaN NaN 98642.8 NaN 2259 1761 4017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4023 29.069 NaN 50066 35 0 8320.1 0.261 + 19439 NPQINRDH 8 36 497.2451465748385 NaN 0 497.2447204589844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NPQINRDH_ REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF 2.302733041254933 0.38822285293237185 1 N 1 -1 4.6041 0 0 0.4639 0 0 426.1938321127645 449.21457849674067 875.4084106095052 0 0 0 0 0 0 0 0 0 N 0.4639 + + 2 + NaN NaN 103229.4 NaN 2260 1761 4017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4025 29.075 NaN 1948400 35 0 231320 0.327 + 9374 HPTDERVAL 9 87 519.2721960652692 1036.5298391973383 2 519.2723388671875 MULTI HCD FTMS 0 0 0 4024 901368.4375 0.7405325444394648 -5 0.11048126220703125 1 Unmodified _HPTDERVAL_ ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU 85.64151623876279 0.004640175941193596 1 HPTDE 5 4 68.844 0 0 6.6418 0 0 0 454.27822434131053 454.27822434131053 54.139296900937126 0 0 0 0 1.3494850021680094 1.154901959985743 1.274227503252014 0 + HPTDE 6.6418 + + 343 + NaN NaN 379711.7 NaN 2261 1762 4024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4026 29.079 NaN 187420 35 0 16098 0.261 + 8595 HAVSYGTVAL 10 65 509.271369202864 1016.528185472528 2 509.2713623046875 MULTI HCD FTMS 0 0 0 4024 86557.40625 1 0 0 2 Unmodified _HAVSYGTVAL_ REV__ENST00000424913.5_1_3:176771673-176816307:-|nuORF;REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF 20.453626601364224 0.3197956946484955 1 HAVA 4 -1 51.644 0 0 5.0805 0 0 0 635.3050631158811 635.3050631158811 41.91245036856159 0 0 0 0 1.1747425010840047 1.3979400086720375 0 0 HAVA 5.0805 - 303 + NaN NaN 123560.5 NaN 2262 1762 4024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4027 29.083 NaN 37649 35 0 4547.1 0.261 + 23850 RSAYQEAM 8 28 478.2187694513639 954.4229859695279 2 478.2185363769531 MULTI HCD FTMS 0 0 0 4024 11502.2900390625 0.052408917944259406 18 -0.27277374267578125 3 Unmodified _RSAYQEAM_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 4.3292370932331545 0.5355693454741696 1 AM 2 6 25.217 0 0 2.6421 0 0 734.3354359357437 0 734.3354359357437 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + AM 2.6421 + + 5 NaN NaN 81886.2 NaN 2263 1762 4024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4028 29.086 NaN 29205 35 0 10727 0.261 + 30982 VSARDTALPR 10 18 543.3066852948567 1084.5988176565133 2 543.3064575195312 MULTI HCD FTMS 0 0 0 4024 6575.83251953125 0.7874510843564547 2 -0.033473968505859375 4 Unmodified _VSARDTALPR_ REV__ENSG00000197555|ENST00000381232|SIPA1L1;REV__nc|ENSG00000197555|O43166-3|SIPA1L1;REV__nc|ENSG00000197555|O43166|SIPA1L1 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93628.3 NaN 2264 1762 4024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4030 29.092 NaN 376310 35 0 84229 0.327 + 2412 DPNRDGHVSL 10 44 555.2703091838499 1108.5260654344997 2 555.2702026367188 MULTI HCD FTMS 0 0 0 4029 146802.109375 0.9410420845657674 1 -0.016714096069335938 1 Unmodified _DPNRDGHVSL_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 40.72490554402381 0.1391161235525472 1 D{[HG]|PP}VS{I|L} 6 4 45.648 0 0 4.1179 0 0 482.22310073066564 0 482.22310073066564 0 16.720449851406514 0 0 0 1.6747425010840047 0 0.3494850021680094 0 + D{[HG]|PP}VS{I|L} 4.1179 + + 57 NaN NaN 136590.3 NaN 2265 1763 4029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4031 29.096 NaN 290510 35 0 33079 0.261 -1 CLSMTEHALG 10 62 559.7521831479468 1117.4898133626934 2 559.75244140625 MULTI HCD FTMS 0 0 0 4029 36432.78125 0.4819024467570399 11 -0.13552093505859375 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSMTEHALG_ ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENST00000556069.5_1_14:55251199-55255659:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A 6.2057823575117 0.44245551207394906 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PH{M(Oxidation (M))|F}A{[NV]|[RG]} 10 -1 + 26.149 0 0 2.34 2.34 85.343 0 0 0 6.411962188136549 2.2969624387961503 2.2969624387961503 12.575156255085396 0 0 0 1.079689690656103 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PH{M(Oxidation (M))|F}A{[NV]|[RG]};{[QN]|[E{I|L}]|[KN]}[NS]{[QD]|[EN]|[WG]|[KD]|[RS]}EA{[NV]|[RG]};{[QN]|[E{I|L}]|[KN]}[NS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QA{[NV]|[RG]} 2.34;1.2147;0.49786 -;-;- 284 NaN NaN 127369.7 NaN 2266 1763 4029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4032 29.1 NaN 39995 35 0 5681.4 0.261 -1 MPMVTDNKM 9 30 549.734637977589 1097.454723021978 2 550.2361450195312 MULTI HCD FTMS 0 0 0 4029 6024.46630859375 0.45096715863255427 1 -0.016714096069335938 3 2 Oxidation (M) _M(Oxidation (M))PMVTDNKM(Oxidation (M))_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95847 NaN 2267 1763 4029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4033 29.103 NaN 21184 35 0 2777 0.261 + 12436 KPTYRNSITV 10 21 589.8300967878218 1177.6456406424436 2 589.8305053710938 MULTI HCD FTMS 0 0 0 4029 10283.2744140625 0.011844395329475723 115 -2.157075881958008 4 Unmodified _KPTYRNSITV_ ENSG00000185129|ENST00000331327|PURA 1.1933415558491238 0.46898715808974617 1 Y 1 9 6.9897 0 0 0.59353 0 0 440.55031701138734 571.0059298150999 1011.5562468264873 0 0 0 0 0 0 0 0 0 + Y 0.59353 + + 1 + NaN NaN 85160.2 NaN 2268 1763 4029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4036 29.116 NaN 375290 35 0 47485 0.327 + 22314 QPIKESNSL 9 72 508.2744819784914 1014.5344110237828 2 508.2743225097656 MULTI HCD FTMS 0 0 0 4035 188833.59375 0.766320003302341 -3 0.04114723205566406 1 Unmodified _QPIKESNSL_ ENSG00000162402|ENST00000294383|USP24 49.55428908609986 0.03219431099695407 1 [QP]{I|L}KESNS{I|L} 9 0 + 39.204 0 0 3.8642 3.8642 86.069 0 0 0 4.532326928772456 7.243767623608285 4.532326928772456 11.708187539523749 0 0.2302046884880938 0 0.9436726795685342 0.5994850021680094 + + [QP]{I|L}KESNS{I|L};[QP]{I|L}KESGGS{I|L};[QP]{I|L}{[DS]|[MA]|[CV]|TT}QQS{I|L};[QP]{I|L}{[DS]|[MA]|[CV]|TT}AANS{I|L} 3.8642;2.7102;1.1127;1.0676 +;-;-;- + 338 + NaN NaN 141490 NaN 2269 1765 4035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4037 29.12 NaN 34586 35 0 6179.6 0.261 + 9668 HVGVIDYHD 9 25 527.751111900888 1053.4876708685758 2 527.7506103515625 MULTI HCD FTMS 0 0 0 4035 7277.693359375 0.28608003422354 10 -0.12462425231933594 2 Unmodified _HVGVIDYHD_ tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99192.3 NaN 2270 1765 4035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4038 29.124 NaN 15608 35 0 3729.1 0.261 -1 WSGYMGKMF 9 13 569.738525390625 NaN 0 569.738525390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Oxidation (M) _WSGYM(Oxidation (M))GKM(Oxidation (M))F_ ENSG00000070540|ENST00000262139|WIPI1;nc|ENSG00000070540|Q5MNZ9-2|WIPI1 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86593.7 NaN 2271 1765 4035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4040 29.129 NaN 15226 35 0 3668.2 0.327 + -1 GCMWCMMPS 9 13 588.1954046603302 NaN 0 588.1953735351562 PEAK HCD FTMS 0 0 0 4039 6385.2373046875 0.7331255662298287 1 -0.010068893432617188 1 2 Carbamidomethyl (C),Oxidation (M) _GC(Carbamidomethyl (C))M(Oxidation (M))WC(Carbamidomethyl (C))MMPS_ REV__ENST00000575070.1_1_16:20422873-20423011:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86515.2 NaN 2272 1766 4039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4041 29.134 NaN 16917 35 0 4645.3 0.261 -1 YCGFCQEPCP 10 18 630.7276611328125 NaN 0 630.7276611328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _YCGFC(Carbamidomethyl (C))QEPC(Carbamidomethyl (C))P_ NDUFS8|p.A159P|1|0.19|ENSG00000110717|chr11:68036355-68036355|G/C|missense_variant 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89988 NaN 2273 1766 4039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4043 29.139 NaN 445380 35 0 37554 0.411 + 9215 HPLSDHEATL 10 81 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4042 197887.46875 0.03375913689019764 45 -0.8159103393554688 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 123.45060196383646 3.270871365774944E-05 1 {[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F}AT{I|L} 10 4 + 53.955 0 0 4.8237 4.8237 87.291 0 0 0 6.655462488490684 9.863467363607782 6.655462488490684 11.383026981662823 0 0.7134679910804405 1.3979400086720375 1.4247425010840047 0 {[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F}AT{I|L};{[QN]|[E{I|L}]|[KN]}[HT]{[MG]|[TS]}{M(Oxidation (M))|F}AT{I|L};{[QN]|[E{I|L}]|[KN]}[HT][DG]YAT{I|L};{[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}HT{I|L};{[QN]|[E{I|L}]|[KN]}[HT][DG]PHT{I|L};H{I|L}AEH{[DS]|[MA]|[CV]|TT}D[VP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W[W{M(Oxidation (M))|F}]PH{I|L};{[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}HER{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}S{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}TH{I|L};{[QN]|[E{I|L}]|[KN]}[HT][DG]PTH{I|L} 4.8237;3.8061;3.5369;2.6212;2.4725;2.0865;1.9514;1.7899;1.7118;1.5631 -;-;-;-;-;-;-;-;-;- 1647 NaN NaN 240110.9 NaN 2274 1767 4042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4045 29.147 NaN 338730 35 0 98853 0.327 + 25039 SAAAVDAGMAM 11 47 513.715185291337 1025.4158176494739 2 513.71533203125 MULTI HCD FTMS 0 0 0 4044 131192.828125 0.831884431017527 4 -0.05187416076660156 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 82.5293158979368 0.0031855940243426003 1 [QT]AV{[DA]|[EG]}G{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 10 3 + 65.641 0 0 6.4014 6.4014 93.878 0 0 0 3.838483496748708 48.95873464120562 3.838483496748708 65.64117228912984 0 2.9802046884880937 0 0.8494850021680094 0 [QT]AV{[DA]|[EG]}G{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 6.4014 - 93 NaN NaN 134734.5 NaN 2275 1768 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4046 29.151 NaN 47487 35 0 5046.7 0.261 + 14365 LEEAAAAAR 9 28 451.2401873441617 900.4658217551234 2 451.2401123046875 MULTI HCD FTMS 0 0 0 4044 10000.0283203125 0.714865922877774 3 -0.03534698486328125 2 Unmodified _LEEAAAAAR_ ENST00000321870.2_1_8:65493585-65493660:+|nuORF 3.944395688203298 0.32111559684428237 1 A{[{M(Oxidation (M))|F}C]|[YS]}A{[QV]|[N{I|L}]|[RA]|[KV]} 6 5 9.6658 0 0 1.0734 0 0 263.1572412881297 0 263.1572412881297 0 2.498774732165999 0 0 0 0 0 0 0 A{[{M(Oxidation (M))|F}C]|[YS]}A{[QV]|[N{I|L}]|[RA]|[KV]} 1.0734 - 31 + NaN NaN 86299.3 NaN 2276 1768 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4047 29.155 NaN 26350 35 0 5034.5 0.261 + -1 QGNVQQEML 9 22 531.7476432664291 1061.4807335996582 2 531.7474365234375 MULTI HCD FTMS 0 0 0 4044 8917.310546875 0.32729264416061377 17 -0.2643241882324219 3 Oxidation (M) _QGNVQQEM(Oxidation (M))L_ REV__MAP2K5|p.V89L|1|0.32|ENSG00000137764|chr15:67580766-67580766|G/T|missense_variant 3.2813086475875832 0.32614229037259 1 E{M(Oxidation (M))|F}{I|L} 3 -1 26.198 0 0 2.4681 0 0 654.3105335919937 0 654.3105335919937 0 26.197887582883936 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}{I|L} 2.4681 + + 3 NaN NaN 78685.1 NaN 2277 1768 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4048 29.158 NaN 41125 35 0 6208 0.261 -1 YAEQGDVQM 9 31 528.7186136807501 1055.4226744283 2 528.7183227539062 MULTI HCD FTMS 0 0 0 4044 14143.9697265625 0.5865274511738223 -3 0.031185150146484375 4 Oxidation (M) _YAEQGDVQM(Oxidation (M))_ ENSG00000127580|ENST00000293883|WDR24 17.44264345198275 0.2096557692338702 1 Q[DG]VQ{M(Oxidation (M))|F} 6 -1 41.159 0 0 3.8997 0 0 363.1406422345719 0 363.1406422345719 0 35.67410004652736 0 0 0 1.4247425010840047 0 0 0 Q[DG]VQ{M(Oxidation (M))|F} 3.8997 + + 36 NaN NaN 84077 NaN 2278 1768 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4049 29.162 NaN 20163 35 0 4125.4 0.261 -1 0 15 606.1741368184356 605.1668603518356 1 606.1734619140625 MULTI HCD FTMS 0 0 0 4044 10047.6142578125 0.30021037106166276 -8 0.1290454864501953 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91127.2 NaN 2279 1768 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4051 29.167 NaN 129780 35 0 16139 0.327 + 26485 SVASTPISQR 10 32 523.2851510273489 1044.5557491214977 2 523.2848510742188 MULTI HCD FTMS 0 0 0 4050 57543.578125 0.7058924890786924 4 -0.04028511047363281 1 Unmodified _SVASTPISQR_ chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1 22.65808497894818 0.29917593477267174 1 [VS]AST 5 5 47.065 0 0 4.5057 0 0 0 596.3159448375123 596.3159448375123 43.0854562117252 0 0 0 0 1.086696871556164 1.3979400086720375 0 0 + [VS]AST 4.5057 + + 55 + NaN NaN 108604.1 NaN 2280 1769 4050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4053 29.174 NaN 15403 35 0 1801.3 0.411 -1 0 24 615.1592115025994 614.1519350359994 1 615.1605834960938 MULTI HCD FTMS 0 0 0 4052 6730.7158203125 0.3649768238692435 -8 0.09977912902832031 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79938.4 NaN 2281 1770 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4055 29.182 NaN 760340 35 0 63329 0.327 + 22611 QVAEKDIQG 9 78 494.25881262231184 986.5030723114237 2 494.2588195800781 MULTI HCD FTMS 0 0 0 4054 483387.9375 0.9527936871900908 -1 0.007900238037109375 1 Unmodified _QVAEKDIQG_ REV__ENSG00000067057|ENST00000381125|PFKP;REV__nc|ENSG00000067057|Q01813-2|PFKP 75.76082778847304 0.0072241045649327805 1 {[DA]|[EG]}{I|L}QKGGGE{I|L} 10 -1 + 110.24 0 0 11.175 11.175 91.379 0 0 0 19.489700043360187 16.53212513775344 16.53212513775344 4.2609125905568135 0 2.1989700043360187 1.6989700043360187 0.5451140161145328 1.2447026752325154 {[DA]|[EG]}{I|L}QKGGGE{I|L};{[DA]|[EG]}{I|L}QKGNE{I|L};{[DA]|[EG]}{I|L}QKNGE{I|L};{[DA]|[EG]}{I|L}[AG]KGGGE{I|L};{[DA]|[EG]}{I|L}[AG]KGNE{I|L};{[DA]|[EG]}{I|L}[AG]KNGE{I|L};{[DA]|[EG]}{I|L}QKD{[QG]|[NA]}{I|L};{[QN]|[E{I|L}]|[KN]}GQKGGGE{I|L};{[QN]|[E{I|L}]|[KN]}GQKGNE{I|L};{[QN]|[E{I|L}]|[KN]}GQKNGE{I|L} 11.175;10.743;10.513;10.246;9.8097;9.5795;9.3247;9.1994;8.7675;8.5373 -;-;-;-;-;-;-;-;-;- 1687 NaN NaN 190573.2 NaN 2282 1771 4054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4056 29.187 NaN 435700 35 0 68115 0.261 + 8462 HADHSSLTL 9 56 490.7435393058704 979.4725256785408 2 490.74346923828125 MULTI HCD FTMS 0 0 0 4054 220008.03125 1 0 0 2 Unmodified _HADHSSLTL_ ENSG00000086758|ENST00000262854|HUWE1;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 68.08070601005525 0.009709267492204555 1 [HA]DHSS{I|L}T{I|L} 9 0 + 67.63 0 0 6.9047 6.9047 94.86 0 0 0 4.762036441594191 42.567978389287404 4.762036441594191 67.62964706465603 0 0.805462187404089 0 1.274227503252014 0 + + [HA]DHSS{I|L}T{I|L} 6.9047 + + 160 NaN NaN 155976.8 NaN 2283 1771 4054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4057 29.19 NaN 22847 35 0 4494 0.261 + 12131 KKKKKKKKKSF 11 18 469.3284408579681 NaN 0 469.3285827636719 PEAK HCD FTMS 0 0 0 4054 11752.447265625 0.5970781808109304 33 -0.5888786315917969 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99941.6 NaN 2284 1771 4054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4058 29.194 NaN 32982 35 0 10941 0.261 + -1 CTQCWRTCRP 10 22 456.53035407432236 1366.569232823167 3 456.8644104003906 MULTI HCD FTMS 0 0 0 4054 4870.58642578125 0.2768639274119064 12 -0.20201683044433594 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))TQCWRTC(Carbamidomethyl (C))RP_ REV__ENST00000458098.5_1_2:7001504-7005415:-|nuORF 0.15932191953741626 0.4744603884079788 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83154.7 NaN 2285 1771 4054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4060 29.199 NaN 99629 35 0 12830 0.411 + -1 EGYAKSCSM 9 49 524.7062476268133 1047.3979423204264 2 524.7247924804688 MULTI HCD FTMS 0 0 0 4059 8199.47265625 0.5612418863587217 6 -0.11850547790527344 1 Carbamidomethyl (C),Oxidation (M) _EGYAKSC(Carbamidomethyl (C))SM(Oxidation (M))_ REV__ENSG00000153165|ENST00000409886|RGPD3;REV__ENSG00000196862|ENST00000408999|RGPD4;REV__RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;REV__RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;REV__RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant 7.910154910731844 0.2910521888787154 1 PS{M(Oxidation (M))|F} 3 -1 25.674 0 0 2.4512 0 0 698.2673795644822 0 698.2673795644822 0 7.429928190999391 0 0 0 0 0 0.4247425010840047 0 PS{M(Oxidation (M))|F} 2.4512 - 57 + NaN NaN 109220 NaN 2286 1772 4059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4062 29.207 NaN 1701400 35 0 202380 0.327 + 9375 HPTDERVAL 9 75 519.2721960652692 1036.5298391973383 2 519.2722778320312 MULTI HCD FTMS 0 0 0 4061 811752.1875 0.6669069914750333 6 -0.12042808532714844 1 Unmodified _HPTDERVAL_ ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU 89.40071534611396 0.0045416704840156395 1 HPTDE 5 4 69.826 0 0 6.7365 0 0 0 454.27887903385005 454.27887903385005 50.01075456070612 0 0 0 0 1.3494850021680094 1.2218487496163564 1.305462187404089 0 + HPTDE 6.7365 + + 223 + NaN NaN 349731.4 NaN 2287 1773 4061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4063 29.211 NaN 58935 35 0 5411.4 0.261 + 19637 NVEEADAAM 9 33 483.19767437577974 964.3807958183595 2 483.19744873046875 MULTI HCD FTMS 0 0 0 4061 34591.3046875 0.8160931001712664 -8 0.09131050109863281 2 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 45.69961567697781 0.039180348357221985 1 DAA{M(Oxidation (M))|F} 4 5 48.175 0 0 4.9955 0 0 542.2342942087877 0 542.2342942087877 0 48.17532531436136 0 0 0 1.9247425010840047 0 0 0 + DAA{M(Oxidation (M))|F} 4.9955 + + 21 + NaN NaN 96524 NaN 2288 1773 4061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4064 29.215 NaN 94252 35 0 30369 0.261 + 12540 KSIDQELEHF 10 36 415.8752773132345 1244.6040025399036 3 415.87506103515625 MULTI HCD FTMS 0 0 0 4061 8845.0068359375 0.6236132841600773 3 -0.06005668640136719 3 Unmodified _KSIDQELEHF_ REV__ENSG00000155754|ENST00000439140|C2CD6 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 99667.6 NaN 2289 1773 4061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4065 29.218 NaN 28358 35 0 4645.3 0.261 + 12379 KPEEDSESSS 10 17 547.7283882316376 1093.4422235300751 2 547.7290649414062 MULTI HCD FTMS 0 0 0 4061 5761.54248046875 0.2104498728380162 12 -0.20419883728027344 4 Unmodified _KPEEDSESSS_ ENSG00000070814|ENST00000643257|TCOF1;ENST00000515035.5_1_5:149748314-149754605:+|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428|TCOF1 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99695.5 NaN 2290 1773 4061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4066 29.222 NaN 42390 35 0 9482.7 0.261 + 23851 RSAYQEAM 8 31 478.2187694513639 954.4229859695279 2 478.2178039550781 MULTI HCD FTMS 0 0 0 4061 5769.83154296875 0.02628960205843456 29 -0.5204753875732422 5 Unmodified _RSAYQEAM_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 108099.6 NaN 2291 1773 4061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4068 29.227 NaN 111500 35 0 19799 0.327 + 2413 DPNRDGHVSL 10 31 555.2703091838499 1108.5260654344997 2 555.2702026367188 MULTI HCD FTMS 0 0 0 4067 43018.234375 0.27575876888239537 12 -0.21091842651367188 1 Unmodified _DPNRDGHVSL_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 9.5439744041441 0.42184090036563754 1 VS{I|L} 3 7 23.188 0 0 2.0917 0 0 791.3294183479996 0 791.3294183479996 0 23.187587626244124 0 0 0 0 0 0 0 + VS{I|L} 2.0917 + + 4 NaN NaN 93334.5 NaN 2292 1774 4067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4069 29.232 NaN 40547 35 0 5426.1 0.261 -1 CCTCCCCMGW 10 29 613.6553544260101 NaN 0 613.6552124023438 PEAK HCD FTMS 0 0 0 4067 6605.4619140625 0.5214264157023211 1 -0.013490676879882812 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))CTCC(Carbamidomethyl (C))CCMGW_ nc|ENSG00000112212|Q5TGU0-2|TSPO2 0.4007161486938917 0.3398413315442166 1 G 1 -1 0.088644 0 0 0.0072345 0 0 913.5174216432328 251.73108850650627 1165.248510149739 0 0 0 0 0 0 0 0 0 G 0.0072345 + + 1 + NaN NaN 84404.1 NaN 2293 1774 4067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4070 29.235 NaN 40335 35 0 10398 0.263 + -1 FVRGCETS 8 25 478.2187694513639 954.4229859695279 2 478.21881103515625 MULTI HCD FTMS 0 0 0 4067 9013.669921875 0.041069794424231795 30 -0.5442771911621094 3 Carbamidomethyl (C) _FVRGC(Carbamidomethyl (C))ETS_ REV__RNF4|p.H156R|1|0.27|ENSG00000063978|chr4:2513713-2513713|A/G|missense_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79752.9 NaN 2294 1774 4067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4072 29.241 NaN 237350 35 0 33867 0.327 + 22315 QPIKESNSL 9 63 508.2744819784914 1014.5344110237828 2 508.2743835449219 MULTI HCD FTMS 0 0 0 4071 123062.484375 0.4994092500166924 7 -0.13043975830078125 1 Unmodified _QPIKESNSL_ ENSG00000162402|ENST00000294383|USP24 19.361941925380144 0.1930734562688509 1 [QP]{I|L}KESN{[TV]|[{I|L}S]} 9 0 + 32.101 0 0 3.1641 3.1641 85.506 0 0 0 8.37250545750998 5.6424927368726046 5.6424927368726046 11.950462572043897 0 0 0 0 0.6237125054200234 + + [QP]{I|L}KESN{[TV]|[{I|L}S]};[QP]{I|L}KESGG{[TV]|[{I|L}S]} 3.1641;1.9862 +;- + 165 + NaN NaN 116292.7 NaN 2295 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4073 29.245 NaN 307460 35 0 48822 0.261 + -1 RMPSALSSPI 10 34 537.7824770734434 1073.5504012136867 2 537.7659301757812 MULTI HCD FTMS 0 0 0 4071 8035.1484375 0.825799246081088 1 -0.026742935180664062 2 Oxidation (M) _RM(Oxidation (M))PSALSSPI_ REV__ENSG00000183337|ENST00000378444|BCOR;REV__ENST00000490976.5_1_X:39931586-39937182:-|nuORF;REV__nc|ENSG00000183337|Q6W2J9-2|BCOR;REV__nc|ENSG00000183337|Q6W2J9-3|BCOR;REV__nc|ENSG00000183337|Q6W2J9-4|BCOR 4.5288652416199255 0.4513317009562028 1 TNDP{I|L} 5 -1 28.672 0 0 2.6708 0 0 515.3043080060562 0 515.3043080060562 0 25.573193899842437 0 0 0 0 0 0 0 TNDP{I|L} 2.6708 - 28 NaN NaN 130189.3 NaN 2296 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4074 29.249 NaN 100470 35 0 16299 0.261 -1 QPMQPTPSM 9 34 524.7253810561984 1047.4362091791968 2 524.7247924804688 MULTI HCD FTMS 0 0 0 4071 29453.251953125 0.6714893614368528 2 -0.04689598083496094 3 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 24.020572477871973 0.15282392193088168 1 V 1 -1 5.4846 0 0 0.52362 0 0 300.17987480595303 645.1601046197874 945.3399794257405 0 0 0 0 0 0 0 0 0 V 0.52362 - 2 + NaN NaN 99965.4 NaN 2297 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4075 29.252 NaN 39430 35 0 10693 0.261 + 30596 VPARMQLM 8 21 473.2536201513439 944.4926873694878 2 473.2537841796875 MULTI HCD FTMS 0 0 0 4071 10342.5771484375 0.21954290676593874 -7 0.09343910217285156 4 Unmodified _VPARMQLM_ REV__ENSG00000243978|ENST00000520821|RTL9 9.347437153973935 0.5250182646323369 1 VP 2 -1 24.464 0 0 2.5902 0 0 0 745.3503512018186 745.3503512018186 24.463950151760656 0 0 0 0 0.3494850021680094 0 0 0 VP 2.5902 + + 4 + NaN NaN 86270.9 NaN 2298 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4076 29.255 NaN 25147 35 0 3392.2 0.261 -1 WWFGTCSHS 9 17 584.2388194037366 NaN 0 584.2392578125 PEAK HCD FTMS 0 0 0 4071 8529.068359375 0.7738134306565204 -2 0.033313751220703125 5 Carbamidomethyl (C) _WWFGTC(Carbamidomethyl (C))SHS_ ENSG00000167772|ENST00000301455|ANGPTL4;nc|ENSG00000167772|Q9BY76-2|ANGPTL4;nc|ENSG00000167772|Q9BY76-3|ANGPTL4 0.6014990680409731 0.29233206172879045 1 N 1 -1 3.9794 0 0 0.34115 0 0 710.2953135127481 339.09345422916255 1049.3887677419107 0 0 0 0 0 0 0 0 0 N 0.34115 - 1 + NaN NaN 82366.6 NaN 2299 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4077 29.259 NaN 10010 35 0 5278.6 0.261 -1 YNPKPGHRCC 10 7 644.7872424563758 NaN 0 644.7871704101562 PEAK HCD FTMS 0 0 0 4071 4203.494140625 0.5836299530716761 1 -0.026742935180664062 6 2 Carbamidomethyl (C) _YNPKPGHRC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95555.1 NaN 2300 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4078 29.262 NaN 15225 35 0 4012 0.261 + -1 YMQAFCGVF 9 12 569.7377323211828 NaN 0 569.7379150390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))QAFC(Carbamidomethyl (C))GVF_ REV__ENSG00000170683|ENST00000642047|OR10A3 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103923.4 NaN 2301 1775 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4080 29.267 NaN 38347 35 0 5562.8 0.327 -1 MSSPCHIEM 9 23 533.703814337043 1065.393075740886 2 533.7040405273438 MULTI HCD FTMS 0 0 0 4079 13371.1953125 0.6675402673592548 -3 0.06005668640136719 1 2 Oxidation (M) _M(Oxidation (M))SSPCHIEM(Oxidation (M))_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 3.944395688203298 0.32111559684428237 1 T 1 -1 6.9897 0 0 0.65607 0 0 63.99749554373654 897.3269137018186 961.3244092455552 0 0 0 0 0 0 0 0 0 T 0.65607 - 2 + NaN NaN 89729.6 NaN 2302 1776 4079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4081 29.272 NaN 27559 35 0 5825.2 0.261 -1 CDNMLMLLG 9 18 549.734637977589 1097.454723021978 2 549.734619140625 MULTI HCD FTMS 0 0 0 4079 12653.5830078125 0.6729917505815646 15 -0.2547035217285156 2 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))DNM(Oxidation (M))LM(Oxidation (M))LLG_ ENSG00000086475|ENST00000327347|SEPHS1;nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89196.1 NaN 2303 1776 4079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4082 29.275 NaN 28110 35 0 4900.5 0.261 -1 EMEMTNMMD 9 18 598.1847766185922 1194.3550003039843 2 598.1854858398438 MULTI HCD FTMS 0 0 0 4079 10516.2255859375 1 0 0 3 4 Oxidation (M) _EM(Oxidation (M))EM(Oxidation (M))TNM(Oxidation (M))M(Oxidation (M))D_ tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77613.4 NaN 2304 1776 4079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4083 29.279 NaN 19094 35 0 5555.2 0.262 + -1 YQKYKRYCRQ 10 10 498.25604633014956 NaN 0 498.2558898925781 PEAK HCD FTMS 0 0 0 4079 2047.653564453125 0.17383443806667465 -2 0.040233612060546875 4 Carbamidomethyl (C) _YQKYKRYC(Carbamidomethyl (C))RQ_ REV__ENSG00000171735|ENST00000303635|CAMTA1;REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79337.4 NaN 2305 1776 4079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4084 29.282 NaN 26563 35 0 10760 0.261 + 19262 NLLMWHLY 8 16 545.281569461844 1088.548585990488 2 546.2871704101562 MULTI HCD FTMS 0 0 0 4079 4083.6279296875 0.7084950755971947 -1 0.026742935180664062 5 Unmodified _NLLMWHLY_ ENST00000379568.3_1_6:10694946-10695102:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85352.3 NaN 2306 1776 4079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4086 29.288 NaN 373250 35 0 33049 0.327 + 9216 HPLSDHEATL 10 55 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4085 163038.09375 0.02781391545402304 55 -1.0832157135009766 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 92.4914307365334 0.0008111888129278865 1 EAT{I|L} 4 6 40.266 0 0 3.5999 0 0 686.3163319318375 0 686.3163319318375 0 6.593793813122062 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.5999 + + 122 NaN NaN 130308.1 NaN 2307 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4087 29.292 NaN 122300 35 0 20368 0.261 -1 EDSSGMIGTI 10 42 513.2270806595635 1024.439608385927 2 513.2412719726562 MULTI HCD FTMS 0 0 0 4085 2023.5382080078125 0.4713234590827096 -13 0.17919349670410156 2 Oxidation (M) _EDSSGM(Oxidation (M))IGTI_ tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 3.5964929083625545 0.45626689593999237 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 4 -1 18.94 0 0 1.8488 0 0 0 619.2885225885374 619.2885225885374 11.49288766643714 0 0 0 0 0 0 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 1.8488 - 7 + NaN NaN 97253.4 NaN 2308 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4088 29.295 NaN 28336 35 0 5487.9 0.261 -1 YAEQGDVQM 9 18 528.7186136807501 1055.4226744283 2 528.7183227539062 MULTI HCD FTMS 0 0 0 4085 15198.3349609375 0.6302502648873494 6 -0.09702873229980469 3 Oxidation (M) _YAEQGDVQM(Oxidation (M))_ ENSG00000127580|ENST00000293883|WDR24 13.614867670302875 0.2427269026982664 1 VQ{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.4297 0 0 663.25004775215 0 663.25004775215 0 36.197887582883936 0 0 0 1 0 0 0 VQ{M(Oxidation (M))|F} 3.4297 + + 22 NaN NaN 83890.6 NaN 2309 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4089 29.299 NaN 43304 35 0 5324 0.261 -1 MSSPCHIEM 9 27 533.703814337043 1065.393075740886 2 533.7042846679688 MULTI HCD FTMS 0 0 0 4085 18898.60546875 0.9434893330391212 -2 0.04689598083496094 4 2 Oxidation (M) _M(Oxidation (M))SSPCHIEM(Oxidation (M))_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 10.073929032068715 0.27331982688540024 1 S{[ES]|[DT]|[{I|L}C]} 3 -1 14.265 0 0 1.3389 0 0 744.2947889518391 0 744.2947889518391 0 14.264771768807593 0 0 0 0.3807196863200844 0 0 0 S{[ES]|[DT]|[{I|L}C]} 1.3389 - 4 NaN NaN 90623.4 NaN 2310 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4090 29.302 NaN 59309 35 0 8429.6 0.261 + 17750 MEDKHVCI 8 25 487.72580484663257 NaN 0 487.7393493652344 PEAK HCD FTMS 0 0 0 4085 1306.11083984375 0.7420219186369997 -2 0.04689598083496094 5 Unmodified _MEDKHVCI_ ENSG00000175175|ENST00000308249|PPM1E 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97567.1 NaN 2311 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4091 29.305 NaN 26545 35 0 4904.2 0.261 + 26504 SVIESPSTNR 10 17 545.281569461844 1088.548585990488 2 545.2799072265625 MULTI HCD FTMS 0 0 0 4085 6955.9091796875 0.5202449489790664 -8 0.12049484252929688 6 Unmodified _SVIESPSTNR_ ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant 4.5288652416199255 0.4513317009562028 1 ES 2 8 14.464 0 0 1.3287 0 0 299.1869049375567 570.2641085260374 869.4510134635941 0 0 0 0 0 0.5 0 0 0 + ES 1.3287 + + 3 + NaN NaN 81387.4 NaN 2312 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4092 29.309 NaN 19143 35 0 5443 0.261 + 12024 KHQKYRRY 8 15 589.830123836178 1177.645694739156 2 589.8299560546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KHQKYRRY_ REV__nc|ENSG00000188732|A4D161-3|FAM221A 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78605.9 NaN 2313 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4093 29.312 NaN 24605 35 0 2170.2 0.261 -1 CVNCRNCR 8 31 569.7376098632812 NaN 0 569.7376098632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))VNC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))R_ ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81368.9 NaN 2314 1777 4085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4095 29.318 NaN 42911 35 0 4951.9 0.327 -1 0 16 606.1741368184356 605.1668603518356 1 606.1732788085938 MULTI HCD FTMS 0 0 0 4094 24863.376953125 0.7428871600180953 2 -0.030061721801757812 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112750.6 NaN 2315 1778 4094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4096 29.322 NaN 36579 35 0 9316.9 0.261 + 26505 SVIESPSTNR 10 16 545.281569461844 1088.548585990488 2 545.7828979492188 MULTI HCD FTMS 0 0 0 4094 7253.4384765625 0.7308771731295772 -6 0.11850547790527344 2 Unmodified _SVIESPSTNR_ ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant 4.5288652416199255 0.4513317009562028 1 S 1 9 11.99 0 0 1.1014 0 0 428.2308502500567 570.2649630182249 998.4958132682816 0 0 0 0 0 0.5 0 0 0 + S 1.1014 + + 2 + NaN NaN 85300.4 NaN 2316 1778 4094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4098 29.328 NaN 183130 35 0 16447 0.327 + 108 ADLDVGRIE 9 52 494.25881262231184 986.5030723114237 2 494.2588195800781 MULTI HCD FTMS 0 0 0 4097 125746.6875 0.24785610219134835 7 -0.11031341552734375 1 Unmodified _ADLDVGRIE_ REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 49.93300154707207 0.03166451819912738 1 {[DA]|[EG]}{I|L}QKNGE{I|L} 9 -1 + 91.423 0 0 9.2674 9.2674 93.243 0 0 0 12.60470698072956 12.60470698072956 12.60470698072956 9.208187539523749 0 2.2302046884880937 1.5228787452803376 0 0.7059771852360797 {[DA]|[EG]}{I|L}QKNGE{I|L};{[DA]|[EG]}{I|L}[AG]KNGE{I|L};{[DA]|[EG]}{I|L}QKGGGE{I|L};{[DA]|[EG]}{I|L}QKD{[QG]|[NA]}{I|L};{[DA]|[EG]}{I|L}[AG]KGGGE{I|L};{[QN]|[E{I|L}]|[KN]}GQKNGE{I|L};{[DA]|[EG]}{I|L}[AG]KD{[QG]|[NA]}{I|L};{[DA]|[EG]}{I|L}QKD{I|L}{[QG]|[NA]};{[DA]|[EG]}K[Q{I|L}]NGE{I|L};{[QN]|[E{I|L}]|[KN]}G[AG]KNGE{I|L} 9.2674;8.334;8.334;7.4715;7.405;7.2169;6.5381;6.4753;6.353;6.2834 -;-;-;-;-;-;-;-;-;- 394 NaN NaN 103802.1 NaN 2317 1779 4097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4099 29.332 NaN 149360 35 0 23096 0.261 + 8463 HADHSSLTL 9 39 490.7435393058704 979.4725256785408 2 490.7434387207031 MULTI HCD FTMS 0 0 0 4097 82260.828125 0.3738992056682022 8 -0.12377357482910156 2 Unmodified _HADHSSLTL_ ENSG00000086758|ENST00000262854|HUWE1;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 34.10243960390752 0.09241788333544565 1 {I|L}T{I|L} 3 6 33.188 0 0 3.3883 0 0 634.2460804669937 0 634.2460804669937 0 22.21848749616356 0 0 0 0.5 0 0.5 0 + {I|L}T{I|L} 3.3883 + + 14 NaN NaN 110213.5 NaN 2318 1779 4097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4100 29.336 NaN 56004 35 0 6061.1 0.261 + -1 PCNLSCRQK 9 26 553.2671672627225 NaN 0 553.267578125 PEAK HCD FTMS 0 0 0 4097 18425.919921875 0.5057148456584273 14 -0.24764060974121094 3 Carbamidomethyl (C) _PCNLSC(Carbamidomethyl (C))RQK_ REV__ENST00000261942.6_1_5:175934391-175934511:+|nuORF 2.0597508629832335 0.2852655770354268 1 K 1 -1 4.6041 0 0 0.41684 0 0 677.3369640647044 296.06586633853755 973.402830403242 0 0 0 0 0 0 0 0 0 K 0.41684 + + 1 + NaN NaN 86471.6 NaN 2319 1779 4097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4101 29.339 NaN 46326 35 0 5775.6 0.261 -1 RMWSCRPC 8 26 556.2324141129224 1110.4502752926446 2 556.2323608398438 MULTI HCD FTMS 0 0 0 4097 9142.9267578125 0.6114990220438232 -1 0.010173797607421875 4 Carbamidomethyl (C),Oxidation (M) _RM(Oxidation (M))WSCRPC(Carbamidomethyl (C))_ ENST00000601876.1_1_19:44171370-44174272:-|nuORF 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94535.6 NaN 2320 1779 4097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4102 29.342 NaN 33000 35 0 3561.8 0.261 + 8128 GMDEQYRQI 9 30 570.2611341423099 NaN 0 570.2611694335938 PEAK HCD FTMS 0 0 0 4097 5227.904296875 0.7244248072383832 -2 0.040218353271484375 5 Unmodified _GMDEQYRQI_ ENSG00000160877|ENST00000292431|NACC1 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88267.3 NaN 2321 1779 4097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4104 29.348 NaN 66019 35 0 6596.3 0.327 + 19638 NVEEADAAM 9 29 483.19767437577974 964.3807958183595 2 483.1974182128906 MULTI HCD FTMS 0 0 0 4103 36461.4296875 0.8602139022845586 -1 0.019887924194335938 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 45.69961567697781 0.039180348357221985 1 DAA{M(Oxidation (M))|F} 4 5 55.433 0 0 5.748 0 0 542.2329819529283 0 542.2329819529283 0 55.43305028184122 0 0 0 1.9247425010840047 0 0.4247425010840047 0 + DAA{M(Oxidation (M))|F} 5.748 + + 21 + NaN NaN 90285.8 NaN 2322 1780 4103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4105 29.352 NaN 9089.7 35 0 3184.5 0.261 -1 LCFDYCSCGR 10 8 640.7461983358592 1279.4778437385182 2 640.7464599609375 MULTI HCD FTMS 0 0 0 4103 6101.7197265625 1 0 0 2 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))FDYC(Carbamidomethyl (C))SCGR_ ENST00000265689.8_1_11:67821337-67821454:-|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80044.8 NaN 2323 1780 4103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4107 29.358 NaN 84366 35 0 8124.8 0.327 + 21756 QAEQGQQEL 9 39 515.7438644243696 1029.473175915539 2 515.7438354492188 MULTI HCD FTMS 0 0 0 4106 28906.642578125 0.17597445960404193 -9 0.15872573852539062 1 Unmodified _QAEQGQQEL_ ENSG00000237649|ENST00000428849|KIFC1 23.80106514851385 0.15472041655325736 1 Q{[QG]|[NA]}QE{I|L} 6 3 44.654 0 0 4.3375 0 0 328.1392994611344 0 328.1392994611344 0 40.67410004652736 0 0 0 1.9247425010840047 0 0 0 + Q{[QG]|[NA]}QE{I|L} 4.3375 + + 35 NaN NaN 90385.3 NaN 2324 1781 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4108 29.362 NaN 26536 35 0 4801.7 0.261 + -1 QDMSKFFFKY 10 19 452.87970481910037 NaN 0 452.8697814941406 PEAK HCD FTMS 0 0 0 4106 2505.420166015625 0.6510485120610052 2 -0.026763916015625 2 Oxidation (M) _QDM(Oxidation (M))SKFFFKY_ REV__ENSG00000107404|ENST00000378888|DVL1;REV__nc|ENSG00000107404|O14640-2|DVL1 0.6976657623105312 0.3395871838311286 1 R 1 -1 2.4743 0 0 0.27378 0 0 563.6192901540227 181.00977502994377 744.6290651839664 0 0 0 0 0 0 0 0 0 R 0.27378 - 1 + NaN NaN 100441 NaN 2325 1781 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4109 29.366 NaN 34709 35 0 6939.1 0.261 + 1807 CPSRCHLQLA 10 22 564.275488258751 NaN 0 564.2833251953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _CPSRCHLQLA_ REV__ENST00000479288.5_1_7:23145474-23145636:+|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102293.2 NaN 2326 1781 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4111 29.371 NaN 151550 35 0 38655 0.327 + 18765 NAAHQEALM 9 28 492.7319095021687 983.4492660711375 2 492.73187255859375 MULTI HCD FTMS 0 0 0 4110 106437.8046875 0.6873971165125695 -4 0.05349922180175781 1 Unmodified _NAAHQEALM_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 29.081581746732265 0.1154664336125038 1 V[WE]A{I|L}M 6 5 41.159 0 0 4.1851 0 0 236.08210951972814 0 236.08210951972814 0 34.16895006820745 0 0 0 1.4247425010840047 0 0 0 V[WE]A{I|L}M 4.1851 - 38 NaN NaN 104967.8 NaN 2327 1782 4110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4112 29.376 NaN 96887 35 0 14694 0.261 -1 QPMQPTPSM 9 23 524.7253810561984 1047.4362091791968 2 524.7252197265625 MULTI HCD FTMS 0 0 0 4110 32817.8671875 0.7481974729488471 9 -0.15100669860839844 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 10.073929032068715 0.27331982688540024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88739 NaN 2328 1782 4110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4113 29.379 NaN 133800 35 0 37703 0.262 + -1 EPEMAEWAWGS 11 28 436.8443490331647 1307.511217699694 3 437.1788635253906 MULTI HCD FTMS 0 0 0 4110 15397.96875 0.49259427197392547 -4 0.05349922180175781 3 Oxidation (M) _EPEM(Oxidation (M))AEWAWGS_ REV__ENST00000471836.1_1_22:44577677-44581773:+|nuORF;REV__ENST00000475485.6_1_22:44577677-44582522:+|nuORF 0.4545168274142398 0.41692731010159206 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 113581.7 NaN 2329 1782 4110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4115 29.385 NaN 70540 35 0 21856 0.327 + -1 GPMTASVQL 9 37 473.2401834497899 NaN 0 473.2532653808594 PEAK HCD FTMS 0 0 0 4114 1573.4515380859375 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GPMTASVQL_ REV__AluSx_dup91179|chr16:18786126-18786367:+|15.584162195696909|0.0045621159872568|11.74|522.0|12|3|anti-sense 3.5964929083625545 0.27781873954207675 1 PS 2 -1 15.217 0 0 1.6111 0 0 99.04218073780267 658.3211763971311 757.3633571349338 0 0 0 0 0 0 0 0.4247425010840047 0 PS 1.6111 - 3 + NaN NaN 97708.2 NaN 2330 1783 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4116 29.389 NaN 73113 35 0 12125 0.261 + -1 RENVDPLM 8 36 495.23935808552335 NaN 0 495.239013671875 PEAK HCD FTMS 0 0 0 4114 14972.6455078125 0.6396050915471947 -1 0.013484954833984375 2 Oxidation (M) _RENVDPLM(Oxidation (M))_ REV__ENSG00000152404|ENST00000282251|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 14.838274106304384 0.38780017429789254 1 {I|L} 1 -1 11.99 0 0 1.213 0 0 165.0476115794467 707.3122042291624 872.359815808609 0 0 0 0 0 0.5 0 0 0 {I|L} 1.213 + + 3 + NaN NaN 86493 NaN 2331 1783 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4117 29.393 NaN 32490 35 0 6344.8 0.261 + 2027 DDNRRMDY 8 16 542.7272659594602 1083.4399789857202 2 542.7269287109375 MULTI HCD FTMS 0 0 0 4114 7886.728515625 0.7242651018637786 1 -0.01678466796875 3 Unmodified _DDNRRMDY_ REV__ENSG00000107263|ENST00000683357|RAPGEF1;REV__nc|ENSG00000107263|Q13905-2|RAPGEF1;REV__nc|ENSG00000107263|Q13905-3|RAPGEF1;REV__nc|ENSG00000107263|Q13905-4|RAPGEF1;REV__nc|ENSG00000107263|Q13905|RAPGEF1 0.7936320650641473 0.540814922690045 1 S 1 -1 2.2185 0 0 0.20476 0 0 804.4155476886484 188.96254907779533 993.3780967664437 0 0 0 0 0 0 0 0 0 S 0.20476 - 2 + NaN NaN 86791.1 NaN 2332 1783 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4118 29.396 NaN 33123 35 0 9536.1 0.261 + 31275 VWCRWSES 8 27 526.7348019959084 1051.4550510586166 2 527.2359619140625 MULTI HCD FTMS 0 0 0 4114 7856.69140625 0.7202761548073413 -7 0.11718177795410156 4 Unmodified _VWCRWSES_ REV__ENST00000359479.7_1_3:155572111-155572216:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84866 NaN 2333 1783 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4120 29.401 NaN 95908 35 0 9008.8 0.327 + 4730 EYSKQMQRF 9 48 406.197326802208 1215.570151006824 3 406.1971740722656 MULTI HCD FTMS 0 0 0 4119 30118 0.7285297400305615 -1 0.01678466796875 1 Unmodified _EYSKQMQRF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2 3.876331618118854 0.3216315731786804 1 S[C(Carbamidomethyl (C))N] 3 8 10.458 0 0 0.8603 0 0 836.4333628745309 0 836.4333628745309 0 1.5051499783199063 0 0 0 0 0 0 0 S[C(Carbamidomethyl (C))N] 0.8603 - 25 NaN NaN 98847.7 NaN 2334 1784 4119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4121 29.406 NaN 10552 35 0 3843.4 0.261 -1 EMEMTNMMD 9 6 598.1847766185922 1194.3550003039843 2 598.6868286132812 MULTI HCD FTMS 0 0 0 4119 3803.13232421875 0.38527633660526733 10 -0.20392417907714844 2 4 Oxidation (M) _EM(Oxidation (M))EM(Oxidation (M))TNM(Oxidation (M))M(Oxidation (M))D_ tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90546.5 NaN 2335 1784 4119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4123 29.411 NaN 324590 35 0 32629 0.327 + 9217 HPLSDHEATL 10 56 560.2751367728551 1118.5357206125102 2 560.2749633789062 MULTI HCD FTMS 0 0 0 4122 138218.921875 0.02357982308767926 63 -1.248941421508789 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 92.4914307365334 0.0008111888129278865 1 EAT{I|L} 4 6 43.008 0 0 3.845 0 0 686.3150828696625 0 686.3150828696625 0 2.575156255085389 0 0 0 0.6861818737241735 0 1.5 0 + EAT{I|L} 3.845 + + 103 NaN NaN 134789.8 NaN 2336 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4124 29.416 NaN 87541 35 0 12021 0.261 + -1 EDTDTIMKG 9 32 513.2270806595635 1024.439608385927 2 513.241455078125 MULTI HCD FTMS 0 0 0 4122 2852.05859375 0.6643028120710576 -5 0.06388282775878906 2 Oxidation (M) _EDTDTIM(Oxidation (M))KG_ REV__ENSG00000134775|ENST00000590592|FHOD3 3.944395688203298 0.32111559684428237 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 4 -1 16.682 0 0 1.6284 0 0 0 619.2890108697874 619.2890108697874 16.682437647924218 0 0 0 0 0 0 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 1.6284 - 5 + NaN NaN 92231.2 NaN 2337 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4125 29.419 NaN 58808 35 0 7633.8 0.261 + 19721 NYARGHYTI 9 29 547.7725214593536 1093.530489985507 2 547.772216796875 MULTI HCD FTMS 0 0 0 4122 25838.201171875 0.3042308344007003 -6 0.083770751953125 3 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 13.042465956692817 0.2476723265019929 1 YT{I|L} 3 6 30.445 0 0 2.7841 0 0 698.3263717520703 0 698.3263717520703 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 + YT{I|L} 2.7841 + + 21 NaN NaN 94475.9 NaN 2338 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4126 29.423 NaN 27347 35 0 4071.5 0.261 + -1 VPRCSVPVCL 10 18 565.2963470016159 1128.5781410700317 2 565.2958984375 MULTI HCD FTMS 0 0 0 4122 3603.780029296875 0.23141772085695783 -6 0.083770751953125 4 Carbamidomethyl (C) _VPRCSVPVC(Carbamidomethyl (C))L_ REV__ENSG00000221864|ENST00000360770|KRTAP12-2 1.6526216038709556 0.46655611578153744 1 S 1 -1 3.4949 0 0 0.30967 0 0 455.2377002514755 583.2851656549436 1038.5228659064192 0 0 0 0 0 0 0 0 0 S 0.30967 + + 1 + NaN NaN 82463.1 NaN 2339 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4127 29.426 NaN 15238 35 0 4085 0.261 -1 0 16 624.2358957542378 623.2286192876378 1 624.23583984375 MULTI HCD FTMS 0 0 0 4122 7898.583984375 0.5521861160400879 56 -1.1185493469238281 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81796.9 NaN 2340 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4128 29.429 NaN 39736 35 0 9201.7 0.261 + -1 PYCFCSYSG 9 15 542.1993436253238 1082.3841343174474 2 542.1994018554688 MULTI HCD FTMS 0 0 0 4122 6471.791015625 0.2669412968846106 -3 0.04044532775878906 6 Carbamidomethyl (C) _PYCFC(Carbamidomethyl (C))SYSG_ REV__ENSG00000119681|ENST00000261978|LTBP2 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94221.8 NaN 2341 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4129 29.433 NaN 35053 35 0 6903.9 0.261 + -1 PCYPCKRE 8 20 526.7348019959084 1051.4550510586166 2 526.734375 MULTI HCD FTMS 0 0 0 4122 4263.888671875 0.3221568923165282 -4 0.05372428894042969 7 Carbamidomethyl (C) _PCYPC(Carbamidomethyl (C))KRE_ REV__ENSG00000011451|ENST00000673675|WIZ;REV__ENST00000595214.2_1_19:15547509-15549737:-|nuORF;REV__nc|ENSG00000011451|O95785|WIZ 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86127.3 NaN 2342 1785 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4131 29.438 NaN 255480 35 0 72855 0.327 + 18790 NADPQAVTM 9 38 481.7160340118904 961.4175150905808 2 481.7158508300781 MULTI HCD FTMS 0 0 0 4130 115471.3046875 0.0314291699487237 -11 0.19742774963378906 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 71.70789743142352 0.008535567138151097 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 75.78 0 0 7.8821 7.8821 93.934 0 0 0 3.67931555708239 3.67931555708239 3.67931555708239 17.319393642848482 0 2.8494850021680094 0 0 1.1421590589602533 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};{[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AVT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}YA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{M(Oxidation (M))|F} 7.8821;6.0807;5.8279 +;-;- + 86 NaN NaN 118013.1 NaN 2343 1786 4130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4132 29.443 NaN 56339 35 0 6605.9 0.261 + 8762 HHRDAGLPA 9 22 487.2513916294015 972.488230325603 2 487.7399597167969 MULTI HCD FTMS 0 0 0 4130 1550.2747802734375 0.2672297452837184 -2 0.03671836853027344 2 Unmodified _HHRDAGLPA_ ENST00000325222.8_1_7:148396099-148427112:+|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92966.8 NaN 2344 1786 4130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4133 29.446 NaN 123410 35 0 41222 0.261 + 31298 VWGHCSLP 8 30 449.7164613791676 897.4183698251352 2 449.716064453125 MULTI HCD FTMS 0 0 0 4130 16879.140625 0.611668508299806 7 -0.1373271942138672 3 Unmodified _VWGHCSLP_ REV__ENSG00000134333|ENST00000422447|LDHA;REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF;REV__nc|ENSG00000134333|P00338-2|LDHA;REV__nc|ENSG00000134333|P00338-3|LDHA;REV__nc|ENSG00000134333|P00338-4|LDHA;REV__nc|ENSG00000134333|P00338-5|LDHA 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114907.3 NaN 2345 1786 4130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4135 29.452 NaN 27917 35 0 3104.4 0.327 -1 0 28 606.1741368184356 605.1668603518356 1 606.1732788085938 MULTI HCD FTMS 0 0 0 4134 9056.5732421875 0.2705992829561683 11 -0.22081565856933594 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85484.5 NaN 2346 1787 4134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4136 29.456 NaN 36806 35 0 3649.5 0.261 -1 MSSPCHIEM 9 29 533.703814337043 1065.393075740886 2 533.7039184570312 MULTI HCD FTMS 0 0 0 4134 8972.056640625 0.44791874987019337 8 -0.18015289306640625 2 2 Oxidation (M) _M(Oxidation (M))SSPCHIEM(Oxidation (M))_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 3.944395688203298 0.32111559684428237 1 S{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.98157 0 0 744.2921045337577 0 744.2921045337577 0 10.45757490560675 0 0 0 0 0 0 0 S{[ES]|[DT]|[{I|L}C]} 0.98157 - 2 NaN NaN 78700.1 NaN 2347 1787 4134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4137 29.46 NaN 17520 35 0 4514 0.261 + -1 IQKSNKKYQ 9 17 589.830123836178 1177.645694739156 2 590.3320922851562 MULTI HCD FTMS 0 0 0 4134 4901.5478515625 0.47047328861924037 1 -0.013479232788085938 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IQKSNKKYQ_ REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95207.6 NaN 2348 1787 4134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4139 29.465 NaN 66631 35 0 8405 0.327 + 9509 HPYSMAMRI 9 32 553.2671672627225 NaN 0 553.2670288085938 PEAK HCD FTMS 0 0 0 4138 24566.21875 0.6742405033910086 23 -0.4666156768798828 1 Unmodified _HPYSMAMRI_ REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF 6.723162845929126 0.26266733336404485 1 CH 2 -1 10.969 0 0 0.99311 0 0 245.21760981665744 616.2457979791624 861.4634077958199 0 0 0 0 0 0 0 0 0 CH 0.99311 - 13 + NaN NaN 85206.8 NaN 2349 1788 4138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4140 29.469 NaN 51193 35 0 6646.1 0.261 + 33369 YGHPGYPAL 9 18 487.7404716905516 973.4663904479032 2 488.24237060546875 MULTI HCD FTMS 0 0 0 4138 14545.4404296875 0.6234548026451222 -9 0.1372528076171875 2 Unmodified _YGHPGYPAL_ ENSG00000111077|ENST00000314250|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2 5.230669730166228 0.3113646817964458 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83350.2 NaN 2350 1788 4138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4141 29.473 NaN 50691 35 0 5483.5 0.261 + 2414 DPNRDGHVSL 10 30 555.2703091838499 1108.5260654344997 2 555.270751953125 MULTI HCD FTMS 0 0 0 4138 4082.345947265625 0.026168965531142976 26 -0.5368461608886719 3 Unmodified _DPNRDGHVSL_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 2.498486711656943 0.462078817294651 1 V{[TV]|[{I|L}S]} 3 7 10.458 0 0 0.94338 0 0 791.328905174025 0 791.328905174025 0 10.45757490560675 0 0 0 0 0 0 0 + V{[TV]|[{I|L}S]} 0.94338 + + 2 NaN NaN 88372.3 NaN 2351 1788 4138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4142 29.476 NaN 35466 35 0 7321.6 0.261 + 12508 KRMFFPTY 8 25 545.281569461844 1088.548585990488 2 545.2800903320312 MULTI HCD FTMS 0 0 0 4138 6679.50927734375 0.4995725035261338 3 -0.057079315185546875 4 Unmodified _KRMFFPTY_ REV__ENSG00000031698|ENST00000234677|SARS1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83115.9 NaN 2352 1788 4138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4144 29.482 NaN 89362 35 0 11748 0.327 + 7344 FVDEHEPSM 9 39 553.7267127748356 1105.4388726164711 2 553.7267456054688 MULTI HCD FTMS 0 0 0 4143 40769.10546875 0.3942175608099308 -4 0.0702972412109375 1 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 48.345845343767074 0.03388484103555672 1 PS{M(Oxidation (M))|F} 3 6 37.809 0 0 3.4203 0 0 756.3067442940021 0 756.3067442940021 0 32.12241759892164 0 0 0 1.2887254899964358 0 0.3494850021680094 0 + PS{M(Oxidation (M))|F} 3.4203 + + 27 NaN NaN 89432.6 NaN 2353 1789 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4145 29.486 NaN 29826 35 0 5006.8 0.261 + 12060 KIWRPNRV 8 20 534.8243459385208 1067.6341389438414 2 534.8240966796875 MULTI HCD FTMS 0 0 0 4143 5701.7314453125 0.19858077318634945 7 -0.16298484802246094 2 Unmodified _KIWRPNRV_ ENSG00000197562|ENST00000248139|RAB40C;ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C 2.302733041254933 0.5385759549224092 1 K{I|L} 2 6 20.969 0 0 1.9641 0 0 0 823.4262789361936 823.4262789361936 12.016675202793719 0 0 0 0 0 0 0 0 + K{I|L} 1.9641 + + 5 + NaN NaN 86586.2 NaN 2354 1789 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4146 29.49 NaN 79070 35 0 17050 0.263 -1 MNNLKHYII 9 40 401.8779507256867 NaN 0 401.8780517578125 PEAK HCD FTMS 0 0 0 4143 1675.2076416015625 0.3701605862364889 2 -0.040264129638671875 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))NNLKHYII_ ENST00000549041.1_1_12:51634351-51634513:+|nuORF 1.1933415558491238 0.28946407562688115 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100004 NaN 2355 1789 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4147 29.493 NaN 18880 35 0 2776.1 0.261 + 21106 PNPGRGGRRAC 11 20 570.7937465749313 NaN 0 570.7936401367188 PEAK HCD FTMS 0 0 0 4143 1796.517578125 0.24632852287899912 -7 0.11074256896972656 4 Unmodified _PNPGRGGRRAC_ REV__ENST00000545106.1_1_11:73371703-73372760:+|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92360.4 NaN 2356 1789 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4149 29.499 NaN 337550 35 0 34589 0.327 + 21757 QAEQGQQEL 9 59 515.7438644243696 1029.473175915539 2 515.74365234375 MULTI HCD FTMS 0 0 0 4148 164266.125 1 0 0 1 Unmodified _QAEQGQQEL_ ENSG00000237649|ENST00000428849|KIFC1 133.0521902211835 0.0004198702180815479 1 [QA]EQ{[QG]|[NA]}QE{I|L} 9 0 + 84.112 0 0 8.1704 8.1704 87.671 0 0 0 1.7609125905568135 16.478174818886373 1.7609125905568135 1.7609125905568135 0 1.9247425010840047 0 0.9876954943324545 1.9124379954164592 + + [QA]EQ{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ{[QG]|[NA]}QE{I|L};[QA]EQ{[QG]|[NA]}[AG]E{I|L};[QA]E[AG]{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ{[QG]|[NA]}[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A[AG]{[QG]|[NA]}QE{I|L};{[QN]|[E{I|L}]|[KN]}[CS][YR]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[CS][R{I|L}][Y{M(Oxidation (M))|F}] 8.1704;7.9994;7.276;7.276;7.1049;7.1049;0.91713;0.41591 +;-;-;-;-;-;-;- + 341 NaN NaN 139482.3 NaN 2357 1790 4148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4150 29.503 NaN 243720 35 0 36664 0.261 + 18766 NAAHQEALM 9 55 492.7319095021687 983.4492660711375 2 492.7318420410156 MULTI HCD FTMS 0 0 0 4148 119838.6875 0.7739427591165378 4 -0.10661888122558594 2 Unmodified _NAAHQEALM_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 30.636539890814138 0.10832830463492794 1 A{I|L}M 3 6 29.425 0 0 2.992 0 0 650.2789173810562 0 650.2789173810562 0 1.8765315847925024 0 0 0 0.9247425010840047 0 0 0 + A{I|L}M 2.992 + + 32 NaN NaN 118729.6 NaN 2358 1790 4148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4151 29.507 NaN 42347 35 0 5557.3 0.261 -1 MSSPCHIEM 9 34 533.703814337043 1065.393075740886 2 533.70361328125 MULTI HCD FTMS 0 0 0 4148 13270.435546875 0.6625099615928369 11 -0.21932029724121094 3 2 Oxidation (M) _M(Oxidation (M))SSPCHIEM(Oxidation (M))_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 6.723162845929126 0.3000504726104499 1 E{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.8269 0 0 771.3033924787125 0 771.3033924787125 0 16.365006360318688 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.8269 + + 4 NaN NaN 98910 NaN 2359 1790 4148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4152 29.51 NaN 32580 35 0 5990.7 0.261 + 19254 NLEEYEEW 8 24 556.2324141129224 1110.4502752926446 2 556.2332763671875 MULTI HCD FTMS 0 0 0 4148 1894.30517578125 0.12669529059203938 10 -0.19972610473632812 4 Unmodified _NLEEYEEW_ ENSG00000155313|ENST00000400183|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;nc|ENSG00000155313|Q9UHP3|USP25 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85383.3 NaN 2360 1790 4148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4153 29.513 NaN 36261 35 0 5603.4 0.261 + -1 WIMVITMPF 9 27 585.2888001770002 1168.5630474208003 2 585.28857421875 MULTI HCD FTMS 0 0 0 4148 8799.1484375 0.6167296298915027 -4 0.06058692932128906 5 2 Oxidation (M) _WIM(Oxidation (M))VITM(Oxidation (M))PF_ REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 -1 1.5938 0 0 0.13639 0 0 587.5350455670879 430.9770601861938 1018.5121057532817 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.13639 + + 1 + NaN NaN 88834 NaN 2361 1790 4148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4154 29.517 NaN 45220 35 0 6422.3 0.261 -1 0 22 563.0478205261642 NaN 0 562.7003173828125 PEAK HCD FTMS 0 0 0 4148 1909.59423828125 0.9887314144309797 -1 0.016832351684570312 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101881.1 NaN 2362 1790 4148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4156 29.522 NaN 180150 35 0 40555 0.326 -1 GQRCCCCW 8 50 508.1717423388874 1014.3289317445748 2 508.1716003417969 MULTI HCD FTMS 0 0 0 4155 83786.578125 0.3038414861969432 -7 0.12073707580566406 1 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 2.302733041254933 0.5385759549224092 1 AV[{M(Oxidation (M))|F}T] 4 -1 18.188 0 0 1.7931 0 0 578.1259632794937 0 578.1259632794937 0 -0.5225622685225808 -0.5225622685225808 0 0 0.5 0 0 0 AV[{M(Oxidation (M))|F}T] 1.7931 - 15 NaN NaN 117516.8 NaN 2363 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4157 29.526 NaN 69362 35 0 12025 0.261 -1 QPMQPTPSM 9 23 524.7253810561984 1047.4362091791968 2 524.72509765625 MULTI HCD FTMS 0 0 0 4155 25289.1875 0.5765550232842831 18 -0.35637664794921875 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86542 NaN 2364 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4158 29.53 NaN 101130 35 0 21256 0.262 + -1 SCMRAFYQDM 10 22 436.8443490331647 1307.511217699694 3 436.84442138671875 MULTI HCD FTMS 0 0 0 4155 23328.177734375 0.41385699152703875 4 -0.10959434509277344 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))MRAFYQDM_ REV__EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;REV__ENSG00000110321|ENST00000339995|EIF4G2;REV__ENST00000532383.5_1_11:10823583-10825134:-|nuORF;REV__nc|ENSG00000110321|P78344-2|EIF4G2 0.15932191953741626 0.4744603884079788 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96074.2 NaN 2365 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4159 29.533 NaN 103900 35 0 14326 0.261 + 4125 ETGYVVER 8 36 476.74055362429465 951.4665543153893 2 476.739990234375 MULTI HCD FTMS 0 0 0 4155 25012.35546875 0.7269364478677338 -1 0.023431777954101562 4 Unmodified _ETGYVVER_ ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1 3.5964929083625545 0.5366564765791996 1 VV{[RE]|[WV]} 4 4 16.198 0 0 1.7024 0 0 450.17575890738556 0 450.17575890738556 0 1.5051499783199063 0 0 0 0 0 0 0 + VV{[RE]|[WV]} 1.7024 + + 12 + NaN NaN 86279 NaN 2366 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4160 29.537 NaN 78733 35 0 24009 0.261 + 23519 RNKDTMSRLK 10 31 416.900827714331 NaN 0 416.914794921875 PEAK HCD FTMS 0 0 0 4155 8611.896484375 0.8005005294410528 13 -0.24934005737304688 5 Unmodified _RNKDTMSRLK_ REV__CXCR4|p.Y76N|1|0.58|ENSG00000121966|chr2:136115702-136115702|A/T|missense_variant 0.5059551277355931 0.3397512615639078 1 T 1 -1 6.9897 0 0 0.84032 0 0 217.468695368312 510.2462862604125 727.7149816287244 0 0 0 0 0 0 0 0 0 T 0.84032 + + 1 + NaN NaN 88526.3 NaN 2367 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4161 29.54 NaN 34631 35 0 6753.9 0.261 + 30811 VPVLMQCR 8 24 473.2536201513439 944.4926873694878 2 473.2533264160156 MULTI HCD FTMS 0 0 0 4155 17099.2578125 0.36296763464448256 9 -0.17629432678222656 6 Unmodified _VPVLMQCR_ REV__nc|ENSG00000185842|Q0VDD8|DNAH14 2.302733041254933 0.5385759549224092 1 VP 2 -1 20.969 0 0 2.2201 0 0 0 745.3541353815061 745.3541353815061 15.484550065040281 0 0 0 0 0 0 0 0 VP 2.2201 + + 4 + NaN NaN 96016.9 NaN 2368 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4162 29.543 NaN 25063 35 0 4762.4 0.261 + 12132 KKKKKKKKKSF 11 18 469.3284408579681 NaN 0 469.3284912109375 PEAK HCD FTMS 0 0 0 4155 13920.314453125 0.7072157689486954 53 -1.0645828247070312 7 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91585.8 NaN 2369 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4163 29.547 NaN 40680 35 0 10552 0.261 + 3110 EALNQVTQR 9 25 529.7832597631282 1057.5519665930562 2 529.7831420898438 MULTI HCD FTMS 0 0 0 4155 12514.2998046875 0.9820937442449351 -1 0.023431777954101562 8 Unmodified _EALNQVTQR_ ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD;PRKCD-SLC4A8|1|fusion;PRKCD-SLC4A8|2|fusion;PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant 2.9952420565917617 0.3283108881486655 1 N 1 8 5.4846 0 0 0.51861 0 0 313.16178212215624 627.3248995416624 940.4866816638187 0 0 0 0 0 0 0 0 0 + N 0.51861 + + 1 + NaN NaN 95060.5 NaN 2370 1791 4155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4165 29.552 NaN 262950 35 0 24682 0.327 + 9218 HPLSDHEATL 10 48 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4164 108184.03125 0.01845594136592931 70 -1.3727054595947266 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 74.92900055777586 0.011744908545316337 1 EAT{I|L} 4 6 39.769 0 0 3.5555 0 0 686.3158436505875 0 686.3158436505875 0 1.3721842261166728 0 0 0 0.4247425010840047 0 1.5 0 + EAT{I|L} 3.5555 + + 143 NaN NaN 117726.5 NaN 2371 1792 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4166 29.556 NaN 336540 35 0 41715 0.261 + 22024 QGCWACLGF 9 57 492.70720567342755 983.3998584136551 2 492.70697021484375 MULTI HCD FTMS 0 0 0 4164 143637.03125 0.4262747826815984 -6 0.11401176452636719 2 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 1 {[QG]|[NA]}D 3 7 40.176 0 0 4.0854 0 0 0 680.2697979490645 680.2697979490645 17.98332479720628 0 0 0 0 1 1.5228787452803376 0 0.75 {[QG]|[NA]}D 4.0854 - 64 NaN NaN 137911.4 NaN 2372 1792 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4167 29.56 NaN 77343 35 0 26687 0.261 + 33460 YHFFPPTL 8 23 511.26153052994823 1020.5085081266965 2 511.2613525390625 MULTI HCD FTMS 0 0 0 4164 21888.4375 0.6508551748970596 2 -0.05319404602050781 3 Unmodified _YHFFPPTL_ REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF 5.760428011301431 0.5334459684533844 1 T{I|L} 2 -1 22.959 0 0 2.2497 0 0 788.367967674025 0 788.367967674025 0 22.95880017344075 0 0 0 0 0 0.5 0 T{I|L} 2.2497 + + 1 NaN NaN 93854 NaN 2373 1792 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4168 29.563 NaN 35837 35 0 4580.7 0.261 -1 KCLLECIAY 9 23 585.2888001770002 1168.5630474208003 2 585.7910766601562 MULTI HCD FTMS 0 0 0 4164 9340.7978515625 0.954569945994065 1 -0.0233154296875 4 2 Carbamidomethyl (C) _KC(Carbamidomethyl (C))LLEC(Carbamidomethyl (C))IAY_ ENST00000504768.2_1_5:93246475-93410459:-|nuORF 1.6526216038709556 0.33848895094777925 1 Q 1 -1 6.9897 0 0 0.59814 0 0 148.12064214945798 889.3617511213164 1037.4823932707743 0 0 0 0 0 0 0 0 0 Q 0.59814 - 1 + NaN NaN 104510.9 NaN 2374 1792 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4169 29.567 NaN 40143 35 0 7599 0.261 + 10847 IVEFLGMSGT 10 24 527.269839207577 NaN 0 527.269775390625 PEAK HCD FTMS 0 0 0 4164 8018.2958984375 1 0 0 5 Unmodified _IVEFLGMSGT_ ENSG00000162753|ENST00000367714|SLC9C2 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89801.5 NaN 2375 1792 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4170 29.57 NaN 16967 35 0 4572.6 0.261 + 2444 DPVDPEDSVDL 11 14 600.7673588004293 1199.5201646676585 2 600.7681274414062 MULTI HCD FTMS 0 0 0 4164 7835.7177734375 0.14563319400264818 -5 0.10055160522460938 6 Unmodified _DPVDPEDSVDL_ ENSG00000166049|ENST00000370357|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;nc|ENSG00000166049|Q8IV76-2|PASD1 1.1933415558491238 0.4136870758253112 1 H 1 11 5.4846 0 0 0.45723 0 0 621.7561398647273 437.6816805475219 1059.4378204122493 0 0 0 0 0 0 0 0 0 H 0.45723 - 1 + NaN NaN 91153.4 NaN 2376 1792 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4172 29.575 NaN 3666800 35 0 1104100 0.327 + 18791 NADPQAVTM 9 75 481.7160340118904 961.4175150905808 2 481.7162780761719 MULTI HCD FTMS 0 0 0 4171 2431541.25 0.661820903387219 -4 0.09357261657714844 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 189.73149822037072 4.1025052375754644E-13 1 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 122.19 0 0 12.71 12.71 90.64 0 0 0 13.481362441963327 13.481362441963327 13.481362441963327 2.498774732165998 0 3.1989700043360187 1.2218487496163564 0.9247425010840047 2.190614065464281 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DPGAAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]NAVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]GGAVT{M(Oxidation (M))|F};[QP]DGQAVT{M(Oxidation (M))|F};[QP]DGGAAVT{M(Oxidation (M))|F};{[QG]|[NA]}DPG[Q{I|L}]T{M(Oxidation (M))|F};[QP]DANAVT{M(Oxidation (M))|F};[QP]DNAAVT{M(Oxidation (M))|F} 12.71;12.45;10.35;9.8017;8.844;8.7012;8.4413;8.3337;8.2078;7.8947 +;-;-;-;-;-;-;-;-;- + 808 NaN NaN 635302.6 NaN 2377 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4173 29.58 NaN 855060 35 0 55571 0.261 -1 0 71 593.7776135262044 1185.5406741192087 2 593.7774047851562 MULTI HCD FTMS 0 0 0 4171 438097.3125 0.45855775844372015 -3 0.07674026489257812 2 NaN NaN 1 C(Carbamidomethyl (C))ETVTKSY 8 -1 73.824 0 0 6.227 0 0 199.08530143371837 0 199.08530143371837 0 22.871381606472596 0 0 0 2.004432191740108 0 1.4674165578762484 0 C(Carbamidomethyl (C))ETVTKSY 6.227 - 638 + NaN NaN 220680.3 NaN 2378 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4174 29.583 NaN 139080 35 0 20757 0.261 + 19722 NYARGHYTI 9 39 547.7725214593536 1093.530489985507 2 547.7723999023438 MULTI HCD FTMS 0 0 0 4171 69724.5625 0.8209689864435504 2 -0.056285858154296875 3 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 39.94969957227396 0.06557568441294001 1 [YN]{[QV]|[N{I|L}]|[RA]|[KV]}{[HG]|PP}YT{I|L} 9 0 + 45.876 0 0 4.1952 4.1952 80.793 0 0 0 11.183174735333168 38.42863739093026 11.183174735333168 1.4612803567823818 0 1.274227503252014 2 0 0 + + [YN]{[QV]|[N{I|L}]|[RA]|[KV]}{[HG]|PP}YT{I|L};[YN]{[NV]|[RG]}[HA]YT{I|L} 4.1952;4.0616 +;- + 64 NaN NaN 94105.2 NaN 2379 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4175 29.586 NaN 57483 35 0 4752.5 0.261 -1 MPSASMTRL 9 31 513.2413588795854 1024.4681648259707 2 513.2409057617188 MULTI HCD FTMS 0 0 0 4171 28126.8125 0.5557238569998557 17 -0.342742919921875 4 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 12.240655878213236 0.2545997876781172 1 SAS[EP] 5 -1 25.445 0 0 2.4838 0 0 535.279100486525 0 535.279100486525 0 25.445312593723983 0 0 0 0.5 0 0.4247425010840047 0 SAS[EP] 2.4838 - 9 NaN NaN 89548.4 NaN 2380 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4176 29.59 NaN 80597 35 0 12893 0.261 + -1 WLWPSCRLMT 10 27 436.8790195219607 NaN 0 436.8791198730469 PEAK HCD FTMS 0 0 0 4171 19847.669921875 0.7922067088994719 4 -0.08911895751953125 5 Oxidation (M) _WLWPSCRLM(Oxidation (M))T_ REV__ENST00000565544.1_1_16:84219097-84220645:-|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93862.1 NaN 2381 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4177 29.593 NaN 40996 35 0 9044.2 0.261 + -1 PYCFCSYSG 9 20 542.1993436253238 1082.3841343174474 2 542.1994018554688 MULTI HCD FTMS 0 0 0 4171 7157.75927734375 0.29523535906350207 5 -0.09694862365722656 6 Carbamidomethyl (C) _PYCFC(Carbamidomethyl (C))SYSG_ REV__ENSG00000119681|ENST00000261978|LTBP2 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83657.7 NaN 2382 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4178 29.596 NaN 35341 35 0 6799.8 0.261 + 26621 SWLPHLATE 9 22 527.269839207577 NaN 0 527.2700805664062 PEAK HCD FTMS 0 0 0 4171 7704.91162109375 0.9609163491453566 1 -0.029878616333007812 7 Unmodified _SWLPHLATE_ ENST00000490577.5_1_13:50656484-50730996:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96634.5 NaN 2383 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4179 29.6 NaN 32722 35 0 6197.5 0.261 -1 RNMTMQRTM 9 25 600.7673588004293 1199.5201646676585 2 600.7662963867188 MULTI HCD FTMS 0 0 0 4171 22031.501953125 0.4094733999973573 -4 0.09357261657714844 8 2 Oxidation (M) _RNMTM(Oxidation (M))QRTM(Oxidation (M))_ ENSG00000136448|ENST00000258960|NMT1;ENST00000590310.1_1_17:43174544-43177067:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1 1.844237919475145 0.33703635659052655 1 S 1 -1 6.9897 0 0 0.58271 0 0 213.06424533347723 896.3935640924436 1109.457809425921 0 0 0 0 0 0 0 0 0 S 0.58271 - 1 + NaN NaN 89023.7 NaN 2384 1793 4171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4181 29.605 NaN 114110 35 0 14051 0.327 + -1 QGGSAMSDTM 10 40 500.68928691224284 999.3640208912857 2 500.6889343261719 MULTI HCD FTMS 0 0 0 4180 43278.9765625 0.698527586637575 -1 0.029878616333007812 1 Oxidation (M) _QGGSAMSDTM(Oxidation (M))_ REV__AMER1|p.S339I|1|0.41|ENSG00000184675|chrX:64192271-64192271|C/A|missense_variant;REV__ENSG00000184675|ENST00000374869|AMER1;REV__nc|ENSG00000184675|Q5JTC6-2|AMER1 4.897010918128616 0.4493830473644964 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.797 0 0 733.275194236525 0 733.275194236525 0 12.272437815030626 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.797 + + 21 NaN NaN 103189.9 NaN 2385 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4182 29.609 NaN 128630 35 0 13586 0.261 -1 MLDILMDYCH 10 40 442.8556870888568 1325.5452318667706 3 442.8560791015625 MULTI HCD FTMS 0 0 0 4180 31412.3671875 0.4154038747361098 -12 0.2341938018798828 2 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 5.783430956126388 0.4446910851847804 1 {I|L}[C(Carbamidomethyl (C))S]DPE 6 -1 36.304 0 0 2.7388 0 0 606.277635642775 0 606.277635642775 0 18.34482980557111 0 0 0 0.7887254899964358 0 0 0 {I|L}[C(Carbamidomethyl (C))S]DPE 2.7388 - 39 NaN NaN 102689.8 NaN 2386 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4183 29.613 NaN 38044 35 0 6226.6 0.261 -1 WMSHIHTLC 9 19 600.7673588004293 1199.5201646676585 2 600.7666015625 MULTI HCD FTMS 0 0 0 4180 33006.55078125 0.6134536174310542 -3 0.08318710327148438 3 Carbamidomethyl (C),Oxidation (M) _WM(Oxidation (M))SHIHTLC(Carbamidomethyl (C))_ ENST00000462577.5_1_10:112655709-112655787:+|nuORF 2.0597508629832335 0.3354026079994024 1 S 1 -1 10.485 0 0 0.87406 0 0 195.05478488425848 914.4079073541624 1109.462692238421 0 0 0 0 0 0 0 0.5 0 S 0.87406 + + 2 + NaN NaN 85059.2 NaN 2387 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4184 29.616 NaN 39085 35 0 4451.2 0.262 + 33370 YGHPGYPAL 9 17 487.7404716905516 973.4663904479032 2 487.7392272949219 MULTI HCD FTMS 0 0 0 4180 10580.169921875 0.44661066095001184 9 -0.14283180236816406 4 Unmodified _YGHPGYPAL_ ENSG00000111077|ENST00000314250|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2 5.230669730166228 0.3113646817964458 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80485.7 NaN 2388 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4185 29.62 NaN 23073 35 0 4799.1 0.261 -1 YLMKFYCRC 9 18 452.8698260508739 NaN 0 452.8697814941406 PEAK HCD FTMS 0 0 0 4180 19041.802734375 0.8666844755304434 5 -0.08332633972167969 5 2 Carbamidomethyl (C),Oxidation (M) _YLM(Oxidation (M))KFYC(Carbamidomethyl (C))RC(Carbamidomethyl (C))_ ENST00000599501.6_3_2:98292334-98305447:+|nuORF 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80824.5 NaN 2389 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4186 29.623 NaN 11862 35 0 4122.4 0.261 -1 TTVRSRMRR 9 10 589.8303781420499 NaN 0 589.8301391601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _TTVRSRM(Oxidation (M))RR_ ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;nc|ENSG00000005486|Q6NTF9-3|RHBDD2 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91367.9 NaN 2390 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4187 29.626 NaN 38307 35 0 9399.6 0.261 + 35948 YYVCRKHI 8 22 541.2853435555735 1080.556134177947 2 541.7864379882812 MULTI HCD FTMS 0 0 0 4180 2474.772705078125 0.3603405106842655 -1 0.029878616333007812 7 Unmodified _YYVCRKHI_ REV__ENSG00000087266|ENST00000503393|SH3BP2;REV__ENST00000511185.5_1_4:2814082-2826487:+|nuORF;REV__ENST00000511237.5_1_4:2795936-2826487:+|nuORF;REV__ENST00000511663.5_1_4:2811506-2826487:+|nuORF;REV__nc|ENSG00000087266|P78314-2|SH3BP2;REV__nc|ENSG00000087266|P78314-3|SH3BP2;REV__nc|ENSG00000087266|P78314-4|SH3BP2 2.577480529830294 0.5381683276125971 1 V{I|L} 2 -1 20.969 0 0 1.9406 0 0 850.3910389630875 0 850.3910389630875 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.9406 - 1 NaN NaN 93225 NaN 2391 1794 4180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4189 29.631 NaN 164150 35 0 37353 0.327 + 7345 FVDEHEPSM 9 43 553.7267127748356 1105.4388726164711 2 553.7266235351562 MULTI HCD FTMS 0 0 0 4188 94331.78125 0.9121427680019968 2 -0.032833099365234375 1 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 88.95385435242217 0.004553379958619559 1 [{M(Oxidation (M))|F}V]DEHEPS{M(Oxidation (M))|F} 9 0 + 65.672 0 0 5.9408 5.9408 90.099 0 0 0 5.6424927368725974 51.692154244230224 5.6424927368725974 14.815534464597704 0 2.774227503252014 0 0.3807196863200844 0 + + [{M(Oxidation (M))|F}V]DEHEPS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DEHECVE;[HD]PE{[CP]|[EA]}[YV]{M(Oxidation (M))|F} 5.9408;4.6005;2.4965 +;-;- + 110 NaN NaN 105005.5 NaN 2392 1795 4188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4190 29.636 NaN 244500 35 0 36719 0.261 -1 NVTKEEPLM 9 38 538.7681902506879 1075.5218275681757 2 538.7679443359375 MULTI HCD FTMS 0 0 0 4188 57799.86328125 0.779981314309155 -2 0.056285858154296875 2 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 31.26834338654808 0.10542797264966089 1 E[{I|L}P]{M(Oxidation (M))|F} 4 -1 21.682 0 0 2.016 0 0 571.2933216779312 0 571.2933216779312 0 1.9774377314774192 0 0 0 0.8494850021680094 0 0 0 E[{I|L}P]{M(Oxidation (M))|F} 2.016 + + 17 NaN NaN 134168 NaN 2393 1795 4188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4191 29.639 NaN 40472 35 0 8452.6 0.261 + -1 FCASKMSM 8 33 497.1950571927297 992.3755614522594 2 497.1950988769531 MULTI HCD FTMS 0 0 0 4188 12647.6220703125 0.7975625355945697 -4 0.10959434509277344 3 Carbamidomethyl (C),2 Oxidation (M) _FC(Carbamidomethyl (C))ASKM(Oxidation (M))SM(Oxidation (M))_ REV__ENSG00000120008|ENST00000263461|WDR11;REV__ENST00000497136.6_1_10:122626245-122665534:+|nuORF;REV__WDR11-PDLIM1|1|fusion 7.289230182591677 0.5311777711368266 1 QS{M(Oxidation (M))|F} 3 -1 29.922 0 0 3.0151 0 0 612.2380014930782 0 612.2380014930782 0 29.921525057367404 0 0 0 1 0 0 0 QS{M(Oxidation (M))|F} 3.0151 - 33 + NaN NaN 95038.9 NaN 2394 1795 4188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4193 29.644 NaN 426890 35 0 105340 0.327 -1 0 64 508.1717423388874 1014.3289317445748 2 508.1716003417969 MULTI HCD FTMS 0 0 0 4192 254533.34375 0.9230331537862576 -2 0.03953361511230469 1 NaN NaN 1 VT{M(Oxidation (M))|F} 3 -1 26.387 0 0 2.6014 0 0 649.1678427326592 0 649.1678427326592 0 7.434312144578833 0 0 0 0.9247425010840047 0 0.28872548999643577 0 VT{M(Oxidation (M))|F} 2.6014 - 166 + NaN NaN 148999.5 NaN 2395 1796 4192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4194 29.649 NaN 91843 35 0 10485 0.261 + 21758 QAEQGQQEL 9 27 515.7438644243696 1029.473175915539 2 515.7435913085938 MULTI HCD FTMS 0 0 0 4192 56171.58984375 0.34195479952881336 6 -0.08299446105957031 2 Unmodified _QAEQGQQEL_ ENSG00000237649|ENST00000428849|KIFC1 28.233623360808718 0.11935903763491834 1 [QA]EQ{[QG]|[NA]}QE{I|L} 9 0 + 49.09 0 0 4.7685 4.7685 82.348 0 0 0 3.0102999566398125 13.627815773883327 3.0102999566398125 3.0102999566398125 0 1.9247425010840047 0 0 0 + + [QA]EQ{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ{[QG]|[NA]}QE{I|L};[QA]E[AG]{[QG]|[NA]}QE{I|L};[QA]EQ{[QG]|[NA]}[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A[AG]{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ{[QG]|[NA]}[AG]E{I|L} 4.7685;4.4761;3.874;3.874;3.5816;3.5816 +;-;-;-;-;- + 86 NaN NaN 90862.4 NaN 2396 1796 4192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4195 29.652 NaN 20684 35 0 3393.7 0.261 -1 YMYMHMNAY 9 11 620.233503003089 1238.452453072978 2 620.2329711914062 MULTI HCD FTMS 0 0 0 4192 17137.142578125 0.9393013714702668 -2 0.03953361511230469 3 Oxidation (M) _YMYMHM(Oxidation (M))NAY_ ENST00000395468.8_1_14:55530029-55531448:+|nuORF 0.6014990680409731 0.3464572424761564 1 {I|L} 1 -1 3.9794 0 0 0.32132 0 0 655.2031987778593 467.14328943424067 1122.3464882121 0 0 0 0 0 0 0 0 0 {I|L} 0.32132 - 1 + NaN NaN 91500.1 NaN 2397 1796 4192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4196 29.656 NaN 38904 35 0 6295.9 0.262 -1 ERFIFVMP 8 29 527.7716064453125 NaN 0 527.7716064453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _ERFIFVM(Oxidation (M))P_ ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant 0.7936320650641473 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.43702 0 0 571.3992963361344 332.07758508853755 903.476881424672 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.43702 + + 3 + NaN NaN 89250.9 NaN 2398 1796 4192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4197 29.659 NaN 29616 35 0 3660.6 0.261 -1 IYCFVSHLM 9 24 585.2789880592505 NaN 0 585.27880859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))FVSHLM_ L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99858.2 NaN 2399 1796 4192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4199 29.664 NaN 59273 35 0 6074.8 0.411 + -1 CSKMHEPWH 9 45 404.507793132014 NaN 0 404.507568359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))SKMHEPWH_ REV__ENSG00000101040|ENST00000471951|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-10|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-11|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-13|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-14|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-15|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-16|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-17|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-18|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-2|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-20|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-21|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-22|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-23|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-3|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-4|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-5|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-6|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-8|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-9|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4|ZMYND8 1.1933415558491238 0.28946407562688115 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104345.2 NaN 2400 1797 4198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4201 29.672 NaN 269670 35 0 25998 0.327 + 9219 HPLSDHEATL 10 58 560.2751367728551 1118.5357206125102 2 560.2749633789062 MULTI HCD FTMS 0 0 0 4200 88310.1953125 0.015065511682910832 76 -1.495950698852539 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 71.92227651296345 0.015307609975375192 1 EAT{I|L} 4 6 45.407 0 0 4.0595 0 0 686.3129749982437 0 686.3129749982437 0 10.854706403678875 0 0 0 0.6747425010840047 0 1.4247425010840047 0 + EAT{I|L} 4.0595 + + 167 NaN NaN 143416.6 NaN 2401 1798 4200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4202 29.676 NaN 179690 35 0 41470 0.264 + 1906 DAAHPTNVQRL 11 41 407.8825845532845 1220.6259242600536 3 407.8825988769531 MULTI HCD FTMS 0 0 0 4200 70095.9140625 0.36098092854850156 -6 0.12026405334472656 2 Unmodified _DAAHPTNVQRL_ ENSG00000168036|ENST00000349496|CTNNB1 19.143941131932106 0.2902806250200643 1 VQ[R{I|L}] 4 7 16.682 0 0 1.3667 0 0 706.3033057071224 0 706.3033057071224 0 8.61046901591578 0 0 0 0.5 0 0 0 + VQ[R{I|L}] 1.3667 + + 21 + NaN NaN 106768.3 NaN 2402 1798 4200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4203 29.68 NaN 72302 35 0 7492.2 0.261 -1 QPMQPTPSM 9 34 524.7253810561984 1047.4362091791968 2 524.725830078125 MULTI HCD FTMS 0 0 0 4200 22389.7109375 0.510451366256772 25 -0.5374431610107422 3 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 18.1463463914782 0.20357593197100715 1 V{I|L}{M(Oxidation (M))|F} 3 -1 28.94 0 0 2.763 0 0 670.2377361340781 0 670.2377361340781 0 19.47621246364342 0 0 0 0.4247425010840047 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.763 - 12 + NaN NaN 88151 NaN 2403 1798 4200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4204 29.683 NaN 54119 35 0 6221.7 0.261 + -1 QGAYTGTMT 9 34 473.2031240647468 944.3916951962937 2 473.2027587890625 MULTI HCD FTMS 0 0 0 4200 13644.7724609375 1 0 0 4 Oxidation (M) _QGAYTGTM(Oxidation (M))T_ REV__ENSG00000018280|ENST00000233202|SLC11A1;REV__ENST00000490872.1_1_2:219254703-219256473:+|nuORF;REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF;REV__nc|ENSG00000018280|P49279-2|SLC11A1;REV__SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant 10.823927491677226 0.26684000660059787 1 T{M(Oxidation (M))|F} 2 -1 21.198 0 0 2.2446 0 0 678.2960659798124 0 678.2960659798124 0 10.740312677277187 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.2446 + + 5 NaN NaN 99935.5 NaN 2404 1798 4200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4206 29.688 NaN 498230 35 0 69842 0.326 -1 0 62 492.70720567342755 983.3998584136551 2 492.7070007324219 MULTI HCD FTMS 0 0 0 4205 323873.78125 0.961167357172117 1 -0.0097808837890625 1 NaN NaN 1 NAD[QP]AV 7 -1 70.991 0 0 7.2189 0 0 0 285.05231653385005 285.05231653385005 24.61635608164464 0 0 0 0 2.1989700043360187 1.5228787452803376 0.3807196863200844 0 NAD[QP]AV 7.2189 - 280 + NaN NaN 161096.2 NaN 2405 1799 4205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4207 29.693 NaN 36835 35 0 8331.1 0.261 + -1 EAKQIFHEEM 10 25 426.5324605506802 NaN 0 426.5326843261719 PEAK HCD FTMS 0 0 0 4205 2287.109619140625 0.27196784625062403 1 -0.0097808837890625 2 Oxidation (M) _EAKQIFHEEM(Oxidation (M))_ REV__ENSG00000179023|ENST00000400664|KLHDC7A 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102040.3 NaN 2406 1799 4205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4209 29.698 NaN 4691100 35 0 1459200 0.327 + 18792 NADPQAVTM 9 87 481.7160340118904 961.4175150905808 2 481.7164306640625 MULTI HCD FTMS 0 0 0 4208 3434199.25 0.9347260097054532 3 -0.049724578857421875 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 203.63889746883072 1.2993995354712843E-17 1 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 122.21 0 0 12.711 12.711 94.379 0 0 0 10.197953115119063 10.197953115119063 10.197953115119063 9.208187539523749 0 3.1989700043360187 1.2218487496163564 0.9757724967479859 2.2658715643802765 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]NAVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]GGAVT{M(Oxidation (M))|F};[QP]DGQAVT{M(Oxidation (M))|F};[QP]DANAVT{M(Oxidation (M))|F};[QP]DG[AG]AVT{M(Oxidation (M))|F};[QP]DAGGAVT{M(Oxidation (M))|F};[QP]DQQVT{M(Oxidation (M))|F};{[YC]|[HE]}D[KS]VT{M(Oxidation (M))|F} 12.711;11.753;9.6969;8.7391;8.6496;8.1029;7.6918;7.1451;5.6852;5.6687 +;-;-;-;-;-;-;-;-;- + 745 NaN NaN 770733 NaN 2407 1800 4208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4210 29.702 NaN 1153800 35 0 74748 0.261 -1 0 89 593.7776135262044 1185.5406741192087 2 593.7775268554688 MULTI HCD FTMS 0 0 0 4208 736686.625 0.7710920788528449 4 -0.07304573059082031 2 NaN NaN 1 C(Carbamidomethyl (C))ETVTKSY 8 -1 82.733 0 0 6.9785 0 0 199.08516406951384 0 199.08516406951384 0 26.99600975727897 0 0 0 2.298455006504028 0 1.666386562212267 0 C(Carbamidomethyl (C))ETVTKSY 6.9785 - 2251 + NaN NaN 262188.9 NaN 2408 1800 4208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4211 29.706 NaN 73630 35 0 7179.8 0.261 + -1 RTEERVIM 8 26 525.2743902876721 1048.534227642144 2 525.2747192382812 MULTI HCD FTMS 0 0 0 4208 12289.9931640625 0.7096616866293712 2 -0.029420852661132812 3 Oxidation (M) _RTEERVIM(Oxidation (M))_ REV__ENSG00000198182|ENST00000355202|ZNF607;REV__nc|ENSG00000198182|Q96SK3-3|ZNF607 15.847184025352803 0.47719562709667024 1 V{I|L}{M(Oxidation (M))|F} 3 -1 38.94 0 0 3.7138 0 0 671.3342897532754 0 671.3342897532754 0 38.94016261540408 0 0 0 1.4247425010840047 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.7138 + + 16 + NaN NaN 84959.3 NaN 2409 1800 4208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4212 29.709 NaN 57839 35 0 5380.3 0.261 + 19434 NPNEQGGII 9 29 471.2380097101038 940.4614664870077 2 471.2376403808594 MULTI HCD FTMS 0 0 0 4208 19329.7578125 0.1838901051399855 -6 0.09310722351074219 4 Unmodified _NPNEQGGII_ REV__ENSG00000165821|ENST00000537235|SALL2;REV__nc|ENSG00000165821|Q9Y467-3|SALL2;REV__nc|ENSG00000165821|Q9Y467|SALL2 2.0597508629832335 0.3354026079994024 1 {I|L} 1 -1 6.9897 0 0 0.74322 0 0 149.1061767142183 675.2485160668513 824.3546927810696 0 0 0 0 0 0 0 0 0 {I|L} 0.74322 + + 3 + NaN NaN 84567.4 NaN 2410 1800 4208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4213 29.712 NaN 33680 35 0 8811 0.261 -1 HCTDRPFK 8 24 530.7528686523438 NaN 0 530.7528686523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _HC(Carbamidomethyl (C))TDRPFK_ ENSG00000020256|ENST00000216923|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;nc|ENSG00000020256|Q9NTW7-6|ZFP64 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81150 NaN 2411 1800 4208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4215 29.718 NaN 60538 35 0 9799.1 0.327 + 19723 NYARGHYTI 9 32 547.7725214593536 1093.530489985507 2 547.7725830078125 MULTI HCD FTMS 0 0 0 4214 32134.798828125 0.3783698638982952 10 -0.21364784240722656 1 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 10.073929032068715 0.27331982688540024 1 YT{I|L} 3 6 34.253 0 0 3.1323 0 0 698.3238889119078 0 698.3238889119078 0 34.25250945692483 0 0 0 0.3807196863200844 0 0.4247425010840047 0 + YT{I|L} 3.1323 + + 4 NaN NaN 104994.9 NaN 2412 1801 4214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4216 29.722 NaN 17225 35 0 2811.8 0.261 -1 NKYFCYFV 8 15 570.7625601821463 NaN 0 570.762451171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _NKYFC(Carbamidomethyl (C))YFV_ tr|U7T5T5|U7T5T5_FUSNUDNApolymeraseIIIdeltaN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00384PE=4SV=1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88792.9 NaN 2413 1801 4214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4218 29.727 NaN 110490 35 0 19588 0.327 + -1 QGGSAMSDTM 10 34 500.68928691224284 999.3640208912857 2 500.68927001953125 MULTI HCD FTMS 0 0 0 4217 49235.765625 0.7946708372047013 7 -0.15066146850585938 1 Oxidation (M) _QGGSAMSDTM(Oxidation (M))_ REV__AMER1|p.S339I|1|0.41|ENSG00000184675|chrX:64192271-64192271|C/A|missense_variant;REV__ENSG00000184675|ENST00000374869|AMER1;REV__nc|ENSG00000184675|Q5JTC6-2|AMER1 16.149105407346934 0.3600587335443843 1 T{M(Oxidation (M))|F} 2 -1 23.06 0 0 2.3074 0 0 733.2697010724625 0 733.2697010724625 0 8.393943874995172 0 0 0 0.5 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.3074 + + 10 NaN NaN 114410.6 NaN 2414 1802 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4219 29.732 NaN 153610 35 0 20824 0.261 -1 MLDILMDYCH 10 43 442.8556870888568 1325.5452318667706 3 442.8558349609375 MULTI HCD FTMS 0 0 0 4217 63564.05078125 0.8405846280493436 -4 0.05545806884765625 2 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 8.97624648632007 0.42715123575657504 1 DPE 3 -1 35.005 0 0 2.6408 0 0 966.3972046882305 0 966.3972046882305 0 29.318722087674658 0 0 0 0.8807196863200843 0 0 0 DPE 2.6408 - 25 NaN NaN 111088.3 NaN 2415 1802 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4220 29.735 NaN 74938 35 0 12209 0.261 + -1 LYYDMVKITM 10 31 436.8790195219607 NaN 0 436.878662109375 PEAK HCD FTMS 0 0 0 4217 16974.8671875 0.6775406746256802 13 -0.28758811950683594 3 2 Oxidation (M) _LYYDM(Oxidation (M))VKITM(Oxidation (M))_ REV__tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1 1.9063754702782614 0.33855269584400594 1 T 1 -1 7.8567 0 0 0.90126 0 0 605.6499019816183 162.02228723697502 767.6721892185933 0 0 0 0 0 0 0 0.3252574989159953 0 T 0.90126 + + 2 + NaN NaN 93206.1 NaN 2416 1802 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4221 29.739 NaN 50515 35 0 5500.6 0.261 -1 MPSASMTRL 9 32 513.2413588795854 1024.4681648259707 2 513.2409057617188 MULTI HCD FTMS 0 0 0 4217 17838.794921875 0.3524552921954386 26 -0.5825824737548828 4 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 9.38312468134398 0.279288223203164 1 AS[EP] 4 -1 23.94 0 0 2.3368 0 0 622.3124867169937 0 622.3124867169937 0 23.940162615404077 0 0 0 0.5 0 0.4247425010840047 0 AS[EP] 2.3368 - 6 NaN NaN 93996.2 NaN 2417 1802 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4222 29.743 NaN 22509 35 0 4739.4 0.261 + 2054 DEFPQQYRS 9 17 585.2666270552685 1168.5187011773369 2 585.266357421875 MULTI HCD FTMS 0 0 0 4217 7184.04345703125 0.4100538108983206 -5 0.06328773498535156 5 Unmodified _DEFPQQYRS_ REV__ENSG00000124181|ENST00000685551|PLCG1;REV__ENST00000608689.5_2_20:39801092-39811607:+|nuORF;REV__nc|ENSG00000124181|P19174|PLCG1 1.4819007175156935 0.3397831423917744 1 Y[EP] 3 -1 10.458 0 0 0.89494 0 0 761.366014549025 0 761.366014549025 0 10.45757490560675 0 0 0 0 0 0 0 Y[EP] 0.89494 - 1 NaN NaN 104882.8 NaN 2418 1802 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4224 29.748 NaN 97326 35 0 19294 0.327 + 1921 DADEEKASL 9 41 489.2248722409404 976.4351915486808 2 489.2242736816406 MULTI HCD FTMS 0 0 0 4223 39294.7265625 0.5902575423899673 -3 0.049724578857421875 1 Unmodified _DADEEKASL_ ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1 53.31671820480216 0.026930930319421505 1 {[DA]|[EG]}DEEKAS{I|L} 9 0 + 77.89 0 0 7.977 7.977 96.835 0 0 0 16.34048173655316 16.34048173655316 16.34048173655316 77.89049412297771 0 2.2302046884880937 1.5228787452803376 0.3807196863200844 0 + + {[DA]|[EG]}DEEKAS{I|L} 7.977 + + 48 NaN NaN 96426.9 NaN 2419 1803 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4225 29.752 NaN 24229 35 0 5344.5 0.261 + 3928 EPTTNQNWNP 10 20 600.7673588004293 1199.5201646676585 2 600.7669677734375 MULTI HCD FTMS 0 0 0 4223 20019.025390625 0.3720698846938996 6 -0.1303577423095703 2 Unmodified _EPTTNQNWNP_ REV__ENSG00000041802|ENST00000265245|LSG1;REV__LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant 3.2813086475875832 0.45793521633868084 1 S 1 -1 10.485 0 0 0.87406 0 0 195.05319797019598 914.4127291315061 1109.4659271017022 0 0 0 0 0 0 0 0.5 0 S 0.87406 - 3 + NaN NaN 84874.2 NaN 2420 1803 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4226 29.756 NaN 65509 35 0 9798.1 0.263 + 4098 ESSGINITK 9 38 474.7538386974154 947.4931244616308 2 474.7536926269531 MULTI HCD FTMS 0 0 0 4223 36702.54296875 1 0 0 3 Unmodified _ESSGINITK_ ENSG00000174718|ENST00000312561|RESF1 5.731851221503515 0.3075653528928475 1 {I|L} 1 8 6.9897 0 0 0.7377 0 0 492.29203790624484 339.09458337955317 831.386621285798 0 0 0 0 0 0 0 0 0 + {I|L} 0.7377 + + 9 + NaN NaN 86139.2 NaN 2421 1803 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4227 29.759 NaN 48750 35 0 6630.7 0.261 + 11802 KEIQRNLYNK 10 27 435.91371932202014 1304.7193285662604 3 435.91302490234375 MULTI HCD FTMS 0 0 0 4223 23354.853515625 1 0 0 4 Unmodified _KEIQRNLYNK_ REV__ENSG00000141519|ENST00000397545|CCDC40;REV__ENST00000574799.5_1_17:78022329-78073571:+|nuORF;REV__nc|ENSG00000141519|Q4G0X9-2|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-4|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-5|CCDC40 1.5922808571145555 0.4668755089467872 1 KE 2 -1 20.969 0 0 1.6072 0 0 0 1044.5584330965046 1044.5584330965046 20.969100130080562 0 0 0 0 0 0 0 0 KE 1.6072 + + 3 + NaN NaN 86144.4 NaN 2422 1803 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4228 29.763 NaN 24952 35 0 5201.1 0.261 + -1 RHFMWMTV 8 22 570.2609226179661 NaN 0 570.2606201171875 PEAK HCD FTMS 0 0 0 4223 7506.3896484375 0.7213406303148309 1 -0.023321151733398438 5 2 Oxidation (M) _RHFM(Oxidation (M))WM(Oxidation (M))TV_ REV__ENST00000422003.6_1_11:120930721-120957500:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88989.7 NaN 2423 1803 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4229 29.766 NaN 13239 35 0 3803.2 0.261 + -1 CGSAHSCEMLW 11 12 640.7467437336123 NaN 0 640.746826171875 PEAK HCD FTMS 0 0 0 4223 2586.810302734375 0.5172270966013556 1 -0.023321151733398438 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))GSAHSCEMLW_ REV__ENSG00000145041|ENST00000684031|DCAF1;REV__nc|ENSG00000145041|Q9Y4B6-2|DCAF1 0.35063188157827746 0.3411255017974031 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83694.1 NaN 2424 1803 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4231 29.771 NaN 201930 35 0 33928 0.327 -1 NVTKEEPLM 9 31 538.7681902506879 1075.5218275681757 2 538.7682495117188 MULTI HCD FTMS 0 0 0 4230 38783.0703125 0.5233588530840193 7 -0.16019630432128906 1 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 21.536976647645854 0.1742816388551942 1 {[NV]|[RG]}T 3 -1 14.705 0 0 1.3672 0 0 0 758.3403781645374 758.3403781645374 8.138181262758266 0 0 0 0 0.4247425010840047 0 0 0 {[NV]|[RG]}T 1.3672 + + 3 + NaN NaN 118482.2 NaN 2425 1804 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4232 29.776 NaN 87138 35 0 12195 0.261 -1 FVDEHEPSM 9 35 553.7267127748356 1105.4388726164711 2 553.7265014648438 MULTI HCD FTMS 0 0 0 4230 37431.55859375 0.3619450943669322 11 -0.24396324157714844 2 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 20.453626601364224 0.18364154288633264 1 EC{NN|[MP]|[D{I|L}]|[EV]} 4 -1 26.198 0 0 2.3699 0 0 627.2630482404312 0 627.2630482404312 0 21.593793813122062 0 0 0 1 0 0 0 EC{NN|[MP]|[D{I|L}]|[EV]} 2.3699 - 18 NaN NaN 106522.7 NaN 2426 1804 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4233 29.779 NaN 24721 35 0 4871.9 0.261 -1 HPPDAVDEPQM 11 16 626.2693313602408 1250.5241097872815 2 626.268310546875 MULTI HCD FTMS 0 0 0 4230 9173.0654296875 0.6858392215099516 -3 0.0534515380859375 3 Oxidation (M) _HPPDAVDEPQM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 4.5288652416199255 0.3990586020344083 1 E[QP]{M(Oxidation (M))|F} 4 -1 21.198 0 0 1.6951 0 0 731.3282948224625 0 731.3282948224625 0 21.197887582883936 0 0 0 0.5 0 0 0 E[QP]{M(Oxidation (M))|F} 1.6951 + + 3 NaN NaN 82036 NaN 2427 1804 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4234 29.783 NaN 34742 35 0 6251.3 0.264 -1 MFASCHCV 8 23 478.1779484866422 NaN 0 478.2192077636719 PEAK HCD FTMS 0 0 0 4230 5491.55615234375 0.8205325246715176 -16 0.30641937255859375 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))FASCHCV_ ENSG00000172159|ENST00000304195|FRMD3;FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;nc|ENSG00000172159|A2A2Y4-2|FRMD3 0.7936320650641473 0.38822285293237185 1 A 1 -1 1.5938 0 0 0.167 0 0 424.4311400379344 455.8412264459594 880.2723664838938 0 0 0 0 0 0 0 0 0 A 0.167 + + 1 + NaN NaN 96265.7 NaN 2428 1804 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4235 29.786 NaN 18103 35 0 5475.9 0.261 + -1 LMIKHLIHC 9 15 582.8231737903926 NaN 0 582.8233032226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _LMIKHLIHC(Carbamidomethyl (C))_ REV__ENST00000327064.8_1_19:11032629-11032701:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89653.7 NaN 2429 1804 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4237 29.791 NaN 209560 35 0 48449 0.327 -1 GQRCCCCW 8 51 508.1717423388874 1014.3289317445748 2 508.17156982421875 MULTI HCD FTMS 0 0 0 4236 119136.46875 0.43203341794495415 7 -0.1636505126953125 1 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 2.302733041254933 0.5385759549224092 1 AV[{M(Oxidation (M))|F}T] 4 -1 19.182 0 0 1.8911 0 0 578.1257191388687 0 578.1257191388687 0 8.724862742317468 0 0 0 0.75 0 0 0 AV[{M(Oxidation (M))|F}T] 1.8911 - 13 NaN NaN 128230 NaN 2430 1805 4236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4238 29.796 NaN 30959 35 0 5175.8 0.261 -1 GPDGGEEVSM 10 21 497.1950571927297 992.3755614522594 2 497.1948547363281 MULTI HCD FTMS 0 0 0 4236 10965.5849609375 0.6914928116212206 6 -0.1401538848876953 2 Oxidation (M) _GPDGGEEVSM(Oxidation (M))_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866|KLC1 9.38312468134398 0.42334543440173333 1 S{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.0449 0 0 740.2965565412125 0 740.2965565412125 0 24.731975075880328 0 0 0 0.9247425010840047 0 0 0 S{M(Oxidation (M))|F} 3.0449 + + 14 NaN NaN 104988.5 NaN 2431 1805 4236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4239 29.799 NaN 48118 35 0 10188 0.261 -1 FCCRIMAL 8 21 543.7480186282162 1085.4814843232323 2 543.7489624023438 MULTI HCD FTMS 0 0 0 4236 15816.4716796875 0.5160842293392862 -4 0.07349395751953125 3 2 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))C(Carbamidomethyl (C))RIM(Oxidation (M))AL_ ABCG8|p.A550V|1|0.29|ENSG00000143921|chr2:43875306-43875306|C/T|missense_variant;ENSG00000143921|ENST00000272286|ABCG8;nc|ENSG00000143921|Q9H221-2|ABCG8 8.593279151180031 0.5292430274356741 1 {M(Oxidation (M))|F}A{I|L} 3 -1 29.45 0 0 2.7131 0 0 736.31059462715 0 736.31059462715 0 29.45046257204389 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F}A{I|L} 2.7131 + + 4 NaN NaN 87605.2 NaN 2432 1805 4236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4240 29.803 NaN 33918 35 0 5800.2 0.261 + -1 MLCLPLMFL 9 23 569.2986817135645 NaN 0 569.3164672851562 PEAK HCD FTMS 0 0 0 4236 4911.88330078125 1 0 0 4 Carbamidomethyl (C) _MLC(Carbamidomethyl (C))LPLMFL_ REV__ENSG00000186318|ENST00000313005|BACE1;REV__nc|ENSG00000186318|P56817-2|BACE1;REV__nc|ENSG00000186318|P56817-3|BACE1;REV__nc|ENSG00000186318|P56817-4|BACE1;REV__nc|ENSG00000186318|P56817-5|BACE1;REV__nc|ENSG00000186318|P56817-6|BACE1 2.302733041254933 0.2840881193086663 1 {I|L} 1 -1 6.9897 0 0 0.61497 0 0 131.05946735518836 889.4173423330514 1020.4768096882397 0 0 0 0 0 0 0 0 0 {I|L} 0.61497 + + 4 + NaN NaN 99539.1 NaN 2433 1805 4236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4241 29.806 NaN 31702 35 0 6966.8 0.261 + -1 MEMFMSMR 8 16 563.70556640625 NaN 0 563.70556640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 4 Oxidation (M) _M(Oxidation (M))EM(Oxidation (M))FM(Oxidation (M))SM(Oxidation (M))R_ REV__ENST00000424804.6_1_19:50496160-50519419:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79459.2 NaN 2434 1805 4236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4243 29.811 NaN 318640 35 0 69978 0.327 + 1907 DAAHPTNVQRL 11 55 407.8825845532845 1220.6259242600536 3 407.88262939453125 MULTI HCD FTMS 0 0 0 4242 158540.1875 0.8164524974305244 2 -0.046810150146484375 1 Unmodified _DAAHPTNVQRL_ ENSG00000168036|ENST00000349496|CTNNB1 59.17704102725264 0.04373365728438054 1 {[DA]|[EG]}AH[TP]NVQ[R{I|L}] 11 0 + 68.716 0 0 5.6296 5.6296 86.468 0 0 0 59.22222652369793 5.862435673934272 5.862435673934272 9.128498242810991 0 1.4247425010840047 1.6989700043360187 0 0.4247425010840047 + + {[DA]|[EG]}AH[TP]NVQ[R{I|L}];{[DA]|[EG]}AH[TP]NV[AG][R{I|L}];{[DA]|[EG]}AH[TP]GGVQ[R{I|L}] 5.6296;4.8817;4.8817 +;-;- + 78 + NaN NaN 144000.1 NaN 2435 1806 4242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4244 29.816 NaN 243460 35 0 18225 0.261 + 9220 HPLSDHEATL 10 53 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4242 95087.015625 0.016221621294373833 84 -1.6946640014648438 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 71.92227651296345 0.015307609975375192 1 EAT{I|L} 4 6 44.897 0 0 4.0139 0 0 686.3139515607437 0 686.3139515607437 0 8.13354911253704 0 0 0 0.7742275032520141 0 1.4247425010840047 0 + EAT{I|L} 4.0139 + + 278 NaN NaN 127115.1 NaN 2436 1806 4242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4245 29.819 NaN 29558 35 0 5384.7 0.263 -1 SEMFPQIKNCS 11 30 452.8698260508739 NaN 0 452.869140625 PEAK HCD FTMS 0 0 0 4242 12979.34375 0.590752665995797 17 -0.3983039855957031 3 Carbamidomethyl (C),Oxidation (M) _SEM(Oxidation (M))FPQIKNC(Carbamidomethyl (C))S_ ENSG00000163817|ENST00000358525|SLC6A20;nc|ENSG00000163817|Q9NP91-2|SLC6A20 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101838.8 NaN 2437 1806 4242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4246 29.823 NaN 122400 35 0 11719 0.261 + 3158 EASVLHNLK 9 38 505.7852268941315 1009.555900855063 2 505.7851257324219 MULTI HCD FTMS 0 0 0 4242 17513.23046875 0.6086054100662899 -2 0.04005622863769531 4 Unmodified _EASVLHNLK_ ENSG00000100345|ENST00000216181|MYH9;ENSG00000133026|ENST00000360416|MYH10;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580|MYH10 6.723162845929126 0.3000504726104499 1 {[WT]|[RM]}V{I|L}H 5 6 10.177 0 0 1.0081 0 0 0 370.20908533267817 370.20908533267817 6.876531584792499 0 0 0 0 0 0 0 0 {[WT]|[RM]}V{I|L}H 1.0081 - 8 + NaN NaN 110096.4 NaN 2438 1806 4242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4247 29.826 NaN 45403 35 0 5672.9 0.261 + -1 MTTHDIPAM 9 27 524.7253810561984 1047.4362091791968 2 524.7255249023438 MULTI HCD FTMS 0 0 0 4242 16143.3994140625 0.3680449609170831 33 -0.6839256286621094 5 2 Oxidation (M) _M(Oxidation (M))TTHDIPAM(Oxidation (M))_ REV__ENSG00000275700|ENST00000619387|AATF 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4783 0 0 882.3902477307578 0 882.3902477307578 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4783 + + 5 + NaN NaN 91013.4 NaN 2439 1806 4242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4248 29.829 NaN 22591 35 0 3068 0.261 + 7121 FRVRSRFNP 9 24 589.8299744781802 1177.6453960231604 2 590.3319702148438 MULTI HCD FTMS 0 0 0 4242 4808.17138671875 0.6379372939624245 -3 0.06337738037109375 6 Unmodified _FRVRSRFNP_ ENSG00000147168|ENST00000374202|IL2RG;ENST00000512747.3_1_X:70328447-70329231:-|nuORF;nc|ENSG00000147168|P31785-2|IL2RG 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110842.3 NaN 2440 1806 4242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4250 29.835 NaN 1407600 35 0 462410 0.327 + 18793 NADPQAVTM 9 56 481.7160340118904 961.4175150905808 2 481.7161865234375 MULTI HCD FTMS 0 0 0 4249 831143.875 0.2262221092063537 10 -0.2307891845703125 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 128.57297698046145 0.0006915168155602875 1 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 106.2 0 0 11.046 11.046 94.235 0 0 0 0.10213141451892227 0.10213141451892227 0.10213141451892227 9.208187539523749 0 3.305462187404089 1.0969100130080565 1.9604093769761874 0 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};[QP][DG]QAVT{M(Oxidation (M))|F};[QP][DG][AG]AVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V[QA]PD{[QG]|[NA]} 11.046;10.089;6.4445;5.4868;0.74626 +;-;-;-;- + 260 + NaN NaN 291666.4 NaN 2441 1807 4249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4251 29.839 NaN 245550 35 0 56144 0.261 -1 0 41 593.7776135262044 1185.5406741192087 2 593.7774658203125 MULTI HCD FTMS 0 0 0 4249 98369.296875 0.10296343526344925 11 -0.2575836181640625 2 NaN NaN 1 TVHKSY 6 -1 58.665 0 0 4.9484 0 0 452.1547108380875 0 452.1547108380875 0 22.959252469304303 0 0 0 1.4247425010840047 0 1.3807196863200843 0 TVHKSY 4.9484 - 236 NaN NaN 123740.2 NaN 2442 1807 4249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4252 29.843 NaN 106930 35 0 16576 0.262 + 22025 QGCWACLGF 9 37 492.70720567342755 983.3998584136551 2 492.70703125 MULTI HCD FTMS 0 0 0 4249 68419.703125 0.20305066059173965 9 -0.21396636962890625 3 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 1 {[QG]|[NA]}D 3 7 36.923 0 0 3.7547 0 0 0 680.2717205564863 680.2717205564863 13.295671638727029 0 0 0 0 1 1.5228787452803376 0 0.4247425010840047 {[QG]|[NA]}D 3.7547 - 43 NaN NaN 90803 NaN 2443 1807 4249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4253 29.846 NaN 99835 35 0 13198 0.261 + 26319 SSAEVIAQAR 10 27 516.2777887081066 1030.5410244830132 2 516.2774658203125 MULTI HCD FTMS 0 0 0 4249 32555.58203125 0.5111783926770157 -3 0.06344795227050781 4 Unmodified _SSAEVIAQAR_ ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2 43.77239144664712 0.11267038882370725 1 V{I|L}AQAR 6 4 54.245 0 0 5.2638 0 0 374.1443702855507 0 374.1443702855507 0 54.24533159112684 0 0 0 1.610924374808178 0 0 0 + V{I|L}AQAR 5.2638 + + 40 + NaN NaN 104532.3 NaN 2444 1807 4249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4254 29.849 NaN 58751 35 0 8550.9 0.261 -1 HPDSATGAMAL 11 22 543.7480186282162 1085.4814843232323 2 543.7470703125 MULTI HCD FTMS 0 0 0 4249 19060.12109375 0.6219230246158031 -2 0.04340553283691406 5 Oxidation (M) _HPDSATGAM(Oxidation (M))AL_ ENSG00000171056|ENST00000304501|SOX7;nc|ENSG00000171056|Q9BT81-2|SOX7 11.494710602746466 0.35692862141139436 1 {M(Oxidation (M))|F}A{I|L} 3 -1 31.198 0 0 2.8741 0 0 736.3138294904312 0 736.3138294904312 0 31.197887582883936 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}A{I|L} 2.8741 + + 3 NaN NaN 105257.4 NaN 2445 1807 4249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4255 29.853 NaN 27606 35 0 4738.6 0.261 -1 HPPDAVDEPQM 11 19 626.2693313602408 1250.5241097872815 2 626.2686767578125 MULTI HCD FTMS 0 0 0 4249 13374.9501953125 1 0 0 6 Oxidation (M) _HPPDAVDEPQM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 2.498486711656943 0.4079631525365919 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89425.4 NaN 2446 1807 4249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4257 29.858 NaN 123550 35 0 13120 0.327 + 21744 QAEGSSHIL 9 46 471.2380097101038 940.4614664870077 2 471.23785400390625 MULTI HCD FTMS 0 0 0 4256 81453.0859375 0.7748889914873655 2 -0.059844970703125 1 Unmodified _QAEGSSHIL_ ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 7.289230182591677 0.29575926068275815 1 [QA]EG 4 5 13.188 0 0 1.4022 0 0 0 552.2760714166624 552.2760714166624 6.197887582883936 0 0 0 0 0 0 0 0 + [QA]EG 1.4022 + + 16 + NaN NaN 96782.2 NaN 2447 1808 4256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4258 29.863 NaN 44269 35 0 5560.8 0.261 -1 0 26 485.2509984397931 484.2437219731931 1 485.25152587890625 MULTI HCD FTMS 0 0 0 4256 25079.49609375 0.0345887706206761 119 -2.5570716857910156 2 NaN NaN 1 V 1 -1 2.4743 0 0 0.51095 0 0 65.0291966819806 317.1245516412719 382.1537483232525 0 0 0 0 0 0 0 0 0 V 0.51095 - 4 + NaN NaN 96077.6 NaN 2448 1808 4256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4259 29.866 NaN 30064 35 0 5173.1 0.261 -1 QPLGMFLCL 9 20 547.7725214593536 1093.530489985507 2 547.7723999023438 MULTI HCD FTMS 0 0 0 4256 13089.693359375 0.1541240547777258 17 -0.3951072692871094 3 Carbamidomethyl (C),Oxidation (M) _QPLGM(Oxidation (M))FLC(Carbamidomethyl (C))L_ ENSG00000188771|ENST00000338832|PLET1 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87129 NaN 2449 1808 4256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4260 29.87 NaN 15987 35 0 4980.1 0.261 -1 PYNPKKMY 8 10 528.7639376386209 NaN 0 528.7640991210938 PEAK HCD FTMS 0 0 0 4256 5415.673828125 0.6594667756888984 6 -0.14356040954589844 4 Oxidation (M) _PYNPKKM(Oxidation (M))Y_ ENSG00000165300|ENST00000683689|SLITRK5;nc|ENSG00000165300|O94991-2|SLITRK5;SLITRK5|p.D550Tfs*3|1|0.26|ENSG00000165300|chr13:87677035-87677035|G/-|frameshift_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84437.4 NaN 2450 1808 4256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4261 29.873 NaN 76056 35 0 13041 0.263 -1 LYTLYFRW 8 32 401.8780694096228 NaN 0 401.8780822753906 PEAK HCD FTMS 0 0 0 4256 1028.5509033203125 0.20312423459774412 -5 0.11018753051757812 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LYTLYFRW_ ENST00000489185.1_1_1:62941462-62941510:-|nuORF 0.6903765706972694 0.38822285293237185 1 H 1 -1 4.6041 0 0 0.57426 0 0 514.7199927237394 146.94480310611564 661.664795829855 0 0 0 0 0 0 0 0 0 H 0.57426 - 1 + NaN NaN 112568.2 NaN 2451 1808 4256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4263 29.878 NaN 149390 35 0 20094 0.327 -1 MLDILMDYCH 10 33 442.8556870888568 1325.5452318667706 3 442.85601806640625 MULTI HCD FTMS 0 0 0 4262 75609.5390625 0.9998767461903415 3 -0.07665634155273438 1 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 8.97624648632007 0.42715123575657504 1 DPE 3 -1 35.005 0 0 2.6408 0 0 966.3965447788579 0 966.3965447788579 0 29.318722087674658 0 0 0 0.8807196863200843 0 0 0 DPE 2.6408 - 19 NaN NaN 105034.4 NaN 2452 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4264 29.883 NaN 94078 35 0 16320 0.261 + 1922 DADEEKASL 9 41 489.2248722409404 976.4351915486808 2 489.2245178222656 MULTI HCD FTMS 0 0 0 4262 52960.30859375 0.7955322336965591 3 -0.07665634155273438 2 Unmodified _DADEEKASL_ ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1 55.23464941255904 0.024247875903973527 1 {[DA]|[EG]}DEEKAS{I|L} 9 0 + 74.874 0 0 7.6681 7.6681 96.342 0 0 0 7.996812376923046 7.996812376923046 7.996812376923046 74.87388445241912 0 2.298455006504028 1.6989700043360187 0.3807196863200844 0 + + {[DA]|[EG]}DEEKAS{I|L} 7.6681 + + 50 + NaN NaN 89537.2 NaN 2453 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4265 29.886 NaN 68433 35 0 18815 0.261 + 30592 VPALSEGQR 9 26 478.76178610444094 955.5090192756819 2 478.76141357421875 MULTI HCD FTMS 0 0 0 4262 26657.40234375 0.12437804552652068 -7 0.15066146850585938 3 Unmodified _VPALSEGQR_ ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6 9.38312468134398 0.279288223203164 1 VPA 3 6 43.188 0 0 4.5199 0 0 0 685.3263643854124 685.3263643854124 43.187587626244124 0 0 0 0 0 1.6989700043360187 0 0 + VPA 4.5199 + + 3 + NaN NaN 92541.1 NaN 2454 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4266 29.89 NaN 43887 35 0 3643 0.261 -1 0 31 513.2262729867191 512.218996520119 1 513.2410888671875 MULTI HCD FTMS 0 0 0 4262 1143.1826171875 0.21853418326181523 2 -0.05315971374511719 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88278.8 NaN 2455 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4267 29.893 NaN 33159 35 0 4945.8 0.261 + 11837 KEQIRYLARE 10 16 435.91371932202014 1304.7193285662604 3 435.9142761230469 MULTI HCD FTMS 0 0 0 4262 4904.9873046875 0.21002004150468925 6 -0.13692665100097656 5 Unmodified _KEQIRYLARE_ REV__DYNC1H1-HSP90AA1|1|fusion;REV__ENSG00000197102|ENST00000360184|DYNC1H1 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78104.3 NaN 2456 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4268 29.896 NaN 25587 35 0 6496.8 0.261 + 33480 YHVIWHWE 8 17 585.2794935950617 1168.5444342569233 2 585.2665405273438 MULTI HCD FTMS 0 0 0 4262 7189.533203125 0.7090714676749071 2 -0.05315971374511719 6 Unmodified _YHVIWHWE_ ENSG00000176402|ENST00000312891|GJC3 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 88176.4 NaN 2457 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4269 29.9 NaN 18239 35 0 5294.1 0.261 -1 FMKCRYMDE 9 15 648.2655639648438 NaN 0 648.2655639648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _FMKC(Carbamidomethyl (C))RYM(Oxidation (M))DE_ tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84054.3 NaN 2458 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4270 29.903 NaN 20616 35 0 4455.8 0.261 + -1 YYNHCVIC 8 14 564.7341250488989 NaN 0 564.7343139648438 PEAK HCD FTMS 0 0 0 4262 5152.09228515625 0.949668274905303 1 -0.03967475891113281 8 2 Carbamidomethyl (C) _YYNHC(Carbamidomethyl (C))VIC(Carbamidomethyl (C))_ REV__ENSG00000170775|ENST00000303921|GPR37 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98036.2 NaN 2459 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4271 29.913 NaN 27495 35 0 4909 0.261 + 31209 VVMDSRKVTE 10 16 582.3081665039062 NaN 0 582.3081665039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _VVMDSRKVTE_ tr|U7T245|U7T245_FUSNUUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murFPE=3SV=1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92909.3 NaN 2460 1809 4262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4273 29.918 NaN 46266 35 0 9120.9 0.327 + -1 PDDIPRMQ 8 20 494.23182584335217 986.4490987535044 2 494.2317199707031 MULTI HCD FTMS 0 0 0 4272 25376.61328125 0.19398340317108062 13 -0.29164886474609375 1 Oxidation (M) _PDDIPRM(Oxidation (M))Q_ REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF;REV__ENST00000554652.5_1_14:36147090-36221314:-|nuORF;REV__nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;REV__nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;REV__nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;REV__nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;REV__nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;REV__nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1;REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant 7.910154910731844 0.5302565402355366 1 [DP]D{I|L} 4 -1 21.198 0 0 2.1489 0 0 0 543.2366645680573 543.2366645680573 21.197887582883936 0 0 0 0 0.5 0 0 0 [DP]D{I|L} 2.1489 + + 6 NaN NaN 84627.1 NaN 2461 1810 4272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4274 29.923 NaN 35972 35 0 4804.1 0.261 + -1 VSGHSDDSDM 10 28 533.1908059187049 NaN 0 533.1918334960938 PEAK HCD FTMS 0 0 0 4272 10632.849609375 0.5352337736444889 13 -0.29164886474609375 2 Oxidation (M) _VSGHSDDSDM(Oxidation (M))_ REV__ENSG00000213995|ENST00000680254|NAXD;REV__ENST00000470164.2_1_13:111274697-111290872:+|nuORF;REV__nc|ENSG00000213995|Q8IW45-2|NAXD;REV__nc|ENSG00000213995|Q8IW45-3|NAXD;REV__nc|ENSG00000213995|Q8IW45-4|NAXD;REV__nc|ENSG00000213995|Q8IW45|NAXD 1.6526216038709556 0.33876987398426067 1 {I|L} 1 -1 6.9897 0 0 0.6567 0 0 183.90070255830966 764.3623140924436 948.2630166507533 0 0 0 0 0 0 0 0 0 {I|L} 0.6567 - 2 + NaN NaN 79135.3 NaN 2462 1810 4272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4275 29.926 NaN 32334 35 0 6625 0.261 + 20715 PFVCWWRYWWH 11 18 555.9242802698448 NaN 0 555.7723388671875 PEAK HCD FTMS 0 0 0 4272 2039.683349609375 1 0 0 3 Unmodified _PFVCWWRYWWH_ ENST00000410111.7_1_2:86406577-86422494:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91518.6 NaN 2463 1810 4272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4277 29.932 NaN 90013 35 0 7232.3 0.327 + 24883 RYQKSTELL 9 44 569.3168389285939 1136.6191249239878 2 569.316650390625 MULTI HCD FTMS 0 0 0 4276 66232.3515625 0.7758856559637302 -1 0.013484954833984375 1 Unmodified _RYQKSTELL_ ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000168148|ENST00000366696|H3-4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000188375|ENST00000340398|H3-5;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000273983|ENST00000614378|H3C8;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000277775|ENST00000618052|H3C7;ENSG00000278828|ENST00000685041|H3C10;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;nc|ENSG00000273213|Q5TEC6|H3-7 31.26834338654808 0.10542797264966089 1 [YR]QKSTE{I|L}{I|L} 9 0 + 67.669 0 0 5.9535 5.9535 87.876 0 0 0 7.147642715192504 62.18433447093204 7.147642715192504 9.208187539523749 0 0.5 0 0.805462187404089 0 + + [YR]QKSTE{I|L}{I|L};[YR][AG]KSTE{I|L}{I|L};[YR]QKS{I|L}{[ET]|[MV]}{I|L};[YR][AG]KS{I|L}{[ET]|[MV]}{I|L} 5.9535;5.1434;3.2641;2.454 +;-;-;- + 94 NaN NaN 111093.1 NaN 2464 1811 4276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4278 29.936 NaN 71098 35 0 11075 0.261 -1 LPTENVDKM 9 34 531.7605686667881 1061.5065844003761 2 531.76025390625 MULTI HCD FTMS 0 0 0 4276 45661.36328125 0.4049539710907437 -5 0.12014007568359375 2 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 33.4449034751529 0.0954363425218424 1 VN{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 5 -1 38.672 0 0 3.6431 0 0 408.16746718574376 0 408.16746718574376 0 2.2184874961635614 0 0 0 0.4247425010840047 0 0 0.4247425010840047 VN{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 3.6431 - 43 NaN NaN 108712 NaN 2465 1811 4276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4279 29.94 NaN 66988 35 0 6304.4 0.261 -1 PSLTGCRSDI 10 36 553.2671672627225 NaN 0 553.2657470703125 PEAK HCD FTMS 0 0 0 4276 17885.90234375 0.4908936097400997 46 -0.8896102905273438 3 Carbamidomethyl (C) _PSLTGC(Carbamidomethyl (C))RSDI_ ENSG00000131788|ENST00000393045|PIAS3 5.296884461304476 0.3356508900602619 1 Y 1 -1 4.6041 0 0 0.41684 0 0 455.2380565940012 483.18256555728755 938.4206221512887 0 0 0 0 0 0 0 0 0 Y 0.41684 - 4 + NaN NaN 94752.7 NaN 2466 1811 4276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4280 29.943 NaN 23058 35 0 4001.1 0.261 -1 PDQAGHRKNM 10 21 585.2794935950617 1168.5444342569233 2 585.2783203125 MULTI HCD FTMS 0 0 0 4276 7336.4736328125 0.723563544308479 4 -0.08376693725585938 4 Oxidation (M) _PDQAGHRKNM(Oxidation (M))_ ENSG00000163053|ENST00000295190|SLC16A14;nc|ENSG00000163053|Q7RTX9-2|SLC16A14 1.3295316138638542 0.46826628246186464 1 W 1 -1 3.0989 0 0 0.2652 0 0 512.5781999813358 466.87070642642817 979.4489064077641 0 0 0 0 0 0 0 0 0 W 0.2652 - 1 + NaN NaN 83833.8 NaN 2467 1811 4276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4281 29.946 NaN 27612 35 0 3176.9 0.262 -1 VAVMPEPSM 9 21 496.72536865251305 991.4361843718261 2 496.7253112792969 MULTI HCD FTMS 0 0 0 4276 8539.8203125 0.9800107428514818 2 -0.03369331359863281 5 2 Oxidation (M) _VAVM(Oxidation (M))PEPSM(Oxidation (M))_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-9|SON 4.3292370932331545 0.3181982124262546 1 S{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.6338 0 0 739.3581031724106 0 739.3581031724106 0 16.197887582883936 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.6338 + + 7 + NaN NaN 83692.2 NaN 2468 1811 4276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4282 29.95 NaN 12724 35 0 4578.4 0.261 + -1 SSTRTCSKMQ 10 10 601.2686157226562 NaN 0 601.2686157226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _SSTRTC(Carbamidomethyl (C))SKM(Oxidation (M))Q_ REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88833.2 NaN 2469 1811 4276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4284 29.955 NaN 216230 35 0 15129 0.326 + 9221 HPLSDHEATL 10 56 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4283 86649.0546875 0.01478212499800614 90 -1.8270034790039062 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 56.17704186161178 0.05532499666593632 1 EAT{I|L} 4 6 44.412 0 0 3.9706 0 0 686.3132191388687 0 686.3132191388687 0 15.484550065040281 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.9706 + + 132 NaN NaN 110839.7 NaN 2470 1812 4283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4285 29.96 NaN 14688 35 0 3007.3 0.261 + 26614 SWHPKRKEI 9 15 590.8330688476562 NaN 0 590.8330688476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SWHPKRKEI_ ENST00000577538.5_1_18:72347588-72589173:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85497.1 NaN 2471 1812 4283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4287 29.965 NaN 342900 35 0 101220 0.327 + 18794 NADPQAVTM 9 39 481.7160340118904 961.4175150905808 2 481.71588134765625 MULTI HCD FTMS 0 0 0 4286 154276.0625 0.04199111286093668 16 -0.3585224151611328 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 47.7319792270244 0.034743597693959835 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 68.606 0 0 7.1359 7.1359 92.084 0 0 0 1.1928031367991565 1.1928031367991565 1.1928031367991565 13.952424927286842 0 2.8494850021680094 0 0.4247425010840047 0 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};{[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AVT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}YA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{M(Oxidation (M))|F};{[YC]|[HE]}[MD][RK]{M(Oxidation (M))|F};{[QG]|[NA]}D{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PS] 7.1359;5.6847;5.475;1.4796;0.05902 +;-;-;-;- + 106 + NaN NaN 129262.3 NaN 2472 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4288 29.97 NaN 92694 35 0 11034 0.261 + 26320 SSAEVIAQAR 10 29 516.2777887081066 1030.5410244830132 2 516.2777099609375 MULTI HCD FTMS 0 0 0 4286 39797.58984375 0.624890318017335 3 -0.08352470397949219 2 Unmodified _SSAEVIAQAR_ ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2 38.61474834105838 0.1574278268413918 1 V{I|L}AQAR 6 4 55.355 0 0 5.3714 0 0 374.14546401191564 0 374.14546401191564 0 55.35457533920862 0 0 0 2.5 0 0 0 + V{I|L}AQAR 5.3714 + + 57 NaN NaN 95555.3 NaN 2473 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4289 29.973 NaN 59863 35 0 9970.4 0.262 + 1908 DAAHPTNVQRL 11 29 407.8825845532845 1220.6259242600536 3 407.8824157714844 MULTI HCD FTMS 0 0 0 4286 33477.77734375 0.17240433073619088 9 -0.2210102081298828 3 Unmodified _DAAHPTNVQRL_ ENSG00000168036|ENST00000349496|CTNNB1 3.5926746625661337 0.403164415885289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 84312.1 NaN 2474 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4290 29.976 NaN 60694 35 0 6176 0.261 + 3515 EIEDEEKTI 9 32 553.2671672627225 NaN 0 553.2675170898438 PEAK HCD FTMS 0 0 0 4286 24775.666015625 0.6799889594821141 48 -0.9326934814453125 4 Unmodified _EIEDEEKTI_ ENSG00000198001|ENST00000613694|IRAK4;nc|ENSG00000198001|Q9NWZ3-2|IRAK4 6.2057823575117 0.2651744870083793 1 T 1 8 10.485 0 0 0.94924 0 0 131.0986944177144 869.3524857439473 1000.4511801616618 0 0 0 0 0 0 0 0.5 0 + T 0.94924 + + 4 + NaN NaN 102713.6 NaN 2475 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4291 29.98 NaN 33440 35 0 5064.2 0.261 -1 FCCRIMAL 8 18 543.7480186282162 1085.4814843232323 2 543.7488403320312 MULTI HCD FTMS 0 0 0 4286 12447.078125 0.40614246032610934 4 -0.10034751892089844 5 2 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))C(Carbamidomethyl (C))RIM(Oxidation (M))AL_ ABCG8|p.A550V|1|0.29|ENSG00000143921|chr2:43875306-43875306|C/T|missense_variant;ENSG00000143921|ENST00000272286|ABCG8;nc|ENSG00000143921|Q9H221-2|ABCG8 5.230669730166228 0.5342319408533849 1 A{I|L} 2 -1 20.969 0 0 1.9318 0 0 883.3475675336359 0 883.3475675336359 0 17.681213534191595 0 0 0 0 0 0 0 A{I|L} 1.9318 + + 1 NaN NaN 101155 NaN 2476 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4292 29.983 NaN 47714 35 0 5625 0.261 -1 0 38 492.70720567342755 983.3998584136551 2 492.7069091796875 MULTI HCD FTMS 0 0 0 4286 16770.65625 0.04977064609441752 15 -0.34506797790527344 6 NaN NaN 1 {[QG]|[NA]}C 3 -1 18.952 0 0 1.9272 0 0 0 692.3024996393186 692.3024996393186 18.952424927286845 0 0 0 0 1 0 0 0 {[QG]|[NA]}C 1.9272 - 10 + NaN NaN 88741.2 NaN 2477 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4293 29.986 NaN 38688 35 0 4838.1 0.261 + -1 FDSLSMWF 8 25 524.7253810561984 1047.4362091791968 2 524.7257690429688 MULTI HCD FTMS 0 0 0 4286 11311.2216796875 0.2578786558052098 40 -0.7855491638183594 7 Oxidation (M) _FDSLSM(Oxidation (M))WF_ REV__ENSG00000203697|ENST00000366872|CAPN8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77338.5 NaN 2478 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4294 29.99 NaN 14742 35 0 4392.2 0.261 + 12025 KHQKYRRY 8 15 589.8299744781802 1177.6453960231604 2 589.8303833007812 MULTI HCD FTMS 0 0 0 4286 8639.015625 0.7606312386196821 5 -0.12714195251464844 8 Unmodified _KHQKYRRY_ REV__nc|ENSG00000188732|A4D161-3|FAM221A 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83254.2 NaN 2479 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4295 29.993 NaN 23032 35 0 4829.5 0.261 + 33481 YHVIWHWE 8 16 585.2794935950617 1168.5444342569233 2 585.2803344726562 MULTI HCD FTMS 0 0 0 4286 6302.521484375 0.6215894735747167 6 -0.14063262939453125 9 Unmodified _YHVIWHWE_ ENSG00000176402|ENST00000312891|GJC3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84630.7 NaN 2480 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4296 29.996 NaN 16457 35 0 3009.6 0.261 -1 0 12 631.0563354492188 NaN 0 631.0563354492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87472.9 NaN 2481 1813 4286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4298 30.002 NaN 22247 35 0 5042.7 0.327 -1 HPPDAVDEPQM 11 14 626.2693313602408 1250.5241097872815 2 626.2695922851562 MULTI HCD FTMS 0 0 0 4297 8271.8759765625 0.6184603199091936 7 -0.15439224243164062 1 Oxidation (M) _HPPDAVDEPQM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 4.5288652416199255 0.3990586020344083 1 E[QP]{M(Oxidation (M))|F} 4 -1 21.198 0 0 1.6951 0 0 731.3256703107437 0 731.3256703107437 0 21.197887582883936 0 0 0 0.5 0 0 0 E[QP]{M(Oxidation (M))|F} 1.6951 + + 2 NaN NaN 90120 NaN 2482 1814 4297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4299 30.006 NaN 56858 35 0 16257 0.263 -1 AALMLYRH 8 30 495.7643097186189 989.5140665040378 2 495.76470947265625 MULTI HCD FTMS 0 0 0 4297 6912.38232421875 0.6524997552531162 -1 0.03653717041015625 2 Oxidation (M) _AALM(Oxidation (M))LYRH_ ENSG00000134569|ENST00000378623|LRP4 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.31318 0 0 587.3235585468097 252.1362703912719 839.4598289380816 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.31318 + + 1 + NaN NaN 92294.1 NaN 2483 1814 4297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4300 30.01 NaN 45916 35 0 10822 0.261 + -1 MWRRWMMCRDL 11 24 566.9203902723686 1697.7393414173057 3 566.9207153320312 MULTI HCD FTMS 0 0 0 4297 19265.34765625 1 0 0 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))WRRWMMC(Carbamidomethyl (C))RDL_ REV__ENST00000393104.6_1_10:112641263-112642826:+|nuORF 0 0.41892066650488113 1 D 1 -1 4.6041 0 0 0.27119 0 0 987.419957727656 592.2581881158811 1579.678145843537 0 0 0 0 0 0 0 0 0 D 0.27119 + + 1 + NaN NaN 93194.3 NaN 2484 1814 4297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4302 30.015 NaN 301450 35 0 94222 0.327 + 30598 VPATDRNAL 9 39 478.76178610444094 955.5090192756819 2 478.761474609375 MULTI HCD FTMS 0 0 0 4301 176688.203125 0.8243914050174822 -1 0.013536453247070312 1 Unmodified _VPATDRNAL_ ENSG00000104408|ENST00000220849|EIF3E 32.78568957990786 0.09846250359632436 1 VPAT 4 5 66.983 0 0 7.0101 0 0 0 584.2792452447874 584.2792452447874 49.02372200412145 0 0 0 0 1 1.6989700043360187 0.805462187404089 0 + VPAT 7.0101 + + 20 + NaN NaN 124022.9 NaN 2485 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4303 30.02 NaN 138520 35 0 26861 0.261 + 2628 DVAQWLANSR 10 45 580.2963278506952 NaN 0 580.306884765625 PEAK HCD FTMS 0 0 0 4301 2753.658447265625 0.4256151692632912 11 -0.2647285461425781 2 Unmodified _DVAQWLANSR_ REV__nc|ENSG00000099869|Q6U949|IGF2-AS 11.494710602746466 0.33034640988000663 1 G 1 -1 6.9897 0 0 0.6033 0 0 174.09401080456286 924.4489229791624 1098.5429337837252 0 0 0 0 0 0 0 0 0 G 0.6033 - 36 + NaN NaN 125844.1 NaN 2486 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4304 30.023 NaN 111800 35 0 15204 0.263 -1 MLDILMDYCH 10 26 442.8556870888568 1325.5452318667706 3 442.8559875488281 MULTI HCD FTMS 0 0 0 4301 55993.53515625 0.7404705072126724 9 -0.22121047973632812 3 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 3.3196427980023873 0.4577323075863651 1 DPE 3 -1 31.198 0 0 2.3536 0 0 966.3962036325626 0 966.3962036325626 0 25.511525224473814 0 0 0 0.5 0 0 0 DPE 2.3536 - 9 NaN NaN 93404.7 NaN 2487 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4305 30.027 NaN 46092 35 0 7851.7 0.261 -1 RRLVNSQCEF 10 34 436.886687560501 NaN 0 436.8792419433594 PEAK HCD FTMS 0 0 0 4301 1804.2181396484375 0.907190699858368 -2 0.05007362365722656 4 Carbamidomethyl (C) _RRLVNSQC(Carbamidomethyl (C))EF_ ENSG00000166164|ENST00000394688|BRD7;ENST00000466133.1_1_3:159819443-159820214:+|nuORF;nc|ENSG00000166164|Q9NPI1-2|BRD7 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93203 NaN 2488 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4306 30.03 NaN 42369 35 0 4734 0.261 + 25380 SEGDITQKGY 10 25 549.25919435742 1096.50383578164 2 549.259521484375 MULTI HCD FTMS 0 0 0 4301 17715.169921875 1 0 0 5 Unmodified _SEGDITQKGY_ DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A 20.580933911654288 0.31860490502175054 1 TQKGY 5 5 20.618 0 0 1.8803 0 0 501.205370017775 0 501.205370017775 0 13.627815773883327 0 0 0 0.8935078169319297 0 0 0 + TQKGY 1.8803 + + 6 NaN NaN 84111 NaN 2489 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4307 30.033 NaN 36841 35 0 4303.2 0.261 -1 HAMVVKPC 8 29 471.2380097101038 940.4614664870077 2 471.2377014160156 MULTI HCD FTMS 0 0 0 4301 17759.998046875 0.16895648356307003 9 -0.22121047973632812 6 Carbamidomethyl (C) _HAMVVKPC(Carbamidomethyl (C))_ ATP13A4|p.A585G|1|0.07|ENSG00000127249|chr3:193457386-193457386|G/C|missense_variant;ATP13A4|p.P573L|1|0.06|ENSG00000127249|chr3:193457422-193457422|G/A|missense_variant;ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;OPA1-ATP13A4|1|fusion 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97759.7 NaN 2490 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4308 30.037 NaN 30886 35 0 4655.7 0.261 + -1 CELCAYPK 8 21 513.2267955594655 NaN 0 513.2411499023438 PEAK HCD FTMS 0 0 0 4301 2103.03466796875 0.22237469949574248 -15 0.31700897216796875 7 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))ELCAYPK_ REV__ENSG00000142409|ENST00000610935|ZNF787;REV__ENSG00000196391|ENST00000354377|ZNF774;REV__ZNF787|p.T117M|1|0.38|ENSG00000142409|chr19:56088822-56088822|G/A|missense_variant 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102245.1 NaN 2491 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4309 30.04 NaN 26923 35 0 5098 0.261 + -1 FCASKMSM 8 20 497.1950571927297 992.3755614522594 2 497.1949157714844 MULTI HCD FTMS 0 0 0 4301 6244.2265625 0.39376264900453445 16 -0.34184837341308594 8 Carbamidomethyl (C),2 Oxidation (M) _FC(Carbamidomethyl (C))ASKM(Oxidation (M))SM(Oxidation (M))_ REV__ENSG00000120008|ENST00000263461|WDR11;REV__ENST00000497136.6_1_10:122626245-122665534:+|nuORF;REV__WDR11-PDLIM1|1|fusion 3.944395688203298 0.5361403129012058 1 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.6169 0 0 740.2983265607437 0 740.2983265607437 0 25.969100130080562 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.6169 + + 2 NaN NaN 86512.7 NaN 2492 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4310 30.043 NaN 28596 35 0 11500 0.261 -1 0 21 510.0301513671875 NaN 0 510.0301513671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 1 {I|L} 1 -1 1.5938 0 0 0.15655 0 0 735.5674973126969 166.36858545474846 901.9360827674453 0 0 0 0 0 0 0 0 0 {I|L} 0.15655 - 1 + NaN NaN 82292.3 NaN 2493 1815 4301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4312 30.049 NaN 33920 35 0 6423.5 0.327 + -1 FYERCVSCC 9 22 640.7462750483128 1279.4779971634255 2 640.7472534179688 MULTI HCD FTMS 0 0 0 4311 10322.8017578125 0.6188928634410342 -4 0.09372138977050781 1 3 Carbamidomethyl (C) _FYERC(Carbamidomethyl (C))VSC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000164603|ENST00000297145|BMT2 0.6014990680409731 0.3464572424761564 1 D 1 -1 6.9897 0 0 0.54629 0 0 80.98487900260382 1080.4354952447877 1161.4203742473915 0 0 0 0 0 0 0 0 0 D 0.54629 - 1 + NaN NaN 87608 NaN 2494 1816 4311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4313 30.053 NaN 28205 35 0 4896.2 0.262 + 25599 SFYMWHKL 8 20 556.2716954967105 NaN 0 556.2711181640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SFYMWHKL_ REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100416.1 NaN 2495 1816 4311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4314 30.057 NaN 27003 35 0 4761.8 0.261 -1 FYNLADCIA 9 17 543.7480186282162 1085.4814843232323 2 543.7471923828125 MULTI HCD FTMS 0 0 0 4311 4148.71484375 0.13537066586316418 7 -0.16094589233398438 3 Carbamidomethyl (C) _FYNLADC(Carbamidomethyl (C))IA_ ENSG00000119285|ENST00000366582|HEATR1 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77645.5 NaN 2496 1816 4311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4315 30.06 NaN 14240 35 0 4009 0.261 + 35365 YYCFYPPHCC 10 15 648.2379760742188 NaN 0 648.2379760742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYCFYPPHCC_ REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89795.2 NaN 2497 1816 4311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4317 30.066 NaN 146480 35 0 23903 0.327 + 16117 LPTENVDKM 9 48 531.7605686667881 1061.5065844003761 2 531.7603759765625 MULTI HCD FTMS 0 0 0 4316 105813.9375 0.9384252047719355 1 -0.02679443359375 1 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 53.31671820480216 0.026930930319421505 1 {I|L}PTENVDK{M(Oxidation (M))|F} 9 0 + 107.12 0 0 10.091 10.091 93.871 0 0 0 87.65662222408956 16.478174818886373 16.478174818886373 9.208187539523749 0 1.774227503252014 1.3979400086720375 0.805462187404089 0 + + {I|L}PTENVDK{M(Oxidation (M))|F};{I|L}PTEGGVDK{M(Oxidation (M))|F} 10.091;9.2239 +;- + 172 + NaN NaN 118169.7 NaN 2498 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4318 30.07 NaN 123230 35 0 22410 0.261 + 26324 SSAPVVVTR 9 35 458.2665739540883 914.5185949749766 2 458.2664489746094 MULTI HCD FTMS 0 0 0 4316 58323.3515625 0.49329595184043656 -3 0.06381034851074219 2 Unmodified _SSAPVVVTR_ ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 14.405379775768559 0.2358970535022398 1 {[CA]|SS}A[VP]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 25.18 0 0 2.7534 2.7534 87.373 0 0 0 18.190221536660903 4.762036441594194 4.762036441594194 25.17992158002109 0 0.3807196863200844 0 0 0 + + {[CA]|SS}A[VP]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.7534 + + 21 + NaN NaN 105388.8 NaN 2499 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4319 30.074 NaN 39833 35 0 4027 0.261 + 19436 NPPRFVRIH 9 26 568.327176376137 1134.639799819074 2 569.3169555664062 MULTI HCD FTMS 0 0 0 4316 2129.28369140625 0.48777970493664125 2 -0.04028511047363281 3 Unmodified _NPPRFVRIH_ REV__ENSG00000104723|ENST00000503731|TUSC3;REV__nc|ENSG00000104723|Q13454-2|TUSC3 2.0597508629832335 0.3354026079994024 1 K 1 -1 3.9794 0 0 0.35072 0 0 559.3210875161427 444.1987398736938 1003.5198273898366 0 0 0 0 0 0 0 0 0 K 0.35072 - 2 + NaN NaN 98293 NaN 2500 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4320 30.077 NaN 50942 35 0 5044.9 0.261 + -1 AMLELEVEE 9 25 552.7608468740823 NaN 0 552.760498046875 PEAK HCD FTMS 0 0 0 4316 17901.3359375 0.9696265320665485 1 -0.02679443359375 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AMLELEVEE_ REV__ENST00000587561.1_1_18:57022651-57022767:-|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99685.6 NaN 2501 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4321 30.08 NaN 36813 35 0 4839 0.261 -1 QGFMVHCF 8 28 492.70720567342755 983.3998584136551 2 493.209228515625 MULTI HCD FTMS 0 0 0 4316 9626.9375 0.05782736748841339 21 -0.40331268310546875 5 Oxidation (M) _QGFM(Oxidation (M))VHCF_ ENST00000418448.1_1_13:57889915-57890026:+|nuORF 2.577480529830294 0.5381683276125971 1 {[QG]|[NA]}D 3 -1 12.447 0 0 1.2657 0 0 0 680.2705834039807 680.2705834039807 8.467874862246562 0 0 0 0 0.5 0 0 0 {[QG]|[NA]}D 1.2657 - 3 + NaN NaN 107145.3 NaN 2502 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4322 30.084 NaN 28856 35 0 4930.9 0.261 -1 DLYVFCYLC 9 27 626.7705688476562 NaN 0 626.7705688476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _DLYVFC(Carbamidomethyl (C))YLC(Carbamidomethyl (C))_ ENSG00000164663|ENST00000682992|USP49;nc|ENSG00000164663|Q70CQ1-2|USP49 0.6014990680409731 0.29233206172879045 1 V 1 -1 0.71334 0 0 0.057229 0 0 950.6013436505874 193.76107202701408 1144.3624156776016 0 0 0 0 0 0 0 0 0 V 0.057229 + + 1 + NaN NaN 102716.1 NaN 2503 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4323 30.087 NaN 12495 35 0 3742 0.262 + -1 MLLMLMVKM 9 10 587.291015625 NaN 0 587.291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 4 Oxidation (M) _M(Oxidation (M))LLM(Oxidation (M))LM(Oxidation (M))VKM(Oxidation (M))_ REV__ENST00000482628.5_1_3:158317956-158320640:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93124 NaN 2504 1817 4316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4325 30.092 NaN 177610 35 0 15935 0.327 + 9222 HPLSDHEATL 10 37 560.2751367728551 1118.5357206125102 2 560.2748413085938 MULTI HCD FTMS 0 0 0 4324 70521.8125 0.012030855399641625 96 -1.9764976501464844 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 56.17704186161178 0.05532499666593632 1 EAT{I|L} 4 6 40.266 0 0 3.5999 0 0 686.3138294904312 0 686.3138294904312 0 11.338031200885155 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.5999 + + 95 NaN NaN 108852.9 NaN 2505 1818 4324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4326 30.097 NaN 46940 35 0 4299.3 0.261 + 19336 NPDEAEKAL 9 32 493.74303460102266 985.4715162688453 2 493.74365234375 MULTI HCD FTMS 0 0 0 4324 28446.94921875 0.09122720616082183 -7 0.16083526611328125 2 Unmodified _NPDEAEKAL_ ENSG00000205937|ENST00000320225|RNPS1;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-2|RNPS1;nc|ENSG00000205937|Q15287-3|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant 19.625955294349634 0.19079243933902879 1 NPDEAS 6 4 33.365 0 0 3.3857 0 0 0 369.2257174127563 369.2257174127563 3.3597908497636553 0 0 0 0 0 0 0 0 NPDEAS 3.3857 - 31 + NaN NaN 84375.3 NaN 2506 1818 4324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4327 30.1 NaN 38153 35 0 11599 0.261 + 9600 HSLEDYRK 8 17 524.2640033554881 NaN 0 524.2844848632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HSLEDYRK_ ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant;ENSG00000187527|ENST00000342358|ATP13A5 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95168 NaN 2507 1818 4324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4329 30.106 NaN 219350 35 0 72245 0.327 + 18795 NADPQAVTM 9 37 481.7160340118904 961.4175150905808 2 481.7158203125 MULTI HCD FTMS 0 0 0 4328 115304.0234375 0.03138363906250298 22 -0.42412567138671875 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 51.41523569358685 0.02959097413485123 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 69.231 0 0 7.2009 7.2009 92.781 0 0 0 10.954839578393347 69.23061874357607 10.954839578393347 16.790521660407123 0 2.274227503252014 0 0 0.7614393726401688 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};{[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AVT{M(Oxidation (M))|F} 7.2009;5.4545 +;- + 50 NaN NaN 112231.6 NaN 2508 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4330 30.11 NaN 36874 35 0 4616 0.261 -1 LTEMVEKRL 9 20 567.8114120292446 1133.608271125289 2 568.3267822265625 MULTI HCD FTMS 0 0 0 4328 3742.10595703125 0.8539210526990187 -1 0.013490676879882812 2 Oxidation (M) _LTEM(Oxidation (M))VEKRL_ ENSG00000101751|ENST00000579534|POLI 1.4819007175156935 0.3397831423917744 1 Y 1 -1 6.9897 0 0 0.61659 0 0 127.06354233802149 840.4549044244749 967.5184467624964 0 0 0 0 0 0 0 0 0 Y 0.61659 - 2 + NaN NaN 83279.9 NaN 2509 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4331 30.114 NaN 65495 35 0 6494.9 0.261 -1 CYLIYFEI 8 35 553.2671672627225 NaN 0 553.2667236328125 PEAK HCD FTMS 0 0 0 4328 13947.248046875 0.38279393502690606 54 -1.052267074584961 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CYLIYFEI_ ENST00000313071.6_1_14:29235028-29235118:+|nuORF 5.760428011301431 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85892.8 NaN 2510 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4332 30.117 NaN 27978 35 0 4517.1 0.261 -1 MPYGSRENSL 10 21 585.2662384943073 1168.5179240554146 2 585.2666015625 MULTI HCD FTMS 0 0 0 4328 16679.9296875 1 0 0 4 Oxidation (M) _M(Oxidation (M))PYGSRENSL_ ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9 1.1933415558491238 0.46898715808974617 1 Y[EP] 3 -1 10.458 0 0 0.89494 0 0 761.3668080060562 0 761.3668080060562 0 10.45757490560675 0 0 0 0 0 0 0 Y[EP] 0.89494 - 1 NaN NaN 77009.5 NaN 2511 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4333 30.121 NaN 54128 35 0 5708.5 0.262 + 19374 NPEDKSPQL 9 20 514.2564742715194 1026.4983956098388 2 514.2562866210938 MULTI HCD FTMS 0 0 0 4328 23036.5234375 0.7105006841039636 -2 0.04028511047363281 5 Unmodified _NPEDKSPQL_ ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ 5.296884461304476 0.3108627248283497 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88556.9 NaN 2512 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4334 30.124 NaN 22035 35 0 5576.9 0.261 -1 TWMRMSQGVC 10 17 644.2675996732976 NaN 0 644.2672119140625 PEAK HCD FTMS 0 0 0 4328 12346.732421875 0.5868190505259117 -1 0.013490676879882812 6 Carbamidomethyl (C),2 Oxidation (M) _TWM(Oxidation (M))RM(Oxidation (M))SQGVC(Carbamidomethyl (C))_ nc|ENSG00000143847|O75335|PPFIA4 1.6526216038709556 0.33876987398426067 1 Y 1 -1 4.6041 0 0 0.35787 0 0 661.2742607706201 459.1624849908813 1120.4367457615015 0 0 0 0 0 0 0 0 0 Y 0.35787 - 1 + NaN NaN 81359.6 NaN 2513 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4335 30.127 NaN 30433 35 0 10725 0.262 + 14506 LFCFVRRD 8 24 528.2754680921927 NaN 0 528.7640991210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LFCFVRRD_ REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86597.3 NaN 2514 1819 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4337 30.133 NaN 31011 35 0 4733.1 0.327 -1 AGVGDMVM 8 30 406.16875264463476 810.3229523560695 2 406.1698303222656 MULTI HCD FTMS 0 0 0 4336 14750.947265625 0.6259246962819212 5 -0.12065696716308594 1 2 Oxidation (M) _AGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 18.13498045792455 0.4603629008820478 1 V{M(Oxidation (M))|F} 2 -1 28.711 0 0 3.5432 0 0 546.2088909320446 0 546.2088909320446 0 20.639406530592268 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 3.5432 + + 6 + NaN NaN 91816.8 NaN 2515 1820 4336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4338 30.137 NaN 30820 35 0 5479.6 0.261 -1 0 19 469.32875587593486 468.32147940933487 1 469.32818603515625 MULTI HCD FTMS 0 0 0 4336 12202.0654296875 0.6372608521492744 -4 0.08390235900878906 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 100917.2 NaN 2516 1820 4336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4339 30.141 NaN 38801 35 0 4723.4 0.261 -1 QPMQPTPSM 9 24 524.7253810561984 1047.4362091791968 2 524.7261962890625 MULTI HCD FTMS 0 0 0 4336 8648.71484375 0.19717754823548228 47 -0.9021186828613281 3 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 3.944395688203298 0.32111559684428237 1 {I|L} 1 -1 2.4743 0 0 0.23622 0 0 541.1891521497031 390.14020715885005 931.3293593085532 0 0 0 0 0 0 0 0 0 {I|L} 0.23622 - 1 + NaN NaN 87505.9 NaN 2517 1820 4336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4340 30.144 NaN 21136 35 0 4868.8 0.261 + -1 ICFFFFLT 8 15 547.7725214593536 1093.530489985507 2 548.2745361328125 MULTI HCD FTMS 0 0 0 4336 4674.423828125 0.09116181342343375 28 -0.5277233123779297 4 Carbamidomethyl (C) _IC(Carbamidomethyl (C))FFFFLT_ REV__ENST00000564697.1_1_6:164506107-164506446:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 80440.9 NaN 2518 1820 4336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4341 30.147 NaN 32666 35 0 6392.6 0.261 + 8031 GGHQHDDNI 9 25 496.71192964138663 991.4093063495733 2 496.7122497558594 MULTI HCD FTMS 0 0 0 4336 4243.8291015625 0.6690248470297719 5 -0.12065696716308594 5 Unmodified _GGHQHDDNI_ ENST00000354955.4_1_1:203310597-203310816:-|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87475.2 NaN 2519 1820 4336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4342 30.151 NaN 16713 35 0 2692.6 0.261 + 15612 LPEDEGHTRTL 11 19 634.317770412277 1266.620987891354 2 634.31787109375 MULTI HCD FTMS 0 0 0 4336 7711.548828125 0.6798565836729406 -4 0.08390235900878906 6 Unmodified _LPEDEGHTRTL_ ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7 1.9275035174196113 0.4104672908605315 1 DE 2 9 9.464 0 0 0.74718 0 0 339.1763600610789 680.3443087213499 1019.5206687824289 0 0 0 0 0 0 0 0 0 + DE 0.74718 + + 4 + NaN NaN 85259.4 NaN 2520 1820 4336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4344 30.156 NaN 200040 35 0 62402 0.327 + 30599 VPATDRNAL 9 41 478.76178610444094 955.5090192756819 2 478.7615051269531 MULTI HCD FTMS 0 0 0 4343 113938.3125 0.5316131120578792 5 -0.12387275695800781 1 Unmodified _VPATDRNAL_ ENSG00000104408|ENST00000220849|EIF3E 26.268140514670165 0.13340543277302316 1 VPAT 4 5 62.423 0 0 6.5329 0 0 0 584.2787569635374 584.2787569635374 51.453650195120844 0 0 0 0 0.5 1.6989700043360187 0.8494850021680094 0 + VPAT 6.5329 + + 12 + NaN NaN 110006.7 NaN 2521 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4345 30.161 NaN 34950 35 0 4316.2 0.261 + 26467 STTQTVHNI 9 27 500.7565380290286 999.4985231248572 2 500.7562255859375 MULTI HCD FTMS 0 0 0 4343 18853.412109375 0.8995024800518179 1 -0.030080795288085938 2 Unmodified _STTQTVHNI_ REV__ENSG00000166263|ENST00000376352|STXBP4 1.844237919475145 0.33703635659052655 1 Q 1 -1 6.9897 0 0 0.69932 0 0 149.10577517739472 719.3116549127561 868.4174300901509 0 0 0 0 0 0 0 0 0 Q 0.69932 + + 2 + NaN NaN 89839.3 NaN 2522 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4346 30.164 NaN 63693 35 0 5056 0.261 + 25240 SASLYFTCTL 10 33 553.2671672627225 NaN 0 553.2681884765625 PEAK HCD FTMS 0 0 0 4343 21895.005859375 0.600926822422522 56 -1.0723686218261719 3 Unmodified _SASLYFTCTL_ ENSG00000042832|ENST00000220616|TG;nc|ENSG00000042832|P01266-2|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant 10.073929032068715 0.33156240198919784 1 C 1 9 9.6041 0 0 0.86953 0 0 131.10021348673132 867.3839205377561 998.4841340244875 0 0 0 0 0 0.5 0 0 0 + C 0.86953 + + 3 + NaN NaN 99502.2 NaN 2523 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4347 30.168 NaN 58646 35 0 14674 0.261 + 21300 PSARLSVNP 9 19 470.76403263596995 939.5135123387399 2 470.76409912109375 MULTI HCD FTMS 0 0 0 4343 20591.69140625 1 0 0 4 Unmodified _PSARLSVNP_ ENST00000263277.7_1_19:48216758-48219882:+|nuORF 3.5964929083625545 0.32375295897743744 1 {[SA]|[TG]}A 3 7 15.458 0 0 1.6453 0 0 0 707.3845478012555 707.3845478012555 15.45757490560675 0 0 0 0 0.5 0 0 0 {[SA]|[TG]}A 1.6453 - 5 + NaN NaN 86197.1 NaN 2524 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4348 30.171 NaN 29599 35 0 4827.4 0.261 + 3502 EHWLFHDD 8 22 549.7346526733741 1097.454752413548 2 549.734619140625 MULTI HCD FTMS 0 0 0 4343 13168.625 0.8756967429652923 -10 0.2246227264404297 5 Unmodified _EHWLFHDD_ ENSG00000189056|ENST00000428762|RELN;nc|ENSG00000189056|P78509-2|RELN;nc|ENSG00000189056|P78509-3|RELN;RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76061.3 NaN 2525 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4349 30.174 NaN 24400 35 0 5545.4 0.261 -1 VCAYFCHC 8 15 558.7078217421285 1115.401090551057 2 558.707763671875 MULTI HCD FTMS 0 0 0 4343 5632.5625 0.5533096445921367 1 -0.030080795288085938 6 3 Carbamidomethyl (C) _VC(Carbamidomethyl (C))AYFC(Carbamidomethyl (C))HC(Carbamidomethyl (C))_ ENST00000261942.6_1_5:175934624-175934870:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91637.9 NaN 2526 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4350 30.178 NaN 30715 35 0 5113 0.261 + 19432 NPMTKEPKL 9 19 529.2889166925597 1056.5632804519194 2 529.2885131835938 MULTI HCD FTMS 0 0 0 4343 4026.69384765625 0.2988480967392034 -4 0.09058189392089844 7 Unmodified _NPMTKEPKL_ ENSG00000136731|ENST00000259253|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF;nc|ENSG00000136731|Q9NYU2-2|UGGT1 3.2813086475875832 0.32614229037259 1 D 1 9 11.99 0 0 1.1348 0 0 585.302887240785 353.21933923892817 938.5222264797133 0 0 0 0 0 0.5 0 0 0 D 1.1348 - 3 + NaN NaN 105118.8 NaN 2527 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4351 30.181 NaN 19829 35 0 4513.3 0.261 + -1 KLMLFVDRAA 10 18 590.3317179821314 NaN 0 590.331787109375 PEAK HCD FTMS 0 0 0 4343 5740.716796875 0.8316250707522179 1 -0.030080795288085938 8 Oxidation (M) _KLM(Oxidation (M))LFVDRAA_ REV__ENSG00000068796|ENST00000407818|KIF2A;REV__nc|ENSG00000068796|O00139-1|KIF2A;REV__nc|ENSG00000068796|O00139-2|KIF2A;REV__nc|ENSG00000068796|O00139-5|KIF2A;REV__nc|ENSG00000068796|O00139|KIF2A 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84147 NaN 2528 1821 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4353 30.186 NaN 173070 35 0 36173 0.327 + 15613 LPEDEGHTRTL 11 35 423.2139678850877 1266.6200742554631 3 423.21392822265625 MULTI HCD FTMS 0 0 0 4352 86765.6953125 1 0 0 1 Unmodified _LPEDEGHTRTL_ ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7 23.015651743759182 0.2565462835198615 1 {I|L}P 2 9 38.979 0 0 3.0774 0 0 0 1053.4610849154615 1053.4610849154615 31.989700043360187 0 0 0 0 0.5 1.3010299956639813 0 0 + {I|L}P 3.0774 + + 3 + NaN NaN 109255.4 NaN 2529 1822 4352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4354 30.191 NaN 85158 35 0 10567 0.261 -1 MLDILMDYCH 10 31 442.8556870888568 1325.5452318667706 3 442.85601806640625 MULTI HCD FTMS 0 0 0 4352 25129.044921875 0.33231187470387574 16 -0.2826499938964844 2 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 3.5870582119611467 0.4563168352879256 1 [DP]{M(Oxidation (M))|F} 3 -1 10.686 0 0 0.80619 0 0 0 963.3738506013987 963.3738506013987 10.686362358410124 0 0 0 0 0.5 0 0 0 [DP]{M(Oxidation (M))|F} 0.80619 - 4 NaN NaN 87308.1 NaN 2530 1822 4352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4355 30.194 NaN 37650 35 0 5124.1 0.261 -1 0 20 525.266396511653 1048.518240090106 2 525.26611328125 MULTI HCD FTMS 0 0 0 4352 1850.0482177734375 0.1620010105131161 6 -0.12405776977539062 3 NaN NaN 1 {I|L}[C(Carbamidomethyl (C))S] 3 -1 8.9524 0 0 0.85382 0 0 670.3763294904312 0 670.3763294904312 0 8.952424927286843 0 0 0 0 0 0 0 {I|L}[C(Carbamidomethyl (C))S] 0.85382 - 2 NaN NaN 86496.1 NaN 2531 1822 4352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4356 30.198 NaN 42485 35 0 5257.1 0.262 -1 MWVSWAPGLW 10 24 425.5385744217782 1273.5938938655347 3 425.538818359375 MULTI HCD FTMS 0 0 0 4352 5640.43359375 0.2245821254246636 5 -0.11056709289550781 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MWVSWAPGLW_ COL16A1|p.E250Rfs*13|1|0.25|ENSG00000084636|chr1:31697080-31697081|-/G|frameshift_variant;ENSG00000084636|ENST00000373672|COL16A1;nc|ENSG00000084636|Q07092-2|COL16A1 0.6976657623105312 0.47161084886498755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93629.8 NaN 2532 1822 4352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4357 30.201 NaN 28787 35 0 5420 0.261 -1 QQMEDPET 8 26 497.19536845294596 NaN 0 497.1955871582031 PEAK HCD FTMS 0 0 0 4352 4641.951171875 0.6521791267906477 -1 0.030080795288085938 5 Oxidation (M) _QQM(Oxidation (M))EDPET_ ENST00000467590.1_1_X:13681667-13684537:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82544.8 NaN 2533 1822 4352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4358 30.204 NaN 14768 35 0 2816.1 0.261 + 23278 RHFLQRTW 8 15 572.3133183792884 1142.6120838253767 2 572.3134765625 MULTI HCD FTMS 0 0 0 4352 7370.4912109375 0.7607903108437308 -1 0.030080795288085938 6 Unmodified _RHFLQRTW_ REV__DNAH5|p.A630T|1|0.2|ENSG00000039139|chr5:13901416-13901416|C/T|missense_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105554.1 NaN 2534 1822 4352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4360 30.21 NaN 144490 35 0 30588 0.327 + 26325 SSAPVVVTR 9 24 458.2665739540883 914.5185949749766 2 458.2664794921875 MULTI HCD FTMS 0 0 0 4359 92092.515625 0.7789138301479903 3 -0.07033157348632812 1 Unmodified _SSAPVVVTR_ ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 37.07464296494664 0.07877380486334713 1 {[CA]|SS}APVVV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 52.725 0 0 5.7654 5.7654 92.487 0 0 0 45.73576872189598 5.6424927368725974 5.6424927368725974 52.72546876525617 0 1.6861818737241734 0 0 0 + + {[CA]|SS}APVVV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.7654 + + 41 + NaN NaN 102896.7 NaN 2535 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4361 30.214 NaN 26296 35 0 4923.7 0.261 + -1 AMQRAQRC 8 21 531.747988437974 NaN 0 531.76025390625 PEAK HCD FTMS 0 0 0 4359 1892.416748046875 0.8321647285587926 -3 0.07704353332519531 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))AMQRAQRC(Carbamidomethyl (C))_ REV__ENST00000436842.5_1_2:3593081-3593171:-|nuORF 0.6903765706972694 0.38822285293237185 1 N 1 -1 6.9897 0 0 0.65849 0 0 530.7593913273166 413.6569918268188 944.4163831541355 0 0 0 0 0 0 0 0 0 N 0.65849 - 1 + NaN NaN 85422.8 NaN 2536 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4362 30.218 NaN 25953 35 0 5413.5 0.261 + -1 CCLFCFDLR 9 17 645.776162441888 1289.537771950576 2 645.7765502929688 MULTI HCD FTMS 0 0 0 4359 12910.4052734375 0.8182559785846363 -2 0.05354118347167969 3 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))LFC(Carbamidomethyl (C))FDLR_ REV__ENST00000569693.5_1_15:73044462-73044504:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90627.8 NaN 2537 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4363 30.221 NaN 48353 35 0 7483.9 0.264 + 21820 QAQSPETSV 9 23 473.7273414937991 945.4401300543982 2 473.7269592285156 MULTI HCD FTMS 0 0 0 4359 17034 0.8970098601672201 -1 0.02346038818359375 4 Unmodified _QAQSPETSV_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.I202Yfs*2|1|0.31|ENSG00000116044|chr2:177231999-177232000|-/A|frameshift_variant 12.240655878213236 0.2545997876781172 1 SV 2 7 25.969 0 0 2.7468 0 0 741.3280506818375 0 741.3280506818375 0 25.969100130080562 0 0 0 0.5 0 0 0 + SV 2.7468 + + 2 NaN NaN 88405 NaN 2538 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4364 30.224 NaN 21109 35 0 5815.4 0.261 + -1 EEECNEEWR 9 15 640.7462750483128 1279.4779971634255 2 640.7460327148438 MULTI HCD FTMS 0 0 0 4359 10326.7265625 0.6191281710317913 3 -0.07033157348632812 5 Carbamidomethyl (C) _EEEC(Carbamidomethyl (C))NEEWR_ REV__ENSG00000161860|ENST00000293695|SYCE2 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84039.9 NaN 2539 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4365 30.228 NaN 40687 35 0 7685.7 0.261 + 26454 STRRNSRPW 9 24 580.3069505087881 1158.599348084376 2 580.3070678710938 MULTI HCD FTMS 0 0 0 4359 12244.6044921875 0.1409266861017788 7 -0.12418746948242188 6 Unmodified _STRRNSRPW_ REV__ENST00000216962.8_1_20:25263872-25264788:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90578.4 NaN 2540 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4366 30.231 NaN 16591 35 0 4421.6 0.261 + 9520 HQQELEILK 9 16 569.3168389285939 1136.6191249239878 2 569.3167724609375 MULTI HCD FTMS 0 0 0 4359 16232.015625 0.1901516070878469 11 -0.2045135498046875 7 Unmodified _HQQELEILK_ ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90947.7 NaN 2541 1823 4359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4368 30.237 NaN 448380 35 0 40132 0.327 + 19337 NPDEAEKAL 9 65 493.74303460102266 985.4715162688453 2 493.7430114746094 MULTI HCD FTMS 0 0 0 4367 298951.96875 0.9587162642862204 -1 0.026813507080078125 1 Unmodified _NPDEAEKAL_ ENSG00000205937|ENST00000320225|RNPS1;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-2|RNPS1;nc|ENSG00000205937|Q15287-3|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant 179.28349886687624 1.1259799814826369E-12 1 [NP]DEAEKA{I|L} 9 0 + 112.52 0 0 11.418 11.418 91.58 0 0 0 4.704999916446795 7.454701011406698 4.704999916446795 4.704999916446795 0 3.079689690656103 1.2218487496163564 1.079689690656103 2.5400990676322905 + + [NP]DEAEKA{I|L};[DP]NEAEKA{I|L};NPDEAEKA{I|L};[DP]GGEAEKA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]AEKA{I|L};[NP]DEA[{I|L}V][QT];[DP]NEA[{I|L}V][QT];[DP]GGEA[{I|L}V][QT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]A[{I|L}V][QT] 11.418;10.941;10.662;8.709;6.834;4.8781;4.4007;2.5234;0.29379 +;-;+;-;-;-;-;-;- + 332 NaN NaN 148545.9 NaN 2542 1824 4367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4369 30.241 NaN 201970 35 0 18565 0.261 + 9223 HPLSDHEATL 10 51 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4367 71736.8203125 0.012238132875693768 102 -2.1620521545410156 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 58.678817012210395 0.04622659334010173 1 {M(Oxidation (M))|F}AT{I|L} 4 7 36.414 0 0 3.2555 0 0 668.30473525215 0 668.30473525215 0 9.247425010840047 0 0 0 0.4247425010840047 0 0.5 0 {M(Oxidation (M))|F}AT{I|L} 3.2555 - 65 NaN NaN 108718.9 NaN 2543 1824 4367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4370 30.245 NaN 56758 35 0 4847.7 0.261 + 9026 HPELHEMTI 9 30 553.7686743843119 1105.5227958354237 2 553.7686157226562 MULTI HCD FTMS 0 0 0 4367 9790.0830078125 0.5181246154137169 15 -0.2588081359863281 3 Unmodified _HPELHEMTI_ REV__ENSG00000186283|ENST00000367627|TOR3A;REV__nc|ENSG00000186283|Q9H497-2|TOR3A;REV__nc|ENSG00000186283|Q9H497-3|TOR3A 2.0597508629832335 0.3354026079994024 1 T 1 -1 10.485 0 0 0.94838 0 0 132.1043911752476 869.355013139434 1001.4594043146817 0 0 0 0 0 0 0 0.5 0 T 0.94838 + + 7 + NaN NaN 83322.8 NaN 2544 1824 4367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4371 30.248 NaN 40475 35 0 10615 0.261 -1 TVNRTVITM 9 27 525.7841490691553 1049.5537452051105 2 525.783935546875 MULTI HCD FTMS 0 0 0 4367 8322.3935546875 0.8317777350714443 -1 0.026813507080078125 4 Oxidation (M) _TVNRTVITM(Oxidation (M))_ DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520836.5_1_5:169174421-169268422:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000134516|Q92608-2|DOCK2 8.745405648335112 0.2847203663274469 1 T{M(Oxidation (M))|F} 2 -1 23.812 0 0 2.2688 0 0 783.4644642560562 0 783.4644642560562 0 23.812281309285623 0 0 0 0.7614393726401688 0 0 0 T{M(Oxidation (M))|F} 2.2688 + + 4 NaN NaN 99509.7 NaN 2545 1824 4367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4373 30.253 NaN 180590 35 0 53878 0.327 + 18796 NADPQAVTM 9 35 481.7160340118904 961.4175150905808 2 481.7159729003906 MULTI HCD FTMS 0 0 0 4372 91253.875 0.024837630038184365 28 -0.4974651336669922 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 40.23920728925047 0.06424668180817725 1 AVT{M(Oxidation (M))|F} 4 5 51.67 0 0 5.3744 0 0 525.2185537642121 0 525.2185537642121 0 51.67017533604145 0 0 0 2 0 0.4247425010840047 0 + AVT{M(Oxidation (M))|F} 5.3744 + + 41 + NaN NaN 119161.5 NaN 2546 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4374 30.258 NaN 60816 35 0 6682.5 0.261 + 19375 NPEDKSPQL 9 29 514.2564742715194 1026.4983956098388 2 514.2561645507812 MULTI HCD FTMS 0 0 0 4372 29997.095703125 0.9251811401154432 4 -0.07043838500976562 2 Unmodified _NPEDKSPQL_ ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ 5.296884461304476 0.3108627248283497 1 H 1 9 2.2185 0 0 0.21612 0 0 530.2712055237045 356.13495813541255 886.406163659117 0 0 0 0 0 0 0 0 0 H 0.21612 - 3 + NaN NaN 89894.2 NaN 2547 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4375 30.261 NaN 117610 35 0 14010 0.261 + 4339 EVVSGVVSK 9 32 452.2606947368968 902.5068365405937 2 452.2601318359375 MULTI HCD FTMS 0 0 0 4372 37611.0078125 0.18545270298484992 -7 0.16094207763671875 3 Unmodified _EVVSGVVSK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 7.101721422024254 0.29718071671418667 1 {NN|[MP]|[D{I|L}]|[EV]}VSRV[KS] 8 2 {NN|[MP]|[D{I|L}]|[EV]} + + 28.416 1.338 0.58657 3.1486 3.1486 59.35 0 0 0 0 6.197887582883936 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}VSRV[KS] 3.1486 - 115 + NaN NaN 100592.7 NaN 2548 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4376 30.265 NaN 63077 35 0 10104 0.261 + 10444 IPDEKETRL 9 32 550.8009133113729 1099.5872736895458 2 550.8007202148438 MULTI HCD FTMS 0 0 0 4372 16885.64453125 0.47247181984813924 -3 0.06707382202148438 4 Unmodified _IPDEKETRL_ ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;nc|ENSG00000135655|Q9Y4E8-4|USP15 9.5439744041441 0.27789851728676895 1 {I|L}PDE 4 5 31.938 0 0 2.9046 0 0 0 642.3578585260374 642.3578585260374 31.84955642535897 0 0 0 0 0 0 0 0 + {I|L}PDE 2.9046 + + 6 + NaN NaN 90790.7 NaN 2549 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4377 30.268 NaN 32653 35 0 9173.3 0.261 + 30146 VGNGFRGCMD 10 15 528.2233191403939 1054.4320853475876 2 528.2229614257812 MULTI HCD FTMS 0 0 0 4372 11936.8017578125 0.6772156674676569 -1 0.0167999267578125 5 Unmodified _VGNGFRGCMD_ ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant 3.2813086475875832 0.45793521633868084 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 79696 NaN 2550 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4378 30.271 NaN 81039 35 0 10367 0.261 + 19469 NPTEPDHAI 9 41 497.23539788887365 992.4562428445473 2 497.2354736328125 MULTI HCD FTMS 0 0 0 4372 28262.16015625 0.1794898301435003 -7 0.16094207763671875 6 Unmodified _NPTEPDHAI_ ENSG00000158435|ENST00000289382|CNOT11 41.8396318013385 0.056899836730939755 1 NPTEK 5 5 49.196 0 0 4.957 0 0 0 420.1515291803344 420.1515291803344 38.738350322034236 0 0 0 0 0.8494850021680094 0 0.9247425010840047 0 NPTEK 4.957 - 28 + NaN NaN 99854.5 NaN 2551 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4379 30.275 NaN 11842 35 0 4340.5 0.261 + 35007 YSYRMLCNW 9 10 618.2686157226562 NaN 0 618.2686157226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YSYRMLCNW_ REV__ENSG00000172954|ENST00000379509|LCLAT1;REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF;REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1;REV__nc|ENSG00000172954|Q6UWP7|LCLAT1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79832.2 NaN 2552 1825 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4381 30.28 NaN 126930 35 0 21197 0.327 -1 0 29 585.927390090582 1754.7603408719458 3 586.2616577148438 MULTI HCD FTMS 0 0 0 4380 42047.56640625 0.7073809958162427 -3 0.07033157348632812 1 NaN NaN 1 NYGGS 5 -1 55.573 0 0 3.167 0 0 0 1273.5584080147332 1273.5584080147332 53.58349385648225 0 0 0 0 1.3807196863200843 0 0.3807196863200844 0 NYGGS 3.167 - 28 + NaN NaN 102235.5 NaN 2553 1826 4380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4382 30.285 NaN 47254 35 0 5479.2 0.261 + -1 MYRVCYNM 8 25 548.224131328155 1094.4337097231098 2 548.223876953125 MULTI HCD FTMS 0 0 0 4380 16061.0498046875 0.5854617032251358 -3 0.07033157348632812 2 Oxidation (M) _MYRVCYNM(Oxidation (M))_ REV__ENSG00000185634|ENST00000332408|SHC4 23.1484247019978 0.4234759064137959 1 YN{M(Oxidation (M))|F} 3 -1 41.682 0 0 3.8086 0 0 652.2809520100224 0 652.2809520100224 0 41.68243764792422 0 0 0 1.4247425010840047 0 0 0.4247425010840047 YN{M(Oxidation (M))|F} 3.8086 + + 28 + NaN NaN 80699.8 NaN 2554 1826 4380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4383 30.288 NaN 59138 35 0 7927.2 0.261 -1 HPTDVDYRVM 10 30 624.7878383510246 1247.561123768849 2 624.7870483398438 MULTI HCD FTMS 0 0 0 4380 30429.271484375 0.5227870838282765 -10 0.2312774658203125 3 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 13.042465956692817 0.38911719078024076 1 T{[ES]|[DT]|[{I|L}C]} 3 -1 17.447 0 0 1.3985 0 0 912.397752830275 0 912.397752830275 0 13.467874862246564 0 0 0 0.5 0 0.5 0 T{[ES]|[DT]|[{I|L}C]} 1.3985 - 5 NaN NaN 91847.6 NaN 2555 1826 4380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4384 30.291 NaN 34527 35 0 8484.6 0.261 + -1 QYHTQCLH 8 22 543.7424926757812 NaN 0 543.7424926757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _QYHTQC(Carbamidomethyl (C))LH_ REV__nc|ENSG00000182149|P53990-3|IST1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78665.1 NaN 2556 1826 4380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4386 30.297 NaN 96501 35 0 8740.6 0.327 + 18429 MPVAEGKSV 9 36 459.2416161696905 916.468679406181 2 459.2414855957031 MULTI HCD FTMS 0 0 0 4385 49834.95703125 1 0 0 1 Unmodified _MPVAEGKSV_ ENSG00000124641|ENST00000265350|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF;nc|ENSG00000288721|Q9H944-2|MED20 28.494509381512117 0.11816142465008336 1 MPVAE[KG][VS] 9 0 + 43.126 0 0 4.7057 4.7057 90.276 0 0 0 37.64190937653879 1.14393726401687 1.14393726401687 43.12645944157907 0 1.5044321917401078 0 0 0 + + MPVAE[KG][VS] 4.7057 + + 49 + NaN NaN 92552.9 NaN 2557 1827 4385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4387 30.301 NaN 62821 35 0 19243 0.261 + 30600 VPATDRNAL 9 17 478.76178610444094 955.5090192756819 2 478.7615661621094 MULTI HCD FTMS 0 0 0 4385 40757.515625 0.19016632110602733 11 -0.17208290100097656 2 Unmodified _VPATDRNAL_ ENSG00000104408|ENST00000220849|EIF3E 8.155526934196011 0.2891920862272901 1 VPAT 4 5 51.938 0 0 5.4357 0 0 0 584.2815645807249 584.2815645807249 51.938200260161125 0 0 0 0 0 2 0 0 + VPAT 5.4357 + + 6 + NaN NaN 97747.9 NaN 2558 1827 4385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4388 30.305 NaN 58139 35 0 7619.6 0.261 + 9510 HPYSMAMRI 9 27 553.2671672627225 NaN 0 553.267822265625 PEAK HCD FTMS 0 0 0 4385 13812.3173828125 0.3790906496419551 62 -1.185760498046875 3 Unmodified _HPYSMAMRI_ REV__ENST00000531579.5_1_11:62564685-62568887:-|nuORF 6.723162845929126 0.26266733336404485 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91016.8 NaN 2559 1827 4385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4390 30.31 NaN 138710 35 0 22502 0.327 -1 HPTDVDYRVM 10 48 416.8605855529177 1247.5599272589532 3 416.8608093261719 MULTI HCD FTMS 0 0 0 4389 37360.59765625 0.6348336506844583 -7 0.15413856506347656 1 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 22.774965066868997 0.29808267786580567 1 DVWV{M(Oxidation (M))|F} 5 -1 36.899 0 0 2.9577 0 0 583.2784695361945 0 583.2784695361945 0 34.90926274548464 0 0 0 1.4247425010840047 0 0 0 DVWV{M(Oxidation (M))|F} 2.9577 - 64 + NaN NaN 98428.1 NaN 2560 1828 4389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4391 30.315 NaN 35203 35 0 7918.3 0.261 + -1 RPVEGSPEM 9 15 530.2424169590352 1058.4702809848702 2 530.241943359375 MULTI HCD FTMS 0 0 0 4389 9871.251953125 0.5523101087412766 1 -0.013454437255859375 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))RPVEGSPEM(Oxidation (M))_ REV__ENST00000254846.9_1_17:7748945-7749936:+|nuORF 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.9353 0 0 893.4243347952203 0 893.4243347952203 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.9353 + + 3 + NaN NaN 89171.1 NaN 2561 1828 4389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4392 30.318 NaN 29274 35 0 10953 0.261 + 25650 SHHECKWW 8 20 556.740683043957 NaN 0 556.7410278320312 PEAK HCD FTMS 0 0 0 4389 4864.69384765625 0.7192194865166736 2 -0.023590087890625 3 Unmodified _SHHECKWW_ REV__ENSG00000054219|ENST00000263636|LY75;REV__ENST00000484559.1_1_2:160728960-160761235:-|nuORF;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__LY75|p.Y933Ifs*2|1|0.33|ENSG00000054219|chr2:159852287-159852288|-/T|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92884.2 NaN 2562 1828 4389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4394 30.324 NaN 27339 35 0 6202.6 0.327 + -1 FDSLSMWF 8 18 524.7253810561984 1047.4362091791968 2 524.7261962890625 MULTI HCD FTMS 0 0 0 4393 4018.805419921875 0.09162265305906168 56 -1.0753631591796875 1 Oxidation (M) _FDSLSM(Oxidation (M))WF_ REV__ENSG00000203697|ENST00000366872|CAPN8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103598.8 NaN 2563 1829 4393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4395 30.328 NaN 11127 35 0 3912.7 0.261 + 19553 NSRSNDTTFLL 11 10 634.3182373046875 NaN 0 634.3182373046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _NSRSNDTTFLL_ REV__CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;REV__CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;REV__CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant;REV__ENSG00000164796|ENST00000297405|CSMD3;REV__nc|ENSG00000164796|Q7Z407-2|CSMD3;REV__nc|ENSG00000164796|Q7Z407-3|CSMD3;REV__nc|ENSG00000164796|Q7Z407-4|CSMD3;REV__nc|ENSG00000164796|Q7Z407-5|CSMD3 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98791.5 NaN 2564 1829 4393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4397 30.334 NaN 71334 35 0 6476.9 0.327 -1 EMDIQSTFNPE 11 29 442.8556870888568 1325.5452318667706 3 442.8558044433594 MULTI HCD FTMS 0 0 0 4396 22824.47265625 0.30183571723902375 24 -0.4336738586425781 1 Oxidation (M) _EM(Oxidation (M))DIQSTFNPE_ ENST00000504636.1_1_5:87565907-87566030:+|nuORF 2.0839675508343545 0.40978109276162705 1 DPE 3 -1 31.198 0 0 2.3536 0 0 966.395037902418 0 966.395037902418 0 31.197887582883936 0 0 0 0.5 0 0 0 DPE 2.3536 - 5 NaN NaN 90076.6 NaN 2565 1830 4396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4398 30.338 NaN 26116 35 0 6433.5 0.261 -1 CIRPWLMQQG 10 15 644.8174665240856 1287.620380114971 2 644.817138671875 MULTI HCD FTMS 0 0 0 4396 9354.1357421875 0.603154114361723 1 -0.023263931274414062 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))IRPWLMQQG_ ENSG00000198919|ENST00000361582|DZIP3 1.4819007175156935 0.4674597685733628 1 Y 1 -1 6.9897 0 0 0.54284 0 0 662.3769952716492 459.16291223697505 1121.5399075086243 0 0 0 0 0 0 0 0 0 Y 0.54284 - 1 + NaN NaN 86847.3 NaN 2566 1830 4396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4399 30.342 NaN 41261 35 0 8241.8 0.264 + -1 CLACDELA 8 22 476.1984329560208 NaN 0 476.1981201171875 PEAK HCD FTMS 0 0 0 4396 15629.7294921875 0.6671364247972936 -50 0.9863319396972656 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LAC(Carbamidomethyl (C))DELA_ REV__ENSG00000159733|ENST00000290974|ZFYVE28;REV__nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;REV__nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;REV__nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28 0.7936320650641473 0.38822285293237185 1 V 1 -1 3.4949 0 0 0.36773 0 0 656.2872640059885 192.00708948306877 848.2943534890572 0 0 0 0 0 0 0 0 0 V 0.36773 - 2 + NaN NaN 84307.7 NaN 2567 1830 4396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4400 30.345 NaN 37611 35 0 6239.9 0.261 -1 AFQRRCHL 8 22 544.2800556443182 NaN 0 544.2802734375 PEAK HCD FTMS 0 0 0 4396 3573.955810546875 0.48285246287716144 1 -0.023263931274414062 4 Carbamidomethyl (C) _AFQRRC(Carbamidomethyl (C))HL_ ENSG00000161791|ENST00000335154|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 2.577480529830294 0.38822285293237185 1 W 1 -1 1.2591 0 0 0.11588 0 0 746.794717146255 150.65242944888908 897.4471465951441 0 0 0 0 0 0 0 0 0 W 0.11588 - 1 + NaN NaN 81117.7 NaN 2568 1830 4396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4401 30.348 NaN 16620 35 0 4896.5 0.261 + 12026 KHQKYRRY 8 16 589.8301380472005 1177.645723161201 2 589.8297729492188 MULTI HCD FTMS 0 0 0 4396 3886.611328125 0.529171589561044 -3 0.03708076477050781 5 Unmodified _KHQKYRRY_ REV__nc|ENSG00000188732|A4D161-3|FAM221A 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88150.9 NaN 2569 1830 4396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4402 30.352 NaN 46616 35 0 10025 0.262 -1 KERCESVL 8 28 510.76072176659966 1019.5068905999993 2 510.7604064941406 MULTI HCD FTMS 0 0 0 4396 4625.22021484375 0.19469820830269394 -5 0.08057403564453125 6 Carbamidomethyl (C) _KERC(Carbamidomethyl (C))ESVL_ ENSG00000145244|ENST00000273857|CORIN;ENST00000503821.5_1_4:47663725-47840047:-|nuORF;nc|ENSG00000145244|Q9Y5Q5-2|CORIN 3.5964929083625545 0.5366564765791996 1 V{I|L} 2 -1 20.969 0 0 2.0568 0 0 789.3398304669937 0 789.3398304669937 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.0568 + + 1 NaN NaN 88155 NaN 2570 1830 4396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4404 30.357 NaN 18398 35 0 4404.1 0.327 + 23847 RRYKFMSR 8 20 572.3133183792884 1142.6120838253767 2 572.3134155273438 MULTI HCD FTMS 0 0 0 4403 4414.546875 0.45567444463966406 7 -0.11173820495605469 1 Unmodified _RRYKFMSR_ ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84439.8 NaN 2571 1831 4403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4405 30.362 NaN 88156 35 0 13984 0.264 + 20773 PGPPGEHL 8 34 402.20612192723263 NaN 0 401.877685546875 PEAK HCD FTMS 0 0 0 4403 1307.274169921875 0.6248413710581693 -10 0.20099258422851562 2 Unmodified _PGPPGEHL_ ENSG00000132470|ENST00000200181|ITGB4 0.7936320650641473 0.38822285293237185 1 R{M(Oxidation (M))|F} 2 8 4.9485 0 0 0.61671 0 0 298.1333914601309 198.0771883600219 496.2105798201528 0 0 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 0.61671 - 5 + NaN NaN 87742.2 NaN 2572 1831 4403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4406 30.365 NaN 11732 35 0 4446.5 0.261 + 12207 KKRYLWFY 8 10 602.3379672110685 1202.661381488937 2 602.3378295898438 MULTI HCD FTMS 0 0 0 4403 4877.48681640625 1 0 0 3 Unmodified _KKRYLWFY_ ENSG00000139144|ENST00000538779|PIK3C2G;nc|ENSG00000139144|O75747-2|PIK3C2G;PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant 0.7936320650641473 0.540814922690045 1 C 1 8 3.0989 0 0 0.25767 0 0 798.4642817348339 298.1581209772094 1096.6224027120434 0 0 0 0 0 0 0 0 0 C 0.25767 - 2 + NaN NaN 75982.2 NaN 2573 1831 4403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4408 30.371 NaN 225030 35 0 22850 0.327 -1 0 46 492.24481769033 491.23754122373003 1 492.2431335449219 MULTI HCD FTMS 0 0 0 4407 122119.6875 0.9246549695563983 1 -0.0267333984375 1 NaN NaN 1 {[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4 -1 + 20.915 0 0 4.2576 4.2576 83.186 0 0 0 11.331969683608154 2.2959853676039366 2.2959853676039366 6.6503780424059045 0 0 1.5228787452803376 0 0 {[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[TV]|[{I|L}S]} 4.2576;2.9038 -;- 12 NaN NaN 119993.6 NaN 2574 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4409 30.375 NaN 204070 35 0 17865 0.261 + 9224 HPLSDHEATL 10 46 560.2751367728551 1118.5357206125102 2 560.275146484375 MULTI HCD FTMS 0 0 0 4407 90717.8046875 0.015476244181447317 110 -2.3143882751464844 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 65.23502041540118 0.023231415588018726 1 EAT{I|L} 4 6 42.652 0 0 3.8132 0 0 686.3131581037125 0 686.3131581037125 0 11.989700043360187 0 0 0 0.4247425010840047 0 1.274227503252014 0 + EAT{I|L} 3.8132 + + 73 NaN NaN 108652.7 NaN 2575 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4410 30.379 NaN 42153 35 0 5043.3 0.262 + -1 LMLCLIEV 8 31 475.25875603628083 948.5029591393617 2 475.25872802734375 MULTI HCD FTMS 0 0 0 4407 12623.4912109375 0.6081660472931965 1 -0.0267333984375 3 Oxidation (M) _LM(Oxidation (M))LCLIEV_ REV__ENSG00000153815|ENST00000537098|CMIP;REV__nc|ENSG00000153815|Q8IY22-2|CMIP;REV__nc|ENSG00000153815|Q8IY22-3|CMIP 5.230669730166228 0.5342319408533849 1 YP 2 -1 25.217 0 0 2.6586 0 0 0 685.3624361627561 685.3624361627561 19.731975075880328 0 0 0 0 0.4247425010840047 0 0 0 YP 2.6586 - 5 + NaN NaN 100763.6 NaN 2576 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4411 30.382 NaN 28719 35 0 5975.9 0.261 -1 CYRACFRQCV 10 22 454.86706845787785 NaN 0 454.866943359375 PEAK HCD FTMS 0 0 0 4407 7898.72705078125 0.3754596403573866 -107 2.022571563720703 4 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85239.2 NaN 2577 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4412 30.385 NaN 24823 35 0 3582 0.261 + 25833 SLTAPSQTMVI 11 26 574.3069382838169 1146.5993236344336 2 574.3064575195312 MULTI HCD FTMS 0 0 0 4407 12124.3486328125 0.8206241679133782 -2 0.036777496337890625 5 Unmodified _SLTAPSQTMVI_ REV__nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;REV__nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7;REV__nc|ENSG00000244437|P01624|IGKV3-15 2.735195868890462 0.4069250265843076 1 E 1 -1 1.5938 0 0 0.139 0 0 591.7737753940024 422.7493990533813 1014.5231744473838 0 0 0 0 0 0 0 0 0 E 0.139 - 1 + NaN NaN 100596.2 NaN 2578 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4413 30.389 NaN 33550 35 0 4166.3 0.261 + -1 FDSLSMWF 8 22 524.7253810561984 1047.4362091791968 2 524.724853515625 MULTI HCD FTMS 0 0 0 4407 4095.18359375 0.09336395929082124 59 -1.1621208190917969 6 Oxidation (M) _FDSLSM(Oxidation (M))WF_ REV__ENSG00000203697|ENST00000366872|CAPN8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78179.8 NaN 2579 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4414 30.392 NaN 17351 35 0 3233.5 0.261 + 8696 HGELQKAILE 10 20 569.3168389285939 1136.6191249239878 2 569.3167114257812 MULTI HCD FTMS 0 0 0 4407 8595.01953125 0.10068723531176492 20 -0.3500232696533203 7 Unmodified _HGELQKAILE_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83642.9 NaN 2580 1832 4407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4416 30.397 NaN 330290 35 0 37682 0.327 + 4340 EVVSGVVSK 9 50 452.2606947368968 902.5068365405937 2 452.26055908203125 MULTI HCD FTMS 0 0 0 4415 188232 0.9281360755412295 1 -0.016815185546875 1 Unmodified _EVVSGVVSK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 33.4449034751529 0.0954363425218424 1 {NN|[MP]|[D{I|L}]|[EV]}VSGVVSK 9 0 + 66.621 0 0 7.3818 7.3818 95.108 0 0 0 30.902435203467178 14.09256854528806 14.09256854528806 45.713337517843655 0 0.3494850021680094 1.154901959985743 0.3494850021680094 0 + + {NN|[MP]|[D{I|L}]|[EV]}VSGVVSK;{NN|[MP]|[D{I|L}]|[EV]}[K{I|L}]{[CP]|[EA]}SK 7.3818;2.3166 +;- + 309 + NaN NaN 142358 NaN 2581 1833 4415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4417 30.402 NaN 192230 35 0 41612 0.261 -1 NADPQAVTM 9 48 481.7160340118904 961.4175150905808 2 481.7159118652344 MULTI HCD FTMS 0 0 0 4415 74143.0625 0.020180380901884776 36 -0.6940250396728516 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 1 AVT{M(Oxidation (M))|F} 4 -1 46.23 0 0 4.8085 0 0 525.2184315412125 0 525.2184315412125 0 34.02372200412145 0 0 0 1.7302046884880937 0 0 0 AVT{M(Oxidation (M))|F} 4.8085 + + 60 NaN NaN 112361.8 NaN 2582 1833 4415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4418 30.405 NaN 190480 35 0 15244 0.261 + 22245 QPADAERAL 9 51 485.75134944570897 969.488145958218 2 485.7511291503906 MULTI HCD FTMS 0 0 0 4415 81638.2265625 0.09953763078771652 -9 0.16088485717773438 3 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 19.361941925380144 0.1930734562688509 1 [QP]ADAERA{I|L} 9 0 + 39.359 0 0 4.0597 4.0597 89.24 0 0 0 5.118252904652472 9.137342758552698 5.118252904652472 39.358500049694534 0 0.3494850021680094 0 0 0 + + [QP]ADAERA{I|L} 4.0597 + + 117 + NaN NaN 128996.5 NaN 2583 1833 4415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4419 30.409 NaN 124760 35 0 24210 0.261 + 13013 KYISKPENL 9 33 546.3086209917907 1090.6026890503813 2 546.3080444335938 MULTI HCD FTMS 0 0 0 4415 75820.8984375 0.23798558492849062 -7 0.11736679077148438 4 Unmodified _KYISKPENL_ ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF 30.7034409873982 0.10802119112323902 1 KY{I|L}S 4 5 43.047 0 0 3.9471 0 0 0 596.3037203424436 596.3037203424436 38.354706403678875 0 0 0 0 1.2614393726401687 0 0 0 + KY{I|L}S 3.9471 + + 37 + NaN NaN 104821.3 NaN 2584 1833 4415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4421 30.414 NaN 253830 35 0 31842 0.327 + 19470 NPTEPDHAI 9 62 497.23539788887365 992.4562428445473 2 497.23529052734375 MULTI HCD FTMS 0 0 0 4420 105469.7890625 0.6698268787466521 2 -0.0335845947265625 1 Unmodified _NPTEPDHAI_ ENSG00000158435|ENST00000289382|CNOT11 71.92227651296345 0.008466197542043549 1 NPTEKQT 7 5 66.518 0 0 6.7024 0 0 0 191.04615198306877 191.04615198306877 47.05440237393161 0 0 0 0 0.9247425010840047 0 1.5189301784845295 0.23965182871044374 NPTEKQT 6.7024 - 204 + NaN NaN 136425.7 NaN 2585 1834 4420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4422 30.419 NaN 149920 35 0 27378 0.261 -1 0 31 585.927390090582 1754.7603408719458 3 585.927490234375 MULTI HCD FTMS 0 0 0 4420 39603.3671875 0.45987282179311384 3 -0.04697608947753906 2 NaN NaN 1 NYGGS 5 -1 51.013 0 0 2.9071 0 0 0 1273.5548561702903 1273.5548561702903 49.41962823435958 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0 NYGGS 2.9071 - 32 + NaN NaN 107899.9 NaN 2586 1834 4420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4423 30.422 NaN 93943 35 0 13773 0.261 -1 HPTDVDYRVM 10 30 624.7878383510246 1247.561123768849 2 624.7874145507812 MULTI HCD FTMS 0 0 0 4420 48420.359375 0.8318811867898823 -2 0.043548583984375 3 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 19.361941925380144 0.3300069447713393 1 HPTD 4 -1 38.928 0 0 3.1203 0 0 0 794.3512667291624 794.3512667291624 28.750612633917 0 0 0 0 0.5 0 0.5 0 HPTD 3.1203 + + 19 + NaN NaN 116453.8 NaN 2587 1834 4420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4424 30.426 NaN 93611 35 0 17286 0.261 + 10445 IPDEKETRL 9 38 550.8009133113729 1099.5872736895458 2 550.8008422851562 MULTI HCD FTMS 0 0 0 4420 32142.583984375 0.8993713637411919 6 -0.08931159973144531 4 Unmodified _IPDEKETRL_ ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;nc|ENSG00000135655|Q9Y4E8-4|USP15 14.957161354070239 0.23112978309247678 1 {I|L}PDEKE 6 3 46.414 0 0 4.2211 0 0 0 385.2203463190063 385.2203463190063 41.81031895404267 0 0 0 0 0.5 0 0.4247425010840047 0 + {I|L}PDEKE 4.2211 + + 28 + NaN NaN 99694.6 NaN 2588 1834 4420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4426 30.431 NaN 68567 35 0 5759.9 0.327 + 17816 MGDPHQQTL 9 36 513.737198732442 1025.459844531684 2 513.7373046875 MULTI HCD FTMS 0 0 0 4425 32872.73828125 0.650332959227052 -1 0.01678466796875 1 Unmodified _MGDPHQQTL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 18.373094154950223 0.20161688160436167 1 QT{I|L} 3 6 30.177 0 0 2.9428 0 0 665.2606068341812 0 665.2606068341812 0 17.730012720637376 0 0 0 0.3494850021680094 0 0.5 0 + QT{I|L} 2.9428 + + 5 NaN NaN 85491.7 NaN 2589 1835 4425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4427 30.436 NaN 127220 35 0 24868 0.261 -1 SSGPVDPMM 9 32 476.69129746160695 951.3680419900139 2 476.6910705566406 MULTI HCD FTMS 0 0 0 4425 32887.1015625 0.12355254862504447 -11 0.19448471069335938 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 16.942295170755138 0.21397866736869717 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DD 4 -1 22.435 0 0 2.3582 0 0 0 424.1843086537229 424.1843086537229 8.455612550363796 0 0 0 0 0.9247425010840047 0 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DD 2.3582 - 12 NaN NaN 94972.3 NaN 2590 1835 4425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4428 30.439 NaN 56758 35 0 5040 0.261 + 2012 DCRQVDKEI 9 31 553.2671672627225 NaN 0 553.2672729492188 PEAK HCD FTMS 0 0 0 4425 22290.302734375 0.6117760771125176 70 -1.4344463348388672 3 Unmodified _DCRQVDKEI_ REV__ENSG00000167037|ENST00000400358|SGSM1;REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF;REV__ENST00000480523.1_1_22:25240737-25320238:+|nuORF;REV__nc|ENSG00000167037|Q2NKQ1-3|SGSM1;REV__nc|ENSG00000167037|Q2NKQ1|SGSM1 6.723162845929126 0.26266733336404485 1 K 1 -1 1.2591 0 0 0.11399 0 0 667.2557873068919 306.1451815240844 973.4009688309764 0 0 0 0 0 0 0 0 0 K 0.11399 + + 1 + NaN NaN 102162.5 NaN 2591 1835 4425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4429 30.442 NaN 21562 35 0 4554.8 0.261 + 25834 SLTAPSQTMVI 11 14 574.3069382838169 1146.5993236344336 2 574.3069458007812 MULTI HCD FTMS 0 0 0 4425 10053.19140625 0.6804400040345997 1 -0.0167999267578125 4 Unmodified _SLTAPSQTMVI_ REV__nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;REV__nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7;REV__nc|ENSG00000244437|P01624|IGKV3-15 2.735195868890462 0.4069250265843076 1 W 1 -1 6.9897 0 0 0.6096 0 0 301.16562109712737 656.3115328424436 957.477153939571 0 0 0 0 0 0 0 0 0 W 0.6096 - 1 + NaN NaN 105937 NaN 2592 1835 4425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4431 30.448 NaN 167840 35 0 24246 0.327 -1 HPTDVDYRVM 10 44 416.8605855529177 1247.5599272589532 3 416.860595703125 MULTI HCD FTMS 0 0 0 4430 43139.3359375 0.7330263389596755 1 -0.013391494750976562 1 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 36.39500950444726 0.17669046703598293 1 VRYDVWV{M(Oxidation (M))|F} 8 -1 54.545 0 0 4.3722 0 0 165.04668918106614 0 165.04668918106614 0 47.55571607740464 0 0 0 1.1677353201839438 0 0.9247425010840047 0 VRYDVWV{M(Oxidation (M))|F} 4.3722 - 124 + NaN NaN 107921.1 NaN 2593 1836 4430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4432 30.452 NaN 119490 35 0 18531 0.261 + 9033 HPEPTDHVL 9 33 522.7591230581315 1043.503693183063 2 522.759033203125 MULTI HCD FTMS 0 0 0 4430 25283 1 0 0 2 Unmodified _HPEPTDHVL_ ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant 11.640296217721598 0.25978676193971967 1 V{I|L} 2 7 20.969 0 0 2.0095 0 0 813.3395674414851 0 813.3395674414851 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 2.0095 + + 4 NaN NaN 99554.1 NaN 2594 1836 4430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4433 30.456 NaN 9147.7 35 0 2493.9 0.261 -1 VPMCEDLELR 10 10 639.2960205078125 NaN 0 639.2960205078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _VPM(Oxidation (M))C(Carbamidomethyl (C))EDLELR_ nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84671.9 NaN 2595 1836 4430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4436 30.469 NaN 264280 35 0 43767 0.327 + -1 EQSCQAQL 8 39 482.21462157703735 962.4146902208747 2 482.2135009765625 MULTI HCD FTMS 0 0 0 4435 87969.375 0.9360975004295958 -1 0.0076999664306640625 1 Carbamidomethyl (C) _EQSC(Carbamidomethyl (C))QAQL_ REV__ENSG00000226321|ENST00000690015|CROCC2 41.8396318013385 0.20729740072799377 1 QAQ{I|L} 4 -1 44.769 0 0 4.6517 0 0 504.16258437324376 0 504.16258437324376 0 17.558261792981398 0 0 0 1.1989700043360187 0 0 0.7742275032520141 QAQ{I|L} 4.6517 + + 80 NaN NaN 112897.1 NaN 2596 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4437 30.473 NaN 68336 35 0 6873.7 0.261 + 17651 LYYQTKKY 8 32 553.798513294232 NaN 0 553.8082885742188 PEAK HCD FTMS 0 0 0 4435 3516.737060546875 1 0 0 2 Unmodified _LYYQTKKY_ NCF2|p.E85K|1|0.06|ENSG00000116701|chr1:183586899-183586899|C/T|missense_variant 2.302733041254933 0.38822285293237185 1 K 1 7 6.9897 0 0 0.63222 0 0 668.3177164304576 306.1460054986938 974.4637219291515 0 0 0 0 0 0 0 0 0 + K 0.63222 + + 1 + NaN NaN 105081.7 NaN 2597 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4438 30.477 NaN 45821 35 0 4942 0.263 + -1 SMRDEPDDDM 10 42 409.4812693407535 1225.4219786224605 3 409.4816589355469 MULTI HCD FTMS 0 0 0 4435 15948.9755859375 0.7062273754716902 -1 0.0076999664306640625 3 Oxidation (M) _SM(Oxidation (M))RDEPDDDM_ REV__ENSG00000119139|ENST00000377245|TJP2;REV__nc|ENSG00000119139|Q9UDY2-2|TJP2;REV__nc|ENSG00000119139|Q9UDY2-3|TJP2;REV__nc|ENSG00000119139|Q9UDY2-4|TJP2;REV__nc|ENSG00000119139|Q9UDY2-5|TJP2;REV__nc|ENSG00000119139|Q9UDY2-6|TJP2;REV__nc|ENSG00000119139|Q9UDY2-7|TJP2 1.5922808571145555 0.4668755089467872 1 M 1 -1 18.979 0 0 1.5488 0 0 1076.3706155626933 0 1076.3706155626933 0 13.494850021680094 0 0 0 0.5 0 0 0 M 1.5488 + + 9 + NaN NaN 96326.6 NaN 2598 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4439 30.48 NaN 33222 35 0 5746.6 0.261 -1 TEMDSHEEKVF 11 26 456.53075301933904 NaN 0 456.53070068359375 PEAK HCD FTMS 0 0 0 4435 6363.08203125 0.4432331866613653 1 -0.026432037353515625 4 Oxidation (M) _TEM(Oxidation (M))DSHEEKVF_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 1.1097533296519684 0.33897209286470975 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86534.5 NaN 2599 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4440 30.483 NaN 37555 35 0 4600.5 0.261 + 8480 HADQAEIRSL 10 22 570.2938518458501 1138.5731507585 2 570.29443359375 MULTI HCD FTMS 0 0 0 4435 15621.5927734375 0.01598537290369264 -10 0.15859222412109375 5 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 12.174745833636585 0.39723355204102767 1 [HA]DQ{[CP]|[EA]}{I|L} 7 3 25.986 0 0 2.2823 0 0 0 371.2038973443969 371.2038973443969 25.985994592184554 0 0 0 0 1 0 0 0 + [HA]DQ{[CP]|[EA]}{I|L} 2.2823 + + 10 + NaN NaN 83816.8 NaN 2600 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4441 30.487 NaN 43175 35 0 4666.4 0.261 + 27815 TAYRQEPIA 9 28 524.7746218006339 1047.5346906680677 2 524.7743530273438 MULTI HCD FTMS 0 0 0 4435 4148.53564453125 0.12051075436585837 -6 0.09822463989257812 6 Unmodified _TAYRQEPIA_ ENSG00000143476|ENST00000366991|DTL 3.5964929083625545 0.32375295897743744 1 R 1 8 2.4743 0 0 0.2362 0 0 542.3131768514646 346.10849939517817 888.4216762466428 0 0 0 0 0 0 0 0 0 + R 0.2362 + + 6 + NaN NaN 87426.4 NaN 2601 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4442 30.49 NaN 48856 35 0 8291.9 0.261 + 9662 HVEYEWRL 8 23 566.2808039776193 NaN 0 566.2815551757812 PEAK HCD FTMS 0 0 0 4435 4101.6630859375 0.6206318838116945 -1 0.0076999664306640625 7 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.38822285293237185 1 R 1 7 4.6041 0 0 0.40724 0 0 391.7166850042634 579.7219942682249 971.4386792724883 0 0 0 0 0 0 0 0 0 + R 0.40724 + + 1 + NaN NaN 100792.3 NaN 2602 1838 4435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4444 30.495 NaN 22678 35 0 6208.1 0.411 + 15735 LPFCMVFCGY 10 17 590.2548768408797 1178.4952007485592 2 590.7572631835938 MULTI HCD FTMS 0 0 0 4443 5210.0419921875 0.41379545435507703 -2 0.03413200378417969 1 Unmodified _LPFCMVFCGY_ ENSG00000069943|ENST00000164305|PIGB 1.844237919475145 0.46554186016084764 1 {I|L}P 2 8 19.464 0 0 1.6516 0 0 0 965.3336886041624 965.3336886041624 19.463950151760656 0 0 0 0 0 0 0 0 + {I|L}P 1.6516 + + 1 + NaN NaN 91725.5 NaN 2603 1839 4443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4446 30.503 NaN 146080 35 0 15076 0.327 -1 CKPCTAGVPAD 11 32 559.7525894527917 1117.4906259723832 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4445 5558.01416015625 0.19157908325302353 43 -0.8520889282226562 1 Carbamidomethyl (C) _CKPC(Carbamidomethyl (C))TAGVPAD_ ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 2.735195868890462 0.4069250265843076 1 TA 2 -1 11.454 0 0 1.0249 0 0 148.0599829026052 794.3215212087869 942.3815041113921 0 0 0 0 0 0 0 0.3494850021680094 0 TA 1.0249 + + 16 + NaN NaN 102361.6 NaN 2604 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4447 30.508 NaN 204360 35 0 36820 0.261 -1 KYLEERAMRQF 11 40 496.2537710537864 1485.7394837615593 3 496.2535705566406 MULTI HCD FTMS 0 0 0 4445 62492.125 0.86035857595724 -3 0.04233551025390625 2 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 3.5926746625661337 0.403164415885289 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5595080525889 1191.5595080525889 6.505149978319906 0 0 0 0 0 0 0 0 KY 1.4114 + + 15 + NaN NaN 114496.2 NaN 2605 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4448 30.511 NaN 95476 35 0 6796.5 0.261 -1 0 38 492.24481769033 491.23754122373003 1 492.24310302734375 MULTI HCD FTMS 0 0 0 4445 46368.80859375 0.3510912136801887 9 -0.17026901245117188 3 NaN NaN 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[TV]|[{I|L}S]} 4 -1 + 14.265 0 0 2.9038 2.9038 82.818 0 0 0 3.0102999566398108 10.285371682087217 3.0102999566398108 8.57840941039747 0 0 0 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[TV]|[{I|L}S]};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 2.9038;1.1576 -;- 11 + NaN NaN 93752.8 NaN 2606 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4449 30.515 NaN 130350 35 0 14615 0.261 + 18457 MPVRAADKL 9 36 500.78410941715276 999.5536659011055 2 500.7839050292969 MULTI HCD FTMS 0 0 0 4445 47356.91796875 0.1780104592884639 -6 0.08931159973144531 4 Unmodified _MPVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 14.405379775768559 0.2358970535022398 1 ADK{I|L} 4 5 33.928 0 0 3.3943 0 0 554.3004017560562 0 554.3004017560562 0 16.938200260161125 0 0 0 0.5 0 0 0 + ADK{I|L} 3.3943 + + 62 NaN NaN 105511.1 NaN 2607 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4450 30.518 NaN 79813 35 0 18636 0.261 + 34846 YRRGLQAI 8 37 488.7879296584103 975.5613063836206 2 488.7874755859375 MULTI HCD FTMS 0 0 0 4445 11141.5126953125 0.5658112858257017 6 -0.1136016845703125 5 Unmodified _YRRGLQAI_ ENSG00000185246|ENST00000355765|PRPF39;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENST00000554429.5_1_14:45565874-45579180:+|nuORF 0.6903765706972694 0.5409681170271811 1 G 1 7 6.9897 0 0 0.71648 0 0 106.04435189318936 809.4778536432249 915.5222055364143 0 0 0 0 0 0 0 0 0 + G 0.71648 + + 2 + NaN NaN 98534.1 NaN 2608 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4451 30.521 NaN 19945 35 0 5709.1 0.261 + 25793 SLLTVHQRIH 10 13 602.3509862167783 1202.6874195003566 2 602.3505249023438 MULTI HCD FTMS 0 0 0 4445 7224.849609375 0.28238619161407313 -5 0.07252693176269531 6 Unmodified _SLLTVHQRIH_ ENSG00000197608|ENST00000594440|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant 4.897010918128616 0.4493830473644964 1 {[TV]|[{I|L}S]}{I|L}TV 5 5 22.218 0 0 1.8474 0 0 0 686.3445528619749 686.3445528619749 22.21848749616356 0 0 0 0 0 0 0 0 + {[TV]|[{I|L}S]}{I|L}TV 1.8474 + + 6 + NaN NaN 96978.5 NaN 2609 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4452 30.525 NaN 12568 35 0 2903.8 0.261 + 1689 CFWLVLHWQG 10 12 644.8179321289062 NaN 0 644.8179321289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _CFWLVLHWQG_ ENST00000492568.1_1_1:230398906-230399248:+|nuORF 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80786.4 NaN 2610 1840 4445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4454 30.53 NaN 17712 35 0 4943.7 0.327 + 12027 KHQKYRRY 8 11 589.8299772510817 NaN 0 589.82958984375 PEAK HCD FTMS 0 0 0 4453 6959.59814453125 0.6392160902494238 1 -0.010082244873046875 1 Unmodified _KHQKYRRY_ REV__nc|ENSG00000188732|A4D161-3|FAM221A 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88419.3 NaN 2611 1841 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4455 30.534 NaN 19932 35 0 3428.5 0.261 + -1 MPLYAEYEL 9 21 572.7646717336106 NaN 0 572.765380859375 PEAK HCD FTMS 0 0 0 4453 5428.23193359375 0.9587009878216638 1 -0.010082244873046875 2 Oxidation (M) _M(Oxidation (M))PLYAEYEL_ REV__ENSG00000164172|ENST00000396954|MOCS2;REV__ENST00000502402.5_1_5:52397160-52403022:-|nuORF;REV__ENST00000508922.5_3_5:52394525-52403022:-|nuORF;REV__ENST00000510818.6_2_5:52396298-52403022:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98687.5 NaN 2612 1841 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4457 30.54 NaN 1262900 35 0 92527 0.327 + 22246 QPADAERAL 9 83 485.75134944570897 969.488145958218 2 485.7511901855469 MULTI HCD FTMS 0 0 0 4456 820174.5 1 0 0 1 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 93.16586880292088 0.00444300900000894 1 QPADAERA{I|L} 9 0 + 75.104 0 0 7.7468 7.7468 96.052 0 0 0 41.74410632329284 9.137342758552691 9.137342758552691 54.96147449519757 0 1.1861818737241734 0 1.4916440611282624 0.2742275032520141 + + QPADAERA{I|L};QPAN{I|L}[NS]N{I|L};QP[KG]NAEN{I|L};{[RE]|[WV]}A{[DA]|[EG]}[QP]A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}[QP]A{I|L};{[DA]|[EG]}A{[RE]|[WV]}[QP]A{I|L};QP[KG]GGAEN{I|L};QP{I|L}{[QG]|[NA]}[NS]N{I|L} 7.7468;2.0776;1.6645;1.4242;1.323;1.2702;0.71468;0.47779 +;-;-;-;-;-;-;- + 632 + NaN NaN 287473.5 NaN 2613 1842 4456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4458 30.544 NaN 360660 35 0 70288 0.261 + 13014 KYISKPENL 9 51 546.3086209917907 1090.6026890503813 2 546.3084106445312 MULTI HCD FTMS 0 0 0 4456 301033.6875 0.9448803651663792 2 -0.046512603759765625 2 Unmodified _KYISKPENL_ ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF 83.42873516780209 0.004742894019233849 1 KY{I|L}S 4 5 52.423 0 0 4.8068 0 0 0 596.305881137253 596.305881137253 34.46054326937343 0 0 0 0 1.4247425010840047 0 0.7742275032520141 0 + KY{I|L}S 4.8068 + + 290 + NaN NaN 137383.2 NaN 2614 1842 4456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4459 30.548 NaN 104890 35 0 18327 0.261 + -1 CTMDSSRTV 9 30 508.211951790556 NaN 0 508.21270751953125 PEAK HCD FTMS 0 0 0 4456 27959.55078125 0.6269188188326714 -157 2.8804359436035156 3 Oxidation (M) _CTM(Oxidation (M))DSSRTV_ REV__ENSG00000176542|ENST00000316407|USF3 2.0597508629832335 0.2852655770354268 1 {I|L} 1 -1 1.9897 0 0 0.19614 0 0 614.2509471828714 284.0504244440063 898.3013716268777 0 0 0 0 0 0 0 0 0 {I|L} 0.19614 - 3 + NaN NaN 99556.1 NaN 2615 1842 4456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4460 30.551 NaN 54456 35 0 6258.8 0.261 + 4341 EVVSGVVSK 9 29 452.2606947368968 902.5068365405937 2 452.2602233886719 MULTI HCD FTMS 0 0 0 4456 26544.97265625 0.1308881951343083 10 -0.1806182861328125 4 Unmodified _EVVSGVVSK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 7.101721422024254 0.29718071671418667 1 {NN|[MP]|[D{I|L}]|[EV]}VSRV[KS] 8 2 {NN|[MP]|[D{I|L}]|[EV]} + + 23.901 1.338 0.58658 2.6483 2.6483 59.081 0 0 0 0 16.91122510072759 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}VSRV[KS] 2.6483 - 55 + NaN NaN 84284.9 NaN 2616 1842 4456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4461 30.554 NaN 76446 35 0 7914.2 0.261 + 34766 YQGRLSAQAK 10 35 561.3067613665692 1120.5989697999382 2 561.3065185546875 MULTI HCD FTMS 0 0 0 4456 18160.130859375 1 0 0 5 Unmodified _YQGRLSAQAK_ REV__ENSG00000160323|ENST00000355699|ADAMTS13;REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13;REV__nc|ENSG00000160323|Q76LX8|ADAMTS13 1.3295316138638542 0.46826628246186464 1 T 1 -1 11.237 0 0 1.0028 0 0 150.16491487912862 866.3630654594755 1016.527980338604 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.0028 - 2 + NaN NaN 101733.8 NaN 2617 1842 4456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4462 30.558 NaN 54497 35 0 9801.8 0.262 -1 CYRACFRQCV 10 32 454.86706845787785 NaN 0 454.8670959472656 PEAK HCD FTMS 0 0 0 4456 16088.3447265625 0.7647465327192633 -97 1.771749496459961 6 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105991.2 NaN 2618 1842 4456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4464 30.563 NaN 200370 35 0 42489 0.327 -1 NADPQAVTM 9 52 481.7160340118904 961.4175150905808 2 481.7160949707031 MULTI HCD FTMS 0 0 0 4463 63633.62890625 0.017319905952054657 46 -0.9193382263183594 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 AVT{M(Oxidation (M))|F} 4 -1 46.23 0 0 4.8085 0 0 525.218065330275 0 525.218065330275 0 31.01342204748164 0 0 0 1.7302046884880937 0 0 0 AVT{M(Oxidation (M))|F} 4.8085 + + 90 NaN NaN 128842.7 NaN 2619 1843 4463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4465 30.568 NaN 188500 35 0 19599 0.261 + 9270 HPNDDDVHF 9 42 548.228302940141 1094.442052947082 2 548.2283325195312 MULTI HCD FTMS 0 0 0 4463 72254.6171875 0.2487070640662663 -10 0.1658306121826172 2 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 60.07390631473393 0.0174780869009295 1 HPNDDDVH{M(Oxidation (M))|F} 9 0 + 46.309 0 0 4.2313 4.2313 86.974 0 0 0 26.84501246997776 10.642492736872597 10.642492736872597 13.455612550363796 0 1.6989700043360187 0 0 0.4247425010840047 + + HPNDDDVH{M(Oxidation (M))|F};HPGGDDDVH{M(Oxidation (M))|F};HPNDDD{M(Oxidation (M))|F}[HV];HPGGDDD{M(Oxidation (M))|F}[HV] 4.2313;3.0018;2.7517;1.5222 +;-;-;- + 81 + NaN NaN 123883.9 NaN 2620 1843 4463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4466 30.571 NaN 44302 35 0 6224.9 0.261 -1 CAEQFCRL 8 22 513.7273314892501 NaN 0 513.7369995117188 PEAK HCD FTMS 0 0 0 4463 2242.65087890625 1 0 0 3 Carbamidomethyl (C) _CAEQFC(Carbamidomethyl (C))RL_ ENSG00000126545|ENST00000246891|CSN1S1;nc|ENSG00000126545|P47710-2|CSN1S1;nc|ENSG00000126545|P47710-3|CSN1S1 2.302733041254933 0.38822285293237185 1 Q 1 -1 3.9794 0 0 0.38807 0 0 399.23573490304994 495.1251314752563 894.3608663783062 0 0 0 0 0 0 0 0 0 Q 0.38807 + + 1 + NaN NaN 91255.6 NaN 2621 1843 4463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4467 30.575 NaN 43996 35 0 6816.1 0.261 -1 0 22 585.927390090582 1754.7603408719458 3 585.9271240234375 MULTI HCD FTMS 0 0 0 4463 21242.251953125 0.2466642369239548 12 -0.23108863830566406 4 NaN NaN 1 NYGG 4 -1 31.938 0 0 1.8201 0 0 0 1360.5917697922332 1360.5917697922332 31.938200260161125 0 0 0 0 0 0 0 0 NYGG 1.8201 - 8 + NaN NaN 83461.6 NaN 2622 1843 4463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4468 30.578 NaN 29341 35 0 4786 0.261 -1 HPTDVDYRVM 10 19 624.7878383510246 1247.561123768849 2 624.7872314453125 MULTI HCD FTMS 0 0 0 4463 17852.685546875 0.3067162952076077 7 -0.13064193725585938 5 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 6.2057823575117 0.44245551207394906 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 80658.5 NaN 2623 1843 4463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4469 30.581 NaN 26740 35 0 4874.6 0.261 + -1 CNWFSRFY 8 21 590.2548768408797 1178.4952007485592 2 590.254638671875 MULTI HCD FTMS 0 0 0 4463 8047.9150390625 0.5239013066978356 1 -0.02335357666015625 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))NWFSRFY_ REV__ENSG00000118762|ENST00000237596|PKD2;REV__nc|ENSG00000118762|Q13563-3|PKD2;REV__nc|ENSG00000118762|Q13563-4|PKD2;REV__nc|ENSG00000118762|Q13563-5|PKD2;REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79730.9 NaN 2624 1843 4463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4471 30.587 NaN 557580 35 0 140080 0.327 -1 SSGPVDPMM 9 42 476.69129746160695 951.3680419900139 2 476.6910705566406 MULTI HCD FTMS 0 0 0 4470 264826.03125 0.9949168381716725 -2 0.046512603759765625 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 {[QD]|[EN]|[WG]|[KD]|[RS]}[PS]D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 8 -1 + 24.486 0 0 2.5738 2.5738 87.218 0 0 0 1.254471812167779 15.022431204052324 1.254471812167779 24.48638135581298 0 1.305462187404089 0 0.3807196863200844 0 {[QD]|[EN]|[WG]|[KD]|[RS]}[PS]D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.5738 - 33 NaN NaN 171580 NaN 2625 1844 4470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4472 30.591 NaN 74477 35 0 7408.4 0.261 + 5779 FPASHDPDP 9 39 491.7168178322205 981.419082731241 2 491.71673583984375 MULTI HCD FTMS 0 0 0 4470 30911.578125 1 0 0 2 Unmodified _FPASHDPDP_ ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1 10.823927491677226 0.26684000660059787 1 EP 2 8 18.583 0 0 1.8935 0 0 737.3014393537125 0 737.3014393537125 0 1.1484812193980751 0 0 0 0 0 0 0 EP 1.8935 - 25 NaN NaN 103028.2 NaN 2626 1844 4470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4473 30.595 NaN 55121 35 0 5527.3 0.261 -1 0 23 552.7657894076201 1103.5170258820401 2 553.2676391601562 MULTI HCD FTMS 0 0 0 4470 19814.7421875 0.08340989337238684 -44 0.8882884979248047 3 NaN NaN 1 P 1 -1 3.0989 0 0 0.28082 0 0 136.0566509814526 867.3836153619749 1003.4402663434275 0 0 0 0 0 0 0 0 0 P 0.28082 - 4 + NaN NaN 101596.4 NaN 2627 1844 4470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4474 30.598 NaN 19043 35 0 5770.7 0.261 -1 MWLCLGHC 8 16 567.7316596834983 1133.4487664337964 2 567.7312622070312 MULTI HCD FTMS 0 0 0 4470 3800.43994140625 0.6050208962389257 -9 0.15558433532714844 4 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))WLC(Carbamidomethyl (C))LGHC(Carbamidomethyl (C))_ ENST00000461645.1_1_10:103550734-103550779:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89969.7 NaN 2628 1844 4470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4475 30.601 NaN 10941 35 0 3673.1 0.261 + -1 MQRYDKFYK 9 10 647.8179239569671 NaN 0 647.818359375 PEAK HCD FTMS 0 0 0 4470 3943.331787109375 0.688549921284279 -1 0.02335357666015625 5 Oxidation (M) _M(Oxidation (M))QRYDKFYK_ REV__ENSG00000105197|ENST00000607714|TIMM50;REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89180.8 NaN 2629 1844 4470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4477 30.607 NaN 81839 35 0 22048 0.327 + -1 LGGKPMDWVVM 11 36 416.8739350707511 NaN 0 416.8606262207031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _LGGKPMDWVVM(Oxidation (M))_ REV__ENST00000466883.5_1_7:65440836-65441142:-|nuORF 2.843284757254958 0.33405456343542356 1 D 1 -1 6.9897 0 0 0.84038 0 0 133.42914957443583 580.2553194635374 713.6844690379733 0 0 0 0 0 0 0 0 0 D 0.84038 + + 17 + NaN NaN 90610.4 NaN 2630 1845 4476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4478 30.612 NaN 29187 35 0 8679.6 0.261 + 21452 PWPQEFSY 8 11 527.2378824542994 1052.4612119753988 2 527.2377319335938 MULTI HCD FTMS 0 0 0 4476 7206.0341796875 0.8569446509035166 2 -0.027112960815429688 2 Unmodified _PWPQEFSY_ REV__ENSG00000148498|ENST00000374788|PARD3;REV__nc|ENSG00000148498|Q8TEW0-11|PARD3;REV__nc|ENSG00000148498|Q8TEW0-3|PARD3;REV__nc|ENSG00000148498|Q8TEW0-4|PARD3;REV__nc|ENSG00000148498|Q8TEW0-5|PARD3;REV__nc|ENSG00000148498|Q8TEW0-6|PARD3;REV__nc|ENSG00000148498|Q8TEW0-7|PARD3;REV__nc|ENSG00000148498|Q8TEW0|PARD3 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80148.1 NaN 2631 1845 4476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4480 30.617 NaN 1225300 35 0 159310 0.327 + 8481 HADQAEIRSL 10 76 570.2938518458501 1138.5731507585 2 570.2938842773438 MULTI HCD FTMS 0 0 0 4479 917386.875 0.9387500689919286 -2 0.030544281005859375 1 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 213.632949189481 1.905740689935712E-24 1 [HA]DQAE{I|L}RS{I|L} 10 0 + 128.84 0 0 11.316 11.316 90.996 0 0 0 3.4642638806375743 3.4642638806375743 3.4642638806375743 3.4642638806375743 0 3.138210492164445 1.6989700043360187 2.2447026752325154 1.3684151806525389 + + [HA]DQAE{I|L}RS{I|L};HADQAE{I|L}RS{I|L};HAD[AG]AE{I|L}RS{I|L};[HA]D[AG]AE{I|L}RS{I|L};HADQ{I|L}{[CP]|[EA]}RS{I|L};HAD[AG]{I|L}{[CP]|[EA]}RS{I|L};[HA]DQAT{I|L}[RD]{I|L};[HA]D[KT][DP]RS{I|L};[HA]D[AG]AT{I|L}[RD]{I|L};HA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{[CP]|[EA]}RS{I|L} 11.316;11.011;10.206;9.5625;7.8982;7.0933;6.8769;5.7206;5.1898;4.7401 +;+;-;-;-;-;-;-;-;- + 903 NaN NaN 274220.8 NaN 2632 1846 4479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4481 30.621 NaN 60454 35 0 9071.6 0.261 + 27816 TAYRQEPIA 9 34 524.7746218006339 1047.5346906680677 2 524.7744140625 MULTI HCD FTMS 0 0 0 4479 30166.896484375 0.8763177573274933 2 -0.04325294494628906 2 Unmodified _TAYRQEPIA_ ENSG00000143476|ENST00000366991|DTL 3.5964929083625545 0.32375295897743744 1 P{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 8 10.458 0 0 0.9983 0 0 638.4013726522459 0 638.4013726522459 0 10.45757490560675 0 0 0 0 0 0 0 P{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.9983 - 3 + NaN NaN 92416.6 NaN 2633 1846 4479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4482 30.625 NaN 38956 35 0 4111.1 0.262 + -1 NYCTKSCMM 9 24 409.4812693407535 1225.4219786224605 3 409.4818420410156 MULTI HCD FTMS 0 0 0 4479 10062.7568359375 0.445583123001327 7 -0.1336517333984375 3 2 Carbamidomethyl (C),2 Oxidation (M) _NYC(Carbamidomethyl (C))TKSC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000100473|ENST00000396618|COCH;REV__nc|ENSG00000100473|O43405-2|COCH 0.9622753412299311 0.3437222896773173 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3 -1 10.458 0 0 0.85339 0 0 0 877.2635368102136 877.2635368102136 10.45757490560675 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 0.85339 - 7 NaN NaN 88559.1 NaN 2634 1846 4479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4483 30.628 NaN 40526 35 0 7070.8 0.261 -1 DEDESLCR 8 25 512.2069534884935 1022.399354043787 2 512.2066650390625 MULTI HCD FTMS 0 0 0 4479 6387.806640625 0.4834096064178768 2 -0.04325294494628906 4 Carbamidomethyl (C) _DEDESLC(Carbamidomethyl (C))R_ ENSG00000203985|ENST00000371360|LDLRAD1;nc|ENSG00000203985|Q5T700-2|LDLRAD1;nc|ENSG00000203985|Q5T700-4|LDLRAD1 0.6903765706972694 0.5409681170271811 1 C 1 -1 5.4846 0 0 0.53644 0 0 62.003050900759895 854.3676241510374 916.3706750517973 0 0 0 0 0 0 0 0 0 C 0.53644 + + 1 + NaN NaN 87912.9 NaN 2635 1846 4479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4485 30.634 NaN 152500 35 0 13165 0.327 + 9225 HPLSDHEATL 10 44 560.2751367728551 1118.5357206125102 2 560.275146484375 MULTI HCD FTMS 0 0 0 4484 68165.9296875 0.0116289473310467 125 -2.784513473510742 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 29.081581746732265 0.240155558137004 1 T{I|L} 2 8 25.701 0 0 2.2977 0 0 886.3937035873815 0 886.3937035873815 0 2.5134875797167666 0 0 0 0.4247425010840047 0 0.5 0 + T{I|L} 2.2977 + + 22 NaN NaN 115031.9 NaN 2636 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4486 30.638 NaN 150730 35 0 27853 0.261 -1 KYLEERAMRQF 11 33 496.2537710537864 1485.7394837615593 3 496.2535400390625 MULTI HCD FTMS 0 0 0 4484 56933.03515625 0.7838239626505696 4 -0.07357025146484375 2 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 2.2527281973983926 0.4090409658946738 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5586822994776 1191.5586822994776 10.484550065040281 0 0 0 0 0 0 0 0 KY 1.4114 + + 12 + NaN NaN 107858.8 NaN 2637 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4487 30.642 NaN 54261 35 0 8042.9 0.261 + 10446 IPDEKETRL 9 28 550.8009133113729 1099.5872736895458 2 550.800537109375 MULTI HCD FTMS 0 0 0 4484 10662.77734375 0.29835176305610234 19 -0.3843421936035156 3 Unmodified _IPDEKETRL_ ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;nc|ENSG00000135655|Q9Y4E8-4|USP15 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87575.9 NaN 2638 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4488 30.645 NaN 26483 35 0 5674.1 0.261 + 25899 SNKECSFLH 9 19 532.7450649537826 1063.4755769743651 2 532.7457275390625 MULTI HCD FTMS 0 0 0 4484 8976.0185546875 0.6812886504827088 15 -0.2909965515136719 4 Unmodified _SNKECSFLH_ ENSG00000187959|ENST00000344935|CPSF4L 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88208.2 NaN 2639 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4489 30.648 NaN 39510 35 0 6832.8 0.261 + 7406 FVNDDRHVM 9 20 566.7640434982757 1131.5135340633512 2 566.7640991210938 MULTI HCD FTMS 0 0 0 4484 9439.5859375 0.21814529906428584 -7 0.13017654418945312 5 Unmodified _FVNDDRHVM_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 5.731851221503515 0.3075653528928475 1 VM 2 7 18.583 0 0 1.6424 0 0 883.392870017775 0 883.392870017775 0 11.593793813122062 0 0 0 0 0 0 0 + VM 1.6424 + + 7 NaN NaN 78132.8 NaN 2640 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4490 30.652 NaN 32250 35 0 4847.6 0.261 -1 0 19 628.6138771542187 1882.819802062856 3 628.9480590820312 MULTI HCD FTMS 0 0 0 4484 5339.44287109375 0.3288143722153848 -3 0.047119140625 6 NaN NaN 1 G 1 -1 6.9897 0 0 0.37124 0 0 405.16482102305446 1417.6114634385344 1822.7762844615888 0 0 0 0 0 0 0 0 0 G 0.37124 - 2 + NaN NaN 84112.9 NaN 2641 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4491 30.655 NaN 13981 35 0 3567.7 0.261 + 21991 QEVLPFIYR 9 15 582.8238319077782 NaN 0 582.8231811523438 PEAK HCD FTMS 0 0 0 4484 1923.694580078125 0.4845294621743158 -2 0.027112960815429688 7 Unmodified _QEVLPFIYR_ ENSG00000082213|ENST00000325366|C5orf22;ENST00000511208.2_1_5:31532460-31535865:+|nuORF;ENST00000515409.5_1_5:31532460-31534525:+|nuORF 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88449.9 NaN 2642 1847 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4493 30.66 NaN 255360 35 0 27961 0.327 + 18458 MPVRAADKL 9 44 500.78410941715276 999.5536659011055 2 500.78399658203125 MULTI HCD FTMS 0 0 0 4492 198193.734375 0.7449926895046377 2 -0.03349113464355469 1 Unmodified _MPVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 51.629811660486645 0.02929079705179888 1 {NN|[MP]|[D{I|L}]|[EV]}V[KG]PMK{I|L} 9 4 + 38.91 0 0 3.8927 3.8927 85.491 0 0 0 4.415084278978377 4.524845855158837 4.415084278978377 9.501962355242956 0 1.2302046884880937 0 0.6307196863200843 0 {NN|[MP]|[D{I|L}]|[EV]}V[KG]PMK{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[KG]KPM{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[KG]PKM{I|L};[VP]{[RE]|[WV]}QMK{I|L};[QP][KQ]QMK{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[KG]KP{I|L}M;[VP]{[CA]|SS}[RV]DK{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[KG]PK{I|L}M;[VP]{[RE]|[WV]}[AG]MK{I|L};[QP][KQ]QKM{I|L} 3.8927;2.9421;2.7659;2.5933;2.3604;2.2384;2.144;2.0622;1.6667;1.559 -;-;-;-;-;-;-;-;-;- 180 NaN NaN 117732.2 NaN 2643 1848 4492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4494 30.665 NaN 23236 35 0 3756.3 0.261 + 25794 SLLTVHQRIH 10 17 602.3509862167783 1202.6874195003566 2 602.3508911132812 MULTI HCD FTMS 0 0 0 4492 13633.1884765625 0.532858728084499 3 -0.04689216613769531 2 Unmodified _SLLTVHQRIH_ ENSG00000197608|ENST00000594440|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant 4.897010918128616 0.4493830473644964 1 {[TV]|[{I|L}S]}{I|L}TVD 6 5 26.031 0 0 2.1644 0 0 0 571.3212374322874 571.3212374322874 26.030768805449185 0 0 0 0 0 0 0 0 {[TV]|[{I|L}S]}{I|L}TVD 2.1644 - 10 + NaN NaN 98031.2 NaN 2644 1848 4492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4495 30.668 NaN 16048 35 0 3393.2 0.261 + -1 IVMCLPMMH 9 14 590.2548768408797 1178.4952007485592 2 590.2562255859375 MULTI HCD FTMS 0 0 0 4492 8333.6923828125 0.5425047739422789 6 -0.10718154907226562 3 Carbamidomethyl (C),3 Oxidation (M) _IVM(Oxidation (M))C(Carbamidomethyl (C))LPM(Oxidation (M))M(Oxidation (M))H_ REV__ENSG00000107331|ENST00000341511|ABCA2;REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF;REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2;REV__nc|ENSG00000107331|Q9BZC7-4|ABCA2;REV__nc|ENSG00000107331|Q9BZC7|ABCA2 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84328.6 NaN 2645 1848 4492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4497 30.674 NaN 298800 35 0 23061 0.327 + 22247 QPADAERAL 9 50 485.75134944570897 969.488145958218 2 485.7511901855469 MULTI HCD FTMS 0 0 0 4496 195341.203125 0.23817029562001746 7 -0.13392257690429688 1 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 51.629811660486645 0.02929079705179888 1 [QP]ADAERA{I|L} 9 0 + 53.166 0 0 5.4839 5.4839 91.987 0 0 0 20.430599746173215 9.137342758552691 9.137342758552691 53.16569691289537 0 0.5994850021680094 0 0.805462187404089 0.3252574989159953 + + [QP]ADAERA{I|L} 5.4839 + + 113 + NaN NaN 131192.8 NaN 2646 1849 4496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4498 30.678 NaN 219100 35 0 24509 0.261 + 21862 QAVRDTATL 9 45 487.76698589695627 973.5194188607126 2 487.766845703125 MULTI HCD FTMS 0 0 0 4496 109866.9375 0.7752220327389969 -3 0.056667327880859375 2 Unmodified _QAVRDTATL_ ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 T{I|L} 2 7 21.454 0 0 2.2037 0 0 741.3774349047118 0 741.3774349047118 0 11.989700043360187 0 0 0 0.5 0 0 0 + T{I|L} 2.2037 + + 32 NaN NaN 128273.1 NaN 2647 1849 4496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4499 30.682 NaN 76868 35 0 6397.5 0.261 + 28739 TTADPAIAASD 11 40 516.7467885197464 NaN 0 516.7608642578125 PEAK HCD FTMS 0 0 0 4496 6968.35888671875 0.8976651470751407 2 -0.033477783203125 3 Unmodified _TTADPAIAASD_ ENSG00000131016|ENST00000402676|AKAP12 2.735195868890462 0.3343611804837492 1 AE{I|L}EV 5 9 17.167 0 0 1.6643 0 0 188.03415213539262 299.1468905084594 487.18104264385204 0 0 0 0 0 0 0 0 0 AE{I|L}EV 1.6643 - 30 + NaN NaN 88996.4 NaN 2648 1849 4496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4500 30.685 NaN 20842 35 0 4076.5 0.261 -1 HKCPDCDMAF 10 17 640.7463949172791 1279.478236901358 2 640.7465209960938 MULTI HCD FTMS 0 0 0 4496 4836.38330078125 0.22419208430438822 -3 0.056667327880859375 4 2 Carbamidomethyl (C) _HKC(Carbamidomethyl (C))PDC(Carbamidomethyl (C))DMAF_ CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF 0.4007161486938917 0.47318265037741464 1 CP 2 -1 10.969 0 0 0.85731 0 0 597.2404572156144 479.16343103580317 1076.4038882514176 0 0 0 0 0 0 0 0 0 CP 0.85731 + + 3 + NaN NaN 83679.8 NaN 2649 1849 4496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4501 30.688 NaN 37181 35 0 8495.1 0.263 + -1 MFYSVFCI 8 23 513.2267955594655 NaN 0 513.2408447265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))FYSVFCI_ REV__ENSG00000004846|ENST00000404938|ABCB5;REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86421.4 NaN 2650 1849 4496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4503 30.694 NaN 143160 35 0 42868 0.327 -1 NADPQAVTM 9 25 481.7160340118904 961.4175150905808 2 481.7159118652344 MULTI HCD FTMS 0 0 0 4502 67121.84375 0.018269334015057634 53 -1.1148700714111328 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 1 AVT{M(Oxidation (M))|F} 4 -1 45.745 0 0 4.7581 0 0 525.2169666974625 0 525.2169666974625 0 40.26084705832169 0 0 0 1.3807196863200843 0 0 0 AVT{M(Oxidation (M))|F} 4.7581 + + 29 NaN NaN 101263.3 NaN 2651 1850 4502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4504 30.698 NaN 56564 35 0 8118.6 0.261 -1 RYLEVMRKL 9 31 408.568989791289 1222.6851399740672 3 408.5694885253906 MULTI HCD FTMS 0 0 0 4502 15831.2236328125 0.5335765884719196 -7 0.13064193725585938 2 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257|PTPA 4.189502756095605 0.319257502753388 1 E 1 -1 11.99 0 0 0.9806 0 0 661.3949982905364 429.22602258853755 1090.621020879074 0 0 0 0 0 0.5 0 0 0 E 0.9806 + + 1 + NaN NaN 93814.3 NaN 2652 1850 4502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4505 30.702 NaN 48379 35 0 9622.6 0.261 + 27817 TAYRQEPIA 9 26 524.7746218006339 1047.5346906680677 2 524.7759399414062 MULTI HCD FTMS 0 0 0 4502 11698.4169921875 0.3398271528589422 6 -0.1138458251953125 3 Unmodified _TAYRQEPIA_ ENSG00000143476|ENST00000366991|DTL 5.731851221503515 0.3075653528928475 1 P{I|L}A 3 6 30.445 0 0 2.9064 0 0 748.348663167986 0 748.348663167986 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 + P{I|L}A 2.9064 + + 4 NaN NaN 99187.9 NaN 2653 1850 4502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4507 30.707 NaN 593840 35 0 53585 0.327 -1 EVDHGDFEM 9 60 547.7084327321719 1093.4023125311437 2 548.2281494140625 MULTI HCD FTMS 0 0 0 4506 10534.5771484375 0.9039548775353692 -2 0.033477783203125 1 Oxidation (M) _EVDHGDFEM(Oxidation (M))_ ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4 21.74664581756881 0.17247014374749275 1 HVDH{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7 -1 43.586 0 0 3.9863 0 0 164.0407357020644 0 164.0407357020644 0 14.212571493103198 0 0 0 0.2742275032520141 0 2.0189301784845295 0 HVDH{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3.9863 - 567 + NaN NaN 172246.6 NaN 2654 1851 4506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4508 30.712 NaN 79212 35 0 13000 0.261 + 22847 QYLVEVRGQ 9 34 546.2962687155114 1090.5779844978226 2 546.3085327148438 MULTI HCD FTMS 0 0 0 4506 16155.76953125 0.7929915181321197 1 -0.013416290283203125 2 Unmodified _QYLVEVRGQ_ REV__ENSG00000187908|ENST00000338354|DMBT1;REV__nc|ENSG00000187908|Q9UGM3-2|DMBT1;REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1;REV__nc|ENSG00000187908|Q9UGM3-5|DMBT1;REV__nc|ENSG00000187908|Q9UGM3-7|DMBT1;REV__nc|ENSG00000187908|Q9UGM3-8|DMBT1;REV__nc|ENSG00000187908|Q9UGM3|DMBT1 5.731851221503515 0.3075653528928475 1 QY{I|L}SK 5 -1 35.433 0 0 3.249 0 0 0 468.2114657037719 468.2114657037719 22.75698788007091 0 0 0 0 0 0 0 0.3494850021680094 QY{I|L}SK 3.249 - 38 + NaN NaN 95958.5 NaN 2655 1851 4506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4509 30.715 NaN 186900 35 0 24909 0.261 + 22528 QSDPRAEEL 9 51 522.7511471400297 1043.4877413468594 2 522.7511596679688 MULTI HCD FTMS 0 0 0 4506 53535.0859375 0.6168335052337975 -3 0.04689216613769531 3 Unmodified _QSDPRAEEL_ ENSG00000166135|ENST00000299163|HIF1AN 13.042465956692817 0.2476723265019929 1 {M(Oxidation (M))|F} 1 9 13.495 0 0 1.2932 0 0 878.440223501936 0 878.440223501936 0 3.305300040193016 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2932 - 25 + NaN NaN 111752.7 NaN 2656 1851 4506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4511 30.721 NaN 250980 35 0 62323 0.327 -1 SSGPVDPMM 9 36 476.6911522156508 951.3677514981016 2 476.691162109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 23.232 0 0 2.4419 0 0 427.2062871299185 0 427.2062871299185 0 20.132965752203233 0 0 0 0.9247425010840047 0 0.3807196863200844 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.4419 + + 8 NaN NaN 118318 NaN 2657 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4512 30.725 NaN 59918 35 0 10003 0.464 + 22429 QQAFYNDP 8 29 491.7168178322205 981.419082731241 2 491.7166748046875 MULTI HCD FTMS 0 0 0 4510 22738.427734375 0.7355958224593232 8 -0.1637744903564453 2 Unmodified _QQAFYNDP_ ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 1.844237919475145 0.5392561982033289 1 {M(Oxidation (M))|F} 1 7 4.6041 0 0 0.46913 0 0 627.0093364927629 204.35381494693596 831.3631514396989 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.46913 + + 2 + NaN NaN 102481.3 NaN 2658 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4513 30.732 NaN 78310 35 0 6153.4 0.261 + 25398 SELISTVRQ 9 39 516.7866306396834 NaN 0 516.7697143554688 PEAK HCD FTMS 0 0 0 4510 2356.78662109375 1 0 0 3 Unmodified _SELISTVRQ_ ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-3|DNM1 4.3292370932331545 0.2742679634796037 1 AE{I|L}EV 5 6 21.938 0 0 2.1267 0 0 188.11384306629856 299.14692102603755 487.2607640923361 0 0 0 0 0 0 0 0 0 AE{I|L}EV 2.1267 - 26 + NaN NaN 98374.3 NaN 2659 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4514 30.735 NaN 54039 35 0 11081 0.261 + 28375 TPEDREVRL 9 25 557.7962380424806 1113.577923151761 2 557.7962646484375 MULTI HCD FTMS 0 0 0 4510 13729.634765625 0.5915797518984299 -2 0.02681732177734375 4 Unmodified _TPEDREVRL_ ENSG00000183527|ENST00000331573|PSMG1;nc|ENSG00000183527|O95456-2|PSMG1 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90718.3 NaN 2660 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4515 30.739 NaN 17706 35 0 4168.5 0.261 + -1 YCRSCTLW 8 12 544.7358451193417 1087.4571373054832 2 544.73583984375 MULTI HCD FTMS 0 0 0 4510 9611.669921875 0.5483968959677602 -1 0.013416290283203125 5 Carbamidomethyl (C) _YC(Carbamidomethyl (C))RSCTLW_ REV__ENSG00000162929|ENST00000402291|SANBR;REV__nc|ENSG00000162929|Q6NSI8-2|SANBR;REV__nc|ENSG00000162929|Q6NSI8-3|SANBR 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84090.7 NaN 2661 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4516 30.742 NaN 19566 35 0 5536.3 0.261 -1 HPTDVDYRVM 10 16 624.7878383510246 1247.561123768849 2 624.7880249023438 MULTI HCD FTMS 0 0 0 4510 8452.818359375 0.14522280832444112 16 -0.3473682403564453 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87186.6 NaN 2662 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4517 30.745 NaN 51399 35 0 9137 0.262 -1 SIRSGYEVM 9 28 529.2528104183741 1056.4910679035481 2 529.2526245117188 MULTI HCD FTMS 0 0 0 4510 12795.859375 0.3308986044587176 -9 0.15745925903320312 7 Oxidation (M) _SIRSGYEVM(Oxidation (M))_ ENSG00000135404|ENST00000257857|CD63;nc|ENSG00000135404|P08962-2|CD63;nc|ENSG00000135404|P08962-3|CD63 9.38312468134398 0.279288223203164 1 EV{M(Oxidation (M))|F} 3 -1 35.005 0 0 3.3133 0 0 663.331346580275 0 663.331346580275 0 35.00508444608478 0 0 0 0.8807196863200843 0 0 0 EV{M(Oxidation (M))|F} 3.3133 + + 8 NaN NaN 80625.1 NaN 2663 1852 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4519 30.751 NaN 130620 35 0 26225 0.327 + 9378 HPTDVDYRV 9 33 551.2698845001086 1100.525216067017 2 551.2697143554688 MULTI HCD FTMS 0 0 0 4518 33014.03515625 0.10535818021255154 -8 0.14418983459472656 1 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 19.256988751693697 0.19398022840297344 1 HP 2 7 24.464 0 0 2.2229 0 0 0 863.3916006734956 863.3916006734956 24.463950151760656 0 0 0 0 0.5 0 0 0 + HP 2.2229 + + 2 + NaN NaN 96917.3 NaN 2664 1853 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4520 30.755 NaN 16915 35 0 2268.4 0.261 -1 EVSCEEQEC 9 18 585.2081483075394 1168.4017436818788 2 585.20751953125 MULTI HCD FTMS 0 0 0 4518 2230.739013671875 0.11472124958692297 21 -0.41742897033691406 2 2 Carbamidomethyl (C) _EVSC(Carbamidomethyl (C))EEQEC(Carbamidomethyl (C))_ ENSG00000135253|ENST00000610776|KCP;nc|ENSG00000135253|Q6ZWJ8-4|KCP;nc|ENSG00000135253|Q6ZWJ8|KCP 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78490 NaN 2665 1853 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4521 30.759 NaN 81605 35 0 21051 0.264 + -1 PKRCAAEPYD 10 36 416.8605855529177 1247.5599272589532 3 416.8612365722656 MULTI HCD FTMS 0 0 0 4518 7654.72314453125 0.13006954234332638 18 -0.3773307800292969 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))PKRC(Carbamidomethyl (C))AAEPYD_ REV__ENST00000305321.4_1_16:30205262-30205319:-|nuORF 0.6976657623105312 0.47161084886498755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99934.5 NaN 2666 1853 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4522 30.762 NaN 32802 35 0 6364.3 0.261 + 475 ALRRTHCVP 9 25 526.7922222013061 NaN 0 526.7267456054688 PEAK HCD FTMS 0 0 0 4518 1945.6468505859375 0.5208485981169148 -1 0.03009033203125 4 Unmodified _ALRRTHCVP_ ENST00000515578.5_1_4:420284-429666:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89300.9 NaN 2667 1853 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4524 30.768 NaN 626550 35 0 83905 0.327 + 8482 HADQAEIRSL 10 56 570.2938518458501 1138.5731507585 2 570.2937622070312 MULTI HCD FTMS 0 0 0 4523 427967.875 0.4379339656266383 6 -0.11690139770507812 1 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 135.87430741348314 7.973170242136919E-06 1 [HA]DQAE{I|L}RS{I|L} 10 0 + 116.44 0 0 10.227 10.227 97.088 0 0 0 12.645680359949552 93.9982203091637 12.645680359949552 20.714011381220246 0 2.8494850021680094 1.6989700043360187 1.2059771852360797 1.1549471895720984 + + [HA]DQAE{I|L}RS{I|L};[HA]D[AG]AE{I|L}RS{I|L};[HA]D[KT][DP]RS{I|L} 10.227;8.4074;4.6421 +;-;- + 203 NaN NaN 184328.3 NaN 2668 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4525 30.772 NaN 114690 35 0 10578 0.261 + 25239 SASGWCFFTL 10 35 559.7525894527917 1117.4906259723832 2 560.2749633789062 MULTI HCD FTMS 0 0 0 4523 4749.7353515625 0.16371853653594148 57 -1.2212562561035156 2 Unmodified _SASGWCFFTL_ ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF 3.5964929083625545 0.45626689593999237 1 TAE 3 9 22.976 0 0 2.056 0 0 130.04844364630873 683.2912691705686 813.3397128168774 0 0 0 0 0 0 0 1.305462187404089 0 TAE 2.056 - 30 + NaN NaN 97400.6 NaN 2669 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4526 30.776 NaN 118990 35 0 25631 0.263 + 30172 VHAQDTPL 8 36 440.72992652885154 879.4453001245031 2 440.72967529296875 MULTI HCD FTMS 0 0 0 4523 30599.083984375 0.7811714551947821 2 -0.04015541076660156 3 Unmodified _VHAQDTPL_ REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF 16.942295170755138 0.46913822049235215 1 Q 1 -1 4.6041 0 0 0.52352 0 0 350.11108489188433 398.2523287408813 748.3634136327656 0 0 0 0 0 0 0 0 0 Q 0.52352 + + 9 + NaN NaN 100042.1 NaN 2670 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4527 30.779 NaN 139680 35 0 18903 0.261 + 19591 NTIDQKIVER 10 39 405.8944216716755 1214.6614356152265 3 405.8944091796875 MULTI HCD FTMS 0 0 0 4523 42386.15625 0.5768875094301705 -3 0.06028938293457031 4 Unmodified _NTIDQKIVER_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 27.128809495255545 0.25735828607737204 1 {[QS]|[NT]}{I|L}D 4 6 42.435 0 0 3.4936 0 0 0 768.4374554719816 768.4374554719816 41.721675119240516 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + {[QS]|[NT]}{I|L}D 3.4936 + + 15 + NaN NaN 106406.7 NaN 2671 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4528 30.782 NaN 41457 35 0 4000 0.261 -1 0 27 552.7657894076201 1103.5170258820401 2 553.2675170898438 MULTI HCD FTMS 0 0 0 4523 14913.58984375 0.0627785578482788 -34 0.6349048614501953 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85073.9 NaN 2672 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4529 30.786 NaN 136330 35 0 28614 0.264 + 25558 SFQVSRKMPE 10 40 403.5414132705562 1207.6024104118685 3 403.5410461425781 MULTI HCD FTMS 0 0 0 4523 8143.98681640625 0.2185241896770028 -7 0.13385963439941406 6 Unmodified _SFQVSRKMPE_ ENST00000531699.5_1_17:42786295-42807277:+|nuORF 3.2813086475875832 0.45793521633868084 1 PD 2 9 10.969 0 0 0.90834 0 0 164.0668226323299 828.432525365875 992.4993479982049 0 0 0 0 0 0 0 0 0 PD 0.90834 - 8 + NaN NaN 103289.1 NaN 2673 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4530 30.789 NaN 12029 35 0 4529 0.261 + 12417 KPGVFYQQVL 10 11 589.8299772510817 NaN 0 589.8301391601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KPGVFYQQVL_ ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant;ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93136.9 NaN 2674 1854 4523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4532 30.794 NaN 57278 35 0 9740.4 0.327 + 7407 FVNDDRHVM 9 23 566.7640434982757 1131.5135340633512 2 566.7638549804688 MULTI HCD FTMS 0 0 0 4531 37733.1015625 0.8719978587487311 1 -0.013399124145507812 1 Unmodified _FVNDDRHVM_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 8.745405648335112 0.2847203663274469 1 VM 2 7 20.969 0 0 1.8532 0 0 883.3934329184359 0 883.3934329184359 0 20.969100130080562 0 0 0 0 0 0 0 + VM 1.8532 + + 1 NaN NaN 88522.1 NaN 2675 1855 4531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4533 30.799 NaN 32106 35 0 7064.9 0.261 + 23246 RGKLHYRR 8 29 543.3250363266617 1084.6355197201233 2 543.3240966796875 MULTI HCD FTMS 0 0 0 4531 9483.7958984375 0.6007617619503185 -2 0.04353904724121094 2 Unmodified _RGKLHYRR_ ENST00000534268.5_1_15:79237012-79237186:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77541 NaN 2676 1855 4531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4534 30.802 NaN 27853 35 0 4638.3 0.261 -1 0 23 628.6138771542187 1882.819802062856 3 628.9469604492188 MULTI HCD FTMS 0 0 0 4531 6201.95703125 0.3819298486696842 5 -0.09014511108398438 3 NaN NaN 1 G 1 -1 6.9897 0 0 0.37124 0 0 1143.9895541153935 678.7833346002561 1822.7728887156495 0 0 0 0 0 0 0 0 0 G 0.37124 - 1 + NaN NaN 103222.7 NaN 2677 1855 4531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4536 30.808 NaN 124200 35 0 12231 0.327 + 21797 QAKREETI 8 45 487.76698589695627 973.5194188607126 2 487.7668151855469 MULTI HCD FTMS 0 0 0 4535 57458.625 0.4054285400545341 4 -0.07674598693847656 1 Unmodified _QAKREETI_ ENST00000264434.6_1_2:70410049-70418182:-|nuORF 26.88365393820708 0.39599352634412927 1 T{I|L} 2 6 24.706 0 0 2.5378 0 0 741.3786488263687 0 741.3786488263687 0 11.211375162600703 0 0 0 0.5 0 0.3252574989159953 0 + T{I|L} 2.5378 + + 38 NaN NaN 97196.7 NaN 2678 1856 4535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4537 30.812 NaN 51089 35 0 6662.5 0.261 + 10725 IQMRPDLK 8 23 500.78410941715276 999.5536659011055 2 500.783935546875 MULTI HCD FTMS 0 0 0 4535 42875.5078125 0.16116523551988035 10 -0.2103271484375 2 Unmodified _IQMRPDLK_ ENSG00000120251|ENST00000264426|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000120251|P42262-4|GRIA2 6.723162845929126 0.5320176132289695 1 D 1 7 11.99 0 0 1.1995 0 0 259.1888967738835 622.3140963190061 881.5029930928897 0 0 0 0 0 0.5 0 0 0 + D 1.1995 + + 5 + NaN NaN 103168.7 NaN 2679 1856 4535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4538 30.816 NaN 21895 35 0 4596.7 0.261 + -1 FYERCVSCC 9 12 640.7463949172791 1279.478236901358 2 640.746337890625 MULTI HCD FTMS 0 0 0 4535 13790.2177734375 0.6392499256911582 4 -0.07674598693847656 3 3 Carbamidomethyl (C) _FYERC(Carbamidomethyl (C))VSC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000164603|ENST00000297145|BMT2 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86164 NaN 2680 1856 4535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4540 30.821 NaN 154450 35 0 43889 0.327 + 18797 NADPQAVTM 9 36 481.7160340118904 961.4175150905808 2 481.7158508300781 MULTI HCD FTMS 0 0 0 4539 60513.03125 0.01647053654079445 60 -1.330902099609375 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 47.594388314883695 0.03493607795751234 1 {[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AVT{M(Oxidation (M))|F} 8 4 + 52.44 0 0 5.4545 5.4545 91.899 0 0 0 52.44009708316895 2.007046801327732 2.007046801327732 52.44009708316895 0 1.5 0 0.4247425010840047 0.3807196863200844 {[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AVT{M(Oxidation (M))|F} 5.4545 - 42 + NaN NaN 106165 NaN 2681 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4541 30.826 NaN 77505 35 0 7960.3 0.261 -1 RYLEVMRKL 9 36 408.568989791289 1222.6851399740672 3 408.569091796875 MULTI HCD FTMS 0 0 0 4539 29670.01171875 1 0 0 2 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257|PTPA 3.5870582119611467 0.32382448100160255 1 E 1 -1 7.7423 0 0 0.63322 0 0 661.3926727883235 429.2266024225219 1090.6192752108454 0 0 0 0 0 0.4247425010840047 0 0 0 E 0.63322 + + 4 + NaN NaN 98315.7 NaN 2682 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4542 30.829 NaN 115340 35 0 17036 0.261 -1 KYLEERAMRQF 11 37 496.2537710537864 1485.7394837615593 3 496.25390625 MULTI HCD FTMS 0 0 0 4539 22374.96875 0.3080467539043959 14 -0.3069629669189453 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.560525482609 1191.560525482609 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.4114 + + 2 + NaN NaN 102027.7 NaN 2683 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4543 30.832 NaN 43408 35 0 8794.8 0.261 + -1 GVVGSCTMSE 10 17 513.7151402458435 1025.4157275584869 2 513.71533203125 MULTI HCD FTMS 0 0 0 4539 8350.1982421875 0.10263298784824698 -15 0.28107643127441406 4 Carbamidomethyl (C) _GVVGSC(Carbamidomethyl (C))TMSE_ REV__ENST00000529086.5_1_11:31436457-31436541:+|nuORF 3.5964929083625545 0.45626689593999237 1 S 1 -1 11.99 0 0 1.1693 0 0 626.2041624723526 309.15732752017817 935.3614899925308 0 0 0 0 0 0.5 0 0 0 S 1.1693 + + 3 + NaN NaN 90903.2 NaN 2684 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4544 30.836 NaN 37921 35 0 11897 0.261 -1 MMRAVLLL 8 18 510.7828861324786 1019.5512193317572 2 510.7835693359375 MULTI HCD FTMS 0 0 0 4539 7054.203125 0.5763484319756832 -4 0.07036781311035156 5 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))M(Oxidation (M))RAVLLL_ CON__Q2KIH2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85313.3 NaN 2685 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4545 30.839 NaN 20334 35 0 3939.6 0.261 + 22455 QQQKIRYDE 9 17 604.3067104900593 1206.5988680469186 2 604.30712890625 MULTI HCD FTMS 0 0 0 4539 5743.08984375 0.6405118933519213 -3 0.053585052490234375 6 Unmodified _QQQKIRYDE_ REV__ENSG00000055609|ENST00000262189|KMT2C;REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;REV__KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C;REV__nc|ENSG00000055609|Q8NEZ4-3|KMT2C 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81591.1 NaN 2686 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4546 30.842 NaN 13242 35 0 3162.8 0.261 + -1 SEMACAQDEE 10 13 585.2081483075394 1168.4017436818788 2 584.788818359375 MULTI HCD FTMS 0 0 0 4539 2061.956298828125 0.10604118265086478 25 -0.5210418701171875 7 Carbamidomethyl (C) _SEMAC(Carbamidomethyl (C))AQDEE_ REV__ENSG00000107331|ENST00000341511|ABCA2;REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF;REV__ENST00000487109.5_1_9:139906084-139911410:-|nuORF;REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2;REV__nc|ENSG00000107331|Q9BZC7-4|ABCA2;REV__nc|ENSG00000107331|Q9BZC7|ABCA2 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101074.4 NaN 2687 1857 4539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4548 30.848 NaN 448060 35 0 49126 0.327 + 9271 HPNDDDVHF 9 56 548.228302940141 1094.442052947082 2 548.228271484375 MULTI HCD FTMS 0 0 0 4547 235370.875 0.810168284969964 5 -0.0870361328125 1 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 79.59630418116434 0.005983006570063981 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDDVH{M(Oxidation (M))|F} 9 0 + 62.202 0 0 5.6834 5.6834 92.597 0 0 0 5.298086289833535 40.82650597641134 5.298086289833535 62.20168122889959 0 2.473197507588033 0 2.0356668758921828 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDDVH{M(Oxidation (M))|F} 5.6834 + + 282 NaN NaN 154542.1 NaN 2688 1858 4547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4549 30.852 NaN 44134 35 0 11320 0.261 -1 DWWRLCMV 8 26 562.7554294739296 NaN 0 562.7548217773438 PEAK HCD FTMS 0 0 0 4547 6799.40185546875 0.8261867838593194 -2 0.04010963439941406 2 Oxidation (M) _DWWRLCM(Oxidation (M))V_ ENST00000262644.8_1_8:57876224-57876296:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88753 NaN 2689 1858 4547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4551 30.858 NaN 481430 35 0 133190 0.327 -1 SSGPVDPMM 9 30 476.6911522156508 951.3677514981016 2 476.6910705566406 MULTI HCD FTMS 0 0 0 4550 213161.609375 0.8531136771970799 -2 0.03684425354003906 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 26.88365393820708 0.12808753336095696 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 27.435 0 0 2.8837 0 0 427.20633266679243 0 427.20633266679243 0 24.336068845642203 0 0 0 1.4247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.8837 + + 8 NaN NaN 151124.1 NaN 2690 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4552 30.862 NaN 106960 35 0 14597 0.261 + 16 AAGVGDMVM 9 37 441.68865586833243 881.3627588034649 2 441.68865966796875 MULTI HCD FTMS 0 0 0 4550 64041.19921875 0.4587630957467135 -7 0.13730239868164062 2 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 74.42276476219924 0.007657080072768255 1 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 70.455 0 0 7.9939 7.9939 86.629 0 0 0 0.28273777167044045 0.28273777167044045 0.28273777167044045 0.28273777167044045 0 2.7614393726401687 0 0.4247425010840047 0 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.9939;7.9618 -;+ + 99 NaN NaN 91179.4 NaN 2691 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4553 30.866 NaN 121790 35 0 17837 0.261 + 26242 SQDKTDHTL 9 34 522.7511471400297 1043.4877413468594 2 522.7510986328125 MULTI HCD FTMS 0 0 0 4550 46529.55078125 0.5361154353774575 5 -0.11328697204589844 3 Unmodified _SQDKTDHTL_ REV__ENSG00000100292|ENST00000216117|HMOX1;REV__ENST00000494998.1_1_22:35783088-35786015:+|nuORF 6.723162845929126 0.3000504726104499 1 E 1 -1 6.9897 0 0 0.66984 0 0 148.1192561957634 763.2998140924436 911.419070288207 0 0 0 0 0 0 0 0 0 E 0.66984 - 5 + NaN NaN 98056.2 NaN 2692 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4554 30.869 NaN 62501 35 0 6059.1 0.261 + 25780 SLHVGGSNLS 10 39 485.75134944570897 969.488145958218 2 485.75115966796875 MULTI HCD FTMS 0 0 0 4550 34015.86328125 0.04147393424356646 17 -0.3474903106689453 4 Unmodified _SLHVGGSNLS_ ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1 3.2813086475875832 0.45793521633868084 1 [QP]W 3 10 10.458 0 0 1.0787 0 0 0 555.2903536432249 555.2903536432249 3.4678748622465623 0 0 0 0 0 0 0 0 [QP]W 1.0787 - 7 + NaN NaN 100190.7 NaN 2693 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4555 30.872 NaN 49296 35 0 5970.7 0.261 + 22430 QQAFYNDP 8 27 491.7168178322205 981.419082731241 2 491.7162780761719 MULTI HCD FTMS 0 0 0 4550 19846.6328125 0.6420452793527506 15 -0.31021690368652344 5 Unmodified _QQAFYNDP_ ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86678.2 NaN 2694 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4556 30.876 NaN 31670 35 0 6778.4 0.261 -1 MRLCVFIK 8 23 526.2930722212521 1050.5715915093042 2 526.2926025390625 MULTI HCD FTMS 0 0 0 4550 2082.269287109375 0.24765431850697778 -3 0.050273895263671875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MRLCVFIK_ ENST00000308595.9_1_11:67053991-67054024:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80310.3 NaN 2695 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4557 30.879 NaN 10423 35 0 4327.4 0.261 -1 0 8 628.6138771542187 1882.819802062856 3 628.9495849609375 MULTI HCD FTMS 0 0 0 4550 1708.674072265625 0.1052238231509794 8 -0.17678451538085938 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88843.3 NaN 2696 1859 4550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4559 30.885 NaN 86109 35 0 8663.6 0.327 + 31582 VYIEKNDKL 9 37 561.3140980666755 1120.6136432001508 2 561.3139038085938 MULTI HCD FTMS 0 0 0 4558 18680.033203125 0.9785945109476444 -1 0.026472091674804688 1 Unmodified _VYIEKNDKL_ ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3 13.90604991867851 0.24021115267848145 1 [YV]{I|L} 3 6 33.2 0 0 2.9626 0 0 0 742.3790377252561 742.3790377252561 26.2101498947667 0 0 0 0 0.4247425010840047 2 0 0 + [YV]{I|L} 2.9626 + + 39 + NaN NaN 99940 NaN 2697 1860 4558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4560 30.889 NaN 39312 35 0 12596 0.261 + 21096 PNHRGRRQ 8 22 510.7828861324786 1019.5512193317572 2 510.7818298339844 MULTI HCD FTMS 0 0 0 4558 7625.33837890625 0.6230118044646773 -1 0.026472091674804688 2 Unmodified _PNHRGRRQ_ ENST00000519262.5_1_8:58907100-58944214:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114688.3 NaN 2698 1860 4558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4561 30.893 NaN 50220 35 0 8108.8 0.261 + 14417 LELNRNHR 8 27 526.2930722212521 1050.5715915093042 2 526.8076171875 MULTI HCD FTMS 0 0 0 4558 1825.127197265625 0.3920462715773781 1 -0.013460159301757812 3 Unmodified _LELNRNHR_ ENSG00000215475|ENST00000400405|SIAH3 2.302733041254933 0.5385759549224092 1 A[WQ] 3 8 10.458 0 0 0.99542 0 0 647.375291892775 0 647.375291892775 0 10.45757490560675 0 0 0 0 0 0 0 A[WQ] 0.99542 - 2 NaN NaN 90386.1 NaN 2699 1860 4558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4563 30.898 NaN 670590 35 0 152750 0.327 + 9379 HPTDVDYRV 9 52 551.2698845001086 1100.525216067017 2 551.2698364257812 MULTI HCD FTMS 0 0 0 4562 313350.46875 1 0 0 1 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 49.55428908609986 0.03219431099695407 1 HPTD[DV]V[YR] 9 2 + 55.41 0 0 5.0349 5.0349 91.353 0 0 0 49.92538423561818 7.147642715192504 7.147642715192504 55.40993430065846 0 1.25 0 0.8807196863200843 0 HPTD[DV]V[YR] 5.0349 - 72 + NaN NaN 186724.8 NaN 2700 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4564 30.902 NaN 226380 35 0 29235 0.261 + 8483 HADQAEIRSL 10 45 570.2938518458501 1138.5731507585 2 570.2937622070312 MULTI HCD FTMS 0 0 0 4562 149540.171875 0.15302251480840198 13 -0.27028465270996094 2 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 76.41605946988834 0.009982875570622314 1 HADQAE{I|L} 7 3 98.096 0 0 8.6157 0 0 0 371.20481287174067 371.20481287174067 83.83162630705762 0 0 0 0 2.7302046884880937 1.5228787452803376 0.3494850021680094 0.7614393726401688 + HADQAE{I|L} 8.6157 + + 96 + NaN NaN 119742 NaN 2701 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4565 30.906 NaN 123060 35 0 10449 0.261 + 11717 KCDCLGTELH 10 47 559.7525894527917 1117.4906259723832 2 560.27490234375 MULTI HCD FTMS 0 0 0 4562 9718.5341796875 0.33498796783478585 64 -1.4773502349853516 3 Unmodified _KCDCLGTELH_ REV__ENSG00000101680|ENST00000389658|LAMA1;REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF;REV__LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant 3.5964929083625545 0.45626689593999237 1 TP 2 -1 14.776 0 0 1.3223 0 0 148.06099877792286 768.3217257135374 916.3827244914603 0 0 0 0 0 0 0 0.3807196863200844 0 TP 1.3223 - 18 + NaN NaN 105601.2 NaN 2702 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4566 30.909 NaN 268260 35 0 83584 0.261 + 18862 NAEPEPRSL 9 48 506.7565582977226 1011.4985636622453 2 506.7565002441406 MULTI HCD FTMS 0 0 0 4562 65218.25390625 0.06925719040788249 -6 0.10360527038574219 4 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 21.536976647645854 0.1742816388551942 1 {[QG]|[NA]}EKKP 6 5 33.473 0 0 3.3092 0 0 0 341.1103550042953 341.1103550042953 22.67606240177031 0 0 0 0 1 0 0.3807196863200844 0.8494850021680094 {[QG]|[NA]}EKKP 3.3092 - 23 NaN NaN 122219.7 NaN 2703 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4567 30.913 NaN 64018 35 0 18515 0.261 -1 HVIADQEVM 9 27 529.2528104183741 1056.4910679035481 2 529.2528076171875 MULTI HCD FTMS 0 0 0 4562 38670.03125 1 0 0 5 Oxidation (M) _HVIADQEVM(Oxidation (M))_ ENSG00000100941|ENST00000216832|PNN 10.823927491677226 0.26684000660059787 1 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.9313 0 0 792.3769149267888 0 792.3769149267888 0 30.969100130080562 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.9313 + + 5 + NaN NaN 84661.4 NaN 2704 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4568 30.916 NaN 111790 35 0 18178 0.261 + 19675 NVVKPERAN 9 34 513.7881633552421 1025.561773777284 2 513.7880249023438 MULTI HCD FTMS 0 0 0 4562 19113.919921875 0.5376062981225609 -2 0.0399322509765625 6 Unmodified _NVVKPERAN_ REV__ENSG00000073969|ENST00000398238|NSF;REV__nc|ENSG00000073969|P46459-2|NSF 12.240655878213236 0.2545997876781172 1 {[NV]|[RG]}VSWKV 7 -1 35.534 0 0 3.4648 0 0 0 210.0876601262419 210.0876601262419 28.543804089302398 0 0 0 0 0 0 0.3807196863200844 0 {[NV]|[RG]}VSWKV 3.4648 - 52 NaN NaN 92833.3 NaN 2705 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4569 30.919 NaN 62218 35 0 10275 0.263 -1 0 34 400.350341796875 NaN 0 400.350341796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102405.2 NaN 2706 1861 4562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4571 30.925 NaN 158850 35 0 38075 0.327 + 19592 NTIDQKIVER 10 33 405.8944216716755 1214.6614356152265 3 405.89453125 MULTI HCD FTMS 0 0 0 4570 12832.3369140625 0.17465171502835564 5 -0.110076904296875 1 Unmodified _NTIDQKIVER_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 3.5870582119611467 0.4563168352879256 1 [DV]{M(Oxidation (M))|F} 3 8 25.942 0 0 2.1357 0 0 0 850.474765043214 850.474765043214 15.48455006504028 0 0 0 0 0 2 0 0 [DV]{M(Oxidation (M))|F} 2.1357 - 17 NaN NaN 104254.4 NaN 2707 1862 4570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4572 30.929 NaN 13562 35 0 4557.3 0.261 -1 0 13 639.2953106677502 1276.5760684023003 2 639.796142578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84953.8 NaN 2708 1862 4570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4574 30.935 NaN 159830 35 0 11471 0.327 -1 MQPATFRCVL 10 47 408.20724570319777 NaN 0 408.2188415527344 PEAK HCD FTMS 0 0 0 4573 3514.772216796875 0.4752570972440285 3 -0.08318138122558594 1 Carbamidomethyl (C) _MQPATFRC(Carbamidomethyl (C))VL_ ENSG00000106819|ENST00000375544|ASPN 3.3196427980023873 0.3373431348853355 1 VE{I|L} 3 -1 10.177 0 0 1.2497 0 0 154.05576040425518 316.14106165103755 470.1968220552927 0 0 0 0 0 0 0 0 0 VE{I|L} 1.2497 - 23 + NaN NaN 107189.8 NaN 2709 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4575 30.939 NaN 164800 35 0 43475 0.261 + 2653 DVFPNQPGGKR 11 38 405.5475595864698 1213.6208493596093 3 405.5472717285156 MULTI HCD FTMS 0 0 0 4573 42631.625 0.8346272429798047 -3 0.0503997802734375 2 Unmodified _DVFPNQPGGKR_ ENSG00000099958|ENST00000318109|DERL3;ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-2|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;nc|ENSG00000099958|Q96Q80-5|DERL3 12.240655878213236 0.35042917576941135 1 [DV]{M(Oxidation (M))|F} 3 8 40.335 0 0 3.3235 0 0 0 849.4355520786124 849.4355520786124 40.3345298489313 0 0 0 0 1 2 0.28872548999643577 0 + [DV]{M(Oxidation (M))|F} 3.3235 + + 11 NaN NaN 103845.5 NaN 2710 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4576 30.943 NaN 35951 35 0 5387.5 0.261 + 16006 LPRDQMLK 8 23 500.78410941715276 999.5536659011055 2 500.78411865234375 MULTI HCD FTMS 0 0 0 4573 15696.8125 0.05900292760465837 17 -0.3638134002685547 3 Unmodified _LPRDQMLK_ MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|10|2|sense 6.723162845929126 0.5320176132289695 1 K{I|L} 2 7 17.959 0 0 1.7967 0 0 740.3622914044937 0 740.3622914044937 0 17.95880017344075 0 0 0 0 0 0 0 K{I|L} 1.7967 - 2 NaN NaN 91929.1 NaN 2711 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4577 30.946 NaN 52038 35 0 5601.8 0.261 -1 MGMGRMEM 8 35 487.68235261426514 973.3501522953303 2 487.6821594238281 MULTI HCD FTMS 0 0 0 4573 20430.201171875 0.7755891456136458 3 -0.08318138122558594 4 2 Oxidation (M) _M(Oxidation (M))GM(Oxidation (M))GRMEM_ ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 94441.1 NaN 2712 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4578 30.949 NaN 176630 35 0 35584 0.261 -1 NVTKEEPLM 9 29 538.768383177457 1075.522213421714 2 538.7682495117188 MULTI HCD FTMS 0 0 0 4573 15894.205078125 0.38709720230196754 -3 0.0503997802734375 5 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 16.149105407346934 0.22083165093524068 1 {[NV]|[RG]}T 3 -1 15.458 0 0 1.4372 0 0 0 758.3404635065061 758.3404635065061 9.225490200071285 0 0 0 0 0.5 0 0 0 {[NV]|[RG]}T 1.4372 + + 3 + NaN NaN 105556.8 NaN 2713 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4579 30.953 NaN 39578 35 0 5848.6 0.261 + 26341 SSEGQPFSR 9 29 497.7329572470175 993.451361560835 2 497.7327880859375 MULTI HCD FTMS 0 0 0 4573 13291.140625 0.6840849166072642 1 -0.03641510009765625 6 Unmodified _SSEGQPFSR_ ENST00000496406.1_1_2:160084338-160084836:+|nuORF 3.2813086475875832 0.32614229037259 1 {[CA]|SS}W 3 7 15.458 0 0 1.5559 0 0 0 630.3017672174436 630.3017672174436 10.853481135844875 0 0 0 0 0.5 0 0 0 {[CA]|SS}W 1.5559 - 3 + NaN NaN 92543 NaN 2714 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4580 30.956 NaN 30325 35 0 4198.2 0.261 -1 KMMTFGTGML 10 24 566.7640434982757 1131.5135340633512 2 567.2652587890625 MULTI HCD FTMS 0 0 0 4573 9594.599609375 0.2948177701999356 8 -0.19324684143066406 7 Oxidation (M) _KMMTFGTGM(Oxidation (M))L_ ENST00000578114.1_1_18:29205579-29207019:-|nuORF 1.1933415558491238 0.46898715808974617 1 {I|L} 1 -1 3.0989 0 0 0.27388 0 0 565.7394384596388 449.6641939752563 1015.4036324348951 0 0 0 0 0 0 0 0 0 {I|L} 0.27388 + + 2 + NaN NaN 86875.8 NaN 2715 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4581 30.959 NaN 26624 35 0 4314.7 0.262 + 12133 KKKKKKKKKSF 11 22 469.32846217586865 NaN 0 469.32867431640625 PEAK HCD FTMS 0 0 0 4573 10440.7802734375 0.5486160315502894 -17 0.3177356719970703 8 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 E 1 11 3.0989 0 0 0.33086 0 0 338.8008930023248 465.76972376041255 804.5706167627374 0 0 0 0 0 0 0 0 0 E 0.33086 - 1 + NaN NaN 79582.4 NaN 2716 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4582 30.963 NaN 24244 35 0 5545 0.261 + 23756 RRHKRFVS 8 16 543.3250363266617 1084.6355197201233 2 543.3248901367188 MULTI HCD FTMS 0 0 0 4573 10986.3544921875 0.6959430330238096 6 -0.15656089782714844 9 Unmodified _RRHKRFVS_ REV__ENSG00000167394|ENST00000300849|ZNF668;REV__nc|ENSG00000167394|Q96K58-2|ZNF668 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79107.8 NaN 2717 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4583 30.966 NaN 19096 35 0 4431.4 0.261 -1 VYHMYRER 8 15 585.279687978848 1168.5448230244958 2 585.26806640625 MULTI HCD FTMS 0 0 0 4573 5015.8984375 0.33624929902782374 -15 0.27448272705078125 10 Oxidation (M) _VYHM(Oxidation (M))YRER_ ENSG00000177674|ENST00000314340|AGTRAP;ENST00000471765.1_1_1:11807599-11814482:+|nuORF;ENST00000476512.5_1_1:11806200-11810246:+|nuORF;ENST00000491346.5_1_1:11806200-11810246:+|nuORF;ENST00000510878.1_1_1:11796255-11810246:+|nuORF;nc|ENSG00000177674|Q6RW13-2|AGTRAP 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103135.5 NaN 2718 1863 4573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4585 30.971 NaN 143380 35 0 42274 0.327 -1 NADPQAVTM 9 33 481.7160340118904 961.4175150905808 2 481.7158508300781 MULTI HCD FTMS 0 0 0 4584 66964.5234375 0.018226514313216296 67 -1.5241127014160156 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 AVT{M(Oxidation (M))|F} 4 -1 49.993 0 0 5.1999 0 0 525.219041892775 0 525.219041892775 0 49.992822134202015 0 0 0 1.805462187404089 0 0 0 AVT{M(Oxidation (M))|F} 5.1999 + + 41 NaN NaN 99107.4 NaN 2719 1864 4584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4586 30.976 NaN 27962 35 0 5445.7 0.261 + 13015 KYISKPENL 9 16 546.3086209917907 1090.6026890503813 2 546.30859375 MULTI HCD FTMS 0 0 0 4584 16531.37109375 0.051888438418585384 24 -0.48789405822753906 2 Unmodified _KYISKPENL_ ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF 4.897010918128616 0.31389406404703984 1 KY{I|L} 3 6 26.198 0 0 2.4021 0 0 0 683.3347262018186 683.3347262018186 26.197887582883936 0 0 0 0 0 0 0 0 + KY{I|L} 2.4021 + + 3 + NaN NaN 104520.3 NaN 2720 1864 4584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4587 30.979 NaN 30700 35 0 4860.6 0.261 + 25904 SNPRDWLNM 9 26 566.7640434982757 1131.5135340633512 2 567.2645263671875 MULTI HCD FTMS 0 0 0 4584 6000.3291015625 0.1843749315458588 9 -0.18685150146484375 3 Unmodified _SNPRDWLNM_ ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC 1.4819007175156935 0.3397831423917744 1 V 1 9 3.0989 0 0 0.27388 0 0 880.0288366529982 149.39116846256096 1029.4200051155592 0 0 0 0 0 0 0 0 0 V 0.27388 - 1 + NaN NaN 90460.1 NaN 2721 1864 4584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4588 30.983 NaN 43312 35 0 9386.2 0.261 -1 ACCEYMKL 8 34 509.21485479297655 NaN 0 509.21502685546875 PEAK HCD FTMS 0 0 0 4584 8879.423828125 0.6772967453512679 -5 0.11328697204589844 4 Carbamidomethyl (C) _AC(Carbamidomethyl (C))CEYMKL_ ENSG00000145332|ENST00000273963|KLHL8;nc|ENSG00000145332|Q9P2G9-2|KLHL8 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88858.1 NaN 2722 1864 4584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4590 30.988 NaN 297230 35 0 78041 0.326 -1 SSGPVDPMM 9 30 476.6911522156508 951.3677514981016 2 476.6910705566406 MULTI HCD FTMS 0 0 0 4589 129982.1328125 0.5202134456515153 4 -0.10339927673339844 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 26.242 0 0 2.7584 0 0 427.20652918994017 0 427.20652918994017 0 22.26280941356464 0 0 0 0.9247425010840047 0 0.3807196863200844 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.7584 + + 5 NaN NaN 133388 NaN 2723 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4591 30.992 NaN 223880 35 0 21673 0.261 + 9272 HPNDDDVHF 9 40 548.228302940141 1094.442052947082 2 548.228271484375 MULTI HCD FTMS 0 0 0 4589 95736.40625 0.3295335502353477 12 -0.24050331115722656 2 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 72.96794272382148 0.008127836904478181 1 HPNDDDVH{M(Oxidation (M))|F} 9 0 + 55.526 0 0 5.0734 5.0734 88.331 0 0 0 36.061603143133496 9.889917747712644 9.889917747712644 13.455612550363796 0 1.8424778212679485 0 0 0.4247425010840047 + + HPNDDDVH{M(Oxidation (M))|F};HPGGDDDVH{M(Oxidation (M))|F} 5.0734;3.844 +;- + 78 + NaN NaN 110999.4 NaN 2724 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4592 30.996 NaN 184530 35 0 29213 0.262 + 17 AAGVGDMVM 9 36 441.68865586833243 881.3627588034649 2 441.6885986328125 MULTI HCD FTMS 0 0 0 4589 134381.6875 0.9626515387163098 -1 0.01674652099609375 3 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 97.07464715276575 0.004340583992084827 1 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 76.024 0 0 8.6257 8.6257 88.549 0 0 0 2.158044088628941 2.158044088628941 2.158044088628941 2.158044088628941 0 2.7614393726401687 0 0.805462187404089 0 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.6257;8.3808 -;+ + 101 NaN NaN 125538 NaN 2725 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4593 30.999 NaN 388290 35 0 27719 0.261 -1 0 68 611.8251575138864 1221.6357620945728 2 611.824951171875 MULTI HCD FTMS 0 0 0 4589 159829.515625 0.3377786831507658 -4 0.09010124206542969 4 NaN NaN 1 {I|L}ENGKET{I|L} 8 -1 86.363 0 0 7.0694 0 0 319.1632252423844 0 319.1632252423844 0 75.39381281052492 0 0 0 1.305462187404089 0 0.8494850021680094 1.1421590589602533 {I|L}ENGKET{I|L} 7.0694 - 603 NaN NaN 146160.4 NaN 2726 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4594 31.003 NaN 36582 35 0 5938.6 0.261 -1 VMDHCWDS 8 23 533.1908059187049 NaN 0 533.19140625 PEAK HCD FTMS 0 0 0 4589 10877.5517578125 0.5475515303267274 68 -1.5501861572265625 5 Carbamidomethyl (C),Oxidation (M) _VM(Oxidation (M))DHC(Carbamidomethyl (C))WDS_ ENSG00000165164|ENST00000378653|CFAP47 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92600.6 NaN 2727 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4595 31.006 NaN 29535 35 0 6205 0.261 + 35303 YWKFHFQN 8 23 585.279687978848 1168.5448230244958 2 585.2665405273438 MULTI HCD FTMS 0 0 0 4589 6298.8359375 0.42225320051162624 -13 0.2673358917236328 6 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 1 W 1 7 3.0989 0 0 0.2652 0 0 429.7195799598458 549.7408541315061 979.460434091352 0 0 0 0 0 0 0 0 0 + W 0.2652 + + 1 + NaN NaN 91837.8 NaN 2728 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4596 31.009 NaN 20475 35 0 4373.6 0.261 + 2661 DVFRFAKNFA 10 14 607.8176378665397 NaN 0 607.8180541992188 PEAK HCD FTMS 0 0 0 4589 7980.60009765625 0.9060686083993129 1 -0.030019760131835938 7 Unmodified _DVFRFAKNFA_ ENSG00000197355|ENST00000409858|UAP1L1;nc|ENSG00000197355|Q3KQV9-2|UAP1L1 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82491 NaN 2729 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4597 31.013 NaN 13625 35 0 4129 0.261 + -1 MRFVRKQR 8 11 589.8297746881454 NaN 0 589.8301391601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RFVRKQR_ REV__ENSG00000172209|ENST00000304402|GPR22;REV__GPR22|p.R304Q|1|0.19|ENSG00000172209|chr7:107474971-107474971|G/A|missense_variant 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85376.1 NaN 2730 1865 4589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4599 31.018 NaN 142600 35 0 39044 0.327 -1 SAAAVDAGMAM 11 31 513.7151402458435 1025.4157275584869 2 513.7151489257812 MULTI HCD FTMS 0 0 0 4598 54362.2109375 0.6681704999964951 -6 0.13358116149902344 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 38.175570920033316 0.14869995854639997 1 {[NV]|[RG]}SVWKV 7 -1 47.255 0 0 4.6084 0 0 0 209.94176108986372 209.94176108986372 41.77062918686282 0 0 0 0 1.3494850021680094 0 0.805462187404089 0 {[NV]|[RG]}SVWKV 4.6084 - 94 NaN NaN 106108 NaN 2731 1866 4598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4600 31.022 NaN 88545 35 0 12603 0.261 + -1 TLQCRELCYM 10 29 425.85605591480936 1274.546338344628 3 426.53240966796875 MULTI HCD FTMS 0 0 0 4598 5068.0478515625 0.5324578668098406 -5 0.12012100219726562 2 Oxidation (M) _TLQCRELCYM(Oxidation (M))_ REV__ENST00000531572.1_1_11:8016648-8016843:+|nuORF 0.776531954647913 0.4711933975711956 1 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6452 0 0 946.4385025065407 0 946.4385025065407 0 15.484550065040281 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.6452 + + 4 + NaN NaN 99552.9 NaN 2732 1866 4598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4601 31.026 NaN 37352 35 0 5293.8 0.261 + 22248 QPADAERAL 9 23 485.75134944570897 969.488145958218 2 485.7509765625 MULTI HCD FTMS 0 0 0 4598 22390.109375 0.0272992020295681 24 -0.48801612854003906 3 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 3.2813086475875832 0.32614229037259 1 [QP]W 3 7 10.458 0 0 1.0787 0 0 0 555.2903536432249 555.2903536432249 4.9730248405664685 0 0 0 0 0 0 0 0 [QP]W 1.0787 - 5 + NaN NaN 87378.7 NaN 2733 1866 4598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4602 31.029 NaN 73574 35 0 10228 0.261 + 9856 HYVEKPSTF 9 28 554.2767604637204 1106.5389679942407 2 554.7782592773438 MULTI HCD FTMS 0 0 0 4598 11434.8359375 0.4714473189084837 -4 0.09334564208984375 4 Unmodified _HYVEKPSTF_ ENSG00000144591|ENST00000313597|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF;nc|ENSG00000144591|Q96IJ6-2|GMPPA 19.361941925380144 0.1930734562688509 1 HYVEK 5 4 57.959 0 0 5.2378 0 0 0 447.18818079166255 447.18818079166255 57.95880017344075 0 0 0 0 1 1.6989700043360187 0 0 + HYVEK 5.2378 + + 11 + NaN NaN 91844.5 NaN 2734 1866 4598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4604 31.035 NaN 1792000 35 0 688920 0.327 + 18863 NAEPEPRSL 9 61 506.7565582977226 1011.4985636622453 2 506.756591796875 MULTI HCD FTMS 0 0 0 4603 941682.0625 1 0 0 1 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 57.24910588100465 0.021429789259086996 1 {[QG]|[NA]}EPEP 6 3 63.205 0 0 6.2486 0 0 0 371.2036532037719 371.2036532037719 52.40803747765064 0 0 0 0 1.5 1.5228787452803376 0.805462187404089 0 + {[QG]|[NA]}EPEP 6.2486 + + 40 + NaN NaN 346741.6 NaN 2735 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4605 31.039 NaN 241640 35 0 53895 0.261 + 9380 HPTDVDYRV 9 35 551.2698845001086 1100.525216067017 2 551.2698974609375 MULTI HCD FTMS 0 0 0 4603 104129.734375 0.33231076624965156 6 -0.12335395812988281 2 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 26.268140514670165 0.13340543277302316 1 HPTD[DV]V[YR] 9 2 + 50.608 0 0 4.5985 4.5985 90.399 0 0 0 50.607887415777526 7.147642715192504 7.147642715192504 50.607887415777526 0 0.9247425010840047 0 0.4247425010840047 0 HPTD[DV]V[YR] 4.5985 - 25 + NaN NaN 115641.5 NaN 2736 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4606 31.043 NaN 238320 35 0 25872 0.261 + 24649 RYLSKATTL 9 53 526.8085989317378 1051.6026449302756 2 526.8084716796875 MULTI HCD FTMS 0 0 0 4603 155618.328125 1 0 0 3 Unmodified _RYLSKATTL_ ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-4|CDC16 36.506200033944 0.08138327636155518 1 ATT{I|L} 4 5 39.909 0 0 3.7951 0 0 647.3752115293556 0 647.3752115293556 0 17.909393809954892 0 0 0 0.5 0 0.7742275032520141 0 + ATT{I|L} 3.7951 + + 337 NaN NaN 113834.6 NaN 2737 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4607 31.046 NaN 122850 35 0 16807 0.261 + 8484 HADQAEIRSL 10 41 570.2938518458501 1138.5731507585 2 570.2938842773438 MULTI HCD FTMS 0 0 0 4603 73745.3125 0.07546262006114524 19 -0.3944244384765625 4 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 64.69154705217129 0.02435962300912059 1 HADQAE{I|L} 7 3 68.32 0 0 6.0005 0 0 0 371.20392786197505 371.20392786197505 57.862526176977056 0 0 0 0 2.548455006504028 0 0.3807196863200844 0.7302046884880937 + HADQAE{I|L} 6.0005 + + 84 + NaN NaN 100766.9 NaN 2738 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4608 31.049 NaN 176450 35 0 21899 0.261 -1 LGHEEALEM 9 38 522.737050747741 1043.459548562282 2 522.7368774414062 MULTI HCD FTMS 0 0 0 4603 55537.83984375 0.7897361918657937 -2 0.04675102233886719 5 Oxidation (M) _LGHEEALEM(Oxidation (M))_ ENSG00000197077|ENST00000358431|KIAA1671 30.636539890814138 0.10832830463492794 1 TE{I|L}ASA{I|L}E{M(Oxidation (M))|F} 9 -1 55.411 0 0 5.3103 0 0 64.00009549544048 0 64.00009549544048 0 55.411159568492465 0 0 0 0 0 0.3807196863200844 0 TE{I|L}ASA{I|L}E{M(Oxidation (M))|F} 5.3103 - 69 + NaN NaN 98677.5 NaN 2739 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4609 31.053 NaN 33587 35 0 5579.3 0.261 + 5780 FPASHDPDP 9 22 491.7168178322205 981.419082731241 2 491.7165832519531 MULTI HCD FTMS 0 0 0 4603 13997.267578125 0.4528163370217773 23 -0.4712848663330078 6 Unmodified _FPASHDPDP_ ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95408.5 NaN 2740 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4610 31.056 NaN 67576 35 0 4966.6 0.261 + 24486 RYLEEERP 8 38 546.2781141069601 1090.54167528072 2 546.2776489257812 MULTI HCD FTMS 0 0 0 4603 12221.490234375 0.5319573383579108 -1 0.01673126220703125 7 Unmodified _RYLEEERP_ ENSG00000164070|ENST00000296464|HSPA4L 9.38312468134398 0.524755689532147 1 [YR]{I|L}ENG 6 4 35.679 0 0 3.2717 0 0 0 355.16311017745755 355.16311017745755 30.194634427571856 0 0 0 0 1.2302046884880937 0 0 0.4247425010840047 [YR]{I|L}ENG 3.2717 - 35 NaN NaN 96043 NaN 2741 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4611 31.059 NaN 27307 35 0 6614.2 0.261 + 35707 YYLFIIWD 8 19 566.7893577006349 1131.5641624680698 2 567.2654418945312 MULTI HCD FTMS 0 0 0 4603 1743.361328125 0.19429298199559522 -3 0.06349754333496094 8 Unmodified _YYLFIIWD_ ENSG00000151012|ENST00000280612|SLC7A11 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86075.7 NaN 2742 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4612 31.063 NaN 28595 35 0 6420.2 0.261 -1 WYLMWLQKA 9 14 627.8201501018948 1253.6257472705895 2 627.8201904296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _WYLM(Oxidation (M))WLQKA_ ENST00000417586.1_1_22:42528609-42528828:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83297.2 NaN 2743 1867 4603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4614 31.068 NaN 76156 35 0 12849 0.327 -1 KYLEERAMRQF 11 26 496.2537710537864 1485.7394837615593 3 496.2545471191406 MULTI HCD FTMS 0 0 0 4613 16582.732421875 0.22830230292159737 25 -0.491607666015625 1 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.214830529360525 0.41359283248740725 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.20858 0 0 924.4468945055031 411.19089685611567 1335.6377913616188 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.20858 + + 3 + NaN NaN 98489 NaN 2744 1868 4613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4615 31.072 NaN 36698 35 0 3627.4 0.261 + -1 LPMCCSGQP 9 27 533.2124173691833 1064.4102818051665 2 533.212158203125 MULTI HCD FTMS 0 0 0 4613 13308.8046875 1 0 0 2 2 Carbamidomethyl (C),Oxidation (M) _LPM(Oxidation (M))C(Carbamidomethyl (C))C(Carbamidomethyl (C))SGQP_ REV__ENST00000336095.10_1_20:3914180-3914489:-|nuORF 0.6014990680409731 0.3464572424761564 1 G 1 -1 6.9897 0 0 0.65667 0 0 575.7268844436416 428.63239465885005 1004.3592791024917 0 0 0 0 0 0 0 0 0 G 0.65667 + + 1 + NaN NaN 74633.7 NaN 2745 1868 4613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4616 31.076 NaN 31345 35 0 4733.1 0.261 + -1 TYRKVDEM 8 23 529.2528104183741 1056.4910679035481 2 529.2527465820312 MULTI HCD FTMS 0 0 0 4613 4966 0.12841986001756853 7 -0.12988662719726562 3 Oxidation (M) _TYRKVDEM(Oxidation (M))_ REV__tr|U7T5Q5|U7T5Q5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00137PE=4SV=1 4.3292370932331545 0.5355693454741696 1 V{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.3868 0 0 792.3837147443375 0 792.3837147443375 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3868 - 3 NaN NaN 80944.1 NaN 2746 1868 4613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4617 31.079 NaN 26240 35 0 6424.4 0.261 + 35708 YYLFIIWD 8 20 566.7893577006349 1131.5641624680698 2 566.7903442382812 MULTI HCD FTMS 0 0 0 4613 7189.318359375 0.4496658868524869 -3 0.0800323486328125 4 Unmodified _YYLFIIWD_ ENSG00000151012|ENST00000280612|SLC7A11 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83730.1 NaN 2747 1868 4613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4618 31.083 NaN 18306 35 0 3460.7 0.261 -1 GFICHLFFPV 10 20 618.8147012738324 1235.6148496144647 2 618.8139038085938 MULTI HCD FTMS 0 0 0 4613 9651.736328125 0.7680347207111995 -3 0.0800323486328125 5 Carbamidomethyl (C) _GFIC(Carbamidomethyl (C))HLFFPV_ ENST00000527748.5_1_1:110089288-110089459:+|nuORF 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87330.2 NaN 2748 1868 4613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4619 31.086 NaN 29217 35 0 10263 0.264 -1 AACEMLQDRCR 11 21 456.8642420011711 NaN 0 456.8647766113281 PEAK HCD FTMS 0 0 0 4613 7651.41650390625 0.550263064080969 6 -0.10015106201171875 6 Carbamidomethyl (C),Oxidation (M) _AAC(Carbamidomethyl (C))EM(Oxidation (M))LQDRCR_ ENSG00000204560|ENST00000376442|DHX16 0.08335046087909445 0.3418837022149213 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80452.8 NaN 2749 1868 4613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4621 31.091 NaN 1405400 35 0 171470 0.327 + 24520 RYLENGKETL 10 84 408.2189909486664 1221.6351434461992 3 408.2192077636719 MULTI HCD FTMS 0 0 0 4620 681161.5625 0.9884917367233993 1 -0.023336410522460938 1 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 64.68765255105646 0.024373786448983335 1 [YR]{I|L}ENG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 10 0 + 75.138 0 0 6.1506 6.1506 87.37 0 0 0 7.269987279362624 62.54046273915029 7.269987279362624 9.164539485499247 0 2.1237125054200234 0 0 0.8494850021680094 + + [YR]{I|L}ENG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[YR]{I|L}EGGG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{[QN]|[E{I|L}]|[KN]}[YR]NG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[YR]{I|L}NEG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[YR]{I|L}GGEG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[TA]NG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 6.1506;5.4004;5.3147;5.1253;5.0695;5.0344 +;-;-;-;-;- + 519 NaN NaN 300641.2 NaN 2750 1869 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4622 31.096 NaN 103050 35 0 10092 0.261 + 9226 HPLSDHEATL 10 38 560.2751367728551 1118.5357206125102 2 560.2750854492188 MULTI HCD FTMS 0 0 0 4620 41437.57421875 0.007069152732535044 147 -3.4954280853271484 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 19.256988751693697 0.33098864134661865 1 T{I|L} 2 8 22.959 0 0 2.0526 0 0 886.3937490570268 0 886.3937490570268 0 0.3072623954359699 0 0 0 0 0 0.5 0 + T{I|L} 2.0526 + + 29 NaN NaN 95248.5 NaN 2751 1869 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4623 31.099 NaN 93019 35 0 26628 0.264 + 2654 DVFPNQPGGKR 11 29 405.5475595864698 1213.6208493596093 3 405.5475769042969 MULTI HCD FTMS 0 0 0 4620 26710.845703125 0.5229357198290748 3 -0.050029754638671875 3 Unmodified _DVFPNQPGGKR_ ENSG00000099958|ENST00000318109|DERL3;ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-2|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;nc|ENSG00000099958|Q96Q80-5|DERL3 8.155526934196011 0.3831532958467648 1 [DV]{M(Oxidation (M))|F} 3 8 39.705 0 0 3.2716 0 0 0 849.4317790329482 849.4317790329482 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 + [DV]{M(Oxidation (M))|F} 3.2716 + + 9 + NaN NaN 90742.1 NaN 2752 1869 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4624 31.103 NaN 177130 35 0 52510 0.261 -1 0 30 485.75134944570897 969.488145958218 2 486.2433776855469 MULTI HCD FTMS 0 0 0 4620 10354.736328125 0.026341832174502228 28 -0.5735645294189453 4 NaN NaN 1 AA{[ET]|[MV]}{M(Oxidation (M))|F} 5 -1 15.713 0 0 1.6208 0 0 130.11100997650016 317.1247957818969 447.2358057583971 0 0 0 0 0 0 0 0.3494850021680094 0 AA{[ET]|[MV]}{M(Oxidation (M))|F} 1.6208 - 15 + NaN NaN 104923.4 NaN 2753 1869 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4625 31.106 NaN 215140 35 0 42328 0.261 -1 NVTKEEPLM 9 35 538.768383177457 1075.522213421714 2 538.7682495117188 MULTI HCD FTMS 0 0 0 4620 31745.654296875 0.7731531022258213 3 -0.050029754638671875 5 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 16.149105407346934 0.22083165093524068 1 {[NV]|[RG]}T 3 -1 14.705 0 0 1.3672 0 0 0 758.3411348932249 758.3411348932249 8.762874945799766 0 0 0 0 0.4247425010840047 0 0 0 {[NV]|[RG]}T 1.3672 + + 3 + NaN NaN 106801.5 NaN 2754 1869 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4626 31.109 NaN 29875 35 0 3980.4 0.261 -1 HPASDKIEAYM 11 22 639.2953106677502 1276.5760684023003 2 639.2952880859375 MULTI HCD FTMS 0 0 0 4620 18275.875 0.795499413656723 -6 0.15656089782714844 6 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.498486711656943 0.4079631525365919 1 A{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2109 0 0 971.4261341779312 0 971.4261341779312 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[ES]|[DT]|[{I|L}C]} 1.2109 - 3 NaN NaN 88327.2 NaN 2755 1869 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4628 31.115 NaN 156280 35 0 44331 0.327 -1 NADPQAVTM 9 36 481.7160340118904 961.4175150905808 2 481.7159423828125 MULTI HCD FTMS 0 0 0 4627 63926.32421875 0.017399572244426197 73 -1.5968971252441406 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 AVT{M(Oxidation (M))|F} 4 -1 49.993 0 0 5.1999 0 0 525.2186146466812 0 525.2186146466812 0 49.992822134202015 0 0 0 1.805462187404089 0 0 0 AVT{M(Oxidation (M))|F} 5.1999 + + 64 NaN NaN 102378.9 NaN 2756 1870 4627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4629 31.119 NaN 78971 35 0 10960 0.261 + 9857 HYVEKPSTF 9 34 554.2767604637204 1106.5389679942407 2 554.2775268554688 MULTI HCD FTMS 0 0 0 4627 30786.419921875 0.8052670641715618 3 -0.043369293212890625 2 Unmodified _HYVEKPSTF_ ENSG00000144591|ENST00000313597|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF;nc|ENSG00000144591|Q96IJ6-2|GMPPA 20.41453444215458 0.18397929046831515 1 HYV 3 6 48.188 0 0 4.3548 0 0 0 704.3261202447874 704.3261202447874 42.15742599783501 0 0 0 0 0.5 1.6989700043360187 0 0 + HYV 4.3548 + + 7 + NaN NaN 98817 NaN 2757 1870 4627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4630 31.123 NaN 28070 35 0 4902.6 0.261 + -1 HPNFLCRPE 9 19 585.279687978848 1168.5448230244958 2 585.2796630859375 MULTI HCD FTMS 0 0 0 4627 9316.8623046875 0.6245717408607172 -8 0.1900615692138672 3 Carbamidomethyl (C) _HPNFLC(Carbamidomethyl (C))RPE_ REV__ENSG00000165807|ENST00000298705|PPP1R36 2.0597508629832335 0.3354026079994024 1 Y[EP] 3 -1 10.458 0 0 0.89492 0 0 761.3666859357437 0 761.3666859357437 0 10.45757490560675 0 0 0 0 0 0 0 Y[EP] 0.89492 - 2 NaN NaN 88292.3 NaN 2758 1870 4627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4632 31.128 NaN 661110 35 0 52232 0.327 -1 0 87 611.8251575138864 1221.6357620945728 2 611.824951171875 MULTI HCD FTMS 0 0 0 4631 416172.84375 0.8795266292041258 2 -0.030019760131835938 1 NaN NaN 1 {I|L}ENGKET{I|L} 8 -1 91.892 0 0 7.522 0 0 319.1639576642594 0 319.1639576642594 0 62.825834421237516 0 0 0 1.5114393726401687 0 1.579689690656103 1.0994850021680094 {I|L}ENGKET{I|L} 7.522 - 2923 NaN NaN 176771.9 NaN 2759 1871 4631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4633 31.133 NaN 127520 35 0 10590 0.261 + 9273 HPNDDDVHF 9 34 548.228302940141 1094.442052947082 2 548.2283325195312 MULTI HCD FTMS 0 0 0 4631 56679.9296875 0.19509755158593867 18 -0.3544578552246094 2 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 53.832793166522166 0.026208976789938845 1 VH{M(Oxidation (M))|F} 3 6 34.693 0 0 3.1699 0 0 693.2359415979627 0 693.2359415979627 0 3.0102999566398125 0 0 0 1 0 0 0 + VH{M(Oxidation (M))|F} 3.1699 + + 40 NaN NaN 101010.5 NaN 2760 1871 4631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4634 31.136 NaN 22961 35 0 5306.5 0.261 + 33482 YHVIWHWE 8 17 585.279687978848 1168.5448230244958 2 585.2679443359375 MULTI HCD FTMS 0 0 0 4631 2346.966064453125 0.15733286944457864 -7 0.1568317413330078 3 Unmodified _YHVIWHWE_ ENSG00000176402|ENST00000312891|GJC3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 111797.1 NaN 2761 1871 4631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4636 31.141 NaN 149110 35 0 23041 0.327 + 18 AAGVGDMVM 9 37 441.68865586833243 881.3627588034649 2 441.6886291503906 MULTI HCD FTMS 0 0 0 4635 107302.265625 0.7686664234786638 6 -0.10716438293457031 1 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 85.35673624503755 0.00464763827098139 1 AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 76.181 0 0 8.6436 8.6436 89.631 0 0 0 3.4678748622465605 4.40491538680881 3.4678748622465605 4.40491538680881 0 2.7302046884880937 0 0.3807196863200844 0 + + AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.6436;8.1438 +;- + 82 + NaN NaN 107233.3 NaN 2762 1872 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4637 31.146 NaN 162270 35 0 54062 0.261 -1 SAAAVDAGMAM 11 28 513.7151402458435 1025.4157275584869 2 513.7151489257812 MULTI HCD FTMS 0 0 0 4635 81359.7890625 1 0 0 2 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 38.175570920033316 0.14869995854639997 1 [QT]AVWK 6 -1 42.88 0 0 4.1818 0 0 0 309.01158872475565 309.01158872475565 38.27623146104628 0 0 0 0 1.4247425010840047 0 0.7742275032520141 0 [QT]AVWK 4.1818 - 56 NaN NaN 106363.8 NaN 2763 1872 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4638 31.149 NaN 50218 35 0 6727.6 0.261 + 18020 MLLGHHLP 8 34 459.25667869741466 NaN 0 459.2417297363281 PEAK HCD FTMS 0 0 0 4635 2015.7337646484375 0.41611973259701857 -6 0.12340927124023438 3 Unmodified _MLLGHHLP_ ENST00000509783.5_1_5:87966899-87980575:-|nuORF;ENST00000513805.5_1_5:87966879-87980629:-|nuORF 2.8892196856762586 0.38822285293237185 1 {I|L} 1 7 6.9897 0 0 0.76265 0 0 244.11893493213557 556.2738131158811 800.3927480480168 0 0 0 0 0 0 0 0 0 + {I|L} 0.76265 + + 1 + NaN NaN 90785.6 NaN 2764 1872 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4639 31.153 NaN 26146 35 0 9647.4 0.261 -1 HVCVPERW 8 17 541.7629543902176 1081.511355847235 2 542.3174438476562 MULTI HCD FTMS 0 0 0 4635 4692.99462890625 0.5420863622196677 -6 0.12340927124023438 4 Carbamidomethyl (C) _HVC(Carbamidomethyl (C))VPERW_ ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81575.5 NaN 2765 1872 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4641 31.158 NaN 119910 35 0 22960 0.327 + 3784 EPDWHYRWS 9 35 425.85605591480936 1274.546338344628 3 426.5324401855469 MULTI HCD FTMS 0 0 0 4640 2960.131103515625 0.3109964899738382 2 -0.039813995361328125 1 Unmodified _EPDWHYRWS_ REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF 0.9622753412299311 0.3437222896773173 1 AY{M(Oxidation (M))|F} 3 -1 23.812 0 0 1.8683 0 0 875.4003555338844 0 875.4003555338844 0 12.843181179205061 0 0 0 0 0 0 0 AY{M(Oxidation (M))|F} 1.8683 - 12 + NaN NaN 102112.5 NaN 2766 1873 4640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4642 31.163 NaN 18760 35 0 5176.6 0.261 + 20840 PHWAEEFFVS 10 17 624.7878383510246 1247.561123768849 2 624.7874755859375 MULTI HCD FTMS 0 0 0 4640 3986.806640625 0.06849493647949426 36 -0.7907390594482422 2 Unmodified _PHWAEEFFVS_ ENST00000555746.5_3_14:35452094-35465902:+|nuORF 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 85996.9 NaN 2767 1873 4640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4644 31.168 NaN 603990 35 0 224160 0.327 + 18864 NAEPEPRSL 9 49 506.7565582977226 1011.4985636622453 2 506.7565002441406 MULTI HCD FTMS 0 0 0 4643 286955.8125 0.3047268541339556 7 -0.147247314453125 1 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 38.175570920033316 0.07371992880350783 1 {[QG]|[NA]}E[EP][R{I|L}][PS] 9 2 + 47.851 0 0 4.7307 4.7307 90.512 0 0 0 7.917112166456448 39.11377448150638 7.917112166456448 47.85089953570662 0 1.5 1.5228787452803376 0.3494850021680094 0.8494850021680094 {[QG]|[NA]}E[EP][R{I|L}][PS] 4.7307 - 20 NaN NaN 170259.5 NaN 2768 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4645 31.172 NaN 189620 35 0 42730 0.261 -1 HLQLMRFM 8 41 546.2781141069601 1090.54167528072 2 546.7698364257812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _HLQLM(Oxidation (M))RFM_ ENSG00000187555|ENST00000344836|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7 5.760428011301431 0.5334459684533844 1 VH{I|L} 3 -1 14.693 0 0 1.3473 0 0 130.11172300513437 608.1969088190061 738.3086318241405 0 0 0 0 0 0 0 0 0 VH{I|L} 1.3473 - 88 + NaN NaN 106931.2 NaN 2769 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4646 31.176 NaN 64714 35 0 7325.1 0.261 + 24650 RYLSKATTL 9 26 526.8085989317378 1051.6026449302756 2 526.8084106445312 MULTI HCD FTMS 0 0 0 4643 40266.51171875 0.25875173062138307 7 -0.147247314453125 3 Unmodified _RYLSKATTL_ ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-4|CDC16 15.248480904072842 0.22861284681709862 1 ATT{I|L} 4 5 35.974 0 0 3.4209 0 0 647.3754749982437 0 647.3754749982437 0 30.48963451112506 0 0 0 0.5 0 0.3807196863200844 0 + ATT{I|L} 3.4209 + + 26 NaN NaN 103722 NaN 2770 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4647 31.179 NaN 128970 35 0 20012 0.261 -1 LGHEEALEM 9 37 522.737050747741 1043.459548562282 2 522.7366943359375 MULTI HCD FTMS 0 0 0 4643 32288.16796875 0.45913083558350337 5 -0.1037750244140625 4 Oxidation (M) _LGHEEALEM(Oxidation (M))_ ENSG00000197077|ENST00000358431|KIAA1671 25.399314129420986 0.14091189997036632 1 A{I|L}E{M(Oxidation (M))|F} 4 -1 43.686 0 0 4.1866 0 0 565.2477284162125 0 565.2477284162125 0 42.97228775315752 0 0 0 1.1747425010840047 0 0 0 A{I|L}E{M(Oxidation (M))|F} 4.1866 + + 43 NaN NaN 102382.8 NaN 2771 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4648 31.183 NaN 90872 35 0 11180 0.261 + 29993 VFKELAQGTF 10 45 570.306807214844 NaN 0 570.293701171875 PEAK HCD FTMS 0 0 0 4643 2397.660888671875 1 0 0 5 Unmodified _VFKELAQGTF_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.150570793230772 0.3314968072639206 1 ADQAE{I|L} 6 -1 30.623 0 0 2.6895 0 0 137.08314985584997 371.2054842584594 508.2886341143094 0 0 0 0 0 0 0 0.4247425010840047 0 ADQAE{I|L} 2.6895 - 53 + NaN NaN 95461.3 NaN 2772 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4649 31.186 NaN 101590 35 0 20665 0.261 + 9381 HPTDVDYRV 9 27 551.2698845001086 1100.525216067017 2 551.2698364257812 MULTI HCD FTMS 0 0 0 4643 38277.58984375 0.12215584038040472 13 -0.2711067199707031 6 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 19.256988751693697 0.19398022840297344 1 HP 2 7 24.464 0 0 2.2229 0 0 0 863.3871434428813 863.3871434428813 8.979400086720375 0 0 0 0 0.5 0 0 0 + HP 2.2229 + + 6 + NaN NaN 97369.8 NaN 2773 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4650 31.189 NaN 19497 35 0 3071.3 0.261 -1 LPVCGESCC 9 17 533.7036772755489 NaN 0 533.8034057617188 PEAK HCD FTMS 0 0 0 4643 4742.75830078125 0.3435866925985859 18 -0.38134765625 7 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))LPVC(Carbamidomethyl (C))GESC(Carbamidomethyl (C))C_ ENST00000310653.10_2_11:73471690-73471855:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96610.1 NaN 2774 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4651 31.193 NaN 35351 35 0 9682.2 0.261 + 12134 KKKKKKKKKSF 11 20 469.32846217586865 NaN 0 469.3284606933594 PEAK HCD FTMS 0 0 0 4643 9977.783203125 0.5242876184736845 -6 0.10015106201171875 8 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99035.1 NaN 2775 1874 4643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4653 31.198 NaN 83524 35 0 12414 0.326 + 12589 KTQENGTCTL 10 34 547.7604136517594 1093.5062743703188 2 549.2647094726562 MULTI HCD FTMS 0 0 0 4652 27583.8515625 0.8968658379280756 2 -0.030584335327148438 1 Unmodified _KTQENGTCTL_ ENSG00000117090|ENST00000302035|SLAMF1;nc|ENSG00000117090|Q13291-2|SLAMF1;nc|ENSG00000117090|Q13291-3|SLAMF1;nc|ENSG00000117090|Q13291-4|SLAMF1 4.5288652416199255 0.4513317009562028 1 KTQDR 5 7 36.454 0 0 3.3336 0 0 0 462.1600741022094 462.1600741022094 28.494850021680094 0 0 0 0 0 0 0 0 KTQDR 3.3336 - 23 + NaN NaN 110019.3 NaN 2776 1875 4652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4655 31.205 NaN 61335 35 0 9374.1 0.327 + -1 PCHITCVI 8 31 500.2407260950037 998.4668992568074 2 500.2406005859375 MULTI HCD FTMS 0 0 0 4654 32171.548828125 0.8668721491658323 1 -0.023046493530273438 1 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))HITC(Carbamidomethyl (C))VI_ REV__ENST00000305536.10_1_X:129546956-129547052:+|nuORF 2.302733041254933 0.5385759549224092 1 V{I|L} 2 -1 20.969 0 0 2.1001 0 0 768.3055287091812 0 768.3055287091812 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.1001 + + 1 NaN NaN 92606.1 NaN 2777 1876 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4656 31.21 NaN 34740 35 0 5017.6 0.261 -1 NPDTHSWEM 9 29 566.7221035080923 1131.4296540829846 2 566.7218017578125 MULTI HCD FTMS 0 0 0 4654 11303.513671875 0.5082860637341686 -2 0.037273406982421875 2 Oxidation (M) _NPDTHSWEM(Oxidation (M))_ ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 9.38312468134398 0.279288223203164 1 E{M(Oxidation (M))|F} 2 -1 23.271 0 0 2.0568 0 0 837.3394642560562 0 837.3394642560562 0 13.337359645711329 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F} 2.0568 + + 5 NaN NaN 88328.4 NaN 2778 1876 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4657 31.213 NaN 62244 35 0 9497.8 0.261 + 30456 VLQQHLQQ 8 23 497.27910411160235 992.5436552900047 2 497.7821044921875 MULTI HCD FTMS 0 0 0 4654 10193.806640625 0.919282068507023 -2 0.037273406982421875 3 Unmodified _VLQQHLQQ_ REV__ENSG00000135931|ENST00000611582|ARMC9;REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9 5.760428011301431 0.5334459684533844 1 {[QV]|[N{I|L}]|[RA]|[KV]}A 3 -1 25.686 0 0 2.5879 0 0 0 691.3421114557249 691.3421114557249 0.6246936830414995 0 0 0 0 0 1.5228787452803376 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}A 2.5879 - 7 + NaN NaN 91462.3 NaN 2779 1876 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4658 31.216 NaN 19603 35 0 4619.5 0.261 + 6828 FPSSALCASVT 11 14 541.7629543902176 1081.511355847235 2 542.2630004882812 MULTI HCD FTMS 0 0 0 4654 1624.262451171875 0.1876180547964892 -3 0.047351837158203125 4 Unmodified _FPSSALCASVT_ REV__ENST00000263097.8_1_19:1037929-1038361:+|nuORF 2.735195868890462 0.4069250265843076 1 SA 2 -1 10.969 0 0 1.0142 0 0 331.1491254778976 589.2663668268186 920.4154923047163 0 0 0 0 0 0 0 0 0 SA 1.0142 + + 3 + NaN NaN 76146.6 NaN 2780 1876 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4659 31.22 NaN 19928 35 0 3902.6 0.261 + 33357 YGGETNSCGYN 11 22 582.7168469587289 1163.4191409842576 2 582.7164306640625 MULTI HCD FTMS 0 0 0 4654 7169.39013671875 0.6495017080100771 -5 0.07737159729003906 5 Unmodified _YGGETNSCGYN_ REV__ENSG00000138829|ENST00000262464|FBN2 0 0.41892066650488113 1 A 1 -1 1.5938 0 0 0.13699 0 0 599.5857802438264 489.7699373834594 1089.355717627286 0 0 0 0 0 0 0 0 0 A 0.13699 - 1 + NaN NaN 94748.7 NaN 2781 1876 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4660 31.223 NaN 29787 35 0 7789 0.261 + 30766 VPNRQSPWA 9 17 527.7744888537951 1053.5344247743901 2 529.2528076171875 MULTI HCD FTMS 0 0 0 4654 1809.1177978515625 0.2545670346948427 -2 0.037273406982421875 6 Unmodified _VPNRQSPWA_ REV__SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|50|1|anti-sense 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105589.5 NaN 2782 1876 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4662 31.229 NaN 450700 35 0 57772 0.327 + 24521 RYLENGKETL 10 60 408.2189909486664 1221.6351434461992 3 408.2190856933594 MULTI HCD FTMS 0 0 0 4661 207504.546875 0.3011275756160577 9 -0.20067214965820312 1 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 42.067849460122346 0.12746220957372306 1 NGG{I|L}ST{I|L} 7 7 54.94 0 0 4.4972 0 0 561.2909371299942 0 561.2909371299942 0 43.970544657224835 0 0 0 1.8182503180159344 0 0.6307196863200843 0.3494850021680094 NGG{I|L}ST{I|L} 4.4972 - 136 + NaN NaN 150878.9 NaN 2783 1877 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4663 31.233 NaN 204410 35 0 42794 0.261 -1 VVDPNDPQM 9 36 515.7291550478394 1029.4437571624787 2 515.7290649414062 MULTI HCD FTMS 0 0 0 4661 82929.296875 0.6422393913078676 -3 0.06031990051269531 2 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 36.506200033944 0.08138327636155518 1 VVD[NP]D[QP]{M(Oxidation (M))|F} 9 -1 + 45.888 0 0 4.4576 4.4576 90.018 0 0 0 15.667790332608575 45.88817465177996 15.667790332608575 45.88817465177996 0 1.8494850021680094 1.3010299956639813 0 0 VVD[NP]D[QP]{M(Oxidation (M))|F} 4.4576 + + 49 NaN NaN 121764.5 NaN 2784 1877 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4664 31.237 NaN 52720 35 0 10678 0.261 -1 KYLEERAMRQF 11 25 496.2537710537864 1485.7394837615593 3 496.2544250488281 MULTI HCD FTMS 0 0 0 4661 11499.6435546875 0.15832101969210985 34 -0.7602901458740234 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.41447547578978133 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5627102145625 1191.5627102145625 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.4114 + + 1 + NaN NaN 86344.6 NaN 2785 1877 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4665 31.24 NaN 12950 35 0 2593.3 0.261 + 12028 KHQKYRRY 8 13 589.8297746881454 NaN 0 589.8300170898438 PEAK HCD FTMS 0 0 0 4661 6885.267578125 0.8574772401996889 4 -0.08692741394042969 4 Unmodified _KHQKYRRY_ REV__nc|ENSG00000188732|A4D161-3|FAM221A 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79852.7 NaN 2786 1877 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4666 31.243 NaN 44213 35 0 7771.1 0.264 -1 TCCFCWCCCC 10 30 411.1047398781874 NaN 0 410.9091796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _TC(Carbamidomethyl (C))CFCWCCCC_ ENSG00000091844|ENST00000206262|RGS17 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94561.6 NaN 2787 1877 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4668 31.249 NaN 1434200 35 0 447030 0.327 + 23586 RPEEDAAAL 9 50 486.2433460183248 970.4721391034496 2 486.2433166503906 MULTI HCD FTMS 0 0 0 4667 1120114.25 1 0 0 1 Unmodified _RPEEDAAAL_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 59.368380827593164 0.01846506874148156 1 [EP]ERDAAA{I|L} 9 2 + 89.988 0 0 9.2726 9.2726 88.341 0 0 0 14.259687322722812 16.478174818886373 14.259687322722812 0.044321917401077826 0 1.6861818737241734 1.5228787452803376 0.805462187404089 0 [EP]ERDAAA{I|L};[EP]EDRAAA{I|L};[EP]REDAAA{I|L};[EP]ERADAA{I|L};[EP]READAA{I|L};[RP]EEDAAA{I|L};[RP]EEADAA{I|L};[EP]ERDG[VG]{I|L};[EP]E[VG]DGR{I|L};[EP]ED[VG]GR{I|L} 9.2726;9.2681;9.0124;8.3887;8.1284;7.8033;6.9193;5.6076;5.6076;5.603 -;-;-;-;-;+;-;-;-;- + 403 NaN NaN 285379.6 NaN 2788 1878 4667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4669 31.253 NaN 145370 35 0 42963 0.261 -1 NADPQAVTM 9 28 481.71612515155437 961.4176973699088 2 481.7160949707031 MULTI HCD FTMS 0 0 0 4667 69289.6484375 0.04815912291255398 -43 0.8176193237304688 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 30.7034409873982 0.10802119112323902 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 -1 + 57.101 0 0 5.9392 5.9392 92.899 0 0 0 45.11107503885448 5.915149811213496 5.915149811213496 57.10077508221467 0 2.4247425010840047 0 0 0 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 5.9392 + + 43 + NaN NaN 101887.8 NaN 2789 1878 4667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4670 31.257 NaN 83083 35 0 7395.6 0.261 + 9227 HPLSDHEATL 10 29 560.2751367728551 1118.5357206125102 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4667 35383.05078125 0.006036265269662424 156 -3.8001632690429688 3 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 6.2057823575117 0.44245551207394906 1 HP 2 8 18.443 0 0 1.6489 0 0 0 881.3980806940061 881.3980806940061 7.206225184280797 0 0 0 0 0.5 0 0 0 + HP 1.6489 + + 6 + NaN NaN 89681.5 NaN 2790 1878 4667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4671 31.26 NaN 26214 35 0 6100.4 0.261 -1 HPASDKIEAYM 11 16 639.2953106677502 1276.5760684023003 2 639.2952270507812 MULTI HCD FTMS 0 0 0 4667 21213.025390625 0.9233456269605349 3 -0.06683731079101562 4 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 3.876331618118854 0.4019203928379901 1 HPA 3 -1 26.198 0 0 2.0522 0 0 0 968.4040621393186 968.4040621393186 26.197887582883936 0 0 0 0 0 0 0 0 HPA 2.0522 + + 4 + NaN NaN 80935.4 NaN 2791 1878 4667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4672 31.263 NaN 27806 35 0 6163.5 0.261 + 35304 YWKFHFQN 8 15 585.279687978848 1168.5448230244958 2 585.2664184570312 MULTI HCD FTMS 0 0 0 4667 14917.201171875 1 0 0 5 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101606.6 NaN 2792 1878 4667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4673 31.267 NaN 55337 35 0 6731.2 0.261 + 3378 EESDLSRQY 9 33 563.7542896496109 1125.4940263660217 2 563.7553100585938 MULTI HCD FTMS 0 0 0 4667 14780.759765625 0.18881746843065822 -6 0.10716438293457031 6 Unmodified _EESDLSRQY_ ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 3.5964929083625545 0.32375295897743744 1 [QA]Q 3 8 10.458 0 0 0.92915 0 0 0 795.3278902643186 795.3278902643186 1.5051499783199063 0 0 0 0 0 0 0 0 [QA]Q 0.92915 - 18 + NaN NaN 86995.5 NaN 2793 1878 4667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4675 31.272 NaN 196540 35 0 28339 0.327 -1 0 40 611.8251575138864 1221.6357620945728 2 611.8248901367188 MULTI HCD FTMS 0 0 0 4674 84830.15625 0.17927739039657561 10 -0.2105846405029297 1 NaN NaN 1 ENGKET{I|L} 7 -1 64.016 0 0 5.2402 0 0 432.24885756660314 0 432.24885756660314 0 57.02639179909973 0 0 0 0.8494850021680094 0 0.805462187404089 0 ENGKET{I|L} 5.2402 - 98 NaN NaN 108704.2 NaN 2794 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4676 31.276 NaN 174640 35 0 38529 0.261 -1 NVTKEEPLM 9 28 538.768383177457 1075.522213421714 2 538.7681274414062 MULTI HCD FTMS 0 0 0 4674 20707.849609375 0.5043316485522895 13 -0.2775726318359375 2 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 10.073929032068715 0.27331982688540024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 101968.1 NaN 2795 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4677 31.28 NaN 62298 35 0 6818.6 0.261 + 18627 MYDDIAHS 8 27 476.1984329560208 NaN 0 476.1983642578125 PEAK HCD FTMS 0 0 0 4674 18550.87109375 0.7918218817891853 -1 0.023365020751953125 3 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 5.4846 0 0 0.57709 0 0 408.1468526290353 424.1842440240844 832.3310966531197 0 0 0 0 0 0 0 0 0 + D 0.57709 + + 2 + NaN NaN 100483.4 NaN 2796 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4678 31.283 NaN 31522 35 0 5161.5 0.261 + 10926 IYALWDYEP 9 22 585.279687978848 1168.5448230244958 2 585.2799682617188 MULTI HCD FTMS 0 0 0 4674 6373.919921875 0.4272865833499943 1 -0.026693344116210938 4 Unmodified _IYALWDYEP_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2 1.844237919475145 0.33703635659052655 1 Y[EP] 3 6 10.458 0 0 0.89492 0 0 761.3652210919937 0 761.3652210919937 0 10.45757490560675 0 0 0 0 0 0 0 + Y[EP] 0.89492 + + 1 NaN NaN 92017.7 NaN 2797 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4679 31.287 NaN 59744 35 0 11827 0.262 + 19265 NLLYPRAF 8 29 497.27910411160235 992.5436552900047 2 497.7816162109375 MULTI HCD FTMS 0 0 0 4674 7825.97802734375 0.7057502190002282 1 -0.026693344116210938 5 Unmodified _NLLYPRAF_ ENST00000531357.1_1_11:64889042-64889375:-|nuORF 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 7 5.4846 0 0 0.55258 0 0 138.47579747926096 704.0207003229124 842.4964978021733 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.55258 + + 2 + NaN NaN 95465.5 NaN 2798 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4680 31.29 NaN 23424 35 0 3421 0.261 + -1 CNEEDSGDKC 10 24 607.2097606147154 NaN 0 607.2099609375 PEAK HCD FTMS 0 0 0 4674 6107.00927734375 0.2653831859099592 -12 0.23720741271972656 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))NEEDSGDKC(Carbamidomethyl (C))_ REV__ENSG00000134569|ENST00000378623|LRP4;REV__ENSG00000145244|ENST00000273857|CORIN;REV__ENST00000503821.5_1_4:47663725-47840047:-|nuORF;REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96771.8 NaN 2799 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4681 31.293 NaN 11133 35 0 4480.6 0.261 + -1 LCFWCCFA 8 9 574.7195533449772 NaN 0 574.719970703125 PEAK HCD FTMS 0 0 0 4674 7287.83203125 0.6996368380488199 -2 0.04345512390136719 7 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))LCFWC(Carbamidomethyl (C))C(Carbamidomethyl (C))FA_ REV__ENST00000568774.5_1_16:1797122-1798792:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78414.6 NaN 2800 1879 4674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4683 31.299 NaN 98506 35 0 17283 0.327 -1 HPASDKIEAYM 11 35 426.5324521436301 1276.5755270310904 3 426.53240966796875 MULTI HCD FTMS 0 0 0 4682 41778.84375 0.8657533856258205 2 -0.04351234436035156 1 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 13.51866281300042 0.33929385944539686 1 Y{M(Oxidation (M))|F} 2 -1 23.583 0 0 1.8474 0 0 948.4648835758154 0 948.4648835758154 0 13.1259189508755 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 1.8474 + + 6 + NaN NaN 103680.9 NaN 2801 1880 4682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4684 31.303 NaN 37823 35 0 6026.3 0.261 -1 WVFMQPWIW 9 27 436.8790948210623 NaN 0 436.8791809082031 PEAK HCD FTMS 0 0 0 4682 17527.69921875 0.6439563404446467 24 -0.5367622375488281 2 Oxidation (M) _WVFM(Oxidation (M))QPWIW_ ENST00000456504.5_1_15:94841468-94841531:+|nuORF 0.235843874597859 0.29410397576755687 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81976.8 NaN 2802 1880 4682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4685 31.307 NaN 32668 35 0 5892.9 0.261 + -1 RGKTQIMEE 9 24 554.2767604637204 1106.5389679942407 2 555.2766723632812 MULTI HCD FTMS 0 0 0 4682 6444.974609375 0.4188110599838686 5 -0.10043907165527344 3 Oxidation (M) _RGKTQIM(Oxidation (M))EE_ REV__NOP14|p.E533Q|1|0.28|ENSG00000087269|chr4:2946450-2946450|C/G|missense_variant 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83192.5 NaN 2803 1880 4682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4686 31.31 NaN 11031 35 0 2406.7 0.261 -1 CGPQMLVFLR 10 11 618.8146362304688 NaN 0 618.8146362304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))GPQM(Oxidation (M))LVFLR_ ENSG00000112378|ENST00000421351|PERP 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81915.1 NaN 2804 1880 4682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4688 31.316 NaN 118480 35 0 28232 0.326 + 8777 HIEESEHVL 9 32 546.7700436744939 1091.5255344157877 2 546.7696533203125 MULTI HCD FTMS 0 0 0 4687 60435.1328125 0.6503799903128596 3 -0.06355857849121094 1 Unmodified _HIEESEHVL_ ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 34.10243960390752 0.09241788333544565 1 [H{I|L}]{[ES]|[DT]|[{I|L}C]}EEHV{I|L} 9 2 + 41.188 0 0 3.7735 3.7735 81.822 0 0 0 4.50582153349373 20.72559982972642 4.50582153349373 4.771212547196619 0 0.805462187404089 1.6989700043360187 0 0 [H{I|L}]{[ES]|[DT]|[{I|L}C]}EEHV{I|L};[H{I|L}]{[ES]|[DT]|[{I|L}C]}EEVH{I|L} 3.7735;3.3363 -;- 17 NaN NaN 87722.1 NaN 2805 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4689 31.32 NaN 151800 35 0 42384 0.261 + 18865 NAEPEPRSL 9 39 506.7565582977226 1011.4985636622453 2 506.7563781738281 MULTI HCD FTMS 0 0 0 4687 41722.61328125 0.0443064755534196 14 -0.2974090576171875 2 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 16.149105407346934 0.22083165093524068 1 {[QG]|[NA]}E 3 6 28.2 0 0 2.7879 0 0 0 694.3530920528291 694.3530920528291 20.981362441963327 0 0 0 0 1 0 0 0.7742275032520141 + {[QG]|[NA]}E 2.7879 + + 11 NaN NaN 105577.9 NaN 2806 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4690 31.323 NaN 82397 35 0 8603.3 0.261 -1 DTVTMQVTAR 10 37 569.2822734638709 1136.5499939945416 2 569.2818603515625 MULTI HCD FTMS 0 0 0 4687 44075.30859375 1 0 0 3 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 29.28111348798908 0.23842404446709042 1 {[ES]|[DT]|[{I|L}C]}VT{M(Oxidation (M))|F}QVTAR 10 -1 + 63.097 0 0 5.5516 5.5516 86.446 0 0 0 52.1277502416482 15.026975159433533 15.026975159433533 9.164539485499255 0 1.274227503252014 0 0 0 {[ES]|[DT]|[{I|L}C]}VT{M(Oxidation (M))|F}QVTAR;{[ES]|[DT]|[{I|L}C]}VT{M(Oxidation (M))|F}[AG]VTAR;{[ES]|[DT]|[{I|L}C]}VT[{I|L}A][CS]TAR;{[ES]|[DT]|[{I|L}C]}VT{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]}TAR 5.5516;4.7453;3.6713;3.4064 +;-;-;- + 99 + NaN NaN 98801.6 NaN 2807 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4691 31.327 NaN 72702 35 0 10771 0.261 + 9382 HPTDVDYRV 9 29 551.2698845001086 1100.525216067017 2 551.269775390625 MULTI HCD FTMS 0 0 0 4687 22938.330078125 0.07320343310679985 20 -0.449798583984375 4 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 15.847184025352803 0.2234401846867398 1 {I|L} 1 9 3.0989 0 0 0.28159 0 0 454.25429307387986 530.1621798150999 984.4164728889798 0 0 0 0 0 0 0 0 0 {I|L} 0.28159 - 2 + NaN NaN 90572.4 NaN 2808 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4692 31.33 NaN 44336 35 0 5697.3 0.261 + 31251 VVSLPSRTPP 10 26 526.8085989317378 1051.6026449302756 2 526.80810546875 MULTI HCD FTMS 0 0 0 4687 23934.466796875 0.1538023643182293 14 -0.2974090576171875 5 Unmodified _VVSLPSRTPP_ REV__ENSG00000127663|ENST00000159111|KDM4B;REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF;REV__nc|ENSG00000127663|O94953|KDM4B 3.5964929083625545 0.45626689593999237 1 A 1 -1 4.6041 0 0 0.43782 0 0 118.18005079140683 859.3571871393186 977.5372379307255 0 0 0 0 0 0 0 0 0 A 0.43782 - 16 + NaN NaN 85545.2 NaN 2809 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4693 31.333 NaN 19601 35 0 3609.4 0.261 + -1 MQTCLDACL 9 10 556.2323302336283 1110.4501075340565 2 556.232421875 MULTI HCD FTMS 0 0 0 4687 8446.6708984375 0.7510831555355253 1 -0.0267333984375 6 2 Carbamidomethyl (C) _MQTC(Carbamidomethyl (C))LDAC(Carbamidomethyl (C))L_ REV__ENSG00000165533|ENST00000380656|TTC8;REV__ENST00000556567.5_1_14:89291033-89307657:+|nuORF;REV__nc|ENSG00000165533|Q8TAM2-2|TTC8;REV__nc|ENSG00000165533|Q8TAM2-3|TTC8;REV__nc|ENSG00000165533|Q8TAM2-6|TTC8;REV__nc|ENSG00000165533|Q8TAM2|TTC8 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 77686.2 NaN 2810 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4694 31.337 NaN 139440 35 0 18670 0.264 + 20314 NYQKRFQNL 9 50 404.2157398407037 1209.625390122311 3 404.2152099609375 MULTI HCD FTMS 0 0 0 4687 21186.359375 0.09253777771529398 -7 0.147247314453125 7 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 8.745405648335112 0.2847203663274469 1 G 1 9 3.9794 0 0 0.32898 0 0 670.3600835810986 479.21808801822505 1149.5781715993237 0 0 0 0 0 0 0 0 0 G 0.32898 - 3 + NaN NaN 97550.7 NaN 2811 1881 4687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4696 31.342 NaN 211620 35 0 28101 0.327 -1 LPDDPAKTTM 10 54 552.7657894076201 1103.5170258820401 2 552.76611328125 MULTI HCD FTMS 0 0 0 4695 84635.6875 0.22660669208558093 -8 0.173980712890625 1 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 35.61225514009592 0.18348312004207498 1 {I|L}PDD 4 -1 55.165 0 0 4.999 0 0 0 660.3036114318962 660.3036114318962 28.17024086827658 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0 {I|L}PDD 4.999 + + 51 + NaN NaN 112793 NaN 2812 1882 4695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4697 31.347 NaN 52042 35 0 5351.5 0.261 + 27848 TDINNLRP 8 29 471.7537493019678 941.4929456707356 2 471.7533264160156 MULTI HCD FTMS 0 0 0 4695 5586.3017578125 0.49745778254564027 1 -0.013425827026367188 2 Unmodified _TDINNLRP_ REV__tr|U7T8N8|U7T8N8_FUSNUDUF2800domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00115PE=4SV=1 12.531546534597751 0.5015908124873912 1 {I|L} 1 -1 3.9794 0 0 0.42267 0 0 557.2912987974919 268.0931795709594 825.3844783684513 0 0 0 0 0 0 0 0 0 {I|L} 0.42267 + + 5 + NaN NaN 105488.6 NaN 2813 1882 4695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4698 31.35 NaN 14295 35 0 4394.4 0.261 + 20317 NYQKRFQNL 9 10 605.8200662743983 1209.6255796155965 2 605.8200073242188 MULTI HCD FTMS 0 0 0 4695 14371.8896484375 0.23025499124685217 -4 0.09357070922851562 3 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 2.498486711656943 0.33207666356665205 1 K 1 8 6.9897 0 0 0.57784 0 0 533.2587716095403 545.2468966119749 1078.5056682215152 0 0 0 0 0 0 0 0 0 + K 0.57784 + + 4 + NaN NaN 86813.6 NaN 2814 1882 4695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4700 31.356 NaN 223930 35 0 50001 0.326 + 31173 VVDPNDPQM 9 43 515.7291550478394 1029.4437571624787 2 515.7291259765625 MULTI HCD FTMS 0 0 0 4699 91515.5 0.7087345634176421 3 -0.07358551025390625 1 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 43.77239144664712 0.04802738721622131 1 VVDYY[QP]{M(Oxidation (M))|F} 8 3 VV + + 40.845 2.2185 1.1197 3.9677 3.9677 60.075 0 0 0 0 31.38112785045223 0 0 0 1.8252574989159953 0 0 1.2302046884880937 VVDYY[QP]{M(Oxidation (M))|F} 3.9677 - 42 + NaN NaN 116037.9 NaN 2815 1883 4699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4701 31.36 NaN 178980 35 0 21889 0.262 -1 MQPATFRCVL 10 47 408.2069467380789 NaN 0 408.21905517578125 PEAK HCD FTMS 0 0 0 4699 2151.536865234375 0.5442636681577566 2 -0.04350090026855469 2 Carbamidomethyl (C) _MQPATFRC(Carbamidomethyl (C))VL_ ENSG00000106819|ENST00000375544|ASPN 3.3196427980023873 0.3373431348853355 1 VE{I|L} 3 -1 18.5 0 0 2.2716 0 0 154.05429146466287 316.1417635553344 470.1960550199973 0 0 0 0 0 0.3807196863200844 0 0 0 VE{I|L} 2.2716 - 10 + NaN NaN 107748.6 NaN 2816 1883 4699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4702 31.364 NaN 134770 35 0 42435 0.261 + 26732 SYDRGQPI 8 33 468.23271317475945 934.4508734163189 2 468.2324523925781 MULTI HCD FTMS 0 0 0 4699 62467.62890625 0.811217700609033 -2 0.04015922546386719 3 Unmodified _SYDRGQPI_ ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037-3|KIF21B;nc|ENSG00000116852|O75037|KIF21B 16.942295170755138 0.46913822049235215 1 [QP][HS]E[QP]{I|L} 8 5 + 28.389 0 0 3.0381 3.0381 87.767 0 0 0 1.0822685886482475 28.389399919613965 1.0822685886482475 28.389399919613965 0 0.5 0 0.4247425010840047 0.4247425010840047 [QP][HS]E[QP]{I|L} 3.0381 - 11 NaN NaN 96027.9 NaN 2817 1883 4699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4703 31.367 NaN 28825 35 0 5351 0.261 + 21129 PPHHAPQASI 10 24 527.7744888537951 1053.5344247743901 2 527.7741088867188 MULTI HCD FTMS 0 0 0 4699 18991.857421875 0.7302410746115232 4 -0.08370018005371094 4 Unmodified _PPHHAPQASI_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant 1.844237919475145 0.46554186016084764 1 E 1 -1 6.9897 0 0 0.66345 0 0 134.1043233113026 787.3634737604124 921.467797071715 0 0 0 0 0 0 0 0 0 E 0.66345 - 4 + NaN NaN 88385.1 NaN 2818 1883 4699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4704 31.37 NaN 58059 35 0 17211 0.261 -1 MCTMCRFV 8 18 532.2127793986914 1062.4110058641827 2 532.212646484375 MULTI HCD FTMS 0 0 0 4699 14166.6904296875 0.33624251382640497 -8 0.1576709747314453 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TMCRFV_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|113|1|anti-sense 2.302733041254933 0.5385759549224092 1 W 1 -1 3.9794 0 0 0.37456 0 0 549.552864850314 323.7554110162719 873.308275866586 0 0 0 0 0 0 0 0 0 W 0.37456 - 1 + NaN NaN 86801.4 NaN 2819 1883 4699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4705 31.374 NaN 35596 35 0 10746 0.261 -1 CTGCCCCCCA 10 30 542.1208299845078 NaN 0 541.762451171875 PEAK HCD FTMS 0 0 0 4699 1921.7490234375 0.47391282647386046 -1 0.013425827026367188 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))TGC(Carbamidomethyl (C))CCCCCA_ ENST00000562592.5_1_16:57770947-57775680:+|nuORF 0 0.34018428902965525 1 D 1 -1 1.5938 0 0 0.14727 0 0 624.957375445775 339.23130212955317 964.1886775753283 0 0 0 0 0 0 0 0 0 D 0.14727 - 2 + NaN NaN 84679.3 NaN 2820 1883 4699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4707 31.379 NaN 66773 35 0 7191.6 0.327 + 17405 LYQVLAQAMC 10 34 570.282104528314 NaN 0 570.293701171875 PEAK HCD FTMS 0 0 0 4706 2338.6572265625 0.4656489848378273 1 -0.020101547241210938 1 Unmodified _LYQVLAQAMC_ REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2 3.2813086475875832 0.33737594360511275 1 ADQAE{I|L} 6 -1 21.146 0 0 1.8573 0 0 137.03575355502068 371.2042330377563 508.239986592777 0 0 0 0 0 0 0 0 0 ADQAE{I|L} 1.8573 - 47 + NaN NaN 87926.6 NaN 2821 1884 4706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4708 31.384 NaN 27190 35 0 3445.8 0.261 + -1 FRMDWCAM 8 29 566.7221035080923 1131.4296540829846 2 566.7219848632812 MULTI HCD FTMS 0 0 0 4706 9288.5517578125 0.4176790994216987 6 -0.1270465850830078 2 Carbamidomethyl (C),Oxidation (M) _FRMDWC(Carbamidomethyl (C))AM(Oxidation (M))_ REV__ENSG00000196455|ENST00000356763|PIK3R4;REV__ENST00000512362.5_1_3:130399450-130405229:-|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89352 NaN 2822 1884 4706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4709 31.387 NaN 24418 35 0 5146.3 0.262 + 20806 PHIGRDYLS 9 15 529.2751307487781 1056.5357085643561 2 529.2760620117188 MULTI HCD FTMS 0 0 0 4706 9890.333984375 0.43875116860792046 -10 0.21080589294433594 3 Unmodified _PHIGRDYLS_ REV__ENST00000393791.7_1_12:57872476-57873010:-|nuORF;REV__ENST00000552249.1_1_12:57872476-57873529:-|nuORF 3.944395688203298 0.32111559684428237 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q 3 -1 15.458 0 0 1.463 0 0 0 691.3328331583592 691.3328331583592 15.45757490560675 0 0 0 0 0.5 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q 1.463 - 8 NaN NaN 84588.3 NaN 2823 1884 4706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4710 31.39 NaN 67993 35 0 10929 0.261 + 126 AEASARPQL 9 31 471.7537493019678 941.4929456707356 2 471.7659606933594 MULTI HCD FTMS 0 0 0 4706 5666.4775390625 0.5045974015786994 3 -0.06030082702636719 4 Unmodified _AEASARPQL_ REV__ENSG00000090470|ENST00000204549|PDCD7 3.944395688203298 0.32111559684428237 1 {[CP]|[EA]}A{I|L} 4 -1 16.198 0 0 1.7204 0 0 0 554.2695319346606 554.2695319346606 16.197887582883936 0 0 0 0 0 0 0 0 {[CP]|[EA]}A{I|L} 1.7204 - 8 NaN NaN 87520.4 NaN 2824 1884 4706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4711 31.394 NaN 10856 35 0 3529.7 0.261 + 16313 LRDREAELQQ 10 10 629.3310460193744 NaN 0 629.33056640625 PEAK HCD FTMS 0 0 0 4706 5553.19287109375 0.8546814331280148 1 -0.020101547241210938 5 Unmodified _LRDREAELQQ_ ENSG00000107816|ENST00000454422|LZTS2 0.6268255596534771 0.33964781322640114 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87104.9 NaN 2825 1884 4706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4713 31.399 NaN 464430 35 0 149590 0.327 + 2071 DEPEARAAI 9 37 486.2433460183248 970.4721391034496 2 486.2431640625 MULTI HCD FTMS 0 0 0 4712 335982.34375 0.2999536375418847 7 -0.15044021606445312 1 Unmodified _DEPEARAAI_ AP1B1|p.M448I|1|0.3|ENSG00000100280|chr22:29349311-29349311|C/T|missense_variant 24.020572477871973 0.15282392193088168 1 [EP]EDRAAA{I|L} 9 3 + 79.875 0 0 8.2305 8.2305 96.045 0 0 0 19.621892823592972 74.39055965521284 19.621892823592972 35.27310937020445 0 0.9247425010840047 1.3979400086720375 0.805462187404089 0 [EP]EDRAAA{I|L};[EP]EDR{[NV]|[RG]}{I|L};[EP]ED[VG]{[NV]|[RG]}{I|L};[EP]ED[VG]A[RV] 8.2305;4.5959;3.6415;3.6415 -;-;-;- 64 NaN NaN 144323.7 NaN 2826 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4714 31.404 NaN 138560 35 0 15020 0.261 -1 MPSRPELSA 9 38 502.2475983716579 1002.4806438101158 2 502.2473449707031 MULTI HCD FTMS 0 0 0 4712 78935.2109375 0.9648314284426497 1 -0.030084609985351562 2 Oxidation (M) _M(Oxidation (M))PSRPELSA_ ENSG00000115963|ENST00000263895|RND3 37.07464296494664 0.07877380486334713 1 {M(Oxidation (M))|F}PNQ{I|L}N{I|L}SA 9 -1 + 38.286 0 0 3.8192 3.8192 85.23 0 0 0 7.044190852930832 1.5719030997733157 1.5719030997733157 9.208187539523756 0 1.5484550065040281 0 0.5 0 {M(Oxidation (M))|F}PNQ{I|L}N{I|L}SA;{M(Oxidation (M))|F}PGGQ{I|L}N{I|L}SA;{M(Oxidation (M))|F}PN[AG]{I|L}N{I|L}SA;[TP]C(Carbamidomethyl (C))Q{I|L}N{I|L}SA;[TP][CG]Q{I|L}N{I|L}SA;[TP]C(Carbamidomethyl (C))[AG]{I|L}N{I|L}SA;[C(Carbamidomethyl (C))Q][TP]{I|L}N{I|L}SA 3.8192;2.9006;2.9006;1.6764;0.75788;0.75788;0.18527 -;-;-;-;-;-;- 178 + NaN NaN 117362.5 NaN 2827 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4715 31.407 NaN 97083 35 0 9494.6 0.261 + 3379 EESDLSRQY 9 39 563.7542896496109 1125.4940263660217 2 563.7540283203125 MULTI HCD FTMS 0 0 0 4712 74850.46875 0.9561806188807563 1 -0.030084609985351562 3 Unmodified _EESDLSRQY_ ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 39.94969957227396 0.06557568441294001 1 QRD{[MS]|[{M(Oxidation (M))|F}A]}QY 7 5 44.469 0 0 3.951 0 0 199.0854944975967 0 199.0854944975967 0 39.86448853222001 0 0 0 0.8494850021680094 0 0 0.4247425010840047 QRD{[MS]|[{M(Oxidation (M))|F}A]}QY 3.951 - 111 + NaN NaN 96670.7 NaN 2828 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4716 31.41 NaN 181460 35 0 51970 0.261 -1 NADPQAVTM 9 30 481.71612515155437 961.4176973699088 2 481.71588134765625 MULTI HCD FTMS 0 0 0 4712 80464.34375 0.055925990506787156 -36 0.7253208160400391 4 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 AVT{M(Oxidation (M))|F} 4 -1 49.24 0 0 5.1216 0 0 525.2192249982437 0 525.2192249982437 0 34.63615337528019 0 0 0 1.7302046884880937 0 0 0 AVT{M(Oxidation (M))|F} 5.1216 + + 38 NaN NaN 109061.7 NaN 2829 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4717 31.414 NaN 81098 35 0 7929.1 0.261 + 9228 HPLSDHEATL 10 30 560.2751367728551 1118.5357206125102 2 560.275146484375 MULTI HCD FTMS 0 0 0 4712 42032.828125 0.007170701649363658 163 -4.0384674072265625 5 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 24.020572477871973 0.2864316864133941 1 HP{I|L} 3 7 23.416 0 0 2.0935 0 0 0 768.3167208307249 768.3167208307249 2.2184874961635614 0 0 0 0 0.5 0 0 0 + HP{I|L} 2.0935 + + 15 + NaN NaN 89564.6 NaN 2830 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4718 31.417 NaN 21827 35 0 4705.4 0.261 -1 HPASDKIEAYM 11 18 639.2953106677502 1276.5760684023003 2 639.797119140625 MULTI HCD FTMS 0 0 0 4712 11272.9267578125 0.8241281882958358 13 -0.2926959991455078 6 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.0860074813731053 0.4097721463192591 1 HPA 3 -1 23.812 0 0 1.8653 0 0 0 968.3994234674436 968.3994234674436 23.812281309285623 0 0 0 0 0 0 0 0 HPA 1.8653 + + 3 + NaN NaN 90207.1 NaN 2831 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4719 31.42 NaN 23572 35 0 5996 0.261 + 35305 YWKFHFQN 8 16 585.279687978848 1168.5448230244958 2 585.2660522460938 MULTI HCD FTMS 0 0 0 4712 5642.39013671875 0.3782472376491747 7 -0.15044021606445312 7 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86155.3 NaN 2832 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4720 31.424 NaN 14570 35 0 4119 0.261 -1 SYSLCIIPLL 10 13 589.8300987181285 NaN 0 589.83056640625 PEAK HCD FTMS 0 0 0 4712 4323.49267578125 0.5007856347664226 -15 0.28435516357421875 8 Carbamidomethyl (C) _SYSLC(Carbamidomethyl (C))IIPLL_ ENST00000518975.1_1_8:17566427-17579410:-|nuORF;nc|ENSG00000129422|Q9ULD2-6|MTUS1 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74231.5 NaN 2833 1885 4712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4722 31.429 NaN 32085 35 0 4626.6 0.327 + 9058 HPETRSAFL 9 25 529.2751307487781 1056.5357085643561 2 529.2747192382812 MULTI HCD FTMS 0 0 0 4721 13821.4296875 0.6131409148369668 -8 0.18058204650878906 1 Unmodified _HPETRSAFL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 2.9952420565917617 0.3283108881486655 1 HPE 3 6 26.198 0 0 2.4796 0 0 0 690.3565767877561 690.3565767877561 26.197887582883936 0 0 0 0 0 0 0 0 + HPE 2.4796 + + 3 + NaN NaN 92280.8 NaN 2834 1886 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4723 31.434 NaN 45816 35 0 8761.5 0.261 + -1 KMEWWKKMW 9 35 456.8920936554535 1367.6544515665605 3 456.8919677734375 MULTI HCD FTMS 0 0 0 4721 1376.9822998046875 0.17733823526914877 -2 0.0501861572265625 2 Oxidation (M) _KMEWWKKM(Oxidation (M))W_ REV__ENSG00000130234|ENST00000252519|ACE2;REV__nc|ENSG00000130234|Q9BYF1-3|ACE2 0.9622753412299311 0.3437222896773173 1 C(Carbamidomethyl (C)) 1 -1 3.4949 0 0 0.25554 0 0 769.4151460019106 435.1848543756469 1204.6000003775575 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.25554 - 2 + NaN NaN 86794.6 NaN 2835 1886 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4725 31.439 NaN 195300 35 0 33480 0.327 + 4334 EVVEQGITR 9 45 515.7808772014351 NaN 0 515.7984008789062 PEAK HCD FTMS 0 0 0 4724 11678.375 0.6898758683836584 -1 0.010114669799804688 1 Unmodified _EVVEQGITR_ ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3 10.799506525563784 0.2429139407627568 1 VEQ 3 6 10.802 0 0 1.0492 0 0 228.1118628615098 442.2417391412719 670.3536020027817 0 0 0 0 0 0 0 0 0 + VEQ 1.0492 + + 39 + NaN NaN 113767 NaN 2836 1887 4724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4726 31.444 NaN 55742 35 0 4844.5 0.261 + 9274 HPNDDDVHF 9 34 548.228302940141 1094.442052947082 2 548.2279663085938 MULTI HCD FTMS 0 0 0 4724 21261.955078125 0.0731856126241318 34 -0.8260269165039062 2 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 22.736283301280096 0.1639198954644489 1 VH{M(Oxidation (M))|F} 3 6 26.682 0 0 2.438 0 0 693.2359486310562 0 693.2359486310562 0 21.04757507271316 0 0 0 0.5 0 0 0 + VH{M(Oxidation (M))|F} 2.438 + + 20 NaN NaN 91865.4 NaN 2837 1887 4724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4727 31.447 NaN 55684 35 0 7017.5 0.261 + 18628 MYDDIAHS 8 32 476.1984329560208 NaN 0 476.1980895996094 PEAK HCD FTMS 0 0 0 4724 17063.4609375 0.7283335473081688 7 -0.14682388305664062 3 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 DD 2 6 3.9794 0 0 0.41872 0 0 426.2213155196603 291.0730074518188 717.2943229714791 0 0 0 0 0 0 0 0 0 + DD 0.41872 + + 8 + NaN NaN 83072 NaN 2838 1887 4724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4728 31.45 NaN 36325 35 0 7824.9 0.261 + -1 SKRKLTTC 8 15 497.27910411160235 992.5436552900047 2 497.2785339355469 MULTI HCD FTMS 0 0 0 4724 3470.172607421875 0.27357123786275095 5 -0.11024093627929688 4 Carbamidomethyl (C) _SKRKLTTC(Carbamidomethyl (C))_ REV__ARHGEF17|p.S1326F|1|0.09|ENSG00000110237|chr11:73357110-73357110|C/T|missense_variant;REV__ENSG00000110237|ENST00000263674|ARHGEF17 0.7936320650641473 0.540814922690045 1 T 1 -1 6.9897 0 0 0.70422 0 0 394.75460607301096 493.72873865299067 888.4833447260016 0 0 0 0 0 0 0 0 0 T 0.70422 + + 1 + NaN NaN 80763.6 NaN 2839 1887 4724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4729 31.454 NaN 13333 35 0 3721.3 0.261 + 33358 YGGETNSCGYN 11 14 582.7168469587289 1163.4191409842576 2 582.717041015625 MULTI HCD FTMS 0 0 0 4724 3781.3564453125 0.34256713932287564 6 -0.12034988403320312 5 Unmodified _YGGETNSCGYN_ REV__ENSG00000138829|ENST00000262464|FBN2 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84750.4 NaN 2840 1887 4724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4731 31.459 NaN 70556 35 0 9486.2 0.327 -1 HPASDKIEAYM 11 28 426.5324521436301 1276.5755270310904 3 426.5324401855469 MULTI HCD FTMS 0 0 0 4730 28741.505859375 0.595589867317433 10 -0.23263931274414062 1 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 13.51866281300042 0.33929385944539686 1 AY{M(Oxidation (M))|F} 3 -1 32.703 0 0 2.5618 0 0 877.4285981754248 0 877.4285981754248 0 28.098943791441968 0 0 0 1 0 0 0 AY{M(Oxidation (M))|F} 2.5618 + + 10 + NaN NaN 89428.3 NaN 2841 1888 4730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4732 31.464 NaN 57443 35 0 4374.9 0.261 -1 RLMMEHVF 8 34 547.7604136517594 1093.5062743703188 2 548.7655029296875 MULTI HCD FTMS 0 0 0 4730 18344.994140625 0.6046645755480753 -1 0.019857406616210938 2 2 Oxidation (M) _RLM(Oxidation (M))M(Oxidation (M))EHVF_ NOM1|p.L424F|1|0.2|ENSG00000146909|chr7:156954260-156954260|C/T|missense_variant 2.577480529830294 0.5381683276125971 1 Q 1 -1 6.9897 0 0 0.6392 0 0 692.3003855537157 270.1279696100219 962.4283551637377 0 0 0 0 0 0 0 0 0 Q 0.6392 - 5 + NaN NaN 89130.5 NaN 2842 1888 4730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4733 31.467 NaN 55667 35 0 12774 0.261 -1 LPDDPRQM 8 22 494.2318455542109 986.4491381752218 2 494.231689453125 MULTI HCD FTMS 0 0 0 4730 17432.501953125 0.28530180466770966 -10 0.2105541229248047 3 Oxidation (M) _LPDDPRQM(Oxidation (M))_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 6.723162845929126 0.5320176132289695 1 {I|L}P 2 -1 19.464 0 0 1.9731 0 0 0 773.2887056940061 773.2887056940061 19.463950151760656 0 0 0 0 0 0 0 0 {I|L}P 1.9731 + + 1 + NaN NaN 91427.9 NaN 2843 1888 4730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4734 31.471 NaN 19398 35 0 4075.8 0.261 + 30268 VKHEKEAVI 9 15 526.8085989317378 1051.6026449302756 2 526.80810546875 MULTI HCD FTMS 0 0 0 4730 7620.51513671875 0.048969264922301387 21 -0.4896965026855469 4 Unmodified _VKHEKEAVI_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95626.7 NaN 2844 1888 4730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4735 31.474 NaN 22979 35 0 5153.1 0.261 + 17681 MAFVTRQFM 9 12 565.7791236322743 1129.5436943313484 2 565.7792358398438 MULTI HCD FTMS 0 0 0 4730 17943.404296875 1 0 0 5 Unmodified _MAFVTRQFM_ ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-2|HADH;nc|ENSG00000138796|Q16836-3|HADH 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82684.3 NaN 2845 1888 4730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4736 31.477 NaN 36733 35 0 8637.5 0.261 + 7489 FWDLAQQL 8 26 510.7609593880948 1019.5073658429897 2 510.7601013183594 MULTI HCD FTMS 0 0 0 4730 6834.6826171875 0.4397363007830817 10 -0.23263931274414062 6 Unmodified _FWDLAQQL_ REV__ENSG00000176920|ENST00000425340|FUT2;REV__FUT2|p.R221Q|1|0.19|ENSG00000176920|chr19:48703618-48703618|G/A|missense_variant 2.0597508629832335 0.5389364538378849 1 V{I|L} 2 -1 20.969 0 0 2.0568 0 0 789.3379994123062 0 789.3379994123062 0 15.484550065040281 0 0 0 0 0 0 0 V{I|L} 2.0568 - 2 NaN NaN 82455.6 NaN 2846 1888 4730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4738 31.483 NaN 710820 35 0 111530 0.327 + 15349 LPDDPAKTTM 10 64 552.7657894076201 1103.5170258820401 2 552.7658081054688 MULTI HCD FTMS 0 0 0 4737 344993 0.923696904130197 -1 0.023395538330078125 1 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 114.4966697963812 4.563610280778346E-05 1 {I|L}PDDPAKTT{M(Oxidation (M))|F} 10 0 + 106.15 0 0 9.6193 9.6193 96.654 0 0 0 81.37394998465425 10.764837301042718 10.764837301042718 20.945691854836014 0 2.8979400086720375 1.5228787452803376 1.829689690656103 0 + + {I|L}PDDPAKTT{M(Oxidation (M))|F};[{I|L}P]DDPAKTT{M(Oxidation (M))|F};{I|L}PDD[Q{I|L}][VG]T{M(Oxidation (M))|F};[{I|L}P]DS[PG]G{I|L}TT{M(Oxidation (M))|F};[DP]{I|L}DPAKTT{M(Oxidation (M))|F};[DP]D{I|L}PAKTT{M(Oxidation (M))|F};[{I|L}P]DS[NP]{I|L}TT{M(Oxidation (M))|F};[DP]{I|L}S[PG]G{I|L}TT{M(Oxidation (M))|F};[DP]{I|L}S[NP]{I|L}TT{M(Oxidation (M))|F};[{I|L}P]DS[PG]G{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 9.6193;7.7212;7.4024;6.2163;6.1609;5.7189;5.6204;4.656;4.0601;3.719 +;+;-;-;-;-;-;-;-;- + 1032 + NaN NaN 188420.6 NaN 2847 1889 4737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4739 31.487 NaN 469890 35 0 79032 0.264 + 20315 NYQKRFQNL 9 57 404.2157398407037 1209.625390122311 3 404.2157287597656 MULTI HCD FTMS 0 0 0 4737 202764.84375 0.8856362580894724 1 -0.023492813110351562 2 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 20.41453444215458 0.18397929046831515 1 NY 2 7 38.227 0 0 3.1602 0 0 0 929.4957821163559 929.4957821163559 19.643331241078172 0 0 0 0 0.4247425010840047 2 0 0 + NY 3.1602 + + 26 + NaN NaN 148479.2 NaN 2848 1889 4737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4740 31.491 NaN 284000 35 0 90485 0.261 + 24304 RYGDGGSTF 9 27 480.21475031866044 958.4149477041209 2 480.2143859863281 MULTI HCD FTMS 0 0 0 4737 133150.203125 0.7410169785117057 -1 0.023395538330078125 3 Unmodified _RYGDGGSTF_ ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 26.268140514670165 0.13340543277302316 1 NST{M(Oxidation (M))|F} 4 6 48.928 0 0 5.1051 0 0 491.21357924629064 0 491.21357924629064 0 39.463950151760656 0 0 0 1 0 0.8494850021680094 0 NST{M(Oxidation (M))|F} 5.1051 - 39 NaN NaN 131292.5 NaN 2849 1889 4737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4741 31.494 NaN 66730 35 0 7599.7 0.261 + 20318 NYQKRFQNL 9 40 605.8200662743983 1209.6255796155965 2 605.8199462890625 MULTI HCD FTMS 0 0 0 4737 55535.73046875 0.8897493263427475 3 -0.06698799133300781 4 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 47.594388314883695 0.03493607795751234 1 [YN]QK 4 5 49.253 0 0 4.0717 0 0 0 673.3432100885374 673.3432100885374 27.74227503252014 0 0 0 0 0.9247425010840047 2 0 0.3807196863200844 + [YN]QK 4.0717 + + 47 + NaN NaN 94453.7 NaN 2850 1889 4737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4742 31.497 NaN 251200 35 0 46423 0.261 + 8713 HGYDKDPVL 9 55 522.2618098358441 1042.5090667384882 2 522.2610473632812 MULTI HCD FTMS 0 0 0 4737 86202.234375 0.3617170387597875 -3 0.05336761474609375 5 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 49.52724829834842 0.03223213920720493 1 {[HG]|PP}YDKDVP{I|L} 9 2 + 63.387 0 0 6.0803 6.0803 83.999 0 0 0 5.6424927368725974 39.83078780285204 5.6424927368725974 1.7339374311232802 0 1.5356668758921828 0 1.1989700043360187 0 {[HG]|PP}YDKDVP{I|L};{[HG]|PP}YDKDPV{I|L};{[HG]|PP}YDKD{I|L}[VP];{[HG]|PP}YD[QP][{I|L}T]{I|L} 6.0803;5.9139;3.7801;2.6269 -;+;-;- + 125 NaN NaN 120569 NaN 2851 1889 4737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4743 31.501 NaN 51478 35 0 6253.6 0.261 + 8485 HADQAEIRSL 10 32 570.2938518458501 1138.5731507585 2 570.2936401367188 MULTI HCD FTMS 0 0 0 4737 22428.630859375 0.022950926528824363 41 -0.9994220733642578 6 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 17.86316937532769 0.34402595751606074 1 HADQAE{I|L} 7 3 53.704 0 0 4.7168 0 0 0 371.20490442447505 371.20490442447505 53.703745000939165 0 0 0 0 0.9247425010840047 0 0 0 + HADQAE{I|L} 4.7168 + + 43 + NaN NaN 90139.9 NaN 2852 1889 4737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4745 31.506 NaN 73560 35 0 22552 0.327 + 8150 GPHASEPQL 9 21 468.23271317475945 934.4508734163189 2 468.23260498046875 MULTI HCD FTMS 0 0 0 4744 32637.59765625 0.4238386727282504 5 -0.10680389404296875 1 Unmodified _GPHASEPQL_ ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4 10.073929032068715 0.27331982688540024 1 EPQ{I|L} 4 5 33.047 0 0 3.5366 0 0 449.2164478986344 0 449.2164478986344 0 33.047444008242906 0 0 0 0.5 0 0 0 + EPQ{I|L} 3.5366 + + 13 NaN NaN 88746.4 NaN 2853 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4746 31.511 NaN 106990 35 0 11521 0.261 + 34827 YRINTDAQEL 10 49 408.2069467380789 NaN 0 408.21881103515625 PEAK HCD FTMS 0 0 0 4744 2661.463134765625 0.6732572013059075 8 -0.18575096130371094 2 Unmodified _YRINTDAQEL_ nc|ENSG00000075539|O94915-2|FRYL 3.3196427980023873 0.3373431348853355 1 VE{I|L} 3 8 8.6721 0 0 1.0649 0 0 154.0565707809639 316.1410006158813 470.1975713968452 0 0 0 0 0 0 0 0 0 VE{I|L} 1.0649 - 17 + NaN NaN 103816.5 NaN 2854 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4747 31.514 NaN 108070 35 0 20609 0.261 -1 MCTMCRFV 8 29 532.2127793986914 1062.4110058641827 2 532.212646484375 MULTI HCD FTMS 0 0 0 4744 39937.47265625 0.9479049654159084 -1 0.023492813110351562 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TMCRFV_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|113|1|anti-sense 2.302733041254933 0.5385759549224092 1 VEEAVA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8 -1 33.726 0 0 3.1745 0 0 188.9568565495327 0 188.9568565495327 0 24.12228653445139 0 0 0 0.28872548999643577 0 0.3494850021680094 0 VEEAVA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.1745 - 63 + NaN NaN 87207.9 NaN 2855 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4748 31.517 NaN 88051 35 0 16439 0.261 + 18866 NAEPEPRSL 9 34 506.7565582977226 1011.4985636622453 2 506.75653076171875 MULTI HCD FTMS 0 0 0 4744 17368.646484375 0.018444278781592487 23 -0.539398193359375 4 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 11.494710602746466 0.2610445893512368 1 {[QG]|[NA]}E 3 6 22.76 0 0 2.2501 0 0 0 694.3525119867171 694.3525119867171 22.759621790487685 0 0 0 0 1 0 0 0.3807196863200844 + {[QG]|[NA]}E 2.2501 + + 4 NaN NaN 85902.3 NaN 2856 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4749 31.521 NaN 20026 35 0 5475.6 0.261 -1 AFHCMSLTE 9 8 556.2323302336283 1110.4501075340565 2 556.2316284179688 MULTI HCD FTMS 0 0 0 4744 6086.462890625 0.5412120122717393 10 -0.23916053771972656 5 Carbamidomethyl (C),Oxidation (M) _AFHC(Carbamidomethyl (C))M(Oxidation (M))SLTE_ ENST00000463488.1_1_9:133569202-133574940:+|nuORF;ENST00000490641.5_1_9:133570956-133574940:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77276.2 NaN 2857 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4750 31.524 NaN 47827 35 0 5889.1 0.261 -1 ACCEYMKL 8 32 509.21485479297655 NaN 0 509.21551513671875 PEAK HCD FTMS 0 0 0 4744 6954.1826171875 0.5304449189913306 21 -0.482757568359375 6 Carbamidomethyl (C) _AC(Carbamidomethyl (C))CEYMKL_ ENSG00000145332|ENST00000273963|KLHL8;nc|ENSG00000145332|Q9P2G9-2|KLHL8 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84164.4 NaN 2858 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4751 31.527 NaN 22931 35 0 3924.6 0.261 -1 HPTDVDYRVM 10 23 624.7877388852504 1247.5609248373007 2 625.287841796875 MULTI HCD FTMS 0 0 0 4744 7082.90771484375 0.302963364432108 -13 0.27753257751464844 7 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92756.9 NaN 2859 1890 4744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4753 31.533 NaN 170820 35 0 27187 0.326 + 18434 MPVHAAVQM 9 51 500.2420140757035 998.469475218207 2 500.24114990234375 MULTI HCD FTMS 0 0 0 4752 101434.4375 0.5838630560559633 -3 0.07361412048339844 1 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 77.98433622928108 0.006504613272346738 1 M[VP]HAAVQ{M(Oxidation (M))|F} 9 0 + 63.567 0 0 6.3664 6.3664 90.761 0 0 0 53.9625938194564 4.633702839612184 4.633702839612184 14.660677999045717 0 2.6677353201839438 0 0 0.8807196863200843 + + M[VP]HAAVQ{M(Oxidation (M))|F};M[VP]H[Q{I|L}]Q{M(Oxidation (M))|F} 6.3664;4.8981 +;- + 118 + NaN NaN 109251.7 NaN 2860 1891 4752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4754 31.537 NaN 55058 35 0 10323 0.261 + 3005 EAALGPEKK 9 28 471.7663209592429 941.5180889852858 2 471.7662353515625 MULTI HCD FTMS 0 0 0 4752 32019.251953125 0.6032038816732818 3 -0.05335235595703125 2 Unmodified _EAALGPEKK_ REV__ENSG00000182013|ENST00000313683|PNMA8A;REV__nc|ENSG00000182013|Q86V59-2|PNMA8A 8.745405648335112 0.2847203663274469 1 {[CP]|[EA]}A{I|L} 4 -1 26.198 0 0 2.7825 0 0 0 554.2945150778759 554.2945150778759 26.197887582883936 0 0 0 0 1 0 0 0 {[CP]|[EA]}A{I|L} 2.7825 + + 6 NaN NaN 90205.3 NaN 2861 1891 4752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4755 31.541 NaN 56122 35 0 6495.3 0.261 + -1 HADALDMVHI 10 33 569.2723002868802 1136.5300476405603 2 570.2939453125 MULTI HCD FTMS 0 0 0 4752 4414.6904296875 1 0 0 3 Oxidation (M) _HADALDM(Oxidation (M))VHI_ REV__tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1 3.944395688203298 0.4544253912184634 1 [HA]D 3 -1 13.952 0 0 1.2276 0 0 0 810.3861321955009 810.3861321955009 2.983324797206281 0 0 0 0 0 0 0.5 0 [HA]D 1.2276 + + 11 NaN NaN 106505 NaN 2862 1891 4752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4756 31.544 NaN 16553 35 0 3812.9 0.261 + -1 CMESWVRKR 9 15 634.3051258187342 NaN 0 634.3046264648438 PEAK HCD FTMS 0 0 0 4752 3944.459228515625 0.6936081686251455 1 -0.0167694091796875 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))ESWVRKR_ REV__ENST00000449707.5_1_2:219502991-219503057:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89698.7 NaN 2863 1891 4752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4758 31.55 NaN 121330 35 0 36374 0.327 + -1 IALHCCAAL 9 22 486.2433460183248 970.4721391034496 2 486.2431335449219 MULTI HCD FTMS 0 0 0 4757 78807.5625 0.070356718075857 14 -0.33925819396972656 1 Carbamidomethyl (C) _IALHC(Carbamidomethyl (C))CAAL_ REV__ENSG00000150627|ENST00000508596|WDR17;REV__nc|ENSG00000150627|Q8IZU2|WDR17 9.347437153973935 0.2795965555214564 1 AA{I|L} 3 -1 31.198 0 0 3.2147 0 0 697.304002830275 0 697.304002830275 0 31.197887582883936 0 0 0 0.5 0 0 0 AA{I|L} 3.2147 + + 18 NaN NaN 100215 NaN 2864 1892 4757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4759 31.554 NaN 20507 35 0 3587.3 0.261 -1 0 23 639.2953106677502 1276.5760684023003 2 639.2957763671875 MULTI HCD FTMS 0 0 0 4757 10656.89453125 0.4638657985464944 17 -0.39931297302246094 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91255.4 NaN 2865 1892 4757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4761 31.559 NaN 160160 35 0 43139 0.327 + 4330 EVTRILDGK 9 40 515.7983529380926 1029.5821529429852 2 515.7982177734375 MULTI HCD FTMS 0 0 0 4760 83149.234375 0.703254538039607 2 -0.05319976806640625 1 Unmodified _EVTRILDGK_ ENSG00000142669|ENST00000270792|SH3BGRL3 42.312485326615175 0.05472917415473307 1 [KG]D[KG]{I|L}{I|L}DGK 10 5 + 42.317 0 0 4.1101 4.1101 80.435 0 0 0 2.6638000898875447 22.85335007137462 2.6638000898875447 0.9691001300805624 0 1 0 0.8494850021680094 0 [KG]D[KG]{I|L}{I|L}DGK;[KG]DV[KA]{I|L}DGK;[VS]N[KG]{I|L}{I|L}DGK;[VS]NV[KA]{I|L}DGK;[VS]GG[KG]{I|L}{I|L}DGK;[VS]GGV[KA]{I|L}DGK;[KG][{I|L}V][NS]{I|L}DGK 4.1101;4.016;3.8178;3.7236;2.9276;2.8335;2.824 -;-;-;-;-;-;- 214 NaN NaN 107165.8 NaN 2866 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4762 31.564 NaN 61564 35 0 7039.5 0.261 + 18054 MLTNMRMIQ 9 34 569.2822734638709 1136.5499939945416 2 569.2726440429688 MULTI HCD FTMS 0 0 0 4760 1863.006103515625 0.0422687024312702 11 -0.2757740020751953 2 Unmodified _MLTNMRMIQ_ ENST00000382093.5_1_2:3517710-3517743:-|nuORF 6.723162845929126 0.3000504726104499 1 TVS 3 8 12.167 0 0 1.0705 0 0 459.2140697775479 387.16388879947505 846.3779585770229 0 0 0 0 0 0.5 0 0 0 TVS 1.0705 - 13 + NaN NaN 98675.3 NaN 2867 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4763 31.567 NaN 76555 35 0 10183 0.261 + 9229 HPLSDHEATL 10 29 560.2751367728551 1118.5357206125102 2 560.2749633789062 MULTI HCD FTMS 0 0 0 4760 31347.232421875 0.005347764146682076 171 -4.304908752441406 3 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 19.256988751693697 0.33098864134661865 1 T{I|L} 2 8 21.454 0 0 1.918 0 0 886.3925135485498 0 886.3925135485498 0 3.4948500216800937 0 0 0 0 0 0.5 0 + T{I|L} 1.918 + + 4 NaN NaN 115717.6 NaN 2868 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4764 31.571 NaN 27405 35 0 4208 0.261 + 18378 MPNKQPESSL 10 19 565.7791236322743 1129.5436943313484 2 565.7777709960938 MULTI HCD FTMS 0 0 0 4760 10277.6337890625 0.5727805949761963 5 -0.13214683532714844 4 Unmodified _MPNKQPESSL_ ENSG00000170385|ENST00000367001|SLC30A1 2.9952420565917617 0.4594494122822477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87278.8 NaN 2869 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4765 31.574 NaN 46589 35 0 5659.5 0.261 + 9323 HPRDSAVYI 9 28 529.2751307487781 1056.5357085643561 2 529.2747802734375 MULTI HCD FTMS 0 0 0 4760 16710.990234375 0.7413264815435762 -1 0.01010894775390625 5 Unmodified _HPRDSAVYI_ nc|ENSG00000211820|A0A0B4J266|TRAV41 5.731851221503515 0.3075653528928475 1 HPE 3 7 26.198 0 0 2.4796 0 0 0 690.3567598932249 690.3567598932249 14.631068929195406 0 0 0 0 0 0 0 0 HPE 2.4796 - 8 + NaN NaN 85994.7 NaN 2870 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4766 31.577 NaN 18642 35 0 6310.1 0.261 -1 SRMQSTYNY 9 15 583.2508548750831 1164.487156816966 2 583.2509765625 MULTI HCD FTMS 0 0 0 4760 5395.00146484375 0.4672704085020239 1 -0.0264739990234375 6 Oxidation (M) _SRM(Oxidation (M))QSTYNY_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78094.4 NaN 2871 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4767 31.581 NaN 17393 35 0 2607.2 0.261 -1 VYRECRTW 8 18 585.279687978848 1168.5448230244958 2 585.267578125 MULTI HCD FTMS 0 0 0 4760 2874.73828125 0.19271297934025672 14 -0.3491706848144531 7 Carbamidomethyl (C) _VYREC(Carbamidomethyl (C))RTW_ ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3 0.6903765706972694 0.5409681170271811 1 [RV]Y 3 -1 10.458 0 0 0.89492 0 0 0 747.2933636341239 747.2933636341239 10.45757490560675 0 0 0 0 0 0 0 0 [RV]Y 0.89492 - 4 NaN NaN 89503.6 NaN 2872 1893 4760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4769 31.586 NaN 415520 35 0 35923 0.327 + 22372 QPQQVIHGEKL 11 71 426.23836410715313 1275.6932629216594 3 426.23834228515625 MULTI HCD FTMS 0 0 0 4768 145146.125 0.21592761582825895 -4 0.080078125 1 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 22.48609341952514 0.2611603425612102 1 [QP]QQV{I|L}H 7 4 42.083 0 0 3.2988 0 0 0 442.23042983489853 442.23042983489853 12.808035367406415 0 0 0 0 0.3494850021680094 0 0 0.9247425010840047 + [QP]QQV{I|L}H 3.2988 + + 134 + NaN NaN 144482.8 NaN 2873 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4770 31.591 NaN 59754 35 0 12112 0.261 + 26470 STVEEAVATR 10 27 531.7749099717494 1061.5352670102986 2 531.7748413085938 MULTI HCD FTMS 0 0 0 4768 18407.673828125 0.4363881101587313 1 -0.02672576904296875 2 Unmodified _STVEEAVATR_ ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1 14.218169984304629 0.37812005199054677 1 {[MG]|[TS]}VEEAVA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 38.421 0 0 3.6194 3.6194 87.082 0 0 0 38.42145952513228 5.764837301042718 5.764837301042718 17.501225267834 0 0.3807196863200844 0 0 0 + + {[MG]|[TS]}VEEAVA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[MG]|[TS]}VEE[Q{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.6194;1.9708 +;- + 44 + NaN NaN 82919.9 NaN 2874 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4771 31.594 NaN 30605 35 0 4167.7 0.261 -1 MVLTEMPHH 9 23 563.7542896496109 1125.4940263660217 2 563.7544555664062 MULTI HCD FTMS 0 0 0 4768 11400.5927734375 0.145637375901042 10 -0.2493000030517578 3 2 Oxidation (M) _M(Oxidation (M))VLTEM(Oxidation (M))PHH_ ENSG00000089154|ENST00000300648|GCN1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82550.2 NaN 2875 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4772 31.597 NaN 56270 35 0 7859.8 0.262 + 18629 MYDDIAHS 8 35 476.1984329560208 NaN 0 476.1990966796875 PEAK HCD FTMS 0 0 0 4768 14546.4853515625 0.6208994362735699 14 -0.34272003173828125 4 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 3.9794 0 0 0.41872 0 0 408.1490498946603 424.18317590885005 832.3322258035104 0 0 0 0 0 0 0 0 0 + D 0.41872 + + 4 + NaN NaN 89927.1 NaN 2876 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4773 31.601 NaN 33574 35 0 6795.2 0.261 + 18622 MWYPHFVI 8 18 546.7700436744939 1091.5255344157877 2 546.7694702148438 MULTI HCD FTMS 0 0 0 4768 11211.970703125 0.12065897860951282 16 -0.3827018737792969 5 Unmodified _MWYPHFVI_ REV__ENSG00000092439|ENST00000646667|TRPM7 2.8892196856762586 0.5377058178582064 1 V{I|L} 2 -1 20.969 0 0 1.9211 0 0 861.3592087699933 0 861.3592087699933 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.9211 + + 1 NaN NaN 83701.8 NaN 2877 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4774 31.604 NaN 36503 35 0 8339 0.261 -1 LSCCTVCHWD 10 17 640.7458581386126 1279.477163344025 2 640.7459716796875 MULTI HCD FTMS 0 0 0 4768 16447.158203125 1 0 0 6 2 Carbamidomethyl (C) _LSC(Carbamidomethyl (C))C(Carbamidomethyl (C))TVCHWD_ nc|ENSG00000156170|Q330K2-3|NDUFAF6 0.45834013312273997 0.47287763746706196 1 C 1 -1 5.4846 0 0 0.42866 0 0 597.2391395176563 576.2058809869749 1173.4450205046312 0 0 0 0 0 0 0 0 0 C 0.42866 + + 1 + NaN NaN 81931.8 NaN 2878 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4775 31.607 NaN 38476 35 0 7729.3 0.262 + -1 NVCRVRQR 8 19 544.2974053418251 1086.58025775045 2 544.29638671875 MULTI HCD FTMS 0 0 0 4768 10994.7626953125 1 0 0 7 Carbamidomethyl (C) _NVC(Carbamidomethyl (C))RVRQR_ REV__ENSG00000187855|ENST00000342331|ASCL4 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 79378 NaN 2879 1894 4768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4777 31.613 NaN 112660 35 0 25154 0.327 -1 LPDDPRQM 8 32 494.2318455542109 986.4491381752218 2 494.2316589355469 MULTI HCD FTMS 0 0 0 4776 35084.0234375 0.5741881015495102 -3 0.0633087158203125 1 Oxidation (M) _LPDDPRQM(Oxidation (M))_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 9.38312468134398 0.524755689532147 1 {I|L}PDD 4 -1 36.938 0 0 3.7446 0 0 0 543.235820199275 543.235820199275 29.948500216800937 0 0 0 0 0.5 0 0 0 {I|L}PDD 3.7446 + + 8 + NaN NaN 99495.9 NaN 2880 1895 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4778 31.617 NaN 57670 35 0 5363.1 0.261 + 19679 NWDDYKKQ 8 38 548.7541056074892 NaN 0 548.76611328125 PEAK HCD FTMS 0 0 0 4776 2312.927490234375 0.4558015331961563 1 -0.023418426513671875 2 Unmodified _NWDDYKKQ_ ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF;nc|ENSG00000115159|P43304-2|GPD2 2.302733041254933 0.38822285293237185 1 HV 2 8 9.464 0 0 0.8639 0 0 184.13980424502353 672.2030123346311 856.3428165796547 0 0 0 0 0 0 0 0 0 HV 0.8639 - 4 + NaN NaN 89280.8 NaN 2881 1895 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4779 31.621 NaN 24916 35 0 5262.2 0.261 + 3552 EISLHIVKN 9 22 526.8085989317378 1051.6026449302756 2 526.8082275390625 MULTI HCD FTMS 0 0 0 4776 7528.87158203125 0.04838036542831706 28 -0.7058296203613281 3 Unmodified _EISLHIVKN_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 0.5247636613948944 0.34703895399870666 1 {M(Oxidation (M))|F} 1 9 3.9794 0 0 0.37841 0 0 299.9752168070318 601.5678194635374 901.5430362705692 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.37841 - 1 + NaN NaN 85171.1 NaN 2882 1895 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4780 31.624 NaN 21907 35 0 4425.7 0.261 -1 FCIICHLCC 9 15 556.2323302336283 1110.4501075340565 2 556.2312622070312 MULTI HCD FTMS 0 0 0 4776 6841.39599609375 0.6083411269124661 14 -0.33600425720214844 4 Carbamidomethyl (C) _FC(Carbamidomethyl (C))IICHLCC_ ENST00000355739.8_3_13:103498466-103498565:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99064.8 NaN 2883 1895 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4781 31.628 NaN 48898 35 0 5434.3 0.263 + 7514 FWPTRETFF 9 34 410.86969933683923 NaN 0 410.8777160644531 PEAK HCD FTMS 0 0 0 4776 2219.632568359375 0.9258934124456465 -1 0.02672576904296875 5 Unmodified _FWPTRETFF_ REV__ENST00000517635.2_1_7:27155632-27161591:+|nuORF 2.0597508629832335 0.2852655770354268 1 K 1 -1 4.6041 0 0 0.56166 0 0 300.4636285547347 388.1340731256469 688.5977016803816 0 0 0 0 0 0 0 0 0 K 0.56166 - 1 + NaN NaN 91405.9 NaN 2884 1895 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4782 31.631 NaN 18016 35 0 4291.1 0.261 + -1 CCCKAFLW 8 17 572.7413940429688 NaN 0 572.7413940429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))KAFLW_ REV__nc|ENSG00000160145|O60229-4|KALRN;REV__nc|ENSG00000160145|O60229-6|KALRN 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91904.1 NaN 2885 1895 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4784 31.636 NaN 486250 35 0 64514 0.327 + 8714 HGYDKDPVL 9 76 522.2618098358441 1042.5090667384882 2 522.2615356445312 MULTI HCD FTMS 0 0 0 4783 201150.53125 0.8440567119430668 4 -0.10893821716308594 1 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 63.227496030279354 0.01306643085373406 1 {[HG]|PP}YDKDVP 8 2 39.942 0 0 3.8314 0 0 0 128.07962537738072 128.07962537738072 -1.000992472079723 0 -1.000992472079723 0 0 1.6956290139465233 0 1.1382104921644451 0 {[HG]|PP}YDKDVP 3.8314 - 477 NaN NaN 159474.1 NaN 2886 1896 4783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4785 31.646 NaN 153970 35 0 22245 0.273 -1 LPDDPAKTTM 10 39 552.7657894076201 1103.5170258820401 2 552.7659301757812 MULTI HCD FTMS 0 0 0 4783 88172.9296875 0.2360774339781772 6 -0.1457538604736328 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 19.625955294349634 0.3275374527965692 1 {I|L}PDD 4 -1 40.745 0 0 3.6923 0 0 0 660.3032452421378 660.3032452421378 24.547509540478032 0 0 0 0 0.8807196863200843 0 0 0 {I|L}PDD 3.6923 + + 19 + NaN NaN 102475.5 NaN 2887 1896 4783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4786 31.65 NaN 132780 35 0 39636 0.261 + 24305 RYGDGGSTF 9 27 480.21475031866044 958.4149477041209 2 480.2145080566406 MULTI HCD FTMS 0 0 0 4783 84576.84375 0.470693064950453 6 -0.1457538604736328 3 Unmodified _RYGDGGSTF_ ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 16.149105407346934 0.22083165093524068 1 NST{M(Oxidation (M))|F} 4 6 43.175 0 0 4.5049 0 0 491.2129078595719 0 491.2129078595719 0 43.17532531436136 0 0 0 1 0 0.4247425010840047 0 NST{M(Oxidation (M))|F} 4.5049 - 22 NaN NaN 105178.4 NaN 2888 1896 4783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4787 31.653 NaN 146230 35 0 23133 0.262 + 20316 NYQKRFQNL 9 42 404.2157398407037 1209.625390122311 3 404.2156982421875 MULTI HCD FTMS 0 0 0 4783 53135.71484375 0.2320861683653086 8 -0.1991558074951172 4 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 5.296884461304476 0.3108627248283497 1 {I|L} 1 8 14.604 0 0 1.2073 0 0 1078.5308294307079 0 1078.5308294307079 0 11.839883926472972 0 0 0 0 0 0 0 + {I|L} 1.2073 + + 3 + NaN NaN 107218.6 NaN 2889 1896 4783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4788 31.656 NaN 145100 35 0 44632 0.261 -1 SAAAVDAGMAM 11 34 513.7151402458435 1025.4157275584869 2 513.7152099609375 MULTI HCD FTMS 0 0 0 4783 61841.796875 0.760102718893403 24 -0.5990676879882812 5 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 38.175570920033316 0.14869995854639997 1 [QT]AV 4 -1 36.682 0 0 3.5773 0 0 0 623.1810907405192 623.1810907405192 25.445312593723983 0 0 0 0 1.4247425010840047 0 0.9247425010840047 0 [QT]AV 3.5773 - 40 NaN NaN 101245.6 NaN 2890 1896 4783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4789 31.66 NaN 13252 35 0 4204.1 0.261 -1 DWMKMKVKL 9 12 605.8200662743983 1209.6255796155965 2 605.8203735351562 MULTI HCD FTMS 0 0 0 4783 18890.990234375 0.30265642844907914 10 -0.2525310516357422 6 2 Oxidation (M) _DWM(Oxidation (M))KM(Oxidation (M))KVKL_ ENSG00000186866|ENST00000349485|POFUT2;nc|ENSG00000186866|Q9Y2G5-1|POFUT2;nc|ENSG00000186866|Q9Y2G5-2|POFUT2 0.6014990680409731 0.3464572424761564 1 Q 1 -1 5.4846 0 0 0.45341 0 0 884.1494881622747 194.3885439508422 1078.538032113117 0 0 0 0 0 0 0 0 0 Q 0.45341 - 2 + NaN NaN 78922.8 NaN 2891 1896 4783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4791 31.665 NaN 157100 35 0 21864 0.327 + 18435 MPVHAAVQM 9 43 500.2420140757035 998.469475218207 2 500.2412109375 MULTI HCD FTMS 0 0 0 4790 101298.5078125 0.583080636152935 3 -0.08023262023925781 1 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 64.23631603340823 0.01165516075559909 1 MPVHAAVQ{M(Oxidation (M))|F} 9 0 + 70.756 0 0 7.0864 7.0864 92.057 0 0 0 65.27101595049125 16.478174818886373 16.478174818886373 14.208187539523749 0 2.3182503180159344 0 0 0.5 + + MPVHAAVQ{M(Oxidation (M))|F};MPVHAAV[AG]{M(Oxidation (M))|F};MPVH[Q{I|L}]Q{M(Oxidation (M))|F} 7.0864;5.6634;3.8596 +;-;- + 83 + NaN NaN 105242.5 NaN 2892 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4792 31.669 NaN 64494 35 0 13277 0.262 + 7054 FQHSERIYF 9 31 409.5364833916763 1225.587620775229 3 409.536376953125 MULTI HCD FTMS 0 0 0 4790 21398.701171875 0.3990493084250378 23 -0.5703620910644531 2 Unmodified _FQHSERIYF_ ENSG00000019485|ENST00000683152|PRDM11;nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11 7.101721422024254 0.29718071671418667 1 Y{M(Oxidation (M))|F} 2 7 28.711 0 0 2.3427 0 0 897.447801743666 0 897.447801743666 0 21.264100213633768 0 0 0 0.7742275032520141 0 0 0 + Y{M(Oxidation (M))|F} 2.3427 + + 10 NaN NaN 96486.5 NaN 2893 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4793 31.673 NaN 111790 35 0 17158 0.261 -1 KYLEERAMRQF 11 39 496.25381801751394 1485.739624652742 3 496.2537841796875 MULTI HCD FTMS 0 0 0 4790 28645.900390625 0.5609943790789774 -8 0.1824207305908203 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.41447547578978133 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5572100027227 1191.5572100027227 10.484550065040281 0 0 0 0 0 0 0 0 KY 1.4114 + + 6 + NaN NaN 99488.7 NaN 2894 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4794 31.676 NaN 118270 35 0 19499 0.262 + 32867 WYDSLYRVF 9 47 416.8738388938015 NaN 0 416.8604736328125 PEAK HCD FTMS 0 0 0 4790 1282.37255859375 0.5600427085239202 -2 0.0521240234375 4 Unmodified _WYDSLYRVF_ REV__ENSG00000188869|ENST00000359440|TMC3;REV__ENST00000559982.1_1_15:81630174-81666445:-|nuORF;REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3;REV__TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant 6.2057823575117 0.2651744870083793 1 DVWV 4 -1 17.423 0 0 2.0948 0 0 167.44999604756555 162.02305017642814 329.4730462239937 0 0 0 0 0 0 0 0 0 DVWV 2.0948 - 28 + NaN NaN 98441.6 NaN 2895 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4795 31.68 NaN 54587 35 0 5307.7 0.261 + 22375 QPQQVIHGEKL 11 27 638.8543447276488 1275.6941365220976 2 638.8544311523438 MULTI HCD FTMS 0 0 0 4790 33473.91796875 0.7174090162247708 -1 0.028705596923828125 5 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 1.7824221048909905 0.41110356865096537 1 {I|L}H{[DA]|[EG]}[K{I|L}] 6 5 12.676 0 0 0.99366 0 0 580.2961395511976 0 580.2961395511976 0 5.686362358410124 0 0 0 0 0 0 0 + {I|L}H{[DA]|[EG]}[K{I|L}] 0.99366 + + 25 + NaN NaN 83803 NaN 2896 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4796 31.683 NaN 90701 35 0 7354.8 0.262 + 8931 HPDPDSSVKI 10 35 547.7777311976489 1093.5409094620977 2 547.7781372070312 MULTI HCD FTMS 0 0 0 4790 37306.9609375 0.37165786118214555 -6 0.1322021484375 6 Unmodified _HPDPDSSVKI_ ENSG00000198589|ENST00000651943|LRBA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;nc|ENSG00000198589|P50851|LRBA 34.93206674587334 0.18938571726943593 1 HPD 3 7 30.674 0 0 2.805 0 0 0 741.3796748810562 741.3796748810562 26.694699959806982 0 0 0 0 0.9247425010840047 0 0 0 + HPD 2.805 + + 20 + NaN NaN 91171.8 NaN 2897 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4797 31.686 NaN 43583 35 0 6640.8 0.261 -1 MCTMCRFV 8 26 532.2127793986914 1062.4110058641827 2 532.2127075195312 MULTI HCD FTMS 0 0 0 4790 10267.2548828125 0.24369048007562477 6 -0.1437530517578125 7 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TMCRFV_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|113|1|anti-sense 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96852.9 NaN 2898 1897 4790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4799 31.692 NaN 652790 35 0 55367 0.327 + 8715 HGYDKDPVL 9 87 522.2618098358441 1042.5090667384882 2 522.2792358398438 MULTI HCD FTMS 0 0 0 4798 113284.09375 0.47535643625636764 6 -0.14362716674804688 1 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 32.037481411007896 0.10189719824197178 1 QY{I|L}S{M(Oxidation (M))|F}{I|L} 6 7 43.615 0 0 4.1837 0 0 0 288.13520227603755 288.13520227603755 12.427958333240039 0 0 0 0 0 0 0.6694451763165201 0 QY{I|L}S{M(Oxidation (M))|F}{I|L} 4.1837 - 1032 + NaN NaN 187318.5 NaN 2899 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4800 31.696 NaN 221690 35 0 53492 0.261 -1 NADPQAVTM 9 45 481.71612515155437 961.4176973699088 2 481.7159729003906 MULTI HCD FTMS 0 0 0 4798 80033.7578125 0.05562671577302683 -23 0.4938678741455078 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 1 AVT{M(Oxidation (M))|F} 4 -1 49.68 0 0 5.1674 0 0 525.21775948104 0 525.21775948104 0 34.463950151760656 0 0 0 1.9247425010840047 0 0 0 AVT{M(Oxidation (M))|F} 5.1674 + + 105 + NaN NaN 115367.6 NaN 2900 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4801 31.7 NaN 211490 35 0 29353 0.261 + 21831 QATAEANNL 9 51 466.2275041288264 930.4404553244528 2 466.2274169921875 MULTI HCD FTMS 0 0 0 4798 133930.21875 0.3934631801815978 -4 0.10567283630371094 3 Unmodified _QATAEANNL_ ENSG00000119787|ENST00000378954|ATL2;ENSG00000184743|ENST00000398868|ATL3;ENSG00000198513|ENST00000358385|ATL1;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1 57.72198328787511 0.020768266150574023 1 SANN{I|L} 5 5 56.925 0 0 6.118 0 0 413.19273574043126 0 413.19273574043126 0 46.46713777483761 0 0 0 1.1861818737241734 0 0.75 0.7614393726401688 SANN{I|L} 6.118 - 104 NaN NaN 113055 NaN 2901 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4802 31.703 NaN 62813 35 0 17442 0.261 -1 MNLKHCAL 8 19 486.2433460183248 970.4721391034496 2 486.24322509765625 MULTI HCD FTMS 0 0 0 4798 45768.15234375 0.04086025362479765 20 -0.4802074432373047 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MNLKHCAL_ ENST00000373212.5_1_X:80552722-80552779:+|nuORF 5.230669730166228 0.5342319408533849 1 A{I|L} 2 -1 25.217 0 0 2.5984 0 0 768.3387201111888 0 768.3387201111888 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 A{I|L} 2.5984 + + 2 NaN NaN 86503.7 NaN 2902 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4803 31.706 NaN 32372 35 0 6247.1 0.261 + 8486 HADQAEIRSL 10 22 570.2938518458501 1138.5731507585 2 570.2935791015625 MULTI HCD FTMS 0 0 0 4798 27564.517578125 0.028206412674253785 50 -1.1199169158935547 5 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 9.5439744041441 0.42184090036563754 1 HAD 3 7 30.445 0 0 2.674 0 0 0 812.4286715204894 812.4286715204894 24.960762528683702 0 0 0 0 0.4247425010840047 0 0 0 + HAD 2.674 + + 7 + NaN NaN 86393.1 NaN 2903 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4804 31.71 NaN 53641 35 0 9799.1 0.261 -1 HPTDVDYRVM 10 19 624.7877388852504 1247.5609248373007 2 624.78759765625 MULTI HCD FTMS 0 0 0 4798 26952.595703125 0.7861404701098397 -2 0.05552864074707031 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 10.073929032068715 0.4168838835836452 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 98918.9 NaN 2904 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4805 31.713 NaN 35965 35 0 4958.8 0.262 + 4370 EWNMMAYD 8 22 530.1993573857663 1058.3841618383326 2 530.1994018554688 MULTI HCD FTMS 0 0 0 4798 8944.28515625 0.7135513909111314 1 -0.030015945434570312 7 Unmodified _EWNMMAYD_ ENSG00000132970|ENST00000335327|WASF3 2.0597508629832335 0.5389364538378849 1 {[MG]|[TS]}A 3 6 10.458 0 0 0.98807 0 0 0 796.2420187397039 796.2420187397039 10.45757490560675 0 0 0 0 0 0 0 0 {[MG]|[TS]}A 0.98807 - 1 + NaN NaN 97696.4 NaN 2905 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4806 31.716 NaN 38740 35 0 10398 0.261 -1 QATSYEIRM 9 24 557.7632940966382 1113.5120352600763 2 557.7634887695312 MULTI HCD FTMS 0 0 0 4798 11471.7841796875 0.4176856974156915 -3 0.07894706726074219 8 Oxidation (M) _QATSYEIRM(Oxidation (M))_ ENSG00000137975|ENST00000370565|CLCA2 10.799506525563784 0.2670509983294061 1 [QA]TSYE{I|L}[R{M(Oxidation (M))|F}] 9 -1 + 41.884 0 0 3.7615 3.7615 88.988 0 0 0 34.89454989793387 7.147642715192504 7.147642715192504 41.88424994129406 0 0 0 0 0 [QA]TSYE{I|L}[R{M(Oxidation (M))|F}] 3.7615 + + 22 + NaN NaN 83105.4 NaN 2906 1898 4798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4808 31.722 NaN 85883 35 0 8635.9 0.326 + 9230 HPLSDHEATL 10 29 560.2751367728551 1118.5357206125102 2 560.275146484375 MULTI HCD FTMS 0 0 0 4807 42317.73046875 0.007219305319337047 177 -4.451419830322266 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 24.020572477871973 0.2864316864133941 1 T{I|L} 2 8 27.206 0 0 2.4323 0 0 886.3938334287317 0 886.3938334287317 0 7.513487579716767 0 0 0 0.4247425010840047 0 0.5 0 + T{I|L} 2.4323 + + 10 NaN NaN 92544.2 NaN 2907 1899 4807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4809 31.726 NaN 72553 35 0 7748.3 0.264 + 18097 MNWKTWPIF 9 32 408.2071965050887 NaN 0 408.2189636230469 PEAK HCD FTMS 0 0 0 4807 1792.0443115234375 0.791583736123423 1 -0.023393630981445312 2 Unmodified _MNWKTWPIF_ ENSG00000257335|ENST00000475668|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM 2.498486711656943 0.28313952434011336 1 VE 2 9 9.464 0 0 1.1621 0 0 154.05427230529614 429.2257174127563 583.2799897180524 0 0 0 0 0 0 0 0 0 VE 1.1621 - 8 + NaN NaN 89459.9 NaN 2908 1899 4807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4810 31.73 NaN 28411 35 0 5282.2 0.261 -1 CYRACFRQCV 10 22 454.86706845787785 NaN 0 454.867431640625 PEAK HCD FTMS 0 0 0 4807 11971.8701171875 0.5690732215085181 -40 0.8638362884521484 3 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96105.6 NaN 2909 1899 4807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4811 31.733 NaN 82098 35 0 14099 0.261 + 21484 PYFLVPLE 8 45 489.27043416215963 NaN 0 489.2560119628906 PEAK HCD FTMS 0 0 0 4807 4333.0263671875 0.8538582701409716 3 -0.06020927429199219 4 Unmodified _PYFLVPLE_ REV__ENSG00000165164|ENST00000378653|CFAP47 6.354104778181461 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.71577 0 0 163.0928409858887 713.3570040338499 876.4498450197386 0 0 0 0 0 0 0 0 0 P 0.71577 + + 3 + NaN NaN 97818.9 NaN 2910 1899 4807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4812 31.736 NaN 24198 35 0 5088.6 0.261 -1 0 15 469.32877273477493 468.32149626817494 1 469.3282470703125 MULTI HCD FTMS 0 0 0 4807 11692.71484375 0.6644250841342593 -39 0.8373641967773438 5 NaN NaN 1 M 1 -1 3.9794 0 0 0.84972 0 0 83.01065750039994 251.24257837467033 334.2532358750703 0 0 0 0 0 0 0 0 0 M 0.84972 - 1 + NaN NaN 80880.9 NaN 2911 1899 4807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4813 31.74 NaN 39053 35 0 6269.9 0.261 -1 GLTVTCPVLM 10 25 525.2739476759788 NaN 0 525.2735595703125 PEAK HCD FTMS 0 0 0 4807 1744.9005126953125 0.20719256493342345 5 -0.11361122131347656 6 Oxidation (M) _GLTVTCPVLM(Oxidation (M))_ XYLB|p.S63C|1|0.21|ENSG00000093217|chr3:38360386-38360386|C/G|missense_variant 14.838274106304384 0.3224471714378502 1 {I|L}V 2 -1 19.776 0 0 1.8861 0 0 165.04916380723245 668.3117769830686 833.3609407903011 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L}V 1.8861 - 4 + NaN NaN 108753.1 NaN 2912 1899 4807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4815 31.745 NaN 1212800 35 0 116430 0.327 + 22373 QPQQVIHGEKL 11 89 426.23836410715313 1275.6932629216594 3 426.2386779785156 MULTI HCD FTMS 0 0 0 4814 581310.875 0.8647910600010097 2 -0.036815643310546875 1 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 31.44599026986405 0.19204057578885542 1 [QP]QQV{I|L}H{[DA]|[EG]}K{I|L} 11 0 + 56.675 0 0 4.4426 4.4426 80.964 0 0 0 11.549250328207954 11.5487980323444 11.5487980323444 1.0921451867560208 0 0.9247425010840047 0 0 0.9247425010840047 + + [QP]QQV{I|L}H{[DA]|[EG]}K{I|L};[QP]QQV{I|L}H{I|L}[NS]{I|L};[QP]QQV{I|L}{I|L}H[NS]{I|L};[QP][AG]QV{I|L}H{[DA]|[EG]}K{I|L};[QP]Q[AG]V{I|L}H{[DA]|[EG]}K{I|L};[QP][AG]QV{I|L}H{I|L}[NS]{I|L};[QP]Q[AG]V{I|L}H{I|L}[NS]{I|L};[QP]QQV{I|L}[KT]P[HT];[QP][AG]QV{I|L}{I|L}H[NS]{I|L};[QP]Q[AG]V{I|L}{I|L}H[NS]{I|L} 4.4426;4.357;3.962;3.7271;3.7271;3.6415;3.6415;3.2988;3.2464;3.2464 +;-;-;-;-;-;-;-;-;- + 923 + NaN NaN 270820.1 NaN 2913 1900 4814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4816 31.75 NaN 104060 35 0 21755 0.261 -1 LPDDPRQM 8 28 494.2318455542109 986.4491381752218 2 494.231689453125 MULTI HCD FTMS 0 0 0 4814 43055.19140625 0.7046449122189701 2 -0.036815643310546875 2 Oxidation (M) _LPDDPRQM(Oxidation (M))_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 9.38312468134398 0.524755689532147 1 {I|L}PDD 4 -1 36.938 0 0 3.7446 0 0 0 543.2349797382515 543.2349797382515 31.453650195120844 0 0 0 0 0.5 0 0 0 {I|L}PDD 3.7446 + + 7 + NaN NaN 92995.6 NaN 2914 1900 4814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4817 31.753 NaN 146950 35 0 24019 0.261 + 573 APEERPAAL 9 45 477.2563105718249 952.4980682104498 2 477.2561950683594 MULTI HCD FTMS 0 0 0 4814 42476.36328125 0.12880274292140678 -7 0.18555641174316406 3 Unmodified _APEERPAAL_ ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF 33.4449034751529 0.0954363425218424 1 APEER 5 4 45.745 0 0 4.8027 0 0 0 367.19941126041255 367.19941126041255 24.776296993281406 0 0 0 0 1.055462187404089 0 0.3252574989159953 0 + APEER 4.8027 + + 45 + NaN NaN 102444.9 NaN 2915 1900 4814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4818 31.757 NaN 18451 35 0 4708.9 0.261 -1 WRSCLIKIC 9 14 589.8119283445633 NaN 0 589.830322265625 PEAK HCD FTMS 0 0 0 4814 4745.14892578125 0.6194929371392902 -3 0.08023262023925781 4 Carbamidomethyl (C) _WRSC(Carbamidomethyl (C))LIKIC_ ENST00000518644.5_1_17:78389610-78398076:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80085.8 NaN 2916 1900 4814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4819 31.76 NaN 39836 35 0 8239.7 0.261 + 3322 EEKKTMVR 8 31 510.77885305829244 NaN 0 510.7788391113281 PEAK HCD FTMS 0 0 0 4814 4497.888671875 0.34898179502667537 -3 0.08023262023925781 5 Unmodified _EEKKTMVR_ REV__ENSG00000186635|ENST00000393609|ARAP1;REV__nc|ENSG00000186635|Q96P48-3|ARAP1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81979.3 NaN 2917 1900 4814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4821 31.765 NaN 108790 35 0 19326 0.327 + 9684 HVTQEDFEM 9 33 576.2374894889024 1150.4604260446047 2 576.2376708984375 MULTI HCD FTMS 0 0 0 4820 67129.9609375 0.19013395841596128 -6 0.1523895263671875 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 55.50274090549119 0.023872834264864425 1 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 4 67.295 0 0 5.8494 0 0 465.2339988979234 0 465.2339988979234 0 61.81031895404267 0 0 0 2.4247425010840047 0 1.2614393726401687 0 + ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.8494 + + 85 + NaN NaN 103312.5 NaN 2918 1901 4820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4822 31.77 NaN 181140 35 0 16656 0.261 + 8591 HAVQTVETM 9 55 508.24758788169027 1014.4806228301806 2 508.247802734375 MULTI HCD FTMS 0 0 0 4820 40717.90625 0.9012081921383864 -1 0.020032882690429688 2 Unmodified _HAVQTVETM_ ENSG00000152147|ENST00000281950|GEMIN6 22.736283301280096 0.1639198954644489 1 ETM 3 6 34.45 0 0 3.3959 0 0 635.3391138076769 0 635.3391138076769 0 13.481362441963327 0 0 0 0.8252574989159953 0 0 0 + ETM 3.3959 + + 31 NaN NaN 115192.9 NaN 2919 1901 4820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4823 31.773 NaN 25760 35 0 3679.1 0.261 + 22168 QKWKTKFS 8 21 526.7981464242033 NaN 0 526.8077392578125 PEAK HCD FTMS 0 0 0 4820 2296.535400390625 1 0 0 3 Unmodified _QKWKTKFS_ ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;nc|ENSG00000183091|P20929-4|NEB;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant 0.6903765706972694 0.38822285293237185 1 {I|L} 1 8 6.9897 0 0 0.66468 0 0 229.20040554196277 706.2722872369749 935.4726927789377 0 0 0 0 0 0 0 0 0 {I|L} 0.66468 - 2 + NaN NaN 88948.6 NaN 2920 1901 4820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4824 31.777 NaN 63877 35 0 10628 0.262 + -1 DFCRFIKML 9 46 410.54357328286005 1228.6088904487801 3 410.54437255859375 MULTI HCD FTMS 0 0 0 4820 9070.609375 0.6738793875182439 2 -0.043487548828125 4 Carbamidomethyl (C) _DFC(Carbamidomethyl (C))RFIKML_ REV__ENST00000465180.5_1_1:156728902-156736658:-|nuORF 2.282774691075616 0.33371192131023203 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2603 0 0 1063.5301378626457 0 1063.5301378626457 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2603 + + 6 + NaN NaN 100956.1 NaN 2921 1901 4820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4826 31.782 NaN 161400 35 0 14717 0.327 + 33005 YAVTEAGFAA 10 53 500.2420140757035 998.469475218207 2 500.2427978515625 MULTI HCD FTMS 0 0 0 4825 54228.05859375 0.3121401448549337 8 -0.18680381774902344 1 Unmodified _YAVTEAGFAA_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 25.399314129420986 0.2735354021946395 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[TA]VQ{M(Oxidation (M))|F} 9 5 + 71.364 0 0 7.1473 7.1473 90.713 0 0 0 24.1373427585527 65.87939829096356 24.1373427585527 9.208187539523756 0 2.2134679910804405 1.6989700043360187 0.23965182871044374 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[TA]VQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[TA]V[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[KC]V{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}KKQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[TA]{[SA]|[TG]}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[QN]|[E{I|L}]|[KN]}Q{M(Oxidation (M))|F} 7.1473;6.2251;4.4578;3.885;3.7348;3.542 -;-;-;-;-;- 179 NaN NaN 100703.9 NaN 2922 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4827 31.786 NaN 101230 35 0 33270 0.261 -1 SAAAVDAGMAM 11 21 513.7151402458435 1025.4157275584869 2 513.7152709960938 MULTI HCD FTMS 0 0 0 4825 36356.98046875 0.446866700217485 30 -0.7361660003662109 2 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 20.41453444215458 0.279209903849948 1 [QT]AVW 5 -1 39.208 0 0 3.8236 0 0 0 437.11474514179787 437.11474514179787 39.20818753952375 0 0 0 0 1.4247425010840047 0 0.4247425010840047 0 [QT]AVW 3.8236 - 21 NaN NaN 113436 NaN 2923 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4828 31.79 NaN 97886 35 0 10146 0.262 -1 CIEPLHSKPE 10 43 403.86917105857924 1208.5856837759377 3 404.2157897949219 MULTI HCD FTMS 0 0 0 4825 2014.8140869140625 0.13552456668547957 -3 0.06020927429199219 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))IEPLHSKPE_ ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8 1.7422754331352037 0.46608156381052757 1 G 1 -1 6.9897 0 0 0.57834 0 0 669.3213537972252 479.2097262018188 1148.531079999044 0 0 0 0 0 0 0 0 0 G 0.57834 - 3 + NaN NaN 105584.8 NaN 2924 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4829 31.793 NaN 91412 35 0 6926.1 0.261 + 25062 SAASEQHVF 9 41 488.2302764017691 974.4459998703383 2 488.2301330566406 MULTI HCD FTMS 0 0 0 4825 42251.625 0.5038046594921979 -3 0.06020927429199219 4 Unmodified _SAASEQHVF_ ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 31.26834338654808 0.10542797264966089 1 {[SA]|[TG]}ASEQHV{M(Oxidation (M))|F} 9 0 + 53.457 0 0 5.4859 5.4859 87.059 0 0 0 53.45713011225959 14.973024840566467 14.973024840566467 9.208187539523749 0 0.9634679910804405 0 0 0 + + {[SA]|[TG]}ASEQHV{M(Oxidation (M))|F};{[SA]|[TG]}ASE[AG]HV{M(Oxidation (M))|F} 5.4859;4.5409 +;- + 72 + NaN NaN 95061.9 NaN 2925 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4830 31.797 NaN 34109 35 0 8589.9 0.261 + 19054 NEEQPHELSP 10 18 590.2675834773363 1178.5206140214725 2 590.266845703125 MULTI HCD FTMS 0 0 0 4825 18052.138671875 0.3085542692193623 -8 0.19589805603027344 5 Unmodified _NEEQPHELSP_ REV__ENSG00000137275|ENST00000259808|RIPK1;REV__nc|ENSG00000137275|Q13546-2|RIPK1 1.3295316138638542 0.46826628246186464 1 W 1 -1 3.9794 0 0 0.33766 0 0 800.3850682224476 189.04116235904533 989.4262305814929 0 0 0 0 0 0 0 0 0 W 0.33766 - 1 + NaN NaN 111170.3 NaN 2926 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4831 31.8 NaN 30592 35 0 5756.8 0.261 -1 EKLSDLDYM 9 21 565.2578489322635 1128.501144931327 2 565.7501220703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _EKLSDLDYM(Oxidation (M))_ ENSG00000135972|ENST00000258455|MRPS9;SIK3-MRPS9|1|fusion 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2941 0 0 963.4560074574973 0 963.4560074574973 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2941 + + 1 + NaN NaN 111363 NaN 2927 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4832 31.803 NaN 50547 35 0 8335.7 0.261 + -1 KCTYVCRK 8 33 529.2690090634327 NaN 0 529.2748413085938 PEAK HCD FTMS 0 0 0 4825 9179.4755859375 1 0 0 7 Carbamidomethyl (C) _KCTYVC(Carbamidomethyl (C))RK_ REV__ENSG00000118058|ENST00000534358|KMT2A;REV__nc|ENSG00000118058|Q03164-2|KMT2A;REV__nc|ENSG00000118058|Q03164|KMT2A 2.0597508629832335 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89212.1 NaN 2928 1902 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4834 31.809 NaN 222030 35 0 22642 0.327 + 33006 YAVTEAGFAA 10 48 500.2420140757035 998.469475218207 2 500.2441711425781 MULTI HCD FTMS 0 0 0 4833 65523.921875 0.3771598503783263 9 -0.20671463012695312 1 Unmodified _YAVTEAGFAA_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 32.30548876998284 0.21217886106551395 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[KC]V{[ES]|[DT]|[{I|L}C]} 9 6 + 49.868 0 0 4.9944 4.9944 88.056 0 0 0 5.023751651795081 25.145228064085998 5.023751651795081 12.91325298820567 0 0.5 1.6989700043360187 0.6505149978319906 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[KC]V{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}[TA]TV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}][TP][K{I|L}];[HD]RR{[CP]|[EA]}{[ES]|[DT]|[{I|L}C]} 4.9944;3.7011;2.3183;0.19387 -;-;-;- 127 NaN NaN 109730.2 NaN 2929 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4835 31.813 NaN 136730 35 0 15889 0.261 + 29854 VFAEQGQSLE 10 49 554.26947460813 NaN 0 554.2568359375 PEAK HCD FTMS 0 0 0 4833 12594.56640625 1 0 0 2 Unmodified _VFAEQGQSLE_ REV__ENST00000512987.1_1_22:23735173-23735854:+|nuORF 12.240655878213236 0.32970798410958835 1 {M(Oxidation (M))|F}SQD 4 -1 24.725 0 0 2.2345 0 0 113.11169154816055 513.2425020807249 626.3541936288855 0 0 0 0 0 0 0 0.7302046884880937 0 {M(Oxidation (M))|F}SQD 2.2345 - 42 + NaN NaN 122286.1 NaN 2930 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4836 31.817 NaN 136870 35 0 21798 0.261 -1 KYLEERAMRQF 11 30 496.25381801751394 1485.739624652742 3 496.25390625 MULTI HCD FTMS 0 0 0 4833 41914.8828125 0.8208509188722173 -2 0.043487548828125 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5577997531188 1191.5577997531188 9.731975075880328 0 0 0 0 0 0 0 0 KY 1.4114 + + 11 + NaN NaN 113900.2 NaN 2931 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4837 31.82 NaN 168240 35 0 18189 0.261 + 25073 SADMSHVAL 9 41 473.71872724251125 945.4229015518225 2 473.7184753417969 MULTI HCD FTMS 0 0 0 4833 72634.4765625 0.18741655951154845 -5 0.11693000793457031 4 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 49.93300154707207 0.03166451819912738 1 {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 9 0 + 47.457 0 0 5.0197 5.0197 82.274 0 0 0 5.6424927368725974 41.77062918686282 5.6424927368725974 1.7609125905568135 0 1.9247425010840047 0 0.3807196863200844 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]SA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]{I|L}{[SA]|[TG]} 5.0197;4.8334;1.816 +;-;- + 47 NaN NaN 106778.8 NaN 2932 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4838 31.823 NaN 30715 35 0 4971.2 0.261 -1 LPTENVDKM 9 23 531.7604395501136 1061.506326167027 2 531.7606811523438 MULTI HCD FTMS 0 0 0 4833 11874.44140625 0.3194050758585965 -10 0.24907684326171875 5 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 7.101721422024254 0.29718071671418667 1 {I|L}P 2 -1 20.969 0 0 1.9754 0 0 0 848.3447970025999 848.3447970025999 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 1.9754 + + 1 + NaN NaN 88550.7 NaN 2933 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4839 31.827 NaN 13624 35 0 4783.5 0.261 + 18652 MYHLFQLKR 9 11 618.340966034113 1234.6673791350258 2 618.3407592773438 MULTI HCD FTMS 0 0 0 4833 8141.22705078125 0.7411230277259616 1 -0.026697158813476562 6 Unmodified _MYHLFQLKR_ ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100201 NaN 2934 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4840 31.83 NaN 15727 35 0 3912.7 0.261 + -1 MRISFSMLPL 10 15 605.8200662743983 1209.6255796155965 2 605.8198852539062 MULTI HCD FTMS 0 0 0 4833 12915.6669921875 0.20692454944898006 17 -0.4266090393066406 7 Oxidation (M) _MRISFSM(Oxidation (M))LPL_ REV__ENST00000557893.5_1_15:45440187-45444854:+|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84717.4 NaN 2935 1903 4833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4842 31.835 NaN 377190 35 0 42050 0.327 + 21832 QATAEANNL 9 59 466.2275041288264 930.4404553244528 2 466.2274169921875 MULTI HCD FTMS 0 0 0 4841 258670.390625 0.7599276359289054 2 -0.053375244140625 1 Unmodified _QATAEANNL_ ENSG00000119787|ENST00000378954|ATL2;ENSG00000184743|ENST00000398868|ATL3;ENSG00000198513|ENST00000358385|ATL1;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1 125.52916310638031 0.0008761121089336018 1 NASANN{I|L} 7 4 77.6 0 0 8.3401 0 0 228.11030776191564 0 228.11030776191564 0 67.67806064157476 0 0 0 1.3494850021680094 0 1.4489700043360187 1.666386562212267 NASANN{I|L} 8.3401 - 369 NaN NaN 135748.5 NaN 2936 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4843 31.84 NaN 384110 35 0 36461 0.261 + 8703 HGPIESFEK 9 73 522.2618098358441 1042.5090667384882 2 522.2794189453125 MULTI HCD FTMS 0 0 0 4841 47916.1015625 0.20106288997918711 12 -0.28337669372558594 2 Unmodified _HGPIESFEK_ REV__ENSG00000197748|ENST00000357060|CFAP43;REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43 16.149105407346934 0.22083165093524068 1 QY{I|L}S{M(Oxidation (M))|F}{I|L} 6 -1 46.798 0 0 4.489 0 0 0 288.1351717584594 288.1351717584594 32.94124931625143 0 0 0 0 0 0 0.9876954943324545 0 QY{I|L}S{M(Oxidation (M))|F}{I|L} 4.489 - 657 + NaN NaN 154467.2 NaN 2937 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4844 31.843 NaN 136600 35 0 11085 0.261 + 8932 HPDPDSSVKI 10 42 547.7777311976489 1093.5409094620977 2 547.777587890625 MULTI HCD FTMS 0 0 0 4841 75344.59375 0.7505947914566085 1 -0.03000640869140625 3 Unmodified _HPDPDSSVKI_ ENSG00000198589|ENST00000651943|LRBA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;nc|ENSG00000198589|P50851|LRBA 45.739877483867886 0.09559676962230333 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[DP]SW 7 4 35.507 0 0 3.2469 0 0 0 256.16772087710905 256.16772087710905 30.902435203467178 0 0 0 0 1.805462187404089 0 0.9247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[DP]SW 3.2469 - 49 NaN NaN 107473.6 NaN 2938 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4845 31.847 NaN 231970 35 0 65147 0.261 + 18798 NADPQAVTM 9 35 481.71612515155437 961.4176973699088 2 481.7158508300781 MULTI HCD FTMS 0 0 0 4841 108342.6015625 0.07530251318883091 -17 0.39612388610839844 4 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 43.981846655682396 0.04706587046877104 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 61.859 0 0 6.4341 6.4341 93.873 0 0 0 7.147642715192504 50.889399919613965 7.147642715192504 61.85850004969453 0 2.274227503252014 0 0 0.3252574989159953 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 6.4341 + + 55 NaN NaN 114621.9 NaN 2939 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4846 31.85 NaN 331200 35 0 41237 0.261 + 25495 SFFGDWEL 8 49 500.7238645971688 999.4331762611376 2 500.72381591796875 MULTI HCD FTMS 0 0 0 4841 109331.1171875 0.5466468737529495 -5 0.11361122131347656 5 Unmodified _SFFGDWEL_ REV__ENSG00000130816|ENST00000359526|DNMT1;REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF;REV__nc|ENSG00000130816|P26358-3|DNMT1;REV__nc|ENSG00000130816|P26358|DNMT1 32.116972079565 0.3321965280364247 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT 4 -1 32.294 0 0 3.2312 0 0 0 562.1919389132019 562.1919389132019 2.2885593051641706 0 0 0 0 0 1.5228787452803376 0.3252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT 3.2312 - 73 NaN NaN 128351.6 NaN 2940 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4847 31.853 NaN 117020 35 0 15717 0.262 -1 HPTDVDYRVM 10 46 416.86057511967465 1247.559895959224 3 416.8606872558594 MULTI HCD FTMS 0 0 0 4841 24182.015625 0.5566301349244049 1 -0.03000640869140625 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 31.635753872319068 0.2179907440432224 1 WDVWV{M(Oxidation (M))|F} 6 -1 51.375 0 0 4.1181 0 0 397.2038746564469 0 397.2038746564469 0 51.37517525248825 0 0 0 2.1677353201839438 0 0.8807196863200843 0 WDVWV{M(Oxidation (M))|F} 4.1181 - 106 NaN NaN 101750 NaN 2941 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4848 31.857 NaN 14256 35 0 2790.9 0.261 + 30834 VQASLITRQFN 11 13 638.8543447276488 1275.6941365220976 2 638.8546142578125 MULTI HCD FTMS 0 0 0 4841 8729.71484375 0.1870942070128797 6 -0.13340187072753906 7 Unmodified _VQASLITRQFN_ REV__ENSG00000110060|ENST00000227474|PUS3 0.4545168274142398 0.41692731010159206 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85860.1 NaN 2942 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4849 31.86 NaN 83054 35 0 16203 0.262 -1 MVISEKEAM 9 24 527.2513739008637 1052.4881948685272 2 527.251708984375 MULTI HCD FTMS 0 0 0 4841 14650.169921875 0.2500563727098212 -3 0.07018470764160156 8 Oxidation (M) _MVISEKEAM(Oxidation (M))_ ENSG00000115548|ENST00000312912|KDM3A 32.78568957990786 0.09846250359632436 1 ES{I|L}[DP] 5 -1 34.961 0 0 3.3217 0 0 493.22081191230626 0 493.22081191230626 0 15.356668758921828 0 0 0 1 0 0.4247425010840047 0 ES{I|L}[DP] 3.3217 - 10 NaN NaN 88523.9 NaN 2943 1904 4841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4851 31.865 NaN 86149 35 0 8074.9 0.327 + 9231 HPLSDHEATL 10 34 560.2751367728551 1118.5357206125102 2 560.27490234375 MULTI HCD FTMS 0 0 0 4850 38984.13671875 0.0066506020636259286 183 -4.61347770690918 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 19.256988751693697 0.33098864134661865 1 C{I|L} 2 9 19.693 0 0 1.7606 0 0 884.4242420880875 0 884.4242420880875 0 3.4948500216800937 0 0 0 0.5 0 0 0 C{I|L} 1.7606 - 7 NaN NaN 93318.1 NaN 2944 1905 4850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4852 31.87 NaN 57305 35 0 8388.7 0.261 -1 HPTDVDYRVM 10 28 624.7877388852504 1247.5609248373007 2 624.7871704101562 MULTI HCD FTMS 0 0 0 4850 22190.453125 0.6472405642776452 5 -0.10339546203613281 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 13.042465956692817 0.38911719078024076 1 T{[ES]|[DT]|[{I|L}C]} 3 -1 12.447 0 0 0.99773 0 0 912.4012928693375 0 912.4012928693375 0 5 0 0 0 0 0 0.5 0 T{[ES]|[DT]|[{I|L}C]} 0.99773 - 4 NaN NaN 84995.6 NaN 2945 1905 4850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4853 31.873 NaN 29771 35 0 5729.7 0.261 + 8487 HADQAEIRSL 10 19 570.2938518458501 1138.5731507585 2 570.7949829101562 MULTI HCD FTMS 0 0 0 4850 8052.87548828125 0.014006639016965463 57 -1.2998065948486328 3 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 7.101721422024254 0.4377131641736035 1 HAD 3 7 31.198 0 0 2.7401 0 0 0 812.4280489557249 812.4280489557249 31.197887582883936 0 0 0 0 0.5 0 0 0 + HAD 2.7401 + + 5 + NaN NaN 78377.1 NaN 2946 1905 4850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4854 31.877 NaN 22787 35 0 5991.7 0.261 + 28559 TPTLYHGYY 9 17 557.7632940966382 1113.5120352600763 2 557.7635498046875 MULTI HCD FTMS 0 0 0 4850 9955.91796875 0.3624932682706761 4 -0.08342361450195312 4 Unmodified _TPTLYHGYY_ ENSG00000170276|ENST00000304298|HSPB2 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89113.4 NaN 2947 1905 4850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4855 31.88 NaN 12852 35 0 3494.3 0.261 + 2475 DRNPYPRPPV 10 12 605.8200662743983 1209.6255796155965 2 605.8206787109375 MULTI HCD FTMS 0 0 0 4850 3866.226806640625 0.061941612501746846 19 -0.48652076721191406 5 Unmodified _DRNPYPRPPV_ ENST00000366628.9_1_1:233086394-233086478:+|nuORF 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82705.8 NaN 2948 1905 4850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4856 31.883 NaN 14981 35 0 4451 0.261 + -1 PEQCCDCMLM 10 16 602.6932420519465 NaN 0 602.6929931640625 PEAK HCD FTMS 0 0 0 4850 8392.4609375 0.7777921580730324 -1 0.03000640869140625 6 2 Oxidation (M) _PEQCCDCM(Oxidation (M))LM(Oxidation (M))_ REV__ENST00000436710.5_1_9:132096435-132104149:+|nuORF;REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF 1.1933415558491238 0.33916295405077446 1 {I|L} 1 -1 5.4846 0 0 0.45577 0 0 165.04803087948045 922.2207735650999 1087.2688044445804 0 0 0 0 0 0 0 0 0 {I|L} 0.45577 + + 1 + NaN NaN 84090.3 NaN 2949 1905 4850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4858 31.889 NaN 527060 35 0 128620 0.326 + 574 APEERPAAL 9 53 477.2563105718249 952.4980682104498 2 477.2559814453125 MULTI HCD FTMS 0 0 0 4857 289820.28125 0.8788334098209318 -1 0.02336883544921875 1 Unmodified _APEERPAAL_ ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF 79.59630418116434 0.005983006570063981 1 [PA]EERAPA{I|L} 9 2 + 97.304 0 0 10.216 10.216 91.307 0 0 0 6.791746928241125 4.771212547196626 4.771212547196626 4.771212547196626 0 2.3494850021680094 1.6989700043360187 1.1747425010840047 0 [PA]EERAPA{I|L};[PA]EERAP{I|L}A;APEERAPA{I|L};[PA]EERA{I|L}PA;APEERAAP{I|L};[EP]AERAPA{I|L};[EP]AERAP{I|L}A;[PA]AA[NS]AAPA{I|L};[EP]AERA{I|L}PA;[PA]AA[NS]AAP{I|L}A 10.216;9.7147;9.5026;9.0839;8.7406;7.67;7.1691;6.9464;6.5383;6.4455 -;-;-;-;-;-;-;-;-;- 467 NaN NaN 153568.4 NaN 2950 1906 4857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4859 31.893 NaN 269690 35 0 23476 0.261 + 22374 QPQQVIHGEKL 11 62 426.23836410715313 1275.6932629216594 3 426.23834228515625 MULTI HCD FTMS 0 0 0 4857 118720.59375 0.17661549530277024 8 -0.1800556182861328 2 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 11.27118911966207 0.35887617142196776 1 [QP]QQV{I|L}H 7 4 31.075 0 0 2.4359 0 0 0 442.23154627017817 442.23154627017817 -3.003574386705388 0 -3.003574386705388 0 0 0 0 0 0.5 + [QP]QQV{I|L}H 2.4359 + + 141 + NaN NaN 120462.5 NaN 2951 1906 4857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4860 31.897 NaN 55491 35 0 10433 0.261 + 14095 KYYKEVQTV 9 20 579.3135209329481 1156.6124889326961 2 579.3134765625 MULTI HCD FTMS 0 0 0 4857 12476.9189453125 0.5968546527592667 1 -0.020021438598632812 3 Unmodified _KYYKEVQTV_ ENSG00000112159|ENST00000369393|MDN1 3.2813086475875832 0.32614229037259 1 KY{I|L} 3 7 26.198 0 0 2.2651 0 0 0 749.3520601861936 749.3520601861936 26.197887582883936 0 0 0 0 0 0 0 0 KY{I|L} 2.2651 - 5 + NaN NaN 105910.4 NaN 2952 1906 4857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4861 31.9 NaN 36834 35 0 5572.7 0.261 -1 EYAKIEETM 9 21 565.2578489322635 1128.501144931327 2 565.2579345703125 MULTI HCD FTMS 0 0 0 4857 14614.2158203125 0.9587953856213723 -1 0.02336883544921875 4 Oxidation (M) _EYAKIEETM(Oxidation (M))_ ENSG00000081803|ENST00000449022|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;nc|ENSG00000081803|Q86UW7-3|CADPS2 3.944395688203298 0.32111559684428237 1 {I|L} 1 -1 5.4846 0 0 0.486 0 0 491.23803565573945 521.1562594049436 1012.3942950606831 0 0 0 0 0 0 0 0 0 {I|L} 0.486 + + 5 + NaN NaN 87208.1 NaN 2953 1906 4857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4862 31.903 NaN 36046 35 0 7705.8 0.262 -1 0 27 469.32877273477493 468.32149626817494 1 469.3284606933594 MULTI HCD FTMS 0 0 0 4857 10674.94921875 0.6065917220745456 -32 0.7206058502197266 5 NaN NaN 1 Y 1 -1 0.9691 0 0 0.20693 0 0 155.35196609414993 146.88706384830314 302.23902994245304 0 0 0 0 0 0 0 0 0 Y 0.20693 - 1 + NaN NaN 84445.9 NaN 2954 1906 4857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4864 31.909 NaN 524900 35 0 102270 0.327 + 9685 HVTQEDFEM 9 45 576.2374894889024 1150.4604260446047 2 576.2373657226562 MULTI HCD FTMS 0 0 0 4863 353066.65625 1 0 0 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 117.76058876431921 0.001675465467887476 1 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 100.26 0 0 8.7146 8.7146 92.575 0 0 0 7.147642715192504 11.791746928241125 7.147642715192504 9.208187539523749 0 3.1747425010840047 0 1.9916440611282624 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[DP][RP]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}DE[QT][HV] 8.7146;7.9142;6.303;1.4706 +;-;-;- + 244 + NaN NaN 158999.4 NaN 2955 1907 4863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4865 31.913 NaN 118520 35 0 15818 0.261 + 30583 VNSQFLVSNS 10 44 547.7777311976489 1093.5409094620977 2 549.2647094726562 MULTI HCD FTMS 0 0 0 4863 1915.731689453125 0.35935572550239403 3 -0.06000518798828125 2 Unmodified _VNSQFLVSNS_ ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1 4.897010918128616 0.4493830473644964 1 SAGGS{M(Oxidation (M))|F}TVR 9 9 59.959 0 0 5.483 0 0 213.0979906161977 0 213.0979906161977 0 33.32773124424534 0 0 0 0 0 0.5 0 SAGGS{M(Oxidation (M))|F}TVR 5.483 - 130 + NaN NaN 96327.8 NaN 2956 1907 4863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4866 31.917 NaN 89598 35 0 11656 0.263 + 10362 IMADIRAQYE 10 40 403.86917105857924 1208.5856837759377 3 404.2154846191406 MULTI HCD FTMS 0 0 0 4863 9367.5556640625 0.6300997846499221 2 -0.04003334045410156 3 Unmodified _IMADIRAQYE_ CON__P05784 3.072263186857199 0.4590417271953214 1 ED 2 9 27.959 0 0 2.3133 0 0 0 961.4457175561172 961.4457175561172 24.85985638199878 0 0 0 0 0.5 0 0.5 0 ED 2.3133 - 9 + NaN NaN 105728.5 NaN 2957 1907 4863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4867 31.92 NaN 30028 35 0 4270.5 0.261 + 13946 KYREYNRAVL 10 27 437.91029617212195 1310.7090591165659 3 437.9103698730469 MULTI HCD FTMS 0 0 0 4863 7784.4111328125 0.6750282375452906 4 -0.07998275756835938 4 Unmodified _KYREYNRAVL_ REV__ENSG00000124160|ENST00000290231|NCOA5 0.5631705045366581 0.4723227536457635 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84043.7 NaN 2958 1907 4863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4868 31.923 NaN 12833 35 0 3671.1 0.261 -1 HFLCFMFYL 9 11 639.2953106677502 1276.5760684023003 2 639.7969970703125 MULTI HCD FTMS 0 0 0 4863 8985.947265625 0.6569343169917388 34 -0.7595443725585938 5 Carbamidomethyl (C) _HFLC(Carbamidomethyl (C))FMFYL_ ENST00000537473.2_1_12:57059942-57081218:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91465.3 NaN 2959 1907 4863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4870 31.929 NaN 123330 35 0 11676 0.327 + 25063 SAASEQHVF 9 43 488.2302764017691 974.4459998703383 2 488.2301025390625 MULTI HCD FTMS 0 0 0 4869 68810.6640625 0.8204923047915867 3 -0.05995941162109375 1 Unmodified _SAASEQHVF_ ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 41.95555342248728 0.056367691549927025 1 {[SA]|[TG]}ASEQ[HV]{M(Oxidation (M))|F} 9 0 + 51.379 0 0 5.2726 5.2726 86.708 0 0 0 30.894484365698744 9.933787369250169 9.933787369250169 9.208187539523749 0 1.9489700043360187 0 0.3807196863200844 0 + + {[SA]|[TG]}ASEQ[HV]{M(Oxidation (M))|F};{[SA]|[TG]}ASE[AG][HV]{M(Oxidation (M))|F};[PS]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[NV]|[RG]}S[NP] 5.2726;4.3277;0.63176 +;-;- + 120 + NaN NaN 100001.7 NaN 2960 1908 4869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4871 31.933 NaN 89199 35 0 30213 0.261 + 9303 HPQEENEPSL 10 24 590.2675834773363 1178.5206140214725 2 590.2675170898438 MULTI HCD FTMS 0 0 0 4869 52109.41796875 0.8906747102405207 -2 0.04004478454589844 2 Unmodified _HPQEENEPSL_ ENSG00000137275|ENST00000259808|RIPK1;nc|ENSG00000137275|Q13546-2|RIPK1 16.149105407346934 0.3600587335443843 1 YE[PS]{I|L} 5 6 35.713 0 0 3.0304 0 0 571.2518788068375 0 571.2518788068375 0 31.73393743112328 0 0 0 0.5 0 0.8494850021680094 0 YE[PS]{I|L} 3.0304 - 7 NaN NaN 94431.3 NaN 2961 1908 4869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4872 31.937 NaN 67021 35 0 5619.2 0.264 -1 RYQEMIQKL 9 43 408.8849327191074 1223.6329687575221 3 408.8848876953125 MULTI HCD FTMS 0 0 0 4869 25309.82421875 0.7770065452333673 -5 0.1201171875 3 Oxidation (M) _RYQEM(Oxidation (M))IQKL_ ENSG00000151466|ENST00000281142|SCLT1;ENST00000502495.1_1_4:129805634-129873545:-|nuORF 17.86316937532769 0.20602251856053128 1 E{M(Oxidation (M))|F}{I|L}QK{I|L} 6 -1 30.406 0 0 2.4849 0 0 447.22310073066564 0 447.22310073066564 0 25.80198135264581 0 0 0 1.0484550065040281 0 0 0 E{M(Oxidation (M))|F}{I|L}QK{I|L} 2.4849 + + 32 NaN NaN 97973.2 NaN 2962 1908 4869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4873 31.94 NaN 128910 35 0 16646 0.261 + 1802 CNYHLTYT 8 48 507.7193569298482 NaN 0 507.7044677734375 PEAK HCD FTMS 0 0 0 4869 1556.3846435546875 0.3717936418196203 -1 0.020023345947265625 4 Unmodified _CNYHLTYT_ ENSG00000038427|ENST00000265077|VCAN;ENST00000505615.1_1_5:82849283-82876028:+|nuORF;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN;nc|ENSG00000038427|P13611-5|VCAN 5.230669730166228 0.38822285293237185 1 Q 1 8 5.4846 0 0 0.54119 0 0 164.00211610403386 718.3352144830686 882.3373305871025 0 0 0 0 0 0 0 0 0 Q 0.54119 - 6 + NaN NaN 103626.1 NaN 2963 1908 4869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4874 31.943 NaN 23300 35 0 4125.4 0.261 -1 CLWLVLACW 9 18 582.2881352809618 NaN 0 582.2883911132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _CLWLVLAC(Carbamidomethyl (C))W_ ENSG00000182652|ENST00000642117|OR4Q3;nc|ENSG00000182652|Q8NH05|OR4Q3 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87471.7 NaN 2964 1908 4869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4876 31.949 NaN 1141300 35 0 242430 0.327 + 670 APQPTEERL 9 76 520.7721384132948 1039.5297238933895 2 520.7720947265625 MULTI HCD FTMS 0 0 0 4875 563108.9375 0.733279568816059 -3 0.060054779052734375 1 Unmodified _APQPTEERL_ ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN 88.36371040165146 0.004568843997105255 1 APQPTEER{I|L} 9 0 + 94.338 0 0 9.075 9.075 93.061 0 0 0 68.60256227556735 8.697114610913488 8.697114610913488 9.208187539523749 0 2.2104093769761874 0 1.809894379144197 0.7302046884880937 + + APQPTEER{I|L};AP[AG]PTEER{I|L};[PA]GAPTEER{I|L};AP{[QD]|[EN]|[WG]|[KD]|[RS]}[DP]ER{I|L};[PA]QPTEER{I|L};[QP]APTEER{I|L};[VS]QP[DP]ER{I|L};{I|L}[NS]P[DP]ER{I|L};[KG]EP[DP]ER{I|L};APQ[Q{I|L}][Q{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]} 9.075;8.1892;4.4328;4.4013;3.8044;3.7087;3.367;3.1074;2.908;2.6645 +;-;-;-;+;-;-;-;-;- + 475 + NaN NaN 247277.8 NaN 2965 1909 4875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4877 31.953 NaN 440020 35 0 46912 0.261 + 25074 SADMSHVAL 9 60 473.71872724251125 945.4229015518225 2 473.7185363769531 MULTI HCD FTMS 0 0 0 4875 365045.15625 0.9419150586410702 1 -0.019971847534179688 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 128.3654064809346 0.00070410514679239 1 {[SA]|[TG]}D{M(Oxidation (M))|F}SHVA{I|L} 9 0 + 92.177 0 0 9.7498 9.7498 94.821 0 0 0 10.796896906561031 10.796896906561031 10.796896906561031 10.796896906561031 0 2.5994850021680094 1.3010299956639813 1.360924374808178 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}SHVA{I|L};SAD{M(Oxidation (M))|F}SHVA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]SA{I|L} 9.7498;8.6078;6.7567 +;+;- + 98 NaN NaN 150393.1 NaN 2966 1909 4875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4878 31.957 NaN 130610 35 0 14592 0.261 + 34661 YPSQDNDRL 9 45 554.2568338767459 1106.4991148202917 2 554.2568359375 MULTI HCD FTMS 0 0 0 4875 70814.359375 0.9566295356257575 4 -0.09659004211425781 3 Unmodified _YPSQDNDRL_ ENSG00000146070|ENST00000274793|PLA2G7 38.61474834105838 0.07170385841135779 1 YPSQD[DN][R{I|L}] 9 0 + 66.379 0 0 5.999 5.999 86.405 0 0 0 51.77494066097715 4.167724800373449 4.167724800373449 7.5 0 1.1747425010840047 1.5228787452803376 0.3807196863200844 0.2742275032520141 + + YPSQD[DN][R{I|L}];YPSQD[KQ]{[QN]|[E{I|L}]|[KN]};YPS[AG]D[DN][R{I|L}];YPS[AG]D[KQ]{[QN]|[E{I|L}]|[KN]} 5.999;5.3212;5.1668;4.489 +;-;-;- + 61 + NaN NaN 99111.8 NaN 2967 1909 4875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4879 31.96 NaN 131520 35 0 25652 0.261 -1 KYLEERAMRQF 11 33 496.25381801751394 1485.739624652742 3 496.2537536621094 MULTI HCD FTMS 0 0 0 4875 39114.8359375 0.766015478665676 4 -0.09659004211425781 4 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5575567873354 1191.5575567873354 10.484550065040281 0 0 0 0 0 0 0 0 KY 1.4114 + + 10 + NaN NaN 120820.4 NaN 2968 1909 4875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4880 31.963 NaN 45636 35 0 4593.5 0.261 + -1 QYRELMQKL 9 23 612.8245339158653 1223.6345148985306 2 613.3256225585938 MULTI HCD FTMS 0 0 0 4875 7904.978515625 0.7010786274074549 -1 0.020009994506835938 5 Oxidation (M) _QYRELM(Oxidation (M))QKL_ REV__chr3:119173638-119175998|196|39.35|0.61|6.01|+|ENST00000479520|UPK1B,UPK1B;REV__chr3:119173638-119186679|132|11.14|0.12|6.56|+|ENST00000494855|UPK1B,UPK1B;REV__chr3:119173638-119187775|155|19.95|0.21|6.6|+|ENST00000497685|UPK1B,UPK1B;REV__chr3:119176109-119186714|204|38.14|0.71|5.75|+|ENST00000479520|UPK1B,UPK1B;REV__ENSG00000114638|ENST00000264234|UPK1B 1.4819007175156935 0.3397831423917744 1 Q[K{I|L}] 3 -1 7.4473 0 0 0.60862 0 0 836.3859730451187 0 836.3859730451187 0 7.447274948966937 0 0 0 0 0 0 0 Q[K{I|L}] 0.60862 + + 3 NaN NaN 101877.6 NaN 2969 1909 4875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4882 31.969 NaN 640510 35 0 102170 0.327 -1 RYSSMAASF 9 57 518.2320616715825 1034.449570409965 2 518.232177734375 MULTI HCD FTMS 0 0 0 4881 340208.34375 0.837775802275477 -8 0.18680381774902344 1 Oxidation (M) _RYSSM(Oxidation (M))AASF_ ENSG00000162366|ENST00000294338|PDZK1IP1 59.368380827593164 0.01846506874148156 1 [YR]SS{M(Oxidation (M))|F}AAS{M(Oxidation (M))|F} 9 -1 + 63.421 0 0 6.1309 6.1309 92.157 0 0 0 0.2675726282561186 33.728269624704694 0.2675726282561186 31.46591250700361 0 1.6989700043360187 0 0.4247425010840047 0 [YR]SS{M(Oxidation (M))|F}AAS{M(Oxidation (M))|F};[YR]SS{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F} 6.1309;3.0891 +;- + 328 NaN NaN 191006.3 NaN 2970 1910 4881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4883 31.973 NaN 64768 35 0 10554 0.261 + 28602 TQIDNNNL 8 36 466.2275041288264 930.4404553244528 2 466.22747802734375 MULTI HCD FTMS 0 0 0 4881 35707.96484375 0.1049036545774668 8 -0.20317840576171875 2 Unmodified _TQIDNNNL_ REV__ENSG00000206422|ENST00000383467|LRRC30 3.944395688203298 0.5361403129012058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83235.4 NaN 2971 1910 4881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4884 31.977 NaN 55812 35 0 12576 0.261 -1 LPTENVDKM 9 24 531.7604395501136 1061.506326167027 2 531.7606201171875 MULTI HCD FTMS 0 0 0 4881 24008.765625 0.6458006186032579 -3 0.06000518798828125 3 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 9.5439744041441 0.27789851728676895 1 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 3 -1 23.188 0 0 2.1844 0 0 621.2807484357437 0 621.2807484357437 0 2.2184874961635614 0 0 0 0 0 0 0 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.1844 - 7 NaN NaN 95089 NaN 2972 1910 4881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4885 31.98 NaN 26067 35 0 6283.4 0.261 + 22075 QHKILTSSDS 10 19 558.2879784137358 NaN 0 558.2882080078125 PEAK HCD FTMS 0 0 0 4881 7183.5712890625 0.5458519684310172 3 -0.07661819458007812 4 Unmodified _QHKILTSSDS_ REV__ENSG00000196391|ENST00000354377|ZNF774 1.4819007175156935 0.33891598740166873 1 A 1 -1 6.9897 0 0 0.62713 0 0 215.160355165559 825.3387545221311 1040.4991096876902 0 0 0 0 0 0 0 0 0 A 0.62713 - 5 + NaN NaN 83745.5 NaN 2973 1910 4881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4886 31.983 NaN 20391 35 0 3453.6 0.261 + 29324 TYNQHYNNL 9 21 583.7649625998722 1165.5153722665443 2 583.7643432617188 MULTI HCD FTMS 0 0 0 4881 1972.575439453125 0.10068073180943646 -5 0.10339546203613281 5 Unmodified _TYNQHYNNL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93051.8 NaN 2974 1910 4881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4888 31.989 NaN 663200 35 0 214610 0.326 + 18799 NADPQAVTM 9 48 481.71612515155437 961.4176973699088 2 481.71588134765625 MULTI HCD FTMS 0 0 0 4887 363621.5 0.25273172699011426 -10 0.22356414794921875 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 90.13494162714682 0.004522430935000059 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 86.934 0 0 9.0422 9.0422 98.564 0 0 0 0.5803717656404217 0.5803717656404217 0.5803717656404217 86.93365630477992 0 2.774227503252014 0.9208187539523752 0 1.110924374808178 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9.0422 + + 106 NaN NaN 175936.5 NaN 2975 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4889 31.993 NaN 331110 35 0 62555 0.261 -1 MGHSATPEL 9 43 500.7238645971688 999.4331762611376 2 500.7239074707031 MULTI HCD FTMS 0 0 0 4887 159363.109375 0.7968028478296127 2 -0.056640625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 32.30548876998284 0.10066689432505688 1 [{M(Oxidation (M))|F}E][HQ][TP]E{I|L} 8 -1 + 29.627 0 0 2.9643 2.9643 82.441 0 0 0 0.1625748220535428 13.59575616836501 0.1625748220535428 7.754537344402905 0 0.9247425010840047 0 0.8494850021680094 0 [{M(Oxidation (M))|F}E][HQ][TP]E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}[WD]{M(Oxidation (M))|F}{I|L} 2.9643;2.1884 -;- 71 NaN NaN 128299.8 NaN 2976 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4890 31.997 NaN 110250 35 0 16554 0.261 + -1 MVLCNMNR 8 38 527.2375629978487 NaN 0 527.2510986328125 PEAK HCD FTMS 0 0 0 4887 7086.84228515625 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _MVLC(Carbamidomethyl (C))NM(Oxidation (M))NR_ REV__ENST00000302418.4_1_10:32320011-32320086:-|nuORF 6.354104778181461 0.38822285293237185 1 {I|L}S 2 -1 9.464 0 0 0.89922 0 0 230.08103049714447 619.2377413385374 849.3187718356819 0 0 0 0 0 0 0 0 0 {I|L}S 0.89922 - 17 + NaN NaN 105791.3 NaN 2977 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4891 32 NaN 67861 35 0 10489 0.261 + 22026 QGCWACLGF 9 32 492.7071996911429 983.3998464490858 2 492.70654296875 MULTI HCD FTMS 0 0 0 4887 29845.1328125 0.21384532847415666 -10 0.22356414794921875 4 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 1 {[QG]|[NA]}C 3 6 34.437 0 0 3.5018 0 0 0 692.2984102838499 692.2984102838499 6.918402966525576 0 0 0 0 1 1.6989700043360187 0 0 + {[QG]|[NA]}C 3.5018 + + 7 + NaN NaN 88020.1 NaN 2978 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4892 32.003 NaN 95159 35 0 20293 0.261 -1 HPTDVDYRVM 10 41 416.86057511967465 1247.559895959224 3 416.86065673828125 MULTI HCD FTMS 0 0 0 4887 17797.806640625 0.40967616866013684 8 -0.20987319946289062 5 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 18.721224879955976 0.3359999958351898 1 VWV{M(Oxidation (M))|F} 4 -1 35.918 0 0 2.879 0 0 698.304232972699 0 698.304232972699 0 28.927900303521312 0 0 0 1 0 0 0 VWV{M(Oxidation (M))|F} 2.879 - 33 + NaN NaN 111181.3 NaN 2979 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4893 32.007 NaN 27664 35 0 6688.8 0.261 + -1 LLHCVMQVM 9 19 573.7765767595887 1145.5386005859773 2 573.7763671875 MULTI HCD FTMS 0 0 0 4887 10454.986328125 0.6186755672899091 -3 0.05995941162109375 6 Carbamidomethyl (C),Oxidation (M) _LLHC(Carbamidomethyl (C))VMQVM(Oxidation (M))_ REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;REV__DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;REV__ENSG00000007174|ENST00000262442|DNAH9;REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 4.3292370932331545 0.3181982124262546 1 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.267 0 0 881.4213124005875 0 881.4213124005875 0 25.969100130080562 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.267 + + 3 NaN NaN 93719.9 NaN 2980 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4894 32.01 NaN 17085 35 0 2958 0.261 + 23505 RMYDLSYFA 9 19 583.2722399308473 NaN 0 583.2723999023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RMYDLSYFA_ REV__ENSG00000183087|ENST00000327773|GAS6;REV__ENST00000480426.5_1_13:114523839-114535869:-|nuORF;REV__ENST00000610073.1_1_13:114523839-114538639:-|nuORF;REV__nc|ENSG00000183087|Q14393-1|GAS6;REV__nc|ENSG00000183087|Q14393-3|GAS6;REV__nc|ENSG00000183087|Q14393-4|GAS6;REV__nc|ENSG00000183087|Q14393-5|GAS6 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85875.9 NaN 2981 1911 4887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4896 32.015 NaN 662170 35 0 96732 0.327 + 27805 TAVKNDYEM 9 67 535.7446452901495 1069.474737647099 2 535.7448120117188 MULTI HCD FTMS 0 0 0 4895 276961.25 1 0 0 1 Unmodified _TAVKNDYEM_ ENSG00000132383|ENST00000254719|RPA1 76.82478488871298 0.006879825292024087 1 [TA]VK[DN]YEM 9 0 + 51.155 0 0 4.7832 4.7832 90.286 0 0 0 26.379034430739026 11.439389643433628 11.439389643433628 39.06926918935653 0 2.110924374808178 1.3979400086720375 1.0994850021680094 0 + + [TA]VK[DN]YEM;[TA]V[MD]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YN] 4.7832;1.1301 +;- + 75 + NaN NaN 178873.1 NaN 2982 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4897 32.02 NaN 141750 35 0 21762 0.261 + 26016 SPEEKQEML 9 30 545.7579844750951 1089.50141601699 2 545.7579345703125 MULTI HCD FTMS 0 0 0 4895 90325.671875 0.4209313794771411 -3 0.06658744812011719 2 Unmodified _SPEEKQEML_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 39.212999716063884 0.06895754945631974 1 [PS]EEKQEM{I|L} 9 0 + 74.659 0 0 6.8525 6.8525 89.497 0 0 0 7.147642715192504 55.194634427571856 7.147642715192504 9.208187539523749 0 1.9247425010840047 0 0.3807196863200844 0 + + [PS]EEKQEM{I|L};[PS]EEK[AG]EM{I|L};[PS]EEK{[DA]|[EG]}AM{I|L};[PS]EAA{[QD]|[EN]|[WG]|[KD]|[RS]}EM{I|L} 6.8525;6.0074;5.7311;4.2184 +;-;-;- + 117 NaN NaN 100625.8 NaN 2983 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4898 32.023 NaN 88007 35 0 8818.6 0.261 -1 HPKCSKFSK 9 30 559.7932058426143 1117.5718587520284 2 560.2750854492188 MULTI HCD FTMS 0 0 0 4895 6946.7216796875 0.8309503842657959 -3 0.06658744812011719 3 Carbamidomethyl (C) _HPKC(Carbamidomethyl (C))SKFSK_ nc|ENSG00000110675|Q8N336-2|ELMOD1;nc|ENSG00000110675|Q8N336-3|ELMOD1 1.844237919475145 0.33703635659052655 1 T 1 -1 11.237 0 0 1.0055 0 0 148.14209579413745 865.359729619295 1013.5018254134325 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.0055 - 7 + NaN NaN 93609.2 NaN 2984 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4899 32.027 NaN 36046 35 0 7366.6 0.461 -1 HPTDVDYRVM 10 20 624.7877388852504 1247.5609248373007 2 624.7876586914062 MULTI HCD FTMS 0 0 0 4895 16980.58984375 0.49528175428981924 12 -0.33650970458984375 4 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 6.2057823575117 0.44245551207394906 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88739.4 NaN 2985 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4900 32.033 NaN 47689 35 0 4499.6 0.262 -1 TATEVDIKM 9 27 512.255020499493 1022.4954880657859 2 512.2546997070312 MULTI HCD FTMS 0 0 0 4895 21989.529296875 0.6372104219024037 3 -0.08336639404296875 5 Oxidation (M) _TATEVDIKM(Oxidation (M))_ ENSG00000177409|ENST00000318238|SAMD9L 31.26834338654808 0.10542797264966089 1 [TA]{[ET]|[MV]}VD{I|L}K{M(Oxidation (M))|F} 9 -1 + 51.929 0 0 5.0786 5.0786 91.265 0 0 0 41.47099695308839 14.973024840566467 14.973024840566467 51.928571858695136 0 0.8807196863200843 0 0.4247425010840047 0 [TA]{[ET]|[MV]}VD{I|L}K{M(Oxidation (M))|F} 5.0786 + + 44 + NaN NaN 96958.9 NaN 2986 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4901 32.037 NaN 33603 35 0 7047.5 0.261 + 33672 YKHKFFDF 8 19 566.2852714023413 1130.5559898714826 2 566.795654296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YKHKFFDF_ REV__ENSG00000134901|ENST00000376004|POGLUT2;REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89248.9 NaN 2987 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4902 32.04 NaN 15448 35 0 4439 0.261 -1 VCHFPCELAM 10 16 640.2671686292327 1278.5197843252654 2 640.2664794921875 MULTI HCD FTMS 0 0 0 4895 11071.341796875 0.7779163386766881 -1 0.026638031005859375 7 2 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))HFPC(Carbamidomethyl (C))ELAM(Oxidation (M))_ ENST00000585920.1_1_19:10271058-10273570:-|nuORF 1.4819007175156935 0.4674597685733628 1 A{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6401 0 0 1042.4332752912126 0 1042.4332752912126 0 20.969100130080562 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.6401 + + 1 NaN NaN 81494.6 NaN 2988 1912 4895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4904 32.045 NaN 187370 35 0 41183 0.327 + 575 APEERPAAL 9 45 477.2563105718249 952.4980682104498 2 477.25604248046875 MULTI HCD FTMS 0 0 0 4903 95697.640625 0.29018771032707663 6 -0.15323257446289062 1 Unmodified _APEERPAAL_ ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF 53.40400417844725 0.026808823219830042 1 [PA]EERAPA{I|L} 9 2 + 83.527 0 0 8.7693 8.7693 89.48 0 0 0 3.595756168365014 3.595756168365014 3.595756168365014 3.595756168365014 0 2.1989700043360187 1.6989700043360187 0.4247425010840047 0 [PA]EERAPA{I|L};APEERAPA{I|L} 8.7693;8.3918 -;- 118 NaN NaN 115572.4 NaN 2989 1913 4903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4905 32.05 NaN 227250 35 0 18450 0.261 + 22256 QPDDHAATTSL 11 47 578.267479439131 1154.5204059450618 2 578.267333984375 MULTI HCD FTMS 0 0 0 4903 113281.5078125 0.8916156345982973 -1 0.030002593994140625 2 Unmodified _QPDDHAATTSL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 26.268140514670165 0.22820724222159966 1 ATT{[TV]|[{I|L}S]} 5 6 24.666 0 0 2.1365 0 0 663.261355507365 0 663.261355507365 0 2.9833247972062793 0 0 0 0.3807196863200844 0 0.7302046884880937 0 + ATT{[TV]|[{I|L}S]} 2.1365 + + 125 + NaN NaN 126669.8 NaN 2990 1913 4903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4906 32.053 NaN 125100 35 0 11963 0.261 + 25667 SHTNQILEL 9 44 527.7798497318211 1053.545146530442 2 527.7797241210938 MULTI HCD FTMS 0 0 0 4903 54509.28515625 0.8609406753617639 -1 0.030002593994140625 3 Unmodified _SHTNQILEL_ REV__ENSG00000181555|ENST00000409792|SETD2;REV__ENST00000431180.5_1_3:47122459-47155398:-|nuORF 10.073929032068715 0.27331982688540024 1 W[KP]WW{I|L} 6 -1 7.8926 0 0 0.74915 0 0 139.06436354804845 0 139.06436354804845 0 2.4080374776506392 0 0 0 0 0 0 0.4247425010840047 W[KP]WW{I|L} 0.74915 - 20 NaN NaN 94415.2 NaN 2991 1913 4903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4907 32.057 NaN 109580 35 0 7091.3 0.262 + 12359 KNRNVIYEQL 10 47 426.23836410715313 1275.6932629216594 3 426.23834228515625 MULTI HCD FTMS 0 0 0 4903 40861.125 0.06078732932973903 15 -0.39315032958984375 4 Unmodified _KNRNVIYEQL_ REV__ENSG00000105127|ENST00000269701|AKAP8;REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF;REV__ENST00000598597.6_1_19:15465728-15479935:-|nuORF 5.047519993296601 0.4485863789024576 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3318 0 0 1110.6470725913844 0 1110.6470725913844 0 6.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3318 - 21 + NaN NaN 93423.1 NaN 2992 1913 4903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4908 32.06 NaN 23249 35 0 3970.2 0.261 + 356 AHDNVDRVTI 10 16 570.2938518458501 1138.5731507585 2 570.294189453125 MULTI HCD FTMS 0 0 0 4903 21596.279296875 0.022099191990195374 65 -1.5428009033203125 5 Unmodified _AHDNVDRVTI_ REV__ENSG00000166341|ENST00000299441|DCHS1 7.101721422024254 0.4377131641736035 1 [HA]D 3 -1 15.458 0 0 1.3576 0 0 0 812.4280489557249 812.4280489557249 15.45757490560675 0 0 0 0 0.5 0 0 0 [HA]D 1.3576 + + 2 + NaN NaN 85160.1 NaN 2993 1913 4903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4909 32.063 NaN 65635 35 0 8655.2 0.264 + 7338 FVCRVTLEDQ 10 45 403.86917105857924 1208.5856837759377 3 404.2157897949219 MULTI HCD FTMS 0 0 0 4903 1104.2916259765625 0.07427913328425159 7 -0.18989181518554688 6 Unmodified _FVCRVTLEDQ_ REV__ENSG00000173698|ENST00000379869|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-2|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-3|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-4|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-5|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-6|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-7|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-8|ADGRG2;REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2 2.0860074813731053 0.46426213543441425 1 KK{M(Oxidation (M))|F} 3 -1 2.6761 0 0 0.22142 0 0 0 802.3483540242377 802.3483540242377 2.676062401770311 0 0 0 0 0 0 0 0 KK{M(Oxidation (M))|F} 0.22142 - 4 NaN NaN 92417.6 NaN 2994 1913 4903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4911 32.069 NaN 166730 35 0 32092 0.327 + 9686 HVTQEDFEM 9 40 576.2374894889024 1150.4604260446047 2 576.2374877929688 MULTI HCD FTMS 0 0 0 4910 95782.4453125 0.2712871454071217 7 -0.19647216796875 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 80.6760300276096 0.005633624786464751 1 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 85.94 0 0 7.4701 7.4701 90.631 0 0 0 7.147642715192504 16.180540824916392 7.147642715192504 9.208187539523749 0 2.7302046884880937 0 1.305462187404089 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[DP][RP]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7.4701;6.6697;5.8746 +;-;- + 122 + NaN NaN 103531.3 NaN 2995 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4912 32.073 NaN 154820 35 0 19688 0.262 + 15950 LPPPHQPQ 8 49 457.24811453014297 912.481676127086 2 457.2479553222656 MULTI HCD FTMS 0 0 0 4910 86613.5078125 0.40689784085041775 -3 0.08005142211914062 2 Unmodified _LPPPHQPQ_ ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF 13.50788311687929 0.4944073034352369 1 VN 2 8 41.211 0 0 4.5164 0 0 0 696.3483370416624 696.3483370416624 12.054687406276017 0 0 0 0 0.3252574989159953 1.6989700043360187 0 0 VN 4.5164 - 34 + NaN NaN 105382 NaN 2996 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4913 32.077 NaN 178070 35 0 31314 0.261 + -1 QDDCHHGM 8 45 508.17176229240647 1014.328971651613 2 508.17156982421875 MULTI HCD FTMS 0 0 0 4910 60134.7109375 0.5201494620572846 -8 0.1800556182861328 3 Carbamidomethyl (C),Oxidation (M) _QDDC(Carbamidomethyl (C))HHGM(Oxidation (M))_ REV__ENST00000514567.5_1_5:145883057-145883965:+|nuORF 0.7936320650641473 0.540814922690045 1 T{M(Oxidation (M))|F} 2 -1 18.227 0 0 1.7969 0 0 748.2363030498536 0 748.2363030498536 0 15.127881306118454 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 1.7969 - 9 + NaN NaN 106543.5 NaN 2997 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4914 32.08 NaN 189590 35 0 45022 0.261 + 12919 KYGPIRQI 8 46 487.7927041592159 973.5708553852318 2 487.7924499511719 MULTI HCD FTMS 0 0 0 4910 78950.375 0.4384077288777595 -3 0.08005142211914062 4 Unmodified _KYGPIRQI_ ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF 12.531546534597751 0.5015908124873912 1 KYG 3 5 30.445 0 0 3.1272 0 0 0 622.3681734674436 622.3681734674436 24.960762528683702 0 0 0 0 0.4247425010840047 0 0 0 + KYG 3.1272 + + 14 + NaN NaN 116052.7 NaN 2998 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4915 32.083 NaN 59638 35 0 21894 0.261 + 19055 NEEQPHELSP 10 13 590.2675834773363 1178.5206140214725 2 590.2675170898438 MULTI HCD FTMS 0 0 0 4910 32819.30078125 0.560960424297319 4 -0.1031494140625 5 Unmodified _NEEQPHELSP_ REV__ENSG00000137275|ENST00000259808|RIPK1;REV__nc|ENSG00000137275|Q13546-2|RIPK1 3.2813086475875832 0.45793521633868084 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85712.2 NaN 2999 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4916 32.087 NaN 62771 35 0 8952.2 0.261 + 29949 VFGDGDNDIR 10 30 554.2568338767459 1106.4991148202917 2 554.257080078125 MULTI HCD FTMS 0 0 0 4910 26323.5859375 0.35560471087570783 9 -0.24982452392578125 6 Unmodified _VFGDGDNDIR_ REV__ENSG00000049449|ENST00000054950|RCN1;REV__nc|ENSG00000049449|Q15293-2|RCN1 5.731851221503515 0.44496410492002586 1 YP 2 -1 19.464 0 0 1.7591 0 0 0 843.3601168268186 843.3601168268186 12.474250108400469 0 0 0 0 0 0 0 0 YP 1.7591 - 6 + NaN NaN 90136.2 NaN 3000 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4917 32.09 NaN 35850 35 0 4872 0.261 + 33463 YHFYDAYA 8 28 525.2210799599217 1048.4276069866432 2 525.221435546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YHFYDAYA_ REV__tr|U7SEM2|U7SEM2_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02350PE=4SV=1 5.230669730166228 0.5342319408533849 1 A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3 -1 15.458 0 0 1.4744 0 0 725.2867298810562 0 725.2867298810562 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.4744 + + 2 NaN NaN 81157.2 NaN 3001 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4918 32.093 NaN 9703.7 35 0 3052 0.261 + -1 SCQLWTRWQ 9 9 632.7987670898438 NaN 0 632.7987670898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _SC(Carbamidomethyl (C))QLWTRWQ_ REV__ENSG00000225697|ENST00000395550|SLC26A6;REV__ENST00000482282.5_1_3:48670520-48671236:-|nuORF;REV__ENST00000489483.5_1_3:48670389-48671049:-|nuORF;REV__nc|ENSG00000225697|Q9BXS9-2|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-3|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-4|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-6|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81838 NaN 3002 1914 4910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4920 32.099 NaN 862400 35 0 168780 0.327 + 671 APQPTEERL 9 67 520.7721384132948 1039.5297238933895 2 520.772216796875 MULTI HCD FTMS 0 0 0 4919 414649.09375 0.5399553948208639 3 -0.0731964111328125 1 Unmodified _APQPTEERL_ ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN 59.05245873256422 0.018907022117377846 1 APQPTEER{I|L} 9 0 + 82.379 0 0 7.9246 7.9246 91.319 0 0 0 63.79522684537987 9.137342758552691 9.137342758552691 9.208187539523749 0 2.004432191740108 0 1.1694451763165201 0.3807196863200844 + + APQPTEER{I|L};AP[AG]PTEER{I|L};APQP{[VA]|[{I|L}G]}[KS]{[QD]|[EN]|[WG]|[KD]|[RS]};[DP]PE[KG]ER{I|L} 7.9246;7.0388;3.0634;1.8357 +;-;-;- + 255 + NaN NaN 211825.4 NaN 3003 1915 4919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4921 32.103 NaN 107270 35 0 12629 0.261 -1 SADMSHVAL 9 33 473.71872724251125 945.4229015518225 2 473.7185974121094 MULTI HCD FTMS 0 0 0 4919 79326.40625 0.20468354480392892 7 -0.1998443603515625 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 24.020572477871973 0.15282392193088168 1 VA{I|L} 3 -1 28.188 0 0 2.9815 0 0 644.2227650373062 0 644.2227650373062 0 9.675390846596482 0 0 0 0.5 0 0 0 VA{I|L} 2.9815 + + 9 NaN NaN 94179.5 NaN 3004 1915 4919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4922 32.107 NaN 111550 35 0 13598 0.261 + 3338 EELGHTETY 9 34 539.7380580723333 1077.4615632114665 2 539.73779296875 MULTI HCD FTMS 0 0 0 4919 30583.73828125 1 0 0 3 Unmodified _EELGHTETY_ ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2 11.640296217721598 0.25978676193971967 1 TY 2 7 23.271 0 0 2.1598 0 0 795.3405132620509 0 795.3405132620509 0 8.566147098514703 0 0 0 0.3807196863200844 0 0 0 + TY 2.1598 + + 8 + NaN NaN 98054.4 NaN 3005 1915 4919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4923 32.11 NaN 16363 35 0 4733.4 0.261 + -1 PMFIGLTRML 10 16 605.820068359375 NaN 0 605.820068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _PM(Oxidation (M))FIGLTRM(Oxidation (M))L_ REV__ENST00000323011.7_1_18:63476946-63481738:+|nuORF 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84716.7 NaN 3006 1915 4919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4924 32.113 NaN 36526 35 0 9532 0.261 -1 YHPNFWMD 8 25 563.225341796875 NaN 0 563.225341796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _YHPNFWM(Oxidation (M))D_ ENSG00000113263|ENST00000422843|ITK;ENST00000519402.5_1_5:156607865-156667213:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97783.6 NaN 3007 1915 4919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4926 32.119 NaN 1859900 35 0 574750 0.327 + 18800 NADPQAVTM 9 60 481.71612515155437 961.4176973699088 2 481.71612548828125 MULTI HCD FTMS 0 0 0 4925 1041315.4375 0.7237565679170275 -5 0.12999725341796875 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 148.26817274609934 1.0657023776783114E-05 1 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 104.73 0 0 10.894 10.894 95.825 0 0 0 4.661903266879719 4.661903266879719 4.661903266879719 12.26280941356464 0 2.8494850021680094 1.154901959985743 1.4802046884880937 0.3054621874040891 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]NAVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]GGAVT{M(Oxidation (M))|F};{[QG]|[NA]}DPN[{I|L}A]T{M(Oxidation (M))|F};[QP]{[DA]|[EG]}NAVT{M(Oxidation (M))|F};{[QG]|[NA]}DPGG[{I|L}A]T{M(Oxidation (M))|F};[QP]{[DA]|[EG]}GGAVT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}YAN[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}YAGG[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F} 10.894;9.6181;9.0555;8.0977;7.0686;6.5202;5.7931;5.5624;4.2285;2.8691 +;-;-;-;-;-;-;-;-;- + 468 + NaN NaN 357717.9 NaN 3008 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4927 32.123 NaN 1547300 35 0 398300 0.261 + 12975 KYIHSANVL 9 83 522.7952755061955 1043.5759980791909 2 522.7951049804688 MULTI HCD FTMS 0 0 0 4925 762417.5625 0.8247760997854404 -2 0.049945831298828125 2 Unmodified _KYIHSANVL_ ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;ENSG00000141639|ENST00000400384|MAPK4;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 121.34585337138759 0.001129813327125052 1 [YK]{I|L}HSANV{I|L} 9 0 + 92.092 0 0 8.8247 8.8247 92.734 0 0 0 10.756886463274284 45.651596363009915 10.756886463274284 9.208187539523749 0 2.3169015600442577 0 0.9802046884880937 1.4049471895720984 + + [YK]{I|L}HSANV{I|L};[YK]{I|L}HSAGGV{I|L};[YK]{I|L}HSAN{I|L}V;[YK]{I|L}HSAGG{I|L}V;{[QN]|[E{I|L}]|[KN]}[W{I|L}]SANV{I|L};KY{I|L}HSANV{I|L};{[QN]|[E{I|L}]|[KN]}[W{I|L}]SAGGV{I|L};[{M(Oxidation (M))|F}V]P{[RE]|[WV]}ANV{I|L};KY{I|L}HSAGGV{I|L};[KG]{[SA]|[TG]}{[RE]|[WV]}ANV{I|L} 8.8247;7.9423;7.5945;6.7121;6.4121;6.0929;5.5298;5.4599;5.2105;5.2009 +;-;-;-;-;+;-;-;-;- + 2069 NaN NaN 311887.3 NaN 3009 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4928 32.127 NaN 693120 35 0 112230 0.261 + 24927 RYSSMAASF 9 57 518.2320616715825 1034.449570409965 2 518.2321166992188 MULTI HCD FTMS 0 0 0 4925 311711.34375 0.7676008713073288 -2 0.049945831298828125 3 Oxidation (M) _RYSSM(Oxidation (M))AASF_ ENSG00000162366|ENST00000294338|PDZK1IP1 59.368380827593164 0.01846506874148156 1 TSAA[MD]AAS{M(Oxidation (M))|F} 10 5 71.191 0 0 6.882 0 0 64.01718604066635 0 64.01718604066635 0 50.788435428722906 0 0 0 0 0 2.1549471895720984 0 TSAA[MD]AAS{M(Oxidation (M))|F} 6.882 - 442 + NaN NaN 185407 NaN 3010 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4929 32.13 NaN 175460 35 0 31251 0.262 + 25117 SAFKPGAH 8 55 407.71386111266037 NaN 0 407.7139587402344 PEAK HCD FTMS 0 0 0 4925 54284.21875 0.7121597183986671 -1 0.019992828369140625 4 Unmodified _SAFKPGAH_ REV__ENSG00000059573|ENST00000371224|ALDH18A1;REV__nc|ENSG00000059573|P54886-2|ALDH18A1 9.347437153973935 0.38822285293237185 1 N 1 -1 13.737 0 0 1.6888 0 0 541.3017323798146 155.04607568912346 696.347808068938 0 0 0 0 0 0.8252574989159953 0 0 0 N 1.6888 - 24 + NaN NaN 108159.4 NaN 3011 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4930 32.133 NaN 69749 35 0 8189.1 0.261 -1 FVDEHEPSM 9 31 553.726502855382 1105.438452777564 2 553.7266845703125 MULTI HCD FTMS 0 0 0 4925 21197.03125 0.5254423316670499 8 -0.23315048217773438 5 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 10.823927491677226 0.26684000660059787 1 C{NN|[MP]|[D{I|L}]|[EV]} 3 -1 15.458 0 0 1.3983 0 0 756.3070545880875 0 756.3070545880875 0 15.45757490560675 0 0 0 0.5 0 0 0 C{NN|[MP]|[D{I|L}]|[EV]} 1.3983 - 1 NaN NaN 90636.8 NaN 3012 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4931 32.137 NaN 40604 35 0 6882.9 0.261 -1 LPTENVDKM 9 18 531.7604395501136 1061.506326167027 2 531.7601928710938 MULTI HCD FTMS 0 0 0 4925 22602.72265625 0.6079801228233332 3 -0.07987594604492188 6 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 7.101721422024254 0.29718071671418667 1 {I|L}P 2 -1 20.969 0 0 1.9754 0 0 0 848.3485201471311 848.3485201471311 13.979400086720375 0 0 0 0 0 0 0 0 {I|L}P 1.9754 + + 2 + NaN NaN 84658.7 NaN 3013 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4932 32.14 NaN 126770 35 0 26738 0.261 + 2197 DIISSQQEIN 10 31 573.7858809131047 1145.5572088930094 2 573.7871704101562 MULTI HCD FTMS 0 0 0 4925 30356.255859375 0.2860723414791342 -4 0.10335922241210938 7 Unmodified _DIISSQQEIN_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 24.990960013464015 0.27735500881591096 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4 6 46.771 0 0 4.0828 0 0 0 714.3078552155281 714.3078552155281 35.53395642852614 0 0 0 0 1.5 1.6989700043360187 1 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4.0828 + + 14 NaN NaN 116253.5 NaN 3014 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4933 32.143 NaN 47992 35 0 12407 0.261 -1 KDGVMEMNS 9 20 513.7151402458435 1025.4157275584869 2 513.7149047851562 MULTI HCD FTMS 0 0 0 4925 14363.314453125 0.17654070418116752 44 -0.9964218139648438 8 Oxidation (M) _KDGVM(Oxidation (M))EMNS_ ENSG00000059804|ENST00000075120|SLC2A3;ENST00000469295.1_1_12:8074011-8075632:-|nuORF 5.731851221503515 0.3075653528928475 1 V 1 -1 11.99 0 0 1.1693 0 0 626.2042235075088 297.1200045221313 923.3242280296402 0 0 0 0 0 0.5 0 0 0 V 1.1693 + + 1 + NaN NaN 87551.2 NaN 3015 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4934 32.147 NaN 34226 35 0 3703.9 0.261 + 29325 TYNQHYNNL 9 24 583.7649625998722 1165.5153722665443 2 583.7652587890625 MULTI HCD FTMS 0 0 0 4925 16711.162109375 0.8529417921904439 1 -0.033233642578125 9 Unmodified _TYNQHYNNL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 6.2057823575117 0.30397260197431997 1 N{I|L} 2 7 19.464 0 0 1.67 0 0 920.3720570294937 0 920.3720570294937 0 19.463950151760656 0 0 0 0 0 0 0 + N{I|L} 1.67 + + 2 NaN NaN 94255.8 NaN 3016 1916 4925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4936 32.152 NaN 186470 35 0 27224 0.327 + 18942 NAFSMFMH 8 45 492.7071996911429 983.3998464490858 2 492.7071838378906 MULTI HCD FTMS 0 0 0 4935 105530.7265625 0.7561451653658718 -4 0.10659027099609375 1 Unmodified _NAFSMFMH_ ENST00000298125.6_1_13:52158687-52249327:+|nuORF 19.438996006549623 0.45076845602799126 1 NADSA 5 5 69.085 0 0 7.0252 0 0 0 522.1972750299436 522.1972750299436 45.37401551688937 0 0 0 0 1.6861818737241734 1.5228787452803376 0.3807196863200844 0 NADSA 7.0252 - 106 + NaN NaN 116179.8 NaN 3017 1917 4935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4937 32.156 NaN 110300 35 0 11989 0.261 -1 MGHSATPEL 9 35 500.7238645971688 999.4331762611376 2 500.7237854003906 MULTI HCD FTMS 0 0 0 4935 42398.46484375 0.2119889456449288 8 -0.22322463989257812 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 10.823927491677226 0.26684000660059787 1 E{I|L} 2 -1 23.711 0 0 2.3725 0 0 739.2963910201883 0 739.2963910201883 0 19.10728139283883 0 0 0 0 0 0.4247425010840047 0 E{I|L} 2.3725 + + 4 NaN NaN 102782.6 NaN 3018 1917 4935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4938 32.16 NaN 125420 35 0 23673 0.261 + 16060 LPSNDSSKF 9 48 497.7454556927701 993.4763584523403 2 497.7454528808594 MULTI HCD FTMS 0 0 0 4935 62610.94921875 0.7646074368081772 -3 0.08317947387695312 3 Unmodified _LPSNDSSKF_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 47.7319792270244 0.034743597693959835 1 {I|L}PSNDSSK{M(Oxidation (M))|F} 9 0 + 51.442 0 0 5.178 5.178 86.543 0 0 0 26.6482846226927 9.274940660977151 9.274940660977151 9.208187539523749 0 1.5924778212679485 0 0.4247425010840047 0 + + {I|L}PSNDSSK{M(Oxidation (M))|F};{I|L}PSGGDSSK{M(Oxidation (M))|F} 5.178;4.2511 +;- + 65 + NaN NaN 97268.7 NaN 3019 1917 4935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4939 32.163 NaN 21502 35 0 6025 0.261 -1 IHCPNMTWM 9 20 582.7366302567852 1163.4587075803704 2 582.7366943359375 MULTI HCD FTMS 0 0 0 4935 8603.439453125 0.534996748696989 1 -0.019969940185546875 4 2 Oxidation (M) _IHCPNM(Oxidation (M))TWM(Oxidation (M))_ AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant;ENSG00000116748|ENST00000520113|AMPD1;nc|ENSG00000116748|P23109-2|AMPD1 1.6526216038709556 0.33848895094777925 1 {I|L}PV 3 -1 26.198 0 0 2.2517 0 0 0 851.2306002252561 851.2306002252561 19.20818753952375 0 0 0 0 0 0 0 0 {I|L}PV 2.2517 - 4 + NaN NaN 90584 NaN 3020 1917 4935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4940 32.167 NaN 37559 35 0 9717.8 0.261 + -1 CICMGGVSID 10 24 556.2325531440304 1110.4505533548606 2 556.232666015625 MULTI HCD FTMS 0 0 0 4935 4492.9033203125 0.2836940977350512 8 -0.22322463989257812 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))IC(Carbamidomethyl (C))MGGVSID_ REV__ENSG00000101680|ENST00000389658|LAMA1;REV__ENSG00000196569|ENST00000421865|LAMA2;REV__ENST00000579014.5_1_18:7043201-7117719:-|nuORF;REV__LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant 1.4819007175156935 0.4674597685733628 1 G 1 -1 0.9691 0 0 0.087271 0 0 564.1803029659919 486.22617517642817 1050.4064781424202 0 0 0 0 0 0 0 0 0 G 0.087271 + + 1 + NaN NaN 104355 NaN 3021 1917 4935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4942 32.172 NaN 222820 35 0 27804 0.327 + 26017 SPEEKQEML 9 58 545.7579844750951 1089.50141601699 2 545.7578735351562 MULTI HCD FTMS 0 0 0 4941 118558.6875 0.5525015296585557 3 -0.09332275390625 1 Unmodified _SPEEKQEML_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 69.33821966488729 0.009302356455414924 1 [PS]EEKQEM{I|L} 9 0 + 86.161 0 0 7.9083 7.9083 91.965 0 0 0 7.147642715192518 67.57766513495953 7.147642715192518 9.208187539523763 0 1.8807196863200843 0 1.0010912013506126 0.75 + + [PS]EEKQEM{I|L};[PS]EEK[AG]EM{I|L};[PS]EEK{[DA]|[EG]}AM{I|L};[PS]E{[VA]|[{I|L}G]}SQEM{I|L};[PS]ET[VG]QEM{I|L};[PS]EAA{[QD]|[EN]|[WG]|[KD]|[RS]}EM{I|L};EE[PS]KQEM{I|L};[PS]E{[VA]|[{I|L}G]}S[AG]EM{I|L};[PS]ET[VG][AG]EM{I|L};EE[PS]K[AG]EM{I|L} 7.9083;7.0631;6.7868;5.9933;5.9463;5.3774;5.0973;4.4637;4.4168;4.2521 +;-;-;-;-;-;-;-;-;- + 418 NaN NaN 129728.1 NaN 3022 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4943 32.176 NaN 90985 35 0 8043.8 0.261 -1 LHMAFAEKR 9 33 559.7932058426143 1117.5718587520284 2 560.2747192382812 MULTI HCD FTMS 0 0 0 4941 4020.46875 0.4809189437529634 3 -0.09332275390625 2 Oxidation (M) _LHM(Oxidation (M))AFAEKR_ ENST00000521166.5_2_8:124821225-124822592:+|nuORF 4.75600775471527 0.31496297302216103 1 TAE 3 -1 24.297 0 0 2.1741 0 0 130.13207881332556 683.2914522760374 813.423531089363 0 0 0 0 0 0 0 1.3494850021680094 0 TAE 2.1741 - 15 + NaN NaN 98793.8 NaN 3023 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4944 32.18 NaN 84085 35 0 20436 0.263 -1 HPTDVDYRVM 10 36 416.86057511967465 1247.559895959224 3 416.86065673828125 MULTI HCD FTMS 0 0 0 4941 11168.64453125 0.2570837852707907 15 -0.3661918640136719 3 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 10.315234532428624 0.4146267933501748 1 VWV{M(Oxidation (M))|F} 4 -1 17.92 0 0 1.4364 0 0 698.3048433242615 0 698.3048433242615 0 10.841218823962109 0 0 0 0.9247425010840047 0 0 0 VWV{M(Oxidation (M))|F} 1.4364 - 21 + NaN NaN 89429.2 NaN 3024 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4945 32.183 NaN 48555 35 0 6885.7 0.261 + 25330 SDFCSRTSF 9 27 525.2210799599217 1048.4276069866432 2 525.2201538085938 MULTI HCD FTMS 0 0 0 4941 12456.3056640625 0.7403176470410701 1 -0.02667236328125 4 Unmodified _SDFCSRTSF_ REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF 5.731851221503515 0.3075653528928475 1 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.477 0 0 796.3181289655295 0 796.3181289655295 0 25.969100130080562 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.477 + + 5 NaN NaN 94746.9 NaN 3025 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4946 32.187 NaN 13209 35 0 4557.2 0.261 + -1 EAGYQEAEHVM 11 12 640.2671686292327 1278.5197843252654 2 640.2670288085938 MULTI HCD FTMS 0 0 0 4941 2145.4755859375 0.1507496149205523 5 -0.14667510986328125 5 Oxidation (M) _EAGYQEAEHVM(Oxidation (M))_ REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94686.8 NaN 3026 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4947 32.19 NaN 46318 35 0 4514.4 0.262 + 9275 HPNDDDVHF 9 36 548.228302940141 1094.442052947082 2 548.7987060546875 MULTI HCD FTMS 0 0 0 4941 10627.5546875 0.06036121407274493 62 -1.469573974609375 6 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 98016 NaN 3027 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4948 32.193 NaN 58098 35 0 9353.5 0.261 -1 0 30 469.32877273477493 468.32149626817494 1 469.3287048339844 MULTI HCD FTMS 0 0 0 4941 12152.642578125 0.6905599491071386 -20 0.4802074432373047 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.1184 0 0 303.27579421914993 0 303.27579421914993 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.1184 - 3 + NaN NaN 88970.5 NaN 3028 1918 4941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4950 32.199 NaN 137850 35 0 12038 0.327 + 9652 HVDENDVQTV 10 42 578.267479439131 1154.5204059450618 2 578.267578125 MULTI HCD FTMS 0 0 0 4949 65008.1796875 0.5116661183755415 5 -0.1532745361328125 1 Unmodified _HVDENDVQTV_ ENSG00000182095|ENST00000430969|TNRC18 6.2057823575117 0.44245551207394906 1 STT 3 9 26.427 0 0 2.289 0 0 148.12161575092574 714.2492159479124 862.3708316988382 0 0 0 0 0 0 0 1.2614393726401687 0 STT 2.289 - 54 + NaN NaN 96476.7 NaN 3029 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4951 32.203 NaN 66303 35 0 7373.6 0.261 + 22362 QPNGLNGLEL 10 44 527.7798497318211 1053.545146530442 2 527.7799072265625 MULTI HCD FTMS 0 0 0 4949 36438.0625 0.5755168142032988 5 -0.1532745361328125 2 Unmodified _QPNGLNGLEL_ REV__ENSG00000085840|ENST00000371568|ORC1 8.745405648335112 0.42901288225909884 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.29414 0 0 396.757256981417 506.7280367486938 903.4852937301108 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.29414 - 5 + NaN NaN 107805.6 NaN 3030 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4952 32.207 NaN 81134 35 0 7293.9 0.261 + 21967 QEPARAPAL 9 31 476.76455743109454 951.5145619289891 2 477.2567443847656 MULTI HCD FTMS 0 0 0 4949 4560.5078125 0.35065962117623806 -1 0.02667236328125 3 Unmodified _QEPARAPAL_ REV__ENSG00000167680|ENST00000586582|SEMA6B 4.3292370932331545 0.3181982124262546 1 A 1 -1 6.9897 0 0 0.73459 0 0 148.12374368162642 729.3357637994749 877.4595074811014 0 0 0 0 0 0 0 0 0 A 0.73459 + + 11 + NaN NaN 115599.3 NaN 3031 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4953 32.21 NaN 36539 35 0 5761.9 0.261 + 29327 TYNQKHSLF 9 19 569.2884010844098 1136.5622492356194 2 569.2880859375 MULTI HCD FTMS 0 0 0 4949 23850.603515625 0.8851134914492367 -2 0.046642303466796875 4 Unmodified _TYNQKHSLF_ ENSG00000165175|ENST00000614558|MID1IP1 13.90604991867851 0.24021115267848145 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 100183.6 NaN 3032 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4954 32.213 NaN 29015 35 0 4226.1 0.261 -1 MSSMEHTEEG 10 21 585.2082637804797 1168.4019746277593 2 585.2083129882812 MULTI HCD FTMS 0 0 0 4949 19010.263671875 0.9954804143618297 -2 0.046642303466796875 5 2 Oxidation (M) _M(Oxidation (M))SSM(Oxidation (M))EHTEEG_ ENSG00000141376|ENST00000407086|BCAS3;ENST00000585812.5_1_17:59431721-59456358:+|nuORF;ENST00000587294.5_1_17:59445549-59469483:+|nuORF;ENST00000592702.5_1_17:59431721-59469483:+|nuORF;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3 3.5964929083625545 0.45626689593999237 1 EM 2 -1 18.583 0 0 1.5905 0 0 890.3111439435562 0 890.3111439435562 0 3.878493940035453 0 0 0 0 0 0 0 EM 1.5905 - 3 NaN NaN 91995.7 NaN 3033 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4955 32.217 NaN 67835 35 0 6204.3 0.264 + -1 YKRDEYEKM 9 34 426.5324521436301 1276.5755270310904 3 426.53204345703125 MULTI HCD FTMS 0 0 0 4949 13726.939453125 0.284453643019348 41 -0.9165458679199219 6 Oxidation (M) _YKRDEYEKM(Oxidation (M))_ REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;REV__ENSG00000197653|ENST00000673944|DNAH10;REV__ENST00000467219.5_1_12:124265674-124298205:+|nuORF;REV__nc|ENSG00000197653|Q8IVF4-2|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 4.189502756095605 0.319257502753388 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7226 0 0 1111.5296113590184 0 1111.5296113590184 0 15 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7226 + + 2 + NaN NaN 101440.5 NaN 3034 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4956 32.22 NaN 18641 35 0 4512.4 0.261 -1 AFCLPPRPSS 10 10 566.2860717773438 NaN 0 566.2860717773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _AFC(Carbamidomethyl (C))LPPRPSS_ ENST00000405486.5_2_22:41681791-41681956:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85067.6 NaN 3035 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4957 32.223 NaN 68608 35 0 6067.9 0.261 + 8980 HPEAVQAHVL 10 33 550.7960013614057 1099.5774497896114 2 550.7957763671875 MULTI HCD FTMS 0 0 0 4949 10679.3896484375 0.4933952849838789 -2 0.046642303466796875 8 Unmodified _HPEAVQAHVL_ ENSG00000187024|ENST00000543175|PTRH1 5.731851221503515 0.44496410492002586 1 V{I|L} 2 8 20.969 0 0 1.907 0 0 869.4129591559935 0 869.4129591559935 0 18.979400086720375 0 0 0 0 0 0 0 + V{I|L} 1.907 + + 7 NaN NaN 96139.8 NaN 3036 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4958 32.227 NaN 14472 35 0 5493.7 0.261 + -1 YAKRMMLWM 9 12 639.2953106677502 1276.5760684023003 2 639.2947387695312 MULTI HCD FTMS 0 0 0 4949 2804.0546875 0.12205291728946689 43 -0.9665603637695312 9 3 Oxidation (M) _YAKRM(Oxidation (M))M(Oxidation (M))LWM(Oxidation (M))_ REV__ENSG00000171155|ENST00000304661|C1GALT1C1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83218.8 NaN 3037 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4959 32.23 NaN 36494 35 0 9150.6 0.261 + 28879 TVVYFKPAW 9 22 555.8023772444718 1109.5902015557435 2 555.8021850585938 MULTI HCD FTMS 0 0 0 4949 12390.1640625 0.55944673386568 -2 0.046642303466796875 10 Unmodified _TVVYFKPAW_ REV__ENSG00000170004|ENST00000330494|CHD3;REV__nc|ENSG00000170004|Q12873-2|CHD3;REV__nc|ENSG00000170004|Q12873-3|CHD3 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85724.1 NaN 3038 1919 4949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4961 32.235 NaN 281470 35 0 27943 0.327 + 30573 VNPPSFPR 8 66 457.24811453014297 912.481676127086 2 457.24810791015625 MULTI HCD FTMS 0 0 0 4960 170944.6875 0.8030736314152719 3 -0.083343505859375 1 Unmodified _VNPPSFPR_ REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF 16.942295170755138 0.46913822049235215 1 VNAS[R{I|L}]N 7 -1 63.478 0 0 6.9566 0 0 0 155.04604517154533 155.04604517154533 31.539391198391442 0 0 0 0 1.1861818737241734 2 0.5 0.3807196863200844 VNAS[R{I|L}]N 6.9566 - 360 + NaN NaN 129189.1 NaN 3039 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4962 32.24 NaN 183150 35 0 31797 0.261 + 12920 KYGPIRQI 8 38 487.7927041592159 973.5708553852318 2 487.7925109863281 MULTI HCD FTMS 0 0 0 4960 113515.0234375 0.6303436002519306 3 -0.083343505859375 2 Unmodified _KYGPIRQI_ ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF 21.74664581756881 0.4337896562907935 1 KYG 3 5 29.693 0 0 3.0499 0 0 0 622.3694480669246 622.3694480669246 24.20818753952375 0 0 0 0 0.3494850021680094 0 0 0 + KYG 3.0499 + + 10 + NaN NaN 110685.2 NaN 3040 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4963 32.243 NaN 311090 35 0 44753 0.261 + -1 QDDCHHGM 8 75 508.17176229240647 1014.328971651613 2 508.1716613769531 MULTI HCD FTMS 0 0 0 4960 101597.7421875 0.8787937968137476 -2 0.06333160400390625 3 Carbamidomethyl (C),Oxidation (M) _QDDC(Carbamidomethyl (C))HHGM(Oxidation (M))_ REV__ENST00000514567.5_1_5:145883057-145883965:+|nuORF 2.8892196856762586 0.5377058178582064 1 T{M(Oxidation (M))|F} 2 -1 20.701 0 0 2.0409 0 0 748.2363030498536 0 748.2363030498536 0 1.6600064438718896 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 2.0409 - 148 + NaN NaN 127094.6 NaN 3041 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4964 32.247 NaN 114400 35 0 18876 0.261 -1 AVTDAIMSR 9 37 490.2476932176287 978.4808335020574 2 490.24755859375 MULTI HCD FTMS 0 0 0 4960 27388.19140625 0.8472223934056751 1 -0.02999114990234375 4 Oxidation (M) _AVTDAIM(Oxidation (M))SR_ ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1 13.614867670302875 0.2427269026982664 1 {[VA]|[{I|L}G]}TDARVT{M(Oxidation (M))|F} 9 -1 + 53.477 0 0 5.4653 5.4653 88.36 0 0 0 43.01911855043273 16.478174818886373 16.478174818886373 11.427418157023872 0 0.6643943297944485 0 0 0 {[VA]|[{I|L}G]}TDARVT{M(Oxidation (M))|F};{[VA]|[{I|L}G]}TDRAVT{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[YC]|[HE]}RC[HK] 5.4653;4.2974;0.98257 -;-;- 174 + NaN NaN 99845.4 NaN 3042 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4965 32.25 NaN 74164 35 0 7013.2 0.261 -1 PGWVCVMC 8 34 476.1984329560208 NaN 0 476.19854736328125 PEAK HCD FTMS 0 0 0 4960 18165.2734375 0.7753631041801791 40 -0.8798866271972656 5 Carbamidomethyl (C) _PGWVCVMC(Carbamidomethyl (C))_ ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 2.8892196856762586 0.38822285293237185 1 A 1 -1 6.9897 0 0 0.73546 0 0 146.99017538294157 729.3369845025999 876.3271598855415 0 0 0 0 0 0 0 0 0 A 0.73546 - 4 + NaN NaN 120903.1 NaN 3043 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4966 32.253 NaN 36104 35 0 4965.1 0.261 + 19056 NEEQPHELSP 10 32 590.2675834773363 1178.5206140214725 2 590.2677612304688 MULTI HCD FTMS 0 0 0 4960 13219.013671875 0.2259445917995767 10 -0.24663925170898438 6 Unmodified _NEEQPHELSP_ REV__ENSG00000137275|ENST00000259808|RIPK1;REV__nc|ENSG00000137275|Q13546-2|RIPK1 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82727.9 NaN 3044 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4967 32.257 NaN 19082 35 0 2990.6 0.261 + 20841 PHWAEEFFVS 10 14 624.7877388852504 1247.5609248373007 2 624.786865234375 MULTI HCD FTMS 0 0 0 4960 9214.2099609375 0.2687556861004787 20 -0.4163818359375 7 Unmodified _PHWAEEFFVS_ ENST00000555746.5_3_14:35452094-35465902:+|nuORF 3.944395688203298 0.4544253912184634 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 96863.6 NaN 3045 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4968 32.26 NaN 83076 35 0 9988.5 0.264 -1 TSEMLHSPLPC 11 49 410.8546319306932 1229.5420663922796 3 410.85467529296875 MULTI HCD FTMS 0 0 0 4960 18026.990234375 0.582851429520103 -1 0.03665924072265625 8 Oxidation (M) _TSEM(Oxidation (M))LHSPLPC_ ENST00000580711.1_1_17:26715134-26722930:+|nuORF 5.047519993296601 0.3967839584832933 1 {I|L}{[CP]|[EA]} 3 -1 8.072 0 0 0.6565 0 0 898.3870503784109 0 898.3870503784109 0 -3.610469015915781 -3.610469015915781 0 0 0 0 0 0 {I|L}{[CP]|[EA]} 0.6565 + + 32 + NaN NaN 95855.2 NaN 3046 1920 4960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4970 32.265 NaN 2303500 35 0 712460 0.327 + 18801 NADPQAVTM 9 74 481.71612515155437 961.4176973699088 2 481.7162780761719 MULTI HCD FTMS 0 0 0 4969 1438764.75 1 0 0 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 176.4269993864032 3.292532597148328E-10 1 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 114.53 0 0 11.912 11.912 94.34 0 0 0 7.745886014129141 7.745886014129141 7.745886014129141 9.208187539523749 0 3.1989700043360187 1.154901959985743 0.8754223615525999 1.8411290632962718 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]NAVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]GGAVT{M(Oxidation (M))|F};[QP]ADNAVT{M(Oxidation (M))|F};[QP][DG]QAVT{M(Oxidation (M))|F};[QP]ADGGAVT{M(Oxidation (M))|F};[QP][DG][AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}[YT]{M(Oxidation (M))|F}[PS]Y;{[SA]|[TG]}[YQ]{M(Oxidation (M))|F}[PS]Y 11.912;10.954;9.0101;8.0523;7.233;7.0214;6.2752;6.0637;2.9314;0.39605 +;-;-;-;-;-;-;-;-;- + 669 NaN NaN 441543.1 NaN 3047 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4971 32.27 NaN 909360 35 0 230290 0.261 + 12976 KYIHSANVL 9 79 522.7952755061955 1043.5759980791909 2 522.7952880859375 MULTI HCD FTMS 0 0 0 4969 484964.5 0.524630003974228 3 -0.0866241455078125 2 Unmodified _KYIHSANVL_ ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;ENSG00000141639|ENST00000400384|MAPK4;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 93.93812099017352 0.0044227730261779084 1 [YK]{I|L}HSANV{I|L} 9 0 + 84.549 0 0 8.1019 8.1019 91.587 0 0 0 4.137342758552691 67.36880000633434 4.137342758552691 9.208187539523749 0 2.086696871556164 0 1.0044321917401078 0.805462187404089 + + [YK]{I|L}HSANV{I|L};[YK]{I|L}HSAGGV{I|L};[H{I|L}][YK]SANV{I|L};KY{I|L}HSANV{I|L};[H{I|L}][YK]SAGGV{I|L};[{M(Oxidation (M))|F}V]P{[RE]|[WV]}ANV{I|L};[KG]{[SA]|[TG]}{[RE]|[WV]}ANV{I|L};KY{I|L}HSAGGV{I|L};[YK]{I|L}HS[NG]{I|L}{I|L};{I|L}[YK]HSANV{I|L} 8.1019;7.2195;5.6171;5.359;4.7347;4.6754;4.3337;4.2261;4.2089;4.1087 +;-;-;+;-;-;-;-;-;- + 679 NaN NaN 213719.2 NaN 3048 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4972 32.273 NaN 403050 35 0 34717 0.261 + 9865 IADEEQKAL 9 83 508.76657985991756 1015.5186067866351 2 508.7663879394531 MULTI HCD FTMS 0 0 0 4969 184358.578125 1 0 0 3 Unmodified _IADEEQKAL_ ENSG00000166326|ENST00000299413|TRIM44;ENST00000532066.1_1_11:35745832-35827932:+|nuORF 61.08992128646608 0.016056751534446034 1 {I|L}ADEEQKA{I|L} 9 0 + 82.731 0 0 8.1466 8.1466 89.252 0 0 0 71.81295286445945 9.009461452434238 9.009461452434238 5.365071892553814 0 2.916386562212267 1.5228787452803376 0.8494850021680094 0 + + {I|L}ADEEQKA{I|L};[{I|L}A]DEEQKA{I|L};{I|L}ADEE[AG]KA{I|L};[{I|L}A]DEEQAK{I|L};[{I|L}A]DEE[AG]KA{I|L};[{I|L}A]DEE[AG]AK{I|L};[{I|L}A]DE[DV]NK{I|L};[{I|L}A]DE[DV]GGK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}A]EQKA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}A]EQAK{I|L} 8.1466;7.6183;7.2399;6.7736;6.7116;5.8668;4.4851;3.5783;3.0735;2.2287 +;+;-;-;-;-;-;-;-;- + 305 + NaN NaN 142809.5 NaN 3049 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4973 32.277 NaN 178440 35 0 38754 0.261 + 4276 EVISPDTTER 10 40 573.7858809131047 1145.5572088930094 2 573.7855834960938 MULTI HCD FTMS 0 0 0 4969 101994.3828125 0.9611782178954059 1 -0.0333251953125 4 Unmodified _EVISPDTTER_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 34.93206674587334 0.18938571726943593 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4 6 53.174 0 0 4.6418 0 0 0 714.3068786530281 714.3068786530281 40.96787486224656 0 0 0 0 1.5 1.6989700043360187 1.3252574989159953 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4.6418 + + 26 NaN NaN 128339.9 NaN 3050 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4974 32.28 NaN 97838 35 0 9346.9 0.262 + 21968 QEPARAPAL 9 45 476.76455743109454 951.5145619289891 2 476.7645568847656 MULTI HCD FTMS 0 0 0 4969 27359.31640625 1 0 0 5 Unmodified _QEPARAPAL_ REV__ENSG00000167680|ENST00000586582|SEMA6B 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.311 0 0 786.468585221761 0 786.468585221761 0 5.0269751594335315 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.311 - 15 + NaN NaN 93214 NaN 3051 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4975 32.283 NaN 62521 35 0 5408.4 0.261 -1 NLHHMQYF 8 35 553.2498467149409 1104.4851404966817 2 553.2671508789062 MULTI HCD FTMS 0 0 0 4969 9576.6943359375 0.9833659182122048 -3 0.09332275390625 6 Oxidation (M) _NLHHM(Oxidation (M))QYF_ ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2 2.302733041254933 0.5385759549224092 1 C(Carbamidomethyl (C)) 1 -1 3.0989 0 0 0.28058 0 0 552.7785497757817 388.64255701236567 941.4211067881474 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.28058 - 3 + NaN NaN 87230.3 NaN 3052 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4976 32.287 NaN 31619 35 0 4458.6 0.261 + 25386 SEIEAKVRY 9 27 547.7956220010075 NaN 0 547.7960205078125 PEAK HCD FTMS 0 0 0 4969 13562.6513671875 0.31258699130456075 5 -0.1332244873046875 7 Unmodified _SEIEAKVRY_ ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 3.5964929083625545 0.27781873954207675 1 EA 2 7 6.4537 0 0 0.59014 0 0 329.1599563049461 561.3197115533811 890.4796678583273 0 0 0 0 0 0 0 0 0 + EA 0.59014 + + 3 + NaN NaN 87885.7 NaN 3053 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4977 32.29 NaN 45127 35 0 7034.3 0.262 + 22138 QITENGEFRNT 11 26 436.8790948210623 NaN 0 436.87921142578125 PEAK HCD FTMS 0 0 0 4969 17065.328125 0.626969125309181 65 -1.5561370849609375 8 Unmodified _QITENGEFRNT_ ENSG00000197283|ENST00000646630|SYNGAP1;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 0.40826533853263924 0.34096201227758716 1 {M(Oxidation (M))|F} 1 10 3.9794 0 0 0.45649 0 0 547.8376136149778 173.81963525943596 721.6572488744138 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.45649 + + 1 + NaN NaN 110006.1 NaN 3054 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4978 32.293 NaN 81613 35 0 9884.8 0.261 -1 VRRMEQLRM 9 52 426.22599861052225 NaN 0 426.2386169433594 PEAK HCD FTMS 0 0 0 4969 1567.0936279296875 1 0 0 9 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VRRMEQLRM(Oxidation (M))_ ENST00000474018.1_1_6:170089229-170089316:-|nuORF 1.0714618166137932 0.2900546878344058 1 H 1 -1 2.2185 0 0 0.26086 0 0 303.677752981007 406.67231165103755 710.3500646320446 0 0 0 0 0 0 0 0 0 H 0.26086 - 1 + NaN NaN 92303.9 NaN 3055 1921 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4980 32.299 NaN 203500 35 0 31074 0.327 + 22027 QGCWACLGF 9 45 492.7071996911429 983.3998464490858 2 492.70697021484375 MULTI HCD FTMS 0 0 0 4979 135858.890625 0.9734514928903082 1 -0.02002716064453125 1 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 1 {[QG]|[NA]}DSS[SG]VT 9 7 52.788 0 0 5.3679 0 0 0 162.02469931457327 162.02469931457327 38.18426893869692 0 0 0 0 1.774227503252014 1.5228787452803376 0 0.75 {[QG]|[NA]}DSS[SG]VT 5.3679 - 125 NaN NaN 110552.6 NaN 3056 1922 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4981 32.303 NaN 167540 35 0 36323 0.261 + 10499 IPEGNEKAL 9 43 485.76367357577004 969.5127942183401 2 485.7633361816406 MULTI HCD FTMS 0 0 0 4979 113795.015625 0.9371937389854129 1 -0.02002716064453125 2 Unmodified _IPEGNEKAL_ ENSG00000143387|ENST00000271651|CTSK 40.23920728925047 0.06424668180817725 1 {I|L}PE 3 6 45.788 0 0 4.7228 0 0 0 627.3097017877561 627.3097017877561 28.665827977365623 0 0 0 0 0.3252574989159953 1.5228787452803376 0.3494850021680094 0 + {I|L}PE 4.7228 + + 119 + NaN NaN 102739.6 NaN 3057 1922 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4982 32.307 NaN 36372 35 0 6220.6 0.261 -1 LPTENVDKM 9 27 531.7604395501136 1061.506326167027 2 531.7601928710938 MULTI HCD FTMS 0 0 0 4979 10102.5576171875 0.27174399802800114 9 -0.19672393798828125 3 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 3.2813086475875832 0.32614229037259 1 N[HQ]{M(Oxidation (M))|F} 4 -1 14.693 0 0 1.3841 0 0 517.3022328107437 0 517.3022328107437 0 14.69273760456403 0 0 0 0 0 0 0 N[HQ]{M(Oxidation (M))|F} 1.3841 - 3 NaN NaN 79243.2 NaN 3058 1922 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4983 32.31 NaN 31537 35 0 5462.8 0.261 -1 VHAIMMLISL 10 22 580.3145664732599 1158.6145800133197 2 580.3139038085938 MULTI HCD FTMS 0 0 0 4979 11422.71484375 0.7958684834213514 -4 0.12664794921875 4 2 Oxidation (M) _VHAIM(Oxidation (M))M(Oxidation (M))LISL_ ENST00000375592.7_1_1:16621313-16632330:-|nuORF 3.5964929083625545 0.45626689593999237 1 A{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 15.458 0 0 1.3341 0 0 851.4452381818375 0 851.4452381818375 0 11.962724883926656 0 0 0 0.5 0 0 0 A{[MS]|[{M(Oxidation (M))|F}A]} 1.3341 - 3 NaN NaN 85386.3 NaN 3059 1922 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4984 32.313 NaN 14745 35 0 4364 0.261 -1 MTERRHERM 9 15 639.2954692025438 1276.5763854718875 2 639.7965087890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _M(Oxidation (M))TERRHERM(Oxidation (M))_ ENST00000406697.5_1_12:7178038-7178068:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92732.4 NaN 3060 1922 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4986 32.319 NaN 98482 35 0 22197 0.327 + 16061 LPSNDSSKF 9 40 497.7454556927701 993.4763584523403 2 497.7454528808594 MULTI HCD FTMS 0 0 0 4985 55791.9140625 0.6813331044847859 3 -0.07987213134765625 1 Unmodified _LPSNDSSKF_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 24.990960013464015 0.14443998892849796 1 {I|L}PC[PG]{[QV]|[N{I|L}]|[RA]|[KV]}S 8 6 30.992 0 0 3.1195 0 0 0 209.05811487369377 209.05811487369377 5.8142436645285756 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}PC[PG]{[QV]|[N{I|L}]|[RA]|[KV]}S 3.1195 - 38 + NaN NaN 104608.9 NaN 3061 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4987 32.323 NaN 82964 35 0 10034 0.261 + 9232 HPLSDHEATL 10 31 560.2751367728551 1118.5357206125102 2 560.2755126953125 MULTI HCD FTMS 0 0 0 4985 30287.765625 0.005167021602183172 201 -5.089317321777344 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 41.8396318013385 0.12944265636084 1 EAT{I|L} 4 6 41.402 0 0 3.7015 0 0 686.3162708966812 0 686.3162708966812 0 19.97547537623447 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.7015 + + 17 NaN NaN 96180.3 NaN 3062 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4988 32.327 NaN 136460 35 0 27532 0.262 -1 AGADHIITM 9 33 472.72814749338465 943.4417420535693 2 472.7287292480469 MULTI HCD FTMS 0 0 0 4985 72443.921875 0.7550369741530241 -2 0.05335235595703125 3 Oxidation (M) _AGADHIITM(Oxidation (M))_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENST00000430496.1_1_9:127913263-127913512:+|nuORF;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 26.88365393820708 0.12808753336095696 1 {I|L}T{M(Oxidation (M))|F} 3 -1 44.693 0 0 4.7372 0 0 564.265428611525 0 564.265428611525 0 37.70303756120384 0 0 0 1.4247425010840047 0 0.4247425010840047 0 {I|L}T{M(Oxidation (M))|F} 4.7372 + + 37 NaN NaN 101534.2 NaN 3063 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4989 32.33 NaN 33218 35 0 4817.2 0.261 + -1 PVCICVGMI 9 19 545.7579844750951 1089.50141601699 2 545.7576904296875 MULTI HCD FTMS 0 0 0 4985 26485.033203125 0.12342428603373498 8 -0.17669677734375 4 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))PVC(Carbamidomethyl (C))IC(Carbamidomethyl (C))VGMI_ REV__ENSG00000009694|ENST00000371130|TENM1;REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1;REV__TENM1|p.T606I|1|0.72|ENSG00000009694|chrX:124645202-124645202|G/A|missense_variant 2.302733041254933 0.33356062215410776 1 M{I|L} 2 -1 20.969 0 0 1.9247 0 0 827.3641834943375 0 827.3641834943375 0 20.969100130080562 0 0 0 0 0 0 0 M{I|L} 1.9247 + + 1 NaN NaN 93500.4 NaN 3064 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4990 32.333 NaN 39880 35 0 4958.6 0.261 + 8596 HAYDGKDYI 9 21 541.2510362616275 1080.487519590055 2 541.7529296875 MULTI HCD FTMS 0 0 0 4985 17748.328125 0.8481777488055976 -1 0.02002716064453125 5 Unmodified _HAYDGKDYI_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H 13.042465956692817 0.2476723265019929 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 97368.2 NaN 3065 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4991 32.337 NaN 39013 35 0 7861.4 0.261 -1 SAAAVDAGMAM 11 16 513.7151402458435 1025.4157275584869 2 513.71484375 MULTI HCD FTMS 0 0 0 4985 10943.818359375 0.13451139052201866 51 -1.1595344543457031 6 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 5.731851221503515 0.39378271418728467 1 W 1 -1 9.6041 0 0 0.9366 0 0 399.21156342005094 437.11628137760005 836.327844797651 0 0 0 0 0 0.5 0 0 0 W 0.9366 - 1 + NaN NaN 104243.7 NaN 3066 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4992 32.34 NaN 37551 35 0 6892.5 0.261 + 30196 VHRRYWRS 8 23 580.3145664732599 1158.6145800133197 2 580.3148193359375 MULTI HCD FTMS 0 0 0 4985 6329.6640625 0.4410142603485234 -3 0.083343505859375 7 Unmodified _VHRRYWRS_ ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99111.2 NaN 3067 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4993 32.343 NaN 25619 35 0 3445.3 0.261 -1 HPTDVDYRVM 10 22 624.7877388852504 1247.5609248373007 2 624.7870483398438 MULTI HCD FTMS 0 0 0 4985 6532.8798828125 0.1905479278810193 23 -0.4529457092285156 8 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 82673.3 NaN 3068 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4994 32.347 NaN 22430 35 0 4089.5 0.261 -1 MLICSLCKH 9 21 589.2796750612275 1176.544797189255 2 589.2802124023438 MULTI HCD FTMS 0 0 0 4985 15660.1025390625 1 0 0 9 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LIC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))KH_ ENSG00000212126|ENST00000506868|TAS2R50 1.6526216038709556 0.33848895094777925 1 H 1 -1 4.6041 0 0 0.39132 0 0 871.2933456285112 165.1720369928344 1036.4653826213457 0 0 0 0 0 0 0 0 0 H 0.39132 + + 1 + NaN NaN 95220.3 NaN 3069 1923 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4996 32.352 NaN 53044 35 0 9495.8 0.327 -1 HVTQEDFEM 9 23 576.2374894889024 1150.4604260446047 2 576.2371826171875 MULTI HCD FTMS 0 0 0 4995 30275.814453125 0.08575098757467274 17 -0.31641387939453125 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 28.494509381512117 0.11816142465008336 1 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 -1 50.701 0 0 4.407 0 0 465.233690330275 0 465.233690330275 0 50.70107520596089 0 0 0 1.4247425010840047 0 0 0 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.407 + + 19 NaN NaN 99460.3 NaN 3070 1924 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4997 32.356 NaN 227770 35 0 16541 0.261 -1 0 62 528.9266409364087 1583.758093409426 3 528.92626953125 MULTI HCD FTMS 0 0 0 4995 76623.828125 0.3449525647798326 -4 0.11661529541015625 2 NaN NaN 1 SYTD 4 -1 33.972 0 0 2.145 0 0 786.4034293642088 328.1619967096313 1114.5654260738402 0 0 0 0 0 0.9247425010840047 0 0.7302046884880937 0 SYTD 2.145 - 165 + NaN NaN 114446 NaN 3071 1924 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4998 32.36 NaN 47567 35 0 9006.4 0.261 -1 0 26 578.267479439131 1154.5204059450618 2 578.26708984375 MULTI HCD FTMS 0 0 0 4995 24885.591796875 0.1958694155011637 10 -0.20954513549804688 3 NaN NaN 1 TT 2 -1 10.969 0 0 0.9501 0 0 235.15396414994308 714.2523287408811 949.4062928908243 0 0 0 0 0 0 0 0 0 TT 0.9501 - 4 + NaN NaN 87291 NaN 3072 1924 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 4999 32.363 NaN 75217 35 0 7564.2 0.261 + 17726 MCPWCPYT 8 29 500.6892957786751 999.3640386241502 2 500.6893310546875 MULTI HCD FTMS 0 0 0 4995 17392.98828125 0.7251569371982486 5 -0.1100311279296875 4 Unmodified _MCPWCPYT_ REV__ENST00000587110.1_1_17:41796950-41797316:-|nuORF 2.577480529830294 0.5381683276125971 1 ME 2 -1 23.711 0 0 2.3726 0 0 0 736.2744234674436 736.2744234674436 20.612431371158735 0 0 0 0 0 0 0.4247425010840047 0 ME 2.3726 - 4 + NaN NaN 98033.5 NaN 3073 1924 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5000 32.367 NaN 27503 35 0 3466.2 0.261 + -1 SCTPPSAQSS 10 19 511.21674828420856 1020.4189436352171 2 511.21636962890625 MULTI HCD FTMS 0 0 0 4995 9739.953125 0.8076713338687732 1 -0.02330780029296875 5 Carbamidomethyl (C) _SC(Carbamidomethyl (C))TPPSAQSS_ REV__AVPR1B|p.L140Cfs*38|1|0.11|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90021.7 NaN 3074 1924 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5001 32.37 NaN 80049 35 0 18376 0.262 -1 HPTDVDYRVM 10 38 416.86057511967465 1247.559895959224 3 416.860595703125 MULTI HCD FTMS 0 0 0 4995 10604.03515625 0.24408740823343053 21 -0.3929901123046875 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 5.047519993296601 0.4485863789024576 1 D 1 -1 10.485 0 0 0.8404 0 0 549.2529024062927 580.2540377252561 1129.5069401315488 0 0 0 0 0 0.5 0 0 0 D 0.8404 + + 7 + NaN NaN 106781.8 NaN 3075 1924 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5003 32.375 NaN 81713 35 0 17592 0.327 + 12921 KYGPIRQI 8 30 487.7927041592159 973.5708553852318 2 487.7922668457031 MULTI HCD FTMS 0 0 0 5002 33262.11328125 0.1847029547523691 8 -0.16293716430664062 1 Unmodified _KYGPIRQI_ ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF 4.75600775471527 0.5349361699807423 1 KYG 3 5 26.198 0 0 2.6909 0 0 0 622.3704928033811 622.3704928033811 26.197887582883936 0 0 0 0 0 0 0 0 + KYG 2.6909 + + 4 + NaN NaN 88602.8 NaN 3076 1925 5002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5004 32.38 NaN 108710 35 0 13742 0.261 + 18990 NASQLITQR 9 48 515.7857644565901 1029.55697597998 2 515.7855224609375 MULTI HCD FTMS 0 0 0 5002 56947.12890625 0.41364843648829186 -7 0.20325469970703125 2 Unmodified _NASQLITQR_ ENSG00000215021|ENST00000535923|PHB2;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2 33.4449034751529 0.0954363425218424 1 {[QG]|[NA]}SQ{I|L}{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 53.446 0 0 5.1912 5.1912 86.583 0 0 0 47.961434083857526 7.147642715192504 7.147642715192504 9.208187539523749 0 1.3807196863200843 1.3010299956639813 0.3494850021680094 0 + + {[QG]|[NA]}SQ{I|L}{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]};{[QG]|[NA]}S[AG]{I|L}{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 5.1912;4.2968 +;- + 24 + NaN NaN 105429.7 NaN 3077 1925 5002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5005 32.383 NaN 26136 35 0 5865 0.261 + 357 AHDNVDRVTI 10 22 570.2938518458501 1138.5731507585 2 570.2937622070312 MULTI HCD FTMS 0 0 0 5002 16226.70703125 0.016604578461074833 77 -1.8726425170898438 3 Unmodified _AHDNVDRVTI_ REV__ENSG00000166341|ENST00000299441|DCHS1 7.101721422024254 0.4377131641736035 1 [HA]D 3 -1 13.952 0 0 1.2254 0 0 0 812.4189547174436 812.4189547174436 2.715299873086609 0 0 0 0 0.5 0 0 0 [HA]D 1.2254 + + 3 + NaN NaN 85122.9 NaN 3078 1925 5002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5006 32.387 NaN 20040 35 0 3706.3 0.261 -1 MSSMEHTEEG 10 20 585.2082637804797 1168.4019746277593 2 585.2083129882812 MULTI HCD FTMS 0 0 0 5002 13112.8505859375 0.6866599096185149 4 -0.08672332763671875 4 2 Oxidation (M) _M(Oxidation (M))SSM(Oxidation (M))EHTEEG_ ENSG00000141376|ENST00000407086|BCAS3;ENST00000585812.5_1_17:59431721-59456358:+|nuORF;ENST00000587294.5_1_17:59445549-59469483:+|nuORF;ENST00000592702.5_1_17:59431721-59469483:+|nuORF;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87357.1 NaN 3079 1925 5002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5007 32.39 NaN 36855 35 0 4077.5 0.261 + 9276 HPNDDDVHF 9 33 548.228302940141 1094.442052947082 2 548.2282104492188 MULTI HCD FTMS 0 0 0 5002 8338.314453125 0.028701248274785672 72 -1.7329635620117188 5 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 4.3292370932331545 0.3181982124262546 1 V{[{M(Oxidation (M))|F}H]|[RQ]} 3 6 10.686 0 0 0.97642 0 0 693.2363472359476 0 693.2363472359476 0 0.22878745280337398 0 0 0 0.5 0 0 0 + V{[{M(Oxidation (M))|F}H]|[RQ]} 0.97642 + + 8 + NaN NaN 82542.4 NaN 3080 1925 5002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5008 32.393 NaN 10837 35 0 2920.8 0.261 -1 IPCEGGLRCLC 11 11 639.2954692025438 1276.5763854718875 2 639.297119140625 MULTI HCD FTMS 0 0 0 5002 5765.3193359375 0.7074628586274301 1 -0.02329254150390625 6 2 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))EGGLRC(Carbamidomethyl (C))LC_ ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83450 NaN 3081 1925 5002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5010 32.399 NaN 1791200 35 0 559000 0.327 + 18802 NADPQAVTM 9 66 481.71612515155437 961.4176973699088 2 481.7161560058594 MULTI HCD FTMS 0 0 0 5009 1021431.125 0.7099361622530717 5 -0.09682464599609375 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 125.0377797344192 0.0009059125702818869 1 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 99.398 0 0 10.339 10.339 94.024 0 0 0 8.384840248857842 8.384840248857842 8.384840248857842 9.208187539523749 0 2.805462187404089 1.154901959985743 0.5774509799928715 1.086696871556164 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};[QP][DG]QAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP{[SA]|[TG]}{I|L}Q{M(Oxidation (M))|F};[QP][DG][AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}DP{[SA]|[TG]}{I|L}[AG]{M(Oxidation (M))|F};{[QG]|[NA]}DVV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[PS];[QP]{[ES]|[DT]|[{I|L}C]}N{I|L}Q{M(Oxidation (M))|F};[QP]{[ES]|[DT]|[{I|L}C]}N{I|L}[AG]{M(Oxidation (M))|F};[QP]{[ES]|[DT]|[{I|L}C]}GG{I|L}Q{M(Oxidation (M))|F} 10.339;9.3809;5.7134;5.4095;4.7556;4.4517;2.3256;2.1303;1.1669;1.1669 +;-;-;-;-;-;-;-;-;- + 377 NaN NaN 348271.4 NaN 3082 1926 5009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5011 32.403 NaN 75217 35 0 7785.1 0.261 + 12020 KHPAQIYG 8 34 457.24811453014297 912.481676127086 2 457.2480773925781 MULTI HCD FTMS 0 0 0 5009 44926.625 0.21105884256263968 9 -0.1730194091796875 2 Unmodified _KHPAQIYG_ REV__ENSG00000159339|ENST00000375448|PADI4;REV__ENST00000468945.1_1_1:17672544-17674609:+|nuORF 2.302733041254933 0.5385759549224092 1 V 1 -1 6.9897 0 0 0.76601 0 0 272.1101073788422 538.2782076471311 810.3883150259733 0 0 0 0 0 0 0 0 0 V 0.76601 - 1 + NaN NaN 85323.1 NaN 3083 1926 5009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5012 32.407 NaN 20901 35 0 3985.8 0.261 -1 HPTDVDYRVM 10 16 624.7877388852504 1247.5609248373007 2 624.7887573242188 MULTI HCD FTMS 0 0 0 5009 5412.4765625 0.15786853764177153 26 -0.5197830200195312 3 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85112 NaN 3084 1926 5009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5013 32.41 NaN 12841 35 0 4894.8 0.261 + -1 YDAMDTVRKY 10 11 639.2954692025438 1276.5763854718875 2 639.2949829101562 MULTI HCD FTMS 0 0 0 5009 5437.21044921875 0.6672005873786919 2 -0.040042877197265625 4 Oxidation (M) _YDAM(Oxidation (M))DTVRKY_ REV__ENSG00000129646|ENST00000680821|QRICH2;REV__ENST00000524722.1_2_17:74270319-74300575:-|nuORF;REV__nc|ENSG00000129646|Q9H0J4-3|QRICH2;REV__nc|ENSG00000129646|Q9H0J4|QRICH2 0.4007161486938917 0.47318265037741464 1 N 1 -1 4.6041 0 0 0.36066 0 0 870.1868113525501 289.33323084049067 1159.5200421930408 0 0 0 0 0 0 0 0 0 N 0.36066 - 1 + NaN NaN 84147.5 NaN 3085 1926 5009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5015 32.415 NaN 344590 35 0 81600 0.327 + 12977 KYIHSANVL 9 51 522.7952755061955 1043.5759980791909 2 522.7953491210938 MULTI HCD FTMS 0 0 0 5014 158953.171875 0.17195403620779953 9 -0.1794281005859375 1 Unmodified _KYIHSANVL_ ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;ENSG00000141639|ENST00000400384|MAPK4;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 69.33821966488729 0.009302356455414924 1 HSANV{I|L} 6 3 63.849 0 0 6.1183 0 0 404.2407398908219 0 404.2407398908219 0 48.44335023848103 0 0 0 1.6549471895720984 0 0.3494850021680094 0.805462187404089 + HSANV{I|L} 6.1183 + + 165 NaN NaN 128593.6 NaN 3086 1927 5014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5016 32.42 NaN 211640 35 0 33555 0.261 -1 0 60 508.17176229240647 1014.328971651613 2 508.1715087890625 MULTI HCD FTMS 0 0 0 5014 65869.9140625 0.5697574633888036 5 -0.10292434692382812 2 NaN NaN 1 T{M(Oxidation (M))|F} 2 -1 21.766 0 0 2.1459 0 0 748.2368218486818 0 748.2368218486818 0 17.584784656551378 0 0 0 0.3807196863200844 0 0 0 T{M(Oxidation (M))|F} 2.1459 - 56 + NaN NaN 119587.2 NaN 3087 1927 5014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5017 32.423 NaN 60084 35 0 7297.8 0.261 + 18630 MYDDIAHS 8 32 476.1984329560208 NaN 0 476.1985778808594 PEAK HCD FTMS 0 0 0 5014 13860.947265625 0.591638057953278 47 -1.0629501342773438 3 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 V 1 8 6.9897 0 0 0.73546 0 0 199.99548544153532 648.3013399713499 848.2968254128853 0 0 0 0 0 0 0 0 0 V 0.73546 - 3 + NaN NaN 96628.8 NaN 3088 1927 5014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5018 32.427 NaN 30153 35 0 5753.6 0.261 + 2198 DIISSQQEIN 10 19 573.7858809131047 1145.5572088930094 2 573.7864990234375 MULTI HCD FTMS 0 0 0 5014 14725.283203125 0.13876863682977483 7 -0.14623260498046875 4 Unmodified _DIISSQQEIN_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 4.897010918128616 0.4493830473644964 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4 6 33.188 0 0 2.8971 0 0 0 714.3050587860188 714.3050587860188 33.187587626244124 0 0 0 0 0 1.6989700043360187 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 2.8971 + + 4 + NaN NaN 80278.1 NaN 3089 1927 5014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5019 32.43 NaN 19416 35 0 4084.4 0.261 + -1 YRMAQSILL 9 14 555.8023772444718 1109.5902015557435 2 555.802001953125 MULTI HCD FTMS 0 0 0 5014 2584.1611328125 0.11668130448007043 6 -0.12293243408203125 5 Oxidation (M) _YRM(Oxidation (M))AQSILL_ REV__ENSG00000095319|ENST00000372577|NUP188;REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91860.9 NaN 3090 1927 5014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5020 32.433 NaN 33980 35 0 9814.8 0.261 + 3222 EDKLLRIKI 9 20 564.3592767911059 NaN 0 564.2816162109375 PEAK HCD FTMS 0 0 0 5014 4457.33349609375 0.9395661553095938 -1 0.016712188720703125 6 Unmodified _EDKLLRIKI_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89072.4 NaN 3091 1927 5014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5022 32.439 NaN 155600 35 0 22717 0.327 -1 0 45 492.7071996911429 983.3998464490858 2 492.7070617675781 MULTI HCD FTMS 0 0 0 5021 89528.796875 0.6414886841318332 7 -0.13297653198242188 1 NaN NaN 1 {[QG]|[NA]}D 3 -1 40.176 0 0 4.0854 0 0 0 680.2704268536357 680.2704268536357 12.657490375968763 0 0 0 0 1 1.5228787452803376 0 0.75 {[QG]|[NA]}D 4.0854 - 27 NaN NaN 108222.5 NaN 3092 1928 5021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5023 32.443 NaN 63767 35 0 11607 0.261 + 16393 LSHETVTIA 9 36 485.76367357577004 969.5127942183401 2 485.76336669921875 MULTI HCD FTMS 0 0 0 5021 41802.26953125 0.34427540665903567 7 -0.13297653198242188 2 Unmodified _LSHETVTIA_ ENST00000402743.2_1_1:44587827-44588175:-|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}P 2 8 20.969 0 0 2.1628 0 0 0 756.3519991510374 756.3519991510374 9.274400170273578 0 0 0 0 0 0 0 0 {I|L}P 2.1628 - 14 + NaN NaN 88170.2 NaN 3093 1928 5021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5024 32.447 NaN 152940 35 0 32019 0.261 + 3324 EEKPNNPEF 9 33 552.2538921130648 1102.4932312929295 2 552.25390625 MULTI HCD FTMS 0 0 0 5021 53020.5078125 0.4255641953003002 -3 0.06333541870117188 3 Unmodified _EEKPNNPEF_ ENSG00000119917|ENST00000371818|IFIT3 27.628801355627647 0.12213550946336599 1 {M(Oxidation (M))|F} 1 8 21.237 0 0 1.9263 0 0 937.4146160358968 0 937.4146160358968 0 12.28470012691339 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.9263 + + 16 + NaN NaN 106301.2 NaN 3094 1928 5021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5025 32.45 NaN 24341 35 0 5108.5 0.261 -1 EPMFWEIM 8 13 549.7349378910568 NaN 0 549.7347412109375 PEAK HCD FTMS 0 0 0 5021 14037.0517578125 1 0 0 4 Oxidation (M) _EPMFWEIM(Oxidation (M))_ ENSG00000167994|ENST00000394836|RAB3IL1;ENST00000533136.1_1_11:61665752-61666996:-|nuORF;nc|ENSG00000167994|Q8TBN0-2|RAB3IL1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79444.8 NaN 3095 1928 5021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5026 32.453 NaN 45395 35 0 3797.4 0.264 + -1 PNAMIIHRML 10 36 404.5501596870559 NaN 0 404.5502014160156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _PNAMIIHRM(Oxidation (M))L_ REV__UBQLN4|p.M218I|1|0.05|ENSG00000160803|chr1:156050378-156050378|C/T|missense_variant 1.9063754702782614 0.33855269584400594 1 M 1 -1 0.3786 0 0 0.04691 0 0 316.84652191141805 356.16953455142817 673.0160564628462 0 0 0 0 0 0 0 0 0 M 0.04691 + + 1 + NaN NaN 87073.2 NaN 3096 1928 5021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5027 32.457 NaN 32665 35 0 10104 0.261 + 3275 EEEDQYWL 8 22 556.2329561134263 NaN 0 556.227783203125 PEAK HCD FTMS 0 0 0 5021 4385.67724609375 1 0 0 6 Unmodified _EEEDQYWL_ ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90036.8 NaN 3097 1928 5021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5029 32.462 NaN 242350 35 0 29245 0.327 + 4109 ESTPITAVK 9 52 473.2663002593643 944.5180475855286 2 473.2662048339844 MULTI HCD FTMS 0 0 0 5028 89844.4140625 1 0 0 1 Unmodified _ESTPITAVK_ ENSG00000181789|ENST00000314797|COPG1 16.149105407346934 0.22083165093524068 1 {[ES]|[DT]|[{I|L}C]}T[{I|L}P]TAVK 9 0 + 31.08 0 0 3.2906 3.2906 81.381 0 0 0 -1.8832571547269303 6.30387817565364 -1.8832571547269303 4.704999916446798 0 0 0 0.4247425010840047 0 + + {[ES]|[DT]|[{I|L}C]}T[{I|L}P]TAVK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RH]TAVK 3.2906;2.7924 +;- + 83 + NaN NaN 111677.7 NaN 3098 1929 5028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5030 32.466 NaN 73348 35 0 7304.2 0.261 + 9233 HPLSDHEATL 10 28 560.2751367728551 1118.5357206125102 2 560.275146484375 MULTI HCD FTMS 0 0 0 5028 36259.91015625 0.006185855417341132 207 -5.284458160400391 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 19.256988751693697 0.33098864134661865 1 T{I|L} 2 8 21.198 0 0 1.8951 0 0 886.3935323645145 0 886.3935323645145 0 -0.2557626122369072 -0.2557626122369072 0 0 0 0 0.5 0 + T{I|L} 1.8951 + + 7 NaN NaN 99638.6 NaN 3099 1929 5028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5031 32.47 NaN 74623 35 0 8249.6 0.261 -1 KYLEERAMRQF 11 31 496.25381801751394 1485.739624652742 3 496.2533874511719 MULTI HCD FTMS 0 0 0 5028 13590.7626953125 0.26615820677648516 24 -0.48303985595703125 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 1 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5602100499475 1191.5602100499475 10.484550065040281 0 0 0 0 0 0 0 0 KY 1.4114 + + 5 + NaN NaN 105866.7 NaN 3100 1929 5028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5032 32.473 NaN 33266 35 0 5191.6 0.261 -1 SQRLVEAMTS 10 30 569.2815365377082 1136.5485201422164 2 570.2938232421875 MULTI HCD FTMS 0 0 0 5028 3896.4931640625 0.5870752799489378 -5 0.1100311279296875 4 Oxidation (M) _SQRLVEAM(Oxidation (M))TS_ ENST00000447404.6_1_9:125898664-125898736:-|nuORF 1.1933415558491238 0.46898715808974617 1 D{[MG]|[TS]} 3 -1 7.4473 0 0 0.65525 0 0 815.450487205275 0 815.450487205275 0 7.447274948966937 0 0 0 0 0 0 0 D{[MG]|[TS]} 0.65525 - 3 NaN NaN 95235.1 NaN 3101 1929 5028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5033 32.477 NaN 27228 35 0 6847.8 0.261 + -1 NDESVLLLC 9 16 531.7604395501136 1061.506326167027 2 531.760498046875 MULTI HCD FTMS 0 0 0 5028 15350.31640625 0.4129010206417885 16 -0.282958984375 5 Carbamidomethyl (C) _NDESVLLLC(Carbamidomethyl (C))_ REV__ENSG00000186642|ENST00000334456|PDE2A;REV__ENST00000539367.5_1_11:72287653-72353469:-|nuORF;REV__nc|ENSG00000186642|O00408-2|PDE2A;REV__nc|ENSG00000186642|O00408-3|PDE2A;REV__nc|ENSG00000186642|O00408-4|PDE2A;REV__nc|ENSG00000186642|O00408-6|PDE2A 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84832.8 NaN 3102 1929 5028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5035 32.482 NaN 37510 35 0 4626 0.327 + 26466 STSYFKDF 8 27 497.7284487652648 NaN 0 497.7453308105469 PEAK HCD FTMS 0 0 0 5034 2039.2425537109375 0.42731224988683775 3 -0.05622100830078125 1 Unmodified _STSYFKDF_ REV__tr|U7SRU5|U7SRU5_FUSNUPhosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01433PE=4SV=1 2.577480529830294 0.38822285293237185 1 PC 2 -1 7.9588 0 0 0.80113 0 0 113.05111206269267 677.3008516900999 790.3519637527926 0 0 0 0 0 0 0 0 0 PC 0.80113 - 5 + NaN NaN 83243.1 NaN 3103 1930 5034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5036 32.486 NaN 21375 35 0 5490.1 0.261 -1 KYMEDYHQF 9 17 638.7689735527658 1275.5233941723316 2 638.7683715820312 MULTI HCD FTMS 0 0 0 5034 14656.7099609375 0.5325326126958774 -5 0.10671615600585938 2 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 7.608950283845883 0.29333554423920943 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.3868275373062 0 982.3868275373062 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 3 NaN NaN 82511.5 NaN 3104 1930 5034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5037 32.49 NaN 32238 35 0 10113 0.262 -1 HAFMMWVK 8 21 541.2510362616275 1080.487519590055 2 541.2508544921875 MULTI HCD FTMS 0 0 0 5034 10161.8525390625 0.3890007646379723 5 -0.08959579467773438 3 2 Oxidation (M) _HAFM(Oxidation (M))M(Oxidation (M))WVK_ KLHL1|p.L379F|1|0.34|ENSG00000150361|chr13:69882373-69882373|C/A|missense_variant 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106049.3 NaN 3105 1930 5034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5039 32.495 NaN 517890 35 0 36021 0.327 -1 0 88 528.9266409364087 1583.758093409426 3 528.9265747070312 MULTI HCD FTMS 0 0 0 5038 181370.359375 0.8165106360828434 3 -0.06612014770507812 1 NaN NaN 1 DTYS{M(Oxidation (M))|F}GP[PG]ANK 12 -1 87.904 0 0 5.5503 0 0 331.18489272285314 0 331.18489272285314 0 66.46713777483761 0 0 0 2.492992819099939 0 2.341129063296272 0 DTYS{M(Oxidation (M))|F}GP[PG]ANK 5.5503 - 2743 NaN NaN 161854.9 NaN 3106 1931 5038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5040 32.5 NaN 21013 35 0 4581.2 0.261 + 32460 WECFMFMILH 10 18 452.87000499171444 NaN 0 452.8699951171875 PEAK HCD FTMS 0 0 0 5038 16538.91015625 0.7225560562069826 -14 0.3433418273925781 2 Unmodified _WECFMFMILH_ REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74414.8 NaN 3107 1931 5038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5041 32.503 NaN 27829 35 0 3056.7 0.261 + 8626 HEEPESFF 8 28 511.21674828420856 1020.4189436352171 2 511.2167053222656 MULTI HCD FTMS 0 0 0 5038 5390.578125 0.44700578828941545 8 -0.1400146484375 3 Unmodified _HEEPESFF_ ENSG00000119335|ENST00000322030|SET;ENSG00000230667|ENST00000596516|SETSIP;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF;ENST00000552169.1_1_12:107665281-107665620:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET;nc|ENSG00000230667|P0DME0-1|SETSIP 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90179.4 NaN 3108 1931 5038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5042 32.513 NaN 16278 35 0 3092.6 0.261 + 26280 SREGCSSLPEI 11 12 589.2796750612275 1176.544797189255 2 589.2796630859375 MULTI HCD FTMS 0 0 0 5038 11053.0341796875 0.7058085444917652 8 -0.1400146484375 4 Unmodified _SREGCSSLPEI_ nc|ENSG00000100503|Q8N4C6-6|NIN 2.282774691075616 0.408909192180357 1 E{I|L} 2 9 20.969 0 0 1.7823 0 0 916.4149037091812 0 916.4149037091812 0 20.969100130080562 0 0 0 0 0 0 0 + E{I|L} 1.7823 + + 1 NaN NaN 84160.4 NaN 3109 1931 5038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5044 32.518 NaN 214850 35 0 33100 0.327 + 18991 NASQLITQR 9 49 515.7857644565901 1029.55697597998 2 515.78564453125 MULTI HCD FTMS 0 0 0 5043 137670.359375 1 0 0 1 Unmodified _NASQLITQR_ ENSG00000215021|ENST00000535923|PHB2;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2 91.08480475639789 0.0044975408722150376 1 {[QG]|[NA]}SQ{I|L}{I|L}TQR 9 0 + 84.72 0 0 8.2288 8.2288 91.835 0 0 0 0.8804562952784067 0.8804562952784067 0.8804562952784067 9.208187539523749 0 2.579689690656103 1.5228787452803376 0.3494850021680094 1.035666875892183 + + {[QG]|[NA]}SQ{I|L}{I|L}TQR;{[QG]|[NA]}S[AG]{I|L}{I|L}TQR;{[QG]|[NA]}SQ{I|L}{I|L}T[AG]R;{[QG]|[NA]}S{I|L}{I|L}QTQR;{[QG]|[NA]}S{I|L}{I|L}QT[AG]R;{[QG]|[NA]}S{I|L}{I|L}[AG]TQR;{[QG]|[NA]}[{I|L}T]VQTQR;{[QS]|[NT]}GQ{I|L}{I|L}TQR;{[QG]|[NA]}[{I|L}T]VQT[AG]R;{[QG]|[NA]}[{I|L}T]V[AG]TQR 8.2288;7.3344;7.3344;6.8103;5.9159;5.9159;5.668;5.3576;4.7736;4.7736 +;-;-;-;-;-;-;-;-;- + 225 + NaN NaN 109126.8 NaN 3110 1932 5043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5045 32.523 NaN 80046 35 0 7203.4 0.261 + 213 AEVAAEKSF 9 41 476.24287832307743 950.4712037129549 2 476.2423400878906 MULTI HCD FTMS 0 0 0 5043 23067.193359375 0.7275119619582746 -3 0.05620574951171875 2 Unmodified _AEVAAEKSF_ ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22 28.233623360808718 0.11935903763491834 1 {[CP]|[EA]}VAAEKS{M(Oxidation (M))|F} 9 0 + 40.467 0 0 4.2576 4.2576 87.268 0 0 0 7.147642715192504 36.48789141519238 7.147642715192504 14.660677999045717 0 2.004432191740108 0 0 0 + + {[CP]|[EA]}VAAEKS{M(Oxidation (M))|F};{[CP]|[EA]}[Q{I|L}]EKS{M(Oxidation (M))|F} 4.2576;2.7151 +;- + 60 NaN NaN 91903.5 NaN 3111 1932 5043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5046 32.526 NaN 141120 35 0 9844.8 0.261 -1 KYMEDYHQF 9 59 426.18155050194446 1275.5228221060333 3 426.18194580078125 MULTI HCD FTMS 0 0 0 5043 44383.69140625 0.7683009835572511 -3 0.05620574951171875 3 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 22.774965066868997 0.16358569359229336 1 WDE{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 6 -1 30.111 0 0 2.3607 0 0 407.16498626794584 0 407.16498626794584 0 30.11107503885448 0 0 0 1.4247425010840047 0 0 0 WDE{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 2.3607 - 56 + NaN NaN 106997.8 NaN 3112 1932 5043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5047 32.529 NaN 19026 35 0 5586.8 0.261 -1 0 12 545.7579844750951 1089.50141601699 2 545.7583618164062 MULTI HCD FTMS 0 0 0 5043 4141.38427734375 0.019299481095692076 17 -0.326812744140625 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100610.9 NaN 3113 1932 5043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5048 32.533 NaN 73058 35 0 7851.1 0.261 + 34638 YPSEQEKAL 9 47 532.7666252143707 1063.5186974955413 2 532.767333984375 MULTI HCD FTMS 0 0 0 5043 33916.328125 0.27160013721115633 -6 0.11963653564453125 5 Unmodified _YPSEQEKAL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 27.223235318498237 0.1251536255799991 1 YPSE 4 5 49.157 0 0 4.6221 0 0 0 584.3050020807249 584.3050020807249 22.95880017344075 0 0 0 0 0.5 1.5228787452803376 0 0 + YPSE 4.6221 + + 15 + NaN NaN 112261.2 NaN 3114 1932 5043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5050 32.538 NaN 1221600 35 0 380500 0.327 + 18803 NADPQAVTM 9 55 481.71612515155437 961.4176973699088 2 481.716064453125 MULTI HCD FTMS 0 0 0 5049 647700.5 0.45017818236094537 12 -0.20674514770507812 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 110.5527297667825 0.0028521687250969148 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 90.372 0 0 9.3999 9.3999 98.912 0 0 0 0.4845500650402812 0.4845500650402812 0.4845500650402812 90.37192209717617 0 2.8494850021680094 1.0969100130080565 1.5044321917401078 0 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9.3999 + + 170 + NaN NaN 271573.6 NaN 3115 1933 5049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5051 32.543 NaN 34365 35 0 4120.9 0.261 -1 0 23 469.32877273477493 468.32149626817494 1 469.3284912109375 MULTI HCD FTMS 0 0 0 5049 11671.34765625 0.6632109182590016 -5 0.09960174560546875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 82469.5 NaN 3116 1933 5049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5052 32.546 NaN 58594 35 0 6119.7 0.261 + -1 MSWRRDDLN 9 34 403.5222353896303 NaN 0 403.52215576171875 PEAK HCD FTMS 0 0 0 5049 1720.3818359375 0.17584507491430942 1 -0.0233001708984375 3 Oxidation (M) _M(Oxidation (M))SWRRDDLN_ REV__ENSG00000162408|ENST00000377705|NOL9;REV__ENST00000460777.1_1_1:6609570-6610501:-|nuORF;REV__NOL9-DNAJC11|2|fusion 1.1933415558491238 0.28946407562688115 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99253.5 NaN 3117 1933 5049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5053 32.549 NaN 28842 35 0 3958 0.261 -1 VMMPYSTEL 9 23 543.7475947158997 NaN 0 543.7474975585938 PEAK HCD FTMS 0 0 0 5049 4763.42529296875 0.570486107862309 1 -0.0233001708984375 4 Oxidation (M) _VM(Oxidation (M))MPYSTEL_ ENSG00000117461|ENST00000262741|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;nc|ENSG00000117461|Q92569-3|PIK3R3;PIK3R3-ZSWIM5|1|fusion 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83427.4 NaN 3118 1933 5049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5054 32.553 NaN 14497 35 0 4151.9 0.261 + -1 KLGRECRRA 9 14 573.3194549213931 NaN 0 573.3191528320312 PEAK HCD FTMS 0 0 0 5049 6054.4599609375 0.7757334694838445 1 -0.0233001708984375 5 Carbamidomethyl (C) _KLGREC(Carbamidomethyl (C))RRA_ REV__ENSG00000154222|ENST00000284376|CC2D1B;REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF;REV__ENST00000491136.6_1_1:52823963-52826194:-|nuORF;REV__nc|ENSG00000154222|Q5T0F9|CC2D1B 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77751.5 NaN 3119 1933 5049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5055 32.556 NaN 35019 35 0 10035 0.261 -1 HPYILADRM 9 21 566.2839359225155 NaN 0 566.2844848632812 PEAK HCD FTMS 0 0 0 5049 10328.1083984375 1 0 0 6 Oxidation (M) _HPYILADRM(Oxidation (M))_ ENSG00000165733|ENST00000374518|BMS1;ENST00000433214.2_1_10:88753296-88760106:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107148 NaN 3120 1933 5049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5057 32.562 NaN 210930 35 0 43101 0.327 + 28005 TFRHNSALV 9 52 522.7812751585294 NaN 0 522.7952270507812 PEAK HCD FTMS 0 0 0 5056 9725.158203125 0.8923497824493718 4 -0.066375732421875 1 Unmodified _TFRHNSALV_ ENSG00000197385|ENST00000360311|ZNF860 3.5964929083625545 0.27781873954207675 1 VNASH 5 7 26.23 0 0 2.5135 0 0 131.0667079407695 401.21872888736567 532.2854368281352 0 0 0 0 0 0 0 0 0.7302046884880937 VNASH 2.5135 - 45 + NaN NaN 126471.8 NaN 3121 1934 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5058 32.566 NaN 51883 35 0 8122.1 0.261 -1 HVTQEDFEM 9 22 576.2374894889024 1150.4604260446047 2 576.2374877929688 MULTI HCD FTMS 0 0 0 5056 13554.38671875 0.038390446899501 27 -0.5870437622070312 2 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 7.608950283845883 0.29333554423920943 1 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 -1 33.175 0 0 2.8837 0 0 594.2770252912125 0 594.2770252912125 0 26.18562527100117 0 0 0 0.4247425010840047 0 0 0 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 2.8837 + + 12 NaN NaN 94622.1 NaN 3122 1934 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5060 32.571 NaN 379520 35 0 32482 0.327 + 21847 QAVQEATRL 9 65 508.2800671508965 1014.545581368593 2 508.2800598144531 MULTI HCD FTMS 0 0 0 5059 142258.390625 0.1094799657226709 -8 0.15630722045898438 1 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 57.24910588100465 0.021429789259086996 1 [QA]VQEATR{I|L} 9 0 + 58.539 0 0 5.77 5.77 87.59 0 0 0 33.79732026509308 11.39506772603255 11.39506772603255 9.208187539523749 0 1.4124379954164592 0 0.4247425010840047 0.3054621874040891 + + [QA]VQEATR{I|L};[QA]V[AG]EATR{I|L} 5.77;4.8624 +;- + 195 + NaN NaN 137870.9 NaN 3123 1935 5059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5061 32.576 NaN 179230 35 0 38188 0.261 + 3325 EEKPNNPEF 9 44 552.2538921130648 1102.4932312929295 2 552.2540283203125 MULTI HCD FTMS 0 0 0 5059 69754.125 0.5598750238205586 4 -0.06381988525390625 2 Unmodified _EEKPNNPEF_ ENSG00000119917|ENST00000371818|IFIT3 18.1463463914782 0.20357593197100715 1 N[EP]{M(Oxidation (M))|F} 4 5 18.984 0 0 1.722 0 0 597.2773632282796 0 597.2773632282796 0 10.912515900796718 0 0 0 0.3807196863200844 0 0.3494850021680094 0 + N[EP]{M(Oxidation (M))|F} 1.722 + + 14 + NaN NaN 110812.6 NaN 3124 1935 5059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5062 32.579 NaN 102570 35 0 13751 0.261 -1 0 40 492.7071996911429 983.3998464490858 2 492.70709228515625 MULTI HCD FTMS 0 0 0 5059 65218.9140625 0.467304340310451 14 -0.27342987060546875 3 NaN NaN 1 {[QG]|[NA]}D 3 -1 37.548 0 0 3.8182 0 0 0 680.2695723614482 680.2695723614482 10.02960906985031 0 0 0 0 1 1.5228787452803376 0 0.4247425010840047 {[QG]|[NA]}D 3.8182 - 15 NaN NaN 97584.4 NaN 3125 1935 5059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5063 32.583 NaN 36846 35 0 6075 0.261 + 30713 VPGPPQYR 8 18 457.24811453014297 912.481676127086 2 457.24786376953125 MULTI HCD FTMS 0 0 0 5059 14818.353515625 0.06961450012530064 18 -0.37345123291015625 4 Unmodified _VPGPPQYR_ ENST00000410074.5_2_8:25042331-25128363:+|nuORF 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91227.3 NaN 3126 1935 5059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5064 32.586 NaN 49352 35 0 9985 0.261 + 13960 KYRPALVQ 8 20 487.7927041592159 973.5708553852318 2 487.79254150390625 MULTI HCD FTMS 0 0 0 5059 16416.349609375 0.09115921930338378 18 -0.37345123291015625 5 Unmodified _KYRPALVQ_ REV__ENSG00000158042|ENST00000288937|MRPL17;REV__ENST00000529958.1_1_11:6703351-6704139:-|nuORF;REV__ENST00000532676.1_1_11:6702431-6703624:-|nuORF 2.302733041254933 0.5385759549224092 1 KY 2 -1 20.969 0 0 2.1538 0 0 0 679.3892305963499 679.3892305963499 15.484550065040281 0 0 0 0 0 0 0 0 KY 2.1538 + + 2 + NaN NaN 86690.9 NaN 3127 1935 5059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5065 32.589 NaN 45326 35 0 10033 0.261 + 22631 QVMQIIEHL 9 34 555.8024018104843 1109.5902506877685 2 555.8026733398438 MULTI HCD FTMS 0 0 0 5059 11848.2802734375 0.33709018693572596 -4 0.07619476318359375 6 Unmodified _QVMQIIEHL_ ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF;nc|ENSG00000108506|Q9H0H0|INTS2 4.3292370932331545 0.3181982124262546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84680.3 NaN 3128 1935 5059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5067 32.595 NaN 61594 35 0 12203 0.327 + 25238 SASFDHTI 8 30 439.206148247388 876.397743561576 2 439.205810546875 MULTI HCD FTMS 0 0 0 5066 30778.771484375 0.5284528016759473 -3 0.05649566650390625 1 Unmodified _SASFDHTI_ SMU1|p.Q329H|1|0.05|ENSG00000122692|chr9:33056845-33056845|C/G|missense_variant 24.67388899826682 0.4122521268485776 1 T{I|L} 2 6 34.464 0 0 3.9325 0 0 644.2563954084 0 644.2563954084 0 24.006375246153908 0 0 0 1 0 0.3494850021680094 0 + T{I|L} 3.9325 + + 10 NaN NaN 79239.6 NaN 3129 1936 5066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5068 32.599 NaN 34579 35 0 10682 0.261 + 33408 YGPEARCPSL 10 17 546.7606940675405 NaN 0 546.7604370117188 PEAK HCD FTMS 0 0 0 5066 6863.962890625 0.5607897829588856 -3 0.05649566650390625 2 Unmodified _YGPEARCPSL_ ENST00000556095.5_1_14:96830416-96830617:+|nuORF 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77639.8 NaN 3130 1936 5066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5070 32.605 NaN 46924 35 0 6141.2 0.327 -1 DTVTMQVTAR 10 22 569.2815365377082 1136.5485201422164 2 569.2818603515625 MULTI HCD FTMS 0 0 0 5069 35606.59375 1 0 0 1 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 18.721224879955976 0.3359999958351898 1 {[ES]|[DT]|[{I|L}C]}VT{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]}T{[QV]|[N{I|L}]|[RA]|[KV]} 11 -1 + 32.006 0 0 2.8161 2.8161 81.941 0 0 0 32.006372937951156 7.3675856522541885 7.3675856522541885 6.575773191777941 0 0.8494850021680094 0 0 0 {[ES]|[DT]|[{I|L}C]}VT{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]}T{[QV]|[N{I|L}]|[RA]|[KV]};{[ES]|[DT]|[{I|L}C]}V[RD]{[CT]|[{M(Oxidation (M))|F}G]}T{[QV]|[N{I|L}]|[RA]|[KV]};{[ES]|[DT]|[{I|L}C]}VT{[VA]|[{I|L}G]}[WQ]{[MS]|[{M(Oxidation (M))|F}A]} 2.8161;2.2375;1.2252 -;-;- 38 + NaN NaN 104533 NaN 3131 1937 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5071 32.609 NaN 83684 35 0 7380.5 0.261 + 9234 HPLSDHEATL 10 34 560.2751367728551 1118.5357206125102 2 560.2744750976562 MULTI HCD FTMS 0 0 0 5069 36381.26953125 0.006206559041372574 215 -5.593070983886719 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 13.90604991867851 0.3810395177745597 1 C{I|L} 2 9 19.693 0 0 1.7606 0 0 884.4268665998062 0 884.4268665998062 0 -0.22878745280337753 -0.22878745280337753 0 0 0.5 0 0 0 C{I|L} 1.7606 - 10 NaN NaN 96048.7 NaN 3132 1937 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5072 32.612 NaN 35717 35 0 4507.5 0.261 -1 KYMEDYHQF 9 20 638.7689735527658 1275.5233941723316 2 639.2706298828125 MULTI HCD FTMS 0 0 0 5069 16736.79296875 0.7910886144194029 1 -0.02313232421875 3 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 7.608950283845883 0.29333554423920943 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.3848384287583 0 982.3848384287583 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 3 NaN NaN 78937.5 NaN 3133 1937 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5073 32.616 NaN 55090 35 0 6644.9 0.264 + 731 ARAQVWSK 8 38 473.2663002593643 944.5180475855286 2 473.26580810546875 MULTI HCD FTMS 0 0 0 5069 16184.5146484375 0.1801393533178233 8 -0.14020156860351562 4 Unmodified _ARAQVWSK_ REV__ENST00000356731.9_1_5:179051335-179051632:-|nuORF 4.3292370932331545 0.5355693454741696 1 K 1 -1 15.485 0 0 1.6394 0 0 798.4124242718552 0 798.4124242718552 0 2.921656121837657 0 0 0 0 0 0 0 K 1.6394 + + 5 + NaN NaN 97799.2 NaN 3134 1937 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5074 32.619 NaN 29561 35 0 5778.9 0.261 -1 LECQMLASM 9 18 549.7349378910568 NaN 0 549.73486328125 PEAK HCD FTMS 0 0 0 5069 5866.826171875 0.41795287736327846 9 -0.1668853759765625 5 Carbamidomethyl (C),Oxidation (M) _LEC(Carbamidomethyl (C))QM(Oxidation (M))LASM_ ENST00000260197.11_1_11:121502781-121502922:+|nuORF 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82303.1 NaN 3135 1937 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5075 32.622 NaN 25976 35 0 2861.3 0.261 -1 0 24 586.3282141112193 1755.9628129338575 3 586.6629638671875 MULTI HCD FTMS 0 0 0 5069 4934.27734375 0.8562740158195552 2 -0.030651092529296875 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86031.8 NaN 3136 1937 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5077 32.628 NaN 161670 35 0 9879.3 0.327 -1 0 50 528.9266409364087 1583.758093409426 3 528.9266967773438 MULTI HCD FTMS 0 0 0 5076 55759.30078125 0.25102261640392703 10 -0.18384170532226562 1 NaN NaN 1 {[SA]|[TG]}QAK 5 -1 32.263 0 0 2.0371 0 0 0 1095.474426727374 1095.474426727374 4.08748409920328 0 0 0 0 0.805462187404089 0 0 0.5 {[SA]|[TG]}QAK 2.0371 - 58 + NaN NaN 118620 NaN 3137 1938 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5079 32.635 NaN 69148 35 0 13632 0.327 + 26492 SVDSTNFKG 9 36 477.7301417579619 953.4457305827239 2 477.73004150390625 MULTI HCD FTMS 0 0 0 5078 15866.013671875 0.539926439882114 1 -0.016326904296875 1 Unmodified _SVDSTNFKG_ REV__ENSG00000156515|ENST00000359426|HK1;REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF;REV__nc|ENSG00000156515|P19367-2|HK1;REV__nc|ENSG00000156515|P19367-3|HK1;REV__nc|ENSG00000156515|P19367-4|HK1 18.1463463914782 0.20357593197100715 1 [VS]D 3 -1 40.19 0 0 4.2152 0 0 0 649.2988985650999 649.2988985650999 36.2101498947667 0 0 0 0 0.8494850021680094 1.6989700043360187 0.4247425010840047 0 [VS]D 4.2152 + + 15 + NaN NaN 97645.8 NaN 3138 1939 5078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5080 32.639 NaN 47188 35 0 5008 0.261 + 28765 TTHQRIHT 8 29 497.2645065200007 992.5144601068014 2 497.2649841308594 MULTI HCD FTMS 0 0 0 5078 9379.0927734375 0.4961163806787898 2 -0.0329742431640625 2 Unmodified _TTHQRIHT_ ENSG00000184517|ENST00000570010|ZFP1;ENST00000568079.5_1_16:75182493-75204229:+|nuORF;nc|ENSG00000184517|Q6P2D0-2|ZFP1 2.302733041254933 0.5385759549224092 1 D 1 8 3.0989 0 0 0.31223 0 0 527.2748798839483 347.19098840885005 874.4658682927984 0 0 0 0 0 0 0 0 0 D 0.31223 - 4 + NaN NaN 87138.7 NaN 3139 1939 5078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5081 32.643 NaN 23456 35 0 5607.9 0.261 -1 LENREMQLE 9 16 589.2796750612275 1176.544797189255 2 589.2789916992188 MULTI HCD FTMS 0 0 0 5078 13392.3994140625 0.8551923195047126 16 -0.36299896240234375 3 Oxidation (M) _LENREM(Oxidation (M))QLE_ ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92195.4 NaN 3140 1939 5078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5082 32.646 NaN 16740 35 0 3843.1 0.261 -1 MHCPCLLSACC 11 13 627.2332007465116 1252.451848559823 2 627.233154296875 MULTI HCD FTMS 0 0 0 5078 5513.79052734375 0.06490034138270294 -22 0.4833564758300781 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))HC(Carbamidomethyl (C))PCLLSACC_ ENST00000556188.5_2_14:101010291-101035842:-|nuORF 0.3070304955306653 0.41757413505135293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93042 NaN 3141 1939 5078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5084 32.652 NaN 372290 35 0 52806 0.327 + 3509 EIASFDKAKLK 11 56 417.2431096081605 1248.7074994246816 3 417.2431640625 MULTI HCD FTMS 0 0 0 5083 123937.4375 0.7071713559438085 -1 0.016326904296875 1 Unmodified _EIASFDKAKLK_ ENSG00000034510|ENST00000233143|TMSB10 21.590151480376914 0.2689667140516965 1 ANK 3 9 21.682 0 0 1.7364 0 0 917.5323138717191 0 917.5323138717191 0 10.713337517843655 0 0 0 0 0 0 0 ANK 1.7364 - 38 NaN NaN 137367.6 NaN 3142 1940 5083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5085 32.656 NaN 128030 35 0 13762 0.261 -1 KYMEDYHQF 9 50 426.18155050194446 1275.5228221060333 3 426.1816711425781 MULTI HCD FTMS 0 0 0 5083 43785.46484375 0.757945421822832 5 -0.09322357177734375 2 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 12.872603262515298 0.2491399024913319 1 {M(Oxidation (M))|F} 1 -1 17.742 0 0 1.391 0 0 1110.4434286507583 0 1110.4434286507583 0 15.268024924119672 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.391 + + 14 + NaN NaN 98711 NaN 3143 1940 5083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5086 32.66 NaN 64194 35 0 8816.7 0.261 + 18992 NASQLITQR 9 34 515.7857644565901 1029.55697597998 2 515.7855224609375 MULTI HCD FTMS 0 0 0 5083 14721.3974609375 0.10693222221377309 8 -0.15999603271484375 3 Unmodified _NASQLITQR_ ENSG00000215021|ENST00000535923|PHB2;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2 10.150570793230772 0.27265765907388223 1 {[QG]|[NA]}SQ 4 5 19.693 0 0 1.9127 0 0 0 626.3621980390877 626.3621980390877 18.97940008672037 0 0 0 0 0.5 0 0 0 + {[QG]|[NA]}SQ 1.9127 + + 5 + NaN NaN 93643.8 NaN 3144 1940 5083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5087 32.663 NaN 33279 35 0 9890.1 0.261 + -1 IFDKCNIN 8 17 512.2497897102994 1022.4850264873988 2 512.249755859375 MULTI HCD FTMS 0 0 0 5083 7883.61376953125 0.5830329451632792 -5 0.08014678955078125 4 Carbamidomethyl (C) _IFDKC(Carbamidomethyl (C))NIN_ REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|3|1|sense 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92988.9 NaN 3145 1940 5083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5089 32.668 NaN 867530 35 0 282070 0.327 + 18804 NADPQAVTM 9 49 481.71612515155437 961.4176973699088 2 481.7159118652344 MULTI HCD FTMS 0 0 0 5088 486520.59375 0.33815159410181544 20 -0.4801750183105469 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 100.0907132914201 0.004261551473353346 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 87.871 0 0 9.1397 9.1397 98.667 0 0 0 0.5102999566398125 0.5102999566398125 0.5102999566398125 87.87069682934217 0 2.774227503252014 1.0457574905606752 0 1.079689690656103 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9.1397 + + 161 NaN NaN 223241.6 NaN 3146 1941 5088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5090 32.673 NaN 136110 35 0 14931 0.261 + 34639 YPSEQEKAL 9 41 532.7666252143707 1063.5186974955413 2 532.7666625976562 MULTI HCD FTMS 0 0 0 5088 108820.5 0.8714287296212623 3 -0.0599212646484375 2 Unmodified _YPSEQEKAL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 53.40400417844725 0.026808823219830042 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}QEKA{I|L} 9 0 + 52.074 0 0 4.8964 4.8964 90.94 0 0 0 0.8315904224961201 28.88621229653701 0.8315904224961201 52.073799922781134 0 1.5924778212679485 1.6989700043360187 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}QEKA{I|L} 4.8964 + + 49 NaN NaN 122066.3 NaN 3147 1941 5088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5091 32.676 NaN 43060 35 0 6146.9 0.261 + 15845 LPKEIVNQ 8 23 470.7768179742375 939.539083015275 2 470.7768249511719 MULTI HCD FTMS 0 0 0 5088 15522.5869140625 0.6230672723743426 -1 0.0166473388671875 3 Unmodified _LPKEIVNQ_ ENSG00000188306|ENST00000340806|LRRIQ4 7.289230182591677 0.5311777711368266 1 {I|L}PS 3 6 31.198 0 0 3.3206 0 0 0 639.3470553033811 639.3470553033811 31.197887582883936 0 0 0 0 0.5 0 0 0 {I|L}PS 3.3206 - 4 + NaN NaN 87818.6 NaN 3148 1941 5088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5092 32.68 NaN 52712 35 0 10336 0.261 + 8162 GPPDRDPTL 9 31 484.245852976903 966.477153020606 2 484.24603271484375 MULTI HCD FTMS 0 0 0 5088 27694.97265625 0.604719875219768 -6 0.09679412841796875 4 Unmodified _GPPDRDPTL_ ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 5.296884461304476 0.3108627248283497 1 D{[WT]|[RM]} 3 7 1.4609 0 0 0.15115 0 0 546.2997981395498 0 546.2997981395498 0 1.460872158338839 0 0 0 0 0 0 0 D{[WT]|[RM]} 0.15115 - 4 + NaN NaN 86377.1 NaN 3149 1941 5088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5094 32.685 NaN 179640 35 0 29227 0.327 -1 MGHSATPEL 9 42 500.72395494674714 999.4333569602943 2 500.723876953125 MULTI HCD FTMS 0 0 0 5093 84031.4609375 0.5264355022199704 -8 0.12354278564453125 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 26.88365393820708 0.12808753336095696 1 E{I|L} 2 -1 29.464 0 0 2.9481 0 0 739.2960197943783 0 739.2960197943783 0 19.21826823685329 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E{I|L} 2.9481 + + 10 NaN NaN 107673.7 NaN 3150 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5095 32.689 NaN 167710 35 0 19216 0.261 + 25096 SAEPSPTVM 9 43 467.7130900606113 933.4116271880226 2 467.71282958984375 MULTI HCD FTMS 0 0 0 5093 87010.7734375 0.28171829614721033 -7 0.11346817016601562 2 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 71.13359017698441 0.008721403657255008 1 {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 9 0 {[SA]|[TG]}E + + 50.52 27.447 9.5598 5.4125 5.4125 62.283 0 0 0 0 23.073193899842437 0 0 0 1.7059771852360797 0 0.805462187404089 0 + + {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 5.4125 + + 96 + NaN NaN 111822.9 NaN 3151 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5096 32.693 NaN 128140 35 0 32717 0.261 -1 YVCCQNAL 8 32 514.2195378024946 1026.4245226717892 2 514.229736328125 MULTI HCD FTMS 0 0 0 5093 5384.31689453125 0.4536881112370729 6 -0.12667465209960938 3 2 Carbamidomethyl (C) _YVC(Carbamidomethyl (C))C(Carbamidomethyl (C))QNAL_ ENST00000458039.3_1_18:9476245-9512991:+|nuORF 2.302733041254933 0.5385759549224092 1 A{I|L} 2 -1 20.969 0 0 2.0429 0 0 824.3026120568426 0 824.3026120568426 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 2.0429 + + 2 NaN NaN 103651.5 NaN 3152 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5097 32.696 NaN 68183 35 0 8397.4 0.261 -1 KYLEERAMRQF 11 29 496.25381801751394 1485.739624652742 3 496.2536926269531 MULTI HCD FTMS 0 0 0 5093 10484.462890625 0.20532518332807148 37 -0.9332122802734375 4 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.41447547578978133 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.0422 0 0 1320.6933580285215 0 1320.6933580285215 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0422 + + 2 + NaN NaN 95992.6 NaN 3153 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5098 32.7 NaN 21946 35 0 4761.6 0.261 -1 MFKTLHGSEL 10 20 589.7977672280141 1177.580981522828 2 589.797119140625 MULTI HCD FTMS 0 0 0 5093 9144.0068359375 0.6853243327512183 1 -0.02660369873046875 5 Oxidation (M) _M(Oxidation (M))FKTLHGSEL_ ENST00000450418.1_1_3:4024502-4025426:-|nuORF 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81492.1 NaN 3154 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5099 32.703 NaN 29222 35 0 4137.3 0.261 -1 CLKDSDPFI 9 24 547.7610585810362 NaN 0 547.7604370117188 PEAK HCD FTMS 0 0 0 5093 5099.66943359375 0.34199927592886553 -3 0.049648284912109375 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LKDSDPFI_ ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF 1.6526216038709556 0.28723846860855273 1 N 1 -1 5.4846 0 0 0.50156 0 0 164.11841735562854 812.3244112604124 976.442828616041 0 0 0 0 0 0 0 0 0 N 0.50156 - 2 + NaN NaN 79591.1 NaN 3155 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5100 32.706 NaN 55028 35 0 12412 0.261 + 27324 SYQREPYSP 9 26 563.7618306050799 1125.5091082769598 2 563.7619018554688 MULTI HCD FTMS 0 0 0 5093 17225.7421875 0.492537973582177 -3 0.049648284912109375 7 Unmodified _SYQREPYSP_ REV__ENSG00000198353|ENST00000430889|HOXC4 13.042465956692817 0.2476723265019929 1 Q[MT] 3 -1 23.952 0 0 2.1281 0 0 747.357013864575 0 747.357013864575 0 21.478174818886373 0 0 0 0.9247425010840047 0 0 0.4247425010840047 Q[MT] 2.1281 - 10 NaN NaN 113092 NaN 3156 1942 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5102 32.712 NaN 2088100 35 0 226370 0.327 + 21848 QAVQEATRL 9 104 508.2800671508965 1014.545581368593 2 508.2802429199219 MULTI HCD FTMS 0 0 0 5101 1299401.125 1 0 0 1 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 205.91287158822604 1.025073046229338E-17 1 QAVQEAT{I|L}R 9 2 + 106.98 0 0 10.545 10.545 94.11 0 0 0 10.40455756051189 10.40455756051189 10.40455756051189 9.208187539523749 0 1.9846368802282015 1.0969100130080565 0.9604093769761876 0.9731975075880328 QAVQEAT{I|L}R;QAV[AG]EAT{I|L}R;[QA]VQEATR{I|L};QA{I|L}NEAT{I|L}R;[QA]V[AG]EATR{I|L};QA{I|L}GGEAT{I|L}R;{[QV]|[N{I|L}]|[RA]|[KV]}AQEATR{I|L};[QA]EN{I|L}ATR{I|L};QAVQE{I|L}[TA]R;{[QV]|[N{I|L}]|[RA]|[KV]}A[AG]EATR{I|L} 10.545;9.6374;9.5195;8.9105;8.6119;8.0029;7.9637;7.4723;7.3805;7.0561 -;-;+;-;-;-;-;-;-;- + 2863 + NaN NaN 402711.7 NaN 3157 1943 5101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5103 32.716 NaN 147700 35 0 30037 0.261 -1 0 38 522.7822402433331 1043.5499275534662 2 522.7953491210938 MULTI HCD FTMS 0 0 0 5101 6072.70654296875 0.04923049176376197 -14 0.24966049194335938 2 NaN NaN 1 VN 2 -1 14.776 0 0 1.416 0 0 131.0682701440657 696.3470553033811 827.4153254474468 0 0 0 0 0 0 0 0 0.3807196863200844 VN 1.416 - 20 + NaN NaN 109991.5 NaN 3158 1943 5101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5104 32.72 NaN 84691 35 0 10091 0.261 + 29115 TYHGSSITI 9 30 489.7476991785086 977.4808454238172 2 489.747802734375 MULTI HCD FTMS 0 0 0 5101 29460.146484375 0.7346785169148635 -3 0.059925079345703125 3 Unmodified _TYHGSSITI_ REV__ENSG00000162607|ENST00000339950|USP1 15.847184025352803 0.2234401846867398 1 T{I|L} 2 -1 25.217 0 0 2.5797 0 0 745.3396901031095 0 745.3396901031095 0 18.226825097560422 0 0 0 0 0 0.4247425010840047 0 T{I|L} 2.5797 + + 6 NaN NaN 99778.2 NaN 3159 1943 5101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5105 32.723 NaN 33395 35 0 9210.1 0.261 + 24023 RWHGRFSW 8 22 566.2836303710938 NaN 0 566.2836303710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RWHGRFSW_ REV__ENST00000554614.2_1_14:73711044-73711323:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82177.3 NaN 3160 1943 5101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5107 32.728 NaN 83772 35 0 9143.5 0.327 + 22028 QGCWACLGF 9 46 492.7071996911429 983.3998464490858 2 492.70703125 MULTI HCD FTMS 0 0 0 5106 33630.08203125 0.24096511762123657 23 -0.5605278015136719 1 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 1 {[QG]|[NA]}C 3 6 31.21 0 0 3.1737 0 0 0 692.3003023736936 692.3003023736936 19.42741327719764 0 0 0 0 0.9247425010840047 1.3010299956639813 0 0 + {[QG]|[NA]}C 3.1737 + + 11 + NaN NaN 96806.8 NaN 3161 1944 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5108 32.733 NaN 34176 35 0 5667.3 0.261 + 5595 FLQLQWYL 8 20 555.8024018104843 1109.5902506877685 2 555.8019409179688 MULTI HCD FTMS 0 0 0 5106 17410.736328125 0.49534516639464526 5 -0.1167144775390625 2 Unmodified _FLQLQWYL_ REV__ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant;REV__ENSG00000187527|ENST00000342358|ATP13A5 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95938.9 NaN 3162 1944 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5109 32.736 NaN 32450 35 0 3605.8 0.261 -1 CALCWMLH 8 20 525.2218021842616 NaN 0 525.2268676757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))ALCWM(Oxidation (M))LH_ ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90148.4 NaN 3163 1944 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5110 32.74 NaN 14697 35 0 3131.3 0.261 -1 HPTDVDYRVM 10 13 624.7879526400686 1247.5613523469372 2 624.7877807617188 MULTI HCD FTMS 0 0 0 5106 5283.71044921875 0.5771545853462468 -1 0.016643524169921875 4 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 82162.4 NaN 3164 1944 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5112 32.745 NaN 156060 35 0 19871 0.327 -1 FPVQQLCDI 9 48 560.2796309305421 1118.5447089278841 2 560.2819213867188 MULTI HCD FTMS 0 0 0 5111 39357.28125 0.8122928144057265 2 -0.0500335693359375 1 Carbamidomethyl (C) _FPVQQLC(Carbamidomethyl (C))DI_ ENSG00000095951|ENST00000379388|HIVEP1 18.1463463914782 0.20357593197100715 1 D{[WN]|[YH]}T{I|L} 5 -1 31.466 0 0 2.8131 0 0 471.2441873686701 0 471.2441873686701 0 12.001962355242952 0 0 0 1 0 0.9247425010840047 0 D{[WN]|[YH]}T{I|L} 2.8131 - 34 NaN NaN 112301.6 NaN 3165 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5113 32.749 NaN 85104 35 0 13101 0.261 -1 SSGPVDPMM 9 27 476.6910442976 951.367535662 2 476.6911926269531 MULTI HCD FTMS 0 0 0 5111 22472.736328125 0.10654126793620392 -31 0.67608642578125 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7858 0 0 786.3216047311391 0 786.3216047311391 0 -4.69273760456403 -4.69273760456403 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7858 + + 8 + NaN NaN 98922 NaN 3166 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5114 32.753 NaN 77321 35 0 20860 0.261 -1 MMLRWFMK 8 24 579.7846974886105 1157.554842044021 2 579.7842407226562 MULTI HCD FTMS 0 0 0 5111 17921.38671875 0.7932874777162796 -3 0.059902191162109375 3 Oxidation (M) _MMLRWFM(Oxidation (M))K_ ENST00000285518.10_1_8:6605280-6605346:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94049.6 NaN 3167 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5115 32.756 NaN 45836 35 0 12676 0.264 -1 0 27 406.9960888751716 NaN 0 406.9959411621094 PEAK HCD FTMS 0 0 0 5111 13314.740234375 0.5464003915210619 221 -5.869171142578125 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90075.7 NaN 3168 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5116 32.76 NaN 28261 35 0 4078.2 0.261 + 4921 FAKNAEESKN 10 25 569.2815365377082 1136.5485201422164 2 569.2816772460938 MULTI HCD FTMS 0 0 0 5111 14558.4892578125 0.4088705973963741 8 -0.20008087158203125 5 Unmodified _FAKNAEESKN_ REV__ENSG00000196367|ENST00000456197|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5|TRRAP 2.9952420565917617 0.4594494122822477 1 N 1 -1 11.237 0 0 0.98871 0 0 676.3106794213164 343.1733797662719 1019.4840591875884 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.98871 + + 1 + NaN NaN 86568.3 NaN 3169 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5117 32.763 NaN 31304 35 0 3308.6 0.261 + -1 MYRVCYNM 8 26 548.2259506449024 NaN 0 548.2258911132812 PEAK HCD FTMS 0 0 0 5111 10820.1015625 0.8116341972473636 1 -0.026683807373046875 6 Oxidation (M) _MYRVCYNM(Oxidation (M))_ REV__ENSG00000185634|ENST00000332408|SHC4 4.75600775471527 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85732.6 NaN 3170 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5118 32.766 NaN 12204 35 0 3140.9 0.261 + 8018 GGEDCFFINQF 11 11 638.7689735527658 1275.5233941723316 2 638.769287109375 MULTI HCD FTMS 0 0 0 5111 2084.8173828125 0.07574914498696315 10 -0.253448486328125 7 Unmodified _GGEDCFFINQF_ ENSG00000069956|ENST00000261845|MAPK6 1.214830529360525 0.41359283248740725 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84142 NaN 3171 1945 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5120 32.772 NaN 145510 35 0 19891 0.327 + 20657 PFINDAGCVAL 11 43 560.2796309305421 1118.5447089278841 2 560.2797241210938 MULTI HCD FTMS 0 0 0 5119 40719.1953125 0.8404012856128646 3 -0.07337570190429688 1 Unmodified _PFINDAGCVAL_ REV__ENST00000299697.11_1_16:66545117-66545318:-|nuORF 20.41453444215458 0.279209903849948 1 DR[QT]E 5 -1 43.213 0 0 3.8634 0 0 471.2436920417911 0 471.2436920417911 0 22.01544993495972 0 0 0 1.3494850021680094 0 0 0.75 DR[QT]E 3.8634 - 45 NaN NaN 116658 NaN 3172 1946 5119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5121 32.776 NaN 66879 35 0 7432.6 0.261 -1 0 39 528.9266409364087 1583.758093409426 3 528.9266967773438 MULTI HCD FTMS 0 0 0 5119 30978.158203125 0.13946047053262361 18 -0.44365692138671875 2 NaN NaN 1 {[SA]|[TG]}QA 4 -1 20.005 0 0 1.2631 0 0 0 1223.5690633364306 1223.5690633364306 9.035984316004217 0 0 0 0 0.3807196863200844 0 0 0 {[SA]|[TG]}QA 1.2631 - 10 + NaN NaN 93733 NaN 3173 1946 5119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5122 32.78 NaN 66708 35 0 13118 0.262 + 31392 VYAHIYHQHF 10 28 438.88398716654524 1313.6301320998357 3 438.8839416503906 MULTI HCD FTMS 0 0 0 5119 18279.482421875 0.5735960935309449 1 -0.023349761962890625 3 Unmodified _VYAHIYHQHF_ ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;nc|ENSG00000173542|Q7L9L4-2|MOB1B 6.1918466704503565 0.44252927588099017 1 VY 2 8 40.969 0 0 3.1188 0 0 0 1048.4754446521565 1048.4754446521565 33.979400086720375 0 0 0 0 0 2 0 0 + VY 3.1188 + + 5 + NaN NaN 102561.6 NaN 3174 1946 5119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5123 32.783 NaN 123720 35 0 41179 0.261 -1 SIIQMCGVML 10 26 576.2833565048395 1150.552160076479 2 576.283203125 MULTI HCD FTMS 0 0 0 5119 29960.208984375 0.7700805391297276 -1 0.026683807373046875 4 Carbamidomethyl (C) _SIIQMC(Carbamidomethyl (C))GVML_ ENSG00000197386|ENST00000355072|HTT 3.5964929083625545 0.45626689593999237 1 E{M(Oxidation (M))|F}D 3 -1 13.188 0 0 1.1462 0 0 165.1373996283167 591.2530001275999 756.3903997559166 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}D 1.1462 - 9 + NaN NaN 96122.5 NaN 3175 1946 5119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5124 32.786 NaN 76209 35 0 13588 0.262 + -1 SAEIFETC 8 36 478.7044178073765 955.394282681553 2 478.70458984375 MULTI HCD FTMS 0 0 0 5119 23550.322265625 0.6235192551131851 -4 0.08658599853515625 5 Carbamidomethyl (C) _SAEIFETC(Carbamidomethyl (C))_ REV__ENSG00000139218|ENST00000369367|SCAF11;REV__SCAF11|p.I220V|1|0.22|ENSG00000139218|chr12:45933207-45933207|T/C|missense_variant 12.531546534597751 0.5015908124873912 1 {[SA]|[TG]}E 3 -1 21.695 0 0 2.2708 0 0 0 665.2586674732673 665.2586674732673 18.595756168365014 0 0 0 0 0.9247425010840047 0 0.5 0 {[SA]|[TG]}E 2.2708 + + 7 + NaN NaN 100969.6 NaN 3176 1946 5119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5125 32.79 NaN 38601 35 0 6402.5 0.261 + 28228 TLFYHAPP 8 24 473.2430044678738 NaN 0 473.2431335449219 PEAK HCD FTMS 0 0 0 5119 14388.3056640625 0.828048539918924 1 -0.023349761962890625 6 Unmodified _TLFYHAPP_ ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81459.7 NaN 3177 1946 5119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5127 32.795 NaN 35716 35 0 11725 0.326 + -1 MCCRTCMLF 9 17 627.2332007465116 1252.451848559823 2 627.2333984375 MULTI HCD FTMS 0 0 0 5126 32120.376953125 0.3780744696884915 -14 0.2567787170410156 1 2 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))CRTC(Carbamidomethyl (C))M(Oxidation (M))LF_ REV__ENSG00000114374|ENST00000338981|USP9Y;REV__ENSG00000124486|ENST00000378308|USP9X;REV__ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;REV__nc|ENSG00000114374|O00507-2|USP9Y;REV__nc|ENSG00000124486|Q93008-3|USP9X;REV__USP9X-BLVRB|1|fusion;REV__USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant;REV__USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 S 1 -1 5.4846 0 0 0.43791 0 0 720.2096133076731 442.1873873346313 1162.3970006423044 0 0 0 0 0 0 0 0 0 S 0.43791 - 1 + NaN NaN 92787.1 NaN 3178 1947 5126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5128 32.799 NaN 85584 35 0 6937.7 0.264 -1 KYMEDYHQF 9 46 426.18155050194446 1275.5228221060333 3 426.1816101074219 MULTI HCD FTMS 0 0 0 5126 12350.7841796875 0.21379744073339985 12 -0.3001670837402344 2 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 4.5288652416199255 0.31668488241058723 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.058 0 0 1110.4771047982192 0 1110.4771047982192 0 12.781512503836437 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.058 + + 5 + NaN NaN 102858.5 NaN 3179 1947 5126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5129 32.803 NaN 16879 35 0 4339 0.261 + 21353 PTHTAWPSWN 10 16 598.7753957685699 1195.5362386039396 2 598.7755737304688 MULTI HCD FTMS 0 0 0 5126 9138.0947265625 1 0 0 3 Unmodified _PTHTAWPSWN_ REV__chr1:17409194-17412122|185|14.32|0.75|4.25|-|1|RCC2,RCC2|1 1.3295316138638542 0.46826628246186464 1 [TP]D 3 -1 10.458 0 0 0.87472 0 0 0 879.3948458307249 879.3948458307249 10.45757490560675 0 0 0 0 0 0 0 0 [TP]D 0.87472 - 1 + NaN NaN 82547.1 NaN 3180 1947 5126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5130 32.806 NaN 17892 35 0 3452.1 0.261 + 29691 VCQRGMAALPS 11 17 566.785550047385 NaN 0 566.78564453125 PEAK HCD FTMS 0 0 0 5126 4812.2529296875 0.6607427395186347 3 -0.0766754150390625 4 Unmodified _VCQRGMAALPS_ ENST00000484373.5_1_22:20024321-20041279:+|nuORF 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86893.8 NaN 3181 1947 5126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5132 32.812 NaN 576210 35 0 183390 0.327 + 18805 NADPQAVTM 9 37 481.71612515155437 961.4176973699088 2 481.7159118652344 MULTI HCD FTMS 0 0 0 5131 288640.3125 0.20061675301678053 27 -0.6964988708496094 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 90.13494162714682 0.004522430935000059 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 88.918 0 0 9.2487 9.2487 98.785 0 0 0 0.44022814763920337 0.44022814763920337 0.44022814763920337 88.91827190205532 0 2.8494850021680094 1.3010299956639813 1.1549471895720984 0 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9.2487 + + 104 + NaN NaN 172288.6 NaN 3182 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5133 32.816 NaN 276360 35 0 47475 0.261 -1 MAHADPTEL 9 39 500.72395494674714 999.4333569602943 2 500.72393798828125 MULTI HCD FTMS 0 0 0 5131 135785.53125 0.8506614491799158 -2 0.040088653564453125 2 Oxidation (M) _M(Oxidation (M))AHADPTEL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 39.957323273324995 0.06554068735427583 1 E{I|L} 2 -1 29.464 0 0 2.9481 0 0 739.2958599118318 0 739.2958599118318 0 14.006375246153908 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E{I|L} 2.9481 + + 19 NaN NaN 124308.8 NaN 3183 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5134 32.82 NaN 62738 35 0 7278.8 0.261 + 8163 GPPDRDPTL 9 33 484.245852976903 966.477153020606 2 484.24566650390625 MULTI HCD FTMS 0 0 0 5131 43052.328125 0.9400478135440662 1 -0.03328704833984375 3 Unmodified _GPPDRDPTL_ ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 19.361941925380144 0.1930734562688509 1 [PG]PD 4 5 15.164 0 0 1.569 0 0 0 597.2988375299436 597.2988375299436 5.753800256993953 0 0 0 0 0.3252574989159953 0 0.5 0 + [PG]PD 1.569 + + 9 + NaN NaN 97965.6 NaN 3184 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5135 32.823 NaN 80738 35 0 12747 0.261 -1 0 37 494.1686473341288 986.3227417350577 2 494.1687316894531 MULTI HCD FTMS 0 0 0 5131 30599.583984375 0.8005479212665295 -1 0.0167388916015625 4 NaN NaN 1 D 1 -1 1.9897 0 0 0.20173 0 0 524.1834117563452 344.0824373834594 868.2658491398047 0 0 0 0 0 0 0 0 0 D 0.20173 - 1 + NaN NaN 91258.7 NaN 3185 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5136 32.826 NaN 119860 35 0 21351 0.261 + 30234 VIQENEHAL 9 35 526.7721836534824 1051.5298143737648 2 526.7719116210938 MULTI HCD FTMS 0 0 0 5131 31358.01953125 0.12843770505242783 -5 0.10007095336914062 5 Unmodified _VIQENEHAL_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant 43.77239144664712 0.04802738721622131 1 [{I|L}V]QE 4 5 45.802 0 0 4.3557 0 0 0 579.2525676298773 579.2525676298773 24.83288122256525 0 0 0 0 1.5 2 0 0 + [{I|L}V]QE 4.3557 + + 30 NaN NaN 98640.1 NaN 3186 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5137 32.83 NaN 36233 35 0 4680.1 0.261 + 19325 NNNNYKCC 8 25 486.6867256939991 971.3588984547982 2 486.68621826171875 MULTI HCD FTMS 0 0 0 5131 7947.69482421875 0.5791506699581637 1 -0.03328704833984375 6 Unmodified _NNNNYKCC_ ENSG00000163762|ENST00000296059|TM4SF18;ENST00000468398.1_1_3:149047933-149051100:-|nuORF;ENST00000491182.1_1_3:149042665-149051366:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85914.7 NaN 3187 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5138 32.833 NaN 22534 35 0 5940.5 0.261 + -1 IHCLMDYTK 9 19 598.7753957685699 1195.5362386039396 2 598.7738037109375 MULTI HCD FTMS 0 0 0 5131 8042.484375 0.8801051658637556 1 -0.03328704833984375 7 Carbamidomethyl (C),Oxidation (M) _IHC(Carbamidomethyl (C))LM(Oxidation (M))DYTK_ REV__tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82155.1 NaN 3188 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5139 32.836 NaN 24094 35 0 6813.8 0.261 + 1749 CLFAQYCRS 9 17 545.7438164762615 1089.4730800193229 2 545.7439575195312 MULTI HCD FTMS 0 0 0 5131 5166.9658203125 0.5970403753012017 1 -0.03328704833984375 8 Unmodified _CLFAQYCRS_ REV__ENSG00000162929|ENST00000402291|SANBR;REV__nc|ENSG00000162929|Q6NSI8-2|SANBR;REV__nc|ENSG00000162929|Q6NSI8-3|SANBR 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 84338.1 NaN 3189 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5140 32.84 NaN 13844 35 0 3712.1 0.261 + -1 LHNFVSDCEC 10 15 633.2501831054688 NaN 0 633.2501831054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LHNFVSDC(Carbamidomethyl (C))EC_ REV__ENSG00000137601|ENST00000507142|NEK1;REV__nc|ENSG00000137601|Q96PY6-2|NEK1;REV__nc|ENSG00000137601|Q96PY6-4|NEK1;REV__nc|ENSG00000137601|Q96PY6-6|NEK1;REV__nc|ENSG00000137601|Q96PY6|NEK1;REV__NEK1|p.E1204Q|1|0.17|ENSG00000137601|chr4:169400541-169400541|C/G|missense_variant 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95443.4 NaN 3190 1948 5131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5142 32.845 NaN 445210 35 0 63510 0.327 + 25097 SAEPSPTVM 9 56 467.7130900606113 933.4116271880226 2 467.7129211425781 MULTI HCD FTMS 0 0 0 5141 308857.375 1 0 0 1 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 149.9946105101851 8.83195450578534E-06 1 {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F} 9 0 + 103.48 0 0 11.087 11.087 98.376 0 0 0 2.438579521273155 2.438579521273155 2.438579521273155 33.68507386654376 0 3.1861818737241734 1.5228787452803376 1.6549471895720984 0 + + {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F};{[SA]|[TG]}EPT[PS]V{M(Oxidation (M))|F};{[SA]|[TG]}T[DP]PTV{M(Oxidation (M))|F};[PS]{[CP]|[EA]}SPTV{M(Oxidation (M))|F};[EP]{[SA]|[TG]}SPTV{M(Oxidation (M))|F};[PS]{I|L}{M(Oxidation (M))|F}SPE{[SA]|[TG]} 11.087;7.4777;7.0147;5.5704;5.2479;2.2862 +;-;-;-;-;- + 371 + NaN NaN 167090 NaN 3191 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5143 32.849 NaN 234350 35 0 56276 0.261 -1 SDMWMGRL 8 40 514.2182850567094 NaN 0 514.229248046875 PEAK HCD FTMS 0 0 0 5141 2580.440185546875 0.46411968567943773 -1 0.03328704833984375 2 2 Oxidation (M) _SDM(Oxidation (M))WM(Oxidation (M))GRL_ ENSG00000092439|ENST00000646667|TRPM7 4.75600775471527 0.38822285293237185 1 S{M(Oxidation (M))|F}V 3 -1 7.703 0 0 0.75047 0 0 448.1039261451047 242.12600122623283 690.2299273713376 0 0 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}V 0.75047 - 12 + NaN NaN 117957.7 NaN 3192 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5144 32.853 NaN 148430 35 0 23907 0.262 + 28583 TPVGKDPGL 9 32 442.248061776019 882.481570618838 2 442.2480773925781 MULTI HCD FTMS 0 0 0 5141 87618.546875 0.4767187196609267 -3 0.07337570190429688 3 Unmodified _TPVGKDPGL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 29.84058131909904 0.11198220037953927 1 TPVG 4 5 58.928 0 0 6.6775 0 0 0 525.2672823541624 525.2672823541624 58.92790030352131 0 0 0 0 1 1.6989700043360187 0 0 + TPVG 6.6775 + + 12 + NaN NaN 95827.9 NaN 3193 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5145 32.856 NaN 25497 35 0 3884.3 0.261 -1 MLWNLQML 8 23 532.7666252143707 1063.5186974955413 2 532.7666625976562 MULTI HCD FTMS 0 0 0 5141 13925.4296875 0.11151409432972957 11 -0.2702217102050781 4 Oxidation (M) _M(Oxidation (M))LWNLQML_ ENST00000338502.8_2_19:38887395-38887539:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88305.9 NaN 3194 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5146 32.86 NaN 46789 35 0 6517.2 0.261 -1 0 35 528.9266409364087 1583.758093409426 3 529.2623901367188 MULTI HCD FTMS 0 0 0 5141 10315.279296875 0.05650432881999653 20 -0.49379730224609375 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.92212 0 0 1418.7122235137213 0 1418.7122235137213 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.92212 - 1 + NaN NaN 90166 NaN 3195 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5147 32.863 NaN 62652 35 0 11715 0.261 + 19516 NRNIRTDTG 9 25 523.7726217900123 1045.5306906468245 2 523.773193359375 MULTI HCD FTMS 0 0 0 5141 8218.8017578125 0.9156823542288787 3 -0.073333740234375 6 Unmodified _NRNIRTDTG_ ENSG00000177599|ENST00000323169|ZNF491 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84656.1 NaN 3196 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5148 32.866 NaN 27665 35 0 5722.3 0.261 + 8625 HEEFYYMGK 9 23 602.2600966522812 1202.5056403713622 2 602.2600708007812 MULTI HCD FTMS 0 0 0 5141 12806.318359375 0.5623912789332807 -4 0.10005950927734375 7 Unmodified _HEEFYYMGK_ REV__ERBB3|p.L825F|1|0.31|ENSG00000065361|chr12:56097797-56097797|C/T|missense_variant 0.5247636613948944 0.34703895399870666 1 G 1 -1 3.9794 0 0 0.33093 0 0 660.2881243574935 482.1601656549438 1142.4482900124374 0 0 0 0 0 0 0 0 0 G 0.33093 + + 2 + NaN NaN 96372.3 NaN 3197 1949 5141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5150 32.872 NaN 671520 35 0 52509 0.327 + 21691 QAARDYTL 8 78 469.24044678090826 936.4663406286165 2 469.2402648925781 MULTI HCD FTMS 0 0 0 5149 430688.71875 0.9687097514256483 -1 0.02664947509765625 1 Unmodified _QAARDYTL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 88.95385435242217 0.022490312417040942 1 [QA]ARDYT{I|L} 8 0 + 57.137 0 0 6.1013 6.1013 90.123 0 0 0 7.948675378691199 7.948675378691199 7.948675378691199 13.610469015915783 0 1.8979400086720375 1.154901959985743 1.1237125054200234 1 + + [QA]ARDYT{I|L};[QA][VP]DHGT{I|L};[{I|L}T]{[HG]|PP}DA[NP]{I|L};{[SA]|[TG]}E[HV]A[NP]{I|L};[{I|L}T]E[HN][NP]{I|L};[QA][{I|L}T]D{[HG]|PP}[VP];[QA]AA[KS][SG]{[MS]|[{M(Oxidation (M))|F}A]} 6.1013;4.648;2.0635;2.0446;1.4563;0.50662;0.452 +;-;-;-;-;-;- + 655 NaN NaN 198692.5 NaN 3198 1950 5149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5151 32.876 NaN 370240 35 0 35949 0.261 + 21849 QAVQEATRL 9 62 508.2800671508965 1014.545581368593 2 508.280029296875 MULTI HCD FTMS 0 0 0 5149 174550.546875 0.13433153436357076 7 -0.18014144897460938 2 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 80.6760300276096 0.005633624786464751 1 [QA]VQEATR{I|L} 9 0 + 63.592 0 0 6.2681 6.2681 88.383 0 0 0 33.18127791232534 11.39506772603255 11.39506772603255 9.208187539523749 0 1.666386562212267 0 0.4247425010840047 0.3807196863200844 + + [QA]VQEATR{I|L};[QA]V[AG]EATR{I|L};[QA]{I|L}NEATR{I|L};[QA]{I|L}GGEATR{I|L};[QA]ENKK{[QG]|[NA]}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}ANKK{[QG]|[NA]}{I|L} 6.2681;5.3605;4.3319;3.4243;0.8907;0.33188 +;-;-;-;-;- + 390 + NaN NaN 140434.7 NaN 3199 1950 5149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5152 32.88 NaN 130400 35 0 25170 0.261 + 14418 LELSPGTSVAA 11 38 522.7822402433331 1043.5499275534662 2 522.7953491210938 MULTI HCD FTMS 0 0 0 5149 21936.69140625 0.17783736097868874 -7 0.16000747680664062 3 Unmodified _LELSPGTSVAA_ REV__ENSG00000151838|ENST00000537690|CCDC175 4.897010918128616 0.3974440401582579 1 [KT]WSV 5 -1 16.198 0 0 1.5522 0 0 0 439.21933923892817 439.21933923892817 0.6246936830414995 0 0 0 0 0 0 0 0 [KT]WSV 1.5522 - 29 + NaN NaN 116529 NaN 3200 1950 5149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5153 32.883 NaN 81663 35 0 6830.3 0.261 + 29487 TYVHSSATI 9 37 489.7476991785086 977.4808454238172 2 489.74822998046875 MULTI HCD FTMS 0 0 0 5149 18081.556640625 0.4509187088832733 4 -0.1033782958984375 4 Unmodified _TYVHSSATI_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 15.847184025352803 0.2234401846867398 1 [QA]H 3 8 5.6864 0 0 0.58174 0 0 0 638.3259976280569 638.3259976280569 1.7069622716897488 0 0 0 0 0 0 0 0 [QA]H 0.58174 - 11 + NaN NaN 87289.6 NaN 3201 1950 5149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5154 32.886 NaN 59658 35 0 11035 0.261 + 14765 LHYCLHHVH 9 24 579.7846974886105 1157.554842044021 2 579.7847900390625 MULTI HCD FTMS 0 0 0 5149 7175.5751953125 0.3176257528050254 2 -0.04668426513671875 5 Unmodified _LHYCLHHVH_ ENSG00000261609|ENST00000648994|GAN 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90508.1 NaN 3202 1950 5149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5155 32.89 NaN 40681 35 0 6020.6 0.261 -1 LSCCRKVCT 9 23 563.7618306050799 1125.5091082769598 2 563.76171875 MULTI HCD FTMS 0 0 0 5149 13120.2734375 0.3751497509604948 5 -0.126739501953125 6 2 Carbamidomethyl (C) _LSC(Carbamidomethyl (C))CRKVC(Carbamidomethyl (C))T_ ENST00000568327.5_1_16:71784215-71789954:-|nuORF 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90088.1 NaN 3203 1950 5149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5157 32.895 NaN 755690 35 0 166100 0.327 + 3904 EPQPGEARL 9 50 498.7591539901953 995.5037550471906 2 498.7591247558594 MULTI HCD FTMS 0 0 0 5156 358883.375 0.5928034800117773 -3 0.08324813842773438 1 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 43.77239144664712 0.04802738721622131 1 [EP]QP{[DA]|[EG]}A[R{I|L}] 9 0 + 38.733 0 0 3.8908 3.8908 81.266 0 0 0 7.52120593621833 4.640880705410176 4.640880705410176 3.182503180159344 0 0.7059771852360797 0 0.7742275032520141 0.3807196863200844 + + [EP]QP{[DA]|[EG]}A[R{I|L}];[EP]QE[PG]A[R{I|L}];[EP][AG]P{[DA]|[EG]}A[R{I|L}];[EP]QE[QP][R{I|L}];{[DA]|[EG]}PAR{I|L}Q[EP];[QP]ER{I|L}Q[EP];[EP][AG]E[PG]A[R{I|L}];{[DA]|[EG]}PAR{I|L}E[QP];[QP]ER{I|L}E[QP];[EP][AG]E[QP][R{I|L}] 3.8908;3.5711;2.9658;2.896;2.7414;2.6724;2.6461;2.5645;2.4955;1.9656 +;-;-;-;-;-;-;-;-;- + 388 + NaN NaN 194939.5 NaN 3204 1951 5156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5158 32.899 NaN 73021 35 0 6373.4 0.261 + -1 HPCPRGLWP 9 29 560.2796309305421 1118.5447089278841 2 560.2769775390625 MULTI HCD FTMS 0 0 0 5156 27613.296875 0.5699093514904463 8 -0.2001800537109375 2 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))PRGLWP_ REV__ENST00000265465.7_1_11:65029470-65029812:+|nuORF 7.910154910731844 0.2910521888787154 1 D 1 -1 10.485 0 0 0.93734 0 0 532.2723833437029 468.2219637506469 1000.4943470943499 0 0 0 0 0 0.5 0 0 0 D 0.93734 - 6 + NaN NaN 95927.9 NaN 3205 1951 5156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5159 32.903 NaN 47987 35 0 8173.4 0.264 + -1 MWPLLYHLM 9 34 407.2039165900081 NaN 0 407.20391845703125 PEAK HCD FTMS 0 0 0 5156 15956.6416015625 0.724561569681688 83 -2.1538047790527344 3 Oxidation (M) _MWPLLYHLM(Oxidation (M))_ REV__ENSG00000075539|ENST00000358350|FRYL 1.1933415558491238 0.28946407562688115 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87706.6 NaN 3206 1951 5156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5160 32.906 NaN 24168 35 0 4457.6 0.261 + 358 AHDNVDRVTI 10 25 570.2938847682528 NaN 0 570.2940063476562 PEAK HCD FTMS 0 0 0 5156 9019.9970703125 0.6774875955610864 2 -0.050060272216796875 4 Unmodified _AHDNVDRVTI_ REV__ENSG00000166341|ENST00000299441|DCHS1 4.189502756095605 0.3365986553207265 1 D 1 -1 5.4846 0 0 0.4817 0 0 208.09617910506182 812.4289034479124 1020.5250825529743 0 0 0 0 0 0 0 0 0 D 0.4817 + + 1 + NaN NaN 85877.4 NaN 3207 1951 5156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5161 32.91 NaN 21096 35 0 5597.4 0.261 + 10836 ITWRRRQY 8 20 589.8295050227956 NaN 0 589.828857421875 PEAK HCD FTMS 0 0 0 5156 2069.23046875 0.25984128517011185 1 -0.023372650146484375 5 Unmodified _ITWRRRQY_ REV__nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;REV__nc|ENSG00000290456|Q8N1L4|CYP4Z2P 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88235.5 NaN 3208 1951 5156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5162 32.913 NaN 30916 35 0 9710.2 0.261 + -1 RMLLCQKP 8 23 544.2908935546875 NaN 0 544.2908935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))RMLLC(Carbamidomethyl (C))QKP_ REV__ENSG00000083750|ENST00000374941|RRAGB;REV__nc|ENSG00000083750|Q5VZM2|RRAGB 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75458.3 NaN 3209 1951 5156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5164 32.918 NaN 71950 35 0 7915.9 0.327 + 21768 QAGPEPAAQL 10 29 491.25322804702677 980.4919031608536 2 491.7514343261719 MULTI HCD FTMS 0 0 0 5163 28316.275390625 0.33457353193126577 -8 0.1900482177734375 1 Unmodified _QAGPEPAAQL_ REV__ENSG00000139540|ENST00000454355|SLC39A5 6.2057823575117 0.44245551207394906 1 QAV 3 -1 16.198 0 0 1.652 0 0 130.09913578669688 549.2075899713499 679.3067257580467 0 0 0 0 0 0 0 0 0 QAV 1.652 - 14 + NaN NaN 94966.5 NaN 3210 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5165 32.923 NaN 86904 35 0 7457.9 0.261 -1 LPDDPAKTTM 10 36 552.7659068832946 1103.5172608333892 2 553.2671508789062 MULTI HCD FTMS 0 0 0 5163 22999.755859375 0.2545873336787248 -9 0.20669174194335938 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 8.97624648632007 0.42715123575657504 1 {I|L}PDD 4 -1 33.928 0 0 3.0745 0 0 0 660.3034923044438 660.3034923044438 26.938200260161125 0 0 0 0 0.5 0 0 0 {I|L}PDD 3.0745 + + 9 + NaN NaN 93248.7 NaN 3211 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5166 32.926 NaN 79654 35 0 6280.5 0.261 + -1 HLCLTFDTI 9 31 560.2796309305421 1118.5447089278841 2 560.2755126953125 MULTI HCD FTMS 0 0 0 5163 25479.416015625 0.5258682990138293 9 -0.23020553588867188 3 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))LTFDTI_ REV__ENST00000507668.6_1_5:79438544-79438895:-|nuORF 10.823927491677226 0.26684000660059787 1 T{I|L} 2 -1 19.949 0 0 1.7834 0 0 886.3929249349355 0 886.3929249349355 0 5.969100130080562 0 0 0 0 0 0.5 0 T{I|L} 1.7834 + + 6 NaN NaN 97037.1 NaN 3212 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5167 32.93 NaN 228100 35 0 24055 0.262 + 3791 EPEEESERHIL 11 39 456.55259995686276 1366.6359704707884 3 456.5526123046875 MULTI HCD FTMS 0 0 0 5163 42429.9296875 0.10933576336099157 -5 0.12335968017578125 4 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 5.198440282359431 0.39612207336387734 1 EEE[HA] 5 7 30.713 0 0 2.2474 0 0 753.4111902130797 0 753.4111902130797 0 13.661968799114845 0 0 0 0 0 0.8494850021680094 0 EEE[HA] 2.2474 - 32 NaN NaN 116303.5 NaN 3213 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5168 32.933 NaN 63100 35 0 10886 0.261 + 7263 FTAVKENV 8 30 454.24787095856954 906.4811889839391 2 454.2481689453125 MULTI HCD FTMS 0 0 0 5163 16681.865234375 0.4903013375212843 -3 0.073333740234375 5 Unmodified _FTAVKENV_ tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 14.838274106304384 0.4846187982323419 1 ATE 3 6 28.188 0 0 3.1096 0 0 587.3285127734869 0 587.3285127734869 0 17.730012720637376 0 0 0 0.5 0 0 0 ATE 3.1096 - 9 NaN NaN 85584.1 NaN 3214 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5169 32.936 NaN 45237 35 0 6748.1 0.261 -1 LHLKCKLGM 9 25 529.7960047770526 NaN 0 529.7960815429688 PEAK HCD FTMS 0 0 0 5163 8077.4716796875 0.6802031629867182 1 -0.0266876220703125 6 Oxidation (M) _LHLKCKLGM(Oxidation (M))_ ENSG00000151164|ENST00000409300|RAD9B;ENST00000409461.5_1_12:110940142-110945898:+|nuORF;ENST00000433301.5_1_12:110943436-110952922:+|nuORF;nc|ENSG00000151164|Q6WBX8-1|RAD9B;nc|ENSG00000151164|Q6WBX8-2|RAD9B;nc|ENSG00000151164|Q6WBX8|RAD9B 2.0597508629832335 0.2852655770354268 1 V 1 -1 6.9897 0 0 0.66092 0 0 166.13026984596576 789.3501680963499 955.4804379423156 0 0 0 0 0 0 0 0 0 V 0.66092 - 4 + NaN NaN 79424.7 NaN 3215 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5170 32.94 NaN 27769 35 0 9520.9 0.261 + 14922 LLDRVWYF 8 17 556.3029177473603 NaN 0 556.7339477539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LLDRVWYF_ REV__ENST00000389010.7_1_4:79791948-79793049:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102685.5 NaN 3216 1952 5163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5172 32.945 NaN 218130 35 0 40511 0.327 + 15672 LPEKTQESL 9 51 522.7822402433331 1043.5499275534662 2 522.781982421875 MULTI HCD FTMS 0 0 0 5171 75175.8984375 0.6094393698549242 -4 0.1000213623046875 1 Unmodified _LPEKTQESL_ ENSG00000076554|ENST00000518937|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327|TPD52 15.738622578938676 0.22437813149664254 1 {I|L}PEKE 5 4 33.928 0 0 3.2512 0 0 0 444.19698722035395 444.19698722035395 20.344406447039063 0 0 0 0 0 0 0.3494850021680094 0 {I|L}PEKE 3.2512 - 81 + NaN NaN 110241.4 NaN 3217 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5173 32.949 NaN 179860 35 0 39320 0.261 -1 SSGPVDPMM 9 32 476.6910442976 951.367535662 2 476.6910705566406 MULTI HCD FTMS 0 0 0 5171 68503.09375 0.3247671471383558 -23 0.4630470275878906 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 28.486842064014134 0.11819662193267319 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 25.93 0 0 2.7255 0 0 427.20661249164164 0 427.20661249164164 0 18.940162615404077 0 0 0 0.9247425010840047 0 0.3494850021680094 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.7255 + + 9 NaN NaN 123116.3 NaN 3218 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5174 32.953 NaN 65775 35 0 18518 0.261 + -1 WWPCMWCPE 9 26 627.2332007465116 1252.451848559823 2 627.2335205078125 MULTI HCD FTMS 0 0 0 5171 45384.47265625 0.5342001576333987 -8 0.20008087158203125 3 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 2.302733041254933 0.33356062215410776 1 PE 2 -1 17.959 0 0 1.4339 0 0 1008.3645213963141 0 1008.3645213963141 0 10.969100130080562 0 0 0 0 0 0 0 PE 1.4339 + + 4 NaN NaN 96552.4 NaN 3219 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5175 32.956 NaN 71136 35 0 9962.2 0.262 + 32669 WPCANFQR 8 38 511.239495231674 NaN 0 511.2565002441406 PEAK HCD FTMS 0 0 0 5171 2355.8798828125 0.6415295842579307 4 -0.10676956176757812 4 Unmodified _WPCANFQR_ REV__ENSG00000198133|ENST00000554480|TMEM229B 4.75600775471527 0.38822285293237185 1 Q{M(Oxidation (M))|F}{I|L}Q 4 -1 15.433 0 0 1.5124 0 0 192.09012219987306 309.0836275690063 501.17374976887936 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}{I|L}Q 1.5124 - 19 + NaN NaN 85357 NaN 3220 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5176 32.96 NaN 54033 35 0 11102 0.261 + 31393 VYAHIYHQHF 10 27 438.88398716654524 1313.6301320998357 3 438.88421630859375 MULTI HCD FTMS 0 0 0 5171 18446.443359375 0.5788351992841613 8 -0.20351791381835938 5 Unmodified _VYAHIYHQHF_ ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;nc|ENSG00000173542|Q7L9L4-2|MOB1B 3.5870582119611467 0.4563168352879256 1 VY 2 8 44.776 0 0 3.4086 0 0 0 1048.4750229230249 1048.4750229230249 39.291746928241125 0 0 0 0 0.3807196863200844 2 0 0 + VY 3.4086 + + 4 + NaN NaN 98472.8 NaN 3221 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5177 32.963 NaN 71711 35 0 14002 0.261 + 22199 QLNSVESTGRA 11 28 581.2968183791822 1160.5790838251644 2 581.2962646484375 MULTI HCD FTMS 0 0 0 5171 33515.48828125 0.44339685337850143 -3 0.07337188720703125 6 Unmodified _QLNSVESTGRA_ REV__nc|ENSG00000149150|O75387-2|SLC43A1 13.614867670302875 0.33845562336951207 1 [NS]{I|L}GEAVS 8 -1 57.172 0 0 4.9262 0 0 0 400.1950777643188 400.1950777643188 48.21964723176244 0 0 0 0 1.6989700043360187 0 0.3807196863200844 0 [NS]{I|L}GEAVS 4.9262 - 45 + NaN NaN 105665.6 NaN 3222 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5178 32.966 NaN 38968 35 0 4822.8 0.262 + -1 SAEIFETC 8 21 478.7044178073765 955.394282681553 2 478.704345703125 MULTI HCD FTMS 0 0 0 5171 18135.30859375 0.4801511409518136 3 -0.08009719848632812 7 Carbamidomethyl (C) _SAEIFETC(Carbamidomethyl (C))_ REV__ENSG00000139218|ENST00000369367|SCAF11;REV__SCAF11|p.I220V|1|0.22|ENSG00000139218|chr12:45933207-45933207|T/C|missense_variant 4.75600775471527 0.5349361699807423 1 {[SA]|[TG]}E 3 -1 14.705 0 0 1.5392 0 0 0 665.256263611605 665.256263611605 14.704999916446797 0 0 0 0 0.4247425010840047 0 0 0 {[SA]|[TG]}E 1.5392 + + 1 + NaN NaN 79577.3 NaN 3223 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5179 32.97 NaN 61989 35 0 8904.1 0.261 + 26444 STMSTNGIPR 10 35 532.2636850780813 1062.5128172229624 2 532.765869140625 MULTI HCD FTMS 0 0 0 5171 16808.23046875 0.3515561495836343 -6 0.15004730224609375 8 Unmodified _STMSTNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 7.608950283845883 0.4350283211712914 1 {[MG]|[TS]}M 3 7 7.4473 0 0 0.70091 0 0 0 740.3673800104124 740.3673800104124 1.2493873660830008 0 0 0 0 0 0 0 0 + {[MG]|[TS]}M 0.70091 + + 15 + NaN NaN 86810.2 NaN 3224 1953 5171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5181 32.975 NaN 337660 35 0 65637 0.327 + 30235 VIQENEHAL 9 43 526.7721836534824 1051.5298143737648 2 526.7720947265625 MULTI HCD FTMS 0 0 0 5180 210219.484375 0.8610272119871157 1 -0.0233612060546875 1 Unmodified _VIQENEHAL_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant 67.83816525789305 0.009787749748478139 1 V{I|L}QENEHA{I|L} 9 0 + 98.114 0 0 9.3306 9.3306 93.288 0 0 0 68.5616031431335 9.009461452434238 9.009461452434238 9.208187539523749 0 2.1989700043360187 2 0.8494850021680094 0.3807196863200844 + + V{I|L}QENEHA{I|L};V{I|L}QEGGEHA{I|L};V{I|L}[AG]ENEHA{I|L};V{I|L}[AG]EGGEHA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[H{I|L}]{[DA]|[EG]}QV{I|L} 9.3306;8.4549;8.4549;7.2213;0.96272 +;-;-;-;- + 126 + NaN NaN 123045.2 NaN 3225 1954 5180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5182 32.979 NaN 368100 35 0 109510 0.261 + 18806 NADPQAVTM 9 38 481.71612515155437 961.4176973699088 2 481.7159729003906 MULTI HCD FTMS 0 0 0 5180 186163.125 0.1293909410833147 33 -0.8631553649902344 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 90.13494162714682 0.004522430935000059 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 90.626 0 0 9.4263 9.4263 98.929 0 0 0 6.3071968632008435 6.3071968632008435 6.3071968632008435 90.62645944157907 0 2.8494850021680094 1.2218487496163564 0.3494850021680094 1.055462187404089 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9.4263 + + 106 NaN NaN 156659.7 NaN 3226 1954 5180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5183 32.983 NaN 84499 35 0 14813 0.261 + 19000 NATAWFFE 8 33 493.224039610673 984.433526288146 2 493.22418212890625 MULTI HCD FTMS 0 0 0 5180 29977.908203125 0.7078055811570949 1 -0.0233612060546875 3 Unmodified _NATAWFFE_ REV__ENSG00000109927|ENST00000392793|TECTA 23.1484247019978 0.4234759064137959 1 {[QG]|[NA]}T 3 -1 41.21 0 0 4.1862 0 0 0 695.2828359407429 695.2828359407429 32.25772496747986 0 0 0 0 1 1.3010299956639813 0.4247425010840047 0.3494850021680094 {[QG]|[NA]}T 4.1862 + + 7 NaN NaN 118488.5 NaN 3227 1954 5180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5184 32.986 NaN 83688 35 0 4938.3 0.261 -1 WLSPWSTCP 9 38 559.7524329913829 1117.4903130495657 2 560.2739868164062 MULTI HCD FTMS 0 0 0 5180 5405.1669921875 0.3141847174592168 -18 0.3803367614746094 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WLSPWSTCP_ ENST00000373137.2_1_1:36793434-36793755:+|nuORF 3.944395688203298 0.32111559684428237 1 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 10.458 0 0 0.93581 0 0 752.3888416974625 0 752.3888416974625 0 3.9916623986031396 0 0 0 0 0 0 0 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 0.93581 - 21 NaN NaN 90707.6 NaN 3228 1954 5180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5185 32.99 NaN 35557 35 0 7594.4 0.261 -1 RFDHVITNM 9 20 574.7796432045966 1147.544733475993 2 574.7794799804688 MULTI HCD FTMS 0 0 0 5180 11813.1748046875 0.42206709087754934 -2 0.05669403076171875 5 Oxidation (M) _RFDHVITNM(Oxidation (M))_ ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB 17.44264345198275 0.2096557692338702 1 V{I|L}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 5 -1 39.961 0 0 3.4823 0 0 555.2557850568375 0 555.2557850568375 0 39.9607625286837 0 0 0 1.5 0 0.4247425010840047 0 V{I|L}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3.4823 + + 13 NaN NaN 103501.9 NaN 3229 1954 5180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5186 32.993 NaN 65000 35 0 8500.5 0.264 -1 FLTKNCKQE 9 41 403.86930580811554 1208.5860880245466 3 403.8692932128906 MULTI HCD FTMS 0 0 0 5180 5068.84716796875 0.37154892717518634 -3 0.08006668090820312 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))FLTKNC(Carbamidomethyl (C))KQE_ nc|ENSG00000084453|P46721-2|SLCO1A2 2.282774691075616 0.33371192131023203 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87292.5 NaN 3230 1954 5180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5188 32.998 NaN 176640 35 0 30724 0.327 + 28584 TPVGKDPGL 9 37 442.248061776019 882.481570618838 2 442.2479553222656 MULTI HCD FTMS 0 0 0 5187 116315.984375 0.6328569592287061 3 -0.07010269165039062 1 Unmodified _TPVGKDPGL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 36.506200033944 0.08138327636155518 1 TPVG[VS]G 7 4 63.716 0 0 7.2201 0 0 0 282.1451510065063 282.1451510065063 48.23145724778165 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 TPVG[VS]G 7.2201 - 91 + NaN NaN 110930.3 NaN 3231 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5189 33.003 NaN 64226 35 0 9869.3 0.261 + 27542 TAAGQGILSR 10 24 487.2751410095973 972.5357290859946 2 487.2750244140625 MULTI HCD FTMS 0 0 0 5187 39402.21875 0.9133677825085756 2 -0.053401947021484375 2 Unmodified _TAAGQGILSR_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST 18.721224879955976 0.3359999958351898 1 [TA]A{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 47.42 0 0 4.8759 4.8759 84.116 0 0 0 40.430599746173215 7.269987279362624 7.269987279362624 6.5321251377534395 0 1.3494850021680094 1.6989700043360187 0 0 + + [TA]A{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[TA]QQ{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.8759;4.2043 +;- + 23 + NaN NaN 102148.1 NaN 3232 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5190 33.006 NaN 19761 35 0 4566.1 0.261 + -1 STQLMERCY 9 12 602.2600966522812 1202.5056403713622 2 602.2603759765625 MULTI HCD FTMS 0 0 0 5187 15338.2783203125 0.6735826581165946 2 -0.053401947021484375 3 Carbamidomethyl (C),Oxidation (M) _STQLM(Oxidation (M))ERC(Carbamidomethyl (C))Y_ REV__ENST00000439586.1_1_Y:7937590-7937806:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83780.3 NaN 3233 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5191 33.01 NaN 63284 35 0 5809.6 0.262 + 23634 RPSKDYLL 8 34 496.2822938437916 990.5500347543832 2 496.2820129394531 MULTI HCD FTMS 0 0 0 5187 20722.232421875 0.8873462835571789 -1 0.0233612060546875 4 Unmodified _RPSKDYLL_ ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;ENST00000498778.5_1_7:131151082-131172419:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 8.745405648335112 0.5290173259557154 1 DY{I|L}{I|L} 4 4 22.423 0 0 2.2637 0 0 468.283983299025 0 468.283983299025 0 22.422750325201406 0 0 0 0 0 0 0 + DY{I|L}{I|L} 2.2637 + + 12 NaN NaN 103836.1 NaN 3234 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5192 33.013 NaN 42734 35 0 6474.3 0.261 -1 0 30 528.9266409364087 1583.758093409426 3 529.2623291015625 MULTI HCD FTMS 0 0 0 5187 7170.48095703125 0.039277968354803613 26 -0.6765556335449219 5 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.1339 0 0 1319.6434521514166 0 1319.6434521514166 0 10.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.1339 - 13 + NaN NaN 87624.4 NaN 3235 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5193 33.016 NaN 25656 35 0 5279.9 0.261 + 5571 FLLQTGTRAS 10 21 547.3036567746536 1092.5927606161072 2 547.3036499023438 MULTI HCD FTMS 0 0 0 5187 11778.0048828125 0.3035869324992461 -4 0.10342788696289062 6 Unmodified _FLLQTGTRAS_ ENST00000377269.3_1_X:47071876-47072398:+|nuORF 2.9952420565917617 0.4594494122822477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96162.2 NaN 3236 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5194 33.02 NaN 18548 35 0 3709.4 0.261 + -1 LFMWWNKMV 9 21 635.8090292422901 1269.60350555138 2 636.3101806640625 MULTI HCD FTMS 0 0 0 5187 4692.306640625 0.7969492189148891 1 -0.026729583740234375 7 Oxidation (M) _LFMWWNKM(Oxidation (M))V_ REV__chr12:77034042-77043065|475|16.38|0.51|5.0|-|0|E2F7,E2F7|1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77479 NaN 3237 1955 5187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5196 33.025 NaN 224710 35 0 20483 0.327 + 21692 QAARDYTL 8 46 469.24044678090826 936.4663406286165 2 469.24029541015625 MULTI HCD FTMS 0 0 0 5195 151347.859375 0.3404132517319627 5 -0.12342071533203125 1 Unmodified _QAARDYTL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 29.081581746732265 0.3711897268585781 1 [QA]ADRYT{I|L} 8 2 + 20.76 0 0 2.2169 2.2169 86.736 0 0 0 5.482648362206213 0.9395494044363843 0.9395494044363843 20.760168315118868 0 0.9489700043360187 0 0.23965182871044374 0 [QA]ADRYT{I|L} 2.2169 - 54 + NaN NaN 116215.4 NaN 3238 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5197 33.03 NaN 196930 35 0 16489 0.261 + 21837 QATREYTL 8 51 491.25322804702677 980.4919031608536 2 491.2536315917969 MULTI HCD FTMS 0 0 0 5195 100683.328125 0.5706716802363266 -2 0.050090789794921875 2 Unmodified _QATREYTL_ ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 25.399314129420986 0.40691472774782006 1 PT{I|L} 3 6 23.416 0 0 2.3882 0 0 651.2974110334 0 651.2974110334 0 12.931825014007217 0 0 0 0.5 0 0 0 PT{I|L} 2.3882 - 27 NaN NaN 121662.5 NaN 3239 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5198 33.033 NaN 124280 35 0 19326 0.261 + 21850 QAVQEATRL 9 48 508.2800671508965 1014.545581368593 2 508.2799987792969 MULTI HCD FTMS 0 0 0 5195 57720.91015625 0.044421163754379545 13 -0.3136787414550781 3 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 17.44264345198275 0.2096557692338702 1 [QA]VQEATR{I|L} 9 0 + 38.35 0 0 3.78 3.78 85.189 0 0 0 15.079015433336174 9.889917747712651 9.889917747712651 9.208187539523756 0 0.4247425010840047 0 0 0 + + [QA]VQEATR{I|L};[QA]V[AG]EATR{I|L} 3.78;2.8724 +;- + 51 + NaN NaN 94321.4 NaN 3240 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5199 33.036 NaN 24070 35 0 4384.1 0.261 + 35883 YYRYQLNL 8 23 566.7923262776459 1131.5700996220917 2 566.789306640625 MULTI HCD FTMS 0 0 0 5195 8481.560546875 0.22618602160730786 -13 0.3134765625 4 Unmodified _YYRYQLNL_ ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89242.7 NaN 3241 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5200 33.04 NaN 49764 35 0 8289.3 0.263 -1 HNIDNVCIDSM 11 36 426.18155050194446 1275.5228221060333 3 426.5161437988281 MULTI HCD FTMS 0 0 0 5195 7254.71875 0.16299671129309934 20 -0.5097618103027344 5 Oxidation (M) _HNIDNVCIDSM(Oxidation (M))_ ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 1.214830529360525 0.41359283248740725 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.332 0 0 1110.4764334115005 0 1110.4764334115005 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.332 + + 3 + NaN NaN 84829.8 NaN 3242 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5201 33.043 NaN 24498 35 0 6298.7 0.261 -1 LMWIYHPCV 9 21 589.2796478743264 1176.5447428154528 2 589.2803955078125 MULTI HCD FTMS 0 0 0 5195 15062.203125 0.723915642264853 -2 0.050090789794921875 6 Oxidation (M) _LM(Oxidation (M))WIYHPCV_ ENST00000239893.9_1_13:37578680-37580262:+|nuORF;EXOSC8|p.G77Dfs*42|1|0.06|ENSG00000120699|chr13:37004549-37004549|A/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85108.7 NaN 3243 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5202 33.046 NaN 32695 35 0 9893.2 0.261 -1 YLHCGFKCV 9 21 563.7618306050799 1125.5091082769598 2 564.2628173828125 MULTI HCD FTMS 0 0 0 5195 4010.611572265625 0.16438284021011268 11 -0.26369476318359375 7 Carbamidomethyl (C) _YLHC(Carbamidomethyl (C))GFKCV_ ENSG00000168703|ENST00000372785|WFDC12 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109319.4 NaN 3244 1956 5195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5204 33.052 NaN 898400 35 0 195000 0.327 + 3905 EPQPGEARL 9 51 498.7591539901953 995.5037550471906 2 498.7591552734375 MULTI HCD FTMS 0 0 0 5203 472774.3125 0.7809285055630552 3 -0.0634307861328125 1 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 36.506200033944 0.08138327636155518 1 [EP]QP{[DA]|[EG]}A[R{I|L}] 9 0 + 34.371 0 0 3.4526 3.4526 83.108 0 0 0 10.954387282529801 4.629070689390964 4.629070689390964 8.51937464544563 0 0.6505149978319906 0 0.7742275032520141 0 + + [EP]QP{[DA]|[EG]}A[R{I|L}];[QP]ER{I|L}Q[EP];[EP][AG]P{[DA]|[EG]}A[R{I|L}];{[DA]|[EG]}PAR{I|L}Q[EP];[QP]ER{I|L}[AG][EP];{[DA]|[EG]}PAR{I|L}[AG][EP];{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}[TA]Q[HA] 3.4526;2.5968;2.5276;2.2161;1.6664;1.2911;0.93995 +;-;-;-;-;-;- + 285 + NaN NaN 216822.7 NaN 3245 1957 5203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5205 33.056 NaN 204220 35 0 28863 0.261 + 4138 ETISSKNIISR 11 44 416.5697030081511 1246.6872796246535 3 416.5697937011719 MULTI HCD FTMS 0 0 0 5203 47596.42578125 0.4182087763166006 -4 0.10676956176757812 2 Unmodified _ETISSKNIISR_ ENSG00000179119|ENST00000336349|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1 6.305088519099855 0.39126869013174315 1 KN{I|L}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 6 5 20.891 0 0 1.6757 0 0 517.2375532333323 0 517.2375532333323 0 1.4401626154040734 0 0 0 0 0 0 0 + KN{I|L}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 1.6757 + + 58 + NaN NaN 125431.2 NaN 3246 1957 5203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5206 33.06 NaN 133160 35 0 9839.4 0.261 -1 YSSFLFWRMP 10 44 450.5489644012382 1348.6250638039146 3 450.54864501953125 MULTI HCD FTMS 0 0 0 5203 18028.51171875 0.8937930818119179 -5 0.13345718383789062 3 Oxidation (M) _YSSFLFWRM(Oxidation (M))P_ ENSG00000213190|ENST00000368921|MLLT11 1.5922808571145555 0.4668755089467872 1 [HA]E{M(Oxidation (M))|F} 4 -1 26.242 0 0 1.9458 0 0 0 861.4230885294991 861.4230885294991 15.762699783909502 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0 [HA]E{M(Oxidation (M))|F} 1.9458 - 13 + NaN NaN 106026 NaN 3247 1957 5203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5207 33.063 NaN 27570 35 0 4670.4 0.261 + 138 AEESDLSRQY 10 23 599.2730211123685 1196.531489291537 2 599.2725830078125 MULTI HCD FTMS 0 0 0 5203 13770.3193359375 0.6645873813107798 -2 0.053401947021484375 4 Unmodified _AEESDLSRQY_ ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 8.97624648632007 0.42715123575657504 1 QY 2 8 20.969 0 0 1.7525 0 0 887.4015980451187 0 887.4015980451187 0 3.4779555595761025 0 0 0 0 0 0 0 + QY 1.7525 + + 8 NaN NaN 90218 NaN 3248 1957 5203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5209 33.068 NaN 1086700 35 0 117270 0.327 + 3792 EPEEESERHIL 11 49 456.55259995686276 1366.6359704707884 3 456.5528259277344 MULTI HCD FTMS 0 0 0 5208 342896.46875 0.8835943740819955 1 -0.02664947509765625 1 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 21.2413784809298 0.27200558463088126 1 SEEE[HA] 6 7 43.659 0 0 3.1946 0 0 666.3805563232154 0 666.3805563232154 0 18.96591250700361 0 0 0 0.25 0 1.274227503252014 0 SEEE[HA] 3.1946 - 129 NaN NaN 243586.9 NaN 3249 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5210 33.073 NaN 212400 35 0 34552 0.261 + 15350 LPDDPAKTTM 10 49 552.7659068832946 1103.5172608333892 2 552.7660522460938 MULTI HCD FTMS 0 0 0 5208 106007.4921875 0.7993101135861452 -2 0.04337310791015625 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 49.74193281347159 0.07872806610313077 1 [{I|L}P]DD[PA]KTT{M(Oxidation (M))|F} 10 0 + 62.925 0 0 5.7022 5.7022 85.521 0 0 0 5.764837301042718 41.95554701812867 5.764837301042718 6.497972112521921 0 2.6307196863200843 0 0.3252574989159953 0 + + [{I|L}P]DD[PA]KTT{M(Oxidation (M))|F};{I|L}PDD[Q{I|L}][VG]T{M(Oxidation (M))|F};[DP]{I|L}D[PA]KTT{M(Oxidation (M))|F};[DP]D{I|L}[PA]KTT{M(Oxidation (M))|F};{I|L}PDD[VG][Q{I|L}]T{M(Oxidation (M))|F} 5.7022;5.1133;5.0895;4.9092;4.803 +;-;-;-;- + 269 NaN NaN 122330.1 NaN 3250 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5211 33.076 NaN 37663 35 0 6130.2 0.262 + 7264 FTAVKENV 8 19 454.24787095856954 906.4811889839391 2 454.2477111816406 MULTI HCD FTMS 0 0 0 5208 23545.302734375 0.6920265366500625 3 -0.080047607421875 3 Unmodified _FTAVKENV_ tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 7.289230182591677 0.5311777711368266 1 A{[ET]|[MV]} 3 6 15.458 0 0 1.7052 0 0 587.3280323476193 0 587.3280323476193 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[ET]|[MV]} 1.7052 - 4 NaN NaN 83486 NaN 3251 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5212 33.08 NaN 26681 35 0 3122.3 0.261 + 139 AEESDLSRQY 10 21 599.2730211123685 1196.531489291537 2 599.7752685546875 MULTI HCD FTMS 0 0 0 5208 12255.744140625 0.7400076796419438 -2 0.04337310791015625 4 Unmodified _AEESDLSRQY_ ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 10.150570793230772 0.4161670024087991 1 QY 2 8 20.969 0 0 1.7525 0 0 887.3968983380875 0 887.3968983380875 0 10.726825097560422 0 0 0 0 0 0 0 + QY 1.7525 + + 7 NaN NaN 80499.8 NaN 3252 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5213 33.083 NaN 52726 35 0 8668.9 0.262 -1 ETAMSFVAR 9 26 514.2476374865657 1026.4807220399314 2 514.2476806640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _ETAM(Oxidation (M))SFVAR_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 3.5964929083625545 0.32375295897743744 1 V{[QV]|[N{I|L}]|[RA]|[KV]} 3 -1 10.458 0 0 1.0188 0 0 682.2641520709846 0 682.2641520709846 0 3.4678748622465623 0 0 0 0 0 0 0 V{[QV]|[N{I|L}]|[RA]|[KV]} 1.0188 + + 10 + NaN NaN 86461.8 NaN 3253 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5214 33.086 NaN 22954 35 0 6491.2 0.261 + 33014 YCAHPSMTTT 10 14 556.2326403128249 NaN 0 556.232421875 PEAK HCD FTMS 0 0 0 5208 3527.80224609375 0.332103566808632 4 -0.09674453735351562 6 Unmodified _YCAHPSMTTT_ REV__ENSG00000074047|ENST00000361492|GLI2;REV__nc|ENSG00000074047|P10070-1|GLI2;REV__nc|ENSG00000074047|P10070-2|GLI2;REV__nc|ENSG00000074047|P10070|GLI2 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93268.5 NaN 3254 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5215 33.09 NaN 13549 35 0 3962.9 0.261 + 8883 HNYYISRIY 9 12 614.808740718909 NaN 0 614.807861328125 PEAK HCD FTMS 0 0 0 5208 2431.712158203125 0.287145204481732 -3 0.07010269165039062 7 Unmodified _HNYYISRIY_ ENSG00000120594|ENST00000377252|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96611 NaN 3255 1958 5208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5217 33.095 NaN 214160 35 0 46680 0.327 + 15673 LPEKTQESL 9 38 522.7822402433331 1043.5499275534662 2 522.7821655273438 MULTI HCD FTMS 0 0 0 5216 110373.890625 0.89478404314463 2 -0.05339813232421875 1 Unmodified _LPEKTQESL_ ENSG00000076554|ENST00000518937|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327|TPD52 29.84058131909904 0.11198220037953927 1 {I|L}PEYV 5 6 64.341 0 0 6.1656 0 0 0 439.21772180728755 439.21772180728755 48.883578386120234 0 0 0 0 0.805462187404089 1.5228787452803376 0.7614393726401688 0 {I|L}PEYV 6.1656 - 39 + NaN NaN 107614.2 NaN 3256 1959 5216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5218 33.1 NaN 296260 35 0 71249 0.261 -1 SSGPVDPMM 9 37 476.6910442976 951.367535662 2 476.6910095214844 MULTI HCD FTMS 0 0 0 5216 125906.0625 0.5969095771758268 -17 0.41010284423828125 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DD 4 -1 19.425 0 0 2.0418 0 0 0 424.18388029179454 424.18388029179454 3.226825097560422 0 0 0 0 0.9247425010840047 0 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DD 2.0418 - 17 NaN NaN 128484 NaN 3257 1959 5216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5219 33.103 NaN 93008 35 0 29347 0.261 + -1 WWPCMWCPE 9 26 627.2332007465116 1252.451848559823 2 627.2335205078125 MULTI HCD FTMS 0 0 0 5216 58528.5546875 0.6889132187770786 -2 0.0433502197265625 3 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 2.302733041254933 0.33356062215410776 1 PE 2 -1 17.959 0 0 1.4339 0 0 1008.3613148419937 0 1008.3613148419937 0 8.494850021680094 0 0 0 0 0 0 0 PE 1.4339 + + 5 NaN NaN 96971.5 NaN 3258 1959 5216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5220 33.106 NaN 57729 35 0 7517.4 0.264 + -1 QYVKRVCEF 9 29 410.2094143185746 1227.6064135559238 3 410.5438232421875 MULTI HCD FTMS 0 0 0 5216 13183.7919921875 0.6073978414935032 -5 0.12011337280273438 4 Carbamidomethyl (C) _QYVKRVC(Carbamidomethyl (C))EF_ REV__ENSG00000114120|ENST00000324194|SLC25A36;REV__ENST00000514629.1_1_3:140692546-140695292:+|nuORF;REV__nc|ENSG00000114120|Q96CQ1-3|SLC25A36;REV__nc|ENSG00000114120|Q96CQ1-4|SLC25A36 2.9952420565917617 0.3283108881486655 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2614 0 0 1062.527584675844 0 1062.527584675844 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2614 + + 6 + NaN NaN 90203.9 NaN 3259 1959 5216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5221 33.11 NaN 37539 35 0 4763.4 0.261 + 34771 YQLSTRHFS 9 25 569.7856976036538 1137.5568422741076 2 570.2932739257812 MULTI HCD FTMS 0 0 0 5216 1839.6651611328125 0.12935445483271624 -3 0.0700225830078125 5 Unmodified _YQLSTRHFS_ REV__ENSG00000139220|ENST00000549396|PPFIA2;REV__ENSG00000143847|ENST00000295706|PPFIA4;REV__ENST00000486360.1_1_1:203032958-203044890:+|nuORF;REV__nc|ENSG00000139220|O75334-2|PPFIA2;REV__nc|ENSG00000139220|O75334-3|PPFIA2;REV__nc|ENSG00000139220|O75334-4|PPFIA2;REV__nc|ENSG00000139220|O75334-5|PPFIA2;REV__nc|ENSG00000139220|O75334-6|PPFIA2;REV__nc|ENSG00000139220|O75334-7|PPFIA2;REV__nc|ENSG00000139220|O75334-8|PPFIA2;REV__nc|ENSG00000143847|O75335-1|PPFIA4;REV__nc|ENSG00000143847|O75335-2|PPFIA4;REV__nc|ENSG00000143847|O75335|PPFIA4 6.2057823575117 0.30397260197431997 1 N 1 -1 3.9794 0 0 0.34982 0 0 207.08133065477006 813.4224337213499 1020.50376437612 0 0 0 0 0 0 0 0 0 N 0.34982 - 1 + NaN NaN 93546.9 NaN 3260 1959 5216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5223 33.115 NaN 305820 35 0 92064 0.327 -1 HVCPCVTM 8 43 481.69936735576766 NaN 0 481.7159423828125 PEAK HCD FTMS 0 0 0 5222 3840.805419921875 1 0 0 1 Carbamidomethyl (C),Oxidation (M) _HVC(Carbamidomethyl (C))PCVTM(Oxidation (M))_ ENST00000481804.5_1_16:772680-773505:-|nuORF;ENST00000482878.5_1_16:772872-773550:-|nuORF 9.347437153973935 0.38822285293237185 1 TV[KC]VT 6 -1 26.471 0 0 2.7534 0 0 165.01352635253585 162.02315698795158 327.03668334048746 0 0 0 0 0 0 0 0.4247425010840047 0.3807196863200844 TV[KC]VT 2.7534 - 54 + NaN NaN 123605.8 NaN 3261 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5224 33.12 NaN 137720 35 0 27789 0.261 + 26445 STMSTNGIPR 10 36 532.2636850780813 1062.5128172229624 2 532.2636108398438 MULTI HCD FTMS 0 0 0 5222 80959.0234375 0.9696873599017545 2 -0.050014495849609375 2 Unmodified _STMSTNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 32.037481411007896 0.2145045983280644 1 {[MG]|[TS]}MSTNG{I|L}PR 10 0 + 59.857 0 0 5.6335 5.6335 86.594 0 0 0 56.75759390300961 18.279550148593486 18.279550148593486 9.164539485499255 0 0.5 0 0 0.3252574989159953 + + {[MG]|[TS]}MSTNG{I|L}PR;{[MG]|[TS]}MSTGGG{I|L}PR;[WD]{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}PR 5.6335;4.771;0.78541 +;-;- + 94 + NaN NaN 116757.9 NaN 3262 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5225 33.123 NaN 66764 35 0 10867 0.261 + 22200 QLNSVESTGRA 11 28 581.2968183791822 1160.5790838251644 2 581.2967529296875 MULTI HCD FTMS 0 0 0 5222 54731.61328125 0.7240779219920155 4 -0.10005950927734375 3 Unmodified _QLNSVESTGRA_ REV__nc|ENSG00000149150|O75387-2|SLC43A1 9.5439744041441 0.373925449867384 1 [NS]{I|L}WAVSG 8 -1 48.621 0 0 4.1893 0 0 0 343.17353235416255 343.17353235416255 39.156687756324686 0 0 0 0 1.3494850021680094 0 0 0 [NS]{I|L}WAVSG 4.1893 - 39 + NaN NaN 106745.1 NaN 3263 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5226 33.127 NaN 167200 35 0 31583 0.261 -1 SADPSGAFRM 10 32 527.7347515506884 1053.4549501681768 2 527.7346801757812 MULTI HCD FTMS 0 0 0 5222 71149.46875 0.5937848249393575 -5 0.11683273315429688 4 Oxidation (M) _SADPSGAFRM(Oxidation (M))_ ENSG00000196878|ENST00000356082|LAMB3 34.221707139014875 0.19555013683537745 1 {[SA]|[TG]}DPSGA{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 10 -1 + 62 0 0 5.8854 5.8854 84.572 0 0 0 44.041068762089 8.819459175083608 8.819459175083608 3.521825181113627 0 1.9604093769761874 0 0 0 {[SA]|[TG]}DPSGA{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{[SA]|[TG]}DPSQ{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 5.8854;5.5511 +;- + 154 + NaN NaN 99392.9 NaN 3264 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5227 33.13 NaN 111820 35 0 23205 0.262 + 1954 DAIKQYMHFR 10 35 436.8894402245558 1307.6464912738675 3 436.8895568847656 MULTI HCD FTMS 0 0 0 5222 34729.54296875 0.8362959089638806 -1 0.02008056640625 5 Unmodified _DAIKQYMHFR_ ENSG00000198515|ENST00000514170|CNGA1 8.444304893310646 0.4306066564229251 1 {[DA]|[EG]}{I|L} 3 7 38.314 0 0 2.93 0 0 0 1005.4760560534174 1005.4760560534174 31.324543621168388 0 0 0 0 1 1.6989700043360187 0.3252574989159953 0 + {[DA]|[EG]}{I|L} 2.93 + + 11 NaN NaN 117825.2 NaN 3265 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5228 33.133 NaN 79220 35 0 9367.6 0.261 + 28705 TSPSPWTSL 9 37 488.24207900998795 NaN 0 488.2417297363281 PEAK HCD FTMS 0 0 0 5222 27366.6875 0.5578432554435301 -5 0.11683273315429688 6 Unmodified _TSPSPWTSL_ REV__ENST00000409245.5_1_2:47256450-47273455:+|nuORF;REV__ENST00000461601.5_1_2:47256450-47277092:+|nuORF 10.823927491677226 0.2427956001690155 1 S 1 -1 15.044 0 0 1.5438 0 0 131.0958831449355 753.3175449355516 884.4134280804872 0 0 0 0 0 0.4247425010840047 0 0.3807196863200844 0 S 1.5438 + + 3 + NaN NaN 108401.4 NaN 3266 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5229 33.136 NaN 61808 35 0 16960 0.261 + -1 LPCCMPWLS 9 20 561.7437919350468 1121.4730309368936 2 561.7435913085938 MULTI HCD FTMS 0 0 0 5222 29220.533203125 0.8685865244005667 -2 0.04673004150390625 7 Carbamidomethyl (C),Oxidation (M) _LPCC(Carbamidomethyl (C))M(Oxidation (M))PWLS_ REV__ENST00000322224.8_1_4:679628-680066:-|nuORF 7.910154910731844 0.2910521888787154 1 {I|L}P 2 -1 19.464 0 0 1.7356 0 0 0 908.3125094049436 908.3125094049436 12.474250108400469 0 0 0 0 0 0 0 0 {I|L}P 1.7356 + + 3 + NaN NaN 87952.7 NaN 3267 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5230 33.14 NaN 20929 35 0 6230.5 0.261 + 4140 ETISSKNIISR 11 14 624.3517137638831 1246.6888745945662 2 624.351318359375 MULTI HCD FTMS 0 0 0 5222 15246.216796875 0.8847275897454031 1 -0.03331756591796875 8 Unmodified _ETISSKNIISR_ ENSG00000179119|ENST00000336349|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1 0.8449412413469082 0.4152150412513042 1 S 1 10 6.9897 0 0 0.56066 0 0 343.1760094596037 813.4553927057249 1156.6314021653286 0 0 0 0 0 0 0 0 0 + S 0.56066 + + 2 + NaN NaN 90427.3 NaN 3268 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5231 33.143 NaN 28834 35 0 4878 0.261 + 18074 MMLEHFKNQ 9 19 589.2796478743264 1176.5447428154528 2 589.79736328125 MULTI HCD FTMS 0 0 0 5222 6322.654296875 0.5897614272915956 -3 0.0634307861328125 9 Unmodified _MMLEHFKNQ_ DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;ENST00000463038.1_1_3:132241830-132242644:+|nuORF 1.6526216038709556 0.33848895094777925 1 Q{[QN]|[E{I|L}]|[KN]} 3 7 10.458 0 0 0.88884 0 0 788.3483143537125 0 788.3483143537125 0 10.45757490560675 0 0 0 0 0 0 0 Q{[QN]|[E{I|L}]|[KN]} 0.88884 - 1 NaN NaN 85552.6 NaN 3269 1960 5222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5233 33.149 NaN 200720 35 0 69199 0.327 + 23910 RTDPDDLP 8 16 464.72203057081686 927.4295082084337 2 464.7218933105469 MULTI HCD FTMS 0 0 0 5232 54567.8828125 0.8441227436914727 -1 0.03331756591796875 1 Unmodified _RTDPDDLP_ REV__ENSG00000134326|ENST00000256722|CMPK2;REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2;REV__nc|ENSG00000134326|Q5EBM0-3|CMPK2;REV__nc|ENSG00000134326|Q5EBM0-4|CMPK2 9.347437153973935 0.5250182646323369 1 P{I|L} 2 -1 25.969 0 0 2.8001 0 0 699.2820135965153 0 699.2820135965153 0 25.969100130080562 0 0 0 0.5 0 0 0 P{I|L} 2.8001 - 3 NaN NaN 105580.2 NaN 3270 1961 5232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5234 33.153 NaN 113830 35 0 16755 0.261 + 25504 SFHNIHNTF 9 32 558.7645148250888 1115.5144767169775 2 558.7647094726562 MULTI HCD FTMS 0 0 0 5232 50257.171875 0.8375086267873122 -1 0.03331756591796875 2 Unmodified _SFHNIHNTF_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 45.739877483867886 0.03899552410870734 1 HQS{M(Oxidation (M))|F} 4 7 37.423 0 0 3.3548 0 0 598.285578370455 0 598.285578370455 0 23.470325397914564 0 0 0 0.4247425010840047 0 0.4247425010840047 0 HQS{M(Oxidation (M))|F} 3.3548 - 34 NaN NaN 122652.7 NaN 3271 1961 5232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5235 33.157 NaN 39565 35 0 5529 0.261 -1 RFDHVITNM 9 28 574.7796432045966 1147.544733475993 2 574.7791137695312 MULTI HCD FTMS 0 0 0 5232 13956.41796875 0.498641967847973 5 -0.11685562133789062 3 Oxidation (M) _RFDHVITNM(Oxidation (M))_ ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB 5.731851221503515 0.3075653528928475 1 {I|L}AS 3 -1 14.693 0 0 1.2804 0 0 342.1522296691556 531.2138155572874 873.366045226443 0 0 0 0 0 0 0 0 0 {I|L}AS 1.2804 - 8 + NaN NaN 100532.7 NaN 3272 1961 5232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5236 33.16 NaN 30121 35 0 9897.3 0.261 -1 SKESCPMAW 9 22 556.2326403128249 NaN 0 556.2330322265625 PEAK HCD FTMS 0 0 0 5232 6594.251953125 0.6207758942532865 7 -0.1735687255859375 4 Carbamidomethyl (C),Oxidation (M) _SKESC(Carbamidomethyl (C))PM(Oxidation (M))AW_ ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95965.7 NaN 3273 1961 5232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5238 33.165 NaN 235660 35 0 21181 0.327 + 21838 QATREYTL 8 43 491.25322804702677 980.4919031608536 2 491.2535095214844 MULTI HCD FTMS 0 0 0 5237 152474.421875 0.8642228673295436 4 -0.10015869140625 1 Unmodified _QATREYTL_ ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 47.748688679222035 0.14170315093675012 1 YT{I|L} 3 5 22.524 0 0 2.2972 0 0 585.283983299025 0 585.283983299025 0 9.564856298445576 0 0 0 0.7742275032520141 0 0 0 + YT{I|L} 2.2972 + + 25 NaN NaN 126327.4 NaN 3274 1962 5237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5239 33.17 NaN 64734 35 0 5908.5 0.261 + 21765 QAFSDRTI 8 33 469.24044678090826 936.4663406286165 2 469.2400817871094 MULTI HCD FTMS 0 0 0 5237 39736.546875 0.08937587350213098 11 -0.2896156311035156 2 Unmodified _QAFSDRTI_ REV__ENST00000526402.1_1_11:43543828-43544716:+|nuORF 7.289230182591677 0.5311777711368266 1 T 1 -1 6.9897 0 0 0.74639 0 0 148.1200102024016 684.2769259088499 832.3969361112515 0 0 0 0 0 0 0 0 0 T 0.74639 + + 5 + NaN NaN 102701.1 NaN 3275 1962 5237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5240 33.173 NaN 53824 35 0 6594.9 0.261 + 24411 RYKLTFLWP 9 37 408.5690228530164 1222.6852391592492 3 408.5688781738281 MULTI HCD FTMS 0 0 0 5237 19065.3046875 0.9592205514215454 6 -0.15687179565429688 3 Unmodified _RYKLTFLWP_ ENST00000371370.7_1_1:54433608-54433665:+|nuORF 1.1933415558491238 0.3419706357095994 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90705.8 NaN 3276 1962 5237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5241 33.177 NaN 30032 35 0 4742.7 0.261 + 24977 RYVDKVSNL 9 20 547.3036567746536 1092.5927606161072 2 547.3038330078125 MULTI HCD FTMS 0 0 0 5237 21429.7265625 0.5523673165478817 3 -0.070098876953125 4 Unmodified _RYVDKVSNL_ ENSG00000239382|ENST00000378875|ALKBH6;ENST00000392183.7_1_19:36501753-36505114:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;nc|ENSG00000239382|Q3KRA9-2|ALKBH6 3.2813086475875832 0.32614229037259 1 D 1 8 4.6041 0 0 0.42139 0 0 559.3322758522385 415.2116793268188 974.5439551790573 0 0 0 0 0 0 0 0 0 + D 0.42139 + + 1 + NaN NaN 83154.3 NaN 3277 1962 5237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5242 33.18 NaN 47902 35 0 3950.1 0.262 + 28366 TPDVKIPN 8 36 442.248061776019 882.481570618838 2 442.2477111816406 MULTI HCD FTMS 0 0 0 5237 21850.1953125 0.11888347279459698 10 -0.2529640197753906 5 Unmodified _TPDVKIPN_ REV__ENSG00000173193|ENST00000474629|PARP14;REV__nc|ENSG00000173193|Q460N5-1|PARP14;REV__nc|ENSG00000173193|Q460N5-3|PARP14;REV__nc|ENSG00000173193|Q460N5-4|PARP14;REV__PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;REV__PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 3.944395688203298 0.5361403129012058 1 TPV 3 -1 23.188 0 0 2.6275 0 0 0 582.2874382893615 582.2874382893615 6.197887582883936 0 0 0 0 0 0 0 0 TPV 2.6275 - 4 + NaN NaN 94816.5 NaN 3278 1962 5237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5243 33.183 NaN 66873 35 0 7837.4 0.261 + 117 ADYNSREHG 9 41 524.7255400470598 1047.4365271609195 2 524.7247924804688 MULTI HCD FTMS 0 0 0 5237 19699.66015625 1 0 0 6 Unmodified _ADYNSREHG_ ENST00000465267.5_1_3:186501384-186502902:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000491473.5_1_3:186501384-186502287:+|nuORF;nc|ENSG00000156976|Q14240-2|EIF4A2 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91589.8 NaN 3279 1962 5237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5245 33.189 NaN 265650 35 0 54425 0.326 + 3906 EPQPGEARL 9 45 498.7591539901953 995.5037550471906 2 498.7591247558594 MULTI HCD FTMS 0 0 0 5244 130155.5703125 0.2149909424591417 9 -0.22957611083984375 1 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 20.41453444215458 0.18397929046831515 1 [EP]QP{[DA]|[EG]}A[R{I|L}] 9 0 + 26.673 0 0 2.6793 2.6793 84.38 0 0 0 3.242946587693968 5.642492736872601 3.242946587693968 9.208187539523752 0 0.2742275032520141 0 0.3807196863200844 0 + + [EP]QP{[DA]|[EG]}A[R{I|L}];[EP][AG]P{[DA]|[EG]}A[R{I|L}] 2.6793;1.7544 +;- + 160 + NaN NaN 120008.2 NaN 3280 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5246 33.193 NaN 238450 35 0 28448 0.261 + 4139 ETISSKNIISR 11 57 416.5697030081511 1246.6872796246535 3 416.56988525390625 MULTI HCD FTMS 0 0 0 5244 84585.5234375 0.7432156442476255 2 -0.046710968017578125 2 Unmodified _ETISSKNIISR_ ENSG00000179119|ENST00000336349|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1 4.603747607663779 0.39873019341487226 1 {I|L}{I|L}N 3 9 16.198 0 0 1.2993 0 0 279.15452269593715 624.2985933893186 903.4531160852557 0 0 0 0 0 0 0 0 0 {I|L}{I|L}N 1.2993 - 20 + NaN NaN 131440.1 NaN 3281 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5247 33.197 NaN 78566 35 0 14470 0.261 + 1799 CNNDQKNYSSF 11 38 440.51576526052565 1318.525466381777 3 440.5159606933594 MULTI HCD FTMS 0 0 0 5244 31963.1953125 1 0 0 3 Unmodified _CNNDQKNYSSF_ REV__ENSG00000197106|ENST00000331565|SLC6A17 0.5059551277355931 0.4167017191902429 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1744 0 0 1153.4464696550176 0 1153.4464696550176 0 14.3753063169585 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1744 + + 4 + NaN NaN 108310.8 NaN 3282 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5248 33.2 NaN 77378 35 0 12402 0.261 + 14461 LETLAQMDDL 10 25 574.7796432045966 1147.544733475993 2 575.2918701171875 MULTI HCD FTMS 0 0 0 5244 5107.642578125 0.2903040956641099 6 -0.15017318725585938 4 Unmodified _LETLAQMDDL_ ENSG00000151655|ENST00000358415|ITIH2 6.723162845929126 0.4397169348982109 1 [DN]{I|L}{I|L}ASS 7 8 31.018 0 0 2.703 0 0 0 444.1844576471313 444.1844576471313 20.048954067622304 0 0 0 0 0 0 0.3807196863200844 0 [DN]{I|L}{I|L}ASS 2.703 - 30 + NaN NaN 97209.4 NaN 3283 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5249 33.203 NaN 14863 35 0 3305 0.261 + -1 MEFVQWNSF 9 15 602.2600966522812 1202.5056403713622 2 602.2612915039062 MULTI HCD FTMS 0 0 0 5244 2592.528076171875 0.11385123651571437 10 -0.26622772216796875 5 Oxidation (M) _M(Oxidation (M))EFVQWNSF_ REV__tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83817.3 NaN 3284 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5250 33.207 NaN 27215 35 0 5371.6 0.261 -1 PHLHGKCQR 9 24 566.7923262776459 1131.5700996220917 2 566.7927856445312 MULTI HCD FTMS 0 0 0 5244 8821.5439453125 0.23525268945458788 -6 0.13683319091796875 6 Carbamidomethyl (C) _PHLHGKC(Carbamidomethyl (C))QR_ ENST00000305943.7_2_1:228680974-228681783:+|nuORF 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.366 0 0 750.3924427716812 0 750.3924427716812 0 13.239087409443187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]} 1.366 - 6 NaN NaN 112574.6 NaN 3285 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5251 33.21 NaN 39448 35 0 7755.3 0.261 + 26099 SPIERNEQL 9 23 543.2831675889445 1084.5517822446889 2 543.2819213867188 MULTI HCD FTMS 0 0 0 5244 7465.97216796875 0.5971254131562993 -2 0.0400848388671875 7 Unmodified _SPIERNEQL_ ENSG00000167380|ENST00000337433|ZNF226;nc|ENSG00000167380|Q9NYT6-2|ZNF226 2.9952420565917617 0.3283108881486655 1 Q{I|L} 2 7 20.969 0 0 1.9334 0 0 825.3959828107437 0 825.3959828107437 0 20.969100130080562 0 0 0 0 0 0 0 + Q{I|L} 1.9334 + + 1 NaN NaN 117007.6 NaN 3286 1963 5244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5253 33.215 NaN 499380 35 0 49654 0.327 + 3793 EPEEESERHIL 11 48 456.55259995686276 1366.6359704707884 3 456.5527038574219 MULTI HCD FTMS 0 0 0 5252 150084.140625 0.3867450218388435 7 -0.17958450317382812 1 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 5.198440282359431 0.39612207336387734 1 EEE[HA] 5 7 30.713 0 0 2.2474 0 0 753.4124082711949 0 753.4124082711949 0 8.77513725768253 0 0 0 0 0 0.8494850021680094 0 EEE[HA] 2.2474 - 80 NaN NaN 156497.1 NaN 3287 1964 5252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5254 33.22 NaN 258500 35 0 34403 0.261 + 15351 LPDDPAKTTM 10 60 552.7659068832946 1103.5172608333892 2 552.7659912109375 MULTI HCD FTMS 0 0 0 5252 103227.171875 0.7783461411448437 4 -0.1068267822265625 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 68.75988807550267 0.019054759910196034 1 {I|L}PDDPAKTT{M(Oxidation (M))|F} 10 0 + 93.312 0 0 8.4559 8.4559 87.446 0 0 0 70.9163750790475 13.037275116073346 13.037275116073346 0.42674056792243675 0 2.798455006504028 1.2218487496163564 0.8494850021680094 0 + + {I|L}PDDPAKTT{M(Oxidation (M))|F};{I|L}PDD[KA]PTT{M(Oxidation (M))|F};{I|L}PDD{[QV]|[N{I|L}]|[RA]|[KV]}{[VA]|[{I|L}G]}T{M(Oxidation (M))|F};[{I|L}P]DDPAKTT{M(Oxidation (M))|F};[{I|L}P]DD[{I|L}A]{[NV]|[RG]}T{M(Oxidation (M))|F};[DP]{I|L}DPAKTT{M(Oxidation (M))|F};[DP]D{I|L}PAKTT{M(Oxidation (M))|F};[{I|L}P]DD[{I|L}A]Q[VS]{M(Oxidation (M))|F};[DP]{I|L}D[{I|L}A]{[NV]|[RG]}T{M(Oxidation (M))|F};[DP]D{I|L}[{I|L}A]{[NV]|[RG]}T{M(Oxidation (M))|F} 8.4559;8.4172;6.8181;5.9702;4.2913;4.2503;4.2296;3.2048;2.5714;2.5507 +;-;-;+;-;-;-;-;-;- + 789 + NaN NaN 122785.7 NaN 3288 1964 5252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5255 33.223 NaN 25054 35 0 4797 0.261 -1 LMWIYHPCV 9 16 589.2796478743264 1176.5447428154528 2 589.2796020507812 MULTI HCD FTMS 0 0 0 5252 13969.3173828125 0.6713896553682472 6 -0.15016937255859375 3 Oxidation (M) _LM(Oxidation (M))WIYHPCV_ ENST00000239893.9_1_13:37578680-37580262:+|nuORF;EXOSC8|p.G77Dfs*42|1|0.06|ENSG00000120699|chr13:37004549-37004549|A/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83642.7 NaN 3289 1964 5252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5256 33.227 NaN 13600 35 0 3247.9 0.261 + 16480 LSWEDSGLYQ 10 13 599.2730211123685 1196.531489291537 2 599.2728881835938 MULTI HCD FTMS 0 0 0 5252 11685.6396484375 0.5639759299284087 5 -0.12351608276367188 4 Unmodified _LSWEDSGLYQ_ ENSG00000162723|ENST00000368093|SLAMF9;nc|ENSG00000162723|Q96A28-2|SLAMF9 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102279.1 NaN 3290 1964 5252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5257 33.23 NaN 14049 35 0 3612.7 0.261 + -1 PHKFCYYR 8 10 585.7818493616037 NaN 0 585.7818603515625 PEAK HCD FTMS 0 0 0 5252 6894.45166015625 0.8114251940087166 2 -0.050113677978515625 5 Carbamidomethyl (C) _PHKFC(Carbamidomethyl (C))YYR_ REV__ENSG00000011405|ENST00000691414|PIK3C2A 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104855.5 NaN 3291 1964 5252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5259 33.235 NaN 344770 35 0 87070 0.327 -1 SSGPVDPMM 9 26 476.6910442976 951.367535662 2 476.6910705566406 MULTI HCD FTMS 0 0 0 5258 134551.890625 0.6378986884859246 -11 0.26030731201171875 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.20639379410187 0 427.20639379410187 0 15.445312593723983 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 6 NaN NaN 146443.1 NaN 3292 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5260 33.24 NaN 88086 35 0 27292 0.261 -1 CFWEECPPE 9 18 627.2332007465116 1252.451848559823 2 627.2333984375 MULTI HCD FTMS 0 0 0 5258 68073.0234375 0.8012568555401445 4 -0.10346221923828125 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 1.844237919475145 0.33703635659052655 1 P[EP] 3 -1 14.265 0 0 1.1389 0 0 911.3063221662125 0 911.3063221662125 0 7.275071725447406 0 0 0 0.3807196863200844 0 0 0 P[EP] 1.1389 + + 3 NaN NaN 101385.8 NaN 3293 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5261 33.243 NaN 116910 35 0 11786 0.262 -1 ETAMSFVAR 9 35 514.2476374865657 1026.4807220399314 2 514.2474365234375 MULTI HCD FTMS 0 0 0 5258 46107.234375 1 0 0 3 Oxidation (M) _ETAM(Oxidation (M))SFVAR_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 9.38312468134398 0.279288223203164 1 S{M(Oxidation (M))|F}VAR 5 -1 31.938 0 0 3.1114 0 0 448.1622293806575 0 448.1622293806575 0 23.354706403678875 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}VAR 3.1114 + + 19 + NaN NaN 95496.6 NaN 3294 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5262 33.247 NaN 119280 35 0 14870 0.261 + 15911 LPLSEGTQTV 10 41 522.7822402433331 1043.5499275534662 2 522.7822265625 MULTI HCD FTMS 0 0 0 5258 26862.501953125 0.21777014446524778 8 -0.21951675415039062 4 Unmodified _LPLSEGTQTV_ ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000107731|Q8IZJ1-2|UNC5B 4.189502756095605 0.45312800054222196 1 {I|L}P 2 8 17.959 0 0 1.7209 0 0 0 830.3907786972576 830.3907786972576 11.505149978319906 0 0 0 0 0 0 0 0 + {I|L}P 1.7209 + + 20 + NaN NaN 98702.7 NaN 3295 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5263 33.25 NaN 73901 35 0 19722 0.261 + -1 LNIIRCLC 8 25 531.282822845592 1060.551092757984 2 531.2828369140625 MULTI HCD FTMS 0 0 0 5258 40944.9921875 1 0 0 5 2 Carbamidomethyl (C) _LNIIRC(Carbamidomethyl (C))LC(Carbamidomethyl (C))_ REV__ENSG00000008869|ENST00000233099|HEATR5B;REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B 12.531546534597751 0.5015908124873912 1 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3 -1 39.705 0 0 3.7438 0 0 0 717.315931997134 717.315931997134 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3.7438 + + 5 + NaN NaN 92824.6 NaN 3296 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5264 33.253 NaN 25071 35 0 5337.7 0.261 + 23602 RPGIPMCAQL 10 19 543.2831675889445 1084.5517822446889 2 543.2833251953125 MULTI HCD FTMS 0 0 0 5258 12503.189453125 1 0 0 6 Unmodified _RPGIPMCAQL_ ENST00000265087.8_1_5:172755569-172756019:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99043.6 NaN 3297 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5265 33.257 NaN 36811 35 0 4452.1 0.263 -1 PPPFMNGGWKM 11 29 426.5324177333261 NaN 0 426.5325012207031 PEAK HCD FTMS 0 0 0 5258 7192.83203125 0.4557018350613346 15 -0.40624237060546875 7 Oxidation (M) _PPPFMNGGWKM(Oxidation (M))_ ENST00000558221.1_1_15:91383052-91384515:+|nuORF 1.214830529360525 0.33867401910978034 1 M 1 -1 3.0989 0 0 0.36413 0 0 257.79089640239596 459.1850985162719 716.9759949186679 0 0 0 0 0 0 0 0 0 M 0.36413 + + 1 + NaN NaN 105995.3 NaN 3298 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5266 33.26 NaN 38287 35 0 7955.4 0.261 -1 MIDYRHFV 8 24 548.7658145119809 1095.5170760907617 2 548.7656860351562 MULTI HCD FTMS 0 0 0 5258 23786.0390625 1 0 0 8 Oxidation (M) _M(Oxidation (M))IDYRHFV_ ENSG00000178171|ENST00000321420|AMER3 0.7936320650641473 0.540814922690045 1 E 1 -1 3.9794 0 0 0.36324 0 0 565.268310076893 398.1818026178344 963.4501126947275 0 0 0 0 0 0 0 0 0 E 0.36324 - 1 + NaN NaN 87431.8 NaN 3299 1965 5258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5268 33.265 NaN 209030 35 0 62318 0.327 + 18807 NADPQAVTM 9 31 481.71612515155437 961.4176973699088 2 481.7159118652344 MULTI HCD FTMS 0 0 0 5267 111429.5859375 0.07744809284318371 45 -1.1719245910644531 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 51.41523569358685 0.02959097413485123 1 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 65.181 0 0 6.7797 6.7797 94.602 0 0 0 7.147642715192504 65.18114684785509 7.147642715192504 65.18114684785509 0 2.305462187404089 0 0 0.3252574989159953 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 6.7797 + + 52 NaN NaN 118425.8 NaN 3300 1966 5267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5269 33.27 NaN 159050 35 0 17659 0.261 + 9207 HPLQTLPVL 9 43 509.3082111013043 1016.6018692694087 2 509.30804443359375 MULTI HCD FTMS 0 0 0 5267 75278.7734375 0.6507020398383753 -4 0.10015869140625 2 Unmodified _HPLQTLPVL_ REV__ENST00000321895.6_1_3:49201211-49201499:-|nuORF 22.736283301280096 0.1639198954644489 1 HPV 3 -1 31.198 0 0 3.0688 0 0 0 680.3998425886779 680.3998425886779 6.7609125905568135 0 0 0 0 0.5 0 0 0 HPV 3.0688 - 33 + NaN NaN 106392 NaN 3301 1966 5267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5270 33.273 NaN 117000 35 0 16048 0.261 + 15338 LPDAHSDYA 9 27 494.7218382278239 987.4291235224479 2 494.72216796875 MULTI HCD FTMS 0 0 0 5267 65249.64453125 0.5390333733953311 -3 0.07677078247070312 3 Unmodified _LPDAHSDYA_ ENSG00000239306|ENST00000310137|RBM14 25.399314129420986 0.14091189997036632 1 {I|L}PD 3 6 26.682 0 0 2.7022 0 0 0 659.2395723932249 659.2395723932249 3.7236374744834677 0 0 0 0 0 0 0.3494850021680094 0 + {I|L}PD 2.7022 + + 7 + NaN NaN 98177.3 NaN 3302 1966 5267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5271 33.277 NaN 51950 35 0 8515.2 0.261 -1 YSSFLFWRMP 10 23 450.5489644012382 1348.6250638039146 3 450.5486755371094 MULTI HCD FTMS 0 0 0 5267 4072.771240234375 0.20191432410575164 3 -0.07340240478515625 4 Oxidation (M) _YSSFLFWRM(Oxidation (M))P_ ENSG00000213190|ENST00000368921|MLLT11 1.7422754331352037 0.46608156381052757 1 E 1 -1 10.485 0 0 0.77743 0 0 1011.4976499633746 205.06122766666252 1216.5588776300372 0 0 0 0 0 0.5 0 0 0 E 0.77743 - 2 + NaN NaN 91384.5 NaN 3303 1966 5267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5272 33.28 NaN 24760 35 0 5449.6 0.261 + -1 FCSYWMEM 8 23 585.207839595247 1168.401126257294 2 585.708984375 MULTI HCD FTMS 0 0 0 5267 7282.61279296875 0.5773087428489546 -4 0.10015869140625 5 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))SYWM(Oxidation (M))EM_ REV__ENSG00000128581|ENST00000315322|IFT22;REV__ENST00000468833.1_1_7:100959585-100959801:-|nuORF;REV__nc|ENSG00000128581|Q9H7X7-2|IFT22;REV__nc|ENSG00000128581|Q9H7X7-3|IFT22 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90696.4 NaN 3304 1966 5267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5273 33.283 NaN 25614 35 0 4497.3 0.261 + 1805 CPMHHQDHKT 10 15 617.2659242834393 1232.5172956336785 2 617.2659301757812 MULTI HCD FTMS 0 0 0 5267 6687.53759765625 0.12615764834917528 -5 0.11685562133789062 6 Unmodified _CPMHHQDHKT_ ENSG00000158402|ENST00000323760|CDC25C;nc|ENSG00000158402|P30307-2|CDC25C;nc|ENSG00000158402|P30307-3|CDC25C;nc|ENSG00000158402|P30307-4|CDC25C 0.35063188157827746 0.47344775436540215 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90396.1 NaN 3305 1966 5267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5275 33.289 NaN 463310 35 0 57809 0.326 + 25154 SAIKEEQEL 9 65 523.7718140656035 1045.529075198007 2 523.7717895507812 MULTI HCD FTMS 0 0 0 5274 277529.65625 0.4252316714329341 -3 0.0735321044921875 1 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 100.7086487251713 0.004245359191255521 1 {[SA]|[TG]}{I|L}KEEQE{I|L} 9 0 + 67.463 0 0 6.4525 6.4525 88.74 0 0 0 2.1053190375958764 2.1053190375958764 2.1053190375958764 9.208187539523749 0 2.1549471895720984 0 0.3807196863200844 0.3054621874040891 + + {[SA]|[TG]}{I|L}KEEQE{I|L};{[SA]|[TG]}{I|L}KEE[AG]E{I|L};{I|L}{[SA]|[TG]}KEEQE{I|L};{[QN]|[E{I|L}]|[KN]}QEK{[SA]|[TG]}E{I|L};{[QN]|[E{I|L}]|[KN]}EQK{[SA]|[TG]}E{I|L};{[QN]|[E{I|L}]|[KN]}QEKE{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}[AG]EK{[SA]|[TG]}E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}EK{[SA]|[TG]}E{I|L};{[QN]|[E{I|L}]|[KN]}QEEK{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}EQKE{[SA]|[TG]}{I|L} 6.4525;5.5718;5.2214;3.0816;2.8694;2.2611;2.2009;2.1689;2.0927;2.0489 +;-;-;-;-;-;-;-;-;- + 458 NaN NaN 154666.2 NaN 3306 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5276 33.293 NaN 158420 35 0 13239 0.261 + 721 AQQPTNLPCM 10 52 551.7544266485155 1101.494300363831 2 551.7545776367188 MULTI HCD FTMS 0 0 0 5274 90841.2734375 0.9578825013211609 1 -0.033294677734375 2 Unmodified _AQQPTNLPCM_ REV__ENSG00000154237|ENST00000388948|LRRK1;REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF;REV__ENST00000525395.2_1_15:101598200-101605355:+|nuORF 24.020572477871973 0.2864316864133941 1 MA{M(Oxidation (M))|F}QVE 6 -1 67.785 0 0 6.1539 0 0 0 393.1892423467857 393.1892423467857 44.59691590396389 0 0 0 0 1.8494850021680094 0 0.6109243748081782 0.805462187404089 MA{M(Oxidation (M))|F}QVE 6.1539 - 153 + NaN NaN 113104.2 NaN 3307 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5277 33.297 NaN 134130 35 0 21616 0.261 -1 SADPSGAFRM 10 43 527.7347515506884 1053.4549501681768 2 527.7346801757812 MULTI HCD FTMS 0 0 0 5274 45851.32421875 0.3826566944601142 2 -0.049983978271484375 3 Oxidation (M) _SADPSGAFRM(Oxidation (M))_ ENSG00000196878|ENST00000356082|LAMB3 27.223235318498237 0.2564750587861972 1 {[SA]|[TG]}DPSGA 7 -1 42.211 0 0 4.0069 0 0 0 465.1925142877563 465.1925142877563 25.75720713938118 0 0 0 0 1.3494850021680094 0 0 0 {[SA]|[TG]}DPSGA 4.0069 + + 74 + NaN NaN 102146 NaN 3308 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5278 33.3 NaN 56209 35 0 5094.7 0.261 + 25505 SFHNIHNTF 9 30 558.7645148250888 1115.5144767169775 2 558.7647094726562 MULTI HCD FTMS 0 0 0 5274 42724.8671875 0.7119868371597147 5 -0.12938690185546875 4 Unmodified _SFHNIHNTF_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 26.020703789607367 0.13554323117744113 1 HQS{M(Oxidation (M))|F} 4 7 33.175 0 0 2.974 0 0 598.2848377912125 0 598.2848377912125 0 17.71775040875461 0 0 0 0.4247425010840047 0 0 0 HQS{M(Oxidation (M))|F} 2.974 - 21 NaN NaN 103960.8 NaN 3309 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5279 33.303 NaN 184040 35 0 78005 0.262 + 20524 PDSDERPL 8 25 464.72203057081686 927.4295082084337 2 464.7216491699219 MULTI HCD FTMS 0 0 0 5274 25308.86328125 0.39150844803872914 5 -0.12938690185546875 5 Unmodified _PDSDERPL_ REV__ENST00000568506.1_1_16:30194950-30195564:-|nuORF 11.640296217721598 0.50814828952472 1 ATRP{I|L} 5 -1 28.456 0 0 3.0682 0 0 371.09663574925247 0 371.09663574925247 0 15.26802492411967 0 0 0 0.9247425010840047 0 0 0 ATRP{I|L} 3.0682 - 26 + NaN NaN 117952 NaN 3310 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5280 33.307 NaN 135090 35 0 24215 0.261 + 4304 EVQDLHLAQR 10 41 403.55102385812586 1207.6312421745777 3 403.5506286621094 MULTI HCD FTMS 0 0 0 5274 16513.630859375 0.6261725211412439 -2 0.053478240966796875 6 Unmodified _EVQDLHLAQR_ ENSG00000125505|ENST00000245615|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;nc|ENSG00000125505|Q96N66-2|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7 4.897010918128616 0.4493830473644964 1 D{I|L} 2 8 15.217 0 0 1.26 0 0 356.1706316529473 620.326648012151 976.4972796650984 0 0 0 0 0 0.4247425010840047 0 0 0 + D{I|L} 1.26 + + 8 + NaN NaN 101058.9 NaN 3311 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5281 33.31 NaN 36677 35 0 5244.3 0.261 + -1 VMKPCRRW 8 19 546.2850135159035 1090.555474098607 2 546.7844848632812 MULTI HCD FTMS 0 0 0 5274 8869.513671875 0.2934188866588154 -9 0.2203216552734375 7 Oxidation (M) _VM(Oxidation (M))KPCRRW_ REV__ENSG00000177398|ENST00000408910|UMODL1;REV__nc|ENSG00000177398|Q5DID0-2|UMODL1;REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant 0.7936320650641473 0.540814922690045 1 D 1 -1 6.9897 0 0 0.64093 0 0 182.22461579958195 790.2880953424436 972.5127111420256 0 0 0 0 0 0 0 0 0 D 0.64093 - 5 + NaN NaN 103034.7 NaN 3312 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5282 33.313 NaN 95621 35 0 17557 0.261 + 26584 SVSNVVITK 9 34 473.7821420047175 945.549731076235 2 473.7816467285156 MULTI HCD FTMS 0 0 0 5274 17483.0234375 0.2979692319655426 -3 0.0735321044921875 8 Unmodified _SVSNVVITK_ ENSG00000085832|ENST00000371733|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;nc|ENSG00000085832|P42566-2|EPS15 14.405379775768559 0.2358970535022398 1 {I|L}[KT] 3 6 11.963 0 0 1.2652 0 0 585.3134772693976 0 585.3134772693976 0 7.3586311141647816 0 0 0 0.5 0 0 0 + {I|L}[KT] 1.2652 + + 13 + NaN NaN 101032.4 NaN 3313 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5283 33.317 NaN 15871 35 0 2967.1 0.261 -1 QDLLFRFMN 9 17 600.2986450195312 NaN 0 600.2986450195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _QDLLFRFM(Oxidation (M))N_ ENSG00000135317|ENST00000314673|SNX14;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;SNX14|p.G528Wfs*4|1|0.29|ENSG00000135317|chr6:85536818-85536819|-/A|frameshift_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87961.3 NaN 3314 1967 5274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5285 33.322 NaN 172860 35 0 22609 0.326 + 23595 RPFEDEAL 8 44 488.7421416037401 NaN 0 488.7326354980469 PEAK HCD FTMS 0 0 0 5284 6734.30224609375 0.3513699141763598 4 -0.09609222412109375 1 Unmodified _RPFEDEAL_ REV__ENST00000493592.1_1_7:72954140-72971423:-|nuORF 16.942295170755138 0.3865212393897457 1 AEE 3 -1 14.055 0 0 1.4408 0 0 131.1137565529752 512.2110079400999 643.324764493075 0 0 0 0 0 0 0 0.3252574989159953 0 AEE 1.4408 - 13 + NaN NaN 127291.2 NaN 3315 1968 5284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5286 33.327 NaN 45115 35 0 5380 0.261 + -1 DAIMDREPM 9 26 547.2362722402784 1092.4579915473566 2 547.2362060546875 MULTI HCD FTMS 0 0 0 5284 22294.138671875 1 0 0 2 Oxidation (M) _DAIM(Oxidation (M))DREPM_ REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 3.944395688203298 0.32111559684428237 1 [{I|L}A]D 3 -1 15.458 0 0 1.4149 0 0 0 790.2892436958385 790.2892436958385 15.45757490560675 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.4149 - 9 + NaN NaN 93288.4 NaN 3316 1968 5284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5287 33.33 NaN 56771 35 0 6718 0.261 + 30968 VRSDQYTL 8 28 491.25322804702677 980.4919031608536 2 491.2532043457031 MULTI HCD FTMS 0 0 0 5284 19882.544921875 0.1126939834950023 10 -0.26613616943359375 3 Unmodified _VRSDQYTL_ REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF 7.289230182591677 0.5311777711368266 1 T 1 -1 5.4846 0 0 0.55937 0 0 148.1217992563598 728.2975557916624 876.4193550480222 0 0 0 0 0 0 0 0 0 T 0.55937 + + 2 + NaN NaN 93928.3 NaN 3317 1968 5284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5288 33.333 NaN 14175 35 0 4136.1 0.261 -1 CPCVCMCVCM 10 12 619.1871839807794 1236.3598150283588 2 619.18701171875 MULTI HCD FTMS 0 0 0 5284 9310.3291015625 0.7752946192530471 -3 0.08677291870117188 4 2 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))PC(Carbamidomethyl (C))VCM(Oxidation (M))CVCM(Oxidation (M))_ ENST00000481476.1_1_9:132501610-132501871:-|nuORF 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98035.6 NaN 3318 1968 5284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5290 33.339 NaN 96493 35 0 10734 0.327 + 28377 TPEGHAVGL 9 41 440.72988600948406 879.4452190857681 2 440.7298889160156 MULTI HCD FTMS 0 0 0 5289 52256.1875 0.6820791364889015 -1 0.016689300537109375 1 Unmodified _TPEGHAVGL_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 57.47134341890925 0.0211188941628804 1 TPE[HQ]VG{I|L} 8 2 + 58.592 0 0 6.6624 6.6624 94.25 0 0 0 37.623337350737245 9.731975075880328 9.731975075880328 58.59243748081781 0 1.6989700043360187 1.3010299956639813 0.4247425010840047 0.3252574989159953 TPE[HQ]VG{I|L} 6.6624 - 44 + NaN NaN 95484.8 NaN 3319 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5291 33.343 NaN 74095 35 0 10078 0.261 + 22457 QQRAEQLLA 9 34 528.7933032878823 1055.5720536425645 2 528.793212890625 MULTI HCD FTMS 0 0 0 5289 35587.890625 0.8664184464914214 1 -0.026653289794921875 2 Unmodified _QQRAEQLLA_ REV__ENSG00000112984|ENST00000394894|KIF20A;REV__nc|ENSG00000112984|O95235-2|KIF20A 7.289230182591677 0.29575926068275815 1 {I|L} 1 -1 6.9897 0 0 0.66217 0 0 107.05883444464389 832.4055582946564 939.4643927393004 0 0 0 0 0 0 0 0 0 {I|L} 0.66217 + + 12 + NaN NaN 109860.3 NaN 3320 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5292 33.347 NaN 58152 35 0 6493.2 0.261 + 9359 HPSLFPPSPPG 11 29 566.7923262776459 1131.5700996220917 2 566.79296875 MULTI HCD FTMS 0 0 0 5289 37498.1640625 1 0 0 3 Unmodified _HPSLFPPSPPG_ ENST00000476304.5_1_7:100218482-100231271:-|nuORF 8.745405648335112 0.3805662881914433 1 HP{M(Oxidation (M))|F} 3 8 31.198 0 0 2.757 0 0 0 747.3673189752561 747.3673189752561 31.197887582883936 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.757 - 5 + NaN NaN 89377.2 NaN 3321 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5293 33.35 NaN 38212 35 0 5537.9 0.261 + 4134 ETILASSGTDR 11 22 575.2915850322827 1148.5686171313653 2 575.2910766601562 MULTI HCD FTMS 0 0 0 5289 16702.359375 0.4004858126830005 5 -0.13941574096679688 4 Unmodified _ETILASSGTDR_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4 3.5870582119611467 0.4031890477297048 1 {I|L}A 2 9 10.969 0 0 0.95502 0 0 343.17196293390276 618.248436852523 961.4203997864258 0 0 0 0 0 0 0 0 0 + {I|L}A 0.95502 + + 11 + NaN NaN 90815.3 NaN 3322 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5294 33.353 NaN 39775 35 0 7005.5 0.261 -1 LGWWSCQW 8 18 561.7437919350468 1121.4730309368936 2 561.7439575195312 MULTI HCD FTMS 0 0 0 5289 10689.9150390625 0.31775998354895335 7 -0.19608306884765625 5 Carbamidomethyl (C) _LGWWSC(Carbamidomethyl (C))QW_ ENST00000602367.1_1_6:52531372-52531654:+|nuORF 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94763.9 NaN 3323 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5295 33.357 NaN 17253 35 0 4568.5 0.261 -1 CRHLHYPLL 9 18 604.8223524240749 1207.6301519149497 2 604.8214111328125 MULTI HCD FTMS 0 0 0 5289 5963.572265625 0.6901415295205771 -1 0.016689300537109375 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))RHLHYPLL_ OR2T34|p.P134H|2|0.19|ENSG00000183310|chr1:248574357-248574357|G/T|missense_variant 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76528.8 NaN 3324 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5296 33.36 NaN 18950 35 0 3913.4 0.261 -1 VCVRDSTGEL 10 14 589.2796478743264 1176.5447428154528 2 589.797119140625 MULTI HCD FTMS 0 0 0 5289 5570.97021484375 0.5196462104418885 6 -0.16941452026367188 7 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))VC(Carbamidomethyl (C))VRDSTGEL_ ENST00000489606.5_1_3:52280576-52282310:+|nuORF 2.735195868890462 0.4608258780945842 1 E{I|L} 2 -1 20.969 0 0 1.7823 0 0 916.4186268537125 0 916.4186268537125 0 20.969100130080562 0 0 0 0 0 0 0 E{I|L} 1.7823 + + 1 NaN NaN 90317.1 NaN 3325 1969 5289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5298 33.365 NaN 163940 35 0 24178 0.327 -1 PDVSKHLCM 9 49 551.7544266485155 1101.494300363831 2 552.7658081054688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _PDVSKHLC(Carbamidomethyl (C))M(Oxidation (M))_ ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant 3.944395688203298 0.32111559684428237 1 [DP][WK]HDDP 8 -1 18.862 0 0 1.7124 0 0 0 108.03940747945117 108.03940747945117 11.68243764792422 0 0 0 0 0 0 0.4247425010840047 0 [DP][WK]HDDP 1.7124 - 57 NaN NaN 116388.2 NaN 3326 1970 5297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5299 33.37 NaN 132370 35 0 15063 0.262 + 3794 EPEEESERHIL 11 26 456.55259995686276 1366.6359704707884 3 456.5526123046875 MULTI HCD FTMS 0 0 0 5297 48195.3046875 0.12419229697606102 13 -0.35947418212890625 2 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 3.133959531975271 0.40517618462012517 1 EEE[HA] 5 7 26.466 0 0 1.9366 0 0 753.4128205135231 0 753.4128205135231 0 10.268024924119668 0 0 0 0 0 0.4247425010840047 0 EEE[HA] 1.9366 - 25 NaN NaN 104012.1 NaN 3327 1970 5297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5300 33.379 NaN 68692 35 0 12163 0.261 + 3907 EPQPGEARL 9 24 498.7591539901953 995.5037550471906 2 498.75885009765625 MULTI HCD FTMS 0 0 0 5297 29402.46484375 0.048566984971925596 16 -0.4560127258300781 3 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 3.5964929083625545 0.32375295897743744 1 M{M(Oxidation (M))|F} 2 9 6.4537 0 0 0.64828 0 0 157.2040857130093 557.1662691705686 714.3703548835779 0 0 0 0 0 0 0 0 0 M{M(Oxidation (M))|F} 0.64828 - 8 + NaN NaN 91998 NaN 3328 1970 5297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5301 33.383 NaN 128580 35 0 31940 0.261 + 32519 WGPFCPVL 8 30 459.7299250859369 917.4452972386738 2 459.7297668457031 MULTI HCD FTMS 0 0 0 5297 47979.79296875 0.6424606962608292 -2 0.04334259033203125 4 Unmodified _WGPFCPVL_ REV__ENST00000545022.5_1_12:121970787-121972525:-|nuORF 11.114462752807354 0.5120171699125776 1 V{I|L} 2 -1 28.271 0 0 3.0815 0 0 687.2831298376054 0 687.2831298376054 0 21.281446971601312 0 0 0 0.7302046884880937 0 0 0 V{I|L} 3.0815 + + 10 NaN NaN 105319.7 NaN 3329 1970 5297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5302 33.386 NaN 73229 35 0 6879.8 0.261 + 9235 HPLSDHEATL 10 34 560.2728999410213 NaN 0 560.2742309570312 PEAK HCD FTMS 0 0 0 5297 22900.068359375 0.3310174396839624 -50 1.1301155090332031 5 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 19.256988751693697 0.2866536677172102 1 TA 2 9 14.776 0 0 1.321 0 0 149.10124403749268 794.3253267877561 943.4265708252487 0 0 0 0 0 0 0 0.3807196863200844 0 TA 1.321 - 11 + NaN NaN 95649.2 NaN 3330 1970 5297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5303 33.389 NaN 21830 35 0 3418 0.261 + -1 ELQMERNEL 9 27 589.2796478743264 1176.5447428154528 2 589.2798461914062 MULTI HCD FTMS 0 0 0 5297 7860.2919921875 0.37777928492208507 12 -0.3394584655761719 6 Oxidation (M) _ELQM(Oxidation (M))ERNEL_ REV__ENSG00000102763|ENST00000379310|VWA8;REV__nc|ENSG00000102763|A3KMH1-2|VWA8;REV__nc|ENSG00000102763|A3KMH1-3|VWA8 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82657.5 NaN 3331 1970 5297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5305 33.395 NaN 381870 35 0 102820 0.327 -1 SSGPVDPMM 9 26 476.6910442976 951.367535662 2 476.6910095214844 MULTI HCD FTMS 0 0 0 5304 175478.90625 0.831930072731518 -5 0.1294708251953125 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.206312654797 0 427.206312654797 0 22.43501263708417 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 3 NaN NaN 144613.5 NaN 3332 1971 5304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5306 33.399 NaN 53195 35 0 17938 0.261 -1 CFWEECPPE 9 19 627.2332007465116 1252.451848559823 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5304 42936.82421875 0.5053899918516536 10 -0.2800788879394531 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 1.844237919475145 0.33703635659052655 1 PE 2 -1 20.969 0 0 1.6742 0 0 1008.3614369123062 0 1008.3614369123062 0 20.969100130080562 0 0 0 0 0 0 0 PE 1.6742 + + 1 NaN NaN 94987.5 NaN 3333 1971 5304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5307 33.403 NaN 53219 35 0 6503.2 0.261 + 20324 NYQNVVHKL 9 31 557.803764318411 1113.592975703622 2 557.8037719726562 MULTI HCD FTMS 0 0 0 5304 29980.501953125 0.6687459924297167 2 -0.059986114501953125 3 Unmodified _NYQNVVHKL_ ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4 43.85829265575387 0.04763305254408404 1 [YN]Q{[NV]|[RG]}VH[K{I|L}] 9 0 + 57.738 0 0 5.1848 5.1848 86.562 0 0 0 57.73773107713893 5.6424927368725974 5.6424927368725974 9.208187539523749 0 1.3807196863200843 2 0 0.3807196863200844 + + [YN]Q{[NV]|[RG]}VH[K{I|L}];[YN][AG]{[NV]|[RG]}VH[K{I|L}] 5.1848;4.3579 +;- + 30 + NaN NaN 97296.6 NaN 3334 1971 5304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5308 33.406 NaN 14536 35 0 5786.6 0.261 + -1 LLPYHLHRC 9 11 604.8223524240749 1207.6301519149497 2 604.8233642578125 MULTI HCD FTMS 0 0 0 5304 7191.66259765625 0.8322637513007896 1 -0.023334503173828125 4 Carbamidomethyl (C) _LLPYHLHRC(Carbamidomethyl (C))_ REV__OR2T34|p.P134H|2|0.19|ENSG00000183310|chr1:248574357-248574357|G/T|missense_variant 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82527.3 NaN 3335 1971 5304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5309 33.409 NaN 31439 35 0 6050.9 0.261 -1 LPQHPDVEM 9 14 541.2526160524714 1080.4906791717426 2 541.2525024414062 MULTI HCD FTMS 0 0 0 5304 14661.7109375 0.06656445710763145 -6 0.1595306396484375 5 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 3.2813086475875832 0.32614229037259 1 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9407 0 0 786.4053822248062 0 786.4053822248062 0 20.969100130080562 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.9407 + + 1 NaN NaN 99046.5 NaN 3336 1971 5304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5310 33.413 NaN 13674 35 0 4569 0.261 -1 RASSSFCSCC 10 13 582.7165055447969 NaN 0 582.7162475585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _RASSSFC(Carbamidomethyl (C))SC(Carbamidomethyl (C))C_ ENST00000577847.1_1_17:18087769-18087952:-|nuORF 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93438.5 NaN 3337 1971 5304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5312 33.418 NaN 197100 35 0 18596 0.327 + 9420 HPVEKPVVL 9 58 509.3082111013043 1016.6018692694087 2 509.30810546875 MULTI HCD FTMS 0 0 0 5311 89292.15625 0.7718322916310725 2 -0.0600128173828125 1 Unmodified _HPVEKPVVL_ ENSG00000125149|ENST00000219139|PHAF1 32.78568957990786 0.09846250359632436 1 [VP]VKEHPV{I|L} 9 4 + 53.761 0 0 5.2883 5.2883 90.368 0 0 0 19.990823894397565 27.078884368865914 19.990823894397565 26.0256843593644 0 0.3807196863200844 1.5228787452803376 1.4247425010840047 0 [VP]VKEHPV{I|L};[VP]VKE[VP]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK[QA]PV{I|L} 5.2883;2.7283;2.3463 -;-;- 120 NaN NaN 114256.4 NaN 3338 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5313 33.423 NaN 109610 35 0 15552 0.261 + 15339 LPDAHSDYA 9 31 494.7218382278239 987.4291235224479 2 494.7220764160156 MULTI HCD FTMS 0 0 0 5311 57269.80078125 0.4731111430654773 3 -0.0900115966796875 2 Unmodified _LPDAHSDYA_ ENSG00000239306|ENST00000310137|RBM14 25.399314129420986 0.14091189997036632 1 SDYA 4 5 32.167 0 0 3.2577 0 0 533.2593250959 0 533.2593250959 0 11.197887582883936 0 0 0 0.5 0 0 0 + SDYA 3.2577 + + 20 NaN NaN 113951.9 NaN 3339 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5314 33.426 NaN 190340 35 0 53297 0.261 -1 NADPQAVTM 9 29 481.71612515155437 961.4176973699088 2 481.71588134765625 MULTI HCD FTMS 0 0 0 5311 79162.265625 0.05502099326870498 51 -1.3281898498535156 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 TCRAVT{M(Oxidation (M))|F} 7 -1 60.209 0 0 6.2625 0 0 165.04614455390782 0 165.04614455390782 0 60.20889497925907 0 0 0 1 0 0.4247425010840047 0 TCRAVT{M(Oxidation (M))|F} 6.2625 - 58 NaN NaN 109890.2 NaN 3340 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5315 33.43 NaN 110480 35 0 13215 0.261 + 19 AAGVGDMVM 9 49 441.68809129984214 881.3616296664843 2 441.68853759765625 MULTI HCD FTMS 0 0 0 5311 58688.890625 0.5540635824524728 -15 0.3664093017578125 4 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 85.35673624503755 0.00464763827098139 1 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 70.641 0 0 8.015 8.015 90.349 0 0 0 3.979400086720375 65.57950361376122 3.979400086720375 8.535312760830394 0 2.6549471895720984 0 0.6747425010840047 0 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.015;7.0466 -;+ + 100 NaN NaN 98489.4 NaN 3341 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5316 33.433 NaN 84785 35 0 11104 0.261 + -1 PHSCDTNVMTI 11 30 617.2659242834393 1232.5172956336785 2 617.265380859375 MULTI HCD FTMS 0 0 0 5311 48757.71484375 0.9197942521807944 1 -0.036651611328125 5 Oxidation (M) _PHSCDTNVM(Oxidation (M))TI_ REV__ENST00000466375.2_2_22:44579501-44579708:+|nuORF 10.150570793230772 0.3686401556411756 1 T{I|L} 2 -1 27.206 0 0 2.2074 0 0 1000.3759416800087 0 1000.3759416800087 0 21.721675119240516 0 0 0 0.4247425010840047 0 0.5 0 T{I|L} 2.2074 + + 10 NaN NaN 96550.4 NaN 3342 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5317 33.436 NaN 93741 35 0 14324 0.262 + 16367 LSDKIKEVT 9 37 516.8009939466302 1031.5874349600604 2 516.8012084960938 MULTI HCD FTMS 0 0 0 5311 51351.21875 0.8465584778382567 -1 0.023334503173828125 6 Unmodified _LSDKIKEVT_ ENST00000290573.6_1_2:75119227-75119419:+|nuORF 5.731851221503515 0.3075653528928475 1 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.4157 0 0 866.5417176522463 0 866.5417176522463 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4157 - 6 + NaN NaN 97981.1 NaN 3343 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5318 33.439 NaN 76572 35 0 11025 0.261 + 18568 MVLQYDER 8 35 527.2549264269156 1052.4952999206312 2 527.2513427734375 MULTI HCD FTMS 0 0 0 5311 38607.51953125 0.10491515900314684 -10 0.2529640197753906 7 Unmodified _MVLQYDER_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 12.531546534597751 0.5015908124873912 1 {[ET]|[MV]}{I|L} 3 -1 18.952 0 0 1.8007 0 0 0 706.279424026353 706.279424026353 7.269987279362628 0 0 0 0 1 0 0 0 {[ET]|[MV]}{I|L} 1.8007 + + 17 NaN NaN 106907.6 NaN 3344 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5319 33.443 NaN 28278 35 0 5652 0.261 -1 MSSMEHTEEG 10 18 585.207839595247 1168.401126257294 2 585.208740234375 MULTI HCD FTMS 0 0 0 5311 19316.091796875 0.8047623666485423 2 -0.0600128173828125 8 2 Oxidation (M) _M(Oxidation (M))SSM(Oxidation (M))EHTEEG_ ENSG00000141376|ENST00000407086|BCAS3;ENST00000585812.5_1_17:59431721-59456358:+|nuORF;ENST00000587294.5_1_17:59445549-59469483:+|nuORF;ENST00000592702.5_1_17:59431721-59469483:+|nuORF;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101638.9 NaN 3345 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5320 33.446 NaN 71464 35 0 10210 0.261 -1 LPQHPDVEM 9 26 541.2526160524714 1080.4906791717426 2 541.2529296875 MULTI HCD FTMS 0 0 0 5311 22966.59765625 0.10426880676576442 -5 0.12938690185546875 9 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 15.248480904072842 0.22861284681709862 1 VE{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.8874 0 0 687.335252830275 0 687.335252830275 0 17.998037644757048 0 0 0 0.5 0 0 0 VE{M(Oxidation (M))|F} 2.8874 + + 16 NaN NaN 99731.3 NaN 3346 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5321 33.449 NaN 22110 35 0 4437.1 0.261 -1 YSMTHKEPE 9 16 569.247705661554 1136.480858389908 2 569.24755859375 MULTI HCD FTMS 0 0 0 5311 10734.1943359375 0.7946271973976967 10 -0.2867088317871094 10 Oxidation (M) _YSM(Oxidation (M))THKEPE_ ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL 2.9952420565917617 0.3283108881486655 1 EPE 3 -1 26.198 0 0 2.3052 0 0 763.318162986525 0 763.318162986525 0 19.20818753952375 0 0 0 0 0 0 0 EPE 2.3052 + + 3 NaN NaN 85566.2 NaN 3347 1972 5311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5323 33.455 NaN 588930 35 0 72799 0.326 + 25155 SAIKEEQEL 9 77 523.7718140656035 1045.529075198007 2 523.7716674804688 MULTI HCD FTMS 0 0 0 5322 380055.8125 0.5823225185044592 3 -0.08002853393554688 1 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 91.08480475639789 0.0044975408722150376 1 {[SA]|[TG]}{I|L}KEEQE{I|L} 9 0 + 67.66 0 0 6.4714 6.4714 88.777 0 0 0 4.762036441594191 42.523656471886326 4.762036441594191 9.208187539523749 0 2.1549471895720984 0 0.3252574989159953 0.3807196863200844 + + {[SA]|[TG]}{I|L}KEEQE{I|L};{[SA]|[TG]}{I|L}KEE[AG]E{I|L};[K{I|L}]{[SA]|[TG]}EEQE{I|L};[K{I|L}]{[SA]|[TG]}EE[AG]E{I|L};{[SA]|[TG]}{I|L}KEDD[VG]{I|L};{[QN]|[E{I|L}]|[KN]}QE[SG]{I|L}{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}QE[SG]{[SA]|[TG]}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}EQ[SG]{I|L}{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}QE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}EQ[SG]{[SA]|[TG]}{I|L}{I|L} 6.4714;5.5907;4.1534;3.2727;2.0191;1.4519;1.3324;1.3324;1.2835;1.2129 +;-;-;-;-;-;-;-;-;- + 471 NaN NaN 173707.5 NaN 3348 1973 5322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5324 33.459 NaN 138040 35 0 24789 0.261 + 2969 EAAAIIAQR 9 34 471.77209018820156 941.5296274432031 2 471.7717590332031 MULTI HCD FTMS 0 0 0 5322 57273.18359375 0.8784927461414332 1 -0.0233612060546875 2 Unmodified _EAAAIIAQR_ ENSG00000113758|ENST00000393565|DBN1;ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643-2|DBN1;nc|ENSG00000113758|Q16643|DBN1 43.85829265575387 0.04763305254408404 1 [RD]A{I|L}{I|L}A 6 5 32.254 0 0 3.4257 0 0 0 299.1472262018188 299.1472262018188 16.056518697048713 0 0 0 0 1.0114393726401687 0 0 0 [RD]A{I|L}{I|L}A 3.4257 - 25 + NaN NaN 104734.2 NaN 3349 1973 5322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5325 33.463 NaN 152800 35 0 19798 0.261 + 28329 TNHHFLML 8 40 506.7557523873342 NaN 0 506.7420349121094 PEAK HCD FTMS 0 0 0 5322 2199.66650390625 0.9244974376275953 -1 0.036651611328125 3 Unmodified _TNHHFLML_ REV__ENST00000369144.7_1_10:120795412-120795463:-|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98887.9 NaN 3350 1973 5322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5326 33.466 NaN 302720 35 0 97455 0.262 + 836 AWAPKPYHKF 10 50 415.5573742995963 1243.650293498989 3 415.5571594238281 MULTI HCD FTMS 0 0 0 5322 28862.296875 0.6749267708251788 -4 0.11605453491210938 4 Unmodified _AWAPKPYHKF_ CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|5|fusion;ENSG00000071054|ENST00000324219|MAP4K4;ENSG00000141503|ENST00000355280|MINK1;ENSG00000154310|ENST00000436636|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant 9.5439744041441 0.42184090036563754 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AN 4 7 41.242 0 0 3.3162 0 0 0 798.4370004424125 798.4370004424125 38.47799965699611 0 0 0 0 0.805462187404089 1.6989700043360187 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AN 3.3162 - 16 + NaN NaN 125362.2 NaN 3351 1973 5322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5327 33.469 NaN 169550 35 0 22518 0.261 + 637 APIQSEPRV 9 44 498.7773288919901 995.5401048507803 2 498.7770690917969 MULTI HCD FTMS 0 0 0 5322 59615.15234375 0.362846532407757 -6 0.16603851318359375 5 Unmodified _APIQSEPRV_ BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 36.506200033944 0.08138327636155518 1 AP{I|L}Q 4 5 44.438 0 0 4.4637 0 0 0 583.2837586283603 583.2837586283603 34.07181490493329 0 0 0 0 1.25 0 0 0 + AP{I|L}Q 4.4637 + + 162 + NaN NaN 107522.4 NaN 3352 1973 5322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5328 33.473 NaN 35267 35 0 8395.4 0.261 -1 MIDYRHFV 8 23 548.7658145119809 1095.5170760907617 2 548.7655639648438 MULTI HCD FTMS 0 0 0 5322 18572.169921875 0.7808012873885778 8 -0.2200927734375 6 Oxidation (M) _M(Oxidation (M))IDYRHFV_ ENSG00000178171|ENST00000321420|AMER3 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99019 NaN 3353 1973 5322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5330 33.478 NaN 238260 35 0 39747 0.327 + 2501 DSGDVAALR 9 45 452.22993209631016 902.4453112594204 2 452.2297668457031 MULTI HCD FTMS 0 0 0 5329 119624.9921875 0.9209518114579597 -1 0.0233612060546875 1 Unmodified _DSGDVAALR_ ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 99.75527289724121 0.004270341300239591 1 {[DS]|[MA]|[CV]|TT}GDVAA{I|L}R 9 0 + 80.754 0 0 8.9484 8.9484 96.423 0 0 0 2.160677999045717 2.160677999045717 2.160677999045717 24.719712763997563 0 3.242992819099939 0 1.848136244196333 0 + + {[DS]|[MA]|[CV]|TT}GDVAA{I|L}R;{[DS]|[MA]|[CV]|TT}[RD]AA{I|L}[VG];{[DS]|[MA]|[CV]|TT}GD[Q{I|L}]{I|L}R;{[DS]|[MA]|[CV]|TT}GDV[RV][VG];{[DS]|[MA]|[CV]|TT}[QP]{[MG]|[TS]}{I|L}R 8.9484;6.2092;5.3056;3.9032;3.4321 +;-;-;-;- + 109 NaN NaN 122233 NaN 3354 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5331 33.483 NaN 49543 35 0 6123 0.261 + 10777 ISPAHEGAV 9 30 440.72988600948406 879.4452190857681 2 440.7298583984375 MULTI HCD FTMS 0 0 0 5329 45192.56640625 0.589880512620488 4 -0.1100311279296875 2 Unmodified _ISPAHEGAV_ REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF 11.640296217721598 0.25978676193971967 1 G{I|L} 2 -1 25.969 0 0 2.9529 0 0 691.3283985316831 0 691.3283985316831 0 15.511525224473813 0 0 0 0.5 0 0 0 G{I|L} 2.9529 - 9 NaN NaN 79139.9 NaN 3355 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5332 33.486 NaN 93795 35 0 16147 0.261 + 27905 TEEREEAL 8 26 488.7328888758289 975.4512248184578 2 488.73272705078125 MULTI HCD FTMS 0 0 0 5329 24190.341796875 0.32528850993447406 5 -0.14003753662109375 3 Unmodified _TEEREEAL_ REV__ENSG00000128191|ENST00000351989|DGCR8;REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF;REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF;REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 9.38312468134398 0.524755689532147 1 EA{I|L} 3 -1 30.005 0 0 3.076 0 0 644.2777577130875 0 644.2777577130875 0 30.00508444608478 0 0 0 0.3807196863200844 0 0 0 EA{I|L} 3.076 + + 4 NaN NaN 98144.3 NaN 3356 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5333 33.49 NaN 102860 35 0 12757 0.261 + 32377 VYVSRPSHF 9 29 546.2850135159035 1090.555474098607 2 546.2852172851562 MULTI HCD FTMS 0 0 0 5329 36460.484375 0.6244716445271077 -1 0.0233612060546875 4 Unmodified _VYVSRPSHF_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 28.494509381512117 0.11816142465008336 1 VYV[DV]{[NV]|[RG]}H{M(Oxidation (M))|F} 9 4 + 49.103 0 0 4.5025 4.5025 90.205 0 0 0 23.133637307377057 1.667724800373449 1.667724800373449 49.10273743745762 0 1.1989700043360187 2 0 0 VYV[DV]{[NV]|[RG]}H{M(Oxidation (M))|F} 4.5025 - 34 + NaN NaN 103815.5 NaN 3357 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5334 33.493 NaN 106180 35 0 16142 0.263 -1 KYMEDYHQF 9 44 426.1815767851745 1275.5229009557236 3 426.181640625 MULTI HCD FTMS 0 0 0 5329 31440.263671875 0.5193443273491603 -6 0.15610504150390625 5 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 12.872603262515298 0.2491399024913319 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.606 0 0 1110.4440262992766 0 1110.4440262992766 0 17.26276531614463 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.606 + + 12 + NaN NaN 121625.9 NaN 3358 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5335 33.496 NaN 81904 35 0 9531.5 0.261 + 181 AERRSLDFSK 10 39 403.55102385812586 1207.6312421745777 3 403.88555908203125 MULTI HCD FTMS 0 0 0 5329 2563.959228515625 0.10362840528895594 5 -0.14003753662109375 6 Unmodified _AERRSLDFSK_ REV__ENSG00000187535|ENST00000426508|IFT140;REV__ENST00000439987.6_1_16:1604037-1657279:-|nuORF;REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF 2.9952420565917617 0.4594494122822477 1 V 1 -1 1.1092 0 0 0.091853 0 0 982.9600365855136 122.57843958072499 1105.5384761662385 0 0 0 0 0 0 0 0 0 V 0.091853 - 10 + NaN NaN 103292.8 NaN 3359 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5336 33.499 NaN 137080 35 0 13729 0.261 + -1 DEMCIRSR 8 36 513.2271191395284 NaN 0 513.24169921875 PEAK HCD FTMS 0 0 0 5329 1477.14306640625 0.23068851682956326 -2 0.0600128173828125 7 Oxidation (M) _DEM(Oxidation (M))CIRSR_ REV__ENSG00000102359|ENST00000373004|SRPX2 4.75600775471527 0.38822285293237185 1 VSHTVV{I|L} 7 -1 46.586 0 0 4.5475 0 0 114.89983780757605 171.0884951227172 285.98833293029327 0 0 0 0 0 0 0 0.8494850021680094 0 VSHTVV{I|L} 4.5475 - 46 + NaN NaN 114362.9 NaN 3360 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5337 33.503 NaN 21003 35 0 3698.7 0.261 + -1 HIKMRFSKGC 10 19 632.3258182942559 1262.6370836553117 2 632.3253784179688 MULTI HCD FTMS 0 0 0 5329 10908.7919921875 0.8965982634704008 1 -0.029998779296875 8 Carbamidomethyl (C) _HIKMRFSKGC(Carbamidomethyl (C))_ REV__ENSG00000263002|ENST00000426739|ZNF234 1.1933415558491238 0.46898715808974617 1 H[EP]D 4 -1 16.198 0 0 1.2829 0 0 0 781.4270113580686 781.4270113580686 16.197887582883936 0 0 0 0 0 0 0 0 H[EP]D 1.2829 - 2 + NaN NaN 85859 NaN 3361 1974 5329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5339 33.508 NaN 104210 35 0 16745 0.327 -1 LPDDPAKTTM 10 40 552.7659068832946 1103.5172608333892 2 552.765869140625 MULTI HCD FTMS 0 0 0 5338 43372.33984375 0.3270330159842477 15 -0.4132881164550781 1 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 11.517880264261096 0.4033776509493788 1 {I|L}PDD 4 -1 36.938 0 0 3.3473 0 0 0 660.3028169707377 660.3028169707377 23.750612633917 0 0 0 0 0.5 0 0 0 {I|L}PDD 3.3473 + + 13 + NaN NaN 106327.8 NaN 3362 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5340 33.513 NaN 176570 35 0 17215 0.261 + 2160 DHSVRVLIS 9 50 513.2905760202501 1024.5665991073001 2 513.2902221679688 MULTI HCD FTMS 0 0 0 5338 67076.8125 0.30087172507369503 -4 0.11334609985351562 2 Unmodified _DHSVRVLIS_ ENSG00000115307|ENST00000377526|AUP1;ENST00000463900.5_1_2:74756150-74756756:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1 24.020572477871973 0.15282392193088168 1 DVSHTVV{I|L}R 9 5 + 116.74 0 0 11.394 11.394 99.787 0 0 0 100.53904087461092 14.09256854528806 14.09256854528806 80.31479737718874 0 1.3851518780601921 2 1.7302046884880937 0 DVSHTVV{I|L}R;[DV]SHTVV[R{I|L}];[DV]SH[RV]S{I|L}{I|L};[VS]DHTVV[R{I|L}];[HS][DV]TVV[R{I|L}];[VS]DH[RV]S{I|L}{I|L};[HS][DV][RV]S{I|L}{I|L} 11.394;3.5549;2.4413;1.8743;1.2699;0.76074;0.15631 -;-;-;-;-;-;- 162 + NaN NaN 104812.4 NaN 3363 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5341 33.516 NaN 76122 35 0 6612.1 0.261 + 3795 EPEEESERHIL 11 29 456.55259995686276 1366.6359704707884 3 456.5525207519531 MULTI HCD FTMS 0 0 0 5338 17324.802734375 0.044643499199564514 18 -0.4932899475097656 3 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 1.9275035174196113 0.4104672908605315 1 E[HA] 3 9 10.458 0 0 0.76521 0 0 1011.4983891366729 0 1011.4983891366729 0 -1.1092437480817807 -1.1092437480817807 0 0 0 0 0 0 E[HA] 0.76521 - 10 NaN NaN 105723.6 NaN 3364 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5342 33.52 NaN 38496 35 0 6810.8 0.261 -1 NEMQPNGKVF 10 26 590.2768553523314 1178.5391577714627 2 590.276611328125 MULTI HCD FTMS 0 0 0 5338 23032.169921875 0.8212790673784784 -2 0.0533599853515625 4 Oxidation (M) _NEM(Oxidation (M))QPNGKVF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 5.296884461304476 0.4472664531305844 1 V{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.1396 0 0 914.39067275215 0 914.39067275215 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.1396 + + 5 NaN NaN 105101.9 NaN 3365 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5343 33.523 NaN 30398 35 0 4627.2 0.261 -1 KYMEDYHQF 9 16 638.769032035333 1275.523511137466 2 638.767333984375 MULTI HCD FTMS 0 0 0 5338 21852.947265625 0.8952458321458022 -1 0.029998779296875 5 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 5.296884461304476 0.3108627248283497 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.3843861310562 0 982.3843861310562 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 1 NaN NaN 104961.4 NaN 3366 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5344 33.526 NaN 27401 35 0 6311.5 0.261 + 33121 YDYDYEQN 8 15 555.2061706925698 1108.3977884519395 2 555.2064208984375 MULTI HCD FTMS 0 0 0 5338 8225.8017578125 0.8791310534694499 3 -0.0800323486328125 6 Unmodified _YDYDYEQN_ REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 77136.3 NaN 3367 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5345 33.529 NaN 26605 35 0 7551.8 0.261 + 22449 QQLNEFRE 8 17 532.2620239257812 NaN 0 532.2620239257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _QQLNEFRE_ ENST00000533607.1_2_12:55377941-55378527:-|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86797.1 NaN 3368 1975 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5347 33.535 NaN 443970 35 0 108890 0.327 -1 SSGPVDPMM 9 41 476.6910442976 951.367535662 2 476.6910400390625 MULTI HCD FTMS 0 0 0 5346 210929.875 1 0 0 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 1 VV{M(Oxidation (M))|F} 3 -1 23.672 0 0 2.4882 0 0 588.1879513739865 0 588.1879513739865 0 8.940162615404077 0 0 0 0.3494850021680094 0 0 0 VV{M(Oxidation (M))|F} 2.4882 - 35 + NaN NaN 152383.3 NaN 3369 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5348 33.539 NaN 119100 35 0 16383 0.261 + 71 ADDTERLV 8 42 459.7299250859369 917.4452972386738 2 459.7294006347656 MULTI HCD FTMS 0 0 0 5346 26827.380859375 0.35922493031585784 4 -0.10669708251953125 2 Unmodified _ADDTERLV_ ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8 12.531546534597751 0.5015908124873912 1 V{I|L} 2 7 24.464 0 0 2.6665 0 0 687.28618056465 0 687.28618056465 0 4.798187706630156 0 0 0 0.3494850021680094 0 0 0 V{I|L} 2.6665 - 15 NaN NaN 102944.7 NaN 3370 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5349 33.543 NaN 34256 35 0 11111 0.261 -1 CFWEECPPE 9 17 627.2332007465116 1252.451848559823 2 627.2330932617188 MULTI HCD FTMS 0 0 0 5346 24990.404296875 0.29415077742176976 15 -0.4132652282714844 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 0.5247636613948944 0.34703895399870666 1 S 1 -1 6.9897 0 0 0.55808 0 0 720.2080874287668 442.18833337955317 1162.39642080832 0 0 0 0 0 0 0 0 0 S 0.55808 - 1 + NaN NaN 80792.1 NaN 3371 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5350 33.546 NaN 69026 35 0 5460 0.261 + 9236 HPLSDHEATL 10 36 560.2728999410213 NaN 0 560.2750244140625 PEAK HCD FTMS 0 0 0 5346 32650.201171875 0.47195431155365086 -44 1.016693115234375 4 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 6.723162845929126 0.3344301934401713 1 T 1 9 9.732 0 0 0.87007 0 0 149.10153095654056 865.3604830377561 1014.4620139942967 0 0 0 0 0 0 0 0.4247425010840047 0 + T 0.87007 + + 23 + NaN NaN 89186.4 NaN 3372 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5351 33.549 NaN 54590 35 0 5680.3 0.261 + -1 REMSMACM 8 27 487.6822806709349 973.3500084086699 2 487.6817932128906 MULTI HCD FTMS 0 0 0 5346 18945.41796875 0.8483213388360221 3 -0.08337020874023438 5 Oxidation (M) _REMSMACM(Oxidation (M))_ REV__SYNE1|p.I7983M|1|0.08|ENSG00000131018|chr6:152155939-152155939|A/C|missense_variant 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.71811 0 0 356.13694796120734 467.1095369928344 823.2464849540418 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.71811 + + 4 + NaN NaN 92542.3 NaN 3373 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5352 33.553 NaN 67436 35 0 7202 0.262 + -1 TAMDVDRDCL 10 39 404.50588366863195 1210.495821606096 3 404.5056457519531 MULTI HCD FTMS 0 0 0 5346 20734.455078125 1 0 0 6 Carbamidomethyl (C),Oxidation (M) _TAM(Oxidation (M))DVDRDC(Carbamidomethyl (C))L_ REV__ENSG00000038382|ENST00000344204|TRIO;REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF;REV__nc|ENSG00000038382|O75962-2|TRIO;REV__nc|ENSG00000038382|O75962-4|TRIO;REV__nc|ENSG00000038382|O75962-5|TRIO 3.3196427980023873 0.4577323075863651 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 86985.1 NaN 3374 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5353 33.556 NaN 26456 35 0 5986.4 0.261 + 20819 PHRQLPGHHG 10 20 568.2966424592523 1134.5787319853046 2 568.297119140625 MULTI HCD FTMS 0 0 0 5346 14437.2734375 1 0 0 7 Unmodified _PHRQLPGHHG_ REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF 3.5964929083625545 0.45626689593999237 1 D{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.3624 0 0 785.4390125959 0 785.4390125959 0 15.45757490560675 0 0 0 0.5 0 0 0 D{[ES]|[DT]|[{I|L}C]} 1.3624 - 2 NaN NaN 81371.2 NaN 3375 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5354 33.559 NaN 46231 35 0 15919 0.261 + -1 TWFYMTTESG 10 14 619.7547179453818 1237.4948829575635 2 619.7543334960938 MULTI HCD FTMS 0 0 0 5346 16877.333984375 0.669234317493209 -2 0.056667327880859375 8 Oxidation (M) _TWFYM(Oxidation (M))TTESG_ REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96545.6 NaN 3376 1976 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5356 33.565 NaN 247430 35 0 44290 0.327 -1 HSLPQEPVM 9 44 527.2549264269156 1052.4952999206312 2 527.2529296875 MULTI HCD FTMS 0 0 0 5355 93391.3359375 0.25378907990885574 -5 0.14667129516601562 1 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 28.494509381512117 0.11816142465008336 1 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 40.352 0 0 3.8339 3.8339 89.054 0 0 0 4.762036441594191 10.187099445819072 4.762036441594191 40.35212480354062 0 2.1989700043360187 0 0 0 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 3.8339 + + 55 NaN NaN 113373.3 NaN 3377 1977 5355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5357 33.569 NaN 63366 35 0 5517 0.261 + 9441 HPVLLTGAPL 10 30 509.3082111013043 1016.6018692694087 2 509.3080139160156 MULTI HCD FTMS 0 0 0 5355 38880.796875 0.3360816426971825 7 -0.19334030151367188 2 Unmodified _HPVLLTGAPL_ ENST00000420887.2_1_3:180538532-180538697:+|nuORF 10.073929032068715 0.4168838835836452 1 HP 2 8 25.969 0 0 2.5545 0 0 0 779.4661348932249 779.4661348932249 18.979400086720375 0 0 0 0 0.5 0 0 0 + HP 2.5545 + + 6 + NaN NaN 90175.9 NaN 3378 1977 5355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5358 33.573 NaN 79198 35 0 8579.8 0.261 + 3468 EGDPKMKL 8 40 459.2416063782801 916.4686598233602 2 459.2325439453125 MULTI HCD FTMS 0 0 0 5355 2448.86669921875 0.15741583837271397 17 -0.4566535949707031 3 Unmodified _EGDPKMKL_ ENSG00000110076|ENST00000265459|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2 5.230669730166228 0.5342319408533849 1 {[DA]|[EG]}D 3 5 27.676 0 0 3.0199 0 0 0 612.3544379818164 612.3544379818164 18.010299956639813 0 0 0 0 0.5 1.5228787452803376 0 0 + {[DA]|[EG]}D 3.0199 + + 13 NaN NaN 89897.2 NaN 3379 1977 5355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5359 33.576 NaN 31139 35 0 4118.9 0.261 -1 KYMEDYHQF 9 16 638.769032035333 1275.523511137466 2 638.7694091796875 MULTI HCD FTMS 0 0 0 5355 23907.025390625 0.9793948880125474 1 -0.023372650146484375 4 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 7.608950283845883 0.29333554423920943 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.38286025215 0 982.38286025215 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 3 NaN NaN 104264.9 NaN 3380 1977 5355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5360 33.58 NaN 23413 35 0 5749.6 0.261 + 34069 YNKKKDRY 8 20 557.803764318411 1113.592975703622 2 557.8036499023438 MULTI HCD FTMS 0 0 0 5355 6684.78466796875 0.1491110110147353 8 -0.22331619262695312 5 Unmodified _YNKKKDRY_ REV__ENSG00000100884|ENST00000689861|CPNE6;REV__ENST00000558995.5_1_14:24543475-24546936:+|nuORF;REV__nc|ENSG00000100884|O95741-2|CPNE6 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99592.5 NaN 3381 1977 5355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5361 33.583 NaN 43129 35 0 9250.4 0.261 + 12853 KYFHPPAHL 9 29 555.2982404763494 NaN 0 555.2984619140625 PEAK HCD FTMS 0 0 0 5355 6076.91650390625 0.3852170130409262 -4 0.11001968383789062 6 Unmodified _KYFHPPAHL_ ENSG00000076770|ENST00000370853|MBNL3;ENSG00000139793|ENST00000679496|MBNL2;ENSG00000152601|ENST00000324210|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;nc|ENSG00000152601|Q9NR56-2|MBNL1;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 4.3292370932331545 0.2742679634796037 1 N 1 9 3.9794 0 0 0.35896 0 0 598.3570572693019 393.15842615299067 991.5154834222926 0 0 0 0 0 0 0 0 0 N 0.35896 - 2 + NaN NaN 82744.6 NaN 3382 1977 5355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5363 33.588 NaN 330940 35 0 43281 0.326 + 15975 LPQHPDVEM 9 54 541.2526160524714 1080.4906791717426 2 541.2527465820312 MULTI HCD FTMS 0 0 0 5362 216890.46875 0.98468700997492 1 -0.03000640869140625 1 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 99.75527289724121 0.004270341300239591 1 {I|L}PQH[DP]VE{M(Oxidation (M))|F} 9 0 + 101.89 0 0 9.4304 9.4304 95.477 0 0 0 71.88933438737884 16.478174818886373 16.478174818886373 14.208187539523749 0 2 1.2218487496163564 1.9604093769761874 0.5 + + {I|L}PQH[DP]VE{M(Oxidation (M))|F};{I|L}P[AG]H[DP]VE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[DP][HQ]P{I|L} 9.4304;8.1154;0.81516 +;-;- + 252 + NaN NaN 137589.3 NaN 3383 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5364 33.593 NaN 381860 35 0 79499 0.261 + 9601 HSLPQEPVM 9 51 527.2549264269156 1052.4952999206312 2 527.2546997070312 MULTI HCD FTMS 0 0 0 5362 134862.375 0.36648579573246953 -4 0.1100311279296875 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 49.55428908609986 0.03219431099695407 1 [HS]{I|L}[QP]EPV{M(Oxidation (M))|F} 9 0 + 52.157 0 0 4.9556 4.9556 82.839 0 0 0 1.8297591317234208 1.8297591317234208 1.8297591317234208 3.295671638727029 0 2.517220322351953 0 0.3054621874040891 0.3807196863200844 + + [HS]{I|L}[QP]EPV{M(Oxidation (M))|F};[HS]{I|L}G[PA]EPV{M(Oxidation (M))|F};{[ET]|[MV]}[WQ]{M(Oxidation (M))|F}PV{M(Oxidation (M))|F};[YT]P{M(Oxidation (M))|F}NA{I|L}{NN|[MP]|[D{I|L}]|[EV]};[YT]PE[QP][YR];[YT]P{M(Oxidation (M))|F}GGA{I|L}{NN|[MP]|[D{I|L}]|[EV]};{[ET]|[MV]}[WQ]P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PNA{I|L}{NN|[MP]|[D{I|L}]|[EV]};[HS]{I|L}G[DP]S{I|L}{NN|[MP]|[D{I|L}]|[EV]};{[ET]|[MV]}[WQ]N[KT]{M(Oxidation (M))|F} 4.9556;4.6425;3.4561;3.3904;2.6544;2.5156;2.3169;2.2513;2.0368;1.4855 +;-;-;-;-;-;-;-;-;- + 461 NaN NaN 143279.9 NaN 3384 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5365 33.596 NaN 115730 35 0 10336 0.261 + 25156 SAIKEEQEL 9 46 523.7718140656035 1045.529075198007 2 523.771728515625 MULTI HCD FTMS 0 0 0 5362 72659.140625 0.11132852694134145 8 -0.23321914672851562 3 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 38.61474834105838 0.07170385841135779 1 QE{I|L} 3 6 29.45 0 0 2.8168 0 0 657.3334828107437 0 657.3334828107437 0 2.623045056675455 0 0 0 0.3252574989159953 0 0 0 + QE{I|L} 2.8168 + + 24 NaN NaN 93253.6 NaN 3385 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5366 33.6 NaN 122540 35 0 16804 0.261 + 20 AAGVGDMVM 9 39 441.68809129984214 881.3616296664843 2 441.6884765625 MULTI HCD FTMS 0 0 0 5362 78353.2578125 0.7397087635853732 -9 0.24944686889648438 4 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 97.07464715276575 0.004340583992084827 1 AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 77.118 0 0 8.7499 8.7499 97.759 0 0 0 4.762036441594191 13.640078085766092 4.762036441594191 60.41833743429045 0 2.6747425010840047 0 0.7059771852360797 0 + + AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAKDD{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F} 8.7499;1.8948 +;- + 92 + NaN NaN 113793.8 NaN 3386 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5367 33.603 NaN 155920 35 0 42792 0.261 -1 NADPQAVTM 9 28 481.71612515155437 961.4176973699088 2 481.7158203125 MULTI HCD FTMS 0 0 0 5362 69444.171875 0.04826652298438643 57 -1.4903907775878906 5 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 AVT{M(Oxidation (M))|F} 4 -1 56.186 0 0 5.844 0 0 525.2201398521338 0 525.2201398521338 0 56.18562527100117 0 0 0 2 0 0.4247425010840047 0 AVT{M(Oxidation (M))|F} 5.844 + + 49 + NaN NaN 107744.4 NaN 3387 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5368 33.606 NaN 43210 35 0 4788.8 0.261 + -1 PHSCDTNVMTI 11 19 617.2659242834393 1232.5172956336785 2 617.2660522460938 MULTI HCD FTMS 0 0 0 5362 18955.640625 0.35759037003996713 7 -0.19994354248046875 6 Oxidation (M) _PHSCDTNVM(Oxidation (M))TI_ REV__ENST00000466375.2_2_22:44579501-44579708:+|nuORF 2.9952420565917617 0.40578455234410343 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85399 NaN 3388 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5369 33.609 NaN 119840 35 0 20866 0.263 + 28707 TSPVALQRA 9 39 471.77209018820156 941.5296274432031 2 472.25836181640625 MULTI HCD FTMS 0 0 0 5362 7277.92724609375 0.2325269913425897 4 -0.11666488647460938 7 Unmodified _TSPVALQRA_ ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B 3.944395688203298 0.32111559684428237 1 SP 2 7 12.078 0 0 1.2828 0 0 187.10725770767493 567.3150118463499 754.4222695540248 0 0 0 0 0 0 0 0.5 0 + SP 1.2828 + + 19 + NaN NaN 113175.7 NaN 3389 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5370 33.613 NaN 131640 35 0 20740 0.261 + 25641 SHALGAKK 8 49 406.24286600841054 810.4711790836211 2 406.2428894042969 MULTI HCD FTMS 0 0 0 5362 50527.39453125 1 0 0 8 Unmodified _SHALGAKK_ REV__ENSG00000182768|ENST00000379095|NGRN;REV__ENST00000561573.1_1_15:90806992-90815017:+|nuORF 9.347437153973935 0.5250182646323369 1 [HS]TVV{I|L}R 7 -1 + 30.92 0 0 3.815 3.815 88.514 0 0 0 19.66072209646573 0.7572071393811797 0.7572071393811797 30.919781961434726 0 0.5 1.0457574905606752 0.4247425010840047 0 [HS]TVV{I|L}R 3.815 - 13 + NaN NaN 114803.2 NaN 3390 1978 5362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5372 33.618 NaN 255830 35 0 35758 0.327 + 638 APIQSEPRV 9 56 498.7773288919901 995.5401048507803 2 498.7773132324219 MULTI HCD FTMS 0 0 0 5371 164298.53125 1 0 0 1 Unmodified _APIQSEPRV_ BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 45.69961567697781 0.039180348357221985 1 AP{I|L}Q[{M(Oxidation (M))|F}T]P 7 4 54.257 0 0 5.45 0 0 0 238.11980615787346 238.11980615787346 37.43456034122062 0 0 0 0 1.3807196863200843 0 0.3807196863200844 0.7302046884880937 AP{I|L}Q[{M(Oxidation (M))|F}T]P 5.45 - 200 + NaN NaN 126164.4 NaN 3391 1979 5371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5373 33.623 NaN 383210 35 0 46939 0.261 -1 0 46 535.2228898803264 1068.4312268274527 2 535.222900390625 MULTI HCD FTMS 0 0 0 5371 185274.828125 0.4754735673165672 -6 0.16339874267578125 2 NaN NaN 1 A[DP]{I|L}{M(Oxidation (M))|F} 5 -1 38.015 0 0 3.5581 0 0 507.18215563780274 0 507.18215563780274 0 19.062959475437747 0 0 0 1.5 0 0.3807196863200844 0 A[DP]{I|L}{M(Oxidation (M))|F} 3.5581 - 85 + NaN NaN 134875.5 NaN 3392 1979 5371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5374 33.626 NaN 87500 35 0 13351 0.261 + 2502 DSGDVAALR 9 30 452.22993209631016 902.4453112594204 2 452.2298889160156 MULTI HCD FTMS 0 0 0 5371 47121.0625 0.3627689086840613 4 -0.1066741943359375 3 Unmodified _DSGDVAALR_ ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 45.69961567697781 0.039180348357221985 1 {[DS]|[MA]|[CV]|TT}[DG]VAA{I|L}R 9 0 + 58.35 0 0 6.4658 6.4658 92.707 0 0 0 58.35016244829767 18.339993556128107 18.339993556128107 30.713337517843655 0 1.6989700043360187 0 0 0.4247425010840047 + + {[DS]|[MA]|[CV]|TT}[DG]VAA{I|L}R;{[DS]|[MA]|[CV]|TT}[DG][Q{I|L}]{I|L}R 6.4658;3.0624 +;- + 42 + NaN NaN 95561.8 NaN 3393 1979 5371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5375 33.63 NaN 43675 35 0 9073.1 0.261 + 30775 VPPTVESSPA 10 23 492.25591083001916 982.4972687268383 2 492.2563781738281 MULTI HCD FTMS 0 0 0 5371 18668.978515625 0.9829023522158015 -1 0.03000640869140625 4 Unmodified _VPPTVESSPA_ TOX4|p.E517A|1|0.14|ENSG00000092203|chr14:21493166-21493166|A/C|missense_variant 6.2057823575117 0.44245551207394906 1 VS{I|L} 3 8 28.94 0 0 2.9456 0 0 0 680.2708223932249 680.2708223932249 21.95046257204389 0 0 0 0 0.4247425010840047 0 0 0 VS{I|L} 2.9456 - 8 + NaN NaN 84804.4 NaN 3394 1979 5371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5376 33.633 NaN 17180 35 0 3105.2 0.261 -1 ECVEVFMEM 9 16 566.7218021732956 1131.429051413391 2 566.721923828125 MULTI HCD FTMS 0 0 0 5371 7521.6298828125 0.4484103978432937 1 -0.023326873779296875 5 Oxidation (M) _ECVEVFMEM(Oxidation (M))_ ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16 4.3292370932331545 0.3181982124262546 1 E{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.0292 0 0 837.3419980460068 0 837.3419980460068 0 22.95880017344075 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.0292 + + 3 + NaN NaN 103477.7 NaN 3395 1979 5371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5377 33.636 NaN 17475 35 0 4038.4 0.261 -1 MSSMEHTEEG 10 16 585.207839595247 1168.401126257294 2 585.2083129882812 MULTI HCD FTMS 0 0 0 5371 10107.2080078125 0.42109453206741365 9 -0.2565345764160156 6 2 Oxidation (M) _M(Oxidation (M))SSM(Oxidation (M))EHTEEG_ ENSG00000141376|ENST00000407086|BCAS3;ENST00000585812.5_1_17:59431721-59456358:+|nuORF;ENST00000587294.5_1_17:59445549-59469483:+|nuORF;ENST00000592702.5_1_17:59431721-59469483:+|nuORF;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3 1.4819007175156935 0.4674597685733628 1 G 1 -1 6.9897 0 0 0.59823 0 0 601.7066815324878 506.65268884830317 1108.359370380791 0 0 0 0 0 0 0 0 0 G 0.59823 + + 2 + NaN NaN 80818 NaN 3396 1979 5371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5379 33.642 NaN 898870 35 0 102850 0.327 + 15798 LPHSGEAQL 9 82 476.24837343689916 950.4821939405983 2 476.2481689453125 MULTI HCD FTMS 0 0 0 5378 415113.625 0.679077084211342 -2 0.053333282470703125 1 Unmodified _LPHSGEAQL_ ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1 82.5293158979368 0.005033931517079822 1 {[QN]|[E{I|L}]|[KN]}AN[YT]Q{I|L} 8 6 + 50.378 0 0 5.3002 5.3002 87.518 0 0 0 1.7937044036578413 22.87266521851273 1.7937044036578413 9.262137858390815 0 0.7302046884880937 0 1.120371515030528 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}AN[YT]Q{I|L};{[QN]|[E{I|L}]|[KN]}AGG[YT]Q{I|L};{[QN]|[E{I|L}]|[KN]}AN[YT][AG]{I|L};[VP][HT]GEAQ{I|L};[VP][HT]GEA[AG]{I|L} 5.3002;4.3258;4.3258;3.3013;1.8856 -;-;-;-;- 910 NaN NaN 213119.9 NaN 3397 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5380 33.646 NaN 114460 35 0 10091 0.261 + 32378 VYVSRPSHF 9 36 546.2850135159035 1090.555474098607 2 546.28515625 MULTI HCD FTMS 0 0 0 5378 30648.294921875 0.524924214801112 5 -0.14661026000976562 2 Unmodified _VYVSRPSHF_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 16.149105407346934 0.22083165093524068 1 [YV]V[DV]R 6 6 34.666 0 0 3.1787 0 0 0 356.12555872135005 356.12555872135005 20.993624753846092 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]V[DV]R 3.1787 - 82 + NaN NaN 127005.8 NaN 3398 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5381 33.65 NaN 78981 35 0 9763.4 0.261 -1 LPDDPAKTTM 10 37 552.7659068832946 1103.5172608333892 2 552.7656860351562 MULTI HCD FTMS 0 0 0 5378 36756.7265625 0.2771504417042623 20 -0.5564384460449219 3 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 9.5439744041441 0.42184090036563754 1 {I|L}PDD 4 -1 41.938 0 0 3.8004 0 0 0 660.3026021322993 660.3026021322993 34.94850021680094 0 0 0 0 1 0 0 0 {I|L}PDD 3.8004 + + 17 + NaN NaN 97265.3 NaN 3399 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5382 33.653 NaN 251780 35 0 98165 0.264 + 837 AWAPKPYHKF 10 39 415.5573742995963 1243.650293498989 3 415.55712890625 MULTI HCD FTMS 0 0 0 5378 30027.736328125 0.7021798439293935 3 -0.08334732055664062 4 Unmodified _AWAPKPYHKF_ CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|5|fusion;ENSG00000071054|ENST00000324219|MAP4K4;ENSG00000141503|ENST00000355280|MINK1;ENSG00000154310|ENST00000436636|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant 9.5439744041441 0.42184090036563754 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A 3 7 33.741 0 0 2.7131 0 0 0 912.473888337141 912.473888337141 33.74098423245101 0 0 0 0 0.805462187404089 1.5228787452803376 0 0 + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A 2.7131 + + 7 + NaN NaN 123370.7 NaN 3400 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5383 33.656 NaN 37302 35 0 6249.4 0.261 + 26845 SYIKSSSSL 9 22 486.25542413546356 NaN 0 486.2557067871094 PEAK HCD FTMS 0 0 0 5378 16562.185546875 0.7828001329308483 1 -0.033367156982421875 5 Unmodified _SYIKSSSSL_ ENSG00000184661|ENST00000330560|CDCA2 8.745405648335112 0.25286782695573473 1 {I|L} 1 8 10.797 0 0 1.1125 0 0 250.09265983257472 604.2968233697874 854.389483202362 0 0 0 0 0 0.3807196863200844 0 0 0 + {I|L} 1.1125 + + 1 + NaN NaN 92990.3 NaN 3401 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5384 33.66 NaN 43810 35 0 6871.6 0.261 -1 SLSMGCMMFE 10 24 620.7197791635792 1239.4250053939584 2 620.7194213867188 MULTI HCD FTMS 0 0 0 5378 30028.4296875 0.8989656246667154 -1 0.023326873779296875 6 Carbamidomethyl (C),3 Oxidation (M) _SLSM(Oxidation (M))GC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))FE_ TMEM244|p.V37M|1|0.11|ENSG00000203756|chr6:129845777-129845777|C/T|missense_variant 3.5964929083625545 0.45626689593999237 1 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0953 0 0 973.3318958966812 0 973.3318958966812 0 20.48455006504028 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.0953 - 4 NaN NaN 87237.8 NaN 3402 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5385 33.663 NaN 41518 35 0 5558.7 0.264 -1 0 34 469.2153726366327 468.2080961700327 1 469.21844482421875 MULTI HCD FTMS 0 0 0 5378 10540.4462890625 0.6468554051451935 1 -0.033367156982421875 7 NaN NaN 1 [YT]W 3 -1 + 17.447 0 0 3.7264 3.7264 87.175 0 0 0 10.000000000000004 10.000000000000004 10.000000000000004 17.44727494896694 0 0 0 0 0 [YT]W 3.7264 - 7 NaN NaN 98068.4 NaN 3403 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5386 33.666 NaN 19377 35 0 5969.5 0.261 + -1 KRQRQNMW 8 19 581.7962513461226 NaN 0 581.7957763671875 PEAK HCD FTMS 0 0 0 5378 3296.65673828125 0.37923600455158274 1 -0.033367156982421875 8 Oxidation (M) _KRQRQNM(Oxidation (M))W_ REV__ENSG00000139233|ENST00000266604|LLPH;REV__SLC2A11-LLPH|1|fusion;REV__SLC2A11-LLPH|2|fusion;REV__SLC2A11-LLPH|3|fusion 0.6903765706972694 0.38822285293237185 1 G 1 -1 2.4743 0 0 0.21301 0 0 598.8047086475202 502.72397791080317 1101.5286865583234 0 0 0 0 0 0 0 0 0 G 0.21301 - 1 + NaN NaN 80461.9 NaN 3404 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5387 33.67 NaN 42826 35 0 7195.6 0.261 -1 DTGYTERYM 9 21 576.2373454770075 1150.4601380208148 2 576.238037109375 MULTI HCD FTMS 0 0 0 5378 13440.92578125 0.09508975013577235 -27 0.6965560913085938 9 Oxidation (M) _DTGYTERYM(Oxidation (M))_ ENSG00000074603|ENST00000300141|DPP8;ENSG00000142002|ENST00000262960|DPP9;ENST00000560048.2_1_15:65743312-65748006:-|nuORF;nc|ENSG00000074603|Q6V1X1-2|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9 3.944395688203298 0.32111559684428237 1 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8227 0 0 856.371385642775 0 856.371385642775 0 12.117581349478641 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.8227 - 3 NaN NaN 114212.9 NaN 3405 1980 5378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5389 33.675 NaN 293550 35 0 30807 0.327 + 2719 DVLSLVSHR 9 54 513.2905760202501 1024.5665991073001 2 513.2904663085938 MULTI HCD FTMS 0 0 0 5388 141217.359375 0.6334276919540295 2 -0.04998016357421875 1 Unmodified _DVLSLVSHR_ REV__ENST00000342572.12_1_17:80401329-80401857:-|nuORF;REV__ENST00000582438.1_1_17:80401329-80402344:-|nuORF 36.12702656103203 0.08312389501731911 1 DVSHTVV{I|L}R 9 -1 + 130.58 0 0 12.745 12.745 98.718 0 0 0 110.13805019828801 12.98332479720628 12.98332479720628 37.8342375548695 0 2.7658715643802765 2 1.6549471895720984 0 DVSHTVV{I|L}R;[DV]SHTVV{I|L}R;[VS]DHTVV{I|L}R;[HS][DV]TVV{I|L}R;[HT]{[CP]|[EA]}TVV{I|L}R;[VS][HS]EVV{I|L}R;[HS][VS]EVV{I|L}R;[HT][TA]EVV{I|L}R 12.745;9.0525;7.0781;5.3215;4.6654;4.3231;4.297;3.6409 -;-;-;-;-;-;-;- 261 + NaN NaN 119950.8 NaN 3406 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5390 33.679 NaN 134550 35 0 39573 0.261 + 25071 SADKPDSVL 9 30 466.2399336502494 930.4653143672988 2 466.23968505859375 MULTI HCD FTMS 0 0 0 5388 97503.9453125 1 0 0 2 Unmodified _SADKPDSVL_ ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-4|MCM9 32.78568957990786 0.09846250359632436 1 V{I|L} 2 7 24.464 0 0 2.6292 0 0 700.3042986529686 0 700.3042986529686 0 18.69402840463316 0 0 0 0.3494850021680094 0 0 0 + V{I|L} 2.6292 + + 16 NaN NaN 105768.8 NaN 3407 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5391 33.683 NaN 135400 35 0 16735 0.261 + -1 RTSEYPMI 8 47 506.74197417886694 1011.4693954245339 2 506.7420959472656 MULTI HCD FTMS 0 0 0 5388 27099.064453125 0.3971531774038054 -4 0.11007308959960938 3 Oxidation (M) _RTSEYPM(Oxidation (M))I_ REV__ENSG00000105426|ENST00000262963|PTPRS;REV__ENSG00000153707|ENST00000381196|PTPRD;REV__ENST00000588552.5_1_19:5159112-5286160:-|nuORF;REV__nc|ENSG00000105426|Q13332-2|PTPRS;REV__nc|ENSG00000105426|Q13332-3|PTPRS;REV__nc|ENSG00000105426|Q13332-4|PTPRS;REV__nc|ENSG00000105426|Q13332-5|PTPRS;REV__nc|ENSG00000105426|Q13332-6|PTPRS;REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-3|PTPRD;REV__nc|ENSG00000153707|P23468-4|PTPRD;REV__nc|ENSG00000153707|P23468-5|PTPRD;REV__nc|ENSG00000153707|P23468-6|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD 7.910154910731844 0.5302565402355366 1 Q 1 -1 4.6041 0 0 0.45519 0 0 276.1724726723839 604.2168673150999 880.3893399874837 0 0 0 0 0 0 0 0 0 Q 0.45519 - 16 + NaN NaN 117170.9 NaN 3408 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5392 33.686 NaN 76633 35 0 14364 0.261 + 2464 DRFFMWIFF 9 26 436.87918658585176 NaN 0 436.8791198730469 PEAK HCD FTMS 0 0 0 5388 26710.166015625 0.9068947744879603 -1 0.033367156982421875 4 Unmodified _DRFFMWIFF_ ENSG00000174343|ENST00000310169|CHRNA9 0.9622753412299311 0.2905837902567025 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91159.3 NaN 3409 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5393 33.69 NaN 25686 35 0 4627.9 0.261 -1 NEMQPNGKVF 10 19 590.2768553523314 1178.5391577714627 2 590.277099609375 MULTI HCD FTMS 0 0 0 5388 14298.341796875 0.5098490005860573 4 -0.11324310302734375 5 Oxidation (M) _NEM(Oxidation (M))QPNGKVF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 2.735195868890462 0.4608258780945842 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87006 NaN 3410 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5394 33.693 NaN 47689 35 0 5108.3 0.263 + 3796 EPEEESERHIL 11 31 456.55259995686276 1366.6359704707884 3 456.5526428222656 MULTI HCD FTMS 0 0 0 5388 12465.28515625 0.03212122853157935 24 -0.6295547485351562 6 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 1.9275035174196113 0.4104672908605315 1 EE[HA] 4 8 16.198 0 0 1.1852 0 0 882.4545288371387 0 882.4545288371387 0 12.129843661361406 0 0 0 0 0 0 0 EE[HA] 1.1852 - 10 NaN NaN 83774.1 NaN 3411 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5395 33.696 NaN 107910 35 0 18121 0.261 + 4288 EVLTWSNK 8 25 488.7588177930256 975.5030826528513 2 488.75885009765625 MULTI HCD FTMS 0 0 0 5388 17203.11328125 0.619710348536651 -4 0.11007308959960938 7 Unmodified _EVLTWSNK_ ENST00000426654.6_1_16:69726147-69726186:+|nuORF 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101225.2 NaN 3412 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5396 33.7 NaN 39878 35 0 6676.3 0.261 + 25907 SNRLAEGGAL 10 26 494.26416396401913 986.5137749948383 2 494.7754821777344 MULTI HCD FTMS 0 0 0 5388 5316.49755859375 0.9896852894825202 -2 0.05669403076171875 8 Unmodified _SNRLAEGGAL_ REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF 2.498486711656943 0.462078817294651 1 A{I|L} 2 -1 20.969 0 0 2.1256 0 0 784.386522361525 0 784.386522361525 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 2.1256 + + 1 NaN NaN 90639 NaN 3413 1981 5388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5398 33.705 NaN 101510 35 0 14241 0.327 -1 FPDSEPPRM 9 43 546.2450052822049 1090.4754576312098 2 546.244873046875 MULTI HCD FTMS 0 0 0 5397 25638.455078125 0.38015486772050994 -11 0.3100433349609375 1 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 16.149105407346934 0.22083165093524068 1 [DP]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}RDPE 9 -1 + 34.359 0 0 3.1508 3.1508 80.766 0 0 0 1.451199659452847 23.18758762624413 1.451199659452847 3.4948500216800973 0 0.5 0 0.3494850021680094 0 [DP]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}RDPE;[DP]{M(Oxidation (M))|F}R{[ES]|[DT]|[{I|L}C]}DPE 3.1508;2.8303 -;- 91 NaN NaN 96190.5 NaN 3414 1982 5397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5399 33.709 NaN 51597 35 0 5581.8 0.261 -1 TCCSSCSSSS 10 28 561.6785603028918 1121.3425676725835 2 561.6785278320312 MULTI HCD FTMS 0 0 0 5397 16738.931640625 0.6257190926856208 -4 0.11666488647460938 2 3 Carbamidomethyl (C) _TC(Carbamidomethyl (C))C(Carbamidomethyl (C))SSC(Carbamidomethyl (C))SSSS_ SH3PXD2A|p.S704C|1|0.19|ENSG00000107957|chr10:103603107-103603107|G/C|missense_variant 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 101679.1 NaN 3415 1982 5397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5400 33.713 NaN 89153 35 0 21948 0.261 + 17407 LYQYPCFY 8 33 548.7433437631948 1095.4721345931896 2 549.760498046875 MULTI HCD FTMS 0 0 0 5397 6121.8173828125 0.7576329018430251 -2 0.06333160400390625 3 Unmodified _LYQYPCFY_ SOX8|p.H409Y|1|0.21|ENSG00000005513|chr16:985270-985270|C/T|missense_variant 6.354104778181461 0.5325651638111438 1 NQQ 3 7 10.458 0 0 0.95462 0 0 707.3144398419937 0 707.3144398419937 0 -0.3444064470390611 -0.3444064470390611 0 0 0 0 0 0 NQQ 0.95462 - 17 NaN NaN 104664.7 NaN 3416 1982 5397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5401 33.716 NaN 22181 35 0 5436.5 0.261 -1 TNLTCCMEHGE 11 12 627.2332007465116 1252.451848559823 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5397 17509.736328125 0.20609920880760751 21 -0.5596389770507812 4 Oxidation (M) _TNLTCCM(Oxidation (M))EHGE_ ENSG00000026751|ENST00000368043|SLAMF7;nc|ENSG00000026751|Q9NQ25-2|SLAMF7;nc|ENSG00000026751|Q9NQ25-3|SLAMF7;nc|ENSG00000026751|Q9NQ25-5|SLAMF7;nc|ENSG00000026751|Q9NQ25-7|SLAMF7 0.26902006276349055 0.4177408358971266 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95798.4 NaN 3417 1982 5397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5402 33.719 NaN 42310 35 0 6620.4 0.264 -1 LAHICCNT 8 27 494.7218382278239 987.4291235224479 2 495.220703125 MULTI HCD FTMS 0 0 0 5397 5010.60498046875 0.09011437550344949 14 -0.3733634948730469 5 2 Carbamidomethyl (C) _LAHIC(Carbamidomethyl (C))C(Carbamidomethyl (C))NT_ ENST00000232564.7_1_3:179117970-179118123:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86145.4 NaN 3418 1982 5397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5404 33.725 NaN 735900 35 0 166250 0.327 + 9602 HSLPQEPVM 9 62 527.2549264269156 1052.4952999206312 2 527.255126953125 MULTI HCD FTMS 0 0 0 5403 357436.1875 0.971325661434612 1 -0.03328704833984375 1 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 90.13494162714682 0.004522430935000059 1 [HS]{I|L}PQEPV{M(Oxidation (M))|F} 9 0 + 87.29 0 0 8.2937 8.2937 93.777 0 0 0 5.86696871556164 5.86696871556164 5.86696871556164 13.015384402724592 0 3.110924374808178 0 0.7302046884880937 0.3807196863200844 + + [HS]{I|L}PQEPV{M(Oxidation (M))|F};[HS]{I|L}P[AG]EPV{M(Oxidation (M))|F};[HS]{I|L}G[PA]EPV{M(Oxidation (M))|F};[YT]PEQ[R{I|L}]{M(Oxidation (M))|F};{[ET]|[MV]}MEQ[R{I|L}]{M(Oxidation (M))|F};[YT]PEQP[YR];[YT]PE[AG][R{I|L}]{M(Oxidation (M))|F};{[ET]|[MV]}ME[AG][R{I|L}]{M(Oxidation (M))|F};[YT]PE[AG]P[YR];[YT]PE[PA]G[YR] 8.2937;7.057;6.3675;5.5386;5.4629;5.1284;4.6586;4.5829;4.2484;3.0825 +;-;-;-;-;-;-;-;-;- + 418 NaN NaN 215784.8 NaN 3419 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5405 33.729 NaN 193000 35 0 15686 0.261 + 15976 LPQHPDVEM 9 50 541.2526160524714 1080.4906791717426 2 541.2526245117188 MULTI HCD FTMS 0 0 0 5403 61396.921875 0.2787432374100464 6 -0.16988754272460938 2 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 56.17704186161178 0.022929533404884107 1 KE{M(Oxidation (M))|F} 3 7 33.232 0 0 3.0756 0 0 658.3033314435562 0 658.3033314435562 0 7.986227628737836 0 0 0 0.7302046884880937 0 0.4247425010840047 0 KE{M(Oxidation (M))|F} 3.0756 - 68 NaN NaN 116725.3 NaN 3420 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5406 33.733 NaN 86368 35 0 14230 0.261 -1 VLTMPFCF 8 26 515.738584495348 NaN 0 515.7288818359375 PEAK HCD FTMS 0 0 0 5403 3011.424072265625 0.6854933284013294 -1 0.020015716552734375 3 Carbamidomethyl (C),Oxidation (M) _VLTM(Oxidation (M))PFC(Carbamidomethyl (C))F_ ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 2.577480529830294 0.38822285293237185 1 D 1 -1 4.6041 0 0 0.44723 0 0 390.17620645786116 521.2377413385374 911.4139477963986 0 0 0 0 0 0 0 0 0 D 0.44723 - 2 + NaN NaN 89316.4 NaN 3421 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5407 33.736 NaN 25504 35 0 3500.3 0.261 -1 KYMEDYHQF 9 18 638.769032035333 1275.523511137466 2 638.7694091796875 MULTI HCD FTMS 0 0 0 5403 9720.013671875 0.3981980838728499 7 -0.19657516479492188 4 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 5.296884461304476 0.3108627248283497 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.3850950780761 0 982.3850950780761 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 2 NaN NaN 84034.3 NaN 3422 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5408 33.74 NaN 40719 35 0 5447.5 0.263 -1 LFRNILVT 8 31 509.3082111013043 1016.6018692694087 2 509.3078308105469 MULTI HCD FTMS 0 0 0 5403 8688.916015625 0.0751061038480608 13 -0.3533477783203125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFRNILVT_ ENST00000520635.5_1_8:82627220-82630434:-|nuORF;ENST00000524339.5_1_8:82626874-82630434:-|nuORF 0.6903765706972694 0.5409681170271811 1 G 1 -1 5.4846 0 0 0.5395 0 0 226.95899925163366 729.6154879205686 956.5744871722022 0 0 0 0 0 0 0 0 0 G 0.5395 - 1 + NaN NaN 87318.2 NaN 3423 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5409 33.743 NaN 39705 35 0 4977.3 0.261 + -1 MTTHDIPAM 9 28 524.7255400470598 1047.4365271609195 2 524.7255859375 MULTI HCD FTMS 0 0 0 5403 9882.5810546875 0.5016625147998865 21 -0.5629310607910156 6 2 Oxidation (M) _M(Oxidation (M))TTHDIPAM(Oxidation (M))_ REV__ENSG00000275700|ENST00000619387|AATF 4.3292370932331545 0.3181982124262546 1 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 18.672 0 0 1.7827 0 0 638.303300697832 0 638.303300697832 0 9.719712763997565 0 0 0 0 0 0 0 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.7827 - 11 + NaN NaN 97042.8 NaN 3424 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5410 33.746 NaN 27033 35 0 4902.8 0.261 + -1 KYNKRLCQ 8 18 555.2982404763494 NaN 0 555.2975463867188 PEAK HCD FTMS 0 0 0 5403 12014.0478515625 0.7615730156790484 2 -0.063262939453125 7 Carbamidomethyl (C) _KYNKRLC(Carbamidomethyl (C))Q_ REV__ENSG00000176463|ENST00000318445|SLCO3A1;REV__ENST00000555549.5_1_15:92641439-92706362:+|nuORF;REV__nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82159.4 NaN 3425 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5411 33.749 NaN 32974 35 0 3202.8 0.261 + 21303 PSEAATKRQ 9 24 494.26416396401913 986.5137749948383 2 494.2640075683594 MULTI HCD FTMS 0 0 0 5403 10668.0966796875 0.6267732351989425 2 -0.063262939453125 8 Unmodified _PSEAATKRQ_ REV__ENSG00000226792|ENST00000563710|C13orf42 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89389.7 NaN 3426 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5412 33.753 NaN 54980 35 0 7967.8 0.261 + 20551 PEDLRART 8 41 479.2583751112092 NaN 0 479.25823974609375 PEAK HCD FTMS 0 0 0 5403 1967.4364013671875 0.3356091266337719 1 -0.03328704833984375 9 Unmodified _PEDLRART_ ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2;nc|ENSG00000203485|Q27J81-3|INF2 2.302733041254933 0.38822285293237185 1 G 1 8 3.4949 0 0 0.36538 0 0 477.67860217378717 418.78180872135005 896.4604108951372 0 0 0 0 0 0 0 0 0 G 0.36538 - 2 + NaN NaN 81428.6 NaN 3427 1983 5403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5414 33.758 NaN 147490 35 0 28450 0.327 + 28725 TSSPPDKVL 9 34 472.25851499527084 942.5024770573417 2 472.25836181640625 MULTI HCD FTMS 0 0 0 5413 67176.71875 0.5927886578848167 2 -0.06325149536132812 1 Unmodified _TSSPPDKVL_ ENSG00000163961|ENST00000318037|RNF168 11.494710602746466 0.2610445893512368 1 V{I|L} 2 7 17.959 0 0 1.9054 0 0 712.3396141198152 0 712.3396141198152 0 0.5115252244738109 0 0 0 0 0 0 0 + V{I|L} 1.9054 + + 5 NaN NaN 103779.6 NaN 3428 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5415 33.763 NaN 139080 35 0 20803 0.261 + 21 AAGVGDMVM 9 39 441.68809129984214 881.3616296664843 2 441.6885070800781 MULTI HCD FTMS 0 0 0 5413 81988.4921875 0.7740278818957966 -3 0.0832672119140625 2 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 85.35673624503755 0.00464763827098139 1 AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 74.86 0 0 8.4937 8.4937 87.755 0 0 0 0.8830902056951828 0.8830902056951828 0.8830902056951828 0.8830902056951828 0 2.774227503252014 0 0.3807196863200844 0 + + AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.4937;8.3935 +;- + 85 + NaN NaN 102393.7 NaN 3429 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5416 33.766 NaN 216290 35 0 19958 0.261 -1 LPQHPDVEM 9 64 541.2526160524714 1080.4906791717426 2 541.26904296875 MULTI HCD FTMS 0 0 0 5413 49569.75390625 0.22504766134006485 7 -0.18993377685546875 3 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 20.41453444215458 0.18397929046831515 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}A[DP]VE{M(Oxidation (M))|F} 10 -1 + 50.168 0 0 4.643 4.643 84.751 0 0 0 4.457319761734979 9.30400924012389 4.457319761734979 9.075221787320515 0 0.8807196863200843 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}A[DP]VE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}A[DP]V{M(Oxidation (M))|F}E 4.643;3.8031 -;- 319 NaN NaN 113909.9 NaN 3430 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5417 33.769 NaN 39038 35 0 4612.4 0.261 -1 VYMAWNIPQ 9 29 569.2742362545673 1136.5339195759345 2 569.7760620117188 MULTI HCD FTMS 0 0 0 5413 8635.6328125 0.6342620612092518 1 -0.02997589111328125 4 Oxidation (M) _VYM(Oxidation (M))AWNIPQ_ ENSG00000110328|ENST00000227756|GALNT18 4.3292370932331545 0.3181982124262546 1 VY 2 -1 37.959 0 0 3.3399 0 0 0 871.3831390161253 871.3831390161253 37.95880017344075 0 0 0 0 0 2 0 0 VY 3.3399 + + 3 + NaN NaN 78419.4 NaN 3431 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5418 33.776 NaN 17452 35 0 4158.5 0.261 + 8328 GYFFFFGGYE 10 14 617.2661743164062 NaN 0 617.2661743164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _GYFFFFGGYE_ ENSG00000102743|ENST00000338625|SLC25A15;ENSG00000120329|ENST00000239451|SLC25A2 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103596.8 NaN 3432 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5419 33.779 NaN 36404 35 0 5973.4 0.261 -1 FPMLARMVL 9 20 555.2982404763494 NaN 0 555.2987060546875 PEAK HCD FTMS 0 0 0 5413 14498.216796875 0.9190450066776387 3 -0.0799713134765625 6 2 Oxidation (M) _FPM(Oxidation (M))LARM(Oxidation (M))VL_ ENST00000533528.1_1_11:82783150-82803114:+|nuORF 7.910154910731844 0.25691533546754686 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76508 NaN 3433 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5420 33.783 NaN 30662 35 0 4697.1 0.261 + 24363 RYIHPQQEAF 10 14 644.8255108422948 1287.6364687513894 2 645.3270874023438 MULTI HCD FTMS 0 0 0 5413 2535.4404296875 0.33319911465725055 -2 0.053302764892578125 7 Unmodified _RYIHPQQEAF_ ENSG00000071894|ENST00000616140|CPSF1 4.5288652416199255 0.4513317009562028 1 A{M(Oxidation (M))|F} 2 8 20.969 0 0 1.6285 0 0 1051.5180325796762 0 1051.5180325796762 0 20.969100130080562 0 0 0 0 0 0 0 + A{M(Oxidation (M))|F} 1.6285 + + 2 NaN NaN 92760.5 NaN 3434 1984 5413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5422 33.788 NaN 626440 35 0 70637 0.326 + 15799 LPHSGEAQL 9 74 476.24837343689916 950.4821939405983 2 476.2482604980469 MULTI HCD FTMS 0 0 0 5421 323191.9375 0.5287040109996735 3 -0.08659744262695312 1 Unmodified _LPHSGEAQL_ ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1 78.14939416004806 0.006451203201226903 1 {[QN]|[E{I|L}]|[KN]}AN[YT]Q{I|L} 8 6 + 47.674 0 0 5.0157 5.0157 87.058 0 0 0 2.1655142484887193 24.648415687162956 2.1655142484887193 9.262137858390815 0 0.7614393726401688 0 0.9436726795685342 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}AN[YT]Q{I|L};{[QN]|[E{I|L}]|[KN]}AGG[YT]Q{I|L};{[QN]|[E{I|L}]|[KN]}AN[YT][AG]{I|L} 5.0157;4.0413;4.0413 -;-;- 331 NaN NaN 182880.8 NaN 3435 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5423 33.793 NaN 689970 35 0 82583 0.261 -1 0 60 535.2228898803264 1068.4312268274527 2 535.2229614257812 MULTI HCD FTMS 0 0 0 5421 389663.78125 1 0 0 2 NaN NaN 1 T{I|L}[DN]APD{I|L}{M(Oxidation (M))|F} 9 -1 59.703 0 0 5.5879 0 0 64.00180773078269 0 64.00180773078269 0 36.19070971708595 0 0 0 0.8494850021680094 0 1.4119543704721593 0 T{I|L}[DN]APD{I|L}{M(Oxidation (M))|F} 5.5879 - 193 + NaN NaN 186070.8 NaN 3436 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5424 33.796 NaN 114230 35 0 36281 0.261 -1 NADPQAVTM 9 25 481.71612515155437 961.4176973699088 2 481.71575927734375 MULTI HCD FTMS 0 0 0 5421 54922.1484375 0.03817312624423138 64 -1.6759414672851562 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 AVT{M(Oxidation (M))|F} 4 -1 53.928 0 0 5.6092 0 0 525.2192853599463 0 525.2192853599463 0 53.92790030352131 0 0 0 1.9247425010840047 0 0.4247425010840047 0 AVT{M(Oxidation (M))|F} 5.6092 + + 40 + NaN NaN 96924 NaN 3437 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5425 33.799 NaN 50837 35 0 5463.4 0.261 + 639 APIQSEPRV 9 29 498.7773288919901 995.5401048507803 2 498.77716064453125 MULTI HCD FTMS 0 0 0 5421 19846.423828125 0.12079489498251372 6 -0.1599578857421875 4 Unmodified _APIQSEPRV_ BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 10.150570793230772 0.27265765907388223 1 AP{I|L}Q 4 5 28.928 0 0 2.9057 0 0 0 583.2875460260374 583.2875460260374 28.927900303521312 0 0 0 0 0 0 0 0 + AP{I|L}Q 2.9057 + + 8 + NaN NaN 84838.8 NaN 3438 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5426 33.803 NaN 38078 35 0 4920 0.261 -1 LEDKTETM 8 28 491.72373666326206 981.4329203933241 2 491.7236633300781 MULTI HCD FTMS 0 0 0 5421 11534.8583984375 0.6171825401594412 1 -0.033275604248046875 5 Oxidation (M) _LEDKTETM(Oxidation (M))_ ENSG00000185823|ENST00000329468|NPAP1 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90946.3 NaN 3439 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5427 33.806 NaN 19718 35 0 4024.4 0.261 + 12676 KWGYLYYA 8 14 532.2637064089056 1062.512859884611 2 532.2634887695312 MULTI HCD FTMS 0 0 0 5421 6643.1171875 0.549219323297532 1 -0.033275604248046875 6 Unmodified _KWGYLYYA_ REV__ENSG00000070614|ENST00000261797|NDST1;REV__nc|ENSG00000070614|P52848-2|NDST1;REV__nc|ENSG00000070614|P52848-3|NDST1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77567.9 NaN 3440 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5428 33.809 NaN 40467 35 0 4448 0.263 + 25844 SLWLFRQHH 9 36 408.5514495997967 1222.6325193995901 3 408.885498046875 MULTI HCD FTMS 0 0 0 5421 18219 0.8879173882641549 -1 0.02997589111328125 7 Unmodified _SLWLFRQHH_ ENSG00000185561|ENST00000330676|TLCD2 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 89450 NaN 3441 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5429 33.813 NaN 37892 35 0 6101.9 0.261 -1 EQLDRLMQ 8 31 524.7578141485478 1047.5010753638956 2 524.7572631835938 MULTI HCD FTMS 0 0 0 5421 7856.71533203125 0.7508739517758561 1 -0.033275604248046875 8 Oxidation (M) _EQLDRLM(Oxidation (M))Q_ ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC 2.0597508629832335 0.5389364538378849 1 [W{M(Oxidation (M))|F}]NN 4 -1 11.427 0 0 1.0909 0 0 0 483.2326754205688 483.2326754205688 7.447274948966935 0 0 0 0 0 0 0 0 [W{M(Oxidation (M))|F}]NN 1.0909 - 6 + NaN NaN 91746.2 NaN 3442 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5430 33.816 NaN 17033 35 0 4775.3 0.261 -1 PMDGDCWLC 9 18 585.207839595247 1168.401126257294 2 585.2086791992188 MULTI HCD FTMS 0 0 0 5421 4261.6474609375 0.17755214318460963 14 -0.3799095153808594 9 2 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))DGDC(Carbamidomethyl (C))WLC(Carbamidomethyl (C))_ ENST00000289968.10_1_16:24930781-24931099:-|nuORF;ENST00000537417.1_16:24930737-24931099:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97407.8 NaN 3443 1985 5421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5432 33.821 NaN 104810 35 0 21767 0.326 + 34678 YPTRTNEEL 9 38 561.77449260169 1121.5344322701799 2 561.7747802734375 MULTI HCD FTMS 0 0 0 5431 32766.322265625 1 0 0 1 Unmodified _YPTRTNEEL_ ENSG00000015532|ENST00000017003|XYLT2;nc|ENSG00000015532|Q9H1B5-2|XYLT2;XYLT2|p.G529Afs*78|1|0.35|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant 7.101721422024254 0.29718071671418667 1 TE{I|L} 3 6 30.445 0 0 2.7146 0 0 760.37211806465 0 760.37211806465 0 27.346368802282015 0 0 0 0 0 0.4247425010840047 0 TE{I|L} 2.7146 - 10 NaN NaN 100736 NaN 3444 1986 5431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5433 33.826 NaN 62218 35 0 6486.5 0.261 + -1 PMFYLLLL 8 31 513.2905760202501 1024.5665991073001 2 513.2905883789062 MULTI HCD FTMS 0 0 0 5431 22649.287109375 0.1015929324949223 7 -0.1800384521484375 2 Oxidation (M) _PM(Oxidation (M))FYLLLL_ REV__ENSG00000119227|ENST00000412723|PIGZ 2.8892196856762586 0.5377058178582064 1 [DV]SHTV 6 -1 24.87 0 0 2.4274 0 0 0 383.24192224674067 383.24192224674067 14.412450368561592 0 0 0 0 0 0 1 0 [DV]SHTV 2.4274 - 17 + NaN NaN 98719.7 NaN 3445 1986 5431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5434 33.829 NaN 22334 35 0 6673.4 0.261 -1 SLSMGCMMFE 10 15 620.7197791635792 1239.4250053939584 2 620.7194213867188 MULTI HCD FTMS 0 0 0 5431 16428.310546875 0.49181680849391807 5 -0.12668228149414062 3 Carbamidomethyl (C),3 Oxidation (M) _SLSM(Oxidation (M))GC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))FE_ TMEM244|p.V37M|1|0.11|ENSG00000203756|chr6:129845777-129845777|C/T|missense_variant 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86545.5 NaN 3446 1986 5431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5435 33.833 NaN 58115 35 0 12485 0.261 + 25755 SLCSFIIETCL 11 27 614.8012066754803 1227.5878604177606 2 614.800048828125 MULTI HCD FTMS 0 0 0 5431 22425.94921875 0.6266540005134573 -1 0.033275604248046875 4 Unmodified _SLCSFIIETCL_ ENSG00000155561|ENST00000285968|NUP205 9.38312468134398 0.3753269387758208 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SSP 5 9 48.456 0 0 3.9472 0 0 0 719.3465059869749 719.3465059869749 37.99803764475705 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SSP 3.9472 - 11 + NaN NaN 103923.1 NaN 3447 1986 5431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5437 33.838 NaN 180320 35 0 28520 0.327 + 9360 HPSLSDTKQ 9 52 506.7565353958258 NaN 0 506.7417297363281 PEAK HCD FTMS 0 0 0 5436 3690.13134765625 1 0 0 1 Unmodified _HPSLSDTKQ_ ENSG00000138640|ENST00000264344|FAM13A;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;ENST00000515155.1_1_4:89671748-89680064:-|nuORF;nc|ENSG00000138640|O94988-1|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-6|FAM13A 4.75600775471527 0.27219989241163056 1 Q 1 8 2.2185 0 0 0.21933 0 0 276.1982381727078 604.2160128229124 880.4142509956203 0 0 0 0 0 0 0 0 0 + Q 0.21933 + + 2 + NaN NaN 107459.4 NaN 3448 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5438 33.843 NaN 95170 35 0 9071.3 0.261 + 3007 EAANYQDTIGR 11 31 619.2944567307617 1236.5743605283233 2 619.2940673828125 MULTI HCD FTMS 0 0 0 5436 57085.62890625 0.4024927086016357 -4 0.11325836181640625 2 Unmodified _EAANYQDTIGR_ ENSG00000026025|ENST00000544301|VIM 14.957161354070239 0.3267601744939039 1 [RD]NYQDT{I|L}{[NV]|[RG]} 10 3 + 44.882 0 0 3.6296 3.6296 83.551 0 0 0 25.01226231188276 7.269987279362624 7.269987279362624 9.164539485499247 0 0 0 0.4247425010840047 0 [RD]NYQDT{I|L}{[NV]|[RG]};[RD]NY[AG]DT{I|L}{[NV]|[RG]};[RD]GGYQDT{I|L}{[NV]|[RG]};[RD]GGY[AG]DT{I|L}{[NV]|[RG]} 3.6296;2.8884;2.8884;2.1502 -;-;-;- 88 + NaN NaN 97590.4 NaN 3449 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5439 33.846 NaN 108510 35 0 20221 0.261 -1 FPDSEPPRM 9 28 546.2450052822049 1090.4754576312098 2 546.2449340820312 MULTI HCD FTMS 0 0 0 5436 41750.984375 0.6190638201059635 -6 0.163238525390625 3 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 19.361941925380144 0.1930734562688509 1 {M(Oxidation (M))|F}RESDPE 7 -1 50.961 0 0 4.6733 0 0 212.07945449043126 0 212.07945449043126 0 40.503895062812276 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}RESDPE 4.6733 - 112 NaN NaN 108809.3 NaN 3450 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5440 33.849 NaN 51035 35 0 4332 0.261 + 3258 EEAEIIRKY 9 38 575.8087661408274 1149.6029793484547 2 575.8090209960938 MULTI HCD FTMS 0 0 0 5436 27159.509765625 0.908359286140378 -1 0.016719818115234375 4 Unmodified _EEAEIIRKY_ ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF 6.2057823575117 0.30397260197431997 1 {I|L}{I|L}{[CP]|[EA]}[HC] 6 7 8.1606 0 0 0.70986 0 0 465.27058608222814 0 465.27058608222814 0 1.170912423450405 0 0 0 0 0 0 0 {I|L}{I|L}{[CP]|[EA]}[HC] 0.70986 - 10 NaN NaN 107628.1 NaN 3451 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5441 33.853 NaN 54950 35 0 5693.5 0.261 + 14611 LFSDLDTFF 9 34 552.7659068832946 1103.5172608333892 2 552.7657470703125 MULTI HCD FTMS 0 0 0 5436 20095.93359375 0.15152592172474785 27 -0.6821746826171875 5 Unmodified _LFSDLDTFF_ REV__ENSG00000197233|ENST00000335302|OR1J2 3.944395688203298 0.32111559684428237 1 Q{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 15.458 0 0 1.4008 0 0 663.3279214733616 0 663.3279214733616 0 15.45757490560675 0 0 0 0.5 0 0 0 Q{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.4008 - 1 NaN NaN 89616.8 NaN 3452 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5442 33.856 NaN 42525 35 0 6576.7 0.261 -1 MGMGRMEM 8 23 487.6822806709349 973.3500084086699 2 487.68212890625 MULTI HCD FTMS 0 0 0 5436 8191.3447265625 0.3667848625333533 14 -0.3798179626464844 6 2 Oxidation (M) _M(Oxidation (M))GM(Oxidation (M))GRMEM_ ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95476.4 NaN 3453 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5443 33.859 NaN 54165 35 0 11343 0.261 + 32525 WGWRISIC 8 23 510.7591821549737 1019.5038113767474 2 510.7590637207031 MULTI HCD FTMS 0 0 0 5436 19069.4453125 0.6303936245995375 -2 0.04999542236328125 7 Unmodified _WGWRISIC_ ENST00000531065.5_1_16:2014195-2014626:-|nuORF 12.531546534597751 0.5015908124873912 1 S{[ES]|[DT]|[{I|L}C]} 3 5 22.447 0 0 2.2018 0 0 698.3715284597289 0 698.3715284597289 0 22.447274948966935 0 0 0 1 0 0.5 0 + S{[ES]|[DT]|[{I|L}C]} 2.2018 + + 9 NaN NaN 88401.8 NaN 3454 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5444 33.863 NaN 44608 35 0 5372.9 0.261 + 3797 EPEEESERHIL 11 29 456.55259995686276 1366.6359704707884 3 456.88690185546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 2.2527281973983926 0.4090409658946738 1 E 1 10 6.9897 0 0 0.51145 0 0 355.1365762817972 879.4338959403494 1234.5704722221467 0 0 0 0 0 0 0 0 0 + E 0.51145 + + 2 + NaN NaN 86170 NaN 3455 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5445 33.866 NaN 52084 35 0 5429 0.261 + 30796 VPSTHYIY 8 33 490.24816063486224 978.4817683365245 2 490.24847412109375 MULTI HCD FTMS 0 0 0 5436 11595.69140625 0.7194695043144583 2 -0.056629180908203125 9 Unmodified _VPSTHYIY_ nc|ENSG00000140538|Q16288-2|NTRK3 5.230669730166228 0.5342319408533849 1 N 1 8 4.6041 0 0 0.47053 0 0 577.5039678988277 283.92051111392817 861.4244790127559 0 0 0 0 0 0 0 0 0 N 0.47053 - 1 + NaN NaN 93755.1 NaN 3456 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5446 33.869 NaN 38355 35 0 6277.5 0.261 -1 QGFMVHCF 8 27 492.7071996911429 983.3998464490858 2 492.7067565917969 MULTI HCD FTMS 0 0 0 5436 6058.212890625 0.043408100533547364 66 -1.7384567260742188 10 Oxidation (M) _QGFM(Oxidation (M))VHCF_ ENST00000418448.1_1_13:57889915-57890026:+|nuORF 0.7936320650641473 0.540814922690045 1 {[QG]|[NA]}D 3 -1 7.4473 0 0 0.7573 0 0 0 680.2697237604124 680.2697237604124 7.447274948966937 0 0 0 0 0 0 0 0 {[QG]|[NA]}D 0.7573 - 2 + NaN NaN 80618.5 NaN 3457 1987 5436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5448 33.875 NaN 208360 35 0 44337 0.327 -1 HSLPQEPVM 9 32 527.2549264269156 1052.4952999206312 2 527.2553100585938 MULTI HCD FTMS 0 0 0 5447 91267.234375 0.24801687656934465 6 -0.14673995971679688 1 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 31.26834338654808 0.10542797264966089 1 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 39.371 0 0 3.7407 3.7407 88.886 0 0 0 4.920299789533409 26.923487412610363 4.920299789533409 39.3707623615773 0 1.9247425010840047 0 0 0 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 3.7407 + + 36 NaN NaN 110344.9 NaN 3458 1988 5447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5449 33.879 NaN 70099 35 0 20161 0.261 -1 IYNGDMEKI 9 27 549.760343699586 1097.5061344659719 2 549.7606811523438 MULTI HCD FTMS 0 0 0 5447 40630.60546875 0.5261663346543007 3 -0.07336044311523438 2 Oxidation (M) _IYNGDM(Oxidation (M))EKI_ BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant;ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28733783-28734191:+|nuORF 26.268140514670165 0.13340543277302316 1 {I|L}YN 3 -1 54.253 0 0 4.9433 0 0 0 704.2941378229124 704.2941378229124 46.80523450795789 0 0 0 0 0.4247425010840047 2 0 0.3807196863200844 {I|L}YN 4.9433 + + 7 + NaN NaN 116350.6 NaN 3459 1988 5447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5450 33.883 NaN 55273 35 0 7238.7 0.261 -1 0 32 523.7718140656035 1045.529075198007 2 523.7725219726562 MULTI HCD FTMS 0 0 0 5447 5004.93359375 0.007668572455420804 18 -0.4596405029296875 3 NaN NaN 1 {M(Oxidation (M))|F}N 2 -1 7.9588 0 0 0.76122 0 0 298.1578116255444 483.23200403385005 781.3898156593945 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 0.76122 - 6 + NaN NaN 92414.9 NaN 3460 1988 5447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5451 33.886 NaN 25377 35 0 6533.6 0.261 + -1 MCCRTCMLF 9 18 627.2331071416546 1252.4516613501091 2 627.2332153320312 MULTI HCD FTMS 0 0 0 5447 17206.314453125 0.18222392194649897 -25 0.6861610412597656 4 2 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))CRTC(Carbamidomethyl (C))M(Oxidation (M))LF_ REV__ENSG00000114374|ENST00000338981|USP9Y;REV__ENSG00000124486|ENST00000378308|USP9X;REV__ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;REV__nc|ENSG00000114374|O00507-2|USP9Y;REV__nc|ENSG00000124486|Q93008-3|USP9X;REV__USP9X-BLVRB|1|fusion;REV__USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant;REV__USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 T 1 -1 6.9897 0 0 0.55808 0 0 557.1745139885842 591.2053927057249 1148.379906694309 0 0 0 0 0 0 0 0 0 T 0.55808 + + 2 + NaN NaN 80873.8 NaN 3461 1988 5447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5452 33.889 NaN 13814 35 0 4370.6 0.261 + -1 TRTMEFLEH 9 11 590.2768553523314 1178.5391577714627 2 590.2786865234375 MULTI HCD FTMS 0 0 0 5447 4394.9345703125 0.1567141861726003 11 -0.29331207275390625 5 Oxidation (M) _TRTM(Oxidation (M))EFLEH_ REV__ENST00000470499.1_1_3:131895005-131895206:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82486.8 NaN 3462 1988 5447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5454 33.895 NaN 117700 35 0 19683 0.327 + 22 AAGVGDMVM 9 37 441.68809129984214 881.3616296664843 2 441.6884765625 MULTI HCD FTMS 0 0 0 5453 92683.578125 0.8749968653961269 2 -0.053333282470703125 1 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 85.35673624503755 0.00464763827098139 1 AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 73.355 0 0 8.3229 8.3229 89.061 0 0 0 1.706962271689747 4.149152774571903 1.706962271689747 4.149152774571903 0 2.6549471895720984 0 0.3494850021680094 0 + + AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.3229;7.8522 +;- + 87 + NaN NaN 118624.8 NaN 3463 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5455 33.899 NaN 139980 35 0 28823 0.261 + 16046 LPSGATLSSL 10 42 473.26627671889094 944.5180005045819 2 473.266357421875 MULTI HCD FTMS 0 0 0 5453 89009.96875 0.4216316947444196 -3 0.0733489990234375 2 Unmodified _LPSGATLSSL_ ENST00000564147.1_1_16:68270758-68271348:-|nuORF 41.8396318013385 0.12944265636084 1 {I|L}PT[{I|L}T]NSS{I|L} 9 4 + 65.256 0 0 6.909 6.909 89.596 0 0 0 57.02947800538006 7.944539621753535 7.944539621753535 9.208187539523749 0 1.610924374808178 1.5228787452803376 0.805462187404089 0 {I|L}PT[{I|L}T]NSS{I|L};{I|L}PT[{I|L}T]GGSS{I|L} 6.909;5.934 -;- 55 + NaN NaN 101021.1 NaN 3464 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5456 33.903 NaN 109730 35 0 20915 0.261 -1 RRCHSQPM 8 34 515.7383451766505 NaN 0 515.7288208007812 PEAK HCD FTMS 0 0 0 5453 2223.619384765625 0.41256724189070365 -1 0.02002716064453125 3 Oxidation (M) _RRCHSQPM(Oxidation (M))_ ENST00000571409.1_3_17:7154762-7155739:-|nuORF 4.75600775471527 0.38822285293237185 1 D 1 -1 4.6041 0 0 0.44723 0 0 390.17522433442883 521.2392061822874 911.4144305167163 0 0 0 0 0 0 0 0 0 D 0.44723 - 5 + NaN NaN 109110.9 NaN 3465 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5457 33.906 NaN 43835 35 0 4466.2 0.261 -1 CLRYGLQM 8 28 500.24104362038014 998.4675343075603 2 500.2406921386719 MULTI HCD FTMS 0 0 0 5453 20683.490234375 0.324408580898041 -13 0.35993194580078125 4 Oxidation (M) _CLRYGLQM(Oxidation (M))_ nc|ENSG00000290292|Q8IX15-3|HOMEZ;nc|ENSG00000290292|Q8IX15|HOMEZ 13.50788311687929 0.4944073034352369 1 Q{M(Oxidation (M))|F} 2 -1 29.821 0 0 2.9866 0 0 705.3636047194728 0 705.3636047194728 0 24.336068845642203 0 0 0 1 0 0 0.4247425010840047 Q{M(Oxidation (M))|F} 2.9866 + + 15 + NaN NaN 79243.3 NaN 3466 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5458 33.909 NaN 56816 35 0 6700.6 0.262 + 20202 NYLFRPICVT 10 37 409.2194639953857 NaN 0 409.2189025878906 PEAK HCD FTMS 0 0 0 5453 12522.5771484375 0.8770002042872417 -2 0.056629180908203125 5 Unmodified _NYLFRPICVT_ REV__ENSG00000179695|ENST00000641202|OR6C2 3.2813086475875832 0.33737594360511275 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.67178 0 0 270.15473502026515 383.2054537408813 653.3601887611464 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.67178 + + 7 + NaN NaN 86229.3 NaN 3467 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5459 33.913 NaN 18370 35 0 5484.7 0.261 -1 KYMEDYHQF 9 12 638.769032035333 1275.523511137466 2 639.2703247070312 MULTI HCD FTMS 0 0 0 5453 4849.2939453125 0.260982062754344 13 -0.35308837890625 6 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 3.2813086475875832 0.32614229037259 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88845 NaN 3468 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5460 33.916 NaN 61666 35 0 9453.1 0.262 + -1 FDSLSMWF 8 45 524.7255400470598 1047.4365271609195 2 524.7252807617188 MULTI HCD FTMS 0 0 0 5453 2505.98095703125 0.12720934966160782 27 -0.6920242309570312 7 Oxidation (M) _FDSLSM(Oxidation (M))WF_ REV__ENSG00000203697|ENST00000366872|CAPN8 2.302733041254933 0.5385759549224092 1 Q 1 -1 11.594 0 0 1.1069 0 0 901.3675859761523 0 901.3675859761523 0 2.129843661361406 0 0 0 0 0 0 0 Q 1.1069 - 9 + NaN NaN 80807.1 NaN 3469 1989 5453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5462 33.922 NaN 322260 35 0 52216 0.326 -1 SSGPVDPMM 9 43 476.6910442976 951.367535662 2 476.6908874511719 MULTI HCD FTMS 0 0 0 5461 107765.203125 0.5109053571714296 14 -0.36635589599609375 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7858 0 0 786.3216352487173 0 786.3216352487173 0 -5.506981269092606 -5.506981269092606 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7858 + + 38 + NaN NaN 132712.6 NaN 3470 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5463 33.926 NaN 68830 35 0 7754.3 0.261 + 32920 YAFQLYNY 8 31 541.2526160524714 1080.4906791717426 2 541.2691040039062 MULTI HCD FTMS 0 0 0 5461 6626.28857421875 0.03008348094308979 13 -0.343048095703125 2 Unmodified _YAFQLYNY_ REV__ENSG00000117385|ENST00000296388|P3H1;REV__ENST00000460031.5_1_1:43220834-43232642:-|nuORF;REV__ENST00000463465.1_1_1:43223527-43225049:-|nuORF;REV__ENST00000495874.5_1_1:43222117-43232675:-|nuORF;REV__nc|ENSG00000117385|Q32P28-2|P3H1;REV__nc|ENSG00000117385|Q32P28-3|P3H1;REV__nc|ENSG00000117385|Q32P28-4|P3H1 5.760428011301431 0.5334459684533844 1 E{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.8014 0 0 786.4019032209 0 786.4019032209 0 4.001743095932682 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.8014 - 18 NaN NaN 110559.5 NaN 3471 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5464 33.929 NaN 74456 35 0 19610 0.261 -1 NANHPDFPM 9 31 529.7217689299252 1057.4289849266504 2 529.7217407226562 MULTI HCD FTMS 0 0 0 5461 26052.888671875 0.6108670679800025 -10 0.2799224853515625 3 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 24.020572477871973 0.15282392193088168 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 -1 33.188 0 0 3.1385 0 0 648.2611820475473 0 648.2611820475473 0 30.713337517843655 0 0 0 1 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.1385 + + 15 + NaN NaN 107109.7 NaN 3472 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5465 33.933 NaN 112600 35 0 15799 0.261 + 26408 STANIDDLK 9 37 488.7504314979062 975.4863100626125 2 488.7502746582031 MULTI HCD FTMS 0 0 0 5461 21479.41796875 0.8184847883360138 2 -0.050060272216796875 4 Unmodified _STANIDDLK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 8.155526934196011 0.2891920862272901 1 {[MG]|[TS]}AN 4 5 12.664 0 0 1.2982 0 0 0 599.3062227838499 599.3062227838499 10.189549981487076 0 0 0 0 0.4247425010840047 0 0 0 + {[MG]|[TS]}AN 1.2982 + + 11 + NaN NaN 117628.5 NaN 3473 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5466 33.936 NaN 47801 35 0 5141.4 0.261 + 9414 HPTVTGESL 9 33 470.74035881337954 939.4661646935591 2 470.7399597167969 MULTI HCD FTMS 0 0 0 5461 24413.0390625 1 0 0 5 Unmodified _HPTVTGESL_ ENSG00000158246|ENST00000289166|TENT5B 10.823927491677226 0.26684000660059787 1 S{I|L} 2 7 25.969 0 0 2.7642 0 0 721.3385487287125 0 721.3385487287125 0 25.969100130080562 0 0 0 0.5 0 0 0 + S{I|L} 2.7642 + + 5 NaN NaN 84346.9 NaN 3474 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5467 33.939 NaN 51459 35 0 6991.1 0.261 + 2129 DFQMRLGSKF 10 31 410.21050520358835 1227.609686210965 3 410.5433349609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _DFQMRLGSKF_ tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F} 1 9 13.979 0 0 1.1387 0 0 1062.5637857976822 0 1062.5637857976822 0 6.9897000433601875 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1387 + + 11 + NaN NaN 97370.9 NaN 3475 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5468 33.943 NaN 16639 35 0 3772.5 0.261 + 24364 RYIHPQQEAF 10 12 644.8255108422948 1287.6364687513894 2 644.8251953125 MULTI HCD FTMS 0 0 0 5461 6694.060546875 0.5419449865654573 4 -0.10002517700195312 7 Unmodified _RYIHPQQEAF_ ENSG00000071894|ENST00000616140|CPSF1 2.735195868890462 0.4608258780945842 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85469.8 NaN 3476 1990 5461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5470 33.948 NaN 261130 35 0 58841 0.327 + 10424 IPAEEENKL 9 44 521.7745587998972 1041.5345646665944 2 521.7741088867188 MULTI HCD FTMS 0 0 0 5469 60239.546875 0.6283687984876111 -2 0.053333282470703125 1 Unmodified _IPAEEENKL_ ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2 16.565877749689598 0.21723083036893404 1 {I|L}PAEEE 6 3 30.539 0 0 2.9321 0 0 0 370.2084139459594 370.2084139459594 23.548888535387178 0 0 0 0 0.5 0 0 0 + {I|L}PAEEE 2.9321 + + 16 + NaN NaN 133321 NaN 3477 1991 5469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5471 33.953 NaN 66773 35 0 5834.5 0.263 + 31138 VTTTASSF 8 33 407.20395605700025 NaN 0 407.20379638671875 PEAK HCD FTMS 0 0 0 5469 25117.837890625 0.8479671239921996 -1 0.026645660400390625 2 Unmodified _VTTTASSF_ ENSG00000170293|ENST00000307526|CMTM8;nc|ENSG00000170293|Q8IZV2-2|CMTM8 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99870.7 NaN 3478 1991 5469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5472 33.956 NaN 48439 35 0 12586 0.261 + 27832 TCGHERLR 8 20 486.24454184827465 NaN 0 486.2615966796875 PEAK HCD FTMS 0 0 0 5469 3821.404296875 0.7857758182725822 2 -0.053356170654296875 3 Unmodified _TCGHERLR_ ENSG00000153558|ENST00000484457|FBXL2;ENST00000422741.5_1_3:33414627-33427097:+|nuORF;ENST00000432809.5_1_3:33339416-33427097:+|nuORF;ENST00000451636.5_1_3:33400471-33427097:+|nuORF;ENST00000464990.1_1_3:33425426-33427097:+|nuORF;nc|ENSG00000153558|Q9UKC9-2|FBXL2 5.230669730166228 0.38822285293237185 1 A 1 8 5.4846 0 0 0.56514 0 0 305.1727251986993 591.2418917291624 896.4146169278617 0 0 0 0 0 0 0 0 0 A 0.56514 - 4 + NaN NaN 85206 NaN 3479 1991 5469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5473 33.959 NaN 19803 35 0 2775.2 0.261 + 11766 KDVRVCETCS 10 19 570.261306997996 1138.508061062792 2 570.2615966796875 MULTI HCD FTMS 0 0 0 5469 12335.8515625 0.834419984894198 10 -0.2698554992675781 4 Unmodified _KDVRVCETCS_ REV__ENSG00000132470|ENST00000200181|ITGB4;REV__ENST00000580542.5_1_17:73720783-73737087:+|nuORF;REV__ITGB4-SAP30BP|1|fusion;REV__ITGB4-SAP30BP|2|fusion;REV__ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant;REV__nc|ENSG00000132470|P16144-2|ITGB4;REV__nc|ENSG00000132470|P16144-3|ITGB4;REV__nc|ENSG00000132470|P16144-4|ITGB4;REV__nc|ENSG00000132470|P16144-5|ITGB4 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89781.4 NaN 3480 1991 5469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5474 33.963 NaN 81393 35 0 14472 0.264 -1 YYLNRTHML 9 39 409.5374630871081 1225.5905598615243 3 409.5376281738281 MULTI HCD FTMS 0 0 0 5469 22704.193359375 0.49150415179694157 -11 0.3065681457519531 5 Oxidation (M) _YYLNRTHM(Oxidation (M))L_ ENSG00000145982|ENST00000274680|FARS2 7.101721422024254 0.29718071671418667 1 YY 2 -1 41.766 0 0 3.4078 0 0 0 896.4414223374024 896.4414223374024 20.305124878302756 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 YY 3.4078 + + 27 + NaN NaN 94350 NaN 3481 1991 5469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5475 33.966 NaN 53654 35 0 6131.1 0.261 -1 QPMQPTPSM 9 29 524.7255400470598 1047.4365271609195 2 524.765380859375 MULTI HCD FTMS 0 0 0 5469 6120.9736328125 0.3107146815865518 29 -0.7451171875 6 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F}N 2 -1 9.464 0 0 0.90353 0 0 300.0759447408007 483.2318485671967 783.3077933079974 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 0.90353 - 4 + NaN NaN 88273.4 NaN 3482 1991 5469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5477 33.972 NaN 154680 35 0 22597 0.327 + -1 RTSEYPMI 8 35 506.74197417886694 1011.4693954245339 2 506.7417907714844 MULTI HCD FTMS 0 0 0 5476 52104.6875 0.7636257050147357 7 -0.19653701782226562 1 Oxidation (M) _RTSEYPM(Oxidation (M))I_ REV__ENSG00000105426|ENST00000262963|PTPRS;REV__ENSG00000153707|ENST00000381196|PTPRD;REV__ENST00000588552.5_1_19:5159112-5286160:-|nuORF;REV__nc|ENSG00000105426|Q13332-2|PTPRS;REV__nc|ENSG00000105426|Q13332-3|PTPRS;REV__nc|ENSG00000105426|Q13332-4|PTPRS;REV__nc|ENSG00000105426|Q13332-5|PTPRS;REV__nc|ENSG00000105426|Q13332-6|PTPRS;REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-3|PTPRD;REV__nc|ENSG00000153707|P23468-4|PTPRD;REV__nc|ENSG00000153707|P23468-5|PTPRD;REV__nc|ENSG00000153707|P23468-6|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD 18.13498045792455 0.4603629008820478 1 P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 6 -1 17.676 0 0 1.7476 0 0 278.13060195136876 0 278.13060195136876 0 13.071968632008439 0 0 0 0 0 0.8494850021680094 0 P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 1.7476 - 16 NaN NaN 109753.3 NaN 3483 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5478 33.976 NaN 111840 35 0 34518 0.261 -1 NADPQAVTM 9 22 481.71612515155437 961.4176973699088 2 481.7160339355469 MULTI HCD FTMS 0 0 0 5476 48698.16796875 0.03384720675756756 71 -1.8764228820800781 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 22.65808497894818 0.16459551161911185 1 AVT{M(Oxidation (M))|F} 4 -1 46.186 0 0 4.8039 0 0 525.2167835919937 0 525.2167835919937 0 31.581531501239297 0 0 0 1.4247425010840047 0 0 0 AVT{M(Oxidation (M))|F} 4.8039 + + 39 NaN NaN 92253.9 NaN 3484 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5479 33.98 NaN 82414 35 0 6515.2 0.261 + 14740 LHSEEASHPL 10 32 560.2728999410213 NaN 0 560.2748413085938 PEAK HCD FTMS 0 0 0 5476 26267.9609375 0.37969987856782533 -28 0.7562789916992188 3 Unmodified _LHSEEASHPL_ REV__ENSG00000164309|ENST00000446378|CMYA5 6.723162845929126 0.3344301934401713 1 T 1 -1 9.2917 0 0 0.83071 0 0 149.1025871099685 865.3583421821426 1014.4609292921111 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.83071 - 4 + NaN NaN 99660.3 NaN 3485 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5480 33.983 NaN 86900 35 0 8903.9 0.261 + 27915 TEIEGTQKL 9 44 509.774434322218 1017.534315711236 2 509.7745056152344 MULTI HCD FTMS 0 0 0 5476 36182.953125 0.9641656691405315 -1 0.02341461181640625 4 Unmodified _TEIEGTQKL_ ENSG00000120899|ENST00000346049|PTK2B;nc|ENSG00000120899|Q14289-2|PTK2B 28.494509381512117 0.11816142465008336 1 E{I|L}[DP] 4 7 31.198 0 0 3.066 0 0 545.3173795313517 0 545.3173795313517 0 14.744237387763093 0 0 0 1.5 0 0 0 E{I|L}[DP] 3.066 - 27 + NaN NaN 107282.4 NaN 3486 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5481 33.986 NaN 90874 35 0 19443 0.261 + 21029 PLQQSQLPL 9 34 512.2953475102288 1022.5761420872576 2 512.2950439453125 MULTI HCD FTMS 0 0 0 5476 32915.39453125 0.7847138233955017 -2 0.050060272216796875 5 Unmodified _PLQQSQLPL_ REV__ENSG00000100109|ENST00000407690|TFIP11 5.731851221503515 0.3075653528928475 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102903.6 NaN 3487 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5482 33.989 NaN 127830 35 0 25812 0.261 + 9332 HPSAHDVIL 9 31 494.7641636755087 987.5137744178174 2 494.7640686035156 MULTI HCD FTMS 0 0 0 5476 47965.96875 0.2567739558898662 -13 0.35330963134765625 6 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 26.88365393820708 0.12808753336095696 1 V{I|L}{I|L} 3 6 31.198 0 0 3.1592 0 0 644.2662180584913 0 644.2662180584913 0 11.505149978319906 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 3.1592 + + 8 NaN NaN 95519.7 NaN 3488 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5483 33.993 NaN 25407 35 0 5967.6 0.261 -1 HPSFLMCLHK 10 20 614.8012066754803 1227.5878604177606 2 614.8009643554688 MULTI HCD FTMS 0 0 0 5476 10044.875 0.28068649589845424 5 -0.13666152954101562 7 Oxidation (M) _HPSFLM(Oxidation (M))CLHK_ ENST00000397501.5_1_8:27316549-27316885:+|nuORF 1.3295316138638542 0.46826628246186464 1 Q 1 -1 3.0989 0 0 0.25244 0 0 831.4742262398294 265.0235689752563 1096.4977952150857 0 0 0 0 0 0 0 0 0 Q 0.25244 - 2 + NaN NaN 93233.3 NaN 3489 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5484 33.996 NaN 18075 35 0 3916.2 0.261 + 12474 KQTEVMEARD 10 16 603.7931537258506 1205.5717545185012 2 603.792236328125 MULTI HCD FTMS 0 0 0 5476 12748.7041015625 0.9664343859378979 -5 0.1333770751953125 8 Unmodified _KQTEVMEARD_ REV__ENSG00000128833|ENST00000261839|MYO5C;REV__ENST00000558902.5_1_15:52548900-52571163:-|nuORF;REV__ENST00000560809.5_1_15:52557394-52562028:-|nuORF;REV__MYO5C|p.K1417Ffs*20|1|0.14|ENSG00000128833|chr15:52211777-52211778|-/TCTCTTTCTCAACAATGTTTGCTAAATAACTGAA|frameshift_variant;REV__nc|ENSG00000128833|Q9NQX4-2|MYO5C 1.1933415558491238 0.46898715808974617 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.3819 0 0 511.74529075072616 543.7299898736936 1055.4752806244198 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.3819 + + 1 + NaN NaN 93081.2 NaN 3490 1992 5476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5486 34.001 NaN 138740 35 0 12882 0.327 + 3008 EAANYQDTIGR 11 33 619.2944567307617 1236.5743605283233 2 619.2941284179688 MULTI HCD FTMS 0 0 0 5485 80823.7734375 0.5698628553902586 2 -0.04004669189453125 1 Unmodified _EAANYQDTIGR_ ENSG00000026025|ENST00000544301|VIM 48.07275321834293 0.08933233718691559 1 {[CP]|[EA]}ANYQDT{I|L}{[NV]|[RG]} 11 0 + 61.018 0 0 4.9344 4.9344 85.288 0 0 0 20.28637538240819 7.367585652254185 7.367585652254185 9.128498242810998 0 0.6747425010840047 0 0.3807196863200844 0.3252574989159953 + + {[CP]|[EA]}ANYQDT{I|L}{[NV]|[RG]};{[CP]|[EA]}ANY[AG]DT{I|L}{[NV]|[RG]};{[CP]|[EA]}AGGYQDT{I|L}{[NV]|[RG]};{[CP]|[EA]}AGGY[AG]DT{I|L}{[NV]|[RG]};[KC][WM]QDT{I|L}{[NV]|[RG]};[KC][WM][AG]DT{I|L}{[NV]|[RG]} 4.9344;4.1962;4.1962;3.4605;3.1678;2.4267 +;-;-;-;-;- + 127 + NaN NaN 98329.5 NaN 3491 1993 5485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5487 34.006 NaN 123460 35 0 26457 0.261 -1 FPDSEPPRM 9 37 546.2450052822049 1090.4754576312098 2 546.2446899414062 MULTI HCD FTMS 0 0 0 5485 67442.1328125 1 0 0 2 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 36.506200033944 0.08138327636155518 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRESDP 8 -1 60.61 0 0 5.5582 0 0 0 144.0441333572367 144.0441333572367 59.64123782136497 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRESDP 5.5582 - 130 NaN NaN 105591.8 NaN 3492 1993 5485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5488 34.009 NaN 457970 35 0 40409 0.261 + 31076 VTESANQLTQR 11 54 623.8232071095631 1245.631861285926 2 623.8231201171875 MULTI HCD FTMS 0 0 0 5485 154207.09375 0.0926675341579383 -6 0.16331863403320312 3 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 55.24861242081279 0.05986536799177808 1 [TA]ADTAAQ{I|L}TQR 12 -1 + 130.2 0 0 10.452 10.452 90.153 0 0 0 79.67035049793172 9.366406790042959 9.366406790042959 1.9988211377887808 0 4.079689690656103 0 1.1694451763165201 0.6382104921644451 [TA]ADTAAQ{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR;[TA]ADTAA[AG]{I|L}TQR;[TA]ADTAAQ{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}TQR;[TA]ADTAA[AG]{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}AASR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}AASR 10.452;10.292;9.7219;9.7219;9.559;9.559;8.9935;8.8286;8.4689;7.7385 -;-;-;-;-;-;-;-;-;- 1265 + NaN NaN 151206.8 NaN 3493 1993 5485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5489 34.013 NaN 27572 35 0 4344.3 0.264 -1 TQRPWMMFLM 10 20 452.8795898142498 NaN 0 452.869873046875 PEAK HCD FTMS 0 0 0 5485 1981.4830322265625 0.8076273859680896 -1 0.029941558837890625 4 Oxidation (M) _TQRPWM(Oxidation (M))MFLM_ SLC39A12|p.L667M|1|0.21|ENSG00000148482|chr10:18042756-18042756|C/A|missense_variant 0.15932191953741626 0.34004793154798674 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.3429 0 0 345.72663460721213 407.9309176080688 753.6575522152809 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.3429 + + 1 + NaN NaN 84290.6 NaN 3494 1993 5485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5490 34.016 NaN 25589 35 0 3657.2 0.261 + -1 QTLVSCMKLT 10 23 570.2932035002306 1138.571854067261 2 570.2936401367188 MULTI HCD FTMS 0 0 0 5485 3936.581298828125 0.39964797093151505 1 -0.020023345947265625 5 Oxidation (M) _QTLVSCM(Oxidation (M))KLT_ REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|38|3|sense 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99309.7 NaN 3495 1993 5485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5492 34.022 NaN 209690 35 0 22556 0.326 -1 0 39 535.2228898803264 1068.4312268274527 2 535.2228393554688 MULTI HCD FTMS 0 0 0 5491 107669.7578125 0.2763145126475621 9 -0.24302291870117188 1 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.8986 0 0 790.3024254131934 0 790.3024254131934 0 22.01667520279372 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 2.8986 - 24 + NaN NaN 119156.8 NaN 3496 1994 5491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5493 34.026 NaN 77116 35 0 16234 0.261 -1 HSLPQEPVM 9 21 527.2549264269156 1052.4952999206312 2 527.2553100585938 MULTI HCD FTMS 0 0 0 5491 30516.79296875 0.08292877204895269 12 -0.3129005432128906 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 20.41453444215458 0.18397929046831515 1 E[VP]{M(Oxidation (M))|F} 4 -1 30.445 0 0 2.8927 0 0 562.28618056465 0 562.28618056465 0 21.49288766643714 0 0 0 1.4247425010840047 0 0 0 E[VP]{M(Oxidation (M))|F} 2.8927 + + 17 NaN NaN 90996.2 NaN 3497 1994 5491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5494 34.029 NaN 244030 35 0 28736 0.262 + 798 ATEQTRTVNLN 11 62 416.2175406793484 1245.6307926382453 3 416.2176208496094 MULTI HCD FTMS 0 0 0 5491 58936.07421875 0.19724552149798105 -3 0.0733795166015625 3 Unmodified _ATEQTRTVNLN_ tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1 18.373094154950223 0.29699704000378496 1 [TA]S[RD]AQ{I|L}T 9 7 66.833 0 0 5.3654 0 0 0 299.1468599908813 299.1468599908813 48.57183872163956 0 0 0 0 2.274227503252014 1.6989700043360187 0.4247425010840047 0 [TA]S[RD]AQ{I|L}T 5.3654 - 223 + NaN NaN 118833.6 NaN 3498 1994 5491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5495 34.033 NaN 18469 35 0 3804.4 0.261 + -1 MMMCVSFMK 9 13 614.7303705657341 NaN 0 614.7303466796875 PEAK HCD FTMS 0 0 0 5491 2662.724853515625 0.21293614095207156 1 -0.020023345947265625 4 Carbamidomethyl (C),4 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))VSFM(Oxidation (M))K_ REV__ENST00000477524.5_1_1:84367884-84378129:-|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78617.4 NaN 3499 1994 5491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5496 34.036 NaN 40926 35 0 7695.2 0.261 + 16648 LWEFFLKQ 8 25 555.8019328665739 1109.5893127999477 2 555.80224609375 MULTI HCD FTMS 0 0 0 5491 13577.61328125 0.5477137996146004 -15 0.4032745361328125 5 Unmodified _LWEFFLKQ_ REV__ENST00000445427.1_1_10:6626067-6626238:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100716.2 NaN 3500 1994 5491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5498 34.042 NaN 195870 35 0 44282 0.327 + 16136 LPTKEASSL 9 48 473.26627671889094 944.5180005045819 2 473.26605224609375 MULTI HCD FTMS 0 0 0 5497 120105.171875 0.5689266930028671 3 -0.09994888305664062 1 Unmodified _LPTKEASSL_ ENSG00000014164|ENST00000262577|ZC3H3 40.23920728925047 0.06424668180817725 1 {I|L}PT 3 6 51.172 0 0 5.4178 0 0 0 630.3101900690061 630.3101900690061 32.487737688117235 0 0 0 0 0.5 1.3979400086720375 0.75 0 + {I|L}PT 5.4178 + + 15 + NaN NaN 105172.8 NaN 3501 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5499 34.046 NaN 84623 35 0 13840 0.261 -1 MPVHAAVQM 9 32 500.24104362038014 998.4675343075603 2 500.2411193847656 MULTI HCD FTMS 0 0 0 5497 49096.21484375 0.7700457323424047 -7 0.1667633056640625 2 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 28.486842064014134 0.11819662193267319 1 VQ{M(Oxidation (M))|F} 3 -1 45.005 0 0 4.5074 0 0 606.2949401686916 0 606.2949401686916 0 45.00508444608478 0 0 0 1.5 0 0 0.3807196863200844 VQ{M(Oxidation (M))|F} 4.5074 + + 51 + NaN NaN 108325 NaN 3502 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5500 34.05 NaN 83953 35 0 15400 0.261 -1 VVDPNDPQM 9 26 515.7290263194249 1029.4434997056496 2 515.7290649414062 MULTI HCD FTMS 0 0 0 5497 30056.814453125 0.7161133173318989 3 -0.09994888305664062 3 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 8.155526934196011 0.2891920862272901 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91337.6 NaN 3503 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5501 34.053 NaN 267080 35 0 39782 0.261 + 19445 NPSEQEPKF 9 61 538.2563378424525 1074.4981227517048 2 538.2557373046875 MULTI HCD FTMS 0 0 0 5497 37723.54296875 1 0 0 4 Unmodified _NPSEQEPKF_ ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276919-202277543:-|nuORF 33.4449034751529 0.0954363425218424 1 EQGTHN 6 7 39.831 0 0 3.7069 0 0 390.22630507636876 0 390.22630507636876 0 20.08909613066571 0 0 0 0.3494850021680094 0 0.4247425010840047 0.3494850021680094 EQGTHN 3.7069 - 285 NaN NaN 117924.8 NaN 3504 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5502 34.056 NaN 54722 35 0 4582.6 0.261 -1 LPDDPAKTTM 10 33 552.7659068832946 1103.5172608333892 2 553.2675170898438 MULTI HCD FTMS 0 0 0 5497 16447.462890625 0.18205913787546518 34 -0.8609733581542969 5 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 4.5288652416199255 0.4513317009562028 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86052.6 NaN 3505 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5503 34.059 NaN 28711 35 0 4509.6 0.262 -1 HMKDSSGNWRE 11 24 454.8670777037044 NaN 0 454.866943359375 PEAK HCD FTMS 0 0 0 5497 9986.7919921875 0.6004033776493345 -18 0.47667694091796875 6 Oxidation (M) _HM(Oxidation (M))KDSSGNWRE_ ENSG00000156795|ENST00000287387|NTAQ1;ENST00000523551.1_1_8:124429070-124460295:+|nuORF;nc|ENSG00000156795|Q96HA8-2|NTAQ1 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99789.6 NaN 3506 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5504 34.063 NaN 57545 35 0 18588 0.261 -1 VCLEGHQVKL 10 19 612.8243974476813 1223.6342419621626 2 612.8231201171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))VC(Carbamidomethyl (C))LEGHQVKL_ ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000529321.1_1_11:7618568-7619057:+|nuORF;ENST00000530189.1_1_11:7618841-7631707:+|nuORF;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;PPFIBP2|p.N154S|1|0.44|ENSG00000166387|chr11:7597648-7597648|A/G|missense_variant 1.1933415558491238 0.46898715808974617 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.32521 0 0 899.3071678428252 174.23826013736564 1073.5454279801909 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.32521 - 1 + NaN NaN 88592.3 NaN 3507 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5505 34.066 NaN 16096 35 0 6730.7 0.261 -1 KYMEDYHQF 9 12 638.769032035333 1275.523511137466 2 638.7693481445312 MULTI HCD FTMS 0 0 0 5497 7120.34375 0.2916978651964271 19 -0.4788093566894531 8 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78157.4 NaN 3508 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5506 34.069 NaN 21325 35 0 5966.2 0.261 + 8213 GRDYELYKY 9 16 603.7931537258506 1205.5717545185012 2 603.7945556640625 MULTI HCD FTMS 0 0 0 5497 11486.88671875 0.8707804514039005 -2 0.04004669189453125 9 Unmodified _GRDYELYKY_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 1.844237919475145 0.33703635659052655 1 {I|L} 1 8 6.9897 0 0 0.57978 0 0 620.257680887445 469.20334802799067 1089.4610289154357 0 0 0 0 0 0 0 0 0 + {I|L} 0.57978 + + 1 + NaN NaN 89480.8 NaN 3509 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5507 34.073 NaN 15183 35 0 3499.7 0.261 + -1 YRNFEDCE 8 14 566.7218021732956 1131.429051413391 2 566.7208251953125 MULTI HCD FTMS 0 0 0 5497 2481.942138671875 0.14796376306271303 16 -0.3957710266113281 10 Carbamidomethyl (C) _YRNFEDC(Carbamidomethyl (C))E_ REV__ENST00000477541.1_1_6:32918038-32918221:-|nuORF 0 0.5419923896992614 1 E 1 -1 3.0989 0 0 0.2739 0 0 852.3766354971787 146.98076807193596 999.3574035691146 0 0 0 0 0 0 0 0 0 E 0.2739 + + 1 + NaN NaN 83227.3 NaN 3510 1995 5497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5509 34.078 NaN 85036 35 0 11145 0.327 + 23 AAGVGDMVM 9 37 441.68809129984214 881.3616296664843 2 441.68841552734375 MULTI HCD FTMS 0 0 0 5508 42320.1171875 0.39953107801166104 9 -0.226226806640625 1 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 50.855029805455786 0.030374663808198754 1 [QA]V[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 47.229 0 0 5.3586 5.3586 85.364 0 0 0 4.6040937697618745 38.27623146104628 4.6040937697618745 7.629106573952448 0 1.8807196863200843 0 0.3807196863200844 0 [QA]V[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGV[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.3586;4.493 -;+ + 72 NaN NaN 103092.1 NaN 3511 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5510 34.083 NaN 36741 35 0 11579 0.261 -1 CFWEECPPE 9 20 627.2331071416546 1252.4516613501091 2 627.233154296875 MULTI HCD FTMS 0 0 0 5508 22817.3359375 0.24164759130895097 -17 0.46002197265625 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99929 NaN 3512 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5511 34.086 NaN 62992 35 0 11440 0.262 -1 HSLPQEPVM 9 28 527.2549264269156 1052.4952999206312 2 527.2549438476562 MULTI HCD FTMS 0 0 0 5508 18867.939453125 0.05127324655457515 14 -0.3291168212890625 3 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 13.042465956692817 0.2476723265019929 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.0893 0 0 887.4491706255125 0 887.4491706255125 0 6.532125137753438 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0893 + + 5 + NaN NaN 94975.5 NaN 3513 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5512 34.09 NaN 73119 35 0 12530 0.261 -1 HSLPQEPVM 9 25 527.2549264269156 1052.4952999206312 2 527.7566528320312 MULTI HCD FTMS 0 0 0 5508 10117.982421875 0.04989014821333339 15 -0.35904693603515625 4 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 16.149105407346934 0.22083165093524068 1 E[VP]{M(Oxidation (M))|F} 4 -1 25.005 0 0 2.3758 0 0 562.2870960919937 0 562.2870960919937 0 25.00508444608478 0 0 0 0.8807196863200843 0 0 0 E[VP]{M(Oxidation (M))|F} 2.3758 + + 19 NaN NaN 96747.2 NaN 3514 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5513 34.093 NaN 57493 35 0 11115 0.261 -1 NANHPDFPM 9 31 529.7217689299252 1057.4289849266504 2 529.7216796875 MULTI HCD FTMS 0 0 0 5508 20338.287109375 0.4768757112009432 -4 0.10671234130859375 5 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 6.723162845929126 0.3000504726104499 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 81817 NaN 3515 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5514 34.096 NaN 42801 35 0 4865.7 0.261 + -1 CCCRPAQCEK 10 29 456.84824895191065 1367.522917455932 3 456.88726806640625 MULTI HCD FTMS 0 0 0 5508 2000.0421142578125 0.26482108596082127 -6 0.15677261352539062 6 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))RPAQC(Carbamidomethyl (C))EK_ REV__ENST00000589225.5_1_17:76795804-76798500:-|nuORF 0.12286491777506015 0.4746533611140575 1 EE 2 -1 10.969 0 0 0.80211 0 0 226.98186427952265 879.4334247771366 1106.4152890566593 0 0 0 0 0 0 0 0 0 EE 0.80211 - 4 + NaN NaN 97214.9 NaN 3516 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5515 34.099 NaN 21864 35 0 3669 0.261 -1 CEIFPCPVL 9 15 567.7702453747988 1133.5259378163976 2 567.7704467773438 MULTI HCD FTMS 0 0 0 5508 5355.12939453125 0.7094795856112718 1 -0.029949188232421875 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))EIFPC(Carbamidomethyl (C))PVL_ ENSG00000049323|ENST00000404816|LTBP1;LTBP1|p.Q1575Hfs*14|1|0.26|ENSG00000049323|chr2:33389196-33389215|AGCTGTGTAACATCCCCGTG/-|frameshift_variant;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86456.2 NaN 3517 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5516 34.103 NaN 17798 35 0 3922.9 0.261 -1 MLICVFMKI 9 17 585.8073545276269 1169.6001561220537 2 585.805908203125 MULTI HCD FTMS 0 0 0 5508 7093 0.17640935962266166 -8 0.20348739624023438 8 Carbamidomethyl (C),Oxidation (M) _MLIC(Carbamidomethyl (C))VFM(Oxidation (M))KI_ ENST00000287474.9_1_1:100195237-100203667:-|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83508.4 NaN 3518 1996 5508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5518 34.108 NaN 177200 35 0 15266 0.327 + 2857 DYMKTTSNF 9 57 561.7424083412724 1121.4702637493447 2 561.7422485351562 MULTI HCD FTMS 0 0 0 5517 101898.9140625 0.7213261344477493 -1 0.029949188232421875 1 Oxidation (M) _DYM(Oxidation (M))KTTSNF_ ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-3|NEMF;nc|ENSG00000165525|O60524-4|NEMF;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant 100.7086487251713 0.004245359191255521 1 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTSN{M(Oxidation (M))|F} 9 0 + 98.012 0 0 8.7396 8.7396 92.618 0 0 0 27.217714524193113 88.54811556341673 27.217714524193113 9.208187539523749 0 2.9489700043360187 2 1.5669015600442577 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTSN{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTSGG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTA[YN];{[{M(Oxidation (M))|F}D]|MM}[TP]{[HG]|PP}TSN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[TP]{[HG]|PP}TA[YN] 8.7396;7.9185;6.1213;3.5009;0.88263 +;-;-;-;- + 352 NaN NaN 121619.2 NaN 3519 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5519 34.113 NaN 277570 35 0 51664 0.261 + 10425 IPAEEENKL 9 52 521.7745587998972 1041.5345646665944 2 521.7742309570312 MULTI HCD FTMS 0 0 0 5517 73107.9140625 0.7626008909846843 4 -0.10977935791015625 2 Unmodified _IPAEEENKL_ ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2 22.65808497894818 0.16459551161911185 1 {I|L}PA 3 6 23.812 0 0 2.2863 0 0 0 757.3385714166624 757.3385714166624 11.773174902439576 0 0 0 0 0 0 0 0 + {I|L}PA 2.2863 + + 42 + NaN NaN 120422 NaN 3520 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5520 34.116 NaN 564230 35 0 56798 0.261 + 24116 RYASINTHL 9 72 537.7882719117603 1073.5619908903204 2 537.7886962890625 MULTI HCD FTMS 0 0 0 5517 129856.84375 0.7469190896774237 -2 0.06667327880859375 3 Unmodified _RYASINTHL_ ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 29.84058131909904 0.11198220037953927 1 NTH{I|L} 4 5 45.918 0 0 4.2771 0 0 590.3185902326187 0 590.3185902326187 0 12.147102224488926 0 0 0 0.6237125054200234 0 0.7742275032520141 0 + NTH{I|L} 4.2771 + + 267 NaN NaN 167795 NaN 3521 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5521 34.119 NaN 189290 35 0 38314 0.261 -1 SSGPVDPMM 9 33 476.6910442976 951.367535662 2 476.6910095214844 MULTI HCD FTMS 0 0 0 5517 60916.4609375 0.2887995877184301 21 -0.5317916870117188 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 16.942295170755138 0.21397866736869717 1 [Q{I|L}]{[DA]|[EG]}DDE{M(Oxidation (M))|F} 8 -1 [Q{I|L}]{[DA]|[EG]}DD + + 16.454 16.898 2.5709 1.7295 1.7295 58.866 0 0 0 0 -2.9710624853235146 -2.9710624853235146 0 0 0 0 0 0 [Q{I|L}]{[DA]|[EG]}DDE{M(Oxidation (M))|F} 1.7295 - 17 + NaN NaN 110810.7 NaN 3522 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5522 34.123 NaN 91538 35 0 10551 0.261 -1 HVTQEDFEM 9 46 576.2373454770075 1150.4601380208148 2 576.2376708984375 MULTI HCD FTMS 0 0 0 5517 34952.7578125 0.24727827986248221 -10 0.2700386047363281 5 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 28.494509381512117 0.11816142465008336 1 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 -1 52.959 0 0 4.6033 0 0 465.23140151191564 0 465.23140151191564 0 48.979400086720375 0 0 0 1.4247425010840047 0 0.4247425010840047 0 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.6033 + + 47 NaN NaN 101082.3 NaN 3523 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5523 34.126 NaN 29161 35 0 5873 0.261 + -1 CLMSQEQQKM 10 24 629.2666899957953 1256.5188270583906 2 629.7691650390625 MULTI HCD FTMS 0 0 0 5517 9989.736328125 0.7029493666371569 1 -0.033275604248046875 6 2 Oxidation (M) _CLM(Oxidation (M))SQEQQKM(Oxidation (M))_ REV__ENST00000482369.1_1_7:89845646-89845769:+|nuORF 2.735195868890462 0.4608258780945842 1 QQ{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.4829 0 0 835.3212757794937 0 835.3212757794937 0 31.197887582883936 0 0 0 0.5 0 0 0 QQ{M(Oxidation (M))|F} 2.4829 - 4 NaN NaN 90213.1 NaN 3524 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5524 34.129 NaN 20115 35 0 4443.8 0.261 -1 HKQHFLPTCT 10 13 634.8141752755772 1267.6137976179543 2 634.8143920898438 MULTI HCD FTMS 0 0 0 5517 19723.384765625 0.9957417785314643 -2 0.06667327880859375 7 Carbamidomethyl (C) _HKQHFLPTC(Carbamidomethyl (C))T_ ENST00000504490.2_1_4:113279997-113280900:+|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90595.4 NaN 3525 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5525 34.133 NaN 28276 35 0 4678.2 0.262 + -1 FSDREAPLM 9 19 541.2526160524714 1080.4906791717426 2 541.268798828125 MULTI HCD FTMS 0 0 0 5517 3535.633056640625 0.0160518438775883 19 -0.47861480712890625 8 Oxidation (M) _FSDREAPLM(Oxidation (M))_ REV__ENSG00000139330|ENST00000266719|KERA 3.5964929083625545 0.32375295897743744 1 {I|L}{M(Oxidation (M))|F} 2 -1 18.583 0 0 1.7199 0 0 802.3615589826187 0 802.3615589826187 0 14.604093769761874 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7199 + + 2 NaN NaN 105506.2 NaN 3526 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5526 34.136 NaN 27105 35 0 4379.9 0.261 -1 KYMETIEKL 9 15 585.8073545276269 1169.6001561220537 2 585.807373046875 MULTI HCD FTMS 0 0 0 5517 24545.0234375 0.6104570515342728 -7 0.1867218017578125 9 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion;PPP1R21-GTF2A1L|3|fusion 2.9952420565917617 0.3283108881486655 1 E 1 -1 6.9897 0 0 0.59761 0 0 259.18993881403475 778.3498018854124 1037.539740699447 0 0 0 0 0 0 0 0 0 E 0.59761 + + 1 + NaN NaN 82957.8 NaN 3527 1997 5517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5528 34.141 NaN 604380 35 0 98071 0.327 + 24928 RYSSMAASF 9 51 518.2319310808084 1034.4493092284167 2 518.23193359375 MULTI HCD FTMS 0 0 0 5527 351887.71875 1 0 0 1 Oxidation (M) _RYSSM(Oxidation (M))AASF_ ENSG00000162366|ENST00000294338|PDZK1IP1 61.60191391372663 0.015340508911304802 1 TSAA[MD]AAS{M(Oxidation (M))|F} 10 5 68.933 0 0 6.6637 0 0 64.01560576638015 0 64.01560576638015 0 52.735097166722156 0 0 0 0 0 2.2302046884880937 0 TSAA[MD]AAS{M(Oxidation (M))|F} 6.6637 - 383 + NaN NaN 186364.4 NaN 3528 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5529 34.146 NaN 337440 35 0 65988 0.261 + 9333 HPSAHDVIL 9 30 494.7641636755087 987.5137744178174 2 494.76422119140625 MULTI HCD FTMS 0 0 0 5527 154340.703125 0.8262247991442826 -7 0.19335174560546875 2 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 34.10243960390752 0.09241788333544565 1 V{I|L}{I|L} 3 6 31.198 0 0 3.1592 0 0 644.2665777272931 0 644.2665777272931 0 12.385606273598313 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 3.1592 + + 11 NaN NaN 135781.6 NaN 3529 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5530 34.149 NaN 172690 35 0 15988 0.261 + 25075 SADMSHVAL 9 48 473.7186701406204 945.4227873480409 2 473.71844482421875 MULTI HCD FTMS 0 0 0 5527 109943.0546875 0.6873379425759921 -7 0.19335174560546875 3 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 49.93300154707207 0.03166451819912738 1 {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 9 0 + 50.812 0 0 5.3745 5.3745 91.727 0 0 0 5.6424927368725974 45.32760017977509 5.6424927368725974 50.81215024481537 0 2.3494850021680094 0 0.3494850021680094 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 5.3745 + + 54 NaN NaN 118568.2 NaN 3530 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5531 34.153 NaN 121640 35 0 32973 0.261 -1 NADPQAVTM 9 28 481.71612515155437 961.4176973699088 2 481.7160949707031 MULTI HCD FTMS 0 0 0 5527 63344.5 0.044027003024643185 77 -1.9985542297363281 4 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 1 AVT{M(Oxidation (M))|F} 4 -1 48.928 0 0 5.0891 0 0 525.2179432599625 0 525.2179432599625 0 48.92790030352131 0 0 0 1.8494850021680094 0 0 0 AVT{M(Oxidation (M))|F} 5.0891 + + 46 NaN NaN 104520.8 NaN 3531 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5532 34.156 NaN 137670 35 0 20997 0.261 + -1 RTSEYPMI 8 35 506.74197417886694 1011.4693954245339 2 506.74212646484375 MULTI HCD FTMS 0 0 0 5527 37709.0234375 0.5526485425688069 13 -0.2958221435546875 5 Oxidation (M) _RTSEYPM(Oxidation (M))I_ REV__ENSG00000105426|ENST00000262963|PTPRS;REV__ENSG00000153707|ENST00000381196|PTPRD;REV__ENST00000588552.5_1_19:5159112-5286160:-|nuORF;REV__nc|ENSG00000105426|Q13332-2|PTPRS;REV__nc|ENSG00000105426|Q13332-3|PTPRS;REV__nc|ENSG00000105426|Q13332-4|PTPRS;REV__nc|ENSG00000105426|Q13332-5|PTPRS;REV__nc|ENSG00000105426|Q13332-6|PTPRS;REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-3|PTPRD;REV__nc|ENSG00000153707|P23468-4|PTPRD;REV__nc|ENSG00000153707|P23468-5|PTPRD;REV__nc|ENSG00000153707|P23468-6|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD 12.531546534597751 0.5015908124873912 1 {I|L} 1 -1 1.1092 0 0 0.10967 0 0 617.349718766134 278.0222262018188 895.3719449679527 0 0 0 0 0 0 0 0 0 {I|L} 0.10967 + + 3 + NaN NaN 117321.9 NaN 3532 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5533 34.159 NaN 35888 35 0 4937 0.261 -1 0 21 512.2953475102288 1022.5761420872576 2 512.29541015625 MULTI HCD FTMS 0 0 0 5527 8682.517578125 0.20699407260516214 4 -0.10640335083007812 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96769.2 NaN 3533 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5534 34.163 NaN 28365 35 0 4666.3 0.261 + -1 QPYCEWFDL 9 27 629.2666899957953 1256.5188270583906 2 629.2661743164062 MULTI HCD FTMS 0 0 0 5527 15438.1396484375 0.713391851785265 -1 0.033275604248046875 7 Carbamidomethyl (C) _QPYC(Carbamidomethyl (C))EWFDL_ REV__ENST00000367178.7_2_6:155153267-155153360:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 93079.5 NaN 3534 1998 5527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5536 34.168 NaN 2538500 35 0 225650 0.327 + 31077 VTESANQLTQR 11 99 623.8232071095631 1245.631861285926 2 623.8233032226562 MULTI HCD FTMS 0 0 0 5535 1664089.75 1 0 0 1 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 107.5634045930896 0.020335030202666193 1 [TA]ADTAAQ{I|L}TQR 12 -1 [TA] + + 149.53 2.8432 1.6522 12.004 12.004 69.692 0 0 0 0 66.10046738726537 0 0 0 4.079689690656103 0 2.5372417021870954 1.948104871308642 [TA]ADTAAQ{I|L}TQR 12.004 - 42595 + NaN NaN 464098.9 NaN 3535 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5537 34.172 NaN 710430 35 0 71332 0.264 + 31081 VTESANQLTQR 11 78 416.2175406793484 1245.6307926382453 3 416.2176513671875 MULTI HCD FTMS 0 0 0 5535 288127.25 0.9642958143613274 2 -0.04990386962890625 2 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 37.771325159832564 0.15130342846161757 1 [TA]ADTAAQ{I|L}TQR 12 -1 + 89.29 0 0 7.1683 7.1683 89.204 0 0 0 14.0721512964151 75.13350624290682 14.0721512964151 9.098233696509112 0 2.941962823435958 1.5228787452803376 1.4163865622122673 0 [TA]ADTAAQ{I|L}TQR;[TA]ADTAA[AG]{I|L}TQR;[TA]ADTAAQ{I|L}{[NV]|[RG]}[TA];{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT}AAQ{I|L}TQR;[TA]ADTAA[AG]{I|L}{[NV]|[RG]}[TA];{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}TQR;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT}AA[AG]{I|L}TQR;[TA]ADTV[NG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}{[NV]|[RG]}[TA] 7.1683;6.4379;5.7205;5.4968;5.0403;4.9922;4.764;4.3075;4.087;4.0467 -;-;-;-;-;-;-;-;-;- 669 NaN NaN 187820.3 NaN 3536 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5538 34.176 NaN 128130 35 0 27740 0.261 -1 FPDSEPPRM 9 39 546.2450052822049 1090.4754576312098 2 546.244873046875 MULTI HCD FTMS 0 0 0 5535 59791.0390625 0.8865532059718325 6 -0.13640213012695312 3 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 36.506200033944 0.08138327636155518 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRV[EC]PE 9 -1 + 65.864 0 0 6.0399 6.0399 91.003 0 0 0 12.64445509211555 37.447274948966935 12.64445509211555 19.731975075880328 0 1 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRV[EC]PE;[DP]{M(Oxidation (M))|F}RV[EC]PE 6.0399;4.2304 -;- 150 NaN NaN 107233.9 NaN 3537 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5539 34.179 NaN 44780 35 0 5267.2 0.261 -1 NEEKPVQMM 9 30 569.2475044764498 NaN 0 569.2623291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _NEEKPVQM(Oxidation (M))M(Oxidation (M))_ ENSG00000124570|ENST00000380539|SERPINB6 3.5964929083625545 0.27781873954207675 1 SEEV 4 -1 15.918 0 0 1.4006 0 0 243.0561505137901 446.2141512506469 689.270301764437 0 0 0 0 0 0 0 0 0 SEEV 1.4006 - 17 + NaN NaN 101031.3 NaN 3538 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5540 34.183 NaN 54573 35 0 7563.4 0.261 -1 IPCRAVTCT 9 28 510.75148357910285 1019.4884142250057 2 510.737060546875 MULTI HCD FTMS 0 0 0 5535 9651.828125 0.6535073079826308 3 -0.079803466796875 5 Carbamidomethyl (C) _IPCRAVTC(Carbamidomethyl (C))T_ ENSG00000078043|ENST00000585916|PIAS2;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;nc|ENSG00000078043|O75928-3|PIAS2 7.910154910731844 0.2910521888787154 1 VN[{M(Oxidation (M))|F}T] 4 -1 8.6721 0 0 0.85064 0 0 540.2545033185562 0 540.2545033185562 0 3.1875876262441256 0 0 0 0 0 0 0 VN[{M(Oxidation (M))|F}T] 0.85064 - 9 NaN NaN 89732.5 NaN 3539 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5541 34.186 NaN 71589 35 0 11632 0.261 -1 HSLPQEPVM 9 29 527.2549264269156 1052.4952999206312 2 527.2560424804688 MULTI HCD FTMS 0 0 0 5535 22431.533203125 0.06095724100548116 17 -0.41873931884765625 6 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 11.494710602746466 0.2610445893512368 1 {[ET]|[MV]}ME 4 -1 18.812 0 0 1.7874 0 0 0 559.2655733697874 559.2655733697874 18.812281309285623 0 0 0 0 0.5 0 0 0 {[ET]|[MV]}ME 1.7874 - 11 + NaN NaN 90526.5 NaN 3540 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5542 34.189 NaN 21369 35 0 3636.7 0.261 + 3009 EAANYQDTIGR 11 21 619.2944567307617 1236.5743605283233 2 619.2943115234375 MULTI HCD FTMS 0 0 0 5535 11734.021484375 0.0827328730632378 8 -0.17631149291992188 7 Unmodified _EAANYQDTIGR_ ENSG00000026025|ENST00000544301|VIM 3.876331618118854 0.4019203928379901 1 YQ 2 9 7.4743 0 0 0.60443 0 0 385.16464480742326 557.2728975885374 942.4375423959607 0 0 0 0 0 0 0 0 0 + YQ 0.60443 + + 5 + NaN NaN 88968 NaN 3541 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5543 34.193 NaN 53879 35 0 7405.6 0.261 -1 LPDDPAKTTM 10 22 552.7659068832946 1103.5172608333892 2 553.26708984375 MULTI HCD FTMS 0 0 0 5535 21614.8203125 0.23925729929263923 38 -0.9670333862304688 8 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 3.2813086475875832 0.45793521633868084 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4032 0 0 938.4708111037002 0 938.4708111037002 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4032 + + 3 + NaN NaN 100586.8 NaN 3542 1999 5535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5545 34.198 NaN 85418 35 0 12599 0.327 + 18436 MPVHAAVQM 9 30 500.24104362038014 998.4675343075603 2 500.240966796875 MULTI HCD FTMS 0 0 0 5544 57643.64453125 0.904107223117269 -2 0.0565185546875 1 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 50.855029805455786 0.030374663808198754 1 AVQ{M(Oxidation (M))|F} 4 5 46.938 0 0 4.701 0 0 535.2557240216812 0 535.2557240216812 0 45.96910013008056 0 0 0 1.5 0 0 0 + AVQ{M(Oxidation (M))|F} 4.701 + + 50 NaN NaN 88632 NaN 3543 2000 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5546 34.202 NaN 39069 35 0 6432.6 0.261 -1 RSMVFKDVL 9 24 555.8019328665739 1109.5893127999477 2 555.802490234375 MULTI HCD FTMS 0 0 0 5544 14002.5947265625 0.5648573282566524 -9 0.24987030029296875 2 Oxidation (M) _RSM(Oxidation (M))VFKDVL_ ENSG00000101076|ENST00000316673|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235-2|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235|HNF4A 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82529.5 NaN 3544 2000 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5547 34.206 NaN 69446 35 0 6508.6 0.261 + 3495 EHFVEDVT 8 32 488.2262035481684 NaN 0 488.2422180175781 PEAK HCD FTMS 0 0 0 5544 4968.99365234375 0.5320585085085975 -8 0.2264556884765625 3 Unmodified _EHFVEDVT_ ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3 5.230669730166228 0.38822285293237185 1 VT 2 6 9.464 0 0 0.97122 0 0 200.01435695217043 571.2824190729124 771.2967760250829 0 0 0 0 0 0 0 0 0 + VT 0.97122 + + 5 + NaN NaN 100642.1 NaN 3545 2000 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5548 34.209 NaN 31521 35 0 4297.2 0.261 + -1 YEDYTYMV 8 23 550.2176391180701 NaN 0 550.2182006835938 PEAK HCD FTMS 0 0 0 5544 9063.591796875 0.4522578494805996 -54 1.4263916015625 4 Oxidation (M) _YEDYTYM(Oxidation (M))V_ REV__ENSG00000123500|ENST00000651968|COL10A1;REV__ENSG00000144810|ENST00000652472|COL8A1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100945.3 NaN 3546 2000 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5549 34.213 NaN 14819 35 0 3645.3 0.261 + 828 AVRRQLYCR 9 15 582.823974609375 NaN 0 582.823974609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _AVRRQLYCR_ REV__ENST00000258200.7_1_16:67195789-67196759:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90428.6 NaN 3547 2000 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5551 34.218 NaN 511380 35 0 53836 0.327 + 24117 RYASINTHL 9 66 537.7882719117603 1073.5619908903204 2 537.7882080078125 MULTI HCD FTMS 0 0 0 5550 141891.21875 0.8161391951432686 2 -0.04654693603515625 1 Unmodified _RYASINTHL_ ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 20.41453444215458 0.18397929046831515 1 KNTH{I|L} 5 5 48.443 0 0 4.5124 0 0 462.22776992011876 0 462.22776992011876 0 26.285990926982517 0 0 0 0.7742275032520141 0 0.4247425010840047 0 KNTH{I|L} 4.5124 - 198 NaN NaN 160731.4 NaN 3548 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5552 34.222 NaN 81004 35 0 25140 0.261 + 3198 EDDEDHFPYS 10 26 627.2331071416546 1252.4516613501091 2 627.2332153320312 MULTI HCD FTMS 0 0 0 5550 50298.08984375 0.5326832322351785 -12 0.32318878173828125 2 Unmodified _EDDEDHFPYS_ ENSG00000130675|ENST00000252971|MNX1;nc|ENSG00000130675|P50219-2|MNX1 1.6526216038709556 0.46655611578153744 1 S 1 9 6.9897 0 0 0.55808 0 0 720.2102195549904 442.1876619928344 1162.397881547825 0 0 0 0 0 0 0 0 0 + S 0.55808 + + 4 + NaN NaN 109813.8 NaN 3549 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5553 34.226 NaN 80635 35 0 17885 0.262 -1 NANHPDFPM 9 25 529.7217689299252 1057.4289849266504 2 529.7218017578125 MULTI HCD FTMS 0 0 0 5550 30123.26171875 0.7063058839994167 1 -0.02989959716796875 3 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 -1 24.041 0 0 2.2735 0 0 648.2611210123911 0 648.2611210123911 0 24.041068762088997 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 2.2735 + + 26 + NaN NaN 87206.6 NaN 3550 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5554 34.229 NaN 69125 35 0 16824 0.261 -1 NANHPDFPM 9 29 529.7217689299252 1057.4289849266504 2 530.2233276367188 MULTI HCD FTMS 0 0 0 5550 15163.7314453125 0.7377288610506195 2 -0.04654693603515625 4 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 21.536976647645854 0.1742816388551942 1 H{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4 -1 44.993 0 0 4.2549 0 0 511.19529921699376 0 511.19529921699376 0 42.51857202580155 0 0 0 1.305462187404089 0 0 0 H{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4.2549 - 26 NaN NaN 90676.2 NaN 3551 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5555 34.233 NaN 73961 35 0 8625.9 0.261 + 31147 VTVTNKNIS 9 28 488.27761129932986 NaN 0 488.27740478515625 PEAK HCD FTMS 0 0 0 5550 8806.392578125 0.5754257076920976 1 -0.02989959716796875 5 Unmodified _VTVTNKNIS_ REV__ENSG00000141446|ENST00000269214|ESCO1;REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 16.149105407346934 0.21324626030841579 1 VT 2 -1 18.469 0 0 1.8952 0 0 200.12008810859987 571.2897432916624 771.4098314002622 0 0 0 0 0 0.75 0 0 0 VT 1.8952 + + 9 + NaN NaN 94758 NaN 3552 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5556 34.236 NaN 60156 35 0 11550 0.261 -1 VVDPNDPQM 9 22 515.7290263194249 1029.4434997056496 2 515.7296142578125 MULTI HCD FTMS 0 0 0 5550 14803.625 0.3527011494787745 9 -0.18938827514648438 6 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 8.155526934196011 0.2891920862272901 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85643 NaN 3553 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5557 34.239 NaN 30137 35 0 7373.7 0.261 + 19109 NFFFYKDT 8 13 541.2526160524714 1080.4906791717426 2 541.26904296875 MULTI HCD FTMS 0 0 0 5550 4508.49560546875 0.020468659055512737 23 -0.5483016967773438 7 Unmodified _NFFFYKDT_ MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|23|1|anti-sense 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81775.5 NaN 3554 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5558 34.242 NaN 45312 35 0 9154.7 0.261 + 25411 SEQKRLPPA 9 28 513.2905760202501 1024.5665991073001 2 513.2904052734375 MULTI HCD FTMS 0 0 0 5550 9501.1015625 0.0426170044560444 22 -0.5283889770507812 8 Unmodified _SEQKRLPPA_ ENST00000438017.5_1_3:42695550-42695823:-|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91010.7 NaN 3555 2001 5550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5560 34.248 NaN 413800 35 0 40591 0.327 -1 NIMTQNVER 9 82 560.7762397627264 NaN 0 560.7907104492188 PEAK HCD FTMS 0 0 0 5559 16432.515625 0.593508772041208 5 -0.09650802612304688 1 Oxidation (M) _NIM(Oxidation (M))TQNVER_ ENSG00000118640|ENST00000263864|VAMP8 13.90604991867851 0.22786006501039813 1 AN[KP]SDA 7 -1 31.546 0 0 2.8177 0 0 227.09777500882586 206.09429346256096 433.19206847138685 0 0 0 0 0 0 0 1.086696871556164 0.6989700043360187 AN[KP]SDA 2.8177 - 695 + NaN NaN 150653.9 NaN 3556 2002 5559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5561 34.252 NaN 64908 35 0 7058.7 0.263 -1 AAGVGDMVM 9 35 441.68809129984214 881.3616296664843 2 441.6883544921875 MULTI HCD FTMS 0 0 0 5559 34279.1328125 0.3236186427652015 15 -0.3588066101074219 2 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 36.04419817259434 0.08350412372117409 1 GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 -1 41.013 0 0 4.6534 0 0 298.1642978946347 0 298.1642978946347 0 37.034021960761265 0 0 0 1.305462187404089 0 0 0 GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.6534 + + 35 + NaN NaN 90748.1 NaN 3557 2002 5559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5562 34.256 NaN 72721 35 0 12891 0.261 -1 NANHPDFPM 9 32 529.7217689299252 1057.4289849266504 2 529.7216796875 MULTI HCD FTMS 0 0 0 5559 28588.875 0.6703288248780563 2 -0.03995513916015625 3 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 18.1463463914782 0.20357593197100715 1 {M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 18.2 0 0 1.7211 0 0 648.2636234537973 0 648.2636234537973 0 18.199849938126892 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.7211 + + 19 + NaN NaN 84881 NaN 3558 2002 5559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5563 34.259 NaN 40073 35 0 9081.2 0.261 + 26600 SVVQAGRAAL 10 28 486.2851315352456 970.5557101372913 2 486.2851867675781 MULTI HCD FTMS 0 0 0 5559 16333.8125 1 0 0 4 Unmodified _SVVQAGRAAL_ REV__ENSG00000113205|ENST00000231130|PCDHB3;REV__PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant 5.731851221503515 0.44496410492002586 1 VQV[PA] 5 -1 25.713 0 0 2.6493 0 0 458.2599354474625 0 458.2599354474625 0 25.713337517843655 0 0 0 0.3494850021680094 0 0 0 VQV[PA] 2.6493 - 10 NaN NaN 88778.8 NaN 3559 2002 5559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5565 34.265 NaN 188290 35 0 34667 0.327 + 9687 HVTQEDFEM 9 42 576.2373454770075 1150.4601380208148 2 576.2374877929688 MULTI HCD FTMS 0 0 0 5564 99577.4453125 0.7044748663914999 -4 0.0964508056640625 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 76.82478488871298 0.006879825292024087 1 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 [HV]T + + 73.097 1.4267 0.42313 6.3537 6.3537 63.879 0 0 0 0 61.414412723804546 0 0 0 2.5 0 1.5356668758921828 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.3537 + + 88 + NaN NaN 128980.8 NaN 3560 2003 5564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5566 34.269 NaN 32830 35 0 4691.9 0.261 + -1 LSSLMFSEIK 10 18 585.8073545276269 1169.6001561220537 2 585.8071899414062 MULTI HCD FTMS 0 0 0 5564 37580.890625 0.9346709219238037 -1 0.0166473388671875 2 Oxidation (M) _LSSLM(Oxidation (M))FSEIK_ REV__ENST00000484575.1_1_2:209101805-209104899:-|nuORF 5.296884461304476 0.4472664531305844 1 E 1 -1 11.99 0 0 1.0251 0 0 259.19267663237457 778.3485811822874 1037.541257814662 0 0 0 0 0 0.5 0 0 0 E 1.0251 + + 2 + NaN NaN 84868.9 NaN 3561 2003 5564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5567 34.272 NaN 95982 35 0 17301 0.262 + 3494 EHFQESSL 8 34 488.7220490167268 NaN 0 488.7218933105469 PEAK HCD FTMS 0 0 0 5564 17551.216796875 0.9976066250271154 1 -0.02330780029296875 3 Unmodified _EHFQESSL_ REV__ENSG00000159685|ENST00000290913|CHCHD6;REV__ENST00000503119.5_1_3:126499264-126676457:+|nuORF;REV__ENST00000514908.5_1_3:126423131-126653948:+|nuORF 21.74664581756881 0.38360090182421286 1 S 1 -1 11.026 0 0 1.1303 0 0 131.08470975044742 754.2805880182249 885.3652977686722 0 0 0 0 0 0.3807196863200844 0 0.5 0 S 1.1303 + + 2 + NaN NaN 105044.7 NaN 3562 2003 5564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5568 34.276 NaN 38860 35 0 4515.9 0.261 + 25331 SDFCSRTSF 9 26 525.221363681573 1048.428174429946 2 525.22119140625 MULTI HCD FTMS 0 0 0 5564 12110.2314453125 0.7909734497921099 4 -0.07986068725585938 4 Unmodified _SDFCSRTSF_ REV__ENST00000367142.4_1_1:205698746-205719177:-|nuORF 5.731851221503515 0.3075653528928475 1 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.477 0 0 796.3187123029312 0 796.3187123029312 0 25.969100130080562 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.477 + + 3 NaN NaN 86176.3 NaN 3563 2003 5564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5569 34.279 NaN 13999 35 0 5056 0.261 + -1 RFMELTYRH 9 12 634.8141752755772 1267.6137976179543 2 634.8136596679688 MULTI HCD FTMS 0 0 0 5564 8898.2001953125 0.4492286589496407 4 -0.07986068725585938 5 Oxidation (M) _RFM(Oxidation (M))ELTYRH_ REV__ENSG00000118503|ENST00000612899|TNFAIP3;REV__TNFAIP3|p.P457Lfs*20|1|0.19|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84637.4 NaN 3564 2003 5564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5570 34.282 NaN 15864 35 0 4110.2 0.261 -1 MTSGEPWACAG 11 12 604.7388724316373 1207.4631919300746 2 604.7396850585938 MULTI HCD FTMS 0 0 0 5564 5945.07275390625 0.09719670244654349 -7 0.18627548217773438 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MTSGEPWAC(Carbamidomethyl (C))AG_ ENST00000594136.1_1_19:41313804-41313912:+|nuORF 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86485.7 NaN 3565 2003 5564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5572 34.288 NaN 624080 35 0 234110 0.327 + 30670 VPEEKAAEL 9 63 493.2637106780429 984.5128684228858 2 493.2636413574219 MULTI HCD FTMS 0 0 0 5571 312795.71875 0.5181377616386662 -4 0.08983993530273438 1 Unmodified _VPEEKAAEL_ ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23 57.24910588100465 0.021429789259086996 1 VPEHAV 6 5 66.701 0 0 6.775 0 0 0 349.1515291803344 349.1515291803344 44.39387834276005 0 0 0 0 0.8494850021680094 1.6989700043360187 0.7059771852360797 0 VPEHAV 6.775 - 682 + NaN NaN 191942.9 NaN 3566 2004 5571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5573 34.292 NaN 192830 35 0 23847 0.261 + 25076 SADMSHVAL 9 42 473.7186701406204 945.4227873480409 2 473.71844482421875 MULTI HCD FTMS 0 0 0 5571 153916.1875 0.9622475557559593 -1 0.02330780029296875 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 58.678817012210395 0.019429721296335044 1 {[SA]|[TG]}D{M(Oxidation (M))|F}SHVA{I|L} 9 0 + 52.686 0 0 5.5728 5.5728 89.074 0 0 0 0.08355938871737578 0.08355938871737578 0.08355938871737578 13.093859345357181 0 2.4604093769761874 0 0 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}SHVA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]SA{I|L} 5.5728;4.1878 +;- + 56 + NaN NaN 128848.3 NaN 3567 2004 5571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5574 34.296 NaN 102540 35 0 24064 0.261 -1 NADPQAVTM 9 36 481.71612515155437 961.4176973699088 2 481.7159423828125 MULTI HCD FTMS 0 0 0 5571 36580.8828125 0.02542520089715848 83 -2.1578025817871094 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 16.149105407346934 0.22083165093524068 1 AVT{M(Oxidation (M))|F} 4 -1 35.918 0 0 3.7359 0 0 525.21971260604 0 525.21971260604 0 35.9176003468815 0 0 0 1 0 0 0 AVT{M(Oxidation (M))|F} 3.7359 + + 38 + NaN NaN 100731.9 NaN 3568 2004 5571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5575 34.299 NaN 17172 35 0 4241.1 0.261 + -1 VQKCCHWCC 9 19 640.745361328125 NaN 0 640.745361328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 3 Carbamidomethyl (C) _VQKC(Carbamidomethyl (C))CHWC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000468416.1_1_5:66904622-66904778:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90351.9 NaN 3569 2004 5571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5577 34.304 NaN 595470 35 0 55652 0.327 + 31078 VTESANQLTQR 11 59 623.8232071095631 1245.631861285926 2 623.8230590820312 MULTI HCD FTMS 0 0 0 5576 344961.8125 0.20729760068529957 6 -0.13282012939453125 1 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 49.74193281347159 0.08247801322054248 1 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR 11 -1 + 119.95 0 0 9.6293 9.6293 90.231 0 0 0 3.4510795087364414 3.4510795087364414 3.4510795087364414 3.4510795087364414 0 3.9247425010840047 0 2.677825934852436 0 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR;[TA]ADTAAQ{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}TQR;[TA]ASEAAQ{I|L}TQR;[TA]ADTAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DATAQ{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}T[AG]R;[TA]ASEAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}AASR 9.6293;9.3523;8.8965;8.8965;8.6918;8.6218;8.4389;8.1661;7.9614;7.8064 -;-;-;-;-;-;-;-;-;- 1949 NaN NaN 175337.6 NaN 3570 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5578 34.309 NaN 268360 35 0 26330 0.264 + 31082 VTESANQLTQR 11 63 416.2175406793484 1245.6307926382453 3 416.217529296875 MULTI HCD FTMS 0 0 0 5576 67604.0859375 0.2262553684292434 8 -0.18932723999023438 2 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 11.517880264261096 0.3567267433909682 1 T{I|L}Q[WR]S[PG] 8 -1 23.994 0 0 1.9263 0 0 302.1700916974625 0 302.1700916974625 0 10.49955520665284 0 0 0 1.2134679910804405 0 0 0 T{I|L}Q[WR]S[PG] 1.9263 - 68 NaN NaN 126785.7 NaN 3571 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5579 34.312 NaN 128460 35 0 27522 0.261 -1 FPDSEPPRM 9 45 546.2450052822049 1090.4754576312098 2 546.2451171875 MULTI HCD FTMS 0 0 0 5576 51051.63671875 0.7569694876151348 12 -0.30220794677734375 3 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 36.506200033944 0.08138327636155518 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DSERDP 8 -1 68.933 0 0 6.3214 0 0 0 144.0432598862175 144.0432598862175 60.34949089312384 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DSERDP 6.3214 - 130 NaN NaN 102282.4 NaN 3572 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5580 34.316 NaN 102950 35 0 13266 0.261 -1 LLFCCMIL 8 25 506.75690518381913 NaN 0 506.74188232421875 PEAK HCD FTMS 0 0 0 5576 2662.93408203125 1 0 0 4 Carbamidomethyl (C) _LLFC(Carbamidomethyl (C))CMIL_ ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96;PHLDB2-CD96|1|fusion;PHLDB2-CD96|2|fusion 2.8892196856762586 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 3.0989 0 0 0.30637 0 0 712.4440644186164 136.00315271549064 848.4472171341071 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.30637 + + 1 + NaN NaN 89334.6 NaN 3573 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5581 34.319 NaN 63980 35 0 9908.3 0.261 + 15770 LPGAASDILT 10 33 479.2663889913824 956.5182250495649 2 479.2664794921875 MULTI HCD FTMS 0 0 0 5576 19355.12890625 0.8708646713175113 -3 0.056598663330078125 5 Unmodified _LPGAASDILT_ ENST00000528499.5_1_11:130013375-130013492:+|nuORF 18.1463463914782 0.3413772152514074 1 T{I|L} 2 9 22.959 0 0 2.4002 0 0 724.375291892775 0 724.375291892775 0 10.199178382953063 0 0 0 0.5 0 0 0 T{I|L} 2.4002 - 12 NaN NaN 108545.3 NaN 3574 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5582 34.322 NaN 43427 35 0 5649.1 0.261 + -1 YLTYSMLN 8 28 510.73825754273975 1019.4619621522795 2 510.2212829589844 MULTI HCD FTMS 0 0 0 5576 10939.8017578125 1 0 0 6 Oxidation (M) _YLTYSM(Oxidation (M))LN_ REV__ENSG00000164073|ENST00000641686|MFSD8;REV__ENST00000504126.1_1_4:128842663-128843132:-|nuORF 2.302733041254933 0.5385759549224092 1 S 1 -1 5.4846 0 0 0.53798 0 0 541.2887881794264 388.1182039850219 929.4069921644484 0 0 0 0 0 0 0 0 0 S 0.53798 + + 6 + NaN NaN 91953.3 NaN 3575 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5583 34.326 NaN 17558 35 0 3899.9 0.261 -1 WWPCLVYN 8 19 569.2619496626379 1136.5093463920757 2 569.2605590820312 MULTI HCD FTMS 0 0 0 5576 11824.775390625 0.3836586716402645 6 -0.13282012939453125 7 Carbamidomethyl (C) _WWPC(Carbamidomethyl (C))LVYN_ ENSG00000116062|ENST00000234420|MSH6;ENST00000538136.1_1_2:48011218-48025765:+|nuORF;MSH6|p.E528*|1|0.12|ENSG00000116062|chr2:47799562-47799575|CTGGAAGGTGATCC/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93747.3 NaN 3576 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5584 34.329 NaN 41007 35 0 9233.8 0.261 + -1 PYLMIFLI 8 29 513.2905760202501 1024.5665991073001 2 513.2904052734375 MULTI HCD FTMS 0 0 0 5576 8668.1875 0.03888098478721302 26 -0.6612548828125 8 Oxidation (M) _PYLM(Oxidation (M))IFLI_ REV__ENSG00000133657|ENST00000645319|ATP13A3;REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85530.2 NaN 3577 2005 5576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5586 34.334 NaN 94271 35 0 15945 0.326 + 3897 EPQKEINSL 9 35 529.2797947313643 1056.5450365295285 2 529.2781982421875 MULTI HCD FTMS 0 0 0 5585 27105.421875 0.07470801486281867 -7 0.16632843017578125 1 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 13.042465956692817 0.2476723265019929 1 K{[QN]|[E{I|L}]|[KN]}N{[TV]|[{I|L}S]} 6 3 14.142 0 0 1.3385 0 0 354.1532041094097 0 354.1532041094097 0 6.18317473533317 0 0 0 0 0 0.4247425010840047 0.3494850021680094 + K{[QN]|[E{I|L}]|[KN]}N{[TV]|[{I|L}S]} 1.3385 + + 61 + NaN NaN 88831 NaN 3578 2006 5585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5587 34.339 NaN 51325 35 0 8203.8 0.261 + 33982 YLVCNYSPK 9 23 543.7674483989192 NaN 0 543.7661743164062 PEAK HCD FTMS 0 0 0 5585 5297.10986328125 0.3139011354800657 1 -0.009983062744140625 2 Unmodified _YLVCNYSPK_ ENSG00000121005|ENST00000262207|CRISPLD1 1.4819007175156935 0.28806575819904134 1 N 1 8 6.9897 0 0 0.6439 0 0 478.219244007163 490.2336519830688 968.4528959902318 0 0 0 0 0 0 0 0 0 + N 0.6439 + + 2 + NaN NaN 86905.7 NaN 3579 2006 5585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5589 34.344 NaN 107270 35 0 31972 0.327 + -1 YECYQCQYP 9 29 627.2331071416546 1252.4516613501091 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5588 87028 0.9216723036396494 -6 0.12640762329101562 1 Carbamidomethyl (C) _YECYQC(Carbamidomethyl (C))QYP_ REV__ENSG00000005889|ENST00000304543|ZFX;REV__ENSG00000067646|ENST00000155093|ZFY;REV__nc|ENSG00000005889|P17010-2|ZFX;REV__nc|ENSG00000005889|P17010-3|ZFX;REV__nc|ENSG00000067646|P08048-2|ZFY;REV__nc|ENSG00000067646|P08048-3|ZFY 0.5247636613948944 0.34703895399870666 1 PE 2 -1 17.959 0 0 1.4339 0 0 1008.3652013115727 0 1008.3652013115727 0 10.969100130080562 0 0 0 0 0 0 0 PE 1.4339 - 2 NaN NaN 93488.7 NaN 3580 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5590 34.349 NaN 225610 35 0 82867 0.264 + 2657 DVFRDPALKR 10 37 406.23154265413933 1215.672798562618 3 406.2313537597656 MULTI HCD FTMS 0 0 0 5588 65543.0859375 0.2497537743876779 -5 0.09650802612304688 2 Unmodified _DVFRDPALKR_ ENSG00000131469|ENST00000253788|RPL27 6.623454094837244 0.4402447091689353 1 PA[K{I|L}]R 5 5 26.466 0 0 2.1771 0 0 632.292685500373 0 632.292685500373 0 26.46591250700361 0 0 0 0.4247425010840047 0 0 0 + PA[K{I|L}]R 2.1771 + + 9 + NaN NaN 109268.5 NaN 3581 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5591 34.352 NaN 99041 35 0 11722 0.261 + 2190 DIHGPDAKL 9 32 483.25650935674184 964.4984657802837 2 483.25640869140625 MULTI HCD FTMS 0 0 0 5588 45780.1171875 0.6823604526700284 -2 0.03990936279296875 3 Unmodified _DIHGPDAKL_ ENSG00000124942|ENST00000378024|AHNAK 43.981846655682396 0.04706587046877104 1 D{I|L}HG[DP]AK{I|L} 9 0 + 72.898 0 0 7.5581 7.5581 96.144 0 0 0 51.928571858695136 9.137342758552691 9.137342758552691 72.8976719887757 0 2.004432191740108 1.6989700043360187 0 0 + + D{I|L}HG[DP]AK{I|L} 7.5581 + + 93 + NaN NaN 97735 NaN 3582 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5592 34.355 NaN 128700 35 0 14392 0.261 -1 MPVHAAVQM 9 46 500.24104362038014 998.4675343075603 2 500.2410583496094 MULTI HCD FTMS 0 0 0 5588 47185.90625 0.7400836469809204 5 -0.12282180786132812 4 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 28.486842064014134 0.11819662193267319 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]}VQ{M(Oxidation (M))|F} 8 -1 + 48.99 0 0 4.9065 4.9065 84.697 0 0 0 5.071749372698164 32.29486901908295 5.071749372698164 7.897131498072127 0 2.2614393726401687 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]}VQ{M(Oxidation (M))|F};M[R{M(Oxidation (M))|F}][TA]VQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}[TA]TV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[SA]|[TG]}{[ES]|[DT]|[{I|L}C]};M[R{M(Oxidation (M))|F}][KC]V{[ES]|[DT]|[{I|L}C]} 4.9065;4.1156;3.9788;1.2898;1.0196;0.99148 -;-;-;-;-;- 150 NaN NaN 100154.5 NaN 3583 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5593 34.359 NaN 41860 35 0 5748.5 0.261 -1 MPELVQHKL 9 19 555.8019328665739 1109.5893127999477 2 555.80224609375 MULTI HCD FTMS 0 0 0 5588 17698.63671875 0.7139537240032958 -2 0.03990936279296875 5 Oxidation (M) _M(Oxidation (M))PELVQHKL_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 6.723162845929126 0.3000504726104499 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84578.4 NaN 3584 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5594 34.362 NaN 80868 35 0 24106 0.261 -1 RYLEKPMEI 9 23 597.8131162390399 1193.6116795448797 2 597.8136596679688 MULTI HCD FTMS 0 0 0 5588 12173.72265625 0.015910005470250847 -6 0.12640762329101562 6 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 K 1 -1 11.99 0 0 1.0045 0 0 504.22583766141514 558.2689303033811 1062.4947679647962 0 0 0 0 0 0.5 0 0 0 K 1.0045 + + 2 + NaN NaN 97760.8 NaN 3585 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5595 34.365 NaN 47178 35 0 7395.3 0.261 + -1 PSFFNKSLM 9 26 543.7674483989192 NaN 0 543.7601318359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _PSFFNKSLM(Oxidation (M))_ REV__ENST00000215832.10_1_22:22118256-22118466:-|nuORF 3.5964929083625545 0.27781873954207675 1 N 1 -1 2.7642 0 0 0.25464 0 0 478.2229938663946 490.23044763736567 968.4534415037602 0 0 0 0 0 0 0 0 0 N 0.25464 + + 5 + NaN NaN 86331.8 NaN 3586 2007 5588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5597 34.371 NaN 109770 35 0 18920 0.327 -1 VAAPADPEM 9 30 458.7077247387575 915.4008965443151 2 458.7077941894531 MULTI HCD FTMS 0 0 0 5596 51045.984375 0.6847631463141357 -3 0.06631851196289062 1 Oxidation (M) _VAAPADPEM(Oxidation (M))_ ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 34.10243960390752 0.09241788333544565 1 [Q{I|L}][PA]DPE{M(Oxidation (M))|F} 8 -1 + 48.193 0 0 5.2647 5.2647 83.865 0 0 0 4.390019164509269 4.390019164509269 4.390019164509269 4.390019164509269 0 1.8807196863200843 0 0 0 [Q{I|L}][PA]DPE{M(Oxidation (M))|F};{[VA]|[{I|L}G]}A[PA]DPE{M(Oxidation (M))|F} 5.2647;4.7851 -;+ + 39 + NaN NaN 102693.3 NaN 3587 2008 5596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5598 34.375 NaN 53160 35 0 5276.1 0.261 -1 LPDDPAKTTM 10 30 552.7659068832946 1103.5172608333892 2 553.2671508789062 MULTI HCD FTMS 0 0 0 5596 20560.62890625 0.22758831545884708 47 -1.2618217468261719 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 2.735195868890462 0.4608258780945842 1 Q 1 -1 3.9794 0 0 0.36061 0 0 326.09692499530166 646.3228853815061 972.4198103768078 0 0 0 0 0 0 0 0 0 Q 0.36061 - 1 + NaN NaN 92941.9 NaN 3588 2008 5596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5599 34.379 NaN 26661 35 0 3217.3 0.261 + 28058 TGMCYPLR 8 20 470.722217946938 939.429882960676 2 470.7218017578125 MULTI HCD FTMS 0 0 0 5596 18520.416015625 1 0 0 3 Unmodified _TGMCYPLR_ ADAMTS14|p.H377Y|1|0.1|ENSG00000138316|chr10:70732280-70732280|C/T|missense_variant 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95351.4 NaN 3589 2008 5596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5600 34.382 NaN 93615 35 0 14085 0.261 + -1 IMMEMFEDF 9 47 403.494520008022 1207.461730624266 3 403.82940673828125 MULTI HCD FTMS 0 0 0 5596 17672.8046875 1 0 0 4 Oxidation (M) _IM(Oxidation (M))MEMFEDF_ REV__ENSG00000185101|ENST00000332826|ANO9;REV__ENST00000526142.5_1_11:419653-429752:-|nuORF;REV__ENST00000528927.5_1_11:418373-431830:-|nuORF;REV__ENST00000534161.5_1_11:418373-429524:-|nuORF;REV__nc|ENSG00000185101|A1A5B4-2|ANO9 0.9622753412299311 0.3437222896773173 1 M 1 -1 3.0989 0 0 0.25665 0 0 689.2324958603973 384.17209802799067 1073.404593888388 0 0 0 0 0 0 0 0 0 M 0.25665 + + 1 + NaN NaN 90927.7 NaN 3590 2008 5596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5602 34.387 NaN 287490 35 0 22821 0.327 + 4371 EWPFVGTER 9 65 560.7762397627264 NaN 0 560.7905883789062 PEAK HCD FTMS 0 0 0 5601 6049.56396484375 0.2184978467141519 12 -0.32575225830078125 1 Unmodified _EWPFVGTER_ REV__ENST00000407193.5_1_5:149829167-149829215:-|nuORF 10.073929032068715 0.24642998803896465 1 YANS 4 -1 22.607 0 0 2.0193 0 0 64.01810394283332 617.3052688843931 681.3233728272264 0 0 0 0 0 0 0 0.3054621874040891 0 YANS 2.0193 - 438 + NaN NaN 137452.9 NaN 3591 2009 5601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5603 34.392 NaN 324350 35 0 65371 0.261 + 3898 EPQKEINSL 9 47 529.2797947313643 1056.5450365295285 2 529.27978515625 MULTI HCD FTMS 0 0 0 5601 115340.1875 0.3179008421919384 -4 0.08293914794921875 2 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 21.536976647645854 0.1742816388551942 1 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 8 4 42.752 0 0 4.0464 0 0 149.1047609139154 0 149.1047609139154 0 32.29486901908295 0 0 0 0 0 0.8494850021680094 1.1861818737241734 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 4.0464 - 236 + NaN NaN 137333.1 NaN 3592 2009 5601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5604 34.395 NaN 314040 35 0 56943 0.261 + 25981 SPDSGVYEM 9 58 500.70017300012114 999.3857930670423 2 500.699951171875 MULTI HCD FTMS 0 0 0 5601 76555.3984375 0.14991717684542674 -5 0.09958267211914062 3 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 96.28474662873226 0.004361282420133734 1 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 67.185 0 0 6.7226 6.7226 91.641 0 0 0 6.5094614524342305 49.59237194858268 6.5094614524342305 15.590292461168197 0 2.1747425010840047 0 1.7689301784845295 0 [DP]SSGVYE{M(Oxidation (M))|F};[DP]S[VG]SYE{M(Oxidation (M))|F} 6.7226;5.1626 -;- 236 NaN NaN 136933.2 NaN 3593 2009 5601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5605 34.399 NaN 59888 35 0 5879.2 0.261 + 2056 DEFSIFFD 8 31 510.22060815835033 1018.4266633835007 2 510.7098693847656 MULTI HCD FTMS 0 0 0 5601 5338.53515625 0.7848360305644236 -4 0.08293914794921875 4 Unmodified _DEFSIFFD_ ENSG00000116580|ENST00000368331|GON4L;ENST00000483032.1_1_1:155726967-155727102:-|nuORF;nc|ENSG00000116580|Q3T8J9-3|GON4L 7.910154910731844 0.5302565402355366 1 S 1 7 15.797 0 0 1.5511 0 0 391.14022102109055 537.2316988580686 928.3719198791591 0 0 0 0 0 0.8807196863200843 0 0 0 + S 1.5511 + + 7 + NaN NaN 104783.9 NaN 3594 2009 5601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5606 34.402 NaN 14660 35 0 4200.3 0.261 + -1 TPPTCTTWEDA 11 16 639.7688225415535 1277.523092149907 2 639.7698364257812 MULTI HCD FTMS 0 0 0 5601 7372.91748046875 1 0 0 5 Carbamidomethyl (C) _TPPTC(Carbamidomethyl (C))TTWEDA_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88421.5 NaN 3595 2009 5601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5608 34.407 NaN 225310 35 0 43081 0.327 + 9688 HVTQEDFEM 9 35 576.2373454770075 1150.4601380208148 2 576.2374877929688 MULTI HCD FTMS 0 0 0 5607 129440.75 0.9157470828428524 3 -0.08643722534179688 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 83.42873516780209 0.004742894019233849 1 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 80.628 0 0 7.0083 7.0083 91.618 0 0 0 4.137342758552691 73.63798466605289 4.137342758552691 13.015384402724592 0 2.6989700043360187 0 0.4247425010840047 0.3807196863200844 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[DG]{[CP]|[EA]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7.0083;5.877;3.2975 +;-;- + 131 NaN NaN 136234.5 NaN 3596 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5609 34.412 NaN 109450 35 0 19425 0.262 -1 SSGPVDPMM 9 26 476.6910442976 951.367535662 2 476.6910705566406 MULTI HCD FTMS 0 0 0 5607 31566.611328125 0.14965453010449564 34 -0.9205856323242188 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 1 D 1 -1 14.292 0 0 1.5022 0 0 409.1346653550931 424.183261713023 833.3179270681161 0 0 0 0 0 0.8807196863200843 0 0 0 D 1.5022 + + 4 + NaN NaN 97062.6 NaN 3597 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5610 34.415 NaN 124850 35 0 40689 0.261 + 35194 YVLEQQRI 8 31 524.792955519735 1047.5713581062698 2 524.7933959960938 MULTI HCD FTMS 0 0 0 5607 22286.060546875 0.036039441050382065 -6 0.11953353881835938 3 Unmodified _YVLEQQRI_ ENSG00000162825|ENST00000698833|NBPF20;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000162825|P0DPF2|NBPF20 5.230669730166228 0.5342319408533849 1 [YV]MV 4 6 38.188 0 0 3.6453 0 0 0 552.3076611670698 552.3076611670698 38.187587626244124 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]MV 3.6453 - 20 NaN NaN 96176 NaN 3598 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5611 34.419 NaN 24072 35 0 6120.4 0.261 -1 LIMVMCYLK 9 18 585.8073545276269 1169.6001561220537 2 586.3092651367188 MULTI HCD FTMS 0 0 0 5607 8459.58203125 0.3181774940624164 10 -0.2858734130859375 4 Carbamidomethyl (C) _LIMVMC(Carbamidomethyl (C))YLK_ ENSG00000145623|ENST00000274276|OSMR 0.6014990680409731 0.3464572424761564 1 P 1 -1 3.0989 0 0 0.26496 0 0 900.9220077839663 168.5972078912719 1069.5192156752382 0 0 0 0 0 0 0 0 0 P 0.26496 - 1 + NaN NaN 102403.1 NaN 3599 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5612 34.422 NaN 90548 35 0 11998 0.261 + -1 WCTFTEKN 8 26 543.2413706649085 NaN 0 543.2592163085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _WC(Carbamidomethyl (C))TFTEKN_ REV__ENSG00000113494|ENST00000618457|PRLR;REV__nc|ENSG00000113494|P16471-3|PRLR;REV__nc|ENSG00000113494|P16471-4|PRLR;REV__nc|ENSG00000113494|P16471-5|PRLR;REV__nc|ENSG00000113494|P16471-6|PRLR;REV__nc|ENSG00000113494|P16471-7|PRLR;REV__nc|ENSG00000113494|P16471-9|PRLR 4.3292370932331545 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.64453 0 0 560.2380243072797 464.17682825260005 1024.4148525598798 0 0 0 0 0 0 0 0 0 G 0.64453 - 11 + NaN NaN 92102.3 NaN 3600 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5613 34.425 NaN 14997 35 0 5973.1 0.261 -1 MLWWEEVED 9 12 639.7688225415535 1277.523092149907 2 639.7686157226562 MULTI HCD FTMS 0 0 0 5607 2422.1982421875 0.3285264277816796 1 -0.02993011474609375 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MLWWEEVED_ DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;ENSG00000198947|ENST00000357033|DMD;ENST00000488902.5_1_X:32235174-33229429:-|nuORF;nc|ENSG00000198947|P11532|DMD 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107899.5 NaN 3601 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5614 34.429 NaN 14506 35 0 6362.2 0.261 + -1 MVWWGFFHL 9 12 619.7958374023438 NaN 0 619.7958374023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _M(Oxidation (M))VWWGFFHL_ REV__ENST00000273153.9_1_3:39183867-39184080:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92468.5 NaN 3602 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5615 34.432 NaN 35916 35 0 8271.6 0.261 -1 HPMRAIFMI 9 26 566.2942406899269 NaN 0 566.2840576171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _HPM(Oxidation (M))RAIFMI_ ENSG00000101109|ENST00000372806|STK4;ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000101109|Q13043-2|STK4;nc|ENSG00000104375|Q13188-2|STK3 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85822.3 NaN 3603 2010 5607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5617 34.437 NaN 799810 35 0 328190 0.327 + 30671 VPEEKAAEL 9 61 493.2637106780429 984.5128684228858 2 493.26373291015625 MULTI HCD FTMS 0 0 0 5616 436502.84375 0.7230553132675748 3 -0.083038330078125 1 Unmodified _VPEEKAAEL_ ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23 80.6760300276096 0.005633624786464751 1 VPEEKAAE{I|L} 9 0 + 87.475 0 0 8.8851 8.8851 93.652 0 0 0 43.33999355612811 6.812952864459447 6.812952864459447 9.507046801327732 0 2.6549471895720984 1.6989700043360187 1.4604093769761874 0 + + VPEEKAAE{I|L};[VP]EEKAAE{I|L};[VP]EEK[DG]V{I|L};VPEGKDVE{I|L};[EP]VEKAAE{I|L};[VP]EEK{[MG]|[TS]}PV;[VP]EEK[DG]{I|L}V;[VP]E[QT]AVE{I|L};[VP]EN[VS]VE{I|L};[VP]EE{[QG]|[NA]}[{I|L}T]{I|L} 8.8851;7.9194;6.8227;6.7869;6.5227;6.4119;6.3135;5.9067;5.6474;5.6237 +;+;-;-;-;-;-;-;-;- + 1307 + NaN NaN 212327.2 NaN 3604 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5618 34.442 NaN 146690 35 0 15840 0.261 + 25077 SADMSHVAL 9 34 473.7186701406204 945.4227873480409 2 473.718505859375 MULTI HCD FTMS 0 0 0 5616 84494.6171875 0.5282403377046182 6 -0.1693878173828125 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 49.93300154707207 0.03166451819912738 1 {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 9 0 + 48.394 0 0 5.1188 5.1188 89.319 0 0 0 4.2216751192405155 4.2216751192405155 4.2216751192405155 18.76410021363376 0 2.3494850021680094 0 0.3807196863200844 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}V[HS]A{I|L} 5.1188;3.1341 +;- + 59 NaN NaN 113285.8 NaN 3605 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5619 34.445 NaN 82846 35 0 10529 0.261 -1 YTCGDCGKTF 10 28 604.7388724316373 1207.4631919300746 2 604.7392578125 MULTI HCD FTMS 0 0 0 5616 53688.94140625 0.8777668968145785 1 -0.029911041259765625 3 2 Carbamidomethyl (C) _YTC(Carbamidomethyl (C))GDC(Carbamidomethyl (C))GKTF_ ENSG00000182903|ENST00000511833|ZNF721;nc|ENSG00000182903|Q8TF20|ZNF721 5.296884461304476 0.4472664531305844 1 T{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.466 0 0 941.3366566388687 0 941.3366566388687 0 29.776296993281406 0 0 0 0.5 0 0.3807196863200844 0 T{M(Oxidation (M))|F} 2.466 + + 2 NaN NaN 90741.3 NaN 3606 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5620 34.449 NaN 106310 35 0 20905 0.263 -1 SSGPVDPMM 9 24 476.6910442976 951.367535662 2 476.6910095214844 MULTI HCD FTMS 0 0 0 5616 27187.701171875 0.1288945018901424 35 -0.9437828063964844 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 1 D 1 -1 14.732 0 0 1.5485 0 0 427.2064652143188 406.1108491988891 833.3173144132079 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 2 + NaN NaN 98001.5 NaN 3607 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5621 34.452 NaN 33683 35 0 5333.6 0.261 + -1 VGAAAAEMM 9 24 441.68809129984214 881.3616296664843 2 441.6885986328125 MULTI HCD FTMS 0 0 0 5616 17882.16796875 0.1688199920167171 24 -0.6413154602050781 5 2 Oxidation (M) _VGAAAAEM(Oxidation (M))M(Oxidation (M))_ REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF 7.910154910731844 0.2910521888787154 1 K{M(Oxidation (M))|F} 2 -1 20.573 0 0 2.3343 0 0 588.2138158010531 0 588.2138158010531 0 20.573193899842437 0 0 0 0.5 0 0 0 K{M(Oxidation (M))|F} 2.3343 - 7 + NaN NaN 86060.6 NaN 3608 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5622 34.455 NaN 188180 35 0 26942 0.261 + 24749 RYMEVSGNL 9 44 542.7582313804813 1083.5019098277626 2 542.757568359375 MULTI HCD FTMS 0 0 0 5616 66814.2265625 0.340666814954345 -3 0.06650161743164062 6 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 49.52724829834842 0.03223213920720493 1 EVSGN{I|L} 6 3 56.771 0 0 5.2396 0 0 466.19993788886876 0 466.19993788886876 0 51.28653141768609 0 0 0 1.610924374808178 0 0 0 + EVSGN{I|L} 5.2396 + + 98 NaN NaN 125030.8 NaN 3609 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5623 34.459 NaN 14293 35 0 5326.1 0.261 -1 MLICVFMKI 9 12 585.8073545276269 1169.6001561220537 2 585.806640625 MULTI HCD FTMS 0 0 0 5616 7552.14453125 0.18782870161223728 7 -0.20269393920898438 7 Carbamidomethyl (C),Oxidation (M) _MLIC(Carbamidomethyl (C))VFM(Oxidation (M))KI_ ENST00000287474.9_1_1:100195237-100203667:-|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90997 NaN 3610 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5624 34.462 NaN 24930 35 0 4932.8 0.261 + 9426 HPVGFHPRHG 10 24 570.793758213508 1139.572963493816 2 570.7943725585938 MULTI HCD FTMS 0 0 0 5616 5983.3857421875 0.2570044882550336 -5 0.10289382934570312 8 Unmodified _HPVGFHPRHG_ ENST00000374606.9_1_6:33257467-33257957:+|nuORF;ENST00000395131.5_1_6:33257384-33257957:+|nuORF 3.2813086475875832 0.45793521633868084 1 HPV 3 7 24.693 0 0 2.1668 0 0 0 803.3735445611936 803.3735445611936 24.69273760456403 0 0 0 0 0 0 0 0 + HPV 2.1668 + + 5 + NaN NaN 86723.4 NaN 3611 2011 5616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5626 34.467 NaN 745470 35 0 69996 0.327 + 1517 AYVHMVTHF 9 95 560.7658100823496 1119.5170672314991 2 560.765625 MULTI HCD FTMS 0 0 0 5625 315041.8125 0.34993314317731694 -4 0.09641265869140625 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 99.536 0 0 8.891 8.891 89.149 0 0 0 2.614393726401687 2.614393726401687 2.614393726401687 2.614393726401687 0 3.004432191740108 1.6989700043360187 0.566901560044258 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DS]|[MA]|[CV]|TT}NAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}V[PA]CN;AYV[MN]AAPH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}AQ{[RE]|[WV]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DS]|[MA]|[CV]|TT}GGAPH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}AAG{[RE]|[WV]};{M(Oxidation (M))|F}SV[MN]AAPH{M(Oxidation (M))|F} 8.891;8.6574;7.9773;6.5423;6.0688;5.9166;5.8203;5.7237;5.1284;5.0029 +;+;-;-;-;-;-;-;-;- + 4239 + NaN NaN 194277.6 NaN 3612 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5627 34.472 NaN 158200 35 0 14191 0.261 + 31079 VTESANQLTQR 11 42 623.8232071095631 1245.631861285926 2 623.8231201171875 MULTI HCD FTMS 0 0 0 5625 84339.5546875 0.050682094933581556 13 -0.3223838806152344 2 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 42.835182525472874 0.11869059338859039 1 TAAQ{I|L}TQR 8 -1 97.477 0 0 7.8255 0 0 358.14781386543126 0 358.14781386543126 0 74.91434719156942 0 0 0 3.4247425010840047 0 2.341129063296272 0 TAAQ{I|L}TQR 7.8255 - 343 NaN NaN 106742.3 NaN 3613 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5628 34.475 NaN 274330 35 0 34153 0.264 -1 RYVRKFVLM 9 60 409.90567833389133 1226.695205601874 3 409.90570068359375 MULTI HCD FTMS 0 0 0 5625 58316.41796875 0.5540446737535185 6 -0.17278289794921875 3 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 8.155526934196011 0.2891920862272901 1 {I|L}{M(Oxidation (M))|F} 2 -1 27.078 0 0 2.2074 0 0 948.5676804248205 0 948.5676804248205 0 2.0166752027937207 0 0 0 0.7614393726401688 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2074 + + 46 NaN NaN 125594.2 NaN 3614 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5629 34.478 NaN 101730 35 0 23169 0.261 + 5998 FPDRIDECP 9 31 546.2450052822049 1090.4754576312098 2 546.244873046875 MULTI HCD FTMS 0 0 0 5625 49125.21875 0.728405474461729 19 -0.4985237121582031 4 Unmodified _FPDRIDECP_ nc|ENSG00000061938|Q07912-2|TNK2 32.78568957990786 0.09846250359632436 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRV[EC]PE 9 3 + 66.717 0 0 6.1182 6.1182 93.409 0 0 0 10.130967512398783 62.11303739409743 10.130967512398783 66.7171311638593 0 1 2 0.2614393726401688 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRV[EC]PE 6.1182 - 93 NaN NaN 94903.3 NaN 3615 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5630 34.482 NaN 177470 35 0 23903 0.261 + -1 GDDLFGDEM 9 42 507.68966034694336 1013.3647677606867 2 507.6898193359375 MULTI HCD FTMS 0 0 0 5625 45548.734375 0.6378537044330664 -2 0.059841156005859375 5 Oxidation (M) _GDDLFGDEM(Oxidation (M))_ REV__ENSG00000113742|ENST00000265085|CPEB4;REV__nc|ENSG00000113742|Q17RY0-2|CPEB4;REV__nc|ENSG00000113742|Q17RY0-3|CPEB4 21.74664581756881 0.17247014374749275 1 E{M(Oxidation (M))|F} 2 -1 34.024 0 0 3.3575 0 0 719.275921223601 0 719.275921223601 0 31.25951216083255 0 0 0 0.8807196863200843 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 3.3575 + + 8 NaN NaN 105682.5 NaN 3616 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5631 34.485 NaN 109700 35 0 19640 0.261 + 7976 GENDRGVSF 9 50 490.72519113122684 979.4358293292537 2 490.7254943847656 MULTI HCD FTMS 0 0 0 5625 32935.68359375 0.8728778720399376 -1 0.029911041259765625 6 Unmodified _GENDRGVSF_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 20.41453444215458 0.18397929046831515 1 RS{M(Oxidation (M))|F} 3 6 35.445 0 0 3.619 0 0 571.233202049025 0 571.233202049025 0 17.486512420283233 0 0 0 0.9247425010840047 0 0 0 RS{M(Oxidation (M))|F} 3.619 - 31 NaN NaN 98784.2 NaN 3617 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5632 34.488 NaN 43055 35 0 7421.6 0.261 + 10730 IQQNIRAD 8 32 479.25804321028835 NaN 0 479.2664489746094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IQQNIRAD_ ENSG00000115540|ENST00000323303|MOB4;nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4 2.0597508629832335 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89686 NaN 3618 2012 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5634 34.494 NaN 671730 35 0 281950 0.327 + 2658 DVFRDPALKR 10 48 406.23154265413933 1215.672798562618 3 406.2314758300781 MULTI HCD FTMS 0 0 0 5633 244702.5 0.9324457660626265 1 -0.026531219482421875 1 Unmodified _DVFRDPALKR_ ENSG00000131469|ENST00000253788|RPL27 18.3397198061782 0.3395684655748306 1 PA{I|L}KR 5 5 39.196 0 0 3.2242 0 0 632.2922234012601 0 632.2922234012601 0 -1.7731749024395782 -1.7731749024395782 0 0 0.4247425010840047 0 0 0 + PA{I|L}KR 3.2242 + + 25 + NaN NaN 187587 NaN 3619 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5635 34.498 NaN 141610 35 0 44923 0.261 -1 CFWEECPPE 9 23 627.2331071416546 1252.4516613501091 2 627.2333984375 MULTI HCD FTMS 0 0 0 5633 94424.015625 1 0 0 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 1.844237919475145 0.33703635659052655 1 PE 2 -1 17.959 0 0 1.4339 0 0 1008.3651361078082 0 1008.3651361078082 0 8.494850021680094 0 0 0 0 0 0 0 PE 1.4339 + + 9 NaN NaN 110733.2 NaN 3620 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5636 34.502 NaN 96272 35 0 9789.1 0.262 + -1 SPCPCCEL 8 42 511.6912181183282 1021.3678833034564 2 511.6911926269531 MULTI HCD FTMS 0 0 0 5633 53175.31640625 1 0 0 3 3 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))PC(Carbamidomethyl (C))C(Carbamidomethyl (C))EL_ REV__ENSG00000183665|ENST00000328599|TRMT12 13.50788311687929 0.4944073034352369 1 SPDSRY 6 -1 63.136 0 0 6.1815 0 0 0 313.04828821353755 313.04828821353755 38.672137691284405 0 0 0 0 1 0 0.7742275032520141 0.4247425010840047 SPDSRY 6.1815 - 50 + NaN NaN 110409.6 NaN 3621 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5637 34.505 NaN 47663 35 0 4802 0.261 + 2191 DIHGPDAKL 9 32 483.25650935674184 964.4984657802837 2 483.2567138671875 MULTI HCD FTMS 0 0 0 5633 27135.91796875 0.40446548428296347 4 -0.11288070678710938 4 Unmodified _DIHGPDAKL_ ENSG00000124942|ENST00000378024|AHNAK 17.11289562659939 0.2125047172822487 1 AK{I|L} 3 6 28.188 0 0 2.9225 0 0 634.271776267775 0 634.271776267775 0 17.309224750678922 0 0 0 0.5 0 0 0 + AK{I|L} 2.9225 + + 28 NaN NaN 79181.3 NaN 3622 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5638 34.508 NaN 194900 35 0 23187 0.261 + 8292 GWDAWYMYR 9 59 416.514697882277 1246.522264247031 3 416.5149230957031 MULTI HCD FTMS 0 0 0 5633 34865.73828125 0.800497161148319 -2 0.056507110595703125 5 Unmodified _GWDAWYMYR_ REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF 3.944395688203298 0.32111559684428237 1 C{I|L} 2 -1 33.188 0 0 2.6624 0 0 0 1027.4133339713283 1027.4133339713283 16.197887582883936 0 0 0 0 0 1.2218487496163564 0 0 C{I|L} 2.6624 - 41 + NaN NaN 126696.3 NaN 3623 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5639 34.512 NaN 43446 35 0 6898 0.261 + -1 EPDVEIMKQ 9 21 552.7659068832946 1103.5172608333892 2 552.7659301757812 MULTI HCD FTMS 0 0 0 5633 6378.24560546875 0.04809279150166254 53 -1.4106254577636719 6 Oxidation (M) _EPDVEIM(Oxidation (M))KQ_ REV__ENSG00000143772|ENST00000429204|ITPKB 1.6526216038709556 0.33848895094777925 1 V 1 -1 6.9897 0 0 0.6334 0 0 132.13069370544503 869.2876680963499 1001.4183618017948 0 0 0 0 0 0 0 0 0 V 0.6334 + + 1 + NaN NaN 111184.1 NaN 3624 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5640 34.515 NaN 8079 35 0 3786.3 0.261 + -1 SWFGMPFYPM 10 6 639.769287109375 NaN 0 639.769287109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _SWFGM(Oxidation (M))PFYPM_ REV__ENSG00000188906|ENST00000298910|LRRK2;REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF;REV__LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82891.6 NaN 3625 2013 5633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5642 34.52 NaN 1619700 35 0 452720 0.327 + 24494 RYLEKPMEI 9 87 597.8131162390399 1193.6116795448797 2 597.8131713867188 MULTI HCD FTMS 0 0 0 5641 738327.9375 0.9649309300169744 1 -0.033267974853515625 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 117.83759599426817 0.001662893820975323 1 [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L} 9 0 + 88.365 0 0 7.4032 7.4032 87.76 0 0 0 14.52845683676783 46.37878623409725 14.52845683676783 4.634679910804408 0 2.055462187404089 1.0457574905606752 1.3129529932484498 0.6421590589602533 + + [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}EKEP{M(Oxidation (M))|F}{I|L};[YR]{I|L}EKPE{M(Oxidation (M))|F}{I|L};RY{I|L}EKP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}T[VG]P{M(Oxidation (M))|F}E{I|L};[YR]{I|L}EA[VS]P{M(Oxidation (M))|F}{I|L};[VP][HV]EKP{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}T[VG]EP{M(Oxidation (M))|F}{I|L};[VP][HV]EKEP{M(Oxidation (M))|F}{I|L} 7.4032;7.0149;6.8582;5.4162;5.1213;5.0664;4.9654;4.8488;4.733;4.5771 +;-;-;+;-;-;-;-;-;- + 3732 NaN NaN 329907.4 NaN 3626 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5643 34.525 NaN 75454 35 0 10558 0.263 + 29561 VAAPADPEM 9 30 458.7077247387575 915.4008965443151 2 458.7076721191406 MULTI HCD FTMS 0 0 0 5641 20234.119140625 0.2714332822703931 3 -0.0863494873046875 2 Oxidation (M) _VAAPADPEM(Oxidation (M))_ ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 42.09456458481378 0.05572955244001856 1 [Q{I|L}][PA]D[EP]{M(Oxidation (M))|F} 8 3 + 35.15 0 0 3.8399 3.8399 80.788 0 0 0 2.272437815030621 2.272437815030621 2.272437815030621 2.272437815030621 0 1.8252574989159953 0 0.3252574989159953 0 [Q{I|L}][PA]D[EP]{M(Oxidation (M))|F};{[VA]|[{I|L}G]}A[PA]D[EP]{M(Oxidation (M))|F} 3.8399;3.5916 -;+ + 25 + NaN NaN 108292.8 NaN 3627 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5644 34.528 NaN 93201 35 0 21594 0.261 + -1 LMHLADTM 8 38 482.21700162887583 962.4194503245517 2 482.21661376953125 MULTI HCD FTMS 0 0 0 5641 17988.01171875 0.5143308918352071 8 -0.20611953735351562 3 2 Oxidation (M) _LM(Oxidation (M))HLADTM(Oxidation (M))_ REV__ENSG00000104154|ENST00000261867|SLC30A4;REV__ENST00000559667.2_1_15:45795141-45814405:-|nuORF 26.34127834903884 0.3999841173197873 1 AVT{M(Oxidation (M))|F} 4 -1 26.81 0 0 2.7857 0 0 526.220244857558 0 526.220244857558 0 13.622731327798547 0 0 0 0.4247425010840047 0 0 0 AVT{M(Oxidation (M))|F} 2.7857 - 55 + NaN NaN 107300.4 NaN 3628 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5645 34.532 NaN 111450 35 0 14374 0.261 -1 MLDILMDYCH 10 36 437.52355312281475 1309.5488299686442 3 437.52362060546875 MULTI HCD FTMS 0 0 0 5641 38178.515625 0.39666315446254874 -7 0.1759490966796875 4 Carbamidomethyl (C) _MLDILMDYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 5.783430956126388 0.4446910851847804 1 DPE 3 -1 30.005 0 0 2.2913 0 0 950.401640826928 0 950.401640826928 0 27.95371572735597 0 0 0 0.3807196863200844 0 0 0 DPE 2.2913 - 8 NaN NaN 97946.1 NaN 3629 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5646 34.535 NaN 100010 35 0 14044 0.261 -1 MPTRPVPSY 9 32 532.2656976249416 1062.516842316683 2 532.2655029296875 MULTI HCD FTMS 0 0 0 5641 34989.10546875 1 0 0 5 Oxidation (M) _M(Oxidation (M))PTRPVPSY_ ENSG00000164024|ENST00000296411|METAP1;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENST00000513199.5_1_4:99943548-99960531:+|nuORF 7.289230182591677 0.29575926068275815 1 {I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[EP] 6 -1 29.666 0 0 2.792 0 0 319.164354392775 0 319.164354392775 0 25.686362358410122 0 0 0 1.5 0 0.5 0 {I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[EP] 2.792 - 20 NaN NaN 102089.4 NaN 3630 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5647 34.538 NaN 38823 35 0 4113.1 0.261 + 5596 FLQLQWYL 8 31 555.8019328665739 1109.5893127999477 2 555.8023681640625 MULTI HCD FTMS 0 0 0 5641 11105.732421875 0.4479994220109512 5 -0.14297103881835938 6 Unmodified _FLQLQWYL_ REV__ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant;REV__ENSG00000187527|ENST00000342358|ATP13A5 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100432.2 NaN 3631 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5648 34.541 NaN 148620 35 0 11612 0.264 + -1 NSNCGGNMEPI 11 41 403.494520008022 1207.461730624266 3 403.8293151855469 MULTI HCD FTMS 0 0 0 5641 9596.8046875 0.5430266931138459 6 -0.17290496826171875 7 Carbamidomethyl (C),Oxidation (M) _NSNC(Carbamidomethyl (C))GGNM(Oxidation (M))EPI_ REV__FGD6|p.S205I|1|0.07|ENSG00000180263|chr12:95210670-95210670|C/A|missense_variant 1.3296431237094175 0.4130893034510334 1 {I|L} 1 -1 14.604 0 0 1.2095 0 0 1076.3668342393034 0 1076.3668342393034 0 7.614393726401687 0 0 0 0 0 0 0 {I|L} 1.2095 + + 13 + NaN NaN 104758 NaN 3632 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5649 34.545 NaN 20318 35 0 4456.2 0.261 + 25328 SDELFRTQDF 10 16 629.2897892984746 1256.565025663749 2 629.289794921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _SDELFRTQDF_ REV__ENSG00000134548|ENST00000256969|SPX 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84673 NaN 3633 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5650 34.548 NaN 36228 35 0 6480.8 0.264 + -1 PLLIAQTC 8 29 479.2580871582031 NaN 0 479.2580871582031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))PLLIAQTC(Carbamidomethyl (C))_ REV__AluJr4_dup4731|chr3:196323106-196323401:+|1.273920443483282|0.1655038402507707|2.94|507.0|14|1|anti-sense 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89215.1 NaN 3634 2014 5641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5652 34.553 NaN 908430 35 0 177420 0.327 + 25982 SPDSGVYEM 9 74 500.70017300012114 999.3857930670423 2 500.7001647949219 MULTI HCD FTMS 0 0 0 5651 398027.0625 0.7794498459412218 1 -0.03321075439453125 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 103.74828524460852 0.00396301343438984 1 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 84.153 0 0 8.4205 8.4205 97.669 0 0 0 8.569233304795034 65.20094414149064 8.569233304795034 84.15336906877748 0 2.6747425010840047 0 1.9604093769761874 0 [DP]SSGVYE{M(Oxidation (M))|F} 8.4205 - 494 NaN NaN 218036.8 NaN 3635 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5653 34.558 NaN 543980 35 0 107250 0.261 + 3899 EPQKEINSL 9 62 529.2797947313643 1056.5450365295285 2 529.2798461914062 MULTI HCD FTMS 0 0 0 5651 257864.859375 0.7107276114582203 2 -0.053081512451171875 2 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 45.69961567697781 0.039180348357221985 1 [EP]QKE{I|L}N{[TV]|[{I|L}S]} 9 0 + 48.795 0 0 4.6184 4.6184 85.603 0 0 0 12.67606240177031 17.50431147411433 12.67606240177031 9.208187539523749 0 0 0 1.416386562212267 0.6549471895720985 + + [EP]QKE{I|L}N{[TV]|[{I|L}S]};[EP][AG]KE{I|L}N{[TV]|[{I|L}S]};[EP]QKE{I|L}GG{[TV]|[{I|L}S]};[EP][AG]KE{I|L}GG{[TV]|[{I|L}S]};[EP]{[SA]|[TG]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}N{[TV]|[{I|L}S]} 4.6184;3.7469;3.127;2.2596;1.8967 +;-;-;-;- + 351 + NaN NaN 159523 NaN 3636 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5654 34.561 NaN 171340 35 0 30399 0.261 + 9689 HVTQEDFEM 9 37 576.2373454770075 1150.4601380208148 2 576.2374877929688 MULTI HCD FTMS 0 0 0 5651 102049.2734375 0.7219621676838492 8 -0.1927642822265625 3 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 74.19965305603844 0.007729275404663812 1 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 76.82 0 0 6.6774 6.6774 89.188 0 0 0 2.843181179205061 57.880325230808154 2.843181179205061 9.208187539523749 0 2.6989700043360187 0 0.4247425010840047 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[DP][RP]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.6774;5.877;5.3795 +;-;- + 145 NaN NaN 110513.5 NaN 3637 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5655 34.565 NaN 108380 35 0 16434 0.262 -1 SSGPVDPMM 9 34 476.6910442976 951.367535662 2 476.69097900390625 MULTI HCD FTMS 0 0 0 5651 33643.97265625 0.15950311759417674 39 -1.0527153015136719 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.2065171146312 0 427.2065171146312 0 22.43501263708417 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 3 NaN NaN 117674 NaN 3638 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5656 34.568 NaN 55797 35 0 5500.5 0.261 + -1 EPDVEIMKQ 9 36 552.7659068832946 1103.5172608333892 2 553.2666015625 MULTI HCD FTMS 0 0 0 5651 12585.955078125 0.1393155981624895 54 -1.433807373046875 5 Oxidation (M) _EPDVEIM(Oxidation (M))KQ_ REV__ENSG00000143772|ENST00000429204|ITPKB 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 10 NaN NaN 91193 NaN 3639 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5657 34.571 NaN 70207 35 0 12235 0.261 + 679 APTWYRRNY 9 25 613.8082475995104 1225.6019422658208 2 613.8080444335938 MULTI HCD FTMS 0 0 0 5651 12726.650390625 0.6562813578403779 1 -0.03321075439453125 6 Unmodified _APTWYRRNY_ REV__ENSG00000181143|ENST00000397910|MUC16 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112558.2 NaN 3640 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5658 34.575 NaN 105160 35 0 27041 0.261 -1 MRNYQFVI 8 28 564.7800095460094 1127.5454661588187 2 564.7798461914062 MULTI HCD FTMS 0 0 0 5651 19834.08203125 0.5572054290800872 -1 0.033267974853515625 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RNYQFVI_ ENST00000480453.5_1_2:46067625-46070169:+|nuORF 5.230669730166228 0.5342319408533849 1 V{I|L} 2 -1 25.217 0 0 2.2364 0 0 897.3826531063074 0 897.3826531063074 0 7.769250191953674 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.2364 + + 16 NaN NaN 94891.1 NaN 3641 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5659 34.578 NaN 238760 35 0 68000 0.264 + 17674 MAETLFWTPL 10 48 403.5376593746751 1207.5911487242254 3 403.5375671386719 MULTI HCD FTMS 0 0 0 5651 13912.5068359375 1 0 0 8 Unmodified _MAETLFWTPL_ ENSG00000108823|ENST00000262018|SGCA;nc|ENSG00000108823|Q16586-2|SGCA;SGCA|p.E96Rfs*9|1|0.38|ENSG00000108823|chr17:50167704-50167705|-/C|frameshift_variant 3.5964929083625545 0.45626689593999237 1 ND 2 10 20.969 0 0 1.7364 0 0 960.4979875265017 0 960.4979875265017 0 3.979400086720375 0 0 0 0 0 0 0 ND 1.7364 - 10 NaN NaN 118373.9 NaN 3642 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5660 34.581 NaN 18850 35 0 4523.9 0.261 + 10868 IVQKFWWAC 9 19 590.8031005859375 NaN 0 590.8031005859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _IVQKFWWAC_ ENST00000372630.2_1_20:44404187-44418535:-|nuORF;ENST00000372632.6_1_20:44404187-44418535:-|nuORF;ENST00000467679.5_1_20:44404187-44417641:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82524 NaN 3643 2015 5651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5662 34.587 NaN 1606200 35 0 550240 0.327 + 31939 VYPARTQTL 9 62 524.792955519735 1047.5713581062698 2 524.7930297851562 MULTI HCD FTMS 0 0 0 5661 618379.75 1 0 0 1 Unmodified _VYPARTQTL_ ENSG00000198502|ENST00000374975|HLA-DRB5 55.23464941255904 0.024247875903973527 1 VYPARTQT{I|L} 9 0 + 65.358 0 0 6.239 6.239 86.562 0 0 0 6.914339689053023 6.914339689053023 6.914339689053023 6.914339689053023 0 2.1479400086720375 2 0.4247425010840047 0 + + VYPARTQT{I|L};[YV]PARTQT{I|L};[YV]PART[AG]T{I|L} 6.239;5.579;4.7 +;+;- + 385 + NaN NaN 320640.3 NaN 3644 2016 5661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5663 34.591 NaN 192540 35 0 83420 0.261 + 30672 VPEEKAAEL 9 38 493.2637106780429 984.5128684228858 2 493.263671875 MULTI HCD FTMS 0 0 0 5661 102688.3203125 0.17010046251840885 8 -0.17946624755859375 2 Unmodified _VPEEKAAEL_ ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23 28.494509381512117 0.11816142465008336 1 VPEE 4 5 57.964 0 0 5.8876 0 0 0 527.2830904596311 527.2830904596311 36.99478448944497 0 0 0 0 0.8494850021680094 1.5228787452803376 0.3807196863200844 0 + VPEE 5.8876 + + 26 + NaN NaN 117825.6 NaN 3645 2016 5661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5664 34.595 NaN 97866 35 0 10346 0.261 -1 SADMSHVAL 9 35 473.7186701406204 945.4227873480409 2 473.7184753417969 MULTI HCD FTMS 0 0 0 5661 71494.3046875 0.44696546252497776 11 -0.25595855712890625 3 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 37.97399986684836 0.07464525285885698 1 VA{I|L} 3 -1 27.435 0 0 2.9019 0 0 644.2264881818375 0 644.2264881818375 0 1.0526595187979382 0 0 0 0.4247425010840047 0 0 0 VA{I|L} 2.9019 + + 18 NaN NaN 102597.7 NaN 3646 2016 5661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5665 34.598 NaN 30769 35 0 4812.4 0.261 -1 0 21 487.273722916821 486.266446450221 1 487.2746276855469 MULTI HCD FTMS 0 0 0 5661 8021.66748046875 0.64968092488914 1 -0.019870758056640625 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85455.9 NaN 3647 2016 5661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5666 34.601 NaN 8423.4 35 0 4322.7 0.261 + -1 QNEHHMGSSDE 11 6 643.7386956756768 NaN 0 643.7381591796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _QNEHHM(Oxidation (M))GSSDE_ REV__ENSG00000104067|ENST00000614355|TJP1;REV__nc|ENSG00000104067|Q07157-2|TJP1;REV__nc|ENSG00000104067|Q07157|TJP1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86488 NaN 3648 2016 5661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5668 34.607 NaN 1560000 35 0 174570 0.327 + 1518 AYVHMVTHF 9 106 560.7658100823496 1119.5170672314991 2 560.7660522460938 MULTI HCD FTMS 0 0 0 5667 813694.5625 0.9038123974160311 1 -0.033306121826171875 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 113.7 0 0 10.156 10.156 95.799 0 0 0 87.55063163131985 11.706962271689747 11.706962271689747 13.239087409443187 0 3.004432191740108 2 0.7614393726401688 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[YV]AH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN]AP{M(Oxidation (M))|F};AYV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};AYVH{M(Oxidation (M))|F}AA[PG]{[MG]|[TS]};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 10.156;8.9736;8.9126;6.1172;6.0421;5.7622;5.4811;5.295;5.1016;5.0918 +;-;+;-;-;-;-;-;-;- + 3845 + NaN NaN 314989.8 NaN 3649 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5669 34.611 NaN 207690 35 0 30396 0.261 -1 RYMEVSGNL 9 44 542.7582313804813 1083.5019098277626 2 542.7582397460938 MULTI HCD FTMS 0 0 0 5667 103851.6015625 0.5295098986008643 3 -0.08655548095703125 2 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 26.020703789607367 0.13554323117744113 1 EVSGN{I|L} 6 -1 56.146 0 0 5.1819 0 0 466.19801645730485 0 466.19801645730485 0 49.156687756324686 0 0 0 1.3494850021680094 0 0 0 EVSGN{I|L} 5.1819 + + 69 NaN NaN 114166.7 NaN 3650 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5670 34.615 NaN 83772 35 0 10277 0.261 + 27949 TETQALAQRTQ 11 37 623.8232071095631 1245.631861285926 2 623.8230590820312 MULTI HCD FTMS 0 0 0 5667 51860.60546875 0.031164548347677762 18 -0.4719276428222656 3 Unmodified _TETQALAQRTQ_ ENSG00000163060|ENST00000295201|TEKT4;ENST00000468063.1_1_2:95537336-95538738:+|nuORF 14.957161354070239 0.3267601744939039 1 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR 11 6 {[QD]|[EN]|[WG]|[KD]|[RS]} + + 69.659 2.2185 0.91249 5.5922 5.5922 62.604 0 0 0 0 58.68948444925195 0 0 0 2.504432191740108 0 0 0 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR 5.5922 - 138 + NaN NaN 96379 NaN 3651 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5671 34.618 NaN 199590 35 0 23489 0.264 -1 RYVRKFVLM 9 48 409.90567833389133 1226.695205601874 3 409.90606689453125 MULTI HCD FTMS 0 0 0 5667 45589.03125 0.433126053098467 11 -0.26264190673828125 4 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 1 {I|L}{M(Oxidation (M))|F} 2 -1 27.717 0 0 2.2594 0 0 948.5665528635453 0 948.5665528635453 0 2.654856465551987 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2594 + + 26 NaN NaN 108224 NaN 3652 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5672 34.621 NaN 74095 35 0 11602 0.261 + 11493 IYQRHVYNL 9 27 603.3249535321423 1204.6353541310846 2 603.3246459960938 MULTI HCD FTMS 0 0 0 5667 39706.8046875 0.7473679667512365 -2 0.053081512451171875 5 Unmodified _IYQRHVYNL_ ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 36.12702656103203 0.08312389501731911 1 VYN{I|L} 4 5 41.186 0 0 3.4189 0 0 697.3665638654312 0 697.3665638654312 0 30.94335023848103 0 0 0 0.9247425010840047 0 0 0 + VYN{I|L} 3.4189 + + 18 NaN NaN 93954.2 NaN 3653 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5673 34.625 NaN 168360 35 0 48649 0.262 + 15608 LPEDAGLSLE 10 38 522.2664894710291 1042.5184260088581 2 522.2666015625 MULTI HCD FTMS 0 0 0 5667 46684.9921875 0.17020065616219285 -7 0.19931793212890625 6 Unmodified _LPEDAGLSLE_ ENST00000316757.3_1_19:3760164-3761632:-|nuORF 18.1463463914782 0.3413772152514074 1 {I|L}PER 4 7 37.295 0 0 3.5774 0 0 0 544.2207735650999 544.2207735650999 30.305168975722765 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 {I|L}PER 3.5774 - 41 + NaN NaN 108682.8 NaN 3654 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5674 34.628 NaN 33302 35 0 5023.8 0.261 + 9427 HPVGFHPRHG 10 20 570.793758213508 1139.572963493816 2 570.7938232421875 MULTI HCD FTMS 0 0 0 5667 17603.185546875 0.7561099832214765 1 -0.033306121826171875 7 Unmodified _HPVGFHPRHG_ ENST00000374606.9_1_6:33257467-33257957:+|nuORF;ENST00000395131.5_1_6:33257384-33257957:+|nuORF 3.2813086475875832 0.45793521633868084 1 HPV 3 7 26.198 0 0 2.2989 0 0 0 803.3682345025999 803.3682345025999 22.21848749616356 0 0 0 0 0 0 0 0 + HPV 2.2989 + + 4 + NaN NaN 92053 NaN 3655 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5675 34.631 NaN 282110 35 0 67193 0.264 + 10365 IMDFQKWKL 9 44 403.5552025458826 NaN 0 403.5549621582031 PEAK HCD FTMS 0 0 0 5667 9307.0703125 0.6286192998058362 -2 0.053081512451171875 8 Unmodified _IMDFQKWKL_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 1.1933415558491238 0.28946407562688115 1 {M(Oxidation (M))|F} 1 8 2.4743 0 0 0.30732 0 0 419.9488622677433 235.08335291080314 655.0322151785465 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.30732 + + 1 + NaN NaN 117050.1 NaN 3656 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5676 34.635 NaN 52779 35 0 8528.5 0.261 -1 LPDDPAKTTM 10 32 552.7659068832946 1103.5172608333892 2 553.2680053710938 MULTI HCD FTMS 0 0 0 5667 15484.939453125 0.17140483888835129 56 -1.4869384765625 9 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 5.296884461304476 0.4472664531305844 1 {I|L}EES 4 -1 11.682 0 0 1.0587 0 0 0 642.2901705377561 642.2901705377561 11.682437647924218 0 0 0 0 0 0 0 0 {I|L}EES 1.0587 - 2 + NaN NaN 80690.6 NaN 3657 2017 5667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5678 34.64 NaN 207140 35 0 83803 0.327 + 31050 VSTVMCHLLGR 11 35 405.88405149855896 1214.630325095877 3 406.2313232421875 MULTI HCD FTMS 0 0 0 5677 1959.981201171875 0.1567273198507584 -7 0.20269393920898438 1 Unmodified _VSTVMCHLLGR_ REV__ENSG00000140107|ENST00000361529|SLC25A47 2.4347853303010236 0.4082425251555256 1 PA[K{I|L}]R 5 -1 17.447 0 0 1.4364 0 0 631.2503268025038 0 631.2503268025038 0 11.962724883926654 0 0 0 0 0 0 0 PA[K{I|L}]R 1.4364 - 13 + NaN NaN 108737.3 NaN 3658 2018 5677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5679 34.644 NaN 111380 35 0 36035 0.261 -1 CFWEECPPE 9 30 627.2331071416546 1252.4516613501091 2 627.2333984375 MULTI HCD FTMS 0 0 0 5677 80744.9453125 0.8551314491132669 5 -0.10637664794921875 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 1.844237919475145 0.33703635659052655 1 PPE 3 -1 21.682 0 0 1.7312 0 0 911.3088246076187 0 911.3088246076187 0 10.713337517843655 0 0 0 0 0 0 0 PPE 1.7312 + + 7 NaN NaN 90410.3 NaN 3659 2018 5677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5680 34.648 NaN 121320 35 0 13987 0.263 + -1 GDDLFGDEM 9 36 507.68966034694336 1013.3647677606867 2 507.6896667480469 MULTI HCD FTMS 0 0 0 5677 32291.908203125 0.4522082458098114 4 -0.08646392822265625 3 Oxidation (M) _GDDLFGDEM(Oxidation (M))_ REV__ENSG00000113742|ENST00000265085|CPEB4;REV__nc|ENSG00000113742|Q17RY0-2|CPEB4;REV__nc|ENSG00000113742|Q17RY0-3|CPEB4 15.847184025352803 0.2234401846867398 1 E{M(Oxidation (M))|F} 2 -1 33.583 0 0 3.3141 0 0 719.275913856193 0 719.275913856193 0 33.58349385648225 0 0 0 1 0 0.5 0 E{M(Oxidation (M))|F} 3.3141 + + 9 + NaN NaN 97385.2 NaN 3660 2018 5677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5681 34.651 NaN 77025 35 0 14859 0.261 + 5999 FPDRIDECP 9 35 546.2450052822049 1090.4754576312098 2 546.2449340820312 MULTI HCD FTMS 0 0 0 5677 37794.60546875 0.5604005077037687 25 -0.6646652221679688 4 Unmodified _FPDRIDECP_ nc|ENSG00000061938|Q07912-2|TNK2 27.628801355627647 0.12213550946336599 1 {M(Oxidation (M))|F}PDREEV{[CP]|[EA]} 9 3 + 50.736 0 0 4.6526 4.6526 87.583 0 0 0 43.74606867853579 7.147642715192504 7.147642715192504 13.393943874995166 0 0.805462187404089 0 0.3807196863200844 0 {M(Oxidation (M))|F}PDREEV{[CP]|[EA]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RD]{[ES]|[DT]|[{I|L}C]}DPE 4.6526;3.4244 -;- 53 + NaN NaN 103710.5 NaN 3661 2018 5677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5682 34.655 NaN 41708 35 0 7330.2 0.263 + 8512 HAGRFYKLYY 10 27 439.89578523720445 1316.6655263118134 3 439.89605712890625 MULTI HCD FTMS 0 0 0 5677 12959.5224609375 0.6364052928690367 1 -0.0233154296875 5 Unmodified _HAGRFYKLYY_ REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant 0.6976657623105312 0.47161084886498755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87448.8 NaN 3662 2018 5677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5683 34.658 NaN 162750 35 0 43903 0.261 -1 TDVICCVL 8 45 490.23154498696636 NaN 0 490.24517822265625 PEAK HCD FTMS 0 0 0 5677 8949.962890625 0.6285625125595744 -2 0.0531768798828125 6 2 Carbamidomethyl (C) _TDVIC(Carbamidomethyl (C))C(Carbamidomethyl (C))VL_ ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4;SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant 2.8892196856762586 0.38822285293237185 1 R 1 -1 6.9897 0 0 0.71437 0 0 577.4713164370203 241.8563631647094 819.3276796017296 0 0 0 0 0 0 0 0 0 R 0.71437 - 4 + NaN NaN 100423.9 NaN 3663 2018 5677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5685 34.663 NaN 726140 35 0 219380 0.327 + 24495 RYLEKPMEI 9 60 597.8131162390399 1193.6116795448797 2 597.8131103515625 MULTI HCD FTMS 0 0 0 5684 369075.875 0.482350334075742 6 -0.12628555297851562 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 84.5221896805406 0.004669506596793478 1 [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L} 9 0 + 75.474 0 0 6.3232 6.3232 91.418 0 0 0 4.6919646325935815 59.27616592881115 4.6919646325935815 19.235162698957282 0 1.6989700043360187 0 0.9049471895720985 0.6861818737241735 + + [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}T[VG]P{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[YK]RP{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[YK][VG]P{M(Oxidation (M))|F}E{I|L};[YR]{I|L}EAE[{I|L}V]{[DS]|[MA]|[CV]|TT};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EK{[QN]|[E{I|L}]|[KN]}[YR]{I|L};{[QN]|[E{I|L}]|[KN]}[YR]AE{I|L}V{[DS]|[MA]|[CV]|TT} 6.3232;4.7117;3.9274;3.0874;2.3159;2.2631;1.9584;1.6299 +;-;-;-;-;-;-;- + 760 NaN NaN 187676.3 NaN 3664 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5686 34.668 NaN 211340 35 0 18475 0.264 + 14044 KYVERIHYI 9 49 407.56428502600403 1219.6710256782121 3 407.56414794921875 MULTI HCD FTMS 0 0 0 5684 63415.40234375 0.8070863307599984 1 -0.029933929443359375 2 Unmodified _KYVERIHYI_ ENSG00000103415|ENST00000570646|HMOX2;nc|ENSG00000103415|P30519-2|HMOX2 19.256988751693697 0.19398022840297344 1 KY 2 7 21.211 0 0 1.7391 0 0 0 925.4913701368192 925.4913701368192 0.7660625688767198 0 0 0 0 0.3252574989159953 0 0 0 + KY 1.7391 + + 16 + NaN NaN 113112.7 NaN 3665 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5687 34.671 NaN 168640 35 0 29177 0.261 + 9334 HPSAHDVIL 9 40 494.7641636755087 987.5137744178174 2 494.7642517089844 MULTI HCD FTMS 0 0 0 5684 45659.70703125 0.2444279539165234 14 -0.35556793212890625 3 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 28.486842064014134 0.11819662193267319 1 {I|L}{I|L} 2 7 25.969 0 0 2.6297 0 0 743.3347891700835 0 743.3347891700835 0 9.158781176037891 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6297 + + 22 NaN NaN 108376 NaN 3666 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5688 34.675 NaN 96518 35 0 20432 0.261 + 3744 ENEELERPL 9 26 564.7800095460094 1127.5454661588187 2 564.76220703125 MULTI HCD FTMS 0 0 0 5684 21790.900390625 0.612178974709747 3 -0.06314849853515625 4 Unmodified _ENEELERPL_ ENSG00000047365|ENST00000303965|ARAP2 3.5964929083625545 0.32375295897743744 1 V{I|L} 2 8 20.969 0 0 1.8597 0 0 897.3835513479984 0 897.3835513479984 0 3.521825181113627 0 0 0 0 0 0 0 V{I|L} 1.8597 - 16 NaN NaN 106343.6 NaN 3667 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5689 34.678 NaN 77290 35 0 16476 0.261 -1 NADPQAVTM 9 33 481.71612515155437 961.4176973699088 2 481.7159118652344 MULTI HCD FTMS 0 0 0 5684 18360.466796875 0.012761270942226656 98 -2.5423851013183594 5 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 1 AVT{M(Oxidation (M))|F} 4 -1 49.68 0 0 5.1674 0 0 525.21684462715 0 525.21684462715 0 49.680475292681265 0 0 0 1.774227503252014 0 0 0 AVT{M(Oxidation (M))|F} 5.1674 + + 43 NaN NaN 92267.9 NaN 3668 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5690 34.681 NaN 26149 35 0 3649 0.261 -1 SGMCPPPGGM 10 20 511.6912181183282 1021.3678833034564 2 511.6914978027344 MULTI HCD FTMS 0 0 0 5684 18160.796875 0.34152682301417314 6 -0.12628555297851562 6 Carbamidomethyl (C),2 Oxidation (M) _SGM(Oxidation (M))C(Carbamidomethyl (C))PPPGGM(Oxidation (M))_ ARID1A|p.G1298Efs*15|1|0.07|ENSG00000117713|chr1:26773605-26773633|GGAAACATGAGCACTGGGGCCCCACAGCC/-|frameshift_variant;ARID1A|p.G922Afs*2|1|0.16|ENSG00000117713|chr1:26766249-26766249|G/-|frameshift_variant;ARID1A|p.V1271Efs*21|1|0.06|ENSG00000117713|chr1:26773433-26773434|-/AGGAAATG|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A 3.944395688203298 0.4544253912184634 1 SPD 3 -1 26.198 0 0 2.565 0 0 0 719.2323092096311 719.2323092096311 5.713337517843655 0 0 0 0 0 0 0 0 SPD 2.565 - 4 + NaN NaN 91909.5 NaN 3669 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5691 34.685 NaN 98213 35 0 12532 0.261 -1 SSGPVDPMM 9 39 476.6910442976 951.367535662 2 476.6910705566406 MULTI HCD FTMS 0 0 0 5684 33128.67578125 0.15706014039618618 43 -1.1647834777832031 7 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 1 D 1 -1 14.292 0 0 1.5022 0 0 409.1344271264315 424.1830974531466 833.317524579578 0 0 0 0 0 0.8807196863200843 0 0 0 D 1.5022 + + 7 + NaN NaN 97233.1 NaN 3670 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5692 34.688 NaN 46401 35 0 15485 0.261 -1 SYMTMRRC 8 23 568.7355584756111 1135.4565640180222 2 568.7354125976562 MULTI HCD FTMS 0 0 0 5684 15195.865234375 0.9070113977341627 3 -0.06314849853515625 8 Carbamidomethyl (C),2 Oxidation (M) _SYM(Oxidation (M))TM(Oxidation (M))RRC(Carbamidomethyl (C))_ ENST00000340941.10_1_5:70895511-70898337:+|nuORF 4.75600775471527 0.5349361699807423 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 112912.3 NaN 3671 2019 5684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5694 34.693 NaN 383730 35 0 46523 0.327 + 25983 SPDSGVYEM 9 68 500.70017300012114 999.3857930670423 2 500.7001647949219 MULTI HCD FTMS 0 0 0 5693 103234.234375 0.20216190219340607 6 -0.11298751831054688 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 78.14939416004806 0.006451203201226903 1 SRYE{M(Oxidation (M))|F} 5 5 55.146 0 0 5.518 0 0 299.1140167992673 0 299.1140167992673 0 42.292899161323604 0 0 0 1.9947026752325154 0 0.9247425010840047 0 SRYE{M(Oxidation (M))|F} 5.518 - 278 + NaN NaN 156508.3 NaN 3672 2020 5693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5695 34.698 NaN 170670 35 0 27856 0.261 + 7167 FSHPREPAL 9 38 527.2774158858034 1052.5402788384067 2 527.2772216796875 MULTI HCD FTMS 0 0 0 5693 33402.08984375 0.2878848540711322 3 -0.053127288818359375 2 Unmodified _FSHPREPAL_ ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1 21.536976647645854 0.1742816388551942 1 HC{I|L} 3 7 30.005 0 0 2.8507 0 0 681.3806779855437 0 681.3806779855437 0 13.551434250963936 0 0 0 0.3807196863200844 0 0 0 HC{I|L} 2.8507 - 22 NaN NaN 110237.1 NaN 3673 2020 5693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5696 34.701 NaN 338010 35 0 32762 0.262 -1 FPDPEKPCKMC 11 54 437.52355312281475 1309.5488299686442 3 437.5238342285156 MULTI HCD FTMS 0 0 0 5693 76627.90625 0.7961406177112329 -1 0.029933929443359375 3 Oxidation (M) _FPDPEKPCKM(Oxidation (M))C_ ENSG00000198356|ENST00000357332|GET3 14.170726826480097 0.3336124043171337 1 M{I|L}D 3 -1 49.909 0 0 3.8112 0 0 0 947.3781488058787 947.3781488058787 24.847594070116017 0 0 0 0 0.9247425010840047 1.3979400086720375 0.3494850021680094 0 M{I|L}D 3.8112 - 56 + NaN NaN 136823.2 NaN 3674 2020 5693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5697 34.704 NaN 329570 35 0 87603 0.261 + 120 AEAASLLHH 9 47 474.7485857689037 947.4826186046074 2 474.7483825683594 MULTI HCD FTMS 0 0 0 5693 118239.1328125 0.521764214675788 -3 0.08655548095703125 4 Unmodified _AEAASLLHH_ REV__ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant;REV__ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;REV__ENSG00000073331|ENST00000650871|ALPK1;REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF;REV__nc|ENSG00000073331|Q96QP1-2|ALPK1 25.399314129420986 0.14091189997036632 1 {[CP]|[EA]}AAVGG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]} 10 -1 + 54.345 0 0 5.7357 5.7357 84.992 0 0 0 37.80271844005476 6.633483580301906 6.633483580301906 5.013487579716767 0 1.8481362441963327 0 0 0 {[CP]|[EA]}AAVGG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}AAVN{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}AARG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[Q{I|L}]GG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[Q{I|L}]N{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]} 5.7357;5.2066;4.6445;2.5814;2.0579 -;-;-;-;- 225 + NaN NaN 152717.9 NaN 3675 2020 5693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5698 34.708 NaN 15403 35 0 3438.6 0.261 + 9711 HVVSLVHRSLE 11 16 638.3623334369884 1274.7101139407766 2 638.864013671875 MULTI HCD FTMS 0 0 0 5693 7869.33837890625 0.9663294571800474 1 -0.019927978515625 5 Unmodified _HVVSLVHRSLE_ DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant;ENSG00000130158|ENST00000294618|DOCK6 0.40826533853263924 0.41713015341995335 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92498.2 NaN 3676 2020 5693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5700 34.713 NaN 130830 35 0 23481 0.327 + 9690 HVTQEDFEM 9 36 576.2373454770075 1150.4601380208148 2 576.2373046875 MULTI HCD FTMS 0 0 0 5699 72830.5703125 0.515250277099392 14 -0.3654441833496094 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 57.24910588100465 0.021429789259086996 1 QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 72.868 0 0 6.3338 0 0 337.1781688819461 0 337.1781688819461 0 68.26396914916351 0 0 0 2.8494850021680094 0 0.7742275032520141 0 + QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.3338 + + 72 + NaN NaN 105980.7 NaN 3677 2021 5699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5701 34.718 NaN 117180 35 0 22467 0.261 + 3900 EPQKEINSL 9 38 529.2797947313643 1056.5450365295285 2 529.2796630859375 MULTI HCD FTMS 0 0 0 5699 41622.0859375 0.11471887171430589 8 -0.1893310546875 2 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 8.745405648335112 0.2847203663274469 1 N{[TV]|[{I|L}S]} 3 6 11.695 0 0 1.1069 0 0 724.3760457672953 0 724.3760457672953 0 0.7255998297264217 0 0 0 0 0 0.4247425010840047 0 + N{[TV]|[{I|L}S]} 1.1069 + + 50 + NaN NaN 103493.4 NaN 3678 2021 5699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5702 34.721 NaN 43973 35 0 7707.6 0.261 + 2077 DERTGSRSR 9 30 532.2656976249416 1062.516842316683 2 532.2662963867188 MULTI HCD FTMS 0 0 0 5699 11315.04296875 0.3233876035743715 7 -0.156158447265625 3 Unmodified _DERTGSRSR_ REV__ENST00000510379.1_1_4:148653256-148653571:+|nuORF 2.9952420565917617 0.3283108881486655 1 E 1 -1 11.99 0 0 1.1284 0 0 501.2253249947998 429.22361169986567 930.4489366946655 0 0 0 0 0 0.5 0 0 0 E 1.1284 + + 4 + NaN NaN 94653.5 NaN 3679 2021 5699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5704 34.726 NaN 581310 35 0 184140 0.327 + 31940 VYPARTQTL 9 50 524.792955519735 1047.5713581062698 2 524.7927856445312 MULTI HCD FTMS 0 0 0 5703 224040.078125 0.362301770271423 6 -0.14287185668945312 1 Unmodified _VYPARTQTL_ ENSG00000198502|ENST00000374975|HLA-DRB5 33.4449034751529 0.0954363425218424 1 [YV]MV 4 7 38.188 0 0 3.6453 0 0 0 552.3073254737104 552.3073254737104 15.796896906561031 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]MV 3.6453 - 66 NaN NaN 183854 NaN 3680 2022 5703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5705 34.731 NaN 331650 35 0 25266 0.261 + 18970 NAMEDAQTL 9 70 504.7187520694872 1007.4229512057744 2 504.71881103515625 MULTI HCD FTMS 0 0 0 5703 82569.921875 0.5961344539142287 -6 0.13964080810546875 2 Oxidation (M) _NAM(Oxidation (M))EDAQTL_ ENSG00000196975|ENST00000394295|ANXA4;nc|ENSG00000196975|P09525|ANXA4 49.52724829834842 0.03223213920720493 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDAQT{I|L} 9 0 + 67.368 0 0 6.6872 6.6872 89.2 0 0 0 10.70107520596089 16.478174818886373 10.70107520596089 9.208187539523749 0 1.110924374808178 1.3979400086720375 0.3252574989159953 0.5484550065040282 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDAQT{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDA[AG]T{I|L};[TA]C(Carbamidomethyl (C))EDAQT{I|L};[TA][CG]EDAQT{I|L};[TA]C(Carbamidomethyl (C))EDA[AG]T{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDAV{[QD]|[EN]|[WG]|[KD]|[RS]};[TA][CG]EDA[AG]T{I|L};[TA]C(Carbamidomethyl (C))EDAV{[QD]|[EN]|[WG]|[KD]|[RS]};[TA][CG]EDAV{[QD]|[EN]|[WG]|[KD]|[RS]} 6.6872;5.7731;5.6249;4.7109;4.4387;3.5541;3.529;2.4919;1.5779 +;-;-;-;-;-;-;-;- + 351 NaN NaN 135690 NaN 3681 2022 5703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5706 34.734 NaN 40605 35 0 5449.3 0.261 + -1 LQARLYSLM 9 30 555.8019328665739 1109.5893127999477 2 555.802490234375 MULTI HCD FTMS 0 0 0 5703 10904.16015625 0.4398681025208863 13 -0.3521575927734375 3 Oxidation (M) _LQARLYSLM(Oxidation (M))_ REV__ENSG00000154237|ENST00000388948|LRRK1 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92297.4 NaN 3682 2022 5703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5707 34.738 NaN 27786 35 0 3661.1 0.261 -1 CLICCAVLFVM 11 16 636.306751655863 1270.5989503785258 2 636.8084716796875 MULTI HCD FTMS 0 0 0 5703 2271.42041015625 0.18020231262014955 -4 0.08646392822265625 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))LICCAVLFVM_ ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3 1.4819007175156935 0.4124215533673021 1 VM 2 -1 20.969 0 0 1.6503 0 0 1022.4778979179492 0 1022.4778979179492 0 15.484550065040281 0 0 0 0 0 0 0 VM 1.6503 + + 3 NaN NaN 89192.9 NaN 3683 2022 5703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5708 34.741 NaN 13431 35 0 4084 0.261 + 30305 VKRKKKKKK 9 14 585.9290678959052 NaN 0 586.3089599609375 PEAK HCD FTMS 0 0 0 5703 2508.94775390625 0.46107446886692416 -1 0.013286590576171875 5 Unmodified _VKRKKKKKK_ ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87502.9 NaN 3684 2022 5703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5710 34.746 NaN 1089700 35 0 114280 0.327 + 1519 AYVHMVTHF 9 97 560.7657107079392 1119.5168684826783 2 560.7658081054688 MULTI HCD FTMS 0 0 0 5709 477257.84375 0.4193724882549075 -4 0.08306121826171875 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 108.71 0 0 9.7108 9.7108 91.494 0 0 0 77.52610700755433 11.962724883926654 11.962724883926654 6.110469015915783 0 3.079689690656103 2 0.2614393726401688 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};AYV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AP{[QC]|[C(Carbamidomethyl (C))A]}A{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};[HV]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F} 9.7108;9.165;8.6399;5.7755;5.6934;4.9916;4.7178;4.6225;4.4554;4.422 +;+;-;-;-;-;-;-;-;- + 2536 + NaN NaN 242360 NaN 3685 2023 5709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5711 34.751 NaN 61768 35 0 9262.5 0.261 -1 RYMEVSGNL 9 22 542.7582313804813 1083.5019098277626 2 542.7582397460938 MULTI HCD FTMS 0 0 0 5709 41114.234375 0.20962983475855743 9 -0.24266815185546875 2 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 8.155526934196011 0.2891920862272901 1 S[NG]{I|L} 4 -1 21.198 0 0 1.9564 0 0 694.3115337812173 0 694.3115337812173 0 21.197887582883936 0 0 0 0.5 0 0 0 S[NG]{I|L} 1.9564 + + 4 NaN NaN 90388.7 NaN 3686 2023 5709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5712 34.754 NaN 39032 35 0 5489 0.261 + 31080 VTESANQLTQR 11 28 623.8232071095631 1245.631861285926 2 623.8230590820312 MULTI HCD FTMS 0 0 0 5709 22337.46484375 0.01342323323832143 24 -0.6546401977539062 3 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 8.444304893310646 0.381886813817475 1 TAAQ{I|L} 5 -1 35.701 0 0 2.8661 0 0 358.1545186119011 400.19333826236567 758.3478568742668 0 0 0 0 0 0.9247425010840047 0 0 0 TAAQ{I|L} 2.8661 - 27 + NaN NaN 83952.3 NaN 3687 2023 5709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5713 34.758 NaN 30173 35 0 5896.1 0.261 + 3031 EADRTAIHEVM 11 13 636.306751655863 1270.5989503785258 2 636.3058471679688 MULTI HCD FTMS 0 0 0 5709 10120.3095703125 0.560881583224466 -4 0.08306121826171875 4 Unmodified _EADRTAIHEVM_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 2.282774691075616 0.408909192180357 1 VM 2 9 20.969 0 0 1.6503 0 0 1022.475925897783 0 1022.475925897783 0 20.969100130080562 0 0 0 0 0 0 0 + VM 1.6503 + + 1 NaN NaN 86900.2 NaN 3688 2023 5709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5714 34.761 NaN 22134 35 0 4262.6 0.261 + 32461 WECLKEELQ 9 16 589.2806560289634 NaN 0 589.2805786132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _WECLKEELQ_ REV__ENSG00000184178|ENST00000401642|SCFD2;REV__nc|ENSG00000184178|Q8WU76-2|SCFD2 1.4819007175156935 0.28806575819904134 1 {I|L}T 2 -1 10.969 0 0 0.93231 0 0 418.1195873491393 541.2749727838499 959.3945601329892 0 0 0 0 0 0 0 0 0 {I|L}T 0.93231 - 4 + NaN NaN 80432.5 NaN 3689 2023 5709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5716 34.766 NaN 540960 35 0 186490 0.327 + 15661 LPEKEGEEL 9 56 522.2664894710291 1042.5184260088581 2 522.266357421875 MULTI HCD FTMS 0 0 0 5715 274293.84375 1 0 0 1 Unmodified _LPEKEGEEL_ ENSG00000177469|ENST00000357037|CAVIN1 63.227496030279354 0.01306643085373406 1 [{I|L}P]EKEGEE{I|L} 9 0 + 73.872 0 0 7.0859 7.0859 92.051 0 0 0 7.853350071374621 36.99478448944497 7.853350071374621 14.208187539523749 0 1.4247425010840047 1.5228787452803376 1.2614393726401687 0 + + [{I|L}P]EKEGEE{I|L};[{I|L}P][SG]{I|L}EGEE{I|L};{[QN]|[E{I|L}]|[KN]}PKEGEE{I|L};[EP]{I|L}KEGEE{I|L};[EP]K{I|L}EGEE{I|L};[VP]{[SA]|[TG]}{I|L}EGEE{I|L} 7.0859;5.723;5.4343;4.6236;4.144;3.2608 +;-;-;-;-;- + 506 NaN NaN 160684.4 NaN 3690 2024 5715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5717 34.771 NaN 608880 35 0 105670 0.261 + 27507 TAADDSSVKL 10 68 503.75622231357596 1005.4978916939519 2 503.7563171386719 MULTI HCD FTMS 0 0 0 5715 242504.265625 0.21172685587875467 -4 0.07304000854492188 2 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 66.68293810318366 0.021515761494065467 1 TAADDSSVK{I|L} 10 0 + 90.614 0 0 9.0119 9.0119 92.114 0 0 0 9.124628150806373 9.124628150806373 9.124628150806373 9.124628150806373 0 3.024227503252014 1.6989700043360187 0.3807196863200844 0.2742275032520141 + + TAADDSSVK{I|L};[TA]ADDSSVK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDSSVK{I|L} 9.0119;8.1044;5.2678 +;+;- + 171 + NaN NaN 175327 NaN 3691 2024 5715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5718 34.774 NaN 152010 35 0 20153 0.262 + -1 PVLKRFHALM 10 47 409.90567833389133 1226.695205601874 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5715 42230.6875 0.4012195586303398 18 -0.5117340087890625 3 Oxidation (M) _PVLKRFHALM(Oxidation (M))_ REV__ENSG00000166747|ENST00000299980|AP1G1 6.630372943996041 0.44020808660041416 1 KP{M(Oxidation (M))|F} 3 -1 24.922 0 0 2.0316 0 0 836.4973329076846 0 836.4973329076846 0 3.2390874094431865 0 0 0 0.5 0 0 0 KP{M(Oxidation (M))|F} 2.0316 - 50 + NaN NaN 104045.6 NaN 3692 2024 5715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5719 34.778 NaN 110890 35 0 26521 0.261 -1 0 38 416.22775484842754 415.22047838182755 1 416.2278137207031 MULTI HCD FTMS 0 0 0 5715 39302.3984375 0.11641769278027567 -101 2.4476242065429688 4 NaN NaN 1 M 1 -1 13.979 0 0 3.3667 0 0 266.16972567362285 0 266.16972567362285 0 13.979400086720375 0 0 0 0 0 0 0 M 3.3667 - 3 + NaN NaN 96148.9 NaN 3693 2024 5715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5720 34.781 NaN 38947 35 0 5660.3 0.261 + 11494 IYQRHVYNL 9 26 603.3249535321423 1204.6353541310846 2 603.3252563476562 MULTI HCD FTMS 0 0 0 5715 16478.251953125 0.310156351153045 5 -0.13621902465820312 5 Unmodified _IYQRHVYNL_ ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 6.723162845929126 0.3000504726104499 1 DYV 3 7 16.198 0 0 1.3446 0 0 130.10584862381876 694.3391207330686 824.4449693568874 0 0 0 0 0 0 0 0 0 DYV 1.3446 - 9 + NaN NaN 84843 NaN 3694 2024 5715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5721 34.784 NaN 90044 35 0 13466 0.263 + 28458 TPLVDPGAPS 10 39 477.25049991780867 952.4864469024174 2 477.2502136230469 MULTI HCD FTMS 0 0 0 5715 8592.1630859375 0.4627007466634692 3 -0.0764923095703125 6 Unmodified _TPLVDPGAPS_ REV__ENSG00000136848|ENST00000408936|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-5|DAB2IP 1.4819007175156935 0.4674597685733628 1 D 1 -1 5.4846 0 0 0.57581 0 0 428.325595730458 406.1116520617484 834.4372477922063 0 0 0 0 0 0 0 0 0 D 0.57581 + + 2 + NaN NaN 108736.5 NaN 3695 2024 5715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5723 34.79 NaN 66437 35 0 21719 0.326 -1 CFWEECPPE 9 23 627.2331071416546 1252.4516613501091 2 627.2337036132812 MULTI HCD FTMS 0 0 0 5722 52334.46875 0.5542495561493972 12 -0.3455162048339844 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 1.844237919475145 0.33703635659052655 1 PE 2 -1 20.969 0 0 1.6742 0 0 1008.36614142251 0 1008.36614142251 0 13.979400086720375 0 0 0 0 0 0 0 PE 1.6742 + + 3 NaN NaN 81335.8 NaN 3696 2025 5722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5724 34.794 NaN 273180 35 0 25879 0.263 + -1 VPKIPKEM 8 63 500.28164145458516 998.5487299759703 2 500.7826843261719 MULTI HCD FTMS 0 0 0 5722 53319.05859375 0.7891326193702446 -2 0.043224334716796875 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VPKIPKEM(Oxidation (M))_ REV__ENSG00000145626|ENST00000274278|UGT3A1;REV__ENSG00000168671|ENST00000282507|UGT3A2;REV__nc|ENSG00000145626|Q6NUS8-2|UGT3A1;REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2;REV__UGT3A1|p.G269R|1|0.19|ENSG00000145626|chr5:35965424-35965424|C/T|missense_variant 8.593279151180031 0.5292430274356741 1 YE{M(Oxidation (M))|F} 3 -1 34.253 0 0 3.4302 0 0 541.39728273563 0 541.39728273563 0 10.951753372113018 0 0 0 0 0 0.805462187404089 0 YE{M(Oxidation (M))|F} 3.4302 - 212 + NaN NaN 134258.7 NaN 3697 2025 5722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5725 34.798 NaN 110890 35 0 13959 0.261 + 1502 AYVEKVEKL 9 33 539.8106694392145 1077.606785945229 2 539.8106689453125 MULTI HCD FTMS 0 0 0 5722 37221.81640625 0.4357742761794708 -4 0.07642364501953125 3 Unmodified _AYVEKVEKL_ ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1 27.628801355627647 0.12213550946336599 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3 6 36.695 0 0 3.4052 0 0 0 741.4156155905599 741.4156155905599 25.268024924119672 0 0 0 0 0.7742275032520141 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3.4052 + + 58 + NaN NaN 96619.1 NaN 3698 2025 5722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5726 34.801 NaN 22278 35 0 3282.1 0.261 + -1 RNMITLYHL 9 15 588.8148429149387 1175.6151328966773 2 588.814697265625 MULTI HCD FTMS 0 0 0 5722 6085.697265625 0.3356454935228419 -4 0.07642364501953125 4 Oxidation (M) _RNM(Oxidation (M))ITLYHL_ REV__ENSG00000221840|ENST00000319760|OR4A5 4.3292370932331545 0.3181982124262546 1 {I|L}T 2 -1 9.464 0 0 0.80502 0 0 417.1885714726523 541.2741793268186 958.462750799471 0 0 0 0 0 0 0 0 0 {I|L}T 0.80502 + + 4 + NaN NaN 88141.6 NaN 3699 2025 5722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5728 34.806 NaN 315280 35 0 104020 0.327 + -1 IEMPKELYR 9 38 597.8131162390399 1193.6116795448797 2 597.8130493164062 MULTI HCD FTMS 0 0 0 5727 154062.03125 0.2013457862609549 13 -0.3920478820800781 1 Oxidation (M) _IEM(Oxidation (M))PKELYR_ REV__ENSG00000168610|ENST00000264657|STAT3;REV__nc|ENSG00000168610|P40763-2|STAT3;REV__nc|ENSG00000168610|P40763-3|STAT3 20.41453444215458 0.18397929046831515 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}KE[YR]{I|L} 9 -1 + 27.145 0 0 2.2742 2.2742 84.962 0 0 0 7.147642715192507 8.816913459506853 7.147642715192507 11.280994675737762 0 0.2742275032520141 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}KE[YR]{I|L};{[QN]|[E{I|L}]|[KN]}TPK[MT]{[{M(Oxidation (M))|F}D]|MM}{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PE[YR]{I|L} 2.2742;1.329;0.82567 -;-;- 145 NaN NaN 128044.7 NaN 3700 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5729 34.811 NaN 149220 35 0 12139 0.264 + 14045 KYVERIHYI 9 51 407.56428502600403 1219.6710256782121 3 407.5641784667969 MULTI HCD FTMS 0 0 0 5727 42903.2734375 0.5460289496953331 8 -0.24251556396484375 2 Unmodified _KYVERIHYI_ ENSG00000103415|ENST00000570646|HMOX2;nc|ENSG00000103415|P30519-2|HMOX2 10.823927491677226 0.26684000660059787 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K 3 8 19.705 0 0 1.6156 0 0 0 794.3903292291624 794.3903292291624 15.100906146684924 0 0 0 0 0.5 0 0 0.4247425010840047 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K 1.6156 - 6 + NaN NaN 121534.1 NaN 3701 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5730 34.814 NaN 104510 35 0 16252 0.261 + 20294 NYNNQSSNF 9 36 544.2256976528644 1086.4368423725286 2 544.2257080078125 MULTI HCD FTMS 0 0 0 5727 64187.6484375 0.7528586754849403 -2 0.039947509765625 3 Unmodified _NYNNQSSNF_ chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1 27.223235318498237 0.1251536255799991 1 SSN{M(Oxidation (M))|F} 4 5 52.735 0 0 4.8539 0 0 633.2507931155399 0 633.2507931155399 0 52.735097166722156 0 0 0 2 0 0 0.3807196863200844 + SSN{M(Oxidation (M))|F} 4.8539 + + 32 NaN NaN 109229.2 NaN 3702 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5731 34.817 NaN 149450 35 0 20060 0.261 + 25509 SFHTLVRE 8 45 494.7641636755087 987.5137744178174 2 495.75372314453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SFHTLVRE_ REV__ENSG00000146005|ENST00000274710|PSD2 9.347437153973935 0.5250182646323369 1 {[ES]|[DT]|[{I|L}C]}A 3 -1 10.458 0 0 1.059 0 0 0 697.3638921849382 697.3638921849382 0 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}A 1.059 - 13 NaN NaN 118567.4 NaN 3703 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5732 34.821 NaN 98178 35 0 15437 0.261 -1 VDCGTEETSL 10 26 555.734440943786 1109.454328954372 2 555.7346801757812 MULTI HCD FTMS 0 0 0 5727 38820.4609375 0.249691040552906 -18 0.43543243408203125 5 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 13.042465956692817 0.38911719078024076 1 TS{I|L} 3 -1 37.435 0 0 3.3742 0 0 790.2829457013687 0 790.2829457013687 0 27.703037561203843 0 0 0 0.9247425010840047 0 0.5 0 TS{I|L} 3.3742 + + 10 NaN NaN 96503 NaN 3704 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5733 34.824 NaN 66213 35 0 15964 0.261 -1 NADPQAVTM 9 21 481.71612515155437 961.4176973699088 2 481.7159423828125 MULTI HCD FTMS 0 0 0 5727 26327.83984375 0.018298919155303187 105 -2.7907562255859375 6 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 8.155526934196011 0.2891920862272901 1 V[{M(Oxidation (M))|F}T] 3 -1 20.458 0 0 2.1279 0 0 596.2555707603369 0 596.2555707603369 0 20.457574905606748 0 0 0 1 0 0 0 V[{M(Oxidation (M))|F}T] 2.1279 + + 10 + NaN NaN 88159.4 NaN 3705 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5734 34.827 NaN 96960 35 0 12248 0.261 -1 SSGPVDPMM 9 30 476.6910442976 951.367535662 2 476.6908264160156 MULTI HCD FTMS 0 0 0 5727 17950.62109375 0.08510231703190456 50 -1.3669815063476562 7 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 1 V[SG]D[YV]{M(Oxidation (M))|F} 7 -1 21.471 0 0 2.2568 0 0 166.00130697510036 0 166.00130697510036 0 21.470544657224835 0 0 0 0.8494850021680094 0 0 0 V[SG]D[YV]{M(Oxidation (M))|F} 2.2568 - 18 + NaN NaN 99943.1 NaN 3706 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5735 34.831 NaN 30442 35 0 5865.9 0.261 + -1 NSYEMMMHV 9 20 587.2214531777892 1172.4283534223782 2 587.2213745117188 MULTI HCD FTMS 0 0 0 5727 12347.9384765625 1 0 0 8 2 Oxidation (M) _NSYEM(Oxidation (M))M(Oxidation (M))MHV_ REV__QRFPR|p.I296M|1|0.25|ENSG00000186867|chr4:121330433-121330433|A/C|missense_variant 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88668 NaN 3707 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5736 34.834 NaN 41170 35 0 5619 0.261 + 34706 YPVEHPDKF 9 24 566.2763402767953 1130.5381276203905 2 566.2750854492188 MULTI HCD FTMS 0 0 0 5727 8872.1015625 0.39480947956601964 -2 0.039947509765625 9 Unmodified _YPVEHPDKF_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 8.155526934196011 0.2891920862272901 1 K{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8548 0 0 837.3663197248062 0 837.3663197248062 0 20.969100130080562 0 0 0 0 0 0 0 + K{M(Oxidation (M))|F} 1.8548 + + 1 NaN NaN 100585.8 NaN 3708 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5737 34.837 NaN 24890 35 0 4534.2 0.261 + 18504 MRPVHWLVC 9 15 570.793758213508 1139.572963493816 2 570.794921875 MULTI HCD FTMS 0 0 0 5727 9627.8681640625 0.4135460151006711 10 -0.2956047058105469 10 Unmodified _MRPVHWLVC_ REV__ENST00000371730.6_1_1:51934182-51934233:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91089.4 NaN 3709 2026 5727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5739 34.843 NaN 332960 35 0 73199 0.327 + 22576 QSRQTFSISSM 11 56 424.53979903354985 1270.5975677008496 3 424.5399169921875 MULTI HCD FTMS 0 0 0 5738 81818.0546875 0.9828322905682659 1 -0.026554107666015625 1 Unmodified _QSRQTFSISSM_ ENSG00000172232|ENST00000233997|AZU1 7.608950283845883 0.38555039536024605 1 M 1 10 18.979 0 0 1.4937 0 0 1121.5465555932308 0 1121.5465555932308 0 3.4948500216800937 0 0 0 0.3494850021680094 0 0 0 + M 1.4937 + + 22 + NaN NaN 131006.3 NaN 3710 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5740 34.847 NaN 251710 35 0 19597 0.261 + -1 VPKIPKEM 8 62 500.28164145458516 998.5487299759703 2 500.782958984375 MULTI HCD FTMS 0 0 0 5738 67566.6640625 1 0 0 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VPKIPKEM(Oxidation (M))_ REV__ENSG00000145626|ENST00000274278|UGT3A1;REV__ENSG00000168671|ENST00000282507|UGT3A2;REV__nc|ENSG00000145626|Q6NUS8-2|UGT3A1;REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2;REV__UGT3A1|p.G269R|1|0.19|ENSG00000145626|chr5:35965424-35965424|C/T|missense_variant 8.593279151180031 0.5292430274356741 1 YE{M(Oxidation (M))|F} 3 -1 28.121 0 0 2.8162 0 0 541.3974525850668 0 541.3974525850668 0 16.058400359968044 0 0 0 0 0 0.6694451763165201 0 YE{M(Oxidation (M))|F} 2.8162 - 106 + NaN NaN 120018.4 NaN 3711 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5741 34.851 NaN 81423 35 0 16789 0.261 + 7932 GDGWTRALL 9 30 494.7641636755087 987.5137744178174 2 494.763916015625 MULTI HCD FTMS 0 0 0 5738 38429.375 0.20572215881963452 22 -0.6213340759277344 3 Unmodified _GDGWTRALL_ REV__ENST00000610134.1_1_2:73340392-73340617:+|nuORF 9.38312468134398 0.279288223203164 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6297 0 0 743.334240367561 0 743.334240367561 0 20.48455006504028 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6297 + + 3 NaN NaN 99469 NaN 3712 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5742 34.854 NaN 46003 35 0 7684.6 0.261 + -1 CWSCNFTL 8 27 515.7098095208519 1029.4050661085037 2 515.7096557617188 MULTI HCD FTMS 0 0 0 5738 11739.51953125 0.6573750687108693 2 -0.059726715087890625 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))WSCNFTL_ REV__ENSG00000161381|ENST00000315392|PLXDC1;REV__ENST00000394318.7_1_17:37235696-37307690:-|nuORF;REV__ENST00000493200.5_1_17:37235696-37288242:-|nuORF;REV__ENST00000578517.5_1_17:37235696-37309234:-|nuORF;REV__nc|ENSG00000161381|Q8IUK5-2|PLXDC1;REV__nc|ENSG00000161381|Q8IUK5-3|PLXDC1;REV__nc|ENSG00000161381|Q8IUK5-4|PLXDC1 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 87670.6 NaN 3713 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5743 34.857 NaN 31137 35 0 5159.4 0.261 + -1 AMVVTMLALL 10 19 547.3035402903926 1092.592527647585 2 547.3043212890625 MULTI HCD FTMS 0 0 0 5738 18330.482421875 0.9453584778704369 3 -0.08299636840820312 5 2 Oxidation (M) _AM(Oxidation (M))VVTM(Oxidation (M))LALL_ REV__ENSG00000160013|ENST00000291294|PTGIR;REV__ENST00000595460.1_1_19:47126615-47127509:-|nuORF 1.844237919475145 0.46554186016084764 1 V{[CP]|[EA]} 3 -1 10.458 0 0 0.95713 0 0 775.4513666141851 0 775.4513666141851 0 4.771212547196626 0 0 0 0 0 0 0 V{[CP]|[EA]} 0.95713 - 9 + NaN NaN 80052.3 NaN 3714 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5744 34.861 NaN 125720 35 0 15168 0.261 + 24517 RYLEKSGVL 9 44 532.8084616406329 1063.6023703480657 2 532.8074951171875 MULTI HCD FTMS 0 0 0 5738 38520.58984375 0.31137780687806177 -3 0.0764923095703125 6 Unmodified _RYLEKSGVL_ ENSG00000214114|ENST00000397572|MYCBP;ENST00000495043.5_1_1:39330344-39338774:-|nuORF 18.373094154950223 0.20161688160436167 1 [YR]{I|L}EKSG 7 2 34.213 0 0 3.2167 0 0 0 227.13385993296347 227.13385993296347 16.02523206350085 0 0 0 0 0.4247425010840047 0 0 0 + [YR]{I|L}EKSG 3.2167 + + 91 NaN NaN 98169.3 NaN 3715 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5745 34.864 NaN 44212 35 0 6490.6 0.261 + 5017 FCVLWSSFN 9 28 551.7545369238668 1101.4945209145335 2 551.7532958984375 MULTI HCD FTMS 0 0 0 5738 5937.6767578125 0.05909575342004548 -21 0.5083694458007812 7 Unmodified _FCVLWSSFN_ REV__ENST00000448963.5_1_10:91598703-91598907:+|nuORF 1.4819007175156935 0.3397831423917744 1 S 1 -1 6.9897 0 0 0.63457 0 0 648.3088347346492 363.1306551568969 1011.4394898915461 0 0 0 0 0 0 0 0 0 S 0.63457 + + 2 + NaN NaN 91206.8 NaN 3716 2027 5738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5747 34.869 NaN 603580 35 0 75251 0.327 + 35155 YVHMVTHF 8 62 525.2471958661686 1048.479838799137 2 525.2472534179688 MULTI HCD FTMS 0 0 0 5746 119762.03125 0.8278591104605648 1 -0.033172607421875 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 98.80718514221951 0.03801807386884047 1 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 86.112 0 0 8.2131 8.2131 95.734 0 0 0 3.411290632962718 3.411290632962718 3.411290632962718 30.48455006504028 0 2.6549471895720984 2 0.6989700043360187 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F} 8.2131;5.3056;5.2338 +;-;- + 297 NaN NaN 173289.2 NaN 3717 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5748 34.874 NaN 202080 35 0 55157 0.261 + 19175 NIDVNRFA 8 41 474.7485857689037 947.4826186046074 2 474.7485046386719 MULTI HCD FTMS 0 0 0 5746 94850.4140625 0.4185547595606325 5 -0.14954757690429688 2 Unmodified _NIDVNRFA_ REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF 20.453626601364224 0.4433031943603284 1 {[CP]|[EA]}AAVGG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]} 10 -1 + 41.7 0 0 4.4011 4.4011 81.216 0 0 0 24.277034080690356 7.269987279362624 7.269987279362624 1.7609125905568064 0 0.805462187404089 0 0 0 {[CP]|[EA]}AAVGG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}AAVN{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}AARG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[Q{I|L}]GG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[Q{I|L}]N{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]} 4.4011;4.2153;3.2634;1.6486;1.4684 -;-;-;-;- 133 + NaN NaN 106858.7 NaN 3718 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5749 34.877 NaN 148580 35 0 17553 0.261 -1 0 37 490.24490942065154 489.23763295405155 1 491.24786376953125 MULTI HCD FTMS 0 0 0 5746 75865.4296875 0.8251672232347865 2 -0.0564422607421875 3 NaN NaN 1 {I|L}[KG] 3 -1 10.458 0 0 2.1375 0 0 173.0271970183078 0 173.0271970183078 0 0 0 0 0 0 0 0 0 {I|L}[KG] 2.1375 - 10 + NaN NaN 118900.9 NaN 3719 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5750 34.881 NaN 96669 35 0 16356 0.261 + 9691 HVTQEDFEM 9 32 576.2373454770075 1150.4601380208148 2 576.2374267578125 MULTI HCD FTMS 0 0 0 5746 54961.6484375 0.3888340358416885 21 -0.5947799682617188 4 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 51.41523569358685 0.02959097413485123 1 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 [HV]T + + 65.126 2.1915 0.64996 5.6608 5.6608 62.722 0 0 0 0 62.93427554967522 0 0 0 2.4247425010840047 0 0.4247425010840047 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.6608 + + 69 + NaN NaN 96633.6 NaN 3720 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5751 34.884 NaN 221190 35 0 25783 0.262 + 30678 VPENHSVAL 9 48 483.2561512518879 964.4977495705758 2 483.25616455078125 MULTI HCD FTMS 0 0 0 5746 101991.9609375 0.051544995884603644 -8 0.17608642578125 5 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 33.4449034751529 0.0954363425218424 1 SVA{I|L} 4 5 37.423 0 0 3.88 0 0 576.2650624005875 0 576.2650624005875 0 9.886831541432315 0 0 0 0.5 0 0.3494850021680094 0 + SVA{I|L} 3.88 + + 46 NaN NaN 108419.4 NaN 3721 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5752 34.887 NaN 121100 35 0 11264 0.261 -1 MLDILMDYCH 10 40 437.52355312281475 1309.5488299686442 3 437.5240478515625 MULTI HCD FTMS 0 0 0 5746 41299.5703125 0.4290899625069978 7 -0.20928573608398438 6 Carbamidomethyl (C) _MLDILMDYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 8.444304893310646 0.4306066564229251 1 M{I|L}D 3 -1 41.26 0 0 3.1507 0 0 0 947.3786136050533 947.3786136050533 35.77500619321228 0 0 0 0 0.7614393726401688 1.0457574905606752 0 0 M{I|L}D 3.1507 + + 15 + NaN NaN 93951 NaN 3722 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5753 34.89 NaN 55200 35 0 6234.6 0.261 + 5289 FFFHFFTL 8 35 553.2789462091756 NaN 0 553.26708984375 PEAK HCD FTMS 0 0 0 5746 2054.401123046875 0.4915088422593914 -1 0.026554107666015625 7 Unmodified _FFFHFFTL_ REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF 2.577480529830294 0.38822285293237185 1 TE 2 -1 9.464 0 0 0.85682 0 0 164.11970774862613 707.3165377252561 871.4362454738823 0 0 0 0 0 0 0 0 0 TE 0.85682 - 4 + NaN NaN 88322.3 NaN 3723 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5754 34.894 NaN 16447 35 0 4941.6 0.261 + 28632 TRFYSFDPF 9 10 590.2769434902135 1178.539334047227 2 590.2774658203125 MULTI HCD FTMS 0 0 0 5746 5551.8779296875 0.28051320618720293 -5 0.12295913696289062 8 Unmodified _TRFYSFDPF_ REV__ENSG00000205929|ENST00000479548|C21orf62 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103438.3 NaN 3724 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5755 34.897 NaN 28535 35 0 5327.8 0.261 + -1 CGSGYGCGYGC 11 20 570.681355618906 1139.3481583046118 2 570.6815795898438 MULTI HCD FTMS 0 0 0 5746 8059.05419921875 0.6496679026341065 -1 0.026554107666015625 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GSGYGC(Carbamidomethyl (C))GYGC_ REV__ENSG00000187026|ENST00000333892|KRTAP21-2;REV__ENSG00000187026|ENST00000333892|KRTAP21-2 0 0.41892066650488113 1 D 1 -1 5.4846 0 0 0.48138 0 0 208.86257588449308 812.4261568658811 1021.2887327503743 0 0 0 0 0 0 0 0 0 D 0.48138 - 1 + NaN NaN 87974.7 NaN 3725 2028 5746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5757 34.902 NaN 1544900 35 0 166010 0.327 + 1520 AYVHMVTHF 9 106 560.7657107079392 1119.5168684826783 2 560.7659912109375 MULTI HCD FTMS 0 0 0 5756 781347.8125 0.6865801801097249 2 -0.063232421875 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 115.5 0 0 10.317 10.317 90.072 0 0 0 87.76690857559869 12.98332479720628 12.98332479720628 1.9897000433601875 0 3.1549471895720984 1.6989700043360187 0.8371804965004639 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[YV]AH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[HT]V{M(Oxidation (M))|F};AYV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F} 10.317;10.14;9.2778;6.9341;6.5426;6.3975;6.3518;5.8848;5.8726;5.707 +;-;+;-;-;-;-;-;-;- + 6756 + NaN NaN 317194.8 NaN 3726 2029 5756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5758 34.907 NaN 60935 35 0 7140.9 0.261 + 25711 SKDSPNLLV 9 29 486.7718541512534 971.5291553693069 2 486.7719421386719 MULTI HCD FTMS 0 0 0 5756 36973.78125 0.9129820946171769 2 -0.063232421875 2 Unmodified _SKDSPNLLV_ REV__ENSG00000130479|ENST00000324096|MAP1S;REV__ENST00000601544.5_1_19:17830311-17836711:+|nuORF;REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;REV__nc|ENSG00000130479|Q66K74-2|MAP1S 1.844237919475145 0.33703635659052655 1 R{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.8192 0 0 248.1769958007506 417.1661471002563 665.3431429010069 0 0 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 0.8192 - 11 + NaN NaN 85071 NaN 3727 2029 5756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5759 34.91 NaN 61946 35 0 7694 0.261 -1 CRGCWESF 8 25 551.2166566983261 NaN 0 551.2162475585938 PEAK HCD FTMS 0 0 0 5756 8868.9892578125 0.5104213267808849 1 -0.0232696533203125 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))RGC(Carbamidomethyl (C))WESF_ ENSG00000001629|ENST00000265742|ANKIB1 4.75600775471527 0.38822285293237185 1 KA 2 -1 9.464 0 0 0.86003 0 0 165.92267999645838 732.3408363622226 898.263516358681 0 0 0 0 0 0 0 0 0 KA 0.86003 - 7 + NaN NaN 93692.7 NaN 3728 2029 5756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5760 34.914 NaN 18884 35 0 6873 0.261 + 30992 VSDSFFRPSVM 11 13 636.306751655863 1270.5989503785258 2 636.3067016601562 MULTI HCD FTMS 0 0 0 5756 6668.47021484375 0.36957586186479324 2 -0.063232421875 4 Unmodified _VSDSFFRPSVM_ ENSG00000166819|ENST00000300055|PLIN1 0.5059551277355931 0.4167017191902429 1 G 1 11 6.9897 0 0 0.55011 0 0 652.8138684466884 557.7504366510374 1210.5643050977258 0 0 0 0 0 0 0 0 0 G 0.55011 - 1 + NaN NaN 80770.4 NaN 3729 2029 5756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5761 34.917 NaN 16856 35 0 4514.6 0.261 + -1 QDCRCIGHDC 10 7 632.23681640625 NaN 0 632.23681640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _QDC(Carbamidomethyl (C))RC(Carbamidomethyl (C))IGHDC_ REV__ENSG00000189056|ENST00000428762|RELN;REV__nc|ENSG00000189056|P78509-2|RELN;REV__nc|ENSG00000189056|P78509-3|RELN;REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80830.6 NaN 3730 2029 5756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5762 34.92 NaN 20803 35 0 3190.3 0.261 + 1649 CCHLCHSDDM 10 19 582.1902514124475 1162.365949891695 2 582.1905517578125 MULTI HCD FTMS 0 0 0 5756 13412.833984375 0.6666722648449612 -13 0.3156852722167969 6 Unmodified _CCHLCHSDDM_ REV__ENSG00000099139|ENST00000674117|PCSK5;REV__nc|ENSG00000099139|Q92824|PCSK5 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91981.5 NaN 3731 2029 5756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5764 34.926 NaN 1372200 35 0 328760 0.327 + 27508 TAADDSSVKL 10 78 503.75622231357596 1005.4978916939519 2 503.7563781738281 MULTI HCD FTMS 0 0 0 5763 1064308.25 0.9292316523899067 2 -0.06326675415039062 1 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 150.61878029816774 1.8873603672180397E-07 1 [TA]ADDSSVK{I|L} 10 0 + 121.03 0 0 12.037 12.037 96.035 0 0 0 12.469413858957466 12.469413858957466 12.469413858957466 12.469413858957466 0 3.110924374808178 1.6989700043360187 2.2575156255085393 0 + + [TA]ADDSSVK{I|L};TAADDSSVK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDSSVK{I|L};[TA]ADDT[TA]K{I|L};[TA]ADDV{[CA]|SS}K{I|L};[TA]ADDTK[TA]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDT[TA]K{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDV{[CA]|SS}K{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDTK[TA]{I|L};[TA][KT]DDDK{I|L} 12.037;10.797;9.2001;8.9878;8.9212;7.588;6.1512;6.0846;4.7514;3.8617 +;+;-;-;-;-;-;-;-;- + 592 NaN NaN 285102.3 NaN 3732 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5765 34.93 NaN 284170 35 0 74748 0.261 + 15609 LPEDAGLSLE 10 51 522.2664894710291 1042.5184260088581 2 522.266357421875 MULTI HCD FTMS 0 0 0 5763 97574.3359375 0.3557292230970824 6 -0.17606353759765625 2 Unmodified _LPEDAGLSLE_ ENST00000316757.3_1_19:3760164-3761632:-|nuORF 43.85829265575387 0.11192494793849486 1 {I|L}PE 3 7 54.425 0 0 5.2205 0 0 0 700.3191024620418 700.3191024620418 27.979917914819055 0 0 0 0 0.3494850021680094 1.6989700043360187 0.7742275032520141 0 + {I|L}PE 5.2205 + + 91 + NaN NaN 119971.5 NaN 3733 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5766 34.934 NaN 346050 35 0 118750 0.261 + 25056 SAARDDAVF 9 44 476.2303193760477 950.4460858188954 2 476.2300109863281 MULTI HCD FTMS 0 0 0 5763 176442.6875 0.36045290348215614 -4 0.11954116821289062 3 Unmodified _SAARDDAVF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 22.736283301280096 0.1639198954644489 1 VYD[SG]V{M(Oxidation (M))|F} 7 6 39.781 0 0 4.1855 0 0 165.07896620918126 0 165.07896620918126 0 26.28607912182254 0 0 0 0 0 0.805462187404089 0 VYD[SG]V{M(Oxidation (M))|F} 4.1855 - 40 NaN NaN 131536 NaN 3734 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5767 34.937 NaN 166060 35 0 22262 0.261 + 12987 KYINTDAKF 9 47 550.2935206337976 1098.572488334395 2 550.2930908203125 MULTI HCD FTMS 0 0 0 5763 86158.1328125 0.5805720352121774 -3 0.08299636840820312 4 Unmodified _KYINTDAKF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 57.24910588100465 0.021429789259086996 1 KY{I|L}N{[ES]|[DT]|[{I|L}C]}AK{M(Oxidation (M))|F} 9 0 + 54.096 0 0 4.9242 4.9242 86.115 0 0 0 47.10585952829945 14.09256854528806 14.09256854528806 9.208187539523749 0 1.805462187404089 0 0 0 + + KY{I|L}N{[ES]|[DT]|[{I|L}C]}AK{M(Oxidation (M))|F};KY{I|L}GG{[ES]|[DT]|[{I|L}C]}AK{M(Oxidation (M))|F};[RH]A[PG]{[ES]|[DT]|[{I|L}C]}AK{M(Oxidation (M))|F};[RH][QP]{[ES]|[DT]|[{I|L}C]}AK{M(Oxidation (M))|F};[KA]{M(Oxidation (M))|F}{[QG]|[NA]}HHK{M(Oxidation (M))|F} 4.9242;4.086;3.4521;2.6078;1.9095 +;-;-;-;- + 166 + NaN NaN 108980.8 NaN 3735 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5768 34.94 NaN 141280 35 0 10592 0.261 + 25098 SAEPSPTVM 9 44 467.7128747434768 933.4111965537536 2 467.71270751953125 MULTI HCD FTMS 0 0 0 5763 67239.8984375 0.5146748931341993 -6 0.15948867797851562 5 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 54.773552608820026 0.024892918755467567 1 V[TP]V{M(Oxidation (M))|F} 5 5 30.203 0 0 3.2358 0 0 372.1192758409978 0 372.1192758409978 0 12.5 0 0 0 0.7742275032520141 0 0.3252574989159953 0 V[TP]V{M(Oxidation (M))|F} 3.2358 - 43 + NaN NaN 105416 NaN 3736 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5769 34.944 NaN 57617 35 0 16576 0.261 + -1 PMACENIDQC 10 28 627.2331071416546 1252.4516613501091 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5763 29335.013671875 0.3106732273320959 17 -0.4752388000488281 6 2 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))AC(Carbamidomethyl (C))ENIDQC(Carbamidomethyl (C))_ REV__ENSG00000168056|ENST00000301873|LTBP3;REV__LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 1.4819007175156935 0.4674597685733628 1 S 1 -1 6.9897 0 0 0.55808 0 0 720.2081670251554 442.1873873346313 1162.3955543597867 0 0 0 0 0 0 0 0 0 S 0.55808 - 3 + NaN NaN 97826.2 NaN 3737 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5770 34.947 NaN 131920 35 0 11406 0.263 + 31256 VVSTHEQVL 9 43 506.27684691112916 1010.5391408890583 2 506.2763977050781 MULTI HCD FTMS 0 0 0 5763 45348.53125 0.8940452452558526 -2 0.0564422607421875 7 Unmodified _VVSTHEQVL_ CON__P02533;ENSG00000186847|ENST00000167586|KRT14;ENST00000417510.5_1_17:16721458-16722199:-|nuORF;ENST00000425692.6_1_17:16721458-16722262:-|nuORF;LGALS3BP-KRT14|1|fusion 13.90604991867851 0.24021115267848145 1 V{I|L} 2 7 25.969 0 0 2.5698 0 0 780.3776860350396 0 780.3776860350396 0 19.006375246153908 0 0 0 0.5 0 0 0 + V{I|L} 2.5698 + + 14 NaN NaN 100038 NaN 3738 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5771 34.95 NaN 135000 35 0 15029 0.262 -1 RYVRKFVLM 9 50 409.90567833389133 1226.695205601874 3 409.9057922363281 MULTI HCD FTMS 0 0 0 5763 45301.890625 0.43039802659339677 24 -0.6805496215820312 8 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 1 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.3405 0 0 948.5651224493334 0 948.5651224493334 0 17.47425010840047 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3405 + + 26 + NaN NaN 99175.9 NaN 3739 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5772 34.954 NaN 18526 35 0 5371.9 0.261 + 8090 GKAFISFCAFR 11 14 623.8232071095631 1245.631861285926 2 623.8233642578125 MULTI HCD FTMS 0 0 0 5763 22331.0859375 0.013419399967760152 31 -0.8825950622558594 9 Unmodified _GKAFISFCAFR_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 2.498486711656943 0.4079631525365919 1 {I|L} 1 10 11.99 0 0 0.96254 0 0 729.3314595298699 400.19480310611567 1129.5262626359856 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.96254 + + 3 + NaN NaN 90355.4 NaN 3740 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5773 34.957 NaN 21068 35 0 3825.1 0.261 + 11495 IYQRHVYNL 9 17 603.3249535321423 1204.6353541310846 2 603.3247680664062 MULTI HCD FTMS 0 0 0 5763 10926.00390625 0.20565103106120167 11 -0.31902313232421875 10 Unmodified _IYQRHVYNL_ ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86780.9 NaN 3741 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5774 34.96 NaN 30834 35 0 9374.4 0.264 -1 EKAARQMRKC 10 24 426.5579176859766 1276.6519236581298 3 426.5322265625 MULTI HCD FTMS 0 0 0 5763 2235.771728515625 0.3154620595539414 1 -0.0399627685546875 11 Carbamidomethyl (C) _EKAARQMRKC(Carbamidomethyl (C))_ ENSG00000176095|ENST00000321599|IP6K1;nc|ENSG00000176095|Q92551-2|IP6K1 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91352.4 NaN 3742 2030 5763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5776 34.966 NaN 164630 35 0 55959 0.327 -1 RYLEKPMEI 9 24 597.8131162390399 1193.6116795448797 2 597.8130493164062 MULTI HCD FTMS 0 0 0 5775 68545.46875 0.08958301528362111 18 -0.49837493896484375 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 15.248480904072842 0.22861284681709862 1 KE 2 -1 18.856 0 0 1.5798 0 0 504.2253872359086 429.2253512018188 933.4507384377274 0 0 0 0 0 0.5 0 0.28872548999643577 0 KE 1.5798 - 5 + NaN NaN 102420 NaN 3743 2031 5775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5777 34.97 NaN 102990 35 0 10774 0.261 + 20295 NYNNQSSNF 9 41 544.2256976528644 1086.4368423725286 2 544.2257080078125 MULTI HCD FTMS 0 0 0 5775 47829.21875 0.5609902084614669 3 -0.08301162719726562 2 Unmodified _NYNNQSSNF_ chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1 26.268140514670165 0.13340543277302316 1 PWWSSN{M(Oxidation (M))|F} 7 5 28.728 0 0 2.6443 0 0 164.02381740895618 0 164.02381740895618 0 18.270694719097946 0 0 0 1.274227503252014 0 0 0 PWWSSN{M(Oxidation (M))|F} 2.6443 - 34 + NaN NaN 97318.5 NaN 3744 2031 5775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5778 34.974 NaN 101800 35 0 16008 0.261 + 1503 AYVEKVEKL 9 40 539.8106694392145 1077.606785945229 2 539.8106079101562 MULTI HCD FTMS 0 0 0 5775 33999.28125 0.39804645790615456 2 -0.053142547607421875 3 Unmodified _AYVEKVEKL_ ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1 17.11289562659939 0.2125047172822487 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE 4 5 40.93 0 0 3.7982 0 0 0 612.3742159479124 612.3742159479124 36.32576888900239 0 0 0 0 0.7742275032520141 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE 3.7982 + + 54 + NaN NaN 98799.3 NaN 3745 2031 5775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5779 34.977 NaN 133150 35 0 17712 0.263 + 12491 KRFLRWYF 8 34 405.89831100230134 NaN 0 405.8983154296875 PEAK HCD FTMS 0 0 0 5775 36776.6484375 0.7078149358616574 -2 0.063232421875 4 Unmodified _KRFLRWYF_ REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF 9.347437153973935 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99214.8 NaN 3746 2031 5775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5780 34.98 NaN 71098 35 0 7403.9 0.261 + 14721 LHKRKEKD 8 33 527.311851095446 1052.6091492576918 2 527.3115234375 MULTI HCD FTMS 0 0 0 5775 17830.38671875 0.5095982443642335 2 -0.053142547607421875 5 Unmodified _LHKRKEKD_ REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant 1.844237919475145 0.5392561982033289 1 {I|L} 1 -1 4.6041 0 0 0.4374 0 0 246.22378656413554 690.2817476861936 936.5055342503292 0 0 0 0 0 0 0 0 0 {I|L} 0.4374 + + 4 + NaN NaN 101623.5 NaN 3747 2031 5775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5781 34.984 NaN 81641 35 0 8990.1 0.261 + 14130 LADGPKNNK 9 37 478.7618961984688 955.5092394637376 2 478.7613525390625 MULTI HCD FTMS 0 0 0 5775 24580.63671875 0.35541113511529066 -3 0.096405029296875 6 Unmodified _LADGPKNNK_ REV__ENSG00000174945|ENST00000683327|AMZ1;REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF;REV__nc|ENSG00000174945|Q400G9-2|AMZ1 13.90604991867851 0.24021115267848145 1 {I|L}AD 3 -1 53.188 0 0 5.5664 0 0 0 653.3378738152218 653.3378738152218 53.187587626244124 0 0 0 0 1 1.6989700043360187 0 0 {I|L}AD 5.5664 + + 11 + NaN NaN 102270.5 NaN 3748 2031 5775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5783 34.989 NaN 670230 35 0 54130 0.326 + 1473 AYSVEHNQL 9 90 530.7565184189167 1059.4984839046333 2 530.756591796875 MULTI HCD FTMS 0 0 0 5782 302187.53125 0.4823743330190335 -2 0.06326675415039062 1 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 121.5340881639634 0.001118397630175091 1 AYSVEHNQ{I|L} 9 0 + 91.229 0 0 8.6106 8.6106 92.413 0 0 0 18.055643042653116 18.055643042653116 18.055643042653116 9.208187539523749 0 2.344187677400525 2 0.7302046884880937 1.055462187404089 + + AYSVEHNQ{I|L};AYSVEHGGQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHNQ{I|L};AYSVEHAA{[NV]|[RG]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHGGQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHN[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[SG]YHNQ{I|L};{[QN]|[E{I|L}]|[KN]}[SG]YHGGQ{I|L};{[QN]|[E{I|L}]|[KN]}[SG]YHN[AG]{I|L} 8.6106;7.7415;6.9064;6.5991;6.0373;6.0373;2.4892;1.6201;1.6201 +;-;+;-;-;-;-;-;- + 1356 + NaN NaN 182394.5 NaN 3749 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5784 34.993 NaN 218740 35 0 37540 0.261 -1 MEEEAGQTSI 10 37 555.734440943786 1109.454328954372 2 555.7347412109375 MULTI HCD FTMS 0 0 0 5782 101159.90625 0.6506548774488498 -12 0.2957954406738281 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 24.990960013464015 0.27735500881591096 1 {M(Oxidation (M))|F}QTS{I|L} 5 -1 48.175 0 0 4.3423 0 0 515.1955433576187 0 515.1955433576187 0 36.938200260161125 0 0 0 1 0 0.9247425010840047 0 {M(Oxidation (M))|F}QTS{I|L} 4.3423 - 37 NaN NaN 118965.7 NaN 3750 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5785 34.997 NaN 194690 35 0 18615 0.261 + 24518 RYLEKSGVL 9 58 532.8084616406329 1063.6023703480657 2 532.80859375 MULTI HCD FTMS 0 0 0 5782 101836.21875 0.8231841356467301 2 -0.0597076416015625 3 Unmodified _RYLEKSGVL_ ENSG00000214114|ENST00000397572|MYCBP;ENST00000495043.5_1_1:39330344-39338774:-|nuORF 23.789781309258295 0.1548179064208189 1 AE[KG]{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 8 8 37.204 0 0 3.4979 0 0 166.2057714872622 0 166.2057714872622 0 3.083595273278867 0 0 0 0 0 0.7302046884880937 0.7742275032520141 AE[KG]{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 3.4979 - 95 + NaN NaN 113528.8 NaN 3751 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5786 35 NaN 611300 35 0 73098 0.261 + 16211 LPVTFFAHL 9 68 522.7954022273298 NaN 0 522.7825317382812 PEAK HCD FTMS 0 0 0 5782 8845.8310546875 0.5057232212037557 17 -0.4750709533691406 4 Unmodified _LPVTFFAHL_ ENSG00000175489|ENST00000339007|LRRC25 9.347437153973935 0.2499504662953367 1 HAN 3 8 22.505 0 0 2.1565 0 0 131.12056953099733 587.2949312799436 718.415500810941 0 0 0 0 0 0 0 0 0.6307196863200843 HAN 2.1565 - 19 + NaN NaN 167264.8 NaN 3752 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5787 35.004 NaN 105230 35 0 19933 0.261 + 34304 YPDSKDLTM 9 30 543.2445894193718 1084.4746259055435 2 543.2445678710938 MULTI HCD FTMS 0 0 0 5782 50871.8046875 0.7897153729232135 -2 0.06326675415039062 5 Oxidation (M) _YPDSKDLTM(Oxidation (M))_ ENSG00000010219|ENST00000543431|DYRK4;ENST00000536137.1_1_12:4714126-4719451:+|nuORF;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4 43.77239144664712 0.04802738721622131 1 YPD 3 6 54.922 0 0 5.0643 0 0 0 706.3079928033811 706.3079928033811 20.457574905606748 0 0 0 0 1 1.5228787452803376 0.3494850021680094 0 + YPD 5.0643 + + 77 + NaN NaN 100384.9 NaN 3753 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5788 35.007 NaN 28298 35 0 4959.9 0.261 -1 FPDSEPPRM 9 16 546.2450052822049 1090.4754576312098 2 546.2449340820312 MULTI HCD FTMS 0 0 0 5782 9081.462890625 0.13465563012179538 39 -1.0447959899902344 6 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 6.723162845929126 0.3000504726104499 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81001.2 NaN 3754 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5789 35.01 NaN 40361 35 0 5642.9 0.261 -1 ACCEYMKL 8 23 509.2146450555546 NaN 0 509.2152404785156 PEAK HCD FTMS 0 0 0 5782 5250.1689453125 0.19045836425761356 17 -0.4750709533691406 7 Carbamidomethyl (C) _AC(Carbamidomethyl (C))CEYMKL_ ENSG00000145332|ENST00000273963|KLHL8;nc|ENSG00000145332|Q9P2G9-2|KLHL8 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86033.6 NaN 3755 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5790 35.013 NaN 43134 35 0 5758.3 0.261 + 2159 DHSFWRRQ 8 29 566.2763402767953 1130.5381276203905 2 566.2752075195312 MULTI HCD FTMS 0 0 0 5782 7010.06591796875 0.31194869189672153 4 -0.11279678344726562 8 Unmodified _DHSFWRRQ_ ENST00000377298.8_1_1:9789586-9789634:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90957.5 NaN 3756 2032 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5792 35.019 NaN 214380 35 0 29197 0.327 + 35156 YVHMVTHF 8 41 525.2471958661686 1048.479838799137 2 525.2470092773438 MULTI HCD FTMS 0 0 0 5791 52589.1484375 0.36352427552323563 6 -0.17940139770507812 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 63.562846038646086 0.043804331777645124 1 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 68.893 0 0 6.5708 6.5708 92.39 0 0 0 6.6154804272490395 6.6154804272490395 6.6154804272490395 23.541170178885622 0 1.6989700043360187 2 0 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[YV]H{M(Oxidation (M))|F}VAA{[QD]|[EN]|[WG]|[KD]|[RS]};{NN|[MP]|[D{I|L}]|[EV]}[WK]CTH{M(Oxidation (M))|F} 6.5708;4.3255;0.73846 +;-;- + 130 NaN NaN 111998.3 NaN 3757 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5793 35.023 NaN 118580 35 0 20521 0.261 -1 FGDEEKKM 8 47 500.2262947352092 998.4380365372184 2 500.2264709472656 MULTI HCD FTMS 0 0 0 5791 23388.33984375 0.6015981890004687 1 -0.02986907958984375 2 Oxidation (M) _FGDEEKKM(Oxidation (M))_ ENSG00000147050|ENST00000611820|KDM6A;KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A 11.640296217721598 0.50814828952472 1 Q[PG]{M(Oxidation (M))|F} 4 -1 18.812 0 0 1.8842 0 0 551.2590947420997 0 551.2590947420997 0 10.140143618001217 0 0 0 0.5 0 0 0 Q[PG]{M(Oxidation (M))|F} 1.8842 - 63 + NaN NaN 103626.1 NaN 3758 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5794 35.027 NaN 63527 35 0 4469 0.261 + 9109 HPFPDHEL 8 45 496.2352111150809 990.4558692969619 2 496.2352294921875 MULTI HCD FTMS 0 0 0 5791 20912.291015625 0.6494910029262327 3 -0.08295822143554688 3 Unmodified _HPFPDHEL_ ENSG00000159842|ENST00000302538|ABR;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-2|ABR;nc|ENSG00000159842|Q12979-4|ABR;VPS53-ABR|1|fusion 9.347437153973935 0.5250182646323369 1 {M(Oxidation (M))|F}{I|L} 2 6 18.583 0 0 1.8763 0 0 712.3150501935562 0 712.3150501935562 0 9.631068929195406 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.8763 - 8 NaN NaN 90765 NaN 3759 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5795 35.03 NaN 47947 35 0 5421.5 0.261 -1 0 28 490.24490942065154 489.23763295405155 1 491.24761962890625 MULTI HCD FTMS 0 0 0 5791 15009.443359375 0.16325354974158862 7 -0.19604110717773438 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 2.9851 0 0 324.15900243822966 0 324.15900243822966 0 4.146518864155125 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.9851 - 4 + NaN NaN 90060.9 NaN 3760 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5796 35.033 NaN 28165 35 0 5237.1 0.261 + -1 CCWCPFFL 8 24 566.725594978968 1131.436637024736 2 566.724609375 MULTI HCD FTMS 0 0 0 5791 9469.45703125 0.3982931193839667 -12 0.3057060241699219 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))WCPFFL_ REV__ENST00000394095.6_1_3:101062560-101062668:-|nuORF 0.7936320650641473 0.540814922690045 1 R{[QN]|[E{I|L}]|[KN]} 3 -1 7.4473 0 0 0.65821 0 0 715.2063341456329 0 715.2063341456329 0 0.45757490560674974 0 0 0 0 0 0 0 R{[QN]|[E{I|L}]|[KN]} 0.65821 - 5 + NaN NaN 81451 NaN 3761 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5797 35.037 NaN 58928 35 0 5808.7 0.261 + 8889 HPARPTVEF 9 32 527.2774158858034 1052.5402788384067 2 527.2779541015625 MULTI HCD FTMS 0 0 0 5791 10293.4609375 0.08871694896161018 16 -0.4452323913574219 6 Unmodified _HPARPTVEF_ chr8:143931659-143932130|203|20.13|0.24|6.42|-|0|PLEC,PLEC|1 3.2813086475875832 0.32614229037259 1 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.3875 0 0 887.4942410960224 0 887.4942410960224 0 5.651668842475031 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3875 + + 6 + NaN NaN 92380.5 NaN 3762 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5798 35.04 NaN 83167 35 0 11820 0.263 + 32511 WGGGEPGF 8 32 403.6768751034505 805.3391972737011 2 403.6768493652344 MULTI HCD FTMS 0 0 0 5791 13600.5771484375 0.466847535145996 -2 0.053142547607421875 7 Unmodified _WGGGEPGF_ ENST00000405308.6_2_11:46402334-46402400:+|nuORF 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 7 21.237 0 0 2.637 0 0 640.2602158057308 0 640.2602158057308 0 15.752574989159953 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 2.637 + + 18 + NaN NaN 103769.5 NaN 3763 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5799 35.043 NaN 22125 35 0 2446.7 0.261 -1 IISCSVFSNL 10 25 570.2937475192041 NaN 0 570.293701171875 PEAK HCD FTMS 0 0 0 5791 2853.298583984375 0.3244949399594273 1 -0.02986907958984375 8 Carbamidomethyl (C) _IISC(Carbamidomethyl (C))SVFSNL_ chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|81 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84745 NaN 3764 2033 5791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5801 35.049 NaN 2172600 35 0 224430 0.327 + 30679 VPENHSVAL 9 99 483.2561512518879 964.4977495705758 2 483.2562255859375 MULTI HCD FTMS 0 0 0 5800 1718432.125 0.8684662594670067 -2 0.0597076416015625 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 140.63315402491853 1.8728231636916273E-05 1 [VP]ENHSVA{I|L} 9 0 + 93.806 0 0 9.7259 9.7259 91.579 0 0 0 6.3452090666831396 8.604159301997 6.3452090666831396 6.3452090666831396 0 2.341129063296272 1.3010299956639813 1.4291746928241125 0.5010912013506126 + + [VP]ENHSVA{I|L};[EP]VNHSVA{I|L};VPENHSVA{I|L};[VP]ENHSAV{I|L};[VP]EGGHSVA{I|L};[VP]ENHSA{I|L}V;[EP]VNHSAV{I|L};VPEGGHSVA{I|L};[EP][HN]VSVA{I|L};[EP]VGGHSVA{I|L} 9.7259;9.0681;8.8338;8.7599;8.2517;8.108;8.102;7.8791;7.8452;7.5938 +;-;+;-;-;-;-;-;-;- + 3329 NaN NaN 405696.1 NaN 3765 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5802 35.053 NaN 650860 35 0 64406 0.261 + 1521 AYVHMVTHF 9 86 560.7657107079392 1119.5168684826783 2 560.7657470703125 MULTI HCD FTMS 0 0 0 5800 296739.3125 0.26074857747411423 7 -0.19604873657226562 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 98.739 0 0 8.8198 8.8198 88.837 0 0 0 2.129843661361406 2.129843661361406 2.129843661361406 2.129843661361406 0 2.9291746928241125 2 0.2614393726401688 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};[Y{I|L}]GH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F};{M(Oxidation (M))|F}NAAV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F};AYV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[C(Carbamidomethyl (C))H][{I|L}T] 8.8198;8.6295;7.6372;5.0713;4.9192;4.7011;3.8887;3.809;3.5858;3.0603 +;+;-;-;-;-;-;-;-;- + 1427 + NaN NaN 173683.9 NaN 3766 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5803 35.057 NaN 69128 35 0 14353 0.261 -1 HVTQEDFEM 9 28 576.2373454770075 1150.4601380208148 2 576.2372436523438 MULTI HCD FTMS 0 0 0 5800 43133.05078125 0.30515093142648125 27 -0.7596206665039062 3 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 34.93206674587334 0.08860942999206235 1 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 -1 55.165 0 0 4.795 0 0 594.2765575538211 0 594.2765575538211 0 48.17532531436136 0 0 0 2 0 0.7742275032520141 0 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.795 + + 24 + NaN NaN 93251.5 NaN 3767 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5804 35.06 NaN 76901 35 0 12255 0.261 -1 CPAGCRVIL 9 28 494.7557706440444 987.4969883548888 2 494.76458740234375 MULTI HCD FTMS 0 0 0 5800 5346.2490234375 0.15302023383934238 -3 0.08301162719726562 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))PAGCRVIL_ nc|ENSG00000206120|Q0D2K5|EGFEM1P 3.944395688203298 0.32111559684428237 1 V{I|L}{I|L} 3 -1 26.198 0 0 2.653 0 0 644.2641001424855 0 644.2641001424855 0 23.098943791441968 0 0 0 0 0 0 0 V{I|L}{I|L} 2.653 + + 7 NaN NaN 94181 NaN 3768 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5805 35.063 NaN 27747 35 0 6772.4 0.261 -1 TQECPELRF 9 19 590.2769434902135 1178.539334047227 2 590.2769165039062 MULTI HCD FTMS 0 0 0 5800 17150.337890625 0.8665349508438996 1 -0.02986907958984375 5 Carbamidomethyl (C) _TQEC(Carbamidomethyl (C))PELRF_ ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1 2.9952420565917617 0.3283108881486655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90573.8 NaN 3769 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5806 35.067 NaN 24401 35 0 6110.4 0.261 + 14652 LGHGQRVQQ 9 20 511.7794613359057 NaN 0 511.7795104980469 PEAK HCD FTMS 0 0 0 5800 5461.61669921875 0.3978083075546438 1 -0.02986907958984375 6 Unmodified _LGHGQRVQQ_ REV__nc|ENSG00000103356|Q5JPH6-2|EARS2 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80365 NaN 3770 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5807 35.07 NaN 39724 35 0 5280.8 0.261 -1 0 29 552.7659068832946 1103.5172608333892 2 553.2672729492188 MULTI HCD FTMS 0 0 0 5800 17587.703125 0.1946806075466056 73 -1.9251480102539062 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91997.5 NaN 3771 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5808 35.073 NaN 64200 35 0 8967.2 0.262 + -1 EMVNACIQQMA 11 46 437.52355312281475 1309.5488299686442 3 437.5242919921875 MULTI HCD FTMS 0 0 0 5800 15682.666015625 0.16293812554794485 13 -0.352264404296875 8 Carbamidomethyl (C),Oxidation (M) _EMVNAC(Carbamidomethyl (C))IQQM(Oxidation (M))A_ REV__ENSG00000155561|ENST00000285968|NUP205;REV__ENST00000477620.5_1_7:135320372-135330929:+|nuORF 1.214830529360525 0.41359283248740725 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95037.9 NaN 3772 2034 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5810 35.079 NaN 562470 35 0 217840 0.326 + 25057 SAARDDAVF 9 42 476.2303193760477 950.4460858188954 2 476.230224609375 MULTI HCD FTMS 0 0 0 5809 428385.40625 0.8751440237056891 1 -0.023220062255859375 1 Unmodified _SAARDDAVF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 26.268140514670165 0.13340543277302316 1 DYV{M(Oxidation (M))|F} 4 6 37.423 0 0 3.9374 0 0 408.21221238315167 0 408.21221238315167 0 31.938200260161125 0 0 0 1 0 0 0 DYV{M(Oxidation (M))|F} 3.9374 - 62 + NaN NaN 176825 NaN 3773 2035 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5811 35.083 NaN 527530 35 0 75680 0.261 + 27509 TAADDSSVKL 10 67 503.75622231357596 1005.4978916939519 2 503.75628662109375 MULTI HCD FTMS 0 0 0 5809 203462.671875 0.17764022292044776 7 -0.19940185546875 2 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 55.24861242081279 0.058701489357514555 1 TAADDS[VS]K{I|L} 10 0 + 70.384 0 0 7 7 95.088 0 0 0 45.60819062359316 1.5095605610280955 1.5095605610280955 70.38448761687457 0 2.329689690656103 1.6989700043360187 0.28872548999643577 0 + + TAADDS[VS]K{I|L} 7 + + 267 + NaN NaN 157061.8 NaN 3774 2035 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5812 35.086 NaN 115610 35 0 16770 0.261 + 12988 KYINTDAKF 9 41 550.2935206337976 1098.572488334395 2 550.2927856445312 MULTI HCD FTMS 0 0 0 5809 90585.9765625 0.6104088268605459 2 -0.05649566650390625 3 Unmodified _KYINTDAKF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 32.037481411007896 0.10189719824197178 1 AK{M(Oxidation (M))|F} 3 6 32.435 0 0 2.9525 0 0 734.3597543176538 0 734.3597543176538 0 2.7422750325201406 0 0 0 0.9247425010840047 0 0 0 + AK{M(Oxidation (M))|F} 2.9525 + + 13 NaN NaN 113465.8 NaN 3775 2035 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5813 35.09 NaN 77119 35 0 14596 0.261 + 7178 FSLDNGALQL 10 25 539.2823347094069 1076.5501164856137 2 539.2823486328125 MULTI HCD FTMS 0 0 0 5809 37186.453125 0.4288236333879949 -9 0.2723846435546875 4 Unmodified _FSLDNGALQL_ REV__ENSG00000205213|ENST00000379214|LGR4;REV__nc|ENSG00000205213|Q9BXB1-2|LGR4 2.9952420565917617 0.4594494122822477 1 PE 2 -1 17.959 0 0 1.6682 0 0 832.4265003888687 0 832.4265003888687 0 17.95880017344075 0 0 0 0 0 0 0 PE 1.6682 - 1 NaN NaN 92662.1 NaN 3776 2035 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5814 35.093 NaN 99981 35 0 11823 0.261 -1 SFLIFLLM 8 36 500.28164145458516 998.5487299759703 2 500.7824401855469 MULTI HCD FTMS 0 0 0 5809 23233.943359375 0.34386695986475396 8 -0.226043701171875 5 Oxidation (M) _SFLIFLLM(Oxidation (M))_ ENSG00000167619|ENST00000301204|TMEM145 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5507 0 0 833.5031499972579 0 833.5031499972579 0 5.722965919309646 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5507 + + 72 + NaN NaN 93787.1 NaN 3777 2035 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5815 35.096 NaN 12266 35 0 3855.3 0.261 -1 WKRMAGIFF 9 12 586.3091430664062 NaN 0 586.3091430664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WKRM(Oxidation (M))AGIFF_ ENSG00000166105|ENST00000431683|GLB1L3;nc|ENSG00000166105|Q8NCI6-4|GLB1L3 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86449.5 NaN 3778 2035 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5817 35.102 NaN 186570 35 0 21630 0.327 + 25099 SAEPSPTVM 9 43 467.7128747434768 933.4111965537536 2 467.71282958984375 MULTI HCD FTMS 0 0 0 5816 130645.3828125 1 0 0 1 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 78.14939416004806 0.006451203201226903 1 {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 9 0 + 63.489 0 0 6.8018 6.8018 94.62 0 0 0 12.285983738953526 37.80259340951212 12.285983738953526 63.48895576792224 0 2.3494850021680094 1.3979400086720375 0.5891368308784531 0 + + {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 6.8018 + + 75 NaN NaN 102755.8 NaN 3779 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5818 35.106 NaN 118150 35 0 35997 0.261 -1 RYLEKPMEI 9 25 597.8131162390399 1193.6116795448797 2 597.8131713867188 MULTI HCD FTMS 0 0 0 5816 57920.3125 0.07569685253512269 23 -0.6532859802246094 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 8.155526934196011 0.2891920862272901 1 KE 2 -1 18.583 0 0 1.5569 0 0 504.22607562130435 429.2243746393188 933.4504502606231 0 0 0 0 0 1 0 0 0 KE 1.5569 - 7 + NaN NaN 96244.9 NaN 3780 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5819 35.11 NaN 125340 35 0 12646 0.264 + 28254 TLLPFLYTLF 10 48 409.90567833389133 1226.695205601874 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5816 28959.345703125 0.2751330037246313 30 -0.8025970458984375 3 Unmodified _TLLPFLYTLF_ ENSG00000090402|ENST00000264382|SI;SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant 6.723162845929126 0.4397169348982109 1 R{M(Oxidation (M))|F} 2 9 23.583 0 0 1.9225 0 0 905.5479715704272 0 905.5479715704272 0 9.872118693881546 0 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.9225 - 32 + NaN NaN 106645.4 NaN 3781 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5820 35.113 NaN 60225 35 0 12705 0.261 -1 AGADHIITM 9 25 472.7290404436883 943.4435279541766 2 472.7289123535156 MULTI HCD FTMS 0 0 0 5816 26746.46484375 0.8086346145374826 -2 0.053089141845703125 4 Oxidation (M) _AGADHIITM(Oxidation (M))_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENST00000430496.1_1_9:127913263-127913512:+|nuORF;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 15.847184025352803 0.2234401846867398 1 {I|L}T{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.8368 0 0 564.2639027326187 0 564.2639027326187 0 36.197887582883936 0 0 0 1 0 0 0 {I|L}T{M(Oxidation (M))|F} 3.8368 + + 8 NaN NaN 108641.5 NaN 3782 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5821 35.116 NaN 31763 35 0 9641.8 0.261 -1 CFWEECPPE 9 14 627.2331071416546 1252.4516613501091 2 627.2341918945312 MULTI HCD FTMS 0 0 0 5816 30175.580078125 0.3195752677789698 23 -0.6532859802246094 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83906.7 NaN 3783 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5822 35.12 NaN 76164 35 0 9347.2 0.264 + 25289 SAWGRGQAGP 10 33 493.744041620953 985.473530308706 2 494.2475891113281 MULTI HCD FTMS 0 0 0 5816 7817.5732421875 0.5550494401452176 1 -0.033275604248046875 6 Unmodified _SAWGRGQAGP_ REV__ENST00000378392.5_1_20:10015715-10015934:+|nuORF 3.944395688203298 0.4544253912184634 1 AE 2 -1 10.969 0 0 1.1131 0 0 170.06033558389976 612.3097017877561 782.3700373716558 0 0 0 0 0 0 0 0 0 AE 1.1131 - 30 + NaN NaN 94785.2 NaN 3784 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5823 35.123 NaN 21260 35 0 5007.6 0.261 -1 RGMIKMWA 8 12 512.756473578702 1023.4983942242039 2 512.2550048828125 MULTI HCD FTMS 0 0 0 5816 3014.96923828125 0.2503655337108447 -1 0.023220062255859375 7 2 Oxidation (M) _RGM(Oxidation (M))IKM(Oxidation (M))WA_ ENST00000525546.5_1_1:26759017-26759095:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88554.8 NaN 3785 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5824 35.126 NaN 34131 35 0 4296.4 0.261 -1 ALPSHVVTM 9 18 485.75445363208695 969.4943543309739 2 486.27874755859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _ALPSHVVTM(Oxidation (M))_ ENSG00000062485|ENST00000351328|CS;ENST00000546621.5_1_12:56668606-56679804:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000547912.1_1_12:56676173-56676410:-|nuORF 3.944395688203298 0.32111559684428237 1 V 1 -1 3.9794 0 0 0.41046 0 0 411.1488475944489 456.25946985416255 867.4083174486115 0 0 0 0 0 0 0 0 0 V 0.41046 + + 2 + NaN NaN 92257.8 NaN 3786 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5825 35.13 NaN 54451 35 0 7083.9 0.261 + 17970 MKFSNSIGNS 10 38 542.7582313804813 1083.5019098277626 2 542.757568359375 MULTI HCD FTMS 0 0 0 5816 11445.138671875 0.05835552005396992 22 -0.6201133728027344 9 Unmodified _MKFSNSIGNS_ ERICH3|p.R210S|1|0.41|ENSG00000178965|chr1:74631902-74631902|C/A|missense_variant 2.498486711656943 0.462078817294651 1 PD 2 10 9.464 0 0 0.87346 0 0 162.09317066936256 706.3121431940061 868.4053138633687 0 0 0 0 0 0 0 0 0 PD 0.87346 - 5 + NaN NaN 88776.8 NaN 3787 2036 5816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5827 35.135 NaN 659770 35 0 57056 0.327 + 1474 AYSVEHNQL 9 69 530.7565184189167 1059.4984839046333 2 530.7565307617188 MULTI HCD FTMS 0 0 0 5826 391913.8125 0.6256021323038425 3 -0.07980728149414062 1 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 140.63315402491853 1.8728231636916273E-05 1 AYSVEHNQ{I|L} 9 0 + 100.89 0 0 9.5225 9.5225 93.454 0 0 0 72.95375982477599 11.2720226693571 11.2720226693571 9.208187539523749 0 2.5545970543767123 2 0.7614393726401688 1.4876954943324545 + + AYSVEHNQ{I|L};AYSVEHGGQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHNQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHN[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHGGQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHGG[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV[NS][SG]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV{[DS]|[MA]|[CV]|TT}[KG]AY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV[NS][VS]AY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV{[DS]|[MA]|[CV]|TT}[KQ]Y 9.5225;8.6534;7.7271;6.858;6.858;5.5921;5.4176;4.7958;4.6296;4.3226 +;-;+;-;-;-;-;-;-;- + 760 + NaN NaN 176083.4 NaN 3788 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5828 35.139 NaN 145290 35 0 24314 0.261 -1 MEEEAGQTSI 10 31 555.734440943786 1109.454328954372 2 555.73486328125 MULTI HCD FTMS 0 0 0 5826 60291.5859375 0.3877921195618037 -7 0.20933914184570312 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 19.361941925380144 0.3300069447713393 1 H{M(Oxidation (M))|F}QTS{I|L} 6 -1 55.623 0 0 5.0135 0 0 378.147752830275 0 378.147752830275 0 48.63290021996811 0 0 0 1 0 0.9247425010840047 0 H{M(Oxidation (M))|F}QTS{I|L} 5.0135 - 44 NaN NaN 102384.7 NaN 3789 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5829 35.143 NaN 92383 35 0 12370 0.261 + 14140 LADSQGPLR 9 40 478.7618961984688 955.5092394637376 2 478.7617492675781 MULTI HCD FTMS 0 0 0 5826 47056.0234375 0.680382485420991 3 -0.07980728149414062 3 Unmodified _LADSQGPLR_ ENST00000486101.1_1_17:73894933-73895551:-|nuORF 24.020572477871973 0.15282392193088168 1 {I|L}AD 3 6 57.435 0 0 6.0109 0 0 0 653.337213209308 653.337213209308 53.253800256993955 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 + {I|L}AD 6.0109 + + 13 + NaN NaN 98436.4 NaN 3790 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5830 35.146 NaN 100150 35 0 12224 0.261 + 12492 KRFLRWYF 8 32 405.89831100230134 NaN 0 405.8982238769531 PEAK HCD FTMS 0 0 0 5826 35687.34765625 0.6868499106249278 4 -0.10968399047851562 4 Unmodified _KRFLRWYF_ REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF 9.347437153973935 0.38822285293237185 1 M 1 -1 3.9794 0 0 0.49142 0 0 519.3613975399559 156.35701929263908 675.7184168325949 0 0 0 0 0 0 0 0 0 M 0.49142 - 1 + NaN NaN 89060.2 NaN 3791 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5831 35.15 NaN 122190 35 0 11959 0.261 + 23030 RCPCVAPVW 9 42 515.7513089453506 1029.4880649575011 2 515.7515258789062 MULTI HCD FTMS 0 0 0 5826 31123.564453125 0.7498637703473927 -1 0.033275604248046875 5 Unmodified _RCPCVAPVW_ REV__ENST00000449296.6_1_7:966765-966822:-|nuORF 4.3292370932331545 0.3181982124262546 1 C{[QG]|[NA]} 3 -1 10.458 0 0 1.0158 0 0 723.4033463110052 0 723.4033463110052 0 3.4678748622465623 0 0 0 0 0 0 0 C{[QG]|[NA]} 1.0158 - 18 NaN NaN 100164.8 NaN 3792 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5832 35.153 NaN 53253 35 0 9063.3 0.261 -1 HSLPQEPVM 9 24 527.2553013462582 1052.4960497593163 2 527.2539672851562 MULTI HCD FTMS 0 0 0 5826 7194.0400390625 0.05435885961741123 -12 0.3455162048339844 6 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 12.240655878213236 0.2545997876781172 1 E 1 -1 9.6041 0 0 0.91251 0 0 562.284484673182 358.14423547916255 920.4287201523446 0 0 0 0 0 0.5 0 0 0 E 0.91251 + + 4 + NaN NaN 90968.2 NaN 3793 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5833 35.156 NaN 30536 35 0 4957.3 0.261 + -1 AIDCDHYIS 9 17 547.2361138541922 1092.4576747751844 2 547.2352905273438 MULTI HCD FTMS 0 0 0 5826 8073.19677734375 0.523792722896061 -1 0.033275604248046875 7 Carbamidomethyl (C) _AIDC(Carbamidomethyl (C))DHYIS_ REV__sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1 3.944395688203298 0.32111559684428237 1 [{I|L}A]D 3 -1 15.458 0 0 1.4149 0 0 0 790.2872785699782 790.2872785699782 15.45757490560675 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.4149 + + 1 + NaN NaN 82950.6 NaN 3794 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5834 35.16 NaN 35946 35 0 8243.7 0.261 + 25646 SHDPHSRF 8 21 491.72762925243404 981.4407055716681 2 491.72760009765625 MULTI HCD FTMS 0 0 0 5826 5724.71435546875 0.49396438331000625 2 -0.06316757202148438 8 Unmodified _SHDPHSRF_ REV__ENSG00000161381|ENST00000315392|PLXDC1;REV__ENST00000394318.7_1_17:37224095-37235479:-|nuORF;REV__nc|ENSG00000161381|Q8IUK5-4|PLXDC1 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.488 0 0 816.3618614327994 0 816.3618614327994 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.488 + + 3 + NaN NaN 86467.9 NaN 3795 2037 5826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5836 35.165 NaN 756810 35 0 74312 0.327 + 24114 RYASINAHL 9 69 522.7825573649653 1043.5505617967306 2 522.7830810546875 MULTI HCD FTMS 0 0 0 5835 243382.90625 0.5367167673333968 3 -0.07981491088867188 1 Unmodified _RYASINAHL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENST00000606299.1_1_5:148886668-148892751:-|nuORF;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 38.175570920033316 0.07371992880350783 1 NAH{I|L} 4 5 49.993 0 0 4.7906 0 0 590.3196080318127 0 590.3196080318127 0 36.49797211252192 0 0 0 1.1549471895720984 0 0 0.6505149978319906 + NAH{I|L} 4.7906 + + 53 NaN NaN 208969 NaN 3796 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5837 35.169 NaN 779110 35 0 46548 0.261 + 21845 QAVKEYNAL 9 94 518.277168286866 1034.5397836405318 2 518.2772216796875 MULTI HCD FTMS 0 0 0 5835 440770.53125 0.8231881366512698 -1 0.02986907958984375 2 Unmodified _QAVKEYNAL_ ENSG00000087884|ENST00000393427|AAMDC 118.0683919894846 0.0016252157255221692 1 {[QG]|[NA]}{I|L}[YE]KNA{I|L} 9 4 + 45.431 0 0 4.3914 4.3914 83.79 0 0 0 7.714147084717716 7.714147084717716 7.714147084717716 7.714147084717716 0 1.110924374808178 1.3010299956639813 0.6307196863200843 1.8807196863200843 {[QG]|[NA]}{I|L}[YE]KNA{I|L};[QA]VKEYNA{I|L};{[QG]|[NA]}Y{[QN]|[E{I|L}]|[KN]}KNA{I|L};[YN]V[QT]{I|L}NA{I|L};[QA]V[YE]KNA{I|L};{[QG]|[NA]}{I|L}[YE]KGGA{I|L};{[QG]|[NA]}Y{[QN]|[E{I|L}]|[KN]}KGGA{I|L};[QA]VKE{[QV]|[N{I|L}]|[RA]|[KV]}S{M(Oxidation (M))|F};[YN]V[QT]{I|L}GGA{I|L};[QA]V[YE]KGGA{I|L} 4.3914;3.6458;3.5907;3.5537;3.5364;3.5013;2.7006;2.6813;2.6637;2.6463 -;+;-;-;-;-;-;-;-;- + 1393 NaN NaN 213978.1 NaN 3797 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5838 35.173 NaN 99442 35 0 12896 0.261 + 27654 TALEEGAPQA 10 31 493.744041620953 985.473530308706 2 494.7563781738281 MULTI HCD FTMS 0 0 0 5835 4373.88037109375 0.5427970511303916 -2 0.06314468383789062 3 Unmodified _TALEEGAPQA_ REV__ENSG00000105146|ENST00000302804|AURKC 5.731851221503515 0.44496410492002586 1 E{I|L} 2 -1 17.959 0 0 1.8224 0 0 0 740.3108871176648 740.3108871176648 4.771212547196624 0 0 0 0 0 0 0 0 E{I|L} 1.8224 - 18 + NaN NaN 106347.6 NaN 3798 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5839 35.176 NaN 114570 35 0 18317 0.261 -1 YVHMVTHF 8 28 525.2471958661686 1048.479838799137 2 525.2471923828125 MULTI HCD FTMS 0 0 0 5835 16769.3359375 0.1159186044803589 11 -0.2991294860839844 4 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 20.871210003555333 0.44023077629866025 1 [YV]H 3 -1 35.19 0 0 3.3562 0 0 0 646.2650240533811 646.2650240533811 30.752574989159953 0 0 0 0 0.7742275032520141 2 0 0 [YV]H 3.3562 + + 14 + NaN NaN 92937.3 NaN 3799 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5840 35.18 NaN 35112 35 0 5156.3 0.261 -1 YPDSKDLTM 9 20 543.2445894193718 1084.4746259055435 2 543.244384765625 MULTI HCD FTMS 0 0 0 5835 15320.2900390625 0.2378266042616504 4 -0.113037109375 5 Oxidation (M) _YPDSKDLTM(Oxidation (M))_ ENSG00000010219|ENST00000543431|DYRK4;ENST00000536137.1_1_12:4714126-4719451:+|nuORF;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4 5.731851221503515 0.3075653528928475 1 YPD 3 -1 24.693 0 0 2.2769 0 0 0 706.3111666315061 706.3111666315061 9.208187539523749 0 0 0 0 0 0 0 0 YPD 2.2769 + + 4 + NaN NaN 86170.6 NaN 3800 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5841 35.183 NaN 37090 35 0 4832 0.261 + 19545 NSLVEIVLEHD 11 25 634.3303267796398 1266.6461006260795 2 634.3301391601562 MULTI HCD FTMS 0 0 0 5835 15553.3095703125 0.6862173647332305 -1 0.02986907958984375 6 Unmodified _NSLVEIVLEHD_ REV__ENSG00000115290|ENST00000263915|GRB14;REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF;REV__nc|ENSG00000115290|Q14449-2|GRB14 5.296884461304476 0.39569033063702824 1 {I|L}{I|L}S{I|L} 4 -1 23.928 0 0 1.8891 0 0 429.186702287992 408.15293298892817 837.3396352769201 0 0 0 0 0 0 0 0.5 0 {I|L}{I|L}S{I|L} 1.8891 - 41 + NaN NaN 89677.8 NaN 3801 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5842 35.186 NaN 25894 35 0 4175.4 0.264 + -1 KMENWYDNLK 10 19 452.87975313301064 NaN 0 452.8700866699219 PEAK HCD FTMS 0 0 0 5835 1643.7430419921875 0.3907547923206794 1 -0.033298492431640625 7 Oxidation (M) _KM(Oxidation (M))ENWYDNLK_ REV__ENSG00000159256|ENST00000400485|MORC3;REV__MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96155.2 NaN 3802 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5843 35.19 NaN 16799 35 0 5080.2 0.261 + 27950 TETQALAQRTQ 11 16 623.8227597261155 NaN 0 623.8234252929688 PEAK HCD FTMS 0 0 0 5835 12464.220703125 0.9016178647372795 1 -0.033298492431640625 8 Unmodified _TETQALAQRTQ_ ENSG00000163060|ENST00000295201|TEKT4;ENST00000468063.1_1_2:95537336-95538738:+|nuORF 0.9622753412299311 0.33939044544643376 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85889.2 NaN 3803 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5844 35.193 NaN 30148 35 0 8665.5 0.264 + 8293 GWEEYFDYIF 10 22 456.8643247969279 NaN 0 456.8639831542969 PEAK HCD FTMS 0 0 0 5835 7597.51416015625 0.859754366456929 20 -0.5569686889648438 9 Unmodified _GWEEYFDYIF_ ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86883.4 NaN 3804 2038 5835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5846 35.198 NaN 2285500 35 0 231930 0.327 + 30680 VPENHSVAL 9 93 483.2561512518879 964.4977495705758 2 483.2563171386719 MULTI HCD FTMS 0 0 0 5845 1750003.25 0.8844217670701454 3 -0.07973861694335938 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 117.76058876431921 0.001675465467887476 1 [VP]ENHSVA{I|L} 9 0 + 95.316 0 0 9.8825 9.8825 92.427 0 0 0 8.02378753635658 10.908466870110303 8.02378753635658 8.02378753635658 0 2.4361818737241734 1.3979400086720375 1.055462187404089 0.8338395061109686 + + [VP]ENHSVA{I|L};[EP]VNHSVA{I|L};VPENHSVA{I|L};[VP]ENHSAV{I|L};[EP]NVHSVA{I|L};[VP]EGGHSVA{I|L};[VP]ENHSA{I|L}V;[EP]NHVSVA{I|L};VPEGGHSVA{I|L};[EP]VNHSAV{I|L} 9.8825;9.0506;8.7515;8.6116;8.1612;8.0632;8.012;7.9989;7.7968;7.7797 +;-;+;-;-;-;-;-;-;- + 2564 NaN NaN 446808 NaN 3805 2039 5845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5847 35.203 NaN 425260 35 0 43074 0.261 + 1522 AYVHMVTHF 9 75 560.7657107079392 1119.5168684826783 2 560.7656860351562 MULTI HCD FTMS 0 0 0 5845 142413.71875 0.12514073131736156 12 -0.3288917541503906 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 97.07464715276575 0.004340583992084827 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 94.447 0 0 8.4364 8.4364 94.865 0 0 0 17.32779677648047 16.478174818886373 16.478174818886373 17.32779677648047 0 2.7302046884880937 2 1.031234684152075 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};[Y{I|L}]GH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}NAAV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}N[Q{I|L}]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VSE 8.4364;6.8886;4.5256;4.3877;4.3291;3.2797;3.1681;2.942;2.5807;1.8635 +;-;-;-;-;-;-;-;-;- + 774 NaN NaN 144014.4 NaN 3806 2039 5845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5848 35.206 NaN 18465 35 0 3304.8 0.261 -1 LEDMFTRVI 9 20 570.292799400704 1138.5710458682079 2 570.7922973632812 MULTI HCD FTMS 0 0 0 5845 13065.953125 1 0 0 3 Oxidation (M) _LEDM(Oxidation (M))FTRVI_ tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1 1.6526216038709556 0.33848895094777925 1 W 1 -1 3.0989 0 0 0.27218 0 0 637.3134907918392 312.1457613580688 949.459252149908 0 0 0 0 0 0 0 0 0 W 0.27218 - 1 + NaN NaN 86248.6 NaN 3807 2039 5845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5849 35.21 NaN 23896 35 0 2898.9 0.261 -1 YECFECPK 8 21 566.725594978968 1131.436637024736 2 566.7254028320312 MULTI HCD FTMS 0 0 0 5845 8137.6328125 0.3422755018155569 -6 0.17940139770507812 4 2 Carbamidomethyl (C) _YEC(Carbamidomethyl (C))FEC(Carbamidomethyl (C))PK_ ENSG00000221994|ENST00000276054|ZNF630;nc|ENSG00000221994|Q2M218-2|ZNF630 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86095.7 NaN 3808 2039 5845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5851 35.215 NaN 220230 35 0 76883 0.327 + 25058 SAARDDAVF 9 33 476.2303193760477 950.4460858188954 2 476.2303161621094 MULTI HCD FTMS 0 0 0 5850 112322.3671875 0.22946217807254402 6 -0.16616439819335938 1 Unmodified _SAARDDAVF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 20.41453444215458 0.18397929046831515 1 DAV{M(Oxidation (M))|F} 4 5 41.67 0 0 4.3843 0 0 500.2335377423844 0 500.2335377423844 0 23.711375162600703 0 0 0 1 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 4.3843 + + 52 NaN NaN 117412.1 NaN 3809 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5852 35.219 NaN 323280 35 0 79062 0.261 + 27510 TAADDSSVKL 10 53 503.75622231357596 1005.4978916939519 2 503.75616455078125 MULTI HCD FTMS 0 0 0 5850 75115.40625 0.06558214038989797 12 -0.3353233337402344 2 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 35.61225514009592 0.18348312004207498 1 TAAD 4 6 49.884 0 0 4.9611 0 0 0 644.3280123346311 644.3280123346311 25.661837734644593 0 0 0 0 1.024227503252014 1.6989700043360187 0 0 + TAAD 4.9611 + + 38 + NaN NaN 128441 NaN 3810 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5853 35.223 NaN 56353 35 0 11089 0.261 -1 HVTQEDFEM 9 25 576.2373454770075 1150.4601380208148 2 576.237548828125 MULTI HCD FTMS 0 0 0 5850 24470.26171875 0.1731183633078952 33 -0.8787078857421875 3 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 36.506200033944 0.08138327636155518 1 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 -1 59.949 0 0 5.2108 0 0 465.2309642921023 0 465.2309642921023 0 59.94850021680094 0 0 0 1.9247425010840047 0 0.4247425010840047 0 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.2108 + + 23 + NaN NaN 92408.6 NaN 3811 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5854 35.226 NaN 129060 35 0 18504 0.261 + 2511 DSIVIQQGR 9 39 508.27993808377136 1014.5453232343427 2 508.2798767089844 MULTI HCD FTMS 0 0 0 5850 31918.232421875 0.8233396783671428 -1 0.01663970947265625 4 Unmodified _DSIVIQQGR_ ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1 36.12702656103203 0.08312389501731911 1 V{I|L}QQ{[NV]|[RG]} 6 3 30.054 0 0 2.9623 0 0 315.1417812288816 0 315.1417812288816 0 23.064338470346897 0 0 0 1.1861818737241734 0 0 0.4247425010840047 + V{I|L}QQ{[NV]|[RG]} 2.9623 + + 40 + NaN NaN 97145.2 NaN 3812 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5855 35.229 NaN 82339 35 0 7220 0.261 + 20606 PELWLNLNT 9 40 550.2935206337976 1098.572488334395 2 551.2985229492188 MULTI HCD FTMS 0 0 0 5850 22668.205078125 0.3901821761288052 4 -0.113037109375 5 Unmodified _PELWLNLNT_ REV__ENST00000434063.3_1_7:27139588-27139714:+|nuORF 10.073929032068715 0.27331982688540024 1 QVE 3 -1 14.157 0 0 1.2886 0 0 346.1935953674013 393.18808923892817 739.3816846063295 0 0 0 0 0 0 0 0.3494850021680094 0.5 QVE 1.2886 - 43 + NaN NaN 93907.8 NaN 3813 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5856 35.233 NaN 29217 35 0 5728.9 0.261 -1 AYPGWFLCT 9 19 557.7555796112023 1113.4966062892045 2 557.7547607421875 MULTI HCD FTMS 0 0 0 5850 16118.9443359375 0.6732872694699297 1 -0.029876708984375 6 Carbamidomethyl (C) _AYPGWFLC(Carbamidomethyl (C))T_ chr2:113058743-113059412|455|21.6|0.57|5.24|+|ENST00000346807|IL36RN,IL36RN;ENSG00000136695|ENST00000393200|IL36RN 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101820.1 NaN 3814 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5857 35.236 NaN 24311 35 0 4213.1 0.261 + 7568 FYFFADKQN 9 19 590.2769434902135 1178.539334047227 2 590.2766723632812 MULTI HCD FTMS 0 0 0 5850 14981.1181640625 0.7569333370964546 7 -0.18609237670898438 7 Unmodified _FYFFADKQN_ tr|U7SZ74|U7SZ74_FUSNUATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00870PE=4SV=1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83640 NaN 3815 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5858 35.239 NaN 14495 35 0 3716.8 0.261 -1 ICNMMRMMM 9 15 620.7196833215788 1239.4248137099576 2 620.7191772460938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 5 Oxidation (M) _ICNM(Oxidation (M))M(Oxidation (M))RM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))_ ENST00000381227.5_1_4:57845143-57852588:+|nuORF 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84901.7 NaN 3816 2040 5850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5860 35.245 NaN 159420 35 0 20795 0.327 + 25100 SAEPSPTVM 9 39 467.7128747434768 933.4111965537536 2 467.7128601074219 MULTI HCD FTMS 0 0 0 5859 111530.46875 0.8536885602001458 5 -0.13628768920898438 1 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 88.90359156742426 0.00455469703666567 1 {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 9 0 + 76.978 0 0 8.247 8.247 97.308 0 0 0 68.12645944157907 14.973024840566467 14.973024840566467 76.977978222181 0 2.2614393726401687 1.3979400086720375 1.2302046884880937 0 + + {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 8.247 + + 77 + NaN NaN 120967.4 NaN 3817 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5861 35.249 NaN 125870 35 0 13561 0.261 -1 MPGVLVIEGM 10 41 539.2699037222434 1076.5252545112867 2 539.282470703125 MULTI HCD FTMS 0 0 0 5859 4382.462890625 0.04049221455222938 -6 0.16617965698242188 2 2 Oxidation (M) _M(Oxidation (M))PGVLVIEGM(Oxidation (M))_ tr|U7SKM3|U7SKM3_FUSNU3-hydroxyacyl-[acyl-carrier-protein]dehydrataseFabZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabZPE=3SV=1 6.723162845929126 0.4397169348982109 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3 -1 23.301 0 0 2.1644 0 0 0 728.3328161170085 728.3328161170085 2.3316559547312465 0 0 0 0 0 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 2.1644 - 27 NaN NaN 94341 NaN 3818 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5862 35.253 NaN 113440 35 0 30572 0.261 -1 RYLEKPMEI 9 24 597.8131162390399 1193.6116795448797 2 597.8131103515625 MULTI HCD FTMS 0 0 0 5859 56533.90234375 0.07388493404537261 28 -0.7426185607910156 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 10.799506525563784 0.2670509983294061 1 KE 2 -1 19.464 0 0 1.6307 0 0 504.2258546577921 429.22568689517817 933.4515415529703 0 0 0 0 0 1 0 0 0 KE 1.6307 - 19 + NaN NaN 100359.3 NaN 3819 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5863 35.256 NaN 106150 35 0 6008.4 0.261 + 5662 FNSLNELQH 9 50 551.2700903728382 1100.5256278124764 2 551.7545166015625 MULTI HCD FTMS 0 0 0 5859 5018.94287109375 0.05300139713211089 -6 0.16617965698242188 4 Unmodified _FNSLNELQH_ REV__ENSG00000064666|ENST00000263097|CNN2;REV__ENST00000443067.1_1_1:166765603-166766044:+|nuORF;REV__nc|ENSG00000064666|Q99439-2|CNN2 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F}QVE 4 -1 17.652 0 0 1.6039 0 0 201.1087396391212 393.18772302799067 594.2964626671119 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}QVE 1.6039 - 70 + NaN NaN 91562.1 NaN 3820 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5864 35.259 NaN 143150 35 0 15686 0.261 -1 EVPATEEGM 9 41 489.70776504026634 977.4009771473327 2 489.70745849609375 MULTI HCD FTMS 0 0 0 5859 35395.05078125 0.6434982068813883 -3 0.07981491088867188 5 Oxidation (M) _EVPATEEGM(Oxidation (M))_ ENSG00000203740|ENST00000439373|NTMT2 26.88365393820708 0.12808753336095696 1 EEG{M(Oxidation (M))|F} 4 -1 43.928 0 0 4.4944 0 0 497.24806601177556 0 497.24806601177556 0 38.44335023848103 0 0 0 1.3494850021680094 0 0 0 EEG{M(Oxidation (M))|F} 4.4944 + + 20 NaN NaN 99344.1 NaN 3821 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5865 35.263 NaN 47137 35 0 7498.3 0.261 + 22607 QVADVVVSR 9 25 486.7775120583415 971.540471183483 2 486.77703857421875 MULTI HCD FTMS 0 0 0 5859 20875.515625 1 0 0 6 Unmodified _QVADVVVSR_ ENSG00000169710|ENST00000306749|FASN 7.101721422024254 0.29718071671418667 1 {[QV]|[N{I|L}]|[RA]|[KV]}WVVV{[QD]|[EN]|[WG]|[KD]|[RS]} 8 2 + 23.365 0 0 2.4049 2.4049 84.399 0 0 0 23.364875295848435 6.989700043360184 6.989700043360184 9.262137858390812 0 0 0 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}WVVV{[QD]|[EN]|[WG]|[KD]|[RS]};{[QV]|[N{I|L}]|[RA]|[KV]}{[DA]|[EG]}VVV{[QD]|[EN]|[WG]|[KD]|[RS]} 2.4049;1.4516 -;+ + 20 + NaN NaN 83320.6 NaN 3822 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5866 35.266 NaN 96763 35 0 8185.2 0.261 + 29558 VAAGSYQRF 9 41 499.7563473584439 997.4981417836879 2 499.7558288574219 MULTI HCD FTMS 0 0 0 5859 33200.3125 0.82581189773173 -1 0.029876708984375 7 Unmodified _VAAGSYQRF_ ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1 17.11289562659939 0.2125047172822487 1 {[VA]|[{I|L}G]}AGS 5 4 17.76 0 0 1.7804 0 0 0 609.2796724908811 609.2796724908811 7.275071725447404 0 0 0 0 0.3807196863200844 0 0.3494850021680094 0 + {[VA]|[{I|L}G]}AGS 1.7804 + + 41 + NaN NaN 98164 NaN 3823 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5867 35.269 NaN 18191 35 0 5735.9 0.261 + -1 IHNKFHCIA 9 14 570.292799400704 1138.5710458682079 2 570.7940673828125 MULTI HCD FTMS 0 0 0 5859 5231.22412109375 0.4003706481300996 2 -0.059864044189453125 8 Carbamidomethyl (C) _IHNKFHC(Carbamidomethyl (C))IA_ REV__ENSG00000163755|ENST00000296051|HPS3;REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF;REV__nc|ENSG00000163755|Q969F9-2|HPS3 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79113 NaN 3824 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5868 35.273 NaN 20606 35 0 3844.7 0.261 + 14926 LLEKIKKMKV 10 13 615.4039661889938 NaN 0 615.7716064453125 PEAK HCD FTMS 0 0 0 5859 5214.86279296875 0.6616646529748842 -1 0.029876708984375 9 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 0.35063188157827746 0.339884196735365 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87394.7 NaN 3825 2041 5859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5870 35.278 NaN 153110 35 0 13925 0.327 + 1475 AYSVEHNQL 9 37 530.7565184189167 1059.4984839046333 2 530.7564697265625 MULTI HCD FTMS 0 0 0 5869 95412.59375 0.15230471648314328 8 -0.21927261352539062 1 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 51.629811660486645 0.02929079705179888 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVE 5 4 52.263 0 0 4.9328 0 0 0 507.2313631647094 507.2313631647094 29.431890546242343 0 0 0 0 0.9247425010840047 2 0.3807196863200844 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVE 4.9328 + + 62 + NaN NaN 106103.6 NaN 3826 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5871 35.282 NaN 95662 35 0 14522 0.261 -1 MMDRMFAL 8 44 515.7293450611572 NaN 0 515.7293090820312 PEAK HCD FTMS 0 0 0 5869 21625.65234375 0.5567426429171871 2 -0.049938201904296875 2 Oxidation (M) _MMDRM(Oxidation (M))FAL_ ADC-ISOC1|1|fusion;ENSG00000066583|ENST00000173527|ISOC1 7.910154910731844 0.38822285293237185 1 A 1 -1 9.732 0 0 0.94536 0 0 131.09669499424473 824.2855929010374 955.3822878952822 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.94536 + + 10 + NaN NaN 109178.5 NaN 3827 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5872 35.286 NaN 172730 35 0 15397 0.263 -1 RYVRKFVLM 9 58 409.9057375497935 1226.6953832495806 3 409.9059143066406 MULTI HCD FTMS 0 0 0 5869 44156.32421875 0.3250314823400433 -12 0.3522453308105469 3 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 5.296884461304476 0.3108627248283497 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 3 -1 25.686 0 0 2.0939 0 0 0 832.516525177568 832.516525177568 5.201812293369841 0 0 0 0 0 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.0939 - 27 NaN NaN 103366.9 NaN 3828 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5873 35.289 NaN 54808 35 0 6796.8 0.261 + 13944 KYRDDTNI 8 32 512.756473578702 1023.4983942242039 2 512.7570190429688 MULTI HCD FTMS 0 0 0 5869 20093.603515625 0.6743341049647227 2 -0.049938201904296875 4 Unmodified _KYRDDTNI_ tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1 3.5964929083625545 0.5366564765791996 1 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 4 7 13.188 0 0 1.2885 0 0 561.247362205275 0 561.247362205275 0 7.703037561203843 0 0 0 0 0 0 0 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 1.2885 - 17 NaN NaN 89723.8 NaN 3829 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5874 35.293 NaN 30673 35 0 7044.4 0.261 + -1 WWPCMWCPE 9 18 627.2331071416546 1252.4516613501091 2 627.2334594726562 MULTI HCD FTMS 0 0 0 5869 15125.5185546875 0.1601871987181492 29 -0.7558174133300781 5 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102152.4 NaN 3830 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5875 35.296 NaN 66650 35 0 7763.4 0.261 + -1 EMSPRIGEM 9 24 541.2344208743662 1080.4542888155322 2 541.2343139648438 MULTI HCD FTMS 0 0 0 5869 27590.580078125 0.9137104788398166 -2 0.06309890747070312 6 2 Oxidation (M) _EM(Oxidation (M))SPRIGEM(Oxidation (M))_ REV__ENSG00000116128|ENST00000234739|BCL9 15.847184025352803 0.2234401846867398 1 E{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.6573 0 0 786.3657095692416 0 786.3657095692416 0 21.721675119240516 0 0 0 0.4247425010840047 0 0.5 0 E{M(Oxidation (M))|F} 2.6573 + + 8 + NaN NaN 88807.9 NaN 3831 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5876 35.299 NaN 40083 35 0 6977.1 0.261 + 3542 EINQNVEIQR 10 26 621.8255313427026 1241.636509752205 2 621.825927734375 MULTI HCD FTMS 0 0 0 5869 23296.98046875 0.877801567407393 -2 0.06309890747070312 7 Unmodified _EINQNVEIQR_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 16.565877749689598 0.3561603856738253 1 {[QN]|[E{I|L}]|[KN]}{[QN]|[E{I|L}]|[KN]}NVE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 10 0 + 30.903 0 0 2.4889 2.4889 82.907 0 0 0 24.820618910682484 7.269987279362624 7.269987279362624 9.164539485499251 0 0.4247425010840047 0 0 0 + + {[QN]|[E{I|L}]|[KN]}{[QN]|[E{I|L}]|[KN]}NVE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};{[QN]|[E{I|L}]|[KN]}{[QN]|[E{I|L}]|[KN]}GGVE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 2.4889;1.7508 +;- + 39 + NaN NaN 85565.7 NaN 3832 2042 5869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5878 35.305 NaN 401520 35 0 89084 0.327 + -1 PLFSMIAHI 9 35 522.7825573649653 1043.5505617967306 2 522.2757568359375 MULTI HCD FTMS 0 0 0 5877 151141.140625 0.8383948879321299 2 -0.0399017333984375 1 Oxidation (M) _PLFSM(Oxidation (M))IAHI_ REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant;REV__ENSG00000135905|ENST00000258390|DOCK10;REV__ENST00000472652.1_1_2:225702475-225704822:-|nuORF;REV__nc|ENSG00000135905|Q96BY6-3|DOCK10 16.942295170755138 0.21397866736869717 1 [{I|L}P][MT][YV]AH{I|L} 9 -1 + 43.618 0 0 4.1798 4.1798 89.506 0 0 0 9.065593385854527 30.123337350737245 9.065593385854527 43.61818737241734 0 0.3494850021680094 1.6989700043360187 0 0 [{I|L}P][MT][YV]AH{I|L} 4.1798 - 38 NaN NaN 138245.9 NaN 3833 2043 5877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5879 35.309 NaN 469220 35 0 43858 0.261 -1 MEEEAGQTSI 10 69 555.734440943786 1109.454328954372 2 555.734619140625 MULTI HCD FTMS 0 0 0 5877 134546.015625 0.8653924717107514 -1 0.026641845703125 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 19.361941925380144 0.3300069447713393 1 QTS{I|L} 4 -1 41.771 0 0 3.765 0 0 662.2213001935562 0 662.2213001935562 0 1.061062652429925 0 0 0 1 0 0.8494850021680094 0 QTS{I|L} 3.765 + + 231 NaN NaN 162336.2 NaN 3834 2043 5877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5880 35.313 NaN 192570 35 0 41423 0.261 -1 HSLPQEPVM 9 31 527.2553013462582 1052.4960497593163 2 527.2552490234375 MULTI HCD FTMS 0 0 0 5877 71414.515625 0.5396149602206947 -6 0.16954803466796875 3 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 31.26834338654808 0.10542797264966089 1 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 42.381 0 0 4.0267 4.0267 89.293 0 0 0 7.147642715192504 30.954387282529794 7.147642715192504 42.381062318217104 0 1.9247425010840047 0 0 0 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 4.0267 + + 34 NaN NaN 106484.9 NaN 3835 2043 5877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5881 35.316 NaN 84256 35 0 9399.6 0.263 + 12493 KRFLRWYF 8 45 405.89831100230134 NaN 0 405.8981018066406 PEAK HCD FTMS 0 0 0 5877 25022.37890625 0.4815885697342084 10 -0.2719612121582031 4 Unmodified _KRFLRWYF_ REV__ENST00000502508.5_1_5:33441192-33446243:+|nuORF 9.347437153973935 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94959.8 NaN 3836 2043 5877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5882 35.319 NaN 80691 35 0 15943 0.261 + 35195 YVLEQQRI 8 30 524.792955519735 1047.5713581062698 2 524.7929077148438 MULTI HCD FTMS 0 0 0 5877 21726.86328125 0.035135146778739114 27 -0.7093009948730469 5 Unmodified _YVLEQQRI_ ENSG00000162825|ENST00000698833|NBPF20;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000162825|P0DPF2|NBPF20 5.230669730166228 0.5342319408533849 1 [YV]MV 4 6 38.188 0 0 3.6453 0 0 0 552.3072949561323 552.3072949561323 31.197887582883936 0 0 0 0 0.5 2 0 0 [YV]MV 3.6453 - 20 NaN NaN 94016.6 NaN 3837 2043 5877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5883 35.323 NaN 27015 35 0 4869.1 0.261 + 1650 CCHLCHSDDM 10 17 582.1902514124475 1162.365949891695 2 582.190185546875 MULTI HCD FTMS 0 0 0 5877 10258.7822265625 0.5099030965045039 1 -0.023296356201171875 6 Unmodified _CCHLCHSDDM_ REV__ENSG00000099139|ENST00000674117|PCSK5;REV__nc|ENSG00000099139|Q92824|PCSK5 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90802.8 NaN 3838 2043 5877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5885 35.328 NaN 941740 35 0 134420 0.327 + 13897 KYQEVTNNL 9 79 554.785147411307 1107.5557418894139 2 554.7852783203125 MULTI HCD FTMS 0 0 0 5884 495985.84375 0.23819590924068626 -4 0.113037109375 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 136.39213081522345 0.00021731600835925866 1 [YK]QEVTNN{I|L} 9 0 + 78.399 0 0 7.0786 7.0786 87.467 0 0 0 4.137342758552691 44.097857090594616 4.137342758552691 5.216525140920609 0 2.531718309096375 0 0.6861818737241735 1.336696871556164 + + [YK]QEVTNN{I|L};[YQ]KEVTNN{I|L};[YK]QEVTGGN{I|L};[YK]QEVTNGG{I|L};[YK][AG]EVTNN{I|L};[YQ]EVKTNN{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YVKTNN{I|L};[YQ]KEVTGGN{I|L};[YQ]KEVTNGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]KTNN{I|L} 7.0786;6.6076;6.2472;6.2472;6.2472;6.1678;5.8587;5.7762;5.7762;5.5941 +;-;-;-;-;-;-;-;-;- + 2773 NaN NaN 221782.7 NaN 3839 2044 5884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5886 35.332 NaN 82220 35 0 10418 0.261 -1 ATSDMFYF 8 36 499.2014047861397 996.3882566390794 2 499.2017822265625 MULTI HCD FTMS 0 0 0 5884 34689.87890625 0.9247297641767596 -1 0.023296356201171875 2 Oxidation (M) _ATSDM(Oxidation (M))FYF_ ENSG00000150893|ENST00000280481|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2 18.13498045792455 0.4603629008820478 1 [TA]S 3 -1 35.458 0 0 3.5586 0 0 0 734.2503966579186 734.2503966579186 28.89075625191822 0 0 0 0 1 1.3010299956639813 0.5 0 [TA]S 3.5586 + + 32 + NaN NaN 92264.9 NaN 3840 2044 5884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5887 35.336 NaN 34149 35 0 5690.7 0.261 + 23113 REYLKLDK 8 25 532.8084616406329 1063.6023703480657 2 532.8084716796875 MULTI HCD FTMS 0 0 0 5884 13597.3466796875 0.10991295838552029 14 -0.3939933776855469 3 Unmodified _REYLKLDK_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 1.844237919475145 0.5392561982033289 1 K 1 7 6.9897 0 0 0.65717 0 0 374.2157259162282 558.2670382135374 932.4827641297657 0 0 0 0 0 0 0 0 0 + K 0.65717 + + 3 + NaN NaN 90618.9 NaN 3841 2044 5884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5888 35.339 NaN 20181 35 0 3661.7 0.261 -1 IFAEVMVCR 9 15 570.7805661523645 1139.5465793715289 2 571.2809448242188 MULTI HCD FTMS 0 0 0 5884 6270.25537109375 0.24574950300797865 -5 0.12967681884765625 4 Carbamidomethyl (C),Oxidation (M) _IFAEVM(Oxidation (M))VC(Carbamidomethyl (C))R_ ENSG00000105219|ENST00000430325|CCNP 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85235.1 NaN 3842 2044 5884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5890 35.344 NaN 1129600 35 0 112380 0.327 + 30681 VPENHSVAL 9 70 483.2561512518879 964.4977495705758 2 483.25616455078125 MULTI HCD FTMS 0 0 0 5889 846957.3125 0.4280377667608511 9 -0.2617607116699219 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 100.0907132914201 0.004261551473353346 1 [VP]ENHSVA{I|L} 9 0 + 82.043 0 0 8.5063 8.5063 91.087 0 0 0 15.576760784031421 14.343246711440187 14.343246711440187 8.322646798160562 0 1.9361818737241734 1.3010299956639813 1.1307196863200843 0.25 + + [VP]ENHSVA{I|L};[VP]ENHSAV{I|L};[VP]EGGHSVA{I|L};[VP]ENHSA{I|L}V;VPENHSVA{I|L};[EP]VNHSVA{I|L};[VP]EGGHSAV{I|L};[VP]EGGHSA{I|L}V;[EP]VNHSAV{I|L};[EP]VGGHSVA{I|L} 8.5063;7.6434;7.2924;7.0192;6.8913;6.8201;6.4295;6.0645;5.9572;5.6062 +;-;-;-;+;-;-;-;-;- + 1023 NaN NaN 253179.1 NaN 3843 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5891 35.349 NaN 301780 35 0 30326 0.261 + 1523 AYVHMVTHF 9 64 560.7657107079392 1119.5168684826783 2 560.765625 MULTI HCD FTMS 0 0 0 5889 125088.578125 0.10991691168103435 18 -0.5034027099609375 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 97.07464715276575 0.004340583992084827 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 89.831 0 0 8.0241 8.0241 93.058 0 0 0 12.231975075880328 16.478174818886373 12.231975075880328 12.231975075880328 0 2.75 2 0.6747425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]A[PA]H{M(Oxidation (M))|F};[Y{I|L}]GH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}NAAV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}N[Q{I|L}]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 8.0241;6.9315;5.104;4.9263;4.344;4.3188;3.0895;2.9813;2.9404;2.6019 +;-;-;-;-;-;-;-;-;- + 765 NaN NaN 119821.7 NaN 3844 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5892 35.352 NaN 240010 35 0 18423 0.261 + 9350 HPSERSFEL 9 49 551.2700903728382 1100.5256278124764 2 551.2702026367188 MULTI HCD FTMS 0 0 0 5889 91693.6171875 0.5392151304624279 -3 0.0665435791015625 3 Unmodified _HPSERSFEL_ ENSG00000156030|ENST00000423556|MIDEAS;nc|ENSG00000156030|Q6PJG2|MIDEAS 26.268140514670165 0.13340543277302316 1 HPNQVE 6 6 55.761 0 0 5.0668 0 0 0 393.1891268365844 393.1891268365844 35.31608098922889 0 0 0 0 0.5 0 1.3901668265424343 0.3494850021680094 HPNQVE 5.0668 - 146 + NaN NaN 113404.8 NaN 3845 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5893 35.356 NaN 124070 35 0 32981 0.261 + 25059 SAARDDAVF 9 33 476.2303193760477 950.4460858188954 2 476.2300109863281 MULTI HCD FTMS 0 0 0 5889 51823.33984375 0.10586935383662298 11 -0.3177452087402344 4 Unmodified _SAARDDAVF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 9.38312468134398 0.279288223203164 1 DYV{M(Oxidation (M))|F} 4 6 35.662 0 0 3.7521 0 0 408.21160203158917 0 408.21160203158917 0 31.057743964882718 0 0 0 1 0 0 0 DYV{M(Oxidation (M))|F} 3.7521 - 28 + NaN NaN 91732.3 NaN 3846 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5894 35.359 NaN 38132 35 0 9108.6 0.261 + -1 VHIQAETM 8 17 472.7290404436883 943.4435279541766 2 472.7289733886719 MULTI HCD FTMS 0 0 0 5889 23070.822265625 0.6975077109745914 7 -0.20568084716796875 5 Oxidation (M) _VHIQAETM(Oxidation (M))_ REV__ENSG00000151466|ENST00000281142|SCLT1;REV__nc|ENSG00000151466|Q96NL6-2|SCLT1;REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant 7.289230182591677 0.5311777711368266 1 T{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.2028 0 0 677.3504383901873 0 677.3504383901873 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 T{M(Oxidation (M))|F} 3.2028 + + 4 NaN NaN 79933.6 NaN 3847 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5895 35.362 NaN 68018 35 0 10262 0.261 -1 FPDAREQEIRM 11 24 469.89426890217305 1406.6609773067191 3 469.8939514160156 MULTI HCD FTMS 0 0 0 5889 23363.236328125 0.8715783452949105 -3 0.0665435791015625 6 Oxidation (M) _FPDAREQEIRM(Oxidation (M))_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 1.0135738785822086 0.41447547578978133 1 PE 2 -1 20.969 0 0 1.4907 0 0 1162.5398832820692 0 1162.5398832820692 0 20.969100130080562 0 0 0 0 0 0 0 PE 1.4907 - 1 NaN NaN 84486.6 NaN 3848 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5896 35.366 NaN 45396 35 0 5693.3 0.261 -1 VDMLGWHL 8 26 493.744041620953 985.473530308706 2 493.74285888671875 MULTI HCD FTMS 0 0 0 5889 11554.8623046875 0.6090849995320742 -2 0.0399017333984375 7 Oxidation (M) _VDM(Oxidation (M))LGWHL_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3 9.347437153973935 0.5250182646323369 1 T 1 -1 4.6041 0 0 0.4672 0 0 492.74707264444663 388.64582239322505 881.3928950376717 0 0 0 0 0 0 0 0 0 T 0.4672 - 10 + NaN NaN 92084.3 NaN 3849 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5897 35.369 NaN 45766 35 0 6534.3 0.261 + -1 QFCQLYEC 8 31 566.725594978968 1131.436637024736 2 566.7263793945312 MULTI HCD FTMS 0 0 0 5889 23775.095703125 1 0 0 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))QFCQLYEC(Carbamidomethyl (C))_ REV__ENST00000424460.1_1_7:8380649-8382766:+|nuORF 0.6903765706972694 0.5409681170271811 1 D[EP] 3 -1 10.458 0 0 0.92427 0 0 772.322069236525 0 772.322069236525 0 10.45757490560675 0 0 0 0 0 0 0 D[EP] 0.92427 - 1 NaN NaN 85759.4 NaN 3850 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5898 35.372 NaN 48165 35 0 6038.3 0.261 + 34984 YSSSARWHF 9 29 570.7635156294374 NaN 0 570.7801513671875 PEAK HCD FTMS 0 0 0 5889 5356.13671875 0.6115183241403325 -5 0.12964248657226562 9 Unmodified _YSSSARWHF_ REV__ENST00000355527.7_1_11:71155154-71155907:-|nuORF 2.0597508629832335 0.2852655770354268 1 T 1 -1 4.6041 0 0 0.40404 0 0 359.14530410868093 676.2953585260374 1035.4406626347184 0 0 0 0 0 0 0 0 0 T 0.40404 - 2 + NaN NaN 87394.6 NaN 3851 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5899 35.376 NaN 40364 35 0 6222.7 0.261 + 9324 HPRFKEPSP 9 20 547.7902901580203 1093.5660273828405 2 547.7897338867188 MULTI HCD FTMS 0 0 0 5889 5966.72119140625 0.4896609307490449 4 -0.11954879760742188 10 Unmodified _HPRFKEPSP_ ENST00000311764.2_1_11:46722587-46724291:+|nuORF;ENST00000531866.1_1_11:46722979-46723237:+|nuORF;ENST00000534481.1_1_11:46722838-46724291:+|nuORF 2.0597508629832335 0.3354026079994024 1 D 1 9 6.9897 0 0 0.63917 0 0 185.23089807872913 790.2877475841956 975.5186456629247 0 0 0 0 0 0 0 0 0 D 0.63917 - 2 + NaN NaN 92621.4 NaN 3852 2045 5889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5901 35.381 NaN 54610 35 0 7882.6 0.327 -1 HVTQEDFEM 9 28 576.2373454770075 1150.4601380208148 2 576.2376708984375 MULTI HCD FTMS 0 0 0 5900 20580.3984375 0.14559896966669478 39 -1.0114707946777344 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 33.4449034751529 0.0954363425218424 1 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 -1 55.618 0 0 4.8344 0 0 465.23051650215 0 465.23051650215 0 55.617515817243515 0 0 0 1.8807196863200843 0 0.4247425010840047 0 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.8344 + + 25 NaN NaN 93839.8 NaN 3853 2046 5900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5902 35.385 NaN 79295 35 0 23653 0.261 -1 ECFLMYWP 8 22 581.2405747407862 1160.4665965483723 2 581.2411499023438 MULTI HCD FTMS 0 0 0 5900 39616.82421875 0.5857927381365775 -2 0.053127288818359375 2 Carbamidomethyl (C),Oxidation (M) _EC(Carbamidomethyl (C))FLM(Oxidation (M))YWP_ ENST00000471527.1_1_7:43298212-43298281:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97510.1 NaN 3854 2046 5900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5903 35.389 NaN 218860 35 0 21548 0.261 -1 MPSASMTRL 9 51 505.2438541347541 1008.4731553363082 2 505.2437438964844 MULTI HCD FTMS 0 0 0 5900 50850.875 0.5656938582320216 -3 0.07642364501953125 3 Oxidation (M) _MPSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 19.361941925380144 0.1930734562688509 1 MPSA 4 -1 41.414 0 0 4.1066 0 0 0 619.2892410067301 619.2892410067301 37.43501263708417 0 0 0 0 0.805462187404089 0 0.3807196863200844 0 MPSA 4.1066 + + 14 + NaN NaN 112612.7 NaN 3855 2046 5900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5904 35.392 NaN 68862 35 0 5294.9 0.261 + 27740 TATGLLGLRS 10 38 494.7929628361176 987.5713727390353 2 494.7926940917969 MULTI HCD FTMS 0 0 0 5900 27353.517578125 0.502109289089304 -4 0.10306549072265625 4 Unmodified _TATGLLGLRS_ REV__ENST00000371975.8_1_1:46713825-46713966:+|nuORF 12.240655878213236 0.39661705172222156 1 [TA]NT 4 -1 42.435 0 0 4.2969 0 0 0 597.3707979791624 597.3707979791624 36.95046257204389 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 [TA]NT 4.2969 - 26 + NaN NaN 84179.8 NaN 3856 2046 5900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5905 35.396 NaN 51491 35 0 9189.1 0.261 + -1 ECRRGKQC 8 38 547.2528383202492 NaN 0 547.2349853515625 PEAK HCD FTMS 0 0 0 5900 2113.763671875 0.9072463279108327 -1 0.03652191162109375 5 2 Carbamidomethyl (C) _EC(Carbamidomethyl (C))RRGKQC(Carbamidomethyl (C))_ REV__ENST00000520134.1_1_5:179228789-179233279:-|nuORF;REV__ENST00000521305.5_1_5:179228789-179229839:-|nuORF 2.302733041254933 0.38822285293237185 1 D 1 -1 6.9897 0 0 0.63979 0 0 184.15394144224643 790.2847994440061 974.4387408862526 0 0 0 0 0 0 0 0 0 D 0.63979 - 1 + NaN NaN 90824.2 NaN 3857 2046 5900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5907 35.401 NaN 812890 35 0 96229 0.327 + 2598 DTVAQITQR 9 76 516.2776890459132 1030.5408251586264 2 516.2777709960938 MULTI HCD FTMS 0 0 0 5906 375605.59375 0.7711138776553719 -2 0.05644989013671875 1 Unmodified _DTVAQITQR_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 195.45211591753656 1.8365487807996522E-14 1 {[ES]|[DT]|[{I|L}C]}VAQ{I|L}TQR 9 0 + 99.669 0 0 9.6715 9.6715 93.568 0 0 0 7.147642715192504 14.190592584914427 7.147642715192504 9.208187539523749 0 2.4604093769761874 0 1.1936726795685342 1.7544321917401078 + + {[ES]|[DT]|[{I|L}C]}VAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}VA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}VAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}VA{I|L}QTQR;{[ES]|[DT]|[{I|L}C]}VA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}VA{I|L}QT[AG]R;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]TQR;{[ES]|[DT]|[{I|L}C]}VA{I|L}QA{[SA]|[TG]}R;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]T[AG]R;{[ES]|[DT]|[{I|L}C]}VA[TA]{[VA]|[{I|L}G]}QR 9.6715;8.7779;8.7779;8.2945;7.8887;7.4009;7.0618;6.3272;6.1725;5.8662 +;-;-;-;-;-;-;-;-;- + 631 + NaN NaN 213869.8 NaN 3858 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5908 35.405 NaN 1721200 35 0 157320 0.261 -1 MEEEAGQTSI 10 99 555.734440943786 1109.454328954372 2 555.7344360351562 MULTI HCD FTMS 0 0 0 5906 146750.140625 0.9438887233444904 3 -0.09627914428710938 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 19.361941925380144 0.3300069447713393 1 DNTK[NS]TS{I|L} 9 -1 40.502 0 0 3.6506 0 0 131.00064307730173 0 131.00064307730173 0 3.9104887236607624 0 0 0 0.9604093769761876 0 0.9916440611282626 0.8639829889124311 DNTK[NS]TS{I|L} 3.6506 - 3604 + NaN NaN 341378.7 NaN 3859 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5909 35.409 NaN 612350 35 0 55632 0.261 + 29771 VEEETVEVLT 10 62 574.2907481779872 1146.5669434227743 2 574.2906494140625 MULTI HCD FTMS 0 0 0 5906 189453.78125 0.042883288764576234 -7 0.18609237670898438 3 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 37.97399986684836 0.1629881689457739 1 {[TV]|[{I|L}S]}[WY]HEVT 8 -1 57.815 0 0 5.0425 0 0 0 128.07222801034405 128.07222801034405 22.382287586051106 0 0 0 0 1.274227503252014 1.3979400086720375 2.0994850021680094 0 {[TV]|[{I|L}S]}[WY]HEVT 5.0425 - 572 NaN NaN 178900.1 NaN 3860 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5910 35.412 NaN 347460 35 0 76792 0.261 + 4151 ETNYGIPQR 9 54 539.2699037222434 1076.5252545112867 2 539.2824096679688 MULTI HCD FTMS 0 0 0 5906 108229.765625 1 0 0 4 Unmodified _ETNYGIPQR_ ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF 31.26834338654808 0.10542797264966089 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3 8 23.557 0 0 2.1882 0 0 0 728.3338537146648 728.3338537146648 3.146281188574605 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 2.1882 - 150 NaN NaN 131855.7 NaN 3861 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5911 35.416 NaN 113470 35 0 10928 0.261 + 25101 SAEPSPTVM 9 48 467.7128747434768 933.4111965537536 2 467.7128601074219 MULTI HCD FTMS 0 0 0 5906 73745.859375 0.5644735220443173 11 -0.3209381103515625 5 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 54.773552608820026 0.024892918755467567 1 {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 9 0 {[SA]|[TG]}E + + 43.945 10.458 3.6423 4.708 4.708 61.094 0 0 0 0 33.48767215588211 0 0 0 1.3494850021680094 0 0.805462187404089 0 + + {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 4.708 + + 68 + NaN NaN 97498.4 NaN 3862 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5912 35.419 NaN 114790 35 0 42188 0.261 + 15019 LLLTQCFTQQ 10 27 597.8131162390399 1193.6116795448797 2 597.8131103515625 MULTI HCD FTMS 0 0 0 5906 55641.41796875 0.07271853394826892 34 -0.9017982482910156 6 Unmodified _LLLTQCFTQQ_ REV__ENSG00000167306|ENST00000285039|MYO5B;REV__nc|ENSG00000167306|Q9ULV0-2|MYO5B 5.731851221503515 0.44496410492002586 1 K 1 -1 11.99 0 0 1.0045 0 0 504.22596659280015 558.2676485650999 1062.4936151579 0 0 0 0 0 0.5 0 0 0 K 1.0045 - 3 + NaN NaN 98718.8 NaN 3863 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5913 35.422 NaN 223850 35 0 64160 0.264 + 14128 LADEVKLRQF 10 46 406.89933553808964 NaN 0 406.8901672363281 PEAK HCD FTMS 0 0 0 5906 1789.781494140625 0.3986676645306345 2 -0.06309890747070312 7 Unmodified _LADEVKLRQF_ REV__ENSG00000169375|ENST00000394947|SIN3A 3.876331618118854 0.3368666864104206 1 T 1 -1 6.9897 0 0 0.86103 0 0 579.6420720998137 128.07166467838127 707.713736778195 0 0 0 0 0 0 0 0 0 T 0.86103 - 4 + NaN NaN 110284 NaN 3864 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5914 35.426 NaN 134490 35 0 12825 0.261 -1 EVPATEEGM 9 45 489.70776504026634 977.4009771473327 2 489.70770263671875 MULTI HCD FTMS 0 0 0 5906 35916.99609375 0.6529874113116816 3 -0.09627914428710938 8 Oxidation (M) _EVPATEEGM(Oxidation (M))_ ENSG00000203740|ENST00000439373|NTMT2 14.838274106304384 0.23215694253501695 1 EEG{M(Oxidation (M))|F} 4 -1 29.412 0 0 3.0093 0 0 497.24778945136876 0 497.24778945136876 0 20.828956512079344 0 0 0 0.5 0 0 0 EEG{M(Oxidation (M))|F} 3.0093 + + 29 NaN NaN 102913.8 NaN 3865 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5915 35.429 NaN 44634 35 0 6679.6 0.261 + 8955 HPDTLREC 8 38 485.72236625075703 NaN 0 485.7223815917969 PEAK HCD FTMS 0 0 0 5906 12274.431640625 1 0 0 9 Unmodified _HPDTLREC_ REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF 10.823927491677226 0.38822285293237185 1 PD 2 -1 20.217 0 0 2.0854 0 0 137.05739011694533 617.2833346002561 754.3407247172015 0 0 0 0 0 0.5 0 0.4247425010840047 0 PD 2.0854 + + 5 + NaN NaN 88280.5 NaN 3866 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5916 35.432 NaN 73625 35 0 9739.2 0.261 + 156 AEIVEGENHTY 11 22 631.2886161363017 1260.5626793394033 2 631.2882080078125 MULTI HCD FTMS 0 0 0 5906 25243.751953125 0.20000665100055312 -4 0.09635162353515625 10 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 28.181266145913348 0.21306642658310945 1 {[CP]|[EA]}{I|L}VEGE 7 4 52.479 0 0 4.1631 0 0 0 530.1995943658811 530.1995943658811 31.509782128541133 0 0 0 0 1.5 0 0.4247425010840047 0 + {[CP]|[EA]}{I|L}VEGE 4.1631 + + 30 + NaN NaN 97511.9 NaN 3867 2047 5906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5918 35.437 NaN 326640 35 0 72605 0.327 + 4152 ETNYGIPQR 9 59 539.2699037222434 1076.5252545112867 2 539.27001953125 MULTI HCD FTMS 0 0 0 5917 100810.359375 0.9314476363581241 1 -0.026561737060546875 1 Unmodified _ETNYGIPQR_ ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF 32.78568957990786 0.09846250359632436 1 {I|L}GYN[DP] 6 7 23.633 0 0 2.1953 0 0 399.22258132649375 0 399.22258132649375 0 2.6638000898875447 0 0 0 1.1237125054200234 0 0 0 {I|L}GYN[DP] 2.1953 - 181 NaN NaN 132483.1 NaN 3868 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5919 35.442 NaN 324190 35 0 35031 0.263 -1 RYVRKFVLM 9 68 409.9057375497935 1226.6953832495806 3 409.9057922363281 MULTI HCD FTMS 0 0 0 5917 66344.28125 0.4883554159228584 -6 0.1595306396484375 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 1 {I|L}{M(Oxidation (M))|F} 2 -1 26.836 0 0 2.1877 0 0 948.5655562496975 0 948.5655562496975 0 6.378493940035455 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 2.1877 + + 52 NaN NaN 127975.7 NaN 3869 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5920 35.445 NaN 60538 35 0 5960 0.261 + 1476 AYSVEHNQL 9 32 530.7565184189167 1059.4984839046333 2 530.7564086914062 MULTI HCD FTMS 0 0 0 5917 47365.0234375 0.07560759206240397 14 -0.3905448913574219 3 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 13.90604991867851 0.24021115267848145 1 C{I|L} 2 8 25.217 0 0 2.38 0 0 825.3975552334867 0 825.3975552334867 0 23.226825097560422 0 0 0 0.4247425010840047 0 0 0 C{I|L} 2.38 - 4 NaN NaN 87632.7 NaN 3870 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5921 35.449 NaN 37502 35 0 10633 0.261 + -1 QFCQLYEC 8 16 566.725594978968 1131.436637024736 2 566.724853515625 MULTI HCD FTMS 0 0 0 5917 13261.693359375 0.5577976856527178 3 -0.08962249755859375 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))QFCQLYEC(Carbamidomethyl (C))_ REV__ENST00000424460.1_1_7:8380649-8382766:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89483.1 NaN 3871 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5922 35.452 NaN 40296 35 0 4060.5 0.261 + 8907 HPDESGSKFQL 11 24 622.7993778930571 1243.5842028529141 2 622.799560546875 MULTI HCD FTMS 0 0 0 5917 29391.076171875 0.4189299710617596 -7 0.19275283813476562 5 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 5.868138319507137 0.39318500527288264 1 HPD 3 8 31.198 0 0 2.5087 0 0 0 891.4191988580686 891.4191988580686 24.20818753952375 0 0 0 0 0.5 0 0 0 + HPD 2.5087 + + 7 + NaN NaN 84253.3 NaN 3872 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5923 35.455 NaN 45247 35 0 5530.7 0.261 + 22230 QNESFYFF 8 29 541.2344208743662 1080.4542888155322 2 542.2384033203125 MULTI HCD FTMS 0 0 0 5917 3063.75390625 0.2978626562557411 1 -0.026561737060546875 6 Unmodified _QNESFYFF_ REV__ENST00000535179.1_1_12:14619386-14628955:+|nuORF 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84142.6 NaN 3873 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5924 35.459 NaN 56661 35 0 7517.6 0.262 -1 YMVYLRGCSM 10 40 437.8576795603408 NaN 0 437.52374267578125 PEAK HCD FTMS 0 0 0 5917 2109.460205078125 1 0 0 7 Carbamidomethyl (C),2 Oxidation (M) _YM(Oxidation (M))VYLRGC(Carbamidomethyl (C))SM(Oxidation (M))_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|276|3|anti-sense 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87014.4 NaN 3874 2048 5917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5926 35.464 NaN 2954800 35 0 416060 0.327 + 13898 KYQEVTNNL 9 113 554.785147411307 1107.5557418894139 2 554.7855224609375 MULTI HCD FTMS 0 0 0 5925 1969288.375 0.9457456113942536 1 -0.03318023681640625 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 176.4269993864032 3.292532597148328E-10 1 [YK]QEVTNN{I|L} 9 0 + 94.324 0 0 8.5164 8.5164 87.813 0 0 0 0.9442183903602341 14.928702923165389 0.9442183903602341 0.9442183903602341 0 2.6747425010840047 0 1.4049471895720984 1.4476212463643423 + + [YK]QEVTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNN{I|L};{[HG]|PP}PQEVTNN{I|L};[YQ]KEVTNN{I|L};[YK]QEVTGGN{I|L};[YK][AG]EVTNN{I|L};[YK]QEVTNGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTGGN{I|L};{[HG]|PP}PQEVTGGN{I|L} 8.5164;8.4312;8.3432;7.974;7.685;7.685;7.685;7.6037;7.6037;7.5157 +;-;-;-;-;-;-;-;-;- + 10487 NaN NaN 539008.1 NaN 3875 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5927 35.468 NaN 293100 35 0 65273 0.261 -1 HSLPQEPVM 9 43 527.2553013462582 1052.4960497593163 2 527.2551879882812 MULTI HCD FTMS 0 0 0 5925 132343.46875 1 0 0 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 34.93206674587334 0.08860942999206235 1 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 49.371 0 0 4.6908 4.6908 90.508 0 0 0 7.147642715192504 33.172874778693355 7.147642715192504 49.37076236157729 0 2.274227503252014 0 0.3494850021680094 0 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 4.6908 + + 50 NaN NaN 129715.6 NaN 3876 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5928 35.472 NaN 102710 35 0 9290.7 0.261 + 28911 TWHKQDAL 8 44 499.7563473584439 997.4981417836879 2 499.74322509765625 MULTI HCD FTMS 0 0 0 5925 7214.1630859375 0.17944233833775633 7 -0.1981964111328125 3 Unmodified _TWHKQDAL_ REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF 5.230669730166228 0.5342319408533849 1 E{[VA]|[{I|L}G]} 3 -1 14.705 0 0 1.4742 0 0 680.3395857307567 0 680.3395857307567 0 3.735899786366234 0 0 0 0 0 0.4247425010840047 0 E{[VA]|[{I|L}G]} 1.4742 - 12 + NaN NaN 103636.2 NaN 3877 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5929 35.475 NaN 48949 35 0 5671.7 0.261 + 11784 KEEGKDRTE 9 22 546.2718837991354 1090.5292146650706 2 546.2718505859375 MULTI HCD FTMS 0 0 0 5925 14387.1640625 0.7239506946458496 1 -0.03318023681640625 4 Unmodified _KEEGKDRTE_ REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF 8.155526934196011 0.2891920862272901 1 K[WE]K 4 -1 23.94 0 0 2.1953 0 0 0 516.2121065729124 516.2121065729124 23.940162615404077 0 0 0 0 0.5 0 0 0.4247425010840047 K[WE]K 2.1953 - 5 + NaN NaN 84924.8 NaN 3878 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5930 35.479 NaN 70925 35 0 12744 0.261 + 9860 IAAGEVIQR 9 31 478.7801876849465 955.545822436693 2 478.78033447265625 MULTI HCD FTMS 0 0 0 5925 37066.15234375 0.8912666912880503 -2 0.06309890747070312 5 Unmodified _IAAGEVIQR_ ENSG00000076242|ENST00000231790|MLH1 36.506200033944 0.08138327636155518 1 {I|L}AAGEV{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 82.089 0 0 8.5907 8.5907 93.557 0 0 0 76.14638779968487 7.147642715192504 7.147642715192504 10.72559982972642 0 1.3494850021680094 1.6989700043360187 0 0 + + {I|L}AAGEV{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};{I|L}AQEV{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 8.5907;7.4683 +;- + 55 + NaN NaN 96061.2 NaN 3879 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5931 35.482 NaN 31829 35 0 5613 0.261 + 12823 KYEQGYQKS 9 21 565.7762841977906 NaN 0 565.7754516601562 PEAK HCD FTMS 0 0 0 5925 10729.8642578125 0.6019069165455171 1 -0.03318023681640625 6 Unmodified _KYEQGYQKS_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 2.9952420565917617 0.2807323172627736 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82661.4 NaN 3880 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5932 35.485 NaN 54338 35 0 13188 0.261 -1 IYNGDMEKI 9 26 549.7605488059783 1097.5065446787564 2 549.7601928710938 MULTI HCD FTMS 0 0 0 5925 26746.50390625 0.7813193928099178 -2 0.06309890747070312 7 Oxidation (M) _IYNGDM(Oxidation (M))EKI_ BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant;ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28733783-28734191:+|nuORF 9.38312468134398 0.279288223203164 1 [Y{I|L}]N 3 -1 34.705 0 0 3.1622 0 0 0 704.2950533502561 704.2950533502561 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]N 3.1622 + + 3 + NaN NaN 100399.4 NaN 3881 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5933 35.489 NaN 139320 35 0 13450 0.261 + 4706 EYQKVGQSF 9 56 543.2668222455577 1084.5190915579153 2 543.2684326171875 MULTI HCD FTMS 0 0 0 5925 25284.3828125 0.4691471075213982 -1 0.026561737060546875 8 Unmodified _EYQKVGQSF_ ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0-3|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 21.536976647645854 0.1742816388551942 1 NRQG 4 7 25.918 0 0 2.3898 0 0 0 626.293940676898 626.293940676898 4.948500216800937 0 0 0 0 0 0 0 0 NRQG 2.3898 - 122 + NaN NaN 98656.6 NaN 3882 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5934 35.492 NaN 94138 35 0 19864 0.262 + 174 AENRIFEKNW 10 45 436.2237004441139 1305.6492719325418 3 436.22357177734375 MULTI HCD FTMS 0 0 0 5925 10627.3349609375 0.40108084492409923 -5 0.1361541748046875 9 Unmodified _AENRIFEKNW_ tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 3.3196427980023873 0.4577323075863651 1 K 1 9 6.9897 0 0 0.53534 0 0 662.2501763288293 512.2832125299436 1174.533388858773 0 0 0 0 0 0 0 0 0 + K 0.53534 + + 5 + NaN NaN 93007 NaN 3883 2049 5925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5936 35.497 NaN 501700 35 0 48244 0.326 + 30682 VPENHSVAL 9 70 483.2561512518879 964.4977495705758 2 483.2560729980469 MULTI HCD FTMS 0 0 0 5935 305555.59375 0.15442258073666004 14 -0.36724853515625 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 55.50274090549119 0.023872834264864425 1 [VP]E[HN]SVA{I|L} 9 0 + 59.688 0 0 6.1885 6.1885 89.708 0 0 0 13.656199575899635 23.50256837818165 13.656199575899635 11.817496819840656 0 1.055462187404089 1.3010299956639813 0.9802046884880937 0 + + [VP]E[HN]SVA{I|L};[VP]E[HN]SAV{I|L};[VP]E[HN]SA{I|L}V;[EP]V[HN]SVA{I|L};[EP]V[HN]SAV{I|L};[VP]E[HN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[EP]V[HN]SA{I|L}V;[EP]V[HN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 6.1885;4.9633;4.2664;4.1903;2.965;2.6345;2.2681;0.63626 +;-;-;-;-;-;-;- + 239 NaN NaN 153320.4 NaN 3884 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5937 35.502 NaN 342290 35 0 29903 0.261 + 9351 HPSERSFEL 9 60 551.2700903728382 1100.5256278124764 2 551.2704467773438 MULTI HCD FTMS 0 0 0 5935 139918.90625 0.822809630614497 2 -0.052951812744140625 2 Unmodified _HPSERSFEL_ ENSG00000156030|ENST00000423556|MIDEAS;nc|ENSG00000156030|Q6PJG2|MIDEAS 26.268140514670165 0.13340543277302316 1 HPNQVE 6 6 53.409 0 0 4.8531 0 0 0 393.18930994205317 393.18930994205317 32.96388461952553 0 0 0 0 0.5 0 1.5044321917401078 0 HPNQVE 4.8531 - 225 + NaN NaN 134812.8 NaN 3885 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5938 35.505 NaN 239290 35 0 23808 0.261 + 5103 FEIANAATHF 10 61 560.7764892578125 NaN 0 560.7650146484375 PEAK HCD FTMS 0 0 0 5935 11466.6240234375 1 0 0 3 Unmodified _FEIANAATHF_ REV__ENST00000258341.4_1_1:183113057-183113138:+|nuORF 10.150570793230772 0.3314968072639206 1 HTV{M(Oxidation (M))|F}HV 6 -1 29.462 0 0 2.6316 0 0 165.10040553229095 231.0770205133422 396.1774260456332 0 0 0 0 0 0.5 0 0.7742275032520141 0 HTV{M(Oxidation (M))|F}HV 2.6316 - 227 + NaN NaN 107896.4 NaN 3886 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5939 35.508 NaN 377890 35 0 95356 0.263 + 8909 HPDESGSKFQL 11 63 415.5348502867763 1243.582721460529 3 415.5348815917969 MULTI HCD FTMS 0 0 0 5935 75050.1328125 0.7370096750761606 -6 0.16933441162109375 4 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 9.243775137331637 0.3765410959215665 1 {I|L} 1 10 21.99 0 0 1.7683 0 0 1112.4880539574024 0 1112.4880539574024 0 7.04119982655925 0 0 0 0.5 0 0 0 + {I|L} 1.7683 + + 17 + NaN NaN 134101 NaN 3887 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5940 35.512 NaN 227290 35 0 27384 0.261 -1 MMKDLPIL 8 43 496.76162823846886 991.5087035437377 2 496.76141357421875 MULTI HCD FTMS 0 0 0 5935 100048.0390625 0.8566616845829248 -2 0.059741973876953125 5 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))KDLPIL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 21.74664581756881 0.4337896562907935 1 {I|L}PEH[WY] 6 -1 12.396 0 0 1.2502 0 0 148.1206868292124 0 148.1206868292124 0 -2.7545373444029053 -2.7545373444029053 0 0 0 0 0 0 {I|L}PEH[WY] 1.2502 - 67 + NaN NaN 109827.4 NaN 3888 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5941 35.515 NaN 75746 35 0 16618 0.261 + 30797 VPTEENEM 8 27 474.7025791032736 947.3906052733472 2 474.70245361328125 MULTI HCD FTMS 0 0 0 5935 32232.818359375 0.7534069526239175 1 -0.029880523681640625 6 Unmodified _VPTEENEM_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 14.838274106304384 0.4846187982323419 1 VNEM 4 4 40.037 0 0 4.226 0 0 456.1765309064469 0 456.1765309064469 0 33.047444008242906 0 0 0 0.8807196863200843 0 0 0.3807196863200844 VNEM 4.226 - 27 NaN NaN 89289.4 NaN 3889 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5942 35.518 NaN 172430 35 0 15039 0.261 + 4707 EYQKVGQSF 9 56 543.2668222455577 1084.5190915579153 2 543.2667236328125 MULTI HCD FTMS 0 0 0 5935 53894.359375 1 0 0 7 Unmodified _EYQKVGQSF_ ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0-3|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 28.494509381512117 0.11816142465008336 1 NRQG 4 7 24.949 0 0 2.3004 0 0 0 626.2943514855526 626.2943514855526 8.152121138338586 0 0 0 0 0 0 0 0 NRQG 2.3004 - 150 + NaN NaN 105679.6 NaN 3890 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5943 35.522 NaN 20901 35 0 6507.7 0.261 -1 TNLTCCMEHGE 11 9 627.2331071416546 1252.4516613501091 2 627.2330322265625 MULTI HCD FTMS 0 0 0 5935 15541.583984375 0.1645935505019992 37 -0.9483489990234375 8 Oxidation (M) _TNLTCCM(Oxidation (M))EHGE_ ENSG00000026751|ENST00000368043|SLAMF7;nc|ENSG00000026751|Q9NQ25-2|SLAMF7;nc|ENSG00000026751|Q9NQ25-3|SLAMF7;nc|ENSG00000026751|Q9NQ25-5|SLAMF7;nc|ENSG00000026751|Q9NQ25-7|SLAMF7 0.26902006276349055 0.4177408358971266 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78397.6 NaN 3891 2050 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5945 35.527 NaN 305600 35 0 66145 0.327 + 28481 TPPPDDPRL 9 38 504.2616039523 1006.5086549714 2 504.2613220214844 MULTI HCD FTMS 0 0 0 5944 59148.984375 0.5621548888349172 -3 0.08962249755859375 1 Unmodified _TPPPDDPRL_ ENSG00000110025|ENST00000377244|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;nc|ENSG00000110025|Q9NRS6-2|SNX15 13.042465956692817 0.2476723265019929 1 [TP]P 3 6 32.447 0 0 3.2237 0 0 0 708.3311861627561 708.3311861627561 27.84318117920506 0 0 0 0 0.5 1.6989700043360187 0 0 + [TP]P 3.2237 + + 6 + NaN NaN 135661.6 NaN 3892 2051 5944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5946 35.531 NaN 242090 35 0 23292 0.261 + 21049 PLTSTSRHF 9 58 523.2771739453725 NaN 0 523.2654418945312 PEAK HCD FTMS 0 0 0 5944 8764.46484375 1 0 0 2 Unmodified _PLTSTSRHF_ ENST00000575300.1_1_16:4312060-4322792:-|nuORF 8.593279151180031 0.2536050107310812 1 PK 2 8 12.959 0 0 1.2406 0 0 114.0819393810121 702.2700899713499 816.352029352362 0 0 0 0 0 0 0 0 0.5 PK 1.2406 - 28 + NaN NaN 113937.5 NaN 3893 2051 5944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5947 35.535 NaN 63278 35 0 16117 0.261 -1 SQNDWKCSH 9 13 581.2405747407862 1160.4665965483723 2 581.2406005859375 MULTI HCD FTMS 0 0 0 5944 28717.763671875 0.4246341736434517 3 -0.07915115356445312 3 Carbamidomethyl (C) _SQNDWKC(Carbamidomethyl (C))SH_ ENSG00000119938|ENST00000238994|PPP1R3C 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91041.2 NaN 3894 2051 5944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5948 35.538 NaN 327700 35 0 50296 0.261 + 9349 HPSDLREY 8 52 508.743320921646 1015.472088910092 2 508.74334716796875 MULTI HCD FTMS 0 0 0 5944 58142.515625 0.74877834477073 -3 0.08962249755859375 4 Unmodified _HPSDLREY_ ENSG00000114656|ENST00000645291|CFAP92 16.942295170755138 0.46913822049235215 1 TVEHQQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 8 + 37.63 0 0 3.7056 3.7056 85.159 0 0 0 16.66054693457547 4.269856214892378 4.269856214892378 9.262137858390808 0 0 0 0.3807196863200844 0 TVEHQQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TVEHQ[AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TVEH[AG]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TVEH[AG][AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TH{NN|[MP]|[D{I|L}]|[EV]}QQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};E{[TV]|[{I|L}S]}HQQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};HT{NN|[MP]|[D{I|L}]|[EV]}QQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TH{NN|[MP]|[D{I|L}]|[EV]}Q[AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TH{NN|[MP]|[D{I|L}]|[EV]}[AG]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};E{[TV]|[{I|L}S]}HQ[AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3.7056;2.7935;2.7935;1.8867;1.5627;1.0923;1.0132;0.65059;0.65059;0.18024 -;-;-;-;-;-;-;-;-;- 110 + NaN NaN 128627.1 NaN 3895 2051 5944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5949 35.542 NaN 46084 35 0 6390.1 0.261 + -1 MYGINSGCPVC 11 22 600.7463882216149 1199.4782235100297 2 600.746826171875 MULTI HCD FTMS 0 0 0 5944 21414.703125 0.8453168810374667 -1 0.029880523681640625 5 Carbamidomethyl (C) _MYGINSGC(Carbamidomethyl (C))PVC_ REV__ENSG00000135333|ENST00000369303|EPHA7;REV__nc|ENSG00000135333|Q15375-2|EPHA7;REV__nc|ENSG00000135333|Q15375-4|EPHA7;REV__nc|ENSG00000135333|Q15375-5|EPHA7 1.4819007175156935 0.4124215533673021 1 C 1 -1 1.2591 0 0 0.10497 0 0 674.2887226328797 419.1647127740844 1093.4534354069642 0 0 0 0 0 0 0 0 0 C 0.10497 + + 2 + NaN NaN 83177.8 NaN 3896 2051 5944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5950 35.545 NaN 43080 35 0 7616.4 0.261 + -1 PHCIAVYRD 9 31 565.7762841977906 NaN 0 565.7747802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _PHC(Carbamidomethyl (C))IAVYRD_ REV__ENSG00000125510|ENST00000336866|OPRL1;REV__ENSG00000136834|ENST00000259357|OR1J1;REV__ENSG00000161807|ENST00000541538|OR7G1;REV__ENSG00000167332|ENST00000396950|OR51E2;REV__ENSG00000170923|ENST00000641081|OR7G2;REV__ENSG00000171180|ENST00000641868|OR2M4;REV__ENSG00000171505|ENST00000304880|OR1N1;REV__ENSG00000171561|ENST00000641541|OR2AT4;REV__ENSG00000171942|ENST00000305899|OR10H2;REV__ENSG00000172519|ENST00000642092|OR10H5;REV__ENSG00000172772|ENST00000395079|OR10W1;REV__ENSG00000176231|ENST00000322107|OR10H4;REV__ENSG00000177275|ENST00000318244|OR2AJ1;REV__ENSG00000178586|ENST00000641019|OR6B3;REV__ENSG00000180475|ENST00000316770|OR10Q1;REV__ENSG00000180785|ENST00000396952|OR51E1;REV__ENSG00000180934|ENST00000641900|OR56A1;REV__ENSG00000181023|ENST00000317121|OR56B1;REV__ENSG00000182083|ENST00000319423|OR6B2;REV__ENSG00000182783|ENST00000641069|OR2T29;REV__ENSG00000183313|ENST00000332249|OR52L1;REV__ENSG00000183389|ENST00000641156|OR56A4;REV__ENSG00000184022|ENST00000642090|OR2T10;REV__ENSG00000184478|ENST00000641160|OR56A3;REV__ENSG00000186306|ENST00000334438|OR10T2;REV__ENSG00000186723|ENST00000641419|OR10H1;REV__ENSG00000187080|ENST00000366480|OR2AK2;REV__ENSG00000188124|ENST00000641124|OR2AG2;REV__ENSG00000189181|ENST00000342623|OR14I1;REV__ENSG00000196098|ENST00000354924|OR5K4;REV__ENSG00000196119|ENST00000284287|OR8A1;REV__ENSG00000196944|ENST00000366473|OR2T4;REV__ENSG00000197233|ENST00000335302|OR1J2;REV__ENSG00000203661|ENST00000641363|OR2T5;REV__ENSG00000212807|ENST00000641810|OR2A42;REV__ENSG00000221858|ENST00000641592|OR2A12;REV__ENSG00000221888|ENST00000641256|OR1C1;REV__ENSG00000221933|ENST00000641663|OR2A25;REV__ENSG00000221970|ENST00000641044|OR2A1;REV__ENSG00000221989|ENST00000408979|OR2A2;REV__ENSG00000239590|ENST00000340750|OR1J4;REV__ENSG00000244623|ENST00000316368|OR2AE1;REV__ENSG00000279486|ENST00000641258|OR2AG1;REV__ENST00000479887.1_1_7:143947766-143948387:-|nuORF;REV__nc|ENSG00000125510|P41146-2|OPRL1;REV__nc|ENSG00000176510|Q8NH08|OR10AC1;REV__nc|ENSG00000180934|Q8NGH5|OR56A1;REV__nc|ENSG00000181109|Q8NH57|OR52P1;REV__nc|ENSG00000187080|Q8NG84|OR2AK2;REV__nc|ENSG00000196119|Q8NGG7|OR8A1;REV__nc|ENSG00000196944|Q8NH00|OR2T4;REV__nc|ENSG00000220721|Q8NHA8|OR1F12P;REV__nc|ENSG00000262980|Q8NGH6|OR52L2P;REV__OR1J4|p.A119P|1|0.54|ENSG00000239590|chr9:122519495-122519495|G/C|missense_variant;REV__OR2A2|p.Y119N|1|0.7|ENSG00000221989|chr7:144109937-144109937|T/A|missense_variant;REV__OR56A1|p.N198*|1|0.1|ENSG00000180934|chr11:6027113-6027114|-/A|frameshift_variant;REV__OR56B1|p.L187Cfs*34|1|0.27|ENSG00000181023|chr11:5737074-5737074|C/-|frameshift_variant 2.302733041254933 0.2840881193086663 1 T 1 -1 10.485 0 0 0.92822 0 0 132.07584585827425 893.3888203580284 1025.4646662163027 0 0 0 0 0 0 0 0.5 0 T 0.92822 - 1 + NaN NaN 89181.1 NaN 3897 2051 5944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5952 35.55 NaN 5776400 35 0 472710 0.327 + 10763 ISELEDLSEL 10 110 574.2907481779872 1146.5669434227743 2 574.291259765625 MULTI HCD FTMS 0 0 0 5951 3870184.75 0.8760250078487641 -2 0.052951812744140625 1 Unmodified _ISELEDLSEL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 65.23502041540118 0.023231415588018726 1 {[TV]|[{I|L}S]}[DP]HHEVT{I|L} 10 7 + 88.739 0 0 7.7395 7.7395 87.005 0 0 0 5.790587192642249 5.790587192642249 5.790587192642249 1.7609125905568135 0 1.7302046884880937 1.3979400086720375 2.4604093769761874 0 {[TV]|[{I|L}S]}[DP]HHEVT{I|L};{[TV]|[{I|L}S]}[HD]PHEVT{I|L};HP{I|L}SDHEVT{I|L};{I|L}HPSDHEVT{I|L};H{I|L}PSDHEVT{I|L};{[TV]|[{I|L}S]}[DP]HEHVT{I|L};{[TV]|[{I|L}S]}[HD]PEHVT{I|L};{[TV]|[{I|L}S]}EHDPHVT{I|L};{[YC]|[HE]}VSPHEVT{I|L};[{I|L}T]DHDPHVT{I|L} 7.7395;7.5859;7.2345;7.0471;7.0449;6.8601;6.7065;6.6621;6.6547;6.1131 -;-;-;-;-;-;-;-;-;- 12865 NaN NaN 958188.6 NaN 3898 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5953 35.554 NaN 456230 35 0 45770 0.261 + 2599 DTVAQITQR 9 77 516.2776890459132 1030.5408251586264 2 516.2777099609375 MULTI HCD FTMS 0 0 0 5951 206914.96875 0.4247940034778904 3 -0.08237838745117188 2 Unmodified _DTVAQITQR_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 117.76058876431921 0.001675465467887476 1 {[ES]|[DT]|[{I|L}C]}VA{I|L}QTQR 9 2 + 78.469 0 0 7.6144 7.6144 90.848 0 0 0 1.073076767670912 1.073076767670912 1.073076767670912 9.208187539523749 0 2.5713337517843655 0 0.3252574989159953 1.0629529932484498 {[ES]|[DT]|[{I|L}C]}VA{I|L}QTQR;{[ES]|[DT]|[{I|L}C]}VA{I|L}QT[AG]R;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]TQR;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]T[AG]R;{[ES]|[DT]|[{I|L}C]}VA{I|L}QA{[SA]|[TG]}R;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]A{[SA]|[TG]}R;{[MG]|[TS]}[TP]{I|L}QTQR;{[MG]|[TS]}[TP]{I|L}[AG]TQR;{[MG]|[TS]}[TP]{I|L}QT[AG]R;{[MG]|[TS]}[TP]{I|L}QA{[SA]|[TG]}R 7.6144;6.7209;6.6167;5.7274;5.543;4.6537;4.286;3.3925;3.3925;2.3188 -;-;-;-;-;-;-;-;-;- 596 + NaN NaN 149881 NaN 3899 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5954 35.558 NaN 175270 35 0 16583 0.261 + -1 LDRTFSSCMAA 11 44 609.2679248014338 1216.5212966696674 2 609.2680053710938 MULTI HCD FTMS 0 0 0 5951 112695.1484375 0.7619778067367916 -1 0.0230712890625 3 Oxidation (M) _LDRTFSSCM(Oxidation (M))AA_ REV__ENST00000601416.1_19:21281704-21301132:+|nuORF 14.405379775768559 0.3315678654765638 1 {I|L}[YR]EGTS{I|L}S 9 -1 59.86 0 0 4.9206 0 0 0 206.99006067447502 206.99006067447502 49.402821967095605 0 0 0 0 2.742992819099939 0 1.610924374808178 0 {I|L}[YR]EGTS{I|L}S 4.9206 - 75 + NaN NaN 104566.4 NaN 3900 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5955 35.561 NaN 170010 35 0 20347 0.261 + 4153 ETNYGIPQR 9 57 539.2699037222434 1076.5252545112867 2 539.2823486328125 MULTI HCD FTMS 0 0 0 5951 32458.162109375 0.2999005118595349 5 -0.14188003540039062 4 Unmodified _ETNYGIPQR_ ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF 6.723162845929126 0.3000504726104499 1 ESQ{I|L} 4 7 21.402 0 0 1.9881 0 0 601.32133681465 0 601.32133681465 0 0.4330502818412185 0 0 0 0 0 0 0 ESQ{I|L} 1.9881 - 64 NaN NaN 105000.4 NaN 3901 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5956 35.565 NaN 201700 35 0 16695 0.261 + 32128 VYSHVIQKL 9 62 543.8189129052427 1085.6232728772852 2 543.81884765625 MULTI HCD FTMS 0 0 0 5951 64290.3203125 1 0 0 5 Unmodified _VYSHVIQKL_ ENSG00000135094|ENST00000257549|SDS 38.175570920033316 0.07371992880350783 1 [YV]SHV{I|L}Q[K{I|L}] 9 0 + 49.765 0 0 4.584 4.584 85.553 0 0 0 20.295540574256776 4.762036441594191 4.762036441594191 9.208187539523749 0 1.5484550065040281 1.6989700043360187 0 0 + + [YV]SHV{I|L}Q[K{I|L}];[YV]SHV{I|L}[AG][K{I|L}] 4.584;3.7358 +;- + 191 + NaN NaN 120521.2 NaN 3902 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5957 35.568 NaN 71400 35 0 22213 0.262 -1 LPECPVMHDSK 11 24 438.20533073306103 1311.5941627993832 3 438.2053527832031 MULTI HCD FTMS 0 0 0 5951 6674.4375 0.15011277856622132 -5 0.14923095703125 6 Carbamidomethyl (C) _LPEC(Carbamidomethyl (C))PVMHDSK_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 2.2527281973983926 0.4090409658946738 1 {I|L}P 2 -1 19.464 0 0 1.484 0 0 0 1098.435060834661 1098.435060834661 5.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 1.484 + + 3 + NaN NaN 103734.7 NaN 3903 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5958 35.571 NaN 14153 35 0 3087.5 0.261 + -1 MRQSDWTYE 9 16 616.2572021484375 NaN 0 616.2572021484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _M(Oxidation (M))RQSDWTYE_ REV__ENSG00000170289|ENST00000320005|CNGB3;REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82609.8 NaN 3904 2052 5951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5960 35.576 NaN 141980 35 0 20139 0.327 + 157 AEIVEGENHTY 11 32 631.2886161363017 1260.5626793394033 2 631.2885131835938 MULTI HCD FTMS 0 0 0 5959 108647.625 0.8608168728549053 2 -0.055999755859375 1 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 43.476825903602695 0.1145582081028919 1 {[CP]|[EA]}{I|L}VEGE[HN]TY 11 0 + 60.265 0 0 4.7808 4.7808 84.569 0 0 0 0.8477228263835102 60.26525764102988 0.8477228263835102 8.010299956639813 0 2.6549471895720984 0 0.3494850021680094 0 + + {[CP]|[EA]}{I|L}VEGE[HN]TY;{[CP]|[EA]}{I|L}EVGE[HN]TY 4.7808;4.1454 +;- + 125 NaN NaN 98298.9 NaN 3905 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5961 35.581 NaN 429540 35 0 46841 0.264 -1 VFAHPRKLLM 10 71 409.9057375497935 1226.6953832495806 3 409.90576171875 MULTI HCD FTMS 0 0 0 5959 105537.8515625 0.7768564286829105 -1 0.026378631591796875 2 Oxidation (M) _VFAHPRKLLM(Oxidation (M))_ chrX:152714682-152716896|136|16.68|0.02|9.44|+|ENST00000370293|MAGEA2B,MAGEA2B;chrX:152751428-152751509|195|53.73|0.18|8.22|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152751725|157|30.32|0.07|8.79|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152752394|154|37.16|0.12|8.3|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152753788|128|12.04|0.02|9.34|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751822-152752394|141|22.9|0.06|8.69|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152752513-152753313|144|25.64|0.07|8.6|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152752513-152753788|147|21.88|0.06|8.57|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152753391-152753542|126|12.66|0.02|9.05|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152753391-152753788|137|16.46|0.03|9.03|-|ENST00000623806|MAGEA2,MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;ENSG00000268606|ENST00000684311|MAGEA2 5.783430956126388 0.4446910851847804 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 30.49 0 0 2.4855 0 0 835.4661429623465 0 835.4661429623465 0 9.06295947543775 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.4855 + + 56 NaN NaN 153020 NaN 3906 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5962 35.584 NaN 257000 35 0 27242 0.261 + 24483 RYLECISCGSS 11 65 406.514271947191 1216.520986441773 3 406.5144958496094 MULTI HCD FTMS 0 0 0 5959 73444.7109375 0.7755112798589961 -2 0.049449920654296875 3 Unmodified _RYLECISCGSS_ ENSG00000011422|ENST00000340093|PLAUR;ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR 7.608950283845883 0.38555039536024605 1 E{[TV]|[{I|L}S]}T{I|L} 5 8 22.307 0 0 1.8337 0 0 655.2304776817908 0 655.2304776817908 0 6.822581265925436 0 0 0 0.7614393726401688 0 0 0 E{[TV]|[{I|L}S]}T{I|L} 1.8337 - 19 + NaN NaN 118261.4 NaN 3907 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5963 35.588 NaN 178690 35 0 34093 0.261 + 5491 FKDGGKEMVAL 11 41 597.8130841336915 1193.611615334183 2 597.8128051757812 MULTI HCD FTMS 0 0 0 5959 49639.89453125 0.10425239367280714 -12 0.33182525634765625 4 Unmodified _FKDGGKEMVAL_ tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1 11.494710602746466 0.35692862141139436 1 KE 2 9 17.831 0 0 1.4939 0 0 504.22507608125267 429.22504602603755 933.4501221072902 0 0 0 0 0 0.5 0 0 0.4247425010840047 + KE 1.4939 + + 52 + NaN NaN 113678.3 NaN 3908 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5964 35.591 NaN 360900 35 0 27117 0.261 -1 HVTQEDFEM 9 67 576.2373454770075 1150.4601380208148 2 576.2368774414062 MULTI HCD FTMS 0 0 0 5959 25756.642578125 0.18221904852022236 46 -1.1880226135253906 5 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 8.155526934196011 0.2891920862272901 1 HD{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 -1 25.674 0 0 2.2316 0 0 457.21190077949376 0 457.21190077949376 0 11.210149894766701 0 0 0 0.4247425010840047 0 0 0 HD{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 2.2316 - 97 NaN NaN 134124.6 NaN 3909 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5965 35.594 NaN 77713 35 0 9021.8 0.262 -1 FPDAREQEIRM 11 32 469.89426890217305 1406.6609773067191 3 470.22900390625 MULTI HCD FTMS 0 0 0 5959 15531.9677734375 0.6078228428101519 7 -0.201751708984375 6 Oxidation (M) _FPDAREQEIRM(Oxidation (M))_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 1.0135738785822086 0.41447547578978133 1 PE 2 -1 19.464 0 0 1.3837 0 0 1162.5384437206196 0 1162.5384437206196 0 12.474250108400469 0 0 0 0 0 0 0 PE 1.3837 - 7 NaN NaN 98407 NaN 3910 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5966 35.598 NaN 35043 35 0 6074.5 0.261 -1 IADPDEMRM 9 16 547.2364754042292 1092.4583978752582 2 547.2374267578125 MULTI HCD FTMS 0 0 0 5959 11288.71484375 0.4413431539536325 -1 0.026378631591796875 7 Oxidation (M) _IADPDEM(Oxidation (M))RM_ ENSG00000145780|ENST00000274457|FEM1C 5.731851221503515 0.3075653528928475 1 [{I|L}A]D 3 -1 15.458 0 0 1.4149 0 0 0 790.2877467295768 790.2877467295768 15.45757490560675 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.4149 + + 1 + NaN NaN 76844.3 NaN 3911 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5967 35.601 NaN 32645 35 0 4312.5 0.261 + 17724 MCKIFGQGKE 10 24 570.7805661523645 1139.5465793715289 2 571.2825317382812 MULTI HCD FTMS 0 0 0 5959 12521.9677734375 0.49077225326269425 4 -0.11550140380859375 8 Unmodified _MCKIFGQGKE_ ENST00000263464.7_1_11:102193294-102193357:+|nuORF 2.9952420565917617 0.4594494122822477 1 H[VP]R 4 10 14.693 0 0 1.2893 0 0 0 647.2838228815061 647.2838228815061 10.713337517843655 0 0 0 0 0 0 0 0 H[VP]R 1.2893 - 6 + NaN NaN 90731.9 NaN 3912 2053 5959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5969 35.606 NaN 858590 35 0 128030 0.327 + 13899 KYQEVTNNL 9 80 554.785147411307 1107.5557418894139 2 554.785400390625 MULTI HCD FTMS 0 0 0 5968 482867.9375 0.23189606894095424 6 -0.17205047607421875 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 114.18643581695662 0.002258955990713129 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNN{I|L} 10 3 + 86.396 0 0 7.8006 7.8006 90.284 0 0 0 12.506309713918768 15.150020216108999 12.506309713918768 9.142469833468695 0 2.057902146726378 1.2218487496163564 1.0356668758921828 0.9876954943324545 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GEVKTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTGGN{I|L};[YK]QEVTNN{I|L};[YQ]KEVTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GEVKTGGN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GEVKTNGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DA]|[EG]}KTNN{I|L};[YK][AG]EVTNN{I|L} 7.8006;6.9751;6.9731;6.9731;6.6714;6.4152;6.1477;6.1477;6.0514;5.84 -;-;-;-;+;-;-;-;-;- + 1983 NaN NaN 205345.5 NaN 3913 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5970 35.61 NaN 261560 35 0 49528 0.261 -1 HSLPQEPVM 9 42 527.2553013462582 1052.4960497593163 2 527.255126953125 MULTI HCD FTMS 0 0 0 5968 99945.2578125 0.7551959968746097 5 -0.14879989624023438 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 38.175570920033316 0.07371992880350783 1 [HS]{I|L}[QP]EPV{M(Oxidation (M))|F} 9 -1 + 44.543 0 0 4.2321 4.2321 89.616 0 0 0 5.13051521653523 26.83992802389298 5.13051521653523 44.54296558509682 0 2.0924778212679485 0 0.3494850021680094 0 [HS]{I|L}[QP]EPV{M(Oxidation (M))|F} 4.2321 + + 92 NaN NaN 117793.9 NaN 3914 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5971 35.614 NaN 214970 35 0 14277 0.261 + 9119 HPGQGGTSYVV 11 45 551.2700903728382 1100.5256278124764 2 551.7550048828125 MULTI HCD FTMS 0 0 0 5968 44988.0546875 0.47508605177123386 7 -0.20204544067382812 3 Unmodified _HPGQGGTSYVV_ REV__ENSG00000183801|ENST00000329293|OLFML1;REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF 10.799506525563784 0.36298595732910816 1 HPNQVEH 7 -1 50.693 0 0 4.6063 0 0 0 256.12900720767817 256.12900720767817 30.03160730965476 0 0 0 0 0.5 0 0.7742275032520141 0 HPNQVEH 4.6063 - 160 + NaN NaN 124382.5 NaN 3915 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5972 35.617 NaN 77593 35 0 7451.6 0.261 + 8908 HPDESGSKFQL 11 32 622.7993778930571 1243.5842028529141 2 622.7993774414062 MULTI HCD FTMS 0 0 0 5968 44343.390625 0.6320549558198246 -1 0.02970123291015625 4 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 12.928695527124582 0.3444342637501213 1 HPDE 4 7 41.186 0 0 3.3118 0 0 0 762.3726900690061 762.3726900690061 28.509562869230862 0 0 0 0 0.5 0 0.4247425010840047 0 + HPDE 3.3118 + + 41 + NaN NaN 95657 NaN 3916 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5973 35.621 NaN 80043 35 0 24534 0.261 + -1 TALDCLSGGTC 11 23 577.7438345118112 1153.4731160904223 2 577.7446899414062 MULTI HCD FTMS 0 0 0 5968 26660.349609375 0.9340113134293431 1 -0.02629852294921875 5 2 Carbamidomethyl (C) _TALDC(Carbamidomethyl (C))LSGGTC(Carbamidomethyl (C))_ REV__ENST00000355360.8_1_1:249211585-249211759:+|nuORF 2.735195868890462 0.4069250265843076 1 D{I|L}[PG] 4 -1 16.198 0 0 1.4043 0 0 753.2791615216812 0 753.2791615216812 0 16.197887582883936 0 0 0 0 0 0 0 D{I|L}[PG] 1.4043 - 4 NaN NaN 92081.6 NaN 3917 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5974 35.624 NaN 39581 35 0 4183.5 0.261 + 438 ALFESMRALC 10 26 570.7805661523645 1139.5465793715289 2 570.7810668945312 MULTI HCD FTMS 0 0 0 5968 15102.044921875 0.2954994411600757 5 -0.14879989624023438 6 Unmodified _ALFESMRALC_ ENST00000474550.5_1_2:101601378-101601966:+|nuORF 2.735195868890462 0.4608258780945842 1 PV 2 10 10.969 0 0 0.96258 0 0 137.03294759362774 803.3688879900868 940.4018355837145 0 0 0 0 0 0 0 0 0 PV 0.96258 - 6 + NaN NaN 87463.1 NaN 3918 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5975 35.627 NaN 32757 35 0 5711.4 0.261 + 28126 TIMYWSGWE 9 19 586.7580759099898 1171.5015988867794 2 586.7596435546875 MULTI HCD FTMS 0 0 0 5968 15253.6552734375 0.6793833933175237 -2 0.056079864501953125 7 Unmodified _TIMYWSGWE_ ENSG00000204624|ENST00000294484|DISP3 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83274.5 NaN 3919 2054 5968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5977 35.632 NaN 225970 35 0 22467 0.327 + 30683 VPENHSVAL 9 47 483.2561512518879 964.4977495705758 2 483.2561950683594 MULTI HCD FTMS 0 0 0 5976 154219.90625 0.07794010782723813 19 -0.4875221252441406 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 40.23920728925047 0.06424668180817725 1 SVA{I|L} 4 5 40.988 0 0 4.2496 0 0 576.2645130841812 0 576.2645130841812 0 18.09508461319119 0 0 0 0.5 0 0.7059771852360797 0 + SVA{I|L} 4.2496 + + 57 NaN NaN 111012.1 NaN 3920 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5978 35.637 NaN 113920 35 0 13810 0.261 + -1 TMLSHNQTI 9 37 530.757084153755 1059.49961537431 2 530.7565307617188 MULTI HCD FTMS 0 0 0 5976 50865.77734375 0.256522797948202 -5 0.1353302001953125 2 Oxidation (M) _TM(Oxidation (M))LSHNQTI_ REV__CCDC18|p.V131I|1|0.27|ENSG00000122483|chr1:93186432-93186432|G/A|missense_variant 13.90604991867851 0.24021115267848145 1 QNT{I|L} 4 -1 38.175 0 0 3.6031 0 0 585.2538319318375 0 585.2538319318375 0 28.883578386120234 0 0 0 0.5 0 0 0.4247425010840047 QNT{I|L} 3.6031 - 25 NaN NaN 99387.2 NaN 3921 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5979 35.64 NaN 92693 35 0 8001 0.261 + 8537 HAIETEEGL 9 38 499.7429401819077 997.4713274306155 2 499.7435607910156 MULTI HCD FTMS 0 0 0 5976 32586.80078125 0.43246525309952005 4 -0.12250137329101562 3 Unmodified _HAIETEEGL_ ENSG00000077684|ENST00000226319|JADE1;ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-2|JADE1;nc|ENSG00000077684|Q6IE81-3|JADE1 37.97399986684836 0.07464525285885698 1 EG{I|L} 3 6 38.94 0 0 3.9039 0 0 680.3131581037125 0 680.3131581037125 0 26.091896990114233 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + EG{I|L} 3.9039 + + 69 NaN NaN 89319 NaN 3922 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5980 35.644 NaN 151400 35 0 13745 0.261 -1 ADKMDMSL 8 38 492.7041609753599 983.3937690175198 2 492.7042541503906 MULTI HCD FTMS 0 0 0 5976 46423.72265625 0.16090507097792053 -6 0.16851043701171875 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 13.042465956692817 0.497831663890332 1 {M(Oxidation (M))|F}S{I|L} 3 -1 35.005 0 0 3.5596 0 0 618.2339955060562 0 618.2339955060562 0 15.82387206599456 0 0 0 0.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}S{I|L} 3.5596 + + 18 NaN NaN 100929.9 NaN 3923 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5981 35.647 NaN 79535 35 0 11679 0.261 + 33139 YEGGCYLF 8 27 476.1984905395241 NaN 0 476.19891357421875 PEAK HCD FTMS 0 0 0 5976 14982.0751953125 0.4948247653430674 -21 0.5838737487792969 5 Unmodified _YEGGCYLF_ ENST00000526562.5_1_11:8704757-8706293:+|nuORF 2.8892196856762586 0.38822285293237185 1 V 1 8 5.4846 0 0 0.57709 0 0 165.01458989346855 683.2789400690061 848.2935299624746 0 0 0 0 0 0 0 0 0 V 0.57709 - 8 + NaN NaN 90292 NaN 3924 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5982 35.65 NaN 411360 35 0 125300 0.261 + 29791 VEHQFGAQ 8 45 458.21944121062313 914.4243294880463 2 458.2194519042969 MULTI HCD FTMS 0 0 0 5976 18779.091796875 0.6436216365800109 2 -0.05950164794921875 6 Unmodified _VEHQFGAQ_ ENSG00000076513|ENST00000261739|ANKRD13A 20.453626601364224 0.4433031943603284 1 V{M(Oxidation (M))|F}H 3 6 26.198 0 0 2.865 0 0 0 528.2217928737169 528.2217928737169 -6.382104921644455 0 -6.382104921644455 0 0 0 0 0 0 V{M(Oxidation (M))|F}H 2.865 - 48 + NaN NaN 138842.3 NaN 3925 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5983 35.654 NaN 49360 35 0 7332.2 0.261 + 14150 LAEQVLQR 8 29 478.7801876849465 955.545822436693 2 478.781005859375 MULTI HCD FTMS 0 0 0 5976 14124.78125 0.33963457909268824 4 -0.12250137329101562 7 Unmodified _LAEQVLQR_ REV__ENSG00000095383|ENST00000465784|TBC1D2;REV__nc|ENSG00000095383|Q9BYX2-2|TBC1D2;REV__nc|ENSG00000095383|Q9BYX2-3|TBC1D2;REV__nc|ENSG00000095383|Q9BYX2-4|TBC1D2;REV__nc|ENSG00000095383|Q9BYX2-5|TBC1D2;REV__nc|ENSG00000095383|Q9BYX2-6|TBC1D2 4.3292370932331545 0.5355693454741696 1 V 1 -1 6.9897 0 0 0.73149 0 0 369.18035720407426 484.2765048432419 853.4568620473162 0 0 0 0 0 0 0 0 0 V 0.73149 + + 6 + NaN NaN 89018.3 NaN 3926 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5984 35.657 NaN 67764 35 0 13349 0.261 + 4194 ETWPGGPAR 9 31 485.7407990782051 969.4670452232102 2 486.24224853515625 MULTI HCD FTMS 0 0 0 5976 4254.89404296875 0.3112077493024986 -2 0.055999755859375 8 Unmodified _ETWPGGPAR_ ENST00000367242.3_1_1:202976531-202976618:+|nuORF 3.944395688203298 0.32111559684428237 1 R 1 8 14.604 0 0 1.5064 0 0 795.3553946878571 0 795.3553946878571 0 9.119543704721593 0 0 0 0 0 0 0 + R 1.5064 + + 3 + NaN NaN 90668.5 NaN 3927 2055 5976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5986 35.662 NaN 199240 35 0 21636 0.327 + 25582 SFSYGYIRQ 9 54 560.7764199309543 NaN 0 560.7658081054688 PEAK HCD FTMS 0 0 0 5985 6361.84814453125 0.4112656945579741 -6 0.16501617431640625 1 Unmodified _SFSYGYIRQ_ REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 11.640296217721598 0.23883959125015683 1 SVHW 4 -1 23.047 0 0 2.0587 0 0 147.09163583421258 460.1990145318969 607.2906503661095 0 0 0 0 0 0 0 0.5 0 SVHW 2.0587 - 106 + NaN NaN 107503.9 NaN 3928 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5987 35.667 NaN 267490 35 0 34758 0.263 + 8910 HPDESGSKFQL 11 47 415.5348502867763 1243.582721460529 3 415.8692626953125 MULTI HCD FTMS 0 0 0 5985 42722.32421875 0.47527949450067325 1 -0.029815673828125 2 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 5.868138319507137 0.39318500527288264 1 {I|L} 1 10 21.99 0 0 1.7683 0 0 1112.4882370628711 0 1112.4882370628711 0 16.505149978319906 0 0 0 0.5 0 0 0 + {I|L} 1.7683 + + 5 + NaN NaN 129873.2 NaN 3929 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5988 35.67 NaN 106810 35 0 14294 0.261 + 21682 QAADHQPIL 9 31 496.76162823846886 991.5087035437377 2 496.7615661621094 MULTI HCD FTMS 0 0 0 5985 46596.09765625 0.39897924924103106 4 -0.11606597900390625 3 Unmodified _QAADHQPIL_ ENSG00000284024|ENST00000640019|MSANTD7 25.399314129420986 0.14091189997036632 1 C(Carbamidomethyl (C))[DN]P{I|L}{I|L} 6 5 20.864 0 0 2.1042 0 0 261.1662770001969 0 261.1662770001969 0 12.280156171532184 0 0 0 0.8182503180159344 0 0.5 0.7302046884880937 C(Carbamidomethyl (C))[DN]P{I|L}{I|L} 2.1042 - 13 NaN NaN 92806 NaN 3930 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5989 35.673 NaN 73756 35 0 8855.5 0.261 + 4395 EYATKISRF 9 28 557.7980791840674 1113.5816054349348 2 557.7978515625 MULTI HCD FTMS 0 0 0 5985 29413.111328125 0.7911765827694661 1 -0.029815673828125 4 Unmodified _EYATKISRF_ ENSG00000057757|ENST00000246151|PITHD1;nc|ENSG00000057757|Q9GZP4-2|PITHD1 13.614867670302875 0.2427269026982664 1 EYATK{I|L} 6 3 61.146 0 0 5.491 0 0 0 405.18854700260005 405.18854700260005 61.146387799684874 0 0 0 0 0 1.6989700043360187 0 0 + EYATK{I|L} 5.491 + + 29 + NaN NaN 90438 NaN 3931 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5990 35.677 NaN 82138 35 0 6843.2 0.261 + 4708 EYQKVGQSF 9 46 543.2668222455577 1084.5190915579153 2 543.7686157226562 MULTI HCD FTMS 0 0 0 5985 16049.8857421875 0.45770735751323044 3 -0.09281539916992188 5 Unmodified _EYQKVGQSF_ ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0-3|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 10.073929032068715 0.27331982688540024 1 {I|L}Q[HC] 4 8 11.682 0 0 1.0772 0 0 585.2924671857437 0 585.2924671857437 0 5.740312677277187 0 0 0 0 0 0 0 {I|L}Q[HC] 1.0772 - 18 NaN NaN 93952.4 NaN 3932 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5991 35.68 NaN 77335 35 0 11375 0.261 + 20503 PDGANVHLI 9 38 468.25121983768986 934.4878867421797 2 469.2403564453125 MULTI HCD FTMS 0 0 0 5985 3254.903564453125 0.3301475650162695 4 -0.11606597900390625 6 Unmodified _PDGANVHLI_ ENSG00000185504|ENST00000327787|FAAP100;nc|ENSG00000185504|Q0VG06-2|FAAP100;nc|ENSG00000185504|Q0VG06-3|FAAP100 7.910154910731844 0.2910521888787154 1 PGPA 4 7 18.928 0 0 2.0255 0 0 113.0488505913432 496.2544080931511 609.3032586844943 0 0 0 0 0 0 0 0 0 PGPA 2.0255 - 23 + NaN NaN 85364.1 NaN 3933 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5992 35.683 NaN 17708 35 0 5312.4 0.261 + 28627 TRCEDEEQDE 10 13 627.2331071416546 1252.4516613501091 2 627.2334594726562 MULTI HCD FTMS 0 0 0 5985 9427.072265625 0.09983765468166617 43 -1.1023368835449219 7 Unmodified _TRCEDEEQDE_ REV__ENSG00000149292|ENST00000529221|TTC12;REV__ENST00000489064.5_1_11:113186979-113194793:+|nuORF;REV__ENST00000527781.1_1_11:113186979-113196409:+|nuORF;REV__nc|ENSG00000149292|Q9H892-2|TTC12;REV__TTC12-LUC7L2|1|fusion 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77708.7 NaN 3934 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5993 35.687 NaN 50641 35 0 8245.2 0.263 -1 NATFIGDHM 9 33 511.2241190915838 NaN 0 511.224609375 PEAK HCD FTMS 0 0 0 5985 10112.5986328125 0.6524446684092828 -1 0.02968597412109375 8 Oxidation (M) _NATFIGDHM(Oxidation (M))_ ENSG00000091157|ENST00000254442|WDR7;nc|ENSG00000091157|Q9Y4E6-2|WDR7;WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant 6.2057823575117 0.2651744870083793 1 T 1 -1 6.9897 0 0 0.68497 0 0 185.08011475782126 731.2839449518186 916.3640597096398 0 0 0 0 0 0 0 0 0 T 0.68497 + + 1 + NaN NaN 91046.4 NaN 3935 2056 5985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5995 35.692 NaN 4366200 35 0 370280 0.327 + 29772 VEEETVEVLT 10 101 574.2907481779872 1146.5669434227743 2 574.2913208007812 MULTI HCD FTMS 0 0 0 5994 2705429.5 0.6123800417982056 3 -0.08625030517578125 1 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 61.357469665136826 0.03648492562855298 1 {[TV]|[{I|L}S]}[DP]HHEVT{I|L} 10 -1 + 84.536 0 0 7.3729 7.3729 86.237 0 0 0 4.229955086773373 4.229955086773373 4.229955086773373 1.3830269816628231 0 1.7302046884880937 1.3010299956639813 2.56295299324845 0 {[TV]|[{I|L}S]}[DP]HHEVT{I|L};{[TV]|[{I|L}S]}[HD]PHEVT{I|L};HP{I|L}SDHEVT{I|L};{I|L}HPSDHEVT{I|L};H{I|L}PSDHEVT{I|L};{[YC]|[HE]}VSPHEVT{I|L};{[TV]|[{I|L}S]}[DP]HEHVT{I|L};{[TV]|[{I|L}S]}[HD]PEHVT{I|L};{[YC]|[HE]}VSPEHVT{I|L};{[TV]|[{I|L}S]}[DP]HHTVE{I|L} 7.3729;7.2523;7.004;6.8339;6.8316;6.5493;6.1453;6.0247;5.3217;5.1964 -;-;-;-;-;-;-;-;-;- 9194 NaN NaN 732679.5 NaN 3936 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5996 35.696 NaN 294370 35 0 34412 0.261 + 18296 MPEKEPSVL 9 67 523.2653443583924 1044.5161357835848 2 523.2655639648438 MULTI HCD FTMS 0 0 0 5994 135108.71875 1 0 0 2 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 55.50274090549119 0.023872834264864425 1 V{I|L} 2 7 23.583 0 0 2.2578 0 0 814.3505949571885 0 814.3505949571885 0 1.7871147780198982 0 0 0 0.5 0 0 0 + V{I|L} 2.2578 + + 149 NaN NaN 126061.2 NaN 3937 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5997 35.7 NaN 334440 35 0 71856 0.261 + 28482 TPPPDDPRL 9 45 504.2616039523 1006.5086549714 2 504.2616271972656 MULTI HCD FTMS 0 0 0 5994 94676.1640625 0.8998069712650254 3 -0.08625030517578125 3 Unmodified _TPPPDDPRL_ ENSG00000110025|ENST00000377244|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;nc|ENSG00000110025|Q9NRS6-2|SNX15 18.1463463914782 0.20357593197100715 1 [TP]P 3 6 32.447 0 0 3.2237 0 0 0 708.3335665338499 708.3335665338499 32.447274948966935 0 0 0 0 0.5 1.6989700043360187 0 0 + [TP]P 3.2237 + + 4 + NaN NaN 129917.2 NaN 3938 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5998 35.703 NaN 206220 35 0 20934 0.261 + 2600 DTVAQITQR 9 64 516.2776890459132 1030.5408251586264 2 516.277099609375 MULTI HCD FTMS 0 0 0 5994 48827.50390625 0.10024229271314268 8 -0.192352294921875 4 Unmodified _DTVAQITQR_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 35.61225514009592 0.08548698421724198 1 T[Q{I|L}]ACPP 7 7 44.187 0 0 4.2878 0 0 302.1694508283219 0 302.1694508283219 0 26.535532020140664 0 0 0 1.4489700043360187 0 0 0.4247425010840047 T[Q{I|L}]ACPP 4.2878 - 117 NaN NaN 115741.1 NaN 3939 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 5999 35.707 NaN 57983 35 0 10202 0.261 + 9061 HPETSMIR 8 27 485.7407990782051 969.4670452232102 2 485.740478515625 MULTI HCD FTMS 0 0 0 5994 13174.9248046875 0.5317453535670363 1 -0.029827117919921875 5 Unmodified _HPETSMIR_ ENSG00000174611|ENST00000423778|KY;nc|ENSG00000174611|Q8NBH2-3|KY 2.577480529830294 0.5381683276125971 1 W[DP] 3 7 10.458 0 0 1.0787 0 0 553.2967565654109 0 553.2967565654109 0 10.45757490560675 0 0 0 0 0 0 0 W[DP] 1.0787 - 4 NaN NaN 87194.1 NaN 3940 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6000 35.71 NaN 74648 35 0 5589.1 0.261 + 752 ASDCPGESTL 10 35 490.2056022263599 978.3966515195198 2 490.2054138183594 MULTI HCD FTMS 0 0 0 5994 35721.421875 0.6025302797576565 -3 0.0858001708984375 6 Unmodified _ASDCPGESTL_ nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B 18.1463463914782 0.3413772152514074 1 {M(Oxidation (M))|F}T{I|L} 3 8 34.253 0 0 3.5009 0 0 599.2172108380875 0 599.2172108380875 0 23.79493455131808 0 0 0 0.4247425010840047 0 0.3807196863200844 0 {M(Oxidation (M))|F}T{I|L} 3.5009 - 7 NaN NaN 91498.1 NaN 3941 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6001 35.713 NaN 33087 35 0 5602.9 0.261 + 9666 HVFGVARIG 9 16 478.27660398674874 NaN 0 478.27685546875 PEAK HCD FTMS 0 0 0 5994 9010.421875 0.4858895850259589 1 -0.029827117919921875 7 Unmodified _HVFGVARIG_ REV__ENSG00000180801|ENST00000315366|ARSJ 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87720.9 NaN 3942 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6002 35.717 NaN 59989 35 0 10036 0.261 + 26553 SVNDNLKPERG 11 26 614.8181306445767 1227.6217083559534 2 615.3193359375 MULTI HCD FTMS 0 0 0 5994 12219.078125 0.4525829050513653 -4 0.11550140380859375 8 Unmodified _SVNDNLKPERG_ REV__ENSG00000119487|ENST00000265960|MAPKAP1;REV__ENST00000437973.2_1_9:128321910-128347898:-|nuORF;REV__nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1 9.5439744041441 0.373925449867384 1 [DV]SN 4 -1 40.406 0 0 3.2914 0 0 0 809.4278593496371 809.4278593496371 24.948500216800937 0 0 0 0 0.6989700043360187 1.5228787452803376 0 0.5 [DV]SN 3.2914 - 15 + NaN NaN 92282 NaN 3943 2057 5994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6004 35.722 NaN 368210 35 0 43475 0.326 -1 RYVRKFVLM 9 55 409.9057375497935 1226.6953832495806 3 409.90594482421875 MULTI HCD FTMS 0 0 0 6003 111848.703125 0.8233101467964383 4 -0.10614395141601562 1 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 1 {I|L}{M(Oxidation (M))|F} 2 -1 28.271 0 0 2.3047 0 0 948.5640157750472 0 948.5640157750472 0 13.57840941039747 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3047 + + 42 NaN NaN 133627.5 NaN 3944 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6005 35.726 NaN 493750 35 0 39599 0.261 + 28488 TPQDHEVAL 9 75 505.25155305141357 1008.4885531696272 2 505.251953125 MULTI HCD FTMS 0 0 0 6003 189504.21875 0.8413092806181932 -2 0.059642791748046875 2 Unmodified _TPQDHEVAL_ ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;nc|ENSG00000129204|P35125-2|USP6 55.50274090549119 0.023872834264864425 1 EVA{I|L} 4 5 46.3 0 0 4.591 0 0 578.2457752912125 0 578.2457752912125 0 34.10850666067283 0 0 0 0.5 0 1.1747425010840047 0 + EVA{I|L} 4.591 + + 193 NaN NaN 154234.9 NaN 3945 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6006 35.73 NaN 112200 35 0 13519 0.261 + 9447 HPVRVEDEP 9 49 539.2699037222434 1076.5252545112867 2 539.2823486328125 MULTI HCD FTMS 0 0 0 6003 10391.5107421875 0.09601342737997359 11 -0.26546478271484375 3 Unmodified _HPVRVEDEP_ ENSG00000237515|ENST00000558583|SHISA9;nc|ENSG00000237515|B4DS77-2|SHISA9 6.723162845929126 0.3000504726104499 1 TPE 3 7 30.445 0 0 2.8281 0 0 731.38383681465 0 731.38383681465 0 1.8516498450721741 0 0 0 0 0 0.4247425010840047 0 TPE 2.8281 - 60 NaN NaN 97085.3 NaN 3946 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6007 35.733 NaN 64351 35 0 7673 0.261 + 28339 TPAPPTHAL 9 39 452.7479414660215 903.481329998843 2 452.7477722167969 MULTI HCD FTMS 0 0 0 6003 26020.158203125 0.5215540872459649 1 -0.033172607421875 4 Unmodified _TPAPPTHAL_ ENSG00000165684|ENST00000684778|SNAPC4 19.256988751693697 0.19398022840297344 1 TPAP 4 5 41.186 0 0 4.5585 0 0 0 534.2687471979124 534.2687471979124 35.70107520596089 0 0 0 0 0.9247425010840047 0 0 0 + TPAP 4.5585 + + 16 + NaN NaN 94181.4 NaN 3947 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6008 35.736 NaN 114570 35 0 37016 0.261 -1 IMIFDHFTWS 10 33 438.20533073306103 1311.5941627993832 3 438.2054138183594 MULTI HCD FTMS 0 0 0 6003 29569.828125 0.6650461647995578 1 -0.033172607421875 5 Oxidation (M) _IM(Oxidation (M))IFDHFTWS_ ENSG00000170099|ENST00000341584|SERPINA6;ENST00000555056.1_1_14:94770757-94780257:-|nuORF 3.5870582119611467 0.4563168352879256 1 {I|L}P 2 -1 19.464 0 0 1.484 0 0 0 1098.4336956011527 1098.4336956011527 12.474250108400469 0 0 0 0 0 0 0 0 {I|L}P 1.484 - 3 + NaN NaN 95483.7 NaN 3948 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6009 35.74 NaN 215850 35 0 21513 0.261 + 9118 HPGPETEIH 9 51 508.743320921646 1015.472088910092 2 508.7428894042969 MULTI HCD FTMS 0 0 0 6003 46608.82421875 0.6002436921600869 4 -0.10614395141601562 6 Unmodified _HPGPETEIH_ REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF 15.847184025352803 0.2234401846867398 1 TVEQQH{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 -1 + 31.872 0 0 3.1386 3.1386 86.667 0 0 0 11.170912423450403 1.4266750356873104 1.4266750356873104 17.043650362227247 0 0 0 0.4247425010840047 0 TVEQQH{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};TV{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3.1386;1.4602 -;- 68 + NaN NaN 122541.5 NaN 3949 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6010 35.743 NaN 24574 35 0 4716.1 0.261 + 158 AEIVEGENHTY 11 13 631.2886161363017 1260.5626793394033 2 631.2885131835938 MULTI HCD FTMS 0 0 0 6003 18785.36328125 0.1488367341228949 7 -0.16252517700195312 7 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 5.783430956126388 0.39355650299313505 1 {[CP]|[EA]}{I|L}VE 5 6 27.218 0 0 2.1592 0 0 0 716.2643526666624 716.2643526666624 27.21848749616356 0 0 0 0 0.5 0 0 0 + {[CP]|[EA]}{I|L}VE 2.1592 + + 6 + NaN NaN 86123.8 NaN 3950 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6011 35.746 NaN 41810 35 0 4820.7 0.261 + 439 ALFESMRALC 10 26 570.7813495562173 NaN 0 570.7948608398438 PEAK HCD FTMS 0 0 0 6003 5273.99853515625 1 0 0 8 Unmodified _ALFESMRALC_ ENST00000474550.5_1_2:101601378-101601966:+|nuORF 2.735195868890462 0.33784334045437464 1 CV 2 10 10.969 0 0 0.96258 0 0 131.06870233353794 803.3660982721311 934.4348006056691 0 0 0 0 0 0 0 0 0 CV 0.96258 - 6 + NaN NaN 87459.6 NaN 3951 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6012 35.75 NaN 50143 35 0 8490.5 0.261 + 32129 VYSHVIQKL 9 38 543.8189129052427 1085.6232728772852 2 543.8194580078125 MULTI HCD FTMS 0 0 0 6003 10324.8779296875 0.16059770552550862 6 -0.14258956909179688 9 Unmodified _VYSHVIQKL_ ENSG00000135094|ENST00000257549|SDS 9.38312468134398 0.279288223203164 1 P 1 9 2.4743 0 0 0.22791 0 0 838.64414492494 146.90947900943596 985.5536239343759 0 0 0 0 0 0 0 0 0 P 0.22791 - 3 + NaN NaN 90123.6 NaN 3952 2058 6003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6014 35.755 NaN 336740 35 0 52471 0.326 + 13900 KYQEVTNNL 9 55 554.785147411307 1107.5557418894139 2 554.7854614257812 MULTI HCD FTMS 0 0 0 6013 191779.125 0.09210142512814051 11 -0.2588386535644531 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 76.82478488871298 0.006879825292024087 1 [YK]Q{NN|[MP]|[D{I|L}]|[EV]}TNN{I|L} 9 0 + 62.898 0 0 5.679 5.679 83.368 0 0 0 1.7609125905568135 16.249387366083 1.7609125905568135 1.7609125905568135 0 1.9247425010840047 0 0.3807196863200844 0.6989700043360187 + + [YK]Q{NN|[MP]|[D{I|L}]|[EV]}TNN{I|L};[YQ]K{NN|[MP]|[D{I|L}]|[EV]}TNN{I|L};[YK][AG]{NN|[MP]|[D{I|L}]|[EV]}TNN{I|L};[YK]Q{NN|[MP]|[D{I|L}]|[EV]}TGGN{I|L};[YK]Q{NN|[MP]|[D{I|L}]|[EV]}TNGG{I|L};[YQ]K{NN|[MP]|[D{I|L}]|[EV]}TNGG{I|L};[YQ]K{NN|[MP]|[D{I|L}]|[EV]}TGGN{I|L};[YQ]{NN|[MP]|[D{I|L}]|[EV]}KTNN{I|L};[YK]{[MG]|[TS]}[PA]TNN{I|L};[YQ]{NN|[MP]|[D{I|L}]|[EV]}KTNGG{I|L} 5.679;5.52;4.8476;4.8476;4.8476;4.6886;4.6886;4.4581;3.7857;3.6267 +;-;-;-;-;-;-;-;-;- + 295 NaN NaN 129753.8 NaN 3953 2059 6013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6015 35.759 NaN 596380 35 0 150400 0.261 + 24496 RYLEKPMEI 9 74 597.8130841336915 1193.611615334183 2 597.8130493164062 MULTI HCD FTMS 0 0 0 6013 254871.046875 0.5352734320957448 -6 0.17850112915039062 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 49.52724829834842 0.03223213920720493 1 {I|L}{M(Oxidation (M))|F}DEKE{I|L} 7 5 53.933 0 0 4.5184 0 0 0 316.1412447565063 316.1412447565063 30.62205977262472 0 0 0 0 1 0 0.9247425010840047 0.3494850021680094 {I|L}{M(Oxidation (M))|F}DEKE{I|L} 4.5184 - 743 + NaN NaN 167910.2 NaN 3954 2059 6013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6016 35.763 NaN 195740 35 0 34263 0.261 + -1 SLHCSLSSY 9 40 527.2371731559257 NaN 0 527.25537109375 PEAK HCD FTMS 0 0 0 6013 3201.9169921875 0.7996382710541666 1 -0.023250579833984375 3 Carbamidomethyl (C) _SLHC(Carbamidomethyl (C))SLSSY_ REV__ENST00000534383.5_1_11:117694988-117695420:-|nuORF 7.910154910731844 0.25691533546754686 1 HE 2 -1 9.464 0 0 0.89922 0 0 224.05312941556377 559.2618502252561 783.31497964082 0 0 0 0 0 0 0 0 0 HE 0.89922 - 75 + NaN NaN 110207.5 NaN 3955 2059 6013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6017 35.766 NaN 119550 35 0 7664.6 0.263 + 32458 WDYTYVHSF 9 59 406.514271947191 1216.520986441773 3 406.5146179199219 MULTI HCD FTMS 0 0 0 6013 19871.826171875 0.20982893323387966 4 -0.09284210205078125 4 Unmodified _WDYTYVHSF_ ENSG00000187616|ENST00000339996|MYMK 2.0597508629832335 0.3354026079994024 1 {I|L} 1 9 16.99 0 0 1.3966 0 0 1085.4265173029041 0 1085.4265173029041 0 0 0 0 0 0 0 0 0 {I|L} 1.3966 - 7 + NaN NaN 95994.2 NaN 3956 2059 6013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6018 35.77 NaN 84824 35 0 7753.8 0.261 + 8173 GPSENDPNL 9 36 471.711806321622 941.4090597100441 2 471.7116394042969 MULTI HCD FTMS 0 0 0 6013 24925.1640625 0.5444952648816178 -2 0.06299972534179688 5 Unmodified _GPSENDPNL_ ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 29.84058131909904 0.11198220037953927 1 ND[NP]{I|L} 5 4 31.119 0 0 3.3056 0 0 370.14781386543126 0 370.14781386543126 0 27.139764356889184 0 0 0 1.2134679910804405 0 0.3494850021680094 0.3807196863200844 + ND[NP]{I|L} 3.3056 + + 13 NaN NaN 105236 NaN 3957 2059 6013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6019 35.773 NaN 64240 35 0 8020.9 0.261 + 31005 VSIDNITGR 9 33 487.7668670666486 NaN 0 487.7665710449219 PEAK HCD FTMS 0 0 0 6013 19221.966796875 0.9636738145784736 -1 0.033172607421875 6 Unmodified _VSIDNITGR_ REV__ENSG00000266967|ENST00000427569|AARSD1;REV__ENST00000416949.5_1_17:41109156-41116489:-|nuORF;REV__ENST00000441280.7_1_17:41108193-41116457:-|nuORF;REV__nc|ENSG00000266967|Q9BTE6-2|AARSD1;REV__nc|ENSG00000266967|Q9BTE6-3|AARSD1 3.5964929083625545 0.27781873954207675 1 {I|L} 1 -1 3.0989 0 0 0.31832 0 0 463.275420069041 394.1368807428344 857.4123008118754 0 0 0 0 0 0 0 0 0 {I|L} 0.31832 + + 1 + NaN NaN 91110.9 NaN 3958 2059 6013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6021 35.778 NaN 433640 35 0 42537 0.327 + 79 ADKMDMSL 8 47 492.7041609753599 983.3937690175198 2 492.7043762207031 MULTI HCD FTMS 0 0 0 6020 283183.09375 0.9815153372551955 -1 0.023250579833984375 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 76.82478488871298 0.02181697117040772 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 56.305 0 0 5.7256 0 0 228.07426650215 0 228.07426650215 0 15.414478256039672 0 0 0 1.6747425010840047 0 0.3807196863200844 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.7256 + + 97 NaN NaN 147522.3 NaN 3959 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6022 35.783 NaN 415500 35 0 46423 0.261 + 27607 TAHFEQNTL 9 63 530.757084153755 1059.49961537431 2 530.756591796875 MULTI HCD FTMS 0 0 0 6020 198289.5 1 0 0 2 Unmodified _TAHFEQNTL_ ENSG00000153975|ENST00000368576|ZUP1 61.60191391372663 0.015340508911304802 1 QNT{I|L} 4 5 46.547 0 0 4.3933 0 0 585.2538929669937 0 585.2538929669937 0 29.266974107833814 0 0 0 1.0484550065040281 0 0.28872548999643577 0.4247425010840047 + QNT{I|L} 4.3933 + + 289 NaN NaN 149261.9 NaN 3960 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6023 35.786 NaN 120350 35 0 12726 0.261 + 30193 VHPGGDTVAI 10 40 483.2561512518879 964.4977495705758 2 483.25604248046875 MULTI HCD FTMS 0 0 0 6020 59845.8203125 0.030245055917778242 24 -0.5875701904296875 3 Unmodified _VHPGGDTVAI_ ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 13.90604991867851 0.3810395177745597 1 VA{I|L} 3 7 28.188 0 0 2.9225 0 0 663.2966175763687 0 663.2966175763687 0 11.989700043360187 0 0 0 0.5 0 0 0 + VA{I|L} 2.9225 + + 15 NaN NaN 98453.1 NaN 3961 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6024 35.79 NaN 264780 35 0 28644 0.261 + 27741 TATKIEITM 9 52 512.2732761611027 1022.5319993890054 2 512.273193359375 MULTI HCD FTMS 0 0 0 6020 114014.59375 0.3141574300733999 -6 0.17205047607421875 4 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 83.42873516780209 0.004742894019233849 1 TKQN{I|L}T{M(Oxidation (M))|F} 7 4 71.107 0 0 6.954 0 0 172.08448989082189 0 172.08448989082189 0 56.20969759890315 0 0 0 3.1237125054200234 0 1.5669015600442577 0 TKQN{I|L}T{M(Oxidation (M))|F} 6.954 - 100 NaN NaN 125909.6 NaN 3962 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6025 35.793 NaN 144570 35 0 11458 0.261 + 9353 HPSETDLFR 9 57 551.2700903728382 1100.5256278124764 2 551.7550048828125 MULTI HCD FTMS 0 0 0 6020 14256.201171875 0.1505493486004052 13 -0.31525421142578125 5 Unmodified _HPSETDLFR_ ENST00000359359.6_3_6:36891403-36891601:+|nuORF 9.38312468134398 0.279288223203164 1 HPNQVE 6 7 35.411 0 0 3.2177 0 0 0 393.1887301080688 393.1887301080688 19.926609503452184 0 0 0 0 0.5 0 0.5 0.3807196863200844 HPNQVE 3.2177 - 139 + NaN NaN 101897.2 NaN 3963 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6026 35.796 NaN 28696 35 0 4620.2 0.261 + 9301 HPPYMLRCDL 10 24 622.7993778930571 1243.5842028529141 2 622.7991943359375 MULTI HCD FTMS 0 0 0 6020 27011.10546875 0.38500671313280754 5 -0.10610198974609375 6 Unmodified _HPPYMLRCDL_ REV__ENSG00000157933|ENST00000378536|SKI 3.072263186857199 0.4590417271953214 1 HP 2 -1 23.856 0 0 1.9184 0 0 0 1006.4484957330686 1006.4484957330686 16.866654986684733 0 0 0 0 0.28872548999643577 0 0 0 HP 1.9184 + + 5 + NaN NaN 85877.5 NaN 3964 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6027 35.799 NaN 79439 35 0 10829 0.264 + 8747 HHPDPNTM 8 40 474.7025791032736 947.3906052733472 2 475.218505859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HHPDPNTM_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 5.230669730166228 0.5342319408533849 1 QVNM 4 6 25.037 0 0 2.6427 0 0 457.18367201972814 0 457.18367201972814 0 1.8495564253589691 0 0 0 0 0 0 0 QVNM 2.6427 - 32 NaN NaN 99189.7 NaN 3965 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6028 35.803 NaN 84024 35 0 12125 0.261 -1 LPPRLKEM 8 44 500.28519437228107 NaN 0 500.27166748046875 PEAK HCD FTMS 0 0 0 6020 1999.5086669921875 1 0 0 8 Oxidation (M) _LPPRLKEM(Oxidation (M))_ ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-12|NRG1;nc|ENSG00000157168|Q02297-2|NRG1;nc|ENSG00000157168|Q02297-3|NRG1;nc|ENSG00000157168|Q02297-4|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;nc|ENSG00000157168|Q02297-8|NRG1;nc|ENSG00000157168|Q02297-9|NRG1 5.760428011301431 0.38822285293237185 1 PV 2 -1 10.969 0 0 1.0985 0 0 113.11177697438582 686.2990206354124 799.4107976097982 0 0 0 0 0 0 0 0 0 PV 1.0985 - 13 + NaN NaN 101321.7 NaN 3966 2060 6020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6030 35.808 NaN 206810 35 0 24074 0.327 -1 FSLTMMVIF 9 48 560.7764199309543 NaN 0 560.7656860351562 PEAK HCD FTMS 0 0 0 6029 5952.3076171875 0.38479068830174157 -1 0.029994964599609375 1 2 Oxidation (M) _FSLTM(Oxidation (M))M(Oxidation (M))VIF_ ENSG00000107951|ENST00000263063|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF;nc|ENSG00000107951|Q9NVV4-2|MTPAP 15.847184025352803 0.21527282152051216 1 SVH{M(Oxidation (M))|F}VT 6 -1 31.631 0 0 2.8254 0 0 147.09095886707547 299.11542688541255 446.206385752488 0 0 0 0 0 0 0 0.5 0 SVH{M(Oxidation (M))|F}VT 2.8254 - 212 + NaN NaN 130737.3 NaN 3967 2061 6029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6031 35.813 NaN 63683 35 0 7573.9 0.261 + 34723 YPVKEQESI 9 31 546.7823505471317 1091.5501481610634 2 546.7826538085938 MULTI HCD FTMS 0 0 0 6029 37406.2578125 0.6290066321562626 -3 0.08641815185546875 2 Unmodified _YPVKEQESI_ ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5 21.536976647645854 0.1742816388551942 1 YPV 3 6 48.416 0 0 4.4356 0 0 0 729.3447970025999 729.3447970025999 42.93182501400722 0 0 0 0 1 1.5228787452803376 0 0 + YPV 4.4356 + + 15 + NaN NaN 88359.2 NaN 3968 2061 6029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6032 35.816 NaN 30571 35 0 6250 0.261 -1 MEFWWMNL 8 19 586.7464947445271 NaN 0 586.7583618164062 PEAK HCD FTMS 0 0 0 6029 2219.466552734375 0.45768104130707915 1 -0.019725799560546875 3 Oxidation (M) _MEFWWM(Oxidation (M))NL_ ENST00000223500.8_1_9:33280807-33280885:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109390.7 NaN 3969 2061 6029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6033 35.819 NaN 15638 35 0 3320.1 0.261 + 32540 WHRTQAHYC 9 15 601.2690708827996 1200.5235888323991 2 601.2473754882812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _WHRTQAHYC_ REV__ENSG00000086758|ENST00000262854|HUWE1;REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;REV__nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99614.1 NaN 3970 2061 6029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6034 35.823 NaN 22866 35 0 6502.2 0.261 + 10036 IFDETKGYVH 10 13 604.8024119161821 1207.5902708991641 2 604.802734375 MULTI HCD FTMS 0 0 0 6029 11777.8525390625 0.7616198689577847 -11 0.3110771179199219 5 Unmodified _IFDETKGYVH_ REV__ENSG00000121270|ENST00000356608|ABCC11;REV__nc|ENSG00000121270|Q96J66-2|ABCC11 3.2813086475875832 0.45793521633868084 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87396.1 NaN 3971 2061 6029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6036 35.828 NaN 1831900 35 0 165920 0.327 + 29773 VEEETVEVLT 10 76 574.2907481779872 1146.5669434227743 2 574.291015625 MULTI HCD FTMS 0 0 0 6035 950968.5 0.2152538551748537 8 -0.1858673095703125 1 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 61.357469665136826 0.03648492562855298 1 [{I|L}T]D[YG]HEVT 9 -1 70.869 0 0 6.181 0 0 0 128.07242912491225 128.07242912491225 30.057809497117844 0 0 0 0 1.6549471895720984 1.3010299956639813 2.473197507588033 0 [{I|L}T]D[YG]HEVT 6.181 - 2223 NaN NaN 373341.2 NaN 3972 2062 6035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6037 35.832 NaN 149910 35 0 20453 0.261 -1 MPLLAISHF 9 46 522.7825573649653 1043.5505617967306 2 523.2653198242188 MULTI HCD FTMS 0 0 0 6035 14023.615234375 0.057134483511769966 25 -0.6175460815429688 2 Oxidation (M) _M(Oxidation (M))PLLAISHF_ ENST00000447325.5_1_3:196662753-196662939:-|nuORF 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3396 0 0 878.4715498111822 0 878.4715498111822 0 9.798187706630157 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3396 + + 49 + NaN NaN 98151 NaN 3973 2062 6035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6038 35.836 NaN 94290 35 0 7171.4 0.263 -1 KYMKEKLLF 9 35 405.89830317500696 1214.6730801252208 3 405.8985290527344 MULTI HCD FTMS 0 0 0 6035 45581.47265625 0.46580742393322244 -9 0.25147247314453125 3 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 4.897010918128616 0.31389406404703984 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5939308105708 0 1049.5939308105708 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 8 + NaN NaN 105263.1 NaN 3974 2062 6035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6039 35.839 NaN 24178 35 0 4310.9 0.261 + -1 IFDLVIDFF 9 21 585.8073470437934 1169.6001411543866 2 585.807861328125 MULTI HCD FTMS 0 0 0 6035 12713.912109375 0.3389538710899899 -5 0.1359710693359375 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IFDLVIDFF_ REV__ENSG00000148343|ENST00000684074|MIGA2;REV__FAM73B|p.M427I|1|0.17|ENSG00000148343|chr9:129068209-129068209|G/A|missense_variant 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 82252.6 NaN 3975 2062 6035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6040 35.843 NaN 18236 35 0 4648.6 0.261 -1 PCGPNMSEVSC 11 11 627.2331071416546 1252.4516613501091 2 627.2337646484375 MULTI HCD FTMS 0 0 0 6035 13972.1064453125 0.14797195769349594 49 -1.2518424987792969 5 2 Carbamidomethyl (C),Oxidation (M) _PC(Carbamidomethyl (C))GPNM(Oxidation (M))SEVSC(Carbamidomethyl (C))_ nc|ENSG00000129187|P32321-2|DCTD 0.35063188157827746 0.41738291418376766 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85233 NaN 3976 2062 6035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6042 35.848 NaN 162740 35 0 44668 0.327 + 32090 VYRGDLSPGS 10 31 525.763605922957 1049.512658912714 2 525.7635498046875 MULTI HCD FTMS 0 0 0 6041 52249.1328125 0.7520946656395666 1 -0.016574859619140625 1 Unmodified _VYRGDLSPGS_ nc|ENSG00000131067|Q9UJ14-6|GGT7 3.5964929083625545 0.45626689593999237 1 ES 2 9 14.693 0 0 1.4 0 0 0 830.4051461425439 830.4051461425439 10.088643834802156 0 0 0 0 0 0 0 0 ES 1.4 - 9 + NaN NaN 100656.1 NaN 3977 2063 6041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6043 35.852 NaN 225140 35 0 60305 0.262 + 15380 LPDGDHDL 8 47 441.20370656745365 880.3928602017073 2 441.2035217285156 MULTI HCD FTMS 0 0 0 6041 113077.5 0.11605036957043391 -7 0.18565750122070312 2 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 42.09456458481378 0.20402248593209013 1 {I|L}PDH[DG]D{I|L} 8 2 + 62.344 0 0 7.0814 7.0814 86.168 0 0 0 48.03518169636014 3.6844000031671698 3.6844000031671698 2.430380486862944 0 1.1237125054200234 1.6989700043360187 0.7742275032520141 0 {I|L}PDH[DG]D{I|L};{I|L}PD[DG]HD{I|L} 7.0814;6.8054 -;+ + 41 + NaN NaN 110779.1 NaN 3978 2063 6041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6044 35.856 NaN 72637 35 0 8543.1 0.261 -1 LPQHPDVEM 9 23 541.2516614215622 1080.4887699099243 2 541.2527465820312 MULTI HCD FTMS 0 0 0 6041 34832.078125 0.5374733614407956 -6 0.15584182739257812 3 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 21.536976647645854 0.1742816388551942 1 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9407 0 0 786.4020741246765 0 786.4020741246765 0 -0.6863623584101219 -0.6863623584101219 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.9407 + + 11 NaN NaN 87945.8 NaN 3979 2063 6041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6045 35.859 NaN 52142 35 0 7356.7 0.261 + 26554 SVNDNLKPERG 11 29 614.8181306445767 1227.6217083559534 2 614.8189697265625 MULTI HCD FTMS 0 0 0 6041 25900.419921875 0.6367849011128573 4 -0.08970260620117188 4 Unmodified _SVNDNLKPERG_ REV__ENSG00000119487|ENST00000265960|MAPKAP1;REV__ENST00000437973.2_1_9:128321910-128347898:-|nuORF;REV__nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1 6.630372943996041 0.3898421031449734 1 R{[NV]|[RG]} 3 -1 18.952 0 0 1.5438 0 0 840.397752830275 0 840.397752830275 0 18.952424927286845 0 0 0 1 0 0 0 R{[NV]|[RG]} 1.5438 - 4 NaN NaN 85171.5 NaN 3980 2063 6041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6047 35.864 NaN 326690 35 0 23969 0.327 + 28489 TPQDHEVAL 9 59 505.25155305141357 1008.4885531696272 2 505.25164794921875 MULTI HCD FTMS 0 0 0 6046 117194.6953125 0.5202891284214627 4 -0.0897064208984375 1 Unmodified _TPQDHEVAL_ ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;nc|ENSG00000129204|P35125-2|USP6 29.081581746732265 0.1154664336125038 1 TA{I|L} 3 6 36.867 0 0 3.6557 0 0 705.3085194318375 0 705.3085194318375 0 27.914478256039672 0 0 0 0.5 0 0.805462187404089 0 TA{I|L} 3.6557 - 80 NaN NaN 132075.1 NaN 3981 2064 6046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6048 35.869 NaN 344900 35 0 44768 0.262 -1 RYVRKFVLM 9 58 409.9057375497935 1226.6953832495806 3 409.9057312011719 MULTI HCD FTMS 0 0 0 6046 86491.890625 0.6366604992065725 10 -0.2556037902832031 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 1 {I|L}{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.2792 0 0 948.5667770895107 0 948.5667770895107 0 13.26606256887672 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2792 + + 35 NaN NaN 144824 NaN 3982 2064 6046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6049 35.872 NaN 129150 35 0 13439 0.261 + 13867 KYQAECSQF 9 45 552.2451985321683 1102.4758441311365 2 552.2451782226562 MULTI HCD FTMS 0 0 0 6046 52338.953125 0.8832605532446947 3 -0.07312774658203125 3 Unmodified _KYQAECSQF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 40.72490554402381 0.06201705472789164 1 AECSQ{M(Oxidation (M))|F} 6 3 54.346 0 0 4.9295 0 0 419.2159901349625 0 419.2159901349625 0 36.721675119240516 0 0 0 2.0356668758921828 0 0 0 + AECSQ{M(Oxidation (M))|F} 4.9295 + + 103 NaN NaN 94345.4 NaN 3983 2064 6046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6050 35.876 NaN 72934 35 0 5950.5 0.261 + 753 ASDCPGESTL 10 39 490.2056022263599 978.3966515195198 2 490.20556640625 MULTI HCD FTMS 0 0 0 6046 28260.25390625 0.47667919691831184 4 -0.0897064208984375 4 Unmodified _ASDCPGESTL_ nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B 13.042465956692817 0.38911719078024076 1 T{I|L} 2 8 25.217 0 0 2.5773 0 0 746.2550526349625 0 746.2550526349625 0 14.75895023531386 0 0 0 0.4247425010840047 0 0 0 + T{I|L} 2.5773 + + 9 NaN NaN 97340 NaN 3984 2064 6046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6051 35.879 NaN 27715 35 0 4664.8 0.261 -1 HLLCLDFTV 9 19 580.2966152896112 NaN 0 580.2691650390625 PEAK HCD FTMS 0 0 0 6046 5846.81640625 0.5683891864468503 -4 0.0861663818359375 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))HLLC(Carbamidomethyl (C))LDFTV_ ENSG00000170153|ENST00000515673|RNF150;nc|ENSG00000170153|Q9ULK6-2|RNF150;nc|ENSG00000170153|Q9ULK6-3|RNF150;RNF150|p.E35Q|1|0.13|ENSG00000170153|chr4:141132706-141132706|C/G|missense_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97939.9 NaN 3985 2064 6046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6053 35.884 NaN 182730 35 0 29725 0.327 + 13901 KYQEVTNNL 9 53 554.785147411307 1107.5557418894139 2 554.7852783203125 MULTI HCD FTMS 0 0 0 6052 100101.859375 0.04807365716375134 17 -0.44161224365234375 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 47.7319792270244 0.034743597693959835 1 [YQ]KEVTNN{I|L} 9 2 + 58.835 0 0 5.3121 5.3121 82.477 0 0 0 1.249387366082999 9.660677999045717 1.249387366082999 1.249387366082999 0 2.1237125054200234 0 0 0.3494850021680094 [YQ]KEVTNN{I|L};[YK]QEVTNN{I|L};[YQ]KEVTGGN{I|L};[YQ]KEVTNGG{I|L};[YK][AG]EVTNN{I|L};[YK]QEVTGGN{I|L};[YK]QEVTNGG{I|L};[YQ]{NN|[MP]|[D{I|L}]|[EV]}KTNN{I|L};[YQ]{NN|[MP]|[D{I|L}]|[EV]}KTGGN{I|L};[YQ]{NN|[MP]|[D{I|L}]|[EV]}KTNGG{I|L} 5.3121;5.1993;4.4807;4.4807;4.3679;4.3679;4.3679;4.1592;3.3278;3.3278 -;+;-;-;-;-;-;-;-;- + 159 NaN NaN 124123.9 NaN 3986 2065 6052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6054 35.889 NaN 104880 35 0 9826.4 0.261 + 767 ASLEPTATSL 10 47 495.2612238334894 988.5078947337788 2 495.26025390625 MULTI HCD FTMS 0 0 0 6052 38406.59765625 0.12526699260931434 -5 0.10610198974609375 2 Unmodified _ASLEPTATSL_ ENSG00000261272|ENST00000561890|MUC22 26.268140514670165 0.2654086933305545 1 {I|L}E[W{I|L}]SA{I|L} 7 7 32.708 0 0 3.3088 0 0 158.06904799629064 0 158.06904799629064 0 32.70766971142507 0 0 0 1.4247425010840047 0 0 0 {I|L}E[W{I|L}]SA{I|L} 3.3088 - 32 NaN NaN 91217.2 NaN 3987 2065 6052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6055 35.892 NaN 13689 35 0 3115.4 0.261 + 159 AEIVEGENHTY 11 12 631.2886161363017 1260.5626793394033 2 631.2886352539062 MULTI HCD FTMS 0 0 0 6052 7126.65966796875 0.05646463868199638 14 -0.36185455322265625 3 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 3.876331618118854 0.4019203928379901 1 VE 2 9 15.969 0 0 1.2668 0 0 313.16559789584704 716.2639254205686 1029.4295233164157 0 0 0 0 0 0.5 0 0 0 + VE 1.2668 + + 3 + NaN NaN 84461.7 NaN 3988 2065 6052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6056 35.896 NaN 34633 35 0 5668.2 0.263 -1 LVMAPLRE 8 21 485.77293732685155 NaN 0 485.77301025390625 PEAK HCD FTMS 0 0 0 6052 6090.20947265625 0.7365951222519748 1 -0.01995849609375 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LVMAPLRE_ ENST00000589091.1_1_19:10251445-10251985:-|nuORF 0.7936320650641473 0.38822285293237185 1 V 1 -1 5.4846 0 0 0.56569 0 0 474.262200482025 393.17768274478755 867.4398832268125 0 0 0 0 0 0 0 0 0 V 0.56569 + + 1 + NaN NaN 85514.1 NaN 3989 2065 6052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6057 35.899 NaN 22545 35 0 3149.6 0.261 + 32541 WHRTQAHYC 9 18 601.2690708827996 1200.5235888323991 2 601.2689208984375 MULTI HCD FTMS 0 0 0 6052 11684.7080078125 0.6175956368995443 -3 0.0563812255859375 5 Unmodified _WHRTQAHYC_ REV__ENSG00000086758|ENST00000262854|HUWE1;REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;REV__nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95547.3 NaN 3990 2065 6052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6059 35.904 NaN 1094300 35 0 278390 0.327 + 24497 RYLEKPMEI 9 77 597.8130841336915 1193.611615334183 2 597.8132934570312 MULTI HCD FTMS 0 0 0 6058 464367.3125 0.9752519486329051 1 -0.033233642578125 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 80.6760300276096 0.005633624786464751 1 {I|L}NNYKE{I|L} 7 6 63.907 0 0 5.3541 0 0 0 316.1410311334594 316.1410311334594 33.26683554084717 0 0 0 0 1.218765315847925 1.6989700043360187 0.9731975075880328 0.3807196863200844 {I|L}NNYKE{I|L} 5.3541 - 1084 + NaN NaN 247150.2 NaN 3991 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6060 35.909 NaN 150980 35 0 24906 0.261 -1 HSLPQEPVM 9 40 527.2553013462582 1052.4960497593163 2 527.2550659179688 MULTI HCD FTMS 0 0 0 6058 42207.64453125 0.3189250284121029 17 -0.4382438659667969 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 20.41453444215458 0.18397929046831515 1 E[VP]{M(Oxidation (M))|F} 4 -1 30.445 0 0 2.8927 0 0 562.2868581368742 0 562.2868581368742 0 12.72538057041615 0 0 0 1.4247425010840047 0 0 0 E[VP]{M(Oxidation (M))|F} 2.8927 + + 53 NaN NaN 106529.5 NaN 3992 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6061 35.912 NaN 60893 35 0 6261 0.261 + 8174 GPSENDPNL 9 33 471.711806321622 941.4090597100441 2 471.7117614746094 MULTI HCD FTMS 0 0 0 6058 27484.708984375 0.6004090428899838 5 -0.12940216064453125 3 Unmodified _GPSENDPNL_ ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 18.373094154950223 0.20161688160436167 1 ND[NP]{I|L} 5 4 20.222 0 0 2.148 0 0 370.1483631818375 0 370.1483631818375 0 19.737059521965108 0 0 0 1.1549471895720984 0 0 0 + ND[NP]{I|L} 2.148 + + 16 NaN NaN 89075.7 NaN 3993 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6062 35.916 NaN 105600 35 0 9756.1 0.261 + 13868 KYQAECSQF 9 47 552.2451985321683 1102.4758441311365 2 552.2451171875 MULTI HCD FTMS 0 0 0 6058 38530.7265625 0.6502359873196987 5 -0.12940216064453125 4 Unmodified _KYQAECSQF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 22.65808497894818 0.16459551161911185 1 C{[QS]|[NT]}{M(Oxidation (M))|F} 4 5 30.005 0 0 2.7216 0 0 619.2959887408609 0 619.2959887408609 0 11.077184142563468 0 0 0 1.3807196863200843 0 0 0 + C{[QS]|[NT]}{M(Oxidation (M))|F} 2.7216 + + 54 NaN NaN 99213.2 NaN 3994 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6063 35.919 NaN 90766 35 0 12424 0.264 + 20042 NYIKRNWRI 9 39 421.5752339534141 1261.7038724604424 3 421.5751037597656 MULTI HCD FTMS 0 0 0 6058 21363.1953125 0.45727221685944114 -6 0.12606048583984375 5 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 7.608950283845883 0.29333554423920943 1 [YN]{I|L} 3 6 27.324 0 0 2.1657 0 0 0 868.4902772670312 868.4902772670312 5.132717555561452 0 0 0 0 0.28872548999643577 1.6989700043360187 0 0 + [YN]{I|L} 2.1657 + + 14 + NaN NaN 94677 NaN 3995 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6064 35.922 NaN 31808 35 0 3461.1 0.261 + 8692 HFYPNPLA 8 23 479.74244349598814 957.4703340587763 2 479.74261474609375 MULTI HCD FTMS 0 0 0 6058 10436.6708984375 0.5298518488330781 1 -0.033233642578125 6 Unmodified _HFYPNPLA_ ENSG00000268041|ENST00000597630|ERFL 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 81380.2 NaN 3996 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6065 35.926 NaN 49379 35 0 8441.9 0.261 -1 SPQRQNRMPP 10 25 613.8068482538625 NaN 0 613.8072509765625 PEAK HCD FTMS 0 0 0 6058 8529.3623046875 0.6788095230323263 1 -0.033233642578125 7 Oxidation (M) _SPQRQNRM(Oxidation (M))PP_ ENSG00000174373|ENST00000680220|RALGAPA1;RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99896 NaN 3997 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6066 35.929 NaN 19997 35 0 5887 0.264 + -1 HPPCYLCKRH 10 16 456.55306303894196 NaN 0 456.1974792480469 PEAK HCD FTMS 0 0 0 6058 2800.580322265625 1 0 0 8 2 Carbamidomethyl (C) _HPPC(Carbamidomethyl (C))YLC(Carbamidomethyl (C))KRH_ REV__ENST00000471578.5_1_1:224622371-224703543:+|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77570.1 NaN 3998 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6067 35.932 NaN 14651 35 0 4404.7 0.261 + -1 FFCLIRVPE 9 12 590.8146344015756 NaN 0 590.8153076171875 PEAK HCD FTMS 0 0 0 6058 2909.05615234375 0.37200819776540833 -1 0.01995849609375 9 Carbamidomethyl (C) _FFC(Carbamidomethyl (C))LIRVPE_ REV__ENST00000374677.7_1_6:33168670-33168802:+|nuORF 0.6014990680409731 0.29233206172879045 1 T 1 -1 5.4846 0 0 0.46494 0 0 571.8513624537387 503.7071932428344 1075.5585556965732 0 0 0 0 0 0 0 0 0 T 0.46494 - 1 + NaN NaN 79759.4 NaN 3999 2066 6058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6069 35.938 NaN 545810 35 0 52358 0.327 + 27742 TATKIEITM 9 61 512.2732761611027 1022.5319993890054 2 512.2733154296875 MULTI HCD FTMS 0 0 0 6068 350082.65625 0.9646227205082637 1 -0.01657867431640625 1 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 103.41943736471063 0.004016698775839292 1 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 84.434 0 0 8.2573 8.2573 95.035 0 0 0 2.539237471316298 2.539237471316298 2.539237471316298 21.03408749299639 0 2.5356668758921828 1.3979400086720375 1.0994850021680094 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 8.2573;6.2003 +;- + 259 + NaN NaN 167044.1 NaN 4000 2067 6068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6070 35.942 NaN 373660 35 0 80597 0.261 + 2611 DVAEVDTVR 9 51 502.25651525013734 1002.4984775670747 2 502.2564392089844 MULTI HCD FTMS 0 0 0 6068 177368.640625 0.6389989670497308 -2 0.053192138671875 2 Unmodified _DVAEVDTVR_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 117.76058876431921 0.001675465467887476 1 [DV]AEVDTVR 9 0 + 110.75 0 0 11.048 11.048 97.576 0 0 0 11.657679074303033 11.657679074303033 11.657679074303033 22.678278987582658 0 3.0994850021680094 2 1.6549471895720984 0.23965182871044374 + + [DV]AEVDTVR;[DV]EAVDTVR;[DV]AEV[VS]ER;[DV]EAV[VS]ER;[DV]A[VS]VEER;[DV]EKVEER;{[QN]|[E{I|L}]|[KN]}[DG]VDTVR;{[CP]|[EA]}[DV]VDTVR;[DV]A[VS]EEVR;[DV]EKEEVR 11.048;8.7855;8.1646;7.0653;6.0862;5.9108;5.151;5.1466;4.8431;4.6677 +;-;-;-;-;-;-;-;-;- + 475 + NaN NaN 136161 NaN 4001 2067 6068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6071 35.946 NaN 143420 35 0 14756 0.261 -1 ADKMDMSL 8 37 492.7044437294587 983.3943345257175 2 492.7044372558594 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 23.789781309258295 0.41875705117726625 1 {M(Oxidation (M))|F}S{I|L} 3 -1 35.005 0 0 3.5596 0 0 618.2321644513687 0 618.2321644513687 0 16.98506789313896 0 0 0 0.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}S{I|L} 3.5596 + + 10 NaN NaN 108219 NaN 4002 2067 6068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6072 35.949 NaN 123330 35 0 13896 0.261 + 27608 TAHFEQNTL 9 42 530.757084153755 1059.49961537431 2 530.756591796875 MULTI HCD FTMS 0 0 0 6068 75829.8984375 0.3824201404386011 7 -0.18247604370117188 4 Unmodified _TAHFEQNTL_ ENSG00000153975|ENST00000368576|ZUP1 12.240655878213236 0.2545997876781172 1 {[{M(Oxidation (M))|F}D]|MM}[HV]SQNT{I|L} 9 4 + 39.587 0 0 3.7364 3.7364 85.126 0 0 0 0.915149811213503 32.59758745913772 0.915149811213503 9.208187539523756 0 0.4247425010840047 0 0 0.4247425010840047 {[{M(Oxidation (M))|F}D]|MM}[HV]SQNT{I|L};{[{M(Oxidation (M))|F}D]|MM}[HV]S[AG]NT{I|L};{[{M(Oxidation (M))|F}D]|MM}[HV]SQGGT{I|L};{[{M(Oxidation (M))|F}D]|MM}[HV]SQ[VG][TA] 3.7364;2.8673;2.8673;0.74609 -;-;-;- 85 NaN NaN 94448.4 NaN 4003 2067 6068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6074 35.954 NaN 1113100 35 0 98291 0.327 + 29774 VEEETVEVLT 10 66 574.2907481779872 1146.5669434227743 2 574.291015625 MULTI HCD FTMS 0 0 0 6073 496189.1875 0.1123135366791364 14 -0.3718414306640625 1 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 61.357469665136826 0.03648492562855298 1 {[TV]|[{I|L}S]}[WY]HEVT 8 -1 67.643 0 0 5.8996 0 0 0 128.07295496062991 128.07295496062991 31.76136488642036 0 0 0 0 1.7059771852360797 1.3979400086720375 2.048455006504028 0 {[TV]|[{I|L}S]}[WY]HEVT 5.8996 - 851 NaN NaN 250786.7 NaN 4004 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6075 35.959 NaN 205080 35 0 19065 0.261 + 1524 AYVHMVTHF 9 54 560.7657107079392 1119.5168684826783 2 560.7659912109375 MULTI HCD FTMS 0 0 0 6073 88804.8046875 0.07803390221554206 41 -1.07275390625 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 104.79918948944588 0.003791450360204016 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 100.14 0 0 8.9452 8.9452 90.003 0 0 0 4.286662482156345 4.286662482156345 4.286662482156345 4.286662482156345 0 2.853917193908117 2 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F} 8.9452;8.5623;7.5188;4.5882;2.9003;2.7784;2.379 +;+;-;-;-;-;- + 506 + NaN NaN 112917.7 NaN 4005 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6076 35.962 NaN 103330 35 0 30059 0.261 + 12526 KRYVNDKFG 9 34 563.8037964551831 1125.5930399771662 2 563.8038940429688 MULTI HCD FTMS 0 0 0 6073 52652.44140625 0.5561968191163325 -3 0.06977081298828125 3 Unmodified _KRYVNDKFG_ REV__ENSG00000129167|ENST00000682019|TPH1;REV__nc|ENSG00000129167|P17752-2|TPH1 2.0597508629832335 0.3354026079994024 1 S 1 -1 3.9794 0 0 0.35354 0 0 198.1629385140787 837.3702486627561 1035.5331871768349 0 0 0 0 0 0 0 0 0 S 0.35354 - 6 + NaN NaN 102664.8 NaN 4006 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6077 35.965 NaN 118600 35 0 29294 0.261 + 34724 YPVKEQESI 9 40 546.7823505471317 1091.5501481610634 2 546.782470703125 MULTI HCD FTMS 0 0 0 6073 25439.521484375 0.4277794323282016 4 -0.10945892333984375 4 Unmodified _YPVKEQESI_ ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5 8.155526934196011 0.2891920862272901 1 YPV 3 6 37.167 0 0 3.405 0 0 0 729.3413179986936 729.3413179986936 24.776296993281406 0 0 0 0 0 1.3979400086720375 0 0 + YPV 3.405 + + 24 + NaN NaN 103812.5 NaN 4007 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6078 35.969 NaN 93490 35 0 9160.9 0.261 + 19487 NQADHPVLA 9 41 482.74589332675896 963.4772337203179 2 483.2561340332031 MULTI HCD FTMS 0 0 0 6073 16640.861328125 0.20769409395615845 -5 0.10628128051757812 5 Unmodified _NQADHPVLA_ ENST00000497283.1_1_3:50649969-50651260:+|nuORF 4.75600775471527 0.31496297302216103 1 A 1 8 4.6041 0 0 0.47786 0 0 130.07099700332418 759.3418636408466 889.4128606441707 0 0 0 0 0 0 0 0 0 + A 0.47786 + + 16 + NaN NaN 86493 NaN 4008 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6079 35.972 NaN 55724 35 0 6959.4 0.261 -1 TCLNPVVM 8 35 475.22707224176054 NaN 0 475.2183837890625 PEAK HCD FTMS 0 0 0 6073 2916.749755859375 0.27204300786348884 -2 0.04981231689453125 6 Carbamidomethyl (C),Oxidation (M) _TC(Carbamidomethyl (C))LNPVVM(Oxidation (M))_ ENST00000561346.5_1_15:57524542-57524910:+|nuORF 6.354104778181461 0.38822285293237185 1 VV 2 -1 20.969 0 0 2.2109 0 0 585.2578421380149 162.02303491763908 747.280877055654 0 0 0 0 0 1 0 0 0 VV 2.2109 + + 6 + NaN NaN 90856.3 NaN 4009 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6080 35.975 NaN 51385 35 0 6066.3 0.261 -1 YLPAEKQM 8 35 498.2448828162664 NaN 0 498.22833251953125 PEAK HCD FTMS 0 0 0 6073 1696.280029296875 0.5776132441403286 -1 0.01657867431640625 7 Oxidation (M) _YLPAEKQM(Oxidation (M))_ ENSG00000214814|ENST00000522917|FER1L6 6.354104778181461 0.38822285293237185 1 Y 1 -1 4.6041 0 0 0.46297 0 0 313.13855606046405 515.2462252252561 828.3847812857202 0 0 0 0 0 0 0 0 0 Y 0.46297 + + 1 + NaN NaN 89508.1 NaN 4010 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6081 35.979 NaN 18742 35 0 5824.5 0.261 + 25598 SFYKRSLDND 10 19 622.7993778930571 1243.5842028529141 2 622.7984619140625 MULTI HCD FTMS 0 0 0 6073 17111.796875 0.24390548096086048 13 -0.34856414794921875 8 Unmodified _SFYKRSLDND_ ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1 0.5059551277355931 0.472625603730984 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 76708.1 NaN 4011 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6082 35.982 NaN 29035 35 0 4399.3 0.261 + -1 PDQDIACPIL 10 20 571.2820904804228 1140.5496280276454 2 571.2440795898438 MULTI HCD FTMS 0 0 0 6073 5914.62353515625 0.9562432331407266 -1 0.01657867431640625 9 Carbamidomethyl (C) _PDQDIAC(Carbamidomethyl (C))PIL_ REV__ENSG00000140105|ENST00000392882|WARS1;REV__nc|ENSG00000140105|P23381-2|WARS1 1.4819007175156935 0.4674597685733628 1 W 1 -1 6.9897 0 0 0.61284 0 0 639.2934767598705 312.1473787897094 951.44085554958 0 0 0 0 0 0 0 0 0 W 0.61284 - 1 + NaN NaN 85594.6 NaN 4012 2068 6073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6084 35.987 NaN 173760 35 0 17432 0.327 -1 KYMKEKLLF 9 50 405.89830317500696 1214.6730801252208 3 405.89825439453125 MULTI HCD FTMS 0 0 0 6083 73365.390625 0.7497375933991457 -2 0.049747467041015625 1 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 7.101721422024254 0.29718071671418667 1 K{M(Oxidation (M))|F} 2 -1 26.454 0 0 2.1778 0 0 921.5049915998062 0 921.5049915998062 0 10.969100130080562 0 0 0 0.5 0 0 0.5 K{M(Oxidation (M))|F} 2.1778 - 8 NaN NaN 107710.4 NaN 4013 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6085 35.992 NaN 30593 35 0 4931.6 0.261 -1 KYMETIEKL 9 19 585.8073470437934 1169.6001411543866 2 585.8074951171875 MULTI HCD FTMS 0 0 0 6083 23078.44140625 0.6152730163679332 2 -0.046421051025390625 2 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion;PPP1R21-GTF2A1L|3|fusion 2.9952420565917617 0.3283108881486655 1 E 1 -1 6.9897 0 0 0.59761 0 0 259.1925006287991 778.3452852838499 1037.537785912649 0 0 0 0 0 0 0 0 0 E 0.59761 + + 1 + NaN NaN 83417.9 NaN 4014 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6086 35.995 NaN 128330 35 0 41584 0.261 + 9431 HPVGTDEEPL 10 38 547.2619345027894 1092.5093160723786 2 547.261962890625 MULTI HCD FTMS 0 0 0 6083 54926.6640625 0.747342700203944 -1 0.033168792724609375 3 Unmodified _HPVGTDEEPL_ ENSG00000115414|ENST00000354785|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1 14.838274106304384 0.3723198072575719 1 EP{I|L} 3 7 35.445 0 0 3.2444 0 0 735.321580955275 0 735.321580955275 0 31.46591250700361 0 0 0 0.5 0 0.4247425010840047 0 + EP{I|L} 3.2444 + + 11 NaN NaN 95813.8 NaN 4015 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6087 35.999 NaN 77002 35 0 6677.3 0.261 + 7122 FRVWFPPP 8 34 523.2843470591605 NaN 0 523.2658081054688 PEAK HCD FTMS 0 0 0 6083 3108.921630859375 0.3424336091236584 -3 0.08298110961914062 4 Unmodified _FRVWFPPP_ REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF 2.577480529830294 0.38822285293237185 1 P 1 -1 5.4846 0 0 0.52506 0 0 114.0955598906274 830.3820894830686 944.4776493736961 0 0 0 0 0 0 0 0 0 P 0.52506 + + 1 + NaN NaN 92953 NaN 4016 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6088 36.002 NaN 64639 35 0 6249.5 0.261 + 3161 EAVGGLQTVR 10 33 515.2884488037975 NaN 0 515.2879638671875 PEAK HCD FTMS 0 0 0 6083 31890.369140625 1 0 0 5 Unmodified _EAVGGLQTVR_ ENSG00000204267|ENST00000374897|TAP2;nc|ENSG00000204267|Q03519-2|TAP2 16.565877749689598 0.30845283317438627 1 VG{[VA]|[{I|L}G]}QTV 7 3 12.426 0 0 1.2081 0 0 200.08237980836344 171.08893762760002 371.1713174359635 0 0 0 0 0 0 0 0.3252574989159953 0 + VG{[VA]|[{I|L}G]}QTV 1.2081 + + 58 + NaN NaN 92793.6 NaN 4017 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6089 36.005 NaN 35013 35 0 7097.3 0.261 -1 KQTMGFEVPGV 11 23 604.8024119161821 1207.5902708991641 2 604.80322265625 MULTI HCD FTMS 0 0 0 6083 9046.54296875 0.5849985680775708 -3 0.08298110961914062 6 Oxidation (M) _KQTM(Oxidation (M))GFEVPGV_ ENSG00000112339|ENST00000367837|HBS1L;nc|ENSG00000112339|Q9Y450-4|HBS1L 2.9952420565917617 0.40578455234410343 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92454 NaN 4018 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6090 36.009 NaN 43369 35 0 8085.6 0.263 + 9598 HSLAGLWW 8 28 485.2506753087812 NaN 0 485.2508850097656 PEAK HCD FTMS 0 0 0 6083 6099.54833984375 0.37328834584035125 16 -0.4051399230957031 7 Unmodified _HSLAGLWW_ ENST00000478824.1_1_17:46783758-46784010:+|nuORF 2.577480529830294 0.38822285293237185 1 E 1 8 6.9897 0 0 0.72171 0 0 166.12273626033738 670.2973116510374 836.4200479113747 0 0 0 0 0 0 0 0 0 E 0.72171 - 1 + NaN NaN 98759.7 NaN 4019 2069 6083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6092 36.014 NaN 1235200 35 0 384190 0.327 + 15381 LPDGDHDL 8 70 441.20370656745365 880.3928602017073 2 441.2038269042969 MULTI HCD FTMS 0 0 0 6091 974382.9375 1 0 0 1 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 109.62928328672726 0.035128097911409736 1 {I|L}PD[DG]HD{I|L} 8 0 + 95.214 0 0 10.815 10.815 96.084 0 0 0 72.66492624912769 13.399480616943507 13.399480616943507 13.278324880759484 0 2.2302046884880937 1.6989700043360187 1.3807196863200843 0 + + {I|L}PD[DG]HD{I|L};{I|L}PD[HD]GD{I|L};[{I|L}P]D[DG]HD{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[DG]HD{I|L};[DP]{I|L}[DG]HD{I|L};[HD]GDP{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}[VS][YG]D{I|L};[HD]GD{I|L}PD{I|L};[HD]GDDP{I|L}{I|L};[DP]N[NP]PD{I|L} 10.815;9.3068;8.1107;6.5039;4.9291;3.2535;3.2382;3.1435;2.9436;2.6544 +;-;+;-;-;-;-;-;-;- + 420 + NaN NaN 266186.5 NaN 4020 2070 6091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6093 36.018 NaN 271250 35 0 30606 0.261 + 28255 TLLPFLYTLF 10 60 409.9057375497935 1226.6953832495806 3 409.9058837890625 MULTI HCD FTMS 0 0 0 6091 80067.578125 0.589371603406591 16 -0.4018058776855469 2 Unmodified _TLLPFLYTLF_ ENSG00000090402|ENST00000264382|SI;SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant 6.723162845929126 0.4397169348982109 1 {I|L}{M(Oxidation (M))|F} 2 8 27.959 0 0 2.2792 0 0 948.5647111589633 0 948.5647111589633 0 12.016675202793719 0 0 0 0.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2792 + + 49 NaN NaN 118907.1 NaN 4021 2070 6091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6094 36.022 NaN 123600 35 0 12770 0.261 -1 LPQHPDVEM 9 32 541.2516614215622 1080.4887699099243 2 541.2528076171875 MULTI HCD FTMS 0 0 0 6091 58345.6015625 0.9002967461357061 1 -0.01987457275390625 3 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 24.990960013464015 0.14443998892849796 1 VE{M(Oxidation (M))|F} 3 -1 30.93 0 0 2.8626 0 0 687.3325672834 0 687.3325672834 0 26.95046257204389 0 0 0 0.7742275032520141 0 0 0 VE{M(Oxidation (M))|F} 2.8626 + + 15 NaN NaN 116493 NaN 4022 2070 6091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6095 36.025 NaN 115960 35 0 10032 0.261 -1 QPMQPTPSM 9 46 516.7281620279355 1031.4417711226708 2 516.728271484375 MULTI HCD FTMS 0 0 0 6091 33656.05859375 0.7374663180286803 1 -0.01987457275390625 4 Oxidation (M) _QPMQPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 24.020572477871973 0.15282392193088168 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 102844.6 NaN 4023 2070 6091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6096 36.028 NaN 110030 35 0 24629 0.261 + 17752 MEDQDLKP 8 30 488.2265735452628 974.4385941573256 2 488.22613525390625 MULTI HCD FTMS 0 0 0 6091 31396.447265625 0.5307997277547267 -6 0.14942169189453125 5 Unmodified _MEDQDLKP_ ENSG00000145736|ENST00000274400|GTF2H2;ENSG00000183474|ENST00000380729|GTF2H2C;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000508325.5_1_5:68860950-68862940:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF 7.910154910731844 0.5302565402355366 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98110.3 NaN 4024 2070 6091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6098 36.034 NaN 780960 35 0 219340 0.327 + 24498 RYLEKPMEI 9 61 597.8130841336915 1193.611615334183 2 597.8134155273438 MULTI HCD FTMS 0 0 0 6097 373251.1875 0.7838922726476809 6 -0.16592025756835938 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 57.24910588100465 0.021429789259086996 1 RY{[QG]|[NA]}KE 6 5 32.752 0 0 2.7439 0 0 0 429.2242830865844 429.2242830865844 11.260036936161214 0 0 0 0 1 0 0.3494850021680094 0.3807196863200844 RY{[QG]|[NA]}KE 2.7439 - 250 + NaN NaN 197724.9 NaN 4025 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6099 36.038 NaN 454720 35 0 49225 0.262 + 25168 SALEKEEAL 9 73 495.2612238334894 988.5078947337788 2 495.2613525390625 MULTI HCD FTMS 0 0 0 6097 269996.09375 0.880619496239629 1 -0.02986907958984375 2 Unmodified _SALEKEEAL_ ENSG00000107960|ENST00000224950|STN1 80.6760300276096 0.005633624786464751 1 {[SA]|[TG]}{I|L}EG{I|L}SEA{I|L} 10 3 + 68.796 0 0 6.9596 6.9596 85.781 0 0 0 8.379231027444405 57.36957297830479 8.379231027444405 2.060544824331245 0 2.274227503252014 0 0.8921590589602533 0 {[SA]|[TG]}{I|L}EG{I|L}SEA{I|L};{[SA]|[TG]}{I|L}EKEEA{I|L};{[SA]|[TG]}{I|L}EG{I|L}ESA{I|L};{[SA]|[TG]}{I|L}{[VA]|[{I|L}G]}ESEA{I|L};{[SA]|[TG]}{I|L}{[VA]|[{I|L}G]}EESA{I|L};{[SA]|[TG]}{I|L}{[VA]|[{I|L}G]}SEEA{I|L};{[SA]|[TG]}{I|L}EG{I|L}E{I|L}{[SA]|[TG]};{[SA]|[TG]}{I|L}E{I|L}{I|L}D[QT];{[SA]|[TG]}{I|L}E{I|L}{I|L}DA{[SA]|[TG]};{[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}G{I|L}SEA{I|L} 6.9596;6.7512;6.6061;4.9247;4.5712;4.5221;4.3351;3.8221;3.7758;3.5408 -;+;-;-;-;-;-;-;-;- + 1048 NaN NaN 142046.8 NaN 4026 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6100 36.042 NaN 103770 35 0 16058 0.261 + 13902 KYQEVTNNL 9 37 554.785147411307 1107.5557418894139 2 554.7855224609375 MULTI HCD FTMS 0 0 0 6097 66089.8125 0.0317394602655612 23 -0.5942420959472656 3 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 23.789781309258295 0.1548179064208189 1 KTN{[QV]|[N{I|L}]|[RA]|[KV]} 5 4 28.724 0 0 2.5934 0 0 519.2328968732437 0 519.2328968732437 0 25.6246936830415 0 0 0 1 0 0 0 KTN{[QV]|[N{I|L}]|[RA]|[KV]} 2.5934 - 28 NaN NaN 90017.8 NaN 4027 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6101 36.045 NaN 95479 35 0 17276 0.261 + 33792 YLGPGGIGDF 10 29 498.2448828162664 NaN 0 498.2552185058594 PEAK HCD FTMS 0 0 0 6097 2826.72509765625 0.9625497121645099 1 -0.02986907958984375 4 Unmodified _YLGPGGIGDF_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000520678.1_1_8:43037358-43049067:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 3.944395688203298 0.33680843299986807 1 AYS 3 10 8.1876 0 0 0.82331 0 0 242.10425430265155 428.2139986627563 670.3182529654079 0 0 0 0 0 0 0 0 0 AYS 0.82331 - 10 + NaN NaN 92995.1 NaN 4028 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6102 36.048 NaN 60421 35 0 20428 0.261 + -1 ICVVHLCW 8 15 543.7668371777837 NaN 0 543.7570190429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _IC(Carbamidomethyl (C))VVHLC(Carbamidomethyl (C))W_ REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF 2.8892196856762586 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.6439 0 0 113.10506677107294 872.3384446340799 985.4435114051529 0 0 0 0 0 0 0 0 0 P 0.6439 - 1 + NaN NaN 95478.1 NaN 4029 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6103 36.052 NaN 24647 35 0 5403.4 0.261 -1 ECWEFYSAI 9 14 602.7525681418249 1203.4905833504497 2 603.2553100585938 MULTI HCD FTMS 0 0 0 6097 9043.154296875 0.73526494959092 1 -0.02986907958984375 6 Carbamidomethyl (C) _EC(Carbamidomethyl (C))WEFYSAI_ ENST00000374024.3_1_1:27721341-27721638:+|nuORF 1.844237919475145 0.33703635659052655 1 A{I|L} 2 -1 20.969 0 0 1.7424 0 0 1001.3625355451187 0 1001.3625355451187 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 1.7424 + + 1 NaN NaN 93379.2 NaN 4030 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6104 36.055 NaN 19085 35 0 4489.1 0.261 + -1 KFRCKWCL 8 16 570.7939741990084 1139.5733954648167 2 570.7937622070312 MULTI HCD FTMS 0 0 0 6097 17077.349609375 0.6248695211198193 12 -0.3088417053222656 7 Carbamidomethyl (C) _KFRC(Carbamidomethyl (C))KWCL_ REV__ENST00000457861.1_1_7:935511-935808:+|nuORF 2.302733041254933 0.5385759549224092 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.91767 0 0 806.3893910138687 0 806.3893910138687 0 10.45757490560675 0 0 0 0 0 0 0 V{[ES]|[DT]|[{I|L}C]} 0.91767 - 1 NaN NaN 80010.9 NaN 4031 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6105 36.058 NaN 33492 35 0 8966.6 0.261 + 9959 IEFYWTKK 8 29 557.7978515625 NaN 0 557.7978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _IEFYWTKK_ REV__ENST00000550389.5_1_12:69864206-69955999:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99962.9 NaN 4032 2071 6097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6107 36.064 NaN 235520 35 0 19392 0.327 + 794 ATDDPAARF 9 58 482.2302036831377 962.4458544330754 2 482.7460021972656 MULTI HCD FTMS 0 0 0 6106 7790.4501953125 0.730014627890175 1 -0.0299224853515625 1 Unmodified _ATDDPAARF_ ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9 8.155526934196011 0.2891920862272901 1 T{M(Oxidation (M))|F} 2 7 16.454 0 0 1.7096 0 0 696.3524954040466 0 696.3524954040466 0 1.7609125905568135 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.7096 - 177 + NaN NaN 113066.2 NaN 4033 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6108 36.068 NaN 113590 35 0 15813 0.261 + 20043 NYIKRNWRI 9 45 421.5752339534141 1261.7038724604424 3 421.5754699707031 MULTI HCD FTMS 0 0 0 6106 46718.76953125 1 0 0 2 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 10.150570793230772 0.27265765907388223 1 NY{I|L} 3 6 47.435 0 0 3.7596 0 0 0 868.4900440909712 868.4900440909712 39.3360688456422 0 0 0 0 0.4247425010840047 2 0 0 + NY{I|L} 3.7596 + + 13 + NaN NaN 105049.8 NaN 4034 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6109 36.072 NaN 153260 35 0 17542 0.261 + 28438 TPIVERHVL 9 41 532.3167437205282 1062.6189345078562 2 532.3170776367188 MULTI HCD FTMS 0 0 0 6106 52335.71875 0.849370180946781 -1 0.02986907958984375 3 Unmodified _TPIVERHVL_ ENSG00000164465|ENST00000338728|DCBLD1 22.65808497894818 0.16459551161911185 1 TP{I|L}V 4 5 30.918 0 0 2.9096 0 0 0 649.3415543677121 649.3415543677121 4.948500216800937 0 0 0 0 0.5 0 0 0 + TP{I|L}V 2.9096 + + 13 + NaN NaN 103572.1 NaN 4035 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6110 36.075 NaN 199400 35 0 19017 0.261 + 28723 TSSGNPIFR 9 55 489.7539153237895 977.493277714379 2 489.7540283203125 MULTI HCD FTMS 0 0 0 6106 43862.1796875 0.8216032120963166 -1 0.02986907958984375 4 Unmodified _TSSGNPIFR_ ENSG00000124571|ENST00000265351|XPO5 17.11289562659939 0.2125047172822487 1 {[MG]|[TS]}S[KC]APV[VS] 10 6 {[MG]|[TS]} + + 23.408 1.7339 0.92192 2.3947 2.3947 59.002 0 0 0 0 16.954321750294667 0 0 0 0.3054621874040891 0 0.75 0 {[MG]|[TS]}S[KC]APV[VS] 2.3947 - 100 + NaN NaN 112579.6 NaN 4036 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6111 36.078 NaN 103570 35 0 17926 0.261 -1 HSLPQEPVM 9 34 527.2553013462582 1052.4960497593163 2 527.2557373046875 MULTI HCD FTMS 0 0 0 6106 25373.720703125 0.19172627816682491 23 -0.5843162536621094 5 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 20.41453444215458 0.18397929046831515 1 E[VP]{M(Oxidation (M))|F} 4 -1 29.693 0 0 2.8212 0 0 562.2875843732437 0 562.2875843732437 0 22.703037561203843 0 0 0 1.3494850021680094 0 0 0 E[VP]{M(Oxidation (M))|F} 2.8212 + + 17 NaN NaN 85905.1 NaN 4037 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6112 36.082 NaN 68174 35 0 7088.2 0.261 + 9383 HPTDVDYRV 9 34 551.2700903728382 1100.5256278124764 2 551.7547607421875 MULTI HCD FTMS 0 0 0 6106 8884.2138671875 0.093819706554818 25 -0.6412086486816406 6 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 7.289230182591677 0.29575926068275815 1 EV[HS]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 6 8 6.6555 0 0 0.60475 0 0 396.2119312970719 0 396.2119312970719 0 1.170912423450405 0 0 0 0 0 0 0 EV[HS]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 0.60475 - 9 NaN NaN 96463.7 NaN 4038 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6113 36.085 NaN 105780 35 0 6502.1 0.264 + 22104 QIEKKSLICF 10 40 403.56188671925 1207.66383075795 3 403.5615234375 MULTI HCD FTMS 0 0 0 6106 20078.33984375 0.8520528784325843 -1 0.02986907958984375 7 Unmodified _QIEKKSLICF_ REV__ENSG00000065183|ENST00000349139|WDR3 3.944395688203298 0.4544253912184634 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1174 0 0 1042.5841168681047 0 1042.5841168681047 0 3.037275116073344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1174 + + 3 + NaN NaN 97830.1 NaN 4039 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6114 36.088 NaN 18158 35 0 2926.6 0.261 -1 ERNCQFCHC 9 18 627.2337959948397 1252.4530390564794 2 627.2342529296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C) _ERNC(Carbamidomethyl (C))QFC(Carbamidomethyl (C))HC_ ENSG00000155890|ENST00000286349|TRIM42;nc|ENSG00000155890|Q8IWZ5-2|TRIM42 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91958.3 NaN 4040 2072 6106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6116 36.094 NaN 766170 35 0 58686 0.327 + 8928 HPDLLSDTHL 10 77 574.2907481779872 1146.5669434227743 2 574.291015625 MULTI HCD FTMS 0 0 0 6115 323136.71875 0.07314272182463451 19 -0.4913215637207031 1 Unmodified _HPDLLSDTHL_ ENSG00000138002|ENST00000260570|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;nc|ENSG00000138002|Q9UG01-2|IFT172 37.97399986684836 0.1629881689457739 1 HEVT{I|L} 5 7 61.186 0 0 5.3364 0 0 549.2544422834 0 549.2544422834 0 25.449856549105192 0 0 0 1.4247425010840047 0 1.3494850021680094 0 HEVT{I|L} 5.3364 - 453 NaN NaN 200906.5 NaN 4041 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6117 36.098 NaN 503070 35 0 46163 0.261 + 80 ADKMDMSL 8 58 492.7044437294587 983.3943345257175 2 492.70452880859375 MULTI HCD FTMS 0 0 0 6115 303675.21875 1 0 0 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 96.36657018975838 0.034171934163802625 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 61.419 0 0 6.2457 0 0 228.0746784894547 0 228.0746784894547 0 31.276814821380086 0 0 0 1.6237125054200234 0 0.7302046884880937 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6.2457 + + 134 NaN NaN 157460.2 NaN 4042 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6118 36.101 NaN 233580 35 0 52942 0.261 + 2612 DVAEVDTVR 9 40 502.25651525013734 1002.4984775670747 2 502.2564697265625 MULTI HCD FTMS 0 0 0 6115 124052.015625 0.44691727672653275 4 -0.10612869262695312 3 Unmodified _DVAEVDTVR_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 78.06048673739656 0.006479972202176041 1 [DV]AEVDTVR 9 0 + 99.351 0 0 9.9104 9.9104 98.607 0 0 0 4.4897000433601875 4.4897000433601875 4.4897000433601875 51.99092531119419 0 3.079689690656103 2 0.7742275032520141 0 + + [DV]AEVDTVR;{[CP]|[EA]}[DV]VDTVR;[DV]A[VS]EEVR;[VS]{[RE]|[WV]}EEV[VG] 9.9104;4.7242;4.3515;0.089103 +;-;-;- + 189 + NaN NaN 111067.2 NaN 4043 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6119 36.105 NaN 135650 35 0 14568 0.261 + 27743 TATKIEITM 9 35 512.2732761611027 1022.5319993890054 2 512.2734375 MULTI HCD FTMS 0 0 0 6115 68113.2578125 0.1876802374547068 7 -0.18256759643554688 4 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 47.594388314883695 0.03493607795751234 1 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 52.157 0 0 5.1008 5.1008 91.312 0 0 0 33.969771685254386 11.483259264971153 11.483259264971153 52.15735931149851 0 1.805462187404089 0 0 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 5.1008 + + 32 + NaN NaN 100639 NaN 4044 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6120 36.108 NaN 237290 35 0 32473 0.261 + 28483 TPPPDDPRL 9 41 504.2616039523 1006.5086549714 2 504.26165771484375 MULTI HCD FTMS 0 0 0 6115 51517.64453125 0.4896262554719752 19 -0.4913215637207031 5 Unmodified _TPPPDDPRL_ ENSG00000110025|ENST00000377244|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;nc|ENSG00000110025|Q9NRS6-2|SNX15 3.5964929083625545 0.32375295897743744 1 W 1 9 2.2185 0 0 0.22041 0 0 582.3495190844844 235.06492029361564 817.4144393781 0 0 0 0 0 0 0 0 0 W 0.22041 - 6 + NaN NaN 117086.3 NaN 4045 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6121 36.111 NaN 74714 35 0 5186.7 0.261 + -1 MLCAAASYRT 10 37 551.7545369238668 1101.4945209145335 2 551.7549438476562 MULTI HCD FTMS 0 0 0 6115 17100.232421875 0.17019301653613245 25 -0.6478233337402344 6 Oxidation (M) _M(Oxidation (M))LCAAASYRT_ REV__ENST00000331450.9_1_15:99791827-99796202:+|nuORF;REV__ENST00000558861.1_2_15:99792175-99796202:+|nuORF 2.9952420565917617 0.4594494122822477 1 E 1 -1 7.034 0 0 0.63859 0 0 576.2409941584773 393.1895846002563 969.4305787587336 0 0 0 0 0 0.3054621874040891 0 0 0 E 0.63859 - 12 + NaN NaN 107054.5 NaN 4046 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6122 36.115 NaN 77619 35 0 8995.7 0.261 + -1 HLFCMPGM 8 27 476.1984905395241 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 6115 28213.943359375 0.931844068341971 -3 0.0796661376953125 7 Oxidation (M) _HLFCMPGM(Oxidation (M))_ REV__ENST00000233575.6_1_2:27594154-27595553:+|nuORF 2.8892196856762586 0.38822285293237185 1 D 1 -1 3.9794 0 0 0.41872 0 0 426.2210644757294 406.11029993228755 832.331364408017 0 0 0 0 0 0 0 0 0 D 0.41872 - 3 + NaN NaN 98959.1 NaN 4047 2073 6115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6124 36.12 NaN 511320 35 0 61844 0.327 + 13360 KYMTAVVKL 9 72 534.8099111520801 1067.60526937096 2 534.8099975585938 MULTI HCD FTMS 0 0 0 6123 222137.59375 0.8037942864638222 -2 0.056438446044921875 1 Oxidation (M) _KYM(Oxidation (M))TAVVKL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 57.24910588100465 0.021429789259086996 1 VVK{I|L} 4 5 34.412 0 0 3.2233 0 0 610.2806263654312 0 610.2806263654312 0 7.825834421237516 0 0 0 1 0 0 0 + VVK{I|L} 3.2233 + + 107 NaN NaN 159426.7 NaN 4048 2074 6123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6125 36.124 NaN 197690 35 0 19763 0.261 + 1525 AYVHMVTHF 9 54 560.7657570063983 1119.5169610795965 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6123 80760.171875 0.0822686498384376 -36 0.9551620483398438 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 85.35673624503755 0.00464763827098139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 94.123 0 0 8.4074 8.4074 94.968 0 0 0 18.57840941039747 16.478174818886373 16.478174818886373 18.57840941039747 0 2.7302046884880937 2 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}V[PA]CN;{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 8.4074;6.7479;6.3327;3.1174 +;-;-;- + 312 NaN NaN 107533.3 NaN 4049 2074 6123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6126 36.128 NaN 81715 35 0 22355 0.261 -1 IFAKMEKLM 9 30 563.8037964551831 1125.5930399771662 2 563.8038940429688 MULTI HCD FTMS 0 0 0 6123 57118.59375 0.603375253030089 3 -0.07961273193359375 3 Oxidation (M) _IFAKMEKLM(Oxidation (M))_ ENSG00000127083|ENST00000375550|OMD 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 87980.2 NaN 4050 2074 6123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6127 36.131 NaN 16082 35 0 5116.5 0.261 + 9577 HRRWSHYV 8 15 570.7939741990084 1139.5733954648167 2 570.7935180664062 MULTI HCD FTMS 0 0 0 6123 3086.40576171875 0.11293326742270926 15 -0.3886604309082031 4 Unmodified _HRRWSHYV_ REV__ENSG00000099991|ENST00000263119|CABIN1;REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1 0.6903765706972694 0.5409681170271811 1 V 1 -1 5.4846 0 0 0.48128 0 0 750.1360613357136 287.35447107486567 1037.4905324105794 0 0 0 0 0 0 0 0 0 V 0.48128 + + 1 + NaN NaN 95652 NaN 4051 2074 6123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6128 36.135 NaN 13798 35 0 4412.9 0.261 + 22158 QKLYDRHSS 9 14 567.2892456054688 NaN 0 567.2892456054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QKLYDRHSS_ ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.N568Tfs*13|1|0.44|ENSG00000167306|chr18:49953309-49953309|T/-|frameshift_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79457 NaN 4052 2074 6123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6130 36.14 NaN 174300 35 0 13081 0.327 + -1 KYMIEKIKF 9 47 405.89830317500696 1214.6730801252208 3 405.8985290527344 MULTI HCD FTMS 0 0 0 6129 64719.00390625 0.6613782032985909 4 -0.10629653930664062 1 Oxidation (M) _KYM(Oxidation (M))IEKIKF_ REV__ENSG00000059588|ENST00000040877|TARBP1 7.101721422024254 0.29718071671418667 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.8103 0 0 1049.593991845727 0 1049.593991845727 0 12.055912674110017 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8103 + + 7 + NaN NaN 103916 NaN 4053 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6131 36.144 NaN 101340 35 0 25999 0.261 + 9432 HPVGTDEEPL 10 38 547.2619345027894 1092.5093160723786 2 547.2622680664062 MULTI HCD FTMS 0 0 0 6129 37585.65625 0.5113976300991062 5 -0.13616180419921875 2 Unmodified _HPVGTDEEPL_ ENSG00000115414|ENST00000354785|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1 10.073929032068715 0.4168838835836452 1 TEE[{I|L}P] 5 5 27.135 0 0 2.4837 0 0 505.23640639472814 0 505.23640639472814 0 20.145228064085998 0 0 0 0.5 0 0.3807196863200844 0 TEE[{I|L}P] 2.4837 - 16 NaN NaN 90805.4 NaN 4054 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6132 36.148 NaN 92163 35 0 15193 0.261 -1 SADPSGAFRM 10 23 527.7348642142617 1053.4551754953234 2 527.7349853515625 MULTI HCD FTMS 0 0 0 6129 10654.7431640625 0.2035876234657768 13 -0.3388557434082031 3 Oxidation (M) _SADPSGAFRM(Oxidation (M))_ ENSG00000196878|ENST00000356082|LAMB3 8.155526934196011 0.43213520406898465 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6128 0 0 888.4095039638765 0 888.4095039638765 0 1.5321251377534377 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6128 + + 19 + NaN NaN 94717 NaN 4055 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6133 36.151 NaN 172520 35 0 20742 0.261 + 32551 WICWFAAL 8 48 505.25155305141357 1008.4885531696272 2 505.2424621582031 MULTI HCD FTMS 0 0 0 6129 12672.083984375 0.056258071356671886 15 -0.3986091613769531 4 Unmodified _WICWFAAL_ ENSG00000140323|ENST00000267889|DISP2 6.354104778181461 0.5325651638111438 1 AS[EP] 4 8 15.802 0 0 1.5669 0 0 606.314256736525 0 606.314256736525 0 12.307131330965717 0 0 0 0 0 0.5 0 AS[EP] 1.5669 - 34 NaN NaN 114243.3 NaN 4056 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6134 36.155 NaN 53398 35 0 6508.9 0.261 + 21983 QETSFTKEAY 10 26 602.2801022709209 1202.5456516086417 2 602.28076171875 MULTI HCD FTMS 0 0 0 6129 31933.65234375 0.19100093558745332 -5 0.12607192993164062 5 Unmodified _QETSFTKEAY_ ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;TPT1-KRT17|1|fusion 16.565877749689598 0.3561603856738253 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS{M(Oxidation (M))|F}T 6 4 25.067 0 0 2.0845 0 0 0 506.22544275455317 506.22544275455317 7.107952948012652 0 0 0 0 0.3807196863200844 0 0 0 + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS{M(Oxidation (M))|F}T 2.0845 + + 26 + NaN NaN 104127.3 NaN 4057 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6135 36.158 NaN 22084 35 0 4017.9 0.261 + 12345 KNCKPAPYHL 10 18 585.8073470437934 1169.6001411543866 2 585.8076782226562 MULTI HCD FTMS 0 0 0 6129 13636.0458984375 0.3635380285685632 8 -0.20264434814453125 6 Unmodified _KNCKPAPYHL_ REV__ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;REV__ENSG00000143322|ENST00000502732|ABL2;REV__ENST00000504324.1_1_1:179086401-179112191:-|nuORF;REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF;REV__nc|ENSG00000143322|P42684-10|ABL2;REV__nc|ENSG00000143322|P42684-2|ABL2;REV__nc|ENSG00000143322|P42684-3|ABL2;REV__nc|ENSG00000143322|P42684-4|ABL2;REV__nc|ENSG00000143322|P42684-5|ABL2;REV__nc|ENSG00000143322|P42684-6|ABL2;REV__nc|ENSG00000143322|P42684-7|ABL2;REV__nc|ENSG00000143322|P42684-8|ABL2 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105930.1 NaN 4058 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6136 36.161 NaN 59939 35 0 16374 0.262 + 14638 LGAPGEKGLP 10 27 469.76883015371357 937.5231073742272 2 469.76885986328125 MULTI HCD FTMS 0 0 0 6129 24638.955078125 0.6943974576372879 -2 0.046405792236328125 7 Unmodified _LGAPGEKGLP_ REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant;REV__ENSG00000080573|ENST00000264828|COL5A3 4.897010918128616 0.4493830473644964 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102685.1 NaN 4059 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6137 36.165 NaN 32230 35 0 5106.3 0.261 -1 KQTMGFEVPGV 11 24 604.8024119161821 1207.5902708991641 2 604.8032836914062 MULTI HCD FTMS 0 0 0 6129 2837.95947265625 0.18351786240346366 3 -0.0796966552734375 8 Oxidation (M) _KQTM(Oxidation (M))GFEVPGV_ ENSG00000112339|ENST00000367837|HBS1L;nc|ENSG00000112339|Q9Y450-4|HBS1L 2.9952420565917617 0.40578455234410343 1 S 1 -1 6.9897 0 0 0.57881 0 0 621.2970712915454 496.24006067447505 1117.5371319660205 0 0 0 0 0 0 0 0 0 S 0.57881 - 3 + NaN NaN 107624.2 NaN 4060 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6138 36.168 NaN 17026 35 0 3993.7 0.261 + 1646 CAVLEQARSSV 11 19 581.7999167580276 NaN 0 581.7996215820312 PEAK HCD FTMS 0 0 0 6129 11713.560546875 0.9426608298493133 -1 0.01988983154296875 9 Unmodified _CAVLEQARSSV_ REV__ENSG00000198753|ENST00000361971|PLXNB3;REV__nc|ENSG00000198753|Q9ULL4-2|PLXNB3;REV__PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant;REV__PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant 1.0714618166137932 0.3390807148598227 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93498.8 NaN 4061 2075 6129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6140 36.173 NaN 720080 35 0 196650 0.327 + 15382 LPDGDHDL 8 62 441.20370656745365 880.3928602017073 2 441.2037658691406 MULTI HCD FTMS 0 0 0 6139 497587.40625 0.5106692524057053 6 -0.15287399291992188 1 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 74.42276476219924 0.02458962149020947 1 {I|L}PD[DG]HD{I|L} 8 0 + 83.383 0 0 9.4712 9.4712 96.467 0 0 0 67.89381281052492 13.399480616943507 13.399480616943507 20.185690803236298 0 2.1549471895720984 1.6989700043360187 0.75 0 + + {I|L}PD[DG]HD{I|L};[{I|L}P]D[DG]HD{I|L};[{I|L}P]D[DG]HVE;[DP]{I|L}[DG]HD{I|L};[DP]{I|L}[DG]HVE;[DP]D{[VA]|[{I|L}G]}HD{I|L};[DP]D{[VA]|[{I|L}G]}HVE 9.4712;7.1784;6.5814;3.9968;3.3998;2.8729;2.276 +;+;-;-;-;-;- + 238 + NaN NaN 186757.7 NaN 4062 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6141 36.178 NaN 229790 35 0 28340 0.261 -1 RYVRKFVLM 9 56 409.9057375497935 1226.6953832495806 3 409.9059143066406 MULTI HCD FTMS 0 0 0 6139 55755.3671875 0.41041119173754337 22 -0.5682373046875 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 1 {I|L}{M(Oxidation (M))|F} 2 -1 28.271 0 0 2.3047 0 0 948.5682325166115 0 948.5682325166115 0 12.909393809954892 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3047 + + 41 NaN NaN 113384.9 NaN 4063 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6142 36.181 NaN 180760 35 0 15970 0.261 + 754 ASDCPGESTL 10 46 490.20553157981306 978.3965102264261 2 490.2056884765625 MULTI HCD FTMS 0 0 0 6139 65840.9453125 1 0 0 3 Unmodified _ASDCPGESTL_ nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B 13.042465956692817 0.38911719078024076 1 {M(Oxidation (M))|F}T{I|L} 3 8 28.288 0 0 2.8913 0 0 599.2178822248062 0 599.2178822248062 0 7.099009323677095 0 0 0 0.6861818737241735 0 0 0 {M(Oxidation (M))|F}T{I|L} 2.8913 - 62 NaN NaN 108578.5 NaN 4064 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6143 36.184 NaN 72551 35 0 8141 0.261 -1 LPQHPDVEM 9 33 541.2516614215622 1080.4887699099243 2 541.25244140625 MULTI HCD FTMS 0 0 0 6139 38436.1796875 0.5930861381123252 7 -0.169464111328125 4 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 15.248480904072842 0.22861284681709862 1 VE{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.4246 0 0 687.3342152326187 0 687.3342152326187 0 10.713337517843655 0 0 0 0 0 0 0 VE{M(Oxidation (M))|F} 2.4246 + + 10 NaN NaN 108996.1 NaN 4065 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6144 36.188 NaN 159940 35 0 16001 0.261 -1 RYQVSSLC 8 51 506.7461568628082 NaN 0 506.756591796875 PEAK HCD FTMS 0 0 0 6139 2298.965576171875 0.4975690533934284 -3 0.07958602905273438 5 Carbamidomethyl (C) _RYQVSSLC(Carbamidomethyl (C))_ ENSG00000121741|ENST00000610343|ZMYM2 19.438996006549623 0.38500361301801034 1 {M(Oxidation (M))|F}SSVSVS 7 -1 35.323 0 0 3.4922 0 0 144.03372594002332 171.08872400455314 315.1224499445765 0 0 0 0 0 0 0 0.3252574989159953 0 {M(Oxidation (M))|F}SSVSVS 3.4922 - 47 + NaN NaN 109153.8 NaN 4066 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6145 36.191 NaN 59582 35 0 13246 0.261 + 33967 YLTIKEGKF 9 24 549.8127904128959 NaN 0 549.8011474609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YLTIKEGKF_ tr|U7SVQ4|U7SVQ4_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01304PE=3SV=1 2.0597508629832335 0.2852655770354268 1 V{M(Oxidation (M))|F}{I|L} 3 8 16.198 0 0 1.4757 0 0 128.1183653943479 607.2487276666624 735.3670930610103 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F}{I|L} 1.4757 - 6 + NaN NaN 107977.5 NaN 4067 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6146 36.194 NaN 66057 35 0 8638.8 0.262 -1 MRLGCPIP 8 37 451.7322825826573 901.4500122321147 2 451.73223876953125 MULTI HCD FTMS 0 0 0 6139 14074.8544921875 0.6029279842332167 1 -0.02654266357421875 7 Oxidation (M) _M(Oxidation (M))RLGCPIP_ ENST00000568032.1_1_16:19098205-19098280:+|nuORF 6.354104778181461 0.5325651638111438 1 P{[{M(Oxidation (M))|F}C]|[YS]}P[{I|L}P] 6 -1 16.171 0 0 1.7939 0 0 229.1140880151209 0 229.1140880151209 0 11.566818653688532 0 0 0 0 0 0.3494850021680094 0 P{[{M(Oxidation (M))|F}C]|[YS]}P[{I|L}P] 1.7939 - 35 + NaN NaN 87923.6 NaN 4068 2076 6139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6148 36.2 NaN 428650 35 0 126780 0.327 -1 RYLEKPMEI 9 54 597.8130841336915 1193.611615334183 2 597.813232421875 MULTI HCD FTMS 0 0 0 6147 201689.859375 0.4235837085862183 12 -0.3090476989746094 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 28.494509381512117 0.11816142465008336 1 [YR]{I|L}EKE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 9 -1 + 50.908 0 0 4.265 4.265 87.474 0 0 0 5.954839578393347 38.20493438421167 5.954839578393347 15.740312677277181 0 1 0 0.805462187404089 0 [YR]{I|L}EKE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[YR]{I|L}EA[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 4.265;2.9463;2.6558 -;-;- 205 NaN NaN 147389.9 NaN 4069 2077 6147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6149 36.204 NaN 191960 35 0 20469 0.262 + 3195 EDASRWTV 8 54 482.2302036831377 962.4458544330754 2 482.74603271484375 MULTI HCD FTMS 0 0 0 6147 5673.0419921875 0.5316000404474661 6 -0.14292144775390625 2 Unmodified _EDASRWTV_ REV__ENSG00000113971|ENST00000337331|NPHP3;REV__ENST00000471702.2_2_3:132363653-132416205:-|nuORF;REV__ENST00000474871.5_1_3:132405102-132413706:-|nuORF;REV__nc|ENSG00000113971|Q7Z494-2|NPHP3 3.944395688203298 0.5361403129012058 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.866 0 0 696.3523893180391 0 696.3523893180391 0 3.2660625688767198 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.866 - 46 + NaN NaN 109118.6 NaN 4070 2077 6147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6150 36.208 NaN 273090 35 0 31785 0.261 + 7386 FVHQGETEL 9 57 530.2591371419664 1058.5037213507328 2 530.2592163085938 MULTI HCD FTMS 0 0 0 6147 119665.4765625 0.4355678569563946 -3 0.07961273193359375 3 Unmodified _FVHQGETEL_ ENSG00000105447|ENST00000253237|GRWD1 69.10491478415734 0.009377850133389008 1 TWQHD{I|L} 6 7 47.44 0 0 4.4818 0 0 260.13643080879064 0 260.13643080879064 0 33.94016261540408 0 0 0 1.8182503180159344 0 1.110924374808178 0.4247425010840047 TWQHD{I|L} 4.4818 - 422 NaN NaN 126967.3 NaN 4071 2077 6147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6151 36.211 NaN 141810 35 0 12255 0.261 + 25169 SALEKEEAL 9 48 495.2612238334894 988.5078947337788 2 495.2613220214844 MULTI HCD FTMS 0 0 0 6147 64227.453125 0.2094843174585443 7 -0.16618728637695312 4 Unmodified _SALEKEEAL_ ENSG00000107960|ENST00000224950|STN1 10.150570793230772 0.27265765907388223 1 {[SA]|[TG]}{I|L}E{M(Oxidation (M))|F} 5 5 16.184 0 0 1.6373 0 0 0 438.2360933893188 438.2360933893188 1.4916623986031396 0 0 0 0 0.3252574989159953 0 0 0 {[SA]|[TG]}{I|L}E{M(Oxidation (M))|F} 1.6373 - 60 + NaN NaN 106511.6 NaN 4072 2077 6147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6152 36.214 NaN 79028 35 0 10662 0.261 + 13903 KYQEVTNNL 9 30 554.785147411307 1107.5557418894139 2 554.7854614257812 MULTI HCD FTMS 0 0 0 6147 38480.953125 0.018480377481655902 29 -0.754302978515625 5 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 21.590151480376914 0.17382222009858564 1 TNN{I|L} 4 5 41.938 0 0 3.7866 0 0 647.3278189208786 0 647.3278189208786 0 41.938200260161125 0 0 0 1 0 0 0 + TNN{I|L} 3.7866 + + 22 NaN NaN 96923.7 NaN 4073 2077 6147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6154 36.22 NaN 122930 35 0 27305 0.327 + 30998 VSEVSVPPK 9 37 471.27067558899074 NaN 0 471.2560729980469 PEAK HCD FTMS 0 0 0 6153 2576.8349609375 1 0 0 1 Unmodified _VSEVSVPPK_ ENSG00000147852|ENST00000382100|VLDLR;nc|ENSG00000147852|P98155-2|VLDLR 7.910154910731844 0.25691533546754686 1 S{I|L}DA 4 8 18.928 0 0 2.0125 0 0 186.12807004258065 365.1939320008337 551.3220020434144 0 0 0 0 0 0 0 0 0 S{I|L}DA 2.0125 - 30 + NaN NaN 120971.7 NaN 4074 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6155 36.224 NaN 80693 35 0 12971 0.261 + 20044 NYIKRNWRI 9 37 421.5752339534141 1261.7038724604424 3 421.575439453125 MULTI HCD FTMS 0 0 0 6153 30902.66015625 0.6614613455429157 6 -0.14621353149414062 2 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 7.608950283845883 0.29333554423920943 1 NY 2 7 41.766 0 0 3.3103 0 0 0 981.5751136048962 981.5751136048962 41.76599703664159 0 0 0 0 0.3807196863200844 2 0 0 + NY 3.3103 + + 4 + NaN NaN 86342.4 NaN 4075 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6156 36.228 NaN 77506 35 0 11851 0.261 -1 HSLPQEPVM 9 25 527.2553013462582 1052.4960497593163 2 527.25537109375 MULTI HCD FTMS 0 0 0 6153 20670.64453125 0.15618938151226294 29 -0.7541656494140625 3 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 20.41453444215458 0.18397929046831515 1 E[VP]{M(Oxidation (M))|F} 4 -1 30.445 0 0 2.8927 0 0 562.2870960919937 0 562.2870960919937 0 30.445312593723983 0 0 0 1.4247425010840047 0 0 0 E[VP]{M(Oxidation (M))|F} 2.8927 + + 16 NaN NaN 92901.8 NaN 4076 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6157 36.231 NaN 78330 35 0 8800.5 0.261 + 12527 KRYVNDKFG 9 31 563.8037964551831 1125.5930399771662 2 564.7937622070312 MULTI HCD FTMS 0 0 0 6153 2533.57470703125 0.09476751466160613 7 -0.17282485961914062 4 Unmodified _KRYVNDKFG_ REV__ENSG00000129167|ENST00000682019|TPH1;REV__nc|ENSG00000129167|P17752-2|TPH1 2.0597508629832335 0.3354026079994024 1 PV 2 -1 10.969 0 0 0.97452 0 0 135.07924423959838 791.3684176080686 926.447661847667 0 0 0 0 0 0 0 0 0 PV 0.97452 - 8 + NaN NaN 90916.7 NaN 4077 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6158 36.234 NaN 68886 35 0 6410.7 0.264 + 3006 EAALHALVQRT 11 37 403.56188671925 1207.66383075795 3 403.5623474121094 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EAALHALVQRT_ A1CF|p.R21H|1|0.36|ENSG00000148584|chr10:50859879-50859879|C/T|missense_variant 2.735195868890462 0.4069250265843076 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93564.5 NaN 4078 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6159 36.238 NaN 18620 35 0 5496.2 0.261 -1 EEWNEDLDGM 10 13 627.2337959948397 1252.4530390564794 2 627.735595703125 MULTI HCD FTMS 0 0 0 6153 5175.8466796875 0.4675975740285827 1 -0.026599884033203125 6 Oxidation (M) _EEWNEDLDGM(Oxidation (M))_ ENSG00000177731|ENST00000327031|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII 0.4007161486938917 0.47318265037741464 1 D 1 -1 4.6041 0 0 0.36761 0 0 926.8497503375326 207.5514315240844 1134.401181861617 0 0 0 0 0 0 0 0 0 D 0.36761 + + 1 + NaN NaN 82529.9 NaN 4079 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6160 36.241 NaN 15328 35 0 4641.8 0.261 + 7305 FTQQGFSPSPI 11 6 604.8024119161821 1207.5902708991641 2 604.8026123046875 MULTI HCD FTMS 0 0 0 6153 8661.859375 0.5601228390522347 6 -0.14621353149414062 7 Unmodified _FTQQGFSPSPI_ REV__ENSG00000184384|ENST00000524717|MAML2 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80524.7 NaN 4080 2078 6153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6162 36.246 NaN 474970 35 0 38414 0.327 + 9200 HPLMHLCPSL 10 61 574.2907481779872 1146.5669434227743 2 574.2909545898438 MULTI HCD FTMS 0 0 0 6161 219639.4375 0.049715879832309205 25 -0.6580238342285156 1 Unmodified _HPLMHLCPSL_ REV__ENSG00000065427|ENST00000302445|KARS1;REV__ENST00000566560.5_1_16:75668010-75682538:-|nuORF;REV__nc|ENSG00000065427|Q15046-2|KARS1 32.30548876998284 0.21217886106551395 1 HEVT{I|L} 5 -1 59.24 0 0 5.1667 0 0 549.253221580275 0 549.253221580275 0 21.479400086720375 0 0 0 1.2302046884880937 0 1.3494850021680094 0 HEVT{I|L} 5.1667 - 316 NaN NaN 155878.2 NaN 4081 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6163 36.251 NaN 172080 35 0 18281 0.261 + 81 ADKMDMSL 8 51 492.7044437294587 983.3943345257175 2 492.704345703125 MULTI HCD FTMS 0 0 0 6161 95674.0625 0.31505390164471564 6 -0.1462249755859375 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 49.55428908609986 0.13052543569786648 1 {M(Oxidation (M))|F}S{I|L} 3 5 33.377 0 0 3.394 0 0 618.2330189435562 0 618.2330189435562 0 11.990356438445517 0 0 0 0.7887254899964358 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.394 + + 48 NaN NaN 114610.5 NaN 4082 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6164 36.254 NaN 150390 35 0 32756 0.261 + 27758 TATLHEPIM 9 33 514.7577109277235 1027.5008689222468 2 514.7578125 MULTI HCD FTMS 0 0 0 6161 89471.6796875 0.5098969393650343 -4 0.10629653930664062 3 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 48.345845343767074 0.03388484103555672 1 P{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.5229 0 0 652.3173942704703 0 652.3173942704703 0 21.49288766643714 0 0 0 1 0 0 0 + P{I|L}{M(Oxidation (M))|F} 3.5229 + + 47 + NaN NaN 115913.8 NaN 4083 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6165 36.258 NaN 91015 35 0 15172 0.261 -1 MPVHAAVQM 9 33 500.24126626379393 998.4679795943879 2 500.2412414550781 MULTI HCD FTMS 0 0 0 6161 35358.76171875 0.7831305798589026 -4 0.10629653930664062 4 Oxidation (M) _M(Oxidation (M))PVHAAVQM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 16.942295170755138 0.21397866736869717 1 VQM 3 -1 33.333 0 0 3.3384 0 0 622.2896560142184 0 622.2896560142184 0 13.868617341927688 0 0 0 0.7134679910804405 0 0 0 VQM 3.3384 + + 38 NaN NaN 96713.2 NaN 4084 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6166 36.261 NaN 73408 35 0 20287 0.261 + 15851 LPKNNPPTI 9 28 497.2899451788328 992.5653374244656 2 497.29010009765625 MULTI HCD FTMS 0 0 0 6161 47771.59765625 1 0 0 5 Unmodified _LPKNNPPTI_ ENSG00000100284|ENST00000449058|TOM1;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;nc|ENSG00000100284|O60784-2|TOM1;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1 8.745405648335112 0.2847203663274469 1 {I|L}P 2 7 20.969 0 0 2.1126 0 0 0 779.4032686822874 779.4032686822874 9.731975075880328 0 0 0 0 0 0 0 0 + {I|L}P 2.1126 + + 3 + NaN NaN 97415.4 NaN 4085 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6167 36.264 NaN 83596 35 0 11843 0.261 + 6000 FPDRIDECP 9 37 546.24513017875 1090.4757074242998 2 546.2456665039062 MULTI HCD FTMS 0 0 0 6161 24046.982421875 0.3844393377606109 -17 0.41823577880859375 6 Unmodified _FPDRIDECP_ nc|ENSG00000061938|Q07912-2|TNK2 13.042465956692817 0.2476723265019929 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DREEV{[CP]|[EA]} 9 3 + 27.54 0 0 2.5255 2.5255 87.456 0 0 0 20.550077918659685 4.762036441594194 4.762036441594194 27.539777962019873 0 0.8935078169319297 0 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DREEV{[CP]|[EA]} 2.5255 - 58 + NaN NaN 89819.9 NaN 4086 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6168 36.267 NaN 32732 35 0 4745.9 0.261 -1 SAAVYEATM 9 25 479.713031581408 NaN 0 479.7131652832031 PEAK HCD FTMS 0 0 0 6161 5664.92333984375 0.46394918800835205 1 -0.029865264892578125 7 Oxidation (M) _SAAVYEATM(Oxidation (M))_ ENSG00000158828|ENST00000321556|PINK1 10.073929032068715 0.24642998803896465 1 E 1 -1 6.9897 0 0 0.73006 0 0 337.1305176532473 488.2168367975219 825.3473544507692 0 0 0 0 0 0.3494850021680094 0 0 0 E 0.73006 + + 1 + NaN NaN 89338 NaN 4087 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6169 36.271 NaN 86038 35 0 22896 0.261 + 28991 TYDNVHQQF 9 34 576.2593389890973 1150.5041250449945 2 577.2627563476562 MULTI HCD FTMS 0 0 0 6161 10777.1875 0.5512203844613136 -5 0.12618637084960938 8 Unmodified _TYDNVHQQF_ ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;nc|ENSG00000138639|Q8N264-3|ARHGAP24 9.38312468134398 0.279288223203164 1 S 1 9 0.48455 0 0 0.042116 0 0 662.457080222532 397.9907320611938 1060.4478122837259 0 0 0 0 0 0 0 0 0 S 0.042116 - 11 + NaN NaN 103389.2 NaN 4088 2079 6161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6171 36.276 NaN 204180 35 0 22731 0.327 + 1526 AYVHMVTHF 9 55 560.7657570063983 1119.5169610795965 2 560.765869140625 MULTI HCD FTMS 0 0 0 6170 79818.984375 0.08130988237828829 -30 0.7789039611816406 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 81.61307344734483 0.005330412723537057 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 90.06 0 0 8.0445 8.0445 92.349 0 0 0 9.534021960761265 9.534021960761265 9.534021960761265 9.534021960761265 0 2.6237125054200234 1.6989700043360187 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}V[PA]CN;{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}V[PA]CN 8.0445;7.1929;7.1308;5.0497;4.3394;3.4256;2.7328;2.5312;2.1962 +;+;-;-;-;-;-;-;- + 282 + NaN NaN 130297.7 NaN 4089 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6172 36.281 NaN 188400 35 0 24537 0.261 -1 RYMEVSGNL 9 41 542.7569651272369 1083.4993773212736 2 542.75830078125 MULTI HCD FTMS 0 0 0 6170 92392.375 0.7460089968520102 -5 0.13616180419921875 2 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 24.881564428377168 0.14538514251145815 1 EVSGN{I|L} 6 -1 55.706 0 0 5.1413 0 0 466.19954152852813 0 466.19954152852813 0 46.49797211252192 0 0 0 1.1549471895720984 0 0 0 EVSGN{I|L} 5.1413 + + 114 NaN NaN 131284.2 NaN 4090 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6173 36.284 NaN 120440 35 0 22633 0.261 -1 ECAEEKIP 8 30 488.2265735452628 974.4385941573256 2 488.2265319824219 MULTI HCD FTMS 0 0 0 6170 44796.703125 0.7573493147771914 4 -0.08974838256835938 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))AEEKIP_ ENSG00000198911|ENST00000361204|SREBF2;ENST00000424354.5_1_22:42276758-42295397:+|nuORF 5.230669730166228 0.5342319408533849 1 Q 1 -1 2.4743 0 0 0.25392 0 0 401.11621974501935 442.2410291783792 843.3572489233986 0 0 0 0 0 0 0 0 0 Q 0.25392 - 3 + NaN NaN 111898.2 NaN 4091 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6174 36.287 NaN 159750 35 0 20128 0.261 -1 HPVLKEMEVQ 10 48 613.3160552948816 1224.6175576565631 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6170 69858 0.21488760642697216 -5 0.13616180419921875 4 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPVQV 5 -1 34.464 0 0 2.8143 0 0 0 661.2867525690061 661.2867525690061 5.752574989159953 0 0 0 0 0.5 0 0 0 HPVQV 2.8143 - 57 + NaN NaN 120466.8 NaN 4092 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6175 36.291 NaN 68938 35 0 8786 0.264 -1 FYQRCHLRE 9 27 436.8792929717086 NaN 0 436.8796081542969 PEAK HCD FTMS 0 0 0 6170 14038.337890625 0.5530552648300406 -47 1.2573165893554688 5 Carbamidomethyl (C) _FYQRC(Carbamidomethyl (C))HLRE_ ENSG00000126804|ENST00000683701|ZBTB1;nc|ENSG00000126804|Q9Y2K1-2|ZBTB1 0.8643753074506083 0.29105820015805195 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95523.7 NaN 4093 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6176 36.294 NaN 17361 35 0 4056.5 0.261 + 12205 KKRSVHPFH 9 17 568.327380676267 NaN 0 568.3272094726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KKRSVHPFH_ nc|ENSG00000146414|Q149N8-5|SHPRH 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92071.6 NaN 4094 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6177 36.297 NaN 42139 35 0 6466.9 0.262 + 678 APTTVPTGTL 10 24 479.26631037387267 956.5180678145454 2 479.26593017578125 MULTI HCD FTMS 0 0 0 6170 11979.208984375 0.49556425770500045 -3 0.07643890380859375 7 Unmodified _APTTVPTGTL_ REV__ENSG00000095539|ENST00000210633|SEMA4G;REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G;REV__nc|ENSG00000095539|Q9NTN9|SEMA4G 5.731851221503515 0.44496410492002586 1 AP 2 -1 20.969 0 0 2.1922 0 0 0 785.4052828424436 785.4052828424436 20.969100130080562 0 0 0 0 0 0 0 0 AP 2.1922 + + 4 + NaN NaN 96638.9 NaN 4095 2080 6170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6179 36.303 NaN 168840 35 0 15891 0.327 + 21984 QETSFTKEAY 10 53 602.2801022709209 1202.5456516086417 2 602.2802124023438 MULTI HCD FTMS 0 0 0 6178 133716.75 0.7997840046227048 1 -0.02327728271484375 1 Unmodified _QETSFTKEAY_ ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;TPT1-KRT17|1|fusion 47.7319792270244 0.08603782309361356 1 AEK[HK][DN]Y 8 7 42.599 0 0 3.5424 0 0 199.0873888262534 0 199.0873888262534 0 8.697887582883936 0 0 0 0.4247425010840047 0 1.4802046884880937 0.9559771852360797 AEK[HK][DN]Y 3.5424 - 224 + NaN NaN 112858.1 NaN 4096 2081 6178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6180 36.307 NaN 117000 35 0 10710 0.264 + 12211 KKSTMLTFLF 10 48 405.89830317500696 1214.6730801252208 3 405.89837646484375 MULTI HCD FTMS 0 0 0 6178 55449.2734375 0.566648721810202 10 -0.25235748291015625 2 Unmodified _KKSTMLTFLF_ REV__ENSG00000100991|ENST00000252015|TRPC4AP;REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 5.731851221503515 0.44496410492002586 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5938850342036 0 1049.5938850342036 0 18.138181262758266 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 3 + NaN NaN 96325.8 NaN 4097 2081 6178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6181 36.311 NaN 51244 35 0 7611 0.261 + 20266 NYLQLLVHPNP 11 24 436.57476406878027 1306.7024628065408 3 436.57501220703125 MULTI HCD FTMS 0 0 0 6178 17711.76171875 0.9121970704627375 2 -0.039867401123046875 3 Unmodified _NYLQLLVHPNP_ ENSG00000125755|ENST00000245934|SYMPK 2.6312355333042263 0.4073809613003177 1 T 1 11 3.0989 0 0 0.23716 0 0 882.4857402497033 320.1414888971313 1202.6272291468347 0 0 0 0 0 0 0 0 0 T 0.23716 - 1 + NaN NaN 91921 NaN 4098 2081 6178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6182 36.314 NaN 31556 35 0 6019.2 0.261 -1 FDYLYCCR 8 22 570.2376084718717 1138.4606640105433 2 570.2371826171875 MULTI HCD FTMS 0 0 0 6178 18482.0546875 1 0 0 4 Carbamidomethyl (C) _FDYLYC(Carbamidomethyl (C))CR_ AHCYL2|p.N370Y|1|0.69|ENSG00000158467|chr7:129405179-129405179|A/T|missense_variant 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85220.8 NaN 4099 2081 6178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6183 36.317 NaN 20330 35 0 5740.3 0.261 + 21120 PPDLDIMEKL 10 14 585.8073470437934 1169.6001411543866 2 585.8080444335938 MULTI HCD FTMS 0 0 0 6178 8253.7158203125 0.22004469624331402 14 -0.3452110290527344 5 Unmodified _PPDLDIMEKL_ ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3 1.4819007175156935 0.4674597685733628 1 E[K{I|L}] 3 7 10.458 0 0 0.89412 0 0 781.3683949201187 0 781.3683949201187 0 10.45757490560675 0 0 0 0 0 0 0 + E[K{I|L}] 0.89412 + + 1 NaN NaN 91351.9 NaN 4100 2081 6178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6184 36.321 NaN 13330 35 0 4238.2 0.261 + 3598 EKKPYFSYF 9 9 604.8024119161821 1207.5902708991641 2 604.8031616210938 MULTI HCD FTMS 0 0 0 6178 7405.8740234375 0.4789040094143769 9 -0.23583221435546875 6 Unmodified _EKKPYFSYF_ NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant 0.45834013312273997 0.3475424938045562 1 K 1 8 6.9897 0 0 0.57881 0 0 902.2378671899829 174.23774133853752 1076.4756085285205 0 0 0 0 0 0 0 0 0 + K 0.57881 + + 1 + NaN NaN 85685.6 NaN 4101 2081 6178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6186 36.326 NaN 235080 35 0 60688 0.327 + 15383 LPDGDHDL 8 44 441.20370656745365 880.3928602017073 2 441.2037048339844 MULTI HCD FTMS 0 0 0 6185 143070.921875 0.14683233497713008 12 -0.3019905090332031 1 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 42.09456458481378 0.20402248593209013 1 {I|L}PD 3 5 55.93 0 0 6.3528 0 0 0 552.2068575494749 552.2068575494749 27.971062485323515 0 0 0 0 0.8494850021680094 1.6989700043360187 0.4247425010840047 0 + {I|L}PD 6.3528 + + 33 + NaN NaN 118228.4 NaN 4102 2082 6185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6187 36.33 NaN 34504 35 0 6070.9 0.261 + 14977 LLIAKTYYN 9 22 549.8127904128959 NaN 0 549.80078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLIAKTYYN_ ENST00000463418.5_1_2:158157328-158158798:+|nuORF 0.5247636613948944 0.2927039108006614 1 V 1 9 6.9897 0 0 0.63681 0 0 128.12013541387915 867.4020616698743 995.5221970837536 0 0 0 0 0 0 0 0 0 V 0.63681 - 1 + NaN NaN 101566.4 NaN 4103 2082 6185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6188 36.334 NaN 128660 35 0 11099 0.261 + 9161 HPIKQVDVL 9 45 524.8110253751746 1047.6074978171491 2 524.8111572265625 MULTI HCD FTMS 0 0 0 6185 41553.8203125 0.14864655867232013 -6 0.15287399291992188 3 Unmodified _HPIKQVDVL_ ENSG00000107960|ENST00000224950|STN1 21.536976647645854 0.1742816388551942 1 HP{I|L} 3 6 28.188 0 0 2.6907 0 0 0 697.3917940729124 697.3917940729124 2.269987279362624 0 0 0 0 0.5 0 0 0 + HP{I|L} 2.6907 + + 42 + NaN NaN 113285.1 NaN 4104 2082 6185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6189 36.337 NaN 20863 35 0 5102.7 0.261 + -1 PTMMCTDLDE 10 13 586.2192474496777 1170.4239419661553 2 586.2217407226562 MULTI HCD FTMS 0 0 0 6185 8922.369140625 0.9288074370421154 3 -0.06646728515625 4 Oxidation (M) _PTM(Oxidation (M))MCTDLDE_ REV__ENSG00000079691|ENST00000329474|CARMIL1;REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1 0 0.4753037046562868 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104913.1 NaN 4105 2082 6185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6191 36.343 NaN 358860 35 0 43444 0.327 + 7387 FVHQGETEL 9 69 530.2591371419664 1058.5037213507328 2 530.2589721679688 MULTI HCD FTMS 0 0 0 6190 186366.203125 0.6783504318545832 3 -0.073089599609375 1 Unmodified _FVHQGETEL_ ENSG00000105447|ENST00000253237|GRWD1 85.64151623876279 0.004640175941193596 1 [{M(Oxidation (M))|F}V]H{[QG]|[NA]}ETE{I|L} 9 0 + 56.418 0 0 5.33 5.33 84.163 0 0 0 3.65279269351241 39.251284189090825 3.65279269351241 4.771212547196626 0 1.6549471895720984 0 0.75 0.3494850021680094 + + [{M(Oxidation (M))|F}V]H{[QG]|[NA]}ETE{I|L};[{M(Oxidation (M))|F}V]HE{[QG]|[NA]}TE{I|L};[HV]{M(Oxidation (M))|F}{[QG]|[NA]}ETE{I|L};[HV]{M(Oxidation (M))|F}E{[QG]|[NA]}TE{I|L};[{M(Oxidation (M))|F}V]H[WQ]MV{I|L};{[QN]|[E{I|L}]|[KN]}[DG][WP]TE{I|L};[{M(Oxidation (M))|F}V]H[WQ]M{I|L}V;{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{[QG]|[NA]}TE{I|L};[HV]{M(Oxidation (M))|F}[WQ]MV{I|L};[{M(Oxidation (M))|F}V]H[WQ]{I|L}MV 5.33;4.8793;4.5367;4.0859;3.8015;3.7008;3.1412;3.0837;3.0082;2.6098 +;-;-;-;-;-;-;-;-;- + 753 NaN NaN 141355.4 NaN 4106 2083 6190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6192 36.347 NaN 300730 35 0 89807 0.261 -1 RYLEKPMEI 9 42 597.8130841336915 1193.611615334183 2 597.8131103515625 MULTI HCD FTMS 0 0 0 6190 136909.1875 0.287533054762813 18 -0.4819831848144531 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 24.990960013464015 0.14443998892849796 1 PKAP{[{M(Oxidation (M))|F}D]|MM}{I|L} 7 -1 28.486 0 0 2.3865 0 0 407.1744862287125 0 407.1744862287125 0 15.29840696594043 0 0 0 1.274227503252014 0 0.3252574989159953 0 PKAP{[{M(Oxidation (M))|F}D]|MM}{I|L} 2.3865 - 52 NaN NaN 127820.4 NaN 4107 2083 6190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6193 36.351 NaN 279900 35 0 43640 0.264 -1 FNWISKKRM 9 67 409.220592014787 NaN 0 409.2135009765625 PEAK HCD FTMS 0 0 0 6190 4831.1630859375 1 0 0 3 Oxidation (M) _FNWISKKRM(Oxidation (M))_ ENST00000393913.7_1_2:75719495-75719630:-|nuORF 7.608950283845883 0.2583749310551142 1 E 1 -1 9.2917 0 0 1.1381 0 0 522.337227875474 162.02314172916252 684.3603696046365 0 0 0 0 0 0 0 0.3807196863200844 0 E 1.1381 - 22 + NaN NaN 124348.7 NaN 4108 2083 6190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6194 36.354 NaN 86604 35 0 8021.2 0.261 + 10363 IMAVTMDLA 9 44 482.74589332675896 963.4772337203179 2 483.748046875 MULTI HCD FTMS 0 0 0 6190 38174.69140625 0.9765853651712116 -1 0.016590118408203125 4 Unmodified _IMAVTMDLA_ ENSG00000065268|ENST00000585809|WDR18;ENST00000591276.1_1_19:990686-991256:+|nuORF 2.0597508629832335 0.3354026079994024 1 V 1 8 3.9794 0 0 0.41302 0 0 182.07955040659857 679.3078707330686 861.3874211396671 0 0 0 0 0 0 0 0 0 + V 0.41302 + + 5 + NaN NaN 83034.9 NaN 4109 2083 6190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6195 36.357 NaN 60185 35 0 8848 0.261 + 13904 KYQEVTNNL 9 32 554.785147411307 1107.5557418894139 2 554.7852783203125 MULTI HCD FTMS 0 0 0 6190 27903.08984375 0.01340038619994704 35 -0.8928260803222656 5 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 15.248480904072842 0.22861284681709862 1 T 1 8 16.99 0 0 1.534 0 0 647.3276057583577 356.1566256158813 1003.484231374239 0 0 0 0 0 1 0 0 0 + T 1.534 + + 12 + NaN NaN 103126.5 NaN 4110 2083 6190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6196 36.361 NaN 12588 35 0 4494.1 0.261 + 1824 CRYQREEHI 9 8 617.2916259765625 NaN 0 617.2916259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _CRYQREEHI_ REV__ENSG00000085276|ENST00000651503|MECOM;REV__MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant;REV__nc|ENSG00000085276|Q03112-1|MECOM;REV__nc|ENSG00000085276|Q03112-4|MECOM;REV__nc|ENSG00000085276|Q03112-5|MECOM;REV__nc|ENSG00000085276|Q03112-6|MECOM;REV__nc|ENSG00000085276|Q03112-8|MECOM;REV__nc|ENSG00000085276|Q03112|MECOM 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105696.5 NaN 4111 2083 6190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6198 36.366 NaN 240360 35 0 56465 0.326 + 26568 SVSDLAPPR 9 47 471.2561451268262 940.4977373204524 2 471.2559814453125 MULTI HCD FTMS 0 0 0 6197 107217.671875 0.7796114446565744 2 -0.049823760986328125 1 Unmodified _SVSDLAPPR_ ENSG00000166295|ENST00000299381|ANAPC16 62.57269311338072 0.013982455292112035 1 [VS]S{I|L}DA 6 5 66.713 0 0 7.0934 0 0 0 365.19399619798975 365.19399619798975 61.22872192056825 0 0 0 0 1.4247425010840047 2 0.7059771852360797 0 [VS]S{I|L}DA 7.0934 - 52 + NaN NaN 124354.8 NaN 4112 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6199 36.37 NaN 613070 35 0 50751 0.261 + 9003 HPEKLATVL 9 78 504.2977957027317 1006.5810384722635 2 504.29791259765625 MULTI HCD FTMS 0 0 0 6197 263134.9375 0.119051859293595 -8 0.19272994995117188 2 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 82.5293158979368 0.005033931517079822 1 HPE 3 6 33.232 0 0 3.3015 0 0 0 640.4017428033811 640.4017428033811 -4.384249941294058 0 -4.384249941294058 0 0 0.5 0 0.5044321917401079 0 + HPE 3.3015 + + 161 + NaN NaN 168425 NaN 4113 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6200 36.374 NaN 393830 35 0 35354 0.261 + 18977 NAQKEIATL 9 60 494.2770292209345 986.539505508669 2 494.2772216796875 MULTI HCD FTMS 0 0 0 6197 190200.8125 0.18491092693011502 -5 0.1196136474609375 3 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 140.63315402491853 1.8728231636916273E-05 1 {[QG]|[NA]}QKE{I|L}AT{I|L} 9 0 + 94.623 0 0 9.5914 9.5914 93.501 0 0 0 4.189615513722202 4.189615513722202 4.189615513722202 9.208187539523749 0 2.548455006504028 1.5228787452803376 0.3252574989159953 1.0356668758921828 + + {[QG]|[NA]}QKE{I|L}AT{I|L};{[QG]|[NA]}[AG]KE{I|L}AT{I|L};{[QG]|[NA]}QVV[TA]AT{I|L};{[QG]|[NA]}QKE[TA]{I|L}{I|L};[{I|L}T]AAAQQAT{I|L};[{I|L}T]{[NV]|[RG]}QQAT{I|L};{[QG]|[NA]}QK[TA]E{I|L}{I|L};{[QG]|[NA]}[AG]KE[TA]{I|L}{I|L};[TA]{I|L}AAQQAT{I|L};{[QG]|[NA]}[AG]K[TA]E{I|L}{I|L} 9.5914;8.658;6.4227;5.7081;5.2397;5.0612;4.9465;4.7747;4.6114;4.0131 +;-;-;-;-;-;-;-;-;- + 772 NaN NaN 141684.7 NaN 4114 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6201 36.377 NaN 124780 35 0 14162 0.261 + -1 AMVRKIDDK 9 30 546.297643592037 1090.580734250874 2 546.2860107421875 MULTI HCD FTMS 0 0 0 6197 6142.3798828125 0.3312475998256602 10 -0.2621345520019531 4 Oxidation (M) _AM(Oxidation (M))VRKIDDK_ REV__ENSG00000110987|ENST00000261822|BCL7A;REV__ENST00000432926.2_1_12:122459901-122481985:+|nuORF;REV__nc|ENSG00000110987|Q4VC05-2|BCL7A 4.3292370932331545 0.3181982124262546 1 [DP]{M(Oxidation (M))|F}R[HV]AH 8 -1 19.385 0 0 1.7775 0 0 0 128.09599830048458 128.09599830048458 -4.291746928241121 0 -4.291746928241121 0 0 0 0 0 0 [DP]{M(Oxidation (M))|F}R[HV]AH 1.7775 - 209 NaN NaN 100149.6 NaN 4115 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6202 36.38 NaN 61856 35 0 8749.4 0.263 + 20045 NYIKRNWRI 9 34 421.5752339534141 1261.7038724604424 3 421.57537841796875 MULTI HCD FTMS 0 0 0 6197 16298.7890625 0.3488702554890236 12 -0.3157615661621094 5 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 4.897010918128616 0.31389406404703984 1 NY 2 7 37.959 0 0 3.0085 0 0 0 981.5734095435249 981.5734095435249 32.47425010840047 0 0 0 0 0 2 0 0 + NY 3.0085 + + 3 + NaN NaN 92365.4 NaN 4116 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6203 36.384 NaN 48163 35 0 8393.1 0.261 + 9475 HPVYQRSLE 9 25 564.7934901382033 1127.5724273432065 2 564.79345703125 MULTI HCD FTMS 0 0 0 6197 23540.7265625 0.7282485416572888 5 -0.14286041259765625 6 Unmodified _HPVYQRSLE_ MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant 2.9952420565917617 0.3283108881486655 1 HPV 3 6 26.198 0 0 2.3234 0 0 0 791.3695772760374 791.3695772760374 20.255762612236907 0 0 0 0 0 0 0 0 + HPV 2.3234 + + 6 + NaN NaN 86440.3 NaN 4117 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6204 36.387 NaN 67550 35 0 6727.1 0.262 + -1 HLFCMPGM 8 31 476.1984905395241 NaN 0 476.19879150390625 PEAK HCD FTMS 0 0 0 6197 17400.66796875 0.5747055285868062 8 -0.21900558471679688 7 Oxidation (M) _HLFCMPGM(Oxidation (M))_ REV__ENST00000233575.6_1_2:27594154-27595553:+|nuORF 2.8892196856762586 0.38822285293237185 1 D 1 -1 3.4949 0 0 0.36773 0 0 426.22100344057316 406.11029993228755 832.3313033728607 0 0 0 0 0 0 0 0 0 D 0.36773 - 2 + NaN NaN 105285.2 NaN 4118 2084 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6206 36.392 NaN 219440 35 0 45707 0.327 + 27759 TATLHEPIM 9 41 514.7577109277235 1027.5008689222468 2 514.7576904296875 MULTI HCD FTMS 0 0 0 6205 146623.0625 0.8356012882534848 2 -0.0530853271484375 1 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 64.23631603340823 0.01165516075559909 1 [TA]T{I|L}{[YC]|[HE]}P{I|L}{M(Oxidation (M))|F} 9 0 + 57.853 0 0 5.6305 5.6305 91.966 0 0 0 52.36880000633434 16.478174818886373 16.478174818886373 45.728050365394424 0 1.8494850021680094 0 0.3494850021680094 0 + + [TA]T{I|L}{[YC]|[HE]}P{I|L}{M(Oxidation (M))|F};[TA]T[YK]{[MS]|[{M(Oxidation (M))|F}A]}{[QV]|[N{I|L}]|[RA]|[KV]} 5.6305;1.1801 +;- + 63 + NaN NaN 131284.4 NaN 4119 2085 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6207 36.397 NaN 348740 35 0 31420 0.261 + 29775 VEEETVEVLT 10 35 574.2907481779872 1146.5669434227743 2 574.2909545898438 MULTI HCD FTMS 0 0 0 6205 178842.09375 0.04048130947263775 31 -0.793304443359375 2 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 36.12702656103203 0.1790159924230938 1 EVT{I|L} 4 -1 55.918 0 0 4.877 0 0 686.3166371076187 0 686.3166371076187 0 25.24227503252014 0 0 0 1.3494850021680094 0 1.3494850021680094 0 EVT{I|L} 4.877 - 77 NaN NaN 144148.7 NaN 4120 2085 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6208 36.4 NaN 197050 35 0 22695 0.261 + 14010 KYTEKLEEI 9 68 576.8109427616424 1151.6073325900848 2 576.81103515625 MULTI HCD FTMS 0 0 0 6205 68754.0625 0.7169992097180241 -2 0.049877166748046875 3 Unmodified _KYTEKLEEI_ ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41 32.037481411007896 0.10189719824197178 1 KYT 3 6 28.857 0 0 2.5058 0 0 0 756.3794039361936 756.3794039361936 2.914478256039672 0 0 0 0 0.3054621874040891 0 0.6109243748081782 0 + KYT 2.5058 + + 204 + NaN NaN 114088.2 NaN 4121 2085 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6209 36.404 NaN 71052 35 0 7598.9 0.262 -1 VAAPADPEM 9 27 458.70765142241885 915.4007499116377 2 458.7078857421875 MULTI HCD FTMS 0 0 0 6205 17551.474609375 0.8186898619023337 1 -0.023212432861328125 4 Oxidation (M) _VAAPADPEM(Oxidation (M))_ ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 20.453626601364224 0.18364154288633264 1 [Q{I|L}][PA]DP[{M(Oxidation (M))|F}E] 8 -1 + 23.645 0 0 2.583 2.583 87.142 0 0 0 21.426675035687307 6.989700043360184 6.989700043360184 23.645162531850872 0 1 0 0 0 [Q{I|L}][PA]DP[{M(Oxidation (M))|F}E] 2.583 - 33 + NaN NaN 116197.4 NaN 4122 2085 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6210 36.407 NaN 27447 35 0 4761.4 0.261 + 3424 EFHYYKCL 8 19 551.7549758965334 1101.4953988598668 2 551.75537109375 MULTI HCD FTMS 0 0 0 6205 10806.1875 0.19646129014114275 -21 0.52801513671875 5 Unmodified _EFHYYKCL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion;SYNE2|p.D503Afs*13|1|0.06|ENSG00000054654|chr14:63978952-63978953|-/CTATGGCTAAAATTATAGTTAA|frameshift_variant 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 103624.8 NaN 4123 2085 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6211 36.41 NaN 31952 35 0 4644.2 0.261 + 23636 RPTPQDYEM 9 19 568.7553530718475 1135.4961532104949 2 568.7540283203125 MULTI HCD FTMS 0 0 0 6205 25405.94921875 1 0 0 6 Unmodified _RPTPQDYEM_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8 2.9952420565917617 0.3283108881486655 1 YEM 3 6 26.198 0 0 2.3072 0 0 694.3392811505875 0 694.3392811505875 0 15.740312677277187 0 0 0 0 0 0 0 + YEM 2.3072 + + 8 NaN NaN 83975.9 NaN 4124 2085 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6213 36.416 NaN 191960 35 0 28889 0.327 + 24750 RYMEVSGNL 9 39 542.7569651272369 1083.4993773212736 2 542.7582397460938 MULTI HCD FTMS 0 0 0 6212 111123 0.8972467452772582 1 -0.029872894287109375 1 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 42.312485326615175 0.05472917415473307 1 EVSGN{I|L} 6 3 52.256 0 0 4.8229 0 0 466.1990879504841 0 466.1990879504841 0 38.44335023848103 0 0 0 1.3494850021680094 0 0 0 + EVSGN{I|L} 4.8229 + + 165 NaN NaN 110009.2 NaN 4125 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6214 36.42 NaN 214100 35 0 19853 0.261 -1 FSLTMMVIF 9 58 560.7767535511904 NaN 0 560.7657470703125 PEAK HCD FTMS 0 0 0 6212 8718.359375 0.839017726359325 -5 0.11295700073242188 2 2 Oxidation (M) _FSLTM(Oxidation (M))M(Oxidation (M))VIF_ ENSG00000107951|ENST00000263063|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF;nc|ENSG00000107951|Q9NVV4-2|MTPAP 15.847184025352803 0.21527282152051216 1 HTV{M(Oxidation (M))|F}HV 6 -1 33.919 0 0 3.0298 0 0 165.10047242193156 231.07717310123283 396.1776455231644 0 0 0 0 0 0.5 0 0.7059771852360797 0 HTV{M(Oxidation (M))|F}HV 3.0298 - 261 + NaN NaN 114961 NaN 4126 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6215 36.424 NaN 126940 35 0 14365 0.261 + 6001 FPDRIDECP 9 34 546.24513017875 1090.4757074242998 2 546.2444458007812 MULTI HCD FTMS 0 0 0 6212 37378.37109375 0.5975683758466012 -10 0.2425537109375 3 Unmodified _FPDRIDECP_ nc|ENSG00000061938|Q07912-2|TNK2 32.78568957990786 0.09846250359632436 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[ES]|[DT]|[{I|L}C]}RDPE 9 5 + 49.108 0 0 4.5033 4.5033 80.803 0 0 0 14.466584062177432 39.64387173178174 14.466584062177432 0.5546218740408904 0 0.5 1.5228787452803376 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[ES]|[DT]|[{I|L}C]}RDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{[ES]|[DT]|[{I|L}C]}DPE;{M(Oxidation (M))|F}PD{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT][H{I|L}] 4.5033;4.4525;1.5459 -;-;- 98 NaN NaN 119687.2 NaN 4127 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6216 36.427 NaN 63123 35 0 11368 0.261 -1 WQHCSRKR 8 23 579.2927712649173 NaN 0 579.293212890625 PEAK HCD FTMS 0 0 0 6212 28691.025390625 0.6834279320564056 -12 0.295623779296875 4 Carbamidomethyl (C) _WQHC(Carbamidomethyl (C))SRKR_ MED31|p.Y108C|1|0.14|ENSG00000108590|chr17:6644540-6644540|T/C|missense_variant 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88060.3 NaN 4128 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6217 36.43 NaN 76595 35 0 11454 0.261 -1 MPVHAAVQM 9 37 500.24126626379393 998.4679795943879 2 500.2410583496094 MULTI HCD FTMS 0 0 0 6212 19356.77734375 0.42871649143109475 3 -0.09303665161132812 5 Oxidation (M) _M(Oxidation (M))PVHAAVQM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 16.942295170755138 0.21397866736869717 1 VQM 3 -1 33.94 0 0 3.3992 0 0 622.2874623029312 0 622.2874623029312 0 21.264100213633768 0 0 0 0.9247425010840047 0 0 0 VQM 3.3992 + + 43 NaN NaN 85990.7 NaN 4129 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6218 36.434 NaN 38564 35 0 6847.8 0.261 + 15993 LPQQLQVAP 9 24 497.2899451788328 992.5653374244656 2 497.2904968261719 MULTI HCD FTMS 0 0 0 6212 14562.09765625 0.3048275203403173 7 -0.1824188232421875 6 Unmodified _LPQQLQVAP_ ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC 4.3292370932331545 0.3181982124262546 1 {I|L}P 2 7 19.464 0 0 1.961 0 0 0 779.4091890924436 779.4091890924436 19.463950151760656 0 0 0 0 0 0 0 0 + {I|L}P 1.961 + + 9 + NaN NaN 96666.7 NaN 4130 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6219 36.437 NaN 30782 35 0 5204 0.261 + -1 GWAQGCKC 8 26 455.18882627810854 NaN 0 455.1883239746094 PEAK HCD FTMS 0 0 0 6212 6497.7392578125 0.8765330173765682 1 -0.029872894287109375 7 Carbamidomethyl (C) _GWAQGC(Carbamidomethyl (C))KC_ REV__ENSG00000115267|ENST00000649979|IFIH1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97455.9 NaN 4131 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6220 36.44 NaN 16012 35 0 3968.3 0.261 + 9850 HYSPLHLRR 9 15 589.830078125 NaN 0 589.830078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _HYSPLHLRR_ REV__ENST00000506163.5_1_5:70238213-70238261:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102507.4 NaN 4132 2086 6212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6222 36.446 NaN 481070 35 0 57387 0.327 -1 RQEYLKLEM 9 72 613.3160552948816 1224.6175576565631 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6221 280514.8125 0.8628812251343566 2 -0.06316375732421875 1 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 22.736283301280096 0.1639198954644489 1 HPVN{I|L}EK{I|L}E{M(Oxidation (M))|F} 10 -1 + 66.665 0 0 5.4438 5.4438 82.465 0 0 0 15.219363150559161 11.746199743006045 11.746199743006045 0.7918124604762511 0 1.5356668758921828 0 0.3807196863200844 0.28872548999643577 HPVN{I|L}EK{I|L}E{M(Oxidation (M))|F};HPVN{I|L}KE{I|L}E{M(Oxidation (M))|F};HPVGG{I|L}EK{I|L}E{M(Oxidation (M))|F};HPVGG{I|L}KE{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{I|L}NV{[ES]|[DT]|[{I|L}C]};[VP]N[QP]E{I|L}NV{[ES]|[DT]|[{I|L}C]};{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{I|L}GGV{[ES]|[DT]|[{I|L}C]};[VP]GG[QP]E{I|L}NV{[ES]|[DT]|[{I|L}C]};[VP]N[QP]E{I|L}GGV{[ES]|[DT]|[{I|L}C]} 5.4438;5.3791;4.6954;4.6308;1.6368;1.5073;0.88841;0.76192;0.76192 -;-;-;-;-;-;-;-;- 522 + NaN NaN 164962.2 NaN 4133 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6223 36.45 NaN 229150 35 0 32875 0.261 + 16012 LPRNEADEL 9 39 528.7695515194529 1055.5245501057057 2 528.769775390625 MULTI HCD FTMS 0 0 0 6221 136769.4375 1 0 0 2 Unmodified _LPRNEADEL_ ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;nc|ENSG00000100342|O14791-3|APOL1 41.95555342248728 0.056367691549927025 1 {[QN]|[E{I|L}]|[KN]}[NP]RADE{I|L} 9 3 + 56.246 0 0 5.3287 5.3287 90.155 0 0 0 3.9254497678533085 45.788493772929044 3.9254497678533085 22.557809497117837 0 0.7614393726401688 0 0.3252574989159953 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}[NP]RADE{I|L};{[QN]|[E{I|L}]|[KN]}[NP][QT]{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[NP][QT]E{I|L}{I|L} 5.3287;3.1916;2.5457 -;-;- 143 NaN NaN 116554 NaN 4134 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6224 36.453 NaN 99435 35 0 12271 0.263 + -1 KYMIEKIKF 9 47 405.89830317500696 1214.6730801252208 3 405.89849853515625 MULTI HCD FTMS 0 0 0 6221 43988.37890625 0.4495272369948159 16 -0.43213653564453125 3 Oxidation (M) _KYM(Oxidation (M))IEKIKF_ REV__ENSG00000059588|ENST00000040877|TARBP1 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5941596924067 0 1049.5941596924067 0 21.148481219398075 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 2 + NaN NaN 96251.2 NaN 4135 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6225 36.457 NaN 124580 35 0 12331 0.261 -1 LSGGISHNSM 10 44 509.7356800360482 1017.4568071388965 2 510.2212829589844 MULTI HCD FTMS 0 0 0 6221 7428.21826171875 0.5712772532231389 -1 0.029872894287109375 4 Oxidation (M) _LSGGISHNSM(Oxidation (M))_ ENSG00000132359|ENST00000254695|RAP1GAP2;ENST00000575979.1_1_17:2911424-2929416:+|nuORF;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;nc|ENSG00000132359|Q684P5-3|RAP1GAP2 10.073929032068715 0.4168838835836452 1 DNS{M(Oxidation (M))|F} 4 -1 38.708 0 0 3.8043 0 0 536.3083218867465 0 536.3083218867465 0 25.251947531406138 0 0 0 0 0 0.3252574989159953 0.7742275032520141 DNS{M(Oxidation (M))|F} 3.8043 - 75 + NaN NaN 109835.7 NaN 4136 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6226 36.46 NaN 93270 35 0 27815 0.261 + 21985 QETSFTKEAY 10 28 602.2801022709209 1202.5456516086417 2 602.280029296875 MULTI HCD FTMS 0 0 0 6221 21567.494140625 0.12899907329086135 7 -0.18243789672851562 5 Unmodified _QETSFTKEAY_ ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;TPT1-KRT17|1|fusion 1.1933415558491238 0.46898715808974617 1 Q{I|L}Q 3 9 14.693 0 0 1.2218 0 0 287.05112624561815 543.2689303033811 830.3200565489992 0 0 0 0 0 0 0 0 0 Q{I|L}Q 1.2218 - 18 + NaN NaN 93196.6 NaN 4137 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6227 36.463 NaN 58505 35 0 6815.8 0.264 + 20046 NYIKRNWRI 9 32 421.5752339534141 1261.7038724604424 3 421.5750427246094 MULTI HCD FTMS 0 0 0 6221 22126.783203125 0.4736165662138101 15 -0.3989219665527344 6 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 2.735195868890462 0.3302822318919627 1 K[KC] 3 8 7.4473 0 0 0.59026 0 0 884.5057351086831 0 884.5057351086831 0 1.962724883926656 0 0 0 0 0 0 0 K[KC] 0.59026 - 4 + NaN NaN 95210.1 NaN 4138 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6228 36.467 NaN 42023 35 0 6175.5 0.261 + 23637 RPTPQDYEM 9 23 568.7553530718475 1135.4961532104949 2 568.7557983398438 MULTI HCD FTMS 0 0 0 6221 19732.716796875 0.7766966952099525 2 -0.06316375732421875 7 Unmodified _RPTPQDYEM_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8 5.296884461304476 0.3108627248283497 1 EM 2 7 20.969 0 0 1.8467 0 0 857.40336806465 0 857.40336806465 0 10.511525224473813 0 0 0 0 0 0 0 + EM 1.8467 + + 4 NaN NaN 90295.8 NaN 4139 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6229 36.47 NaN 39830 35 0 5003.9 0.262 + 8763 HHSHLIIT 8 32 479.26631037387267 956.5180678145454 2 479.26629638671875 MULTI HCD FTMS 0 0 0 6221 10054.6923828125 0.41594951500051547 4 -0.109527587890625 8 Unmodified _HHSHLIIT_ REV__ENSG00000164307|ENST00000443439|ERAP1;REV__ENST00000503921.5_1_5:96133011-96143586:-|nuORF;REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant;REV__nc|ENSG00000164307|Q9NZ08-2|ERAP1 2.577480529830294 0.5381683276125971 1 D 1 -1 5.4846 0 0 0.57339 0 0 132.1524805116141 706.3151949518186 838.4676754634327 0 0 0 0 0 0 0 0 0 D 0.57339 - 12 + NaN NaN 109759.6 NaN 4140 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6230 36.474 NaN 69458 35 0 9557.5 0.261 + 17753 MEDQDLKP 8 31 488.2265735452628 974.4385941573256 2 488.2265930175781 MULTI HCD FTMS 0 0 0 6221 11212.00390625 0.18955420562944897 11 -0.2958106994628906 9 Unmodified _MEDQDLKP_ ENSG00000145736|ENST00000274400|GTF2H2;ENSG00000183474|ENST00000380729|GTF2H2C;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000508325.5_1_5:68860950-68862940:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF 7.910154910731844 0.5302565402355366 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 102918.3 NaN 4141 2087 6221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6232 36.479 NaN 541170 35 0 42715 0.327 + 9162 HPIKQVDVL 9 81 524.8110253751746 1047.6074978171491 2 524.8110961914062 MULTI HCD FTMS 0 0 0 6231 279547.8125 1 0 0 1 Unmodified _HPIKQVDVL_ ENSG00000107960|ENST00000224950|STN1 60.07390631473393 0.0174780869009295 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KQ]VDV{I|L} 9 0 + 59.275 0 0 5.6581 5.6581 88.5 0 0 0 19.44968960007344 20.505215510555026 19.44968960007344 10.484550065040281 0 1.2302046884880937 0 2.110924374808178 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KQ]VDV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}V[KQ]DV{I|L};[DV]V[KQ]{I|L}PH{I|L};[DV]V[KQ]{I|L}P{I|L}H 5.6581;4.6573;3.5937;2.6067 +;-;-;- + 289 NaN NaN 160575.7 NaN 4142 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6233 36.483 NaN 123290 35 0 31030 0.261 + 15384 LPDGDHDL 8 32 441.20370656745365 880.3928602017073 2 441.2034606933594 MULTI HCD FTMS 0 0 0 6231 60467.12890625 0.062056842930144185 18 -0.4751701354980469 2 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 23.1484247019978 0.4234759064137959 1 {I|L}P 2 6 39.45 0 0 4.481 0 0 0 667.233842613988 667.233842613988 23.96591250700361 0 0 0 0 0.3252574989159953 1.5228787452803376 0 0 + {I|L}P 4.481 + + 11 + NaN NaN 102726.3 NaN 4143 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6234 36.487 NaN 126260 35 0 41804 0.261 + 25004 RYVQQLQRL 9 36 602.3514780041374 1202.6884030750748 2 602.3514404296875 MULTI HCD FTMS 0 0 0 6231 58945.31640625 0.9358625933017423 -1 0.0332489013671875 3 Unmodified _RYVQQLQRL_ ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43 30.636539890814138 0.10832830463492794 1 Q{I|L}QQ 4 6 25.222 0 0 2.0971 0 0 287.19588031069105 415.2085360162719 702.404416326963 0 0 0 0 0 0 0 0 0.805462187404089 Q{I|L}QQ 2.0971 - 30 + NaN NaN 104503.9 NaN 4144 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6235 36.49 NaN 171720 35 0 32453 0.263 + 2996 EAAKPEPVI 9 36 477.2688090941414 952.5230652550828 2 477.2685852050781 MULTI HCD FTMS 0 0 0 6231 64274.8125 0.2940857745528844 -5 0.13621139526367188 4 Unmodified _EAAKPEPVI_ ENSG00000160799|ENST00000683445|CCDC12;ENST00000488069.5_1_3:46964817-47018222:-|nuORF;ENST00000603885.5_1_3:46964817-47017956:-|nuORF;ENST00000604367.1_1_3:46964817-46965171:-|nuORF;SETD2-CCDC12|1|fusion;SETD2-CCDC12|2|fusion;SETD2-CCDC12|3|fusion;SETD2-CCDC12|4|fusion 13.042465956692817 0.2476723265019929 1 [RD]K 3 8 10.458 0 0 1.0979 0 0 0 550.2880248870587 550.2880248870587 -0.5115252244738127 0 -0.5115252244738127 0 0 0 0 0 0 [RD]K 1.0979 - 9 + NaN NaN 106652.1 NaN 4145 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6236 36.493 NaN 84167 35 0 7937.1 0.261 -1 MPAPHTSITM 10 44 551.2570717501765 NaN 0 551.257080078125 PEAK HCD FTMS 0 0 0 6231 35582.1640625 0.7196910009648516 -3 0.086334228515625 5 Oxidation (M) _MPAPHTSITM(Oxidation (M))_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 36.12702656103203 0.15814681568024677 1 TT 2 -1 22.959 0 0 2.0862 0 0 64.00177754993508 831.3820103090017 895.3837878589368 0 0 0 0 0 0.5 0 0.8494850021680094 0 TT 2.0862 - 11 + NaN NaN 100968.7 NaN 4146 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6237 36.497 NaN 81120 35 0 6172.7 0.263 -1 CPAPLCEYCP 10 43 403.8300522853275 NaN 0 403.4950866699219 PEAK HCD FTMS 0 0 0 6231 6623.9873046875 0.6871145216363241 4 -0.10606002807617188 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PAPLCEYC(Carbamidomethyl (C))P_ ENSG00000147905|ENST00000336755|ZCCHC7;GLIPR2-ZCCHC7|1|fusion 2.0860074813731053 0.33839895573887124 1 W 1 -1 4.6041 0 0 0.57148 0 0 385.66006895784034 230.8921297662719 616.5521987241123 0 0 0 0 0 0 0 0 0 W 0.57148 - 1 + NaN NaN 112240.9 NaN 4147 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6238 36.5 NaN 18285 35 0 5924.7 0.261 + -1 GFGPFMAGYAM 11 11 590.743647334352 1179.4727417355039 2 590.743896484375 MULTI HCD FTMS 0 0 0 6231 15512.50390625 0.8349480065652901 -3 0.086334228515625 7 2 Oxidation (M) _GFGPFM(Oxidation (M))AGYAM(Oxidation (M))_ REV__AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant;REV__ENSG00000178522|ENST00000322937|AMBN;REV__nc|ENSG00000178522|Q9NP70-2|AMBN 3.5964929083625545 0.40314767035630406 1 A{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.2018 0 0 943.3895741193375 0 943.3895741193375 0 25.969100130080562 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 2.2018 + + 2 NaN NaN 104067.4 NaN 4148 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6239 36.503 NaN 11012 35 0 3889.8 0.261 + 17823 MGLYRERVF 9 11 585.8073470437934 1169.6001411543866 2 585.8078002929688 MULTI HCD FTMS 0 0 0 6231 9490.13671875 0.2530077721413238 21 -0.5481109619140625 8 Unmodified _MGLYRERVF_ ENST00000361464.7_1_10:103545820-103546054:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95738.8 NaN 4149 2088 6231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6241 36.509 NaN 2848300 35 0 237340 0.327 + 9004 HPEKLATVL 9 113 504.2977957027317 1006.5810384722635 2 504.2980041503906 MULTI HCD FTMS 0 0 0 6240 1919926 0.868644666412322 -3 0.09303665161132812 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 103.41943736471063 0.004016698775839292 1 {[TV]|[{I|L}S]}[PG]{I|L}HATV{I|L} 10 5 + 52.189 0 0 5.1848 5.1848 83.585 0 0 0 6.655529174827194 5.042644353703523 5.042644353703523 4.030899869919438 0 0.6549471895720985 2 2.1237125054200234 0 {[TV]|[{I|L}S]}[PG]{I|L}HATV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}AHTV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAVH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EK{I|L}ATV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}ATVH{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAHV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAV{I|L}H;{[TV]|[{I|L}S]}[{I|L}A][PG]HTV{I|L};{[TV]|[{I|L}S]}[{I|L}A]K[EP]H{I|L};{[TV]|[{I|L}S]}[PG]{I|L}ATHV{I|L} 5.1848;4.7843;4.78;4.5236;4.4809;4.4061;4.1831;4.1691;4.1405;4.107 -;-;-;+;-;-;-;-;-;- + 3939 NaN NaN 527276.5 NaN 4150 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6242 36.513 NaN 225000 35 0 66280 0.261 -1 RYLEKPMEI 9 43 597.8130841336915 1193.611615334183 2 597.8131713867188 MULTI HCD FTMS 0 0 0 6240 99185.828125 0.20830745306965304 24 -0.610809326171875 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 18.373094154950223 0.20161688160436167 1 KE 2 -1 19.464 0 0 1.6307 0 0 504.22589709630637 429.2259615533813 933.4518586496877 0 0 0 0 0 1 0 0 0 KE 1.6307 - 30 + NaN NaN 126419 NaN 4151 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6243 36.517 NaN 196210 35 0 27475 0.264 + -1 MFLALILEEM 10 59 409.21310851051163 NaN 0 409.213134765625 PEAK HCD FTMS 0 0 0 6240 80271.9375 0.7187187303419759 2 -0.04636383056640625 3 Oxidation (M) _MFLALILEEM(Oxidation (M))_ REV__ENSG00000138279|ENST00000372921|ANXA7;REV__nc|ENSG00000138279|P20073|ANXA7 12.174745833636585 0.32976439397284646 1 E 1 -1 9.6041 0 0 1.1764 0 0 522.3230848415327 162.02301965885002 684.3461045003827 0 0 0 0 0 0 0 0.5 0 E 1.1764 + + 14 + NaN NaN 110621.1 NaN 4152 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6244 36.52 NaN 79126 35 0 15877 0.261 + 26569 SVSDLAPPR 9 32 471.2561451268262 940.4977373204524 2 471.2559509277344 MULTI HCD FTMS 0 0 0 6240 29739.171875 0.2162423259422123 7 -0.17290115356445312 4 Unmodified _SVSDLAPPR_ ENSG00000166295|ENST00000299381|ANAPC16 24.020572477871973 0.15282392193088168 1 AD{[TV]|[{I|L}S]}[PA] 6 5 18.913 0 0 2.011 0 0 368.21730724498246 0 368.21730724498246 0 18.913187455970547 0 0 0 0.9247425010840047 0 0 0 AD{[TV]|[{I|L}S]}[PA] 2.011 - 11 NaN NaN 98501.2 NaN 4153 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6245 36.523 NaN 63988 35 0 6885.6 0.261 + 26455 STRTTTTPFP 10 33 554.785147411307 1107.5557418894139 2 554.784912109375 MULTI HCD FTMS 0 0 0 6240 17290.806640625 0.0083038648404339 41 -1.0517234802246094 5 Unmodified _STRTTTTPFP_ ENSG00000143443|ENST00000368926|C1orf56 5.296884461304476 0.4472664531305844 1 T 1 9 16.237 0 0 1.466 0 0 647.3284907681233 356.1572359674438 1003.4857267355671 0 0 0 0 0 0.9247425010840047 0 0 0 + T 1.466 + + 14 + NaN NaN 93724 NaN 4154 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6246 36.527 NaN 71750 35 0 12705 0.261 + 26429 STIEMPQQAR 10 38 580.7897029430479 1159.5648529528958 2 580.7901611328125 MULTI HCD FTMS 0 0 0 6240 28960.12890625 1 0 0 6 Unmodified _STIEMPQQAR_ ENSG00000198523|ENST00000357525|PLN 20.41453444215458 0.3201613495159799 1 {[MG]|[TS]}{I|L}EM 5 5 31.466 0 0 2.7136 0 0 0 595.294738091733 595.294738091733 23.322646798160562 0 0 0 0 0.9247425010840047 0 0 0 + {[MG]|[TS]}{I|L}EM 2.7136 + + 30 + NaN NaN 94158.2 NaN 4155 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6247 36.53 NaN 26701 35 0 4012.4 0.262 + 30892 VQSLLRPR 8 26 484.8036136449243 967.5926743566487 2 484.8031005859375 MULTI HCD FTMS 0 0 0 6240 7790.15380859375 0.5923879529209636 1 -0.02983856201171875 7 Unmodified _VQSLLRPR_ REV__ENSG00000114491|ENST00000232607|UMPS 2.0597508629832335 0.5389364538378849 1 R 1 -1 15.485 0 0 1.6003 0 0 793.4810543388737 0 793.4810543388737 0 15.484550065040281 0 0 0 0 0 0 0 R 1.6003 + + 1 + NaN NaN 83217.1 NaN 4156 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6248 36.533 NaN 35043 35 0 6151.2 0.261 + -1 YGCMSRLI 8 23 479.72761258438175 957.4406722355635 2 479.72772216796875 MULTI HCD FTMS 0 0 0 6240 5528.08740234375 0.22942614136715048 -7 0.18271636962890625 8 Oxidation (M) _YGCM(Oxidation (M))SRLI_ REV__ENSG00000135677|ENST00000258145|GNS;REV__nc|ENSG00000135677|P15586-2|GNS 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84126.1 NaN 4157 2089 6240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6250 36.539 NaN 1325100 35 0 133880 0.327 + 18978 NAQKEIATL 9 87 494.2770292209345 986.539505508669 2 494.2773132324219 MULTI HCD FTMS 0 0 0 6249 807916.1875 0.7854463351068471 1 -0.0165252685546875 1 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 181.69086120494794 9.610660986922852E-13 1 {[QG]|[NA]}QKE{I|L}AT{I|L} 9 0 + 107.62 0 0 10.909 10.909 90.383 0 0 0 2.2493218338478727 2.2493218338478727 2.2493218338478727 2.2493218338478727 0 2.5994850021680094 1.6989700043360187 0.49164406112826264 1.7658715643802765 + + {[QG]|[NA]}QKE{I|L}AT{I|L};NAQKE{I|L}AT{I|L};{[QG]|[NA]}[AG]KE{I|L}AT{I|L};NA[AG]KE{I|L}AT{I|L};{[QN]|[E{I|L}]|[KN]}[QA]E{I|L}AT{I|L};{[QG]|[NA]}[VS][QA]{I|L}AT{I|L};NAQVV[TA]AT{I|L};[TA][QA][QA]{I|L}AT{I|L};{[QG]|[NA]}QKE[TA]{I|L}{I|L};NAQVV{[QD]|[EN]|[WG]|[KD]|[RS]}T{I|L} 10.909;10.681;9.9756;9.7476;7.9715;7.8269;7.5328;6.8145;6.716;5.9333 +;+;-;-;-;-;-;-;-;- + 1501 NaN NaN 282510.6 NaN 4158 2090 6249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6251 36.543 NaN 265660 35 0 21791 0.261 + 27883 TEEDLDLVTL 10 42 574.2907481779872 1146.5669434227743 2 574.2908325195312 MULTI HCD FTMS 0 0 0 6249 109168.7578125 0.024710593446355535 36 -0.9190559387207031 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 24.020572477871973 0.2864316864133941 1 {I|L}EVT{I|L} 5 6 56.938 0 0 4.966 0 0 573.2343006818375 0 573.2343006818375 0 28.010299956639813 0 0 0 1 0 1.3494850021680094 0 {I|L}EVT{I|L} 4.966 - 44 NaN NaN 128344.6 NaN 4159 2090 6249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6252 36.546 NaN 66325 35 0 12354 0.261 -1 TATLHEPIM 9 29 514.7577109277235 1027.5008689222468 2 514.7576904296875 MULTI HCD FTMS 0 0 0 6249 39759.53515625 0.22658862958153134 7 -0.16627120971679688 3 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 26.88365393820708 0.12808753336095696 1 [TA]T{I|L}{[YC]|[HE]}[{I|L}P]{M(Oxidation (M))|F} 9 -1 + 28.362 0 0 2.7603 2.7603 87.609 0 0 0 6.372724716820247 17.560443407534624 6.372724716820247 28.362424760180435 0 1 0 0 0 [TA]T{I|L}{[YC]|[HE]}[{I|L}P]{M(Oxidation (M))|F} 2.7603 + + 8 + NaN NaN 96309.3 NaN 4160 2090 6249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6253 36.55 NaN 81116 35 0 10091 0.261 + 21877 QCQEQAQL 8 36 474.2168278832743 946.4191028333486 2 474.2159729003906 MULTI HCD FTMS 0 0 0 6249 40538.16796875 0.7721536844440784 -3 0.0930023193359375 4 Unmodified _QCQEQAQL_ REV__ENSG00000008710|ENST00000262304|PKD1;REV__nc|ENSG00000008710|P98161-2|PKD1;REV__nc|ENSG00000008710|P98161-3|PKD1 29.081581746732265 0.3711897268585781 1 QAQ{I|L} 4 -1 44.68 0 0 4.721 0 0 488.1699391095719 0 488.1699391095719 0 37.69077524932108 0 0 0 1 0 0 0.9247425010840047 QAQ{I|L} 4.721 + + 18 NaN NaN 94385.1 NaN 4161 2090 6249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6255 36.555 NaN 224510 35 0 25037 0.326 + 5038 FDLAAYHING 10 47 560.7767535511904 NaN 0 560.7657470703125 PEAK HCD FTMS 0 0 0 6254 10391.150390625 1 0 0 1 Unmodified _FDLAAYHING_ REV__nc|ENSG00000215568|Q2WGN9|GAB4 10.073929032068715 0.33156240198919784 1 SVH{M(Oxidation (M))|F}VT 6 -1 37.128 0 0 3.3163 0 0 147.0914458140058 299.1150301568969 446.2064759709027 0 0 0 0 0 0.4247425010840047 0 0.5 0 SVH{M(Oxidation (M))|F}VT 3.3163 - 206 + NaN NaN 112757.4 NaN 4162 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6256 36.559 NaN 259990 35 0 68949 0.261 + 3384 EESKLDQVL 9 50 530.7792301922836 NaN 0 530.7621459960938 PEAK HCD FTMS 0 0 0 6254 7993.0517578125 1 0 0 2 Unmodified _EESKLDQVL_ nc|ENSG00000119397|Q7Z7A1-4|CNTRL 4.3292370932331545 0.2742679634796037 1 WV 2 8 8.5835 0 0 0.81011 0 0 99.10342682615881 672.2455538385374 771.3489806646962 0 0 0 0 0 0 0 0 0 WV 0.81011 - 54 + NaN NaN 127158.6 NaN 4163 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6257 36.563 NaN 134060 35 0 20530 0.261 -1 RYMEVSGNL 9 36 542.7569651272369 1083.4993773212736 2 542.7583618164062 MULTI HCD FTMS 0 0 0 6254 57926.06640625 0.4677157253648852 6 -0.14974594116210938 3 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 24.881564428377168 0.14538514251145815 1 EVSGN{I|L} 6 -1 49.998 0 0 4.6145 0 0 466.1973990350308 0 466.1973990350308 0 41.04548165299995 0 0 0 1.1861818737241734 0 0 0 EVSGN{I|L} 4.6145 + + 64 NaN NaN 103562.5 NaN 4164 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6258 36.566 NaN 109210 35 0 20257 0.261 -1 FPDSEPPRM 9 36 546.24513017875 1090.4757074242998 2 546.2448120117188 MULTI HCD FTMS 0 0 0 6254 30945.12109375 0.4947199466233718 -5 0.13940048217773438 4 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 24.990960013464015 0.14443998892849796 1 DRESDPE 7 -1 55.477 0 0 5.0874 0 0 244.121873924025 0 244.121873924025 0 55.47691990337874 0 0 0 0.5 0 0 0 DRESDPE 5.0874 - 76 NaN NaN 105823.2 NaN 4165 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6259 36.57 NaN 83086 35 0 23981 0.261 + 14046 KYVESLDVVT 10 31 576.8109427616424 1151.6073325900848 2 576.8108520507812 MULTI HCD FTMS 0 0 0 6254 35951.62109375 0.3749201570787267 4 -0.09285354614257812 5 Unmodified _KYVESLDVVT_ REV__ENSG00000125633|ENST00000376300|CCDC93 2.9952420565917617 0.4594494122822477 1 KY 2 -1 19.464 0 0 1.6902 0 0 0 857.4267061822874 857.4267061822874 19.463950151760656 0 0 0 0 0 0 0 0 KY 1.6902 + + 7 + NaN NaN 106821 NaN 4166 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6260 36.573 NaN 72205 35 0 17801 0.261 + 2726 DVSDSSFPK 9 34 491.2299766405386 980.4454003478772 2 491.2304382324219 MULTI HCD FTMS 0 0 0 6254 22020.509765625 0.7604813982738771 -3 0.0762786865234375 6 Unmodified _DVSDSSFPK_ ENSG00000049618|ENST00000636930|ARID1B;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B 6.723162845929126 0.3000504726104499 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 112597.9 NaN 4167 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6261 36.576 NaN 15386 35 0 4996.8 0.261 -1 VPEDCGVCTNC 11 10 627.2335502911242 NaN 0 627.2339477539062 PEAK HCD FTMS 0 0 0 6254 2623.977294921875 0.2272365945811365 4 -0.09285354614257812 7 2 Carbamidomethyl (C) _VPEDC(Carbamidomethyl (C))GVC(Carbamidomethyl (C))TNC_ ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94492.2 NaN 4168 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6262 36.58 NaN 12788 35 0 4405.3 0.261 + -1 KCFILHMML 9 10 604.8020629882812 NaN 0 604.8020629882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _KC(Carbamidomethyl (C))FILHM(Oxidation (M))ML_ REV__ENSG00000188000|ENST00000641288|OR7D2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108082.7 NaN 4169 2091 6254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6264 36.585 NaN 161210 35 0 23702 0.327 -1 RQEYLKLEM 9 47 613.3160552948816 1224.6175576565631 2 613.31591796875 MULTI HCD FTMS 0 0 0 6263 98963.125 0.3044168034553415 7 -0.17969512939453125 1 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 10.823927491677226 0.26684000660059787 1 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 33.276 0 0 2.7173 0 0 542.2950916974625 0 542.2950916974625 0 2.078343878162343 0 0 0 0 0 0.8494850021680094 0 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7173 - 43 NaN NaN 104166.2 NaN 4170 2092 6263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6265 36.589 NaN 57881 35 0 7052.3 0.262 -1 MPVHAAVQM 9 28 500.24126626379393 998.4679795943879 2 500.2411804199219 MULTI HCD FTMS 0 0 0 6263 15319.4404296875 0.33929701391248857 9 -0.23971176147460938 2 Oxidation (M) _M(Oxidation (M))PVHAAVQM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 7.910154910731844 0.2910521888787154 1 VQM 3 -1 31.198 0 0 3.1246 0 0 622.286424705275 0 622.286424705275 0 14.208187539523749 0 0 0 0.5 0 0 0 VQM 3.1246 + + 22 NaN NaN 118666.5 NaN 4171 2092 6263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6266 36.593 NaN 55411 35 0 10385 0.261 + -1 HQTESLMT 8 23 481.71612515155437 961.4176973699088 2 481.7159118652344 MULTI HCD FTMS 0 0 0 6263 14511.78125 0.010086278003405351 171 -4.658443450927734 3 Oxidation (M) _HQTESLM(Oxidation (M))T_ REV__ENSG00000104518|ENST00000262580|GSDMD;REV__ENST00000524846.5_1_8:144644315-144645071:+|nuORF;REV__ENST00000531184.5_1_8:144643499-144645071:+|nuORF 4.3292370932331545 0.5355693454741696 1 V[{M(Oxidation (M))|F}T] 3 -1 15.458 0 0 1.6078 0 0 596.2567609458838 0 596.2567609458838 0 15.45757490560675 0 0 0 0.5 0 0 0 V[{M(Oxidation (M))|F}T] 1.6078 - 3 + NaN NaN 107124.8 NaN 4172 2092 6263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6268 36.598 NaN 98541 35 0 9691 0.327 -1 WHEVTLSM 8 40 509.7356800360482 1017.4568071388965 2 510.2207336425781 MULTI HCD FTMS 0 0 0 6267 5447.1982421875 0.4189242076522883 4 -0.10672760009765625 1 Oxidation (M) _WHEVTLSM(Oxidation (M))_ ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-2|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-4|CRB1 5.230669730166228 0.5342319408533849 1 S{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.7651 0 0 765.3789395625278 0 765.3789395625278 0 7.781512503836437 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.7651 + + 17 + NaN NaN 98951.9 NaN 4173 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6269 36.602 NaN 124340 35 0 10398 0.261 + 35830 YYQDTPKQI 9 38 578.2877798658997 NaN 0 578.287841796875 PEAK HCD FTMS 0 0 0 6267 50158.8125 0.40540594469029956 -3 0.059543609619140625 2 Unmodified _YYQDTPKQI_ ENSG00000048162|ENST00000614830|NOP16 86.33184430468982 0.0009180489556750797 1 QDTPK 5 4 50.177 0 0 4.346 0 0 326.1264820340355 256.12998377017817 582.2564658042137 0 0 0 0 0 1.805462187404089 0 0.7614393726401688 0.805462187404089 + QDTPK 4.346 + + 39 + NaN NaN 97343 NaN 4174 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6270 36.606 NaN 53685 35 0 9412 0.261 + 16013 LPRNEADEL 9 25 528.7695515194529 1055.5245501057057 2 528.7697143554688 MULTI HCD FTMS 0 0 0 6267 37445.7109375 0.2737871239508461 6 -0.1664581298828125 3 Unmodified _LPRNEADEL_ ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;nc|ENSG00000100342|O14791-3|APOL1 11.494710602746466 0.2610445893512368 1 ADE{I|L} 4 5 36.186 0 0 3.4282 0 0 609.3239613263687 0 609.3239613263687 0 29.195925227640984 0 0 0 0.4247425010840047 0 0 0 + ADE{I|L} 3.4282 + + 30 NaN NaN 107358.5 NaN 4175 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6271 36.609 NaN 72675 35 0 9523.7 0.263 -1 KYMTAVVKLF 10 34 405.89830317500696 1214.6730801252208 3 405.8985290527344 MULTI HCD FTMS 0 0 0 6267 35431.71484375 0.36208474310100375 22 -0.5745010375976562 4 Oxidation (M) _KYM(Oxidation (M))TAVVKLF_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 7.477065608646677 0.43572640772348226 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.8103 0 0 1049.5939460693598 0 1049.5939460693598 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8103 + + 2 + NaN NaN 93002.2 NaN 4176 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6272 36.613 NaN 115030 35 0 29660 0.261 -1 0 32 441.29757393943584 440.29029747283585 1 441.2975769042969 MULTI HCD FTMS 0 0 0 6267 31775.400390625 0.7291937367077601 -12 0.2953758239746094 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.3169 0 0 275.21134652244365 0 275.21134652244365 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.3169 - 1 + NaN NaN 99524 NaN 4177 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6273 36.616 NaN 36802 35 0 5177.5 0.261 + 26591 SVTALAVSR 9 26 452.26629539714804 902.5180378610961 2 452.2663879394531 MULTI HCD FTMS 0 0 0 6267 21147.25 0.9117988068811496 1 -0.0298919677734375 6 Unmodified _SVTALAVSR_ ENSG00000131653|ENST00000326181|TRAF7;nc|ENSG00000131653|Q6Q0C0-2|TRAF7 10.799506525563784 0.2670509983294061 1 [VS][TA]{I|L}AV{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 40.123 0 0 4.4457 4.4457 89.804 0 0 0 38.86427748576825 7.147642715192504 7.147642715192504 40.123337350737245 0 0 1.6989700043360187 0 0 + + [VS][TA]{I|L}AV{[QD]|[EN]|[WG]|[KD]|[RS]} 4.4457 + + 15 + NaN NaN 85480.3 NaN 4178 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6274 36.619 NaN 27032 35 0 4866.7 0.261 + -1 LFCVYCDPV 9 20 586.758625657173 1171.5026983811458 2 586.7593383789062 MULTI HCD FTMS 0 0 0 6267 11058.57421875 0.6912299526020758 -5 0.11929702758789062 7 2 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))VYC(Carbamidomethyl (C))DPV_ REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF 2.0597508629832335 0.3354026079994024 1 W 1 -1 6.9897 0 0 0.59664 0 0 458.7010148868083 523.6930025690061 982.3940174558145 0 0 0 0 0 0 0 0 0 W 0.59664 - 3 + NaN NaN 87835.6 NaN 4179 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6275 36.623 NaN 26279 35 0 2798.6 0.261 + 23638 RPTPQDYEM 9 20 568.7553530718475 1135.4961532104949 2 568.7553100585938 MULTI HCD FTMS 0 0 0 6267 9458.3525390625 0.3722888862614148 8 -0.22647476196289062 8 Unmodified _RPTPQDYEM_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8 3.2813086475875832 0.32614229037259 1 EM 2 7 19.464 0 0 1.7141 0 0 857.4001332013687 0 857.4001332013687 0 9.006375246153906 0 0 0 0 0 0 0 + EM 1.7141 + + 3 NaN NaN 95590.6 NaN 4180 2093 6267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6277 36.628 NaN 247270 35 0 17335 0.327 + 9163 HPIKQVDVL 9 67 524.8110253751746 1047.6074978171491 2 524.8109130859375 MULTI HCD FTMS 0 0 0 6276 100623.203125 0.35994988558531466 6 -0.16341781616210938 1 Unmodified _HPIKQVDVL_ ENSG00000107960|ENST00000224950|STN1 45.69961567697781 0.039180348357221985 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}V[KQ]DV{I|L} 9 2 + 37.849 0 0 3.6129 3.6129 88.684 0 0 0 9.616896572348224 20.85910607263324 9.616896572348224 37.848806115993426 0 1.1549471895720984 0 1.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}V[KQ]DV{I|L} 3.6129 - 89 NaN NaN 125042 NaN 4181 2094 6276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6278 36.632 NaN 113680 35 0 24838 0.261 + 16253 LQDSTGNF 8 35 441.20370656745365 880.3928602017073 2 441.20343017578125 MULTI HCD FTMS 0 0 0 6276 26063.7734375 0.026749004353845224 24 -0.6074256896972656 2 Unmodified _LQDSTGNF_ ENSG00000168487|ENST00000306385|BMP1;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENST00000523457.5_1_8:22037227-22049699:+|nuORF;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-6|BMP1 2.302733041254933 0.5385759549224092 1 {I|L}P 2 7 20.969 0 0 2.3818 0 0 0 667.2326143854124 667.2326143854124 5.484550065040281 0 0 0 0 0 0 0 0 {I|L}P 2.3818 - 4 + NaN NaN 97159.6 NaN 4182 2094 6276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6279 36.636 NaN 88247 35 0 22294 0.261 + 2727 DVSHPIIYR 9 30 550.2987212546872 NaN 0 550.2982177734375 PEAK HCD FTMS 0 0 0 6276 22428.6953125 0.5407390804392028 3 -0.07683563232421875 3 Unmodified _DVSHPIIYR_ ENSG00000169018|ENST00000306917|FEM1B 18.1463463914782 0.1998403495282098 1 VSH 3 6 21.198 0 0 1.9296 0 0 115.02706454431411 657.3730370890773 772.4001016333915 0 0 0 0 0 0.5 0 0 0 + VSH 1.9296 + + 8 + NaN NaN 100693 NaN 4183 2094 6276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6280 36.639 NaN 48529 35 0 17670 0.261 + 17222 LYNQRLRLQ 9 13 602.3514780041374 1202.6884030750748 2 602.3519287109375 MULTI HCD FTMS 0 0 0 6276 25667.876953125 0.4075235719212216 5 -0.136566162109375 4 Unmodified _LYNQRLRLQ_ ENSG00000128185|ENST00000248879|DGCR6L;ENSG00000183628|ENST00000331444|DGCR6;nc|ENSG00000183628|Q14129-2|DGCR6 4.3292370932331545 0.3181982124262546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100979.3 NaN 4184 2094 6276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6281 36.643 NaN 57845 35 0 8476.4 0.263 + 21769 QAGSIAIVR 9 38 457.7744064354722 913.5342599377444 2 457.7745056152344 MULTI HCD FTMS 0 0 0 6276 25551.958984375 0.8838765299912332 -1 0.0298919677734375 5 Unmodified _QAGSIAIVR_ ENSG00000168404|ENST00000308807|MLKL 9.38312468134398 0.279288223203164 1 {I|L}VR 3 6 18.672 0 0 2.0439 0 0 527.2708760039538 0 527.2708760039538 0 11.682437647924221 0 0 0 0 0 0 0 + {I|L}VR 2.0439 + + 21 + NaN NaN 95163.3 NaN 4185 2094 6276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6283 36.648 NaN 2710200 35 0 221580 0.327 + 9005 HPEKLATVL 9 103 504.2977957027317 1006.5810384722635 2 504.298095703125 MULTI HCD FTMS 0 0 0 6282 1913839.625 0.8658909679981459 3 -0.0934295654296875 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 76.82478488871298 0.006879825292024087 1 {[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L} 9 8 + 49.961 0 0 4.9634 4.9634 82.358 0 0 0 11.500721927320434 2.8147325552957483 2.8147325552957483 2.230953907268095 0 0 2 1.7619229975844686 0 {[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L};{[TV]|[{I|L}S]}[PG]{I|L}HATV{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]HTV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}AHTV{I|L};{[TV]|[{I|L}S]}[{I|L}A]KEP{I|L}H;{[TV]|[{I|L}S]}[{I|L}A][PS]AVH{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAVH{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]TVH{I|L};[EP]K{I|L}HATV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}ATVH{I|L} 4.9634;4.7418;4.4505;4.42;4.3387;4.1358;4.1052;3.8367;3.8209;3.8062 -;-;-;-;-;-;-;-;-;- 2362 NaN NaN 497958 NaN 4186 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6284 36.652 NaN 290880 35 0 71500 0.261 + 2997 EAAKPEPVI 9 34 477.2688090941414 952.5230652550828 2 477.2686462402344 MULTI HCD FTMS 0 0 0 6282 184941.71875 0.8461903892093884 2 -0.05689239501953125 2 Unmodified _EAAKPEPVI_ ENSG00000160799|ENST00000683445|CCDC12;ENST00000488069.5_1_3:46964817-47018222:-|nuORF;ENST00000603885.5_1_3:46964817-47017956:-|nuORF;ENST00000604367.1_1_3:46964817-46965171:-|nuORF;SETD2-CCDC12|1|fusion;SETD2-CCDC12|2|fusion;SETD2-CCDC12|3|fusion;SETD2-CCDC12|4|fusion 13.042465956692817 0.2476723265019929 1 K[EP][{I|L}T]{I|L} 6 5 13.161 0 0 1.3817 0 0 253.1064167707047 0 253.1064167707047 0 1.733937431123282 0 0 0 0 0 0.5 0 K[EP][{I|L}T]{I|L} 1.3817 - 17 NaN NaN 128138.6 NaN 4187 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6285 36.656 NaN 160810 35 0 24757 0.261 + 33741 YLENGKETL 9 33 533.7743011640696 1065.534049394939 2 533.7742309570312 MULTI HCD FTMS 0 0 0 6282 83139.6171875 0.7893783047550494 -1 0.0199432373046875 3 Unmodified _YLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 40.23920728925047 0.06424668180817725 1 Y{I|L}EN 4 5 59.157 0 0 5.5518 0 0 0 543.2800387018186 543.2800387018186 33.94016261540408 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 + Y{I|L}EN 5.5518 + + 41 + NaN NaN 113684.9 NaN 4188 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6286 36.659 NaN 176440 35 0 62030 0.261 -1 RYLEKPMEI 9 33 597.8130841336915 1193.611615334183 2 597.8131713867188 MULTI HCD FTMS 0 0 0 6282 82052 0.17232344037830427 30 -0.7831230163574219 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 8.155526934196011 0.2891920862272901 1 KH 2 -1 20.969 0 0 1.7568 0 0 561.290766800783 364.1410311334594 925.4317979342425 0 0 0 0 0 1 0 0 0 KH 1.7568 - 16 + NaN NaN 111591.9 NaN 4189 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6287 36.662 NaN 151900 35 0 39396 0.264 -1 0 37 441.7879524798002 881.5613520264004 2 441.7879943847656 MULTI HCD FTMS 0 0 0 6282 48726.3828125 0.6625431339797393 -3 0.06307220458984375 5 NaN NaN 1 [Y{M(Oxidation (M))|F}]{I|L}[C(Carbamidomethyl (C))S]P 6 -1 11.712 0 0 1.3286 0 0 0 111.23021791321779 111.23021791321779 4.722346674414341 0 0 0 0 0 0 0.3807196863200844 0 [Y{M(Oxidation (M))|F}]{I|L}[C(Carbamidomethyl (C))S]P 1.3286 - 13 NaN NaN 114284.9 NaN 4190 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6288 36.666 NaN 59416 35 0 8586.8 0.261 + -1 AASGCYTTSL 10 33 515.7289092464141 1029.4432655596281 2 515.7290649414062 MULTI HCD FTMS 0 0 0 6282 26074.92578125 0.6850302826486586 4 -0.1166229248046875 6 Carbamidomethyl (C) _AASGC(Carbamidomethyl (C))YTTSL_ REV__ENSG00000178093|ENST00000585580|TSSK6 6.2057823575117 0.44245551207394906 1 S{I|L} 2 -1 25.969 0 0 2.5226 0 0 811.3159599287055 0 811.3159599287055 0 8.979400086720375 0 0 0 0.5 0 0 0 S{I|L} 2.5226 + + 9 NaN NaN 89884.6 NaN 4191 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6289 36.669 NaN 53235 35 0 6395.3 0.261 -1 MPAPHTSITM 10 37 551.2570717501765 NaN 0 551.2569580078125 PEAK HCD FTMS 0 0 0 6282 12131.1728515625 0.24536719905746035 4 -0.1166229248046875 7 Oxidation (M) _MPAPHTSITM(Oxidation (M))_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 5.731851221503515 0.33527861879838866 1 T 1 -1 10.485 0 0 0.95271 0 0 165.04422054937783 831.3852540515434 996.4294746009211 0 0 0 0 0 0.5 0 0 0 T 0.95271 + + 2 + NaN NaN 86946.8 NaN 4192 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6290 36.673 NaN 81843 35 0 13716 0.261 -1 VDCGTEETSL 10 30 555.7345023579659 1109.4544517827317 2 555.734130859375 MULTI HCD FTMS 0 0 0 6282 25676.216796875 0.14408039948851778 -15 0.371826171875 8 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 13.042465956692817 0.38911719078024076 1 TS{I|L} 3 -1 38.188 0 0 3.442 0 0 790.2796498029312 0 790.2796498029312 0 38.187587626244124 0 0 0 1 0 0.5 0 TS{I|L} 3.442 + + 10 NaN NaN 89379.6 NaN 4193 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6291 36.676 NaN 68431 35 0 7027.1 0.261 -1 SPDSGVYEM 9 37 500.70030917361953 NaN 0 500.7007141113281 PEAK HCD FTMS 0 0 0 6282 8868.1611328125 0.5147446240033303 1 -0.03368377685546875 9 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 10.823927491677226 0.2427956001690155 1 YE 2 -1 17.206 0 0 1.7217 0 0 542.234131675561 162.02340112857658 704.2575328041376 0 0 0 0 0 0.9247425010840047 0 0 0 YE 1.7217 + + 4 + NaN NaN 104767.4 NaN 4194 2095 6282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6293 36.682 NaN 289280 35 0 29076 0.327 + 18979 NAQKEIATL 9 53 494.2770292209345 986.539505508669 2 494.27716064453125 MULTI HCD FTMS 0 0 0 6292 171445.703125 0.16667743668565593 7 -0.19607162475585938 1 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 86.33184430468982 0.004622086694044132 1 {[QG]|[NA]}QVV[TA]AT{I|L} 10 4 + 63.803 0 0 6.4673 6.4673 90.218 0 0 0 29.62144052772942 19.250058921256823 19.250058921256823 11.760912590556813 0 2.1989700043360187 2 1.5669015600442577 0 {[QG]|[NA]}QVV[TA]AT{I|L};{[QG]|[NA]}QVV{[QD]|[EN]|[WG]|[KD]|[RS]}T{I|L};[TA]{I|L}{[DA]|[EG]}[RD]{I|L}{I|L};[{I|L}T]A{[DA]|[EG]}[RD]{I|L}{I|L} 6.4673;5.2752;1.3384;1.2581 -;-;-;- 158 + NaN NaN 124019 NaN 4195 2096 6292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6294 36.686 NaN 177650 35 0 39489 0.261 + 25108 SAEQAKVVL 9 42 472.77422382831946 943.533894723439 2 472.7742004394531 MULTI HCD FTMS 0 0 0 6292 118066.421875 0.6502902413317667 -3 0.08351898193359375 2 Unmodified _SAEQAKVVL_ ENSG00000111678|ENST00000229281|C12orf57 43.981846655682396 0.04706587046877104 1 QAKVV{I|L} 6 3 53.607 0 0 5.6815 0 0 287.11262709785314 0 287.11262709785314 0 38.914412723804546 0 0 0 2.1747425010840047 0 0 0 + QAKVV{I|L} 5.6815 + + 69 NaN NaN 122969.9 NaN 4196 2096 6292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6295 36.69 NaN 57809 35 0 7025.1 0.261 -1 MPVGMTHGL 9 36 479.72761258438175 957.4406722355635 2 479.7274475097656 MULTI HCD FTMS 0 0 0 6292 24095.28125 1 0 0 3 Oxidation (M) _MPVGM(Oxidation (M))THGL_ ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant 7.289230182591677 0.29575926068275815 1 MPV 3 -1 27.435 0 0 2.8655 0 0 0 627.2553349013709 627.2553349013709 27.43501263708417 0 0 0 0 0.4247425010840047 0 0 0 MPV 2.8655 + + 4 + NaN NaN 92333.7 NaN 4197 2096 6292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6296 36.693 NaN 57273 35 0 7398 0.261 + 20047 NYIKRNWRI 9 37 421.5752339534141 1261.7038724604424 3 421.5751647949219 MULTI HCD FTMS 0 0 0 6292 25913.21875 0.554663982163887 24 -0.6200904846191406 4 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 2.735195868890462 0.3302822318919627 1 K[KC] 3 8 5.9421 0 0 0.47096 0 0 884.5048500989175 0 884.5048500989175 0 5.942124970647031 0 0 0 0 0 0 0 K[KC] 0.47096 - 5 + NaN NaN 85429.2 NaN 4198 2096 6292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6297 36.696 NaN 44586 35 0 7217.9 0.261 -1 ECAEEKIP 8 19 488.2265735452628 974.4385941573256 2 488.24285888671875 MULTI HCD FTMS 0 0 0 6292 9237.591796875 0.15617407821358917 20 -0.5041542053222656 5 Carbamidomethyl (C) _EC(Carbamidomethyl (C))AEEKIP_ ENSG00000198911|ENST00000361204|SREBF2;ENST00000424354.5_1_22:42276758-42295397:+|nuORF 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91684.8 NaN 4199 2096 6292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6298 36.7 NaN 22967 35 0 3383 0.261 -1 ECCDPPLTRM 10 18 590.743647334352 1179.4727417355039 2 590.743408203125 MULTI HCD FTMS 0 0 0 6292 6846.60546875 0.36851301520501917 5 -0.14295578002929688 6 Oxidation (M) _ECCDPPLTRM(Oxidation (M))_ ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant 1.1933415558491238 0.46898715808974617 1 S 1 -1 11.237 0 0 0.95272 0 0 233.99515492085385 855.4262789361936 1089.4214338570475 0 0 0 0 0 0 0 0.4247425010840047 0 S 0.95272 - 3 + NaN NaN 81268.3 NaN 4200 2096 6292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6300 36.705 NaN 445300 35 0 53579 0.327 + 15317 LPARDSPSL 9 56 478.2639566527583 954.5133603723166 2 478.2637939453125 MULTI HCD FTMS 0 0 0 6299 261389.578125 0.46549447514919035 -5 0.119964599609375 1 Unmodified _LPARDSPSL_ ENSG00000041802|ENST00000265245|LSG1;LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant 74.19965305603844 0.007729275404663812 1 [{I|L}P]ARDSPS{I|L} 9 0 + 68.738 0 0 7.2013 7.2013 86.645 0 0 0 4.480071641894199 44.0006060229387 4.480071641894199 3.0102999566398125 0 1.718765315847925 1.6989700043360187 0.6989700043360187 0 + + [{I|L}P]ARDSPS{I|L};[{I|L}P]ARDSSP{I|L};[PA]{I|L}RDSPS{I|L};[PA]{I|L}RDSSP{I|L};[{I|L}P]ARD[VG]D{I|L};{[TV]|[{I|L}S]}VD{[HG]|PP}KS{I|L};[PA]{I|L}RD[VG]D{I|L} 7.2013;6.886;4.7667;4.4513;4.4299;2.597;1.9953 +;-;-;-;-;-;- + 408 NaN NaN 168901.3 NaN 4201 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6301 36.709 NaN 427090 35 0 48123 0.261 + 1527 AYVHMVTHF 9 65 560.7657570063983 1119.5169610795965 2 560.7656860351562 MULTI HCD FTMS 0 0 0 6299 200144.40625 0.20388280129453662 -13 0.3389701843261719 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 101.71 0 0 9.0851 9.0851 90.867 0 0 0 5.9098171684869385 5.9098171684869385 5.9098171684869385 5.9098171684869385 0 2.8979400086720375 2 0.28872548999643577 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]AAPH{M(Oxidation (M))|F};AP{[QC]|[C(Carbamidomethyl (C))A]}A{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[NP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F} 9.0851;8.5573;7.9026;5.7294;5.0093;4.7375;4.5469;4.4054;4.3153;3.7378 +;+;-;-;-;-;-;-;-;- + 952 + NaN NaN 163631.1 NaN 4202 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6302 36.713 NaN 229880 35 0 21018 0.261 + 29776 VEEETVEVLT 10 44 574.2907481779872 1146.5669434227743 2 574.2908325195312 MULTI HCD FTMS 0 0 0 6299 91508.0859375 0.020713060714123224 43 -1.1444244384765625 3 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 24.020572477871973 0.2864316864133941 1 EVT{I|L} 4 -1 48.805 0 0 4.2566 0 0 686.3129139630875 0 686.3129139630875 0 16.866654986684736 0 0 0 0.7887254899964358 0 1.3494850021680094 0 EVT{I|L} 4.2566 - 57 NaN NaN 132781.3 NaN 4203 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6303 36.716 NaN 217080 35 0 54181 0.261 -1 LFCHCLGPI 9 58 530.2591371419664 1058.5037213507328 2 530.7621459960938 MULTI HCD FTMS 0 0 0 6299 67382.171875 0.4545497090274483 18 -0.4677734375 4 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))HCLGPI_ ENST00000517458.1_1_8:127565648-127568649:-|nuORF 9.347437153973935 0.2795965555214564 1 YQE 3 -1 23.188 0 0 2.1906 0 0 0 635.2950533502561 635.2950533502561 3.0102999566398125 0 0 0 0 0 0 0 0 YQE 2.1906 - 151 + NaN NaN 122225.5 NaN 4204 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6304 36.719 NaN 93533 35 0 12074 0.261 -1 RYMEVSGNL 9 24 542.7569651272369 1083.4993773212736 2 542.7581787109375 MULTI HCD FTMS 0 0 0 6299 47157.3359375 0.38076515380135667 12 -0.3220863342285156 5 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 10.799506525563784 0.2670509983294061 1 SGN{I|L} 4 -1 30.918 0 0 2.8535 0 0 694.3106856302588 0 694.3106856302588 0 23.927900303521312 0 0 0 0.5 0 0 0 SGN{I|L} 2.8535 + + 14 NaN NaN 92859.6 NaN 4205 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6305 36.723 NaN 93474 35 0 19643 0.261 -1 FPDSEPPRM 9 29 546.24513017875 1090.4757074242998 2 546.2451171875 MULTI HCD FTMS 0 0 0 6299 37298.59375 0.5962929746897536 1 -0.03653717041015625 6 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 36.506200033944 0.08138327636155518 1 ERDPE 5 -1 58.628 0 0 5.3764 0 0 446.1805592267594 0 446.1805592267594 0 37.658715643802765 0 0 0 1.5 0 0.805462187404089 0 ERDPE 5.3764 - 72 NaN NaN 106637.9 NaN 4206 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6306 36.726 NaN 211130 35 0 64279 0.263 -1 0 45 406.91523338885463 1217.7238707667639 3 406.91534423828125 MULTI HCD FTMS 0 0 0 6299 70330.4453125 0.35734501177588024 -6 0.14974594116210938 7 NaN NaN 1 KY 2 -1 25.217 0 0 2.0708 0 0 0 923.5427842627535 923.5427842627535 9.731975075880328 0 0 0 0 0.4247425010840047 0 0 0 KY 2.0708 - 13 + NaN NaN 111961.2 NaN 4207 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6307 36.729 NaN 50206 35 0 4646.9 0.261 + -1 CEQQEGCL 8 32 483.6864849827683 NaN 0 483.6862487792969 PEAK HCD FTMS 0 0 0 6299 13428.1171875 0.6449528414545669 -2 0.05689239501953125 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))EQQEGCL_ REV__ENST00000482672.1_1_1:161123787-161126762:+|nuORF 1.844237919475145 0.38822285293237185 1 AV 2 -1 9.464 0 0 0.98036 0 0 131.95840730142885 660.2829073541624 792.2413146555912 0 0 0 0 0 0 0 0 0 AV 0.98036 - 4 + NaN NaN 94636.7 NaN 4208 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6308 36.733 NaN 27191 35 0 5866.4 0.261 -1 FFLFFCFETG 10 25 452.87010535934314 NaN 0 452.869873046875 PEAK HCD FTMS 0 0 0 6299 20970.22265625 0.9476552563546962 45 -1.2108268737792969 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))FFLFFC(Carbamidomethyl (C))FETG_ AluJo_dup70939|chr19:16095747-16095917:-|2.609708225140752|0.002178492838753|10.23|514.0|13|2|anti-sense 0.15932191953741626 0.34004793154798674 1 Y 1 -1 4.6041 0 0 0.50946 0 0 529.830498949352 207.80515466861564 737.6356536179676 0 0 0 0 0 0 0 0 0 Y 0.50946 - 1 + NaN NaN 94042.7 NaN 4209 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6309 36.736 NaN 17601 35 0 3328.6 0.261 -1 TSASFCWFM 9 18 568.7298057538449 1135.4450585744896 2 568.7312622070312 MULTI HCD FTMS 0 0 0 6299 4877.5615234375 0.4329962498567407 8 -0.22930908203125 10 Carbamidomethyl (C) _TSASFC(Carbamidomethyl (C))WFM_ tr|U7SLQ9|U7SLQ9_FUSNUL-lysineexporterfamilyproteinLysE/ArgOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01862PE=3SV=1 1.844237919475145 0.33703635659052655 1 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D 3 -1 10.458 0 0 0.92101 0 0 0 758.2967012994749 758.2967012994749 10.45757490560675 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D 0.92101 - 1 + NaN NaN 105457.4 NaN 4210 2097 6299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6311 36.741 NaN 202760 35 0 25922 0.327 + 18297 MPEKEPSVL 9 53 523.2651781793865 1044.5158034255728 2 523.2651977539062 MULTI HCD FTMS 0 0 0 6310 96233.5 0.6968355413569828 -3 0.0934295654296875 1 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 47.594388314883695 0.03493607795751234 1 EPE 3 7 27.703 0 0 2.6522 0 0 671.3862752232827 0 671.3862752232827 0 6.901056208558032 0 0 0 0.8494850021680094 0 0 0 EPE 2.6522 - 38 NaN NaN 122369 NaN 4211 2098 6310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6312 36.746 NaN 80075 35 0 10386 0.261 -1 HPVLKEMEVQ 10 32 613.3160552948816 1224.6175576565631 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6310 49196.3984375 0.1513312191168085 13 -0.3384857177734375 2 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4157808893186 888.4157808893186 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 4 + NaN NaN 94330 NaN 4212 2098 6310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6313 36.749 NaN 83526 35 0 5284.9 0.261 + 722 AQQPTNLPCM 10 38 551.7549758965334 1101.4953988598668 2 551.7548828125 MULTI HCD FTMS 0 0 0 6310 35183.8984375 0.639658906457637 -8 0.20280838012695312 3 Unmodified _AQQPTNLPCM_ REV__ENSG00000154237|ENST00000388948|LRRK1;REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF;REV__ENST00000525395.2_1_15:101598200-101605355:+|nuORF 18.1463463914782 0.3413772152514074 1 EVQM{[CP]|[EA]} 6 -1 59.015 0 0 5.3577 0 0 396.21226699043126 0 396.21226699043126 0 55.9163750790475 0 0 0 2.079689690656103 0 0.5994850021680094 0.3807196863200844 EVQM{[CP]|[EA]} 5.3577 - 100 NaN NaN 88636.9 NaN 4213 2098 6310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6314 36.753 NaN 44717 35 0 5086.4 0.261 + 9843 HYRSSVGHG 9 33 500.24126626379393 998.4679795943879 2 500.24139404296875 MULTI HCD FTMS 0 0 0 6310 12630.8701171875 0.2797501993332028 15 -0.3781623840332031 4 Unmodified _HYRSSVGHG_ REV__ENSG00000146839|ENST00000613979|ZAN 4.3292370932331545 0.3181982124262546 1 QM 2 -1 20.969 0 0 2.1001 0 0 721.3589344709 0 721.3589344709 0 12.870156338638594 0 0 0 0 0 0 0 QM 2.1001 - 4 NaN NaN 87500.7 NaN 4214 2098 6310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6315 36.756 NaN 61827 35 0 5446.5 0.261 -1 TPLPEDNSM 9 36 510.2208371556051 1018.4271213780103 2 510.220458984375 MULTI HCD FTMS 0 0 0 6310 16246.0732421875 0.21089047869105962 10 -0.2556648254394531 5 Oxidation (M) _TPLPEDNSM(Oxidation (M))_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 3.5964929083625545 0.32375295897743744 1 {I|L}{I|L}R 3 -1 23.188 0 0 2.2768 0 0 618.1478465148522 0 618.1478465148522 0 10 0 0 0 0 0 0 0 {I|L}{I|L}R 2.2768 - 15 + NaN NaN 92309.7 NaN 4215 2098 6310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6316 36.759 NaN 17850 35 0 3003.5 0.261 + 9357 HPSKLNEVEQ 10 16 590.8014792362726 1179.588405539345 2 590.802001953125 MULTI HCD FTMS 0 0 0 6310 14896.7119140625 0.920653428225859 -1 0.03653717041015625 6 Unmodified _HPSKLNEVEQ_ ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3 2.9952420565917617 0.4594494122822477 1 S{[ES]|[DT]|[{I|L}C]} 3 8 15.458 0 0 1.3104 0 0 858.445604392775 0 858.445604392775 0 15.45757490560675 0 0 0 0.5 0 0 0 S{[ES]|[DT]|[{I|L}C]} 1.3104 - 2 NaN NaN 85302.6 NaN 4216 2098 6310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6318 36.765 NaN 117070 35 0 8267.1 0.327 + 35831 YYQDTPKQI 9 44 578.2877798658997 NaN 0 578.287841796875 PEAK HCD FTMS 0 0 0 6317 59872.9765625 0.48392016108316915 3 -0.07991790771484375 1 Unmodified _YYQDTPKQI_ ENSG00000048162|ENST00000614830|NOP16 67.83816525789305 0.010655072594219328 1 QDTPK 5 4 42.836 0 0 3.7102 0 0 326.12818149433843 256.1305330865844 582.2587145809229 0 0 0 0 0 1.774227503252014 0 0.3054621874040891 0.4247425010840047 + QDTPK 3.7102 + + 59 + NaN NaN 93213.1 NaN 4217 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6319 36.769 NaN 150930 35 0 19063 0.261 + 2531 DSSNNVILR 9 46 509.26972244499973 1016.5248919567995 2 509.2694091796875 MULTI HCD FTMS 0 0 0 6317 76263.2109375 0.5801746237066309 -3 0.08293914794921875 2 Unmodified _DSSNNVILR_ ENSG00000116985|ENST00000372827|BMP8B;ENSG00000183682|ENST00000331593|BMP8A 82.5293158979368 0.005033931517079822 1 {[DS]|[MA]|[CV]|TT}SN{[NV]|[RG]}{I|L}{I|L}R 9 0 + 55.965 0 0 5.5055 5.5055 87.082 0 0 0 48.88621229653701 16.478174818886373 16.478174818886373 9.208187539523749 0 1.7614393726401687 0 0.4247425010840047 0 + + {[DS]|[MA]|[CV]|TT}SN{[NV]|[RG]}{I|L}{I|L}R;{[DS]|[MA]|[CV]|TT}SGG{[NV]|[RG]}{I|L}{I|L}R 5.5055;4.5996 +;- + 43 + NaN NaN 108446.2 NaN 4218 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6320 36.773 NaN 37719 35 0 7361.8 0.261 + 25036 SAAADSAVRL 10 28 480.75914912319695 959.5037453131939 2 480.7593688964844 MULTI HCD FTMS 0 0 0 6317 14657.1162109375 0.5834626946484145 -1 0.023193359375 3 Unmodified _SAAADSAVRL_ ENSG00000134759|ENST00000358232|ELP2;ENST00000535488.5_1_18:33709896-33718439:+|nuORF;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2 9.5439744041441 0.42184090036563754 1 {[SA]|[TG]}AAWWR{I|L} 8 4 {[SA]|[TG]} + + 15.418 -0.074702 -0.04726 1.6069 1.6069 58.862 0 0 0 0 10.981362441963327 0 0 0 0.4247425010840047 0 0 0 {[SA]|[TG]}AAWWR{I|L} 1.6069 - 10 + NaN NaN 89159.6 NaN 4219 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6321 36.776 NaN 31194 35 0 5939.4 0.261 + -1 CLIELCRMR 9 23 436.8792929717086 NaN 0 436.87921142578125 PEAK HCD FTMS 0 0 0 6317 9836.748046875 0.38752916039753704 -28 0.7308082580566406 4 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))LIELC(Carbamidomethyl (C))RM(Oxidation (M))R_ REV__ENST00000290943.10_1_9:33547948-33547987:+|nuORF 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91564.9 NaN 4220 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6322 36.779 NaN 48162 35 0 4691.9 0.261 -1 SVTVSDPEM 9 24 490.71586455552585 979.4171761778517 2 490.7163391113281 MULTI HCD FTMS 0 0 0 6317 17315.140625 1 0 0 5 Oxidation (M) _SVTVSDPEM(Oxidation (M))_ ENSG00000219545|ENST00000682710|UMAD1;ENST00000406829.2_2_7:7812042-7917166:+|nuORF 10.073929032068715 0.27331982688540024 1 SD 2 -1 15.886 0 0 1.6219 0 0 386.2185200272642 388.1180513971313 774.3365714243955 0 0 0 0 0 0.8807196863200843 0 0 0 SD 1.6219 + + 4 + NaN NaN 86059 NaN 4221 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6323 36.783 NaN 28870 35 0 5366.6 0.261 + 7918 GANGPAPRER 10 24 512.7687132278074 1023.5228735224149 2 512.272216796875 MULTI HCD FTMS 0 0 0 6317 6481.45458984375 0.2888722369151118 -19 0.4884490966796875 6 Unmodified _GANGPAPRER_ REV__ENSG00000171798|ENST00000304613|KNDC1;REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 80081.6 NaN 4222 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6324 36.786 NaN 14793 35 0 4026.6 0.261 -1 PEAWNMSECGG 11 14 627.2335502911242 NaN 0 627.2338256835938 PEAK HCD FTMS 0 0 0 6317 5329.6181640625 0.4615452596953166 11 -0.28884124755859375 7 Carbamidomethyl (C),Oxidation (M) _PEAWNM(Oxidation (M))SEC(Carbamidomethyl (C))GG_ ENSG00000175356|ENST00000649792|SCUBE2;nc|ENSG00000175356|Q9NQ36-3|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82805.8 NaN 4223 2099 6317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6326 36.791 NaN 1418300 35 0 126350 0.327 + 9006 HPEKLATVL 9 101 504.2977957027317 1006.5810384722635 2 504.2980041503906 MULTI HCD FTMS 0 0 0 6325 858615.5 0.3884690215008021 8 -0.20561981201171875 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 96.36657018975838 0.004359138328518304 1 HPEK{I|L}ATV{I|L} 9 0 + 48.286 0 0 4.797 4.797 82.166 0 0 0 2.487063824740659 2.487063824740659 2.487063824740659 2.487063824740659 0 1.6677353201839438 1.0969100130080565 0.7742275032520141 0 + + HPEK{I|L}ATV{I|L};{[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L};{[TV]|[{I|L}S]}[{I|L}A]KEP{I|L}H;{[TV]|[{I|L}S]}[{I|L}A][PG]HTV{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]TVH{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]THV{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]TV{I|L}H;{[TV]|[{I|L}S]}[{I|L}A]KE{I|L}PH;{[TV]|[{I|L}S]}[{I|L}A]K{I|L}EPH;[{I|L}A]{[TV]|[{I|L}S]}KEPH{I|L} 4.797;4.5499;3.9252;3.5622;3.3745;2.8245;2.7498;2.5097;2.1651;1.782 +;-;-;-;-;-;-;-;-;- + 858 + NaN NaN 299373 NaN 4224 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6327 36.796 NaN 117370 35 0 17128 0.262 -1 RYVRKFVLM 9 32 409.9057375497935 1226.6953832495806 3 409.9056091308594 MULTI HCD FTMS 0 0 0 6325 43034.703125 0.3167753112665775 46 -1.2436790466308594 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 2.735195868890462 0.3302822318919627 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7926 0 0 1061.649559130243 0 1061.649559130243 0 10.752574989159953 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7926 + + 7 + NaN NaN 118824.4 NaN 4225 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6328 36.799 NaN 56058 35 0 10949 0.261 + 14671 LGTAAYWAL 9 27 483.2560736368336 NaN 0 483.2553405761719 PEAK HCD FTMS 0 0 0 6325 15845.5703125 0.6205984415222008 -1 0.026851654052734375 3 Unmodified _LGTAAYWAL_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 11.640296217721598 0.23883959125015683 1 {I|L} 1 8 11.99 0 0 1.2431 0 0 622.3084291566767 226.08313928775627 848.3915684444329 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.2431 + + 2 + NaN NaN 90559.2 NaN 4226 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6329 36.803 NaN 67024 35 0 13712 0.261 + 27598 TAGIIGVNR 9 29 450.7664203970004 NaN 0 450.7664794921875 PEAK HCD FTMS 0 0 0 6325 25705.3828125 0.8297715031434292 -2 0.050045013427734375 4 Unmodified _TAGIIGVNR_ CLTC-VMP1|1|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;ENSG00000141367|ENST00000269122|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC 13.90604991867851 0.22786006501039813 1 {I|L}{I|L}G 3 6 18.416 0 0 2.0474 0 0 444.2426358606039 169.06194482974846 613.3045806903524 0 0 0 0 0 1 0 0 0 + {I|L}{I|L}G 2.0474 + + 10 + NaN NaN 94322.5 NaN 4227 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6330 36.806 NaN 62756 35 0 13510 0.261 + -1 YVDRISAM 8 22 485.7369774145013 969.4594018958027 2 485.73748779296875 MULTI HCD FTMS 0 0 0 6325 25896.4453125 0.6294945738236021 -2 0.050045013427734375 5 Oxidation (M) _YVDRISAM(Oxidation (M))_ REV__ENST00000466920.5_1_8:67344751-67356688:+|nuORF 12.531546534597751 0.5015908124873912 1 A{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.1945 0 0 733.3768346124027 0 733.3768346124027 0 25.48455006504028 0 0 0 1 0 0 0 A{M(Oxidation (M))|F} 3.1945 + + 6 + NaN NaN 87334.8 NaN 4228 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6331 36.809 NaN 17289 35 0 6016.4 0.261 + 16299 LQRRNYQIL 9 9 602.3514780041374 1202.6884030750748 2 602.3519287109375 MULTI HCD FTMS 0 0 0 6325 14003.5205078125 0.2223309978942783 11 -0.2884407043457031 6 Unmodified _LQRRNYQIL_ REV__ENSG00000167272|ENST00000357500|POP5;REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF;REV__ENST00000542776.5_1_12:121017123-121019113:-|nuORF;REV__nc|ENSG00000167272|Q969H6-2|POP5 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87961.1 NaN 4229 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6332 36.813 NaN 25437 35 0 3644 0.261 + 21880 QCRLCHCNVP 10 20 586.758625657173 1171.5026983811458 2 586.7578125 MULTI HCD FTMS 0 0 0 6325 10679.7578125 0.6675515613956302 2 -0.053066253662109375 7 Unmodified _QCRLCHCNVP_ ENST00000422941.6_1_14:23607156-23612305:-|nuORF 3.5964929083625545 0.45626689593999237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94747.3 NaN 4230 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6333 36.816 NaN 14675 35 0 2785.4 0.261 + -1 RASFKRWM 8 15 570.294189453125 NaN 0 570.294189453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))RASFKRWM(Oxidation (M))_ REV__ENST00000528974.1_1_11:104897564-104897645:-|nuORF 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101829.7 NaN 4231 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6334 36.819 NaN 29759 35 0 6047.9 0.262 + 26346 SSFWELPE 8 23 497.72845458984375 NaN 0 497.72845458984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SSFWELPE_ ENST00000300853.7_1_19:45912205-45912715:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92847.4 NaN 4232 2100 6325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6336 36.825 NaN 202400 35 0 17785 0.327 + 18980 NAQKEIATL 9 64 494.2770292209345 986.539505508669 2 494.2771301269531 MULTI HCD FTMS 0 0 0 6335 74772.921875 0.07269332928417076 12 -0.294952392578125 1 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 59.368380827593164 0.01846506874148156 1 {I|L}AT{I|L} 4 5 38.66 0 0 3.9187 0 0 570.2773304669937 0 570.2773304669937 0 26.22608801015147 0 0 0 0.9247425010840047 0 0.5 0 + {I|L}AT{I|L} 3.9187 + + 489 NaN NaN 113168.9 NaN 4233 2101 6335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6337 36.829 NaN 156040 35 0 46181 0.261 -1 RYLEKPMEI 9 32 597.8130841336915 1193.611615334183 2 597.8132934570312 MULTI HCD FTMS 0 0 0 6335 88198.0390625 0.18523118907363706 36 -0.9483184814453125 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 17.11289562659939 0.2125047172822487 1 KE 2 -1 22.078 0 0 1.8497 0 0 504.22597578730193 429.22397791080317 933.4499536981051 0 0 0 0 0 1 0 0 0.3494850021680094 KE 1.8497 - 25 + NaN NaN 108634.4 NaN 4234 2101 6335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6338 36.833 NaN 187070 35 0 30096 0.261 -1 VDCGTEETSL 10 37 555.7345023579659 1109.4544517827317 2 555.7347412109375 MULTI HCD FTMS 0 0 0 6335 89920.3984375 0.5045823935642462 -9 0.23971176147460938 3 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 18.1463463914782 0.3413772152514074 1 TS{I|L} 3 -1 41.995 0 0 3.7852 0 0 790.2798329084 0 790.2798329084 0 36.510234424404686 0 0 0 1 0 0.8807196863200843 0 TS{I|L} 3.7852 + + 9 NaN NaN 111594.3 NaN 4235 2101 6335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6339 36.836 NaN 45052 35 0 9160.3 0.261 + 32486 WFDDTFSL 8 22 515.7287984381046 1029.4430439430091 2 515.7289428710938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _WFDDTFSL_ REV__ENST00000322716.7_1_3:37028664-37028739:-|nuORF 2.302733041254933 0.5385759549224092 1 S{I|L} 2 -1 20.969 0 0 2.0369 0 0 811.3143788068375 0 811.3143788068375 0 17.870156338638594 0 0 0 0 0 0 0 S{I|L} 2.0369 + + 2 NaN NaN 105204.2 NaN 4236 2101 6335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6340 36.839 NaN 20493 35 0 4766.5 0.261 + -1 CVYYGWASM 9 21 568.7298057538449 1135.4450585744896 2 569.2301635742188 MULTI HCD FTMS 0 0 0 6335 2378.6650390625 0.21703003132374568 11 -0.27179718017578125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))VYYGWASM_ REV__ENST00000463897.1_1_9:35607239-35607407:+|nuORF 1.844237919475145 0.33703635659052655 1 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D 3 -1 10.458 0 0 0.92101 0 0 0 758.2901095025999 758.2901095025999 4.9730248405664685 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D 0.92101 - 2 + NaN NaN 87270.7 NaN 4237 2101 6335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6342 36.844 NaN 826760 35 0 113460 0.327 + 23640 RPTSVDPAL 9 53 478.2639566527583 954.5133603723166 2 478.263916015625 MULTI HCD FTMS 0 0 0 6341 561531 1 0 0 1 Unmodified _RPTSVDPAL_ ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENST00000599253.1_1_19:48248882-48249496:+|nuORF 41.95555342248728 0.056367691549927025 1 [RP]T[VS]DPA{I|L} 9 0 + 61.22 0 0 6.4138 6.4138 86.719 0 0 0 5.6424927368725974 16.36623162815269 5.6424927368725974 6.488051416994139 0 1.805462187404089 0 0.7302046884880937 0 + + [RP]T[VS]DPA{I|L};[PA][R{I|L}]DEAA{I|L};[PA]D[R{I|L}]EAA{I|L};[PA][R{I|L}]DSSP{I|L};[RP]T[VS]DAP{I|L};[PA]D[R{I|L}]SSP{I|L};[RP]T[TP]EAA{I|L};[RP][{I|L}A]DEAA{I|L};[PA][QA][KG]EAA{I|L};[RP][{I|L}A]DSSP{I|L} 6.4138;5.734;5.4187;5.3357;5.1536;5.0203;4.2221;4.2221;4.1386;3.8238 +;-;-;-;-;-;-;-;-;- + 405 NaN NaN 207502.6 NaN 4238 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6343 36.849 NaN 1117400 35 0 123590 0.261 + 1528 AYVHMVTHF 9 80 560.7657570063983 1119.5169610795965 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6341 524628.625 0.5344278948805294 -8 0.21648406982421875 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 119.92 0 0 10.712 10.712 96.177 0 0 0 98.14835015492783 14.09256854528806 14.09256854528806 13.737125054200234 0 3.1237125054200234 2 0.6109243748081782 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};AYV[MN]AH[PA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[NP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 10.712;9.4847;9.3718;7.2168;6.1817;5.9937;5.8781;5.877;5.4;5.22 +;+;-;-;-;-;-;-;-;- + 1965 + NaN NaN 259907.5 NaN 4239 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6344 36.852 NaN 122120 35 0 24939 0.262 + 25109 SAEQAKVVL 9 39 472.77422382831946 943.533894723439 2 472.7740478515625 MULTI HCD FTMS 0 0 0 6341 89777.5234375 0.49447968740977155 3 -0.08966064453125 3 Unmodified _SAEQAKVVL_ ENSG00000111678|ENST00000229281|C12orf57 24.990960013464015 0.14443998892849796 1 WKVV{I|L} 5 5 49.068 0 0 5.2005 0 0 300.134569236525 0 300.134569236525 0 31.620768972555595 0 0 0 1.2614393726401687 0 0 0 WKVV{I|L} 5.2005 - 84 NaN NaN 118013.8 NaN 4240 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6345 36.856 NaN 189670 35 0 19708 0.261 + 29777 VEEETVEVLT 10 25 574.2907481779872 1146.5669434227743 2 574.2908325195312 MULTI HCD FTMS 0 0 0 6341 93372.625 0.021135103317350603 48 -1.3001670837402344 4 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 24.020572477871973 0.2864316864133941 1 EVT{I|L} 4 -1 51.23 0 0 4.4681 0 0 686.3143788068375 0 686.3143788068375 0 22.302046884880937 0 0 0 0.8807196863200843 0 1.3494850021680094 0 EVT{I|L} 4.4681 - 38 NaN NaN 126968.5 NaN 4241 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6346 36.859 NaN 164700 35 0 24999 0.263 -1 0 42 441.7879524798002 881.5613520264004 2 441.7879638671875 MULTI HCD FTMS 0 0 0 6341 54761.08984375 0.7445983467485445 4 -0.1094970703125 5 NaN NaN 1 [Y{M(Oxidation (M))|F}]{I|L} 3 -1 10.458 0 0 1.1863 0 0 0 455.3556079680598 455.3556079680598 3.4678748622465623 0 0 0 0 0 0 0 0 [Y{M(Oxidation (M))|F}]{I|L} 1.1863 - 14 NaN NaN 107049.7 NaN 4242 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6347 36.862 NaN 118520 35 0 12660 0.261 + 27575 TADVTSAVM 9 42 455.7127617615889 909.4109705899779 2 455.7127990722656 MULTI HCD FTMS 0 0 0 6341 49406.3203125 0.6195701596076688 -2 0.053066253662109375 6 Oxidation (M) _TADVTSAVM(Oxidation (M))_ ENSG00000136021|ENST00000360820|SCYL2 85.27202061508552 0.004649858145912257 1 [TA]DVTSAV{M(Oxidation (M))|F} 9 0 + 78.95 0 0 8.6815 8.6815 97.994 0 0 0 4.137342758552691 73.46578144253336 4.137342758552691 78.95033150757364 0 2.8807196863200843 0 1.1549471895720984 0 + + [TA]DVTSAV{M(Oxidation (M))|F} 8.6815 + + 138 NaN NaN 104027 NaN 4243 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6348 36.866 NaN 94743 35 0 20640 0.261 + 18469 MPYGSRENSL 10 37 577.2692280767268 1152.5239032202535 2 577.2697143554688 MULTI HCD FTMS 0 0 0 6341 31625.015625 0.864241092401909 -1 0.019901275634765625 7 Unmodified _MPYGSRENSL_ ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9 8.155526934196011 0.43213520406898465 1 MPY 3 7 30.005 0 0 2.6034 0 0 0 758.3449208629924 758.3449208629924 30.00508444608478 0 0 0 0 0.3807196863200844 0 0 0 + MPY 2.6034 + + 5 + NaN NaN 99401 NaN 4244 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6349 36.869 NaN 48470 35 0 9039.5 0.262 + 14672 LGTAAYWAL 9 26 483.2560736368336 NaN 0 483.2565612792969 PEAK HCD FTMS 0 0 0 6341 17884.302734375 0.7004462563211613 1 -0.033214569091796875 8 Unmodified _LGTAAYWAL_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 11.640296217721598 0.23883959125015683 1 {I|L} 1 8 10.485 0 0 1.087 0 0 622.3072084535517 226.08315454654533 848.390363000097 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.087 + + 2 + NaN NaN 104917.9 NaN 4245 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6350 36.872 NaN 55033 35 0 8668.8 0.261 + 20048 NYIKRNWRI 9 35 421.5752339534141 1261.7038724604424 3 421.57513427734375 MULTI HCD FTMS 0 0 0 6341 19195.7578125 0.41087892521784064 30 -0.7856788635253906 9 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 2.735195868890462 0.3302822318919627 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93309.6 NaN 4246 2102 6341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6352 36.878 NaN 424780 35 0 122870 0.327 -1 0 57 406.91523338885463 1217.7238707667639 3 406.91534423828125 MULTI HCD FTMS 0 0 0 6351 196813.84375 1 0 0 1 NaN NaN 1 KY 2 -1 25.969 0 0 2.1326 0 0 0 923.5427528522293 923.5427528522293 1.020599913279625 0 0 0 0 0.5 0 0 0 KY 2.1326 - 30 + NaN NaN 142707.2 NaN 4247 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6353 36.882 NaN 183050 35 0 20992 0.261 + 18547 MVDGKPVNL 9 50 494.7601325759539 987.5057122187078 2 494.7603454589844 MULTI HCD FTMS 0 0 0 6351 92761.6328125 1 0 0 2 Oxidation (M) _M(Oxidation (M))VDGKPVNL_ ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 43.77239144664712 0.04802738721622131 1 [{M(Oxidation (M))|F}V]D[KG][VP]N{I|L} 9 0 + 38.094 0 0 3.8576 3.8576 82.775 0 0 0 5.6424927368726046 17.917112166456455 5.6424927368726046 6.760912590556817 0 1.774227503252014 0 0 0.5 + + [{M(Oxidation (M))|F}V]D[KG][VP]N{I|L};[{M(Oxidation (M))|F}V]D[KG][VP]{I|L}N 3.8576;3.173 +;- + 179 NaN NaN 123171.3 NaN 4248 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6354 36.886 NaN 139550 35 0 12789 0.261 -1 MQCKDCKF 8 46 530.2232162851822 NaN 0 530.2365112304688 PEAK HCD FTMS 0 0 0 6351 4002.95849609375 1 0 0 3 Carbamidomethyl (C) _MQC(Carbamidomethyl (C))KDCKF_ ENSG00000115825|ENST00000234179|PRKD3;ENST00000475912.1_1_2:37509613-37518050:-|nuORF;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;nc|ENSG00000115825|O94806-2|PRKD3 11.640296217721598 0.38822285293237185 1 {M(Oxidation (M))|F}DTWK 5 -1 11.638 0 0 1.0996 0 0 216.0468372710539 162.05608545474846 378.1029227258024 0 0 0 0 0 0.3935078169319297 0 0 0 {M(Oxidation (M))|F}DTWK 1.0996 - 35 + NaN NaN 100211.9 NaN 4249 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6355 36.889 NaN 95308 35 0 24327 0.261 -1 FPDSEPPRM 9 33 546.24513017875 1090.4757074242998 2 546.2448120117188 MULTI HCD FTMS 0 0 0 6351 37520.39453125 0.5998389058990254 7 -0.17570877075195312 4 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 38.175570920033316 0.07371992880350783 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DSERDP 8 -1 55.662 0 0 5.1044 0 0 0 144.0459904922225 144.0459904922225 50.17728766960431 0 0 0 0 0.5 1.3010299956639813 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DSERDP 5.1044 - 84 NaN NaN 110984.1 NaN 4250 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6356 36.892 NaN 69575 35 0 4975.4 0.262 + 23922 RTNPNSGDFRF 11 38 437.5458490854042 1309.6157178564126 3 437.5462646484375 MULTI HCD FTMS 0 0 0 6351 26770.306640625 0.8934692910931331 -2 0.0531158447265625 5 Unmodified _RTNPNSGDFRF_ ENSG00000131263|ENST00000332687|RLIM 3.3557259375316324 0.404203592500566 1 {M(Oxidation (M))|F} 1 10 15.485 0 0 1.1824 0 0 1144.536690612075 0 1144.536690612075 0 9.030899869919438 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1824 + + 9 + NaN NaN 107960.2 NaN 4251 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6357 36.896 NaN 24538 35 0 5291.6 0.261 -1 TATLHEPIM 9 19 514.7577109277235 1027.5008689222468 2 514.75927734375 MULTI HCD FTMS 0 0 0 6351 17112.17578125 0.09752187605297483 20 -0.503692626953125 6 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.9936 0 0 862.4545717804484 0 862.4545717804484 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.9936 + + 1 + NaN NaN 94930.3 NaN 4252 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6358 36.899 NaN 22613 35 0 3404.6 0.261 + 19077 NEPDEIWDD 9 23 566.7254173937089 1131.4362818542177 2 566.7255249023438 MULTI HCD FTMS 0 0 0 6351 15223.2861328125 0.6696323635034018 -2 0.0531158447265625 7 Unmodified _NEPDEIWDD_ ENSG00000218819|ENST00000405799|TDRD15 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84779.3 NaN 4253 2103 6351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6360 36.904 NaN 199840 35 0 28255 0.327 + 18298 MPEKEPSVL 9 46 523.2651781793865 1044.5158034255728 2 523.2653198242188 MULTI HCD FTMS 0 0 0 6359 109490.09375 0.7928277445121298 3 -0.06954193115234375 1 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 55.50274090549119 0.023872834264864425 1 {M(Oxidation (M))|F}PE 3 6 28.79 0 0 2.7563 0 0 0 668.361512652261 668.361512652261 4.0754699839622965 0 0 0 0 0.9247425010840047 0 0.28872548999643577 0 + {M(Oxidation (M))|F}PE 2.7563 + + 40 + NaN NaN 128536.2 NaN 4254 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6361 36.909 NaN 138700 35 0 17188 0.261 + 2532 DSSNNVILR 9 41 509.26972244499973 1016.5248919567995 2 509.26971435546875 MULTI HCD FTMS 0 0 0 6359 72327.4609375 0.5502332896455105 2 -0.04970550537109375 2 Unmodified _DSSNNVILR_ ENSG00000116985|ENST00000372827|BMP8B;ENSG00000183682|ENST00000331593|BMP8A 82.5293158979368 0.005033931517079822 1 {[DS]|[MA]|[CV]|TT}SN{[NV]|[RG]}{I|L}{I|L}R 9 0 + 56.973 0 0 5.6047 5.6047 87.284 0 0 0 49.498643667695745 16.478174818886373 16.478174818886373 9.208187539523749 0 1.610924374808178 0 0.5 0 + + {[DS]|[MA]|[CV]|TT}SN{[NV]|[RG]}{I|L}{I|L}R;{[DS]|[MA]|[CV]|TT}SGG{[NV]|[RG]}{I|L}{I|L}R 5.6047;4.6988 +;- + 44 + NaN NaN 106572.3 NaN 4255 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6362 36.912 NaN 95040 35 0 5597.3 0.261 + 9297 HPPRHQDDT 9 41 551.7549758965334 1101.4953988598668 2 551.7546997070312 MULTI HCD FTMS 0 0 0 6359 47711.9453125 0.8674243650905926 -2 0.05979156494140625 3 Unmodified _HPPRHQDDT_ ENST00000586392.1_1_19:34887279-34887507:+|nuORF 14.838274106304384 0.23215694253501695 1 MSMQVE 6 8 62.484 0 0 5.6727 0 0 0 393.18854700260005 393.18854700260005 56.99986893552975 0 0 0 0 2.2302046884880937 0 0 0.3807196863200844 MSMQVE 5.6727 - 92 + NaN NaN 93119.3 NaN 4256 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6363 36.916 NaN 67606 35 0 17838 0.261 + -1 YVDRISAM 8 18 485.7369774145013 969.4594018958027 2 485.7373962402344 MULTI HCD FTMS 0 0 0 6359 29078.4609375 0.7068434742455668 2 -0.04970550537109375 4 Oxidation (M) _YVDRISAM(Oxidation (M))_ REV__ENST00000466920.5_1_8:67344751-67356688:+|nuORF 12.531546534597751 0.5015908124873912 1 A{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.1945 0 0 733.3765599541996 0 733.3765599541996 0 30.969100130080562 0 0 0 1 0 0 0 A{M(Oxidation (M))|F} 3.1945 + + 4 + NaN NaN 89316 NaN 4257 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6364 36.919 NaN 56142 35 0 5669.5 0.261 -1 HPVLKEMEVQ 10 24 613.3160552948816 1224.6175576565631 2 613.3163452148438 MULTI HCD FTMS 0 0 0 6359 27549.423828125 0.08474376227301059 19 -0.4771156311035156 5 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2622 0 0 891.43754775215 0 891.43754775215 0 15.45757490560675 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.2622 - 3 NaN NaN 102908 NaN 4258 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6365 36.922 NaN 49442 35 0 4930.7 0.261 + 21972 QEQEIEQRL 9 34 586.7987531902068 1171.5829534472134 2 586.7987670898438 MULTI HCD FTMS 0 0 0 6359 12934.7724609375 0.6039313331914379 1 -0.02986907958984375 6 Unmodified _QEQEIEQRL_ ENSG00000143614|ENST00000368655|GATAD2B;ENSG00000167491|ENST00000683918|GATAD2A;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A 7.608950283845883 0.29333554423920943 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}QE{I|L}E 6 3 22.396 0 0 1.9116 0 0 0 412.23114954166255 412.23114954166255 14.436974992327123 0 0 0 0 0 0 0 0 + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}QE{I|L}E 1.9116 + + 19 + NaN NaN 102623 NaN 4259 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6366 36.925 NaN 120560 35 0 26129 0.262 + 9614 HSSPEDPVL 9 31 490.73770441722377 979.4608559012476 2 490.7375793457031 MULTI HCD FTMS 0 0 0 6359 37598.109375 0.6017548648402965 -1 0.026576995849609375 7 Unmodified _HSSPEDPVL_ ENSG00000185133|ENST00000331075|INPP5J 7.289230182591677 0.29575926068275815 1 PV{I|L} 3 6 31.198 0 0 3.1852 0 0 652.2458134304665 0 652.2458134304665 0 31.197887582883936 0 0 0 0.5 0 0 0 + PV{I|L} 3.1852 + + 3 NaN NaN 95433.9 NaN 4260 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6367 36.929 NaN 52468 35 0 8588.8 0.261 + 14436 LEQKRILYEA 10 35 421.5752339534141 1261.7038724604424 3 421.5752258300781 MULTI HCD FTMS 0 0 0 6359 13128.353515625 0.28100811830764283 32 -0.8420677185058594 8 Unmodified _LEQKRILYEA_ REV__ENSG00000151838|ENST00000537690|CCDC175 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92469.4 NaN 4261 2104 6359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6369 36.934 NaN 837470 35 0 71866 0.327 + 9007 HPEKLATVL 9 85 504.2977957027317 1006.5810384722635 2 504.2979431152344 MULTI HCD FTMS 0 0 0 6368 459856.15625 0.20805572581622095 13 -0.3012809753417969 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 70.33199760932243 0.0089807860198535 1 {[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}ATV 8 5 37.092 0 0 3.685 0 0 0 146.0823873619586 146.0823873619586 0.24941026948689426 0 0 0 0 0 1.5228787452803376 1.653598431600422 0 {[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}ATV 3.685 - 300 NaN NaN 227531.2 NaN 4262 2105 6368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6370 36.939 NaN 748060 35 0 60873 0.261 + 26884 SYISRTNQL 9 76 541.2853828772801 1080.55621282136 2 541.2855834960938 MULTI HCD FTMS 0 0 0 6368 342159.3125 0.3589470412787042 -4 0.10956192016601562 2 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 121.34585337138759 0.001129813327125052 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L} 9 0 + 87.877 0 0 8.1326 8.1326 91.637 0 0 0 0.29885926180398315 0.29885926180398315 0.29885926180398315 9.208187539523749 0 3.004432191740108 1.0969100130080565 0.6237125054200234 1.555462187404089 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTN[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGG[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRT[VG][QA] 8.1326;7.2804;7.2527;6.4046;4.3554 +;-;-;-;- + 604 + NaN NaN 189964.5 NaN 4263 2105 6368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6371 36.942 NaN 38618 35 0 5465 0.261 + 1651 CCHLCHSDDM 10 25 582.1901663935785 1162.3657798539568 2 582.1893310546875 MULTI HCD FTMS 0 0 0 6368 16379.3720703125 0.8764901528828766 -4 0.10956192016601562 3 Unmodified _CCHLCHSDDM_ REV__ENSG00000099139|ENST00000674117|PCSK5;REV__nc|ENSG00000099139|Q92824|PCSK5 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88015.8 NaN 4264 2105 6368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6372 36.945 NaN 60031 35 0 7277 0.261 -1 SPDSGVYEM 9 35 500.70030917361953 NaN 0 500.700439453125 PEAK HCD FTMS 0 0 0 6368 9290.6845703125 0.5392696258285459 11 -0.2516365051269531 4 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 6.723162845929126 0.26266733336404485 1 EY 2 -1 11.454 0 0 1.1461 0 0 165.04971395095157 539.2114945807622 704.2612085317137 0 0 0 0 0 0.5 0 0 0 EY 1.1461 - 7 + NaN NaN 90443.6 NaN 4265 2105 6368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6373 36.949 NaN 14665 35 0 3329.1 0.261 + 2142 DGEQDNYSYY 10 16 627.2336775478924 NaN 0 627.233642578125 PEAK HCD FTMS 0 0 0 6368 6621.08251953125 0.737830242167614 -2 0.056446075439453125 5 Unmodified _DGEQDNYSYY_ tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87712.8 NaN 4266 2105 6368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6375 36.954 NaN 411890 35 0 64220 0.327 + 35157 YVHMVTHF 8 61 525.247264992183 1048.4799770511659 2 525.2472534179688 MULTI HCD FTMS 0 0 0 6374 118230.6875 0.9647243106251626 -4 0.1094970703125 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 86.12129899796855 0.01802651791127688 1 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 83.624 0 0 7.9758 7.9758 95.886 0 0 0 22.064856298445576 66.63479704297593 22.064856298445576 42.492822134202015 0 2.274227503252014 2 0.7059771852360797 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[YV][VP][C(Carbamidomethyl (C))Q]H{M(Oxidation (M))|F} 7.9758;3.923 +;- + 280 NaN NaN 149387.8 NaN 4267 2106 6374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6376 36.958 NaN 50718 35 0 6962.4 0.261 -1 ICDCNLKWL 9 27 582.780650287973 1163.546747642746 2 582.7811889648438 MULTI HCD FTMS 0 0 0 6374 27874.333984375 0.585379174146098 -4 0.1094970703125 2 Carbamidomethyl (C) _IC(Carbamidomethyl (C))DCNLKWL_ ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 6.2057823575117 0.30397260197431997 1 WQ{I|L} 3 -1 31.198 0 0 2.6813 0 0 718.277147361525 0 718.277147361525 0 21.46591250700361 0 0 0 0.5 0 0 0 WQ{I|L} 2.6813 - 14 NaN NaN 102405.7 NaN 4268 2106 6374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6377 36.962 NaN 14199 35 0 5440.6 0.261 -1 KMDICEGRL 9 11 569.2745361328125 NaN 0 569.2745361328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _KM(Oxidation (M))DIC(Carbamidomethyl (C))EGRL_ ENSG00000070159|ENST00000374541|PTPN3 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74768.3 NaN 4269 2106 6374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6378 36.965 NaN 29918 35 0 6080.9 0.261 + -1 RFPLMLMT 8 22 512.7687132278074 1023.5228735224149 2 512.2725830078125 MULTI HCD FTMS 0 0 0 6374 11929.517578125 0.5316871977335248 -12 0.32598114013671875 4 Oxidation (M) _RFPLMLM(Oxidation (M))T_ REV__COL11A1|p.I509Sfs*19|1|0.36|ENSG00000060718|chr1:103014559-103014559|G/-|frameshift_variant;REV__ENSG00000060718|ENST00000370096|COL11A1;REV__ENSG00000130635|ENST00000371817|COL5A1;REV__nc|ENSG00000060718|P12107-2|COL11A1;REV__nc|ENSG00000060718|P12107-3|COL11A1;REV__nc|ENSG00000060718|P12107-4|COL11A1;REV__nc|ENSG00000130635|P20908-2|COL5A1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85966.3 NaN 4270 2106 6374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6379 36.969 NaN 21942 35 0 4063 0.261 + 17223 LYNQRLRLQ 9 19 602.3514780041374 1202.6884030750748 2 602.35205078125 MULTI HCD FTMS 0 0 0 6374 5599.96923828125 0.08890955301059658 16 -0.3975677490234375 5 Unmodified _LYNQRLRLQ_ ENSG00000128185|ENST00000248879|DGCR6L;ENSG00000183628|ENST00000331444|DGCR6;nc|ENSG00000183628|Q14129-2|DGCR6 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97885.6 NaN 4271 2106 6374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6381 36.974 NaN 369470 35 0 48343 0.327 + 23641 RPTSVDPAL 9 43 478.2639566527583 954.5133603723166 2 478.2638244628906 MULTI HCD FTMS 0 0 0 6380 223672.21875 0.39832568237550553 5 -0.12256240844726562 1 Unmodified _RPTSVDPAL_ ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENST00000599253.1_1_19:48248882-48249496:+|nuORF 41.95555342248728 0.056367691549927025 1 [RP]T[VS]DPA{I|L} 9 0 + 64.983 0 0 6.808 6.808 94.648 0 0 0 5.6424927368725974 47.747811774468474 5.6424927368725974 64.98319373273603 0 1.8494850021680094 0 0.7614393726401688 0 + + [RP]T[VS]DPA{I|L} 6.808 + + 128 NaN NaN 140358.5 NaN 4272 2107 6380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6382 36.978 NaN 325720 35 0 44424 0.261 -1 MEEEAGQTSI 10 53 555.7345023579659 1109.4544517827317 2 555.7347412109375 MULTI HCD FTMS 0 0 0 6380 144652.0625 0.811705521756407 -3 0.06954193115234375 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 22.65808497894818 0.29917593477267174 1 SQTS{I|L} 5 -1 51.049 0 0 4.6013 0 0 575.1891346662125 0 575.1891346662125 0 21.83143669542098 0 0 0 1.5387254899964358 0 0.8494850021680094 0 SQTS{I|L} 4.6013 - 133 NaN NaN 134909.2 NaN 4273 2107 6380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6383 36.982 NaN 113760 35 0 35951 0.261 -1 RYLEKPMEI 9 28 597.8130841336915 1193.611615334183 2 597.8128662109375 MULTI HCD FTMS 0 0 0 6380 57039.1328125 0.11979207822411425 42 -1.1442718505859375 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 10.799506525563784 0.2670509983294061 1 KE 2 -1 19.464 0 0 1.6307 0 0 504.2260085000017 429.2225435846313 933.448552084633 0 0 0 0 0 1 0 0 0 KE 1.6307 - 20 + NaN NaN 109156 NaN 4274 2107 6380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6384 36.985 NaN 126520 35 0 14853 0.264 -1 RYVRKFVLM 9 47 409.9057375497935 1226.6953832495806 3 409.9055480957031 MULTI HCD FTMS 0 0 0 6380 38085.26171875 0.2803428340282317 53 -1.4644622802734375 4 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 2.735195868890462 0.3302822318919627 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7926 0 0 1061.649543871454 0 1061.649543871454 0 15 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7926 + + 10 + NaN NaN 103311.2 NaN 4275 2107 6380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6385 36.988 NaN 116600 35 0 7142.8 0.261 -1 EMEEKYYRF 9 55 437.52887804977274 1309.5648047495183 3 437.52911376953125 MULTI HCD FTMS 0 0 0 6380 32755.58984375 0.9391728401366944 -1 0.01983642578125 5 Oxidation (M) _EM(Oxidation (M))EEKYYRF_ ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 9.5439744041441 0.27789851728676895 1 EEE 3 -1 14.705 0 0 1.1229 0 0 904.4439449184913 0 904.4439449184913 0 0.5483121601221104 0 0 0 0 0 0.4247425010840047 0 EEE 1.1229 - 24 NaN NaN 105412.5 NaN 4276 2107 6380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6386 36.992 NaN 93583 35 0 13904 0.261 -1 MEDAHLDAI 9 42 515.7287984381046 1029.4430439430091 2 515.7291259765625 MULTI HCD FTMS 0 0 0 6380 14901.771484375 0.41987248593758375 -9 0.23244476318359375 6 Oxidation (M) _M(Oxidation (M))EDAHLDAI_ ENSG00000163050|ENST00000366777|COQ8A;ENST00000478406.5_1_1:227171537-227174435:+|nuORF;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-2|COQ8A;nc|ENSG00000163050|Q8NI60-3|COQ8A;nc|ENSG00000163050|Q8NI60-4|COQ8A 7.910154910731844 0.2910521888787154 1 S{I|L} 2 -1 21.722 0 0 2.11 0 0 811.3122425763687 0 811.3122425763687 0 11.264100213633766 0 0 0 0 0 0.4247425010840047 0 S{I|L} 2.11 - 12 NaN NaN 105018.9 NaN 4277 2107 6380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6388 36.997 NaN 1770600 35 0 204190 0.327 + 1529 AYVHMVTHF 9 97 560.7657570063983 1119.5169610795965 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6387 909330.625 0.92631554686736 -2 0.043056488037109375 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 161.8943921545576 8.236690082142223E-09 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 115.98 0 0 10.36 10.36 95.078 0 0 0 72.59241481821292 12.98332479720628 12.98332479720628 10.228787452803374 0 3.1549471895720984 1.6989700043360187 0.8851518780601924 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]AYA{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};[HV]YA{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN]PA{M(Oxidation (M))|F} 10.36;9.4465;9.2601;6.5705;6.5312;6.4855;6.4403;6.3798;6.2611;6.0956 +;-;+;-;-;-;-;-;-;- + 4720 + NaN NaN 369812.8 NaN 4278 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6389 37.001 NaN 180800 35 0 18099 0.261 + 27884 TEEDLDLVTL 10 38 574.2907481779872 1146.5669434227743 2 574.2908325195312 MULTI HCD FTMS 0 0 0 6387 76652.4921875 0.01735046371369791 54 -1.5076332092285156 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 1 EVT{I|L} 4 6 47.423 0 0 4.1361 0 0 686.3110829084 0 686.3110829084 0 25.996075289514096 0 0 0 0.5 0 1.3494850021680094 0 EVT{I|L} 4.1361 - 22 NaN NaN 121370.1 NaN 4279 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6390 37.005 NaN 270840 35 0 33377 0.261 -1 ECHVTPEL 8 46 492.72626918179 983.43798543038 2 492.72650146484375 MULTI HCD FTMS 0 0 0 6387 100169.015625 0.6721673565202566 -2 0.043056488037109375 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))HVTPEL_ ENSG00000023516|ENST00000025301|AKAP11 30.224811164608877 0.3565035853404968 1 E{I|L} 2 -1 29.024 0 0 2.9513 0 0 723.3019051818209 0 723.3019051818209 0 12.909393809954889 0 0 0 0.3807196863200844 0 0.4247425010840047 0 E{I|L} 2.9513 + + 102 NaN NaN 125652.6 NaN 4280 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6391 37.008 NaN 54186 35 0 6104.8 0.261 + 27576 TADVTSAVM 9 29 455.7127617615889 909.4109705899779 2 455.712890625 MULTI HCD FTMS 0 0 0 6387 34616.34765625 0.4340994412609822 4 -0.09934234619140625 4 Oxidation (M) _TADVTSAVM(Oxidation (M))_ ENSG00000136021|ENST00000360820|SCYL2 64.23631603340823 0.01165516075559909 1 TSAV{M(Oxidation (M))|F} 5 4 52.691 0 0 5.7939 0 0 386.17947752532785 0 386.17947752532785 0 47.2062251842808 0 0 0 1.774227503252014 0 0 0 + TSAV{M(Oxidation (M))|F} 5.7939 + + 39 + NaN NaN 86518.9 NaN 4281 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6392 37.012 NaN 70317 35 0 10386 0.261 -1 FGDEEKKM 8 30 500.2262509492773 998.4379489653546 2 500.2270812988281 MULTI HCD FTMS 0 0 0 6387 11076.943359375 0.5815406565096742 -4 0.09276199340820312 5 Oxidation (M) _FGDEEKKM(Oxidation (M))_ ENSG00000147050|ENST00000611820|KDM6A;KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A 7.289230182591677 0.5311777711368266 1 EY 2 -1 6.1979 0 0 0.62076 0 0 164.1000105882046 539.2111910455686 703.3112016337732 0 0 0 0 0 0 0 0 0 EY 0.62076 - 14 + NaN NaN 91119.2 NaN 4282 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6393 37.015 NaN 16162 35 0 5895.7 0.261 + -1 KRRCLWGRM 9 11 639.8381725935947 1277.6617922539892 2 639.8388671875 MULTI HCD FTMS 0 0 0 6387 5961.353515625 0.46378444949003605 1 -0.02988433837890625 6 Carbamidomethyl (C),Oxidation (M) _KRRC(Carbamidomethyl (C))LWGRM(Oxidation (M))_ REV__ENSG00000113319|ENST00000265080|RASGRF2;REV__ENST00000502677.1_1_5:80366283-80383248:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87339.2 NaN 4283 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6394 37.018 NaN 35050 35 0 6844.8 0.261 + 22446 QQLEEERIQ 9 20 586.7987531902068 1171.5829534472134 2 587.3015747070312 MULTI HCD FTMS 0 0 0 6387 5774.0107421875 0.38977849370710643 3 -0.08282089233398438 7 Unmodified _QQLEEERIQ_ ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1 1.6526216038709556 0.33848895094777925 1 E 1 8 3.9794 0 0 0.33966 0 0 627.2859696599072 412.23215662174067 1039.518126281648 0 0 0 0 0 0 0 0 0 + E 0.33966 + + 1 + NaN NaN 87005.1 NaN 4284 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6395 37.022 NaN 69068 35 0 9907.8 0.261 + 26426 STGPEESPCL 10 30 510.2208371556051 1018.4271213780103 2 510.2207946777344 MULTI HCD FTMS 0 0 0 6387 11490.4892578125 0.1491581838792863 20 -0.5103759765625 8 Unmodified _STGPEESPCL_ REV__tr|Q8AZK8|Q8AZK8_EBVB9BWRF1(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BCRF2PE=4SV=1 3.5964929083625545 0.45626689593999237 1 {I|L} 1 -1 6.9897 0 0 0.68632 0 0 132.0042915884431 770.3144625299436 902.3187541183868 0 0 0 0 0 0 0 0 0 {I|L} 0.68632 + + 6 + NaN NaN 93067.9 NaN 4285 2108 6387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6397 37.027 NaN 368290 35 0 103630 0.327 + 22181 QLEERKRLF 9 53 406.9021420523679 NaN 0 406.91546630859375 PEAK HCD FTMS 0 0 0 6396 5319.0537109375 0.7830142025352778 -1 0.02988433837890625 1 Unmodified _QLEERKRLF_ REV__ENSG00000163092|ENST00000409195|XIRP2;REV__nc|ENSG00000163092|A4UGR9-2|XIRP2;REV__nc|ENSG00000163092|A4UGR9-3|XIRP2;REV__nc|ENSG00000163092|A4UGR9|XIRP2;REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant 2.0860074813731053 0.28513834112692665 1 Y 1 -1 3.0989 0 0 0.38174 0 0 282.46607502094827 363.2506502740844 645.7167252950327 0 0 0 0 0 0 0 0 0 Y 0.38174 - 1 + NaN NaN 139278.6 NaN 4286 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6398 37.031 NaN 80596 35 0 7292.1 0.261 -1 SEMDTSVKF 9 45 530.2367011507084 1058.4588493682168 2 530.2366943359375 MULTI HCD FTMS 0 0 0 6396 51133.8984375 0.5607177137115829 5 -0.11586380004882812 2 Oxidation (M) _SEM(Oxidation (M))DTSVKF_ ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 36.506200033944 0.08138327636155518 1 {[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}DT[VS]K{M(Oxidation (M))|F} 9 -1 + 31.519 0 0 2.9778 2.9778 87.914 0 0 0 21.78720297285992 2.8078028861395445 2.8078028861395445 31.519178048740248 0 1.5924778212679485 0 0 0.3252574989159953 {[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}DT[VS]K{M(Oxidation (M))|F} 2.9778 + + 29 + NaN NaN 108671.1 NaN 4287 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6399 37.035 NaN 139900 35 0 15669 0.261 + 4159 ETPPRWTE 8 44 508.2456725047597 1014.4767920763194 2 509.26287841796875 MULTI HCD FTMS 0 0 0 6396 3015.655517578125 0.4378506190178095 -4 0.09277725219726562 3 Unmodified _ETPPRWTE_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000183054|Q99666-2|RGPD5 7.289230182591677 0.5311777711368266 1 EE 2 6 22.959 0 0 2.2631 0 0 0 753.3530367486936 753.3530367486936 12.501225267834 0 0 0 0 0 0 0.3494850021680094 0 EE 2.2631 - 37 + NaN NaN 104592.1 NaN 4288 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6400 37.038 NaN 173450 35 0 35383 0.261 + 25229 SAQPAEQEL 9 39 486.73526752658273 971.4559821199655 2 486.73504638671875 MULTI HCD FTMS 0 0 0 6396 64658.67578125 0.5708867312442533 -3 0.07294082641601562 4 Unmodified _SAQPAEQEL_ ENSG00000167705|ENST00000301336|RILP 21.590151480376914 0.17382222009858564 1 EQ{[QN]|[E{I|L}]|[KN]} 4 5 23.188 0 0 2.3869 0 0 454.217088767775 0 454.217088767775 0 17.703037561203843 0 0 0 1 0 0 0 + EQ{[QN]|[E{I|L}]|[KN]} 2.3869 + + 46 NaN NaN 107497.6 NaN 4289 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6401 37.041 NaN 31142 35 0 4178.1 0.261 + 14917 LLCMRPVL 8 23 472.77422382831946 943.533894723439 2 472.7740478515625 MULTI HCD FTMS 0 0 0 6396 12035.3681640625 0.06628880882162218 10 -0.24164199829101562 5 Unmodified _LLCMRPVL_ REV__ENST00000354105.8_1_10:102016116-102016164:-|nuORF 9.347437153973935 0.5250182646323369 1 V{I|L} 2 -1 25.969 0 0 2.7523 0 0 713.3733998029312 0 713.3733998029312 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.7523 + + 5 NaN NaN 89453.3 NaN 4290 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6402 37.045 NaN 44415 35 0 8742.8 0.261 -1 PPSREEMT 8 20 481.71612515155437 961.4176973699088 2 481.7158203125 MULTI HCD FTMS 0 0 0 6396 13991.71875 0.009724813420679093 188 -5.151882171630859 6 Oxidation (M) _PPSREEM(Oxidation (M))T_ nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 2.0597508629832335 0.5389364538378849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85939.1 NaN 4291 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6403 37.048 NaN 33212 35 0 7385.8 0.261 -1 SQAMRCLE 8 27 497.7262455731734 993.4379382131468 2 497.7265930175781 MULTI HCD FTMS 0 0 0 6396 5532.98779296875 0.33699839797597997 -3 0.07294082641601562 7 Carbamidomethyl (C) _SQAMRC(Carbamidomethyl (C))LE_ ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145667587-145667875:-|nuORF;nc|ENSG00000160949|Q96HA7-2|TONSL 1.844237919475145 0.5392561982033289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105885.5 NaN 4292 2109 6396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6405 37.053 NaN 103520 35 0 18896 0.327 -1 FPDSEPPRM 9 34 546.24513017875 1090.4757074242998 2 546.2447509765625 MULTI HCD FTMS 0 0 0 6404 35420.33203125 0.5662651866442774 14 -0.3544921875 1 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 28.494509381512117 0.11816142465008336 1 PESDPE 6 -1 52.384 0 0 4.8037 0 0 418.1992359845719 0 418.1992359845719 0 41.92593794827836 0 0 0 1.4247425010840047 0 0 0 PESDPE 4.8037 - 99 NaN NaN 100247.5 NaN 4293 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6406 37.058 NaN 179110 35 0 18020 0.261 + -1 CREFVLFM 8 52 551.2649641495502 1100.5153753659004 2 551.7551879882812 MULTI HCD FTMS 0 0 0 6404 4926.5458984375 0.5858848972932695 -3 0.07958984375 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))REFVLFM_ REV__ENSG00000154447|ENST00000284637|SH3RF1 9.347437153973935 0.5250182646323369 1 MTT 3 -1 24.425 0 0 2.2194 0 0 0 764.3410738580686 764.3410738580686 17.971062485323515 0 0 0 0 0 0 0.4247425010840047 0 MTT 2.2194 - 110 + NaN NaN 126404.1 NaN 4294 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6407 37.061 NaN 32807 35 0 4886.8 0.261 + 17769 MELFLEAL 8 27 483.2560736368336 NaN 0 483.25628662109375 PEAK HCD FTMS 0 0 0 6404 3412.0322265625 0.1336336806102707 9 -0.21515655517578125 3 Unmodified _MELFLEAL_ REV__ENSG00000158941|ENST00000308511|CCAR2;REV__nc|ENSG00000158941|Q8N163-2|CCAR2 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94928.9 NaN 4295 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6408 37.065 NaN 31097 35 0 11883 0.261 + -1 CDCLTHLEVI 10 13 630.2911498130292 1258.5677466928582 2 630.2916870117188 MULTI HCD FTMS 0 0 0 6404 14841.8486328125 0.9741196451647928 1 -0.02645111083984375 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))DC(Carbamidomethyl (C))LTHLEVI_ REV__ENSG00000139626|ENST00000267082|ITGB7;REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF;REV__nc|ENSG00000139626|P26010-2|ITGB7 1.4819007175156935 0.4674597685733628 1 V{I|L} 2 -1 20.969 0 0 1.6661 0 0 1028.4015370099626 0 1028.4015370099626 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.6661 + + 1 NaN NaN 91677.9 NaN 4296 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6409 37.068 NaN 33505 35 0 6477.7 0.261 + -1 RDDDEDMYV 9 26 587.2215215888424 NaN 0 587.2219848632812 PEAK HCD FTMS 0 0 0 6404 10442.2939453125 0.9524706593695255 -7 0.17570877075195312 5 Oxidation (M) _RDDDEDM(Oxidation (M))YV_ REV__ENSG00000036549|ENST00000370801|ZZZ3;REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3;REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88686.2 NaN 4297 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6410 37.071 NaN 13808 35 0 4714.9 0.261 -1 CMFVKISQPK 10 13 619.3250243229139 1236.6354957126277 2 619.826171875 MULTI HCD FTMS 0 0 0 6404 6527.9287109375 0.7371767930985085 -2 0.056369781494140625 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))MFVKISQPK_ ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000157542|ENST00000609713|KCNJ6 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93826.7 NaN 4298 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6411 37.075 NaN 18428 35 0 5002.9 0.261 + -1 GEMSIKKIRT 10 17 589.8298950195312 NaN 0 589.8298950195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _GEM(Oxidation (M))SIKKIRT_ REV__DCK|p.I26M|1|0.32|ENSG00000156136|chr4:70993913-70993913|C/G|missense_variant 1.4819007175156935 0.33891598740166873 1 H 1 -1 6.9897 0 0 0.59405 0 0 250.1803957990249 786.3672579400999 1036.5476537391248 0 0 0 0 0 0 0 0 0 H 0.59405 - 1 + NaN NaN 97946.4 NaN 4299 2110 6404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6413 37.08 NaN 1403100 35 0 110790 0.327 + 26885 SYISRTNQL 9 83 541.2853828772801 1080.55621282136 2 541.28564453125 MULTI HCD FTMS 0 0 0 6412 717194.9375 0.7523834407859064 2 -0.039676666259765625 1 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 181.69086120494794 9.610660986922852E-13 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L} 9 0 + 84.969 0 0 7.8635 7.8635 90.577 0 0 0 1.3140455992344044 1.3140455992344044 1.3140455992344044 9.208187539523735 0 2.579689690656103 0 1.1225649961074042 0.7134679910804405 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTN[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGG[AG]{I|L};[Q{I|L}]D[H{I|L}]TNQ{I|L};[Q{I|L}]DT[H{I|L}]NQ{I|L};[Q{I|L}]D[H{I|L}]TN[AG]{I|L};[Q{I|L}]D[H{I|L}]TGGQ{I|L};[Q{I|L}]DT[H{I|L}]N[AG]{I|L};[Q{I|L}]DT[H{I|L}]GGQ{I|L} 7.8635;7.0113;7.0113;6.1632;4.4711;4.0909;3.6189;3.6189;3.2387;3.2387 +;-;-;-;-;-;-;-;-;- + 1030 NaN NaN 293532.9 NaN 4300 2111 6412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6414 37.084 NaN 529710 35 0 49630 0.261 + 9008 HPEKLATVL 9 72 504.2977957027317 1006.5810384722635 2 504.2979431152344 MULTI HCD FTMS 0 0 0 6412 250612.125 0.1133860814007978 19 -0.4805908203125 2 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 55.50274090549119 0.023872834264864425 1 {[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}ATV 8 5 29.848 0 0 2.9653 0 0 0 146.0827164300496 146.0827164300496 2.311967580408716 0 0 0 0 0 2 0.9749073637206092 0 {[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}ATV 2.9653 - 121 NaN NaN 176694.9 NaN 4301 2111 6412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6415 37.088 NaN 302270 35 0 36245 0.261 + 1902 DAAEIRLVSK 10 74 551.3166935313826 1100.6188341295651 2 551.3173828125 MULTI HCD FTMS 0 0 0 6412 64584.6484375 0.37338004162319816 -5 0.12587738037109375 3 Unmodified _DAAEIRLVSK_ ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF 40.714236015149055 0.13920871250597291 1 DAAE{I|L}R{I|L}VSK 10 0 + 46.973 0 0 4.2679 4.2679 85.949 0 0 0 9.599009323677095 9.599009323677095 9.599009323677095 9.599009323677095 0 2.4846368802282015 0 0.3252574989159953 0 + + DAAE{I|L}R{I|L}VSK;{[DA]|[EG]}AE{I|L}R{I|L}VSK;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}R{I|L}VSK;DAAKK{I|L}{[QN]|[E{I|L}]|[KN]}[{I|L}T] 4.2679;3.3957;3.2137;2.2938 +;+;-;- + 337 + NaN NaN 119618 NaN 4302 2111 6412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6416 37.091 NaN 43179 35 0 6304.2 0.261 -1 HPVLKEMEVQ 10 19 613.3160552948816 1224.6175576565631 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6412 24857.740234375 0.07646397406379063 26 -0.6930427551269531 4 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2622 0 0 891.4385853498062 0 891.4385853498062 0 15.45757490560675 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.2622 - 3 NaN NaN 99500.3 NaN 4303 2111 6412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6418 37.096 NaN 545410 35 0 44456 0.327 + 21707 QADFLDKQM 9 71 556.2582785084871 1110.5020040837742 2 556.2583618164062 MULTI HCD FTMS 0 0 0 6417 155881.84375 0.9777412894093 1 -0.02315521240234375 1 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 107.09958533191995 0.0034159042678574016 1 [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F} 9 0 + 67.208 0 0 6.052 6.052 86.368 0 0 0 41.14007808576609 16.478174818886373 16.478174818886373 7.174617874626037 0 1.5598943791441968 0 0 1.079689690656103 + + [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};{[CP]|[EA]}N{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};[QA]D{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};{[CP]|[EA]}GG{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};{[CP]|[EA]}N{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};[QA]D{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}T{[TV]|[{I|L}S]};{[CP]|[EA]}GG{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};{[CP]|[EA]}N{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}T{[TV]|[{I|L}S]};{[CP]|[EA]}GG{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}T{[TV]|[{I|L}S]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}GKQ{M(Oxidation (M))|F} 6.052;5.406;4.9478;4.5768;4.3017;3.7538;3.4764;3.1078;2.2825;1.3956 +;-;-;-;-;-;-;-;-;- + 501 + NaN NaN 178117 NaN 4304 2112 6417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6419 37.101 NaN 405260 35 0 70220 0.261 + 35158 YVHMVTHF 8 56 525.247264992183 1048.4799770511659 2 525.2473754882812 MULTI HCD FTMS 0 0 0 6417 111718.25 0.9115849192325772 2 -0.046405792236328125 2 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 98.80718514221951 0.03801807386884047 1 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 87.29 0 0 8.3254 8.3254 95.964 0 0 0 0.45757490560674796 0.45757490560674796 0.45757490560674796 30.853481135844874 0 2.7614393726401687 2 0.7614393726401688 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[YV]VTH{M(Oxidation (M))|F} 8.3254;5.3827;5.0414;3.5566 +;-;-;- + 347 NaN NaN 159384 NaN 4305 2112 6417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6420 37.104 NaN 224180 35 0 40281 0.261 + 34895 YSFTTTAER 9 42 538.2563392531517 1074.4981255731034 2 538.2568969726562 MULTI HCD FTMS 0 0 0 6417 46514.109375 0.9615486702974898 -2 0.042972564697265625 3 Unmodified _YSFTTTAER_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 29.84058131909904 0.11198220037953927 1 TTT{M(Oxidation (M))|F}[MT] 6 6 30.393 0 0 2.8285 0 0 374.19261367011876 0 374.19261367011876 0 23.40288749933073 0 0 0 0.6747425010840047 0 0.3494850021680094 0 TTT{M(Oxidation (M))|F}[MT] 2.8285 - 75 NaN NaN 134218.3 NaN 4306 2112 6417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6421 37.108 NaN 49198 35 0 5062.9 0.261 -1 ICDCNLKWL 9 26 582.780650287973 1163.546747642746 2 582.7805786132812 MULTI HCD FTMS 0 0 0 6417 34694.24609375 0.7286017717002767 2 -0.046405792236328125 4 Carbamidomethyl (C) _IC(Carbamidomethyl (C))DCNLKWL_ ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 6.2057823575117 0.30397260197431997 1 WK{I|L} 3 -1 31.198 0 0 2.6813 0 0 718.2784901349625 0 718.2784901349625 0 31.197887582883936 0 0 0 0.5 0 0 0 WK{I|L} 2.6813 - 3 NaN NaN 89139.2 NaN 4307 2112 6417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6422 37.111 NaN 30727 35 0 5458.3 0.261 -1 QQHCPMCR 8 23 566.7254173937089 1131.4362818542177 2 566.7254028320312 MULTI HCD FTMS 0 0 0 6417 17622.9375 0.77518672296134 7 -0.17218399047851562 5 2 Carbamidomethyl (C),Oxidation (M) _QQHC(Carbamidomethyl (C))PM(Oxidation (M))C(Carbamidomethyl (C))R_ ENSG00000141552|ENST00000344877|ANAPC11;ENST00000357385.7_1_17:79857297-79857938:+|nuORF;ENST00000573956.1_1_17:79857674-79857938:+|nuORF 0.7936320650641473 0.540814922690045 1 D[EP] 3 -1 10.458 0 0 0.92427 0 0 772.32133681465 0 772.32133681465 0 7.983324797206281 0 0 0 0 0 0 0 D[EP] 0.92427 - 2 NaN NaN 89017.8 NaN 4308 2112 6417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6423 37.114 NaN 12388 35 0 3051.8 0.261 + -1 YFDYTCMTHG 10 9 627.2336775478924 NaN 0 627.2337646484375 PEAK HCD FTMS 0 0 0 6417 6965.4951171875 0.7762103755649362 5 -0.1092376708984375 6 Oxidation (M) _YFDYTCM(Oxidation (M))THG_ REV__ENSG00000007001|ENST00000005756|UPP2;REV__nc|ENSG00000007001|O95045-2|UPP2 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93684.5 NaN 4309 2112 6417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6425 37.119 NaN 457690 35 0 51987 0.327 -1 DSPMESTQSL 10 82 555.7345023579659 1109.4544517827317 2 555.73486328125 MULTI HCD FTMS 0 0 0 6424 138719.84375 0.7784172669439884 3 -0.06624603271484375 1 Oxidation (M) _DSPM(Oxidation (M))ESTQSL_ ENSG00000131242|ENST00000621161|RAB11FIP4;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4 31.26834338654808 0.2211790902911672 1 SQTS{I|L} 5 -1 46.621 0 0 4.2021 0 0 575.1898670880875 0 575.1898670880875 0 1.865633818072503 0 0 0 1.2614393726401687 0 0.805462187404089 0 SQTS{I|L} 4.2021 - 476 NaN NaN 167629.2 NaN 4310 2113 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6426 37.124 NaN 123320 35 0 16568 0.261 + 15207 LNKGQDPLA 9 36 478.2639566527583 954.5133603723166 2 478.2640075683594 MULTI HCD FTMS 0 0 0 6424 54986.41796875 0.09792231946010105 11 -0.2883644104003906 2 Unmodified _LNKGQDPLA_ ENSG00000013364|ENST00000357402|MVP 17.11289562659939 0.2125047172822487 1 DPA{I|L} 4 7 40.191 0 0 4.2106 0 0 540.3023548810562 0 540.3023548810562 0 40.19077524932108 0 0 0 0.8252574989159953 0 0 0 DPA{I|L} 4.2106 - 12 NaN NaN 103791.2 NaN 4311 2113 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6427 37.127 NaN 165190 35 0 21887 0.261 + 14004 KYTEGVQSL 9 37 512.7687132278074 1023.5228735224149 2 512.768798828125 MULTI HCD FTMS 0 0 0 6424 68055.734375 0.632690179631568 -3 0.06612777709960938 3 Unmodified _KYTEGVQSL_ ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF 47.7319792270244 0.034743597693959835 1 TERQS{I|L} 6 4 55.099 0 0 5.3833 0 0 291.15818984199376 0 291.15818984199376 0 35.63486257521106 0 0 0 1.9247425010840047 0 0.4247425010840047 0 TERQS{I|L} 5.3833 - 97 NaN NaN 108700 NaN 4312 2113 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6428 37.131 NaN 102810 35 0 30259 0.261 -1 RYLEKPMEI 9 31 597.8130841336915 1193.611615334183 2 597.8135986328125 MULTI HCD FTMS 0 0 0 6424 58671.30859375 0.12321993063389276 48 -1.3552665710449219 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 5.296884461304476 0.3108627248283497 1 K 1 -1 14.732 0 0 1.2342 0 0 561.2899123085955 501.20246301822505 1062.4923753268206 0 0 0 0 0 0.9247425010840047 0 0 0 K 1.2342 + + 9 + NaN NaN 103695.9 NaN 4313 2113 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6429 37.134 NaN 121930 35 0 10121 0.264 -1 MTRTRKRNM 9 44 409.21310851051163 NaN 0 409.221923828125 PEAK HCD FTMS 0 0 0 6424 9161.4111328125 0.08202714401301006 25 -0.6766128540039062 5 2 Oxidation (M) _M(Oxidation (M))TRTRKRNM(Oxidation (M))_ ENST00000261303.12_1_14:90722897-90729664:+|nuORF 4.189502756095605 0.27494509657688126 1 P 1 -1 3.9794 0 0 0.48743 0 0 600.2859296901655 116.05065332584218 716.3365830160077 0 0 0 0 0 0 0 0 0 P 0.48743 - 9 + NaN NaN 108951.9 NaN 4314 2113 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6430 37.137 NaN 19260 35 0 4201.4 0.261 + -1 FDRKELCE 8 20 569.7624874256126 1137.510421918025 2 569.7617797851562 MULTI HCD FTMS 0 0 0 6424 14896.66015625 1 0 0 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))FDRKELC(Carbamidomethyl (C))E_ REV__ENST00000371753.5_1_9:138898823-138899147:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90022.8 NaN 4315 2113 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6432 37.143 NaN 1629700 35 0 186740 0.327 + 1530 AYVHMVTHF 9 95 560.7657570063983 1119.5169610795965 2 560.765869140625 MULTI HCD FTMS 0 0 0 6431 854810.125 0.8707766863203703 4 -0.09263992309570312 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 107.82 0 0 9.6308 9.6308 90.6 0 0 0 4.150129845764127 4.150129845764127 4.150129845764127 4.150129845764127 0 2.9291746928241125 2 0.868415180652539 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{NN|[MP]|[D{I|L}]|[EV]}QQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]V{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[HV]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTH{M(Oxidation (M))|F} 9.6308;9.2601;8.4483;6.2899;6.1588;5.8949;5.8825;4.7021;4.6377;4.6354 +;+;-;-;-;-;-;-;-;- + 2655 + NaN NaN 325285 NaN 4316 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6433 37.147 NaN 304900 35 0 29977 0.261 + -1 KCYAQTTL 8 50 492.74290893971363 NaN 0 492.7264099121094 PEAK HCD FTMS 0 0 0 6431 4450.27099609375 0.6619834470636514 -3 0.06292724609375 2 Carbamidomethyl (C) _KC(Carbamidomethyl (C))YAQTTL_ REV__ENSG00000131148|ENST00000253457|EMC8;REV__nc|ENSG00000131148|O43402-2|EMC8 8.593279151180031 0.38822285293237185 1 TQT 3 -1 14.693 0 0 1.494 0 0 132.05680224281144 518.2367944435192 650.2935966863306 0 0 0 0 0 0 0 0 0 TQT 1.494 - 30 + NaN NaN 128282.6 NaN 4317 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6434 37.151 NaN 361790 35 0 65158 0.261 + 35159 YVHMVTHF 8 52 525.247264992183 1048.4799770511659 2 525.247314453125 MULTI HCD FTMS 0 0 0 6431 120593.390625 0.9840032067533573 4 -0.09263992309570312 3 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 98.80718514221951 0.03801807386884047 1 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 89.179 0 0 8.5056 8.5056 97.217 0 0 0 0.1452280640859982 0.1452280640859982 0.1452280640859982 53.83925646871916 0 2.805462187404089 2 0.7302046884880937 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[YV][VP][C(Carbamidomethyl (C))Q]H{M(Oxidation (M))|F} 8.5056;3.3706 +;- + 243 NaN NaN 142348.1 NaN 4318 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6435 37.154 NaN 688740 35 0 73988 0.261 + 1901 DAAEFPNQIP 10 95 551.2649641495502 1100.5153753659004 2 551.2843017578125 MULTI HCD FTMS 0 0 0 6431 7569.0576171875 0.4556038810342841 -1 0.023250579833984375 4 Unmodified _DAAEFPNQIP_ ENSG00000138400|ENST00000374412|MDH1B 18.1463463914782 0.3413772152514074 1 MTTTG{I|L}{I|L}G 8 9 35.559 0 0 3.2311 0 0 0 323.0985506647094 323.0985506647094 -3.317154153632245 0 -3.317154153632245 0 0 0 0 0.5 0 MTTTG{I|L}{I|L}G 3.2311 - 3834 + NaN NaN 180308.5 NaN 4319 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6436 37.157 NaN 156240 35 0 15206 0.261 + 8929 HPDLLSDTHL 10 30 574.2907481779872 1146.5669434227743 2 574.2908325195312 MULTI HCD FTMS 0 0 0 6431 71815.984375 0.016255709310976973 60 -1.673095703125 5 Unmodified _HPDLLSDTHL_ ENSG00000138002|ENST00000260570|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;nc|ENSG00000138002|Q9UG01-2|IFT172 18.1463463914782 0.3413772152514074 1 VT{I|L} 3 8 33.188 0 0 2.8945 0 0 815.3546397420022 0 815.3546397420022 0 13.494850021680094 0 0 0 0.5 0 0.5 0 VT{I|L} 2.8945 - 17 NaN NaN 103855.1 NaN 4320 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6437 37.161 NaN 148450 35 0 19980 0.261 + 31684 VYKPAQNSW 9 39 546.7763030705011 1091.538053207802 2 546.7774047851562 MULTI HCD FTMS 0 0 0 6431 49131.76953125 1 0 0 6 Unmodified _VYKPAQNSW_ ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant 27.628801355627647 0.12213550946336599 1 [YV]KGER 6 6 52.396 0 0 4.8002 0 0 0 356.12543665103755 356.12543665103755 21.95046257204389 0 0 0 0 0.8494850021680094 2 0 0 [YV]KGER 4.8002 - 80 + NaN NaN 129045.8 NaN 4321 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6438 37.164 NaN 125010 35 0 12408 0.263 + -1 RRIVVYFKM 9 46 409.9057375497935 1226.6953832495806 3 409.9058532714844 MULTI HCD FTMS 0 0 0 6431 17968.419921875 0.13226422864327647 60 -1.673095703125 7 Oxidation (M) _RRIVVYFKM(Oxidation (M))_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 1.0714618166137932 0.3428945748894048 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7312 0 0 1061.6493607659852 0 1061.6493607659852 0 11.94537812595911 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7312 + + 7 + NaN NaN 109265.3 NaN 4322 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6439 37.167 NaN 110220 35 0 12810 0.261 -1 SERVPGATM 9 42 482.23001011739706 NaN 0 482.2397766113281 PEAK HCD FTMS 0 0 0 6431 9330.08203125 0.6208703189344638 -4 0.08937835693359375 8 Oxidation (M) _SERVPGATM(Oxidation (M))_ ENSG00000119711|ENST00000553458|ALDH6A1;ENST00000554231.5_1_14:74537838-74551097:-|nuORF;nc|ENSG00000119711|Q02252-2|ALDH6A1 14.838274106304384 0.2220448417561729 1 {I|L}EAD 4 -1 16.019 0 0 1.6644 0 0 360.1539156431941 171.08838831119377 531.2423039543879 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}EAD 1.6644 - 45 + NaN NaN 100150.8 NaN 4323 2114 6431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6441 37.173 NaN 277330 35 0 66072 0.327 + 22184 QLFRRLKEE 9 52 406.9021420523679 NaN 0 406.91534423828125 PEAK HCD FTMS 0 0 0 6440 2902.68701171875 0.4273025389867457 4 -0.09595489501953125 1 Unmodified _QLFRRLKEE_ GAS2L1|p.E522K|1|0.2|ENSG00000185340|chr22:29312015-29312015|G/A|missense_variant 2.0860074813731053 0.28513834112692665 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 138223 NaN 4324 2115 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6442 37.177 NaN 89695 35 0 17360 0.261 -1 EGHEEMVAL 9 38 515.7287984381046 1029.4430439430091 2 515.7290649414062 MULTI HCD FTMS 0 0 0 6440 30684.34765625 0.8645625349517371 -1 0.02982330322265625 2 Oxidation (M) _EGHEEM(Oxidation (M))VAL_ ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000490185.1_1_5:139838323-139844373:+|nuORF;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 11.640296217721598 0.25978676193971967 1 VA{I|L} 3 -1 28.188 0 0 2.7381 0 0 728.2485218732437 0 728.2485218732437 0 11.197887582883936 0 0 0 0.5 0 0 0 VA{I|L} 2.7381 + + 20 NaN NaN 101261.9 NaN 4325 2115 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6443 37.18 NaN 98400 35 0 12138 0.261 -1 SPDSGVYEM 9 44 500.7000073297071 999.3854617262142 2 500.6998596191406 MULTI HCD FTMS 0 0 0 6440 16414.849609375 0.09003687735371295 -14 0.3480262756347656 3 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 20.453626601364224 0.18364154288633264 1 YE{M(Oxidation (M))|F} 3 -1 36.911 0 0 3.6934 0 0 542.2331519865028 0 542.2331519865028 0 36.91122510072759 0 0 0 1.4247425010840047 0 0.4247425010840047 0 YE{M(Oxidation (M))|F} 3.6934 + + 15 + NaN NaN 102910.8 NaN 4326 2115 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6445 37.186 NaN 157390 35 0 30329 0.327 + 25230 SAQPAEQEL 9 40 486.73526752658273 971.4559821199655 2 486.735107421875 MULTI HCD FTMS 0 0 0 6444 66152.3046875 0.5840743338927482 4 -0.115936279296875 1 Unmodified _SAQPAEQEL_ ENSG00000167705|ENST00000301336|RILP 21.590151480376914 0.17382222009858564 1 {[QN]|[E{I|L}]|[KN]}[DP]EQ{[QN]|[E{I|L}]|[KN]} 8 3 + 23.645 0 0 2.434 2.434 84.405 0 0 0 0.45757490560674796 18.16061246681059 0.45757490560674796 9.262137858390812 0 1 0 0 0 {[QN]|[E{I|L}]|[KN]}[DP]EQ{[QN]|[E{I|L}]|[KN]};{[QN]|[E{I|L}]|[KN]}[DP]E[AG]{[QN]|[E{I|L}]|[KN]};{[QN]|[E{I|L}]|[KN]}E[DP]Q{[QN]|[E{I|L}]|[KN]};{[QN]|[E{I|L}]|[KN]}E[DP][AG]{[QN]|[E{I|L}]|[KN]} 2.434;1.4806;1.2996;0.34612 -;-;-;- 49 NaN NaN 103965 NaN 4327 2116 6444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6446 37.19 NaN 200070 35 0 21532 0.261 + 8455 HAALETQTL 9 44 492.2613156775101 982.5080784218202 2 492.26141357421875 MULTI HCD FTMS 0 0 0 6444 57172.61328125 0.44002425934615574 5 -0.14585494995117188 2 Unmodified _HAALETQTL_ ENSG00000176945|ENST00000447234|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20 21.536976647645854 0.1742816388551942 1 TQT{I|L} 4 5 37.83 0 0 3.8503 0 0 521.2599354474625 0 521.2599354474625 0 30.839868525585466 0 0 0 0.7396518287104438 0 0 0 + TQT{I|L} 3.8503 + + 59 NaN NaN 115393.5 NaN 4328 2116 6444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6447 37.194 NaN 95782 35 0 7907.3 0.261 -1 ELMLSMLF 8 38 508.2456725047597 1014.4767920763194 2 509.26385498046875 MULTI HCD FTMS 0 0 0 6444 5268.52685546875 0.7649506820432728 1 -0.01983642578125 3 2 Oxidation (M) _ELM(Oxidation (M))LSM(Oxidation (M))LF_ ENSG00000077312|ENST00000243563|SNRPA 13.50788311687929 0.4944073034352369 1 E{I|L} 2 -1 33.443 0 0 3.2966 0 0 0 769.3144625299436 769.3144625299436 28.504930719009636 0 0 0 0 0 1.3979400086720375 0 0 E{I|L} 3.2966 + + 26 + NaN NaN 97511.5 NaN 4329 2116 6444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6448 37.197 NaN 83486 35 0 8905 0.261 -1 MVDGKPVNL 9 53 494.7601325759539 987.5057122187078 2 494.7596435546875 MULTI HCD FTMS 0 0 0 6444 33475.625 0.3608779188661395 13 -0.3514518737792969 4 Oxidation (M) _M(Oxidation (M))VDGKPVNL_ ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 13.90604991867851 0.24021115267848145 1 D{NN|[MP]|[D{I|L}]|[EV]} 3 -1 15.458 0 0 1.5653 0 0 626.3781605451187 0 626.3781605451187 0 5 0 0 0 0.5 0 0 0 D{NN|[MP]|[D{I|L}]|[EV]} 1.5653 - 13 NaN NaN 108773.3 NaN 4330 2116 6444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6449 37.2 NaN 219280 35 0 31490 0.262 + 20748 PGGAKQHI 8 64 404.22721379405806 806.4398746549161 2 404.2276306152344 MULTI HCD FTMS 0 0 0 6444 37129.234375 0.27567214394291734 -4 0.0894012451171875 5 Unmodified _PGGAKQHI_ REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF 13.50788311687929 0.4944073034352369 1 PDG{I|L}RH{I|L} 7 -1 + 58.879 0 0 7.3011 7.3011 86.559 0 0 0 2.346368802282015 2.346368802282015 2.346368802282015 2.346368802282015 0 1.6237125054200234 1.5228787452803376 0 0 PDG{I|L}RH{I|L};[DP]G{I|L}RH{I|L} 7.3011;7.0101 -;- 58 + NaN NaN 111798.1 NaN 4331 2116 6444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6451 37.206 NaN 638860 35 0 204230 0.327 + -1 VYTMVAKKI 9 66 534.8099111520801 1067.60526937096 2 535.2931518554688 MULTI HCD FTMS 0 0 0 6450 13136.943359375 0.08356756119287212 40 -1.1448974609375 1 Oxidation (M) _VYTM(Oxidation (M))VAKKI_ REV__tr|U7SP14|U7SP14_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01846PE=4SV=1 7.289230182591677 0.29575926068275815 1 YPD{[VA]|[{I|L}G]}R[H{I|L}] 8 -1 17.101 0 0 1.6018 0 0 98.0998122259136 0 98.0998122259136 0 1.61622501717439 0 0 0 0 0 0.4247425010840047 0 YPD{[VA]|[{I|L}G]}R[H{I|L}] 1.6018 - 200 + NaN NaN 186095.3 NaN 4332 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6452 37.21 NaN 137610 35 0 17618 0.261 + 22471 QQYQEATF 8 44 507.7309066318593 1013.4472603305186 2 508.2459716796875 MULTI HCD FTMS 0 0 0 6450 1707.3988037109375 0.11889751159868242 7 -0.20228195190429688 2 Unmodified _QQYQEATF_ REV__ENSG00000120616|ENST00000319778|EPC1;REV__nc|ENSG00000120616|Q9H2F5-3|EPC1;REV__nc|ENSG00000120616|Q9H2F5|EPC1 10.183394434864962 0.5188676124868831 1 T{M(Oxidation (M))|F} 2 -1 18.698 0 0 1.845 0 0 747.3204120412593 0 747.3204120412593 0 10.114393726401687 0 0 0 0 0 0.25 0 T{M(Oxidation (M))|F} 1.845 + + 26 + NaN NaN 120018 NaN 4333 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6453 37.214 NaN 30938 35 0 5815.9 0.261 + -1 YCFSYMGE 8 24 528.6931148933511 1055.371676853502 2 528.6936645507812 MULTI HCD FTMS 0 0 0 6450 17601.77734375 0.7650915046590465 4 -0.12601852416992188 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))FSYMGE_ REV__ENSG00000167910|ENST00000301645|CYP7A1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83234.5 NaN 4334 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6454 37.217 NaN 44983 35 0 6131.9 0.261 -1 HPVLKEMEVQ 10 20 613.3160552948816 1224.6175576565631 2 613.8192138671875 MULTI HCD FTMS 0 0 0 6450 10113.1572265625 0.05146690325431467 31 -0.882598876953125 4 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 26.198 0 0 2.1393 0 0 0 888.4082735650999 888.4082735650999 16.47095285566838 0 0 0 0 0 0 0 0 HPV 2.1393 + + 4 + NaN NaN 83630.4 NaN 4335 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6455 37.22 NaN 22892 35 0 5532.3 0.261 -1 HWNYPRCNL 9 16 630.2911376953125 NaN 0 630.2911376953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _HWNYPRC(Carbamidomethyl (C))NL_ ENSG00000196569|ENST00000421865|LAMA2 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85821.4 NaN 4336 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6456 37.223 NaN 14153 35 0 3805.6 0.261 + -1 LWQYCLEQ 8 13 570.2628784179688 NaN 0 570.2628784179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _LWQYC(Carbamidomethyl (C))LEQ_ REV__ENSG00000137185|ENST00000252207|ZSCAN9;REV__ENSG00000186812|ENST00000330501|ZNF397;REV__ENST00000589630.1_1_18:32821039-32822911:+|nuORF;REV__nc|ENSG00000137185|O15535-2|ZSCAN9;REV__nc|ENSG00000186812|Q8NF99-2|ZNF397;REV__nc|ENSG00000186812|Q8NF99-3|ZNF397 0.7936320650641473 0.38822285293237185 1 N 1 -1 3.9794 0 0 0.35047 0 0 844.1325003888686 174.2381533258422 1018.3706537147108 0 0 0 0 0 0 0 0 0 N 0.35047 - 1 + NaN NaN 80949.6 NaN 4337 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6457 37.227 NaN 9435.5 35 0 6223.8 0.261 + -1 DGMEDGCCCCC 11 5 634.6450805664062 NaN 0 634.6450805664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C),Oxidation (M) _DGM(Oxidation (M))EDGC(Carbamidomethyl (C))C(Carbamidomethyl (C))CCC_ REV__ENSG00000135272|ENST00000393486|MDFIC;REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF;REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91598.1 NaN 4338 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6458 37.23 NaN 21385 35 0 4547.8 0.261 -1 DSTCQPEMTF 10 14 587.723109964646 NaN 0 587.7227783203125 PEAK HCD FTMS 0 0 0 6450 7352.0126953125 0.7552259680705841 2 -0.06294631958007812 8 Oxidation (M) _DSTCQPEM(Oxidation (M))TF_ ENSG00000243477|ENST00000443094|NAA80;nc|ENSG00000243477|Q93015-2|NAA80 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90338.9 NaN 4339 2117 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6460 37.235 NaN 432090 35 0 37109 0.327 + 9009 HPEKLATVL 9 72 504.2977957027317 1006.5810384722635 2 504.2978820800781 MULTI HCD FTMS 0 0 0 6459 200411.40625 0.09067344216769582 26 -0.7432937622070312 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 47.594388314883695 0.03493607795751234 1 HPE 3 6 27.703 0 0 2.7522 0 0 0 640.4033297174436 640.4033297174436 0.4697490226494949 0 0 0 0 0.5 0 0 0 + HPE 2.7522 + + 226 + NaN NaN 141477.7 NaN 4340 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6461 37.24 NaN 291330 35 0 21318 0.261 + 26886 SYISRTNQL 9 55 541.2853828772801 1080.55621282136 2 541.2853393554688 MULTI HCD FTMS 0 0 0 6459 139167.890625 0.14599603388214683 9 -0.24871063232421875 2 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 110.79276546118962 0.0028129822227594098 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNGA{I|L} 10 2 + 80.078 0 0 7.4108 7.4108 87.318 0 0 0 5.764837301042718 74.5933490197749 5.764837301042718 3.521825181113627 0 2.5356668758921828 0 0.6139829889124311 0.4247425010840047 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNGA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGGA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SR[NS]AA{I|L};{[QN]|[E{I|L}]|[KN]}NT[H{I|L}]NGA{I|L};{[QN]|[E{I|L}]|[KN]}NT[H{I|L}]NQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[VG][NS][RV] 7.4108;7.0849;6.5627;6.2327;4.9773;2.5565;2.2306;1.9495 -;+;-;-;-;-;-;- + 409 NaN NaN 135958.8 NaN 4341 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6462 37.243 NaN 915640 35 0 93063 0.261 + 4034 ESAGGLIQTAR 11 97 551.7962511560278 1101.5779493788555 2 551.7964477539062 MULTI HCD FTMS 0 0 0 6459 168160.625 0.9735759086306227 1 -0.033138275146484375 3 Unmodified _ESAGGLIQTAR_ ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 87.12335221954112 0.005855231244176575 1 ESAGG{I|L}{I|L}QTAR 11 0 + 81.087 0 0 7.361 7.361 87.249 0 0 0 34.80813503128668 15.07062321345802 15.07062321345802 3.565473235138114 0 1.0044321917401078 0 1.3539171939081172 0.2614393726401688 + + ESAGG{I|L}{I|L}QTAR;ESQG{I|L}{I|L}QTAR;ESAN{I|L}{I|L}QTAR;ESAGG{I|L}{I|L}[AG]TAR;ESQG{I|L}{I|L}[AG]TAR;ESAN{I|L}{I|L}[AG]TAR;[{I|L}T]{M(Oxidation (M))|F}{I|L}{I|L}{I|L}GYY 7.361;7.0373;6.9598;6.5323;6.2054;6.1279;2.1005 +;-;-;-;-;-;- + 3509 + NaN NaN 220814.9 NaN 4342 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6463 37.247 NaN 219850 35 0 53343 0.261 + 13074 KYLEERAMRQF 11 35 490.92193544926226 1469.7439769479868 3 490.9222412109375 MULTI HCD FTMS 0 0 0 6459 57387.91796875 0.7923953106452641 1 -0.033138275146484375 4 Unmodified _KYLEERAMRQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 5.523293073838413 0.3946973793746473 1 KY 2 9 20.969 0 0 1.4267 0 0 0 1175.5638265941814 1175.5638265941814 6.365006360318688 0 0 0 0 0 0 0 0 + KY 1.4267 + + 16 + NaN NaN 111181.9 NaN 4343 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6464 37.25 NaN 148630 35 0 25653 0.261 + -1 ATTDACTLC 9 49 478.1961803492184 954.3778077652369 2 478.1964111328125 MULTI HCD FTMS 0 0 0 6459 92473.1796875 1 0 0 5 Carbamidomethyl (C) _ATTDAC(Carbamidomethyl (C))TLC_ REV__FARP2|p.R152C|1|0.19|ENSG00000006607|chr2:241411076-241411076|C/T|missense_variant 21.74664581756881 0.17247014374749275 1 [TA]ASEAAR 8 -1 58.949 0 0 6.1767 0 0 0 193.99102197818596 193.99102197818596 54.96958112247662 0 0 0 0 1.589136830878453 1.6989700043360187 0.3494850021680094 0 [TA]ASEAAR 6.1767 - 74 + NaN NaN 104260.4 NaN 4344 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6465 37.253 NaN 159480 35 0 29179 0.261 -1 0 35 522.2753786736802 1042.5362044141602 2 522.275634765625 MULTI HCD FTMS 0 0 0 6459 31445.6015625 0.2889516113516666 -11 0.2616081237792969 6 NaN NaN 1 {I|L}P 2 -1 42.959 0 0 4.1206 0 0 0 829.3768041335031 829.3768041335031 25.194590330151847 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}P 4.1206 - 4 + NaN NaN 116613.7 NaN 4345 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6466 37.257 NaN 24415 35 0 4141.8 0.261 + -1 RDDDEDMYV 9 21 587.2215215888424 NaN 0 587.2210083007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _RDDDEDM(Oxidation (M))YV_ REV__ENSG00000036549|ENST00000370801|ZZZ3;REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3;REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103224 NaN 4346 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6467 37.26 NaN 54844 35 0 4677.7 0.262 + 34120 YNSIEIRP 8 33 496.26438302833196 NaN 0 496.264404296875 PEAK HCD FTMS 0 0 0 6459 8231.619140625 0.8427002148045375 2 -0.06629180908203125 8 Unmodified _YNSIEIRP_ ENST00000549588.5_1_12:60098582-60157842:+|nuORF 0.6903765706972694 0.38822285293237185 1 A 1 8 5.4846 0 0 0.55371 0 0 117.14368197287645 799.3124483697874 916.4561303426639 0 0 0 0 0 0 0 0 0 A 0.55371 - 2 + NaN NaN 90339.7 NaN 4347 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6468 37.263 NaN 19603 35 0 3667 0.261 + 32879 WYHWHPGHI 9 18 616.7902143833312 NaN 0 616.7902221679688 PEAK HCD FTMS 0 0 0 6459 7698.017578125 0.9614599200207398 -4 0.09263992309570312 9 Unmodified _WYHWHPGHI_ ENSG00000170074|ENST00000614127|FAM153A 2.302733041254933 0.2840881193086663 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90177.5 NaN 4348 2118 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6470 37.268 NaN 290470 35 0 38373 0.327 -1 MEEEAGQTSI 10 63 555.7345023579659 1109.4544517827317 2 555.7346801757812 MULTI HCD FTMS 0 0 0 6469 119357.359375 0.6697659611106571 9 -0.23884963989257812 1 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 33.4449034751529 0.20229115034201947 1 QTS{I|L} 4 -1 49.597 0 0 4.4704 0 0 662.2228871076187 0 662.2228871076187 0 18.87410998645601 0 0 0 1.305462187404089 0 0.805462187404089 0.3054621874040891 QTS{I|L} 4.4704 + + 177 NaN NaN 138347.7 NaN 4349 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6471 37.273 NaN 283440 35 0 49277 0.261 -1 LSSQSMPHF 9 55 525.2374292030087 1048.4603054728173 2 525.2473754882812 MULTI HCD FTMS 0 0 0 6469 11064.876953125 0.811514876224012 3 -0.08298492431640625 2 Oxidation (M) _LSSQSM(Oxidation (M))PHF_ ENSG00000117400|ENST00000372470|MPL;nc|ENSG00000117400|P40238-2|MPL 15.847184025352803 0.2234401846867398 1 [YV]H{M(Oxidation (M))|F}VTH 7 -1 52.127 0 0 4.9718 0 0 0 162.05576502017814 162.05576502017814 5.7521226932964 0 0 0 0 0.8807196863200843 2 0 0 [YV]H{M(Oxidation (M))|F}VTH 4.9718 - 240 + NaN NaN 125357.8 NaN 4350 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6472 37.276 NaN 138320 35 0 15835 0.261 -1 0 43 485.76943829633484 969.5243236594697 2 485.7587585449219 MULTI HCD FTMS 0 0 0 6469 12663.845703125 0.7125346932531788 4 -0.11282730102539062 3 NaN NaN 1 {I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}H 5 -1 43.486 0 0 4.4853 0 0 0 402.18479334049067 402.18479334049067 16.523722004121453 0 0 0 0 0.8494850021680094 1.5228787452803376 0.3807196863200844 0.3252574989159953 {I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}H 4.4853 - 34 + NaN NaN 108197.4 NaN 4351 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6473 37.28 NaN 90857 35 0 16775 0.261 + 15145 LMSEDCLPAL 10 36 546.2589853757394 1090.5034178182786 2 546.2451782226562 MULTI HCD FTMS 0 0 0 6469 6566.0498046875 0.5334502745624978 -3 0.08278274536132812 4 Unmodified _LMSEDCLPAL_ REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF 7.289230182591677 0.43672065049472153 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RD]ESDP 8 -1 33.365 0 0 3.0596 0 0 0 144.07422930894407 144.07422930894407 25.9176003468815 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RD]ESDP 3.0596 - 97 NaN NaN 109808.7 NaN 4352 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6474 37.283 NaN 61114 35 0 7988.7 0.262 + 30951 VRLVALPN 8 35 441.28214734093876 NaN 0 441.29754638671875 PEAK HCD FTMS 0 0 0 6469 2456.323974609375 0.743648654331977 2 -0.06307220458984375 5 Unmodified _VRLVALPN_ REV__ENSG00000100439|ENST00000428304|ABHD4;REV__ENST00000544562.5_1_14:23067206-23078652:+|nuORF 0.6903765706972694 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.79379 0 0 489.8150138207463 330.6969088190063 820.5119226397526 0 0 0 0 0 0 0 0 0 G 0.79379 - 1 + NaN NaN 102075.7 NaN 4353 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6475 37.286 NaN 59564 35 0 8860.9 0.261 + 674 APRYGTVI 8 32 438.75033908942 875.48612524564 2 438.7504577636719 MULTI HCD FTMS 0 0 0 6469 41839.56640625 0.9843966897730146 3 -0.08298492431640625 6 Unmodified _APRYGTVI_ BOLL|p.R34C|1|0.23|ENSG00000152430|chr2:197781751-197781751|G/A|missense_variant;ENSG00000152430|ENST00000392296|BOLL;nc|ENSG00000152430|Q8N9W6-2|BOLL;nc|ENSG00000152430|Q8N9W6-3|BOLL;nc|ENSG00000152430|Q8N9W6-4|BOLL 6.723162845929126 0.5320176132289695 1 V{I|L} 2 6 23.711 0 0 2.7084 0 0 645.3246937482437 0 645.3246937482437 0 23.711375162600703 0 0 0 0.2742275032520141 0 0 0 + V{I|L} 2.7084 + + 11 NaN NaN 95201.5 NaN 4354 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6476 37.29 NaN 41460 35 0 4753.2 0.261 -1 HPVLKEMEVQ 10 21 613.3160552948816 1224.6175576565631 2 613.3161010742188 MULTI HCD FTMS 0 0 0 6469 9966.486328125 0.03065753945915892 34 -0.9524269104003906 7 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2622 0 0 891.4374256818375 0 891.4374256818375 0 15.45757490560675 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.2622 - 2 NaN NaN 85515.1 NaN 4355 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6477 37.293 NaN 26872 35 0 5964.2 0.261 + -1 YQKEWCME 8 24 566.7254173937089 1131.4362818542177 2 566.7249755859375 MULTI HCD FTMS 0 0 0 6469 14966.8916015625 0.6583542416542552 14 -0.3981475830078125 8 Oxidation (M) _YQKEWCM(Oxidation (M))E_ REV__ENST00000264151.9_1_2:190626146-190626242:-|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 81979.6 NaN 4356 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6478 37.296 NaN 20780 35 0 2556.9 0.261 -1 PCMKLLTFR 9 23 583.314666086331 NaN 0 583.2822875976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _PC(Carbamidomethyl (C))MKLLTFR_ ENSG00000054690|ENST00000329153|PLEKHH1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93180.7 NaN 4357 2119 6469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6480 37.302 NaN 1238700 35 0 138630 0.327 + 1531 AYVHMVTHF 9 93 560.7657570063983 1119.5169610795965 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6479 652584.375 0.6647736649199726 10 -0.2587318420410156 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 161.8943921545576 8.236690082142223E-09 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 121.44 0 0 10.848 10.848 96.467 0 0 0 97.36977707752656 13.46787486224656 13.46787486224656 15 0 3.1237125054200234 2 0.8882104921644451 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};AYVH[HS]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};AYV[MN]AH[PA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F} 10.848;9.5079;9.4568;6.8859;6.6283;6.3821;6.3519;6.2025;5.6132;5.5534 +;-;+;-;-;-;-;-;-;- + 2551 + NaN NaN 270253.2 NaN 4358 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6481 37.306 NaN 489290 35 0 76365 0.261 + -1 CPRTPACSPL 10 72 551.2649641495502 1100.5153753659004 2 551.2841796875 MULTI HCD FTMS 0 0 0 6479 8901.1875 0.5357887039471054 4 -0.10618209838867188 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PRTPACSPL_ REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF 11.494710602746466 0.4035943721457025 1 AGG{I|L}{I|L}QTAR 9 -1 47.428 0 0 4.3096 0 0 215.01300827781284 0 215.01300827781284 0 -1.7591909294392494 -1.7591909294392494 0 0 0 0 0.6861818737241735 0 AGG{I|L}{I|L}QTAR 4.3096 - 1317 + NaN NaN 170342.9 NaN 4359 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6482 37.31 NaN 481580 35 0 74876 0.261 + 26118 SPLGKEDTL 9 59 480.2558055089815 958.497058084763 2 480.2557678222656 MULTI HCD FTMS 0 0 0 6479 266249.53125 0.4736069289038037 -3 0.096099853515625 3 Unmodified _SPLGKEDTL_ ENSG00000155561|ENST00000285968|NUP205 71.70789743142352 0.008535567138151097 1 SP{I|L}G 4 5 58.66 0 0 6.12 0 0 0 601.2836397760374 601.2836397760374 24.503187623076954 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 + SP{I|L}G 6.12 + + 96 + NaN NaN 170479.3 NaN 4360 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6483 37.313 NaN 161070 35 0 13049 0.261 + 27885 TEEDLDLVTL 10 31 574.2907481779872 1146.5669434227743 2 574.290771484375 MULTI HCD FTMS 0 0 0 6479 66220.1796875 0.014989086355758277 66 -1.8214263916015625 4 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 1 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3556548733886 0 815.3556548733886 0 11.760912590556813 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 15 NaN NaN 120866.9 NaN 4361 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6484 37.316 NaN 86336 35 0 34625 0.261 -1 RYLEKPMEI 9 21 597.8130841336915 1193.611615334183 2 597.813232421875 MULTI HCD FTMS 0 0 0 6479 45905.69140625 0.09640991902780865 55 -1.5273551940917969 5 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 5.731851221503515 0.3075653528928475 1 KE 2 -1 14.464 0 0 1.2118 0 0 504.2261717767073 429.22333704166255 933.4495088183698 0 0 0 0 0 0.5 0 0 0 KE 1.2118 - 4 + NaN NaN 96355.2 NaN 4362 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6485 37.32 NaN 119420 35 0 13846 0.264 -1 FPFRKDLRM 9 45 409.2215258456361 1224.6427481371084 3 409.2215576171875 MULTI HCD FTMS 0 0 0 6479 22856.150390625 0.5139204071610841 -9 0.22185897827148438 6 Oxidation (M) _FPFRKDLRM(Oxidation (M))_ ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7341 0 0 1059.5967714298802 0 1059.5967714298802 0 0.26802492411967194 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7341 + + 7 + NaN NaN 100531.8 NaN 4363 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6486 37.323 NaN 117900 35 0 21571 0.261 + 23970 RVPNEEDPSL 10 33 578.2875389948524 1154.5605250565047 2 578.2860717773438 MULTI HCD FTMS 0 0 0 6479 43797.26953125 0.5100806440606348 -4 0.115936279296875 7 Unmodified _RVPNEEDPSL_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 37.07464296494664 0.1707926854601146 1 EDPS{I|L} 5 5 40.886 0 0 3.5412 0 0 595.310350486525 0 595.310350486525 0 34.94341577071616 0 0 0 1.3182503180159344 0 0.8494850021680094 0 + EDPS{I|L} 3.5412 + + 18 NaN NaN 103521.7 NaN 4364 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6487 37.326 NaN 59193 35 0 7799 0.261 + 10895 IWKCFQSL 8 26 512.7687132278074 1023.5228735224149 2 512.7686767578125 MULTI HCD FTMS 0 0 0 6479 27119.52734375 0.25212068878862065 4 -0.10618209838867188 8 Unmodified _IWKCFQSL_ REV__ENSG00000196678|ENST00000357967|ERI2;REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF;REV__nc|ENSG00000196678|A8K979-2|ERI2;REV__nc|ENSG00000196678|A8K979-3|ERI2;REV__nc|ENSG00000196678|A8K979-4|ERI2 18.1463463914782 0.46027927471454505 1 QS{I|L} 3 -1 29.425 0 0 2.8748 0 0 677.3388305749288 0 677.3388305749288 0 22.43501263708417 0 0 0 0.9247425010840047 0 0 0 QS{I|L} 2.8748 + + 40 NaN NaN 92298.8 NaN 4365 2120 6479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6489 37.332 NaN 351450 35 0 38033 0.327 + 20772 PGPLSKQGS 9 45 435.7373633437153 869.4601737542306 2 435.7374572753906 MULTI HCD FTMS 0 0 0 6488 145424.328125 0.8094639850700031 -1 0.029918670654296875 1 Unmodified _PGPLSKQGS_ ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28 26.268140514670165 0.13340543277302316 1 Q{I|L}KQSG 6 6 58.734 0 0 6.7552 0 0 210.10056371775119 0 210.10056371775119 0 53.249256301612746 0 0 0 2.504432191740108 0 0.805462187404089 0.3494850021680094 Q{I|L}KQSG 6.7552 - 58 + NaN NaN 148742.9 NaN 4366 2121 6488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6490 37.336 NaN 232970 35 0 46920 0.261 + 25984 SPDSGVYEM 9 35 500.7000073297071 999.3854617262142 2 500.70001220703125 MULTI HCD FTMS 0 0 0 6488 93390.3984375 0.5122544555832658 -8 0.21210098266601562 2 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 71.13359017698441 0.008721403657255008 1 SRYE{M(Oxidation (M))|F} 5 5 63.756 0 0 6.3795 0 0 299.11204726386876 0 299.11204726386876 0 46.4363034371533 0 0 0 2 0 1.2302046884880937 0 SRYE{M(Oxidation (M))|F} 6.3795 - 51 NaN NaN 112345.4 NaN 4367 2121 6488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6491 37.34 NaN 183330 35 0 52619 0.262 -1 0 40 406.91523338885463 1217.7238707667639 3 406.9152526855469 MULTI HCD FTMS 0 0 0 6488 46527.15625 0.23640184736750766 18 -0.4977302551269531 3 NaN NaN 1 KY 2 -1 25.217 0 0 2.0708 0 0 0 923.5421534802068 923.5421534802068 2.2577249674798594 0 0 0 0 0.4247425010840047 0 0 0 KY 2.0708 - 8 + NaN NaN 111486.8 NaN 4368 2121 6488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6492 37.343 NaN 75313 35 0 10968 0.261 -1 MEDAHLDAI 9 33 515.7287984381046 1029.4430439430091 2 515.729248046875 MULTI HCD FTMS 0 0 0 6488 22000.548828125 0.6198877185938453 5 -0.12598419189453125 4 Oxidation (M) _M(Oxidation (M))EDAHLDAI_ ENSG00000163050|ENST00000366777|COQ8A;ENST00000478406.5_1_1:227171537-227174435:+|nuORF;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-2|COQ8A;nc|ENSG00000163050|Q8NI60-3|COQ8A;nc|ENSG00000163050|Q8NI60-4|COQ8A 4.3292370932331545 0.3181982124262546 1 H{[{M(Oxidation (M))|F}C]|[YS]}A{I|L} 5 -1 26.026 0 0 2.5281 0 0 440.16963393379064 0 440.16963393379064 0 9.035984316004217 0 0 0 0.3807196863200844 0 0 0 H{[{M(Oxidation (M))|F}C]|[YS]}A{I|L} 2.5281 - 24 NaN NaN 89645 NaN 4369 2121 6488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6493 37.346 NaN 92666 35 0 7587.2 0.261 -1 MPTTERVTL 9 40 532.2761721013312 1062.5377912694623 2 532.276123046875 MULTI HCD FTMS 0 0 0 6488 38744.41796875 0.6545448222235729 -11 0.278228759765625 5 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 16.149105407346934 0.22083165093524068 1 T{I|L} 2 -1 22.831 0 0 2.1487 0 0 830.3990956037125 0 830.3990956037125 0 5.383643918355357 0 0 0 0.4247425010840047 0 0 0 T{I|L} 2.1487 + + 13 NaN NaN 117398 NaN 4370 2121 6488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6495 37.352 NaN 836400 35 0 291990 0.327 + 31949 VYPDGIRHI 9 61 535.2930675130516 1068.571582092903 2 535.2930908203125 MULTI HCD FTMS 0 0 0 6494 393985.1875 0.7876706663114685 2 -0.0563507080078125 1 Unmodified _VYPDGIRHI_ ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF 47.594388314883695 0.03493607795751234 1 VYPD{[VA]|[{I|L}G]}RH{I|L} 9 0 + 69.9 0 0 6.5414 6.5414 90.647 0 0 0 50.435684192257995 6.7074145675533 6.7074145675533 12.698405410982616 0 1.8539171939081172 2 0.4247425010840047 0 + + VYPD{[VA]|[{I|L}G]}RH{I|L};VYP[TP]SRH{I|L};VYP{[RE]|[WV]}[VG]H{I|L};[YV]PD{[VA]|[{I|L}G]}RH{I|L};[DP][YV]{[VA]|[{I|L}G]}RH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ET]|[MV]}{[VA]|[{I|L}G]}RH{I|L} 6.5414;5.3531;4.6709;4.0758;1.4796;1.0331 +;-;-;+;-;- + 193 + NaN NaN 221293 NaN 4371 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6496 37.356 NaN 297860 35 0 47173 0.263 + 20749 PGGAKQHI 8 51 404.22721379405806 806.4398746549161 2 404.22723388671875 MULTI HCD FTMS 0 0 0 6494 80101.171875 0.594724403958878 2 -0.0563507080078125 2 Unmodified _PGGAKQHI_ REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF 13.50788311687929 0.4944073034352369 1 PDG{I|L}RH{I|L} 7 -1 + 89.606 0 0 11.111 11.111 97.329 0 0 0 80.32471807271654 16.320232147054057 16.320232147054057 20.400742479681128 0 2.004432191740108 1.6989700043360187 0.28872548999643577 0 PDG{I|L}RH{I|L};[DP]G{I|L}RH{I|L};P{[RE]|[WV]}[VG]H{I|L};[PS][TP]RH{I|L};{[HG]|PP}[R{I|L}][DP]{I|L} 11.111;8.5816;4.4754;3.968;1.2427 -;-;-;-;- 120 + NaN NaN 148343.3 NaN 4372 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6497 37.359 NaN 93263 35 0 6045.5 0.261 + 28666 TSDPTEATAV 10 42 496.2322847093945 990.450016485589 2 496.2153015136719 MULTI HCD FTMS 0 0 0 6494 21339.109375 0.9624262079278602 -2 0.049831390380859375 3 Unmodified _TSDPTEATAV_ ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;nc|ENSG00000067225|P14618-3|PKM 12.240655878213236 0.39661705172222156 1 ATAV 4 6 32.964 0 0 3.3282 0 0 630.2481556623062 0 630.2481556623062 0 27.47933455448525 0 0 0 0.8807196863200843 0 0 0 + ATAV 3.3282 + + 18 NaN NaN 101780.6 NaN 4373 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6498 37.363 NaN 19028 35 0 5135.3 0.261 + -1 HCEADEGADGC 11 19 582.1901663935785 1162.3657798539568 2 582.190185546875 MULTI HCD FTMS 0 0 0 6494 5853.064453125 0.313208182543898 13 -0.3649559020996094 4 Carbamidomethyl (C) _HC(Carbamidomethyl (C))EADEGADGC_ REV__ENSG00000133704|ENST00000256079|IPO8;REV__IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;REV__nc|ENSG00000133704|O15397-2|IPO8 0.3070304955306653 0.41757413505135293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87680.1 NaN 4374 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6499 37.366 NaN 41254 35 0 8383.3 0.261 + 18836 NAEDADGKDVF 11 24 590.7592955607396 1179.504038188279 2 590.7593383789062 MULTI HCD FTMS 0 0 0 6494 12219.408203125 0.3149991959293179 -2 0.049831390380859375 5 Unmodified _NAEDADGKDVF_ ENSG00000171155|ENST00000304661|C1GALT1C1 2.0860074813731053 0.4097721463192591 1 V{M(Oxidation (M))|F} 2 9 20.969 0 0 1.7778 0 0 915.3569813459 0 915.3569813459 0 20.969100130080562 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.7778 + + 1 NaN NaN 92993 NaN 4375 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6500 37.369 NaN 53207 35 0 6996.6 0.261 + 15216 LNSPHPGPIR 10 28 544.3038025760915 1086.5930522189828 2 544.30419921875 MULTI HCD FTMS 0 0 0 6494 13292.642578125 0.4794085252564187 -4 0.11612319946289062 6 Unmodified _LNSPHPGPIR_ ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-2|FAM124A 8.745405648335112 0.42901288225909884 1 {I|L}[RP] 3 7 15.458 0 0 1.4226 0 0 702.3452627676141 0 702.3452627676141 0 9.973024840566469 0 0 0 0.5 0 0 0 {I|L}[RP] 1.4226 - 5 + NaN NaN 88107.9 NaN 4376 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6501 37.373 NaN 58693 35 0 12654 0.261 -1 0 20 527.1554602371865 1052.296367541173 2 527.155517578125 MULTI HCD FTMS 0 0 0 6494 12055.8310546875 0.4606392995364716 -10 0.2551689147949219 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85788.9 NaN 4377 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6502 37.376 NaN 11248 35 0 3311.6 0.261 + -1 VYHKPHRGM 9 11 570.7914155218025 NaN 0 570.7881469726562 PEAK HCD FTMS 0 0 0 6494 4167.7587890625 0.4530083156900987 -2 0.049831390380859375 8 Oxidation (M) _VYHKPHRGM(Oxidation (M))_ REV__ENST00000447795.3_1_1:151254188-151254299:-|nuORF 4.75600775471527 0.27219989241163056 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83355 NaN 4378 2122 6494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6504 37.381 NaN 361560 35 0 27294 0.327 + 9010 HPEKLATVL 9 68 504.2977957027317 1006.5810384722635 2 504.2978515625 MULTI HCD FTMS 0 0 0 6503 122558.2890625 0.055449847608064186 31 -0.8794746398925781 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 26.268140514670165 0.13340543277302316 1 HP 2 7 23.583 0 0 2.3429 0 0 0 769.4462374322874 769.4462374322874 6.984615597275404 0 0 0 0 0.5 0 0 0 + HP 2.3429 + + 53 + NaN NaN 144499.3 NaN 4379 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6505 37.386 NaN 156560 35 0 11018 0.261 + 26887 SYISRTNQL 9 49 541.2853828772801 1080.55621282136 2 541.2853393554688 MULTI HCD FTMS 0 0 0 6503 67641.1640625 0.07095991493401715 14 -0.391510009765625 2 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 73.1962812333195 0.00805395026373928 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L} 9 0 + 75.385 0 0 6.9765 6.9765 89.725 0 0 0 7.147642715192504 68.39570963353275 7.147642715192504 9.208187539523749 0 2.555462187404089 0 0 0.4247425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTN[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGG[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[HA][VG]TNQ{I|L} 6.9765;6.1244;6.1244;5.2762;2.9601 +;-;-;-;- + 269 NaN NaN 122805.6 NaN 4380 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6506 37.389 NaN 88472 35 0 13257 0.261 + 26413 STDYETHEF 9 35 564.7274462363317 1127.4403395394634 2 564.7271728515625 MULTI HCD FTMS 0 0 0 6503 38403.13671875 0.7594904018108732 -1 0.029842376708984375 3 Unmodified _STDYETHEF_ ENSG00000163069|ENST00000381431|SGCB;nc|ENSG00000163069|Q16585-2|SGCB 39.94969957227396 0.06557568441294001 1 {[MG]|[TS]}DYET 6 3 42.396 0 0 3.7604 0 0 0 428.1569002740844 428.1569002740844 42.39577516576787 0 0 0 0 1.8494850021680094 0 0 0 + {[MG]|[TS]}DYET 3.7604 + + 75 + NaN NaN 118612.3 NaN 4381 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6507 37.393 NaN 86032 35 0 5078.6 0.261 + 28667 TSDPTEATAV 10 41 496.2322847093945 990.450016485589 2 496.2324523925781 MULTI HCD FTMS 0 0 0 6503 20950.236328125 0.9448874435262058 -1 0.029842376708984375 4 Unmodified _TSDPTEATAV_ ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;nc|ENSG00000067225|P14618-3|PKM 13.042465956692817 0.38911719078024076 1 ATAV 4 6 33.972 0 0 3.43 0 0 630.250780174025 0 630.250780174025 0 26.982522177562203 0 0 0 0.805462187404089 0 0 0 + ATAV 3.43 + + 48 NaN NaN 96531.9 NaN 4382 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6508 37.396 NaN 69864 35 0 9611.5 0.261 -1 YRDCIMLCCL 10 24 473.8673405273594 1418.580192182278 3 473.8673095703125 MULTI HCD FTMS 0 0 0 6503 27527.744140625 0.6696705424699128 3 -0.07622909545898438 5 3 Carbamidomethyl (C),Oxidation (M) _YRDC(Carbamidomethyl (C))IM(Oxidation (M))LC(Carbamidomethyl (C))C(Carbamidomethyl (C))L_ ENSG00000132164|ENST00000254488|SLC6A11 1.7422754331352037 0.46608156381052757 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87581.9 NaN 4383 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6509 37.399 NaN 65129 35 0 6608.7 0.261 + 28795 TTQGLDGLSER 11 24 588.7941554447403 1175.5737579562806 2 588.7969360351562 MULTI HCD FTMS 0 0 0 6503 28479.70703125 0.7135525266904262 -4 0.11282730102539062 6 Unmodified _TTQGLDGLSER_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 10.898955630103616 0.3621194540206772 1 D{[VA]|[{I|L}G]}Q[PS] 6 8 20.418 0 0 1.7369 0 0 560.2938099591812 0 560.2938099591812 0 20.41833743429045 0 0 0 0.5 0 0.4247425010840047 0 D{[VA]|[{I|L}G]}Q[PS] 1.7369 - 6 NaN NaN 94284 NaN 4384 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6510 37.403 NaN 24242 35 0 3747.5 0.261 -1 PGPPPCQKAPS 11 18 568.2830709079078 1134.5515888826155 2 568.2835083007812 MULTI HCD FTMS 0 0 0 6503 12874.69921875 0.9781433568462212 3 -0.07622909545898438 7 Carbamidomethyl (C) _PGPPPC(Carbamidomethyl (C))QKAPS_ ENSG00000180043|ENST00000424985|GARIN5B 1.0714618166137932 0.41422159895841093 1 V 1 -1 5.4846 0 0 0.48341 0 0 249.14083556405927 783.3325289361936 1032.473364500253 0 0 0 0 0 0 0 0 0 V 0.48341 - 1 + NaN NaN 89788.9 NaN 4385 2123 6503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6512 37.408 NaN 178810 35 0 28983 0.327 -1 EKECEDTSL 9 37 555.7345023579659 1109.4544517827317 2 555.7344970703125 MULTI HCD FTMS 0 0 0 6511 107501.8125 0.6032393406424601 14 -0.3882484436035156 1 Carbamidomethyl (C) _EKEC(Carbamidomethyl (C))EDTSL_ ENSG00000179912|ENST00000402412|R3HDM2;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000179912|Q9Y2K5|R3HDM2;R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant 29.081581746732265 0.1154664336125038 1 TS{I|L} 3 -1 41.682 0 0 3.757 0 0 790.281877755812 0 790.281877755812 0 34.69273760456403 0 0 0 1 0 0.8494850021680094 0 TS{I|L} 3.757 + + 25 NaN NaN 106005.5 NaN 4386 2124 6511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6513 37.412 NaN 228770 35 0 49455 0.261 -1 0 44 522.2753786736802 1042.5362044141602 2 522.2754516601562 MULTI HCD FTMS 0 0 0 6511 69968.7578125 0.642938417762902 -5 0.13933563232421875 2 NaN NaN 1 {I|L}PG 3 -1 45.802 0 0 4.3933 0 0 0 772.3764132135374 772.3764132135374 22.84318117920506 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}PG 4.3933 - 10 + NaN NaN 116736.8 NaN 4387 2124 6511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6514 37.416 NaN 199990 35 0 29043 0.261 + 35160 YVHMVTHF 8 50 525.247264992183 1048.4799770511659 2 525.2471923828125 MULTI HCD FTMS 0 0 0 6511 65996.546875 0.538510555371892 14 -0.3882484436035156 3 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 67.03532852164291 0.03311693449179614 1 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 74.832 0 0 7.1372 7.1372 93.312 0 0 0 21.989700043360187 16.40978057358332 16.40978057358332 21.989700043360187 0 2.1747425010840047 2 0 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F};[YV][NG]{[ES]|[DT]|[{I|L}C]}PH{M(Oxidation (M))|F};[YV][NG]{[ES]|[DT]|[{I|L}C]}HP{M(Oxidation (M))|F};[YV]H{[ES]|[DT]|[{I|L}C]}[NG]P{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[CA]|SS}HP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[CA]|SS}PH{M(Oxidation (M))|F} 7.1372;5.0399;4.8963;4.3706;4.0628;3.8475;2.1527;1.6503 +;-;-;-;-;-;-;- + 199 NaN NaN 114437 NaN 4388 2124 6511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6515 37.419 NaN 115360 35 0 25624 0.261 + 13075 KYLEERAMRQF 11 30 490.92193544926226 1469.7439769479868 3 490.9221496582031 MULTI HCD FTMS 0 0 0 6511 38306.57421875 0.5289257887758048 7 -0.1890106201171875 4 Unmodified _KYLEERAMRQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.9275035174196113 0.4104672908605315 1 KY 2 9 20.969 0 0 1.4267 0 0 0 1175.5640488470926 1175.5640488470926 20.969100130080562 0 0 0 0 0 0 0 0 + KY 1.4267 + + 2 + NaN NaN 114780.3 NaN 4389 2124 6511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6516 37.422 NaN 40912 35 0 4456.7 0.261 + 330 AGGSKKHSNH 10 28 511.7605838999629 1021.5066148667258 2 511.7611083984375 MULTI HCD FTMS 0 0 0 6511 8663.0078125 0.5323083030763149 1 -0.023166656494140625 5 Unmodified _AGGSKKHSNH_ ENSG00000152193|ENST00000282003|OBI1 2.9952420565917617 0.4594494122822477 1 D 1 10 4.6041 0 0 0.45072 0 0 184.22073947785708 719.2325533502561 903.4532928281133 0 0 0 0 0 0 0 0 0 D 0.45072 - 5 + NaN NaN 82882.7 NaN 4390 2124 6511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6517 37.426 NaN 19188 35 0 2747.1 0.261 + -1 PFYLKPQTM 9 16 570.7914155218025 NaN 0 570.7919921875 PEAK HCD FTMS 0 0 0 6511 9200.181640625 1 0 0 6 Oxidation (M) _PFYLKPQTM(Oxidation (M))_ REV__ENST00000522362.6_1_8:26363953-26364022:-|nuORF 3.944395688203298 0.27613285122220627 1 Q 1 -1 8.9794 0 0 0.78797 0 0 266.0911795770049 742.3907564752561 1008.4819360522611 0 0 0 0 0 0.5 0 0 0 Q 0.78797 + + 2 + NaN NaN 95181.2 NaN 4391 2124 6511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6519 37.431 NaN 296430 35 0 38897 0.327 + 31629 VYISEHEHF 9 53 580.7719995076426 1159.529446082085 2 580.7720947265625 MULTI HCD FTMS 0 0 0 6518 141167.8125 0.5541601481205058 -2 0.04967498779296875 1 Unmodified _VYISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 100.37149154755038 0.004254194004462789 1 VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F} 9 0 + 94.904 0 0 8.1847 8.1847 95.538 0 0 0 73.93537046338109 9.137342758552691 9.137342758552691 28.015588501946368 0 2.443672679568534 1.6989700043360187 1.4604093769761874 0 + + VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F};[YV]{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F};[YV]{I|L}S{[YC]|[HE]}{[{M(Oxidation (M))|F}H]|[RQ]}E 8.1847;5.7686;4.2164 +;+;- + 315 + NaN NaN 126269.2 NaN 4392 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6520 37.435 NaN 86344 35 0 14317 0.261 -1 MDIHCFIR 8 30 546.2589853757394 1090.5034178182786 2 546.2453002929688 MULTI HCD FTMS 0 0 0 6518 11692.904296875 0.949974976301272 2 -0.053070068359375 2 Carbamidomethyl (C) _MDIHC(Carbamidomethyl (C))FIR_ ENST00000430710.7_1_14:21859996-21860044:-|nuORF 5.230669730166228 0.5342319408533849 1 M{I|L}DSER 6 -1 41.146 0 0 3.7732 0 0 0 356.1254061334594 356.1254061334594 38.672137691284405 0 0 0 0 0 0 0 0 M{I|L}DSER 3.7732 - 39 + NaN NaN 95111.9 NaN 4393 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6521 37.439 NaN 42065 35 0 5152.7 0.261 -1 HPVLKEMEVQ 10 21 613.3160552948816 1224.6175576565631 2 613.3164672851562 MULTI HCD FTMS 0 0 0 6518 17292.2265625 0.05319197766624486 40 -1.1531333923339844 3 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4137667291624 888.4137667291624 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 4 + NaN NaN 92350.1 NaN 4394 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6522 37.442 NaN 43579 35 0 6860.3 0.262 -1 SPQADDQDM 9 29 511.6908871171018 1021.3672213010036 2 511.6908874511719 MULTI HCD FTMS 0 0 0 6518 12749.31640625 0.4486143410066901 -1 0.023166656494140625 4 Oxidation (M) _SPQADDQDM(Oxidation (M))_ ENSG00000197938|ENST00000355273|OR5H2;ENSG00000230301|ENST00000615035|OR5H6;ENSG00000231192|ENST00000641874|OR5H1;ENSG00000236032|ENST00000641380|OR5H14;nc|ENSG00000230301|Q8NGV6|OR5H6;nc|ENSG00000232535|P0DN80|OR5H8 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F} 1 -1 19.732 0 0 1.9319 0 0 856.3211530410412 0 856.3211530410412 0 9.274400170273578 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.9319 + + 4 + NaN NaN 85487.3 NaN 4395 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6523 37.446 NaN 18690 35 0 6640.6 0.261 + 9576 HRRRQNMYE 9 11 645.3172842921159 1288.6200156510317 2 645.3169555664062 MULTI HCD FTMS 0 0 0 6518 2482.0029296875 0.14543577325951745 -1 0.023166656494140625 5 Unmodified _HRRRQNMYE_ REV__ERBB3|p.R1202Q|1|0.31|ENSG00000065361|chr12:56101631-56101631|G/A|missense_variant 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85908.6 NaN 4396 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6524 37.449 NaN 17719 35 0 5262.3 0.261 + -1 RHWECPCCY 9 17 627.2334926273314 NaN 0 627.2340087890625 PEAK HCD FTMS 0 0 0 6518 5514.08984375 0.6371114927171581 -7 0.19564056396484375 6 Carbamidomethyl (C) _RHWEC(Carbamidomethyl (C))PCCY_ REV__ENSG00000178295|ENST00000381254|GEN1 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91586.2 NaN 4397 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6525 37.452 NaN 16534 35 0 3520 0.261 + 26311 SRTKRWMRN 9 18 617.8330078125 NaN 0 617.8330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SRTKRWMRN_ REV__ENSG00000091704|ENST00000011292|CPA1;REV__ENSG00000158516|ENST00000222481|CPA2 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80909.1 NaN 4398 2125 6518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6527 37.458 NaN 950120 35 0 101370 0.327 + 1532 AYVHMVTHF 9 77 560.7657570063983 1119.5169610795965 2 560.765869140625 MULTI HCD FTMS 0 0 0 6526 447566.53125 0.4559263976778205 16 -0.4580421447753906 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 103.11 0 0 9.2106 9.2106 88.646 0 0 0 0.7390874094431865 0.7390874094431865 0.7390874094431865 0.7390874094431865 0 3.048455006504028 1.6989700043360187 0.5796896906561032 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]V{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9.2106;9.1446;8.2969;6.3759;6.0398;5.8392;5.4645;5.1814;4.8799;4.8548 +;+;-;-;-;-;-;-;-;- + 1283 + NaN NaN 233116.3 NaN 4399 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6528 37.462 NaN 476540 35 0 73425 0.261 + 26119 SPLGKEDTL 9 56 480.2558055089815 958.497058084763 2 480.2557678222656 MULTI HCD FTMS 0 0 0 6526 348018.53125 0.619058321016011 3 -0.07961273193359375 2 Unmodified _SPLGKEDTL_ ENSG00000155561|ENST00000285968|NUP205 80.6760300276096 0.005633624786464751 1 SP{I|L}S{I|L}NDT{I|L} 9 3 + 76.889 0 0 8.0219 8.0219 94.491 0 0 0 40.77500619321228 10.391362274856917 10.391362274856917 19.94386806657971 0 2.1237125054200234 1.6989700043360187 1.1549471895720984 0 SP{I|L}S{I|L}NDT{I|L};SP{I|L}[DV]{[QS]|[NT]}T{I|L};{I|L}[PS]S{I|L}NDT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}[NS][VP]T{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}[NS]{I|L}{I|L}PS;{[ES]|[DT]|[{I|L}C]}{I|L}[NS]{I|L}[PS]{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}E[KG]{I|L}PS;{[ES]|[DT]|[{I|L}C]}{I|L}E[KG][PS]{I|L} 8.0219;5.9411;3.4301;2.7594;2.1167;1.9976;1.1758;1.0567 -;-;-;-;-;-;-;- 226 + NaN NaN 166884.6 NaN 4400 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6529 37.466 NaN 154810 35 0 12323 0.261 + 9842 HYRSHHPTL 9 38 574.2907481779872 1146.5669434227743 2 574.2911376953125 MULTI HCD FTMS 0 0 0 6526 46506.83203125 0.010526925851588076 72 -1.9924545288085938 3 Unmodified _HYRSHHPTL_ ENSG00000158966|ENST00000651257|CACHD1;nc|ENSG00000158966|Q5VU97-2|CACHD1 16.149105407346934 0.22083165093524068 1 VT{I|L} 3 7 32.435 0 0 2.8289 0 0 815.3550098001629 0 815.3550098001629 0 12.74227503252014 0 0 0 0.4247425010840047 0 0.5 0 VT{I|L} 2.8289 - 20 NaN NaN 102952.7 NaN 4401 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6530 37.469 NaN 88092 35 0 31364 0.261 -1 RYLEKPMEI 9 19 597.8130841336915 1193.611615334183 2 597.8130493164062 MULTI HCD FTMS 0 0 0 6526 51007.65234375 0.10712492245765459 61 -1.6920204162597656 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 KA 2 -1 11.454 0 0 0.95958 0 0 504.22502461747666 487.23081384830317 991.4558384657798 0 0 0 0 0 0.5 0 0 0 KA 0.95958 - 7 + NaN NaN 91003 NaN 4402 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6531 37.472 NaN 73129 35 0 6952.1 0.261 + 9001 HPEGLLSPHL 10 33 550.2984081761455 1098.5822634190909 2 550.2988891601562 MULTI HCD FTMS 0 0 0 6526 26080.853515625 0.6773356326790194 1 -0.026515960693359375 5 Unmodified _HPEGLLSPHL_ REV__ENSG00000105122|ENST00000343625|RASAL3;REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF;REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 13.042465956692817 0.38911719078024076 1 EC{I|L} 3 -1 30.005 0 0 2.7313 0 0 735.4272938459 0 735.4272938459 0 25.400990676322905 0 0 0 0 0 0.3807196863200844 0 EC{I|L} 2.7313 - 7 NaN NaN 106270.8 NaN 4403 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6532 37.475 NaN 119960 35 0 21916 0.261 + 16090 LPSSQREVL 9 37 514.7901961808788 1027.5658394285574 2 514.7905883789062 MULTI HCD FTMS 0 0 0 6526 40047.05078125 0.2926204094018993 -4 0.10607147216796875 6 Unmodified _LPSSQREVL_ ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF 32.78568957990786 0.09846250359632436 1 {I|L}PS 3 6 56.682 0 0 5.5162 0 0 0 727.3731783502561 727.3731783502561 41.448565749036064 0 0 0 0 0.5 1.6989700043360187 0.8494850021680094 0 + {I|L}PS 5.5162 + + 37 + NaN NaN 112899.2 NaN 4404 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6533 37.479 NaN 101930 35 0 21922 0.262 + 11199 IYKEEREYF 9 33 426.2115461321167 1275.6128089965503 3 426.2117004394531 MULTI HCD FTMS 0 0 0 6526 27590.474609375 0.5739721720469673 -3 0.07622909545898438 7 Unmodified _IYKEEREYF_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 8.444304893310646 0.2870029342618836 1 {I|L}YK 3 6 46.198 0 0 3.6216 0 0 0 868.3512667291624 868.3512667291624 25.713337517843655 0 0 0 0 0 2 0 0 + {I|L}YK 3.6216 + + 4 + NaN NaN 102245.2 NaN 4405 2126 6526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6535 37.484 NaN 431400 35 0 81273 0.327 + 25985 SPDSGVYEM 9 44 500.7000073297071 999.3854617262142 2 500.7001037597656 MULTI HCD FTMS 0 0 0 6534 159674.390625 0.8758279160243473 -2 0.053070068359375 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 92.4914307365334 0.004460681868130716 1 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 81.947 0 0 8.1998 8.1998 93.953 0 0 0 7.447274948966935 67.24214396804989 7.447274948966935 14.515449934959719 0 2.6307196863200843 0 1.579689690656103 0 [DP]SSGVYE{M(Oxidation (M))|F};[DP]SSGVEY{M(Oxidation (M))|F} 8.1998;6.7473 -;- 318 NaN NaN 144154.8 NaN 4406 2127 6534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6536 37.489 NaN 164740 35 0 32156 0.261 + 23971 RVPNEEDPSL 10 45 578.2875389948524 1154.5605250565047 2 578.28564453125 MULTI HCD FTMS 0 0 0 6534 82650.7265625 0.9625836562025557 3 -0.07631301879882812 2 Unmodified _RVPNEEDPSL_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 40.72490554402381 0.1391161235525472 1 EDPS{I|L} 5 5 52.735 0 0 4.5675 0 0 595.3098011701187 0 595.3098011701187 0 44.66312853471372 0 0 0 1.3807196863200843 0 0.8494850021680094 0 + EDPS{I|L} 4.5675 + + 103 NaN NaN 114277.1 NaN 4407 2127 6534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6537 37.492 NaN 141810 35 0 32027 0.264 -1 0 38 406.91523338885463 1217.7238707667639 3 406.9153137207031 MULTI HCD FTMS 0 0 0 6534 48844.03125 0.24817375810231845 24 -0.6870498657226562 3 NaN NaN 1 KY 2 -1 25.969 0 0 2.1326 0 0 0 923.5429928359254 923.5429928359254 8.979400086720375 0 0 0 0 0.5 0 0 0 KY 2.1326 - 5 + NaN NaN 99021.8 NaN 4408 2127 6534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6538 37.495 NaN 110020 35 0 26413 0.261 + 33604 YISEHEHF 8 41 531.238269479948 1060.461986026696 2 531.23828125 MULTI HCD FTMS 0 0 0 6534 44962.71875 0.8560165764649834 1 -0.02327728271484375 4 Unmodified _YISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 38.15118350030904 0.25467990583502337 1 [Y{I|L}]{[ES]|[DT]|[{I|L}C]}HEH{M(Oxidation (M))|F} 8 0 + 44.614 0 0 4.2071 4.2071 89.594 0 0 0 25.150312510170778 8.979400086720375 8.979400086720375 44.614262661931434 0 1.274227503252014 2 0.4247425010840047 0 + + [Y{I|L}]{[ES]|[DT]|[{I|L}C]}HEH{M(Oxidation (M))|F} 4.2071 + + 25 + NaN NaN 98215.8 NaN 4409 2127 6534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6539 37.499 NaN 123910 35 0 11478 0.261 + 23960 RVHPDYVIT 9 38 550.2984081761455 1098.5822634190909 2 551.2841796875 MULTI HCD FTMS 0 0 0 6534 4997.56591796875 0.9355507483663763 4 -0.11277389526367188 5 Unmodified _RVHPDYVIT_ ENSG00000080166|ENST00000377028|DCT;ENST00000472871.1_1_13:95120883-95131509:-|nuORF;nc|ENSG00000080166|P40126-2|DCT 6.723162845929126 0.3000504726104499 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TT 8 7 16.119 0 0 1.4673 0 0 0 126.10176960489083 126.10176960489083 8.672137691284407 0 0 0 0 0 0 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TT 1.4673 - 98 NaN NaN 97203.6 NaN 4410 2127 6534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6540 37.502 NaN 52755 35 0 7671.6 0.262 + 23645 RPVELSDRETL 11 34 438.90490248141015 1313.6928780444305 3 438.9050598144531 MULTI HCD FTMS 0 0 0 6534 13979.8974609375 0.7065928159140918 -1 0.026515960693359375 6 Unmodified _RPVELSDRETL_ ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4 3.5926746625661337 0.403164415885289 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99966.9 NaN 4411 2127 6534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6542 37.507 NaN 126750 35 0 23572 0.327 -1 SSGPVDPMM 9 27 476.69134176815527 951.3681306031106 2 476.6910400390625 MULTI HCD FTMS 0 0 0 6541 41228.76953125 0.6046349773322715 -15 0.38787841796875 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 1 {I|L}D 2 -1 17.206 0 0 1.8086 0 0 296.0577190814293 424.1833079544277 720.241027035857 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}D 1.8086 - 6 + NaN NaN 106032.8 NaN 4412 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6543 37.512 NaN 107960 35 0 15390 0.261 + 19073 NELVSTHGY 9 28 510.244229278083 1018.4739056229661 2 510.24273681640625 MULTI HCD FTMS 0 0 0 6541 36975.23828125 0.6136470102858598 -12 0.32163238525390625 2 Unmodified _NELVSTHGY_ ENSG00000105325|ENST00000441788|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 24.990960013464015 0.14443998892849796 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V 4 5 35.445 0 0 3.4802 0 0 0 560.212866258159 560.212866258159 35.44531259372398 0 0 0 0 1.5 0 0.4247425010840047 0 + {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V 3.4802 + + 9 NaN NaN 92594 NaN 4413 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6544 37.515 NaN 175190 35 0 12624 0.261 + 17870 MIHEPEPHI 9 55 551.7710625495918 1101.5275721659834 2 551.7711181640625 MULTI HCD FTMS 0 0 0 6541 31510.85546875 0.2765906679242452 -5 0.1260223388671875 3 Unmodified _MIHEPEPHI_ CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENSG00000123975|ENST00000314355|CKS2;ENSG00000173207|ENST00000308987|CKS1B;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF 20.453626601364224 0.18364154288633264 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E 4 7 21.682 0 0 1.9684 0 0 0 588.2792886922601 588.2792886922601 3.2390874094431865 0 0 0 0 0.5 0 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E 1.9684 - 50 NaN NaN 126450.8 NaN 4414 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6545 37.519 NaN 46886 35 0 5854 0.263 + 12376 KPAPLLSR 8 34 441.2822300889465 NaN 0 441.2974853515625 PEAK HCD FTMS 0 0 0 6541 2111.118408203125 0.30773685600342215 -3 0.07634735107421875 4 Unmodified _KPAPLLSR_ REV__ENSG00000132938|ENST00000612955|MTUS2 2.0597508629832335 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.79379 0 0 489.8133787796524 330.69773279361567 820.5111115732681 0 0 0 0 0 0 0 0 0 G 0.79379 - 1 + NaN NaN 83756.1 NaN 4415 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6546 37.522 NaN 52770 35 0 5432.9 0.261 + -1 TACFRHCP 8 34 496.21462743348246 990.414701933765 2 496.2152404785156 MULTI HCD FTMS 0 0 0 6541 14014.19921875 0.5437057422183103 3 -0.08949661254882812 5 Carbamidomethyl (C) _TACFRHC(Carbamidomethyl (C))P_ REV__ENSG00000099139|ENST00000674117|PCSK5;REV__nc|ENSG00000099139|Q92824-2|PCSK5;REV__nc|ENSG00000099139|Q92824|PCSK5 2.302733041254933 0.5385759549224092 1 A 1 -1 1.1092 0 0 0.112 0 0 477.6428646308337 438.7072847955688 916.3501494264025 0 0 0 0 0 0 0 0 0 A 0.112 + + 3 + NaN NaN 88477.4 NaN 4416 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6547 37.525 NaN 83027 35 0 20185 0.261 -1 0 34 527.1554602371865 1052.296367541173 2 527.155517578125 MULTI HCD FTMS 0 0 0 6541 11494.0087890625 0.43917272342674174 -4 0.09951400756835938 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4715 0 0 887.2505129042573 0 887.2505129042573 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4715 - 3 + NaN NaN 95240.5 NaN 4417 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6548 37.529 NaN 82218 35 0 14481 0.261 + -1 EMDLARSRV 9 30 546.7763030705011 1091.538053207802 2 546.2731323242188 MULTI HCD FTMS 0 0 0 6541 2621.9814453125 0.14728896287171975 -1 0.02327728271484375 7 Oxidation (M) _EM(Oxidation (M))DLARSRV_ REV__CON__Q9TRI1 1.6526216038709556 0.33848895094777925 1 PDR 3 -1 16.198 0 0 1.484 0 0 148.12912477579465 572.1983126275999 720.3274374033945 0 0 0 0 0 0 0 0 0 PDR 1.484 - 6 + NaN NaN 112030.3 NaN 4418 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6549 37.532 NaN 55962 35 0 6113.4 0.261 + 20754 PGGPSSATGPL 11 30 470.7402680932415 939.4659832532831 2 471.255615234375 MULTI HCD FTMS 0 0 0 6541 5100.5615234375 0.7555901533820634 -1 0.02327728271484375 8 Unmodified _PGGPSSATGPL_ ENST00000578287.1_1_17:80350276-80350759:-|nuORF 4.897010918128616 0.3974440401582579 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85726.8 NaN 4419 2128 6541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6551 37.537 NaN 324570 35 0 25205 0.327 + 9011 HPEKLATVL 9 72 504.2977957027317 1006.5810384722635 2 504.2978820800781 MULTI HCD FTMS 0 0 0 6550 117410.7578125 0.053120916406807855 37 -1.0767822265625 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 32.78568957990786 0.09846250359632436 1 YQTV{I|L} 5 6 25.411 0 0 2.5245 0 0 384.24711806465 0 384.24711806465 0 1.8276657120102193 0 0 0 0.3494850021680094 0 0.7302046884880937 0 YQTV{I|L} 2.5245 - 110 NaN NaN 126616.8 NaN 4420 2129 6550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6552 37.542 NaN 140880 35 0 19021 0.262 + 32026 VYPLQPEYTL 10 35 408.21824612799907 1221.6329089841972 3 408.2060546875 MULTI HCD FTMS 0 0 0 6550 2133.66455078125 0.3927529173043282 2 -0.0596771240234375 2 Unmodified _VYPLQPEYTL_ REV__ENSG00000104067|ENST00000614355|TJP1;REV__nc|ENSG00000104067|Q07157-2|TJP1;REV__nc|ENSG00000104067|Q07157|TJP1 1.9063754702782614 0.46521295622613185 1 {I|L} 1 -1 14.604 0 0 1.1955 0 0 1090.5386229507972 0 1090.5386229507972 0 0 0 0 0 0 0 0 0 {I|L} 1.1955 + + 10 + NaN NaN 121960.3 NaN 4421 2129 6550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6553 37.545 NaN 110670 35 0 6816.5 0.261 -1 EMVTIKLKC 9 45 540.7931181493994 1079.5716833655988 2 541.2853393554688 MULTI HCD FTMS 0 0 0 6550 3943.547607421875 0.7417098866237225 3 -0.09292984008789062 3 Oxidation (M) _EM(Oxidation (M))VTIKLKC_ ENSG00000124201|ENST00000396105|ZNFX1 10.073929032068715 0.27331982688540024 1 E{M(Oxidation (M))|F} 2 -1 22.831 0 0 2.1148 0 0 785.4827684259488 0 785.4827684259488 0 12.373343961715547 0 0 0 0 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 2.1148 + + 33 + NaN NaN 95302.4 NaN 4422 2129 6550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6554 37.549 NaN 140570 35 0 10186 0.261 -1 MPTTERVTL 9 51 532.2761721013312 1062.5377912694623 2 532.2762451171875 MULTI HCD FTMS 0 0 0 6550 37610.1015625 0.6353817796641767 -3 0.07961273193359375 4 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 16.149105407346934 0.22083165093524068 1 [Y{I|L}]{[RE]|[WV]}RT 6 -1 22.598 0 0 2.1268 0 0 0 241.06378200151758 241.06378200151758 5.809655611727358 0 0 0 0 0.5 1.5228787452803376 0.5 0 [Y{I|L}]{[RE]|[WV]}RT 2.1268 - 31 NaN NaN 98420.8 NaN 4423 2129 6550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6555 37.552 NaN 36804 35 0 4648.6 0.261 + 506 ANPWDGKSL 9 26 494.248433679444 986.4823144256881 2 494.24908447265625 MULTI HCD FTMS 0 0 0 6550 22241.751953125 0.8081988367045849 3 -0.09292984008789062 5 Unmodified _ANPWDGKSL_ ENSG00000053371|ENST00000235835|AKR7A2;ENST00000492217.1_1_1:19634582-19638531:-|nuORF 3.5964929083625545 0.32375295897743744 1 S{I|L} 2 7 18.583 0 0 1.8838 0 0 768.35453993965 0 768.35453993965 0 12.641368885835218 0 0 0 0 0 0 0 + S{I|L} 1.8838 + + 2 NaN NaN 101754.4 NaN 4424 2129 6550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6556 37.555 NaN 57204 35 0 7793.2 0.261 + -1 CVPVHPHLM 9 34 553.2670275513002 NaN 0 553.2680053710938 PEAK HCD FTMS 0 0 0 6550 16349.6640625 1 0 0 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VPVHPHLM(Oxidation (M))_ REV__ENST00000245304.4_1_13:98117480-98117684:+|nuORF 5.230669730166228 0.26989974671959066 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.36028 0 0 592.2875208235004 362.18209152094914 954.4696123444495 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.36028 + + 5 + NaN NaN 90981.3 NaN 4425 2129 6550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6558 37.56 NaN 559410 35 0 63929 0.327 + 21980 QETAVTQTY 9 58 520.7487808556734 1039.4830087781468 2 520.748291015625 MULTI HCD FTMS 0 0 0 6557 125932.9609375 0.942701507955705 1 -0.03646087646484375 1 Unmodified _QETAVTQTY_ ENSG00000115414|ENST00000354785|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-2|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1 34.93206674587334 0.08860942999206235 1 [QT]TTPTQTY 9 3 + 52.031 0 0 5.0054 5.0054 86.282 0 0 0 5.602802969692746 36.167053245199625 5.602802969692746 9.208187539523749 0 1.5924778212679485 0 0.3252574989159953 0 [QT]TTPTQTY;[QT]TTPT[AG]TY;[QT][HQ]N[H{I|L}]Y 5.0054;4.1196;1.7446 -;-;- 196 NaN NaN 171860.8 NaN 4426 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6559 37.565 NaN 250640 35 0 50361 0.261 -1 PLKVYCNM 8 45 520.7487808556734 1039.4830087781468 2 522.2754516601562 MULTI HCD FTMS 0 0 0 6557 12669.810546875 0.6395425736791659 -1 0.02321624755859375 2 Carbamidomethyl (C),Oxidation (M) _PLKVYC(Carbamidomethyl (C))NM(Oxidation (M))_ ENSG00000174469|ENST00000361727|CNTNAP2 10.183394434864962 0.5188676124868831 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3448 0 0 874.4373830230671 0 874.4373830230671 0 -0.9691001300805624 -0.9691001300805624 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3448 + + 24 + NaN NaN 118197.7 NaN 4427 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6560 37.568 NaN 111770 35 0 19210 0.261 -1 MEEEAGQTSI 10 38 555.7345023579659 1109.4544517827317 2 555.7346801757812 MULTI HCD FTMS 0 0 0 6557 57432.78125 0.3222802693909244 20 -0.5842018127441406 3 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 19.361941925380144 0.3300069447713393 1 W{M(Oxidation (M))|F}QTS{I|L} 6 -1 46.987 0 0 4.2352 0 0 329.1157704084 0 329.1157704084 0 34.68002299681771 0 0 0 1 0 0.5 0.3807196863200844 W{M(Oxidation (M))|F}QTS{I|L} 4.2352 - 38 NaN NaN 103365.4 NaN 4428 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6561 37.572 NaN 173780 35 0 28825 0.261 + 21225 PQTYGVTHF 9 50 525.2583763488052 1048.5021997644103 2 525.2474975585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PQTYGVTHF_ REV__ENST00000455904.5_2_3:13522657-13522876:+|nuORF 10.073929032068715 0.27331982688540024 1 [YV]H[VS][NS]P{M(Oxidation (M))|F} 9 -1 + 39.6 0 0 3.7768 3.7768 88.951 0 0 0 5.509074688805811 9.24497447517205 5.509074688805811 39.59954981438067 0 0 2 0.4247425010840047 0 [YV]H[VS][NS]P{M(Oxidation (M))|F} 3.7768 - 204 NaN NaN 111084.9 NaN 4429 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6562 37.575 NaN 123930 35 0 16698 0.261 + 3501 EHSVHLIPR 9 36 544.3038025760915 1086.5930522189828 2 544.3040161132812 MULTI HCD FTMS 0 0 0 6557 13605.552734375 0.49069385062824766 4 -0.12618255615234375 5 Unmodified _EHSVHLIPR_ REV__ENSG00000135424|ENST00000257879|ITGA7;REV__nc|ENSG00000135424|Q13683-10|ITGA7;REV__nc|ENSG00000135424|Q13683-13|ITGA7;REV__nc|ENSG00000135424|Q13683-3|ITGA7;REV__nc|ENSG00000135424|Q13683-9|ITGA7;REV__nc|ENSG00000135424|Q13683|ITGA7 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4251 0 0 921.5142233389032 0 921.5142233389032 0 3.037275116073344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4251 - 21 + NaN NaN 94889.1 NaN 4430 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6563 37.578 NaN 71786 35 0 13876 0.261 + 13076 KYLEERAMRQF 11 24 490.92193544926226 1469.7439769479868 3 490.9222412109375 MULTI HCD FTMS 0 0 0 6557 14249.072265625 0.19674695378346158 13 -0.3850669860839844 6 Unmodified _KYLEERAMRQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 1 KY 2 9 20.969 0 0 1.4267 0 0 0 1175.5632447863607 1175.5632447863607 20.969100130080562 0 0 0 0 0 0 0 0 + KY 1.4267 + + 1 + NaN NaN 101669.2 NaN 4431 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6564 37.582 NaN 65195 35 0 15142 0.261 -1 0 39 527.1554602371865 1052.296367541173 2 527.1554565429688 MULTI HCD FTMS 0 0 0 6557 20300.96875 0.7756764326318106 -2 0.053035736083984375 7 NaN NaN 1 {I|L} 1 -1 1.9897 0 0 0.18908 0 0 574.0843141737886 362.1025484674438 936.1868626412324 0 0 0 0 0 0 0 0 0 {I|L} 0.18908 - 5 + NaN NaN 90221.2 NaN 4432 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6565 37.585 NaN 43442 35 0 4736.5 0.261 -1 MFWSCIMC 8 29 547.2038861614656 1092.393219389731 2 547.204345703125 MULTI HCD FTMS 0 0 0 6557 20388.388671875 1 0 0 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))FWSC(Carbamidomethyl (C))IMC_ ENST00000373304.3_1_X:77528630-77528690:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94971.1 NaN 4433 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6566 37.588 NaN 57544 35 0 13764 0.261 -1 RQAMALRGQE 10 26 588.3012996741105 1174.588046415021 2 588.79443359375 MULTI HCD FTMS 0 0 0 6557 16913.66796875 0.6346128873683881 -3 0.07631301879882812 9 Oxidation (M) _RQAM(Oxidation (M))ALRGQE_ ENSG00000137877|ENST00000320955|SPTBN5 5.731851221503515 0.44496410492002586 1 D 1 -1 6.9897 0 0 0.59508 0 0 499.27031067458967 557.2664888971311 1056.5367995717208 0 0 0 0 0 0 0 0 0 D 0.59508 - 7 + NaN NaN 99639 NaN 4434 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6567 37.592 NaN 16368 35 0 4597.5 0.261 + 9834 HYPQRRSCW 9 15 616.7900494785625 1231.565546023925 2 616.7903442382812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _HYPQRRSCW_ ENST00000328965.8_2_11:120099983-120100535:+|nuORF 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85281.5 NaN 4435 2130 6557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6569 37.597 NaN 213510 35 0 28939 0.327 + 31630 VYISEHEHF 9 37 580.7719995076426 1159.529446082085 2 580.772216796875 MULTI HCD FTMS 0 0 0 6568 116161.5390625 0.4559969765967785 4 -0.11959457397460938 1 Unmodified _VYISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 71.13359017698441 0.008721403657255008 1 VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F} 9 0 + 81.393 0 0 7.0194 7.0194 95.312 0 0 0 60.42342188037523 9.137342758552691 9.137342758552691 81.39252201045579 0 2.079689690656103 2 0.7742275032520141 0 + + VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F} 7.0194 + + 49 + NaN NaN 133972.8 NaN 4436 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6570 37.601 NaN 164320 35 0 22753 0.261 + 21717 QADPREPQF 9 50 544.261922229402 1086.5092915256039 2 544.2616577148438 MULTI HCD FTMS 0 0 0 6568 66853.34375 0.5580997539065453 -3 0.08949661254882812 2 Unmodified _QADPREPQF_ ENSG00000184014|ENST00000328194|DENND5A;ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A 55.50274090549119 0.023872834264864425 1 [QA]D[HV]E{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 9 3 + 33.636 0 0 3.0957 3.0957 80.984 0 0 0 9.009461452434245 25.67673395694414 9.009461452434245 3.9794000867203785 0 0.8807196863200843 0 0.5 0.9247425010840047 [QA]D[HV]E{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};[QA]D[HV]Q{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 3.0957;2.7295 -;- 100 NaN NaN 122670.1 NaN 4437 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6571 37.605 NaN 50353 35 0 4622.7 0.261 -1 HPVLKEMEVQ 10 29 613.3159539454991 1224.6173549577982 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6568 18726.59765625 0.11094571113012505 -15 0.4111289978027344 3 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2622 0 0 891.4310169904312 0 891.4310169904312 0 15.45757490560675 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.2622 - 6 NaN NaN 102527.3 NaN 4438 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6572 37.608 NaN 66440 35 0 12536 0.263 -1 0 32 492.2615775454914 982.5086021577828 2 492.2622375488281 MULTI HCD FTMS 0 0 0 6568 23008.373046875 0.9053544184061908 -5 0.13928985595703125 4 NaN NaN 1 {I|L}P 2 -1 17.959 0 0 1.8279 0 0 0 769.3481539361936 769.3481539361936 17.95880017344075 0 0 0 0 0 0 0 0 {I|L}P 1.8279 - 1 + NaN NaN 119849.5 NaN 4439 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6573 37.612 NaN 27964 35 0 5065.9 0.261 -1 CFRDHFFDRG 10 24 452.8700422802619 NaN 0 452.8695068359375 PEAK HCD FTMS 0 0 0 6568 13256.2666015625 0.6825591531417775 -3 0.08949661254882812 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))FRDHFFDRG_ ENSG00000134440|ENST00000256854|NARS1;ENST00000411676.6_1_18:55274615-55283204:-|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86733.3 NaN 4440 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6574 37.615 NaN 47169 35 0 4532.6 0.261 -1 QPDEEPMDM 9 31 554.2021363005462 NaN 0 554.20263671875 PEAK HCD FTMS 0 0 0 6568 11582.9970703125 0.6805461059082427 2 -0.06980133056640625 6 Oxidation (M) _QPDEEPMDM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 22.736283301280096 0.1690317064107932 1 D 1 -1 15.485 0 0 1.3996 0 0 165.0484853923047 823.2944429986936 988.3429283909984 0 0 0 0 0 0.8494850021680094 0 0 0 D 1.3996 + + 6 + NaN NaN 86209.1 NaN 4441 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6575 37.618 NaN 18761 35 0 3983.6 0.261 + -1 FLCAATLLFMS 11 17 645.3172842921159 1288.6200156510317 2 645.3169555664062 MULTI HCD FTMS 0 0 0 6568 8593.4462890625 0.5035427198997273 5 -0.14943313598632812 7 Carbamidomethyl (C),Oxidation (M) _FLC(Carbamidomethyl (C))AATLLFM(Oxidation (M))S_ REV__ENSG00000174106|ENST00000308330|LEMD3 1.3295316138638542 0.4130897924953357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86466.4 NaN 4442 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6576 37.622 NaN 15991 35 0 2820.7 0.261 + 8008 GFSHWPQLDD 10 14 601.2693984520554 NaN 0 601.268798828125 PEAK HCD FTMS 0 0 0 6568 7463.8291015625 0.5398704445594089 -1 0.03646087646484375 8 Unmodified _GFSHWPQLDD_ REV__ENSG00000142192|ENST00000346798|APP;REV__nc|ENSG00000142192|P05067-10|APP;REV__nc|ENSG00000142192|P05067-11|APP;REV__nc|ENSG00000142192|P05067-3|APP;REV__nc|ENSG00000142192|P05067-4|APP;REV__nc|ENSG00000142192|P05067-5|APP;REV__nc|ENSG00000142192|P05067-6|APP;REV__nc|ENSG00000142192|P05067-7|APP;REV__nc|ENSG00000142192|P05067-8|APP;REV__nc|ENSG00000142192|P05067-9|APP 1.1933415558491238 0.33916295405077446 1 {I|L} 1 -1 6.9897 0 0 0.58222 0 0 248.05935246876066 836.3382052057249 1084.3975576744856 0 0 0 0 0 0 0 0 0 {I|L} 0.58222 + + 1 + NaN NaN 94769.3 NaN 4443 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6577 37.625 NaN 39916 35 0 5711.2 0.261 + 25827 SLSLSRKPNE 10 25 565.8116349168956 1129.6087169005912 2 566.311279296875 MULTI HCD FTMS 0 0 0 6568 3087.07666015625 0.10873297907717565 -8 0.21551895141601562 9 Unmodified _SLSLSRKPNE_ ENSG00000006695|ENST00000261643|COX10 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102513.8 NaN 4444 2131 6568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6579 37.63 NaN 699850 35 0 74663 0.327 + 1533 AYVHMVTHF 9 71 560.7657570063983 1119.5169610795965 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6578 365258.34375 0.3720808176219154 22 -0.6307029724121094 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 103.99 0 0 9.2892 9.2892 89.824 0 0 0 3.068109453757657 3.068109453757657 3.068109453757657 3.068109453757657 0 2.9291746928241125 2 0.6109243748081782 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[Q{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[NP]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9.2892;9.0152;8.2183;6.0677;4.6389;4.4127;3.9245;3.875;3.5805;3.442 +;+;-;-;-;-;-;-;-;- + 1123 + NaN NaN 198208.2 NaN 4445 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6580 37.635 NaN 522140 35 0 65860 0.261 + 25986 SPDSGVYEM 9 56 500.7000073297071 999.3854617262142 2 500.70013427734375 MULTI HCD FTMS 0 0 0 6578 179665.640625 0.985481660483231 3 -0.08634185791015625 2 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 99.79894945604345 0.0042691968066200965 1 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 82.915 0 0 8.2966 8.2966 93.242 0 0 0 15.228787452803374 10 10 11.064921830680703 0 2.504432191740108 1.3010299956639813 1.1549471895720984 0 [DP]SSGVYE{M(Oxidation (M))|F};[DP]SSGVEY{M(Oxidation (M))|F};[PS]DSGVYE{M(Oxidation (M))|F};[PS]DSGVEY{M(Oxidation (M))|F} 8.2966;7.1894;6.7728;5.6656 -;-;+;- + 384 NaN NaN 175637.4 NaN 4446 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6581 37.638 NaN 191180 35 0 30023 0.261 + 16091 LPSSQREVL 9 48 514.7901961808788 1027.5658394285574 2 514.7904052734375 MULTI HCD FTMS 0 0 0 6578 97199.5703125 0.7102290306942962 2 -0.056468963623046875 3 Unmodified _LPSSQREVL_ ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF 31.26834338654808 0.10542797264966089 1 {I|L}PS 3 6 59.169 0 0 5.7582 0 0 0 727.3744703576854 727.3744703576854 44.56485629844558 0 0 0 0 0.9247425010840047 1.5228787452803376 0.8494850021680094 0 + {I|L}PS 5.7582 + + 51 + NaN NaN 111010.9 NaN 4447 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6582 37.641 NaN 84490 35 0 10733 0.261 + 26125 SPLSSSTAPL 10 47 480.2558055089815 958.497058084763 2 480.2557678222656 MULTI HCD FTMS 0 0 0 6578 54299.44140625 0.09658830783615173 9 -0.2522735595703125 4 Unmodified _SPLSSSTAPL_ REV__ENSG00000277258|ENST00000620225|PCGF2 29.081581746732265 0.240155558137004 1 SP{I|L} 3 -1 43.544 0 0 4.5429 0 0 0 658.3065171264222 658.3065171264222 38.05925402426212 0 0 0 0 0.8807196863200843 1.154901959985743 0 0 SP{I|L} 4.5429 + + 19 + NaN NaN 90401.2 NaN 4448 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6583 37.645 NaN 119100 35 0 10897 0.261 + 27886 TEEDLDLVTL 10 39 574.2907481779872 1146.5669434227743 2 574.2911376953125 MULTI HCD FTMS 0 0 0 6578 58375.08203125 0.013213330886748502 78 -2.1351242065429688 5 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 1 VT{I|L} 3 7 35.445 0 0 3.0914 0 0 815.3577332175307 0 815.3577332175307 0 12.25772496747986 0 0 0 0.5 0 0.4247425010840047 0 + VT{I|L} 3.0914 + + 19 NaN NaN 98155.5 NaN 4449 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6584 37.648 NaN 90953 35 0 22144 0.261 -1 RYLEKPMEI 9 32 597.8130841336915 1193.611615334183 2 597.813232421875 MULTI HCD FTMS 0 0 0 6578 33421.078125 0.07019006439394636 67 -1.845672607421875 6 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 K 1 -1 11.99 0 0 1.0045 0 0 504.2265656146814 558.2678316705686 1062.49439728525 0 0 0 0 0 0.5 0 0 0 K 1.0045 + + 2 + NaN NaN 98491.3 NaN 4450 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6585 37.651 NaN 71264 35 0 13877 0.264 -1 CRECGKTFIM 10 38 439.86272976554017 1316.5663598968206 3 439.86297607421875 MULTI HCD FTMS 0 0 0 6578 22094.162109375 0.6430099100803338 -8 0.22226333618164062 7 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))REC(Carbamidomethyl (C))GKTFIM(Oxidation (M))_ ENSG00000186448|ENST00000344387|ZNF197 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90461.1 NaN 4451 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6586 37.655 NaN 62836 35 0 13446 0.261 + 11200 IYKEEREYF 9 24 426.2115461321167 1275.6128089965503 3 426.2118225097656 MULTI HCD FTMS 0 0 0 6578 35031.73828125 0.7287748107471008 3 -0.08634185791015625 8 Unmodified _IYKEEREYF_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 7.101721422024254 0.29718071671418667 1 {M(Oxidation (M))|F} 1 8 20.485 0 0 1.6059 0 0 1110.5339648576814 0 1110.5339648576814 0 20.48455006504028 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6059 + + 2 + NaN NaN 90076.4 NaN 4452 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6587 37.658 NaN 43048 35 0 8790.8 0.261 + -1 ELTCIPVYM 9 33 563.2701795755878 1124.5258062179755 2 564.2557373046875 MULTI HCD FTMS 0 0 0 6578 2839.954833984375 0.24547265015767286 3 -0.08634185791015625 9 Carbamidomethyl (C) _ELTC(Carbamidomethyl (C))IPVYM_ REV__SFRP4|p.A82V|1|0.65|ENSG00000106483|chr7:37916293-37916293|G/A|missense_variant 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90783.6 NaN 4453 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6588 37.661 NaN 35076 35 0 8028.9 0.261 + 23006 RAQAVHHF 8 26 483.2560736368336 NaN 0 483.2561340332031 PEAK HCD FTMS 0 0 0 6578 6358.6103515625 0.24903765510501383 31 -0.8976669311523438 10 Unmodified _RAQAVHHF_ REV__ENST00000334342.5_1_14:58583046-58606076:-|nuORF;REV__nc|ENSG00000139971|Q86TY3-2|ARMH4 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90367.8 NaN 4454 2132 6578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6590 37.667 NaN 564740 35 0 44392 0.327 + 3027 EADRNPPVL 9 76 505.76668013307057 1009.5188073329412 2 505.7667236328125 MULTI HCD FTMS 0 0 0 6589 191095.59375 0.8748625305930681 -2 0.06980133056640625 1 Unmodified _EADRNPPVL_ ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8 55.50274090549119 0.023872834264864425 1 NPPV{I|L} 5 4 29.87 0 0 2.9588 0 0 471.2064686505875 0 471.2064686505875 0 5.46765560293629 0 0 0 1.2614393726401687 0 0 0 + NPPV{I|L} 2.9588 + + 233 NaN NaN 169892.8 NaN 4455 2133 6589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6591 37.671 NaN 301560 35 0 27811 0.261 + 17871 MIHEPEPHI 9 66 551.7710625495918 1101.5275721659834 2 551.7714233398438 MULTI HCD FTMS 0 0 0 6589 113925.953125 1 0 0 2 Unmodified _MIHEPEPHI_ CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENSG00000123975|ENST00000314355|CKS2;ENSG00000173207|ENST00000308987|CKS1B;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF 39.957323273324995 0.06554068735427583 1 {I|L}MHE[EP]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 9 4 + 55.85 0 0 5.0702 5.0702 83.775 0 0 0 14.09256854528806 4.796962438796157 4.796962438796157 4.796962438796157 0 1.4247425010840047 0 1.75 0 {I|L}MHE[EP]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{I|L}MHE[EP]PH{I|L};{I|L}MH[DP][KQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.0702;4.6348;1.4928 -;-;- 209 + NaN NaN 140671.3 NaN 4456 2133 6589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6592 37.675 NaN 68319 35 0 6282.3 0.261 + 19074 NELVSTHGY 9 39 510.244229278083 1018.4739056229661 2 510.2430419921875 MULTI HCD FTMS 0 0 0 6589 20171.580078125 0.33477079210494687 -7 0.2090911865234375 3 Unmodified _NELVSTHGY_ ENSG00000105325|ENST00000441788|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 20.41453444215458 0.18397929046831515 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V 4 5 35.445 0 0 3.4802 0 0 0 560.2128026779067 560.2128026779067 15.740312677277185 0 0 0 0 1.5 0 0.4247425010840047 0 + {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V 3.4802 + + 30 NaN NaN 94124.8 NaN 4457 2133 6589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6593 37.678 NaN 43021 35 0 5964.8 0.261 + 14270 LCSDHSLASG 10 25 495.22010260178604 NaN 0 495.20782470703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LCSDHSLASG_ ENST00000391809.6_1_19:51453353-51456217:-|nuORF;ENST00000594846.1_1_19:51453353-51456194:-|nuORF 1.4819007175156935 0.33891598740166873 1 S 1 9 5.4846 0 0 0.55488 0 0 259.03076809244084 639.3375948541624 898.3683629466032 0 0 0 0 0 0 0 0 0 + S 0.55488 + + 3 + NaN NaN 93373.6 NaN 4458 2133 6589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6594 37.681 NaN 11501 35 0 2642.5 0.261 -1 VDCCMCYRF 9 11 627.2340087890625 NaN 0 627.2340087890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))CMC(Carbamidomethyl (C))YRF_ nc|ENSG00000177119|Q4KMQ2-4|ANO6 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81940.3 NaN 4459 2133 6589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6596 37.687 NaN 343280 35 0 55718 0.327 + 13361 KYMTAVVKL 9 56 534.8096583782747 1067.6047638233492 2 534.809814453125 MULTI HCD FTMS 0 0 0 6595 181794.59375 0.8305441642315153 1 -0.029872894287109375 1 Oxidation (M) _KYM(Oxidation (M))TAVVKL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 71.70789743142352 0.008535567138151097 1 KY{M(Oxidation (M))|F}[TA]VVK{I|L} 9 0 + 38.782 0 0 3.6326 3.6326 88.751 0 0 0 29.102737437457627 2.8778746951401573 2.8778746951401573 38.78198746230489 0 1.916386562212267 0 0 0.6307196863200843 + + KY{M(Oxidation (M))|F}[TA]VVK{I|L} 3.6326 + + 87 + NaN NaN 130058.8 NaN 4460 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6597 37.691 NaN 187100 35 0 40525 0.261 -1 SSGPVDPMM 9 36 476.69134176815527 951.3681306031106 2 476.6911926269531 MULTI HCD FTMS 0 0 0 6595 55839.9921875 0.8189138990658505 -9 0.2555656433105469 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 1 {I|L}D 2 -1 17.206 0 0 1.8086 0 0 296.0534466204918 424.1836348875918 720.2370815080835 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}D 1.8086 - 6 + NaN NaN 110130 NaN 4461 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6598 37.695 NaN 108310 35 0 8264 0.261 + -1 AGTLTKSAPAM 11 55 532.2761721013312 1062.5377912694623 2 532.2764282226562 MULTI HCD FTMS 0 0 0 6595 41379.69140625 0.6990649021238619 2 -0.059711456298828125 3 Oxidation (M) _AGTLTKSAPAM(Oxidation (M))_ REV__ENST00000393203.2_1_1:117484429-117484570:+|nuORF 11.494710602746466 0.35692862141139436 1 EVP{M(Oxidation (M))|F} 4 -1 15.362 0 0 1.4458 0 0 572.327202745828 0 572.327202745828 0 2.174165578762482 0 0 0 0.3935078169319297 0 0 0 EVP{M(Oxidation (M))|F} 1.4458 - 45 + NaN NaN 110186.2 NaN 4462 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6599 37.698 NaN 109200 35 0 24294 0.263 -1 IAKLKMILLC 10 40 406.91523338885463 1217.7238707667639 3 406.91534423828125 MULTI HCD FTMS 0 0 0 6595 41084.1875 0.2087464312326861 31 -0.8975677490234375 4 Carbamidomethyl (C),Oxidation (M) _IAKLKM(Oxidation (M))ILLC(Carbamidomethyl (C))_ ENST00000504490.2_1_4:113277971-113278631:+|nuORF 1.9063754702782614 0.46521295622613185 1 KY 2 -1 25.969 0 0 2.1326 0 0 0 923.544032466277 923.544032466277 21.365006360318688 0 0 0 0 0.5 0 0 0 KY 2.1326 - 7 + NaN NaN 97025.4 NaN 4463 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6600 37.701 NaN 84062 35 0 10406 0.261 + -1 RRIVVYFKM 9 35 409.9057375497935 1226.6953832495806 3 409.9059143066406 MULTI HCD FTMS 0 0 0 6595 19098.599609375 0.1405833989011746 80 -2.198028564453125 5 Oxidation (M) _RRIVVYFKM(Oxidation (M))_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 1.0714618166137932 0.3428945748894048 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7926 0 0 1061.6494370599305 0 1061.6494370599305 0 10.752574989159953 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7926 + + 8 + NaN NaN 93296.4 NaN 4464 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6601 37.705 NaN 54014 35 0 5134 0.261 + 26888 SYISRTNQL 9 30 541.2853828772801 1080.55621282136 2 541.285888671875 MULTI HCD FTMS 0 0 0 6595 21314.443359375 0.022360216720245428 25 -0.7317924499511719 6 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 12.240655878213236 0.2545997876781172 1 {I|L}[MT] 3 7 18.512 0 0 1.7132 0 0 717.376459674175 0 717.376459674175 0 0.553396606206892 0 0 0 0.805462187404089 0 0 0 {I|L}[MT] 1.7132 - 16 NaN NaN 90869.9 NaN 4465 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6602 37.708 NaN 38582 35 0 5976.3 0.261 + -1 PAYKNDIM 8 18 484.2310934646682 NaN 0 484.23077392578125 PEAK HCD FTMS 0 0 0 6595 8824.6005859375 0.5832635644059124 1 -0.029872894287109375 7 Oxidation (M) _PAYKNDIM(Oxidation (M))_ REV__ENSG00000119771|ENST00000486442|KLHL29;REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF 7.910154910731844 0.38822285293237185 1 {I|L} 1 -1 11.237 0 0 1.1627 0 0 165.04378504147888 685.2943209283811 850.33810596986 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.1627 + + 1 + NaN NaN 91353.3 NaN 4466 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6603 37.711 NaN 20304 35 0 4560.2 0.261 + 7481 FVYKRLKER 9 18 619.8719938098769 NaN 0 619.8717041015625 PEAK HCD FTMS 0 0 0 6595 3047.883056640625 0.35580387531511576 2 -0.059711456298828125 8 Unmodified _FVYKRLKER_ REV__ENSG00000213213|ENST00000338005|CCDC183;REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF;REV__ENST00000415992.5_1_9:139693810-139699267:+|nuORF;REV__ENST00000430612.5_1_9:139694306-139700853:+|nuORF;REV__nc|ENSG00000213213|Q5T5S1-2|CCDC183;REV__nc|ENSG00000213213|Q5T5S1-3|CCDC183;REV__nc|ENSG00000213213|Q5T5S1-4|CCDC183 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78444.8 NaN 4467 2134 6595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6605 37.716 NaN 190510 35 0 42431 0.327 -1 PLNYFLGGC 9 36 520.7487808556734 1039.4830087781468 2 522.2754516601562 MULTI HCD FTMS 0 0 0 6604 6155.04296875 0.31069225595572475 4 -0.11286163330078125 1 Carbamidomethyl (C) _PLNYFLGGC(Carbamidomethyl (C))_ ENSG00000174886|ENST00000308961|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF;nc|ENSG00000174886|Q86Y39-2|NDUFA11 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F}TC(Carbamidomethyl (C)) 3 -1 16.655 0 0 1.6023 0 0 613.3472157209 0 613.3472157209 0 5.6863623584101255 0 0 0 0 0 0 0 {M(Oxidation (M))|F}TC(Carbamidomethyl (C)) 1.6023 - 7 NaN NaN 125670 NaN 4468 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6606 37.721 NaN 72934 35 0 6072.2 0.261 + 8952 HPDSHPHLVS 10 32 563.2749425245713 NaN 0 563.2880249023438 PEAK HCD FTMS 0 0 0 6604 3780.10302734375 0.24598052186189276 3 -0.07964324951171875 2 Unmodified _HPDSHPHLVS_ ENST00000245407.7_1_5:131726498-131729479:+|nuORF 6.723162845929126 0.3344301934401713 1 PD 2 8 10.969 0 0 0.97543 0 0 137.03900205271742 772.4005523083655 909.4395543610829 0 0 0 0 0 0 0 0 0 + PD 0.97543 + + 13 + NaN NaN 100834.4 NaN 4469 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6607 37.724 NaN 38589 35 0 3672.5 0.261 -1 TATKIEITM 9 32 512.2729942169169 NaN 0 512.2732543945312 PEAK HCD FTMS 0 0 0 6604 9019.2646484375 0.4787180819693663 1 -0.02983856201171875 3 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 6.2057823575117 0.2651744870083793 1 T 1 -1 8.8515 0 0 0.86565 0 0 756.4387668988745 162.0234316461547 918.4621985450292 0 0 0 0 0 0.4247425010840047 0 0 0 T 0.86565 + + 3 + NaN NaN 90971.3 NaN 4470 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6608 37.728 NaN 73756 35 0 16524 0.261 + 28875 TVVGENGSVLR 11 20 565.8116349168956 1129.6087169005912 2 565.811767578125 MULTI HCD FTMS 0 0 0 6604 33944.33203125 0.5023245755610475 -4 0.11959457397460938 4 Unmodified _TVVGENGSVLR_ ENSG00000149503|ENST00000394818|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF;nc|ENSG00000149503|Q9NQS7-2|INCENP 9.5439744041441 0.373925449867384 1 {[TV]|[{I|L}S]}VW 4 8 38.188 0 0 3.3806 0 0 0 641.3396090143186 641.3396090143186 38.187587626244124 0 0 0 0 0.5 1.6989700043360187 0 0 {[TV]|[{I|L}S]}VW 3.3806 - 10 + NaN NaN 85757.4 NaN 4471 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6609 37.731 NaN 34060 35 0 9280.3 0.261 + 2625 DVAQPDQTRI 10 24 571.7942127025904 1141.5738724719806 2 571.7948608398438 MULTI HCD FTMS 0 0 0 6604 15080.62890625 0.8369325574710277 -2 0.049793243408203125 5 Unmodified _DVAQPDQTRI_ ENSG00000105202|ENST00000221801|FBL 4.5288652416199255 0.4513317009562028 1 Q 1 9 11.99 0 0 1.0503 0 0 728.3840359014713 282.1091402643188 1010.4931761657901 0 0 0 0 0 0.5 0 0 0 + Q 1.0503 + + 3 + NaN NaN 85924.4 NaN 4472 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6610 37.734 NaN 43118 35 0 5281.8 0.261 + 4237 EVFHQSLDS 9 35 531.24863420182 1060.4827154704399 2 531.2485961914062 MULTI HCD FTMS 0 0 0 6604 9798.08984375 0.4859474373906851 3 -0.07964324951171875 6 Unmodified _EVFHQSLDS_ REV__ENSG00000269964|ENST00000684080|MEI4 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 88524.2 NaN 4473 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6611 37.738 NaN 45625 35 0 6962.2 0.261 -1 NADPQAVTM 9 24 481.71612515155437 961.4176973699088 2 481.7157897949219 MULTI HCD FTMS 0 0 0 6604 11861.8330078125 0.00824445623081362 214 -5.930145263671875 7 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 3.5964929083625545 0.32375295897743744 1 {[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[VA]|[{I|L}G]}[{M(Oxidation (M))|F}T] 8 -1 + 0 0 0 0 0 39.275 0 0 0 0 0 0 0 0 0 0 0 0 {[YC]|[HE]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[VA]|[{I|L}G]}[{M(Oxidation (M))|F}T] 0 - 3 + NaN NaN 84293.6 NaN 4474 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6612 37.741 NaN 30042 35 0 7908.8 0.261 + 30437 VLPKTERLRRV 11 24 456.29278785130725 NaN 0 456.29241943359375 PEAK HCD FTMS 0 0 0 6604 6998.60107421875 0.3363515356474827 32 -0.9240341186523438 8 Unmodified _VLPKTERLRRV_ REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82212.4 NaN 4475 2135 6604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6614 37.746 NaN 118510 35 0 24170 0.327 + 21718 QADPREPQF 9 35 544.261922229402 1086.5092915256039 2 544.2620239257812 MULTI HCD FTMS 0 0 0 6613 68639.15625 0.5730079314316706 2 -0.0498046875 1 Unmodified _QADPREPQF_ ENSG00000184014|ENST00000328194|DENND5A;ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A 21.536976647645854 0.1742816388551942 1 [QA]D[RP]E[QP]{M(Oxidation (M))|F} 9 0 + 18.367 0 0 1.6904 1.6904 86.353 0 0 0 0.8703755979488683 9.783314857277631 0.8703755979488683 18.36680871375988 0 0.3807196863200844 0 0 0.28872548999643577 + + [QA]D[RP]E[QP]{M(Oxidation (M))|F} 1.6904 + + 40 + NaN NaN 100495.4 NaN 4476 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6615 37.751 NaN 146310 35 0 26605 0.261 -1 RPVPFASEM 9 53 525.2583763488052 1048.5021997644103 2 525.2474975585938 MULTI HCD FTMS 0 0 0 6613 12591.8115234375 0.5050343571018817 -1 0.02983856201171875 2 Oxidation (M) _RPVPFASEM(Oxidation (M))_ ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 22.736283301280096 0.1639198954644489 1 [YV]H[C(Carbamidomethyl (C))H]V 6 -1 29.627 0 0 2.8256 0 0 0 250.13053163380405 250.13053163380405 9.833333518428802 0 0 0 0 0.7742275032520141 2 0 0 [YV]H[C(Carbamidomethyl (C))H]V 2.8256 - 95 NaN NaN 105447.1 NaN 4477 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6616 37.754 NaN 89236 35 0 11662 0.261 -1 VDCGTEETSL 10 35 555.7345023579659 1109.4544517827317 2 555.7347412109375 MULTI HCD FTMS 0 0 0 6613 20482.03515625 0.11493359130732737 26 -0.7583274841308594 3 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 13.042465956692817 0.38911719078024076 1 TS{I|L} 3 -1 28.672 0 0 2.5843 0 0 790.2806263654312 0 790.2806263654312 0 10.713337517843655 0 0 0 0.5 0 0.5 0 TS{I|L} 2.5843 + + 44 NaN NaN 113939.1 NaN 4478 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6617 37.758 NaN 91696 35 0 14442 0.261 -1 MGNRKEKG 8 31 489.2459804171139 NaN 0 489.2558288574219 PEAK HCD FTMS 0 0 0 6613 4324.90625 0.5598915742822804 18 -0.5145225524902344 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GNRKEKG_ ENST00000574081.5_2_17:5113240-5113291:-|nuORF 4.3292370932331545 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.71581 0 0 131.07494437266774 743.3122956270847 874.3872399997524 0 0 0 0 0 0 0 0 0 V 0.71581 - 2 + NaN NaN 112819.6 NaN 4479 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6618 37.761 NaN 56448 35 0 5563.1 0.261 + 27849 TDISIITDL 9 38 495.77186281686863 989.5291727005373 2 495.77227783203125 MULTI HCD FTMS 0 0 0 6613 13495.5068359375 0.8315467038179221 1 -0.02655792236328125 5 Unmodified _TDISIITDL_ REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1 10.823927491677226 0.26684000660059787 1 {I|L}{[ES]|[DT]|[{I|L}C]}{I|L} 4 -1 20.445 0 0 2.0662 0 0 529.2736073224625 0 529.2736073224625 0 20.445312593723983 0 0 0 0 0 0.4247425010840047 0 {I|L}{[ES]|[DT]|[{I|L}C]}{I|L} 2.0662 + + 9 NaN NaN 90654.3 NaN 4480 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6619 37.764 NaN 52002 35 0 5073.5 0.261 -1 HPVLKEMEVQ 10 32 613.3159539454991 1224.6173549577982 2 613.315673828125 MULTI HCD FTMS 0 0 0 6613 23137.22265625 0.1370764550130103 -10 0.2887229919433594 6 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2622 0 0 891.4393177716812 0 891.4393177716812 0 5.993624753846094 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.2622 - 5 NaN NaN 109639.8 NaN 4481 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6620 37.768 NaN 28486 35 0 2993.2 0.261 + 17979 MKSVVSWHY 9 25 568.7829976672692 NaN 0 568.8004760742188 PEAK HCD FTMS 0 0 0 6613 9588.3427734375 0.9554134493450404 4 -0.10291671752929688 7 Unmodified _MKSVVSWHY_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 6.2057823575117 0.2651744870083793 1 K 1 8 4.6041 0 0 0.40545 0 0 131.05840284218635 873.3763521783811 1004.4347550205675 0 0 0 0 0 0 0 0 0 + K 0.40545 + + 1 + NaN NaN 97977.8 NaN 4482 2136 6613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6622 37.773 NaN 550860 35 0 68652 0.327 + 1534 AYVHMVTHF 9 66 560.7657570063983 1119.5169610795965 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6621 272122.84375 0.27720568723106886 27 -0.7814559936523438 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 102.69 0 0 9.1725 9.1725 89.517 0 0 0 2.755762612236907 2.755762612236907 2.755762612236907 2.755762612236907 0 3.079689690656103 1.6989700043360187 0.6307196863200843 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]A[PA]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]A[PA]H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC]WEVTH{M(Oxidation (M))|F} 9.1725;8.9263;8.1015;5.8667;5.1095;4.9786;4.7958;4.64;3.6945;3.5196 +;+;-;-;-;-;-;-;-;- + 785 + NaN NaN 182132.1 NaN 4483 2137 6621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6623 37.777 NaN 267750 35 0 49677 0.261 + 25987 SPDSGVYEM 9 38 500.7000073297071 999.3854617262142 2 500.7003479003906 MULTI HCD FTMS 0 0 0 6621 120273.3125 0.6597095766447054 8 -0.22903060913085938 2 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 71.13359017698441 0.008721403657255008 1 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 52.826 0 0 5.2859 5.2859 88.607 0 0 0 0.4036245867396815 38.12137499549429 0.4036245867396815 13.266062568876713 0 1.8182503180159344 0 1.2302046884880937 0 [DP]SSGVYE{M(Oxidation (M))|F};[DP]SSGVEY{M(Oxidation (M))|F} 5.2859;3.9585 -;- 146 NaN NaN 139745.7 NaN 4484 2137 6621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6624 37.781 NaN 71009 35 0 7858.9 0.261 + 31631 VYISEHEHF 9 31 580.7719995076426 1159.529446082085 2 580.772216796875 MULTI HCD FTMS 0 0 0 6621 30820.365234375 0.12098663187409904 10 -0.2953529357910156 3 Unmodified _VYISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 11.640296217721598 0.25978676193971967 1 [YV]{I|L} 3 6 34.265 0 0 2.9551 0 0 0 781.2891989883137 781.2891989883137 34.26477176880759 0 0 0 0 0.3807196863200844 2 0 0 + [YV]{I|L} 2.9551 + + 11 + NaN NaN 95911.5 NaN 4485 2137 6621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6625 37.784 NaN 94809 35 0 13906 0.262 + 11613 IYTSGSTVR 9 31 492.2615775454914 982.5086021577828 2 492.2615966796875 MULTI HCD FTMS 0 0 0 6621 17672.44140625 0.6953913203065895 1 -0.02324676513671875 4 Unmodified _IYTSGSTVR_ REV__ENSG00000170820|ENST00000406846|FSHR;REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant;REV__nc|ENSG00000170820|P23945-2|FSHR;REV__nc|ENSG00000170820|P23945-3|FSHR;REV__nc|ENSG00000170820|P23945-4|FSHR 9.38312468134398 0.279288223203164 1 SP[VP]TVR 7 -1 27.211 0 0 2.7695 0 0 228.07068819469526 0 228.07068819469526 0 21.5244949760919 0 0 0 0 0 0 0 SP[VP]TVR 2.7695 - 52 + NaN NaN 96203.4 NaN 4486 2137 6621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6626 37.788 NaN 93062 35 0 14678 0.261 + 20436 PAHMMELTSTD 11 36 616.7682800751417 1231.5220072170832 2 616.7898559570312 MULTI HCD FTMS 0 0 0 6621 10860.99609375 0.5584523457673873 -7 0.21245193481445312 5 Unmodified _PAHMMELTSTD_ REV__ENSG00000262406|ENST00000571244|MMP12 5.731851221503515 0.39378271418728467 1 PTD 3 -1 18.188 0 0 1.4768 0 0 137.0140940285126 778.3565767877561 915.3706708162688 0 0 0 0 0 0 0 0.5 0 PTD 1.4768 - 9 + NaN NaN 111265.7 NaN 4487 2137 6621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6627 37.791 NaN 88109 35 0 9161.6 0.261 + 22800 QYLEQSSKL 9 55 548.287628362728 1094.560703792256 2 548.2880249023438 MULTI HCD FTMS 0 0 0 6621 18610.3984375 0.17243735410227767 -3 0.08626937866210938 6 Unmodified _QYLEQSSKL_ ENSG00000176102|ENST00000323959|CSTF3 14.405379775768559 0.2358970535022398 1 QE{I|L}C(Carbamidomethyl (C)){I|L} 5 6 39.196 0 0 3.581 0 0 433.2535877912125 0 433.2535877912125 0 11.770540992022802 0 0 0 0 0 0.4247425010840047 0 QE{I|L}C(Carbamidomethyl (C)){I|L} 3.581 - 86 NaN NaN 109548.9 NaN 4488 2137 6621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6629 37.796 NaN 123720 35 0 12000 0.327 + 27327 SYQSQINHI 9 35 545.270060143732 1088.525567354264 2 545.2705078125 MULTI HCD FTMS 0 0 0 6628 64213.1640625 0.9358375199195884 -1 0.02324676513671875 1 Unmodified _SYQSQINHI_ DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50 41.95555342248728 0.056367691549927025 1 {[{M(Oxidation (M))|F}C]|[YS]}Q{[QS]|[NT]}{I|L}N[H{I|L}] 9 0 + 40.92 0 0 3.7592 3.7592 84.504 0 0 0 30.462659351691528 4.137342758552691 4.137342758552691 9.208187539523749 0 1.6989700043360187 0 0 0.3807196863200844 + + {[{M(Oxidation (M))|F}C]|[YS]}Q{[QS]|[NT]}{I|L}N[H{I|L}];{[{M(Oxidation (M))|F}C]|[YS]}Q{[QS]|[NT]}{I|L}GG[H{I|L}];{[{M(Oxidation (M))|F}C]|[YS]}[AG]{[QS]|[NT]}{I|L}N[H{I|L}] 3.7592;2.9133;2.9133 +;-;- + 64 + NaN NaN 97422.8 NaN 4489 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6630 37.801 NaN 109400 35 0 9437 0.261 + 27887 TEEDLDLVTL 10 35 574.2907481779872 1146.5669434227743 2 574.2908935546875 MULTI HCD FTMS 0 0 0 6628 51061.13671875 0.01155780294333747 84 -2.3136978149414062 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 1 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3562377142017 0 815.3562377142017 0 13.494850021680094 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 10 NaN NaN 91350.4 NaN 4490 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6631 37.804 NaN 83326 35 0 22782 0.261 -1 RYLEKPMEI 9 27 597.8130841336915 1193.611615334183 2 597.8129272460938 MULTI HCD FTMS 0 0 0 6628 25943.111328125 0.05448503629624943 73 -1.9956817626953125 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 K 1 -1 11.99 0 0 1.0045 0 0 504.2229196744125 558.2680758111936 1062.4909954856062 0 0 0 0 0 0.5 0 0 0 K 1.0045 + + 1 + NaN NaN 108252.6 NaN 4491 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6632 37.807 NaN 87240 35 0 6970 0.264 -1 EMEEKYYRF 9 47 437.52879075441194 1309.564542863436 3 437.52911376953125 MULTI HCD FTMS 0 0 0 6628 26888.955078125 0.6911410972255146 -1 0.02324676513671875 4 Oxidation (M) _EM(Oxidation (M))EEKYYRF_ ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 5.783430956126388 0.3071743400961265 1 YKEEEE 6 -1 28.416 0 0 2.1699 0 0 484.24278456855626 0 484.24278456855626 0 20 0 0 0 0 0 0 0 YKEEEE 2.1699 - 29 NaN NaN 113036 NaN 4492 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6633 37.811 NaN 116520 35 0 12717 0.261 + 4314 EVSPPVTVR 9 36 492.27957651086103 982.5446000885221 2 492.27960205078125 MULTI HCD FTMS 0 0 0 6628 22410.890625 0.14122459099134296 -11 0.31201171875 5 Unmodified _EVSPPVTVR_ ENSG00000159339|ENST00000375448|PADI4 15.248480904072842 0.22861284681709862 1 {NN|[MP]|[D{I|L}]|[EV]}SP[VP]TVR 9 0 + 55.864 0 0 5.6856 5.6856 89.94 0 0 0 24.13734275855269 16.26410021363376 16.26410021363376 16.26410021363376 0 0 1.6989700043360187 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}SP[VP]TVR;{NN|[MP]|[D{I|L}]|[EV]}SP[VP]R{[TV]|[{I|L}S]} 5.6856;4.0303 +;- + 86 + NaN NaN 96134 NaN 4493 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6634 37.814 NaN 65153 35 0 7829.6 0.261 + 3713 ELYAEMESLQF 11 28 453.87613700230645 1358.6065816071193 3 453.8763427734375 MULTI HCD FTMS 0 0 0 6628 17196.59765625 0.8940165882311369 10 -0.2920684814453125 6 Unmodified _ELYAEMESLQF_ REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF;REV__ENST00000565421.1_1_16:53404024-53404910:-|nuORF;REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF 2.4347853303010236 0.4082425251555256 1 Q{M(Oxidation (M))|F} 2 -1 23.271 0 0 1.7129 0 0 1065.4722057441759 0 1065.4722057441759 0 16.308422131034845 0 0 0 0.3807196863200844 0 0 0 Q{M(Oxidation (M))|F} 1.7129 + + 4 NaN NaN 84153.6 NaN 4494 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6635 37.817 NaN 53031 35 0 6326 0.261 + -1 NAPDAEVTM 9 27 482.2078915201991 962.4012301071982 2 482.2080078125 MULTI HCD FTMS 0 0 0 6628 16491.375 0.5780580427896304 -3 0.07964324951171875 7 Oxidation (M) _NAPDAEVTM(Oxidation (M))_ REV__ENSG00000131126|ENST00000598265|TEX101;REV__nc|ENSG00000131126|Q9BY14-2|TEX101 4.3292370932331545 0.3181982124262546 1 V[KC]VT{M(Oxidation (M))|F} 6 -1 22.396 0 0 2.3271 0 0 267.07624981740975 0 267.07624981740975 0 1.4266750356873104 0 0 0 0 0 0 0 V[KC]VT{M(Oxidation (M))|F} 2.3271 - 18 + NaN NaN 95163.5 NaN 4495 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6636 37.821 NaN 50638 35 0 11097 0.261 -1 0 32 527.1554602371865 1052.296367541173 2 527.15576171875 MULTI HCD FTMS 0 0 0 6628 12460.9423828125 0.47611813277287734 6 -0.1825714111328125 8 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.1854 0 0 887.2500398817964 0 887.2500398817964 0 5.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1854 - 4 + NaN NaN 88963.6 NaN 4496 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6637 37.824 NaN 27220 35 0 4901.5 0.261 + 586 APERTILHTT 10 25 569.8142695988378 1137.6139862644754 2 569.8143920898438 MULTI HCD FTMS 0 0 0 6628 5228.12158203125 0.3324730963098853 -1 0.02324676513671875 9 Unmodified _APERTILHTT_ REV__ENST00000305963.2_1_X:135044472-135044568:-|nuORF 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89757.2 NaN 4497 2138 6628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6639 37.829 NaN 282180 35 0 17593 0.327 + 3028 EADRNPPVL 9 56 505.76668013307057 1009.5188073329412 2 505.76678466796875 MULTI HCD FTMS 0 0 0 6638 67170.2109375 0.30751468188288056 4 -0.11614990234375 1 Unmodified _EADRNPPVL_ ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8 34.40172386719151 0.0910440009062557 1 RMSASN{I|L} 7 8 28.554 0 0 2.8284 0 0 232.1434803693375 0 232.1434803693375 0 12.355633102724465 0 0 0 0 0 0.9247425010840047 0 RMSASN{I|L} 2.8284 - 72 NaN NaN 128303.8 NaN 4498 2139 6638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6640 37.834 NaN 186930 35 0 9044.5 0.261 + 17872 MIHEPEPHI 9 54 551.7710625495918 1101.5275721659834 2 551.7711791992188 MULTI HCD FTMS 0 0 0 6638 47620.83203125 0.41799810074005034 6 -0.17256546020507812 2 Unmodified _MIHEPEPHI_ CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENSG00000123975|ENST00000314355|CKS2;ENSG00000173207|ENST00000308987|CKS1B;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF 15.847184025352803 0.2234401846867398 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}ENKM{[TV]|[{I|L}S]} 9 6 + 35.13 0 0 3.1892 3.1892 84.696 0 0 0 10.202264589233401 27.0576784326476 10.202264589233401 9.208187539523756 0 0.5 0 0.3054621874040891 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}ENKM{[TV]|[{I|L}S]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}EGGKM{[TV]|[{I|L}S]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))R]EY{[TV]|[{I|L}S]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[Y{I|L}]M{[CP]|[EA]} 3.1892;2.3532;0.32445;0.058637 -;-;-;- 217 NaN NaN 112304 NaN 4499 2139 6638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6641 37.837 NaN 25649 35 0 6243.2 0.261 + 14653 LGHYGHFH 8 16 484.2310934646682 NaN 0 484.2319030761719 PEAK HCD FTMS 0 0 0 6638 2342.525146484375 0.15482962127784575 6 -0.17256546020507812 3 Unmodified _LGHYGHFH_ chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|23 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87281.4 NaN 4500 2139 6638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6642 37.841 NaN 12289 35 0 6123.2 0.261 + -1 LPWWLSCCH 9 9 601.2693984520554 NaN 0 601.2699584960938 PEAK HCD FTMS 0 0 0 6638 7745.1611328125 0.5602196308434227 6 -0.17256546020507812 4 Carbamidomethyl (C) _LPWWLSC(Carbamidomethyl (C))CH_ REV__ENST00000534032.5_1_11:65652243-65653031:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80843.3 NaN 4501 2139 6638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6643 37.844 NaN 18474 35 0 3941.5 0.261 -1 KQRKEYMH 8 19 568.2899169921875 NaN 0 568.2899169921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _KQRKEYM(Oxidation (M))H_ ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87029.6 NaN 4502 2139 6638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6645 37.849 NaN 227430 35 0 16688 0.327 + 15319 LPAREATQF 9 55 516.7771090069397 1031.5396650806792 2 516.7770385742188 MULTI HCD FTMS 0 0 0 6644 104120.6015625 0.9892183412450144 -1 0.019893646240234375 1 Unmodified _LPAREATQF_ ENSG00000183087|ENST00000327773|GAS6;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.E209Gfs*15|1|0.46|ENSG00000183087|chr13:113835600-113835601|CC/-|frameshift_variant;nc|ENSG00000183087|Q14393-1|GAS6 47.594388314883695 0.03493607795751234 1 {I|L}TQ{M(Oxidation (M))|F} 4 5 48.092 0 0 4.6621 0 0 524.264940330275 0 524.264940330275 0 28.627815773883327 0 0 0 1.1989700043360187 0 0.805462187404089 0 {I|L}TQ{M(Oxidation (M))|F} 4.6621 - 75 NaN NaN 130897 NaN 4503 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6646 37.854 NaN 238560 35 0 19539 0.261 + 9012 HPEKLATVL 9 65 504.2977957027317 1006.5810384722635 2 504.2978515625 MULTI HCD FTMS 0 0 0 6644 86710.1015625 0.0392308178785726 48 -1.3300666809082031 2 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 17.11289562659939 0.2125047172822487 1 HP 2 7 23.271 0 0 2.3119 0 0 0 769.4462102980735 769.4462102980735 15.580371765640422 0 0 0 0 0.3807196863200844 0 0 0 + HP 2.3119 + + 34 + NaN NaN 120717.5 NaN 4504 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6647 37.857 NaN 153170 35 0 37235 0.261 + 31189 VVHPGSEEP 9 44 475.7325875470952 949.4506221609904 2 475.7323913574219 MULTI HCD FTMS 0 0 0 6644 81957.40625 1 0 0 3 Unmodified _VVHPGSEEP_ REV__ENSG00000142303|ENST00000597188|ADAMTS10;REV__nc|ENSG00000142303|Q9H324|ADAMTS10 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122465.5 NaN 4505 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6648 37.861 NaN 184190 35 0 14802 0.261 + 30988 VSDIMQQAQ 9 38 510.244229278083 1018.4739056229661 2 510.244873046875 MULTI HCD FTMS 0 0 0 6644 60254.8984375 1 0 0 4 Unmodified _VSDIMQQAQ_ ENSG00000108599|ENST00000225737|AKAP10 10.073929032068715 0.27331982688540024 1 [VS]D 3 6 36.254 0 0 3.5597 0 0 0 714.324816418341 714.324816418341 25.285371682087217 0 0 0 0 0.8807196863200843 2 0 0 + [VS]D 3.5597 + + 23 + NaN NaN 118578.5 NaN 4506 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6649 37.864 NaN 105560 35 0 13778 0.261 + 1942 DAGREYSL 8 32 455.7166557201502 909.4187585071004 2 455.7166442871094 MULTI HCD FTMS 0 0 0 6644 61481.65625 0.25038185717103717 -4 0.10291671752929688 5 Unmodified _DAGREYSL_ ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 39.94969957227396 0.23157582791120707 1 {[DA]|[EG]}{[NV]|[RG]}EYS{I|L} 8 0 + 60.921 0 0 6.6989 6.6989 94.368 0 0 0 19.30909368620867 60.92145952513228 19.30909368620867 60.92145952513228 0 1.25 2 0.3807196863200844 0 + + {[DA]|[EG]}{[NV]|[RG]}EYS{I|L} 6.6989 + + 29 NaN NaN 94573.2 NaN 4507 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6650 37.867 NaN 62878 35 0 8164.1 0.261 + 26006 SPEEGAVRL 9 39 479.2534571407969 956.4923613483938 2 479.25335693359375 MULTI HCD FTMS 0 0 0 6644 40567.89453125 0.7268338180813942 6 -0.1858367919921875 6 Unmodified _SPEEGAVRL_ ENSG00000126464|ENST00000418929|PRR12 22.65808497894818 0.16459551161911185 1 SPEEG 5 4 36.938 0 0 3.8618 0 0 0 454.2778414361938 454.2778414361938 18.750612633917 0 0 0 0 0.8494850021680094 0 0 0 + SPEEG 3.8618 + + 29 + NaN NaN 102799.6 NaN 4508 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6651 37.87 NaN 49017 35 0 5377.6 0.261 -1 MPDVDLHM 8 31 495.20688004014875 988.3992071470975 2 495.20703125 MULTI HCD FTMS 0 0 0 6644 15470.5908203125 0.6510932379518518 -9 0.252349853515625 7 2 Oxidation (M) _M(Oxidation (M))PDVDLHM(Oxidation (M))_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 2.577480529830294 0.5381683276125971 1 AV 2 -1 7.0783 0 0 0.71614 0 0 387.07683273479125 428.19294153385005 815.2697742686413 0 0 0 0 0 0 0 0 0 AV 0.71614 - 26 + NaN NaN 95762.5 NaN 4509 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6652 37.874 NaN 63367 35 0 7169.1 0.261 + -1 FEECCFCI 8 26 554.2021363005462 NaN 0 554.2029418945312 PEAK HCD FTMS 0 0 0 6644 7720.78662109375 0.4536262279648537 11 -0.3219261169433594 8 2 Carbamidomethyl (C) _FEECC(Carbamidomethyl (C))FC(Carbamidomethyl (C))I_ REV__ENSG00000135063|ENST00000303068|ENTREP1;REV__nc|ENSG00000135063|Q15884|ENTREP1 2.577480529830294 0.38822285293237185 1 TE{I|L} 3 -1 13.812 0 0 1.2484 0 0 131.9436084280897 628.2504976861936 760.1941061142834 0 0 0 0 0 0 0 0 0 TE{I|L} 1.2484 - 11 + NaN NaN 89956 NaN 4510 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6653 37.877 NaN 35245 35 0 8540.5 0.261 + 30700 VPFFCLPF 8 27 485.2493404308129 NaN 0 485.2501525878906 PEAK HCD FTMS 0 0 0 6644 3069.7265625 0.11076627470332123 -7 0.18254852294921875 9 Unmodified _VPFFCLPF_ REV__ENST00000504260.5_1_17:47779261-47782716:-|nuORF;REV__ENST00000513508.1_1_17:47781399-47782716:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87356.6 NaN 4511 2140 6644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6655 37.882 NaN 232290 35 0 29612 0.327 -1 0 50 522.2753786736802 1042.5362044141602 2 522.2754516601562 MULTI HCD FTMS 0 0 0 6654 76111.5546875 0.699384183372104 12 -0.33855438232421875 1 NaN NaN 1 {I|L}PG 3 -1 44.922 0 0 4.3089 0 0 0 772.3723238580686 772.3723238580686 26.733937431123277 0 0 0 0 0.5 1.5228787452803376 0 0 {I|L}PG 4.3089 - 26 + NaN NaN 116965.9 NaN 4512 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6656 37.887 NaN 153440 35 0 14112 0.261 + 9166 HPIRVVNAL 9 51 509.8112649911413 1017.6079770490826 2 509.8111572265625 MULTI HCD FTMS 0 0 0 6654 79772.046875 1 0 0 2 Unmodified _HPIRVVNAL_ ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF 14.838274106304384 0.23215694253501695 1 HP{I|L} 3 6 26.682 0 0 2.6221 0 0 0 667.3905733697874 667.3905733697874 2.2589502353138613 0 0 0 0 0.5 0 0 0 + HP{I|L} 2.6221 + + 30 + NaN NaN 113154.9 NaN 4513 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6657 37.89 NaN 313240 35 0 35254 0.261 + 17873 MIHEPEPHI 9 73 551.7710625495918 1101.5275721659834 2 551.7545166015625 MULTI HCD FTMS 0 0 0 6654 25958.755859375 0.22785638519866455 8 -0.23565292358398438 3 Unmodified _MIHEPEPHI_ CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENSG00000123975|ENST00000314355|CKS2;ENSG00000173207|ENST00000308987|CKS1B;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF 20.453626601364224 0.18364154288633264 1 MSMQVE 6 7 48.836 0 0 4.4335 0 0 0 393.18821130924067 393.18821130924067 22.853261876534596 0 0 0 0 0 1.2218487496163564 0 0.3252574989159953 MSMQVE 4.4335 - 322 + NaN NaN 129170.8 NaN 4514 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6658 37.894 NaN 44891 35 0 9418.9 0.262 -1 PRCSRCHCWI 10 25 439.86272976554017 1316.5663598968206 3 439.86309814453125 MULTI HCD FTMS 0 0 0 6654 13657.7998046875 0.39748511759949867 1 -0.03322601318359375 4 Carbamidomethyl (C) _PRC(Carbamidomethyl (C))SRCHCWI_ chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1 0.5059551277355931 0.472625603730984 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102547.3 NaN 4515 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6659 37.897 NaN 77554 35 0 10370 0.261 + 864 AWVTSTYIQS 10 32 578.2875389948524 1154.5605250565047 2 578.791015625 MULTI HCD FTMS 0 0 0 6654 15428.01953125 0.2560949072323963 11 -0.315277099609375 5 Unmodified _AWVTSTYIQS_ ENST00000454715.5_1_3:196065156-196065342:-|nuORF 2.9952420565917617 0.4594494122822477 1 C{I|L} 2 9 10.969 0 0 0.95007 0 0 130.0900319101284 805.3490084283811 935.4390403385096 0 0 0 0 0 0 0 0 0 C{I|L} 0.95007 - 6 + NaN NaN 91833.9 NaN 4516 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6660 37.9 NaN 83531 35 0 17334 0.264 -1 0 44 406.91523338885463 1217.7238707667639 3 406.9154968261719 MULTI HCD FTMS 0 0 0 6654 13529.0986328125 0.06874058437676593 38 -1.0558395385742188 6 NaN NaN 1 KY 2 -1 20.969 0 0 1.722 0 0 0 923.5440956076682 923.5440956076682 18.494850021680094 0 0 0 0 0 0 0 0 KY 1.722 - 7 + NaN NaN 97798.4 NaN 4517 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6661 37.904 NaN 118530 35 0 11303 0.261 -1 AVSLEERFKM 10 53 409.21283914633733 1224.616688039212 3 409.213134765625 MULTI HCD FTMS 0 0 0 6654 18691.626953125 0.293616869179122 -5 0.1360931396484375 7 Oxidation (M) _AVSLEERFKM(Oxidation (M))_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 5.783430956126388 0.4446910851847804 1 E{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.4315 0 0 930.5276102219657 0 930.5276102219657 0 8.807196863200843 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F} 2.4315 - 9 NaN NaN 115488 NaN 4518 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6662 37.907 NaN 80080 35 0 5703.8 0.261 + 19710 NYAGTASGPNI 11 38 532.7539840391079 1063.4934151450157 2 532.753662109375 MULTI HCD FTMS 0 0 0 6654 17453.56640625 0.6411409207314159 -4 0.10953521728515625 8 Unmodified _NYAGTASGPNI_ REV__ENSG00000111237|ENST00000549578|VPS29;REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF;REV__nc|ENSG00000111237|Q9UBQ0-2|VPS29 10.799506525563784 0.36298595732910816 1 [YN]D 3 -1 20.546 0 0 1.932 0 0 0 668.3384828542531 668.3384828542531 7.983324797206279 0 0 0 0 0 1.3979400086720375 0 0 [YN]D 1.932 - 36 NaN NaN 86210.5 NaN 4519 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6663 37.91 NaN 62125 35 0 7642.7 0.261 + 7977 GENSAVLHY 9 43 495.23765680981205 988.4607606864241 2 495.2378845214844 MULTI HCD FTMS 0 0 0 6654 15044.4443359375 0.8535739543414861 -1 0.033176422119140625 9 Unmodified _GENSAVLHY_ ENSG00000124299|ENST00000244137|PEPD;nc|ENSG00000124299|P12955-2|PEPD;nc|ENSG00000124299|P12955-3|PEPD 20.453626601364224 0.18364154288633264 1 {[DA]|[EG]}N{[SA]|[TG]}V{I|L}HY 9 0 + 21.805 0 0 2.2059 2.2059 84.236 0 0 0 9.946049681132939 0.8357528085625496 0.8357528085625496 9.208187539523754 0 0.28872548999643577 0 0 0 + + {[DA]|[EG]}N{[SA]|[TG]}V{I|L}HY;{[DA]|[EG]}GG{[SA]|[TG]}V{I|L}HY 2.2059;1.2744 +;- + 32 + NaN NaN 97901.1 NaN 4520 2141 6654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6665 37.916 NaN 479250 35 0 53827 0.327 + 1535 AYVHMVTHF 9 60 560.7657570063983 1119.5169610795965 2 560.7657470703125 MULTI HCD FTMS 0 0 0 6664 232815.625 0.23716426903706359 32 -0.9002189636230469 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 102.83 0 0 9.185 9.185 88.4 0 0 0 0.3380967331202811 0.3380967331202811 0.3380967331202811 0.3380967331202811 0 2.973197507588033 2 0.3252574989159953 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F};A[KC]TV{[YC]|[HE]}W{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F} 9.185;9.1548;8.0024;5.0702;4.7962;3.928;3.4928;2.7824;2.7607;2.5807 +;+;-;-;-;-;-;-;-;- + 707 + NaN NaN 155871.4 NaN 4521 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6666 37.92 NaN 165680 35 0 22219 0.261 -1 RQEYLKLEM 9 43 613.3159539454991 1224.6173549577982 2 613.3161010742188 MULTI HCD FTMS 0 0 0 6664 100146.15625 0.5933158134786243 -4 0.11951446533203125 2 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 10.823927491677226 0.26684000660059787 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4147245921681 888.4147245921681 8.46279041616178 0 0 0 0 0.5 0 0 0 HPV 2.5476 - 48 + NaN NaN 119237.3 NaN 4522 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6667 37.924 NaN 69467 35 0 14318 0.261 + 28876 TVVGENGSVLR 11 24 565.8116349168956 1129.6087169005912 2 565.8118896484375 MULTI HCD FTMS 0 0 0 6664 25216.947265625 0.37317253202946377 3 -0.08626937866210938 3 Unmodified _TVVGENGSVLR_ ENSG00000149503|ENST00000394818|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF;nc|ENSG00000149503|Q9NQS7-2|INCENP 11.517880264261096 0.3567267433909682 1 {[TV]|[{I|L}S]}VGEN 6 5 45.138 0 0 3.9959 0 0 0 527.2929171197874 527.2929171197874 45.13805019828801 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 + {[TV]|[{I|L}S]}VGEN 3.9959 + + 23 + NaN NaN 91965.5 NaN 4523 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6668 37.927 NaN 49668 35 0 11537 0.261 + 30547 VNATEWPPF 9 29 530.7590294912374 NaN 0 530.771240234375 PEAK HCD FTMS 0 0 0 6664 3411.429443359375 0.4794756820387735 3 -0.08626937866210938 4 Unmodified _VNATEWPPF_ ENSG00000092201|ENST00000216297|SUPT16H 4.75600775471527 0.27219989241163056 1 P 1 8 3.4949 0 0 0.32986 0 0 529.7806189416559 429.6536043756469 959.4342233173029 0 0 0 0 0 0 0 0 0 + P 0.32986 + + 1 + NaN NaN 90242.3 NaN 4524 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6669 37.93 NaN 23367 35 0 4916.3 0.261 + 33449 YGSWEMIKMDP 11 20 452.8700422802619 NaN 0 452.87042236328125 PEAK HCD FTMS 0 0 0 6664 10991.533203125 0.5659490579323769 8 -0.2289886474609375 5 Unmodified _YGSWEMIKMDP_ ENSG00000153922|ENST00000614616|CHD1;ENST00000508756.2_1_5:98204705-98207835:-|nuORF;nc|ENSG00000153922|O14646-2|CHD1 0.4545168274142398 0.3408308101233591 1 H 1 11 3.9794 0 0 0.44033 0 0 369.4222612189238 394.2098787897094 763.6321400086332 0 0 0 0 0 0 0 0 0 H 0.44033 - 2 + NaN NaN 81021.9 NaN 4525 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6670 37.934 NaN 47650 35 0 5015.8 0.261 + 4380 EWTYQEDN 8 30 542.7126239778706 NaN 0 542.7125854492188 PEAK HCD FTMS 0 0 0 6664 7904.98486328125 0.46294378599240527 -1 0.03322601318359375 6 Unmodified _EWTYQEDN_ REV__ENST00000436135.1_1_1:158493653-158493989:+|nuORF 2.0597508629832335 0.38822285293237185 1 D 1 -1 6.9897 0 0 0.64516 0 0 200.07525908679742 765.2787333544371 965.3539924412346 0 0 0 0 0 0 0 0 0 D 0.64516 + + 4 + NaN NaN 81578 NaN 4526 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6671 37.937 NaN 29967 35 0 5340 0.261 -1 PYMICLIHI 9 21 588.3012996741105 1174.588046415021 2 588.301513671875 MULTI HCD FTMS 0 0 0 6664 12456.59765625 0.2885193268082327 10 -0.28205108642578125 7 Carbamidomethyl (C),Oxidation (M) _PYM(Oxidation (M))IC(Carbamidomethyl (C))LIHI_ ENSG00000167904|ENST00000434581|TMEM68;nc|ENSG00000167904|Q96MH6-2|TMEM68;nc|ENSG00000167904|Q96MH6-3|TMEM68 0.6014990680409731 0.3464572424761564 1 E 1 -1 6.9897 0 0 0.59508 0 0 252.20628479568342 790.3205660455686 1042.526850841252 0 0 0 0 0 0 0 0 0 E 0.59508 - 1 + NaN NaN 81720 NaN 4527 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6672 37.94 NaN 63411 35 0 9050.8 0.261 -1 CDEEMDLAI 9 33 527.7069146059354 1053.3992762786706 2 527.7073974609375 MULTI HCD FTMS 0 0 0 6664 16892.248046875 0.7448419184450628 -4 0.11951446533203125 8 Oxidation (M) _CDEEM(Oxidation (M))DLAI_ ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1 1.844237919475145 0.33703635659052655 1 A{I|L} 2 -1 19.464 0 0 1.8477 0 0 851.2604237287125 0 851.2604237287125 0 13.979400086720375 0 0 0 0 0 0 0 A{I|L} 1.8477 + + 3 NaN NaN 93069 NaN 4528 2142 6664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6674 37.945 NaN 646090 35 0 184350 0.327 + 9123 HPHAVNEIAL 10 66 550.795964060612 1099.577375188024 2 550.7962036132812 MULTI HCD FTMS 0 0 0 6673 266506.03125 0.703596536119517 -2 0.063079833984375 1 Unmodified _HPHAVNEIAL_ ENSG00000157827|ENST00000288670|FMNL2;ENSG00000161791|ENST00000335154|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 33.4449034751529 0.20229115034201947 1 E{I|L}A{I|L} 4 6 39.042 0 0 3.5507 0 0 655.3174915998062 0 655.3174915998062 0 13.458931237911003 0 0 0 0.6861818737241735 0 0.3252574989159953 0 + E{I|L}A{I|L} 3.5507 + + 283 NaN NaN 203079.1 NaN 4529 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6675 37.95 NaN 205450 35 0 22321 0.261 + 28751 TTAVSNLVSR 10 46 524.2930048313592 1046.5714567295183 2 524.2931518554688 MULTI HCD FTMS 0 0 0 6673 57110.38671875 0.6474246638211779 1 -0.033203125 2 Unmodified _TTAVSNLVSR_ ENST00000343677.3_1_6:26056391-26056457:-|nuORF 57.107585691075435 0.05194081441006845 1 {[DS]|[MA]|[CV]|TT}AVSN{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 45.935 0 0 4.3891 4.3891 84.108 0 0 0 28.945247061488857 5.764837301042718 5.764837301042718 8.439491060230253 0 1.6549471895720984 0 0 0 + + {[DS]|[MA]|[CV]|TT}AVSN{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}AV[KS][TP]{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}AVSGG{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}AV[KS]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PS];{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GG{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 4.3891;3.5827;3.5134;2.4072;1.4913;0.61149 +;-;-;-;-;- + 175 + NaN NaN 133554.1 NaN 4530 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6676 37.953 NaN 88026 35 0 5510 0.261 + 22801 QYLEQSSKL 9 51 548.287628362728 1094.560703792256 2 548.2876586914062 MULTI HCD FTMS 0 0 0 6673 47645.1953125 0.4414634884344476 3 -0.08958053588867188 3 Unmodified _QYLEQSSKL_ ENSG00000176102|ENST00000323959|CSTF3 19.361941925380144 0.1930734562688509 1 QE{I|L}C(Carbamidomethyl (C)){I|L} 5 6 39.993 0 0 3.6538 0 0 433.25352675605626 0 433.25352675605626 0 6.359921914233908 0 0 0 0 0 0.3807196863200844 0.4247425010840047 QE{I|L}C(Carbamidomethyl (C)){I|L} 3.6538 - 146 NaN NaN 86552.6 NaN 4531 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6677 37.957 NaN 195360 35 0 31364 0.261 + 25988 SPDSGVYEM 9 52 500.7000073297071 999.3854617262142 2 500.7000732421875 MULTI HCD FTMS 0 0 0 6673 72706 0.39879873167648855 14 -0.404998779296875 4 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 64.23631603340823 0.01165516075559909 1 YE{M(Oxidation (M))|F} 3 6 49.693 0 0 4.9723 0 0 542.2338565348879 0 542.2338565348879 0 42.70303756120384 0 0 0 1.5 0 0.8494850021680094 0 + YE{M(Oxidation (M))|F} 4.9723 + + 33 + NaN NaN 114458.9 NaN 4532 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6678 37.96 NaN 84187 35 0 8377.7 0.261 + 27888 TEEDLDLVTL 10 23 574.2907481779872 1146.5669434227743 2 574.2908325195312 MULTI HCD FTMS 0 0 0 6673 44446.6640625 0.010060602206187428 89 -2.4492950439453125 5 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 1 VT{I|L} 3 7 31.682 0 0 2.7632 0 0 815.3536854474625 0 815.3536854474625 0 8.494850021680094 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.7632 + + 14 NaN NaN 98489.4 NaN 4533 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6679 37.963 NaN 46788 35 0 7158 0.261 + 20437 PAHMMELTSTD 11 24 616.7682800751417 1231.5220072170832 2 616.7896728515625 MULTI HCD FTMS 0 0 0 6673 13579.837890625 0.6982501659792 -1 0.02985382080078125 6 Unmodified _PAHMMELTSTD_ REV__ENSG00000262406|ENST00000571244|MMP12 5.731851221503515 0.39378271418728467 1 T{[ES]|[DT]|[{I|L}C]} 3 -1 12.447 0 0 1.0107 0 0 896.4061146466812 0 896.4061146466812 0 8.952424927286843 0 0 0 0 0 0.5 0 T{[ES]|[DT]|[{I|L}C]} 1.0107 - 11 NaN NaN 93028.2 NaN 4534 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6680 37.967 NaN 86470 35 0 22899 0.261 + 30854 VQNYVLTLMN 10 32 597.8130841336915 1193.611615334183 2 597.8132934570312 MULTI HCD FTMS 0 0 0 6673 30605.43359375 0.064276722214507 78 -2.141132354736328 7 Unmodified _VQNYVLTLMN_ ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 3.2813086475875832 0.45793521633868084 1 K 1 10 11.237 0 0 0.94144 0 0 504.22484883203293 558.2710665338499 1062.4959153658829 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.94144 - 4 + NaN NaN 104471.8 NaN 4535 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6681 37.97 NaN 37679 35 0 5292.4 0.261 + 27328 SYQSQINHI 9 29 545.270060143732 1088.525567354264 2 545.2703247070312 MULTI HCD FTMS 0 0 0 6673 17486.67578125 0.2548494149709683 4 -0.12273788452148438 8 Unmodified _SYQSQINHI_ DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50 13.042465956692817 0.2476723265019929 1 Q[MT] 3 8 10.458 0 0 0.96071 0 0 710.37211806465 0 710.37211806465 0 10.45757490560675 0 0 0 0 0 0 0 Q[MT] 0.96071 - 2 NaN NaN 109462.7 NaN 4536 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6682 37.973 NaN 69065 35 0 9290.6 0.261 + -1 DSTDALCELS 10 39 555.7345023579659 1109.4544517827317 2 555.7344360351562 MULTI HCD FTMS 0 0 0 6673 20886.693359375 0.11720430416287748 33 -0.9166717529296875 9 Carbamidomethyl (C) _DSTDALC(Carbamidomethyl (C))ELS_ REV__ENSG00000164938|ENST00000342697|TP53INP1;REV__nc|ENSG00000164938|Q96A56-2|TP53INP1 6.2057823575117 0.44245551207394906 1 T{[TV]|[{I|L}S]} 3 -1 11.695 0 0 1.0541 0 0 790.2767201154312 0 790.2767201154312 0 6.210149894766703 0 0 0 0.4247425010840047 0 0 0 T{[TV]|[{I|L}S]} 1.0541 - 7 NaN NaN 102170.2 NaN 4537 2143 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6684 37.979 NaN 341920 35 0 44819 0.327 + 4315 EVSPPVTVR 9 51 492.27957651086103 982.5446000885221 2 492.2796936035156 MULTI HCD FTMS 0 0 0 6683 143394.578125 0.9036160581449136 -5 0.14935302734375 1 Unmodified _EVSPPVTVR_ ENSG00000159339|ENST00000375448|PADI4 40.23920728925047 0.06424668180817725 1 {NN|[MP]|[D{I|L}]|[EV]}SPPVTVR 9 0 + 72.814 0 0 7.4108 7.4108 93.531 0 0 0 53.60129291031335 16.478174818886373 16.478174818886373 19.714628317912783 0 0.7742275032520141 1.5228787452803376 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}SPPVTVR;{NN|[MP]|[D{I|L}]|[EV]}SPPVR{[TV]|[{I|L}S]};{NN|[MP]|[D{I|L}]|[EV]}SP[RV]P{[TV]|[{I|L}S]};[{I|L}P]{[DS]|[MA]|[CV]|TT}PVTVR;[{I|L}P]{[DS]|[MA]|[CV]|TT}PVR{[TV]|[{I|L}S]} 7.4108;5.4043;3.9815;2.9853;0.97877 +;-;-;-;- + 204 + NaN NaN 151245.1 NaN 4538 2144 6683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6685 37.983 NaN 184130 35 0 33796 0.261 -1 SSGPVDPMM 9 31 476.69134176815527 951.3681306031106 2 476.69110107421875 MULTI HCD FTMS 0 0 0 6683 45801.55859375 0.6716966006255466 1 -0.023212432861328125 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 1 D 1 -1 14.732 0 0 1.5485 0 0 427.2076233201058 406.11099887887184 833.3186221989777 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 5 + NaN NaN 129298.6 NaN 4539 2144 6683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6686 37.987 NaN 125850 35 0 9712.2 0.261 + 19596 NTIRADPAL 9 35 485.7693981192467 969.5242433052935 2 485.7691955566406 MULTI HCD FTMS 0 0 0 6683 54825.05078125 0.6332873426754921 -2 0.06305694580078125 3 Unmodified _NTIRADPAL_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 24.990960013464015 0.14443998892849796 1 W{I|L} 2 8 17.959 0 0 1.8523 0 0 652.3300038068375 0 652.3300038068375 0 4.006375246153906 0 0 0 0 0 0 0 W{I|L} 1.8523 - 37 NaN NaN 103305 NaN 4540 2144 6683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6687 37.99 NaN 111520 35 0 7670.5 0.261 + 34995 YSVHSMVLK 9 55 532.2826590502006 1062.550765167201 2 532.29833984375 MULTI HCD FTMS 0 0 0 6683 14405.09765625 0.6727868163372202 -2 0.06305694580078125 4 Unmodified _YSVHSMVLK_ ENST00000415930.7_2_19:34891426-34891615:+|nuORF 12.240655878213236 0.2545997876781172 1 [YN]D 3 8 24.437 0 0 2.2998 0 0 0 667.3937881987041 667.3937881987041 1.249387366082999 0 0 0 0 0 1.6989700043360187 0 0.3494850021680094 [YN]D 2.2998 - 54 NaN NaN 115213.1 NaN 4541 2144 6683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6688 37.993 NaN 41923 35 0 9019.6 0.261 + -1 PMMGRYPPF 9 21 564.2552638694311 1126.4959748056622 2 564.2549438476562 MULTI HCD FTMS 0 0 0 6683 14570.328125 0.5989721776918913 1 -0.023212432861328125 5 2 Oxidation (M) _PM(Oxidation (M))M(Oxidation (M))GRYPPF_ REV__ENSG00000204469|ENST00000376033|PRRC2A;REV__nc|ENSG00000204469|P48634-2|PRRC2A;REV__nc|ENSG00000204469|P48634-3|PRRC2A;REV__nc|ENSG00000204469|P48634-4|PRRC2A 2.302733041254933 0.33356062215410776 1 C 1 -1 3.9794 0 0 0.35325 0 0 801.9931194363247 218.4679354303344 1020.4610548666591 0 0 0 0 0 0 0 0 0 C 0.35325 - 2 + NaN NaN 95609.4 NaN 4542 2144 6683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6689 37.997 NaN 37355 35 0 6485.1 0.261 + 34903 YSHVTDLRP 9 27 544.2799958149839 NaN 0 544.2621459960938 PEAK HCD FTMS 0 0 0 6683 3920.144287109375 0.629482238678156 -1 0.033203125 6 Unmodified _YSHVTDLRP_ ENST00000501176.6_1_11:27528415-27661519:+|nuORF;ENST00000530686.5_1_11:27528423-27661519:+|nuORF 3.944395688203298 0.27613285122220627 1 {I|L} 1 8 5.4846 0 0 0.50477 0 0 702.294505934852 268.14093958072505 970.4354455155772 0 0 0 0 0 0 0 0 0 + {I|L} 0.50477 + + 2 + NaN NaN 91435.4 NaN 4543 2144 6683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6691 38.002 NaN 274490 35 0 34635 0.327 + 1943 DAGREYSL 8 54 455.7166557201502 909.4187585071004 2 455.716796875 MULTI HCD FTMS 0 0 0 6690 205902.640625 0.8385311766240543 1 -0.03316497802734375 1 Unmodified _DAGREYSL_ ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 60.07390631473393 0.06540289509817182 1 {[DA]|[EG]}GREYS{I|L} 8 0 + 79.747 0 0 8.769 8.769 96.174 0 0 0 22.47425010840047 63.293578219013824 22.47425010840047 24.63660567114374 0 1.6549471895720984 1.6989700043360187 0.7614393726401688 0 + + {[DA]|[EG]}GREYS{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}REYS{I|L};{[DA]|[EG]}GR[YT]D{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}R[YT]D{I|L} 8.769;6.06;4.8825;2.1735 +;-;-;- + 110 NaN NaN 123884.7 NaN 4544 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6692 38.006 NaN 206720 35 0 19897 0.261 + 9013 HPEKLATVL 9 57 504.2977957027317 1006.5810384722635 2 504.2978515625 MULTI HCD FTMS 0 0 0 6690 77516.1484375 0.035071137586063325 53 -1.4481430053710938 2 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 22.736283301280096 0.1639198954644489 1 HP 2 7 24.776 0 0 2.4614 0 0 0 769.4478243463499 769.4478243463499 10.796896906561031 0 0 0 0 0.3807196863200844 0 0 0 + HP 2.4614 + + 18 + NaN NaN 108457.6 NaN 4545 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6693 38.01 NaN 119100 35 0 23864 0.261 -1 RRRMGSGD 8 35 475.7325875470952 949.4506221609904 2 475.7325439453125 MULTI HCD FTMS 0 0 0 6690 43998.0859375 0.5368408780933084 5 -0.14271926879882812 3 Oxidation (M) _RRRM(Oxidation (M))GSGD_ ENSG00000130024|ENST00000339209|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10 2.577480529830294 0.5381683276125971 1 G 1 -1 3.0989 0 0 0.32639 0 0 177.10113133937563 712.3127535455686 889.4138848849443 0 0 0 0 0 0 0 0 0 G 0.32639 + + 2 + NaN NaN 97747 NaN 4546 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6694 38.013 NaN 62999 35 0 6972.6 0.261 -1 EMEEKYYRF 9 30 437.52879075441194 1309.564542863436 3 437.529052734375 MULTI HCD FTMS 0 0 0 6690 24140.671875 0.6205005140204228 6 -0.16925430297851562 4 Oxidation (M) _EM(Oxidation (M))EEKYYRF_ ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 4.189502756095605 0.319257502753388 1 Y[R{M(Oxidation (M))|F}] 3 -1 4.437 0 0 0.33881 0 0 825.3209343202703 0 825.3209343202703 0 3.7236374744834673 0 0 0 0 0 0 0 Y[R{M(Oxidation (M))|F}] 0.33881 + + 4 + NaN NaN 95406.1 NaN 4547 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6695 38.017 NaN 36922 35 0 5428.3 0.261 -1 TYRNVMEQF 9 36 602.2771905527773 1202.5398281723544 2 602.2776489257812 MULTI HCD FTMS 0 0 0 6690 26334.359375 1 0 0 5 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ BAIAP2L1|p.T228Vfs*8|1|0.03|ENSG00000006453|chr7:98312223-98312224|-/CCCCTTTATTACT|frameshift_variant;ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF 4.897010918128616 0.31389406404703984 1 {M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 4 -1 12.703 0 0 1.0564 0 0 633.318651267775 0 633.318651267775 0 12.703037561203843 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 1.0564 + + 2 NaN NaN 89625.4 NaN 4548 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6696 38.02 NaN 32648 35 0 4320.6 0.261 + 22008 QFLVMVLKC 9 22 540.8002731002335 1079.585993267267 2 541.2855834960938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QFLVMVLKC_ REV__ENSG00000080293|ENST00000019103|SCTR 1.844237919475145 0.33703635659052655 1 {I|L}[KC] 3 -1 10.458 0 0 0.96867 0 0 717.3784657209 0 717.3784657209 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}[KC] 0.96867 + + 1 NaN NaN 80581.5 NaN 4549 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6697 38.023 NaN 54895 35 0 8775.1 0.261 + 28622 TQTHPTEE 8 30 471.71167127054736 941.4087896078947 2 471.7114562988281 MULTI HCD FTMS 0 0 0 6690 9968.5302734375 0.7166602251477601 1 -0.03316497802734375 7 Unmodified _TQTHPTEE_ CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93174.9 NaN 4550 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6698 38.026 NaN 31159 35 0 8954 0.261 + 16321 LRFWKHWH 8 12 605.3238614526128 1208.6331699720256 2 605.8253173828125 MULTI HCD FTMS 0 0 0 6690 5837.3427734375 0.5530287084735039 1 -0.03316497802734375 8 Unmodified _LRFWKHWH_ chr1:24319941-24331426|475|14.47|0.52|4.79|+|ENST00000524724|GRHL3,GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89031 NaN 4551 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6699 38.03 NaN 50361 35 0 8587.8 0.261 -1 0 34 527.1554602371865 1052.296367541173 2 527.1558227539062 MULTI HCD FTMS 0 0 0 6690 7377.646484375 0.281891301675868 13 -0.37512969970703125 9 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92972.6 NaN 4552 2145 6690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6701 38.035 NaN 154760 35 0 21666 0.327 + 27760 TATLHEPIM 9 44 514.7575535875692 1027.5005542419383 2 514.7575073242188 MULTI HCD FTMS 0 0 0 6700 67441.390625 0.7092398549099908 5 -0.13608932495117188 1 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 48.345845343767074 0.03388484103555672 1 P{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.5229 0 0 652.3179503374446 0 652.3179503374446 0 22.508651330273768 0 0 0 1 0 0 0 + P{I|L}{M(Oxidation (M))|F} 3.5229 + + 48 + NaN NaN 108231.8 NaN 4553 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6702 38.039 NaN 112800 35 0 8648 0.261 + 9204 HPLNVGIRL 9 40 509.8112649911413 1017.6079770490826 2 509.811279296875 MULTI HCD FTMS 0 0 0 6700 24749.244140625 0.3102495812775896 5 -0.13608932495117188 2 Unmodified _HPLNVGIRL_ ENSG00000171865|ENST00000315212|RNASEH1;ENST00000451327.2_1_1:210477498-210477561:+|nuORF;RNASEH1|p.G178V|1|0.06|ENSG00000171865|chr2:3549089-3549089|C/A|missense_variant 10.823927491677226 0.26684000660059787 1 HP 2 7 22.206 0 0 2.1822 0 0 0 780.4757174127561 780.4757174127561 6.00833760139686 0 0 0 0 0.4247425010840047 0 0 0 + HP 2.1822 + + 27 + NaN NaN 105354.6 NaN 4554 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6703 38.043 NaN 114040 35 0 13223 0.261 -1 YVHMVTHF 8 44 525.247264992183 1048.4799770511659 2 525.2473754882812 MULTI HCD FTMS 0 0 0 6700 29606.583984375 0.24158018470705545 36 -0.985504150390625 3 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 26.34127834903884 0.3999841173197873 1 YVH 3 -1 44.877 0 0 4.2802 0 0 0 646.2667330377561 646.2667330377561 27.88750309660614 0 0 0 0 0.805462187404089 2 0 0 YVH 4.2802 + + 33 + NaN NaN 90388.5 NaN 4555 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6704 38.046 NaN 41145 35 0 5126 0.261 + 11879 KFEEMWAEY 9 26 616.7682800751417 1231.5220072170832 2 616.7683715820312 MULTI HCD FTMS 0 0 0 6700 16440.552734375 0.8453428360505115 2 -0.053119659423828125 4 Unmodified _KFEEMWAEY_ REV__ENSG00000162600|ENST00000371226|OMA1;REV__nc|ENSG00000162600|Q96E52-2|OMA1 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89329.1 NaN 4556 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6705 38.05 NaN 27508 35 0 5387.9 0.261 -1 VYNENLVHM 9 17 567.7660379237918 1133.5175229143836 2 567.7662353515625 MULTI HCD FTMS 0 0 0 6700 12158.1455078125 0.5417345107143845 2 -0.053119659423828125 5 Oxidation (M) _VYNENLVHM(Oxidation (M))_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 7.910154910731844 0.2910521888787154 1 V{[{M(Oxidation (M))|F}H]|[RQ]} 3 -1 10.458 0 0 0.92258 0 0 732.3437996251242 0 732.3437996251242 0 10.45757490560675 0 0 0 0 0 0 0 V{[{M(Oxidation (M))|F}H]|[RQ]} 0.92258 + + 3 + NaN NaN 93242.4 NaN 4557 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6706 38.053 NaN 40080 35 0 6396.4 0.261 + 19485 NPYSRETEF 9 34 571.7588561462754 1141.5031593593508 2 571.7589721679688 MULTI HCD FTMS 0 0 0 6700 28155.373046875 1 0 0 6 Unmodified _NPYSRETEF_ ENSG00000135473|ENST00000440411|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant 17.11289562659939 0.2125047172822487 1 E{M(Oxidation (M))|F} 2 7 22.959 0 0 2.0113 0 0 847.384569236525 0 847.384569236525 0 15.511525224473813 0 0 0 0 0 0.5 0 + E{M(Oxidation (M))|F} 2.0113 + + 6 NaN NaN 94676.3 NaN 4558 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6707 38.056 NaN 60601 35 0 5150.3 0.261 + -1 YVIMYMPLD 9 27 580.7719995076426 1159.529446082085 2 580.771484375 MULTI HCD FTMS 0 0 0 6700 11324.837890625 0.04445612446470024 19 -0.549102783203125 7 Oxidation (M) _YVIM(Oxidation (M))YMPLD_ REV__tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1 11.640296217721598 0.25978676193971967 1 [YV]{I|L} 3 -1 30.942 0 0 2.6685 0 0 0 781.2921236627561 781.2921236627561 10.496812376923046 0 0 0 0 0.3494850021680094 2 0 0 [YV]{I|L} 2.6685 + + 30 + NaN NaN 85331.9 NaN 4559 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6708 38.06 NaN 27233 35 0 4785 0.262 -1 0 22 480.2558055089815 958.497058084763 2 480.2546081542969 MULTI HCD FTMS 0 0 0 6700 17786.521484375 0.03163881557480251 23 -0.6717567443847656 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104292.6 NaN 4560 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6709 38.063 NaN 67759 35 0 7055.3 0.261 -1 DLHHRWTM 8 27 556.2582785084871 1110.5020040837742 2 556.259033203125 MULTI HCD FTMS 0 0 0 6700 16916.986328125 0.10610880412671818 35 -0.9557609558105469 9 Oxidation (M) _DLHHRWTM(Oxidation (M))_ ENSG00000154678|ENST00000396191|PDE1C;nc|ENSG00000154678|Q14123-2|PDE1C;nc|ENSG00000154678|Q14123-3|PDE1C 3.944395688203298 0.5361403129012058 1 T{M(Oxidation (M))|F} 2 -1 21.198 0 0 1.9089 0 0 844.412564175444 0 844.412564175444 0 11.593793813122062 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 1.9089 + + 4 NaN NaN 90886.8 NaN 4561 2146 6700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6711 38.068 NaN 382910 35 0 38601 0.327 + 1536 AYVHMVTHF 9 60 560.7657570063983 1119.5169610795965 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6710 175199.78125 0.17847224839660006 37 -1.0052833557128906 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 92.8221339359638 0.0044520161739443126 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 95.143 0 0 8.4986 8.4986 94.288 0 0 0 74.17403451429223 10.642492736872597 10.642492736872597 13.750612633917001 0 2.6549471895720984 1.6989700043360187 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]A[PA]H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]A[PA]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F} 8.4986;7.2703;5.5546;4.7631;4.745;4.5842;2.5996 +;-;-;-;-;-;- + 480 + NaN NaN 141926.3 NaN 4562 2147 6710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6712 38.073 NaN 247810 35 0 27511 0.261 -1 RQEYLKLEM 9 44 613.3159539454991 1224.6173549577982 2 613.316162109375 MULTI HCD FTMS 0 0 0 6710 159294.9375 0.9437427152960662 1 -0.019962310791015625 2 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 19.256988751693697 0.19398022840297344 1 HPVN{I|L} 5 -1 39.935 0 0 3.261 0 0 0 661.2862642877561 661.2862642877561 -2.480107526455697 0 -2.480107526455697 0 0 0.8252574989159953 0 0 0 HPVN{I|L} 3.261 - 123 + NaN NaN 117617.1 NaN 4563 2147 6710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6713 38.076 NaN 149880 35 0 21278 0.264 -1 SKFQQKLAEM 10 47 409.21283914633733 1224.616688039212 3 409.21282958984375 MULTI HCD FTMS 0 0 0 6710 58230.8125 0.9147169959513872 1 -0.019962310791015625 3 Oxidation (M) _SKFQQKLAEM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion 10.315234532428624 0.4146267933501748 1 E{M(Oxidation (M))|F} 2 -1 34.464 0 0 2.8143 0 0 930.5282003456558 0 930.5282003456558 0 13.494850021680094 0 0 0 1 0 0.5 0 E{M(Oxidation (M))|F} 2.8143 + + 21 + NaN NaN 102851.3 NaN 4564 2147 6710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6714 38.08 NaN 175920 35 0 17815 0.261 -1 HPTGKMFIL 9 43 530.2863593624666 1058.558165791733 2 530.2860717773438 MULTI HCD FTMS 0 0 0 6710 60972.56640625 0.41574643334900185 -10 0.2953529357910156 4 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 1 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3754551698703 720.3754551698703 29.960762528683702 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 13 + NaN NaN 117368.6 NaN 4565 2147 6710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6715 38.083 NaN 72011 35 0 8089.1 0.261 + 31632 VYISEHEHF 9 31 580.7719995076426 1159.529446082085 2 580.7561645507812 MULTI HCD FTMS 0 0 0 6710 8231.7314453125 0.032314005836299266 20 -0.5722846984863281 5 Unmodified _VYISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 12.531546534597751 0.2520865569484384 1 [YV]{I|L}MEEET 8 4 24.772 0 0 2.1364 0 0 0 162.09036942660762 162.09036942660762 11.27690301622011 0 0 0 0 0.8182503180159344 1.5228787452803376 0.4247425010840047 0 [YV]{I|L}MEEET 2.1364 - 72 NaN NaN 96762.3 NaN 4566 2147 6710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6717 38.088 NaN 658060 35 0 207180 0.326 + 9124 HPHAVNEIAL 10 51 550.795964060612 1099.577375188024 2 550.7962036132812 MULTI HCD FTMS 0 0 0 6716 278283.875 0.7346909546082426 3 -0.08296966552734375 1 Unmodified _HPHAVNEIAL_ ENSG00000157827|ENST00000288670|FMNL2;ENSG00000161791|ENST00000335154|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 53.40400417844725 0.06540992187319636 1 E{I|L}A{I|L} 4 6 45.349 0 0 4.1243 0 0 655.316698142775 0 655.316698142775 0 24.151603310239906 0 0 0 0.805462187404089 0 0.7742275032520141 0 + E{I|L}A{I|L} 4.1243 + + 202 NaN NaN 176519.4 NaN 4567 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6718 38.093 NaN 170010 35 0 13885 0.261 + 9948 IDSLEWVR 8 61 509.2713583655979 1016.5281637979958 2 509.2823791503906 MULTI HCD FTMS 0 0 0 6716 2698.745361328125 0.32674741210619973 3 -0.08296966552734375 2 Unmodified _IDSLEWVR_ REV__ENSG00000085832|ENST00000371733|EPS15;REV__ENST00000371727.5_1_1:51924189-51984903:-|nuORF;REV__ENST00000464478.5_1_1:51924787-51930980:-|nuORF;REV__ENST00000471391.1_1_1:51926726-51984921:-|nuORF;REV__EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant 13.50788311687929 0.4944073034352369 1 {NN|[MP]|[D{I|L}]|[EV]}VTEVVSR 9 -1 + 69.843 0 0 6.8707 6.8707 92.957 0 0 0 42.632192780232785 14.09256854528806 14.09256854528806 23.521825181113627 0 0 2 0 0 {NN|[MP]|[D{I|L}]|[EV]}VTEVVSR;{NN|[MP]|[D{I|L}]|[EV]}VT[DV]{I|L}SR;{NN|[MP]|[D{I|L}]|[EV]}V[VS]E{I|L}SR;{NN|[MP]|[D{I|L}]|[EV]}[TA]{I|L}E{I|L}SR;[TP]DS[KQ]VSR;{NN|[MP]|[D{I|L}]|[EV]}V[VS]{[HG]|PP}[YK];{NN|[MP]|[D{I|L}]|[EV]}[TA]{I|L}{[HG]|PP}[YK] 6.8707;4.5568;3.7913;3.3219;2.7122;1.6332;1.1638 -;-;-;-;-;-;- 215 + NaN NaN 103413.6 NaN 4568 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6719 38.096 NaN 127400 35 0 21606 0.261 -1 NLPQHPDVEM 10 25 598.2736986617595 1194.5328443903188 2 598.27392578125 MULTI HCD FTMS 0 0 0 6716 49626.19921875 0.7190775540135659 -5 0.1427001953125 3 Oxidation (M) _NLPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 14.405379775768559 0.37636895476610294 1 E{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.174 0 0 900.4462757794937 0 900.4462757794937 0 18.979400086720375 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.174 + + 10 NaN NaN 115671.1 NaN 4569 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6720 38.099 NaN 45474 35 0 7655.9 0.261 + 1669 CDSGVTCALW 10 23 527.7190304728251 NaN 0 527.70703125 PEAK HCD FTMS 0 0 0 6716 2841.49951171875 0.3492732645289026 1 -0.029872894287109375 4 Unmodified _CDSGVTCALW_ REV__tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 3.2813086475875832 0.33737594360511275 1 WE 2 -1 7.9588 0 0 0.75552 0 0 131.1182660840771 604.1742647760374 735.2925308601145 0 0 0 0 0 0 0 0 0 WE 0.75552 - 4 + NaN NaN 88018 NaN 4570 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6721 38.103 NaN 28142 35 0 6380.5 0.261 -1 MLFLRTVPC 9 16 548.287628362728 1094.560703792256 2 548.28759765625 MULTI HCD FTMS 0 0 0 6716 7541.6123046875 0.06987790593806263 8 -0.229095458984375 5 Oxidation (M) _M(Oxidation (M))LFLRTVPC_ ENST00000537834.5_1_19:40771213-40785028:-|nuORF 0.6014990680409731 0.3464572424761564 1 Q 1 -1 5.4846 0 0 0.50107 0 0 165.18791434088718 798.2988375299436 963.4867518708309 0 0 0 0 0 0 0 0 0 Q 0.50107 - 1 + NaN NaN 85615.7 NaN 4571 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6722 38.106 NaN 29455 35 0 5499.2 0.261 + 3775 EPCLYVEIPGQ 11 20 624.3031499317834 1246.5917469303668 2 624.302734375 MULTI HCD FTMS 0 0 0 6716 17231.505859375 0.8061300757234221 -2 0.053119659423828125 6 Unmodified _EPCLYVEIPGQ_ REV__E2F3|p.E454Rfs*12|1|0.29|ENSG00000112242|chr6:20490391-20490392|-/C|frameshift_variant;REV__ENSG00000007968|ENST00000361729|E2F2;REV__ENSG00000112242|ENST00000346618|E2F3;REV__nc|ENSG00000112242|O00716-2|E2F3 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 102148.4 NaN 4572 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6723 38.109 NaN 128000 35 0 12207 0.262 + 23382 RKTYESNI 8 45 505.76668013307057 1009.5188073329412 2 505.7668151855469 MULTI HCD FTMS 0 0 0 6716 11489.126953125 0.05259884062876758 13 -0.3865852355957031 7 Unmodified _RKTYESNI_ REV__ENSG00000075651|ENST00000351298|PLD1;REV__nc|ENSG00000075651|Q13393-2|PLD1;REV__nc|ENSG00000075651|Q13393-3|PLD1;REV__nc|ENSG00000075651|Q13393-4|PLD1;REV__PLD1|p.N772Tfs*14|1|0.18|ENSG00000075651|chr3:171662085-171662085|T/-|frameshift_variant 15.847184025352803 0.47719562709667024 1 ASN{I|L} 4 -1 38.175 0 0 3.7815 0 0 606.3155724738555 0 606.3155724738555 0 31.18562527100117 0 0 0 0 0 0.9247425010840047 0 ASN{I|L} 3.7815 - 13 NaN NaN 98763.2 NaN 4573 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6724 38.113 NaN 113530 35 0 9611.3 0.261 + 31049 VSTVASDHF 9 49 481.73252688948577 961.4505008457716 2 481.716064453125 MULTI HCD FTMS 0 0 0 6716 7400.0859375 0.24326452475493412 -12 0.3418731689453125 8 Unmodified _VSTVASDHF_ REV__DCAF4|p.R366H|1|0.15|ENSG00000119599|chr14:72955614-72955614|G/A|missense_variant;REV__ENSG00000119599|ENST00000358377|DCAF4;REV__ENSG00000182308|ENST00000333141|DCAF4L1;REV__nc|ENSG00000119599|Q8WV16-2|DCAF4;REV__nc|ENSG00000119599|Q8WV16-3|DCAF4;REV__nc|ENSG00000119599|Q8WV16-4|DCAF4;REV__nc|ENSG00000119599|Q8WV16-5|DCAF4 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F} 1 -1 16.747 0 0 1.7419 0 0 796.3713973074888 0 796.3713973074888 0 2.768024924119672 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F} 1.7419 + + 8 + NaN NaN 96357 NaN 4574 2148 6716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6726 38.118 NaN 336820 35 0 48323 0.327 + 4316 EVSPPVTVR 9 54 492.27957651086103 982.5446000885221 2 492.27972412109375 MULTI HCD FTMS 0 0 0 6725 158689.71875 1 0 0 1 Unmodified _EVSPPVTVR_ ENSG00000159339|ENST00000375448|PADI4 40.23920728925047 0.06424668180817725 1 {NN|[MP]|[D{I|L}]|[EV]}SPPVTVR 9 0 + 69.804 0 0 7.1044 7.1044 92.878 0 0 0 48.40288749933073 16.478174818886373 16.478174818886373 18.922815857436532 0 0.7742275032520141 1.5228787452803376 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}SPPVTVR;{NN|[MP]|[D{I|L}]|[EV]}SPPVR{[TV]|[{I|L}S]};{NN|[MP]|[D{I|L}]|[EV]}SP[RV]P{[TV]|[{I|L}S]};[{I|L}P]{[DS]|[MA]|[CV]|TT}PVTVR;[{I|L}P]{[DS]|[MA]|[CV]|TT}PVR{[TV]|[{I|L}S]} 7.1044;5.1785;3.8829;2.6789;0.75298 +;-;-;-;- + 182 + NaN NaN 134726.8 NaN 4575 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6727 38.122 NaN 274930 35 0 53041 0.261 + 19607 NTVDEVYVSR 10 41 591.2934643916728 1180.5723758501456 2 591.29345703125 MULTI HCD FTMS 0 0 0 6725 141731.703125 0.5632825154456952 -2 0.049835205078125 2 Unmodified _NTVDEVYVSR_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 122.570105466311 3.4461778347676954E-05 1 {[QS]|[NT]}VDEVYV{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 113.94 0 0 9.6513 9.6513 99.155 0 0 0 20.691198607853124 5.764837301042718 5.764837301042718 113.94045490946587 0 3.4247425010840047 1.5228787452803376 2.341129063296272 1.5189301784845295 + + {[QS]|[NT]}VDEVYV{[QD]|[EN]|[WG]|[KD]|[RS]} 9.6513 + + 215 NaN NaN 143429 NaN 4576 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6728 38.126 NaN 306470 35 0 22750 0.262 + 25989 SPDSGVYEM 9 65 500.7000073297071 999.3854617262142 2 500.7001953125 MULTI HCD FTMS 0 0 0 6725 46145.8671875 0.2531140938366392 20 -0.5887641906738281 3 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 42.09456458481378 0.05572955244001856 1 YE{M(Oxidation (M))|F} 3 6 40.662 0 0 4.0687 0 0 542.2335578711945 0 542.2335578711945 0 33.672137691284405 0 0 0 1.274227503252014 0 0.6237125054200234 0 + YE{M(Oxidation (M))|F} 4.0687 + + 28 + NaN NaN 126499.9 NaN 4577 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6729 38.129 NaN 87040 35 0 9126.9 0.261 + 27889 TEEDLDLVTL 10 27 574.2907481779872 1146.5669434227743 2 574.290771484375 MULTI HCD FTMS 0 0 0 6725 27850.013671875 0.006303913125979964 95 -2.608203887939453 4 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 1 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3542901772051 0 815.3542901772051 0 21.95046257204389 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 10 NaN NaN 113290.2 NaN 4578 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6730 38.133 NaN 116260 35 0 12120 0.262 -1 MDCPQPSL 8 46 482.1989949664403 962.3834369996806 2 482.1992492675781 MULTI HCD FTMS 0 0 0 6725 52732.6328125 0.5142315424202852 -3 0.0829925537109375 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DC(Carbamidomethyl (C))PQPSL_ ENST00000502536.5_1_5:38876381-38876444:+|nuORF 11.640296217721598 0.50814828952472 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7654 0 0 797.3042113910853 0 797.3042113910853 0 10.791812460476251 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7654 + + 11 + NaN NaN 98178.1 NaN 4579 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6731 38.136 NaN 41466 35 0 6405 0.261 + -1 YVMACRSV 8 33 472.7195459221004 943.4245389110008 2 472.7195129394531 MULTI HCD FTMS 0 0 0 6725 17975.10546875 0.8221273080321398 -1 0.029872894287109375 6 Oxidation (M) _YVM(Oxidation (M))ACRSV_ REV__ENSG00000185842|ENST00000682510|DNAH14;REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14;REV__nc|ENSG00000185842|Q0VDD8|DNAH14 4.3292370932331545 0.5355693454741696 1 SV 2 -1 25.969 0 0 2.7526 0 0 739.313578311542 0 739.313578311542 0 25.969100130080562 0 0 0 0.5 0 0 0 SV 2.7526 + + 2 NaN NaN 101723.1 NaN 4580 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6732 38.139 NaN 28316 35 0 7199.8 0.261 + 1683 CFIFCWFPN 9 17 588.7547324169923 1175.4949119007845 2 588.7556762695312 MULTI HCD FTMS 0 0 0 6725 12647.2900390625 0.8288368863317824 2 -0.053096771240234375 7 Unmodified _CFIFCWFPN_ ENSG00000135577|ENST00000258042|NMBR 0.6014990680409731 0.3464572424761564 1 E 1 9 6.9897 0 0 0.59462 0 0 253.1089388556657 790.3191622369749 1043.4281010926406 0 0 0 0 0 0 0 0 0 E 0.59462 - 1 + NaN NaN 96270.7 NaN 4581 2149 6725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6734 38.145 NaN 312070 35 0 33676 0.327 + 20582 PEIEVQLSA 9 68 493.2634668947007 984.5123808562014 2 494.2499694824219 MULTI HCD FTMS 0 0 0 6733 5343.53173828125 0.749118394564946 -2 0.05643463134765625 1 Unmodified _PEIEVQLSA_ REV__ENSG00000120458|ENST00000374979|MSANTD2;REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2;REV__nc|ENSG00000120458|Q6P1R3-3|MSANTD2 6.723162845929126 0.3000504726104499 1 PSR[EP]{I|L}{[SA]|[TG]} 8 -1 20.865 0 0 2.1193 0 0 129.06743748212426 0 129.06743748212426 0 -0.10422483423212725 -0.10422483423212725 0 0 0 0 0.75 0 PSR[EP]{I|L}{[SA]|[TG]} 2.1193 - 83 + NaN NaN 146937.1 NaN 4582 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6735 38.149 NaN 312660 35 0 25807 0.261 + 8956 HPDVAKVSF 9 67 500.26655880682017 998.5185646804404 2 500.28271484375 MULTI HCD FTMS 0 0 0 6733 41103.3984375 0.8311492482906001 3 -0.0763397216796875 2 Unmodified _HPDVAKVSF_ ENSG00000143149|ENST00000354775|ALDH9A1;ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1 18.1463463914782 0.20357593197100715 1 YE{M(Oxidation (M))|F} 3 8 25.718 0 0 2.5757 0 0 541.3670887056342 0 541.3670887056342 0 8.539171939081168 0 0 0 0 0 0.5796896906561032 0 YE{M(Oxidation (M))|F} 2.5757 - 81 + NaN NaN 127488.8 NaN 4583 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6736 38.153 NaN 439920 35 0 23774 0.261 + 21729 QADSLERSL 9 78 509.76165557772026 1017.5087582222405 2 509.7618408203125 MULTI HCD FTMS 0 0 0 6733 161158.421875 0.34887053586860994 -4 0.10955429077148438 3 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 74.19965305603844 0.007729275404663812 1 [QA]DS{I|L}ERS{I|L} 9 0 + 44.776 0 0 4.4006 4.4006 82.777 0 0 0 7.147642715192504 5.105742396127916 5.105742396127916 5.105742396127916 0 0.9124379954164592 0 0.6989700043360187 0 + + [QA]DS{I|L}ERS{I|L};[QA]DS{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]DS{I|L}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]ETEVV{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]DS[KQ]V{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]ET[DV]RS{I|L};[QA]E[VS]ERS{I|L};[DN]VTEVV{[QD]|[EN]|[WG]|[KD]|[RS]};[DN][TA]{I|L}ERS{I|L};[QA]ET[DV]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.4006;3.8988;3.134;2.7599;2.5431;2.4795;2.2883;2.1682;1.9924;1.9777 +;-;-;-;-;-;-;-;-;- + 614 + NaN NaN 149222.6 NaN 4584 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6737 38.156 NaN 68162 35 0 7593.7 0.261 + 3472 EGHAPAESI 9 33 455.7166557201502 909.4187585071004 2 455.7169189453125 MULTI HCD FTMS 0 0 0 6733 50321.88671875 0.20493409289036799 6 -0.17266082763671875 4 Unmodified _EGHAPAESI_ REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF 20.453626601364224 0.18364154288633264 1 S{I|L} 2 -1 29.776 0 0 3.2742 0 0 691.2910595081029 0 691.2910595081029 0 29.776296993281406 0 0 0 0.5 0 0.3807196863200844 0 S{I|L} 3.2742 + + 5 NaN NaN 90805.1 NaN 4585 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6738 38.159 NaN 104970 35 0 12741 0.261 + 19597 NTIRADPAL 9 32 485.7693981192467 969.5242433052935 2 485.76983642578125 MULTI HCD FTMS 0 0 0 6733 28067.685546875 0.3242114643167964 4 -0.11621475219726562 5 Unmodified _NTIRADPAL_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 5.731851221503515 0.3075653528928475 1 {I|L}[PA] 3 6 15.458 0 0 1.5943 0 0 670.3386097638687 0 670.3386097638687 0 9.973024840566469 0 0 0 0.5 0 0 0 {I|L}[PA] 1.5943 - 3 NaN NaN 91261.5 NaN 4586 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6739 38.163 NaN 146430 35 0 28115 0.261 -1 SSGPVDPMM 9 29 476.69134176815527 951.3681306031106 2 476.6910705566406 MULTI HCD FTMS 0 0 0 6733 40723.640625 0.5972270772602393 7 -0.20586395263671875 6 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 1 D 1 -1 14.732 0 0 1.5485 0 0 427.20724850423227 406.1112431507236 833.3184916549559 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 7 + NaN NaN 106023 NaN 4587 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6740 38.166 NaN 72786 35 0 12372 0.261 -1 HATFNDPVM 9 34 524.2316991048964 1046.4488452765927 2 524.2315673828125 MULTI HCD FTMS 0 0 0 6733 24348.5390625 0.4500629473209337 9 -0.273773193359375 7 Oxidation (M) _HATFNDPVM(Oxidation (M))_ ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 13.042465956692817 0.2476723265019929 1 D[VP]{M(Oxidation (M))|F} 4 -1 28.5 0 0 2.7235 0 0 570.2523670880875 0 570.2523670880875 0 17.53083433768431 0 0 0 1.2302046884880937 0 0 0 D[VP]{M(Oxidation (M))|F} 2.7235 + + 9 NaN NaN 86050.8 NaN 4588 2150 6733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6742 38.171 NaN 152860 35 0 18125 0.327 -1 QPMQPTPSM 9 40 516.7280366275859 1031.4415203219717 2 516.728271484375 MULTI HCD FTMS 0 0 0 6741 42151.31640625 0.7958604072107847 2 -0.0498046875 1 Oxidation (M) _QPM(Oxidation (M))QPTPSM_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 24.020572477871973 0.15282392193088168 1 T[VG][PS]M 6 -1 9.0018 0 0 0.87274 0 0 441.1944752423844 0 441.1944752423844 0 2.0121312474125137 0 0 0 0.5 0 0.4247425010840047 0 T[VG][PS]M 0.87274 - 11 NaN NaN 97894.3 NaN 4589 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6743 38.176 NaN 117910 35 0 21253 0.261 + 14528 LFDQHVVN 8 28 486.2516580038364 NaN 0 486.26141357421875 PEAK HCD FTMS 0 0 0 6741 5240.12646484375 1 0 0 2 Unmodified _LFDQHVVN_ ENSG00000185002|ENST00000332958|RFX6 4.75600775471527 0.38822285293237185 1 {I|L} 1 7 6.9897 0 0 0.72022 0 0 187.0653980419916 667.3167718909328 854.3821699329244 0 0 0 0 0 0 0 0 0 + {I|L} 0.72022 + + 2 + NaN NaN 97785.6 NaN 4590 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6744 38.179 NaN 73141 35 0 11103 0.261 + 17812 MFVGHATAL 9 29 473.7459698781829 945.4773868231658 2 474.2558288574219 MULTI HCD FTMS 0 0 0 6741 2851.694580078125 0.5198898507691476 -2 0.053096771240234375 3 Unmodified _MFVGHATAL_ ENSG00000164588|ENST00000303230|HCN1;HCN1|p.Q398L|1|0.14|ENSG00000164588|chr5:45396529-45396529|T/A|missense_variant;HCN1|p.Q689Sfs*91|1|0.12|ENSG00000164588|chr5:45262529-45262529|G/-|frameshift_variant;HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant 4.75600775471527 0.31496297302216103 1 A{I|L} 2 7 6.4537 0 0 0.68258 0 0 130.07467284574426 628.2570894830686 758.3317623288128 0 0 0 0 0 0 0 0 0 + A{I|L} 0.68258 + + 4 + NaN NaN 92306.3 NaN 4591 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6745 38.182 NaN 147110 35 0 15945 0.261 + 9298 HPPRHQDDT 9 49 551.7545627920932 1101.4945726509864 2 552.2561645507812 MULTI HCD FTMS 0 0 0 6741 25327.5859375 0.4311100242261863 8 -0.2472381591796875 4 Unmodified _HPPRHQDDT_ ENST00000586392.1_1_19:34887279-34887507:+|nuORF 14.838274106304384 0.23215694253501695 1 {[MS]|[{M(Oxidation (M))|F}A]}MQVEH[Q{I|L}] 9 9 + 74.12 0 0 6.729 6.729 89.286 0 0 0 67.1301359554232 4.762036441594191 4.762036441594191 9.208187539523749 0 2.0189301784845295 1.3010299956639813 0 0.3807196863200844 {[MS]|[{M(Oxidation (M))|F}A]}MQVEH[Q{I|L}];{[MS]|[{M(Oxidation (M))|F}A]}M[AG]VEH[Q{I|L}];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}QVEH[Q{I|L}];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[AG]VEH[Q{I|L}] 6.729;5.8931;4.8207;3.9847 -;-;-;- 143 + NaN NaN 103867.7 NaN 4592 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6746 38.186 NaN 33861 35 0 5620.4 0.263 -1 0 28 441.29743767595807 440.2901612093581 1 441.2973327636719 MULTI HCD FTMS 0 0 0 6741 29775.533203125 0.6076125981063463 -42 1.1442642211914062 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85576.3 NaN 4593 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6747 38.189 NaN 41124 35 0 5263.8 0.261 + -1 DSTDALCELS 10 24 555.7345023579659 1109.4544517827317 2 555.7340698242188 MULTI HCD FTMS 0 0 0 6741 16081.9169921875 0.09024261802687246 41 -1.100433349609375 6 Carbamidomethyl (C) _DSTDALC(Carbamidomethyl (C))ELS_ REV__ENSG00000164938|ENST00000342697|TP53INP1;REV__nc|ENSG00000164938|Q96A56-2|TP53INP1 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96254.6 NaN 4594 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6748 38.192 NaN 48623 35 0 8196.8 0.261 + 3635 ELFMMEATL 9 33 542.7574390166177 1083.5003251000353 2 542.7587280273438 MULTI HCD FTMS 0 0 0 6741 16166.44921875 0.9718275033074358 -4 0.10293197631835938 7 Unmodified _ELFMMEATL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 3.944395688203298 0.32111559684428237 1 SV 2 9 5.5732 0 0 0.51437 0 0 486.21689111741654 408.1651705377563 894.3820616551728 0 0 0 0 0 0 0 0 0 SV 0.51437 - 3 + NaN NaN 92146.8 NaN 4595 2151 6741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6750 38.198 NaN 84445 35 0 13872 0.327 -1 YVHMVTHF 8 38 525.247264992183 1048.4799770511659 2 525.2477416992188 MULTI HCD FTMS 0 0 0 6749 27993.017578125 0.22841400279749452 42 -1.1368675231933594 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 13.50788311687929 0.4944073034352369 1 [YV]H 3 -1 30.458 0 0 2.9049 0 0 0 646.2683809869749 646.2683809869749 14.973024840566467 0 0 0 0 0 2 0 0 [YV]H 2.9049 + + 5 + NaN NaN 100808.3 NaN 4596 2152 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6751 38.202 NaN 26050 35 0 6587.3 0.261 -1 TYRNVMEQF 9 14 602.2771905527773 1202.5398281723544 2 602.2772216796875 MULTI HCD FTMS 0 0 0 6749 15611.748046875 0.5928280929322968 7 -0.22071075439453125 2 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ BAIAP2L1|p.T228Vfs*8|1|0.03|ENSG00000006453|chr7:98312223-98312224|-/CCCCTTTATTACT|frameshift_variant;ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF 2.9952420565917617 0.3283108881486655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96118.3 NaN 4597 2152 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6752 38.206 NaN 46602 35 0 4561.4 0.261 + -1 MSGGTSLPLHP 11 24 556.7717663498873 1111.5289797665746 2 556.7721557617188 MULTI HCD FTMS 0 0 0 6749 12420.896484375 0.7257231613621938 1 -0.02327728271484375 3 Oxidation (M) _M(Oxidation (M))SGGTSLPLHP_ REV__ENSG00000176542|ENST00000316407|USF3 7.608950283845883 0.38555039536024605 1 TN{[ES]|[DT]|[{I|L}C]} 4 -1 26.198 0 0 2.3569 0 0 662.3753529279312 0 662.3753529279312 0 26.197887582883936 0 0 0 1 0 0 0 TN{[ES]|[DT]|[{I|L}C]} 2.3569 - 12 NaN NaN 107502.2 NaN 4598 2152 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6753 38.209 NaN 87907 35 0 11633 0.261 -1 EVPATEEGM 9 42 489.70785559439844 NaN 0 489.70819091796875 PEAK HCD FTMS 0 0 0 6749 8044.6279296875 0.3630469646921943 -3 0.07962417602539062 4 Oxidation (M) _EVPATEEGM(Oxidation (M))_ ENSG00000203740|ENST00000439373|NTMT2 15.847184025352803 0.21527282152051216 1 EE 2 -1 20.217 0 0 2.0684 0 0 222.07023892141564 494.22638879947505 716.2966277208907 0 0 0 0 0 0.9247425010840047 0 0 0 EE 2.0684 + + 5 + NaN NaN 98797.4 NaN 4599 2152 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6754 38.212 NaN 21717 35 0 5386.4 0.261 + 9389 HPTDVDYRVM 10 17 616.7900494785625 1231.565546023925 2 616.7897338867188 MULTI HCD FTMS 0 0 0 6749 6636.7978515625 0.1264516084616627 12 -0.3566436767578125 5 Unmodified _HPTDVDYRVM_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 3.2813086475875832 0.45793521633868084 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84404.4 NaN 4600 2152 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6755 38.216 NaN 12219 35 0 3724.6 0.261 + 5085 FEEYRFFP 8 10 567.7663084414376 NaN 0 567.7658081054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FEEYRFFP_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86469.7 NaN 4601 2152 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6757 38.221 NaN 316710 35 0 31825 0.327 + 1537 AYVHMVTHF 9 54 560.7657570063983 1119.5169610795965 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6756 131108.53125 0.1335574404786159 43 -1.17645263671875 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 100.57 0 0 8.9833 8.9833 88.803 0 0 0 1.5752217873205154 1.5752217873205154 1.5752217873205154 1.5752217873205154 0 3.048455006504028 1.6989700043360187 0.3252574989159953 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[Y{I|L}]H{M(Oxidation (M))|F};AYV[MN]A[PA]H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]A[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F} 8.9833;8.8426;7.9124;6.6499;5.5939;5.1535;4.5229;3.4535;2.7824;2.6987 +;+;-;-;-;-;-;-;-;- + 504 + NaN NaN 139099.2 NaN 4602 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6758 38.225 NaN 281400 35 0 75434 0.261 + 17694 MAQYIQYAI 9 43 550.7774078629201 NaN 0 550.7960205078125 PEAK HCD FTMS 0 0 0 6756 12931.9716796875 0.5804622258162053 -2 0.0498046875 2 Unmodified _MAQYIQYAI_ REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF 7.910154910731844 0.25691533546754686 1 A{I|L} 2 -1 10.969 0 0 0.99761 0 0 131.05788928586156 781.3378195454897 912.3957088313512 0 0 0 0 0 0 0 0 0 A{I|L} 0.99761 + + 20 + NaN NaN 125054.7 NaN 4603 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6759 38.229 NaN 188470 35 0 24278 0.261 -1 RQEYLKLEM 9 50 613.3159539454991 1224.6173549577982 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6756 111877.1171875 0.6628158811012274 7 -0.21728897094726562 3 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 14.838274106304384 0.23215694253501695 1 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 34.412 0 0 2.8101 0 0 542.2953968732437 0 542.2953968732437 0 3.214562785677657 0 0 0 0 0 0.8494850021680094 0 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8101 - 61 NaN NaN 112826.1 NaN 4604 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6760 38.232 NaN 271640 35 0 26150 0.262 -1 HPTGKMFIL 9 58 530.2863593624666 1058.558165791733 2 530.2864379882812 MULTI HCD FTMS 0 0 0 6756 124727.9453125 0.8504677014432807 -4 0.10290145874023438 4 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 1 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3736071399597 720.3736071399597 26.861818737241734 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 59 + NaN NaN 124639.5 NaN 4605 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6761 38.236 NaN 152120 35 0 29143 0.262 -1 0 41 416.22775484842754 415.22047838182755 1 416.2277526855469 MULTI HCD FTMS 0 0 0 6756 56633.98046875 0.1677555976544229 28 -0.769866943359375 5 NaN NaN 1 Y 1 -1 12.764 0 0 3.0741 0 0 234.1463034324119 0 234.1463034324119 0 12.764209843288903 0 0 0 0 0 0 0 Y 3.0741 - 3 + NaN NaN 103376.9 NaN 4606 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6762 38.239 NaN 124240 35 0 18006 0.261 + -1 RGTFVSAIDLM 11 41 409.21283914633733 1224.616688039212 3 409.21307373046875 MULTI HCD FTMS 0 0 0 6756 34724.18359375 0.5454638109976474 7 -0.21728897094726562 6 Oxidation (M) _RGTFVSAIDLM(Oxidation (M))_ REV__ENSG00000092421|ENST00000343348|SEMA6A;REV__nc|ENSG00000092421|Q9H2E6-2|SEMA6A 12.855947597645695 0.34506811884481176 1 E{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.4315 0 0 930.5279265252024 0 930.5279265252024 0 17.57007180900061 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F} 2.4315 - 11 NaN NaN 105109.4 NaN 4607 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6763 38.242 NaN 91808 35 0 8306.2 0.261 + -1 YVIMYMPLD 9 27 580.7719995076426 1159.529446082085 2 580.7559814453125 MULTI HCD FTMS 0 0 0 6756 9876.009765625 0.03876868910579961 26 -0.71728515625 7 Oxidation (M) _YVIM(Oxidation (M))YMPLD_ REV__tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1 7.910154910731844 0.2910521888787154 1 [YV]{I|L} 3 -1 22.465 0 0 1.9374 0 0 0 781.2890719049436 781.2890719049436 0.5018968230078258 0 0 0 0 0.3054621874040891 1.5228787452803376 0 0 [YV]{I|L} 1.9374 + + 33 + NaN NaN 94736.1 NaN 4608 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6764 38.246 NaN 138280 35 0 25959 0.261 -1 TATLHEPIM 9 44 514.7575535875692 1027.5005542419383 2 514.7574462890625 MULTI HCD FTMS 0 0 0 6756 31657.626953125 0.33292389938806943 12 -0.3632087707519531 8 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.1401 0 0 862.4547453813899 0 862.4547453813899 0 10.051499783199063 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.1401 + + 10 + NaN NaN 111344 NaN 4609 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6765 38.249 NaN 122400 35 0 59581 0.262 + 22127 QIKQDVLQKL 10 40 404.91492401809796 1211.7229426544939 3 404.91534423828125 MULTI HCD FTMS 0 0 0 6756 9373.7421875 0.5439623019810705 1 -0.039875030517578125 9 Unmodified _QIKQDVLQKL_ REV__ENSG00000132205|ENST00000254528|EMILIN2 1.7422754331352037 0.46608156381052757 1 {I|L} 1 -1 14.604 0 0 1.2052 0 0 1080.6285803271485 0 1080.6285803271485 0 9.119543704721593 0 0 0 0 0 0 0 {I|L} 1.2052 + + 6 + NaN NaN 114351 NaN 4610 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6766 38.252 NaN 35497 35 0 4432.5 0.261 -1 0 29 438.09701890135506 NaN 0 437.8634338378906 PEAK HCD FTMS 0 0 0 6756 7561.408203125 1 0 0 10 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89841.4 NaN 4611 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6767 38.256 NaN 64862 35 0 6103.9 0.261 + 20494 PCPVGHMPNL 10 33 532.7539840391079 1063.4934151450157 2 532.75390625 MULTI HCD FTMS 0 0 0 6756 19324.376953125 0.709863448186204 8 -0.2538108825683594 11 Unmodified _PCPVGHMPNL_ REV__ENSG00000197081|ENST00000356956|IGF2R 6.723162845929126 0.4397169348982109 1 [C(Carbamidomethyl (C))C]S 3 -1 8.9524 0 0 0.84179 0 0 0 710.3624361627561 710.3624361627561 2.385606273598313 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))C]S 0.84179 - 8 + NaN NaN 103086.1 NaN 4612 2153 6756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6769 38.261 NaN 354400 35 0 53902 0.327 + 21842 QAVKDYEL 8 71 483.25029728544854 964.4860416376971 2 483.2503662109375 MULTI HCD FTMS 0 0 0 6768 210905.15625 0.7396070911471564 -2 0.06315231323242188 1 Unmodified _QAVKDYEL_ ENSG00000118898|ENST00000345988|PPL 49.93300154707207 0.1281809856024636 1 [YE]DKV[QA]{I|L} 8 6 + 43.421 0 0 4.502 4.502 83.981 0 0 0 5.791812460476251 14.916440611282624 5.791812460476251 7.7815125038364386 0 0 1.2218487496163564 0.3807196863200844 0.5 [YE]DKV[QA]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EKV[QA]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[K{I|L}]{[QG]|[NA]}E{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[K{I|L}]D[QA]{I|L};[YT][Q{I|L}][QA]E{I|L};[QA]VKDYE{I|L};[YT][Q{I|L}]E[QA]{I|L};{[QN]|[E{I|L}]|[KN]}T{[QG]|[NA]}{[SA]|[TG]}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}T{[QG]|[NA]}{[SA]|[TG]}{I|L}{M(Oxidation (M))|F} 4.502;3.6952;3.0932;2.6054;2.321;2.1975;1.8332;1.6981;0.017313 -;-;-;-;-;+;-;-;- + 535 NaN NaN 135985.5 NaN 4613 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6770 38.265 NaN 221650 35 0 20962 0.261 + 3765 ENVEKIRNQV 10 56 410.226012824407 1227.656209073421 3 410.2261962890625 MULTI HCD FTMS 0 0 0 6768 65464.05078125 0.8961911069000653 1 -0.0299072265625 2 Unmodified _ENVEKIRNQV_ REV__ENSG00000197323|ENST00000358465|TRIM33;REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33 2.843284757254958 0.46025374642504374 1 {NN|[MP]|[D{I|L}]|[EV]}NE 4 -1 16.198 0 0 1.3194 0 0 0 753.4364591008414 753.4364591008414 0.7133375178436552 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}NE 1.3194 - 17 + NaN NaN 117192.6 NaN 4614 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6771 38.269 NaN 161360 35 0 27801 0.261 -1 NLPQHPDVEM 10 38 598.2736986617595 1194.5328443903188 2 598.2742919921875 MULTI HCD FTMS 0 0 0 6768 52021.4765625 0.7537848296188494 1 -0.0299072265625 3 Oxidation (M) _NLPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 14.405379775768559 0.37636895476610294 1 {[QV]|[N{I|L}]|[RA]|[KV]}[QP]H 5 -1 30.726 0 0 2.5722 0 0 0 602.2127169244749 602.2127169244749 9.756499699645858 0 0 0 0 0.4247425010840047 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}[QP]H 2.5722 + + 13 + NaN NaN 103801.9 NaN 4615 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6772 38.272 NaN 281950 35 0 112040 0.264 + 24950 RYTERVDYL 9 45 405.5434720144367 1213.60858664351 3 405.5435791015625 MULTI HCD FTMS 0 0 0 6768 78061.78125 0.4619816829418998 -2 0.06315231323242188 4 Unmodified _RYTERVDYL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 6.1918466704503565 0.30407824485930035 1 VC(Carbamidomethyl (C))C(Carbamidomethyl (C))Y{I|L} 5 7 32.218 0 0 2.6548 0 0 500.3324146955094 0 500.3324146955094 0 17.614393726401687 0 0 0 1 0 0 0 VC(Carbamidomethyl (C))C(Carbamidomethyl (C))Y{I|L} 2.6548 - 12 NaN NaN 129632.4 NaN 4616 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6773 38.276 NaN 114620 35 0 15578 0.261 + -1 IPVWVLGCV 9 33 521.7922703584154 1041.5699877836307 2 522.2760620117188 MULTI HCD FTMS 0 0 0 6768 8861.6162109375 0.2564445350037954 -4 0.11621475219726562 5 Carbamidomethyl (C) _IPVWVLGC(Carbamidomethyl (C))V_ REV__ENSG00000233670|ENST00000580256|PIRT 9.347437153973935 0.2795965555214564 1 {I|L}PVC 4 -1 36.37 0 0 3.4919 0 0 0 626.3262423150999 626.3262423150999 29.38039076304328 0 0 0 0 0.3182503180159344 1.6989700043360187 0 0 {I|L}PVC 3.4919 - 9 + NaN NaN 97292 NaN 4617 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6774 38.279 NaN 33640 35 0 5128.1 0.261 -1 FMTRYMDY 8 27 571.7371048037752 1141.4596566743503 2 571.7376098632812 MULTI HCD FTMS 0 0 0 6768 13108.068359375 0.7260412000216796 1 -0.0299072265625 6 Oxidation (M) _FM(Oxidation (M))TRYMDY_ GRID2|p.T537M|1|0.2|ENSG00000152208|chr4:93455726-93455726|C/T|missense_variant 7.289230182591677 0.5311777711368266 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90617.8 NaN 4618 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6775 38.282 NaN 21732 35 0 3264.1 0.261 + -1 KMEMNKYSN 9 16 588.7547324169923 1175.4949119007845 2 588.75390625 MULTI HCD FTMS 0 0 0 6768 6484.45654296875 0.4249571848220514 7 -0.21393585205078125 7 2 Oxidation (M) _KM(Oxidation (M))EM(Oxidation (M))NKYSN_ REV__ENST00000409171.5_1_2:228356327-228384685:+|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81051.1 NaN 4619 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6776 38.285 NaN 14160 35 0 4185.9 0.261 -1 TLLRWFHDC 9 13 624.3031499317834 1246.5917469303668 2 624.3036499023438 MULTI HCD FTMS 0 0 0 6768 10076.34375 0.4713948865811634 4 -0.1161956787109375 8 Carbamidomethyl (C) _TLLRWFHDC(Carbamidomethyl (C))_ ENSG00000186603|ENST00000334815|HPDL;HPDL|p.I312Sfs*3|1|0.23|ENSG00000186603|chr1:45328078-45328078|G/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 C(Carbamidomethyl (C)) 1 -1 14.604 0 0 1.1715 0 0 1068.547814900873 0 1068.547814900873 0 14.604093769761874 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 1.1715 + + 3 + NaN NaN 96601.9 NaN 4620 2154 6768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6778 38.291 NaN 167170 35 0 19738 0.327 -1 CYKKVVMV 8 40 493.2634668947007 984.5123808562014 2 494.2500915527344 MULTI HCD FTMS 0 0 0 6777 2721.3955078125 0.38151685694759024 2 -0.059741973876953125 1 Oxidation (M) _CYKKVVM(Oxidation (M))V_ chr13:37569353-37569744|106|36.28|0.34|6.74|-|0|None,POSTN|2 2.8892196856762586 0.5377058178582064 1 {I|L}R 2 -1 17.959 0 0 1.8241 0 0 697.321580955275 0 697.321580955275 0 -0.7834093268442679 -0.7834093268442679 0 0 0 0 0 0 {I|L}R 1.8241 - 39 NaN NaN 106864.5 NaN 4621 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6779 38.295 NaN 141040 35 0 29072 0.261 + 19608 NTVDEVYVSR 10 39 591.2934643916728 1180.5723758501456 2 591.2935791015625 MULTI HCD FTMS 0 0 0 6777 76670.65625 0.30471121958707653 4 -0.12765121459960938 2 Unmodified _NTVDEVYVSR_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 66.54955139489424 0.02167381291790446 1 {[QS]|[NT]}VDEVYV{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 84.799 0 0 7.1828 7.1828 95.65 0 0 0 74.34115329172698 5.764837301042718 5.764837301042718 84.79872819733373 0 2.416386562212267 1.5228787452803376 0 0 + + {[QS]|[NT]}VDEVYV{[QD]|[EN]|[WG]|[KD]|[RS]} 7.1828 + + 125 + NaN NaN 120810.3 NaN 4622 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6780 38.299 NaN 158810 35 0 12471 0.262 + 9173 HPKFQTLE 8 50 500.26655880682017 998.5185646804404 2 500.2825927734375 MULTI HCD FTMS 0 0 0 6777 22587.923828125 0.45674899458102575 8 -0.23705673217773438 3 Unmodified _HPKFQTLE_ ENSG00000081386|ENST00000223428|ZNF510 7.289230182591677 0.5311777711368266 1 YE{M(Oxidation (M))|F} 3 7 20.718 0 0 2.0749 0 0 541.3678516450873 0 541.3678516450873 0 3.2834093268442643 0 0 0 0 0 0.3807196863200844 0 YE{M(Oxidation (M))|F} 2.0749 - 37 + NaN NaN 104518.7 NaN 4623 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6781 38.302 NaN 293790 35 0 71226 0.261 + 10675 IPVNEKDTL 9 55 514.7844881697932 1027.5544234063864 2 514.7844848632812 MULTI HCD FTMS 0 0 0 6777 127254.78125 0.5402191440262724 -3 0.09305953979492188 4 Unmodified _IPVNEKDTL_ ENSG00000164105|ENST00000296504|SAP30 61.08992128646608 0.016056751534446034 1 {I|L}PVNE 5 4 71.771 0 0 6.9847 0 0 0 472.24094568424067 472.24094568424067 38.82190971075161 0 0 0 0 1.5 1.2218487496163564 1.110924374808178 0 + {I|L}PVNE 6.9847 + + 213 + NaN NaN 137242.8 NaN 4624 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6782 38.305 NaN 22696 35 0 5363 0.261 + 5360 FGDRNQDIMNF 11 19 452.8700422802619 NaN 0 452.8695983886719 PEAK HCD FTMS 0 0 0 6777 8186.37060546875 0.4215125084399613 21 -0.5714149475097656 5 Unmodified _FGDRNQDIMNF_ REV__ENSG00000101335|ENST00000279022|MYL9;REV__ENSG00000101608|ENST00000217652|MYL12A;REV__ENSG00000118680|ENST00000237500|MYL12B;REV__ENST00000577510.5_1_18:3252320-3253446:+|nuORF;REV__ENST00000580353.1_1_18:3247898-3253446:+|nuORF;REV__nc|ENSG00000101335|P24844-2|MYL9 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85466.6 NaN 4625 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6783 38.309 NaN 39142 35 0 8011.8 0.261 + 3821 EPERFLHQ 8 23 528.2663967697915 1054.518240606383 2 528.7689208984375 MULTI HCD FTMS 0 0 0 6777 6084.2119140625 0.43246751669154593 1 -0.026538848876953125 6 Unmodified _EPERFLHQ_ REV__ENSG00000118705|ENST00000237530|RPN2;REV__nc|ENSG00000118705|P04844-2|RPN2 2.0597508629832335 0.5389364538378849 1 W[HQ] 3 -1 7.4473 0 0 0.70623 0 0 585.32328993965 0 585.32328993965 0 0.45757490560674974 0 0 0 0 0 0 0 W[HQ] 0.70623 - 5 NaN NaN 84518 NaN 4626 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6784 38.312 NaN 17396 35 0 2964.6 0.261 -1 YRSRMRRE 8 20 585.3008627285342 1168.5871725238683 2 585.3002319335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _YRSRM(Oxidation (M))RRE_ BCL2L13-CUX2|1|fusion;ENSG00000111249|ENST00000261726|CUX2 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90000.2 NaN 4627 2155 6777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6786 38.317 NaN 542240 35 0 34967 0.327 + 21730 QADSLERSL 9 73 509.76165557772026 1017.5087582222405 2 509.76171875 MULTI HCD FTMS 0 0 0 6785 309141.1875 0.6692188375103089 2 -0.059749603271484375 1 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 125.0377797344192 0.0009059125702818869 1 [QA]DS{I|L}ERS{I|L} 9 0 + 73.777 0 0 7.2507 7.2507 92.777 0 0 0 7.147642715192504 16.262874945799766 7.147642715192504 16.262874945799766 0 1.7544321917401078 0 1.6505149978319906 0.2614393726401688 + + [QA]DS{I|L}ERS{I|L};[QA]DS{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]DS{I|L}{I|L}S{[RE]|[WV]};[QA]DS{I|L}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]E[VS]ERS{I|L};{[RE]|[WV]}SP{[CA]|SS}[VG]S{I|L};[QA]D[R{I|L}]{[ES]|[DT]|[{I|L}C]}S{I|L};[QA]E[VS]E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[TV]|[{I|L}S]}[DG]P{[CA]|SS}RS{I|L};{[DS]|[MA]|[CV]|TT}{[VA]|[{I|L}G]}P{[CA]|SS}RS{I|L} 7.2507;5.6524;4.2426;4.1618;4.1474;3.0618;3.0149;2.5491;2.3606;2.1097 +;-;-;-;-;-;-;-;-;- + 538 + NaN NaN 175884.5 NaN 4628 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6787 38.322 NaN 327030 35 0 85989 0.261 -1 0 63 425.7747160151717 849.5348790971434 2 425.7747802734375 MULTI HCD FTMS 0 0 0 6785 149274.265625 0.8200343050287519 -2 0.056446075439453125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.5025 0 0 684.4560044406966 0 684.4560044406966 0 12.279659778248622 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5025 - 8 + NaN NaN 132791.7 NaN 4629 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6788 38.325 NaN 110240 35 0 41369 0.261 + 24952 RYTERVDYL 9 30 607.8116269947267 1213.6087010562533 2 607.8118896484375 MULTI HCD FTMS 0 0 0 6785 51798.14453125 0.920501701393929 1 -0.033203125 3 Unmodified _RYTERVDYL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 6.1918466704503565 0.30407824485930035 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[KC]{M(Oxidation (M))|F} 5 8 5.3297 0 0 0.43916 0 0 0 538.2334078424436 538.2334078424436 1.8348435778081997 0 0 0 0 0 0 0 0.4247425010840047 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[KC]{M(Oxidation (M))|F} 0.43916 - 12 + NaN NaN 94062.8 NaN 4630 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6789 38.329 NaN 79251 35 0 8252.9 0.261 -1 LHYECIVLV 9 26 573.3062893413309 1144.5980257494616 2 574.291015625 MULTI HCD FTMS 0 0 0 6785 4654.11279296875 0.4693914344592443 -1 0.026538848876953125 4 Carbamidomethyl (C) _LHYEC(Carbamidomethyl (C))IVLV_ ENSG00000165609|ENST00000491614|NUDT5;ENST00000378952.7_1_10:12209703-12222485:-|nuORF 7.910154910731844 0.2910521888787154 1 TV 2 -1 14.464 0 0 1.2637 0 0 129.1271254829698 812.3329144071969 941.4600398901666 0 0 0 0 0 0 0 0.5 0 TV 1.2637 - 11 + NaN NaN 97634.8 NaN 4631 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6790 38.332 NaN 96988 35 0 7064.3 0.262 + 21863 QAVREYTL 8 39 490.2640701640625 978.513587394925 2 490.2641296386719 MULTI HCD FTMS 0 0 0 6785 36681.98828125 1 0 0 5 Unmodified _QAVREYTL_ ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 7.289230182591677 0.5311777711368266 1 EE[HQ]T{I|L} 6 6 11.528 0 0 1.1781 0 0 223.18370565840002 0 223.18370565840002 0 2.5481810956518576 0 0 0 0.4247425010840047 0 0 0 EE[HQ]T{I|L} 1.1781 - 21 + NaN NaN 90119.5 NaN 4632 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6791 38.335 NaN 69222 35 0 27606 0.261 + -1 IAFMESRTN 9 22 542.7574390166177 1083.5003251000353 2 542.7568969726562 MULTI HCD FTMS 0 0 0 6785 16212.837890625 0.9746161049700535 1 -0.033203125 6 Oxidation (M) _IAFM(Oxidation (M))ESRTN_ REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;REV__FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;REV__FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;REV__FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;REV__FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;REV__FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;REV__FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;REV__FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;REV__FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97517.3 NaN 4633 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6792 38.339 NaN 33237 35 0 4574.4 0.262 + 3473 EGHAPAESI 9 25 455.7166557201502 909.4187585071004 2 455.71728515625 MULTI HCD FTMS 0 0 0 6785 13593.078125 0.05535732693617049 12 -0.35971832275390625 7 Unmodified _EGHAPAESI_ REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF 6.723162845929126 0.3000504726104499 1 S{I|L} 2 -1 23.711 0 0 2.6073 0 0 691.292284080275 0 691.292284080275 0 23.711375162600703 0 0 0 0.4247425010840047 0 0 0 S{I|L} 2.6073 + + 4 NaN NaN 95026.2 NaN 4634 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6793 38.342 NaN 42456 35 0 4301.3 0.261 + -1 LAHEMCDTV 9 27 546.2277433195646 1090.4409337059292 2 546.2291259765625 MULTI HCD FTMS 0 0 0 6785 8720.8173828125 0.8443139509564969 1 -0.033203125 8 Carbamidomethyl (C),Oxidation (M) _LAHEM(Oxidation (M))C(Carbamidomethyl (C))DTV_ REV__ENSG00000025423|ENST00000322165|HSD17B6 3.944395688203298 0.32111559684428237 1 TV 2 -1 25.969 0 0 2.3815 0 0 872.314781062175 0 872.314781062175 0 25.969100130080562 0 0 0 0.5 0 0 0 TV 2.3815 + + 2 NaN NaN 87515.4 NaN 4635 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6794 38.345 NaN 49175 35 0 8517 0.261 + 32522 WGRGGRHL 8 31 469.75627729801136 937.4980016628227 2 469.7554016113281 MULTI HCD FTMS 0 0 0 6785 3139.725341796875 0.22680251557685965 2 -0.059749603271484375 9 Unmodified _WGRGGRHL_ ENSG00000101203|ENST00000358894|COL20A1;ENST00000471582.5_1_20:61956720-61961007:+|nuORF;ENST00000479501.5_1_20:61950534-61961007:+|nuORF;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98699.6 NaN 4636 2156 6785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6796 38.35 NaN 83081 35 0 11688 0.327 + 7361 FVDTQDRSL 9 36 540.7694137225732 1079.5242745119463 2 540.77001953125 MULTI HCD FTMS 0 0 0 6795 26865.306640625 0.7418345565076324 -1 0.033203125 1 Unmodified _FVDTQDRSL_ ENSG00000198585|ENST00000521288|NUDT16;nc|ENSG00000198585|Q96DE0-2|NUDT16;nc|ENSG00000198585|Q96DE0-3|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16 29.84058131909904 0.11198220037953927 1 [{M(Oxidation (M))|F}V]DTQ 5 4 49.124 0 0 4.5505 0 0 0 486.23188196353755 486.23188196353755 43.18205088429579 0 0 0 0 1.3494850021680094 1.154901959985743 0.4247425010840047 0 + [{M(Oxidation (M))|F}V]DTQ 4.5505 + + 86 + NaN NaN 87922.5 NaN 4637 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6797 38.355 NaN 65356 35 0 10791 0.261 -1 YVHMVTHF 8 36 525.247264992183 1048.4799770511659 2 525.2474365234375 MULTI HCD FTMS 0 0 0 6795 10194.8193359375 0.08318644054074695 47 -1.2362785339355469 2 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 10.183394434864962 0.5188676124868831 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4769 0 0 883.4338324972581 0 883.4338324972581 0 11.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4769 + + 3 + NaN NaN 87033 NaN 4638 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6798 38.358 NaN 62578 35 0 5980.6 0.261 + 27618 TAISENYQTM 10 37 587.257930581979 1172.501308230758 2 587.2581176757812 MULTI HCD FTMS 0 0 0 6795 22480.822265625 0.43879574230720436 -3 0.08964920043945312 3 Oxidation (M) _TAISENYQTM(Oxidation (M))_ ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000565906.2_1_15:89532752-89533049:-|nuORF 49.74193281347159 0.07872806610313077 1 NYQT{M(Oxidation (M))|F} 5 5 49.909 0 0 4.2566 0 0 501.24336440254064 0 501.24336440254064 0 39.45168783987789 0 0 0 1.9247425010840047 0 0 0.3494850021680094 + NYQT{M(Oxidation (M))|F} 4.2566 + + 96 NaN NaN 94288.1 NaN 4639 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6799 38.362 NaN 130060 35 0 16502 0.261 + 27698 TANQDGRVIL 10 37 543.7986321218036 1085.5827113104071 2 543.79833984375 MULTI HCD FTMS 0 0 0 6795 26988.06640625 0.15454529633653374 -5 0.152801513671875 4 Unmodified _TANQDGRVIL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 20.580933911654288 0.31860490502175054 1 V{I|L}{I|L} 3 7 29.693 0 0 2.7352 0 0 742.3385487287125 0 742.3385487287125 0 20.228787452803374 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 2.7352 + + 18 NaN NaN 100455.7 NaN 4640 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6800 38.365 NaN 19924 35 0 4787.7 0.261 + -1 EMLCILDFF 9 14 602.2771905527773 1202.5398281723544 2 602.2764892578125 MULTI HCD FTMS 0 0 0 6795 8193.728515625 0.31114212420916354 12 -0.3563385009765625 5 Carbamidomethyl (C),Oxidation (M) _EM(Oxidation (M))LC(Carbamidomethyl (C))ILDFF_ REV__ENSG00000132300|ENST00000254630|PTCD3;REV__ENST00000469585.5_1_2:86355098-86362111:+|nuORF;REV__ENST00000487043.5_1_2:86355098-86363686:+|nuORF;REV__ENST00000493430.5_1_2:86358220-86360412:+|nuORF;REV__nc|ENSG00000132300|Q96EY7-2|PTCD3 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85240.1 NaN 4641 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6801 38.368 NaN 29208 35 0 5531.2 0.261 + 30769 VPPDYEDEF 9 13 555.7345023579659 1109.4544517827317 2 555.7349243164062 MULTI HCD FTMS 0 0 0 6795 15553.857421875 0.08727944652671515 47 -1.2362785339355469 6 Unmodified _VPPDYEDEF_ ENSG00000121764|ENST00000403528|HCRTR1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91223.9 NaN 4642 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6802 38.372 NaN 13188 35 0 4406.9 0.261 + 22144 QKEFYGEYVL 10 11 638.3180541992188 NaN 0 638.3180541992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _QKEFYGEYVL_ ENSG00000166261|ENST00000530393|ZNF202;nc|ENSG00000166261|O95125-2|ZNF202 1.1933415558491238 0.33916295405077446 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83532 NaN 4643 2157 6795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6804 38.377 NaN 1476900 35 0 132130 0.327 + 196 AETVRYSMCT 10 104 580.756873986535 1159.4991950398698 2 580.7574462890625 MULTI HCD FTMS 0 0 0 6803 782607.3125 0.4773903186013802 -2 0.059749603271484375 1 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 22.736283301280096 0.29844449404982915 1 {I|L}STGE{I|L}{[MG]|[TS]}{I|L} 9 8 65.377 0 0 5.6384 0 0 240.02348525215 0 240.02348525215 0 23.966889578195833 0 0 0 2.774227503252014 0 1.4436726795685342 0 {I|L}STGE{I|L}{[MG]|[TS]}{I|L} 5.6384 - 1680 NaN NaN 305103 NaN 4644 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6805 38.381 NaN 323750 35 0 28854 0.261 + -1 IFMKGTPHI 9 57 530.2863593624666 1058.558165791733 2 530.2864379882812 MULTI HCD FTMS 0 0 0 6803 132272.703125 0.9019122499658005 1 -0.041362762451171875 2 Oxidation (M) _IFM(Oxidation (M))KGTPHI_ REV__ENSG00000106399|ENST00000223129|RPA3;REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF;REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF 22.736283301280096 0.1639198954644489 1 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3775499777233 720.3775499777233 -3.3648752958484422 0 -3.3648752958484422 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 - 109 + NaN NaN 135426 NaN 4645 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6806 38.385 NaN 283810 35 0 33174 0.261 + 1538 AYVHMVTHF 9 50 560.7657570063983 1119.5169610795965 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6803 112858.7265625 0.11496675701920413 48 -1.2724113464355469 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 97.07464715276575 0.004340583992084827 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 99.435 0 0 8.8819 8.8819 94.445 0 0 0 12.346368802282015 16.478174818886373 12.346368802282015 12.346368802282015 0 2.9247425010840047 1.6989700043360187 0.7614393726401688 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 8.8819;7.7791;5.334;3.7617 +;-;-;- + 422 NaN NaN 131650.2 NaN 4646 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6807 38.388 NaN 122660 35 0 15266 0.261 -1 HPVLKEMEVQ 10 34 613.3159539454991 1224.6173549577982 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6803 76165.9375 0.45124502885925344 12 -0.3529815673828125 4 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4166353815061 888.4166353815061 16.42159058960253 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 10 + NaN NaN 96635.3 NaN 4647 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6808 38.392 NaN 167500 35 0 35355 0.261 + 17695 MAQYIQYAI 9 51 550.7774078629201 NaN 0 550.7957763671875 PEAK HCD FTMS 0 0 0 6803 14249.2744140625 0.6395904466481553 3 -0.09774017333984375 5 Unmodified _MAQYIQYAI_ REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF 4.3292370932331545 0.2742679634796037 1 A{I|L} 2 -1 10.969 0 0 0.99761 0 0 131.05726304359195 781.3390596979124 912.3963227415043 0 0 0 0 0 0 0 0 0 A{I|L} 0.99761 + + 8 + NaN NaN 116481.5 NaN 4648 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6809 38.395 NaN 250870 35 0 45985 0.261 + 10679 IPVNEKETL 9 44 521.7922703584154 1041.5699877836307 2 521.7925415039062 MULTI HCD FTMS 0 0 0 6803 58561.16796875 1 0 0 6 Unmodified _IPVNEKETL_ ENSG00000164576|ENST00000297109|SAP30L;ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L 22.65808497894818 0.16459551161911185 1 {I|L}PVNDC 6 5 61.732 0 0 5.9268 0 0 0 397.2789705865844 397.2789705865844 47.1277502416482 0 0 0 0 0.5 1.5228787452803376 0.4247425010840047 0 {I|L}PVNDC 5.9268 - 44 + NaN NaN 117867 NaN 4649 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6810 38.398 NaN 128410 35 0 22243 0.261 -1 SSGPVDPMM 9 39 476.69134176815527 951.3681306031106 2 476.6910705566406 MULTI HCD FTMS 0 0 0 6803 24642.603515625 0.36139278924597906 15 -0.415740966796875 7 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 1 D[YV]{M(Oxidation (M))|F} 4 -1 19.169 0 0 2.0149 0 0 409.13568022802593 0 409.13568022802593 0 13.68440000316717 0 0 0 0.9247425010840047 0 0 0 D[YV]{M(Oxidation (M))|F} 2.0149 - 10 + NaN NaN 106581.8 NaN 4650 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6811 38.402 NaN 134540 35 0 12808 0.261 + 9299 HPPRHQDDT 9 65 551.7545627920932 1101.4945726509864 2 551.7557373046875 MULTI HCD FTMS 0 0 0 6803 31278.89453125 0.29559132647294234 13 -0.37945556640625 8 Unmodified _HPPRHQDDT_ ENST00000586392.1_1_19:34887279-34887507:+|nuORF 14.838274106304384 0.23215694253501695 1 MSMQVE 6 8 38.062 0 0 3.4555 0 0 0 393.18845544986567 393.18845544986567 21.86456156697153 0 0 0 0 1.3851518780601921 0 0.28872548999643577 0 MSMQVE 3.4555 - 134 + NaN NaN 100454.1 NaN 4651 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6812 38.406 NaN 57460 35 0 7980.4 0.261 + 14346 LDVLPDARP 9 28 498.27966478682026 994.5447766404405 2 498.2796936035156 MULTI HCD FTMS 0 0 0 6803 24117.455078125 0.5836517038961864 4 -0.1276092529296875 9 Unmodified _LDVLPDARP_ ENSG00000106608|ENST00000453200|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP 9.38312468134398 0.279288223203164 1 VA[RP] 4 5 16.198 0 0 1.6287 0 0 553.2747398746187 0 553.2747398746187 0 0.7403126772771866 0 0 0 0 0 0 0 VA[RP] 1.6287 - 41 + NaN NaN 93163.3 NaN 4652 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6813 38.41 NaN 201860 35 0 17470 0.261 + 27619 TAISENYQTM 10 62 587.257930581979 1172.501308230758 2 587.7469482421875 MULTI HCD FTMS 0 0 0 6803 15755.3388671875 0.4983239465941179 -1 0.026546478271484375 10 Oxidation (M) _TAISENYQTM(Oxidation (M))_ ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000565906.2_1_15:89532752-89533049:-|nuORF 51.487983226225225 0.0723780666322865 1 HSENYQ[{M(Oxidation (M))|F}T] 8 3 44.435 0 0 3.7898 0 0 148.12638903737349 0 148.12638903737349 0 13.544256385165951 0 0 0 2.278659694992122 0 1.1549471895720984 0 HSENYQ[{M(Oxidation (M))|F}T] 3.7898 - 245 + NaN NaN 118387.4 NaN 4653 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6814 38.413 NaN 39305 35 0 7662 0.263 + -1 HGACSHDE 8 35 456.666844266215 911.31913559923 2 456.66705322265625 MULTI HCD FTMS 0 0 0 6803 15244.4990234375 0.5513700570359664 1 -0.041362762451171875 11 Carbamidomethyl (C) _HGAC(Carbamidomethyl (C))SHDE_ REV__ENST00000456943.6_1_6:2272473-2272845:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87608.2 NaN 4654 2158 6803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6816 38.418 NaN 178960 35 0 27672 0.327 + 21843 QAVKDYEL 8 52 483.25029728544854 964.4860416376971 2 483.2503967285156 MULTI HCD FTMS 0 0 0 6815 114373.671875 0.40108824394514103 3 -0.08624649047851562 1 Unmodified _QAVKDYEL_ ENSG00000118898|ENST00000345988|PPL 25.399314129420986 0.40691472774782006 1 E[QA]{I|L} 4 6 21.995 0 0 2.2805 0 0 505.264452049025 0 505.264452049025 0 12.060997120194797 0 0 0 0 0 0.3807196863200844 0.5 E[QA]{I|L} 2.2805 - 142 NaN NaN 104061.4 NaN 4655 2159 6815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6817 38.423 NaN 179130 35 0 38827 0.261 -1 0 42 448.7268004981133 895.4390480630266 2 449.21881103515625 MULTI HCD FTMS 0 0 0 6815 20885.021484375 0.6601368472292403 -3 0.10111236572265625 2 NaN NaN 1 {I|L}M 2 -1 5.5732 0 0 0.6224 0 0 116.09393698488539 532.2144259088499 648.3083628937353 0 0 0 0 0 0 0 0 0 {I|L}M 0.6224 - 20 + NaN NaN 106580.1 NaN 4656 2159 6815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6818 38.426 NaN 86276 35 0 10747 0.261 + -1 METFTRIQAL 10 44 409.21283914633733 1224.616688039212 3 409.2127990722656 MULTI HCD FTMS 0 0 0 6815 25463.9921875 0.4000003681672756 13 -0.35457611083984375 3 Oxidation (M) _M(Oxidation (M))ETFTRIQAL_ REV__ENSG00000095139|ENST00000264028|ARCN1;REV__nc|ENSG00000095139|P48444-2|ARCN1 3.3196427980023873 0.4577323075863651 1 E{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1206 0 0 930.5298244178356 0 930.5298244178356 0 20.48455006504028 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.1206 - 8 NaN NaN 105849.6 NaN 4657 2159 6815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6819 38.43 NaN 93439 35 0 18874 0.261 -1 SSGPVDPMM 9 29 476.69134176815527 951.3681306031106 2 477.1940612792969 MULTI HCD FTMS 0 0 0 6815 14067.3251953125 0.3651423333433375 5 -0.13593292236328125 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 1 D[YV]{M(Oxidation (M))|F} 4 -1 23.94 0 0 2.5164 0 0 409.13481908665057 0 409.13481908665057 0 16.95046257204389 0 0 0 0.9247425010840047 0 0 0 D[YV]{M(Oxidation (M))|F} 2.5164 - 10 + NaN NaN 93911.5 NaN 4658 2159 6815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6820 38.433 NaN 56035 35 0 5303.9 0.261 -1 RWCLDMAL 8 32 532.7539840391079 1063.4934151450157 2 532.7533569335938 MULTI HCD FTMS 0 0 0 6815 21030.353515625 0.7725309488315617 14 -0.3743782043457031 5 Carbamidomethyl (C) _RWC(Carbamidomethyl (C))LDMAL_ ENSG00000177728|ENST00000314256|TMEM94;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant;nc|ENSG00000177728|Q12767-2|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94 4.3292370932331545 0.5355693454741696 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2689 0 0 898.4480487893501 0 898.4480487893501 0 8.89075625191822 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2689 + + 4 + NaN NaN 96448.9 NaN 4659 2159 6815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6822 38.438 NaN 384550 35 0 102510 0.327 + 10676 IPVNEKDTL 9 73 514.7844881697932 1027.5544234063864 2 514.7847900390625 MULTI HCD FTMS 0 0 0 6821 198507.015625 0.842697531760893 2 -0.0663909912109375 1 Unmodified _IPVNEKDTL_ ENSG00000164105|ENST00000296504|SAP30 96.93554129104106 0.004344229100022454 1 {I|L}PVNE 5 4 85.305 0 0 8.3018 0 0 0 472.2413729303344 472.2413729303344 56.250612633917 0 0 0 0 1.4247425010840047 1.6989700043360187 1.4361818737241734 0.3252574989159953 + {I|L}PVNE 8.3018 + + 350 + NaN NaN 140294.4 NaN 4660 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6823 38.443 NaN 338380 35 0 104050 0.262 + 24951 RYTERVDYL 9 53 405.5434720144367 1213.60858664351 3 405.54351806640625 MULTI HCD FTMS 0 0 0 6821 75152.203125 0.4447623500325776 4 -0.11607742309570312 2 Unmodified _RYTERVDYL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 12.872603262515298 0.2491399024913319 1 Y{I|L} 2 7 30.217 0 0 2.4898 0 0 919.4493720550644 0 919.4493720550644 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 + Y{I|L} 2.4898 + + 8 NaN NaN 127976.9 NaN 4661 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6824 38.446 NaN 122850 35 0 31545 0.261 -1 MQDLPPASSSC 11 36 596.7517223768928 1191.4888918205854 2 596.752197265625 MULTI HCD FTMS 0 0 0 6821 59404.25390625 0.9764903713131803 -1 0.019855499267578125 3 Carbamidomethyl (C) _MQDLPPASSSC(Carbamidomethyl (C))_ ENSG00000198912|ENST00000361605|C1orf174;ENST00000486765.5_1_1:3806526-3811957:-|nuORF 4.5288652416199255 0.3990586020344083 1 SG[CS] 4 -1 18.94 0 0 1.5896 0 0 839.3867697908596 0 839.3867697908596 0 10.713337517843655 0 0 0 0.4247425010840047 0 0 0 SG[CS] 1.5896 - 39 + NaN NaN 103628.5 NaN 4662 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6825 38.45 NaN 245130 35 0 97440 0.262 + 8873 HNEAPQALL 9 30 496.76143455133644 991.5083161694729 2 496.7613525390625 MULTI HCD FTMS 0 0 0 6821 82952.953125 0.3126196616210491 -5 0.1475067138671875 4 Unmodified _HNEAPQALL_ REV__ENSG00000144406|ENST00000673920|UNC80;REV__nc|ENSG00000144406|Q8N2C7-4|UNC80;REV__nc|ENSG00000144406|Q8N2C7-5|UNC80;REV__nc|ENSG00000144406|Q8N2C7-6|UNC80;REV__nc|ENSG00000144406|Q8N2C7-7|UNC80;REV__nc|ENSG00000144406|Q8N2C7|UNC80 12.240655878213236 0.2545997876781172 1 A{I|L}{I|L} 3 -1 35.445 0 0 3.5749 0 0 676.291795799025 0 676.291795799025 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 A{I|L}{I|L} 3.5749 + + 9 NaN NaN 126622.3 NaN 4663 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6826 38.453 NaN 104710 35 0 21785 0.261 + -1 SWMSTYWT 8 30 539.2200102705513 1076.4254676079024 2 539.2202758789062 MULTI HCD FTMS 0 0 0 6821 19250.630859375 0.639051773167915 -2 0.06121826171875 5 Oxidation (M) _SWM(Oxidation (M))STYWT_ REV__ENST00000244670.12_1_6:42988531-42988804:+|nuORF 5.230669730166228 0.5342319408533849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98246.2 NaN 4664 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6827 38.456 NaN 35124 35 0 7690.8 0.261 + -1 VKQLLSTD 8 23 473.26614763958423 944.5177423459685 2 474.255615234375 MULTI HCD FTMS 0 0 0 6821 3009.138671875 0.7434169344984877 -2 0.06121826171875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VKQLLSTD_ REV__ENST00000372390.8_1_X:106957403-106957457:-|nuORF 0.6014990680409731 0.5410999795511968 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.42132 0 0 545.5344792617873 248.8961580865844 794.4306373483716 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.42132 - 1 + NaN NaN 101531.5 NaN 4665 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6828 38.46 NaN 90681 35 0 24712 0.261 + 30971 VRTFSESL 8 27 469.7504594599557 937.4863659867115 2 469.7502136230469 MULTI HCD FTMS 0 0 0 6821 16526.0234375 0.3815219333119246 -3 0.08776473999023438 7 Unmodified _VRTFSESL_ ENSG00000185842|ENST00000682510|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-2|DNAH14;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 4.75600775471527 0.5349361699807423 1 V{I|L} 2 6 20.969 0 0 2.2367 0 0 707.324022361525 0 707.324022361525 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.2367 - 2 NaN NaN 104553.5 NaN 4666 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6829 38.463 NaN 37622 35 0 5794.9 0.261 -1 HATFNDPVM 9 21 524.2316991048964 1046.4488452765927 2 524.2322387695312 MULTI HCD FTMS 0 0 0 6821 13245.345703125 0.24482944582963528 19 -0.4999961853027344 8 Oxidation (M) _HATFNDPVM(Oxidation (M))_ ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.1014 0 0 881.4029448633099 0 881.4029448633099 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.1014 + + 2 + NaN NaN 89643.6 NaN 4667 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6830 38.466 NaN 41584 35 0 5017.7 0.261 + 33150 YEKNKNYF 8 26 553.2676947568413 NaN 0 553.2692260742188 PEAK HCD FTMS 0 0 0 6821 6441.7021484375 0.3419562732874433 -21 0.6089134216308594 9 Unmodified _YEKNKNYF_ nc|ENSG00000100678|P57103-7|SLC8A3 2.0597508629832335 0.38822285293237185 1 G 1 8 3.9794 0 0 0.36028 0 0 569.7973391213012 474.6840914361938 1044.481430557495 0 0 0 0 0 0 0 0 0 G 0.36028 - 1 + NaN NaN 89595.1 NaN 4668 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6831 38.469 NaN 16609 35 0 4046.1 0.261 + -1 KLECLFHCF 9 17 627.2945556640625 NaN 0 627.2945556640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Carbamidomethyl (C) _KLEC(Carbamidomethyl (C))LFHC(Carbamidomethyl (C))F_ REV__ENST00000194530.7_1_2:202319523-202319559:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89300.6 NaN 4669 2160 6821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6833 38.475 NaN 209150 35 0 55336 0.327 -1 0 43 425.7747160151717 849.5348790971434 2 425.7748718261719 MULTI HCD FTMS 0 0 0 6832 133411.21875 0.7328910686154652 3 -0.07955551147460938 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.5885 0 0 684.4562790988997 0 684.4562790988997 0 11.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5885 - 6 + NaN NaN 110585.2 NaN 4670 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6834 38.479 NaN 461460 35 0 46482 0.261 + 9451 HPVSREWTL 9 56 562.7957015412279 1123.5768501492557 2 562.7960815429688 MULTI HCD FTMS 0 0 0 6832 205798.25 0.24961582805835245 -4 0.12428665161132812 2 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 34.93206674587334 0.08860942999206235 1 HPVS 4 5 40.433 0 0 3.5986 0 0 0 700.3430880182249 700.3430880182249 6.4928876664371415 0 0 0 0 0.5 0 0.6989700043360187 0 + HPVS 3.5986 + + 134 + NaN NaN 145515.5 NaN 4671 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6835 38.483 NaN 88817 35 0 5254.7 0.261 + 21731 QADSLERSL 9 47 509.76165557772026 1017.5087582222405 2 509.76190185546875 MULTI HCD FTMS 0 0 0 6832 48450.75390625 0.10488462397343505 7 -0.20222854614257812 3 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 4.897010918128616 0.31389406404703984 1 [QA]DS 4 5 16.198 0 0 1.5919 0 0 0 613.3328341119749 613.3328341119749 9.208187539523749 0 0 0 0 0 0 0 0 + [QA]DS 1.5919 + + 13 + NaN NaN 87282.9 NaN 4672 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6836 38.486 NaN 70548 35 0 6232.3 0.261 + 27890 TEEDLDLVTL 10 21 574.2907481779872 1146.5669434227743 2 574.7924194335938 MULTI HCD FTMS 0 0 0 6832 19470.12890625 0.007045878846336353 108 -2.9468917846679688 4 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 1 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3549073480613 0 815.3549073480613 0 13.494850021680094 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 10 NaN NaN 93618.8 NaN 4673 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6837 38.489 NaN 61068 35 0 17264 0.261 -1 IMYKIIEMSA 10 21 607.8116269947267 1213.6087010562533 2 607.8115234375 MULTI HCD FTMS 0 0 0 6832 27947.765625 0.49665805678523284 6 -0.16573715209960938 5 Oxidation (M) _IM(Oxidation (M))YKIIEMSA_ ENSG00000059588|ENST00000040877|TARBP1 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89957.7 NaN 4674 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6838 38.493 NaN 139980 35 0 19162 0.264 -1 VYTRHMTWI 9 43 408.20603883039854 1221.5962870913957 3 408.2065124511719 MULTI HCD FTMS 0 0 0 6832 48495.66015625 0.42722425292727795 -10 0.3036155700683594 6 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 12.174745833636585 0.2551692358394414 1 VY 2 -1 37.959 0 0 3.1073 0 0 0 956.440157690192 956.440157690192 13.182503180159344 0 0 0 0 0 2 0 0 VY 3.1073 + + 5 + NaN NaN 106103.2 NaN 4675 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6839 38.496 NaN 32610 35 0 4652.8 0.261 + -1 HQKLTDMV 8 24 494.2497371348355 986.4849213364711 2 494.2499694824219 MULTI HCD FTMS 0 0 0 6832 19838.462890625 0.0833850168154249 9 -0.25524139404296875 7 Oxidation (M) _HQKLTDM(Oxidation (M))V_ REV__ENSG00000023330|ENST00000484952|ALAS1 2.302733041254933 0.5385759549224092 1 M{[SA]|[TG]} 3 -1 5.9421 0 0 0.60235 0 0 679.3588734357437 0 679.3588734357437 0 0.45757490560674974 0 0 0 0 0 0 0 M{[SA]|[TG]} 0.60235 - 4 NaN NaN 100476.3 NaN 4676 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6840 38.499 NaN 50322 35 0 10818 0.261 -1 0 30 441.29743767595807 440.2901612093581 1 441.2974853515625 MULTI HCD FTMS 0 0 0 6832 24426.568359375 0.49845927400905216 -32 0.9375686645507812 8 NaN NaN 1 S 1 -1 6.9897 0 0 1.5875 0 0 131.24513054705182 218.99067102603752 350.23580157308936 0 0 0 0 0 0 0 0 0 S 1.5875 - 1 + NaN NaN 97389.5 NaN 4677 2161 6832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6842 38.505 NaN 379750 35 0 58913 0.327 + 27699 TANQDGRVIL 10 44 543.7986321218036 1085.5827113104071 2 543.798828125 MULTI HCD FTMS 0 0 0 6841 174628.84375 1 0 0 1 Unmodified _TANQDGRVIL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 42.312485326615175 0.12533928745458864 1 [TA]NQD{[NV]|[RG]}V{I|L}{I|L} 10 0 + 38.178 0 0 3.5168 3.5168 83.486 0 0 0 18.172874778693355 1.8027839722898875 1.8027839722898875 9.164539485499251 0 1.805462187404089 0 0 0 + + [TA]NQD{[NV]|[RG]}V{I|L}{I|L};[TA]N[AG]D{[NV]|[RG]}V{I|L}{I|L};[TA]GGQD{[NV]|[RG]}V{I|L}{I|L} 3.5168;2.6726;2.6726 +;-;- + 73 + NaN NaN 133766.3 NaN 4678 2162 6841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6843 38.509 NaN 141890 35 0 13745 0.261 -1 SFVILCVCSL 10 31 570.7934870072348 1139.5724210812696 2 570.7938232421875 MULTI HCD FTMS 0 0 0 6841 52664.6015625 0.3635856001511931 -3 0.08624649047851562 2 Carbamidomethyl (C) _SFVILC(Carbamidomethyl (C))VCSL_ ENSG00000164715|ENST00000297293|LMTK2 13.90604991867851 0.3810395177745597 1 HPVS 4 -1 43.488 0 0 3.8161 0 0 0 716.3365572565061 716.3365572565061 38.00312209084183 0 0 0 0 0.5 0 0.805462187404089 0 HPVS 3.8161 - 16 + NaN NaN 108238.1 NaN 4679 2162 6841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6844 38.513 NaN 80539 35 0 7962.7 0.261 + 27744 TATKIEITM 9 36 512.2731414816805 1022.5317300301609 2 512.2730712890625 MULTI HCD FTMS 0 0 0 6841 40002.5390625 0.21414191254062584 -9 0.2836799621582031 3 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 47.594388314883695 0.03493607795751234 1 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 55.212 0 0 5.3995 5.3995 91.925 0 0 0 33.969771685254386 15.787268505095042 15.787268505095042 55.2119811855394 0 1.7302046884880937 0 0.3807196863200844 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 5.3995 + + 26 + NaN NaN 90407.4 NaN 4680 2162 6841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6845 38.516 NaN 159710 35 0 17843 0.261 + 680 APVETEPKL 9 47 492.2744463589099 982.5343397846199 2 492.2730407714844 MULTI HCD FTMS 0 0 0 6841 70092.65625 0.23434980184438156 -5 0.15415573120117188 4 Unmodified _APVETEPKL_ ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B 47.594388314883695 0.03493607795751234 1 APVE 4 5 46.542 0 0 4.737 0 0 0 583.3087798335821 583.3087798335821 6.202431538265145 0 0 0 0 1.1861818737241734 0 0.4247425010840047 0 + APVE 4.737 + + 290 + NaN NaN 104481.1 NaN 4681 2162 6841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6846 38.519 NaN 45672 35 0 6730.2 0.261 -1 MPVGMTHGL 9 24 479.7277665797613 NaN 0 479.7279357910156 PEAK HCD FTMS 0 0 0 6841 14759.052734375 0.5954459618705487 2 -0.049686431884765625 5 Oxidation (M) _MPVGM(Oxidation (M))THGL_ ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant 7.289230182591677 0.2599242500475609 1 PV 2 -1 14.464 0 0 1.5107 0 0 131.04117519266578 627.257933499645 758.2991086923107 0 0 0 0 0 0.3494850021680094 0 0 0 PV 1.5107 + + 3 + NaN NaN 110467.7 NaN 4682 2162 6841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6847 38.523 NaN 89293 35 0 9070.2 0.261 + 8966 HPDYGSHIQAL 11 31 619.3018800834647 1236.5892072337292 2 619.3011474609375 MULTI HCD FTMS 0 0 0 6841 39825.296875 0.5245946683277609 -6 0.18735885620117188 6 Unmodified _HPDYGSHIQAL_ ENSG00000121691|ENST00000241052|CAT 42.312485326615175 0.12205692784641806 1 {I|L}QA{I|L} 4 7 29.725 0 0 2.4038 0 0 793.3075428693375 0 793.3075428693375 0 6.052659518797938 0 0 0 0.3807196863200844 0 0 0 + {I|L}QA{I|L} 2.4038 + + 18 NaN NaN 97010.6 NaN 4683 2162 6841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6849 38.528 NaN 1927500 35 0 183240 0.327 + 197 AETVRYSMCT 10 104 580.756873986535 1159.4991950398698 2 580.757568359375 MULTI HCD FTMS 0 0 0 6848 1195147.125 0.72903952936074 3 -0.08618545532226562 1 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 22.736283301280096 0.29844449404982915 1 [YR]{I|L}EGTSC[MT] 10 8 + 76.216 0 0 6.5732 6.5732 92.263 0 0 0 10.860659001642858 26.301438553739473 10.860659001642858 22.05591267411001 0 2.524227503252014 0.958607314841775 0.7742275032520141 0 [YR]{I|L}EGTSC[MT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC[MT];[YR]{I|L}WGMC[MT];[YR]{[CP]|[EA]}VTSC[MT];[YR]{I|L}EGGS{M(Oxidation (M))|F}[MT];[YR]{I|L}ENS{M(Oxidation (M))|F}[MT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]GE{I|L}{[MG]|[TS]}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}CSTV{[RE]|[WV]}C{I|L};[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVWGMC[MT] 6.5732;4.671;4.0902;3.8119;3.8098;3.1397;2.7073;2.6451;2.5996;2.5506 -;-;-;-;-;-;-;-;-;- 3319 NaN NaN 387349.5 NaN 4684 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6850 38.532 NaN 299970 35 0 53847 0.262 + 789 ATAGIIGVNR 10 45 486.28519347578305 970.5558340183661 2 486.28515625 MULTI HCD FTMS 0 0 0 6848 164744.015625 0.8169012502204257 -2 0.053028106689453125 2 Unmodified _ATAGIIGVNR_ CLTC-VMP1|1|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;ENSG00000141367|ENST00000269122|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC 89.40071534611396 0.0010484101455745577 1 {[QD]|[EN]|[WG]|[KD]|[RS]}G{I|L}{I|L}GVNR 9 3 + 78.07 0 0 8.0438 8.0438 89.935 0 0 0 43.333267986193675 12.98332479720628 12.98332479720628 7.447274948966935 0 2.1237125054200234 1.3979400086720375 0 0 {[QD]|[EN]|[WG]|[KD]|[RS]}G{I|L}{I|L}GVNR;[TA]AG{I|L}{I|L}GVNR;{[QD]|[EN]|[WG]|[KD]|[RS]}G{I|L}{I|L}GVGGR;[TA]Q{I|L}{I|L}GVNR;[TA]AG{I|L}{I|L}GVGGR;[TA]Q{I|L}{I|L}GVGGR;[TA][KS][VP]VNR 8.0438;7.2765;7.0951;6.6035;6.3323;5.6547;1.6094 -;+;-;-;-;-;- + 154 + NaN NaN 127309.6 NaN 4685 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6851 38.536 NaN 149270 35 0 14090 0.261 -1 HPTGKMFIL 9 40 530.2863593624666 1058.558165791733 2 530.2866821289062 MULTI HCD FTMS 0 0 0 6848 71191.1953125 0.48542299072374556 6 -0.17902374267578125 3 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 1 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3778780572874 720.3778780572874 25.981362441963327 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 52 + NaN NaN 125074.1 NaN 4686 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6852 38.539 NaN 87229 35 0 11213 0.261 -1 HPVLKEMEVQ 10 33 613.3159539454991 1224.6173549577982 2 613.316162109375 MULTI HCD FTMS 0 0 0 6848 54449.109375 0.32258369998114345 17 -0.4369049072265625 4 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4132311686028 888.4132311686028 20.228787452803374 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 7 + NaN NaN 95772.9 NaN 4687 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6853 38.542 NaN 71340 35 0 13179 0.263 + 16690 LWTGFWPA 8 26 489.24616342830205 NaN 0 489.25604248046875 PEAK HCD FTMS 0 0 0 6848 2535.3251953125 0.38510073918543125 -2 0.053028106689453125 5 Unmodified _LWTGFWPA_ ENSG00000140688|ENST00000327237|RUSF1 5.230669730166228 0.38822285293237185 1 EE 2 8 8.5835 0 0 0.87903 0 0 221.14197177672287 494.2245272272094 715.3664990039323 0 0 0 0 0 0 0 0 0 EE 0.87903 - 4 + NaN NaN 97250.6 NaN 4688 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6854 38.546 NaN 36889 35 0 5720.4 0.261 + 26204 SPSKESVVL 9 27 473.26614763958423 944.5177423459685 2 473.26629638671875 MULTI HCD FTMS 0 0 0 6848 18849.486328125 0.7662354489938002 3 -0.08618545532226562 6 Unmodified _SPSKESVVL_ ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant 2.9952420565917617 0.3283108881486655 1 V{I|L} 2 7 19.464 0 0 2.0607 0 0 714.3519764630875 0 714.3519764630875 0 13.979400086720375 0 0 0 0 0 0 0 + V{I|L} 2.0607 + + 4 NaN NaN 84841.1 NaN 4689 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6855 38.549 NaN 15145 35 0 3603.7 0.261 + -1 HDMIPFPPSF 10 11 602.2771905527773 1202.5398281723544 2 602.2777709960938 MULTI HCD FTMS 0 0 0 6848 2758.689697265625 0.10475628656775042 18 -0.4630279541015625 7 Oxidation (M) _HDM(Oxidation (M))IPFPPSF_ REV__ENSG00000031081|ENST00000264245|ARHGAP31 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87909 NaN 4690 2163 6848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6857 38.554 NaN 132110 35 0 11145 0.327 -1 TAISENYQTM 10 53 587.257930581979 1172.501308230758 2 587.7470703125 MULTI HCD FTMS 0 0 0 6856 12521.1083984375 0.39602881318134164 5 -0.152496337890625 1 Oxidation (M) _TAISENYQTM(Oxidation (M))_ ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000565906.2_1_15:89532752-89533049:-|nuORF 27.223235318498237 0.2564750587861972 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.5317 0 0 906.4105091779312 0 906.4105091779312 0 7.161903266879719 0 0 0 0.3494850021680094 0 0 0 T{M(Oxidation (M))|F} 1.5317 + + 82 NaN NaN 106145.2 NaN 4691 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6858 38.559 NaN 70855 35 0 8107.4 0.262 + 4549 EYLKDNLA 8 39 483.25029728544854 964.4860416376971 2 483.25 MULTI HCD FTMS 0 0 0 6856 34873.52734375 0.1222952941282191 8 -0.2186431884765625 2 Unmodified _EYLKDNLA_ REV__ENSG00000103043|ENST00000261776|VAC14 2.577480529830294 0.5381683276125971 1 AEE 3 -1 17.307 0 0 1.7944 0 0 130.09604027226584 502.24131189517817 632.337352167444 0 0 0 0 0 0 0 0.5 0 AEE 1.7944 - 20 + NaN NaN 94562.4 NaN 4692 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6859 38.562 NaN 21321 35 0 5208.1 0.261 + 4933 FANEEGEAQKF 11 18 635.29086574652 1268.56717855984 2 635.2908935546875 MULTI HCD FTMS 0 0 0 6856 23970.994140625 0.7277632282243232 1 -0.029842376708984375 3 Unmodified _FANEEGEAQKF_ ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 5.783430956126388 0.39355650299313505 1 E 1 10 6.9897 0 0 0.55099 0 0 461.18669867878367 675.3103121393186 1136.4970108181024 0 0 0 0 0 0 0 0 0 + E 0.55099 + + 2 + NaN NaN 91465.1 NaN 4693 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6860 38.566 NaN 118410 35 0 25638 0.261 + 9113 HPGDGLAHLAL 11 37 550.795964060612 1099.577375188024 2 550.7959594726562 MULTI HCD FTMS 0 0 0 6856 20984.560546875 0.055400862950532294 19 -0.4893836975097656 4 Unmodified _HPGDGLAHLAL_ ENST00000602351.5_1_19:49645338-49651464:+|nuORF 16.149105407346934 0.31637472687818013 1 {I|L}A{I|L} 3 8 29.693 0 0 2.7004 0 0 784.3650990216812 0 784.3650990216812 0 8.494850021680094 0 0 0 0.3494850021680094 0 0 0 + {I|L}A{I|L} 2.7004 + + 19 NaN NaN 122497.9 NaN 4694 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6861 38.569 NaN 60690 35 0 12643 0.262 + 28376 TPEEGAQAL 9 28 458.22430816056055 914.4340633879211 2 458.22442626953125 MULTI HCD FTMS 0 0 0 6856 30528.228515625 0.572085433633681 -3 0.07955551147460938 5 Unmodified _TPEEGAQAL_ ENSG00000100304|ENST00000216129|TTLL12 13.90604991867851 0.24021115267848145 1 QA{I|L} 3 6 36.198 0 0 3.9585 0 0 584.244432517775 0 584.244432517775 0 36.197887582883936 0 0 0 1 0 0 0 + QA{I|L} 3.9585 + + 7 NaN NaN 101759.4 NaN 4695 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6862 38.572 NaN 65337 35 0 7906.9 0.261 -1 EERLKEME 8 29 540.2558309866322 1078.4971090400643 2 540.2556762695312 MULTI HCD FTMS 0 0 0 6856 12872.056640625 0.5983292881794048 1 -0.029842376708984375 6 Oxidation (M) _EERLKEM(Oxidation (M))E_ ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;REV__ENSG00000214338|ENST00000525778|SOGA3 4.3292370932331545 0.5355693454741696 1 Q 1 -1 6.9897 0 0 0.6481 0 0 130.03008130744553 817.3858126275999 947.4158939350455 0 0 0 0 0 0 0 0 0 Q 0.6481 - 15 + NaN NaN 92990.8 NaN 4696 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6863 38.576 NaN 182330 35 0 45370 0.261 + 20176 NYKMVFKI 8 37 521.7922703584154 1041.5699877836307 2 521.7933959960938 MULTI HCD FTMS 0 0 0 6856 10160.744140625 0.17350651452250881 6 -0.17568588256835938 7 Unmodified _NYKMVFKI_ REV__ENST00000451333.1_1_2:71037932-71038202:-|nuORF 2.577480529830294 0.5381683276125971 1 T 1 -1 3.0989 0 0 0.29753 0 0 183.13909286351196 754.3635958307249 937.5026886942369 0 0 0 0 0 0 0 0 0 T 0.29753 - 10 + NaN NaN 118340.6 NaN 4697 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6864 38.579 NaN 46665 35 0 8227.9 0.261 + -1 MSLPTEERL 9 30 546.2739272269336 1090.533301520667 2 546.2739868164062 MULTI HCD FTMS 0 0 0 6856 2207.781005859375 0.11839483008151387 -6 0.17729568481445312 8 Oxidation (M) _M(Oxidation (M))SLPTEERL_ REV__nc|ENSG00000187243|Q96JG8-4|MAGED4 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89891.6 NaN 4698 2164 6856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6866 38.584 NaN 200820 35 0 37122 0.327 -1 0 43 448.7268004981133 895.4390480630266 2 449.2191162109375 MULTI HCD FTMS 0 0 0 6865 19357.603515625 0.6118579942222528 3 -0.09283065795898438 1 NaN NaN 1 VG{I|L} 3 -1 27.703 0 0 3.0938 0 0 608.2554798810562 0 608.2554798810562 0 27.703037561203843 0 0 0 1 0 0 0 VG{I|L} 3.0938 - 8 NaN NaN 107077.3 NaN 4699 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6867 38.589 NaN 192710 35 0 31027 0.261 -1 VYTRHMTWI 9 44 408.20603883039854 1221.5962870913957 3 408.2061767578125 MULTI HCD FTMS 0 0 0 6865 83687.0625 0.7372441707370622 -6 0.16577529907226562 2 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 12.174745833636585 0.2551692358394414 1 VY 2 -1 36.198 0 0 2.9632 0 0 0 956.4392321370382 956.4392321370382 15.228787452803374 0 0 0 0 0 2 0 0 VY 2.9632 + + 13 + NaN NaN 104571.4 NaN 4700 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6868 38.592 NaN 154110 35 0 36619 0.261 + 25069 SACPEYNRL 9 35 526.7450843259318 1051.4756157186634 2 526.7449951171875 MULTI HCD FTMS 0 0 0 6865 46728.84765625 0.6983627399606946 -2 0.056369781494140625 3 Unmodified _SACPEYNRL_ ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 19.361941925380144 0.1930734562688509 1 {[SA]|[TG]}CV 4 6 25.005 0 0 2.3781 0 0 0 688.3088472955686 688.3088472955686 14.520534381044499 0 0 0 0 0.8807196863200843 0 0 0 {[SA]|[TG]}CV 2.3781 - 18 + NaN NaN 111773.6 NaN 4701 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6869 38.595 NaN 248340 35 0 30625 0.261 + 9307 HPQPGAVEL 9 36 474.250840207838 946.487127482476 2 474.25030517578125 MULTI HCD FTMS 0 0 0 6865 96867.8203125 0.2333784226258931 -4 0.10939788818359375 4 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 32.78568957990786 0.09846250359632436 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L} 8 2 + 52.669 0 0 5.5647 5.5647 84.55 0 0 0 11.906140654642812 52.668884535972325 11.906140654642812 4.771212547196626 0 1.774227503252014 0 0.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VKN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VKN 5.5647;5.0606;4.5861;4.082 -;-;-;- 50 NaN NaN 111544.9 NaN 4702 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6870 38.599 NaN 100950 35 0 20881 0.261 + 30855 VQNYVLTLMN 10 29 597.8130841336915 1193.611615334183 2 597.81298828125 MULTI HCD FTMS 0 0 0 6865 24557.453125 0.05157491358442133 100 -2.7253189086914062 5 Unmodified _VQNYVLTLMN_ ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 3.2813086475875832 0.45793521633868084 1 K 1 10 8.9794 0 0 0.75229 0 0 504.2249098671892 558.2700899713499 1062.4949998385391 0 0 0 0 0 0.3494850021680094 0 0 0 K 0.75229 - 7 + NaN NaN 94980.3 NaN 4703 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6871 38.602 NaN 119780 35 0 14925 0.261 -1 0 44 551.7545627920932 1101.4945726509864 2 551.757080078125 MULTI HCD FTMS 0 0 0 6865 11969.2724609375 0.11311183392718145 20 -0.5124855041503906 6 NaN NaN 1 T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VEH[Q{I|L}] 8 -1 10.072 0 0 0.91438 0 0 132.03273290664885 0 132.03273290664885 0 7.597587459137717 0 0 0 0 0 0.5 0 T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VEH[Q{I|L}] 0.91438 - 80 + NaN NaN 102011.9 NaN 4704 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6872 38.605 NaN 74250 35 0 7914.5 0.261 + 31565 VYHHLVETL 9 34 555.8006501414237 1109.5867473496473 2 555.8006591796875 MULTI HCD FTMS 0 0 0 6865 33664.21484375 0.688917118002063 -2 0.056369781494140625 7 Unmodified _VYHHLVETL_ ENSG00000099998|ENST00000327365|GGT5;GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;nc|ENSG00000099998|P36269-2|GGT5;nc|ENSG00000099998|P36269-3|GGT5 16.942295170755138 0.21397866736869717 1 VET{I|L} 4 5 36.186 0 0 3.2612 0 0 649.3306141584 0 649.3306141584 0 30.70107520596089 0 0 0 0 0 0.4247425010840047 0 + VET{I|L} 3.2612 + + 13 NaN NaN 98532 NaN 4705 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6873 38.609 NaN 43388 35 0 8519.4 0.263 + -1 SFNGELCLLQQ 11 27 436.8792279492616 NaN 0 436.8790588378906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _SFNGELC(Carbamidomethyl (C))LLQQ_ REV__ENSG00000136542|ENST00000259056|GALNT5 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80007.3 NaN 4706 2165 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6875 38.614 NaN 578150 35 0 256700 0.327 + 8940 HPDQAQAIL 9 36 496.76143455133644 991.5083161694729 2 496.7615661621094 MULTI HCD FTMS 0 0 0 6874 256862.734375 0.9680226933255417 1 -0.026523590087890625 1 Unmodified _HPDQAQAIL_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 17.11289562659939 0.2125047172822487 1 A{I|L}{I|L} 3 6 36.198 0 0 3.6508 0 0 676.2931170926291 0 676.2931170926291 0 33.72363747448347 0 0 0 1 0 0 0 + A{I|L}{I|L} 3.6508 + + 10 NaN NaN 169609.1 NaN 4707 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6876 38.618 NaN 258820 35 0 74445 0.261 + 21043 PLSSADGDIK 10 38 501.75842950491415 1001.5023060766283 2 502.2418212890625 MULTI HCD FTMS 0 0 0 6874 8388.6826171875 0.30325408515208474 -8 0.2369537353515625 2 Unmodified _PLSSADGDIK_ REV__ENST00000561743.5_2_16:58054145-58054301:+|nuORF 6.2057823575117 0.44245551207394906 1 PCEE[DG][K{I|L}] 8 -1 23.193 0 0 2.3158 0 0 112.11785733201039 0 112.11785733201039 0 2.0166752027937207 0 0 0 0 0 0.3807196863200844 0 PCEE[DG][K{I|L}] 2.3158 - 52 + NaN NaN 123401.6 NaN 4708 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6877 38.622 NaN 163140 35 0 19505 0.261 + 8895 HPAVLTLSGI 10 51 504.2977957027317 1006.5810384722635 2 504.2977294921875 MULTI HCD FTMS 0 0 0 6874 41069.65625 0.018581412957035835 74 -1.9962158203125 3 Unmodified _HPAVLTLSGI_ ENST00000229829.6_1_6:32974298-32974526:-|nuORF 10.073929032068715 0.4168838835836452 1 HP 2 8 23.271 0 0 2.3119 0 0 0 769.4486178033811 769.4486178033811 9.291746928241125 0 0 0 0 0.3807196863200844 0 0 0 + HP 2.3119 + + 11 + NaN NaN 105590.4 NaN 4709 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6878 38.625 NaN 58423 35 0 12126 0.261 + 21105 PNLVDITNL 9 23 499.77922615676584 NaN 0 499.7795104980469 PEAK HCD FTMS 0 0 0 6874 24478.068359375 1 0 0 4 Unmodified _PNLVDITNL_ REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF 9.38312468134398 0.24977752951804 1 {I|L} 1 -1 10.485 0 0 1.051 0 0 673.3642861984943 208.0721377008422 881.4364238993364 0 0 0 0 0 0.5 0 0 0 {I|L} 1.051 + + 2 + NaN NaN 83794.3 NaN 4710 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6879 38.629 NaN 54366 35 0 5722.7 0.261 + 22208 QLQPQEPQI 9 24 540.7863086293163 1079.5580643254325 2 540.787353515625 MULTI HCD FTMS 0 0 0 6874 14790.0732421875 0.7075009880231968 3 -0.09283828735351562 5 Unmodified _QLQPQEPQI_ ENSG00000241058|ENST00000377304|NSUN6 5.731851221503515 0.3075653528928475 1 Q{I|L} 2 7 24.776 0 0 2.295 0 0 820.4100312507192 0 820.4100312507192 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 + Q{I|L} 2.295 + + 6 NaN NaN 104204.4 NaN 4711 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6880 38.632 NaN 89556 35 0 20626 0.261 + 21192 PQEPQLNL 8 27 469.7504594599557 937.4863659867115 2 469.7502136230469 MULTI HCD FTMS 0 0 0 6874 23701.876953125 0.5471846238435178 3 -0.09283828735351562 6 Unmodified _PQEPQLNL_ REV__ENSG00000167925|ENST00000587427|GHDC;REV__GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;REV__nc|ENSG00000167925|Q8N2G8-2|GHDC;REV__nc|ENSG00000167925|Q8N2G8-3|GHDC 4.3292370932331545 0.5355693454741696 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104683.1 NaN 4712 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6881 38.635 NaN 57320 35 0 7061.2 0.261 + 23969 RVPCWKITLF 10 51 421.5747351828435 1261.7023761487305 3 421.5753173828125 MULTI HCD FTMS 0 0 0 6874 10714.4033203125 0.6702114850944202 14 -0.3507194519042969 7 Unmodified _RVPCWKITLF_ ENSG00000204655|ENST00000376917|MOG;nc|ENSG00000204655|Q16653-13|MOG;nc|ENSG00000204655|Q16653-4|MOG;nc|ENSG00000204655|Q16653-5|MOG 1.7422754331352037 0.46608156381052757 1 {I|L} 1 9 2.4743 0 0 0.1961 0 0 769.4026762969712 376.18866907291255 1145.5913453698838 0 0 0 0 0 0 0 0 0 + {I|L} 0.1961 + + 5 + NaN NaN 85596.4 NaN 4713 2166 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6883 38.64 NaN 1476000 35 0 154400 0.327 + 9452 HPVSREWTL 9 91 562.7957015412279 1123.5768501492557 2 562.7960205078125 MULTI HCD FTMS 0 0 0 6882 802444 0.9732965344965595 2 -0.066314697265625 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 67.83816525789305 0.009787749748478139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[QP]EAPH{I|L} 10 5 + 52.519 0 0 4.6743 4.6743 81.461 0 0 0 1.3431156469699346 1.3431156469699346 1.3431156469699346 1.3431156469699346 0 1 0 1.5669015600442577 0.6549471895720985 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[QP]EAPH{I|L};HPVS{[RE]|[WV]}WT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]REAPH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[QP]EAP{I|L}H;[VP]H[QP]EAPH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]R{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]REAP{I|L}H;[VP]H[QP]EAP{I|L}H;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[HA]{[NV]|[RG]}HT{I|L};H{I|L}WE{[CP]|[EA]}AR{I|L} 4.6743;4.5547;4.2089;4.0675;3.9108;3.6448;3.6021;3.304;3.1316;2.9941 -;+;-;-;-;-;-;-;-;- + 3310 NaN NaN 314987.5 NaN 4714 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6884 38.645 NaN 128290 35 0 18565 0.261 + 27700 TANQDGRVIL 10 37 543.7986321218036 1085.5827113104071 2 543.7989501953125 MULTI HCD FTMS 0 0 0 6882 70650.03125 0.4045725192519921 5 -0.1324615478515625 2 Unmodified _TANQDGRVIL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 22.65808497894818 0.29917593477267174 1 {I|L}C(Carbamidomethyl (C))R{I|L}{I|L} 5 7 37.976 0 0 3.4982 0 0 412.1884937970719 0 412.1884937970719 0 32.49159686636801 0 0 0 0.5 0 0 0.805462187404089 {I|L}C(Carbamidomethyl (C))R{I|L}{I|L} 3.4982 - 42 NaN NaN 103645 NaN 4715 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6885 38.648 NaN 200720 35 0 32706 0.263 -1 VYTRHMTWI 9 45 408.20603883039854 1221.5962870913957 3 408.2061462402344 MULTI HCD FTMS 0 0 0 6882 86276.1171875 0.7600525406219395 -4 0.11270904541015625 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 16.565877749689598 0.21723083036893404 1 VY 2 -1 42.206 0 0 3.455 0 0 0 956.4388409956345 956.4388409956345 16.989700043360187 0 0 0 0 0.4247425010840047 2 0 0 VY 3.455 + + 19 + NaN NaN 111383.2 NaN 4716 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6886 38.652 NaN 211700 35 0 30248 0.261 + 17851 MIANDVHTL 9 56 515.2551603461234 1028.4957677590467 2 515.2551879882812 MULTI HCD FTMS 0 0 0 6882 87819.2265625 0.8648295012293256 -1 0.026523590087890625 4 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 103.41943736471063 0.004016698775839292 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVHT{I|L} 9 0 + 90.205 0 0 8.7705 8.7705 94.212 0 0 0 18.471938139719114 69.56969254788858 18.471938139719114 12.09544243948811 0 2.6989700043360187 2 0.3494850021680094 0.28872548999643577 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVHT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AGGDVHT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[HS]AE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}{[DA]|[EG]}HT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[Y{M(Oxidation (M))|F}]QQ{I|L};[Y{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}C]|[YS]}VHT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[YN]{M(Oxidation (M))|F}{I|L} 8.7705;7.5945;4.5547;4.1379;3.6582;2.9624;2.8794 +;-;-;-;-;-;- + 234 NaN NaN 116440.6 NaN 4717 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6887 38.655 NaN 90274 35 0 9651.5 0.261 + 25095 SAEPLHEAI 9 41 483.74816940671303 965.4817858802261 2 483.74810791015625 MULTI HCD FTMS 0 0 0 6882 47424.26171875 0.9339020618350513 1 -0.03649139404296875 5 Unmodified _SAEPLHEAI_ REV__ENSG00000170074|ENST00000614127|FAM153A;REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF;REV__nc|ENSG00000170074|Q9UHL3|FAM153A 16.942295170755138 0.21397866736869717 1 EA{I|L} 3 -1 36.242 0 0 3.7538 0 0 634.3087635724625 0 634.3087635724625 0 14.916440611282624 0 0 0 0.5 0 0.805462187404089 0 EA{I|L} 3.7538 + + 17 NaN NaN 98609.6 NaN 4718 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6888 38.658 NaN 87428 35 0 10723 0.261 + 20825 PHSPPQAEALT 11 26 574.2907481779872 1146.5669434227743 2 574.2913818359375 MULTI HCD FTMS 0 0 0 6882 29710.55078125 0.006725049878131951 113 -3.057231903076172 6 Unmodified _PHSPPQAEALT_ REV__ENSG00000104880|ENST00000668164|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 14.405379775768559 0.3315678654765638 1 V{I|L}T 3 -1 31.198 0 0 2.721 0 0 815.3512440412125 0 815.3512440412125 0 9.744237387763093 0 0 0 0.5 0 0 0 V{I|L}T 2.721 - 24 NaN NaN 104228.6 NaN 4719 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6889 38.662 NaN 66892 35 0 5626.3 0.261 -1 HPACMLPPHL 10 26 586.7907968230946 1171.5670407129892 2 586.7886352539062 MULTI HCD FTMS 0 0 0 6882 31576.705078125 0.8800023536004971 1 -0.03649139404296875 7 Carbamidomethyl (C) _HPAC(Carbamidomethyl (C))MLPPHL_ ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF 7.910154910731844 0.4334339971971892 1 HPV 3 -1 31.198 0 0 2.6629 0 0 0 835.3585299127561 835.3585299127561 21.73393743112328 0 0 0 0 0.5 0 0 0 HPV 2.6629 - 9 + NaN NaN 118037.1 NaN 4720 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6890 38.665 NaN 44668 35 0 4088.3 0.261 + 21732 QADSLERSL 9 33 509.76165557772026 1017.5087582222405 2 509.7617492675781 MULTI HCD FTMS 0 0 0 6882 21144.380859375 0.04577267135776323 13 -0.32419586181640625 8 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 7.101721422024254 0.29718071671418667 1 Y[WY]{I|L} 4 8 14.693 0 0 1.444 0 0 374.2279530255875 0 374.2279530255875 0 5.740312677277187 0 0 0 0 0 0 0 Y[WY]{I|L} 1.444 - 5 NaN NaN 98188.8 NaN 4721 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6891 38.668 NaN 48189 35 0 6692.9 0.261 + -1 MPNIKTMM 8 33 507.22908084551716 NaN 0 507.2292175292969 PEAK HCD FTMS 0 0 0 6882 16160.91796875 0.753191286003946 1 -0.03649139404296875 9 3 Oxidation (M) _M(Oxidation (M))PNIKTM(Oxidation (M))M(Oxidation (M))_ REV__ENST00000369577.7_1_6:87965292-87965355:+|nuORF 7.910154910731844 0.38822285293237185 1 NS 2 -1 15.217 0 0 1.503 0 0 244.08754293927808 564.2615450494749 808.3490879887529 0 0 0 0 0 0.4247425010840047 0 0 0 NS 1.503 - 5 + NaN NaN 92299.6 NaN 4722 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6892 38.672 NaN 70769 35 0 8228.4 0.261 + 2238 DLAKSHEYQ 9 37 545.761665186123 1089.5087774390458 2 546.2455444335938 MULTI HCD FTMS 0 0 0 6882 2998.62060546875 0.08687003549277515 -15 0.4428253173828125 10 Unmodified _DLAKSHEYQ_ chr12:8852012-8852216|134|13.73|0.71|4.27|+|0|A2ML1,None|1;ENSG00000166535|ENST00000299698|A2ML1;nc|ENSG00000166535|A8K2U0-2|A2ML1 3.5964929083625545 0.32375295897743744 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 4 6 13.188 0 0 1.2104 0 0 0 624.2750136474477 624.2750136474477 2.730012720637374 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 1.2104 - 4 + NaN NaN 85843.3 NaN 4723 2167 6882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6894 38.677 NaN 525320 35 0 46851 0.327 + 198 AETVRYSMCT 10 75 580.756873986535 1159.4991950398698 2 580.75732421875 MULTI HCD FTMS 0 0 0 6893 296207.75 0.18068667374571457 8 -0.18515777587890625 1 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 12.240655878213236 0.39661705172222156 1 [YR]{I|L}EGTS 7 8 56.361 0 0 4.8608 0 0 0 350.084659365046 350.084659365046 29.99929950749467 0 0 0 0 2.388210492164445 0 0.7742275032520141 0 [YR]{I|L}EGTS 4.8608 - 709 NaN NaN 168827.8 NaN 4724 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6895 38.681 NaN 407290 35 0 36141 0.261 + 681 APVETEPKL 9 63 492.2744463589099 982.5343397846199 2 492.2740478515625 MULTI HCD FTMS 0 0 0 6893 205896.53125 0.6884003814434272 1 -0.02982330322265625 2 Unmodified _APVETEPKL_ ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B 70.33199760932243 0.0089807860198535 1 APVE{[ET]|[MV]}PK{I|L} 9 0 + 73.171 0 0 7.4471 7.4471 89.08 0 0 0 39.26722230447559 5.999161495794425 5.999161495794425 7.525749891599531 0 2.4291746928241125 1.3979400086720375 0.3807196863200844 0 + + APVE{[ET]|[MV]}PK{I|L};[PA]VE{[ET]|[MV]}PK{I|L};[VP]AE{[ET]|[MV]}PK{I|L};{NN|[MP]|[D{I|L}]|[EV]}PA{[ET]|[MV]}PK{I|L};{NN|[MP]|[D{I|L}]|[EV]}P{[ET]|[MV]}APK{I|L};[VP]EA{[ET]|[MV]}PK{I|L};[VP]E{[ET]|[MV]}APK{I|L};{I|L}[PG]E{[ET]|[MV]}PK{I|L};[PA]V[YR][HQ]{I|L};[VP]A[YR][HQ]{I|L} 7.4471;6.6812;5.4721;5.1778;5.0766;4.9632;4.862;4.0394;3.3425;2.1334 +;+;-;-;-;-;-;-;-;- + 298 + NaN NaN 155747 NaN 4725 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6896 38.685 NaN 157850 35 0 28804 0.261 + 790 ATAGIIGVNR 10 35 486.28519347578305 970.5558340183661 2 486.2852478027344 MULTI HCD FTMS 0 0 0 6893 93098.7578125 0.4616403901681929 3 -0.07948684692382812 3 Unmodified _ATAGIIGVNR_ CLTC-VMP1|1|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;ENSG00000141367|ENST00000269122|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC 72.96794272382148 0.014068588219715357 1 [TA]AG{I|L}{I|L}GV[RN] 10 0 + 64.927 0 0 6.6896 6.6896 87.29 0 0 0 53.95750937337162 10.324609153403514 10.324609153403514 6.5321251377534395 0 2.1237125054200234 0 0 0.3054621874040891 + + [TA]AG{I|L}{I|L}GV[RN];[TA]Q{I|L}{I|L}GV[RN];[TA][KS][VP]V[RN] 6.6896;6.0166;1.0225 +;-;- + 75 + NaN NaN 104786.3 NaN 4726 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6897 38.688 NaN 1046600 35 0 105730 0.261 + 31593 VYIKHPVSL 9 62 528.3159664070681 1054.6173798809361 2 528.3159790039062 MULTI HCD FTMS 0 0 0 6893 360950.53125 0.24859780832031775 -7 0.20222854614257812 4 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 99.75527289724121 0.004270341300239591 1 VY{I|L}KHPVS{I|L} 9 0 + 93.316 0 0 8.8483 8.8483 90.293 0 0 0 5.201564096728063 5.201564096728063 5.201564096728063 5.201564096728063 0 2.822682509756042 2 1.3996498648046138 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};{I|L}[YV]KHPVS{I|L};[VP][HK]{I|L}YVS{I|L};[K{I|L}][YV]HPVS{I|L};[K{I|L}]H[YV]PVS{I|L};[K{I|L}]H[VP]YVS{I|L};[VP]S[H{I|L}]K[YV]{I|L};[VP][HK]{I|L}S[YV]{I|L};[K{I|L}]H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]S{I|L} 8.8483;8.3551;5.1993;4.2828;3.9223;2.9958;2.6402;1.9769;1.9769;1.9085 +;+;-;-;-;-;-;-;-;- + 565 + NaN NaN 238643.4 NaN 4727 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6898 38.692 NaN 248170 35 0 27979 0.261 + 9328 HPRTPYQEL 9 48 570.7934870072348 1139.5724210812696 2 570.79345703125 MULTI HCD FTMS 0 0 0 6893 123134.2578125 0.8500936435035723 3 -0.07948684692382812 5 Unmodified _HPRTPYQEL_ REV__ENSG00000138382|ENST00000260953|METTL5;REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF 13.90604991867851 0.24021115267848145 1 HPV{I|L} 4 -1 34.553 0 0 3.0321 0 0 0 690.2842501275999 690.2842501275999 9.776296993281406 0 0 0 0 0.5 0 0 0 HPV{I|L} 3.0321 - 16 + NaN NaN 121186.4 NaN 4728 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6899 38.695 NaN 274840 35 0 25905 0.261 + 27745 TATKIEITM 9 56 512.2731414816805 1022.5317300301609 2 512.273193359375 MULTI HCD FTMS 0 0 0 6893 116651.140625 0.6244578204012096 -3 0.09283065795898438 6 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 86.33184430468982 0.004622086694044132 1 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 65.512 0 0 6.4068 6.4068 91.009 0 0 0 7.147642715192504 7.927965835756439 7.147642715192504 15.481391379294834 0 2.2302046884880937 0 1.0356668758921828 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[Q{I|L}]{[TV]|[{I|L}S]}{I|L}T{M(Oxidation (M))|F} 6.4068;4.8928;3.7077 +;-;- + 172 + NaN NaN 128045.2 NaN 4729 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6900 38.698 NaN 115840 35 0 12655 0.261 + 8967 HPDYGSHIQAL 11 37 619.3018800834647 1236.5892072337292 2 619.3018798828125 MULTI HCD FTMS 0 0 0 6893 75916.3203125 1 0 0 7 Unmodified _HPDYGSHIQAL_ ENSG00000121691|ENST00000241052|CAT 30.7034409873982 0.19682282685441074 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L} 6 7 29.882 0 0 2.4165 0 0 499.21846205879064 0 499.21846205879064 0 8.428637390930263 0 0 0 0 0 0.9247425010840047 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L} 2.4165 - 57 NaN NaN 105807.7 NaN 4730 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6901 38.702 NaN 99273 35 0 16307 0.261 + -1 INYGGEGQVCV 11 20 598.2736986617595 1194.5328443903188 2 598.274169921875 MULTI HCD FTMS 0 0 0 6893 20155.314453125 0.2920480400572667 15 -0.3667106628417969 8 Carbamidomethyl (C) _INYGGEGQVC(Carbamidomethyl (C))V_ REV__ENST00000570205.1_1_15:83226389-83240190:-|nuORF 2.735195868890462 0.4069250265843076 1 {[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}E 5 -1 19.973 0 0 1.672 0 0 0 573.2923678033811 573.2923678033811 14.488474775526186 0 0 0 0 0 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}E 1.672 - 6 + NaN NaN 97744 NaN 4731 2168 6893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6903 38.707 NaN 207820 35 0 28373 0.327 + 16067 LPSPGEKAL 9 48 456.26334036980285 910.5121278064057 2 456.2633972167969 MULTI HCD FTMS 0 0 0 6902 114253.1640625 0.1909695253253783 -7 0.20218276977539062 1 Unmodified _LPSPGEKAL_ ENSG00000131746|ENST00000254051|TNS4 45.739877483867886 0.03899552410870734 1 {I|L}PSPGEK[{I|L}A] 9 0 + 77.374 0 0 8.4978 8.4978 97.699 0 0 0 68.63675939821889 5.998709199930872 5.998709199930872 77.37388445241912 0 1.805462187404089 1.5228787452803376 0.4247425010840047 0 + + {I|L}PSPGEK[{I|L}A] 8.4978 + + 48 + NaN NaN 123741.4 NaN 4732 2169 6902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6904 38.711 NaN 241870 35 0 45075 0.261 + -1 NLPLPCMLLA 10 43 550.795964060612 1099.577375188024 2 551.2841796875 MULTI HCD FTMS 0 0 0 6902 14851.4345703125 0.05842956646978305 24 -0.5979461669921875 2 Oxidation (M) _NLPLPCM(Oxidation (M))LLA_ REV__ENSG00000184313|ENST00000421030|MROH7;REV__ENST00000440217.5_1_1:55136488-55151982:+|nuORF;REV__nc|ENSG00000184313|Q68CQ1-1|MROH7;REV__nc|ENSG00000184313|Q68CQ1-2|MROH7;REV__nc|ENSG00000184313|Q68CQ1-9|MROH7 6.723162845929126 0.4397169348982109 1 TTTTMTT[{I|L}T] 9 -1 42.317 0 0 3.8485 0 0 130.11755268361986 0 130.11755268361986 0 25.863650028014433 0 0 0 0 0 0.8494850021680094 0 TTTTMTT[{I|L}T] 3.8485 - 547 + NaN NaN 115924.1 NaN 4733 2169 6902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6905 38.715 NaN 56508 35 0 10193 0.261 -1 HPVLKEMEVQ 10 20 613.3159539454991 1224.6173549577982 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6902 37022.0234375 0.2193369448709621 23 -0.5647659301757812 3 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4163302057249 888.4163302057249 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 5 + NaN NaN 93101.3 NaN 4734 2169 6902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6906 38.718 NaN 95972 35 0 4728.5 0.264 + 13346 KYMEDYHQF 9 56 420.84968270577093 1259.5272187175128 3 420.84991455078125 MULTI HCD FTMS 0 0 0 6902 39374.890625 0.9382328335492144 -1 0.02982330322265625 4 Unmodified _KYMEDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 28.233623360808718 0.11935903763491834 1 [YK]MED 5 4 22.479 0 0 1.7847 0 0 0 590.2372235586972 590.2372235586972 18.499934467764874 0 0 0 0 0.9247425010840047 0 0 0.3054621874040891 + [YK]MED 1.7847 + + 34 NaN NaN 103529.4 NaN 4735 2169 6902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6907 38.721 NaN 44918 35 0 11024 0.261 -1 0 32 441.29743767595807 440.2901612093581 1 441.2974548339844 MULTI HCD FTMS 0 0 0 6902 21271.7890625 0.4340814631416669 -24 0.7049217224121094 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103795.1 NaN 4736 2169 6902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6908 38.725 NaN 31910 35 0 3977 0.261 + 13348 KYMEDYHQF 9 20 630.7712430742314 1259.5279332152627 2 630.7716064453125 MULTI HCD FTMS 0 0 0 6902 26942.29296875 1 0 0 6 Unmodified _KYMEDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 11.517880264261096 0.2608444086165286 1 [RH]E 3 8 10.458 0 0 0.83028 0 0 0 834.3017061822874 834.3017061822874 1.5051499783199063 0 0 0 0 0 0 0 0 [RH]E 0.83028 - 5 + NaN NaN 94792.8 NaN 4737 2169 6902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6910 38.73 NaN 600520 35 0 79630 0.327 + 9308 HPQPGAVEL 9 52 474.250840207838 946.487127482476 2 474.2508544921875 MULTI HCD FTMS 0 0 0 6909 356614.0625 0.8591710551963562 1 -0.0264739990234375 1 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 47.748688679222035 0.03472022231463587 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L} 8 2 + 58.734 0 0 6.2055 6.2055 89.045 0 0 0 11.906140654642812 47.77458283468023 11.906140654642812 9.262137858390815 0 1.6989700043360187 0 1.110924374808178 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L};[QP]H[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]{[QN]|[E{I|L}]|[KN]}V;{[QN]|[E{I|L}]|[KN]}[NP][KS]{M(Oxidation (M))|F}{I|L};[QP]H[QP]{[QN]|[E{I|L}]|[KN]}V;{NN|[MP]|[D{I|L}]|[EV]}[QP][KS]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[NP][H{I|L}][QP];[QP]{NN|[MP]|[D{I|L}]|[EV]}[KS]{M(Oxidation (M))|F}{I|L} 6.2055;5.2269;4.5352;2.6861;1.8021;1.385;0.78737;0.71981;0.57171 -;-;-;-;-;-;-;-;- 119 NaN NaN 185328.2 NaN 4738 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6911 38.734 NaN 123080 35 0 17432 0.261 + 33546 YIKHPVSL 8 39 478.78181612622524 955.5490793192505 2 478.7817687988281 MULTI HCD FTMS 0 0 0 6909 61388.26171875 0.7449807148942529 -3 0.08950424194335938 2 Unmodified _YIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 50.855029805455786 0.12247309515496523 1 [Y{I|L}]KH[VP]{[TV]|[{I|L}S]} 8 0 + 53.623 0 0 5.6117 5.6117 92.235 0 0 0 50.32226753704853 15.061668675368622 15.061668675368622 53.62302362186034 0 1.2134679910804405 2 0.9604093769761876 0 + + [Y{I|L}]KH[VP]{[TV]|[{I|L}S]} 5.6117 + + 29 + NaN NaN 103519.3 NaN 4739 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6912 38.738 NaN 88685 35 0 14049 0.261 + 11881 KFFHGNVE 8 35 489.24635725279506 NaN 0 489.2563171386719 PEAK HCD FTMS 0 0 0 6909 2998.307861328125 0.7515321231210884 -1 0.023189544677734375 3 Unmodified _KFFHGNVE_ REV__ENSG00000168137|ENST00000402198|SETD5;REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF;REV__nc|ENSG00000168137|Q9C0A6-2|SETD5;REV__nc|ENSG00000168137|Q9C0A6-3|SETD5 5.230669730166228 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.71581 0 0 113.0630823517209 763.3400972955686 876.4031796472896 0 0 0 0 0 0 0 0 0 P 0.71581 - 7 + NaN NaN 113421.5 NaN 4740 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6913 38.741 NaN 91265 35 0 6714.3 0.261 + 13347 KYMEDYHQF 9 46 420.84968270577093 1259.5272187175128 3 420.8498840332031 MULTI HCD FTMS 0 0 0 6909 41967.078125 1 0 0 4 Unmodified _KYMEDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 20.580933911654288 0.18254163597178805 1 DY 2 7 15.886 0 0 1.2612 0 0 551.2398330044916 427.1738680475219 978.4137010520135 0 0 0 0 0 0.8807196863200843 0 0 0 + DY 1.2612 + + 12 + NaN NaN 116064.6 NaN 4741 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6914 38.745 NaN 15180 35 0 3664.9 0.261 + 14349 LDYESRRLY 9 11 607.8116269947267 1213.6087010562533 2 607.8120727539062 MULTI HCD FTMS 0 0 0 6909 7903.4052734375 0.14045093828826005 15 -0.3666419982910156 5 Unmodified _LDYESRRLY_ ENSG00000040731|ENST00000264463|CDH10 0.9622753412299311 0.3437222896773173 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94884.8 NaN 4742 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6915 38.748 NaN 42365 35 0 5702 0.263 + 10325 ILPLSLTVS 9 30 471.7956041037886 NaN 0 471.79608154296875 PEAK HCD FTMS 0 0 0 6909 9528.408203125 0.770882510514505 1 -0.0264739990234375 6 Unmodified _ILPLSLTVS_ ENST00000420509.1_1_2:206949343-206949463:+|nuORF 0.5247636613948944 0.2927039108006614 1 Q 1 9 3.0989 0 0 0.32912 0 0 673.3599327175398 137.13025842838127 810.490191145921 0 0 0 0 0 0 0 0 0 Q 0.32912 - 1 + NaN NaN 87469.4 NaN 4743 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6916 38.751 NaN 19690 35 0 4522.2 0.261 + -1 GMFYTAMAAAM 11 17 590.7431286167204 NaN 0 590.7424926757812 PEAK HCD FTMS 0 0 0 6909 3422.677734375 0.26053911961255977 -6 0.17568588256835938 7 Oxidation (M) _GMFYTAMAAAM(Oxidation (M))_ REV__tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1 2.9952420565917617 0.33362350433860827 1 A 1 -1 6.9897 0 0 0.59261 0 0 165.04776738793436 940.3639010065061 1105.4116683944405 0 0 0 0 0 0 0 0 0 A 0.59261 + + 1 + NaN NaN 89402.6 NaN 4744 2170 6909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6918 38.756 NaN 465220 35 0 125640 0.327 + 10429 IPCEEGDKL 9 63 502.24183451287786 1002.4691160925557 2 502.2419128417969 MULTI HCD FTMS 0 0 0 6917 320879.9375 0.9948604833312082 -1 0.0264739990234375 1 Unmodified _IPCEEGDKL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 67.83816525789305 0.009787749748478139 1 {I|L}PCEE[DG]K{I|L} 9 0 + 86.08 0 0 8.5868 8.5868 95.706 0 0 0 62.123118091426974 8.657424843733637 8.657424843733637 22.487737688117235 0 2.1989700043360187 1.6989700043360187 1.1237125054200234 0 + + {I|L}PCEE[DG]K{I|L};[{I|L}P]CEE[DG]K{I|L};{[CP]|[EA]}E{I|L}E[DG]K{I|L};{[CP]|[EA]}EE{I|L}[DG]K{I|L};{[CP]|[EA]}EE[DG]{I|L}K{I|L};{[CP]|[EA]}EE[DG]K{I|L}{I|L} 8.5868;6.3436;4.4268;3.4025;2.9037;1.9799 +;+;-;-;-;- + 185 + NaN NaN 152538.6 NaN 4745 2171 6917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6919 38.761 NaN 294690 35 0 117050 0.261 + 8941 HPDQAQAIL 9 35 496.76143455133644 991.5083161694729 2 496.76165771484375 MULTI HCD FTMS 0 0 0 6917 140280.4375 0.5286662047729567 6 -0.12551498413085938 2 Unmodified _HPDQAQAIL_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 18.1463463914782 0.20357593197100715 1 A{I|L}{I|L} 3 6 36.198 0 0 3.6508 0 0 676.2908322637908 0 676.2908322637908 0 33.72363747448347 0 0 0 1 0 0 0 + A{I|L}{I|L} 3.6508 + + 20 NaN NaN 126440.7 NaN 4746 2171 6917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6920 38.764 NaN 95053 35 0 13254 0.261 + 6956 FPVRDGKIKL 10 36 586.8610423864859 1171.7075318397717 2 586.8607788085938 MULTI HCD FTMS 0 0 0 6917 34396.18359375 0.7029016830274042 -4 0.11597824096679688 3 Unmodified _FPVRDGKIKL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 18.373094154950223 0.33925629317698053 1 {I|L}K{I|L} 3 7 31.198 0 0 2.6626 0 0 799.4371758625583 0 799.4371758625583 0 23.239087409443187 0 0 0 0.5 0 0 0 + {I|L}K{I|L} 2.6626 + + 14 NaN NaN 103825 NaN 4747 2171 6917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6921 38.768 NaN 14404 35 0 4399.6 0.261 -1 IMLHHLEAMH 10 13 624.3046148327517 1246.5946767323032 2 624.3052368164062 MULTI HCD FTMS 0 0 0 6917 13754.341796875 0.6669553052758169 -17 0.4956512451171875 4 Oxidation (M) _IMLHHLEAM(Oxidation (M))H_ ENST00000456360.5_1_Y:23556925-23559248:-|nuORF 0.45834013312273997 0.47287763746706196 1 W 1 -1 4.6041 0 0 0.36933 0 0 878.4793946051533 179.01961694888908 1057.4990115540425 0 0 0 0 0 0 0 0 0 W 0.36933 - 4 + NaN NaN 109832.9 NaN 4748 2171 6917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6923 38.773 NaN 833200 35 0 84047 0.327 + 9453 HPVSREWTL 9 82 562.7957015412279 1123.5768501492557 2 562.7958374023438 MULTI HCD FTMS 0 0 0 6922 429543.40625 0.5209997317183165 7 -0.16527557373046875 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 53.40400417844725 0.026808823219830042 1 HPVS 4 5 43.237 0 0 3.8481 0 0 0 700.3440035455686 700.3440035455686 14.83263302592347 0 0 0 0 0.7887254899964358 0 0.7302046884880937 0 + HPVS 3.8481 + + 599 + NaN NaN 217272.3 NaN 4749 2172 6922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6924 38.777 NaN 310900 35 0 23187 0.261 + 82 ADKMDMSL 8 55 492.7042814229636 983.3940099127273 2 492.70428466796875 MULTI HCD FTMS 0 0 0 6922 137082.734375 0.6212783769607444 -34 0.9768524169921875 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 55.50274090549119 0.09370106398411177 1 {M(Oxidation (M))|F}S{I|L} 3 5 31.744 0 0 3.228 0 0 618.2317824856632 0 618.2317824856632 0 13.59042352563845 0 0 0 0.7887254899964358 0 0.3054621874040891 0 + {M(Oxidation (M))|F}S{I|L} 3.228 + + 148 NaN NaN 130658.2 NaN 4750 2172 6922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6925 38.781 NaN 189190 35 0 19224 0.261 + 9361 HPSQLVLTL 9 46 504.2977957027317 1006.5810384722635 2 504.29779052734375 MULTI HCD FTMS 0 0 0 6922 44058.234375 0.019933554887734094 80 -2.1815872192382812 3 Unmodified _HPSQLVLTL_ ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 3.5964929083625545 0.32375295897743744 1 HP 2 7 22.206 0 0 2.2061 0 0 0 769.4439180963499 769.4439180963499 16.721675119240516 0 0 0 0 0.4247425010840047 0 0 0 + HP 2.2061 + + 6 + NaN NaN 113238.1 NaN 4751 2172 6922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6926 38.784 NaN 66836 35 0 21434 0.261 -1 0 26 441.7879131732742 881.5612734133484 2 441.78765869140625 MULTI HCD FTMS 0 0 0 6922 27894.62109375 0.3383267599638829 -15 0.4224853515625 4 NaN NaN 1 N 1 -1 5.4846 0 0 0.62214 0 0 183.15967536822967 581.3429049127561 764.5025802809857 0 0 0 0 0 0 0 0 0 N 0.62214 - 2 + NaN NaN 90526.6 NaN 4752 2172 6922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6927 38.787 NaN 69962 35 0 6941.8 0.261 + 16284 LQPCRYEIS 9 36 554.7752841116742 1107.5360152901483 2 554.7755737304688 MULTI HCD FTMS 0 0 0 6922 22110.734375 0.6408855542747439 5 -0.10903167724609375 5 Unmodified _LQPCRYEIS_ REV__ENST00000467774.1_1_1:40312772-40313274:-|nuORF 3.2813086475875832 0.32614229037259 1 D 1 -1 4.6041 0 0 0.41571 0 0 150.1978182109571 839.2881563775999 989.4859745885569 0 0 0 0 0 0 0 0 0 D 0.41571 - 4 + NaN NaN 88216.7 NaN 4753 2172 6922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6929 38.793 NaN 273140 35 0 44677 0.327 + 35241 YVPGPSVP 8 54 408.2187007736261 NaN 0 408.20635986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YVPGPSVP_ REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;REV__FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;REV__FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;REV__FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;REV__FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;REV__FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 6.354104778181461 0.38822285293237185 1 M 1 -1 5.4846 0 0 0.67343 0 0 552.2909954419804 128.07175623111564 680.362751673096 0 0 0 0 0 0 0 0 0 M 0.67343 - 10 + NaN NaN 134892.4 NaN 4754 2173 6928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6930 38.797 NaN 512070 35 0 48199 0.261 + 27419 SYTSVKENF 9 59 537.7583937408326 1073.5022345484651 2 537.7584838867188 MULTI HCD FTMS 0 0 0 6928 121381.5703125 0.36938207549726704 -5 0.11577224731445312 2 Unmodified _SYTSVKENF_ ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B 45.739877483867886 0.03899552410870734 1 {[{M(Oxidation (M))|F}C]|[YS]}TS[RK]EG{M(Oxidation (M))|F} 9 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 41.458 2.8432 1.1368 3.862 3.862 59.969 0 0 0 0 21.167826217170074 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}C]|[YS]}TS[RK]EG{M(Oxidation (M))|F} 3.862 - 206 + NaN NaN 155852.5 NaN 4755 2173 6928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6931 38.801 NaN 94007 35 0 19681 0.261 + 4972 FAVHPEPEA 9 27 498.74268058322514 995.4708082332503 2 498.74310302734375 MULTI HCD FTMS 0 0 0 6928 41589.00390625 0.8161305829169618 1 -0.02307891845703125 3 Unmodified _FAVHPEPEA_ ENSG00000111845|ENST00000379568|PAK1IP1 25.399314129420986 0.14091189997036632 1 [EP]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HV]EA 9 6 + 44.951 0 0 4.5156 4.5156 87.441 0 0 0 9.946049681132934 22.019309113210497 9.946049681132934 13.578409410397466 0 0.8807196863200843 1.3010299956639813 0 0 [EP]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HV]EA;{[MS]|[{M(Oxidation (M))|F}A]}[HV][EP]PEA;{[CP]|[EA]}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HV]EA 4.5156;3.1515;2.5065 -;+;- + 32 NaN NaN 107090 NaN 4756 2173 6928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6932 38.804 NaN 120550 35 0 28280 0.261 + 8628 HEERLYSTL 9 35 574.2907481779872 1146.5669434227743 2 574.2916259765625 MULTI HCD FTMS 0 0 0 6928 28866.193359375 0.006533927679863456 119 -3.2508773803710938 4 Unmodified _HEERLYSTL_ REV__ENSG00000152133|ENST00000674370|GPATCH11;REV__nc|ENSG00000152133|Q8N954-2|GPATCH11;REV__nc|ENSG00000152133|Q8N954|GPATCH11 16.149105407346934 0.22083165093524068 1 V{I|L}T 3 -1 31.198 0 0 2.721 0 0 815.3535023419937 0 815.3535023419937 0 9.030899869919438 0 0 0 0.5 0 0 0 V{I|L}T 2.721 - 20 NaN NaN 101231.6 NaN 4757 2173 6928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6933 38.807 NaN 38238 35 0 7685.6 0.261 + -1 CDTGDMPPDL 10 21 568.7152748100173 1135.4159966868344 2 568.716064453125 MULTI HCD FTMS 0 0 0 6928 10596.7177734375 0.30058143226163736 -5 0.11577224731445312 5 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DTGDM(Oxidation (M))PPDL_ REV__ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant;REV__ENSG00000145808|ENST00000274487|ADAMTS19;REV__nc|ENSG00000145808|Q8TE59|ADAMTS19 3.2813086475875832 0.45793521633868084 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86444.9 NaN 4758 2173 6928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6934 38.811 NaN 29633 35 0 6998.2 0.261 + -1 YMKWIDPY 8 21 566.2640610092964 NaN 0 566.2601928710938 PEAK HCD FTMS 0 0 0 6928 7798.77734375 1 0 0 6 Oxidation (M) _YM(Oxidation (M))KWIDPY_ REV__ENSG00000048392|ENST00000251810|RRM2B;REV__nc|ENSG00000048392|Q7LG56-6|RRM2B 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84980.7 NaN 4759 2173 6928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6936 38.816 NaN 285680 35 0 27855 0.327 + 199 AETVRYSMCT 10 67 580.756873986535 1159.4991950398698 2 580.75732421875 MULTI HCD FTMS 0 0 0 6935 161176 0.0983173307505941 14 -0.3634452819824219 1 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 12.240655878213236 0.39661705172222156 1 [YR]{I|L}EGTS 7 8 55.985 0 0 4.8283 0 0 0 350.0838870512965 350.0838870512965 31.312572134758632 0 0 0 0 2.3505762035186217 0 0.7742275032520141 0 [YR]{I|L}EGTS 4.8283 - 227 NaN NaN 116387 NaN 4760 2174 6935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6937 38.82 NaN 156580 35 0 23246 0.261 + 4242 EVFSPPGSDR 10 49 545.761665186123 1089.5087774390458 2 545.7617797851562 MULTI HCD FTMS 0 0 0 6935 48409.3671875 0.6900594297130747 -7 0.17534255981445312 2 Unmodified _EVFSPPGSDR_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 18.373094154950223 0.33925629317698053 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SP 5 5 44.565 0 0 4.0904 0 0 0 527.2213228815061 527.2213228815061 30.026975159433533 0 0 0 0 0.7742275032520141 2 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SP 4.0904 + + 74 + NaN NaN 127667.4 NaN 4761 2174 6935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6938 38.824 NaN 85387 35 0 7881.7 0.261 -1 MPTTERVTL 9 41 532.2762202172897 1062.5378875013794 2 532.2758178710938 MULTI HCD FTMS 0 0 0 6935 35800.234375 0.5266697208038924 -6 0.13885116577148438 3 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 15.248480904072842 0.22861284681709862 1 TT[EP] 4 -1 23.188 0 0 2.1823 0 0 616.3549061505875 0 616.3549061505875 0 4.6040937697618745 0 0 0 0.5 0 0.5 0 TT[EP] 2.1823 - 14 NaN NaN 95922.9 NaN 4762 2174 6935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6940 38.829 NaN 2316700 35 0 239830 0.327 + 31594 VYIKHPVSL 9 82 528.3159664070681 1054.6173798809361 2 528.3162231445312 MULTI HCD FTMS 0 0 0 6939 1451945.75 1 0 0 1 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 118.0683919894846 0.0016252157255221692 1 VY{I|L}KHPVS{I|L} 9 0 + 106.43 0 0 10.092 10.092 97.075 0 0 0 21.44688818533851 21.44688818533851 21.44688818533851 21.44688818533851 0 2.778659694992122 2 1.7249073637206092 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};[YV]{I|L}KHPVTV;[YV]{I|L}KHPSV{I|L};[YV]{I|L}KHPS{I|L}V;[VP]HK{I|L}YVS{I|L};{I|L}[YV]KHPVS{I|L};[VP]HK{I|L}YVTV;[VP]HK{I|L}YSV{I|L};[VP]HK{I|L}SYV{I|L} 10.092;8.058;7.2779;7.2446;6.4645;5.6251;5.492;4.8451;4.8117;4.3939 +;+;-;-;-;-;-;-;-;- + 1135 + NaN NaN 452107.1 NaN 4763 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6941 38.833 NaN 747160 35 0 93007 0.261 + 16068 LPSPGEKAL 9 59 456.26334036980285 910.5121278064057 2 456.263427734375 MULTI HCD FTMS 0 0 0 6939 488375.28125 0.8162994557414787 -1 0.01319122314453125 2 Unmodified _LPSPGEKAL_ ENSG00000131746|ENST00000254051|TNS4 83.42873516780209 0.004742894019233849 1 {I|L}PSPGEKA{I|L} 9 0 + 100.38 0 0 11.024 11.024 97.518 0 0 0 66.72843712902285 13.46787486224656 13.46787486224656 22.246687923431097 0 2.1307196863200843 1.6989700043360187 1.1549471895720984 0 + + {I|L}PSPGEKA{I|L};[{I|L}P]SNS{I|L}PA{I|L};[{I|L}P]SNSA{I|L}P{I|L};[{I|L}P]SNS{I|L}AP{I|L};[{I|L}P]SNSAP{I|L}{I|L};{I|L}PSP[{I|L}A][NS]{I|L};[{I|L}P]SGGS{I|L}PA{I|L};[{I|L}P]SGGSA{I|L}P{I|L};[{I|L}P]SGGS{I|L}AP{I|L};[{I|L}P]SGGSAP{I|L}{I|L} 11.024;8.5811;8.5748;8.439;8.3611;7.59;7.5697;7.5635;7.4276;7.3498 +;-;-;-;-;-;-;-;-;- + 537 + NaN NaN 187723 NaN 4764 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6942 38.837 NaN 703820 35 0 56995 0.261 + 27420 SYTSVKENF 9 74 537.7583937408326 1073.5022345484651 2 537.758544921875 MULTI HCD FTMS 0 0 0 6939 276990 0.842921547551041 -3 0.056072235107421875 3 Unmodified _SYTSVKENF_ ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B 90.13494162714682 0.004522430935000059 1 {[{M(Oxidation (M))|F}C]|[YS]}TSVKGEG{M(Oxidation (M))|F} 10 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 59.234 2.8432 1.1368 5.5178 5.5178 62.46 0 0 0 0 41.274820510260746 0 0 0 1.1237125054200234 0 1.055462187404089 0 {[{M(Oxidation (M))|F}C]|[YS]}TSVKGEG{M(Oxidation (M))|F} 5.5178 - 938 + NaN NaN 194303.4 NaN 4765 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6943 38.84 NaN 401180 35 0 28996 0.261 + 27746 TATKIEITM 9 61 512.2731414816805 1022.5317300301609 2 512.2731323242188 MULTI HCD FTMS 0 0 0 6939 157387.140625 0.8425261019076826 4 -0.10920333862304688 4 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 96.36657018975838 0.004359138328518304 1 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 73.865 0 0 7.2237 7.2237 93.906 0 0 0 10.088395638160378 10.088395638160378 10.088395638160378 26.76046029469326 0 2.0994850021680094 1.154901959985743 0.9436726795685342 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[Q{I|L}]{[TV]|[{I|L}S]}{I|L}T{M(Oxidation (M))|F} 7.2237;4.6066;4.2455 +;-;- + 252 + NaN NaN 152104.7 NaN 4766 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6944 38.844 NaN 109140 35 0 13066 0.261 + 20833 PHVDEFLQR 9 26 570.7934870072348 1139.5724210812696 2 570.7933959960938 MULTI HCD FTMS 0 0 0 6939 56927.62109375 0.3930166120403907 10 -0.2676124572753906 5 Unmodified _PHVDEFLQR_ ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000144677|ENST00000273179|CTDSPL;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL 6.723162845929126 0.3000504726104499 1 HPV 3 8 31.198 0 0 2.7377 0 0 0 803.3686788324233 803.3686788324233 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.7377 - 6 + NaN NaN 89698.2 NaN 4767 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6945 38.847 NaN 38844 35 0 5542.5 0.261 + 8968 HPDYGSHIQAL 11 20 619.3018800834647 1236.5892072337292 2 619.3016967773438 MULTI HCD FTMS 0 0 0 6939 27723.416015625 0.3651838748441052 7 -0.1915283203125 6 Unmodified _HPDYGSHIQAL_ ENSG00000121691|ENST00000241052|CAT 5.296884461304476 0.39569033063702824 1 A 1 10 6.9897 0 0 0.56524 0 0 149.1082569537951 1013.4215981626129 1162.529855116408 0 0 0 0 0 0 0 0 0 + A 0.56524 + + 2 + NaN NaN 85286.7 NaN 4768 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6946 38.85 NaN 265590 35 0 37019 0.262 + 10253 IIQSREPSL 9 51 521.7981380934764 1041.5817232537527 2 521.798095703125 MULTI HCD FTMS 0 0 0 6939 32143.66015625 0.24416481028334092 -6 0.12221908569335938 7 Unmodified _IIQSREPSL_ BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;ENSG00000137948|ENST00000399546|BRDT;ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000137948|Q58F21-2|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4 41.95555342248728 0.056367691549927025 1 {I|L}{I|L}Q 3 6 34.309 0 0 3.2939 0 0 0 684.3323695762714 684.3323695762714 11.249387366082999 0 0 0 0 0.9247425010840047 2 0 0 + {I|L}{I|L}Q 3.2939 + + 47 NaN NaN 126424 NaN 4769 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6947 38.854 NaN 112980 35 0 14513 0.261 + 30856 VQNYVLTLMN 10 32 597.8130841336915 1193.611615334183 2 597.8130493164062 MULTI HCD FTMS 0 0 0 6939 21385.17578125 0.044912580604004666 110 -3.0136451721191406 8 Unmodified _VQNYVLTLMN_ ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 3.2813086475875832 0.45793521633868084 1 K 1 10 8.0989 0 0 0.67852 0 0 504.2251540078142 558.2711886041624 1062.4963426119766 0 0 0 0 0 0.3494850021680094 0 0 0 K 0.67852 - 4 + NaN NaN 99438.3 NaN 4770 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6948 38.857 NaN 34015 35 0 4445.4 0.261 -1 TPFNTREPVM 10 23 604.2923568564806 1206.5701607797612 2 604.2921752929688 MULTI HCD FTMS 0 0 0 6939 8040.01416015625 0.17661807369902677 -3 0.056072235107421875 9 Oxidation (M) _TPFNTREPVM(Oxidation (M))_ ENSG00000242574|ENST00000418107|HLA-DMB 10.898955630103616 0.4091668631510381 1 T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NT 5 -1 19.208 0 0 1.592 0 0 0 643.2900484674436 643.2900484674436 0.4845500650402812 0 0 0 0 0 0 0 0 T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NT 1.592 + + 12 + NaN NaN 87338.4 NaN 4771 2175 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6950 38.862 NaN 362170 35 0 75472 0.327 + 35247 YVQKHNIQA 9 51 550.795964060612 1099.577375188024 2 551.284423828125 MULTI HCD FTMS 0 0 0 6949 17551.220703125 0.06905125641862461 31 -0.813690185546875 1 Unmodified _YVQKHNIQA_ ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF;nc|ENSG00000108946|P10644-2|PRKAR1A 3.944395688203298 0.32111559684428237 1 TTTTMTT[{I|L}T] 9 9 39.563 0 0 3.598 0 0 130.1142133989087 0 130.1142133989087 0 30.711244098130457 0 0 0 0 0 0.8494850021680094 0 TTTTMTT[{I|L}T] 3.598 - 607 + NaN NaN 131149.1 NaN 4772 2176 6949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6951 38.867 NaN 259220 35 0 26875 0.261 + 1539 AYVHMVTHF 9 63 560.7657570063983 1119.5169610795965 2 560.7657470703125 MULTI HCD FTMS 0 0 0 6949 103706.2890625 0.10564336581814145 66 -1.8144340515136719 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 92.8221339359638 0.0044520161739443126 1 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 77.362 0 0 6.9103 6.9103 86.523 0 0 0 3.82068444291761 3.82068444291761 3.82068444291761 3.82068444291761 0 2.353917193908117 2 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}WH{[QV]|[N{I|L}]|[RA]|[KV]}Q[{M(Oxidation (M))|F}E];{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}WH{[QV]|[N{I|L}]|[RA]|[KV]}[AG][{M(Oxidation (M))|F}E];{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F} 6.9103;6.569;5.8393;4.7058;3.6289;3.5663;2.5568;1.7016;1.435 +;+;-;-;-;-;-;-;- + 575 + NaN NaN 116327.5 NaN 4773 2176 6949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6952 38.87 NaN 59175 35 0 5830.3 0.261 -1 HPVLKEMEVQ 10 31 613.3159539454991 1224.6173549577982 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6949 25212.060546875 0.14936883024745615 30 -0.7872848510742188 3 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4116304986936 888.4116304986936 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 4 + NaN NaN 94733.5 NaN 4774 2176 6949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6953 38.873 NaN 43299 35 0 5003.8 0.263 + 23220 RFTTEEAL 8 26 483.74816940671303 965.4817858802261 2 483.7478332519531 MULTI HCD FTMS 0 0 0 6949 16531.16796875 0.3255399513041509 10 -0.260955810546875 4 Unmodified _RFTTEEAL_ CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2 11.640296217721598 0.50814828952472 1 A{I|L} 2 6 22.206 0 0 2.3 0 0 763.3498402326187 0 763.3498402326187 0 0.9691001300805624 0 0 0 0.4247425010840047 0 0 0 + A{I|L} 2.3 + + 6 NaN NaN 84679.8 NaN 4775 2176 6949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6954 38.877 NaN 49392 35 0 8161.5 0.261 -1 QPDEEPMDM 9 30 554.2017676845397 1106.3889824358794 2 554.2017822265625 MULTI HCD FTMS 0 0 0 6949 10583.4873046875 0.5465727251737762 2 -0.03966522216796875 5 Oxidation (M) _QPDEEPM(Oxidation (M))DM_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 8.155526934196011 0.2891920862272901 1 DM 2 -1 25.969 0 0 2.3472 0 0 842.3123646466812 0 842.3123646466812 0 25.969100130080562 0 0 0 0.5 0 0 0 DM 2.3472 + + 3 NaN NaN 91162.7 NaN 4776 2176 6949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6956 38.882 NaN 182900 35 0 23226 0.327 + 9309 HPQPGAVEL 9 34 474.250840207838 946.487127482476 2 474.25079345703125 MULTI HCD FTMS 0 0 0 6955 80216.1015625 0.1932603334261144 8 -0.21465301513671875 1 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 32.78568957990786 0.09846250359632436 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L} 8 2 + 47.184 0 0 4.9852 4.9852 86.965 0 0 0 4.6040937697618745 47.18433447093204 4.6040937697618745 9.262137858390808 0 1.6549471895720984 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L} 4.9852;4.0066 -;- 40 NaN NaN 112293.3 NaN 4777 2177 6955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6957 38.886 NaN 275670 35 0 23091 0.261 + 34520 YPGQPHPAL 9 61 490.25338698706804 978.4922210409361 2 490.2530517578125 MULTI HCD FTMS 0 0 0 6955 100821.9765625 0.333540018765807 -4 0.08922958374023438 2 Unmodified _YPGQPHPAL_ ENSG00000114315|ENST00000232424|HES1 50.855029805455786 0.030374663808198754 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QGAY 6 5 43.875 0 0 4.484 0 0 0 296.1611057147625 296.1611057147625 35.67069316414013 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0.3252574989159953 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QGAY 4.484 - 212 NaN NaN 126590.7 NaN 4778 2177 6955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6958 38.89 NaN 110600 35 0 15247 0.261 + 33547 YIKHPVSL 8 28 478.78181612622524 955.5490793192505 2 478.7815856933594 MULTI HCD FTMS 0 0 0 6955 55380.078125 0.6720680637852431 4 -0.10882568359375 3 Unmodified _YIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 34.10243960390752 0.30669083636501265 1 [Y{I|L}]KH[VP]{[TV]|[{I|L}S]} 8 0 + 47.056 0 0 4.9245 4.9245 90.807 0 0 0 47.05645316481359 9.264771768807591 9.264771768807591 47.05645316481359 0 1.2614393726401687 2 0.3807196863200844 0 + + [Y{I|L}]KH[VP]{[TV]|[{I|L}S]} 4.9245 + + 17 + NaN NaN 118972.3 NaN 4779 2177 6955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6959 38.893 NaN 149430 35 0 16894 0.261 + 25088 SADPYEREDL 10 45 597.7672180178372 NaN 0 597.7673950195312 PEAK HCD FTMS 0 0 0 6955 35626.85546875 1 0 0 4 Unmodified _SADPYEREDL_ ENSG00000183876|ENST00000328668|ARSI;nc|ENSG00000183876|Q5FYB1-2|ARSI 7.101721422024254 0.3341061997659158 1 D 1 9 11.99 0 0 1.0046 0 0 158.06839148836144 917.4003896514209 1075.4687811397823 0 0 0 0 0 0.5 0 0 0 + D 1.0046 + + 13 + NaN NaN 117386 NaN 4780 2177 6955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6960 38.897 NaN 46845 35 0 7533 0.261 + 20944 PLDKEKGETL 10 33 565.3088309306612 NaN 0 565.3089599609375 PEAK HCD FTMS 0 0 0 6955 6187.57080078125 0.37563256844129683 1 -0.0198211669921875 5 Unmodified _PLDKEKGETL_ ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1 1.1933415558491238 0.33916295405077446 1 R 1 10 0.71334 0 0 0.063205 0 0 581.7459444767536 387.72944055728755 969.4753850340412 0 0 0 0 0 0 0 0 0 R 0.063205 - 1 + NaN NaN 82813.1 NaN 4781 2177 6955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6962 38.902 NaN 1445000 35 0 135820 0.327 + 18924 NAFKEITTM 9 79 535.7628626719894 1069.5111724107787 2 535.7630615234375 MULTI HCD FTMS 0 0 0 6961 598826.6875 0.3477614435521888 -3 0.07278060913085938 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 168.5375213894962 4.622051367253751E-09 1 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 118.99 0 0 11.125 11.125 93.267 0 0 0 8.922815857436532 8.922815857436532 8.922815857436532 8.922815857436532 0 3.079689690656103 1.5228787452803376 1.7658715643802767 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}{[SA]|[TG]}V{I|L}TT{M(Oxidation (M))|F};N{M(Oxidation (M))|F}AKE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QG]|[NA]}E{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}{[SA]|[TG]}T[{I|L}V]T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))K]V{I|L}TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}V{I|L}TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}CK[VG]{I|L}TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F} 11.125;10.291;8.6334;8.0336;5.5518;5.5014;4.8998;4.8456;4.8308;2.4381 +;+;-;-;-;-;-;-;-;- + 994 + NaN NaN 296783.4 NaN 4782 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6963 38.906 NaN 485410 35 0 48521 0.261 + 9454 HPVSREWTL 9 67 562.7957015412279 1123.5768501492557 2 562.7958374023438 MULTI HCD FTMS 0 0 0 6961 214774.828125 0.26050365621919624 13 -0.3466033935546875 2 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 41.95555342248728 0.056367691549927025 1 HPVS 4 5 40.503 0 0 3.6048 0 0 0 700.3434542291624 700.3434542291624 7.4434157707161575 0 0 0 0 0.5 0 0.7059771852360797 0 + HPVS 3.6048 + + 142 + NaN NaN 159929.9 NaN 4783 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6964 38.91 NaN 257760 35 0 69184 0.261 + 10430 IPCEEGDKL 9 48 502.24183451287786 1002.4691160925557 2 502.241943359375 MULTI HCD FTMS 0 0 0 6961 170069.703125 0.5272863999200094 6 -0.17168426513671875 3 Unmodified _IPCEEGDKL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 51.41523569358685 0.02959097413485123 1 {I|L}PCEE[DG]K{I|L} 9 0 + 74.676 0 0 7.4492 7.4492 93.568 0 0 0 59.26985621489237 7.15227486541373 7.15227486541373 19.363044005075736 0 2.1549471895720984 1.5228787452803376 0.805462187404089 0 + + {I|L}PCEE[DG]K{I|L};[{I|L}P]CEE[DG]K{I|L} 7.4492;5.5177 +;+ + 73 + NaN NaN 124146.6 NaN 4784 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6965 38.913 NaN 131760 35 0 51725 0.261 -1 GMLVSMPLL 9 25 496.76143455133644 991.5083161694729 2 496.7615051269531 MULTI HCD FTMS 0 0 0 6961 39889.6171875 0.15032953207293587 13 -0.3466033935546875 4 2 Oxidation (M) _GM(Oxidation (M))LVSM(Oxidation (M))PLL_ FLT4|p.T195M|1|0.51|ENSG00000037280|chr5:180630035-180630035|G/A|missense_variant 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6192 0 0 747.3300830646143 0 747.3300830646143 0 20.28273777167044 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6192 + + 9 NaN NaN 98217.1 NaN 4785 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6966 38.916 NaN 115360 35 0 18456 0.261 + 28845 TVIEREDGL 9 39 516.2721431360471 1030.5297333388942 2 516.2723999023438 MULTI HCD FTMS 0 0 0 6961 54018.65625 0.5735692328647511 -1 0.0198211669921875 5 Unmodified _TVIEREDGL_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 16.149105407346934 0.22083165093524068 1 S{I|L} 2 8 19.949 0 0 1.9358 0 0 812.4026020460254 0 812.4026020460254 0 6.9897000433601875 0 0 0 0.3494850021680094 0 0 0 S{I|L} 1.9358 - 8 NaN NaN 99144.9 NaN 4786 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6967 38.92 NaN 68552 35 0 13349 0.261 + 6957 FPVRDGKIKL 10 28 586.8610423864859 1171.7075318397717 2 586.8613891601562 MULTI HCD FTMS 0 0 0 6961 43328.0234375 0.8854278996813905 3 -0.0890045166015625 6 Unmodified _FPVRDGKIKL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 17.44264345198275 0.3479594151168503 1 P[KG]{I|L}K{I|L} 6 4 38.148 0 0 3.2558 0 0 517.2494374005875 0 517.2494374005875 0 38.148350154927826 0 0 0 1.274227503252014 0 0 0 P[KG]{I|L}K{I|L} 3.2558 - 24 NaN NaN 89579.2 NaN 4787 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6968 38.923 NaN 32831 35 0 5640.8 0.261 -1 0 20 635.3250637300837 634.3177872634836 1 635.3251342773438 MULTI HCD FTMS 0 0 0 6961 21492.34375 0.7017555942823533 5 -0.14188766479492188 7 NaN NaN 1 S{I|L} 2 -1 22.959 0 0 3.6194 0 0 416.19175917793126 0 416.19175917793126 0 11.721675119240516 0 0 0 0 0 0.5 0 S{I|L} 3.6194 - 2 NaN NaN 86093.5 NaN 4788 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6969 38.926 NaN 38408 35 0 7576.2 0.262 + 1317 AYNQFINTN 9 22 542.7578112809886 1083.501069628777 2 542.7586669921875 MULTI HCD FTMS 0 0 0 6961 15261.4287109375 0.5935625046717159 -4 0.08597183227539062 8 Unmodified _AYNQFINTN_ REV__ENSG00000174485|ENST00000443035|DENND4A;REV__nc|ENSG00000174485|Q7Z401-2|DENND4A;REV__nc|ENSG00000174485|Q7Z401|DENND4A 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99419.6 NaN 4789 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6970 38.93 NaN 130930 35 0 24363 0.261 + 14919 LLDCFGIPVL 10 41 545.306043124845 1088.59753331649 2 545.3062744140625 MULTI HCD FTMS 0 0 0 6961 17764.0390625 0.5349491935226784 3 -0.0890045166015625 9 Unmodified _LLDCFGIPVL_ ENSG00000110660|ENST00000525815|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;nc|ENSG00000110660|Q8IXU6-3|SLC35F2 10.073929032068715 0.4168838835836452 1 S[W{I|L}][VP]{I|L} 6 6 16.087 0 0 1.4778 0 0 375.1789723126969 0 375.1789723126969 0 1.394615430168999 0 0 0 0.3807196863200844 0 0.5 0 S[W{I|L}][VP]{I|L} 1.4778 - 24 NaN NaN 99680.8 NaN 4790 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6971 38.933 NaN 29782 35 0 4194.3 0.261 + 8683 HFMSILHHCL 10 23 619.3018800834647 1236.5892072337292 2 619.3032836914062 MULTI HCD FTMS 0 0 0 6961 20273.3984375 0.2670492768096122 10 -0.27747344970703125 10 Unmodified _HFMSILHHCL_ ENSG00000100592|ENST00000360909|DAAM1;ENST00000556894.1_1_14:59791074-59792827:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92034.8 NaN 4791 2178 6961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6973 38.938 NaN 321490 35 0 32305 0.327 + 83 ADKMDMSL 8 63 492.7042814229636 983.3940099127273 2 492.704345703125 MULTI HCD FTMS 0 0 0 6972 208346.453125 0.9442556484825575 -27 0.7405624389648438 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 67.83816525789305 0.03219022055258227 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 52.912 0 0 5.3806 0 0 228.07458693672032 0 228.07458693672032 0 33.895840698003 0 0 0 1.6989700043360187 0 0.3807196863200844 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.3806 + + 76 NaN NaN 132787.7 NaN 4792 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6974 38.943 NaN 242010 35 0 39959 0.261 -1 VYTRHMTWI 9 39 408.20603883039854 1221.5962870913957 3 408.2061767578125 MULTI HCD FTMS 0 0 0 6972 91475.875 0.8058599930762554 8 -0.21136474609375 2 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 16.565877749689598 0.21723083036893404 1 VY 2 -1 41.766 0 0 3.419 0 0 0 956.4414558209874 956.4414558209874 15.796896906561031 0 0 0 0 0.3807196863200844 2 0 0 VY 3.419 + + 16 + NaN NaN 123317.8 NaN 4793 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6975 38.946 NaN 253560 35 0 48987 0.261 + 22522 QSAPQLADAL 10 54 507.26677489029333 1012.5189968473867 2 507.266845703125 MULTI HCD FTMS 0 0 0 6972 99612.9140625 1 0 0 3 Unmodified _QSAPQLADAL_ REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF 16.565877749689598 0.3561603856738253 1 {[QG]|[NA]}T[QP]{I|L}ADA{I|L} 10 -1 + 59.033 0 0 5.8304 5.8304 84.172 0 0 0 21.873628753260945 52.04373855706727 21.873628753260945 3.0102999566398125 0 0.4247425010840047 1.154901959985743 0.3807196863200844 0.3054621874040891 {[QG]|[NA]}T[QP]{I|L}ADA{I|L};{[QG]|[NA]}T[QP]A{I|L}DA{I|L};{[QG]|[NA]}T[QP]AD{I|L}A{I|L};{[QG]|[NA]}T[QP]ADA{I|L}{I|L};{[QG]|[NA]}[QA][TP]{I|L}DA{I|L};{[QG]|[NA]}[QA][TP]D{I|L}A{I|L};{[QG]|[NA]}[QA][TP]DA{I|L}{I|L} 5.8304;5.533;5.3591;4.4684;3.6597;3.4858;2.5951 -;-;-;-;-;-;- 198 NaN NaN 130126.9 NaN 4794 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6976 38.949 NaN 282090 35 0 39381 0.261 -1 LNCTLEQMDL 10 48 598.2724543926658 NaN 0 598.2903442382812 PEAK HCD FTMS 0 0 0 6972 11803.2001953125 0.4950697731649185 2 -0.052581787109375 4 Oxidation (M) _LNCTLEQM(Oxidation (M))DL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|9|1|sense 5.731851221503515 0.33527861879838866 1 EH{M(Oxidation (M))|F} 3 -1 19.693 0 0 1.6486 0 0 131.05824167416182 647.2799501932109 778.3381918673726 0 0 0 0 0 0 0 0.3494850021680094 0 EH{M(Oxidation (M))|F} 1.6486 - 67 + NaN NaN 126235.8 NaN 4795 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6977 38.953 NaN 187540 35 0 22524 0.262 + 20807 PHKIVVWE 8 49 504.28610150523207 NaN 0 504.29840087890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PHKIVVWE_ REV__ENSG00000162065|ENST00000646147|TBC1D24;REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24 2.302733041254933 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.69442 0 0 137.0361686719836 769.4401949518186 906.4763636238022 0 0 0 0 0 0 0 0 0 P 0.69442 + + 4 + NaN NaN 117310.3 NaN 4796 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6978 38.956 NaN 55424 35 0 18183 0.261 -1 0 25 441.7879131732742 881.5612734133484 2 441.7879333496094 MULTI HCD FTMS 0 0 0 6972 19100.80859375 0.2316688462085494 -8 0.18175888061523438 6 NaN NaN 1 VY 2 -1 5.5732 0 0 0.6322 0 0 468.34116340533905 148.06238733463127 616.4035507399703 0 0 0 0 0 0 0 0 0 VY 0.6322 - 8 + NaN NaN 92348.2 NaN 4797 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6979 38.959 NaN 131160 35 0 9208.7 0.261 + 23090 RENIHPYRKEL 11 58 485.600076848794 NaN 0 485.6000061035156 PEAK HCD FTMS 0 0 0 6972 23940.236328125 0.8005787988170867 -1 0.0364227294921875 7 Unmodified _RENIHPYRKEL_ ENSG00000181544|ENST00000650831|FANCB 2.843284757254958 0.33405456343542356 1 S 1 11 8.9794 0 0 0.92649 0 0 242.75879519973802 636.3721407525999 879.130935952338 0 0 0 0 0 0 0 0.3494850021680094 0 S 0.92649 - 17 + NaN NaN 115045.5 NaN 4798 2179 6972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6981 38.968 NaN 787180 35 0 82158 0.327 + 31595 VYIKHPVSL 9 65 528.3159664070681 1054.6173798809361 2 528.316162109375 MULTI HCD FTMS 0 0 0 6980 380557.625 0.26210182095302115 5 -0.13195037841796875 1 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 99.75527289724121 0.004270341300239591 1 VY{I|L}KHPVS{I|L} 9 0 + 91.643 0 0 8.6897 8.6897 91.566 0 0 0 8.96972758783437 8.96972758783437 8.96972758783437 8.96972758783437 0 2.6866654986684733 2 1.3684151806525389 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};{I|L}[YV]KHPVS{I|L};[VP][HK]{I|L}YVS{I|L};[VP][HK]{I|L}S[YV]{I|L};[VP]SKH{I|L}[YV]{I|L};[VP]S[H{I|L}]K[YV]{I|L};[VP][HK]S{I|L}[YV]{I|L} 8.6897;7.8392;4.6634;4.4666;2.6361;2.4662;2.3772;2.3506 +;+;-;-;-;-;-;- + 421 + NaN NaN 200222 NaN 4799 2180 6980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6982 38.972 NaN 175990 35 0 17030 0.261 + 200 AETVRYSMCT 10 53 580.756873986535 1159.4991950398698 2 580.7574462890625 MULTI HCD FTMS 0 0 0 6980 112436.359375 0.06858615881436775 20 -0.527252197265625 2 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 8.155526934196011 0.43213520406898465 1 STGE 4 9 40.477 0 0 3.4909 0 0 353.1069595976074 429.2258700006469 782.3328295982543 0 0 0 0 0 1.7302046884880937 0 0.4247425010840047 0 STGE 3.4909 - 73 + NaN NaN 112521.1 NaN 4800 2180 6980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6983 38.976 NaN 174350 35 0 10564 0.262 -1 MPSPVSPKL 9 46 486.2650721613607 970.5155913895214 2 486.2650451660156 MULTI HCD FTMS 0 0 0 6980 44195.69921875 0.7557276393176121 -1 0.026458740234375 3 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 29.84058131909904 0.11198220037953927 1 {M(Oxidation (M))|F}PS[VP]SP[K{I|L}] 9 -1 + 35.468 0 0 3.6545 3.6545 87.94 0 0 0 26.00379364601566 3.652792693512417 3.652792693512417 24.81598676046126 0 1.2614393726401687 0 0 0 {M(Oxidation (M))|F}PS[VP]SP[K{I|L}];[KP]{[MG]|[TS]}{I|L}{I|L}SPE 3.6545;1.0975 +;- + 69 + NaN NaN 109495.1 NaN 4801 2180 6980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6984 38.979 NaN 60030 35 0 13060 0.261 + -1 CDTGDMPPDL 10 23 568.7152748100173 1135.4159966868344 2 568.7155151367188 MULTI HCD FTMS 0 0 0 6980 25635.150390625 0.7271544251156311 2 -0.055866241455078125 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DTGDM(Oxidation (M))PPDL_ REV__ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant;REV__ENSG00000145808|ENST00000274487|ADAMTS19;REV__nc|ENSG00000145808|Q8TE59|ADAMTS19 5.731851221503515 0.44496410492002586 1 PD{I|L} 3 -1 13.429 0 0 1.1827 0 0 792.2419164773356 0 792.2419164773356 0 13.428637390930264 0 0 0 0.7742275032520141 0 0 0 PD{I|L} 1.1827 + + 4 + NaN NaN 90834.7 NaN 4802 2180 6980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6985 38.982 NaN 108620 35 0 23457 0.261 + 9122 HPGVWRLWP 9 31 574.3106805042866 NaN 0 574.291748046875 PEAK HCD FTMS 0 0 0 6980 6769.6064453125 0.5332016240470339 -1 0.026458740234375 5 Unmodified _HPGVWRLWP_ ENST00000374358.4_1_1:25664819-25664873:+|nuORF 2.0597508629832335 0.2852655770354268 1 TV 2 8 12.831 0 0 1.119 0 0 131.13484151384165 812.3348199174458 943.4696614312875 0 0 0 0 0 0 0 0.4247425010840047 0 TV 1.119 - 8 + NaN NaN 96881.7 NaN 4803 2180 6980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6986 38.986 NaN 21988 35 0 3861.9 0.261 + 1813 CRLNELHCIF 10 19 624.3046148327517 1246.5946767323032 2 624.3043823242188 MULTI HCD FTMS 0 0 0 6980 13962.5517578125 0.6770515163566035 -8 0.19173431396484375 6 Unmodified _CRLNELHCIF_ REV__ENST00000525674.5_1_6:133065623-133070889:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91524.2 NaN 4804 2180 6980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6988 38.991 NaN 450830 35 0 58443 0.327 + 16069 LPSPGEKAL 9 52 456.26334036980285 910.5121278064057 2 456.263427734375 MULTI HCD FTMS 0 0 0 6987 321742 0.5377786910446235 5 -0.13228607177734375 1 Unmodified _LPSPGEKAL_ ENSG00000131746|ENST00000254051|TNS4 65.47368725323818 0.010552856507075443 1 {I|L}PSPGEKA{I|L} 9 0 + 86.398 0 0 9.4889 9.4889 95.399 0 0 0 48.78530614985209 6.751736484954378 6.751736484954378 13.494850021680094 0 2.110924374808178 1.5228787452803376 0.9247425010840047 0 + + {I|L}PSPGEKA{I|L};[{I|L}P]SNAS{I|L}P{I|L};[{I|L}P]SGGAS{I|L}P{I|L};[PS]{I|L}NAS{I|L}P{I|L};[{I|L}P]SN{[TV]|[{I|L}S]}AP{I|L};[{I|L}P]SN{[TV]|[{I|L}S]}PA{I|L};[PS]{I|L}GGAS{I|L}P{I|L};[{I|L}P]SGG{[TV]|[{I|L}S]}AP{I|L};[PS]{I|L}N{[TV]|[{I|L}S]}AP{I|L};[{I|L}P]SGG{[TV]|[{I|L}S]}PA{I|L} 9.4889;8.0068;6.9955;6.966;6.6087;6.4201;5.9547;5.5974;5.5679;5.4088 +;-;-;-;-;-;-;-;-;- + 206 + NaN NaN 152161.3 NaN 4805 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6989 38.995 NaN 202320 35 0 20096 0.261 + 27747 TATKIEITM 9 47 512.2731414816805 1022.5317300301609 2 512.2730102539062 MULTI HCD FTMS 0 0 0 6987 113810.0546875 0.6092488964027112 10 -0.257598876953125 2 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 76.82478488871298 0.006879825292024087 1 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 62.343 0 0 6.0969 6.0969 93.299 0 0 0 7.147642715192504 7.1753908465964855 7.147642715192504 62.34305011473481 0 2.1747425010840047 0 0.7742275032520141 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 6.0969 + + 93 + NaN NaN 112921.5 NaN 4806 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6990 38.999 NaN 368040 35 0 35551 0.261 + 10254 IIQSREPSL 9 60 521.7981380934764 1041.5817232537527 2 521.7981567382812 MULTI HCD FTMS 0 0 0 6987 131647.390625 1 0 0 3 Unmodified _IIQSREPSL_ BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;ENSG00000137948|ENST00000399546|BRDT;ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000137948|Q58F21-2|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4 57.24910588100465 0.021429789259086996 1 {I|L}{I|L}QSRE[PS]{I|L} 9 0 + 68.623 0 0 6.5884 6.5884 89.02 0 0 0 21.367640270735464 11.038398967110723 11.038398967110723 9.208187539523749 0 2.2302046884880937 1.6989700043360187 0 0 + + {I|L}{I|L}QSRE[PS]{I|L};{I|L}{I|L}[AG]SRE[PS]{I|L};{I|L}{I|L}QS{NN|[MP]|[D{I|L}]|[EV]}Q{I|L}{I|L};{I|L}{I|L}[AG]S{NN|[MP]|[D{I|L}]|[EV]}Q{I|L}{I|L};{I|L}{I|L}QS{NN|[MP]|[D{I|L}]|[EV]}[AG]{I|L}{I|L} 6.5884;5.7043;4.9957;4.1117;4.1117 +;-;-;-;- + 200 NaN NaN 152559.9 NaN 4807 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6991 39.002 NaN 388750 35 0 73991 0.261 + 22523 QSAPQLADAL 10 66 507.26677489029333 1012.5189968473867 2 507.782470703125 MULTI HCD FTMS 0 0 0 6987 34018.46484375 0.7046811830632025 1 -0.029743194580078125 4 Unmodified _QSAPQLADAL_ REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF 16.565877749689598 0.3561603856738253 1 {[QG]|[NA]}T[QP]AD{I|L}A{I|L} 10 -1 + 55.512 0 0 5.4825 5.4825 83.014 0 0 0 23.0664318900601 37.32402579306971 23.0664318900601 1.7609125905568135 0 0.3054621874040891 1.154901959985743 0.3807196863200844 0.4247425010840047 {[QG]|[NA]}T[QP]AD{I|L}A{I|L};{[QG]|[NA]}T[QP]A{I|L}DA{I|L};{[QG]|[NA]}T[QP]AVEA{I|L};{[QG]|[NA]}T[QP]ADA{I|L}{I|L};{[QG]|[NA]}T[QP]{I|L}ADA{I|L};{[QG]|[NA]}T[QP]{I|L}GEA{I|L};{[QG]|[NA]}[QA][TP]D{I|L}A{I|L};{[QG]|[NA]}[QA][TP]{I|L}DA{I|L};{[QG]|[NA]}[QA][TP]VEA{I|L};{[QG]|[NA]}[QA][TP]DA{I|L}{I|L} 5.4825;5.3086;5.1852;5.0574;4.8374;4.714;3.8493;3.6753;3.5519;3.4242 -;-;-;-;-;-;-;-;-;- 262 NaN NaN 153852.1 NaN 4808 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6992 39.005 NaN 149200 35 0 26171 0.261 + 4243 EVFSPPGSDR 10 32 545.761665186123 1089.5087774390458 2 545.7616577148438 MULTI HCD FTMS 0 0 0 6987 70152.4609375 1 0 0 5 Unmodified _EVFSPPGSDR_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 28.494509381512117 0.24525010509582015 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 4 6 35.788 0 0 3.2848 0 0 0 624.2742858221114 624.2742858221114 23.582268588648247 0 0 0 0 1.5 0 1.3252574989159953 0 + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 3.2848 + + 37 NaN NaN 99423.1 NaN 4809 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6993 39.009 NaN 34390 35 0 4685.4 0.261 -1 TPFNTREPVM 10 24 604.2923568564806 1206.5701607797612 2 604.2928466796875 MULTI HCD FTMS 0 0 0 6987 37101.9453125 0.8150326580336567 3 -0.08267974853515625 6 Oxidation (M) _TPFNTREPVM(Oxidation (M))_ ENSG00000242574|ENST00000418107|HLA-DMB 12.872603262515298 0.3907060291096084 1 [TP]{M(Oxidation (M))|F}N 4 -1 20.445 0 0 1.6945 0 0 0 744.3360079400999 744.3360079400999 20.445312593723983 0 0 0 0 0.4247425010840047 0 0 0 [TP]{M(Oxidation (M))|F}N 1.6945 + + 7 + NaN NaN 101478.4 NaN 4810 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6994 39.012 NaN 61120 35 0 7259.7 0.261 + 8903 HPDENILRF 9 24 570.7934870072348 1139.5724210812696 2 570.7938232421875 MULTI HCD FTMS 0 0 0 6987 28809.6328125 0.1988957919645007 16 -0.42964935302734375 7 Unmodified _HPDENILRF_ tr|U7SYE8|U7SYE8_FUSNUFAD-bindingFR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00839PE=4SV=1 3.5964929083625545 0.32375295897743744 1 HPV 3 7 31.198 0 0 2.7377 0 0 0 803.3712905729891 803.3712905729891 17.21848749616356 0 0 0 0 0.5 0 0 0 HPV 2.7377 - 9 + NaN NaN 95085.8 NaN 4811 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6995 39.015 NaN 58622 35 0 18033 0.261 -1 GEVVRCLSEQ 10 22 588.7875244849213 1175.5604960366425 2 588.7879638671875 MULTI HCD FTMS 0 0 0 6987 37230.47265625 1 0 0 8 Carbamidomethyl (C) _GEVVRC(Carbamidomethyl (C))LSEQ_ ENSG00000125968|ENST00000376112|ID1;nc|ENSG00000125968|P41134-2|ID1 2.9952420565917617 0.4594494122822477 1 {[DA]|[EG]}V 3 -1 15.458 0 0 1.3149 0 0 0 887.4054416755674 887.4054416755674 15.45757490560675 0 0 0 0 0.5 0 0 0 {[DA]|[EG]}V 1.3149 + + 4 NaN NaN 98615.6 NaN 4812 2181 6987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6997 39.02 NaN 255130 35 0 49484 0.327 + 20823 PHSLRYNLT 9 43 550.795964060612 1099.577375188024 2 551.2841186523438 MULTI HCD FTMS 0 0 0 6996 7689.16650390625 0.030251263823045348 37 -1.0064620971679688 1 Unmodified _PHSLRYNLT_ ENSG00000204520|ENST00000449934|MICA;MICA|p.G93Pfs*27|1|0.2|ENSG00000204520|chr6:31410748-31410749|-/CCTGACT|frameshift_variant;nc|ENSG00000204520|Q29983-2|MICA;nc|ENSG00000204520|Q29983|MICA 3.944395688203298 0.32111559684428237 1 TTTT{M(Oxidation (M))|F}W[{I|L}T] 8 7 36.943 0 0 3.3598 0 0 130.1188937825271 0 130.1188937825271 0 27.211309630365577 0 0 0 0 0 0.8807196863200843 0 TTTT{M(Oxidation (M))|F}W[{I|L}T] 3.3598 - 186 + NaN NaN 117446.6 NaN 4813 2182 6996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6998 39.025 NaN 58902 35 0 10515 0.261 + 14180 LALATEGGVL 10 28 472.2766712693211 942.5387896054423 2 472.2767333984375 MULTI HCD FTMS 0 0 0 6996 45197.8671875 0.9649812502314323 1 -0.02313995361328125 2 Unmodified _LALATEGGVL_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 6.2057823575117 0.44245551207394906 1 V{I|L} 2 8 19.464 0 0 2.0651 0 0 712.3742542951187 0 712.3742542951187 0 19.463950151760656 0 0 0 0 0 0 0 + V{I|L} 2.0651 + + 4 NaN NaN 90124 NaN 4814 2182 6996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 6999 39.028 NaN 87758 35 0 10566 0.261 + 9310 HPQPGAVEL 9 30 474.250840207838 946.487127482476 2 474.2508239746094 MULTI HCD FTMS 0 0 0 6996 34024.328125 0.08197298135853325 13 -0.34372711181640625 3 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 32.78568957990786 0.09846250359632436 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L} 8 2 + 41.916 0 0 4.4286 4.4286 86.04 0 0 0 4.6040937697618745 41.91630954681237 4.6040937697618745 9.262137858390808 0 1.7302046884880937 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L} 4.4286;3.45 -;- 38 NaN NaN 86373.9 NaN 4815 2182 6996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7000 39.032 NaN 360980 35 0 87968 0.261 + 19181 NIEGPDAKL 9 55 478.7560490870676 955.4975452409352 2 478.7561340332031 MULTI HCD FTMS 0 0 0 6996 120649.1328125 0.029704102984114345 -7 0.1915283203125 4 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 61.08992128646608 0.016056751534446034 1 {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 9 0 + 79.715 0 0 8.3428 8.3428 93.05 0 0 0 29.67294031092848 72.72546876525617 29.67294031092848 10.083559388717376 0 2.3494850021680094 2 0 1.035666875892183 + + {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L} 8.3428;7.2875;6.3238 +;-;- + 133 NaN NaN 138158.9 NaN 4816 2182 6996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7001 39.035 NaN 70204 35 0 21871 0.261 -1 0 34 441.29743767595807 440.2901612093581 1 441.29742431640625 MULTI HCD FTMS 0 0 0 6996 26413.396484375 0.5390033606854012 -11 0.2640838623046875 5 NaN NaN 1 T 1 -1 0.9691 0 0 0.2201 0 0 160.61002922869244 175.6097353570922 336.2197645857847 0 0 0 0 0 0 0 0 0 T 0.2201 - 1 + NaN NaN 94551.9 NaN 4817 2182 6996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7002 39.038 NaN 51103 35 0 6025 0.261 -1 HPVLKEMEVQ 10 22 613.3159539454991 1224.6173549577982 2 613.3163452148438 MULTI HCD FTMS 0 0 0 6996 23230.591796875 0.13762962040345653 36 -0.9799842834472656 6 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.498486711656943 0.462078817294651 1 HPV 3 -1 26.198 0 0 2.1393 0 0 0 888.4163912408811 888.4163912408811 20.713337517843655 0 0 0 0 0 0 0 0 HPV 2.1393 + + 4 + NaN NaN 88946.4 NaN 4818 2182 6996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7004 39.044 NaN 2507000 35 0 275360 0.327 + 18925 NAFKEITTM 9 92 535.7628626719894 1069.5111724107787 2 535.7633056640625 MULTI HCD FTMS 0 0 0 7003 1515392.375 0.8800460147794931 2 -0.052944183349609375 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 168.5375213894962 4.622051367253751E-09 1 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 122.31 0 0 11.436 11.436 96.564 0 0 0 14.856245400389781 14.856245400389781 14.856245400389781 14.856245400389781 0 3.0356668758921828 1.5228787452803376 1.8411290632962718 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QG]|[NA]}E{I|L}TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}K[KG]{M(Oxidation (M))|F};N[HV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K[WQ];{[SA]|[TG]}[{I|L}V]T{M(Oxidation (M))|F}{[QG]|[NA]}T{M(Oxidation (M))|F} 11.436;10.047;5.7353;2.9779;2.8384;1.6618;1.2367;0.67582 +;+;-;-;-;-;-;- + 1167 + NaN NaN 462145 NaN 4819 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7005 39.048 NaN 485160 35 0 46465 0.261 + 34521 YPGQPHPAL 9 59 490.25338698706804 978.4922210409361 2 490.2534484863281 MULTI HCD FTMS 0 0 0 7003 261026.3125 0.8635292040287351 2 -0.052944183349609375 2 Unmodified _YPGQPHPAL_ ENSG00000114315|ENST00000232424|HES1 48.345845343767074 0.03388484103555672 1 [PA]NYAYPA 8 6 55.667 0 0 5.6891 0 0 0 128.07215675930152 128.07215675930152 12.708122007288623 0 0 0 0 1 1.6989700043360187 0 0.3807196863200844 [PA]NYAYPA 5.6891 - 190 NaN NaN 152637.1 NaN 4820 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7006 39.052 NaN 420290 35 0 31587 0.261 + 9455 HPVSREWTL 9 68 562.7957015412279 1123.5768501492557 2 562.795654296875 MULTI HCD FTMS 0 0 0 7003 151751.4375 0.18406162700901402 18 -0.4610710144042969 3 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 19.361941925380144 0.1930734562688509 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VVTQC{I|L} 8 7 40.112 0 0 3.5701 0 0 168.12620742011876 0 168.12620742011876 0 26.924712680444358 0 0 0 0.5 0 0.3252574989159953 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VVTQC{I|L} 3.5701 - 182 NaN NaN 148881.8 NaN 4821 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7007 39.055 NaN 111920 35 0 30847 0.261 + 10431 IPCEEGDKL 9 29 502.24183451287786 1002.4691160925557 2 502.24188232421875 MULTI HCD FTMS 0 0 0 7003 81848.140625 0.2537630784160453 11 -0.29084014892578125 4 Unmodified _IPCEEGDKL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 19.361941925380144 0.1930734562688509 1 {I|L}P 2 7 40.969 0 0 4.0868 0 0 0 789.3078871723874 789.3078871723874 28.979400086720375 0 0 0 0 0 2 0 0 + {I|L}P 4.0868 + + 12 + NaN NaN 117261.2 NaN 4822 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7008 39.058 NaN 90832 35 0 11448 0.261 -1 MPTTERVTL 9 35 532.2762202172897 1062.5378875013794 2 532.2763671875 MULTI HCD FTMS 0 0 0 7003 40810.4453125 0.6003766794785654 3 -0.07940292358398438 5 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 22.65808497894818 0.16459551161911185 1 ETT[EP] 5 -1 25.713 0 0 2.42 0 0 487.31285292793126 0 487.31285292793126 0 1.249387366082999 0 0 0 0.5 0 0.5 0 ETT[EP] 2.42 - 29 NaN NaN 94631.6 NaN 4823 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7009 39.062 NaN 49665 35 0 9012.7 0.261 -1 YALDCEMCY 9 29 592.2087442716671 1182.4029356101341 2 592.2085571289062 MULTI HCD FTMS 0 0 0 7003 26860.876953125 0.7324906078991222 1 -0.029796600341796875 6 Carbamidomethyl (C),Oxidation (M) _YALDC(Carbamidomethyl (C))EM(Oxidation (M))CY_ nc|ENSG00000205176|Q8IX06|REXO1L1P 2.0597508629832335 0.3354026079994024 1 T{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.0954 0 0 916.308883451346 0 916.308883451346 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 T{M(Oxidation (M))|F} 2.0954 - 8 NaN NaN 89134 NaN 4824 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7010 39.065 NaN 91376 35 0 12058 0.261 -1 FVMMILNM 8 37 523.7411137315038 1045.4676745298075 2 524.7433471679688 MULTI HCD FTMS 0 0 0 7003 14591.79296875 0.6241090613124872 2 -0.052944183349609375 7 3 Oxidation (M) _FVM(Oxidation (M))M(Oxidation (M))ILNM(Oxidation (M))_ ENST00000374212.4_1_9:116024667-116024982:+|nuORF 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2529 0 0 880.4215299758997 0 880.4215299758997 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2529 + + 28 + NaN NaN 89424 NaN 4825 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7011 39.068 NaN 77431 35 0 12300 0.263 + 3974 EQYTWRSPF 9 41 405.1925931349897 1212.555950005169 3 405.19268798828125 MULTI HCD FTMS 0 0 0 7003 12335.9326171875 0.5848549816496584 1 -0.029796600341796875 8 Unmodified _EQYTWRSPF_ REV__ENSG00000197535|ENST00000399233|MYO5A;REV__MYO5A|p.G696D|1|0.12|ENSG00000197535|chr15:52379834-52379834|C/T|missense_variant;REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A;REV__nc|ENSG00000197535|Q9Y4I1|MYO5A 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.8135 0 0 1047.4769227608315 0 1047.4769227608315 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8135 + + 3 + NaN NaN 95161.4 NaN 4826 2183 7003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7013 39.073 NaN 249850 35 0 25132 0.327 + 14714 LHGSSDLEL 9 58 485.7455974004598 969.4766418677196 2 485.7458190917969 MULTI HCD FTMS 0 0 0 7012 76278.375 1 0 0 1 Unmodified _LHGSSDLEL_ REV__ENSG00000147697|ENST00000276708|GSDMC 10.823927491677226 0.26684000660059787 1 VE{I|L} 3 -1 28.94 0 0 2.9851 0 0 610.27153212715 0 610.27153212715 0 10.713337517843655 0 0 0 0.4247425010840047 0 0 0 VE{I|L} 2.9851 - 122 NaN NaN 120755.3 NaN 4827 2184 7012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7014 39.078 NaN 92926 35 0 14685 0.261 + 28846 TVIEREDGL 9 32 516.2721431360471 1030.5297333388942 2 516.272216796875 MULTI HCD FTMS 0 0 0 7012 48237.9609375 0.5121899019819048 5 -0.12221527099609375 2 Unmodified _TVIEREDGL_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 20.41453444215458 0.18397929046831515 1 {[TV]|[{I|L}S]}{I|L} 3 6 34.309 0 0 3.3293 0 0 0 714.3074182356316 714.3074182356316 13.339993556128107 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + {[TV]|[{I|L}S]}{I|L} 3.3293 + + 9 NaN NaN 90576.2 NaN 4828 2184 7012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7015 39.081 NaN 88825 35 0 11978 0.261 -1 LEVTCINPT 9 37 523.7631826065156 1045.511812279831 2 524.2824096679688 MULTI HCD FTMS 0 0 0 7012 2631.7705078125 0.08465288313842269 -5 0.13526153564453125 3 Carbamidomethyl (C) _LEVTC(Carbamidomethyl (C))INPT_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 4.3292370932331545 0.3181982124262546 1 T 1 -1 6.9897 0 0 0.66854 0 0 130.05611780507428 811.3842867486936 941.4404045537678 0 0 0 0 0 0 0 0 0 T 0.66854 + + 17 + NaN NaN 89427 NaN 4829 2184 7012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7016 39.085 NaN 86566 35 0 18987 0.261 -1 GMLVSMPLL 9 36 496.76143455133644 991.5083161694729 2 496.7614440917969 MULTI HCD FTMS 0 0 0 7012 26810.330078125 0.10103843204162084 19 -0.4803581237792969 4 2 Oxidation (M) _GM(Oxidation (M))LVSM(Oxidation (M))PLL_ FLT4|p.T195M|1|0.51|ENSG00000037280|chr5:180630035-180630035|G/A|missense_variant 4.3292370932331545 0.3181982124262546 1 {I|L}{I|L} 2 -1 20.969 0 0 2.1149 0 0 747.3306284852877 0 747.3306284852877 0 5.484550065040281 0 0 0 0 0 0 0 {I|L}{I|L} 2.1149 + + 9 NaN NaN 112920.7 NaN 4830 2184 7012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7017 39.088 NaN 34394 35 0 4283.6 0.261 -1 QPDEEPMDM 9 26 554.2017676845397 1106.3889824358794 2 554.2024536132812 MULTI HCD FTMS 0 0 0 7012 10708.15234375 0.55301091593006 10 -0.2610435485839844 5 Oxidation (M) _QPDEEPM(Oxidation (M))DM_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 8.155526934196011 0.2891920862272901 1 DM 2 -1 24.464 0 0 2.2112 0 0 842.3121815412125 0 842.3121815412125 0 24.463950151760656 0 0 0 0.5 0 0 0 DM 2.2112 + + 3 NaN NaN 89263.9 NaN 4831 2184 7012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7018 39.091 NaN 54063 35 0 5875.7 0.261 + 35131 YVFDNWLQ 8 36 542.7578112809886 1083.501069628777 2 542.7584838867188 MULTI HCD FTMS 0 0 0 7012 13433.1875 0.5224567482669833 2 -0.0496063232421875 6 Unmodified _YVFDNWLQ_ ENSG00000008513|ENST00000522652|ST3GAL1 2.0597508629832335 0.5389364538378849 1 G 1 8 3.9794 0 0 0.36727 0 0 559.2689662125646 464.17685877017817 1023.4458249827428 0 0 0 0 0 0 0 0 0 G 0.36727 - 1 + NaN NaN 95454.8 NaN 4832 2184 7012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7020 39.097 NaN 281770 35 0 31559 0.327 + 84 ADKMDMSL 8 57 492.7042814229636 983.3940099127273 2 492.7041320800781 MULTI HCD FTMS 0 0 0 7019 166671.0625 0.7553768727216693 -21 0.542327880859375 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 76.82478488871298 0.02181697117040772 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 52.894 0 0 5.3787 0 0 228.07396132636876 0 228.07396132636876 0 22.8912740800169 0 0 0 1.6747425010840047 0 0.3494850021680094 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.3787 + + 91 NaN NaN 130425 NaN 4833 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7021 39.101 NaN 120480 35 0 33523 0.261 -1 0 37 441.7879131732742 881.5612734133484 2 441.7879333496094 MULTI HCD FTMS 0 0 0 7019 78695.875 0.9544822394894708 -2 0.052944183349609375 2 NaN NaN 1 N 1 -1 5.4846 0 0 0.62214 0 0 183.16250288609382 581.3449539974071 764.5074568835009 0 0 0 0 0 0 0 0 0 N 0.62214 - 8 + NaN NaN 102688.3 NaN 4834 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7022 39.105 NaN 161540 35 0 22255 0.261 -1 VYTRHMTWI 9 51 408.20603883039854 1221.5962870913957 3 408.2063293457031 MULTI HCD FTMS 0 0 0 7019 58268.09765625 0.5133148906619609 14 -0.379150390625 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 18.373094154950223 0.20161688160436167 1 VY 2 -1 39.949 0 0 3.2702 0 0 0 956.4405841755804 956.4405841755804 16.989700043360187 0 0 0 0 0.5 1.6989700043360187 0 0 VY 3.2702 + + 14 + NaN NaN 100950.6 NaN 4835 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7023 39.108 NaN 137730 35 0 20889 0.261 + 19173 NIDTCSFNGPK 11 32 598.2724543926658 NaN 0 598.2907104492188 PEAK HCD FTMS 0 0 0 7019 7263.69873046875 0.30466632975179003 8 -0.2081146240234375 4 Unmodified _NIDTCSFNGPK_ REV__ENSG00000174837|ENST00000312053|ADGRE1;REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF;REV__nc|ENSG00000174837|Q14246-2|ADGRE1;REV__nc|ENSG00000174837|Q14246-4|ADGRE1 5.296884461304476 0.3270944076746277 1 EH{M(Oxidation (M))|F} 3 -1 16.198 0 0 1.356 0 0 131.05952082847608 647.2793752723605 778.3388961008366 0 0 0 0 0 0 0 0 0 EH{M(Oxidation (M))|F} 1.356 - 14 + NaN NaN 105735 NaN 4836 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7024 39.111 NaN 60651 35 0 6337.3 0.261 -1 QADFLDKQM 9 37 556.2583217080297 1110.5020904828593 2 556.2589111328125 MULTI HCD FTMS 0 0 0 7019 22610.765625 0.22210386961109888 -10 0.2676124572753906 5 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 14.405379775768559 0.2358970535022398 1 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3385 0 0 844.4120652939147 0 844.4120652939147 0 2.94863128127119 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.3385 - 22 NaN NaN 102085 NaN 4837 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7025 39.115 NaN 63075 35 0 10497 0.261 + 18631 MYDDIAHS 8 24 476.1984905395241 NaN 0 476.19866943359375 PEAK HCD FTMS 0 0 0 7019 13564.328125 0.44799971926382354 109 -3.0029869079589844 6 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 3.4949 0 0 0.36773 0 0 426.22063722963566 406.11164270572505 832.3322799353607 0 0 0 0 0 0 0 0 0 + D 0.36773 + + 3 + NaN NaN 95650.1 NaN 4838 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7026 39.118 NaN 13327 35 0 3924.2 0.261 -1 PMALASVSWML 11 11 619.3018800834647 1236.5892072337292 2 619.3011474609375 MULTI HCD FTMS 0 0 0 7019 2723.82470703125 0.03587930363087894 17 -0.4376411437988281 7 2 Oxidation (M) _PM(Oxidation (M))ALASVSWM(Oxidation (M))L_ REG3G|p.P8A|1|0.18|ENSG00000143954|chr2:79026115-79026115|C/G|missense_variant 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82096.1 NaN 4839 2185 7019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7028 39.123 NaN 390970 35 0 34816 0.327 + 31596 VYIKHPVSL 9 69 528.3159664070681 1054.6173798809361 2 528.3161010742188 MULTI HCD FTMS 0 0 0 7027 171272.640625 0.11796077134768981 11 -0.29736328125 1 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 89.40071534611396 0.0045416704840156395 1 VY{I|L}KHPVS{I|L} 9 0 + 84.381 0 0 8.0011 8.0011 89.147 0 0 0 5.669219699664353 5.669219699664353 5.669219699664353 5.669219699664353 0 2.673877368056628 1.6989700043360187 0.9559771852360797 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};[KP][HV]{I|L}YVS{I|L};[KP][HV]{I|L}S[YV]{I|L} 8.0011;7.4635;2.313;0.24911 +;+;-;- + 334 + NaN NaN 143464.7 NaN 4840 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7029 39.127 NaN 146700 35 0 18834 0.261 + 23111 REVPEADAL 9 36 500.25879571142065 998.5030384896413 2 500.2589111328125 MULTI HCD FTMS 0 0 0 7027 74286.4375 0.7614620748616783 -1 0.026458740234375 2 Unmodified _REVPEADAL_ sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1 16.149105407346934 0.22083165093524068 1 {I|L}DA{I|L} 4 6 43.488 0 0 4.3553 0 0 568.2636585919937 0 568.2636585919937 0 36.49797211252192 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {I|L}DA{I|L} 4.3553 - 110 NaN NaN 102075.9 NaN 4841 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7030 39.131 NaN 118050 35 0 12434 0.261 + 201 AETVRYSMCT 10 43 580.756873986535 1159.4991950398698 2 580.7576904296875 MULTI HCD FTMS 0 0 0 7027 54034.90625 0.03296128300651831 26 -0.7017745971679688 3 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 12.240655878213236 0.39661705172222156 1 [YR]{I|L}EGTS 7 8 48.052 0 0 4.1442 0 0 0 350.0819657500338 350.0819657500338 29.864488532220008 0 0 0 0 1.7302046884880937 0 0.805462187404089 0 [YR]{I|L}EGTS 4.1442 - 44 NaN NaN 115203.5 NaN 4842 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7031 39.134 NaN 66169 35 0 6859.4 0.261 + 20826 PHSPPQAEALT 11 26 574.2907481779872 1146.5669434227743 2 574.2909545898438 MULTI HCD FTMS 0 0 0 7027 23265.130859375 0.005266114606980069 132 -3.6563491821289062 4 Unmodified _PHSPPQAEALT_ REV__ENSG00000104880|ENST00000668164|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 14.405379775768559 0.3315678654765638 1 V{I|L}T 3 -1 31.198 0 0 2.721 0 0 815.3569647637694 0 815.3569647637694 0 10.6246936830415 0 0 0 0.5 0 0 0 V{I|L}T 2.721 - 21 NaN NaN 105744 NaN 4843 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7032 39.138 NaN 106160 35 0 25699 0.263 + -1 CHCHGSIC 8 28 458.6642826675413 915.3140124018826 2 458.6645202636719 MULTI HCD FTMS 0 0 0 7027 31682.6953125 0.33311513830481765 -5 0.13228607177734375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))HCHGSIC_ REV__ENSG00000009694|ENST00000371130|TENM1;REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1 0.7936320650641473 0.540814922690045 1 V 1 -1 2.4743 0 0 0.27032 0 0 677.2259672132092 135.99160181217033 813.2175690253795 0 0 0 0 0 0 0 0 0 V 0.27032 - 2 + NaN NaN 90132.1 NaN 4844 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7033 39.141 NaN 20927 35 0 5387.9 0.261 + -1 IMDSPAIIIDC 11 20 624.3046148327517 1246.5946767323032 2 624.3041381835938 MULTI HCD FTMS 0 0 0 7027 13572.595703125 0.6581423411056768 -2 0.0496063232421875 6 Carbamidomethyl (C) _IMDSPAIIIDC(Carbamidomethyl (C))_ REV__ENST00000595001.5_1_19:53232066-53233221:-|nuORF 1.1933415558491238 0.4136870758253112 1 G 1 -1 5.4846 0 0 0.43996 0 0 696.8322998785908 489.71116052799067 1186.5434604065815 0 0 0 0 0 0 0 0 0 G 0.43996 - 2 + NaN NaN 83796.1 NaN 4845 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7034 39.144 NaN 21493 35 0 4190.3 0.261 + 20689 PFNSLYEPYC 10 18 616.768447682864 1231.522342432528 2 616.7678833007812 MULTI HCD FTMS 0 0 0 7027 8861.3125 0.2932191924288435 -15 0.3666267395019531 7 Unmodified _PFNSLYEPYC_ REV__ENSG00000198301|ENST00000356260|SDAD1;REV__ENST00000395710.5_1_4:76871905-76902632:-|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88104.4 NaN 4846 2186 7027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7036 39.149 NaN 134520 35 0 14535 0.327 + 27748 TATKIEITM 9 46 512.2731414816805 1022.5317300301609 2 512.273193359375 MULTI HCD FTMS 0 0 0 7035 75209.8984375 0.4026142307674292 16 -0.4042549133300781 1 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 60.07390631473393 0.0174780869009295 1 [TA][KT]{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 48.931 0 0 4.7852 4.7852 90.661 0 0 0 33.64516253185087 8.256434167410731 8.256434167410731 48.93053421393809 0 1.805462187404089 0 0.7742275032520141 0 + + [TA][KT]{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 4.7852 + + 37 + NaN NaN 99336.1 NaN 4847 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7037 39.154 NaN 109350 35 0 11387 0.261 + 16070 LPSPGEKAL 9 42 456.26334036980285 910.5121278064057 2 456.2635498046875 MULTI HCD FTMS 0 0 0 7035 69066.5078125 0.11544186387363015 11 -0.3004341125488281 2 Unmodified _LPSPGEKAL_ ENSG00000131746|ENST00000254051|TNS4 28.494509381512117 0.11816142465008336 1 {I|L}PSPG 5 4 60.278 0 0 6.6203 0 0 0 456.2473543756469 456.2473543756469 25.329693599488294 0 0 0 0 1 1.5228787452803376 0.4247425010840047 0 + {I|L}PSPG 6.6203 + + 65 + NaN NaN 103927.1 NaN 4848 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7038 39.157 NaN 105060 35 0 28948 0.261 + 25680 SIEGPDAKL 9 38 465.2506662101697 928.4867794871394 2 465.2503356933594 MULTI HCD FTMS 0 0 0 7035 54146.25 1 0 0 3 Unmodified _SIEGPDAKL_ ENSG00000124942|ENST00000378024|AHNAK 36.506200033944 0.08138327636155518 1 {[TV]|[{I|L}S]}EG[NP]{I|L}S{I|L} 9 3 + 58.082 0 0 6.2556 6.2556 93.437 0 0 0 25.145228064085998 50.63486257521106 25.145228064085998 58.082137524177995 0 1 2 0 0 {[TV]|[{I|L}S]}EG[NP]{I|L}S{I|L} 6.2556 - 32 NaN NaN 109403.1 NaN 4849 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7039 39.161 NaN 111020 35 0 19452 0.261 + 510 ANTLIQQLN 9 45 507.78252309490966 1013.5504932566193 2 507.78253173828125 MULTI HCD FTMS 0 0 0 7035 37169.12890625 0.2988565036055134 5 -0.121978759765625 4 Unmodified _ANTLIQQLN_ REV__ENSG00000105618|ENST00000321030|PRPF31;REV__ENST00000466404.5_1_19:54621832-54631576:+|nuORF;REV__ENST00000498612.1_1_19:54622012-54631467:+|nuORF;REV__nc|ENSG00000105618|Q8WWY3-2|PRPF31;REV__nc|ENSG00000105618|Q8WWY3-3|PRPF31;REV__nc|ENSG00000105618|Q8WWY3-4|PRPF31 5.731851221503515 0.3075653528928475 1 {[QG]|[NA]}T 3 -1 18.952 0 0 1.8699 0 0 0 724.3994689320444 724.3994689320444 11.962724883926658 0 0 0 0 0.8494850021680094 0 0 0 {[QG]|[NA]}T 1.8699 + + 11 + NaN NaN 92208.5 NaN 4850 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7040 39.164 NaN 77980 35 0 14150 0.261 + 35152 YVHDISGQAT 10 32 545.761665186123 1089.5087774390458 2 545.7619018554688 MULTI HCD FTMS 0 0 0 7035 25870.375 0.3687735918922124 6 -0.15515899658203125 5 Unmodified _YVHDISGQAT_ REV__ENSG00000260691|ENST00000562196|ANKRD20A1;REV__nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P 9.38312468134398 0.42334543440173333 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[RN]S{M(Oxidation (M))|F} 7 -1 23.244 0 0 2.1334 0 0 0 207.07761560611564 207.07761560611564 17.759169494624132 0 0 0 0 0 0 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[RN]S{M(Oxidation (M))|F} 2.1334 - 14 + NaN NaN 101475.2 NaN 4851 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7041 39.167 NaN 59369 35 0 8894.9 0.261 + 32443 WCVWPRFF 8 29 570.7751496826688 NaN 0 570.793212890625 PEAK HCD FTMS 0 0 0 7035 12880.51171875 0.6991878176248432 -2 0.05295562744140625 6 Unmodified _WCVWPRFF_ ENST00000526607.1_2_9:102669309-102677517:+|nuORF 5.760428011301431 0.38822285293237185 1 PV 2 7 9.464 0 0 0.83051 0 0 137.02214410915548 803.3654268854124 940.3875709945678 0 0 0 0 0 0 0 0 0 PV 0.83051 - 4 + NaN NaN 91045.1 NaN 4852 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7042 39.171 NaN 71276 35 0 7955.5 0.261 + 17403 LYQRAFQHL 9 28 588.3195649499503 1174.6245769667005 2 588.3197631835938 MULTI HCD FTMS 0 0 0 7035 24261.052734375 0.6824612639582324 -1 0.02649688720703125 7 Unmodified _LYQRAFQHL_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 10.823927491677226 0.26684000660059787 1 QH{I|L} 3 6 28.188 0 0 2.3997 0 0 778.4150257794937 0 778.4150257794937 0 11.989700043360187 0 0 0 0.5 0 0 0 + QH{I|L} 2.3997 + + 6 NaN NaN 87749.5 NaN 4853 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7043 39.174 NaN 52945 35 0 7862 0.262 -1 TIHSQETM 8 38 481.71536117251514 961.4161694118303 2 481.71563720703125 MULTI HCD FTMS 0 0 0 7035 12293.1005859375 0.156391941433809 -7 0.184906005859375 8 Oxidation (M) _TIHSQETM(Oxidation (M))_ USP33|p.K100Mfs*7|1|0.07|ENSG00000077254|chr1:77739410-77739411|-/GTAAAACA|frameshift_variant 3.944395688203298 0.5361403129012058 1 T{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.388 0 0 695.3232408574788 0 695.3232408574788 0 22.95880017344075 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.388 + + 5 NaN NaN 87312.2 NaN 4854 2187 7035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7045 39.179 NaN 4221500 35 0 1035000 0.327 + 19182 NIEGPDAKL 9 91 478.7560490870676 955.4975452409352 2 478.7562561035156 MULTI HCD FTMS 0 0 0 7044 3728098 0.9178665801019118 -1 0.02968597412109375 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 184.3555567057281 7.78523872066095E-13 1 {[QV]|[N{I|L}]|[RA]|[KV]}EGPDAK{I|L} 9 0 + 112.67 0 0 11.791 11.791 96.596 0 0 0 15.69599075987611 15.69599075987611 15.69599075987611 14.987737688117235 0 2.504432191740108 2 1.642642683904553 2.135151878060192 + + {[QV]|[N{I|L}]|[RA]|[KV]}EGPDAK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EGPS{I|L}N{I|L};N{I|L}EGPDAK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QGPDAK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EGPS{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]GPDAK{I|L};{[QN]|[E{I|L}]|[KN]}NGPDAK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QGPS{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}E[KP]EN{I|L};{[QN]|[E{I|L}]|[KN]}GGGPDAK{I|L} 11.791;10.223;10.149;9.6392;9.259;8.6755;8.1254;8.0706;7.469;7.1617 +;-;+;-;-;-;-;-;-;- + 1288 NaN NaN 725556.6 NaN 4855 2188 7044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7046 39.184 NaN 237440 35 0 33958 0.261 + 20999 PLNEQQEL 8 45 485.7455974004598 969.4766418677196 2 486.2344970703125 MULTI HCD FTMS 0 0 0 7044 14763.6552734375 0.4795892328511444 5 -0.1254730224609375 2 Unmodified _PLNEQQEL_ REV__ENST00000394456.9_1_19:6389571-6391922:-|nuORF 20.453626601364224 0.4433031943603284 1 A{M(Oxidation (M))|F} 2 -1 26.326 0 0 2.7155 0 0 733.3939525140072 0 733.3939525140072 0 0.39590623023812554 0 0 0 0.7742275032520141 0 0 0 A{M(Oxidation (M))|F} 2.7155 - 34 + NaN NaN 114362.8 NaN 4856 2188 7044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7047 39.187 NaN 96494 35 0 10099 0.261 + 16119 LPTENVDKM 9 42 523.7631826065156 1045.511812279831 2 523.7626953125 MULTI HCD FTMS 0 0 0 7044 50262.2890625 0.8744967639841096 -3 0.0826416015625 3 Unmodified _LPTENVDKM_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 20.580933911654288 0.18254163597178805 1 {I|L}PTE 4 5 28.532 0 0 2.729 0 0 0 602.2620333307249 602.2620333307249 -0.40816854212089027 0 -0.40816854212089027 0 0 0.5 0 0 0 + {I|L}PTE 2.729 + + 30 + NaN NaN 94054.5 NaN 4857 2188 7044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7048 39.19 NaN 48230 35 0 4886.6 0.261 -1 HPVLKEMEVQ 10 27 613.3159539454991 1224.6173549577982 2 613.3157958984375 MULTI HCD FTMS 0 0 0 7044 15334.033203125 0.090846466050167 42 -1.1491584777832031 4 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4178560846311 888.4178560846311 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 5 + NaN NaN 93277 NaN 4858 2188 7044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7050 39.196 NaN 831180 35 0 99775 0.327 + 18926 NAFKEITTM 9 70 535.7628626719894 1069.5111724107787 2 535.7631225585938 MULTI HCD FTMS 0 0 0 7049 291049.53125 0.16902353760358735 8 -0.22475433349609375 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 143.90916361153978 1.5265063399744E-05 1 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 120.96 0 0 11.31 11.31 97.525 0 0 0 107.77101595049125 16.478174818886373 16.478174818886373 21.692066049390206 0 2.9361818737241734 1.5228787452803376 1.5044321917401078 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QG]|[NA]}E{I|L}TT{M(Oxidation (M))|F};N[HV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K[WQ] 11.31;9.2815;5.0306;1.2853 +;+;-;- + 314 + NaN NaN 203736.2 NaN 4859 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7051 39.2 NaN 168320 35 0 19262 0.261 + 1540 AYVHMVTHF 9 53 560.7657570063983 1119.5169610795965 2 560.7657470703125 MULTI HCD FTMS 0 0 0 7049 82821.3828125 0.08436836108128647 79 -2.1996231079101562 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 77.98433622928108 0.006504613272346738 1 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VT{[{M(Oxidation (M))|F}H]|[RQ]} 9 2 + 74.447 0 0 6.6499 6.6499 91.42 0 0 0 66.03076880544918 7.147642715192504 7.147642715192504 15.071297076834611 0 2.4604093769761874 0 0 0 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VT{[{M(Oxidation (M))|F}H]|[RQ]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}V[QA]W;{M(Oxidation (M))|F}WH[TA][SG]V{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]{[{M(Oxidation (M))|F}H]|[RQ]};{M(Oxidation (M))|F}G[QA]V{M(Oxidation (M))|F}[PA]{[{M(Oxidation (M))|F}H]|[RQ]};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}V[QA]W;{M(Oxidation (M))|F}SY{[QG]|[NA]}[R{M(Oxidation (M))|F}]{[ES]|[DT]|[{I|L}C]} 6.6499;5.3037;3.0497;2.9168;2.8759;1.4869;0.94513 -;-;-;-;-;-;- 449 + NaN NaN 105964 NaN 4860 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7052 39.203 NaN 259780 35 0 21304 0.261 + 9456 HPVSREWTL 9 49 562.7957015412279 1123.5768501492557 2 562.7952880859375 MULTI HCD FTMS 0 0 0 7049 92608.0703125 0.11232573724966473 24 -0.6556816101074219 3 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 1 HPV{I|L} 4 5 35.433 0 0 3.1536 0 0 0 674.2927340143186 674.2927340143186 14.463950151760656 0 0 0 0 0.5 0 0 0 HPV{I|L} 3.1536 - 86 + NaN NaN 123471.5 NaN 4861 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7053 39.207 NaN 211290 35 0 13979 0.261 + 34522 YPGQPHPAL 9 56 490.25338698706804 978.4922210409361 2 490.2534484863281 MULTI HCD FTMS 0 0 0 7049 87683.3046875 0.2900745659631763 8 -0.22475433349609375 4 Unmodified _YPGQPHPAL_ ENSG00000114315|ENST00000232424|HES1 42.09456458481378 0.05572955244001856 1 YP 2 7 37.251 0 0 3.8069 0 0 0 715.3542024935026 715.3542024935026 13.834172022634377 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 + YP 3.8069 + + 64 + NaN NaN 112099.2 NaN 4862 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7054 39.21 NaN 144540 35 0 23877 0.261 + -1 YRVMTRLF 8 36 551.297370872547 NaN 0 551.2843627929688 PEAK HCD FTMS 0 0 0 7049 6420.6845703125 0.7155056045271521 3 -0.07586669921875 5 Oxidation (M) _YRVM(Oxidation (M))TRLF_ REV__ENSG00000092421|ENST00000343348|SEMA6A;REV__ENST00000514316.1_1_5:115814236-115815903:-|nuORF;REV__nc|ENSG00000092421|Q9H2E6-2|SEMA6A 4.3292370932331545 0.38822285293237185 1 TTTT{M(Oxidation (M))|F}W 6 -1 27.115 0 0 2.4637 0 0 131.122621528494 229.11934839420158 360.2419699226956 0 0 0 0 0 0 0 0.5 0 TTTT{M(Oxidation (M))|F}W 2.4637 - 65 + NaN NaN 114596.9 NaN 4863 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7055 39.213 NaN 247180 35 0 38123 0.261 + 19288 NLTADEESM 9 57 505.2119702843632 1008.4093876355264 2 505.21148681640625 MULTI HCD FTMS 0 0 0 7049 45742.87890625 0.7000644994169107 -1 0.01642608642578125 6 Unmodified _NLTADEESM_ REV__ENSG00000136872|ENST00000647789|ALDOB 10.823927491677226 0.26684000660059787 1 {[QV]|[N{I|L}]|[RA]|[KV]}[TA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[CP]|[EA]} 9 -1 + 20.581 0 0 2.0409 2.0409 86.678 0 0 0 8.741232429092795 1.7392700738498448 1.7392700738498448 20.580912256343996 0 0.4247425010840047 1.2218487496163564 0.2742275032520141 0 {[QV]|[N{I|L}]|[RA]|[KV]}[TA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[CP]|[EA]} 2.0409 - 37 NaN NaN 107434 NaN 4864 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7056 39.217 NaN 139530 35 0 17684 0.261 -1 QPMQPTPSM 9 42 516.7281050562667 NaN 0 516.727783203125 PEAK HCD FTMS 0 0 0 7049 49631.76171875 0.7382099175076817 -4 0.09906768798828125 7 Oxidation (M) _QPM(Oxidation (M))QPTPSM_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 17.11289562659939 0.20677709319598864 1 P 1 -1 9.6041 0 0 0.93113 0 0 698.3059952473508 233.05951868228752 931.3655139296383 0 0 0 0 0 0.5 0 0 0 P 0.93113 + + 7 + NaN NaN 124775.3 NaN 4865 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7057 39.22 NaN 64514 35 0 8084 0.261 -1 MPTTERVTL 9 37 532.2762202172897 1062.5378875013794 2 532.2764892578125 MULTI HCD FTMS 0 0 0 7049 25394.9921875 0.37359457776476235 9 -0.2543220520019531 8 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 9.38312468134398 0.279288223203164 1 T[EP] 3 -1 17.447 0 0 1.642 0 0 717.402635642775 0 717.402635642775 0 2.8431811792050645 0 0 0 0.5 0 0.5 0 T[EP] 1.642 - 13 NaN NaN 93855 NaN 4866 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7058 39.223 NaN 71608 35 0 7572.6 0.261 + 24973 RYTTEFHEL 9 34 598.2907469857071 1194.566941038214 2 598.7932739257812 MULTI HCD FTMS 0 0 0 7049 14395.615234375 0.24190763381998728 7 -0.201690673828125 9 Unmodified _RYTTEFHEL_ ENSG00000166483|ENST00000450114|WEE1;ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;SWAP70-WEE1|1|fusion;WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F}{[YC]|[HE]}{I|L} 4 5 25.445 0 0 2.1301 0 0 650.303514549025 0 650.303514549025 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{[YC]|[HE]}{I|L} 2.1301 + + 7 NaN NaN 102035.1 NaN 4867 2189 7049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7060 39.229 NaN 36522 35 0 4781.5 0.327 + 35277 YVVEKEEQL 9 28 568.7952756270512 1135.5759983209023 2 568.79541015625 MULTI HCD FTMS 0 0 0 7059 11802.26953125 0.5415777445172392 1 -0.019756317138671875 1 Unmodified _YVVEKEEQL_ ENSG00000198919|ENST00000361582|DZIP3 6.723162845929126 0.3000504726104499 1 [YV]V 3 6 30.062 0 0 2.6473 0 0 0 771.3496798150999 771.3496798150999 30.061668675368622 0 0 0 0 0.5 1.6989700043360187 0 0 + [YV]V 2.6473 + + 3 + NaN NaN 107919.7 NaN 4868 2190 7059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7061 39.233 NaN 51931 35 0 7896.2 0.262 + 9311 HPQPGAVEL 9 24 474.250840207838 946.487127482476 2 474.25079345703125 MULTI HCD FTMS 0 0 0 7059 19453.224609375 0.04686760639061575 21 -0.5631294250488281 2 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 19.256988751693697 0.19398022840297344 1 VE{I|L} 3 6 28.94 0 0 3.0576 0 0 587.2816639630875 0 587.2816639630875 0 28.940162615404077 0 0 0 0.4247425010840047 0 0 0 + VE{I|L} 3.0576 + + 8 NaN NaN 101575 NaN 4869 2190 7059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7062 39.237 NaN 103000 35 0 15462 0.261 + 3444 EFRDNEAL 8 38 497.2356497084418 992.4567464836837 2 497.2353515625 MULTI HCD FTMS 0 0 0 7059 38192.671875 0.7990126795849587 -2 0.049373626708984375 3 Unmodified _EFRDNEAL_ REV__ENSG00000163913|ENST00000348417|IFT122;REV__ENST00000506507.5_1_3:129168750-129233481:+|nuORF;REV__nc|ENSG00000163913|Q9HBG6-10|IFT122;REV__nc|ENSG00000163913|Q9HBG6-11|IFT122;REV__nc|ENSG00000163913|Q9HBG6-3|IFT122;REV__nc|ENSG00000163913|Q9HBG6-4|IFT122;REV__nc|ENSG00000163913|Q9HBG6-5|IFT122;REV__nc|ENSG00000163913|Q9HBG6-6|IFT122;REV__nc|ENSG00000163913|Q9HBG6-7|IFT122;REV__nc|ENSG00000163913|Q9HBG6-8|IFT122;REV__nc|ENSG00000163913|Q9HBG6-9|IFT122 7.910154910731844 0.5302565402355366 1 A{I|L} 2 -1 22.959 0 0 2.3133 0 0 790.3250786142598 0 790.3250786142598 0 1.9897000433601875 0 0 0 0.5 0 0 0 A{I|L} 2.3133 + + 7 NaN NaN 103614.2 NaN 4870 2190 7059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7063 39.24 NaN 117260 35 0 25413 0.261 + -1 VHCLPCVL 8 28 470.7404760111552 939.4663990891104 2 471.2427062988281 MULTI HCD FTMS 0 0 0 7059 21802.98828125 0.08551266678874084 -7 0.18495941162109375 4 Carbamidomethyl (C) _VHCLPC(Carbamidomethyl (C))VL_ REV__ENSG00000158286|ENST00000377939|RNF207;REV__nc|ENSG00000158286|Q6ZRF8-2|RNF207 6.354104778181461 0.5325651638111438 1 V{I|L} 2 -1 20.969 0 0 2.232 0 0 709.302130228347 0 709.302130228347 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.232 + + 1 NaN NaN 106641.2 NaN 4871 2190 7059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7064 39.243 NaN 44415 35 0 4695 0.261 + -1 PHGAETMRVT 10 27 570.7751496826688 NaN 0 570.7943725585938 PEAK HCD FTMS 0 0 0 7059 8548.3134765625 0.4640247821327087 1 -0.019756317138671875 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PHGAETMRVT_ REV__ENST00000482340.5_1_9:140693340-140695356:+|nuORF 2.9952420565917617 0.3376207769591857 1 PV 2 -1 10.969 0 0 0.96259 0 0 137.0209928503445 803.3697609363371 940.3907537866817 0 0 0 0 0 0 0 0 0 PV 0.96259 - 5 + NaN NaN 94797.6 NaN 4872 2190 7059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7066 39.248 NaN 309600 35 0 30271 0.327 + 85 ADKMDMSL 8 61 492.7042814229636 983.3940099127273 2 492.7041931152344 MULTI HCD FTMS 0 0 0 7065 174168.21875 0.7893550472019017 -15 0.38626861572265625 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 76.82478488871298 0.02181697117040772 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 52.286 0 0 5.3169 0 0 228.07457167793126 0 228.07457167793126 0 24.52938981054004 0 0 0 1.6307196863200843 0 0.3494850021680094 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.3169 + + 114 NaN NaN 126018.7 NaN 4873 2191 7065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7067 39.253 NaN 140860 35 0 15181 0.261 + 21708 QADFLDKQM 9 44 556.2583217080297 1110.5020904828593 2 556.2581787109375 MULTI HCD FTMS 0 0 0 7065 78431.421875 0.7704260256573283 -4 0.09881591796875 2 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 41.95555342248728 0.056367691549927025 1 D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 7 5 46.33 0 0 4.172 0 0 199.10080145669662 0 199.10080145669662 0 26.153113369619305 0 0 0 1.110924374808178 0 0 0.3494850021680094 D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 4.172 - 119 + NaN NaN 110088.1 NaN 4874 2191 7065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7068 39.256 NaN 127780 35 0 20510 0.264 -1 VYTRHMTWI 9 39 408.20603883039854 1221.5962870913957 3 408.20635986328125 MULTI HCD FTMS 0 0 0 7065 25524.576171875 0.22485966684813394 20 -0.5433731079101562 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 12.174745833636585 0.2551692358394414 1 VY 2 -1 37.959 0 0 3.1073 0 0 0 956.4400866858471 956.4400866858471 11.989700043360187 0 0 0 0 0 2 0 0 VY 3.1073 + + 6 + NaN NaN 99731 NaN 4875 2191 7065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7069 39.26 NaN 126320 35 0 15983 0.261 + 35144 YVGSGERIP 9 42 489.2569652009193 976.4993774686386 2 489.2687072753906 MULTI HCD FTMS 0 0 0 7065 10595.6884765625 0.22743795588795968 20 -0.5433731079101562 4 Unmodified _YVGSGERIP_ REV__ENSG00000118156|ENST00000391901|ZNF541 7.289230182591677 0.29575926068275815 1 [YV]SG 4 -1 25.952 0 0 2.6576 0 0 0 567.2930535763136 567.2930535763136 7.368303613050777 0 0 0 0 0 1.6989700043360187 0 0 [YV]SG 2.6576 - 32 NaN NaN 99816.4 NaN 4876 2191 7065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7070 39.263 NaN 88859 35 0 12451 0.261 + 19032 NDGDKGFLP 9 27 481.73144313988104 961.4483333465621 2 481.7141418457031 MULTI HCD FTMS 0 0 0 7065 3370.2255859375 0.2759017965098226 -4 0.09881591796875 5 Unmodified _NDGDKGFLP_ ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF 4.75600775471527 0.31496297302216103 1 PD 2 8 14.776 0 0 1.5369 0 0 131.13019440833642 615.2199801080686 746.3501745164051 0 0 0 0 0 0 0 0.3807196863200844 0 PD 1.5369 - 9 + NaN NaN 100283.1 NaN 4877 2191 7065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7071 39.266 NaN 56741 35 0 7582.1 0.261 + 3522 EIFRHILQR 9 40 404.57168452183475 1210.6932241657044 3 404.57177734375 MULTI HCD FTMS 0 0 0 7065 2722.093994140625 0.17715575334266243 1 -0.023162841796875 6 Unmodified _EIFRHILQR_ ENSG00000187688|ENST00000338560|TRPV2 1.0714618166137932 0.3428945748894048 1 PP 2 9 7.9588 0 0 0.65738 0 0 866.6177064428513 146.94980798892814 1013.5675144317794 0 0 0 0 0 0 0 0 0 PP 0.65738 - 5 + NaN NaN 97859.8 NaN 4878 2191 7065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7073 39.272 NaN 306920 35 0 22514 0.327 + 31597 VYIKHPVSL 9 63 528.3159664070681 1054.6173798809361 2 528.31591796875 MULTI HCD FTMS 0 0 0 7072 100579.1484375 0.06927197413367545 17 -0.4638481140136719 1 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 62.57269311338072 0.013982455292112035 1 VY{I|L}KH[VP]{[TV]|[{I|L}S]} 9 0 + 75.753 0 0 7.183 7.183 95.544 0 0 0 67.5262903823031 15.021205936218323 15.021205936218323 75.75311547986352 0 1.555462187404089 2 1.086696871556164 0 + + VY{I|L}KH[VP]{[TV]|[{I|L}S]} 7.183 + + 248 + NaN NaN 136668.1 NaN 4879 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7074 39.276 NaN 97664 35 0 8323.2 0.261 + 202 AETVRYSMCT 10 47 580.756873986535 1159.4991950398698 2 580.7572021484375 MULTI HCD FTMS 0 0 0 7072 44133.15234375 0.02692121492062606 32 -0.8956413269042969 2 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 12.240655878213236 0.39661705172222156 1 S{[SA]|[TG]}E 4 9 25.93 0 0 2.2363 0 0 353.1065077382479 429.22556482486567 782.3320725631136 0 0 0 0 0 1.1989700043360187 0 0.7742275032520141 0 S{[SA]|[TG]}E 2.2363 - 36 + NaN NaN 94869.1 NaN 4880 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7075 39.279 NaN 123580 35 0 28777 0.264 -1 0 37 416.22775484842754 415.22047838182755 1 416.22796630859375 MULTI HCD FTMS 0 0 0 7072 42469.03515625 0.12579759210770275 67 -1.8627700805664062 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 109641.7 NaN 4881 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7076 39.283 NaN 95539 35 0 8404.9 0.261 + 7266 FTCKETSRPF 10 53 405.8666291397316 1214.5780580193948 3 405.8668212890625 MULTI HCD FTMS 0 0 0 7072 28367.681640625 0.9206512473580228 -1 0.023162841796875 4 Unmodified _FTCKETSRPF_ ENST00000477638.1_1_10:116354806-116370421:-|nuORF 3.5964929083625545 0.45626689593999237 1 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.2749 0 0 1049.4989392223229 0 1049.4989392223229 0 12.385606273598313 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2749 + + 8 + NaN NaN 111520.7 NaN 4882 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7077 39.286 NaN 124060 35 0 27305 0.261 + 3189 ECWEFYSAI 9 34 574.2416339184367 1146.4687149036733 2 574.2410888671875 MULTI HCD FTMS 0 0 0 7072 43290.4765625 0.7610499894347846 -2 0.042919158935546875 5 Unmodified _ECWEFYSAI_ ENST00000374024.3_1_1:27721341-27721638:+|nuORF 11.640296217721598 0.25978676193971967 1 EA{I|L} 3 6 30.005 0 0 2.6172 0 0 815.2917347638687 0 815.2917347638687 0 19.431890546242343 0 0 0 0.3807196863200844 0 0 0 EA{I|L} 2.6172 - 16 NaN NaN 99106.5 NaN 4883 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7078 39.289 NaN 61849 35 0 14887 0.261 -1 RYLEKPMEI 9 27 597.8152163227822 1193.6158797123644 2 597.81396484375 MULTI HCD FTMS 0 0 0 7072 15896.4267578125 0.16297926168985458 -11 0.28076171875 6 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 K 1 -1 8.5392 0 0 0.7154 0 0 504.2271486838753 558.2713717096311 1062.4985203935064 0 0 0 0 0 0.3054621874040891 0 0 0 K 0.7154 + + 1 + NaN NaN 111478.4 NaN 4884 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7079 39.293 NaN 86853 35 0 14746 0.261 + 11887 KFIDTTSKF 9 29 543.79515636783 1085.57575980246 2 543.795654296875 MULTI HCD FTMS 0 0 0 7072 17725.123046875 0.002078625202364046 -8 0.19808197021484375 7 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 31.635753872319068 0.10374135269456516 1 K{M(Oxidation (M))|F}{I|L}DT 5 4 52.563 0 0 4.8419 0 0 0 478.22773157291255 478.22773157291255 16.377268672201453 0 0 0 0 1.5 0 0.5 0 + K{M(Oxidation (M))|F}{I|L}DT 4.8419 + + 48 + NaN NaN 93349.5 NaN 4885 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7080 39.296 NaN 12067 35 0 4475.5 0.261 + -1 RCRAKQRPP 9 11 584.8273465243481 NaN 0 584.8270263671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _RC(Carbamidomethyl (C))RAKQRPP_ REV__ENST00000262622.4_1_19:34175671-34262890:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86837.2 NaN 4886 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7081 39.299 NaN 44729 35 0 7117.3 0.264 + 28222 TLEEFSYEFF 10 42 437.863542241086 NaN 0 437.86370849609375 PEAK HCD FTMS 0 0 0 7072 3240.080322265625 0.46399559337061697 1 -0.03318023681640625 9 Unmodified _TLEEFSYEFF_ ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF;nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B 0.776531954647913 0.3395196853010637 1 {I|L} 1 9 3.9794 0 0 0.45546 0 0 454.5432333085408 303.0627840631469 757.6060173716877 0 0 0 0 0 0 0 0 0 + {I|L} 0.45546 + + 1 + NaN NaN 92458.1 NaN 4887 2192 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7083 39.305 NaN 1605900 35 0 221500 0.327 + 11615 IYTSSVNRL 9 90 526.7904706682206 1051.566388403241 2 526.7903442382812 MULTI HCD FTMS 0 0 0 7082 742320.3125 0.16997413649696852 -4 0.10904693603515625 1 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 152.88595553498965 5.775426743015152E-06 1 {I|L}YTSSVNR{I|L} 9 0 + 106.84 0 0 10.16 10.16 92.486 0 0 0 24.260139618586365 7.781964799699992 7.781964799699992 7.781964799699992 0 2.7179001828205482 1.6989700043360187 1.4476212463643423 0.2614393726401688 + + {I|L}YTSSVNR{I|L};[Y{I|L}]TSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVGGR{I|L};[YT]{I|L}SSVNR{I|L};[YT]{I|L}SSVGGR{I|L};{[QN]|[E{I|L}]|[KN]}P[DP]VNR{I|L};{[QN]|[E{I|L}]|[KN]}P[DP]VGGR{I|L};{[QN]|[E{I|L}]|[KN]}P[DP]VN[VG]{I|L};{[QN]|[E{I|L}]|[KN]}A[HT]VN[VG]{I|L} 10.16;9.4203;9.2847;8.5446;6.6645;5.7888;3.5641;2.6885;2.6885;2.4022 +;+;-;-;-;-;-;-;-;- + 1185 + NaN NaN 317963.1 NaN 4888 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7084 39.309 NaN 115470 35 0 29411 0.261 + -1 TLCTGCDM 8 34 458.6642826675413 915.3140124018826 2 458.6645812988281 MULTI HCD FTMS 0 0 0 7082 53007.94921875 0.5573310654631085 2 -0.059528350830078125 2 Carbamidomethyl (C),Oxidation (M) _TLC(Carbamidomethyl (C))TGCDM(Oxidation (M))_ REV__ENSG00000105875|ENST00000354475|WDR91 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100370.5 NaN 4889 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7085 39.313 NaN 90067 35 0 9273.4 0.261 + 27749 TATKIEITM 9 35 512.2731414816805 1022.5317300301609 2 512.2731323242188 MULTI HCD FTMS 0 0 0 7082 46029.26953125 0.24640425436169353 22 -0.6030807495117188 3 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 43.77239144664712 0.04802738721622131 1 {I|L}T{M(Oxidation (M))|F} 3 6 39.169 0 0 3.8306 0 0 643.352830955275 0 643.352830955275 0 30.21652514092061 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + {I|L}T{M(Oxidation (M))|F} 3.8306 + + 20 NaN NaN 94488.8 NaN 4890 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7086 39.316 NaN 235810 35 0 41269 0.261 -1 SAAAVDAGMAM 11 38 505.7180835284424 1009.4216141236848 2 505.7183532714844 MULTI HCD FTMS 0 0 0 7082 43940.23828125 0.7889300403354623 1 -0.029781341552734375 4 Oxidation (M) _SAAAVDAGMAM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 21.536976647645854 0.2694300281126922 1 V 1 -1 11.99 0 0 1.1878 0 0 300.14287984809727 607.1856769543303 907.3285568024276 0 0 0 0 0 0.5 0 0 0 V 1.1878 + + 29 + NaN NaN 110442.7 NaN 4891 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7087 39.319 NaN 62520 35 0 6138.9 0.261 -1 HPTGKMFIL 9 34 530.2863593624666 1058.558165791733 2 530.2861328125 MULTI HCD FTMS 0 0 0 7082 17212.267578125 0.11736325493952983 36 -0.9916267395019531 5 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 3.944395688203298 0.32111559684428237 1 T{[ES]|[DT]|[{I|L}C]} 3 -1 13.952 0 0 1.3181 0 0 723.3978749005875 0 723.3978749005875 0 13.952424927286843 0 0 0 0.5 0 0 0 T{[ES]|[DT]|[{I|L}C]} 1.3181 - 3 NaN NaN 87677.4 NaN 4892 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7088 39.323 NaN 32015 35 0 8240.1 0.261 + 19153 NGSLEQTEEPE 11 18 616.768447682864 1231.522342432528 2 616.768310546875 MULTI HCD FTMS 0 0 0 7082 14502.2197265625 0.4798757697178945 -9 0.23126220703125 6 Unmodified _NGSLEQTEEPE_ ENSG00000125386|ENST00000637812|FAM193A;ENST00000513898.5_1_4:2696860-2717089:+|nuORF;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312|FAM193A 0.9622753412299311 0.4147004537482263 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91902.2 NaN 4893 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7089 39.326 NaN 69140 35 0 11343 0.263 + 18632 MYDDIAHS 8 34 476.1984905395241 NaN 0 476.1983642578125 PEAK HCD FTMS 0 0 0 7082 15612.9443359375 0.5156609759749309 117 -3.260181427001953 7 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 3.4949 0 0 0.36773 0 0 426.2210644757294 406.1118563287719 832.3329208045013 0 0 0 0 0 0 0 0 0 + D 0.36773 + + 2 + NaN NaN 85819.5 NaN 4894 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7090 39.329 NaN 33889 35 0 2729.6 0.261 + 9181 HPLEFSPTGR 10 26 570.7934870072348 1139.5724210812696 2 570.7945556640625 MULTI HCD FTMS 0 0 0 7082 15041.72265625 0.10384496601175544 28 -0.7818489074707031 8 Unmodified _HPLEFSPTGR_ ENST00000555168.1_1_X:119271017-119378716:-|nuORF 2.735195868890462 0.4608258780945842 1 HPV 3 8 26.198 0 0 2.2989 0 0 0 803.3756807916624 803.3756807916624 26.197887582883936 0 0 0 0 0 0 0 0 HPV 2.2989 - 3 + NaN NaN 88416.1 NaN 4895 2193 7082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7092 39.334 NaN 1662300 35 0 409450 0.327 + 19183 NIEGPDAKL 9 80 478.7560490870676 955.4975452409352 2 478.7561950683594 MULTI HCD FTMS 0 0 0 7091 1258101.375 0.30974754593166887 5 -0.14125442504882812 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 132.37960578797484 0.0004606598083464779 1 {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 9 0 + 103.84 0 0 10.868 10.868 96.426 0 0 0 18.200054037348664 16.478174818886373 16.478174818886373 14.745462655597095 0 2.3494850021680094 2 1 2.0501648626366045 + + {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};{I|L}NEG[DP]AK{I|L};N{I|L}EG[DP]AK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]G[DP]AK{I|L};{[QN]|[E{I|L}]|[KN]}NG[DP]AK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QG[PS]{I|L}N{I|L};{[QN]|[E{I|L}]|[KN]}GGG[DP]AK{I|L} 10.868;9.3244;8.9628;8.8246;8.6676;8.3607;7.7039;7.1792;7.1244;6.2155 +;-;-;+;-;-;-;-;-;- + 500 NaN NaN 339596.5 NaN 4896 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7093 39.339 NaN 47744 35 0 9522.6 0.261 -1 0 23 441.29743767595807 440.2901612093581 1 441.2974548339844 MULTI HCD FTMS 0 0 0 7091 34065.2421875 0.6951502822625001 1 -0.02974700927734375 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87236.6 NaN 4897 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7094 39.342 NaN 63121 35 0 7295.7 0.261 + -1 LPMFLHCI 8 35 523.7631826065156 1045.511812279831 2 523.7633056640625 MULTI HCD FTMS 0 0 0 7091 12921.2763671875 0.22481296774205825 3 -0.08592605590820312 3 Carbamidomethyl (C),Oxidation (M) _LPM(Oxidation (M))FLHC(Carbamidomethyl (C))I_ REV__ENST00000412830.7_1_12:108104209-108104269:+|nuORF 6.354104778181461 0.5325651638111438 1 VTS{M(Oxidation (M))|F} 4 -1 28.928 0 0 2.7669 0 0 593.3183746351029 0 593.3183746351029 0 6.709412807357751 0 0 0 0 0 0 0 VTS{M(Oxidation (M))|F} 2.7669 - 18 + NaN NaN 90516.3 NaN 4898 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7095 39.346 NaN 24826 35 0 6134.2 0.261 + 3500 EHSRFKTDDL 10 19 624.3046148327517 1246.5946767323032 2 624.8067626953125 MULTI HCD FTMS 0 0 0 7091 11375.3212890625 0.6720882834110702 1 -0.02974700927734375 4 Unmodified _EHSRFKTDDL_ REV__ENSG00000111786|ENST00000229390|SRSF9;REV__ENST00000548792.1_1_12:120899824-120901956:-|nuORF;REV__ENST00000603963.1_1_12:120899824-120902572:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91861.2 NaN 4899 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7096 39.349 NaN 38608 35 0 3156.2 0.261 + -1 KMRGVKRMC 9 27 570.7934870072348 1139.5724210812696 2 570.7933349609375 MULTI HCD FTMS 0 0 0 7091 15922.4541015625 0.10992535514630436 29 -0.8050613403320312 5 2 Oxidation (M) _KM(Oxidation (M))RGVKRM(Oxidation (M))C_ REV__ENSG00000166589|ENST00000299752|CDH16;REV__nc|ENSG00000166589|O75309-2|CDH16;REV__nc|ENSG00000166589|O75309-3|CDH16;REV__nc|ENSG00000166589|O75309-4|CDH16 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90336.2 NaN 4900 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7097 39.352 NaN 24893 35 0 5379.2 0.261 + 12524 KRYSPQFHI 9 18 588.3195649499503 1174.6245769667005 2 588.3187255859375 MULTI HCD FTMS 0 0 0 7091 8358.201171875 0.2351154584521758 6 -0.15740585327148438 6 Unmodified _KRYSPQFHI_ REV__ENST00000524461.1_1_11:16769614-16769671:+|nuORF 2.9952420565917617 0.3283108881486655 1 H{I|L} 2 -1 19.464 0 0 1.657 0 0 906.4681263654312 0 906.4681263654312 0 19.463950151760656 0 0 0 0 0 0 0 H{I|L} 1.657 + + 1 NaN NaN 83260.4 NaN 4901 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7098 39.356 NaN 39020 35 0 5285.1 0.261 -1 HPVLKEMEVQ 10 22 613.3159539454991 1224.6173549577982 2 613.314697265625 MULTI HCD FTMS 0 0 0 7091 21011.6328125 0.12448339987749246 48 -1.342041015625 7 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 1 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4101656549436 888.4101656549436 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 4 + NaN NaN 84818 NaN 4902 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7099 39.359 NaN 35851 35 0 5443 0.261 + -1 GFCIWIWCWRR 11 23 547.2620696101649 1638.7643794306946 3 547.74755859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C) _GFC(Carbamidomethyl (C))IWIWC(Carbamidomethyl (C))WRR_ REV__ENST00000482384.1_1_1:109756594-109756711:+|nuORF 0.09484139111097674 0.41850472438158626 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87765.1 NaN 4903 2194 7091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7101 39.364 NaN 307870 35 0 67030 0.327 -1 LHHFDLCLSL 10 53 432.88495837798985 NaN 0 432.8851318359375 PEAK HCD FTMS 0 0 0 7100 161878.6875 0.6799573868073945 -34 0.8895263671875 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LHHFDLC(Carbamidomethyl (C))LSL_ ENST00000477216.1_1_3:170077681-170077735:+|nuORF 3.876331618118854 0.3368666864104206 1 S 1 -1 7.3464 0 0 0.85051 0 0 645.6288054505126 128.0714510553344 773.7002565058469 0 0 0 0 0 0 0 0.2742275032520141 0 S 0.85051 + + 13 + NaN NaN 134643.7 NaN 4904 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7102 39.369 NaN 342690 35 0 63947 0.261 + 9052 HPESHVLVL 9 62 515.7877958579932 1029.5610387827862 2 515.7877197265625 MULTI HCD FTMS 0 0 0 7100 79973.8203125 0.7532034686661543 -3 0.09270858764648438 2 Unmodified _HPESHVLVL_ ENSG00000128274|ENST00000642412|A4GALT 50.855029805455786 0.030374663808198754 1 HVDC{I|L}V{I|L} 7 5 58.444 0 0 5.6766 0 0 232.13784987617345 0 232.13784987617345 0 15.947938291282249 0 0 0 0.9802046884880937 0 1.1421590589602533 0 HVDC{I|L}V{I|L} 5.6766 - 407 NaN NaN 134410.5 NaN 4905 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7103 39.372 NaN 197990 35 0 19919 0.261 + 13895 KYQELYPAI 9 47 562.80520567347 NaN 0 562.7952880859375 PEAK HCD FTMS 0 0 0 7100 17958.634765625 1 0 0 3 Unmodified _KYQELYPAI_ REV__PMCH|p.S62Y|1|0.22|ENSG00000183395|chr12:102197586-102197586|G/T|missense_variant 8.745405648335112 0.25286782695573473 1 PGGD 4 -1 17.155 0 0 1.5268 0 0 137.07723307030022 657.3488253229124 794.4260583932125 0 0 0 0 0 0.4247425010840047 0 0 0 PGGD 1.5268 - 66 + NaN NaN 122358.7 NaN 4906 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7104 39.376 NaN 318150 35 0 28657 0.261 + 20952 PLEKDKIE 8 70 486.2742068289386 970.5338607246772 2 486.2738952636719 MULTI HCD FTMS 0 0 0 7100 87870.3359375 0.5904841019151538 -2 0.059528350830078125 4 Unmodified _PLEKDKIE_ REV__ENSG00000179583|ENST00000324288|CIITA;REV__ENST00000570546.5_1_16:10971115-11002148:+|nuORF;REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF;REV__nc|ENSG00000179583|P33076-2|CIITA;REV__nc|ENSG00000179583|P33076-4|CIITA;REV__nc|ENSG00000179583|P33076|CIITA 11.640296217721598 0.50814828952472 1 ATA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[{I|L}A] 8 -1 37.752 0 0 3.8899 0 0 149.10552535864525 0 149.10552535864525 0 23.148350154927826 0 0 0 0 0 0.7742275032520141 0.7614393726401688 ATA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[{I|L}A] 3.8899 - 221 + NaN NaN 125755.1 NaN 4907 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7105 39.379 NaN 58702 35 0 15478 0.261 -1 0 26 441.7879131732742 881.5612734133484 2 441.7879333496094 MULTI HCD FTMS 0 0 0 7100 42745.57421875 0.5184501907955898 8 -0.18956756591796875 5 NaN NaN 1 N 1 -1 5.4846 0 0 0.62214 0 0 183.1606243376787 581.3447970025999 764.5054213402786 0 0 0 0 0 0 0 0 0 N 0.62214 - 3 + NaN NaN 89096.2 NaN 4908 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7106 39.382 NaN 108000 35 0 17211 0.261 + 9892 IASFYWTLT 9 27 551.2841085109455 1100.553664088691 2 551.2843017578125 MULTI HCD FTMS 0 0 0 7100 36208.390625 0.2273089494517619 18 -0.4871063232421875 6 Unmodified _IASFYWTLT_ ENSG00000105223|ENST00000409735|PLD3 10.823927491677226 0.26684000660059787 1 T[{I|L}T] 3 6 19.705 0 0 1.7905 0 0 767.3619862287125 0 767.3619862287125 0 8.467874862246564 0 0 0 0.5 0 0.4247425010840047 0 + T[{I|L}T] 1.7905 + + 33 NaN NaN 101804.1 NaN 4909 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7107 39.385 NaN 80911 35 0 6529.3 0.261 + -1 LWSFPCGL 8 38 490.24061992977374 NaN 0 490.25311279296875 PEAK HCD FTMS 0 0 0 7100 3378.595703125 1 0 0 7 Carbamidomethyl (C) _LWSFPC(Carbamidomethyl (C))GL_ REV__CENPM|p.S176Pfs*28|1|0.14|ENSG00000100162|chr22:41939074-41939074|G/-|frameshift_variant 2.577480529830294 0.38822285293237185 1 E 1 -1 5.4846 0 0 0.56052 0 0 131.06692322426244 715.3512667291624 846.4181899534249 0 0 0 0 0 0 0 0 0 E 0.56052 - 2 + NaN NaN 90099.4 NaN 4910 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7108 39.389 NaN 54864 35 0 6149.1 0.261 + 8890 HPASDKIEAYM 11 29 631.2978273843278 1260.5811018354555 2 631.2976684570312 MULTI HCD FTMS 0 0 0 7100 29789.431640625 0.2977861595425224 -5 0.13562774658203125 8 Unmodified _HPASDKIEAYM_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 11.065280125700339 0.3606702632373656 1 HPA 3 8 31.198 0 0 2.4749 0 0 0 952.4057711236936 952.4057711236936 25.713337517843655 0 0 0 0 0.5 0 0 0 + HPA 2.4749 + + 7 + NaN NaN 91902 NaN 4911 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7109 39.392 NaN 20369 35 0 7274.7 0.261 + 16337 LRMWKLQSF 9 16 604.8320922851562 NaN 0 604.8320922851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LRMWKLQSF_ ENST00000474018.1_1_6:170089229-170089316:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87743.2 NaN 4912 2195 7100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7111 39.397 NaN 657930 35 0 166670 0.327 + 4743 EYSRSSVL 8 44 470.7404760111552 939.4663990891104 2 470.7403564453125 MULTI HCD FTMS 0 0 0 7110 520157.59375 1 0 0 1 Unmodified _EYSRSSVL_ ENST00000461888.5_1_1:160195382-160195415:-|nuORF 29.081581746732265 0.3711897268585781 1 [YT][RD]SSV{I|L} 8 2 + 59.87 0 0 6.3728 6.3728 93.686 0 0 0 14.436974992327123 46.05774396488272 14.436974992327123 59.87002527416834 0 0.5 1.6989700043360187 0.8494850021680094 0 [YT][RD]SSV{I|L} 6.3728 - 64 NaN NaN 177912.4 NaN 4913 2196 7110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7112 39.402 NaN 311250 35 0 28632 0.261 + 86 ADKMDMSL 8 58 492.7042814229636 983.3940099127273 2 492.7042541503906 MULTI HCD FTMS 0 0 0 7110 162770.921875 0.7377008827549812 -10 0.27429962158203125 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 67.83816525789305 0.03219022055258227 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 53.849 0 0 5.4759 0 0 228.0751209943375 0 228.0751209943375 0 25.688812894078126 0 0 0 1.7302046884880937 0 0.3807196863200844 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.4759 + + 80 NaN NaN 139200.8 NaN 4914 2196 7110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7113 39.405 NaN 134220 35 0 14887 0.261 + 21709 QADFLDKQM 9 40 556.2583217080297 1110.5020904828593 2 556.2584228515625 MULTI HCD FTMS 0 0 0 7110 84206.9609375 0.8271587164536537 1 -0.02306365966796875 3 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 43.77239144664712 0.04802738721622131 1 [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F} 9 0 + 55.99 0 0 5.0419 5.0419 88.296 0 0 0 30.02108090567568 14.973024840566467 14.973024840566467 13.455612550363796 0 0.4247425010840047 0 0.23965182871044374 0.7742275032520141 + + [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};[QA]D{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F} 5.0419;3.8302 +;- + 147 + NaN NaN 101898.8 NaN 4915 2196 7110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7114 39.409 NaN 156760 35 0 14776 0.261 -1 FSIFLTMMV 9 54 560.7768202702653 NaN 0 560.7658081054688 PEAK HCD FTMS 0 0 0 7110 6220.51025390625 0.4180403524484766 -3 0.09264373779296875 4 2 Oxidation (M) _FSIFLTM(Oxidation (M))M(Oxidation (M))V_ tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1 11.640296217721598 0.23883959125015683 1 SVH{M(Oxidation (M))|F}VT 6 -1 32.88 0 0 2.937 0 0 147.09155616850666 299.11484705142817 446.2064032199348 0 0 0 0 0 0 0 0.5 0 SVH{M(Oxidation (M))|F}VT 2.937 - 206 + NaN NaN 105131.8 NaN 4916 2196 7110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7115 39.412 NaN 72457 35 0 7517.2 0.261 -1 PRYGMCPL 8 27 497.2356497084418 992.4567464836837 2 497.2357482910156 MULTI HCD FTMS 0 0 0 7110 5971.3193359375 0.12492343763956414 4 -0.09454345703125 5 Carbamidomethyl (C) _PRYGMC(Carbamidomethyl (C))PL_ ENSG00000197020|ENST00000358296|ZNF100 2.302733041254933 0.5385759549224092 1 A{I|L} 2 -1 14.693 0 0 1.4804 0 0 790.321092674025 0 790.321092674025 0 13.433677739595034 0 0 0 0 0 0 0 A{I|L} 1.4804 - 2 NaN NaN 96815.5 NaN 4917 2196 7110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7116 39.415 NaN 65524 35 0 6501.3 0.261 + 2730 DVTEYAVQR 9 38 540.7701552080973 1079.5257574829945 2 541.2716674804688 MULTI HCD FTMS 0 0 0 7110 12049.251953125 0.48738873663628907 1 -0.02306365966796875 6 Unmodified _DVTEYAVQR_ ENSG00000100106|ENST00000644935|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP 31.26834338654808 0.10542797264966089 1 [DV]{[ET]|[MV]}YAVQR 9 0 + 54.639 0 0 5.0614 5.0614 91.36 0 0 0 33.6696871556164 9.889917747712644 9.889917747712644 54.638787285696964 0 1.5484550065040281 1.3010299956639813 0 0 + + [DV]{[ET]|[MV]}YAVQR 5.0614 + + 38 + NaN NaN 96326.4 NaN 4918 2196 7110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7118 39.42 NaN 322590 35 0 59816 0.327 + 17852 MIANDVHTL 9 60 515.2553957305801 1028.49623852796 2 515.2554931640625 MULTI HCD FTMS 0 0 0 7117 102535.53125 0.8609699782385214 -2 0.056179046630859375 1 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 86.33184430468982 0.004622086694044132 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVHT{I|L} 9 0 + 83.389 0 0 8.1078 8.1078 94.203 0 0 0 25.48963451112506 65.48368191316108 25.48963451112506 16.70818753952375 0 2.1549471895720984 2 0.3807196863200844 0.75 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVHT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AGGDVHT{I|L};[QT]{I|L}CD[HT]V{I|L} 8.1078;6.4833;2.7582 +;-;- + 169 NaN NaN 156083.4 NaN 4919 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7119 39.425 NaN 110340 35 0 11007 0.261 + 19033 NDGDKGFLP 9 43 481.73144313988104 961.4483333465621 2 481.7144470214844 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _NDGDKGFLP_ ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF 4.75600775471527 0.31496297302216103 1 PD 2 8 10.969 0 0 1.1409 0 0 131.1278623538763 615.2139986627561 746.3418610166325 0 0 0 0 0 0 0 0 0 PD 1.1409 - 32 + NaN NaN 102455.9 NaN 4920 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7120 39.428 NaN 119790 35 0 20436 0.261 + 5272 FFFFLFFF 8 41 581.2934692863244 1160.5723856394486 2 581.2938232421875 MULTI HCD FTMS 0 0 0 7117 21063.5703125 0.5817442356358712 1 -0.029567718505859375 3 Unmodified _FFFFLFFF_ ENST00000479872.5_1_1:165877514-165877814:+|nuORF;ENST00000524930.1_1_6:130504375-130535627:-|nuORF;REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF;REV__ENST00000380956.8_1_6:407613-407766:+|nuORF;REV__ENST00000382952.7_2_4:1205601-1205772:-|nuORF;REV__ENST00000479872.5_1_1:165877514-165877814:+|nuORF 6.354104778181461 0.5325651638111438 1 ETG{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 6 6 28.589 0 0 2.4633 0 0 432.24800307441564 0 432.24800307441564 0 21.598878259206842 0 0 0 0.3182503180159344 0 0 0 ETG{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 2.4633 - 18 NaN NaN 101736.2 NaN 4921 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7121 39.431 NaN 103070 35 0 15410 0.264 + 18521 MSTKFMSFML 10 36 408.1943630756628 NaN 0 408.2065734863281 PEAK HCD FTMS 0 0 0 7117 12022.658203125 1 0 0 4 Unmodified _MSTKFMSFML_ REV__ENSG00000186684|ENST00000664447|CYP27C1;REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1;REV__nc|ENSG00000186684|Q4G0S4|CYP27C1 6.723162845929126 0.3344301934401713 1 M 1 -1 5.4846 0 0 0.67347 0 0 552.2425336691007 128.07175623111564 680.3142899002163 0 0 0 0 0 0 0 0 0 M 0.67347 + + 5 + NaN NaN 102487.2 NaN 4922 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7122 39.435 NaN 92214 35 0 13984 0.261 -1 LGMWEPLMM 9 38 570.2508117089127 1138.4870704846253 2 570.2505493164062 MULTI HCD FTMS 0 0 0 7117 41284.51171875 0.713536220950828 -4 0.1157073974609375 5 2 Oxidation (M) _LGM(Oxidation (M))WEPLM(Oxidation (M))M_ ENST00000435695.1_1_7:92546287-92546338:+|nuORF 2.0597508629832335 0.3354026079994024 1 [R{M(Oxidation (M))|F}]K 3 -1 7.4473 0 0 0.65414 0 0 0 704.1998139751128 704.1998139751128 1.962724883926656 0 0 0 0 0 0 0 0 [R{M(Oxidation (M))|F}]K 0.65414 - 14 NaN NaN 101264.6 NaN 4923 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7123 39.438 NaN 78159 35 0 13313 0.261 -1 PACVTEQDSV 10 27 553.245762875437 1104.4769728176739 2 553.246826171875 MULTI HCD FTMS 0 0 0 7117 33366.80078125 1 0 0 6 Carbamidomethyl (C) _PAC(Carbamidomethyl (C))VTEQDSV_ AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|4|1|sense 1.6526216038709556 0.46655611578153744 1 T 1 -1 4.6041 0 0 0.41686 0 0 576.2490197920864 424.16013513736567 1000.4091549294521 0 0 0 0 0 0 0 0 0 T 0.41686 + + 1 + NaN NaN 91387.5 NaN 4924 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7124 39.441 NaN 57164 35 0 9987.9 0.261 -1 DSFLMYSD 8 25 497.196023352751 992.377493772302 2 497.1960144042969 MULTI HCD FTMS 0 0 0 7117 19416.455078125 0.9062479004577446 1 -0.029567718505859375 7 Oxidation (M) _DSFLM(Oxidation (M))YSD_ ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 2.302733041254933 0.5385759549224092 1 {I|L} 1 -1 5.4846 0 0 0.55267 0 0 131.96289101289648 744.3114718072874 876.2743628201838 0 0 0 0 0 0 0 0 0 {I|L} 0.55267 + + 3 + NaN NaN 92243.1 NaN 4925 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7125 39.445 NaN 319850 35 0 38279 0.261 + 7347 FVDEHEPSM 9 82 545.7284871703515 1089.442421407503 2 545.727783203125 MULTI HCD FTMS 0 0 0 7117 27204.68359375 0.39415077316247354 -4 0.1157073974609375 8 Unmodified _FVDEHEPSM_ ENSG00000165030|ENST00000297689|NFIL3 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}{I|L}D[YQ]K{M(Oxidation (M))|F} 7 6 28.153 0 0 2.5841 0 0 129.95384826472792 0 129.95384826472792 0 9.470427525053303 0 0 0 0 0 0.3807196863200844 0.7134679910804405 {M(Oxidation (M))|F}{I|L}D[YQ]K{M(Oxidation (M))|F} 2.5841 - 303 + NaN NaN 130943 NaN 4926 2197 7117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7127 39.45 NaN 6073800 35 0 682660 0.327 + 11888 KFIDTTSKF 9 113 543.79515636783 1085.57575980246 2 543.7955322265625 MULTI HCD FTMS 0 0 0 7126 6666831.5 0.7818193385268308 -2 0.052631378173828125 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 187.1423235319798 5.87619274747922E-13 1 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 110.8 0 0 10.207 10.207 89.49 0 0 0 55.103481712895565 10.056584229283843 10.056584229283843 0.9640156839957825 0 3.1989700043360187 0 1.9749073637206092 0.5242275032520141 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}DTT{M(Oxidation (M))|F}SK;{M(Oxidation (M))|F}K{I|L}DTT{M(Oxidation (M))|F}SK;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTS{M(Oxidation (M))|F}K;[Y{I|L}]N{I|L}TTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F} 10.207;10.118;9.8667;8.5815;8.1124;7.6717;7.5829;6.8272;6.7886;6.4345 +;-;+;-;-;-;-;-;-;- + 6262 + NaN NaN 797207.3 NaN 4927 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7128 39.454 NaN 5763000 35 0 762450 0.236 + 11616 IYTSSVNRL 9 101 526.7904706682206 1051.566388403241 2 526.7908325195312 MULTI HCD FTMS 0 0 0 7126 4020220.25 0.9205372047816311 1 -0.025760650634765625 2 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 165.7202790778711 6.154960448002056E-09 1 {I|L}YTSSVNR{I|L} 9 0 + 104.26 0 0 9.9146 9.9146 90.142 0 0 0 17.634271953159853 2.907381323364305 2.907381323364305 2.907381323364305 0 2.693672679568534 1.6989700043360187 1.4749073637206092 0 + + {I|L}YTSSVNR{I|L};[Y{I|L}]TSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVGGR{I|L};[YT]{I|L}SSVNR{I|L};[Y{I|L}]TSS[RN]V{I|L};[YT]{I|L}SSVGGR{I|L};[YT]{I|L}SS[RN]V{I|L};{[MG]|[TS]}[Y{I|L}]SVNR{I|L};{[MG]|[TS]}[Y{I|L}]SVGGR{I|L} 9.9146;9.6381;9.039;8.5346;8.0522;7.4094;6.9486;5.8235;5.3394;4.2358 +;+;-;-;-;-;-;-;-;- + 2845 + NaN NaN 806810 NaN 4928 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7129 39.457 NaN 593110 35 0 116860 0.261 + 2305 DMHTEVTTL 9 45 531.7423516043784 1061.4701502755568 2 531.7418823242188 MULTI HCD FTMS 0 0 0 7126 234852.921875 0.2523894453143303 -5 0.14527511596679688 3 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 46.020951573049366 0.037705236580089195 1 VTT{I|L} 4 5 55.433 0 0 5.2223 0 0 629.2107976064651 0 629.2107976064651 0 35.76728783671072 0 0 0 1.5 0 0.8494850021680094 0 + VTT{I|L} 5.2223 + + 57 NaN NaN 177171.1 NaN 4929 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7130 39.461 NaN 76830 35 0 9048.9 0.261 + 3190 ECWEFYSAI 9 39 574.2416339184367 1146.4687149036733 2 574.2421264648438 MULTI HCD FTMS 0 0 0 7126 18959.078125 0.3333020874901464 4 -0.08425140380859375 4 Unmodified _ECWEFYSAI_ ENST00000374024.3_1_1:27721341-27721638:+|nuORF 7.289230182591677 0.29575926068275815 1 A{I|L} 2 7 18.583 0 0 1.6209 0 0 944.338182517775 0 944.338182517775 0 4.119543704721593 0 0 0 0 0 0 0 + A{I|L} 1.6209 + + 12 NaN NaN 92096 NaN 4930 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7131 39.464 NaN 87158 35 0 8765.8 0.264 + 7267 FTCKETSRPF 10 43 405.8666291397316 1214.5780580193948 3 405.8670349121094 MULTI HCD FTMS 0 0 0 7126 12624.2978515625 0.40971185842045266 5 -0.10382080078125 5 Unmodified _FTCKETSRPF_ ENST00000477638.1_1_10:116354806-116370421:-|nuORF 3.5964929083625545 0.45626689593999237 1 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.2024 0 0 1049.4991223277916 0 1049.4991223277916 0 8.661968799114844 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2024 + + 6 + NaN NaN 87632.6 NaN 4931 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7132 39.467 NaN 60532 35 0 5049 0.261 + -1 CCFDCRGCDM 10 37 613.1816844761395 NaN 0 613.3168334960938 PEAK HCD FTMS 0 0 0 7126 17181.115234375 1 0 0 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))CFDCRGCDM(Oxidation (M))_ REV__ENSG00000141644|ENST00000269468|MBD1;REV__MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant;REV__nc|ENSG00000141644|Q9UIS9-10|MBD1;REV__nc|ENSG00000141644|Q9UIS9-12|MBD1;REV__nc|ENSG00000141644|Q9UIS9-2|MBD1;REV__nc|ENSG00000141644|Q9UIS9-5|MBD1;REV__nc|ENSG00000141644|Q9UIS9-6|MBD1;REV__nc|ENSG00000141644|Q9UIS9-8|MBD1;REV__nc|ENSG00000141644|Q9UIS9-9|MBD1 0 0.34018428902965525 1 V 1 -1 6.9897 0 0 0.57089 0 0 233.8477306692726 888.4089449518186 1122.2566756210913 0 0 0 0 0 0 0 0 0 V 0.57089 - 5 + NaN NaN 88597.1 NaN 4932 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7133 39.471 NaN 25143 35 0 4821.9 0.261 + 33238 YFFLYIQTR 9 15 625.8306274414062 NaN 0 625.8306274414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YFFLYIQTR_ REV__ENST00000359297.6_1_1:36806610-36807063:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86227 NaN 4933 2198 7126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7135 39.475 NaN 562010 35 0 140480 0.327 + 19184 NIEGPDAKL 9 64 478.7560490870676 955.4975452409352 2 478.7559509277344 MULTI HCD FTMS 0 0 0 7134 384365.96875 0.09463181419697679 10 -0.2596321105957031 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 69.33821966488729 0.009302356455414924 1 N{I|L}EG[DP]AK{I|L} 9 0 + 74.575 0 0 7.8048 7.8048 96.269 0 0 0 51.38743756437101 9.137342758552691 9.137342758552691 60.65166884247503 0 2.048455006504028 2 0.4247425010840047 0 + + N{I|L}EG[DP]AK{I|L};{[DA]|[EG]}[DP]{[QV]|[N{I|L}]|[RA]|[KV]}AK{I|L};{[TV]|[{I|L}S]}[DP]{[QG]|[NA]}{I|L}N{I|L} 7.8048;1.4572;1.0273 +;-;- + 141 + NaN NaN 171524.5 NaN 4934 2199 7134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7136 39.48 NaN 115900 35 0 14332 0.261 + 20382 NYVEVTRKW 9 40 597.8152163227822 1193.6158797123644 2 597.8148803710938 MULTI HCD FTMS 0 0 0 7134 47686.609375 0.488910401490724 -4 0.11150741577148438 2 Unmodified _NYVEVTRKW_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 27.223235318498237 0.1251536255799991 1 [YN]V[KG]K[DG]KW 10 5 + 57.382 0 0 4.8074 4.8074 81.987 0 0 0 5.431825014007217 46.92471268044436 5.431825014007217 1.9897000433601875 0 1.3494850021680094 2 0 0.3252574989159953 [YN]V[KG]K[DG]KW;[YN]V[KG]KQ[TA]W;[YN][RK]KQ[TA]{[DA]|[EG]};[YN]V[KG]K{[WN]|[YH]}[VS];[YN]V[KG]{[WN]|[YH]}K[VS];[YN][RK]K[DG]K{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{[WN]|[YH]}K[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}K{[WN]|[YH]}[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.8074;4.6407;3.7409;3.7409;3.1959;3.0698;1.0992;0.5542 -;-;-;-;-;-;-;- 120 NaN NaN 90737 NaN 4935 2199 7134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7137 39.483 NaN 65661 35 0 6322.2 0.261 -1 TATKIEITM 9 27 512.2731414816805 1022.5317300301609 2 512.2734985351562 MULTI HCD FTMS 0 0 0 7134 39993.88671875 0.2140955947447557 28 -0.7775726318359375 3 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 36.506200033944 0.08138327636155518 1 {I|L}T{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.8818 0 0 643.3548023951985 0 643.3548023951985 0 34.20818753952375 0 0 0 1.3494850021680094 0 0 0 {I|L}T{M(Oxidation (M))|F} 3.8818 + + 11 + NaN NaN 85476.8 NaN 4936 2199 7134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7138 39.487 NaN 30855 35 0 7424.1 0.261 -1 MQCWRHGEI 9 23 616.768447682864 1231.522342432528 2 616.7681884765625 MULTI HCD FTMS 0 0 0 7134 17966.28125 0.5945009251253099 -3 0.07839202880859375 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))QC(Carbamidomethyl (C))WRHGEI_ ENST00000367321.7_1_6:151422724-151422787:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93057.8 NaN 4937 2199 7134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7140 39.492 NaN 141290 35 0 38993 0.327 + 30585 VNVLRPVN 8 33 455.77703249552286 909.5395120578457 2 455.7769775390625 MULTI HCD FTMS 0 0 0 7139 33188.6328125 0.5209991485609392 1 -0.01282501220703125 1 Unmodified _VNVLRPVN_ REV__ENSG00000132382|ENST00000254718|MYBBP1A;REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.6057 0 0 744.4939015615552 0 744.4939015615552 0 1.5321251377534377 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6057 - 19 + NaN NaN 103929.8 NaN 4938 2200 7139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7141 39.496 NaN 116890 35 0 12840 0.261 + 29996 VFKQMEYF 8 42 546.2661623468107 1090.5177717604213 2 546.7825317382812 MULTI HCD FTMS 0 0 0 7139 4957.76611328125 0.4490091511411774 1 -0.01282501220703125 2 Unmodified _VFKQMEYF_ tr|U7SGA3|U7SGA3_FUSNUPNPLAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02235PE=4SV=1 6.354104778181461 0.5325651638111438 1 H 1 8 6.9897 0 0 0.64095 0 0 164.04614118624164 786.3909277157057 950.4370689019474 0 0 0 0 0 0 0 0 0 H 0.64095 - 58 + NaN NaN 96913.3 NaN 4939 2200 7139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7142 39.5 NaN 137910 35 0 19642 0.261 -1 DHLMWVLL 8 41 521.7745551650063 1041.5345573968125 2 522.2771606445312 MULTI HCD FTMS 0 0 0 7139 29014.927734375 0.7966497755266267 -5 0.12765884399414062 3 Oxidation (M) _DHLM(Oxidation (M))WVLL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23 2.8892196856762586 0.5377058178582064 1 {I|L}A 2 -1 9.464 0 0 0.90865 0 0 149.10497259269363 705.2802218072874 854.385194399981 0 0 0 0 0 0 0 0 0 {I|L}A 0.90865 - 9 + NaN NaN 105205.8 NaN 4940 2200 7139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7144 39.504 NaN 222920 35 0 20888 0.327 + 3844 EPIKEATAL 9 57 486.2742068289386 970.5338607246772 2 486.2741394042969 MULTI HCD FTMS 0 0 0 7143 87337.5703125 0.5869039445360679 4 -0.11493682861328125 1 Unmodified _EPIKEATAL_ ENST00000487284.2_1_7:101917466-101926379:+|nuORF;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948|CUX1 10.073929032068715 0.27331982688540024 1 AT{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AT[{I|L}A] 8 4 27.268 0 0 2.8096 0 0 149.10527315988992 0 149.10527315988992 0 10.278193816289232 0 0 0 0 0 0.805462187404089 0.3807196863200844 AT{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AT[{I|L}A] 2.8096 - 205 + NaN NaN 118433.4 NaN 4941 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7145 39.509 NaN 173050 35 0 12421 0.261 + 9457 HPVSREWTL 9 45 562.7957015412279 1123.5768501492557 2 562.7955932617188 MULTI HCD FTMS 0 0 0 7143 64017.25390625 0.07764750110280526 36 -1.0125656127929688 2 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3739333478205 787.3739333478205 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 24 + NaN NaN 100636.2 NaN 4942 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7146 39.512 NaN 203500 35 0 20600 0.261 + 23164 RFKEANNFL 9 54 569.8038619029455 1137.593170872691 2 569.8038940429688 MULTI HCD FTMS 0 0 0 7143 99179.71875 0.7959201752816927 -3 0.054737091064453125 3 Unmodified _RFKEANNFL_ ENSG00000147604|ENST00000352983|RPL7 26.268140514670165 0.13340543277302316 1 [R{M(Oxidation (M))|F}]K{[CP]|[EA]}NN{M(Oxidation (M))|F}{I|L} 9 0 + 47.101 0 0 4.1404 4.1404 84.923 0 0 0 7.147642715192504 40.11107503885448 7.147642715192504 9.208187539523749 0 0.4247425010840047 0 0 1 + + [R{M(Oxidation (M))|F}]K{[CP]|[EA]}NN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}]K{[CP]|[EA]}GGN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}]K{[CP]|[EA]}NGG{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][QT]VNN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][QT]VGGN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][QT]VNGG{M(Oxidation (M))|F}{I|L} 4.1404;3.3309;3.3309;3.2613;2.4519;2.4519 +;-;-;-;-;- + 97 NaN NaN 123151.2 NaN 4943 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7147 39.516 NaN 151220 35 0 15792 0.261 + 20383 NYVEVTRKW 9 45 597.8152163227822 1193.6158797123644 2 597.8171997070312 MULTI HCD FTMS 0 0 0 7143 69311.09375 0.7106169869741071 -2 0.0289764404296875 4 Unmodified _NYVEVTRKW_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 45.739877483867886 0.03899552410870734 1 [YN]V[KG]K[DG]KW 10 5 + 63.76 0 0 5.3417 5.3417 82.903 0 0 0 10.546218740408904 53.30198135264581 10.546218740408904 1.9897000433601875 0 1.3252574989159953 2 0 0.6861818737241735 [YN]V[KG]K[DG]KW;[YN]V[KG]KQ[TA]W;[YN][RK]KQ[TA]{[DA]|[EG]};[YN][RK]K[DG]K{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{[WN]|[YH]}K[KG]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}K{[WN]|[YH]}[KG]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}{[WN]|[YH]}K[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[MT]KK{[TV]|[{I|L}S]}EV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}K{[WN]|[YH]}[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.3417;5.175;3.9562;3.2851;2.5996;2.0749;1.3145;0.9373;0.78981 -;-;-;-;-;-;-;-;- 124 NaN NaN 109812.1 NaN 4944 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7148 39.519 NaN 95466 35 0 26187 0.264 -1 0 24 416.22775484842754 415.22047838182755 1 416.228271484375 MULTI HCD FTMS 0 0 0 7143 39420.5 0.11676752159395123 76 -2.1141014099121094 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96898.4 NaN 4945 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7149 39.522 NaN 63389 35 0 10424 0.261 + 9722 HWLSVTREE 9 29 578.7911508688463 1155.5677488044926 2 578.7909545898438 MULTI HCD FTMS 0 0 0 7143 27596.3125 0.1224125084817892 34 -0.9628410339355469 6 Unmodified _HWLSVTREE_ REV__ENSG00000180815|ENST00000338883|MAP3K15;REV__MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant 3.2813086475875832 0.32614229037259 1 HPV 3 -1 23.188 0 0 2.0066 0 0 0 819.3601778619749 819.3601778619749 21.593793813122062 0 0 0 0 0 0 0 0 HPV 2.0066 - 9 + NaN NaN 94233.6 NaN 4946 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7150 39.526 NaN 56630 35 0 9707.4 0.263 -1 0 30 441.7879131732742 881.5612734133484 2 441.78765869140625 MULTI HCD FTMS 0 0 0 7143 22347.86328125 0.27105154612604554 14 -0.40306854248046875 7 NaN NaN 1 N 1 -1 5.4846 0 0 0.62214 0 0 183.16165782106538 581.3448537082921 764.5065115293576 0 0 0 0 0 0 0 0 0 N 0.62214 - 3 + NaN NaN 94950.4 NaN 4947 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7151 39.529 NaN 64728 35 0 5954.8 0.261 + 8629 HEERLYSTL 9 32 574.2907481779872 1146.5669434227743 2 574.2911376953125 MULTI HCD FTMS 0 0 0 7143 29528.708984375 0.006683889579121767 147 -4.128700256347656 8 Unmodified _HEERLYSTL_ REV__ENSG00000152133|ENST00000674370|GPATCH11;REV__nc|ENSG00000152133|Q8N954-2|GPATCH11;REV__nc|ENSG00000152133|Q8N954|GPATCH11 6.2057823575117 0.30397260197431997 1 V[{I|L}T] 3 -1 15.458 0 0 1.3482 0 0 815.3543145181466 0 815.3543145181466 0 -0.7403126772771866 -0.7403126772771866 0 0 0.5 0 0 0 V[{I|L}T] 1.3482 - 11 NaN NaN 97118.1 NaN 4948 2201 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7153 39.534 NaN 698460 35 0 275680 0.327 + 27777 TAVHDAIL 8 58 420.2346778369871 838.4548027407742 2 420.23480224609375 MULTI HCD FTMS 0 0 0 7152 745135.75 0.3550618183429639 -4 0.08425140380859375 1 Unmodified _TAVHDAIL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF 53.57557251787612 0.1056313556323 1 {NN|[MP]|[D{I|L}]|[EV]}A[HT]G{I|L}{I|L} 8 5 + 37.625 0 0 4.4874 4.4874 81.217 0 0 0 3.098943791441968 12.95880017344075 3.098943791441968 1.4612803567823818 0 1 0 0.6989700043360187 0 {NN|[MP]|[D{I|L}]|[EV]}A[HT]G{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A[HS]A{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A[HT]AV{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{I|L}T{[HG]|PP}{I|L};{NN|[MP]|[D{I|L}]|[EV]}P{[QN]|[E{I|L}]|[KN]}V[PG] 4.4874;4.3131;3.1152;2.3902;0.22005 -;-;-;-;- 105 NaN NaN 192152.1 NaN 4949 2202 7152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7154 39.538 NaN 88983 35 0 7752.1 0.261 + 8891 HPASDKIEAYM 11 34 631.2978273843278 1260.5811018354555 2 631.799072265625 MULTI HCD FTMS 0 0 0 7152 38391.921875 0.5324289065109609 2 -0.05246734619140625 2 Unmodified _HPASDKIEAYM_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 20.410884301107757 0.2792417076485638 1 HPA 3 8 31.198 0 0 2.4749 0 0 0 952.4084677260159 952.4084677260159 6.773174902439578 0 0 0 0 0.5 0 0 0 + HPA 2.4749 + + 13 + NaN NaN 93118 NaN 4950 2202 7152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7155 39.542 NaN 78679 35 0 9036.6 0.264 + 6654 FPNADSKAL 9 44 481.7509543119735 961.487355690747 2 481.7506103515625 MULTI HCD FTMS 0 0 0 7152 32181.22265625 0.3917341382821162 -8 0.19974517822265625 3 Unmodified _FPNADSKAL_ ENSG00000100030|ENST00000215832|MAPK1 27.223235318498237 0.1251536255799991 1 {M(Oxidation (M))|F}PNAD[KS][{I|L}A] 9 0 + 39.191 0 0 4.0761 4.0761 85.509 0 0 0 24.766668591815424 4.7223466744143465 4.7223466744143465 9.208187539523756 0 1.110924374808178 0 0 0 + + {M(Oxidation (M))|F}PNAD[KS][{I|L}A];{M(Oxidation (M))|F}PGGAD[KS][{I|L}A];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NGE[KS][{I|L}A] 4.0761;3.1184;1.3856 +;-;- + 56 + NaN NaN 96407.9 NaN 4951 2202 7152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7156 39.545 NaN 87701 35 0 5359 0.261 -1 MAILALFFHM 10 51 409.20842461244297 1224.6034444375289 3 409.5433349609375 MULTI HCD FTMS 0 0 0 7152 19293.34765625 0.6729033779998976 -1 0.029514312744140625 4 2 Oxidation (M) _M(Oxidation (M))AILALFFHM(Oxidation (M))_ ENSG00000140835|ENST00000539698|CHST4 4.189502756095605 0.45312800054222196 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3874 0 0 1059.557528765457 0 1059.557528765457 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3874 + + 16 + NaN NaN 96156.3 NaN 4952 2202 7152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7157 39.549 NaN 63958 35 0 7004 0.261 -1 MRARPEDRF 9 42 407.2040619599859 NaN 0 407.2039489746094 PEAK HCD FTMS 0 0 0 7152 25969.109375 1 0 0 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MRARPEDRF_ ENST00000314574.4_1_18:756816-812137:-|nuORF 1.0714618166137932 0.2900546878344058 1 V 1 -1 2.7642 0 0 0.34026 0 0 405.60613920141867 304.7009676568969 710.3071068583156 0 0 0 0 0 0 0 0 0 V 0.34026 - 6 + NaN NaN 95018.6 NaN 4953 2202 7152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7159 39.554 NaN 243940 35 0 60546 0.326 + 4744 EYSRSSVL 8 37 470.7404760111552 939.4663990891104 2 470.7403869628906 MULTI HCD FTMS 0 0 0 7158 182575.65625 0.3510006552701606 7 -0.21139144897460938 1 Unmodified _EYSRSSVL_ ENST00000461888.5_1_1:160195382-160195415:-|nuORF 15.847184025352803 0.47719562709667024 1 V{I|L} 2 6 25.969 0 0 2.7642 0 0 709.3039400315922 0 709.3039400315922 0 10.395906230238126 0 0 0 0.5 0 0 0 + V{I|L} 2.7642 + + 21 NaN NaN 118004.3 NaN 4954 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7160 39.558 NaN 316970 35 0 33066 0.261 + 87 ADKMDMSL 8 51 492.7042814229636 983.3940099127273 2 492.704345703125 MULTI HCD FTMS 0 0 0 7158 209453.75 0.9492740748252346 -3 0.061908721923828125 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 82.5293158979368 0.015232234617846252 1 {M(Oxidation (M))|F}S{I|L} 3 5 37.505 0 0 3.8138 0 0 618.2320423810562 0 618.2320423810562 0 15.298859261803983 0 0 0 0.75 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.8138 + + 74 NaN NaN 127184.3 NaN 4955 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7161 39.562 NaN 265640 35 0 34730 0.261 + 9053 HPESHVLVL 9 60 515.7877958579932 1029.5610387827862 2 515.78759765625 MULTI HCD FTMS 0 0 0 7158 47153.8125 0.4441005193581106 5 -0.15839004516601562 3 Unmodified _HPESHVLVL_ ENSG00000128274|ENST00000642412|A4GALT 26.88365393820708 0.12808753336095696 1 HVDC{I|L}V{I|L} 7 5 39.078 0 0 3.7956 0 0 232.14105422187657 0 232.14105422187657 0 11.630485568861602 0 0 0 0.3807196863200844 0 0.4247425010840047 0 HVDC{I|L}V{I|L} 3.7956 - 258 NaN NaN 126356.4 NaN 4956 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7162 39.565 NaN 98046 35 0 11059 0.261 -1 QADFLDKQM 9 46 556.2583217080297 1110.5020904828593 2 556.258056640625 MULTI HCD FTMS 0 0 0 7158 53247.25 0.5230437777866969 8 -0.23793411254882812 4 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 28.494509381512117 0.11816142465008336 1 [QA]D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 9 -1 [QA] + + 30.22 2.5084 1.2599 2.7213 2.7213 59.111 0 0 0 0 22.261131849867084 0 0 0 1.0994850021680094 0 0 0.2614393726401688 [QA]D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 2.7213 - 45 + NaN NaN 104683 NaN 4957 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7163 39.568 NaN 74555 35 0 8237.5 0.261 -1 VSFRKDEKAM 10 29 613.812459336817 1225.610365740434 2 613.81201171875 MULTI HCD FTMS 0 0 0 7158 44136.66015625 0.9279246562613153 1 -0.03289794921875 5 Oxidation (M) _VSFRKDEKAM(Oxidation (M))_ ENSG00000140157|ENST00000337451|NIPA2;nc|ENSG00000140157|Q8N8Q9-2|NIPA2 1.1933415558491238 0.46898715808974617 1 K{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 5.9421 0 0 0.48483 0 0 861.43168837715 0 861.43168837715 0 1.3380312008851565 0 0 0 0 0 0 0 K{[MS]|[{M(Oxidation (M))|F}A]} 0.48483 + + 3 NaN NaN 104133.7 NaN 4958 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7164 39.571 NaN 61099 35 0 17609 0.264 + 30789 VPSGPPDVL 9 30 440.74221330121486 879.4698736692297 2 440.7423400878906 MULTI HCD FTMS 0 0 0 7158 32167.12109375 0.6195137452545012 -1 0.01956939697265625 6 Unmodified _VPSGPPDVL_ ENSG00000145198|ENST00000691901|VWA5B2;ENST00000461141.5_1_3:183952309-183959823:+|nuORF 12.531546534597751 0.2520865569484384 1 V{I|L} 2 7 24.776 0 0 2.8172 0 0 649.3065663068375 0 649.3065663068375 0 17.78659694992122 0 0 0 0.3807196863200844 0 0 0 + V{I|L} 2.8172 + + 4 NaN NaN 85631.9 NaN 4959 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7165 39.575 NaN 85288 35 0 7098 0.261 -1 TALLVCEEL 9 40 524.2713935566128 NaN 0 524.2700805664062 PEAK HCD FTMS 0 0 0 7158 17941.931640625 0.6380367684835457 1 -0.03289794921875 7 Carbamidomethyl (C) _TALLVC(Carbamidomethyl (C))EEL_ ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000543530.1_1_11:73076398-73078822:+|nuORF 7.289230182591677 0.2599242500475609 1 {I|L}D 2 -1 13.711 0 0 1.3102 0 0 172.0875928450667 643.3070162408811 815.3946090859479 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}D 1.3102 - 30 + NaN NaN 94421.6 NaN 4960 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7166 39.578 NaN 98033 35 0 49021 0.261 + -1 HLMHMLPVAP 10 18 589.2981500462417 1176.5817471592834 2 589.2982177734375 MULTI HCD FTMS 0 0 0 7158 24698.380859375 0.5095317829922142 -5 0.10382080078125 8 2 Oxidation (M) _HLM(Oxidation (M))HM(Oxidation (M))LPVAP_ REV__ENSG00000249481|ENST00000674044|SPATS1;REV__nc|ENSG00000249481|Q496A3-2|SPATS1 1.844237919475145 0.46554186016084764 1 WV 2 -1 20.969 0 0 1.7822 0 0 0 888.4033907525999 888.4033907525999 20.969100130080562 0 0 0 0 0 0 0 0 WV 1.7822 - 1 + NaN NaN 102461.8 NaN 4961 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7167 39.581 NaN 37130 35 0 6833.9 0.262 -1 AACWAALMH 9 30 495.2201597441002 NaN 0 495.2076416015625 PEAK HCD FTMS 0 0 0 7158 4754.34326171875 0.5814002576412534 -5 0.10382080078125 9 Oxidation (M) _AACWAALM(Oxidation (M))H_ ENSG00000166224|ENST00000373202|SGPL1 2.302733041254933 0.2840881193086663 1 {I|L} 1 -1 4.6041 0 0 0.4658 0 0 512.236631888788 360.08384119205317 872.3204730808411 0 0 0 0 0 0 0 0 0 {I|L} 0.4658 + + 1 + NaN NaN 83475 NaN 4962 2203 7158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7169 39.587 NaN 158080 35 0 16604 0.327 -1 FSLTMMVIF 9 47 560.7768202702653 NaN 0 560.7659301757812 PEAK HCD FTMS 0 0 0 7168 4936.7978515625 0.3317703258407285 4 -0.12549209594726562 1 2 Oxidation (M) _FSLTM(Oxidation (M))M(Oxidation (M))VIF_ ENSG00000107951|ENST00000263063|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF;nc|ENSG00000107951|Q9NVV4-2|MTPAP 11.640296217721598 0.23883959125015683 1 SVH{M(Oxidation (M))|F}VT 6 -1 22.466 0 0 2.0068 0 0 147.0910869983739 299.1151522272094 446.2062392255833 0 0 0 0 0 0 0 0.5 0 SVH{M(Oxidation (M))|F}VT 2.0068 - 195 + NaN NaN 107530.4 NaN 4963 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7170 39.591 NaN 157440 35 0 20437 0.261 + 17853 MIANDVHTL 9 53 515.2553957305801 1028.49623852796 2 515.2552490234375 MULTI HCD FTMS 0 0 0 7168 61377.4296875 0.5153737797831252 5 -0.14867401123046875 2 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 60.07390631473393 0.0174780869009295 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVH[{I|L}T] 9 0 + 71.224 0 0 6.9251 6.9251 89.628 0 0 0 60.76660305958029 10.62900515715583 10.62900515715583 9.208187539523749 0 1.6989700043360187 2 0.9674165578762486 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVH[{I|L}T];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AGGDVH[{I|L}T];[QT]{I|L}CDVH[{I|L}T] 6.9251;6.0298;3.1258 +;-;- + 82 + NaN NaN 111515.2 NaN 4964 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7171 39.595 NaN 75862 35 0 6644.2 0.261 + 203 AETVRYSMCT 10 35 580.756873986535 1159.4991950398698 2 580.7570190429688 MULTI HCD FTMS 0 0 0 7168 28886.337890625 0.01762066087113464 44 -1.255279541015625 3 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 4.897010918128616 0.4493830473644964 1 S{[SA]|[TG]}E 4 9 19.693 0 0 1.6984 0 0 353.10576588396185 429.22605310611567 782.3318189900775 0 0 0 0 0 1.3494850021680094 0 0 0 S{[SA]|[TG]}E 1.6984 - 25 + NaN NaN 95115.3 NaN 4965 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7172 39.598 NaN 66399 35 0 5773.5 0.261 -1 AFDNMVTSM 9 35 524.2099613799671 1046.4053698267342 2 524.2100219726562 MULTI HCD FTMS 0 0 0 7168 30180.634765625 0.9456026298824184 1 -0.032955169677734375 4 2 Oxidation (M) _AFDNM(Oxidation (M))VTSM(Oxidation (M))_ ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF;nc|ENSG00000167515|Q9UL33|TRAPPC2L 21.536976647645854 0.1742816388551942 1 VTS{M(Oxidation (M))|F} 4 -1 43.175 0 0 4.1261 0 0 594.2111997601311 0 594.2111997601311 0 32.2062251842808 0 0 0 1.4247425010840047 0 0 0 VTS{M(Oxidation (M))|F} 4.1261 + + 29 + NaN NaN 97124.8 NaN 4966 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7173 39.601 NaN 126440 35 0 13822 0.262 + 11847 KEVFWIEDR 9 45 407.88023300975857 1220.6188696294757 3 408.2063293457031 MULTI HCD FTMS 0 0 0 7168 10104.92578125 0.3527466696920603 -9 0.22246551513671875 5 Unmodified _KEVFWIEDR_ REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 2.498486711656943 0.33207666356665205 1 DY 2 -1 10.969 0 0 0.89865 0 0 386.2275893384879 553.2789400690061 939.5065294074941 0 0 0 0 0 0 0 0 0 DY 0.89865 - 38 + NaN NaN 96570.1 NaN 4967 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7174 39.604 NaN 94564 35 0 8234.4 0.261 + 3238 EDQRTVQLL 9 33 551.2971725531999 NaN 0 551.2844848632812 PEAK HCD FTMS 0 0 0 7168 8978.212890625 1 0 0 6 Unmodified _EDQRTVQLL_ REV__ENSG00000105357|ENST00000642316|MYH14;REV__nc|ENSG00000105357|Q7Z406-4|MYH14;REV__nc|ENSG00000105357|Q7Z406-5|MYH14;REV__nc|ENSG00000105357|Q7Z406-6|MYH14;REV__nc|ENSG00000105357|Q7Z406|MYH14 3.5964929083625545 0.27781873954207675 1 TT 2 -1 11.938 0 0 1.0847 0 0 131.12021072964336 764.3410738580686 895.461284587712 0 0 0 0 0 0 0 0.8494850021680094 0 TT 1.0847 - 6 + NaN NaN 89793.2 NaN 4968 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7175 39.608 NaN 30946 35 0 5338 0.261 + 11627 IYTWPDTSF 9 16 565.2632262529404 1128.5118995726807 2 565.2630615234375 MULTI HCD FTMS 0 0 0 7168 17458.421875 0.39121373650435437 3 -0.08908462524414062 7 Unmodified _IYTWPDTSF_ OR4E2|p.R260W|1|0.49|ENSG00000221977|chr14:21665860-21665860|C/T|missense_variant 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86773 NaN 4969 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7176 39.611 NaN 56215 35 0 5019.2 0.261 + 21307 PSFQQKQE 8 30 496.24601267828496 NaN 0 496.2568664550781 PEAK HCD FTMS 0 0 0 7168 3756.353271484375 0.279542833143665 -3 0.08198165893554688 8 Unmodified _PSFQQKQE_ REV__ENSG00000163840|ENST00000296161|DTX3L 14.838274106304384 0.38780017429789254 1 S 1 -1 9.732 0 0 0.98255 0 0 97.04883580403244 803.3710334922365 900.419869296269 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.98255 + + 7 + NaN NaN 88101.5 NaN 4970 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7177 39.614 NaN 33633 35 0 6261.7 0.261 + 13038 KYKEDEPLF 9 17 584.7979774884353 1167.5814020436706 2 585.299560546875 MULTI HCD FTMS 0 0 0 7168 9850.775390625 0.5200124920197893 -2 0.05246734619140625 9 Unmodified _KYKEDEPLF_ ENSG00000155096|ENST00000337198|AZIN1 8.155526934196011 0.2891920862272901 1 E[{I|L}P]{M(Oxidation (M))|F} 4 5 21.198 0 0 1.8155 0 0 663.3249929620716 0 663.3249929620716 0 21.197887582883936 0 0 0 0.5 0 0 0 + E[{I|L}P]{M(Oxidation (M))|F} 1.8155 + + 3 NaN NaN 88705.3 NaN 4971 2204 7168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7179 39.62 NaN 2979600 35 0 356320 0.327 + 11889 KFIDTTSKF 9 104 543.79515636783 1085.57575980246 2 543.795654296875 MULTI HCD FTMS 0 0 0 7178 2789848.25 0.32716550784360404 5 -0.145538330078125 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 174.48199792848246 1.3875613735084105E-09 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 110.68 0 0 10.195 10.195 90.233 0 0 0 2.5428484529252984 2.5428484529252984 2.5428484529252984 2.5428484529252984 0 3.0356668758921828 0 1.736346736360778 1.4361818737241734 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}TTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[MG]|[TS]}ESK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S{[QN]|[E{I|L}]|[KN]}TSK{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}TSK{M(Oxidation (M))|F};P[VP]{M(Oxidation (M))|F}AAD{I|L}KE 10.195;9.9609;9.8721;8.9099;6.5262;6.3957;6.3847;5.9727;5.8186;5.8068 +;+;-;-;-;-;-;-;-;- + 3822 NaN NaN 473894.5 NaN 4972 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7180 39.624 NaN 1300000 35 0 178380 0.261 + 11617 IYTSSVNRL 9 75 526.7904706682206 1051.566388403241 2 526.7906494140625 MULTI HCD FTMS 0 0 0 7178 762165.125 0.1745181383406898 8 -0.23168563842773438 2 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 128.93241758739586 0.0006697181619526092 1 {I|L}YTSSVNR{I|L} 9 0 + 104.62 0 0 9.9494 9.9494 93.764 0 0 0 86.3222020048134 8.384767769392738 8.384767769392738 9.208187539523749 0 2.7302046884880937 1.6989700043360187 1.4749073637206092 0 + + {I|L}YTSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVNR{I|L};{I|L}YTSSV{I|L}[RN];[Y{I|L}]TSSVGGR{I|L};{I|L}YTSSAAAR{I|L};{I|L}YTS[QT]AR{I|L};[YT]{I|L}SSVNR{I|L};[YT]{I|L}SSVGGR{I|L};{[MG]|[TS]}[Y{I|L}]SVNR{I|L} 9.9494;9.0737;8.9858;8.9012;8.1101;7.9377;6.9545;6.23;5.3543;5.2303 +;-;+;-;-;-;-;-;-;- + 911 + NaN NaN 296408.3 NaN 4973 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7181 39.628 NaN 1400100 35 0 264650 0.261 + 2306 DMHTEVTTL 9 64 531.7423516043784 1061.4701502755568 2 531.7423706054688 MULTI HCD FTMS 0 0 0 7178 755932.25 0.8123778905942711 2 -0.05612945556640625 3 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 81.89019881105858 0.005240739447516426 1 EVTT{I|L} 5 4 62.691 0 0 5.906 0 0 500.1718006818375 0 500.1718006818375 0 31.80015006187311 0 0 0 1.5 0 1.274227503252014 0 + EVTT{I|L} 5.906 + + 229 NaN NaN 303483.7 NaN 4974 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7182 39.631 NaN 220790 35 0 55519 0.261 + 19185 NIEGPDAKL 9 38 478.7560490870676 955.4975452409352 2 478.75592041015625 MULTI HCD FTMS 0 0 0 7178 143442.09375 0.03531578408962702 16 -0.4668998718261719 4 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 57.107585691075435 0.021627766313179933 1 N{I|L}EG[DP]AK{I|L} 9 0 + 80.384 0 0 8.4128 8.4128 89.35 0 0 0 4.515449934959719 4.515449934959719 4.515449934959719 4.515449934959719 0 2.504432191740108 2 0.4247425010840047 0 + + N{I|L}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L} 8.4128;7.9402;6.7835;5.8198 +;+;-;- + 72 + NaN NaN 123123.2 NaN 4975 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7183 39.634 NaN 143790 35 0 17550 0.261 + 25000 RYVPRASYF 9 50 579.8061189514871 1157.597684969774 2 579.8059692382812 MULTI HCD FTMS 0 0 0 7178 94490.3125 1 0 0 5 Unmodified _RYVPRASYF_ ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 12.240655878213236 0.2545997876781172 1 RYV 3 6 26.427 0 0 2.2829 0 0 0 736.3432160982398 736.3432160982398 5.981362441963327 0 0 0 0 0.5 0 0 0 + RYV 2.2829 + + 25 + NaN NaN 112563.6 NaN 4976 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7184 39.637 NaN 87550 35 0 17503 0.261 -1 VFMCVCVCMSD 11 36 626.7304846595999 1251.4464163859998 2 626.730712890625 MULTI HCD FTMS 0 0 0 7178 36843.87890625 0.6412099981909947 -2 0.06585311889648438 6 Oxidation (M) _VFM(Oxidation (M))CVCVCMSD_ ENST00000464356.6_2_1:156435368-156435647:-|nuORF 6.2057823575117 0.391704213221645 1 VSTD{NN|[MP]|[D{I|L}]|[EV]} 6 -1 36.643 0 0 2.9281 0 0 603.1360951154312 0 603.1360951154312 0 15.674100046527357 0 0 0 0.8494850021680094 0 0.4247425010840047 0 VSTD{NN|[MP]|[D{I|L}]|[EV]} 2.9281 - 19 NaN NaN 114444.9 NaN 4977 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7185 39.641 NaN 44689 35 0 10829 0.264 + 21948 QEGLDMQM 8 17 476.1981833591701 NaN 0 476.1983947753906 PEAK HCD FTMS 0 0 0 7178 15079.654296875 0.5050132856697979 -76 2.0825157165527344 7 Unmodified _QEGLDMQM_ ENSG00000139144|ENST00000538779|PIK3C2G;nc|ENSG00000139144|O75747-2|PIK3C2G;PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant 1.844237919475145 0.38822285293237185 1 D 1 7 3.0989 0 0 0.32607 0 0 408.14726896267774 424.18244348697505 832.3297124496528 0 0 0 0 0 0 0 0 0 + D 0.32607 + + 1 + NaN NaN 105575.4 NaN 4978 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7186 39.644 NaN 115330 35 0 24297 0.261 + 32685 WPIIDGHR 8 43 497.2668234723664 NaN 0 497.2666015625 PEAK HCD FTMS 0 0 0 7178 9741.7763671875 0.48961430056067523 -1 0.032955169677734375 8 Unmodified _WPIIDGHR_ REV__ENSG00000181027|ENST00000318584|FKRP 2.577480529830294 0.38822285293237185 1 E 1 -1 6.9897 0 0 0.70424 0 0 311.1775545601641 549.2791231744749 860.456677734639 0 0 0 0 0 0 0 0 0 E 0.70424 - 4 + NaN NaN 118010.4 NaN 4979 2205 7178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7188 39.649 NaN 123880 35 0 10641 0.327 + 9458 HPVSREWTL 9 27 562.7957015412279 1123.5768501492557 2 562.7955932617188 MULTI HCD FTMS 0 0 0 7187 48841.328125 0.059240389864304355 41 -1.1562118530273438 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.374042344902 787.374042344902 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 16 + NaN NaN 111218.3 NaN 4980 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7189 39.654 NaN 131290 35 0 43836 0.263 + 31026 VSQIKSPF 8 41 453.2591454727701 NaN 0 453.26837158203125 PEAK HCD FTMS 0 0 0 7187 3357.4033203125 0.5403678042116229 1 -0.02640533447265625 2 Unmodified _VSQIKSPF_ ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1 5.760428011301431 0.38822285293237185 1 A 1 8 6.9897 0 0 0.77277 0 0 186.08123808296654 644.3634127252561 830.4446508082226 0 0 0 0 0 0 0 0 0 A 0.77277 - 2 + NaN NaN 115551.4 NaN 4981 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7190 39.657 NaN 134780 35 0 17104 0.261 -1 EAMADLHTL 9 40 508.73926800261023 NaN 0 508.73956298828125 PEAK HCD FTMS 0 0 0 7187 33009.89453125 0.7402920543902507 -2 0.06267929077148438 3 Oxidation (M) _EAM(Oxidation (M))ADLHTL_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 13.90604991867851 0.22786006501039813 1 TH{I|L}DA 5 -1 23.984 0 0 2.3619 0 0 149.10077614018297 326.0812166803344 475.1819928205174 0 0 0 0 0 0 0 0.3807196863200844 0 TH{I|L}DA 2.3619 - 46 + NaN NaN 105671.9 NaN 4982 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7191 39.661 NaN 119830 35 0 21042 0.261 + -1 MDDLSCPQL 9 40 547.7278580596535 1093.441163186107 2 547.7278442382812 MULTI HCD FTMS 0 0 0 7187 25057.7734375 0.8366640674669384 1 -0.02640533447265625 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DDLSC(Carbamidomethyl (C))PQL_ REV__ENSG00000185305|ENST00000504924|ARL15 6.723162845929126 0.3000504726104499 1 [DV]{I|L} 3 -1 27.447 0 0 2.5102 0 0 0 763.2395390008131 763.2395390008131 20.457574905606748 0 0 0 0 0 1.6989700043360187 0 0 [DV]{I|L} 2.5102 - 13 NaN NaN 109027.2 NaN 4983 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7192 39.664 NaN 49083 35 0 5534.2 0.261 + 8191 GQLEDCVVL 9 34 488.24241377419327 NaN 0 488.24188232421875 PEAK HCD FTMS 0 0 0 7187 26196.984375 0.8557895264733577 -1 0.02972412109375 5 Unmodified _GQLEDCVVL_ ENSG00000054219|ENST00000263636|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;nc|ENSG00000054219|O60449-2|LY75;nc|ENSG00000054219|O60449-3|LY75 6.723162845929126 0.26266733336404485 1 V 1 8 6.9897 0 0 0.71728 0 0 131.09890274307003 741.2814425104124 872.3803452534823 0 0 0 0 0 0 0 0 0 + V 0.71728 + + 2 + NaN NaN 104430.8 NaN 4984 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7193 39.667 NaN 44976 35 0 4716.7 0.261 -1 TATKIEITM 9 25 512.2731414816805 1022.5317300301609 2 512.2734375 MULTI HCD FTMS 0 0 0 7187 20763.357421875 0.11115057127093857 35 -0.9906387329101562 6 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 29.84058131909904 0.11198220037953927 1 {I|L}T{M(Oxidation (M))|F} 3 -1 36.242 0 0 3.5444 0 0 643.3575076284292 0 643.3575076284292 0 27.0217596488785 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {I|L}T{M(Oxidation (M))|F} 3.5444 + + 18 NaN NaN 97103.4 NaN 4985 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7194 39.671 NaN 44314 35 0 4583 0.261 + 21933 QEDAARLQAAY 11 28 618.3045485488823 1234.5945441645645 2 618.3047485351562 MULTI HCD FTMS 0 0 0 7187 23493.732421875 0.982072156819458 -2 0.06267929077148438 7 Unmodified _QEDAARLQAAY_ ENSG00000115306|ENST00000356805|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 22.65808497894818 0.2596617744649775 1 QAAY 4 7 21.995 0 0 1.7815 0 0 783.3873158185562 0 783.3873158185562 0 2.7865969499212184 0 0 0 0 0 0 0.8807196863200843 + QAAY 1.7815 + + 14 NaN NaN 94589 NaN 4986 2206 7187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7196 39.676 NaN 1802500 35 0 689830 0.327 + 27778 TAVHDAIL 8 92 420.2346778369871 838.4548027407742 2 420.2348937988281 MULTI HCD FTMS 0 0 0 7195 2044410.375 0.9741742564180027 1 -0.036407470703125 1 Unmodified _TAVHDAIL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF 89.42679046578446 0.023235607516423472 1 [TA]VHDA{I|L}{I|L} 8 0 + 69.478 0 0 8.2864 8.2864 93.798 0 0 0 13.186814654273675 16.409780573583312 13.186814654273675 13.186814654273675 0 2.1791746928241125 1.5228787452803376 0.9604093769761876 0 + + [TA]VHDA{I|L}{I|L};[{I|L}A]D[HS]A{I|L}{I|L};[{I|L}A]SHDA{I|L}{I|L};{[DA]|[EG]}{I|L}[HS]A{I|L}{I|L};[{I|L}T]GHDA{I|L}{I|L};{[SA]|[TG]}{I|L}HDA{I|L}{I|L};[TA]VH{I|L}{[DA]|[EG]}{I|L};[TA]VHDVVV;[{I|L}A]D[HV]AT{I|L};{[DA]|[EG]}{I|L}[HV]AT{I|L} 8.2864;6.7137;6.5598;6.4476;5.5415;5.0465;3.9235;3.5492;3.4155;3.1494 +;-;-;-;-;-;-;-;-;- + 450 NaN NaN 354177.7 NaN 4987 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7197 39.68 NaN 100740 35 0 12949 0.261 + 22441 QQGVRQYFL 9 43 569.8038619029455 1137.593170872691 2 569.8038330078125 MULTI HCD FTMS 0 0 0 7195 56955.47265625 0.45706935199202864 3 -0.08940887451171875 2 Unmodified _QQGVRQYFL_ REV__ENSG00000173548|ENST00000308527|SNX33 23.1484247019978 0.1603590852062899 1 [R{M(Oxidation (M))|F}]K{[CP]|[EA]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L} 9 -1 + 31.857 0 0 2.8004 2.8004 87.846 0 0 0 7.147642715192507 26.372724716820247 7.147642715192507 31.85727478186053 0 0.4247425010840047 0 0 0.9247425010840047 [R{M(Oxidation (M))|F}]K{[CP]|[EA]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L} 2.8004 - 25 NaN NaN 96699.7 NaN 4988 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7198 39.684 NaN 75010 35 0 11581 0.261 + 20384 NYVEVTRKW 9 34 597.8152163227822 1193.6158797123644 2 597.8163452148438 MULTI HCD FTMS 0 0 0 7195 49808.61328125 0.5106663995658036 4 -0.1159515380859375 3 Unmodified _NYVEVTRKW_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 12.240655878213236 0.2545997876781172 1 [YN]VQK 5 5 54.521 0 0 4.5677 0 0 0 558.2695406549436 558.2695406549436 50.541134294324124 0 0 0 0 1.2302046884880937 2 0 0 [YN]VQK 4.5677 - 67 + NaN NaN 96331.1 NaN 4989 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7199 39.687 NaN 128590 35 0 14713 0.262 -1 EAMADLHTL 9 32 508.73926800261023 NaN 0 508.7392883300781 PEAK HCD FTMS 0 0 0 7195 31714.69140625 0.7112453520037522 -1 0.02640533447265625 4 Oxidation (M) _EAM(Oxidation (M))ADLHTL_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 6.723162845929126 0.26266733336404485 1 AD{I|L} 3 -1 10.177 0 0 1.0022 0 0 347.1139561065498 366.17771326236567 713.2916693689154 0 0 0 0 0 0 0 0 0 AD{I|L} 1.0022 + + 22 + NaN NaN 115443 NaN 4990 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7200 39.69 NaN 47657 35 0 5080.8 0.261 -1 EHFCNECFD 9 25 629.2188663335189 1256.4231797338377 2 629.2188720703125 MULTI HCD FTMS 0 0 0 7195 29596.005859375 0.644291886537758 -1 0.02640533447265625 5 2 Carbamidomethyl (C) _EHFC(Carbamidomethyl (C))NEC(Carbamidomethyl (C))FD_ ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B 0.6014990680409731 0.3464572424761564 1 DT{[{M(Oxidation (M))|F}H]|[RQ]} 4 -1 14.693 0 0 1.1694 0 0 738.209814110594 0 738.209814110594 0 3.7236374744834677 0 0 0 0 0 0 0 DT{[{M(Oxidation (M))|F}H]|[RQ]} 1.1694 - 13 + NaN NaN 87497.2 NaN 4991 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7201 39.694 NaN 100610 35 0 26673 0.264 + 26317 SSAAIFVH 8 37 416.2213874264628 NaN 0 416.22821044921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SSAAIFVH_ ENSG00000119927|ENST00000348367|GPAM;ENST00000369425.5_1_10:113915595-113915829:-|nuORF 0.7936320650641473 0.38822285293237185 1 Y 1 8 2.2185 0 0 0.26715 0 0 485.45937898849195 178.88010584049064 664.3394848289826 0 0 0 0 0 0 0 0 0 Y 0.26715 - 1 + NaN NaN 92966.8 NaN 4992 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7202 39.697 NaN 79856 35 0 12524 0.261 + 20827 PHSPPQAEALT 11 25 574.2907481779872 1146.5669434227743 2 574.2910766601562 MULTI HCD FTMS 0 0 0 7195 20979.099609375 0.004748666300739968 153 -4.28729248046875 7 Unmodified _PHSPPQAEALT_ REV__ENSG00000104880|ENST00000668164|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 10.150570793230772 0.3686401556411756 1 {I|L}T 2 -1 25.217 0 0 2.1993 0 0 914.4248813250128 0 914.4248813250128 0 13.979400086720375 0 0 0 0.4247425010840047 0 0 0 {I|L}T 2.1993 + + 6 NaN NaN 107332.5 NaN 4993 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7203 39.7 NaN 21535 35 0 5899.2 0.261 -1 PHLWGHVCQQ 10 22 631.2978273843278 1260.5811018354555 2 631.2982177734375 MULTI HCD FTMS 0 0 0 7195 15105.650390625 0.15100165963159162 7 -0.20878219604492188 8 Carbamidomethyl (C) _PHLWGHVC(Carbamidomethyl (C))QQ_ ENST00000350777.6_1_11:119002615-119003380:+|nuORF 3.944395688203298 0.4544253912184634 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 91383.9 NaN 4994 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7204 39.704 NaN 22469 35 0 3711.2 0.261 -1 AQCQVIFGSKA 11 19 604.8078349630075 1207.601116992815 2 604.8062744140625 MULTI HCD FTMS 0 0 0 7195 3512.366455078125 0.14687227702419114 3 -0.08940887451171875 9 Carbamidomethyl (C) _AQC(Carbamidomethyl (C))QVIFGSKA_ ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9 1.1933415558491238 0.4136870758253112 1 G 1 -1 6.4659 0 0 0.53543 0 0 603.8328807641025 543.7323702447874 1147.5652510088898 0 0 0 0 0 0.4247425010840047 0 0 0 G 0.53543 + + 1 + NaN NaN 86352.1 NaN 4995 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7205 39.707 NaN 8927.9 35 0 4122.8 0.261 + 32430 WAWFIFWW 8 8 621.3025512695312 NaN 0 621.3025512695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _WAWFIFWW_ ENSG00000213088|ENST00000368122|ACKR1;nc|ENSG00000213088|Q16570-2|ACKR1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89237.7 NaN 4996 2207 7195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7207 39.712 NaN 293900 35 0 32105 0.327 + 88 ADKMDMSL 8 50 492.7042814229636 983.3940099127273 2 492.7043151855469 MULTI HCD FTMS 0 0 0 7206 172929.328125 0.7837402193372465 2 -0.05300140380859375 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 82.5293158979368 0.015232234617846252 1 {M(Oxidation (M))|F}S{I|L} 3 5 39.253 0 0 3.9915 0 0 618.2315540998062 0 618.2315540998062 0 14.91853403099583 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.9915 + + 46 NaN NaN 147928.2 NaN 4997 2208 7206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7208 39.717 NaN 76434 35 0 15172 0.261 + 34977 YSSERSVL 8 22 470.7404760111552 939.4663990891104 2 470.7403259277344 MULTI HCD FTMS 0 0 0 7206 41775.44140625 0.08031304725376798 12 -0.347900390625 2 Unmodified _YSSERSVL_ ENSG00000138623|ENST00000261918|SEMA7A;ENST00000569617.1_1_15:74703630-74703961:-|nuORF;nc|ENSG00000138623|O75326-2|SEMA7A 7.910154910731844 0.5302565402355366 1 V{I|L} 2 6 20.969 0 0 2.232 0 0 709.3019886701187 0 709.3019886701187 0 13.979400086720375 0 0 0 0 0 0 0 + V{I|L} 2.232 + + 7 NaN NaN 92941.5 NaN 4998 2208 7206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7209 39.72 NaN 109440 35 0 14988 0.261 + 6655 FPNADSKAL 9 39 481.7509543119735 961.487355690747 2 481.7507629394531 MULTI HCD FTMS 0 0 0 7206 77851.0859375 0.9476621938766098 -2 0.06281280517578125 3 Unmodified _FPNADSKAL_ ENSG00000100030|ENST00000215832|MAPK1 37.07464296494664 0.07877380486334713 1 {M(Oxidation (M))|F}PNAD[KS]A{I|L} 9 0 + 47.202 0 0 4.9092 4.9092 86.091 0 0 0 24.99545604461879 8.969771685254386 8.969771685254386 9.208187539523749 0 1.610924374808178 0 0 0 + + {M(Oxidation (M))|F}PNAD[KS]A{I|L};{M(Oxidation (M))|F}PGGAD[KS]A{I|L} 4.9092;3.9515 +;- + 49 + NaN NaN 109377.7 NaN 4999 2208 7206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7210 39.723 NaN 53651 35 0 5590.7 0.261 -1 QADFLDKQM 9 32 556.2583217080297 1110.5020904828593 2 556.2581176757812 MULTI HCD FTMS 0 0 0 7206 24531.177734375 0.2409679349777576 13 -0.3743629455566406 4 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 19.361941925380144 0.1930734562688509 1 [QA]D{M(Oxidation (M))|F}{I|L}D 6 -1 26.911 0 0 2.4233 0 0 0 418.17685877017817 418.17685877017817 8.952424927286842 0 0 0 0 0 0 0 0 [QA]D{M(Oxidation (M))|F}{I|L}D 2.4233 + + 14 + NaN NaN 95260.9 NaN 5000 2208 7206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7211 39.727 NaN 166160 35 0 14681 0.264 + 3527 EIKGFYDPPR 10 46 407.88023300975857 1220.6188696294757 3 407.88043212890625 MULTI HCD FTMS 0 0 0 7206 25356.654296875 0.6009398422632126 -2 0.06281280517578125 5 Unmodified _EIKGFYDPPR_ ENSG00000096746|ENST00000265866|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;ENST00000490442.5_1_10:70098233-70101119:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;nc|ENSG00000096746|P31942-3|HNRNPH3 1.4551175022131473 0.4676015363898197 1 {[QN]|[E{I|L}]|[KN]}WKYD 6 6 14.614 0 0 1.1973 0 0 0 383.2044269666996 383.2044269666996 7.6245626185712485 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}WKYD 1.1973 - 42 NaN NaN 110861.5 NaN 5001 2208 7206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7212 39.73 NaN 38151 35 0 4293.4 0.261 + 9955 IEDTHQKPKM 10 18 613.812459336817 1225.610365740434 2 613.8156127929688 MULTI HCD FTMS 0 0 0 7206 11665.673828125 0.24525794064838524 6 -0.17237472534179688 6 Unmodified _IEDTHQKPKM_ ENST00000476189.1_1_6:159209469-159239197:-|nuORF 0.6268255596534771 0.47198581731947004 1 A 1 10 6.9897 0 0 0.5703 0 0 651.3020904492215 500.2552584283813 1151.5573488776029 0 0 0 0 0 0 0 0 0 A 0.5703 - 1 + NaN NaN 86881.4 NaN 5002 2208 7206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7214 39.735 NaN 309760 35 0 78346 0.327 + 28243 TLIYDALER 9 48 547.2979218177405 1092.581290702281 2 547.285400390625 MULTI HCD FTMS 0 0 0 7213 8327.09375 0.5121320291888946 -5 0.14867401123046875 1 Unmodified _TLIYDALER_ ENSG00000184156|ENST00000388996|KCNQ3;ENST00000519589.1_1_8:133153289-133492518:-|nuORF 6.2057823575117 0.30397260197431997 1 [DV]{I|L} 3 7 27.447 0 0 2.5121 0 0 0 762.3796334916154 762.3796334916154 7.754537344402905 0 0 0 0 0 2 0 0 [DV]{I|L} 2.5121 - 13 NaN NaN 132137 NaN 5003 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7215 39.74 NaN 162320 35 0 16207 0.261 + 21779 QAIENAHVL 9 37 497.7692346348504 993.5239163365009 2 497.7693786621094 MULTI HCD FTMS 0 0 0 7213 50134.05859375 0.6897385110122717 -1 0.023181915283203125 2 Unmodified _QAIENAHVL_ ENSG00000136381|ENST00000258886|IREB2 30.636539890814138 0.10832830463492794 1 [QA]{I|L}EANHV{I|L} 9 2 + 34.587 0 0 3.4813 3.4813 80.77 0 0 0 3.4678748622465676 9.137342758552698 3.4678748622465676 3.010299956639816 0 0.3494850021680094 0 0 0 [QA]{I|L}EANHV{I|L};[QA]{I|L}ENAHV{I|L};[QA]{I|L}EAGGHV{I|L};[QA]{I|L}EGGAHV{I|L};[QA]{I|L}[HA]{[QD]|[EN]|[WG]|[KD]|[RS]}V{I|L} 3.4813;3.1783;2.5545;2.2515;0.009699 -;+;-;-;- + 138 + NaN NaN 101319.8 NaN 5004 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7216 39.743 NaN 153570 35 0 20645 0.261 + -1 SRSNAAASVLC 11 44 560.7768202702653 NaN 0 560.7656860351562 PEAK HCD FTMS 0 0 0 7213 4457.70654296875 0.2995736906251905 7 -0.20887374877929688 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SRSNAAASVLC_ REV__chr1:153615939-153616295|498|35.41|0.0|21.76|-|1|None,S100A14|1 10.799506525563784 0.3114850535502259 1 HTMV 4 -1 17.964 0 0 1.6046 0 0 165.10186592641952 483.20014368228755 648.3020096087071 0 0 0 0 0 0 0 0.3807196863200844 0 HTMV 1.6046 - 144 + NaN NaN 105735.8 NaN 5005 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7217 39.747 NaN 143320 35 0 73197 0.261 + 31027 VSQKPDPMYL 10 24 589.2981500462417 1176.5817471592834 2 589.29833984375 MULTI HCD FTMS 0 0 0 7213 47082.453125 0.9713189874680584 1 -0.029819488525390625 4 Unmodified _VSQKPDPMYL_ REV__nc|ENSG00000158458|O14511-5|NRG2;REV__nc|ENSG00000158458|O14511-6|NRG2 3.5964929083625545 0.45626689593999237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 113084.9 NaN 5006 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7218 39.75 NaN 87427 35 0 12121 0.261 -1 MIANDVHTL 9 42 515.2553957305801 1028.49623852796 2 515.2554931640625 MULTI HCD FTMS 0 0 0 7213 32039.431640625 0.26902858381009753 10 -0.291595458984375 5 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 21.536976647645854 0.1742816388551942 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A 3 -1 38.2 0 0 3.7141 0 0 0 694.3175753229124 694.3175753229124 36.60605612500483 0 0 0 0 0.9247425010840047 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A 3.7141 + + 23 + NaN NaN 110383.5 NaN 5007 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7219 39.753 NaN 58527 35 0 15439 0.261 + -1 KLYRFMKMGS 10 18 646.8274953968302 1291.6404378604602 2 646.8274536132812 MULTI HCD FTMS 0 0 0 7213 30366.939453125 1 0 0 6 2 Oxidation (M) _KLYRFM(Oxidation (M))KM(Oxidation (M))GS_ REV__ENST00000483608.1_1_2:148705603-148705648:-|nuORF 0.4007161486938917 0.47318265037741464 1 V 1 -1 5.4846 0 0 0.42462 0 0 710.3212983114353 479.2268465631469 1189.5481448745822 0 0 0 0 0 0 0 0 0 V 0.42462 - 1 + NaN NaN 97683 NaN 5008 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7220 39.757 NaN 98016 35 0 36376 0.264 + -1 RPCEEWYCI 9 28 438.18743187892284 1311.5404662369685 3 438.1878967285156 MULTI HCD FTMS 0 0 0 7213 32538.318359375 1 0 0 7 2 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))EEWYC(Carbamidomethyl (C))I_ REV__ZIC3|p.V296I|1|0.23|ENSG00000156925|chrX:137567577-137567577|G/A|missense_variant 0.8643753074506083 0.3444644448335434 1 C(Carbamidomethyl (C))K{I|L} 3 -1 10.19 0 0 0.77691 0 0 892.3153208285686 0 892.3153208285686 0 10.189549981487078 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C))K{I|L} 0.77691 - 5 + NaN NaN 98354.6 NaN 5009 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7221 39.76 NaN 204010 35 0 36040 0.261 + 34963 YSPQRGQQL 9 45 538.7778915041357 1075.5412300750713 2 538.7775268554688 MULTI HCD FTMS 0 0 0 7213 20924.326171875 0.24497389019613725 -4 0.11571884155273438 8 Unmodified _YSPQRGQQL_ ENSG00000179912|ENST00000402412|R3HDM2;ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5|R3HDM2 36.12702656103203 0.08312389501731911 1 QQ{I|L} 3 6 39.182 0 0 3.643 0 0 688.3290882794937 0 688.3290882794937 0 28.213337517843655 0 0 0 0.5994850021680094 0 0 0.8494850021680094 + QQ{I|L} 3.643 + + 40 NaN NaN 111812.3 NaN 5010 2209 7213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7223 39.765 NaN 1158900 35 0 145500 0.327 + 11890 KFIDTTSKF 9 91 543.79515636783 1085.57575980246 2 543.7952880859375 MULTI HCD FTMS 0 0 0 7222 1007841.75 0.11818960331076668 10 -0.29489898681640625 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 187.1423235319798 5.87619274747922E-13 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 110.61 0 0 10.189 10.189 89.772 0 0 0 1.5308998699194376 1.5308998699194376 1.5308998699194376 1.5308998699194376 0 3.0356668758921828 0 1.736346736360778 1.7302046884880937 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDTTS{M(Oxidation (M))|F}K;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DKTTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}TTSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DKTTS{M(Oxidation (M))|F}K 10.189;10.048;9.9434;9.2228;9.1512;8.1853;7.2395;6.8258;6.4827;6.202 +;+;-;-;-;-;-;-;-;- + 2934 NaN NaN 257367.9 NaN 5011 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7224 39.77 NaN 614240 35 0 82395 0.261 + 11618 IYTSSVNRL 9 59 526.7904706682206 1051.566388403241 2 526.7906494140625 MULTI HCD FTMS 0 0 0 7222 332319.40625 0.07609343724987862 13 -0.3743553161621094 2 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 86.33184430468982 0.004622086694044132 1 {I|L}YTSSVNR{I|L} 9 0 + 94.575 0 0 8.9937 8.9937 92.964 0 0 0 79.35850004969453 7.900217704352457 7.900217704352457 9.208187539523749 0 2.110924374808178 1.6989700043360187 1.1861818737241734 0 + + {I|L}YTSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVNR{I|L} 8.9937;8.1181;6.5203 +;-;+ + 237 + NaN NaN 190968.6 NaN 5012 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7225 39.773 NaN 24863 35 0 5738.5 0.261 + 13039 KYKEDEPLF 9 16 584.7979774884353 1167.5814020436706 2 584.7977294921875 MULTI HCD FTMS 0 0 0 7222 19950.013671875 0.4788655885259863 3 -0.08614730834960938 3 Unmodified _KYKEDEPLF_ ENSG00000155096|ENST00000337198|AZIN1 12.240655878213236 0.2545997876781172 1 EP{I|L}{M(Oxidation (M))|F} 4 5 24.38 0 0 2.0881 0 0 663.3210316388687 0 663.3210316388687 0 24.38039076304328 0 0 0 0.8182503180159344 0 0 0 + EP{I|L}{M(Oxidation (M))|F} 2.0881 + + 11 NaN NaN 101637.1 NaN 5013 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7226 39.777 NaN 48377 35 0 8386.7 0.263 -1 0 32 441.7879131732742 881.5612734133484 2 441.7880859375 MULTI HCD FTMS 0 0 0 7222 12272.2841796875 0.14884741147460814 23 -0.6593437194824219 4 NaN NaN 1 SN 2 -1 6.4537 0 0 0.73207 0 0 96.11505866901093 581.3447359674436 677.4597946364546 0 0 0 0 0 0 0 0 0 SN 0.73207 - 3 + NaN NaN 93879.7 NaN 5014 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7227 39.78 NaN 36639 35 0 5633.9 0.261 + 186 AESYRIQTY 9 18 565.7778618851636 1129.541170837127 2 566.279541015625 MULTI HCD FTMS 0 0 0 7222 10239.642578125 0.49894685009582657 1 -0.02654266357421875 5 Unmodified _AESYRIQTY_ ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;nc|ENSG00000140694|O95453-4|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 5.296884461304476 0.3108627248283497 1 TY 2 7 22.959 0 0 2.0326 0 0 847.4194109950993 0 847.4194109950993 0 22.95880017344075 0 0 0 0.5 0 0 0 + TY 2.0326 + + 2 NaN NaN 85344.2 NaN 5015 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7228 39.783 NaN 76388 35 0 7357 0.261 + -1 AMPDIVTSII 10 31 551.2971725531999 NaN 0 551.2849731445312 PEAK HCD FTMS 0 0 0 7222 6280.2392578125 0.6994976989652686 5 -0.1425933837890625 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AMPDIVTSII_ REV__ENST00000396033.6_1_10:33200822-33200915:-|nuORF 1.6526216038709556 0.33876987398426067 1 AV 2 -1 7.9588 0 0 0.72315 0 0 132.0974101098622 795.3364962213499 927.433906331212 0 0 0 0 0 0 0 0 0 AV 0.72315 - 3 + NaN NaN 102856.9 NaN 5016 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7229 39.787 NaN 21373 35 0 4936.2 0.261 -1 PHQGCHWIQV 10 17 631.2978273843278 1260.5811018354555 2 631.7997436523438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _PHQGC(Carbamidomethyl (C))HWIQV_ ENST00000393847.5_1_16:68023240-68023984:-|nuORF 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102659.4 NaN 5017 2210 7222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7231 39.792 NaN 339130 35 0 51486 0.327 -1 DMHTEVTTL 9 56 531.7423516043784 1061.4701502755568 2 531.7423706054688 MULTI HCD FTMS 0 0 0 7230 111773.796875 0.12011997282696305 8 -0.23523330688476562 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 37.97399986684836 0.07464525285885698 1 VTT{I|L} 4 -1 47.779 0 0 4.5012 0 0 629.2106800763687 0 629.2106800763687 0 20.211892990699383 0 0 0 1.1861818737241734 0 0.8494850021680094 0 VTT{I|L} 4.5012 + + 286 NaN NaN 128492.3 NaN 5018 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7232 39.796 NaN 132930 35 0 33958 0.261 + 19186 NIEGPDAKL 9 29 478.7560490870676 955.4975452409352 2 478.7559814453125 MULTI HCD FTMS 0 0 0 7230 62243.5 0.015324497499414808 22 -0.6328010559082031 2 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 35.61225514009592 0.08548698421724198 1 {[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L} 9 3 + 59.103 0 0 6.1855 6.1855 85.045 0 0 0 20.884767769392738 37.21848749616356 20.884767769392738 3.5391719390811716 0 1.5 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L} 6.1855;5.8151;5.2218 -;+;- + 54 NaN NaN 119803.8 NaN 5019 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7233 39.8 NaN 83419 35 0 21042 0.261 + 32428 WASTSIKL 8 32 453.25931180026544 NaN 0 453.2686462402344 PEAK HCD FTMS 0 0 0 7230 5892.736328125 1 0 0 3 Unmodified _WASTSIKL_ REV__ENSG00000129003|ENST00000644861|VPS13C;REV__ENST00000558338.1_1_15:62199375-62209725:-|nuORF;REV__nc|ENSG00000129003|Q709C8-2|VPS13C;REV__nc|ENSG00000129003|Q709C8-3|VPS13C;REV__nc|ENSG00000129003|Q709C8-4|VPS13C;REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 6.723162845929126 0.38822285293237185 1 AS 2 -1 12.831 0 0 1.4186 0 0 186.08138575409856 557.3316744440061 743.4130601981046 0 0 0 0 0 0 0 0.4247425010840047 0 AS 1.4186 + + 7 + NaN NaN 92776.1 NaN 5020 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7234 39.803 NaN 76143 35 0 11776 0.261 + 25001 RYVPRASYF 9 36 579.8061189514871 1157.597684969774 2 579.8065185546875 MULTI HCD FTMS 0 0 0 7230 38972.8203125 0.412453078853983 6 -0.17568588256835938 4 Unmodified _RYVPRASYF_ ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 5.296884461304476 0.3108627248283497 1 RYV 3 6 25.177 0 0 2.175 0 0 0 736.3412168328183 736.3412168328183 23.58349385648225 0 0 0 0 0.5 0 0 0 + RYV 2.175 + + 9 + NaN NaN 109307.4 NaN 5021 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7235 39.806 NaN 101360 35 0 13759 0.261 + 11482 IYQKAFEHL 9 39 574.8087644762775 1147.6029760193549 2 574.808837890625 MULTI HCD FTMS 0 0 0 7230 23660.900390625 0.6374459458734171 -1 0.02654266357421875 5 Unmodified _IYQKAFEHL_ ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 18.1463463914782 0.20357593197100715 1 {I|L}YQK 4 5 50.962 0 0 4.4407 0 0 0 612.2775362604124 612.2775362604124 43.97222222092239 0 0 0 0 0.4247425010840047 2 0 0.3807196863200844 + {I|L}YQK 4.4407 + + 18 + NaN NaN 111141.2 NaN 5022 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7236 39.81 NaN 35839 35 0 4916.7 0.261 + 25600 SFYPPATVHF 10 26 583.2855736542872 1164.5565943753743 2 583.28515625 MULTI HCD FTMS 0 0 0 7230 19888.060546875 0.6860225563712219 1 -0.03308868408203125 6 Unmodified _SFYPPATVHF_ REV__ENST00000558229.1_15:82983798-82985220:-|nuORF;REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF 3.2813086475875832 0.45793521633868084 1 H{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6714 0 0 862.4232655255875 0 862.4232655255875 0 19.463950151760656 0 0 0 0 0 0 0 H{M(Oxidation (M))|F} 1.6714 + + 1 NaN NaN 81669.1 NaN 5023 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7237 39.813 NaN 45496 35 0 6641.9 0.261 + 187 AESYRIQTY 9 25 565.7778618851636 1129.541170837127 2 565.7766723632812 MULTI HCD FTMS 0 0 0 7230 16431.6015625 0.803443133987664 2 -0.059604644775390625 7 Unmodified _AESYRIQTY_ ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;nc|ENSG00000140694|O95453-4|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 10.150570793230772 0.27265765907388223 1 {I|L}QTY 4 5 32.423 0 0 2.8704 0 0 606.2775746076187 0 606.2775746076187 0 32.422750325201406 0 0 0 0.5 0 0 0 + {I|L}QTY 2.8704 + + 10 NaN NaN 105619.1 NaN 5024 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7238 39.816 NaN 108720 35 0 9883.5 0.261 + 15605 LPEAGPGRTL 10 32 505.78728891441193 1009.5600248956239 2 505.78521728515625 MULTI HCD FTMS 0 0 0 7230 15803.322265625 0.6654335235586037 -2 0.056362152099609375 8 Unmodified _LPEAGPGRTL_ ENSG00000148926|ENST00000278175|ADM 6.1918466704503565 0.44252927588099017 1 {I|L}PEAG 5 5 37.959 0 0 3.7599 0 0 0 539.2926729791624 539.2926729791624 37.95880017344075 0 0 0 0 0 0 0 0 + {I|L}PEAG 3.7599 + + 14 + NaN NaN 99857.6 NaN 5025 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7239 39.82 NaN 43650 35 0 8104.2 0.261 + -1 SHCTVLCAPC 10 34 545.7284871703515 1089.442421407503 2 545.7288818359375 MULTI HCD FTMS 0 0 0 7230 7217.61279296875 0.10457124608461034 10 -0.2948188781738281 9 Carbamidomethyl (C) _SHCTVLC(Carbamidomethyl (C))APC_ REV__ENSG00000130589|ENST00000467148|HELZ2;REV__ENST00000370082.1_1_20:62201547-62204491:-|nuORF;REV__nc|ENSG00000130589|Q9BYK8|HELZ2 1.4819007175156935 0.4674597685733628 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.36527 0 0 128.95268859675917 810.3946016900999 939.3472902868591 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.36527 - 2 + NaN NaN 85449.1 NaN 5026 2211 7230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7241 39.825 NaN 657640 35 0 238990 0.327 + 27779 TAVHDAIL 8 66 420.2346778369871 838.4548027407742 2 420.2346496582031 MULTI HCD FTMS 0 0 0 7240 579056.3125 0.2759239336446031 6 -0.17566680908203125 1 Unmodified _TAVHDAIL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF 53.57557251787612 0.1056313556323 1 A{I|L}{I|L} 3 5 32.307 0 0 3.8532 0 0 523.2368641584 0 523.2368641584 0 8.26606256887672 0 0 0 1 0 0 0 + A{I|L}{I|L} 3.8532 + + 27 NaN NaN 202377.6 NaN 5027 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7242 39.829 NaN 334060 35 0 30053 0.261 + 11935 KFIWTNHKF 9 72 407.55733180093375 1219.6501660030012 3 407.5573425292969 MULTI HCD FTMS 0 0 0 7240 125481.4375 0.50009371917153 -3 0.08945083618164062 2 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 29.84058131909904 0.11198220037953927 1 K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F} 9 0 + 58.556 0 0 4.801 4.801 84.632 0 0 0 44.57625045844914 12.887955392469692 12.887955392469692 8.02378753635658 0 0.6989700043360187 0 0 0.3252574989159953 + + K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTNHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WTGGHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTGGHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}W[YN]P[RP];K{M(Oxidation (M))|F}{I|L}WT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RP];{M(Oxidation (M))|F}K{I|L}W[YN]P[RP];{M(Oxidation (M))|F}K{I|L}WT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RP];K{M(Oxidation (M))|F}[QP]Y{[RE]|[WV]}[RP];{M(Oxidation (M))|F}K[QP]Y{[RE]|[WV]}[RP] 4.801;4.1431;4.046;3.3882;3.2866;3.0398;2.6287;2.3819;2.018;1.3602 +;-;-;-;-;-;-;-;-;- + 312 + NaN NaN 135645.6 NaN 5028 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7243 39.833 NaN 37089 35 0 6323.5 0.261 -1 TQAAVRPWAP 10 26 569.8038619029455 1137.593170872691 2 569.8035888671875 MULTI HCD FTMS 0 0 0 7240 19767.45703125 0.15863442711351536 8 -0.23526763916015625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TQAAVRPWAP_ ENSG00000182957|ENST00000382108|SPATA13;ENST00000466831.2_1_13:24796959-24798912:+|nuORF 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.61443 0 0 148.11738440507776 839.3901461236936 987.5075305287714 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.61443 - 2 + NaN NaN 91912.9 NaN 5029 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7244 39.836 NaN 25674 35 0 5018.9 0.261 + -1 CIIFCMDMM 9 20 626.7304846595999 1251.4464163859998 2 626.7302856445312 MULTI HCD FTMS 0 0 0 7240 10492.146484375 0.1825993741154246 5 -0.14259719848632812 4 2 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))IIFC(Carbamidomethyl (C))M(Oxidation (M))DMM(Oxidation (M))_ REV__ENSG00000174429|ENST00000311955|ABRA 0.5247636613948944 0.34703895399870666 1 P 1 -1 3.9794 0 0 0.31798 0 0 556.4857363096311 594.8823336236936 1151.3680699333247 0 0 0 0 0 0 0 0 0 P 0.31798 - 1 + NaN NaN 85831.2 NaN 5030 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7245 39.839 NaN 34652 35 0 4843 0.263 -1 WCPCLALL 8 24 488.24241377419327 NaN 0 488.2415466308594 PEAK HCD FTMS 0 0 0 7240 13930.84765625 0.45508572087754556 5 -0.14259719848632812 5 Carbamidomethyl (C) _WC(Carbamidomethyl (C))PCLALL_ ENST00000474528.5_1_2:73169413-73169710:-|nuORF 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93389.9 NaN 5031 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7246 39.843 NaN 64472 35 0 6811.7 0.261 + 1893 CYRYRRAN 8 23 551.2700279431897 NaN 0 551.2849731445312 PEAK HCD FTMS 0 0 0 7240 3677.4287109375 0.4669841951898242 5 -0.14259719848632812 6 Unmodified _CYRYRRAN_ ENSG00000022567|ENST00000517878|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4 5.230669730166228 0.38822285293237185 1 T 1 8 6.9061 0 0 0.62753 0 0 149.07602533864207 847.3751314752561 996.4511568138983 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.62753 - 5 + NaN NaN 105849.5 NaN 5032 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7247 39.846 NaN 14322 35 0 1805.1 0.261 + -1 VHRRGCFCR 9 17 624.3038817457825 NaN 0 624.3041381835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C) _VHRRGC(Carbamidomethyl (C))FC(Carbamidomethyl (C))R_ REV__ENST00000405375.5_1_6:36646636-36651982:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90295.8 NaN 5033 2212 7240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7249 39.851 NaN 216340 35 0 23704 0.327 + 89 ADKMDMSL 8 47 492.7042814229636 983.3940099127273 2 492.7043151855469 MULTI HCD FTMS 0 0 0 7248 132009.109375 0.5982839895225381 7 -0.20875167846679688 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 61.60191391372663 0.05594364057024217 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5 3 49.737 0 0 5.0577 0 0 356.16890151191564 0 356.16890151191564 0 34.075221787320515 0 0 0 1.274227503252014 0 0.3807196863200844 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.0577 + + 36 NaN NaN 120915.9 NaN 5034 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7250 39.856 NaN 145820 35 0 16900 0.261 + 34664 YPTEDYKV 8 43 507.74261474978346 1013.4706765663669 2 507.74224853515625 MULTI HCD FTMS 0 0 0 7248 71034.015625 0.8750195120214261 -1 0.026515960693359375 2 Unmodified _YPTEDYKV_ ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;nc|ENSG00000167515|Q9UL33|TRAPPC2L 41.8396318013385 0.20729740072799377 1 YP{[ET]|[MV]}D 5 3 43.729 0 0 4.3147 0 0 0 405.21417874741707 405.21417874741707 20.787224407675033 0 0 0 0 1 1.2218487496163564 0.3807196863200844 0 + YP{[ET]|[MV]}D 4.3147 + + 37 + NaN NaN 112291.9 NaN 5035 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7251 39.859 NaN 99174 35 0 8913.9 0.261 + 9327 HPRTFLPQE 9 42 562.7957015412279 1123.5768501492557 2 562.7953491210938 MULTI HCD FTMS 0 0 0 7248 44021.24609375 0.05339403904480198 48 -1.3356246948242188 3 Unmodified _HPRTFLPQE_ ENST00000571243.1_1_17:7228777-7229792:-|nuORF 5.731851221503515 0.3075653528928475 1 HPV 3 7 31.198 0 0 2.7767 0 0 0 787.3744725446556 787.3744725446556 27.703037561203843 0 0 0 0 0.5 0 0 0 HPV 2.7767 - 15 + NaN NaN 102166.8 NaN 5036 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7252 39.863 NaN 53436 35 0 8155.3 0.262 + 34978 YSSERSVL 8 26 470.7404760111552 939.4663990891104 2 470.7400817871094 MULTI HCD FTMS 0 0 0 7248 21197.65625 0.04075237294370462 17 -0.47705078125 4 Unmodified _YSSERSVL_ ENSG00000138623|ENST00000261918|SEMA7A;ENST00000569617.1_1_15:74703630-74703961:-|nuORF;nc|ENSG00000138623|O75326-2|SEMA7A 4.3292370932331545 0.5355693454741696 1 V{I|L} 2 6 20.969 0 0 2.232 0 0 709.3043690412125 0 709.3043690412125 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 2.232 + + 1 NaN NaN 91734 NaN 5037 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7253 39.866 NaN 54288 35 0 14511 0.261 + 35239 YVNQLFSPRA 10 22 597.8152163227822 1193.6158797123644 2 598.3154296875 MULTI HCD FTMS 0 0 0 7248 17940 0.32206020241944866 12 -0.3456268310546875 5 Unmodified _YVNQLFSPRA_ REV__ENST00000451270.6_1_15:60678230-60690176:-|nuORF 4.897010918128616 0.4493830473644964 1 KQV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5 -1 29.521 0 0 2.4732 0 0 561.2924061505875 0 561.2924061505875 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0 KQV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 2.4732 - 16 NaN NaN 103962.1 NaN 5038 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7254 39.869 NaN 66244 35 0 7176.3 0.261 + 1894 CYRYRRAN 8 29 551.2700279431897 NaN 0 551.2844848632812 PEAK HCD FTMS 0 0 0 7248 4253.8759765625 0.5401852776762442 6 -0.175628662109375 6 Unmodified _CYRYRRAN_ ENSG00000022567|ENST00000517878|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4 8.593279151180031 0.38822285293237185 1 A 1 7 5.4846 0 0 0.49836 0 0 132.04598736799738 894.4214028239344 1026.4673901919318 0 0 0 0 0 0 0 0 0 + A 0.49836 + + 1 + NaN NaN 99240.3 NaN 5039 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7255 39.873 NaN 136730 35 0 10393 0.263 + 16287 LQPQILIQQQ 10 58 403.5717256302197 1207.6933474908592 3 403.5716552734375 MULTI HCD FTMS 0 0 0 7248 25977.390625 0.8844247917777981 -1 0.026515960693359375 7 Unmodified _LQPQILIQQQ_ REV__ENSG00000185591|ENST00000327443|SP1;REV__nc|ENSG00000185591|P08047-2|SP1;REV__nc|ENSG00000185591|P08047-3|SP1 1.7422754331352037 0.46608156381052757 1 VE 2 -1 9.464 0 0 0.78364 0 0 547.3361830394905 429.2251595433444 976.5613425828349 0 0 0 0 0 0 0 0 0 VE 0.78364 - 11 + NaN NaN 102003.8 NaN 5040 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7256 39.876 NaN 17621 35 0 4709 0.261 + -1 MPKVFCMKC 9 11 616.768447682864 1231.522342432528 2 616.768310546875 MULTI HCD FTMS 0 0 0 7248 13440.59375 0.44474676241687233 11 -0.315826416015625 8 2 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))PKVFC(Carbamidomethyl (C))M(Oxidation (M))KC(Carbamidomethyl (C))_ REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense 0 0.3510170533115441 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94943.9 NaN 5041 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7257 39.879 NaN 64344 35 0 9555.4 0.263 -1 MFDTTPHS 8 36 476.1981833591701 NaN 0 476.19854736328125 PEAK HCD FTMS 0 0 0 7248 16395.990234375 0.5490969976538232 -68 1.8495025634765625 9 Oxidation (M) _M(Oxidation (M))FDTTPHS_ ENSG00000089351|ENST00000317991|GRAMD1A;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A 2.302733041254933 0.38822285293237185 1 D 1 -1 3.4949 0 0 0.36773 0 0 426.22063322049024 406.11277185611567 832.3334050766059 0 0 0 0 0 0 0 0 0 D 0.36773 + + 2 + NaN NaN 94298.6 NaN 5042 2213 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7259 39.885 NaN 218520 35 0 53030 0.327 + 10354 ILTPESTHPV 10 42 547.2979218177405 1092.581290702281 2 547.2855834960938 MULTI HCD FTMS 0 0 0 7258 16259.662109375 1 0 0 1 Unmodified _ILTPESTHPV_ REV__ENSG00000114841|ENST00000420323|DNAH1;REV__ENST00000486752.5_1_3:52422617-52434459:+|nuORF;REV__ENST00000488988.5_1_3:52422617-52433783:+|nuORF;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1 6.2057823575117 0.44245551207394906 1 [DV]{I|L} 3 -1 27.447 0 0 2.5121 0 0 0 762.3793613412059 762.3793613412059 6.249387366082999 0 0 0 0 0 1.6989700043360187 0 0 [DV]{I|L} 2.5121 - 11 NaN NaN 125006 NaN 5043 2214 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7260 39.889 NaN 96391 35 0 11306 0.261 + 6656 FPNADSKAL 9 40 481.7509543119735 961.487355690747 2 481.7506408691406 MULTI HCD FTMS 0 0 0 7258 49784.4609375 0.6060140446964543 4 -0.11592483520507812 2 Unmodified _FPNADSKAL_ ENSG00000100030|ENST00000215832|MAPK1 27.223235318498237 0.1251536255799991 1 {M(Oxidation (M))|F}PNAD[KS][{I|L}A] 9 0 + 47.598 0 0 4.9504 4.9504 86.175 0 0 0 38.3771376077312 3.4016622314967293 3.4016622314967293 9.208187539523749 0 1.3494850021680094 0 0 0 + + {M(Oxidation (M))|F}PNAD[KS][{I|L}A];{M(Oxidation (M))|F}PGGAD[KS][{I|L}A] 4.9504;3.9927 +;- + 47 + NaN NaN 98475.2 NaN 5044 2214 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7261 39.893 NaN 167090 35 0 14318 0.261 + -1 RAMASRGPC 9 60 511.23574826235716 1020.4569435915143 2 512.2406005859375 MULTI HCD FTMS 0 0 0 7258 80326.875 0.5669249242314718 -4 0.11937332153320312 3 Carbamidomethyl (C),Oxidation (M) _RAM(Oxidation (M))ASRGPC(Carbamidomethyl (C))_ REV__ENST00000580790.1_1_10:75459274-75472997:-|nuORF 13.90604991867851 0.24021115267848145 1 ENNS[NP]A{M(Oxidation (M))|F} 8 -1 36.322 0 0 3.5594 0 0 129.08650455136802 0 129.08650455136802 0 11.01703302909064 0 0 0 0.28872548999643577 0 0 0.7059771852360797 ENNS[NP]A{M(Oxidation (M))|F} 3.5594 - 341 + NaN NaN 125812 NaN 5045 2214 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7262 39.896 NaN 59843 35 0 15069 0.261 + 5134 FESLDNQEF 9 33 564.7459435578265 1127.477334182453 2 564.7460327148438 MULTI HCD FTMS 0 0 0 7258 15561.9814453125 0.6557581110179181 1 -0.023220062255859375 4 Unmodified _FESLDNQEF_ ENSG00000112312|ENST00000230056|GMNN 3.2813086475875832 0.32614229037259 1 E{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8598 0 0 833.3566151349625 0 833.3566151349625 0 20.969100130080562 0 0 0 0 0 0 0 + E{M(Oxidation (M))|F} 1.8598 + + 2 NaN NaN 88301.9 NaN 5046 2214 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7263 39.899 NaN 39794 35 0 4870.7 0.261 -1 QADFLDKQM 9 32 556.2583217080297 1110.5020904828593 2 556.258056640625 MULTI HCD FTMS 0 0 0 7258 19560.787109375 0.19214415741975072 19 -0.5399703979492188 5 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F}{I|L}[RN][{M(Oxidation (M))|F}T] 6 -1 16.171 0 0 1.4562 0 0 314.1177653869593 0 314.1177653869593 0 16.170912423450407 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}[RN][{M(Oxidation (M))|F}T] 1.4562 - 10 + NaN NaN 101930.3 NaN 5047 2214 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7264 39.903 NaN 48978 35 0 6553.3 0.262 + 16403 LSKILRAKKHK 11 37 441.29743756651453 NaN 0 441.2975158691406 PEAK HCD FTMS 0 0 0 7258 24439.986328125 0.5282698633874037 -54 1.446380615234375 6 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 1 V 1 11 3.9794 0 0 0.45191 0 0 359.3077524750228 419.1814058893188 778.4891583643416 0 0 0 0 0 0 0 0 0 V 0.45191 - 5 + NaN NaN 84625 NaN 5048 2214 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7266 39.908 NaN 714220 35 0 96377 0.327 + 11891 KFIDTTSKF 9 78 543.79515636783 1085.57575980246 2 543.7952270507812 MULTI HCD FTMS 0 0 0 7265 631831.5 0.0740948808126342 15 -0.4206047058105469 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 162.31443362245884 8.008138431551248E-09 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 106.7 0 0 9.829 9.829 90.304 0 0 0 3.199601741485111 3.199601741485111 3.199601741485111 3.199601741485111 0 3.0114393726401687 0 1.6808845489566888 1.4194451763165201 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}TTSK{M(Oxidation (M))|F};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}TTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}K{M(Oxidation (M))|F};[KS]TT{M(Oxidation (M))|F}D{I|L}K{M(Oxidation (M))|F};[KS][DV][Y{I|L}]SK{M(Oxidation (M))|F};[KS]TT{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9.829;9.5342;9.1641;8.5255;6.2002;4.8967;4.683;4.5804;4.2909;4.1133 +;+;-;-;-;-;-;-;-;- + 1394 NaN NaN 195862.1 NaN 5049 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7267 39.912 NaN 533290 35 0 41600 0.261 + -1 HPLKAMSFL 9 78 530.2863663466561 1058.5581797601121 2 530.2857666015625 MULTI HCD FTMS 0 0 0 7265 155653.75 0.6511249537482738 -5 0.1425933837890625 2 Oxidation (M) _HPLKAM(Oxidation (M))SFL_ REV__ENSG00000100302|ENST00000216127|RASD2 29.081581746732265 0.1154664336125038 1 H[VG]{I|L}[{M(Oxidation (M))|F}V]{I|L}Q{M(Oxidation (M))|F} 9 -1 + 36.903 0 0 3.4861 3.4861 88.551 0 0 0 5.591408809689192 0.9028874993307383 0.9028874993307383 36.90282196709561 0 0 0 0 0.7059771852360797 H[VG]{I|L}[{M(Oxidation (M))|F}V]{I|L}Q{M(Oxidation (M))|F} 3.4861 - 682 + NaN NaN 163427.1 NaN 5050 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7268 39.916 NaN 213630 35 0 34587 0.261 + 21726 QADRAFQQL 9 42 538.7778915041357 1075.5412300750713 2 538.77783203125 MULTI HCD FTMS 0 0 0 7265 58533.58203125 0.685288461837484 2 -0.059635162353515625 3 Unmodified _QADRAFQQL_ ENSG00000189241|ENST00000368608|TSPYL1 58.678817012210395 0.019429721296335044 1 Q[WD]QQ{I|L} 6 4 40.992 0 0 3.8112 0 0 259.15352065254064 0 259.15352065254064 0 28.271599310825053 0 0 0 0 0 0.8807196863200843 1.805462187404089 Q[WD]QQ{I|L} 3.8112 - 74 NaN NaN 118738.1 NaN 5051 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7269 39.919 NaN 176940 35 0 18099 0.261 -1 INDKMHFSL 9 56 560.7764879846692 NaN 0 560.7659912109375 PEAK HCD FTMS 0 0 0 7265 5561.84228515625 0.28104775406124033 -8 0.23200225830078125 4 Oxidation (M) _INDKM(Oxidation (M))HFSL_ ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380294-6381826:-|nuORF 7.289230182591677 0.2599242500475609 1 SVH{M(Oxidation (M))|F}VT 6 -1 29.87 0 0 2.6681 0 0 147.09075614908232 299.1138094537719 446.20456560285425 0 0 0 0 0 0 0 0.5 0 SVH{M(Oxidation (M))|F}VT 2.6681 - 157 + NaN NaN 104350.1 NaN 5052 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7270 39.922 NaN 165610 35 0 23038 0.262 + 27820 TAYVGSAVM 9 29 457.71807026574356 913.4215875982871 2 457.7179870605469 MULTI HCD FTMS 0 0 0 7265 69487.9375 0.45162599363795486 -6 0.17241287231445312 5 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 65.23502041540118 0.010630085227462206 1 [TA]YSGVAV{M(Oxidation (M))|F} 9 2 + 80.429 0 0 8.8052 8.8052 91.438 0 0 0 8.05462187404089 8.05462187404089 8.05462187404089 8.05462187404089 0 1.7302046884880937 1.3010299956639813 0.805462187404089 0 [TA]YSGVAV{M(Oxidation (M))|F};[TA]YVGSAV{M(Oxidation (M))|F};[TA]YV{[QS]|[NT]}V{M(Oxidation (M))|F};[YT]ASGVAV{M(Oxidation (M))|F};[YT]AVGSAV{M(Oxidation (M))|F};[YT]{[QS]|[NT]}VAV{M(Oxidation (M))|F};[YT]AV{[QS]|[NT]}V{M(Oxidation (M))|F} 8.8052;7.9234;7.4767;6.939;6.474;5.7131;5.6105 -;+;-;-;-;-;- + 220 NaN NaN 104084.9 NaN 5053 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7271 39.926 NaN 39727 35 0 5474.2 0.261 + 38 AAPAASIMVA 10 20 451.24405718577 900.47356143834 2 451.2441101074219 MULTI HCD FTMS 0 0 0 7265 36199.76953125 1 0 0 6 Unmodified _AAPAASIMVA_ ENSG00000129951|ENST00000520876|PLPPR3;nc|ENSG00000129951|Q6T4P5-2|PLPPR3;nc|ENSG00000129951|Q6T4P5-3|PLPPR3 1.844237919475145 0.46554186016084764 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88517 NaN 5054 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7272 39.929 NaN 73258 35 0 26675 0.261 + -1 CMEYPCPRSL 10 29 438.18743187892284 1311.5404662369685 3 438.1875305175781 MULTI HCD FTMS 0 0 0 7265 16846.59375 0.5177462941979646 6 -0.17876815795898438 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))MEYPC(Carbamidomethyl (C))PRSL_ REV__ENSG00000171815|ENST00000306549|PCDHB1 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104958.1 NaN 5055 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7273 39.932 NaN 119840 35 0 28465 0.261 + 7958 GEDLLFYL 8 34 485.25010914256416 NaN 0 485.2354431152344 PEAK HCD FTMS 0 0 0 7265 3369.594482421875 0.4451908701973762 -1 0.023220062255859375 8 Unmodified _GEDLLFYL_ ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2 5.230669730166228 0.38822285293237185 1 AD 2 7 14.464 0 0 1.4935 0 0 596.3579663450859 183.0413759820922 779.399342327178 0 0 0 0 0 0 0 0.3494850021680094 0 AD 1.4935 - 13 + NaN NaN 99117.1 NaN 5056 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7274 39.936 NaN 69239 35 0 10607 0.261 + 20802 PHHVDLEIST 10 30 574.2907481779872 1146.5669434227743 2 574.2911376953125 MULTI HCD FTMS 0 0 0 7265 28757.861328125 0.006509406481353215 161 -4.530269622802734 9 Unmodified _PHHVDLEIST_ REV__ENSG00000183853|ENST00000359209|KIRREL1;REV__nc|ENSG00000183853|Q96J84-2|KIRREL1 10.073929032068715 0.4168838835836452 1 DT 2 -1 27.959 0 0 2.4385 0 0 912.4528065412125 0 912.4528065412125 0 23.979400086720375 0 0 0 0.5 0 0.3494850021680094 0 DT 2.4385 - 6 NaN NaN 94201.4 NaN 5057 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7275 39.939 NaN 81512 35 0 8097.7 0.261 + 8532 HAIASAVPQT 10 38 497.7692346348504 993.5239163365009 2 497.76910400390625 MULTI HCD FTMS 0 0 0 7265 16393.966796875 0.2255462766278182 5 -0.15230560302734375 10 Unmodified _HAIASAVPQT_ REV__ENST00000568636.5_1_16:718678-720341:+|nuORF;REV__ENST00000602564.5_1_16:719540-721765:+|nuORF 3.944395688203298 0.4544253912184634 1 S 1 -1 8.8515 0 0 0.89092 0 0 201.10812125976298 702.3601778619749 903.4682991217378 0 0 0 0 0 0 0 0.4247425010840047 0 S 0.89092 + + 3 + NaN NaN 95797 NaN 5058 2215 7265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7277 39.944 NaN 93377 35 0 21148 0.327 + 19187 NIEGPDAKL 9 29 478.7560490870676 955.4975452409352 2 478.7558288574219 MULTI HCD FTMS 0 0 0 7276 45790.91796875 0.011273832736077148 27 -0.762115478515625 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 29.84058131909904 0.11198220037953927 1 {[QV]|[N{I|L}]|[RA]|[KV]}E 3 6 39.437 0 0 4.1274 0 0 0 596.3049542587664 596.3049542587664 21.478174818886373 0 0 0 0 1 2 0 0.3494850021680094 + {[QV]|[N{I|L}]|[RA]|[KV]}E 4.1274 + + 12 NaN NaN 95096.2 NaN 5059 2216 7276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7278 39.949 NaN 194900 35 0 21208 0.261 + 9397 HPTLLQHAL 9 55 515.2959828017332 1028.5774126702663 2 515.2955322265625 MULTI HCD FTMS 0 0 0 7276 43563.296875 0.8637215323496599 -2 0.059680938720703125 2 Unmodified _HPTLLQHAL_ ENSG00000103148|ENST00000611875|NPRL3 32.78568957990786 0.09846250359632436 1 {M(Oxidation (M))|F}A{[CP]|[EA]}EAEM 8 9 21.758 0 0 2.1153 0 0 132.209014929612 0 132.209014929612 0 -2.3059060631317188 -2.3059060631317188 0 0 0.23020468848809378 0 0.7059771852360797 0 {M(Oxidation (M))|F}A{[CP]|[EA]}EAEM 2.1153 - 147 + NaN NaN 108732.4 NaN 5060 2216 7276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7279 39.952 NaN 53702 35 0 10620 0.261 + -1 YINNNMLLLA 10 28 597.8152163227822 1193.6158797123644 2 597.8148193359375 MULTI HCD FTMS 0 0 0 7276 23081.84375 0.23664826757162702 13 -0.3520851135253906 3 Oxidation (M) _YINNNM(Oxidation (M))LLLA_ REV__tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1 3.5964929083625545 0.45626689593999237 1 KQV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5 -1 24.833 0 0 2.0805 0 0 561.2909413068375 0 561.2909413068375 0 21.73393743112328 0 0 0 0.5 0 0 0 KQV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 2.0805 - 20 NaN NaN 95631.8 NaN 5061 2216 7276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7280 39.956 NaN 73626 35 0 18660 0.261 -1 0 34 522.1339571359753 521.1266806693752 1 522.1350708007812 MULTI HCD FTMS 0 0 0 7276 19825.583984375 0.5623359366309323 -66 1.7996902465820312 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92853.1 NaN 5062 2216 7276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7281 39.959 NaN 66200 35 0 28611 0.261 + 21072 PLYSSSLWGPA 11 21 589.2981500462417 1176.5817471592834 2 589.29833984375 MULTI HCD FTMS 0 0 0 7276 16706.091796875 0.3446495051056043 8 -0.22291946411132812 5 Unmodified _PLYSSSLWGPA_ ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104943.2 NaN 5063 2216 7276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7282 39.962 NaN 114150 35 0 13373 0.263 -1 RYQQWMERF 9 46 453.88009176156794 1358.6184458849038 3 453.8759460449219 MULTI HCD FTMS 0 0 0 7276 15522.900390625 0.1305859205893145 -6 0.17905426025390625 6 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 21.590151480376914 0.17382222009858564 1 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 -1 29.961 0 0 2.2052 0 0 614.2849731284389 0 614.2849731284389 0 29.960762528683702 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 2.2052 - 29 + NaN NaN 116123.4 NaN 5064 2216 7276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7284 39.967 NaN 511720 35 0 57953 0.327 + 11936 KFIWTNHKF 9 79 407.55733180093375 1219.6501660030012 3 407.5573425292969 MULTI HCD FTMS 0 0 0 7283 247135.125 0.9849323235492179 2 -0.05954742431640625 1 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 55.50274090549119 0.023872834264864425 1 K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F} 9 0 + 85.663 0 0 7.0236 7.0236 89.818 0 0 0 73.2726645768573 13.46787486224656 13.46787486224656 9.208187539523749 0 1.0941876774005248 0 0.3807196863200844 1.4361818737241734 + + K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WTGGHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WT{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]} 7.0236;6.2686;4.5691 +;-;- + 320 + NaN NaN 154166.3 NaN 5065 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7285 39.972 NaN 623130 35 0 132050 0.261 + 35886 YYSHLEGARF 10 64 414.8681001610079 1241.5824710832237 3 414.8681335449219 MULTI HCD FTMS 0 0 0 7283 209605.484375 1 0 0 2 Unmodified _YYSHLEGARF_ ENSG00000142207|ENST00000382751|URB1 34.93206674587334 0.18938571726943593 1 YY[HS]{I|L}E 6 4 61.833 0 0 4.9801 0 0 0 446.21665526597064 446.21665526597064 52.16673951632272 0 0 0 0 1.2302046884880937 1.6989700043360187 0.7134679910804405 0 + YY[HS]{I|L}E 4.9801 + + 92 + NaN NaN 175977.1 NaN 5066 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7286 39.975 NaN 425690 35 0 64599 0.261 + 10801 ISTEHDPVL 9 60 505.76143557648055 1009.5083182197611 2 505.7613220214844 MULTI HCD FTMS 0 0 0 7283 201359.0625 0.7291086868679554 -1 0.023174285888671875 3 Unmodified _ISTEHDPVL_ ENSG00000135999|ENST00000258484|EPC2 43.85829265575387 0.04763305254408404 1 PD[YC(Carbamidomethyl (C))]{I|L}{I|L} 6 8 30.379 0 0 3.0093 0 0 230.1626454084 0 230.1626454084 0 23.389399919613965 0 0 0 0.8807196863200843 0 0.7302046884880937 0 PD[YC(Carbamidomethyl (C))]{I|L}{I|L} 3.0093 - 63 NaN NaN 165084.2 NaN 5067 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7287 39.979 NaN 169290 35 0 62890 0.261 + 15210 LNKYPIFSH 9 37 559.8031482949362 1117.5917436566724 2 559.80322265625 MULTI HCD FTMS 0 0 0 7283 54626.68359375 0.4511204856518493 -3 0.082855224609375 4 Unmodified _LNKYPIFSH_ ENST00000522941.5_2_8:130867908-130883640:-|nuORF 10.823927491677226 0.26684000660059787 1 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 3 7 4.1812 0 0 0.37413 0 0 0 742.3877047174436 742.3877047174436 0.6863623584101237 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 0.37413 - 24 + NaN NaN 107974 NaN 5068 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7288 39.982 NaN 98456 35 0 14225 0.261 + 695 APWTLEKF 8 36 496.26469793421523 990.5148429352305 2 496.2638244628906 MULTI HCD FTMS 0 0 0 7283 36580.80859375 0.781007579320997 -1 0.023174285888671875 5 Unmodified _APWTLEKF_ REV__ENST00000424697.5_1_7:99667832-99667979:-|nuORF 2.577480529830294 0.5381683276125971 1 {I|L} 1 -1 1.5938 0 0 0.16091 0 0 494.73803126706486 379.67820154361567 874.4162328106805 0 0 0 0 0 0 0 0 0 {I|L} 0.16091 + + 5 + NaN NaN 85569.3 NaN 5069 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7289 39.985 NaN 54175 35 0 9357.6 0.261 -1 RALPDVMQGMV 11 24 624.8070954593093 1247.5996379854184 2 624.8072509765625 MULTI HCD FTMS 0 0 0 7283 41816.1328125 1 0 0 6 2 Oxidation (M) _RALPDVM(Oxidation (M))QGM(Oxidation (M))V_ ENSG00000119866|ENST00000642384|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A 4.5288652416199255 0.3990586020344083 1 [R{I|L}][PA]AR 6 -1 32.676 0 0 2.6191 0 0 0 580.1739001335156 580.1739001335156 6.706962271689747 0 0 0 0 2 0 0 0 [R{I|L}][PA]AR 2.6191 - 21 NaN NaN 87913.4 NaN 5070 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7290 39.989 NaN 58269 35 0 14503 0.261 + -1 CTYFFFPF 8 22 564.7459435578265 1127.477334182453 2 564.745361328125 MULTI HCD FTMS 0 0 0 7283 11394.1513671875 0.4801321222144063 4 -0.11913299560546875 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))TYFFFPF_ REV__ENST00000435030.1_2:149879593-149879722:+|nuORF 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87890.6 NaN 5071 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7291 39.992 NaN 38413 35 0 4946.4 0.261 + 9036 HPERWMRTL 9 27 613.3160920722474 NaN 0 613.3155517578125 PEAK HCD FTMS 0 0 0 7283 3056.503662109375 0.16839291033003906 5 -0.14233016967773438 8 Unmodified _HPERWMRTL_ ENSG00000169902|ENST00000304842|TPST1 0.9622753412299311 0.2905837902567025 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91437.9 NaN 5072 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7292 39.995 NaN 33425 35 0 3399.9 0.261 + -1 TIVCLIFCL 9 26 569.8038619029455 1137.593170872691 2 569.803955078125 MULTI HCD FTMS 0 0 0 7283 12586.396484375 0.10100620391211414 13 -0.36096954345703125 9 2 Carbamidomethyl (C) _TIVC(Carbamidomethyl (C))LIFC(Carbamidomethyl (C))L_ REV__ENSG00000180481|ENST00000550916|GLIPR1L2;REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2;REV__nc|ENSG00000180481|Q4G1C9-6|GLIPR1L2 2.302733041254933 0.33356062215410776 1 E 1 -1 6.9897 0 0 0.61443 0 0 313.19859187054095 692.3273409479124 1005.5259328184534 0 0 0 0 0 0 0 0 0 E 0.61443 - 1 + NaN NaN 84312.5 NaN 5073 2217 7283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7294 40 NaN 510450 35 0 91266 0.327 + 28985 TYDKGYQF 8 65 511.23574826235716 1020.4569435915143 2 511.23492431640625 MULTI HCD FTMS 0 0 0 7293 286731.625 0.7558183040017609 -1 0.033069610595703125 1 Unmodified _TYDKGYQF_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 61.357469665136826 0.05745689244596827 1 [YT]D[PG]{[HG]|PP}Q{M(Oxidation (M))|F} 9 3 + 58.139 0 0 5.6973 5.6973 89.499 0 0 0 13.807196863200836 13.807196863200836 13.807196863200836 13.807196863200836 0 1.805462187404089 2 0 0.7742275032520141 [YT]D[PG]{[HG]|PP}Q{M(Oxidation (M))|F};[YT]{[QS]|[NT]}[{M(Oxidation (M))|F}T]Q{M(Oxidation (M))|F};[YT]D[PG]{[HG]|PP}GA{M(Oxidation (M))|F};[YT]D{I|L}P{[MG]|[TS]}[QP];[YT]D[PG]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QP];[YT]VEP{[MG]|[TS]}[QP];[Y{I|L}][YN]{[CA]|SS}Q{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[Y{M(Oxidation (M))|F}]{[CA]|SS}Q{M(Oxidation (M))|F};[Y{I|L}][WE][YT]{M(Oxidation (M))|F} 5.6973;4.3443;3.6188;2.6793;2.3593;2.0168;1.6114;1.5546;1.3033 -;-;-;-;-;-;-;-;- 364 + NaN NaN 175459.7 NaN 5074 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7295 40.005 NaN 302400 35 0 67744 0.262 + 19243 NKRLGVCGWIL 11 62 420.24231754259137 NaN 0 420.2345275878906 PEAK HCD FTMS 0 0 0 7293 6700.146484375 1 0 0 2 Unmodified _NKRLGVCGWIL_ ENSG00000133115|ENST00000379631|STOML3;nc|ENSG00000133115|Q8TAV4-2|STOML3 3.072263186857199 0.33340501757296537 1 {I|L} 1 10 10.485 0 0 1.2504 0 0 594.2919490726844 128.0717714899047 722.363720562589 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.2504 + + 15 + NaN NaN 124551.5 NaN 5075 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7296 40.008 NaN 156380 35 0 17873 0.261 + 90 ADKMDMSL 8 38 492.7042814229636 983.3940099127273 2 492.7042541503906 MULTI HCD FTMS 0 0 0 7293 98460.8671875 0.4462386021062137 12 -0.3278999328613281 3 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 41.95555342248728 0.20580824963847894 1 {M(Oxidation (M))|F}S{I|L} 3 5 37.892 0 0 3.8532 0 0 618.2321034162125 0 618.2321034162125 0 24.180964183448438 0 0 0 0.7887254899964358 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.8532 + + 21 NaN NaN 104939.7 NaN 5076 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7297 40.012 NaN 207280 35 0 32502 0.261 + 26083 SPHEESISL 9 35 499.743271076936 997.4719892206721 2 499.7431335449219 MULTI HCD FTMS 0 0 0 7293 115327.09375 0.39116567140496666 -3 0.09270477294921875 4 Unmodified _SPHEESISL_ ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C 32.30548876998284 0.10066689432505688 1 S{I|L}S{I|L} 4 5 45.477 0 0 4.5593 0 0 579.230272361525 0 579.230272361525 0 34.992822134202015 0 0 0 0.805462187404089 0 0.8494850021680094 0 + S{I|L}S{I|L} 4.5593 + + 10 NaN NaN 118020.2 NaN 5077 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7298 40.015 NaN 158330 35 0 24573 0.261 -1 HPDVTEAML 9 49 514.7397132966224 1027.4648736600448 2 514.7392578125 MULTI HCD FTMS 0 0 0 7293 46305.84375 0.5976051824898694 -6 0.17566680908203125 5 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 28.486842064014134 0.11819662193267319 1 A{M(Oxidation (M))|F}{I|L} 3 -1 35.445 0 0 3.4498 0 0 678.2974720685562 0 678.2974720685562 0 31.46591250700361 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F}{I|L} 3.4498 + + 58 NaN NaN 104350.3 NaN 5078 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7299 40.018 NaN 58752 35 0 7512 0.262 -1 0 29 441.7879131732742 881.5612734133484 2 441.7877502441406 MULTI HCD FTMS 0 0 0 7293 11638.4755859375 0.14116010834759962 31 -0.8646240234375 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.9272 0 0 716.5156018819016 0 716.5156018819016 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.9272 - 4 + NaN NaN 82481.8 NaN 5079 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7300 40.022 NaN 25921 35 0 2861.4 0.261 + 35887 YYSHLEGARF 10 20 621.7988683534129 NaN 0 621.7989501953125 PEAK HCD FTMS 0 0 0 7293 22703.45703125 1 0 0 7 Unmodified _YYSHLEGARF_ ENSG00000142207|ENST00000382751|URB1 4.897010918128616 0.3359931263921593 1 {I|L} 1 9 6.9897 0 0 0.56297 0 0 550.218695103507 575.2590426080686 1125.4777377115756 0 0 0 0 0 0 0 0 0 + {I|L} 0.56297 + + 2 + NaN NaN 83800.7 NaN 5080 2218 7293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7302 40.027 NaN 261540 35 0 16915 0.327 + 9326 HPRPLAEPL 9 62 515.2959828017332 1028.5774126702663 2 515.8107299804688 MULTI HCD FTMS 0 0 0 7301 19139.826171875 0.7534183942323261 3 -0.08278274536132812 1 Unmodified _HPRPLAEPL_ ENSG00000106003|ENST00000222725|LFNG;nc|ENSG00000106003|Q8NES3-3|LFNG 18.1463463914782 0.20357593197100715 1 {I|L}GE{I|L}{I|L}KK 7 8 37.44 0 0 3.6399 0 0 229.0623593399162 0 229.0623593399162 0 1.6718164598910974 0 0 0 0 0 0.3494850021680094 0 {I|L}GE{I|L}{I|L}KK 3.6399 - 359 + NaN NaN 119609.4 NaN 5081 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7303 40.031 NaN 193990 35 0 27318 0.261 -1 RYQQWMERF 9 59 453.88009176156794 1358.6184458849038 3 453.88043212890625 MULTI HCD FTMS 0 0 0 7301 76798.4765625 0.6460648145257579 -3 0.08272171020507812 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 21.590151480376914 0.17382222009858564 1 R{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.1922 0 0 1037.438349469278 0 1037.438349469278 0 0.6702408682765792 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1922 + + 30 + NaN NaN 112328.8 NaN 5082 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7304 40.035 NaN 98174 35 0 10628 0.261 + 9459 HPVSREWTL 9 33 562.7957015412279 1123.5768501492557 2 562.7953491210938 MULTI HCD FTMS 0 0 0 7301 31674.580078125 0.03841858001514476 54 -1.5132980346679688 3 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3735188151944 787.3735188151944 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 10 + NaN NaN 89142.9 NaN 5083 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7305 40.038 NaN 64375 35 0 8064 0.261 + 10369 IMEKLTEV 8 32 481.7650269391885 NaN 0 481.750732421875 PEAK HCD FTMS 0 0 0 7301 3378.5205078125 1 0 0 4 Unmodified _IMEKLTEV_ REV__ENSG00000067225|ENST00000335181|PKM;REV__ENST00000564276.1_1_15:72502555-72511438:-|nuORF;REV__nc|ENSG00000067225|P14618-2|PKM 5.760428011301431 0.38822285293237185 1 P 1 -1 5.4846 0 0 0.57041 0 0 147.09662686172356 714.343368318233 861.4399951799567 0 0 0 0 0 0 0 0 0 P 0.57041 - 8 + NaN NaN 88720.9 NaN 5084 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7306 40.042 NaN 54361 35 0 5408.2 0.261 + 32087 VYQWMVYDG 9 35 580.756873986535 1159.4991950398698 2 580.7576293945312 MULTI HCD FTMS 0 0 0 7301 20919.6640625 0.012760991281730093 59 -1.6114540100097656 5 Unmodified _VYQWMVYDG_ ENSG00000171097|ENST00000302586|KYAT1;ENST00000462722.5_1_9:131598322-131644289:-|nuORF;ENST00000483599.5_1_9:131598322-131607768:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;nc|ENSG00000286112|Q16773-3|KYAT1 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F}[C(Carbamidomethyl (C))D] 3 7 10.458 0 0 0.9019 0 0 719.3607044904312 0 719.3607044904312 0 10.45757490560675 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[C(Carbamidomethyl (C))D] 0.9019 - 8 NaN NaN 95359.7 NaN 5085 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7307 40.045 NaN 39255 35 0 10380 0.261 -1 QTLALYQVVC 10 18 597.8152163227822 1193.6158797123644 2 598.3158569335938 MULTI HCD FTMS 0 0 0 7301 13305.2333984375 0.2388565307435223 18 -0.4903144836425781 6 Carbamidomethyl (C) _QTLALYQVVC(Carbamidomethyl (C))_ ENST00000548058.5_2_12:81472048-81503359:+|nuORF 3.2813086475875832 0.45793521633868084 1 Q 1 -1 10.485 0 0 0.87839 0 0 689.3893610129488 373.1513765924438 1062.5407376053927 0 0 0 0 0 0.5 0 0 0 Q 0.87839 + + 1 + NaN NaN 91337.3 NaN 5086 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7308 40.048 NaN 57679 35 0 10692 0.263 + 18633 MYDDIAHS 8 32 476.1981833591701 NaN 0 476.1982727050781 PEAK HCD FTMS 0 0 0 7301 12089.8291015625 0.40488489971760716 -62 1.6765480041503906 7 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 K 1 8 5.4846 0 0 0.57709 0 0 280.063101482209 539.2090548150999 819.2721562973088 0 0 0 0 0 0 0 0 0 K 0.57709 - 7 + NaN NaN 87802.5 NaN 5087 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7309 40.052 NaN 76051 35 0 13072 0.261 + -1 WMSTCEMAM 9 31 553.1951397526066 1104.375726572013 2 553.1952514648438 MULTI HCD FTMS 0 0 0 7301 17172.30078125 0.7134209226757555 -2 0.05954742431640625 8 Oxidation (M) _WMSTCEMAM(Oxidation (M))_ REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF 0.6014990680409731 0.3464572424761564 1 YY 2 -1 7.9588 0 0 0.72066 0 0 463.1128614370505 312.11969934635005 775.2325607834006 0 0 0 0 0 0 0 0 0 YY 0.72066 - 14 + NaN NaN 101051.6 NaN 5088 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7310 40.055 NaN 17124 35 0 3603.8 0.261 -1 QNDVQNRDMP 10 17 616.7684936523438 NaN 0 616.7684936523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _QNDVQNRDM(Oxidation (M))P_ ENSG00000170085|ENST00000429602|SIMC1;nc|ENSG00000170085|Q8NDZ2-2|SIMC1;nc|ENSG00000170085|Q8NDZ2|SIMC1 1.1933415558491238 0.33916295405077446 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108781.3 NaN 5089 2219 7301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7312 40.06 NaN 490680 35 0 64389 0.327 + 11892 KFIDTTSKF 9 70 543.79515636783 1085.57575980246 2 543.795166015625 MULTI HCD FTMS 0 0 0 7311 414336.75 0.04858927120212306 20 -0.5500450134277344 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 150.61878029816774 8.17212585535292E-06 1 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 106.62 0 0 9.8214 9.8214 89.319 0 0 0 76.14638779968487 7.566256728169833 7.566256728169833 1.202475635685147 0 3.274227503252014 0 1.426935982160881 0.3054621874040891 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTYAK;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTS{M(Oxidation (M))|F}K;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}K{M(Oxidation (M))|F};[KS]TT{M(Oxidation (M))|F}D{I|L}K{M(Oxidation (M))|F} 9.8214;9.7106;9.4512;8.4388;7.0529;6.3924;5.1205;5.1141;4.4904;4.3838 +;+;-;-;-;-;-;-;-;- + 1082 + NaN NaN 147886 NaN 5090 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7313 40.064 NaN 555360 35 0 46435 0.261 -1 HPTGKMFIL 9 81 530.2863663466561 1058.5581797601121 2 530.2862548828125 MULTI HCD FTMS 0 0 0 7311 239053.578125 1 0 0 2 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 37.97399986684836 0.07464525285885698 1 HPT 3 -1 37.892 0 0 3.5796 0 0 0 720.3765504889595 720.3765504889595 17.766551459643892 0 0 0 0 0.5 0 0.6694451763165201 0 HPT 3.5796 + + 597 + NaN NaN 166289 NaN 5091 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7314 40.068 NaN 61038 35 0 11167 0.261 + 19950 NYGDQVQHF 9 23 554.246325661905 1106.4780983906098 2 554.24609375 MULTI HCD FTMS 0 0 0 7311 32627.82421875 1 0 0 3 Unmodified _NYGDQVQHF_ ENSG00000154016|ENST00000284154|GRAP 13.042465956692817 0.2476723265019929 1 [YN]G 3 6 34.705 0 0 3.1365 0 0 0 769.3262423150999 769.3262423150999 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 + [YN]G 3.1365 + + 18 + NaN NaN 95321.2 NaN 5092 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7315 40.071 NaN 32332 35 0 5081.7 0.261 -1 KICDSDPAQM 10 24 590.7530080923074 1179.4914632514146 2 590.771728515625 MULTI HCD FTMS 0 0 0 7311 3657.419189453125 0.21161245680253862 7 -0.1932220458984375 4 Carbamidomethyl (C),Oxidation (M) _KIC(Carbamidomethyl (C))DSDPAQM(Oxidation (M))_ ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3 2.498486711656943 0.462078817294651 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7778 0 0 886.3964710919937 0 886.3964710919937 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.7778 + + 1 NaN NaN 88094 NaN 5093 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7316 40.075 NaN 34055 35 0 5524.7 0.263 + 25647 SHETEKPL 8 19 470.7404760111552 939.4663990891104 2 470.74029541015625 MULTI HCD FTMS 0 0 0 7311 9399.4521484375 0.01807039301430462 24 -0.666107177734375 5 Unmodified _SHETEKPL_ REV__ENSG00000166004|ENST00000325212|CEP295;REV__nc|ENSG00000166004|Q9C0D2-3|CEP295 4.75600775471527 0.5349361699807423 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84029 NaN 5094 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7317 40.078 NaN 38235 35 0 4460.7 0.261 + -1 SYCLCRHC 8 30 549.7181566232226 1097.4217603132452 2 550.2166748046875 MULTI HCD FTMS 0 0 0 7311 11395.2158203125 0.6547195384336221 17 -0.45719146728515625 6 2 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))LC(Carbamidomethyl (C))RHC_ REV__ENST00000493792.1_1_2:3482527-3483229:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93240.4 NaN 5095 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7318 40.081 NaN 27777 35 0 4774.2 0.261 + 169 AELDRQIKSF 10 15 603.8273994199169 NaN 0 603.82763671875 PEAK HCD FTMS 0 0 0 7311 13329.8193359375 0.793381488940338 -2 0.059600830078125 7 Unmodified _AELDRQIKSF_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 4.189502756095605 0.3365986553207265 1 SK 2 9 10.969 0 0 0.90982 0 0 165.0759553682422 822.4120565326415 987.4880119008837 0 0 0 0 0 0 0 0 0 SK 0.90982 - 3 + NaN NaN 98087 NaN 5096 2220 7311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7320 40.087 NaN 861470 35 0 95366 0.327 + 34387 YPENGVVQM 9 79 526.7396328430787 1051.4647127529572 2 526.7395629882812 MULTI HCD FTMS 0 0 0 7319 336355.09375 1 0 0 1 Oxidation (M) _YPENGVVQM(Oxidation (M))_ chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1 103.35351024395868 0.004027461563756449 1 [DP]YQGVVQ{M(Oxidation (M))|F} 9 3 + 71.459 0 0 6.7961 6.7961 89.396 0 0 0 11.778259348524358 34.82808907054226 11.778259348524358 9.208187539523749 0 1.9564608101803795 0 1.5273109370204454 1.1549471895720984 [DP]YQGVVQ{M(Oxidation (M))|F};[DP]YQGVV[AG]{M(Oxidation (M))|F} 6.7961;5.9204 -;- 506 NaN NaN 229169.3 NaN 5097 2221 7319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7321 40.091 NaN 240320 35 0 31744 0.261 + 27821 TAYVGSAVM 9 45 457.71807026574356 913.4215875982871 2 457.7179260253906 MULTI HCD FTMS 0 0 0 7319 153861.6875 1 0 0 2 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 81.89019881105858 0.005240739447516426 1 [TA]YSGVAV{M(Oxidation (M))|F} 9 2 + 85.154 0 0 9.3225 9.3225 90.164 0 0 0 5.6424927368725974 68.16434661451873 5.6424927368725974 3.717202730022052 0 2.1861818737241734 0 1.4698565171985376 0 [TA]YSGVAV{M(Oxidation (M))|F};[TA]YVGSAV{M(Oxidation (M))|F};[YT]ASGVAV{M(Oxidation (M))|F};[YT]AVGSAV{M(Oxidation (M))|F};[YT]{[QS]|[NT]}VAV{M(Oxidation (M))|F};[TA]YV{[QS]|[NT]}V{M(Oxidation (M))|F};[YT]AV{[QS]|[NT]}V{M(Oxidation (M))|F};[YT]A[DG][K{I|L}]{M(Oxidation (M))|F};[TA]Y[DG][K{I|L}]{M(Oxidation (M))|F} 9.3225;8.9156;8.6879;8.2809;7.0452;6.7053;6.5802;3.6883;2.6667 -;+;-;-;-;-;-;-;- + 313 NaN NaN 112451.3 NaN 5098 2221 7319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7322 40.095 NaN 111790 35 0 20097 0.261 + 1917 DADAPDPRL 9 27 485.23571105809054 968.4568691829811 2 485.235595703125 MULTI HCD FTMS 0 0 0 7319 37625.44140625 0.5283785660746322 3 -0.0806121826171875 3 Unmodified _DADAPDPRL_ ENSG00000134326|ENST00000256722|CMPK2;nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2;nc|ENSG00000134326|Q5EBM0-4|CMPK2 12.240655878213236 0.2545997876781172 1 {[DA]|[EG]}DA 4 5 26.198 0 0 2.7051 0 0 0 593.3063224292813 593.3063224292813 19.20818753952375 0 0 0 0 1 0 0 0 + {[DA]|[EG]}DA 2.7051 + + 11 NaN NaN 106853.3 NaN 5099 2221 7319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7323 40.098 NaN 86595 35 0 16481 0.261 + 19188 NIEGPDAKL 9 33 478.7560490870676 955.4975452409352 2 478.75604248046875 MULTI HCD FTMS 0 0 0 7319 36955.1953125 0.009098456837369236 32 -0.8977165222167969 4 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 20.41453444215458 0.18397929046831515 1 {[QV]|[N{I|L}]|[RA]|[KV]}EC 4 6 36.682 0 0 3.8391 0 0 0 493.2915570419696 493.2915570419696 18.723637474483468 0 0 0 0 1 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}EC 3.8391 - 21 NaN NaN 92107 NaN 5100 2221 7319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7324 40.101 NaN 60489 35 0 7583.4 0.261 + 3085 EAIEGTYIDK 10 31 569.7849626710569 1137.5553724089136 2 569.78515625 MULTI HCD FTMS 0 0 0 7319 21158.24609375 0.8090452463964587 -2 0.0595855712890625 5 Unmodified _EAIEGTYIDK_ ENSG00000142534|ENST00000270625|RPS11;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 6.1918466704503565 0.44252927588099017 1 {[QN]|[E{I|L}]|[KN]}AEGT{I|L}Y{[QD]|[EN]|[WG]|[KD]|[RS]} 10 4 {[QN]|[E{I|L}]|[KN]}A + + 26.955 10.686 3.4124 2.3696 2.3696 58.991 0 0 0 0 16.26873236385499 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}AEGT{I|L}Y{[QD]|[EN]|[WG]|[KD]|[RS]} 2.3696 - 56 + NaN NaN 107728.7 NaN 5101 2221 7319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7325 40.104 NaN 281770 35 0 67861 0.264 + 170 AELYKTTQALA 11 55 403.55593699972576 1207.6459815993774 3 403.5561828613281 MULTI HCD FTMS 0 0 0 7319 20583.990234375 1 0 0 6 Unmodified _AELYKTTQALA_ REV__ENSG00000205832|ENST00000444310|C16orf96 2.6312355333042263 0.4073809613003177 1 {[CP]|[EA]}{I|L} 3 -1 15.986 0 0 1.3237 0 0 0 891.459585685568 891.459585685568 1.5220444404238993 0 0 0 0 0 0.8538719643217619 0 0 {[CP]|[EA]}{I|L} 1.3237 + + 16 NaN NaN 124236 NaN 5102 2221 7319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7327 40.11 NaN 788690 35 0 141780 0.327 + 16389 LSHEESVSF 9 79 517.7432055229324 1033.4718581126647 2 517.7430419921875 MULTI HCD FTMS 0 0 0 7326 496189.3125 0.6454268960168956 -2 0.04965972900390625 1 Unmodified _LSHEESVSF_ ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1 111.28704002717404 0.0027322905094575235 1 SVDESVS{M(Oxidation (M))|F} 8 3 82.926 0 0 8.024 0 0 165.07872028597643 0 165.07872028597643 0 64.42593794827836 0 0 0 0.8252574989159953 0 2.079689690656103 0 SVDESVS{M(Oxidation (M))|F} 8.024 - 1415 + NaN NaN 202672.9 NaN 5103 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7328 40.114 NaN 301250 35 0 39751 0.261 + 10802 ISTEHDPVL 9 38 505.76143557648055 1009.5083182197611 2 505.76123046875 MULTI HCD FTMS 0 0 0 7326 136316.75 0.4935945040497363 4 -0.11378860473632812 2 Unmodified _ISTEHDPVL_ ENSG00000135999|ENST00000258484|EPC2 32.30548876998284 0.10066689432505688 1 T{I|L}{I|L} 3 7 32.435 0 0 3.213 0 0 664.285448142775 0 664.285448142775 0 24.336068845642203 0 0 0 0 0 0.7742275032520141 0 T{I|L}{I|L} 3.213 - 16 NaN NaN 132351.8 NaN 5104 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7329 40.118 NaN 365520 35 0 38062 0.262 + 11937 KFIWTNHKF 9 90 407.55733180093375 1219.6501660030012 3 407.5573425292969 MULTI HCD FTMS 0 0 0 7326 149779.6875 0.5969319643650443 7 -0.18658065795898438 3 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 57.72198328787511 0.020768266150574023 1 K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F} 9 0 + 67.675 0 0 5.5487 5.5487 85.497 0 0 0 49.71639407645036 12.98332479720628 12.98332479720628 7.073259432077563 0 0.9049471895720984 0 0 0.7302046884880937 + + K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTNHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WTGGHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}W[HQ]SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTGGHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}W[HQ]SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WT{[{M(Oxidation (M))|F}H]|[RQ]}KN;K{M(Oxidation (M))|F}{I|L}W[HQ]{[HG]|PP}[PA];{M(Oxidation (M))|F}K{I|L}W[HQ]{[HG]|PP}[PA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}H]|[RQ]}TWKKN 5.5487;4.9688;4.7938;4.4255;4.2138;3.8456;3.1285;2.7063;2.1263;1.0751 +;-;-;-;-;-;-;-;-;- + 396 + NaN NaN 140104.4 NaN 5105 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7330 40.121 NaN 154240 35 0 12638 0.261 + 21523 PYKVTQDEL 9 50 546.7824344666782 1091.5503160001563 2 547.28466796875 MULTI HCD FTMS 0 0 0 7326 61471.0703125 0.4397066862511681 -4 0.10926055908203125 4 Unmodified _PYKVTQDEL_ ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF 57.107585691075435 0.021627766313179933 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTQDE{I|L} 9 0 + 94.993 0 0 8.7026 8.7026 89.46 0 0 0 3.7628749457997657 3.7628749457997657 3.7628749457997657 3.7628749457997657 0 2.274227503252014 2 0.6382104921644451 0.3807196863200844 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTQDE{I|L};PYDQTVKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTDQE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVT[AG]DE{I|L};PYQDTVKE{I|L};PYD[AG]TVKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTD[AG]E{I|L};PY[AG]DTVKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]DVQE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]DVKE{I|L} 8.7026;8.3579;7.9243;7.859;7.5796;7.5143;7.0808;6.736;6.1985;6.0162 +;-;-;-;-;-;-;-;-;- + 388 NaN NaN 120587 NaN 5106 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7331 40.124 NaN 81227 35 0 14169 0.262 + 16404 LSKILRAKKHK 11 39 441.29743756651453 NaN 0 441.29742431640625 PEAK HCD FTMS 0 0 0 7326 21457.11328125 0.4637951163143551 -46 1.2476577758789062 5 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 1 {M(Oxidation (M))|F} 1 11 3.9794 0 0 0.45191 0 0 414.3480051605697 316.1411532037719 730.4891583643416 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45191 - 8 + NaN NaN 98778.9 NaN 5107 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7332 40.128 NaN 50774 35 0 4282.8 0.261 + 27891 TEEDLDLVTL 10 25 574.2907481779872 1146.5669434227743 2 574.2913208007812 MULTI HCD FTMS 0 0 0 7326 31064.845703125 0.007031597574482904 168 -4.7135772705078125 6 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 10.073929032068715 0.4168838835836452 1 VT{I|L} 3 7 28.188 0 0 2.4584 0 0 815.3578968732437 0 815.3578968732437 0 11.73393743112328 0 0 0 0 0 0.5 0 + VT{I|L} 2.4584 + + 10 NaN NaN 93582.4 NaN 5108 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7333 40.131 NaN 36871 35 0 5853.7 0.261 + 12716 KYAHMINGF 9 21 540.7676411590056 1079.5207293848111 2 540.7679443359375 MULTI HCD FTMS 0 0 0 7326 12433.3427734375 0.6286549081005687 1 -0.029796600341796875 7 Unmodified _KYAHMINGF_ ENSG00000035687|ENST00000366535|ADSS2 6.723162845929126 0.3000504726104499 1 {I|L}[NG]{M(Oxidation (M))|F} 4 5 18.94 0 0 1.7545 0 0 630.2988148419937 0 630.2988148419937 0 14.336068845642203 0 0 0 0.4247425010840047 0 0 0 + {I|L}[NG]{M(Oxidation (M))|F} 1.7545 + + 5 NaN NaN 85595.3 NaN 5109 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7334 40.134 NaN 37342 35 0 8039.6 0.261 + -1 SYNPIVMGNT 10 32 556.2583217080297 1110.5020904828593 2 556.258056640625 MULTI HCD FTMS 0 0 0 7326 15219.47265625 0.14949974832590104 27 -0.7553634643554688 8 Oxidation (M) _SYNPIVM(Oxidation (M))GNT_ REV__ENSG00000159650|ENST00000290868|UROC1;REV__nc|ENSG00000159650|Q96N76-2|UROC1 2.735195868890462 0.4608258780945842 1 {I|L} 1 -1 6.9897 0 0 0.62942 0 0 461.19180103149057 533.2031954400999 994.3949964715905 0 0 0 0 0 0 0 0 0 {I|L} 0.62942 + + 5 + NaN NaN 89189.5 NaN 5110 2222 7326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7336 40.141 NaN 356820 35 0 62120 0.327 + 28986 TYDKGYQF 8 48 511.23574826235716 1020.4569435915143 2 511.23492431640625 MULTI HCD FTMS 0 0 0 7335 170197.21875 0.4486361531325388 4 -0.11376571655273438 1 Unmodified _TYDKGYQF_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 69.10491478415734 0.030728012371919338 1 [YT]D[KG]YQ{M(Oxidation (M))|F} 8 0 + 67.401 0 0 6.605 6.605 89.823 0 0 0 14.213271985608529 34.34115329172698 14.213271985608529 9.262137858390815 0 1.774227503252014 2 0.3807196863200844 0.4247425010840047 + + [YT]D[KG]YQ{M(Oxidation (M))|F};[YT]D[KG]Y[AG]{M(Oxidation (M))|F} 6.605;5.6973 +;- + 135 NaN NaN 151575.7 NaN 5111 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7337 40.145 NaN 288590 35 0 41136 0.261 + -1 LNAMTRGVQI 10 52 559.8031482949362 1117.5917436566724 2 559.8035278320312 MULTI HCD FTMS 0 0 0 7335 37534.46484375 0.3099687715790982 3 -0.08399200439453125 2 Oxidation (M) _LNAM(Oxidation (M))TRGVQI_ REV__nc|ENSG00000243678|P22392-2|NME2 12.240655878213236 0.39661705172222156 1 {[QV]|[N{I|L}]|[RA]|[KV]}HDDVH 7 -1 26.163 0 0 2.341 0 0 0 284.1835765026287 284.1835765026287 1.2809946757377588 0 0 0 0 0.5 0 0 0.3494850021680094 {[QV]|[N{I|L}]|[RA]|[KV]}HDDVH 2.341 - 255 NaN NaN 131737 NaN 5112 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7338 40.149 NaN 113610 35 0 19735 0.261 + 23869 RSPPTQVAI 9 29 484.7799111231104 967.5452693130209 2 484.7797546386719 MULTI HCD FTMS 0 0 0 7335 31771.67578125 0.6735766901385356 -2 0.0529937744140625 3 Unmodified _RSPPTQVAI_ ENSG00000188549|ENST00000397536|CCDC9B;ENST00000382688.8_1_15:40627361-40631125:-|nuORF;ENST00000558912.1_1_15:40629487-40631275:-|nuORF;nc|ENSG00000188549|Q6ZUT6-3|CCDC9B;nc|ENSG00000188549|Q6ZUT6-4|CCDC9B;nc|ENSG00000188549|Q6ZUT6|CCDC9B 5.731851221503515 0.3075653528928475 1 VA{I|L} 3 6 31.198 0 0 3.2244 0 0 666.3420277326187 0 666.3420277326187 0 14.208187539523749 0 0 0 0.5 0 0 0 + VA{I|L} 3.2244 + + 7 NaN NaN 96121.6 NaN 5113 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7339 40.152 NaN 36523 35 0 6152.1 0.261 -1 DLHHRWTM 8 23 556.2583217080297 1110.5020904828593 2 556.2582397460938 MULTI HCD FTMS 0 0 0 7335 9931.103515625 0.09755249145079317 28 -0.7851448059082031 4 Oxidation (M) _DLHHRWTM(Oxidation (M))_ ENSG00000154678|ENST00000396191|PDE1C;nc|ENSG00000154678|Q14123-2|PDE1C;nc|ENSG00000154678|Q14123-3|PDE1C 2.0597508629832335 0.5389364538378849 1 {I|L}[RN][{M(Oxidation (M))|F}T] 5 -1 11.478 0 0 1.0336 0 0 461.1899089416468 0 461.1899089416468 0 11.478174818886373 0 0 0 0.5 0 0 0 {I|L}[RN][{M(Oxidation (M))|F}T] 1.0336 - 4 + NaN NaN 80583.3 NaN 5114 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7340 40.155 NaN 27224 35 0 6008.4 0.261 + 25732 SKNLSTYHYL 10 17 613.3160920722474 NaN 0 613.3165283203125 PEAK HCD FTMS 0 0 0 7335 12816.6162109375 0.7061098375565084 11 -0.30816650390625 5 Unmodified _SKNLSTYHYL_ ENST00000574406.1_1_17:5405270-5405480:-|nuORF 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106320 NaN 5115 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7341 40.159 NaN 58165 35 0 6551.8 0.261 + -1 YNLCMKFPE 9 31 601.2743760967481 NaN 0 601.2591552734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _YNLC(Carbamidomethyl (C))MKFPE_ REV__MUC5AC|p.G4710E|1|0.26|ENSG00000215182|chr11:1192274-1192274|G/A|missense_variant 4.3292370932331545 0.2742679634796037 1 N{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.71497 0 0 277.13665063193395 659.2526949518186 936.3893455837526 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 0.71497 - 11 + NaN NaN 87443 NaN 5116 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7342 40.162 NaN 19666 35 0 4743.7 0.261 + 26397 SSTEVLYVNR 10 15 584.3041742380179 1166.5937955428358 2 584.3045654296875 MULTI HCD FTMS 0 0 0 7335 10205.333984375 0.7713346744624873 -2 0.0529937744140625 7 Unmodified _SSTEVLYVNR_ ENSG00000104142|ENST00000220509|VPS18 5.731851221503515 0.44496410492002586 1 {I|L}Y 2 8 14.776 0 0 1.2666 0 0 503.2245461305295 384.1988619440063 887.4234080745358 0 0 0 0 0 0.3807196863200844 0 0 0 + {I|L}Y 1.2666 + + 3 + NaN NaN 85889.4 NaN 5117 2223 7335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7344 40.167 NaN 289050 35 0 49105 0.327 + 26084 SPHEESISL 9 40 499.743271076936 997.4719892206721 2 499.74310302734375 MULTI HCD FTMS 0 0 0 7343 208566.375 0.7074140469214335 3 -0.08614730834960938 1 Unmodified _SPHEESISL_ ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C 37.97399986684836 0.07464525285885698 1 S{I|L}S{I|L} 4 5 53.047 0 0 5.3182 0 0 579.2287464826187 0 579.2287464826187 0 41.81031895404267 0 0 0 1.2614393726401687 0 0.8494850021680094 0 + S{I|L}S{I|L} 5.3182 + + 27 NaN NaN 126838 NaN 5118 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7345 40.172 NaN 324350 35 0 30541 0.261 + 22225 QMEEDILQL 9 68 559.7727578534009 1117.5309627736017 2 560.2745971679688 MULTI HCD FTMS 0 0 0 7343 49402.3984375 0.6953458339665315 1 -0.0298004150390625 2 Unmodified _QMEEDILQL_ ENSG00000130173|ENST00000252453|ANGPTL8 21.536976647645854 0.1742816388551942 1 VHQ{I|L} 4 7 39.839 0 0 3.5649 0 0 622.2490303145702 0 622.2490303145702 0 27.136153375280188 0 0 0 1.0114393726401687 0 0 0.3807196863200844 VHQ{I|L} 3.5649 - 343 NaN NaN 147397.7 NaN 5119 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7346 40.175 NaN 210670 35 0 28532 0.262 -1 RYQQWMERF 9 63 453.88009176156794 1358.6184458849038 3 453.88031005859375 MULTI HCD FTMS 0 0 0 7343 67316.9921875 0.5663021197647742 2 -0.05637359619140625 3 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 21.590151480376914 0.17382222009858564 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.439473572207 0 1037.439473572207 0 -0.5090746888058106 -0.5090746888058106 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 52 + NaN NaN 108954.1 NaN 5120 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7347 40.178 NaN 107230 35 0 11495 0.261 -1 ADKMDMSL 8 41 492.7042814229636 983.3940099127273 2 492.7042236328125 MULTI HCD FTMS 0 0 0 7343 51575.71484375 0.23374844800702255 18 -0.5093612670898438 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 23.789781309258295 0.41875705117726625 1 {M(Oxidation (M))|F}S{I|L} 3 -1 31.995 0 0 3.2535 0 0 618.2324085919937 0 618.2324085919937 0 19.16386562212267 0 0 0 0.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}S{I|L} 3.2535 + + 14 NaN NaN 99215.7 NaN 5121 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7348 40.182 NaN 146760 35 0 74905 0.261 + -1 VCFMSLPEMFR 11 29 464.5432775988936 1390.6080033968808 3 464.5435791015625 MULTI HCD FTMS 0 0 0 7343 22196.501953125 0.7865108982394976 3 -0.08614730834960938 5 2 Oxidation (M) _VCFM(Oxidation (M))SLPEM(Oxidation (M))FR_ REV__LRRN1|p.A400V|1|0.21|ENSG00000175928|chr3:3845840-3845840|C/T|missense_variant 1.214830529360525 0.41359283248740725 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.3944 0 0 793.350010005223 447.19855676822505 1240.548566773448 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.3944 + + 5 + NaN NaN 100976.3 NaN 5122 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7349 40.185 NaN 58852 35 0 7932.6 0.261 + 2140 DFYLYLTI 8 26 524.2732290989514 1046.5319052647028 2 524.2734375 MULTI HCD FTMS 0 0 0 7343 18326.453125 0.9067399907172432 2 -0.05637359619140625 6 Unmodified _DFYLYLTI_ REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 2.302733041254933 0.5385759549224092 1 T 1 -1 6.9897 0 0 0.66789 0 0 132.11947503655398 810.3380831354124 942.4575581719664 0 0 0 0 0 0 0 0 0 T 0.66789 + + 13 + NaN NaN 97213.8 NaN 5123 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7350 40.188 NaN 34646 35 0 5843.9 0.261 + 28600 TQHHWLGP 8 21 488.24241377419327 NaN 0 488.2428283691406 PEAK HCD FTMS 0 0 0 7343 9395.2568359375 0.30691938750001757 17 -0.4728507995605469 7 Unmodified _TQHHWLGP_ REV__ENSG00000091129|ENST00000379028|NRCAM;REV__nc|ENSG00000091129|Q92823-2|NRCAM;REV__nc|ENSG00000091129|Q92823-3|NRCAM;REV__nc|ENSG00000091129|Q92823-4|NRCAM;REV__nc|ENSG00000091129|Q92823-5|NRCAM;REV__nc|ENSG00000091129|Q92823-6|NRCAM;REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87573.1 NaN 5124 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7351 40.192 NaN 16625 35 0 4417.3 0.261 + -1 LKYFLYCANG 10 15 624.8073120117188 NaN 0 624.8073120117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _LKYFLYC(Carbamidomethyl (C))ANG_ REV__ENST00000392341.5_1_17:80196852-80197050:+|nuORF 1.4819007175156935 0.33891598740166873 1 R 1 -1 10.485 0 0 0.84038 0 0 583.1935051740251 505.2887056940063 1088.4822108680314 0 0 0 0 0 0.5 0 0 0 R 0.84038 - 1 + NaN NaN 99296.8 NaN 5125 2224 7343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7353 40.197 NaN 214010 35 0 24581 0.327 + 20287 NYNDRYDEI 9 49 601.2601170476448 1200.5056811620896 2 601.7827758789062 MULTI HCD FTMS 0 0 0 7352 28762.27734375 0.9676506973671751 -1 0.0298004150390625 1 Unmodified _NYNDRYDEI_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF 28.494509381512117 0.11816142465008336 1 TAEQKYTY 8 8 61.31 0 0 5.107 0 0 198.04124336174783 0 198.04124336174783 0 30.40705219359991 0 0 0 0 0 0.6139829889124311 0.3054621874040891 TAEQKYTY 5.107 - 270 + NaN NaN 115105.5 NaN 5126 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7354 40.201 NaN 83273 35 0 7311.3 0.261 + 9460 HPVSREWTL 9 32 562.7957015412279 1123.5768501492557 2 562.7954711914062 MULTI HCD FTMS 0 0 0 7352 25146.900390625 0.030501058022149197 60 -1.6456565856933594 2 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.37310127572 787.37310127572 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 11 + NaN NaN 102965.8 NaN 5127 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7355 40.205 NaN 51652 35 0 3542.3 0.261 + 204 AETVRYSMCT 10 36 580.756873986535 1159.4991950398698 2 580.756591796875 MULTI HCD FTMS 0 0 0 7352 18286.3125 0.011154647306492427 65 -1.7873077392578125 3 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 2.735195868890462 0.4608258780945842 1 S 1 9 11.99 0 0 1.034 0 0 353.1045184572102 716.3418673150999 1069.4463857723101 0 0 0 0 0 0.5 0 0 0 + S 1.034 + + 4 + NaN NaN 82834.2 NaN 5128 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7356 40.208 NaN 42215 35 0 8703.7 0.261 -1 RYLEKPMEI 9 24 597.8152163227822 1193.6158797123644 2 597.8135375976562 MULTI HCD FTMS 0 0 0 7352 19920.7265625 0.2042386856458864 22 -0.6086235046386719 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 K 1 -1 10.485 0 0 0.87839 0 0 504.22864360379975 558.2675264947874 1062.496170098587 0 0 0 0 0 0.5 0 0 0 K 0.87839 + + 3 + NaN NaN 89972.1 NaN 5129 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7357 40.212 NaN 43937 35 0 11312 0.261 + 327 AGFFTYFVIL 10 27 589.3192665710906 NaN 0 589.302001953125 PEAK HCD FTMS 0 0 0 7352 3195.304443359375 0.3379958787537961 1 -0.02657318115234375 5 Unmodified _AGFFTYFVIL_ ENSG00000132681|ENST00000368081|ATP1A4;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4 1.4819007175156935 0.33891598740166873 1 NS 2 10 7.4743 0 0 0.63523 0 0 605.3508611677686 367.16184412174067 972.5127052895093 0 0 0 0 0 0 0 0 0 NS 0.63523 - 4 + NaN NaN 95627.8 NaN 5130 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7358 40.215 NaN 68599 35 0 9324.7 0.264 + 14790 LIIWCLSKMR 10 36 421.5752409833658 1261.7038935502974 3 421.5750427246094 MULTI HCD FTMS 0 0 0 7352 15368.66796875 0.5717208811907273 -29 0.7996177673339844 6 Unmodified _LIIWCLSKMR_ ENST00000513986.1_1_5:124081915-124082038:-|nuORF 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89939.2 NaN 5131 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7359 40.218 NaN 11865 35 0 2799.1 0.262 -1 MHPWYIPSS 9 12 567.259765625 NaN 0 567.259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _M(Oxidation (M))HPWYIPSS_ ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;nc|ENSG00000068831|Q7LDG7-3|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80911.2 NaN 5132 2225 7352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7361 40.224 NaN 353040 35 0 48769 0.327 + 11893 KFIDTTSKF 9 59 543.79515636783 1085.57575980246 2 543.795166015625 MULTI HCD FTMS 0 0 0 7360 282110.9375 0.03308315000123133 26 -0.7309532165527344 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 128.5786326129116 0.0006911738237826895 1 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 101.62 0 0 9.3612 9.3612 89.945 0 0 0 71.31904331906796 12.627881306118454 12.627881306118454 3.209478339592877 0 3.1549471895720984 0 1.4489700043360187 0 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}K{M(Oxidation (M))|F};[KS]TT{M(Oxidation (M))|F}D{I|L}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}K;[KS]TT{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}K;[KS]TT{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]KE;[KS]TT{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]EK 9.3612;9.0655;8.991;8.0973;4.5744;4.0384;3.6062;3.0702;2.4039;1.8976 +;+;-;-;-;-;-;-;-;- + 484 + NaN NaN 147371.2 NaN 5133 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7362 40.228 NaN 540380 35 0 59353 0.261 + 34388 YPENGVVQM 9 61 526.7396328430787 1051.4647127529572 2 526.7395629882812 MULTI HCD FTMS 0 0 0 7360 160658.359375 0.47764509103706715 5 -0.13470077514648438 2 Oxidation (M) _YPENGVVQM(Oxidation (M))_ chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1 85.64151623876279 0.004640175941193596 1 [DP]Y{[QG]|[NA]}VVQ{M(Oxidation (M))|F} 9 3 + 64.393 0 0 6.1241 6.1241 88.155 0 0 0 7.801697271442535 34.61246852134876 7.801697271442535 9.208187539523749 0 1.805462187404089 0 1.2887254899964358 1.110924374808178 [DP]Y{[QG]|[NA]}VVQ{M(Oxidation (M))|F};[DP]Y{[QG]|[NA]}VV[AG]{M(Oxidation (M))|F} 6.1241;5.2484 -;- 468 NaN NaN 177875.3 NaN 5134 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7363 40.232 NaN 333550 35 0 28817 0.261 + -1 IFMKGTPHI 9 59 530.2863663466561 1058.5581797601121 2 530.2864379882812 MULTI HCD FTMS 0 0 0 7360 153730.953125 0.6430815816721003 6 -0.17117691040039062 3 Oxidation (M) _IFM(Oxidation (M))KGTPHI_ REV__ENSG00000106399|ENST00000223129|RPA3;REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF;REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF 30.636539890814138 0.10832830463492794 1 HPT 3 -1 38.5 0 0 3.637 0 0 0 720.3771456354124 720.3771456354124 4.1806718893866375 0 0 0 0 0.5 0 0.7302046884880937 0 HPT 3.637 - 122 + NaN NaN 135727.2 NaN 5135 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7364 40.235 NaN 132290 35 0 36032 0.261 -1 HPDVTEAML 9 31 514.7397132966224 1027.4648736600448 2 514.7398071289062 MULTI HCD FTMS 0 0 0 7360 66377.328125 0.8566399416343766 2 -0.046268463134765625 4 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 34.10243960390752 0.09241788333544565 1 EA{M(Oxidation (M))|F}{I|L} 4 -1 49.24 0 0 4.7924 0 0 549.2545643537125 0 549.2545643537125 0 49.24024714504206 0 0 0 1.305462187404089 0 0.4247425010840047 0 EA{M(Oxidation (M))|F}{I|L} 4.7924 + + 80 NaN NaN 120967.5 NaN 5136 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7365 40.238 NaN 84862 35 0 9681.4 0.261 -1 IPCSDDCSLM 10 31 550.208311075089 1098.402069216978 2 550.20751953125 MULTI HCD FTMS 0 0 0 7360 35791.3203125 0.2438725627190975 -4 0.11378860473632812 5 Oxidation (M) _IPCSDDCSLM(Oxidation (M))_ ENSG00000118997|ENST00000312428|DNAH7 10.073929032068715 0.4168838835836452 1 {I|L}PC{I|L}AVD 7 -1 49.513 0 0 4.5077 0 0 0 384.03608118228755 384.03608118228755 26.55410404594221 0 0 0 0 2.079689690656103 0 0 0 {I|L}PC{I|L}AVD 4.5077 - 28 + NaN NaN 98842.3 NaN 5137 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7366 40.241 NaN 58723 35 0 11316 0.261 + 18634 MYDDIAHS 8 28 476.1981833591701 NaN 0 476.1989440917969 PEAK HCD FTMS 0 0 0 7360 15863.201171875 0.5312540451746132 -55 1.4671173095703125 6 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 3.4949 0 0 0.36773 0 0 426.22063322049024 406.11106287174067 832.3316960922309 0 0 0 0 0 0 0 0 0 + D 0.36773 + + 2 + NaN NaN 104226.5 NaN 5138 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7367 40.245 NaN 32758 35 0 5320.7 0.261 -1 YNIPYGAYM 9 22 554.246325661905 1106.4780983906098 2 554.747802734375 MULTI HCD FTMS 0 0 0 7360 6497.0556640625 0.33519215173996003 4 -0.10485076904296875 7 Oxidation (M) _YNIPYGAYM(Oxidation (M))_ tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3994 0 0 941.4323047888505 0 941.4323047888505 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3994 + + 2 + NaN NaN 99435.7 NaN 5139 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7368 40.248 NaN 27621 35 0 7597.2 0.261 + -1 MLCCACWFF 9 11 619.235949485274 1236.4573460373479 2 619.7379760742188 MULTI HCD FTMS 0 0 0 7360 16196.2646484375 0.20931603267561344 -11 0.3157539367675781 8 2 Carbamidomethyl (C) _MLC(Carbamidomethyl (C))C(Carbamidomethyl (C))ACWFF_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF;REV__nc|ENSG00000123843|P20851-2|C4BPB 0.6014990680409731 0.3464572424761564 1 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.3394869440061 1005.3394869440061 20.969100130080562 0 0 0 0 0 0 0 0 MP 1.6959 - 1 + NaN NaN 85613.9 NaN 5140 2226 7360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7370 40.253 NaN 631420 35 0 112640 0.327 + 16390 LSHEESVSF 9 63 517.7432055229324 1033.4718581126647 2 517.7431030273438 MULTI HCD FTMS 0 0 0 7369 434648.34375 0.5653764083551218 3 -0.07507705688476562 1 Unmodified _LSHEESVSF_ ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1 99.79894945604345 0.0042691968066200965 1 SVDESVS{M(Oxidation (M))|F} 8 3 77.486 0 0 7.4976 0 0 165.07920327762162 0 165.07920327762162 0 66.68366291575822 0 0 0 0.805462187404089 0 1.555462187404089 0 SVDESVS{M(Oxidation (M))|F} 7.4976 - 1049 + NaN NaN 189303.4 NaN 5141 2227 7369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7371 40.258 NaN 122240 35 0 15794 0.261 + 27711 TASADGTIKL 10 40 488.7691724277991 975.5237919223982 2 488.7691650390625 MULTI HCD FTMS 0 0 0 7369 49982.9453125 0.6293096104955871 -4 0.11376571655273438 2 Unmodified _TASADGTIKL_ ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF 20.580933911654288 0.31860490502175054 1 DAS[PG] 5 7 21.198 0 0 2.173 0 0 530.3437367169937 0 530.3437367169937 0 -2.5134875797167666 -2.5134875797167666 0 0 0.5 0 0 0 DAS[PG] 2.173 - 19 NaN NaN 130635.9 NaN 5142 2227 7369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7372 40.261 NaN 137000 35 0 13964 0.261 + -1 KGFCCLII 8 34 505.76143557648055 1009.5083182197611 2 505.7613830566406 MULTI HCD FTMS 0 0 0 7369 29539.865234375 0.10696202139544389 9 -0.24404525756835938 3 2 Carbamidomethyl (C) _KGFC(Carbamidomethyl (C))C(Carbamidomethyl (C))LII_ REV__ENST00000281950.7_1_2:39009112-39009190:+|nuORF 2.302733041254933 0.5385759549224092 1 {I|L}{I|L} 2 -1 20.969 0 0 2.0772 0 0 765.327928611525 0 765.327928611525 0 7.870156338638594 0 0 0 0 0 0 0 {I|L}{I|L} 2.0772 + + 3 NaN NaN 116880.9 NaN 5143 2227 7369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7373 40.265 NaN 84264 35 0 17350 0.261 + 19189 NIEGPDAKL 9 34 478.7560490870676 955.4975452409352 2 478.7559814453125 MULTI HCD FTMS 0 0 0 7369 40543.91796875 0.009982008876888165 38 -1.0561103820800781 4 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 17.11289562659939 0.2125047172822487 1 {[QV]|[N{I|L}]|[RA]|[KV]}E 3 6 43.952 0 0 4.6 0 0 0 596.3066500299436 596.3066500299436 43.95242492728684 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 + {[QV]|[N{I|L}]|[RA]|[KV]}E 4.6 + + 7 + NaN NaN 96436 NaN 5144 2227 7369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7375 40.27 NaN 232870 35 0 19114 0.327 + 21524 PYKVTQDEL 9 62 546.7824344666782 1091.5503160001563 2 546.7821044921875 MULTI HCD FTMS 0 0 0 7374 155427 0.6336310351891543 2 -0.058582305908203125 1 Unmodified _PYKVTQDEL_ ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF 79.42699986076722 0.0060377907040421955 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTQDE{I|L} 9 0 + 101.23 0 0 9.274 9.274 93.252 0 0 0 25.642492736872583 63.2711911123815 25.642492736872583 9.208187539523749 0 2.368415180652539 2 0.5941876774005248 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTQDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVT[AG]DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]DVQE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]DVKE{I|L};PYKVD[QT]E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]DV[AG]E{I|L};PYKVTHH[NP];[VP][YK]TQDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]{[QV]|[N{I|L}]|[RA]|[KV]}DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]DV{[SA]|[TG]}V{I|L} 9.274;8.4304;6.1054;5.6586;5.5013;5.2618;4.9936;4.7879;4.6476;4.5714 +;-;-;-;-;-;-;-;-;- + 572 NaN NaN 129782.8 NaN 5145 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7376 40.274 NaN 181910 35 0 30133 0.261 + 28987 TYDKGYQF 8 43 511.23574826235716 1020.4569435915143 2 511.2348327636719 MULTI HCD FTMS 0 0 0 7374 103184.7734375 0.2719928102047941 9 -0.24747467041015625 2 Unmodified _TYDKGYQF_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 52.268347100219714 0.11372384022409306 1 [YT]D{I|L} 4 5 40.93 0 0 4.0109 0 0 0 525.217034657548 525.217034657548 6.906140654642812 0 0 0 0 0.9247425010840047 2 0 0 [YT]D{I|L} 4.0109 - 79 NaN NaN 104328.3 NaN 5146 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7377 40.278 NaN 216370 35 0 22323 0.262 + 5538 FLERLYSFF 9 55 407.8798705239172 NaN 0 407.8918151855469 PEAK HCD FTMS 0 0 0 7374 2171.86279296875 0.3772843196854544 -5 0.13026046752929688 3 Unmodified _FLERLYSFF_ REV__ENSG00000198887|ENST00000361138|SMC5;REV__SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant 16.149105407346934 0.21324626030841579 1 {I|L} 1 -1 6.9897 0 0 0.85895 0 0 581.5876238829923 116.05045496158436 697.6380788445766 0 0 0 0 0 0 0 0 0 {I|L} 0.85895 + + 26 + NaN NaN 120401.3 NaN 5147 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7378 40.281 NaN 163190 35 0 12674 0.261 + 502 ANAYTIPSHF 10 59 560.7764879846692 NaN 0 560.7656860351562 PEAK HCD FTMS 0 0 0 7374 5993.0068359375 0.30283510839728467 4 -0.124908447265625 4 Unmodified _ANAYTIPSHF_ STPG1|p.D119H|1|0.21|ENSG00000001460|chr1:24379760-24379760|C/G|missense_variant 8.745405648335112 0.33269943387702366 1 VH{M(Oxidation (M))|F}VT 5 9 21.414 0 0 1.9128 0 0 234.12297959175322 299.11460291080317 533.2375825025564 0 0 0 0 0 0.4247425010840047 0 0 0 VH{M(Oxidation (M))|F}VT 1.9128 - 103 + NaN NaN 107494.6 NaN 5148 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7379 40.284 NaN 400400 35 0 94399 0.261 -1 NAFKEITTM 9 43 535.7628626719894 1069.5111724107787 2 535.762939453125 MULTI HCD FTMS 0 0 0 7374 41412.61328125 0.024049880335294923 47 -1.3197746276855469 5 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 32.037481411007896 0.10189719824197178 1 {[QG]|[NA]}{M(Oxidation (M))|F}K{[QN]|[E{I|L}]|[KN]}TT{M(Oxidation (M))|F} 9 -1 + 45.212 0 0 4.2274 4.2274 89.65 0 0 0 26.62848732905715 13.727496652734246 13.727496652734246 45.2119811855394 0 2.110924374808178 0 0 0 {[QG]|[NA]}{M(Oxidation (M))|F}K{[QN]|[E{I|L}]|[KN]}TT{M(Oxidation (M))|F} 4.2274 + + 52 + NaN NaN 144547.6 NaN 5149 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7380 40.288 NaN 28029 35 0 3830.9 0.261 + -1 IMHVEEMLF 9 24 590.7729383668844 1179.5313238005688 2 590.7730712890625 MULTI HCD FTMS 0 0 0 7374 16736.24609375 0.5042793037203978 1 -0.026523590087890625 6 2 Oxidation (M) _IM(Oxidation (M))HVEEM(Oxidation (M))LF_ REV__ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;REV__ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;REV__ENSG00000114770|ENST00000334444|ABCC5;REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF;REV__nc|ENSG00000114770|O15440-5|ABCC5 2.0597508629832335 0.3354026079994024 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7777 0 0 886.38774306465 0 886.38774306465 0 13.979400086720375 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.7777 - 2 NaN NaN 104759 NaN 5150 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7381 40.291 NaN 84098 35 0 20941 0.264 -1 QTLQKERANSM 11 30 441.22277337393285 1320.6464907219986 3 441.2223815917969 MULTI HCD FTMS 0 0 0 7374 3307.377197265625 0.10345227134991948 6 -0.17790603637695312 7 Oxidation (M) _QTLQKERANSM(Oxidation (M))_ ENSG00000196678|ENST00000357967|ERI2;ENST00000568805.5_1_16:20809048-20811281:-|nuORF;nc|ENSG00000196678|A8K979-2|ERI2 0.5059551277355931 0.4167017191902429 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1058 0 0 1155.6007428966063 0 1155.6007428966063 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1058 + + 1 + NaN NaN 104787.5 NaN 5151 2228 7374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7383 40.296 NaN 50240 35 0 6561.8 0.327 + 21922 QEAGIKTAF 9 29 482.75792477204976 963.5012966108995 2 482.7584533691406 MULTI HCD FTMS 0 0 0 7382 13029.3427734375 0.4189275392298103 1 -0.0320587158203125 1 Unmodified _QEAGIKTAF_ ENSG00000128050|ENST00000512576|PAICS 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.7633 0 0 798.422482989609 0 798.422482989609 0 16.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7633 + + 5 + NaN NaN 108747.5 NaN 5152 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7384 40.301 NaN 161850 35 0 18518 0.261 -1 LGQTELCSC 9 38 505.7176328502076 1009.4207127672153 2 505.7174072265625 MULTI HCD FTMS 0 0 0 7382 14301.4736328125 0.40384104169840196 -6 0.1567840576171875 2 Carbamidomethyl (C) _LGQTELC(Carbamidomethyl (C))SC_ ENST00000604509.5_1_10:122659587-122664224:+|nuORF 3.944395688203298 0.32111559684428237 1 {I|L} 1 -1 6.9897 0 0 0.69245 0 0 131.0117905033465 762.3062838190061 893.3180743223527 0 0 0 0 0 0 0 0 0 {I|L} 0.69245 + + 2 + NaN NaN 117419.2 NaN 5153 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7385 40.304 NaN 77598 35 0 13940 0.261 + 2710 DVKDLHQD 8 40 485.23571105809054 968.4568691829811 2 485.2482604980469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _DVKDLHQD_ ENST00000470960.1_1_12:107262187-107268295:+|nuORF;nc|ENSG00000111785|Q9NVN3-1|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B 4.75600775471527 0.5349361699807423 1 [DV]S 3 6 22.676 0 0 2.3415 0 0 0 664.3061178004217 664.3061178004217 7.4595372608497 0 0 0 0 0 2 0 0 [DV]S 2.3415 - 54 NaN NaN 102073.8 NaN 5154 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7386 40.313 NaN 73650 35 0 16481 0.261 + 17208 LYNGKLIE 8 32 475.2715220239656 948.5284911147312 2 475.2713623046875 MULTI HCD FTMS 0 0 0 7382 19193.484375 0.5300606682766339 -1 0.026523590087890625 4 Unmodified _LYNGKLIE_ tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1 16.942295170755138 0.46913822049235215 1 {I|L}Y 2 6 42.206 0 0 4.4497 0 0 0 669.3575125731539 669.3575125731539 35.21652514092061 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 4.4497 + + 10 + NaN NaN 117242.1 NaN 5155 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7387 40.317 NaN 23880 35 0 5940.8 0.261 + -1 VCVCHIPL 8 14 470.7404760111552 939.4663990891104 2 470.7400817871094 MULTI HCD FTMS 0 0 0 7382 14489.033203125 0.027855083492424743 33 -0.9137916564941406 5 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VCHIPL_ REV__ENSG00000144426|ENST00000683969|NBEAL1;REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1;REV__nc|ENSG00000144426|Q6ZS30|NBEAL1 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87809.6 NaN 5156 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7388 40.32 NaN 21364 35 0 3373.3 0.261 + 20541 PDYYNEDLN 9 21 571.7375124734626 NaN 0 571.7369995117188 PEAK HCD FTMS 0 0 0 7382 6776.60205078125 0.6554225005102748 -2 0.043018341064453125 6 Unmodified _PDYYNEDLN_ REV__ENSG00000130635|ENST00000371817|COL5A1;REV__nc|ENSG00000130635|P20908-2|COL5A1 3.5964929083625545 0.27781873954207675 1 Y 1 -1 11.99 0 0 1.0504 0 0 603.252111273294 372.1235750787719 975.3756863520659 0 0 0 0 0 0.5 0 0 0 Y 1.0504 + + 2 + NaN NaN 87332.9 NaN 5157 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7389 40.323 NaN 35980 35 0 6373.4 0.261 -1 QADFLDKQM 9 29 556.2583217080297 1110.5020904828593 2 556.2581176757812 MULTI HCD FTMS 0 0 0 7382 8616.7255859375 0.08464145477221902 34 -0.9468879699707031 7 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 1.6526216038709556 0.33848895094777925 1 D 1 -1 5.4846 0 0 0.49388 0 0 574.2760905822719 418.1755770318969 992.4516676141689 0 0 0 0 0 0 0 0 0 D 0.49388 + + 2 + NaN NaN 78597.4 NaN 5158 2229 7382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7391 40.328 NaN 365950 35 0 47205 0.327 + 25570 SFSLRCISE 9 53 521.2556575639986 NaN 0 521.2677001953125 PEAK HCD FTMS 0 0 0 7390 6087.80712890625 0.45488545580490763 -2 0.058582305908203125 1 Unmodified _SFSLRCISE_ TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant 19.256988751693697 0.19238547928067054 1 C{I|L}MKS{I|L} 6 7 31.208 0 0 2.9993 0 0 131.0708230053654 231.07741724185783 362.14824024722327 0 0 0 0 0 0 0 1.110924374808178 0 C{I|L}MKS{I|L} 2.9993 - 142 + NaN NaN 142627.7 NaN 5159 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7392 40.333 NaN 108620 35 0 17429 0.261 -1 RYQQWMERF 9 47 453.88009176156794 1358.6184458849038 3 453.8802490234375 MULTI HCD FTMS 0 0 0 7390 37422.15625 0.3148127348220819 8 -0.21875381469726562 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 16.565877749689598 0.21723083036893404 1 R{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.1922 0 0 1037.4381997676853 0 1037.4381997676853 0 0.7133375178436552 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1922 + + 23 + NaN NaN 91553 NaN 5160 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7393 40.336 NaN 125360 35 0 10139 0.261 -1 ADKMDMSL 8 39 492.7042814229636 983.3940099127273 2 492.7044372558594 MULTI HCD FTMS 0 0 0 7390 50848.171875 0.23045112017901392 24 -0.6834144592285156 3 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 10.073929032068715 0.5196730168178844 1 S{I|L} 2 -1 22.206 0 0 2.2581 0 0 765.2671035901619 0 765.2671035901619 0 6.008337601396857 0 0 0 0.4247425010840047 0 0 0 S{I|L} 2.2581 + + 11 NaN NaN 97400.6 NaN 5161 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7394 40.34 NaN 82655 35 0 22853 0.261 + -1 MCCASLLCPCH 11 20 619.235949485274 1236.4573460373479 2 619.2362670898438 MULTI HCD FTMS 0 0 0 7390 55096.15234375 0.5009974757278657 -10 0.2682991027832031 4 Carbamidomethyl (C) _MC(Carbamidomethyl (C))CASLLCPCH_ REV__ENST00000556188.5_2_14:101010291-101035842:-|nuORF 3.2813086475875832 0.40452996145431686 1 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.3412032288788 1005.3412032288788 20.969100130080562 0 0 0 0 0 0 0 0 MP 1.6959 - 1 + NaN NaN 116787.7 NaN 5162 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7395 40.343 NaN 109570 35 0 36897 0.261 -1 LRRAAMMVGS 10 16 575.2979747647504 1148.5813965963007 2 575.2981567382812 MULTI HCD FTMS 0 0 0 7390 68012.03125 1 0 0 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LRRAAMM(Oxidation (M))VGS_ ENST00000531964.5_1_15:101812984-101817507:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106705.9 NaN 5163 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7396 40.346 NaN 88692 35 0 16285 0.263 + -1 KPDNECQGEQL 11 38 439.8630075461556 1316.5671932386667 3 439.8630676269531 MULTI HCD FTMS 0 0 0 7390 16919.373046875 0.3343137693037442 -6 0.161224365234375 6 Carbamidomethyl (C) _KPDNEC(Carbamidomethyl (C))QGEQL_ REV__BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;REV__BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;REV__BRCA2|p.S727Gfs*5|1|0.11|ENSG00000139618|chr13:32336533-32336534|-/GGTTC|frameshift_variant;REV__BRCA2|p.Y839Ifs*42|1|0.11|ENSG00000139618|chr13:32336864-32336865|-/A|frameshift_variant;REV__ENSG00000139618|ENST00000380152|BRCA2 2.2527281973983926 0.4090409658946738 1 {I|L} 1 -1 20.485 0 0 1.5559 0 0 1185.4722968537042 0 1185.4722968537042 0 20.48455006504028 0 0 0 0.5 0 0 0 {I|L} 1.5559 + + 11 + NaN NaN 112318.9 NaN 5164 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7397 40.35 NaN 44086 35 0 5719.2 0.261 + 19576 NTAFSTASSL 10 24 499.743271076936 997.4719892206721 2 499.7432861328125 MULTI HCD FTMS 0 0 0 7390 20999.005859375 0.07122428874888084 9 -0.2519035339355469 7 Unmodified _NTAFSTASSL_ REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1 11.494710602746466 0.4035943721457025 1 S{I|L} 2 -1 25.969 0 0 2.6035 0 0 779.3443932268141 0 779.3443932268141 0 21.989700043360187 0 0 0 0.5 0 0 0 S{I|L} 2.6035 + + 7 NaN NaN 104255.2 NaN 5165 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7398 40.353 NaN 57936 35 0 8295.5 0.262 + -1 KVAVGKAM 8 39 410.2397192216968 NaN 0 410.2397766113281 PEAK HCD FTMS 0 0 0 7390 2663.296630859375 0.18209850556161092 1 -0.029850006103515625 8 Oxidation (M) _KVAVGKAM(Oxidation (M))_ REV__ENSG00000133315|ENST00000255681|MACROD1;REV__ENST00000538595.1_1_11:63916459-63933466:-|nuORF;REV__ENST00000542359.5_1_11:63776517-63933244:-|nuORF;REV__ENST00000545464.5_1_11:63767582-63933466:-|nuORF;REV__MACROD1-BAD|1|fusion;REV__MACROD1-TCN1|1|fusion 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91396.8 NaN 5166 2230 7390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7400 40.358 NaN 397240 35 0 48727 0.327 + 3332 EELEQKYTY 9 63 601.7827130673791 1201.550873201558 2 601.7825927734375 MULTI HCD FTMS 0 0 0 7399 256746.25 0.7863794336185946 3 -0.08947372436523438 1 Unmodified _EELEQKYTY_ ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 121.34585337138759 0.001129813327125052 1 TAEQKYTY 8 3 91.267 0 0 7.5958 0 0 199.0848279219013 0 199.0848279219013 0 71.88161603087728 0 0 0 2.329689690656103 0 1.4049471895720984 0.3054621874040891 TAEQKYTY 7.5958 - 1036 + NaN NaN 158651 NaN 5167 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7401 40.363 NaN 477130 35 0 84308 0.262 + 8983 HPEDVEPAL 9 61 503.7457654166428 1005.4769779000857 2 503.74517822265625 MULTI HCD FTMS 0 0 0 7399 110972.15625 0.8176479906646853 -2 0.061908721923828125 2 Unmodified _HPEDVEPAL_ ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF 20.453626601364224 0.18364154288633264 1 EPA{I|L} 4 5 44.24 0 0 4.3999 0 0 577.2516346662125 0 577.2516346662125 0 33.2711470149615 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + EPA{I|L} 4.3999 + + 21 NaN NaN 154539.5 NaN 5168 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7402 40.366 NaN 268080 35 0 44333 0.261 + 23619 RPNSIDPAL 9 35 491.7696238035828 981.5246946739657 2 491.7691650390625 MULTI HCD FTMS 0 0 0 7399 131167.9375 0.261573714589116 -4 0.10492706298828125 3 Unmodified _RPNSIDPAL_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 23.789781309258295 0.1548179064208189 1 [PA]D[RK]DPA{I|L} 9 4 + 49.671 0 0 5.0606 5.0606 91.173 0 0 0 3.9254497678533085 41.47099695308839 3.9254497678533085 49.67084689121528 0 1 0 0.3807196863200844 0 [PA]D[RK]DPA{I|L} 5.0606 - 31 NaN NaN 125208.4 NaN 5169 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7403 40.37 NaN 121280 35 0 23629 0.261 + 21375 PTTAVATVSI 10 45 480.2743181306406 958.5340833280812 2 480.2740783691406 MULTI HCD FTMS 0 0 0 7399 57912.00390625 0.3646240289136031 -4 0.10492706298828125 4 Unmodified _PTTAVATVSI_ ENSG00000105392|ENST00000221996|CRX 49.93300154707207 0.07803319134556608 1 {[TV]|[{I|L}S]}[VG]{[RE]|[WV]}VS 8 6 35.965 0 0 3.752 0 0 0 128.07092052611168 128.07092052611168 -2.236519031261537 0 -2.236519031261537 0 0 0.8807196863200843 1.5228787452803376 1.1549471895720984 0 {[TV]|[{I|L}S]}[VG]{[RE]|[WV]}VS 3.752 - 68 NaN NaN 116530.7 NaN 5170 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7404 40.373 NaN 34275 35 0 3509.8 0.261 + 33163 YEQDQKYSF 9 29 604.2671660995159 1206.5197792658316 2 604.266357421875 MULTI HCD FTMS 0 0 0 7399 26449.728515625 0.8024304606260259 -1 0.029850006103515625 5 Unmodified _YEQDQKYSF_ ENSG00000115414|ENST00000354785|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-2|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1 24.881564428377168 0.14538514251145815 1 [YE]QDQKYS{M(Oxidation (M))|F} 9 0 + 34.516 0 0 2.8608 2.8608 88.037 0 0 0 4.070677831939314 3.261518613495518 3.261518613495518 34.5159904256633 0 1.7914478256039672 2 0 0 + + [YE]QDQKYS{M(Oxidation (M))|F} 2.8608 + + 16 + NaN NaN 94799.9 NaN 5171 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7405 40.376 NaN 67740 35 0 15832 0.262 + 14381 LEEVQQEL 8 38 494.25318554266823 986.4918181521365 2 494.25274658203125 MULTI HCD FTMS 0 0 0 7399 27109.5546875 0.5693135936501119 3 -0.08947372436523438 6 Unmodified _LEEVQQEL_ REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF 4.3292370932331545 0.5355693454741696 1 {[QS]|[NT]}V 3 -1 2.9318 0 0 0.2972 0 0 0 669.3092064180146 669.3092064180146 0.45757490560674974 0 0 0 0 0 0 0 0 {[QS]|[NT]}V 0.2972 - 12 NaN NaN 102711.5 NaN 5172 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7406 40.38 NaN 76062 35 0 7956.9 0.261 + 9632 HTQGPVDGSLY 11 39 587.2803325595901 1172.54611218598 2 587.7645263671875 MULTI HCD FTMS 0 0 0 7399 7672.41162109375 0.43466853807448885 1 -0.03647613525390625 7 Unmodified _HTQGPVDGSLY_ ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 4.5288652416199255 0.3990586020344083 1 CS[YT]V 5 10 12.218 0 0 1.042 0 0 263.1435658054077 353.1472262018188 616.2907920072265 0 0 0 0 0 0 0 0 0 CS[YT]V 1.042 - 26 + NaN NaN 103376 NaN 5173 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7407 40.383 NaN 42288 35 0 11998 0.261 -1 RYLEKPMEI 9 17 597.8152163227822 1193.6158797123644 2 597.8138427734375 MULTI HCD FTMS 0 0 0 7399 16806.2421875 0.17230720999318205 28 -0.7760543823242188 8 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 1 K 1 -1 11.99 0 0 1.0045 0 0 504.2270710938939 558.2670382135374 1062.4941093074312 0 0 0 0 0 0.5 0 0 0 K 1.0045 + + 1 + NaN NaN 83068.5 NaN 5174 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7408 40.386 NaN 31681 35 0 5350.1 0.261 + -1 LEMKRRPC 8 20 553.2853389351495 1104.556124937099 2 553.2666015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C),Oxidation (M) _LEM(Oxidation (M))KRRPC(Carbamidomethyl (C))_ REV__ENST00000445466.2_1_3:151986600-151987317:-|nuORF 2.302733041254933 0.5385759549224092 1 D 1 -1 5.4846 0 0 0.49654 0 0 455.2808696654177 531.2267550104124 986.5076246758301 0 0 0 0 0 0 0 0 0 D 0.49654 - 1 + NaN NaN 87122.3 NaN 5175 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7409 40.39 NaN 30552 35 0 8559.2 0.261 + -1 EHNRWLCP 8 24 556.2583217080297 1110.5020904828593 2 556.2596435546875 MULTI HCD FTMS 0 0 0 7399 8498.0234375 0.08347545239368966 36 -1.0106277465820312 10 Carbamidomethyl (C) _EHNRWLC(Carbamidomethyl (C))P_ REV__nc|ENSG00000197142|Q9ULC5-3|ACSL5 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92041.5 NaN 5176 2231 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7411 40.395 NaN 314550 35 0 41270 0.327 + -1 QHVILDSKM 9 62 543.7831691918867 1085.5517854505733 2 543.795166015625 MULTI HCD FTMS 0 0 0 7410 21015.62890625 1 0 0 1 Oxidation (M) _QHVILDSKM(Oxidation (M))_ REV__ENSG00000197619|ENST00000598071|ZNF615;REV__nc|ENSG00000197619|Q8N8J6-3|ZNF615;REV__nc|ENSG00000197619|Q8N8J6|ZNF615 36.12702656103203 0.08312389501731911 1 KSTTD{I|L}KE 8 -1 65.227 0 0 6.0086 0 0 165.05480159618406 0 165.05480159618406 0 19.85863111416478 0 0 0 0.1307196863200844 0 1.5114393726401687 1.916386562212267 KSTTD{I|L}KE 6.0086 - 405 + NaN NaN 131163.1 NaN 5177 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7412 40.399 NaN 220130 35 0 22204 0.261 + -1 IFMKGTPHI 9 52 530.2863663466561 1058.5581797601121 2 530.2864990234375 MULTI HCD FTMS 0 0 0 7410 85825.046875 0.3590201307512849 12 -0.33148193359375 2 Oxidation (M) _IFM(Oxidation (M))KGTPHI_ REV__ENSG00000106399|ENST00000223129|RPA3;REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF;REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 1 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3765352838499 720.3765352838499 18.762874945799762 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 - 27 + NaN NaN 121161.5 NaN 5178 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7413 40.403 NaN 130830 35 0 13392 0.261 -1 IPCSDDCSLM 10 49 550.208311075089 1098.402069216978 2 550.2088012695312 MULTI HCD FTMS 0 0 0 7410 83574.3515625 0.5694534628837237 2 -0.052997589111328125 3 Oxidation (M) _IPCSDDCSLM(Oxidation (M))_ ENSG00000118997|ENST00000312428|DNAH7 14.838274106304384 0.3723198072575719 1 {I|L}PTDAVD 7 -1 77.511 0 0 7.0567 0 0 0 384.03620325260005 384.03620325260005 57.02639179909973 0 0 0 0 2.2302046884880937 0 1.0752574989159953 0 {I|L}PTDAVD 7.0567 - 71 + NaN NaN 107272.4 NaN 5179 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7414 40.406 NaN 373990 35 0 47233 0.261 + 34405 YPESESIMM 9 59 559.722735449113 1117.4309179650259 2 559.72265625 MULTI HCD FTMS 0 0 0 7410 154986.5 0.4569291557157649 -5 0.1414031982421875 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 71.13359017698441 0.008721403657255008 1 YS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 63.443 0 0 5.6776 0 0 442.16990859199376 0 442.16990859199376 0 52.95880017344075 0 0 0 2 0 0.8494850021680094 0 YS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6776 - 264 NaN NaN 141739.2 NaN 5180 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7415 40.409 NaN 73050 35 0 18673 0.261 -1 HPDVTEAML 9 28 514.7397132966224 1027.4648736600448 2 514.7394409179688 MULTI HCD FTMS 0 0 0 7410 26719.11328125 0.3448264684391783 8 -0.21541976928710938 5 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.5275 0 0 749.3350374490445 0 749.3350374490445 0 25.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.5275 + + 3 NaN NaN 94273.8 NaN 5181 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7416 40.413 NaN 317800 35 0 80185 0.261 + 13874 KYQAVTATL 9 33 497.7821702862789 993.5497876393579 2 497.7821350097656 MULTI HCD FTMS 0 0 0 7410 120099.234375 0.3646914948584453 -4 0.124908447265625 6 Unmodified _KYQAVTATL_ ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 60.07390631473393 0.0174780869009295 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG]{[VA]|[{I|L}G]}TAT{I|L} 10 3 + 56.642 0 0 5.701 5.701 91.932 0 0 0 10.456349637772746 29.986512420283233 10.456349637772746 40.778324880759484 0 1.8494850021680094 1.3979400086720375 0 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG]{[VA]|[{I|L}G]}TAT{I|L};[{I|L}T]AT{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]}SK;[TA]{I|L}T{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]}SK;[{I|L}T]AT{[VA]|[{I|L}G]}[YQ]K;[TA]{I|L}T{[VA]|[{I|L}G]}[YQ]K;[TA]{I|L}[{M(Oxidation (M))|F}E][KA]SK;[{I|L}T]A[{M(Oxidation (M))|F}E][KA]SK;[{I|L}T]AT{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K;[TA]{I|L}T{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K;[TA]T{I|L}{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]}SK 5.701;1.5967;1.5967;1.2422;1.2422;1.1164;1.1164;1.0189;1.0189;0.9907 -;-;-;-;-;-;-;-;-;- 224 NaN NaN 145689.9 NaN 5182 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7417 40.416 NaN 53334 35 0 7124.9 0.261 -1 AAGVGDMVM 9 30 441.6885593917565 881.362565850313 2 441.68841552734375 MULTI HCD FTMS 0 0 0 7410 10431.3310546875 0.2995566082881321 -13 0.3677482604980469 7 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.3242 0 0 716.3166806958193 0 716.3166806958193 0 9.54242509439325 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.3242 + + 3 + NaN NaN 86835.4 NaN 5183 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7418 40.419 NaN 56243 35 0 5163.7 0.261 + 18625 MYAEETYPVA 10 35 587.2614933560795 1172.508433778959 2 587.2586059570312 MULTI HCD FTMS 0 0 0 7410 25610.5 1 0 0 8 Unmodified _MYAEETYPVA_ REV__ENSG00000186094|ENST00000371839|AGBL4;REV__nc|ENSG00000186094|Q5VU57-2|AGBL4 10.073929032068715 0.4168838835836452 1 MY 2 -1 19.464 0 0 1.66 0 0 0 875.3629244440061 875.3629244440061 12.385606273598313 0 0 0 0 0 0 0 0 MY 1.66 + + 11 + NaN NaN 95073.9 NaN 5184 2232 7410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7420 40.425 NaN 173090 35 0 21983 0.327 + 13127 KYLKAVEEL 9 60 546.8188186261202 1091.6230843190403 2 546.8184814453125 MULTI HCD FTMS 0 0 0 7419 101170.8984375 1 0 0 1 Unmodified _KYLKAVEEL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 41.95555342248728 0.056367691549927025 1 KY{I|L}[TP][KT]E{I|L} 9 4 + 30.994 0 0 2.8393 2.8393 79.354 0 0 0 2.757171254819685 0.8534811358448735 0.8534811358448735 0.8534811358448735 0 0.9916440611282625 0 0.9247425010840047 0 KY{I|L}[TP][KT]E{I|L};KY{I|L}[TP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 2.8393;2.7611 -;- 129 + NaN NaN 100312.4 NaN 5185 2233 7419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7421 40.429 NaN 144800 35 0 18412 0.263 + 11938 KFIWTNHKF 9 52 407.55733180093375 1219.6501660030012 3 407.5574035644531 MULTI HCD FTMS 0 0 0 7419 80565.09375 0.3210841234492591 18 -0.5001564025878906 2 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 17.11289562659939 0.2125047172822487 1 K{M(Oxidation (M))|F}{I|L} 3 6 30.005 0 0 2.4601 0 0 0 828.3803183986763 828.3803183986763 15.400990676322905 0 0 0 0 0.3807196863200844 0 0 0 + K{M(Oxidation (M))|F}{I|L} 2.4601 + + 23 + NaN NaN 115869 NaN 5186 2233 7419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7422 40.433 NaN 99479 35 0 11024 0.261 -1 DLSCPEGLE 9 49 510.22232460356554 NaN 0 510.2120361328125 PEAK HCD FTMS 0 0 0 7419 2510.551025390625 0.874768733058253 -1 0.029819488525390625 3 Carbamidomethyl (C) _DLSC(Carbamidomethyl (C))PEGLE_ ENSG00000111671|ENST00000524270|SPSB2;nc|ENSG00000111671|Q99619-2|SPSB2 6.723162845929126 0.26266733336404485 1 {I|L}EW 3 -1 11.911 0 0 1.1696 0 0 115.04742357985704 472.14902673892817 587.1964503187852 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L}EW 1.1696 - 16 + NaN NaN 115017.8 NaN 5187 2233 7419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7423 40.436 NaN 103690 35 0 15141 0.261 + 27712 TASADGTIKL 10 42 488.7691724277991 975.5237919223982 2 488.7693176269531 MULTI HCD FTMS 0 0 0 7419 43444.63671875 0.546989122803083 2 -0.04302215576171875 4 Unmodified _TASADGTIKL_ ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF 19.361941925380144 0.3300069447713393 1 K{I|L} 2 8 20.261 0 0 2.0769 0 0 716.3359486664255 0 716.3359486664255 0 18.667053245199625 0 0 0 0.3807196863200844 0 0 0 + K{I|L} 2.0769 + + 17 NaN NaN 102211.2 NaN 5188 2233 7419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7424 40.439 NaN 84574 35 0 6094.3 0.261 -1 KYVGAVQML 9 37 512.7776713303191 1023.5407897274382 2 512.7782592773438 MULTI HCD FTMS 0 0 0 7419 28049.822265625 0.5831846152246845 3 -0.07282257080078125 5 Oxidation (M) _KYVGAVQM(Oxidation (M))L_ ENSG00000048471|ENST00000566228|SNX29;nc|ENSG00000048471|Q8TEQ0-2|SNX29 36.12702656103203 0.08312389501731911 1 QVQ{M(Oxidation (M))|F}{I|L} 5 -1 49.949 0 0 4.88 0 0 390.22563368965 0 390.22563368965 0 39.49092531119419 0 0 0 1.3494850021680094 0 0 0 QVQ{M(Oxidation (M))|F}{I|L} 4.88 - 59 NaN NaN 94194.9 NaN 5189 2233 7419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7425 40.443 NaN 55674 35 0 9075.1 0.261 -1 YEPYGMYSD 9 28 570.7137643426227 1139.4129757520452 2 570.71337890625 MULTI HCD FTMS 0 0 0 7419 19849.083984375 0.5380568702463459 -5 0.15472793579101562 6 Oxidation (M) _YEPYGM(Oxidation (M))YSD_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 1.844237919475145 0.33703635659052655 1 YPE 3 -1 26.198 0 0 2.2992 0 0 0 747.2326446037354 747.2326446037354 26.197887582883936 0 0 0 0 0 0 0 0 YPE 2.2992 - 6 + NaN NaN 94503.9 NaN 5190 2233 7419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7427 40.448 NaN 99582 35 0 10122 0.327 + 17662 MADEFHSTL 9 36 533.7297376100073 1065.4449222868145 2 533.7291259765625 MULTI HCD FTMS 0 0 0 7426 61459.76171875 0.8016634707872299 -1 0.0231781005859375 1 Oxidation (M) _M(Oxidation (M))ADEFHSTL_ ENST00000434600.6_2_X:119590527-119590569:-|nuORF 52.268347100219714 0.028397529699942435 1 {[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F}H{[MG]|[TS]}{I|L} 9 0 + 56.422 0 0 5.2956 5.2956 91.781 0 0 0 5.145476260727783 46.50035782629692 5.145476260727783 56.421882883664324 0 1.6822333069283655 1.5228787452803376 0.4247425010840047 0 + + {[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F}H{[MG]|[TS]}{I|L} 5.2956 + + 40 NaN NaN 97331.3 NaN 5191 2234 7426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7428 40.452 NaN 87405 35 0 6952.4 0.261 + 9461 HPVSREWTL 9 33 562.7957015412279 1123.5768501492557 2 562.7952880859375 MULTI HCD FTMS 0 0 0 7426 26230.59765625 0.0318154909209885 69 -1.9024887084960938 2 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 5.731851221503515 0.3075653528928475 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3736201512867 787.3736201512867 28.098943791441968 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 9 + NaN NaN 101281.1 NaN 5192 2234 7426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7429 40.456 NaN 47598 35 0 7853 0.262 -1 0 31 475.2715220239656 948.5284911147312 2 475.2708740234375 MULTI HCD FTMS 0 0 0 7426 13886.388671875 0.3834962071269637 4 -0.09943008422851562 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93989.1 NaN 5193 2234 7426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7430 40.459 NaN 41898 35 0 5264.8 0.261 + -1 LRSQYAIHM 9 26 567.789770686782 1133.564988440364 2 567.7894287109375 MULTI HCD FTMS 0 0 0 7426 18960.107421875 1 0 0 4 Oxidation (M) _LRSQYAIHM(Oxidation (M))_ REV__ENSG00000187003|ENST00000333999|ACTL7A 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 88209.3 NaN 5194 2234 7426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7431 40.462 NaN 68234 35 0 10543 0.261 -1 0 30 616.6632657150847 1846.9679677454537 3 616.9957885742188 MULTI HCD FTMS 0 0 0 7426 16322.0244140625 0.5328690432496859 -2 0.052997589111328125 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96129.6 NaN 5195 2234 7426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7433 40.468 NaN 227910 35 0 50209 0.327 + 25571 SFSLRCISE 9 47 521.2556575639986 NaN 0 521.2677001953125 PEAK HCD FTMS 0 0 0 7432 5220.99462890625 0.3901165840567101 3 -0.07958602905273438 1 Unmodified _SFSLRCISE_ TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant 10.073929032068715 0.24642998803896465 1 C{I|L}SC 4 6 22.423 0 0 2.155 0 0 131.0716045793659 500.2813814752563 631.3529860546222 0 0 0 0 0 0 0 0.3494850021680094 0 C{I|L}SC 2.155 - 51 + NaN NaN 118112.4 NaN 5196 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7434 40.472 NaN 82700 35 0 12141 0.261 -1 RYQQWMERF 9 44 453.88009176156794 1358.6184458849038 3 453.8795166015625 MULTI HCD FTMS 0 0 0 7432 33147.5546875 0.2788527810670021 13 -0.374420166015625 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 12.174745833636585 0.2551692358394414 1 {M(Oxidation (M))|F} 1 -1 19.604 0 0 1.4429 0 0 1193.5394949345116 0 1193.5394949345116 0 9.119543704721593 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.4429 + + 16 + NaN NaN 99755.7 NaN 5197 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7435 40.476 NaN 59383 35 0 13717 0.261 + 15231 LNYIVRTLAEA 11 25 421.5752409833658 1261.7038935502974 3 421.5753479003906 MULTI HCD FTMS 0 0 0 7432 19169.3203125 0.7131067391900452 -19 0.5233116149902344 3 Unmodified _LNYIVRTLAEA_ REV__ENSG00000125912|ENST00000246117|NCLN;REV__nc|ENSG00000125912|Q969V3-2|NCLN 1.0135738785822086 0.41447547578978133 1 M 1 -1 14.604 0 0 1.1575 0 0 1112.6529577366239 0 1112.6529577366239 0 13.345033904792878 0 0 0 0 0 0 0 M 1.1575 - 5 + NaN NaN 93768.7 NaN 5198 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7436 40.479 NaN 46685 35 0 6315 0.261 + -1 FEDAEDIMM 9 30 566.7124600272475 1131.410367121295 2 566.7125244140625 MULTI HCD FTMS 0 0 0 7432 11744.1572265625 0.3761073117147098 -4 0.10931777954101562 4 2 Oxidation (M) _FEDAEDIM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000102786|ENST00000311234|INTS6;REV__ENSG00000165359|ENST00000639893|INTS6L;REV__nc|ENSG00000102786|Q9UL03-3|INTS6;REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L;REV__nc|ENSG00000165359|Q5JSJ4|INTS6L 23.1484247019978 0.1603590852062899 1 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 47.735 0 0 4.2191 0 0 619.2136097638687 0 619.2136097638687 0 33.13100339696028 0 0 0 1 0 0.8807196863200843 0 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2191 - 15 NaN NaN 89850.3 NaN 5199 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7437 40.482 NaN 62096 35 0 12712 0.262 + 18635 MYDDIAHS 8 29 476.1981833591701 NaN 0 476.1983337402344 PEAK HCD FTMS 0 0 0 7432 16784.78515625 0.562117627774536 -46 1.2719001770019531 5 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 5.4846 0 0 0.57709 0 0 615.2715670583809 217.05393396549064 832.3255010238715 0 0 0 0 0 0 0 0 0 + D 0.57709 + + 4 + NaN NaN 107455 NaN 5200 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7438 40.486 NaN 67845 35 0 10834 0.261 -1 NYIMKIHNF 9 39 598.3006943446485 1194.586835756097 2 598.3020629882812 MULTI HCD FTMS 0 0 0 7432 27938.861328125 1 0 0 6 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 14.838274106304384 0.23215694253501695 1 [YN]{I|L}DK 5 -1 38.557 0 0 3.2276 0 0 0 558.2680147760374 558.2680147760374 35.06166867536862 0 0 0 0 0.5 1.5228787452803376 0 0 [YN]{I|L}DK 3.2276 - 32 + NaN NaN 95828.8 NaN 5201 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7439 40.489 NaN 39025 35 0 5941 0.261 + 3521 EIFQNEVAR 9 23 553.2853389351495 1104.556124937099 2 553.2848510742188 MULTI HCD FTMS 0 0 0 7432 14534.5576171875 1 0 0 7 Unmodified _EIFQNEVAR_ ENSG00000023318|ENST00000262455|ERP44 3.2813086475875832 0.32614229037259 1 R 1 8 5.4846 0 0 0.49654 0 0 517.2540141966678 428.19150720767817 945.445521404346 0 0 0 0 0 0 0 0 0 + R 0.49654 + + 2 + NaN NaN 91818.7 NaN 5202 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7440 40.492 NaN 31383 35 0 4501.3 0.261 + 26512 SVKEISDIVQR 11 24 637.3594347035784 1272.7043164739566 2 637.3601684570312 MULTI HCD FTMS 0 0 0 7432 6851.0947265625 0.41747682297964556 -3 0.07284164428710938 8 Unmodified _SVKEISDIVQR_ ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 7.945399516374404 0.3840748433199446 1 WKE{I|L} 4 8 36.938 0 0 2.9023 0 0 0 713.3601168268186 713.3601168268186 36.938200260161125 0 0 0 0 0.5 0 0 0 WKE{I|L} 2.9023 - 6 + NaN NaN 85777.9 NaN 5203 2235 7432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7442 40.497 NaN 146150 35 0 44629 0.327 + -1 LCCACWFFM 9 24 619.235949485274 1236.4573460373479 2 619.2360229492188 MULTI HCD FTMS 0 0 0 7441 74576.765625 0.6781375783369386 -4 0.10264205932617188 1 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))C(Carbamidomethyl (C))ACWFFM_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF;REV__nc|ENSG00000123843|P20851-2|C4BPB 5.230669730166228 0.3113646817964458 1 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.340813284275 1005.340813284275 20.969100130080562 0 0 0 0 0 0 0 0 MP 1.6959 - 2 + NaN NaN 120150.5 NaN 5204 2236 7441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7443 40.502 NaN 83486 35 0 14086 0.261 + 3333 EELEQKYTY 9 32 601.7827130673791 1201.550873201558 2 601.7825317382812 MULTI HCD FTMS 0 0 0 7441 50901.77734375 0.1559053378102229 8 -0.22883987426757812 2 Unmodified _EELEQKYTY_ ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 32.037481411007896 0.10189719824197178 1 TAEQ[YK]TY 8 3 57.696 0 0 4.8018 0 0 199.08370824645175 0 199.08370824645175 0 50.70615965204567 0 0 0 1.274227503252014 0 0.3807196863200844 0 TAEQ[YK]TY 4.8018 - 75 + NaN NaN 105827 NaN 5205 2236 7441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7444 40.505 NaN 76101 35 0 20928 0.264 -1 CMCVRYTALQ 10 26 439.8630075461556 1316.5671932386667 3 439.8629150390625 MULTI HCD FTMS 0 0 0 7441 50609.26171875 1 0 0 3 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))C(Carbamidomethyl (C))VRYTALQ_ ENST00000409236.6_1_2:100167659-100167914:-|nuORF 0.776531954647913 0.4711933975711956 1 {[QN]|[E{I|L}]|[KN]}A 3 -1 7.4473 0 0 0.56566 0 0 0 1000.3807362897011 1000.3807362897011 1.962724883926656 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}A 0.56566 - 4 NaN NaN 92264.9 NaN 5206 2236 7441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7445 40.509 NaN 63146 35 0 10237 0.261 + 18086 MMTIRRWY 8 26 578.7911508688463 1155.5677488044926 2 579.29248046875 MULTI HCD FTMS 0 0 0 7441 31313.08984375 0.20267312626206901 69 -1.9122962951660156 4 Unmodified _MMTIRRWY_ REV__ENSG00000116729|ENST00000262348|WLS;REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF;REV__nc|ENSG00000116729|Q5T9L3-2|WLS;REV__nc|ENSG00000116729|Q5T9L3-3|WLS 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91299.9 NaN 5207 2236 7441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7446 40.512 NaN 19823 35 0 3384 0.261 + -1 IMHVEEMLF 9 16 590.7729383668844 1179.5313238005688 2 590.773193359375 MULTI HCD FTMS 0 0 0 7441 21047.6171875 0.6341850903022772 9 -0.2519264221191406 5 2 Oxidation (M) _IM(Oxidation (M))HVEEM(Oxidation (M))LF_ REV__ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;REV__ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;REV__ENSG00000114770|ENST00000334444|ABCC5;REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF;REV__nc|ENSG00000114770|O15440-5|ABCC5 2.0597508629832335 0.3354026079994024 1 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7777 0 0 886.393846580275 0 886.393846580275 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.7777 - 1 NaN NaN 86505.7 NaN 5208 2236 7441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7448 40.517 NaN 675150 35 0 103660 0.327 + 23620 RPNSIDPAL 9 50 491.7696238035828 981.5246946739657 2 491.76947021484375 MULTI HCD FTMS 0 0 0 7447 459415.09375 0.9161607241898917 2 -0.06301116943359375 1 Unmodified _RPNSIDPAL_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 47.594388314883695 0.03493607795751234 1 [PA]D[RK]DPA{I|L} 9 4 + 74.403 0 0 7.5803 7.5803 91.962 0 0 0 10.69599075987611 16.478174818886373 10.69599075987611 10.69599075987611 0 1.4247425010840047 1.6989700043360187 0.7302046884880937 0 [PA]D[RK]DPA{I|L};[RP]N{[TV]|[{I|L}S]}DPA{I|L};[RP]GG{[TV]|[{I|L}S]}DPA{I|L};[PA]D[RK]D{I|L}[PA];[RP]N{[TV]|[{I|L}S]}D{I|L}[PA];[RP]GG{[TV]|[{I|L}S]}D{I|L}[PA] 7.5803;6.4906;5.5524;4.5427;3.4529;2.5148 -;+;-;-;-;- + 139 NaN NaN 201138.4 NaN 5209 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7449 40.522 NaN 325230 35 0 22328 0.261 + 6831 FPSTAEHTL 9 56 501.7485237125726 1001.4824944919452 2 501.7481384277344 MULTI HCD FTMS 0 0 0 7447 169319.75 0.8036081022416265 -4 0.09274673461914062 2 Unmodified _FPSTAEHTL_ ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF 120.45040980043947 0.0012363446172167195 1 {I|L}MSTR 5 7 71.019 0 0 7.0913 0 0 0 410.1610907584382 410.1610907584382 22.614393726401687 0 0 0 0 1 1.6989700043360187 1.3807196863200843 0.3054621874040891 {I|L}MSTR 7.0913 - 288 + NaN NaN 126269.8 NaN 5210 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7450 40.525 NaN 129510 35 0 29690 0.261 + 28379 TPEKSVVSL 9 41 480.2743181306406 958.5340833280812 2 480.27398681640625 MULTI HCD FTMS 0 0 0 7447 120893.9140625 0.7611690676075249 2 -0.06301116943359375 3 Unmodified _TPEKSVVSL_ ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF;nc|ENSG00000103249|P51798-2|CLCN7 40.72490554402381 0.06201705472789164 1 [TP]EK[VS]VS{I|L} 9 0 + 49.135 0 0 5.126 5.126 89.254 0 0 0 5.6424927368725974 28.16569691289537 5.6424927368725974 17.972740049021066 0 1.8494850021680094 0 0.3807196863200844 0 + + [TP]EK[VS]VS{I|L};TPE[{I|L}A][KT]S{I|L};{[TV]|[{I|L}S]}[KQ]HHP{I|L} 5.126;3.251;1.4713 +;-;- + 97 NaN NaN 103904.7 NaN 5211 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7451 40.529 NaN 179270 35 0 27920 0.261 + 31410 VYANGIRNI 9 56 510.2853413246384 1018.5561297160768 2 510.284912109375 MULTI HCD FTMS 0 0 0 7447 68489.265625 0.5067475971381846 -2 0.049724578857421875 4 Unmodified _VYANGIRNI_ ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 68.08070601005525 0.009709267492204555 1 [YV]AN{[VA]|[{I|L}G]}RN{I|L} 9 0 + 65.965 0 0 6.4763 6.4763 88.792 0 0 0 0.9319560784774694 0.9319560784774694 0.9319560784774694 9.208187539523749 0 2.1593793813122066 2 0 0.4247425010840047 + + [YV]AN{[VA]|[{I|L}G]}RN{I|L};[YV]AGG{[VA]|[{I|L}G]}RN{I|L};[YV]AN{[VA]|[{I|L}G]}RGG{I|L};[YV][RN][Q{I|L}]N{I|L} 6.4763;5.5722;5.4807;3.161 +;-;-;- + 146 + NaN NaN 111580.9 NaN 5212 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7452 40.532 NaN 57382 35 0 9583.2 0.261 -1 NYIMKIHNF 9 31 598.3006943446485 1194.586835756097 2 598.300537109375 MULTI HCD FTMS 0 0 0 7447 18423.8203125 0.6594334713975417 2 -0.06301116943359375 5 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 29.081581746732265 0.1154664336125038 1 NY{I|L}DK 5 -1 45.745 0 0 3.8294 0 0 0 558.2702730768186 558.2702730768186 34.574484699911565 0 0 0 0 0.805462187404089 0 0 0.4247425010840047 NY{I|L}DK 3.8294 - 66 + NaN NaN 92330.8 NaN 5213 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7453 40.535 NaN 56729 35 0 6671 0.261 + -1 WEMLDYMM 8 31 575.7175456891052 1149.4205384450104 2 575.7177734375 MULTI HCD FTMS 0 0 0 7447 16267.416015625 0.8653979509117369 -3 0.06956863403320312 6 2 Oxidation (M) _WEMLDYM(Oxidation (M))M(Oxidation (M))_ REV__DOCK2|p.K268Rfs*9|1|0.19|ENSG00000134516|chr5:169689292-169689292|A/-|frameshift_variant;REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF 14.581692164780916 0.48650662947107914 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 24.949 0 0 2.1705 0 0 837.3394032209 0 837.3394032209 0 24.948500216800937 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1705 + + 8 NaN NaN 100741.6 NaN 5214 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7454 40.539 NaN 20460 35 0 3490.5 0.261 -1 TPFNTREPVM 10 20 604.2924883685753 1206.5704238039505 2 604.29296875 MULTI HCD FTMS 0 0 0 7447 19105.76953125 0.6298748776022737 -5 0.12256622314453125 7 Oxidation (M) _TPFNTREPVM(Oxidation (M))_ ENSG00000242574|ENST00000418107|HLA-DMB 7.101721422024254 0.4377131641736035 1 N 1 -1 5.4846 0 0 0.45456 0 0 345.1690698994567 744.3369845025999 1089.5060544020566 0 0 0 0 0 0 0 0 0 N 0.45456 + + 1 + NaN NaN 88715.8 NaN 5215 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7455 40.542 NaN 48281 35 0 6432.5 0.264 -1 RYVRKFVLM 9 33 409.9057410070015 NaN 0 409.90618896484375 PEAK HCD FTMS 0 0 0 7447 9025.884765625 0.6245567795231194 10 -0.28830718994140625 8 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 2.735195868890462 0.2819924647978786 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90372.3 NaN 5216 2237 7447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7457 40.547 NaN 559120 35 0 74417 0.327 + 34406 YPESESIMM 9 60 559.722735449113 1117.4309179650259 2 559.7227172851562 MULTI HCD FTMS 0 0 0 7456 314681.28125 0.9277392041314416 1 -0.03314971923828125 1 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 112.59319219568356 0.00251905749371435 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ESES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 89.346 0 0 7.9957 7.9957 96.286 0 0 0 3.65279269351241 59.79364375124895 3.65279269351241 51.98970004336019 0 2.8494850021680094 0 1.6237125054200234 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ESES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EM{[RE]|[WV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ES[MT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EM{[MG]|[TS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 7.9957;3.3431;2.3361;1.2597 +;-;-;- + 684 NaN NaN 189912.5 NaN 5217 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7458 40.552 NaN 233890 35 0 34642 0.261 + -1 QHVILDSKM 9 52 543.7831691918867 1085.5517854505733 2 543.7951049804688 MULTI HCD FTMS 0 0 0 7456 6792.98388671875 0.3232348609228883 6 -0.17905426025390625 2 Oxidation (M) _QHVILDSKM(Oxidation (M))_ REV__ENSG00000197619|ENST00000598071|ZNF615;REV__nc|ENSG00000197619|Q8N8J6-3|ZNF615;REV__nc|ENSG00000197619|Q8N8J6|ZNF615 22.736283301280096 0.1639198954644489 1 KSTTD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8 -1 50.812 0 0 4.6808 0 0 165.05644591794606 0 165.05644591794606 0 12.100775082214668 0 0 0 0 0 1.1861818737241734 1.1861818737241734 KSTTD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.6808 - 233 + NaN NaN 135302.2 NaN 5218 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7459 40.555 NaN 157320 35 0 16112 0.261 -1 HPTGKMFIL 9 36 530.2863663466561 1058.5581797601121 2 530.2864379882812 MULTI HCD FTMS 0 0 0 7456 65171.9609375 0.272624912995119 18 -0.5177574157714844 3 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 1 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3748262994749 720.3748262994749 27.486512420283233 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 15 + NaN NaN 106792.8 NaN 5219 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7460 40.558 NaN 232360 35 0 32580 0.261 + 9409 HPTTTEYTF 9 49 548.7509367541168 1095.4873205750334 2 548.7510375976562 MULTI HCD FTMS 0 0 0 7456 105136.3046875 0.7851025196537472 -3 0.07958602905273438 4 Unmodified _HPTTTEYTF_ L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense 50.855029805455786 0.030374663808198754 1 YT{M(Oxidation (M))|F} 3 6 48.188 0 0 4.3987 0 0 666.2987352252272 0 666.2987352252272 0 31.989700043360187 0 0 0 1.5 0 0.6989700043360187 0 + YT{M(Oxidation (M))|F} 4.3987 + + 25 + NaN NaN 116018.7 NaN 5220 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7461 40.562 NaN 75718 35 0 18261 0.261 + 20423 PACACDENL 9 19 468.1835773996009 934.3526018660018 2 468.18341064453125 MULTI HCD FTMS 0 0 0 7456 54174.54296875 0.709437063734062 -1 0.0298614501953125 5 Unmodified _PACACDENL_ REV__ENSG00000147481|ENST00000642720|SNTG1;REV__nc|ENSG00000147481|Q9NSN8-2|SNTG1 4.3292370932331545 0.3181982124262546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112906.1 NaN 5221 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7462 40.565 NaN 53859 35 0 12894 0.261 + 18067 MMEVDPLVLT 10 16 574.29089224354 NaN 0 574.2916259765625 PEAK HCD FTMS 0 0 0 7456 27018.56640625 0.8457908206469351 4 -0.12938308715820312 6 Unmodified _MMEVDPLVLT_ ENSG00000183090|ENST00000329798|FREM3 3.2813086475875832 0.33737594360511275 1 {I|L}V 2 8 10.969 0 0 0.95669 0 0 119.06539836996201 812.3359282663407 931.4013266363028 0 0 0 0 0 0 0 0 0 + {I|L}V 0.95669 + + 3 + NaN NaN 95505 NaN 5222 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7463 40.568 NaN 44664 35 0 8957.3 0.261 -1 DGSDEDGCVDC 11 21 586.178294465716 1170.342035998232 2 586.1782836914062 MULTI HCD FTMS 0 0 0 7456 22068.787109375 0.8393061147602404 -1 0.0298614501953125 7 Carbamidomethyl (C) _DGSDEDGC(Carbamidomethyl (C))VDC_ nc|ENSG00000197558|A2VEC9|SSPOP 0.3070304955306653 0.41757413505135293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90986.7 NaN 5223 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7464 40.572 NaN 53862 35 0 5248.6 0.262 + -1 HFDMGEVL 8 30 482.21744160788256 NaN 0 482.2337646484375 PEAK HCD FTMS 0 0 0 7456 2258.020751953125 0.17352659526365619 4 -0.12938308715820312 8 Oxidation (M) _HFDM(Oxidation (M))GEVL_ REV__ENSG00000058404|ENST00000395749|CAMK2B;REV__ENSG00000145349|ENST00000511664|CAMK2D;REV__ENSG00000148660|ENST00000423381|CAMK2G;REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF;REV__ENST00000477205.2_1_10:75576469-75577313:-|nuORF;REV__ENST00000489429.5_1_7:44259663-44268887:-|nuORF;REV__ENST00000497584.5_1_7:44259663-44373862:-|nuORF;REV__ENST00000523845.5_1_7:44259663-44270619:-|nuORF;REV__nc|ENSG00000058404|Q13554-2|CAMK2B;REV__nc|ENSG00000058404|Q13554-3|CAMK2B;REV__nc|ENSG00000058404|Q13554-4|CAMK2B;REV__nc|ENSG00000058404|Q13554-5|CAMK2B;REV__nc|ENSG00000058404|Q13554-7|CAMK2B;REV__nc|ENSG00000058404|Q13554-8|CAMK2B;REV__nc|ENSG00000145349|Q13557-10|CAMK2D;REV__nc|ENSG00000145349|Q13557-11|CAMK2D;REV__nc|ENSG00000145349|Q13557-12|CAMK2D;REV__nc|ENSG00000145349|Q13557-3|CAMK2D;REV__nc|ENSG00000145349|Q13557-4|CAMK2D;REV__nc|ENSG00000145349|Q13557-5|CAMK2D;REV__nc|ENSG00000145349|Q13557-6|CAMK2D;REV__nc|ENSG00000145349|Q13557-8|CAMK2D;REV__nc|ENSG00000145349|Q13557-9|CAMK2D;REV__nc|ENSG00000145349|Q13557|CAMK2D;REV__nc|ENSG00000148660|Q13555-10|CAMK2G;REV__nc|ENSG00000148660|Q13555-11|CAMK2G;REV__nc|ENSG00000148660|Q13555-2|CAMK2G;REV__nc|ENSG00000148660|Q13555-3|CAMK2G;REV__nc|ENSG00000148660|Q13555-4|CAMK2G;REV__nc|ENSG00000148660|Q13555-5|CAMK2G;REV__nc|ENSG00000148660|Q13555-6|CAMK2G;REV__nc|ENSG00000148660|Q13555-7|CAMK2G;REV__nc|ENSG00000148660|Q13555-8|CAMK2G;REV__nc|ENSG00000148660|Q13555-9|CAMK2G;REV__nc|ENSG00000148660|Q13555|CAMK2G 2.302733041254933 0.38822285293237185 1 V 1 -1 5.4846 0 0 0.56987 0 0 267.0945666691278 593.2346895807249 860.3292562498527 0 0 0 0 0 0 0 0 0 V 0.56987 + + 1 + NaN NaN 94067.3 NaN 5224 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7465 40.575 NaN 36682 35 0 11089 0.261 -1 VEPHPSRAFL 10 19 597.8152163227822 1193.6158797123644 2 597.8131713867188 MULTI HCD FTMS 0 0 0 7456 20712.78125 0.21235928344773494 35 -0.9931221008300781 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VEPHPSRAFL_ ENST00000562362.5_1_16:66967966-66968053:-|nuORF 2.735195868890462 0.4608258780945842 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 88750.4 NaN 5225 2238 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7467 40.58 NaN 278570 35 0 68542 0.327 + 13875 KYQAVTATL 9 49 497.7821702862789 993.5497876393579 2 497.78192138671875 MULTI HCD FTMS 0 0 0 7466 151259.15625 0.45931123616989883 3 -0.09623336791992188 1 Unmodified _KYQAVTATL_ ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 43.77239144664712 0.04802738721622131 1 SN{[QN]|[E{I|L}]|[KN]}TAT{I|L} 8 4 49.87 0 0 5.0194 0 0 146.11297230908286 0 146.11297230908286 0 33.672137691284405 0 0 0 1.9247425010840047 0 1.274227503252014 0 SN{[QN]|[E{I|L}]|[KN]}TAT{I|L} 5.0194 - 207 + NaN NaN 120921.8 NaN 5226 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7468 40.585 NaN 127810 35 0 15347 0.262 + 11939 KFIWTNHKF 9 59 407.55733180093375 1219.6501660030012 3 407.5572509765625 MULTI HCD FTMS 0 0 0 7466 47911.18359375 0.19094523039161412 24 -0.6629257202148438 2 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 11.494710602746466 0.2610445893512368 1 {I|L} 1 8 12.218 0 0 1.0018 0 0 1088.5554679822965 0 1088.5554679822965 0 2.8330122870354995 0 0 0 0 0 0 0 + {I|L} 1.0018 + + 50 + NaN NaN 104639.9 NaN 5227 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7469 40.588 NaN 57838 35 0 6649.7 0.261 + 30959 VRPGDHRRG 9 30 525.2875619556343 NaN 0 525.2726440429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VRPGDHRRG_ REV__ENST00000379937.6_3_14:105695225-105767012:-|nuORF;REV__ENST00000548421.2_1_14:105722813-105767174:-|nuORF 3.5964929083625545 0.27781873954207675 1 VGGWV 5 -1 17.167 0 0 1.6372 0 0 188.111260768421 359.16840540103755 547.2796661694586 0 0 0 0 0 0 0 0 0 VGGWV 1.6372 - 56 + NaN NaN 98863.4 NaN 5228 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7470 40.592 NaN 22128 35 0 4154.9 0.261 + 26513 SVKEISDIVQR 11 20 637.3594347035784 1272.7043164739566 2 637.359130859375 MULTI HCD FTMS 0 0 0 7466 13578.837890625 0.8274371218887046 1 -0.029842376708984375 4 Unmodified _SVKEISDIVQR_ ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 2.0860074813731053 0.4097721463192591 1 E{I|L} 2 9 10.969 0 0 0.86187 0 0 314.1987755577441 713.3557833307249 1027.554558888469 0 0 0 0 0 0 0 0 0 + E{I|L} 0.86187 + + 3 + NaN NaN 87117.5 NaN 5229 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7471 40.595 NaN 34741 35 0 6539.8 0.263 + -1 YSVEDRMI 8 23 514.7397132966224 1027.4648736600448 2 514.739013671875 MULTI HCD FTMS 0 0 0 7466 11988.357421875 0.15471707120882316 15 -0.43151092529296875 5 Oxidation (M) _YSVEDRM(Oxidation (M))I_ REV__ENSG00000115896|ENST00000428675|PLCL1;REV__nc|ENSG00000115896|Q15111-2|PLCL1;REV__PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant 1.844237919475145 0.5392561982033289 1 {M(Oxidation (M))|F}{I|L} 2 -1 20.969 0 0 2.0409 0 0 749.3351917951187 0 749.3351917951187 0 20.969100130080562 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 2.0409 + + 1 NaN NaN 91094.2 NaN 5230 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7472 40.598 NaN 35347 35 0 5818.6 0.261 + 205 AETVRYSMCT 10 22 580.756873986535 1159.4991950398698 2 580.7576293945312 MULTI HCD FTMS 0 0 0 7466 6471.49609375 0.003947611442773096 79 -2.1991043090820312 6 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 1.1933415558491238 0.46898715808974617 1 S 1 9 6.9897 0 0 0.60282 0 0 353.109227627381 716.3352755182249 1069.444503145606 0 0 0 0 0 0 0 0 0 + S 0.60282 + + 3 + NaN NaN 81909.8 NaN 5231 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7473 40.602 NaN 34706 35 0 5660.9 0.261 + 9561 HRMRVECPVV 10 22 613.3160920722474 NaN 0 613.3153686523438 PEAK HCD FTMS 0 0 0 7466 11718.9384765625 0.6456351355015708 27 -0.7621917724609375 7 Unmodified _HRMRVECPVV_ ENST00000393409.2_1_3:126752902-126753223:+|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98644.6 NaN 5232 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7474 40.605 NaN 39999 35 0 7470.2 0.261 + 29750 VDTRVMEQK 9 27 553.2853389351495 1104.556124937099 2 553.2672729492188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _VDTRVMEQK_ REV__ENSG00000132669|ENST00000255006|RIN2;REV__ENST00000467569.5_1_20:19870056-19916128:+|nuORF;REV__ENST00000484638.1_1_20:19915775-19951501:+|nuORF;REV__nc|ENSG00000132669|Q8WYP3-2|RIN2 1.4819007175156935 0.3397831423917744 1 W 1 -1 6.9897 0 0 0.63281 0 0 768.5467082884646 146.91102014713127 915.4577284355959 0 0 0 0 0 0 0 0 0 W 0.63281 - 5 + NaN NaN 94288.3 NaN 5233 2239 7466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7476 40.61 NaN 116510 35 0 22961 0.327 + -1 DHTIDMTTL 9 36 531.7421757598927 1061.4697985865853 2 531.7425537109375 MULTI HCD FTMS 0 0 0 7475 42483.52734375 0.06966888988057504 -23 0.6427154541015625 1 Oxidation (M) _DHTIDM(Oxidation (M))TTL_ REV__ENSG00000149809|ENST00000279263|TM7SF2;REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF;REV__ENST00000529601.5_1_11:64879444-64883522:+|nuORF;REV__ENST00000530650.5_1_11:64879967-64883522:+|nuORF;REV__ENST00000532328.5_1_11:64880864-64882880:+|nuORF;REV__nc|ENSG00000149809|O76062-2|TM7SF2 32.30548876998284 0.10066689432505688 1 TT{I|L} 3 -1 44.253 0 0 4.169 0 0 728.2795387574537 0 728.2795387574537 0 24.78855930516417 0 0 0 1 0 0.805462187404089 0 TT{I|L} 4.169 + + 19 NaN NaN 110199.9 NaN 5234 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7477 40.615 NaN 117330 35 0 11132 0.261 + 3686 ELPFFKRR 8 53 546.8188186261202 1091.6230843190403 2 547.8050537109375 MULTI HCD FTMS 0 0 0 7475 3584.709228515625 0.1619179422000137 4 -0.11606216430664062 2 Unmodified _ELPFFKRR_ REV__nc|ENSG00000176927|A4FU69-5|EFCAB5;REV__nc|ENSG00000176927|A4FU69-6|EFCAB5 4.75600775471527 0.5349361699807423 1 [EP]{I|L}[RK]{I|L}ED 8 -1 14.914 0 0 1.3662 0 0 0 108.08606056447402 108.08606056447402 1.7263072694617438 0 0 0 0 0 0 0.8494850021680094 0 [EP]{I|L}[RK]{I|L}ED 1.3662 - 133 NaN NaN 93673.5 NaN 5235 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7478 40.618 NaN 59030 35 0 10046 0.261 + -1 MLENMDEQD 9 33 570.7137643426227 1139.4129757520452 2 570.713623046875 MULTI HCD FTMS 0 0 0 7475 25564.318359375 0.6929819601375234 2 -0.0663909912109375 3 Oxidation (M) _M(Oxidation (M))LENMDEQD_ REV__ENSG00000196535|ENST00000527372|MYO18A;REV__ENST00000546105.5_1_17:27401790-27418677:-|nuORF;REV__nc|ENSG00000196535|Q92614-2|MYO18A;REV__nc|ENSG00000196535|Q92614-3|MYO18A;REV__nc|ENSG00000196535|Q92614-4|MYO18A;REV__nc|ENSG00000196535|Q92614-5|MYO18A 3.5964929083625545 0.32375295897743744 1 YPE 3 -1 31.198 0 0 2.7381 0 0 0 747.2304171197874 747.2304171197874 31.197887582883936 0 0 0 0 0.5 0 0 0 YPE 2.7381 - 8 + NaN NaN 98441.4 NaN 5236 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7479 40.621 NaN 41072 35 0 6286.9 0.261 -1 0 23 616.6632657150847 1846.9679677454537 3 616.6630249023438 MULTI HCD FTMS 0 0 0 7475 11141.1337890625 0.41649736889949396 3 -0.09622573852539062 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104962.8 NaN 5237 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7480 40.625 NaN 76236 35 0 8038.2 0.264 -1 RYQQWMERF 9 41 453.88009176156794 1358.6184458849038 3 453.8802795410156 MULTI HCD FTMS 0 0 0 7475 21576.009765625 0.18150751644259813 18 -0.511077880859375 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 8.97624648632007 0.2828035605319045 1 W 1 -1 13.979 0 0 1.0289 0 0 575.2861837772851 594.2368359298647 1169.5230197071498 0 0 0 0 0 0.8494850021680094 0 0 0 W 1.0289 + + 14 + NaN NaN 91909.2 NaN 5238 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7481 40.628 NaN 77462 35 0 16628 0.261 + 1919 DADARAVAL 9 28 451.2404137672702 900.4662746013404 2 451.2401123046875 MULTI HCD FTMS 0 0 0 7475 46437.30859375 0.684367593495027 -2 0.06299209594726562 6 Unmodified _DADARAVAL_ ENSG00000162032|ENST00000566339|SPSB3;ENST00000563741.5_1_16:1828298-1832574:-|nuORF;ENST00000564709.5_1_16:1828298-1831862:-|nuORF;ENST00000565550.1_1_16:1828298-1832508:-|nuORF 16.149105407346934 0.22083165093524068 1 WDA 3 7 26.995 0 0 2.9979 0 0 0 525.3147677057249 525.3147677057249 1.025684359364405 0 0 0 0 0.3807196863200844 0 0 0 WDA 2.9979 - 7 + NaN NaN 93987.7 NaN 5239 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7482 40.631 NaN 27006 35 0 3367.3 0.261 -1 MSSMEHTEE 9 21 556.6977062094719 1111.3808594857437 2 556.69775390625 MULTI HCD FTMS 0 0 0 7475 14148.802734375 0.7631489680162031 2 -0.0663909912109375 7 2 Oxidation (M) _M(Oxidation (M))SSM(Oxidation (M))EHTEE_ ENSG00000141376|ENST00000407086|BCAS3;ENST00000585812.5_1_17:59431721-59456358:+|nuORF;ENST00000587294.5_1_17:59445549-59469483:+|nuORF;ENST00000592702.5_1_17:59431721-59469483:+|nuORF;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3 1.844237919475145 0.33703635659052655 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 10.458 0 0 0.94095 0 0 0 787.2597750299436 787.2597750299436 10.45757490560675 0 0 0 0 0 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 0.94095 + + 1 + NaN NaN 84143.1 NaN 5240 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7483 40.635 NaN 19326 35 0 2706.1 0.261 + 15220 LNTYSVTRVDS 11 19 627.8203488811796 1253.626144829159 2 627.8197021484375 MULTI HCD FTMS 0 0 0 7475 10446.244140625 0.8461973364089895 -1 0.029842376708984375 8 Unmodified _LNTYSVTRVDS_ REV__ENSG00000162733|ENST00000367921|DDR2 1.4551175022131473 0.41253901545122046 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 83188 NaN 5241 2240 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7485 40.64 NaN 372770 35 0 45358 0.327 + 1257 AYLSKAMEI 9 57 521.2678814558216 1040.521209978443 2 521.267822265625 MULTI HCD FTMS 0 0 0 7484 143962.765625 1 0 0 1 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ ENSG00000124784|ENST00000379834|RIOK1 90.13494162714682 0.004522430935000059 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKA{M(Oxidation (M))|F}E{I|L} 9 0 + 88.488 0 0 8.5042 8.5042 87.435 0 0 0 3.327935343467118 3.327935343467118 3.327935343467118 0.22878745280337398 0 2.56295299324845 1.6989700043360187 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKA{M(Oxidation (M))|F}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[TA]S{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]{[TV]|[{I|L}S]}S{I|L}C{I|L} 8.5042;8.4822;6.9673;6.9229;6.0878 +;-;-;-;- + 329 NaN NaN 140917.6 NaN 5242 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7486 40.644 NaN 94841 35 0 27620 0.261 + 14240 LCFACGCWFGM 11 19 619.235949485274 1236.4573460373479 2 619.2360229492188 MULTI HCD FTMS 0 0 0 7484 100154.0703125 0.910715799124685 1 -0.036510467529296875 2 Unmodified _LCFACGCWFGM_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84 1.4819007175156935 0.4124215533673021 1 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.3394077399328 1005.3394077399328 16.365006360318688 0 0 0 0 0 0 0 0 MP 1.6959 - 4 + NaN NaN 92804.5 NaN 5243 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7487 40.648 NaN 178570 35 0 57766 0.263 + 8495 HADQEYVL 8 31 487.73268452094294 973.4508161086859 2 487.73260498046875 MULTI HCD FTMS 0 0 0 7484 62974.625 0.28863769487224605 -3 0.09287261962890625 3 Unmodified _HADQEYVL_ ENSG00000112249|ENST00000369162|ASCC3 6.723162845929126 0.5320176132289695 1 [DV]N[HD]YV{I|L} 8 5 + 45.851 0 0 4.7102 4.7102 86.473 0 0 0 15.406075122407685 24.680475292681265 15.406075122407685 9.262137858390808 0 0.4247425010840047 1.3979400086720375 0 0 [DV]N[HD]YV{I|L};[DV]GG[HD]YV{I|L} 4.7102;3.7587 -;- 26 NaN NaN 108109 NaN 5244 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7488 40.651 NaN 300390 35 0 104300 0.261 + 8805 HIPLWLRP 8 33 516.3126934986028 NaN 0 516.3031616210938 PEAK HCD FTMS 0 0 0 7484 3349.21728515625 0.3222738641194466 4 -0.1092681884765625 4 Unmodified _HIPLWLRP_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 2.577480529830294 0.38822285293237185 1 H 1 -1 6.9897 0 0 0.67821 0 0 323.24109637044927 567.2836397760374 890.5247361464867 0 0 0 0 0 0 0 0 0 H 0.67821 + + 4 + NaN NaN 136328.1 NaN 5245 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7489 40.655 NaN 38555 35 0 5595 0.261 + -1 CKDPGFMIIY 10 27 601.7827130673791 1201.550873201558 2 601.781982421875 MULTI HCD FTMS 0 0 0 7484 19926.515625 0.06103225293915521 13 -0.37178802490234375 5 Oxidation (M) _CKDPGFM(Oxidation (M))IIY_ REV__ENSG00000153132|ENST00000325617|CLGN 6.723162845929126 0.4397169348982109 1 Y 1 -1 21.237 0 0 1.7675 0 0 1020.4778884376893 0 1020.4778884376893 0 10.779550148593485 0 0 0 0.4247425010840047 0 0 0 Y 1.7675 + + 3 + NaN NaN 85361.7 NaN 5246 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7490 40.658 NaN 70840 35 0 5547.8 0.261 + 9462 HPVSREWTL 9 32 562.7957015412279 1123.5768501492557 2 562.7957153320312 MULTI HCD FTMS 0 0 0 7484 23288.435546875 0.028246897741923332 76 -2.1129989624023438 6 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3749251236837 787.3749251236837 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 13 + NaN NaN 93823.9 NaN 5247 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7491 40.661 NaN 203380 35 0 15435 0.261 + 4610 EYLTKVDKL 9 50 554.8161976461816 1107.6178423591632 2 555.3174438476562 MULTI HCD FTMS 0 0 0 7484 41041.41796875 0.3037794342081463 -2 0.059722900390625 7 Unmodified _EYLTKVDKL_ ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 67.83816525789305 0.009787749748478139 1 [YE]{I|L}TKVDK{I|L} 9 0 + 68.299 0 0 6.1663 6.1663 93.497 0 0 0 41.348200093054714 11.39506772603255 11.39506772603255 68.2986626650986 0 1.1549471895720984 1.6989700043360187 0.9916440611282626 0 + + [YE]{I|L}TKVDK{I|L} 6.1663 + + 172 + NaN NaN 109459.6 NaN 5248 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7492 40.665 NaN 151390 35 0 18364 0.261 + 9014 HPEKLATVL 9 47 504.2977957027317 1006.5810384722635 2 504.29779052734375 MULTI HCD FTMS 0 0 0 7484 19725.87109375 0.00892470476253925 149 -4.183311462402344 8 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 4.3292370932331545 0.3181982124262546 1 E 1 8 6.9897 0 0 0.6944 0 0 300.28808480085155 574.2279757135374 874.516060514389 0 0 0 0 0 0 0 0 0 + E 0.6944 + + 14 + NaN NaN 110672.7 NaN 5249 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7493 40.668 NaN 67474 35 0 8912.6 0.261 -1 RYQQWMERF 9 36 453.88009176156794 1358.6184458849038 3 453.880615234375 MULTI HCD FTMS 0 0 0 7484 24013.587890625 0.20201356720961489 19 -0.5206527709960938 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 6.1918466704503565 0.30407824485930035 1 W 1 -1 11.237 0 0 0.8271 0 0 575.2792868046289 594.2371701223544 1169.5164569269832 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.8271 + + 13 + NaN NaN 91164.9 NaN 5250 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7494 40.671 NaN 38913 35 0 4992.3 0.261 + -1 FEDAEDIMM 9 27 566.7124600272475 1131.410367121295 2 566.71240234375 MULTI HCD FTMS 0 0 0 7484 14956.6279296875 0.4789868710399093 2 -0.06634521484375 10 2 Oxidation (M) _FEDAEDIM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000102786|ENST00000311234|INTS6;REV__ENSG00000165359|ENST00000639893|INTS6L;REV__nc|ENSG00000102786|Q9UL03-3|INTS6;REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L;REV__nc|ENSG00000165359|Q5JSJ4|INTS6L 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.2953 0 0 819.3311634748062 0 819.3311634748062 0 25.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2953 + + 3 NaN NaN 88194.8 NaN 5251 2241 7484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7496 40.677 NaN 362780 35 0 21543 0.327 + 6832 FPSTAEHTL 9 71 501.7485237125726 1001.4824944919452 2 501.74810791015625 MULTI HCD FTMS 0 0 0 7495 176386.71875 0.8371486274655793 1 -0.029834747314453125 1 Unmodified _FPSTAEHTL_ ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF 120.45040980043947 0.0012363446172167195 1 {I|L}MSTCPH 7 6 70.091 0 0 6.9987 0 0 0 229.1189364068969 229.1189364068969 21.598878259206842 0 0 0 0 1.6549471895720984 1.6989700043360187 1.305462187404089 0 {I|L}MSTCPH 6.9987 - 583 + NaN NaN 143828.2 NaN 5252 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7497 40.681 NaN 165330 35 0 19724 0.261 + 23621 RPNSIDPAL 9 32 491.7696238035828 981.5246946739657 2 491.76959228515625 MULTI HCD FTMS 0 0 0 7495 95421.09375 0.19028773660746 7 -0.18858718872070312 2 Unmodified _RPNSIDPAL_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 20.41453444215458 0.18397929046831515 1 [VS]PQRDPA{I|L} 9 5 + 66.08 0 0 6.7324 6.7324 89.306 0 0 0 9.76203644159419 56.414412723804546 9.76203644159419 9.208187539523749 0 1.4247425010840047 0 0.5 0 [VS]PQRDPA{I|L};[VS]P[AG]RDPA{I|L};[RP]{[SA]|[TG]}[VG]DPA{I|L} 6.7324;5.7942;3.9879 -;-;- 163 NaN NaN 110646.2 NaN 5253 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7498 40.685 NaN 193310 35 0 26037 0.261 + 19009 NAVAGESAL 9 43 416.214073212493 830.4135934917861 2 416.2139892578125 MULTI HCD FTMS 0 0 0 7495 118143.3515625 1 0 0 3 Unmodified _NAVAGESAL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 60.07390631473393 0.0174780869009295 1 {[QG]|[NA]}VA{[DA]|[EG]}SA{I|L} 9 0 + 48.963 0 0 5.8962 5.8962 92.575 0 0 0 34.98319373273603 4.476212463643421 4.476212463643421 48.9625938194564 0 2.1861818737241734 0 0.4247425010840047 0 + + {[QG]|[NA]}VA{[DA]|[EG]}SA{I|L} 5.8962 + + 55 + NaN NaN 119357.2 NaN 5254 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7499 40.688 NaN 152720 35 0 16662 0.261 + 31411 VYANGIRNI 9 40 510.2853413246384 1018.5561297160768 2 510.28509521484375 MULTI HCD FTMS 0 0 0 7495 64528.7890625 0.47744429006875694 3 -0.07275772094726562 4 Unmodified _VYANGIRNI_ ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 48.345845343767074 0.03388484103555672 1 [YV]AG{[QV]|[N{I|L}]|[RA]|[KV]}R{[QV]|[N{I|L}]|[RA]|[KV]} 9 2 + 48.139 0 0 4.7262 4.7262 84.437 0 0 0 0.7037091163776665 32.654171688421556 0.7037091163776665 7.983324797206279 0 1.5 1.6989700043360187 0 0.3807196863200844 [YV]AG{[QV]|[N{I|L}]|[RA]|[KV]}R{[QV]|[N{I|L}]|[RA]|[KV]};[YV]Q{[QV]|[N{I|L}]|[RA]|[KV]}R{[QV]|[N{I|L}]|[RA]|[KV]};[YV]AG{[QV]|[N{I|L}]|[RA]|[KV]}[VG]{[QV]|[N{I|L}]|[RA]|[KV]};[YV]Q{[QV]|[N{I|L}]|[RA]|[KV]}[VG]{[QV]|[N{I|L}]|[RA]|[KV]} 4.7262;3.9424;3.8221;3.033 -;-;-;- 63 NaN NaN 100831 NaN 5255 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7500 40.691 NaN 332850 35 0 57095 0.261 + 25262 SATVKDYEL 9 52 513.2613448414348 1024.5081367496696 2 513.2608032226562 MULTI HCD FTMS 0 0 0 7495 136554.875 0.15918557134272404 -5 0.15924453735351562 5 Unmodified _SATVKDYEL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 83.42873516780209 0.004742894019233849 1 {[SA]|[TG]}TVK{[YD]|[{M(Oxidation (M))|F}M]}E{I|L} 9 0 + 55.089 0 0 5.3771 5.3771 89.738 0 0 0 7.147642715192504 39.37076236157729 7.147642715192504 18.53794667124717 0 2.055462187404089 0 1.5994850021680094 0 + + {[SA]|[TG]}TVK{[YD]|[{M(Oxidation (M))|F}M]}E{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VK{[YD]|[{M(Oxidation (M))|F}M]}E{I|L};{[TV]|[{I|L}S]}{[SA]|[TG]}K{[YD]|[{M(Oxidation (M))|F}M]}E{I|L};{[SA]|[TG]}TV{[DA]|[EG]}[{M(Oxidation (M))|F}T]T{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VW[{M(Oxidation (M))|F}T]T{I|L};{[SA]|[TG]}T[Y{I|L}][QT]E{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[MG]|[TS]}{I|L}[MN]{I|L} 5.3771;3.5677;2.5417;2.362;2.265;1.4392;0.52121 +;-;-;-;-;-;- + 180 NaN NaN 135509.1 NaN 5256 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7501 40.695 NaN 229120 35 0 42124 0.261 + 26184 SPQAEQPSL 9 48 478.7378207511339 955.4610885690678 2 478.73773193359375 MULTI HCD FTMS 0 0 0 7495 74309.2734375 0.6082919186137608 -2 0.0663909912109375 6 Unmodified _SPQAEQPSL_ ENSG00000091732|ENST00000358303|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;nc|ENSG00000091732|Q86WB0-3|ZC3HC1 36.506200033944 0.08138327636155518 1 {I|L}{[DS]|[MA]|[CV]|TT}QE 5 7 37.747 0 0 3.9507 0 0 0 380.1567476861938 380.1567476861938 18.08159703347442 0 0 0 0 1 0 1.1549471895720984 0 {I|L}{[DS]|[MA]|[CV]|TT}QE 3.9507 - 101 + NaN NaN 119282 NaN 5257 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7502 40.698 NaN 523590 35 0 48838 0.261 + 14211 LATKTEVAL 9 60 473.2845218415903 944.5544907499806 2 473.28424072265625 MULTI HCD FTMS 0 0 0 7495 196876.90625 0.0999764343543632 -5 0.15924453735351562 7 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 63.960520009940105 0.0120409805053046 1 {I|L}ATK{[ET]|[MV]}VA{I|L} 9 0 + 78.311 0 0 8.2908 8.2908 95.308 0 0 0 70.35212480354062 10.642492736872597 10.642492736872597 22.9390028798052 0 2.048455006504028 1.5228787452803376 0.8494850021680094 0 + + {I|L}ATK{[ET]|[MV]}VA{I|L};[{I|L}A]T[TA][VS]VA{I|L};[{I|L}A]T[VG]{[DS]|[MA]|[CV]|TT}VA{I|L};[{I|L}A]T[TA][VS]AV{I|L};[{I|L}A]T[VG]{[DS]|[MA]|[CV]|TT}AV{I|L};[{I|L}A][HK]{[HG]|PP}VA{I|L};[{I|L}A][HK]{[HG]|PP}AV{I|L};[{I|L}A][HK][HQ]V{I|L};[{I|L}A][KQ]HHV{I|L} 8.2908;5.8622;5.6758;4.8319;4.6455;3.7899;2.8392;1.9427;1.8719 +;-;-;-;-;-;-;-;- + 322 + NaN NaN 169732.3 NaN 5258 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7503 40.701 NaN 242800 35 0 53047 0.261 + 35392 YYEEQHPEL 9 48 604.2670896750219 1206.5196264168437 2 604.266845703125 MULTI HCD FTMS 0 0 0 7495 55796.08984375 0.02424936168480118 -7 0.2089691162109375 8 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 71.70789743142352 0.008535567138151097 1 YYEEQH 6 3 91.988 0 0 7.6242 0 0 0 354.16620813541255 354.16620813541255 81.81031895404267 0 0 0 0 2.079689690656103 2 0.805462187404089 0.3494850021680094 + YYEEQH 7.6242 + + 128 + NaN NaN 126766.6 NaN 5259 2242 7495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7505 40.706 NaN 246420 35 0 34261 0.327 + 34407 YPESESIMM 9 43 559.722735449113 1117.4309179650259 2 559.72265625 MULTI HCD FTMS 0 0 0 7504 125376.4375 0.36963315987860473 6 -0.15875244140625 1 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 61.357469665136826 0.01568246967499496 1 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 72.384 0 0 6.4777 0 0 389.15818984199376 0 389.15818984199376 0 62.91956270212445 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.4777 + + 178 NaN NaN 133891.9 NaN 5260 2243 7504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7506 40.711 NaN 190870 35 0 29020 0.261 + 11894 KFIDTTSKF 9 49 543.79515636783 1085.57575980246 2 543.7951049804688 MULTI HCD FTMS 0 0 0 7504 158172.890625 0.01854893508577714 43 -1.1658821105957031 2 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 75.5705956163825 0.007285660612518157 1 D{[DS]|[MA]|[CV]|TT}SK{M(Oxidation (M))|F} 6 3 56.758 0 0 5.2283 0 0 388.24837418489534 0 388.24837418489534 0 29.974702404264022 0 0 0 2.3494850021680094 0 0.7614393726401688 0.3252574989159953 + D{[DS]|[MA]|[CV]|TT}SK{M(Oxidation (M))|F} 5.2283 + + 153 NaN NaN 119875.8 NaN 5261 2243 7504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7507 40.714 NaN 225470 35 0 24680 0.261 + 15313 LPAPPTQNM 9 61 492.74470632206595 983.4748597109319 2 492.7444763183594 MULTI HCD FTMS 0 0 0 7504 105698.9765625 0.9437632449430302 2 -0.0429229736328125 3 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ ENSG00000141380|ENST00000415083|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant 103.74828524460852 0.00396301343438984 1 [{I|L}P]APPTQN{M(Oxidation (M))|F} 9 0 [{I|L}P]A + + 55.979 22.676 8.0648 5.692 5.692 62.791 0 0 0 0 33.30320662047981 0 0 0 2.017220322351953 0 0.3252574989159953 1.316901560044258 + + [{I|L}P]APPTQN{M(Oxidation (M))|F} 5.692 + + 182 + NaN NaN 117743.7 NaN 5262 2243 7504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7508 40.718 NaN 277180 35 0 23680 0.261 + 9410 HPTTTEYTF 9 67 548.7509367541168 1095.4873205750334 2 548.7510375976562 MULTI HCD FTMS 0 0 0 7504 72708.828125 0.542951213015152 2 -0.0429229736328125 4 Unmodified _HPTTTEYTF_ L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense 42.09456458481378 0.05572955244001856 1 MSNT[QT]TN{[TV]|[{I|L}S]} 10 7 + 53.211 0 0 4.8573 4.8573 85.263 0 0 0 6.0403972069151735 10.904112767164733 6.0403972069151735 9.164539485499255 0 0 0 1.2856668758921828 0.6989700043360187 MSNT[QT]TN{[TV]|[{I|L}S]};MSGGT[QT]TN{[TV]|[{I|L}S]};MSNT[QT]TGG{[TV]|[{I|L}S]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]E[HM]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]ETN{[CP]|[EA]};{[HG]|PP}[{I|L}P]EE{[YD]|[{M(Oxidation (M))|F}M]}H;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]ETGG{[CP]|[EA]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]E{[YD]|[{M(Oxidation (M))|F}M]}H;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]E{[{M(Oxidation (M))|F}H]|[RQ]}M;{[TV]|[{I|L}S]}DT[{M(Oxidation (M))|F}V]{[YD]|[{M(Oxidation (M))|F}M]}H 4.8573;4.0207;3.3827;2.1391;1.6517;0.9414;0.81117;0.78558;0.62484;0.25565 -;-;-;-;-;-;-;-;-;- 711 + NaN NaN 145528.9 NaN 5263 2243 7504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7509 40.721 NaN 377470 35 0 129440 0.262 + 8264 GTLLDAIIC 9 43 459.7508973194392 NaN 0 459.7610168457031 PEAK HCD FTMS 0 0 0 7504 8325.34765625 0.783777382979811 -1 0.029834747314453125 5 Unmodified _GTLLDAIIC_ ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-2|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB 8.593279151180031 0.2536050107310812 1 D 1 8 8.2268 0 0 0.89667 0 0 384.2275590070844 415.20810877017817 799.4356677772626 0 0 0 0 0 0 0 0.4247425010840047 0 + D 0.89667 + + 4 + NaN NaN 152396.2 NaN 5264 2243 7504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7511 40.726 NaN 403240 35 0 40274 0.327 + 22121 QIIEKDAAL 9 62 500.78759781232725 999.5606426914545 2 500.7873840332031 MULTI HCD FTMS 0 0 0 7510 291182.1875 0.9659903608617272 -1 0.01983642578125 1 Unmodified _QIIEKDAAL_ ENSG00000155868|ENST00000286317|MED7 39.94969957227396 0.06557568441294001 1 AADKE{I|L} 6 7 31.138 0 0 3.1152 0 0 149.10362472446076 220.1092470758422 369.212871800303 0 0 0 0 0 0 0 0.7302046884880937 0.6747425010840047 AADKE{I|L} 3.1152 - 249 + NaN NaN 146411.7 NaN 5265 2244 7510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7512 40.731 NaN 286060 35 0 21615 0.261 + 13080 KYLEETNSL 9 72 548.7805809922456 1095.5466090512912 2 548.7794799804688 MULTI HCD FTMS 0 0 0 7510 115064.1484375 0.7633075224930983 -2 0.049671173095703125 2 Unmodified _KYLEETNSL_ ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3 88.36371040165146 0.004568843997105255 1 EETNS{I|L} 6 3 61.865 0 0 5.6469 0 0 404.24214776991676 0 404.24214776991676 0 35.31000522516577 0 0 0 2.0356668758921828 0 0.6382104921644451 0 + EETNS{I|L} 5.6469 + + 351 NaN NaN 127525.9 NaN 5266 2244 7510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7513 40.734 NaN 346900 35 0 66084 0.261 -1 0 36 638.3204419905012 1274.6263310478023 2 638.3203735351562 MULTI HCD FTMS 0 0 0 7510 121691.3515625 0.20708843566283963 -5 0.145904541015625 3 NaN NaN 1 E[PA]NQE{I|L} 7 -1 64.781 0 0 5.0823 0 0 475.2538319318375 0 475.2538319318375 0 54.323354237895884 0 0 0 2.305462187404089 0 0.4247425010840047 0.4247425010840047 E[PA]NQE{I|L} 5.0823 - 215 NaN NaN 137240.2 NaN 5267 2244 7510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7514 40.737 NaN 131870 35 0 24865 0.261 + 24799 RYPDSHQLF 9 30 581.7858674641855 1161.5571819951708 2 581.78564453125 MULTI HCD FTMS 0 0 0 7510 59514.9765625 0.698800752012468 -4 0.11606216430664062 4 Unmodified _RYPDSHQLF_ ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 14.405379775768559 0.2358970535022398 1 [YR][DP][HS]Q{I|L}{M(Oxidation (M))|F} 9 0 + 35.391 0 0 3.0469 3.0469 88.173 0 0 0 4.946049681132941 28.401662231496736 4.946049681132941 35.391362274856924 0 0.9247425010840047 0 0 0 + + [YR][DP][HS]Q{I|L}{M(Oxidation (M))|F} 3.0469 + + 24 NaN NaN 118755.1 NaN 5268 2244 7510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7515 40.741 NaN 23128 35 0 6179.3 0.261 + 8190 GQKQWQSYF 9 14 586.2802362949484 1170.5459196566967 2 586.280517578125 MULTI HCD FTMS 0 0 0 7510 8712.2353515625 0.4424043594339139 1 -0.0230865478515625 5 Unmodified _GQKQWQSYF_ ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI 1.6526216038709556 0.33848895094777925 1 S[Y{M(Oxidation (M))|F}] 3 6 10.458 0 0 0.89339 0 0 755.3693104474625 0 755.3693104474625 0 10.45757490560675 0 0 0 0 0 0 0 + S[Y{M(Oxidation (M))|F}] 0.89339 + + 1 NaN NaN 82079.9 NaN 5269 2244 7510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7516 40.744 NaN 37783 35 0 10947 0.261 + 17654 LYYTNKQHK 9 19 597.8152163227822 1193.6158797123644 2 597.813720703125 MULTI HCD FTMS 0 0 0 7510 10464.158203125 0.1072845365901483 41 -1.116424560546875 6 Unmodified _LYYTNKQHK_ REV__ENST00000281182.8_1_11:134134959-134135112:+|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87764.9 NaN 5270 2244 7510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7518 40.749 NaN 116260 35 0 23219 0.327 -1 DMHTEVTTL 9 31 531.7421757598927 1061.4697985865853 2 531.7421875 MULTI HCD FTMS 0 0 0 7517 48032.25 0.07876826019858618 -18 0.4959716796875 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 26.88365393820708 0.12808753336095696 1 TT{I|L} 3 -1 44.693 0 0 4.2105 0 0 728.2792388088506 0 728.2792388088506 0 33.455612550363796 0 0 0 1 0 0.8494850021680094 0 TT{I|L} 4.2105 + + 12 NaN NaN 94960.8 NaN 5271 2245 7517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7519 40.754 NaN 118140 35 0 9422 0.263 + 11940 KFIWTNHKF 9 57 407.55733180093375 1219.6501660030012 3 407.5575256347656 MULTI HCD FTMS 0 0 0 7517 63635.3046875 0.2536121423679528 30 -0.8402976989746094 2 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 6.2057823575117 0.30397260197431997 1 K{M(Oxidation (M))|F} 2 7 24.776 0 0 2.0314 0 0 0 941.4636993793588 941.4636993793588 11.677353201839438 0 0 0 0 0.3807196863200844 0 0 0 + K{M(Oxidation (M))|F} 2.0314 + + 10 + NaN NaN 105619.6 NaN 5272 2245 7517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7520 40.757 NaN 79510 35 0 14092 0.261 -1 RCCMHRWPV 9 28 439.8630075461556 1316.5671932386667 3 439.86297607421875 MULTI HCD FTMS 0 0 0 7517 27006.71484375 0.533631867499549 9 -0.26251983642578125 3 2 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))C(Carbamidomethyl (C))M(Oxidation (M))HRWPV_ ENSG00000146221|ENST00000371505|TCTE1 1.1933415558491238 0.3419706357095994 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 87772.2 NaN 5273 2245 7517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7521 40.761 NaN 41612 35 0 5058.9 0.261 -1 EPQSTCEL 8 24 482.208374172576 962.402195411952 2 482.20849609375 MULTI HCD FTMS 0 0 0 7517 10292.458984375 0.6080869180409401 1 -0.023189544677734375 4 Carbamidomethyl (C) _EPQSTC(Carbamidomethyl (C))EL_ ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L 3.944395688203298 0.5361403129012058 1 E{I|L} 2 -1 18.583 0 0 1.9309 0 0 702.26469618965 0 702.26469618965 0 18.58349385648225 0 0 0 0 0 0 0 E{I|L} 1.9309 + + 3 NaN NaN 89754.3 NaN 5274 2245 7517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7522 40.764 NaN 71870 35 0 5856.8 0.261 + 4326 EVTPVTGASLR 11 40 565.3142882718003 1128.6140236104004 2 565.314453125 MULTI HCD FTMS 0 0 0 7517 15311.4580078125 0.382608074126379 -2 0.0429229736328125 5 Unmodified _EVTPVTGASLR_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 7.477065608646677 0.3861287967437539 1 {NN|[MP]|[D{I|L}]|[EV]}T[VP]TGA 8 3 15.864 0 0 1.4056 0 0 0 371.2050875299438 371.2050875299438 10.379099962974154 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}T[VP]TGA 1.4056 + + 38 + NaN NaN 93832.4 NaN 5275 2245 7517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7523 40.767 NaN 91472 35 0 7767.4 0.264 + 24870 RYQEMIQKL 9 49 403.553488050143 1207.638634750629 3 403.5537414550781 MULTI HCD FTMS 0 0 0 7517 20084.9296875 0.9899671746455568 -2 0.0429229736328125 6 Unmodified _RYQEMIQKL_ ENSG00000151466|ENST00000281142|SCLT1;ENST00000502495.1_1_4:129805634-129873545:-|nuORF 8.444304893310646 0.2870029342618836 1 M 1 8 11.99 0 0 0.99282 0 0 500.3320074086353 573.24339270287 1073.5754001115054 0 0 0 0 0 0.5 0 0 0 + M 0.99282 + + 8 + NaN NaN 98030.6 NaN 5276 2245 7517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7525 40.772 NaN 55923 35 0 9507.4 0.327 + 21109 PNRTETAL 8 32 451.2404137672702 900.4662746013404 2 451.2400817871094 MULTI HCD FTMS 0 0 0 7524 30530.03125 0.44993486161475266 4 -0.12910079956054688 1 Unmodified _PNRTETAL_ REV__ENSG00000120549|ENST00000376454|KIAA1217;REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 7.289230182591677 0.5311777711368266 1 A{I|L} 2 -1 25.969 0 0 2.884 0 0 698.3355120553384 0 698.3355120553384 0 25.026975159433533 0 0 0 0.5 0 0 0 A{I|L} 2.884 + + 14 NaN NaN 88100.1 NaN 5277 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7526 40.777 NaN 70192 35 0 9200.1 0.261 -1 RYQQWMERF 9 38 453.88009176156794 1358.6184458849038 3 454.21490478515625 MULTI HCD FTMS 0 0 0 7524 16343.470703125 0.24137168031828377 22 -0.6228065490722656 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 9.5439744041441 0.27789851728676895 1 W 1 -1 14.732 0 0 1.0843 0 0 597.2587479877835 572.2583598375328 1169.5171078253163 0 0 0 0 0 0.9247425010840047 0 0 0 W 1.0843 + + 4 + NaN NaN 89265.5 NaN 5278 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7527 40.78 NaN 57643 35 0 13382 0.261 + 18636 MYDDIAHS 8 23 476.1981833591701 NaN 0 476.1977233886719 PEAK HCD FTMS 0 0 0 7524 9932.8818359375 0.3326493561046807 -35 0.9807395935058594 3 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 {I|L} 1 7 3.0989 0 0 0.32607 0 0 493.13887662869337 341.1369722955688 834.2758489242622 0 0 0 0 0 0 0 0 0 + {I|L} 0.32607 + + 3 + NaN NaN 88812 NaN 5279 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7528 40.784 NaN 71252 35 0 6816.1 0.261 + 4327 EVTPVTGASLR 11 30 565.3142882718003 1128.6140236104004 2 565.3129272460938 MULTI HCD FTMS 0 0 0 7524 29444.7421875 0.7357755280887602 -1 0.023189544677734375 4 Unmodified _EVTPVTGASLR_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 19.625955294349634 0.28608081981942357 1 {NN|[MP]|[D{I|L}]|[EV]}T[VP]TQ 7 5 23.6 0 0 2.0911 0 0 0 371.20466028385005 371.20466028385005 12.173713282898929 0 0 0 0 0.7614393726401688 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}T[VP]TQ 2.0911 - 29 + NaN NaN 99901 NaN 5280 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7529 40.787 NaN 83653 35 0 12159 0.264 -1 0 34 421.5752409833658 1261.7038935502974 3 421.5751037597656 MULTI HCD FTMS 0 0 0 7524 10491.0830078125 0.39027267906806556 -8 0.22533035278320312 5 NaN NaN 1 Y 1 -1 5.4846 0 0 0.43469 0 0 518.4169805637724 577.2022188775999 1095.6191994413723 0 0 0 0 0 0 0 0 0 Y 0.43469 - 2 + NaN NaN 95036.9 NaN 5281 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7530 40.79 NaN 51198 35 0 8569.2 0.261 + 34810 YREIHDTTL 9 26 574.29089224354 NaN 0 574.2924194335938 PEAK HCD FTMS 0 0 0 7524 20641.49609375 0.6461626297268978 12 -0.3487396240234375 6 Unmodified _YREIHDTTL_ REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant;REV__ENSG00000137628|ENST00000393743|DDX60 8.745405648335112 0.25286782695573473 1 {I|L} 1 -1 11.237 0 0 0.98007 0 0 119.06769329160427 911.401938141579 1030.4696314331832 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.98007 + + 2 + NaN NaN 96589.1 NaN 5282 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7531 40.794 NaN 43769 35 0 6528 0.264 + -1 RRIVVYFKM 9 30 409.9057410070015 NaN 0 409.9060363769531 PEAK HCD FTMS 0 0 0 7524 11129.08984375 0.7700905442874496 19 -0.5369491577148438 7 Oxidation (M) _RRIVVYFKM(Oxidation (M))_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 1.0714618166137932 0.2900546878344058 1 P 1 -1 1.5938 0 0 0.19489 0 0 480.4642702446686 237.2515810602172 717.7158513048859 0 0 0 0 0 0 0 0 0 P 0.19489 - 4 + NaN NaN 93687.5 NaN 5283 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7532 40.797 NaN 17942 35 0 6662.2 0.261 -1 EVFYHYCR 8 18 587.2614933560795 1172.508433778959 2 587.2581176757812 MULTI HCD FTMS 0 0 0 7524 3661.880126953125 0.14298354686371312 14 -0.3881950378417969 8 Carbamidomethyl (C) _EVFYHYC(Carbamidomethyl (C))R_ ENST00000462577.5_1_10:112654240-112655713:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84227 NaN 5284 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7533 40.8 NaN 11385 35 0 4443.4 0.261 + -1 PCDYCLGPCL 10 10 627.7529951553859 NaN 0 627.8209838867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 3 Carbamidomethyl (C) _PC(Carbamidomethyl (C))DYC(Carbamidomethyl (C))LGPC(Carbamidomethyl (C))L_ REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91638.9 NaN 5285 2246 7524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7535 40.806 NaN 791500 35 0 291170 0.327 + 10552 IPIHADPRL 9 40 516.3035336607867 1030.5925143883733 2 516.30322265625 MULTI HCD FTMS 0 0 0 7534 315729.6875 0.921910170389158 2 -0.0595245361328125 1 Unmodified _IPIHADPRL_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 22.736283301280096 0.1639198954644489 1 [{I|L}P]{I|L}H{[DA]|[EG]}{I|L}[RP] 9 2 + 32.866 0 0 3.189 3.189 88.125 0 0 0 23.869317834433026 5.6424927368726046 5.6424927368726046 32.86561238325739 0 1.274227503252014 0 0 0 [{I|L}P]{I|L}H{[DA]|[EG]}{I|L}[RP] 3.189 - 102 + NaN NaN 199477.8 NaN 5286 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7536 40.81 NaN 319930 35 0 120920 0.261 + 8496 HADQEYVL 8 30 487.73268452094294 973.4508161086859 2 487.732421875 MULTI HCD FTMS 0 0 0 7534 160183.421875 0.7341841836572828 3 -0.09598541259765625 2 Unmodified _HADQEYVL_ ENSG00000112249|ENST00000369162|ASCC3 10.823927491677226 0.514154816617796 1 YV{I|L} 3 5 35.005 0 0 3.596 0 0 580.2230091779312 0 580.2230091779312 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0 + YV{I|L} 3.596 + + 14 NaN NaN 134085 NaN 5287 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7537 40.813 NaN 203840 35 0 15493 0.261 + 4611 EYLTKVDKL 9 50 554.8161976461816 1107.6178423591632 2 554.8161010742188 MULTI HCD FTMS 0 0 0 7534 129454.8125 0.5512405878643089 3 -0.09598541259765625 3 Unmodified _EYLTKVDKL_ ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 63.227496030279354 0.01306643085373406 1 EY{I|L}TKVDK{I|L} 9 0 + 81.538 0 0 7.3615 7.3615 94.523 0 0 0 51.09243748081781 9.889917747712644 9.889917747712644 32.78659694992122 0 1.1861818737241734 2 0.7614393726401688 0 + + EY{I|L}TKVDK{I|L};{I|L}[YE]TKVDK{I|L};[KT][Q{I|L}]T{I|L}[YE]{I|L};[KT][Q{I|L}]{I|L}T[YE]{I|L} 7.3615;4.4014;1.2478;0.7952 +;-;-;- + 200 + NaN NaN 114074.8 NaN 5288 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7538 40.817 NaN 318870 35 0 43685 0.261 + 813 AVIEAEHTL 9 57 491.7634958604173 981.5124387876347 2 491.7626953125 MULTI HCD FTMS 0 0 0 7534 122082.1015625 0.8764953108523479 -1 0.033115386962890625 4 Unmodified _AVIEAEHTL_ ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77561342-77561690:+|nuORF;ENST00000485081.5_1_1:182847108-182856566:+|nuORF 85.27202061508552 0.004649858145912257 1 {[VA]|[{I|L}G]}{I|L}EAEHT{I|L} 9 0 + 76.833 0 0 7.828 7.828 95.422 0 0 0 10.585908507588755 53.187587626244124 10.585908507588755 36.020599913279625 0 2.6989700043360187 1.6989700043360187 0 0 + + {[VA]|[{I|L}G]}{I|L}EAEHT{I|L};{[QN]|[E{I|L}]|[KN]}AVAEHT{I|L};{[VA]|[{I|L}G]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}[WP]{I|L};{[QN]|[E{I|L}]|[KN]}ATHE{I|L}G{I|L};{[QN]|[E{I|L}]|[KN]}ATH[TP]T{I|L} 7.828;4.1581;3.8333;2.1886;1.4589 +;-;-;-;- + 226 NaN NaN 131674 NaN 5289 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7539 40.82 NaN 55836 35 0 14503 0.261 -1 AVGIWHCGSCM 11 20 618.7508349289911 1235.4871169247822 2 619.2357788085938 MULTI HCD FTMS 0 0 0 7534 9107.984375 0.7417868642161322 -1 0.033115386962890625 5 Carbamidomethyl (C),Oxidation (M) _AVGIWHC(Carbamidomethyl (C))GSCM(Oxidation (M))_ ENSG00000197756|ENST00000491306|RPL37A;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000478153.1_1_2:217363923-217364755:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF 1.3295316138638542 0.4130897924953357 1 P 1 -1 6.9897 0 0 0.56574 0 0 130.06727879959368 1005.3387545221311 1135.4060333217249 0 0 0 0 0 0 0 0 0 P 0.56574 - 3 + NaN NaN 94628.5 NaN 5290 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7540 40.823 NaN 64174 35 0 6205 0.262 + 32105 VYSCMRDF 8 30 510.71727379493444 1019.4199946566689 2 510.7174072265625 MULTI HCD FTMS 0 0 0 7534 21308.98828125 0.41776208801513687 4 -0.11910247802734375 6 Unmodified _VYSCMRDF_ ENST00000561210.1_1_15:54556427-54709226:+|nuORF 12.531546534597751 0.5015908124873912 1 QP{M(Oxidation (M))|F} 3 7 27.167 0 0 2.6649 0 0 629.2306365329492 0 629.2306365329492 0 12.390690719683093 0 0 0 1 0 0 0 QP{M(Oxidation (M))|F} 2.6649 - 47 + NaN NaN 89086.2 NaN 5291 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7541 40.827 NaN 76358 35 0 22580 0.262 + 29830 VERNLIKNNL 10 29 404.90665018919964 1211.698121167799 3 404.9065856933594 MULTI HCD FTMS 0 0 0 7534 17097.890625 0.9060215765552898 1 -0.036388397216796875 7 Unmodified _VERNLIKNNL_ REV__ENSG00000178966|ENST00000445877|RMI1 3.5870582119611467 0.4563168352879256 1 {[TV]|[{I|L}S]}W 3 -1 8.072 0 0 0.66617 0 0 0 822.4838627051614 822.4838627051614 2.5874185669681555 0 0 0 0 0 0 0 0 {[TV]|[{I|L}S]}W 0.66617 - 9 NaN NaN 108616.9 NaN 5292 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7542 40.83 NaN 17274 35 0 3866.8 0.261 + 20690 PFPLMYSYY 9 13 590.7729383668844 1179.5313238005688 2 590.2857055664062 MULTI HCD FTMS 0 0 0 7534 13343.986328125 0.40206723160663266 20 -0.5632781982421875 8 Unmodified _PFPLMYSYY_ ENSG00000147036|ENST00000378619|LANCL3;nc|ENSG00000147036|Q6ZV70-2|LANCL3 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91082.6 NaN 5293 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7543 40.833 NaN 22847 35 0 5636.4 0.261 + -1 CKDPGFMIIY 10 16 601.7827130673791 1201.550873201558 2 601.7824096679688 MULTI HCD FTMS 0 0 0 7534 14279.9306640625 0.043737518221661546 19 -0.536895751953125 9 Oxidation (M) _CKDPGFM(Oxidation (M))IIY_ REV__ENSG00000153132|ENST00000325617|CLGN 1.844237919475145 0.46554186016084764 1 Y 1 -1 14.604 0 0 1.2154 0 0 1020.4769881691346 0 1020.4769881691346 0 -3.3547064036788754 -3.3547064036788754 0 0 0 0 0 0 Y 1.2154 + + 1 + NaN NaN 84219.7 NaN 5294 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7544 40.837 NaN 80305 35 0 27187 0.262 + 3107 EALGSGLVSR 10 32 494.7744912926436 NaN 0 494.77471923828125 PEAK HCD FTMS 0 0 0 7534 14404.1416015625 0.965346374921667 -5 0.12906265258789062 10 Unmodified _EALGSGLVSR_ ENSG00000104823|ENST00000221418|ECH1 2.498486711656943 0.3380459306859131 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91938.6 NaN 5295 2247 7534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7546 40.842 NaN 927830 35 0 154750 0.327 + 25263 SATVKDYEL 9 72 513.2613448414348 1024.5081367496696 2 513.2611694335938 MULTI HCD FTMS 0 0 0 7545 711502.125 0.8294165424682733 1 -0.023136138916015625 1 Unmodified _SATVKDYEL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 103.82355648334675 0.003950725192926219 1 {[SA]|[TG]}TVKDYE{I|L} 9 0 + 86.213 0 0 8.4151 8.4151 96.015 0 0 0 7.147642715192504 57.84318117920506 7.147642715192504 29.75895023531386 0 2.5669015600442577 0 1.9731975075880328 0 + + {[SA]|[TG]}TVKDYE{I|L};{[TV]|[{I|L}S]}{[SA]|[TG]}KDYE{I|L};{[SA]|[TG]}T{M(Oxidation (M))|F}E[KT]E{I|L};{[SA]|[TG]}T{M(Oxidation (M))|F}E{I|L}S{[SA]|[TG]}{I|L};{[TV]|[{I|L}S]}K{[SA]|[TG]}DYE{I|L};{[SA]|[TG]}T{M(Oxidation (M))|F}E{[ET]|[MV]}K{I|L};{[SA]|[TG]}T{M(Oxidation (M))|F}E{I|L}S{I|L}{[SA]|[TG]};{[SA]|[TG]}T{M(Oxidation (M))|F}E{I|L}{[ET]|[MV]}K;{[SA]|[TG]}T{M(Oxidation (M))|F}E{[ET]|[MV]}{I|L}K;[YE]DK[KT]E{I|L} 8.4151;5.5104;4.8526;4.4668;3.9466;3.907;3.8057;3.1256;2.8927;2.705 +;-;-;-;-;-;-;-;-;- + 646 NaN NaN 230771.4 NaN 5296 2248 7545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7547 40.846 NaN 122340 35 0 20242 0.261 + 5642 FMPHQPSL 8 48 478.7378207511339 955.4610885690678 2 478.7375183105469 MULTI HCD FTMS 0 0 0 7545 48002.1015625 0.3929427527171915 4 -0.11251449584960938 2 Unmodified _FMPHQPSL_ ENST00000396987.7_1_8:41479703-41480342:+|nuORF 7.910154910731844 0.5302565402355366 1 PERQ 4 7 31.67 0 0 3.3146 0 0 130.02488359035527 312.1561828587747 442.18106644912996 0 0 0 0 0 1 0 0.4247425010840047 0 PERQ 3.3146 - 60 + NaN NaN 106210.2 NaN 5297 2248 7545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7548 40.85 NaN 118370 35 0 11760 0.261 + 25583 SFSYGYIRQ 9 53 560.7764879846692 NaN 0 560.7656860351562 PEAK HCD FTMS 0 0 0 7545 5935.599609375 0.29993424007612873 21 -0.579620361328125 3 Unmodified _SFSYGYIRQ_ REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 7.910154910731844 0.25691533546754686 1 VHY 3 -1 13.812 0 0 1.2337 0 0 234.12709593990422 483.2016695611938 717.328765501098 0 0 0 0 0 0 0 0 0 VHY 1.2337 - 42 + NaN NaN 112737.3 NaN 5298 2248 7545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7549 40.853 NaN 147260 35 0 27142 0.264 + 8249 GSWNPASL 8 47 416.20324310780865 NaN 0 416.2146301269531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _GSWNPASL_ nc|ENSG00000147475|O94905-3|ERLIN2 2.302733041254933 0.38822285293237185 1 Y 1 8 3.9794 0 0 0.47922 0 0 532.2606599443299 132.04546533756096 664.3061252818908 0 0 0 0 0 0 0 0 0 Y 0.47922 - 3 + NaN NaN 105226.3 NaN 5299 2248 7545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7550 40.857 NaN 62150 35 0 11741 0.261 -1 CFCGHYCQW 9 27 630.7230188174265 1259.4314847016528 2 630.7222290039062 MULTI HCD FTMS 0 0 0 7545 27753.197265625 1 0 0 5 2 Carbamidomethyl (C) _CFC(Carbamidomethyl (C))GHYC(Carbamidomethyl (C))QW_ ENST00000491730.5_1_3:113251655-113300327:+|nuORF 0.5247636613948944 0.34703895399870666 1 Y 1 -1 6.9897 0 0 0.55499 0 0 207.04728167606532 886.2938687748652 1093.3411504509306 0 0 0 0 0 0 0 0 0 Y 0.55499 + + 2 + NaN NaN 95219.1 NaN 5300 2248 7545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7551 40.86 NaN 132250 35 0 20687 0.263 + 3149 EASKKYDAV 9 42 505.760480578466 1009.506408223732 2 505.71746826171875 MULTI HCD FTMS 0 0 0 7545 3009.096923828125 0.5737669439217418 4 -0.11251449584960938 6 Unmodified _EASKKYDAV_ REV__ENSG00000139547|ENST00000398138|RDH16 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117924.8 NaN 5301 2248 7545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7553 40.865 NaN 3439000 35 0 733250 0.327 + 35393 YYEEQHPEL 9 107 604.2670896750219 1206.5196264168437 2 604.267333984375 MULTI HCD FTMS 0 0 0 7552 2300930.25 1 0 0 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 201.56835220063672 1.5491848823648643E-17 1 YYEEQHPE{I|L} 9 0 + 105.15 0 0 8.715 8.715 95.54 0 0 0 4.11159286695316 29.16025464051367 4.11159286695316 19.45046257204389 0 2.4247425010840047 2 1.2856668758921828 1.024227503252014 + + YYEEQHPE{I|L};YYEE[AG]HPE{I|L};[YE]YEQHPE{I|L};EEYYQHPE{I|L};[YE]EYQHPE{I|L};[YE]YE[AG]HPE{I|L};[EP]H{I|L}EQEYY;YYETQ{NN|[MP]|[D{I|L}]|[EV]}Y{I|L};[EP]{I|L}HEQEYY;EEQYYHPE{I|L} 8.715;7.1029;6.3934;5.9724;5.5635;4.7813;4.5277;4.5021;4.4696;4.4606 +;-;-;-;-;-;-;-;-;- + 6394 NaN NaN 624218.7 NaN 5302 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7554 40.869 NaN 1717700 35 0 164300 0.263 + 14212 LATKTEVAL 9 84 473.2845218415903 944.5544907499806 2 473.284423828125 MULTI HCD FTMS 0 0 0 7552 1618191 0.8217366341529523 2 -0.05957794189453125 2 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 117.76058876431921 0.001675465467887476 1 {I|L}ATKTEVA{I|L} 9 0 + 110.61 0 0 11.71 11.71 93.087 0 0 0 74.4812969097282 14.09256854528806 14.09256854528806 8.182503180159344 0 2.9604093769761874 1.5228787452803376 1.274227503252014 0 + + {I|L}ATKTEVA{I|L};[{I|L}A]TKTEVA{I|L};[{I|L}A]TKTEAV{I|L};[{I|L}A]TKTEG{I|L}{I|L};[{I|L}A]TKTD{I|L}A{I|L};[{I|L}A]TKTEA{I|L}V;[{I|L}A]TKTDA{I|L}{I|L};[KT]A{I|L}TEVA{I|L};[KT]A{I|L}TEAV{I|L};[KT]A{I|L}TEG{I|L}{I|L} 11.71;10.844;9.776;9.7666;9.6073;8.6031;8.5303;8.1997;7.1321;7.1227 +;+;-;-;-;-;-;-;-;- + 1932 + NaN NaN 349032 NaN 5303 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7555 40.873 NaN 153710 35 0 14977 0.261 + 22122 QIIEKDAAL 9 47 500.78759781232725 999.5606426914545 2 500.7873840332031 MULTI HCD FTMS 0 0 0 7552 118568.09375 0.3933469854444637 4 -0.1191558837890625 3 Unmodified _QIIEKDAAL_ ENSG00000155868|ENST00000286317|MED7 27.628801355627647 0.12213550946336599 1 [Q{I|L}][SG]E{I|L}[Q{I|L}]{I|L} 9 6 + 26.154 0 0 2.6165 2.6165 87.377 0 0 0 0.2630286728749134 7.129931856201427 0.2630286728749134 26.15365386032288 0 0.5 1.2218487496163564 0.3054621874040891 0.5 [Q{I|L}][SG]E{I|L}[Q{I|L}]{I|L} 2.6165 - 101 NaN NaN 99376.7 NaN 5304 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7556 40.876 NaN 152670 35 0 20993 0.261 + 11895 KFIDTTSKF 9 41 543.79515636783 1085.57575980246 2 543.7951049804688 MULTI HCD FTMS 0 0 0 7552 120374.2109375 0.014116283870508119 49 -1.3465995788574219 4 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 61.08992128646608 0.016056751534446034 1 K{M(Oxidation (M))|F}{I|L}DG[MT]K 8 3 54.624 0 0 5.0318 0 0 0 162.0556582086547 162.0556582086547 47.176660211850496 0 0 0 0 2.3494850021680094 0 0.5 0 K{M(Oxidation (M))|F}{I|L}DG[MT]K 5.0318 - 145 + NaN NaN 109456.5 NaN 5305 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7557 40.88 NaN 114690 35 0 7305.4 0.261 + 13081 KYLEETNSL 9 43 548.7805809922456 1095.5466090512912 2 548.7797241210938 MULTI HCD FTMS 0 0 0 7552 73800.828125 0.48957671037413764 3 -0.08937835693359375 5 Unmodified _KYLEETNSL_ ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3 35.61225514009592 0.08548698421724198 1 EETNS{I|L} 6 3 47.727 0 0 4.3564 0 0 404.24189955879064 0 404.24189955879064 0 27.829693599488294 0 0 0 1.1747425010840047 0 0.2614393726401688 0 + EETNS{I|L} 4.3564 + + 112 NaN NaN 98253.6 NaN 5306 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7558 40.883 NaN 183640 35 0 26804 0.261 + 27498 TAAAENIRL 9 57 479.7696010553137 957.5246491774274 2 479.7690124511719 MULTI HCD FTMS 0 0 0 7552 82790.0234375 1 0 0 6 Unmodified _TAAAENIRL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229|ITGA6 57.24910588100465 0.021429789259086996 1 [TA]AAEN{I|L}R{I|L} 9 0 + 75.697 0 0 7.9054 7.9054 91.273 0 0 0 2.7371905864353607 2.7371905864353607 2.7371905864353607 9.208187539523749 0 2.4604093769761874 1.6989700043360187 0 0 + + [TA]AAEN{I|L}R{I|L};[TA]AAEGG{I|L}R{I|L};[TA]AAE[R{I|L}]N{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}AEN{I|L}R{I|L};[KG]EEN{I|L}R{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}AEN{I|L}[VG]{I|L};{[TV]|[{I|L}S]}NEN{I|L}R{I|L};[KG]EEGG{I|L}R{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}AA[PG];{[TV]|[{I|L}S]}GGEN{I|L}R{I|L} 7.9054;6.9438;5.4751;4.6465;4.1744;3.6792;3.4357;3.2071;2.6931;2.4684 +;-;-;-;-;-;-;-;-;- + 380 + NaN NaN 126458.1 NaN 5307 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7559 40.886 NaN 120440 35 0 12840 0.261 + -1 YAFITCNYGM 10 39 620.2623481360978 1238.5101433389955 2 620.2620239257812 MULTI HCD FTMS 0 0 0 7552 67340.3671875 0.8804572192742789 -1 0.023136138916015625 7 Carbamidomethyl (C) _YAFITC(Carbamidomethyl (C))NYGM_ REV__chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11;REV__ENSG00000138160|ENST00000260731|KIF11 3.5964929083625545 0.45626689593999237 1 E{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.3079 0 0 358.115211214368 601.2720430963499 959.3872543107179 0 0 0 0 0 0.7614393726401688 0 0 0 E{M(Oxidation (M))|F} 1.3079 - 36 + NaN NaN 122142.6 NaN 5308 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7560 40.89 NaN 58316 35 0 6392.5 0.261 + 9463 HPVSREWTL 9 24 562.7957015412279 1123.5768501492557 2 562.7955932617188 MULTI HCD FTMS 0 0 0 7552 16777.29296875 0.02034943386045365 84 -2.3532447814941406 8 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 5.731851221503515 0.3075653528928475 1 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3758780630645 787.3758780630645 29.604093769761874 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 5 + NaN NaN 95334.4 NaN 5309 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7561 40.893 NaN 66782 35 0 8999.5 0.262 -1 RYQQWMERF 9 35 453.88009176156794 1358.6184458849038 3 454.21478271484375 MULTI HCD FTMS 0 0 0 7552 23552.755859375 0.3478433902547172 25 -0.6981468200683594 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 9.5439744041441 0.27789851728676895 1 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 -1 20.445 0 0 1.5049 0 0 575.2825216679101 0 575.2825216679101 0 18.253800256993955 0 0 0 0.4247425010840047 0 0 0 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 1.5049 + + 21 + NaN NaN 101986.1 NaN 5310 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7562 40.896 NaN 23842 35 0 3571.3 0.261 -1 FCCFAGTFMF 10 19 623.740478515625 NaN 0 623.740478515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))CFAGTFM(Oxidation (M))F_ CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87937.9 NaN 5311 2249 7552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7564 40.902 NaN 797380 35 0 159030 0.327 -1 0 59 638.3204419905012 1274.6263310478023 2 638.3203125 MULTI HCD FTMS 0 0 0 7563 426541.75 0.7258680474678044 1 -0.0231170654296875 1 NaN NaN 1 C[Q{I|L}]E[PA]NQ{[QN]|[E{I|L}]|[KN]} 10 -1 67.232 0 0 5.2747 0 0 131.09590998358777 0 131.09590998358777 0 44.83649220417425 0 0 0 2.8807196863200843 0 1.5189301784845295 1.4361818737241734 C[Q{I|L}]E[PA]NQ{[QN]|[E{I|L}]|[KN]} 5.2747 - 1159 + NaN NaN 223555.9 NaN 5312 2250 7563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7565 40.906 NaN 204120 35 0 37637 0.261 + 3741 ENDELEWTW 9 33 611.2566656750278 1220.4987784168554 2 611.2564086914062 MULTI HCD FTMS 0 0 0 7563 102911.3671875 0.8891489798582536 1 -0.0231170654296875 2 Unmodified _ENDELEWTW_ REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant 1.844237919475145 0.33703635659052655 1 EEQH 4 -1 37.779 0 0 3.0954 0 0 340.1056830498522 354.1669100397094 694.2725930895616 0 0 0 0 0 1.7302046884880937 0 0.805462187404089 0 EEQH 3.0954 - 21 + NaN NaN 113244.8 NaN 5313 2250 7563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7566 40.909 NaN 187700 35 0 34949 0.261 + 24800 RYPDSHQLF 9 46 581.7858674641855 1161.5571819951708 2 581.7857666015625 MULTI HCD FTMS 0 0 0 7563 83141.9453125 0.9762190504627152 2 -0.05291748046875 3 Unmodified _RYPDSHQLF_ ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 30.7034409873982 0.10802119112323902 1 [YR][DP]SHQ{I|L}{M(Oxidation (M))|F} 9 0 + 52.034 0 0 4.4797 4.4797 85.403 0 0 0 2.1522748654137303 41.23233290217725 2.1522748654137303 9.208187539523749 0 1.7134679910804405 0 0.3807196863200844 0 + + [YR][DP]SHQ{I|L}{M(Oxidation (M))|F};[YR][DP]SH[AG]{I|L}{M(Oxidation (M))|F} 4.4797;3.687 +;- + 114 NaN NaN 106340.1 NaN 5314 2250 7563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7567 40.913 NaN 127180 35 0 29373 0.261 -1 DMHTEVTTL 9 35 531.7421757598927 1061.4697985865853 2 531.741943359375 MULTI HCD FTMS 0 0 0 7563 50691.7265625 0.08312954541564434 -13 0.3842926025390625 4 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 25.399314129420986 0.14091189997036632 1 VTT{I|L} 4 -1 50.433 0 0 4.7512 0 0 629.21000868965 0 629.21000868965 0 35.828956512079344 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.7512 + + 25 NaN NaN 115146.3 NaN 5315 2250 7563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7568 40.916 NaN 92684 35 0 11682 0.263 + 11941 KFIWTNHKF 9 50 407.55733180093375 1219.6501660030012 3 407.5572204589844 MULTI HCD FTMS 0 0 0 7563 28129.26171875 0.11210635924121472 35 -0.9410476684570312 5 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 9.38312468134398 0.279288223203164 1 DHK{M(Oxidation (M))|F} 4 6 18.136 0 0 1.487 0 0 674.3948081922575 0 674.3948081922575 0 18.13608784304506 0 0 0 0 0 0 0 DHK{M(Oxidation (M))|F} 1.487 - 17 + NaN NaN 90747.8 NaN 5316 2250 7563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7569 40.919 NaN 55632 35 0 7315.5 0.261 -1 RYVQPMASF 9 24 557.7714698977575 1113.5283868623148 2 557.7715454101562 MULTI HCD FTMS 0 0 0 7563 17884.380859375 0.593931160360323 1 -0.0231170654296875 6 Oxidation (M) _RYVQPM(Oxidation (M))ASF_ ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H 12.240655878213236 0.2545997876781172 1 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3321 0 0 861.4115467755875 0 861.4115467755875 0 4.771212547196626 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.3321 + + 11 NaN NaN 88574.6 NaN 5317 2250 7563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7571 40.925 NaN 158780 35 0 20846 0.327 + 19572 NSTSIEPRL 9 54 508.7722272627488 1015.5299015922976 2 508.7721252441406 MULTI HCD FTMS 0 0 0 7570 55241.49609375 0.4689909590597141 -4 0.11910247802734375 1 Unmodified _NSTSIEPRL_ CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4 35.61225514009592 0.08548698421724198 1 NSTS{I|L}E 6 3 55.583 0 0 5.4733 0 0 0 381.2253817193969 381.2253817193969 43.615305265358785 0 0 0 0 1.1694451763165201 0 0.4247425010840047 0 + NSTS{I|L}E 5.4733 + + 38 + NaN NaN 121715.3 NaN 5318 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7572 40.929 NaN 178520 35 0 25002 0.262 -1 YYFECTDTF 9 43 415.82912960869936 1244.4655594262981 3 415.82965087890625 MULTI HCD FTMS 0 0 0 7570 18395.65625 0.5175838041017299 1 -0.0298004150390625 2 Carbamidomethyl (C) _YYFEC(Carbamidomethyl (C))TDTF_ ENSG00000148123|ENST00000374874|PLPPR1 5.296884461304476 0.3108627248283497 1 G 1 -1 5.4846 0 0 0.44072 0 0 1052.3756068889918 132.0453280084594 1184.4209348974512 0 0 0 0 0 0 0 0 0 G 0.44072 - 7 + NaN NaN 105482.9 NaN 5319 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7573 40.933 NaN 73208 35 0 11229 0.261 + -1 LNAEDMVSG 9 35 476.2073913916655 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 7570 7237.28515625 1 0 0 3 Oxidation (M) _LNAEDM(Oxidation (M))VSG_ REV__ENSG00000134538|ENST00000256958|SLCO1B1 2.9952420565917617 0.2807323172627736 1 D 1 -1 2.4743 0 0 0.26034 0 0 408.1645253596998 424.18256555728755 832.3470909169873 0 0 0 0 0 0 0 0 0 D 0.26034 + + 3 + NaN NaN 93750 NaN 5320 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7574 40.936 NaN 29280 35 0 5710.7 0.261 + -1 SFPEHCRWHT 10 18 452.8701683803215 NaN 0 452.8703918457031 PEAK HCD FTMS 0 0 0 7570 15329.3115234375 0.6082311059006638 26 -0.6941261291503906 4 Carbamidomethyl (C) _SFPEHC(Carbamidomethyl (C))RWHT_ REV__ENST00000378609.8_1_1:1721948-1722029:-|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87638.2 NaN 5321 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7575 40.939 NaN 39100 35 0 5536.2 0.261 + 4328 EVTPVTGASLR 11 28 565.3142882718003 1128.6140236104004 2 565.3140258789062 MULTI HCD FTMS 0 0 0 7570 14013.2822265625 0.35016880313806825 4 -0.10699462890625 5 Unmodified _EVTPVTGASLR_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 2.0860074813731053 0.4097721463192591 1 G 1 10 4.6041 0 0 0.40794 0 0 621.3458178992661 447.2289217584594 1068.5747396577256 0 0 0 0 0 0 0 0 0 + G 0.40794 + + 2 + NaN NaN 96480.2 NaN 5322 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7576 40.943 NaN 40068 35 0 10700 0.261 -1 RYLEKPMEI 9 20 597.8152163227822 1193.6158797123644 2 597.8135375976562 MULTI HCD FTMS 0 0 0 7570 13071.798828125 0.13401956014543273 48 -1.3067665100097656 6 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88774.8 NaN 5323 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7577 40.946 NaN 63170 35 0 6009.7 0.264 -1 0 35 403.553488050143 1207.638634750629 3 403.55413818359375 MULTI HCD FTMS 0 0 0 7570 7919.91455078125 0.39036509229856614 4 -0.10699462890625 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 108429.9 NaN 5324 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7578 40.949 NaN 18842 35 0 5228.4 0.261 + -1 QCMKQCQVR 9 20 590.7729383668844 1179.5313238005688 2 590.7730712890625 MULTI HCD FTMS 0 0 0 7570 11548.390625 0.3479641940519114 24 -0.6648902893066406 8 Carbamidomethyl (C) _QCMKQC(Carbamidomethyl (C))QVR_ REV__ENST00000262039.8_1_18:39593472-39593538:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85457.3 NaN 5325 2251 7570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7580 40.954 NaN 218570 35 0 67383 0.327 + 10553 IPIHADPRL 9 38 516.3035336607867 1030.5925143883733 2 516.30322265625 MULTI HCD FTMS 0 0 0 7579 67340.8125 0.1966307964816243 7 -0.17980194091796875 1 Unmodified _IPIHADPRL_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 3.5964929083625545 0.32375295897743744 1 AY 2 8 15.969 0 0 1.5495 0 0 150.16668538622326 643.3206855472581 793.4873709334813 0 0 0 0 0 0.5 0 0 0 AY 1.5495 - 16 + NaN NaN 125458.2 NaN 5326 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7581 40.959 NaN 158550 35 0 29650 0.261 + 18548 MVDGKPVNL 9 50 486.76320717813627 971.5118614230726 2 486.76226806640625 MULTI HCD FTMS 0 0 0 7579 55661.4375 0.7655090585212805 3 -0.0771942138671875 2 Unmodified _MVDGKPVNL_ ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 24.020572477871973 0.15282392193088168 1 MVD[RN]P 6 5 52.44 0 0 5.3978 0 0 0 256.16657434635005 256.16657434635005 39.609178215846654 0 0 0 0 0.805462187404089 2 0 0.5 MVD[RN]P 5.3978 - 79 + NaN NaN 104102 NaN 5327 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7582 40.962 NaN 80654 35 0 13909 0.261 + 33656 YKDSVQVF 8 38 493.2533515450209 984.4921501568418 2 493.25286865234375 MULTI HCD FTMS 0 0 0 7579 42942.015625 0.8798232727200551 1 -0.02977752685546875 3 Unmodified _YKDSVQVF_ ENSG00000157353|ENST00000288078|FCSK;ENST00000464499.5_1_16:70497084-70500964:+|nuORF;ENST00000571487.5_1_16:70497084-70500964:+|nuORF;ENST00000576107.5_1_16:70497084-70500232:+|nuORF;nc|ENSG00000157353|Q8N0W3-2|FCSK 14.838274106304384 0.4846187982323419 1 V{M(Oxidation (M))|F} 2 6 22.959 0 0 2.332 0 0 720.3441639630875 0 720.3441639630875 0 13.521825181113625 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.332 + + 18 NaN NaN 96368.4 NaN 5328 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7583 40.966 NaN 43931 35 0 3833.2 0.261 + 34811 YREIHDTTL 9 20 574.29089224354 NaN 0 574.291259765625 PEAK HCD FTMS 0 0 0 7579 12680.8515625 0.39696213663904206 18 -0.49346160888671875 4 Unmodified _YREIHDTTL_ REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant;REV__ENSG00000137628|ENST00000393743|DDX60 13.042465956692817 0.23204487237355156 1 T 1 -1 12.346 0 0 1.0768 0 0 131.09782464446863 911.3990854166367 1042.4969100611054 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 T 1.0768 + + 3 + NaN NaN 89242.1 NaN 5329 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7584 40.969 NaN 116840 35 0 10427 0.261 + 25973 SPDPTRESVL 10 36 550.7826711285107 1099.5507893238214 2 551.28369140625 MULTI HCD FTMS 0 0 0 7579 31065.85546875 0.5365395439623118 -3 0.08937835693359375 5 Unmodified _SPDPTRESVL_ ENSG00000162745|ENST00000294794|OLFML2B 10.150570793230772 0.4161670024087991 1 V{I|L} 2 8 17.078 0 0 1.5532 0 0 869.38578993965 0 869.38578993965 0 3.266062568876718 0 0 0 0 0 0 0 + V{I|L} 1.5532 + + 27 NaN NaN 101219 NaN 5330 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7585 40.972 NaN 189440 35 0 89256 0.262 + 15581 LPDVLENK 8 39 464.26080836282824 926.5070637924565 2 464.2607116699219 MULTI HCD FTMS 0 0 0 7579 47907.125 0.7053040958763582 -4 0.11251449584960938 6 Unmodified _LPDVLENK_ ENSG00000115602|ENST00000233954|IL1RL1 15.847184025352803 0.47719562709667024 1 {I|L}PDR 4 5 49.641 0 0 5.3579 0 0 0 442.2213228815063 442.2213228815063 48.047444008242906 0 0 0 0 0.4247425010840047 1.3979400086720375 0.4247425010840047 0 {I|L}PDR 5.3579 - 9 + NaN NaN 122375.2 NaN 5331 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7586 40.976 NaN 55269 35 0 4267.1 0.261 + 4612 EYLTKVDKL 9 45 554.8161976461816 1107.6178423591632 2 554.81591796875 MULTI HCD FTMS 0 0 0 7579 19083.224609375 0.08125961290174918 8 -0.2061767578125 7 Unmodified _EYLTKVDKL_ ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 6.2057823575117 0.30397260197431997 1 [YE]{I|L} 3 6 19.666 0 0 1.7755 0 0 0 699.4080294244749 699.4080294244749 14.687653158479252 0 0 0 0 0 1.2218487496163564 0 0 + [YE]{I|L} 1.7755 + + 31 + NaN NaN 114695.2 NaN 5332 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7587 40.979 NaN 35819 35 0 4588.9 0.261 + -1 HSCCSIKMCA 10 26 606.7326541948133 1211.4507554564266 2 606.7317504882812 MULTI HCD FTMS 0 0 0 7579 17731.470703125 0.8539470857386667 1 -0.02977752685546875 8 2 Carbamidomethyl (C),Oxidation (M) _HSC(Carbamidomethyl (C))CSIKM(Oxidation (M))C(Carbamidomethyl (C))A_ REV__chr1:15305819-15308613|206|11.12|0.29|5.26|+|ENST00000375997|FHAD1,FHAD1;REV__ENSG00000142621|ENST00000688493|FHAD1;REV__ENST00000459961.1_1_1:15655730-15656069:+|nuORF;REV__ENST00000471347.5_1_1:15654853-15671627:+|nuORF;REV__ENST00000472131.5_1_1:15653545-15656069:+|nuORF;REV__nc|ENSG00000142621|B1AJZ9-3|FHAD1;REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1;REV__nc|ENSG00000142621|B1AJZ9|FHAD1 1.4819007175156935 0.4674597685733628 1 V 1 -1 16.99 0 0 1.4024 0 0 815.3387997452922 294.0217379205688 1109.360537665861 0 0 0 0 0 1 0 0 0 V 1.4024 - 3 + NaN NaN 90224.9 NaN 5333 2252 7579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7589 40.984 NaN 185930 35 0 31656 0.327 + 784 ASTIFNMEL 9 37 513.2521519994191 1024.489751065638 2 513.2611694335938 MULTI HCD FTMS 0 0 0 7588 36690.88671875 1 0 0 1 Unmodified _ASTIFNMEL_ ENST00000519844.1_1_8:101393729-101422965:-|nuORF;ENST00000523870.1_1_8:101393729-101407626:-|nuORF 18.1463463914782 0.20357593197100715 1 YSS{I|L} 4 7 28.136 0 0 2.7464 0 0 556.2672596662125 0 556.2672596662125 0 11.141303353600094 0 0 0 0.4247425010840047 0 0.4247425010840047 0 YSS{I|L} 2.7464 - 63 NaN NaN 116523.9 NaN 5334 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7590 40.989 NaN 79176 35 0 11179 0.261 + 19427 NPLRSEPAL 9 42 498.77746161707677 995.5403703009536 2 498.7769470214844 MULTI HCD FTMS 0 0 0 7588 39557.08984375 0.4467096227654737 6 -0.1500244140625 2 Unmodified _NPLRSEPAL_ ENSG00000188647|ENST00000340434|PTAR1 9.38312468134398 0.279288223203164 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 124966.2 NaN 5335 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7591 40.992 NaN 96989 35 0 11751 0.261 + 5782 FPATGCQKL 9 41 482.7495451361235 963.484537339047 2 482.7496643066406 MULTI HCD FTMS 0 0 0 7588 74401.8359375 0.5042967851449627 -7 0.21179580688476562 3 Unmodified _FPATGCQKL_ ENSG00000137154|ENST00000380394|RPS6 51.629811660486645 0.02929079705179888 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE 8 7 + 61.744 0 0 6.4084 6.4084 86.19 0 0 0 13.696662315049934 47.764706236572465 13.696662315049934 5.206604445392827 0 0.7302046884880937 1.5228787452803376 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[R{M(Oxidation (M))|F}]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[C(Carbamidomethyl (C))Q]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PG][H{I|L}]APE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]T[PS]{I|L} 6.4084;5.868;5.2345;4.2529;4.0909 -;-;-;-;- 72 NaN NaN 91456.2 NaN 5336 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7592 40.996 NaN 217110 35 0 22703 0.261 + 31572 VYIDKVRSL 9 40 546.8243743041269 1091.6341956750537 2 546.824462890625 MULTI HCD FTMS 0 0 0 7588 82356.1171875 0.43430947376765067 -3 0.08269500732421875 4 Unmodified _VYIDKVRSL_ ENSG00000113368|ENST00000261366|LMNB1 34.93206674587334 0.08860942999206235 1 VY{I|L}DKV 6 3 80.152 0 0 7.3423 0 0 0 371.20456873111567 371.20456873111567 78.55774396488272 0 0 0 0 1.1747425010840047 2 0.4247425010840047 0 + VY{I|L}DKV 7.3423 + + 101 + NaN NaN 131840.1 NaN 5337 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7593 40.999 NaN 66868 35 0 8685.2 0.261 -1 LETTCLEL 8 31 489.74434223047984 977.4741315277597 2 489.7440490722656 MULTI HCD FTMS 0 0 0 7588 13885.884765625 0.38890967574581875 6 -0.1500244140625 5 Carbamidomethyl (C) _LETTC(Carbamidomethyl (C))LEL_ nc|ENSG00000111305|Q2KHT4-4|GSG1;nc|ENSG00000111305|Q2KHT4-7|GSG1;nc|ENSG00000111305|Q2KHT4-8|GSG1 4.75600775471527 0.5349361699807423 1 E{I|L} 2 -1 20.969 0 0 2.1452 0 0 717.3405018537125 0 717.3405018537125 0 20.969100130080562 0 0 0 0 0 0 0 E{I|L} 2.1452 + + 3 NaN NaN 96416.1 NaN 5338 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7594 41.002 NaN 113310 35 0 14142 0.261 + 17414 LYREAWRRL 9 47 421.5752409833658 1261.7038935502974 3 421.5749206542969 MULTI HCD FTMS 0 0 0 7588 15378.1953125 0.5720753023660192 -1 0.02977752685546875 6 Unmodified _LYREAWRRL_ REV__ENST00000412277.6_1_22:31518982-31520873:+|nuORF 2.498486711656943 0.33207666356665205 1 {I|L} 1 -1 15.485 0 0 1.2273 0 0 1130.6095007053739 0 1130.6095007053739 0 8.494850021680094 0 0 0 0 0 0 0 {I|L} 1.2273 + + 2 + NaN NaN 113972.7 NaN 5339 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7595 41.007 NaN 57896 35 0 6410.1 0.261 -1 LFERMCRWL 9 41 437.55385940054003 1309.6397488018201 3 437.5531311035156 MULTI HCD FTMS 0 0 0 7588 14928.634765625 0.7193348036629936 12 -0.3251533508300781 7 Carbamidomethyl (C) _LFERMC(Carbamidomethyl (C))RWL_ ENST00000508041.1_1_3:134332031-134343939:-|nuORF 2.498486711656943 0.33207666356665205 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84300.3 NaN 5340 2253 7588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7597 41.012 NaN 1419700 35 0 325740 0.327 + 35394 YYEEQHPEL 9 76 604.2670896750219 1206.5196264168437 2 604.2670288085938 MULTI HCD FTMS 0 0 0 7596 812645.125 0.3531811209835674 5 -0.12248992919921875 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 173.68634876852585 1.8204875074637502E-09 1 YYEEQHPE{I|L} 9 0 + 104.36 0 0 8.6494 8.6494 95.028 0 0 0 9.115976820532609 39.719464567355786 9.115976820532609 16.510234424404686 0 2.4247425010840047 2 1.3243923658886185 0.7302046884880937 + + YYEEQHPE{I|L};YYEE[AG]HPE{I|L};[YE]YEQHPE{I|L};[YE]EYQHPE{I|L};EEYYQHPE{I|L};[YE]YE[AG]HPE{I|L};[YE]EY[AG]HPE{I|L};EEYY[AG]HPE{I|L};EEQYYHPE{I|L};[EP]{I|L}HEQEYY 8.6494;7.2809;7.091;6.4234;5.7674;5.7226;5.055;4.399;3.9983;3.8773 +;-;-;-;-;-;-;-;-;- + 2695 NaN NaN 297071.5 NaN 5341 2254 7596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7598 41.016 NaN 301090 35 0 29384 0.263 + 14213 LATKTEVAL 9 51 473.2845218415903 944.5544907499806 2 473.2841796875 MULTI HCD FTMS 0 0 0 7596 212802.671875 0.10806372753606813 7 -0.17515945434570312 2 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 72.96794272382148 0.008127836904478181 1 [{I|L}A]TK{[ET]|[MV]}VA{I|L} 9 0 + 67.418 0 0 7.1376 7.1376 91.353 0 0 0 20.87128018967597 56.616225017174386 20.87128018967597 11.197887582883936 0 2.274227503252014 1.5228787452803376 1.2614393726401687 0 + + [{I|L}A]TK{[ET]|[MV]}VA{I|L};[{I|L}A]T[TA][VS]VA{I|L};[{I|L}A]TKD[{I|L}T]A{I|L};[{I|L}A]T{NN|[MP]|[D{I|L}]|[EV]}[KT]A{I|L};[{I|L}A][HK]{[HG]|PP}VA{I|L};[{I|L}A]T[TA]A[{I|L}T]A{I|L} 7.1376;5.952;5.6474;4.5103;4.469;4.4619 +;-;-;-;-;- + 164 NaN NaN 135975.8 NaN 5342 2254 7596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7599 41.02 NaN 410790 35 0 89834 0.261 + 16552 LTTIDQEAKS 10 56 553.2894412577307 NaN 0 553.3040161132812 PEAK HCD FTMS 0 0 0 7596 6126.51318359375 0.8435425468625635 -1 0.02753448486328125 3 Unmodified _LTTIDQEAKS_ REV__ENSG00000093167|ENST00000336686|LRRFIP2;REV__ENST00000496479.5_1_3:37095344-37107514:-|nuORF;REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2;REV__nc|ENSG00000093167|Q9Y608-3|LRRFIP2;REV__nc|ENSG00000093167|Q9Y608-4|LRRFIP2;REV__nc|ENSG00000093167|Q9Y608-5|LRRFIP2 9.38312468134398 0.33215363477037435 1 T 1 -1 11.237 0 0 1.0173 0 0 131.0661417940085 869.4277750872501 1000.4939168812587 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.0173 + + 7 + NaN NaN 154740.5 NaN 5343 2254 7596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7600 41.023 NaN 58286 35 0 16222 0.261 + -1 MHLHTMMAQL 10 23 630.7802953921762 1259.5460378511523 2 630.7796630859375 MULTI HCD FTMS 0 0 0 7596 24873.880859375 0.5892825975946046 -4 0.1102294921875 4 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 5.296884461304476 0.4472664531305844 1 AQ{I|L} 3 -1 31.198 0 0 2.4769 0 0 929.3549671857437 0 929.3549671857437 0 31.197887582883936 0 0 0 0.5 0 0 0 AQ{I|L} 2.4769 + + 6 NaN NaN 90280.2 NaN 5344 2254 7596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7601 41.026 NaN 24265 35 0 6570.1 0.262 + -1 RKQMDYLD 8 15 542.7580742216416 NaN 0 542.7581787109375 PEAK HCD FTMS 0 0 0 7596 7784.41064453125 0.3613673005797663 17 -0.46245574951171875 5 Oxidation (M) _RKQM(Oxidation (M))DYLD_ REV__ENSG00000022567|ENST00000517878|SLC45A4;REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4;REV__nc|ENSG00000022567|Q5BKX6-3|SLC45A4;REV__nc|ENSG00000022567|Q5BKX6|SLC45A4 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94881.7 NaN 5345 2254 7596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7603 41.032 NaN 135090 35 0 19386 0.327 + 11896 KFIDTTSKF 9 35 543.79515636783 1085.57575980246 2 543.7951049804688 MULTI HCD FTMS 0 0 0 7602 112417.4921875 0.013183199452525 55 -1.5331993103027344 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 53.31671820480216 0.026930930319421505 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}D{[DS]|[MA]|[CV]|TT}SK{M(Oxidation (M))|F} 9 0 + 63.166 0 0 5.8186 5.8186 92.858 0 0 0 4.698690202528013 57.68114684785509 4.698690202528013 63.16569691289537 0 2.274227503252014 0 0.7302046884880937 0.4247425010840047 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}D{[DS]|[MA]|[CV]|TT}SK{M(Oxidation (M))|F} 5.8186 + + 81 NaN NaN 103505.4 NaN 5346 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7604 41.036 NaN 186310 35 0 41962 0.261 -1 0 32 638.3204419905012 1274.6263310478023 2 638.3198852539062 MULTI HCD FTMS 0 0 0 7602 87404.421875 0.14874060287523672 6 -0.15527725219726562 2 NaN NaN 1 E[PA]NQE{I|L} 7 -1 64.469 0 0 5.0578 0 0 475.25340468574376 0 475.25340468574376 0 54.011007396375135 0 0 0 2.3494850021680094 0 0.3494850021680094 0.4247425010840047 E[PA]NQE{I|L} 5.0578 - 166 NaN NaN 122101.5 NaN 5347 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7605 41.04 NaN 398920 35 0 55498 0.262 + 34402 YPEQKVVTV 9 63 531.795133399883 1061.5757138665658 2 531.795166015625 MULTI HCD FTMS 0 0 0 7602 74802.3828125 0.2647664303762017 -5 0.1301116943359375 3 Unmodified _YPEQKVVTV_ ENSG00000111237|ENST00000549578|VPS29;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;nc|ENSG00000111237|Q9UBQ0-2|VPS29 57.24910588100465 0.021429789259086996 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HC]VTT 8 4 46.961 0 0 4.4237 0 0 0 128.1776611859814 128.1776611859814 15.788493772929044 0 0 0 0 0.805462187404089 1.3979400086720375 0.7302046884880937 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HC]VTT 4.4237 - 150 NaN NaN 139974.7 NaN 5348 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7606 41.043 NaN 124580 35 0 13078 0.261 + 25584 SFSYGYIRQ 9 43 560.7764879846692 NaN 0 560.7657470703125 PEAK HCD FTMS 0 0 0 7602 6322.349609375 0.3194772643674281 27 -0.7351722717285156 4 Unmodified _SFSYGYIRQ_ REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 15.847184025352803 0.21527282152051216 1 SVHW 4 -1 23.928 0 0 2.1373 0 0 147.0926384614965 460.19944177799067 607.2920802394872 0 0 0 0 0 0 0 0.5 0 SVHW 2.1373 - 53 + NaN NaN 110124.6 NaN 5349 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7607 41.046 NaN 92559 35 0 12151 0.261 + -1 YTRRHEAM 8 27 540.2555319772188 1078.4965110212374 2 540.73876953125 MULTI HCD FTMS 0 0 0 7602 2740.99951171875 0.4629937668347176 -3 0.0771942138671875 5 Oxidation (M) _YTRRHEAM(Oxidation (M))_ REV__ENST00000369301.3_1_10:115614771-115618356:+|nuORF 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5753 0 0 913.4507479370562 0 913.4507479370562 0 6.812412373755876 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5753 + + 6 + NaN NaN 100298.3 NaN 5350 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7608 41.05 NaN 84865 35 0 10250 0.262 -1 TIGVDFEMERF 11 37 453.87994203616904 1358.617996708707 3 453.8809509277344 MULTI HCD FTMS 0 0 0 7602 32127.6875 0.09879456686866928 -23 0.6369705200195312 6 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.11662792887243 0.40086653484894175 1 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 -1 27.703 0 0 2.0391 0 0 575.2825473632139 0 575.2825473632139 0 27.703037561203843 0 0 0 0.8494850021680094 0 0 0 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 2.0391 - 15 + NaN NaN 99031.4 NaN 5351 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7609 41.053 NaN 145780 35 0 13316 0.262 + 33723 YLDEQRAV 8 45 497.2526396894837 992.4907264457675 2 497.2545166015625 MULTI HCD FTMS 0 0 0 7602 10533.87109375 0.27056171230172565 -4 0.10699462890625 7 Unmodified _YLDEQRAV_ ENSG00000081791|ENST00000432126|DELE1 12.531546534597751 0.5015908124873912 1 [Y{I|L}][VP]W{[C(Carbamidomethyl (C))G]|[NC]}V 8 5 + 27.113 0 0 2.7318 2.7318 80.047 0 0 0 3.300756084811816 2.498774732166005 2.498774732166005 2.498774732166005 0 0 2 0 0 [Y{I|L}][VP]W{[C(Carbamidomethyl (C))G]|[NC]}V;[Y{I|L}]D[VP][C(Carbamidomethyl (C))K]V;[Y{I|L}]D[VP]A[C(Carbamidomethyl (C))R];[Y{I|L}][VP]D[C(Carbamidomethyl (C))K]V;[Y{I|L}][VP]DA[C(Carbamidomethyl (C))R] 2.7318;2.48;2.48;2.4285;2.4285 -;-;-;-;- 89 NaN NaN 103438.8 NaN 5352 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7610 41.056 NaN 60847 35 0 16187 0.261 -1 TDHVECLQL 9 24 557.7630817823385 1113.511610631477 2 557.7621459960938 MULTI HCD FTMS 0 0 0 7602 27221.798828125 0.7345508105083812 -5 0.1301116943359375 8 Carbamidomethyl (C) _TDHVEC(Carbamidomethyl (C))LQL_ ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28 6.723162845929126 0.3000504726104499 1 {I|L}Q{I|L} 3 -1 26.198 0 0 2.3527 0 0 741.277635642775 0 741.277635642775 0 18.1259189508755 0 0 0 0 0 0 0 {I|L}Q{I|L} 2.3527 + + 9 NaN NaN 114755.4 NaN 5353 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7611 41.06 NaN 121250 35 0 10276 0.261 + 10640 IPTQPDARL 9 46 505.7845818524353 NaN 0 505.7846374511719 PEAK HCD FTMS 0 0 0 7602 11644.6181640625 0.6276994586474747 3 -0.08952713012695312 9 Unmodified _IPTQPDARL_ ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1 1.6526216038709556 0.28723846860855273 1 AM 2 8 6.1979 0 0 0.61392 0 0 131.13160657078862 673.3286226861936 804.4602292569823 0 0 0 0 0 0 0 0 0 AM 0.61392 - 4 + NaN NaN 102289.9 NaN 5354 2255 7602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7613 41.065 NaN 552240 35 0 72562 0.327 + 2307 DMHTEVTTL 9 82 531.7421757598927 1061.4697985865853 2 531.7421875 MULTI HCD FTMS 0 0 0 7612 192562.265625 0.31578355465711616 -7 0.19978713989257812 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 48.345845343767074 0.03388484103555672 1 VTT{I|L} 4 5 45.477 0 0 4.2844 0 0 629.209276267775 0 629.209276267775 0 12.63628443975044 0 0 0 0.9247425010840047 0 0.7302046884880937 0 + VTT{I|L} 4.2844 + + 620 NaN NaN 175295.5 NaN 5355 2256 7612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7614 41.069 NaN 97897 35 0 7343.3 0.261 -1 MPSPVSPKL 9 45 486.2647227134885 NaN 0 486.26470947265625 PEAK HCD FTMS 0 0 0 7612 51276.15234375 0.938373177530362 4 -0.09576797485351562 2 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 27.628801355627647 0.1361920736132224 1 S[VP]S 4 -1 18.984 0 0 1.9561 0 0 244.09205421428322 353.21882044010005 597.3108746543833 0 0 0 0 0 1.3494850021680094 0 0.3807196863200844 0 S[VP]S 1.9561 + + 15 + NaN NaN 104610.3 NaN 5356 2256 7612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7615 41.073 NaN 53837 35 0 5611.4 0.261 -1 FDGWLTQMF 9 30 580.756829712017 1159.4991064908338 2 580.7567138671875 MULTI HCD FTMS 0 0 0 7612 27912.865234375 0.7398700191622751 1 -0.02321624755859375 3 Oxidation (M) _FDGWLTQM(Oxidation (M))F_ OR52B6|p.C117W|1|0.15|ENSG00000187747|chr11:5581227-5581227|C/G|missense_variant 3.5964929083625545 0.32375295897743744 1 N{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8085 0 0 880.3697987287125 0 880.3697987287125 0 3.0102999566398125 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 1.8085 - 3 NaN NaN 104291.1 NaN 5357 2256 7612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7616 41.076 NaN 75770 35 0 6463.3 0.264 + 5556 FLKFKHYHT 9 43 407.55733180093375 1219.6501660030012 3 407.55718994140625 MULTI HCD FTMS 0 0 0 7612 30267.23828125 0.12062705100203541 41 -1.1138076782226562 4 Unmodified _FLKFKHYHT_ ENST00000332290.3_1_6:170104364-170104589:+|nuORF 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96542.1 NaN 5358 2256 7612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7617 41.08 NaN 28260 35 0 3049.3 0.261 + 5045 FDMFHTCLPE 10 24 620.2623481360978 1238.5101433389955 2 620.260986328125 MULTI HCD FTMS 0 0 0 7612 7749.1474609375 0.10131802231202928 6 -0.14522171020507812 5 Unmodified _FDMFHTCLPE_ REV__ENSG00000137642|ENST00000260197|SORL1;REV__SORL1|p.M1581Cfs*34|1|0.09|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant 1.4819007175156935 0.4674597685733628 1 E 1 -1 6.9897 0 0 0.56436 0 0 358.11165808684547 748.3255098932249 1106.4371679800704 0 0 0 0 0 0 0 0 0 E 0.56436 + + 1 + NaN NaN 83935.5 NaN 5359 2256 7612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7618 41.083 NaN 60715 35 0 6836.1 0.261 + 25923 SPAPEEKAVTL 11 34 571.3089378501156 1140.6033227670312 2 571.3090209960938 MULTI HCD FTMS 0 0 0 7612 19700.935546875 0.3246695071324505 -3 0.08063125610351562 6 Unmodified _SPAPEEKAVTL_ ENSG00000197077|ENST00000358431|KIAA1671 8.444304893310646 0.381886813817475 1 V[{I|L}T] 3 8 13.952 0 0 1.2232 0 0 809.392870017775 0 809.392870017775 0 1.5051499783199063 0 0 0 0.5 0 0 0 + V[{I|L}T] 1.2232 + + 10 NaN NaN 108596.9 NaN 5360 2256 7612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7620 41.088 NaN 219440 35 0 33572 0.326 + 19573 NSTSIEPRL 9 48 508.7722272627488 1015.5299015922976 2 508.7720031738281 MULTI HCD FTMS 0 0 0 7619 104068.59375 0.8835247602269465 2 -0.046176910400390625 1 Unmodified _NSTSIEPRL_ CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4 26.020703789607367 0.13554323117744113 1 [NS]TS{I|L}E 6 3 41.401 0 0 4.0768 0 0 0 381.22510509347666 381.22510509347666 19.444152858125108 0 0 0 0 1.25 0 0.5 0 + [NS]TS{I|L}E 4.0768 + + 34 + NaN NaN 113348.1 NaN 5361 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7621 41.093 NaN 65886 35 0 15188 0.261 + 24801 RYPDSHQLF 9 21 581.7858674641855 1161.5571819951708 2 581.78515625 MULTI HCD FTMS 0 0 0 7619 41093.6875 0.48250543622089426 9 -0.2543678283691406 2 Unmodified _RYPDSHQLF_ ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 7.101721422024254 0.29718071671418667 1 Q{I|L}{M(Oxidation (M))|F} 3 6 26.198 0 0 2.2554 0 0 755.33305556465 0 755.33305556465 0 19.20818753952375 0 0 0 0 0 0 0 + Q{I|L}{M(Oxidation (M))|F} 2.2554 + + 5 NaN NaN 96881.5 NaN 5362 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7622 41.096 NaN 43979 35 0 11312 0.261 + 34834 YRLELLEQM 9 30 597.8132759152257 1193.6119988972514 2 597.8126220703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YRLELLEQM_ ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1 1.4819007175156935 0.3397831423917744 1 K 1 9 6.9897 0 0 0.58559 0 0 504.22333624329286 558.2674044244749 1062.4907406677678 0 0 0 0 0 0 0 0 0 K 0.58559 - 3 + NaN NaN 101202.9 NaN 5363 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7623 41.099 NaN 44038 35 0 3273 0.262 -1 ADKMDMSL 8 36 492.7042814229636 983.3940099127273 2 492.7041320800781 MULTI HCD FTMS 0 0 0 7619 19837.666015625 0.08990711340176254 51 -1.4206962585449219 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 1.844237919475145 0.5392561982033289 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4215 0 0 818.3153183617492 0 818.3153183617492 0 10.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4215 + + 6 + NaN NaN 87524.2 NaN 5364 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7624 41.103 NaN 67583 35 0 14416 0.261 + 21949 QEGLDMQM 8 34 476.1981833591701 NaN 0 476.19775390625 PEAK HCD FTMS 0 0 0 7619 13970.7255859375 0.4678755820554533 -24 0.6635818481445312 5 Unmodified _QEGLDMQM_ ENSG00000139144|ENST00000538779|PIK3C2G;nc|ENSG00000139144|O75747-2|PIK3C2G;PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant 4.3292370932331545 0.38822285293237185 1 D 1 7 1.5938 0 0 0.1677 0 0 408.148306560334 424.1827791803344 832.3310857406684 0 0 0 0 0 0 0 0 0 + D 0.1677 + + 3 + NaN NaN 107533.8 NaN 5365 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7625 41.106 NaN 13664 35 0 3925.5 0.261 + -1 MLCCACWFF 9 9 619.235226200904 NaN 0 619.2361450195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _MLC(Carbamidomethyl (C))C(Carbamidomethyl (C))ACWFF_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF;REV__nc|ENSG00000123843|P20851-2|C4BPB 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80879.7 NaN 5366 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7626 41.109 NaN 48168 35 0 5524.6 0.261 + 28955 TYAKQYEEF 9 22 589.7716505942524 1177.5287482553047 2 589.7723388671875 MULTI HCD FTMS 0 0 0 7619 15745.1669921875 0.28563604424579214 -4 0.10384750366210938 7 Unmodified _TYAKQYEEF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 11.494710602746466 0.2610445893512368 1 EE{M(Oxidation (M))|F} 3 6 23.188 0 0 1.9692 0 0 754.3646107404312 0 754.3646107404312 0 23.187587626244124 0 0 0 0 0 0 0 + EE{M(Oxidation (M))|F} 1.9692 + + 7 NaN NaN 85977 NaN 5367 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7627 41.113 NaN 148710 35 0 24282 0.264 + 10019 IETYNRIIQL 10 42 421.5752409833658 1261.7038935502974 3 421.5755310058594 MULTI HCD FTMS 0 0 0 7619 10538.5908203125 0.39203998957807024 3 -0.07255172729492188 8 Unmodified _IETYNRIIQL_ REV__ENSG00000178409|ENST00000369042|BEND3 3.3196427980023873 0.4577323075863651 1 QAW 3 -1 20.005 0 0 1.5856 0 0 133.254766371661 740.2660616510374 873.5208280226984 0 0 0 0 0 0 0 0 0.3807196863200844 QAW 1.5856 - 11 + NaN NaN 110262.8 NaN 5368 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7628 41.116 NaN 29265 35 0 4292.8 0.261 + 32892 YAAFKRWHF 9 18 613.315126407072 1224.6156998809438 2 613.3154907226562 MULTI HCD FTMS 0 0 0 7619 7233.013671875 0.36479978927468015 -7 0.18654251098632812 9 Unmodified _YAAFKRWHF_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;nc|ENSG00000112031|Q9UGC7-3|MTRF1L 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89611.2 NaN 5369 2257 7619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7630 41.121 NaN 101960 35 0 9443.5 0.327 + 20530 PDSSWWPLL 9 42 550.7716768070352 NaN 0 550.7822875976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PDSSWWPLL_ ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4 7.289230182591677 0.2599242500475609 1 RM{M(Oxidation (M))|F} 3 9 7.7917 0 0 0.70864 0 0 159.06738883126133 503.2366121881469 662.3040010194082 0 0 0 0 0 0 0 0 0 RM{M(Oxidation (M))|F} 0.70864 - 16 + NaN NaN 93241.1 NaN 5370 2258 7629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7631 41.126 NaN 126280 35 0 27743 0.261 + 22012 QFQQLLVR 8 33 516.3035336607867 1030.5925143883733 2 516.3034057617188 MULTI HCD FTMS 0 0 0 7629 34381.140625 0.10039069643005095 13 -0.3530464172363281 2 Unmodified _QFQQLLVR_ REV__ENSG00000173040|ENST00000344408|EVC2;REV__nc|ENSG00000173040|Q86UK5-2|EVC2;REV__nc|ENSG00000173040|Q86UK5-3|EVC2 4.75600775471527 0.5349361699807423 1 VR 2 -1 17.959 0 0 1.7426 0 0 757.4122908549733 0 757.4122908549733 0 16.84955642535897 0 0 0 0 0 0 0 VR 1.7426 + + 12 + NaN NaN 101035.8 NaN 5371 2258 7629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7632 41.129 NaN 14181 35 0 4033 0.261 + -1 CEECEETGWA 10 15 607.2097080112866 NaN 0 606.7324829101562 PEAK HCD FTMS 0 0 0 7629 8251.5224609375 0.5971177986926749 7 -0.18820953369140625 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))EECEETGWA_ REV__ENSG00000166147|ENST00000316623|FBN1 0.4007161486938917 0.3398413315442166 1 V 1 -1 6.9897 0 0 0.57652 0 0 816.2910763235512 294.0222262018188 1110.31330252537 0 0 0 0 0 0 0 0 0 V 0.57652 - 1 + NaN NaN 85508.9 NaN 5372 2258 7629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7634 41.134 NaN 530800 35 0 121180 0.327 + 35395 YYEEQHPEL 9 51 604.2670896750219 1206.5196264168437 2 604.266845703125 MULTI HCD FTMS 0 0 0 7633 307703.53125 0.1337300560284259 10 -0.2873039245605469 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 90.13494162714682 0.004522430935000059 1 YYEEQH 6 3 91.988 0 0 7.6242 0 0 0 354.16713379002886 354.16713379002886 58.22850266125798 0 0 0 0 2.1237125054200234 2 0.7614393726401688 0.3494850021680094 + YYEEQH 7.6242 + + 186 + NaN NaN 160911.5 NaN 5373 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7635 41.139 NaN 153350 35 0 19873 0.263 + 5783 FPATGCQKL 9 45 482.7495451361235 963.484537339047 2 482.7493896484375 MULTI HCD FTMS 0 0 0 7633 124287.5234375 0.8424227401567331 -1 0.013080596923828125 2 Unmodified _FPATGCQKL_ ENSG00000137154|ENST00000380394|RPS6 63.960520009940105 0.0120409805053046 1 {I|L}MATG 5 6 69.68 0 0 7.2321 0 0 0 487.2335604303344 487.2335604303344 54.10728139283883 0 0 0 0 0.9247425010840047 2 0.6989700043360187 0 {I|L}MATG 7.2321 - 96 + NaN NaN 106889.9 NaN 5374 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7636 41.142 NaN 259580 35 0 21537 0.261 + 31573 VYIDKVRSL 9 53 546.8243743041269 1091.6341956750537 2 546.8245239257812 MULTI HCD FTMS 0 0 0 7633 109027.09375 0.574960322682209 3 -0.07582855224609375 3 Unmodified _VYIDKVRSL_ ENSG00000113368|ENST00000261366|LMNB1 34.93206674587334 0.08860942999206235 1 VY{I|L}DKV 6 3 80.706 0 0 7.3932 0 0 0 371.2047518365844 371.2047518365844 53.5839461523458 0 0 0 0 0.8494850021680094 2 0.4247425010840047 0.3807196863200844 + VY{I|L}DKV 7.3932 + + 85 + NaN NaN 122555.2 NaN 5375 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7637 41.145 NaN 149790 35 0 33662 0.263 -1 ELSSCSHEQAL 11 44 420.85572139384317 1259.5453347817295 3 420.8556823730469 MULTI HCD FTMS 0 0 0 7633 41523.40234375 0.6788535348310273 1 -0.02637481689453125 4 Carbamidomethyl (C) _ELSSC(Carbamidomethyl (C))SHEQAL_ ENSG00000244405|ENST00000306376|ETV5;ETV5|p.H179Pfs*31|1|0.31|ENSG00000244405|chr3:186079931-186079932|-/G|frameshift_variant;nc|ENSG00000244405|P41161-2|ETV5 4.406150317652783 0.39959678800402487 1 Q{I|L} 2 -1 25.969 0 0 2.0618 0 0 1000.3930689582298 0 1000.3930689582298 0 22.47425010840047 0 0 0 0.5 0 0 0 Q{I|L} 2.0618 - 8 NaN NaN 101536.9 NaN 5376 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7638 41.149 NaN 70334 35 0 10510 0.261 -1 0 40 513.2521519994191 1024.489751065638 2 513.2608032226562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 S{I|L} 2 -1 23.711 0 0 2.3145 0 0 806.363573142775 0 806.363573142775 0 10.52378753635658 0 0 0 0 0 0.4247425010840047 0 S{I|L} 2.3145 - 8 NaN NaN 95995.9 NaN 5377 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7639 41.152 NaN 131460 35 0 55326 0.261 -1 LSLAHAHLIC 10 18 567.8078485274737 1133.6011441217472 2 567.8079833984375 MULTI HCD FTMS 0 0 0 7633 40825.796875 0.6646500057584663 -5 0.12248992919921875 6 Carbamidomethyl (C) _LSLAHAHLIC(Carbamidomethyl (C))_ nc|ENSG00000095397|Q9P202-4|WHRN 3.5964929083625545 0.45626689593999237 1 {I|L} 1 -1 6.9897 0 0 0.61659 0 0 63.998138546976016 953.4973846941015 1017.4955232410775 0 0 0 0 0 0 0 0 0 {I|L} 0.61659 + + 1 + NaN NaN 103981.3 NaN 5378 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7640 41.155 NaN 168500 35 0 12934 0.261 -1 VHVCVFHL 8 63 505.7669295887874 1009.5193062443748 2 505.76666259765625 MULTI HCD FTMS 0 0 0 7633 11482.4130859375 0.5356227190576969 1 -0.02637481689453125 7 Carbamidomethyl (C) _VHVC(Carbamidomethyl (C))VFHL_ ENST00000367204.5_1_1:204095788-204096322:+|nuORF 6.354104778181461 0.5325651638111438 1 DMA{I|L} 4 -1 22.652 0 0 2.2438 0 0 561.3285999982437 0 561.3285999982437 0 5.573193899842437 0 0 0 0 0 0 0 DMA{I|L} 2.2438 - 20 NaN NaN 111368 NaN 5379 2259 7633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7642 41.161 NaN 1207200 35 0 296330 0.327 + 24898 RYQTQPVTL 9 54 553.303596432319 1104.5926399314378 2 553.3035278320312 MULTI HCD FTMS 0 0 0 7641 566801.4375 0.8648825647945013 1 -0.026294708251953125 1 Unmodified _RYQTQPVTL_ ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-3|SVIL;nc|ENSG00000197321|O95425-4|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant 51.629811660486645 0.02929079705179888 1 [VP]T{I|L}{[YC]|[HE]}[VP]T 9 7 44.173 0 0 3.999 0 0 0 128.07192815719011 128.07192815719011 23.451135281319093 0 0 0 0 1 1.3979400086720375 1.4049471895720984 0 [VP]T{I|L}{[YC]|[HE]}[VP]T 3.999 - 204 NaN NaN 292052.9 NaN 5380 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7643 41.165 NaN 128170 35 0 13690 0.261 + 14208 LASLTSIGAL 10 27 473.2845218415903 944.5544907499806 2 473.2840881347656 MULTI HCD FTMS 0 0 0 7641 81561.125 0.04141770924150994 13 -0.3795967102050781 2 Unmodified _LASLTSIGAL_ REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1 26.88365393820708 0.25965138844209146 1 A{I|L} 2 -1 21.454 0 0 2.2713 0 0 742.4240481731794 0 742.4240481731794 0 15 0 0 0 0.5 0 0 0 A{I|L} 2.2713 + + 8 NaN NaN 99008.7 NaN 5381 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7644 41.168 NaN 182030 35 0 22429 0.261 + 795 ATDLSSGRLP 10 48 508.7722272627488 1015.5299015922976 2 509.76373291015625 MULTI HCD FTMS 0 0 0 7641 5165.521484375 0.23026719557440706 5 -0.14875411987304688 3 Unmodified _ATDLSSGRLP_ REV__ENSG00000260220|ENST00000638797|CCDC187 19.256988751693697 0.33098864134661865 1 [TP]S{I|L}VVHTY 9 -1 [TP] + + 44.724 0.45757 0.23099 4.404 4.404 60.638 0 0 0 0 12.412581433031846 0 0 0 0 0 0.4247425010840047 0 [TP]S{I|L}VVHTY 4.404 - 108 + NaN NaN 134152.2 NaN 5382 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7645 41.172 NaN 53689 35 0 3407.8 0.261 -1 0 38 467.1017037293503 NaN 0 467.1015319824219 PEAK HCD FTMS 0 0 0 7641 45202.5859375 0.6571065570158603 -103 2.8102493286132812 4 NaN NaN 1 Y 1 -1 3.0989 0 0 0.33244 0 0 566.9990484725694 199.10897241763908 766.1080208902084 0 0 0 0 0 0 0 0 0 Y 0.33244 - 1 + NaN NaN 84492.6 NaN 5383 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7646 41.175 NaN 86642 35 0 15239 0.261 + 28854 TVNTSLNVYR 10 27 583.8117995657843 1165.6090461983686 2 583.8119506835938 MULTI HCD FTMS 0 0 0 7641 36418.515625 0.5053276222359027 -3 0.07255172729492188 5 Unmodified _TVNTSLNVYR_ ENSG00000113845|ENST00000494664|TIMMDC1 27.223235318498237 0.2564750587861972 1 {[TV]|[{I|L}S]}NTS{I|L}{[NV]|[RG]}[YR] 10 0 + 60.647 0 0 5.203 5.203 85.859 0 0 0 60.647124887093824 6.544387449636204 6.544387449636204 9.164539485499255 0 0.8494850021680094 1.5228787452803376 0.4247425010840047 0 + + {[TV]|[{I|L}S]}NTS{I|L}{[NV]|[RG]}[YR];{[TV]|[{I|L}S]}GGTS{I|L}{[NV]|[RG]}[YR] 5.203;4.4168 +;- + 40 + NaN NaN 106541.2 NaN 5384 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7647 41.178 NaN 70543 35 0 17888 0.261 + 2638 DVDEPWMGAQL 11 28 630.7802953921762 1259.5460378511523 2 630.7804565429688 MULTI HCD FTMS 0 0 0 7641 32873.5859375 0.7788021588998725 2 -0.0494537353515625 6 Unmodified _DVDEPWMGAQL_ REV__CCL1|p.L13Q|1|0.44|ENSG00000108702|chr17:34363124-34363124|A/T|missense_variant 6.234356020891411 0.3915788988406848 1 G[WM]AQ{I|L} 6 -1 32.664 0 0 2.5933 0 0 555.2211170880875 0 555.2211170880875 0 32.663800089887545 0 0 0 0 0 0 0.4247425010840047 G[WM]AQ{I|L} 2.5933 - 11 NaN NaN 92438.6 NaN 5385 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7648 41.182 NaN 41300 35 0 6109.6 0.261 -1 HMVSDEYEQL 10 22 633.7688655525023 1265.5231781718046 2 633.76904296875 MULTI HCD FTMS 0 0 0 7641 22866.111328125 0.7631844227953865 -1 0.02637481689453125 7 Oxidation (M) _HM(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 5.296884461304476 0.4472664531305844 1 YEQ{I|L} 4 -1 31.938 0 0 2.5237 0 0 714.26664931465 0 714.26664931465 0 31.938200260161125 0 0 0 0 0 0 0 YEQ{I|L} 2.5237 + + 8 NaN NaN 87893.3 NaN 5386 2260 7641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7650 41.187 NaN 983820 35 0 97847 0.327 + 18927 NAFKEITTM 9 73 535.7627833297454 1069.5110137262907 2 535.7628173828125 MULTI HCD FTMS 0 0 0 7649 413738.40625 0.6231221213328071 -4 0.098846435546875 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 168.5375213894962 4.622051367253751E-09 1 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 119.96 0 0 11.217 11.217 95.908 0 0 0 12.32902204431447 12.32902204431447 12.32902204431447 12.32902204431447 0 3.004432191740108 1.5228787452803376 1.7346368802282015 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F} 11.217;10.064;2.6601 +;+;- + 422 + NaN NaN 233306.4 NaN 5387 2261 7649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7651 41.191 NaN 148880 35 0 15830 0.261 + 11897 KFIDTTSKF 9 44 543.79515636783 1085.57575980246 2 543.7949829101562 MULTI HCD FTMS 0 0 0 7649 109892.4296875 0.012887085369922356 61 -1.7178459167480469 2 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 70.92866715596459 0.008787713425443074 1 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 75.06 0 0 6.9143 6.9143 84.973 0 0 0 35.80706579873059 19.26477176880759 19.26477176880759 0.5237875363565792 0 2.6237125054200234 0 0.5 0 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F} 6.9143;6.866 +;- + 120 + NaN NaN 107683.8 NaN 5388 2261 7649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7652 41.195 NaN 263920 35 0 58828 0.261 + 26042 SPEPGTSEL 9 58 458.7164435594195 915.418334185639 2 458.7161560058594 MULTI HCD FTMS 0 0 0 7649 110075.875 0.9960192348040693 -1 0.026294708251953125 3 Unmodified _SPEPGTSEL_ ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B 36.12702656103203 0.08312389501731911 1 [Y{I|L}]YESE 6 7 50.372 0 0 5.5026 0 0 0 128.0710530126926 128.0710530126926 37.89742379213392 0 0 0 0 0.9749073637206093 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]YESE 5.5026 - 61 NaN NaN 136968.1 NaN 5389 2261 7649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7653 41.198 NaN 107070 35 0 12998 0.261 + 1541 AYVHMVTHF 9 43 560.7657570063983 1119.5169610795965 2 560.7655029296875 MULTI HCD FTMS 0 0 0 7649 50153.03125 0.05108981408098901 151 -4.244132995605469 4 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 48.345845343767074 0.03388484103555672 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 48.847 0 0 4.3632 4.3632 90.002 0 0 0 21.408555305749314 43.36242476018043 21.408555305749314 48.84697482522071 0 2.048455006504028 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 4.3632 + + 103 NaN NaN 98502.1 NaN 5390 2261 7649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7654 41.202 NaN 75790 35 0 12122 0.261 + 12438 KPYLCIHCGKN 11 24 638.3204419905012 1274.6263310478023 2 638.3199462890625 MULTI HCD FTMS 0 0 0 7649 42479.11328125 0.07228889321062855 12 -0.353302001953125 5 Unmodified _KPYLCIHCGKN_ ENSG00000197062|ENST00000421553|ZSCAN26;nc|ENSG00000197062|Q16670-2|ZSCAN26;nc|ENSG00000197062|Q16670|ZSCAN26 8.155526934196011 0.3831532958467648 1 ESQE{I|L} 5 10 44.949 0 0 3.5264 0 0 670.3293431395134 0 670.3293431395134 0 44.94850021680094 0 0 0 1 0 0 0 ESQE{I|L} 3.5264 - 37 NaN NaN 107667.7 NaN 5391 2261 7649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7655 41.205 NaN 118680 35 0 78245 0.264 + 15184 LMVCLVHL 8 27 464.26080836282824 926.5070637924565 2 464.2605895996094 MULTI HCD FTMS 0 0 0 7649 22926.818359375 0.33753599061267975 5 -0.15552139282226562 6 Unmodified _LMVCLVHL_ ENSG00000119041|ENST00000263956|GTF3C3;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.5763 0 0 761.4282043947987 0 761.4282043947987 0 14.604093769761874 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5763 + + 1 + NaN NaN 99659.2 NaN 5392 2261 7649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7657 41.21 NaN 1420100 35 0 214110 0.327 + 2308 DMHTEVTTL 9 96 531.7421757598927 1061.4697985865853 2 531.7420043945312 MULTI HCD FTMS 0 0 0 7656 570996.5625 0.9363793244642563 -1 0.023159027099609375 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 64.23631603340823 0.01165516075559909 1 VTT{I|L} 4 5 51.855 0 0 4.8852 0 0 629.2103582058744 0 629.2103582058744 0 14.545743781940452 0 0 0 1.4247425010840047 0 0.805462187404089 0 + VTT{I|L} 4.8852 + + 979 NaN NaN 316662.2 NaN 5393 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7658 41.214 NaN 343430 35 0 33762 0.261 + 26069 SPFKADIEM 9 83 527.2493976322737 1052.4842423313473 2 527.24951171875 MULTI HCD FTMS 0 0 0 7656 120616.765625 0.8523005792396099 -1 0.023159027099609375 2 Oxidation (M) _SPFKADIEM(Oxidation (M))_ ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 78.06048673739656 0.006479972202176041 1 SP{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F} 9 0 + 90.628 0 0 8.6108 8.6108 96.332 0 0 0 77.90775268610524 16.478174818886373 16.478174818886373 30.300084529637985 0 2.6989700043360187 0 1.5044321917401078 0 + + SP{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}[{I|L}V]{[QS]|[NT]}E{M(Oxidation (M))|F};[Y{I|L}][PS]{[QG]|[NA]}{I|L}E{M(Oxidation (M))|F};[YV][TP]{[QG]|[NA]}{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PS]{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};[PS][Y{I|L}]{[QG]|[NA]}{I|L}E{M(Oxidation (M))|F};{[TV]|[{I|L}S]}M{[{M(Oxidation (M))|F}D]|MM}KEPS;{[TV]|[{I|L}S]}MK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]{M(Oxidation (M))|F};{[TV]|[{I|L}S]}MK{[{M(Oxidation (M))|F}D]|MM}EPS 8.6108;5.7319;5.1017;3.8546;3.4713;3.3627;3.2159;3.1358;2.8304;2.5892 +;+;-;-;-;-;-;-;-;- + 813 + NaN NaN 133274.3 NaN 5394 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7659 41.218 NaN 97571 35 0 9599.8 0.261 + 1542 AYVHMVTHF 9 42 560.7657570063983 1119.5169610795965 2 560.7653198242188 MULTI HCD FTMS 0 0 0 7656 39305.43359375 0.040039599693734315 152 -4.277103424072266 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 50.855029805455786 0.030374663808198754 1 {M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 5 4 42.039 0 0 3.7551 0 0 470.2286549298844 0 470.2286549298844 0 19.820618910682484 0 0 0 1 0 0.4247425010840047 0 + {M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 3.7551 + + 114 NaN NaN 96462.4 NaN 5395 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7660 41.221 NaN 118040 35 0 13189 0.261 + 22064 QGYYPCVPSF 10 42 580.756829712017 1159.4991064908338 2 581.271484375 MULTI HCD FTMS 0 0 0 7656 8368.7900390625 0.39775330056241054 7 -0.21147537231445312 4 Unmodified _QGYYPCVPSF_ REV__ENST00000280612.9_1_4:139163161-139163278:-|nuORF 6.723162845929126 0.4397169348982109 1 AS[PG]{M(Oxidation (M))|F}D 6 -1 13.377 0 0 1.1537 0 0 353.10901959142853 229.0970400445922 582.2060596360208 0 0 0 0 0 0 0 0.4247425010840047 0 AS[PG]{M(Oxidation (M))|F}D 1.1537 - 107 + NaN NaN 115629.5 NaN 5396 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7661 41.225 NaN 71480 35 0 10328 0.263 -1 TIGVDFEMERF 11 37 453.87994203616904 1358.617996708707 3 453.8801574707031 MULTI HCD FTMS 0 0 0 7656 24365.357421875 0.07492493610361645 -16 0.4376487731933594 5 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.406150317652783 0.39959678800402487 1 WYM{[RE]|[WV]} 5 -1 15.674 0 0 1.1537 0 0 575.282158258148 0 575.282158258148 0 1.6946999598069823 0 0 0 0.4247425010840047 0 0 0 WYM{[RE]|[WV]} 1.1537 - 22 + NaN NaN 105046.3 NaN 5397 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7662 41.228 NaN 61875 35 0 8493.4 0.261 -1 MPSPVSPKL 9 32 486.2647227134885 NaN 0 486.26458740234375 PEAK HCD FTMS 0 0 0 7656 20201.798828125 0.36970063648871715 10 -0.29380035400390625 6 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 26.268140514670165 0.145325121643443 1 S[VP]S 4 -1 23.544 0 0 2.426 0 0 356.240918960377 241.06453882388908 597.3054577842661 0 0 0 0 0 1.805462187404089 0 0.3807196863200844 0 S[VP]S 2.426 + + 11 + NaN NaN 100869.1 NaN 5398 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7663 41.231 NaN 40600 35 0 5061.5 0.261 + 21918 QDSTFAELW 9 29 548.7509367541168 1095.4873205750334 2 549.2498779296875 MULTI HCD FTMS 0 0 0 7656 23663.025390625 0.26135685878258796 22 -0.6094856262207031 7 Unmodified _QDSTFAELW_ ENSG00000182771|ENST00000327946|GRID1;GRID1|p.R710W|1|0.47|ENSG00000182771|chr10:85647267-85647267|G/A|missense_variant;GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant;nc|ENSG00000182771|Q9ULK0-2|GRID1 4.3292370932331545 0.3181982124262546 1 {[QD]|[EN]|[WG]|[KD]|[RS]}S 3 6 12.447 0 0 1.1362 0 0 0 762.3454683893186 762.3454683893186 12.447274948966937 0 0 0 0 0 0 0.5 0 + {[QD]|[EN]|[WG]|[KD]|[RS]}S 1.1362 + + 2 + NaN NaN 88787 NaN 5399 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7664 41.235 NaN 151930 35 0 11693 0.261 -1 VHVCVFHL 8 56 505.7669295887874 1009.5193062443748 2 505.7518615722656 MULTI HCD FTMS 0 0 0 7656 3647.025634765625 0.17012362927080638 4 -0.13236236572265625 8 Carbamidomethyl (C) _VHVC(Carbamidomethyl (C))VFHL_ ENST00000367204.5_1_1:204095788-204096322:+|nuORF 6.354104778181461 0.5325651638111438 1 D[PA]{M(Oxidation (M))|F} 4 -1 14.693 0 0 1.4554 0 0 561.3276234357437 0 561.3276234357437 0 0.7133375178436552 0 0 0 0 0 0 0 D[PA]{M(Oxidation (M))|F} 1.4554 - 18 NaN NaN 103775.3 NaN 5400 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7665 41.238 NaN 42291 35 0 4522.8 0.261 + 32784 WSEHYLVTL 9 26 574.29089224354 NaN 0 574.2900390625 PEAK HCD FTMS 0 0 0 7656 17401.525390625 0.5447383928275551 28 -0.7741508483886719 9 Unmodified _WSEHYLVTL_ REV__ENSG00000061794|ENST00000081029|MRPS35;REV__MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant 11.640296217721598 0.23883959125015683 1 T 1 -1 13.979 0 0 1.2192 0 0 131.09692936604569 911.401172389006 1042.4981017550517 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 T 1.2192 + + 2 + NaN NaN 89492.6 NaN 5401 2262 7656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7667 41.243 NaN 51378 35 0 4805.3 0.327 + 25924 SPAPEEKAVTL 11 35 571.3089378501156 1140.6033227670312 2 571.3082275390625 MULTI HCD FTMS 0 0 0 7666 26828.146484375 0.44212525215539106 4 -0.12564849853515625 1 Unmodified _SPAPEEKAVTL_ ENSG00000197077|ENST00000358431|KIAA1671 6.1918466704503565 0.39176533041107 1 C 1 11 11.99 0 0 1.0512 0 0 129.11584586270936 905.4388769619128 1034.554722824622 0 0 0 0 0 0.5 0 0 0 C 1.0512 - 9 + NaN NaN 89573.2 NaN 5402 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7668 41.248 NaN 56106 35 0 18309 0.261 + -1 CVMEPEMD 8 28 485.172247389593 968.329941845986 2 485.1717529296875 MULTI HCD FTMS 0 0 0 7666 18687.013671875 0.6169557496832926 1 -0.0330810546875 2 Oxidation (M) _CVMEPEM(Oxidation (M))D_ REV__ENSG00000107371|ENST00000327304|EXOSC3;REV__ENST00000448649.1_1_21:33869131-33869353:+|nuORF;REV__ENST00000465860.5_1_9:37781981-37784738:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95591.3 NaN 5403 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7669 41.251 NaN 44142 35 0 3788.7 0.261 + 2152 DGYEVENL 8 30 469.7075508714122 937.4005488096244 2 469.7070617675781 MULTI HCD FTMS 0 0 0 7666 22352.498046875 0.7815128058870772 1 -0.0330810546875 3 Unmodified _DGYEVENL_ ENSG00000185019|ENST00000217173|UBOX5;nc|ENSG00000185019|O94941-2|UBOX5 3.944395688203298 0.5361403129012058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87521.1 NaN 5404 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7670 41.254 NaN 42608 35 0 5466.5 0.261 + 131 AEDLNTRVAY 10 25 576.2882086695959 1150.5618644059916 2 576.2877807617188 MULTI HCD FTMS 0 0 0 7666 30806.984375 1 0 0 4 Unmodified _AEDLNTRVAY_ ENSG00000134970|ENST00000456936|TMED7;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2 15.248480904072842 0.3684828712757339 1 VAY 3 7 36.198 0 0 3.1461 0 0 799.3803578107437 0 799.3803578107437 0 30.713337517843655 0 0 0 1 0 0 0 + VAY 3.1461 + + 7 NaN NaN 84087.3 NaN 5405 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7671 41.258 NaN 37447 35 0 4241.5 0.263 + 16405 LSKILRAKKHK 11 37 441.29743756651453 NaN 0 441.2976379394531 PEAK HCD FTMS 0 0 0 7666 24716.93359375 0.5342560735355195 -5 0.12200546264648438 5 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 1 R 1 10 3.4949 0 0 0.39688 0 0 141.29322610783532 580.1756075494749 721.4688336573101 0 0 0 0 0 0 0 0 0 + R 0.39688 + + 1 + NaN NaN 99224.1 NaN 5406 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7672 41.261 NaN 86478 35 0 6815.1 0.261 + 14552 LFHAYGLPRF 10 45 407.55733180093375 1219.6501660030012 3 407.55706787109375 MULTI HCD FTMS 0 0 0 7666 32309.640625 0.12876684127285207 48 -1.3447914123535156 6 Unmodified _LFHAYGLPRF_ ENST00000360284.7_1_12:52448627-52448831:+|nuORF 7.289230182591677 0.43672065049472153 1 {M(Oxidation (M))|F} 1 9 16.99 0 0 1.393 0 0 1054.571001429562 0 1054.571001429562 0 4.225490200071285 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.393 + + 7 + NaN NaN 99696.3 NaN 5407 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7673 41.264 NaN 18419 35 0 5047 0.261 -1 AMLYPMYWQH 10 12 452.53584908930367 1354.585717868111 3 452.8695068359375 MULTI HCD FTMS 0 0 0 7666 11931.23828125 0.41059125925306567 -18 0.49393463134765625 7 Oxidation (M) _AMLYPM(Oxidation (M))YWQH_ DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion;DENND1A-NDUFA8|1|fusion;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000474676.1_1_9:126331853-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A 0.15932191953741626 0.4744603884079788 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83583.8 NaN 5408 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7674 41.268 NaN 74305 35 0 8722.9 0.261 + -1 MVCWHAVI 8 38 487.73268452094294 973.4508161086859 2 487.7319641113281 MULTI HCD FTMS 0 0 0 7666 16429.1796875 0.07530144964963154 19 -0.5236396789550781 8 Oxidation (M) _M(Oxidation (M))VCWHAVI_ REV__ENSG00000260903|ENST00000562532|XKR7 6.354104778181461 0.5325651638111438 1 V{I|L} 2 -1 23.271 0 0 2.3906 0 0 743.2917347638687 0 743.2917347638687 0 7.073259432077563 0 0 0 0.3807196863200844 0 0 0 V{I|L} 2.3906 + + 5 NaN NaN 105900.5 NaN 5409 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7675 41.271 NaN 71119 35 0 7259.1 0.261 -1 PYWTRPERMDK 11 42 498.91009694690456 1493.7084614409137 3 498.9101867675781 MULTI HCD FTMS 0 0 0 7666 3604.614990234375 0.20075350159069022 -1 0.0330963134765625 9 Oxidation (M) _PYWTRPERM(Oxidation (M))DK_ ENSG00000068078|ENST00000440486|FGFR3;FGFR3-TACC3|1|fusion;FGFR3-TACC3|10|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|13|fusion;FGFR3-TACC3|14|fusion;FGFR3-TACC3|15|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|3|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|9|fusion;nc|ENSG00000068078|P22607-2|FGFR3;nc|ENSG00000068078|P22607-3|FGFR3;nc|ENSG00000068078|P22607-4|FGFR3 1.4551175022131473 0.41253901545122046 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QS]|[NT]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P 7 -1 8.7844 0 0 0.58809 0 0 0 658.2975317371279 658.2975317371279 5.685457766683017 0 0 0 0 0 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QS]|[NT]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P 0.58809 - 18 NaN NaN 96685.3 NaN 5410 2263 7666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7677 41.276 NaN 309120 35 0 71557 0.327 + 35396 YYEEQHPEL 9 37 604.2670896750219 1206.5196264168437 2 604.2666625976562 MULTI HCD FTMS 0 0 0 7676 158103.90625 0.06871303736825574 15 -0.3883934020996094 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 80.6760300276096 0.005633624786464751 1 YYEEQH 6 3 91.988 0 0 7.6242 0 0 0 354.1669100397094 354.1669100397094 77.05259398656281 0 0 0 0 2.1237125054200234 2 0.7614393726401688 0.3494850021680094 + YYEEQH 7.6242 + + 100 + NaN NaN 140865.8 NaN 5411 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7678 41.281 NaN 139470 35 0 44292 0.263 + 16561 LTVTPPNLV 9 31 477.28689077841835 952.5592286236367 2 477.7711486816406 MULTI HCD FTMS 0 0 0 7676 2915.580078125 0.1698227936461998 4 -0.11898040771484375 2 Unmodified _LTVTPPNLV_ REV__nc|ENSG00000183853|Q96J84-3|KIRREL1 7.910154910731844 0.2910521888787154 1 VA 2 -1 10.969 0 0 1.1515 0 0 130.12570153167445 649.3053072565061 779.4310087881806 0 0 0 0 0 0 0 0 0 VA 1.1515 - 10 + NaN NaN 123282.3 NaN 5412 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7679 41.284 NaN 230640 35 0 21160 0.261 + 22367 QPQETSPEL 9 58 514.7487426403901 1027.4829323475801 2 515.2675170898438 MULTI HCD FTMS 0 0 0 7676 13981.8076171875 0.8191232078818699 3 -0.09256744384765625 3 Unmodified _QPQETSPEL_ ENSG00000135148|ENST00000412615|TRAFD1 17.11289562659939 0.2125047172822487 1 [KT]QS{[ET]|[MV]}{[MG]|[TS]}{M(Oxidation (M))|F} 9 6 + 24.089 0 0 2.3445 2.3445 86.831 0 0 0 8.604699792700576 1.0379466712471732 1.0379466712471732 21.289850105233295 0 0.8494850021680094 0 0.3252574989159953 0 [KT]QS{[ET]|[MV]}{[MG]|[TS]}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}EKE[PS][NP] 2.3445;0.27245 -;- 143 + NaN NaN 118608.1 NaN 5413 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7680 41.288 NaN 48107 35 0 4508.2 0.261 + 28956 TYAKQYEEF 9 30 589.7716505942524 1177.5287482553047 2 589.7713012695312 MULTI HCD FTMS 0 0 0 7676 22237.736328125 0.4034189691921516 3 -0.09256744384765625 4 Unmodified _TYAKQYEEF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 11.494710602746466 0.2610445893512368 1 EE{M(Oxidation (M))|F} 3 6 23.188 0 0 1.9692 0 0 754.363573142775 0 754.363573142775 0 23.187587626244124 0 0 0 0 0 0 0 + EE{M(Oxidation (M))|F} 1.9692 + + 7 NaN NaN 97977.6 NaN 5414 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7681 41.291 NaN 42257 35 0 4943.6 0.263 + -1 SPEMRGMV 8 36 469.7075508714122 937.4005488096244 2 469.70672607421875 MULTI HCD FTMS 0 0 0 7676 19424.57421875 0.6791434885274229 2 -0.06618499755859375 5 2 Oxidation (M) _SPEM(Oxidation (M))RGM(Oxidation (M))V_ REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|80|2|sense 4.3292370932331545 0.5355693454741696 1 [PS]E 3 -1 10.458 0 0 1.1156 0 0 0 621.2517794244749 621.2517794244749 3.8907562519182193 0 0 0 0 0 0 0 0 [PS]E 1.1156 + + 2 + NaN NaN 93941.8 NaN 5415 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7682 41.294 NaN 25723 35 0 6572 0.261 -1 TYRNVMEQF 9 13 602.276712424962 1202.538871916724 2 602.2756958007812 MULTI HCD FTMS 0 0 0 7676 18393.0234375 0.7325975536174989 9 -0.2639656066894531 6 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ BAIAP2L1|p.T228Vfs*8|1|0.03|ENSG00000006453|chr7:98312223-98312224|-/CCCCTTTATTACT|frameshift_variant;ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94332.9 NaN 5416 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7683 41.298 NaN 34716 35 0 4952.2 0.262 + -1 DQLMMDTV 8 25 492.7042814229636 983.3940099127273 2 492.70361328125 MULTI HCD FTMS 0 0 0 7676 11024.8779296875 0.049966309014592716 58 -1.628509521484375 7 2 Oxidation (M) _DQLM(Oxidation (M))M(Oxidation (M))DTV_ REV__ENSG00000139173|ENST00000266534|TMEM117 3.944395688203298 0.5361403129012058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 94638.3 NaN 5417 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7684 41.301 NaN 59660 35 0 7534 0.261 -1 LETTCLEL 8 26 489.74419222921 977.47383152522 2 489.74334716796875 MULTI HCD FTMS 0 0 0 7676 7991.65185546875 0.1688616054202431 -12 0.321807861328125 8 Carbamidomethyl (C) _LETTC(Carbamidomethyl (C))LEL_ nc|ENSG00000111305|Q2KHT4-4|GSG1;nc|ENSG00000111305|Q2KHT4-7|GSG1;nc|ENSG00000111305|Q2KHT4-8|GSG1 4.75600775471527 0.5349361699807423 1 E{I|L} 2 -1 19.464 0 0 1.9913 0 0 717.3392811505875 0 717.3392811505875 0 19.463950151760656 0 0 0 0 0 0 0 E{I|L} 1.9913 + + 8 NaN NaN 101255.8 NaN 5418 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7685 41.304 NaN 17329 35 0 3605.2 0.261 -1 YLCTTSCWM 9 16 619.235226200904 NaN 0 619.235107421875 PEAK HCD FTMS 0 0 0 7676 3948.77783203125 0.292297068859766 4 -0.11898040771484375 9 2 Carbamidomethyl (C),Oxidation (M) _YLC(Carbamidomethyl (C))TTSC(Carbamidomethyl (C))WM(Oxidation (M))_ ENST00000369306.7_1_1:145523400-145523604:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93274.1 NaN 5419 2264 7676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7687 41.309 NaN 680970 35 0 53499 0.327 + 22329 QPKKIKEDYF 10 67 432.57101821098746 1294.6912252331624 3 432.5711364746094 MULTI HCD FTMS 0 0 0 7686 220837.265625 0.9103738516772331 -5 0.14875411987304688 1 Unmodified _QPKKIKEDYF_ ENSG00000123594|ENST00000380622|ATXN3L 19.625955294349634 0.3275374527965692 1 Y{M(Oxidation (M))|F} 2 8 28.271 0 0 2.1836 0 0 966.5508838973514 0 966.5508838973514 0 10.31234684152075 0 0 0 0.7302046884880937 0 0 0 + Y{M(Oxidation (M))|F} 2.1836 + + 9 NaN NaN 184715.8 NaN 5420 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7688 41.314 NaN 293520 35 0 65772 0.261 + 24899 RYQTQPVTL 9 40 553.303596432319 1104.5926399314378 2 553.30322265625 MULTI HCD FTMS 0 0 0 7686 138443.578125 0.2112511172452309 6 -0.16483688354492188 2 Unmodified _RYQTQPVTL_ ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-3|SVIL;nc|ENSG00000197321|O95425-4|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant 12.240655878213236 0.2545997876781172 1 {I|L}{[YC]|[HE]}[VP]T{I|L} 7 4 25.986 0 0 2.3525 0 0 297.16771132636876 0 297.16771132636876 0 25.985994592184554 0 0 0 1 0 0 0 {I|L}{[YC]|[HE]}[VP]T{I|L} 2.3525 - 12 NaN NaN 122786.4 NaN 5421 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7689 41.317 NaN 124360 35 0 15920 0.261 + 5784 FPATGCQKL 9 38 482.7495451361235 963.484537339047 2 482.7490539550781 MULTI HCD FTMS 0 0 0 7686 107853.1484375 0.7310302943395524 5 -0.13853073120117188 3 Unmodified _FPATGCQKL_ ENSG00000137154|ENST00000380394|RPS6 51.629811660486645 0.02929079705179888 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATC(Carbamidomethyl (C))QK{I|L} 8 1 + 70.131 0 0 7.2789 7.2789 85.945 0 0 0 4.965846974768482 54.55767843264759 4.965846974768482 1.1856252710011717 0 1.5 2 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATC(Carbamidomethyl (C))QK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[R{M(Oxidation (M))|F}]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{I|L}{[WT]|[RM]}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[CG]QK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATC(Carbamidomethyl (C))[AG]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{[RE]|[WV]}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{[RE]|[WV]}M{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[CG][AG]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]T[PS]{I|L} 7.2789;7.1558;6.9672;6.6282;6.3176;6.3176;5.7452;5.4328;5.3618;4.6126 -;-;-;-;+;-;-;-;-;- + 110 NaN NaN 115912.8 NaN 5422 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7690 41.321 NaN 365840 35 0 88746 0.261 + 21822 QARYEEEVL 9 42 568.7825113232672 1135.5504697133342 2 568.7822265625 MULTI HCD FTMS 0 0 0 7686 162250.78125 0.8294130628893197 -2 0.06620407104492188 4 Unmodified _QARYEEEVL_ ENSG00000277586|ENST00000610854|NEFL 52.268347100219714 0.028397529699942435 1 QEEV{I|L} 5 4 62.92 0 0 5.5409 0 0 519.2438221662125 0 519.2438221662125 0 49.73197507588033 0 0 0 0.5 0 0.8494850021680094 1.5356668758921828 QEEV{I|L} 5.5409 - 70 NaN NaN 134699 NaN 5423 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7691 41.324 NaN 188720 35 0 45476 0.261 + 16212 LPVTNNIIE 9 59 506.7870771715609 1011.5596014099218 2 506.78668212890625 MULTI HCD FTMS 0 0 0 7686 83175.03125 0.8913368792337104 -1 0.033123016357421875 5 Unmodified _LPVTNNIIE_ REV__ENSG00000166888|ENST00000300134|STAT6;REV__ENST00000557781.5_1_12:57498159-57499088:-|nuORF;REV__nc|ENSG00000166888|P42226-2|STAT6;REV__nc|ENSG00000166888|P42226-3|STAT6;REV__STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant 47.748688679222035 0.03472022231463587 1 {I|L}PVD 4 -1 59.53 0 0 5.885 0 0 0 584.3035372369749 584.3035372369749 44.926361306810406 0 0 0 0 0.805462187404089 1.5228787452803376 0.6694451763165201 0 {I|L}PVD 5.885 - 113 + NaN NaN 111033.8 NaN 5424 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7692 41.327 NaN 98986 35 0 22418 0.261 + 14209 LASLTSIGAL 10 40 473.2845218415903 944.5544907499806 2 473.2839660644531 MULTI HCD FTMS 0 0 0 7686 68864.59375 0.034970259679132705 18 -0.4738731384277344 6 Unmodified _LASLTSIGAL_ REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1 26.88365393820708 0.25965138844209146 1 A{I|L} 2 -1 20.573 0 0 2.1781 0 0 742.4225331037125 0 742.4225331037125 0 7.708033812448605 0 0 0 0.5 0 0 0 A{I|L} 2.1781 + + 16 NaN NaN 92270.6 NaN 5425 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7693 41.331 NaN 99806 35 0 7596.4 0.261 + 31609 VYILIDQND 9 33 546.7833351962965 1091.552117459393 2 546.783203125 MULTI HCD FTMS 0 0 0 7686 18875.73828125 0.6149284588245655 6 -0.16483688354492188 7 Unmodified _VYILIDQND_ REV__tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1 8.593279151180031 0.2858735984551981 1 T{I|L} 2 -1 23.271 0 0 2.1319 0 0 859.4153208355422 0 859.4153208355422 0 7.073259432077563 0 0 0 0.3807196863200844 0 0 0 T{I|L} 2.1319 - 21 NaN NaN 104740.2 NaN 5426 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7694 41.334 NaN 51156 35 0 7601.7 0.261 + 32631 WLTVEGVPFF 10 29 597.8132759152257 1193.6119988972514 2 597.8125610351562 MULTI HCD FTMS 0 0 0 7686 10519.8828125 0.46208752602694364 6 -0.16483688354492188 8 Unmodified _WLTVEGVPFF_ ENSG00000092445|ENST00000263798|TYRO3 1.844237919475145 0.46554186016084764 1 KD 2 10 6.4537 0 0 0.54068 0 0 326.1895878638514 621.2822359674436 947.4718238312951 0 0 0 0 0 0 0 0 0 KD 0.54068 - 7 + NaN NaN 86332.1 NaN 5427 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7695 41.337 NaN 80224 35 0 15898 0.261 + 5609 FLTEHLRVI 9 37 564.3318972500033 1126.6492415668065 2 564.331298828125 MULTI HCD FTMS 0 0 0 7686 22737.84375 1 0 0 9 Unmodified _FLTEHLRVI_ REV__ENSG00000198862|ENST00000361371|LTN1;REV__nc|ENSG00000198862|O94822-3|LTN1 7.289230182591677 0.29575926068275815 1 DAAHN[RV]{I|L} 8 -1 25.283 0 0 2.2441 0 0 232.15761000800939 0 232.15761000800939 0 18.293330022372043 0 0 0 0.28872548999643577 0 0 0 DAAHN[RV]{I|L} 2.2441 - 73 NaN NaN 105658.4 NaN 5428 2265 7686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7697 41.342 NaN 3249700 35 0 330260 0.327 + 21865 QAVRQDPLL 9 93 520.2979945752736 1038.5814362173471 2 520.2978515625 MULTI HCD FTMS 0 0 0 7696 2086335.625 0.4446458366766984 -3 0.09926605224609375 1 Unmodified _QAVRQDPLL_ ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17 133.0521902211835 0.0004198702180815479 1 [QA]VRGADP{I|L}{I|L} 10 2 + 85.023 0 0 8.1865 8.1865 93.217 0 0 0 13.180825616461789 49.12006848005026 13.180825616461789 11.844019683410636 0 2.278659694992122 1 1.0774509799928715 2.4049471895720984 [QA]VRGADP{I|L}{I|L};[QA]VRDQP{I|L}{I|L};[QA]VRGAD{I|L}P{I|L};[QA]VRD[AG]P{I|L}{I|L};QAVRQDP{I|L}{I|L};[QA]VRDQ{I|L}P{I|L};QAVRQD{I|L}P{I|L};QAVR[AG]DP{I|L}{I|L};[QA]VRD[AG]{I|L}P{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}RVAQP{I|L}{I|L} 8.1865;7.0461;6.7024;6.1595;5.7269;5.562;5.0023;4.8403;4.6754;4.6636 -;-;-;-;+;-;-;-;-;- + 1261 NaN NaN 576655.8 NaN 5429 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7698 41.347 NaN 1412200 35 0 132290 0.261 + 18928 NAFKEITTM 9 88 535.7627833297454 1069.5110137262907 2 535.7623901367188 MULTI HCD FTMS 0 0 0 7696 632555.25 0.9526772552075691 1 -0.0263824462890625 2 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 143.90916361153978 1.5265063399744E-05 1 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 117.51 0 0 10.987 10.987 96.638 0 0 0 15.796896906561031 15.796896906561031 15.796896906561031 15.796896906561031 0 3.079689690656103 1.5228787452803376 1.7658715643802767 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NKE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}GGKE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QGE{I|L}TT{M(Oxidation (M))|F};NA{M(Oxidation (M))|F}K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DS]|[MA]|[CV]|TT}E;NA{M(Oxidation (M))|F}KE{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}V];{[MS]|[{M(Oxidation (M))|F}A]}[KG]GE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[AG]GE{I|L}TT{M(Oxidation (M))|F};{[YC]|[HE]}T{I|L}[MT][{I|L}P]E 10.987;9.5099;7.458;6.5971;6.3217;6.0142;5.7883;5.7069;5.4608;3.2482 +;+;-;-;-;-;-;-;-;- + 928 + NaN NaN 313419.3 NaN 5430 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7699 41.35 NaN 124500 35 0 16850 0.261 + 11861 KFCKILWF 8 45 542.8048089953536 1083.595065057507 2 543.79443359375 MULTI HCD FTMS 0 0 0 7696 8351.634765625 1 0 0 3 Unmodified _KFCKILWF_ ENST00000254810.8_2_17:73774615-73774675:-|nuORF 5.760428011301431 0.5334459684533844 1 KSTTD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8 5 41.72 0 0 3.8501 0 0 163.09375377981968 0 163.09375377981968 0 19.50109420336375 0 0 0 0 0 0.7614393726401688 0.6505149978319906 KSTTD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.8501 - 100 + NaN NaN 109720.2 NaN 5431 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7700 41.354 NaN 669980 35 0 150270 0.261 -1 0 96 560.8269481470084 1119.6393433608166 2 560.8267822265625 MULTI HCD FTMS 0 0 0 7696 257379.0625 0.2113354372116315 -5 0.15552139282226562 4 NaN NaN 1 [YV]M[RP]VRS 8 -1 52.389 0 0 4.6791 0 0 0 128.0725392382349 128.0725392382349 18.80510344348764 0 0 0 0 1.524227503252014 2 0.2742275032520141 0.555462187404089 [YV]M[RP]VRS 4.6791 - 615 NaN NaN 186687 NaN 5432 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7701 41.357 NaN 45749 35 0 7497.3 0.261 + 28855 TVNTSLNVYR 10 31 583.8117995657843 1165.6090461983686 2 583.811279296875 MULTI HCD FTMS 0 0 0 7696 27930.517578125 0.38755182064266214 3 -0.07911300659179688 5 Unmodified _TVNTSLNVYR_ ENSG00000113845|ENST00000494664|TIMMDC1 12.240655878213236 0.39661705172222156 1 {[TV]|[{I|L}S]}{[QS]|[NT]}[KG]VE[YR] 10 4 + 36.412 0 0 3.1239 3.1239 88.276 0 0 0 24.98528715244923 5.686362358410122 5.686362358410122 36.41196218813654 0 0 2 0.4247425010840047 0 {[TV]|[{I|L}S]}{[QS]|[NT]}[KG]VE[YR] 3.1239 - 21 + NaN NaN 89367.4 NaN 5433 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7702 41.36 NaN 315540 35 0 42195 0.261 + 15617 LPEEEQQRVL 10 47 620.830243297559 1239.645933661918 2 620.8300170898438 MULTI HCD FTMS 0 0 0 7696 99455.84375 0.0959024193567828 -6 0.18181610107421875 6 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 83.27773906761396 0.001852393573912202 1 {I|L}PEEEQQ 7 3 102.38 0 0 8.2591 0 0 0 383.2406712155969 383.2406712155969 73.71092286673715 0 0 0 0 2.341129063296272 1.3010299956639813 1.5 0.3494850021680094 + {I|L}PEEEQQ 8.2591 + + 678 + NaN NaN 127798.1 NaN 5434 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7703 41.364 NaN 18294 35 0 6938.3 0.261 + 3317 EEIHCYEPQL 10 11 630.7802953921762 1259.5460378511523 2 630.7801513671875 MULTI HCD FTMS 0 0 0 7696 6952.638671875 0.16471370108516906 8 -0.22077560424804688 7 Unmodified _EEIHCYEPQL_ ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-12|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1 0.6976657623105312 0.47161084886498755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98765.6 NaN 5435 2266 7696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7705 41.369 NaN 1048500 35 0 181430 0.327 + 2309 DMHTEVTTL 9 73 531.7421757598927 1061.4697985865853 2 531.74169921875 MULTI HCD FTMS 0 0 0 7704 515956.9375 0.8461196447025835 4 -0.1053924560546875 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 68.08070601005525 0.009709267492204555 1 VTT{I|L} 4 5 52.295 0 0 4.9266 0 0 629.2115042964286 0 629.2115042964286 0 27.15681882079494 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + VTT{I|L} 4.9266 + + 239 NaN NaN 246506.5 NaN 5436 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7706 41.373 NaN 356830 35 0 81377 0.261 + 11216 IYKQRNLS 8 60 511.29278260365544 1020.5710122741109 2 511.2922058105469 MULTI HCD FTMS 0 0 0 7704 109016.234375 0.3570670998872356 -3 0.09256744384765625 2 Unmodified _IYKQRNLS_ REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF 24.67388899826682 0.4122521268485776 1 {I|L}YDR 4 -1 40.93 0 0 4.0105 0 0 0 470.2726891112697 470.2726891112697 23.517193030892397 0 0 0 0 0.6989700043360187 2 0 0.4247425010840047 {I|L}YDR 4.0105 - 60 + NaN NaN 155849.3 NaN 5437 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7707 41.377 NaN 105960 35 0 12311 0.261 + 2392 DPIEMFHSGQ 10 33 580.756829712017 1159.4991064908338 2 581.2711791992188 MULTI HCD FTMS 0 0 0 7704 11118.626953125 0.5284480250651702 12 -0.2958259582519531 3 Unmodified _DPIEMFHSGQ_ ENSG00000105865|ENST00000265720|DUS4L 5.296884461304476 0.4472664531305844 1 S 1 9 6.9897 0 0 0.60282 0 0 164.04624744964218 905.3983255126649 1069.4445729623071 0 0 0 0 0 0 0 0 0 + S 0.60282 + + 81 + NaN NaN 116320.5 NaN 5438 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7708 41.38 NaN 133150 35 0 20697 0.263 + -1 MNSTRRYMRE 10 53 453.87994203616904 1358.617996708707 3 453.879638671875 MULTI HCD FTMS 0 0 0 7704 50590.8046875 0.15556976009054513 -11 0.3039665222167969 4 Oxidation (M) _M(Oxidation (M))NSTRRYMRE_ REV__ENSG00000154678|ENST00000396191|PDE1C;REV__nc|ENSG00000154678|Q14123-2|PDE1C;REV__nc|ENSG00000154678|Q14123-3|PDE1C 7.477065608646677 0.43572640772348226 1 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 -1 27.945 0 0 2.0569 0 0 575.280768921351 0 575.280768921351 0 18.852744048435923 0 0 0 0.8494850021680094 0 0.3252574989159953 0 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 2.0569 - 40 + NaN NaN 112294.8 NaN 5439 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7709 41.383 NaN 23617 35 0 4455.6 0.261 + 31506 VYGDLVDKQY 10 17 600.3006667124818 1198.5867804917634 2 600.300048828125 MULTI HCD FTMS 0 0 0 7704 25729.037109375 0.922200298853206 1 -0.0264129638671875 5 Unmodified _VYGDLVDKQY_ REV__ENSG00000236320|ENST00000674182|SLFN14;REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 3.2813086475875832 0.45793521633868084 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82106 NaN 5440 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7710 41.387 NaN 49925 35 0 5359.9 0.264 + 1900 DAAAVLVSR 9 32 451.2581104589287 900.5016679846574 2 451.2578125 MULTI HCD FTMS 0 0 0 7704 3855.7568359375 0.1039278474550056 2 -0.052730560302734375 6 Unmodified _DAAAVLVSR_ ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD 17.44264345198275 0.2096557692338702 1 WAAV{I|L}V 6 4 33.377 0 0 3.7065 0 0 0 258.1221102350219 258.1221102350219 33.3771376077312 0 0 0 0 1.1237125054200234 0 0 0 WAAV{I|L}V 3.7065 - 31 + NaN NaN 85941.3 NaN 5441 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7711 41.39 NaN 80242 35 0 15486 0.261 + 8143 GPDPKAYQL 9 33 494.7583591133181 987.5021652934362 2 494.7574768066406 MULTI HCD FTMS 0 0 0 7704 41527.5078125 0.6078875832690054 -5 0.15874481201171875 7 Unmodified _GPDPKAYQL_ ENSG00000185803|ENST00000643944|SLC52A2 13.90604991867851 0.24021115267848145 1 PQ{I|L} 3 6 25.93 0 0 2.6258 0 0 631.3028431623062 0 631.3028431623062 0 20.445312593723983 0 0 0 0 0 0 0.4247425010840047 PQ{I|L} 2.6258 - 6 NaN NaN 94511.5 NaN 5442 2267 7704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7713 41.395 NaN 263720 35 0 94273 0.327 + 19269 NLPDNTAVI 9 29 478.7554341624108 NaN 0 478.7554931640625 PEAK HCD FTMS 0 0 0 7712 128102.9296875 0.18084816830565395 -5 0.15206146240234375 1 Unmodified _NLPDNTAVI_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 18.1463463914782 0.1998403495282098 1 V 1 -1 11.99 0 0 1.2548 0 0 131.0941498426168 722.3112845780169 853.4054344206336 0 0 0 0 0 0.5 0 0 0 V 1.2548 + + 2 + NaN NaN 123470 NaN 5443 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7714 41.4 NaN 163580 35 0 51697 0.261 + 7919 GAPAPGVPF 9 41 406.71869875000783 811.4228445668157 2 406.7182312011719 MULTI HCD FTMS 0 0 0 7712 58028.44921875 0.747298758868816 1 -0.026317596435546875 2 Unmodified _GAPAPGVPF_ REV__ENSG00000004777|ENST00000007510|ARHGAP33;REV__nc|ENSG00000004777|O14559-10|ARHGAP33 14.581692164780916 0.23437375358055648 1 [YV]V{[RE]|[WV]}{M(Oxidation (M))|F} 6 -1 + 48.913 0 0 6.0281 6.0281 92.747 0 0 0 33.42863739093026 9.208187539523749 9.208187539523749 48.913187455970544 0 0.9247425010840047 2 0 0 [YV]V{[RE]|[WV]}{M(Oxidation (M))|F} 6.0281 - 17 + NaN NaN 104036 NaN 5444 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7715 41.403 NaN 141120 35 0 14857 0.261 + 35088 YVAFYSNATG 10 42 546.7537337023529 1091.4929144715056 2 546.75341796875 MULTI HCD FTMS 0 0 0 7712 36437.3046875 0.7370318868346578 -1 0.0264129638671875 3 Unmodified _YVAFYSNATG_ ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF 4.3292370932331545 0.45238836448149167 1 SA 2 8 14.949 0 0 1.3695 0 0 0 930.3925981852291 930.3925981852291 -1.7069622716897506 0 -1.7069622716897506 0 0 0 0 0 0 SA 1.3695 - 27 + NaN NaN 104420.7 NaN 5445 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7716 41.406 NaN 94383 35 0 9919.6 0.261 + 18514 MSFFRCIA 8 40 487.73268452094294 973.4508161086859 2 488.24273681640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MSFFRCIA_ ENSG00000173198|ENST00000373304|CYSLTR1 5.230669730166228 0.5342319408533849 1 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}A 4 4 29.208 0 0 3.0005 0 0 0 534.2670992486936 534.2670992486936 9.744237387763093 0 0 0 0 0 1.3010299956639813 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}A 3.0005 - 13 + NaN NaN 104429.9 NaN 5446 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7717 41.41 NaN 45364 35 0 6554.8 0.261 + 18068 MMEVDPLVLT 10 32 574.29089224354 NaN 0 574.2902221679688 PEAK HCD FTMS 0 0 0 7712 11679.2509765625 0.36560797192123656 34 -0.9251823425292969 5 Unmodified _MMEVDPLVLT_ ENSG00000183090|ENST00000329798|FREM3 9.38312468134398 0.33215363477037435 1 {I|L}V 2 8 13.271 0 0 1.1575 0 0 119.06612207688097 812.3299654596311 931.3960875365121 0 0 0 0 0 0.3807196863200844 0 0 0 + {I|L}V 1.1575 + + 5 + NaN NaN 87743.6 NaN 5447 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7718 41.413 NaN 51345 35 0 9185.4 0.261 + 16364 LSAWFLCWHL 10 24 638.3204419905012 1274.6263310478023 2 638.3193969726562 MULTI HCD FTMS 0 0 0 7712 16155.2802734375 0.027492271854689995 19 -0.5033149719238281 6 Unmodified _LSAWFLCWHL_ REV__RTP2|p.R200H|1|0.1|ENSG00000198471|chr3:187698577-187698577|C/T|missense_variant 3.5964929083625545 0.45626689593999237 1 E{I|L} 2 -1 20.969 0 0 1.6451 0 0 1014.4832630841812 0 1014.4832630841812 0 11.989700043360187 0 0 0 0 0 0 0 E{I|L} 1.6451 - 5 NaN NaN 90088.7 NaN 5448 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7719 41.416 NaN 28738 35 0 4303.4 0.261 + -1 EFRRRFIC 8 23 613.315126407072 1224.6156998809438 2 613.3140869140625 MULTI HCD FTMS 0 0 0 7712 14058.48046875 0.7090447972556849 3 -0.0789794921875 7 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))EFRRRFIC(Carbamidomethyl (C))_ REV__ENST00000475863.5_1_2:74734261-74734303:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89646.3 NaN 5449 2268 7712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7721 41.421 NaN 347960 35 0 50624 0.326 + 18301 MPEKEPSVL 9 57 515.2679422473905 1028.5213315615808 2 515.267822265625 MULTI HCD FTMS 0 0 0 7720 203590.578125 0.88961859688234 1 -0.026355743408203125 1 Unmodified _MPEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 43.981846655682396 0.04706587046877104 1 KE[PS]V{I|L} 6 3 37.101 0 0 3.6072 0 0 357.13508803535314 0 357.13508803535314 0 12.408037477650637 0 0 0 1.3494850021680094 0 1.0752574989159953 0 + KE[PS]V{I|L} 3.6072 + + 134 NaN NaN 142285 NaN 5450 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7722 41.426 NaN 214020 35 0 49216 0.261 + 35397 YYEEQHPEL 9 32 604.2670896750219 1206.5196264168437 2 604.2665405273438 MULTI HCD FTMS 0 0 0 7720 89067.984375 0.038709554266149526 20 -0.5330009460449219 2 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 63.227496030279354 0.01306643085373406 1 YYEEQH 6 3 88.493 0 0 7.3345 0 0 0 354.1662691705688 354.1662691705688 81.5030565586067 0 0 0 0 2.079689690656103 2 0.805462187404089 0 + YYEEQH 7.3345 + + 88 + NaN NaN 115882.7 NaN 5451 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7723 41.429 NaN 85667 35 0 29284 0.264 + 16346 LRRSFSRCMF 10 29 434.8896136935682 NaN 0 434.8818359375 PEAK HCD FTMS 0 0 0 7720 2616.60400390625 0.6212636886737735 1 -0.026355743408203125 3 Unmodified _LRRSFSRCMF_ REV__ENSG00000138271|ENST00000260843|GPR87 0.776531954647913 0.3395196853010637 1 N 1 -1 3.0989 0 0 0.35712 0 0 429.8244411549114 320.88276086978755 750.707202024699 0 0 0 0 0 0 0 0 0 N 0.35712 - 1 + NaN NaN 114407.1 NaN 5452 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7724 41.433 NaN 42335 35 0 4291.5 0.261 + 3626 ELCEIAKEI 9 29 524.2730651539209 1046.5315773746418 2 524.2721557617188 MULTI HCD FTMS 0 0 0 7720 14071.6572265625 0.49838476233904955 1 -0.026355743408203125 4 Unmodified _ELCEIAKEI_ REV__ENSG00000163092|ENST00000409195|XIRP2;REV__nc|ENSG00000163092|A4UGR9-2|XIRP2;REV__nc|ENSG00000163092|A4UGR9-3|XIRP2;REV__nc|ENSG00000163092|A4UGR9|XIRP2;REV__XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant;REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 104161.4 NaN 5453 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7725 41.436 NaN 82150 35 0 12485 0.261 -1 RYGSDFYSM 9 41 571.2342240409885 1140.4538951487768 2 571.2337646484375 MULTI HCD FTMS 0 0 0 7720 11764.7841796875 0.4116411399939589 -5 0.14529800415039062 5 Oxidation (M) _RYGSDFYSM(Oxidation (M))_ ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 10.799506525563784 0.2670509983294061 1 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4 -1 34.412 0 0 3.0174 0 0 578.246385642775 0 578.246385642775 0 27.422750325201406 0 0 0 1 0 0 0 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 3.0174 + + 22 NaN NaN 107314.9 NaN 5454 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7726 41.439 NaN 44702 35 0 4549.5 0.261 -1 YPESESIMM 9 22 559.7230933114936 1117.431633689787 2 559.7219848632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 26.198 0 0 2.3445 0 0 805.3504091798246 0 805.3504091798246 0 26.197887582883936 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3445 + + 24 + NaN NaN 98926.2 NaN 5455 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7727 41.443 NaN 58887 35 0 4328 0.263 + 29710 VDEKTKSIYDL 11 42 437.56554577458456 NaN 0 437.55279541015625 PEAK HCD FTMS 0 0 0 7720 8820.755859375 0.6682322579270542 -1 0.026317596435546875 7 Unmodified _VDEKTKSIYDL_ REV__ENSG00000134215|ENST00000370056|VAV3;REV__ENST00000343258.8_1_1:108115955-108328118:-|nuORF;REV__nc|ENSG00000134215|Q9UKW4-2|VAV3;REV__nc|ENSG00000134215|Q9UKW4-4|VAV3 1.4551175022131473 0.3379923941668102 1 Y 1 -1 4.6041 0 0 0.52732 0 0 226.78384926225664 480.2534273736938 707.0372766359504 0 0 0 0 0 0 0 0 0 Y 0.52732 + + 3 + NaN NaN 92471.7 NaN 5456 2269 7720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7729 41.448 NaN 732300 35 0 60994 0.327 + 22330 QPKKIKEDYF 10 64 432.57101821098746 1294.6912252331624 3 432.57110595703125 MULTI HCD FTMS 0 0 0 7728 242578.65625 1 0 0 1 Unmodified _QPKKIKEDYF_ ENSG00000123594|ENST00000380622|ATXN3L 14.957161354070239 0.3712077760547347 1 Y{M(Oxidation (M))|F} 2 8 28.271 0 0 2.1836 0 0 966.5503562314835 0 966.5503562314835 0 13.322646798160562 0 0 0 0.7302046884880937 0 0 0 + Y{M(Oxidation (M))|F} 2.1836 + + 25 NaN NaN 188107.6 NaN 5457 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7730 41.452 NaN 280040 35 0 68554 0.261 + 26191 SPQSNSPVL 9 40 464.73987349755924 927.4651940619185 2 464.7396240234375 MULTI HCD FTMS 0 0 0 7728 151878.984375 0.8819171977689169 1 -0.02630615234375 2 Unmodified _SPQSNSPVL_ ENSG00000183624|ENST00000383463|HMCES 24.020572477871973 0.15282392193088168 1 ES[VP]{I|L} 5 5 34.437 0 0 3.713 0 0 384.186815330275 0 384.186815330275 0 24.744237387763093 0 0 0 1.3494850021680094 0 0.3494850021680094 0 ES[VP]{I|L} 3.713 - 48 NaN NaN 139823.5 NaN 5458 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7731 41.456 NaN 327270 35 0 59751 0.261 + 13386 KYPASTVQI 9 47 503.7819528815282 1005.5493528298564 2 503.7814025878906 MULTI HCD FTMS 0 0 0 7728 79504.2109375 0.9611932181284889 1 -0.02630615234375 3 Unmodified _KYPASTVQI_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 28.494509381512117 0.11816142465008336 1 [YK][PA]STVQ{I|L} 9 0 + 39.389 0 0 3.9172 3.9172 82.953 0 0 0 0.3913622748569239 19.92538423561819 0.3913622748569239 6.9897000433601875 0 0.75 0 0.3807196863200844 0 + + [YK][PA]STVQ{I|L};[YK]Q{NN|[MP]|[D{I|L}]|[EV]}VQ{I|L};[{M(Oxidation (M))|F}V]{[NV]|[RG]}STVQ{I|L};[YK][PA]STV[AG]{I|L};[YK][AG]{NN|[MP]|[D{I|L}]|[EV]}VQ{I|L};[YK]Q{NN|[MP]|[D{I|L}]|[EV]}V[AG]{I|L};[{M(Oxidation (M))|F}V]{[NV]|[RG]}STV[AG]{I|L} 3.9172;3.2221;3.0203;3.0015;2.301;2.301;2.1046 +;-;-;-;-;-;- + 51 NaN NaN 133532.8 NaN 5459 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7732 41.459 NaN 209780 35 0 29438 0.261 + 10768 ISHHTTVPLT 10 46 553.303596432319 1104.5926399314378 2 553.3034057617188 MULTI HCD FTMS 0 0 0 7728 50435.0234375 0.07695882462559171 11 -0.2793464660644531 4 Unmodified _ISHHTTVPLT_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7 9.38312468134398 0.42334543440173333 1 D{I|L} 2 9 7.9588 0 0 0.72052 0 0 209.13794130038156 664.3175753229124 873.455516623294 0 0 0 0 0 0 0 0 0 D{I|L} 0.72052 - 21 + NaN NaN 115827.4 NaN 5460 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7733 41.462 NaN 93311 35 0 17771 0.261 -1 SYMPTVSHL 9 31 525.7492701648763 1049.4839873965525 2 525.7490844726562 MULTI HCD FTMS 0 0 0 7728 27882.626953125 0.8457132373248507 -1 0.026355743408203125 5 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ ENSG00000168000|ENST00000360796|BSCL2;nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2 20.453626601364224 0.18364154288633264 1 W{M(Oxidation (M))|F}Q 3 -1 21.555 0 0 2.0538 0 0 63.99604538929993 521.2596529596311 585.2556983489311 0 0 0 0 0 0.6861818737241735 0 0 0 W{M(Oxidation (M))|F}Q 2.0538 - 24 + NaN NaN 98977.4 NaN 5461 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7734 41.466 NaN 53577 35 0 8915.4 0.261 -1 NYIMKIHNF 9 32 598.2995111186456 1194.584469304091 2 598.8012084960938 MULTI HCD FTMS 0 0 0 7728 25446.48828125 0.69195000005311 -9 0.2609901428222656 6 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 24.020572477871973 0.15282392193088168 1 [YN]{I|L} 3 -1 35.458 0 0 2.9682 0 0 0 801.3723205913487 801.3723205913487 15.993624753846092 0 0 0 0 0.5 2 0 0 [YN]{I|L} 2.9682 + + 19 + NaN NaN 90855.6 NaN 5462 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7735 41.469 NaN 103520 35 0 11637 0.262 + 9674 HVIHACGEI 9 51 489.74419222921 977.47383152522 2 489.7437744140625 MULTI HCD FTMS 0 0 0 7728 31427.392578125 0.6640529468614026 -6 0.17165374755859375 7 Unmodified _HVIHACGEI_ REV__ENSG00000116761|ENST00000370938|CTH;REV__nc|ENSG00000116761|P32929-3|CTH 11.640296217721598 0.25978676193971967 1 E{I|L} 2 -1 24.024 0 0 2.4577 0 0 717.3400746076187 0 717.3400746076187 0 4.559771852360797 0 0 0 0.3054621874040891 0 0 0 E{I|L} 2.4577 + + 21 NaN NaN 118412.5 NaN 5463 2270 7728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7737 41.474 NaN 173210 35 0 50186 0.327 + 21823 QARYEEEVL 9 38 568.7825113232672 1135.5504697133342 2 568.7822265625 MULTI HCD FTMS 0 0 0 7736 72565.6484375 0.3709498115658315 4 -0.11532211303710938 1 Unmodified _QARYEEEVL_ ENSG00000277586|ENST00000610854|NEFL 19.256988751693697 0.19398022840297344 1 E[PG]EEV{I|L} 7 5 27.803 0 0 2.4485 0 0 364.17036635566564 0 364.17036635566564 0 23.199397642263335 0 0 0 0.5 0 0.3807196863200844 0 E[PG]EEV{I|L} 2.4485 - 14 NaN NaN 122830.3 NaN 5464 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7738 41.479 NaN 127090 35 0 15630 0.261 + 15323 LPASPETHL 9 42 482.7585400179012 963.5025271026025 2 482.7489929199219 MULTI HCD FTMS 0 0 0 7736 27993.025390625 0.8731429818390234 1 -0.0296630859375 2 Unmodified _LPASPETHL_ ENSG00000141736|ENST00000269571|ERBB2;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-4|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2 19.256988751693697 0.19398022840297344 1 {I|L}MAT 4 6 50.974 0 0 5.2905 0 0 0 544.2571505182249 544.2571505182249 25.28782221775522 0 0 0 0 0 1.5228787452803376 0.3807196863200844 0 {I|L}MAT 5.2905 - 62 + NaN NaN 96132.3 NaN 5465 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7739 41.482 NaN 84683 35 0 15905 0.261 + 14817 LITDADTCP 9 29 474.72063611350353 947.4267192938071 2 474.7204284667969 MULTI HCD FTMS 0 0 0 7736 16487.671875 0.354422339928861 4 -0.11532211303710938 3 Unmodified _LITDADTCP_ ENST00000287701.14_1_8:28909738-28909819:+|nuORF 7.910154910731844 0.2910521888787154 1 C 1 8 1.5938 0 0 0.16822 0 0 548.4438284408883 292.9509371393188 841.3947655802071 0 0 0 0 0 0 0 0 0 + C 0.16822 + + 1 + NaN NaN 104532.4 NaN 5466 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7740 41.485 NaN 97313 35 0 7533.9 0.261 + -1 HVTGRYVM 8 44 489.74419222921 977.47383152522 2 489.74334716796875 MULTI HCD FTMS 0 0 0 7736 18944.923828125 0.4003015033734554 -5 0.13177490234375 4 Oxidation (M) _HVTGRYVM(Oxidation (M))_ REV__ENSG00000130032|ENST00000674457|PRRG3 9.347437153973935 0.5250182646323369 1 E{I|L} 2 -1 20.969 0 0 2.1452 0 0 717.3425854216518 0 717.3425854216518 0 3.4948500216800937 0 0 0 0 0 0 0 E{I|L} 2.1452 - 27 NaN NaN 95021 NaN 5467 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7741 41.489 NaN 57697 35 0 6470.8 0.261 -1 LQLTMQLM 8 33 497.25837404945185 NaN 0 497.2589111328125 PEAK HCD FTMS 0 0 0 7736 4161.70556640625 0.19084956809265996 -6 0.16483688354492188 5 Oxidation (M) _LQLTMQLM(Oxidation (M))_ ENST00000294072.8_2_11:61116428-61116869:-|nuORF 8.593279151180031 0.38822285293237185 1 Q 1 -1 5.4846 0 0 0.5526 0 0 131.09245147225153 730.3305758111936 861.4230272834452 0 0 0 0 0 0 0 0 0 Q 0.5526 + + 1 + NaN NaN 85004.4 NaN 5468 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7742 41.492 NaN 207020 35 0 41536 0.261 + 4289 EVNDPSLTIK 10 58 558.3004327160419 1114.5863124988837 2 558.3001098632812 MULTI HCD FTMS 0 0 0 7736 30504.12890625 0.11499451906164922 -4 0.1053924560546875 6 Unmodified _EVNDPSLTIK_ ENSG00000198712|ENST00000361739|MT-CO2 8.97624648632007 0.42715123575657504 1 {NN|[MP]|[D{I|L}]|[EV]}ND[PS]{I|L}T[K{I|L}] 10 0 + 20.915 0 0 1.8765 1.8765 82.759 0 0 0 1.4858049805479112 1.4858049805479112 1.4858049805479112 9.164539485499251 0 0 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}ND[PS]{I|L}T[K{I|L}];{NN|[MP]|[D{I|L}]|[EV]}GGD[PS]{I|L}T[K{I|L}] 1.8765;1.0543 +;- + 234 + NaN NaN 119707 NaN 5469 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7743 41.495 NaN 21074 35 0 2872 0.261 -1 LEFHHQRFI 9 20 634.8315870299115 NaN 0 634.8311157226562 PEAK HCD FTMS 0 0 0 7736 15866.744140625 1 0 0 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LEFHHQRFI_ ENST00000595381.1_1_19:17447499-17447759:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80955.3 NaN 5470 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7744 41.499 NaN 56357 35 0 5929.6 0.264 + 16279 LQNFYRKNDL 10 43 437.56535977236996 NaN 0 437.5654602050781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LQNFYRKNDL_ REV__tr|U7SMA9|U7SMA9_FUSNU4-methyl-5(B-hydroxyethyl)-thiazolemonophosphatebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01884PE=4SV=1 0.776531954647913 0.3395196853010637 1 P 1 -1 6.9897 0 0 0.80055 0 0 195.27365059767118 577.7799166315061 773.0535672291774 0 0 0 0 0 0 0 0 0 P 0.80055 - 1 + NaN NaN 100639 NaN 5471 2271 7736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7746 41.504 NaN 5139100 35 0 521940 0.327 + 21866 QAVRQDPLL 9 103 520.2979945752736 1038.5814362173471 2 520.2980346679688 MULTI HCD FTMS 0 0 0 7745 3495105 0.744886809378003 3 -0.08565902709960938 1 Unmodified _QAVRQDPLL_ ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17 133.0521902211835 0.0004198702180815479 1 [QA]VRGADP{I|L}{I|L} 10 2 + 86.046 0 0 8.2849 8.2849 93.633 0 0 0 12.381835290187553 54.82347438861228 12.381835290187553 12.596594672570589 0 2.329689690656103 0.9208187539523752 1.25 2.2658715643802765 [QA]VRGADP{I|L}{I|L};[QA]VRDQP{I|L}{I|L};[QA]VRGAD{I|L}P{I|L};[Q{I|L}]GRGADP{I|L}{I|L};[QA]VRD[AG]P{I|L}{I|L};QAVRQDP{I|L}{I|L};[QA]VRDQ{I|L}P{I|L};[Q{I|L}][RN]ADP{I|L}{I|L};[Q{I|L}]GRDQP{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}RVAQP{I|L}{I|L} 8.2849;7.072;6.8215;6.5402;6.1854;5.8214;5.6087;5.5662;5.3273;5.2217 -;-;-;-;-;+;-;-;-;- + 1239 NaN NaN 656855 NaN 5472 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7747 41.508 NaN 1719000 35 0 401700 0.261 -1 0 124 560.8269481470084 1119.6393433608166 2 560.82666015625 MULTI HCD FTMS 0 0 0 7745 1044552.5 0.8576881007094457 1 -0.036342620849609375 2 NaN NaN 1 VY{I|L}DRVR 7 -1 87.929 0 0 7.8534 0 0 0 215.10405908756096 215.10405908756096 42.70258526534029 0 0 0 0 2.1549471895720984 2 0.3054621874040891 2.142159058960253 VY{I|L}DRVR 7.8534 - 3851 + NaN NaN 337291 NaN 5473 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7748 41.512 NaN 1756800 35 0 246610 0.261 + 15618 LPEEEQQRVL 10 92 620.830243297559 1239.645933661918 2 620.8297119140625 MULTI HCD FTMS 0 0 0 7745 1037052.5 1 0 0 3 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 179.28349886687624 4.545700307145465E-16 1 {I|L}PEEEQQRV{I|L} 10 0 + 120.89 0 0 9.7523 9.7523 92.725 0 0 0 73.9915373680605 8.379231027444405 8.379231027444405 9.077438373132864 0 3.309894379144197 1.3979400086720375 1.1237125054200234 0.6203715150305281 + + {I|L}PEEEQQRV{I|L};[{I|L}P]EEEQQRV{I|L};{I|L}PEEEQ[AG]RV{I|L};{I|L}PEEE[AG]QRV{I|L};[EP]{I|L}EEQQRV{I|L};{I|L}PEEEQQ{I|L}[RV];[{I|L}P]EEEQ[AG]RV{I|L};{I|L}PEEE[AG][AG]RV{I|L};[EP]E{I|L}EQQRV{I|L};[{I|L}P]EEE[AG]QRV{I|L} 9.7523;9.0201;9.013;9.013;8.7782;8.7234;8.2808;8.2767;8.2098;8.0699 +;+;-;-;-;-;-;-;-;- + 7137 + NaN NaN 349761.6 NaN 5474 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7749 41.515 NaN 1070800 35 0 93398 0.262 + 18929 NAFKEITTM 9 79 535.7627833297454 1069.5110137262907 2 535.7623291015625 MULTI HCD FTMS 0 0 0 7745 440171 0.6629316571192332 7 -0.16077041625976562 4 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 195.45211591753656 1.8365487807996522E-14 1 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 113.48 0 0 10.61 10.61 90.96 0 0 0 3.6207188412079887 3.6207188412079887 3.6207188412079887 3.6207188412079887 0 3.0189301784845295 1.5228787452803376 1.7249073637206092 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}K[KG]{M(Oxidation (M))|F} 10.61;10.272;2.5713;2.4692;0.86998 +;+;-;-;- + 600 + NaN NaN 248205 NaN 5475 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7750 41.518 NaN 98209 35 0 14939 0.262 + 11898 KFIDTTSKF 9 31 543.79515636783 1085.57575980246 2 543.7943725585938 MULTI HCD FTMS 0 0 0 7745 69954.359375 0.008203547813324922 72 -2.030853271484375 5 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 40.72490554402381 0.06201705472789164 1 K{M(Oxidation (M))|F}{I|L}D 4 5 46.983 0 0 4.3279 0 0 0 579.2773531549436 579.2773531549436 11.805234507957891 0 0 0 0 1 0 0.805462187404089 0 + K{M(Oxidation (M))|F}{I|L}D 4.3279 + + 26 + NaN NaN 97390.6 NaN 5476 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7751 41.522 NaN 71805 35 0 15340 0.261 + 14085 KYWFQNVR 8 30 570.8002987143708 1139.5860444955415 2 570.800048828125 MULTI HCD FTMS 0 0 0 7745 39438.5859375 0.848153887976204 1 -0.036342620849609375 6 Unmodified _KYWFQNVR_ REV__ENSG00000101343|ENST00000536226|CRNKL1;REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;REV__nc|ENSG00000101343|Q9BZJ0|CRNKL1 4.75600775471527 0.5349361699807423 1 KY 2 -1 25.217 0 0 2.2128 0 0 0 845.4041363652348 845.4041363652348 9.01863755803667 0 0 0 0 0.4247425010840047 0 0 0 KY 2.2128 + + 16 + NaN NaN 97557.9 NaN 5477 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7752 41.525 NaN 168830 35 0 15512 0.261 + 29383 TYQEVAQKF 9 41 557.2821582971296 1112.5497636610592 2 557.2814331054688 MULTI HCD FTMS 0 0 0 7745 53275.375 0.3750496913143652 -4 0.108642578125 7 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 110.79276546118962 0.0028129822227594098 1 [YT]QEVAQK{M(Oxidation (M))|F} 9 0 + 111.19 0 0 9.9946 9.9946 93.79 0 0 0 3.133345013315264 3.133345013315264 3.133345013315264 9.208187539523749 0 3.079689690656103 2 0.3494850021680094 0.7059771852360797 + + [YT]QEVAQK{M(Oxidation (M))|F};[YT][AG]EVAQK{M(Oxidation (M))|F};[YT]QEVA[AG]K{M(Oxidation (M))|F};[YT][AG]EVA[AG]K{M(Oxidation (M))|F};[YT]QEVA[KG]A{M(Oxidation (M))|F};[YT][AG]EVA[KG]A{M(Oxidation (M))|F};[YT]QEV[KQ]A{M(Oxidation (M))|F};[YT][AG]EV[KQ]A{M(Oxidation (M))|F} 9.9946;9.1669;9.1669;8.3432;6.9875;6.1637;5.7262;4.8985 +;-;-;-;-;-;-;- + 333 + NaN NaN 102680.6 NaN 5478 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7753 41.528 NaN 176180 35 0 16050 0.262 + -1 VSPGYETEMRF 11 67 458.5401212122798 1372.5985342370395 3 458.5393371582031 MULTI HCD FTMS 0 0 0 7745 41721.60546875 0.5661603765323715 -9 0.26070404052734375 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 5.523293073838413 0.3946973793746473 1 [Y{I|L}]C 3 -1 23.557 0 0 1.7162 0 0 0 990.4195540947145 990.4195540947145 0.08355938871737578 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]C 1.7162 - 38 NaN NaN 113242.9 NaN 5479 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7754 41.532 NaN 16002 35 0 3124.5 0.261 + 19334 NPDDLQEANKL 11 16 628.8089189577868 NaN 0 628.8095092773438 PEAK HCD FTMS 0 0 0 7745 17325.9296875 0.7069355402207398 1 -0.036342620849609375 9 Unmodified _NPDDLQEANKL_ ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3 8.97624648632007 0.31665711721025436 1 NA 2 9 15.217 0 0 1.2119 0 0 259.1933861560047 808.3216646783811 1067.5150508343859 0 0 0 0 0 0 0 0 0.4247425010840047 NA 1.2119 - 6 + NaN NaN 81973.5 NaN 5480 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7755 41.535 NaN 76207 35 0 5165.7 0.263 + 2423 DPSEPRTPV 9 47 499.25141305295324 996.4882731727065 2 499.25189208984375 MULTI HCD FTMS 0 0 0 7745 9756.619140625 0.5145402171221529 1 -0.036342620849609375 10 Unmodified _DPSEPRTPV_ ENSG00000115020|ENST00000264380|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-3|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE 7.289230182591677 0.29575926068275815 1 [WK]{[RE]|[WV]}H{[QN]|[E{I|L}]|[KN]} 7 7 + 13.485 0 0 1.3532 1.3532 85.463 0 0 0 2.798406965940428 3.027194418743802 2.798406965940428 13.484769324350552 0 0 0 0.5 0 [WK]{[RE]|[WV]}H{[QN]|[E{I|L}]|[KN]} 1.3532 - 31 + NaN NaN 91832.2 NaN 5481 2272 7745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7757 41.54 NaN 1051100 35 0 397260 0.327 + 9682 HVSDTSVVL 9 35 478.7554341624108 NaN 0 478.7555236816406 PEAK HCD FTMS 0 0 0 7756 708345.1875 1 0 0 1 Unmodified _HVSDTSVVL_ CON__P07744;CON__P13647;CON__P19013;CON__Q5XQN5;CON__Q922U2;ENSG00000170477|ENST00000551956|KRT4;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 28.486842064014134 0.13043271994793734 1 VVS 3 7 29.737 0 0 3.1122 0 0 131.0938995530965 536.2124117486936 667.3063113017902 0 0 0 0 0 0.805462187404089 0 0.8494850021680094 0 VVS 3.1122 - 9 + NaN NaN 239454.6 NaN 5482 2273 7756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7758 41.545 NaN 570770 35 0 95632 0.261 + 2310 DMHTEVTTL 9 58 531.7421757598927 1061.4697985865853 2 531.7417602539062 MULTI HCD FTMS 0 0 0 7756 273053.1875 0.4477809080576766 10 -0.24303054809570312 2 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 46.020951573049366 0.037705236580089195 1 VTT{I|L} 4 5 52.18 0 0 4.9159 0 0 629.2101917951187 0 629.2101917951187 0 39.73320034371433 0 0 0 1.3252574989159953 0 0.8494850021680094 0 + VTT{I|L} 4.9159 + + 150 NaN NaN 171889.4 NaN 5483 2273 7756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7759 41.548 NaN 598900 35 0 72477 0.261 -1 TIGVDFEMERF 11 83 453.87994203616904 1358.617996708707 3 453.8797607421875 MULTI HCD FTMS 0 0 0 7756 239828.375 0.7374866439093007 -5 0.14498519897460938 3 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 19.143941131932106 0.2902806250200643 1 QW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 6 -1 45.597 0 0 3.3561 0 0 447.2212204409321 0 447.2212204409321 0 35.987920352523886 0 0 0 1.3494850021680094 0 0.3252574989159953 0 QW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 3.3561 - 302 + NaN NaN 175651.2 NaN 5484 2273 7756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7760 41.551 NaN 279770 35 0 50746 0.261 + 10462 IPDLDRHQL 9 51 553.8013834762588 1105.5882140193175 2 553.8009643554688 MULTI HCD FTMS 0 0 0 7756 110168.9296875 1 0 0 4 Unmodified _IPDLDRHQL_ ENSG00000166171|ENST00000370151|DPCD 29.43715596616401 0.11383414875064776 1 {I|L}PD{I|L}[RD]HQ{I|L} 9 0 + 48.681 0 0 4.4032 4.4032 82.493 0 0 0 31.99864366769574 6.826440444176214 6.826440444176214 4.476664759506974 0 1.610924374808178 0 0.4247425010840047 0.3252574989159953 + + {I|L}PD{I|L}[RD]HQ{I|L};{I|L}PD{I|L}H[RD]Q{I|L};[DP]{I|L}D[R{I|L}]HQ{I|L};[DP]{I|L}D[RH]{I|L}Q{I|L};[DP]{I|L}D[RH]Q{I|L}{I|L};[DP]{I|L}D[R{I|L}]H[AG]{I|L};[DP]{I|L}D[RH]{I|L}[AG]{I|L};[DP]{I|L}D[R{I|L}]A{[HG]|PP}{I|L};[DP]{I|L}A[RD]{I|L}{[HG]|PP}{I|L};[DP]{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[HG]|PP}{I|L} 4.4032;3.9983;2.9938;2.7175;2.2884;2.161;1.8847;1.8242;1.7792;1.7071 +;-;-;-;-;-;-;-;-;- + 221 + NaN NaN 132437.6 NaN 5485 2273 7756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7761 41.555 NaN 90386 35 0 16169 0.261 + 8144 GPDPKAYQL 9 29 494.7583591133181 987.5021652934362 2 494.7580871582031 MULTI HCD FTMS 0 0 0 7756 35639.6796875 0.5217004317122681 1 -0.0229949951171875 5 Unmodified _GPDPKAYQL_ ENSG00000185803|ENST00000643944|SLC52A2 13.90604991867851 0.24021115267848145 1 Q{I|L} 2 7 25.217 0 0 2.5536 0 0 728.3494437283316 0 728.3494437283316 0 19.731975075880328 0 0 0 0 0 0 0.4247425010840047 + Q{I|L} 2.5536 + + 6 NaN NaN 99340.7 NaN 5486 2273 7756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7762 41.558 NaN 193850 35 0 35744 0.261 + 21504 PYGNIQSRL 9 41 524.2823057348369 1046.5500585364737 2 524.281982421875 MULTI HCD FTMS 0 0 0 7756 88175.5078125 0.463832691435501 -5 0.14498519897460938 6 Unmodified _PYGNIQSRL_ ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF 57.24910588100465 0.021429789259086996 1 PYGN{I|L}QSR{I|L} 9 0 + 94.403 0 0 9.0204 9.0204 92.99 0 0 0 70.59054065780998 8.256886463274284 8.256886463274284 9.208187539523749 0 2.1549471895720984 2 0 0 + + PYGN{I|L}QSR{I|L};PYGN{I|L}[AG]SR{I|L};PYGGG{I|L}QSR{I|L};PYGGG{I|L}[AG]SR{I|L} 9.0204;8.1405;8.1405;7.2648 +;-;-;- + 145 + NaN NaN 108043.2 NaN 5487 2273 7756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7764 41.563 NaN 226300 35 0 29083 0.327 -1 YVSRMKET 8 52 515.2535249219831 NaN 0 515.2674560546875 PEAK HCD FTMS 0 0 0 7763 7711.95654296875 0.7585049917267991 -1 0.0229949951171875 1 Oxidation (M) _YVSRM(Oxidation (M))KET_ ENSG00000096384|ENST00000371646|HSP90AB1 8.593279151180031 0.38822285293237185 1 {M(Oxidation (M))|F}AE 3 -1 13.812 0 0 1.343 0 0 132.1236771671118 546.2331026666624 678.3567798337742 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AE 1.343 - 46 + NaN NaN 117284 NaN 5488 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7765 41.568 NaN 161830 35 0 35783 0.261 + 35398 YYEEQHPEL 9 37 604.2670896750219 1206.5196264168437 2 604.2662963867188 MULTI HCD FTMS 0 0 0 7763 78623.828125 0.03417045263540692 25 -0.6681976318359375 2 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 47.594388314883695 0.03493607795751234 1 YYEEQH 6 3 84.686 0 0 7.019 0 0 0 354.1670321100219 354.1670321100219 77.69585969540586 0 0 0 0 1.6549471895720984 2 0.8494850021680094 0 + YYEEQH 7.019 + + 38 + NaN NaN 114321.1 NaN 5489 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7766 41.571 NaN 342640 35 0 38549 0.263 + 2381 DPGRDYEL 8 63 482.72206866953013 963.4295844058603 2 482.7214050292969 MULTI HCD FTMS 0 0 0 7763 100650.2109375 0.13360444993809276 -6 0.16798019409179688 3 Unmodified _DPGRDYEL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 32.78568957990786 0.32360605643721263 1 DE{I|L} 3 5 27.312 0 0 2.8349 0 0 588.2657649706199 0 588.2657649706199 0 0.5721727312302072 0 0 0 0.28872548999643577 0 0.2742275032520141 0 DE{I|L} 2.8349 - 337 NaN NaN 130645.4 NaN 5490 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7767 41.574 NaN 116150 35 0 14161 0.261 + 9709 HVVPSAEEL 9 36 490.7557185321538 979.4968841311077 2 490.7551574707031 MULTI HCD FTMS 0 0 0 7763 47397.7109375 0.8659879208034984 -2 0.059337615966796875 4 Unmodified _HVVPSAEEL_ ENSG00000183111|ENST00000333677|ARHGEF37 26.88365393820708 0.12808753336095696 1 EE{I|L} 3 6 30.445 0 0 3.1083 0 0 590.3158810020954 0 590.3158810020954 0 17.909393809954892 0 0 0 0.4247425010840047 0 0 0 + EE{I|L} 3.1083 + + 20 NaN NaN 103367.2 NaN 5491 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7768 41.578 NaN 68084 35 0 4719.6 0.261 + 20635 PFEVNNEPF 9 42 546.7537337023529 1091.4929144715056 2 546.75341796875 MULTI HCD FTMS 0 0 0 7763 17402.982421875 0.3520170627589018 5 -0.10143280029296875 5 Unmodified _PFEVNNEPF_ REV__ENST00000462994.1_1_10:103547260-103547323:-|nuORF 4.75600775471527 0.31496297302216103 1 {I|L}D 2 -1 10.969 0 0 1.005 0 0 261.98926564513687 598.3673800104124 860.3566456555493 0 0 0 0 0 0 0 0 0 {I|L}D 1.005 - 11 + NaN NaN 95592.4 NaN 5492 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7769 41.581 NaN 164680 35 0 19924 0.263 + 25006 RYVRKFVLM 9 58 404.573902147879 1210.699877043837 3 404.57379150390625 MULTI HCD FTMS 0 0 0 7763 23109.607421875 0.6206223407318759 -11 0.3200416564941406 6 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 7.910154910731844 0.2910521888787154 1 {I|L}M 2 7 29.776 0 0 2.4594 0 0 948.5643260618181 0 948.5643260618181 0 14.203103093438969 0 0 0 0.8807196863200843 0 0 0 + {I|L}M 2.4594 + + 17 NaN NaN 101440.1 NaN 5493 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7770 41.584 NaN 44868 35 0 8072.3 0.261 + 29012 TYEITYYYE 9 21 622.7708651516012 NaN 0 622.7705688476562 PEAK HCD FTMS 0 0 0 7763 12994.478515625 0.6645348766362484 1 -0.0263214111328125 7 Unmodified _TYEITYYYE_ tr|U7SUD1|U7SUD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01109PE=4SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92715.8 NaN 5494 2274 7763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7772 41.589 NaN 172740 35 0 34461 0.327 + 16468 LSTCFGGF 8 51 416.18981231128816 NaN 0 416.1976318359375 PEAK HCD FTMS 0 0 0 7771 3753.4580078125 0.9064731777247471 -1 0.0263214111328125 1 Unmodified _LSTCFGGF_ ADAM29|p.K264Nfs*29|1|0.14|ENSG00000168594|chr4:174976313-174976313|G/-|frameshift_variant;ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant;ENSG00000168594|ENST00000359240|ADAM29;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29 10.183394434864962 0.38822285293237185 1 {M(Oxidation (M))|F}D 2 7 7.0783 0 0 0.85244 0 0 433.19977125167946 132.04583154849846 565.245602800178 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D 0.85244 - 6 + NaN NaN 112438 NaN 5495 2275 7771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7773 41.594 NaN 39726 35 0 5043.1 0.261 + 16365 LSAWFLCWHL 10 21 638.3204419905012 1274.6263310478023 2 638.8209228515625 MULTI HCD FTMS 0 0 0 7771 4680.0439453125 0.01287693828302051 26 -0.7045516967773438 2 Unmodified _LSAWFLCWHL_ REV__RTP2|p.R200H|1|0.1|ENSG00000198471|chr3:187698577-187698577|C/T|missense_variant 3.5964929083625545 0.45626689593999237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99100.5 NaN 5496 2275 7771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7774 41.597 NaN 15137 35 0 4267.4 0.261 + 32456 WDWETAWCSL 10 15 648.7686157226562 NaN 0 648.7686157226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WDWETAWCSL_ ENST00000264712.7_1_2:26151240-26151528:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84261.1 NaN 5497 2275 7771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7776 41.602 NaN 1512900 35 0 171100 0.327 + 13981 KYSLIKGNF 9 105 535.3053760675239 1068.5961992018476 2 535.3050537109375 MULTI HCD FTMS 0 0 0 7775 947884.75 0.2276819216288635 -5 0.1282806396484375 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 203.63889746883072 1.2993995354712843E-17 1 [YK]S{I|L}{I|L}KGN{M(Oxidation (M))|F} 9 0 + 81.853 0 0 7.6599 7.6599 90.912 0 0 0 4.3501395448937785 45.257819196247496 4.3501395448937785 9.208187539523749 0 2.6560383909227108 0 0.8609243748081782 1.9551120522087029 + + [YK]S{I|L}{I|L}KGN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}KGGG{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GKN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GKGG{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GN{M(Oxidation (M))|F}K;[YK]S[KA]{I|L}VN{M(Oxidation (M))|F};[YK][KG]T{I|L}VN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GGG{M(Oxidation (M))|F}K;[YK]S{I|L}[KA]VN{M(Oxidation (M))|F};[YK][KG]T{I|L}VGG{M(Oxidation (M))|F} 7.6599;6.7982;6.5415;5.6798;5.5343;4.6802;4.6802;4.6726;4.4825;3.8185 +;-;-;-;-;-;-;-;-;- + 2079 NaN NaN 309828.8 NaN 5498 2276 7775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7777 41.607 NaN 231750 35 0 43003 0.261 + 21824 QARYEEEVL 9 42 568.7825113232672 1135.5504697133342 2 569.2726440429688 MULTI HCD FTMS 0 0 0 7775 6736.30126953125 0.05184871159121128 10 -0.2697029113769531 2 Unmodified _QARYEEEVL_ ENSG00000277586|ENST00000610854|NEFL 14.838274106304384 0.23215694253501695 1 V{I|L} 2 7 19.821 0 0 1.7455 0 0 905.3885975568375 0 905.3885975568375 0 8.851518780601921 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 1.7455 + + 24 NaN NaN 118855.9 NaN 5499 2276 7775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7778 41.61 NaN 24950 35 0 5879.3 0.261 -1 SPISSDQSLSM 11 20 584.263477493458 NaN 0 584.3027954101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _SPISSDQSLSM(Oxidation (M))_ ENSG00000125686|ENST00000300651|MED1 2.282774691075616 0.33564456907475565 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97349.3 NaN 5500 2276 7775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7779 41.614 NaN 35579 35 0 4405.3 0.261 + 28145 TIQDLESQKS 10 28 574.7918224611793 NaN 0 574.7921142578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _TIQDLESQKS_ ENSG00000168065|ENST00000301891|SLC22A11;nc|ENSG00000168065|Q9NSA0-2|SLC22A11 2.9952420565917617 0.3376207769591857 1 Y 1 10 5.4846 0 0 0.47793 0 0 182.14057744013354 799.3407076471311 981.4812850872647 0 0 0 0 0 0 0 0 0 Y 0.47793 - 2 + NaN NaN 87248.6 NaN 5501 2276 7775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7781 41.619 NaN 600240 35 0 127770 0.327 + 29384 TYQEVAQKF 9 73 557.2821582971296 1112.5497636610592 2 558.300048828125 MULTI HCD FTMS 0 0 0 7780 20505.974609375 0.7862216313299509 3 -0.078857421875 1 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 34.93206674587334 0.08860942999206235 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}TK{M(Oxidation (M))|F} 9 6 + 35.005 0 0 3.1464 3.1464 81.478 0 0 0 2.227394680651223 7.1243951142530975 2.227394680651223 5.050843388113741 0 0.7059771852360797 1.5228787452803376 0.3054621874040891 0.3252574989159953 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}TK{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[DP]{I|L}T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]{I|L}T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.1464;2.6924;2.2986 -;-;- 787 NaN NaN 186699.6 NaN 5502 2277 7780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7782 41.623 NaN 286840 35 0 20438 0.261 + 26003 SPEDGIHEL 9 64 498.7349497054158 995.4553464776316 2 498.73486328125 MULTI HCD FTMS 0 0 0 7780 85796.2421875 0.4712188378392805 -3 0.0555572509765625 2 Unmodified _SPEDGIHEL_ ENSG00000115414|ENST00000354785|FN1;ENST00000492816.6_1_2:216245477-216245942:-|nuORF;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-7|FN1 99.79894945604345 0.0042691968066200965 1 SPEDG{I|L}Y 7 3 74.747 0 0 7.5088 0 0 0 231.1131533258422 231.1131533258422 52.01622290693016 0 0 0 0 1.7302046884880937 1.5228787452803376 0.7302046884880937 0 SPEDG{I|L}Y 7.5088 - 501 + NaN NaN 123429.8 NaN 5503 2277 7780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7783 41.627 NaN 77183 35 0 7359.3 0.261 -1 CYKFPFTHCF 10 42 469.53748097805385 1405.5906135343616 3 469.5368957519531 MULTI HCD FTMS 0 0 0 7780 24680.373046875 0.580103312079384 1 -0.019603729248046875 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YKFPFTHC(Carbamidomethyl (C))F_ chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|78 1.9063754702782614 0.46521295622613185 1 {M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 4 -1 24.157 0 0 1.7186 0 0 808.3295502775019 0 808.3295502775019 0 21.682437647924218 0 0 0 0 0 0 0 {M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 1.7186 - 20 + NaN NaN 91247.5 NaN 5504 2277 7780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7784 41.63 NaN 82496 35 0 10943 0.261 + 24504 RYLEKPMEI 9 34 589.8153106192221 1177.6160683052442 2 589.8158569335938 MULTI HCD FTMS 0 0 0 7780 35182.08203125 0.07220502207466585 -8 0.1972198486328125 4 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 15.248480904072842 0.22861284681709862 1 {I|L}{M(Oxidation (M))|F}VEKE 6 6 51.631 0 0 4.3844 0 0 0 429.22467981510005 429.22467981510005 35.46720330707274 0 0 0 0 0.8494850021680094 0 0.5 0 {I|L}{M(Oxidation (M))|F}VEKE 4.3844 - 53 + NaN NaN 95873.7 NaN 5505 2277 7780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7785 41.633 NaN 29864 35 0 4142.5 0.261 + 28146 TIQDLESQKS 10 20 574.7918224611793 NaN 0 574.75927734375 PEAK HCD FTMS 0 0 0 7780 8877.736328125 0.806053361167651 1 -0.019603729248046875 5 Unmodified _TIQDLESQKS_ ENSG00000168065|ENST00000301891|SLC22A11;nc|ENSG00000168065|Q9NSA0-2|SLC22A11 2.9952420565917617 0.3376207769591857 1 T 1 9 8.9794 0 0 0.78247 0 0 132.0947116223927 911.4069307916624 1043.5016424140551 0 0 0 0 0 0 0 0.5 0 + T 0.78247 + + 3 + NaN NaN 92318.2 NaN 5506 2277 7780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7787 41.638 NaN 1575900 35 0 145010 0.327 + 21867 QAVRQDPLL 9 80 520.2979945752736 1038.5814362173471 2 520.2977294921875 MULTI HCD FTMS 0 0 0 7786 854637.25 0.18214274373104405 9 -0.2601737976074219 1 Unmodified _QAVRQDPLL_ ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17 106.94017166704063 0.003441928997083001 1 [{I|L}P]{I|L}MQDP{I|L} 8 5 70.798 0 0 6.8168 0 0 0 128.0716144390357 128.0716144390357 48.815892290894624 0 0 0 0 1.4876954943324545 1.6989700043360187 1.1307196863200843 1.8494850021680094 [{I|L}P]{I|L}MQDP{I|L} 6.8168 - 358 NaN NaN 324282.3 NaN 5507 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7788 41.643 NaN 517460 35 0 113250 0.261 -1 0 85 560.8269481470084 1119.6393433608166 2 560.8264770507812 MULTI HCD FTMS 0 0 0 7786 266872.90625 0.21913088723867152 7 -0.20420074462890625 2 NaN NaN 1 [YV]{NN|[MP]|[D{I|L}]|[EV]}RVRS 8 -1 37.567 0 0 3.3553 0 0 0 128.07489144939703 128.07489144939703 16.59820439583026 0 0 0 0 1.3807196863200843 2 0.5 0.3054621874040891 [YV]{NN|[MP]|[D{I|L}]|[EV]}RVRS 3.3553 - 494 NaN NaN 157989.6 NaN 5508 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7789 41.646 NaN 251040 35 0 55589 0.261 + 8558 HASIDEPLL 9 50 497.7633786683023 993.5122044034047 2 497.76318359375 MULTI HCD FTMS 0 0 0 7786 109268.5859375 0.6448120225184791 -2 0.03588104248046875 3 Unmodified _HASIDEPLL_ REV__ENST00000317613.10_1_9:116304083-116304269:+|nuORF 15.847184025352803 0.2234401846867398 1 TEP{I|L}{I|L} 5 -1 40.93 0 0 4.1197 0 0 422.2035389630875 0 422.2035389630875 0 40.929862658764264 0 0 0 0.9247425010840047 0 0 0 TEP{I|L}{I|L} 4.1197 - 49 NaN NaN 113512.4 NaN 5509 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7790 41.65 NaN 158910 35 0 24375 0.261 + 32452 WDSSNQEI 8 46 489.7113743546852 977.4081957761704 2 489.7107849121094 MULTI HCD FTMS 0 0 0 7786 47210.8984375 0.5614655200607718 -3 0.048839569091796875 4 Unmodified _WDSSNQEI_ REV__ENSG00000196235|ENST00000432763|SUPT5H;REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF;REV__nc|ENSG00000196235|O00267-2|SUPT5H 11.640296217721598 0.50814828952472 1 E{I|L} 2 -1 28.271 0 0 2.8925 0 0 717.2717610550073 0 717.2717610550073 0 21.281446971601312 0 0 0 0.3807196863200844 0 0.3494850021680094 0 E{I|L} 2.8925 + + 8 NaN NaN 120539.9 NaN 5510 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7791 41.653 NaN 142040 35 0 15557 0.261 + 14734 LHQMWLSW 8 50 550.7720866796711 1099.5296204261422 2 550.7716674804688 MULTI HCD FTMS 0 0 0 7786 29406.90625 0.2727602833368273 -4 0.07516098022460938 5 Unmodified _LHQMWLSW_ ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3 8.593279151180031 0.5292430274356741 1 {I|L}[EC]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 6 4 14.181 0 0 1.2898 0 0 350.18358396207185 0 350.18358396207185 0 5.2018122933698425 0 0 0 0.5 0 0.3494850021680094 0 {I|L}[EC]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.2898 - 151 + NaN NaN 103846 NaN 5511 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7792 41.656 NaN 84554 35 0 13409 0.261 -1 RYGSDFYSM 9 39 571.2342240409885 1140.4538951487768 2 571.2334594726562 MULTI HCD FTMS 0 0 0 7786 14148.205078125 0.49503528311918354 4 -0.12843704223632812 6 Oxidation (M) _RYGSDFYSM(Oxidation (M))_ ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 10.799506525563784 0.2670509983294061 1 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4 -1 31.67 0 0 2.777 0 0 578.2463246076187 0 578.2463246076187 0 24.680475292681265 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 2.777 + + 14 NaN NaN 98431.9 NaN 5512 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7793 41.659 NaN 27612 35 0 3893 0.261 + 34809 YREIHDTTL 9 19 574.2905849978771 1146.566617062554 2 574.7913208007812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YREIHDTTL_ REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant;REV__ENSG00000137628|ENST00000393743|DDX60 3.5964929083625545 0.32375295897743744 1 T 1 -1 5.4846 0 0 0.47835 0 0 149.10500496843355 893.3900850885374 1042.4950900569709 0 0 0 0 0 0 0 0 0 T 0.47835 + + 5 + NaN NaN 87441 NaN 5513 2278 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7795 41.664 NaN 455270 35 0 64790 0.327 + 15619 LPEEEQQRVL 10 68 620.830243297559 1239.645933661918 2 620.8296508789062 MULTI HCD FTMS 0 0 0 7794 225649.421875 0.2175872695692841 7 -0.207550048828125 1 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 143.21322497773306 3.696660766155051E-07 1 {I|L}PEEEQQRV{I|L} 10 0 + 119.26 0 0 9.6201 9.6201 92.844 0 0 0 108.45327093400881 7.754537344402905 7.754537344402905 9.164539485499262 0 3.221848749616356 1.3979400086720375 1.1549471895720984 0.6382104921644451 + + {I|L}PEEEQQRV{I|L};{I|L}PEEE[AG]QRV{I|L};{I|L}PEEEQ[AG]RV{I|L};{I|L}PEEE[AG][AG]RV{I|L};[{I|L}P]EEEQQRV{I|L};[{I|L}P]EEE[AG]QRV{I|L};[{I|L}P]EEEQ[AG]RV{I|L};[EP]{I|L}EEQQRV{I|L};[{I|L}P]EEE[AG][AG]RV{I|L};[EP]E{I|L}EQQRV{I|L} 9.6201;8.8808;8.8808;8.1444;7.9834;7.2441;7.2441;6.6552;6.2454;6.0867 +;-;-;-;+;-;-;-;-;- + 1466 + NaN NaN 157372.1 NaN 5514 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7796 41.669 NaN 107920 35 0 13539 0.261 + 11899 KFIDTTSKF 9 40 543.79515636783 1085.57575980246 2 543.794189453125 MULTI HCD FTMS 0 0 0 7794 68970.25 0.00808814130566074 79 -2.235645294189453 2 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 42.835182525472874 0.05232970119408505 1 K{M(Oxidation (M))|F}{I|L}DTT 6 3 54.162 0 0 4.9892 0 0 0 377.18186365299067 377.18186365299067 23.716459608685483 0 0 0 0 1.4247425010840047 0 0.805462187404089 0 + K{M(Oxidation (M))|F}{I|L}DTT 4.9892 + + 72 + NaN NaN 95622.3 NaN 5515 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7797 41.673 NaN 128520 35 0 23732 0.261 -1 HPDVTEAML 9 36 514.7393792307885 1027.4642055283769 2 514.73876953125 MULTI HCD FTMS 0 0 0 7794 48343.5625 0.6168636707059697 6 -0.17792892456054688 3 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 21.74664581756881 0.17247014374749275 1 EA{M(Oxidation (M))|F}{I|L} 4 -1 46.186 0 0 4.4951 0 0 549.2567005841812 0 549.2567005841812 0 41.5815315012393 0 0 0 1 0 0.4247425010840047 0 EA{M(Oxidation (M))|F}{I|L} 4.4951 + + 19 NaN NaN 93611.1 NaN 5516 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7798 41.676 NaN 119520 35 0 34033 0.261 + 10967 IYDRVTRV 8 35 511.29278260365544 1020.5710122741109 2 511.29241943359375 MULTI HCD FTMS 0 0 0 7794 35931.80859375 0.11768950525423579 9 -0.2602500915527344 4 Unmodified _IYDRVTRV_ REV__ENSG00000127329|ENST00000334414|PTPRB;REV__nc|ENSG00000127329|P23467-2|PTPRB;REV__nc|ENSG00000127329|P23467-4|PTPRB;REV__nc|ENSG00000127329|P23467|PTPRB 10.823927491677226 0.514154816617796 1 {I|L}S 2 -1 25.217 0 0 2.4708 0 0 0 817.4335447197245 817.4335447197245 16.264100213633768 0 0 0 0 0 0 0.4247425010840047 0 {I|L}S 2.4708 - 9 + NaN NaN 96614.4 NaN 5517 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7799 41.679 NaN 223200 35 0 20957 0.261 + -1 VSPGYETEMRF 11 66 458.5401212122798 1372.5985342370395 3 458.8738708496094 MULTI HCD FTMS 0 0 0 7794 64205.0390625 0.9844887154338623 2 -0.0626068115234375 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 3.5926746625661337 0.403164415885289 1 R{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.892 0 0 1051.4188085195335 0 1051.4188085195335 0 4.798187706630159 0 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.892 + + 83 + NaN NaN 116512.9 NaN 5518 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7800 41.682 NaN 36751 35 0 5332.5 0.261 -1 NYIMKIHNF 9 23 598.2995111186456 1194.584469304091 2 598.8001098632812 MULTI HCD FTMS 0 0 0 7794 36775.0390625 1 0 0 6 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 3.944395688203298 0.32111559684428237 1 [NG]A 3 -1 10.458 0 0 0.87542 0 0 0 949.4419039361936 949.4419039361936 10.45757490560675 0 0 0 0 0 0 0 0 [NG]A 0.87542 - 1 + NaN NaN 85815.9 NaN 5519 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7801 41.686 NaN 57782 35 0 6111.5 0.264 -1 CCVPSRWKAR 10 36 421.5455069329611 NaN 0 421.5755310058594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))CVPSRWKAR_ ENST00000395756.5_1_17:17715763-17715886:-|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110662.3 NaN 5520 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7802 41.689 NaN 33467 35 0 5350.3 0.261 + 20828 PHSPPQAEALT 11 25 574.2905849978771 1146.566617062554 2 574.288818359375 MULTI HCD FTMS 0 0 0 7794 10573.2880859375 0.39540228785263853 -11 0.2694129943847656 8 Unmodified _PHSPPQAEALT_ REV__ENSG00000104880|ENST00000668164|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;REV__nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18 4.189502756095605 0.4005469306127019 1 DT 2 -1 24.464 0 0 2.1337 0 0 912.451463767775 0 912.451463767775 0 24.463950151760656 0 0 0 0.5 0 0 0 DT 2.1337 - 4 NaN NaN 87636.7 NaN 5521 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7803 41.692 NaN 47045 35 0 6909.4 0.261 + 22217 QLSVDEQVLV 10 28 565.3080410422718 1128.6015291513436 2 565.3074340820312 MULTI HCD FTMS 0 0 0 7794 22832.9296875 1 0 0 9 Unmodified _QLSVDEQVLV_ REV__ENSG00000188996|ENST00000380907|HUS1B 1.3295316138638542 0.46826628246186464 1 E 1 -1 6.9897 0 0 0.61932 0 0 542.2697659438792 454.26618372135005 996.5359496652293 0 0 0 0 0 0 0 0 0 E 0.61932 + + 2 + NaN NaN 88884.1 NaN 5522 2279 7794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7805 41.697 NaN 731320 35 0 87383 0.327 -1 TIGVDFEMERF 11 88 453.87994203616904 1358.617996708707 3 453.8796081542969 MULTI HCD FTMS 0 0 0 7804 314096.8125 0.9658665456630555 2 -0.069183349609375 1 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 18.3397198061782 0.2972878317988595 1 [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 9 -1 [YR]Q + + 46.815 5.4576 1.2203 3.4458 3.4458 59.557 0 0 0 0 39.06926918935653 0 0 0 1.1989700043360187 0 0.3054621874040891 0 [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 3.4458 - 366 + NaN NaN 204417.9 NaN 5523 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7806 41.702 NaN 392780 35 0 136110 0.261 + 19270 NLPDNTAVI 9 49 478.7554341624108 NaN 0 478.75555419921875 PEAK HCD FTMS 0 0 0 7804 226621.5 0.3199308811567242 7 -0.20092010498046875 2 Unmodified _NLPDNTAVI_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 13.90604991867851 0.22786006501039813 1 V 1 -1 11.99 0 0 1.2548 0 0 131.09401130048042 722.311653540846 853.4056648413264 0 0 0 0 0 0.5 0 0 0 V 1.2548 + + 10 + NaN NaN 151197.4 NaN 5524 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7807 41.705 NaN 324200 35 0 59665 0.261 + 2311 DMHTEVTTL 9 46 531.7421757598927 1061.4697985865853 2 531.7420654296875 MULTI HCD FTMS 0 0 0 7804 149247.8125 0.24475202658775724 17 -0.4810333251953125 3 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 46.020951573049366 0.037705236580089195 1 EVTT{I|L} 5 4 51.938 0 0 4.893 0 0 500.16899306465 0 500.16899306465 0 40.70107520596089 0 0 0 1 0 0.8494850021680094 0 + EVTT{I|L} 4.893 + + 70 NaN NaN 131399.1 NaN 5525 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7808 41.709 NaN 193480 35 0 18443 0.261 + -1 VSPGYETEMRF 11 66 458.5401212122798 1372.5985342370395 3 458.8741149902344 MULTI HCD FTMS 0 0 0 7804 43077.86328125 0.6605349191378876 3 -0.08562088012695312 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 5.868138319507137 0.39318500527288264 1 R{M(Oxidation (M))|F} 2 -1 19.693 0 0 1.4347 0 0 1051.4187989848895 0 1051.4187989848895 0 -2.9833247972062793 -2.9833247972062793 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.4347 + + 106 + NaN NaN 120492 NaN 5526 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7809 41.712 NaN 69434 35 0 5600.2 0.261 -1 0 42 467.1017037293503 NaN 0 467.101318359375 PEAK HCD FTMS 0 0 0 7804 49743.9140625 0.7231234988922409 -83 2.277263641357422 5 NaN NaN 1 DAR 3 -1 12.703 0 0 1.3627 0 0 197.8696539413193 389.1314904020813 587.0011443434006 0 0 0 0 0 0 0 0 0 DAR 1.3627 - 9 + NaN NaN 96330.1 NaN 5527 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7810 41.715 NaN 71788 35 0 8776.2 0.261 + 14092 KYYAIEVSPA 10 31 570.8002987143708 1139.5860444955415 2 571.3013305664062 MULTI HCD FTMS 0 0 0 7804 12997.1015625 0.3709744118861376 4 -0.1219329833984375 6 Unmodified _KYYAIEVSPA_ tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1 5.731851221503515 0.44496410492002586 1 KY 2 8 22.959 0 0 2.0147 0 0 0 845.4053623742175 845.4053623742175 13.494850021680094 0 0 0 0 0.5 0 0 0 + KY 2.0147 + + 15 + NaN NaN 89040.7 NaN 5528 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7811 41.719 NaN 41427 35 0 4660.4 0.261 -1 VQRCMALAQ 9 24 546.7694608963698 1091.5243688595394 2 547.8029174804688 MULTI HCD FTMS 0 0 0 7804 5299.93115234375 0.40345491753495 -4 0.09513473510742188 7 Carbamidomethyl (C),Oxidation (M) _VQRC(Carbamidomethyl (C))M(Oxidation (M))ALAQ_ ENSG00000123136|ENST00000242776|DDX39A;ENST00000587730.5_1_19:14520346-14520718:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF 1.844237919475145 0.33703635659052655 1 H 1 -1 6.9897 0 0 0.64036 0 0 126.02615216207694 825.3938082330686 951.4199603951456 0 0 0 0 0 0 0 0 0 H 0.64036 - 2 + NaN NaN 85924.4 NaN 5529 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7812 41.722 NaN 31908 35 0 6367.6 0.261 + 23207 RFMHYYTR 8 20 587.2856190254215 NaN 0 587.2163696289062 PEAK HCD FTMS 0 0 0 7804 5823.21044921875 1 0 0 8 Unmodified _RFMHYYTR_ ENSG00000001629|ENST00000265742|ANKIB1;ENST00000422095.1_3_7:92000906-92025787:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95439.3 NaN 5530 2280 7804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7814 41.727 NaN 1093400 35 0 203990 0.327 + 2382 DPGRDYEL 8 83 482.72206866953013 963.4295844058603 2 482.7215881347656 MULTI HCD FTMS 0 0 0 7813 697670.5 0.9260972483049759 1 -0.03955841064453125 1 Unmodified _DPGRDYEL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 43.85829265575387 0.18136530125488975 1 [DP][{M(Oxidation (M))|F}T]KDE 7 5 39.116 0 0 4.0601 0 0 0 128.0718328735417 128.0718328735417 10.487095780617032 0 0 0 0 0.805462187404089 1.6989700043360187 1.2856668758921828 0 [DP][{M(Oxidation (M))|F}T]KDE 4.0601 - 746 NaN NaN 244862.2 NaN 5531 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7815 41.732 NaN 500080 35 0 70967 0.261 + 21698 QADAPNPSL 9 47 456.72435298728465 911.4341530413693 2 456.72406005859375 MULTI HCD FTMS 0 0 0 7813 251051.171875 0.7929921266759921 -1 0.02962493896484375 2 Unmodified _QADAPNPSL_ ENSG00000105011|ENST00000263382|ASF1B 49.55428908609986 0.03219431099695407 1 [PS][NS]PNPS{I|L} 9 4 + 46.845 0 0 5.1397 5.1397 83.828 0 0 0 4.771212547196626 9.933787369250169 4.771212547196626 4.771212547196626 0 1.6237125054200234 0 0.8494850021680094 0.5 [PS][NS]PNPS{I|L};[NP]{[CA]|SS}PNPS{I|L};[NP]EQQPS{I|L};[NP][NG][DV]PS{I|L};[PS]{I|L}[SG][HD]S{I|L};[NP]E[HT]{[DS]|[MA]|[CV]|TT}{I|L} 5.1397;4.6162;3.9384;2.5919;1.8012;1.1968 -;-;-;-;-;- 98 NaN NaN 154035.4 NaN 5532 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7816 41.735 NaN 329540 35 0 24805 0.261 + 21622 PYPGAWIPF 9 73 524.2686849790467 1046.5228170248934 2 524.281982421875 MULTI HCD FTMS 0 0 0 7813 29197.357421875 0.6354054595817261 -2 0.0626068115234375 3 Unmodified _PYPGAWIPF_ ENSG00000204564|ENST00000651131|C6orf136;nc|nan|Q5SQH8|C6orf136 20.871210003555333 0.18003371494288972 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[PA]E 6 4 37.567 0 0 3.5897 0 0 0 429.22512350366213 429.22512350366213 9.875977872132324 0 0 0 0 1 2 0.6307196863200843 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[PA]E 3.5897 - 409 NaN NaN 137894.4 NaN 5533 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7817 41.738 NaN 145990 35 0 11797 0.261 + 29385 TYQEVAQKF 9 51 557.2821582971296 1112.5497636610592 2 557.2815551757812 MULTI HCD FTMS 0 0 0 7813 106723.8671875 0.7513180985501686 5 -0.1449432373046875 4 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 91.08480475639789 0.0044975408722150376 1 [YT]QEVAQK{M(Oxidation (M))|F} 9 0 + 106.75 0 0 9.595 9.595 93.508 0 0 0 5.7783248807594845 5.7783248807594845 5.7783248807594845 9.208187539523749 0 3.004432191740108 2 0 0.6861818737241735 + + [YT]QEVAQK{M(Oxidation (M))|F};[YT]QEVA[AG]K{M(Oxidation (M))|F};[YT][AG]EVAQK{M(Oxidation (M))|F};[YT][AG]EVA[AG]K{M(Oxidation (M))|F};[YT]QEVA[KG]A{M(Oxidation (M))|F};[YT][AG]EVA[KG]A{M(Oxidation (M))|F};[YT]QEV[KQ]A{M(Oxidation (M))|F};[YT][AG]EV[KQ]A{M(Oxidation (M))|F};[QA][YE]{[TV]|[{I|L}S]}QK{M(Oxidation (M))|F} 9.595;8.7673;8.7673;7.9436;6.5879;5.7642;5.3444;4.5168;2.6467 +;-;-;-;-;-;-;-;- + 236 + NaN NaN 111080.6 NaN 5534 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7818 41.742 NaN 531650 35 0 37656 0.261 + 22872 QYPEHISNI 9 76 550.7720866796711 1099.5296204261422 2 551.263427734375 MULTI HCD FTMS 0 0 0 7813 27651.23046875 0.5928521877662509 1 -0.03955841064453125 5 Unmodified _QYPEHISNI_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 47.594388314883695 0.03493607795751234 1 SQS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TN{[TV]|[{I|L}S]} 9 6 43.369 0 0 3.9443 0 0 130.1108159810238 0 130.1108159810238 0 16.199112850717935 0 0 0 0.3252574989159953 0 1 1.5044321917401078 SQS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TN{[TV]|[{I|L}S]} 3.9443 - 1246 + NaN NaN 163062.2 NaN 5535 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7819 41.745 NaN 281010 35 0 37518 0.261 + 26269 SQTQKAKFS 9 57 512.7745407841921 1023.5345286351843 2 512.7742309570312 MULTI HCD FTMS 0 0 0 7813 110675.7734375 1 0 0 6 Unmodified _SQTQKAKFS_ ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL 18.373094154950223 0.20161688160436167 1 Q{I|L}KQSG[PG] 8 8 66.024 0 0 6.4505 0 0 210.10117215248255 0 210.10117215248255 0 56.82889097984422 0 0 0 2.774227503252014 0 0.3807196863200844 0.3494850021680094 Q{I|L}KQSG[PG] 6.4505 - 216 + NaN NaN 123558.1 NaN 5536 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7820 41.748 NaN 82397 35 0 33491 0.261 -1 KEHRVRVC 8 25 542.2947959688751 1082.57503900455 2 542.294189453125 MULTI HCD FTMS 0 0 0 7813 50265.59765625 0.6562950603824426 1 -0.03955841064453125 7 Carbamidomethyl (C) _KEHRVRVC(Carbamidomethyl (C))_ ENSG00000185522|ENST00000329451|LMNTD2 4.3292370932331545 0.5355693454741696 1 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.42529 0 0 145.12327006099378 774.4160254240732 919.539295485067 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.42529 + + 1 + NaN NaN 95244.3 NaN 5537 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7821 41.752 NaN 123960 35 0 30763 0.261 + 35399 YYEEQHPEL 9 34 604.2670896750219 1206.5196264168437 2 604.2667236328125 MULTI HCD FTMS 0 0 0 7813 80644.8046875 0.03504878285097951 32 -0.9134521484375 8 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 47.7319792270244 0.034743597693959835 1 YYEEQH 6 3 80.667 0 0 6.6859 0 0 0 354.1667574518188 354.1667574518188 78.44843468456581 0 0 0 0 2.1549471895720984 2 0.4247425010840047 0 + YYEEQH 6.6859 + + 54 + NaN NaN 96224.4 NaN 5538 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7822 41.755 NaN 422910 35 0 111960 0.261 + 5311 FFKKNFFW 8 37 582.3055292452805 1162.5965055573608 2 582.3051147460938 MULTI HCD FTMS 0 0 0 7813 95432.46875 0.23811476457987915 -4 0.10848236083984375 9 Unmodified _FFKKNFFW_ REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF 2.577480529830294 0.5381683276125971 1 T{I|L} 2 -1 10.969 0 0 0.9435 0 0 496.1896480852553 449.25165735416255 945.4413054394179 0 0 0 0 0 0 0 0 0 T{I|L} 0.9435 - 57 + NaN NaN 142538.1 NaN 5539 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7823 41.758 NaN 126710 35 0 14038 0.262 + 30849 VQNGKQEAL 9 34 493.7666021287819 985.5186513243639 2 493.7662658691406 MULTI HCD FTMS 0 0 0 7813 71186.4140625 0.9359589683791628 -1 0.02962493896484375 10 Unmodified _VQNGKQEAL_ REV__ENST00000343823.10_2_8:37986318-37986411:+|nuORF 26.88365393820708 0.12808753336095696 1 A{I|L} 2 -1 24.464 0 0 2.4823 0 0 783.3863388734432 0 783.3863388734432 0 13.494850021680094 0 0 0 0.5 0 0 0 A{I|L} 2.4823 + + 24 NaN NaN 103745.7 NaN 5540 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7824 41.762 NaN 112340 35 0 21490 0.261 -1 0 49 515.2679422473905 1028.5213315615808 2 515.2675170898438 MULTI HCD FTMS 0 0 0 7813 27421.19921875 0.11982091213886077 13 -0.37227630615234375 11 NaN NaN 1 MP 2 -1 15.573 0 0 1.5141 0 0 0 797.4007662408811 797.4007662408811 1.593793813122062 0 0 0 0 0 0 0 0 MP 1.5141 - 33 + NaN NaN 97432.9 NaN 5541 2281 7813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7826 41.767 NaN 3630500 35 0 431450 0.327 + 13982 KYSLIKGNF 9 118 535.3053760675239 1068.5961992018476 2 535.3054809570312 MULTI HCD FTMS 0 0 0 7825 3147964.75 0.7561411484887006 1 -0.016437530517578125 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 218.19851028895775 7.751100994510294E-24 1 KYS{I|L}{I|L}KGN 8 1 87.171 0 0 8.1576 0 0 0 162.0559023492797 162.0559023492797 66.57101601101408 0 0 0 0 2.7302046884880937 0 0.5994850021680094 1.9698565171985376 + KYS{I|L}{I|L}KGN 8.1576 + + 3393 + NaN NaN 531667.9 NaN 5542 2282 7825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7827 41.771 NaN 743690 35 0 154840 0.261 -1 HPFFKDMSL 9 49 569.2733363548385 1136.532119776477 2 569.27294921875 MULTI HCD FTMS 0 0 0 7825 312286.34375 1 0 0 2 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 38.175570920033316 0.07371992880350783 1 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 35.433 0 0 3.1176 0 0 0 605.2630709283811 605.2630709283811 -1.76554474077804 0 -1.76554474077804 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1176 + + 579 + NaN NaN 185238.3 NaN 5543 2282 7825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7828 41.775 NaN 132930 35 0 18732 0.264 + 25007 RYVRKFVLM 9 50 404.573902147879 1210.699877043837 3 404.5741271972656 MULTI HCD FTMS 0 0 0 7825 24517.48828125 0.658431823968265 -3 0.10216522216796875 3 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.3292370932331545 0.3181982124262546 1 A{I|L}[YK]M 5 7 24.208 0 0 1.9995 0 0 586.368042182312 0 586.368042182312 0 8.723637474483468 0 0 0 0.5 0 0 0 A{I|L}[YK]M 1.9995 - 12 + NaN NaN 101787.1 NaN 5544 2282 7825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7829 41.778 NaN 61755 35 0 8541.5 0.261 + 3568 EIYGGSDSRF 10 28 565.7587386141233 1129.5029242950466 2 565.7593383789062 MULTI HCD FTMS 0 0 0 7825 26309.537109375 0.948078215126225 -1 0.03955841064453125 4 Unmodified _EIYGGSDSRF_ ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1 7.101721422024254 0.4377131641736035 1 {[QN]|[E{I|L}]|[KN]}YG 4 6 16.198 0 0 1.4341 0 0 0 664.2690523736936 664.2690523736936 3.098943791441968 0 0 0 0 0 0 0 0 + {[QN]|[E{I|L}]|[KN]}YG 1.4341 + + 4 + NaN NaN 92445.1 NaN 5545 2282 7825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7831 41.783 NaN 762740 35 0 94047 0.327 + 24505 RYLEKPMEI 9 86 589.8153106192221 1177.6160683052442 2 589.8148803710938 MULTI HCD FTMS 0 0 0 7830 439055.3125 0.9010836397602322 -2 0.055995941162109375 1 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 103.82355648334675 0.003950725192926219 1 [YR]{I|L}EKPME{I|L} 9 0 + 81.129 0 0 6.8893 6.8893 86.16 0 0 0 0.8761164391189737 51.47583320253139 0.8761164391189737 3.1430175122012685 0 1.6989700043360187 0 1.0501648626366045 0.805462187404089 + + [YR]{I|L}EKPME{I|L};[YR]{I|L}EKEMP{I|L};[VP][HV]EKPME{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KPME{I|L};[VP][HV]EKEMP{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KEMP{I|L};[YR]{I|L}T[VG]PME{I|L};[VP]E[HV]KPME{I|L};[YR]{I|L}T[VG]EMP{I|L};[VP]E[HV]KEMP{I|L} 6.8893;6.6224;5.5284;5.5115;5.2615;5.2446;4.5103;4.3825;4.2434;4.1156 +;-;-;-;-;-;-;-;-;- + 2672 NaN NaN 197336.9 NaN 5546 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7832 41.788 NaN 259930 35 0 47802 0.261 -1 0 61 560.8269481470084 1119.6393433608166 2 560.8265380859375 MULTI HCD FTMS 0 0 0 7830 93512.703125 0.07678382152690984 12 -0.3326911926269531 2 NaN NaN 1 [YV]M[RP]VRS 8 -1 38.918 0 0 3.476 0 0 0 128.07256912594156 128.07256912594156 20.334778045573074 0 0 0 0 0.7614393726401688 2 0 0.3054621874040891 [YV]M[RP]VRS 3.476 - 253 NaN NaN 139765.8 NaN 5547 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7833 41.791 NaN 132890 35 0 28332 0.261 + 22568 QSPDPAGPLL 10 33 497.7633786683023 993.5122044034047 2 497.76300048828125 MULTI HCD FTMS 0 0 0 7830 91311.8671875 0.5388464512095776 3 -0.08894729614257812 3 Unmodified _QSPDPAGPLL_ REV__ENSG00000187634|ENST00000616016|SAMD11;REV__nc|ENSG00000187634|Q96NU1-1|SAMD11;REV__nc|ENSG00000187634|Q96NU1-2|SAMD11;REV__nc|ENSG00000187634|Q96NU1-4|SAMD11;REV__nc|ENSG00000187634|Q96NU1-5|SAMD11;REV__nc|ENSG00000187634|Q96NU1-6|SAMD11;REV__nc|ENSG00000187634|Q96NU1|SAMD11 8.155526934196011 0.43213520406898465 1 P{I|L}{I|L} 3 -1 31.198 0 0 3.1402 0 0 652.2821992004768 0 652.2821992004768 0 18.979400086720375 0 0 0 0.5 0 0 0 P{I|L}{I|L} 3.1402 + + 17 NaN NaN 101071.6 NaN 5548 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7834 41.794 NaN 288650 35 0 25829 0.261 + 25670 SHVENDLSF 9 76 524.2406528245141 1046.466752715828 2 524.2401123046875 MULTI HCD FTMS 0 0 0 7830 64301.5703125 0.7879033030840763 1 -0.036312103271484375 4 Unmodified _SHVENDLSF_ REV__ENSG00000101144|ENST00000395863|BMP7 22.736283301280096 0.1639198954644489 1 YPKE{[VA]|[{I|L}G]}P{M(Oxidation (M))|F} 8 -1 38.677 0 0 3.696 0 0 96.97671472930308 0 96.97671472930308 0 18.716459608685483 0 0 0 0.3807196863200844 0 0 0 YPKE{[VA]|[{I|L}G]}P{M(Oxidation (M))|F} 3.696 - 374 + NaN NaN 120188.7 NaN 5549 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7835 41.798 NaN 142300 35 0 23295 0.261 + 17705 MAVIDGNVM 9 48 491.2224895826728 980.4304262321456 2 491.22198486328125 MULTI HCD FTMS 0 0 0 7830 89323.5078125 1 0 0 5 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 74.92900055777586 0.007493270374442853 1 {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F} 9 0 + 65.41 0 0 6.6716 6.6716 84.352 0 0 0 0.2422750325201406 0.2422750325201406 0.2422750325201406 0.2422750325201406 0 2.3252574989159953 0 0.3807196863200844 0.4247425010840047 + + {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F};MSV{I|L}D[NG]V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}V{[MG]|[TS]}[NP]V{M(Oxidation (M))|F} 6.6716;6.6468;3.8185 +;-;- + 131 NaN NaN 108347.2 NaN 5550 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7836 41.801 NaN 196130 35 0 36018 0.261 + 18825 NADPQAVTM 9 52 473.718596770653 945.422640608106 2 473.7198486328125 MULTI HCD FTMS 0 0 0 7830 49893.84765625 0.054532717585493 -6 0.16447830200195312 6 Unmodified _NADPQAVTM_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 1 STT{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TM 7 6 51.515 0 0 5.4489 0 0 131.0898678530029 0 131.0898678530029 0 34.06759162565898 0 0 0 1.774227503252014 0 0.3807196863200844 0 STT{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TM 5.4489 - 289 + NaN NaN 123513.4 NaN 5551 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7837 41.804 NaN 121180 35 0 13588 0.261 + 15142 LMREQSESL 9 34 546.7694608963698 1091.5243688595394 2 546.7685546875 MULTI HCD FTMS 0 0 0 7830 42032.75 1 0 0 7 Unmodified _LMREQSESL_ ENSG00000214338|ENST00000525778|SOGA3 16.149105407346934 0.22083165093524068 1 TS{I|L} 3 7 33.188 0 0 3.0405 0 0 772.349638710764 0 772.349638710764 0 15.228787452803374 0 0 0 0.5 0 0.5 0 TS{I|L} 3.0405 - 17 NaN NaN 106985.9 NaN 5552 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7838 41.808 NaN 123550 35 0 13638 0.263 + 25008 RYVRKFVLM 9 51 404.573902147879 1210.699877043837 3 404.57354736328125 MULTI HCD FTMS 0 0 0 7830 24698.34375 0.6632888058416802 -2 0.055995941162109375 8 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 7.289230182591677 0.29575926068275815 1 {I|L}M 2 7 25.217 0 0 2.0828 0 0 948.5639361967134 0 948.5639361967134 0 9.731975075880328 0 0 0 0.4247425010840047 0 0 0 + {I|L}M 2.0828 + + 16 NaN NaN 96747 NaN 5553 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7839 41.811 NaN 68941 35 0 9019 0.261 -1 YPESESIMM 9 25 559.7230933114936 1117.431633689787 2 559.7213745117188 MULTI HCD FTMS 0 0 0 7830 26250.013671875 0.1546722859631291 -16 0.4144287109375 9 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.11819662193267319 1 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}[RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 30.986 0 0 2.773 0 0 165.04565627265782 0 165.04565627265782 0 23.996294548824366 0 0 0 0.5 0 0.8494850021680094 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}[RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.773 - 26 NaN NaN 91826.4 NaN 5554 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7840 41.814 NaN 54380 35 0 10702 0.263 + 16554 LTTTNVVK 8 35 438.26330126687986 874.5120496005597 2 438.2625732421875 MULTI HCD FTMS 0 0 0 7830 17561.271484375 0.39870464251136223 -2 0.055995941162109375 10 Unmodified _LTTTNVVK_ REV__ENSG00000076356|ENST00000367033|PLXNA2 2.302733041254933 0.5385759549224092 1 M 1 -1 0.48455 0 0 0.055408 0 0 457.32193837184724 283.1166170709594 740.4385554428067 0 0 0 0 0 0 0 0 0 M 0.055408 - 1 + NaN NaN 106311.1 NaN 5555 2283 7830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7842 41.819 NaN 86220 35 0 12136 0.327 + 11900 KFIDTTSKF 9 29 543.79515636783 1085.57575980246 2 543.7943115234375 MULTI HCD FTMS 0 0 0 7841 83912.2578125 0.009840390580932131 84 -2.37744140625 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 28.233623360808718 0.11935903763491834 1 K{M(Oxidation (M))|F}{I|L}DG 5 5 53.443 0 0 4.923 0 0 0 522.2501925104124 522.2501925104124 22.998037644757048 0 0 0 0 1.5 0 0.5 0 K{M(Oxidation (M))|F}{I|L}DG 4.923 - 70 + NaN NaN 100384.3 NaN 5556 2284 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7843 41.824 NaN 108050 35 0 15078 0.261 + 15620 LPEEEQQRVL 10 32 620.830243297559 1239.645933661918 2 620.8297729492188 MULTI HCD FTMS 0 0 0 7841 73965.734375 0.07132303752702973 12 -0.32939910888671875 2 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 22.774965066868997 0.29808267786580567 1 {I|L}PEEEQQ 7 3 50.693 0 0 4.0893 0 0 0 383.24079309635005 383.24079309635005 39.72434491421879 0 0 0 0 0.4247425010840047 0 0.5 0 + {I|L}PEEEQQ 4.0893 + + 42 + NaN NaN 87466.1 NaN 5557 2284 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7844 41.827 NaN 60026 35 0 12006 0.263 + -1 GNKDECDI 8 30 475.6970073094858 NaN 0 475.6968688964844 PEAK HCD FTMS 0 0 0 7841 16343.875 0.6749948194059849 1 -0.023014068603515625 3 Carbamidomethyl (C) _GNKDEC(Carbamidomethyl (C))DI_ REV__ENSG00000206560|ENST00000683139|ANKRD28;REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF;REV__nc|ENSG00000206560|O15084-1|ANKRD28;REV__nc|ENSG00000206560|O15084-2|ANKRD28;REV__nc|ENSG00000206560|O15084|ANKRD28 2.577480529830294 0.38822285293237185 1 V 1 -1 5.4846 0 0 0.5777 0 0 253.05476793752786 594.2356661432249 847.2904340807527 0 0 0 0 0 0 0 0 0 V 0.5777 - 1 + NaN NaN 99870 NaN 5558 2284 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7845 41.831 NaN 35326 35 0 6111.3 0.261 -1 HLMWFERL 8 22 574.2905849978771 1146.566617062554 2 574.2907104492188 MULTI HCD FTMS 0 0 0 7841 26389.6640625 0.9868768789013714 -6 0.18118667602539062 4 Oxidation (M) _HLM(Oxidation (M))WFERL_ DHCR24-PCNXL2|1|fusion;ENSG00000135749|ENST00000258229|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENST00000486012.5_1_1:233231420-233297095:-|nuORF;ENST00000520463.1_1_1:233261754-233296164:-|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2 4.3292370932331545 0.5355693454741696 1 T 1 -1 6.9897 0 0 0.60962 0 0 149.1053876914428 893.3902367175657 1042.4956244090085 0 0 0 0 0 0 0 0 0 T 0.60962 - 1 + NaN NaN 102503.7 NaN 5559 2284 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7846 41.834 NaN 26693 35 0 5958.9 0.261 + -1 CIIFCMDMM 9 17 626.7302343465768 1251.4459157599536 2 626.7291259765625 MULTI HCD FTMS 0 0 0 7841 18931.92578125 0.7677227388082316 -1 0.036312103271484375 5 2 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))IIFC(Carbamidomethyl (C))M(Oxidation (M))DMM(Oxidation (M))_ REV__ENSG00000174429|ENST00000311955|ABRA 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86405.9 NaN 5560 2284 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7847 41.837 NaN 36892 35 0 4243.5 0.261 + 19092 NFDGFWFVE 9 28 580.7562734377539 NaN 0 580.7562255859375 PEAK HCD FTMS 0 0 0 7841 16218.8232421875 1 0 0 6 Unmodified _NFDGFWFVE_ REV__ENSG00000148384|ENST00000371712|INPP5E;REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E 2.0597508629832335 0.2852655770354268 1 E 1 -1 5.4846 0 0 0.47301 0 0 598.2009491198452 429.2234285943969 1027.4243777142422 0 0 0 0 0 0 0 0 0 E 0.47301 + + 2 + NaN NaN 95637.7 NaN 5561 2284 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7849 41.842 NaN 530990 35 0 68820 0.327 -1 TIGVDFEMERF 11 80 453.87994203616904 1358.617996708707 3 453.8797302246094 MULTI HCD FTMS 0 0 0 7848 231280.1875 0.7112004544169922 7 -0.20096206665039062 1 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 20.871137199558856 0.2752315090543355 1 CQW[{M(Oxidation (M))|F}T][PS]{M(Oxidation (M))|F} 8 -1 28.747 0 0 2.1159 0 0 344.22415435065994 0 344.22415435065994 0 19.108302561451055 0 0 0 1.2302046884880937 0 0.25 0 CQW[{M(Oxidation (M))|F}T][PS]{M(Oxidation (M))|F} 2.1159 - 120 + NaN NaN 157412.2 NaN 5562 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7850 41.847 NaN 172670 35 0 57856 0.261 + 19271 NLPDNTAVI 9 33 478.7554341624108 NaN 0 478.7553405761719 PEAK HCD FTMS 0 0 0 7848 78647.53125 0.11102995070464851 12 -0.3360862731933594 2 Unmodified _NLPDNTAVI_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 9.38312468134398 0.24977752951804 1 V 1 -1 11.99 0 0 1.2548 0 0 131.09430530949925 722.3121986413171 853.4065039508164 0 0 0 0 0 0.5 0 0 0 V 1.2548 + + 5 + NaN NaN 105948.7 NaN 5563 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7851 41.85 NaN 199290 35 0 37683 0.261 -1 DMHTEVTTL 9 35 531.7421757598927 1061.4697985865853 2 531.7420043945312 MULTI HCD FTMS 0 0 0 7848 94658.0078125 0.1552300087806589 22 -0.6298408508300781 3 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 32.30548876998284 0.10066689432505688 1 VTT{I|L} 4 -1 48.928 0 0 4.6094 0 0 629.2108631818375 0 629.2108631818375 0 37.69077524932108 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.6094 + + 46 NaN NaN 111999.2 NaN 5564 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7852 41.854 NaN 131000 35 0 21657 0.261 + 7169 FSICLLSTF 9 44 515.7672344289145 NaN 0 515.7542114257812 PEAK HCD FTMS 0 0 0 7848 4839.96533203125 1 0 0 4 Unmodified _FSICLLSTF_ REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF 7.910154910731844 0.25691533546754686 1 CVK 3 -1 9.2968 0 0 0.90303 0 0 234.12550653944942 462.2025545709594 696.3280611104088 0 0 0 0 0 0 0 0 0 CVK 0.90303 - 51 + NaN NaN 98559.5 NaN 5565 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7853 41.857 NaN 314730 35 0 45693 0.261 + 34975 YSRTGSSVL 9 51 485.25353667655173 968.4925204199035 2 485.252685546875 MULTI HCD FTMS 0 0 0 7848 89771.1171875 0.27627025088516477 -4 0.11532211303710938 5 Unmodified _YSRTGSSVL_ REV__chr6:7310029-7329849|305|10.78|0.03|8.29|-|1|SSR1,CAGE1|3;REV__ENST00000489567.5_1_6:7310225-7313369:-|nuORF 19.256988751693697 0.19398022840297344 1 AV{I|L} 3 -1 31.198 0 0 3.2213 0 0 667.2993031232437 0 667.2993031232437 0 26.593793813122062 0 0 0 0.5 0 0 0 AV{I|L} 3.2213 - 37 NaN NaN 133127.3 NaN 5566 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7854 41.86 NaN 106020 35 0 14334 0.261 + 972 AYFKRYQVKF 10 43 450.5832288773022 1348.7278572321065 3 450.5829162597656 MULTI HCD FTMS 0 0 0 7848 31300.287109375 0.7407582181733333 1 -0.029621124267578125 6 Unmodified _AYFKRYQVKF_ ENSG00000122406|ENST00000370321|RPL5 8.97624648632007 0.42715123575657504 1 {M(Oxidation (M))|F}SE 3 9 30.445 0 0 2.2573 0 0 967.5624475746088 0 967.5624475746088 0 11.465912507003608 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}SE 2.2573 - 7 NaN NaN 92673.5 NaN 5567 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7855 41.864 NaN 81537 35 0 8570.4 0.261 + 19011 NAVEQDYRL 9 40 554.2746780798548 1106.5348032265094 2 554.2740478515625 MULTI HCD FTMS 0 0 0 7848 37903.640625 0.7970397757949528 2 -0.055973052978515625 7 Unmodified _NAVEQDYRL_ ENSG00000182580|ENST00000330394|EPHB3 34.221707139014875 0.09187037853496335 1 NAVEQDYR{I|L} 9 0 + 54.932 0 0 4.9643 4.9643 86.207 0 0 0 33.9625938194564 9.889917747712644 9.889917747712644 9.208187539523749 0 1.6861818737241734 0 0 0.4247425010840047 + + NAVEQDYR{I|L};NAVE[AG]DYR{I|L} 4.9643;4.1321 +;- + 62 + NaN NaN 89635.8 NaN 5568 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7856 41.867 NaN 43472 35 0 10385 0.261 + 17984 MLAVFKWDW 9 21 598.2997335136332 NaN 0 598.3132934570312 PEAK HCD FTMS 0 0 0 7848 9314.8876953125 0.7473280234620906 -5 0.14494705200195312 8 Unmodified _MLAVFKWDW_ ENST00000308488.10_1_11:77374192-77374351:-|nuORF 2.0597508629832335 0.2852655770354268 1 S 1 9 4.6041 0 0 0.38541 0 0 690.3580597012914 414.16205774478755 1104.520117446079 0 0 0 0 0 0 0 0 0 S 0.38541 - 2 + NaN NaN 82275.3 NaN 5569 2285 7848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7858 41.872 NaN 765360 35 0 155690 0.327 -1 0 51 463.21644493689695 924.4183369405939 2 463.216064453125 MULTI HCD FTMS 0 0 0 7857 451558.71875 0.7524557601777915 -3 0.08894729614257812 1 NaN NaN 1 D{I|L}S{I|L} 4 -1 44.725 0 0 4.8382 0 0 478.18040663886876 0 478.18040663886876 0 37.735097166722156 0 0 0 0.8807196863200843 0 0.8494850021680094 0 D{I|L}S{I|L} 4.8382 - 28 NaN NaN 196664.3 NaN 5570 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7859 41.877 NaN 295370 35 0 51728 0.261 + 2383 DPGRDYEL 8 64 482.72206866953013 963.4295844058603 2 482.7214660644531 MULTI HCD FTMS 0 0 0 7857 200932.28125 0.26672022503641263 6 -0.1713409423828125 2 Unmodified _DPGRDYEL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 43.77239144664712 0.1824688044483776 1 [DP]{[NV]|[RG]}YDE{I|L} 8 2 + 52.159 0 0 5.4138 5.4138 83.436 0 0 0 5.030834337684311 33.68948444925195 5.030834337684311 3.0102999566398125 0 0.6747425010840047 1.5228787452803376 0.3807196863200844 0 [DP]{[NV]|[RG]}YDE{I|L};[DP]{[NV]|[RG]}DYE{I|L};[DP]{[NV]|[RG]}YED{I|L};[DP]{[NV]|[RG]}DG[PG]{[HG]|PP};[YE]DG[RP]D{I|L};[VP][DN]DG[PG]{[HG]|PP} 5.4138;5.1014;4.581;1.2399;0.72244;0.38603 -;+;-;-;-;- + 227 NaN NaN 121094.9 NaN 5571 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7860 41.88 NaN 162280 35 0 26946 0.261 + 21699 QADAPNPSL 9 36 456.72435298728465 911.4341530413693 2 456.72406005859375 MULTI HCD FTMS 0 0 0 7857 124212.5390625 0.3923485589624739 4 -0.112030029296875 3 Unmodified _QADAPNPSL_ ENSG00000105011|ENST00000263382|ASF1B 31.26834338654808 0.10542797264966089 1 {M(Oxidation (M))|F}PN[PS]{I|L} 6 4 25.406 0 0 2.7875 0 0 238.08070571113439 0 238.08070571113439 0 19.921525057367404 0 0 0 1 0 0 0 {M(Oxidation (M))|F}PN[PS]{I|L} 2.7875 - 37 NaN NaN 111995.7 NaN 5572 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7861 41.883 NaN 830250 35 0 246570 0.261 + 18826 NADPQAVTM 9 64 473.718596770653 945.422640608106 2 473.7181396484375 MULTI HCD FTMS 0 0 0 7857 380457.96875 0.41583096789680296 -3 0.08894729614257812 4 Unmodified _NADPQAVTM_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 80.6760300276096 0.005633624786464751 1 {[QG]|[NA]}D[QP]AVTM 9 0 + 83.434 0 0 8.8251 8.8251 96.032 0 0 0 1.1928031367991423 1.1928031367991423 1.1928031367991423 22.283474859079384 0 2.774227503252014 0.958607314841775 0 1.024227503252014 + + {[QG]|[NA]}D[QP]AVTM;{[QG]|[NA]}D[QP]AMS{I|L};{[QG]|[NA]}D[QP]T{[VA]|[{I|L}G]}M;{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F}[PS];{[WN]|[YH]}YYTS{I|L};{[QG]|[NA]}[{I|L}T]{NN|[MP]|[D{I|L}]|[EV]}D{[QG]|[NA]} 8.8251;6.4681;5.8683;2.9092;2.1136;0.97289 +;-;-;-;-;- + 298 NaN NaN 219062.4 NaN 5573 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7862 41.887 NaN 275920 35 0 37388 0.261 + 3042 EAFPHDSQL 9 52 522.2431934826263 1042.4718340320526 2 522.2428588867188 MULTI HCD FTMS 0 0 0 7857 124560.7109375 0.3861192261462849 -4 0.10538482666015625 5 Unmodified _EAFPHDSQL_ ENSG00000071894|ENST00000616140|CPSF1 36.12702656103203 0.08312389501731911 1 E{I|L} 2 7 18.188 0 0 1.7447 0 0 782.3301869123062 0 782.3301869123062 0 2.095398342068094 0 0 0 0 0 0.5 0 E{I|L} 1.7447 - 49 NaN NaN 123568 NaN 5574 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7863 41.89 NaN 115110 35 0 16380 0.261 + -1 MEMMHGMT 8 38 500.1741688208829 998.3337847085659 2 500.17333984375 MULTI HCD FTMS 0 0 0 7857 35943.3359375 0.39542164054256446 -2 0.05263519287109375 6 2 Oxidation (M) _M(Oxidation (M))EM(Oxidation (M))MHGMT_ REV__ENSG00000146592|ENST00000357727|CREB5;REV__nc|ENSG00000146592|Q02930-2|CREB5;REV__nc|ENSG00000146592|Q02930-3|CREB5;REV__nc|ENSG00000146592|Q02930-4|CREB5 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 99590.3 NaN 5575 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7864 41.893 NaN 40483 35 0 10108 0.261 + 10400 INNYQRRCK 9 18 597.8129592102639 1193.6113654873277 2 597.8131713867188 MULTI HCD FTMS 0 0 0 7857 12629.763671875 0.5387227106859718 4 -0.112030029296875 7 Unmodified _INNYQRRCK_ ENSG00000169385|ENST00000304625|RNASE2 3.944395688203298 0.32111559684428237 1 K 1 8 6.9897 0 0 0.58559 0 0 504.2228900008027 558.2710054986936 1062.4938954994964 0 0 0 0 0 0.3494850021680094 0 0 0 + K 0.58559 + + 1 + NaN NaN 100751.8 NaN 5576 2286 7857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7866 41.898 NaN 524030 35 0 133780 0.327 + 5312 FFKKNFFW 8 38 582.3055292452805 1162.5965055573608 2 582.30517578125 MULTI HCD FTMS 0 0 0 7865 295749.875 0.737929268545237 2 -0.056003570556640625 1 Unmodified _FFKKNFFW_ REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF 2.577480529830294 0.5381683276125971 1 T{I|L}VV[HV] 6 -1 28.416 0 0 2.4442 0 0 496.19097835886663 0 496.19097835886663 0 23.812281309285623 0 0 0 0 0 0 0 T{I|L}VV[HV] 2.4442 - 94 + NaN NaN 164884 NaN 5577 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7867 41.903 NaN 164120 35 0 13857 0.261 + 12831 KYFDNSQSL 9 52 551.2637943197113 1100.5130357062226 2 551.2631225585938 MULTI HCD FTMS 0 0 0 7865 92840.9921875 0.4464273518580893 4 -0.12198638916015625 2 Unmodified _KYFDNSQSL_ nc|ENSG00000052841|Q96AE7-2|TTC17 32.78568957990786 0.09846250359632436 1 S{I|L} 2 7 29.776 0 0 2.7057 0 0 882.3872833801797 0 882.3872833801797 0 17.44464103855016 0 0 0 0.5 0 0.3807196863200844 0 + S{I|L} 2.7057 + + 95 NaN NaN 109309.5 NaN 5578 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7868 41.906 NaN 231050 35 0 18699 0.261 + 6844 FPSYRHQF 8 55 541.2627756201156 NaN 0 541.27587890625 PEAK HCD FTMS 0 0 0 7865 9210.4404296875 0.48526623990569107 4 -0.12198638916015625 3 Unmodified _FPSYRHQF_ REV__ENSG00000117000|ENST00000372771|RLF 14.581692164780916 0.38795613832665576 1 KMTD{M(Oxidation (M))|F}K 6 -1 12.981 0 0 1.2014 0 0 165.0517766386684 162.0560701959594 327.1078468346278 0 0 0 0 0 0.3935078169319297 0 0.3807196863200844 0 KMTD{M(Oxidation (M))|F}K 1.2014 - 80 + NaN NaN 119560 NaN 5579 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7869 41.91 NaN 89200 35 0 22713 0.261 + 35400 YYEEQHPEL 9 24 604.2670896750219 1206.5196264168437 2 604.2662963867188 MULTI HCD FTMS 0 0 0 7865 48066.86328125 0.020890187036851724 38 -1.0886726379394531 4 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 47.594388314883695 0.03493607795751234 1 YYEEQH 6 3 72.312 0 0 5.9935 0 0 0 354.1669100397094 354.1669100397094 66.82766571201022 0 0 0 0 2.079689690656103 2 0.7614393726401688 0 + YYEEQH 5.9935 + + 41 + NaN NaN 92392.7 NaN 5580 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7870 41.913 NaN 65057 35 0 5173.6 0.261 + 29386 TYQEVAQKF 9 38 557.2821582971296 1112.5497636610592 2 557.2817993164062 MULTI HCD FTMS 0 0 0 7865 38069.18359375 0.2680006580043 11 -0.31311798095703125 5 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 37.07464296494664 0.07877380486334713 1 [YT]Q{NN|[MP]|[D{I|L}]|[EV]}AQK{M(Oxidation (M))|F} 9 0 + 59.912 0 0 5.3851 5.3851 86.904 0 0 0 38.94279652582085 10.642492736872597 10.642492736872597 9.208187539523749 0 2.1549471895720984 2 0 0 + + [YT]Q{NN|[MP]|[D{I|L}]|[EV]}AQK{M(Oxidation (M))|F};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}A[AG]K{M(Oxidation (M))|F};[YT][AG]{NN|[MP]|[D{I|L}]|[EV]}AQK{M(Oxidation (M))|F};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}A[KG]A{M(Oxidation (M))|F};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}[KQ]A{M(Oxidation (M))|F} 5.3851;4.5574;4.5574;2.378;1.7703 +;-;-;-;- + 69 + NaN NaN 107589.8 NaN 5581 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7871 41.916 NaN 107360 35 0 6664.7 0.261 + 11758 KDPLHTSNL 9 46 512.7745407841921 1023.5345286351843 2 512.7742919921875 MULTI HCD FTMS 0 0 0 7865 35111.125 0.31724309584181665 6 -0.17464447021484375 6 Unmodified _KDPLHTSNL_ REV__ENSG00000140836|ENST00000268489|ZFHX3 6.723162845929126 0.3000504726104499 1 {I|L} 1 -1 11.99 0 0 1.1714 0 0 572.2923544181905 335.1357515924438 907.4281060106343 0 0 0 0 0 0.5 0 0 0 {I|L} 1.1714 + + 42 + NaN NaN 92382.6 NaN 5582 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7872 41.92 NaN 85518 35 0 7717.4 0.261 + 23596 RPFEDQTSL 9 40 546.7694608963698 1091.5243688595394 2 546.7701416015625 MULTI HCD FTMS 0 0 0 7865 34085.4453125 0.8109258926075501 4 -0.12198638916015625 7 Unmodified _RPFEDQTSL_ ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF;RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant 11.494710602746466 0.2610445893512368 1 QTS{I|L} 4 5 38.047 0 0 3.4857 0 0 644.2940540998062 0 644.2940540998062 0 27.589869102636158 0 0 0 0.4247425010840047 0 0.4247425010840047 0 + QTS{I|L} 3.4857 + + 43 NaN NaN 91841.4 NaN 5583 2287 7865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7874 41.925 NaN 1093500 35 0 131270 0.327 + 13983 KYSLIKGNF 9 104 535.3053760675239 1068.5961992018476 2 535.30517578125 MULTI HCD FTMS 0 0 0 7873 760642.125 0.1827062421796133 7 -0.19104385375976562 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 209.87028166699892 5.4766109851150774E-18 1 KYS{I|L}{I|L}K 6 3 78.102 0 0 7.3088 0 0 0 333.11994348697505 333.11994348697505 54.61401446528966 0 0 0 0 2 0 0.5941876774005248 1.7034021960761265 + KYS{I|L}{I|L}K 7.3088 + + 3041 + NaN NaN 257491.5 NaN 5584 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7875 41.929 NaN 486790 35 0 58670 0.261 + 24506 RYLEKPMEI 9 66 589.8153106192221 1177.6160683052442 2 589.81494140625 MULTI HCD FTMS 0 0 0 7873 264161.71875 0.542145365833761 3 -0.09563827514648438 2 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 84.5221896805406 0.004669506596793478 1 {I|L}{M(Oxidation (M))|F}VEKE{I|L} 7 5 80.125 0 0 6.804 0 0 0 316.14179407291255 316.14179407291255 50.47183545729396 0 0 0 0 1.6861818737241734 0 1.305462187404089 0.4247425010840047 {I|L}{M(Oxidation (M))|F}VEKE{I|L} 6.804 - 1430 + NaN NaN 162860.8 NaN 5585 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7876 41.933 NaN 516800 35 0 107170 0.261 -1 HPFFKDMSL 9 57 569.2733363548385 1136.532119776477 2 569.2728881835938 MULTI HCD FTMS 0 0 0 7873 239397.09375 0.766594820879035 6 -0.17463302612304688 3 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 26.268140514670165 0.13340543277302316 1 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 38.047 0 0 3.3477 0 0 0 605.2598971002561 605.2598971002561 18.873861789814228 0 0 0 0 0.8494850021680094 0 0 0 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3477 + + 232 + NaN NaN 178435.7 NaN 5586 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7877 41.936 NaN 245660 35 0 29834 0.261 -1 0 70 560.8269481470084 1119.6393433608166 2 560.8264770507812 MULTI HCD FTMS 0 0 0 7873 80202.4921875 0.06585473032371376 17 -0.484710693359375 4 NaN NaN 1 [YV]MQQHV 7 -1 24.569 0 0 2.1944 0 0 0 231.20282134118455 231.20282134118455 -1.3481118982146967 0 -1.3481118982146967 0 0 0 2 0 0 [YV]MQQHV 2.1944 - 279 NaN NaN 124913.4 NaN 5587 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7878 41.939 NaN 257470 35 0 21759 0.261 + -1 VCHLWASF 8 50 510.243435027048 1018.472317120896 2 510.2427062988281 MULTI HCD FTMS 0 0 0 7873 25658.185546875 0.5734134742175893 1 -0.02965545654296875 5 Carbamidomethyl (C) _VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 26.34127834903884 0.3999841173197873 1 TSAA[WD]AS{M(Oxidation (M))|F} 9 -1 47.942 0 0 4.7072 0 0 64.03312080980409 0 64.03312080980409 0 32.145096999615745 0 0 0 0 0 1.3494850021680094 0 TSAA[WD]AS{M(Oxidation (M))|F} 4.7072 - 268 + NaN NaN 135457.9 NaN 5588 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7879 41.943 NaN 108610 35 0 20588 0.261 + 2258 DLIGLKKLD 9 30 507.8130985233844 1013.6116441135688 2 507.8125915527344 MULTI HCD FTMS 0 0 0 7873 22343.39453125 0.5658886398521543 1 -0.02965545654296875 6 Unmodified _DLIGLKKLD_ REV__ENSG00000174059|ENST00000310833|CD34;REV__ENST00000485761.1_1_1:208057818-208072476:-|nuORF;REV__nc|ENSG00000174059|P28906-2|CD34 8.745405648335112 0.2847203663274469 1 D{I|L} 2 -1 41.766 0 0 4.1205 0 0 0 782.4772247390993 782.4772247390993 41.76599703664159 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 D{I|L} 4.1205 + + 5 + NaN NaN 114642.7 NaN 5589 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7880 41.946 NaN 85570 35 0 21359 0.261 + 11489 IYQRDPLKL 9 28 573.3373633510924 1144.6601737689848 2 573.3361206054688 MULTI HCD FTMS 0 0 0 7873 24757.162109375 0.25414765187545685 -3 0.0823211669921875 7 Unmodified _IYQRDPLKL_ ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant 5.731851221503515 0.3075653528928475 1 Q 1 8 3.9794 0 0 0.34765 0 0 266.22653495474475 747.3490084283811 1013.5755433831259 0 0 0 0 0 0 0 0 0 + Q 0.34765 + + 10 + NaN NaN 96024.1 NaN 5590 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7881 41.949 NaN 32846 35 0 4521.3 0.261 + -1 LKYFLYCANG 10 30 624.8069509676816 NaN 0 624.807373046875 PEAK HCD FTMS 0 0 0 7873 12183.27734375 0.4564637323633434 -4 0.10533523559570312 8 Carbamidomethyl (C) _LKYFLYC(Carbamidomethyl (C))ANG_ REV__ENST00000392341.5_1_17:80196852-80197050:+|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87776 NaN 5591 2288 7873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7883 41.954 NaN 694000 35 0 81545 0.327 + 18984 NASEDRLEL 9 93 523.7589697932202 1045.5033866532403 2 523.758544921875 MULTI HCD FTMS 0 0 0 7882 369468.78125 0.6340516319521238 -2 0.056003570556640625 1 Unmodified _NASEDRLEL_ ENSG00000175073|ENST00000310421|VCPIP1 94.90867108109511 0.004397340885530348 1 {[QG]|[NA]}SEDR{I|L}E{I|L} 9 0 + 82.792 0 0 7.9189 7.9189 94.294 0 0 0 21.021344503204972 57.99385266977414 21.021344503204972 19.59544243948811 0 2.31295299324845 1.6989700043360187 0.9247425010840047 1.0114393726401687 + + {[QG]|[NA]}SEDR{I|L}E{I|L};{[QG]|[NA]}SE[Q{I|L}]S{[QG]|[NA]}{I|L} 7.9189;6.0446 +;- + 755 NaN NaN 211077.5 NaN 5592 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7884 41.959 NaN 318420 35 0 31320 0.261 + -1 VCHLWASF 8 51 510.243435027048 1018.472317120896 2 510.23333740234375 MULTI HCD FTMS 0 0 0 7882 33123.0625 0.7402398080781124 2 -0.06598281860351562 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 34.18733598223924 0.30560024141787767 1 TS{M(Oxidation (M))|F}QPAAS{M(Oxidation (M))|F} 9 -1 52.49 0 0 5.1537 0 0 64.03361878632286 0 64.03361878632286 0 37.00495338161453 0 0 0 0.3935078169319297 0 1.6237125054200234 0 TS{M(Oxidation (M))|F}QPAAS{M(Oxidation (M))|F} 5.1537 - 643 + NaN NaN 123174.1 NaN 5593 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7885 41.962 NaN 257430 35 0 31627 0.261 -1 AIASGSCELC 10 50 505.71747836566175 1009.4204037981235 2 505.7169189453125 MULTI HCD FTMS 0 0 0 7882 46057.015625 0.9585067236376215 -1 0.02965545654296875 3 Carbamidomethyl (C) _AIASGSC(Carbamidomethyl (C))ELC_ ENST00000409716.6_2_2:73961700-73964524:-|nuORF 6.723162845929126 0.4397169348982109 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 -1 + 23.338 0 0 2.312 2.312 85.508 0 0 0 7.853350071374621 0.6694678963061307 0.6694678963061307 13.214562785677655 0 0 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.312;1.0029 -;- 46 NaN NaN 131758 NaN 5594 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7886 41.966 NaN 34820 35 0 5710.5 0.261 -1 MAVIDGNVM 9 25 491.2224895826728 980.4304262321456 2 491.22210693359375 MULTI HCD FTMS 0 0 0 7882 14800.6982421875 0.16569768255469564 6 -0.16138839721679688 4 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 13.90604991867851 0.24021115267848145 1 V{M(Oxidation (M))|F} 2 -1 27.206 0 0 2.7749 0 0 716.3151746225737 0 716.3151746225737 0 19.75895023531386 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.7749 + + 7 + NaN NaN 81088.2 NaN 5595 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7887 41.969 NaN 130590 35 0 29016 0.261 + 9062 HPEVAPDVRL 10 33 566.8093131755065 1131.604073417813 2 566.8087158203125 MULTI HCD FTMS 0 0 0 7882 43268.6328125 0.850062956001249 -3 0.08235549926757812 5 Unmodified _HPEVAPDVRL_ ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 18.373094154950223 0.33925629317698053 1 HPE{[VA]|[{I|L}G]}[DP]{I|L}[RV] 10 2 + 31.132 0 0 2.7511 2.7511 87.768 0 0 0 16.42667503568731 2.319393642848482 2.319393642848482 31.131674952134105 0 0.9247425010840047 0 0 0 HPE{[VA]|[{I|L}G]}[DP]{I|L}[RV] 2.7511 - 31 + NaN NaN 101964.6 NaN 5596 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7888 41.972 NaN 88121 35 0 13465 0.264 + 23760 RRIVVYFKM 9 40 404.573902147879 1210.699877043837 3 404.5738830566406 MULTI HCD FTMS 0 0 0 7882 21036.23046875 0.5649405615316839 4 -0.11864089965820312 6 Unmodified _RRIVVYFKM_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 2.0597508629832335 0.3354026079994024 1 M 1 -1 20.485 0 0 1.692 0 0 1061.6488801950072 0 1061.6488801950072 0 18.89075625191822 0 0 0 0.5 0 0 0 M 1.692 + + 5 + NaN NaN 90617.8 NaN 5597 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7889 41.976 NaN 144070 35 0 18259 0.261 + 22413 QPVHGDLDL 9 31 497.25352933890457 992.4925057446092 2 497.7631530761719 MULTI HCD FTMS 0 0 0 7882 25130.853515625 0.3562772482796958 -3 0.08235549926757812 7 Unmodified _QPVHGDLDL_ ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 20.453626601364224 0.18364154288633264 1 {I|L}D{I|L} 3 6 14.437 0 0 1.4546 0 0 633.2871357268342 0 633.2871357268342 0 3.4678748622465623 0 0 0 0.12371250542002349 0 0.4247425010840047 0 + {I|L}D{I|L} 1.4546 + + 30 + NaN NaN 102897.1 NaN 5598 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7890 41.979 NaN 112020 35 0 6988.8 0.261 + 34949 YSLYMLSI 8 39 495.2558431418174 988.4971333504349 2 495.255615234375 MULTI HCD FTMS 0 0 0 7882 25928.03125 0.5419895635439661 -3 0.08235549926757812 8 Unmodified _YSLYMLSI_ REV__ENST00000377191.4_1_20:21370232-21370421:+|nuORF 23.1484247019978 0.4234759064137959 1 AS{I|L} 3 -1 28.94 0 0 2.9277 0 0 699.3339100568375 0 699.3339100568375 0 23.455612550363796 0 0 0 0.4247425010840047 0 0 0 AS{I|L} 2.9277 - 29 NaN NaN 116794.3 NaN 5599 2289 7882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7892 41.984 NaN 389330 35 0 47490 0.327 + -1 MNSTRRYMRE 10 78 453.87994203616904 1358.617996708707 3 453.8796691894531 MULTI HCD FTMS 0 0 0 7891 150109.359375 0.46159528731679006 12 -0.33618927001953125 1 Oxidation (M) _M(Oxidation (M))NSTRRYMRE_ REV__ENSG00000154678|ENST00000396191|PDE1C;REV__nc|ENSG00000154678|Q14123-2|PDE1C;REV__nc|ENSG00000154678|Q14123-3|PDE1C 7.477065608646677 0.43572640772348226 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.4379652105329 0 1037.4379652105329 0 -1.063696562846701 -1.063696562846701 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 - 102 + NaN NaN 142885.2 NaN 5600 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7893 41.989 NaN 484490 35 0 69769 0.261 + 24657 RYLSPKYIKMF 11 64 487.93555228524644 1460.7848274559394 3 487.9349365234375 MULTI HCD FTMS 0 0 0 7891 185876.234375 0.543417817736974 -3 0.0856781005859375 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 45.602519287354625 0.10086807373802695 1 [Y{I|L}]RS[KP]Y{I|L}KET 11 4 66.864 0 0 4.5773 0 0 0 78.98781040413783 78.98781040413783 50.41048570511589 0 0 0 0 1.9247425010840047 1.2218487496163564 1.3494850021680094 0 [Y{I|L}]RS[KP]Y{I|L}KET 4.5773 - 160 NaN NaN 157357.7 NaN 5601 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7894 41.992 NaN 248820 35 0 31292 0.261 + 34408 YPESESIMM 9 48 559.7230933114936 1117.431633689787 2 559.72216796875 MULTI HCD FTMS 0 0 0 7891 115596.28125 0.6811250193340257 -9 0.2569732666015625 3 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 71.13359017698441 0.008721403657255008 1 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 76.191 0 0 6.8184 0 0 389.15922743965 0 389.15922743965 0 63.86623162815269 0 0 0 2.3807196863200843 0 1.274227503252014 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.8184 + + 231 NaN NaN 114336 NaN 5602 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7895 41.995 NaN 86221 35 0 9189.2 0.261 + 11901 KFIDTTSKF 9 37 543.79515636783 1085.57575980246 2 543.794677734375 MULTI HCD FTMS 0 0 0 7891 65130.8671875 0.007637896878331201 90 -2.563434600830078 4 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 35.61225514009592 0.08548698421724198 1 K{M(Oxidation (M))|F}{I|L}DG 5 5 49.821 0 0 4.5893 0 0 0 522.2595308893186 522.2595308893186 4.652959642544161 0 0 0 0 1 0 0.4247425010840047 0 K{M(Oxidation (M))|F}{I|L}DG 4.5893 - 81 + NaN NaN 106817.3 NaN 5603 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7896 41.999 NaN 192000 35 0 25783 0.261 + 34761 YQERGLEV 8 47 497.25352933890457 992.4925057446092 2 497.2528991699219 MULTI HCD FTMS 0 0 0 7891 74776.34375 0.5352828930885143 -2 0.059329986572265625 5 Unmodified _YQERGLEV_ ENST00000595406.1_1_19:22321288-22321780:+|nuORF 23.1484247019978 0.4234759064137959 1 G{I|L}{NN|[MP]|[D{I|L}]|[EV]} 4 4 19.807 0 0 1.9957 0 0 576.260463363553 0 576.260463363553 0 3.8211367387811634 0 0 0 0.3252574989159953 0 0.4247425010840047 0 + G{I|L}{NN|[MP]|[D{I|L}]|[EV]} 1.9957 + + 93 + NaN NaN 111068.8 NaN 5604 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7897 42.002 NaN 283480 35 0 35856 0.261 + 32996 YATHPFKF 8 56 505.75815712968244 1009.5017613261649 2 505.7578125 MULTI HCD FTMS 0 0 0 7891 43033.57421875 0.643473604872005 -1 0.029674530029296875 6 Unmodified _YATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 74.92900055777586 0.024005273830084817 1 YATHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 8 0 + 78.396 0 0 7.7659 7.7659 93.151 0 0 0 74.41708251878282 14.904630595263413 14.904630595263413 14.019658726648899 0 1.774227503252014 2 0 0 + + YATHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}THP{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}STHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[QA]P{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 7.7659;6.3771;6.1562;3.2872 +;+;-;- + 100 + NaN NaN 124327.4 NaN 5605 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7898 42.005 NaN 95972 35 0 10583 0.261 + 3662 ELLCMSETYER 11 44 458.5401212122798 1372.5985342370395 3 458.5395202636719 MULTI HCD FTMS 0 0 0 7891 25044.38671875 0.3398512414708052 9 -0.24718475341796875 7 Unmodified _ELLCMSETYER_ REV__ENSG00000039523|ENST00000042381|RIPOR1;REV__ENST00000569474.5_1_16:67573772-67574407:+|nuORF;REV__nc|ENSG00000039523|Q6ZS17-3|RIPOR1;REV__nc|ENSG00000039523|Q6ZS17-4|RIPOR1;REV__nc|ENSG00000039523|Q6ZS17|RIPOR1 3.5926746625661337 0.403164415885289 1 [WQ]Q{M(Oxidation (M))|F}W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 9 -1 [WQ]Q{M(Oxidation (M))|F} + + 24.961 -2.2531 -0.38236 1.8185 1.8185 58.873 0 0 0 0 19.710151048868077 0 0 0 0.4247425010840047 0 0 0 [WQ]Q{M(Oxidation (M))|F}W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 1.8185 - 58 + NaN NaN 95218 NaN 5606 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7899 42.009 NaN 52369 35 0 10172 0.261 + 15621 LPEEEQQRVL 10 23 620.830243297559 1239.645933661918 2 620.8295288085938 MULTI HCD FTMS 0 0 0 7891 29974.671875 0.028903716904399728 18 -0.5245399475097656 8 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 19.625955294349634 0.3275374527965692 1 {I|L}PE 3 7 27.435 0 0 2.2131 0 0 0 897.4456270807249 897.4456270807249 20.445312593723983 0 0 0 0 0 0 0.4247425010840047 0 + {I|L}PE 2.2131 + + 6 + NaN NaN 90003.2 NaN 5607 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7900 42.012 NaN 23878 35 0 5782 0.261 -1 VFMCVCVCMSD 11 19 626.7302343465768 1251.4459157599536 2 626.7293090820312 MULTI HCD FTMS 0 0 0 7891 15228.5439453125 0.61754412101783 5 -0.1317138671875 9 Oxidation (M) _VFM(Oxidation (M))CVCVCMSD_ ENST00000464356.6_2_1:156435368-156435647:-|nuORF 1.3295316138638542 0.4130897924953357 1 M 1 -1 5.4846 0 0 0.43826 0 0 106.77423714842855 1010.6261080377561 1117.4003451861847 0 0 0 0 0 0 0 0 0 M 0.43826 + + 1 + NaN NaN 79269.1 NaN 5608 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7901 42.015 NaN 63238 35 0 5990.8 0.261 + 15143 LMREQSESL 9 40 546.7694608963698 1091.5243688595394 2 546.7669677734375 MULTI HCD FTMS 0 0 0 7891 5802.7802734375 0.1380537859987153 7 -0.19443511962890625 10 Unmodified _LMREQSESL_ ENSG00000214338|ENST00000525778|SOGA3 5.731851221503515 0.3075653528928475 1 {I|L}[R{M(Oxidation (M))|F}] 3 6 8.9524 0 0 0.82018 0 0 657.2941880507489 0 657.2941880507489 0 0.5360498482393439 0 0 0 0 0 0 0 + {I|L}[R{M(Oxidation (M))|F}] 0.82018 + + 6 + NaN NaN 93461 NaN 5609 2290 7891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7903 42.02 NaN 716990 35 0 156490 0.327 -1 0 43 463.21644493689695 924.4183369405939 2 463.2162170410156 MULTI HCD FTMS 0 0 0 7902 500147.75 0.8334221880805219 2 -0.0526580810546875 1 NaN NaN 1 {I|L}S{I|L} 3 -1 43.5 0 0 4.7057 0 0 593.2094593732437 0 593.2094593732437 0 20.278149718869223 0 0 0 1.305462187404089 0 0.4247425010840047 0 {I|L}S{I|L} 4.7057 - 25 NaN NaN 192747 NaN 5610 2291 7902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7904 42.025 NaN 436160 35 0 69479 0.261 + 22036 QGELHSSVL 9 56 485.25353667655173 968.4925204199035 2 485.2530822753906 MULTI HCD FTMS 0 0 0 7902 195013.59375 0.6001535478142854 2 -0.0526580810546875 2 Unmodified _QGELHSSVL_ REV__ENSG00000277481|ENST00000620267|PKD1L3 26.88365393820708 0.12808753336095696 1 {[QG]|[NA]}D[HT]S{I|L}V{I|L} 9 -1 + 57.347 0 0 5.9213 5.9213 83.975 0 0 0 23.93053421393809 27.381062318217104 23.93053421393809 2.2184874961635614 0 0.5 1.6989700043360187 0.3494850021680094 0.7302046884880937 {[QG]|[NA]}D[HT]S{I|L}V{I|L};{[QG]|[NA]}[HS]ES{I|L}V{I|L};{[QG]|[NA]}A[NP]{[CP]|[EA]}AV{I|L};QQ[NP]{[CP]|[EA]}AV{I|L} 5.9213;5.6922;4.8415;2.4082 -;-;-;- 259 NaN NaN 154076.1 NaN 5611 2291 7902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7905 42.028 NaN 137850 35 0 28420 0.261 -1 DMHTEVTTL 9 33 531.7421757598927 1061.4697985865853 2 531.7418212890625 MULTI HCD FTMS 0 0 0 7902 69132.7421875 0.11337103352157718 28 -0.7951850891113281 3 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 25.399314129420986 0.14091189997036632 1 VTT{I|L} 4 -1 48.928 0 0 4.6094 0 0 629.2104359357437 0 629.2104359357437 0 37.69077524932108 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.6094 + + 30 NaN NaN 102150.6 NaN 5612 2291 7902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7906 42.032 NaN 111240 35 0 28339 0.261 + 10398 INHMLCLI 8 29 478.7554341624108 NaN 0 478.7554016113281 PEAK HCD FTMS 0 0 0 7902 40517.3125 0.057199954506643697 18 -0.507965087890625 4 Unmodified _INHMLCLI_ REV__ENST00000570086.5_1_16:81009992-81030554:-|nuORF 10.183394434864962 0.38822285293237185 1 V 1 -1 11.99 0 0 1.2548 0 0 131.0941295484186 722.3133625349833 853.4074920834018 0 0 0 0 0 0.5 0 0 0 V 1.2548 - 3 + NaN NaN 98229.2 NaN 5613 2291 7902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7907 42.035 NaN 166560 35 0 19606 0.261 + 21664 PYTKVEESF 9 49 550.2690284698276 1098.5235040064551 2 550.770751953125 MULTI HCD FTMS 0 0 0 7902 55711.74609375 0.7224269119417837 -2 0.06598281860351562 5 Unmodified _PYTKVEESF_ ENSG00000182858|ENST00000330817|ALG12 67.83816525789305 0.009787749748478139 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD[K{I|L}]ES{M(Oxidation (M))|F} 9 3 + 68.069 0 0 6.1964 6.1964 92.159 0 0 0 7.706896739454621 28.388174651779963 7.706896739454621 29.969617958179235 0 1.774227503252014 2 0.75 0.3494850021680094 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD[K{I|L}]ES{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{I|L}C(Carbamidomethyl (C))CYP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{I|L}[CG]CYP 6.1964;3.4682;2.63 -;-;- 111 NaN NaN 115678 NaN 5614 2291 7902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7908 42.038 NaN 56283 35 0 6298.1 0.261 -1 LCNCCLVC 8 44 492.6920939036718 983.3696348741436 2 492.6918029785156 MULTI HCD FTMS 0 0 0 7902 12621.466796875 0.4678458175769445 1 -0.02300262451171875 6 2 Carbamidomethyl (C) _LCNC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVC_ ENSG00000170801|ENST00000307358|HTRA3;nc|ENSG00000170801|P83110-2|HTRA3 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89063.4 NaN 5615 2291 7902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7910 42.043 NaN 753540 35 0 218540 0.327 + 18827 NADPQAVTM 9 70 473.718596770653 945.422640608106 2 473.7182312011719 MULTI HCD FTMS 0 0 0 7909 430473.96875 0.470497194914361 3 -0.0724029541015625 1 Unmodified _NADPQAVTM_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 86.33184430468982 0.004622086694044132 1 {[QG]|[NA]}D[QP]AVTM 9 0 + 79.913 0 0 8.4526 8.4526 96.407 0 0 0 19.13734275855269 65.44194980875676 19.13734275855269 35.638181262758266 0 2.4247425010840047 1 0 0.9802046884880937 + + {[QG]|[NA]}D[QP]AVTM;{[QG]|[NA]}D[QP]AMS{I|L};[MT]V[HK]{[CP]|[EA]}M;{[WN]|[YH]}YYTS{I|L};{[TV]|[{I|L}S]}M[HK]{[CP]|[EA]}M;[MT]VA[QP]D{[QG]|[NA]} 8.4526;4.6831;1.4707;1.116;0.99306;0.32779 +;-;-;-;-;- + 218 NaN NaN 203195.4 NaN 5616 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7911 42.048 NaN 798450 35 0 65608 0.261 + 912 AYATHPFKF 9 74 541.2768411675763 1080.5391294019526 2 541.2764282226562 MULTI HCD FTMS 0 0 0 7909 506355.46875 0.929341777646346 1 -0.02965545654296875 2 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 134.295615338601 0.00034446139420701925 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 93.783 0 0 8.6793 8.6793 95.387 0 0 0 18.75569708000178 16.478174818886373 16.478174818886373 18.75569708000178 0 2.6549471895720984 2 1.642159058960253 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F};AYA{[{M(Oxidation (M))|F}H]|[RQ]}[TP]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[YG][YV]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]H[YV]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]A[YV]K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}SA{[{M(Oxidation (M))|F}H]|[RQ]}[TP]K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]AYA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][VS]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]H[YV]K{M(Oxidation (M))|F} 8.6793;6.9435;6.361;5.8049;5.321;5.139;4.9244;4.8718;4.7218;4.4167 +;-;-;-;-;-;-;-;-;- + 947 NaN NaN 209355.1 NaN 5617 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7912 42.051 NaN 98624 35 0 12857 0.261 + 33048 YDDDIDDE 8 32 500.1741688208829 998.3337847085659 2 500.1737060546875 MULTI HCD FTMS 0 0 0 7909 52159.21875 0.5738166285791344 4 -0.1054229736328125 3 Unmodified _YDDDIDDE_ ENSG00000107341|ENST00000263228|UBE2R2 0.7936320650641473 0.540814922690045 1 Q 1 8 5.4846 0 0 0.54937 0 0 104.99566801357294 762.2387757459383 867.2344437595112 0 0 0 0 0 0 0 0 0 Q 0.54937 - 9 + NaN NaN 104574.8 NaN 5618 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7913 42.055 NaN 125690 35 0 15823 0.261 + 6825 FPSQGNSDL 9 47 482.72206866953013 963.4295844058603 2 482.7218322753906 MULTI HCD FTMS 0 0 0 7909 51909.6328125 0.0689055479745495 12 -0.33965301513671875 4 Unmodified _FPSQGNSDL_ REV__ENSG00000198483|ENST00000355594|ANKRD35;REV__nc|ENSG00000198483|Q8N283-2|ANKRD35 6.723162845929126 0.3000504726104499 1 E{I|L} 2 -1 19.464 0 0 2.0203 0 0 703.2934751368509 0 703.2934751368509 0 14.859856381998782 0 0 0 0 0 0 0 E{I|L} 2.0203 - 24 NaN NaN 106306.9 NaN 5619 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7914 42.058 NaN 78004 35 0 18516 0.261 + 5313 FFKKNFFW 8 24 582.3055292452805 1162.5965055573608 2 582.3050537109375 MULTI HCD FTMS 0 0 0 7909 33037.00390625 0.08243104795045206 7 -0.18787384033203125 5 Unmodified _FFKKNFFW_ REV__ENST00000463783.1_1_3:196665854-196666076:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90624.5 NaN 5620 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7915 42.061 NaN 71402 35 0 16271 0.261 + 35401 YYEEQHPEL 9 33 604.2670896750219 1206.5196264168437 2 604.2664794921875 MULTI HCD FTMS 0 0 0 7909 58702.20703125 0.025512380060738478 43 -1.2375068664550781 6 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 38.61474834105838 0.07170385841135779 1 YYEEQH 6 3 75.878 0 0 6.289 0 0 0 354.1670321100219 354.1670321100219 75.8783628755652 0 0 0 0 1.6237125054200234 2 0 0 + YYEEQH 6.289 + + 32 + NaN NaN 98937.6 NaN 5621 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7916 42.065 NaN 47479 35 0 8874.9 0.262 -1 HPDVTEAML 9 31 514.7393792307885 1027.4642055283769 2 514.739501953125 MULTI HCD FTMS 0 0 0 7909 8961.6416015625 0.11435051220917303 19 -0.5444259643554688 7 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 7.289230182591677 0.29575926068275815 1 A{M(Oxidation (M))|F}{I|L} 3 -1 29.693 0 0 2.8899 0 0 678.2984486310562 0 678.2984486310562 0 29.69273760456403 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F}{I|L} 2.8899 + + 4 NaN NaN 80261.1 NaN 5622 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7917 42.068 NaN 29156 35 0 4739.4 0.261 -1 HMVSDEYEQL 10 15 633.7691406777018 1265.5237284222035 2 633.7683715820312 MULTI HCD FTMS 0 0 0 7909 24520.140625 1 0 0 8 Oxidation (M) _HM(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 5.296884461304476 0.4472664531305844 1 YEQ{I|L} 4 -1 31.938 0 0 2.5237 0 0 714.2659779279312 0 714.2659779279312 0 31.938200260161125 0 0 0 0 0 0 0 YEQ{I|L} 2.5237 + + 8 NaN NaN 87790.7 NaN 5623 2292 7909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7919 42.073 NaN 599760 35 0 69641 0.327 + 13984 KYSLIKGNF 9 89 535.3053760675239 1068.5961992018476 2 535.3052978515625 MULTI HCD FTMS 0 0 0 7918 360216.28125 0.08652395253431723 12 -0.3364143371582031 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 143.90916361153978 1.5265063399744E-05 1 KYS{I|L}{I|L}K 6 3 70.161 0 0 6.5658 0 0 0 333.11936365299067 333.11936365299067 46.34917716424694 0 0 0 0 1.9291746928241125 0 0.5629529932484498 1.0114393726401687 + KYS{I|L}{I|L}K 6.5658 + + 1295 + NaN NaN 180474.5 NaN 5624 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7920 42.078 NaN 150710 35 0 20200 0.261 + 24507 RYLEKPMEI 9 42 589.8153106192221 1177.6160683052442 2 589.8150634765625 MULTI HCD FTMS 0 0 0 7918 89881.421875 0.18446577564176483 8 -0.22089385986328125 2 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 29.84058131909904 0.11198220037953927 1 {I|L}{M(Oxidation (M))|F}VEKE 6 6 61.943 0 0 5.2601 0 0 0 429.22541223697505 429.22541223697505 43.75569708000178 0 0 0 0 0.8807196863200843 0 0.9247425010840047 0.4247425010840047 {I|L}{M(Oxidation (M))|F}VEKE 5.2601 - 53 + NaN NaN 112161.2 NaN 5625 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7921 42.081 NaN 260970 35 0 53234 0.261 -1 HPFFKDMSL 9 45 569.2733363548385 1136.532119776477 2 569.2731323242188 MULTI HCD FTMS 0 0 0 7918 104121.328125 0.33341620666049376 11 -0.30999755859375 3 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 12.240655878213236 0.2545997876781172 1 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3293974460851 752.3293974460851 26.593793813122062 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 17 + NaN NaN 135989.7 NaN 5626 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7922 42.084 NaN 50779 35 0 5378 0.261 + 8711 HGVAEKMPTGS 11 31 557.2709106834802 NaN 0 557.2822875976562 PEAK HCD FTMS 0 0 0 7918 8762.69921875 1 0 0 4 Unmodified _HGVAEKMPTGS_ REV__ENSG00000166166|ENST00000389749|TRMT61A 5.296884461304476 0.3270944076746277 1 D 1 -1 4.6041 0 0 0.41384 0 0 311.1459340605166 683.3351534479124 994.481087508429 0 0 0 0 0 0 0 0 0 D 0.41384 - 1 + NaN NaN 89878.6 NaN 5627 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7923 42.088 NaN 50316 35 0 7187.1 0.263 + 973 AYFKRYQVKF 10 31 450.5832288773022 1348.7278572321065 3 450.58282470703125 MULTI HCD FTMS 0 0 0 7918 9964.1201171875 0.23581265685777478 9 -0.247222900390625 5 Unmodified _AYFKRYQVKF_ ENSG00000122406|ENST00000370321|RPL5 6.630372943996041 0.44020808660041416 1 {M(Oxidation (M))|F} 1 9 13.495 0 0 1.0006 0 0 1183.6490283520268 0 1183.6490283520268 0 10.395906230238126 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0006 + + 4 + NaN NaN 92905.5 NaN 5628 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7924 42.091 NaN 45811 35 0 6148 0.261 + -1 CPCLPCPPLL 10 23 613.7898196616339 1225.5650863900678 2 613.7890014648438 MULTI HCD FTMS 0 0 0 7918 12254.134765625 0.5780985629533817 1 -0.026336669921875 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PC(Carbamidomethyl (C))LPC(Carbamidomethyl (C))PPLL_ REV__ENST00000530174.1_1_11:65392695-65393791:+|nuORF 7.910154910731844 0.4334339971971892 1 P{I|L}{I|L} 3 -1 30.005 0 0 2.4483 0 0 884.3316539798229 0 884.3316539798229 0 26.510234424404686 0 0 0 0.3807196863200844 0 0 0 P{I|L}{I|L} 2.4483 + + 5 NaN NaN 92994.6 NaN 5629 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7925 42.094 NaN 34540 35 0 5587 0.261 + -1 DEDEEQCCS 9 27 586.1779537516462 NaN 0 586.177490234375 PEAK HCD FTMS 0 0 0 7918 17741.349609375 1 0 0 7 2 Carbamidomethyl (C) _DEDEEQC(Carbamidomethyl (C))C(Carbamidomethyl (C))S_ REV__ENSG00000182324|ENST00000342291|KCNJ14 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82393.3 NaN 5630 2293 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7927 42.099 NaN 538940 35 0 64950 0.327 + 18985 NASEDRLEL 9 75 523.7589697932202 1045.5033866532403 2 523.7587280273438 MULTI HCD FTMS 0 0 0 7926 308959.5625 0.5302107370143041 3 -0.079132080078125 1 Unmodified _NASEDRLEL_ ENSG00000175073|ENST00000310421|VCPIP1 104.48436234954404 0.0038428467764084714 1 {[QG]|[NA]}SEDR{I|L}E{I|L} 9 0 + 82.432 0 0 7.8844 7.8844 87.123 0 0 0 1.6896155137222024 1.6896155137222024 1.6896155137222024 1.6896155137222024 0 2.3424778212679485 1.6989700043360187 0.8494850021680094 1.066901560044258 + + {[QG]|[NA]}SEDR{I|L}E{I|L};NASEDR{I|L}E{I|L};{[QG]|[NA]}SE[Q{I|L}]S{[QG]|[NA]}{I|L} 7.8844;7.7228;5.8172 +;+;- + 558 NaN NaN 174277.7 NaN 5631 2294 7926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7928 42.104 NaN 302020 35 0 38796 0.261 + -1 VCHLWASF 8 54 510.243435027048 1018.472317120896 2 510.2337646484375 MULTI HCD FTMS 0 0 0 7926 15991.3447265625 0.35737727908769185 7 -0.19455718994140625 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 34.18733598223924 0.30560024141787767 1 TSAA{[ET]|[MV]}AAS{M(Oxidation (M))|F} 10 -1 58.849 0 0 5.7782 0 0 64.03082994194331 0 64.03082994194331 0 41.542294029923 0 0 0 0 0 1.6989700043360187 0 TSAA{[ET]|[MV]}AAS{M(Oxidation (M))|F} 5.7782 - 308 + NaN NaN 131683.9 NaN 5632 2294 7926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7929 42.107 NaN 138080 35 0 35177 0.261 + 11490 IYQRDPLKL 9 33 573.3373633510924 1144.6601737689848 2 573.3368530273438 MULTI HCD FTMS 0 0 0 7926 71409.2265625 0.7330600806717438 3 -0.079132080078125 3 Unmodified _IYQRDPLKL_ ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant 15.248480904072842 0.22861284681709862 1 {I|L}PR 3 7 18.188 0 0 1.5889 0 0 259.18960554339793 516.1976412408811 775.3872467842791 0 0 0 0 0 1 0 0 0 {I|L}PR 1.5889 - 13 + NaN NaN 103581.6 NaN 5633 2294 7926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7930 42.111 NaN 31689 35 0 5585.4 0.261 + 32843 WVLYVPEAAF 10 22 597.8129592102639 1193.6113654873277 2 597.8123779296875 MULTI HCD FTMS 0 0 0 7926 13941.3662109375 0.594669131659774 12 -0.33983612060546875 4 Unmodified _WVLYVPEAAF_ REV__ENST00000425203.1_1_22:31644623-31654315:+|nuORF 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 87441.3 NaN 5634 2294 7926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7932 42.116 NaN 885470 35 0 124460 0.327 + 24658 RYLSPKYIKMF 11 90 487.93555228524644 1460.7848274559394 3 488.26953125 MULTI HCD FTMS 0 0 0 7931 252634.3125 0.8316272093784011 -1 0.01641082763671875 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 72.18682940623714 0.013206789122802947 1 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 107.08 0 0 7.3303 7.3303 95.349 0 0 0 17.92175523043153 72.24336923588389 17.92175523043153 54.17745231043331 0 2.6989700043360187 1.5228787452803376 2.416386562212267 0 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QT]T[RP][KP]V{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[QT][{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]K[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[K{I|L}]Y[QT][{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.3303;3.6215;2.7705;2.4056;1.6883 -;-;-;-;- 663 NaN NaN 236220.8 NaN 5635 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7933 42.12 NaN 318320 35 0 35714 0.261 -1 TIGVDFEMERF 11 61 453.87994203616904 1358.617996708707 3 453.87982177734375 MULTI HCD FTMS 0 0 0 7931 113238.8203125 0.34821616730094584 17 -0.4983940124511719 2 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 8.751783647060863 0.3805383164556717 1 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 5 -1 36.04 0 0 2.6527 0 0 575.2809815761267 0 575.2809815761267 0 29.050023300178403 0 0 0 0.8494850021680094 0 0 0 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 2.6527 - 68 + NaN NaN 126315.2 NaN 5636 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7934 42.124 NaN 168870 35 0 15647 0.261 + 12991 KYIQEAEML 9 54 570.7840229963078 1139.5534930594156 2 570.7835083007812 MULTI HCD FTMS 0 0 0 7931 81795.7734375 0.7052048930697632 4 -0.11547088623046875 3 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 53.40400417844725 0.026808823219830042 1 QEAE{M(Oxidation (M))|F}{I|L} 6 3 68.448 0 0 6.0066 0 0 404.2419605939469 0 404.2419605939469 0 62.50630971391878 0 0 0 2.3807196863200843 0 0 0.3494850021680094 + QEAE{M(Oxidation (M))|F}{I|L} 6.0066 + + 155 NaN NaN 106201.1 NaN 5637 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7935 42.127 NaN 213200 35 0 24750 0.261 + 7134 FSCISGYSF 9 48 505.71747836566175 1009.4204037981235 2 505.7174072265625 MULTI HCD FTMS 0 0 0 7931 25434.501953125 0.5293252461892342 5 -0.1518096923828125 4 Unmodified _FSCISGYSF_ REV__ENSG00000174175|ENST00000263686|SELP 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4468 0 0 844.3413765537861 0 844.3413765537861 0 7.437106056797374 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4468 + + 16 + NaN NaN 116599.1 NaN 5638 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7936 42.13 NaN 50267 35 0 4780.7 0.261 + 3922 EPSVNLLSPH 10 33 546.7889041372188 NaN 0 546.7891235351562 PEAK HCD FTMS 0 0 0 7931 13353.146484375 0.6114636915397451 1 -0.03302001953125 5 Unmodified _EPSVNLLSPH_ HIVEP2|p.L385V|1|0.29|ENSG00000010818|chr6:142773586-142773586|G/C|missense_variant 2.735195868890462 0.33784334045437464 1 NN 2 9 9.464 0 0 0.86701 0 0 130.13290973752493 730.3354586236936 860.4683683612186 0 0 0 0 0 0 0 0 0 NN 0.86701 - 32 + NaN NaN 93386.6 NaN 5639 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7937 42.134 NaN 82469 35 0 13483 0.261 -1 HPDVATQMVL 10 44 563.7816909239463 1125.5488289146924 2 563.7816162109375 MULTI HCD FTMS 0 0 0 7931 19393.087890625 0.6496247532648854 -1 0.01641082763671875 6 Oxidation (M) _HPDVATQM(Oxidation (M))VL_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;LIN54-SEC31A|1|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|4|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|7|fusion;LIN54-SEC31A|8|fusion;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 8.155526934196011 0.43213520406898465 1 V{I|L} 2 -1 20.969 0 0 1.863 0 0 895.3773060529312 0 895.3773060529312 0 15.127881306118454 0 0 0 0 0 0 0 V{I|L} 1.863 + + 4 NaN NaN 98552.8 NaN 5640 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7938 42.137 NaN 25381 35 0 5029.3 0.261 + -1 LKYFLYCANG 10 23 624.8069509676816 NaN 0 624.8074951171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _LKYFLYC(Carbamidomethyl (C))ANG_ REV__ENST00000392341.5_1_17:80196852-80197050:+|nuORF 1.4819007175156935 0.33891598740166873 1 AR 2 -1 15.969 0 0 1.28 0 0 437.2722138476693 580.1748140924436 1017.447027940113 0 0 0 0 0 0.5 0 0 0 AR 1.28 - 3 + NaN NaN 85621 NaN 5641 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7939 42.14 NaN 58814 35 0 7908.6 0.264 + 23761 RRIVVYFKM 9 34 404.573902147879 1210.699877043837 3 404.5743103027344 MULTI HCD FTMS 0 0 0 7931 8868.0810546875 0.23815762515941577 10 -0.2936668395996094 8 Unmodified _RRIVVYFKM_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 2.0597508629832335 0.3354026079994024 1 M 1 -1 21.99 0 0 1.8163 0 0 1061.6487733834838 0 1061.6487733834838 0 8.89075625191822 0 0 0 0.5 0 0 0 M 1.8163 + + 3 + NaN NaN 91520.4 NaN 5642 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7940 42.144 NaN 23705 35 0 4044.4 0.261 + -1 LCDPNEVLKW 10 22 637.3174319628183 1272.6203109924365 2 637.31689453125 MULTI HCD FTMS 0 0 0 7931 15636.3994140625 0.7901916031692404 -3 0.0724029541015625 9 Carbamidomethyl (C) _LC(Carbamidomethyl (C))DPNEVLKW_ REV__ENST00000503879.5_1_4:108969658-108999477:-|nuORF 1.3295316138638542 0.46826628246186464 1 VEE 3 -1 21.198 0 0 1.6657 0 0 371.13539995903653 541.3120821588499 912.4474821178865 0 0 0 0 0 0.5 0 0 0 VEE 1.6657 - 8 + NaN NaN 91928.5 NaN 5643 2295 7931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7942 42.149 NaN 305080 35 0 42919 0.327 + 34409 YPESESIMM 9 46 559.7230933114936 1117.431633689787 2 559.7222900390625 MULTI HCD FTMS 0 0 0 7941 162573.96875 0.9579304490649697 -3 0.07576751708984375 1 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 64.23631603340823 0.01165516075559909 1 EYS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 67.74 0 0 6.0621 0 0 313.12837416816564 0 313.12837416816564 0 56.95336540357545 0 0 0 2 0 1.1989700043360187 0 EYS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.0621 - 184 NaN NaN 130071.2 NaN 5644 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7943 42.153 NaN 140570 35 0 16993 0.261 + 31125 VTRFNEEV 8 40 497.25352933890457 992.4925057446092 2 497.253173828125 MULTI HCD FTMS 0 0 0 7941 80472.0625 0.5760554243172626 4 -0.1187896728515625 2 Unmodified _VTRFNEEV_ ENSG00000259207|ENST00000559488|ITGB3;nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3 24.67388899826682 0.4122521268485776 1 {[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]}[R{M(Oxidation (M))|F}]{NN|[MP]|[D{I|L}]|[EV]} 8 3 + 14.951 0 0 1.5064 1.5064 58.847 0 0 0 0 2.7321943351906004 0 0 0 0.5 1.5228787452803376 0.4247425010840047 0.5 {[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]}[R{M(Oxidation (M))|F}]{NN|[MP]|[D{I|L}]|[EV]};{NN|[MP]|[D{I|L}]|[EV]}[KS][R{M(Oxidation (M))|F}]{NN|[MP]|[D{I|L}]|[EV]};{NN|[MP]|[D{I|L}]|[EV]}[KS][DG]{I|L}[{M(Oxidation (M))|F}V];{[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[RE]|[WV]}[{M(Oxidation (M))|F}V] 1.5064;1.5064;0.82122;0.47181 -;-;-;- 50 NaN NaN 108643.3 NaN 5645 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7944 42.157 NaN 77721 35 0 11472 0.261 + 11902 KFIDTTSKF 9 31 543.79515636783 1085.57575980246 2 543.7945556640625 MULTI HCD FTMS 0 0 0 7941 55705.50390625 0.006532584514291109 96 -2.7268905639648438 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 19.625955294349634 0.19079243933902879 1 K{M(Oxidation (M))|F}{I|L}DG 5 5 43.443 0 0 4.0019 0 0 0 522.2576387994749 522.2576387994749 14.503187623076954 0 0 0 0 0.5 0 0.5 0 K{M(Oxidation (M))|F}{I|L}DG 4.0019 - 18 + NaN NaN 97718.1 NaN 5646 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7945 42.16 NaN 169560 35 0 22817 0.261 + 17706 MAVIDGNVM 9 43 491.2225379937559 980.4305230543118 2 491.2220764160156 MULTI HCD FTMS 0 0 0 7941 74303.5546875 1 0 0 4 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 74.92900055777586 0.007493270374442853 1 {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F} 9 0 + 65.978 0 0 6.7295 6.7295 85.162 0 0 0 1.6021969467540487 1.6021969467540487 1.6021969467540487 1.6021969467540487 0 2.305462187404089 0 0.3252574989159953 0.3807196863200844 + + {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F};MSV{I|L}D[NG]V{M(Oxidation (M))|F} 6.7295;6.5661 +;- + 80 NaN NaN 114557.1 NaN 5647 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7946 42.164 NaN 177030 35 0 24296 0.261 + 32997 YATHPFKF 8 40 505.75815712968244 1009.5017613261649 2 505.757568359375 MULTI HCD FTMS 0 0 0 7941 27123.32421875 0.4055703837759954 5 -0.1451263427734375 5 Unmodified _YATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 39.957323273324995 0.23147789240432073 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]P{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 8 0 + 48.862 0 0 4.8402 4.8402 90.738 0 0 0 23.645162531850872 40.66183773464459 23.645162531850872 48.86168767277148 0 1.4731975075880328 2 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]P{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4.8402 + + 14 NaN NaN 114606 NaN 5648 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7947 42.167 NaN 68949 35 0 15437 0.261 + -1 YMYGAPFS 8 31 476.1981833591701 NaN 0 476.1982421875 PEAK HCD FTMS 0 0 0 7941 19721.76171875 0.6604761282124859 15 -0.43900299072265625 6 Oxidation (M) _YM(Oxidation (M))YGAPFS_ REV__ENSG00000104419|ENST00000323851|NDRG1;REV__ENST00000518010.5_1_8:134269105-134296554:-|nuORF;REV__nc|ENSG00000104419|Q92597-2|NDRG1;REV__nc|ENSG00000104419|Q92597-3|NDRG1 2.8892196856762586 0.38822285293237185 1 Y 1 -1 6.9897 0 0 0.73546 0 0 162.99580578557965 621.3057345025999 784.3015402881795 0 0 0 0 0 0 0 0 0 Y 0.73546 + + 8 + NaN NaN 97981.1 NaN 5649 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7948 42.17 NaN 50481 35 0 6120.1 0.261 + 10769 ISHHTTVPLT 10 29 553.303596432319 1104.5926399314378 2 553.3041381835938 MULTI HCD FTMS 0 0 0 7941 11026.3671875 0.016825138580370894 36 -1.04632568359375 7 Unmodified _ISHHTTVPLT_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7 5.731851221503515 0.44496410492002586 1 G 1 10 2.4743 0 0 0.224 0 0 516.8772601480379 527.6779879205686 1044.5552480686065 0 0 0 0 0 0 0 0 0 G 0.224 - 5 + NaN NaN 92114.8 NaN 5650 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7949 42.173 NaN 48848 35 0 5168.9 0.261 -1 KYVGAVQML 9 30 512.7781576689852 NaN 0 512.7775268554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _KYVGAVQM(Oxidation (M))L_ ENSG00000048471|ENST00000566228|SNX29;nc|ENSG00000048471|Q8TEQ0-2|SNX29 24.020572477871973 0.16041128140741606 1 {M(Oxidation (M))|F}QVQ 4 -1 29.412 0 0 2.8736 0 0 131.09452140489958 387.20307336978755 518.2975947746871 0 0 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}QVQ 2.8736 - 61 + NaN NaN 92132.5 NaN 5651 2296 7941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7951 42.179 NaN 885370 35 0 130700 0.327 + 1925 DADLREQAL 9 75 515.7618297558192 1029.5091065784384 2 515.7617797851562 MULTI HCD FTMS 0 0 0 7950 537447.1875 0.24604233488507835 -4 0.10546875 1 Unmodified _DADLREQAL_ ENSG00000196878|ENST00000356082|LAMB3 125.0377797344192 0.0009059125702818869 1 {[DA]|[EG]}D{I|L}REQA{I|L} 9 0 + 99.553 0 0 9.6699 9.6699 91.047 0 0 0 6.00833760139686 6.00833760139686 6.00833760139686 5.0565842292838425 0 2.7302046884880937 1.5228787452803376 0.9392404878284264 0.3807196863200844 + + {[DA]|[EG]}D{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}RAADA{I|L};{[DA]|[EG]}D{I|L}RE[AG]A{I|L};{[DA]|[EG]}{I|L}DREQA{I|L};{[DA]|[EG]}{I|L}DRAADA{I|L};{[DA]|[EG]}{I|L}DRE[AG]A{I|L};{[DA]|[EG]}{I|L}RDEQA{I|L};{[DA]|[EG]}{I|L}RDAADA{I|L};{[DA]|[EG]}[RV]EEQA{I|L};{[DA]|[EG]}{I|L}RDE[AG]A{I|L} 9.6699;9.1788;8.7755;8.2249;7.7337;7.3305;7.2758;6.7846;6.5968;6.3813 +;-;-;-;-;-;-;-;-;- + 1652 NaN NaN 216371.5 NaN 5652 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7952 42.183 NaN 250360 35 0 37714 0.261 + 3043 EAFPHDSQL 9 47 522.2431934826263 1042.4718340320526 2 522.2427978515625 MULTI HCD FTMS 0 0 0 7950 156462.859375 0.48501102577058336 7 -0.20452880859375 2 Unmodified _EAFPHDSQL_ ENSG00000071894|ENST00000616140|CPSF1 49.93300154707207 0.03166451819912738 1 {[CP]|[EA]}{M(Oxidation (M))|F} 3 6 19.85 0 0 1.9042 0 0 0 692.3011241533994 692.3011241533994 12.86052793717261 0 0 0 0 1 0 0.805462187404089 0 + {[CP]|[EA]}{M(Oxidation (M))|F} 1.9042 + + 55 NaN NaN 118367.2 NaN 5653 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7953 42.187 NaN 965000 35 0 101640 0.261 + 24120 RYATQLQQI 9 89 560.8090483662676 1119.603543799335 2 560.8087158203125 MULTI HCD FTMS 0 0 0 7950 325258.96875 0.4186822636795267 -3 0.079132080078125 3 Unmodified _RYATQLQQI_ CON__A2A4G1;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15 100.0907132914201 0.004261551473353346 1 [YR]ATQ{I|L}QQ{I|L} 9 0 + 76.921 0 0 6.8704 6.8704 89.542 0 0 0 4.762036441594191 52.94531259372398 4.762036441594191 9.208187539523749 0 1.9291746928241125 0 0.3807196863200844 0.6989700043360187 + + [YR]ATQ{I|L}QQ{I|L};[YR]AT[AG]{I|L}QQ{I|L};[YR]ATQ{I|L}[AG]Q{I|L};[YR]ATQ{I|L}Q[AG]{I|L};[YR]AT[AG]{I|L}[AG]Q{I|L};[YR]AT[AG]{I|L}Q[AG]{I|L};[YR]ATQ{I|L}[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}Q{I|L}QTK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[Q{I|L}]Q{[QN]|[E{I|L}]|[KN]}TK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};QQ{I|L}{[QN]|[E{I|L}]|[KN]}TK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6.8704;6.048;6.048;6.048;5.2294;5.2294;5.2294;0.38338;0.36754;0.05539 +;-;-;-;-;-;-;-;-;- + 1425 NaN NaN 228984.1 NaN 5654 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7954 42.19 NaN 584730 35 0 198000 0.261 + 22983 RADESTYVL 9 55 527.2643534515837 1052.5141539699673 2 527.2644653320312 MULTI HCD FTMS 0 0 0 7950 222793.359375 0.23103820313185092 -4 0.10546875 4 Unmodified _RADESTYVL_ ENSG00000115267|ENST00000649979|IFIH1 23.789781309258295 0.1548179064208189 1 ESTYV{I|L} 6 3 47.524 0 0 4.5153 0 0 342.1650562970719 0 342.1650562970719 0 19.80835659879972 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + ESTYV{I|L} 4.5153 + + 74 NaN NaN 172260.3 NaN 5655 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7955 42.193 NaN 84535 35 0 11515 0.261 + 26576 SVSHGEAAVI 10 31 485.25353667655173 968.4925204199035 2 485.25311279296875 MULTI HCD FTMS 0 0 0 7950 52545.99609375 0.16171009093615887 8 -0.23094558715820312 5 Unmodified _SVSHGEAAVI_ ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-3|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant 10.073929032068715 0.4168838835836452 1 V{I|L} 2 8 25.969 0 0 2.6814 0 0 738.3298896767955 0 738.3298896767955 0 17.552725051033065 0 0 0 0.5 0 0 0 + V{I|L} 2.6814 + + 23 NaN NaN 89865.3 NaN 5656 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7956 42.197 NaN 96962 35 0 17239 0.261 -1 DMHTEVTTL 9 29 531.7421757598927 1061.4697985865853 2 531.74169921875 MULTI HCD FTMS 0 0 0 7950 49950.90625 0.0819146715103953 34 -0.9869384765625 6 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 25.399314129420986 0.14091189997036632 1 VTT{I|L} 4 -1 50.433 0 0 4.7512 0 0 629.2089100568375 0 629.2089100568375 0 43.44335023848103 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.7512 + + 12 NaN NaN 94604.4 NaN 5657 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7957 42.2 NaN 160950 35 0 22615 0.261 + 2059 DEIERKFDKW 10 43 455.89786526690307 1364.6717664009093 3 456.232177734375 MULTI HCD FTMS 0 0 0 7950 44244.38671875 0.785379915063089 -2 0.06272125244140625 7 Unmodified _DEIERKFDKW_ ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31 19.143941131932106 0.33204605063940484 1 AD 2 9 22.206 0 0 1.6272 0 0 1160.5821829221693 0 1160.5821829221693 0 6.00833760139686 0 0 0 0.2742275032520141 0 0 0 AD 1.6272 - 40 NaN NaN 116213 NaN 5658 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7958 42.203 NaN 102280 35 0 20647 0.261 -1 LCYAAFVL 8 35 478.7473018145598 955.4800506959197 2 478.7556457519531 MULTI HCD FTMS 0 0 0 7950 21821.935546875 1 0 0 8 Carbamidomethyl (C) _LC(Carbamidomethyl (C))YAAFVL_ ENSG00000173638|ENST00000311124|SLC19A1;nc|ENSG00000173638|P41440-2|SLC19A1;nc|ENSG00000173638|P41440-3|SLC19A1 6.354104778181461 0.5325651638111438 1 T{I|L} 2 -1 23.711 0 0 2.4816 0 0 723.3373429846281 0 723.3373429846281 0 19.10728139283883 0 0 0 0.4247425010840047 0 0 0 T{I|L} 2.4816 - 10 NaN NaN 102711.8 NaN 5659 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7959 42.207 NaN 74571 35 0 15693 0.261 + 13351 KYMETIEKL 9 27 577.809987159261 1153.605421385322 2 577.8092651367188 MULTI HCD FTMS 0 0 0 7950 39644.20703125 0.7013062064482969 -3 0.079132080078125 9 Unmodified _KYMETIEKL_ ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion;PPP1R21-GTF2A1L|3|fusion 9.5439744041441 0.27789851728676895 1 KYP 3 7 23.188 0 0 2.01 0 0 0 762.3512208616971 762.3512208616971 2.2184874961635614 0 0 0 0 0 0 0 0 KYP 2.01 - 6 + NaN NaN 92361.6 NaN 5660 2297 7950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7961 42.212 NaN 194790 35 0 18196 0.327 + 913 AYATHPFKF 9 54 541.2768411675763 1080.5391294019526 2 541.276611328125 MULTI HCD FTMS 0 0 0 7960 131490.421875 0.2413315347624168 7 -0.19794082641601562 1 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 75.76082778847304 0.0072241045649327805 1 AYATR 5 5 62.977 0 0 5.8283 0 0 0 515.2222384088499 515.2222384088499 5.591225434940412 0 0 0 0 1.1747425010840047 2 0.3807196863200844 0 AYATR 5.8283 - 287 + NaN NaN 104719.8 NaN 5661 2298 7960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7962 42.216 NaN 72834 35 0 12440 0.261 + 21665 PYTKVEESF 9 44 550.2690284698276 1098.5235040064551 2 550.2687377929688 MULTI HCD FTMS 0 0 0 7960 57646.07421875 0.4244107988706149 4 -0.1087493896484375 2 Unmodified _PYTKVEESF_ ENSG00000182858|ENST00000330817|ALG12 43.77239144664712 0.04802738721622131 1 PY 2 7 44.776 0 0 4.076 0 0 0 835.3845870607211 835.3845870607211 5.836134377877329 0 0 0 0 0.3807196863200844 2 0 0 + PY 4.076 + + 22 + NaN NaN 99916 NaN 5662 2298 7960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7963 42.22 NaN 100780 35 0 32858 0.263 + -1 PAKKDCVPCVW 11 34 434.88204968672255 NaN 0 434.8817138671875 PEAK HCD FTMS 0 0 0 7960 78173.2734375 0.7773327878791081 73 -2.0711822509765625 3 Carbamidomethyl (C) _PAKKDC(Carbamidomethyl (C))VPCVW_ REV__ENSG00000033800|ENST00000249636|PIAS1;REV__nc|ENSG00000033800|O75925-2|PIAS1 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94979 NaN 5663 2298 7960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7964 42.223 NaN 95159 35 0 20174 0.261 -1 PFSLFCPP 8 33 482.7325145926417 NaN 0 482.7218322753906 PEAK HCD FTMS 0 0 0 7960 4194.9189453125 0.2748654866007461 -3 0.09572601318359375 4 Carbamidomethyl (C) _PFSLFC(Carbamidomethyl (C))PP_ ENST00000463095.2_1_10:55581620-55664971:-|nuORF;nc|ENSG00000150275|Q96QU1-2|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15 2.577480529830294 0.38822285293237185 1 E 1 -1 10.485 0 0 1.0882 0 0 131.1160049554092 700.2685514349163 831.3845563903255 0 0 0 0 0 0 0 0.3494850021680094 0 E 1.0882 - 3 + NaN NaN 102152.2 NaN 5664 2298 7960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7965 42.226 NaN 62234 35 0 13385 0.261 + 35402 YYEEQHPEL 9 28 604.2670896750219 1206.5196264168437 2 604.2664184570312 MULTI HCD FTMS 0 0 0 7960 39037.67578125 0.01696604048786355 49 -1.3920783996582031 5 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 26.268140514670165 0.13340543277302316 1 YYE 3 6 34.705 0 0 2.8765 0 0 0 748.3279851450724 748.3279851450724 25.79181246047625 0 0 0 0 0.4247425010840047 2 0 0 + YYE 2.8765 + + 12 + NaN NaN 88644 NaN 5665 2298 7960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7967 42.231 NaN 216800 35 0 75887 0.327 + -1 CPGMPGTVL 9 34 474.2195817069027 946.4246104806055 2 474.2191467285156 MULTI HCD FTMS 0 0 0 7966 144720.234375 0.4739597069810755 -3 0.08245086669921875 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PGM(Oxidation (M))PGTVL_ REV__ENSG00000102313|ENST00000218436|ITIH6 12.531546534597751 0.2520865569484384 1 TV{I|L} 3 -1 30.177 0 0 3.1886 0 0 615.2128773419937 0 615.2128773419937 0 11.76091259055681 0 0 0 0.4247425010840047 0 0.4247425010840047 0 TV{I|L} 3.1886 + + 34 NaN NaN 131919.3 NaN 5666 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7968 42.236 NaN 215920 35 0 70456 0.261 -1 IMEMILQALG 10 39 567.7983097622215 NaN 0 567.8081665039062 PEAK HCD FTMS 0 0 0 7966 5934.4697265625 0.6384324573342446 -1 0.019744873046875 2 Oxidation (M) _IM(Oxidation (M))EMILQALG_ ENSG00000142279|ENST00000590071|WTIP 8.745405648335112 0.33269943387702366 1 QQ 2 -1 13.583 0 0 1.1983 0 0 131.08467763432571 743.3410738580686 874.4257514923943 0 0 0 0 0 0.5 0 0 0 QQ 1.1983 - 6 + NaN NaN 130878.8 NaN 5667 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7969 42.239 NaN 93863 35 0 11955 0.261 + 24508 RYLEKPMEI 9 48 589.8153106192221 1177.6160683052442 2 589.815185546875 MULTI HCD FTMS 0 0 0 7966 57643.12109375 0.11830234570341536 14 -0.40929412841796875 3 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 15.248480904072842 0.22861284681709862 1 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}KE 6 6 30.507 0 0 2.5906 0 0 0 429.2234285943969 429.2234285943969 22.51398397300033 0 0 0 0 0.5 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}KE 2.5906 - 55 + NaN NaN 95204.4 NaN 5668 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7970 42.243 NaN 82144 35 0 12130 0.261 + -1 VCHLWASF 8 22 510.243435027048 1018.472317120896 2 510.23382568359375 MULTI HCD FTMS 0 0 0 7966 2849.43505859375 0.06367965706385038 12 -0.3565521240234375 4 Carbamidomethyl (C) _VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 26.34127834903884 0.3999841173197873 1 SAA[WD]AS{M(Oxidation (M))|F} 8 -1 45.623 0 0 4.4795 0 0 165.09820450187368 0 165.09820450187368 0 35.16502535772155 0 0 0 0 0 0.9247425010840047 0 SAA[WD]AS{M(Oxidation (M))|F} 4.4795 - 124 + NaN NaN 89807.8 NaN 5669 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7971 42.246 NaN 166490 35 0 15616 0.261 + 18345 MPISSHVDL 9 66 507.749757749227 1013.484962565254 2 507.7496643066406 MULTI HCD FTMS 0 0 0 7966 34595.69921875 0.5308839120726906 -2 0.0527496337890625 5 Oxidation (M) _M(Oxidation (M))PISSHVDL_ ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B 68.08070601005525 0.009709267492204555 1 VD{I|L} 3 6 28.837 0 0 2.8453 0 0 668.2951684202937 0 668.2951684202937 0 3.333558811666684 0 0 0 0.5649093276264391 0 0 0 + VD{I|L} 2.8453 + + 229 NaN NaN 112395.5 NaN 5670 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7972 42.249 NaN 43687 35 0 5644 0.261 -1 LWCFWLCVSTP 11 28 471.2210643182026 1410.6413635548079 3 471.2202453613281 MULTI HCD FTMS 0 0 0 7966 27308.8828125 0.9329410511869751 1 -0.03633880615234375 6 Carbamidomethyl (C) _LWC(Carbamidomethyl (C))FWLCVSTP_ nc|ENSG00000173662|Q7RTX1-3|TAS1R1 0.4545168274142398 0.41692731010159206 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94351.3 NaN 5671 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7973 42.253 NaN 70562 35 0 7180.8 0.261 + 14915 LLCHWAWREP 10 36 437.5535162074327 1309.6387192224981 3 437.55303955078125 MULTI HCD FTMS 0 0 0 7966 27108.310546875 0.5347987316911902 -13 0.35921478271484375 7 Unmodified _LLCHWAWREP_ ENST00000300403.10_1_20:30388876-30389098:+|nuORF 3.072263186857199 0.4590417271953214 1 {I|L} 1 9 3.0989 0 0 0.23663 0 0 901.9051204449576 291.6307467096313 1193.535867154589 0 0 0 0 0 0 0 0 0 + {I|L} 0.23663 + + 3 + NaN NaN 105026.7 NaN 5672 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7974 42.256 NaN 163210 35 0 17752 0.261 -1 VRSMYLMIKAF 11 54 458.91316668073387 1373.7176706424016 3 458.9140625 MULTI HCD FTMS 0 0 0 7966 23833.712890625 0.9181212090296064 1 -0.03633880615234375 8 Oxidation (M) _VRSMYLM(Oxidation (M))IKAF_ ENSG00000164039|ENST00000296424|BDH2;ENST00000492366.5_1_4:104007535-104017411:-|nuORF;nc|ENSG00000164039|Q9BUT1-2|BDH2;nc|ENSG00000164039|Q9BUT1-3|BDH2 4.11662792887243 0.40086653484894175 1 Q{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.8904 0 0 1080.5819392926846 0 1080.5819392926846 0 15.511525224473813 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F} 1.8904 - 20 NaN NaN 113883.2 NaN 5673 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7975 42.259 NaN 52114 35 0 8106.8 0.261 + 29387 TYQEVAQKF 9 31 557.2821582971296 1112.5497636610592 2 557.28125 MULTI HCD FTMS 0 0 0 7966 17534.025390625 0.12343659355287782 23 -0.6733512878417969 9 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 10.073929032068715 0.27331982688540024 1 K{M(Oxidation (M))|F} 2 7 17.959 0 0 1.6142 0 0 819.3757657135967 0 819.3757657135967 0 12.474250108400469 0 0 0 0 0 0 0 + K{M(Oxidation (M))|F} 1.6142 + + 22 + NaN NaN 94008.7 NaN 5674 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7976 42.263 NaN 23925 35 0 3639.8 0.261 -1 0 17 620.830243297559 1239.645933661918 2 620.8302001953125 MULTI HCD FTMS 0 0 0 7966 24538.845703125 0.02366210553768975 27 -0.7822456359863281 10 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83769.6 NaN 5675 2299 7966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7978 42.268 NaN 369040 35 0 41132 0.327 + 13985 KYSLIKGNF 9 80 535.3053760675239 1068.5961992018476 2 535.305419921875 MULTI HCD FTMS 0 0 0 7977 231211.609375 0.05553702971316096 19 -0.5479698181152344 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 107.09958533191995 0.0034159042678574016 1 KYS{I|L}{I|L}K 6 3 70.44 0 0 6.5919 0 0 0 333.1204012506469 333.1204012506469 45.003938246929906 0 0 0 0 2.0451140161145327 0 0.5994850021680094 1.0629529932484498 + KYS{I|L}{I|L}K 6.5919 + + 645 + NaN NaN 151970.5 NaN 5676 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7979 42.272 NaN 528200 35 0 67118 0.261 -1 RYLSPKYIKMF 11 73 487.93555228524644 1460.7848274559394 3 487.93536376953125 MULTI HCD FTMS 0 0 0 7977 163371.28125 0.4776235403965608 7 -0.2046661376953125 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 39.41278653710922 0.14073190061031945 1 [{M(Oxidation (M))|F}T][{I|L}A][{I|L}A]QY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 12 -1 [{M(Oxidation (M))|F}T][{I|L}A][{I|L}A]Q + + 41.956 -16.822 -2.2598 2.8721 2.8721 59.217 0 0 0 0 24.33098439955742 0 0 0 1.805462187404089 0 0 0 [{M(Oxidation (M))|F}T][{I|L}A][{I|L}A]QY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8721 - 371 + NaN NaN 170343.4 NaN 5677 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7980 42.276 NaN 391030 35 0 73047 0.261 + 24026 RWLPQKNAAQF 11 54 453.5822424007621 1357.7248978024863 3 453.582275390625 MULTI HCD FTMS 0 0 0 7977 144396.671875 1 0 0 3 Unmodified _RWLPQKNAAQF_ ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF;nc|ENSG00000221914|P63151-2|PPP2R2A 13.51866281300042 0.33929385944539686 1 Q{M(Oxidation (M))|F} 2 9 33.271 0 0 2.4505 0 0 1064.5873946874453 0 1064.5873946874453 0 26.817496819840656 0 0 0 0.805462187404089 0 0 0.4247425010840047 + Q{M(Oxidation (M))|F} 2.4505 + + 29 NaN NaN 144125.5 NaN 5678 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7981 42.279 NaN 40686 35 0 8462.2 0.261 + 3768 ENYIRLKPL 9 17 573.3373633510924 1144.6601737689848 2 573.3367919921875 MULTI HCD FTMS 0 0 0 7977 17308.01171875 0.17767749459811777 9 -0.26074981689453125 4 Unmodified _ENYIRLKPL_ ENSG00000134827|ENST00000257264|TCN1 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 98553.6 NaN 5679 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7982 42.282 NaN 56375 35 0 6985.1 0.261 + 35985 YYYEENEM 8 24 570.7134346039805 1139.412316274761 2 570.7132568359375 MULTI HCD FTMS 0 0 0 7977 9306.9599609375 0.39603400306909586 5 -0.14185714721679688 5 Unmodified _YYYEENEM_ ENSG00000129048|ENST00000249887|ACKR4 0.6014990680409731 0.5410999795511968 1 YP 2 7 17.959 0 0 1.5761 0 0 0 876.2712496393186 876.2712496393186 6.2763625255165305 0 0 0 0 0 0 0 0 YP 1.5761 - 15 + NaN NaN 102062.3 NaN 5680 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7983 42.286 NaN 18367 35 0 5269.9 0.261 + -1 LDDMSYHEIQ 10 16 633.7691406777018 1265.5237284222035 2 633.7688598632812 MULTI HCD FTMS 0 0 0 7977 8303.5693359375 0.33864281053394246 8 -0.24101638793945312 6 Oxidation (M) _LDDM(Oxidation (M))SYHEIQ_ REV__ENSG00000073282|ENST00000264731|TP63;REV__nc|ENSG00000073282|Q9H3D4-10|TP63;REV__nc|ENSG00000073282|Q9H3D4-11|TP63;REV__nc|ENSG00000073282|Q9H3D4-12|TP63;REV__nc|ENSG00000073282|Q9H3D4-2|TP63;REV__nc|ENSG00000073282|Q9H3D4-9|TP63 1.4819007175156935 0.4674597685733628 1 Q[Q{I|L}] 3 -1 10.458 0 0 0.82634 0 0 878.3284779279312 0 878.3284779279312 0 10.45757490560675 0 0 0 0 0 0 0 Q[Q{I|L}] 0.82634 - 2 NaN NaN 85714.7 NaN 5681 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7984 42.289 NaN 34997 35 0 5973.5 0.261 -1 AMMGLMAVRH 10 27 582.7689360998372 NaN 0 582.3051147460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 3 Oxidation (M) _AM(Oxidation (M))M(Oxidation (M))GLM(Oxidation (M))AVRH_ ENSG00000160285|ENST00000397728|LSS;nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS 1.4819007175156935 0.33891598740166873 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.26634 0 0 755.138658477215 258.3208407037719 1013.459499180987 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.26634 + + 1 + NaN NaN 90234.2 NaN 5682 2300 7977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7986 42.294 NaN 309180 35 0 25542 0.327 -1 KMPKFKMPSF 10 63 419.5555857130238 1255.6449277392715 3 419.5556640625 MULTI HCD FTMS 0 0 0 7985 155676.875 0.5840610560150671 -9 0.25054931640625 1 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 32.61649475675321 0.20947998662014555 1 KM[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 -1 + 52.981 0 0 4.2194 4.2194 89.942 0 0 0 30.991531334132887 16.422042885466084 16.422042885466084 52.981231377493074 0 1.5356668758921828 0 0 0 KM[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 4.2194 + + 70 + NaN NaN 148532.5 NaN 5683 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7987 42.298 NaN 98435 35 0 11320 0.261 + 11903 KFIDTTSKF 9 41 543.79515636783 1085.57575980246 2 543.7948608398438 MULTI HCD FTMS 0 0 0 7985 63880.0390625 0.007491212262513589 101 -2.8419570922851562 2 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 20.580933911654288 0.18254163597178805 1 K{M(Oxidation (M))|F}{I|L}DG 5 5 41.102 0 0 3.7862 0 0 0 522.2461031549436 522.2461031549436 19.41962823435958 0 0 0 0 0.805462187404089 0 0.5 0 K{M(Oxidation (M))|F}{I|L}DG 3.7862 - 38 + NaN NaN 110529.2 NaN 5684 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7988 42.302 NaN 99473 35 0 25012 0.261 + -1 DCCDMLDL 8 26 500.67508606813306 999.3356192030661 2 500.6745910644531 MULTI HCD FTMS 0 0 0 7985 49211.4453125 0.6980678713560297 -2 0.06267547607421875 3 Carbamidomethyl (C),Oxidation (M) _DC(Carbamidomethyl (C))CDM(Oxidation (M))LDL_ REV__ENSG00000089820|ENST00000350060|ARHGAP4;REV__ENST00000404127.6_1_X:153173185-153186849:-|nuORF;REV__nc|ENSG00000089820|P98171-2|ARHGAP4 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108989.5 NaN 5685 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7989 42.305 NaN 77100 35 0 10133 0.261 + 7961 GEDWNNWW 8 30 553.7196934296371 NaN 0 553.7195434570312 PEAK HCD FTMS 0 0 0 7985 35624.27734375 0.692558264924098 -1 0.026336669921875 4 Unmodified _GEDWNNWW_ ENST00000460874.6_1_9:21802906-21815460:+|nuORF 0.6903765706972694 0.38822285293237185 1 T 1 8 5.4846 0 0 0.49615 0 0 131.92514305113576 869.4280489557249 1001.3531920068606 0 0 0 0 0 0 0 0 0 T 0.49615 - 1 + NaN NaN 105034.2 NaN 5686 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7990 42.309 NaN 74704 35 0 14493 0.261 + 22619 QVFGMYLV 8 37 478.7473018145598 955.4800506959197 2 478.74761962890625 MULTI HCD FTMS 0 0 0 7985 20451.71875 0.9372091997095454 4 -0.11552047729492188 5 Unmodified _QVFGMYLV_ ENSG00000111877|ENST00000619706|MCM9;ENST00000436788.2_1_6:119234457-119238897:-|nuORF;nc|ENSG00000111877|Q9NXL9-2|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9 10.183394434864962 0.5188676124868831 1 T{I|L} 2 7 20.701 0 0 2.1666 0 0 723.3375111310562 0 723.3375111310562 0 13.711375162600703 0 0 0 0.4247425010840047 0 0 0 T{I|L} 2.1666 - 14 NaN NaN 89285 NaN 5687 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7991 42.312 NaN 43641 35 0 5191.5 0.261 + 35096 YVAQIYKYF 9 28 597.8129592102639 1193.6113654873277 2 597.8131713867188 MULTI HCD FTMS 0 0 0 7985 3884.490234375 0.16569297439474664 19 -0.5512886047363281 6 Unmodified _YVAQIYKYF_ ENSG00000128487|ENST00000395527|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91816.2 NaN 5688 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7992 42.315 NaN 23388 35 0 3120.5 0.261 -1 FNPNTFLMSL 10 22 600.2893947696939 1198.5642366061877 2 600.7913208007812 MULTI HCD FTMS 0 0 0 7985 4867.44677734375 0.35644234140680386 -1 0.026336669921875 7 Oxidation (M) _FNPNTFLM(Oxidation (M))SL_ tr|U7T218|U7T218_FUSNUGlycine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glyQPE=3SV=1 2.735195868890462 0.4608258780945842 1 Q{I|L} 2 -1 20.969 0 0 1.7495 0 0 939.4300404279312 0 939.4300404279312 0 20.969100130080562 0 0 0 0 0 0 0 Q{I|L} 1.7495 - 1 NaN NaN 102662.8 NaN 5689 2301 7985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7994 42.32 NaN 2653800 35 0 358230 0.327 + 1926 DADLREQAL 9 99 515.7618297558192 1029.5091065784384 2 515.7617797851562 MULTI HCD FTMS 0 0 0 7993 2015305 0.9226029259025061 1 -0.0297393798828125 1 Unmodified _DADLREQAL_ ENSG00000196878|ENST00000356082|LAMB3 189.73149822037072 4.1025052375754644E-13 1 DAD{I|L}REQA{I|L} 9 0 + 107.1 0 0 10.403 10.403 90.456 0 0 0 2.887503096606139 2.887503096606139 2.887503096606139 2.887503096606139 0 3.079689690656103 1.5228787452803376 1.1619543704721593 1.3411290632962718 + + DAD{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}RAADA{I|L};{[DA]|[EG]}D{I|L}RE[AG]A{I|L};DAD{I|L}RE[AG]A{I|L};{[DA]|[EG]}D{I|L}REQ{I|L}A;{[DA]|[EG]}D{I|L}RAAD{I|L}A;{[DA]|[EG]}{I|L}DREQA{I|L};{[DA]|[EG]}D{I|L}RAAAD{I|L};{[DA]|[EG]}{I|L}DRAADA{I|L} 10.403;10.122;10.023;9.2279;9.2116;8.6888;8.5894;8.4931;8.4116;8.3936 +;+;-;-;-;-;-;-;-;- + 10896 + NaN NaN 496769.1 NaN 5690 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7995 42.325 NaN 209590 35 0 53977 0.261 -1 RADQFEYVM 9 26 587.763538542368 1173.512524151536 2 587.7634887695312 MULTI HCD FTMS 0 0 0 7993 133249.71875 0.23164188046232426 -4 0.1087493896484375 2 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 29.84058131909904 0.11198220037953927 1 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5 -1 58.003 0 0 4.9427 0 0 470.22627455879064 0 470.22627455879064 0 51.01342204748164 0 0 0 2.305462187404089 0 0 0 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 4.9427 + + 42 NaN NaN 115436 NaN 5691 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7996 42.328 NaN 305530 35 0 38494 0.261 + -1 YCDYFPVI 8 32 538.7411305211572 1075.4677081091143 2 538.7409057617188 MULTI HCD FTMS 0 0 0 7993 92601.5859375 0.7093504672178489 -2 0.05266571044921875 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))DYFPVI_ REV__ENSG00000137944|ENST00000260508|KYAT3;REV__nc|ENSG00000137944|Q6YP21-3|KYAT3 5.230669730166228 0.5342319408533849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 122010.2 NaN 5692 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7997 42.332 NaN 70318 35 0 7829.8 0.261 -1 MPSSREDFL 9 39 549.2503387539983 1096.4861245747966 2 549.2496337890625 MULTI HCD FTMS 0 0 0 7993 28782.876953125 0.7249915899628975 -5 0.141754150390625 4 Oxidation (M) _M(Oxidation (M))PSSREDFL_ ENSG00000171940|ENST00000371471|ZNF217 12.240655878213236 0.2545997876781172 1 SPE 3 -1 33.188 0 0 3.0267 0 0 765.3663807599625 0 765.3663807599625 0 27.703037561203843 0 0 0 0.4247425010840047 0 0.4247425010840047 0 SPE 3.0267 - 9 NaN NaN 95995.2 NaN 5693 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7998 42.335 NaN 218290 35 0 17163 0.263 + 28485 TPPRKQRLTL 10 62 403.91887218604177 1208.7347871583254 3 403.9188537597656 MULTI HCD FTMS 0 0 0 7993 14283.01953125 0.6531915556868366 1 -0.0297393798828125 5 Unmodified _TPPRKQRLTL_ ENST00000370114.7_1_1:101360984-101361197:-|nuORF 5.047519993296601 0.4485863789024576 1 TPA 3 8 29.741 0 0 2.4605 0 0 0 936.5739134123006 936.5739134123006 8.658650111567642 0 0 0 0 0.3252574989159953 1.0457574905606752 0 0 TPA 2.4605 - 34 + NaN NaN 124408.9 NaN 5694 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 7999 42.338 NaN 45551 35 0 4478.6 0.261 -1 KYVGAVQML 9 32 512.7781576689852 NaN 0 512.77880859375 PEAK HCD FTMS 0 0 0 7993 18835.078125 0.7612010349143894 2 -0.062774658203125 6 Oxidation (M) _KYVGAVQM(Oxidation (M))L_ ENSG00000048471|ENST00000566228|SNX29;nc|ENSG00000048471|Q8TEQ0-2|SNX29 24.020572477871973 0.16041128140741606 1 {M(Oxidation (M))|F}QVQ 4 -1 32.423 0 0 3.1677 0 0 131.09093772804846 387.20380579166255 518.294743519711 0 0 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}QVQ 3.1677 - 21 + NaN NaN 88881.2 NaN 5695 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8000 42.342 NaN 51446 35 0 6220.4 0.261 + 32745 WQRSLDEIT 9 31 574.2905849978771 1146.566617062554 2 574.29052734375 MULTI HCD FTMS 0 0 0 7993 10262.3818359375 0.38377553167627126 12 -0.3499603271484375 7 Unmodified _WQRSLDEIT_ REV__ENSG00000144115|ENST00000674334|THNSL2;REV__ENST00000343544.8_1_2:88485199-88485639:+|nuORF;REV__nc|ENSG00000144115|Q86YJ6-4|THNSL2 3.2813086475875832 0.32614229037259 1 {I|L}T 2 -1 20.969 0 0 1.8289 0 0 914.4275990216812 0 914.4275990216812 0 19.54911684825456 0 0 0 0 0 0 0 {I|L}T 1.8289 + + 2 NaN NaN 88914.8 NaN 5696 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8001 42.345 NaN 108720 35 0 16440 0.261 + 21406 PVNIVNTQT 9 45 493.2685927722248 984.5226326112496 2 493.76812744140625 MULTI HCD FTMS 0 0 0 7993 21372.921875 0.5618574068108627 -15 0.42186737060546875 8 Unmodified _PVNIVNTQT_ REV__PPP1R13B|p.R104T|1|0.27|ENSG00000088808|chr14:103778788-103778788|C/G|missense_variant 1.844237919475145 0.33703635659052655 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.8241 0 0 718.429414693084 0 718.429414693084 0 10.969100130080562 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.8241 - 26 + NaN NaN 121462.9 NaN 5697 2302 7993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8003 42.35 NaN 1405500 35 0 504950 0.327 + 22984 RADESTYVL 9 62 527.2643534515837 1052.5141539699673 2 527.263916015625 MULTI HCD FTMS 0 0 0 8002 828312.0625 0.8589651463997429 2 -0.059452056884765625 1 Unmodified _RADESTYVL_ ENSG00000115267|ENST00000649979|IFIH1 34.93206674587334 0.08860942999206235 1 ESTYV{I|L} 6 3 65.394 0 0 6.2131 0 0 342.1640797345719 0 342.1640797345719 0 46.18562527100117 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + ESTYV{I|L} 6.2131 + + 103 NaN NaN 314257.9 NaN 5698 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8004 42.355 NaN 939240 35 0 94097 0.261 + 24121 RYATQLQQI 9 89 560.8090483662676 1119.603543799335 2 560.8087768554688 MULTI HCD FTMS 0 0 0 8002 432178.375 0.5563118553001911 3 -0.08921051025390625 2 Unmodified _RYATQLQQI_ CON__A2A4G1;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15 103.82355648334675 0.003950725192926219 1 [YR]ATQ{I|L}QQ{I|L} 9 0 + 82.66 0 0 7.383 7.383 86.383 0 0 0 1.7075429768260335 16.478174818886373 1.7075429768260335 1.7075429768260335 0 2.2104093769761874 0 0.2614393726401688 1.110924374808178 + + [YR]ATQ{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}QQ{I|L};[YR]AT[AG]{I|L}QQ{I|L};[YR]ATQ{I|L}Q[AG]{I|L};[YR]ATQ{I|L}[AG]Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}[AG]Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RT[AG]{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}Q[AG]{I|L};[YR]AT[AG]{I|L}Q[AG]{I|L};[YR]AT[AG]{I|L}[AG]Q{I|L} 7.383;7.2305;6.5606;6.5606;6.5606;6.408;6.408;6.408;5.742;5.742 +;-;-;-;-;-;-;-;-;- + 1331 NaN NaN 239589.7 NaN 5699 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8005 42.358 NaN 113970 35 0 9106.2 0.261 + 914 AYATHPFKF 9 42 541.2768411675763 1080.5391294019526 2 541.2767333984375 MULTI HCD FTMS 0 0 0 8002 56276.66796875 0.10328763463185428 12 -0.34659576416015625 3 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 32.78568957990786 0.09846250359632436 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ][YV]K{M(Oxidation (M))|F} 8 5 + 45.137 0 0 4.1773 4.1773 87.282 0 0 0 21.553331073971762 15.26925019195367 15.26925019195367 15.26925019195367 0 1 2 0.3252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ][YV]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}P]{[ET]|[MV]}T{[WT]|[RM]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]AYA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT][HV]{[ES]|[DT]|[{I|L}C]} 4.1773;2.7641;1.7479;0.43044 -;-;-;- 63 NaN NaN 104928.5 NaN 5700 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8006 42.361 NaN 85703 35 0 15725 0.261 + 3044 EAFPHDSQL 9 33 522.2431934826263 1042.4718340320526 2 522.2429809570312 MULTI HCD FTMS 0 0 0 8002 47735.87109375 0.14797392747208973 13 -0.3730812072753906 4 Unmodified _EAFPHDSQL_ ENSG00000071894|ENST00000616140|CPSF1 6.723162845929126 0.3000504726104499 1 W 1 9 3.4949 0 0 0.33525 0 0 713.3346097662308 140.03890405826408 853.3735138244948 0 0 0 0 0 0 0 0 0 W 0.33525 - 6 + NaN NaN 95486.5 NaN 5701 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8007 42.365 NaN 138950 35 0 15762 0.261 + 17058 LYKPDSNEF 9 45 556.7666996481931 1111.5188463631862 2 556.7666015625 MULTI HCD FTMS 0 0 0 8002 48943.4453125 0.24041073774796734 -3 0.08240509033203125 5 Unmodified _LYKPDSNEF_ ENSG00000181433|ENST00000370709|SAGE1 45.69961567697781 0.039180348357221985 1 [Y{I|L}]K[DP][NS]E{M(Oxidation (M))|F} 9 0 + 57.61 0 0 5.183 5.183 91.609 0 0 0 13.657424843733637 35.62014972766029 13.657424843733637 57.60984977102048 0 1.5 2 0 0.4247425010840047 + + [Y{I|L}]K[DP][NS]E{M(Oxidation (M))|F} 5.183 + + 37 NaN NaN 96390.8 NaN 5702 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8008 42.368 NaN 115110 35 0 15887 0.261 -1 MTTLLLEM 8 42 492.243401614126 982.472250295052 2 493.2362365722656 MULTI HCD FTMS 0 0 0 8002 6989.2763671875 0.5773278463268188 3 -0.08921051025390625 6 2 Oxidation (M) _M(Oxidation (M))TTLLLEM(Oxidation (M))_ ENSG00000182372|ENST00000331222|CLN8 9.347437153973935 0.5250182646323369 1 T[VP][KQ]T{M(Oxidation (M))|F} 7 -1 26.611 0 0 2.7085 0 0 163.0619630697259 0 163.0619630697259 0 26.610688275226053 0 0 0 0 0 0.7614393726401688 0 T[VP][KQ]T{M(Oxidation (M))|F} 2.7085 - 36 + NaN NaN 116931.7 NaN 5703 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8009 42.371 NaN 75618 35 0 12920 0.261 -1 DMHTEVTTL 9 23 531.7421757598927 1061.4697985865853 2 531.7421875 MULTI HCD FTMS 0 0 0 8002 23152.5859375 0.03796800927283497 40 -1.1615943908691406 7 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 19.256988751693697 0.19398022840297344 1 VTT{I|L} 4 -1 46.186 0 0 4.3511 0 0 629.2133656232437 0 629.2133656232437 0 39.195925227640984 0 0 0 1 0 0.4247425010840047 0 VTT{I|L} 4.3511 + + 23 NaN NaN 101217.9 NaN 5704 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8010 42.375 NaN 61179 35 0 12069 0.261 -1 MADTFLEHM 9 32 563.73142954525 1125.4483061572998 2 563.7310180664062 MULTI HCD FTMS 0 0 0 8002 18247.494140625 0.6810238541242517 1 -0.0330352783203125 8 2 Oxidation (M) _M(Oxidation (M))ADTFLEHM(Oxidation (M))_ ENSG00000067225|ENST00000335181|PKM;ENST00000564276.1_1_15:72502555-72511438:-|nuORF;nc|ENSG00000067225|P14618-2|PKM 7.289230182591677 0.29575926068275815 1 D{[CP]|[EA]} 3 -1 10.458 0 0 0.92919 0 0 792.3436756818375 0 792.3436756818375 0 10.45757490560675 0 0 0 0 0 0 0 D{[CP]|[EA]} 0.92919 - 9 NaN NaN 93178.7 NaN 5705 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8011 42.378 NaN 113290 35 0 15078 0.261 + 8040 GGVSVREAAF 10 39 496.7616296274147 991.5087063216295 2 496.7613220214844 MULTI HCD FTMS 0 0 0 8002 52384.80078125 0.9404599256552919 -2 0.05606842041015625 9 Unmodified _GGVSVREAAF_ REV__ENST00000576393.5_1_17:79651084-79657315:+|nuORF 21.536976647645854 0.3096624038397699 1 AA{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1551 0 0 684.3557349854951 0 684.3557349854951 0 25 0 0 0 1.5 0 0 0 AA{M(Oxidation (M))|F} 4.1551 + + 28 + NaN NaN 98372.8 NaN 5706 2303 8002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8013 42.383 NaN 289930 35 0 130120 0.327 + -1 CPGMPGTVL 9 39 474.2195817069027 946.4246104806055 2 474.2190856933594 MULTI HCD FTMS 0 0 0 8012 259765.421875 0.8507334428208941 2 -0.05617523193359375 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PGM(Oxidation (M))PGTVL_ REV__ENSG00000102313|ENST00000218436|ITIH6 16.942295170755138 0.21397866736869717 1 TV{I|L} 3 -1 36.682 0 0 3.8759 0 0 615.214159080275 0 615.214159080275 0 20.228787452803374 0 0 0 0.9247425010840047 0 0.4247425010840047 0 TV{I|L} 3.8759 + + 18 NaN NaN 114330.4 NaN 5707 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8014 42.388 NaN 273840 35 0 31488 0.261 + 19238 NKNEYIDCTIF 11 59 453.87994203616904 1358.617996708707 3 453.8800354003906 MULTI HCD FTMS 0 0 0 8012 79302.9140625 0.2438612192747452 26 -0.752685546875 2 Unmodified _NKNEYIDCTIF_ REV__tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1 7.0370850670814 0.388058401935362 1 R{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.5434 0 0 1037.4381699038227 0 1037.4381699038227 0 2.7435003003541425 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.5434 - 48 + NaN NaN 127483.8 NaN 5708 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8015 42.391 NaN 141100 35 0 54729 0.261 + -1 LVMAAVELCL 10 20 567.7976119205427 NaN 0 567.8077392578125 PEAK HCD FTMS 0 0 0 8012 3385.16162109375 0.6827668994092374 -1 0.0330352783203125 3 Carbamidomethyl (C),Oxidation (M) _LVM(Oxidation (M))AAVELC(Carbamidomethyl (C))L_ REV__ENST00000415670.1_3_22:37959664-37959718:+|nuORF 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105508.3 NaN 5709 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8016 42.394 NaN 93687 35 0 10213 0.261 + -1 LEPLYKQCK 9 39 589.8153106192221 1177.6160683052442 2 589.8154907226562 MULTI HCD FTMS 0 0 0 8012 41102.75 0.08435614948664329 19 -0.54791259765625 4 Carbamidomethyl (C) _LEPLYKQC(Carbamidomethyl (C))K_ REV__ENSG00000068097|ENST00000184956|HEATR6 6.723162845929126 0.3000504726104499 1 K 1 -1 11.99 0 0 1.0181 0 0 488.2309155517418 558.2685874080003 1046.4995029597421 0 0 0 0 0 0.5 0 0 0 K 1.0181 + + 30 + NaN NaN 98699.8 NaN 5710 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8017 42.398 NaN 146790 35 0 16572 0.262 + 2451 DQARLPPAF 9 53 507.7719515397092 1013.5293501462185 2 507.7712097167969 MULTI HCD FTMS 0 0 0 8012 18186.791015625 0.6226455631163341 -1 0.0330352783203125 5 Unmodified _DQARLPPAF_ REV__ENSG00000104881|ENST00000360957|PPP1R13L;REV__ENST00000585905.1_1_19:45898523-45909561:-|nuORF 5.731851221503515 0.3075653528928475 1 PA{M(Oxidation (M))|F} 3 -1 24.208 0 0 2.3885 0 0 680.3605843682907 0 680.3605843682907 0 17.129843661361406 0 0 0 0.5 0 0 0 PA{M(Oxidation (M))|F} 2.3885 + + 67 NaN NaN 106251.8 NaN 5711 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8018 42.401 NaN 204070 35 0 29221 0.262 + 3487 EGVKMNFIDR 10 56 403.54127395685987 1207.6019924707796 3 403.52813720703125 MULTI HCD FTMS 0 0 0 8012 2052.185546875 0.11399335016459683 3 -0.08922576904296875 6 Unmodified _EGVKMNFIDR_ ENSG00000123552|ENST00000500704|USP45 3.5964929083625545 0.45626689593999237 1 {[DA]|[EG]}V 3 7 21.461 0 0 1.7771 0 0 0 919.4462972405639 919.4462972405639 15.976322093298556 0 0 0 0 0 1.5228787452803376 0 0 + {[DA]|[EG]}V 1.7771 + + 19 NaN NaN 109478.1 NaN 5712 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8019 42.404 NaN 83908 35 0 12436 0.261 + 35403 YYEEQHPEL 9 38 604.2670896750219 1206.5196264168437 2 604.2679443359375 MULTI HCD FTMS 0 0 0 8012 19084.36328125 0.008294194611614151 55 -1.5468559265136719 7 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 27.628801355627647 0.12213550946336599 1 YYE 3 6 37.007 0 0 3.0673 0 0 0 748.3237398736936 748.3237398736936 25.017346757967545 0 0 0 0 0.805462187404089 2 0 0 + YYE 3.0673 + + 41 + NaN NaN 91636.1 NaN 5713 2304 8012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8021 42.41 NaN 281850 35 0 37029 0.326 -1 RYLSPKYIKMF 11 62 487.93555228524644 1460.7848274559394 3 487.9350891113281 MULTI HCD FTMS 0 0 0 8020 79880.1796875 0.2335334211615433 12 -0.34336090087890625 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 23.339653216869817 0.25372324806181495 1 [Y{I|L}]RS[KP]Y{I|L}K 9 -1 43.967 0 0 3.0098 0 0 0 309.0916072456461 309.0916072456461 36.97707363045389 0 0 0 0 1.7302046884880937 1.2218487496163564 0.8494850021680094 0 [Y{I|L}]RS[KP]Y{I|L}K 3.0098 - 321 NaN NaN 122650.5 NaN 5714 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8022 42.414 NaN 255570 35 0 90653 0.261 -1 VPCLVSIPG 9 39 471.2599468143941 940.5053406955882 2 471.2594909667969 MULTI HCD FTMS 0 0 0 8020 90669.46875 0.09978393959718203 -6 0.17819595336914062 2 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))LVSIPG_ ENSG00000037280|ENST00000261937|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;nc|ENSG00000037280|P35916-3|FLT4 23.1484247019978 0.1603590852062899 1 VP 2 -1 42.959 0 0 4.5676 0 0 0 741.3607620790748 741.3607620790748 26.264100213633764 0 0 0 0 0.5 1.6989700043360187 0 0 VP 4.5676 + + 8 + NaN NaN 117124.6 NaN 5715 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8023 42.418 NaN 187540 35 0 46007 0.261 + 31952 VYPEKLATKF 10 40 598.3399272325928 1194.6653015319855 2 598.3396606445312 MULTI HCD FTMS 0 0 0 8020 62573.87890625 0.7222985351495129 -1 0.026416778564453125 3 Unmodified _VYPEKLATKF_ ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS 8.155526934196011 0.43213520406898465 1 VY 2 8 40.445 0 0 3.3855 0 0 0 929.5098407832048 929.5098407832048 25.428418131619992 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.3855 + + 14 + NaN NaN 108919.9 NaN 5716 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8024 42.421 NaN 107430 35 0 33612 0.261 -1 RYKLYQEMF 9 30 647.3186501761008 1292.6227474190016 2 647.3182983398438 MULTI HCD FTMS 0 0 0 8020 49884.3046875 0.5435400894579786 -2 0.059452056884765625 4 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 17.11289562659939 0.2125047172822487 1 {I|L}YQE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 32.893 0 0 2.5446 0 0 447.2599049298844 0 447.2599049298844 0 32.89258754269092 0 0 0 0.9247425010840047 0 0 0 {I|L}YQE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 2.5446 + + 26 NaN NaN 108900.4 NaN 5717 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8025 42.424 NaN 117880 35 0 17438 0.263 -1 0 48 523.7589697932202 1045.5033866532403 2 523.7586059570312 MULTI HCD FTMS 0 0 0 8020 24535.203125 0.04210527755295454 14 -0.4061126708984375 5 NaN NaN 1 E{I|L} 2 -1 16.454 0 0 1.5738 0 0 785.3604603498062 0 785.3604603498062 0 9.442015340991894 0 0 0 0 0 0 0 E{I|L} 1.5738 - 17 NaN NaN 112158.6 NaN 5718 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8026 42.428 NaN 58350 35 0 7305.2 0.261 -1 YYRGNYMTF 9 32 615.7660414696045 1229.5175300060089 2 615.7652587890625 MULTI HCD FTMS 0 0 0 8020 18266.47265625 0.6011112200185428 1 -0.029758453369140625 6 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ ENSG00000204574|ENST00000326195|ABCF1;nc|ENSG00000204574|Q8NE71-2|ABCF1 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 3 -1 15.458 0 0 1.2572 0 0 816.3574085919937 0 816.3574085919937 0 9.973024840566469 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 1.2572 + + 6 NaN NaN 87837.9 NaN 5719 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8027 42.431 NaN 75732 35 0 8841.6 0.263 + 19272 NLPDNTAVI 9 38 478.7554341624108 NaN 0 478.75537109375 PEAK HCD FTMS 0 0 0 8020 20184.91796875 0.028495877892514093 32 -0.9341697692871094 7 Unmodified _NLPDNTAVI_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 8.745405648335112 0.25286782695573473 1 V 1 -1 11.99 0 0 1.2548 0 0 131.09456650183728 722.3132478116917 853.4078143135289 0 0 0 0 0 0.5 0 0 0 V 1.2548 + + 8 + NaN NaN 96232.8 NaN 5720 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8028 42.434 NaN 59887 35 0 9011.4 0.261 -1 CRPCHAFCRG 10 32 603.7584320532491 NaN 0 603.7586059570312 PEAK HCD FTMS 0 0 0 8020 30689.005859375 1 0 0 8 Carbamidomethyl (C) _CRPCHAFC(Carbamidomethyl (C))RG_ ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8 3.2813086475875832 0.33737594360511275 1 C 1 -1 10.485 0 0 0.86972 0 0 356.17340599927303 743.3123335002371 1099.4857394995101 0 0 0 0 0 0.5 0 0 0 C 0.86972 + + 2 + NaN NaN 91598.1 NaN 5721 2305 8020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8030 42.439 NaN 401810 35 0 37008 0.327 + 12319 KMPKFKMPSF 10 77 419.5555857130238 1255.6449277392715 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8029 205070.921875 0.7693752793296744 -4 0.11894989013671875 1 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 44.94466952835103 0.1024974934706924 1 KMPK{M(Oxidation (M))|F} 5 5 35.348 0 0 2.8151 0 0 0 621.2688692682249 621.2688692682249 13.358317385287876 0 0 0 0 1.3129529932484498 0 0 0 + KMPK{M(Oxidation (M))|F} 2.8151 + + 56 + NaN NaN 154844.9 NaN 5722 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8031 42.444 NaN 78612 35 0 8868.6 0.261 + -1 EQDSGEEGM 9 43 499.17434555814896 996.3341381830979 2 499.1747131347656 MULTI HCD FTMS 0 0 0 8029 56378.1796875 0.7678686993042114 -1 0.029758453369140625 2 Oxidation (M) _EQDSGEEGM(Oxidation (M))_ REV__ENST00000487138.5_1_2:95944309-95944534:+|nuORF 7.289230182591677 0.29575926068275815 1 VNDD 4 -1 21.402 0 0 2.1481 0 0 0 550.1483248346311 550.1483248346311 1.6701753360414529 0 0 0 0 0 0 0 0 VNDD 2.1481 - 20 + NaN NaN 103422.5 NaN 5723 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8032 42.447 NaN 241400 35 0 37125 0.261 + 13063 KYLDNPNAL 9 55 524.2770955023402 1046.5396380714803 2 524.2765502929688 MULTI HCD FTMS 0 0 0 8029 101682.8515625 0.48843475772963824 -3 0.08921051025390625 3 Unmodified _KYLDNPNAL_ ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;nc|ENSG00000197256|Q63ZY3-3|KANK2 79.59630418116434 0.005983006570063981 1 [YK]{I|L}DN[NP]A{I|L} 9 0 + 56.761 0 0 5.4237 5.4237 86.966 0 0 0 5.6424927368725974 40.563113202512895 5.6424927368725974 9.208187539523749 0 1.610924374808178 0 0.6505149978319906 0.8494850021680094 + + [YK]{I|L}DN[NP]A{I|L};[YK]{I|L}DGG[NP]A{I|L} 5.4237;4.5438 +;- + 168 NaN NaN 122410.8 NaN 5724 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8033 42.451 NaN 85384 35 0 13417 0.261 + -1 FDDNFREVM 9 19 594.7532943342871 1187.4920357353742 2 594.7529907226562 MULTI HCD FTMS 0 0 0 8029 28496.451171875 0.6637743181066901 1 -0.033050537109375 4 Oxidation (M) _FDDNFREVM(Oxidation (M))_ REV__ENSG00000162627|ENST00000306121|SNX7;REV__nc|ENSG00000162627|Q9UNH6-2|SNX7;REV__nc|ENSG00000162627|Q9UNH6|SNX7 6.723162845929126 0.3000504726104499 1 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1869 0 0 923.379764198207 0 923.379764198207 0 25.969100130080562 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.1869 + + 3 NaN NaN 96078.2 NaN 5725 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8034 42.454 NaN 106740 35 0 17896 0.261 -1 HPFFKDMSL 9 33 569.2733363548385 1136.532119776477 2 569.2728881835938 MULTI HCD FTMS 0 0 0 8029 45410.76171875 0.14541385695399944 24 -0.6965103149414062 5 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 8.155526934196011 0.2891920862272901 1 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3305147760374 752.3305147760374 28.723637474483468 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 16 + NaN NaN 111326.4 NaN 5726 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8035 42.457 NaN 100290 35 0 19608 0.261 + 7734 FYLWLHNMFSL 11 32 490.91258240073967 1469.715917802419 3 490.9121398925781 MULTI HCD FTMS 0 0 0 8029 19884.205078125 0.5992726940094822 1 -0.033050537109375 6 Unmodified _FYLWLHNMFSL_ REV__ENST00000568067.1_1_15:42503908-42510186:-|nuORF 2.2527281973983926 0.4090409658946738 1 S{I|L} 2 -1 30.217 0 0 2.0559 0 0 1251.5902676358362 0 1251.5902676358362 0 13.226825097560422 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 2.0559 + + 3 NaN NaN 111741.9 NaN 5727 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8036 42.461 NaN 61119 35 0 8262.9 0.261 -1 NFNLEKVCR 9 29 590.3030395507812 NaN 0 590.31640625 PEAK HCD FTMS 0 0 0 8029 7595.56982421875 1 0 0 7 Carbamidomethyl (C) _NFNLEKVC(Carbamidomethyl (C))R_ ENST00000462207.1_1_3:52620428-52643468:-|nuORF 6.2057823575117 0.2651744870083793 1 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}KE 5 -1 13.015 0 0 1.1043 0 0 114.05733643537413 429.2275484674438 543.2848849028179 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}KE 1.1043 - 14 + NaN NaN 94419.5 NaN 5728 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8037 42.464 NaN 98211 35 0 9343.5 0.261 -1 HYMSINDSF 9 38 565.2346759331809 1128.4547989331618 2 565.2347412109375 MULTI HCD FTMS 0 0 0 8029 28583.173828125 0.44506279227936635 -9 0.26070404052734375 8 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 20.41453444215458 0.18397929046831515 1 TNDS{M(Oxidation (M))|F} 5 -1 51.766 0 0 4.5873 0 0 546.21879775215 0 546.21879775215 0 51.76599703664159 0 0 0 1.3807196863200843 0 0 0 TNDS{M(Oxidation (M))|F} 4.5873 - 36 NaN NaN 89004.8 NaN 5729 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8038 42.467 NaN 45959 35 0 5727.7 0.261 + 33056 YDEPDRGL 8 25 482.72206866953013 963.4295844058603 2 482.7232666015625 MULTI HCD FTMS 0 0 0 8029 15104.0791015625 0.02004935867882865 26 -0.75592041015625 9 Unmodified _YDEPDRGL_ REV__ENSG00000103404|ENST00000219689|USP31 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 95209.8 NaN 5730 2306 8029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8040 42.472 NaN 707400 35 0 209490 0.327 + 22987 RADQFEYVM 9 34 587.763538542368 1173.512524151536 2 587.763427734375 MULTI HCD FTMS 0 0 0 8039 485221.4375 0.8435110203422636 1 -0.036350250244140625 1 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 67.83816525789305 0.009787749748478139 1 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 3 82.696 0 0 7.0469 0 0 342.16539199043126 0 342.16539199043126 0 77.21130963036558 0 0 0 2.9247425010840047 0 0.4247425010840047 0.805462187404089 + Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 7.0469 + + 97 NaN NaN 202140 NaN 5731 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8041 42.477 NaN 535590 35 0 80254 0.261 + 1927 DADLREQAL 9 78 515.7618297558192 1029.5091065784384 2 515.76171875 MULTI HCD FTMS 0 0 0 8039 339648.75 0.15549057364971 6 -0.1682891845703125 2 Unmodified _DADLREQAL_ ENSG00000196878|ENST00000356082|LAMB3 125.0377797344192 0.0009059125702818869 1 {[DA]|[EG]}D{I|L}REQA{I|L} 9 0 + 97.608 0 0 9.481 9.481 90.905 0 0 0 8.764100213633768 8.764100213633768 8.764100213633768 5.0565842292838425 0 2.610924374808178 1.5228787452803376 0.9392404878284264 0.3054621874040891 + + {[DA]|[EG]}D{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}RAADA{I|L};{[DA]|[EG]}D{I|L}RE[AG]A{I|L};{[DA]|[EG]}{I|L}DREQA{I|L};{[DA]|[EG]}{I|L}DRAADA{I|L};{[DA]|[EG]}{I|L}DRE[AG]A{I|L};{[DA]|[EG]}[RV]EEQA{I|L};{[DA]|[EG]}[RV]EAADA{I|L};{NN|[MP]|[D{I|L}]|[EV]}ADREQA{I|L};{[DA]|[EG]}[RV]EE[AG]A{I|L} 9.481;8.9898;8.5866;8.3164;7.8252;7.4219;6.6233;6.1321;5.7456;5.7289 +;-;-;-;-;-;-;-;-;- + 1794 NaN NaN 167671.5 NaN 5732 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8042 42.48 NaN 856940 35 0 185950 0.261 -1 0 56 431.88111051559815 1292.6215021469945 3 431.881103515625 MULTI HCD FTMS 0 0 0 8039 279416.75 1 0 0 3 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 29.222 0 0 2.2607 0 0 980.5059298125713 0 980.5059298125713 0 23.737125054200234 0 0 0 0.8252574989159953 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2607 - 19 NaN NaN 213751.1 NaN 5733 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8043 42.484 NaN 1243000 35 0 180820 0.261 + 5067 FDSYREKL 8 89 529.2688686697817 1056.5231844063633 2 529.2509155273438 MULTI HCD FTMS 0 0 0 8039 66389.8125 1 0 0 4 Unmodified _FDSYREKL_ REV__ENSG00000091127|ENST00000469408|PUS7;REV__nc|ENSG00000091127|Q96PZ0-2|PUS7 18.13498045792455 0.4603629008820478 1 DSDVGVYR 8 -1 52.376 0 0 4.9574 0 0 147.10369955636446 0 147.10369955636446 0 -5.848396689760094 -5.848396689760094 0 0 0 0 1.079689690656103 0 DSDVGVYR 4.9574 - 2012 + NaN NaN 276568.4 NaN 5734 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8044 42.487 NaN 423820 35 0 34327 0.261 + 1983 DASAEVERL 9 51 495.2485578600426 988.4825627868852 2 495.2481689453125 MULTI HCD FTMS 0 0 0 8039 183582.765625 0.6498389962124564 -2 0.06280899047851562 5 Unmodified _DASAEVERL_ ENSG00000130303|ENST00000252593|BST2;nc|ENSG00000130303|Q10589-2|BST2 117.76058876431921 0.001675465467887476 1 {[DA]|[EG]}SAEVER{I|L} 9 0 + 115.54 0 0 11.689 11.689 97.887 0 0 0 19.948500216800937 16.478174818886373 16.478174818886373 25 0 2.9247425010840047 1.6989700043360187 2.3723637474483468 0 + + {[DA]|[EG]}SAEVER{I|L};{[SA]|[TG]}DAEVER{I|L};{[CP]|[EA]}[SG]EVER{I|L} 11.689;9.1599;6.6766 +;-;- + 251 NaN NaN 163506.2 NaN 5735 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8045 42.49 NaN 615370 35 0 72454 0.261 + 22290 QPEHGPNTDLL 11 73 610.7990586562001 1219.5835643792002 2 610.7996215820312 MULTI HCD FTMS 0 0 0 8039 218211.34375 0.5693188602017526 -5 0.15200042724609375 6 Unmodified _QPEHGPNTDLL_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 21.590151480376914 0.2689667140516965 1 {NN|[MP]|[D{I|L}]|[EV]}[MN]G[DP]TD{I|L} 10 5 34.2 0 0 2.8042 0 0 0 145.094367315082 145.094367315082 12.807262395435966 0 0 0 0 0 1.3010299956639813 0.7302046884880937 0.3252574989159953 {NN|[MP]|[D{I|L}]|[EV]}[MN]G[DP]TD{I|L} 2.8042 - 639 NaN NaN 177019.9 NaN 5736 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8046 42.494 NaN 295570 35 0 33023 0.261 + 2387 DPGSEETQTL 10 45 538.7411305211572 1075.4677081091143 2 538.7406616210938 MULTI HCD FTMS 0 0 0 8039 109439.5078125 0.8383330070748909 3 -0.0924224853515625 7 Unmodified _DPGSEETQTL_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 7.608950283845883 0.4350283211712914 1 TQT{I|L} 4 6 25.578 0 0 2.3783 0 0 614.2191029279312 0 614.2191029279312 0 9.035984316004217 0 0 0 0.3807196863200844 0 0 0 + TQT{I|L} 2.3783 + + 29 NaN NaN 125002.8 NaN 5737 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8047 42.497 NaN 365540 35 0 37895 0.261 + 3916 EPSEVFINR 9 58 545.7801606701761 1089.545768407152 2 545.7796020507812 MULTI HCD FTMS 0 0 0 8039 109137.640625 0.6302056204690608 -3 0.08922576904296875 8 Unmodified _EPSEVFINR_ ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000121390|Q8WXF1-2|PSPC1 34.40172386719151 0.0910440009062557 1 [EP]SEV{M(Oxidation (M))|F}{I|L}NR 9 0 + 54.135 0 0 4.9686 4.9686 86.22 0 0 0 27.805168975722765 14.973024840566467 14.973024840566467 9.208187539523749 0 0 0 0 1.031234684152075 + + [EP]SEV{M(Oxidation (M))|F}{I|L}NR;[EP]SEV{M(Oxidation (M))|F}{I|L}GGR 4.9686;4.1234 +;- + 189 + NaN NaN 156902.8 NaN 5738 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8048 42.5 NaN 65952 35 0 12479 0.261 + 15367 LPDENREVL 9 21 542.785278519202 1083.556004105204 2 542.78515625 MULTI HCD FTMS 0 0 0 8039 40627.41015625 0.9251103551154545 2 -0.05608367919921875 9 Unmodified _LPDENREVL_ ENSG00000130052|ENST00000374599|STARD8;ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000130052|Q92502|STARD8;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1 4.897010918128616 0.31389406404703984 1 {I|L}P 2 7 20.969 0 0 1.9352 0 0 0 870.3963717096311 870.3963717096311 13.979400086720375 0 0 0 0 0 0 0 0 + {I|L}P 1.9352 + + 2 + NaN NaN 96699.3 NaN 5739 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8049 42.504 NaN 43620 35 0 5661.9 0.261 -1 FSCDVVWG 8 28 485.2108555901631 968.4071582471262 2 485.2100830078125 MULTI HCD FTMS 0 0 0 8039 16828.275390625 0.346414978759757 3 -0.0924224853515625 10 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))DVVWG_ ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-5|SZT2 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88123.7 NaN 5740 2307 8039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8051 42.509 NaN 354160 35 0 26842 0.327 + 24122 RYATQLQQI 9 80 560.8090483662676 1119.603543799335 2 560.8086547851562 MULTI HCD FTMS 0 0 0 8050 86634.9765625 0.11151891749644564 8 -0.21446990966796875 1 Unmodified _RYATQLQQI_ CON__A2A4G1;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15 42.312485326615175 0.05472917415473307 1 TQ{I|L}QQ{I|L} 6 3 52.185 0 0 4.661 0 0 390.20347792793126 0 390.20347792793126 0 34.22583750530693 0 0 0 1.8441876774005248 0 0 0 + TQ{I|L}QQ{I|L} 4.661 + + 635 NaN NaN 138361.8 NaN 5741 2308 8050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8052 42.513 NaN 135420 35 0 28986 0.261 -1 FPHSMEPQL 9 38 551.2551805866307 1100.4958082400613 2 551.2548828125 MULTI HCD FTMS 0 0 0 8050 54854.30859375 0.9089461729760568 -4 0.12557601928710938 2 Oxidation (M) _FPHSM(Oxidation (M))EPQL_ ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF 22.736283301280096 0.1639198954644489 1 EPQ{I|L} 4 -1 36.938 0 0 3.3565 0 0 615.2476673810562 0 615.2476673810562 0 30.344406447039063 0 0 0 0.5 0 0 0 EPQ{I|L} 3.3565 + + 32 NaN NaN 102585.9 NaN 5742 2308 8050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8053 42.517 NaN 187400 35 0 31628 0.261 -1 SAAAVDAGMAM 11 47 505.7177097630178 1009.4208665928356 2 505.7177429199219 MULTI HCD FTMS 0 0 0 8050 35102.28125 0.6084479775443553 -2 0.06940078735351562 3 Oxidation (M) _SAAAVDAGMAM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 8.745405648335112 0.3805662881914433 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.534 0 0 844.3747372977169 0 844.3747372977169 0 -0.9421249706470292 -0.9421249706470292 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.534 + + 14 + NaN NaN 112962.8 NaN 5743 2308 8050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8054 42.52 NaN 126480 35 0 15133 0.261 + 9898 IATTEALSM 9 38 476.7363433612673 951.4581337893346 2 476.7358093261719 MULTI HCD FTMS 0 0 0 8050 40461.61328125 0.8220470152565029 -1 0.036350250244140625 4 Oxidation (M) _IATTEALSM(Oxidation (M))_ ENSG00000157601|ENST00000398598|MX1;ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;nc|ENSG00000157601|P20591-2|MX1 54.773552608820026 0.024892918755467567 1 GA{I|L}S{M(Oxidation (M))|F} 5 5 56.013 0 0 5.8871 0 0 458.2345143048844 0 458.2345143048844 0 47.42992819099939 0 0 0 1.8807196863200843 0 0.4247425010840047 0 GA{I|L}S{M(Oxidation (M))|F} 5.8871 - 37 NaN NaN 105460 NaN 5744 2308 8050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8055 42.523 NaN 44881 35 0 6344.8 0.261 -1 0 31 482.72206866953013 963.4295844058603 2 482.72186279296875 MULTI HCD FTMS 0 0 0 8050 21682.744140625 0.028781967539595915 28 -0.8052864074707031 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87399.6 NaN 5745 2308 8050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8057 42.528 NaN 209100 35 0 24906 0.327 + 17059 LYKPDSNEF 9 61 556.7666996481931 1111.5188463631862 2 556.766357421875 MULTI HCD FTMS 0 0 0 8056 124355.5546875 0.6108358423603686 3 -0.08583450317382812 1 Unmodified _LYKPDSNEF_ ENSG00000181433|ENST00000370709|SAGE1 57.72198328787511 0.020768266150574023 1 {I|L}YK 3 6 56.682 0 0 5.0995 0 0 0 704.2537021950022 704.2537021950022 18.935078169319297 0 0 0 0 0.9247425010840047 2 0 0.4247425010840047 + {I|L}YK 5.0995 + + 87 + NaN NaN 114604.3 NaN 5746 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8058 42.533 NaN 167900 35 0 20681 0.262 -1 TIGVDFEMERF 11 52 453.87994203616904 1358.617996708707 3 453.87982177734375 MULTI HCD FTMS 0 0 0 8056 64029.43359375 0.19689435035561628 31 -0.9009437561035156 2 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 6.234356020891411 0.3915788988406848 1 WR[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 5 -1 23.724 0 0 1.7462 0 0 575.2806483748235 0 575.2806483748235 0 16.73393743112328 0 0 0 0.8494850021680094 0 0 0 WR[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 1.7462 - 83 + NaN NaN 107133 NaN 5747 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8059 42.536 NaN 101650 35 0 24704 0.261 -1 TVPCCPTGL 9 36 474.2195817069027 946.4246104806055 2 474.2193298339844 MULTI HCD FTMS 0 0 0 8056 46291.1875 0.1516039395462458 7 -0.19473648071289062 3 Carbamidomethyl (C) _TVPC(Carbamidomethyl (C))CPTGL_ ENSG00000143107|ENST00000370017|FNDC7 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F}G{I|L} 3 -1 26.198 0 0 2.7681 0 0 611.2956410138687 0 611.2956410138687 0 6.73393743112328 0 0 0 0 0 0 0 {M(Oxidation (M))|F}G{I|L} 2.7681 - 14 NaN NaN 99244.4 NaN 5748 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8060 42.54 NaN 193950 35 0 35444 0.261 + 11690 KAFESEPTL 9 41 511.26375837338026 1020.5129638135605 2 511.2633972167969 MULTI HCD FTMS 0 0 0 8056 102632.8359375 0.5628647405102878 -4 0.11889266967773438 4 Unmodified _KAFESEPTL_ ENSG00000197442|ENST00000359015|MAP3K5 57.72198328787511 0.020768266150574023 1 ESEPT{I|L} 6 3 49.882 0 0 4.888 0 0 346.20219618965 0 346.20219618965 0 28.7898501052333 0 0 0 1.579689690656103 0 0.805462187404089 0 + ESEPT{I|L} 4.888 + + 192 NaN NaN 126526.4 NaN 5749 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8061 42.543 NaN 54082 35 0 6490.2 0.261 + 10613 IPPERPEMLP 10 27 589.8153106192221 1177.6160683052442 2 589.8153076171875 MULTI HCD FTMS 0 0 0 8056 26752.58984375 0.05490497516624143 24 -0.6898117065429688 5 Unmodified _IPPERPEMLP_ ENSG00000147010|ENST00000397821|SH3KBP1;nc|ENSG00000147010|Q96B97-2|SH3KBP1;nc|ENSG00000147010|Q96B97-3|SH3KBP1 4.5288652416199255 0.4513317009562028 1 {I|L}[{M(Oxidation (M))|F}V]EK 5 8 27.218 0 0 2.3113 0 0 0 558.2680147760374 558.2680147760374 20.228787452803374 0 0 0 0 0.5 0 0 0 {I|L}[{M(Oxidation (M))|F}V]EK 2.3113 - 9 + NaN NaN 107627.2 NaN 5750 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8062 42.546 NaN 88720 35 0 13465 0.261 + 915 AYATHPFKF 9 44 541.2768411675763 1080.5391294019526 2 541.27734375 MULTI HCD FTMS 0 0 0 8056 32253.310546875 0.059196257981784565 18 -0.5215721130371094 6 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 17.11289562659939 0.2125047172822487 1 K{M(Oxidation (M))|F} 2 7 23.583 0 0 2.1826 0 0 787.3647938459 0 787.3647938459 0 12.373343961715547 0 0 0 0.5 0 0 0 + K{M(Oxidation (M))|F} 2.1826 + + 18 NaN NaN 94922.2 NaN 5751 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8063 42.55 NaN 139720 35 0 10167 0.261 + 2432 DPTDVAALR 9 51 479.25430999477356 956.4940670563471 2 479.2536315917969 MULTI HCD FTMS 0 0 0 8056 50303.4609375 0.8372205420624838 -2 0.05608367919921875 7 Unmodified _DPTDVAALR_ ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20 79.59630418116434 0.005983006570063981 1 [DP]TDVAA{I|L}R 9 0 + 67.655 0 0 7.0733 7.0733 92.504 0 0 0 1.4621783592954642 1.4621783592954642 1.4621783592954642 16.660583770278087 0 2.6791746928241125 0 0.5 0 + + [DP]TDVAA{I|L}R;{[ES]|[DT]|[{I|L}C]}PDVAA{I|L}R;{[C(Carbamidomethyl (C))G]|[NC]}[NP]VAA{I|L}R;[DP]TD[Q{I|L}]{I|L}R;[DP]TN{[QN]|[E{I|L}]|[KN]}{I|L}R;[DP]TDV[RV][VG];[DP]T{[RE]|[WV]}A{I|L}[VG];{[ES]|[DT]|[{I|L}C]}PD[Q{I|L}]{I|L}R;[DP]TGG{[QN]|[E{I|L}]|[KN]}{I|L}R;{[ES]|[DT]|[{I|L}C]}PN{[QN]|[E{I|L}]|[KN]}{I|L}R 7.0733;5.3314;4.3315;4.1815;3.5574;3.3972;3.2773;2.5925;2.3385;1.9684 +;-;-;-;-;-;-;-;-;- + 200 + NaN NaN 96957.2 NaN 5752 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8064 42.553 NaN 101280 35 0 23066 0.261 -1 YMPTSQPP 8 35 468.7094489970754 935.4043450609508 2 468.6933898925781 MULTI HCD FTMS 0 0 0 8056 4714.62939453125 0.48303318812997026 1 -0.03633880615234375 8 Oxidation (M) _YM(Oxidation (M))PTSQPP_ ENSG00000132471|ENST00000254806|WBP2;ENST00000587642.5_1_17:73842817-73843099:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2 2.302733041254933 0.5385759549224092 1 D{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 4 -1 10.177 0 0 1.088 0 0 427.2061801098102 0 427.2061801098102 0 0.5166096705585961 0 0 0 0 0 0 0 D{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 1.088 - 5 NaN NaN 92456.7 NaN 5753 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8065 42.556 NaN 74220 35 0 11265 0.261 -1 HTAGSQMTDV 10 29 531.7313376688256 NaN 0 531.7412109375 PEAK HCD FTMS 0 0 0 8056 7182.5859375 0.7318961636333892 -3 0.08913421630859375 9 Oxidation (M) _HTAGSQM(Oxidation (M))TDV_ ENSG00000283039|ENST00000634670|KLF18 2.9952420565917617 0.3376207769591857 1 TTVE 4 -1 19.46 0 0 1.8334 0 0 131.06526215230116 497.1425875299438 628.207849682245 0 0 0 0 0 0 0 0.3252574989159953 0 TTVE 1.8334 - 11 + NaN NaN 106771.7 NaN 5754 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8066 42.56 NaN 17940 35 0 4164 0.261 + 1796 CNDSNSFHDLD 11 15 633.7379559830484 1265.4613590328968 2 633.7373046875 MULTI HCD FTMS 0 0 0 8056 12291.689453125 0.7189056920090353 1 -0.03633880615234375 10 Unmodified _CNDSNSFHDLD_ REV__ENSG00000011132|ENST00000316757|APBA3;REV__ENST00000588984.5_1_19:3751026-3754498:-|nuORF 0.9622753412299311 0.4147004537482263 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88347.6 NaN 5755 2309 8056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8068 42.565 NaN 1482200 35 0 551670 0.327 + 30607 VPCKVEPGL 9 78 471.2599468143941 940.5053406955882 2 471.25958251953125 MULTI HCD FTMS 0 0 0 8067 787877.5625 0.8670782810390626 -1 0.03633880615234375 1 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 89.40071534611396 0.0045416704840156395 1 [VP]CKVEPAV 9 2 + 78.4 0 0 8.3359 8.3359 87.341 0 0 0 22.376430167995878 57.25318101209865 22.376430167995878 0.4845500650402812 0 2.079689690656103 1.5228787452803376 0.7302046884880937 0 [VP]CKVEPAV;[VP]CKEVPAV;[VP]CKVEPG{I|L};[VP]CKEVPG{I|L};[VP]CKVEAPV;[VP]CKEVAPV;[VP]CKEPVAV;[VP]CKEPVG{I|L};{[CP]|[EA]}VKVEPAV;{[CP]|[EA]}VKVEPG{I|L} 8.3359;8.2844;8.1515;8.1;7.8239;7.7724;6.7078;6.5234;5.5163;5.3319 -;-;+;-;-;-;-;-;-;- + 514 NaN NaN 300993.2 NaN 5756 2310 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8069 42.569 NaN 326850 35 0 33461 0.261 + 225 AFDASRTSF 9 73 501.23806053076987 1000.4615681283398 2 501.23779296875 MULTI HCD FTMS 0 0 0 8067 101711.140625 0.8702777383011415 -2 0.056072235107421875 2 Unmodified _AFDASRTSF_ ENSG00000105245|ENST00000252891|NUMBL 63.227496030279354 0.01306643085373406 1 {[MS]|[{M(Oxidation (M))|F}A]}DASRTS{M(Oxidation (M))|F} 9 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 60.539 3.7236 1.7073 6.0511 6.0511 63.369 0 0 0 0 23.863781092484686 0 0 0 2.6549471895720984 0 0.3054621874040891 0 + + {[MS]|[{M(Oxidation (M))|F}A]}DASRTS{M(Oxidation (M))|F} 6.0511 + + 366 + NaN NaN 134901.6 NaN 5757 2310 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8070 42.573 NaN 419460 35 0 38379 0.261 + 4702 EYQIKTNQL 9 65 568.8009549943987 1135.5873570555973 2 568.8004760742188 MULTI HCD FTMS 0 0 0 8067 154014.234375 0.741521158971099 -1 0.03633880615234375 3 Unmodified _EYQIKTNQL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF 110.5527297667825 0.0028521687250969148 1 [YE]Q{I|L}KTNQ{I|L} 9 0 + 75.12 0 0 6.6151 6.6151 89.082 0 0 0 43.16492394092492 6.311508337315175 6.311508337315175 9.208187539523749 0 1.416386562212267 1.5228787452803376 0.7302046884880937 1.5114393726401687 + + [YE]Q{I|L}KTNQ{I|L};[YE][AG]{I|L}KTNQ{I|L};[YE]Q{I|L}KTGGQ{I|L};[YE][AG]{I|L}KTGGQ{I|L};N{M(Oxidation (M))|F}{[NV]|[RG]}K{I|L}{[CA]|SS}D{I|L};N{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}V{I|L}{[CA]|SS}D{I|L};N{M(Oxidation (M))|F}{[CA]|SS}{I|L}{I|L}TNQ{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}K{I|L}Q[YQ] 6.6151;5.8042;5.8042;4.9972;2.6446;1.6703;0.62678;0.52728 +;-;-;-;-;-;-;- + 807 + NaN NaN 148529.8 NaN 5758 2310 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8071 42.576 NaN 89027 35 0 21808 0.261 -1 VYCKRKSRV 9 23 598.3399272325928 1194.6653015319855 2 598.33935546875 MULTI HCD FTMS 0 0 0 8067 57844.3828125 0.6677053381123101 4 -0.10553741455078125 4 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))KRKSRV_ ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 4.3292370932331545 0.3181982124262546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99655 NaN 5759 2310 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8072 42.579 NaN 155020 35 0 19716 0.262 -1 RYLSPKYIKMF 11 47 487.93555228524644 1460.7848274559394 3 487.93548583984375 MULTI HCD FTMS 0 0 0 8067 43434.73828125 0.1269834778509375 17 -0.4852333068847656 5 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 14.170726826480097 0.3336124043171337 1 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 13.5 0 0 0.92416 0 0 744.429433024102 0 744.429433024102 0 6.510234424404686 0 0 0 0.8807196863200843 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.92416 + + 77 + NaN NaN 101256.9 NaN 5760 2310 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8073 42.583 NaN 145000 35 0 22365 0.262 + 5886 FPDHVDTQHL 10 62 403.5279427375886 1207.5619988129658 3 403.86224365234375 MULTI HCD FTMS 0 0 0 8067 29430.556640625 0.7872198002397324 6 -0.15839767456054688 6 Unmodified _FPDHVDTQHL_ ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8 14.170726826480097 0.37856381928143323 1 {M(Oxidation (M))|F}DV[HD]PE 7 6 37.791 0 0 3.1295 0 0 350.19444472480626 0 350.19444472480626 0 25.572741603978884 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {M(Oxidation (M))|F}DV[HD]PE 3.1295 - 31 NaN NaN 103243.5 NaN 5761 2310 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8075 42.588 NaN 455140 35 0 41212 0.327 + 12320 KMPKFKMPSF 10 73 419.5555857130238 1255.6449277392715 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8074 242935.40625 0.9114334413368994 1 -0.026371002197265625 1 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 48.56086444690353 0.08302335073406558 1 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 0 + 77.802 0 0 6.1961 6.1961 93.71 0 0 0 55.81190204817359 24.03643661186777 24.03643661186777 77.80160209153378 0 1.5941876774005248 0 0.8494850021680094 0 + + KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 6.1961 + + 52 + NaN NaN 154025.7 NaN 5762 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8076 42.592 NaN 433900 35 0 42082 0.261 + 13064 KYLDNPNAL 9 77 524.2770955023402 1046.5396380714803 2 524.27685546875 MULTI HCD FTMS 0 0 0 8074 139349.859375 0.669368666963984 2 -0.05274200439453125 2 Unmodified _KYLDNPNAL_ ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;nc|ENSG00000197256|Q63ZY3-3|KANK2 61.60191391372663 0.015340508911304802 1 [YK]{I|L}DN[NP]A{I|L} 9 0 + 36.583 0 0 3.4956 3.4956 84.903 0 0 0 5.6424927368726046 16.70125787036755 5.6424927368726046 9.208187539523756 0 1.1549471895720984 0 0.3252574989159953 0.6989700043360187 + + [YK]{I|L}DN[NP]A{I|L};[YK]{I|L}DGG[NP]A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[VG]K[NP]A{I|L} 3.4956;2.6158;2.4213 +;-;- + 484 NaN NaN 152626.5 NaN 5763 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8077 42.596 NaN 318180 35 0 72600 0.261 + 11441 IYQDRDQFAKL 11 49 466.24537478176086 1395.7142949454826 3 466.2451477050781 MULTI HCD FTMS 0 0 0 8074 144105.671875 1 0 0 3 Unmodified _IYQDRDQFAKL_ ENSG00000132589|ENST00000394908|FLOT2;ENST00000577789.5_1_17:27207581-27224656:-|nuORF 18.3397198061782 0.2972878317988595 1 {I|L}YQ 3 8 57.747 0 0 4.1375 0 0 0 988.4837270230681 988.4837270230681 50.75765943524473 0 0 0 0 0.7302046884880937 2 0 0.4247425010840047 + {I|L}YQ 4.1375 + + 34 + NaN NaN 135640.5 NaN 5764 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8078 42.599 NaN 283700 35 0 43796 0.261 + 629 APHEDTLSL 9 52 491.74558076763327 981.4766086020666 2 491.74560546875 MULTI HCD FTMS 0 0 0 8074 132763.140625 0.3935046755547191 -4 0.11554718017578125 4 Unmodified _APHEDTLSL_ ENSG00000137857|ENST00000389037|DUOX1;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2 46.020951573049366 0.037705236580089195 1 SEES{I|L}S{I|L} 7 5 54.244 0 0 5.5268 0 0 218.11500746894689 0 218.11500746894689 0 47.25472695603955 0 0 0 1.1989700043360187 0 0.8494850021680094 0 SEES{I|L}S{I|L} 5.5268 - 317 NaN NaN 133319.7 NaN 5765 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8079 42.603 NaN 307640 35 0 32413 0.261 + 5673 FPAEAGRDTL 10 49 538.772146697701 1075.529740462202 2 538.771728515625 MULTI HCD FTMS 0 0 0 8074 87018.96875 0.5963289009242261 -9 0.267547607421875 5 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 35.61225514009592 0.18348312004207498 1 AEAPE 5 7 52.563 0 0 4.8872 0 0 560.2925270223966 0 560.2925270223966 0 36.10924374808178 0 0 0 1.2302046884880937 0 0.3807196863200844 0 AEAPE 4.8872 - 78 NaN NaN 135125.2 NaN 5766 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8080 42.606 NaN 78443 35 0 27155 0.261 -1 RYKLYQEMF 9 21 647.3186501761008 1292.6227474190016 2 647.3184204101562 MULTI HCD FTMS 0 0 0 8074 54646.76171875 0.5954318886325204 4 -0.10878753662109375 6 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 13.90604991867851 0.24021115267848145 1 {I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 6 -1 28.416 0 0 2.1984 0 0 447.26045424629064 0 447.26045424629064 0 28.416375079047498 0 0 0 0 0 0 0 {I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 2.1984 - 37 NaN NaN 94287.7 NaN 5767 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8081 42.609 NaN 31599 35 0 4277.4 0.261 -1 RFMEETANF 9 23 580.7562680234499 1159.4979831136998 2 580.7554931640625 MULTI HCD FTMS 0 0 0 8074 20320.509765625 0.655360588443089 1 -0.026371002197265625 7 Oxidation (M) _RFM(Oxidation (M))EETANF_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 2.9952420565917617 0.3283108881486655 1 N{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.5488 0 0 880.3743763654312 0 880.3743763654312 0 10.740312677277188 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 1.5488 + + 6 NaN NaN 90164.9 NaN 5768 2311 8074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8083 42.614 NaN 181100 35 0 49634 0.327 -1 RADQFEYVM 9 26 587.763538542368 1173.512524151536 2 587.7633056640625 MULTI HCD FTMS 0 0 0 8082 145355.8125 0.25268716556768733 6 -0.16501617431640625 1 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 33.4449034751529 0.0954363425218424 1 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 -1 65.394 0 0 5.5725 0 0 342.16465956855626 0 342.16465956855626 0 65.39381281052492 0 0 0 2.4247425010840047 0 0 0 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5.5725 + + 51 NaN NaN 118525.9 NaN 5769 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8084 42.619 NaN 437080 35 0 78232 0.261 + 23733 RRCAFWAH 8 72 523.7589697932202 1045.5033866532403 2 523.7427368164062 MULTI HCD FTMS 0 0 0 8082 7101.42236328125 0.012186871170511877 21 -0.6039772033691406 2 Unmodified _RRCAFWAH_ ENST00000246672.3_1_17:38252288-38252739:-|nuORF 5.760428011301431 0.5334459684533844 1 AYD{[CP]|[EA]}Y[{I|L}A] 8 6 18.633 0 0 1.7822 0 0 131.12678950748426 0 131.12678950748426 0 -4.043162181802199 -4.043162181802199 0 0 0 0 0.6237125054200234 0 AYD{[CP]|[EA]}Y[{I|L}A] 1.7822 - 384 + NaN NaN 175641.8 NaN 5770 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8085 42.622 NaN 181040 35 0 23579 0.261 -1 EGDLHTPML 9 55 514.7397694503859 1027.4649859675717 2 515.7619018554688 MULTI HCD FTMS 0 0 0 8082 3447.348388671875 0.9527983427105018 -1 0.026371002197265625 3 Oxidation (M) _EGDLHTPM(Oxidation (M))L_ ENSG00000148468|ENST00000378116|FAM171A1 15.847184025352803 0.2234401846867398 1 {[DA]|[EG]}D{I|L}REQA 8 -1 41.368 0 0 4.0262 0 0 0 126.02823922166887 126.02823922166887 29.94132235100295 0 0 0 0 0 1.3979400086720375 0.3054621874040891 0 {[DA]|[EG]}D{I|L}REQA 4.0262 - 143 NaN NaN 104447.3 NaN 5771 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8086 42.626 NaN 601630 35 0 59574 0.261 + 25183 SANLEEVTM 9 58 505.22905588523105 1008.4435588372621 2 505.22882080078125 MULTI HCD FTMS 0 0 0 8082 224183.1875 0.3124786348315057 -9 0.2641792297363281 4 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 121.5340881639634 0.001118397630175091 1 {I|L}EEVT{M(Oxidation (M))|F} 6 3 68.571 0 0 6.7997 0 0 272.1121998517594 0 272.1121998517594 0 60.61247546857874 0 0 0 2.2302046884880937 0 1.110924374808178 0 + {I|L}EEVT{M(Oxidation (M))|F} 6.7997 + + 346 NaN NaN 173353.6 NaN 5772 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8087 42.629 NaN 186760 35 0 46691 0.261 + 24924 RYSPVLSRF 9 47 562.8145156146995 1123.614478296199 2 562.813720703125 MULTI HCD FTMS 0 0 0 8082 94357.09375 0.9107845439489429 -1 0.026371002197265625 5 Unmodified _RYSPVLSRF_ ENSG00000166685|ENST00000299886|COG1 16.565877749689598 0.21723083036893404 1 CRE 3 8 26.95 0 0 2.3986 0 0 717.4166737287125 0 717.4166737287125 0 9.158781176037888 0 0 0 0.5 0 0 0.4247425010840047 CRE 2.3986 - 58 NaN NaN 102262.7 NaN 5773 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8088 42.632 NaN 101430 35 0 11311 0.261 -1 HYMSINDSF 9 29 565.2346759331809 1128.4547989331618 2 565.2347412109375 MULTI HCD FTMS 0 0 0 8082 43296.83984375 0.6741662963533802 -3 0.08583450317382812 6 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 38.175570920033316 0.07371992880350783 1 NDS{M(Oxidation (M))|F} 4 -1 55.165 0 0 4.8885 0 0 647.2736598724181 0 647.2736598724181 0 48.17532531436136 0 0 0 2 0 0.9247425010840047 0 NDS{M(Oxidation (M))|F} 4.8885 + + 22 + NaN NaN 100087.5 NaN 5774 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8089 42.636 NaN 146640 35 0 16226 0.261 + 27382 SYSQGASAPF 10 55 507.7307359429302 1013.4469189526604 2 507.7300109863281 MULTI HCD FTMS 0 0 0 8082 41263.04296875 0.6090433373788857 -3 0.08583450317382812 7 Unmodified _SYSQGASAPF_ REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant 18.1463463914782 0.3413772152514074 1 G{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5625 0 0 791.3467430266824 0 791.3467430266824 0 -2.614393726401687 -2.614393726401687 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 2.5625 - 24 + NaN NaN 122454.7 NaN 5775 2312 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8091 42.641 NaN 771090 35 0 114000 0.327 + 5062 FDSFSSLVR 9 67 529.2688686697817 1056.5231844063633 2 529.2509155273438 MULTI HCD FTMS 0 0 0 8090 9581.7529296875 0.14432565131416059 6 -0.17501449584960938 1 Unmodified _FDSFSSLVR_ LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant 14.838274106304384 0.23215694253501695 1 YVGVDSDE 8 8 51.068 0 0 4.8336 0 0 174.139530697182 0 174.139530697182 0 -7.5404627391503 -7.5404627391503 0 0 0.23020468848809378 0 2.190614065464281 0 YVGVDSDE 4.8336 - 903 + NaN NaN 202667.5 NaN 5776 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8092 42.645 NaN 655360 35 0 70431 0.261 + 22291 QPEHGPNTDLL 11 72 610.7990586562001 1219.5835643792002 2 610.7989501953125 MULTI HCD FTMS 0 0 0 8090 293371.03125 0.7654123670069868 1 -0.02967071533203125 2 Unmodified _QPEHGPNTDLL_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 43.981846655682396 0.1113057155252403 1 {I|L}NT 3 9 23.258 0 0 1.907 0 0 149.1114380399859 739.280229868087 888.3916679080728 0 0 0 0 0 0 0 0.3252574989159953 0.3807196863200844 {I|L}NT 1.907 - 369 + NaN NaN 179769.6 NaN 5777 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8093 42.649 NaN 196670 35 0 13146 0.262 + 1984 DASAEVERL 9 53 495.2485578600426 988.4825627868852 2 495.2483825683594 MULTI HCD FTMS 0 0 0 8090 100631.8046875 0.3562124730093273 4 -0.11226272583007812 3 Unmodified _DASAEVERL_ ENSG00000130303|ENST00000252593|BST2;nc|ENSG00000130303|Q10589-2|BST2 87.25819977447905 0.004597812622239197 1 {[DA]|[EG]}SAEVER{I|L} 9 0 + 105.37 0 0 10.66 10.66 97.702 0 0 0 14.463950151760656 14.463950151760656 14.463950151760656 25 0 2.9247425010840047 1.6989700043360187 1.531234684152075 0 + + {[DA]|[EG]}SAEVER{I|L};{[SA]|[TG]}DAEVER{I|L} 10.66;8.1308 +;- + 149 NaN NaN 112806.1 NaN 5778 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8094 42.652 NaN 281410 35 0 29188 0.261 + 3917 EPSEVFINR 9 51 545.7801606701761 1089.545768407152 2 545.77978515625 MULTI HCD FTMS 0 0 0 8090 107359.625 0.6199386270308672 3 -0.08253097534179688 4 Unmodified _EPSEVFINR_ ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000121390|Q8WXF1-2|PSPC1 20.453626601364224 0.18364154288633264 1 V{M(Oxidation (M))|F}{I|L}NR 5 4 35.534 0 0 3.2614 0 0 442.169482034992 0 442.169482034992 0 8.16540461883358 0 0 0 0 0 0 0.6861818737241735 + V{M(Oxidation (M))|F}{I|L}NR 3.2614 + + 166 + NaN NaN 128477.9 NaN 5779 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8095 42.655 NaN 121430 35 0 8533.3 0.261 + 2433 DPTDVAALR 9 54 479.25430999477356 956.4940670563471 2 479.2523498535156 MULTI HCD FTMS 0 0 0 8090 38705.44140625 0.6441900821728789 2 -0.0560455322265625 5 Unmodified _DPTDVAALR_ ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20 55.50274090549119 0.023872834264864425 1 [DP]TDVAA{I|L}R 9 0 + 62.954 0 0 6.5818 6.5818 92.948 0 0 0 50.48000610965907 7.944539621753535 7.944539621753535 30.713337517843655 0 2.385151878060192 0 0.5 0 + + [DP]TDVAA{I|L}R;[DP]TD[Q{I|L}]{I|L}R 6.5818;3.3707 +;- + 120 + NaN NaN 118695.6 NaN 5780 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8096 42.659 NaN 71072 35 0 9426.9 0.261 + 27822 TAYVGSAVM 9 28 457.7179237994304 913.4212946656609 2 457.71771240234375 MULTI HCD FTMS 0 0 0 8090 41720.765625 0.5759093860067251 6 -0.17501449584960938 6 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 58.678817012210395 0.019429721296335044 1 [YT]ASGVAV{M(Oxidation (M))|F} 9 4 + 74.531 0 0 8.1595 8.1595 89.569 0 0 0 6.064921830680703 6.064921830680703 6.064921830680703 6.064921830680703 0 0.8494850021680094 0 1.1421590589602533 0 [YT]ASGVAV{M(Oxidation (M))|F};[YT]AVGSAV{M(Oxidation (M))|F};[TA]YVGSAV{M(Oxidation (M))|F};[YT]{[QS]|[NT]}VAV{M(Oxidation (M))|F};[TA]YSGVAV{M(Oxidation (M))|F};[YT]AV{[QS]|[NT]}V{M(Oxidation (M))|F};[TA]YV{[QS]|[NT]}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[MG]|[TS]}GSAV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[MG]|[TS]}{[QS]|[NT]}V{M(Oxidation (M))|F} 8.1595;7.4955;7.2966;6.604;6.0041;5.94;5.7411;5.7163;3.6945 -;-;+;-;-;-;-;-;- + 167 NaN NaN 85396.6 NaN 5781 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8097 42.662 NaN 60827 35 0 12050 0.261 + 15434 LPDKWQHDL 9 34 576.296165728592 1150.5777785239839 2 576.2955322265625 MULTI HCD FTMS 0 0 0 8090 25596.658203125 0.6365359147799339 -2 0.05274200439453125 7 Unmodified _LPDKWQHDL_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 16.565877749689598 0.21723083036893404 1 {I|L}PDK 4 5 38.175 0 0 3.3179 0 0 0 694.2953585260374 694.2953585260374 20.21652514092061 0 0 0 0 0.5 0 0.4247425010840047 0 + {I|L}PDK 3.3179 + + 11 + NaN NaN 112375.9 NaN 5782 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8098 42.665 NaN 191450 35 0 19202 0.261 -1 DMHTEVTTL 9 53 531.7421757598927 1061.4697985865853 2 532.2562255859375 MULTI HCD FTMS 0 0 0 8090 10369.896484375 0.034197832841171207 48 -1.3552665710449219 8 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 13.90604991867851 0.24021115267848145 1 TT{I|L} 3 -1 24.029 0 0 2.2637 0 0 728.2799549787125 0 728.2799549787125 0 10.757659435244733 0 0 0 0.9247425010840047 0 0 0 TT{I|L} 2.2637 + + 41 NaN NaN 114441.2 NaN 5783 2313 8090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8100 42.67 NaN 608080 35 0 149510 0.327 + 8986 HPEEGDLDL 9 58 512.7326878923853 1023.4508228515707 2 512.732421875 MULTI HCD FTMS 0 0 0 8099 425449.4375 0.2725993409904621 -7 0.19795989990234375 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 92.4914307365334 0.004460681868130716 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 73.452 0 0 7.1769 7.1769 93.278 0 0 0 3.65279269351241 43.288493772929044 3.65279269351241 21.197887582883936 0 2.2302046884880937 0 1.1307196863200843 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L} 7.1769;5.1057 +;- + 189 NaN NaN 187778.3 NaN 5784 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8101 42.675 NaN 143380 35 0 17458 0.261 + -1 MNSTRRYMRE 10 53 453.87994203616904 1358.617996708707 3 453.8799133300781 MULTI HCD FTMS 0 0 0 8099 48879.76171875 0.1503082002913427 36 -1.012420654296875 2 Oxidation (M) _M(Oxidation (M))NSTRRYMRE_ REV__ENSG00000154678|ENST00000396191|PDE1C;REV__nc|ENSG00000154678|Q14123-2|PDE1C;REV__nc|ENSG00000154678|Q14123-3|PDE1C 4.715918219556657 0.45034159980724314 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.4386276674945 0 1037.4386276674945 0 2.4742501084004687 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 - 30 + NaN NaN 108125.1 NaN 5785 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8102 42.678 NaN 118120 35 0 26450 0.261 -1 FPHSMEPQL 9 35 551.2551805866307 1100.4958082400613 2 551.2547607421875 MULTI HCD FTMS 0 0 0 8099 59810.296875 0.9910678275377485 2 -0.052860260009765625 3 Oxidation (M) _FPHSM(Oxidation (M))EPQL_ ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF 29.081581746732265 0.1154664336125038 1 PQ{I|L} 3 -1 35.005 0 0 3.1808 0 0 744.2907699727614 0 744.2907699727614 0 26.32068444291761 0 0 0 0.5 0 0 0.3807196863200844 PQ{I|L} 3.1808 + + 29 NaN NaN 108149.2 NaN 5786 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8103 42.682 NaN 73349 35 0 6663.3 0.261 + 17060 LYKPDSNEF 9 29 556.7666996481931 1111.5188463631862 2 556.7666015625 MULTI HCD FTMS 0 0 0 8099 24822.400390625 0.12192790173399358 8 -0.23438644409179688 4 Unmodified _LYKPDSNEF_ ENSG00000181433|ENST00000370709|SAGE1 13.042465956692817 0.2476723265019929 1 [Y{I|L}]K 3 6 37.447 0 0 3.369 0 0 0 704.2542338966424 704.2542338966424 32.84318117920506 0 0 0 0 1 1.6989700043360187 0 0 + [Y{I|L}]K 3.369 + + 8 NaN NaN 89083.2 NaN 5787 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8104 42.685 NaN 50142 35 0 9929.2 0.261 + 35404 YYEEQHPEL 9 27 604.2670896750219 1206.5196264168437 2 604.2682495117188 MULTI HCD FTMS 0 0 0 8099 22372.755859375 0.009723352482925112 65 -1.8478507995605469 5 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 17.11289562659939 0.2125047172822487 1 YYE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H 6 3 35.775 0 0 2.9651 0 0 0 354.1623629205688 354.1623629205688 35.77500619321228 0 0 0 0 0.8494850021680094 2 0 0 + YYE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H 2.9651 + + 5 + NaN NaN 94382.5 NaN 5788 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8105 42.688 NaN 83292 35 0 12492 0.261 -1 LYQDHMQYI 9 27 613.7784200703019 1225.5422872074037 2 613.7786865234375 MULTI HCD FTMS 0 0 0 8099 34759.5859375 1 0 0 6 Oxidation (M) _LYQDHM(Oxidation (M))QYI_ ENSG00000114251|ENST00000264634|WNT5A;ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A 10.823927491677226 0.26684000660059787 1 P{I|L}{I|L} 3 -1 26.198 0 0 2.1377 0 0 884.3322483612451 0 884.3322483612451 0 20.713337517843655 0 0 0 0 0 0 0 P{I|L}{I|L} 2.1377 - 7 NaN NaN 85720.6 NaN 5789 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8106 42.692 NaN 25410 35 0 6245.1 0.261 + 16324 LRHFCWPRY 9 15 639.3222692834355 1276.629985633671 2 639.3222045898438 MULTI HCD FTMS 0 0 0 8099 7404.6259765625 0.73395711430027 1 -0.02637481689453125 7 Unmodified _LRHFCWPRY_ ENSG00000155846|ENST00000309241|PPARGC1B;ENST00000492495.1_1_5:149225260-149227118:+|nuORF;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B;nc|ENSG00000155846|Q86YN6-6|PPARGC1B 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94007.4 NaN 5790 2314 8099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8108 42.697 NaN 244640 35 0 30003 0.327 + 25082 SADMSHVAL 9 56 465.72104254512186 929.4275321570437 2 465.7207336425781 MULTI HCD FTMS 0 0 0 8107 130372.8515625 0.9030629208419404 -2 0.0560455322265625 1 Unmodified _SADMSHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 41.8396318013385 0.056899836730939755 1 {[SA]|[TG]}DMSHVA{I|L} 9 0 + 42.123 0 0 4.5321 4.5321 89.751 0 0 0 5.6424927368725974 33.17053316233837 5.6424927368725974 36.24704574972802 0 1.8812033112643842 0 0 0 + + {[SA]|[TG]}DMSHVA{I|L};{[SA]|[TG]}[YG][WY]A{I|L} 4.5321;0.63221 +;- + 65 NaN NaN 122444.4 NaN 5791 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8109 42.701 NaN 98345 35 0 24139 0.261 + 5349 FFTSSGSGF 9 29 468.70887674523397 NaN 0 468.6935119628906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FFTSSGSGF_ ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2 2.0597508629832335 0.2852655770354268 1 D 1 9 5.4846 0 0 0.58633 0 0 427.2372001199203 390.1157320611938 817.352932181114 0 0 0 0 0 0 0 0 0 D 0.58633 - 9 + NaN NaN 108122.1 NaN 5792 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8110 42.705 NaN 182880 35 0 21419 0.261 -1 HEVENCCD 8 51 531.6846773354623 1061.3548017377245 2 531.6846923828125 MULTI HCD FTMS 0 0 0 8107 42893.80078125 0.7038862219473552 -5 0.1319122314453125 3 2 Carbamidomethyl (C) _HEVENC(Carbamidomethyl (C))C(Carbamidomethyl (C))D_ ENST00000369878.8_1_10:104837250-104837358:+|nuORF 2.302733041254933 0.5385759549224092 1 TQ 2 -1 7.0783 0 0 0.66692 0 0 257.92427302854327 571.3009127252561 829.2251857537995 0 0 0 0 0 0 0 0 0 TQ 0.66692 - 25 + NaN NaN 107190.2 NaN 5793 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8111 42.708 NaN 77232 35 0 10489 0.261 -1 SSEMNQIMM 9 32 559.7103460960433 1117.4061392588865 2 559.7218017578125 MULTI HCD FTMS 0 0 0 8107 4427.4375 0.5481644117450226 -2 0.0560455322265625 4 3 Oxidation (M) _SSEM(Oxidation (M))NQIM(Oxidation (M))M(Oxidation (M))_ ENST00000367498.7_1_1:185280415-185286453:-|nuORF 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 38.984 0 0 3.4888 0 0 165.02208348133792 0 165.02208348133792 0 31.994332193581414 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4888 - 67 + NaN NaN 90270.5 NaN 5794 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8112 42.711 NaN 333300 35 0 90137 0.263 + 35555 YYHARVYEF 9 41 416.5328933802519 1246.5768507409557 3 416.8673400878906 MULTI HCD FTMS 0 0 0 8107 48548.7578125 0.32474302712727177 -5 0.1319122314453125 5 Unmodified _YYHARVYEF_ ENSG00000108344|ENST00000264639|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3 6.630372943996041 0.3007538891620783 1 E{M(Oxidation (M))|F} 2 7 30.217 0 0 2.424 0 0 952.4529355698517 0 952.4529355698517 0 30.21652514092061 0 0 0 0.5 0 0.4247425010840047 0 + E{M(Oxidation (M))|F} 2.424 + + 6 NaN NaN 134585.6 NaN 5795 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8113 42.715 NaN 43703 35 0 5450 0.261 + -1 TSIIMKLGNW 10 31 589.8153106192221 1177.6160683052442 2 589.81494140625 MULTI HCD FTMS 0 0 0 8107 21159.20703125 0.04342554284924874 30 -0.8609771728515625 6 Oxidation (M) _TSIIM(Oxidation (M))KLGNW_ REV__nc|ENSG00000162374|P26378|ELAVL4 5.296884461304476 0.4472664531305844 1 K 1 -1 15.242 0 0 1.2943 0 0 488.227247310107 558.2663668268186 1046.4936141369255 0 0 0 0 0 0.8252574989159953 0 0 0 K 1.2943 + + 3 + NaN NaN 84963.3 NaN 5796 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8114 42.718 NaN 66734 35 0 16689 0.262 + 18637 MYDDIAHS 8 40 476.1981833591701 NaN 0 476.19818115234375 PEAK HCD FTMS 0 0 0 8107 8655.2109375 0.28986052515924454 34 -0.9497566223144531 7 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 3.0989 0 0 0.32607 0 0 426.221304607209 406.11179529361567 832.3330999008247 0 0 0 0 0 0 0 0 0 + D 0.32607 + + 1 + NaN NaN 103845.1 NaN 5797 2315 8107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8116 42.723 NaN 1363600 35 0 382580 0.327 + 30608 VPCKVEPGL 9 62 471.2599468143941 940.5053406955882 2 471.2596740722656 MULTI HCD FTMS 0 0 0 8115 646679.3125 0.711686197645745 5 -0.14850997924804688 1 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 79.59630418116434 0.005983006570063981 1 [VP]CKEVPG{I|L} 9 2 + 62.647 0 0 6.661 6.661 84.29 0 0 0 17.73760604659629 24.089124827198212 17.73760604659629 0.12304505667545129 0 1.6643943297944483 1.3979400086720375 0.3252574989159953 0 [VP]CKEVPG{I|L};[VP]CKVEPG{I|L};[VP]CKEVPAV;[VP]CKVEPAV;[VP]CKEVAPV;[VP]CKVEAPV;{I|L}{[DA]|[EG]}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L}{I|L} 6.661;6.6479;6.1279;6.1148;5.6859;5.6728;0.86221 -;+;-;-;-;-;- + 140 NaN NaN 306991.5 NaN 5798 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8117 42.728 NaN 1013900 35 0 381060 0.261 + 8566 HATVATENEVF 11 46 609.2935442959097 1216.5725356586192 2 609.29345703125 MULTI HCD FTMS 0 0 0 8115 516893.25 0.5210708705709437 -3 0.08253097534179688 2 Unmodified _HATVATENEVF_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 66.68293810318366 0.018539700951393005 1 VATENEV{M(Oxidation (M))|F} 8 3 89.902 0 0 7.3898 0 0 309.14351088691564 0 309.14351088691564 0 76.7684475723096 0 0 0 2.6861818737241734 0 0.8494850021680094 0.3054621874040891 + VATENEV{M(Oxidation (M))|F} 7.3898 + + 227 NaN NaN 249238.4 NaN 5799 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8118 42.731 NaN 404640 35 0 35025 0.264 + 12321 KMPKFKMPSF 10 68 419.5555857130238 1255.6449277392715 3 419.5556945800781 MULTI HCD FTMS 0 0 0 8115 238672.640625 0.8954406010869764 6 -0.18152618408203125 3 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 40.714236015149055 0.13920871250597291 1 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 0 + 77.498 0 0 6.172 6.172 93.665 0 0 0 55.50820653692661 17.92719286378599 17.92719286378599 77.4979065802868 0 1.9361818737241734 0 0 0 + + KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 6.172 + + 130 + NaN NaN 144964.5 NaN 5800 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8119 42.735 NaN 170500 35 0 16295 0.261 + 4703 EYQIKTNQL 9 47 568.8009549943987 1135.5873570555973 2 568.80078125 MULTI HCD FTMS 0 0 0 8115 62885.4296875 0.3027699153490699 5 -0.14850997924804688 4 Unmodified _EYQIKTNQL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF 45.739877483867886 0.03899552410870734 1 TK{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{I|L} 6 7 33.492 0 0 2.9493 0 0 373.1971607892594 0 373.1971607892594 0 22.522431204052324 0 0 0 0.7059771852360797 0 0.5 0.3807196863200844 TK{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{I|L} 2.9493 - 87 NaN NaN 109414 NaN 5801 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8120 42.738 NaN 293010 35 0 26250 0.261 + 19341 NPDEFYYKM 9 55 611.7579230907169 1221.5012932482337 2 611.75732421875 MULTI HCD FTMS 0 0 0 8115 97670.9765625 0.9861503835586032 2 -0.05611419677734375 5 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 61.08992128646608 0.016056751534446034 1 NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 0 + 67.29 0 0 5.5088 5.5088 92.353 0 0 0 47.82637491194109 7.064083326475128 7.064083326475128 67.29032506370174 0 1.8411290632962718 0 0.3807196863200844 0 + + NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 5.5088 + + 72 + NaN NaN 127148.9 NaN 5802 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8121 42.741 NaN 188430 35 0 16561 0.262 + 7960 GEDNRPGMR 9 55 516.2373680903139 NaN 0 516.2197265625 PEAK HCD FTMS 0 0 0 8115 4718.634765625 0.9846027758243957 -1 0.026485443115234375 6 Unmodified _GEDNRPGMR_ ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 10.073929032068715 0.24642998803896465 1 N{I|L} 2 8 14.024 0 0 1.3609 0 0 158.1044392110644 642.2060480969964 800.3104873080608 0 0 0 0 0 0 0 0 0.3054621874040891 N{I|L} 1.3609 - 90 + NaN NaN 109489.6 NaN 5803 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8122 42.744 NaN 54602 35 0 8776.2 0.261 + 6137 FPEGNPAKI 9 29 486.7611657004722 971.5077784677444 2 486.76092529296875 MULTI HCD FTMS 0 0 0 8115 29708.748046875 0.6689338004898194 -1 0.026485443115234375 7 Unmodified _FPEGNPAKI_ ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 21.590151480376914 0.17382222009858564 1 {M(Oxidation (M))|F}PE[NG][PA]K{I|L} 9 0 + 32.598 0 0 3.3554 3.3554 86.121 0 0 0 7.381062318217111 4.409999832893597 4.409999832893597 13.467874862246564 0 1.8494850021680094 0 0 0 + + {M(Oxidation (M))|F}PE[NG][PA]K{I|L};{M(Oxidation (M))|F}PQQ[DP]K{I|L} 3.3554;1.9691 +;- + 14 + NaN NaN 104976.2 NaN 5804 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8123 42.748 NaN 24960 35 0 4265.2 0.261 -1 CHYYRVLEP 9 23 618.7968135403453 1235.5790741474905 2 618.7953491210938 MULTI HCD FTMS 0 0 0 8115 12870.2705078125 0.4543391022002244 -5 0.13527297973632812 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))HYYRVLEP_ ENSG00000181915|ENST00000373783|ADO 1.844237919475145 0.33703635659052655 1 {I|L}[EP] 3 -1 10.458 0 0 0.84637 0 0 878.3739491193375 0 878.3739491193375 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}[EP] 0.84637 + + 1 NaN NaN 111923.1 NaN 5805 2316 8115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8125 42.753 NaN 348790 35 0 55612 0.327 + 630 APHEDTLSL 9 51 491.74558076763327 981.4766086020666 2 491.7455749511719 MULTI HCD FTMS 0 0 0 8124 235643.921875 0.6984392248280579 2 -0.06275177001953125 1 Unmodified _APHEDTLSL_ ENSG00000137857|ENST00000389037|DUOX1;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2 32.30548876998284 0.10066689432505688 1 DT{I|L}S{I|L} 5 4 49.068 0 0 4.9994 0 0 434.1956959455094 0 434.1956959455094 0 35.088643834802156 0 0 0 0.5 0 0.8494850021680094 0 + DT{I|L}S{I|L} 4.9994 + + 75 NaN NaN 141539.6 NaN 5806 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8126 42.757 NaN 387560 35 0 36631 0.261 + 5674 FPAEAGRDTL 10 56 538.772146697701 1075.529740462202 2 538.77197265625 MULTI HCD FTMS 0 0 0 8124 142670.390625 0.9777003618631859 -3 0.08259201049804688 2 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 47.7319792270244 0.08603782309361356 1 AEAPE 5 7 60.063 0 0 5.5845 0 0 560.2924941912944 0 560.2924941912944 0 40.59894379144197 0 0 0 1.555462187404089 0 0.805462187404089 0 AEAPE 5.5845 - 209 NaN NaN 136834.1 NaN 5807 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8127 42.761 NaN 87599 35 0 24411 0.261 -1 RADQFEYVM 9 28 587.763538542368 1173.512524151536 2 587.76318359375 MULTI HCD FTMS 0 0 0 8124 67974.375 0.1181669439602566 11 -0.3268165588378906 3 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 16.149105407346934 0.22083165093524068 1 EYV{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.9998 0 0 617.2916126935562 0 617.2916126935562 0 45.34440644703906 0 0 0 1.5 0 0 0 EYV{M(Oxidation (M))|F} 3.9998 + + 25 NaN NaN 115494.9 NaN 5808 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8128 42.764 NaN 168610 35 0 20081 0.262 -1 RYLSPKYIKMF 11 56 487.93555228524644 1460.7848274559394 3 487.9353942871094 MULTI HCD FTMS 0 0 0 8124 37795.671875 0.11049740489566137 24 -0.6994743347167969 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 10.52747425323666 0.3653561834368464 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]A{M(Oxidation (M))|F} 6 -1 17.14 0 0 1.1733 0 0 0 702.3671388175206 702.3671388175206 3.1825031801593475 0 0 0 0 0 1.3010299956639813 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]A{M(Oxidation (M))|F} 1.1733 - 63 NaN NaN 101656.7 NaN 5809 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8129 42.768 NaN 254410 35 0 19960 0.261 + 9445 HPVQIQTQL 9 55 532.2984512421451 1062.5823495510901 2 532.2981567382812 MULTI HCD FTMS 0 0 0 8124 67058.171875 0.9232311302997253 -2 0.056217193603515625 5 Unmodified _HPVQIQTQL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 36.506200033944 0.08138327636155518 1 QT{I|L}QTQ{I|L} 7 4 53.136 0 0 5.0006 0 0 232.1419392316422 0 232.1419392316422 0 45.17683537374076 0 0 0 0.7302046884880937 0 0.4247425010840047 0.3494850021680094 QT{I|L}QTQ{I|L} 5.0006 - 386 NaN NaN 131759.6 NaN 5810 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8130 42.771 NaN 64352 35 0 9147.1 0.261 + -1 VSHPVCMI 8 41 479.72871074193137 957.4428685506628 2 479.72723388671875 MULTI HCD FTMS 0 0 0 8124 4899.01953125 0.16470944221286454 5 -0.15179443359375 6 Carbamidomethyl (C),Oxidation (M) _VSHPVC(Carbamidomethyl (C))M(Oxidation (M))I_ REV__ENSG00000112414|ENST00000367609|ADGRG6;REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF;REV__ENST00000545477.1_1_6:142630681-142703096:+|nuORF;REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6;REV__nc|ENSG00000112414|Q86SQ4-4|ADGRG6;REV__nc|ENSG00000112414|Q86SQ4|ADGRG6 5.230669730166228 0.5342319408533849 1 K 1 -1 6.9897 0 0 0.73004 0 0 185.980235349294 640.3425387018186 826.3227740511127 0 0 0 0 0 0 0 0 0 K 0.73004 - 21 + NaN NaN 97072 NaN 5811 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8131 42.774 NaN 143580 35 0 9296 0.261 + 13215 KYLYVDKNF 9 46 595.3164705772219 1188.6183882212438 2 595.3165283203125 MULTI HCD FTMS 0 0 0 8124 56361.38671875 0.2846881107218066 -4 0.11226272583007812 7 Unmodified _KYLYVDKNF_ ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant 88.36371040165146 0.004568843997105255 1 KY{I|L}YVDKN{M(Oxidation (M))|F} 9 0 + 92.362 0 0 7.7705 7.7705 94.383 0 0 0 71.39252201045579 13.697114610913488 13.697114610913488 22.276296993281406 0 2.9049471895720984 0 0.3054621874040891 1.4674165578762484 + + KY{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKGG{M(Oxidation (M))|F};[YK]{I|L}YVDNK{M(Oxidation (M))|F};[YK]{I|L}YVDGGK{M(Oxidation (M))|F};[YK][{M(Oxidation (M))|F}E][{I|L}T]KN{M(Oxidation (M))|F};[YK][{M(Oxidation (M))|F}E][{I|L}T]NK{M(Oxidation (M))|F} 7.7705;5.8964;5.1217;4.6955;3.9209;2.5106;1.3098 +;+;-;-;-;-;- + 250 + NaN NaN 118711 NaN 5812 2317 8124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8133 42.779 NaN 1163100 35 0 129870 0.327 + 25184 SANLEEVTM 9 75 505.22905588523105 1008.4435588372621 2 505.2289123535156 MULTI HCD FTMS 0 0 0 8132 636423.875 0.8870819701150731 -3 0.08259963989257812 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 165.7202790778711 6.154960448002056E-09 1 {[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F} 9 0 + 99.65 0 0 9.8816 9.8816 96.882 0 0 0 11.584369510877849 81.30665784108606 11.584369510877849 21.197887582883936 0 2.6549471895720984 0 1.6496498648046138 1.1989700043360187 + + {[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F};{[SA]|[TG]}GG{I|L}EEVT{M(Oxidation (M))|F};{[SA]|[TG]}[Q{I|L}]DEVT{M(Oxidation (M))|F};[PS][KS]DEVT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}S{[QG]|[NA]}EVT{M(Oxidation (M))|F};[NS]A{I|L}EEVT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F}E{I|L}N{[SA]|[TG]};[{M(Oxidation (M))|F}T]VEE{I|L}N{[SA]|[TG]} 9.8816;7.7795;7.7415;7.3518;6.5386;6.3462;0.51336;0.48243 +;-;-;-;-;-;-;- + 908 NaN NaN 258119.7 NaN 5813 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8134 42.784 NaN 385600 35 0 72486 0.261 + 14649 LGHEEDYAL 9 59 523.7431222587439 1045.4716915842878 2 523.7427978515625 MULTI HCD FTMS 0 0 0 8132 297592.625 0.6176980667722264 3 -0.09239578247070312 2 Unmodified _LGHEEDYAL_ ENSG00000100077|ENST00000324198|GRK3;ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF 42.09456458481378 0.05572955244001856 1 DYA{I|L} 4 5 44.483 0 0 4.2548 0 0 565.2480588305722 0 565.2480588305722 0 21.550697163554986 0 0 0 0.8494850021680094 0 0.7059771852360797 0 + DYA{I|L} 4.2548 + + 148 NaN NaN 147927.2 NaN 5814 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8135 42.787 NaN 207720 35 0 32593 0.261 + 5056 FDSDVGVYR 9 44 529.2511674035553 1056.4877818739105 2 529.2509155273438 MULTI HCD FTMS 0 0 0 8132 89066.796875 0.1176797246047432 8 -0.23430633544921875 3 Unmodified _FDSDVGVYR_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF 82.5293158979368 0.005033931517079822 1 {[{M(Oxidation (M))|F}D]|MM}SDVRYR 8 2 {[{M(Oxidation (M))|F}D]|MM} + + 60.923 5.2288 1.995 5.7665 5.7665 62.924 0 0 0 0 42.96388461952553 0 0 0 2.1549471895720984 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}SDVRYR 5.7665 - 168 + NaN NaN 120657.7 NaN 5815 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8136 42.791 NaN 221490 35 0 18289 0.261 + 30529 VMSQALKATF 10 58 556.2943919492278 1110.5742309652555 2 556.2941284179688 MULTI HCD FTMS 0 0 0 8132 107422.4140625 0.29898367370333717 -4 0.10897445678710938 4 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 76.41605946988834 0.009982875570622314 1 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 89.563 0 0 8.0645 8.0645 90.855 0 0 0 4.7564996996458575 83.10911268361153 4.7564996996458575 9.164539485499262 0 3.6237125054200234 0 0.7742275032520141 0 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[VG][VG]KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}[TA]K{M(Oxidation (M))|F} 8.0645;7.2393;5.7674;5.5315;4.9422 +;-;-;-;- + 863 NaN NaN 129106.2 NaN 5816 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8137 42.794 NaN 192790 35 0 15445 0.462 + 13216 KYLYVDKNF 9 49 595.3164705772219 1188.6183882212438 2 595.31591796875 MULTI HCD FTMS 0 0 0 8132 115969.5703125 0.5857761810977946 -3 0.08259963989257812 5 Unmodified _KYLYVDKNF_ ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant 103.82355648334675 0.003950725192926219 1 KY{I|L}YVDK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9 0 + 92.375 0 0 7.7716 7.7716 95.826 0 0 0 83.50624418168366 7.3708934260475445 7.3708934260475445 48.016609670558594 0 2.5994850021680094 0 0.3252574989159953 1.7544321917401078 + + KY{I|L}YVDK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YK]{I|L}YVD{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K 7.7716;3.7319 +;- + 212 + NaN NaN 112229.6 NaN 5817 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8138 42.801 NaN 76958 35 0 8937.2 0.261 -1 HYMSINDSF 9 30 565.2346759331809 1128.4547989331618 2 565.2344970703125 MULTI HCD FTMS 0 0 0 8132 56589.3359375 0.8811410523206752 3 -0.09239578247070312 6 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 15.248480904072842 0.22861284681709862 1 TNDS{M(Oxidation (M))|F} 5 -1 45.573 0 0 4.0385 0 0 546.2186146466812 0 546.2186146466812 0 45.57319389984244 0 0 0 1 0 0 0 TNDS{M(Oxidation (M))|F} 4.0385 - 25 NaN NaN 110581.3 NaN 5818 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8139 42.804 NaN 54855 35 0 15353 0.261 -1 0 28 579.2930215653635 578.2857450987634 1 579.29248046875 MULTI HCD FTMS 0 0 0 8132 20454.814453125 0.4479987505665826 -10 0.2705841064453125 7 NaN NaN 1 {[WN]|[YH]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 + 7.4473 0 0 1.2878 1.2878 81.932 0 0 0 7.447274948966936 7.447274948966936 7.447274948966936 7.447274948966936 0 0 0 0 0 {[WN]|[YH]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.2878 - 1 NaN NaN 89206 NaN 5819 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8140 42.807 NaN 63875 35 0 11316 0.262 + 26516 SVKHLVYL 8 43 479.78740892864806 NaN 0 479.78759765625 PEAK HCD FTMS 0 0 0 8132 14273.65234375 0.6963911700300927 1 -0.03636932373046875 8 Unmodified _SVKHLVYL_ ENST00000400286.2_1_13:86373305-86373452:-|nuORF 13.50788311687929 0.38822285293237185 1 {I|L} 1 7 7.302 0 0 0.76257 0 0 583.3290770352274 258.12067590885005 841.4497529440775 0 0 0 0 0 0.3807196863200844 0 0 0 + {I|L} 0.76257 + + 5 + NaN NaN 94124.4 NaN 5820 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8141 42.811 NaN 61034 35 0 7613.5 0.261 + 23038 RDGFIDLMEL 10 41 403.5375799457654 NaN 0 403.5273742675781 PEAK HCD FTMS 0 0 0 8132 2172.78564453125 0.9390647707393734 -1 0.0263824462890625 9 Unmodified _RDGFIDLMEL_ ENSG00000115468|ENST00000264059|EFHD1;ENSG00000142634|ENST00000375980|EFHD2;nc|ENSG00000115468|Q9BUP0-2|EFHD1 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92744.2 NaN 5821 2318 8132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8143 42.816 NaN 1724700 35 0 427420 0.327 + 8987 HPEEGDLDL 9 75 512.7326878923853 1023.4508228515707 2 512.7325439453125 MULTI HCD FTMS 0 0 0 8142 1413736.5 0.9058271189609046 -2 0.06275177001953125 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 136.33342141710068 0.00022087650154924235 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 85.628 0 0 8.3666 8.3666 90.998 0 0 0 4.137342758552691 18.328956512079344 4.137342758552691 8.57840941039747 0 2.4802046884880937 0 1.524227503252014 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};[EP]HEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L};AYEE{[RE]|[WV]}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEE{I|L}PH;{NN|[MP]|[D{I|L}]|[EV]}DGE{I|L}EPH;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEG{[TV]|[{I|L}S]}QQ;{[QV]|[N{I|L}]|[RA]|[KV]}EE[YE]D{I|L};[EP]{[CA]|SS}EE{I|L}PH;{NN|[MP]|[D{I|L}]|[EV]}DAA[YT]QQ 8.3666;7.5284;5.3419;4.5361;4.4076;3.7957;2.5538;1.3396;0.93079;0.38027 +;-;-;-;-;-;-;-;-;- + 780 NaN NaN 345503.7 NaN 5822 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8144 42.82 NaN 154130 35 0 10931 0.261 -1 SFHVLKNEM 9 68 560.7769986000222 NaN 0 560.7653198242188 PEAK HCD FTMS 0 0 0 8142 8039.03515625 1 0 0 2 Oxidation (M) _SFHVLKNEM(Oxidation (M))_ ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67 11.640296217721598 0.23883959125015683 1 QQ{I|L}QTM 6 -1 19.672 0 0 1.7571 0 0 131.0307907046901 256.1296480768188 387.1604387815089 0 0 0 0 0 0 0 0.3252574989159953 0 QQ{I|L}QTM 1.7571 - 294 + NaN NaN 107184.7 NaN 5823 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8145 42.824 NaN 63614 35 0 7428.3 0.261 + 11904 KFIDTTSKF 9 32 543.79515636783 1085.57575980246 2 544.2965698242188 MULTI HCD FTMS 0 0 0 8142 37301.5859375 0.007037757555881287 119 -3.357025146484375 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 16.565877749689598 0.21723083036893404 1 SK{M(Oxidation (M))|F} 3 6 23.984 0 0 2.2094 0 0 705.3725453107437 0 705.3725453107437 0 3.0153844027245924 0 0 0 0 0 0.3807196863200844 0 + SK{M(Oxidation (M))|F} 2.2094 + + 4 NaN NaN 94035.5 NaN 5824 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8146 42.827 NaN 71908 35 0 8873.1 0.261 + 14380 LEETKMTTF 9 38 550.2694510467331 NaN 0 550.2850952148438 PEAK HCD FTMS 0 0 0 8142 6715.5927734375 0.7794125430847716 1 -0.02965545654296875 4 Unmodified _LEETKMTTF_ REV__ENSG00000182771|ENST00000327946|GRID1;REV__GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant 3.944395688203298 0.27613285122220627 1 EE 2 -1 10.969 0 0 0.99853 0 0 131.0617956814105 706.3541964166624 837.4159920980728 0 0 0 0 0 0 0 0 0 EE 0.99853 + + 5 + NaN NaN 96960.5 NaN 5825 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8147 42.83 NaN 61246 35 0 10119 0.261 + 35556 YYHARVYEF 9 26 624.2957334833595 1246.576914033519 2 624.295166015625 MULTI HCD FTMS 0 0 0 8142 26945.69140625 0.9068682537996431 -3 0.0924835205078125 5 Unmodified _YYHARVYEF_ ENSG00000108344|ENST00000264639|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3 7.945399516374404 0.2907850085234385 1 YYHA 4 5 21.198 0 0 1.7005 0 0 0 709.3286837213499 709.3286837213499 0.22878745280337398 0 0 0 0 0.5 0 0 0 + YYHA 1.7005 + + 5 + NaN NaN 110087.8 NaN 5826 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8148 42.834 NaN 33274 35 0 7612.8 0.261 -1 ISRRCWCQK 9 22 647.3186501761008 1292.6227474190016 2 647.3189697265625 MULTI HCD FTMS 0 0 0 8142 8385.2578125 0.09136588772934301 12 -0.3498802185058594 6 2 Carbamidomethyl (C) _ISRRC(Carbamidomethyl (C))WC(Carbamidomethyl (C))QK_ ENST00000442007.1_1_6:73985509-73985899:+|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108028.8 NaN 5827 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8149 42.837 NaN 39668 35 0 6517.4 0.261 + 6509 FPISDDRNSSV 11 29 618.7968135403453 1235.5790741474905 2 618.7969360351562 MULTI HCD FTMS 0 0 0 8142 22153.341796875 0.7820449008136362 -2 0.06275177001953125 7 Unmodified _FPISDDRNSSV_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B 6.1918466704503565 0.39176533041107 1 DS{I|L}[EP] 5 10 26.466 0 0 2.142 0 0 676.3155995099625 0 676.3155995099625 0 26.46591250700361 0 0 0 0.4247425010840047 0 0 0 DS{I|L}[EP] 2.142 - 8 NaN NaN 89787.5 NaN 5828 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8150 42.84 NaN 27829 35 0 4707.3 0.261 + -1 TYCVEYCFW 9 26 635.7496926014329 1269.4848322696657 2 635.7491455078125 MULTI HCD FTMS 0 0 0 8142 14655.0107421875 0.7558965470518398 1 -0.02965545654296875 8 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))VEYCFW_ REV__ENST00000356079.8_1_2:204131259-204131349:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89459.6 NaN 5829 2319 8142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8152 42.845 NaN 458510 35 0 44280 0.327 + 13046 KYLAHLEQL 9 84 557.8162374816234 1113.6179220300467 2 557.8162841796875 MULTI HCD FTMS 0 0 0 8151 242865.171875 0.8744532195853043 -1 0.02965545654296875 1 Unmodified _KYLAHLEQL_ ENSG00000162645|ENST00000370466|GBP2 139.78183599554657 1.962818552322152E-05 1 [YK]{I|L}AH{I|L}EQ{I|L} 9 0 + 90.587 0 0 8.1345 8.1345 90.274 0 0 0 7.92719286378599 10.580123568998644 7.92719286378599 7.92719286378599 0 2.329689690656103 0 0.3252574989159953 1.4194451763165201 + + [YK]{I|L}AH{I|L}EQ{I|L};[Y{I|L}]KAH{I|L}EQ{I|L};[YK]{I|L}AH{I|L}E[AG]{I|L};KY{I|L}AH{I|L}EQ{I|L};[Y{I|L}]KAH{I|L}E[AG]{I|L};[{M(Oxidation (M))|F}V][KT]H{I|L}EQ{I|L};[Q{I|L}]W[KG]{I|L}EQ{I|L};{I|L}YKAH{I|L}EQ{I|L};[{M(Oxidation (M))|F}V][KT]H{I|L}E[AG]{I|L};[Q{I|L}]W[KG]{I|L}E[AG]{I|L} 8.1345;7.4226;7.3076;7.1844;6.5958;6.2503;5.7349;5.7188;5.4234;4.9081 +;-;-;+;-;-;-;-;-;- + 2130 NaN NaN 159041.5 NaN 5830 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8153 42.85 NaN 137600 35 0 15699 0.262 + 19239 NKNEYIDCTIF 11 57 453.87994203616904 1358.617996708707 3 453.87994384765625 MULTI HCD FTMS 0 0 0 8151 39032.3515625 0.1200268231718456 42 -1.1736106872558594 2 Unmodified _NKNEYIDCTIF_ REV__tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1 10.315234532428624 0.3672054350828177 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.4376205874164 0 1037.4376205874164 0 3.226825097560422 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 - 35 + NaN NaN 99921.5 NaN 5831 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8154 42.853 NaN 120890 35 0 11490 0.261 + 3505 EIAEAYLGK 9 49 497.26600053547986 992.5174481377597 2 497.2655029296875 MULTI HCD FTMS 0 0 0 8151 40049.79296875 1 0 0 3 Unmodified _EIAEAYLGK_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 12.240655878213236 0.2545997876781172 1 {[QN]|[E{I|L}]|[KN]}AEAY{I|L}[KG] 9 0 + 38.874 0 0 3.9167 3.9167 89.065 0 0 0 28.416375079047505 7.147642715192511 7.147642715192511 38.87394998465425 0 0 0 0 0 + + {[QN]|[E{I|L}]|[KN]}AEAY{I|L}[KG] 3.9167 + + 53 + NaN NaN 108843.8 NaN 5832 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8155 42.857 NaN 68448 35 0 22163 0.261 -1 YPSEVEHMF 9 25 577.7448304990554 1153.4751080649107 2 577.7451171875 MULTI HCD FTMS 0 0 0 8151 12213.708984375 0.48867029788526917 1 -0.026371002197265625 4 Oxidation (M) _YPSEVEHM(Oxidation (M))F_ ENSG00000119630|ENST00000555567|PGF;ENST00000555234.1_1_14:75415208-75421922:-|nuORF;ENST00000556939.5_1_14:75415208-75421945:-|nuORF;nc|ENSG00000119630|P49763-2|PGF;nc|ENSG00000119630|P49763-4|PGF;nc|ENSG00000119630|P49763|PGF 10.823927491677226 0.26684000660059787 1 YP 2 -1 24.222 0 0 2.0999 0 0 0 890.3353365533811 890.3353365533811 17.231975075880328 0 0 0 0 0.3252574989159953 0 0 0 YP 2.0999 + + 17 + NaN NaN 97337.1 NaN 5833 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8156 42.86 NaN 81596 35 0 5984.1 0.261 + 4295 EVNQETIQRL 10 42 615.3280017756758 1228.6414506181516 2 615.3269653320312 MULTI HCD FTMS 0 0 0 8151 38744.9296875 0.9532295163860647 -2 0.0660247802734375 5 Unmodified _EVNQETIQRL_ ENSG00000008324|ENST00000011691|SS18L2 15.538449434065043 0.365770603482074 1 ET{I|L}QR{I|L} 6 4 32.396 0 0 2.6367 0 0 470.2115322605328 0 470.2115322605328 0 24.16895006820745 0 0 0 0.8494850021680094 0 0 0 + ET{I|L}QR{I|L} 2.6367 + + 30 + NaN NaN 103250.2 NaN 5834 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8157 42.863 NaN 37927 35 0 3349.5 0.261 + 28054 TGLEGNTLYH 10 28 552.7695162976828 1103.5244796621655 2 552.755126953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _TGLEGNTLYH_ ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5 1.6526216038709556 0.46655611578153744 1 C 1 10 3.0989 0 0 0.28082 0 0 850.5697505135312 146.92189966373283 997.491650177264 0 0 0 0 0 0 0 0 0 C 0.28082 - 5 + NaN NaN 85155.4 NaN 5835 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8158 42.867 NaN 28780 35 0 4828.8 0.261 + -1 MTPTRYDNF 9 22 580.7562680234499 1159.4979831136998 2 580.75537109375 MULTI HCD FTMS 0 0 0 8151 5704.466796875 0.18397583327748165 10 -0.2905006408691406 7 Oxidation (M) _M(Oxidation (M))TPTRYDNF_ REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__nc|ENSG00000140836|Q15911-2|ZFHX3 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88537.4 NaN 5836 2320 8151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8160 42.872 NaN 1215900 35 0 481890 0.327 + 8567 HATVATENEVF 11 47 609.2935442959097 1216.5725356586192 2 609.2935180664062 MULTI HCD FTMS 0 0 0 8159 760857.6875 0.7670070708143704 2 -0.059356689453125 1 Unmodified _HATVATENEVF_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 87.12335221954112 0.005855231244176575 1 VATENEV{M(Oxidation (M))|F} 8 3 100.39 0 0 8.2516 0 0 309.1428395001969 0 309.1428395001969 0 88.0178349383926 0 0 0 3.110924374808178 0 1.1237125054200234 0.6549471895720984 + VATENEV{M(Oxidation (M))|F} 8.2516 + + 616 NaN NaN 283165.8 NaN 5837 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8161 42.876 NaN 1567700 35 0 120620 0.262 + 538 APEEHPTLL 9 96 503.7640484757953 1005.5135440183906 2 503.7639465332031 MULTI HCD FTMS 0 0 0 8159 801304.8125 0.8230331975528442 -2 0.056026458740234375 2 Unmodified _APEEHPTLL_ ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2 156.15588289589118 2.3186882095317417E-06 1 APEEHPT{I|L}{I|L} 9 0 + 86.841 0 0 8.6365 8.6365 88.347 0 0 0 1.720201654764736 1.720201654764736 1.720201654764736 1.720201654764736 0 2.853917193908117 1.2218487496163564 1.8001648626366045 0 + + APEEHPT{I|L}{I|L};[PA]EEHPT{I|L}{I|L};[EP]AEHPT{I|L}{I|L};[EP]EAHPT{I|L}{I|L};[PA]EEH{I|L}[TP]{I|L};APEE[KS]A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[EP]AEH{I|L}[TP]{I|L};[EP]EAH{I|L}[TP]{I|L};[PA]E[HT][EP]{I|L}{I|L};APE[KT]DA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8.6365;8.4654;7.6123;7.365;5.9886;5.4069;5.1355;4.8882;4.8102;4.1947 +;+;-;-;-;-;-;-;-;- + 1468 + NaN NaN 339371.8 NaN 5838 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8162 42.88 NaN 348160 35 0 27553 0.261 -1 KMPKFKMPSF 10 73 419.5555857130238 1255.6449277392715 3 419.5556945800781 MULTI HCD FTMS 0 0 0 8159 178644.171875 0.6702286622611716 11 -0.32353973388671875 3 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 35.995811192298525 0.18015466441198996 1 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 -1 + 68.3 0 0 5.4394 5.4394 92.267 0 0 0 46.30993969293064 17.518572025801546 17.518572025801546 68.29963973629083 0 1.5387254899964358 0 0.3807196863200844 0 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 5.4394 + + 53 + NaN NaN 130166.9 NaN 5839 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8163 42.883 NaN 461570 35 0 135760 0.261 + 11513 IYRSDFWNF 9 46 416.5328933802519 1246.5768507409557 3 416.5328063964844 MULTI HCD FTMS 0 0 0 8159 166236.796875 0.9151081212146651 2 -0.059356689453125 4 Unmodified _IYRSDFWNF_ ENSG00000121871|ENST00000475390|SLITRK3 8.155526934196011 0.2891920862272901 1 E{M(Oxidation (M))|F} 2 8 28.711 0 0 2.3032 0 0 952.4566135781404 0 952.4566135781404 0 27.602131414518922 0 0 0 0.5 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 2.3032 - 15 NaN NaN 150567 NaN 5840 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8164 42.886 NaN 168030 35 0 20245 0.261 -1 HEVENCCD 8 50 531.6846773354623 1061.3548017377245 2 531.6846313476562 MULTI HCD FTMS 0 0 0 8159 53236.3515625 0.8736072273634804 1 -0.033016204833984375 5 2 Carbamidomethyl (C) _HEVENC(Carbamidomethyl (C))C(Carbamidomethyl (C))D_ ENST00000369878.8_1_10:104837250-104837358:+|nuORF 3.5964929083625545 0.5366564765791996 1 EV[{M(Oxidation (M))|F}T] 4 -1 9.9215 0 0 0.9348 0 0 567.14848525215 0 567.14848525215 0 -0.3393220009542812 -0.3393220009542812 0 0 0 0 0 0 EV[{M(Oxidation (M))|F}T] 0.9348 - 38 NaN NaN 109886.9 NaN 5841 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8165 42.89 NaN 82312 35 0 19928 0.261 + 25083 SADMSHVAL 9 25 465.72104254512186 929.4275321570437 2 465.7208251953125 MULTI HCD FTMS 0 0 0 8159 34727.40234375 0.24054877237049482 4 -0.11547470092773438 6 Unmodified _SADMSHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 13.90604991867851 0.24021115267848145 1 A{I|L} 2 7 19.464 0 0 2.0942 0 0 727.2962513654312 0 727.2962513654312 0 2.7815125038364386 0 0 0 0 0 0 0 + A{I|L} 2.0942 + + 8 NaN NaN 102069.3 NaN 5842 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8166 42.893 NaN 184330 35 0 26490 0.261 + 2740 DVYSDLNTQR 10 39 605.7887971574906 1209.5630413817812 2 605.788818359375 MULTI HCD FTMS 0 0 0 8159 92694.3671875 0.8345874430062055 -4 0.11877822875976562 7 Unmodified _DVYSDLNTQR_ ENSG00000011600|ENST00000262629|TYROBP;ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-2|TYROBP;nc|ENSG00000011600|O43914-3|TYROBP 93.92789965120151 0.0007009356749976282 1 [DV]YSD{I|L}NTQR 10 0 + 113.64 0 0 9.395 9.395 91.11 0 0 0 5.804996832377384 5.804996832377384 5.804996832377384 5.804996832377384 0 3.385151878060192 2 1.5669015600442577 0.7742275032520141 + + [DV]YSD{I|L}NTQR;[DV]YSD{I|L}NTAGR;[DV]YSD{I|L}GGTQR;[DV]YSD{I|L}GGTAGR;[VS]{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}NTAGR;[VS]{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}NTQR;[VS]{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}GGTAGR;[VS]{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}GGTQR 9.395;8.915;8.6373;8.1603;5.3824;5.0876;4.6277;4.3299 +;-;-;-;-;-;-;- + 271 + NaN NaN 125472 NaN 5843 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8167 42.896 NaN 61194 35 0 6007.3 0.261 + 3918 EPSEVFINR 9 33 545.7801606701761 1089.545768407152 2 545.7799072265625 MULTI HCD FTMS 0 0 0 8159 18023.865234375 0.10407721028447908 11 -0.32353973388671875 8 Unmodified _EPSEVFINR_ ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000121390|Q8WXF1-2|PSPC1 10.823927491677226 0.26684000660059787 1 V{M(Oxidation (M))|F}{I|L}[RN] 5 4 17.324 0 0 1.59 0 0 442.16852338937707 0 442.16852338937707 0 1.1263423094075407 0 0 0 0 0 0 0.28872548999643577 + V{M(Oxidation (M))|F}{I|L}[RN] 1.59 + + 30 + NaN NaN 91533.1 NaN 5844 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8168 42.9 NaN 25176 35 0 5495.8 0.261 + 24153 RYEKIEIMP 9 16 589.8153106192221 1177.6160683052442 2 589.8151245117188 MULTI HCD FTMS 0 0 0 8159 16411.1328125 0.033680957424415806 36 -1.0055160522460938 9 Unmodified _RYEKIEIMP_ ENSG00000104299|ENST00000521022|INTS9;ENST00000520316.5_1_8:28627126-28633440:-|nuORF;nc|ENSG00000104299|Q9NV88-2|INTS9;nc|ENSG00000104299|Q9NV88-3|INTS9 3.2813086475875832 0.32614229037259 1 {[QN]|[E{I|L}]|[KN]}[YR]KE 6 7 16.923 0 0 1.4371 0 0 0 356.1666413855755 356.1666413855755 16.92348741261036 0 0 0 0 0.4247425010840047 0 0 0 {[QN]|[E{I|L}]|[KN]}[YR]KE 1.4371 - 8 NaN NaN 93745 NaN 5845 2321 8159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8170 42.905 NaN 382430 35 0 39767 0.327 + 5675 FPAEAGRDTL 10 50 538.772146697701 1075.529740462202 2 538.7721557617188 MULTI HCD FTMS 0 0 0 8169 132542.96875 0.908298547032845 2 -0.059383392333984375 1 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 55.23464941255904 0.058752269732683056 1 {I|L}MAEA 5 7 73.276 0 0 6.813 0 0 0 557.2688450184891 557.2688450184891 53.81228130928562 0 0 0 0 1.6549471895720984 1.6989700043360187 0.805462187404089 0 {I|L}MAEA 6.813 - 212 + NaN NaN 145056.2 NaN 5846 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8171 42.909 NaN 165940 35 0 12641 0.261 -1 GTFAMAWTM 9 54 516.2198500942245 1030.425147255249 2 516.2197875976562 MULTI HCD FTMS 0 0 0 8169 69938.6171875 0.7781592308098846 5 -0.1453094482421875 2 Oxidation (M) _GTFAMAWTM(Oxidation (M))_ ENST00000353917.9_1_20:43929601-43932870:-|nuORF 14.838274106304384 0.23215694253501695 1 {[SA]|[TG]}N{I|L} 4 -1 24.737 0 0 2.4007 0 0 0 642.2068676189217 642.2068676189217 0.22878745280337398 0 0 0 0 1.1549471895720984 0 0 0 {[SA]|[TG]}N{I|L} 2.4007 - 153 + NaN NaN 105244.7 NaN 5847 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8172 42.913 NaN 113110 35 0 23867 0.261 -1 NPDEFYYKM 9 34 611.7579230907169 1221.5012932482337 2 611.7567749023438 MULTI HCD FTMS 0 0 0 8169 15761.009765625 0.15913351512049376 8 -0.23111343383789062 3 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 3.5964929083625545 0.32375295897743744 1 {I|L} 1 -1 5.4846 0 0 0.449 0 0 150.02907784385872 955.3730013001697 1105.4020791440284 0 0 0 0 0 0 0 0 0 {I|L} 0.449 - 3 + NaN NaN 105132 NaN 5848 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8173 42.916 NaN 34099 35 0 6324.9 0.261 + 6510 FPISDDRNSSV 11 20 618.7968135403453 1235.5790741474905 2 618.7952880859375 MULTI HCD FTMS 0 0 0 8169 23604.0703125 0.8332577087282194 1 -0.026340484619140625 4 Unmodified _FPISDDRNSSV_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B 8.444304893310646 0.381886813817475 1 DS{I|L}PE 5 10 39.196 0 0 3.1723 0 0 676.3165150373062 0 676.3165150373062 0 39.195925227640984 0 0 0 0.4247425010840047 0 0 0 DS{I|L}PE 3.1723 - 11 NaN NaN 96034.8 NaN 5849 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8174 42.919 NaN 44047 35 0 8632.1 0.261 + -1 CVMHVRLEM 9 29 575.2656520045246 1148.516751075849 2 575.2657470703125 MULTI HCD FTMS 0 0 0 8169 26131.99609375 0.9338924485247249 1 -0.026340484619140625 5 2 Oxidation (M) _CVM(Oxidation (M))HVRLEM(Oxidation (M))_ REV__ZBTB48|p.S371C|1|0.22|ENSG00000204859|chr1:6586762-6586762|C/G|missense_variant 14.838274106304384 0.23215694253501695 1 {I|L}E{M(Oxidation (M))|F} 3 -1 30.445 0 0 2.6508 0 0 741.3461170880875 0 741.3461170880875 0 24.960762528683702 0 0 0 0.4247425010840047 0 0 0 {I|L}E{M(Oxidation (M))|F} 2.6508 + + 11 NaN NaN 101194.6 NaN 5850 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8175 42.923 NaN 37567 35 0 5389.4 0.261 + 29921 VFDVSHNAV 9 28 494.2483896659981 986.4822263987962 2 494.24859619140625 MULTI HCD FTMS 0 0 0 8169 8358.533203125 0.41071673641556744 -2 0.05938720703125 6 Unmodified _VFDVSHNAV_ ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A 9.38312468134398 0.279288223203164 1 EV 2 8 25.969 0 0 2.6325 0 0 740.3480091779312 0 740.3480091779312 0 23.494850021680094 0 0 0 0.5 0 0 0 EV 2.6325 - 4 NaN NaN 100797.1 NaN 5851 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8176 42.926 NaN 55833 35 0 8384.3 0.261 + 33013 YAYFAFHY 8 33 541.2400726192496 NaN 0 541.2396850585938 PEAK HCD FTMS 0 0 0 8169 25713.91796875 1 0 0 7 Unmodified _YAYFAFHY_ REV__ENSG00000182087|ENST00000356663|TMEM259;REV__ENST00000592618.5_1_19:1010351-1011343:-|nuORF 6.354104778181461 0.38822285293237185 1 A 1 -1 6.9897 0 0 0.64692 0 0 234.02786144768044 772.3773897760374 1006.4052512237179 0 0 0 0 0 0 0 0 0 A 0.64692 + + 8 + NaN NaN 92824.4 NaN 5852 2322 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8178 42.931 NaN 513160 35 0 46445 0.327 + 30530 VMSQALKATF 10 75 556.2943919492278 1110.5742309652555 2 556.2943725585938 MULTI HCD FTMS 0 0 0 8177 323480 0.9003264319984943 1 -0.03304290771484375 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 168.90229379071172 4.458989702618133E-11 1 V{M(Oxidation (M))|F}SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 117.14 0 0 10.548 10.548 93.299 0 0 0 95.45670675372754 16.53212513775344 16.53212513775344 9.164539485499247 0 3.6549471895720984 0 2.1791746928241125 0.3494850021680094 + + V{M(Oxidation (M))|F}SQA{I|L}KAT{M(Oxidation (M))|F};V{M(Oxidation (M))|F}S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}K[YG]V;[{M(Oxidation (M))|F}V]S[AG]A{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA[TA]{I|L}K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}K[YG]V;V{[QG]|[NA]}[{M(Oxidation (M))|F}T]{I|L}KAT{M(Oxidation (M))|F} 10.548;9.7224;9.5841;8.7588;6.8362;6.4336;6.011;5.7721;5.6084;5.5871 +;-;+;-;-;-;-;-;-;- + 1380 + NaN NaN 155419.2 NaN 5853 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8179 42.935 NaN 160240 35 0 13436 0.261 + 13217 KYLYVDKNF 9 38 595.3164705772219 1188.6183882212438 2 595.3162841796875 MULTI HCD FTMS 0 0 0 8177 127555.8046875 0.6442996377873633 2 -0.056118011474609375 2 Unmodified _KYLYVDKNF_ ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant 88.36371040165146 0.004568843997105255 1 KY{I|L}YVDKN{M(Oxidation (M))|F} 9 0 + 89.747 0 0 7.5506 7.5506 93.329 0 0 0 64.53070327321406 13.384767769392738 13.384767769392738 16.620768972555595 0 2.860924374808178 0 0 1.555462187404089 + + KY{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKGG{M(Oxidation (M))|F};[YK]{I|L}YVDNK{M(Oxidation (M))|F};KY{I|L}YV[{M(Oxidation (M))|F}T]QQ;[YK]{I|L}YVDGGK{M(Oxidation (M))|F};KY[KC]V[RH]QQ 7.5506;6.1522;5.3775;5.2884;4.5855;4.5137;2.8094 +;+;-;-;-;-;- + 245 + NaN NaN 107429.9 NaN 5854 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8180 42.939 NaN 362750 35 0 49459 0.261 + 1258 AYLSKAMEI 9 55 521.2692893832807 1040.5240258333613 2 521.2673950195312 MULTI HCD FTMS 0 0 0 8177 117354.078125 0.9897460918518186 -3 0.08572769165039062 3 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ ENSG00000124784|ENST00000379834|RIOK1 61.60191391372663 0.015340508911304802 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMSE{I|L} 9 2 + 75.459 0 0 7.2521 7.2521 92.241 0 0 0 20.461434083857526 57.50054049070357 20.461434083857526 13.486446888048107 0 1.555462187404089 2 0.2614393726401688 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[TA]S{I|L}C{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KSSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[TA]SVVM;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[{M(Oxidation (M))|F}V][WR];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{[RE]|[WV]}M 7.2521;5.9559;5.2791;4.2985;4.0092;2.7069 -;-;-;-;-;- 258 NaN NaN 145558.9 NaN 5855 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8181 42.942 NaN 360860 35 0 42293 0.261 + 32420 WAGNEVELE 9 59 523.7431222587439 1045.4716915842878 2 523.7427978515625 MULTI HCD FTMS 0 0 0 8177 75661.40625 0.15704658127832655 8 -0.2344970703125 4 Unmodified _WAGNEVELE_ REV__ENSG00000008226|ENST00000308059|DLEC1;REV__nc|ENSG00000008226|Q9Y238-3|DLEC1 16.942295170755138 0.21397866736869717 1 EEEVK 5 -1 25.45 0 0 2.4343 0 0 150.04147713281446 278.11472498111567 428.15620211393014 0 0 0 0 0 0 0 0.28872548999643577 0 EEEVK 2.4343 - 314 + NaN NaN 142556.5 NaN 5856 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8182 42.946 NaN 110510 35 0 16643 0.261 + 32532 WHLGMLGDE 9 37 529.240918997299 NaN 0 529.2510375976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _WHLGMLGDE_ REV__ENST00000375353.4_1_13:114519114-114519489:+|nuORF 7.910154910731844 0.25691533546754686 1 DSDVR 5 -1 24.68 0 0 2.3361 0 0 147.04780371549788 334.15159021549067 481.19939393098855 0 0 0 0 0 0 0 0.4247425010840047 0 DSDVR 2.3361 - 33 + NaN NaN 102972.6 NaN 5857 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8183 42.949 NaN 182160 35 0 19171 0.261 -1 RYLSPKYIKMF 11 57 487.93555575279356 1460.7848378585807 3 487.9355163574219 MULTI HCD FTMS 0 0 0 8177 29695.681640625 0.09320518494905779 -33 0.9468765258789062 6 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 10.016264844850085 0.3698103677728216 1 K 1 -1 10.485 0 0 0.71773 0 0 312.1134481501504 1017.5456637018186 1329.659111851969 0 0 0 0 0 0.3494850021680094 0 0 0 K 0.71773 + + 46 + NaN NaN 110435.7 NaN 5858 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8184 42.952 NaN 184010 35 0 33063 0.261 + 13153 KYLPESNTL 9 55 532.7848816455653 1063.5552103579305 2 532.784423828125 MULTI HCD FTMS 0 0 0 8177 43106.76953125 0.6584482748847601 -1 0.026340484619140625 7 Unmodified _KYLPESNTL_ ENST00000269033.7_1_17:28011643-28257046:-|nuORF;ENST00000324677.11_1_17:28011643-28088245:-|nuORF 23.789781309258295 0.1548179064208189 1 ET{I|L} 3 6 25.49 0 0 2.3966 0 0 702.3819447248062 0 702.3819447248062 0 15.00508444608478 0 0 0 0.3807196863200844 0 0 0 ET{I|L} 2.3966 - 15 NaN NaN 113269.7 NaN 5859 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8185 42.956 NaN 56988 35 0 14530 0.261 + 29542 TYYAQEERD 9 19 587.7528998715208 NaN 0 587.7640991210938 PEAK HCD FTMS 0 0 0 8177 4005.077880859375 0.7732481155234112 -1 0.026340484619140625 8 Unmodified _TYYAQEERD_ REV__CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;REV__ENSG00000081138|ENST00000397968|CDH7 5.731851221503515 0.26747109115447115 1 YV 2 -1 19.464 0 0 1.6586 0 0 746.3127627783946 162.02303491763908 908.3357976960336 0 0 0 0 0 1 0 0 0 YV 1.6586 - 12 + NaN NaN 112342.8 NaN 5860 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8186 42.959 NaN 87074 35 0 13461 0.261 + 9201 HPLMYNSIY 9 34 569.2733363548385 1136.532119776477 2 569.2730712890625 MULTI HCD FTMS 0 0 0 8177 32763.337890625 0.10491441123295997 41 -1.1472244262695312 9 Unmodified _HPLMYNSIY_ ENSG00000075223|ENST00000265361|SEMA3C 6.2057823575117 0.30397260197431997 1 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.745 0 0 0 752.3266085260374 752.3266085260374 25.713337517843655 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 - 14 + NaN NaN 97338.4 NaN 5861 2323 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8188 42.964 NaN 1644800 35 0 404750 0.327 + 8988 HPEEGDLDL 9 63 512.7326878923853 1023.4508228515707 2 512.7325439453125 MULTI HCD FTMS 0 0 0 8187 1323074.875 0.8477372566887882 3 -0.08592605590820312 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 136.33342141710068 0.00022087650154924235 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 85.913 0 0 8.3944 8.3944 92.918 0 0 0 4.762036441594191 27.69090027986372 4.762036441594191 9.449911167586478 0 2.5356668758921828 0 1.5484550065040281 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};[EP]HEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEEPH{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEE{I|L}PH;{NN|[MP]|[D{I|L}]|[EV]}DGEEP{I|L}H;{NN|[MP]|[D{I|L}]|[EV]}DGE{I|L}EPH;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEG{[TV]|[{I|L}S]}QQ;[EP]{[CA]|SS}EEPH{I|L};[EP]{[CA]|SS}EE{I|L}PH 8.3944;7.4711;5.3892;4.2923;3.4885;3.4111;3.2717;2.5817;0.9922;0.18837 +;-;-;-;-;-;-;-;-;- + 600 NaN NaN 338003.2 NaN 5862 2324 8187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8189 42.969 NaN 482770 35 0 102730 0.261 + 25681 SIENPRLL 8 67 471.2739375195412 940.5333221058825 2 471.25970458984375 MULTI HCD FTMS 0 0 0 8187 19453.435546875 0.6640724915562131 1 -0.023075103759765625 2 Unmodified _SIENPRLL_ REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF;REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 9.347437153973935 0.5250182646323369 1 {[TV]|[{I|L}S]}VEQVW 7 -1 19.551 0 0 2.0788 0 0 0 96.07424255693971 96.07424255693971 13.865105468912555 0 0 0 0 0 1.3010299956639813 0 0 {[TV]|[{I|L}S]}VEQVW 2.0788 - 55 NaN NaN 155935.3 NaN 5863 2324 8187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8190 42.972 NaN 99093 35 0 7367.6 0.261 + 15314 LPAPPTQNM 9 53 492.74424673437704 NaN 0 492.7444152832031 PEAK HCD FTMS 0 0 0 8187 29410.6796875 0.5891763908255389 1 -0.023075103759765625 3 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ ENSG00000141380|ENST00000415083|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant 43.85829265575387 0.06590164363483184 1 NQ[TP]PA 6 7 16.476 0 0 1.6753 0 0 165.0445714943416 207.11335169010002 372.15792318444164 0 0 0 0 0 1.274227503252014 0 0 0 NQ[TP]PA 1.6753 - 92 + NaN NaN 98904.2 NaN 5864 2324 8187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8191 42.975 NaN 280110 35 0 36300 0.261 + 190 AETGKFLDL 9 66 497.26600053547986 992.5174481377597 2 497.25360107421875 MULTI HCD FTMS 0 0 0 8187 30994.1328125 0.7738899633434825 4 -0.11563873291015625 4 Unmodified _AETGKFLDL_ REV__ENST00000445194.2_1_20:29874377-29874470:-|nuORF 19.256988751693697 0.19398022840297344 1 N{I|L} 2 -1 14.464 0 0 1.4573 0 0 149.1301079805201 613.238866307019 762.368974287539 0 0 0 0 0 0 0 0 0.3494850021680094 N{I|L} 1.4573 - 309 + NaN NaN 134731.2 NaN 5865 2324 8187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8192 42.979 NaN 127060 35 0 8901.1 0.261 + 14162 LAGSYVNRQI 10 60 560.8090483662676 1119.603543799335 2 560.8270263671875 MULTI HCD FTMS 0 0 0 8187 20665.515625 0.02660121839293518 24 -0.6692237854003906 5 Unmodified _LAGSYVNRQI_ REV__ENST00000511708.1_1_4:83956843-83956915:+|nuORF 16.149105407346934 0.3600587335443843 1 Q{I|L}QQ{I|L} 5 -1 30.675 0 0 2.7398 0 0 491.24522597480626 0 491.24522597480626 0 21.53335040558744 0 0 0 0.3252574989159953 0 0 0 Q{I|L}QQ{I|L} 2.7398 - 248 NaN NaN 102783.7 NaN 5866 2324 8187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8193 42.982 NaN 41340 35 0 4950.2 0.261 + 1896 CYSTPSGCLEL 11 24 586.7515372589477 1171.4885215846953 2 586.75146484375 MULTI HCD FTMS 0 0 0 8187 24003.576171875 0.8013797614854982 -1 0.03304290771484375 6 Unmodified _CYSTPSGCLEL_ ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000273136|ENST00000620612|NBPF26;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000162825|P0DPF2|NBPF20;nc|ENSG00000269713|P0DPF3-2|NBPF9;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000273136|B4DH59|NBPF26 8.155526934196011 0.3831532958467648 1 YPDE 4 8 33.175 0 0 2.8319 0 0 0 664.2779635065061 664.2779635065061 33.17532531436136 0 0 0 0 0.4247425010840047 0 0 0 YPDE 2.8319 - 24 + NaN NaN 92930.2 NaN 5867 2324 8187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8195 42.987 NaN 525750 35 0 86065 0.327 + 3164 EAVKVEEEL 9 66 523.2741307670476 1044.5337086008951 2 523.27392578125 MULTI HCD FTMS 0 0 0 8194 354141.40625 1 0 0 1 Unmodified _EAVKVEEEL_ ENSG00000137975|ENST00000370565|CLCA2 99.75527289724121 0.004270341300239591 1 {[CP]|[EA]}VK{NN|[MP]|[D{I|L}]|[EV]}EE{I|L} 9 0 + 50.001 0 0 4.7869 4.7869 81.818 0 0 0 22.420752085396956 2.9960394049525974 2.9960394049525974 1.741115296921265 0 1.677825934852436 0 1.610924374808178 0 + + {[CP]|[EA]}VK{NN|[MP]|[D{I|L}]|[EV]}EE{I|L};{[QN]|[E{I|L}]|[KN]}EEVKGE{I|L};EEE{I|L}VKGE{I|L};EE{I|L}EVKGE{I|L};{[QN]|[E{I|L}]|[KN]}ED{I|L}KGE{I|L};{[QN]|[E{I|L}]|[KN]}EDK{I|L}GE{I|L};{[QN]|[E{I|L}]|[KN]}EK[VG]EE{I|L};{[CP]|[EA]}V{[TV]|[{I|L}S]}[VG]EE{I|L};{[QN]|[E{I|L}]|[KN]}EKD{I|L}GE{I|L};{[CP]|[EA]}V{[TV]|[{I|L}S]}D{I|L}GE{I|L} 4.7869;4.6202;3.9974;3.8752;3.8368;3.8368;3.8081;3.7959;3.7813;3.769 +;-;-;-;-;-;-;-;-;- + 1490 + NaN NaN 173613.8 NaN 5868 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8196 42.992 NaN 51570 35 0 7952.7 0.261 + 11906 KFIDTTSKF 9 26 543.7953581245174 NaN 0 543.7950439453125 PEAK HCD FTMS 0 0 0 8194 52865.8359375 0.665456057044033 -13 0.37288665771484375 2 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 24.881564428377168 0.15463211837067886 1 {M(Oxidation (M))|F}{I|L}DG 4 6 30.745 0 0 2.8322 0 0 128.0940725881223 522.2476900690061 650.3417626571284 0 0 0 0 0 0.4247425010840047 0 0.805462187404089 0 {M(Oxidation (M))|F}{I|L}DG 2.8322 - 19 + NaN NaN 87828.6 NaN 5869 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8197 42.995 NaN 46030 35 0 5086.1 0.261 + 7980 GESSFTYRAY 10 29 590.7671488337442 1179.5197447342882 2 590.7669067382812 MULTI HCD FTMS 0 0 0 8194 37317.8203125 0.6031336508172205 -3 0.08245849609375 3 Unmodified _GESSFTYRAY_ ENSG00000139218|ENST00000369367|SCAF11 16.565877749689598 0.3561603856738253 1 S{M(Oxidation (M))|F}TYRAY 7 3 40.974 0 0 3.4738 0 0 273.09470918916946 0 273.09470918916946 0 40.97373228030179 0 0 0 0.7742275032520141 0 0 0 + S{M(Oxidation (M))|F}TYRAY 3.4738 + + 28 + NaN NaN 94018.3 NaN 5870 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8198 42.998 NaN 34037 35 0 5750 0.261 + 14836 LKEMFMWWA 9 25 621.2955915109287 1240.5766300886573 2 621.2942504882812 MULTI HCD FTMS 0 0 0 8194 23300.01171875 1 0 0 4 Unmodified _LKEMFMWWA_ REV__ENST00000225726.9_1_17:61823269-61823485:-|nuORF 1.844237919475145 0.33703635659052655 1 G 1 -1 6.9897 0 0 0.56342 0 0 376.6804031372886 803.8606661432249 1180.5410692805135 0 0 0 0 0 0 0 0 0 G 0.56342 - 3 + NaN NaN 89217.3 NaN 5871 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8199 43.002 NaN 22414 35 0 6850.3 0.261 -1 RYKLYQEMF 9 15 647.3186152268643 NaN 0 647.3187866210938 PEAK HCD FTMS 0 0 0 8194 4363.34814453125 0.22993067397987324 -3 0.08245849609375 5 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89280.5 NaN 5872 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8200 43.005 NaN 40155 35 0 6768.5 0.264 + -1 VHCLCIVI 8 21 478.7554341624108 NaN 0 478.75592041015625 PEAK HCD FTMS 0 0 0 8194 11173.982421875 0.015774770011937153 52 -1.4672470092773438 6 Carbamidomethyl (C) _VHC(Carbamidomethyl (C))LCIVI_ REV__ENSG00000137216|ENST00000323267|TMEM63B 6.354104778181461 0.38822285293237185 1 V 1 -1 11.99 0 0 1.2548 0 0 131.0944857685484 722.3107393854124 853.4052251539608 0 0 0 0 0 0.5 0 0 0 V 1.2548 + + 1 + NaN NaN 90608.4 NaN 5873 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8201 43.008 NaN 28392 35 0 5680.9 0.261 + -1 QVMSQMWDL 9 21 598.2597016538766 NaN 0 598.3151245117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))QVMSQM(Oxidation (M))WDL_ REV__ENST00000420851.6_1_3:195435625-195438442:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90894.5 NaN 5874 2325 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8203 43.014 NaN 1184800 35 0 90682 0.327 + 539 APEEHPTLL 9 83 503.7640484757953 1005.5135440183906 2 503.7638244628906 MULTI HCD FTMS 0 0 0 8202 593225.8125 0.6093118744781768 3 -0.09252548217773438 1 Unmodified _APEEHPTLL_ ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2 156.15588289589118 2.3186882095317417E-06 1 [PA]EEHPT{I|L}{I|L} 9 0 + 90.205 0 0 8.971 8.971 88.639 0 0 0 1.2729997405493236 1.2729997405493236 1.2729997405493236 1.2729997405493236 0 2.1861818737241734 1.3979400086720375 1.2302046884880937 0 + + [PA]EEHPT{I|L}{I|L};APEEHPT{I|L}{I|L};[EP]AEHPT{I|L}{I|L};[EP]EAHPT{I|L}{I|L};[PA]EEH{I|L}[TP]{I|L};APEE[KS]A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[YC]|[HE]}E[PA]PT{I|L}{I|L};[EP]AEH{I|L}[TP]{I|L};[PA]E[HT][EP]{I|L}{I|L};[EP]EAH{I|L}[TP]{I|L} 8.971;8.8444;7.8762;7.3224;6.5647;5.6845;5.5225;5.4699;5.1915;4.9161 +;+;-;-;-;-;-;-;-;- + 835 NaN NaN 269353.6 NaN 5875 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8204 43.018 NaN 344140 35 0 129620 0.261 + 8568 HATVATENEVF 11 40 609.2935442959097 1216.5725356586192 2 609.2932739257812 MULTI HCD FTMS 0 0 0 8202 196881.84375 0.1984730768343851 7 -0.20465469360351562 2 Unmodified _HATVATENEVF_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 37.771325159832564 0.15130342846161757 1 ATE{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F} 7 4 61.726 0 0 5.0738 0 0 408.21272475410314 0 408.21272475410314 0 60.13251345633968 0 0 0 2.274227503252014 0 0.4247425010840047 0 + ATE{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F} 5.0738 + + 75 NaN NaN 143736.5 NaN 5876 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8205 43.022 NaN 91285 35 0 32235 0.264 + 4359 EWEERRRQN 9 26 434.88204968672255 NaN 0 434.88201904296875 PEAK HCD FTMS 0 0 0 8202 71221.953125 0.7082108365989634 101 -2.8461532592773438 3 Unmodified _EWEERRRQN_ chr19:47272161-47273357|522|52.63|0.0|22.33|+|ENST00000643617|CCDC9,CCDC9;ENSG00000105321|ENST00000221922|CCDC9 0.235843874597859 0.29410397576755687 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92466 NaN 5877 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8206 43.025 NaN 100430 35 0 13948 0.261 -1 TIGVDFEMERF 11 41 453.87994203616904 1358.617996708707 3 453.88006591796875 MULTI HCD FTMS 0 0 0 8202 29804.89453125 0.09165183911170742 48 -1.3615913391113281 4 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.11662792887243 0.40086653484894175 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.438017315932 0 1037.438017315932 0 2.188878426313252 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 28 + NaN NaN 99097.8 NaN 5878 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8207 43.028 NaN 136390 35 0 20838 0.261 + 8899 HPDAVVETSSL 11 47 577.7881165623909 1153.5616801915817 2 577.7879638671875 MULTI HCD FTMS 0 0 0 8202 47913.63671875 1 0 0 5 Unmodified _HPDAVVETSSL_ ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 14.405379775768559 0.3315678654765638 1 ETS{[TV]|[{I|L}S]} 5 6 34.521 0 0 2.9925 0 0 618.3116932599625 0 618.3116932599625 0 29.035984316004217 0 0 0 1.2302046884880937 0 0 0 + ETS{[TV]|[{I|L}S]} 2.9925 + + 15 NaN NaN 95389 NaN 5879 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8208 43.032 NaN 50511 35 0 15481 0.261 + -1 HQDAMVMPML 10 19 602.761063777802 1203.5075746224038 2 602.7613525390625 MULTI HCD FTMS 0 0 0 8202 40647.109375 1 0 0 6 2 Oxidation (M) _HQDAMVM(Oxidation (M))PM(Oxidation (M))L_ REV__ENSG00000085382|ENST00000262903|HACE1;REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 5.731851221503515 0.44496410492002586 1 V{I|L} 2 -1 20.969 0 0 1.7423 0 0 973.3502064435562 0 973.3502064435562 0 8.979400086720375 0 0 0 0 0 0 0 V{I|L} 1.7423 - 6 NaN NaN 85371.1 NaN 5880 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8209 43.035 NaN 87085 35 0 10969 0.261 -1 KYIQEAEML 9 38 570.7839582995493 1139.5533636658986 2 570.7838745117188 MULTI HCD FTMS 0 0 0 8202 31021.12890625 0.3947746773413889 -4 0.10889434814453125 7 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 38.61474834105838 0.07170385841135779 1 QEAE{M(Oxidation (M))|F}{I|L} 6 -1 68.008 0 0 5.968 0 0 404.2415943830094 0 404.2415943830094 0 61.01850649356642 0 0 0 2.4247425010840047 0 0 0.2614393726401688 QEAE{M(Oxidation (M))|F}{I|L} 5.968 + + 49 NaN NaN 96449.5 NaN 5881 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8210 43.038 NaN 39326 35 0 8449.6 0.261 + -1 RKPSKLMCPP 10 23 615.3280017756758 1228.6414506181516 2 615.3274536132812 MULTI HCD FTMS 0 0 0 8202 8473.216796875 0.20846393101405564 4 -0.12221908569335938 8 Carbamidomethyl (C),Oxidation (M) _RKPSKLM(Oxidation (M))C(Carbamidomethyl (C))PP_ REV__ENSG00000104221|ENST00000220659|BRF2;REV__nc|ENSG00000104221|Q9HAW0-2|BRF2 1.4819007175156935 0.4674597685733628 1 M 1 -1 5.4846 0 0 0.44639 0 0 650.2673794285016 444.31186853580317 1094.5792479643048 0 0 0 0 0 0 0 0 0 M 0.44639 + + 3 + NaN NaN 88442.8 NaN 5882 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8211 43.042 NaN 31734 35 0 5151.6 0.264 + 16406 LSKILRAKKHK 11 28 441.29741524798993 NaN 0 441.2973327636719 PEAK HCD FTMS 0 0 0 8202 19065.6796875 0.3713518765777445 -10 0.2904205322265625 9 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 1 A 1 10 5.4846 0 0 0.62283 0 0 173.26809602156737 633.2635592096311 806.5316552311986 0 0 0 0 0 0 0 0 0 + A 0.62283 + + 1 + NaN NaN 91703.2 NaN 5883 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8212 43.045 NaN 91992 35 0 13503 0.261 + 5814 FPDAREQEI 9 40 552.7695162976828 1103.5244796621655 2 552.769287109375 MULTI HCD FTMS 0 0 0 8202 34175.00390625 0.12482688774963947 -21 0.6040496826171875 10 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 22.65808497894818 0.16459551161911185 1 DPE 3 7 31.198 0 0 2.8271 0 0 744.3763294904312 0 744.3763294904312 0 7.385606273598313 0 0 0 0.5 0 0 0 DPE 2.8271 - 41 NaN NaN 89135.1 NaN 5884 2326 8202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8214 43.05 NaN 265170 35 0 27408 0.327 -1 KMPKFKMPSF 10 66 419.5555857130238 1255.6449277392715 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8213 92953.5234375 0.3487385847077643 17 -0.48465728759765625 1 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 33.82136114134338 0.19902429369531874 1 KM[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PS{M(Oxidation (M))|F} 10 -1 + 49.306 0 0 3.9268 3.9268 89.469 0 0 0 32.22795589582779 14.50781977329818 14.50781977329818 49.30629977399013 0 1.1382104921644451 0 0 0 KM[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PS{M(Oxidation (M))|F} 3.9268 + + 41 + NaN NaN 128316.6 NaN 5885 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8215 43.054 NaN 344550 35 0 40685 0.261 + 5676 FPAEAGRDTL 10 54 538.772146697701 1075.529740462202 2 538.77197265625 MULTI HCD FTMS 0 0 0 8213 93250.2734375 0.6390311660624906 7 -0.19794464111328125 2 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 43.981846655682396 0.11085276043338313 1 AEAPE 5 7 55.45 0 0 5.1556 0 0 560.2901138519435 0 560.2901138519435 0 48.00287389420005 0 0 0 1.4749073637206092 0 0.4247425010840047 0 AEAPE 5.1556 - 118 NaN NaN 135528.1 NaN 5886 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8216 43.058 NaN 267200 35 0 52830 0.263 + 11514 IYRSDFWNF 9 44 416.5328933802519 1246.5768507409557 3 416.5326843261719 MULTI HCD FTMS 0 0 0 8213 53245.93359375 0.29311071416959644 8 -0.2309722900390625 3 Unmodified _IYRSDFWNF_ ENSG00000121871|ENST00000475390|SLITRK3 2.498486711656943 0.33207666356665205 1 E{M(Oxidation (M))|F} 2 8 25.969 0 0 2.0832 0 0 952.4531003082209 0 952.4531003082209 0 25.969100130080562 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.0832 - 6 NaN NaN 131085.7 NaN 5887 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8217 43.061 NaN 72552 35 0 12284 0.261 + 2741 DVYSDLNTQR 10 25 605.7887971574906 1209.5630413817812 2 605.7888793945312 MULTI HCD FTMS 0 0 0 8213 43969.36328125 0.3958846646774232 2 -0.056110382080078125 4 Unmodified _DVYSDLNTQR_ ENSG00000011600|ENST00000262629|TYROBP;ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-2|TYROBP;nc|ENSG00000011600|O43914-3|TYROBP 40.714236015149055 0.13920871250597291 1 [DV]YSD{I|L}N 7 3 84.469 0 0 6.9834 0 0 0 400.19477258853755 400.19477258853755 77.4788822586217 0 0 0 0 2.274227503252014 2 0.8494850021680094 0 + [DV]YSD{I|L}N 6.9834 + + 65 + NaN NaN 99575.1 NaN 5888 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8218 43.065 NaN 124820 35 0 8445 0.261 + 3962 EQLCRRTCL 9 48 561.2821860967749 1120.5498192603498 2 560.7653198242188 MULTI HCD FTMS 0 0 0 8213 2559.993408203125 0.033330355372809546 -14 0.4093666076660156 5 Unmodified _EQLCRRTCL_ ENSG00000112659|ENST00000252050|CUL9;ENST00000515344.1_1_6:43171139-43171751:+|nuORF;ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9 3.5964929083625545 0.32375295897743744 1 R{I|L}QQN 5 8 23.532 0 0 2.1 0 0 463.21995742011876 0 463.21995742011876 0 11.224862742317468 0 0 0 0 0 0 0 R{I|L}QQN 2.1 - 166 NaN NaN 111837.5 NaN 5889 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8219 43.068 NaN 43377 35 0 5067.2 0.261 + 25555 SFPLFEWR 8 38 541.2768411675763 1080.5391294019526 2 541.7774047851562 MULTI HCD FTMS 0 0 0 8213 7378.23486328125 0.022028220858595203 32 -0.879974365234375 6 Unmodified _SFPLFEWR_ REV__ENST00000334690.10_1_4:184605139-184605184:+|nuORF 4.75600775471527 0.5349361699807423 1 W 1 -1 3.4949 0 0 0.32344 0 0 399.1781807708963 492.24509607486567 891.423276845762 0 0 0 0 0 0 0 0 0 W 0.32344 + + 1 + NaN NaN 86478.3 NaN 5890 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8220 43.071 NaN 35705 35 0 4102.8 0.261 -1 QPGLNMCK 8 22 482.2226234131776 962.4306938931552 2 482.7232971191406 MULTI HCD FTMS 0 0 0 8213 14848.3515625 0.9116513103024845 2 -0.056110382080078125 7 Carbamidomethyl (C),Oxidation (M) _QPGLNM(Oxidation (M))C(Carbamidomethyl (C))K_ ENSG00000181333|ENST00000315765|HEPHL1 2.302733041254933 0.5385759549224092 1 E 1 -1 5.4846 0 0 0.56986 0 0 512.2230960921771 318.1431063287719 830.3662024209491 0 0 0 0 0 0 0 0 0 E 0.56986 - 3 + NaN NaN 85125.8 NaN 5891 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8221 43.075 NaN 79707 35 0 13874 0.261 + 35080 YTVMDAVIS 9 37 499.7447793865648 NaN 0 499.7439270019531 PEAK HCD FTMS 0 0 0 8213 3112.047607421875 0.3174247988713207 1 -0.029712677001953125 8 Unmodified _YTVMDAVIS_ REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1 10.823927491677226 0.2427956001690155 1 V 1 -1 11.99 0 0 1.202 0 0 634.2956978338734 261.08811365299067 895.383811486864 0 0 0 0 0 0.5 0 0 0 V 1.202 + + 13 + NaN NaN 105166.8 NaN 5892 2327 8213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8223 43.08 NaN 344210 35 0 78500 0.327 + 8594 HAVSDPSIL 9 42 469.75066262444767 937.4867723156954 2 469.7505187988281 MULTI HCD FTMS 0 0 0 8222 174523.390625 1 0 0 1 Unmodified _HAVSDPSIL_ ENSG00000134001|ENST00000256383|EIF2S1 21.74664581756881 0.17247014374749275 1 {I|L}{I|L} 2 7 25.969 0 0 2.7701 0 0 693.3094623854479 0 693.3094623854479 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.7701 + + 7 NaN NaN 135180.6 NaN 5893 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8224 43.084 NaN 126840 35 0 13245 0.261 + 30531 VMSQALKATF 10 44 556.2943919492278 1110.5742309652555 2 556.2942504882812 MULTI HCD FTMS 0 0 0 8222 92421.1796875 0.25723145464677444 6 -0.16823196411132812 2 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 67.08073823543168 0.021044403604576784 1 {I|L}KAT{M(Oxidation (M))|F} 5 5 62.493 0 0 5.6271 0 0 532.2325084084181 0 532.2325084084181 0 55.50312209084183 0 0 0 2.25 0 0.805462187404089 0 + {I|L}KAT{M(Oxidation (M))|F} 5.6271 + + 162 + NaN NaN 96552 NaN 5894 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8225 43.088 NaN 178410 35 0 39293 0.261 + 7258 FTASFTSVSLC 11 37 581.7750693399289 NaN 0 581.7615966796875 PEAK HCD FTMS 0 0 0 8222 8334.1220703125 0.6531129724429756 -7 0.208038330078125 3 Unmodified _FTASFTSVSLC_ ENSG00000159905|ENST00000587682|ZNF221 12.240655878213236 0.3073969278659688 1 CSVS 4 8 28.175 0 0 2.4257 0 0 131.0965731507577 651.2909639947874 782.3875371455451 0 0 0 0 0 0 0 0.7742275032520141 0 CSVS 2.4257 - 58 + NaN NaN 107054.7 NaN 5895 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8226 43.091 NaN 47899 35 0 7727.9 0.261 + 13218 KYLYVDKNF 9 25 595.3164705772219 1188.6183882212438 2 595.315673828125 MULTI HCD FTMS 0 0 0 8222 32124.751953125 0.16226596741806806 7 -0.20125961303710938 4 Unmodified _KYLYVDKNF_ ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant 17.44264345198275 0.2096557692338702 1 DK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4 5 26.198 0 0 2.2041 0 0 666.3748425769944 0 666.3748425769944 0 0 0 0 0 1 0 0 0 + DK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 2.2041 + + 9 NaN NaN 94407.5 NaN 5896 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8227 43.094 NaN 63728 35 0 10945 0.261 -1 LLKMCFFA 8 30 515.2662964317756 NaN 0 515.2767333984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _LLKMC(Carbamidomethyl (C))FFA_ ENST00000510629.1_1_5:57752724-57753235:-|nuORF 2.577480529830294 0.38822285293237185 1 SV 2 -1 10.969 0 0 1.0665 0 0 149.0864125883573 690.3111055963499 839.3975181847072 0 0 0 0 0 0 0 0 0 SV 1.0665 - 7 + NaN NaN 91259.1 NaN 5897 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8228 43.098 NaN 22696 35 0 4206.9 0.261 + 6511 FPISDDRNSSV 11 17 618.7968135403453 1235.5790741474905 2 618.796142578125 MULTI HCD FTMS 0 0 0 8222 23045.400390625 0.8135358551295029 7 -0.20125961303710938 6 Unmodified _FPISDDRNSSV_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B 3.5870582119611467 0.4031890477297048 1 P{I|L} 2 9 9.464 0 0 0.76595 0 0 147.07621877815296 875.3460177057249 1022.4222364838779 0 0 0 0 0 0 0 0 0 + P{I|L} 0.76595 + + 3 + NaN NaN 81237.8 NaN 5898 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8229 43.101 NaN 62868 35 0 16942 0.263 + 18638 MYDDIAHS 8 28 476.19819113086925 NaN 0 476.1986083984375 PEAK HCD FTMS 0 0 0 8222 12751.556640625 0.5337603058020871 -5 0.148681640625 7 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 1 D 1 7 3.9794 0 0 0.41872 0 0 426.2216253263885 406.1106356256469 832.3322609520354 0 0 0 0 0 0 0 0 0 + D 0.41872 + + 2 + NaN NaN 97246.1 NaN 5899 2328 8222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8231 43.106 NaN 1014900 35 0 248190 0.327 + 8989 HPEEGDLDL 9 70 512.7326878923853 1023.4508228515707 2 512.7326049804688 MULTI HCD FTMS 0 0 0 8230 691404.875 0.4430056704037665 8 -0.2375946044921875 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 115.6920309560759 0.002013163348980568 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 86.01 0 0 8.4039 8.4039 93.31 0 0 0 4.137342758552691 49.539106406846045 4.137342758552691 10.779550148593486 0 2.2302046884880937 0 1.5114393726401687 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};[EP]HEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L} 8.4039;7.3507;5.3725 +;-;- + 416 NaN NaN 241282.1 NaN 5900 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8232 43.111 NaN 240130 35 0 28253 0.261 + 33185 YEVNGNQDI 9 59 526.2375741714324 1050.4605954096646 2 526.7393188476562 MULTI HCD FTMS 0 0 0 8230 83311.8046875 0.6342532064134335 -12 0.3532142639160156 2 Unmodified _YEVNGNQDI_ REV__ENSG00000086717|ENST00000470157|PPEF1;REV__nc|ENSG00000086717|O14829-2|PPEF1;REV__nc|ENSG00000086717|O14829-3|PPEF1;REV__nc|ENSG00000086717|O14829-5|PPEF1 9.38312468134398 0.279288223203164 1 EVC(Carbamidomethyl (C))[RN]VQ{M(Oxidation (M))|F} 8 -1 + 47.6 0 0 4.5313 4.5313 86.193 0 0 0 30.9176003468815 16.40978057358332 16.40978057358332 9.262137858390808 0 0 0 0 0.8494850021680094 EVC(Carbamidomethyl (C))[RN]VQ{M(Oxidation (M))|F};EV[CG][RN]VQ{M(Oxidation (M))|F};EVC(Carbamidomethyl (C))[RN]V[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[HG]|PP} 4.5313;3.6496;2.8409;0.62482 -;-;-;- 139 + NaN NaN 134082.6 NaN 5901 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8233 43.114 NaN 82804 35 0 11235 0.261 + 5057 FDSDVGVYR 9 38 529.2511674035553 1056.4877818739105 2 529.25048828125 MULTI HCD FTMS 0 0 0 8230 42445.0078125 0.05608057104861697 19 -0.5271873474121094 3 Unmodified _FDSDVGVYR_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF 47.748688679222035 0.03472022231463587 1 {[{M(Oxidation (M))|F}D]|MM}SDVR[YR] 8 2 {[{M(Oxidation (M))|F}D]|MM} + + 42.466 5.2288 1.995 4.0195 4.0195 60.131 0 0 0 0 39.366903183326514 0 0 0 1.3252574989159953 0 0.3807196863200844 0 {[{M(Oxidation (M))|F}D]|MM}SDVR[YR] 4.0195 - 47 + NaN NaN 97195.7 NaN 5902 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8234 43.117 NaN 263140 35 0 45664 0.261 + 24531 RYLEQLHQL 9 40 600.3302654614056 1198.645977989611 2 600.3295288085938 MULTI HCD FTMS 0 0 0 8230 90643.3515625 0.09714186290820291 -4 0.11896133422851562 4 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 34.93206674587334 0.08860942999206235 1 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L} 9 4 + 58.606 0 0 4.8893 4.8893 83.683 0 0 0 1.3502935127679194 47.36880000633434 1.3502935127679194 5.496812376923046 0 1.274227503252014 0 0 0.6989700043360187 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};[VP][HV]EQ{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR][AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}H[AG]{I|L};[VP][HV]EQ{I|L}H[AG]{I|L};[HQ][VP]{NN|[MP]|[D{I|L}]|[EV]}{I|L}HQ{I|L};[VP][HQ]{NN|[MP]|[D{I|L}]|[EV]}{I|L}HQ{I|L};[H{I|L}][NP]{NN|[MP]|[D{I|L}]|[EV]}{I|L}HQ{I|L};[VP][HV]E[AG]{I|L}HQ{I|L} 4.8893;4.4308;4.1211;4.1211;3.6662;3.6199;3.5156;3.4348;3.3746 -;-;-;-;-;-;-;-;- 113 NaN NaN 127190.2 NaN 5903 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8235 43.121 NaN 70292 35 0 9920.8 0.261 -1 FADRLYDSM 9 27 567.2503140180667 1132.4860751029332 2 567.25048828125 MULTI HCD FTMS 0 0 0 8230 38358.69921875 1 0 0 5 Oxidation (M) _FADRLYDSM(Oxidation (M))_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 34.93206674587334 0.08860942999206235 1 YDS{M(Oxidation (M))|F} 4 -1 53.972 0 0 4.7658 0 0 602.316776862502 0 602.316776862502 0 49.368128451160516 0 0 0 2 0 0.805462187404089 0 YDS{M(Oxidation (M))|F} 4.7658 + + 22 + NaN NaN 109666.5 NaN 5904 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8236 43.124 NaN 46033 35 0 13869 0.261 -1 RADQFEYVM 9 16 587.763538542368 1173.512524151536 2 587.763916015625 MULTI HCD FTMS 0 0 0 8230 28774.9375 0.050022474307742974 23 -0.6326713562011719 6 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 13.042465956692817 0.2476723265019929 1 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3371129589708 0 746.3371129589708 0 29.20818753952375 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 22 NaN NaN 90680.8 NaN 5905 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8237 43.127 NaN 134760 35 0 19386 0.262 + 10817 ITAGLDPVGR 10 38 499.7849103094705 997.555267685741 2 500.27716064453125 MULTI HCD FTMS 0 0 0 8230 7770.0849609375 0.6635315727538126 -3 0.09252548217773438 7 Unmodified _ITAGLDPVGR_ ENSG00000172354|ENST00000303210|GNB2;ENST00000480159.1_1_7:100273867-100274642:+|nuORF;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant 6.630372943996041 0.44020808660041416 1 VSA 3 9 19.297 0 0 1.9344 0 0 148.12263944854038 589.2730196588499 737.3956591073902 0 0 0 0 0 0 0 1 0 VSA 1.9344 - 65 + NaN NaN 102770.7 NaN 5906 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8238 43.131 NaN 110620 35 0 13180 0.261 -1 EVKQMLHII 9 36 563.8194253358613 NaN 0 563.8317260742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _EVKQM(Oxidation (M))LHII_ ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107423.9 NaN 5907 2329 8230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8240 43.136 NaN 338490 35 0 46769 0.327 + 22414 QPVHGDLDL 9 62 497.25372146763226 992.4928900020645 2 497.2535095214844 MULTI HCD FTMS 0 0 0 8239 171187.6875 0.6598726837401008 2 -0.05941009521484375 1 Unmodified _QPVHGDLDL_ ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 26.88365393820708 0.12808753336095696 1 {NN|[MP]|[D{I|L}]|[EV]}[KS]GD[{M(Oxidation (M))|F}V]{I|L} 9 5 + 30.313 0 0 3.0542 3.0542 81.915 0 0 0 14.08461770751963 0.21652514092060926 0.21652514092060926 6.237125054200234 0 0 1.5228787452803376 0.5 0.7742275032520141 {NN|[MP]|[D{I|L}]|[EV]}[KS]GD[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}[KS]GD{I|L}[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}[DG][KS]{I|L}[{M(Oxidation (M))|F}V] 3.0542;2.4258;1.0634 -;-;- 228 NaN NaN 136534 NaN 5908 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8241 43.14 NaN 210850 35 0 32982 0.261 + 3165 EAVKVEEEL 9 57 523.2741307670476 1044.5337086008951 2 523.2740478515625 MULTI HCD FTMS 0 0 0 8239 119616.7578125 0.337765524452847 5 -0.14516830444335938 2 Unmodified _EAVKVEEEL_ ENSG00000137975|ENST00000370565|CLCA2 72.96794272382148 0.008127836904478181 1 VKV{M(Oxidation (M))|F}EE{I|L} 7 3 41.124 0 0 3.9371 0 0 182.06884963203282 0 182.06884963203282 0 22.039106406846045 0 0 0 0.9247425010840047 0 1 0 VKV{M(Oxidation (M))|F}EE{I|L} 3.9371 - 349 NaN NaN 114320.6 NaN 5909 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8242 43.144 NaN 409790 35 0 99317 0.261 + 7117 FRTSYSSGPF 10 63 574.7722174630183 1147.5298819928364 2 574.77197265625 MULTI HCD FTMS 0 0 0 8239 186852.21875 0.8073101803289069 -3 0.08580398559570312 3 Unmodified _FRTSYSSGPF_ REV__ENSG00000115970|ENST00000405975|THADA;REV__ENST00000408045.7_1_2:43571220-43805671:-|nuORF;REV__nc|ENSG00000115970|Q6YHU6-2|THADA;REV__nc|ENSG00000115970|Q6YHU6-3|THADA;REV__nc|ENSG00000115970|Q6YHU6-5|THADA;REV__nc|ENSG00000115970|Q6YHU6-6|THADA 12.240655878213236 0.39661705172222156 1 {I|L}ST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 8 -1 48.709 0 0 4.2447 0 0 293.10264918209265 0 293.10264918209265 0 32.48900705337124 0 0 0 1.3807196863200843 0 1.4247425010840047 0 {I|L}ST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 4.2447 - 349 + NaN NaN 169309.5 NaN 5910 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8243 43.147 NaN 62822 35 0 5392.2 0.261 + 7981 GESSFTYRAY 10 37 590.7671488337442 1179.5197447342882 2 590.7664184570312 MULTI HCD FTMS 0 0 0 8239 42727.46875 0.6905648293915532 2 -0.05941009521484375 4 Unmodified _GESSFTYRAY_ ENSG00000139218|ENST00000369367|SCAF11 35.61225514009592 0.18348312004207498 1 {[DA]|[EG]}SS{M(Oxidation (M))|F}TYRAY 10 0 + 67.612 0 0 5.7322 5.7322 92.805 0 0 0 67.61230030668848 5.764837301042718 5.764837301042718 67.61230030668848 0 1.4247425010840047 0 0 0 + + {[DA]|[EG]}SS{M(Oxidation (M))|F}TYRAY 5.7322 + + 59 + NaN NaN 87717.8 NaN 5911 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8244 43.15 NaN 212720 35 0 21603 0.261 + 21724 QADQVDVKL 9 55 508.27452488241306 1014.5344968316261 2 508.27410888671875 MULTI HCD FTMS 0 0 0 8239 93055.125 0.5811373963156912 -3 0.08580398559570312 5 Unmodified _QADQVDVKL_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 51.41523569358685 0.02959097413485123 1 E[KC]VK{I|L} 6 6 43.918 0 0 4.3289 0 0 296.11226088691564 0 296.11226088691564 0 30.7306842758112 0 0 0 0.9247425010840047 0 1.3494850021680094 0.8807196863200843 E[KC]VK{I|L} 4.3289 - 171 NaN NaN 117803 NaN 5912 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8245 43.154 NaN 62814 35 0 6411.5 0.261 + 11907 KFIDTTSKF 9 35 543.7953581245174 NaN 0 543.7945556640625 PEAK HCD FTMS 0 0 0 8239 50021.28515625 0.629649878755468 -8 0.23111343383789062 6 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 23.80106514851385 0.1618846617838238 1 {M(Oxidation (M))|F}{I|L}DG 4 6 30.349 0 0 2.7957 0 0 128.09603620475542 522.2519014947874 650.3479376995429 0 0 0 0 0 0.8807196863200843 0 0.5 0 {M(Oxidation (M))|F}{I|L}DG 2.7957 - 20 + NaN NaN 95007.1 NaN 5913 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8246 43.157 NaN 142660 35 0 20082 0.261 -1 RYLSPKYIKMF 11 51 487.93555575279356 1460.7848378585807 3 487.9351501464844 MULTI HCD FTMS 0 0 0 8239 27865 0.08745926461753491 -26 0.752685546875 7 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 3.133959531975271 0.40517618462012517 1 PD 2 -1 7.0783 0 0 0.48456 0 0 633.3721924501807 612.3116549127561 1245.6838473629368 0 0 0 0 0 0 0 0 0 PD 0.48456 - 12 + NaN NaN 113861.8 NaN 5914 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8247 43.16 NaN 50861 35 0 6883.9 0.261 -1 DMHTEVTTL 9 32 531.7421757598927 1061.4697985865853 2 531.7420654296875 MULTI HCD FTMS 0 0 0 8239 11874.2099609375 0.019472559787554588 67 -1.8784065246582031 8 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 3.944395688203298 0.32111559684428237 1 T[{I|L}T] 3 -1 15.458 0 0 1.4562 0 0 728.2789516897869 0 728.2789516897869 0 15.45757490560675 0 0 0 0.5 0 0 0 T[{I|L}T] 1.4562 + + 2 NaN NaN 103426.7 NaN 5915 2330 8239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8249 43.165 NaN 439370 35 0 131050 0.327 + 540 APEEHPTLL 9 50 503.7640484757953 1005.5135440183906 2 503.763671875 MULTI HCD FTMS 0 0 0 8248 103731.9296875 0.10654475107003046 8 -0.24086761474609375 1 Unmodified _APEEHPTLL_ ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2 46.020951573049366 0.037705236580089195 1 APE{[YC]|[HE]}[TP]{I|L}{I|L} 9 0 + 26.634 0 0 2.6488 2.6488 87.435 0 0 0 5.179921580021091 2.904849854573687 2.904849854573687 26.633571775141935 0 1.3494850021680094 0 0.3807196863200844 0 + + APE{[YC]|[HE]}[TP]{I|L}{I|L} 2.6488 + + 15 + NaN NaN 151176.5 NaN 5916 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8250 43.17 NaN 317750 35 0 55336 0.261 + 26244 SQEAPEAPL 9 51 471.23233530894873 940.4501176846975 2 471.2319641113281 MULTI HCD FTMS 0 0 0 8248 98540.78125 0.6784662036344241 3 -0.08241653442382812 2 Unmodified _SQEAPEAPL_ ENSG00000137337|ENST00000376406|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;nc|ENSG00000137337|Q14676-3|MDC1 20.453626601364224 0.18364154288633264 1 Q[VS]{I|L} 4 7 10.696 0 0 1.1373 0 0 495.19429213691564 0 495.19429213691564 0 1.7166347705757445 0 0 0 0 0 0.28872548999643577 0.28872548999643577 Q[VS]{I|L} 1.1373 - 18 NaN NaN 128681.4 NaN 5917 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8251 43.173 NaN 114850 35 0 19767 0.261 + 31132 VTSTKLNL 8 39 438.2633310830747 874.5121092329495 2 438.26312255859375 MULTI HCD FTMS 0 0 0 8248 72608.90625 0.8184254164737049 14 -0.39212799072265625 3 Unmodified _VTSTKLNL_ REV__ENSG00000257923|ENST00000292535|CUX1;REV__nc|ENSG00000257923|P39880-2|CUX1;REV__nc|ENSG00000257923|P39880-3|CUX1;REV__nc|ENSG00000257923|P39880-4|CUX1;REV__nc|ENSG00000257923|P39880-5|CUX1;REV__nc|ENSG00000257923|P39880-6|CUX1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 110864.2 NaN 5918 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8252 43.177 NaN 61727 35 0 15155 0.261 -1 0 35 579.2930215653635 578.2857450987634 1 579.2933959960938 MULTI HCD FTMS 0 0 0 8248 41977.234375 0.919380060637389 3 -0.08241653442382812 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95189 NaN 5919 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8253 43.18 NaN 279190 35 0 45894 0.264 + 24161 RYFDPANGKF 10 54 405.53648450026185 1213.5876241009855 3 405.53662109375 MULTI HCD FTMS 0 0 0 8248 59355.03515625 0.1100842790242093 -6 0.17837905883789062 5 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 35.61225514009592 0.18348312004207498 1 PAN[KG]{M(Oxidation (M))|F} 6 4 47.708 0 0 3.9312 0 0 581.259486043473 0 581.259486043473 0 43.72872192056825 0 0 0 2.2302046884880937 0 0 0 + PAN[KG]{M(Oxidation (M))|F} 3.9312 + + 114 NaN NaN 127330.4 NaN 5920 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8254 43.183 NaN 123740 35 0 22887 0.261 + 33936 YLRSDMKQL 9 42 577.3053239062021 1152.5960948792042 2 577.3057861328125 MULTI HCD FTMS 0 0 0 8248 46112.7734375 0.7905753804681731 -6 0.17837905883789062 6 Unmodified _YLRSDMKQL_ REV__BRINP1|p.E573Rfs*90|1|0.44|ENSG00000078725|chr9:119167653-119167653|C/-|frameshift_variant;REV__ENSG00000078725|ENST00000265922|BRINP1;REV__nc|ENSG00000078725|O60477-3|BRINP1 16.149105407346934 0.22083165093524068 1 VQ{I|L} 3 -1 29.085 0 0 2.5234 0 0 794.3719959943375 0 794.3719959943375 0 23.600592417808013 0 0 0 0.28872548999643577 0 0 0 VQ{I|L} 2.5234 - 40 NaN NaN 98313.6 NaN 5921 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8255 43.187 NaN 57030 35 0 5019.5 0.262 -1 LPAPPTQNM 9 40 492.74424673437704 NaN 0 492.7437438964844 PEAK HCD FTMS 0 0 0 8248 15662.8994140625 0.3137707337842629 8 -0.24086761474609375 7 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ ENSG00000141380|ENST00000415083|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant 18.1463463914782 0.1998403495282098 1 N 1 -1 9.732 0 0 0.98955 0 0 165.04914913106035 701.3634737604124 866.4126228914727 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.98955 + + 12 + NaN NaN 98292.1 NaN 5922 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8256 43.19 NaN 90578 35 0 14425 0.261 + 16905 LYFYANGL 8 35 480.7426827838521 NaN 0 480.7428283691406 PEAK HCD FTMS 0 0 0 8248 15893.951171875 0.8323044721378006 1 -0.02968597412109375 8 Unmodified _LYFYANGL_ REV__ENSG00000121957|ENST00000264126|GPSM2;REV__ENSG00000160360|ENST00000440944|GPSM1;REV__nc|ENSG00000160360|Q86YR5-3|GPSM1;REV__nc|ENSG00000160360|Q86YR5-4|GPSM1;REV__nc|ENSG00000160360|Q86YR5|GPSM1 5.760428011301431 0.38822285293237185 1 ASVV{I|L} 5 -1 24.949 0 0 2.6002 0 0 202.98411527979925 284.17341028385005 487.1575255636493 0 0 0 0 0 0 0 0 0 ASVV{I|L} 2.6002 - 21 + NaN NaN 93511.8 NaN 5923 2331 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8258 43.195 NaN 231440 35 0 32547 0.327 + 5815 FPDAREQEI 9 53 552.7695162976828 1103.5244796621655 2 552.7694702148438 MULTI HCD FTMS 0 0 0 8257 117645.8515625 0.42971071919957393 -15 0.4423179626464844 1 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 49.52724829834842 0.03223213920720493 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 71.454 0 0 6.4751 6.4751 86.846 0 0 0 24.76203644159419 45.53634214230114 24.76203644159419 6.505149978319906 0 1.3182503180159344 2 0.6694451763165201 0.3494850021680094 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E;[DP]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}EQ{I|L}E;[DP]{M(Oxidation (M))|F}ARE[AG]E{I|L};[VP]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[SA]|[TG]}DPE 6.4751;5.8856;5.6406;5.0511;4.0086;3.4191;3.1741;2.8347;2.5846;2.5367 -;+;-;-;-;-;-;-;-;- + 242 NaN NaN 118390.5 NaN 5924 2332 8257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8259 43.2 NaN 250390 35 0 38988 0.261 + 5677 FPAEAGRDTL 10 46 538.772146697701 1075.529740462202 2 538.7718505859375 MULTI HCD FTMS 0 0 0 8257 62218.8515625 0.42637714399520726 12 -0.3394432067871094 2 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 43.981846655682396 0.11085276043338313 1 AEAPE 5 7 56.058 0 0 5.2121 0 0 560.2902088849625 0 560.2902088849625 0 56.05774396488272 0 0 0 1.5356668758921828 0 0.4247425010840047 0 AEAPE 5.2121 - 55 NaN NaN 123101.4 NaN 5925 2332 8257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8260 43.203 NaN 123000 35 0 13339 0.261 -1 KYIQEAEML 9 42 570.7839582995493 1139.5533636658986 2 570.7841186523438 MULTI HCD FTMS 0 0 0 8257 52042.78125 0.6622960833568466 2 -0.052730560302734375 3 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 33.4449034751529 0.0954363425218424 1 QEAE{M(Oxidation (M))|F}{I|L} 6 -1 51.86 0 0 4.5509 0 0 404.24223525215 0 404.24223525215 0 32.39577516576787 0 0 0 1.8494850021680094 0 0 0 QEAE{M(Oxidation (M))|F}{I|L} 4.5509 + + 65 NaN NaN 108339.1 NaN 5926 2332 8257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8261 43.206 NaN 72210 35 0 6280.8 0.261 -1 YPESESIMM 9 28 559.7224920098566 1117.4304310865132 2 559.7225341796875 MULTI HCD FTMS 0 0 0 8257 35664.5078125 0.25167817351739147 -19 0.5545806884765625 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.11819662193267319 1 T{M(Oxidation (M))|F}[RH]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 38.901 0 0 3.4813 0 0 64.0001591587223 0 64.0001591587223 0 31.91122510072759 0 0 0 0.5 0 0.8494850021680094 0 T{M(Oxidation (M))|F}[RH]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4813 - 32 + NaN NaN 109371 NaN 5927 2332 8257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8262 43.21 NaN 88611 35 0 14108 0.262 -1 TIGVDFEMERF 11 30 453.87994203616904 1358.617996708707 3 453.8800354003906 MULTI HCD FTMS 0 0 0 8257 35900.1015625 0.11039496647271686 54 -1.5091781616210938 5 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.11662792887243 0.40086653484894175 1 R{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.1003 0 0 1037.4378647280414 0 1037.4378647280414 0 0.21652514092060926 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1003 + + 18 + NaN NaN 102385.9 NaN 5928 2332 8257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8263 43.213 NaN 150530 35 0 20715 0.261 + 28747 TTASVVIIR 9 52 480.2978318193665 958.581110705533 2 480.2974853515625 MULTI HCD FTMS 0 0 0 8257 38566.0234375 0.3683758385735904 -4 0.11550140380859375 6 Unmodified _TTASVVIIR_ ENSG00000170836|ENST00000305921|PPM1D;nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant 82.5293158979368 0.005033931517079822 1 {[DS]|[MA]|[CV]|TT}ASVV{I|L}{I|L}R 9 0 + 68.338 0 0 7.1291 7.1291 95.303 0 0 0 57.43501263708417 12.98332479720628 12.98332479720628 68.3379001364149 0 1.9916440611282624 0 0.3807196863200844 0 + + {[DS]|[MA]|[CV]|TT}ASVV{I|L}{I|L}R 7.1291 + + 141 + NaN NaN 119419.6 NaN 5929 2332 8257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8265 43.218 NaN 525250 35 0 153350 0.327 -1 LERSFFIRM 9 53 607.8212569638197 NaN 0 607.8012084960938 PEAK HCD FTMS 0 0 0 8264 9308.0751953125 0.8021004724678737 -1 0.0230255126953125 1 Oxidation (M) _LERSFFIRM(Oxidation (M))_ ENSG00000151322|ENST00000356141|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;nc|ENSG00000151322|Q8IXF0-4|NPAS3 14.838274106304384 0.2220448417561729 1 KGN[PA]D 6 -1 25.947 0 0 2.138 0 0 165.12010074228925 463.2107332818969 628.3308340241862 0 0 0 0 0 0 0 0.8494850021680094 0.3807196863200844 KGN[PA]D 2.138 - 230 + NaN NaN 166515.8 NaN 5930 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8266 43.223 NaN 169090 35 0 30917 0.263 -1 SSGPVDPMM 9 38 468.6936316455463 935.3727103578926 2 468.6933898925781 MULTI HCD FTMS 0 0 0 8264 78199.40625 0.9239766448951048 2 -0.06273269653320312 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 D 1 -1 17.985 0 0 1.9227 0 0 393.13860909967474 424.18344065850727 817.322049758182 0 0 0 0 0 0.9247425010840047 0 0.3252574989159953 0 D 1.9227 + + 13 + NaN NaN 107311.7 NaN 5931 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8267 43.226 NaN 262440 35 0 38065 0.261 + 25323 SCQLHRLDEF 10 49 416.5328933802519 1246.5768507409557 3 416.53253173828125 MULTI HCD FTMS 0 0 0 8264 52644.51953125 0.28980002181295594 14 -0.3854331970214844 3 Unmodified _SCQLHRLDEF_ REV__ENSG00000214414|ENST00000398290|TRIM77 3.5870582119611467 0.4563168352879256 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.6433 0 0 1081.4978540141963 0 1081.4978540141963 0 15 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6433 + + 16 + NaN NaN 128302 NaN 5932 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8268 43.23 NaN 57555 35 0 7410.3 0.261 + 13047 KYLAHLEQL 9 36 557.8162374816234 1113.6179220300467 2 557.8158569335938 MULTI HCD FTMS 0 0 0 8264 31598.962890625 0.11377429963274178 12 -0.33941650390625 4 Unmodified _KYLAHLEQL_ ENSG00000162645|ENST00000370466|GBP2 8.155526934196011 0.2891920862272901 1 {I|L}EQ{I|L} 4 5 31.938 0 0 2.868 0 0 612.3369007794937 0 612.3369007794937 0 31.938200260161125 0 0 0 0 0 0 0 + {I|L}EQ{I|L} 2.868 + + 16 NaN NaN 105042.3 NaN 5933 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8269 43.233 NaN 156500 35 0 11393 0.261 + -1 ELVCRSMAR 9 64 561.2821860967749 1120.5498192603498 2 560.765869140625 MULTI HCD FTMS 0 0 0 8264 22644.658203125 0.29482673775153584 -8 0.23109054565429688 5 Carbamidomethyl (C) _ELVC(Carbamidomethyl (C))RSMAR_ REV__ENSG00000187024|ENST00000543175|PTRH1;REV__ENST00000335223.5_1_9:130455530-130477918:-|nuORF 6.2057823575117 0.30397260197431997 1 VHYPS{[{M(Oxidation (M))|F}H]|[RQ]} 7 -1 14.702 0 0 1.3121 0 0 235.13321233171058 0 235.13321233171058 0 4.525166531265725 0 0 0 0 0 0.3054621874040891 0 VHYPS{[{M(Oxidation (M))|F}H]|[RQ]} 1.3121 - 268 + NaN NaN 108720.5 NaN 5934 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8270 43.236 NaN 66435 35 0 14157 0.261 -1 ERFQMDLFT 9 32 601.7792183290833 1201.5438837249665 2 602.76171875 MULTI HCD FTMS 0 0 0 8264 8642.6162109375 0.44502868938974816 -6 0.16823959350585938 6 Oxidation (M) _ERFQM(Oxidation (M))DLFT_ ENSG00000156574|ENST00000287139|NODAL 1.844237919475145 0.33703635659052655 1 ED 2 -1 11.198 0 0 0.93196 0 0 129.13194214573952 825.3071383111936 954.4390804569332 0 0 0 0 0 0 0 0.5 0 ED 0.93196 - 8 + NaN NaN 83433.6 NaN 5935 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8271 43.24 NaN 47969 35 0 7276 0.261 + -1 EPYEFMYSM 9 17 614.7303388813375 1227.446124829475 2 614.7294311523438 MULTI HCD FTMS 0 0 0 8264 19489.357421875 0.6756297201078456 -4 0.11212921142578125 7 2 Oxidation (M) _EPYEFM(Oxidation (M))YSM(Oxidation (M))_ REV__ENSG00000197121|ENST00000354764|PGAP1;REV__ENST00000470179.5_1_2:197712669-197791463:-|nuORF;REV__nc|ENSG00000197121|Q75T13-3|PGAP1;REV__nc|ENSG00000197121|Q75T13-4|PGAP1 0.5247636613948944 0.34703895399870666 1 M 1 -1 3.9794 0 0 0.3242 0 0 649.07034465545 444.31208215885005 1093.3824268143 0 0 0 0 0 0 0 0 0 M 0.3242 + + 2 + NaN NaN 90885.2 NaN 5936 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8272 43.243 NaN 79045 35 0 11605 0.261 -1 YALMTVILC 9 43 550.2800840154773 1098.5456150977545 2 550.2799072265625 MULTI HCD FTMS 0 0 0 8264 16455.412109375 0.6707634287297471 -3 0.08243560791015625 8 Carbamidomethyl (C),Oxidation (M) _YALM(Oxidation (M))TVILC(Carbamidomethyl (C))_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|71 18.13498045792455 0.20367413111508956 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 37.447 0 0 3.4088 0 0 0 748.337948431992 748.337948431992 31.962724883926654 0 0 0 0 1 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3.4088 + + 10 NaN NaN 97630.5 NaN 5937 2333 8264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8274 43.248 NaN 565630 35 0 120470 0.327 + 8990 HPEEGDLDL 9 55 512.7326878923853 1023.4508228515707 2 512.7325439453125 MULTI HCD FTMS 0 0 0 8273 322382.53125 0.20656101012141323 13 -0.3557281494140625 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 71.92227651296345 0.008466197542043549 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 69.874 0 0 6.8273 6.8273 92.953 0 0 0 4.762036441594191 39.53935460348782 4.762036441594191 24.20818753952375 0 2.055462187404089 0 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}T]{[RE]|[WV]}D{I|L} 6.8273;4.4619;2.4836 +;-;- + 191 NaN NaN 174521.3 NaN 5938 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8275 43.252 NaN 1004300 35 0 159390 0.261 + 21770 QAHLEVQQL 9 80 533.2880081197563 1064.5614633063126 2 533.287841796875 MULTI HCD FTMS 0 0 0 8273 347312.3125 0.19498001111705957 -3 0.08241653442382812 2 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 128.93241758739586 0.0006697181619526092 1 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L} 9 4 + 87.901 0 0 8.257 8.257 87.977 0 0 0 2.04628427264403 16.478174818886373 2.04628427264403 2.04628427264403 0 1.7302046884880937 0 1.3996498648046138 1.9489700043360187 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}QVHAQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};[Q{I|L}]EVHAQQ{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}][HA]EVQQ{I|L} 8.257;8.0648;7.4286;7.3921;7.3921;7.3921;7.2364;7.1998;7.1998;7.1598 -;-;-;-;-;-;-;-;-;- 1095 NaN NaN 232626.9 NaN 5939 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8276 43.256 NaN 261910 35 0 46246 0.261 + 7259 FTASFTSVSLC 11 55 581.7750693399289 NaN 0 581.7617797851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FTASFTSVSLC_ ENSG00000159905|ENST00000587682|ZNF221 16.149105407346934 0.28641792874078525 1 CSVSRS 6 8 34.373 0 0 2.9593 0 0 131.0976717835702 408.1798189752563 539.2774907588265 0 0 0 0 0 0 0 0.4247425010840047 0.5 CSVSRS 2.9593 - 137 + NaN NaN 119295 NaN 5940 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8277 43.259 NaN 210960 35 0 15542 0.264 -1 KMPKFKMPSF 10 69 419.5555857130238 1255.6449277392715 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8273 66232.90625 0.24848945077630788 24 -0.6522750854492188 4 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 14.837902256254086 0.37232328541747955 1 KM[KP]{M(Oxidation (M))|F} 5 -1 29.353 0 0 2.3377 0 0 0 621.2724703424436 621.2724703424436 7.3634673636077785 0 0 0 0 0.7134679910804405 0 0 0 KM[KP]{M(Oxidation (M))|F} 2.3377 + + 16 + NaN NaN 112408.7 NaN 5941 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8278 43.263 NaN 339240 35 0 45226 0.261 -1 AYLSKAMEI 9 50 521.2692893832807 1040.5240258333613 2 521.2688598632812 MULTI HCD FTMS 0 0 0 8273 90327 0.7618039071763125 8 -0.23740386962890625 5 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ ENSG00000124784|ENST00000379834|RIOK1 34.93206674587334 0.08860942999206235 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMS{I|L}E 9 -1 + 56.977 0 0 5.4758 5.4758 83.287 0 0 0 12.11181212626343 36.79946528474268 12.11181212626343 2.4865124202832334 0 1.0682503180159344 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMS{I|L}E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKM{I|L}SE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMSE{I|L};{[QN]|[E{I|L}]|[KN]}[HV]QS{I|L}SE;{[QN]|[E{I|L}]|[KN]}[HV]QSS{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PHK{[WT]|[RM]}E;{[QN]|[E{I|L}]|[KN]}[HV]QSSE{I|L};{[QN]|[E{I|L}]|[KN]}[HV][AG]S{I|L}SE;{[QN]|[E{I|L}]|[KN]}[HV][AG]SS{I|L}E;{[QN]|[E{I|L}]|[KN]}[HV][AG]SSE{I|L} 5.4758;5.2368;5.1865;3.5329;2.9978;2.7969;2.7085;2.648;2.1128;1.8235 -;-;-;-;-;-;-;-;-;- 204 NaN NaN 131484.3 NaN 5942 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8279 43.266 NaN 111320 35 0 23937 0.261 + 524 APAPKAYVL 9 33 465.27639934583766 928.5382457584753 2 465.2760009765625 MULTI HCD FTMS 0 0 0 8273 46539.25 0.7088180681840492 1 -0.03302764892578125 6 Unmodified _APAPKAYVL_ ENSG00000184207|ENST00000333503|PGP 20.453626601364224 0.18364154288633264 1 APA 3 6 29.922 0 0 3.2224 0 0 0 686.388548779497 686.388548779497 8.952424927286842 0 0 0 0 0.8494850021680094 0 0 0 + APA 3.2224 + + 33 + NaN NaN 99270.3 NaN 5943 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8280 43.269 NaN 82859 35 0 5515.1 0.261 + 17082 LYLCSAPPTF 10 43 556.2767907274526 NaN 0 556.2945556640625 PEAK HCD FTMS 0 0 0 8273 3357.59033203125 0.278824194594926 -5 0.14183425903320312 7 Unmodified _LYLCSAPPTF_ REV__ENSG00000119720|ENST00000354366|NRDE2 10.823927491677226 0.33092050725491123 1 {M(Oxidation (M))|F} 1 -1 8.9794 0 0 0.80856 0 0 798.4246924394771 162.0553377740844 960.4800302135615 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.80856 + + 23 + NaN NaN 96113.6 NaN 5944 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8281 43.273 NaN 72379 35 0 14518 0.261 -1 RADQFEYVM 9 32 587.763538542368 1173.512524151536 2 587.763427734375 MULTI HCD FTMS 0 0 0 8273 29785.26171875 0.05177882624681886 28 -0.7709693908691406 8 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 1 NYV{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.5737 0 0 632.2848988263687 0 632.2848988263687 0 36.453650195120844 0 0 0 1 0 0 0 NYV{M(Oxidation (M))|F} 3.5737 - 26 NaN NaN 105787.5 NaN 5945 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8282 43.276 NaN 59903 35 0 6619.1 0.261 + 33876 YLLSNKKIM 9 40 555.3228855273851 1108.63121812157 2 555.3223266601562 MULTI HCD FTMS 0 0 0 8273 11065.720703125 0.14258433482426158 8 -0.23740386962890625 9 Unmodified _YLLSNKKIM_ tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 5.230669730166228 0.3113646817964458 1 V 1 9 6.9897 0 0 0.63048 0 0 275.1976986897326 731.3432100885374 1006.54090877827 0 0 0 0 0 0 0 0 0 V 0.63048 - 10 + NaN NaN 109881.6 NaN 5946 2334 8273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8284 43.281 NaN 1679700 35 0 278680 0.327 + 24532 RYLEQLHQL 9 86 600.3302654614056 1198.645977989611 2 600.3302612304688 MULTI HCD FTMS 0 0 0 8283 910245.375 0.975503772828907 2 -0.06273269653320312 1 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 151.47984550603806 7.261867933578587E-06 1 [YR]{I|L}EQ{I|L}HQ{I|L} 9 0 + 95.962 0 0 8.0059 8.0059 91.433 0 0 0 5.642492736872612 64.56989664711035 5.642492736872612 9.208187539523749 0 2.4291746928241125 0 0.5774509799928715 1.4291746928241125 + + [YR]{I|L}EQ{I|L}HQ{I|L};[YR]{I|L}E[AG]{I|L}HQ{I|L};[YR]{I|L}EQ{I|L}H[AG]{I|L};[VP][HV]EQ{I|L}HQ{I|L};RY{I|L}EQ{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};[YR]{I|L}E[AG]{I|L}H[AG]{I|L};{I|L}E[YR]Q{I|L}HQ{I|L};{I|L}[YR]EQ{I|L}HQ{I|L};[VP][HV]EQ{I|L}H[AG]{I|L} 8.0059;7.2376;7.2376;6.7992;6.7982;6.7151;6.4731;6.2528;6.1107;6.0346 +;-;-;-;+;-;-;-;-;- + 2163 NaN NaN 333940.8 NaN 5947 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8285 43.285 NaN 590290 35 0 54496 0.262 + 13362 KYMTAVVKL 9 82 526.8124242795875 1051.610295625975 2 526.8121337890625 MULTI HCD FTMS 0 0 0 8283 253760.78125 0.8224163551002435 -2 0.06273269653320312 2 Unmodified _KYMTAVVKL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 87.25819977447905 0.004597812622239197 1 [YK]M[TA]VVK{I|L} 9 0 + 52.124 0 0 4.9566 4.9566 81.276 0 0 0 5.06625672816984 0.03386219975850935 0.03386219975850935 0.03386219975850935 0 1.9291746928241125 0 0.566901560044258 1.1791746928241125 + + [YK]M[TA]VVK{I|L};[YK]M[TA]VV{I|L}K;KYM[TA]VVK{I|L};[YK]M{[QN]|[E{I|L}]|[KN]}KK{I|L};[YK]M{[QN]|[E{I|L}]|[KN]}K{I|L}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}YKK{I|L};[TA]C{I|L}{I|L}YKK{I|L};[TA]C{I|L}{I|L}YK{I|L}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}YK{I|L}K 4.9566;4.9534;4.4748;2.9275;2.9243;1.9201;1.8121;1.8089;1.689 +;-;+;-;-;-;-;-;- + 450 NaN NaN 178781.9 NaN 5948 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8286 43.289 NaN 216390 35 0 41288 0.261 + 30609 VPCKVEPGL 9 48 471.2599468143941 940.5053406955882 2 471.25946044921875 MULTI HCD FTMS 0 0 0 8283 56412.1875 0.06208297443062836 24 -0.6490020751953125 3 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 12.240655878213236 0.2545997876781172 1 VW 2 8 25.217 0 0 2.6812 0 0 0 652.3132931027969 652.3132931027969 20.28273777167044 0 0 0 0 0.4247425010840047 0 0 0 VW 2.6812 - 9 + NaN NaN 113094.3 NaN 5949 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8287 43.292 NaN 72548 35 0 9072.8 0.261 -1 LGICVWFV 8 34 497.26475145992447 NaN 0 497.25341796875 PEAK HCD FTMS 0 0 0 8283 3648.80908203125 0.7300434962747834 -1 0.03302764892578125 4 Carbamidomethyl (C) _LGIC(Carbamidomethyl (C))VWFV_ ENSG00000124493|ENST00000538487|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4 2.8892196856762586 0.38822285293237185 1 N 1 -1 6.9897 0 0 0.70424 0 0 149.12564235223311 726.3239840143186 875.4496263665517 0 0 0 0 0 0 0 0 0 N 0.70424 - 4 + NaN NaN 99499.3 NaN 5950 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8288 43.296 NaN 50664 35 0 9748.4 0.261 + 14717 LHHHRSLV 8 28 499.7849103094705 997.555267685741 2 500.2768249511719 MULTI HCD FTMS 0 0 0 8283 4193.6591796875 0.3581203146530038 2 -0.06273269653320312 5 Unmodified _LHHHRSLV_ REV__ENSG00000008311|ENST00000417368|AASS 2.577480529830294 0.5381683276125971 1 S[{I|L}V] 3 -1 10.458 0 0 1.0483 0 0 680.3617690058567 0 680.3617690058567 0 3.4678748622465623 0 0 0 0 0 0 0 S[{I|L}V] 1.0483 + + 9 + NaN NaN 94959.9 NaN 5951 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8289 43.299 NaN 145740 35 0 21622 0.261 -1 SANLEEVTM 9 44 505.22905588523105 1008.4435588372621 2 505.2287292480469 MULTI HCD FTMS 0 0 0 8283 19692.037109375 0.02744782488646188 14 -0.3654632568359375 6 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 24.990960013464015 0.14443998892849796 1 DEVT{M(Oxidation (M))|F} 5 -1 41.983 0 0 4.1631 0 0 399.2113514630875 0 399.2113514630875 0 38.00312209084183 0 0 0 1.305462187404089 0 0 0 DEVT{M(Oxidation (M))|F} 4.1631 - 21 NaN NaN 98796.4 NaN 5952 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8290 43.302 NaN 23966 35 0 5941.7 0.261 -1 AMGVGWWV 8 20 482.2226234131776 962.4306938931552 2 482.7226257324219 MULTI HCD FTMS 0 0 0 8283 9508.1494140625 0.5837763764816488 9 -0.25368499755859375 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))AM(Oxidation (M))GVGWWV_ DMXL1|p.T1615I|1|0.38|ENSG00000172869|chr5:119164648-119164648|C/T|missense_variant;ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80361.1 NaN 5953 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8291 43.306 NaN 20494 35 0 4752.2 0.261 + 20685 PFLSFEEDPR 10 15 618.7968135403453 1235.5790741474905 2 618.7957763671875 MULTI HCD FTMS 0 0 0 8283 12522.84765625 0.4420745747089855 14 -0.3654632568359375 8 Unmodified _PFLSFEEDPR_ ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2 2.498486711656943 0.462078817294651 1 S{I|L}[EP] 4 7 16.198 0 0 1.311 0 0 791.342088767775 0 791.342088767775 0 16.197887582883936 0 0 0 0 0 0 0 S{I|L}[EP] 1.311 - 3 NaN NaN 89055 NaN 5954 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8292 43.309 NaN 68488 35 0 15147 0.261 + 23838 RRTKNALIR 9 25 564.3586450958494 NaN 0 564.359375 PEAK HCD FTMS 0 0 0 8283 21529.8984375 0.8742467337213073 47 -1.3223075866699219 9 Unmodified _RRTKNALIR_ REV__nc|ENSG00000186174|Q86UU0-2|BCL9L 0.5247636613948944 0.2927039108006614 1 V 1 -1 6.9897 0 0 0.62037 0 0 132.23417902878595 892.3770387304704 1024.6112177592563 0 0 0 0 0 0 0 0 0 V 0.62037 - 1 + NaN NaN 96518.6 NaN 5955 2335 8283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8294 43.314 NaN 839280 35 0 249790 0.327 + 8152 GPHSPDPLL 9 67 466.74535830453345 931.4761636758669 2 466.7452392578125 MULTI HCD FTMS 0 0 0 8293 400575.375 0.3063248772732504 -4 0.11876678466796875 1 Unmodified _GPHSPDPLL_ ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 57.47134341890925 0.0211188941628804 1 S[DP]P{I|L}{I|L} 6 3 48.874 0 0 5.2469 0 0 291.13353163886876 0 291.13353163886876 0 25.31743128760553 0 0 0 1.6307196863200843 0 1.1307196863200843 0 + S[DP]P{I|L}{I|L} 5.2469 + + 195 NaN NaN 211952.1 NaN 5956 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8295 43.318 NaN 212490 35 0 48966 0.261 + 33421 YGSRLDYFQ 9 44 574.7722174630183 1147.5298819928364 2 574.7721557617188 MULTI HCD FTMS 0 0 0 8293 79956.0078125 0.3454564228207157 3 -0.09241485595703125 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 10.073929032068715 0.27331982688540024 1 TSVS{[DS]|[MA]|[CV]|TT} 6 7 36.159 0 0 3.151 0 0 553.2636585919937 0 553.2636585919937 0 3.2390874094431865 0 0 0 0.9247425010840047 0 0 0 TSVS{[DS]|[MA]|[CV]|TT} 3.151 - 88 NaN NaN 118871.1 NaN 5957 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8296 43.322 NaN 293690 35 0 63930 0.263 + -1 YMCELLGLCE 10 42 435.18370097133936 1302.5292735142182 3 435.1838684082031 MULTI HCD FTMS 0 0 0 8293 90421.1953125 0.8215668819314903 1 -0.02972412109375 3 2 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))C(Carbamidomethyl (C))ELLGLC(Carbamidomethyl (C))E_ REV__ENSG00000163467|ENST00000368254|TSACC 6.1918466704503565 0.44252927588099017 1 {M(Oxidation (M))|F} 1 -1 20.797 0 0 1.5967 0 0 1137.4502920462478 0 1137.4502920462478 0 11.332946754800375 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.5967 + + 7 + NaN NaN 129567.3 NaN 5958 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8297 43.325 NaN 160040 35 0 21931 0.261 + 21748 QAENVDVKI 9 51 508.27452488241306 1014.5344968316261 2 508.2745056152344 MULTI HCD FTMS 0 0 0 8293 80757.5859375 0.5043381890514834 3 -0.09241485595703125 4 Unmodified _QAENVDVKI_ PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant 29.84058131909904 0.11198220037953927 1 VDVK{I|L} 5 4 29.693 0 0 2.9267 0 0 442.18239829822613 0 442.18239829822613 0 5 0 0 0 1.1989700043360187 0 0 0 + VDVK{I|L} 2.9267 + + 44 + NaN NaN 114085.1 NaN 5959 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8298 43.329 NaN 191230 35 0 49281 0.261 + 18837 NAEDVQHQIL 10 41 583.7935205683563 NaN 0 583.7936401367188 PEAK HCD FTMS 0 0 0 8293 84126.5625 0.694228737673446 -1 0.033008575439453125 5 Unmodified _NAEDVQHQIL_ ENSG00000072571|ENST00000393915|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR 30.7034409873982 0.19393244365846177 1 EDVQ 4 6 14.469 0 0 1.2414 0 0 185.08556300995616 506.2733553522094 691.3589183621656 0 0 0 0 0 0.7742275032520141 0 0 0.6549471895720984 + EDVQ 1.2414 + + 15 + NaN NaN 128723 NaN 5960 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8299 43.332 NaN 321520 35 0 49253 0.264 -1 0 57 416.2435305890866 1245.70876236746 3 416.5777587890625 MULTI HCD FTMS 0 0 0 8293 50799.6328125 0.1305679635017495 -26 0.7492141723632812 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3639 0 0 1080.6297503819114 0 1080.6297503819114 0 12.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3639 - 11 + NaN NaN 139498.5 NaN 5961 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8300 43.335 NaN 304320 35 0 32841 0.261 + 19365 NPDPDAETL 9 53 486.21956346296435 970.4245739927287 2 486.21954345703125 MULTI HCD FTMS 0 0 0 8293 114560.015625 0.24387842563149983 -5 0.1484527587890625 7 Unmodified _NPDPDAETL_ ENSG00000264230|ENST00000619162|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;nc|ENSG00000276850|P13928-2|ANXA8 34.93206674587334 0.08860942999206235 1 [NP]D[DP]AET{I|L} 9 0 + 49.191 0 0 5.0691 5.0691 91.162 0 0 0 7.208859094697573 22.99349368937584 7.208859094697573 49.191381272259775 0 0.9247425010840047 0 0.3807196863200844 0.805462187404089 + + [NP]D[DP]AET{I|L} 5.0691 + + 92 NaN NaN 138772.7 NaN 5962 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8301 43.339 NaN 156310 35 0 14710 0.261 + -1 FSLEGEECE 9 64 550.218091493548 NaN 0 550.2080688476562 PEAK HCD FTMS 0 0 0 8293 14574.7587890625 1 0 0 8 Carbamidomethyl (C) _FSLEGEEC(Carbamidomethyl (C))E_ REV__ENSG00000104228|ENST00000305364|TRIM35;REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35 4.3292370932331545 0.2742679634796037 1 AVD 3 -1 12.92 0 0 1.1762 0 0 426.2295657001833 384.03620325260005 810.2657689527833 0 0 0 0 0 0.4247425010840047 0 0 0 AVD 1.1762 - 21 + NaN NaN 111633.9 NaN 5963 2336 8293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8303 43.344 NaN 1415000 35 0 265740 0.326 + 24162 RYFDPANGKF 10 74 405.53648450026185 1213.5876241009855 3 405.5364685058594 MULTI HCD FTMS 0 0 0 8302 539178.125 1 0 0 1 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 71.70789743142352 0.01556163018108538 1 PANGK{M(Oxidation (M))|F} 6 4 67.74 0 0 5.5818 0 0 581.2589934861552 0 581.2589934861552 0 54.78092914350263 0 0 0 2.4247425010840047 0 0 1.2302046884880937 + PANGK{M(Oxidation (M))|F} 5.5818 + + 565 + NaN NaN 306375.2 NaN 5964 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8304 43.348 NaN 396580 35 0 57773 0.261 + 5816 FPDAREQEI 9 66 552.7695162976828 1103.5244796621655 2 552.769775390625 MULTI HCD FTMS 0 0 0 8302 224839.546875 0.8212441162095274 -10 0.2937049865722656 2 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 80.6760300276096 0.005633624786464751 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 72.801 0 0 6.5971 6.5971 89.041 0 0 0 13.599615346615792 25.37787469514015 13.599615346615792 9.208187539523749 0 1.6435078169319297 1.6989700043360187 0.6549471895720985 0.3494850021680094 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}Q[R{M(Oxidation (M))|F}]ADPE;[DP]{M(Oxidation (M))|F}AREQ{I|L}E;{[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}[KS]DPE;{[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}GEQ{I|L}E;{[QN]|[E{I|L}]|[KN]}[AG][R{M(Oxidation (M))|F}]ADPE;[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E 6.5971;5.7627;5.7591;4.9247;4.7923;4.4034;4.0711;4.0225;3.9579;3.569 -;-;+;-;-;-;-;-;-;- + 847 NaN NaN 163984 NaN 5965 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8305 43.352 NaN 358630 35 0 46911 0.261 -1 MAVCEIQVH 9 72 543.7568698677466 1085.499186802293 2 543.7568969726562 MULTI HCD FTMS 0 0 0 8302 87828.4140625 0.8728972733269809 1 -0.033008575439453125 3 Carbamidomethyl (C) _MAVC(Carbamidomethyl (C))EIQVH_ ENSG00000106086|ENST00000449726|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;nc|ENSG00000106086|Q96JA3-3|PLEKHA8;PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant 15.847184025352803 0.2234401846867398 1 {[DS]|[MA]|[CV]|TT}MQVEW 7 -1 56.014 0 0 5.1602 0 0 0 207.11390100650627 207.11390100650627 34.2874795515468 0 0 0 0 2.055462187404089 1.3979400086720375 0 0 {[DS]|[MA]|[CV]|TT}MQVEW 5.1602 - 684 + NaN NaN 138893.8 NaN 5966 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8306 43.355 NaN 267530 35 0 54987 0.262 + -1 YMCELLGLCE 10 47 435.18370097133936 1302.5292735142182 3 435.183837890625 MULTI HCD FTMS 0 0 0 8302 68421.515625 0.621677816299416 2 -0.06269073486328125 4 2 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))C(Carbamidomethyl (C))ELLGLC(Carbamidomethyl (C))E_ REV__ENSG00000163467|ENST00000368254|TSACC 6.1918466704503565 0.44252927588099017 1 {M(Oxidation (M))|F} 1 -1 18.979 0 0 1.4571 0 0 1137.4501394583572 0 1137.4501394583572 0 15 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 1.4571 + + 2 + NaN NaN 124489.4 NaN 5967 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8307 43.358 NaN 107000 35 0 9135.3 0.261 + 8693 HGAILGTGYFC 11 45 569.771690066824 1137.528827200448 2 570.2680053710938 MULTI HCD FTMS 0 0 0 8302 31605.98046875 0.806418131247185 1 -0.033008575439453125 5 Unmodified _HGAILGTGYFC_ REV__ENSG00000103264|ENST00000311635|FBXO31;REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 2.9952420565917617 0.40578455234410343 1 T{I|L} 2 -1 15.217 0 0 1.3377 0 0 164.08345155988053 756.2892175619678 920.3726691218483 0 0 0 0 0 0 0 0.4247425010840047 0 T{I|L} 1.3377 - 23 + NaN NaN 96787.2 NaN 5968 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8308 43.362 NaN 165850 35 0 24353 0.261 -1 LYNRTMVQL 9 35 577.3053239062021 1152.5960948792042 2 577.3052978515625 MULTI HCD FTMS 0 0 0 8302 58328.1171875 1 0 0 6 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 16.149105407346934 0.22083165093524068 1 VQ{I|L} 3 -1 26.242 0 0 2.2768 0 0 794.3732777326187 0 794.3732777326187 0 19.252509456924827 0 0 0 0.3054621874040891 0 0 0 VQ{I|L} 2.2768 + + 9 NaN NaN 121581.7 NaN 5969 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8309 43.365 NaN 52046 35 0 11809 0.261 -1 RADQFEYVM 9 22 587.763538542368 1173.512524151536 2 587.7628784179688 MULTI HCD FTMS 0 0 0 8302 30803.859375 0.05354956076499784 31 -0.8532257080078125 7 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 12.240655878213236 0.2545997876781172 1 EYV{M(Oxidation (M))|F} 4 -1 40.433 0 0 3.4455 0 0 617.2962513654312 0 617.2962513654312 0 40.43305028184122 0 0 0 1 0 0 0 EYV{M(Oxidation (M))|F} 3.4455 + + 20 NaN NaN 92259.4 NaN 5970 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8310 43.368 NaN 99626 35 0 13689 0.263 -1 TIGVDFEMERF 11 40 453.87994203616904 1358.617996708707 3 454.2143859863281 MULTI HCD FTMS 0 0 0 8302 23937.958984375 0.09923578735318551 60 -1.6705055236816406 8 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.11662792887243 0.40086653484894175 1 R{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.4326 0 0 1037.4359116030414 0 1037.4359116030414 0 5.484550065040281 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.4326 + + 19 + NaN NaN 102981.7 NaN 5971 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8311 43.372 NaN 59376 35 0 13017 0.261 + -1 MYLDHAGE 8 26 476.19819113086925 NaN 0 476.1979675292969 PEAK HCD FTMS 0 0 0 8302 9977.7294921875 0.41765222043506295 4 -0.10866546630859375 9 Oxidation (M) _M(Oxidation (M))YLDHAGE_ REV__ENSG00000100413|ENST00000355209|POLR3H;REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF;REV__nc|ENSG00000100413|Q9Y535-2|POLR3H 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102450.5 NaN 5972 2337 8302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8313 43.377 NaN 1031100 35 0 300260 0.327 -1 LERSFFIRM 9 77 607.823023597064 1213.6314942609279 2 607.8013305664062 MULTI HCD FTMS 0 0 0 8312 21659.296875 1 0 0 1 Oxidation (M) _LERSFFIRM(Oxidation (M))_ ENSG00000151322|ENST00000356141|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;nc|ENSG00000151322|Q8IXF0-4|NPAS3 14.838274106304384 0.23215694253501695 1 [YR]{M(Oxidation (M))|F}DPANGK 9 -1 47.278 0 0 3.8956 0 0 0 162.0995540769383 162.0995540769383 33.34752853788089 0 0 0 0 0 0 0.8807196863200843 1.0044321917401078 [YR]{M(Oxidation (M))|F}DPANGK 3.8956 - 1218 NaN NaN 244219.2 NaN 5973 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8314 43.381 NaN 877190 35 0 111360 0.261 + 18562 MVETHDPIL 9 96 535.7628998550581 1069.511246776916 2 535.7626342773438 MULTI HCD FTMS 0 0 0 8312 245654.4375 0.9032598256802535 -3 0.09574127197265625 2 Oxidation (M) _M(Oxidation (M))VETHDPIL_ ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888-3|TP53BP1;nc|ENSG00000067369|Q12888|TP53BP1;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant 71.13359017698441 0.008721403657255008 1 P{I|L}{I|L} 3 6 27.435 0 0 2.5652 0 0 728.2784544398842 0 728.2784544398842 0 3.7763625255165323 0 0 0 0.4247425010840047 0 0 0 + P{I|L}{I|L} 2.5652 + + 426 NaN NaN 212473.6 NaN 5974 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8315 43.385 NaN 514310 35 0 48641 0.261 + 20269 NYLSHHLTI 9 76 549.2905519772995 1096.566551021399 2 549.2908325195312 MULTI HCD FTMS 0 0 0 8312 184092.6875 0.30527900983521267 -5 0.15847396850585938 3 Unmodified _NYLSHHLTI_ ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;nc|ENSG00000172239|Q9H074-2|PAIP1;nc|ENSG00000172239|Q9H074-3|PAIP1;PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant 134.295615338601 0.00034446139420701925 1 [YN]{I|L}SHH{I|L}T{I|L} 9 0 + 81.556 0 0 7.4374 7.4374 94.777 0 0 0 6.670379435263229 6.670379435263229 6.670379435263229 34.93644200413995 0 2.06295299324845 2 0.75 0.9604093769761877 + + [YN]{I|L}SHH{I|L}T{I|L};{I|L}[YN]SHH{I|L}T{I|L};[{I|L}T]{I|L}HHS[YN]{I|L};[{I|L}T]{I|L}HHS{I|L}[YN];[YN]Q{[QV]|[N{I|L}]|[RA]|[KV]}H{I|L}[VP];[YN][AG]{[QV]|[N{I|L}]|[RA]|[KV]}H{I|L}[VP];HH[VS][YQ]{I|L}T{I|L} 7.4374;4.2514;2.9202;2.2584;2.1503;1.3105;0.98659 +;-;-;-;-;-;- + 433 NaN NaN 160169.3 NaN 5975 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8316 43.388 NaN 191480 35 0 18575 0.261 + 34410 YPESESIMM 9 41 559.7224920098566 1117.4304310865132 2 559.7227172851562 MULTI HCD FTMS 0 0 0 8312 96045.53125 0.6777764607488945 -13 0.38956451416015625 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 54.773552608820026 0.024892918755467567 1 ES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 62.519 0 0 5.5949 0 0 476.1910877912125 0 476.1910877912125 0 55.52887198244136 0 0 0 2 0 0.805462187404089 0 + ES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5949 + + 110 NaN NaN 112756.4 NaN 5976 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8317 43.391 NaN 124060 35 0 19140 0.261 + 28748 TTASVVIIR 9 37 480.2978318193665 958.581110705533 2 480.2975158691406 MULTI HCD FTMS 0 0 0 8312 62155.203125 0.5936955130981988 2 -0.0526580810546875 5 Unmodified _TTASVVIIR_ ENSG00000170836|ENST00000305921|PPM1D;nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant 57.72198328787511 0.020768266150574023 1 {[DS]|[MA]|[CV]|TT}ASVV{I|L}[R{I|L}] 9 0 + 62.879 0 0 6.5596 6.5596 92.734 0 0 0 35.43182501400722 7.147642715192504 7.147642715192504 28.011525224473807 0 2.0994850021680094 0 0 0 + + {[DS]|[MA]|[CV]|TT}ASVV{I|L}[R{I|L}];{[DS]|[MA]|[CV]|TT}AVVS{I|L}[R{I|L}];{[DS]|[MA]|[CV]|TT}AVVVT[R{I|L}] 6.5596;3.6374;2.8803 +;-;- + 150 + NaN NaN 115535.8 NaN 5977 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8318 43.395 NaN 128170 35 0 7393.6 0.261 + -1 GGPSQCMQL 9 51 497.21046972613954 992.4063865190791 2 497.2105712890625 MULTI HCD FTMS 0 0 0 8312 49049.8203125 0.4146472101063231 -2 0.06273269653320312 6 Carbamidomethyl (C),Oxidation (M) _GGPSQC(Carbamidomethyl (C))M(Oxidation (M))QL_ REV__ENSG00000140326|ENST00000356231|CDAN1;REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 19.256988751693697 0.19398022840297344 1 NPDK 4 -1 37.977 0 0 3.8268 0 0 0 535.1814669244749 535.1814669244749 8.51342204748164 0 0 0 0 0.7302046884880937 0 0.3252574989159953 0 NPDK 3.8268 - 28 + NaN NaN 102701.1 NaN 5978 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8319 43.398 NaN 87093 35 0 7832.2 0.261 + 33983 YLVDCEKKL 9 46 555.7965398661327 NaN 0 555.796875 PEAK HCD FTMS 0 0 0 8312 20217.609375 0.5021055961642246 1 -0.029682159423828125 7 Unmodified _YLVDCEKKL_ ENSG00000131730|ENST00000254035|CKMT2 13.90604991867851 0.22786006501039813 1 V 1 8 15.485 0 0 1.3955 0 0 276.14772624356743 731.3428438775999 1007.4905701211674 0 0 0 0 0 0.8494850021680094 0 0 0 + V 1.3955 + + 4 + NaN NaN 99798.9 NaN 5979 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8320 43.401 NaN 158490 35 0 17414 0.261 -1 RYLSPKYIKMF 11 54 487.93555575279356 1460.7848378585807 3 487.935302734375 MULTI HCD FTMS 0 0 0 8312 39113.5 0.12276468496744848 -18 0.5314102172851562 8 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 7.846045518447754 0.3845105762037768 1 Y 1 -1 6.3515 0 0 0.4348 0 0 744.4294434267432 550.2660006158811 1294.6954440426243 0 0 0 0 0 0.3252574989159953 0 0 0 Y 0.4348 + + 19 + NaN NaN 109197 NaN 5980 2338 8312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8322 43.406 NaN 2553700 35 0 399390 0.327 + 21771 QAHLEVQQL 9 92 533.2880081197563 1064.5614633063126 2 533.2880859375 MULTI HCD FTMS 0 0 0 8321 1382151.125 0.7759351800059101 2 -0.0459747314453125 1 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 152.88595553498965 5.775426743015152E-06 1 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L} 9 4 + 92.402 0 0 8.6798 8.6798 88.611 0 0 0 2.04628427264403 15.094923698087058 2.04628427264403 2.04628427264403 0 2.086696871556164 0 1.8550083952587297 1.8882104921644451 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}QVHAQQ{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};[Q{I|L}]EVHAQQ{I|L};[Q{I|L}][HA]EVQQ{I|L} 8.6798;8.4876;7.8148;7.8148;7.8148;7.7794;7.6226;7.6226;7.5872;7.5784 -;-;-;-;-;-;-;-;-;- 3363 NaN NaN 473893.8 NaN 5981 2339 8321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8323 43.411 NaN 395090 35 0 59457 0.261 + 8991 HPEEGDLDL 9 60 512.7326878923853 1023.4508228515707 2 512.732666015625 MULTI HCD FTMS 0 0 0 8321 178211.96875 0.11418622509722517 18 -0.470794677734375 2 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 46.020951573049366 0.037705236580089195 1 {I|L}D{I|L} 3 6 40.445 0 0 3.9519 0 0 664.2456723793504 0 664.2456723793504 0 21.264100213633764 0 0 0 1 0 0.4247425010840047 0 + {I|L}D{I|L} 3.9519 + + 83 NaN NaN 146884.8 NaN 5982 2339 8321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8324 43.414 NaN 527120 35 0 117600 0.261 + 13392 KYPDRVPVI 9 84 543.8189040817973 1085.6232552303945 2 543.818603515625 MULTI HCD FTMS 0 0 0 8321 198623.25 0.1665229707833974 -9 0.27059173583984375 3 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 40.23920728925047 0.06424668180817725 1 [{I|L}P]WEVW 6 7 29.583 0 0 2.725 0 0 0 272.1876222560383 272.1876222560383 3.613654330789984 0 0 0 0 0 1.5228787452803376 0.3252574989159953 0 [{I|L}P]WEVW 2.725 - 661 NaN NaN 164917 NaN 5983 2339 8321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8325 43.418 NaN 190980 35 0 47796 0.261 + 25279 SAVVHEYAL 9 31 494.75838848793177 987.5022240426636 2 494.758544921875 MULTI HCD FTMS 0 0 0 8321 82528.0703125 0.07552947170003857 -6 0.1881561279296875 4 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 30.636539890814138 0.10832830463492794 1 A{I|L} 2 7 25.969 0 0 2.6298 0 0 785.3705125857676 0 785.3705125857676 0 0.5237875363565792 0 0 0 0.5 0 0 0 + A{I|L} 2.6298 + + 14 NaN NaN 113873.8 NaN 5984 2339 8321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8326 43.421 NaN 93031 35 0 9235.1 0.261 -1 TIGVDFEMERF 11 40 453.87994203616904 1358.617996708707 3 453.8798828125 MULTI HCD FTMS 0 0 0 8321 37584.24609375 0.11557381196257921 61 -1.6769065856933594 5 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.11662792887243 0.40086653484894175 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.4376511049945 0 1037.4376511049945 0 3.979400086720375 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 18 + NaN NaN 92910.6 NaN 5985 2339 8321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8327 43.424 NaN 48497 35 0 6690.8 0.261 + 24414 RYKPGEPITF 10 27 604.3270898263593 1206.6396267195184 2 604.3275146484375 MULTI HCD FTMS 0 0 0 8321 20037.248046875 0.65293036032609 -2 0.06269073486328125 6 Unmodified _RYKPGEPITF_ DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant;ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B 7.608950283845883 0.4350283211712914 1 E 1 9 4.6041 0 0 0.38156 0 0 326.2451747646623 748.3278292291624 1074.5730039938246 0 0 0 0 0 0 0 0 0 + E 0.38156 + + 4 + NaN NaN 90081.1 NaN 5986 2339 8321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8329 43.429 NaN 505490 35 0 95404 0.327 + 24533 RYLEQLHQL 9 51 600.3302654614056 1198.645977989611 2 600.330322265625 MULTI HCD FTMS 0 0 0 8328 244166.390625 0.26167145892139704 7 -0.1743011474609375 1 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 65.47368725323818 0.010552856507075443 1 {I|L}YREQ{I|L}HQ{I|L} 9 2 + 76.826 0 0 6.4094 6.4094 86.665 0 0 0 62.87314736501017 6.387437564371012 6.387437564371012 6.453650195120844 0 2.8494850021680094 0 0.8494850021680094 0.805462187404089 {I|L}YREQ{I|L}HQ{I|L};{I|L}E[YR]Q{I|L}HQ{I|L};[VP][HV]EQ{I|L}HQ{I|L};{I|L}YRE[AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};{I|L}E[YR][AG]{I|L}HQ{I|L};[VP][HV]EQ{I|L}H[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[YR][AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}H[AG]{I|L};[VP][HV]E[AG]{I|L}HQ{I|L} 6.4094;5.871;5.7082;5.6411;5.598;5.1027;4.9437;4.8298;4.8298;4.6521 -;-;-;-;-;-;-;-;-;- 391 + NaN NaN 184475.5 NaN 5987 2340 8328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8330 43.434 NaN 420690 35 0 35973 0.261 + 13363 KYMTAVVKL 9 79 526.8124242795875 1051.610295625975 2 526.8123168945312 MULTI HCD FTMS 0 0 0 8328 140654.875 0.4558500689301466 3 -0.082305908203125 2 Unmodified _KYMTAVVKL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 53.40400417844725 0.026808823219830042 1 VQ{M(Oxidation (M))|F} 3 8 32.747 0 0 3.114 0 0 659.4376439663771 0 659.4376439663771 0 8.846434334517141 0 0 0 0 0 0 0.6549471895720985 VQ{M(Oxidation (M))|F} 3.114 - 437 + NaN NaN 157538.5 NaN 5988 2340 8328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8331 43.437 NaN 352960 35 0 66676 0.261 + 27388 SYSSTFHSL 9 52 514.7381803018314 1027.4618076704628 2 514.738037109375 MULTI HCD FTMS 0 0 0 8328 191543.921875 1 0 0 3 Unmodified _SYSSTFHSL_ ENSG00000162825|ENST00000698833|NBPF20;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000273136|ENST00000620612|NBPF26;ENST00000491285.1_1:146215077-146250826:-|nuORF;nc|ENSG00000269713|P0DPF3-2|NBPF9;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26 58.678817012210395 0.019429721296335044 1 SS[MT] 4 6 29.253 0 0 2.8471 0 0 603.3019747586311 0 603.3019747586311 0 2.8123468415207498 0 0 0 0.9247425010840047 0 0.3807196863200844 0 SS[MT] 2.8471 - 126 NaN NaN 146517.2 NaN 5989 2340 8328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8332 43.441 NaN 152670 35 0 33874 0.261 + 9702 HVTQEDFEM 9 31 568.2399428157293 1134.4653326982584 2 568.2400512695312 MULTI HCD FTMS 0 0 0 8328 77513.9765625 0.7540263790209928 -1 0.022975921630859375 4 Unmodified _HVTQEDFEM_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 24.990960013464015 0.14443998892849796 1 D{M(Oxidation (M))|F}EM 4 5 50.433 0 0 4.4455 0 0 594.2750111310562 0 594.2750111310562 0 50.43305028184122 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + D{M(Oxidation (M))|F}EM 4.4455 + + 34 NaN NaN 113526.7 NaN 5990 2340 8328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8333 43.444 NaN 98857 35 0 17334 0.261 + 7973 GEIQEIVKT 9 38 508.7851404198642 1015.5557279065284 2 508.7848815917969 MULTI HCD FTMS 0 0 0 8328 30439.28515625 0.7179572770450494 -1 0.022975921630859375 5 Unmodified _GEIQEIVKT_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 9.5439744041441 0.27789851728676895 1 {I|L}VKT 4 5 28.66 0 0 2.8221 0 0 556.2449818341812 0 556.2449818341812 0 21.670175336041453 0 0 0 0.4247425010840047 0 0 0 + {I|L}VKT 2.8221 + + 13 NaN NaN 96163.2 NaN 5991 2340 8328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8334 43.447 NaN 21963 35 0 4612.4 0.261 -1 LCIHPEVTPL 10 15 589.8153106192221 1177.6160683052442 2 589.8150024414062 MULTI HCD FTMS 0 0 0 8328 15780.8203125 0.0323873521188511 55 -1.5321769714355469 6 Carbamidomethyl (C) _LC(Carbamidomethyl (C))IHPEVTPL_ ENSG00000104884|ENST00000391945|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF;nc|ENSG00000104884|P18074-2|ERCC2 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85188.7 NaN 5992 2340 8328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8336 43.452 NaN 2009900 35 0 621380 0.327 + 8153 GPHSPDPLL 9 68 466.74535830453345 931.4761636758669 2 466.74530029296875 MULTI HCD FTMS 0 0 0 8335 1194247.25 0.9132554448464706 1 -0.032978057861328125 1 Unmodified _GPHSPDPLL_ ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 85.35673624503755 0.00464763827098139 1 [DP]SHPGP{I|L}{I|L} 9 4 + 67.674 0 0 7.2652 7.2652 91.076 0 0 0 3.5460589794061406 34.59691590396389 3.5460589794061406 9.273174902439578 0 1.305462187404089 0 1.3807196863200843 0 [DP]SHPGP{I|L}{I|L};[DP]SHPG{I|L}P{I|L};[HS][PG]PDP{I|L}{I|L};[HS][DP]PGP{I|L}{I|L};[HS][PG]PD{I|L}P{I|L};[HS][DP]PG{I|L}P{I|L};[HS][PG]P{I|L}DP{I|L};[HS][PG]P{I|L}{I|L}[DP] 7.2652;6.2697;5.7121;5.7095;4.7166;4.714;3.4266;0.27433 -;-;-;-;-;-;-;- 456 NaN NaN 383255.2 NaN 5993 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8337 43.457 NaN 424490 35 0 53967 0.261 + 1999 DAVQREYQL 9 88 561.2821860967749 1120.5498192603498 2 561.2805786132812 MULTI HCD FTMS 0 0 0 8335 137876.375 0.4878925992340649 -4 0.10866546630859375 2 Unmodified _DAVQREYQL_ ENSG00000080986|ENST00000261597|NDC80 47.7319792270244 0.034743597693959835 1 EYQ{I|L} 4 5 38.844 0 0 3.4665 0 0 569.2910023419937 0 569.2910023419937 0 5.440228147639203 0 0 0 0.805462187404089 0 0 0.4247425010840047 + EYQ{I|L} 3.4665 + + 587 NaN NaN 149009.5 NaN 5994 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8338 43.46 NaN 82458 35 0 20926 0.261 + 33422 YGSRLDYFQ 9 28 574.7722174630183 1147.5298819928364 2 574.7720947265625 MULTI HCD FTMS 0 0 0 8335 35696.90625 0.15423138143427362 8 -0.19406509399414062 3 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 10.073929032068715 0.27331982688540024 1 VCW 3 9 28.188 0 0 2.4564 0 0 741.3486195294937 0 741.3486195294937 0 17.730012720637376 0 0 0 0.5 0 0 0 VCW 2.4564 - 40 NaN NaN 114701.2 NaN 5995 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8339 43.464 NaN 86753 35 0 6833.2 0.261 -1 QYNMNFEKL 9 36 601.7792183290833 1201.5438837249665 2 602.2808837890625 MULTI HCD FTMS 0 0 0 8335 28690.927734375 0.649732831065408 1 -0.032978057861328125 4 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-2|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 13.042465956692817 0.2476723265019929 1 KE{M(Oxidation (M))|F}N 4 -1 20.918 0 0 1.7409 0 0 148.11619844868784 532.1510714166624 680.2672698653503 0 0 0 0 0 0 0 0 0.3494850021680094 KE{M(Oxidation (M))|F}N 1.7409 - 22 + NaN NaN 110445.5 NaN 5996 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8340 43.467 NaN 83122 35 0 11120 0.261 -1 KYMLKANLI 9 42 555.3229190896382 1108.6312852460762 2 555.3225708007812 MULTI HCD FTMS 0 0 0 8335 53813.7421875 0.6037612722730439 -3 0.07565689086914062 5 Oxidation (M) _KYM(Oxidation (M))LKANLI_ ENSG00000164134|ENST00000296543|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;nc|ENSG00000164134|Q9BXJ9-4|NAA15 13.90604991867851 0.24021115267848145 1 KY{M(Oxidation (M))|F} 3 -1 22.167 0 0 1.9995 0 0 0 667.4151095025999 667.4151095025999 15.177287669604311 0 0 0 0 0.3494850021680094 0 0 0 KY{M(Oxidation (M))|F} 1.9995 + + 26 + NaN NaN 101573.2 NaN 5997 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8341 43.47 NaN 129470 35 0 14690 0.261 + 11608 IYTPLYTL 8 45 492.27434245573664 982.5341319782733 2 492.2745666503906 MULTI HCD FTMS 0 0 0 8335 23002.328125 0.4238601023178799 -1 0.022998809814453125 6 Unmodified _IYTPLYTL_ REV__ENSG00000112337|ENST00000377850|SLC17A2;REV__nc|ENSG00000112337|O00624-2|SLC17A2;REV__nc|ENSG00000112337|O00624|SLC17A2 23.1484247019978 0.4234759064137959 1 {I|L}Y 2 -1 36.454 0 0 3.7102 0 0 0 703.3534029596311 703.3534029596311 26.276362525516532 0 0 0 0 0 1.6989700043360187 0 0 {I|L}Y 3.7102 + + 16 + NaN NaN 101604.1 NaN 5998 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8342 43.474 NaN 65964 35 0 11725 0.261 -1 LAQAMETAL 9 33 482.2445349339302 962.4745169346604 2 482.2445068359375 MULTI HCD FTMS 0 0 0 8335 36081.0546875 0.6667093010305366 -2 0.0459747314453125 7 Oxidation (M) _LAQAM(Oxidation (M))ETAL_ ENSG00000181191|ENST00000374571|PJA1;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2 17.11289562659939 0.2125047172822487 1 ETA{I|L} 4 -1 41.983 0 0 4.3619 0 0 530.2523060529312 0 530.2523060529312 0 41.9825221775622 0 0 0 0.8807196863200843 0 0.4247425010840047 0 ETA{I|L} 4.3619 + + 11 NaN NaN 97227.6 NaN 5999 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8343 43.477 NaN 39197 35 0 5326.1 0.261 + -1 MCEEECELI 9 22 614.7303388813375 1227.446124829475 2 614.7296142578125 MULTI HCD FTMS 0 0 0 8335 15770.7294921875 0.5467175403507014 4 -0.10528564453125 8 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))EEEC(Carbamidomethyl (C))ELI_ REV__ENSG00000122194|ENST00000308192|PLG;REV__PLG|p.H307Ifs*64|1|0.1|ENSG00000122194|chr6:160718425-160718425|C/-|frameshift_variant 0.5247636613948944 0.34703895399870666 1 M 1 -1 4.6041 0 0 0.3751 0 0 667.08206340545 426.3016451471313 1093.3837085525813 0 0 0 0 0 0 0 0 0 M 0.3751 + + 1 + NaN NaN 92351.6 NaN 6000 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8344 43.48 NaN 46115 35 0 6799.9 0.263 + -1 IMPVIPPAM 9 34 500.7654991661999 999.5164453991998 2 500.7659912109375 MULTI HCD FTMS 0 0 0 8335 11152.671875 0.7968013344564506 -2 0.0459747314453125 9 2 Oxidation (M) _IM(Oxidation (M))PVIPPAM(Oxidation (M))_ REV__ENSG00000113649|ENST00000679501|TCERG1;REV__ENST00000507175.5_1_5:145826912-145859658:+|nuORF;REV__ENST00000513298.5_1_5:145838810-145849312:+|nuORF;REV__nc|ENSG00000113649|O14776-2|TCERG1;REV__nc|ENSG00000113649|O14776|TCERG1 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4611 0 0 834.4705755034952 0 834.4705755034952 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4611 + + 7 + NaN NaN 84221.8 NaN 6001 2341 8335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8346 43.485 NaN 686080 35 0 73899 0.327 + 19366 NPDPDAETL 9 58 486.21956346296435 970.4245739927287 2 486.2193298339844 MULTI HCD FTMS 0 0 0 8345 411761.21875 0.8765682966871331 1 -0.02632904052734375 1 Unmodified _NPDPDAETL_ ENSG00000264230|ENST00000619162|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;nc|ENSG00000276850|P13928-2|ANXA8 89.40071534611396 0.0045416704840156395 1 [NP]D[DP]AET{I|L} 9 0 + 61.695 0 0 6.3575 6.3575 85.406 0 0 0 3.679767852945943 16.478174818886373 3.679767852945943 3.679767852945943 0 1.6694451763165201 0 0.3807196863200844 1.1861818737241734 + + [NP]D[DP]AET{I|L};[DP]N[DP]AET{I|L};[DP]GG[DP]AET{I|L};[{I|L}T]EA[DP]DPN;[{I|L}T]ED[PA]DPN 6.3575;5.9783;4.2448;4.0786;3.587 +;-;-;-;- + 280 NaN NaN 194316.2 NaN 6002 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8347 43.49 NaN 498700 35 0 90462 0.261 + 24163 RYFDPANGKF 10 56 405.53648450026185 1213.5876241009855 3 405.53643798828125 MULTI HCD FTMS 0 0 0 8345 189589.859375 0.35162750598422365 5 -0.11832427978515625 2 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 38.61474834105838 0.1574278268413918 1 NAP 3 9 43.232 0 0 3.5623 0 0 350.19516160800447 578.2367403231 928.4319019311044 0 0 0 0 0 2 0 0 1.1549471895720984 NAP 3.5623 - 83 NaN NaN 172946.9 NaN 6003 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8348 43.493 NaN 558840 35 0 85068 0.261 + 2000 DAVQREYQL 9 85 561.2821860967749 1120.5498192603498 2 561.2816772460938 MULTI HCD FTMS 0 0 0 8345 175647.65625 0.6215509477761078 -3 0.07895278930664062 3 Unmodified _DAVQREYQL_ ENSG00000080986|ENST00000261597|NDC80 59.05245873256422 0.018907022117377846 1 {[DA]|[EG]}VQREYQ{I|L} 9 0 + 66.666 0 0 5.9494 5.9494 87.869 0 0 0 4.762036441594191 51.17181701517751 4.762036441594191 9.208187539523749 0 2.0356668758921828 0 0 0.4247425010840047 + + {[DA]|[EG]}VQREYQ{I|L};{[DA]|[EG]}VQREY[AG]{I|L};{[DA]|[EG]}V[AG]REYQ{I|L};{[DA]|[EG]}V[AG]REY[AG]{I|L};[Q{I|L}][DG]REYQ{I|L};{[QN]|[E{I|L}]|[KN]}[NG]REYQ{I|L};[Q{I|L}][DG]REY[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[NG][VG]EYQ{I|L};{[QN]|[E{I|L}]|[KN]}[NG]REY[AG]{I|L};{[DA]|[EG]}V[HD]{I|L}NPQ{I|L} 5.9494;5.1276;5.1276;4.3098;4.2517;4.0537;3.4299;3.2319;3.2319;3.1667 +;-;-;-;-;-;-;-;-;- + 1547 NaN NaN 169197.1 NaN 6004 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8349 43.497 NaN 316470 35 0 32089 0.261 -1 NLCRDVMQ 8 70 526.2375741714324 1050.4605954096646 2 526.7394409179688 MULTI HCD FTMS 0 0 0 8345 83933.609375 0.6389870087634018 1 -0.02632904052734375 4 Carbamidomethyl (C),Oxidation (M) _NLC(Carbamidomethyl (C))RDVM(Oxidation (M))Q_ ENSG00000197647|ENST00000550507|ZNF433;nc|ENSG00000197647|Q8N7K0|ZNF433;ZNF433|p.E413*|1|0.33|ENSG00000197647|chr19:12015630-12015631|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 EVC(Carbamidomethyl (C))[RN]VQ{M(Oxidation (M))|F} 8 -1 + 39.429 0 0 3.7535 3.7535 85.218 0 0 0 18.337607842353112 12.518119729937993 12.518119729937993 9.262137858390812 0 0 0 0 0.8494850021680094 EVC(Carbamidomethyl (C))[RN]VQ{M(Oxidation (M))|F};EV[CG][RN]VQ{M(Oxidation (M))|F};EVC(Carbamidomethyl (C))[RN]V[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[RN]V[C(Carbamidomethyl (C))N];[{I|L}T]{[DA]|[EG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V[C(Carbamidomethyl (C))N] 3.7535;2.8718;2.0631;1.6752;0.16871 -;-;-;-;- 271 + NaN NaN 124560.7 NaN 6005 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8350 43.5 NaN 538340 35 0 158070 0.262 -1 0 62 416.2435305890866 1245.70876236746 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8345 188594.84375 0.34236290643375306 -13 0.3792381286621094 5 NaN NaN 1 RY 2 -1 19.495 0 0 1.565 0 0 0 923.5236393922635 923.5236393922635 4.010234424404686 0 0 0 0 0.6307196863200843 0 0 0 RY 1.565 - 48 + NaN NaN 162556 NaN 6006 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8351 43.503 NaN 595200 35 0 102650 0.261 + 24091 RYALQMEQL 9 66 584.294840487728 1166.575128042256 2 584.2948608398438 MULTI HCD FTMS 0 0 0 8345 216336.234375 0.5632921341978862 -3 0.07895278930664062 6 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 80.6760300276096 0.005633624786464751 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 82.981 0 0 7.1132 7.1132 89.994 0 0 0 7.147642715192504 68.15044357464103 7.147642715192504 9.208187539523749 0 2.1549471895720984 0 0 0.3807196863200844 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E{I|L}Q;[YR]A{I|L}Q{M(Oxidation (M))|F}EVAA;[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E{I|L}Q;[YR]A{I|L}[AG]{M(Oxidation (M))|F}EVAA;[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L} 7.1132;6.3239;6.3239;6.2708;5.7395;5.5383;5.4815;4.9539;4.7716;4.546 +;-;-;-;-;-;-;-;-;- + 562 NaN NaN 174200.3 NaN 6007 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8352 43.507 NaN 405540 35 0 46211 0.261 + 14160 LAGSPAGDLQL 11 72 521.2824367416713 1040.5503205501425 2 521.2706909179688 MULTI HCD FTMS 0 0 0 8345 61202.6328125 0.5030227518493812 -4 0.10863494873046875 7 Unmodified _LAGSPAGDLQL_ REV__ENSG00000179044|ENST00000314586|EXOC3L1 18.373094154950223 0.29699704000378496 1 {I|L}MKD 4 -1 41.542 0 0 3.9923 0 0 0 550.2616060846311 550.2616060846311 11.620768972555595 0 0 0 0 0 1.6989700043360187 0.5 0 {I|L}MKD 3.9923 - 303 + NaN NaN 164925.7 NaN 6008 2342 8345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8354 43.512 NaN 478180 35 0 68335 0.327 + 5817 FPDAREQEI 9 74 552.7695162976828 1103.5244796621655 2 552.7694702148438 MULTI HCD FTMS 0 0 0 8353 262464.59375 0.9586725570584141 -4 0.10528182983398438 1 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 90.13494162714682 0.004522430935000059 1 {I|L}MDA 4 7 63.576 0 0 5.7612 0 0 0 670.3201387994749 670.3201387994749 16.593793813122062 0 0 0 0 1.1861818737241734 2 0.7302046884880937 0 {I|L}MDA 5.7612 - 1152 + NaN NaN 153590.1 NaN 6009 2343 8353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8355 43.516 NaN 327350 35 0 104470 0.261 + 24166 RYFDPANGKF 10 39 607.801264180245 1213.5879754272898 2 607.8012084960938 MULTI HCD FTMS 0 0 0 8353 165271.40625 0.2625018687434321 6 -0.13475799560546875 2 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 35.61225514009592 0.18348312004207498 1 DPANGK{M(Oxidation (M))|F} 7 3 58.364 0 0 4.8092 0 0 466.23301894355626 0 466.23301894355626 0 40.92941036290071 0 0 0 0.9247425010840047 0 0.8807196863200843 0 + DPANGK{M(Oxidation (M))|F} 4.8092 + + 142 NaN NaN 137494.9 NaN 6010 2343 8353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8356 43.52 NaN 85679 35 0 11704 0.261 + 23996 RVYIGRLSY 9 29 563.8217834285182 1125.6290139238363 2 563.822021484375 MULTI HCD FTMS 0 0 0 8353 30777.125 0.7968355321390256 -2 0.059307098388671875 3 Unmodified _RVYIGRLSY_ ENSG00000116350|ENST00000373795|SRSF4;ENSG00000124193|ENST00000244020|SRSF6;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6 5.731851221503515 0.3075653528928475 1 RV 2 7 19.949 0 0 1.7722 0 0 0 867.4383638971311 867.4383638971311 14.262137858390814 0 0 0 0 0.5 0 0 0 + RV 1.7722 + + 8 + NaN NaN 109408.8 NaN 6011 2343 8353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8357 43.523 NaN 82506 35 0 10080 0.261 -1 RADQFEYVM 9 35 587.763538542368 1173.512524151536 2 588.26513671875 MULTI HCD FTMS 0 0 0 8353 11681.5498046875 0.034739764555383315 37 -1.0359115600585938 4 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 13.042465956692817 0.2476723265019929 1 YV{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.0204 0 0 746.3351917951187 0 746.3351917951187 0 11.50051782809868 0 0 0 0.9247425010840047 0 0 0 YV{M(Oxidation (M))|F} 3.0204 + + 92 NaN NaN 91815.8 NaN 6012 2343 8353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8358 43.526 NaN 104000 35 0 7301 0.261 + -1 YGEACKCMY 9 41 570.7133495627347 NaN 0 570.7131958007812 PEAK HCD FTMS 0 0 0 8353 27069.263671875 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _YGEAC(Carbamidomethyl (C))KCM(Oxidation (M))Y_ REV__ENSG00000184347|ENST00000519560|SLIT3;REV__nc|ENSG00000184347|O75094-2|SLIT3;REV__nc|ENSG00000184347|O75094-3|SLIT3;REV__nc|ENSG00000184347|O75094-4|SLIT3 1.6526216038709556 0.28723846860855273 1 T{I|L} 2 -1 9.7062 0 0 0.85186 0 0 165.97024887776632 756.2888315830214 922.2590804607878 0 0 0 0 0 0 0 0.3252574989159953 0 T{I|L} 0.85186 - 27 + NaN NaN 100292.7 NaN 6013 2343 8353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8359 43.53 NaN 109530 35 0 11222 0.261 -1 SPVSDVSYM 9 41 500.7181364148631 999.4217198965263 2 500.7181396484375 MULTI HCD FTMS 0 0 0 8353 29217.732421875 0.41433848888814045 -4 0.10528182983398438 6 Oxidation (M) _SPVSDVSYM(Oxidation (M))_ ENSG00000131746|ENST00000254051|TNS4 26.88365393820708 0.12808753336095696 1 VSY{M(Oxidation (M))|F} 4 -1 49.68 0 0 4.9709 0 0 485.21211440254064 0 485.21211440254064 0 49.680475292681265 0 0 0 1.5 0 0.4247425010840047 0 VSY{M(Oxidation (M))|F} 4.9709 + + 31 NaN NaN 103122.2 NaN 6014 2343 8353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8361 43.535 NaN 1124300 35 0 98273 0.327 + 20270 NYLSHHLTI 9 93 549.2905519772995 1096.566551021399 2 549.2904663085938 MULTI HCD FTMS 0 0 0 8360 469051.03125 0.7778224997784629 1 -0.022998809814453125 1 Unmodified _NYLSHHLTI_ ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;nc|ENSG00000172239|Q9H074-2|PAIP1;nc|ENSG00000172239|Q9H074-3|PAIP1;PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 [YN]{I|L}SHH{I|L}T{I|L} 9 0 + 96.319 0 0 8.7837 8.7837 96.727 0 0 0 16.072885050791754 16.072885050791754 16.072885050791754 31.905892458001034 0 2.254432191740108 2 0.9731975075880329 1.1883753548010496 + + [YN]{I|L}SHH{I|L}T{I|L};[YQ]VSHH{I|L}T{I|L};[YN]QPH[KP]T{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[NG]GH{I|L}T{I|L};{I|L}[YN]SHH{I|L}T{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[QG]|[NA]}GH{I|L}T{I|L};[YN]QPHV{I|L}N{I|L};[YN][AG]PH[KP]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QD]|[EN]|[WG]|[KD]|[RS]}HH{I|L}T{I|L};[YN][AG]PHV{I|L}N{I|L} 8.7837;5.8741;5.1204;4.9506;4.9009;4.7482;4.3848;4.2807;3.6122;3.5451 +;-;-;-;-;-;-;-;-;- + 3532 NaN NaN 257638.7 NaN 6015 2344 8360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8362 43.539 NaN 634510 35 0 121880 0.261 + 13688 KYPHLVAGA 9 72 478.27152425840745 954.5284955836149 2 478.2715148925781 MULTI HCD FTMS 0 0 0 8360 242837.53125 0.6882841489707892 -3 0.08228683471679688 2 Unmodified _KYPHLVAGA_ ENSG00000176978|ENST00000371579|DPP7 19.438996006549623 0.19240772610395238 1 VP[NS]VVA 7 6 52.479 0 0 5.4979 0 0 0 285.13117395572505 285.13117395572505 4.822508231173913 0 0 0 0 0.4247425010840047 2 0 0 VP[NS]VVA 5.4979 - 574 + NaN NaN 185008.9 NaN 6016 2344 8360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8363 43.543 NaN 428240 35 0 46339 0.261 + 12368 KPAADADLQL 10 60 521.2824367416713 1040.5503205501425 2 521.2822265625 MULTI HCD FTMS 0 0 0 8360 95228.46875 0.7826801593941282 -2 0.04930877685546875 3 Unmodified _KPAADADLQL_ ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L 20.580933911654288 0.31860490502175054 1 {I|L}MKDW 5 9 50.662 0 0 4.8688 0 0 0 364.19834314517817 364.19834314517817 20.228787452803374 0 0 0 0 0 2 0.5 0 {I|L}MKDW 4.8688 - 196 + NaN NaN 149310.4 NaN 6017 2344 8360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8364 43.546 NaN 330280 35 0 41089 0.261 -1 RYLSPKYIKMF 11 70 487.93555575279356 1460.7848378585807 3 487.93524169921875 MULTI HCD FTMS 0 0 0 8360 77762.703125 0.24407209151208267 -12 0.3394432067871094 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 35.995811192298525 0.1627382971816456 1 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 40.165 0 0 2.7496 0 0 744.4277872035586 0 744.4277872035586 0 32.99803764475705 0 0 0 1.4247425010840047 0 0 0 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7496 + + 102 + NaN NaN 140816.2 NaN 6018 2344 8360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8365 43.549 NaN 72795 35 0 13875 0.261 + 2082 DETLSGSEL 9 43 475.7191964471947 949.4238399611894 2 475.71893310546875 MULTI HCD FTMS 0 0 0 8360 19963.509765625 0.7056408927374883 1 -0.022998809814453125 5 Unmodified _DETLSGSEL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 21.74664581756881 0.17247014374749275 1 {[ES]|[DT]|[{I|L}C]}E[KS]EE{I|L} 8 4 + 9.3462 0 0 0.98441 0.98441 84.282 0 0 0 9.346237737811764 9.346237737811764 9.346237737811764 9.346237737811764 0 0.3935078169319297 0 0.3807196863200844 0 {[ES]|[DT]|[{I|L}C]}E[KS]EE{I|L} 0.98441 - 10 NaN NaN 98337.1 NaN 6019 2344 8360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8366 43.553 NaN 40997 35 0 6161.4 0.261 + 22235 QNKPPGFI 8 27 450.74990395598377 NaN 0 450.749267578125 PEAK HCD FTMS 0 0 0 8360 12761.55078125 0.7021799891329392 1 -0.022998809814453125 6 Unmodified _QNKPPGFI_ ENST00000410023.5_1_2:102781350-102781467:+|nuORF 2.577480529830294 0.38822285293237185 1 V 1 8 6.9897 0 0 0.77708 0 0 131.0930685777177 666.3011277829047 797.3941963606223 0 0 0 0 0 0 0 0 0 V 0.77708 - 1 + NaN NaN 101882.9 NaN 6020 2344 8360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8368 43.558 NaN 1256400 35 0 318120 0.327 + 25280 SAVVHEYAL 9 70 494.75838848793177 987.5022240426636 2 494.7583312988281 MULTI HCD FTMS 0 0 0 8367 1092660.5 1 0 0 1 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 78.14939416004806 0.006451203201226903 1 {[SA]|[TG]}VV{[YC]|[HE]}YA{I|L} 9 0 + 80.697 0 0 8.1718 8.1718 95.043 0 0 0 19.631068929195408 16.478174818886373 16.478174818886373 22.503859178250778 0 2.2302046884880937 1.5228787452803376 0.7302046884880937 0 + + {[SA]|[TG]}VV{[YC]|[HE]}YA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[YC]|[HE]}YA{I|L};{[SA]|[TG]}VV{[YC]|[HE]}[{M(Oxidation (M))|F}T]V;[{I|L}A][TA]{[YC]|[HE]}YA{I|L};{I|L}[SG]V{[YC]|[HE]}YA{I|L};{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{[YC]|[HE]}YA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[YC]|[HE]}[{M(Oxidation (M))|F}T]V;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[WK]AEV;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VK{[DA]|[EG]}AEV;{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[WK]AEV 8.1718;5.8929;5.0148;4.9498;4.1354;2.973;2.7359;1.5071;1.4553;0.71906 +;-;-;-;-;-;-;-;-;- + 380 NaN NaN 283093.2 NaN 6021 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8369 43.562 NaN 1398900 35 0 435390 0.261 + 13393 KYPDRVPVI 9 67 543.8189040817973 1085.6232552303945 2 543.81884765625 MULTI HCD FTMS 0 0 0 8367 918764.625 0.7702794854363427 -3 0.07230758666992188 2 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 90.13494162714682 0.004522430935000059 1 KYPDRV 6 3 65.75 0 0 6.0565 0 0 0 324.19239391077025 324.19239391077025 12.584784656551378 0 0 0 0 1.774227503252014 0 0.5866968715561641 0.25 + KYPDRV 6.0565 + + 491 + NaN NaN 316483.3 NaN 6022 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8370 43.566 NaN 453080 35 0 83987 0.261 + 21772 QAHLEVQQL 9 64 533.2880081197563 1064.5614633063126 2 533.2880249023438 MULTI HCD FTMS 0 0 0 8367 231228.765625 0.12981108261788576 8 -0.20412445068359375 3 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 107.1870275148908 0.00340162908551068 1 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L} 9 4 + 81.806 0 0 7.6845 7.6845 87.054 0 0 0 2.04628427264403 16.478174818886373 2.04628427264403 2.04628427264403 0 1.805462187404089 0 1.3851518780601924 1.579689690656103 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L};[Q{I|L}][HA]EVQQ{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}][HA]EVQ[AG]{I|L};[Q{I|L}][HA]EV[AG]Q{I|L} 7.6845;7.4922;6.8195;6.8195;6.8195;6.7865;6.6273;6.6273;5.9215;5.9215 -;-;-;-;-;-;-;-;-;- 448 NaN NaN 153779.7 NaN 6023 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8371 43.569 NaN 210070 35 0 36534 0.261 + 8992 HPEEGDLDL 9 61 512.7326878923853 1023.4508228515707 2 512.7326049804688 MULTI HCD FTMS 0 0 0 8367 130387.65625 0.08354362712499981 24 -0.6723709106445312 4 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 46.020951573049366 0.037705236580089195 1 D{I|L}D{I|L} 4 5 41.983 0 0 4.1021 0 0 549.2173939435562 0 549.2173939435562 0 23.030097250275357 0 0 0 0.8807196863200843 0 0.4247425010840047 0 + D{I|L}D{I|L} 4.1021 + + 37 NaN NaN 111134.1 NaN 6024 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8372 43.572 NaN 261590 35 0 75967 0.262 -1 LSRRHMKVAF 10 56 420.90385866589327 1259.6897465978798 3 420.9033203125 MULTI HCD FTMS 0 0 0 8367 79058.8984375 0.3516048923393756 -10 0.2766838073730469 5 Oxidation (M) _LSRRHM(Oxidation (M))KVAF_ ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-2|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1 3.5870582119611467 0.4563168352879256 1 {I|L}AC 3 -1 19.922 0 0 1.5815 0 0 0 969.53054512759 969.53054512759 5.317431287605533 0 0 0 0 0 0 0 0 {I|L}AC 1.5815 - 14 + NaN NaN 125054.6 NaN 6025 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8373 43.576 NaN 78977 35 0 9391.8 0.261 -1 TIGVDFEMERF 11 42 453.87994203616904 1358.617996708707 3 453.88018798828125 MULTI HCD FTMS 0 0 0 8367 33827.71484375 0.10402225296000951 67 -1.873321533203125 6 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.406150317652783 0.39959678800402487 1 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 -1 23.456 0 0 1.7264 0 0 575.2798141909321 0 575.2798141909321 0 23.36696871556164 0 0 0 0.4247425010840047 0 0 0 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 1.7264 - 21 + NaN NaN 90909.8 NaN 6026 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8374 43.579 NaN 60188 35 0 5213.2 0.261 -1 TSCHTACTL 9 40 497.21046972613954 992.4063865190791 2 497.2102966308594 MULTI HCD FTMS 0 0 0 8367 41666.14453125 0.3522286213425085 5 -0.12506866455078125 7 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))HTACTL_ ENSG00000140545|ENST00000268150|MFGE8;ENST00000559259.1_1_15:89448967-89449934:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8 6.723162845929126 0.3000504726104499 1 T{I|L} 2 -1 22.959 0 0 2.3134 0 0 760.2636336655986 0 760.2636336655986 0 20.740312677277185 0 0 0 0.5 0 0 0 T{I|L} 2.3134 + + 16 NaN NaN 89883.5 NaN 6027 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8375 43.582 NaN 184370 35 0 23734 0.261 + 4320 EVTDVDSVVGR 11 45 588.298585591777 1174.582618250354 2 588.8001098632812 MULTI HCD FTMS 0 0 0 8367 32939.296875 0.5572544397843162 -3 0.07230758666992188 8 Unmodified _EVTDVDSVVGR_ DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8 57.107585691075435 0.0522316747233038 1 {NN|[MP]|[D{I|L}]|[EV]}TDVDSVV{[NV]|[RG]} 11 0 + 72.229 0 0 6.1494 6.1494 92.742 0 0 0 40.59826992806538 7.367585652254178 7.367585652254178 44.17404542804607 0 1.4049471895720984 1.5228787452803376 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}TDVDSVV{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]PV{[NV]|[RG]} 6.1494;2.3885 +;- + 146 + NaN NaN 128809.3 NaN 6028 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8376 43.585 NaN 34983 35 0 7746 0.261 + 35405 YYEEQHPEL 9 18 604.2670896750219 1206.5196264168437 2 604.266845703125 MULTI HCD FTMS 0 0 0 8367 26272.984375 0.011418418430980253 95 -2.6611328125 9 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 6.723162845929126 0.3000504726104499 1 YYE 3 6 34.705 0 0 2.8765 0 0 0 748.3288057916624 748.3288057916624 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 + YYE 2.8765 + + 2 + NaN NaN 105813.4 NaN 6029 2345 8367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8378 43.591 NaN 197550 35 0 35101 0.327 + 24534 RYLEQLHQL 9 37 600.3302654614056 1198.645977989611 2 600.3302001953125 MULTI HCD FTMS 0 0 0 8377 102362.0078125 0.10970066704863599 13 -0.3393745422363281 1 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 22.65808497894818 0.16459551161911185 1 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L} 9 4 + 51.929 0 0 4.3323 4.3323 82.279 0 0 0 1.3502935127679194 42.19659678281481 1.3502935127679194 4.247425010840047 0 1.305462187404089 0 0 0 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};[VP][HV]EQ{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR][AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}H[AG]{I|L};[VP][HV]E[AG]{I|L}HQ{I|L};[VP][HV]EQ{I|L}H[AG]{I|L} 4.3323;3.9779;3.5641;3.5641;3.2133;3.2133 -;-;-;-;-;- 90 NaN NaN 127179.3 NaN 6030 2346 8377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8379 43.595 NaN 261220 35 0 14443 0.264 -1 KMPKFKMPSF 10 73 419.55550269268406 1255.6446786782521 3 419.5556640625 MULTI HCD FTMS 0 0 0 8377 97222.1875 0.38994782391802235 -16 0.45479583740234375 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 13.51866281300042 0.3846630060559883 1 KM[KP]Y 5 -1 25.273 0 0 2.0128 0 0 0 605.2799776666624 605.2799776666624 4.0359843160042175 0 0 0 0 0.3054621874040891 0 0 0 KM[KP]Y 2.0128 - 48 + NaN NaN 118030.2 NaN 6031 2346 8377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8380 43.599 NaN 80962 35 0 10403 0.261 + 28851 TVLFRPIH 8 41 491.79587956168814 981.5772061901763 2 491.7958984375 MULTI HCD FTMS 0 0 0 8377 18070.16015625 0.5695907629477716 1 -0.013072967529296875 3 Unmodified _TVLFRPIH_ ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.5775 0 0 816.5309853423232 0 816.5309853423232 0 11.41650614351775 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5775 + + 6 + NaN NaN 112551.8 NaN 6032 2346 8377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8382 43.604 NaN 731460 35 0 151000 0.327 + 8154 GPHSPDPLL 9 68 466.74535830453345 931.4761636758669 2 466.7449951171875 MULTI HCD FTMS 0 0 0 8381 275470.6875 0.21065579615525645 7 -0.18445587158203125 1 Unmodified _GPHSPDPLL_ ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 39.957323273324995 0.06554068735427583 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WC(Carbamidomethyl (C))]P{I|L} 6 6 34.843 0 0 3.7406 0 0 0 128.07196925673512 128.07196925673512 12.250999397545428 0 0 0 0 0.7302046884880937 1.3979400086720375 0.9916440611282626 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WC(Carbamidomethyl (C))]P{I|L} 3.7406 - 216 NaN NaN 195767 NaN 6033 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8383 43.608 NaN 204320 35 0 24376 0.261 -1 KYMLKANLI 9 49 555.3229190896382 1108.6312852460762 2 555.3226318359375 MULTI HCD FTMS 0 0 0 8381 64152.45703125 0.7197560976464898 3 -0.07905197143554688 2 Oxidation (M) _KYM(Oxidation (M))LKANLI_ ENSG00000164134|ENST00000296543|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;nc|ENSG00000164134|Q9BXJ9-4|NAA15 10.073929032068715 0.27331982688540024 1 PETYQA[R{I|L}] 8 -1 49.245 0 0 4.442 0 0 132.1299738084462 0 132.1299738084462 0 29.781381439366186 0 0 0 0 0 0.7302046884880937 0.3807196863200844 PETYQA[R{I|L}] 4.442 - 180 + NaN NaN 126952.6 NaN 6034 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8384 43.612 NaN 89863 35 0 17733 0.261 + 9703 HVTQEDFEM 9 32 568.2399428157293 1134.4653326982584 2 568.23974609375 MULTI HCD FTMS 0 0 0 8381 51280.52734375 0.49883739761586715 6 -0.15810775756835938 3 Unmodified _HVTQEDFEM_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 18.373094154950223 0.20161688160436167 1 ED{M(Oxidation (M))|F}EM 5 4 42.981 0 0 3.7886 0 0 465.2350025861344 0 465.2350025861344 0 42.98073498420951 0 0 0 0.9247425010840047 0 0 0 + ED{M(Oxidation (M))|F}EM 3.7886 + + 47 NaN NaN 109323.3 NaN 6035 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8385 43.615 NaN 58589 35 0 9893.5 0.262 -1 LAQAMETAL 9 36 482.2445349339302 962.4745169346604 2 482.2443542480469 MULTI HCD FTMS 0 0 0 8381 36102.89453125 0.6671128598257905 4 -0.0988006591796875 4 Oxidation (M) _LAQAM(Oxidation (M))ETAL_ ENSG00000181191|ENST00000374571|PJA1;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2 9.38312468134398 0.279288223203164 1 A{I|L} 2 -1 20.969 0 0 2.1787 0 0 760.3420277326187 0 760.3420277326187 0 6.9897000433601875 0 0 0 0 0 0 0 A{I|L} 2.1787 + + 4 NaN NaN 87271.9 NaN 6036 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8386 43.618 NaN 107560 35 0 16395 0.261 -1 MPISSHVDL 9 50 507.7495281897986 1013.4845034463972 2 507.74969482421875 MULTI HCD FTMS 0 0 0 8381 35376.2421875 0.7815178552782619 -6 0.15130233764648438 5 Oxidation (M) _M(Oxidation (M))PISSHVDL_ ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B 37.97399986684836 0.07464525285885698 1 VD{I|L} 3 -1 33.188 0 0 3.2746 0 0 668.2956410138687 0 668.2956410138687 0 8.26606256887672 0 0 0 0.4247425010840047 0 0.4247425010840047 0 VD{I|L} 3.2746 + + 10 NaN NaN 116780.8 NaN 6037 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8387 43.622 NaN 76756 35 0 10817 0.261 -1 RGCPQEKEKSF 11 41 455.8918093728606 1364.653598718782 3 455.8916320800781 MULTI HCD FTMS 0 0 0 8381 31519.826171875 1 0 0 6 Carbamidomethyl (C) _RGC(Carbamidomethyl (C))PQEKEKSF_ ENSG00000259207|ENST00000559488|ITGB3;nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3 5.523293073838413 0.3946973793746473 1 S{M(Oxidation (M))|F} 2 -1 35.217 0 0 2.5806 0 0 1112.5446638437227 0 1112.5446638437227 0 24.731975075880328 0 0 0 1 0 0.4247425010840047 0 S{M(Oxidation (M))|F} 2.5806 + + 24 NaN NaN 97183.8 NaN 6038 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8388 43.625 NaN 53629 35 0 7680.2 0.261 + -1 MGRAPDFRR 9 32 574.2914807213936 1146.568408509587 2 574.2911376953125 MULTI HCD FTMS 0 0 0 8381 9940.95703125 0.3647405892854724 5 -0.13510894775390625 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MGRAPDFRR_ REV__CHPF2|p.G432V|1|0.43|ENSG00000033100|chr7:151237657-151237657|G/T|missense_variant;REV__ENSG00000033100|ENST00000035307|CHPF2;REV__ENSG00000123989|ENST00000243776|CHPF;REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2;REV__nc|ENSG00000123989|Q8IZ52-4|CHPF 2.0597508629832335 0.3354026079994024 1 S 1 -1 6.9897 0 0 0.60962 0 0 219.12762589415576 837.3886812799436 1056.5163071740994 0 0 0 0 0 0 0 0 0 S 0.60962 - 20 + NaN NaN 101580 NaN 6039 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8389 43.628 NaN 90006 35 0 12684 0.261 -1 FPGGKEYLM 9 36 529.2546091433542 1056.4946653535083 2 529.2538452148438 MULTI HCD FTMS 0 0 0 8381 19109.603515625 0.046058439853970505 -27 0.7583694458007812 8 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}P 2 -1 25.969 0 0 2.458 0 0 0 809.3469884029987 809.3469884029987 1.2763625255165323 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}P 2.458 + + 35 + NaN NaN 95217.7 NaN 6040 2347 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8391 43.633 NaN 405290 35 0 61966 0.327 + 2001 DAVQREYQL 9 76 561.2821860967749 1120.5498192603498 2 561.2825927734375 MULTI HCD FTMS 0 0 0 8390 134207.578125 0.4749101079014812 3 -0.06917572021484375 1 Unmodified _DAVQREYQL_ ENSG00000080986|ENST00000261597|NDC80 47.7319792270244 0.034743597693959835 1 {M(Oxidation (M))|F}EYQ{I|L} 5 5 45.701 0 0 4.0785 0 0 422.21531874824376 0 422.21531874824376 0 15.77491799837226 0 0 0 0.3494850021680094 0 0 0.4247425010840047 {M(Oxidation (M))|F}EYQ{I|L} 4.0785 - 766 NaN NaN 149470.6 NaN 6041 2348 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8392 43.638 NaN 226950 35 0 41521 0.264 + 24164 RYFDPANGKF 10 47 405.53648450026185 1213.5876241009855 3 405.5365295410156 MULTI HCD FTMS 0 0 0 8390 55273.68359375 0.10251469974556182 11 -0.2966766357421875 2 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 17.44264345198275 0.3479594151168503 1 PAN 3 7 26.682 0 0 2.1986 0 0 581.2587998578782 347.1720551195077 928.4308549773859 0 0 0 0 0 1.5 0 0 0 + PAN 2.1986 + + 53 + NaN NaN 115249.3 NaN 6042 2348 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8393 43.641 NaN 36577 35 0 8111.6 0.261 + -1 MHLHTMMAQL 10 15 630.7803603491806 1259.546167765161 2 631.2821655273438 MULTI HCD FTMS 0 0 0 8390 15105.5439453125 0.5397556609332395 -13 0.352325439453125 3 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 2.9952420565917617 0.4594494122822477 1 AQ{I|L} 3 -1 26.198 0 0 2.0799 0 0 929.3543568341812 0 929.3543568341812 0 23.723637474483468 0 0 0 0 0 0 0 AQ{I|L} 2.0799 + + 5 NaN NaN 105621.4 NaN 6043 2348 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8395 43.646 NaN 1005200 35 0 304770 0.327 -1 0 75 416.2435305890866 1245.70876236746 3 416.24346923828125 MULTI HCD FTMS 0 0 0 8394 308767.875 0.5605172707611407 -6 0.13475799560546875 1 NaN NaN 1 RY[WK]W 5 -1 36.075 0 0 2.8959 0 0 0 423.24711164223476 423.24711164223476 10.858565581929653 0 0 0 0 0.6861818737241735 1.0969100130080565 0 0.3807196863200844 RY[WK]W 2.8959 - 121 + NaN NaN 235751.1 NaN 6044 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8396 43.651 NaN 487190 35 0 81347 0.261 + 24092 RYALQMEQL 9 70 584.294840487728 1166.575128042256 2 584.2948608398438 MULTI HCD FTMS 0 0 0 8394 223117.953125 0.5809502432948372 4 -0.11534500122070312 2 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 93.93812099017352 0.0044227730261779084 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 82.089 0 0 7.0367 7.0367 89.839 0 0 0 5.6424927368725974 49.11281813478716 5.6424927368725974 9.208187539523749 0 2.322682509756042 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}Q{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]{M(Oxidation (M))|F}Q{I|L}A{[MG]|[TS]}{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}H]|[RQ]}{[MS]|[{M(Oxidation (M))|F}A]}EQ{I|L} 7.0367;6.2474;6.2474;5.4618;5.4169;4.7657;4.6313;4.6313;4.0647;3.997 +;-;-;-;-;-;-;-;-;- + 850 NaN NaN 174530.5 NaN 6045 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8397 43.654 NaN 423140 35 0 64214 0.261 + 5818 FPDAREQEI 9 70 552.7695162976828 1103.5244796621655 2 552.7693481445312 MULTI HCD FTMS 0 0 0 8394 228834.9375 0.835837594484789 2 -0.05603790283203125 3 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 90.13494162714682 0.004522430935000059 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 78.369 0 0 7.1017 7.1017 89.975 0 0 0 16.865677915492512 25.233098926917705 16.865677915492512 9.208187539523749 0 1.6237125054200234 1.6989700043360187 0.7302046884880937 0.6747425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]AR{M(Oxidation (M))|F}EQ{I|L}E;[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};[DP]AR{M(Oxidation (M))|F}E[AG]{I|L}E;[DP]AR{M(Oxidation (M))|F}EQE{I|L} 7.1017;6.2672;6.2174;5.383;4.9958;4.4139;4.1613;4.1115;3.5794;3.5296 -;-;+;-;-;-;-;-;-;- + 728 NaN NaN 146447.2 NaN 6046 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8398 43.658 NaN 573390 35 0 70787 0.262 + 6797 FPSAPDVKA 9 72 466.24753440030844 NaN 0 466.24755859375 PEAK HCD FTMS 0 0 0 8394 240735.984375 0.9309446357204216 -1 0.0131378173828125 4 Unmodified _FPSAPDVKA_ ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP 72.96794272382148 0.005289789941973842 1 PSA[DP]V 6 3 34.222 0 0 3.6779 0 0 147.06837014404874 214.11982141666252 361.1881915607113 0 0 0 0 0 2.0994850021680094 0 0.3807196863200844 0 + PSA[DP]V 3.6779 + + 259 + NaN NaN 166946.1 NaN 6047 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8399 43.661 NaN 143320 35 0 47334 0.261 + 24167 RYFDPANGKF 10 27 607.801264180245 1213.5879754272898 2 607.8011474609375 MULTI HCD FTMS 0 0 0 8394 93967.078125 0.1492486460172089 12 -0.34946441650390625 5 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 9.5439744041441 0.42184090036563754 1 M[PA]NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7 4 23.996 0 0 1.9773 0 0 450.2241383283219 0 450.2241383283219 0 13.027194418743804 0 0 0 0.5 0 0 0 M[PA]NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.9773 - 47 NaN NaN 104716.6 NaN 6048 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8400 43.664 NaN 197040 35 0 20815 0.261 -1 NLCRDVMQ 8 59 526.2375741714324 1050.4605954096646 2 526.7394409179688 MULTI HCD FTMS 0 0 0 8394 49239.609375 0.3748614046446707 8 -0.23075485229492188 6 Carbamidomethyl (C),Oxidation (M) _NLC(Carbamidomethyl (C))RDVM(Oxidation (M))Q_ ENSG00000197647|ENST00000550507|ZNF433;nc|ENSG00000197647|Q8N7K0|ZNF433;ZNF433|p.E413*|1|0.33|ENSG00000197647|chr19:12015630-12015631|-/A|frameshift_variant 12.531546534597751 0.5015908124873912 1 DVQ{M(Oxidation (M))|F} 4 -1 35.918 0 0 3.4192 0 0 543.2545234875928 0 543.2545234875928 0 18.17069316414013 0 0 0 0 0 0 0.8494850021680094 DVQ{M(Oxidation (M))|F} 3.4192 - 111 + NaN NaN 112484.9 NaN 6049 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8401 43.668 NaN 179930 35 0 30414 0.261 + 2448 DPYSDDPRL 9 41 539.2459494094348 1076.4773458856696 2 539.2451171875 MULTI HCD FTMS 0 0 0 8394 48893.96875 1 0 0 7 Unmodified _DPYSDDPRL_ ENSG00000073350|ENST00000392550|LLGL2;ENSG00000131899|ENST00000316843|LLGL1;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.S495F|1|0.33|ENSG00000073350|chr17:75569228-75569228|C/T|missense_variant;nc|ENSG00000073350|Q6P1M3-2|LLGL2 17.11289562659939 0.2125047172822487 1 S 1 8 12.128 0 0 1.1267 0 0 375.14367707285504 611.2790011041624 986.4226781770174 0 0 0 0 0 0.6643943297944485 0 0 0 + S 1.1267 + + 5 + NaN NaN 119985.8 NaN 6050 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8402 43.671 NaN 52593 35 0 6957.6 0.261 -1 EMEMTNMMD 9 35 574.1927268808539 1146.3709008285077 2 574.1925048828125 MULTI HCD FTMS 0 0 0 8394 18569.625 0.7306488652659893 -6 0.13475799560546875 8 Oxidation (M) _EMEMTNM(Oxidation (M))MD_ tr|U7SHY1|U7SHY1_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02195PE=4SV=1 0.5247636613948944 0.34703895399870666 1 S 1 -1 6.9897 0 0 0.60972 0 0 218.92785991229522 837.3886202447874 1056.3164801570827 0 0 0 0 0 0 0 0 0 S 0.60972 - 5 + NaN NaN 91695.9 NaN 6051 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8403 43.674 NaN 116890 35 0 27923 0.261 -1 MHCDGGISMIL 11 39 617.7668932242359 1233.5192335152717 2 617.7662963867188 MULTI HCD FTMS 0 0 0 8394 29995.64453125 0.43217434508481695 -2 0.04276275634765625 9 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 13.042465956692817 0.3434429782671734 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 36.198 0 0 2.9345 0 0 842.3072987287125 0 842.3072987287125 0 31.593793813122062 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.9345 + + 13 NaN NaN 97423.2 NaN 6052 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8404 43.678 NaN 22354 35 0 5282.4 0.261 + 34829 YRKKNYHW 8 12 597.8130639248762 NaN 0 597.8132934570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _YRKKNYHW_ REV__nc|ENSG00000109572|P51790-2|CLCN3 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93848 NaN 6053 2349 8394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8406 43.683 NaN 387260 35 0 63796 0.327 + 17756 MEEEAGQTSI 10 43 547.7369229256075 1093.4592929180149 2 547.7368774414062 MULTI HCD FTMS 0 0 0 8405 243537.984375 0.9596375396672256 -1 0.036289215087890625 1 Unmodified _MEEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 22.65808497894818 0.29917593477267174 1 SQTS{I|L} 5 6 58.003 0 0 5.3046 0 0 559.1938954084 0 559.1938954084 0 52.51857202580155 0 0 0 1.4247425010840047 0 0.8807196863200843 0 SQTS{I|L} 5.3046 - 40 NaN NaN 144478.7 NaN 6054 2350 8405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8407 43.687 NaN 251040 35 0 33213 0.261 -1 LPDDPRQMTL 10 50 601.2976014254127 1200.5806499176254 2 601.2977294921875 MULTI HCD FTMS 0 0 0 8405 105573.2265625 0.7403125979943468 -1 0.036289215087890625 2 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 19.625955294349634 0.3275374527965692 1 {I|L}PDD 4 -1 41.983 0 0 3.4969 0 0 0 757.3673498650465 757.3673498650465 30.555847141874892 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {I|L}PDD 3.4969 + + 87 + NaN NaN 128301.7 NaN 6055 2350 8405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8408 43.691 NaN 71482 35 0 8257.9 0.262 + 26229 SPVSDVSYM 9 22 500.7181364148631 999.4217198965263 2 500.7181091308594 MULTI HCD FTMS 0 0 0 8405 29197.703125 0.4140544521778013 3 -0.0790557861328125 3 Oxidation (M) _SPVSDVSYM(Oxidation (M))_ ENSG00000131746|ENST00000254051|TNS4 43.85829265575387 0.04763305254408404 1 VSY{M(Oxidation (M))|F} 4 5 51.938 0 0 5.1968 0 0 485.21174819160314 0 485.21174819160314 0 51.938200260161125 0 0 0 1.9247425010840047 0 0.4247425010840047 0 + VSY{M(Oxidation (M))|F} 5.1968 + + 20 NaN NaN 107004.7 NaN 6056 2350 8405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8409 43.694 NaN 142850 35 0 17860 0.261 -1 LCACEEEVM 9 55 550.2083837831977 1098.4022146331954 2 550.2078857421875 MULTI HCD FTMS 0 0 0 8405 22548.392578125 0.5122680927089597 12 -0.33618927001953125 4 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))ACEEEVM(Oxidation (M))_ ENST00000561309.1_1_15:65677198-65678348:-|nuORF 2.0597508629832335 0.3354026079994024 1 [YN]{I|L} 3 -1 22.676 0 0 2.0645 0 0 0 705.1871952272783 705.1871952272783 6.433852901485295 0 0 0 0 0 2 0 0 [YN]{I|L} 2.0645 - 77 NaN NaN 106958.2 NaN 6057 2350 8405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8410 43.697 NaN 14551 35 0 4637.7 0.261 -1 RCACEKWRK 9 8 647.3183876650669 1292.6222223969337 2 647.3191528320312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))AC(Carbamidomethyl (C))EKWRK_ ENST00000454579.5_1_2:182756982-182761662:+|nuORF 0.45834013312273997 0.3475424938045562 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95849.5 NaN 6058 2350 8405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8412 43.702 NaN 1409500 35 0 432590 0.327 + 13394 KYPDRVPVI 9 83 543.8189040817973 1085.6232552303945 2 543.8187866210938 MULTI HCD FTMS 0 0 0 8411 873599.9375 0.7324140394877754 3 -0.08565521240234375 1 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 80.6760300276096 0.005633624786464751 1 [YK]PDRVPV{I|L} 9 0 + 63.259 0 0 5.827 5.827 89.39 0 0 0 0.6333891107352798 21.839679827251203 0.6333891107352798 12.658467447160987 0 2.242992819099939 0 0 1.3996498648046138 + + [YK]PDRVPV{I|L};[VP][RD]YKPV{I|L};[YK]Q[NP]KPV{I|L};KYPD[{I|L}V][VP]R;[VP][RD]YPKV{I|L};[VP][RD]YPVK{I|L};[VP][RD][VP]YK{I|L};[YK][AG][NP]KPV{I|L};[YK]Q[NP]PKV{I|L};[YK]Q[NP]PVK{I|L} 5.827;4.661;3.818;3.5984;3.5525;3.5525;3.1859;2.9698;2.7095;2.7095 +;-;-;-;-;-;-;-;-;- + 1108 NaN NaN 319384.6 NaN 6059 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8413 43.707 NaN 413820 35 0 98211 0.261 + 25281 SAVVHEYAL 9 56 494.75838848793177 987.5022240426636 2 494.7582092285156 MULTI HCD FTMS 0 0 0 8411 274655.375 0.251363872858953 6 -0.17471694946289062 2 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 49.93300154707207 0.03166451819912738 1 {[SA]|[TG]}VV{[YC]|[HE]}YA{I|L} 9 0 + 53.751 0 0 5.4431 5.4431 84.104 0 0 0 4.137342758552691 41.444021793654855 4.137342758552691 4.2647717688075915 0 1.8807196863200843 0 0.6861818737241735 0 + + {[SA]|[TG]}VV{[YC]|[HE]}YA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[YC]|[HE]}YA{I|L} 5.4431;5.0113 +;- + 95 NaN NaN 161625.8 NaN 6060 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8414 43.71 NaN 599410 35 0 139770 0.261 + 12904 KYGFTLRA 8 67 478.27152425840745 954.5284955836149 2 478.2713317871094 MULTI HCD FTMS 0 0 0 8411 287894.40625 0.8159906558893247 4 -0.11536026000976562 3 Unmodified _KYGFTLRA_ ENSG00000086015|ENST00000361297|MAST2;ENSG00000105613|ENST00000251472|MAST1 20.453626601364224 0.4433031943603284 1 VPVR 4 7 52.339 0 0 5.4833 0 0 0 500.2157381647094 500.2157381647094 2.570071809000609 0 0 0 0 0.7302046884880937 2 0 0 VPVR 5.4833 - 289 + NaN NaN 172916.3 NaN 6061 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8415 43.714 NaN 781740 35 0 108510 0.261 + 24659 RYLSPKYIKMF 11 74 487.93555575279356 1460.7848378585807 3 488.26959228515625 MULTI HCD FTMS 0 0 0 8411 244358.71875 0.8279397897316343 -5 0.11187362670898438 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 54.25910826236882 0.06392867075910288 1 [Y{I|L}]RS[KP]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 93.039 0 0 6.3691 6.3691 92.686 0 0 0 14.907374528027901 70.33147027177971 14.907374528027901 33.39902832107995 0 2.8494850021680094 1.3979400086720375 2.1549471895720984 0 [Y{I|L}]RS[KP]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]}[R{I|L}]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT][R{I|L}]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][QA][R{I|L}]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3691;4.0827;3.3171;3.1393 -;-;-;- 456 NaN NaN 203858 NaN 6062 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8416 43.717 NaN 244440 35 0 30451 0.261 + 34411 YPESESIMM 9 45 559.7224920098566 1117.4304310865132 2 559.72216796875 MULTI HCD FTMS 0 0 0 8411 141706.796875 1 0 0 5 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 61.357469665136826 0.01568246967499496 1 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 72.384 0 0 6.4777 0 0 389.1582203595719 0 389.1582203595719 0 60.929862658764264 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.4777 + + 284 NaN NaN 124645.3 NaN 6063 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8417 43.72 NaN 218230 35 0 27819 0.261 + 21773 QAHLEVQQL 9 50 533.2880081197563 1064.5614633063126 2 533.28759765625 MULTI HCD FTMS 0 0 0 8411 65197.921875 0.036601902882428566 14 -0.4020729064941406 6 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 53.832793166522166 0.026208976789938845 1 [Q{I|L}]E[HA]VQQ{I|L} 9 4 + 60.038 0 0 5.6397 5.6397 83.838 0 0 0 3.0102999566398125 14.973024840566467 3.0102999566398125 3.0102999566398125 0 1.2396518287104437 0 0.9247425010840047 0.7302046884880937 [Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L} 5.6397;5.357;4.7748;4.7748;4.492;4.492;4.492 -;-;-;-;-;-;- 227 NaN NaN 110359.6 NaN 6064 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8418 43.724 NaN 105060 35 0 15741 0.261 + 18326 MPETYQARL 9 41 554.7761656815662 1107.5377784299324 2 554.7757568359375 MULTI HCD FTMS 0 0 0 8411 68660.3828125 0.654023494461637 5 -0.14171600341796875 7 Unmodified _MPETYQARL_ ENSG00000104889|ENST00000221486|RNASEH2A 31.26834338654808 0.10542797264966089 1 MPETYQR 7 2 53.774 0 0 4.8553 0 0 0 199.1171053522094 199.1171053522094 49.7944167232194 0 0 0 0 1.25 0 0 0.3807196863200844 MPETYQR 4.8553 - 63 + NaN NaN 96626.9 NaN 6065 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8419 43.727 NaN 222540 35 0 45129 0.261 + 27964 TFDASRTTF 9 52 523.2510800867428 1044.4876072402856 2 523.2509765625 MULTI HCD FTMS 0 0 0 8411 77805.53125 0.6406937301667105 -3 0.06917572021484375 8 Unmodified _TFDASRTTF_ ENSG00000133961|ENST00000555238|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-8|NUMB 49.52724829834842 0.03223213920720493 1 TT[WK]DTE 7 7 57.172 0 0 5.4737 0 0 165.07869155097814 0 165.07869155097814 0 41.687069798145444 0 0 0 2.274227503252014 0 1.3494850021680094 0 TT[WK]DTE 5.4737 - 113 NaN NaN 119369.1 NaN 6066 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8420 43.73 NaN 82257 35 0 15014 0.261 + 19067 NEIWPIYYFI 10 36 453.23299736831495 1356.6771627051448 3 453.2331237792969 MULTI HCD FTMS 0 0 0 8411 26055.703125 0.6501129856225369 1 -0.03630828857421875 9 Unmodified _NEIWPIYYFI_ REV__ENSG00000258223|ENST00000547058|PRSS58 5.40270961882225 0.4467063037482923 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 3 -1 22.76 0 0 1.6776 0 0 0 997.4906662783127 997.4906662783127 15.769921747127498 0 0 0 0 1 0 0.3807196863200844 0 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 1.6776 + + 10 NaN NaN 92492.8 NaN 6067 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8421 43.734 NaN 110020 35 0 12652 0.261 + 18399 MPSASMTRL 9 44 497.2457676319015 992.476982330603 2 497.2451171875 MULTI HCD FTMS 0 0 0 8411 35087.01171875 0.5656084805678631 -3 0.06917572021484375 10 Unmodified _MPSASMTRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 38.61474834105838 0.07170385841135779 1 MPSASM 6 3 56.459 0 0 5.6887 0 0 0 385.2197359674438 385.2197359674438 35.48963451112506 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 + MPSASM 5.6887 + + 38 + NaN NaN 113934.6 NaN 6068 2351 8411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8423 43.739 NaN 543460 35 0 138700 0.327 + -1 LRMQLRKWN 9 78 420.90385866589327 1259.6897465978798 3 420.9033203125 MULTI HCD FTMS 0 0 0 8422 169372.71875 0.7532646889635091 -3 0.09234619140625 1 Oxidation (M) _LRM(Oxidation (M))QLRKWN_ REV__ENSG00000047617|ENST00000682330|ANO2;REV__nc|ENSG00000047617|Q9NQ90-2|ANO2;REV__nc|ENSG00000047617|Q9NQ90|ANO2 10.799506525563784 0.2670509983294061 1 {I|L}A 2 -1 19.464 0 0 1.5451 0 0 0 1072.5200373814864 1072.5200373814864 2.4742501084004687 0 0 0 0 0 0 0 0 {I|L}A 1.5451 - 41 + NaN NaN 174385.8 NaN 6069 2352 8422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8424 43.743 NaN 131000 35 0 23675 0.261 + 8993 HPEEGDLDL 9 27 512.7326878923853 1023.4508228515707 2 512.7324829101562 MULTI HCD FTMS 0 0 0 8422 56854.8671875 0.03642876911175314 31 -0.8741073608398438 2 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 26.88365393820708 0.12808753336095696 1 {I|L}D{I|L} 3 6 40.005 0 0 3.9088 0 0 664.246028915167 0 664.246028915167 0 40.00508444608478 0 0 0 1 0 0.3807196863200844 0 + {I|L}D{I|L} 3.9088 + + 14 NaN NaN 103257.4 NaN 6070 2352 8422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8425 43.747 NaN 97983 35 0 13599 0.261 + 4321 EVTDVDSVVGR 11 38 588.298585591777 1174.582618250354 2 588.298583984375 MULTI HCD FTMS 0 0 0 8422 35800.61328125 0.373385046080779 5 -0.13840866088867188 3 Unmodified _EVTDVDSVVGR_ DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8 16.565877749689598 0.3127433757948945 1 VY[YR]Y[{M(Oxidation (M))|F}V] 7 9 15.986 0 0 1.361 0 0 166.11492985730428 0 166.11492985730428 0 1.2932569876205235 0 0 0 0 0 0 0 VY[YR]Y[{M(Oxidation (M))|F}V] 1.361 - 46 + NaN NaN 97275.5 NaN 6071 2352 8422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8426 43.75 NaN 98271 35 0 12986 0.261 + 11029 IYESLKKYL 9 34 578.8342687138748 1155.6539844945496 2 578.8339233398438 MULTI HCD FTMS 0 0 0 8422 47462.44921875 1 0 0 4 Unmodified _IYESLKKYL_ ENSG00000171612|ENST00000302692|SLC25A33 13.042465956692817 0.2476723265019929 1 {I|L}YE 3 6 48.5 0 0 4.1968 0 0 0 747.4389742486936 747.4389742486936 43.01538440272459 0 0 0 0 0.3807196863200844 2 0 0 + {I|L}YE 4.1968 + + 7 + NaN NaN 110896 NaN 6072 2352 8422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8427 43.753 NaN 264520 35 0 15342 0.261 + 31825 VYMELSQKL 9 64 563.794116262957 1125.573679592714 2 563.7935180664062 MULTI HCD FTMS 0 0 0 8422 85367.1953125 0.37065589432030527 -4 0.1054840087890625 5 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 107.09958533191995 0.0034159042678574016 1 VY{M(Oxidation (M))|F}E{I|L}SQK{I|L} 9 0 + 93.29 0 0 8.2882 8.2882 87.721 0 0 0 1.3958406980029991 1.3958406980029991 1.3958406980029991 1.3958406980029991 0 2.9916440611282624 2 0.6109243748081782 0.5994850021680094 + + VY{M(Oxidation (M))|F}E{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L};VY{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]DQK{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]D[AG]K{I|L};{M(Oxidation (M))|F}[YV]E{I|L}SQK{I|L};{M(Oxidation (M))|F}[YV]E{I|L}S[AG]K{I|L} 8.2882;8.1642;7.4702;7.3461;5.8938;5.0757;4.4857;3.6676 +;+;-;-;-;-;-;- + 414 + NaN NaN 132005 NaN 6073 2352 8422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8428 43.757 NaN 78678 35 0 18904 0.261 + 9202 HPLMYNSIY 9 30 569.2734612342365 1136.532369535273 2 569.2736206054688 MULTI HCD FTMS 0 0 0 8422 15795.5126953125 0.037105190671060655 -29 0.8077507019042969 6 Unmodified _HPLMYNSIY_ ENSG00000075223|ENST00000265361|SEMA3C 6.2057823575117 0.30397260197431997 1 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.745 0 0 0 752.3303927057249 752.3303927057249 30.088643834802156 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 - 14 + NaN NaN 101866 NaN 6074 2352 8422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8430 43.762 NaN 337810 35 0 25105 0.327 -1 KMPKFKMPSF 10 76 419.55550269268406 1255.6446786782521 3 419.5555725097656 MULTI HCD FTMS 0 0 0 8429 169359.328125 0.6792822005014243 -9 0.22712326049804688 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 29.28111348798908 0.23842404446709042 1 KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 -1 + 47.172 0 0 3.7568 3.7568 89.194 0 0 0 41.687522094009 16.532125137753436 16.532125137753436 47.17207215904928 0 1.079689690656103 0 0 0 KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 3.7568 - 121 + NaN NaN 136345 NaN 6075 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8431 43.766 NaN 153450 35 0 24166 0.261 -1 FPGGKEYLM 9 50 529.2546091433542 1056.4946653535083 2 529.2545776367188 MULTI HCD FTMS 0 0 0 8429 58054.0859375 0.13992339627785974 -21 0.5665664672851562 2 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 22.736283301280096 0.1639198954644489 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G 3 -1 29.181 0 0 2.7621 0 0 0 752.3292655334488 752.3292655334488 2.1028685019278726 0 0 0 0 0.5 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G 2.7621 + + 164 NaN NaN 109019 NaN 6076 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8432 43.77 NaN 78298 35 0 9055.4 0.261 -1 KYMLKANLI 9 45 555.3229190896382 1108.6312852460762 2 555.3223876953125 MULTI HCD FTMS 0 0 0 8429 32521.529296875 0.3648740843209236 9 -0.25713348388671875 3 Oxidation (M) _KYM(Oxidation (M))LKANLI_ ENSG00000164134|ENST00000296543|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;nc|ENSG00000164134|Q9BXJ9-4|NAA15 6.723162845929126 0.3000504726104499 1 PETYQ 5 -1 26.454 0 0 2.3862 0 0 132.1292515890969 355.2090242975219 487.3382758866188 0 0 0 0 0 0 0 0 0 PETYQ 2.3862 - 38 + NaN NaN 92842.6 NaN 6077 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8433 43.773 NaN 82619 35 0 13563 0.261 + 4322 EVTDVDSVVGR 11 33 588.298585591777 1174.582618250354 2 588.298583984375 MULTI HCD FTMS 0 0 0 8429 26627.53125 0.2777137336919802 6 -0.16819381713867188 4 Unmodified _EVTDVDSVVGR_ DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8 21.590151480376914 0.2689667140516965 1 {NN|[MP]|[D{I|L}]|[EV]}[WE]DSVV 8 5 34.659 0 0 2.9507 0 0 0 228.10988794498283 228.10988794498283 15.662290030508146 0 0 0 0 0.3054621874040891 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}[WE]DSVV 2.9507 - 67 + NaN NaN 101867.6 NaN 6078 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8434 43.776 NaN 144200 35 0 14693 0.261 -1 MPISSHVDL 9 57 507.7495281897986 1013.4845034463972 2 507.7495422363281 MULTI HCD FTMS 0 0 0 8429 45266.0703125 1 0 0 5 Oxidation (M) _M(Oxidation (M))PISSHVDL_ ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B 37.97399986684836 0.07464525285885698 1 {M(Oxidation (M))|F}VV 3 -1 34.698 0 0 3.4236 0 0 0 665.2720430963499 665.2720430963499 15.233871898888154 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 {M(Oxidation (M))|F}VV 3.4236 - 41 + NaN NaN 111418.4 NaN 6079 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8435 43.78 NaN 173580 35 0 31509 0.261 + 18960 NAIKDYEL 8 38 483.25063973100833 964.4867265288167 2 483.24993896484375 MULTI HCD FTMS 0 0 0 8429 45165.33203125 0.02959360093045686 -6 0.15810775756835938 6 Unmodified _NAIKDYEL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 58.678817012210395 0.07403930816997953 1 {[QG]|[NA]}{I|L} 3 5 41.254 0 0 4.2773 0 0 0 663.2998889067252 663.2998889067252 18.903266760442765 0 0 0 0 1 1.6989700043360187 0 0.3807196863200844 + {[QG]|[NA]}{I|L} 4.2773 + + 16 NaN NaN 118108.5 NaN 6080 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8436 43.783 NaN 18546 35 0 4402.5 0.261 -1 LYSMTHKEPE 10 11 625.7897238879694 NaN 0 625.7901611328125 PEAK HCD FTMS 0 0 0 8429 12568.251953125 0.6985555571356568 3 -0.08240890502929688 7 Oxidation (M) _LYSM(Oxidation (M))THKEPE_ ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL 2.498486711656943 0.3380459306859131 1 PE 2 -1 10.969 0 0 0.87783 0 0 147.06968393594917 873.3839205377561 1020.4536044737054 0 0 0 0 0 0 0 0 0 PE 0.87783 + + 3 + NaN NaN 89642.7 NaN 6081 2353 8429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8438 43.788 NaN 1322100 35 0 406040 0.326 -1 LRERMKNKR 9 75 416.2435305890866 1245.70876236746 3 416.24346923828125 MULTI HCD FTMS 0 0 0 8437 476154.59375 0.8643803159545975 -1 0.026348114013671875 1 Oxidation (M) _LRERM(Oxidation (M))KNKR_ ENSG00000123200|ENST00000679008|ZC3H13;nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13 12.872603262515298 0.2491399024913319 1 {I|L}R[HN]{I|L}{I|L}[DP]{I|L} 9 -1 31.449 0 0 2.5246 0 0 0 171.08887659244377 171.08887659244377 10.409934300658467 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0.4247425010840047 {I|L}R[HN]{I|L}{I|L}[DP]{I|L} 2.5246 - 296 + NaN NaN 274623.4 NaN 6082 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8439 43.793 NaN 274080 35 0 19062 0.261 + 15978 LPQHPDVEM 9 63 533.2550258784453 1064.4954988236905 2 533.2552490234375 MULTI HCD FTMS 0 0 0 8437 78771.8671875 0.7293075736444992 -2 0.049346923828125 2 Unmodified _LPQHPDVEM_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 24.990960013464015 0.14443998892849796 1 QQV[TA]KEM 8 6 32.471 0 0 3.0504 0 0 131.02909316017264 0 131.02909316017264 0 11.634256552272358 0 0 0 0.805462187404089 0 1.3252574989159953 0.805462187404089 QQV[TA]KEM 3.0504 - 247 + NaN NaN 137043.1 NaN 6083 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8440 43.796 NaN 130000 35 0 17801 0.261 -1 RYALQMEQL 9 53 584.294840487728 1166.575128042256 2 584.2946166992188 MULTI HCD FTMS 0 0 0 8437 55584.49609375 0.1447298439090366 9 -0.2637901306152344 3 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 34.221707139014875 0.09187037853496335 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 -1 + 73.026 0 0 6.2598 6.2598 88.368 0 0 0 5.6424927368725974 37.0395587027096 5.6424927368725974 9.208187539523749 0 1.8411290632962718 0 0 0 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[DC][VS]Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{M(Oxidation (M))|F}[VS][VS]Q{I|L} 6.2598;5.4705;5.4705;4.6849;1.4646;1.4484 +;-;-;-;-;- + 302 NaN NaN 105848.6 NaN 6084 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8441 43.799 NaN 131420 35 0 22021 0.264 + 24165 RYFDPANGKF 10 39 405.53648450026185 1213.5876241009855 3 405.5362854003906 MULTI HCD FTMS 0 0 0 8437 40061.59375 0.07430122234651118 17 -0.4946479797363281 4 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 13.614867670302875 0.3837631382804675 1 PA{[{M(Oxidation (M))|F}D]|MM}[{I|L}A] 6 7 21.923 0 0 1.8065 0 0 581.2593502853056 0 581.2593502853056 0 21.923487412610356 0 0 0 0.9247425010840047 0 0 0 PA{[{M(Oxidation (M))|F}D]|MM}[{I|L}A] 1.8065 - 11 NaN NaN 105144.9 NaN 6085 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8442 43.803 NaN 83870 35 0 25942 0.261 + -1 MHLHTMMAQL 10 25 630.7803603491806 1259.546167765161 2 630.7803344726562 MULTI HCD FTMS 0 0 0 8437 38014.90625 0.6827771538669372 -1 0.026348114013671875 5 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 8.745405648335112 0.42901288225909884 1 AQ{I|L} 3 -1 34.693 0 0 2.7544 0 0 929.3567784895366 0 929.3567784895366 0 34.69273760456403 0 0 0 0.4247425010840047 0 0 0.4247425010840047 AQ{I|L} 2.7544 + + 6 NaN NaN 101875.6 NaN 6086 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8443 43.806 NaN 44008 35 0 6945.1 0.261 + 8639 HESPIFKQF 9 26 566.7929505973174 1131.5713482614347 2 566.7921142578125 MULTI HCD FTMS 0 0 0 8437 27966.126953125 0.41267761356356447 -10 0.25347137451171875 6 Unmodified _HESPIFKQF_ ENSG00000042493|ENST00000263867|CAPG;nc|ENSG00000042493|P40121-2|CAPG 12.240655878213236 0.2545997876781172 1 K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3 6 13.952 0 0 1.233 0 0 710.3417225568375 0 710.3417225568375 0 -1.5051499783199063 -1.5051499783199063 0 0 0.3494850021680094 0 0 0 + K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.233 + + 8 NaN NaN 103644.8 NaN 6087 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8444 43.809 NaN 77302 35 0 8573.9 0.261 -1 TAQPQELVM 9 42 516.755045798328 1031.4955386634558 2 516.7545166015625 MULTI HCD FTMS 0 0 0 8437 22241.2578125 0.901328501985293 1 -0.029705047607421875 7 Oxidation (M) _TAQPQELVM(Oxidation (M))_ ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197 17.11289562659939 0.2125047172822487 1 {I|L}V{M(Oxidation (M))|F} 3 -1 36.682 0 0 3.5562 0 0 654.2993313029831 0 654.2993313029831 0 36.68243764792422 0 0 0 1.3494850021680094 0 0 0 {I|L}V{M(Oxidation (M))|F} 3.5562 + + 31 NaN NaN 92012.2 NaN 6088 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8445 43.813 NaN 25909 35 0 5032.5 0.261 + 35406 YYEEQHPEL 9 17 604.2670896750219 1206.5196264168437 2 604.2671508789062 MULTI HCD FTMS 0 0 0 8437 15996.6884765625 0.006952270055366737 104 -2.8041610717773438 8 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 3.5964929083625545 0.32375295897743744 1 YYE 3 6 30.458 0 0 2.5244 0 0 0 748.3286837213499 748.3286837213499 30.457574905606748 0 0 0 0 0 2 0 0 + YYE 2.5244 + + 1 + NaN NaN 89755.7 NaN 6089 2354 8437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8447 43.818 NaN 318130 35 0 47943 0.327 + 5819 FPDAREQEI 9 61 552.7695162976828 1103.5244796621655 2 552.7694091796875 MULTI HCD FTMS 0 0 0 8446 166956.703125 0.6098224801145631 8 -0.2340850830078125 1 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 63.227496030279354 0.01306643085373406 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L} 9 0 + 69.86 0 0 6.3307 6.3307 83.587 0 0 0 12.393324630099869 30.154171688421556 12.393324630099869 0.044321917401077826 0 1.6237125054200234 2 0.4247425010840047 0.3054621874040891 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]{M(Oxidation (M))|F}ARE[AG]E{I|L};[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E;[DP]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}EQE{I|L};[DP]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}EQ{I|L}E 6.3307;6.3266;5.4962;5.4922;3.7924;3.7884;2.958;2.954;2.4175;2.4135 +;-;-;-;-;-;-;-;-;- + 337 NaN NaN 136193.6 NaN 6090 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8448 43.822 NaN 223160 35 0 27570 0.262 + 6798 FPSAPDVKA 9 43 466.24753440030844 NaN 0 466.2475280761719 PEAK HCD FTMS 0 0 0 8446 123844.078125 0.47891461052460105 5 -0.14512252807617188 2 Unmodified _FPSAPDVKA_ ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP 53.832793166522166 0.036978982887966305 1 P{[SA]|[TG]}[DP]V 6 3 19.758 0 0 2.1234 0 0 147.06782548349742 214.11971460513908 361.1875400886365 0 0 0 0 0 1.75 0 0.3807196863200844 0 + P{[SA]|[TG]}[DP]V 2.1234 + + 25 + NaN NaN 125101.4 NaN 6091 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8449 43.826 NaN 76599 35 0 25274 0.261 + 24168 RYFDPANGKF 10 24 607.801264180245 1213.5879754272898 2 607.8014526367188 MULTI HCD FTMS 0 0 0 8446 49617.99609375 0.07880865174107327 18 -0.52764892578125 3 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 10.150570793230772 0.4161670024087991 1 M[PA]NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7 4 23.996 0 0 1.9773 0 0 450.2225819318375 0 450.2225819318375 0 23.996294548824366 0 0 0 0.5 0 0 0 M[PA]NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.9773 - 9 NaN NaN 99536.4 NaN 6092 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8450 43.829 NaN 93806 35 0 20890 0.261 -1 QFCMFEYPL 9 27 617.7668932242359 1233.5192335152717 2 618.2682495117188 MULTI HCD FTMS 0 0 0 8446 15173.4462890625 0.3364289487398256 2 -0.059356689453125 4 Carbamidomethyl (C) _QFC(Carbamidomethyl (C))MFEYPL_ ENST00000561721.6_1_17:75089357-75138808:+|nuORF 3.2813086475875832 0.32614229037259 1 GNE{M(Oxidation (M))|F}{I|L}{I|L} 6 -1 36.375 0 0 2.9489 0 0 542.2064104773242 0 542.2064104773242 0 36.37517525248825 0 0 0 0 0 0 0 GNE{M(Oxidation (M))|F}{I|L}{I|L} 2.9489 - 19 NaN NaN 96117.8 NaN 6093 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8451 43.832 NaN 59576 35 0 5861.1 0.261 -1 VMSQALKATF 10 35 556.2940757611307 1110.5735985890612 2 556.294189453125 MULTI HCD FTMS 0 0 0 8446 41456.078125 0.1193094824900512 -13 0.3324851989746094 5 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 23.789781309258295 0.28859042913526417 1 KAT{M(Oxidation (M))|F} 4 -1 17.391 0 0 1.5659 0 0 645.3149281232437 0 645.3149281232437 0 3.411290632962718 0 0 0 0.8182503180159344 0 0 0 KAT{M(Oxidation (M))|F} 1.5659 + + 11 NaN NaN 86819 NaN 6094 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8452 43.836 NaN 110920 35 0 16205 0.261 + -1 SYTIFCMR 8 46 539.2459494094348 1076.4773458856696 2 539.24560546875 MULTI HCD FTMS 0 0 0 8446 9649.677734375 0.19735926497836198 6 -0.17806625366210938 6 Carbamidomethyl (C) _SYTIFC(Carbamidomethyl (C))MR_ REV__ENSG00000274209|ENST00000620264|ANTXRL 5.230669730166228 0.5342319408533849 1 D 1 -1 5.4846 0 0 0.50949 0 0 132.08921653001306 826.3358858697874 958.4251023998004 0 0 0 0 0 0 0 0 0 D 0.50949 - 23 + NaN NaN 105045 NaN 6095 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8453 43.839 NaN 104220 35 0 27170 0.261 + 16571 LVDRVPTL 8 32 456.77917995887975 911.5438069845595 2 456.7791748046875 MULTI HCD FTMS 0 0 0 8446 49225.0625 0.494280651080257 -3 0.07905197143554688 7 Unmodified _LVDRVPTL_ ENSG00000265203|ENST00000584701|RBP3;RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant 32.78568957990786 0.32360605643721263 1 {I|L}V[RD][VP]T{I|L} 8 0 + 55.423 0 0 6.0802 6.0802 87.041 0 0 0 25.133418048066787 8.723637474483468 8.723637474483468 8.723637474483468 0 1.774227503252014 2 0.8807196863200843 0 + + {I|L}V[RD][VP]T{I|L};[{I|L}V][RD][VP]T{I|L};[{I|L}V][RD][TP]V{I|L} 6.0802;5.1232;4.5123 +;+;- + 13 + NaN NaN 103326.3 NaN 6096 2355 8446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8455 43.844 NaN 509170 35 0 163960 0.327 + 13395 KYPDRVPVI 9 56 543.8189040817973 1085.6232552303945 2 543.81884765625 MULTI HCD FTMS 0 0 0 8454 365762.75 0.3066504033737495 8 -0.23406600952148438 1 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 51.41523569358685 0.02959097413485123 1 KYPDRV 6 3 60.438 0 0 5.5671 0 0 0 324.19220911197505 324.19220911197505 29.230574646156064 0 0 0 0 1.805462187404089 0 0.2742275032520141 0 + KYPDRV 5.5671 + + 167 + NaN NaN 157604.8 NaN 6097 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8456 43.849 NaN 305690 35 0 41824 0.261 + 4102 ESSSPSPCTSL 11 45 547.7369229256075 1093.4592929180149 2 547.737060546875 MULTI HCD FTMS 0 0 0 8454 150819.078125 0.5942877840521837 5 -0.15171051025390625 2 Unmodified _ESSSPSPCTSL_ REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF 32.78568957990786 0.18341249061758555 1 SQTS{I|L} 5 -1 56.186 0 0 5.1383 0 0 559.1957874982437 0 559.1957874982437 0 47.774334638038454 0 0 0 1.4247425010840047 0 0.8494850021680094 0 SQTS{I|L} 5.1383 - 52 NaN NaN 132984.9 NaN 6098 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8457 43.852 NaN 143520 35 0 31360 0.261 + 25282 SAVVHEYAL 9 47 494.75838848793177 987.5022240426636 2 494.7582702636719 MULTI HCD FTMS 0 0 0 8454 101309.171875 0.09271788618239608 11 -0.3230323791503906 3 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 30.636539890814138 0.10832830463492794 1 A{I|L} 2 7 25.969 0 0 2.6298 0 0 785.369035461421 0 785.369035461421 0 2.6413688858352202 0 0 0 0.5 0 0 0 + A{I|L} 2.6298 + + 104 NaN NaN 102123.5 NaN 6099 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8458 43.855 NaN 200390 35 0 51764 0.261 + 10506 IPENNPVKL 9 42 512.295195449731 1022.5758379662619 2 512.2951049804688 MULTI HCD FTMS 0 0 0 8454 84314.359375 0.6087566746283124 -3 0.08240890502929688 4 Unmodified _IPENNPVKL_ ENSG00000158769|ENST00000368026|F11R;nc|ENSG00000158769|Q9Y624-2|F11R 40.23920728925047 0.06424668180817725 1 {I|L}PENN[VP]K{I|L} 9 0 + 47.475 0 0 4.6427 4.6427 85.648 0 0 0 36.99024053406376 9.594465368295886 9.594465368295886 9.208187539523749 0 1.6861818737241734 0 0.3807196863200844 0.3494850021680094 + + {I|L}PENN[VP]K{I|L};{I|L}PENGG[VP]K{I|L};{I|L}PEGGN[VP]K{I|L} 4.6427;3.7422;3.7422 +;-;- + 56 + NaN NaN 116735 NaN 6100 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8459 43.859 NaN 160130 35 0 17514 0.261 + 8172 GPSAEEDTPI 10 54 508.2325615825041 1014.4505702318082 2 508.2322082519531 MULTI HCD FTMS 0 0 0 8454 46193.38671875 0.8853398866888398 -2 0.056060791015625 5 Unmodified _GPSAEEDTPI_ REV__ENST00000431705.1_1_3:48885788-48886603:+|nuORF 13.042465956692817 0.38911719078024076 1 [MN]{I|L} 3 -1 10.458 0 0 1.0309 0 0 0 653.2923481292362 653.2923481292362 2.4730248405664685 0 0 0 0 0 0 0 0 [MN]{I|L} 1.0309 - 19 + NaN NaN 101762 NaN 6101 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8460 43.862 NaN 73463 35 0 8876.4 0.261 + -1 NFCSHQFC 8 46 550.2083837831977 1098.4022146331954 2 550.2081909179688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _NFC(Carbamidomethyl (C))SHQFC(Carbamidomethyl (C))_ REV__ENST00000558575.1_1_14:75761222-75762892:+|nuORF 0.7936320650641473 0.540814922690045 1 T[PG]DV 5 -1 14.278 0 0 1.2999 0 0 131.92937687186765 494.2257479303344 626.1551248022021 0 0 0 0 0 0.7059771852360797 0 0 0 T[PG]DV 1.2999 - 29 + NaN NaN 96297.1 NaN 6102 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8461 43.865 NaN 99590 35 0 11622 0.261 + 17707 MAVIDGNVM 9 38 491.2222691242905 980.429985315381 2 491.221923828125 MULTI HCD FTMS 0 0 0 8454 29844.99609375 0.34653716333437923 -11 0.2865333557128906 7 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 43.85829265575387 0.04763305254408404 1 AV{M(Oxidation (M))|F} 3 6 30.93 0 0 3.1547 0 0 645.2804432599625 0 645.2804432599625 0 8.494850021680094 0 0 0 0.9247425010840047 0 0 0 AV{M(Oxidation (M))|F} 3.1547 - 18 NaN NaN 91130 NaN 6103 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8462 43.869 NaN 44167 35 0 5169.2 0.261 -1 CRDCCMWT 8 36 574.1927268808539 1146.3709008285077 2 574.192138671875 MULTI HCD FTMS 0 0 0 8454 18095.37109375 0.7119886565407444 1 -0.033000946044921875 8 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RDC(Carbamidomethyl (C))CM(Oxidation (M))WT_ ENST00000531002.1_1_11:30605754-30618795:+|nuORF 0.6903765706972694 0.5409681170271811 1 S 1 -1 6.9897 0 0 0.60972 0 0 218.92944682635772 837.3924044244749 1056.3218512508327 0 0 0 0 0 0 0 0 0 S 0.60972 - 5 + NaN NaN 86874.7 NaN 6104 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8463 43.872 NaN 73760 35 0 7194.7 0.263 -1 TIGVDFEMERF 11 50 453.87994203616904 1358.617996708707 3 453.88018798828125 MULTI HCD FTMS 0 0 0 8454 24786.759765625 0.07622077359668916 78 -2.2097625732421875 9 Oxidation (M) _TIGVDFEM(Oxidation (M))ERF_ ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF;nc|ENSG00000109113|Q9BZG1-2|RAB34;nc|ENSG00000109113|Q9BZG1-4|RAB34 4.406150317652783 0.39959678800402487 1 R{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.1003 0 0 1037.438230938979 0 1037.438230938979 0 3.711375162600703 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1003 + + 11 + NaN NaN 107517.6 NaN 6105 2356 8454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8465 43.877 NaN 792870 35 0 118110 0.327 + 24660 RYLSPKYIKMF 11 80 487.93555575279356 1460.7848378585807 3 487.9352722167969 MULTI HCD FTMS 0 0 0 8464 307973.0625 0.9666282995966309 1 -0.023029327392578125 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 64.86049521808526 0.020395104389474644 1 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 100.73 0 0 6.8956 6.8956 93.351 0 0 0 16.320010579541034 81.20587486050027 16.320010579541034 27.836677176783667 0 2.7302046884880937 1.3979400086720375 2.1549471895720984 0 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[KP]YS{I|L}RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}A][VG]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS][YK]{I|L}RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[VG]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][QA]{I|L}RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VG][VG]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]R[VG][VG]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.8956;4.99;4.391;4.2729;4.0644;3.7661;3.6851;3.567;3.567 -;-;-;-;-;-;-;-;- 673 NaN NaN 202114.2 NaN 6106 2357 8464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8466 43.882 NaN 258360 35 0 38413 0.261 + 15357 LPDDPRQMTL 10 41 601.2976014254127 1200.5806499176254 2 601.2975463867188 MULTI HCD FTMS 0 0 0 8464 126975.6875 0.8903933710844171 6 -0.1747283935546875 2 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 42.312485326615175 0.12533928745458864 1 {I|L}PDD 4 6 49.68 0 0 4.138 0 0 0 757.3667852808013 757.3667852808013 29.503187623076954 0 0 0 0 0.9247425010840047 0 0.8494850021680094 0 + {I|L}PDD 4.138 + + 156 + NaN NaN 125275.8 NaN 6107 2357 8464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8467 43.885 NaN 173540 35 0 39182 0.262 + 27965 TFDASRTTF 9 37 523.2510800867428 1044.4876072402856 2 523.2506103515625 MULTI HCD FTMS 0 0 0 8464 94835.3046875 0.7809262932284251 3 -0.08576583862304688 3 Unmodified _TFDASRTTF_ ENSG00000133961|ENST00000555238|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-8|NUMB 43.981846655682396 0.04706587046877104 1 ADTE 4 7 46.146 0 0 4.4181 0 0 610.3077967100614 0 610.3077967100614 0 8.086681479559203 0 0 0 1.274227503252014 0 0.9247425010840047 0 ADTE 4.4181 - 81 NaN NaN 116154 NaN 6108 2357 8464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8468 43.888 NaN 163770 35 0 37683 0.261 + 30714 VPGPPYLGR 9 38 478.27152425840745 954.5284955836149 2 478.27130126953125 MULTI HCD FTMS 0 0 0 8464 78671.4140625 0.2229815424230738 10 -0.29003143310546875 4 Unmodified _VPGPPYLGR_ REV__ENST00000416255.5_1_2:101179722-101179833:+|nuORF 12.531546534597751 0.2520865569484384 1 VP 2 -1 44.776 0 0 4.6909 0 0 0 755.3846132853647 755.3846132853647 19.559771852360797 0 0 0 0 0.3807196863200844 2 0 0 VP 4.6909 + + 11 + NaN NaN 112148.2 NaN 6109 2357 8464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8469 43.892 NaN 168980 35 0 20143 0.261 + 34412 YPESESIMM 9 41 559.7224920098566 1117.4304310865132 2 559.7227172851562 MULTI HCD FTMS 0 0 0 8464 92747.5703125 0.6545033291121026 6 -0.1747283935546875 5 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 48.345845343767074 0.03388484103555672 1 ES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 63.315 0 0 5.6662 0 0 476.19148451972814 0 476.19148451972814 0 56.32576888900239 0 0 0 1.9247425010840047 0 0.8494850021680094 0 + ES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6662 + + 84 NaN NaN 112445.4 NaN 6110 2357 8464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8470 43.895 NaN 213400 35 0 39519 0.261 -1 IMAHCSLDL 9 48 538.2480244136303 1074.4814958940606 2 538.2471313476562 MULTI HCD FTMS 0 0 0 8464 39414.30078125 0.5041604729586247 -9 0.24389266967773438 6 Carbamidomethyl (C),Oxidation (M) _IM(Oxidation (M))AHC(Carbamidomethyl (C))SLDL_ AluJb_dup56968|chr8:98045693-98046014:+|1.2447364525238482|0.0002169198745066|12.49|522.0|19|2|anti-sense;ENST00000398831.7_1_22:22050099-22050438:+|nuORF 10.823927491677226 0.26684000660059787 1 {I|L}D{I|L} 3 -1 28.5 0 0 2.6524 0 0 715.2733021466812 0 715.2733021466812 0 21.510234424404686 0 0 0 0.3807196863200844 0 0 0 {I|L}D{I|L} 2.6524 + + 14 NaN NaN 124208.9 NaN 6111 2357 8464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8472 43.9 NaN 477550 35 0 29292 0.327 + 31826 VYMELSQKL 9 77 563.794116262957 1125.573679592714 2 563.7940063476562 MULTI HCD FTMS 0 0 0 8471 198986.21875 0.8639784240094089 2 -0.06273651123046875 1 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 128.93241758739586 0.0006697181619526092 1 VY{M(Oxidation (M))|F}E{I|L}SQK{I|L} 9 0 + 101.02 0 0 8.9746 8.9746 90.07 0 0 0 4.304009240123889 4.304009240123889 4.304009240123889 4.304009240123889 0 2.8979400086720375 2 0.6237125054200234 0.6747425010840047 + + VY{M(Oxidation (M))|F}E{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L};VY{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]DQK{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[Y{M(Oxidation (M))|F}]SQK{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]D[AG]K{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[Y{M(Oxidation (M))|F}]S[AG]K{I|L};{M(Oxidation (M))|F}[YV]E{I|L}SQK{I|L};{M(Oxidation (M))|F}[YV]E{I|L}S[AG]K{I|L} 8.9746;8.5922;8.1565;7.7741;6.3002;6.0277;5.4821;5.2097;4.7579;3.9398 +;+;-;-;-;-;-;-;-;- + 579 + NaN NaN 172026.7 NaN 6112 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8473 43.905 NaN 396200 35 0 28119 0.263 + 12322 KMPKFKMPSF 10 74 419.55550269268406 1255.6446786782521 3 419.55560302734375 MULTI HCD FTMS 0 0 0 8471 159594.703125 0.6401173311641085 -4 0.112091064453125 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 53.4695610476455 0.06517150602811057 1 KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 2 + 47.669 0 0 3.7964 3.7964 89.25 0 0 0 38.773043837969325 16.532125137753436 16.532125137753436 47.668884535972325 0 1.0752574989159953 0 0.2302046884880938 0 KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 3.7964 - 146 + NaN NaN 139157.1 NaN 6113 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8474 43.908 NaN 227300 35 0 20505 0.261 + -1 RDYDMVSI 8 73 507.731324707285 NaN 0 507.73126220703125 PEAK HCD FTMS 0 0 0 8471 60713.84375 1 0 0 3 Oxidation (M) _RDYDM(Oxidation (M))VSI_ REV__ENSG00000134207|ENST00000610222|SYT6;REV__nc|ENSG00000134207|Q5T7P8-2|SYT6 25.399314129420986 0.3813806174882625 1 {I|L}AND 4 -1 14.073 0 0 1.3886 0 0 131.98363222531378 465.24665247135005 597.2302846966638 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}AND 1.3886 - 45 + NaN NaN 128139.4 NaN 6114 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8475 43.912 NaN 89216 35 0 6168 0.261 + 20161 NYKKFYEQF 9 36 633.8114714375128 1265.6083899418254 2 633.8112182617188 MULTI HCD FTMS 0 0 0 8471 45052.640625 0.12486440110303126 -5 0.13843917846679688 4 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 51.76506608216692 0.029101585378392445 1 NYKK{M(Oxidation (M))|F}YEQ{M(Oxidation (M))|F} 9 0 + 74.715 0 0 5.9035 5.9035 85.451 0 0 0 29.20818753952375 5.5102999566398125 5.5102999566398125 5.5102999566398125 0 1.8539171939081172 2 0 0.7302046884880937 + + NYKK{M(Oxidation (M))|F}YEQ{M(Oxidation (M))|F};NYKK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}QE 5.9035;5.4681 +;- + 60 + NaN NaN 96983.1 NaN 6115 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8476 43.915 NaN 88644 35 0 18344 0.261 -1 HPFFKDMSL 9 31 569.2734612342365 1136.532369535273 2 569.2730712890625 MULTI HCD FTMS 0 0 0 8471 28395.3828125 0.06670350711365283 -23 0.6192474365234375 5 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 8.155526934196011 0.2891920862272901 1 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3298433893186 752.3298433893186 28.723637474483468 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 8 + NaN NaN 97180.6 NaN 6116 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8477 43.918 NaN 40295 35 0 5456.6 0.261 + 4338 EVVRLLVTR 9 24 542.8455002231602 1083.6764475131204 2 542.844970703125 MULTI HCD FTMS 0 0 0 8471 32085.74609375 0.26477065805281197 7 -0.20432662963867188 6 Unmodified _EVVRLLVTR_ ENSG00000213977|ENST00000225525|TAX1BP3 11.494710602746466 0.2610445893512368 1 R 1 8 15.485 0 0 1.4289 0 0 909.5648732717126 0 909.5648732717126 0 2.2969624387961574 0 0 0 0 0 0 0 + R 1.4289 + + 5 + NaN NaN 82831 NaN 6117 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8478 43.922 NaN 108200 35 0 24446 0.261 -1 RYKLYQEMF 9 37 647.3183876650669 1292.6222223969337 2 647.8196411132812 MULTI HCD FTMS 0 0 0 8471 21031.6328125 0.30344998999602657 -7 0.19774627685546875 7 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 17.11289562659939 0.2125047172822487 1 {I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 6 -1 26.898 0 0 2.0809 0 0 447.25901992011876 0 447.25901992011876 0 26.897737521010825 0 0 0 0.3252574989159953 0 0 0 {I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 2.0809 - 67 NaN NaN 93606.2 NaN 6118 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8479 43.925 NaN 90374 35 0 11976 0.264 -1 0 49 468.7665269487013 1871.0370019284053 4 468.766845703125 MULTI HCD FTMS 0 0 0 8471 29566.81640625 0.5539497002499655 13 -0.3825569152832031 8 NaN NaN 1 R 1 -1 12.218 0 0 0.65303 0 0 1696.9251530287943 0 1696.9251530287943 0 5.228787452803374 0 0 0 0 0 0 0 R 0.65303 - 8 + NaN NaN 91975.7 NaN 6119 2358 8471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8481 43.93 NaN 1849500 35 0 266590 0.327 + 895 AYAPPPHVI 9 82 482.76605122423734 963.5175495152747 2 483.25042724609375 MULTI HCD FTMS 0 0 0 8480 57768.24609375 0.4261531778841953 -7 0.191192626953125 1 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 20.871210003555333 0.18003371494288972 1 {[QG]|[NA]}{I|L}KDYE 7 8 53.096 0 0 5.5107 0 0 0 127.10250035840694 127.10250035840694 14.246972714976494 0 0 0 0 0 1.6989700043360187 0.3252574989159953 1.3169015600442577 {[QG]|[NA]}{I|L}KDYE 5.5107 - 532 NaN NaN 367628.4 NaN 6120 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8482 43.934 NaN 1264500 35 0 385500 0.261 -1 0 91 416.2435305890866 1245.70876236746 3 416.2434997558594 MULTI HCD FTMS 0 0 0 8480 497727.0625 0.9035415833219685 4 -0.12194442749023438 2 NaN NaN 1 {I|L}{M(Oxidation (M))|F}[WK]{I|L}[DP]{I|L}R 9 -1 33.17 0 0 2.6627 0 0 59.04780834905393 0 59.04780834905393 0 7.953030950225546 0 0 0 0.805462187404089 0 0.3252574989159953 0.7302046884880937 {I|L}{M(Oxidation (M))|F}[WK]{I|L}[DP]{I|L}R 2.6627 - 184 + NaN NaN 275729.2 NaN 6121 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8483 43.938 NaN 573540 35 0 137730 0.462 + -1 LMSPLSLSQRL 11 66 420.90385866589327 1259.6897465978798 3 420.9032897949219 MULTI HCD FTMS 0 0 0 8480 167807.421875 0.7463032203611022 4 -0.12194442749023438 3 Oxidation (M) _LM(Oxidation (M))SPLSLSQRL_ REV__ENSG00000076382|ENST00000321765|SPAG5 6.623454094837244 0.3898724468670146 1 {I|L}A 2 -1 19.464 0 0 1.5451 0 0 0 1072.5181302374476 1072.5181302374476 2.4742501084004687 0 0 0 0 0 0 0 0 {I|L}A 1.5451 - 59 + NaN NaN 175216.7 NaN 6122 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8484 43.945 NaN 1044400 35 0 173100 0.261 -1 KMVEVQNQQF 10 77 422.87649346539007 1265.6076509963702 3 422.8763732910156 MULTI HCD FTMS 0 0 0 8480 329544.28125 0.3518605060558321 -4 0.11214065551757812 4 Oxidation (M) _KM(Oxidation (M))VEVQNQQF_ ENSG00000102683|ENST00000218867|SGCG 8.444304893310646 0.4306066564229251 1 Q{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.3875 0 0 972.471536043944 0 972.471536043944 0 16.94537812595911 0 0 0 0.5 0 0 0.4247425010840047 Q{M(Oxidation (M))|F} 2.3875 + + 51 NaN NaN 259193.5 NaN 6123 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8485 43.948 NaN 258820 35 0 27811 0.261 + 26109 SPISSDQSL 9 51 467.22978159020704 932.4450102472141 2 467.2294921875 MULTI HCD FTMS 0 0 0 8480 126306.4140625 0.6492681486179255 -2 0.052783966064453125 5 Unmodified _SPISSDQSL_ ENSG00000125686|ENST00000300651|MED1 66.45667989310934 0.010234776021261575 1 [{I|L}P]SSSDQS{I|L} 9 2 + 53.4 0 0 5.7269 5.7269 83.213 0 0 0 1.249387366082999 14.973024840566467 1.249387366082999 1.249387366082999 0 1.3494850021680094 0 0.7302046884880937 0.3252574989159953 [{I|L}P]SSSDQS{I|L};{[TV]|[{I|L}S]}PSSDQS{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[TV]|[{I|L}S]}SSPS{I|L};[{I|L}P]SSSD[AG]S{I|L};{[TV]|[{I|L}S]}PSSD[AG]S{I|L};[{I|L}P]SSSD[{I|L}T]N;{[TV]|[{I|L}S]}PSSD[{I|L}T]N;{[QD]|[EN]|[WG]|[KD]|[RS]}{[TV]|[{I|L}S]}EAAS{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[TV]|[{I|L}S]}SS{I|L}[PS];{[QD]|[EN]|[WG]|[KD]|[RS]}{[TV]|[{I|L}S]}E[QT]{I|L} 5.7269;5.5929;4.6666;4.3906;4.2566;2.6935;2.5595;2.2421;1.1216;0.60286 -;-;-;-;-;-;-;-;-;- 242 NaN NaN 114143.6 NaN 6124 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8486 43.951 NaN 185720 35 0 26565 0.261 -1 FPGGKEYLM 9 65 529.2546091433542 1056.4946653535083 2 529.2545776367188 MULTI HCD FTMS 0 0 0 8480 97736.8515625 0.235567781169667 -15 0.39531707763671875 6 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 26.268140514670165 0.13340543277302316 1 {M(Oxidation (M))|F}PG{[{M(Oxidation (M))|F}D]|MM}[KS]{I|L}{M(Oxidation (M))|F} 9 -1 + 44.855 0 0 4.2457 4.2457 81.131 0 0 0 16.746199743006045 15.915149811213496 15.915149811213496 2.0289375146764854 0 1.774227503252014 0 0 0 {M(Oxidation (M))|F}PG{[{M(Oxidation (M))|F}D]|MM}[KS]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}PG{[{M(Oxidation (M))|F}D]|MM}[KT]V{M(Oxidation (M))|F} 4.2457;4.0536 -;- 155 + NaN NaN 115896.9 NaN 6125 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8487 43.955 NaN 554930 35 0 73429 0.261 + 16026 LPSAPDPRLP 10 82 531.8007008002107 1061.5868486672214 2 531.8005981445312 MULTI HCD FTMS 0 0 0 8480 93423.84375 0.7558638419437187 -5 0.141845703125 7 Unmodified _LPSAPDPRLP_ ENST00000331203.6_1_2:112896141-112922743:+|nuORF 20.41453444215458 0.3201613495159799 1 {I|L}P[HC]N{I|L}K 7 7 37.909 0 0 3.571 0 0 0 253.13111292056877 253.13111292056877 17.477408794145916 0 0 0 0 1.0629529932484498 1.6989700043360187 0 0.3054621874040891 {I|L}P[HC]N{I|L}K 3.571 - 338 + NaN NaN 166971.4 NaN 6126 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8488 43.958 NaN 52497 35 0 7425.4 0.261 -1 GNYTCHCPF 9 29 578.2218690370324 1154.4291851408648 2 578.2215576171875 MULTI HCD FTMS 0 0 0 8480 4930.90966796875 0.17120187768148665 1 -0.03298187255859375 8 2 Carbamidomethyl (C) _GNYTC(Carbamidomethyl (C))HC(Carbamidomethyl (C))PF_ CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-2|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-4|CRB1;nc|ENSG00000134376|P82279-5|CRB1 0.6014990680409731 0.3464572424761564 1 V 1 -1 11.99 0 0 1.0386 0 0 240.02453533793351 812.3126314752561 1052.3371668131897 0 0 0 0 0 0.5 0 0 0 V 1.0386 - 2 + NaN NaN 108568.8 NaN 6127 2359 8480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8490 43.963 NaN 214560 35 0 33247 0.327 + 5820 FPDAREQEI 9 57 552.7695162976828 1103.5244796621655 2 552.769775390625 MULTI HCD FTMS 0 0 0 8489 108692.40625 0.39700755650025443 13 -0.3825263977050781 1 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 38.61474834105838 0.07170385841135779 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QV]|[N{I|L}]|[RA]|[KV]}EQ{I|L}E 9 2 + 58.852 0 0 5.3331 5.3331 84.714 0 0 0 10.391362274856917 26.640749640939916 10.391362274856917 6.064921830680703 0 1 1.5228787452803376 0.7302046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QV]|[N{I|L}]|[RA]|[KV]}EQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QV]|[N{I|L}]|[RA]|[KV]}EQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QV]|[N{I|L}]|[RA]|[KV]}E[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QV]|[N{I|L}]|[RA]|[KV]}E[AG]E{I|L};[DP]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}EQ{I|L}E;[DP]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}EQE{I|L};[DP]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}E[AG]{I|L}E;[DP]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}E[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}[EP]YPE;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}[EP]{M(Oxidation (M))|F}{I|L}E 5.3331;4.7835;4.4987;3.9491;3.299;2.7494;2.4645;1.9149;0.73585;0.34338 -;+;-;-;-;-;-;-;-;- + 233 NaN NaN 122373.3 NaN 6128 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8491 43.967 NaN 568810 35 0 77950 0.261 + 15515 LPDPAPSIPR 10 83 531.8007008002107 1061.5868486672214 2 531.8004760742188 MULTI HCD FTMS 0 0 0 8489 95832.7421875 0.7753535049112732 -4 0.11876678466796875 2 Unmodified _LPDPAPSIPR_ REV__ENST00000551650.1_1_12:104238130-104238388:+|nuORF 21.536976647645854 0.3096624038397699 1 {I|L}P[HC]N{I|L}{I|L} 7 -1 34.948 0 0 3.2921 0 0 0 268.14267908267817 268.14267908267817 24.151195111796362 0 0 0 0 1.0484550065040281 1.3979400086720375 0 0.3494850021680094 {I|L}P[HC]N{I|L}{I|L} 3.2921 - 235 + NaN NaN 172180.2 NaN 6129 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8492 43.971 NaN 321090 35 0 71925 0.261 + 15994 LPQSKETLL 9 58 514.8029958939343 1027.5914388546685 2 514.8027954101562 MULTI HCD FTMS 0 0 0 8489 139093.546875 0.37692704338198646 -3 0.08576583862304688 3 Unmodified _LPQSKETLL_ ENSG00000148297|ENST00000343730|MED22;ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22 65.47368725323818 0.010552856507075443 1 [{I|L}P]QSKET{I|L}{I|L} 9 0 + 72.062 0 0 7.0127 7.0127 89.803 0 0 0 2.649087242336776 41.27181857013532 2.649087242336776 9.208187539523749 0 1.742992819099939 1.6989700043360187 0.6549471895720984 0 + + [{I|L}P]QSKET{I|L}{I|L};[{I|L}P][AG]SKET{I|L}{I|L};[QP]{I|L}SKET{I|L}{I|L};[QP][KS]{I|L}ET{I|L}{I|L};[{I|L}T]{[QN]|[E{I|L}]|[KN]}PET{I|L}{I|L};[{I|L}T]{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]}P{I|L}{I|L};[{I|L}T]{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]}{I|L}P{I|L} 7.0127;6.1166;4.1925;3.3963;2.4771;1.0229;0.48368 +;-;-;-;-;-;- + 268 NaN NaN 135905.9 NaN 6130 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8493 43.974 NaN 74221 35 0 21801 0.261 + -1 MHLHTMMAQL 10 19 630.7803603491806 1259.546167765161 2 630.7803344726562 MULTI HCD FTMS 0 0 0 8489 47426.83984375 0.8518227695331665 5 -0.14159011840820312 4 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 13.042465956692817 0.38911719078024076 1 AQ{I|L} 3 -1 35.445 0 0 2.8141 0 0 929.35356337715 0 929.35356337715 0 35.44531259372398 0 0 0 0.5 0 0 0.4247425010840047 AQ{I|L} 2.8141 + + 7 NaN NaN 101899 NaN 6131 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8494 43.978 NaN 46451 35 0 7987.8 0.261 + -1 YLARMQEQL 9 31 584.294840487728 1166.575128042256 2 584.2944946289062 MULTI HCD FTMS 0 0 0 8489 30635.150390625 0.07976721650380425 15 -0.4386138916015625 5 Oxidation (M) _YLARM(Oxidation (M))QEQL_ REV__DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;REV__ENSG00000096696|ENST00000379802|DSP;REV__nc|ENSG00000096696|P15924-2|DSP;REV__nc|ENSG00000096696|P15924-3|DSP 13.90604991867851 0.24021115267848145 1 [Y{I|L}]N{I|L}Q{M(Oxidation (M))|F}EQ 8 -1 52.115 0 0 4.4674 0 0 0 128.0737336081128 128.0737336081128 25.82986110380645 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]N{I|L}Q{M(Oxidation (M))|F}EQ 4.4674 - 102 NaN NaN 93536 NaN 6132 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8495 43.981 NaN 153300 35 0 12065 0.261 + 26925 SYLEKVRAL 9 63 539.8162211157079 1077.6178892982157 2 539.8163452148438 MULTI HCD FTMS 0 0 0 8489 22320.294921875 0.6064496083387417 3 -0.08896255493164062 6 Unmodified _SYLEKVRAL_ CON__ENSEMBL:ENSP00000377550;CON__P13646-1;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;ENSG00000171401|ENST00000246635|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;nc|ENSG00000171401|P13646-3|KRT13 17.11289562659939 0.2125047172822487 1 VKE{I|L}[MT] 6 8 25.45 0 0 2.3617 0 0 358.23228652168126 0 358.23228652168126 0 11.638115730523138 0 0 0 0.3054621874040891 0 0 0 VKE{I|L}[MT] 2.3617 - 140 NaN NaN 105911.9 NaN 6133 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8496 43.984 NaN 77161 35 0 10237 0.261 + 35384 YYDPHQATF 9 29 571.2511404170942 1140.4877279009884 2 571.2500610351562 MULTI HCD FTMS 0 0 0 8489 41769.10546875 1 0 0 7 Unmodified _YYDPHQATF_ ENSG00000100731|ENST00000304743|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF;nc|ENSG00000100731|Q96RV3-2|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 24.990960013464015 0.14443998892849796 1 YY[Y{I|L}]P[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 8 6 + 51.655 0 0 4.5292 4.5292 81.316 0 0 0 1.210149894766701 35.20181229336984 1.210149894766701 1.5321251377534395 0 1.5 2 0 0 YY[Y{I|L}]P[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F};YY[Y{I|L}]PD{[HG]|PP}N;YYDP[Y{I|L}]{[HG]|PP}N 4.5292;4.3949;4.3949 -;-;- 26 NaN NaN 100394.7 NaN 6134 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8497 43.987 NaN 26547 35 0 6430.6 0.261 -1 AENAEFMRNF 10 17 622.7720887551745 1243.529624577149 2 622.7722778320312 MULTI HCD FTMS 0 0 0 8489 14295.1611328125 0.49835041216545667 2 -0.055957794189453125 8 Oxidation (M) _AENAEFM(Oxidation (M))RNF_ ENSG00000100292|ENST00000216117|HMOX1 2.735195868890462 0.4608258780945842 1 E[YG]{M(Oxidation (M))|F} 4 -1 16.198 0 0 1.3026 0 0 729.3278065412125 0 729.3278065412125 0 16.197887582883936 0 0 0 0 0 0 0 E[YG]{M(Oxidation (M))|F} 1.3026 - 2 NaN NaN 86633.5 NaN 6135 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8498 43.991 NaN 83224 35 0 11066 0.261 + 35377 YYDKHFTEF 9 34 625.2802824830464 1248.5460120328928 2 625.27880859375 MULTI HCD FTMS 0 0 0 8489 39648.0703125 0.5786771625422852 -2 0.06273651123046875 9 Unmodified _YYDKHFTEF_ ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A 36.506200033944 0.08138327636155518 1 YY[QP]QK{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 5 + 64.09 0 0 5.1332 5.1332 86.474 0 0 0 14.397737521010825 45.36683765109139 14.397737521010825 9.208187539523749 0 1 2 0.4247425010840047 0 YY[QP]QK{M(Oxidation (M))|F}E{M(Oxidation (M))|F};YY[QP][AG]K{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QK{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[AG]K{M(Oxidation (M))|F}E{M(Oxidation (M))|F};YY[QP]QYY[QP];YY[QP]Q[QP]YY;[{M(Oxidation (M))|F}E]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q[QP]T[QP];[{M(Oxidation (M))|F}E]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QYY[QP];[{M(Oxidation (M))|F}E][WP][TP]{M(Oxidation (M))|F}T[QP] 5.1332;4.3957;3.1309;2.3934;2.3534;2.1123;0.63312;0.35105;0.25098 -;-;-;-;-;-;-;-;- 72 NaN NaN 97658.1 NaN 6136 2360 8489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8500 43.996 NaN 757040 35 0 148620 0.327 -1 0 52 431.88105408673914 1292.6213328604174 3 431.881103515625 MULTI HCD FTMS 0 0 0 8499 228330.46875 0.8143403342589512 -6 0.17806625366210938 1 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.2212 0 0 980.5080367550413 0 980.5080367550413 0 7.742275032520141 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2212 - 12 NaN NaN 193084.4 NaN 6137 2361 8499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8501 44 NaN 219920 35 0 63709 0.261 + 13396 KYPDRVPVI 9 51 543.8189040817973 1085.6232552303945 2 543.8187255859375 MULTI HCD FTMS 0 0 0 8499 147647.28125 0.12378542744538622 13 -0.3792762756347656 2 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 27.223235318498237 0.1251536255799991 1 KYPDVVG 7 3 31.291 0 0 2.8823 0 0 0 324.19162927799067 324.19162927799067 14.837513372786475 0 0 0 0 1.1861818737241734 0 0 0 KYPDVVG 2.8823 - 60 + NaN NaN 117049 NaN 6138 2361 8499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8502 44.004 NaN 83614 35 0 21213 0.262 + 16572 LVDRVPTL 8 35 456.77917995887975 911.5438069845595 2 456.779052734375 MULTI HCD FTMS 0 0 0 8499 54614.9609375 0.5484019131699488 3 -0.08235549926757812 3 Unmodified _LVDRVPTL_ ENSG00000265203|ENST00000584701|RBP3;RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant 22.736283301280096 0.42650828432173493 1 T{I|L} 2 6 23.271 0 0 2.5529 0 0 679.4024068148746 0 679.4024068148746 0 12.786596949921218 0 0 0 0.3807196863200844 0 0 0 + T{I|L} 2.5529 + + 11 NaN NaN 96926.9 NaN 6139 2361 8499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8503 44.007 NaN 261870 35 0 44097 0.261 + 25694 SIPHSDLLD 9 37 498.7533824004088 995.4922118676176 2 498.75311279296875 MULTI HCD FTMS 0 0 0 8499 126541.3359375 0.7610725681896459 -2 0.06592559814453125 4 Unmodified _SIPHSDLLD_ ENSG00000130227|ENST00000252512|XPO7;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant 39.957323273324995 0.06554068735427583 1 E{I|L}D{I|L} 4 6 42.735 0 0 4.2929 0 0 507.24543959785314 0 507.24543959785314 0 9.517127498657274 0 0 0 1 0 0.3807196863200844 0 E{I|L}D{I|L} 4.2929 - 57 NaN NaN 130776.5 NaN 6140 2361 8499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8504 44.011 NaN 129760 35 0 15859 0.261 -1 FSSDHLIEM 9 39 547.7454725419369 1093.4763921506737 2 547.7353515625 MULTI HCD FTMS 0 0 0 8499 25966.984375 1 0 0 5 Oxidation (M) _FSSDHLIEM(Oxidation (M))_ ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B 20.453626601364224 0.18364154288633264 1 E{M(Oxidation (M))|F} 2 -1 33.711 0 0 3.083 0 0 799.3879044571175 0 799.3879044571175 0 7.028937514676485 0 0 0 0.9247425010840047 0 0.5 0 E{M(Oxidation (M))|F} 3.083 + + 19 + NaN NaN 125379.8 NaN 6141 2361 8499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8505 44.014 NaN 75786 35 0 14287 0.261 + 25283 SAVVHEYAL 9 33 494.75838848793177 987.5022240426636 2 495.25970458984375 MULTI HCD FTMS 0 0 0 8499 22559.673828125 0.03923340083374356 16 -0.45849609375 6 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 10.823927491677226 0.26684000660059787 1 A{I|L} 2 7 25.217 0 0 2.5536 0 0 785.3713408681979 0 785.3713408681979 0 16.264100213633768 0 0 0 0.4247425010840047 0 0 0 + A{I|L} 2.5536 + + 13 NaN NaN 99279.3 NaN 6142 2361 8499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8507 44.019 NaN 673670 35 0 108440 0.327 + 24661 RYLSPKYIKMF 11 69 487.93555575279356 1460.7848378585807 3 487.9353332519531 MULTI HCD FTMS 0 0 0 8506 225364.640625 0.7073470568762796 6 -0.17801666259765625 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 61.16457814134879 0.035572029071956085 1 [Y{I|L}]RS[KP]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 93.197 0 0 6.3799 6.3799 92.02 0 0 0 16.688941650345612 71.242209500285 16.688941650345612 23.661294935738255 0 2.6989700043360187 1.5228787452803376 2.1549471895720984 0 [Y{I|L}]RS[KP]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[TP][HT]V{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3799;4.7602 -;- 402 NaN NaN 187878.6 NaN 6143 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8508 44.023 NaN 232390 35 0 62940 0.261 + 10507 IPENNPVKL 9 45 512.295195449731 1022.5758379662619 2 512.2952270507812 MULTI HCD FTMS 0 0 0 8506 131929.25 0.9525401380209121 3 -0.08563232421875 2 Unmodified _IPENNPVKL_ ENSG00000158769|ENST00000368026|F11R;nc|ENSG00000158769|Q9Y624-2|F11R 40.23920728925047 0.06424668180817725 1 {I|L}PENN[VP]K{I|L} 9 0 + 60.657 0 0 5.9318 5.9318 87.844 0 0 0 46.19334362750273 9.594465368295886 9.594465368295886 9.208187539523749 0 1.6549471895720984 1.3979400086720375 0.3807196863200844 0 + + {I|L}PENN[VP]K{I|L};{I|L}PENGG[VP]K{I|L};{I|L}PEGGN[VP]K{I|L} 5.9318;5.0313;5.0313 +;-;- + 69 + NaN NaN 121114.8 NaN 6144 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8509 44.027 NaN 141120 35 0 19046 0.261 -1 LPDDPRQMTL 10 31 601.2976014254127 1200.5806499176254 2 601.2977294921875 MULTI HCD FTMS 0 0 0 8506 54586.4453125 0.3827772860636179 11 -0.326568603515625 3 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 18.373094154950223 0.33925629317698053 1 {I|L}PDD 4 -1 38.175 0 0 3.1797 0 0 0 757.367165112511 757.367165112511 5.49926291259105 0 0 0 0 0.9247425010840047 0 0 0 {I|L}PDD 3.1797 + + 64 + NaN NaN 96321.3 NaN 6145 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8510 44.03 NaN 82503 35 0 22763 0.263 + -1 APEPTHPC 8 30 454.7019955394626 NaN 0 454.7021179199219 PEAK HCD FTMS 0 0 0 8506 57389.3125 0.9679246087283471 1 -0.0330047607421875 4 Carbamidomethyl (C) _APEPTHPC(Carbamidomethyl (C))_ REV__ENST00000570827.6_1_17:9548246-9548537:+|nuORF 4.75600775471527 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.77031 0 0 310.12891709237107 447.1988924615844 757.3278095539555 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.77031 - 4 + NaN NaN 106798 NaN 6146 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8511 44.034 NaN 321090 35 0 32270 0.261 + 24423 RYLDASNEL 9 62 540.7698609415867 1079.5251689499732 2 540.7693481445312 MULTI HCD FTMS 0 0 0 8506 60983.57421875 0.7048059803292803 -1 0.023014068603515625 5 Unmodified _RYLDASNEL_ ENSG00000114904|ENST00000233027|NEK4;nc|ENSG00000114904|P51957-2|NEK4;nc|ENSG00000114904|P51957-3|NEK4 32.037481411007896 0.10189719824197178 1 {[MS]|[{M(Oxidation (M))|F}A]}NGEEVNA 9 9 53.903 0 0 4.9933 0 0 0 145.09742505457316 145.09742505457316 8.087965091599337 0 0 0 0 0 0 1.326348700266608 0.3807196863200844 {[MS]|[{M(Oxidation (M))|F}A]}NGEEVNA 4.9933 - 703 NaN NaN 142070.9 NaN 6147 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8512 44.037 NaN 142290 35 0 20547 0.261 + 17708 MAVIDGNVM 9 49 491.2222691242905 980.429985315381 2 491.22216796875 MULTI HCD FTMS 0 0 0 8506 80608.3203125 0.9359618803264824 -5 0.1417236328125 6 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 74.92900055777586 0.007493270374442853 1 {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F} 9 0 + 55.011 0 0 5.611 5.611 91.581 0 0 0 4.762036441594191 55.01145250420969 4.762036441594191 36.587811364524185 0 2.2396518287104437 0 0.3807196863200844 0.4247425010840047 + + {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}[TA]AV{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}[WR]{M(Oxidation (M))|F} 5.611;1.8791;1.705;1.0279 +;-;-;- + 81 NaN NaN 110351.5 NaN 6148 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8513 44.04 NaN 52241 35 0 6667 0.261 + 34533 YPIAEEKTQL 10 30 596.3166076869584 1190.6186624407167 2 596.31640625 MULTI HCD FTMS 0 0 0 8506 37634.625 0.8564082949024472 1 -0.0330047607421875 7 Unmodified _YPIAEEKTQL_ ENSG00000081985|ENST00000674203|IL12RB2;nc|ENSG00000081985|Q99665-3|IL12RB2 11.517880264261096 0.4033776509493788 1 YP{I|L}AE 5 5 37.959 0 0 3.1882 0 0 0 614.3151949518186 614.3151949518186 36.84955642535897 0 0 0 0 0 0 0 0 + YP{I|L}AE 3.1882 + + 12 + NaN NaN 97291.7 NaN 6149 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8514 44.044 NaN 303190 35 0 28432 0.261 + 4935 FANVEEHSF 9 70 540.2433463053799 1078.4721396775597 2 540.2427978515625 MULTI HCD FTMS 0 0 0 8506 82827.65625 0.6676063921060544 -1 0.023014068603515625 8 Unmodified _FANVEEHSF_ ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6;RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant 83.42873516780209 0.004742894019233849 1 {M(Oxidation (M))|F}ANVEEHS{M(Oxidation (M))|F} 9 0 + 82.273 0 0 7.6287 7.6287 89.484 0 0 0 9.36613021135608 7.887503096606139 7.887503096606139 7.887503096606139 0 2.159379381312206 0 1.7491348669726232 0.28872548999643577 + + {M(Oxidation (M))|F}ANVEEHS{M(Oxidation (M))|F};{M(Oxidation (M))|F}ANVEEG[WQ];{M(Oxidation (M))|F}AGGVEEHS{M(Oxidation (M))|F};{M(Oxidation (M))|F}AGGVEEG[WQ];{[MS]|[{M(Oxidation (M))|F}A]}NVEWNAE;{[MS]|[{M(Oxidation (M))|F}A]}NWEVNAE;{[MS]|[{M(Oxidation (M))|F}A]}NGEEV[WQ];{M(Oxidation (M))|F}ANGEEV[WQ];{[MS]|[{M(Oxidation (M))|F}A]}NVEWGGAE;{[MS]|[{M(Oxidation (M))|F}A]}GGVEWNAE 7.6287;6.8973;6.5071;6.0435;5.6959;5.3293;5.137;4.9542;4.842;4.6102 +;-;-;-;-;-;-;-;-;- + 871 + NaN NaN 129370.8 NaN 6150 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8515 44.047 NaN 139800 35 0 48431 0.261 -1 MHCDGGISMIL 11 30 617.7667767595063 1233.5190005858126 2 617.7665405273438 MULTI HCD FTMS 0 0 0 8506 73976.8359375 0.9646611758574185 -3 0.08893966674804688 9 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 8.745405648335112 0.3805662881914433 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 40.745 0 0 3.3032 0 0 713.2619496076187 0 713.2619496076187 0 36.76599703664159 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.3032 - 10 NaN NaN 114711.4 NaN 6151 2362 8506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8517 44.052 NaN 388080 35 0 33332 0.327 -1 KMPKFKMPSF 10 59 419.55550269268406 1255.6446786782521 3 419.5556640625 MULTI HCD FTMS 0 0 0 8516 202666.84375 0.8128750929477528 1 -0.026336669921875 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 21.799462835604743 0.30720719660089946 1 S{M(Oxidation (M))|F} 2 -1 22.206 0 0 1.7685 0 0 1003.5344472102819 0 1003.5344472102819 0 0.44022814763920337 0 0 0 0.4247425010840047 0 0 0 S{M(Oxidation (M))|F} 1.7685 + + 30 + NaN NaN 138807.4 NaN 6152 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8518 44.056 NaN 373400 35 0 27029 0.261 + 30532 VMSQALKATF 10 79 556.2940757611307 1110.5735985890612 2 556.2933959960938 MULTI HCD FTMS 0 0 0 8516 191887.40625 0.5522468157025097 -5 0.15169906616210938 2 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 112.04118876639723 4.866328273697036E-05 1 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 89.911 0 0 8.0959 8.0959 93.149 0 0 0 5.764837301042718 61.317117558728626 5.764837301042718 12.219161359540152 0 3.360924374808178 0 1.3684151806525389 0.3054621874040891 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};[TA]K[EC]{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}[TA]K{M(Oxidation (M))|F};[TA]K[EC]{I|L}[TA]K{M(Oxidation (M))|F} 8.0959;6.9956;6.4518;5.7869;4.6866;4.1428 +;-;-;-;-;- + 1445 NaN NaN 142030.8 NaN 6153 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8519 44.06 NaN 343330 35 0 36806 0.261 + 28740 TTAENEFVM 9 63 529.2290398088994 1056.4435266845987 2 529.2286987304688 MULTI HCD FTMS 0 0 0 8516 117603.375 0.6171593821006777 -3 0.08896255493164062 3 Oxidation (M) _TTAENEFVM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant 78.7280429016045 0.006263961847259105 1 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 6 39.583 0 0 3.7468 0 0 411.1826394552634 0 411.1826394552634 0 18.614079997524783 0 0 0 0.5 0 0.9634679910804405 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.7468 - 231 NaN NaN 137129.8 NaN 6154 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8520 44.063 NaN 368650 35 0 25295 0.261 + 10016 IETLAEKFR 9 83 553.8131789121136 1105.611804891027 2 553.8319091796875 MULTI HCD FTMS 0 0 0 8516 13193.5849609375 0.3363725438252817 -5 0.15169906616210938 4 Unmodified _IETLAEKFR_ ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196|AFDN 34.10243960390752 0.09241788333544565 1 MET{I|L}AK{[TV]|[{I|L}S]}[{I|L}T] 10 6 + 58.703 0 0 5.3095 5.3095 82.265 0 0 0 15.026975159433533 3.7781651197567285 3.7781651197567285 0.796896906561031 0 0 0 1.6307196863200843 0 MET{I|L}AK{[TV]|[{I|L}S]}[{I|L}T];MTE{I|L}AK{[TV]|[{I|L}S]}[{I|L}T];ME{I|L}TAK{[TV]|[{I|L}S]}[{I|L}T];{[QN]|[E{I|L}]|[KN]}T{I|L}AKST{I|L}M;{[QN]|[E{I|L}]|[KN]}T{I|L}[KS]AT{I|L}M;[{I|L}T]E{I|L}AKST{I|L}M;[YR]{I|L}KA{I|L}E[DV];{[QN]|[E{I|L}]|[KN]}T{I|L}A{[MS]|[{M(Oxidation (M))|F}A]}K[DV];[{I|L}T]E{I|L}[KS]AT{I|L}M;MTS{I|L}[Q{I|L}]{[TV]|[{I|L}S]}[{I|L}T] 5.3095;5.2375;5.0217;4.9678;3.9596;3.6242;3.4324;2.849;2.616;2.3878 -;-;-;-;-;-;-;-;-;- 973 + NaN NaN 141994.2 NaN 6155 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8521 44.066 NaN 103240 35 0 32650 0.263 + -1 GVEMRKWAYF 10 35 434.88204968672255 NaN 0 434.8820495605469 PEAK HCD FTMS 0 0 0 8516 67410.1328125 0.6703071800151207 138 -3.546588897705078 5 Oxidation (M) _GVEM(Oxidation (M))RKWAYF_ REV__ENSG00000130427|ENST00000252723|EPO 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105878.4 NaN 6156 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8522 44.07 NaN 163340 35 0 19044 0.261 + 34413 YPESESIMM 9 52 559.7224920098566 1117.4304310865132 2 559.7225341796875 MULTI HCD FTMS 0 0 0 8516 47876.20703125 0.3378539920952539 12 -0.3496513366699219 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 54.773552608820026 0.024892918755467567 1 ES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 57.423 0 0 5.1388 0 0 476.1883717267594 0 476.1883717267594 0 39.42975302910913 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + ES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1388 + + 139 NaN NaN 106066.3 NaN 6157 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8523 44.073 NaN 97568 35 0 14072 0.261 + 14066 KYVSGEFRF 9 33 566.7929505973174 1131.5713482614347 2 566.7925415039062 MULTI HCD FTMS 0 0 0 8516 61087.15625 0.9014227069371734 -1 0.0330047607421875 7 Unmodified _KYVSGEFRF_ ENSG00000124784|ENST00000379834|RIOK1 20.580933911654288 0.18254163597178805 1 KYVS{[DA]|[EG]}{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 51.176 0 0 4.5226 4.5226 90.31 0 0 0 33.21719669609443 0.7821840590102624 0.7821840590102624 51.17599686953518 0 1.2302046884880937 0 0 0 + + KYVS{[DA]|[EG]}{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 4.5226 + + 47 + NaN NaN 101863.1 NaN 6158 2363 8516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8525 44.078 NaN 1781100 35 0 290690 0.327 -1 NQVKIQMDQF 10 84 422.87649346539007 1265.6076509963702 3 422.8764953613281 MULTI HCD FTMS 0 0 0 8524 805757.8125 0.8603224749926994 1 -0.0262908935546875 1 Oxidation (M) _NQVKIQM(Oxidation (M))DQF_ ENSG00000058085|ENST00000264144|LAMC2;nc|ENSG00000058085|Q13753-2|LAMC2 18.721224879955976 0.3359999958351898 1 NY[WR]PQQQ 8 -1 35.645 0 0 2.8164 0 0 0 162.05605493717033 162.05605493717033 7.496681312452793 0 0 0 0 1.5 1.6989700043360187 0 0.7614393726401688 NY[WR]PQQQ 2.8164 - 290 + NaN NaN 362503.4 NaN 6159 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8526 44.083 NaN 974610 35 0 110130 0.261 + 896 AYAPPPHVI 9 57 482.76605122423734 963.5175495152747 2 483.25042724609375 MULTI HCD FTMS 0 0 0 8524 128866.515625 0.9506412063702687 -2 0.0593414306640625 2 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 28.173230860318316 0.11963627304438548 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AKKP{[WT]|[RM]} 8 5 + 49.71 0 0 5.1592 5.1592 61.86 0 0 0 18.348396689760094 1.5224967362874509 1.5224967362874509 0 0 1 1.6989700043360187 0.3054621874040891 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AKKP{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}APKK{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AKKAA{[QN]|[E{I|L}]|[KN]};{[SA]|[TG]}{M(Oxidation (M))|F}KKP{[WT]|[RM]};{[SA]|[TG]}{M(Oxidation (M))|F}PKK{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V][HK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[SA]|[TG]}{M(Oxidation (M))|F}KKAA{[QN]|[E{I|L}]|[KN]} 5.1592;5.1592;4.092;1.8345;1.8345;0.84416;0.76733 -;-;-;-;-;-;- 204 + NaN NaN 237387.8 NaN 6160 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8527 44.086 NaN 1057200 35 0 305330 0.261 + -1 LRMIRRTER 9 77 416.2435305890866 1245.70876236746 3 416.2436828613281 MULTI HCD FTMS 0 0 0 8524 415783.9375 0.7547873232402195 9 -0.2672271728515625 3 Oxidation (M) _LRM(Oxidation (M))IRRTER_ REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF 8.97624648632007 0.2828035605319045 1 RY[WK]W 5 -1 36.339 0 0 2.9171 0 0 0 423.2465498147247 423.2465498147247 12.398419989938503 0 0 0 0 0.6747425010840047 0.958607314841775 0 0.3807196863200844 RY[WK]W 2.9171 - 149 + NaN NaN 242241.5 NaN 6161 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8528 44.089 NaN 341290 35 0 20017 0.261 + 20162 NYKKFYEQF 9 76 633.8114714375128 1265.6083899418254 2 633.8112182617188 MULTI HCD FTMS 0 0 0 8524 304829.71875 0.8448423830900413 1 -0.0262908935546875 4 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 135.71846124360977 0.0002581714079839297 1 NYKK{M(Oxidation (M))|F}YEQ{M(Oxidation (M))|F} 9 0 + 110.05 0 0 8.6951 8.6951 96.079 0 0 0 78.37327842948042 11.879617791072832 11.879617791072832 24.719712763997563 0 2.1549471895720984 2 1.0114393726401687 1.1549471895720984 + + NYKK{M(Oxidation (M))|F}YEQ{M(Oxidation (M))|F};NYKK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}QE;[YE]Q{M(Oxidation (M))|F}KK[YN]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]QYKK[YN]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EYKK[YN]{M(Oxidation (M))|F};[RH]E{[QV]|[N{I|L}]|[RA]|[KV]}[WH]Q{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[Y{M(Oxidation (M))|F}][HV]PEQ{M(Oxidation (M))|F};[YE]QV[HV][TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EHH{I|L}Y[RH] 8.6951;6.7419;1.7572;1.5194;1.3802;0.88189;0.34779;0.31056;0.038896 +;-;-;-;-;-;-;-;- + 1383 + NaN NaN 151487.1 NaN 6162 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8529 44.093 NaN 117830 35 0 11069 0.261 -1 VYCLPFSQL 9 46 563.7811368498672 NaN 0 563.7938232421875 PEAK HCD FTMS 0 0 0 8524 12953.150390625 0.7041565220511937 -2 0.0593414306640625 5 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))LPFSQL_ ENST00000563259.5_1_16:71841975-71842083:-|nuORF 11.640296217721598 0.23883959125015683 1 M{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.7071 0 0 131.06616666672795 713.3844088190061 844.4505754857341 0 0 0 0 0 0 0 0 0 M{M(Oxidation (M))|F} 0.7071 - 33 + NaN NaN 121111.5 NaN 6163 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8530 44.096 NaN 184120 35 0 43746 0.261 -1 RYKLYQEMF 9 35 647.3183876650669 1292.6222223969337 2 647.81982421875 MULTI HCD FTMS 0 0 0 8524 36190.7421875 0.5221696504808953 -1 0.026336669921875 6 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 36.506200033944 0.08138327636155518 1 [YR]K{I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 68.594 0 0 5.3066 5.3066 86.77 0 0 0 5.6424927368725974 63.10911268361153 5.6424927368725974 9.208187539523749 0 1.3494850021680094 0 0.3494850021680094 0 [YR]K{I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]K{I|L}Y[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]K{I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E;[YR]K{I|L}Y[AG]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 5.3066;4.5942;3.6646;2.9522 +;-;-;- + 99 NaN NaN 109015.6 NaN 6164 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8531 44.099 NaN 205120 35 0 45789 0.261 -1 HPFFKDMSL 9 30 569.2734612342365 1136.532369535273 2 569.2734375 MULTI HCD FTMS 0 0 0 8524 74637.5625 0.17533087030518293 -17 0.4745826721191406 7 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 12.240655878213236 0.2545997876781172 1 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3280169313817 752.3280169313817 27.460762528683702 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 12 + NaN NaN 108073.2 NaN 6165 2364 8524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8533 44.104 NaN 837140 35 0 144770 0.327 + 28549 TPSVHEPVL 9 79 489.7663107542688 977.5180685753376 2 489.7661437988281 MULTI HCD FTMS 0 0 0 8532 440848.8125 0.6684066424273529 -2 0.0526275634765625 1 Unmodified _TPSVHEPVL_ ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF 100.37149154755038 0.004254194004462789 1 [VP][HS]TEPV{I|L} 9 3 + 65.269 0 0 6.677 6.677 87.51 0 0 0 7.11304830785128 7.11304830785128 7.11304830785128 7.11304830785128 0 1.305462187404089 1.5228787452803376 1.6307196863200843 0 [VP][HS]TEPV{I|L};TP[VS]HEPV{I|L};[VS]HPTEPV{I|L};[VP][HS]ETPV{I|L};[VP][HS]TEVP{I|L};[TP][PA]HE{I|L}T{I|L};[DV][HT]PTPV{I|L};[VS]HEPTPV{I|L};[VS]HPETPV{I|L};[VS]HPTEVP{I|L} 6.677;5.9494;5.4975;5.4681;5.1947;4.903;4.6857;4.3778;4.2886;4.0152 -;+;-;-;-;-;-;-;-;- + 543 NaN NaN 214849.3 NaN 6166 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8534 44.109 NaN 508680 35 0 67545 0.261 + -1 MPEVKVETI 9 83 531.2810358406833 1060.5475187481666 2 531.28076171875 MULTI HCD FTMS 0 0 0 8532 108770.421875 0.6416942968973177 -2 0.0526275634765625 2 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 24.990960013464015 0.14443998892849796 1 ET{I|L} 3 -1 31.044 0 0 2.9272 0 0 699.3817005841812 0 699.3817005841812 0 3.8452090666831396 0 0 0 0.5 0 0.6747425010840047 0 ET{I|L} 2.9272 + + 128 NaN NaN 181823.6 NaN 6167 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8535 44.113 NaN 351340 35 0 22397 0.261 + 19002 NATNVEQSF 9 69 505.23255274684044 1008.4505525604809 2 505.2326354980469 MULTI HCD FTMS 0 0 0 8532 116621.5234375 0.8035081431906252 -2 0.0526275634765625 3 Unmodified _NATNVEQSF_ ENSG00000138069|ENST00000409784|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;nc|ENSG00000138069|P62820-3|RAB1A 93.93812099017352 0.0044227730261779084 1 {[QG]|[NA]}TNVEQS{M(Oxidation (M))|F} 9 0 + 73.427 0 0 7.2811 7.2811 87.504 0 0 0 8.918271902055324 49.3740810491245 8.918271902055324 4.463950151760656 0 2.0994850021680094 0 0.6307196863200843 1.531234684152075 + + {[QG]|[NA]}TNVEQS{M(Oxidation (M))|F};{[QG]|[NA]}TVNEQS{M(Oxidation (M))|F};{[QG]|[NA]}TGGVEQS{M(Oxidation (M))|F};{[QG]|[NA]}TNVE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TVNE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TVGGEQS{M(Oxidation (M))|F};{[QG]|[NA]}TVENQS{M(Oxidation (M))|F};{[QG]|[NA]}TGGVE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TVGGE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TVEN[AG]S{M(Oxidation (M))|F} 7.2811;6.8385;6.368;6.368;5.9254;5.9254;5.4762;5.4592;5.0166;4.5631 +;-;-;-;-;-;-;-;-;- + 589 NaN NaN 133812.8 NaN 6168 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8536 44.116 NaN 169630 35 0 19877 0.261 + 8177 GPSEVEQQL 9 45 493.7428806072229 985.4712082812458 2 493.74261474609375 MULTI HCD FTMS 0 0 0 8532 73696.515625 0.7887906096567031 -1 0.0262908935546875 4 Unmodified _GPSEVEQQL_ ENSG00000167110|ENST00000611957|GOLGA2;ENST00000570077.1_1_15:62538426-62538813:-|nuORF;nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2 66.45667989310934 0.010234776021261575 1 VEQQ{I|L} 5 4 58.756 0 0 5.9622 0 0 370.14818007636876 0 370.14818007636876 0 29.10219694675405 0 0 0 1.8494850021680094 0 0.3807196863200844 0 + VEQQ{I|L} 5.9622 + + 174 NaN NaN 119775.7 NaN 6169 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8537 44.119 NaN 122890 35 0 13819 0.261 -1 MESGVLVAM 9 38 476.727641283541 951.440729633882 2 476.72760009765625 MULTI HCD FTMS 0 0 0 8532 45433.21875 1 0 0 5 Oxidation (M) _MESGVLVAM(Oxidation (M))_ ENSG00000183313|ENST00000332249|OR52L1;nc|ENSG00000262980|Q8NGH6|OR52L2P 21.74664581756881 0.17247014374749275 1 {I|L}VA{M(Oxidation (M))|F} 4 -1 43.047 0 0 4.5244 0 0 503.20457656074376 0 503.20457656074376 0 43.047444008242906 0 0 0 1.5 0 0 0 {I|L}VA{M(Oxidation (M))|F} 4.5244 + + 67 NaN NaN 101502.5 NaN 6170 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8538 44.122 NaN 62365 35 0 16376 0.261 -1 RADQFEYVM 9 20 587.7633580190948 1173.5121631049894 2 587.7631225585938 MULTI HCD FTMS 0 0 0 8532 27909.515625 0.06367665938142619 -17 0.4712486267089844 6 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 12.240655878213236 0.2545997876781172 1 EYV{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.5737 0 0 617.2886219709 0 617.2886219709 0 41.938200260161125 0 0 0 1 0 0 0 EYV{M(Oxidation (M))|F} 3.5737 + + 26 NaN NaN 94144.8 NaN 6171 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8539 44.126 NaN 56673 35 0 18215 0.261 + 24169 RYFDPANGKF 10 21 607.801264180245 1213.5879754272898 2 607.801513671875 MULTI HCD FTMS 0 0 0 8532 24804.126953125 0.03939658907418926 28 -0.7909431457519531 7 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 4.5288652416199255 0.4513317009562028 1 M 1 10 11.99 0 0 0.98795 0 0 632.3289424660105 447.19977747135005 1079.5287199373606 0 0 0 0 0 0.5 0 0 0 M 0.98795 - 5 + NaN NaN 95798 NaN 6172 2365 8532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8541 44.131 NaN 577060 35 0 120780 0.327 + 15995 LPQSKETLL 9 74 514.8029958939343 1027.5914388546685 2 514.8027954101562 MULTI HCD FTMS 0 0 0 8540 298877.40625 0.8099223839099425 3 -0.09913253784179688 1 Unmodified _LPQSKETLL_ ENSG00000148297|ENST00000343730|MED22;ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22 100.0907132914201 0.004261551473353346 1 {I|L}PQSKET{I|L}{I|L} 9 0 + 89.14 0 0 8.6746 8.6746 92.504 0 0 0 43.68485229903072 7.865612383257385 7.865612383257385 9.208187539523749 0 2.322682509756042 1.6989700043360187 1.3851518780601924 0.6989700043360187 + + {I|L}PQSKET{I|L}{I|L};{I|L}P[AG]SKET{I|L}{I|L};[{I|L}P]QSKET{I|L}{I|L};[{I|L}P][AG]SKET{I|L}{I|L};[{I|L}P]QT[{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[QP]{I|L}SKET{I|L}{I|L};[{I|L}T]EKSQP{I|L}{I|L};[{I|L}T]EKSQ{I|L}P{I|L};{I|L}VQEK{[DA]|[EG]}{I|L}{I|L};[{I|L}T]EKS{I|L}QP{I|L} 8.6746;7.7785;6.6855;5.7894;4.0597;3.9597;3.6997;3.4534;3.2943;3.0709 +;-;+;-;-;-;-;-;-;- + 924 + NaN NaN 181157 NaN 6173 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8542 44.135 NaN 805950 35 0 165370 0.261 -1 0 70 431.88105408673914 1292.6213328604174 3 431.881103515625 MULTI HCD FTMS 0 0 0 8540 273062.75 0.9738779599849984 -1 0.026348114013671875 2 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 28.856 0 0 2.2324 0 0 980.5063361814736 0 980.5063361814736 0 6.677105005197657 0 0 0 0.7887254899964358 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2324 - 30 NaN NaN 215330.7 NaN 6174 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8543 44.139 NaN 632430 35 0 90778 0.261 -1 IPLMIMVIT 9 67 531.8007008002107 1061.5868486672214 2 531.8004760742188 MULTI HCD FTMS 0 0 0 8540 118640.0703125 0.9598806445477596 2 -0.06603622436523438 3 2 Oxidation (M) _IPLM(Oxidation (M))IM(Oxidation (M))VIT_ HTR2C|p.T228M|1|0.3|ENSG00000147246|chrX:114906721-114906721|C/T|missense_variant 16.942295170755138 0.21397866736869717 1 {I|L}PP 3 -1 33.174 0 0 3.125 0 0 0 751.3759859674436 751.3759859674436 20.215299873086607 0 0 0 0 0.3252574989159953 1.3010299956639813 0 0 {I|L}PP 3.125 - 164 + NaN NaN 184367.2 NaN 6175 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8544 44.142 NaN 341860 35 0 24361 0.261 + 19003 NATNVEQSF 9 68 505.23255274684044 1008.4505525604809 2 505.23260498046875 MULTI HCD FTMS 0 0 0 8540 133283.0625 0.9183041252717734 -1 0.026348114013671875 4 Unmodified _NATNVEQSF_ ENSG00000138069|ENST00000409784|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;nc|ENSG00000138069|P62820-3|RAB1A 107.5634045930896 0.0033401844687379516 1 {[QG]|[NA]}TNVEQS{M(Oxidation (M))|F} 9 0 + 74.478 0 0 7.3854 7.3854 87.775 0 0 0 4.71315485343699 16.478174818886373 4.71315485343699 4.71315485343699 0 2.4049471895720984 0 1.0189301784845295 1.2614393726401687 + + {[QG]|[NA]}TNVEQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KNEQS{M(Oxidation (M))|F};{[QG]|[NA]}TVNEQS{M(Oxidation (M))|F};{[QG]|[NA]}TNVE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TGGVEQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KGGEQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KNE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TVNE[AG]S{M(Oxidation (M))|F};{[QG]|[NA]}TVGGEQS{M(Oxidation (M))|F};{[QG]|[NA]}TGGVE[AG]S{M(Oxidation (M))|F} 7.3854;6.918;6.8023;6.4723;6.4723;5.9995;5.9995;5.8892;5.8892;5.5635 +;-;-;-;-;-;-;-;-;- + 636 NaN NaN 130989.7 NaN 6176 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8545 44.146 NaN 229950 35 0 8695.6 0.261 + 20355 NYSRNFSSF 9 80 561.2553115946108 1120.4960702560215 2 561.253662109375 MULTI HCD FTMS 0 0 0 8540 64049.44921875 1 0 0 5 Unmodified _NYSRNFSSF_ ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant 45.69961567697781 0.039180348357221985 1 [YN]GH[NP]VSS{M(Oxidation (M))|F} 10 4 + 53.323 0 0 4.7589 4.7589 84.786 0 0 0 35.162449791510895 10.080432418049313 10.080432418049313 8.59955700240966 0 1.4489700043360187 1.3979400086720375 0.2614393726401688 0.23965182871044374 [YN]GH[NP]VSS{M(Oxidation (M))|F};[YN]GH[TA][QP]S{M(Oxidation (M))|F};[YN]GH[C(Carbamidomethyl (C))R]{I|L}{[DS]|[MA]|[CV]|TT};[YN]GH[C(Carbamidomethyl (C))R]V{[ES]|[DT]|[{I|L}C]};[YN]GH[NP][SG][Y{I|L}];{[QD]|[EN]|[WG]|[KD]|[RS]}NNY{M(Oxidation (M))|F}SS{M(Oxidation (M))|F};[YG]{I|L}[C(Carbamidomethyl (C))R]HV{[C(Carbamidomethyl (C))G]|[NC]};[YG]{I|L}[SG][TA]HG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[QT]QHC(Carbamidomethyl (C)){I|L}TS{M(Oxidation (M))|F};[YN]{[TV]|[{I|L}S]}[TA]HG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.7589;3.9914;2.8532;2.5389;2.4275;2.0746;2.0372;1.9786;1.7187;1.7114 -;-;-;-;-;-;-;-;-;- 1317 + NaN NaN 136626.7 NaN 6177 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8546 44.149 NaN 63392 35 0 17459 0.261 + -1 MHLHTMMAQL 10 28 630.7803603491806 1259.546167765161 2 630.7808227539062 MULTI HCD FTMS 0 0 0 8540 37444.16015625 0.6725261120543246 11 -0.3235015869140625 6 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 5.731851221503515 0.44496410492002586 1 YAQ{I|L} 4 -1 36.186 0 0 2.8729 0 0 766.2906361310562 0 766.2906361310562 0 31.581531501239297 0 0 0 0 0 0 0.4247425010840047 YAQ{I|L} 2.8729 - 10 NaN NaN 96855.9 NaN 6178 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8547 44.152 NaN 64359 35 0 9318.6 0.261 + 24535 RYLEQLHQL 9 26 600.3302654614056 1198.645977989611 2 600.8317260742188 MULTI HCD FTMS 0 0 0 8540 16600.74609375 0.027911056159018618 33 -0.9393272399902344 7 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 7.101721422024254 0.29718071671418667 1 Q{I|L}HQ{I|L} 5 4 34.949 0 0 2.9157 0 0 561.2921620099625 0 561.2921620099625 0 30.969100130080562 0 0 0 0 0 0 0 + Q{I|L}HQ{I|L} 2.9157 + + 21 NaN NaN 88174.1 NaN 6179 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8548 44.155 NaN 85324 35 0 11850 0.262 -1 MPEDGQVNI 9 37 509.7293390532708 1017.4441251733416 2 509.7285461425781 MULTI HCD FTMS 0 0 0 8540 46561.53125 1 0 0 8 Oxidation (M) _M(Oxidation (M))PEDGQVNI_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 8.155526934196011 0.2891920862272901 1 VN{I|L} 3 -1 35.005 0 0 3.4405 0 0 673.2357491581142 0 673.2357491581142 0 33.01538440272459 0 0 0 0.8807196863200843 0 0 0 VN{I|L} 3.4405 + + 12 NaN NaN 107874.6 NaN 6180 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8549 44.159 NaN 117720 35 0 28250 0.261 + 17443 LYSELQARETF 11 37 452.89770937666765 1355.671298730203 3 453.2320556640625 MULTI HCD FTMS 0 0 0 8540 23425.921875 0.7744498430189132 1 -0.036327362060546875 9 Unmodified _LYSELQARETF_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 6.234356020891411 0.3915788988406848 1 T{M(Oxidation (M))|F} 2 9 35.217 0 0 2.5977 0 0 1089.5412260600467 0 1089.5412260600467 0 27.25772496747986 0 0 0 1 0 0.4247425010840047 0 + T{M(Oxidation (M))|F} 2.5977 + + 11 NaN NaN 98172.4 NaN 6181 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8550 44.162 NaN 127020 35 0 12004 0.261 + 28352 TPDGTEKGDFL 11 49 590.2801333540709 1178.5457137749418 2 590.279296875 MULTI HCD FTMS 0 0 0 8540 58907.90625 0.36576610856079156 -5 0.1349945068359375 10 Unmodified _TPDGTEKGDFL_ ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF 55.24861242081279 0.05986536799177808 1 TPDGT 5 6 42.691 0 0 3.6223 0 0 0 704.3259981744749 704.3259981744749 10.69090631379133 0 0 0 0 0.4247425010840047 0 0.6505149978319906 0 + TPDGT 3.6223 + + 83 + NaN NaN 105226.1 NaN 6182 2366 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8552 44.167 NaN 605150 35 0 55451 0.327 + 4859 FADQEVRSL 9 84 532.7719851829839 1063.5294174327678 2 532.772216796875 MULTI HCD FTMS 0 0 0 8551 254091.65625 0.9996829782560706 -1 0.036327362060546875 1 Unmodified _FADQEVRSL_ ENSG00000011405|ENST00000691414|PIK3C2A 121.50329630698991 0.001120265034723027 1 {M(Oxidation (M))|F}ADQEVRS{I|L} 9 0 + 79.025 0 0 7.4305 7.4305 86.899 0 0 0 2.628129502760231 2.628129502760231 2.628129502760231 2.628129502760231 0 2.6237125054200234 0 0.5554621874040891 0.6421590589602533 + + {M(Oxidation (M))|F}ADQEVRS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DQEVRS{I|L};{M(Oxidation (M))|F}AD[AG]EVRS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}D[AG]EVRS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DQ{[TV]|[{I|L}S]}[RD]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DQ{[TV]|[{I|L}S]}[RV]E;{[MS]|[{M(Oxidation (M))|F}A]}DQ{[TV]|[{I|L}S]}AAKN;{[QD]|[EN]|[WG]|[KD]|[RS]}KK[KC]WE 7.4305;7.1834;6.5647;5.6724;1.7025;1.3943;1.3302;0.63044 +;+;-;-;-;-;-;- + 482 + NaN NaN 171112.2 NaN 6183 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8553 44.172 NaN 147810 35 0 26094 0.261 + 25695 SIPHSDLLD 9 25 498.7533824004088 995.4922118676176 2 498.7532958984375 MULTI HCD FTMS 0 0 0 8551 107879.3203125 0.6488313937616382 4 -0.1155548095703125 2 Unmodified _SIPHSDLLD_ ENSG00000130227|ENST00000252512|XPO7;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant 26.88365393820708 0.12808753336095696 1 {I|L}D{I|L} 3 6 36.198 0 0 3.6362 0 0 636.2870153366395 0 636.2870153366395 0 10.255762612236907 0 0 0 1 0 0 0 {I|L}D{I|L} 3.6362 - 17 NaN NaN 108843.7 NaN 6184 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8554 44.175 NaN 129700 35 0 33897 0.261 + 13397 KYPDRVPVI 9 42 543.8189040817973 1085.6232552303945 2 543.8186645507812 MULTI HCD FTMS 0 0 0 8551 86299.40625 0.07235222213710274 19 -0.53717041015625 3 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 23.789781309258295 0.1548179064208189 1 [YK][YK]D{I|L} 6 6 23.345 0 0 2.1504 0 0 0 272.18768329119456 272.18768329119456 6.891427807092043 0 0 0 0 0.5 0 0.4247425010840047 0.3807196863200844 [YK][YK]D{I|L} 2.1504 - 30 NaN NaN 105361.3 NaN 6185 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8555 44.178 NaN 82176 35 0 26309 0.261 + 13026 KYITKSFNF 9 29 574.3107302645179 1146.6069075958358 2 574.3104248046875 MULTI HCD FTMS 0 0 0 8551 40514.0390625 1 0 0 4 Unmodified _KYITKSFNF_ ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF;nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 4.897010918128616 0.31389406404703984 1 KY{I|L} 3 6 26.198 0 0 2.2848 0 0 0 739.3418062799436 739.3418062799436 20.713337517843655 0 0 0 0 0 0 0 0 + KY{I|L} 2.2848 + + 6 + NaN NaN 96337 NaN 6186 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8556 44.182 NaN 83897 35 0 8125.7 0.261 + 23955 RVFPEKGYSF 10 44 615.3197446688151 1228.6249364044302 2 615.3194580078125 MULTI HCD FTMS 0 0 0 8551 40114.45703125 0.9238028472336294 -2 0.06267547607421875 5 Unmodified _RVFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 9.5439744041441 0.42184090036563754 1 C(Carbamidomethyl (C))[YG]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5 6 8.4679 0 0 0.68922 0 0 596.3869496076187 0 596.3869496076187 0 1.4781748188863713 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C))[YG]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 0.68922 - 10 NaN NaN 96235.2 NaN 6187 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8557 44.185 NaN 58284 35 0 7684.6 0.264 + 25363 SECGYVEM 8 36 459.17201540341676 NaN 0 459.1719970703125 PEAK HCD FTMS 0 0 0 8551 22127.9765625 0.7970906726975124 1 -0.0297088623046875 6 Unmodified _SECGYVEM_ ENSG00000145794|ENST00000503335|MEGF10;ENST00000515622.1_1_5:126783361-126801299:+|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92536.6 NaN 6188 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8558 44.188 NaN 34754 35 0 5582.2 0.261 + 35378 YYDKHFTEF 9 23 625.2802824830464 1248.5460120328928 2 625.2803955078125 MULTI HCD FTMS 0 0 0 8551 15085.8310546875 0.22018286994831537 5 -0.14857864379882812 7 Unmodified _YYDKHFTEF_ ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A 8.155526934196011 0.2891920862272901 1 TE{M(Oxidation (M))|F} 3 6 23.188 0 0 1.8572 0 0 853.3736439435562 0 853.3736439435562 0 16.197887582883936 0 0 0 0 0 0 0 + TE{M(Oxidation (M))|F} 1.8572 + + 5 NaN NaN 104400.9 NaN 6189 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8559 44.192 NaN 59931 35 0 6967.4 0.262 + 27966 TFDASRTTF 9 38 523.2510800867428 1044.4876072402856 2 523.2516479492188 MULTI HCD FTMS 0 0 0 8551 20552.541015625 0.16924097755203096 13 -0.3803672790527344 8 Unmodified _TFDASRTTF_ ENSG00000133961|ENST00000555238|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-8|NUMB 18.373094154950223 0.20161688160436167 1 AD{[ET]|[MV]} 4 7 28.94 0 0 2.7708 0 0 610.3032093732437 0 610.3032093732437 0 7.971062485323515 0 0 0 0.8494850021680094 0 0.4247425010840047 0 AD{[ET]|[MV]} 2.7708 - 14 NaN NaN 97693.4 NaN 6190 2367 8551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8561 44.197 NaN 593800 35 0 47280 0.327 + 30533 VMSQALKATF 10 86 556.2940757611307 1110.5735985890612 2 556.294189453125 MULTI HCD FTMS 0 0 0 8560 347466.75 1 0 0 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 168.90229379071172 4.458989702618133E-11 1 V{M(Oxidation (M))|F}SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 112.11 0 0 10.095 10.095 91.581 0 0 0 85.91042248108351 12.910992304973306 12.910992304973306 5.641005025610681 0 3.6237125054200234 0 1.7530834337684313 0.3494850021680094 + + V{M(Oxidation (M))|F}SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};V{M(Oxidation (M))|F}S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};V{M(Oxidation (M))|F}SQAK{I|L}AT{M(Oxidation (M))|F};V{M(Oxidation (M))|F}S[AG]AK{I|L}AT{M(Oxidation (M))|F};[TA][CS]VA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F};[TA]K[EC]{I|L}KAT{M(Oxidation (M))|F};[TA]KV[MD]KAT{M(Oxidation (M))|F} 10.095;9.5867;9.2694;8.7615;8.7595;7.9343;6.9617;6.7545;6.4409;5.977 +;+;-;-;-;-;-;-;-;- + 2474 + NaN NaN 175254 NaN 6191 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8562 44.201 NaN 468400 35 0 85745 0.261 + 897 AYAPPPHVI 9 40 482.76605122423734 963.5175495152747 2 482.76605224609375 MULTI HCD FTMS 0 0 0 8560 180115.390625 0.7045698572625939 3 -0.085845947265625 2 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 36.466142684027034 0.08156716203802528 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4 5 46.995 0 0 4.8774 0 0 0 558.3051695712699 558.3051695712699 27.329022044314467 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4.8774 + + 125 + NaN NaN 149272.6 NaN 6192 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8563 44.205 NaN 210480 35 0 52618 0.261 -1 SSGPVDPMM 9 39 468.693569896085 935.3725868589701 2 468.6933288574219 MULTI HCD FTMS 0 0 0 8560 72578.78125 0.5380105349502151 -7 0.20103073120117188 3 Oxidation (M) _SSGPVDPMM(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 D{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 4 -1 25.322 0 0 2.7072 0 0 427.2063921931775 0 427.2063921931775 0 22.22332374560656 0 0 0 0.9247425010840047 0 0.28872548999643577 0 D{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 2.7072 + + 5 NaN NaN 120304.6 NaN 6193 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8564 44.208 NaN 141490 35 0 13222 0.261 + 4936 FANVEEHSF 9 53 540.2433463053799 1078.4721396775597 2 540.2431640625 MULTI HCD FTMS 0 0 0 8560 66254.8828125 0.5340267402998327 5 -0.14855194091796875 4 Unmodified _FANVEEHSF_ ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6;RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant 55.50274090549119 0.023872834264864425 1 {M(Oxidation (M))|F}ANVEEG[WQ] 9 3 + 61.423 0 0 5.6954 5.6954 87.456 0 0 0 41.95940619637945 6.0822685886482475 6.0822685886482475 9.208187539523749 0 0.8494850021680094 0 0.7614393726401688 0.3252574989159953 {M(Oxidation (M))|F}ANVEEG[WQ];{M(Oxidation (M))|F}AGGVEEG[WQ];{[MS]|[{M(Oxidation (M))|F}A]}N[WE]VNAE;{[MS]|[{M(Oxidation (M))|F}A]}NVEWNAE;{[MS]|[{M(Oxidation (M))|F}A]}NGEEV[WQ];{[MS]|[{M(Oxidation (M))|F}A]}N[WE]VGGAE;{[MS]|[{M(Oxidation (M))|F}A]}GG[WE]VNAE;{[MS]|[{M(Oxidation (M))|F}A]}NVEWGGAE;{[MS]|[{M(Oxidation (M))|F}A]}GGVEWNAE;{[MS]|[{M(Oxidation (M))|F}A]}GGGEEV[WQ] 5.6954;4.8416;4.5636;4.2265;3.8144;3.7098;3.7098;3.3727;3.3727;2.9605 -;-;-;-;-;-;-;-;-;- 316 + NaN NaN 104927.4 NaN 6194 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8565 44.212 NaN 112530 35 0 19155 0.261 + 10508 IPENNPVKL 9 48 512.295195449731 1022.5758379662619 2 512.295166015625 MULTI HCD FTMS 0 0 0 8560 37444.33984375 0.2703512423732232 9 -0.2574653625488281 5 Unmodified _IPENNPVKL_ ENSG00000158769|ENST00000368026|F11R;nc|ENSG00000158769|Q9Y624-2|F11R 10.799506525563784 0.2670509983294061 1 K{I|L} 2 7 20.445 0 0 1.9994 0 0 763.3878459809384 0 763.3878459809384 0 10.981362441963327 0 0 0 0.4247425010840047 0 0 0 + K{I|L} 1.9994 + + 19 NaN NaN 119579.8 NaN 6195 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8566 44.215 NaN 71437 35 0 25185 0.261 -1 MHCDGGISMIL 11 13 617.7667767595063 1233.5190005858126 2 617.7665405273438 MULTI HCD FTMS 0 0 0 8560 24218.6171875 0.3158118272789157 3 -0.085845947265625 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 2.735195868890462 0.4069250265843076 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 26.198 0 0 2.1238 0 0 842.302537986525 0 842.302537986525 0 26.197887582883936 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.1238 + + 3 NaN NaN 107250.6 NaN 6196 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8567 44.218 NaN 42758 35 0 3340.3 0.261 + 3363 EEQKNLHFF 9 29 596.2932631351622 1190.5719733371243 2 596.2930297851562 MULTI HCD FTMS 0 0 0 8560 22522.2421875 0.7941867841600226 1 -0.0330963134765625 7 Unmodified _EEQKNLHFF_ ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F}V[WY]{M(Oxidation (M))|F} 5 8 16.198 0 0 1.3605 0 0 430.2058277814469 0 430.2058277814469 0 12.897131498072124 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V[WY]{M(Oxidation (M))|F} 1.3605 - 37 NaN NaN 101233.8 NaN 6197 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8568 44.222 NaN 53180 35 0 6391.1 0.263 + 25106 SAEPSPTVM 9 34 459.71536875500226 917.4161845768045 2 459.7154541015625 MULTI HCD FTMS 0 0 0 8560 14340.8583984375 0.5233603042260243 1 -0.0330963134765625 8 Unmodified _SAEPSPTVM_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 10.823927491677226 0.26684000660059787 1 M 1 8 20.485 0 0 2.2329 0 0 768.3655081625452 0 768.3655081625452 0 10 0 0 0 0.5 0 0 0 + M 2.2329 + + 3 + NaN NaN 87738.5 NaN 6198 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8569 44.225 NaN 50329 35 0 6194.1 0.261 -1 MVDDRLVTM 9 30 548.2618015174235 NaN 0 548.26123046875 PEAK HCD FTMS 0 0 0 8560 9603.125 0.37291276588370004 10 -0.29160308837890625 9 Oxidation (M) _MVDDRLVTM(Oxidation (M))_ ENSG00000075785|ENST00000265062|RAB7A;ENST00000491681.1_1_3:128514210-128516981:+|nuORF 5.296884461304476 0.2695788793730278 1 T 1 -1 11.99 0 0 1.0954 0 0 165.05551113855932 825.3925422219056 990.4480533604649 0 0 0 0 0 0.5 0 0 0 T 1.0954 + + 3 + NaN NaN 92217.3 NaN 6199 2368 8560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8571 44.23 NaN 690670 35 0 111000 0.327 -1 NLMNELKQNF 10 65 422.87649346539007 1265.6076509963702 3 422.8764953613281 MULTI HCD FTMS 0 0 0 8570 296661.9375 0.31675142126670913 6 -0.17154312133789062 1 Oxidation (M) _NLM(Oxidation (M))NELKQNF_ ENSG00000111907|ENST00000534000|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;nc|ENSG00000111907|Q16890-2|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-5|TPD52L1;RNF217-TPD52L1|1|fusion;RNF217-TPD52L1|2|fusion;RNF217-TPD52L1|3|fusion 6.1918466704503565 0.44252927588099017 1 Q{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.3875 0 0 972.4736032627544 0 972.4736032627544 0 24.731975075880328 0 0 0 0.5 0 0 0.4247425010840047 Q{M(Oxidation (M))|F} 2.3875 - 29 NaN NaN 182368.7 NaN 6200 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8572 44.234 NaN 445300 35 0 32873 0.261 + 10017 IETLAEKFR 9 91 553.8131789121136 1105.611804891027 2 553.8318481445312 MULTI HCD FTMS 0 0 0 8570 28813.119140625 0.7345950482426167 1 -0.029693603515625 2 Unmodified _IETLAEKFR_ ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196|AFDN 26.88365393820708 0.12808753336095696 1 MET{I|L}AK{[TV]|[{I|L}S]}[{I|L}T] 10 6 + 56.387 0 0 5.1001 5.1001 81.604 0 0 0 33.37205316164642 3.94103076728328 3.94103076728328 0.2422750325201406 0 0 0 1.5752574989159953 0 MET{I|L}AK{[TV]|[{I|L}S]}[{I|L}T];MTE{I|L}AK{[TV]|[{I|L}S]}[{I|L}T];MT{I|L}EAK{[TV]|[{I|L}S]}[{I|L}T];[Y{I|L}]RKA{I|L}E[DV];ME{I|L}TAK{[TV]|[{I|L}S]}[{I|L}T];[Y{I|L}]RKAE{I|L}[DV];[Y{I|L}]KRA{I|L}E[DV];[Y{I|L}]KRAE{I|L}[DV];[YR]{I|L}KA{I|L}E[DV];[Y{I|L}]K[VG]A{I|L}T{[QN]|[E{I|L}]|[KN]} 5.1001;5.0782;4.698;4.552;4.4437;4.1718;3.6101;3.2299;3.1561;2.7992 -;-;-;-;-;-;-;-;-;- 1393 + NaN NaN 147344.3 NaN 6201 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8573 44.238 NaN 852010 35 0 263640 0.263 + -1 LRQRKDKMR 9 71 416.2435305890866 1245.70876236746 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8570 316664.71875 0.5748526912007741 14 -0.3828620910644531 3 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 6.630372943996041 0.3007538891620783 1 {I|L}R[HN]{I|L}WK 7 -1 30.974 0 0 2.4864 0 0 0 295.14045129947505 295.14045129947505 9.277807052660805 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R[HN]{I|L}WK 2.4864 - 139 + NaN NaN 216364 NaN 6202 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8574 44.241 NaN 466190 35 0 33114 0.261 + 28741 TTAENEFVM 9 81 529.2290398088994 1056.4435266845987 2 529.22900390625 MULTI HCD FTMS 0 0 0 8570 107830.703125 0.565874322162154 3 -0.08577346801757812 4 Oxidation (M) _TTAENEFVM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant 88.95385435242217 0.004553379958619559 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YADVSV{M(Oxidation (M))|F} 9 6 + 48.312 0 0 4.5731 4.5731 86.744 0 0 0 13.46787486224656 1.6202441972269241 1.6202441972269241 10.796896906561031 0 0.7742275032520141 0 0.6747425010840047 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YADVSV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}MSADVSV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}MSWVSV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[KG]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AP{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YAD[TA]{I|L}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[EP][YN]SV{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA][{M(Oxidation (M))|F}E]SV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{[CP]|[EA]}{[CT]|[{M(Oxidation (M))|F}G]}VSV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[WK]E{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[NS]{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}E]SV{M(Oxidation (M))|F} 4.5731;3.5511;2.9811;2.1969;2.1836;2.0784;2.0731;2.0411;1.9347;1.7248 -;-;-;-;-;-;-;-;-;- 950 + NaN NaN 157813.2 NaN 6203 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8575 44.245 NaN 167560 35 0 29143 0.261 + 3772 EPASPEQEL 9 41 500.23507287955914 998.4555928259183 2 500.2349548339844 MULTI HCD FTMS 0 0 0 8570 107894.8984375 1 0 0 5 Unmodified _EPASPEQEL_ ENSG00000148773|ENST00000368654|MKI67 57.72198328787511 0.020768266150574023 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QE{I|L} 6 5 39.13 0 0 3.919 0 0 251.12642104316564 0 251.12642104316564 0 19.59691590396389 0 0 0 0.805462187404089 0 0.805462187404089 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QE{I|L} 3.919 - 47 NaN NaN 111561.9 NaN 6204 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8576 44.248 NaN 165130 35 0 31869 0.261 -1 MPTKTIEVL 9 40 524.2913433954229 1046.5681338576458 2 524.2911987304688 MULTI HCD FTMS 0 0 0 8570 83362.046875 0.46776267210440514 -4 0.12548065185546875 6 Oxidation (M) _M(Oxidation (M))PTKTIEVL_ ENSG00000175581|ENST00000310614|MRPL48;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48 26.268140514670165 0.13340543277302316 1 EV{I|L} 3 -1 34.693 0 0 3.3149 0 0 687.3665638654312 0 687.3665638654312 0 19.51544993495972 0 0 0 0.4247425010840047 0 0.4247425010840047 0 EV{I|L} 3.3149 + + 17 NaN NaN 107186.5 NaN 6205 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8577 44.251 NaN 216260 35 0 28113 0.261 + 9127 HPHDLVILM 9 32 545.7892768338711 1089.564000734542 2 545.7892456054688 MULTI HCD FTMS 0 0 0 8570 77106.5703125 0.278691248787776 -6 0.17810821533203125 7 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 77.98433622928108 0.006504613272346738 1 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 8 5 67.288 0 0 6.1757 0 0 183.05607944723585 0 183.05607944723585 0 46.08980357040103 0 0 0 1.8807196863200843 0 0 0 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 6.1757 - 167 + NaN NaN 117604.3 NaN 6206 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8578 44.255 NaN 99287 35 0 11560 0.261 -1 YPESESIMM 9 36 559.7224920098566 1117.4304310865132 2 559.7222290039062 MULTI HCD FTMS 0 0 0 8570 40206.32421875 0.2837289749355927 18 -0.5040969848632812 8 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.11819662193267319 1 T{M(Oxidation (M))|F}[RH]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 34.13 0 0 3.0543 0 0 63.99753138903436 0 63.99753138903436 0 27.140012553530966 0 0 0 0.5 0 0.8494850021680094 0 T{M(Oxidation (M))|F}[RH]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0543 - 35 + NaN NaN 110559.6 NaN 6207 2369 8570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8580 44.26 NaN 634310 35 0 99833 0.327 + 28550 TPSVHEPVL 9 58 489.7663107542688 977.5180685753376 2 489.7662353515625 MULTI HCD FTMS 0 0 0 8579 325041.625 0.49282197219342794 3 -0.08576202392578125 1 Unmodified _TPSVHEPVL_ ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF 107.99703571036002 0.003269392969029945 1 [TP][VS]HEPV{I|L} 9 0 + 80.097 0 0 8.1939 8.1939 89.411 0 0 0 5.536049848239344 16.478174818886373 5.536049848239344 5.536049848239344 0 2.0356668758921828 1.3010299956639813 1.6307196863200843 0 + + [TP][VS]HEPV{I|L};[VP]{[MG]|[TS]}HEPV{I|L};[VP]N[NP]EPV{I|L};TP[VS]HEPV{I|L};[VP]GG[NP]EPV{I|L};{[VA]|[{I|L}G]}[DV]HEPV{I|L} 8.1939;7.6276;7.058;6.2218;6.116;5.7904 +;-;-;+;-;- + 206 NaN NaN 172595.5 NaN 6208 2370 8579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8581 44.264 NaN 584110 35 0 119320 0.261 -1 HPFFKDMSL 9 54 569.2734612342365 1136.532369535273 2 569.2732543945312 MULTI HCD FTMS 0 0 0 8579 243643.921875 0.5723431933741372 -11 0.3297462463378906 2 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 27.628801355627647 0.12213550946336599 1 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.329228844238 752.329228844238 13.762874945799766 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 158 + NaN NaN 185010.8 NaN 6209 2370 8579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8582 44.268 NaN 99413 35 0 6290.7 0.261 + 20163 NYKKFYEQF 9 45 633.8114714375128 1265.6083899418254 2 633.8111572265625 MULTI HCD FTMS 0 0 0 8579 89387.4765625 0.24773939046081841 7 -0.19467544555664062 3 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 49.74193281347159 0.03193181027262171 1 NYK[MD]{I|L}T 7 6 66.598 0 0 5.2622 0 0 0 397.1722811334594 397.1722811334594 34.731522780016775 0 0 0 0 0.3807196863200844 2 0.4247425010840047 0.3807196863200844 NYK[MD]{I|L}T 5.2622 - 111 + NaN NaN 105228.1 NaN 6210 2370 8579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8583 44.271 NaN 104910 35 0 29618 0.261 -1 RYKLYQEMF 9 24 647.3183876650669 1292.6222223969337 2 647.8199462890625 MULTI HCD FTMS 0 0 0 8579 50335.58984375 0.7262552732211949 5 -0.14184951782226562 4 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 21.536976647645854 0.1742816388551942 1 [YR]K{I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 9 -1 + 42.681 0 0 3.3019 3.3019 84.119 0 0 0 5.6424927368725974 37.19659678281481 5.6424927368725974 9.208187539523749 0 0.3807196863200844 0 0 0 [YR]K{I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E;[YR]K{I|L}Y[AG]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 3.3019;2.5895 -;- 67 NaN NaN 95153.4 NaN 6211 2370 8579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8584 44.274 NaN 117060 35 0 14252 0.262 + 15953 LPPSHPDPAF 10 44 539.2716944625543 1076.5288359919084 2 539.271728515625 MULTI HCD FTMS 0 0 0 8579 26323.15234375 0.676382824299257 1 -0.0230560302734375 5 Unmodified _LPPSHPDPAF_ ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;nc|ENSG00000114650|Q12770-4|SCAP 18.1463463914782 0.3413772152514074 1 {I|L}P 2 8 34.949 0 0 3.2464 0 0 0 863.3688930187433 863.3688930187433 27.95880017344075 0 0 0 0 0 1.6989700043360187 0 0 + {I|L}P 3.2464 + + 5 + NaN NaN 103801 NaN 6212 2370 8579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8585 44.278 NaN 81478 35 0 8005.6 0.261 + 2175 DIEGPEGKL 9 37 479.24807099084217 956.4815890484844 2 479.2478942871094 MULTI HCD FTMS 0 0 0 8579 18599.994140625 0.3972559248016723 3 -0.08576202392578125 6 Unmodified _DIEGPEGKL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 16.149105407346934 0.22083165093524068 1 {NN|[MP]|[D{I|L}]|[EV]}{[TV]|[{I|L}S]}S 5 7 31.082 0 0 3.2496 0 0 0 438.2002529491281 438.2002529491281 16.389530984084217 0 0 0 0 0.5 2 0.5 0 {NN|[MP]|[D{I|L}]|[EV]}{[TV]|[{I|L}S]}S 3.2496 - 20 NaN NaN 102292.6 NaN 6213 2370 8579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8587 44.283 NaN 627190 35 0 124300 0.327 -1 0 65 431.88105408673914 1292.6213328604174 3 431.8811950683594 MULTI HCD FTMS 0 0 0 8586 228945.453125 0.8165336752714022 4 -0.11879348754882812 1 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.2212 0 0 980.5064501162972 0 980.5064501162972 0 12.25772496747986 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2212 - 34 NaN NaN 177832.5 NaN 6214 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8588 44.287 NaN 697060 35 0 93770 0.261 + 12478 KQYADVEGF 9 82 528.7532954358378 NaN 0 528.7533569335938 PEAK HCD FTMS 0 0 0 8586 345809.125 0.511863877109285 -3 0.085845947265625 2 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 129.77232118876745 2.4381670148515506E-13 1 GEVDAY 6 8 66.948 0 0 6.3429 0 0 165.0790272443375 253.13086310237546 418.209890346713 0 0 0 0 0 3.2302046884880937 0 1.2786596949921218 0 GEVDAY 6.3429 - 495 NaN NaN 189212.5 NaN 6215 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8589 44.291 NaN 223380 35 0 17053 0.262 -1 KMPKFKMPSF 10 60 419.55550269268406 1255.6446786782521 3 419.55584716796875 MULTI HCD FTMS 0 0 0 8586 114587.2421875 0.4595972060367705 9 -0.2648124694824219 3 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 12.855947597645695 0.39086182057914826 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.6913 0 0 1090.565758245438 0 1090.565758245438 0 1.9846155972754076 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 25 + NaN NaN 110790.1 NaN 6216 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8590 44.294 NaN 173980 35 0 17943 0.261 + 16578 LVEQVQSLI 9 44 514.8029958939343 1027.5914388546685 2 515.2947998046875 MULTI HCD FTMS 0 0 0 8586 25396.298828125 0.1327177307284445 8 -0.23537826538085938 4 Unmodified _LVEQVQSLI_ REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF 29.081581746732265 0.1154664336125038 1 {I|L}VQE 4 -1 41.612 0 0 4.0495 0 0 0 555.3154390924436 555.3154390924436 32.158496384492494 0 0 0 0 0.3935078169319297 1.6989700043360187 0.3252574989159953 0.4247425010840047 {I|L}VQE 4.0495 - 20 + NaN NaN 115879.7 NaN 6217 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8591 44.297 NaN 97692 35 0 20985 0.261 + 10917 IYADNQVMHF 10 32 627.2847556735803 1252.5549584139605 2 627.284912109375 MULTI HCD FTMS 0 0 0 8586 58836.41796875 0.7938199863709885 -1 0.0230560302734375 5 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 47.594388314883695 0.08653821083322558 1 {I|L}YADNQV{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]} 10 0 + 83.945 0 0 6.7019 6.7019 94.751 0 0 0 83.94524706148886 5.764837301042718 5.764837301042718 83.94524706148886 0 1.8539171939081172 2 0 0 + + {I|L}YADNQV{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]} 6.7019 + + 111 + NaN NaN 108055 NaN 6218 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8592 44.301 NaN 59267 35 0 8833.1 0.261 -1 AHTDNMVFYL 10 23 613.7793736424761 1225.5441943517521 2 613.7792358398438 MULTI HCD FTMS 0 0 0 8586 34116.453125 0.9677744343372963 1 -0.033023834228515625 6 Oxidation (M) _AHTDNM(Oxidation (M))VFYL_ ENSG00000179913|ENST00000318683|B3GNT3 8.155526934196011 0.43213520406898465 1 Y{I|L} 2 -1 25.969 0 0 2.119 0 0 931.3861009408298 0 931.3861009408298 0 25.969100130080562 0 0 0 0.5 0 0 0 Y{I|L} 2.119 + + 2 NaN NaN 93905.4 NaN 6219 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8593 44.304 NaN 45770 35 0 14306 0.261 + 24170 RYFDPANGKF 10 19 607.801264180245 1213.5879754272898 2 607.8010864257812 MULTI HCD FTMS 0 0 0 8586 24420.365234375 0.03878705733116238 34 -0.9422225952148438 7 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 6.630372943996041 0.44020808660041416 1 NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4 6 16.198 0 0 1.3347 0 0 749.35161025215 0 749.35161025215 0 16.197887582883936 0 0 0 0 0 0 0 + NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.3347 + + 6 NaN NaN 108503.3 NaN 6220 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8594 44.307 NaN 68939 35 0 15198 0.262 + -1 CTMKSCIR 8 31 507.731324707285 NaN 0 507.7308654785156 PEAK HCD FTMS 0 0 0 8586 15806.029296875 0.26033649528037006 13 -0.3724250793457031 8 Carbamidomethyl (C),Oxidation (M) _CTM(Oxidation (M))KSC(Carbamidomethyl (C))IR_ REV__ENST00000265087.8_1_5:172742951-172743134:-|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90398.5 NaN 6221 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8595 44.311 NaN 56735 35 0 6901.2 0.261 -1 RYQQWMERF 9 41 453.87995229043463 1358.6180274715039 3 453.88018798828125 MULTI HCD FTMS 0 0 0 8586 29437.583984375 0.6769789022318949 -13 0.3825569152832031 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 4.189502756095605 0.319257502753388 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.4383837720882 0 1037.4383837720882 0 15.718488650264938 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 8 + NaN NaN 103204.4 NaN 6222 2371 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8597 44.316 NaN 176960 35 0 13782 0.327 + 28353 TPDGTEKGDFL 11 55 590.2801333540709 1178.5457137749418 2 590.280029296875 MULTI HCD FTMS 0 0 0 8596 131643.515625 0.8173900498698851 1 -0.029682159423828125 1 Unmodified _TPDGTEKGDFL_ ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF 102.5486954659897 0.021543581168273363 1 [TP]DGTEKGD{M(Oxidation (M))|F}{I|L} 11 0 + 102.29 0 0 8.6791 8.6791 94.809 0 0 0 7.367585652254192 81.31791715982783 7.367585652254192 15.14909815609063 0 2.4247425010840047 0 1.8098943791441968 0 + + [TP]DGTEKGD{M(Oxidation (M))|F}{I|L};[TP]DGT[VG]TGD{M(Oxidation (M))|F}{I|L};[TP]DGETKGD{M(Oxidation (M))|F}{I|L};[TP]DGEKTGD{M(Oxidation (M))|F}{I|L};[TP]DGTEK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PT;[TP]DGT[VG]T{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PT;[TP]DGETK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PT;[TP]DGT[WK]HHT;[TP]DGEKT{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PT 8.6791;7.3937;7.298;6.7872;5.7888;4.5034;4.4078;4.3001;3.8969 +;-;-;-;-;-;-;-;- + 625 NaN NaN 125630.2 NaN 6223 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8598 44.32 NaN 250960 35 0 18654 0.261 + 267 AFLEKAADSI 10 66 532.7831621237573 NaN 0 532.7720947265625 PEAK HCD FTMS 0 0 0 8596 3912.800048828125 0.5006749984473817 1 -0.029682159423828125 2 Unmodified _AFLEKAADSI_ ENSG00000147432|ENST00000289957|CHRNB3 8.745405648335112 0.33269943387702366 1 ADQEV 5 8 24.865 0 0 2.3379 0 0 147.0920678004457 371.2046735997403 518.296741400186 0 0 0 0 0 0.3807196863200844 0 0 0 ADQEV 2.3379 - 181 + NaN NaN 118297.3 NaN 6224 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8599 44.324 NaN 142030 35 0 32118 0.261 -1 RADQFEYVM 9 29 587.7633580190948 1173.5121631049894 2 587.7633056640625 MULTI HCD FTMS 0 0 0 8596 69712.8515625 0.15905261714670968 -10 0.2968864440917969 3 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 20.41453444215458 0.18397929046831515 1 {[{M(Oxidation (M))|F}D]|MM}{I|L}{[QN]|[E{I|L}]|[KN]}EYV{M(Oxidation (M))|F} 9 -1 + 49.671 0 0 4.2327 4.2327 89.836 0 0 0 3.9254497678533085 22.503859178250778 3.9254497678533085 49.67084689121528 0 1.3807196863200843 0 0 0 {[{M(Oxidation (M))|F}D]|MM}{I|L}{[QN]|[E{I|L}]|[KN]}EYV{M(Oxidation (M))|F} 4.2327 - 68 NaN NaN 113493.8 NaN 6225 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8600 44.327 NaN 271360 35 0 16094 0.261 + 2859 DYMKTTSNF 9 94 553.7449185302046 1105.475284127209 2 553.744873046875 MULTI HCD FTMS 0 0 0 8596 46152.1484375 0.8569727778163008 1 -0.029682159423828125 4 Unmodified _DYMKTTSNF_ ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-3|NEMF;nc|ENSG00000165525|O60524-4|NEMF;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant 49.74193281347159 0.03193181027262171 1 M{M(Oxidation (M))|F}MKTTS 7 4 58.792 0 0 5.3183 0 0 0 276.0980623834594 276.0980623834594 25.186507872626755 0 0 0 0 1.8807196863200843 2 0 0.6109243748081782 M{M(Oxidation (M))|F}MKTTS 5.3183 - 812 + NaN NaN 129171.7 NaN 6226 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8601 44.33 NaN 146630 35 0 12280 0.261 + 22642 QVYQGMGQPL 10 67 560.7764776559424 1119.5384023786846 2 560.7651977539062 MULTI HCD FTMS 0 0 0 8596 38856.96484375 0.6903117261660264 -2 0.056079864501953125 5 Unmodified _QVYQGMGQPL_ ENST00000556421.5_1_14:23416818-23417238:-|nuORF 9.38312468134398 0.42334543440173333 1 MNQP{I|L} 5 6 31.911 0 0 2.8504 0 0 518.2542793301051 0 518.2542793301051 0 13.327731244245342 0 0 0 0.5 0 0 0 MNQP{I|L} 2.8504 - 173 NaN NaN 123006.3 NaN 6227 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8602 44.334 NaN 230480 35 0 38412 0.261 + 28980 TYCFGRTVE 9 56 538.2480244136303 1074.4814958940606 2 538.2474365234375 MULTI HCD FTMS 0 0 0 8596 45614.96875 0.5834751286500822 6 -0.17273330688476562 6 Unmodified _TYCFGRTVE_ ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF 20.41453444215458 0.18397929046831515 1 [YT]D 3 7 31.695 0 0 2.9498 0 0 0 692.3249605768186 692.3249605768186 7.473024840566467 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [YT]D 2.9498 - 225 + NaN NaN 130144.4 NaN 6228 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8603 44.337 NaN 115010 35 0 11562 0.261 -1 HYMSINDSF 9 38 565.2343671467892 1128.4541813603782 2 565.2342529296875 MULTI HCD FTMS 0 0 0 8596 47336.1796875 0.5200109648887543 -7 0.21125411987304688 7 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 31.26834338654808 0.10542797264966089 1 NDS{M(Oxidation (M))|F} 4 -1 53.22 0 0 4.7162 0 0 647.274629213697 0 647.274629213697 0 47.735097166722156 0 0 0 2 0 0.8807196863200843 0 NDS{M(Oxidation (M))|F} 4.7162 + + 31 + NaN NaN 96376.7 NaN 6229 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8604 44.34 NaN 77741 35 0 10031 0.261 + 28336 TNSDIVETLR 10 39 574.3010196711978 1146.5874864091954 2 574.3011474609375 MULTI HCD FTMS 0 0 0 8596 36601.76171875 0.7153939417075452 -2 0.056079864501953125 8 Unmodified _TNSDIVETLR_ ENSG00000068305|ENST00000557942|MEF2A;ENSG00000081189|ENST00000504921|MEF2C;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C 46.4752305370441 0.09060834033530853 1 {[QS]|[NT]}SD{I|L}VET[R{I|L}] 10 0 + 69.654 0 0 6.0749 6.0749 93.374 0 0 0 65.04940636348586 7.269987279362624 7.269987279362624 69.65350013324773 0 1.6989700043360187 0 0.4247425010840047 0 + + {[QS]|[NT]}SD{I|L}VET[R{I|L}] 6.0749 + + 45 + NaN NaN 100889.6 NaN 6230 2372 8596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8606 44.345 NaN 351650 35 0 34542 0.327 + 30534 VMSQALKATF 10 63 556.2940757611307 1110.5735985890612 2 556.294189453125 MULTI HCD FTMS 0 0 0 8605 211034.671875 0.6073521333336211 5 -0.1430511474609375 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 102.5486954659897 6.036587169858109E-05 1 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 94.294 0 0 8.4906 8.4906 91.561 0 0 0 7.269987279362624 88.80993969293064 7.269987279362624 9.164539485499262 0 3.504432191740108 0 1.4124379954164592 0 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TA]N{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TA]GG{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TA]N{I|L}[TA]K{M(Oxidation (M))|F} 8.4906;7.6654;6.6869;5.9335;5.8616;5.1083;4.1297 +;-;-;-;-;-;- + 809 NaN NaN 141224.5 NaN 6231 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8607 44.35 NaN 241330 35 0 65242 0.261 -1 SSGPVDPMM 9 26 468.693569896085 935.3725868589701 2 468.6935119628906 MULTI HCD FTMS 0 0 0 8605 118868.6953125 0.8811474821218804 -2 0.06270599365234375 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 4 -1 26.242 0 0 2.8055 0 0 427.20624779185437 0 427.20624779185437 0 12.74735947860492 0 0 0 0.9247425010840047 0 0.3807196863200844 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 2.8055 + + 6 NaN NaN 119456.6 NaN 6232 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8608 44.353 NaN 225170 35 0 31514 0.261 + 18006 MLIEKDPSL 9 52 531.2810358406833 1060.5475187481666 2 531.2809448242188 MULTI HCD FTMS 0 0 0 8605 69383.609375 0.40933064032108923 6 -0.17267227172851562 3 Oxidation (M) _M(Oxidation (M))LIEKDPSL_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 43.77239144664712 0.04802738721622131 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KG]{I|L}E{I|L} 9 3 + 54.817 0 0 5.1688 5.1688 90.471 0 0 0 7.904849854573683 47.34305011473481 7.904849854573683 30.6437180047066 0 0.5 1.6989700043360187 0.5994850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KG]{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT][RH]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]{NN|[MP]|[D{I|L}]|[EV]}V[EP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT][HQ][C(Carbamidomethyl (C))K] 5.1688;2.2793;1.4517;1.079 -;-;-;- 137 NaN NaN 120956.4 NaN 6233 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8609 44.357 NaN 202740 35 0 36229 0.261 + 898 AYAPPPHVI 9 37 482.76605122423734 963.5175495152747 2 482.7658996582031 MULTI HCD FTMS 0 0 0 8605 79759.3125 0.3120000308051833 8 -0.21836471557617188 4 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 28.173230860318316 0.11963627304438548 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4 5 46.242 0 0 4.7993 0 0 0 558.3034762018186 558.3034762018186 35.784634594678266 0 0 0 0 1.305462187404089 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4.7993 + + 57 + NaN NaN 109381.8 NaN 6234 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8610 44.36 NaN 115230 35 0 13595 0.261 + -1 RFLYTFWLRR 10 35 500.6144078043793 1498.821394013338 3 501.2741394042969 MULTI HCD FTMS 0 0 0 8605 4092.8759765625 0.5452380806799447 -1 0.029682159423828125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RFLYTFWLRR_ REV__ENST00000535622.5_1_22:32174140-32179938:+|nuORF 1.4551175022131473 0.4676015363898197 1 DV 2 -1 36.198 0 0 2.4151 0 0 0 1281.7056107037356 1281.7056107037356 29.20818753952375 0 0 0 0 0 1.5228787452803376 0 0 DV 2.4151 - 20 + NaN NaN 95139.3 NaN 6235 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8611 44.363 NaN 143160 35 0 13931 0.261 -1 SFHVLKNEM 9 58 560.7764776559424 1119.5384023786846 2 560.7761840820312 MULTI HCD FTMS 0 0 0 8605 22830.689453125 0.4055976247584401 -1 0.029682159423828125 6 Oxidation (M) _SFHVLKNEM(Oxidation (M))_ ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.873 0 0 807.4563233765347 0 807.4563233765347 0 6.7609125905568135 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.873 - 124 + NaN NaN 122127.2 NaN 6236 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8612 44.367 NaN 87108 35 0 13696 0.261 + 32332 VYVGAVNRI 9 35 495.78997609191555 989.5653992506311 2 495.7900390625 MULTI HCD FTMS 0 0 0 8605 27264.640625 0.491108193282115 2 -0.056087493896484375 7 Unmodified _VYVGAVNRI_ ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant 34.10243960390752 0.09241788333544565 1 [YV]VGAV 6 3 49.213 0 0 4.9732 0 0 0 398.21592127017817 398.21592127017817 49.21327198560853 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 + [YV]VGAV 4.9732 + + 43 + NaN NaN 99512.6 NaN 6237 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8613 44.37 NaN 149920 35 0 24075 0.261 + -1 FKMVKLEIER 10 49 436.9163673704084 1307.7272727114253 3 436.9165344238281 MULTI HCD FTMS 0 0 0 8605 22840.978515625 0.3681427532146357 -4 0.11545562744140625 8 Oxidation (M) _FKM(Oxidation (M))VKLEIER_ REV__ENSG00000163714|ENST00000473835|U2SURP;REV__ENST00000495088.1_1_3:72821852-72822317:+|nuORF;REV__nc|ENSG00000163714|O15042-2|U2SURP;REV__nc|ENSG00000163714|O15042-3|U2SURP 0.6268255596534771 0.47198581731947004 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2992 0 0 1142.6485964192361 0 1142.6485964192361 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2992 + + 2 + NaN NaN 121293.3 NaN 6238 2373 8605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8615 44.375 NaN 372740 35 0 30076 0.327 + 15796 LPHSATVTL 9 61 469.76877441744193 937.5229959016839 2 469.7685546875 MULTI HCD FTMS 0 0 0 8614 173541.53125 0.9134185455909154 -1 0.029693603515625 1 Unmodified _LPHSATVTL_ ENSG00000054611|ENST00000337137|TBC1D22A;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant 39.957323273324995 0.06554068735427583 1 TVT{I|L} 4 5 46.186 0 0 4.9263 0 0 505.26289565254064 0 505.26289565254064 0 35.38872836444014 0 0 0 0.9247425010840047 0 0.8494850021680094 0 + TVT{I|L} 4.9263 + + 161 NaN NaN 148818.2 NaN 6239 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8616 44.38 NaN 345690 35 0 59277 0.261 -1 NAEMIRQIEF 10 57 422.87649346539007 1265.6076509963702 3 422.8764953613281 MULTI HCD FTMS 0 0 0 8614 160030.84375 0.17086788292253757 11 -0.30294036865234375 2 Oxidation (M) _NAEM(Oxidation (M))IRQIEF_ ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9 6.1918466704503565 0.44252927588099017 1 Q{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.3875 0 0 972.4708758209447 0 972.4708758209447 0 9.045612717470206 0 0 0 0.5 0 0 0.4247425010840047 Q{M(Oxidation (M))|F} 2.3875 - 24 NaN NaN 136328.6 NaN 6240 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8617 44.383 NaN 307900 35 0 12157 0.261 + 5497 FKIWKTHF 8 76 553.8131789121136 1105.611804891027 2 553.83203125 MULTI HCD FTMS 0 0 0 8614 3582.08056640625 0.09132571290339865 6 -0.17241287231445312 3 Unmodified _FKIWKTHF_ ENSG00000166262|ENST00000299338|FAM227B;ENST00000558615.5_1_15:49867204-49907386:-|nuORF;nc|ENSG00000166262|Q96M60-2|FAM227B 5.760428011301431 0.5334459684533844 1 MTE{I|L}AK 6 7 30.087 0 0 2.7213 0 0 0 429.2247408502563 429.2247408502563 5.617968113107068 0 0 0 0 0 0 0.4247425010840047 0 MTE{I|L}AK 2.7213 - 321 + NaN NaN 147491.8 NaN 6241 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8618 44.386 NaN 97197 35 0 25039 0.261 + 13398 KYPDRVPVI 9 33 543.8189040817973 1085.6232552303945 2 543.8193359375 MULTI HCD FTMS 0 0 0 8614 54537.88671875 0.04572380583166696 26 -0.7081260681152344 4 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 15.248480904072842 0.22861284681709862 1 KY 2 7 22.959 0 0 2.1148 0 0 0 791.4419122421369 791.4419122421369 5.969100130080562 0 0 0 0 0.5 0 0 0 + KY 2.1148 + + 14 + NaN NaN 100651.2 NaN 6242 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8619 44.39 NaN 68171 35 0 10032 0.261 -1 0 28 512.7326878923853 1023.4508228515707 2 512.7322998046875 MULTI HCD FTMS 0 0 0 8614 30377.98828125 0.019464168608954224 53 -1.4845619201660156 5 NaN NaN 1 D{I|L} 2 -1 25.969 0 0 2.5374 0 0 777.326926813213 0 777.326926813213 0 21.989700043360187 0 0 0 0.5 0 0 0 D{I|L} 2.5374 - 7 NaN NaN 95522.7 NaN 6243 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8620 44.393 NaN 55100 35 0 7323.3 0.261 -1 YYRGNYMTF 9 29 615.7661041210841 1229.5176553089682 2 615.765625 MULTI HCD FTMS 0 0 0 8614 12321.2568359375 0.3450592807761029 5 -0.14297866821289062 6 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ ENSG00000204574|ENST00000326195|ABCF1;nc|ENSG00000204574|Q8NE71-2|ABCF1 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.1307 0 0 816.3524647443375 0 816.3524647443375 0 19.20818753952375 0 0 0 0 0 0 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.1307 + + 8 NaN NaN 93689.1 NaN 6244 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8621 44.396 NaN 138790 35 0 20042 0.262 + 3959 EQKENQSF 8 50 505.23255274684044 1008.4505525604809 2 505.2300109863281 MULTI HCD FTMS 0 0 0 8614 22375.017578125 0.15416115566087502 7 -0.18867111206054688 7 Unmodified _EQKENQSF_ REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 8.745405648335112 0.5290173259557154 1 EVT{M(Oxidation (M))|F} 4 -1 35.433 0 0 3.5136 0 0 514.23930556465 0 514.23930556465 0 33.650313664272154 0 0 0 0.5 0 0 0 EVT{M(Oxidation (M))|F} 3.5136 - 31 NaN NaN 97524 NaN 6245 2374 8614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8623 44.402 NaN 1020700 35 0 172860 0.327 -1 HPFFKDMSL 9 88 569.2734612342365 1136.532369535273 2 569.2733764648438 MULTI HCD FTMS 0 0 0 8622 359783.3125 0.8451658814810117 -6 0.17154312133789062 1 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 38.175570920033316 0.07371992880350783 1 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 6 -1 33.136 0 0 2.9155 0 0 0 344.1267489068969 344.1267489068969 -4.932562101416174 0 -4.932562101416174 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 2.9155 - 2283 + NaN NaN 244525.5 NaN 6246 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8624 44.406 NaN 653430 35 0 183650 0.264 + -1 LRQRKDKMR 9 69 416.2435305890866 1245.70876236746 3 416.2435302734375 MULTI HCD FTMS 0 0 0 8622 221002.875 0.4011943545790362 20 -0.5599784851074219 2 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 10.150570793230772 0.27265765907388223 1 {I|L}R[HN]{I|L}W{I|L} 7 -1 27.756 0 0 2.2282 0 0 0 310.16205774478755 310.16205774478755 11.787368767790287 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R[HN]{I|L}W{I|L} 2.2282 - 98 + NaN NaN 178179.1 NaN 6247 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8625 44.41 NaN 454210 35 0 60205 0.261 + 9128 HPHDLVILM 9 51 545.7892768338711 1089.564000734542 2 545.7892456054688 MULTI HCD FTMS 0 0 0 8622 276673.8125 1 0 0 3 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 85.35673624503755 0.00464763827098139 1 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 8 5 68.608 0 0 6.2969 0 0 183.05432839227802 0 183.05432839227802 0 45.64957542276183 0 0 0 1.9247425010840047 0 0 0 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 6.2969 - 263 + NaN NaN 153728.9 NaN 6248 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8626 44.413 NaN 320280 35 0 48258 0.261 + 24662 RYLSPKYIKMF 11 59 487.93555575279356 1460.7848378585807 3 487.9353942871094 MULTI HCD FTMS 0 0 0 8622 93535.0625 0.293576450106053 19 -0.5236434936523438 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 40.714236015149055 0.13235015639469747 1 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 6 44.425 0 0 3.0412 0 0 744.4286330251194 0 744.4286330251194 0 40.38364391835536 0 0 0 1.4247425010840047 0 0 0 + Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0412 + + 55 + NaN NaN 137986.2 NaN 6249 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8627 44.416 NaN 212370 35 0 36190 0.261 + 18425 MPTTERVTL 9 46 524.2785228474055 1046.542492761611 2 524.2911376953125 MULTI HCD FTMS 0 0 0 8622 13106.6875 0.07562177178024548 -6 0.17154312133789062 5 Unmodified _MPTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 9.38312468134398 0.279288223203164 1 VE 2 8 17.831 0 0 1.7038 0 0 131.07040201432898 684.3407076471311 815.4111096614602 0 0 0 0 0 0 0 0.6861818737241735 0 VE 1.7038 - 23 + NaN NaN 131986.4 NaN 6250 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8628 44.42 NaN 1024600 35 0 64874 0.261 + 1572 AYVHMVTHF 9 100 552.7683154465186 1103.5220779598371 2 552.768798828125 MULTI HCD FTMS 0 0 0 8622 258413.15625 0.1584786555328405 -4 0.11879348754882812 6 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 102.08 0 0 9.2499 9.2499 95.404 0 0 0 56.224763633723605 23.186362358410122 23.186362358410122 14.478788029854059 0 2.5924778212679485 2 0.6307196863200843 0 + + AYVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WN]|[YH]}H{[ES]|[DT]|[{I|L}C]}V;AW{[NV]|[RG]}MVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{[WN]|[YH]}V{[ES]|[DT]|[{I|L}C]};AW[Q{I|L}]CVTH{M(Oxidation (M))|F};AQ[W{I|L}]CVTH{M(Oxidation (M))|F};[HV]MTG[Y{I|L}]H{M(Oxidation (M))|F};[HV]MT{M(Oxidation (M))|F}[VS]H{M(Oxidation (M))|F} 9.2499;7.9379;7.8906;4.3322;4.3132;4.219;3.4909;3.3584;3.1635;2.8907 +;+;-;-;-;-;-;-;-;- + 1799 + NaN NaN 231338.2 NaN 6251 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8629 44.423 NaN 136090 35 0 22053 0.261 -1 WTPCTKVM 8 39 491.2305438862112 980.4465348392224 2 491.22222900390625 MULTI HCD FTMS 0 0 0 8622 14871.609375 0.1029843711554646 -6 0.17154312133789062 7 Oxidation (M) _WTPCTKVM(Oxidation (M))_ ENSG00000168081|ENST00000301908|PNOC 14.581692164780916 0.48650662947107914 1 V{I|L}D[NG]V{M(Oxidation (M))|F} 7 -1 34.711 0 0 3.5403 0 0 218.07274062324376 0 218.07274062324376 0 10.414025960176119 0 0 0 0 0 0.3252574989159953 0.4247425010840047 V{I|L}D[NG]V{M(Oxidation (M))|F} 3.5403 - 92 NaN NaN 102694.7 NaN 6252 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8630 44.426 NaN 69705 35 0 8862 0.261 + 3773 EPASPEQEL 9 38 500.23507287955914 998.4555928259183 2 500.2347717285156 MULTI HCD FTMS 0 0 0 8622 24107.904296875 0.22343877834817114 6 -0.1622772216796875 8 Unmodified _EPASPEQEL_ ENSG00000148773|ENST00000368654|MKI67 12.240655878213236 0.2545997876781172 1 EQE{I|L} 4 5 26.899 0 0 2.6941 0 0 481.219530174025 0 481.219530174025 0 23.404112767164733 0 0 0 0 0 0.4247425010840047 0 + EQE{I|L} 2.6941 + + 15 NaN NaN 90204.8 NaN 6253 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8631 44.43 NaN 179380 35 0 34826 0.261 + 2509 DSITVPVAR 9 45 479.27151172709193 956.5284705209839 2 479.2713623046875 MULTI HCD FTMS 0 0 0 8622 59007.16796875 0.6335063074113498 -1 0.026393890380859375 9 Unmodified _DSITVPVAR_ ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1 47.748688679222035 0.03472022231463587 1 {[DS]|[MA]|[CV]|TT}{I|L}TV 5 4 43.377 0 0 4.5348 0 0 0 438.2466031820383 438.2466031820383 36.382104921644455 0 0 0 0 1.8807196863200843 0 1.2887254899964358 0 + {[DS]|[MA]|[CV]|TT}{I|L}TV 4.5348 + + 43 NaN NaN 105881.1 NaN 6254 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8632 44.433 NaN 147200 35 0 26223 0.261 + 17226 LYNRTMVQL 9 48 577.3050412553038 1152.5955295774074 2 577.3056640625 MULTI HCD FTMS 0 0 0 8622 66050.3515625 0.6957067672148943 -6 0.17154312133789062 10 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 41.95555342248728 0.056367691549927025 1 VQ{I|L} 3 6 38.5 0 0 3.3403 0 0 794.3745594709 0 794.3745594709 0 33.01538440272459 0 0 0 0.805462187404089 0 0 0.4247425010840047 + VQ{I|L} 3.3403 + + 109 NaN NaN 126975.2 NaN 6255 2375 8622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8634 44.438 NaN 784860 35 0 122880 0.327 + 12479 KQYADVEGF 9 73 528.7532954358378 NaN 0 528.7533569335938 PEAK HCD FTMS 0 0 0 8633 419131.28125 0.6203947412851156 2 -0.05059814453125 1 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 198.2503983107462 1.1171444736344865E-36 1 GEVDAY 6 8 74.774 0 0 7.0843 0 0 165.078905174025 253.12991026562477 418.2088154396498 0 0 0 0 0 3.274227503252014 0 1.8411290632962718 0 GEVDAY 7.0843 - 666 NaN NaN 211248.9 NaN 6256 2376 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8635 44.442 NaN 181840 35 0 12234 0.262 -1 KMPKFKMPSF 10 60 419.55550269268406 1255.6446786782521 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8633 78728.0546875 0.31576982987231883 14 -0.3852729797363281 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 8.444304893310646 0.4306066564229251 1 K{M(Oxidation (M))|F} 2 -1 26.454 0 0 2.1068 0 0 962.4692249982437 0 962.4692249982437 0 4.771212547196626 0 0 0 0.5 0 0 0.5 K{M(Oxidation (M))|F} 2.1068 + + 11 NaN NaN 128092 NaN 6257 2376 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8636 44.446 NaN 85282 35 0 8143.7 0.261 -1 YPESESIMM 9 36 559.7224920098566 1117.4304310865132 2 559.7224731445312 MULTI HCD FTMS 0 0 0 8633 31268.6953125 0.22065769604602814 25 -0.6816902160644531 3 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.324 0 0 805.3463619233407 0 805.3463619233407 0 11.365006360318688 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.324 + + 16 NaN NaN 91629.5 NaN 6258 2376 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8637 44.449 NaN 85858 35 0 18062 0.261 -1 RYKLYQEMF 9 29 647.3183876650669 1292.6222223969337 2 647.8197021484375 MULTI HCD FTMS 0 0 0 8633 31983.44921875 0.46146570891537203 11 -0.2961883544921875 4 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 17.11289562659939 0.2125047172822487 1 {I|L}YQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 6 -1 41.631 0 0 3.2207 0 0 447.26130873847814 0 447.26130873847814 0 36.146387799684874 0 0 0 0.3494850021680094 0 0 0 {I|L}YQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.2207 - 63 NaN NaN 104658.8 NaN 6259 2376 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8639 44.454 NaN 405950 35 0 110640 0.327 + 22988 RADQFEYVM 9 37 587.7633580190948 1173.5121631049894 2 587.763427734375 MULTI HCD FTMS 0 0 0 8638 242783.890625 0.5539210108246211 -5 0.1385955810546875 1 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 47.594388314883695 0.03493607795751234 1 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 3 71.943 0 0 6.1306 0 0 342.16417128730626 0 342.16417128730626 0 66.45873464120562 0 0 0 2.4247425010840047 0 0.3807196863200844 0.4247425010840047 + Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6.1306 + + 76 NaN NaN 152304.4 NaN 6260 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8640 44.459 NaN 578120 35 0 167510 0.261 + 2389 DPHEREFVI 9 42 571.2854370001984 1140.5563210671967 2 571.2850341796875 MULTI HCD FTMS 0 0 0 8638 175938.359375 0.770942312845767 -2 0.052825927734375 2 Unmodified _DPHEREFVI_ ENSG00000066117|ENST00000394963|SMARCD1;nc|ENSG00000066117|Q96GM5-2|SMARCD1 13.614867670302875 0.2427269026982664 1 DPHE 4 5 32.735 0 0 2.8701 0 0 0 659.3519381158811 659.3519381158811 6.537209583838219 0 0 0 0 0 0 0.3807196863200844 0 + DPHE 2.8701 + + 38 + NaN NaN 176593.9 NaN 6261 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8641 44.462 NaN 179280 35 0 29331 0.261 + 27527 TAAENEFVT 9 47 491.2305438862112 980.4465348392224 2 491.2207336425781 MULTI HCD FTMS 0 0 0 8638 48065.7421875 0.3328503397636056 -4 0.10891342163085938 3 Unmodified _TAAENEFVT_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 20.41453444215458 0.18397929046831515 1 {M(Oxidation (M))|F}VT 3 6 31.995 0 0 3.2633 0 0 615.25102431465 0 615.25102431465 0 1.025684359364405 0 0 0 0.7302046884880937 0 0 0 + {M(Oxidation (M))|F}VT 3.2633 + + 73 NaN NaN 115462.8 NaN 6262 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8642 44.466 NaN 143820 35 0 17522 0.261 + 22048 QGIGTDVYL 9 27 483.25063973100833 964.4867265288167 2 483.2498779296875 MULTI HCD FTMS 0 0 0 8638 42512.1953125 0.027855190832767242 18 -0.5071525573730469 4 Unmodified _QGIGTDVYL_ ENSG00000103507|ENST00000219794|BCKDK;ENST00000394950.7_1_16:31123427-31123583:+|nuORF 19.256988751693697 0.19398022840297344 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A 3 8 27.447 0 0 2.8458 0 0 0 656.3268018300049 656.3268018300049 -0.9691001300805624 0 -0.9691001300805624 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A 2.8458 - 15 NaN NaN 100417.7 NaN 6263 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8643 44.469 NaN 34689 35 0 6274.7 0.261 + 20164 NYKKFYEQF 9 25 633.8114714375128 1265.6083899418254 2 633.8109741210938 MULTI HCD FTMS 0 0 0 8638 43515.765625 0.12060491766803069 14 -0.38834381103515625 5 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 9.5439744041441 0.27789851728676895 1 [YN]K 3 6 33.952 0 0 2.6827 0 0 0 857.3819063775999 857.3819063775999 25.880456295278407 0 0 0 0 0 2 0 0.3494850021680094 + [YN]K 2.6827 + + 17 + NaN NaN 96742.9 NaN 6264 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8644 44.473 NaN 88393 35 0 10246 0.263 + 32993 YASVEVSKL 9 47 498.2739442350835 994.533335536967 2 498.2738037109375 MULTI HCD FTMS 0 0 0 8638 39485.5859375 0.7303185617182624 -2 0.052825927734375 6 Unmodified _YASVEVSKL_ CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF;nc|ENSG00000102974|P49711-2|CTCF 40.23920728925047 0.06424668180817725 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEVSK{I|L} 9 0 + 64.063 0 0 6.4416 6.4416 92.387 0 0 0 46.58924985774085 9.009461452434238 9.009461452434238 26.30621979200862 0 1.4247425010840047 1.6989700043360187 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEVSK{I|L};[KS]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}WC{I|L} 6.4416;3.7965 +;- + 140 + NaN NaN 99892.4 NaN 6265 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8645 44.477 NaN 93056 35 0 9245.1 0.261 + 24635 RYLQKIEEF 9 38 613.3322049231297 1224.6498569130592 2 613.3319702148438 MULTI HCD FTMS 0 0 0 8638 38464.84765625 0.6603026958143975 -3 0.07921981811523438 7 Unmodified _RYLQKIEEF_ ENSG00000026559|ENST00000371571|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant;nc|ENSG00000026559|Q9UIX4-2|KCNG1 15.248480904072842 0.22861284681709862 1 [{M(Oxidation (M))|F}E][RK]K{I|L}EE{M(Oxidation (M))|F} 9 4 + 44.939 0 0 3.6695 3.6695 89.018 0 0 0 1.2224122066494658 43.34507800221289 1.2224122066494658 44.93887181533495 0 0.3054621874040891 0 0 0 [{M(Oxidation (M))|F}E][RK]K{I|L}EE{M(Oxidation (M))|F} 3.6695 - 25 NaN NaN 102383.4 NaN 6266 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8646 44.48 NaN 307150 35 0 31098 0.261 + 12084 KKFLNSQVI 9 62 538.826404668847 1075.6382564044939 2 538.825927734375 MULTI HCD FTMS 0 0 0 8638 66196.828125 0.9812486552001514 -2 0.052825927734375 8 Unmodified _KKFLNSQVI_ REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF;REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF;REV__nc|ENSG00000134516|Q92608-2|DOCK2 13.042465956692817 0.2476723265019929 1 KV{I|L} 3 -1 24.922 0 0 2.3169 0 0 717.3792591779312 0 717.3792591779312 0 3.750612633917001 0 0 0 0 0 0 0.6505149978319906 KV{I|L} 2.3169 - 88 NaN NaN 133194.9 NaN 6267 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8647 44.483 NaN 32503 35 0 3485.5 0.261 + 28354 TPDGTEKGDFL 11 21 590.2801333540709 1178.5457137749418 2 590.2791137695312 MULTI HCD FTMS 0 0 0 8638 36820.8828125 0.22862518594608952 6 -0.1584930419921875 9 Unmodified _TPDGTEKGDFL_ ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF 6.1918466704503565 0.39176533041107 1 TPD 3 8 24.693 0 0 2.0952 0 0 0 862.3967989557249 862.3967989557249 20.713337517843655 0 0 0 0 0 0 0 0 + TPD 2.0952 + + 7 + NaN NaN 86340.5 NaN 6268 2377 8638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8649 44.489 NaN 192590 35 0 18990 0.326 + 30535 VMSQALKATF 10 50 556.2940757611307 1110.5735985890612 2 556.2938232421875 MULTI HCD FTMS 0 0 0 8648 137076.796875 0.3945033499608236 10 -0.2752799987792969 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 80.89551112106177 0.004675122492633826 1 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 69.939 0 0 6.2976 6.2976 91.34 0 0 0 0.3387731681203263 64.45487315475208 0.3387731681203263 18.953650195120836 0 3.0924778212679485 0 1.055462187404089 0 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F} 6.2976;4.5909 +;- + 185 NaN NaN 112857.9 NaN 6269 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8650 44.493 NaN 184700 35 0 18138 0.261 + 9804 HYMSINDSF 9 51 565.2343671467892 1128.4541813603782 2 565.2342529296875 MULTI HCD FTMS 0 0 0 8648 75166.6875 0.8257426339094334 -1 0.034137725830078125 2 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 53.832793166522166 0.026208976789938845 1 VTNDS{M(Oxidation (M))|F} 6 5 61.503 0 0 5.4502 0 0 447.15782363105626 0 447.15782363105626 0 49.820618910682484 0 0 0 1.8494850021680094 0 0.4247425010840047 0 VTNDS{M(Oxidation (M))|F} 5.4502 - 125 NaN NaN 108636.5 NaN 6270 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8651 44.496 NaN 131350 35 0 10334 0.261 + -1 MREEMVTV 8 55 505.7372140993976 1009.4598752655952 2 506.2178649902344 MULTI HCD FTMS 0 0 0 8648 12456.697265625 1 0 0 3 Oxidation (M) _MREEM(Oxidation (M))VTV_ REV__ENSG00000100503|ENST00000530997|NIN;REV__ENST00000476352.5_1_14:51190183-51197646:-|nuORF;REV__nc|ENSG00000100503|Q8N4C6-10|NIN;REV__nc|ENSG00000100503|Q8N4C6-11|NIN;REV__nc|ENSG00000100503|Q8N4C6-2|NIN;REV__nc|ENSG00000100503|Q8N4C6-5|NIN;REV__nc|ENSG00000100503|Q8N4C6-9|NIN;REV__nc|ENSG00000100503|Q8N4C6|NIN;REV__NIN|p.E2042K|1|0.16|ENSG00000100503|chr14:50726021-50726021|C/T|missense_variant 12.531546534597751 0.5015908124873912 1 DV{[DS]|[MA]|[CV]|TT}E{M(Oxidation (M))|F}V{[TV]|[{I|L}S]} 9 -1 + 22.546 0 0 2.2335 2.2335 79.751 0 0 0 3.4678748622465605 3.0821375241779982 3.0821375241779982 2.218487496163558 0 0 0 0.3494850021680094 0 DV{[DS]|[MA]|[CV]|TT}E{M(Oxidation (M))|F}V{[TV]|[{I|L}S]};DP[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}V{[TV]|[{I|L}S]};VD{[DS]|[MA]|[CV]|TT}E{M(Oxidation (M))|F}V{[TV]|[{I|L}S]};V[WM]E{M(Oxidation (M))|F}V{[TV]|[{I|L}S]};DV[{M(Oxidation (M))|F}E][RP]T{M(Oxidation (M))|F};DV{[DS]|[MA]|[CV]|TT}EVVT{M(Oxidation (M))|F};VD[{M(Oxidation (M))|F}E][RP]T{M(Oxidation (M))|F};DP[W{M(Oxidation (M))|F}]VVT{M(Oxidation (M))|F};VD{[DS]|[MA]|[CV]|TT}EVVT{M(Oxidation (M))|F} 2.2335;2.0137;1.9353;1.5917;0.60876;0.45188;0.31055;0.23211;0.15367 -;-;-;-;-;-;-;-;- 90 + NaN NaN 113902.4 NaN 6271 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8652 44.5 NaN 53238 35 0 7224 0.261 -1 RYQQWMERF 9 32 453.87995229043463 1358.6180274715039 3 453.8801574707031 MULTI HCD FTMS 0 0 0 8648 17179.439453125 0.39507719343098774 -6 0.17273330688476562 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 3.876331618118854 0.3216315731786804 1 W 1 -1 11.237 0 0 0.8271 0 0 575.2786242506039 594.2345512792277 1169.5131755298316 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.8271 + + 2 + NaN NaN 104384.7 NaN 6272 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8653 44.503 NaN 153920 35 0 14990 0.261 + 1409 AYQKQPTIF 9 36 548.2952525977294 1094.5759522622586 2 548.2954711914062 MULTI HCD FTMS 0 0 0 8648 65473.87109375 0.5985057309225865 -3 0.08696365356445312 5 Unmodified _AYQKQPTIF_ ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 57.72198328787511 0.020768266150574023 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F} 9 0 + 71.048 0 0 6.4909 6.4909 94.174 0 0 0 18.040361322353675 64.05841552005654 18.040361322353675 71.04811556341673 0 2.6677353201839438 2 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F} 6.4909 + + 111 NaN NaN 107688 NaN 6273 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8654 44.506 NaN 93320 35 0 7074.7 0.261 + 25461 SFAVRIDSLAM 11 39 605.3180784281305 1208.621603923061 2 605.3186645507812 MULTI HCD FTMS 0 0 0 8648 25640.255859375 0.1422727550167474 -5 0.1430511474609375 6 Unmodified _SFAVRIDSLAM_ REV__ENSG00000214402|ENST00000408973|LCNL1 9.5439744041441 0.373925449867384 1 KE{I|L}{M(Oxidation (M))|F}M 5 -1 40.349 0 0 3.3385 0 0 542.2958241193375 0 542.2958241193375 0 9.151603310239906 0 0 0 0.2742275032520141 0 0.805462187404089 0 KE{I|L}{M(Oxidation (M))|F}M 3.3385 - 48 NaN NaN 96035.5 NaN 6274 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8655 44.51 NaN 22993 35 0 5071.4 0.261 -1 IYADNQVMHF 10 15 627.2847556735803 1252.5549584139605 2 627.2849731445312 MULTI HCD FTMS 0 0 0 8648 11473.2998046875 0.15479757281323142 6 -0.16666793823242188 7 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 3.2813086475875832 0.45793521633868084 1 [Y{I|L}]W 3 -1 10.458 0 0 0.8349 0 0 0 787.3150118463499 787.3150118463499 10.45757490560675 0 0 0 0 0 0 0 0 [Y{I|L}]W 0.8349 - 1 + NaN NaN 101870.5 NaN 6275 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8656 44.513 NaN 38352 35 0 3867.7 0.261 -1 MEDLVCLLAV 10 23 574.2900270751885 NaN 0 574.29931640625 PEAK HCD FTMS 0 0 0 8648 18231.62109375 1 0 0 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MEDLVCLLAV_ ENST00000409127.1_2_2:131099735-131099786:-|nuORF 4.3292370932331545 0.3364790620948225 1 {I|L}V 2 -1 9.464 0 0 0.82542 0 0 417.1239251447144 514.2635592096311 931.3874843543456 0 0 0 0 0 0 0 0 0 {I|L}V 0.82542 + + 4 + NaN NaN 88904.6 NaN 6276 2378 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8658 44.518 NaN 220840 35 0 57376 0.327 -1 SSGPVDPMM 9 35 468.693569896085 935.3725868589701 2 468.6932373046875 MULTI HCD FTMS 0 0 0 8657 100463.890625 0.7447167148227106 4 -0.09473419189453125 1 Oxidation (M) _SSGPVDPM(Oxidation (M))M_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 4 -1 25.49 0 0 2.7251 0 0 427.2064484174622 0 427.2064484174622 0 10.00508444608478 0 0 0 0.9247425010840047 0 0.3054621874040891 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 2.7251 + + 8 NaN NaN 114445.7 NaN 6277 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8659 44.522 NaN 205180 35 0 14519 0.261 + 18426 MPTTERVTL 9 52 524.2785228474055 1046.542492761611 2 524.2785034179688 MULTI HCD FTMS 0 0 0 8657 132584.0625 0.7649714480544992 -2 0.06375885009765625 2 Unmodified _MPTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 47.594388314883695 0.03493607795751234 1 MPTTE[RV][{I|L}T] 9 0 + 61.705 0 0 5.8961 5.8961 92.828 0 0 0 51.247293946369794 0.20689673945462062 0.20689673945462062 56.282672239435314 0 1.305462187404089 1.3010299956639813 0.8807196863200843 0 + + MPTTE[RV][{I|L}T];[{M(Oxidation (M))|F}V][PS]E[RV][{I|L}T] 5.8961;0.51811 +;- + 55 + NaN NaN 108385.7 NaN 6278 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8660 44.526 NaN 227170 35 0 48942 0.261 + 27528 TAAENEFVT 9 60 491.2305438862112 980.4465348392224 2 491.230712890625 MULTI HCD FTMS 0 0 0 8657 122453.9453125 0.847981024482326 -2 0.06375885009765625 3 Unmodified _TAAENEFVT_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 55.50274090549119 0.023872834264864425 1 {I|L}D[NG]V{M(Oxidation (M))|F} 6 7 32.466 0 0 3.3113 0 0 317.15797390347865 0 317.15797390347865 0 -2.7996322337744317 -2.7996322337744317 0 0 0.8494850021680094 0 0.3807196863200844 0.3252574989159953 {I|L}D[NG]V{M(Oxidation (M))|F} 3.3113 - 287 + NaN NaN 124125.7 NaN 6279 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8661 44.529 NaN 451860 35 0 81614 0.261 + 20569 PEFTDTLAI 9 69 503.75865143768385 1005.5027499421677 2 503.7583312988281 MULTI HCD FTMS 0 0 0 8657 118857.90625 0.8843685719869451 -1 0.029621124267578125 4 Unmodified _PEFTDTLAI_ ENSG00000057468|ENST00000263187|MSH4 25.399314129420986 0.14091189997036632 1 EPE{I|L}H 5 7 50.261 0 0 4.9986 0 0 0 397.19883142642817 397.19883142642817 39.463950151760656 0 0 0 0 0.5 1.3010299956639813 0.3807196863200844 0 EPE{I|L}H 4.9986 - 46 + NaN NaN 152351.7 NaN 6280 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8662 44.533 NaN 137550 35 0 15035 0.261 + 899 AYAPPPHVI 9 40 482.76605122423734 963.5175495152747 2 482.76556396484375 MULTI HCD FTMS 0 0 0 8657 27135.953125 0.10614958862550389 14 -0.3773345947265625 5 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 14.581692164780916 0.23437375358055648 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A 3 6 34.934 0 0 3.6257 0 0 0 655.356770682168 655.356770682168 22.7937748157192 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A 3.6257 + + 19 + NaN NaN 99378.9 NaN 6281 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8663 44.536 NaN 26666 35 0 7494.7 0.261 -1 RYALQMEQL 9 13 584.294840487728 1166.575128042256 2 584.2944946289062 MULTI HCD FTMS 0 0 0 8657 21661.8515625 0.056402713269786436 34 -0.9458541870117188 6 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 3.5964929083625545 0.32375295897743744 1 T{I|L} 2 -1 20.969 0 0 1.7975 0 0 934.4200306623062 0 934.4200306623062 0 13.979400086720375 0 0 0 0 0 0 0 T{I|L} 1.7975 - 3 NaN NaN 88286.4 NaN 6282 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8664 44.539 NaN 50070 35 0 6732.3 0.261 + 24536 RYLEQLHQL 9 22 600.3302654614056 1198.645977989611 2 600.3289794921875 MULTI HCD FTMS 0 0 0 8657 21147.62890625 0.022663769958108853 46 -1.2788352966308594 7 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 4.897010918128616 0.31389406404703984 1 {I|L}HQ{I|L} 4 5 29.553 0 0 2.4655 0 0 689.34965712715 0 689.34965712715 0 29.552593986562812 0 0 0 0 0 0 0 + {I|L}HQ{I|L} 2.4655 + + 11 NaN NaN 85063.8 NaN 6283 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8665 44.542 NaN 20338 35 0 4371.3 0.261 -1 LYHQVRCMM 9 18 627.2830200195312 NaN 0 627.2830200195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _LYHQVRC(Carbamidomethyl (C))M(Oxidation (M))M_ ENSG00000110060|ENST00000227474|PUS3 2.0597508629832335 0.2852655770354268 1 C 1 -1 4.6041 0 0 0.36758 0 0 960.0337906720719 186.49140344791252 1146.5251941199845 0 0 0 0 0 0 0 0 0 C 0.36758 + + 1 + NaN NaN 83831.1 NaN 6284 2379 8657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8667 44.547 NaN 1514900 35 0 241160 0.327 + 20581 PEICLAEFTD 10 90 569.2596017537601 NaN 0 569.2733764648438 PEAK HCD FTMS 0 0 0 8666 7454.580078125 0.7273578081989203 -1 0.0294342041015625 1 Unmodified _PEICLAEFTD_ REV__ENSG00000103363|ENST00000409906|ELOB;REV__nc|ENSG00000103363|Q15370-2|ELOB 19.256988751693697 0.2866536677172102 1 EPE{I|L}H 5 -1 22.466 0 0 1.9767 0 0 130.9995737429785 397.19870935611567 528.1982830990942 0 0 0 0 0 0 0 0.5554621874040891 0 EPE{I|L}H 1.9767 - 2350 + NaN NaN 318271 NaN 6285 2380 8666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8668 44.552 NaN 543620 35 0 157140 0.264 + -1 LRQRKDKMR 9 62 416.2435305890866 1245.70876236746 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8666 206805.328125 0.37542104436702545 25 -0.6774101257324219 2 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 6.630372943996041 0.3007538891620783 1 {I|L}R 2 -1 23.711 0 0 1.9034 0 0 0 973.5014269424969 973.5014269424969 9.731975075880328 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.9034 + + 27 + NaN NaN 163612.5 NaN 6286 2380 8666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8669 44.555 NaN 43327 35 0 15345 0.261 + 24171 RYFDPANGKF 10 16 607.801264180245 1213.5879754272898 2 607.801025390625 MULTI HCD FTMS 0 0 0 8666 31800.771484375 0.05050941437204165 43 -1.2000885009765625 3 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 9.5439744041441 0.42184090036563754 1 NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4 6 16.198 0 0 1.3347 0 0 749.3480091779312 0 749.3480091779312 0 6.505149978319906 0 0 0 0 0 0 0 + NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.3347 + + 7 NaN NaN 103693.5 NaN 6287 2380 8666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8670 44.559 NaN 95737 35 0 10830 0.262 -1 LPSNDPVVM 9 41 494.2439382234803 NaN 0 494.2442321777344 PEAK HCD FTMS 0 0 0 8666 27220.953125 0.7565114919537597 3 -0.06529998779296875 4 Oxidation (M) _LPSNDPVVM(Oxidation (M))_ ENSG00000198793|ENST00000361445|MTOR 13.90604991867851 0.22786006501039813 1 V 1 -1 16.237 0 0 1.646 0 0 165.0450178111716 719.3371008747604 884.382118685932 0 0 0 0 0 0.9247425010840047 0 0 0 V 1.646 + + 22 + NaN NaN 94235.9 NaN 6288 2380 8666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8672 44.564 NaN 2281600 35 0 168410 0.327 + 1573 AYVHMVTHF 9 101 552.7683154465186 1103.5220779598371 2 552.7681884765625 MULTI HCD FTMS 0 0 0 8671 1428174.875 0.8758657544386637 2 -0.049041748046875 1 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 1 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 103.81 0 0 9.4072 9.4072 94.353 0 0 0 39.64882388560649 24.16895006820745 24.16895006820745 10.021147592012184 0 2.6677353201839438 2 0.8539171939081174 0 + + AYVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};[HV]M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHM[H{I|L}]S{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{[WN]|[YH]}V{[ES]|[DT]|[{I|L}C]};[HV]MTHV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WN]|[YH]}H{[ES]|[DT]|[{I|L}C]}V;[HV]TMHV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMR[QT]V 9.4072;8.4991;8.0479;5.5618;5.5118;4.7935;4.6764;4.6582;4.4754;4.3046 +;+;-;-;-;-;-;-;-;- + 3963 + NaN NaN 438205.2 NaN 6289 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8673 44.568 NaN 1459800 35 0 233340 0.261 + 6789 FPRHIEPEL 9 88 569.3058520636341 1136.5971511940681 2 569.3058471679688 MULTI HCD FTMS 0 0 0 8671 459807.21875 0.9229863952350421 1 -0.039432525634765625 2 Unmodified _FPRHIEPEL_ ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B 65.47368725323818 0.010552856507075443 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}EPE{I|L} 9 0 + 62.62 0 0 5.5095 5.5095 82.663 0 0 0 0.9990124077465055 2.2184874961635614 0.9990124077465055 0.9990124077465055 0 1.8441876774005248 0.958607314841775 0.7302046884880937 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}EPE{I|L};[EP]{I|L}[TP]{I|L}EPE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}EP{I|L}E;[EP]{I|L}[TP]{I|L}EP{I|L}E;[EP]{I|L}[TP]{I|L}E{I|L}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}E{I|L}PE;{I|L}{M(Oxidation (M))|F}PE[RH]{I|L}PE;[EP]{I|L}[RH]{M(Oxidation (M))|F}PE{I|L};[EP]{I|L}[RH]{M(Oxidation (M))|F}P{I|L}E;{M(Oxidation (M))|F}{I|L}PE[RH]{I|L}[EP] 5.5095;5.4216;5.3143;5.2264;4.8151;4.429;4.2761;4.1382;3.943;3.9008 +;-;-;-;-;-;-;-;-;- + 2340 NaN NaN 308462.6 NaN 6290 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8674 44.572 NaN 428800 35 0 85699 0.263 -1 0 60 435.71784279295935 869.4211326527187 2 435.7178039550781 MULTI HCD FTMS 0 0 0 8671 151290.796875 0.8588933181127858 1 -0.039432525634765625 3 NaN NaN 1 [HV]MVTH{M(Oxidation (M))|F} 7 -1 + 74.602 0 0 8.5806 8.5806 87.704 0 0 0 0.4980376447570478 0.4980376447570478 0.4980376447570478 0.4980376447570478 0 1.7614393726401687 1.3979400086720375 0.7302046884880937 0 [HV]MVTH{M(Oxidation (M))|F};VHMVTH{M(Oxidation (M))|F};[HV]MTVH{M(Oxidation (M))|F};[HK]{NN|[MP]|[D{I|L}]|[EV]}[NP]{M(Oxidation (M))|F} 8.5806;8.5233;8.4889;0.16604 -;-;-;- 195 NaN NaN 153303.8 NaN 6291 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8675 44.575 NaN 267160 35 0 31086 0.261 + 12480 KQYADVEGF 9 57 528.7532954358378 NaN 0 528.7532348632812 PEAK HCD FTMS 0 0 0 8671 168131.390625 0.24886672805145962 7 -0.1999664306640625 4 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 61.60191391372663 0.022376469204184533 1 YADVEG 6 3 53.779 0 0 5.0952 0 0 256.1526751436564 162.0561464899047 418.2088216335611 0 0 0 0 0 2.6747425010840047 0 0.7302046884880937 0 + YADVEG 5.0952 + + 83 + NaN NaN 125378.7 NaN 6292 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8676 44.578 NaN 169130 35 0 18998 0.261 + 9129 HPHDLVILM 9 51 545.7892768338711 1089.564000734542 2 545.7890014648438 MULTI HCD FTMS 0 0 0 8671 78074.2890625 0.2821889370628454 6 -0.17027664184570312 5 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 63.562846038646086 0.012597299157545023 1 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 8 5 50.303 0 0 4.6168 0 0 183.0600467323921 0 183.0600467323921 0 28.87640052032225 0 0 0 1.5 0 0 0 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 4.6168 - 173 + NaN NaN 104638.8 NaN 6293 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8677 44.582 NaN 280640 35 0 42243 0.261 -1 RYLSPKYIKMF 11 56 487.93555575279356 1460.7848378585807 3 487.93524169921875 MULTI HCD FTMS 0 0 0 8671 102205.9296875 0.32079151085663843 25 -0.6907920837402344 6 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 30.354368406336206 0.19907096413251338 1 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 21.911 0 0 1.5 0 0 744.4281652478818 0 744.4281652478818 0 14.910613043861279 0 0 0 1.3494850021680094 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.5 + + 69 + NaN NaN 127587.4 NaN 6294 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8678 44.585 NaN 166800 35 0 27529 0.261 -1 LYNRTMVQL 9 49 577.3050412553038 1152.5955295774074 2 577.3052978515625 MULTI HCD FTMS 0 0 0 8671 94939.9296875 1 0 0 7 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 31.26834338654808 0.10542797264966089 1 [Y{I|L}][RN][{M(Oxidation (M))|F}T]VQ{I|L} 9 -1 + 43.368 0 0 3.7626 3.7626 87.401 0 0 0 5.620149727660291 39.87265918458512 5.620149727660291 18.89629299386655 0 1.1549471895720984 1.5228787452803376 0 0.4247425010840047 [Y{I|L}][RN][{M(Oxidation (M))|F}T]VQ{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YR][{M(Oxidation (M))|F}T]VQ{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}E][YK]VQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V[{M(Oxidation (M))|F}T]{[MG]|[TS]}VQ{I|L} 3.7626;2.1231;1.8039;0.48761 +;-;-;- + 47 NaN NaN 119990.4 NaN 6295 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8679 44.588 NaN 158400 35 0 11406 0.261 + 7138 FSDGWIWLP 9 66 560.7764776559424 1119.5384023786846 2 560.7654418945312 MULTI HCD FTMS 0 0 0 8671 39224.24609375 0.6968366453071748 7 -0.1999664306640625 8 Unmodified _FSDGWIWLP_ REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF 7.910154910731844 0.2910521888787154 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}HH[{I|L}P] 9 -1 + 31.901 0 0 2.8495 2.8495 82.063 0 0 0 16.4435694977913 1.979619346030649 1.979619346030649 6.856281995293401 0 0.5 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}HH[{I|L}P];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHW{[NV]|[RG]}[MT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R][PA]{[{M(Oxidation (M))|F}H]|[RQ]} 2.8495;2.2371;1.4396 -;-;- 495 + NaN NaN 107376.5 NaN 6296 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8680 44.592 NaN 266920 35 0 51235 0.261 + 7188 FSLFDATLQ 9 44 521.2681937672111 NaN 0 521.267822265625 PEAK HCD FTMS 0 0 0 8671 35943.921875 0.7673859847314137 2 -0.049041748046875 9 Unmodified _FSLFDATLQ_ ENSG00000119684|ENST00000355774|MLH3;MLH3|p.N369S|1|0.2|ENSG00000119684|chr14:75048550-75048550|T/C|missense_variant;nc|ENSG00000119684|Q9UHC1-2|MLH3 17.11289562659939 0.20677709319598864 1 CS 2 8 15.217 0 0 1.4624 0 0 131.1227360343309 716.3370889072855 847.4598249416165 0 0 0 0 0 0 0 0.4247425010840047 0 CS 1.4624 - 46 + NaN NaN 126022.6 NaN 6297 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8681 44.595 NaN 63603 35 0 8614.6 0.261 + 13088 KYLEKYYNL 9 26 617.3293890676291 1232.6442252020581 2 617.329345703125 MULTI HCD FTMS 0 0 0 8671 45675.6171875 0.7997108090882437 -2 0.04569244384765625 10 Unmodified _KYLEKYYNL_ ENSG00000196611|ENST00000315274|MMP1 12.872603262515298 0.2491399024913319 1 KY{I|L}E 4 5 34.825 0 0 2.8253 0 0 0 696.3383883111936 696.3383883111936 27.8357551167653 0 0 0 0 0.28872548999643577 0 0 0 + KY{I|L}E 2.8253 + + 9 + NaN NaN 96150.6 NaN 6298 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8682 44.598 NaN 146170 35 0 17101 0.262 + 29711 VDERYDDL 8 52 512.7326878923853 1023.4508228515707 2 512.7321166992188 MULTI HCD FTMS 0 0 0 8671 39261.99609375 0.02515644238247782 60 -1.6946296691894531 11 Unmodified _VDERYDDL_ REV__ENST00000401578.2_1_6:80777029-80777566:-|nuORF 6.723162845929126 0.5320176132289695 1 {I|L}D{I|L} 3 -1 22.92 0 0 2.2394 0 0 664.2441273419937 0 664.2441273419937 0 10.088643834802156 0 0 0 0.4247425010840047 0 0 0 {I|L}D{I|L} 2.2394 - 24 NaN NaN 112080.7 NaN 6299 2381 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8684 44.603 NaN 540250 35 0 144860 0.327 -1 ERGKMEYVF 9 45 587.7828807407207 1173.5512085482412 2 587.763427734375 MULTI HCD FTMS 0 0 0 8683 17225.744140625 0.5230996848797437 -1 0.039432525634765625 1 Oxidation (M) _ERGKM(Oxidation (M))EYVF_ ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF 14.405379775768559 0.2358970535022398 1 TP[HA]{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 9 -1 47.585 0 0 4.0548 0 0 64.0431717967784 0 64.0431717967784 0 19.16895006820745 0 0 0 0 0 0.7742275032520141 0 TP[HA]{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 4.0548 - 213 + NaN NaN 169866.1 NaN 6300 2382 8683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8685 44.608 NaN 96037 35 0 8969.6 0.261 -1 YPESESIMM 9 43 559.7224920098566 1117.4304310865132 2 559.722412109375 MULTI HCD FTMS 0 0 0 8683 17691.203125 0.12484371614584913 31 -0.8607292175292969 2 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.11819662193267319 1 R{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 40.585 0 0 3.632 0 0 449.13020522285314 0 449.13020522285314 0 30.127881306118454 0 0 0 1.3807196863200843 0 0.805462187404089 0 R{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.632 - 130 NaN NaN 100913.7 NaN 6301 2382 8683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8687 44.613 NaN 133740 35 0 11833 0.327 + 30536 VMSQALKATF 10 41 556.2940757611307 1110.5735985890612 2 556.2936401367188 MULTI HCD FTMS 0 0 0 8686 103410.921875 0.29761386341283014 15 -0.4244384765625 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 66.68293810318366 0.021515761494065467 1 [{M(Oxidation (M))|F}V]{[QS]|[NT]}A{I|L}KAT{M(Oxidation (M))|F} 10 0 + 73.237 0 0 6.5945 6.5945 86.712 0 0 0 8.353481135844874 50.305168975722765 8.353481135844874 5.573193899842437 0 3.3494850021680094 0 1.0356668758921828 0 + + [{M(Oxidation (M))|F}V]{[QS]|[NT]}A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[QS]|[NT]}{I|L}AKAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[QS]|[NT]}A{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[QS]|[NT]}{I|L}A[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[QS]|[NT]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}K{M(Oxidation (M))|F} 6.5945;6.0927;4.2791;3.7773;2.4242 +;-;-;-;- + 253 NaN NaN 102220.3 NaN 6302 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8688 44.617 NaN 245260 35 0 22203 0.261 + 16197 LPVNDEHVTV 10 57 561.7928087079148 1121.5710644826295 2 561.7926025390625 MULTI HCD FTMS 0 0 0 8686 71988.96875 0.22840453230376906 -2 0.049041748046875 2 Unmodified _LPVNDEHVTV_ ENSG00000145386|ENST00000274026|CCNA2 88.36371040165146 0.001128003270081954 1 {I|L}PVNDEHVTV 10 0 + 70.469 0 0 6.2831 6.2831 89.889 0 0 0 29.283343794609138 16.249387366083 16.249387366083 11.906814518019395 0 2.473197507588033 0 1.360924374808178 0.2742275032520141 + + {I|L}PVNDEHVTV;{I|L}PVGGDEHVTV;V[{I|L}P]NDEHVTV 6.2831;5.2214;3.955 +;-;- + 165 + NaN NaN 130393.6 NaN 6303 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8689 44.621 NaN 184350 35 0 20439 0.262 -1 0 47 471.3540289887893 470.3467525221893 1 471.3532409667969 MULTI HCD FTMS 0 0 0 8686 68526.890625 0.21613989605897593 34 -0.9632720947265625 3 NaN NaN 1 {I|L}{I|L}{I|L}{I|L} 4 -1 + 25.199 0 0 5.3576 5.3576 90.45 0 0 0 22.100278688931105 5.858317385287872 5.858317385287872 25.199222480373074 0 0.5021934810768762 0 0 0 {I|L}{I|L}{I|L}{I|L} 5.3576 - 7 + NaN NaN 110903.5 NaN 6304 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8690 44.624 NaN 146670 35 0 15638 0.261 + 9805 HYMSINDSF 9 37 565.2343671467892 1128.4541813603782 2 565.23388671875 MULTI HCD FTMS 0 0 0 8686 57721.12109375 0.6340945989426298 4 -0.12123489379882812 4 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 51.629811660486645 0.02929079705179888 1 NDS{M(Oxidation (M))|F} 4 5 53.245 0 0 4.7184 0 0 647.2732199129804 0 647.2732199129804 0 47.53205960551831 0 0 0 1.4247425010840047 0 0.3252574989159953 0.3807196863200844 + NDS{M(Oxidation (M))|F} 4.7184 + + 37 NaN NaN 99608.4 NaN 6305 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8691 44.627 NaN 194020 35 0 31024 0.261 + -1 HHFLPMLL 8 42 512.2769762268405 1022.539399520481 2 512.2769775390625 MULTI HCD FTMS 0 0 0 8686 63826.4921875 0.45820821087494434 -2 0.049041748046875 5 Oxidation (M) _HHFLPM(Oxidation (M))LL_ REV__ENST00000539107.5_2_12:28343406-28458716:+|nuORF;REV__ENST00000545737.5_1_12:28410092-28458713:+|nuORF 17.086550045450526 0.4680768486079041 1 Q{I|L}{I|L} 3 -1 33.188 0 0 3.2456 0 0 650.3010121076187 0 650.3010121076187 0 27.703037561203843 0 0 0 0.5 0 0 0.3494850021680094 Q{I|L}{I|L} 3.2456 - 16 NaN NaN 118384.5 NaN 6306 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8692 44.63 NaN 104130 35 0 18336 0.261 + 26701 SYASLQQNKW 10 33 612.8038425632026 1223.593132193205 2 612.8034057617188 MULTI HCD FTMS 0 0 0 8686 21211.78125 0.5447776908865729 1 -0.0423126220703125 6 Unmodified _SYASLQQNKW_ ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 4.897010918128616 0.4493830473644964 1 A[MT] 3 9 7.4473 0 0 0.60864 0 0 902.4663563459 0 902.4663563459 0 -3.0102999566398125 -3.0102999566398125 0 0 0 0 0 0 A[MT] 0.60864 - 2 NaN NaN 102281.6 NaN 6307 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8693 44.634 NaN 114100 35 0 8197.9 0.261 + 1505 AYVELVHHI 9 43 540.7953029050772 1079.5760528769542 2 540.794921875 MULTI HCD FTMS 0 0 0 8686 31721.61328125 0.6486174792223522 -1 0.009609222412109375 7 Unmodified _AYVELVHHI_ ENSG00000101391|ENST00000346416|CDK5RAP1;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 70.71552829651908 0.008856681705782516 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}VH[H{I|L}] 9 0 + 81.22 0 0 7.5234 7.5234 95.764 0 0 0 76.15865011156764 4.137342758552691 4.137342758552691 57.412581433031846 0 2.1549471895720984 2 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}VH[H{I|L}];{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}V]TVH[H{I|L}];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH[H{I|L}] 7.5234;2.2053;1.6724 +;-;- + 76 + NaN NaN 108791.9 NaN 6308 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8694 44.637 NaN 27187 35 0 6655.1 0.261 + 20165 NYKKFYEQF 9 21 633.8114714375128 1265.6083899418254 2 633.8102416992188 MULTI HCD FTMS 0 0 0 8686 38523.30859375 0.10676821134867388 20 -0.55609130859375 8 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 6.630372943996041 0.3007538891620783 1 [YN]K 3 6 30.458 0 0 2.4066 0 0 0 857.3861178033811 857.3861178033811 30.457574905606748 0 0 0 0 0 2 0 0 + [YN]K 2.4066 + + 4 + NaN NaN 78324.6 NaN 6309 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8695 44.647 NaN 56525 35 0 13275 0.261 -1 RYKLYQEMF 9 25 647.3183876650669 1292.6222223969337 2 647.317626953125 MULTI HCD FTMS 0 0 0 8686 37828.921875 0.34048740286433743 17 -0.4704132080078125 9 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 9.38312468134398 0.279288223203164 1 {I|L}YQE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 23.645 0 0 1.8292 0 0 447.258104392775 0 447.258104392775 0 23.645162531850872 0 0 0 0 0 0 0 {I|L}YQE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.8292 + + 26 NaN NaN 96643.7 NaN 6310 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8696 44.65 NaN 77144 35 0 12553 0.261 + -1 MMCFPTGRVM 10 34 594.7525638545455 NaN 0 594.7522583007812 PEAK HCD FTMS 0 0 0 8686 29729.306640625 1 0 0 10 Oxidation (M) _MMCFPTGRVM(Oxidation (M))_ REV__ENSG00000101890|ENST00000218006|GUCY2F 8.155526934196011 0.33320428830121973 1 V 1 -1 11.237 0 0 0.94629 0 0 165.04780204700995 920.3496187799436 1085.3974208269535 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.94629 + + 2 + NaN NaN 105506.1 NaN 6311 2383 8686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8698 44.655 NaN 593640 35 0 46637 0.326 + 24487 RYLEGTSCI 9 72 521.2551746038419 1040.4957962744836 2 521.2545776367188 MULTI HCD FTMS 0 0 0 8697 268080.21875 0.3471935397939333 -5 0.13704681396484375 1 Unmodified _RYLEGTSCI_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 74.19965305603844 0.007729275404663812 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC{I|L} 10 3 + 88.862 0 0 8.5403 8.5403 90.848 0 0 0 10.594311641220742 16.53212513775344 10.594311641220742 7.737190586435361 0 1.5356668758921828 1.6989700043360187 1.110924374808178 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGEVVC{I|L};[YR]{I|L}EGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGE{I|L}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGC{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]TSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEC(Carbamidomethyl (C)){[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]C{[MG]|[TS]}{I|L};[YR]{I|L}EGC{[MG]|[TS]}{I|L};[YR]{I|L}EC(Carbamidomethyl (C)){[MG]|[TS]}{I|L} 8.5403;7.7967;7.5221;7.4748;6.3397;6.1119;5.6653;4.7577;3.7703;3.1012 -;-;+;-;-;-;-;-;-;- + 1026 NaN NaN 175193.9 NaN 6312 2384 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8699 44.659 NaN 183110 35 0 14116 0.261 + 14516 LFDHAVSKF 9 53 532.2822458040464 1062.5499386748927 2 532.2822875976562 MULTI HCD FTMS 0 0 0 8697 84478.28125 1 0 0 2 Unmodified _LFDHAVSKF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 42.312485326615175 0.05472917415473307 1 VSK{M(Oxidation (M))|F} 4 5 45.477 0 0 4.28 0 0 583.2774525373062 0 583.2774525373062 0 26.792972196075127 0 0 0 1.2302046884880937 0 0.4247425010840047 0 + VSK{M(Oxidation (M))|F} 4.28 + + 67 NaN NaN 126533.9 NaN 6313 2384 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8700 44.663 NaN 104570 35 0 9213.8 0.261 + 1410 AYQKQPTIF 9 39 548.2952525977294 1094.5759522622586 2 548.294921875 MULTI HCD FTMS 0 0 0 8697 66054.78125 0.6038159111801267 3 -0.07892227172851562 3 Unmodified _AYQKQPTIF_ ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 57.72198328787511 0.020768266150574023 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F} 9 0 + 59.828 0 0 5.4659 5.4659 92.119 0 0 0 20.202264589233394 48.591212212983805 20.202264589233394 59.82833726718404 0 2.1989700043360187 1.6989700043360187 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F} 5.4659 + + 112 NaN NaN 95170.1 NaN 6314 2384 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8701 44.666 NaN 194770 35 0 11107 0.261 -1 SASGDEMVSL 10 69 506.2182486944652 1010.4219444557305 2 506.2179260253906 MULTI HCD FTMS 0 0 0 8697 53202.05078125 1 0 0 4 Oxidation (M) _SASGDEM(Oxidation (M))VSL_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 39.94969957227396 0.1458432724694501 1 E{M(Oxidation (M))|F}VS{I|L} 5 -1 41.063 0 0 4.0639 0 0 417.14705092597814 0 417.14705092597814 0 12.0217596488785 0 0 0 1.066901560044258 0 0.7742275032520141 0 E{M(Oxidation (M))|F}VS{I|L} 4.0639 + + 159 NaN NaN 117718.5 NaN 6315 2384 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8702 44.67 NaN 76848 35 0 8841 0.261 + 24636 RYLQKIEEF 9 41 613.3322049231297 1224.6498569130592 2 613.3316650390625 MULTI HCD FTMS 0 0 0 8697 7012.67138671875 0.12038227378130512 4 -0.108612060546875 5 Unmodified _RYLQKIEEF_ ENSG00000026559|ENST00000371571|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant;nc|ENSG00000026559|Q9UIX4-2|KCNG1 1.844237919475145 0.33703635659052655 1 T 1 9 0.9691 0 0 0.079133 0 0 685.8594038874718 434.72080408267817 1120.58020797015 0 0 0 0 0 0 0 0 0 T 0.079133 - 1 + NaN NaN 84671.2 NaN 6316 2384 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8703 44.673 NaN 93546 35 0 9267 0.264 + 6929 FPVKDASL 8 54 438.7444855454199 875.4744181576398 2 438.74456787109375 MULTI HCD FTMS 0 0 0 8697 31826.37890625 0.8594382691052227 -2 0.051921844482421875 6 Unmodified _FPVKDASL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 13.90604991867851 0.4914777452512057 1 VPE 3 7 27.435 0 0 3.1337 0 0 532.2855702130875 0 532.2855702130875 0 14.670802793795268 0 0 0 0.4247425010840047 0 0 0 VPE 3.1337 - 10 NaN NaN 92373.3 NaN 6317 2384 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8705 44.678 NaN 160340 35 0 11053 0.327 + 23672 RQEYLKLEM 9 51 605.3180784281305 1208.621603923061 2 605.31787109375 MULTI HCD FTMS 0 0 0 8704 119716.875 0.6642854783376858 2 -0.05600738525390625 1 Unmodified _RQEYLKLEM_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 14.838274106304384 0.23215694253501695 1 N{I|L}KE{I|L}{M(Oxidation (M))|F}M 7 6 51.433 0 0 4.2555 0 0 315.1688709943375 0 315.1688709943375 0 20.234644870858602 0 0 0 0.3252574989159953 0 0.8494850021680094 0 N{I|L}KE{I|L}{M(Oxidation (M))|F}M 4.2555 - 151 NaN NaN 121243.8 NaN 6318 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8706 44.682 NaN 345460 35 0 79370 0.262 + 20570 PEFTDTLAI 9 53 503.75865143768385 1005.5027499421677 2 503.75860595703125 MULTI HCD FTMS 0 0 0 8704 53627.6328125 0.39901925371019115 5 -0.14509201049804688 2 Unmodified _PEFTDTLAI_ ENSG00000057468|ENST00000263187|MSH4 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F}[HA] 3 7 18.952 0 0 1.8849 0 0 632.3401631984462 0 632.3401631984462 0 4.348331157524971 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}[HA] 1.8849 - 19 NaN NaN 129587.5 NaN 6319 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8707 44.686 NaN 168820 35 0 11226 0.261 + 2666 DVFYPGTGR 9 56 506.24902701658954 1010.4835010999791 2 506.24835205078125 MULTI HCD FTMS 0 0 0 8704 49583.91796875 0.9182913818019558 1 -0.026275634765625 3 Unmodified _DVFYPGTGR_ ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-6|NFIX 12.240655878213236 0.2545997876781172 1 [DV]{M(Oxidation (M))|F}Y 4 5 38.729 0 0 3.8327 0 0 0 483.232699541045 483.232699541045 23.51219677964764 0 0 0 0 0.7302046884880937 1.5228787452803376 0 0 + [DV]{M(Oxidation (M))|F}Y 3.8327 + + 67 + NaN NaN 109372.7 NaN 6320 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8708 44.689 NaN 119220 35 0 16381 0.261 -1 FCAIPQVM 8 38 491.2305438862112 980.4465348392224 2 491.2305603027344 MULTI HCD FTMS 0 0 0 8704 45136.32421875 0.31256442048237537 4 -0.11878585815429688 4 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))AIPQVM(Oxidation (M))_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 10.183394434864962 0.5188676124868831 1 V[NG]D{I|L}[TP]T 8 -1 38.192 0 0 3.8954 0 0 165.04579360175939 0 165.04579360175939 0 31.202519733105163 0 0 0 1.3494850021680094 0 0.4247425010840047 0.3494850021680094 V[NG]D{I|L}[TP]T 3.8954 - 47 NaN NaN 100525.5 NaN 6321 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8709 44.693 NaN 52033 35 0 5084.5 0.261 + 18427 MPTTERVTL 9 31 524.2785228474055 1046.542492761611 2 524.278076171875 MULTI HCD FTMS 0 0 0 8704 26142.291015625 0.15083340966177425 4 -0.11878585815429688 5 Unmodified _MPTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 4.897010918128616 0.31389406404703984 1 MPTT 4 5 31.938 0 0 3.0518 0 0 0 613.3321627252561 613.3321627252561 31.938200260161125 0 0 0 0 0 0 0 0 + MPTT 3.0518 + + 10 + NaN NaN 91027.5 NaN 6322 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8710 44.696 NaN 56624 35 0 7043.9 0.261 -1 RYQQWMERF 9 44 453.87995229043463 1358.6180274715039 3 453.8794860839844 MULTI HCD FTMS 0 0 0 8704 26770.453125 0.6156426416798443 1 -0.026275634765625 6 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 7.101721422024254 0.29718071671418667 1 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.439543440057 0 1037.439543440057 0 17.95880017344075 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 7 + NaN NaN 111374.8 NaN 6323 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8711 44.699 NaN 42174 35 0 6159 0.261 + 18975 NAPEFVQAL 9 31 494.75838848793177 987.5022240426636 2 494.7579650878906 MULTI HCD FTMS 0 0 0 8704 7538.72119140625 0.00689941769781762 40 -1.1188735961914062 7 Unmodified _NAPEFVQAL_ ENSG00000113248|ENST00000231173|PCDHB15;PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant 3.2813086475875832 0.32614229037259 1 A{I|L} 2 7 16.454 0 0 1.6662 0 0 785.3701039044937 0 785.3701039044937 0 1.7609125905568135 0 0 0 0 0 0 0 + A{I|L} 1.6662 + + 8 NaN NaN 92000.9 NaN 6324 2385 8704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8713 44.704 NaN 757250 35 0 56041 0.327 + 1574 AYVHMVTHF 9 89 552.7683154465186 1103.5220779598371 2 552.7680053710938 MULTI HCD FTMS 0 0 0 8712 357458.15625 0.21922060329212834 7 -0.19109725952148438 1 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 1 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 100.77 0 0 9.1319 9.1319 94.612 0 0 0 48.62756757724155 24.14172671213214 24.14172671213214 11.989700043360187 0 2.6677353201839438 1.6989700043360187 0.5501648626366046 0 + + AYVHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WN]|[YH]}HVC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WN]|[YH]}A[HM]{I|L};{M(Oxidation (M))|F}SVH{[WN]|[YH]}VC{I|L};[HV]M[YG]{I|L}TH{M(Oxidation (M))|F};[HM]V[YG]{I|L}TH{M(Oxidation (M))|F};[HV]TM{M(Oxidation (M))|F}[VS]H{M(Oxidation (M))|F};[HV]MT{M(Oxidation (M))|F}[VS]H{M(Oxidation (M))|F} 9.1319;8.0454;8.0091;5.377;4.0743;3.8717;3.208;2.9353;2.3696;2.2978 +;-;+;-;-;-;-;-;-;- + 974 + NaN NaN 201886.9 NaN 6325 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8714 44.709 NaN 891220 35 0 126220 0.261 -1 HPFFKDMSL 9 83 569.2734612342365 1136.532369535273 2 569.2730102539062 MULTI HCD FTMS 0 0 0 8712 266083.21875 0.6250552771875671 5 -0.13834762573242188 2 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 28.494509381512117 0.11816142465008336 1 [EP]{I|L}[TP]{I|L}EPE 9 -1 32.175 0 0 2.831 0 0 0 128.0047554014798 128.0047554014798 0.007718356501563051 0 0 0 0 0 1.5228787452803376 0 0 [EP]{I|L}[TP]{I|L}EPE 2.831 - 1113 NaN NaN 236820.7 NaN 6326 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8715 44.712 NaN 453740 35 0 120100 0.264 + -1 LRQRKDKMR 9 64 416.2435305890866 1245.70876236746 3 416.2432556152344 MULTI HCD FTMS 0 0 0 8712 154087.421875 0.2797203600536341 31 -0.8717689514160156 3 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 6.630372943996041 0.3007538891620783 1 {I|L}R 2 -1 22.831 0 0 1.8328 0 0 0 973.4987248428757 973.4987248428757 7.614393726401687 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.8328 + + 45 + NaN NaN 143818.1 NaN 6327 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8716 44.716 NaN 295300 35 0 40186 0.261 + 18420 MPTQEVQEL 9 52 545.7578800773736 1089.501207221547 2 545.7572631835938 MULTI HCD FTMS 0 0 0 8712 119141.359375 0.6157773375793308 -8 0.21585845947265625 4 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 47.594388314883695 0.03493607795751234 1 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L} 9 4 + 55.423 0 0 5.087 5.087 83.754 0 0 0 6.935749724493121 34.62144052772942 6.935749724493121 4.771212547196626 0 1.305462187404089 0 0 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[MD]VQE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L};[VP]{[CA]|SS}[EC]VQE{I|L} 5.087;4.6491;4.6491;4.4455;4.2419;4.2419;4.0076;4.0076;3.8039;3.8039 -;-;-;-;-;-;-;-;-;- 249 NaN NaN 123157.6 NaN 6328 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8717 44.719 NaN 23540 35 0 3280.2 0.263 + 450 ALLTRLLPLRR 11 22 441.29741524798993 NaN 0 441.2970886230469 PEAK HCD FTMS 0 0 0 8712 21753.646484375 0.4237067640278172 50 -1.4088630676269531 5 Unmodified _ALLTRLLPLRR_ nc|ENSG00000167889|Q3V5L5-2|MGAT5B 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80773.8 NaN 6329 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8718 44.722 NaN 173720 35 0 24265 0.261 + -1 DEYGCSMM 8 47 476.1484676504929 950.2823823677858 2 476.1482238769531 MULTI HCD FTMS 0 0 0 8712 40852.89453125 0.5652764353786002 -4 0.10111236572265625 6 Oxidation (M) _DEYGCSM(Oxidation (M))M_ REV__ENSG00000160883|ENST00000292432|HK3 0 0.5419923896992614 1 CPV{I|L} 4 -1 11.172 0 0 1.1757 0 0 520.0629437464952 0 520.0629437464952 0 5.687587626244124 0 0 0 0.25 0 0 0 CPV{I|L} 1.1757 - 28 + NaN NaN 101996.2 NaN 6330 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8719 44.726 NaN 74037 35 0 8901.9 0.261 -1 RAVCCVGF 8 37 456.2150171641859 NaN 0 456.2261962890625 PEAK HCD FTMS 0 0 0 8712 4421.087890625 0.26490598434833756 4 -0.11881637573242188 7 Carbamidomethyl (C) _RAVCC(Carbamidomethyl (C))VGF_ ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF;nc|ENSG00000125746|O95834-2|EML2;nc|ENSG00000125746|O95834-3|EML2;OPA3-EML2|1|fusion 5.760428011301431 0.38822285293237185 1 {M(Oxidation (M))|F}A 2 -1 8.5835 0 0 0.94281 0 0 126.00411772505306 563.2799776666624 689.2840953917155 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A 0.94281 - 8 + NaN NaN 95176.4 NaN 6331 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8720 44.729 NaN 30446 35 0 6189.9 0.261 -1 RYALQMEQL 9 19 584.294645518775 1166.57473810435 2 584.2943115234375 MULTI HCD FTMS 0 0 0 8712 18701.171875 0.5416500918910088 -3 0.09150314331054688 8 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 6.2057823575117 0.30397260197431997 1 Q{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 5 -1 22.218 0 0 1.9046 0 0 503.2855396955094 0 503.2855396955094 0 22.21848749616356 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 1.9046 + + 5 NaN NaN 86278 NaN 6332 2386 8712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8722 44.734 NaN 198220 35 0 16259 0.327 -1 KMPKFKMPSF 10 60 419.55565402834554 1255.6451326852366 3 419.55548095703125 MULTI HCD FTMS 0 0 0 8721 77993.4140625 0.20559637167548914 -22 0.62957763671875 1 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 17.86316937532769 0.34402595751606074 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.6913 0 0 1090.5661817348443 0 1090.5661817348443 0 2.7371905864353607 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 34 + NaN NaN 114481.4 NaN 6333 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8723 44.739 NaN 235970 35 0 28724 0.261 -1 RYLSPKYIKMF 11 55 487.93555575279356 1460.7848378585807 3 487.9352111816406 MULTI HCD FTMS 0 0 0 8721 100502.03125 0.31544352218530464 31 -0.8650970458984375 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 30.354368406336206 0.19907096413251338 1 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 21.712 0 0 1.4863 0 0 744.427673407212 0 744.427673407212 0 15.452986852805534 0 0 0 1.3807196863200843 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.4863 + + 68 + NaN NaN 122279.1 NaN 6334 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8724 44.742 NaN 114740 35 0 12812 0.261 -1 FCAIPQVM 8 51 491.2305438862112 980.4465348392224 2 491.2207336425781 MULTI HCD FTMS 0 0 0 8721 26968.876953125 0.18675670963060648 6 -0.16136550903320312 3 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))AIPQVM(Oxidation (M))_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 14.581692164780916 0.48650662947107914 1 V{I|L}D[NG]V{M(Oxidation (M))|F} 7 -1 40.265 0 0 4.1069 0 0 218.07271010566564 0 218.07271010566564 0 19.29637907846235 0 0 0 0.5 0 0.3807196863200844 0.4247425010840047 V{I|L}D[NG]V{M(Oxidation (M))|F} 4.1069 - 91 NaN NaN 97485.6 NaN 6335 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8725 44.745 NaN 96801 35 0 24936 0.261 -1 LYNRTMVQL 9 37 577.3050412553038 1152.5955295774074 2 577.3048706054688 MULTI HCD FTMS 0 0 0 8721 32464.900390625 0.3419520163695613 6 -0.16136550903320312 4 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 16.149105407346934 0.22083165093524068 1 VQ{I|L} 3 -1 29.693 0 0 2.5762 0 0 794.3759632794937 0 794.3759632794937 0 29.31413403487344 0 0 0 0.3494850021680094 0 0 0 VQ{I|L} 2.5762 + + 7 NaN NaN 97336.2 NaN 6336 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8726 44.749 NaN 42986 35 0 9965.5 0.261 + -1 KYFNKKKMM 9 25 617.3293890676291 1232.6442252020581 2 617.3297729492188 MULTI HCD FTMS 0 0 0 8721 26828.01171875 0.4697178117978867 4 -0.10861587524414062 5 Oxidation (M) _KYFNKKKM(Oxidation (M))M_ REV__ENST00000339728.5_1_2:235403429-235403459:-|nuORF 1.844237919475145 0.33703635659052655 1 KY 2 -1 20.969 0 0 1.7011 0 0 0 938.4690035455686 938.4690035455686 19.3753063169585 0 0 0 0 0 0 0 0 KY 1.7011 + + 2 + NaN NaN 94183.4 NaN 6337 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8727 44.752 NaN 40736 35 0 8713.7 0.264 -1 NAAFPDTSM 9 18 485.20269025487846 968.390827576557 2 485.2023010253906 MULTI HCD FTMS 0 0 0 8721 20602.1640625 0.7196990506772601 1 -0.029689788818359375 6 Oxidation (M) _NAAFPDTSM(Oxidation (M))_ ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F}[HT] 3 -1 15.458 0 0 1.5962 0 0 565.2061789943289 0 565.2061789943289 0 11.962724883926656 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[HT] 1.5962 - 9 + NaN NaN 93980.6 NaN 6338 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8728 44.755 NaN 120560 35 0 9437 0.261 + 19402 NPFTKEAAL 9 47 495.7661993603286 989.5178457874572 2 495.766357421875 MULTI HCD FTMS 0 0 0 8721 43458.375 0.3403341185401687 -4 0.12123489379882812 7 Unmodified _NPFTKEAAL_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2 40.23920728925047 0.06424668180817725 1 NP{M(Oxidation (M))|F}T 4 5 39.68 0 0 4.0101 0 0 0 527.2846163385374 527.2846163385374 12.998037644757048 0 0 0 0 0.7742275032520141 0 0 0 + NP{M(Oxidation (M))|F}T 4.0101 + + 37 + NaN NaN 102575 NaN 6339 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8729 44.759 NaN 39308 35 0 3921.4 0.261 + 32140 VYSKDQLQTF 10 23 614.814730844373 1227.614908755546 2 614.8132934570312 MULTI HCD FTMS 0 0 0 8721 20255.25390625 0.7872400895192598 5 -0.14165496826171875 8 Unmodified _VYSKDQLQTF_ ENSG00000115073|ENST00000289228|ACTR1B;ENSG00000138107|ENST00000369905|ACTR1A;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF;ENST00000480947.1_1_10:104243895-104247966:-|nuORF 4.5288652416199255 0.4513317009562028 1 Q[{M(Oxidation (M))|F}T] 3 7 15.458 0 0 1.2592 0 0 833.4301624982437 0 833.4301624982437 0 15.45757490560675 0 0 0 0.5 0 0 0 + Q[{M(Oxidation (M))|F}T] 1.2592 + + 4 NaN NaN 97618.8 NaN 6340 2387 8721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8731 44.764 NaN 447840 35 0 50131 0.327 + 16198 LPVNDEHVTV 10 73 561.7928087079148 1121.5710644826295 2 561.7926025390625 MULTI HCD FTMS 0 0 0 8730 213757.9375 0.6782050443097338 3 -0.07892608642578125 1 Unmodified _LPVNDEHVTV_ ENSG00000145386|ENST00000274026|CCNA2 117.83759599426817 4.151732338833739E-05 1 [{I|L}P]VNDEHVTV 10 0 + 88.725 0 0 7.9108 7.9108 92.239 0 0 0 18.26844828265172 45.28634875327944 18.26844828265172 9.827796776480469 0 2.5924778212679485 1.3979400086720375 0.7059771852360797 0.28872548999643577 + + [{I|L}P]VNDEHVTV;[{I|L}P]VNDEHVS{I|L};[{I|L}P]VNDEHS{I|L}V;[VP]{I|L}NDEHVTV;[{I|L}P]VND[HD]{I|L}TV;[{I|L}P]VNDEHSV{I|L};[VP]{I|L}NDEHVS{I|L};[{I|L}P]VND[HD]{I|L}S{I|L};[VP]{I|L}NDEHS{I|L}V;[{I|L}P]VND[HD]T{I|L}V 7.9108;7.0345;6.5138;6.0173;5.7273;5.6375;5.141;4.851;4.6202;4.3302 +;-;-;-;-;-;-;-;-;- + 725 NaN NaN 150197.5 NaN 6341 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8732 44.768 NaN 365160 35 0 102670 0.261 -1 RADQFEYVM 9 29 587.7633580190948 1173.5121631049894 2 587.7630615234375 MULTI HCD FTMS 0 0 0 8730 253742.109375 0.5789226185969132 6 -0.16139984130859375 2 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 36.506200033944 0.08138327636155518 1 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5 -1 64.949 0 0 5.5345 0 0 470.22334487129064 0 470.22334487129064 0 60.34440644703906 0 0 0 2.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5.5345 + + 77 NaN NaN 133790.4 NaN 6342 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8733 44.772 NaN 661720 35 0 143690 0.261 + 32743 WQRHGNLL 8 74 512.2769762268405 1022.539399520481 2 512.7924194335938 MULTI HCD FTMS 0 0 0 8730 46180.6015625 0.6964881244703685 4 -0.11196517944335938 3 Unmodified _WQRHGNLL_ ENSG00000183665|ENST00000328599|TRMT12 19.438996006549623 0.45076845602799126 1 [PS]RPGT{I|L}PS 9 6 37.603 0 0 3.6774 0 0 0 127.0377634807435 127.0377634807435 17.59758745913772 0 0 0 0 0.15494718957209852 1.5228787452803376 0 0.4247425010840047 [PS]RPGT{I|L}PS 3.6774 - 473 NaN NaN 177398.5 NaN 6343 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8734 44.775 NaN 487260 35 0 83487 0.261 + 1080 AYIERMNYI 9 65 594.789514604951 1187.564476276702 2 594.7890014648438 MULTI HCD FTMS 0 0 0 8730 206518.34375 0.7050498873439317 -3 0.08569717407226562 4 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 72.96794272382148 0.008127836904478181 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 88.867 0 0 7.4831 7.4831 88.643 0 0 0 23.149575422761828 16.478174818886373 16.478174818886373 6.42667503568731 0 2 1.6989700043360187 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERS{[CA]|SS}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YT]GREC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}E{I|L}C{I|L} 7.4831;6.9419;6.7077;6.7077;5.5338;5.492;5.4097;5.406;5.2578;5.2422 +;-;-;-;-;-;-;-;-;- + 295 NaN NaN 155388.1 NaN 6344 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8735 44.778 NaN 199300 35 0 77109 0.263 + 9282 HPNEGALVL 9 30 475.2584688082251 948.5023846832502 2 475.25811767578125 MULTI HCD FTMS 0 0 0 8730 84745.3515625 0.7909348556358986 -3 0.08569717407226562 5 Unmodified _HPNEGALVL_ ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 17.11289562659939 0.2125047172822487 1 {I|L}V{I|L} 3 6 35.445 0 0 3.737 0 0 605.2552357404312 0 605.2552357404312 0 23.48258770979733 0 0 0 0.9247425010840047 0 0 0 + {I|L}V{I|L} 3.737 + + 12 NaN NaN 108152.1 NaN 6345 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8736 44.782 NaN 118790 35 0 13443 0.261 + -1 LAEELMPML 9 41 531.7641068756666 1061.513660818133 2 532.2820434570312 MULTI HCD FTMS 0 0 0 8730 3938.73095703125 0.8505106371806876 -1 0.029689788818359375 6 Oxidation (M) _LAEELMPM(Oxidation (M))L_ REV__ENSG00000196497|ENST00000354464|IPO4;REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF;REV__ENST00000559588.5_1_14:24652221-24657802:-|nuORF;REV__ENST00000561199.5_1_14:24652794-24657993:-|nuORF;REV__nc|ENSG00000196497|Q8TEX9-2|IPO4 4.75600775471527 0.31496297302216103 1 VSHH 4 -1 11.682 0 0 1.1005 0 0 583.27641493965 0 583.27641493965 0 2.3856062735983112 0 0 0 0 0 0 0 VSHH 1.1005 - 65 NaN NaN 111086.2 NaN 6346 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8737 44.785 NaN 116150 35 0 11921 0.261 -1 HYMSINDSF 9 41 565.2343671467892 1128.4541813603782 2 565.2337646484375 MULTI HCD FTMS 0 0 0 8730 66349.7890625 0.7288847147854436 9 -0.250396728515625 7 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 31.26834338654808 0.10542797264966089 1 NDS{M(Oxidation (M))|F} 4 -1 50.349 0 0 4.4618 0 0 647.2732554674035 0 647.2732554674035 0 50.34949089312384 0 0 0 1.7614393726401687 0 0.3807196863200844 0 NDS{M(Oxidation (M))|F} 4.4618 + + 24 NaN NaN 105473.7 NaN 6347 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8738 44.788 NaN 102260 35 0 12580 0.261 -1 FCAIPQVM 8 42 491.2305438862112 980.4465348392224 2 491.22918701171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))AIPQVM(Oxidation (M))_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 10.183394434864962 0.5188676124868831 1 {I|L}D[NG]V{M(Oxidation (M))|F} 6 -1 37.465 0 0 3.8213 0 0 317.1565345713962 0 317.1565345713962 0 18.25720713938118 0 0 0 1 0 0.4247425010840047 0.3252574989159953 {I|L}D[NG]V{M(Oxidation (M))|F} 3.8213 - 42 + NaN NaN 96061.5 NaN 6348 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8739 44.792 NaN 15561 35 0 4769.4 0.261 + 30218 VIKEHPGLVQR 11 11 638.3801082765004 NaN 0 638.3804931640625 PEAK HCD FTMS 0 0 0 8730 12157.2197265625 0.8594479716112073 -1 0.029689788818359375 9 Unmodified _VIKEHPGLVQR_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45947679-45949381:+|nuORF 0.9622753412299311 0.33939044544643376 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107025.7 NaN 6349 2388 8730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8741 44.797 NaN 1311200 35 0 120200 0.327 + 24488 RYLEGTSCI 9 76 521.2551746038419 1040.4957962744836 2 521.2548828125 MULTI HCD FTMS 0 0 0 8740 772134.8125 1 0 0 1 Unmodified _RYLEGTSCI_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 86.33184430468982 0.004622086694044132 1 [YR]{I|L}EGTSC{I|L} 9 0 + 81.036 0 0 7.7882 7.7882 86.906 0 0 0 1.4396112109466657 16.478174818886373 1.4396112109466657 1.4396112109466657 0 2.110924374808178 0 1.2302046884880937 0 + + [YR]{I|L}EGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGEVVC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGE{I|L}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGC{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEC(Carbamidomethyl (C)){[MG]|[TS]}{I|L};[YR]{I|L}EGC{[MG]|[TS]}{I|L};[CS]{I|L}{[SA]|[TG]}ERY{I|L};[CS]{[SA]|[TG]}{I|L}ERY{I|L};[YR]{I|L}EC(Carbamidomethyl (C)){[MG]|[TS]}{I|L} 7.7882;7.6498;6.5728;6.4992;5.2893;4.9509;3.7881;3.6651;3.5581;3.4548 +;-;-;-;-;-;-;-;-;- + 957 NaN NaN 298386.1 NaN 6350 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8742 44.801 NaN 189770 35 0 28142 0.261 + 19342 NPDEFYYKM 9 40 611.7579431388173 1221.5013333444344 2 611.7573852539062 MULTI HCD FTMS 0 0 0 8740 67711.4296875 0.6067309473376487 -1 0.03308868408203125 2 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 53.31671820480216 0.026930930319421505 1 NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 0 + 72.942 0 0 5.9715 5.9715 93.282 0 0 0 53.47804375441612 8.256886463274284 8.256886463274284 72.94199390617678 0 1.9291746928241125 0 0.3807196863200844 0 + + NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 5.9715 + + 49 + NaN NaN 122212.8 NaN 6351 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8743 44.805 NaN 110970 35 0 13999 0.262 + 8510 HAFVQDTTL 9 40 516.2621603619604 1030.5097677907206 2 516.2612915039062 MULTI HCD FTMS 0 0 0 8740 24131.7265625 0.4966866502662113 1 -0.02630615234375 3 Unmodified _HAFVQDTTL_ ENSG00000137200|ENST00000373451|CMTR1 18.1463463914782 0.20357593197100715 1 Q{[ES]|[DT]|[{I|L}C]}T{I|L} 5 4 30.758 0 0 2.9847 0 0 454.232713767775 0 454.232713767775 0 30.757659435244733 0 0 0 0.805462187404089 0 0.5 0 + Q{[ES]|[DT]|[{I|L}C]}T{I|L} 2.9847 + + 11 NaN NaN 105691.9 NaN 6352 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8744 44.808 NaN 80321 35 0 7963.3 0.261 + 25355 SEAEQTLRF 9 37 540.7691326599166 1079.5237123866332 2 540.7689819335938 MULTI HCD FTMS 0 0 0 8740 18989.6171875 0.5986009287943423 -1 0.03308868408203125 4 Unmodified _SEAEQTLRF_ ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 28.494509381512117 0.11816142465008336 1 {[ES]|[DT]|[{I|L}C]}AEQ[{I|L}T]R{M(Oxidation (M))|F} 9 0 + 43.121 0 0 3.9945 3.9945 84.758 0 0 0 24.537881139012043 14.393105370789598 14.393105370789598 9.208187539523749 0 1.4247425010840047 0 0 0 + + {[ES]|[DT]|[{I|L}C]}AEQ[{I|L}T]R{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}AE[AG][{I|L}T]R{M(Oxidation (M))|F};[HM][{M(Oxidation (M))|F}E][{I|L}T]R{M(Oxidation (M))|F} 3.9945;3.1415;0.80083 +;-;- + 57 + NaN NaN 96044.1 NaN 6353 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8745 44.811 NaN 111600 35 0 25968 0.263 + 15076 LLYRDLSQAM 10 48 403.88098692496675 1208.6211313751003 3 403.88116455078125 MULTI HCD FTMS 0 0 0 8740 8573.2744140625 0.14255842616348932 9 -0.24042510986328125 5 Unmodified _LLYRDLSQAM_ ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 6.723162845929126 0.4397169348982109 1 M 1 9 19.604 0 0 1.622 0 0 1059.570027714747 0 1059.570027714747 0 15 0 0 0 0.5 0 0 0 + M 1.622 + + 5 + NaN NaN 101184.6 NaN 6354 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8746 44.815 NaN 58015 35 0 16979 0.261 + -1 CYFDMWALI 9 24 617.766732877739 1233.5189128222778 2 617.7664184570312 MULTI HCD FTMS 0 0 0 8740 19453.9453125 0.14974094105506988 -14 0.39533233642578125 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))YFDM(Oxidation (M))WALI_ REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF 1.844237919475145 0.33703635659052655 1 {I|L}{I|L} 2 -1 20.969 0 0 1.6999 0 0 989.3411607950502 0 989.3411607950502 0 15.484550065040281 0 0 0 0 0 0 0 {I|L}{I|L} 1.6999 + + 4 NaN NaN 95254.4 NaN 6355 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8747 44.818 NaN 57062 35 0 6861.9 0.263 + 32890 YAAALSQEL 9 36 483.2501557360955 964.485758538991 2 483.2498779296875 MULTI HCD FTMS 0 0 0 8740 20178.490234375 0.6105706017987725 7 -0.18104171752929688 7 Unmodified _YAAALSQEL_ REV__nc|ENSG00000287363|X6R8D5|CIMIP3 7.910154910731844 0.2910521888787154 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AC(Carbamidomethyl (C)) 4 -1 29.297 0 0 3.0376 0 0 0 496.2886204376817 496.2886204376817 20.344406447039063 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AC(Carbamidomethyl (C)) 3.0376 - 17 NaN NaN 88647.5 NaN 6356 2389 8740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8749 44.823 NaN 50721 35 0 3850.9 0.327 + 33151 YEKPNKISKC 10 34 605.3180784281305 1208.621603923061 2 605.3181762695312 MULTI HCD FTMS 0 0 0 8748 53660.32421875 0.2977506232217275 7 -0.19100189208984375 1 Unmodified _YEKPNKISKC_ ENSG00000083817|ENST00000196489|ZNF416 3.5964929083625545 0.45626689593999237 1 HP 2 9 25.969 0 0 2.1487 0 0 0 971.4875871230873 971.4875871230873 -0.5731938998424368 0 -0.5731938998424368 0 0 0.5 0 0 0 HP 2.1487 - 17 + NaN NaN 96935.5 NaN 6357 2390 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8750 44.827 NaN 250490 35 0 42971 0.261 + 8138 GNRQFHCTL 9 54 538.2582820706176 1074.5020112080351 2 538.258056640625 MULTI HCD FTMS 0 0 0 8748 36738.4609375 0.7520909906497275 -1 0.02630615234375 2 Unmodified _GNRQFHCTL_ REV__ENST00000361906.7_1_22:38617127-38617379:-|nuORF 13.90604991867851 0.24021115267848145 1 HCT{I|L} 4 -1 35.477 0 0 3.3018 0 0 602.2908802716812 0 602.2908802716812 0 29.992822134202015 0 0 0 0.3807196863200844 0 0.4247425010840047 0 HCT{I|L} 3.3018 + + 53 NaN NaN 124250.2 NaN 6358 2390 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8751 44.831 NaN 125930 35 0 11885 0.261 + 22152 QKKLEDFR 8 53 532.2982682194986 NaN 0 532.2813720703125 PEAK HCD FTMS 0 0 0 8748 5265.212890625 1 0 0 3 Unmodified _QKKLEDFR_ ENSG00000077522|ENST00000366578|ACTN2;nc|ENSG00000077522|P35609-2|ACTN2 2.302733041254933 0.38822285293237185 1 G 1 8 6.9897 0 0 0.6578 0 0 530.8523214958346 471.67429529361567 1002.5266167894504 0 0 0 0 0 0 0 0 0 G 0.6578 - 11 + NaN NaN 116862.3 NaN 6359 2390 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8752 44.834 NaN 46078 35 0 10516 0.261 -1 RYKLYQEMF 9 28 647.3183876650669 1292.6222223969337 2 647.3179321289062 MULTI HCD FTMS 0 0 0 8748 14378.3095703125 0.12941508878714642 24 -0.6638984680175781 4 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 3.5964929083625545 0.32375295897743744 1 Y 1 -1 4.6041 0 0 0.35618 0 0 569.21061458619 557.3189791315061 1126.5295937176961 0 0 0 0 0 0 0 0 0 Y 0.35618 + + 3 + NaN NaN 92696.2 NaN 6360 2390 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8753 44.838 NaN 26063 35 0 4936.7 0.261 + -1 LFDEKMYEN 9 20 602.7611924138419 1203.5078318944836 2 602.7613525390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _LFDEKM(Oxidation (M))YEN_ REV__ENSG00000174238|ENST00000313486|PITPNA 5.731851221503515 0.3075653528928475 1 E[{I|L}P]{M(Oxidation (M))|F} 4 -1 25.445 0 0 2.1143 0 0 699.2816639630875 0 699.2816639630875 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 E[{I|L}P]{M(Oxidation (M))|F} 2.1143 - 3 NaN NaN 90487.9 NaN 6361 2390 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8755 44.843 NaN 580560 35 0 92446 0.327 -1 HPFFKDMSL 9 66 569.2734612342365 1136.532369535273 2 569.2734985351562 MULTI HCD FTMS 0 0 0 8754 207404.9375 0.4872143057655061 10 -0.276885986328125 1 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 11.494710602746466 0.2610445893512368 1 HP{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.6126 0 0 0 752.3303514996625 752.3303514996625 15.361212714303026 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 + + 115 + NaN NaN 178532.2 NaN 6362 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8756 44.847 NaN 359570 35 0 26810 0.261 + 1575 AYVHMVTHF 9 57 552.7683154465186 1103.5220779598371 2 552.7683715820312 MULTI HCD FTMS 0 0 0 8754 205855.0625 0.12624602405330843 12 -0.32624053955078125 2 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 92.8221339359638 0.0044520161739443126 1 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 97.898 0 0 8.8714 8.8714 94.679 0 0 0 76.92857185869514 10.642492736872597 10.642492736872597 13.239087409443187 0 2.504432191740108 2 0 0 + + AYVHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHWNV{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}SVHWGGV{[ES]|[DT]|[{I|L}C]} 8.8714;7.6717;7.6409;4.7692;3.5898 +;-;+;-;- + 350 + NaN NaN 140391.2 NaN 6363 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8757 44.851 NaN 381170 35 0 95755 0.263 -1 0 63 416.2435305890866 1245.70876236746 3 416.2435607910156 MULTI HCD FTMS 0 0 0 8754 134549.796875 0.2442530166904211 36 -1.016998291015625 3 NaN NaN 1 {I|L}R 2 -1 22.831 0 0 1.8328 0 0 0 973.50174987881 973.50174987881 7.346368802282015 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.8328 - 30 + NaN NaN 146594.3 NaN 6364 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8758 44.854 NaN 435060 35 0 45525 0.261 + 13925 KYQPRIAVF 9 73 561.3269918161378 1120.6394306990755 2 561.3267211914062 MULTI HCD FTMS 0 0 0 8754 158110.703125 0.2827201941267559 -3 0.07892608642578125 4 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 71.13359017698441 0.008721403657255008 1 KYQ 3 6 36.555 0 0 3.2619 0 0 0 698.3990841731892 698.3990841731892 3.6902942569250214 0 0 0 0 0.6861818737241735 0 0 0.3494850021680094 + KYQ 3.2619 + + 688 + NaN NaN 163795.3 NaN 6365 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8759 44.857 NaN 141850 35 0 30169 0.261 -1 0 34 582.7696513906718 1163.5247498481435 2 582.769775390625 MULTI HCD FTMS 0 0 0 8754 39210.7890625 0.17983617825999904 -12 0.3245849609375 5 NaN NaN 1 {M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 55.75 0 0 4.7915 0 0 319.1634999005875 0 319.1634999005875 0 32.13229419702941 0 0 0 1.6989700043360187 0 0 0 {M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 4.7915 - 191 NaN NaN 103265.1 NaN 6366 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8760 44.861 NaN 140950 35 0 12910 0.261 -1 IPEEEQMGL 9 54 531.2440378582778 1060.4735227833555 2 531.7312622070312 MULTI HCD FTMS 0 0 0 8754 7340.61181640625 0.4721692985759454 -3 0.07892608642578125 6 Oxidation (M) _IPEEEQM(Oxidation (M))GL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9 12.240655878213236 0.2545997876781172 1 Q{M(Oxidation (M))|F}G{I|L} 4 -1 32.977 0 0 3.1097 0 0 597.2639027326187 0 597.2639027326187 0 25.98767215588211 0 0 0 0.7059771852360797 0 0 0 Q{M(Oxidation (M))|F}G{I|L} 3.1097 + + 49 NaN NaN 126956.8 NaN 6367 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8761 44.864 NaN 136950 35 0 10395 0.261 + 21156 PPPKKFRS 8 49 478.78747566321056 955.5603983932211 2 478.7873840332031 MULTI HCD FTMS 0 0 0 8754 27000.35546875 0.17445254372790284 -5 0.13834762573242188 7 Unmodified _PPPKKFRS_ ENSG00000172613|ENST00000307980|RAD9A;ENST00000535644.1_1_11:67163166-67165027:+|nuORF 5.230669730166228 0.5342319408533849 1 [YK]QV 4 7 21.682 0 0 2.2691 0 0 0 434.2522371881469 434.2522371881469 19.235162698957282 0 0 0 0 0.4247425010840047 0 0 0.4247425010840047 [YK]QV 2.2691 - 24 + NaN NaN 100778.8 NaN 6368 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8762 44.867 NaN 60143 35 0 5523.4 0.261 -1 CNLQTTLLW 9 32 574.7920525585046 NaN 0 574.7762451171875 PEAK HCD FTMS 0 0 0 8754 4310.19384765625 0.3896650407221842 5 -0.13520431518554688 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))NLQTTLLW_ CCDC142|p.T430N|1|0.27|ENSG00000135637|chr2:74481056-74481056|G/T|missense_variant 3.944395688203298 0.27613285122220627 1 QV 2 -1 7.0783 0 0 0.61681 0 0 387.1436011113465 530.2759493463499 917.4195504576965 0 0 0 0 0 0 0 0 0 QV 0.61681 - 12 + NaN NaN 87769.5 NaN 6369 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8763 44.871 NaN 57858 35 0 7995.1 0.263 -1 GDCRHLRHPAF 11 34 455.89174065324397 1364.653392559932 3 456.22576904296875 MULTI HCD FTMS 0 0 0 8754 9288.0791015625 0.18282408461791488 10 -0.276885986328125 9 Carbamidomethyl (C) _GDC(Carbamidomethyl (C))RHLRHPAF_ ENSG00000182752|ENST00000328252|PAPPA 2.2527281973983926 0.4090409658946738 1 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.903 0 0 1112.542729061987 0 1112.542729061987 0 25.969100130080562 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 1.903 - 4 NaN NaN 91492.5 NaN 6370 2391 8754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8765 44.876 NaN 390290 35 0 49177 0.327 -1 MPTQEVQEL 9 64 545.7578800773736 1089.501207221547 2 545.7576293945312 MULTI HCD FTMS 0 0 0 8764 156550.546875 0.8091252228191703 -2 0.052570343017578125 1 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 33.4449034751529 0.0954363425218424 1 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L} 9 -1 + 49.855 0 0 4.576 4.576 83.251 0 0 0 5.1748371339363075 35.16257482205354 5.1748371339363075 5.642714304385628 0 1.274227503252014 0 0 0 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}EV{[QC]|[C(Carbamidomethyl (C))A]}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]V[AG]E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG][DV]VQE{I|L} 4.576;4.0581;4.0234;3.7308;3.7308;3.4246;3.3438;3.2129;3.1782;2.7413 -;-;-;-;-;-;-;-;-;- 340 NaN NaN 134096 NaN 6371 2392 8764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8766 44.88 NaN 90577 35 0 11554 0.262 -1 EDRMIKLLKF 10 29 436.9163673704084 1307.7272727114253 3 437.25091552734375 MULTI HCD FTMS 0 0 0 8764 9995.8916015625 0.2885614206214514 18 -0.49913787841796875 2 Oxidation (M) _EDRM(Oxidation (M))IKLLKF_ tr|U7T6M1|U7T6M1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00294PE=3SV=1 0.776531954647913 0.4711933975711956 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1168 0 0 1142.6481233967752 0 1142.6481233967752 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1168 + + 5 + NaN NaN 103833.6 NaN 6372 2392 8764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8767 44.884 NaN 121790 35 0 14304 0.261 + -1 INVCSDRIT 9 41 539.2716944625543 1076.5288359919084 2 539.2869262695312 MULTI HCD FTMS 0 0 0 8764 10406.5087890625 0.267398969315025 22 -0.611328125 3 Carbamidomethyl (C) _INVC(Carbamidomethyl (C))SDRIT_ REV__ENSG00000118997|ENST00000312428|DNAH7;REV__nc|ENSG00000118997|Q8WXX0-2|DNAH7 3.5964929083625545 0.32375295897743744 1 C(Carbamidomethyl (C)){I|L} 2 -1 10.969 0 0 1.0189 0 0 53.02099915197011 747.3447035832975 800.3657027352676 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){I|L} 1.0189 - 17 + NaN NaN 99424.8 NaN 6373 2392 8764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8768 44.887 NaN 30587 35 0 4110.3 0.261 -1 FLDRCFQEM 9 19 602.7611924138419 1203.5078318944836 2 602.7620239257812 MULTI HCD FTMS 0 0 0 8764 7911.57421875 0.4511164299899235 2 -0.049434661865234375 4 Oxidation (M) _FLDRCFQEM(Oxidation (M))_ ENSG00000124374|ENST00000244221|PAIP2B 3.2813086475875832 0.32614229037259 1 E[{I|L}P]{M(Oxidation (M))|F} 4 -1 21.198 0 0 1.7613 0 0 699.2836170880875 0 699.2836170880875 0 21.197887582883936 0 0 0 0.5 0 0 0 E[{I|L}P]{M(Oxidation (M))|F} 1.7613 - 2 NaN NaN 87169.9 NaN 6374 2392 8764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8769 44.89 NaN 25542 35 0 5016.4 0.261 -1 MPVGDPPRTVL 11 15 599.317799632783 NaN 0 599.3187255859375 PEAK HCD FTMS 0 0 0 8764 10082.5419921875 0.5696060395042936 5 -0.13843154907226562 5 Oxidation (M) _M(Oxidation (M))PVGDPPRTVL_ ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 4.5288652416199255 0.32927305702295745 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92291.5 NaN 6375 2392 8764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8771 44.895 NaN 144450 35 0 13496 0.327 + 19403 NPFTKEAAL 9 38 495.7661993603286 989.5178457874572 2 495.7660827636719 MULTI HCD FTMS 0 0 0 8770 94360.4453125 0.7389617992041231 2 -0.06605911254882812 1 Unmodified _NPFTKEAAL_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2 47.594388314883695 0.03493607795751234 1 NP{M(Oxidation (M))|F}T 4 5 39.993 0 0 4.0416 0 0 0 527.2843111627561 527.2843111627561 14.023722004121453 0 0 0 0 0.805462187404089 0 0 0 + NP{M(Oxidation (M))|F}T 4.0416 + + 30 + NaN NaN 102666.8 NaN 6376 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8772 44.9 NaN 216600 35 0 20863 0.261 -1 RYLSPKYIKMF 11 65 487.93555575279356 1460.7848378585807 3 488.2698669433594 MULTI HCD FTMS 0 0 0 8770 45834.58984375 0.15529742859919984 37 -1.0465316772460938 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 22.10888232116614 0.26444699522859644 1 [{M(Oxidation (M))|F}T][{I|L}V]RKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 -1 [{M(Oxidation (M))|F}T][{I|L}V]RK + + 22.038 -9.7982 -1.3162 1.5087 1.5087 58.849 0 0 0 0 15.902417735175927 0 0 0 0.8807196863200843 0 0 0 [{M(Oxidation (M))|F}T][{I|L}V]RKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.5087 - 85 + NaN NaN 124245.5 NaN 6377 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8773 44.904 NaN 228180 35 0 17806 0.261 + 2441 DPTVHDDVL 9 52 505.74282237568957 1009.4710918181792 2 505.7427673339844 MULTI HCD FTMS 0 0 0 8770 58901.68359375 0.8668459858585074 -3 0.0722808837890625 3 Unmodified _DPTVHDDVL_ chr8:47858980-47859611|272|13.27|0.78|4.09|-|0|None,PRKDC|1;ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 7.289230182591677 0.29575926068275815 1 VT{M(Oxidation (M))|F} 3 8 20.177 0 0 1.9988 0 0 644.3099722886855 0 644.3099722886855 0 0.7133375178436552 0 0 0 0 0 0 0 VT{M(Oxidation (M))|F} 1.9988 - 59 + NaN NaN 118665.5 NaN 6378 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8774 44.907 NaN 63675 35 0 11320 0.261 + 17709 MAVIDGNVM 9 32 491.2222691242905 980.429985315381 2 491.22149658203125 MULTI HCD FTMS 0 0 0 8770 31009.380859375 0.3600571045815471 26 -0.7434844970703125 4 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 48.345845343767074 0.03388484103555672 1 S{M(Oxidation (M))|F} 2 8 24.464 0 0 2.4952 0 0 728.3571073630358 0 728.3571073630358 0 -0.22878745280337398 -0.22878745280337398 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.4952 - 18 + NaN NaN 102039.7 NaN 6379 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8775 44.91 NaN 52244 35 0 7389.9 0.261 -1 RYQQWMERF 9 26 453.87995229043463 1358.6180274715039 3 453.8799743652344 MULTI HCD FTMS 0 0 0 8770 24608.505859375 0.5659241359987086 9 -0.24048233032226562 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 6.630372943996041 0.3007538891620783 1 R{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.5434 0 0 1037.4377123853694 0 1037.4377123853694 0 10.484550065040281 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.5434 + + 6 + NaN NaN 89038.7 NaN 6380 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8776 44.913 NaN 13334 35 0 4234 0.261 -1 NRSKRSWMW 9 12 633.8114714375128 1265.6083899418254 2 633.8109130859375 MULTI HCD FTMS 0 0 0 8770 18363.48828125 0.050894818474379135 30 -0.8521881103515625 6 Oxidation (M) _NRSKRSWM(Oxidation (M))W_ ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 80890.9 NaN 6381 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8777 44.917 NaN 61755 35 0 8883.3 0.261 + 8630 HEFMEAQPL 9 32 551.25542027264 1100.4962876120799 2 551.25537109375 MULTI HCD FTMS 0 0 0 8770 22203.330078125 0.39574218345042916 10 -0.27349090576171875 7 Unmodified _HEFMEAQPL_ REV__ENSG00000127603|ENST00000564288|MACF1;REV__ENST00000476350.1_1_1:39768622-39838291:+|nuORF;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;REV__MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;REV__nc|ENSG00000127603|Q9UPN3-2|MACF1;REV__nc|ENSG00000127603|Q9UPN3-3|MACF1;REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1 6.723162845929126 0.3000504726104499 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 93056 NaN 6382 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8778 44.92 NaN 32935 35 0 4860.6 0.261 + 5084 FEEVPVDWVM 10 19 625.7899712422575 1249.5653895513149 2 625.7892456054688 MULTI HCD FTMS 0 0 0 8770 3992.713623046875 0.22813670629852217 -3 0.0722808837890625 8 Unmodified _FEEVPVDWVM_ REV__ENSG00000185252|ENST00000400451|ZNF74;REV__ENST00000403682.7_1_22:20748811-20761255:+|nuORF;REV__ENST00000476678.1_1_22:20755529-20761255:+|nuORF;REV__nc|ENSG00000185252|Q16587-2|ZNF74;REV__nc|ENSG00000185252|Q16587-3|ZNF74;REV__nc|ENSG00000185252|Q16587-4|ZNF74 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89962.2 NaN 6383 2393 8770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8780 44.925 NaN 476550 35 0 116960 0.327 + 15702 LPERNVPSL 9 69 512.7927866147686 1023.5710202963372 2 512.7926025390625 MULTI HCD FTMS 0 0 0 8779 260041.96875 0.635118652233177 4 -0.11211395263671875 1 Unmodified _LPERNVPSL_ ENST00000327247.9_1_1:155210492-155214452:-|nuORF 51.41523569358685 0.02959097413485123 1 [PS][RP]{[SA]|[TG]}{I|L}PS{I|L} 10 5 + 55.379 0 0 5.4104 5.4104 83.428 0 0 0 7.42792995119494 27.931825014007217 7.42792995119494 3.0102999566398125 0 0.9247425010840047 1.6989700043360187 0 0.4247425010840047 [PS][RP]{[SA]|[TG]}{I|L}PS{I|L};[PS][RP][TA]VPS{I|L};[PS][RP]{[SA]|[TG]}{I|L}SP{I|L};[PS][RP]{[SA]|[TG]}P{I|L}S{I|L};[PS][RP][TA]VSP{I|L};[PS][RP]{[SA]|[TG]}PS{I|L}{I|L} 5.4104;5.1163;4.0632;3.8241;3.7691;2.5835 -;-;-;-;-;- 219 NaN NaN 167765 NaN 6384 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8781 44.93 NaN 329100 35 0 62278 0.261 + 1081 AYIERMNYI 9 55 594.789514604951 1187.564476276702 2 594.7893676757812 MULTI HCD FTMS 0 0 0 8779 154505.25 0.5274781267780044 3 -0.08899688720703125 2 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 47.594388314883695 0.03493607795751234 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 67.49 0 0 5.683 5.683 87.418 0 0 0 20.165025357721547 16.478174818886373 16.478174818886373 9.208187539523749 0 1.8935078169319297 1.6989700043360187 0 0.7742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DN]{I|L}[YT]C{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DN]{I|L}[YT]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][WP]NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[TV]|[{I|L}S]}CNY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[QS]|[NT]}{[DS]|[MA]|[CV]|TT}Y{I|L} 5.683;4.9076;4.9076;4.7482;4.5773;4.2863;4.2174;4.1155;3.985;3.7589 +;-;-;-;-;-;-;-;-;- + 177 NaN NaN 141876.8 NaN 6385 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8782 44.933 NaN 301390 35 0 63700 0.261 -1 RADQFEYVM 9 55 587.7633580190948 1173.5121631049894 2 587.7634887695312 MULTI HCD FTMS 0 0 0 8779 158596.546875 0.36184426953593063 12 -0.3294258117675781 3 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 29.84058131909904 0.11198220037953927 1 PK{[QV]|[N{I|L}]|[RA]|[KV]}EYV{M(Oxidation (M))|F} 8 -1 64.175 0 0 5.4686 0 0 165.0166949671921 0 165.0166949671921 0 28.18926518994168 0 0 0 2 0 0.3807196863200844 0.6747425010840047 PK{[QV]|[N{I|L}]|[RA]|[KV]}EYV{M(Oxidation (M))|F} 5.4686 - 300 + NaN NaN 122755.7 NaN 6386 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8783 44.936 NaN 314910 35 0 26040 0.264 -1 KMPKFKMPSF 10 67 419.55565402834554 1255.6451326852366 3 419.5556640625 MULTI HCD FTMS 0 0 0 8779 138375.796875 0.36476877063499796 -15 0.4070587158203125 4 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 24.957077063307313 0.27767193849951033 1 S{M(Oxidation (M))|F} 2 -1 21.722 0 0 1.7299 0 0 1003.5337110317195 0 1003.5337110317195 0 -0.9813624419633271 -0.9813624419633271 0 0 0.4247425010840047 0 0 0 S{M(Oxidation (M))|F} 1.7299 + + 32 + NaN NaN 126489.3 NaN 6387 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8784 44.94 NaN 141230 35 0 52338 0.261 -1 EMCILLVI 8 33 475.2584688082251 948.5023846832502 2 475.25830078125 MULTI HCD FTMS 0 0 0 8779 82596.640625 0.7708807719154309 3 -0.08899688720703125 5 Oxidation (M) _EM(Oxidation (M))CILLVI_ CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E 13.50788311687929 0.4944073034352369 1 {I|L}V{I|L} 3 -1 36.198 0 0 3.8163 0 0 605.2588978498062 0 605.2588978498062 0 32.70303756120384 0 0 0 1 0 0 0 {I|L}V{I|L} 3.8163 + + 11 NaN NaN 95740 NaN 6388 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8785 44.943 NaN 116320 35 0 7877.7 0.261 -1 TYENCLQAL 9 51 556.2578385743592 1110.5011242155183 2 556.2576293945312 MULTI HCD FTMS 0 0 0 8779 51419.91015625 0.7552695894490475 1 -0.036334991455078125 6 Carbamidomethyl (C) _TYENC(Carbamidomethyl (C))LQAL_ ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;NLN|p.E232Kfs*12|1|0.67|ENSG00000123213|chr5:65781293-65781293|G/-|frameshift_variant;NLN|p.L231Yfs*6|1|0.67|ENSG00000123213|chr5:65781290-65781291|-/A|frameshift_variant 7.289230182591677 0.29575926068275815 1 VE{I|L} 3 -1 18.672 0 0 1.6814 0 0 751.3209706037125 0 751.3209706037125 0 1.2493873660830026 0 0 0 0 0 0 0 VE{I|L} 1.6814 - 102 NaN NaN 101717.1 NaN 6389 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8786 44.946 NaN 255220 35 0 22369 0.261 + 34642 YPSEQEKALL 10 74 589.3085918487645 1176.602630764329 2 589.3084106445312 MULTI HCD FTMS 0 0 0 8779 113023.9375 0.39661431538043057 -6 0.16139984130859375 7 Unmodified _YPSEQEKALL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 83.27773906761396 0.001852393573912202 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L}{I|L} 10 0 + 71.537 0 0 6.08 6.08 84.837 0 0 0 3.505376425659165 3.505376425659165 3.505376425659165 3.505376425659165 0 2.221848749616356 1.5228787452803376 0.7134679910804405 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L}{I|L};YPSEQEKA{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE[AG]EKA{I|L}{I|L};YPSE[AG]EKA{I|L}{I|L} 6.08;5.782;5.3011;5.0031 +;+;-;- + 350 NaN NaN 126051.5 NaN 6390 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8787 44.95 NaN 222830 35 0 26338 0.261 + 28491 TPQEQVDSL 9 43 508.748331865354 1015.482110797508 2 508.74822998046875 MULTI HCD FTMS 0 0 0 8779 93671.1875 0.6266463699348022 -2 0.049434661865234375 8 Unmodified _TPQEQVDSL_ ENSG00000131165|ENST00000397901|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;nc|ENSG00000131165|Q9HD42-2|CHMP1A 41.95555342248728 0.056367691549927025 1 QVDS{I|L} 5 4 56.058 0 0 5.5203 0 0 455.2007313459 0 455.2007313459 0 40.56810945375766 0 0 0 1.305462187404089 0 0.3807196863200844 0.4247425010840047 + QVDS{I|L} 5.5203 + + 42 NaN NaN 116757.2 NaN 6391 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8788 44.953 NaN 229890 35 0 31044 0.262 + 3049 EAFVERDSL 9 54 533.2641921144673 1064.5138312957345 2 533.263916015625 MULTI HCD FTMS 0 0 0 8779 82379.09375 0.54818677933189 -2 0.049434661865234375 9 Unmodified _EAFVERDSL_ ENSG00000137975|ENST00000370565|CLCA2 63.960520009940105 0.0120409805053046 1 {[CP]|[EA]}{M(Oxidation (M))|F}VE[RD]S{I|L} 9 0 + 44.644 0 0 4.1938 4.1938 89.577 0 0 0 5.029609069850309 2.8212904658563076 2.8212904658563076 44.64387173178174 0 1.3851518780601921 0 1.066901560044258 0 + + {[CP]|[EA]}{M(Oxidation (M))|F}VE[RD]S{I|L} 4.1938 + + 207 + NaN NaN 116188.7 NaN 6392 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8789 44.956 NaN 129060 35 0 37926 0.261 + 18997 NASTDYDL 8 37 449.6926137095905 897.370674485981 2 449.6924133300781 MULTI HCD FTMS 0 0 0 8779 37080.82421875 0.48776704355043893 6 -0.15808868408203125 10 Unmodified _NASTDYDL_ ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF;ENST00000481985.5_1_22:39710087-39711482:-|nuORF 6.2057823575117 0.5327852213979698 1 YD{I|L} 3 5 28.94 0 0 3.225 0 0 488.18821913886876 0 488.18821913886876 0 21.95046257204389 0 0 0 0.4247425010840047 0 0 0 + YD{I|L} 3.225 + + 5 NaN NaN 102742 NaN 6393 2394 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8791 44.962 NaN 759790 35 0 64243 0.327 + 24489 RYLEGTSCI 9 72 521.2551746038419 1040.4957962744836 2 521.2551879882812 MULTI HCD FTMS 0 0 0 8790 402376.75 0.5211224043858274 6 -0.15807723999023438 1 Unmodified _RYLEGTSCI_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 74.19965305603844 0.007729275404663812 1 [YR]{I|L}EGTSC{I|L} 9 0 + 79.804 0 0 7.6698 7.6698 91.985 0 0 0 3.2568864632742844 53.44843468456581 3.2568864632742844 10.233871898888154 0 2.447621246364342 0 0.8494850021680094 0 + + [YR]{I|L}EGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGEVVC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGE{I|L}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGC{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]TSC{I|L};[YR]{I|L}EGC{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEC(Carbamidomethyl (C)){[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]C{[MG]|[TS]}{I|L};[YR]{I|L}EC(Carbamidomethyl (C)){[MG]|[TS]}{I|L} 7.6698;6.6862;6.303;6.2103;4.7149;4.5991;4.0779;4.0105;3.4742;3.3787 +;-;-;-;-;-;-;-;-;- + 961 NaN NaN 210533.4 NaN 6394 2395 8790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8792 44.966 NaN 174280 35 0 30679 0.261 + 19343 NPDEFYYKM 9 48 611.7579431388173 1221.5013333444344 2 611.7581176757812 MULTI HCD FTMS 0 0 0 8790 60261.6875 0.539977237429238 5 -0.12175369262695312 2 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 40.72490554402381 0.06201705472789164 1 NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 0 + 68.109 0 0 5.5759 5.5759 92.506 0 0 0 47.140012553530966 7.147642715192504 7.147642715192504 68.10911268361153 0 1.6237125054200234 0 0.4247425010840047 0 + + NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 5.5759 + + 44 + NaN NaN 111393.6 NaN 6395 2395 8790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8793 44.97 NaN 153390 35 0 49067 0.261 + -1 PYEFMCFQI 9 24 617.766732877739 1233.5189128222778 2 617.76611328125 MULTI HCD FTMS 0 0 0 8790 60456.34375 0.46534467227359705 -8 0.22742462158203125 3 Carbamidomethyl (C) _PYEFMC(Carbamidomethyl (C))FQI_ REV__ENST00000561721.6_1_17:75089357-75138808:+|nuORF 7.910154910731844 0.2910521888787154 1 SE{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 39.38 0 0 3.1925 0 0 626.2270374982437 0 626.2270374982437 0 35.400990676322905 0 0 0 0 0 0.3807196863200844 0 SE{M(Oxidation (M))|F}{I|L}{I|L} 3.1925 - 19 NaN NaN 121658.3 NaN 6396 2395 8790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8794 44.973 NaN 114850 35 0 12518 0.262 + -1 IMKLRMCM 8 42 529.2546091433542 1056.4946653535083 2 529.2547607421875 MULTI HCD FTMS 0 0 0 8790 30074.037109375 0.07248518935704995 21 -0.5782966613769531 4 2 Oxidation (M) _IM(Oxidation (M))KLRMCM(Oxidation (M))_ REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF 10.183394434864962 0.5188676124868831 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N 3 -1 21.171 0 0 2.0039 0 0 0 679.3121756896988 679.3121756896988 1.706962271689747 0 0 0 0 0 1.5228787452803376 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N 2.0039 - 54 NaN NaN 107625.9 NaN 6397 2395 8790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8796 44.978 NaN 378430 35 0 42788 0.327 + 24965 RYTIVQQQI 9 67 574.8247720416651 1147.6349911501302 2 574.824462890625 MULTI HCD FTMS 0 0 0 8795 185443.125 1 0 0 1 Unmodified _RYTIVQQQI_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 75.5705956163825 0.007285660612518157 1 [YR]T{I|L}VQQQ{I|L} 9 0 + 84.447 0 0 7.3584 7.3584 90.428 0 0 0 5.6424927368725974 60.06166867536862 5.6424927368725974 9.208187539523749 0 2.610924374808178 0 0.4247425010840047 0.4247425010840047 + + [YR]T{I|L}VQQQ{I|L};[YR]T{I|L}V[AG]QQ{I|L};[YR]T{I|L}VQQ[AG]{I|L};[YR]T{I|L}VQ[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQQQ{I|L};[YR]T{I|L}V[AG]Q[AG]{I|L};[YR]T{I|L}VQ[AG][AG]{I|L};[YR]T{I|L}V[AG][AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[YK]V[AG]QQ{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQ[AG]Q{I|L} 7.3584;6.556;6.556;6.556;5.9557;5.7574;5.7574;5.7574;5.1534;5.1534 +;-;-;-;-;-;-;-;-;- + 841 NaN NaN 137290.5 NaN 6398 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8797 44.982 NaN 415440 35 0 70290 0.261 + 9477 HPWEVMPEL 9 55 569.2734612342365 1136.532369535273 2 569.2730712890625 MULTI HCD FTMS 0 0 0 8795 166295.15625 0.390643444081509 15 -0.4266624450683594 2 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 20.453626601364224 0.18364154288633264 1 HP{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{[HG]|PP}PE{I|L} 10 5 + 31.686 0 0 2.788 2.788 86.431 0 0 0 0.05780949711784089 1.9935592216109654 0.05780949711784089 16.774400170273577 0 0.6549471895720984 0 0.3252574989159953 0 HP{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{[HG]|PP}PE{I|L};HP{M(Oxidation (M))|F}[QT][YT]M{I|L} 2.788;1.3121 -;- 214 + NaN NaN 143888.5 NaN 6399 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8798 44.986 NaN 241800 35 0 17653 0.261 + 7156 FSFRYQQE 8 46 552.7565718722481 NaN 0 552.7683715820312 PEAK HCD FTMS 0 0 0 8795 5325.07861328125 0.5334336604505397 1 -0.036266326904296875 3 Unmodified _FSFRYQQE_ ENSG00000184743|ENST00000398868|ATL3 14.838274106304384 0.38780017429789254 1 SVHMVT 6 7 37.652 0 0 3.412 0 0 147.04382014907634 299.1146334283813 446.15845357745764 0 0 0 0 0 0 0 0.5 0 SVHMVT 3.412 - 275 + NaN NaN 124785.2 NaN 6400 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8799 44.989 NaN 337670 35 0 88192 0.263 + -1 LGSNKRMRLR 10 63 416.2435305890866 1245.70876236746 3 416.2433776855469 MULTI HCD FTMS 0 0 0 8795 103665.109375 0.18818694846421485 41 -1.1650466918945312 4 Oxidation (M) _LGSNKRM(Oxidation (M))RLR_ REV__ENSG00000083067|ENST00000677713|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-11|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-2|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-4|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-5|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-6|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-7|TRPM3;REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3;REV__nc|ENSG00000083067|Q9HCF6|TRPM3 8.444304893310646 0.4306066564229251 1 {I|L}R 2 -1 22.831 0 0 1.8328 0 0 0 973.504185858557 973.504185858557 4.827796776480469 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.8328 + + 25 + NaN NaN 133657.9 NaN 6401 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8800 44.993 NaN 273750 35 0 27803 0.261 -1 SEMWGAPLPRC 11 62 421.52654827093176 1261.5578154129953 3 421.52655029296875 MULTI HCD FTMS 0 0 0 8795 80280.953125 0.7995027752792143 1 -0.036266326904296875 5 Oxidation (M) _SEM(Oxidation (M))WGAPLPRC_ SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|36|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|5|1|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|38|3|sense 2.0839675508343545 0.40978109276162705 1 TP{[YC]|[HE]}E{M(Oxidation (M))|F}{I|L}[R{I|L}] 9 -1 27.91 0 0 2.2123 0 0 120.9775674655328 0 120.9775674655328 0 13.930534213938092 0 0 0 0.3807196863200844 0 0 0 TP{[YC]|[HE]}E{M(Oxidation (M))|F}{I|L}[R{I|L}] 2.2123 - 72 + NaN NaN 124605.8 NaN 6402 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8801 44.996 NaN 210780 35 0 18118 0.261 + 16175 LPVEHVNQL 9 58 524.7929251212918 1047.5712973093835 2 524.7922973632812 MULTI HCD FTMS 0 0 0 8795 90661.8515625 0.5139514766600107 -2 0.052730560302734375 6 Unmodified _LPVEHVNQL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 72.96794272382148 0.008127836904478181 1 [{I|L}P][HD]{I|L}VNQ{I|L} 9 3 + 54.367 0 0 5.1898 5.1898 82.074 0 0 0 1.0529518128597317 38.12994539264543 1.0529518128597317 0.8460550734051111 0 1.589136830878453 1.3979400086720375 0.28872548999643577 0.3807196863200844 [{I|L}P][HD]{I|L}VNQ{I|L};[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}HVNQ{I|L};[{I|L}P][HD]{I|L}VGGQ{I|L};[{I|L}P][HD]{I|L}VN[AG]{I|L};[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}HVGGQ{I|L};[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}HVN[AG]{I|L} 5.1898;5.1091;4.3108;4.3108;4.2301;4.2301 -;+;-;-;-;- + 227 NaN NaN 113240.3 NaN 6403 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8802 44.999 NaN 188850 35 0 26960 0.261 + 20455 PAPPSFSPPS 10 42 492.24647619306256 NaN 0 492.2609558105469 PEAK HCD FTMS 0 0 0 8795 3659.034423828125 0.20952869717634473 2 -0.059383392333984375 7 Unmodified _PAPPSFSPPS_ REV__ENSG00000197948|ENST00000435817|FCHSD1;REV__nc|ENSG00000197948|Q86WN1-2|FCHSD1 13.90604991867851 0.3282826376286837 1 APD[PG]DP 7 -1 17.568 0 0 1.7881 0 0 131.0649626784114 199.10859094791252 330.17355362632395 0 0 0 0 0 0 0 0.4247425010840047 0 APD[PG]DP 1.7881 - 64 + NaN NaN 112636.8 NaN 6404 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8803 45.002 NaN 166900 35 0 19064 0.261 -1 HYMSINDSF 9 47 565.2343671467892 1128.4541813603782 2 565.2341918945312 MULTI HCD FTMS 0 0 0 8795 42687.08984375 0.4689384509794548 17 -0.4860649108886719 8 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 15.248480904072842 0.22861284681709862 1 VTNDS{M(Oxidation (M))|F} 6 -1 38.537 0 0 3.415 0 0 447.15730483222814 0 447.15730483222814 0 28.07950361376122 0 0 0 0.8807196863200843 0 0 0 VTNDS{M(Oxidation (M))|F} 3.415 - 104 NaN NaN 116854.8 NaN 6405 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8804 45.006 NaN 88500 35 0 9358.1 0.261 + 8836 HLESDAFLV 9 49 515.7634591054242 NaN 0 515.763427734375 PEAK HCD FTMS 0 0 0 8795 15735.2314453125 0.5740032366434665 1 -0.036266326904296875 9 Unmodified _HLESDAFLV_ ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736-5|BRCC3;nc|ENSG00000185515|P46736|BRCC3 11.640296217721598 0.23883959125015683 1 K 1 9 9.732 0 0 0.9453 0 0 671.2554815879984 227.14087854556877 898.3963601335671 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.9453 - 14 + NaN NaN 106808.7 NaN 6406 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8805 45.009 NaN 27687 35 0 4657.6 0.261 + 9199 HPLLPFYPPE 10 24 605.3180784281305 1208.621603923061 2 605.8206176757812 MULTI HCD FTMS 0 0 0 8795 21354.66015625 0.17692226834392868 14 -0.39697265625 10 Unmodified _HPLLPFYPPE_ ENSG00000114923|ENST00000358055|SLC4A3;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3 3.5964929083625545 0.45626689593999237 1 HP 2 8 22.959 0 0 1.8996 0 0 0 971.4867704316771 971.4867704316771 22.95880017344075 0 0 0 0 0.5 0 0 0 + HP 1.8996 + + 2 + NaN NaN 84623.5 NaN 6407 2396 8795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8807 45.014 NaN 673280 35 0 85425 0.327 + 13926 KYQPRIAVF 9 82 561.3269918161378 1120.6394306990755 2 561.3267822265625 MULTI HCD FTMS 0 0 0 8806 415232.15625 0.7424830419599177 3 -0.069091796875 1 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 107.99703571036002 0.003269392969029945 1 {[HG]|PP}PQPR{I|L}AV{M(Oxidation (M))|F} 10 3 + 52.612 0 0 4.6948 4.6948 81.572 0 0 0 1.5321251377534395 6.510234424404686 1.5321251377534395 1.5321251377534395 0 2.1237125054200234 0 0 1.1989700043360187 {[HG]|PP}PQPR{I|L}AV{M(Oxidation (M))|F};[YK]QPR{I|L}AV{M(Oxidation (M))|F};[YK][AG]PR{I|L}AV{M(Oxidation (M))|F};[YQ]KPR{I|L}AV{M(Oxidation (M))|F};{[HG]|PP}P[AG]PR{I|L}AV{M(Oxidation (M))|F} 4.6948;4.5581;3.7364;3.6548;3.498 -;+;-;-;- + 355 NaN NaN 189755.9 NaN 6408 2397 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8808 45.019 NaN 205890 35 0 15732 0.262 -1 ALPRVQLC 8 59 478.7724093138673 NaN 0 478.78717041015625 PEAK HCD FTMS 0 0 0 8806 7805.25439453125 0.8292511519912565 -1 0.036266326904296875 2 Carbamidomethyl (C) _ALPRVQLC(Carbamidomethyl (C))_ ENST00000361170.6_1_1:156496043-156496265:-|nuORF 13.50788311687929 0.38822285293237185 1 QV 2 -1 11.722 0 0 1.2267 0 0 291.12999770035384 434.2526949518188 725.3826926521726 0 0 0 0 0 0 0 0 0.4247425010840047 QV 1.2267 - 13 + NaN NaN 112878.4 NaN 6409 2397 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8809 45.022 NaN 290590 35 0 67623 0.261 + 24301 RYFTAYTEN 9 53 582.7696513906718 1163.5247498481435 2 582.76953125 MULTI HCD FTMS 0 0 0 8806 131388.109375 0.6025978059544883 -6 0.17147064208984375 3 Unmodified _RYFTAYTEN_ ENSG00000016602|ENST00000370563|CLCA4 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 8 8 61.745 0 0 5.3067 0 0 319.16401869941564 0 319.16401869941564 0 16.307196863200843 0 0 0 2.298455006504028 0 0 0 {M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 5.3067 - 427 NaN NaN 122976.3 NaN 6410 2397 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8810 45.026 NaN 28571 35 0 6689.5 0.261 -1 RYKLYQEMF 9 19 647.3183876650669 1292.6222223969337 2 647.3181762695312 MULTI HCD FTMS 0 0 0 8806 19195.693359375 0.17277499474372218 31 -0.8784942626953125 4 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82448.5 NaN 6411 2397 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8811 45.029 NaN 27202 35 0 3865.5 0.264 + 451 ALLTRLLPLRR 11 25 441.29741524798993 NaN 0 441.2970886230469 PEAK HCD FTMS 0 0 0 8806 21382.1640625 0.4164712131982619 61 -1.5780792236328125 5 Unmodified _ALLTRLLPLRR_ nc|ENSG00000167889|Q3V5L5-2|MGAT5B 0.09484139111097674 0.34185110575506755 1 Y 1 11 5.4846 0 0 0.62283 0 0 440.8706350840674 273.6263521783813 714.4969872624487 0 0 0 0 0 0 0 0 0 Y 0.62283 - 1 + NaN NaN 87301.9 NaN 6412 2397 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8812 45.032 NaN 39700 35 0 8692.5 0.261 -1 RHCQLWCLV 9 28 607.8015405415367 NaN 0 607.8013916015625 PEAK HCD FTMS 0 0 0 8806 4295.87744140625 0.19684844501945492 1 -0.0231170654296875 6 Carbamidomethyl (C) _RHC(Carbamidomethyl (C))QLWCLV_ ENST00000470364.5_1_1:38335671-38338691:-|nuORF 4.3292370932331545 0.2742679634796037 1 W 1 -1 2.4743 0 0 0.20388 0 0 434.88498918678584 589.6014498346311 1024.486439021417 0 0 0 0 0 0 0 0 0 W 0.20388 + + 2 + NaN NaN 88819.1 NaN 6413 2397 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8814 45.037 NaN 287790 35 0 24847 0.327 -1 MPTQEVQEL 9 70 545.7578800773736 1089.501207221547 2 545.7577514648438 MULTI HCD FTMS 0 0 0 8813 70124.0234375 0.36243320270320145 4 -0.09864425659179688 1 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 23.789781309258295 0.1548179064208189 1 VQE{I|L} 4 -1 37.735 0 0 3.4635 0 0 602.2367420880875 0 602.2367420880875 0 15.717881473224857 0 0 0 0.7302046884880937 0 0 0 VQE{I|L} 3.4635 + + 280 NaN NaN 127380.4 NaN 6414 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8815 45.042 NaN 341160 35 0 29982 0.261 + 25185 SANLEEVTM 9 57 505.22895669502753 1008.4433604568551 2 505.22894287109375 MULTI HCD FTMS 0 0 0 8813 104685.734375 0.26607442266833464 -7 0.19458770751953125 2 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 82.5293158979368 0.005033931517079822 1 EEVT{M(Oxidation (M))|F} 5 4 58.8 0 0 5.8308 0 0 385.19554335761876 0 385.19554335761876 0 51.35274404843592 0 0 0 1.9247425010840047 0 0.7614393726401688 0 + EEVT{M(Oxidation (M))|F} 5.8308 + + 156 NaN NaN 134057.2 NaN 6415 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8816 45.045 NaN 157210 35 0 21999 0.261 -1 RYLSPKYIKMF 11 49 487.93555575279356 1460.7848378585807 3 487.9351806640625 MULTI HCD FTMS 0 0 0 8813 75580.3671875 0.23722244154825103 42 -1.1814613342285156 3 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 14.170726826480097 0.3336124043171337 1 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 11.254 0 0 0.77041 0 0 744.4266856611065 0 744.4266856611065 0 8.155075724862257 0 0 0 0.9247425010840047 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.77041 + + 14 + NaN NaN 114270.8 NaN 6416 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8817 45.049 NaN 363540 35 0 106170 0.261 + 12420 KPINSDFRSVF 11 41 437.23468217668506 1308.6822171302551 3 437.2344970703125 MULTI HCD FTMS 0 0 0 8813 77003.109375 0.327121071793339 -4 0.11211395263671875 4 Unmodified _KPINSDFRSVF_ ENSG00000153201|ENST00000283195|RANBP2 6.623454094837244 0.3898724468670146 1 V{M(Oxidation (M))|F} 2 9 30.969 0 0 2.3664 0 0 1044.5350736164744 0 1044.5350736164744 0 30.255762612236904 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3664 + + 8 + NaN NaN 147917.8 NaN 6417 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8818 45.052 NaN 238580 35 0 46419 0.261 + 7360 FVDPSQDHAL 10 46 564.7690139833837 1127.5234750335674 2 564.7694091796875 MULTI HCD FTMS 0 0 0 8813 93518.4453125 0.6571551497066278 -4 0.11211395263671875 5 Unmodified _FVDPSQDHAL_ ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196|AFDN 11.494710602746466 0.4035943721457025 1 D{NN|[MP]|[D{I|L}]|[EV]} 3 7 19.705 0 0 1.7476 0 0 766.3606529730039 0 766.3606529730039 0 12.23074980804633 0 0 0 0.9247425010840047 0 0 0 D{NN|[MP]|[D{I|L}]|[EV]} 1.7476 - 36 NaN NaN 115802.6 NaN 6418 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8819 45.055 NaN 61114 35 0 4838.4 0.261 -1 VMSQALKATF 10 40 556.2940757611307 1110.5735985890612 2 556.2936401367188 MULTI HCD FTMS 0 0 0 8813 37116.86328125 0.10682133839065176 30 -0.855377197265625 6 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 23.80106514851385 0.2884848839100546 1 KAT{M(Oxidation (M))|F} 4 -1 28.123 0 0 2.5323 0 0 645.3151722638687 0 645.3151722638687 0 9.539106406846045 0 0 0 1.1747425010840047 0 0 0 KAT{M(Oxidation (M))|F} 2.5323 + + 27 NaN NaN 98341.6 NaN 6419 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8820 45.058 NaN 53055 35 0 6466.9 0.261 + 23616 RPLEDLTF 8 34 495.7661993603286 989.5178457874572 2 495.7658386230469 MULTI HCD FTMS 0 0 0 8813 23339.771484375 0.18277997175604774 7 -0.18767166137695312 7 Unmodified _RPLEDLTF_ REV__ENSG00000187545|ENST00000235347|PRAMEF10;REV__ENSG00000237700|ENST00000437300|PRAMEF33 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94382 NaN 6420 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8821 45.062 NaN 28208 35 0 8569.1 0.261 + -1 DHRRYADLCG 10 16 631.7875199167959 1261.5604869003917 2 631.7879028320312 MULTI HCD FTMS 0 0 0 8813 11968.3212890625 0.5332617853944738 1 -0.032894134521484375 8 Carbamidomethyl (C) _DHRRYADLC(Carbamidomethyl (C))G_ REV__ENSG00000008197|ENST00000008391|TFAP2D;REV__TFAP2D|p.F304Lfs*14|1|0.22|ENSG00000008197|chr6:50745132-50745132|T/-|frameshift_variant 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87106.9 NaN 6421 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8822 45.065 NaN 16794 35 0 3400.4 0.261 -1 YNRWLCQAR 9 18 633.8114714375128 1265.6083899418254 2 633.8117065429688 MULTI HCD FTMS 0 0 0 8813 24920.783203125 0.06906850800549905 35 -0.990264892578125 9 Carbamidomethyl (C) _YNRWLC(Carbamidomethyl (C))QAR_ ENSG00000196505|ENST00000369443|GDAP2;ENST00000464026.1_1_1:118426024-118439585:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95880.4 NaN 6422 2398 8813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8824 45.07 NaN 89272 35 0 11742 0.327 + 9943 IDPPPVHESP 10 35 544.2748406993076 1086.535128465415 2 544.2747192382812 MULTI HCD FTMS 0 0 0 8823 26024.318359375 0.689951714335276 1 -0.013080596923828125 1 Unmodified _IDPPPVHESP_ ENSG00000163635|ENST00000674280|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENST00000484668.1_1_3:63973932-63976536:+|nuORF;nc|ENSG00000163635|O15265-2|ATXN7;nc|ENSG00000163635|O15265-3|ATXN7 5.731851221503515 0.44496410492002586 1 E{M(Oxidation (M))|F} 2 9 17.959 0 0 1.6529 0 0 0 807.3902071588499 807.3902071588499 4.286662482156345 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.6529 - 19 + NaN NaN 93903.9 NaN 6423 2399 8823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8825 45.075 NaN 138340 35 0 16744 0.261 -1 0 46 610.1819824948313 609.1747060282313 1 612.1813354492188 MULTI HCD FTMS 0 0 0 8823 32418.513671875 0.7761101887742444 14 -0.3937873840332031 2 NaN NaN 1 Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3 -1 7.4473 0 0 1.2225 0 0 152.9704651608469 0 152.9704651608469 0 7.447274948966937 0 0 0 0 0 0 0 Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.2225 - 3 + NaN NaN 106812.8 NaN 6424 2399 8823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8826 45.078 NaN 9758.8 35 0 4155.8 0.261 -1 MLKFMRPPSC 10 7 633.8114714375128 1265.6083899418254 2 633.8106689453125 MULTI HCD FTMS 0 0 0 8823 28304.580078125 0.07844677672381979 36 -1.0167007446289062 3 Carbamidomethyl (C) _MLKFMRPPSC(Carbamidomethyl (C))_ ENST00000431611.5_2_22:38689311-38696738:-|nuORF 0.35063188157827746 0.47344775436540215 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87305.3 NaN 6425 2399 8823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8828 45.083 NaN 427160 35 0 38943 0.327 + 17978 MKSERVGILSG 11 77 588.8237318615512 1175.6329107899023 2 589.3085327148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _MKSERVGILSG_ ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000111664|P16520-2|GNB3 15.248480904072842 0.3242218977034194 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L} 9 7 50.53 0 0 4.2981 0 0 0 127.10203557772856 127.10203557772856 8.168563304579024 0 0 0 0 0 1.3979400086720375 0.3807196863200844 0.5866968715561641 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L} 4.2981 - 1506 NaN NaN 154492.5 NaN 6426 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8829 45.088 NaN 588780 35 0 51567 0.264 + 12323 KMPKFKMPSF 10 95 419.55565402834554 1255.6451326852366 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8827 254447.921875 0.6707434229760331 -9 0.24056243896484375 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 55.466997841574724 0.05790726984578158 1 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 61.921 0 0 4.9314 4.9314 84.843 0 0 0 41.25955625825256 15.293774815719196 15.293774815719196 8.02378753635658 0 1.7302046884880937 0 0.3807196863200844 0 + + K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};[KP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4.9314;4.2924;0.26778 +;-;- + 466 + NaN NaN 176780.3 NaN 6427 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8830 45.091 NaN 951460 35 0 99687 0.261 + 22862 QYNPKFQTL 9 94 569.7981026151975 1137.581652297195 2 569.7977905273438 MULTI HCD FTMS 0 0 0 8827 258219 0.5227966779697691 -2 0.0459747314453125 3 Unmodified _QYNPKFQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 118.0683919894846 0.0016252157255221692 1 [YQ]NPK{M(Oxidation (M))|F}QT{I|L} 9 0 + 56.189 0 0 4.9393 4.9393 86.149 0 0 0 29.395341996516677 22.25191164684464 22.25191164684464 9.208187539523749 0 1.3851518780601921 1 1.5576556684809653 0.2614393726401688 + + [YQ]NPK{M(Oxidation (M))|F}QT{I|L};[YQ]GGPK{M(Oxidation (M))|F}QT{I|L};[YQ]NPK{M(Oxidation (M))|F}[AG]T{I|L};[YQ]GGPK{M(Oxidation (M))|F}[AG]T{I|L};[YQ]NPK[Q{I|L}][{M(Oxidation (M))|F}T];[YQ]GGPK[Q{I|L}][{M(Oxidation (M))|F}T];T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[SG]K{M(Oxidation (M))|F}QT{I|L};[YQ]VV[KP]N[YQ] 4.9393;4.1299;3.9001;3.0944;2.4819;1.6725;0.94212;0.60036 +;-;-;-;-;-;-;- + 1658 + NaN NaN 230821.6 NaN 6428 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8831 45.095 NaN 184240 35 0 19170 0.261 + 28492 TPQEQVDSL 9 48 508.748331865354 1015.482110797508 2 508.7482604980469 MULTI HCD FTMS 0 0 0 8827 82634.0078125 0.5528092726364466 4 -0.10538482666015625 4 Unmodified _TPQEQVDSL_ ENSG00000131165|ENST00000397901|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;nc|ENSG00000131165|Q9HD42-2|CHMP1A 45.69961567697781 0.039180348357221985 1 VDS{I|L} 4 5 48.36 0 0 4.7622 0 0 583.2600149800812 0 583.2600149800812 0 38.19599075987611 0 0 0 1.2614393726401687 0 0.3807196863200844 0 + VDS{I|L} 4.7622 + + 53 NaN NaN 115491.9 NaN 6429 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8832 45.098 NaN 112760 35 0 13548 0.261 + 3050 EAFVERDSL 9 42 533.2641921144673 1064.5138312957345 2 533.26416015625 MULTI HCD FTMS 0 0 0 8827 51018.5 0.33949957359592864 4 -0.10538482666015625 5 Unmodified _EAFVERDSL_ ENSG00000137975|ENST00000370565|CLCA2 26.268140514670165 0.13340543277302316 1 {[CP]|[EA]}{M(Oxidation (M))|F}VE 5 4 29.253 0 0 2.748 0 0 0 486.23215662174067 486.23215662174067 14.648415687162952 0 0 0 0 0.7302046884880937 0 0.4247425010840047 0 + {[CP]|[EA]}{M(Oxidation (M))|F}VE 2.748 + + 81 + NaN NaN 101558.5 NaN 6430 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8833 45.101 NaN 208740 35 0 27952 0.261 + 1186 AYLHTTTTF 9 41 527.7638140972006 1053.513075261201 2 527.7632446289062 MULTI HCD FTMS 0 0 0 8827 74504.40625 0.41570845635079606 -3 0.069091796875 6 Unmodified _AYLHTTTTF_ ENSG00000108846|ENST00000285238|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3 67.34385681178166 0.00994769994983633 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{[DS]|[MA]|[CV]|TT}TT{M(Oxidation (M))|F} 9 0 + 61.602 0 0 5.8472 5.8472 92.886 0 0 0 11.908774565059588 32.04628427264403 11.908774565059588 61.60151216962362 0 1.9247425010840047 1.5228787452803376 1.274227503252014 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{[DS]|[MA]|[CV]|TT}TT{M(Oxidation (M))|F} 5.8472 + + 124 NaN NaN 115378.6 NaN 6431 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8834 45.105 NaN 145110 35 0 19332 0.261 + 10744 IRLNPDPSI 9 47 512.7927866147686 1023.5710202963372 2 512.7926025390625 MULTI HCD FTMS 0 0 0 8827 50201.53515625 0.1226107135772635 10 -0.2916145324707031 7 Unmodified _IRLNPDPSI_ REV__ENSG00000148606|ENST00000372371|POLR3A 16.149105407346934 0.22083165093524068 1 {I|L}P[RV]QD{I|L}[PS] 9 -1 + 36.282 0 0 3.5446 3.5446 59.63 0 0 0 12.993493689375846 0 0 0 0 0.5 0 1.274227503252014 0 {I|L}P[RV]QD{I|L}[PS];{I|L}P[RV]QDPS{I|L};{I|L}P[RV][AG]DPS{I|L};{I|L}P[RV][AG]D{I|L}[PS];{I|L}P[RV]Q[PS]D{I|L} 3.5446;3.5446;2.645;2.645;1.0299 -;-;-;-;- 226 + NaN NaN 109037.6 NaN 6432 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8835 45.108 NaN 270060 35 0 42728 0.261 + 13406 KYPENDLFRKL 11 46 474.9296036255803 1421.7669814769408 3 475.2642822265625 MULTI HCD FTMS 0 0 0 8827 40084.3203125 0.4042387772729382 -3 0.069091796875 8 Unmodified _KYPENDLFRKL_ ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 26.120906184454547 0.22949009976804816 1 KY[EP][DN]{I|L} 7 4 32.051 0 0 2.2543 0 0 0 559.33682947612 559.33682947612 24.092116249424507 0 0 0 0 0.8807196863200843 0 0 0.4247425010840047 + KY[EP][DN]{I|L} 2.2543 + + 19 + NaN NaN 123732.9 NaN 6433 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8836 45.111 NaN 157870 35 0 39485 0.261 -1 GIVVSANCKLR 11 52 406.2322110984769 1215.6748038956307 3 406.5670471191406 MULTI HCD FTMS 0 0 0 8827 15891.91015625 0.6906502800446985 1 -0.03632354736328125 9 Carbamidomethyl (C) _GIVVSANC(Carbamidomethyl (C))KLR_ ENSG00000163689|ENST00000482387|CFAP20DC;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC 6.623454094837244 0.3898724468670146 1 {[VA]|[{I|L}G]}VD 4 -1 43.94 0 0 3.6145 0 0 0 828.4511780246548 828.4511780246548 29.336068845642203 0 0 0 0 0.7742275032520141 2 0 0 {[VA]|[{I|L}G]}VD 3.6145 - 16 + NaN NaN 105539.9 NaN 6434 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8837 45.115 NaN 72977 35 0 11899 0.261 + -1 VCVCHLWASF 10 33 639.7912845566211 1277.5680161800422 2 639.7913208007812 MULTI HCD FTMS 0 0 0 8827 28881.59375 0.5096824097896793 -4 0.10535812377929688 10 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 10.823927491677226 0.4098686510432541 1 NDYTNS{M(Oxidation (M))|F} 7 -1 59.201 0 0 4.6338 0 0 418.2315846173844 0 418.2315846173844 0 59.20055737786221 0 0 0 0.9247425010840047 0 0.4247425010840047 0 NDYTNS{M(Oxidation (M))|F} 4.6338 - 52 NaN NaN 98452.2 NaN 6435 2400 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8839 45.12 NaN 196270 35 0 60530 0.327 -1 MHCDGGISMIL 11 32 617.766732877739 1233.5189128222778 2 617.7667846679688 MULTI HCD FTMS 0 0 0 8838 91940.46875 0.7076843329472705 -2 0.049404144287109375 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 13.042465956692817 0.3434429782671734 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 45.745 0 0 3.7085 0 0 713.2610951154312 0 713.2610951154312 0 41.76599703664159 0 0 0 1 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.7085 - 17 NaN NaN 118724.2 NaN 6436 2401 8838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8840 45.124 NaN 145970 35 0 13932 0.261 + 21792 QAILQEREL 9 51 550.3088367846535 1098.603120636107 2 550.3092041015625 MULTI HCD FTMS 0 0 0 8838 76827.1484375 0.4655205991459761 -4 0.10541534423828125 2 Unmodified _QAILQEREL_ DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant;ENSG00000135829|ENST00000367549|DHX9;ENST00000477802.1_1_1:182828020-182829385:+|nuORF 47.594388314883695 0.03493607795751234 1 [QA]{I|L}{I|L}QE 6 3 44.085 0 0 4.0129 0 0 0 413.21430383853755 413.21430383853755 23.015384402724592 0 0 0 0 0.7614393726401688 0 0.805462187404089 0 + [QA]{I|L}{I|L}QE 4.0129 + + 117 + NaN NaN 111952.3 NaN 6437 2401 8838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8841 45.128 NaN 45256 35 0 6332.6 0.261 + -1 EFKEVAKM 8 32 499.2544905886622 NaN 0 499.25421142578125 PEAK HCD FTMS 0 0 0 8838 4445.7041015625 0.2040630886692565 1 -0.016345977783203125 3 Oxidation (M) _EFKEVAKM(Oxidation (M))_ REV__tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1 5.230669730166228 0.38822285293237185 1 G{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K 5 -1 12.218 0 0 1.2261 0 0 329.1556964099431 162.02332483463127 491.1790212445744 0 0 0 0 0 0 0 0 0 G{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K 1.2261 - 10 + NaN NaN 90920 NaN 6438 2401 8838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8842 45.131 NaN 32384 35 0 6709.1 0.261 -1 QLCPETWFEF 10 32 452.8698502000532 NaN 0 452.87030029296875 PEAK HCD FTMS 0 0 0 8838 17318.119140625 0.6810555178167578 11 -0.3113517761230469 4 Carbamidomethyl (C) _QLC(Carbamidomethyl (C))PETWFEF_ ENST00000599239.5_1_19:48565437-48599986:-|nuORF 1.4551175022131473 0.3389389101219087 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90106.4 NaN 6439 2401 8838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8844 45.136 NaN 167850 35 0 13158 0.327 + 1576 AYVHMVTHF 9 45 552.7683154465186 1103.5220779598371 2 552.7683715820312 MULTI HCD FTMS 0 0 0 8843 96218.3828125 0.05900845052531712 23 -0.6610183715820312 1 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 71.13359017698441 0.008721403657255008 1 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 96.604 0 0 8.7541 8.7541 94.912 0 0 0 75.63486257521106 10.642492736872597 10.642492736872597 15 0 2.1989700043360187 1.6989700043360187 0 0 + + AYVHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHVC{I|L};{M(Oxidation (M))|F}SVHW{[NV]|[RG]}C{I|L};A[{I|L}T][C(Carbamidomethyl (C))R]VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}WH[VS]{[NV]|[RG]}C{I|L} 8.7541;7.3949;4.4704;3.7122;3.4764;2.7389 +;-;-;-;-;- + 178 + NaN NaN 110073 NaN 6440 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8845 45.14 NaN 284380 35 0 80756 0.263 -1 0 50 416.2435305890866 1245.70876236746 3 416.24346923828125 MULTI HCD FTMS 0 0 0 8843 105343.734375 0.1912342159418675 47 -1.3490829467773438 2 NaN NaN 1 N 1 -1 5.4846 0 0 0.44028 0 0 164.20890782670227 964.4518255357114 1128.6607333624136 0 0 0 0 0 0 0 0 0 N 0.44028 - 11 + NaN NaN 127833 NaN 6441 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8846 45.144 NaN 221830 35 0 23422 0.261 + 15957 LPPVWESVT 9 48 514.2754653209413 1026.5363777086825 2 514.2750244140625 MULTI HCD FTMS 0 0 0 8843 73916.328125 0.742558805425026 -2 0.052669525146484375 3 Unmodified _LPPVWESVT_ ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;nc|ENSG00000173805|P54257|HAP1 16.942295170755138 0.21397866736869717 1 {I|L}P 2 7 40.445 0 0 3.94 0 0 0 813.3816379112106 813.3816379112106 25.679096297772116 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 + {I|L}P 3.94 + + 26 + NaN NaN 110269.5 NaN 6442 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8847 45.147 NaN 116720 35 0 14107 0.261 + 24966 RYTIVQQQI 9 47 574.8247720416651 1147.6349911501302 2 574.8245239257812 MULTI HCD FTMS 0 0 0 8843 45448.9921875 0.24508318756761677 6 -0.17803192138671875 4 Unmodified _RYTIVQQQI_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 27.223235318498237 0.1251536255799991 1 VQQQ{I|L} 5 4 54.949 0 0 4.788 0 0 533.2983265607437 0 533.2983265607437 0 44.14651886415513 0 0 0 1.6989700043360187 0 0 0 + VQQQ{I|L} 4.788 + + 112 NaN NaN 99428.9 NaN 6443 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8848 45.151 NaN 130380 35 0 18734 0.262 -1 TTPIPTCPP 9 34 492.24647619306256 NaN 0 492.2614440917969 PEAK HCD FTMS 0 0 0 8843 13379.3681640625 0.7661479110999369 7 -0.20928192138671875 5 Carbamidomethyl (C) _TTPIPTC(Carbamidomethyl (C))PP_ ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;TULP4-FNDC1|1|fusion 6.723162845929126 0.26266733336404485 1 AP 2 -1 7.9588 0 0 0.81007 0 0 131.066045808242 680.3005187093573 811.3665645175993 0 0 0 0 0 0 0 0 0 AP 0.81007 - 6 + NaN NaN 100738.1 NaN 6444 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8849 45.154 NaN 149220 35 0 31137 0.261 -1 NPDEFYYKM 9 42 611.7579431388173 1221.5013333444344 2 611.7579956054688 MULTI HCD FTMS 0 0 0 8843 40778.0234375 0.365393093972119 12 -0.35113525390625 6 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 20.580933911654288 0.18254163597178805 1 NPDE{M(Oxidation (M))|F}Y 6 -1 39.117 0 0 3.2024 0 0 0 453.1814058893188 453.1814058893188 12.919562702124452 0 0 0 0 0.4247425010840047 0 0 0 NPDE{M(Oxidation (M))|F}Y 3.2024 + + 22 + NaN NaN 107171.5 NaN 6445 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8850 45.157 NaN 88057 35 0 14504 0.262 + 7067 FQSRQDVL 8 34 496.76155251055127 991.5085520879026 2 496.76104736328125 MULTI HCD FTMS 0 0 0 8843 24653.28125 0.3938596919311821 -2 0.052669525146484375 7 Unmodified _FQSRQDVL_ ENSG00000172817|ENST00000310193|CYP7B1 6.723162845929126 0.5320176132289695 1 V{I|L} 2 6 20.969 0 0 2.1149 0 0 761.3451375435649 0 761.3451375435649 0 17.870156338638594 0 0 0 0 0 0 0 + V{I|L} 2.1149 + + 4 NaN NaN 99580.7 NaN 6446 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8851 45.161 NaN 85051 35 0 9827.8 0.261 -1 0 36 500.2334501209582 499.2261736543582 1 500.2354431152344 MULTI HCD FTMS 0 0 0 8843 25650.119140625 0.2611617451683472 -4 0.09864425659179688 8 NaN NaN 1 DP{[TV]|[{I|L}S]} 4 -1 17.435 0 0 3.4924 0 0 69.01985759166134 0 69.01985759166134 0 2.8309188673222963 0 0 0 0 0 0.4247425010840047 0 DP{[TV]|[{I|L}S]} 3.4924 - 8 + NaN NaN 100692.3 NaN 6447 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8852 45.164 NaN 16539 35 0 4730.2 0.261 + 15016 LLLQVLEENLG 11 17 620.8594360351562 NaN 0 620.8594360351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LLLQVLEENLG_ REV__ENST00000495954.5_1_3:159557968-159614560:+|nuORF 0.9622753412299311 0.33939044544643376 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93014.1 NaN 6448 2402 8843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8854 45.169 NaN 382900 35 0 82983 0.327 -1 0 48 582.7696513906718 1163.5247498481435 2 582.76953125 MULTI HCD FTMS 0 0 0 8853 218036.15625 1 0 0 1 NaN NaN 1 ESTSVS{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 68.058 0 0 5.8493 0 0 337.176923775681 0 337.176923775681 0 32.4797868503488 0 0 0 3 0 2.610924374808178 0 ESTSVS{[MS]|[{M(Oxidation (M))|F}A]} 5.8493 - 525 + NaN NaN 143239.2 NaN 6449 2403 8853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8855 45.173 NaN 223440 35 0 26261 0.261 + 13927 KYQPRIAVF 9 67 561.3269918161378 1120.6394306990755 2 561.3267822265625 MULTI HCD FTMS 0 0 0 8853 135235.609375 0.24181688512967414 9 -0.2619972229003906 2 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 48.345845343767074 0.03388484103555672 1 KYQ 3 6 33.06 0 0 2.9501 0 0 0 698.3990732557866 698.3990732557866 1.18308654049315 0 0 0 0 0.2614393726401688 0 0 0.4247425010840047 + KYQ 2.9501 + + 265 + NaN NaN 124722.6 NaN 6450 2403 8853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8856 45.177 NaN 110800 35 0 6774 0.261 + 16309 LQYKGQAGAL 10 53 524.7929251212918 1047.5712973093835 2 524.7926635742188 MULTI HCD FTMS 0 0 0 8853 28648.0234375 0.16240230808592718 5 -0.14502334594726562 3 Unmodified _LQYKGQAGAL_ ENSG00000143374|ENST00000369064|TARS2;nc|ENSG00000143374|Q9BW92-2|TARS2 13.90604991867851 0.3810395177745597 1 {I|L}PY 3 8 23.456 0 0 2.239 0 0 0 671.3560885065061 671.3560885065061 13.929993723234515 0 0 0 0 0.4247425010840047 0 0 0 {I|L}PY 2.239 - 63 + NaN NaN 92701.9 NaN 6451 2403 8853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8857 45.18 NaN 88409 35 0 12542 0.261 + 20578 PEGSPEPEL 9 45 477.7244312182782 953.4343095033564 2 477.7240905761719 MULTI HCD FTMS 0 0 0 8853 37009.609375 0.5919786353199394 -3 0.0856781005859375 4 Unmodified _PEGSPEPEL_ REV__ENSG00000167522|ENST00000301030|ANKRD11;REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF 15.847184025352803 0.2234401846867398 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 100268.9 NaN 6452 2403 8853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8858 45.184 NaN 100160 35 0 9255.3 0.261 + 24967 RYTIVQQQI 9 47 574.8247720416651 1147.6349911501302 2 575.3269653320312 MULTI HCD FTMS 0 0 0 8853 23777.7890625 0.2300654670831125 7 -0.20593643188476562 5 Unmodified _RYTIVQQQI_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 33.4449034751529 0.0954363425218424 1 VQQQ{I|L} 5 4 54.068 0 0 4.7113 0 0 533.2959966900315 0 533.2959966900315 0 41.58870936703728 0 0 0 1.610924374808178 0 0 0 + VQQQ{I|L} 4.7113 + + 131 NaN NaN 109059 NaN 6453 2403 8853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8860 45.189 NaN 685240 35 0 74096 0.326 + 25186 SANLEEVTM 9 67 505.22895669502753 1008.4433604568551 2 505.2289123535156 MULTI HCD FTMS 0 0 0 8859 316183.5625 0.8036277278052462 -1 0.01970672607421875 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 128.93241758739586 0.0006697181619526092 1 {[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F} 9 0 + 94.377 0 0 9.3586 9.3586 96.776 0 0 0 22.87356322102582 78.06093158795967 22.87356322102582 24.010234424404686 0 2.6237125054200234 0 1.416386562212267 1.4802046884880937 + + {[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F};{[SA]|[TG]}GG{I|L}EEVT{M(Oxidation (M))|F};[PS][PS]T{[CA]|SS}VT{M(Oxidation (M))|F} 9.3586;6.9777;3.4734 +;-;- + 503 NaN NaN 176568 NaN 6454 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8861 45.193 NaN 607980 35 0 205190 0.261 + 25819 SLPTNRYNVVF 11 46 437.23468217668506 1308.6822171302551 3 437.2344970703125 MULTI HCD FTMS 0 0 0 8859 181620.953125 0.7715537895625112 2 -0.06595230102539062 2 Unmodified _SLPTNRYNVVF_ ENST00000561691.5_1_15:43691337-43697409:+|nuORF 9.764250979337305 0.37200617284565546 1 V{M(Oxidation (M))|F} 2 9 30.969 0 0 2.3664 0 0 1044.535031553954 0 1044.535031553954 0 25.48455006504028 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3664 + + 12 + NaN NaN 174976.2 NaN 6455 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8862 45.197 NaN 330090 35 0 58886 0.261 + 13407 KYPENDLFRKL 11 53 474.9296036255803 1421.7669814769408 3 474.9290771484375 MULTI HCD FTMS 0 0 0 8859 143299 1 0 0 3 Unmodified _KYPENDLFRKL_ ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 28.270515756011903 0.21249163100647533 1 KY[EP][DN]{I|L}{M(Oxidation (M))|F} 8 3 29.988 0 0 2.1092 0 0 0 412.26569544010005 412.26569544010005 22.998081742177057 0 0 0 0 0.8807196863200843 0 0 0 + KY[EP][DN]{I|L}{M(Oxidation (M))|F} 2.1092 + + 20 + NaN NaN 132791 NaN 6456 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8863 45.2 NaN 226790 35 0 47079 0.261 + 7340 FVDDTNVYR 9 36 564.7690139833837 1127.5234750335674 2 564.76953125 MULTI HCD FTMS 0 0 0 8859 88921.0546875 0.6248492349286808 2 -0.06595230102539062 4 Unmodified _FVDDTNVYR_ ENSG00000174231|ENST00000304992|PRPF8 10.073929032068715 0.27331982688540024 1 D{NN|[MP]|[D{I|L}]|[EV]} 3 7 19.705 0 0 1.7476 0 0 766.3608716341939 0 766.3608716341939 0 17.486512420283233 0 0 0 0.9247425010840047 0 0 0 D{NN|[MP]|[D{I|L}]|[EV]} 1.7476 - 12 NaN NaN 114720.4 NaN 6457 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8864 45.203 NaN 134990 35 0 22456 0.261 -1 RYLSPKYIKMF 11 41 487.93555575279356 1460.7848378585807 3 487.9353942871094 MULTI HCD FTMS 0 0 0 8859 41401.96484375 0.12994743940267034 48 -1.3475265502929688 5 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 14.170726826480097 0.3336124043171337 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.06 0 0 1295.7393189150243 0 1295.7393189150243 0 -2.4742501084004687 -2.4742501084004687 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.06 + + 12 + NaN NaN 103725.2 NaN 6458 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8865 45.207 NaN 419740 35 0 29562 0.261 + 6869 FPTVQHQEL 9 85 549.782685210355 1097.55081748751 2 549.7823486328125 MULTI HCD FTMS 0 0 0 8859 75973.71875 0.13453960966696016 -3 0.069061279296875 6 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 103.82355648334675 0.003950725192926219 1 {I|L}MTVQD 6 6 62.431 0 0 5.6883 0 0 0 407.2032869928344 407.2032869928344 15.471967077050621 0 0 0 0 1.024227503252014 1.3010299956639813 1.110924374808178 0.6694451763165201 {I|L}MTVQD 5.6883 - 1333 + NaN NaN 154726 NaN 6459 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8866 45.21 NaN 38520 35 0 5301.5 0.261 + 15226 LNYANVKHQI 10 23 600.3302654614056 1198.645977989611 2 600.3294677734375 MULTI HCD FTMS 0 0 0 8859 12599.322265625 0.013502607915150835 71 -1.6584587097167969 7 Unmodified _LNYANVKHQI_ REV__ENSG00000183091|ENST00000397345|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant 3.2813086475875832 0.45793521633868084 1 HQ{I|L} 3 -1 26.198 0 0 2.1856 0 0 802.4317494123062 0 802.4317494123062 0 26.197887582883936 0 0 0 0 0 0 0 HQ{I|L} 2.1856 + + 4 NaN NaN 88476.2 NaN 6460 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8867 45.213 NaN 32582 35 0 4830.7 0.263 + 20887 PIVFKCGF 8 31 455.74696334358816 NaN 0 455.8927917480469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _PIVFKCGF_ REV__ENSG00000179151|ENST00000315127|EDC3 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102675 NaN 6461 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8868 45.217 NaN 19437 35 0 7468.3 0.261 + 26639 SWRRGHFHR 9 10 619.8235019360617 NaN 0 620.2587890625 PEAK HCD FTMS 0 0 0 8859 3627.5859375 0.5521066387639368 -1 0.01970672607421875 9 Unmodified _SWRRGHFHR_ ENSG00000085514|ENST00000198536|PILRA;ENST00000474013.1_1_7:99971734-99973868:+|nuORF;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-2|PILRA;nc|ENSG00000085514|Q9UKJ1-3|PILRA;nc|ENSG00000085514|Q9UKJ1-4|PILRA 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89080.1 NaN 6462 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8869 45.22 NaN 21798 35 0 5617.3 0.261 + -1 KRQRQMHFM 9 14 647.3186259816997 NaN 0 647.3182373046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Oxidation (M) _KRQRQM(Oxidation (M))HFM(Oxidation (M))_ REV__ENSG00000067606|ENST00000378567|PRKCZ;REV__ENSG00000163558|ENST00000295797|PRKCI;REV__ENST00000392722.3_1_X:100793145-100793415:-|nuORF;REV__ENST00000472017.1_1_1:2100551-2103025:+|nuORF;REV__ENST00000479263.5_1_1:2075906-2116445:+|nuORF;REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF;REV__nc|ENSG00000067606|Q05513-2|PRKCZ;REV__nc|ENSG00000067606|Q05513-3|PRKCZ 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99932.2 NaN 6463 2404 8859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8871 45.225 NaN 411510 35 0 51165 0.327 + 7232 FSSTGLCLLT 10 67 521.2681011819407 NaN 0 521.2552490234375 PEAK HCD FTMS 0 0 0 8870 10326.05078125 0.5189779107375011 -9 0.2470550537109375 1 Unmodified _FSSTGLCLLT_ sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1 13.90604991867851 0.3282826376286837 1 CSTGE 5 7 24.508 0 0 2.3554 0 0 131.12063495269336 429.2242525690063 560.3448875216997 0 0 0 0 0 0 0 0.805462187404089 0 CSTGE 2.3554 - 160 + NaN NaN 142898 NaN 6464 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8872 45.229 NaN 215140 35 0 25855 0.261 + 18342 MPHVQDPSL 9 50 512.2499578824388 1022.4853628316777 2 512.2498779296875 MULTI HCD FTMS 0 0 0 8870 130044.890625 1 0 0 2 Unmodified _MPHVQDPSL_ ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF 60.07390631473393 0.0174780869009295 1 QDPS{I|L} 5 4 58.488 0 0 5.7201 0 0 464.21922499824376 0 464.21922499824376 0 44.675390846596486 0 0 0 1.9247425010840047 0 0.3807196863200844 0.3494850021680094 + QDPS{I|L} 5.7201 + + 252 NaN NaN 116553.9 NaN 6465 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8873 45.233 NaN 264610 35 0 30755 0.261 + 15958 LPPVWESVT 9 59 514.2754653209413 1026.5363777086825 2 514.2749633789062 MULTI HCD FTMS 0 0 0 8870 85809.7421875 0.8620392986083473 1 -0.02964019775390625 3 Unmodified _LPPVWESVT_ ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;nc|ENSG00000173805|P54257|HAP1 16.942295170755138 0.21397866736869717 1 {I|L}P 2 7 33.188 0 0 3.233 0 0 0 813.382042595738 813.382042595738 20.74031267727719 0 0 0 0 0 1.5228787452803376 0 0 + {I|L}P 3.233 + + 48 + NaN NaN 123212.3 NaN 6466 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8874 45.236 NaN 64590 35 0 11821 0.261 + 11905 KFIDTTSKF 9 40 543.7954035606278 1085.5762541880556 2 543.7948608398438 MULTI HCD FTMS 0 0 0 8870 19246.916015625 0.3271144519722625 20 -0.571990966796875 4 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 12.174745833636585 0.2551692358394414 1 K{M(Oxidation (M))|F}{I|L}D 4 5 36.23 0 0 3.3374 0 0 0 579.2762545221311 579.2762545221311 17.64645333192 0 0 0 0 0.3807196863200844 0 0.3494850021680094 0 + K{M(Oxidation (M))|F}{I|L}D 3.3374 + + 23 + NaN NaN 100312 NaN 6467 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8875 45.24 NaN 51167 35 0 6408.1 0.261 -1 YPESESIMM 9 27 559.7226337663805 NaN 0 559.7220458984375 PEAK HCD FTMS 0 0 0 8870 22840.068359375 0.9941587161247405 1 -0.02964019775390625 5 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 10.823927491677226 0.2427956001690155 1 T{M(Oxidation (M))|F} 2 -1 15.969 0 0 1.4291 0 0 63.99794687982246 802.3269137018186 866.3248605816411 0 0 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 1.4291 - 4 + NaN NaN 96317.2 NaN 6468 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8876 45.243 NaN 107200 35 0 17818 0.261 + 24915 RYSEYAEEF 9 29 597.2592815121316 1192.504010091063 2 597.2590942382812 MULTI HCD FTMS 0 0 0 8870 43654.41796875 0.38305119939542825 -3 0.08902740478515625 6 Unmodified _RYSEYAEEF_ ENSG00000139505|ENST00000381801|MTMR6 33.4449034751529 0.0954363425218424 1 YAEE{M(Oxidation (M))|F} 5 4 51.766 0 0 4.3409 0 0 535.23832900215 0 535.23832900215 0 41.308422131034845 0 0 0 1.7302046884880937 0 0 0 + YAEE{M(Oxidation (M))|F} 4.3409 + + 93 NaN NaN 112296.7 NaN 6469 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8877 45.246 NaN 32006 35 0 3185 0.261 + 22435 QQALSTVFEEH 11 25 644.8093663456235 NaN 0 645.2457275390625 PEAK HCD FTMS 0 0 0 8870 4799.24267578125 0.21108306410469296 -5 0.14169692993164062 7 Unmodified _QQALSTVFEEH_ REV__ENSG00000085872|ENST00000546361|CHERP 0.9622753412299311 0.33939044544643376 1 Y 1 -1 6.9897 0 0 0.54285 0 0 405.3176940176157 716.2036226861936 1121.5213167038094 0 0 0 0 0 0 0 0 0 Y 0.54285 - 3 + NaN NaN 107974.5 NaN 6470 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8878 45.25 NaN 14444 35 0 4159.1 0.261 + -1 DMTVIGIDHLH 11 15 633.8114946769706 NaN 0 633.8113403320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _DM(Oxidation (M))TVIGIDHLH_ REV__ENSG00000093072|ENST00000399837|ADA2 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102873 NaN 6471 2405 8870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8880 45.255 NaN 771600 35 0 64325 0.326 + 12324 KMPKFKMPSF 10 98 419.55565402834554 1255.6451326852366 3 419.5557556152344 MULTI HCD FTMS 0 0 0 8879 354645.5625 0.9348717677928988 -3 0.08565902709960938 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 74.30644344067612 0.012482583535880016 1 K{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 73.013 0 0 5.8148 5.8148 86.048 0 0 0 50.84630327004689 16.53212513775344 16.53212513775344 7.302046884880937 0 2.3143265708843046 0 0.3494850021680094 0 + + K{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{M(Oxidation (M))|F}A[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}E[K{I|L}][YV][KQ];[KP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}A[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 5.8148;5.2333;1.4755;0.84226;0.80212 +;-;-;-;- + 377 + NaN NaN 207334 NaN 6472 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8881 45.259 NaN 706160 35 0 72237 0.261 + 22863 QYNPKFQTL 9 82 569.7981026151975 1137.581652297195 2 569.7979736328125 MULTI HCD FTMS 0 0 0 8879 248356.640625 0.502829097279758 4 -0.12027740478515625 2 Unmodified _QYNPKFQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 118.0683919894846 0.0016252157255221692 1 [YQ]NPK{M(Oxidation (M))|F}QT{I|L} 9 0 + 57.229 0 0 5.0308 5.0308 86.33 0 0 0 28.164526656235232 22.75548603355002 22.75548603355002 9.208187539523749 0 1.3441876774005248 1.0969100130080565 1.5545970543767123 0.2614393726401688 + + [YQ]NPK{M(Oxidation (M))|F}QT{I|L};[YQ]GGPK{M(Oxidation (M))|F}QT{I|L};[YQ]NPK{M(Oxidation (M))|F}[AG]T{I|L};[YQ]GGPK{M(Oxidation (M))|F}[AG]T{I|L};[YQ]NPK[Q{I|L}][{M(Oxidation (M))|F}T];[YQ]GGPK[Q{I|L}][{M(Oxidation (M))|F}T];T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[SG]K{M(Oxidation (M))|F}QT{I|L};[YQ]VV[KP]N[YQ] 5.0308;4.2213;4.2213;3.4157;2.7123;1.9028;0.84357;0.42489 +;-;-;-;-;-;-;- + 816 + NaN NaN 200365 NaN 6473 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8882 45.263 NaN 211540 35 0 19619 0.261 + 34643 YPSEQEKALL 10 67 589.3085918487645 1176.602630764329 2 589.3084716796875 MULTI HCD FTMS 0 0 0 8879 113533.390625 0.3984020464297961 6 -0.17633819580078125 3 Unmodified _YPSEQEKALL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 66.68293810318366 0.021515761494065467 1 YPSEQEKA{I|L}{I|L} 10 0 + 71.723 0 0 6.0958 6.0958 87.364 0 0 0 17.720384319171387 12.926740567922437 12.926740567922437 9.164539485499255 0 2.941962823435958 1.5228787452803376 0.3252574989159953 0 + + YPSEQEKA{I|L}{I|L};YPSE[AG]EKA{I|L}{I|L} 6.0958;5.3169 +;- + 659 + NaN NaN 109775.6 NaN 6474 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8883 45.266 NaN 194950 35 0 25394 0.261 + 1187 AYLHTTTTF 9 54 527.7638140972006 1053.513075261201 2 527.7635498046875 MULTI HCD FTMS 0 0 0 8879 99818.6875 0.5569532673859474 3 -0.09061431884765625 4 Unmodified _AYLHTTTTF_ ENSG00000108846|ENST00000285238|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3 57.47134341890925 0.0211188941628804 1 TT{M(Oxidation (M))|F} 3 6 48.94 0 0 4.6454 0 0 686.3395252912125 0 686.3395252912125 0 34.00174309593268 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + TT{M(Oxidation (M))|F} 4.6454 + + 79 NaN NaN 115679.8 NaN 6475 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8884 45.269 NaN 26695 35 0 4501.3 0.261 + -1 VCVCHLWASF 10 18 639.7912845566211 1277.5680161800422 2 639.7910766601562 MULTI HCD FTMS 0 0 0 8879 20536.5859375 0.362415478178999 2 -0.05936431884765625 5 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 1.6526216038709556 0.46655611578153744 1 TNS{M(Oxidation (M))|F} 4 -1 31.938 0 0 2.4999 0 0 810.3620472638687 0 810.3620472638687 0 31.938200260161125 0 0 0 0 0 0 0 TNS{M(Oxidation (M))|F} 2.4999 - 8 NaN NaN 93328.1 NaN 6476 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8885 45.273 NaN 36628 35 0 5947.2 0.261 -1 VMSQALKATF 10 25 556.2940757611307 1110.5735985890612 2 556.293701171875 MULTI HCD FTMS 0 0 0 8879 27874.55078125 0.08022221056043492 38 -1.0829048156738281 6 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 10.799506525563784 0.4100970765206026 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.98 0 0 945.4946781562472 0 945.4946781562472 0 2.5257498915995313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.98 + + 6 + NaN NaN 102521.4 NaN 6477 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8886 45.276 NaN 52867 35 0 4919.8 0.261 + 29824 VEQQRQFLP 9 29 572.8091126199832 1143.6036723067664 2 572.8091430664062 MULTI HCD FTMS 0 0 0 8879 16735.78515625 0.4832999748330674 3 -0.09061431884765625 7 Unmodified _VEQQRQFLP_ REV__ENSG00000186453|ENST00000295150|FAM228A 3.944395688203298 0.32111559684428237 1 E{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.91444 0 0 780.4488392560562 0 780.4488392560562 0 10.45757490560675 0 0 0 0 0 0 0 E{[ES]|[DT]|[{I|L}C]} 0.91444 - 1 NaN NaN 90992 NaN 6478 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8887 45.279 NaN 26049 35 0 8186.3 0.261 -1 RHCQLWCLV 9 9 607.8020622646515 1213.5895715961028 2 607.8013916015625 MULTI HCD FTMS 0 0 0 8879 10062.345703125 0.4905687847590739 1 -0.03626251220703125 8 Carbamidomethyl (C) _RHC(Carbamidomethyl (C))QLWCLV_ ENST00000470364.5_1_1:38335671-38338691:-|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91571.6 NaN 6479 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8888 45.282 NaN 116360 35 0 24360 0.261 + 31168 VVAPPGVVVSR 11 31 540.3322634887161 1078.649974044232 2 540.3319091796875 MULTI HCD FTMS 0 0 0 8879 28586.703125 0.5690377571088742 -2 0.06595230102539062 9 Unmodified _VVAPPGVVVSR_ ENSG00000145191|ENST00000648915|EIF2B5;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENST00000491144.5_1_3:183853173-183855624:+|nuORF 8.155526934196011 0.3831532958467648 1 VVA 3 8 38.952 0 0 3.6112 0 0 0 806.4529292192539 806.4529292192539 30.368931070804592 0 0 0 0 0.8494850021680094 2 0 0 + VVA 3.6112 + + 11 + NaN NaN 101220.6 NaN 6480 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8889 45.286 NaN 23090 35 0 4317.2 0.261 -1 KMPKFKMPSF 10 21 628.8297386341821 NaN 0 628.8291015625 PEAK HCD FTMS 0 0 0 8879 18384.615234375 1 0 0 10 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78405.4 NaN 6481 2406 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8891 45.291 NaN 192010 35 0 15641 0.327 + -1 FSFGKMKDE 9 57 552.7541181452374 1103.4936833572747 2 552.7684936523438 MULTI HCD FTMS 0 0 0 8890 4769.69091796875 0.5707577431844412 1 -0.023101806640625 1 Oxidation (M) _FSFGKM(Oxidation (M))KDE_ REV__ENSG00000189376|ENST00000276704|C8orf76;REV__nc|nan|Q96EF9|ZHX1-C8orf76 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}SVHMVT{[{M(Oxidation (M))|F}H]|[RQ]} 9 -1 + 50.812 0 0 4.6047 4.6047 83.386 0 0 0 17.83645560927063 4.762036441594191 4.762036441594191 5.969100130080562 0 0 0 1 0 {M(Oxidation (M))|F}SVHMVT{[{M(Oxidation (M))|F}H]|[RQ]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHVSE;{[RE]|[WV]}[C(Carbamidomethyl (C))R]VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}WHMVT{[{M(Oxidation (M))|F}H]|[RQ]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]EVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHWE;{[RE]|[WV]}[C(Carbamidomethyl (C))R]VQQE;[HT]{M(Oxidation (M))|F}SEVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]EVQQE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}[PG]VTH{M(Oxidation (M))|F} 4.6047;4.0637;4.043;4.0176;3.5914;3.4767;3.2293;3.0458;2.7777;2.6166 -;-;-;-;-;-;-;-;-;- 348 + NaN NaN 104287.1 NaN 6482 2407 8890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8892 45.295 NaN 217160 35 0 69708 0.261 -1 MHCDGGISMIL 11 39 617.766732877739 1233.5189128222778 2 617.7667846679688 MULTI HCD FTMS 0 0 0 8890 101942.390625 0.784671143070534 4 -0.11370468139648438 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 13.042465956692817 0.3434429782671734 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 44.993 0 0 3.6475 0 0 713.2628040998062 0 713.2628040998062 0 41.89387834276005 0 0 0 0.9247425010840047 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.6475 - 17 NaN NaN 118236.9 NaN 6483 2407 8890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8893 45.299 NaN 263500 35 0 61464 0.264 + -1 LRQRKDKMR 9 51 416.2435305890866 1245.70876236746 3 416.24359130859375 MULTI HCD FTMS 0 0 0 8890 56021.40234375 0.10169763789685218 52 -1.3082427978515625 3 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 4.5288652416199255 0.31668488241058723 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1724 0 0 1080.629628311599 0 1080.629628311599 0 0.6246936830414995 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1724 + + 12 + NaN NaN 126057.1 NaN 6484 2407 8890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8894 45.302 NaN 142680 35 0 12608 0.261 + 18007 MLIEKDPSL 9 39 531.280913035038 1060.547273136876 2 531.2808837890625 MULTI HCD FTMS 0 0 0 8890 49270.4453125 0.2770969565199816 -12 0.32935333251953125 4 Oxidation (M) _M(Oxidation (M))LIEKDPSL_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 43.77239144664712 0.04802738721622131 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}E{I|L} 9 4 + 60.881 0 0 5.7405 5.7405 84.776 0 0 0 12.036655871178041 60.88099678598198 12.036655871178041 4.547509540478032 0 0.3494850021680094 2 0.805462187404089 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}[PS]{I|L} 5.7405;5.3117 -;+ + 57 NaN NaN 110890.3 NaN 6485 2407 8890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8895 45.306 NaN 42504 35 0 6913.6 0.261 -1 RYQQWMERF 9 23 453.88002880038823 1358.6182570013648 3 453.8807067871094 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 3.876331618118854 0.3216315731786804 1 W 1 -1 11.237 0 0 0.8271 0 0 575.2783654992148 594.2366427057249 1169.5150082049397 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.8271 + + 1 + NaN NaN 88889.2 NaN 6486 2407 8890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8896 45.309 NaN 34603 35 0 3430.5 0.261 + 16637 LWAVLYGHQL 10 29 600.330134843706 NaN 0 600.3300170898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LWAVLYGHQL_ REV__ENSG00000132259|ENST00000379936|CNGA4;REV__nc|ENSG00000132259|Q8IV77-2|CNGA4 3.944395688203298 0.33680843299986807 1 QH 2 -1 10.969 0 0 0.91512 0 0 131.09618091004342 799.4090670221311 930.5052479321746 0 0 0 0 0 0 0 0 0 QH 0.91512 - 5 + NaN NaN 89288.3 NaN 6487 2407 8890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8898 45.314 NaN 476310 35 0 109830 0.327 + 15525 LPDPGSPRL 9 41 476.2666221094865 950.518691285773 2 476.2662353515625 MULTI HCD FTMS 0 0 0 8897 248225.9375 0.35965270770395175 -5 0.14502334594726562 1 Unmodified _LPDPGSPRL_ ENSG00000188522|ENST00000388995|FAM83G 49.55428908609986 0.03219431099695407 1 {I|L}PDPGS 6 3 77.484 0 0 8.1518 0 0 0 381.22553430728755 381.22553430728755 66.78116218005592 0 0 0 0 1.2614393726401687 1.6989700043360187 0.8494850021680094 0 + {I|L}PDPGS 8.1518 + + 34 + NaN NaN 163817.7 NaN 6488 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8899 45.318 NaN 263530 35 0 19512 0.261 -1 0 51 500.2334501209582 499.2261736543582 1 500.2350769042969 MULTI HCD FTMS 0 0 0 8897 94133.515625 0.9584389485552252 2 -0.0609130859375 2 NaN NaN 1 DP{[TV]|[{I|L}S]} 4 -1 24.253 0 0 4.858 0 0 69.01921672252071 0 69.01921672252071 0 15.300084529637983 0 0 0 0 0 0.805462187404089 0 DP{[TV]|[{I|L}S]} 4.858 - 19 + NaN NaN 141344.3 NaN 6489 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8900 45.322 NaN 182860 35 0 29660 0.261 + -1 FQIADEYKM 9 46 580.7691841557408 1159.5238153782816 2 581.2877807617188 MULTI HCD FTMS 0 0 0 8897 3854.2421875 0.32718624869774 -1 0.023101806640625 3 Oxidation (M) _FQIADEYKM(Oxidation (M))_ REV__ENSG00000184489|ENST00000521578|PTP4A3 11.640296217721598 0.25978676193971967 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[VS]VQYQ 9 -1 38.35 0 0 3.3074 0 0 0 161.01890300336018 161.01890300336018 20.278193816289235 0 0 0 0 0 2 0 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[VS]VQYQ 3.3074 - 252 NaN NaN 105770.5 NaN 6490 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8901 45.325 NaN 123560 35 0 33031 0.263 + 2629 DVASVIVTK 9 37 466.27666215147406 930.5387713697481 2 466.27630615234375 MULTI HCD FTMS 0 0 0 8897 63330.59765625 0.9157077395519804 1 -0.03125 4 Unmodified _DVASVIVTK_ ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54 28.494509381512117 0.11816142465008336 1 [DV]AS[{I|L}V]V[KT] 9 0 + 56.105 0 0 6.0293 6.0293 93.009 0 0 0 51.5006060229387 4.762036441594191 4.762036441594191 56.10469979270057 0 1.3494850021680094 2 0.4247425010840047 0 + + [DV]AS[{I|L}V]V[KT] 6.0293 + + 30 + NaN NaN 126556.5 NaN 6491 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8902 45.329 NaN 120520 35 0 13521 0.261 + 13928 KYQPRIAVF 9 50 561.3269918161378 1120.6394306990755 2 561.326904296875 MULTI HCD FTMS 0 0 0 8897 75939.1953125 0.13578804986785828 14 -0.40067291259765625 5 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 24.020572477871973 0.15282392193088168 1 KYQ 3 6 32.58 0 0 2.9073 0 0 0 698.4003055004649 698.4003055004649 13.996498648046142 0 0 0 0 0.6382104921644451 0 0 0 + KYQ 2.9073 + + 48 + NaN NaN 95974.5 NaN 6492 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8903 45.332 NaN 78685 35 0 16677 0.263 -1 TYMDRVFKQF 10 31 450.88816125490916 1349.6426543649275 3 450.8880615234375 MULTI HCD FTMS 0 0 0 8897 14743.1533203125 0.3782368752184691 -4 0.12531661987304688 6 Oxidation (M) _TYM(Oxidation (M))DRVFKQF_ ENSG00000158201|ENST00000289119|ABHD3 7.945399516374404 0.4332474418965133 1 TY 2 -1 45.217 0 0 3.3503 0 0 0 1082.5095416613665 1082.5095416613665 29.018637558036673 0 0 0 0 0.4247425010840047 2 0 0 TY 3.3503 + + 10 + NaN NaN 104578.7 NaN 6493 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8904 45.335 NaN 56751 35 0 8475.2 0.261 + 32910 YADPTKRLEL 10 28 603.3297624982324 NaN 0 603.329345703125 PEAK HCD FTMS 0 0 0 8897 29630.48828125 0.9247071358344807 1 -0.03125 7 Unmodified _YADPTKRLEL_ ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5 11.494710602746466 0.33034640988000663 1 AD 2 8 19.464 0 0 1.6157 0 0 163.05404471725961 852.4952906242943 1015.5493353415538 0 0 0 0 0 1 0 0 0 + AD 1.6157 + + 7 + NaN NaN 86774.2 NaN 6494 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8905 45.34 NaN 49069 35 0 7090.7 0.261 + 4378 EWSHSRACTVL 11 28 644.8093663456235 NaN 0 644.8090209960938 PEAK HCD FTMS 0 0 0 8897 14875.6318359375 0.6542686337301873 -2 0.05936431884765625 8 Unmodified _EWSHSRACTVL_ REV__ENST00000554116.5_1_16:89989809-89998148:+|nuORF 2.735195868890462 0.3343611804837492 1 Y 1 -1 5.4846 0 0 0.42595 0 0 661.353155443397 460.15912805728755 1121.5122835006846 0 0 0 0 0 0 0 0 0 Y 0.42595 - 1 + NaN NaN 93267.4 NaN 6495 2408 8897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8907 45.345 NaN 731600 35 0 77127 0.327 + 25187 SANLEEVTM 9 65 505.22895669502753 1008.4433604568551 2 505.228759765625 MULTI HCD FTMS 0 0 0 8906 341385.25 0.8676815789996227 4 -0.11875534057617188 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 133.0521902211835 0.0004198702180815479 1 {I|L}EEVT{M(Oxidation (M))|F} 6 3 70.948 0 0 7.0354 0 0 272.11201674629064 0 272.11201674629064 0 54.2491025745376 0 0 0 2.274227503252014 0 1.055462187404089 0 + {I|L}EEVT{M(Oxidation (M))|F} 7.0354 + + 430 NaN NaN 196949 NaN 6496 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8908 45.35 NaN 342590 35 0 23028 0.261 + 4178 ETSPLTAEKL 10 60 544.7956367122465 1087.576720491293 2 544.7952270507812 MULTI HCD FTMS 0 0 0 8906 172205.671875 0.6165761480700741 -2 0.054351806640625 2 Unmodified _ETSPLTAEKL_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 51.41523569358685 0.07264263333115425 1 K{M(Oxidation (M))|F}CTAE[K{I|L}] 8 5 58.977 0 0 5.4228 0 0 149.10561014396848 0 149.10561014396848 0 26.79342449193868 0 0 0 1.0114393726401687 0 1.3737125054200234 0 K{M(Oxidation (M))|F}CTAE[K{I|L}] 5.4228 - 431 + NaN NaN 141677.4 NaN 6497 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8909 45.353 NaN 505730 35 0 48858 0.261 + 3750 ENKLLHPF 8 74 499.27675354148005 NaN 0 499.2872619628906 PEAK HCD FTMS 0 0 0 8906 5418.90478515625 0.6899458508442543 3 -0.085723876953125 3 Unmodified _ENKLLHPF_ ENSG00000119979|ENST00000361432|DENND10;ENST00000448258.6_1_10:120867502-120877057:+|nuORF;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1 15.847184025352803 0.3871869056683869 1 VPS 3 7 22.435 0 0 2.2513 0 0 131.07333889513376 579.2885225885374 710.3618614836712 0 0 0 0 0 0 0 0.7742275032520141 0 VPS 2.2513 - 218 + NaN NaN 157011.7 NaN 6498 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8910 45.357 NaN 226820 35 0 28263 0.261 + 31688 VYKTIMEQF 9 53 587.7941420621673 1173.5737311911346 2 587.79443359375 MULTI HCD FTMS 0 0 0 8906 97643.5234375 0.8950588602969032 -1 0.03125 4 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ BAIAP2-TBCD|1|fusion;ENSG00000175866|ENST00000428708|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2 45.739877483867886 0.03899552410870734 1 [YV]K[{I|L}T]{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F} 9 0 + 59.364 0 0 5.0584 5.0584 86.37 0 0 0 16.351971076465475 12.957574905606748 12.957574905606748 9.208187539523749 0 1.3494850021680094 2 0.3807196863200844 0 + + [YV]K[{I|L}T]{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F};[YV]K[{I|L}T]{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}[{I|L}T]EQ{M(Oxidation (M))|F};[YT]YE{[QV]|[N{I|L}]|[RA]|[KV]}KP{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}[{I|L}T]E[AG]{M(Oxidation (M))|F};[YK]V[{I|L}T]{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F};[YV]K[{I|L}T]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}{[DA]|[EG]};[YK]V[{I|L}T]{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}[DN]{I|L}{I|L}Y;[YK]V{M(Oxidation (M))|F}[{I|L}T]EQ{M(Oxidation (M))|F} 5.0584;4.2737;3.8443;3.665;3.0597;2.9922;2.782;2.2076;2.1787;1.7782 +;-;-;-;-;-;-;-;-;- + 372 NaN NaN 121624.1 NaN 6499 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8911 45.36 NaN 343740 35 0 54317 0.261 -1 GRGMGRQASL 10 76 524.7691447976212 NaN 0 524.7861938476562 PEAK HCD FTMS 0 0 0 8906 7992.9033203125 0.3605740137879895 9 -0.25396728515625 5 Oxidation (M) _GRGM(Oxidation (M))GRQASL_ ENST00000332598.6_1_5:177022592-177022790:+|nuORF 22.736283301280096 0.25846987392193327 1 PE 2 -1 17.717 0 0 1.6913 0 0 163.0275997041296 655.3792315921293 818.4068312962588 0 0 0 0 0 0 0 0.6747425010840047 0 PE 1.6913 - 168 + NaN NaN 138196.6 NaN 6500 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8912 45.363 NaN 118390 35 0 13247 0.261 + 25200 SANLFYSDD 9 45 516.2200819786933 1030.4256110241865 2 516.2197875976562 MULTI HCD FTMS 0 0 0 8906 39776.72265625 0.7707560899991946 1 -0.0296630859375 6 Unmodified _SANLFYSDD_ ENSG00000104904|ENST00000602676|OAZ1;ENST00000592787.2_1_19:2271460-2271954:+|nuORF 12.240655878213236 0.2545997876781172 1 {[SA]|[TG]}N{I|L} 4 5 24.737 0 0 2.4007 0 0 0 642.2063425260164 642.2063425260164 -0.2114406948358294 0 -0.2114406948358294 0 0 0.8494850021680094 0 0 0.3054621874040891 + {[SA]|[TG]}N{I|L} 2.4007 + + 20 + NaN NaN 97114.7 NaN 6501 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8913 45.367 NaN 158760 35 0 17348 0.261 -1 RYLSPKYIKMF 11 60 487.93555575279356 1460.7848378585807 3 487.935546875 MULTI HCD FTMS 0 0 0 8906 44373.73828125 0.13927487954096834 53 -1.2850532531738281 7 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 13.534932898082838 0.33915209766063664 1 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 17.664 0 0 1.2092 0 0 744.4273071962745 0 744.4273071962745 0 12.179250024847263 0 0 0 0.9247425010840047 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.2092 + + 58 + NaN NaN 113317.8 NaN 6502 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8914 45.37 NaN 97415 35 0 14865 0.261 + 7341 FVDDTNVYR 9 39 564.7690139833837 1127.5234750335674 2 564.7692260742188 MULTI HCD FTMS 0 0 0 8906 11036.919921875 0.07755655838079219 7 -0.19459152221679688 8 Unmodified _FVDDTNVYR_ ENSG00000174231|ENST00000304992|PRPF8 10.073929032068715 0.27331982688540024 1 [{M(Oxidation (M))|F}V]D 3 6 20.458 0 0 1.8144 0 0 0 763.3373537779611 763.3373537779611 16.478174818886373 0 0 0 0 1 0 0 0 + [{M(Oxidation (M))|F}V]D 1.8144 + + 20 NaN NaN 98704.3 NaN 6503 2409 8906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8916 45.375 NaN 749410 35 0 77639 0.327 + 6870 FPTVQHQEL 9 97 549.782685210355 1097.55081748751 2 549.782470703125 MULTI HCD FTMS 0 0 0 8915 428184.15625 0.7582586477965668 3 -0.08909225463867188 1 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 171.46415876497497 3.0296185862974766E-09 1 {M(Oxidation (M))|F}PTVQHQE{I|L} 9 0 + 98.061 0 0 8.9345 8.9345 89.065 0 0 0 2.3106982151547015 2.3106982151547015 2.3106982151547015 2.3106982151547015 0 2.829689690656103 0 1.6549471895720984 1.3371804965004639 + + {M(Oxidation (M))|F}PTVQHQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQHQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQHQE{I|L};{M(Oxidation (M))|F}PTV[AG]HQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQH[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TV[AG]HQ{I|L}E;{M(Oxidation (M))|F}PTVQH[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TV[AG]HQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQH[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TV[AG]H[AG]E{I|L} 8.9345;8.724;8.6799;8.0956;7.885;7.885;7.8457;7.8409;7.8409;7.0059 +;-;+;-;-;-;-;-;-;- + 2440 + NaN NaN 197860.4 NaN 6504 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8917 45.379 NaN 264720 35 0 64494 0.263 -1 QRQLLCVFVF 10 33 437.2428472031711 NaN 0 437.234375 PEAK HCD FTMS 0 0 0 8915 4678.314453125 0.9268738814561144 2 -0.056060791015625 2 Carbamidomethyl (C) _QRQLLC(Carbamidomethyl (C))VFVF_ ENST00000466781.5_1_22:26861475-26862356:-|nuORF 3.5870582119611467 0.3371142643538189 1 V 1 -1 6.9897 0 0 0.80114 0 0 608.3240770147767 162.05591760806877 770.3799946228454 0 0 0 0 0 0 0 0 0 V 0.80114 + + 5 + NaN NaN 123210.1 NaN 6505 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8918 45.383 NaN 188060 35 0 21687 0.261 + 15959 LPPVWESVT 9 58 514.2754653209413 1026.5363777086825 2 514.2749633789062 MULTI HCD FTMS 0 0 0 8915 64814.1015625 0.6511184071475589 6 -0.16492843627929688 3 Unmodified _LPPVWESVT_ ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;nc|ENSG00000173805|P54257|HAP1 16.942295170755138 0.21397866736869717 1 {I|L}P 2 7 41.198 0 0 4.0133 0 0 0 813.3815690708172 813.3815690708172 24.030899869919434 0 0 0 0 0.5 1.5228787452803376 0 0 + {I|L}P 4.0133 + + 45 + NaN NaN 127602 NaN 6506 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8919 45.386 NaN 185250 35 0 31771 0.261 -1 FPGGKEYLM 9 55 529.2553165177549 1056.4960801023096 2 529.25390625 MULTI HCD FTMS 0 0 0 8915 47665.77734375 0.4529583889426597 -9 0.2552909851074219 4 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 22.736283301280096 0.1639198954644489 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WH]{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F} 8 -1 + 29.332 0 0 2.7763 2.7763 79.194 0 0 0 1.8129528644594544 0.6179681131070751 0.6179681131070751 0.6179681131070751 0 1 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WH]{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WH][WR]E 2.7763;2.7178 -;- 97 NaN NaN 114271.6 NaN 6507 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8920 45.39 NaN 83372 35 0 15014 0.261 + 1133 AYLDLQQI 8 31 482.26088872779206 962.5072245223841 2 482.2604064941406 MULTI HCD FTMS 0 0 0 8915 57853.0234375 0.6047834590959871 -6 0.18622970581054688 5 Unmodified _AYLDLQQI_ ENST00000436520.1_1_X:33059580-33059835:+|nuORF 7.289230182591677 0.5311777711368266 1 AP 2 7 19.464 0 0 2.0222 0 0 0 791.3954760869206 791.3954760869206 0.8804562952784067 0 0 0 0 0 0 0 0 AP 2.0222 - 3 + NaN NaN 106824.1 NaN 6508 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8921 45.393 NaN 59641 35 0 5369.7 0.261 + 118 ADYRPTIKEN 10 37 603.8091410299787 1205.6037291267573 2 603.8092651367188 MULTI HCD FTMS 0 0 0 8915 16903.046875 0.5858792985852896 1 -0.029689788818359375 6 Unmodified _ADYRPTIKEN_ ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C 2.735195868890462 0.4608258780945842 1 E 1 9 5.4846 0 0 0.45492 0 0 325.21110324960733 748.3299654596311 1073.5410687092385 0 0 0 0 0 0 0 0 0 + E 0.45492 + + 7 + NaN NaN 89278.4 NaN 6509 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8922 45.396 NaN 21449 35 0 5089.3 0.262 + 16693 LWVGERMP 8 18 494.2596167109162 986.5046804886324 2 494.2625732421875 MULTI HCD FTMS 0 0 0 8915 10636.29296875 0.6625412918685434 1 -0.029689788818359375 7 Unmodified _LWVGERMP_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80995.5 NaN 6510 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8923 45.4 NaN 52936 35 0 6717.6 0.261 -1 YFGYTALM 8 36 491.2222691242905 980.429985315381 2 491.2229309082031 MULTI HCD FTMS 0 0 0 8915 9437.884765625 0.10958546633019495 43 -1.1705894470214844 8 Oxidation (M) _YFGYTALM(Oxidation (M))_ ENSG00000101337|ENST00000398022|TM9SF4;ENST00000479591.1_1_20:30749036-30753244:+|nuORF 5.760428011301431 0.5334459684533844 1 {I|L}{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.3417 0 0 702.3009702780748 0 702.3009702780748 0 22.95880017344075 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3417 + + 3 + NaN NaN 99233.8 NaN 6511 2410 8915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8925 45.405 NaN 727700 35 0 59654 0.327 + 12325 KMPKFKMPSF 10 88 419.55565402834554 1255.6451326852366 3 419.5556335449219 MULTI HCD FTMS 0 0 0 8924 272529.53125 0.71840787421514 2 -0.0594024658203125 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 53.7980654928069 0.0639768079611429 1 K{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 62.026 0 0 4.9397 4.9397 91.323 0 0 0 40.82765031112271 16.53212513775344 16.53212513775344 62.025537894006646 0 1.957552011530992 0 0.28872548999643577 0 + + K{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 4.9397 + + 475 + NaN NaN 190200.7 NaN 6512 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8926 45.409 NaN 406770 35 0 46420 0.261 + 30240 VISISYGSCI 10 58 521.2681011819407 NaN 0 521.2552490234375 PEAK HCD FTMS 0 0 0 8924 13240.5517578125 0.6654580762626713 -3 0.09060287475585938 2 Unmodified _VISISYGSCI_ ENSG00000205329|ENST00000641740|OR6C3 10.823927491677226 0.33092050725491123 1 CS 2 9 10.261 0 0 0.98613 0 0 131.12026927155858 716.3370008510273 847.4572701225859 0 0 0 0 0 0 0 0.3807196863200844 0 CS 0.98613 - 110 + NaN NaN 154516.7 NaN 6513 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8927 45.413 NaN 226090 35 0 35514 0.261 + 9478 HPWEVMPEL 9 56 569.2734612342365 1136.532369535273 2 569.2734375 MULTI HCD FTMS 0 0 0 8924 70363.3984375 0.16529044454897926 30 -0.8538703918457031 3 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 7.289230182591677 0.29575926068275815 1 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3312773378424 752.3312773378424 22.52574989159953 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 41 + NaN NaN 114461.1 NaN 6514 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8928 45.416 NaN 88362 35 0 12311 0.261 + 24916 RYSEYAEEF 9 33 597.2592815121316 1192.504010091063 2 597.2591552734375 MULTI HCD FTMS 0 0 0 8924 50158.05859375 0.4401182147803642 3 -0.08250045776367188 4 Unmodified _RYSEYAEEF_ ENSG00000139505|ENST00000381801|MTMR6 19.361941925380144 0.1930734562688509 1 AEE{M(Oxidation (M))|F} 4 5 44.24 0 0 3.7099 0 0 698.3013172834 0 698.3013172834 0 40.26084705832169 0 0 0 1.2302046884880937 0 0 0 + AEE{M(Oxidation (M))|F} 3.7099 + + 45 NaN NaN 103740.8 NaN 6515 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8929 45.419 NaN 43290 35 0 6764.2 0.261 -1 ILQERMQEFG 10 21 633.8114946769706 NaN 0 633.8109741210938 PEAK HCD FTMS 0 0 0 8924 17762.0546875 0.8901932976975616 -9 0.2686347961425781 5 Oxidation (M) _ILQERM(Oxidation (M))QEFG_ ENST00000502983.5_3_5:88119720-88180329:-|nuORF 3.2813086475875832 0.33737594360511275 1 {I|L}E 2 -1 14.776 0 0 1.1675 0 0 669.2561940296233 351.2039888971313 1020.4601829267547 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}E 1.1675 - 6 + NaN NaN 83178.8 NaN 6516 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8930 45.423 NaN 30217 35 0 3184.1 0.261 + 33307 YFREVYGTL 9 28 574.2909230826672 NaN 0 574.29150390625 PEAK HCD FTMS 0 0 0 8924 10585.2802734375 0.45111525611702824 13 -0.3660545349121094 6 Unmodified _YFREVYGTL_ tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97725.8 NaN 6517 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8931 45.426 NaN 40633 35 0 10119 0.261 -1 FPESERPEML 10 19 625.7899712422575 1249.5653895513149 2 625.789794921875 MULTI HCD FTMS 0 0 0 8924 14765.7705078125 0.8436904240183352 14 -0.3923835754394531 7 Oxidation (M) _FPESERPEM(Oxidation (M))L_ ENSG00000179950|ENST00000526683|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60 2.498486711656943 0.462078817294651 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85796.9 NaN 6518 2411 8924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8933 45.431 NaN 628200 35 0 48308 0.327 + 26362 SSNLELHSL 9 70 500.258904936529 998.503256939858 2 500.25860595703125 MULTI HCD FTMS 0 0 0 8932 294811.75 0.9155430273806678 -1 0.026371002197265625 1 Unmodified _SSNLELHSL_ ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7 133.0521902211835 0.0004198702180815479 1 {[CA]|SS}GG{I|L}E{I|L}H{[TV]|[{I|L}S]} 10 2 + 85.442 0 0 8.557 8.557 88.998 0 0 0 56.87916549520928 1.8297591317234208 1.8297591317234208 3.2795501485934864 0 2.6861818737241734 0 1.6184151806525389 0 {[CA]|SS}GG{I|L}E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}E{I|L}H{[TV]|[{I|L}S]};{[QV]|[N{I|L}]|[RA]|[KV]}Q{I|L}{[DS]|[MA]|[CV]|TT}PVN;{[QV]|[N{I|L}]|[RA]|[KV]}{[CA]|SS}E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}GP{[DS]|[MA]|[CV]|TT}{I|L}H{[TV]|[{I|L}S]};{[QV]|[N{I|L}]|[RA]|[KV]}[AG]{I|L}{[DS]|[MA]|[CV]|TT}PVN;{[TV]|[{I|L}S]}[NS]E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}{[HG]|PP}{[QG]|[NA]}{[TV]|[{I|L}S]};C(Carbamidomethyl (C))K{I|L}{M(Oxidation (M))|F}{I|L}[YR];{[QV]|[N{I|L}]|[RA]|[KV]}Q{I|L}[NS][VP]D 8.557;8.2285;5.8227;5.6582;5.0702;4.9005;3.8596;3.8389;3.2961;3.1989 -;+;-;-;-;-;-;-;-;- + 656 + NaN NaN 188479.9 NaN 6519 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8934 45.435 NaN 210820 35 0 21576 0.261 + 14069 KYVSINSTL 9 53 512.7870822381161 1023.5596115430322 2 512.78662109375 MULTI HCD FTMS 0 0 0 8932 90153.5234375 0.902339585521156 1 -0.033031463623046875 2 Unmodified _KYVSINSTL_ ENSG00000108021|ENST00000695737|TASOR2 35.61225514009592 0.08548698421724198 1 SN{[TV]|[{I|L}S]}AST{I|L} 8 4 49.418 0 0 4.828 0 0 232.14241225410314 0 232.14241225410314 0 42.405899960517424 0 0 0 0.9247425010840047 0 0.805462187404089 0 SN{[TV]|[{I|L}S]}AST{I|L} 4.828 - 157 NaN NaN 127083.5 NaN 6520 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8935 45.439 NaN 132180 35 0 40419 0.261 -1 MHCDGGISMIL 11 27 617.766732877739 1233.5189128222778 2 617.7667236328125 MULTI HCD FTMS 0 0 0 8932 58311.50390625 0.4488354073683869 9 -0.2639808654785156 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 18.1463463914782 0.2989727007011538 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 49.24 0 0 3.9919 0 0 713.2569447248062 0 713.2569447248062 0 43.75569708000178 0 0 0 0.9247425010840047 0 0.805462187404089 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.9919 - 15 NaN NaN 111479.5 NaN 6521 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8936 45.442 NaN 151560 35 0 9467.5 0.261 + 1577 AYVHMVTHF 9 60 552.7683154465186 1103.5220779598371 2 552.7684326171875 MULTI HCD FTMS 0 0 0 8932 58827.95703125 0.03607778982056457 33 -0.9362831115722656 4 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 74.42276476219924 0.007657080072768255 1 {M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F} 9 2 + 77.017 0 0 6.9792 6.9792 87.738 0 0 0 10.642492736872597 6.46205332875283 6.46205332875283 6.46205332875283 0 2.416386562212267 0 1 0 {M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{[RE]|[WV]}{[QG]|[NA]}MVTH{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHY[HV]{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}QQVM[PA]H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]QQM[PA]H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]QQMH[PA]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][HC][{I|L}T]TH{M(Oxidation (M))|F} 6.9792;6.3936;5.2238;3.8554;3.2707;2.9862;1.9009;1.8802;1.3246 -;+;-;-;-;-;-;-;- + 216 + NaN NaN 97773.8 NaN 6522 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8937 45.446 NaN 470400 35 0 48618 0.261 -1 0 64 521.4836989328788 3643.3349572639518 7 521.7813720703125 MULTI HCD FTMS 0 0 0 8932 3792.34912109375 0.523948910412292 -2 0.056060791015625 5 NaN NaN 1 VYVE[{I|L}T]{[TV]|[{I|L}S]} 8 -1 22.44 0 0 0.61592 0 0 2720.8444623638115 0 2720.8444623638115 0 9.168950068207451 0 0 0 0 0 0.3054621874040891 0 VYVE[{I|L}T]{[TV]|[{I|L}S]} 0.61592 - 181 + NaN NaN 165529.4 NaN 6523 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8938 45.449 NaN 132710 35 0 11770 0.261 + 10491 IPDTENQTL 9 48 515.7559767187819 1029.4974005043637 2 515.755615234375 MULTI HCD FTMS 0 0 0 8932 42250.796875 0.537385656167507 -7 0.2059783935546875 6 Unmodified _IPDTENQTL_ ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217 15.248480904072842 0.22861284681709862 1 NQT{I|L} 4 5 41.23 0 0 4.0049 0 0 555.2542591779312 0 555.2542591779312 0 30.260847058321687 0 0 0 0.8494850021680094 0 0 0.3807196863200844 + NQT{I|L} 4.0049 + + 15 NaN NaN 117577.3 NaN 6524 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8939 45.452 NaN 276940 35 0 36938 0.261 + 28814 TTVEGLITR 9 50 495.2849105262632 988.5552681193265 2 495.28485107421875 MULTI HCD FTMS 0 0 0 8932 98838.84375 0.589022628307341 -2 0.056060791015625 7 Unmodified _TTVEGLITR_ ENSG00000109917|ENST00000227322|ZPR1 51.41523569358685 0.02959097413485123 1 {[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 53.606 0 0 5.4227 5.4227 90.925 0 0 0 28.19984993812689 5.6424927368725974 5.6424927368725974 31.03531276083039 0 1.774227503252014 0 0 0 + + {[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[TV]|[{I|L}S]}TEG{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.4227;2.2832 +;- + 116 + NaN NaN 118614.5 NaN 6525 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8940 45.456 NaN 106720 35 0 11217 0.261 + 9415 HPTWGDEQL 9 47 541.7487211382661 1081.482889343332 2 541.747802734375 MULTI HCD FTMS 0 0 0 8932 48267.78125 1 0 0 8 Unmodified _HPTWGDEQL_ ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1 14.838274106304384 0.23215694253501695 1 EQ{I|L} 3 6 29.693 0 0 2.7456 0 0 693.2855702130875 0 693.2855702130875 0 14.191293077419756 0 0 0 0.3494850021680094 0 0 0 + EQ{I|L} 2.7456 + + 23 NaN NaN 97272.1 NaN 6526 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8941 45.459 NaN 56948 35 0 11399 0.261 -1 RYALQMEQL 9 29 584.2949949494048 1166.5754369656095 2 584.7967529296875 MULTI HCD FTMS 0 0 0 8932 4007.617431640625 0.024480984138127194 -14 0.3936500549316406 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 19.361941925380144 0.1930734562688509 1 [Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F}EQ{I|L} 9 -1 + 59.671 0 0 5.115 5.115 83.545 0 0 0 4.259687322722812 16.478174818886373 4.259687322722812 4.259687322722812 0 0.3807196863200844 1.6989700043360187 0 0 [Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}[AG]{M(Oxidation (M))|F}EQ{I|L};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L} 5.115;4.7499;4.3257;4.3257;3.9606;3.9606;3.175 -;+;-;-;-;-;- + 64 NaN NaN 82324.2 NaN 6527 2412 8932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8943 45.464 NaN 1109200 35 0 254190 0.326 + 15526 LPDPGSPRL 9 56 476.2666221094865 950.518691285773 2 476.266357421875 MULTI HCD FTMS 0 0 0 8942 690182.3125 1 0 0 1 Unmodified _LPDPGSPRL_ ENSG00000188522|ENST00000388995|FAM83G 70.33199760932243 0.0089807860198535 1 {I|L}PDPGS 6 3 86.433 0 0 9.0932 0 0 0 381.2252670099618 381.2252670099618 49.77243781503063 0 0 0 0 1.2302046884880937 1.6989700043360187 1.5994850021680094 0 + {I|L}PDPGS 9.0932 + + 133 + NaN NaN 252194.2 NaN 6528 2413 8942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8944 45.468 NaN 186090 35 0 18381 0.261 -1 MLIEKDPSL 9 59 531.280913035038 1060.547273136876 2 531.2808837890625 MULTI HCD FTMS 0 0 0 8942 94907.1015625 0.5337574854114333 -6 0.17310714721679688 2 Oxidation (M) _M(Oxidation (M))LIEKDPSL_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 31.26834338654808 0.10542797264966089 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KS]VPE 9 -1 + 50.613 0 0 4.7723 4.7723 82.627 0 0 0 3.7017467611347143 20.396446720941697 3.7017467611347143 3.5121967796476383 0 1.7302046884880937 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KS]VPE;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}E{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KS][DP]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]VEVPE;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}[PS]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]VE[DP]{I|L};{M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]V[DP]E{I|L} 4.7723;4.4412;4.3287;4.2294;3.9424;3.829;3.5908;3.3995;3.3796;2.5985 -;-;-;-;-;+;-;-;-;- + 164 NaN NaN 110399.8 NaN 6529 2413 8942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8945 45.472 NaN 266260 35 0 66025 0.263 + -1 LRQRKDKMR 9 66 416.2435305890866 1245.70876236746 3 416.2434997558594 MULTI HCD FTMS 0 0 0 8942 82583.6640625 0.14991705335202826 58 -1.2861442565917969 3 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 4.5288652416199255 0.31668488241058723 1 R 1 -1 13.979 0 0 1.1222 0 0 1071.5972796787864 0 1071.5972796787864 0 1.215190243431472 0 0 0 0 0 0 0 R 1.1222 + + 18 + NaN NaN 125837.1 NaN 6530 2413 8942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8946 45.475 NaN 83906 35 0 12543 0.261 + 1460 AYSRVQYQF 9 29 581.2881870089652 1160.5618210847304 2 581.2879638671875 MULTI HCD FTMS 0 0 0 8942 41274.95703125 0.334090854190109 3 -0.075836181640625 4 Unmodified _AYSRVQYQF_ BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 14.405379775768559 0.2358970535022398 1 YQ{M(Oxidation (M))|F} 3 6 31.198 0 0 2.6882 0 0 704.3603753573561 0 704.3603753573561 0 20.74031267727719 0 0 0 0.5 0 0 0 + YQ{M(Oxidation (M))|F} 2.6882 + + 33 NaN NaN 108323.1 NaN 6531 2413 8942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8947 45.479 NaN 82970 35 0 13655 0.263 -1 0 37 471.3540289887893 470.3467525221893 1 471.3537902832031 MULTI HCD FTMS 0 0 0 8942 46237.12109375 0.1458359843285157 64 -1.4222679138183594 5 NaN NaN 1 {I|L}{I|L}{I|L}{I|L} 4 -1 + 21.031 0 0 4.4713 4.4713 88.53 0 0 0 6.42667503568731 3.7236374744834677 3.7236374744834677 21.030768805449185 0 0.2614393726401688 0 0 0 {I|L}{I|L}{I|L}{I|L} 4.4713 - 5 + NaN NaN 93635 NaN 6532 2413 8942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8948 45.482 NaN 15121 35 0 4912.4 0.261 + 12742 KYDDNVKAYF 10 13 631.8062328966198 1261.5979128600395 2 631.8060913085938 MULTI HCD FTMS 0 0 0 8942 20370.373046875 0.7531374918825442 1 -0.023097991943359375 6 Unmodified _KYDDNVKAYF_ ENSG00000110711|ENST00000279146|AIP 2.498486711656943 0.462078817294651 1 KA[Y{M(Oxidation (M))|F}] 4 6 16.198 0 0 1.2839 0 0 734.3209095685562 0 734.3209095685562 0 16.197887582883936 0 0 0 0 0 0 0 + KA[Y{M(Oxidation (M))|F}] 1.2839 + + 3 NaN NaN 91108.2 NaN 6533 2413 8942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8950 45.487 NaN 544220 35 0 61280 0.327 + 25188 SANLEEVTM 9 61 505.22895669502753 1008.4433604568551 2 505.2287902832031 MULTI HCD FTMS 0 0 0 8949 260049.875 0.6609555807072933 9 -0.2605705261230469 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 110.5527297667825 0.0028521687250969148 1 {I|L}EEVT{M(Oxidation (M))|F} 6 3 71.261 0 0 7.0664 0 0 272.11226088691564 0 272.11226088691564 0 53.55433708249549 0 0 0 2.274227503252014 0 1.086696871556164 0 + {I|L}EEVT{M(Oxidation (M))|F} 7.0664 + + 381 NaN NaN 173457.9 NaN 6534 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8951 45.491 NaN 388260 35 0 30355 0.261 + 4179 ETSPLTAEKL 10 63 544.7956367122465 1087.576720491293 2 544.795166015625 MULTI HCD FTMS 0 0 0 8949 207776.03125 0.7439345267466229 3 -0.08905410766601562 2 Unmodified _ETSPLTAEKL_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 100.7086487251713 0.0001804935997887888 1 {[ET]|[MV]}SP{I|L}TAEK{I|L} 10 0 + 65.032 0 0 5.9795 5.9795 92.45 0 0 0 24.722302576994323 9.896146924363507 9.896146924363507 43.14276931555948 0 1.6496498648046138 0 0.9876954943324545 0.3252574989159953 + + {[ET]|[MV]}SP{I|L}TAEK{I|L};[DP]SP{I|L}[PG][RH]{I|L};[DP]SP[VP]A[RH]{I|L};{[ET]|[MV]}[KA]YA[RH]{I|L} 5.9795;2.0127;1.8508;1.775 +;-;-;- + 394 + NaN NaN 142616.8 NaN 6535 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8952 45.495 NaN 104510 35 0 18748 0.261 -1 RADQFEYVM 9 34 587.7633580190948 1173.5121631049894 2 587.763427734375 MULTI HCD FTMS 0 0 0 8949 50337.5390625 0.11484707839611773 32 -0.9164581298828125 3 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 17.11289562659939 0.2125047172822487 1 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.334483777498 0 746.334483777498 0 16.27636252551653 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 61 NaN NaN 105455.2 NaN 6536 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8953 45.498 NaN 271330 35 0 49393 0.262 + 3464 EGAGILLTR 9 30 465.2742405029554 928.5339280727109 2 465.2744445800781 MULTI HCD FTMS 0 0 0 8949 81910.5703125 0.35620011329583035 -4 0.11219024658203125 4 Unmodified _EGAGILLTR_ ENSG00000134375|ENST00000367287|TIMM17A;ENST00000482943.1_1_1:201932715-201938679:+|nuORF 33.4449034751529 0.0954363425218424 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 8 2 + 44.404 0 0 4.7822 4.7822 90.456 0 0 0 22.185559738766045 14.024174299985006 14.024174299985006 44.40404723492961 0 0.7059771852360797 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 4.7822 - 42 + NaN NaN 123104.7 NaN 6537 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8954 45.502 NaN 95870 35 0 6637.4 0.261 + 13929 KYQPRIAVF 9 51 561.3269918161378 1120.6394306990755 2 561.3267211914062 MULTI HCD FTMS 0 0 0 8949 32967.1953125 0.05894915191918433 20 -0.5668449401855469 5 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 7.289230182591677 0.29575926068275815 1 KYQ 3 6 29.693 0 0 2.6496 0 0 0 698.3984242109202 698.3984242109202 21.10924374808178 0 0 0 0 0 0 0 0.3494850021680094 + KYQ 2.6496 + + 28 + NaN NaN 99563.2 NaN 6538 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8955 45.505 NaN 234740 35 0 36073 0.261 -1 YPHNGMIDL 9 40 538.2473902881984 1074.4802276431967 2 538.7493896484375 MULTI HCD FTMS 0 0 0 8949 21528.099609375 0.4805190417403892 -3 0.08250045776367188 6 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ ENSG00000069849|ENST00000286371|ATP1B3 10.073929032068715 0.27331982688540024 1 {I|L}D{I|L} 3 -1 29.693 0 0 2.7635 0 0 715.2746449201187 0 715.2746449201187 0 29.69273760456403 0 0 0 0.3494850021680094 0 0 0 {I|L}D{I|L} 2.7635 + + 16 NaN NaN 121618.9 NaN 6539 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8956 45.508 NaN 49185 35 0 4719.4 0.261 -1 KYPHYFPVM 9 29 599.2915976264635 1196.568642319727 2 599.2915649414062 MULTI HCD FTMS 0 0 0 8949 16420.439453125 0.45999599930447427 -4 0.11219024658203125 7 Oxidation (M) _KYPHYFPVM(Oxidation (M))_ ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF 28.486842064014134 0.11819662193267319 1 Y{M(Oxidation (M))|F}TQN 5 -1 42.563 0 0 3.5571 0 0 525.2692738263687 0 525.2692738263687 0 29.85985638199878 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F}TQN 3.5571 - 29 NaN NaN 98588.8 NaN 6540 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8957 45.512 NaN 54447 35 0 9086.7 0.263 + -1 CECKLKQEKQ 10 29 450.88816125490916 1349.6426543649275 3 451.22210693359375 MULTI HCD FTMS 0 0 0 8949 19420.451171875 0.6673069318837985 1 -0.036342620849609375 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))EC(Carbamidomethyl (C))KLKQEKQ_ REV__ENSG00000186642|ENST00000334456|PDE2A;REV__ENST00000539367.5_1_11:72287653-72353469:-|nuORF;REV__nc|ENSG00000186642|O00408-2|PDE2A;REV__nc|ENSG00000186642|O00408-3|PDE2A;REV__nc|ENSG00000186642|O00408-4|PDE2A;REV__nc|ENSG00000186642|O00408-5|PDE2A;REV__nc|ENSG00000186642|O00408-6|PDE2A 0.6976657623105312 0.47161084886498755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84188.2 NaN 6541 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8958 45.515 NaN 68183 35 0 6002 0.261 -1 MPDLPEKL 8 45 479.7494376495878 957.4843223659756 2 479.7489318847656 MULTI HCD FTMS 0 0 0 8949 23331.91015625 0.06912625396578208 -38 1.0491714477539062 9 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 20.41453444215458 0.4435908194320988 1 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 -1 + 35.623 0 0 3.7204 3.7204 88.676 0 0 0 10.406075122407685 9.704999916446795 9.704999916446795 35.622600263328295 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 3.7204 + + 32 + NaN NaN 90051.2 NaN 6542 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8959 45.518 NaN 36700 35 0 5368.7 0.261 -1 0 19 620.0693966665002 2476.2484807996007 4 620.3294067382812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 NaN NaN 1 V{[QC]|[C(Carbamidomethyl (C))A]} 3 -1 10.458 0 0 0.42232 0 0 2128.08205918976 0 2128.08205918976 0 10.45757490560675 0 0 0 0 0 0 0 V{[QC]|[C(Carbamidomethyl (C))A]} 0.42232 - 1 NaN NaN 94960.3 NaN 6543 2414 8949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8961 45.523 NaN 487610 35 0 68502 0.327 + 34384 YPEKIQASL 9 83 524.7870970417225 1047.559641150245 2 524.786865234375 MULTI HCD FTMS 0 0 0 8960 226814.515625 0.5797763303823422 2 -0.05271148681640625 1 Unmodified _YPEKIQASL_ ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD;nc|ENSG00000122882|O95905-3|ECD 96.93554129104106 0.004344229100022454 1 YPE[K{I|L}]QAS{I|L} 9 0 + 83.91 0 0 8.01 8.01 91.437 0 0 0 11.435078169319297 11.435078169319297 11.435078169319297 9.208187539523749 0 2.504432191740108 1.5228787452803376 1.555462187404089 0 + + YPE[K{I|L}]QAS{I|L};YPE[K{I|L}][AG]AS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]QAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}][AG]AS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]QATV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}][AG]ATV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]Q[DG]V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]{[DA]|[EG]}NV;{[TV]|[{I|L}S]}PG[Y{I|L}]QAS{I|L};{[TV]|[{I|L}S]}AQ[VP]YAS{I|L} 8.01;7.131;6.9184;6.0394;5.9314;5.0524;4.3108;4.0234;3.5639;2.8871 +;-;+;-;-;-;-;-;-;- + 501 + NaN NaN 159736.3 NaN 6544 2415 8960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8962 45.528 NaN 139010 35 0 11654 0.261 + 6871 FPTVQHQEL 9 60 549.782685210355 1097.55081748751 2 549.7825317382812 MULTI HCD FTMS 0 0 0 8960 74881.5703125 0.13260555632723692 8 -0.2242279052734375 2 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 75.5705956163825 0.007285660612518157 1 HQVTPE 6 7 56.815 0 0 5.1766 0 0 388.19639784980626 0 388.19639784980626 0 30.617515817243515 0 0 0 1.4559771852360797 0 0 0.7614393726401688 HQVTPE 5.1766 - 217 NaN NaN 103067.7 NaN 6545 2415 8960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8963 45.531 NaN 138100 35 0 17305 0.261 -1 RYLSPKYIKMF 11 55 487.93555575279356 1460.7848378585807 3 487.9356994628906 MULTI HCD FTMS 0 0 0 8960 58438.61328125 0.18341999436018783 59 -1.3108787536621094 3 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 12.928695527124582 0.3444342637501213 1 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 23.36 0 0 1.5991 0 0 744.427917547837 0 744.427917547837 0 20.885540741363187 0 0 0 1.3182503180159344 0 0 0 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.5991 + + 32 + NaN NaN 99857 NaN 6546 2415 8960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8964 45.535 NaN 183400 35 0 30391 0.261 + 23483 RLYKMLCHVF 10 54 437.23468217668506 1308.6822171302551 3 437.234375 MULTI HCD FTMS 0 0 0 8960 41190.890625 0.17498524928068462 13 -0.36925506591796875 4 Unmodified _RLYKMLCHVF_ ENSG00000011132|ENST00000316757|APBA3;ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENST00000590064.1_1_19:3753732-3753969:-|nuORF 3.5870582119611467 0.4563168352879256 1 V{M(Oxidation (M))|F} 2 8 30.969 0 0 2.3664 0 0 1044.5351051691207 0 1044.5351051691207 0 23.979400086720375 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3664 + + 13 + NaN NaN 103665.1 NaN 6547 2415 8960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8966 45.54 NaN 569720 35 0 57645 0.327 + 13166 KYLSGIAHF 9 81 518.2847326231742 1034.5549123131484 2 518.2845458984375 MULTI HCD FTMS 0 0 0 8965 296248.90625 0.6722912643157614 3 -0.09912872314453125 1 Unmodified _KYLSGIAHF_ ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF 158.20266083822983 1.5497770410472245E-07 1 KY{I|L}SG{I|L}AH{M(Oxidation (M))|F} 9 0 + 89.083 0 0 8.6108 8.6108 95.506 0 0 0 67.24698021749289 12.98332479720628 12.98332479720628 20.445312593723983 0 2.305462187404089 0 0.868415180652539 0 + + KY{I|L}SG{I|L}AH{M(Oxidation (M))|F};KY{I|L}S[Q{I|L}]H{M(Oxidation (M))|F};[YK]{I|L}SG{I|L}AH{M(Oxidation (M))|F};[YK]{I|L}S[Q{I|L}]H{M(Oxidation (M))|F};KY{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}QQ;{M(Oxidation (M))|F}[TA][KT]{I|L}AH{M(Oxidation (M))|F} 8.6108;6.6345;6.2613;5.2079;3.5318;3.4683 +;-;+;-;-;- + 311 + NaN NaN 187847.7 NaN 6548 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8967 45.544 NaN 535620 35 0 90743 0.261 + 15814 LPIATKEQL 9 69 506.80547531414715 1011.5963976950943 2 506.8052062988281 MULTI HCD FTMS 0 0 0 8965 281703.25 1 0 0 2 Unmodified _LPIATKEQL_ ENSG00000145860|ENST00000424310|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 86.33184430468982 0.004622086694044132 1 {I|L}P{I|L}AT 5 4 80.745 0 0 7.982 0 0 0 513.2673015189717 513.2673015189717 61.099074855912214 0 0 0 0 1.5 1.6989700043360187 1.2302046884880937 0 + {I|L}P{I|L}AT 7.982 + + 429 + NaN NaN 177174.1 NaN 6549 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8968 45.548 NaN 514930 35 0 44598 0.261 + 12326 KMPKFKMPSF 10 84 419.55565402834554 1255.6451326852366 3 419.5556640625 MULTI HCD FTMS 0 0 0 8965 265860.375 0.7008274881835946 7 -0.20783233642578125 3 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 55.466997841574724 0.05790726984578158 1 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 58.344 0 0 4.6466 4.6466 83.229 0 0 0 37.14632226744975 11.573996519486514 11.573996519486514 5.273109370204452 0 1.9049471895720984 0 0.2742275032520141 0 + + K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 4.6466;4.2266 +;- + 381 + NaN NaN 165734.6 NaN 6550 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8969 45.551 NaN 300070 35 0 35763 0.261 + 23610 RPITDSPVL 9 59 499.2874817292977 996.5604105253955 2 499.2873229980469 MULTI HCD FTMS 0 0 0 8965 147851.078125 0.5814740798745524 3 -0.09912872314453125 4 Unmodified _RPITDSPVL_ ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B 22.736283301280096 0.1639198954644489 1 E{[WT]|[RM]}PV{I|L} 6 5 36.956 0 0 3.7083 0 0 253.15339858222814 0 253.15339858222814 0 19.5205343810445 0 0 0 0.5 0 0.805462187404089 0 E{[WT]|[RM]}PV{I|L} 3.7083 - 124 NaN NaN 131778.1 NaN 6551 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8970 45.554 NaN 178900 35 0 22934 0.261 + 533 APDGKSYLL 9 55 482.26088872779206 962.5072245223841 2 482.2605895996094 MULTI HCD FTMS 0 0 0 8965 95659.0703125 1 0 0 5 Unmodified _APDGKSYLL_ ENSG00000153406|ENST00000283429|NMRAL1 16.149105407346934 0.22083165093524068 1 APD 3 6 29.737 0 0 3.0895 0 0 0 676.3691272562712 676.3691272562712 29.737059521965108 0 0 0 0 0.805462187404089 0 0 0 + APD 3.0895 + + 32 + NaN NaN 110009 NaN 6552 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8971 45.558 NaN 230510 35 0 21162 0.261 + 34591 YPNKYESVI 9 58 556.7844713155368 1111.5543896978736 2 556.7843627929688 MULTI HCD FTMS 0 0 0 8965 116849.28125 0.5123889060103429 -4 0.10886764526367188 6 Unmodified _YPNKYESVI_ ENSG00000100280|ENST00000357586|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-4|AP1B1;ZNRF3-AP1B1|1|fusion;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|3|fusion;ZNRF3-AP1B1|4|fusion 45.69961567697781 0.039180348357221985 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NS]{[VA]|[{I|L}G]}YSV{I|L} 10 4 + 53.865 0 0 4.8459 4.8459 90.942 0 0 0 3.612854729690781 15.677711028136358 3.612854729690781 53.86529865438048 0 0.805462187404089 1.6989700043360187 0.7059771852360797 0.28872548999643577 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NS]{[VA]|[{I|L}G]}YSV{I|L} 4.8459 - 164 NaN NaN 118947.2 NaN 6553 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8972 45.561 NaN 195790 35 0 33171 0.261 + 9479 HPWEVMPEL 9 46 569.2734612342365 1136.532369535273 2 569.2736206054688 MULTI HCD FTMS 0 0 0 8965 68365.4296875 0.1605970222553445 35 -0.9837684631347656 7 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 10.823927491677226 0.26684000660059787 1 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3287695453906 752.3287695453906 15 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 20 + NaN NaN 119427 NaN 6554 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8973 45.564 NaN 101310 35 0 11997 0.261 -1 MPEDGQVNI 9 35 509.7286895858459 1017.4428262384919 2 509.728759765625 MULTI HCD FTMS 0 0 0 8965 54789.13671875 0.917297015937311 -6 0.16492843627929688 8 Oxidation (M) _M(Oxidation (M))PEDGQVNI_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 12.240655878213236 0.2545997876781172 1 GDDVN{I|L} 6 -1 33.148 0 0 3.258 0 0 386.15254409004064 0 386.15254409004064 0 33.148350154927826 0 0 0 0.9247425010840047 0 0 0 GDDVN{I|L} 3.258 - 24 NaN NaN 107893.5 NaN 6555 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8974 45.568 NaN 176360 35 0 16395 0.261 + 31827 VYMELSQKL 9 53 563.7945319236048 1125.5745109140096 2 564.2958374023438 MULTI HCD FTMS 0 0 0 8965 50251.85546875 0.426345276150117 -10 0.2852058410644531 9 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 67.83816525789305 0.009787749748478139 1 [YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L} 9 0 + 78.408 0 0 6.966 6.966 89.699 0 0 0 12.342757820673015 12.342757820673015 12.342757820673015 9.208187539523749 0 2.1747425010840047 2 0.3807196863200844 0 + + [YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}E{I|L}[KA][SG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RRE{M(Oxidation (M))|F}M{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))C]{I|L}[{I|L}V]M{I|L} 6.966;6.148;4.2157;0.7719;0.17232 +;-;-;-;- + 221 NaN NaN 111183.5 NaN 6556 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8975 45.571 NaN 48563 35 0 10682 0.261 -1 0 26 582.7696513906718 1163.5247498481435 2 582.7691650390625 MULTI HCD FTMS 0 0 0 8965 17673.822265625 0.08105913518930419 13 -0.3758659362792969 10 NaN NaN 1 S{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 14.705 0 0 1.2638 0 0 840.4133136652277 0 840.4133136652277 0 7.715299873086609 0 0 0 0.4247425010840047 0 0 0 S{[MS]|[{M(Oxidation (M))|F}A]} 1.2638 - 2 NaN NaN 85583.4 NaN 6557 2416 8965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8977 45.576 NaN 286420 35 0 22303 0.327 + 26363 SSNLELHSL 9 73 500.258904936529 998.503256939858 2 500.25885009765625 MULTI HCD FTMS 0 0 0 8976 111578.1875 0.34650800578130886 4 -0.11879730224609375 1 Unmodified _SSNLELHSL_ ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7 55.23464941255904 0.024247875903973527 1 {[CA]|SS}GG{I|L}E{I|L}H{[TV]|[{I|L}S]} 10 2 + 71.916 0 0 7.2024 7.2024 88.24 0 0 0 62.47425010840047 2.5435489454306293 2.5435489454306293 6.5321251377534395 0 2.4916440611282624 0 0.7614393726401688 0 {[CA]|SS}GG{I|L}E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}[PG]QP{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}[PG]QP{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}[PG][AG]P{[TV]|[{I|L}S]};{[CA]|SS}GP{[DS]|[MA]|[CV]|TT}{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}[PG][AG]P{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}E{[HG]|PP}G[KA];{[TV]|[{I|L}S]}[NS]E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}E{[HG]|PP}G[KA] 7.2024;6.5482;5.0569;4.3984;4.1427;3.7654;3.4805;3.1165;2.6845;1.9483 -;+;-;-;-;-;-;-;-;- + 480 + NaN NaN 142035.7 NaN 6558 2417 8976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8978 45.581 NaN 231470 35 0 23419 0.261 + 1316 AYNPNTQTF 9 53 528.2433371123178 1054.4721212914355 2 528.2432250976562 MULTI HCD FTMS 0 0 0 8976 115769.8984375 1 0 0 2 Unmodified _AYNPNTQTF_ ENSG00000174405|ENST00000442234|LIG4 70.33199760932243 0.0089807860198535 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[NP]TQT{M(Oxidation (M))|F} 9 0 + 79.077 0 0 7.4992 7.4992 90.663 0 0 0 25.642492736872597 65.09758745913771 25.642492736872597 9.208187539523749 0 2.1237125054200234 2 0.3494850021680094 0.3252574989159953 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[NP]TQT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GG[NP]TQT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[NP]T[AG]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[NP]TAAS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[NP]{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F} 7.4992;6.626;6.626;6.5086;5.9388 +;-;-;-;- + 114 NaN NaN 133437.2 NaN 6559 2417 8976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8979 45.584 NaN 76461 35 0 6100.3 0.261 + 32048 VYQHGLTGF 9 40 511.2587135325647 1020.5028741319294 2 511.2586975097656 MULTI HCD FTMS 0 0 0 8976 34108.73828125 0.5224359058736247 3 -0.08250045776367188 3 Unmodified _VYQHGLTGF_ ENSG00000030110|ENST00000374467|BAK1 52.268347100219714 0.028397529699942435 1 MTG{M(Oxidation (M))|F} 4 6 42.735 0 0 4.1877 0 0 566.3096501102482 0 566.3096501102482 0 39.24024714504206 0 0 0 1.3807196863200843 0 0 0 MTG{M(Oxidation (M))|F} 4.1877 - 80 + NaN NaN 99251.7 NaN 6560 2417 8976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8980 45.587 NaN 81279 35 0 16749 0.261 -1 0 30 610.1819824948313 609.1747060282313 1 612.1804809570312 MULTI HCD FTMS 0 0 0 8976 33677.49609375 0.8062506540341481 32 -0.9088935852050781 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98749.3 NaN 6561 2417 8976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8981 45.591 NaN 32876 35 0 5997 0.261 + -1 CMCRLRAHF 9 17 625.7899448146131 NaN 0 625.7893676757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))MC(Carbamidomethyl (C))RLRAHF_ REV__nc|ENSG00000126858|Q8IXI2-3|RHOT1 0.5247636613948944 0.2927039108006614 1 M 1 -1 4.6041 0 0 0.36846 0 0 642.7476619907512 472.7613619440063 1115.5090239347576 0 0 0 0 0 0 0 0 0 M 0.36846 + + 1 + NaN NaN 84886.5 NaN 6562 2417 8976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8982 45.594 NaN 36615 35 0 3289 0.261 + 12264 KLNNMSVNDI 10 32 574.2909230826672 NaN 0 574.2910766601562 PEAK HCD FTMS 0 0 0 8976 13590.7041015625 0.5791980753662292 19 -0.5370941162109375 6 Unmodified _KLNNMSVNDI_ tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1 2.498486711656943 0.3380459306859131 1 NW 2 9 7.9588 0 0 0.69414 0 0 355.20445251123425 488.19834314517817 843.4027956564124 0 0 0 0 0 0 0 0 0 NW 0.69414 - 11 + NaN NaN 101720.9 NaN 6563 2417 8976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8984 45.599 NaN 305650 35 0 61323 0.327 + 15527 LPDPGSPRL 9 45 476.2666221094865 950.518691285773 2 476.2662048339844 MULTI HCD FTMS 0 0 0 8983 144968.765625 0.21004416224445044 5 -0.14845657348632812 1 Unmodified _LPDPGSPRL_ ENSG00000188522|ENST00000388995|FAM83G 22.65808497894818 0.16459551161911185 1 {I|L}PDPGS 6 3 64.914 0 0 6.8294 0 0 0 381.22516809635005 381.22516809635005 55.45039703980876 0 0 0 0 1.1549471895720984 1.5228787452803376 0 0 + {I|L}PDPGS 6.8294 + + 66 + NaN NaN 130185 NaN 6564 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8985 45.604 NaN 668090 35 0 68556 0.261 + 7295 FTPDHVVYA 9 81 524.7586054506708 1047.5026579681414 2 524.7583618164062 MULTI HCD FTMS 0 0 0 8983 205343.359375 0.5544030196165053 -2 0.059375762939453125 2 Unmodified _FTPDHVVYA_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 48.345845343767074 0.03388484103555672 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HA]VVYA 9 3 + 39.529 0 0 3.7736 3.7736 79.734 0 0 0 2.8692517469114875 8.507112333562862 2.8692517469114875 0.2996322337744317 0 0.5 1.3010299956639813 1.1307196863200843 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HA]VVYA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A][HD]VYA;[{M(Oxidation (M))|F}T][VP][HD]VYA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HA]VVS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A][HD]VS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VP][HD]VS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HA]{I|L}T{M(Oxidation (M))|F}A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{[YC]|[HE]}T{M(Oxidation (M))|F}A;[{M(Oxidation (M))|F}T][VP]{[YC]|[HE]}T{M(Oxidation (M))|F}A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}][HD]{M(Oxidation (M))|F} 3.7736;3.745;3.4997;2.9615;2.9329;2.6876;1.424;1.3954;1.1501;0.64374 -;-;-;-;-;-;-;-;-;- 993 NaN NaN 201514.3 NaN 6565 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8986 45.607 NaN 272870 35 0 27458 0.261 + -1 MPEVKVETI 9 64 531.280913035038 1060.547273136876 2 531.28076171875 MULTI HCD FTMS 0 0 0 8983 147067.390625 0.8271069215439777 -1 0.023059844970703125 3 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 29.84058131909904 0.11198220037953927 1 {M(Oxidation (M))|F}{I|L}{I|L}[KS]EV 7 -1 51.451 0 0 4.8514 0 0 0 241.06484399967033 241.06484399967033 14.258366874980055 0 0 0 0 2.2302046884880937 2 0 0 {M(Oxidation (M))|F}{I|L}{I|L}[KS]EV 4.8514 - 238 + NaN NaN 118904.1 NaN 6566 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8987 45.611 NaN 156850 35 0 19675 0.261 + 28815 TTVEGLITR 9 54 495.2849105262632 988.5552681193265 2 495.28472900390625 MULTI HCD FTMS 0 0 0 8983 75704.2265625 0.4511536235349593 4 -0.11545562744140625 4 Unmodified _TTVEGLITR_ ENSG00000109917|ENST00000227322|ZPR1 57.24910588100465 0.021429789259086996 1 {[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}TR 9 0 + 57.145 0 0 5.7807 5.7807 92.009 0 0 0 34.70545221231035 11.478174818886373 11.478174818886373 38.96759007070116 0 1.7302046884880937 0 0 0 + + {[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}TR;{[DS]|[MA]|[CV]|TT}V[{I|L}P]{[DS]|[MA]|[CV]|TT}TR 5.7807;1.8388 +;- + 129 + NaN NaN 105183.9 NaN 6567 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8988 45.614 NaN 351700 35 0 50376 0.261 + 7230 FSSNFIKIS 9 63 521.78201925841 1041.5494855836198 2 521.7818603515625 MULTI HCD FTMS 0 0 0 8983 66111.8671875 0.44839098771268493 4 -0.11545562744140625 5 Unmodified _FSSNFIKIS_ ENST00000557320.5_1_14:96999700-97000015:+|nuORF 18.1463463914782 0.20357593197100715 1 VT 2 9 25.217 0 0 2.4211 0 0 823.4232532414941 0 823.4232532414941 0 6.63303128443836 0 0 0 0.4247425010840047 0 0 0 VT 2.4211 - 111 NaN NaN 143188.2 NaN 6568 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8989 45.617 NaN 210600 35 0 38446 0.261 + 24093 RYALQMEQL 9 47 584.2949949494048 1166.5754369656095 2 584.2947387695312 MULTI HCD FTMS 0 0 0 8983 82971.1328125 0.3087238733210351 -8 0.22430419921875 6 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 63.227496030279354 0.01306643085373406 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 79.346 0 0 6.8016 6.8016 89.413 0 0 0 5.6424927368725974 71.38743756437101 5.6424927368725974 9.208187539523749 0 2.048455006504028 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L};[YR][{M(Oxidation (M))|F}V]{[NV]|[RG]}EQ{I|L};[YR]YY[YV]Q{I|L} 6.8016;6.0123;6.0123;5.2267;3.7413;3.716;2.9267;2.2864;2.0465 +;-;-;-;-;-;-;-;- + 235 NaN NaN 120471.9 NaN 6569 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8990 45.621 NaN 85204 35 0 30503 0.264 + 7086 FRDFWEQKF 9 26 434.88198973499004 NaN 0 434.8821716308594 PEAK HCD FTMS 0 0 0 8983 42212.80078125 0.42443981209528586 -31 0.8650970458984375 7 Unmodified _FRDFWEQKF_ ENSG00000198822|ENST00000361669|GRM3;nc|ENSG00000198822|Q14832-2|GRM3 0.9622753412299311 0.2905837902567025 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101139.4 NaN 6570 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8991 45.624 NaN 111540 35 0 7474.5 0.261 + 1578 AYVHMVTHF 9 42 552.7683154465186 1103.5220779598371 2 552.76806640625 MULTI HCD FTMS 0 0 0 8983 51673.953125 0.0316904090184728 39 -0.9805831909179688 8 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 57.47134341890925 0.0211188941628804 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMV[HT]{M(Oxidation (M))|F} 9 0 + 77.101 0 0 6.9868 6.9868 93.155 0 0 0 11.222412206649466 77.10077508221467 11.222412206649466 23.50711233356286 0 2.4247425010840047 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMV[HT]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHYHV{[ES]|[DT]|[{I|L}C]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}MV[HT]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[YV]HH{[ES]|[DT]|[{I|L}C]} 6.9868;4.8566;3.1146;1.7554 +;-;-;- + 137 NaN NaN 118515.5 NaN 6571 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8992 45.627 NaN 75949 35 0 21767 0.261 + -1 CYFDMWALI 9 22 617.766732877739 1233.5189128222778 2 617.7667236328125 MULTI HCD FTMS 0 0 0 8983 40564.54296875 0.3122334693573197 15 -0.4283714294433594 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))YFDM(Oxidation (M))WALI_ REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 26.198 0 0 2.1238 0 0 842.3075428693375 0 842.3075428693375 0 26.197887582883936 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.1238 - 5 NaN NaN 102623.8 NaN 6572 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8993 45.631 NaN 82313 35 0 21440 0.261 + 9416 HPTWGDEQL 9 37 541.7487211382661 1081.482889343332 2 541.748779296875 MULTI HCD FTMS 0 0 0 8983 28098.830078125 0.582144638730934 6 -0.17144012451171875 10 Unmodified _HPTWGDEQL_ ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1 6.2057823575117 0.30397260197431997 1 Q{I|L} 2 7 19.464 0 0 1.7997 0 0 822.3270130841812 0 822.3270130841812 0 19.463950151760656 0 0 0 0 0 0 0 + Q{I|L} 1.7997 + + 14 NaN NaN 96374.6 NaN 6573 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8994 45.634 NaN 46956 35 0 5971.2 0.261 + 21347 PTDDASVPL 9 27 457.72668998846 913.43882704372 2 457.72650146484375 MULTI HCD FTMS 0 0 0 8983 18479.828125 0.6876752862360458 1 -0.039752960205078125 11 Unmodified _PTDDASVPL_ REV__ENSG00000101290|ENST00000460006|CDS2;REV__ENST00000468817.5_1_20:5109393-5167506:+|nuORF;REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF 7.289230182591677 0.29575926068275815 1 P{I|L} 2 -1 25.969 0 0 2.843 0 0 685.2951927711025 0 685.2951927711025 0 25.969100130080562 0 0 0 0.5 0 0 0 P{I|L} 2.843 + + 5 NaN NaN 102929.9 NaN 6574 2418 8983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8996 45.639 NaN 254290 35 0 53283 0.327 -1 0 45 416.2435305890866 1245.70876236746 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8995 68283.5703125 0.1239575861620609 64 -1.4364089965820312 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.243 0 0 1080.629628311599 0 1080.629628311599 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.243 - 21 + NaN NaN 121731.7 NaN 6575 2419 8995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8997 45.643 NaN 80528 35 0 5463 0.261 + 4180 ETSPLTAEKL 10 38 544.7956367122465 1087.576720491293 2 544.7955932617188 MULTI HCD FTMS 0 0 0 8995 43450.40625 0.15557260005437828 8 -0.22076416015625 2 Unmodified _ETSPLTAEKL_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 10.150570793230772 0.4161670024087991 1 K{M(Oxidation (M))|F}CTAEK{I|L} 8 5 29.078 0 0 2.6737 0 0 149.11036909061835 0 149.11036909061835 0 21.221544054770263 0 0 0 0.3494850021680094 0 0 0 K{M(Oxidation (M))|F}CTAEK{I|L} 2.6737 - 108 + NaN NaN 94241.3 NaN 6576 2419 8995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8998 45.647 NaN 73003 35 0 12716 0.261 + 30036 VFQDRQYQI 9 24 598.806278508334 1195.598004083468 2 599.2916870117188 MULTI HCD FTMS 0 0 0 8995 32085.7578125 1 0 0 3 Unmodified _VFQDRQYQI_ ENSG00000139842|ENST00000375440|CUL4A;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000158290|Q13620|CUL4B 21.536976647645854 0.1742816388551942 1 D{M(Oxidation (M))|F}[HK]YQ{I|L} 7 5 46.286 0 0 3.8714 0 0 246.13585097480626 0 246.13585097480626 0 29.463497855897103 0 0 0 0.8807196863200843 0 0 0.4247425010840047 D{M(Oxidation (M))|F}[HK]YQ{I|L} 3.8714 - 76 NaN NaN 90491.8 NaN 6577 2419 8995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 8999 45.65 NaN 84814 35 0 5113.3 0.261 + -1 LCFPWIHF 8 44 560.275097036408 1118.535641139616 2 560.765869140625 MULTI HCD FTMS 0 0 0 8995 10146.595703125 0.7168442475294672 5 -0.13168716430664062 4 Carbamidomethyl (C) _LC(Carbamidomethyl (C))FPWIHF_ REV__ENST00000474645.6_1_6:86215687-86217871:-|nuORF 2.8892196856762586 0.5377058178582064 1 VHQQ{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 7 -1 18.996 0 0 1.6983 0 0 233.1174794639191 0 233.1174794639191 0 9.53234439706371 0 0 0 0 0 0 0 VHQQ{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 1.6983 - 22 + NaN NaN 98360 NaN 6578 2419 8995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9000 45.654 NaN 143580 35 0 8877.2 0.261 + 21959 QELNDRFANY 10 39 635.2967023051905 1268.5788516771809 2 635.79833984375 MULTI HCD FTMS 0 0 0 8995 36246.9609375 0.4557265764894128 -3 0.09912872314453125 5 Unmodified _QELNDRFANY_ ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 46.0223103267499 0.09314584965737738 1 RDTAMY 6 7 43.365 0 0 3.4184 0 0 513.2211781232437 0 513.2211781232437 0 29.100103527040844 0 0 0 0.3494850021680094 0 0 0.5 RDTAMY 3.4184 - 114 NaN NaN 114597.7 NaN 6579 2419 8995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9002 45.659 NaN 324900 35 0 58544 0.327 + 3465 EGAGILLTR 9 37 465.2742405029554 928.5339280727109 2 465.2740783691406 MULTI HCD FTMS 0 0 0 9001 150659.03125 0.6551628659836166 2 -0.0560150146484375 1 Unmodified _EGAGILLTR_ ENSG00000134375|ENST00000367287|TIMM17A;ENST00000482943.1_1_1:201932715-201938679:+|nuORF 18.373094154950223 0.20161688160436167 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 8 2 + 42.358 0 0 4.5618 4.5618 90.007 0 0 0 20.139275466122015 14.904630595263413 14.904630595263413 42.35776296228558 0 0.3252574989159953 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 4.5618 - 63 + NaN NaN 135432.1 NaN 6580 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9003 45.663 NaN 336470 35 0 32397 0.261 + 25189 SANLEEVTM 9 59 505.22895669502753 1008.4433604568551 2 505.2288513183594 MULTI HCD FTMS 0 0 0 9001 165374.53125 0.42032406028474417 15 -0.42826080322265625 2 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 89.40071534611396 0.0045416704840156395 1 EEVT{M(Oxidation (M))|F} 5 4 65.688 0 0 6.5138 0 0 385.1958180158219 0 385.1958180158219 0 54.917665879116626 0 0 0 1.9247425010840047 0 1.086696871556164 0 + EEVT{M(Oxidation (M))|F} 6.5138 + + 169 NaN NaN 129141.7 NaN 6581 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9004 45.667 NaN 217070 35 0 43671 0.261 + 28809 TTSVLIKLS 9 38 481.3001153954117 960.5856778576234 2 481.2998962402344 MULTI HCD FTMS 0 0 0 9001 126252.296875 1 0 0 3 Unmodified _TTSVLIKLS_ ENSG00000071991|ENST00000262150|CDH19;nc|ENSG00000071991|Q9H159-2|CDH19 21.536976647645854 0.1742816388551942 1 {I|L}VS[PS] 5 7 31.466 0 0 3.2757 0 0 459.30552870918126 0 459.30552870918126 0 28.99166239860314 0 0 0 0.5 0 0.4247425010840047 0 {I|L}VS[PS] 3.2757 - 17 NaN NaN 124383.5 NaN 6582 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9005 45.67 NaN 492480 35 0 88935 0.261 + 23571 RPDTLDPAL 9 58 499.2696027157437 996.5246524982874 2 499.269287109375 MULTI HCD FTMS 0 0 0 9001 214902.25 0.17195183998644564 -7 0.19465255737304688 4 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 32.78568957990786 0.09846250359632436 1 DPA{I|L} 4 5 53.8 0 0 5.3988 0 0 582.3118762344724 0 582.3118762344724 0 34.80372444857849 0 0 0 1.4247425010840047 0 0.7614393726401688 0 + DPA{I|L} 5.3988 + + 219 NaN NaN 156054.7 NaN 6583 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9006 45.673 NaN 215980 35 0 37540 0.261 -1 YPHNGMIDL 9 40 538.2473902881984 1074.4802276431967 2 538.2474365234375 MULTI HCD FTMS 0 0 0 9001 64302.77734375 0.8957223010789361 1 -0.036296844482421875 5 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ ENSG00000069849|ENST00000286371|ATP1B3 17.11289562659939 0.2125047172822487 1 {I|L}D{I|L} 3 -1 35.445 0 0 3.2988 0 0 715.2755726717676 0 715.2755726717676 0 16.888793896675267 0 0 0 0.9247425010840047 0 0 0 {I|L}D{I|L} 3.2988 + + 32 NaN NaN 120232.1 NaN 6584 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9007 45.677 NaN 258570 35 0 49071 0.261 + 11511 IYRMRSCI 8 50 521.2714176325585 1040.528282331917 2 521.2548828125 MULTI HCD FTMS 0 0 0 9001 13550.13671875 0.1855122531617733 -10 0.28374481201171875 6 Unmodified _IYRMRSCI_ REV__ENSG00000144028|ENST00000323853|SNRNP200;REV__ENST00000480242.1_1_2:96948912-96949730:-|nuORF;REV__ENST00000497539.5_1_2:96940752-96950410:-|nuORF 5.230669730166228 0.5342319408533849 1 CS{[SA]|[TG]}N 5 -1 14.521 0 0 1.3955 0 0 131.12855110173115 444.2255037897094 575.3540548914406 0 0 0 0 0 0 0 0.3807196863200844 0 CS{[SA]|[TG]}N 1.3955 - 93 + NaN NaN 120919.4 NaN 6585 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9008 45.68 NaN 75296 35 0 16581 0.261 -1 RADQFEYVM 9 29 587.7633580190948 1173.5121631049894 2 587.7634887695312 MULTI HCD FTMS 0 0 0 9001 39277.05078125 0.08961213865941593 38 -0.9336280822753906 7 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 15.248480904072842 0.22861284681709862 1 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5 -1 42.691 0 0 3.6379 0 0 470.2238941876969 0 470.2238941876969 0 33.738350322034236 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 3.6379 + + 42 NaN NaN 92215.7 NaN 6586 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9009 45.683 NaN 89375 35 0 5512 0.261 + 8094 GKHYKKVVY 9 49 561.3269918161378 1120.6394306990755 2 561.3270874023438 MULTI HCD FTMS 0 0 0 9001 39446.63671875 0.07053514133041155 26 -0.744903564453125 8 Unmodified _GKHYKKVVY_ CON__Q28107 4.3292370932331545 0.3181982124262546 1 KYQ 3 7 26.198 0 0 2.3378 0 0 0 698.399132301306 698.399132301306 14.515449934959717 0 0 0 0 0 0 0 0 KYQ 2.3378 - 41 + NaN NaN 101049.1 NaN 6587 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9010 45.687 NaN 52815 35 0 7603.5 0.263 -1 RYQQWMERF 9 38 453.88002880038823 1358.6182570013648 3 454.2135009765625 MULTI HCD FTMS 0 0 0 9001 19877.73046875 0.7952583296868163 1 -0.036296844482421875 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 7.101721422024254 0.29718071671418667 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1397 0 0 1193.5392297570272 0 1193.5392297570272 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1397 + + 7 + NaN NaN 88511.1 NaN 6588 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9011 45.69 NaN 116030 35 0 21166 0.261 + 26082 SPHDISNVL 9 37 491.25357379084613 980.4925946484923 2 491.25311279296875 MULTI HCD FTMS 0 0 0 9001 32589.599609375 0.48979020759792824 -2 0.05944061279296875 10 Unmodified _SPHDISNVL_ ENSG00000180448|ENST00000313093|ARHGAP45;ENST00000587602.5_1_19:1073185-1086002:+|nuORF;nc|ENSG00000180448|Q92619-2|ARHGAP45 8.745405648335112 0.2847203663274469 1 NSV{I|L} 4 6 38.686 0 0 3.9455 0 0 549.2544422834 0 549.2544422834 0 38.68562527100117 0 0 0 0.25 0 0 0.4247425010840047 NSV{I|L} 3.9455 - 6 NaN NaN 101810.9 NaN 6589 2420 9001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9013 45.695 NaN 370460 35 0 31010 0.327 -1 KMPKFKMPSF 10 72 419.55565402834554 1255.6451326852366 3 419.5556640625 MULTI HCD FTMS 0 0 0 9012 182619.703125 0.4813989592617083 12 -0.33263397216796875 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 32.61649475675321 0.20947998662014555 1 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 -1 + 46.029 0 0 3.6657 3.6657 89.052 0 0 0 37.61738475277326 16.532125137753436 16.532125137753436 46.02867538573598 0 1.1237125054200234 0 0 0 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 3.6657 + + 114 + NaN NaN 140323.9 NaN 6590 2421 9012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9014 45.699 NaN 81789 35 0 7465.3 0.261 + 6872 FPTVQHQEL 9 49 549.782685210355 1097.55081748751 2 549.7822875976562 MULTI HCD FTMS 0 0 0 9012 40866.37109375 0.07236904690094913 14 -0.3919639587402344 2 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 9.5439744041441 0.27789851728676895 1 TN{[DS]|[MA]|[CV]|TT} 4 8 20.445 0 0 1.8628 0 0 662.3768788068375 0 662.3768788068375 0 -1.2371250542002343 -1.2371250542002343 0 0 0.4247425010840047 0 0 0 TN{[DS]|[MA]|[CV]|TT} 1.8628 - 14 NaN NaN 97212.2 NaN 6591 2421 9012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9015 45.703 NaN 157840 35 0 19438 0.261 + 21947 QEFPVQAR 8 38 487.75639582345696 973.4982387137139 2 488.2698059082031 MULTI HCD FTMS 0 0 0 9012 15542.5732421875 1 0 0 3 Unmodified _QEFPVQAR_ REV__ENSG00000185043|ENST00000328649|CIB1;REV__nc|ENSG00000185043|Q99828-2|CIB1 7.910154910731844 0.5302565402355366 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 15.573 0 0 1.5997 0 0 661.3840247017984 0 661.3840247017984 0 1.532125137753436 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.5997 - 19 + NaN NaN 108761 NaN 6592 2421 9012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9016 45.706 NaN 42298 35 0 6872.6 0.261 + -1 YQCYAEQLK 9 24 601.7791402102181 1201.543727487236 2 601.7792358398438 MULTI HCD FTMS 0 0 0 9012 40817.640625 0.5623489361921975 -7 0.20785140991210938 4 Carbamidomethyl (C) _YQC(Carbamidomethyl (C))YAEQLK_ REV__ENSG00000008083|ENST00000341776|JARID2;REV__nc|ENSG00000008083|Q92833-2|JARID2;REV__nc|ENSG00000008083|Q92833-3|JARID2 10.073929032068715 0.27331982688540024 1 E 1 -1 6.9897 0 0 0.58173 0 0 276.2102446764923 793.2650850885374 1069.4753297650298 0 0 0 0 0 0 0 0 0 E 0.58173 + + 3 + NaN NaN 88210.4 NaN 6593 2421 9012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9017 45.71 NaN 66130 35 0 6331.4 0.262 -1 MEEMLKKV 8 41 512.2624444370342 1022.5103359408685 2 512.2337646484375 MULTI HCD FTMS 0 0 0 9012 6948.51416015625 0.40852205662910324 -3 0.09573745727539062 5 Oxidation (M) _M(Oxidation (M))EEMLKKV_ tr|U7T6I9|U7T6I9_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00254PE=4SV=1 8.593279151180031 0.5292430274356741 1 T{M(Oxidation (M))|F} 2 -1 22.206 0 0 2.1717 0 0 756.4172400930153 0 756.4172400930153 0 14.90417829939986 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.1717 - 10 + NaN NaN 88332.6 NaN 6594 2421 9012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9019 45.715 NaN 330500 35 0 31823 0.327 + 34592 YPNKYESVI 9 66 556.7844713155368 1111.5543896978736 2 556.7846069335938 MULTI HCD FTMS 0 0 0 9018 165956.421875 0.7277257381497346 2 -0.0559844970703125 1 Unmodified _YPNKYESVI_ ENSG00000100280|ENST00000357586|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-4|AP1B1;ZNRF3-AP1B1|1|fusion;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|3|fusion;ZNRF3-AP1B1|4|fusion 61.60191391372663 0.015340508911304802 1 YEYSV{I|L} 6 4 56.503 0 0 5.0832 0 0 339.19099623847814 0 339.19099623847814 0 17.23320034371433 0 0 0 0.7742275032520141 0 0.7614393726401688 0 YEYSV{I|L} 5.0832 - 399 NaN NaN 136908.4 NaN 6595 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9020 45.719 NaN 314910 35 0 26586 0.261 + 31828 VYMELSQKL 9 61 563.7945319236048 1125.5745109140096 2 563.7940673828125 MULTI HCD FTMS 0 0 0 9018 189850.140625 0.9930308742112515 -2 0.0560150146484375 2 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 107.09958533191995 0.0034159042678574016 1 [YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L} 9 0 + 102.8 0 0 9.1333 9.1333 90 0 0 0 3.7332658759494564 3.7332658759494564 3.7332658759494564 3.7332658759494564 0 2.642159058960253 2 1.079689690656103 0 + + [YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L};VY{M(Oxidation (M))|F}E{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};VY{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[Y{M(Oxidation (M))|F}]VE{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]DQK{I|L};[Y{M(Oxidation (M))|F}]VE{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]D[AG]K{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]DQK{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]D[AG]K{I|L} 9.1333;8.8016;8.3152;7.9835;6.6447;6.4855;5.8267;5.6674;3.9969;3.1788 +;+;-;-;-;-;-;-;-;- + 334 NaN NaN 125172.4 NaN 6596 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9021 45.723 NaN 139320 35 0 14407 0.261 + 10492 IPDTENQTL 9 46 515.7559767187819 1029.4974005043637 2 515.7560424804688 MULTI HCD FTMS 0 0 0 9018 51434.0234375 0.6541866302798784 3 -0.08231353759765625 3 Unmodified _IPDTENQTL_ ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217 15.248480904072842 0.22861284681709862 1 NQT{I|L} 4 5 38.716 0 0 3.7607 0 0 555.2545033185562 0 555.2545033185562 0 31.269184659718547 0 0 0 0.8807196863200843 0 0 0.4247425010840047 + NQT{I|L} 3.7607 + + 15 NaN NaN 107700.5 NaN 6597 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9022 45.726 NaN 176170 35 0 31242 0.261 + 9480 HPWEVMPEL 9 39 569.2734612342365 1136.532369535273 2 569.2737426757812 MULTI HCD FTMS 0 0 0 9018 64648.5234375 0.15186564912595976 41 -0.9249534606933594 4 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 7.289230182591677 0.29575926068275815 1 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3285616510374 752.3285616510374 26.197887582883936 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 14 + NaN NaN 114951.3 NaN 6598 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9023 45.729 NaN 94488 35 0 17104 0.261 + -1 SDSEPEAPI 9 35 493.71940830799633 985.4242636827927 2 493.7189636230469 MULTI HCD FTMS 0 0 0 9018 49241.87109375 0.7490160411437404 -4 0.11545562744140625 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SDSEPEAPI_ REV__ENST00000317276.8_1_17:8044061-8044169:-|nuORF 21.74664581756881 0.17247014374749275 1 E[PA]{I|L} 4 -1 33.06 0 0 3.3549 0 0 557.1979847638687 0 557.1979847638687 0 33.05970632012567 0 0 0 0.8807196863200843 0 0.805462187404089 0 E[PA]{I|L} 3.3549 + + 6 NaN NaN 93538.4 NaN 6599 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9024 45.733 NaN 83419 35 0 7347.3 0.261 -1 MPEDGQVNI 9 34 509.7286895858459 1017.4428262384919 2 509.7285461425781 MULTI HCD FTMS 0 0 0 9018 59728.89453125 1 0 0 6 Oxidation (M) _M(Oxidation (M))PEDGQVNI_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 12.240655878213236 0.2545997876781172 1 VN{I|L} 3 -1 28.729 0 0 2.8236 0 0 673.2371693341812 0 673.2371693341812 0 14.436974992327123 0 0 0 0.8807196863200843 0 0 0 VN{I|L} 2.8236 + + 14 NaN NaN 106068.7 NaN 6600 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9025 45.736 NaN 140600 35 0 10874 0.261 + 20778 PGRWVQVSHVF 11 40 437.9032026422313 1310.687778526894 3 437.9028015136719 MULTI HCD FTMS 0 0 0 9018 33201.890625 0.7691612428225538 -4 0.11545562744140625 7 Unmodified _PGRWVQVSHVF_ ENSG00000188505|ENST00000339852|NCCRP1 1.4551175022131473 0.41253901545122046 1 V{M(Oxidation (M))|F} 2 9 18.583 0 0 1.4178 0 0 1046.541276917322 0 1046.541276917322 0 11.593793813122062 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.4178 + + 11 + NaN NaN 120671.4 NaN 6601 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9026 45.739 NaN 20143 35 0 4081 0.261 -1 WILMPQMWM 9 19 642.2864128223962 NaN 0 642.2864379882812 PEAK HCD FTMS 0 0 0 9018 10433.28515625 0.6785433902399787 1 -0.033000946044921875 8 3 Oxidation (M) _WILM(Oxidation (M))PQM(Oxidation (M))WM(Oxidation (M))_ ENST00000378024.8_2_11:62290097-62290190:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86863.5 NaN 6602 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9027 45.743 NaN 59192 35 0 5441.3 0.263 + 18518 MSNMWKDL 8 40 512.7333827496448 1023.4522125660895 2 512.7324829101562 MULTI HCD FTMS 0 0 0 9018 9794.8466796875 0.1803283814024528 32 -0.8432807922363281 9 Unmodified _MSNMWKDL_ REV__ENSG00000170006|ENST00000304385|TMEM154 6.723162845929126 0.5320176132289695 1 D{I|L} 2 -1 25.217 0 0 2.4639 0 0 777.3287000063874 0 777.3287000063874 0 20.779550148593486 0 0 0 0.4247425010840047 0 0 0 D{I|L} 2.4639 + + 8 NaN NaN 85419.3 NaN 6603 2422 9018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9029 45.748 NaN 626880 35 0 64757 0.327 + 7296 FTPDHVVYA 9 69 524.7586054506708 1047.5026579681414 2 524.7584838867188 MULTI HCD FTMS 0 0 0 9028 224176.40625 0.6052500403716862 3 -0.07571029663085938 1 Unmodified _FTPDHVVYA_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 42.09456458481378 0.05572955244001856 1 [YV]{[RE]|[WV]}[{M(Oxidation (M))|F}T]YA 8 7 + 23.381 0 0 2.232 2.232 80.687 0 0 0 1.46931938939084 10.723179144692308 1.46931938939084 4.221123714783094 0 0.5 1.0457574905606752 0.75 0 [YV]{[RE]|[WV]}[{M(Oxidation (M))|F}T]YA;[YV]{[ET]|[MV]}{M(Oxidation (M))|F}RYA;[YV]{[RE]|[WV]}Y[{M(Oxidation (M))|F}T]A;[YV]{[RE]|[WV]}YA[{M(Oxidation (M))|F}T] 2.232;1.8291;1.7316;0.78741 -;-;-;- 157 NaN NaN 177271 NaN 6604 2423 9028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9030 45.752 NaN 179010 35 0 17983 0.261 -1 MPDLPEKL 8 54 479.7494376495878 957.4843223659756 2 479.7490234375 MULTI HCD FTMS 0 0 0 9028 134010.46875 0.39703743220546045 -29 0.8224639892578125 2 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 38.175570920033316 0.25436662042464897 1 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 -1 + 47.752 0 0 4.9873 4.9873 90.964 0 0 0 21.783343794609138 11.962724883926654 11.962724883926654 47.7524439246897 0 1.5356668758921828 0 0 0 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.9873 + + 29 + NaN NaN 112396.8 NaN 6605 2423 9028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9031 45.756 NaN 123890 35 0 32815 0.261 + 31451 VYDKQIGVY 9 43 542.7853591443034 1083.5561653554066 2 542.284423828125 MULTI HCD FTMS 0 0 0 9028 26423.89453125 0.6915466417876116 -2 0.0527191162109375 3 Unmodified _VYDKQIGVY_ ENSG00000047644|ENST00000380861|WWC3;nc|ENSG00000047644|Q9ULE0-2|WWC3 12.531546534597751 0.2520865569484384 1 QKP 3 8 21.682 0 0 2.001 0 0 712.3484974591812 0 712.3484974591812 0 4.515449934959715 0 0 0 0 0 0 0 QKP 2.001 - 21 NaN NaN 105283.8 NaN 6606 2423 9028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9032 45.759 NaN 103650 35 0 14280 0.261 -1 0 46 482.26088872779206 962.5072245223841 2 482.26116943359375 MULTI HCD FTMS 0 0 0 9028 11411.396484375 0.11929236241891267 7 -0.19434356689453125 4 NaN NaN 1 N{I|L} 2 -1 17.959 0 0 1.8658 0 0 717.3545366163559 0 717.3545366163559 0 3.3547064036788754 0 0 0 0 0 0 0 N{I|L} 1.8658 - 13 NaN NaN 110714.7 NaN 6607 2423 9028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9033 45.762 NaN 21253 35 0 4797.4 0.261 + -1 KLDMMDKDKCG 11 21 452.8698502000532 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 9028 15606.5654296875 0.6137466438329018 33 -0.8248863220214844 5 Carbamidomethyl (C),Oxidation (M) _KLDMM(Oxidation (M))DKDKC(Carbamidomethyl (C))G_ REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97488.3 NaN 6608 2423 9028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9034 45.766 NaN 58718 35 0 6357.4 0.261 -1 YPESESIMM 9 44 559.7225633106935 1117.430573688187 2 559.7222900390625 MULTI HCD FTMS 0 0 0 9028 28823.6953125 0.1896700313851896 -28 0.7861289978027344 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 15.847184025352803 0.2234401846867398 1 {I|L}S[RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 35.551 0 0 3.1815 0 0 312.0815602033219 0 312.0815602033219 0 35.551054989851906 0 0 0 0.7134679910804405 0 0 0 {I|L}S[RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1815 - 25 NaN NaN 94053.7 NaN 6609 2423 9028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9036 45.771 NaN 490410 35 0 89366 0.327 + 24094 RYALQMEQL 9 63 584.2949949494048 1166.5754369656095 2 584.294921875 MULTI HCD FTMS 0 0 0 9035 255288.125 0.9498910776711842 -2 0.0559844970703125 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 103.82355648334675 0.003950725192926219 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 86.476 0 0 7.4128 7.4128 90.549 0 0 0 7.147642715192504 70.38364391835535 7.147642715192504 9.208187539523749 0 2.4604093769761874 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L};[YR][{M(Oxidation (M))|F}V]{[NV]|[RG]}EQ{I|L};[YR]YY[YV]Q{I|L} 7.4128;6.6235;6.6235;5.8379;4.4453;4.2574;3.6559;3.3639;2.3958 +;-;-;-;-;-;-;-;- + 549 NaN NaN 162229.2 NaN 6610 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9037 45.775 NaN 280400 35 0 23817 0.261 -1 MLIEKDPSL 9 70 531.280913035038 1060.547273136876 2 531.2807006835938 MULTI HCD FTMS 0 0 0 9035 105647.8046875 0.5941631937005583 5 -0.145050048828125 2 Oxidation (M) _M(Oxidation (M))LIEKDPSL_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 29.84058131909904 0.11198220037953927 1 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 9 -1 + 44.619 0 0 4.2072 4.2072 85.882 0 0 0 19.130164892754706 10.802433648509364 10.802433648509364 9.62598448311062 0 1.774227503252014 0 0.3054621874040891 0 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VEVPE;[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VE[DP]{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[DP]E{I|L};{M(Oxidation (M))|F}PV{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}T{I|L};{M(Oxidation (M))|F}{I|L}[DP]V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[DP]{I|L}E 4.2072;3.2996;2.9508;2.2664;2.1071;1.922;1.0144 -;-;-;-;-;-;- 378 + NaN NaN 123858.6 NaN 6611 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9038 45.779 NaN 209910 35 0 17050 0.261 + 19395 NPFKQENVL 9 60 544.7900578540529 1087.5655627749056 2 544.7901000976562 MULTI HCD FTMS 0 0 0 9035 85537.46875 1 0 0 3 Unmodified _NPFKQENVL_ ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1 34.93206674587334 0.08860942999206235 1 NV{I|L} 3 6 32.792 0 0 3.0151 0 0 743.355760642775 0 743.355760642775 0 7.557809497117844 0 0 0 0.3494850021680094 0 0 0.8494850021680094 + NV{I|L} 3.0151 + + 96 NaN NaN 123005.7 NaN 6612 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9039 45.782 NaN 249450 35 0 53530 0.263 -1 0 52 416.2435305890866 1245.70876236746 3 416.2436218261719 MULTI HCD FTMS 0 0 0 9035 58133.25390625 0.10553135691333067 69 -1.5928993225097656 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1724 0 0 1080.630116592849 0 1080.630116592849 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1724 - 9 + NaN NaN 136249.5 NaN 6613 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9040 45.785 NaN 150740 35 0 26711 0.261 + 15327 LPAVDEKL 8 44 442.75815054800233 883.5017481628047 2 442.7579345703125 MULTI HCD FTMS 0 0 0 9035 63846.71484375 0.5938379098341299 -1 0.022983551025390625 5 Unmodified _LPAVDEKL_ ENSG00000234906|ENST00000252490|APOC2;ENST00000592257.5_2_19:45449319-45452503:+|nuORF 43.77239144664712 0.1824688044483776 1 {I|L}PAVD 5 3 65.477 0 0 7.4111 0 0 0 385.20990930728755 385.20990930728755 52.28978457299817 0 0 0 0 1.2302046884880937 1.3979400086720375 0.4247425010840047 0 + {I|L}PAVD 7.4111 + + 42 + NaN NaN 95691.5 NaN 6614 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9041 45.789 NaN 125150 35 0 14502 0.261 + 17858 MIDASAIEL 9 39 481.7466998597341 NaN 0 481.7467041015625 PEAK HCD FTMS 0 0 0 9035 35705.57421875 0.9637277341710934 -2 0.0559844970703125 6 Unmodified _MIDASAIEL_ REV__ENST00000272163.8_1_1:225607117-225607493:-|nuORF 11.640296217721598 0.23883959125015683 1 N 1 -1 7.7866 0 0 0.80986 0 0 130.082497764587 714.3312471979124 844.4137449624993 0 0 0 0 0 0.3807196863200844 0 0 0 N 0.80986 - 4 + NaN NaN 107031.6 NaN 6615 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9042 45.792 NaN 31395 35 0 3976.2 0.261 + 11804 KEIRQYELE 9 25 604.318893951299 NaN 0 604.3191528320312 PEAK HCD FTMS 0 0 0 9035 13679.2919921875 0.8149383187652885 3 -0.08907699584960938 7 Unmodified _KEIRQYELE_ REV__ENSG00000163617|ENST00000295878|CCDC191;REV__ENST00000460813.5_1_3:113723412-113755878:-|nuORF;REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191 2.0597508629832335 0.2852655770354268 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.45454 0 0 817.4432250590447 226.1296328180297 1043.5728578770745 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.45454 - 3 + NaN NaN 83287.7 NaN 6616 2424 9035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9044 45.797 NaN 2948300 35 0 390550 0.327 + 16139 LPTRTTPDP 9 105 499.2696027157437 996.5246524982874 2 500.2893371582031 MULTI HCD FTMS 0 0 0 9043 136235.6875 0.7443452629185002 -2 0.049312591552734375 1 Unmodified _LPTRTTPDP_ ENSG00000019144|ENST00000600882|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;nc|ENSG00000019144|Q86UU1-3|PHLDB1 41.8396318013385 0.056899836730939755 1 EP{I|L}AATDP 8 5 50.575 0 0 5.0751 0 0 0 199.1088045709594 199.1088045709594 2.6347683464434297 0 0 0 0 1.0044321917401078 1.2218487496163564 1.3441876774005248 0 EP{I|L}AATDP 5.0751 - 6819 + NaN NaN 527905.1 NaN 6617 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9045 45.801 NaN 85056 35 0 7650.3 0.261 + 21960 QELNDRFANY 10 31 635.2967023051905 1268.5788516771809 2 635.29638671875 MULTI HCD FTMS 0 0 0 9043 65678.9375 0.6131984393203055 2 -0.06274795532226562 2 Unmodified _QELNDRFANY_ ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 15.248480904072842 0.3684828712757339 1 {M(Oxidation (M))|F}AMY 4 7 24.157 0 0 1.9042 0 0 738.32524306465 0 738.32524306465 0 13.699112850717936 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AMY 1.9042 - 22 NaN NaN 108737 NaN 6618 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9046 45.805 NaN 126140 35 0 30830 0.264 + 10011 IERWPNPPYM 10 33 434.88198973499004 NaN 0 434.88201904296875 PEAK HCD FTMS 0 0 0 9043 63748.6796875 0.6409780238960928 -24 0.6773643493652344 3 Unmodified _IERWPNPPYM_ REV__ENSG00000115825|ENST00000234179|PRKD3 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99607.1 NaN 6619 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9047 45.808 NaN 87460 35 0 25042 0.261 + 25733 SKPDILTR 8 30 465.2742405029554 928.5339280727109 2 465.27392578125 MULTI HCD FTMS 0 0 0 9043 32362.130859375 0.1407314664593993 7 -0.1976470947265625 4 Unmodified _SKPDILTR_ ENSG00000204946|ENST00000434415|ZNF783;nc|ENSG00000204946|Q6ZMS7-1|ZNF783 13.042465956692817 0.497831663890332 1 {I|L}{I|L}TR 4 4 26.657 0 0 2.8708 0 0 427.206792833393 0 427.206792833393 0 11.963950151760656 0 0 0 0.25 0 0 0 + {I|L}{I|L}TR 2.8708 + + 16 + NaN NaN 105544.5 NaN 6620 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9048 45.812 NaN 45016 35 0 8095.4 0.261 -1 0 33 474.0636352838439 NaN 0 474.0632629394531 PEAK HCD FTMS 0 0 0 9043 13474.2783203125 0.562720808497709 -11 0.30988311767578125 5 NaN NaN 1 N 1 -1 2.2185 0 0 0.23448 0 0 382.8311704498021 446.2230318658813 829.0542023156834 0 0 0 0 0 0 0 0 0 N 0.23448 - 2 + NaN NaN 88010.2 NaN 6621 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9049 45.815 NaN 19988 35 0 4826.9 0.261 -1 NRIRCQPWR 9 10 643.3403316008271 1284.666110268454 2 643.3397216796875 MULTI HCD FTMS 0 0 0 9043 11506.4501953125 0.541372232329483 -3 0.08231353759765625 6 Carbamidomethyl (C) _NRIRC(Carbamidomethyl (C))QPWR_ ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84395.6 NaN 6622 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9050 45.818 NaN 15053 35 0 4469.6 0.261 -1 QQVECWWPK 9 12 630.7966697303506 1259.578786527501 2 631.2960205078125 MULTI HCD FTMS 0 0 0 9043 4623.81787109375 0.385856055846081 -1 0.02632904052734375 7 Carbamidomethyl (C) _QQVEC(Carbamidomethyl (C))WWPK_ ENST00000425394.6_1_12:56710785-56711043:-|nuORF 0.5247636613948944 0.34703895399870666 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80735.3 NaN 6623 2425 9043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9052 45.823 NaN 227150 35 0 20032 0.327 + 25190 SANLEEVTM 9 47 505.22895669502753 1008.4433604568551 2 505.2286682128906 MULTI HCD FTMS 0 0 0 9051 92574.640625 0.23529226981195767 21 -0.6163368225097656 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 49.55428908609986 0.03219431099695407 1 EEVT{M(Oxidation (M))|F} 5 4 53.232 0 0 5.2786 0 0 385.19517714668126 0 385.19517714668126 0 41.18054082491639 0 0 0 1.9247425010840047 0 0.3807196863200844 0 + EEVT{M(Oxidation (M))|F} 5.2786 + + 85 NaN NaN 121423.7 NaN 6624 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9053 45.828 NaN 258040 35 0 49622 0.262 -1 0 52 416.2435305890866 1245.70876236746 3 416.2435607910156 MULTI HCD FTMS 0 0 0 9051 66715.484375 0.12111098416369424 71 -1.658843994140625 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.243 0 0 1080.6295520176536 0 1080.6295520176536 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.243 - 10 + NaN NaN 137122.6 NaN 6625 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9054 45.831 NaN 148350 35 0 14676 0.261 + 13930 KYQPRIAVF 9 54 561.3269918161378 1120.6394306990755 2 561.3273315429688 MULTI HCD FTMS 0 0 0 9051 38861.4296875 0.06948872358506424 32 -0.7689018249511719 3 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 3.944395688203298 0.32111559684428237 1 KYQ 3 6 15.15 0 0 1.3519 0 0 0 698.3990787957796 698.3990787957796 3.6797678529459468 0 0 0 0 0 0 0 0 + KYQ 1.3519 + + 53 + NaN NaN 108284.1 NaN 6626 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9055 45.835 NaN 63025 35 0 14197 0.261 -1 RADQFEYVM 9 27 587.7633580190948 1173.5121631049894 2 587.76318359375 MULTI HCD FTMS 0 0 0 9051 28979.134765625 0.06611703758793373 44 -0.9173202514648438 4 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 1 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3364124982437 0 746.3364124982437 0 29.20818753952375 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 23 NaN NaN 95754.9 NaN 6627 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9056 45.838 NaN 124960 35 0 23215 0.263 + 6826 FPSRNKLFDHL 11 57 458.5821317334289 1372.7245658004867 3 458.5826416015625 MULTI HCD FTMS 0 0 0 9051 36739.74609375 0.5643670511350166 -5 0.12842941284179688 5 Unmodified _FPSRNKLFDHL_ ENSG00000168724|ENST00000648817|DNAJC21;ENST00000509626.1_1_5:34954007-34954816:+|nuORF;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21 17.571907917122694 0.3039778019619682 1 YY{I|L} 3 10 27.447 0 0 1.9995 0 0 0 930.4836431605535 930.4836431605535 6.478174818886373 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 1.9995 - 15 NaN NaN 111703.2 NaN 6628 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9057 45.841 NaN 44502 35 0 12662 0.261 + -1 CYFDMWALI 9 19 617.766732877739 1233.5189128222778 2 617.7667846679688 MULTI HCD FTMS 0 0 0 9051 26172.388671875 0.20145415474502418 23 -0.6616668701171875 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))YFDM(Oxidation (M))WALI_ REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF 1.844237919475145 0.33703635659052655 1 {I|L}{I|L} 2 -1 20.969 0 0 1.6999 0 0 989.341112205275 0 989.341112205275 0 13.979400086720375 0 0 0 0 0 0 0 {I|L}{I|L} 1.6999 + + 2 NaN NaN 99313.2 NaN 6629 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9058 45.845 NaN 28643 35 0 3694.9 0.261 + 34815 YREQIGDPLG 10 28 574.2909230826672 NaN 0 574.29052734375 PEAK HCD FTMS 0 0 0 9051 15279.5654296875 0.6511726561900435 28 -0.7345695495605469 7 Unmodified _YREQIGDPLG_ REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1 1.3295316138638542 0.339046394236575 1 K 1 -1 5.4846 0 0 0.47835 0 0 77.30906676904677 938.1224459283811 1015.4315126974279 0 0 0 0 0 0 0 0 0 K 0.47835 - 1 + NaN NaN 85008.4 NaN 6630 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9059 45.848 NaN 44538 35 0 4356 0.263 -1 RYQQWMERF 9 30 453.88002880038823 1358.6182570013648 3 453.8801574707031 MULTI HCD FTMS 0 0 0 9051 18411.083984375 0.6749130643941013 5 -0.14822006225585938 8 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 6.1918466704503565 0.30407824485930035 1 W 1 -1 11.237 0 0 0.8271 0 0 575.2753137414023 594.2356661432249 1169.5109798846272 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.8271 + + 5 + NaN NaN 93713.4 NaN 6631 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9060 45.851 NaN 60379 35 0 6053.1 0.261 -1 MAEMKVVLA 9 37 512.2624444370342 1022.5103359408685 2 512.7642211914062 MULTI HCD FTMS 0 0 0 9051 10698.33984375 0.6707182865033794 1 -0.036350250244140625 9 2 Oxidation (M) _M(Oxidation (M))AEM(Oxidation (M))KVVLA_ ENSG00000171903|ENST00000402119|CYP4F11;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000186204|ENST00000550308|CYP4F12;ENSG00000186526|ENST00000612078|CYP4F8;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000518629.7_2_19:15807188-15807892:+|nuORF 7.910154910731844 0.2910521888787154 1 VE{[CP]|[EA]} 4 -1 14.041 0 0 1.3732 0 0 576.3325538137184 0 576.3325538137184 0 8.556518697048716 0 0 0 0.5 0 0 0 VE{[CP]|[EA]} 1.3732 - 40 + NaN NaN 97588.9 NaN 6632 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9061 45.855 NaN 34041 35 0 4257.4 0.261 + 25818 SLPTEFPRPCF 11 24 647.3186259816997 NaN 0 647.3181762695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _SLPTEFPRPCF_ REV__ENSG00000185448|ENST00000346193|FAM47A 0.5059551277355931 0.3406848944787997 1 T 1 -1 3.9794 0 0 0.30785 0 0 664.9792796960181 523.5613497369749 1188.540629432993 0 0 0 0 0 0 0 0 0 T 0.30785 + + 1 + NaN NaN 87967.8 NaN 6633 2426 9051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9063 45.86 NaN 1335600 35 0 267910 0.327 + 25013 RYVRRLDFF 9 90 424.57175045416244 1270.6934219626874 3 424.57177734375 MULTI HCD FTMS 0 0 0 9062 467049.125 0.640505665118998 -5 0.14506149291992188 1 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 26.020703789607367 0.13554323117744113 1 T[QA]{M(Oxidation (M))|F}E 5 8 29.749 0 0 2.3412 0 0 676.4008598374471 0 676.4008598374471 0 3.295671638727029 0 0 0 0 0 0.8807196863200843 0.3494850021680094 T[QA]{M(Oxidation (M))|F}E 2.3412 - 59 NaN NaN 286254.8 NaN 6634 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9064 45.864 NaN 265600 35 0 23417 0.261 -1 KMPKFKMPSF 10 64 419.55565402834554 1255.6451326852366 3 419.5556945800781 MULTI HCD FTMS 0 0 0 9062 121997.9921875 0.32159567377503107 18 -0.5075225830078125 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 17.04857598603903 0.3516453892342385 1 KM[Q{I|L}]{M(Oxidation (M))|F}Y 6 -1 22.127 0 0 1.7622 0 0 0 442.20737634830317 442.20737634830317 0.8893999196139646 0 0 0 0 0.3252574989159953 0 0 0 KM[Q{I|L}]{M(Oxidation (M))|F}Y 1.7622 - 85 + NaN NaN 126296.2 NaN 6635 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9065 45.868 NaN 233160 35 0 37646 0.261 + -1 SLSQGMGAVDK 11 50 554.7689454845829 1107.5233380359657 2 554.7852783203125 MULTI HCD FTMS 0 0 0 9062 30619.791015625 0.3411234924802983 4 -0.11186981201171875 3 Oxidation (M) _SLSQGM(Oxidation (M))GAVDK_ REV__ENSG00000169856|ENST00000305901|ONECUT1 15.248480904072842 0.3242218977034194 1 TQQMQQ[{I|L}T] 8 -1 64.237 0 0 5.8 0 0 131.06241381897195 0 131.06241381897195 0 47.24189577140811 0 0 0 0.3252574989159953 0 1.4749073637206092 1.0484550065040281 TQQMQQ[{I|L}T] 5.8 - 962 + NaN NaN 118569.1 NaN 6636 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9066 45.871 NaN 335470 35 0 37078 0.261 -1 FPQHTIMDA 9 64 538.2473902881984 1074.4802276431967 2 538.7378540039062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _FPQHTIM(Oxidation (M))DA_ ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF 16.942295170755138 0.21397866736869717 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[EP]HSS 8 -1 37.903 0 0 3.5275 0 0 0 161.07431343237434 161.07431343237434 7.897423792133921 0 0 0 0 0.28872548999643577 2 0.7302046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[EP]HSS 3.5275 - 268 NaN NaN 140858.4 NaN 6637 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9067 45.874 NaN 130820 35 0 7168.2 0.261 + 581 APELESKESVL 11 59 601.3193508118422 1200.6241486904844 2 601.3191528320312 MULTI HCD FTMS 0 0 0 9062 101506.8046875 1 0 0 5 Unmodified _APELESKESVL_ ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4 43.476825903602695 0.1145582081028919 1 AESKESV{I|L} 8 3 53.709 0 0 4.4734 0 0 339.17943007636876 0 339.17943007636876 0 35.75048156944675 0 0 0 1.3807196863200843 0 0.3807196863200844 0 AESKESV{I|L} 4.4734 - 177 NaN NaN 117476.1 NaN 6638 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9068 45.878 NaN 67496 35 0 11245 0.262 + 23943 RTSYSSAPL 9 33 491.25357379084613 980.4925946484923 2 491.2532653808594 MULTI HCD FTMS 0 0 0 9062 23660.755859375 0.35559830937454795 5 -0.13489913940429688 6 Unmodified _RTSYSSAPL_ ENSG00000175820|ENST00000322527|CCDC168 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.4895 0 0 815.4467705291548 0 815.4467705291548 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4895 - 1 + NaN NaN 112410 NaN 6639 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9069 45.881 NaN 116860 35 0 9674.5 0.261 + 32050 VYQHLFTRI 9 38 588.8296266496726 1175.6447003661451 2 588.8302001953125 MULTI HCD FTMS 0 0 0 9062 36079.68359375 0.6678164963504494 -1 0.036350250244140625 7 Unmodified _VYQHLFTRI_ AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1 40.72490554402381 0.06201705472789164 1 VYQH{I|L}{M(Oxidation (M))|F} 6 3 76.252 0 0 6.486 0 0 0 385.21958337955317 385.21958337955317 70.31000522516577 0 0 0 0 1.4876954943324545 2 0 0.5 + VYQH{I|L}{M(Oxidation (M))|F} 6.486 + + 53 + NaN NaN 97789.6 NaN 6640 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9070 45.884 NaN 132890 35 0 24524 0.261 + -1 YQFESIVM 8 43 516.7368056876508 NaN 0 516.736572265625 PEAK HCD FTMS 0 0 0 9062 58750.984375 1 0 0 8 Oxidation (M) _YQFESIVM(Oxidation (M))_ REV__ENSG00000145113|ENST00000463781|MUC4;REV__ENST00000464234.5_1_3:195474049-195480138:-|nuORF;REV__nc|ENSG00000145113|Q99102-10|MUC4;REV__nc|ENSG00000145113|Q99102-12|MUC4;REV__nc|ENSG00000145113|Q99102-13|MUC4;REV__nc|ENSG00000145113|Q99102-17|MUC4 6.354104778181461 0.38822285293237185 1 {I|L}V 2 -1 5.5732 0 0 0.54032 0 0 654.2605243618265 162.02283655338127 816.2833609152077 0 0 0 0 0 0 0 0 0 {I|L}V 0.54032 + + 10 + NaN NaN 99109.7 NaN 6641 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9071 45.888 NaN 119960 35 0 9936.4 0.261 + 8391 GYNTFDRLI 9 56 549.7815795741344 1097.5486062150687 2 549.7826538085938 MULTI HCD FTMS 0 0 0 9062 51620.35546875 0.4136621395969887 -24 0.6907577514648438 9 Unmodified _GYNTFDRLI_ REV__ENSG00000141994|ENST00000309061|DUS3L;REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF;REV__nc|ENSG00000141994|Q96G46-3|DUS3L 19.361941925380144 0.1930734562688509 1 TN{[DS]|[MA]|[CV]|TT} 4 -1 33.288 0 0 3.033 0 0 662.3729298008094 0 662.3729298008094 0 12.117581349478641 0 0 0 1.4247425010840047 0 0.3807196863200844 0.3807196863200844 TN{[DS]|[MA]|[CV]|TT} 3.033 - 40 + NaN NaN 123135.7 NaN 6642 2427 9062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9073 45.893 NaN 1039600 35 0 111110 0.327 + 26910 SYLDRTEQL 9 82 562.7826713038478 1123.5507896744955 2 562.7827758789062 MULTI HCD FTMS 0 0 0 9072 575781.25 0.6196397379251805 -3 0.09571456909179688 1 Unmodified _SYLDRTEQL_ ENSG00000065268|ENST00000585809|WDR18 128.57297698046145 0.0006915168155602875 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L} 9 0 + 86.609 0 0 7.7085 7.7085 90.985 0 0 0 6.941767144350109 6.941767144350109 6.941767144350109 9.208187539523749 0 2.579689690656103 0 1.274227503252014 0.4247425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTE[AG]{I|L};{I|L}{[{M(Oxidation (M))|F}C]|[YS]}DRTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DR[MN]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Q[YT]TEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}R{NN|[MP]|[D{I|L}]|[EV]}TEQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[YT]TE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG][YT]TEQ{I|L};{I|L}[HM]{I|L}{[YC]|[HE]}{I|L}[MT];[HM]{I|L}{I|L}{[YC]|[HE]}{I|L}[MT] 7.7085;6.889;5.8692;5.0668;4.4668;4.2207;3.6472;3.6472;2.2314;1.7268 +;-;-;-;-;-;-;-;-;- + 1722 NaN NaN 256994.1 NaN 6643 2428 9072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9074 45.897 NaN 364420 35 0 31255 0.261 -1 0 53 608.6365556774446 1822.8878376325335 3 608.6369018554688 MULTI HCD FTMS 0 0 0 9072 120547.9140625 0.9162999024324198 -2 0.06931686401367188 2 NaN NaN 1 {M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}T][QA]AAV{[{M(Oxidation (M))|F}H]|[RQ]} 15 -1 57.343 0 0 3.1457 0 0 82.0082926855401 0 82.0082926855401 0 42.65031251017078 0 0 0 0.3252574989159953 0 0.4247425010840047 0 {M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}T][QA]AAV{[{M(Oxidation (M))|F}H]|[RQ]} 3.1457 - 225 + NaN NaN 144382.1 NaN 6644 2428 9072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9075 45.901 NaN 365420 35 0 23772 0.261 + 26779 SYGKSDVYQ 9 73 523.7431613874882 1045.4717698417762 2 524.7583618164062 MULTI HCD FTMS 0 0 0 9072 12518.2919921875 1 0 0 3 Unmodified _SYGKSDVYQ_ REV__ENSG00000137710|ENST00000645495|RDX;REV__nc|ENSG00000137710|P35241-5|RDX 13.042465956692817 0.2476723265019929 1 [{M(Oxidation (M))|F}V]{[QC]|[C(Carbamidomethyl (C))A]}K 5 -1 18.261 0 0 1.7467 0 0 0 437.2061861627563 437.2061861627563 0.11256128152760425 0 0 0 0 0 2 0 0 [{M(Oxidation (M))|F}V]{[QC]|[C(Carbamidomethyl (C))A]}K 1.7467 - 239 + NaN NaN 132911.4 NaN 6645 2428 9072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9076 45.904 NaN 271940 35 0 35024 0.261 + 7955 GEAVVNRVF 9 49 495.7722686209179 989.5299843086358 2 495.77252197265625 MULTI HCD FTMS 0 0 0 9072 86008.421875 0.4346126384886183 -2 0.06931686401367188 4 Unmodified _GEAVVNRVF_ ENSG00000240065|ENST00000374859|PSMB9;ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9 57.72198328787511 0.020768266150574023 1 {[DA]|[EG]}AVVNRV{M(Oxidation (M))|F} 9 0 + 65.318 0 0 6.6009 6.6009 86.786 0 0 0 0.23387189888816806 0.23387189888816806 0.23387189888816806 5.748031033778759 0 2.8807196863200843 0 0 0.2742275032520141 + + {[DA]|[EG]}AVVNRV{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VVNRV{M(Oxidation (M))|F};{[DA]|[EG]}AVVGGRV{M(Oxidation (M))|F};{[ET]|[MV]}[KP]NRV{M(Oxidation (M))|F};{[ET]|[MV]}[KP]GGRV{M(Oxidation (M))|F} 6.6009;6.02;5.6703;3.2182;2.2822 +;-;-;-;- + 91 + NaN NaN 121988.4 NaN 6646 2428 9072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9077 45.907 NaN 160240 35 0 36179 0.261 + 19277 NLPQHPDVEM 10 45 590.2765220229161 1178.538491112632 2 590.2761840820312 MULTI HCD FTMS 0 0 0 9072 62758.203125 0.6419189910147882 -3 0.09571456909179688 5 Unmodified _NLPQHPDVEM_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 24.990960013464015 0.27735500881591096 1 EM 2 8 25.217 0 0 2.1396 0 0 900.4448557887404 0 900.4448557887404 0 14.516675202793719 0 0 0 0.4247425010840047 0 0 0 + EM 2.1396 + + 11 NaN NaN 102382.7 NaN 6647 2428 9072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9078 45.911 NaN 107630 35 0 13352 0.262 -1 RYLSPKYIKMF 11 49 487.93552613242105 NaN 0 487.93536376953125 PEAK HCD FTMS 0 0 0 9072 27902.65625 0.587983603483379 -18 0.5177879333496094 6 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 7.846045518447754 0.3198631718753288 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.71773 0 0 257.50428138692956 566.3067110650999 823.8109924520295 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.71773 + + 10 + NaN NaN 97929.8 NaN 6648 2428 9072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9080 45.916 NaN 497250 35 0 79137 0.326 + 24095 RYALQMEQL 9 64 584.2949949494048 1166.5754369656095 2 584.2951049804688 MULTI HCD FTMS 0 0 0 9079 234016.78125 0.8707434101555028 3 -0.07892608642578125 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 93.93812099017352 0.0044227730261779084 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 88.109 0 0 7.5528 7.5528 90.749 0 0 0 6.429993723234517 6.429993723234517 6.429993723234517 9.208187539523749 0 2.6237125054200234 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}C[TA]EQ{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L};{[QN]|[E{I|L}]|[KN]}E[YE]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L};[YR]YY[YV]Q{I|L} 7.5528;6.7635;6.7635;5.9779;5.2283;4.5962;4.2574;3.8069;2.5034;2.3265 +;-;-;-;-;-;-;-;-;- + 717 NaN NaN 164660.9 NaN 6649 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9081 45.92 NaN 182660 35 0 23065 0.262 -1 MPDLPEKL 8 51 479.7494376495878 957.4843223659756 2 479.7491760253906 MULTI HCD FTMS 0 0 0 9079 144220.25 0.42728630282497654 -23 0.66107177734375 2 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 38.175570920033316 0.25436662042464897 1 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 -1 + 45.935 0 0 4.7975 4.7975 90.56 0 0 0 19.965846974768482 12.715299873086607 12.715299873086607 45.934947104849044 0 1.6549471895720984 0 0 0 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.7975 + + 44 + NaN NaN 118922.2 NaN 6650 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9082 45.924 NaN 343170 35 0 30436 0.261 + 30348 VLFINNSEI 9 75 524.7870970417225 1047.559641150245 2 524.291259765625 MULTI HCD FTMS 0 0 0 9079 10892.701171875 0.38748531748077497 12 -0.34276580810546875 3 Unmodified _VLFINNSEI_ REV__ENSG00000121361|ENST00000240662|KCNJ8 8.593279151180031 0.2858735984551981 1 EAED 4 -1 17.167 0 0 1.6388 0 0 133.1833937726273 467.19773279361567 600.381126566243 0 0 0 0 0 0 0 0 0 EAED 1.6388 - 148 + NaN NaN 135368.8 NaN 6651 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9083 45.927 NaN 195600 35 0 29334 0.261 + 9481 HPWEVMPEL 9 50 569.2734612342365 1136.532369535273 2 569.2740478515625 MULTI HCD FTMS 0 0 0 9079 63067.4140625 0.14815146991805175 48 -0.9705657958984375 4 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 10.823927491677226 0.26684000660059787 1 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3303157112249 752.3303157112249 18.239087409443187 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 65 + NaN NaN 118932.2 NaN 6652 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9084 45.93 NaN 110720 35 0 10495 0.261 -1 APWDVMCAL 9 51 511.22920629032257 1020.4438596474452 2 511.22906494140625 MULTI HCD FTMS 0 0 0 9079 34005.046875 0.8639719981230454 3 -0.07892608642578125 5 Oxidation (M) _APWDVM(Oxidation (M))CAL_ ENST00000430373.1_1_1:112290167-112290386:+|nuORF 7.289230182591677 0.29575926068275815 1 A{I|L} 2 -1 25.217 0 0 2.4711 0 0 818.3136065135667 0 818.3136065135667 0 16.274180910963302 0 0 0 0.4247425010840047 0 0 0 A{I|L} 2.4711 + + 16 NaN NaN 104044.3 NaN 6653 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9085 45.934 NaN 65667 35 0 7603.4 0.261 + 11569 IYSTKLYRF 9 25 595.8321557726032 1189.6497586120063 2 595.8311157226562 MULTI HCD FTMS 0 0 0 9079 15797.4287109375 0.42732991248919827 3 -0.07892608642578125 6 Unmodified _IYSTKLYRF_ ENSG00000148925|ENST00000278174|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;nc|ENSG00000148925|Q9BSF8-2|BTBD10 9.38312468134398 0.279288223203164 1 {I|L}Y 2 7 37.959 0 0 3.1908 0 0 0 910.4804171197874 910.4804171197874 37.95880017344075 0 0 0 0 0 2 0 0 + {I|L}Y 3.1908 + + 1 + NaN NaN 92672.5 NaN 6654 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9086 45.937 NaN 38613 35 0 5682.5 0.261 + 8231 GRVSPSPSQES 11 27 565.7765536317129 1129.5385543302257 2 565.77685546875 MULTI HCD FTMS 0 0 0 9079 13964.0146484375 0.8721631210215869 1 -0.026309967041015625 7 Unmodified _GRVSPSPSQES_ ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;nc|ENSG00000131725|Q5JSH3-3|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44 1.0714618166137932 0.41422159895841093 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90681.3 NaN 6655 2429 9079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9088 45.942 NaN 1880700 35 0 240890 0.326 + 3926 EPTIRTSPP 9 100 499.2696027157437 996.5246524982874 2 500.2893371582031 MULTI HCD FTMS 0 0 0 9087 108614.6640625 0.5934334252793061 3 -0.0855712890625 1 Unmodified _EPTIRTSPP_ REV__ENSG00000187147|ENST00000361799|RNF220;REV__ENST00000474064.5_1_1:45098020-45115698:+|nuORF;REV__ENST00000475378.5_1_1:45097966-45116444:+|nuORF;REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF;REV__nc|ENSG00000187147|Q5VTB9-3|RNF220 29.081581746732265 0.1154664336125038 1 [{I|L}P]TEK[YG]P 8 -1 36.035 0 0 3.616 0 0 0 108.02116846610195 108.02116846610195 -4.859981412541423 0 -4.859981412541423 0 0 0 1.5228787452803376 1.045114016114533 0 [{I|L}P]TEK[YG]P 3.616 - 3354 NaN NaN 380274.1 NaN 6656 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9089 45.946 NaN 293700 35 0 28729 0.261 -1 FPGGKEYLM 9 60 529.2553165177549 1056.4960801023096 2 529.7615966796875 MULTI HCD FTMS 0 0 0 9087 86462.703125 0.8461710490632328 1 -0.0295867919921875 2 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 26.268140514670165 0.13340543277302316 1 T{I|L}[NG]VQAQY 9 -1 55.64 0 0 5.2665 0 0 63.99639930391522 0 63.99639930391522 0 19.38039076304328 0 0 0 0.75 0 0 1.1307196863200843 T{I|L}[NG]VQAQY 5.2665 - 730 + NaN NaN 136106.5 NaN 6657 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9090 45.95 NaN 385740 35 0 54853 0.261 + 23657 RPYDAEVSL 9 72 525.2671425352413 1048.5197321372825 2 525.267578125 MULTI HCD FTMS 0 0 0 9087 120800.265625 0.7001763478356002 -2 0.04931640625 3 Unmodified _RPYDAEVSL_ ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant 27.628801355627647 0.12213550946336599 1 VS{I|L} 3 6 40.445 0 0 3.8574 0 0 731.3234005359225 0 731.3234005359225 0 25.924778212679485 0 0 0 1 0 0.4247425010840047 0 + VS{I|L} 3.8574 + + 148 NaN NaN 137601 NaN 6658 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9091 45.953 NaN 210650 35 0 20247 0.261 -1 SANLEEVTM 9 45 505.22895669502753 1008.4433604568551 2 505.228515625 MULTI HCD FTMS 0 0 0 9087 80852.5078125 0.2054987192470364 25 -0.6233062744140625 4 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 34.93206674587334 0.08860942999206235 1 EEVT{M(Oxidation (M))|F} 5 -1 48.716 0 0 4.8309 0 0 385.19600112129064 0 385.19600112129064 0 39.25250945692483 0 0 0 1.805462187404089 0 0.3494850021680094 0 EEVT{M(Oxidation (M))|F} 4.8309 + + 31 NaN NaN 118987.4 NaN 6659 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9092 45.957 NaN 42357 35 0 3569.2 0.261 + -1 LRCARHFRR 9 29 636.3542626996219 1270.6939724660438 2 636.3536987304688 MULTI HCD FTMS 0 0 0 9087 28775.98046875 1 0 0 5 Carbamidomethyl (C) _LRC(Carbamidomethyl (C))ARHFRR_ REV__ENSG00000186204|ENST00000550308|CYP4F12;REV__ENSG00000186526|ENST00000612078|CYP4F8;REV__ENST00000517734.5_1_19:15784518-15794591:+|nuORF;REV__ENST00000518629.7_2_19:15791179-15807110:+|nuORF;REV__ENST00000550627.5_1_19:15793132-15807110:+|nuORF 0.5247636613948944 0.34703895399870666 1 E 1 -1 1.5938 0 0 0.12543 0 0 670.8822792060813 467.7364901178344 1138.6187693239158 0 0 0 0 0 0 0 0 0 E 0.12543 - 2 + NaN NaN 94209.8 NaN 6660 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9093 45.96 NaN 36085 35 0 5736.8 0.261 + 32498 WFGDSFEPIL 10 22 605.7923583984375 NaN 0 605.7923583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _WFGDSFEPIL_ REV__ENSG00000182240|ENST00000330333|BACE2;REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF;REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2;REV__nc|ENSG00000182240|Q9Y5Z0-4|BACE2;REV__nc|ENSG00000182240|Q9Y5Z0-5|BACE2 3.5964929083625545 0.337106189561315 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106066.4 NaN 6661 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9094 45.963 NaN 40400 35 0 3537.5 0.261 -1 YDFDLVLMV 9 33 565.7765536317129 1129.5385543302257 2 565.7763671875 MULTI HCD FTMS 0 0 0 9087 10797.16015625 0.6743680193073004 2 -0.052616119384765625 7 Oxidation (M) _YDFDLVLM(Oxidation (M))V_ ENSG00000070061|ENST00000374647|ELP1 1.844237919475145 0.33703635659052655 1 N 1 -1 6.9897 0 0 0.61881 0 0 368.22673899995067 644.2502535455686 1012.4769925455194 0 0 0 0 0 0 0 0 0 N 0.61881 - 3 + NaN NaN 91209.9 NaN 6662 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9095 45.967 NaN 48209 35 0 5847.6 0.261 -1 MLAILASMLS 10 41 533.28681027202 1064.55906761084 2 533.2868041992188 MULTI HCD FTMS 0 0 0 9087 4605.3505859375 0.06282266045393761 -8 0.22734451293945312 8 Oxidation (M) _M(Oxidation (M))LAILASMLS_ tr|U7T308|U7T308_FUSNUCation/H+exchangerdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00349PE=4SV=1 9.38312468134398 0.42334543440173333 1 {I|L}A{[QN]|[E{I|L}]|[KN]} 4 -1 16.198 0 0 1.5216 0 0 620.3190785138687 0 620.3190785138687 0 14.208187539523749 0 0 0 0 0 0 0 {I|L}A{[QN]|[E{I|L}]|[KN]} 1.5216 - 5 NaN NaN 93137.7 NaN 6663 2430 9087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9097 45.972 NaN 153800 35 0 14730 0.326 -1 HPHDLVILM 9 56 545.7893430940501 1089.5641332549 2 545.789306640625 MULTI HCD FTMS 0 0 0 9096 66601.375 0.2949773570937081 -9 0.2569313049316406 1 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 36.04419817259434 0.08350412372117409 1 A{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 44.553 0 0 4.089 0 0 627.3058457566564 0 627.3058457566564 0 38.09894379144197 0 0 0 1.5 0 0 0 A{I|L}{I|L}{M(Oxidation (M))|F} 4.089 - 107 + NaN NaN 115420.1 NaN 6664 2431 9096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9098 45.976 NaN 106360 35 0 9048.4 0.261 + 9423 HPVFQQESF 9 43 559.7667367295246 1117.5189205258491 2 559.7670288085938 MULTI HCD FTMS 0 0 0 9096 67359.5546875 1 0 0 2 Unmodified _HPVFQQESF_ ENSG00000170430|ENST00000651593|MGMT 34.40172386719151 0.0910440009062557 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}QQES{M(Oxidation (M))|F} 9 0 + 49.425 0 0 4.4227 4.4227 85.317 0 0 0 5.6424927368725974 20.964760273921137 5.6424927368725974 9.208187539523749 0 1.2134679910804405 0 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}QQES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}[AG]QES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}Q[AG]ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}[AG][AG]ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QA][R{M(Oxidation (M))|F}]ES{M(Oxidation (M))|F} 4.4227;3.5988;3.5988;2.7787;2.4706 +;-;-;-;- + 97 NaN NaN 96777.7 NaN 6665 2431 9096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9099 45.98 NaN 77980 35 0 6939.9 0.261 + 2626 DVAQVTGALR 10 37 515.2880811318756 1028.5616093305512 2 515.2879638671875 MULTI HCD FTMS 0 0 0 9096 31435.005859375 0.685028979842138 1 -0.023029327392578125 3 Unmodified _DVAQVTGALR_ ENSG00000100985|ENST00000372330|MMP9 24.881564428377168 0.27837825820855233 1 [DV]AQ{[TV]|[{I|L}S]}Q[R{I|L}] 9 2 + 60.436 0 0 5.8757 5.8757 86.699 0 0 0 60.435684192257995 5.6424927368725974 5.6424927368725974 8.57840941039747 0 1.7302046884880937 2 0 0 [DV]AQ{[TV]|[{I|L}S]}Q[R{I|L}];[DV]AE[KA]Q[R{I|L}];[DV]AQ{[TV]|[{I|L}S]}[AG][R{I|L}];[DV]A[AG]{[TV]|[{I|L}S]}Q[R{I|L}];[DV]AE[KA][AG][R{I|L}] 5.8757;5.0417;4.9805;4.9805;4.1465 -;-;+;-;- + 63 + NaN NaN 92726.2 NaN 6666 2431 9096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9100 45.983 NaN 244310 35 0 49021 0.262 + -1 LRQRKDKMR 9 58 416.2435305890866 1245.70876236746 3 416.2432861328125 MULTI HCD FTMS 0 0 0 9096 47276.58203125 0.08582285553855444 76 -1.8100051879882812 4 Oxidation (M) _LRQRKDKM(Oxidation (M))R_ REV__ENSG00000106038|ENST00000496902|EVX1;REV__ENSG00000174279|ENST00000308618|EVX2;REV__nc|ENSG00000106038|P49640-2|EVX1 4.5288652416199255 0.31668488241058723 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.243 0 0 1080.6300250401146 0 1080.6300250401146 0 2.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.243 + + 26 + NaN NaN 126793.4 NaN 6667 2431 9096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9101 45.986 NaN 77031 35 0 6383.1 0.261 + 12633 KVYAVIKLS 9 48 510.82601826391556 1019.6374835946311 2 510.826171875 MULTI HCD FTMS 0 0 0 9096 42101.19921875 1 0 0 5 Unmodified _KVYAVIKLS_ REV__ENSG00000072315|ENST00000262839|TRPC5 10.823927491677226 0.26684000660059787 1 KY 2 -1 19.464 0 0 1.9089 0 0 0 725.4565523736936 725.4565523736936 13.979400086720375 0 0 0 0 0 0 0 0 KY 1.9089 - 7 + NaN NaN 105953.6 NaN 6668 2431 9096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9102 45.99 NaN 33540 35 0 4384.2 0.261 + -1 SMSAEVFSNKF 11 23 631.789734425009 1261.5649159168179 2 631.7889404296875 MULTI HCD FTMS 0 0 0 9096 13605.1787109375 0.22722596652524163 -6 0.17461776733398438 6 Oxidation (M) _SM(Oxidation (M))SAEVFSNKF_ REV__ENSG00000042445|ENST00000295802|RETSAT 4.897010918128616 0.3974440401582579 1 K{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4235 0 0 968.396776267775 0 968.396776267775 0 17.95880017344075 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 1.4235 + + 1 NaN NaN 101514.9 NaN 6669 2431 9096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9104 45.995 NaN 909310 35 0 166780 0.327 + 23572 RPDTLDPAL 9 46 499.2696027157437 996.5246524982874 2 499.269287109375 MULTI HCD FTMS 0 0 0 9103 572770.375 0.45829636437485627 5 -0.14835357666015625 1 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 41.95555342248728 0.056367691549927025 1 [RP]{[ES]|[DT]|[{I|L}C]}{I|L}DPA{I|L} 9 0 + 59.9 0 0 6.0109 6.0109 91.101 0 0 0 2.0243935592952766 33.95750937337162 2.0243935592952766 21.064921830680696 0 1.774227503252014 0 0.805462187404089 0 + + [RP]{[ES]|[DT]|[{I|L}C]}{I|L}DPA{I|L};[RP]{[ES]|[DT]|[{I|L}C]}{I|L}D{I|L}AP;[RP]{[ES]|[DT]|[{I|L}C]}{I|L}[{I|L}A]DP 6.0109;3.897;1.2128 +;-;- + 183 NaN NaN 228412.7 NaN 6670 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9105 45.999 NaN 1511000 35 0 338600 0.261 + 25014 RYVRRLDFF 9 86 424.57175045416244 1270.6934219626874 3 424.5717468261719 MULTI HCD FTMS 0 0 0 9103 729188.125 1 0 0 2 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 19.361941925380144 0.1930734562688509 1 D{M(Oxidation (M))|F}E 3 7 24.041 0 0 1.892 0 0 861.5332629264914 0 861.5332629264914 0 2.5874185669681538 0 0 0 0 0 0.5 0 D{M(Oxidation (M))|F}E 1.892 - 37 NaN NaN 333346.7 NaN 6671 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9106 46.003 NaN 769590 35 0 98809 0.261 + 29963 VFIDKQTNL 9 102 539.3006057313775 1076.5866585295548 2 539.300537109375 MULTI HCD FTMS 0 0 0 9103 253402.140625 0.4147092743160434 -3 0.07892608642578125 3 Unmodified _VFIDKQTNL_ ENSG00000048740|ENST00000633077|CELF2;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319-3|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 103.41943736471063 0.004016698775839292 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}VD{I|L}D{I|L} 9 7 + 60.763 0 0 5.644 5.644 82.973 0 0 0 1.0945607511649058 1.0945607511649058 1.0945607511649058 1.0945607511649058 0 1 0 1.1593793813122064 1.6861818737241734 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}VD{I|L}D{I|L};V{M(Oxidation (M))|F}{I|L}D[KQ]TN{I|L};[{M(Oxidation (M))|F}V]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}D{I|L};V{M(Oxidation (M))|F}{I|L}D[KQ]NT{I|L};V{M(Oxidation (M))|F}{I|L}DV[RD]T{I|L};V{M(Oxidation (M))|F}{I|L}D[KQ]GGT{I|L};[{M(Oxidation (M))|F}V]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}DEV{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}VDEV{I|L};[{M(Oxidation (M))|F}V]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}QTN{I|L};[{M(Oxidation (M))|F}V]{I|L}[SG]QAKD{I|L} 5.644;5.5424;5.081;4.8381;4.2989;3.9828;3.94;3.5741;3.43;2.9282 -;+;-;-;-;-;-;-;+;- + 1327 NaN NaN 194461.7 NaN 6672 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9107 46.006 NaN 83956 35 0 6428.2 0.261 -1 QYNMNFEKL 9 39 601.7791402102181 1201.543727487236 2 601.7791137695312 MULTI HCD FTMS 0 0 0 9103 48432.93359375 0.6672656299107846 4 -0.11861801147460938 4 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-2|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 18.1463463914782 0.20357593197100715 1 {M(Oxidation (M))|F}K{I|L} 3 -1 22.396 0 0 1.8639 0 0 795.302537986525 0 795.302537986525 0 4.436974992327123 0 0 0 0.5 0 0 0.3494850021680094 {M(Oxidation (M))|F}K{I|L} 1.8639 - 34 NaN NaN 100321.3 NaN 6673 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9108 46.009 NaN 43827 35 0 12409 0.261 -1 RADQFEYVM 9 22 587.7633580190948 1173.5121631049894 2 587.763671875 MULTI HCD FTMS 0 0 0 9103 19709.2265625 0.04496737683858209 50 -1.0528488159179688 5 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 1 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3348255841812 0 746.3348255841812 0 35.088643834802156 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 18 NaN NaN 97111.4 NaN 6674 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9109 46.013 NaN 87747 35 0 17702 0.261 + -1 CHTCAPNR 8 36 508.2115240583995 NaN 0 508.2119140625 PEAK HCD FTMS 0 0 0 9103 31390.80859375 0.5475546302811611 -16 0.4547920227050781 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))HTC(Carbamidomethyl (C))APNR_ REV__ENST00000540664.5_1_10:98722597-98722837:+|nuORF 2.577480529830294 0.38822285293237185 1 E 1 -1 4.6041 0 0 0.45387 0 0 228.99920670879277 653.3376558893186 882.3368625981113 0 0 0 0 0 0 0 0 0 E 0.45387 - 2 + NaN NaN 96510.2 NaN 6675 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9110 46.016 NaN 73835 35 0 10511 0.261 + 3745 ENETHSQLTNL 11 31 643.3053930486592 1284.5962331641183 2 643.3057861328125 MULTI HCD FTMS 0 0 0 9103 26292.037109375 0.894691563394985 -1 0.023029327392578125 7 Unmodified _ENETHSQLTNL_ ENSG00000096872|ENST00000380062|IFT74 12.174745833636585 0.35100345214875917 1 Q{I|L}SQ{I|L} 5 8 47.206 0 0 3.6748 0 0 697.268846580275 0 697.268846580275 0 40.21652514092061 0 0 0 0.5 0 0.4247425010840047 0 Q{I|L}SQ{I|L} 3.6748 - 17 NaN NaN 96539.5 NaN 6676 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9111 46.019 NaN 69017 35 0 7536.5 0.261 + 33602 YIRRWLHF 8 34 595.8321557726032 1189.6497586120063 2 595.8327026367188 MULTI HCD FTMS 0 0 0 9103 10076.064453125 0.2725635810597622 6 -0.17803573608398438 8 Unmodified _YIRRWLHF_ REV__ENST00000370008.3_1_1:109351697-109351763:+|nuORF 0.6903765706972694 0.5409681170271811 1 V 1 -1 3.9794 0 0 0.3345 0 0 150.20745011766877 937.3574312799436 1087.5648813976125 0 0 0 0 0 0 0 0 0 V 0.3345 - 1 + NaN NaN 96053.2 NaN 6677 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9112 46.022 NaN 60337 35 0 6938.8 0.261 + 32583 WKNEQKGEKI 10 33 630.3408672465393 1258.6671815598786 2 630.3407592773438 MULTI HCD FTMS 0 0 0 9103 22474.87890625 0.3779079879470243 -4 0.10193252563476562 9 Unmodified _WKNEQKGEKI_ ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R 6.630372943996041 0.44020808660041416 1 V{I|L}HWK{I|L} 6 8 49.341 0 0 3.9201 0 0 464.20384413886876 0 464.20384413886876 0 49.34115329172698 0 0 0 2.242992819099939 0 0 0 V{I|L}HWK{I|L} 3.9201 - 29 NaN NaN 107301.2 NaN 6678 2432 9103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9114 46.028 NaN 259720 35 0 20216 0.327 -1 KMPKFKMPSF 10 62 419.55565402834554 1255.6451326852366 3 419.5558776855469 MULTI HCD FTMS 0 0 0 9113 99269.0078125 0.2616804004722855 24 -0.5522117614746094 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 17.04857598603903 0.3516453892342385 1 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 3 -1 33.188 0 0 2.6431 0 0 815.436274348082 0 815.436274348082 0 27.703037561203843 0 0 0 0.5 0 0 0.5 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.6431 + + 35 NaN NaN 125140.5 NaN 6679 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9115 46.032 NaN 117930 35 0 20039 0.261 + 29395 TYQQVQQTL 9 34 554.7853910980685 1107.556229262937 2 554.7852172851562 MULTI HCD FTMS 0 0 0 9113 57145.8515625 0.632542338584148 2 -0.059329986572265625 2 Unmodified _TYQQVQQTL_ ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42 32.037481411007896 0.10189719824197178 1 QQMQQT{I|L} 7 3 54.284 0 0 4.9013 0 0 232.1429157941422 0 232.1429157941422 0 48.799566701539305 0 0 0 0 0 0 0.3807196863200844 QQMQQT{I|L} 4.9013 - 221 NaN NaN 106178.8 NaN 6680 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9116 46.036 NaN 271780 35 0 15324 0.261 -1 LNGNFVVTM 9 56 505.7509987393188 NaN 0 505.7607727050781 PEAK HCD FTMS 0 0 0 9113 6355.97802734375 1 0 0 3 Oxidation (M) _LNGNFVVTM(Oxidation (M))_ ENSG00000163638|ENST00000498707|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 10.823927491677226 0.2427956001690155 1 STKPNVT 7 -1 20.76 0 0 2.0565 0 0 117.05748696635426 162.02271448306877 279.08020144942304 0 0 0 0 0 0 0 0.7887254899964358 0 STKPNVT 2.0565 - 103 + NaN NaN 136956.8 NaN 6681 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9117 46.039 NaN 53229 35 0 5888.1 0.261 -1 RYQQWMERF 9 37 453.87999648011066 NaN 0 453.8801574707031 PEAK HCD FTMS 0 0 0 9113 17805.50390625 0.8001950364025526 1 -0.02635955810546875 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 9.5439744041441 0.24899807420857903 1 W 1 -1 6.9897 0 0 0.77171 0 0 122.4046329975276 594.2354193192284 716.640052316756 0 0 0 0 0 0 0 0 0 W 0.77171 + + 4 + NaN NaN 88873.1 NaN 6682 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9118 46.042 NaN 44741 35 0 5634.4 0.261 + 20156 NYKKFYEAF 9 30 605.3005373142522 1208.5865216953043 2 605.3003540039062 MULTI HCD FTMS 0 0 0 9113 33886.0078125 0.8223084497733888 -4 0.11188125610351562 5 Unmodified _NYKKFYEAF_ ENSG00000096384|ENST00000371646|HSP90AB1 6.1918466704503565 0.30407824485930035 1 [YN]K 3 6 28.952 0 0 2.3956 0 0 0 800.3622667007095 800.3622667007095 24.348331157524967 0 0 0 0 0 2 0 0 + [YN]K 2.3956 + + 4 + NaN NaN 102684.9 NaN 6683 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9119 46.046 NaN 46316 35 0 7004.5 0.263 + 7993 GFGFPKCPD 9 25 484.21913263979707 NaN 0 484.2186279296875 PEAK HCD FTMS 0 0 0 9113 18479.306640625 0.6752278216495707 -6 0.16785430908203125 6 Unmodified _GFGFPKCPD_ ENST00000419837.1_1_3:49045052-49048957:+|nuORF;ENST00000429900.6_1_3:49044938-49048957:+|nuORF 5.230669730166228 0.26989974671959066 1 {M(Oxidation (M))|F}G 2 7 10.969 0 0 1.135 0 0 558.2439465766661 201.06646143131096 759.310408007977 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}G 1.135 + + 3 + NaN NaN 86606.1 NaN 6684 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9120 46.049 NaN 12834 35 0 2693.5 0.261 -1 WRMNGMIVML 10 12 633.8114946769706 NaN 0 633.8111572265625 PEAK HCD FTMS 0 0 0 9113 9770.7412109375 0.4896870600018481 9 -0.25055694580078125 7 Oxidation (M) _WRM(Oxidation (M))NGMIVML_ ENSG00000186136|ENST00000334266|TAS2R42;TAS2R42|p.L181Cfs*5|1|0.09|ENSG00000186136|chr12:11186396-11186397|-/TGTTGTGGAAC|frameshift_variant 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92996.6 NaN 6685 2433 9113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9122 46.054 NaN 881600 35 0 94720 0.327 + 26911 SYLDRTEQL 9 77 562.7826713038478 1123.5507896744955 2 562.78271484375 MULTI HCD FTMS 0 0 0 9121 477176.3125 0.5135238516738848 3 -0.08903884887695312 1 Unmodified _SYLDRTEQL_ ENSG00000065268|ENST00000585809|WDR18 97.74103586103693 0.004323122048066454 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L} 9 0 + 76.921 0 0 6.8463 6.8463 89.486 0 0 0 4.644556508912174 4.644556508912174 4.644556508912174 9.208187539523749 0 2.5356668758921828 0 0.7742275032520141 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTE[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DR[MN]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DR[VG]{[DS]|[MA]|[CV]|TT}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D[VG]R{[DS]|[MA]|[CV]|TT}{I|L};{[QN]|[E{I|L}]|[KN]}Q[YT]TEQ{I|L};{[QN]|[E{I|L}]|[KN]}[AG][YT]TEQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[YT]TE[AG]{I|L};[HM]{I|L}{I|L}{[YC]|[HE]}{I|L}[MT];[Q{I|L}]E[YT]R{[DS]|[MA]|[CV]|TT}{I|L} 6.8463;6.0267;4.7875;3.9327;3.9327;3.6664;2.8468;2.8468;1.8533;1.7698 +;-;-;-;-;-;-;-;-;- + 1289 NaN NaN 239024.9 NaN 6686 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9123 46.058 NaN 340310 35 0 57834 0.261 + 24096 RYALQMEQL 9 56 584.2949949494048 1166.5754369656095 2 584.2948608398438 MULTI HCD FTMS 0 0 0 9121 173382.390625 0.6451314015486912 8 -0.2241973876953125 2 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 84.5221896805406 0.004669506596793478 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 86.916 0 0 7.4506 7.4506 90.618 0 0 0 7.147642715192504 71.45365019512084 7.147642715192504 9.208187539523749 0 2.504432191740108 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]AS{[DA]|[EG]}{I|L}MQ{I|L};[YR]A{I|L}C[TA]EQ{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]AS{[DA]|[EG]}{I|L}M[AG]{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L} 7.4506;6.6612;6.6612;5.8756;4.9151;4.6186;4.4453;4.2574;4.1295;3.6559 +;-;-;-;-;-;-;-;-;- + 693 NaN NaN 140170.1 NaN 6687 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9124 46.062 NaN 92897 35 0 24488 0.261 + 19278 NLPQHPDVEM 10 34 590.2765220229161 1178.538491112632 2 590.2763061523438 MULTI HCD FTMS 0 0 0 9121 41595.66796875 0.42545910946340765 3 -0.08903884887695312 3 Unmodified _NLPQHPDVEM_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 7.608950283845883 0.4350283211712914 1 EM 2 8 20.969 0 0 1.7792 0 0 900.4429188459 0 900.4429188459 0 13.521825181113625 0 0 0 0 0 0 0 + EM 1.7792 + + 10 NaN NaN 117281.9 NaN 6688 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9125 46.065 NaN 162020 35 0 24188 0.261 + 9616 HSVVSVYMCN 10 49 569.7539651736345 1137.4933774140688 2 569.7738037109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _HSVVSVYMCN_ ENSG00000184574|ENST00000329858|LPAR5 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F}CN 3 7 19.922 0 0 1.7514 0 0 755.3505773861858 0 755.3505773861858 0 3.890756251918223 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}CN 1.7514 + + 54 NaN NaN 112621.7 NaN 6689 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9126 46.069 NaN 269140 35 0 44513 0.264 + 3975 ERAFLLVWLT 10 52 416.5780211462532 NaN 0 416.5778503417969 PEAK HCD FTMS 0 0 0 9121 26483.365234375 0.551142754342569 -1 0.02635955810546875 5 Unmodified _ERAFLLVWLT_ REV__ENST00000424697.5_1_7:99668324-99668396:-|nuORF 2.9952420565917617 0.3376207769591857 1 S 1 -1 3.0989 0 0 0.37285 0 0 345.9033434626252 395.1924227350219 741.0957661976471 0 0 0 0 0 0 0 0 0 S 0.37285 - 3 + NaN NaN 130242.3 NaN 6690 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9127 46.072 NaN 90578 35 0 12456 0.261 -1 RYLSPKYIKMF 11 42 487.93552613242105 NaN 0 487.9356994628906 PEAK HCD FTMS 0 0 0 9121 46660.15234375 0.9832542202558783 -12 0.3392753601074219 6 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 5.868138319507137 0.3254739249913752 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.71773 0 0 257.4999147943542 566.3048800104124 823.8047948047665 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.71773 + + 2 + NaN NaN 103491.1 NaN 6691 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9128 46.075 NaN 75857 35 0 6673.3 0.261 + 9424 HPVFQQESF 9 30 559.7667367295246 1117.5189205258491 2 559.7667236328125 MULTI HCD FTMS 0 0 0 9121 36265.921875 0.5383931358104704 3 -0.08903884887695312 7 Unmodified _HPVFQQESF_ ENSG00000170430|ENST00000651593|MGMT 12.240655878213236 0.2545997876781172 1 ES{M(Oxidation (M))|F} 3 6 31.198 0 0 2.7917 0 0 736.367479392775 0 736.367479392775 0 7.157271116658492 0 0 0 0.5 0 0 0 + ES{M(Oxidation (M))|F} 2.7917 + + 20 NaN NaN 106047.1 NaN 6692 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9129 46.079 NaN 62629 35 0 8033 0.261 -1 YPALVVEKM 9 30 533.28681027202 1064.55906761084 2 533.2864990234375 MULTI HCD FTMS 0 0 0 9121 21868.416015625 0.2983121585162431 -4 0.11193084716796875 8 Oxidation (M) _YPALVVEKM(Oxidation (M))_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 10.073929032068715 0.27331982688540024 1 VV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.4003 0 0 701.3700428693375 0 701.3700428693375 0 24.20818753952375 0 0 0 1 0 0 0 VV{M(Oxidation (M))|F} 3.4003 - 20 NaN NaN 104873 NaN 6693 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9130 46.082 NaN 52501 35 0 5071.5 0.261 -1 TEMMTTVSLQI 11 20 643.3053930486592 1284.5962331641183 2 643.3040161132812 MULTI HCD FTMS 0 0 0 9121 23022.779296875 0.783442010108605 1 -0.032970428466796875 9 2 Oxidation (M) _TEM(Oxidation (M))M(Oxidation (M))TTVSLQI_ ENSG00000006740|ENST00000379672|ARHGAP44;ENST00000538915.2_1_17:12853006-12862275:+|nuORF;nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44 2.498486711656943 0.4079631525365919 1 {I|L}SQ{I|L} 4 -1 31.938 0 0 2.4862 0 0 825.325487205275 0 825.325487205275 0 24.948500216800937 0 0 0 0 0 0 0 {I|L}SQ{I|L} 2.4862 - 11 NaN NaN 83620.6 NaN 6694 2434 9121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9132 46.087 NaN 171540 35 0 20629 0.327 + 18191 MPDLPEKL 8 53 479.7494376495878 957.4843223659756 2 479.7490539550781 MULTI HCD FTMS 0 0 0 9131 121340.5234375 0.35949974876937735 -17 0.487701416015625 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 41.95555342248728 0.20580824963847894 1 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 47.873 0 0 4.9999 4.9999 90.551 0 0 0 26.904047234929607 9.731975075880328 9.731975075880328 36.38525594981779 0 1.6549471895720984 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L};[EP]{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{I|L} 4.9999;1.1998 +;- + 59 + NaN NaN 110259 NaN 6695 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9133 46.091 NaN 302720 35 0 28763 0.261 -1 RYALQMEQL 9 74 584.2949949494048 1166.5754369656095 2 585.3118286132812 MULTI HCD FTMS 0 0 0 9131 20178.83984375 0.3166357260643891 8 -0.220916748046875 2 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 19.361941925380144 0.1930734562688509 1 PPDSSG 6 -1 33.99 0 0 2.9136 0 0 0 623.3527926080686 623.3527926080686 3.412640931339361 0 0 0 0 0 0 0 0 PPDSSG 2.9136 - 886 + NaN NaN 134826.6 NaN 6696 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9134 46.095 NaN 134270 35 0 25381 0.261 + 9482 HPWEVMPEL 9 45 569.2734612342365 1136.532369535273 2 569.2733764648438 MULTI HCD FTMS 0 0 0 9131 53866.59765625 0.12653786017528962 54 -1.16180419921875 3 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 10.823927491677226 0.26684000660059787 1 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3297823541624 752.3297823541624 24.20818753952375 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 24 + NaN NaN 103570 NaN 6697 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9135 46.098 NaN 154850 35 0 12161 0.261 + 33388 YGNTLVEFR 9 57 549.7815795741344 1097.5486062150687 2 549.7825317382812 MULTI HCD FTMS 0 0 0 9131 51728.546875 0.41452913650526213 -16 0.4479484558105469 4 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 34.40172386719151 0.0910440009062557 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 40.317 0 0 3.6734 0 0 563.3051624982437 0 563.3051624982437 0 7.673523671262288 0 0 0 1.3494850021680094 0 0.7614393726401688 0 VTN{[DS]|[MA]|[CV]|TT} 3.6734 - 270 NaN NaN 111097.2 NaN 6698 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9136 46.102 NaN 90648 35 0 7424.4 0.261 + -1 MPEVKVETI 9 44 531.280913035038 1060.547273136876 2 531.2808837890625 MULTI HCD FTMS 0 0 0 9131 40488.34375 0.22770642230857796 16 -0.4366912841796875 5 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 16.149105407346934 0.22083165093524068 1 T{I|L} 2 -1 24.693 0 0 2.3283 0 0 828.4055042951187 0 828.4055042951187 0 5.462615254271519 0 0 0 0.5 0 0.5 0 T{I|L} 2.3283 + + 38 NaN NaN 97233.9 NaN 6699 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9137 46.105 NaN 62526 35 0 5808.2 0.262 + 8140 GPAPHLRK 8 35 438.2632279790026 NaN 0 438.263671875 PEAK HCD FTMS 0 0 0 9131 10587.283203125 0.3823544950462114 4 -0.112091064453125 6 Unmodified _GPAPHLRK_ ENST00000490089.1_1_7:99998800-100014813:-|nuORF;nc|ENSG00000078487|Q9H0M4-3|ZCWPW1;nc|ENSG00000078487|Q9H0M4-5|ZCWPW1 0.7936320650641473 0.38822285293237185 1 H 1 7 3.4949 0 0 0.39963 0 0 463.2777549308583 271.1555575006469 734.4333124315052 0 0 0 0 0 0 0 0 0 + H 0.39963 + + 1 + NaN NaN 97442.5 NaN 6700 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9138 46.108 NaN 29251 35 0 7194.6 0.261 + -1 MQNCYHCYI 9 17 624.2367382665649 NaN 0 624.3218383789062 PEAK HCD FTMS 0 0 0 9131 11978.4599609375 0.8471907029885195 -1 0.032970428466796875 7 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))QNCYHC(Carbamidomethyl (C))YI_ REV__ENSG00000132530|ENST00000361842|XAF1;REV__ENST00000575369.5_1_17:6662992-6674357:+|nuORF;REV__nc|ENSG00000132530|Q6GPH4-2|XAF1;REV__nc|ENSG00000132530|Q6GPH4-6|XAF1;REV__nc|ENSG00000132530|Q6GPH4-7|XAF1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90286.4 NaN 6701 2435 9131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9140 46.113 NaN 351750 35 0 35549 0.327 + 9130 HPHDLVILM 9 57 545.7893430940501 1089.5641332549 2 545.7891845703125 MULTI HCD FTMS 0 0 0 9139 144854.8125 0.6415616757695263 -4 0.11861801147460938 1 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 77.98433622928108 0.006504613272346738 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV]EV{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 63.623 0 0 5.8393 5.8393 92.91 0 0 0 2.77696854845523 40.66447164506137 2.77696854845523 63.62327181850212 0 2.1989700043360187 0 1.2302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV]EV{I|L}{I|L}{M(Oxidation (M))|F} 5.8393 - 180 NaN NaN 136785.1 NaN 6702 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9141 46.118 NaN 175200 35 0 22691 0.261 + 34779 YQSQPQVLS 9 55 525.2671425352413 1048.5197321372825 2 525.2677001953125 MULTI HCD FTMS 0 0 0 9139 52520.85546875 0.3044187078318834 4 -0.10553359985351562 2 Unmodified _YQSQPQVLS_ REV__ENSG00000105639|ENST00000458235|JAK3;REV__ENST00000527031.5_1_19:17947866-17955268:-|nuORF;REV__nc|ENSG00000105639|P52333-2|JAK3;REV__nc|ENSG00000105639|P52333-4|JAK3 8.155526934196011 0.2891920862272901 1 VS{I|L} 3 -1 36.198 0 0 3.4523 0 0 731.3220783485867 0 731.3220783485867 0 18.723637474483468 0 0 0 1 0 0 0 VS{I|L} 3.4523 - 57 NaN NaN 121607.7 NaN 6703 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9142 46.121 NaN 222290 35 0 54296 0.263 + 20158 NYKKFYEAF 9 42 403.869352308453 NaN 0 403.86932373046875 PEAK HCD FTMS 0 0 0 9139 55159.26171875 0.9451404695217542 -1 0.026332855224609375 3 Unmodified _NYKKFYEAF_ ENSG00000096384|ENST00000371646|HSP90AB1 7.608950283845883 0.2583749310551142 1 N 1 8 1.9897 0 0 0.24695 0 0 556.6129283944467 132.04590784244377 688.6588362368905 0 0 0 0 0 0 0 0 0 + N 0.24695 + + 1 + NaN NaN 135028.8 NaN 6704 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9143 46.125 NaN 150810 35 0 41168 0.261 + 26334 SSDPGQPVL 9 36 450.2265174113347 NaN 0 450.2267150878906 PEAK HCD FTMS 0 0 0 9139 54275.62109375 0.5919903359569769 -3 0.085662841796875 4 Unmodified _SSDPGQPVL_ ENSG00000137393|ENST00000259939|RNF144B;nc|ENSG00000137393|Q7Z419-2|RNF144B 13.90604991867851 0.22786006501039813 1 {I|L} 1 8 7.7642 0 0 0.86419 0 0 327.215027044618 455.1023043268188 782.3173313714368 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.86419 + + 5 + NaN NaN 108757.2 NaN 6705 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9144 46.128 NaN 139010 35 0 15369 0.261 + 26217 SPTEVVERL 9 42 515.2817575885852 1028.5489622439702 2 515.2813720703125 MULTI HCD FTMS 0 0 0 9139 51917.9375 0.7598439903456135 -2 0.05930328369140625 5 Unmodified _SPTEVVERL_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 38.61474834105838 0.07170385841135779 1 [PS]TEVVER{I|L} 9 0 + 50.123 0 0 4.8732 4.8732 85.08 0 0 0 24.71726222832956 11.39506772603255 11.39506772603255 9.018637558036673 0 2.1989700043360187 0 0.5 0 + + [PS]TEVVER{I|L};[PS]TE[{I|L}V]DR{I|L};{[DS]|[MA]|[CV]|TT}[DP]VVER{I|L};{[ET]|[MV]}[PS]VVER{I|L};{[DS]|[MA]|[CV]|TT}[DP][{I|L}V]DR{I|L} 4.8732;3.9964;3.6776;3.3143;2.0835 +;-;-;-;- + 92 + NaN NaN 89517.5 NaN 6706 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9145 46.131 NaN 71947 35 0 11115 0.261 -1 MPLLRQEEL 9 34 572.8051408062785 1143.5957286793569 2 572.8050537109375 MULTI HCD FTMS 0 0 0 9139 30648.53125 0.343384228094661 -8 0.220550537109375 6 Oxidation (M) _M(Oxidation (M))PLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 15.248480904072842 0.22861284681709862 1 {I|L}PE{I|L} 4 -1 29.725 0 0 2.5992 0 0 673.3410511701187 0 673.3410511701187 0 26.625853418640375 0 0 0 0.3807196863200844 0 0 0 {I|L}PE{I|L} 2.5992 - 18 NaN NaN 101988.2 NaN 6707 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9146 46.135 NaN 82819 35 0 5268.9 0.263 + 26313 SRVLRYHFSF 10 29 437.9034783681881 NaN 0 437.9030456542969 PEAK HCD FTMS 0 0 0 9139 16041.30859375 0.5968047079641491 -7 0.19754409790039062 7 Unmodified _SRVLRYHFSF_ ENST00000476203.2_1_1:78269082-78324778:+|nuORF;nc|ENSG00000180488|Q8NAN2-2|MIGA1 0.776531954647913 0.3395196853010637 1 {I|L} 1 9 6.9897 0 0 0.79993 0 0 466.0603309045418 291.6307467096313 757.6910776141731 0 0 0 0 0 0 0 0 0 + {I|L} 0.79993 + + 3 + NaN NaN 113748.3 NaN 6708 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9147 46.138 NaN 39129 35 0 11703 0.261 + -1 CYFDMWALI 9 26 617.766732877739 1233.5189128222778 2 617.7659912109375 MULTI HCD FTMS 0 0 0 9139 15211.9169921875 0.1170891934294762 33 -0.6049919128417969 8 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))YFDM(Oxidation (M))WALI_ REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF 1.844237919475145 0.33703635659052655 1 {I|L}{I|L} 2 -1 20.969 0 0 1.6999 0 0 989.3419666974625 0 989.3419666974625 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.6999 + + 1 NaN NaN 86641.4 NaN 6709 2436 9139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9149 46.143 NaN 1227400 35 0 279270 0.327 + 25015 RYVRRLDFF 9 84 424.57175045416244 1270.6934219626874 3 424.5717468261719 MULTI HCD FTMS 0 0 0 9148 504089.59375 0.6913025273827655 5 -0.13515853881835938 1 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 28.494509381512117 0.11816142465008336 1 D{M(Oxidation (M))|F}E 3 7 30.348 0 0 2.3883 0 0 861.5339015784933 0 861.5339015784933 0 2.91325298820567 0 0 0 0.25 0 0.8807196863200843 0 D{M(Oxidation (M))|F}E 2.3883 - 33 NaN NaN 269172.1 NaN 6710 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9150 46.147 NaN 882390 35 0 121690 0.261 + 29964 VFIDKQTNL 9 103 539.3006057313775 1076.5866585295548 2 539.300537109375 MULTI HCD FTMS 0 0 0 9148 393139.5 0.6433986561749162 2 -0.05602264404296875 2 Unmodified _VFIDKQTNL_ ENSG00000048740|ENST00000633077|CELF2;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319-3|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 93.93812099017352 0.0044227730261779084 1 V{M(Oxidation (M))|F}{I|L}DKQTN{I|L} 9 0 + 76.799 0 0 7.1335 7.1335 87.624 0 0 0 51.95554701812867 1.8969645490403764 1.8969645490403764 5.41769287159272 0 1.6237125054200234 0 0.7302046884880937 1.7218487496163561 + + V{M(Oxidation (M))|F}{I|L}DKQTN{I|L};V{M(Oxidation (M))|F}{I|L}DKQNT{I|L};V{M(Oxidation (M))|F}{I|L}DK[AG]TN{I|L};V{M(Oxidation (M))|F}{I|L}DK[AG]NT{I|L};V{M(Oxidation (M))|F}{I|L}DKQGGT{I|L};[{M(Oxidation (M))|F}V]{I|L}DKQTN{I|L};V{M(Oxidation (M))|F}{I|L}DK[AG]GGT{I|L};{I|L}[{M(Oxidation (M))|F}V]DKQTN{I|L};[{M(Oxidation (M))|F}V]{I|L}DK[AG]TN{I|L};{I|L}[{M(Oxidation (M))|F}V]DKQNT{I|L} 7.1335;6.6303;6.2782;5.775;5.775;5.279;4.9237;4.8689;4.4237;4.3657 +;-;-;-;-;+;-;-;-;- + 1708 + NaN NaN 216648.8 NaN 6711 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9151 46.151 NaN 264700 35 0 46444 0.261 + 23573 RPDTLDPAL 9 52 499.2696027157437 996.5246524982874 2 499.2691650390625 MULTI HCD FTMS 0 0 0 9148 148219.125 0.11859601872447116 10 -0.2967338562011719 3 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 23.789781309258295 0.1548179064208189 1 {I|L}DPA{I|L} 5 4 50.261 0 0 5.0436 0 0 469.22447402168126 0 469.22447402168126 0 40.79689690656103 0 0 0 1.3807196863200843 0 0.3494850021680094 0 + {I|L}DPA{I|L} 5.0436 + + 125 NaN NaN 124039.9 NaN 6712 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9152 46.154 NaN 442250 35 0 56079 0.262 -1 KMPKFKMPSF 10 75 419.55565402834554 1255.6451326852366 3 420.21697998046875 MULTI HCD FTMS 0 0 0 9148 11075.8525390625 0.09443803237624264 28 -0.5225296020507812 4 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 7.0370850670814 0.43805529467587806 1 V{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4302 0 0 991.4980512416804 0 991.4980512416804 0 1.1922626460955819 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.4302 - 180 + NaN NaN 151914.8 NaN 6713 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9153 46.158 NaN 71087 35 0 6544.3 0.261 + -1 SMSAEVFSNKF 11 31 631.789734425009 1261.5649159168179 2 631.7894897460938 MULTI HCD FTMS 0 0 0 9148 59875.10546875 1 0 0 5 Oxidation (M) _SM(Oxidation (M))SAEVFSNKF_ REV__ENSG00000042445|ENST00000295802|RETSAT 8.155526934196011 0.3831532958467648 1 KS{I|L}{M(Oxidation (M))|F} 4 -1 31.414 0 0 2.4901 0 0 768.2757435529312 0 768.2757435529312 0 25.929862658764264 0 0 0 0 0 0.4247425010840047 0 KS{I|L}{M(Oxidation (M))|F} 2.4901 - 12 NaN NaN 100225.8 NaN 6714 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9154 46.161 NaN 74206 35 0 5900.3 0.261 + 1579 AYVHMVTHF 9 37 552.7683154465186 1103.5220779598371 2 552.7682495117188 MULTI HCD FTMS 0 0 0 9148 35060.8984375 0.02150201687398982 58 -1.2765617370605469 6 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 37.97399986684836 0.07464525285885698 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHV{[ES]|[DT]|[{I|L}C]} 9 5 + 40.123 0 0 3.6359 3.6359 88.819 0 0 0 8.150895870504584 21.170912423450403 8.150895870504584 40.123337350737245 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHV{[ES]|[DT]|[{I|L}C]} 3.6359 - 85 NaN NaN 92900.9 NaN 6715 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9155 46.164 NaN 75986 35 0 6649.9 0.261 -1 YSKNISLMM 9 35 559.7667367295246 1117.5189205258491 2 559.7661743164062 MULTI HCD FTMS 0 0 0 9148 21190.90234375 0.31459386039680015 6 -0.16484832763671875 7 2 Oxidation (M) _YSKNISLM(Oxidation (M))M(Oxidation (M))_ ENSG00000103534|ENST00000542583|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-2|TMC5;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-4|TMC5 8.593279151180031 0.2858735984551981 1 {M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 30.221 0 0 2.7043 0 0 165.15009835963662 0 165.15009835963662 0 4.252057161061273 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7043 - 33 + NaN NaN 94045.1 NaN 6716 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9156 46.168 NaN 60582 35 0 7546.8 0.261 + 35816 YYPSDQKLV 9 39 556.7844713155368 1111.5543896978736 2 557.28466796875 MULTI HCD FTMS 0 0 0 9148 21384.001953125 0.15723174980989058 18 -0.4223365783691406 8 Unmodified _YYPSDQKLV_ REV__ENSG00000178202|ENST00000323468|POGLUT3;REV__nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;REV__nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 3.5964929083625545 0.32375295897743744 1 AV 2 -1 9.464 0 0 0.85142 0 0 130.09739617903045 808.3323458307249 938.4297420097553 0 0 0 0 0 0 0 0 0 AV 0.85142 - 5 + NaN NaN 94171.7 NaN 6717 2437 9148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9158 46.173 NaN 224300 35 0 41502 0.327 -1 RLRMRKNSGL 10 49 416.2435305890866 1245.70876236746 3 416.24322509765625 MULTI HCD FTMS 0 0 0 9157 45938.71875 0.08339418489055456 83 -2.0065765380859375 1 Oxidation (M) _RLRM(Oxidation (M))RKNSGL_ ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3 3.5870582119611467 0.4563168352879256 1 {I|L} 1 -1 17.474 0 0 1.4028 0 0 1114.6140490879661 0 1114.6140490879661 0 3.4948500216800937 0 0 0 0.3494850021680094 0 0 0 {I|L} 1.4028 + + 12 + NaN NaN 121770.1 NaN 6718 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9159 46.177 NaN 149650 35 0 17071 0.261 + 18972 NAMEDAQTL 9 43 496.7211452796944 991.4277376261888 2 496.7214050292969 MULTI HCD FTMS 0 0 0 9157 48724.36328125 0.7971765230695685 -3 0.08575057983398438 2 Unmodified _NAMEDAQTL_ ENSG00000196975|ENST00000394295|ANXA4;nc|ENSG00000196975|P09525|ANXA4 29.43715596616401 0.11383414875064776 1 {[QG]|[NA]}MEDAQT{I|L} 9 0 + 58.375 0 0 5.888 5.888 87.792 0 0 0 18.116742845273066 40.47019433344431 18.116742845273066 9.208187539523749 0 1.2614393726401687 1.3979400086720375 0 0 + + {[QG]|[NA]}MEDAQT{I|L};{[QG]|[NA]}MEDA[AG]T{I|L} 5.888;4.9592 +;- + 103 NaN NaN 118253 NaN 6719 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9160 46.181 NaN 48501 35 0 5185.3 0.261 -1 QYNMNFEKL 9 30 601.7791402102181 1201.543727487236 2 601.779296875 MULTI HCD FTMS 0 0 0 9157 38483.09765625 0.5301856917011023 10 -0.28971099853515625 3 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-2|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 5.296884461304476 0.3108627248283497 1 C(Carbamidomethyl (C)){I|L} 2 -1 14.949 0 0 1.2441 0 0 910.4274159162125 0 910.4274159162125 0 4.490925311194188 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){I|L} 1.2441 - 8 NaN NaN 101151.9 NaN 6720 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9161 46.184 NaN 120530 35 0 13884 0.261 + 24576 RYLNKSFVL 9 57 570.3320097610009 1138.6494665888017 2 570.3320922851562 MULTI HCD FTMS 0 0 0 9157 42563.6640625 0.679305247339897 -3 0.08575057983398438 4 Unmodified _RYLNKSFVL_ ENSG00000132623|ENST00000378392|ANKEF1 18.1463463914782 0.20357593197100715 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVNK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 10 3 + 30.748 0 0 2.7004 2.7004 84.609 0 0 0 4.259687322722812 23.758330990418557 4.259687322722812 9.542425094393245 0 0.3807196863200844 0 0 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVNK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVH[NP]KV{I|L} 2.7004;1.8623 -;- 100 NaN NaN 99690.2 NaN 6721 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9162 46.187 NaN 46883 35 0 11195 0.261 -1 RADQFEYVM 9 23 587.7633580190948 1173.5121631049894 2 587.7637939453125 MULTI HCD FTMS 0 0 0 9157 24476.333984375 0.055843720219672315 56 -1.2105865478515625 5 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 12.240655878213236 0.2545997876781172 1 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3347973812126 0 746.3347973812126 0 30.713337517843655 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 18 NaN NaN 83921.5 NaN 6722 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9163 46.191 NaN 27243 35 0 6703.6 0.263 + -1 DLCTYFPFFF 10 20 452.86982761370626 NaN 0 452.869873046875 PEAK HCD FTMS 0 0 0 9157 16726.20703125 0.8766163853771056 -2 0.059417724609375 6 Carbamidomethyl (C) _DLC(Carbamidomethyl (C))TYFPFFF_ REV__ENSG00000142197|ENST00000691173|DOP1B;REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B 0.776531954647913 0.3395196853010637 1 Y 1 -1 3.9794 0 0 0.44033 0 0 470.51692465925004 267.1315096490844 737.6484343083345 0 0 0 0 0 0 0 0 0 Y 0.44033 + + 1 + NaN NaN 82001.9 NaN 6723 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9164 46.194 NaN 50219 35 0 7912.5 0.261 + 14236 LCDPSLPTPRV 11 29 599.318357645469 1196.6221623577378 2 599.318359375 MULTI HCD FTMS 0 0 0 9157 19420.482421875 0.9297427268642823 -3 0.08575057983398438 7 Unmodified _LCDPSLPTPRV_ ENST00000487163.5_1_1:161131815-161133927:+|nuORF 2.735195868890462 0.4069250265843076 1 N 1 11 8.9794 0 0 0.7504 0 0 567.3799271055879 512.1823214166624 1079.5622485222502 0 0 0 0 0 0.5 0 0 0 N 0.7504 - 1 + NaN NaN 100065.5 NaN 6724 2438 9157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9166 46.199 NaN 268280 35 0 34522 0.327 + 24097 RYALQMEQL 9 64 584.2949949494048 1166.5754369656095 2 584.295166015625 MULTI HCD FTMS 0 0 0 9165 89920.296875 0.33458073188130694 13 -0.3372001647949219 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 57.24910588100465 0.021429789259086996 1 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 77.669 0 0 6.6579 6.6579 89.155 0 0 0 7.147642715192504 59.71462831791278 7.147642715192504 9.208187539523749 0 1.579689690656103 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]Q{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}Q{I|L};[YR]YY[YV]Q{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E][AG]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}Q{I|L} 6.6579;5.8685;5.8685;5.0829;3.7839;2.3235;1.9972;1.9672;1.5342;1.2078 +;-;-;-;-;-;-;-;-;- + 332 NaN NaN 141736.2 NaN 6725 2439 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9167 46.203 NaN 36941 35 0 4824.3 0.261 + 20157 NYKKFYEAF 9 29 605.3005373142522 1208.5865216953043 2 605.3004150390625 MULTI HCD FTMS 0 0 0 9165 30076.810546875 0.7298710308921461 2 -0.0594635009765625 2 Unmodified _NYKKFYEAF_ ENSG00000096384|ENST00000371646|HSP90AB1 5.40270961882225 0.3100604913328303 1 NYK 3 6 41.682 0 0 3.4489 0 0 0 800.3627413385374 800.3627413385374 34.69273760456403 0 0 0 0 0 2 0 0 + NYK 3.4489 + + 6 + NaN NaN 97751.5 NaN 6726 2439 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9168 46.207 NaN 140760 35 0 21237 0.261 + 1445 AYSHLRYVF 9 48 578.3005983941623 1154.5866438551245 2 578.3008422851562 MULTI HCD FTMS 0 0 0 9165 35853.359375 0.7397213861126325 -2 0.05602264404296875 3 Unmodified _AYSHLRYVF_ ENSG00000083857|ENST00000441802|FAT1;FAT1-MTNR1A|1|fusion;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant 8.745405648335112 0.2847203663274469 1 V{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8162 0 0 890.4394125633719 0 890.4394125633719 0 13.979400086720375 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.8162 + + 8 NaN NaN 117413.6 NaN 6727 2439 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9169 46.21 NaN 110920 35 0 14805 0.262 + -1 MGPPTECAM 9 38 476.68298500641527 951.3514170796306 2 476.6824951171875 MULTI HCD FTMS 0 0 0 9165 17577.8828125 0.6210620072020723 2 -0.0594635009765625 4 Oxidation (M) _MGPPTECAM(Oxidation (M))_ REV__ENSG00000169856|ENST00000305901|ONECUT1 2.302733041254933 0.33356062215410776 1 VA{M(Oxidation (M))|F} 3 -1 17.167 0 0 1.8045 0 0 616.1986898841212 0 616.1986898841212 0 12.562893943202628 0 0 0 0 0 0 0 VA{M(Oxidation (M))|F} 1.8045 - 12 + NaN NaN 118399.2 NaN 6728 2439 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9170 46.214 NaN 152280 35 0 14429 0.261 + 33182 YEVFKNKNF 9 51 594.8059719373181 NaN 0 594.7918701171875 PEAK HCD FTMS 0 0 0 9165 13202.9443359375 0.6053260737386793 3 -0.07913589477539062 5 Unmodified _YEVFKNKNF_ REV__ENSG00000134899|ENST00000652225|ERCC5;REV__nc|ENSG00000134899|P28715-2|ERCC5 3.944395688203298 0.27613285122220627 1 HS 2 -1 8.5835 0 0 0.72276 0 0 128.0944176173901 832.4025583679635 960.4969759853536 0 0 0 0 0 0 0 0 0 HS 0.72276 - 4 + NaN NaN 107812.8 NaN 6729 2439 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9172 46.219 NaN 275500 35 0 27890 0.327 + 18192 MPDLPEKL 8 69 479.7494376495878 957.4843223659756 2 479.74908447265625 MULTI HCD FTMS 0 0 0 9171 128435.578125 0.3805205117049768 -12 0.3260841369628906 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 45.69961567697781 0.1577113171574352 1 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 0 + 42.317 0 0 4.4196 4.4196 87.381 0 0 0 15.137802001646236 9.704999916446795 9.704999916446795 14.018637558036676 0 1.5941876774005248 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L};[K{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DPE 4.4196;2.9555 +;- + 85 + NaN NaN 124853 NaN 6730 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9173 46.223 NaN 208730 35 0 19549 0.261 -1 SYRKACVLQ 9 59 562.7954238470026 NaN 0 562.7824096679688 PEAK HCD FTMS 0 0 0 9171 5814.63818359375 0.7787290406073213 -5 0.131866455078125 2 Carbamidomethyl (C) _SYRKAC(Carbamidomethyl (C))VLQ_ ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4 11.640296217721598 0.23883959125015683 1 {I|L}{I|L}D 3 -1 14.565 0 0 1.2963 0 0 137.0551288445925 642.3204439752561 779.3755728198487 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}{I|L}D 1.2963 - 53 + NaN NaN 109538.8 NaN 6731 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9174 46.227 NaN 91839 35 0 8474.2 0.261 -1 TPEKVFVVM 9 40 533.28681027202 1064.55906761084 2 533.2868041992188 MULTI HCD FTMS 0 0 0 9171 48725.87890625 0.6646810679721327 2 -0.059360504150390625 3 Oxidation (M) _TPEKVFVVM(Oxidation (M))_ ENSG00000105287|ENST00000291281|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 12.240655878213236 0.2545997876781172 1 [HA]TVT 5 -1 30.273 0 0 2.8437 0 0 0 552.2916964166624 552.2916964166624 0.056584229283842546 0 0 0 0 0.805462187404089 0 0 0 [HA]TVT 2.8437 - 30 + NaN NaN 102986.9 NaN 6732 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9175 46.23 NaN 139760 35 0 25566 0.262 -1 SFFLCKIREC 10 40 434.88198973499004 NaN 0 434.88201904296875 PEAK HCD FTMS 0 0 0 9171 64291.203125 0.646432969827377 -9 0.24718093872070312 4 Carbamidomethyl (C) _SFFLC(Carbamidomethyl (C))KIREC_ nc|ENSG00000203711|Q4VX62-2|LINC02901;nc|ENSG00000203711|Q4VX62|LINC02901 1.5922808571145555 0.3388215173004697 1 A 1 -1 3.0989 0 0 0.35712 0 0 661.6440473637317 132.0450380914672 793.6890854551989 0 0 0 0 0 0 0 0 0 A 0.35712 - 1 + NaN NaN 104723 NaN 6733 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9176 46.233 NaN 135190 35 0 18030 0.261 + 10297 ILDEAERSL 9 67 523.2792545852506 1044.543956237301 2 523.2794189453125 MULTI HCD FTMS 0 0 0 9171 26982.943359375 0.6055429846998485 1 -0.0396881103515625 5 Unmodified _ILDEAERSL_ ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2 42.312485326615175 0.05472917415473307 1 {I|L}{I|L}DEAERS{I|L} 9 0 {I|L}{I|L} + + 38.549 20.458 9.0453 3.6905 3.6905 59.774 0 0 0 0 24.569488448666803 0 0 0 1.8539171939081172 0 0.3054621874040891 0 + + {I|L}{I|L}DEAERS{I|L} 3.6905 + + 149 + NaN NaN 120598.6 NaN 6734 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9177 46.237 NaN 91232 35 0 9977.6 0.261 -1 YPESESIMM 9 35 559.7225633106935 1117.430573688187 2 559.7222900390625 MULTI HCD FTMS 0 0 0 9171 32646.669921875 0.21482654606117155 -11 0.30307769775390625 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 34.10243960390752 0.09241788333544565 1 T{M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 47.384 0 0 4.2404 0 0 63.99886262318552 0 63.99886262318552 0 47.38351285388511 0 0 0 0.5 0 0.4247425010840047 0 T{M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2404 - 49 + NaN NaN 109168.9 NaN 6735 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9178 46.24 NaN 81513 35 0 15543 0.261 -1 LHLSQFNSMS 10 37 590.2765220229161 1178.538491112632 2 590.76708984375 MULTI HCD FTMS 0 0 0 9171 9037.5791015625 0.17479273386558422 8 -0.24359512329101562 7 Oxidation (M) _LHLSQFNSM(Oxidation (M))S_ ENSG00000114554|ENST00000393409|PLXNA1;ENST00000503234.5_1_3:126746482-126752857:+|nuORF 3.5964929083625545 0.45626689593999237 1 [HN]SVS 5 -1 22.218 0 0 1.8853 0 0 0 651.2921846979124 651.2921846979124 11.27636252551653 0 0 0 0 0 0 0 0 [HN]SVS 1.8853 - 14 + NaN NaN 104405.6 NaN 6736 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9179 46.243 NaN 283610 35 0 17414 0.261 + 11122 IYIKQIKTF 9 70 577.3525994629265 1152.690645992653 2 577.8539428710938 MULTI HCD FTMS 0 0 0 9171 46517.68359375 0.3704941590951233 -3 0.07579803466796875 8 Unmodified _IYIKQIKTF_ ENSG00000103479|ENST00000262133|RBL2 90.13494162714682 0.004522430935000059 1 {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F} 9 0 + 106.09 0 0 9.2038 9.2038 93.187 0 0 0 85.12246919885804 14.973024840566467 14.973024840566467 9.208187539523749 0 2.774227503252014 2 0.9049471895720984 0.6549471895720985 + + {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F};{I|L}Y{I|L}K[AG]{I|L}KT{M(Oxidation (M))|F};{I|L}Y{I|L}K[{I|L}A]GKT{M(Oxidation (M))|F};[Y{I|L}]{I|L}KQ{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}KQ{I|L}TK{M(Oxidation (M))|F};[Y{I|L}]{I|L}[QT][K{I|L}]K{M(Oxidation (M))|F};[RH]T{I|L}[R{I|L}]K{[ET]|[MV]};[{M(Oxidation (M))|F}T]K{[QN]|[E{I|L}]|[KN]}[K{I|L}]K{M(Oxidation (M))|F} 9.2038;8.405;7.7428;6.9305;6.1863;3.1277;1.2903;0.24179 +;-;-;+;-;-;-;- + 285 + NaN NaN 148405.7 NaN 6737 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9180 46.247 NaN 90248 35 0 11435 0.262 -1 RYLSPKYIKMF 11 43 487.93552613242105 NaN 0 487.935302734375 PEAK HCD FTMS 0 0 0 9171 24545.92578125 0.5172483136509611 -6 0.16483688354492188 9 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 5.868138319507137 0.3254739249913752 1 Y 1 -1 4.6041 0 0 0.47277 0 0 257.4991517748046 550.2736910455686 807.7728428203732 0 0 0 0 0 0 0 0 0 Y 0.47277 + + 2 + NaN NaN 109633.3 NaN 6738 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9181 46.25 NaN 44901 35 0 5921.3 0.261 -1 WSLCDTKDCG 10 33 621.2515147449342 1240.4884765566683 2 621.2520751953125 MULTI HCD FTMS 0 0 0 9171 31420.857421875 0.7494410455246141 -2 0.046115875244140625 10 2 Carbamidomethyl (C) _WSLC(Carbamidomethyl (C))DTKDC(Carbamidomethyl (C))G_ ENSG00000085832|ENST00000371733|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant 1.4819007175156935 0.4674597685733628 1 {M(Oxidation (M))|F}D 2 -1 7.0783 0 0 0.57061 0 0 449.192957613112 526.1681612604124 975.3611188735244 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D 0.57061 - 11 + NaN NaN 94758 NaN 6739 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9182 46.253 NaN 62710 35 0 5073.9 0.261 + -1 CDFLNWGNTF 10 33 637.2691179489134 1272.5236829646267 2 637.2687377929688 MULTI HCD FTMS 0 0 0 9171 34774.23828125 1 0 0 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 7.608950283845883 0.4350283211712914 1 QNT{M(Oxidation (M))|F} 4 -1 38.928 0 0 3.0591 0 0 764.2944203107437 0 764.2944203107437 0 31.938200260161125 0 0 0 0.5 0 0.5 0 QNT{M(Oxidation (M))|F} 3.0591 - 11 NaN NaN 95770.7 NaN 6740 2440 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9184 46.258 NaN 171450 35 0 14277 0.327 + 13117 KYLGQLHYL 9 50 567.8187048338807 1133.6228567345613 2 567.817626953125 MULTI HCD FTMS 0 0 0 9183 84728.0390625 0.310025527705994 -4 0.11548614501953125 1 Unmodified _KYLGQLHYL_ ENSG00000076201|ENST00000265562|PTPN23 52.268347100219714 0.028397529699942435 1 KY{I|L}{[QG]|[NA]}{I|L}HY{I|L} 9 0 + 55.908 0 0 4.9318 4.9318 89.198 0 0 0 26.967809330011434 11.39506772603255 11.39506772603255 20.204262829037837 0 2.004432191740108 0 0 0 + + KY{I|L}{[QG]|[NA]}{I|L}HY{I|L};{I|L}[YK]{[QG]|[NA]}{I|L}HY{I|L};K{[{M(Oxidation (M))|F}D]|MM}[KA]{I|L}HY{I|L};{I|L}[YN][KA]{I|L}HY{I|L};KY{I|L}{[QG]|[NA]}{[WN]|[YH]}{I|L}{I|L} 4.9318;3.1495;2.8102;2.4592;1.9309 +;-;-;-;- + 103 + NaN NaN 109902.8 NaN 6741 2441 9183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9185 46.263 NaN 141510 35 0 9343.2 0.261 + 33389 YGNTLVEFR 9 51 549.7815795741344 1097.5486062150687 2 549.7823486328125 MULTI HCD FTMS 0 0 0 9183 46668.234375 0.37397808495261237 -10 0.2868690490722656 2 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 34.40172386719151 0.0910440009062557 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 39.565 0 0 3.6048 0 0 563.306932517775 0 563.306932517775 0 32.60213141451892 0 0 0 1.305462187404089 0 0.7302046884880937 0 VTN{[DS]|[MA]|[CV]|TT} 3.6048 - 32 NaN NaN 99092.5 NaN 6742 2441 9183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9186 46.266 NaN 121200 35 0 16458 0.261 + 25933 SPDAEEPQL 9 34 493.2269878924745 984.439422851749 2 493.22698974609375 MULTI HCD FTMS 0 0 0 9183 67789.859375 1 0 0 3 Unmodified _SPDAEEPQL_ nc|ENSG00000148396|O15027-5|SEC16A 19.256988751693697 0.19398022840297344 1 EPQ{I|L} 4 5 23.94 0 0 2.4319 0 0 499.1907046758138 0 499.1907046758138 0 13.762874945799766 0 0 0 0.7742275032520141 0 0 0 + EPQ{I|L} 2.4319 + + 25 NaN NaN 99072.2 NaN 6743 2441 9183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9187 46.27 NaN 94615 35 0 16899 0.261 + 6034 FPDTLFNGF 9 35 529.2553165177549 1056.4960801023096 2 529.25439453125 MULTI HCD FTMS 0 0 0 9183 34522.7890625 0.3280631888741802 22 -0.3811531066894531 4 Unmodified _FPDTLFNGF_ ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1;nc|ENSG00000197381|P78563-6|ADARB1;nc|ENSG00000197381|P78563|ADARB1 10.823927491677226 0.26684000660059787 1 Y{M(Oxidation (M))|F} 2 8 25.217 0 0 2.3868 0 0 728.3863826919566 0 728.3863826919566 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 Y{M(Oxidation (M))|F} 2.3868 - 10 + NaN NaN 88539.7 NaN 6744 2441 9183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9188 46.273 NaN 94069 35 0 20398 0.261 + 25402 SEMDTSVKF 9 40 522.2390702905487 1042.4635876478974 2 522.2391967773438 MULTI HCD FTMS 0 0 0 9183 15193.0009765625 0.47071059915932095 2 -0.0493621826171875 5 Unmodified _SEMDTSVKF_ ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 21.536976647645854 0.1742816388551942 1 K{M(Oxidation (M))|F} 2 7 26.911 0 0 2.5815 0 0 749.287401267775 0 749.287401267775 0 12.958551976798967 0 0 0 0.5941876774005248 0 0 0 + K{M(Oxidation (M))|F} 2.5815 + + 19 NaN NaN 107278.4 NaN 6745 2441 9183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9190 46.278 NaN 857330 35 0 196810 0.327 + 23693 RQNLRKYFF 9 72 424.57175045416244 1270.6934219626874 3 424.5717468261719 MULTI HCD FTMS 0 0 0 9189 380133.53125 0.5213106442867539 10 -0.25806427001953125 1 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 17.11289562659939 0.2125047172822487 1 D{M(Oxidation (M))|F}E 3 -1 27.848 0 0 2.1916 0 0 861.5317306377447 0 861.5317306377447 0 2.1471904193289504 0 0 0 0 0 0.8807196863200843 0 D{M(Oxidation (M))|F}E 2.1916 - 51 NaN NaN 220456.6 NaN 6746 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9191 46.283 NaN 421380 35 0 40568 0.261 + 9131 HPHDLVILM 9 64 545.7893430940501 1089.5641332549 2 545.7892456054688 MULTI HCD FTMS 0 0 0 9189 190631.390625 0.8443060490216724 2 -0.05939483642578125 2 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 104.79918948944588 0.003791450360204016 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HD{I|L}V{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 77.665 0 0 7.1281 7.1281 86.586 0 0 0 2.998037644757048 56.46697777303585 2.998037644757048 3.0977185236079663 0 2.9634679910804405 0 1.566901560044258 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HD{I|L}V{I|L}{I|L}{M(Oxidation (M))|F};HPHD{I|L}V{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[NG]WV{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[NG]WKK{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HD{I|L}KK{[ES]|[DT]|[{I|L}C]};[H{I|L}]YGEKK{[ES]|[DT]|[{I|L}C]};H[WY]{I|L}[Y{I|L}][VP] 7.1281;6.8438;6.5377;1.2966;1.1073;0.49524;0.29415 +;+;-;-;-;-;- + 642 NaN NaN 141733.3 NaN 6747 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9192 46.286 NaN 256720 35 0 29776 0.261 + 29965 VFIDKQTNL 9 68 539.3006057313775 1076.5866585295548 2 539.3007202148438 MULTI HCD FTMS 0 0 0 9189 104436.1875 0.17091669164134252 7 -0.20690536499023438 3 Unmodified _VFIDKQTNL_ ENSG00000048740|ENST00000633077|CELF2;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319-3|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 42.312485326615175 0.05472917415473307 1 KD{I|L}D{I|L} 5 6 47.669 0 0 4.4278 0 0 474.24568373847814 0 474.24568373847814 0 29.508023872519953 0 0 0 1 0 0.6989700043360187 0.28872548999643577 KD{I|L}D{I|L} 4.4278 - 157 NaN NaN 122207.4 NaN 6748 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9193 46.289 NaN 234640 35 0 17076 0.261 + 22629 QVITKEYEL 9 72 561.8056068317154 1121.5966607302307 2 561.8057250976562 MULTI HCD FTMS 0 0 0 9189 115873.390625 0.8548290790702521 -1 0.019672393798828125 4 Unmodified _QVITKEYEL_ ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF;nc|ENSG00000136631|Q9NRW7-2|VPS45 38.175570920033316 0.07371992880350783 1 T[KQ]Y{M(Oxidation (M))|F}{I|L} 6 5 23.065 0 0 2.0564 0 0 323.18364150215 0 323.18364150215 0 2.2936437512489505 0 0 0 0 0 0.805462187404089 0.5 T[KQ]Y{M(Oxidation (M))|F}{I|L} 2.0564 - 105 NaN NaN 116822 NaN 6749 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9194 46.293 NaN 133600 35 0 35001 0.262 + 26335 SSDPGQPVL 9 33 450.2265174113347 NaN 0 450.22650146484375 PEAK HCD FTMS 0 0 0 9189 37497.21875 0.4089864045391996 3 -0.089111328125 5 Unmodified _SSDPGQPVL_ ENSG00000137393|ENST00000259939|RNF144B;nc|ENSG00000137393|Q7Z419-2|RNF144B 13.90604991867851 0.22786006501039813 1 A 1 9 3.4949 0 0 0.38899 0 0 396.31587554356946 428.05613123111567 824.3720067746851 0 0 0 0 0 0 0 0 0 A 0.38899 - 1 + NaN NaN 103634.9 NaN 6750 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9195 46.296 NaN 150460 35 0 14853 0.261 + 18349 MPLLRQEEL 9 56 572.8051408062785 1143.5957286793569 2 572.8053588867188 MULTI HCD FTMS 0 0 0 9189 77369.2890625 0.8668406778207116 -2 0.059360504150390625 6 Oxidation (M) _M(Oxidation (M))PLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 43.77239144664712 0.04802738721622131 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RQEE{I|L} 9 0 + 58.65 0 0 5.1286 5.1286 86.467 0 0 0 10.954839578393347 50.718421963928435 10.954839578393347 9.208187539523749 0 1.5 0 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RQEE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}R[AG]EE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RP]{[SA]|[TG]}{I|L}DE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RP]{[SA]|[TG]}VEE{I|L} 5.1286;4.3234;2.5745;2.4898 +;-;-;- + 395 NaN NaN 116074.3 NaN 6751 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9196 46.299 NaN 60575 35 0 4974.5 0.261 + 26218 SPTEVVERL 9 38 515.2817575885852 1028.5489622439702 2 515.281982421875 MULTI HCD FTMS 0 0 0 9189 21219.28515625 0.3105544457617648 4 -0.12541580200195312 7 Unmodified _SPTEVVERL_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 18.373094154950223 0.20161688160436167 1 [PS]TE[{I|L}V]DR{I|L} 9 2 + 36.628 0 0 3.5612 3.5612 81.68 0 0 0 15.659387198976596 11.395067726032558 11.395067726032558 4.77121254719663 0 0.8494850021680094 0 0.5 0 [PS]TE[{I|L}V]DR{I|L};[PS]TEVVER{I|L};[PS]TE{NN|[MP]|[D{I|L}]|[EV]}VR{I|L};{[DS]|[MA]|[CV]|TT}[DP][{I|L}V]DR{I|L};{[DS]|[MA]|[CV]|TT}[DP]VVER{I|L};{[DS]|[MA]|[CV]|TT}[DP]{NN|[MP]|[D{I|L}]|[EV]}VR{I|L} 3.5612;3.0973;2.8816;1.8374;1.3735;1.1578 -;+;-;-;-;- + 56 + NaN NaN 91149.5 NaN 6752 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9197 46.303 NaN 29046 35 0 7001.7 0.261 + 18070 MMFQSWYEL 9 19 617.766732877739 1233.5189128222778 2 617.7322387695312 MULTI HCD FTMS 0 0 0 9189 8903.248046875 0.06853009605867191 39 -0.7330589294433594 8 Unmodified _MMFQSWYEL_ REV__ENSG00000161800|ENST00000312377|RACGAP1 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82195.2 NaN 6753 2442 9189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9199 46.308 NaN 341980 35 0 45103 0.327 + 472 ALQKFYRGEF 10 56 420.2241814121728 NaN 0 420.21685791015625 PEAK HCD FTMS 0 0 0 9198 4201.2255859375 0.057169771052744886 -5 0.13516616821289062 1 Unmodified _ALQKFYRGEF_ ENSG00000152620|ENST00000381937|NADK2;nc|ENSG00000152620|Q4G0N4-2|NADK2;nc|ENSG00000152620|Q4G0N4-3|NADK2 7.477065608646677 0.333784957163546 1 V{M(Oxidation (M))|F} 2 9 7.0783 0 0 0.84423 0 0 56.014067619898306 533.2536104791624 589.2676780990607 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.84423 - 12 + NaN NaN 132073.3 NaN 6754 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9200 46.312 NaN 118610 35 0 16857 0.261 + 6855 FPTIHGNDEV 10 46 564.7695795890761 1127.524606244952 2 564.769287109375 MULTI HCD FTMS 0 0 0 9198 60706.87890625 1 0 0 2 Unmodified _FPTIHGNDEV_ ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF 20.580933911654288 0.31860490502175054 1 E[RN]DEV 6 6 26.898 0 0 2.3856 0 0 367.1674977033219 0 367.1674977033219 0 5.9286373909302625 0 0 0 0 0 0 0.3252574989159953 E[RN]DEV 2.3856 - 22 NaN NaN 96739.1 NaN 6755 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9201 46.316 NaN 55368 35 0 4745.5 0.261 + 17796 MFGLCCNKSLF 11 30 631.789734425009 1261.5649159168179 2 631.7894897460938 MULTI HCD FTMS 0 0 0 9198 40969.84375 0.6842550577448748 6 -0.177215576171875 3 Unmodified _MFGLCCNKSLF_ ENST00000265350.8_2_6:41874346-41874502:-|nuORF 10.799506525563784 0.36298595732910816 1 KS{I|L}{M(Oxidation (M))|F} 4 7 36.67 0 0 2.9067 0 0 768.275194236525 0 768.275194236525 0 31.18562527100117 0 0 0 0 0 0.4247425010840047 0.3494850021680094 + KS{I|L}{M(Oxidation (M))|F} 2.9067 + + 8 NaN NaN 96008.5 NaN 6756 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9202 46.319 NaN 88185 35 0 10034 0.263 + 17725 MCPRPLPAL 9 39 499.2696027157437 996.5246524982874 2 500.2894592285156 MULTI HCD FTMS 0 0 0 9198 6320.55712890625 0.03453336526016448 16 -0.2913055419921875 4 Unmodified _MCPRPLPAL_ REV__ENSG00000249715|ENST00000624922|FER1L5 4.75600775471527 0.31496297302216103 1 P[{I|L}A] 3 -1 9.9338 0 0 0.99684 0 0 697.3398615770476 0 697.3398615770476 0 2.944087325889983 0 0 0 0.4247425010840047 0 0 0 P[{I|L}A] 0.99684 + + 6 + NaN NaN 96780.6 NaN 6757 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9203 46.322 NaN 155210 35 0 14172 0.261 + 30691 VPEPDGHII 9 37 488.7587728593782 975.5029927855564 2 488.75897216796875 MULTI HCD FTMS 0 0 0 9198 45394.11328125 0.5451614679835605 -6 0.16484832763671875 5 Unmodified _VPEPDGHII_ ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D 37.97399986684836 0.07464525285885698 1 VPEP 4 5 39.285 0 0 4.0271 0 0 0 550.2643526666624 550.2643526666624 5.924778212679485 0 0 0 0 0.805462187404089 0 0.3807196863200844 0 + VPEP 4.0271 + + 42 + NaN NaN 119560.9 NaN 6758 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9204 46.326 NaN 44097 35 0 7324 0.261 + 8598 HAYDGKDYISL 11 25 641.3091542477771 1280.603755562354 2 641.3084106445312 MULTI HCD FTMS 0 0 0 9198 30731.765625 0.4520779653614977 -3 0.08905029296875 6 Unmodified _HAYDGKDYISL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 18.721224879955976 0.29396376558286563 1 HAYD 4 7 39.68 0 0 3.0986 0 0 0 791.3875216119749 791.3875216119749 39.680475292681265 0 0 0 0 0.9247425010840047 0 0 0 + HAYD 3.0986 + + 11 + NaN NaN 90604 NaN 6759 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9205 46.329 NaN 55606 35 0 8229.4 0.263 + 17661 MADAASPCSVV 11 33 525.7318937700389 1049.4492346068778 2 525.7318115234375 MULTI HCD FTMS 0 0 0 9198 27500.8984375 0.8104942218485065 4 -0.13188552856445312 7 Unmodified _MADAASPCSVV_ ENSG00000172009|ENST00000307741|THOP1;THOP1|p.E107Sfs*8|1|0.04|ENSG00000172009|chr19:2794846-2794847|-/CTCTC|frameshift_variant 12.240655878213236 0.35042917576941135 1 MAD 3 8 40.662 0 0 3.8746 0 0 0 729.3204439752561 729.3204439752561 33.672137691284405 0 0 0 0 0.5 1.3979400086720375 0 0 + MAD 3.8746 + + 12 + NaN NaN 93215.3 NaN 6760 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9206 46.332 NaN 37017 35 0 6075.6 0.261 + 16436 LSMQAEATI 9 23 482.24537245670734 962.4761919802147 2 482.2442321777344 MULTI HCD FTMS 0 0 0 9198 24205.265625 1 0 0 8 Unmodified _LSMQAEATI_ ENSG00000130943|ENST00000253255|PKDREJ 5.296884461304476 0.3108627248283497 1 A 1 8 7.4743 0 0 0.77656 0 0 432.22522870072095 456.20136438541255 888.4265930861335 0 0 0 0 0 0.3494850021680094 0 0 0 + A 0.77656 + + 1 + NaN NaN 88343.9 NaN 6761 2443 9198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9208 46.338 NaN 157500 35 0 28817 0.327 + 24098 RYALQMEQL 9 50 584.2949949494048 1166.5754369656095 2 584.2950439453125 MULTI HCD FTMS 0 0 0 9207 71032.46875 0.2643017895586887 18 -0.29276275634765625 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 57.24910588100465 0.021429789259086996 1 M{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 7 3 65.961 0 0 5.6543 0 0 259.154100486525 0 259.154100486525 0 62.862526176977056 0 0 0 1.274227503252014 0 0 0.4247425010840047 M{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 5.6543 - 122 NaN NaN 128495.1 NaN 6762 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9209 46.342 NaN 193820 35 0 40438 0.264 + 16338 LRNSCRTRKI 10 53 416.2435305890866 1245.70876236746 3 416.2433776855469 MULTI HCD FTMS 0 0 0 9207 30061.642578125 0.054571965598712385 89 -2.1952133178710938 2 Unmodified _LRNSCRTRKI_ REV__ENST00000523483.5_2_8:59490700-59490754:+|nuORF 3.5870582119611467 0.4563168352879256 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.243 0 0 1080.6300097813255 0 1080.6300097813255 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.243 - 16 + NaN NaN 131453.4 NaN 6763 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9210 46.346 NaN 90403 35 0 15351 0.261 + 23574 RPDTLDPAL 9 26 499.2696027157437 996.5246524982874 2 499.26885986328125 MULTI HCD FTMS 0 0 0 9207 48812.4453125 0.0390567794693733 17 -0.2740364074707031 3 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 13.042465956692817 0.2476723265019929 1 PA{I|L} 3 6 31.198 0 0 3.1307 0 0 697.3396075721339 0 697.3396075721339 0 26.593793813122062 0 0 0 0.5 0 0 0 + PA{I|L} 3.1307 + + 18 NaN NaN 96874.3 NaN 6764 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9211 46.349 NaN 68775 35 0 4975.9 0.261 + 18973 NAMEDAQTL 9 40 496.7211452796944 991.4277376261888 2 496.72137451171875 MULTI HCD FTMS 0 0 0 9207 27150.607421875 0.44420953638456395 3 -0.10218048095703125 4 Unmodified _NAMEDAQTL_ ENSG00000196975|ENST00000394295|ANXA4;nc|ENSG00000196975|P09525|ANXA4 8.155526934196011 0.2891920862272901 1 T{I|L} 2 7 18.756 0 0 1.8918 0 0 759.2877064435562 0 759.2877064435562 0 8.298122174395031 0 0 0 0.3807196863200844 0 0 0 + T{I|L} 1.8918 + + 12 NaN NaN 102590.3 NaN 6765 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9212 46.352 NaN 43358 35 0 4267 0.261 -1 NWLCRKQR 8 35 580.809326171875 NaN 0 580.809326171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _NWLC(Carbamidomethyl (C))RKQR_ ENST00000507392.5_1_5:134154688-134162687:+|nuORF 2.302733041254933 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.60277 0 0 300.1248733380874 743.3685396783811 1043.4934130164686 0 0 0 0 0 0 0 0 0 {I|L} 0.60277 + + 2 + NaN NaN 86796.5 NaN 6766 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9213 46.356 NaN 67824 35 0 4759 0.261 -1 YAPHVRICM 9 39 553.2697396125037 NaN 0 553.269775390625 PEAK HCD FTMS 0 0 0 9207 29607.390625 0.4717855803700142 -3 0.07906723022460938 6 Oxidation (M) _YAPHVRICM(Oxidation (M))_ ENSG00000133105|ENST00000298386|RXFP2;nc|ENSG00000133105|Q8WXD0-2|RXFP2 4.3292370932331545 0.2742679634796037 1 SVHMV 5 -1 19.526 0 0 1.7678 0 0 148.0706436332827 400.1616610162719 548.2323046495546 0 0 0 0 0 0 0 0.5 0 SVHMV 1.7678 - 43 + NaN NaN 90925.8 NaN 6767 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9214 46.359 NaN 39960 35 0 5956 0.262 + 3914 EPRTMFSLDTY 11 35 453.87999648011066 NaN 0 453.8796081542969 PEAK HCD FTMS 0 0 0 9207 14129.1640625 0.6349770841004516 12 -0.23501968383789062 7 Unmodified _EPRTMFSLDTY_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 2.843284757254958 0.33405456343542356 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113050.4 NaN 6768 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9215 46.362 NaN 28615 35 0 4419 0.261 -1 VNTSCQNYDM 10 26 624.2367382665649 NaN 0 624.2363891601562 PEAK HCD FTMS 0 0 0 9207 11985.4189453125 0.8476828853628788 7 -0.18606948852539062 8 Carbamidomethyl (C),Oxidation (M) _VNTSC(Carbamidomethyl (C))QNYDM(Oxidation (M))_ ENSG00000164494|ENST00000369037|PDSS2;nc|ENSG00000164494|Q86YH6-2|PDSS2 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91198.2 NaN 6769 2444 9207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9217 46.367 NaN 3441200 35 0 400270 0.327 + 541 APEEHPVLL 9 110 502.7741653025147 1003.5337776718294 2 502.7740783691406 MULTI HCD FTMS 0 0 0 9216 2139399.25 0.02051778461171369 -11 0.3133087158203125 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 125.62461146993168 0.0008703235425492373 1 [PA]EEHPV{I|L}{I|L} 9 0 + 79.342 0 0 7.9062 7.9062 87.995 0 0 0 3.4678748622465605 3.4678748622465605 3.4678748622465605 3.4678748622465605 0 2.1237125054200234 1.2218487496163564 1.0356668758921828 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[VP]DDHPV{I|L}{I|L};[VP]HDDPV{I|L}{I|L};[EP]AEH{I|L}VP{I|L};[VP]HEEPA{I|L}{I|L};[EP]EAH{I|L}VP{I|L} 7.9062;7.5607;6.8073;6.459;6.4071;6.2412;5.3425;5.3082;5.2624;4.9599 +;+;-;-;-;-;-;-;-;- + 3067 NaN NaN 610311.4 NaN 6770 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9218 46.372 NaN 315780 35 0 31727 0.261 + 18193 MPDLPEKL 8 69 479.7494376495878 957.4843223659756 2 479.74908447265625 MULTI HCD FTMS 0 0 0 9216 192359.125 0.5699090060924005 -7 0.19458770751953125 2 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 55.50274090549119 0.09370106398411177 1 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 54.421 0 0 5.6838 5.6838 84.857 0 0 0 4.974250108400469 4.974250108400469 4.974250108400469 4.974250108400469 0 2.0356668758921828 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P[K{I|L}]E 5.6838;5.1643;1.9258 +;+;- + 154 + NaN NaN 131483.1 NaN 6771 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9219 46.375 NaN 288660 35 0 52265 0.261 + 33748 YLERVNTF 8 62 521.2714176325585 1040.528282331917 2 521.2536010742188 MULTI HCD FTMS 0 0 0 9216 4121.8759765625 0.056431792205269636 12 -0.21254348754882812 3 Unmodified _YLERVNTF_ REV__ENSG00000179855|ENST00000644452|GIPC3;REV__GIPC3|p.G94Vfs*3|1|0.11|ENSG00000179855|chr19:3586545-3586545|G/-|frameshift_variant 13.50788311687929 0.4944073034352369 1 T{M(Oxidation (M))|F} 2 -1 19.631 0 0 1.8866 0 0 774.4027157809388 0 774.4027157809388 0 12.641164786613448 0 0 0 0 0 0.28872548999643577 0 T{M(Oxidation (M))|F} 1.8866 + + 150 + NaN NaN 131985 NaN 6772 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9220 46.379 NaN 131080 35 0 27009 0.261 + 16213 LPVTTTPSLS 10 44 508.2867018429693 1014.5588507527386 2 508.2869567871094 MULTI HCD FTMS 0 0 0 9216 44863.671875 1 0 0 4 Unmodified _LPVTTTPSLS_ ENST00000357203.7_1_3:50604919-50605126:-|nuORF 19.256988751693697 0.33098864134661865 1 {I|L}P 2 8 22.959 0 0 2.2629 0 0 0 801.4013325537695 801.4013325537695 12.781512503836439 0 0 0 0 0.3494850021680094 0 0 0 + {I|L}P 2.2629 + + 12 + NaN NaN 99166.4 NaN 6773 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9221 46.382 NaN 77063 35 0 10231 0.261 + 24577 RYLNKSFVL 9 40 570.3320097610009 1138.6494665888017 2 570.3321533203125 MULTI HCD FTMS 0 0 0 9216 21451.521484375 0.34236082416125924 4 -0.11779403686523438 5 Unmodified _RYLNKSFVL_ ENSG00000132623|ENST00000378392|ANKEF1 5.731851221503515 0.3075653528928475 1 KS{M(Oxidation (M))|F}[{I|L}V] 5 4 14.693 0 0 1.2904 0 0 546.2899647443375 0 546.2899647443375 0 9.208187539523749 0 0 0 0 0 0 0 + KS{M(Oxidation (M))|F}[{I|L}V] 1.2904 + + 23 NaN NaN 115692.7 NaN 6774 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9222 46.385 NaN 91653 35 0 7258.8 0.261 + 33579 YINDNEPTF 9 44 556.7486703982394 1111.4827878632786 2 556.2473754882812 MULTI HCD FTMS 0 0 0 9216 14602.1640625 0.560832981201842 1 -0.036304473876953125 6 Unmodified _YINDNEPTF_ CDH10|p.D152Y|1|0.31|ENSG00000040731|chr5:24537452-24537452|C/A|missense_variant 6.723162845929126 0.3000504726104499 1 QED 3 8 20.445 0 0 1.8395 0 0 133.100993900182 603.2345675104124 736.3355614105944 0 0 0 0 0 0 0 0.4247425010840047 0 QED 1.8395 - 39 + NaN NaN 107087.5 NaN 6775 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9223 46.389 NaN 62633 35 0 14924 0.262 -1 KYLEDMKTYF 10 24 451.88461564810007 1352.6320175445003 3 452.21942138671875 MULTI HCD FTMS 0 0 0 9216 5196.6142578125 0.14613694237044828 -2 0.059421539306640625 7 Oxidation (M) _KYLEDM(Oxidation (M))KTYF_ ENSG00000242550|ENST00000238508|SERPINB10 3.072263186857199 0.4590417271953214 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.6257 0 0 1187.553295475944 0 1187.553295475944 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6257 + + 2 + NaN NaN 90514.6 NaN 6776 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9224 46.392 NaN 51492 35 0 8847.2 0.261 -1 RADQFEYVM 9 26 587.7633580190948 1173.5121631049894 2 587.7630615234375 MULTI HCD FTMS 0 0 0 9216 23442.31640625 0.05348456838051628 63 -1.4445533752441406 8 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 5.731851221503515 0.3075653528928475 1 YV{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.6585 0 0 746.3345814435562 0 746.3345814435562 0 24.20818753952375 0 0 0 0.5 0 0 0 YV{M(Oxidation (M))|F} 2.6585 + + 6 NaN NaN 98621.7 NaN 6777 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9225 46.395 NaN 34787 35 0 7610.5 0.261 -1 WFDDVDPADI 10 15 617.766732877739 1233.5189128222778 2 617.767578125 MULTI HCD FTMS 0 0 0 9216 13710.369140625 0.105531476744228 42 -0.8194694519042969 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WFDDVDPADI_ ENSG00000148300|ENST00000371942|REXO4;ENST00000559109.2_1_15:31745531-31745762:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90181.1 NaN 6778 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9226 46.398 NaN 19526 35 0 3965.9 0.261 + -1 HLHCERTTR 9 16 605.3005373142522 1208.5865216953043 2 605.3008422851562 MULTI HCD FTMS 0 0 0 9216 20166.38671875 0.48937574151502067 8 -0.17824554443359375 10 Carbamidomethyl (C) _HLHC(Carbamidomethyl (C))ERTTR_ REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85240.1 NaN 6779 2445 9216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9228 46.403 NaN 388400 35 0 34262 0.327 + 13118 KYLGQLHYL 9 61 567.8187048338807 1133.6228567345613 2 567.8187255859375 MULTI HCD FTMS 0 0 0 9227 257033.71875 0.9405034646785739 1 -0.036159515380859375 1 Unmodified _KYLGQLHYL_ ENSG00000076201|ENST00000265562|PTPN23 112.59319219568356 0.00251905749371435 1 [YK]{I|L}{[QG]|[NA]}{I|L}HY{I|L} 9 0 + 67.507 0 0 5.9549 5.9549 86.1 0 0 0 6.910976904085814 6.910976904085814 6.910976904085814 6.910976904085814 0 2.4247425010840047 0 0 1.9436726795685342 + + [YK]{I|L}{[QG]|[NA]}{I|L}HY{I|L};KY{I|L}{[QG]|[NA]}{I|L}HY{I|L};{I|L}[YK]{[QG]|[NA]}{I|L}HY{I|L};{[WN]|[YH]}{I|L}{[QG]|[NA]}{I|L}KY{I|L};[H{I|L}]Y{[QG]|[NA]}{I|L}KY{I|L};{[WN]|[YH]}{I|L}{[QG]|[NA]}{I|L}YK{I|L};[H{I|L}]Y{[QG]|[NA]}{I|L}YK{I|L} 5.9549;5.3453;3.5821;2.6717;2.296;1.5015;1.1257 +;+;-;-;-;-;- + 185 NaN NaN 151938.7 NaN 6780 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9229 46.408 NaN 1366200 35 0 183070 0.262 + 24772 RYPDNLKHLYL 11 93 477.9297349146328 1430.7673753440984 3 477.92950439453125 MULTI HCD FTMS 0 0 0 9227 488229.15625 0.26671118302316993 -6 0.18477630615234375 2 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 52.73520976341228 0.0701864120076788 1 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 83.076 0 0 5.8064 5.8064 86.795 0 0 0 3.845760471140565 54.871772095825875 3.845760471140565 9.128498242811006 0 2.288106835214472 0 0.8494850021680094 0.75 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KHY{I|L}{I|L};[YR][DP]GG{I|L}KHY{I|L}{I|L};{[TV]|[{I|L}S]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]H{I|L}Y{I|L};{[TV]|[{I|L}S]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]HY{I|L}{I|L} 5.8064;5.1684;4.9497;4.3117;4.0647;3.2079 +;-;-;-;-;- + 794 NaN NaN 295363.4 NaN 6781 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9230 46.411 NaN 200510 35 0 21693 0.261 + 11123 IYIKQIKTF 9 56 577.3525994629265 1152.690645992653 2 577.3526000976562 MULTI HCD FTMS 0 0 0 9227 118370.5 0.6014154759230165 3 -0.08148956298828125 3 Unmodified _IYIKQIKTF_ ENSG00000103479|ENST00000262133|RBL2 63.227496030279354 0.01306643085373406 1 {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F} 9 0 + 85.759 0 0 7.4399 7.4399 90.596 0 0 0 64.79032506370174 15.999161495794425 15.999161495794425 9.208187539523749 0 2.4489700043360187 2 0.6989700043360187 0 + + {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F};{I|L}Y{I|L}K[AG]{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}KQ{I|L}KT{M(Oxidation (M))|F} 7.4399;6.6411;5.7216 +;-;+ + 86 + NaN NaN 132440 NaN 6782 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9231 46.415 NaN 850180 35 0 116160 0.261 + 1134 AYLEAHETF 9 60 540.7535318385532 1079.4925107439062 2 540.7534790039062 MULTI HCD FTMS 0 0 0 9227 342216.9375 0.14999922746769828 -5 0.14508819580078125 4 Unmodified _AYLEAHETF_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 128.3654064809346 0.00070410514679239 1 AY{I|L}EAHET{M(Oxidation (M))|F} 9 0 + 99.509 0 0 9.2181 9.2181 94.065 0 0 0 53.49514231574189 14.973024840566467 14.973024840566467 9.590810289266884 0 2.868415180652539 2 1.274227503252014 0 + + AY{I|L}EAHET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAHET{M(Oxidation (M))|F};N{[RE]|[WV]}{I|L}[DG]ET{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[ES]|[DT]|[{I|L}C]}[C(Carbamidomethyl (C))N]{I|L}C{I|L};N{[RE]|[WV]}{I|L}E{[DS]|[MA]|[CV]|TT}A{M(Oxidation (M))|F} 9.2181;8.3296;2.9557;2.1134;1.9992 +;+;-;-;- + 986 + NaN NaN 213025.3 NaN 6783 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9232 46.418 NaN 207780 35 0 17212 0.263 + 29852 VEYIGADKKSF 11 72 419.55565402834554 1255.6451326852366 3 419.5556640625 MULTI HCD FTMS 0 0 0 9227 98998.9921875 0.2609686194397075 37 -0.6718177795410156 5 Unmodified _VEYIGADKKSF_ REV__ENSG00000101605|ENST00000356443|MYOM1;REV__nc|ENSG00000101605|P52179-2|MYOM1 7.608950283845883 0.38555039536024605 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.6913 0 0 1090.5661969936334 0 1090.5661969936334 0 5.039237471316298 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 29 + NaN NaN 111490.5 NaN 6784 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9233 46.421 NaN 123010 35 0 16098 0.261 + 34414 YPESESIMM 9 41 559.7225633106935 1117.430573688187 2 559.722900390625 MULTI HCD FTMS 0 0 0 9227 78328.4453125 0.5154286610271003 -5 0.14508819580078125 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 48.345845343767074 0.03388484103555672 1 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 60.433 0 0 5.4082 0 0 605.2339001357653 0 605.2339001357653 0 53.44335023848103 0 0 0 2 0 0.8494850021680094 0 + S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4082 + + 107 NaN NaN 101691.8 NaN 6785 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9234 46.425 NaN 151930 35 0 12000 0.264 + 26411 STDHIPILYR 10 53 405.5555862635325 1213.6449293907976 3 405.5557861328125 MULTI HCD FTMS 0 0 0 9227 44368.62109375 0.36717108443019913 -2 0.06602096557617188 7 Unmodified _STDHIPILYR_ ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1 22.774965066868997 0.29808267786580567 1 P{I|L}{I|L}[YR] 5 5 24.208 0 0 1.9947 0 0 553.2497323513359 0 553.2497323513359 0 16.249387366083 0 0 0 0.5 0 0 0 + P{I|L}{I|L}[YR] 1.9947 + + 64 + NaN NaN 118306.9 NaN 6786 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9235 46.428 NaN 112250 35 0 17135 0.261 + 29437 TYTDVTPRQF 10 36 614.3044102975474 1226.5942676618947 2 614.3034057617188 MULTI HCD FTMS 0 0 0 9227 32948.9140625 0.39277614886572554 -2 0.06602096557617188 8 Unmodified _TYTDVTPRQF_ ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF 38.61474834105838 0.1574278268413918 1 [YT]TDVT 6 4 64.526 0 0 5.2606 0 0 0 543.2685146659618 543.2685146659618 53.72872192056825 0 0 0 0 1.610924374808178 2 0 0 + [YT]TDVT 5.2606 + + 29 + NaN NaN 96958 NaN 6787 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9236 46.431 NaN 42190 35 0 5623.8 0.261 + -1 CDFLNWGNTF 10 26 637.2692260742188 NaN 0 637.2692260742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 2.498486711656943 0.3380459306859131 1 TNQ 3 -1 16.198 0 0 1.2729 0 0 165.080078687126 761.2723482721311 926.3524269592572 0 0 0 0 0 0 0 0 0 TNQ 1.2729 - 8 + NaN NaN 87497 NaN 6788 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9237 46.435 NaN 16900 35 0 4183 0.261 + 33234 YFFDEWMFG 9 17 621.2518920898438 NaN 0 621.2518920898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _YFFDEWMFG_ ENSG00000135577|ENST00000258042|NMBR 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85268.1 NaN 6789 2446 9227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9239 46.439 NaN 658070 35 0 135300 0.327 + 23694 RQNLRKYFF 9 66 424.57175045416244 1270.6934219626874 3 424.5718688964844 MULTI HCD FTMS 0 0 0 9238 256665.078125 0.3519874629403763 15 -0.190582275390625 1 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 23.756 0 0 1.8695 0 0 958.5461189572421 0 958.5461189572421 0 5.172203223519531 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8695 + + 16 + NaN NaN 194723.9 NaN 6790 2447 9238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9240 46.444 NaN 482420 35 0 47947 0.261 + 9132 HPHDLVILM 9 57 545.7893430940501 1089.5641332549 2 545.789306640625 MULTI HCD FTMS 0 0 0 9238 161660.921875 0.7159959006855328 7 -0.11823272705078125 2 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 77.98433622928108 0.006504613272346738 1 {[QN]|[E{I|L}]|[KN]}QC[KP]{I|L}{I|L}{M(Oxidation (M))|F} 9 6 + 56.493 0 0 5.1849 5.1849 82.902 0 0 0 2.695724146964089 6.916626294234156 2.695724146964089 2.695724146964089 0 1.5 1.154901959985743 1.1861818737241734 0 {[QN]|[E{I|L}]|[KN]}QC[KP]{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HD{I|L}V{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[AG]C[KP]{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG][NP]V{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]V[NP]{I|L}{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WR]V{I|L}{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}EV{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP][NP]{I|L}{I|L}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[TA][WP]{I|L}{I|L}{M(Oxidation (M))|F} 5.1849;4.9375;4.3398;4.2292;4.0676;3.9683;3.7872;3.395;2.3313 -;+;-;-;-;-;-;-;- + 381 NaN NaN 172351.8 NaN 6791 2447 9238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9241 46.447 NaN 353550 35 0 52955 0.261 + 18958 NAIEQDYRL 9 82 561.2827946836651 1120.55103643413 2 561.2827758789062 MULTI HCD FTMS 0 0 0 9238 204329.65625 0.9097928092329677 -1 0.036159515380859375 3 Unmodified _NAIEQDYRL_ ENSG00000133216|ENST00000374630|EPHB2;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000196411|ENST00000358173|EPHB4;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2;nc|ENSG00000154928|P54762-5|EPHB1 67.08073823543168 0.010032840856489532 1 {[QG]|[NA]}{I|L}EQDYR{I|L} 9 0 + 72.653 0 0 6.4836 6.4836 89.47 0 0 0 54.236198114355645 12.286436034817086 12.286436034817086 9.208187539523756 0 2.56295299324845 0 0.3252574989159953 0.48965182871044377 + + {[QG]|[NA]}{I|L}EQDYR{I|L};{[QG]|[NA]}{I|L}E[AG]DYR{I|L};{[QG]|[NA]}{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{NN|[MP]|[D{I|L}]|[EV]}R{I|L} 6.4836;5.6619;2.7644 +;-;- + 334 + NaN NaN 136939.5 NaN 6792 2447 9238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9242 46.451 NaN 315230 35 0 46119 0.261 + 1082 AYIERMNYI 9 60 594.7896900179466 1187.564827102693 2 594.79052734375 MULTI HCD FTMS 0 0 0 9238 113578.5078125 0.26840657717595434 -9 0.26705169677734375 4 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 57.72198328787511 0.020768266150574023 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{I|L} 9 0 + 62.386 0 0 5.2533 5.2533 85.107 0 0 0 7.435012637084171 7.435012637084171 7.435012637084171 7.435012637084171 0 2.1989700043360187 2 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERS{[CA]|SS}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}D[YT]C{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}D[YT]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER[YQ][{M(Oxidation (M))|F}V];[YT][YQ]RE{I|L}C{I|L};[YT][YQ]REC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG][YQ][{M(Oxidation (M))|F}V];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}WW{[CA]|SS}Y{I|L} 5.2533;4.6272;4.326;4.1418;4.1254;4.1244;3.5299;3.35;3.2314 +;-;-;-;-;-;-;-;- + 202 NaN NaN 127237.9 NaN 6793 2447 9238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9243 46.454 NaN 144610 35 0 11255 0.261 + 33390 YGNTLVEFR 9 58 549.7815795741344 1097.5486062150687 2 549.7824096679688 MULTI HCD FTMS 0 0 0 9238 85536.1484375 0.6854479372379007 -4 0.13188552856445312 5 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 41.8396318013385 0.056899836730939755 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 48.015 0 0 4.3748 0 0 563.3054066388687 0 563.3054066388687 0 32.95371572735597 0 0 0 1.4247425010840047 0 0.7302046884880937 0.4247425010840047 VTN{[DS]|[MA]|[CV]|TT} 4.3748 - 45 NaN NaN 99992.9 NaN 6794 2447 9238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9244 46.457 NaN 37106 35 0 5800.2 0.261 + -1 SMSAEVFSNKF 11 25 631.789734425009 1261.5649159168179 2 631.7913818359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _SM(Oxidation (M))SAEVFSNKF_ REV__ENSG00000042445|ENST00000295802|RETSAT 4.897010918128616 0.3974440401582579 1 S{I|L}{M(Oxidation (M))|F} 3 -1 21.427 0 0 1.6984 0 0 896.36332900215 0 896.36332900215 0 21.42667503568731 0 0 0 0 0 0 0 S{I|L}{M(Oxidation (M))|F} 1.6984 - 4 NaN NaN 106739.3 NaN 6795 2447 9238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9246 46.462 NaN 643180 35 0 123680 0.327 + -1 MPQAMSFVM 9 65 529.2298199023229 1056.4450868714457 2 529.2295532226562 MULTI HCD FTMS 0 0 0 9245 258590.375 0.2958573001730475 -16 0.4677467346191406 1 Oxidation (M) _MPQAMSFVM(Oxidation (M))_ REV__ENSG00000135912|ENST00000392102|TTLL4;REV__TTLL4|p.E531Vfs*13|1|0.09|ENSG00000135912|chr2:218740161-218740162|-/TCACAGTT|frameshift_variant 39.957323273324995 0.06554068735427583 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}PV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 -1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}P + + 32.467 -4.3136 -0.7897 3.0732 3.0732 59.318 0 0 0 0 16.269184659718547 0 0 0 0.805462187404089 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}PV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.0732 - 152 + NaN NaN 179690.1 NaN 6796 2448 9245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9247 46.466 NaN 351670 35 0 20129 0.261 + 34225 YPDRIMNTF 9 65 586.7738327790339 1171.5331126248677 2 587.275390625 MULTI HCD FTMS 0 0 0 9245 140626.5 0.04460756231669461 -17 0.49077606201171875 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 97.74103586103693 0.004323122048066454 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 78.519 0 0 6.7022 6.7022 85.459 0 0 0 2.40778928100886 2.40778928100886 2.40778928100886 2.40778928100886 0 2.8737125054200234 1.2218487496163564 1.3243923658886187 0.9247425010840047 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 6.7022;6.4967;5.979;5.7107;5.6386;5.2997;5.2941;5.193;4.6104;4.5137 +;+;-;-;-;-;-;-;-;- + 1642 + NaN NaN 128613.3 NaN 6797 2448 9245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9248 46.47 NaN 436710 35 0 45445 0.261 + 584 APEREGSPAL 10 62 513.7651112619699 1025.5156695907397 2 513.7659912109375 MULTI HCD FTMS 0 0 0 9245 125177.46875 0.2164765706671601 -5 0.15454483032226562 3 Unmodified _APEREGSPAL_ REV__ENST00000372491.3_1_9:131940446-131940530:-|nuORF 14.405379775768559 0.37636895476610294 1 APEEH 5 -1 36.502 0 0 3.5594 0 0 0 459.25906415356707 459.25906415356707 9.67925002484727 0 0 0 0 1.055462187404089 0 0.3807196863200844 0 APEEH 3.5594 - 100 + NaN NaN 158688.8 NaN 6798 2448 9245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9249 46.473 NaN 260970 35 0 24760 0.261 + 30692 VPEPDGHII 9 61 488.7587728593782 975.5029927855564 2 488.7589111328125 MULTI HCD FTMS 0 0 0 9245 18546.73828125 0.22273740661191577 -1 0.0226593017578125 4 Unmodified _VPEPDGHII_ ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D 19.256988751693697 0.19398022840297344 1 VPE{I|L}D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 8 5 + 29.964 0 0 3.0716 3.0716 86.775 0 0 0 15.526778562728161 1.5153188704894731 1.5153188704894731 18.079503613761226 0 0.6421590589602533 0 0 0 VPE{I|L}D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WE][TA]{I|L}{I|L};[EP]V[DP]{[HG]|PP}{I|L}{I|L} 3.0716;1.2183;0.67846 -;-;- 83 + NaN NaN 121492.4 NaN 6799 2448 9245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9250 46.477 NaN 38069 35 0 5454.1 0.261 + 8599 HAYDGKDYISL 11 22 641.3088989257812 NaN 0 641.3088989257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _HAYDGKDYISL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 11.517880264261096 0.3094472341343096 1 YD 2 9 19.776 0 0 1.5443 0 0 208.09812700607023 791.3954561822874 999.4935831883577 0 0 0 0 0 0.8807196863200843 0 0 0 + YD 1.5443 + + 4 + NaN NaN 90958.3 NaN 6800 2448 9245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9251 46.48 NaN 113320 35 0 14130 0.263 + -1 VKKHIDMK 8 46 507.7939453125 NaN 0 507.7939453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _VKKHIDM(Oxidation (M))K_ REV__ATP5C1-MGEA5|1|fusion;REV__ATP5C1-MGEA5|2|fusion;REV__ENSG00000198408|ENST00000361464|OGA;REV__nc|ENSG00000198408|O60502-2|OGA;REV__nc|ENSG00000198408|O60502-4|OGA 2.302733041254933 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.68961 0 0 228.16650835025672 685.3322847955686 913.4987931458254 0 0 0 0 0 0 0 0 0 P 0.68961 - 5 + NaN NaN 107491.6 NaN 6801 2448 9245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9253 46.485 NaN 1234300 35 0 128550 0.327 + 30744 VPLAVCGSA 9 100 437.22698293816285 NaN 0 437.2193908691406 PEAK HCD FTMS 0 0 0 9252 26289.91015625 0.10235985547315253 -10 0.286041259765625 1 Carbamidomethyl (C) _VPLAVC(Carbamidomethyl (C))GSA_ REV__ENSG00000145916|ENST00000313386|RMND5B;REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF;REV__ENST00000515360.5_1_5:177569546-177575030:+|nuORF;REV__nc|ENSG00000145916|Q96G75-2|RMND5B 53.57557251787612 0.037462444036765755 1 V{I|L}AHE 5 -1 50.151 0 0 5.7484 0 0 97.05058932942093 223.07248865299064 320.1230779824116 0 0 0 0 0 2.2059771852360797 0 1.3644555354810797 0 V{I|L}AHE 5.7484 - 348 + NaN NaN 276904 NaN 6802 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9254 46.489 NaN 720790 35 0 34366 0.261 + 34226 YPDRIMNTF 9 83 586.7738327790339 1171.5331126248677 2 587.2754516601562 MULTI HCD FTMS 0 0 0 9252 270970.15625 0.08595334542839615 -16 0.4574623107910156 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 166.76915356408847 5.584250141028017E-09 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 102.14 0 0 8.7185 8.7185 94.07 0 0 0 19.136517235504726 19.136517235504726 19.136517235504726 11.95046257204389 0 2.8169015600442577 1.5228787452803376 2.3695063820031512 0.8494850021680094 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 8.7185;7.6984;7.085;6.5298;6.2991;6.2253;5.7438;5.7404;5.5521;5.1209 +;-;+;-;-;-;-;-;-;- + 5863 + NaN NaN 200748 NaN 6803 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9255 46.493 NaN 356180 35 0 25353 0.261 + 26430 STIEYVIQR 9 72 554.8036271859343 1107.5927014386684 2 555.305419921875 MULTI HCD FTMS 0 0 0 9252 90388.2421875 0.4217559098236576 -6 0.177215576171875 3 Unmodified _STIEYVIQR_ ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion 103.41943736471063 0.004016698775839292 1 {[MG]|[TS]}{I|L}EYV{I|L}QR 9 0 + 89.804 0 0 8.108 8.108 91.6 0 0 0 0.8481484931183161 0.8481484931183161 0.8481484931183161 9.208187539523749 0 2.9291746928241125 0 0 0.28872548999643577 + + {[MG]|[TS]}{I|L}EYV{I|L}QR;{[MG]|[TS]}{I|L}EYV{I|L}[AG]R;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}QR;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}[AG]R;{[MG]|[TS]}[YE]{I|L}V{I|L}QR;{[MG]|[TS]}[YE]{I|L}V{I|L}[AG]R;KYR[TA]WQR;{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R{I|L}QR;KYR[TA]W[AG]R;{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R{I|L}[AG]R 8.108;7.2766;6.0265;5.1951;5.0326;4.2012;3.3652;3.2615;2.5289;2.4253 +;-;-;-;-;-;-;-;-;- + 527 + NaN NaN 147787.1 NaN 6804 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9256 46.496 NaN 239380 35 0 12281 0.261 + 5800 FPAVGMHSL 9 69 487.7421111813245 NaN 0 487.74176025390625 PEAK HCD FTMS 0 0 0 9252 41436.671875 0.1888878046695822 -6 0.177215576171875 4 Oxidation (M) _FPAVGM(Oxidation (M))HSL_ ENSG00000167778|ENST00000301463|SPRYD3 89.42679046578446 7.466790119135672E-05 1 PAV 3 6 29.693 0 0 3.0502 0 0 147.0699150048777 556.2199190729124 703.2898340777901 0 0 0 0 0 1.3494850021680094 0 0 0 + PAV 3.0502 + + 76 + NaN NaN 119743.7 NaN 6805 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9257 46.499 NaN 158330 35 0 30116 0.261 -1 0 43 416.2435305890866 1245.70876236746 3 416.24371337890625 MULTI HCD FTMS 0 0 0 9252 43655.1796875 0.07924879546819658 94 -2.333728790283203 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.1222 0 0 1080.6300708164817 0 1080.6300708164817 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1222 - 5 + NaN NaN 101160.6 NaN 6806 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9258 46.503 NaN 95693 35 0 15063 0.261 -1 LPDDPRQMTL 10 30 601.2976210883207 1200.5806892434414 2 601.2980346679688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 7.608950283845883 0.4350283211712914 1 {I|L}[DP]D 4 -1 16.427 0 0 1.3682 0 0 0 757.3668135805037 757.3668135805037 9.436974992327123 0 0 0 0 0.5 0 0 0 {I|L}[DP]D 1.3682 + + 4 + NaN NaN 93160.1 NaN 6807 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9259 46.506 NaN 158290 35 0 15531 0.263 + -1 FQLLCMTKLYL 11 41 482.5895211695768 NaN 0 482.58917236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _FQLLC(Carbamidomethyl (C))M(Oxidation (M))TKLYL_ REV__ENST00000438432.5_1_2:136756287-136764807:+|nuORF;REV__ENST00000594219.6_2_2:136759651-136764807:+|nuORF;REV__ENST00000597450.1_1_2:136757602-136764807:+|nuORF 2.2527281973983926 0.3357298023243824 1 WN 2 -1 7.9588 0 0 0.82632 0 0 131.78443677099114 528.2215670221311 660.0060037931223 0 0 0 0 0 0 0 0 0 WN 0.82632 - 4 + NaN NaN 113756.6 NaN 6808 2449 9252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9261 46.511 NaN 58285000 35 0 6838700 0.327 + 542 APEEHPVLL 9 105 502.7741653025147 1003.5337776718294 2 502.77447509765625 MULTI HCD FTMS 0 0 0 9260 72515344 0.6954542071734973 -6 0.17345046997070312 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 154.46347324262513 4.107785341423729E-06 1 [PA]EEHPV{I|L}{I|L} 9 0 + 86.296 0 0 8.5992 8.5992 90.532 0 0 0 6.679254904673485 6.679254904673485 6.679254904673485 6.679254904673485 0 2.1237125054200234 1.5228787452803376 1.341129063296272 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[EP]EAHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[EP]EHAPV{I|L}{I|L};[EP]AEH{I|L}VP{I|L};[PA]EEH{I|L}V{I|L}P;[EP]EHVPA{I|L}{I|L} 8.5992;7.9336;7.5265;7.2935;6.9177;6.5491;6.4221;6.2209;5.9488;5.8734 +;+;-;-;-;-;-;-;-;- + 3390 NaN NaN 893705.1 NaN 6809 2450 9260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9262 46.515 NaN 494730 35 0 57881 0.261 -1 ITCEPTQEL 9 56 545.7578989526138 1089.5012449720275 2 545.75830078125 MULTI HCD FTMS 0 0 0 9260 304041.4375 0.9710494438136122 -2 0.048610687255859375 2 Carbamidomethyl (C) _ITC(Carbamidomethyl (C))EPTQEL_ tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 41.8396318013385 0.056899836730939755 1 {[QN]|[E{I|L}]|[KN]}QCEVQE{I|L} 9 -1 + 74.541 0 0 6.8417 6.8417 89.482 0 0 0 14.948500216800937 16.478174818886373 14.948500216800937 9.208187539523749 0 1.305462187404089 1.0969100130080565 0 0.6694451763165201 {[QN]|[E{I|L}]|[KN]}QCEVQE{I|L};{[QN]|[E{I|L}]|[KN]}QCEV[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}[AG]CEVQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}CEVQE{I|L};{[QN]|[E{I|L}]|[KN]}[AG]CEV[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}GG[MD]VQE{I|L} 6.8417;5.9965;5.9965;5.8349;5.481;5.4697;5.1554;4.9897;4.6358;4.6358 -;-;-;-;-;-;-;-;-;- 585 NaN NaN 160320.2 NaN 6810 2450 9260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9263 46.519 NaN 75425 35 0 8338.8 0.261 + 23163 RFKCYPAL 8 44 499.2699279785156 NaN 0 499.2699279785156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RFKCYPAL_ REV__ENSG00000115827|ENST00000375255|DCAF17;REV__ENST00000468592.5_1_2:172300063-172325523:+|nuORF;REV__ENST00000480855.1_1_2:172299988-172306494:+|nuORF 8.593279151180031 0.38822285293237185 1 AP 2 -1 15.969 0 0 1.6025 0 0 131.09679863207845 694.3172547475923 825.4140533796708 0 0 0 0 0 0.5 0 0 0 AP 1.6025 - 3 + NaN NaN 106704.5 NaN 6811 2450 9260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9265 46.523 NaN 296090 35 0 24654 0.327 + 18194 MPDLPEKL 8 68 479.7494376495878 957.4843223659756 2 479.7491149902344 MULTI HCD FTMS 0 0 0 9264 209129.40625 0.6195948960603317 -1 0.0126190185546875 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 55.50274090549119 0.09370106398411177 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L} 8 0 + 45.525 0 0 4.7546 4.7546 80.969 0 0 0 0.14305410710488076 0.14305410710488076 0.14305410710488076 0.14305410710488076 0 1.9291746928241125 0 1.25 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[QN]|[E{I|L}]|[KN]}{[HG]|PP}{[{M(Oxidation (M))|F}D]|MM}K{I|L};[EP]{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P[K{I|L}]E 4.7546;4.7397;1.5855;1.5855;1.255 +;+;-;-;- + 156 NaN NaN 129161.8 NaN 6812 2451 9264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9266 46.528 NaN 352910 35 0 41857 0.261 + 1988 DASGPDPQL 9 61 450.20873652864367 898.4029201240874 2 450.20880126953125 MULTI HCD FTMS 0 0 0 9264 326783.28125 0.2801238559247073 -11 0.3048248291015625 2 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 86.33184430468982 0.004622086694044132 1 {[DA]|[EG]}SGPD[QP]{I|L} 9 0 + 82.858 0 0 9.2229 9.2229 97.013 0 0 0 4.018637558036673 4.018637558036673 4.018637558036673 28.26606256887672 0 2.579689690656103 1.5228787452803376 0.3494850021680094 0.8494850021680094 + + {[DA]|[EG]}SGPD[QP]{I|L};{[SA]|[TG]}DGPD[QP]{I|L} 9.2229;6.0766 +;- + 200 + NaN NaN 148528 NaN 6813 2451 9264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9267 46.531 NaN 1326100 35 0 259240 0.261 + 20558 PEEHPVLL 8 70 467.25563735465266 932.4967217761053 2 467.2552490234375 MULTI HCD FTMS 0 0 0 9264 62999.77734375 0.19454613413462948 -10 0.26513671875 3 Unmodified _PEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 89.42679046578446 0.023235607516423472 1 [EP]EHPV{I|L}{I|L} 8 0 + 81.776 0 0 8.7696 8.7696 96.116 0 0 0 14.604093769761874 38.94734048120206 14.604093769761874 23.935078169319297 0 1.7302046884880937 1 1.110924374808178 0 + + [EP]EHPV{I|L}{I|L};PEEHPV{I|L}{I|L};{[YC]|[HE]}[EP]PV{I|L}{I|L};[EP]EH[{I|L}V]P{I|L};[VP]{I|L}HEEP{I|L};[VP]{I|L}HEPE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEPV{I|L}{I|L};[{I|L}V]PHEEP{I|L};[{I|L}V]PHEPE{I|L};{[YC]|[HE]}[EP][{I|L}V]P{I|L} 8.7696;6.2028;5.6599;5.4211;5.3383;5.1815;4.9439;3.0895;2.9328;2.3114 +;+;-;-;-;-;-;-;-;- + 369 NaN NaN 279637.2 NaN 6814 2451 9264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9269 46.536 NaN 2856100 35 0 370160 0.327 + 24773 RYPDNLKHLYL 11 104 477.9297349146328 1430.7673753440984 3 478.26397705078125 MULTI HCD FTMS 0 0 0 9268 1032290.125 0.6355787266569736 1 -0.0092926025390625 1 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 59.49591170135616 0.042424245816579324 1 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 89.958 0 0 6.2874 6.2874 86.684 0 0 0 4.330310536180832 48.49560552535928 4.330310536180832 6.9897000433601875 0 2.5114393726401687 0 0.8252574989159953 1.0629529932484498 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RD]N{I|L}KH{I|L}Y{I|L};[DP][YR]N{I|L}KH{I|L}Y{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KH{I|L}{I|L}Y;[YR][DP]N{I|L}KHY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RD]GG{I|L}KH{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RD]N{I|L}KH{I|L}{I|L}Y;[DP][YR]GG{I|L}KH{I|L}Y{I|L};[DP][YR]N{I|L}KH{I|L}{I|L}Y 6.2874;5.7988;5.6758;5.6494;5.5546;5.4307;5.1608;5.0661;5.0378;4.943 +;-;-;-;-;-;-;-;-;- + 1838 NaN NaN 503922.5 NaN 6815 2452 9268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9270 46.54 NaN 581970 35 0 84608 0.261 + 35169 YVHVTEFF 8 79 521.2540472067153 NaN 0 521.253662109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YVHVTEFF_ REV__ENSG00000198797|ENST00000361539|BRINP2;REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF;REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2 14.581692164780916 0.38795613832665576 1 A 1 -1 15.797 0 0 1.5182 0 0 165.0798868415141 801.3533067301175 966.4331935716316 0 0 0 0 0 0.8807196863200843 0 0 0 A 1.5182 - 53 + NaN NaN 169455.4 NaN 6816 2452 9268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9272 46.545 NaN 2555600 35 0 285770 0.327 + 4963 FATHFLELC 9 118 540.7641826116744 NaN 0 540.7537231445312 PEAK HCD FTMS 0 0 0 9271 68350.390625 0.9556726957696148 -1 0.0092926025390625 1 Unmodified _FATHFLELC_ ENSG00000057468|ENST00000263187|MSH4 21.74664581756881 0.17567436591797916 1 S{I|L}E[HA]ET 7 7 32.316 0 0 2.9936 0 0 147.08340565127997 162.05611597232658 309.1395216236066 0 0 0 0 0 0.5 0 2.2302046884880937 0 S{I|L}E[HA]ET 2.9936 - 1646 + NaN NaN 489065.8 NaN 6817 2453 9271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9273 46.549 NaN 560340 35 0 157060 0.261 + 9168 HPISSEELL 9 54 512.7688461166421 1023.5231393000842 2 512.7683715820312 MULTI HCD FTMS 0 0 0 9271 405740.59375 0.5972766515813708 -8 0.17824554443359375 2 Unmodified _HPISSEELL_ ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921|ETS1 50.855029805455786 0.030374663808198754 1 E{I|L}{I|L} 3 6 38.5 0 0 3.7615 0 0 650.3012712876994 0 650.3012712876994 0 27.81357210935475 0 0 0 0.8807196863200843 0 0.3494850021680094 0 + E{I|L}{I|L} 3.7615 + + 76 NaN NaN 166244.5 NaN 6818 2453 9271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9274 46.553 NaN 680930 35 0 97665 0.261 + 572 APEENLLPC 9 90 521.7472119012973 1041.4798708693945 2 521.74755859375 MULTI HCD FTMS 0 0 0 9271 248278.03125 0.752941271241014 1 -0.012451171875 3 Carbamidomethyl (C) _APEENLLPC(Carbamidomethyl (C))_ MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant 58.678817012210395 0.019429721296335044 1 APEEH 5 5 40.904 0 0 3.9275 0 0 0 475.22443567447505 475.22443567447505 19.872891665851995 0 0 0 0 1 0 0.9802046884880937 0 APEEH 3.9275 - 388 + NaN NaN 187426.3 NaN 6819 2453 9271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9276 46.558 NaN 84802 35 0 16121 0.411 + 24099 RYALQMEQL 9 45 584.2953491210938 NaN 0 584.2953491210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 40.23920728925047 0.07750821844000592 1 QE{M(Oxidation (M))|F}Q{I|L}A 6 7 49.641 0 0 4.2553 0 0 131.09276153634397 316.1400545709594 447.2328161073034 0 0 0 0 0 1.274227503252014 0 0 0.4247425010840047 QE{M(Oxidation (M))|F}Q{I|L}A 4.2553 - 201 + NaN NaN 112179.1 NaN 6820 2454 9275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9278 46.565 NaN 541850 35 0 108990 0.411 + 25016 RYVRRLDFF 9 94 424.57175045416244 1270.6934219626874 3 424.9062805175781 MULTI HCD FTMS 0 0 0 9277 190736.921875 0.3631270320206716 24 -0.383392333984375 1 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 25.969 0 0 2.0437 0 0 958.5462714194624 0 958.5462714194624 0 7.385606273598313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0437 + + 38 + NaN NaN 243709.5 NaN 6821 2455 9277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9280 46.572 NaN 292160 35 0 57040 0.411 + 27591 TAFPGTDKL 9 75 475.25313682313816 948.4917207130763 2 475.2530517578125 MULTI HCD FTMS 0 0 0 9279 290141.59375 0.7747222520064735 -8 0.11017990112304688 1 Unmodified _TAFPGTDKL_ ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503 31.26834338654808 0.10542797264966089 1 [TA]{M(Oxidation (M))|F}P 4 5 40.177 0 0 4.2359 0 0 0 529.2627047174436 529.2627047174436 26.197887582883936 0 0 0 0 1 1.6989700043360187 0 0 + [TA]{M(Oxidation (M))|F}P 4.2359 + + 162 + NaN NaN 172469.6 NaN 6822 2456 9279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9282 46.579 NaN 1532400 35 0 254570 0.327 + 18387 MPQAMSFVM 9 92 529.2298199023229 1056.4450868714457 2 529.2299194335938 MULTI HCD FTMS 0 0 0 9281 651240 0.7450938889921771 -7 0.06880950927734375 1 Oxidation (M) _MPQAMSFVM(Oxidation (M))_ REV__ENSG00000135912|ENST00000392102|TTLL4;REV__TTLL4|p.E531Vfs*13|1|0.09|ENSG00000135912|chr2:218740161-218740162|-/TCACAGTT|frameshift_variant 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}N{[RE]|[WV]}V{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 + 35.988 0 0 3.4065 3.4065 81.447 0 0 0 18.759308061610778 12.303564446776733 12.303564446776733 4.648167490521168 0 0.7059771852360797 0 0.28872548999643577 0 {M(Oxidation (M))|F}N{[RE]|[WV]}V{M(Oxidation (M))|F}V{M(Oxidation (M))|F};S{I|L}[WC(Carbamidomethyl (C))]V{M(Oxidation (M))|F}V{M(Oxidation (M))|F};C[W{I|L}][SG]V{M(Oxidation (M))|F}V{M(Oxidation (M))|F};C{[SA]|[TG]}{[RE]|[WV]}V{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{M(Oxidation (M))|F}GG{[RE]|[WV]}V{M(Oxidation (M))|F}V{M(Oxidation (M))|F};C[W{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YT][RN]{[QD]|[EN]|[WG]|[KD]|[RS]}N{M(Oxidation (M))|F};[YT][YG][RH]N{M(Oxidation (M))|F} 3.4065;2.9665;2.7873;2.7714;2.5298;2.459;2.2247;0.63151;0.59218;0.53729 -;-;-;-;-;-;-;-;-;- 1010 + NaN NaN 327921.8 NaN 6823 2457 9281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9283 46.584 NaN 563410 35 0 99893 0.261 + 1083 AYIERMNYI 9 78 594.7896900179466 1187.564827102693 2 594.7897338867188 MULTI HCD FTMS 0 0 0 9281 288682.8125 0.6822097515188977 1 -0.012485504150390625 2 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 70.33199760932243 0.0089807860198535 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 94.619 0 0 7.9675 7.9675 91.36 0 0 0 20.784634594678266 16.478174818886373 16.478174818886373 9.208187539523749 0 2.274227503252014 2 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[QS]|[NT]}{[DS]|[MA]|[CV]|TT}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][WP]NY{I|L} 7.9675;7.1921;7.1921;7.0246;5.7422;5.5746;5.4049;5.3871;5.1116;4.7506 +;-;-;-;-;-;-;-;-;- + 473 NaN NaN 174012.3 NaN 6824 2457 9281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9284 46.587 NaN 2080000 35 0 244800 0.264 + 9862 IAAVYEHA 8 103 437.22698293816285 NaN 0 437.227294921875 PEAK HCD FTMS 0 0 0 9281 123404.0234375 0.48047398902445715 -4 0.034297943115234375 3 Unmodified _IAAVYEHA_ ENSG00000112303|ENST00000326499|VNN2;ENST00000448644.2_1_6:133055390-133055831:-|nuORF;ENST00000526192.1_1_6:133074642-133078971:-|nuORF;nc|ENSG00000112303|O95498-2|VNN2;nc|ENSG00000112303|O95498-3|VNN2;nc|ENSG00000112303|O95498-4|VNN2;nc|ENSG00000112303|O95498-5|VNN2 46.92087301778293 0.25711335765761706 1 {I|L}AHE 4 5 45.508 0 0 5.2162 0 0 196.1214820471227 223.07241235904533 419.19389440616806 0 0 0 0 0 2.2302046884880937 0 0.9049471895720985 0 {I|L}AHE 5.2162 - 390 + NaN NaN 402804.5 NaN 6825 2457 9281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9289 46.611 NaN 4260900 35 0 217730 0.327 + 34227 YPDRIMNTF 9 123 586.7738327790339 1171.5331126248677 2 586.7742919921875 MULTI HCD FTMS 0 0 0 9288 3962367 0.7726754461143894 -4 0.03177642822265625 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 192.32093250933514 2.3286398909669E-13 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 107.22 0 0 9.1522 9.1522 95.435 0 0 0 55.522636216576466 12.98332479720628 12.98332479720628 15.233171406382809 0 2.9291746928241125 1.5228787452803376 1.6725286100849517 1.4863467363607779 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F} 9.1522;7.8519;7.7948;7.1254;7.0659;6.6441;6.4949;6.4677;6.3394;6.2927 +;+;-;-;-;-;-;-;-;- + 21359 + NaN NaN 743121.4 NaN 6826 2461 9288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9290 46.615 NaN 1053200 35 0 164440 0.261 + 9169 HPISSEELL 9 75 512.7688461166421 1023.5231393000842 2 513.2708740234375 MULTI HCD FTMS 0 0 0 9288 404452.375 0.8248224310310468 5 -0.07271575927734375 2 Unmodified _HPISSEELL_ ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921|ETS1 42.09456458481378 0.05572955244001856 1 E{I|L}{I|L} 3 6 36.972 0 0 3.6123 0 0 650.3016014122926 0 650.3016014122926 0 21.57858457228773 0 0 0 0.7887254899964358 0 0.28872548999643577 0 + E{I|L}{I|L} 3.6123 + + 272 NaN NaN 246344.2 NaN 6827 2461 9288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9291 46.619 NaN 758940 35 0 125520 0.261 + 11841 KESTLHLVL 9 79 520.3108109114573 1038.6070688897146 2 520.3111572265625 MULTI HCD FTMS 0 0 0 9288 276390.1875 0.5577102899650391 -1 0.006259918212890625 3 Unmodified _KESTLHLVL_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF 78.7280429016045 0.006263961847259105 1 H{I|L}V{I|L} 4 5 39.68 0 0 3.8205 0 0 558.3008675991904 0 558.3008675991904 0 19.58699520843611 0 0 0 0.7742275032520141 0 0 0 + H{I|L}V{I|L} 3.8205 + + 119 NaN NaN 194886.7 NaN 6828 2461 9288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9292 46.622 NaN 388740 35 0 24741 0.261 + 26431 STIEYVIQR 9 79 554.8036271859343 1107.5927014386684 2 554.80419921875 MULTI HCD FTMS 0 0 0 9288 213687.6875 0.4113195423710187 7 -0.09922409057617188 4 Unmodified _STIEYVIQR_ ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion 96.36657018975838 0.004359138328518304 1 {[MG]|[TS]}{I|L}EYV{I|L}QR 9 0 + 81.718 0 0 7.378 7.378 90.467 0 0 0 7.147642715192504 11.660006443871893 7.147642715192504 9.208187539523749 0 2.4361818737241734 0 0 0.2742275032520141 + + {[MG]|[TS]}{I|L}EYV{I|L}QR;{[MG]|[TS]}{I|L}EYV{I|L}[AG]R;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}QR;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}[AG]R;{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R{I|L}QR;{[MG]|[TS]}{I|L}{I|L}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}QR;{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R{I|L}[AG]R 7.378;6.5466;5.4058;4.5744;2.9691;2.3771;2.1328 +;-;-;-;-;-;- + 677 + NaN NaN 165530.9 NaN 6829 2461 9288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9293 46.625 NaN 695240 35 0 122280 0.261 + 24726 RYLVISEKL 9 89 560.8397750929485 1119.6649972526968 2 561.3414916992188 MULTI HCD FTMS 0 0 0 9288 219997.5 0.17284679550184673 -10 0.0879669189453125 5 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 75.5705956163825 0.007285660612518157 1 {I|L}[YR]V{I|L}SEK{I|L} 9 2 + 67.501 0 0 6.0287 6.0287 83.487 0 0 0 46.03031650958563 0.6110020041029571 0.6110020041029571 0.8800039994148534 0 2.7302046884880937 0 1.2302046884880937 0.3494850021680094 {I|L}[YR]V{I|L}SEK{I|L};{I|L}K{M(Oxidation (M))|F}[KQ]SEK{I|L};{I|L}K{M(Oxidation (M))|F}S[KQ]EK{I|L};R[Y{I|L}]V{I|L}SEK{I|L};R[YV]{I|L}{I|L}SEK{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{I|L}[KQ]{M(Oxidation (M))|F}K{I|L};{[ES]|[DT]|[{I|L}C]}K{I|L}[KQ]{M(Oxidation (M))|F}K{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}S[KQ]{M(Oxidation (M))|F}K{I|L} 6.0287;5.9501;5.5708;4.7971;4.7857;4.3057;4.1713;3.5002 -;-;-;+;-;-;-;- + 542 + NaN NaN 187975.4 NaN 6830 2461 9288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9295 46.63 NaN 1737800 35 0 168260 0.326 + 29221 TYLEKAIKI 9 96 539.8289784923486 1077.643404051497 2 539.8292236328125 MULTI HCD FTMS 0 0 0 9294 1248939.375 0.7893704591416965 1 -0.0093231201171875 1 Unmodified _TYLEKAIKI_ ENSG00000187555|ENST00000344836|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7 110.79276546118962 0.0028129822227594098 1 TY{I|L}EKA{I|L}K{I|L} 9 0 + 99.765 0 0 9.2577 9.2577 90.175 0 0 0 3.8772686722014527 3.8772686722014527 3.8772686722014527 3.8772686722014527 0 2.885151878060192 2 0.8807196863200843 0.3054621874040891 + + TY{I|L}EKA{I|L}K{I|L};[YT]{I|L}EKA{I|L}K{I|L};[YT]{I|L}EKA{I|L}{I|L}K;[YT]E{I|L}KA{I|L}K{I|L};[YT]{I|L}T[VG]A{I|L}K{I|L};TY{I|L}EK[K{I|L}]A{I|L};{I|L}TYEKA{I|L}K{I|L};[YT]E{I|L}KA{I|L}{I|L}K;[YT]{I|L}E[{I|L}A]KK{I|L};[YT]{I|L}T[VG]A{I|L}{I|L}K 9.2577;8.8979;7.9899;7.2923;7.0942;6.4868;6.3999;6.3844;6.3247;6.1862 +;+;-;-;-;-;-;-;-;- + 1416 + NaN NaN 352492.9 NaN 6831 2462 9294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9296 46.634 NaN 121340 35 0 11573 0.261 -1 GFEGQNCE 8 47 470.67711254105706 NaN 0 471.07818603515625 PEAK HCD FTMS 0 0 0 9294 34991.5078125 0.7193410457485059 -2 0.02498626708984375 2 Carbamidomethyl (C) _GFEGQNC(Carbamidomethyl (C))E_ ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant;NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant 0.7936320650641473 0.38822285293237185 1 {I|L} 1 -1 2.4743 0 0 0.2634 0 0 582.0768375315298 241.1555575006469 823.2323950321767 0 0 0 0 0 0 0 0 0 {I|L} 0.2634 - 1 + NaN NaN 104381.1 NaN 6832 2462 9294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9298 46.639 NaN 70763000 35 0 8827100 0.327 + 543 APEEHPVLL 9 105 502.7741653025147 1003.5337776718294 2 502.774658203125 MULTI HCD FTMS 0 0 0 9297 80303408 0.7701451839485154 7 -0.10107803344726562 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 154.46347324262513 4.107785341423729E-06 1 [PA]EEHPV{I|L}{I|L} 9 0 + 87.5 0 0 8.7192 8.7192 89.005 0 0 0 2.951140161145318 2.951140161145318 2.951140161145318 2.951140161145318 0 2.3737125054200234 1.3010299956639813 1.2951140161145327 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};{[CP]|[EA]}PEHPV{I|L}{I|L};EEPAHPV{I|L}{I|L};[EP]AEH{I|L}VP{I|L};[EP]EAH{I|L}VP{I|L} 8.7192;8.4252;7.8009;7.2138;6.9119;6.8214;6.378;5.9252;5.903;5.316 +;+;-;-;-;-;-;-;-;- + 3468 NaN NaN 713535.8 NaN 6833 2463 9297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9299 46.644 NaN 2253400 35 0 200550 0.261 + 21813 QAQKDELIL 9 101 529.2979986396278 1056.5814443460556 2 529.298095703125 MULTI HCD FTMS 0 0 0 9297 991917.1875 0.30257505010101804 -6 0.059825897216796875 2 Unmodified _QAQKDELIL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF 99.75527289724121 0.004270341300239591 1 ET[C(Carbamidomethyl (C))K]{I|L}{I|L}{I|L} 7 5 41.986 0 0 3.9738 0 0 181.08482558418126 0 181.08482558418126 0 17.66614170624253 0 0 0 0.5 0 1.110924374808178 1.1307196863200843 ET[C(Carbamidomethyl (C))K]{I|L}{I|L}{I|L} 3.9738 - 1226 NaN NaN 424540.4 NaN 6834 2463 9297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9300 46.647 NaN 390870 35 0 51386 0.261 + 18421 MPTQEVQEL 9 61 545.7578989526138 1089.5012449720275 2 545.7583618164062 MULTI HCD FTMS 0 0 0 9297 197085.671875 0.6294534509226257 11 -0.19469833374023438 3 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 55.50274090549119 0.023872834264864425 1 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L} 9 4 + 57.4 0 0 5.2684 5.2684 82.393 0 0 0 6.7216751192405155 3.0938593453571883 3.0938593453571883 1.249387366082999 0 1.3807196863200843 0 0.5994850021680094 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}GG[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L} 5.2684;5.1538;5.0648;4.6515;4.5368;4.4233;4.4233;4.3086;4.3086;4.2196 -;-;-;-;-;-;-;-;-;- 626 NaN NaN 159403.2 NaN 6835 2463 9297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9301 46.65 NaN 253320 35 0 67049 0.261 + 10483 IPDSALATAL 10 50 486.2738906743877 970.5332284155754 2 486.2739562988281 MULTI HCD FTMS 0 0 0 9297 135596.015625 0.5105086070265942 -2 0.028049468994140625 4 Unmodified _IPDSALATAL_ REV__ENSG00000067182|ENST00000162749|TNFRSF1A;REV__ENST00000536717.5_1_12:6438480-6440154:-|nuORF;REV__nc|ENSG00000067182|P19438-2|TNFRSF1A;REV__nc|ENSG00000067182|P19438-3|TNFRSF1A;REV__TNFRSF1A|p.N365Tfs*14|1|0.38|ENSG00000067182|chr12:6329586-6329586|T/-|frameshift_variant 36.12702656103203 0.1790159924230938 1 {I|L}PD 3 -1 50.049 0 0 5.1569 0 0 0 642.3475435846311 642.3475435846311 22.87733420443658 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 {I|L}PD 5.1569 + + 85 + NaN NaN 122038.9 NaN 6836 2463 9297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9302 46.654 NaN 508570 35 0 27007 0.261 + 1333 AYPHNLMTF 9 73 555.2577602370291 1108.500967540858 2 555.2577514648438 MULTI HCD FTMS 0 0 0 9297 111049.734375 0.0677009715463201 -11 0.10341644287109375 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 78.14939416004806 0.006451203201226903 1 {I|L}EYV{I|L}QR 7 8 36.419 0 0 3.2854 0 0 188.9875688054713 0 188.9875688054713 0 -4.246199743006045 -4.246199743006045 0 0 0 0 0 0 {I|L}EYV{I|L}QR 3.2854 - 625 + NaN NaN 155323.8 NaN 6837 2463 9297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9304 46.658 NaN 1010600 35 0 127120 0.327 + 1989 DASGPDPQL 9 78 450.20873652864367 898.4029201240874 2 450.208740234375 MULTI HCD FTMS 0 0 0 9303 1056073.875 0.9052834186459695 2 -0.025577545166015625 1 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 199.7497906028788 1.768571556262374E-17 1 {[DA]|[EG]}SGPDPQ{I|L} 9 0 + 111.94 0 0 12.46 12.46 95.075 0 0 0 0.044321917401077826 0.044321917401077826 0.044321917401077826 9.252509456924827 0 3.1549471895720984 1.6989700043360187 0.6549471895720985 1.9049471895720984 + + {[DA]|[EG]}SGPDPQ{I|L};{[DA]|[EG]}SGPDP[AG]{I|L};{[SA]|[TG]}DGPDPQ{I|L};{[SA]|[TG]}DGPDP[AG]{I|L};{[DA]|[EG]}SGP[PG]{[DA]|[EG]}{I|L};{[DA]|[EG]}SGP[PG]{I|L}{[DA]|[EG]};[DP]GSADPQ{I|L};[DP]{[QS]|[NT]}DPQ{I|L};{[SA]|[TG]}DGP[PG]{[DA]|[EG]}{I|L};[DP]GSADP[AG]{I|L} 12.46;11.43;9.367;8.342;7.7521;6.2754;5.5059;4.816;4.6641;4.481 +;-;-;-;-;-;-;-;-;- + 681 + NaN NaN 237126.5 NaN 6838 2464 9303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9306 46.665 NaN 1487000 35 0 194240 0.327 + 24774 RYPDNLKHLYL 11 93 477.9297349146328 1430.7673753440984 3 477.9294738769531 MULTI HCD FTMS 0 0 0 9305 801250.8125 0.4377095250549185 13 -0.2602691650390625 1 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 41.566510922350716 0.12686123777427089 1 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 73.804 0 0 5.1584 5.1584 85.655 0 0 0 6.504928410806869 45.899579725537365 6.504928410806869 9.128498242810991 0 1.7302046884880937 0 0.5 0.7302046884880937 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KHY{I|L}{I|L};[Y{I|L}][RN][DP]KH{I|L}Y{I|L};[YR][DP]GG{I|L}KHY{I|L}{I|L};{[TV]|[{I|L}S]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]H{I|L}Y{I|L};[Y{I|L}][RN][DP]KHY{I|L}{I|L};[YR]{[QV]|[N{I|L}]|[RA]|[KV]}[DP]KH{I|L}Y{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YR][DP]KH{I|L}Y{I|L};{[TV]|[{I|L}S]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]HY{I|L}{I|L} 5.1584;4.5204;4.3324;4.142;3.6944;3.5062;3.316;3.1649;2.7084;2.6802 +;-;-;-;-;-;-;-;-;- + 753 NaN NaN 306274.2 NaN 6839 2465 9305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9307 46.669 NaN 189810 35 0 25243 0.261 -1 LPDDPRQMTL 10 44 601.2976210883207 1200.5806892434414 2 601.2982788085938 MULTI HCD FTMS 0 0 0 9305 238544.3125 1 0 0 2 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 21.590151480376914 0.30916502439568466 1 {I|L}PDD 4 -1 41.428 0 0 3.4507 0 0 0 757.3669622181931 757.3669622181931 30.001225267834002 0 0 0 0 1.25 0 0 0 {I|L}PDD 3.4507 + + 50 + NaN NaN 103734.4 NaN 6840 2465 9305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9308 46.673 NaN 138160 35 0 22414 0.261 + 19604 NTPAFFAER 9 38 526.7617057412994 NaN 0 526.7615966796875 PEAK HCD FTMS 0 0 0 9305 40882.37109375 0.4085592645697687 1 -0.01877593994140625 3 Unmodified _NTPAFFAER_ ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11 10.799506525563784 0.2429139407627568 1 PA{M(Oxidation (M))|F} 3 6 19.693 0 0 1.8728 0 0 215.090822589359 518.2370089166624 733.3278315060213 0 0 0 0 0 0.5 0 0 0 + PA{M(Oxidation (M))|F} 1.8728 + + 21 + NaN NaN 107556.6 NaN 6841 2465 9305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9309 46.676 NaN 1358400 35 0 128010 0.262 + -1 PGIAAMWI 8 94 437.7287787101796 NaN 0 437.72894287109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _PGIAAM(Oxidation (M))WI_ REV__ENSG00000162885|ENST00000366600|B3GALNT2 17.086550045450526 0.386433553673079 1 V{I|L}AHE 5 -1 28.415 0 0 3.2532 0 0 98.05790853645563 223.07224451236564 321.1301530488213 0 0 0 0 0 0.2742275032520141 0 0.850576203518622 0 V{I|L}AHE 3.2532 - 231 + NaN NaN 300807 NaN 6842 2465 9305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9310 46.679 NaN 76502 35 0 5897.7 0.261 + 13119 KYLGQLHYL 9 37 567.818603515625 NaN 0 567.818603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KYLGQLHYL_ ENSG00000076201|ENST00000265562|PTPN23 14.838274106304384 0.2220448417561729 1 Q 1 8 5.4846 0 0 0.48381 0 0 131.0946802869043 871.4310921863864 1002.5257724732908 0 0 0 0 0 0 0 0 0 + Q 0.48381 + + 7 + NaN NaN 100346.5 NaN 6843 2465 9305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9312 46.684 NaN 601170 35 0 58463 0.411 + 30627 VPDHQDIAF 9 110 521.2540472067153 NaN 0 521.2537231445312 PEAK HCD FTMS 0 0 0 9311 42072.75 0.22554563175042838 1 -0.007427215576171875 1 Unmodified _VPDHQDIAF_ ENSG00000143641|ENST00000366672|GALNT2 15.248480904072842 0.21929144555811228 1 V{I|L}HN 4 7 21.102 0 0 2.0281 0 0 131.97630319638046 442.23020349674067 574.2065066931211 0 0 0 0 0 0 0 0 0.3054621874040891 V{I|L}HN 2.0281 - 189 + NaN NaN 265435.9 NaN 6844 2466 9311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9314 46.691 NaN 452290 35 0 107650 0.327 + 27592 TAFPGTDKL 9 60 475.25313682313816 948.4917207130763 2 475.25286865234375 MULTI HCD FTMS 0 0 0 9313 274381.46875 0.7326403175478656 3 -0.048984527587890625 1 Unmodified _TAFPGTDKL_ ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503 41.95555342248728 0.056367691549927025 1 [TA]{M(Oxidation (M))|F}P 4 5 41.682 0 0 4.3946 0 0 0 529.2625826471311 529.2625826471311 20.268024924119672 0 0 0 0 1 1.6989700043360187 0 0 + [TA]{M(Oxidation (M))|F}P 4.3946 + + 49 + NaN NaN 150931.3 NaN 6845 2467 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9315 46.696 NaN 438130 35 0 86732 0.261 + 5232 FFDLRRVYR 9 64 424.57175045416244 1270.6934219626874 3 424.9061584472656 MULTI HCD FTMS 0 0 0 9313 183356.921875 0.34907690753523596 36 -0.9632225036621094 2 Unmodified _FFDLRRVYR_ REV__ENSG00000133275|ENST00000255641|CSNK1G2;REV__ENSG00000151292|ENST00000696905|CSNK1G3;REV__ENSG00000169118|ENST00000303052|CSNK1G1;REV__nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;REV__nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;REV__nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;REV__nc|ENSG00000151292|Q9Y6M4|CSNK1G3;REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 7.101721422024254 0.29718071671418667 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0437 0 0 958.5467321279056 0 958.5467321279056 0 7.385606273598313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0437 + + 8 + NaN NaN 153777.9 NaN 6846 2467 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9316 46.699 NaN 156800 35 0 12496 0.261 -1 PMDQAIRL 8 65 480.2512148172677 NaN 0 480.2509765625 PEAK HCD FTMS 0 0 0 9313 28067.650390625 0.11934959133255743 10 -0.19455337524414062 3 Oxidation (M) _PM(Oxidation (M))DQAIRL_ ENSG00000103494|ENST00000647211|RPGRIP1L;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L 10.183394434864962 0.38822285293237185 1 D{I|L} 2 -1 7.9588 0 0 0.83035 0 0 245.09122250387287 482.26112331404676 727.3523458179196 0 0 0 0 0 0 0 0 0 D{I|L} 0.83035 - 19 + NaN NaN 107191.4 NaN 6847 2467 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9317 46.702 NaN 63118 35 0 9393.5 0.261 -1 RYALQMEQL 9 30 584.2953491210938 NaN 0 584.2953491210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 23.789781309258295 0.16196040133829917 1 QE{M(Oxidation (M))|F}Q{I|L} 5 -1 33.443 0 0 2.8668 0 0 131.09088679954795 387.18036829166255 518.2712550912105 0 0 0 0 0 0.8494850021680094 0 0 0 QE{M(Oxidation (M))|F}Q{I|L} 2.8668 - 34 + NaN NaN 91923 NaN 6848 2467 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9318 46.706 NaN 481340 35 0 46738 0.261 -1 LCTQISSSF 9 75 521.7472119012973 1041.4798708693945 2 521.7463989257812 MULTI HCD FTMS 0 0 0 9313 98697.1875 0.2993143833549015 15 -0.3557624816894531 5 Carbamidomethyl (C) _LC(Carbamidomethyl (C))TQISSSF_ ENSG00000105245|ENST00000252891|NUMBL 10.073929032068715 0.27331982688540024 1 A{M(Oxidation (M))|F} 2 -1 18.583 0 0 1.7843 0 0 805.3639326143149 0 805.3639326143149 0 0.6246936830414995 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.7843 - 60 + NaN NaN 162687.1 NaN 6849 2467 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9320 46.71 NaN 149860 35 0 11762 0.411 + 33391 YGNTLVEFR 9 68 549.7824142030115 1097.550275472823 2 549.7830810546875 MULTI HCD FTMS 0 0 0 9319 81745.8671875 0.5848294915627485 4 -0.075103759765625 1 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 34.40172386719151 0.0910440009062557 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 44.521 0 0 4.0564 0 0 563.3068714826187 0 563.3068714826187 0 27.100234591511093 0 0 0 1.4247425010840047 0 0.805462187404089 0 VTN{[DS]|[MA]|[CV]|TT} 4.0564 - 62 NaN NaN 144957.7 NaN 6850 2468 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9322 46.718 NaN 202680 35 0 22157 0.327 + 18186 MPDLENRVL 9 54 551.7817484444461 1101.548943955692 2 551.7817993164062 MULTI HCD FTMS 0 0 0 9321 136694.484375 0.8708794118619103 -1 0.007442474365234375 1 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 57.24910588100465 0.021429789259086996 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}ENRV{I|L} 9 0 + 54.134 0 0 4.9143 4.9143 91.061 0 0 0 1.024459091530403 47.14387173178174 1.024459091530403 54.13357177514193 0 2.274227503252014 0 0.8252574989159953 0.3807196863200844 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}ENRV{I|L} 4.9143 + + 75 NaN NaN 110827.6 NaN 6851 2469 9321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9323 46.722 NaN 192880 35 0 37172 0.263 + 12069 KKAQSGGR 8 61 416.2436670485999 NaN 0 416.24359130859375 PEAK HCD FTMS 0 0 0 9321 61893.8984375 0.4594874914887373 9 -0.20754241943359375 2 Unmodified _KKAQSGGR_ ENST00000561606.1_1_5:10353444-10353579:-|nuORF;nc|ENSG00000259802|P0DW81|MARCHF6-DT 4.75600775471527 0.38822285293237185 1 C 1 8 3.0989 0 0 0.37315 0 0 327.22425929075604 397.2064415188061 724.4307008095622 0 0 0 0 0 0 0 0 0 C 0.37315 - 10 + NaN NaN 117249.4 NaN 6852 2469 9321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9324 46.726 NaN 185040 35 0 10027 0.261 -1 KMPKFKMPSF 10 66 419.5556140351042 1255.6450127055127 3 419.555419921875 MULTI HCD FTMS 0 0 0 9321 85816.296875 0.6878629374756247 3 -0.06766128540039062 3 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 12.174745833636585 0.39723355204102767 1 G{M(Oxidation (M))|F} 2 -1 24.776 0 0 1.9732 0 0 1033.5451114377377 0 1033.5451114377377 0 9.291746928241125 0 0 0 0.3807196863200844 0 0 0 G{M(Oxidation (M))|F} 1.9732 - 45 + NaN NaN 105468.4 NaN 6853 2469 9321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9325 46.729 NaN 219420 35 0 28634 0.261 -1 MPDLPEKL 8 53 479.7494376495878 957.4843223659756 2 479.74896240234375 MULTI HCD FTMS 0 0 0 9321 154871.96875 0.45884451689976136 17 -0.4388542175292969 4 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 39.94969957227396 0.23157582791120707 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L} 8 -1 + 31.78 0 0 3.3191 3.3191 88.153 0 0 0 6.061603143133496 6.718356431693309 6.061603143133496 31.78002510706193 0 1.5994850021680094 0 0.8494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L} 3.3191 + + 87 NaN NaN 115851 NaN 6854 2469 9321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9326 46.732 NaN 233610 35 0 29850 0.261 + -1 MFTRFNEEI 9 49 601.7791386629317 1201.5437243926633 2 602.2802124023438 MULTI HCD FTMS 0 0 0 9321 93832.921875 0.6450780483052286 -12 0.1384429931640625 5 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 8.155526934196011 0.2891920862272901 1 NVE{I|L} 4 -1 32.735 0 0 2.7244 0 0 728.2928944318375 0 728.2928944318375 0 24.151603310239906 0 0 0 0 0 0 0.3807196863200844 NVE{I|L} 2.7244 - 136 NaN NaN 116430 NaN 6855 2469 9321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9327 46.736 NaN 124910 35 0 16292 0.261 + 25320 SCLTAILCIF 10 50 542.2827864770875 1082.5510200209749 2 542.2826538085938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SCLTAILCIF_ SLC25A33|p.F91Lfs*55|1|0.26|ENSG00000171612|chr1:9567316-9567316|T/-|frameshift_variant 10.073929032068715 0.4168838835836452 1 {I|L}{M(Oxidation (M))|F} 2 8 30.969 0 0 2.8608 0 0 804.3878558137468 0 804.3878558137468 0 25.48455006504028 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.8608 + + 21 + NaN NaN 104455.2 NaN 6856 2469 9321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9329 46.74 NaN 134780 35 0 20943 0.327 + 13097 KYLEMIYSM 9 40 605.2799112405139 1208.5452695478277 2 605.2807006835938 MULTI HCD FTMS 0 0 0 9328 74056.2421875 0.7129894488201058 1 -0.0094451904296875 1 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 57.24910588100465 0.021429789259086996 1 [YK]{I|L}E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 9 0 + 69.759 0 0 5.7722 5.7722 92.91 0 0 0 62.3122157770505 10.51415913489059 10.51415913489059 69.75949072601743 0 2.504432191740108 0 1.1861818737241734 0 + + [YK]{I|L}E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 5.7722 + + 62 + NaN NaN 107280.8 NaN 6857 2470 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9330 46.745 NaN 509500 35 0 95353 0.263 + 20559 PEEHPVLL 8 51 467.25563735465266 932.4967217761053 2 467.2559509277344 MULTI HCD FTMS 0 0 0 9328 63354.7421875 0.19564228147065044 9 -0.20801162719726562 2 Unmodified _PEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 60.38955033654506 0.06344887527228933 1 [EP]EH[VP]{I|L}{I|L} 8 0 + 60.495 0 0 6.4874 6.4874 91.026 0 0 0 14.675390846596486 14.675390846596486 14.675390846596486 14.675390846596486 0 1.3807196863200843 1.3010299956639813 0.7302046884880937 0 + + [EP]EH[VP]{I|L}{I|L};PEEH[VP]{I|L}{I|L};[VP]{I|L}HE[EP]{I|L};{[YC]|[HE]}[EP][VP]{I|L}{I|L} 6.4874;4.9136;4.0902;3.4527 +;+;-;- + 67 NaN NaN 163484.9 NaN 6858 2470 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9332 46.75 NaN 3838200 35 0 186680 0.327 + 34228 YPDRIMNTF 9 133 586.7738327790339 1171.5331126248677 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9331 3294020.75 0.6423455859884523 6 -0.1361236572265625 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 220.09862028101273 6.762755077262548E-24 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 110.84 0 0 9.4612 9.4612 95.673 0 0 0 52.575621493546265 13.467874862246532 13.467874862246532 15.005084446084766 0 2.9674165578762484 1.3979400086720375 2.238540217437654 1.1593793813122064 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}TC(Carbamidomethyl (C))T{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};YPE[RV]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F} 9.4612;8.1804;7.8428;7.1395;7.0568;6.7725;6.722;6.5156;6.3709;6.3535 +;-;+;-;-;-;-;-;-;- + 23886 + NaN NaN 664238.5 NaN 6859 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9333 46.754 NaN 2228600 35 0 465180 0.261 + 24727 RYLVISEKL 9 102 560.8397750929485 1119.6649972526968 2 560.8399047851562 MULTI HCD FTMS 0 0 0 9331 1874440.125 0.9663796005675245 3 -0.08417510986328125 2 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 124.953037156858 0.0009110518730163033 1 [YR]{I|L}V{I|L}SEK{I|L} 9 0 + 80.913 0 0 7.2265 7.2265 87.655 0 0 0 4.99491555391522 4.99491555391522 4.99491555391522 4.99491555391522 0 2.4049471895720984 0 1.1747425010840047 0.3054621874040891 + + [YR]{I|L}V{I|L}SEK{I|L};RY{I|L}V{I|L}SEK{I|L};RYV{I|L}{I|L}SEK{I|L};{I|L}[YR]V{I|L}SEK{I|L};[YR]{I|L}V{I|L}ST[VG]{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]SEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[KQ]EK{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{I|L}[KQ]{M(Oxidation (M))|F}K{I|L};[YR]{I|L}V{I|L}ST{I|L}[VG];{[ES]|[DT]|[{I|L}C]}K{I|L}[KQ]{M(Oxidation (M))|F}K{I|L} 7.2265;6.7804;6.5584;6.3613;5.1521;4.7534;4.6862;4.5978;4.3239;4.2074 +;+;-;-;-;-;-;-;-;- + 1673 NaN NaN 428252.7 NaN 6860 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9334 46.758 NaN 924620 35 0 88704 0.261 + 29222 TYLEKAIKI 9 82 539.8289784923486 1077.643404051497 2 539.8289184570312 MULTI HCD FTMS 0 0 0 9331 610543.625 0.385883503426486 10 -0.26105499267578125 3 Unmodified _TYLEKAIKI_ ENSG00000187555|ENST00000344836|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7 100.7086487251713 0.004245359191255521 1 TY{I|L}EKA{I|L}K{I|L} 9 0 + 98.794 0 0 9.1676 9.1676 91.387 0 0 0 6.968552451348003 6.968552451348003 6.968552451348003 6.968552451348003 0 2.853917193908117 2 0.8807196863200843 0.23965182871044374 + + TY{I|L}EKA{I|L}K{I|L};[YT]{I|L}EKA{I|L}K{I|L};[YT]{I|L}T[VG]A{I|L}K{I|L};[YT]{I|L}E[{I|L}A]KK{I|L};{I|L}[YT]EKA{I|L}K{I|L};{[QN]|[E{I|L}]|[KN]}[YT]KA{I|L}K{I|L};[K{I|L}]AE[YT]{I|L}K{I|L};[K{I|L}]AKE{I|L}[YT]{I|L};[K{I|L}]AEK{I|L}[YT]{I|L};{[QN]|[E{I|L}]|[KN]}[KA][YT]{I|L}K{I|L} 9.1676;8.521;6.8757;5.9478;5.9405;3.9771;2.3885;2.0512;1.9613;1.8477 +;+;-;-;-;-;-;-;-;- + 487 + NaN NaN 224296.8 NaN 6861 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9335 46.761 NaN 373320 35 0 92379 0.261 + 826 AVQFTNLTM 9 51 512.759485921623 NaN 0 512.7687377929688 PEAK HCD FTMS 0 0 0 9331 21835.220703125 1 0 0 4 Unmodified _AVQFTNLTM_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 6.723162845929126 0.26266733336404485 1 E 1 9 11.99 0 0 1.1714 0 0 650.2833628571148 241.15574060611564 891.4391034632304 0 0 0 0 0 0.5 0 0 0 E 1.1714 - 54 + NaN NaN 145199.9 NaN 6862 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9336 46.764 NaN 429120 35 0 71997 0.261 + 1084 AYIERMNYI 9 70 594.7896900179466 1187.564827102693 2 594.7896118164062 MULTI HCD FTMS 0 0 0 9331 233814.703125 0.5525464752785415 15 -0.4069480895996094 5 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 60.07390631473393 0.0174780869009295 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[R{M(Oxidation (M))|F}]NY{I|L} 9 0 + 69.147 0 0 5.8226 5.8226 84.908 0 0 0 20.203037561203843 16.478174818886373 16.478174818886373 4.6040937697618745 0 2 1.6989700043360187 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[R{M(Oxidation (M))|F}]NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[R{M(Oxidation (M))|F}]GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{[WT]|[RM]}H{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][WP]NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[QS]|[NT]}{[DS]|[MA]|[CV]|TT}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}{[YD]|[{M(Oxidation (M))|F}M]}C{I|L}{I|L} 5.8226;5.4349;5.0472;4.6047;4.5869;4.5487;4.1385;4.1214;3.9254;3.9076 +;-;-;-;-;-;-;-;-;- + 513 NaN NaN 148244.9 NaN 6863 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9337 46.768 NaN 281380 35 0 34762 0.261 + 9133 HPHDLVILM 9 53 545.7893599966216 1089.564167060043 2 545.7894897460938 MULTI HCD FTMS 0 0 0 9331 46281.7109375 0.27629671135564443 6 -0.1361236572265625 6 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 63.562846038646086 0.012597299157545023 1 {I|L}{I|L}[NP]VQ{[QN]|[E{I|L}]|[KN]} 8 7 43.995 0 0 4.0378 0 0 165.0465025188061 0 165.0465025188061 0 16.893878342760043 0 0 0 1.5 0 1.8851518780601921 0.3054621874040891 {I|L}{I|L}[NP]VQ{[QN]|[E{I|L}]|[KN]} 4.0378 - 336 + NaN NaN 144398.7 NaN 6864 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9338 46.771 NaN 227730 35 0 61976 0.261 + 28478 TPPAHSSVF 9 38 471.7376723698398 941.4607918064796 2 471.73773193359375 MULTI HCD FTMS 0 0 0 9331 69126.421875 0.3086277182870091 -6 0.08463287353515625 7 Unmodified _TPPAHSSVF_ ENST00000377320.3_1_1:9713839-9714497:-|nuORF;nc|ENSG00000179840|Q5SR53|PIK3CD-AS1 7.910154910731844 0.2910521888787154 1 V{M(Oxidation (M))|F} 2 7 30.969 0 0 3.2895 0 0 677.3137103629234 0 677.3137103629234 0 30.969100130080562 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 3.2895 + + 7 + NaN NaN 128187.7 NaN 6865 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9339 46.774 NaN 189250 35 0 37063 0.261 + 32172 VYSRNQGLF 9 30 542.2827864770875 1082.5510200209749 2 542.7842407226562 MULTI HCD FTMS 0 0 0 9331 19931.537109375 0.1456253018833181 -4 0.058429718017578125 8 Unmodified _VYSRNQGLF_ REV__ENSG00000251192|ENST00000683375|ZNF674;REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674;REV__nc|ENSG00000251192|Q2M3X9|ZNF674 13.90604991867851 0.24021115267848145 1 V{I|L}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.3438 0 0 705.3173084943375 0 705.3173084943375 0 32.21848749616356 0 0 0 1 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.3438 - 8 NaN NaN 117007.9 NaN 6866 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9340 46.777 NaN 75800 35 0 14084 0.263 + 34021 YMMVMDHHF 9 39 404.16700060761 1209.4791724230301 3 404.1674499511719 MULTI HCD FTMS 0 0 0 9331 18328.5703125 0.36018103493341075 6 -0.1361236572265625 9 Unmodified _YMMVMDHHF_ ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.2803 0 0 1044.4003282841613 0 1044.4003282841613 0 8.494850021680094 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2803 + + 6 + NaN NaN 93829.2 NaN 6867 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9341 46.781 NaN 92815 35 0 7804.2 0.261 -1 ADKMDMSL 8 46 492.70412209824383 983.3936912632877 2 493.204833984375 MULTI HCD FTMS 0 0 0 9331 42094.30078125 0.8863445018736696 -10 0.13857269287109375 10 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 10.073929032068715 0.5196730168178844 1 S{I|L} 2 -1 30.217 0 0 3.0727 0 0 765.2681396738088 0 765.2681396738088 0 29.10728139283883 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 3.0727 + + 10 NaN NaN 97193.9 NaN 6868 2471 9331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9343 46.786 NaN 19223000 35 0 2668100 0.327 + 544 APEEHPVLL 9 90 502.7741653025147 1003.5337776718294 2 502.774658203125 MULTI HCD FTMS 0 0 0 9342 16500843 0.15825037920608018 16 -0.4304161071777344 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 154.46347324262513 4.107785341423729E-06 1 [PA]EEHPV{I|L}{I|L} 9 0 + 87.437 0 0 8.7129 8.7129 91.021 0 0 0 7.474250108400469 7.474250108400469 7.474250108400469 7.474250108400469 0 2.1237125054200234 1.5228787452803376 1.316901560044258 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[EP]AEHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};EEPAHPV{I|L}{I|L};[VP]HDDPV{I|L}{I|L};[PA]EEH{I|L}{I|L}[VP];[EP]AEH{I|L}VP{I|L} 8.7129;7.9681;7.194;6.5471;6.4873;6.1138;5.6384;5.5219;5.1807;5.0283 +;+;-;-;-;-;-;-;-;- + 1891 NaN NaN 556008.4 NaN 6869 2472 9342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9344 46.79 NaN 4312700 35 0 501070 0.25 + 21814 QAQKDELIL 9 118 529.2979986396278 1056.5814443460556 2 529.2981567382812 MULTI HCD FTMS 0 0 0 9342 3096623.25 0.9445959267771306 3 -0.061237335205078125 2 Unmodified _QAQKDELIL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF 152.88595553498965 5.775426743015152E-06 1 [QA]QKDE{I|L}{I|L}{I|L} 9 0 + 73.213 0 0 6.9293 6.9293 87.611 0 0 0 6.26873236385498 16.47817481888636 6.26873236385498 6.26873236385498 0 2.084121882396211 0 1.4698565171985374 1.9291746928241125 + + [QA]QKDE{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}D{[NV]|[RG]}E{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}DE{I|L}{I|L}{I|L};[QA][AG]KDE{I|L}{I|L}{I|L};[QA]KQDE{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}[DN]{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}DQ[DV]{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}D[DN]{I|L}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[NV]|[RG]}E{I|L}{I|L}{I|L};[KQ]AQDE{I|L}{I|L}{I|L} 6.9293;6.336;6.0673;6.0578;5.7903;5.4987;5.2495;5.2404;5.2265;5.1868 +;-;-;-;-;-;-;-;-;- + 2271 NaN NaN 690246.5 NaN 6870 2472 9342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9346 46.795 NaN 2399300 35 0 186030 0.327 + 1334 AYPHNLMTF 9 96 555.2577602370291 1108.500967540858 2 555.2579345703125 MULTI HCD FTMS 0 0 0 9345 1564529.75 0.953808531684039 -1 0.009304046630859375 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 166.44778350782605 5.759113011535275E-09 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 102.79 0 0 9.2731 9.2731 95.467 0 0 0 27.376430167995878 26.456035908895842 26.456035908895842 14.709836165889797 0 2.5356668758921828 2 0.6861818737241735 0.5501648626366046 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}NMAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TAY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}AYT{M(Oxidation (M))|F};[TP][RN]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}YA 9.2731;7.9461;6.0686;6.01;5.7515;5.6775;5.6309;5.113;5.0951;5.0525 +;-;-;-;-;-;-;-;-;- + 5898 NaN NaN 451400.4 NaN 6871 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9347 46.799 NaN 306550 35 0 42014 0.262 + 1990 DASGPDPQL 9 46 450.20873652864367 898.4029201240874 2 450.20867919921875 MULTI HCD FTMS 0 0 0 9345 243995.953125 0.20915723398685696 11 -0.30599212646484375 2 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 86.33184430468982 0.004622086694044132 1 {[DA]|[EG]}SGPD[QP]{I|L} 9 0 + 81.921 0 0 9.1186 9.1186 96.659 0 0 0 2.117581349478641 2.117581349478641 2.117581349478641 25 0 2.6549471895720984 1.6989700043360187 1.1549471895720984 0 + + {[DA]|[EG]}SGPD[QP]{I|L};{[SA]|[TG]}DGPD[QP]{I|L} 9.1186;6.3358 +;- + 117 NaN NaN 136888.2 NaN 6872 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9348 46.803 NaN 701670 35 0 87416 0.261 + 24775 RYPDNLKHLYL 11 65 477.9297349146328 1430.7673753440984 3 478.26409912109375 MULTI HCD FTMS 0 0 0 9345 268132.28125 0.16508844729334643 22 -0.6243400573730469 3 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 31.44599026986405 0.19204057578885542 1 [YR][DP]N{I|L}[HK]{I|L}Y{I|L} 11 0 + 64.028 0 0 4.4751 4.4751 86.998 0 0 0 10.75235342164693 45.075707659542815 10.75235342164693 12.257724967479867 0 1.805462187404089 0 0.9247425010840047 0.3494850021680094 + + [YR][DP]N{I|L}[HK]{I|L}Y{I|L};[YR][DP]N{I|L}[HK]Y{I|L}{I|L} 4.4751;3.6184 +;- + 97 NaN NaN 193958.2 NaN 6873 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9349 46.806 NaN 299400 35 0 79238 0.261 + 15346 LPDDKVTAL 9 51 486.2738906743877 970.5332284155754 2 486.2737121582031 MULTI HCD FTMS 0 0 0 9345 178782.078125 0.67310082264752 8 -0.21599578857421875 4 Unmodified _LPDDKVTAL_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 51.41523569358685 0.02959097413485123 1 [{I|L}P]DDKVTA{I|L} 9 0 + 77.094 0 0 7.9434 7.9434 94.323 0 0 0 19.535247228595267 14.973024840566467 14.973024840566467 19.535247228595267 0 1.2302046884880937 1.6989700043360187 0.6989700043360187 0 + + [{I|L}P]DDKVTA{I|L};{I|L}PDVVSV{[QD]|[EN]|[WG]|[KD]|[RS]};[VP]EDKVTA{I|L};[DP]{I|L}DKVTA{I|L} 7.9434;5.9306;4.9535;4.8247 +;-;-;- + 229 NaN NaN 139093.2 NaN 6874 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9350 46.809 NaN 189880 35 0 16089 0.261 + 32230 VYTQHQPFL 9 53 566.7929905833986 1131.571428233597 2 566.7930297851562 MULTI HCD FTMS 0 0 0 9345 81953.2890625 0.9648221401312597 -2 0.0450592041015625 5 Unmodified _VYTQHQPFL_ ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45 60.07390631473393 0.0174780869009295 1 [YV]{I|L}QHQTM 8 4 70.143 0 0 6.1987 0 0 0 128.07308193768907 128.07308193768907 55.53904087461092 0 0 0 0 1.3494850021680094 2 0.4247425010840047 0.3807196863200844 [YV]{I|L}QHQTM 6.1987 - 269 NaN NaN 115174.5 NaN 6875 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9351 46.813 NaN 133340 35 0 13098 0.261 -1 CTMPPIHSL 9 44 507.7400624439081 NaN 0 507.739990234375 PEAK HCD FTMS 0 0 0 9345 58311.07421875 0.9448708078482149 1 -0.03911590576171875 6 Oxidation (M) _CTM(Oxidation (M))PPIHSL_ ENST00000428304.6_1_14:23080059-23080410:+|nuORF 15.847184025352803 0.21527282152051216 1 S 1 -1 10.485 0 0 1.0345 0 0 131.09216001673707 792.3188164095552 923.4109764262923 0 0 0 0 0 0.5 0 0 0 S 1.0345 + + 2 + NaN NaN 112966.3 NaN 6876 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9352 46.816 NaN 259090 35 0 26095 0.261 -1 MPTQEVQEL 9 62 545.7578989526138 1089.5012449720275 2 545.7578125 MULTI HCD FTMS 0 0 0 9345 104653.59375 0.33424330196450025 21 -0.5880470275878906 7 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 22.65808497894818 0.16459551161911185 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}{[CA]|SS}VQE{I|L} 10 -1 + 48.517 0 0 4.4532 4.4532 83.021 0 0 0 5.563025007672877 10.218618560633814 5.563025007672877 5.563025007672877 0 1.1861818737241734 1.3010299956639813 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}{[CA]|SS}VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}{[CA]|SS}VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}QE{I|L};[VP]{[CA]|SS}[EC]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]V[AG]E{I|L} 4.4532;3.9426;3.5773;3.5353;3.0974;3.0974;2.8222;2.8211;2.7321 -;-;-;-;-;-;-;-;- 210 NaN NaN 139145.1 NaN 6877 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9353 46.819 NaN 86649 35 0 22179 0.261 + 33430 YGSRLDYFQ 9 32 574.7723812090111 NaN 0 574.7724609375 PEAK HCD FTMS 0 0 0 9345 39565.921875 0.3538126866368178 9 -0.2522735595703125 8 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 6.2057823575117 0.2651744870083793 1 S 1 8 11.99 0 0 1.0448 0 0 220.08534902694754 837.3894156140025 1057.47476464095 0 0 0 0 0 0.5 0 0 0 + S 1.0448 + + 2 + NaN NaN 101933 NaN 6878 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9354 46.823 NaN 110320 35 0 36179 0.263 + -1 YYVCMFFIGLV 11 28 457.5568691781076 1369.648778134523 3 457.556640625 MULTI HCD FTMS 0 0 0 9345 37381.59765625 0.5572695467044325 2 -0.05193328857421875 9 Oxidation (M) _YYVCM(Oxidation (M))FFIGLV_ REV__XKR7|p.A426V|1|0.47|ENSG00000260903|chr20:31996994-31996994|C/T|missense_variant 1.4551175022131473 0.41253901545122046 1 YYS 3 -1 22.932 0 0 1.6743 0 0 0 953.4685772890729 953.4685772890729 22.931825014007217 0 0 0 0 0 1.6989700043360187 0 0 YYS 1.6743 - 5 NaN NaN 113490.2 NaN 6879 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9355 46.826 NaN 103400 35 0 6332.3 0.261 + 22627 QVIGVVLQK 9 46 492.31608815497185 982.6176233767437 2 492.316162109375 MULTI HCD FTMS 0 0 0 9345 30273.12109375 0.7225629491766286 -1 0.009304046630859375 10 Unmodified _QVIGVVLQK_ ENST00000297857.3_1_8:124268339-124279533:-|nuORF 6.723162845929126 0.3000504726104499 1 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}R 4 6 12.703 0 0 1.2928 0 0 0 483.29612146549067 483.29612146549067 3.411290632962718 0 0 0 0 0 0 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}R 1.2928 - 16 + NaN NaN 102831.2 NaN 6880 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9356 46.829 NaN 103410 35 0 16319 0.261 + 20057 NYIMKIHNF 9 50 590.3027118981815 NaN 0 590.3023071289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _NYIMKIHNF_ ENSG00000101126|ENST00000621696|ADNP 29.081581746732265 0.1264406993618811 1 {I|L}MK{I|L} 4 5 22.652 0 0 1.9219 0 0 277.1061665991759 413.1587008111938 690.2648674103697 0 0 0 0 0 1 0 0 0 + {I|L}MK{I|L} 1.9219 + + 24 + NaN NaN 110836 NaN 6881 2473 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9358 46.834 NaN 459510 35 0 86391 0.327 -1 KYMPNVKVAVF 11 67 437.9089275523948 1310.7049532573844 3 437.9092102050781 MULTI HCD FTMS 0 0 0 9357 80868.4765625 0.5643008712042907 -10 0.17560958862304688 1 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 9.764250979337305 0.37200617284565546 1 V{M(Oxidation (M))|F} 2 -1 27.717 0 0 2.1146 0 0 1046.5567482699275 0 1046.5567482699275 0 -3.22559982972642 -3.22559982972642 0 0 0.8252574989159953 0 0 0 V{M(Oxidation (M))|F} 2.1146 + + 185 NaN NaN 160253.7 NaN 6882 2474 9357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9359 46.839 NaN 88685 35 0 14900 0.261 + 9103 HPFHLSDRE 9 40 569.2735708960934 NaN 0 569.2733764648438 PEAK HCD FTMS 0 0 0 9357 24105.6875 0.23761800412699183 5 -0.11439132690429688 2 Unmodified _HPFHLSDRE_ REV__ENSG00000137975|ENST00000370565|CLCA2 9.38312468134398 0.24977752951804 1 P{M(Oxidation (M))|F} 2 -1 14.464 0 0 1.2726 0 0 137.0595524467597 752.3278902643186 889.3874427110784 0 0 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 1.2726 + + 33 + NaN NaN 95606.4 NaN 6883 2474 9357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9360 46.842 NaN 213530 35 0 15836 0.261 + 9393 HPTGKMFIL 9 68 522.2889778458499 NaN 0 522.2893676757812 PEAK HCD FTMS 0 0 0 9357 40364.45703125 0.6397033937836359 -2 0.048419952392578125 3 Unmodified _HPTGKMFIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.1998403495282098 1 CT 2 8 21.083 0 0 2.0223 0 0 131.0953316778776 704.379034393743 835.4743660716206 0 0 0 0 0 0.5 0 0.75 0 CT 2.0223 - 32 + NaN NaN 118107.7 NaN 6884 2474 9357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9362 46.847 NaN 327970 35 0 72454 0.327 + 23695 RQNLRKYFF 9 55 424.57175045416244 1270.6934219626874 3 424.9061584472656 MULTI HCD FTMS 0 0 0 9361 80594.3125 0.15343633108985083 44 -1.2589225769042969 1 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 8.745405648335112 0.2847203663274469 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0437 0 0 958.5453639566311 0 958.5453639566311 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0437 + + 5 + NaN NaN 131331.9 NaN 6885 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9363 46.851 NaN 125470 35 0 26032 0.261 + 27593 TAFPGTDKL 9 36 475.25313682313816 948.4917207130763 2 475.2532653808594 MULTI HCD FTMS 0 0 0 9361 62293.17578125 0.16633226833195167 11 -0.3099555969238281 2 Unmodified _TAFPGTDKL_ ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503 12.240655878213236 0.2545997876781172 1 [TA]{M(Oxidation (M))|F} 3 6 35.686 0 0 3.7624 0 0 0 626.3160364691888 626.3160364691888 35.68636235841012 0 0 0 0 1 1.5228787452803376 0 0 + [TA]{M(Oxidation (M))|F} 3.7624 + + 16 NaN NaN 122087.3 NaN 6886 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9364 46.855 NaN 166440 35 0 17905 0.261 -1 MPDLENRVL 9 45 551.7817484444461 1101.548943955692 2 551.7822265625 MULTI HCD FTMS 0 0 0 9361 100725.890625 0.6417238031793637 5 -0.14112091064453125 3 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 26.020703789607367 0.13554323117744113 1 E{I|L}DPE 5 -1 45.93 0 0 4.1696 0 0 500.30626113105626 0 500.30626113105626 0 24.960762528683702 0 0 0 1.274227503252014 0 0 0 E{I|L}DPE 4.1696 - 48 NaN NaN 109100.8 NaN 6887 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9365 46.858 NaN 92777 35 0 12811 0.261 + 5837 FPDATTTAKQL 11 42 596.8142226374341 1191.6138923416681 2 596.8145141601562 MULTI HCD FTMS 0 0 0 9361 73667.4375 0.7871582792668552 -3 0.061237335205078125 4 Unmodified _FPDATTTAKQL_ ENSG00000112297|ENST00000633556|CRYBG1 51.76506608216692 0.07417021285486863 1 TTADPE 6 8 47.384 0 0 3.9764 0 0 559.3317127912125 0 559.3317127912125 0 16.938200260161125 0 0 0 0.9247425010840047 0 0 0 TTADPE 3.9764 - 34 NaN NaN 102710 NaN 6888 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9366 46.862 NaN 198500 35 0 56536 0.261 + 21996 QFCMFEYPL 9 50 589.256266252861 NaN 0 589.2557373046875 PEAK HCD FTMS 0 0 0 9361 51807.0078125 0.19400374193081804 -6 0.12889862060546875 5 Unmodified _QFCMFEYPL_ ENST00000561721.6_1_17:75089357-75138808:+|nuORF 10.073929032068715 0.24642998803896465 1 {I|L}{M(Oxidation (M))|F}E 3 7 30.005 0 0 2.5504 0 0 131.09587235114833 653.2199801080686 784.315852459217 0 0 0 0 0 1 0 0.3807196863200844 0 {I|L}{M(Oxidation (M))|F}E 2.5504 - 27 + NaN NaN 119600 NaN 6889 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9367 46.865 NaN 193700 35 0 17919 0.261 + 9394 HPTGKMFIL 9 56 522.2889778458499 NaN 0 522.2891235351562 PEAK HCD FTMS 0 0 0 9361 55500.93359375 0.8795890788421836 -1 0.0128173828125 6 Unmodified _HPTGKMFIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 24.020572477871973 0.16041128140741606 1 CT 2 8 21.326 0 0 2.0455 0 0 131.09650989926826 704.3808176391653 835.4773275384337 0 0 0 0 0 0.5 0 0.7742275032520141 0 CT 2.0455 - 15 + NaN NaN 118288.3 NaN 6890 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9368 46.868 NaN 216510 35 0 37419 0.262 + 34824 YRIHFRNKL 9 43 416.2436670485999 NaN 0 416.2433776855469 PEAK HCD FTMS 0 0 0 9361 34182.1796875 0.2537614271314116 15 -0.4341697692871094 7 Unmodified _YRIHFRNKL_ REV__CNTFR|p.C164F|1|0.35|ENSG00000122756|chr9:34557639-34557639|C/A|missense_variant 2.9952420565917617 0.2807323172627736 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 121081.6 NaN 6891 2475 9361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9370 46.873 NaN 367350 35 0 52065 0.327 -1 LPDDPRQMTL 10 65 601.2976210883207 1200.5806892434414 2 601.7794799804688 MULTI HCD FTMS 0 0 0 9369 39636.546875 0.417623998482109 10 -0.2838020324707031 1 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 13.614867670302875 0.3837631382804675 1 [VP]ED[C(Carbamidomethyl (C))Q]NVE 9 -1 43.495 0 0 3.6229 0 0 0 127.11061909211698 127.11061909211698 22.526290382303102 0 0 0 0 0.8807196863200843 0 0.4247425010840047 1.110924374808178 [VP]ED[C(Carbamidomethyl (C))Q]NVE 3.6229 - 658 NaN NaN 144639.9 NaN 6892 2476 9369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9371 46.878 NaN 58352 35 0 3874.3 0.263 -1 RYQQWMERF 9 50 453.8806134964455 1358.6200110895365 3 453.88018798828125 MULTI HCD FTMS 0 0 0 9369 18545.47265625 0.5014734802081505 1 -0.01297760009765625 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 4.5288652416199255 0.31668488241058723 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1397 0 0 1193.5408770336755 0 1193.5408770336755 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1397 + + 12 + NaN NaN 85650.1 NaN 6893 2476 9369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9372 46.881 NaN 134130 35 0 19884 0.261 + 12616 KVPPAINQF 9 56 507.2921018701529 NaN 0 507.29193115234375 PEAK HCD FTMS 0 0 0 9369 30739.97265625 0.3066475536529655 7 -0.20208358764648438 3 Unmodified _KVPPAINQF_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF 14.838274106304384 0.2220448417561729 1 {I|L}M 2 8 12.959 0 0 1.2798 0 0 114.09628937347152 651.3458346002561 765.4421239737277 0 0 0 0 0 0.5 0 0 0 {I|L}M 1.2798 - 6 + NaN NaN 96347.9 NaN 6894 2476 9369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9374 46.886 NaN 1367800 35 0 79081 0.327 + 34229 YPDRIMNTF 9 104 586.7738327790339 1171.5331126248677 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9373 795846.125 0.15519278241333606 12 -0.36244964599609375 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 151.47984550603806 7.261867933578587E-06 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 86.171 0 0 7.3554 7.3554 89.439 0 0 0 14.280199355649827 49.53267166238462 14.280199355649827 8.952176730645064 0 2.662437995416459 1.3979400086720375 0.2302046884880938 0.819341519366547 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};[DP]RY{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 7.3554;6.5913;6.5694;6.0567;5.8053;5.6136;5.5367;5.436;5.2707;4.866 +;-;-;-;-;-;-;-;-;- + 4838 NaN NaN 304704.9 NaN 6895 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9375 46.891 NaN 894200 35 0 182370 0.261 + 24728 RYLVISEKL 9 85 560.8397750929485 1119.6649972526968 2 560.8399047851562 MULTI HCD FTMS 0 0 0 9373 595900.3125 0.3072202191424029 9 -0.2708244323730469 2 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 100.7086487251713 0.004245359191255521 1 [YR]{I|L}V{I|L}SEK{I|L} 9 0 + 80.134 0 0 7.157 7.157 92.168 0 0 0 6.72934937832207 52.10847772334132 6.72934937832207 14.181737155418887 0 2.024227503252014 0 1.0629529932484498 0.6109243748081782 + + [YR]{I|L}V{I|L}SEK{I|L};{I|L}[YR]V{I|L}SEK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVV{I|L}SEK{I|L};[YR]{I|L}V{I|L}ST[VG]{I|L};RY{I|L}V{I|L}SEK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVV{I|L}STR{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{I|L}[KQ]{M(Oxidation (M))|F}K{I|L};R[YV]{I|L}{I|L}SEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]SEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[KQ]EK{I|L} 7.157;5.8904;5.8192;5.0342;4.8672;4.8589;4.7464;4.5232;4.4846;4.1445 +;-;-;-;+;-;-;-;-;- + 1269 NaN NaN 219898.5 NaN 6896 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9376 46.894 NaN 944760 35 0 102650 0.261 + 32325 VYVERAEVL 9 84 539.3006616011938 1076.5867702691876 2 539.30078125 MULTI HCD FTMS 0 0 0 9373 386955.78125 0.49127100826250075 -3 0.05194854736328125 3 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 87.25819977447905 0.004597812622239197 1 VYVERAEV{I|L} 9 0 + 85.889 0 0 7.9779 7.9779 87.239 0 0 0 1.5383557829930794 1.5383557829930794 1.5383557829930794 1.5383557829930794 0 2.9698565171985374 1.6989700043360187 0.8600233437409719 0 + + VYVERAEV{I|L};[YV]VERAEV{I|L};[YV]VERAE{I|L}V;[YV]VERA{I|L}D{I|L};[YV]EVRAEV{I|L};[YV]VERA{I|L}EV;[YV]EVRAE{I|L}V;[YV]EVRA{I|L}D{I|L};[YV]VERV{[CP]|[EA]}{I|L};[YV]EVRA{I|L}EV 7.9779;7.835;7.0672;6.9682;6.5856;6.2004;5.8178;5.7188;5.4383;4.951 +;+;-;-;-;-;-;-;-;- + 1132 + NaN NaN 228754.8 NaN 6897 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9377 46.897 NaN 554980 35 0 102990 0.261 + 15236 LPAAGVGDMVM 11 76 546.7566939524986 1091.4988349717971 2 546.7568359375 MULTI HCD FTMS 0 0 0 9373 244772.234375 0.17010751634052224 -6 0.1361236572265625 4 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 136.33342141710068 0.0032144099819287736 1 [PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 2 [PA]{I|L} + + 98.357 5.6864 2.0224 9.0112 9.0112 68.322 0 0 0 0 88.82719825605817 0 0 0 3.6237125054200234 0 0.9749073637206093 0 [PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.0112 - 1305 + NaN NaN 166476.4 NaN 6898 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9378 46.901 NaN 327810 35 0 40712 0.261 + 1085 AYIERMNYI 9 69 594.7896900179466 1187.564827102693 2 594.789794921875 MULTI HCD FTMS 0 0 0 9373 124465.0078125 0.29413334766011845 21 -0.6324462890625 5 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 55.50274090549119 0.023872834264864425 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 75.302 0 0 6.3409 6.3409 84.932 0 0 0 22.907300390241687 16.478174818886373 16.478174818886373 2.9318250140072166 0 2 2 0 0.75 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERS{[CA]|SS}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERC{[SA]|[TG]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}GGY{I|L} 6.3409;6.094;5.5655;5.5655;4.6907;4.624;4.4119;4.3309;4.2637;4.1622 +;-;-;-;-;-;-;-;-;- + 246 NaN NaN 131370 NaN 6899 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9379 46.904 NaN 139960 35 0 35723 0.261 + 9170 HPISSEELL 9 43 512.7688461166421 1023.5231393000842 2 512.7691040039062 MULTI HCD FTMS 0 0 0 9373 107896.7734375 0.1588310968827821 16 -0.4772834777832031 6 Unmodified _HPISSEELL_ ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921|ETS1 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 7 25.217 0 0 2.4637 0 0 779.3435443907474 0 779.3435443907474 0 16.264100213633768 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.4637 + + 19 NaN NaN 102718.7 NaN 6900 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9380 46.907 NaN 225170 35 0 31716 0.262 + 5613 FLWGFGFFLI 10 47 416.2275562375788 1245.6608393129366 3 416.2276916503906 MULTI HCD FTMS 0 0 0 9373 35622.77734375 0.5371374817305906 -2 0.03913116455078125 7 Unmodified _FLWGFGFFLI_ REV__ENSG00000117262|ENST00000313835|GPR89A;REV__ENSG00000188092|ENST00000314163|GPR89B;REV__ENST00000478307.5_1_1:147400580-147440603:+|nuORF;REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF;REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A 4.3292370932331545 0.45238836448149167 1 {I|L} 1 -1 20.485 0 0 1.6445 0 0 1114.5664006916459 0 1114.5664006916459 0 5.880456295278407 0 0 0 0.5 0 0 0 {I|L} 1.6445 + + 4 + NaN NaN 114849.6 NaN 6901 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9381 46.911 NaN 110080 35 0 18026 0.261 -1 KYLEMIYSM 9 32 605.2799112405139 1208.5452695478277 2 605.2796020507812 MULTI HCD FTMS 0 0 0 9373 77369.046875 0.7448840564645101 8 -0.24786376953125 8 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 1 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 62.256 0 0 5.1513 0 0 404.24263198066564 0 404.24263198066564 0 62.255631547766654 0 0 0 2.3494850021680094 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 5.1513 + + 31 NaN NaN 116514.4 NaN 6902 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9382 46.914 NaN 251200 35 0 59841 0.262 + 20585 PEKFQHIL 8 47 506.2841871945345 1010.5538214558691 2 506.284423828125 MULTI HCD FTMS 0 0 0 9373 64101.21484375 0.8433701954748447 -2 0.03913116455078125 9 Unmodified _PEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 38.175570920033316 0.25436662042464897 1 PEKQ{M(Oxidation (M))|F}H{I|L}{I|L} 8 2 + 61.565 0 0 6.0922 6.0922 90.495 0 0 0 44.74214396804989 6.338483496748708 6.338483496748708 15.72559982972642 0 2.473197507588033 1.6989700043360187 0 0 PEKQ{M(Oxidation (M))|F}H{I|L}{I|L};[EP]KK{[WN]|[YH]}P{I|L};[TP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VG]H{I|L}{I|L};[H{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KEP{I|L};[TP][VG]K{[WN]|[YH]}P{I|L} 6.0922;4.536;1.7443;1.5245;1.2201 -;-;-;-;- 138 + NaN NaN 135602 NaN 6903 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9383 46.917 NaN 69367 35 0 9906.9 0.261 -1 DVLFWCVI 8 37 526.2658852900593 NaN 0 526.2658081054688 PEAK HCD FTMS 0 0 0 9373 32131.37890625 0.6355566626826061 3 -0.10198974609375 10 Carbamidomethyl (C) _DVLFWC(Carbamidomethyl (C))VI_ ENSG00000033867|ENST00000454389|SLC4A7;ENST00000475120.1_1_3:27439670-27439817:-|nuORF;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7 14.581692164780916 0.38795613832665576 1 V 1 -1 10.797 0 0 1.0278 0 0 131.09489733795152 817.3289278619749 948.4238251999263 0 0 0 0 0 0.3807196863200844 0 0 0 V 1.0278 + + 5 + NaN NaN 84720.5 NaN 6904 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9384 46.921 NaN 80454 35 0 11616 0.261 + -1 MSSLHGTREE 10 36 581.7619957805291 1161.5094386278581 2 581.7623901367188 MULTI HCD FTMS 0 0 0 9373 16063.1865234375 0.4529348693836604 1 -0.03951263427734375 11 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 8.155526934196011 0.43213520406898465 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 24.705 0 0 2.127 0 0 0 837.3910053605331 837.3910053605331 24.704999916446795 0 0 0 0 1 0 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 2.127 + + 9 NaN NaN 107911.1 NaN 6905 2477 9373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9386 46.926 NaN 326670 35 0 92668 0.326 + 20794 PHEISNVF 8 47 471.7376723698398 941.4607918064796 2 471.73779296875 MULTI HCD FTMS 0 0 0 9385 192522.828125 0.8595538370237794 1 -0.022930145263671875 1 Unmodified _PHEISNVF_ tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1 18.13498045792455 0.4603629008820478 1 V{M(Oxidation (M))|F} 2 6 30.969 0 0 3.2895 0 0 677.3137408805015 0 677.3137408805015 0 30.969100130080562 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 3.2895 + + 6 + NaN NaN 136550.5 NaN 6906 2478 9385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9387 46.93 NaN 315590 35 0 73965 0.261 + 24919 RYSGNQVLF 9 51 542.2827864770875 1082.5510200209749 2 542.2830810546875 MULTI HCD FTMS 0 0 0 9385 147339.828125 0.8143774523194355 3 -0.085418701171875 2 Unmodified _RYSGNQVLF_ ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant 19.256988751693697 0.19398022840297344 1 WV{I|L}{M(Oxidation (M))|F} 4 6 44.553 0 0 4.1155 0 0 519.2571888654312 0 519.2571888654312 0 34.095019080956064 0 0 0 1.5 0 0 0 WV{I|L}{M(Oxidation (M))|F} 4.1155 - 109 NaN NaN 149838 NaN 6907 2478 9385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9388 46.934 NaN 48654 35 0 11704 0.261 -1 IYADNQVMHF 10 25 627.2846565519511 1252.5547601707021 2 627.2850952148438 MULTI HCD FTMS 0 0 0 9385 27498.748046875 0.514892329576228 -5 0.13057708740234375 3 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 22.736283301280096 0.29844449404982915 1 [Y{I|L}]AD 4 -1 41.995 0 0 3.3527 0 0 0 787.3212374322874 787.3212374322874 35.00508444608478 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]AD 3.3527 + + 7 + NaN NaN 109906.7 NaN 6908 2478 9385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9389 46.937 NaN 94879 35 0 7273.2 0.262 -1 0 46 531.5516636241231 2122.177548630092 4 531.5513305664062 MULTI HCD FTMS 0 0 0 9385 16578.6484375 0.526117128396108 -8 0.18508148193359375 4 NaN NaN 1 {I|L} 1 -1 3.9794 0 0 0.18751 0 0 1210.7066146474733 795.3595675104124 2006.0661821578856 0 0 0 0 0 0 0 0 0 {I|L} 0.18751 - 3 + NaN NaN 107166 NaN 6909 2478 9385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9390 46.94 NaN 27749 35 0 7026.4 0.261 + 14378 LEESVKEERK 10 17 623.8379712994275 NaN 0 623.83837890625 PEAK HCD FTMS 0 0 0 9385 21829.009765625 0.6843242642205066 -1 0.03951263427734375 5 Unmodified _LEESVKEERK_ ENSG00000185163|ENST00000397333|DDX51 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103886.4 NaN 6910 2478 9385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9391 46.944 NaN 12416 35 0 2749.7 0.261 -1 LHWCRTMCR 9 10 631.789794921875 NaN 0 631.789794921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _LHWCRTMC(Carbamidomethyl (C))R_ ENST00000523376.5_1_11:14926852-14929496:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93794.7 NaN 6911 2478 9385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9393 46.949 NaN 5818100 35 0 708250 0.327 + 545 APEEHPVLL 9 101 502.7741653025147 1003.5337776718294 2 502.774658203125 MULTI HCD FTMS 0 0 0 9392 4240024.5 0.04066370942188048 23 -0.6796913146972656 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 161.8943921545576 8.236690082142223E-09 1 APEEHPV{I|L}{I|L} 9 0 + 80.425 0 0 8.0141 8.0141 95.153 0 0 0 36.195198661293304 11.39506772603255 11.39506772603255 26.937383190770667 0 2.5189301784845295 1.3979400086720375 0.9194451763165201 0 + + APEEHPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};{[YC]|[HE]}E[VP]PA{I|L}{I|L};[VP]{I|L}AHEEP{I|L};[EP]E[HV]PA{I|L}{I|L};[VP]{I|L}AHEPE{I|L};{[YC]|[HE]}E[VP]{I|L}PA{I|L};{[YC]|[HE]}E[VP]P{I|L}A{I|L};{[YC]|[HE]}E[PA]{I|L}VP{I|L} 8.0141;5.3299;5.0378;4.3251;3.7431;3.7159;3.6562;3.6063;3.6019;3.3826 +;-;-;-;-;-;-;-;-;- + 1131 + NaN NaN 661552.3 NaN 6912 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9394 46.953 NaN 1559900 35 0 129010 0.261 + 1335 AYPHNLMTF 9 90 555.2577602370291 1108.500967540858 2 555.258056640625 MULTI HCD FTMS 0 0 0 9392 876440.8125 0.5343182029479409 5 -0.15248489379882812 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 149.9946105101851 8.83195450578534E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 100.82 0 0 9.0948 9.0948 95.414 0 0 0 24.76203644159419 36.86079756862951 24.76203644159419 15.348017428648063 0 2.5356668758921828 2 0.4247425010840047 0.6139829889124311 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]Q{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TAY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AHNPYT{M(Oxidation (M))|F} 9.0948;7.7102;6.4357;6.4292;6.1625;5.8316;5.8127;5.7173;5.3846;5.0571 +;-;-;-;-;-;-;-;-;- + 4539 NaN NaN 320429.2 NaN 6913 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9395 46.957 NaN 1112700 35 0 146100 0.261 + 21815 QAQKDELIL 9 99 529.2979986396278 1056.5814443460556 2 529.2982788085938 MULTI HCD FTMS 0 0 0 9392 619215.4375 0.18888587110492658 10 -0.3000068664550781 3 Unmodified _QAQKDELIL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF 89.40071534611396 0.0045416704840156395 1 QKD{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 7 3 63.166 0 0 5.9784 0 0 181.0848103253922 0 181.0848103253922 0 34.841284356197235 0 0 0 0.5 0 1.372363747448347 1.1747425010840047 QKD{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5.9784 - 1563 NaN NaN 251294.8 NaN 6914 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9396 46.96 NaN 1046700 35 0 197690 0.261 + 10502 IPEKFQHIL 9 75 562.8266746428853 1123.6387963525706 2 562.826904296875 MULTI HCD FTMS 0 0 0 9392 427717.28125 0.8516172414413169 -1 0.022930145263671875 4 Unmodified _IPEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 100.0907132914201 0.004261551473353346 1 [{I|L}P]EK{M(Oxidation (M))|F}QH{I|L}{I|L} 9 0 + 102.66 0 0 9.1364 9.1364 91.467 0 0 0 7.231975075880328 16.478174818886373 7.231975075880328 7.231975075880328 0 2.6307196863200843 1.5228787452803376 1.4291746928241125 0 + + [{I|L}P]EK{M(Oxidation (M))|F}QH{I|L}{I|L};{I|L}PEK{M(Oxidation (M))|F}QH{I|L}{I|L};[{I|L}P]EK{M(Oxidation (M))|F}[AG]H{I|L}{I|L};[EP]{I|L}K{M(Oxidation (M))|F}QH{I|L}{I|L};{I|L}PEK{M(Oxidation (M))|F}[AG]H{I|L}{I|L};[EP]{I|L}K{M(Oxidation (M))|F}[AG]H{I|L}{I|L};{I|L}P{M(Oxidation (M))|F}{I|L}GSQH{I|L}{I|L};[{I|L}P][SG]{I|L}{M(Oxidation (M))|F}QH{I|L}{I|L};[EP]K{I|L}{M(Oxidation (M))|F}QH{I|L}{I|L};{I|L}P{M(Oxidation (M))|F}{I|L}GS[AG]H{I|L}{I|L} 9.1364;8.4928;8.3169;8.2226;7.6733;7.4031;7.3612;7.3322;7.2379;6.5456 +;+;-;-;-;-;-;-;-;- + 2090 NaN NaN 240940.2 NaN 6915 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9397 46.963 NaN 464610 35 0 50169 0.261 + 24776 RYPDNLKHLYL 11 81 477.9297349146328 1430.7673753440984 3 477.9296875 MULTI HCD FTMS 0 0 0 9392 190199.09375 0.10390249057150057 27 -0.7995796203613281 5 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 31.44599026986405 0.19204057578885542 1 SC(Carbamidomethyl (C))H{I|L}Y{I|L} 6 7 52.26 0 0 3.6526 0 0 639.3971424787125 0 639.3971424787125 0 34.81319284824272 0 0 0 0.5 0 1.5629529932484498 0 SC(Carbamidomethyl (C))H{I|L}Y{I|L} 3.6526 - 232 NaN NaN 153650.4 NaN 6916 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9398 46.967 NaN 250280 35 0 66717 0.261 + 27550 TADGAHFEL 9 44 480.7245288847812 959.4345048363624 2 480.7247619628906 MULTI HCD FTMS 0 0 0 9392 142280.453125 0.48866480208106045 -2 0.062442779541015625 6 Unmodified _TADGAHFEL_ ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF 81.89019881105858 0.005240739447516426 1 [TA]DQH{M(Oxidation (M))|F}E{I|L} 8 2 + 71.151 0 0 7.416 7.416 88.616 0 0 0 6.00833760139686 50.420787969958454 6.00833760139686 6.505149978319906 0 1.6677353201839438 1.6989700043360187 1.110924374808178 0 [TA]DQH{M(Oxidation (M))|F}E{I|L};[TA]DQHE{M(Oxidation (M))|F}{I|L} 7.416;6.738 -;- 72 NaN NaN 117996.4 NaN 6917 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9399 46.97 NaN 204350 35 0 13748 0.261 -1 ADKMDMSL 8 57 492.70412209824383 983.3936912632877 2 492.7046203613281 MULTI HCD FTMS 0 0 0 9392 62017.234375 0.6530322103192865 -10 0.23047256469726562 7 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 24.990960013464015 0.4099192402711616 1 {M(Oxidation (M))|F}S{I|L} 3 -1 29.314 0 0 2.9809 0 0 618.2311268537125 0 618.2311268537125 0 11.8396798272512 0 0 0 0.5 0 0.28872548999643577 0 {M(Oxidation (M))|F}S{I|L} 2.9809 + + 52 NaN NaN 128308 NaN 6918 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9400 46.973 NaN 290030 35 0 44726 0.261 + 25477 SFDSGSVRL 9 60 484.24591973427187 966.4772865353438 2 484.24554443359375 MULTI HCD FTMS 0 0 0 9392 89585.2265625 0.7040278361811783 -1 0.022930145263671875 8 Unmodified _SFDSGSVRL_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 55.50274090549119 0.023872834264864425 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSGSV[R{I|L}] 9 0 + 67.425 0 0 6.9764 6.9764 88.465 0 0 0 51.9408341705779 5.6424927368725974 5.6424927368725974 8.092634077523186 0 2.278659694992122 2 0.8494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSGSV[R{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSGSVG[{I|L}V];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSGSR[{I|L}V];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}SGSV[R{I|L}];{[SA]|[TG]}{[YD]|[{M(Oxidation (M))|F}M]}GSV[R{I|L}];{[SA]|[TG]}{[YD]|[{M(Oxidation (M))|F}M]}GSR[{I|L}V] 6.9764;6.1391;5.5174;3.1537;1.2715;0.60252 +;-;-;-;-;- + 197 + NaN NaN 126342.3 NaN 6919 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9401 46.977 NaN 76602 35 0 6135 0.261 + 32231 VYTQHQPFL 9 39 566.7929905833986 1131.571428233597 2 566.7927856445312 MULTI HCD FTMS 0 0 0 9392 44765.73046875 0.5270193346658705 4 -0.1266632080078125 9 Unmodified _VYTQHQPFL_ ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45 25.399314129420986 0.14091189997036632 1 [YV]{I|L} 3 6 37.447 0 0 3.3093 0 0 0 753.3323894975221 753.3323894975221 31.962724883926654 0 0 0 0 1 1.6989700043360187 0 0 [YV]{I|L} 3.3093 - 26 NaN NaN 98038.1 NaN 6920 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9402 46.98 NaN 61368 35 0 8741.3 0.263 + 1991 DASGPDPQL 9 32 450.20873652864367 898.4029201240874 2 450.2086181640625 MULTI HCD FTMS 0 0 0 9392 47025.90625 0.04031135906560027 17 -0.5072059631347656 10 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 18.1463463914782 0.20357593197100715 1 C{I|L} 2 8 19.464 0 0 2.1665 0 0 664.3129139630875 0 664.3129139630875 0 8.979400086720375 0 0 0 0 0 0 0 C{I|L} 2.1665 - 5 NaN NaN 97995.8 NaN 6921 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9403 46.983 NaN 66634 35 0 5756.7 0.261 + 24975 RYTYSEWHSF 10 50 459.2064645661567 1374.59756429867 3 459.2068786621094 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _RYTYSEWHSF_ ENSG00000134755|ENST00000280904|DSC2;ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134755|Q02487-2|DSC2;nc|ENSG00000134762|Q14574-2|DSC3 5.047519993296601 0.4485863789024576 1 E 1 9 6.9897 0 0 0.50849 0 0 670.3066840269888 572.2274263971311 1242.53411042412 0 0 0 0 0 0 0 0 0 + E 0.50849 + + 5 + NaN NaN 104983.9 NaN 6922 2479 9392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9405 46.988 NaN 190540 35 0 26029 0.326 + 20936 PLAQEEDSEP 10 44 557.7474900055759 1113.4804270779516 2 557.748291015625 MULTI HCD FTMS 0 0 0 9404 86708.8828125 0.5123571053459607 -3 0.10198974609375 1 Unmodified _PLAQEEDSEP_ ENST00000448979.3_1_12:53900562-53901037:-|nuORF;nc|ENSG00000139574|O15130-2|NPFF 12.240655878213236 0.39661705172222156 1 {I|L}PAAGV 6 9 78.889 0 0 7.0849 0 0 0 602.1561727583926 602.1561727583926 57.90266824002046 0 0 0 0 1.774227503252014 1.6989700043360187 0 0 {I|L}PAAGV 7.0849 - 123 + NaN NaN 106130.4 NaN 6923 2480 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9406 46.993 NaN 238600 35 0 18426 0.261 + 28033 TGAFQQADF 9 62 492.7246507895606 983.4347486459212 2 492.7249450683594 MULTI HCD FTMS 0 0 0 9404 89070.921875 0.6945883463604057 -2 0.06247711181640625 2 Unmodified _TGAFQQADF_ REV__ENSG00000176919|ENST00000371634|C8G 24.020572477871973 0.15282392193088168 1 A{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.3346 0 0 747.3136463849625 0 747.3136463849625 0 11.07963467823147 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 2.3346 + + 25 NaN NaN 128450.4 NaN 6924 2480 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9407 46.996 NaN 211090 35 0 33873 0.261 + 4954 FASLYEKST 9 62 523.2616076675605 1044.508662401921 2 523.2620239257812 MULTI HCD FTMS 0 0 0 9404 66473.984375 1 0 0 3 Unmodified _FASLYEKST_ REV__ENSG00000083097|ENST00000349129|DOP1A 21.74664581756881 0.17247014374749275 1 S{I|L}YCTQ{I|L} 7 -1 39.972 0 0 3.8268 0 0 218.10545546699376 0 218.10545546699376 0 21.939425527995127 0 0 0 0.4489700043360188 0 1.1989700043360187 0.3807196863200844 S{I|L}YCTQ{I|L} 3.8268 - 158 NaN NaN 126059.8 NaN 6925 2480 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9408 46.999 NaN 194210 35 0 31123 0.261 + 24855 RYQDAIRVF 9 53 584.3170272691219 1166.6195016050438 2 584.3174438476562 MULTI HCD FTMS 0 0 0 9404 70123.015625 0.6268421166576693 -2 0.06247711181640625 4 Unmodified _RYQDAIRVF_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 22.65808497894818 0.16459551161911185 1 RDQY 4 7 19.725 0 0 1.6908 0 0 264.14877263772956 337.1993502252563 601.3481228629859 0 0 0 0 0 0 0 0 0.3807196863200844 RDQY 1.6908 - 121 + NaN NaN 116061.3 NaN 6926 2480 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9409 47.003 NaN 80478 35 0 9682 0.262 -1 RYLSPKYIKMF 11 40 487.93571134465225 1460.7853046341568 3 488.26995849609375 MULTI HCD FTMS 0 0 0 9404 28728.427734375 0.35740470758038534 11 -0.319427490234375 5 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 5.868138319507137 0.39318500527288264 1 V 1 -1 3.4949 0 0 0.23924 0 0 923.4766631320068 435.2169588678344 1358.6936219998413 0 0 0 0 0 0 0 0 0 V 0.23924 - 6 + NaN NaN 105957.5 NaN 6927 2480 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9410 47.006 NaN 63181 35 0 5195.2 0.261 + -1 PLHPFMVM 8 38 494.2430866651599 986.4716203971199 2 494.2446594238281 MULTI HCD FTMS 0 0 0 9404 22983.197265625 0.49812503545216646 5 -0.1458740234375 6 Oxidation (M) _PLHPFMVM(Oxidation (M))_ REV__ENSG00000171116|ENST00000370416|HSFX1;REV__ENSG00000268738|ENST00000598963|HSFX2 11.114462752807354 0.5120171699125776 1 V{M(Oxidation (M))|F} 2 -1 26.454 0 0 2.6816 0 0 722.3578641488762 0 722.3578641488762 0 19.49092531119419 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.6816 + + 28 + NaN NaN 89615 NaN 6928 2480 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9412 47.011 NaN 457430 35 0 87949 0.327 + 25043 SAAGKDWAF 9 56 476.7289903481078 951.4434277630156 2 476.7296447753906 MULTI HCD FTMS 0 0 0 9411 323131.4375 0.9620419668956232 -1 0.02294158935546875 1 Unmodified _SAAGKDWAF_ ENSG00000160256|ENST00000291634|SLX9;nc|ENSG00000160256|Q9NSI2-2|SLX9 55.23464941255904 0.024247875903973527 1 {[SA]|[TG]}AGKDWA{M(Oxidation (M))|F} 9 0 + 77.916 0 0 8.1892 8.1892 90.612 0 0 0 10.214074605252605 61.717904135829755 10.214074605252605 8.46787486224656 0 2.2302046884880937 1.5228787452803376 0.3252574989159953 0 + + {[SA]|[TG]}AGKDWA{M(Oxidation (M))|F};{[SA]|[TG]}QKDWA{M(Oxidation (M))|F};[QT]GKDWA{M(Oxidation (M))|F};{[SA]|[TG]}[YT]{[HG]|PP}VA{M(Oxidation (M))|F};[KG][QT]DWA{M(Oxidation (M))|F};{[SA]|[TG]}A[HA]{NN|[MP]|[D{I|L}]|[EV]}G[NP];{[SA]|[TG]}AG{NN|[MP]|[D{I|L}]|[EV]}[HA][NP];{[SA]|[TG]}Q{NN|[MP]|[D{I|L}]|[EV]}[HA][NP];{[TV]|[{I|L}S]}[EC][{I|L}A]VA{M(Oxidation (M))|F};[WH][WR]G[NP] 8.1892;7.2992;5.7777;3.9529;2.896;2.2297;2.2297;2.0687;1.5996;1.2309 +;-;-;-;-;-;-;-;-;- + 394 NaN NaN 155247 NaN 6929 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9413 47.016 NaN 490010 35 0 153140 0.261 -1 EEEWPMDIL 9 53 589.256266252861 NaN 0 589.2562255859375 PEAK HCD FTMS 0 0 0 9411 267041.28125 1 0 0 2 Oxidation (M) _EEEWPM(Oxidation (M))DIL_ ENST00000361478.1_1_X:68382663-68382804:-|nuORF 16.942295170755138 0.2079222001251384 1 {I|L}{M(Oxidation (M))|F}E 3 -1 36.427 0 0 3.0962 0 0 131.09552074562913 653.2198651765019 784.3153859221311 0 0 0 0 0 1.2614393726401687 0 0.7614393726401688 0 {I|L}{M(Oxidation (M))|F}E 3.0962 - 40 + NaN NaN 167050.3 NaN 6930 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9414 47.019 NaN 406220 35 0 68669 0.261 -1 LPDDPRQMTL 10 61 601.2976210883207 1200.5806892434414 2 601.7791748046875 MULTI HCD FTMS 0 0 0 9411 32391.150390625 0.3412840625150482 15 -0.4447174072265625 3 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 13.614867670302875 0.3837631382804675 1 [VP]ED{[C(Carbamidomethyl (C))G]|[NC]}ANVT 10 -1 43.765 0 0 3.6453 0 0 0 155.1049606826979 155.1049606826979 27.08220305641312 0 0 0 0 0.8252574989159953 0 0.3494850021680094 1.1549471895720984 [VP]ED{[C(Carbamidomethyl (C))G]|[NC]}ANVT 3.6453 - 364 NaN NaN 142431.3 NaN 6931 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9415 47.022 NaN 349780 35 0 59974 0.264 + 23696 RQNLRKYFF 9 65 424.57175045416244 1270.6934219626874 3 424.5718688964844 MULTI HCD FTMS 0 0 0 9411 101588.953125 0.13931789293057947 49 -1.4281730651855469 4 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 23.94 0 0 1.884 0 0 958.5450434545472 0 958.5450434545472 0 4.476212463643421 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.884 + + 20 NaN NaN 150446 NaN 6932 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9416 47.026 NaN 265710 35 0 31331 0.261 + 2284 DLPYEQARL 9 71 552.7874497778522 1103.5603466225043 2 552.787841796875 MULTI HCD FTMS 0 0 0 9411 104263.71875 1 0 0 5 Unmodified _DLPYEQARL_ ENST00000216407.4_1_12:68867655-68868498:+|nuORF 29.081581746732265 0.1154664336125038 1 [DP]{I|L}YREQA{I|L} 9 4 + 80.729 0 0 7.3153 7.3153 90.36 0 0 0 25.55893334815522 66.96317717979021 25.55893334815522 9.208187539523749 0 1.9247425010840047 1.6989700043360187 0.6421590589602533 0.4247425010840047 [DP]{I|L}YREQA{I|L};[DP]{I|L}YRE[AG]A{I|L};[DP]{I|L}Y{[QN]|[E{I|L}]|[KN]}[NG]A{I|L};[DP]{I|L}[HA]{NN|[MP]|[D{I|L}]|[EV]}NP{I|L};[YN][KP]AAEQA{I|L};[MN]DK{I|L}[KP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[HT][KQ]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{[HG]|PP};[YN][KQ]{NN|[MP]|[D{I|L}]|[EV]}NP{I|L};[DP][RH]K[PA]{[{M(Oxidation (M))|F}H]|[RQ]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]{NN|[MP]|[D{I|L}]|[EV]}NP{I|L} 7.3153;6.4809;4.4905;2.9893;1.8431;1.1083;0.50677;0.30824;0.16108;0.14868 -;-;-;-;-;-;-;-;-;- 917 NaN NaN 122496.7 NaN 6933 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9417 47.029 NaN 371750 35 0 77245 0.261 + 23541 RPAQVEPLL 9 48 511.8031671489324 1021.5917813646648 2 511.8030090332031 MULTI HCD FTMS 0 0 0 9411 129128.03125 0.29257485531089844 -4 0.12493133544921875 6 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 29.84058131909904 0.11198220037953927 1 [{I|L}P]{[QN]|[E{I|L}]|[KN]}VEP{I|L} 8 3 49.654 0 0 4.8604 0 0 0 128.07182633261564 128.07182633261564 36.72836687310182 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 [{I|L}P]{[QN]|[E{I|L}]|[KN]}VEP{I|L} 4.8604 - 49 NaN NaN 142050.7 NaN 6934 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9418 47.032 NaN 176450 35 0 16729 0.261 -1 QSVDEDPML 9 49 525.2264347918305 1048.4383166504608 2 525.2264404296875 MULTI HCD FTMS 0 0 0 9411 41276.77734375 0.7737453265821962 1 -0.03627777099609375 7 Oxidation (M) _QSVDEDPM(Oxidation (M))L_ ENSG00000140254|ENST00000560572|DUOXA1;nc|ENSG00000140254|Q1HG43-2|DUOXA1;nc|ENSG00000140254|Q1HG43-3|DUOXA1 13.042465956692817 0.2476723265019929 1 DP{I|L}{M(Oxidation (M))|F} 4 -1 37.167 0 0 3.545 0 0 558.2295896990921 0 558.2295896990921 0 12.703037561203843 0 0 0 1 0 0 0 DP{I|L}{M(Oxidation (M))|F} 3.545 - 54 + NaN NaN 106635.7 NaN 6935 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9419 47.036 NaN 199660 35 0 32330 0.261 + -1 MIIGSEDCDM 10 54 573.2122541632746 1144.409955393349 2 573.212646484375 MULTI HCD FTMS 0 0 0 9411 51596.578125 0.7621828023639298 -3 0.085418701171875 8 2 Oxidation (M) _M(Oxidation (M))IIGSEDCDM(Oxidation (M))_ REV__ENSG00000158553|ENST00000444565|POM121L2 1.6526216038709556 0.46655611578153744 1 YYA 3 -1 25.942 0 0 2.2669 0 0 0 744.2224608467271 744.2224608467271 16.901056208558032 0 0 0 0 0 2 0 0 YYA 2.2669 - 39 NaN NaN 118613.3 NaN 6936 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9420 47.039 NaN 57099 35 0 9022 0.261 + 18100 MPAETIKEL 9 31 516.2754586950321 1030.536364456864 2 516.2755737304688 MULTI HCD FTMS 0 0 0 9411 27391.7109375 0.6770017657151204 2 -0.06417465209960938 9 Unmodified _MPAETIKEL_ ENSG00000122870|ENST00000373886|BICC1;nc|ENSG00000122870|Q9H694-2|BICC1 7.608950283845883 0.29333554423920943 1 MPR 3 7 24.693 0 0 2.3961 0 0 0 643.3203829400999 643.3203829400999 14.23516269895728 0 0 0 0 0 0 0 0 MPR 2.3961 - 5 + NaN NaN 82871.5 NaN 6937 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9421 47.042 NaN 84404 35 0 12280 0.261 + 34208 YPDPYGGEKL 10 39 569.7743913034163 1137.5342296736326 2 569.2734375 MULTI HCD FTMS 0 0 0 9411 20601.5390625 0.5845543798568139 -11 0.27050018310546875 10 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 2.735195868890462 0.4608258780945842 1 P{M(Oxidation (M))|F} 2 9 9.464 0 0 0.83197 0 0 138.05957302573455 752.3298433893186 890.3894164150531 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 0.83197 - 8 + NaN NaN 100201.6 NaN 6938 2481 9411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9423 47.047 NaN 1939600 35 0 379990 0.327 + 15237 LPAAGVGDMVM 11 87 546.7566939524986 1091.4988349717971 2 546.757080078125 MULTI HCD FTMS 0 0 0 9422 1230556.25 0.8551904097264167 -1 0.03627777099609375 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 188.57702930522862 3.032490035407491E-14 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 118.52 0 0 10.859 10.859 95.596 0 0 0 15.179932493774928 90.5551732784983 15.179932493774928 11.575773191777927 0 4.004432191740108 1.3010299956639813 1.1549471895720984 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAGV[EC]SV{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQV[EC]SV{M(Oxidation (M))|F};[{I|L}P]AAGVG[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F} 10.859;9.7983;9.0785;8.6998;8.528;8.4731;8.018;7.8602;7.4126;7.3021 +;-;-;-;-;-;-;-;-;- + 3060 NaN NaN 383294.8 NaN 6939 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9424 47.052 NaN 946230 35 0 108910 0.261 + 32326 VYVERAEVL 9 82 539.3006616011938 1076.5867702691876 2 539.3007202148438 MULTI HCD FTMS 0 0 0 9422 562731.25 0.7144318859257704 2 -0.05371856689453125 2 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 87.25819977447905 0.004597812622239197 1 [YV]VERAEV{I|L} 9 0 + 94.193 0 0 8.7492 8.7492 87.938 0 0 0 0.4806908867895032 0.4806908867895032 0.4806908867895032 0.4806908867895032 0 2.5114393726401687 2 0.3494850021680094 0 + + [YV]VERAEV{I|L};VYVERAEV{I|L};[YV]VERAE{I|L}V;[YV]VERA{I|L}D{I|L};[YV]VERA{I|L}EV;[YV]VERV{[CP]|[EA]}{I|L};VYVEGV[NG]K{I|L};[YV]VERV[DV]V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]GVAEV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DV]VAEV{I|L} 8.7492;8.7045;7.9814;7.7793;7.0115;6.0721;5.7486;5.3043;5.0301;4.3399 +;+;-;-;-;-;-;-;-;- + 2061 NaN NaN 232111.9 NaN 6940 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9425 47.055 NaN 652310 35 0 44447 0.261 + 34230 YPDRIMNTF 9 94 586.7738327790339 1171.5331126248677 2 586.774169921875 MULTI HCD FTMS 0 0 0 9422 378065.4375 0.07372408476568282 17 -0.4978981018066406 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 143.21322497773306 1.6000761055044888E-05 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 92.473 0 0 7.8933 7.8933 88.988 0 0 0 5.744710877642746 5.744710877642746 5.744710877642746 5.744710877642746 0 2.973197507588033 1.6989700043360187 2.1643943297944483 0.6237125054200234 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 7.8933;7.403;7.1073;6.8996;6.617;6.365;6.1136;5.7923;5.579;5.4265 +;+;-;-;-;-;-;-;-;- + 3978 + NaN NaN 189332.6 NaN 6941 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9426 47.059 NaN 799950 35 0 55200 0.264 + 35425 YYEKLHTYF 9 83 421.8729716370388 1262.5970855113164 3 421.8733215332031 MULTI HCD FTMS 0 0 0 9422 222941.96875 0.2149790506602111 -4 0.12169647216796875 4 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 42.312485326615175 0.05472917415473307 1 YYEK{I|L}[HT]Y{M(Oxidation (M))|F} 9 0 + 73.911 0 0 5.8539 5.8539 86.708 0 0 0 50.199718873656636 15.691446804494902 15.691446804494902 8.75569708000178 0 1.1861818737241734 2 0.4247425010840047 0 + + YYEK{I|L}[HT]Y{M(Oxidation (M))|F};YYEK[QT]{[RE]|[WV]}{M(Oxidation (M))|F};YYEK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WQ]{I|L} 5.8539;5.1604;4.2067 +;-;- + 251 + NaN NaN 208372.8 NaN 6942 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9427 47.062 NaN 282430 35 0 58824 0.261 + 4952 FASLPQVER 9 62 523.785112832174 1045.555672731148 2 523.78515625 MULTI HCD FTMS 0 0 0 9422 117087.3046875 1 0 0 5 Unmodified _FASLPQVER_ ENSG00000071127|ENST00000499869|WDR1;ENST00000509600.1_1_4:10117520-10118290:-|nuORF;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 36.506200033944 0.08138327636155518 1 {[MS]|[{M(Oxidation (M))|F}A]}S{I|L}{[YC]|[HE]}TQ 8 5 37.457 0 0 3.5825 0 0 0 129.12462645949725 129.12462645949725 23.47804375441612 0 0 0 0 1.5 0 1.2614393726401687 0 {[MS]|[{M(Oxidation (M))|F}A]}S{I|L}{[YC]|[HE]}TQ 3.5825 - 141 NaN NaN 122893.6 NaN 6943 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9428 47.065 NaN 56295 35 0 5990.2 0.261 + -1 RTYFFMLKA 9 36 596.8142226374341 1191.6138923416681 2 596.8145751953125 MULTI HCD FTMS 0 0 0 9422 22635.30078125 0.24186485940489588 4 -0.10961532592773438 6 Oxidation (M) _RTYFFM(Oxidation (M))LKA_ REV__ENSG00000117707|ENST00000366958|PROX1 3.5964929083625545 0.32375295897743744 1 {I|L}[KA] 3 -1 7.4473 0 0 0.62497 0 0 861.3909779279312 0 861.3909779279312 0 0 0 0 0 0 0 0 0 {I|L}[KA] 0.62497 + + 3 NaN NaN 109706 NaN 6944 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9429 47.069 NaN 88535 35 0 17813 0.261 -1 KYPSDLPYM 9 31 565.2651746435198 NaN 0 565.2645874023438 PEAK HCD FTMS 0 0 0 9422 5600.14599609375 0.2062179914465493 1 -0.027896881103515625 7 Oxidation (M) _KYPSDLPYM(Oxidation (M))_ ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-1|ERG;nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-3|ERG 9.38312468134398 0.24977752951804 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99117.2 NaN 6945 2482 9422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9431 47.075 NaN 181430 35 0 32306 0.327 + 20795 PHEISNVF 8 46 471.7376723698398 941.4607918064796 2 471.7378234863281 MULTI HCD FTMS 0 0 0 9430 50935.3046875 0.22741010513147905 6 -0.17334365844726562 1 Unmodified _PHEISNVF_ tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1 12.531546534597751 0.5015908124873912 1 V{M(Oxidation (M))|F} 2 6 30.969 0 0 3.2895 0 0 677.3142291617515 0 677.3142291617515 0 29.710040265111566 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 3.2895 + + 17 + NaN NaN 115028.9 NaN 6946 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9432 47.079 NaN 119790 35 0 22162 0.261 + 23048 RDRFETIF 8 34 542.2827864770875 1082.5510200209749 2 542.2825927734375 MULTI HCD FTMS 0 0 0 9430 52054.73046875 0.2877171727413098 8 -0.23231124877929688 2 Unmodified _RDRFETIF_ nc|ENSG00000225830|P0DP91|ERCC6 12.531546534597751 0.5015908124873912 1 {I|L}{M(Oxidation (M))|F} 2 6 30.217 0 0 2.7912 0 0 804.386703754831 0 804.386703754831 0 23.226825097560422 0 0 0 0.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.7912 + + 7 NaN NaN 103454.8 NaN 6947 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9433 47.083 NaN 139040 35 0 15075 0.261 + 35431 YYEKLHTYF 9 41 632.3058851267946 1262.597217320389 2 632.3055419921875 MULTI HCD FTMS 0 0 0 9430 66339.0546875 0.38786178024896534 -3 0.08711624145507812 3 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 91.08480475639789 0.0044975408722150376 1 YYEK{I|L}HTY{M(Oxidation (M))|F} 9 0 + 81.238 0 0 6.4342 6.4342 93.018 0 0 0 9.120768972555595 9.120768972555595 9.120768972555595 36.8348435778082 0 2.0356668758921828 2 0.7742275032520141 0.3807196863200844 + + YYEK{I|L}HTY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[TA]TY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}KEYY 6.4342;3.5168;1.6706 +;-;- + 147 NaN NaN 118534.7 NaN 6948 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9434 47.086 NaN 136260 35 0 13309 0.261 + 34647 YPSEQEKLSL 10 59 597.3058409924669 1192.5971290517336 2 597.3054809570312 MULTI HCD FTMS 0 0 0 9430 81739.984375 0.4801918616231776 -2 0.06417465209960938 4 Unmodified _YPSEQEKLSL_ ENSG00000118707|ENST00000373872|TGIF2;nc|ENSG00000118707|Q9GZN2-2|TGIF2 48.07275321834293 0.08479850339886455 1 YPSE[KP]V{[CA]|SS}S{I|L} 11 5 + 60.038 0 0 5.0342 5.0342 82.515 0 0 0 20.696600508539667 7.324547346893247 7.324547346893247 2.2510686555054136 0 1.4124379954164592 1.5228787452803376 0.6203715150305281 0 YPSE[KP]V{[CA]|SS}S{I|L};YPSE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}EE[KP]V{[CA]|SS}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}EE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L} 5.0342;4.8454;4.2845;1.4727;1.2839 -;+;+;-;- + 138 + NaN NaN 107228.2 NaN 6949 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9435 47.089 NaN 143140 35 0 19695 0.261 + 8659 HFIAEHYMF 9 42 605.7706958354203 1209.5268387376404 2 605.7711181640625 MULTI HCD FTMS 0 0 0 9430 54958.91015625 0.45839099542217643 -8 0.22823715209960938 5 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 57.47134341890925 0.0211188941628804 1 {M(Oxidation (M))|F}H{I|L}{[CP]|[EA]}HY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 54.632 0 0 4.5168 4.5168 82.091 0 0 0 45.67918449261214 9.137342758552691 9.137342758552691 3.2390874094431865 0 2.1549471895720984 0 0.5 0 {M(Oxidation (M))|F}H{I|L}{[CP]|[EA]}HY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}{[CP]|[EA]}HY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5168;4.249 -;+ + 38 + NaN NaN 118156.2 NaN 6950 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9436 47.093 NaN 56087 35 0 12055 0.261 -1 IYADNQVMHF 10 26 627.2846565519511 1252.5547601707021 2 627.2845458984375 MULTI HCD FTMS 0 0 0 9430 53406.79296875 1 0 0 6 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 18.1463463914782 0.3413772152514074 1 [Y{I|L}]AD 4 -1 40.445 0 0 3.229 0 0 0 787.3195894830686 787.3195894830686 33.455612550363796 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]AD 3.229 + + 10 + NaN NaN 104523.8 NaN 6951 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9437 47.096 NaN 22376 35 0 4680.1 0.261 + -1 SGKLFMLFLQ 10 17 600.3304114290544 NaN 0 600.3455810546875 PEAK HCD FTMS 0 0 0 9430 9183.3349609375 0.515446566680516 3 -0.08171844482421875 7 Oxidation (M) _SGKLFM(Oxidation (M))LFLQ_ REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B 1.1933415558491238 0.33916295405077446 1 {I|L} 1 -1 6.9897 0 0 0.58313 0 0 323.19358545400866 759.3529757135374 1082.546561167546 0 0 0 0 0 0 0 0 0 {I|L} 0.58313 + + 1 + NaN NaN 93818.7 NaN 6952 2483 9430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9439 47.101 NaN 3205200 35 0 388900 0.327 + 546 APEEHPVLL 9 110 502.7741653025147 1003.5337776718294 2 502.7743225097656 MULTI HCD FTMS 0 0 0 9438 2129380 0.020421695574816573 28 -0.8313102722167969 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 131.29775728308752 0.0005262696486345744 1 APEEHPV{I|L}{I|L} 9 0 + 81.468 0 0 8.1181 8.1181 95.349 0 0 0 33.03660125269677 11.39506772603255 11.39506772603255 27.352071339160716 0 2.4916440611282624 1.5228787452803376 0.9163865622122673 0 + + APEEHPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};{[YC]|[HE]}E[VP]PA{I|L}{I|L};[PA]E[VP]{[YC]|[HE]}{I|L}{I|L};[PA]E[VP]PNPA{I|L};{[YC]|[HE]}[VP]EPA{I|L}{I|L};{[YC]|[HE]}E[VP]P{I|L}A{I|L};[VP]{I|L}{[YC]|[HE]}EPA{I|L};[EP]E[HV]PA{I|L}{I|L} 8.1181;5.3926;4.8762;4.7363;4.4732;4.3742;4.3626;3.9819;3.9693;3.9028 +;-;-;-;-;-;-;-;-;- + 1790 + NaN NaN 566861.2 NaN 6953 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9440 47.106 NaN 562870 35 0 38493 0.261 + 1336 AYPHNLMTF 9 83 555.2577602370291 1108.500967540858 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9438 246889.8125 0.15051526476142285 10 -0.2820549011230469 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 111.28704002717404 0.0027322905094575235 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 77.858 0 0 7.0237 7.0237 89.82 0 0 0 17.51948427510076 47.248548861877424 17.51948427510076 9.208187539523749 0 2.3979400086720375 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YT]M{[NV]|[RG]}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[NV]|[RG]}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7.0237;6.193;5.4398;4.567;4.5463;4.5015;4.4809;3.8916;3.1444;2.8124 -;-;-;-;-;-;-;-;-;- 1517 NaN NaN 181646 NaN 6954 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9441 47.109 NaN 1036500 35 0 70053 0.261 + 8329 GYFGNPQKF 9 85 529.2586364347618 1056.5027199363235 2 529.2587890625 MULTI HCD FTMS 0 0 0 9438 392297.09375 0.6900037321246892 -2 0.05371856689453125 3 Unmodified _GYFGNPQKF_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3 104.79918948944588 0.003791450360204016 1 [YG]{M(Oxidation (M))|F}GNPQK{M(Oxidation (M))|F} 9 0 + 89.179 0 0 8.4409 8.4409 92.166 0 0 0 25.642492736872597 74.57457289475158 25.642492736872597 9.208187539523749 0 2.3494850021680094 2 0 0.7302046884880937 + + [YG]{M(Oxidation (M))|F}GNPQK{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GNP[AG]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGGPQK{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GNPQ{M(Oxidation (M))|F}K;[YG]{M(Oxidation (M))|F}GGGP[AG]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGGPQ{M(Oxidation (M))|F}K;[YG]{M(Oxidation (M))|F}GNP[AG]{M(Oxidation (M))|F}K;{[CT]|[{M(Oxidation (M))|F}G]}YGNPQK{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GN{M(Oxidation (M))|F}[QP]K;[YG]{[WS]|[C(Carbamidomethyl (C)){I|L}]}AAQK{M(Oxidation (M))|F} 8.4409;7.5694;7.5694;6.7616;6.3416;5.89;5.89;5.5048;4.8843;4.8709 +;-;-;-;-;-;-;-;-;- + 1814 NaN NaN 243288.1 NaN 6955 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9442 47.112 NaN 321540 35 0 61411 0.261 + 10503 IPEKFQHIL 9 49 562.8266746428853 1123.6387963525706 2 562.8268432617188 MULTI HCD FTMS 0 0 0 9438 156100.625 0.31080807224168117 4 -0.11511993408203125 4 Unmodified _IPEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 61.60191391372663 0.015340508911304802 1 {I|L}PEK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L} 9 0 + 77.598 0 0 6.9059 6.9059 90.934 0 0 0 61.39969987625378 11.39506772603255 11.39506772603255 11.42159058960253 0 2.524227503252014 1.3010299956639813 0.8252574989159953 0 + + {I|L}PEK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L};[{I|L}P]EK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L};[EP]{I|L}K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L} 6.9059;5.8894;4.7077 +;+;- + 205 + NaN NaN 130549 NaN 6956 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9443 47.116 NaN 505610 35 0 30747 0.261 + 34727 YPVKYTQTF 9 81 573.7950851798009 1145.5756174264018 2 573.7951049804688 MULTI HCD FTMS 0 0 0 9438 205376.796875 0.7426072132608691 -2 0.05371856689453125 5 Unmodified _YPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 163.03601447609117 7.615514112917802E-09 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYTQT{M(Oxidation (M))|F} 9 0 + 92.3 0 0 8.0571 8.0571 91.523 0 0 0 25.87128018967597 54.341445585788776 25.87128018967597 9.208187539523749 0 2.274227503252014 1.5228787452803376 1.579689690656103 0.5501648626366046 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYTQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYT[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYT{[NV]|[RG]}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VK[HM][KP]{M(Oxidation (M))|F};Y[{I|L}T]KY[NP]T{M(Oxidation (M))|F};YYVV[YV]V{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]Q[K{I|L}]{[{M(Oxidation (M))|F}D]|MM}T{M(Oxidation (M))|F};Y[{I|L}T]KYT[NP]{M(Oxidation (M))|F};Y{[QV]|[N{I|L}]|[RA]|[KV]}[HM]KV{[QN]|[E{I|L}]|[KN]};[WP][DP]YKV{[QN]|[E{I|L}]|[KN]} 8.0571;7.2533;4.1615;3.6781;2.9707;2.6782;2.4155;1.8856;1.8288;1.7793 +;-;-;-;-;-;-;-;-;- + 821 NaN NaN 163598.1 NaN 6957 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9444 47.119 NaN 254230 35 0 21696 0.261 + 6679 FPNKQGYVL 9 64 533.2898697829738 1064.5651866327476 2 533.2900390625 MULTI HCD FTMS 0 0 0 9438 103659.734375 0.10686649051417002 -20 0.4424858093261719 6 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 37.97399986684836 0.07464525285885698 1 {M(Oxidation (M))|F}QGYV{I|L} 6 3 46.389 0 0 4.3575 0 0 339.1903248517594 0 339.1903248517594 0 28.429862658764264 0 0 0 0.5 0 0 0.3252574989159953 {M(Oxidation (M))|F}QGYV{I|L} 4.3575 - 87 NaN NaN 120894.3 NaN 6958 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9445 47.122 NaN 172120 35 0 20881 0.261 + 20586 PEKFQHIL 8 64 506.2841871945345 1010.5538214558691 2 506.2838439941406 MULTI HCD FTMS 0 0 0 9438 34468.90234375 0.4535022460699301 5 -0.14752197265625 7 Unmodified _PEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 24.020572477871973 0.4170589785259073 1 [EP]K{I|L} 4 4 30.138 0 0 2.9823 0 0 0 540.2683809869749 540.2683809869749 10.674100046527357 0 0 0 0 0.7742275032520141 1.5228787452803376 0 0 [EP]K{I|L} 2.9823 - 103 + NaN NaN 114696.7 NaN 6959 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9446 47.126 NaN 208840 35 0 30689 0.262 + -1 RSIMGPVVIIF 11 52 416.57783557959544 1246.7116773389864 3 416.5777587890625 MULTI HCD FTMS 0 0 0 9438 26169.517578125 0.6845134898088217 9 -0.2623558044433594 8 Oxidation (M) _RSIM(Oxidation (M))GPVVIIF_ REV__ENSG00000198743|ENST00000381151|SLC5A3 1.214830529360525 0.41359283248740725 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1714 0 0 1081.6326195770707 0 1081.6326195770707 0 11.839883926472972 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1714 + + 5 + NaN NaN 130502.2 NaN 6960 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9447 47.129 NaN 133010 35 0 16650 0.261 + 3504 EIAEASHIF 9 55 508.7575664496777 1015.5005799661554 2 508.757568359375 MULTI HCD FTMS 0 0 0 9438 16559.26953125 0.9414064469164145 1 -0.03293609619140625 9 Unmodified _EIAEASHIF_ REV__ENST00000567007.5_1_16:67226100-67226544:+|nuORF 7.289230182591677 0.29575926068275815 1 E{I|L} 2 -1 17.959 0 0 1.7685 0 0 755.3632679669937 0 755.3632679669937 0 3.3547064036788754 0 0 0 0 0 0 0 E{I|L} 1.7685 + + 18 NaN NaN 117328.2 NaN 6961 2484 9438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9449 47.134 NaN 231480 35 0 57361 0.327 + 27551 TADGAHFEL 9 41 480.7245288847812 959.4345048363624 2 480.7243957519531 MULTI HCD FTMS 0 0 0 9448 146846.1875 0.5043458997702415 4 -0.11458587646484375 1 Unmodified _TADGAHFEL_ ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF 49.93300154707207 0.03166451819912738 1 [TA]DQH{M(Oxidation (M))|F}E{I|L} 8 2 + 58.594 0 0 6.1071 6.1071 92.498 0 0 0 2.1349281074461857 43.10911268361153 2.1349281074461857 38.24153794511119 0 1.3182503180159344 1.6989700043360187 0.3807196863200844 0 [TA]DQH{M(Oxidation (M))|F}E{I|L};TW{[QS]|[NT]}{[VA]|[{I|L}G]}D[PG];[{M(Oxidation (M))|F}E][KG][NP]D[PG];[{M(Oxidation (M))|F}E]{[QG]|[NA]}[HT]E{I|L} 6.1071;2.1213;0.90134;0.38046 -;-;-;- 94 NaN NaN 130173 NaN 6962 2485 9448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9450 47.138 NaN 247140 35 0 36696 0.261 + 20937 PLAQEEDSEP 10 50 557.7474900055759 1113.4804270779516 2 557.7478637695312 MULTI HCD FTMS 0 0 0 9448 124688.6875 0.7367772819196946 2 -0.05258941650390625 2 Unmodified _PLAQEEDSEP_ ENST00000448979.3_1_12:53900562-53901037:-|nuORF;nc|ENSG00000139574|O15130-2|NPFF 17.11289562659939 0.35104376501799556 1 {I|L}PAAGV 6 9 83.448 0 0 7.4944 0 0 0 602.1573792209732 602.1573792209732 58.672137691284405 0 0 0 0 2.2302046884880937 1.6989700043360187 0 0 {I|L}PAAGV 7.4944 - 370 + NaN NaN 124621.4 NaN 6963 2485 9448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9451 47.142 NaN 266120 35 0 25548 0.261 + 18187 MPDLENRVL 9 56 551.7812495737627 1101.5479462143253 2 551.7816772460938 MULTI HCD FTMS 0 0 0 9448 127718.4765625 0.9667772221878568 -5 0.1458740234375 3 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 43.981846655682396 0.04706587046877104 1 NE{I|L}DPE 6 8 47.211 0 0 4.2859 0 0 386.2631092755875 0 386.2631092755875 0 21.293709283484077 0 0 0 1.274227503252014 0 0.3807196863200844 0 NE{I|L}DPE 4.2859 - 64 NaN NaN 131780.7 NaN 6964 2485 9448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9452 47.145 NaN 204930 35 0 14033 0.261 + 28034 TGAFQQADF 9 56 492.7246507895606 983.4347486459212 2 492.72467041015625 MULTI HCD FTMS 0 0 0 9448 79349.65625 0.6187804657091311 3 -0.082183837890625 4 Unmodified _TGAFQQADF_ REV__ENSG00000176919|ENST00000371634|C8G 24.020572477871973 0.15282392193088168 1 A{M(Oxidation (M))|F} 2 -1 24.534 0 0 2.4947 0 0 747.3189629787322 0 747.3189629787322 0 0.37733420443657906 0 0 0 0.7059771852360797 0 0 0 A{M(Oxidation (M))|F} 2.4947 + + 30 + NaN NaN 116701.5 NaN 6965 2485 9448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9453 47.149 NaN 579290 35 0 87420 0.261 + 19211 NINKLQELD 9 96 543.7953072662642 NaN 0 543.78271484375 PEAK HCD FTMS 0 0 0 9448 18990.142578125 0.5584228701891146 -8 0.24786376953125 5 Unmodified _NINKLQELD_ ENSG00000196664|ENST00000380659|TLR7 15.847184025352803 0.21527282152051216 1 NTV[{I|L}P]ST 7 7 20.019 0 0 1.8441 0 0 208.11252541305436 162.05568872623283 370.1682141392872 0 0 0 0 0 0 0 0.8829131673969606 0 NTV[{I|L}P]ST 1.8441 - 395 + NaN NaN 166881.2 NaN 6966 2485 9448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9454 47.152 NaN 193620 35 0 12195 0.261 + 25478 SFDSGSVRL 9 59 484.24591973427187 966.4772865353438 2 484.24554443359375 MULTI HCD FTMS 0 0 0 9448 36609.8515625 0.28770764519392356 5 -0.14717483520507812 6 Unmodified _SFDSGSVRL_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 24.990960013464015 0.14443998892849796 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DS 4 5 38.148 0 0 3.9472 0 0 0 527.2932709926281 527.2932709926281 10.72559982972642 0 0 0 0 1.4247425010840047 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DS 3.9472 + + 169 NaN NaN 111996.5 NaN 6967 2485 9448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9456 47.157 NaN 286470 35 0 42301 0.327 + 25044 SAAGKDWAF 9 57 476.7289903481078 951.4434277630156 2 476.7296142578125 MULTI HCD FTMS 0 0 0 9455 185915.21875 0.5535154490255378 4 -0.12421417236328125 1 Unmodified _SAAGKDWAF_ ENSG00000160256|ENST00000291634|SLX9;nc|ENSG00000160256|Q9NSI2-2|SLX9 23.789781309258295 0.1548179064208189 1 {[SA]|[TG]}[YT]{[HG]|PP}VA{M(Oxidation (M))|F} 9 5 + 31.857 0 0 3.3483 3.3483 82.728 0 0 0 11.39969987625378 4.277486376553913 4.277486376553913 7.793774815719203 0 1.3494850021680094 0 0 0 {[SA]|[TG]}[YT]{[HG]|PP}VA{M(Oxidation (M))|F};{[SA]|[TG]}A[QT]AWA{M(Oxidation (M))|F};{[SA]|[TG]}A[KG]DWA{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[YG]{[HG]|PP}VA{M(Oxidation (M))|F};{[SA]|[TG]}{[WN]|[YH]}AS{[CT]|[{M(Oxidation (M))|F}G]}{I|L};[QT][QT]AWA{M(Oxidation (M))|F};[QT][KG]DWA{M(Oxidation (M))|F};{[SA]|[TG]}[KQ]DWA{M(Oxidation (M))|F};{[SA]|[TG]}{[WN]|[YH]}A[YQ]{I|L};{[SA]|[TG]}{[WN]|[YH]}A[YG]A{I|L} 3.3483;2.5292;2.4588;2.1672;1.7154;1.6392;1.5688;1.5688;0.50902;0.45526 -;-;+;-;-;-;-;-;-;- + 276 + NaN NaN 135455.3 NaN 6968 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9457 47.161 NaN 374180 35 0 68157 0.261 -1 LPDDPRQMTL 10 54 601.2976210883207 1200.5806892434414 2 601.7794799804688 MULTI HCD FTMS 0 0 0 9455 9857.5126953125 0.10386207153431697 20 -0.5911979675292969 2 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 10.799506525563784 0.4100970765206026 1 [VP]ED{[C(Carbamidomethyl (C))G]|[NC]}ANVE 10 -1 39.843 0 0 3.3186 0 0 0 127.10949584937056 127.10949584937056 23.389399919613965 0 0 0 0 0.5 0 0.4247425010840047 0.7742275032520141 [VP]ED{[C(Carbamidomethyl (C))G]|[NC]}ANVE 3.3186 - 760 NaN NaN 146072.8 NaN 6969 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9458 47.165 NaN 393940 35 0 122220 0.261 + 21995 QFCMFEYPL 9 48 589.2555593946923 1176.4965658561846 2 589.2561645507812 MULTI HCD FTMS 0 0 0 9455 148324.484375 0.4993205644117772 -2 0.055896759033203125 3 Unmodified _QFCMFEYPL_ ENST00000561721.6_1_17:75089357-75138808:+|nuORF 19.256988751693697 0.19398022840297344 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 7 52.167 0 0 4.4341 0 0 656.2421742169937 0 656.2421742169937 0 48.187587626244124 0 0 0 1.2614393726401687 0 0.7614393726401688 0 E{M(Oxidation (M))|F}{I|L}{I|L} 4.4341 - 36 NaN NaN 150716 NaN 6970 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9459 47.168 NaN 283380 35 0 49884 0.264 + 23697 RQNLRKYFF 9 49 424.57175045416244 1270.6934219626874 3 424.57183837890625 MULTI HCD FTMS 0 0 0 9455 71628.703125 0.09823075920908614 54 -1.5771331787109375 4 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F}E 2 -1 18.583 0 0 1.4625 0 0 976.5554119490901 0 976.5554119490901 0 0.8804562952784067 0 0 0 0 0 0 0 {M(Oxidation (M))|F}E 1.4625 - 5 NaN NaN 141862.2 NaN 6971 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9460 47.172 NaN 286230 35 0 84168 0.261 -1 KYMPNVKVAVF 11 51 437.9089275523948 1310.7049532573844 3 437.9092102050781 MULTI HCD FTMS 0 0 0 9455 96589.3359375 0.6740011526796859 2 -0.059223175048828125 5 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 10.315234532428624 0.3672054350828177 1 HV{M(Oxidation (M))|F} 3 -1 25.802 0 0 1.9686 0 0 909.5026655150001 0 909.5026655150001 0 11.197887582883936 0 0 0 0.5 0 0 0 HV{M(Oxidation (M))|F} 1.9686 - 16 + NaN NaN 118971.4 NaN 6972 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9461 47.175 NaN 322320 35 0 30745 0.261 + 21712 QADIEVRAL 9 76 507.7823178101507 1013.5500826871014 2 507.78253173828125 MULTI HCD FTMS 0 0 0 9455 128325.4453125 0.7479224978382831 -1 0.022960662841796875 6 Unmodified _QADIEVRAL_ ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3 74.19965305603844 0.007729275404663812 1 [QA]D{I|L}EV{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 9 0 + 45.727 0 0 4.5116 4.5116 90.08 0 0 0 6.1263864068275495 24.87430030843477 6.1263864068275495 45.72691329240044 0 2.3935078169319297 0 1.4802046884880937 1.610924374808178 + + [QA]D{I|L}EV{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4.5116 + + 151 NaN NaN 150114.7 NaN 6973 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9462 47.178 NaN 90111 35 0 14340 0.261 + 24856 RYQDAIRVF 9 35 584.3170272691219 1166.6195016050438 2 584.3170166015625 MULTI HCD FTMS 0 0 0 9455 36463.32421875 0.3259521446694215 4 -0.12421417236328125 7 Unmodified _RYQDAIRVF_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 22.736283301280096 0.1639198954644489 1 YQ{M(Oxidation (M))|F}E[K{I|L}] 6 6 19.385 0 0 1.6617 0 0 340.22224623847814 0 340.22224623847814 0 10.317431287605533 0 0 0 0 0 0 0 YQ{M(Oxidation (M))|F}E[K{I|L}] 1.6617 - 54 NaN NaN 87683 NaN 6974 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9463 47.182 NaN 201410 35 0 32622 0.261 -1 MPANGETVTL 10 62 524.7523727446489 1047.4901925560978 2 524.7525634765625 MULTI HCD FTMS 0 0 0 9455 50245.49609375 0.643480885293753 -2 0.055896759033203125 8 Oxidation (M) _M(Oxidation (M))PANGETVTL_ ENSG00000127054|ENST00000435064|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000497304.6_1_1:1247871-1248066:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 36.506200033944 0.17572556831573002 1 TVT{I|L} 4 -1 41.855 0 0 3.9957 0 0 615.2316151349625 0 615.2316151349625 0 36.37009080640347 0 0 0 0.8807196863200843 0 0.3494850021680094 0 TVT{I|L} 3.9957 + + 82 NaN NaN 114843.9 NaN 6975 2486 9455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9465 47.187 NaN 1256200 35 0 249220 0.327 + 15238 LPAAGVGDMVM 11 74 546.7566939524986 1091.4988349717971 2 546.7569580078125 MULTI HCD FTMS 0 0 0 9464 806075.5 0.5601922196692969 4 -0.12096405029296875 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 164.5152109175784 1.8457817257505332E-08 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 110.83 0 0 10.154 10.154 95.308 0 0 0 14.559319556497229 5.752574989159939 5.752574989159939 11.575773191777927 0 3.7302046884880937 1.154901959985743 0.805462187404089 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAGVG[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVG[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F} 10.154;9.093;8.8197;8.2692;7.9945;7.7591;7.1549;7.017;6.6607;5.9564 +;-;-;-;-;-;-;-;-;- + 2127 NaN NaN 296385 NaN 6976 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9466 47.191 NaN 760050 35 0 168360 0.261 + 23542 RPAQVEPLL 9 69 511.8031671489324 1021.5917813646648 2 511.80328369140625 MULTI HCD FTMS 0 0 0 9464 390459.1875 0.8846920314803721 2 -0.0619964599609375 2 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 59.368380827593164 0.01846506874148156 1 [RP]AQVEP{I|L}{I|L} 9 0 + 76.705 0 0 7.5084 7.5084 85.953 0 0 0 0.44022814763920337 9.643331241078172 0.44022814763920337 0.44022814763920337 0 2.5228787452803374 0 0.6861818737241735 0 + + [RP]AQVEP{I|L}{I|L};[{I|L}P]NAREP{I|L}{I|L};[RP]A[AG]VEP{I|L}{I|L};[PA]RQVEP{I|L}{I|L};[PA]QRVEP{I|L}{I|L};[{I|L}P]NAERP{I|L}{I|L};[{I|L}P]D[QA]RP{I|L}{I|L};[PA]QVREP{I|L}{I|L};[PA]R[AG]VEP{I|L}{I|L};[PA][AG]RVEP{I|L}{I|L} 7.5084;7.4653;6.607;6.4515;6.296;6.2141;6.068;5.6286;5.5501;5.3946 +;-;-;-;-;-;-;-;-;- + 493 NaN NaN 202436.8 NaN 6977 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9467 47.195 NaN 326510 35 0 43516 0.261 + 34209 YPDPYGGEKL 10 58 569.7743913034163 1137.5342296736326 2 569.7750244140625 MULTI HCD FTMS 0 0 0 9464 185431.8125 0.18161030045398457 -9 0.2609405517578125 3 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 59.05245873256422 0.044867740978679724 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L} 9 2 + 72.828 0 0 6.4022 6.4022 88.643 0 0 0 3.829628067253168 61.541068762089 3.829628067253168 9.208187539523749 0 2.25 1.6989700043360187 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGEK{I|L};[DP]YPYNEK{I|L};Y[KP]NYPDE{I|L};[DP]YPYGGEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NYPDE{I|L};Y[KP]GGYPDE{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGYPDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{[NV]|[RG]}{[{M(Oxidation (M))|F}D]|MM}{I|L} 6.4022;5.5927;4.8886;4.1691;4.0791;4.0569;3.3597;3.2474;2.7573 -;+;-;-;-;-;-;-;- + 361 NaN NaN 132437.9 NaN 6978 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9468 47.198 NaN 194130 35 0 32536 0.261 + 24729 RYLVISEKL 9 54 560.8397750929485 1119.6649972526968 2 560.8397216796875 MULTI HCD FTMS 0 0 0 9464 86718.6015625 0.04470832992851295 19 -0.5615692138671875 4 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 28.494509381512117 0.11816142465008336 1 {I|L}K{M(Oxidation (M))|F}[KQ]SEK{I|L} 9 5 + 56.806 0 0 5.0735 5.0735 82.952 0 0 0 35.8366748685809 2.508943624335558 2.508943624335558 3.0546218740408904 0 1.305462187404089 0 1.5669015600442577 0 {I|L}K{M(Oxidation (M))|F}[KQ]SEK{I|L};{I|L}K{M(Oxidation (M))|F}S[KQ]EK{I|L} 5.0735;4.8006 -;- 118 + NaN NaN 111877.7 NaN 6979 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9469 47.201 NaN 174710 35 0 13370 0.261 -1 ADKMDMSL 8 54 492.70412209824383 983.3936912632877 2 492.70416259765625 MULTI HCD FTMS 0 0 0 9464 87851.0859375 0.9250588067474624 -2 0.05258941650390625 5 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 24.990960013464015 0.4099192402711616 1 {M(Oxidation (M))|F}S{I|L} 3 -1 34.085 0 0 3.4661 0 0 618.23344618965 0 618.23344618965 0 18.51194858300586 0 0 0 0.5 0 0.28872548999643577 0 {M(Oxidation (M))|F}S{I|L} 3.4661 + + 26 NaN NaN 117839.5 NaN 6980 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9470 47.205 NaN 133560 35 0 9261.7 0.261 + 1977 DAPLRDPAL 9 48 484.26390700804996 966.5132610828999 2 484.2638244628906 MULTI HCD FTMS 0 0 0 9464 29077.458984375 0.5528601848885828 2 -0.0619964599609375 6 Unmodified _DAPLRDPAL_ ENSG00000030582|ENST00000053867|GRN;ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;nc|ENSG00000030582|P28799-3|GRN 16.149105407346934 0.22083165093524068 1 DPA{I|L} 4 5 37.18 0 0 3.8469 0 0 552.3018665998062 0 552.3018665998062 0 11.238350322034236 0 0 0 0.8252574989159953 0 0 0 + DPA{I|L} 3.8469 + + 28 NaN NaN 100102.4 NaN 6981 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9471 47.208 NaN 272670 35 0 30118 0.261 + 3580 EKHELLKKRYD 11 67 486.9413769155127 1457.8023013467382 3 486.9400329589844 MULTI HCD FTMS 0 0 0 9464 27959.6328125 0.2647896233730105 -2 0.05258941650390625 7 Unmodified _EKHELLKKRYD_ REV__ENSG00000100519|ENST00000445930|PSMC6;REV__ENST00000458604.6_1_14:53173937-53175208:+|nuORF;REV__ENST00000554952.5_1_14:53173937-53176322:+|nuORF 1.214830529360525 0.41359283248740725 1 [QT]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}PNK{I|L}{I|L}[RN] 12 -1 + 33.822 0 0 2.3201 2.3201 82.756 0 0 0 6.757593903009607 5.942124970647029 5.942124970647029 9.09823369650912 0 0 0 0 0 [QT]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}PNK{I|L}{I|L}[RN];[QT]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}PGGK{I|L}{I|L}[RN] 2.3201;1.696 -;- 126 + NaN NaN 123359.9 NaN 6982 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9472 47.211 NaN 62626 35 0 8691.6 0.261 + 20554 PEEEIWEELSV 11 42 453.8806134964455 1358.6200110895365 3 454.2169494628906 MULTI HCD FTMS 0 0 0 9464 5021.81640625 0.14288556406612868 2 -0.0619964599609375 8 Unmodified _PEEEIWEELSV_ ENSG00000198681|ENST00000356661|MAGEA1 1.214830529360525 0.41359283248740725 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 109170.7 NaN 6983 2487 9464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9474 47.216 NaN 1753400 35 0 136920 0.327 + 35426 YYEKLHTYF 9 91 421.8729716370388 1262.5970855113164 3 421.8731384277344 MULTI HCD FTMS 0 0 0 9473 822898.0625 0.7935062440609988 2 -0.06499099731445312 1 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 67.08073823543168 0.010032840856489532 1 YYEK{I|L}HTY{M(Oxidation (M))|F} 9 0 + 86.358 0 0 6.8397 6.8397 94.534 0 0 0 63.71645960868548 16.47817481888636 16.47817481888636 57.366166095917556 0 1.6861818737241734 2 0.4247425010840047 0 + + YYEK{I|L}HTY{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}[QP]G[Q{I|L}]TY{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[QP]G[Q{I|L}]TY{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[YQ]G[Q{I|L}]TY{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{[QG]|[NA]}Y[Q{I|L}]TY{M(Oxidation (M))|F};[NP]{[MS]|[{M(Oxidation (M))|F}A]}Y[Q{I|L}]TY{M(Oxidation (M))|F} 6.8397;2.2962;1.8194;1.4551;1.1536;0.52325 +;-;-;-;-;- + 784 + NaN NaN 347392.3 NaN 6984 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9475 47.221 NaN 521610 35 0 30729 0.261 + 34231 YPDRIMNTF 9 80 586.7738327790339 1171.5331126248677 2 586.774169921875 MULTI HCD FTMS 0 0 0 9473 301087.65625 0.058713147750449335 23 -0.6759223937988281 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 107.5634045930896 0.0033401844687379516 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 77.092 0 0 6.5805 6.5805 85.216 0 0 0 2.35354666808 2.35354666808 2.35354666808 2.35354666808 0 1.8539171939081172 1.3010299956639813 0.5 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 6.5805;6.3796;6.0894;5.7945;5.4101;5.3328;5.3208;5.3034;4.6241;4.5348 +;+;-;-;-;-;-;-;-;- + 1908 NaN NaN 161201.1 NaN 6985 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9476 47.224 NaN 270560 35 0 23966 0.261 + 32327 VYVERAEVL 9 65 539.3006616011938 1076.5867702691876 2 539.30078125 MULTI HCD FTMS 0 0 0 9473 91800.578125 0.11654810383983433 8 -0.23960113525390625 3 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 27.223235318498237 0.1251536255799991 1 EMV{I|L} 4 6 35.433 0 0 3.2912 0 0 586.3448353498062 0 586.3448353498062 0 11.251837901751003 0 0 0 0.3494850021680094 0 0 0 EMV{I|L} 3.2912 - 113 NaN NaN 139871.2 NaN 6986 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9477 47.228 NaN 64621 35 0 5809.3 0.261 + 19884 NYDKVEKLF 9 36 578.3057497421522 1154.5969465511043 2 578.3048095703125 MULTI HCD FTMS 0 0 0 9473 38500.515625 1 0 0 4 Unmodified _NYDKVEKLF_ ENSG00000176102|ENST00000323959|CSTF3 28.494509381512117 0.11816142465008336 1 [YN][WR]EK{I|L} 7 4 40.507 0 0 3.5083 0 0 0 162.05768726608736 162.05768726608736 25.506528973229052 0 0 0 0 0.8807196863200843 2 0.5 0 [YN][WR]EK{I|L} 3.5083 - 24 NaN NaN 103810.2 NaN 6987 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9478 47.231 NaN 144760 35 0 17443 0.262 + 28479 TPPAHSSVF 9 49 471.7376723698398 941.4607918064796 2 471.7348327636719 MULTI HCD FTMS 0 0 0 9473 22202.197265625 0.0991258233420304 11 -0.3290596008300781 5 Unmodified _TPPAHSSVF_ ENST00000377320.3_1_1:9713839-9714497:-|nuORF;nc|ENSG00000179840|Q5SR53|PIK3CD-AS1 7.910154910731844 0.2910521888787154 1 V{M(Oxidation (M))|F} 2 7 29.776 0 0 3.1628 0 0 677.310350486525 0 677.310350486525 0 22.78659694992122 0 0 0 0.8807196863200843 0 0 0 + V{M(Oxidation (M))|F} 3.1628 + + 25 NaN NaN 110050.4 NaN 6988 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9479 47.234 NaN 75221 35 0 10641 0.261 + -1 PLHPFMVM 8 38 494.2430866651599 986.4716203971199 2 494.74627685546875 MULTI HCD FTMS 0 0 0 9473 17121.193359375 0.5602325405273095 3 -0.09136962890625 6 Oxidation (M) _PLHPFMVM(Oxidation (M))_ REV__ENSG00000171116|ENST00000370416|HSFX1;REV__ENSG00000268738|ENST00000598963|HSFX2 11.114462752807354 0.5120171699125776 1 V{M(Oxidation (M))|F} 2 -1 23.756 0 0 2.4081 0 0 722.3580799787125 0 722.3580799787125 0 13.298122174395031 0 0 0 0.7302046884880937 0 0 0 V{M(Oxidation (M))|F} 2.4081 + + 57 NaN NaN 106495.6 NaN 6989 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9480 47.238 NaN 34310 35 0 6237.6 0.261 + -1 CCFDCRGCDM 10 22 613.1818467027613 NaN 0 613.62890625 PEAK HCD FTMS 0 0 0 9473 14858.44140625 0.8889818800133262 2 -0.06499099731445312 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))CFDCRGCDM(Oxidation (M))_ REV__ENSG00000141644|ENST00000269468|MBD1;REV__MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant;REV__nc|ENSG00000141644|Q9UIS9-10|MBD1;REV__nc|ENSG00000141644|Q9UIS9-12|MBD1;REV__nc|ENSG00000141644|Q9UIS9-2|MBD1;REV__nc|ENSG00000141644|Q9UIS9-5|MBD1;REV__nc|ENSG00000141644|Q9UIS9-6|MBD1;REV__nc|ENSG00000141644|Q9UIS9-8|MBD1;REV__nc|ENSG00000141644|Q9UIS9-9|MBD1 0 0.34018428902965525 1 K 1 -1 3.9794 0 0 0.32502 0 0 629.82455658736 463.41217981510005 1093.23673640246 0 0 0 0 0 0 0 0 0 K 0.32502 - 1 + NaN NaN 97219.1 NaN 6990 2488 9473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9482 47.248 NaN 2245900 35 0 287810 0.327 + 547 APEEHPVLL 9 89 502.7741653025147 1003.5337776718294 2 502.7742919921875 MULTI HCD FTMS 0 0 0 9481 1321031.25 0.012669273700475917 33 -0.9604148864746094 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 131.29775728308752 0.0005262696486345744 1 APEEHPV{I|L}{I|L} 9 0 + 71.213 0 0 7.0962 7.0962 92.34 0 0 0 16.963950151760656 14.850227980532793 14.850227980532793 15.638954234728708 0 2.3667053245199625 1.154901959985743 0.9163865622122673 0 + + APEEHPV{I|L}{I|L};[VP]HDDPV{I|L}{I|L};[VP]HEEPA{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[VP]HEEP{I|L}A{I|L};[VP]HEE{I|L}PA{I|L};[VP]HDD{I|L}VP{I|L};[VP]{I|L}{[YC]|[HE]}EPA{I|L};[VP]H{[QN]|[E{I|L}]|[KN]}EPA{I|L};[VP]{I|L}AHEEP{I|L} 7.0962;5.5378;4.8825;4.4163;4.1592;4.0504;4.0387;4.0347;3.5593;3.473 +;-;-;-;-;-;-;-;-;- + 1036 + NaN NaN 440457.5 NaN 6991 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9483 47.253 NaN 679560 35 0 97825 0.261 + 26173 SPNYDHVVL 9 85 522.2613349771719 1042.5081170211438 2 522.26171875 MULTI HCD FTMS 0 0 0 9481 248560.625 0.6162010662047732 -2 0.0619964599609375 2 Unmodified _SPNYDHVVL_ ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF 65.47368725323818 0.010552856507075443 1 [PS]NYDHVV{I|L} 9 0 + 56.938 0 0 5.4617 5.4617 89.198 0 0 0 7.879099962974152 30.735520525254202 7.879099962974152 14.577322709550117 0 1.8812033112643842 0 0.5994850021680094 0.7059771852360797 + + [PS]NYDHVV{I|L};SPNYDHVV{I|L};SPGGYDHVV{I|L};[PS]NG{[WS]|[C(Carbamidomethyl (C)){I|L}]}VPS{I|L};[YN][PS]DHVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TQ[YT]PS{I|L};[PS][WK][DN]PS{I|L};[NP]SG{[WS]|[C(Carbamidomethyl (C)){I|L}]}VPS{I|L};VV{[WN]|[YH]}[DN]PS{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TQ{[RE]|[WV]}Y{I|L} 5.4617;4.0634;3.1801;1.5889;1.193;1.0847;0.95381;0.91587;0.38544;0.37029 +;+;-;-;-;-;-;-;-;- + 632 NaN NaN 192733.7 NaN 6992 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9484 47.256 NaN 181630 35 0 19031 0.261 + 34648 YPSEQEKLSL 10 52 597.3058409924669 1192.5971290517336 2 597.3060302734375 MULTI HCD FTMS 0 0 0 9481 126310.234375 0.7420254242811155 4 -0.11483383178710938 3 Unmodified _YPSEQEKLSL_ ENSG00000118707|ENST00000373872|TGIF2;nc|ENSG00000118707|Q9GZN2-2|TGIF2 85.76441949171179 0.0013275063545469994 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L} 10 0 + 78.452 0 0 6.5783 6.5783 90.519 0 0 0 15.444087325889981 46.59765299137284 15.444087325889981 12.034021960761265 0 2.1549471895720984 1.5228787452803376 0.7059771852360797 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KC][WP]{I|L}S{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KC][WP]S{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[KP]C{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[KP]C{M(Oxidation (M))|F}{I|L}{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[KC][WP]{I|L}S{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[KC][WP]S{I|L}{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KP]C{I|L}{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KP]C{M(Oxidation (M))|F}{I|L}{I|L} 6.5783;5.5692;4.2494;3.2403;2.6037;2.4177;2.1531;1.1441;0.50746;0.32144 +;-;-;-;-;-;-;-;-;- + 294 NaN NaN 107745 NaN 6993 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9485 47.26 NaN 165020 35 0 16609 0.261 + 35432 YYEKLHTYF 9 40 632.3058851267946 1262.597217320389 2 632.3062744140625 MULTI HCD FTMS 0 0 0 9481 104019.8359375 0.6081684301649561 3 -0.08857345581054688 4 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 79.42699986076722 0.0060377907040421955 1 YYEK{I|L}HTY{M(Oxidation (M))|F} 9 0 + 93.783 0 0 7.4278 7.4278 95.189 0 0 0 25.642492736872597 56.197887582883936 25.642492736872597 45.12070344032047 0 1.642159058960253 2 1.274227503252014 0.3807196863200844 + + YYEK{I|L}HTY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[TA]TY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}KEYY;[NP]D{M(Oxidation (M))|F}K{I|L}GYY{M(Oxidation (M))|F} 7.4278;3.8542;2.3826;1.9832 +;-;-;- + 186 NaN NaN 119805.1 NaN 6994 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9486 47.263 NaN 439610 35 0 29791 0.261 + 1337 AYPHNLMTF 9 85 555.2577602370291 1108.500967540858 2 555.2578735351562 MULTI HCD FTMS 0 0 0 9481 122935.1484375 0.07494686082097912 15 -0.44292449951171875 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 85.27202061508552 0.004649858145912257 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][YG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 4 + 43.692 0 0 3.9415 3.9415 83.233 0 0 0 4.536655871178041 7.3123109569592515 4.536655871178041 7.754537344402898 0 1.805462187404089 2 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][YG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]{[ES]|[DT]|[{I|L}C]}REN;[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]}[YG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YT]MVN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F};[YT][YV][C(Carbamidomethyl (C))R]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}VN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}WWVET{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3.9415;3.242;2.4796;2.3066;1.3237;1.1828;0.89939;0.86513;0.66921;0.62417 -;-;-;-;-;-;-;-;-;- 881 NaN NaN 152745.8 NaN 6995 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9487 47.266 NaN 198120 35 0 23928 0.261 + 8660 HFIAEHYMF 9 43 605.7706958354203 1209.5268387376404 2 605.7708740234375 MULTI HCD FTMS 0 0 0 9481 107171.875 0.8938791239280847 -2 0.0619964599609375 6 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 67.34385681178166 0.00994769994983633 1 {M(Oxidation (M))|F}H{I|L}{[CP]|[EA]}HY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 59.376 0 0 4.909 4.909 82.721 0 0 0 49.911896655901415 9.137342758552691 9.137342758552691 3.2390874094431865 0 2.1549471895720984 0 0.8494850021680094 0 {M(Oxidation (M))|F}H{I|L}{[CP]|[EA]}HY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}{[CP]|[EA]}HY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.909;4.6412 -;+ + 59 + NaN NaN 130693.1 NaN 6996 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9488 47.27 NaN 345910 35 0 20728 0.263 + 24777 RYPDNLKHLYL 11 74 477.9297349146328 1430.7673753440984 3 478.2652282714844 MULTI HCD FTMS 0 0 0 9481 60030.35546875 0.03696055591890275 38 -1.1070785522460938 7 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 20.410884301107757 0.2792417076485638 1 [{M(Oxidation (M))|F}E][RV]N{I|L}Q[H{I|L}]Y{I|L} 11 5 + 35.59 0 0 2.4875 2.4875 82.278 0 0 0 6.06470026316768 20.98577302467153 6.06470026316768 7.82583442123752 0 0.805462187404089 0 0.3054621874040891 0 [{M(Oxidation (M))|F}E][RV]N{I|L}Q[H{I|L}]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RD]N{I|L}K[H{I|L}]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RD]N{I|L}Q[H{I|L}]Y{I|L};[YR][DP]N{I|L}K[H{I|L}]Y{I|L} 2.4875;1.9405;1.9405;1.7301 -;-;-;+ + 165 NaN NaN 137726.1 NaN 6997 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9489 47.273 NaN 135830 35 0 14274 0.261 + 16770 LYDLVTEKM 9 43 564.2858959271738 1126.5572389211475 2 564.285888671875 MULTI HCD FTMS 0 0 0 9481 45215.0234375 0.772393311387441 -1 0.03240203857421875 8 Oxidation (M) _LYDLVTEKM(Oxidation (M))_ ENSG00000120725|ENST00000394817|SIL1 55.23464941255904 0.024247875903973527 1 [Y{I|L}]D{I|L}VTEK{M(Oxidation (M))|F} 9 0 + 96.635 0 0 8.5779 8.5779 89.999 0 0 0 7.5 7.5 7.5 5.496812376923046 0 2.9802046884880937 2 0 0 + + [Y{I|L}]D{I|L}VTEK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}VTKE{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}VEEK{M(Oxidation (M))|F} 8.5779;8.09;4.8533 +;-;- + 184 + NaN NaN 117440.8 NaN 6998 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9490 47.276 NaN 396430 35 0 83479 0.264 + 2058 DEIDAIGGRRF 11 71 416.88233813146553 1247.6251849945966 3 416.8823547363281 MULTI HCD FTMS 0 0 0 9481 83887.46875 0.769405045804539 -2 0.0619964599609375 9 Unmodified _DEIDAIGGRRF_ ENSG00000100519|ENST00000445930|PSMC6 23.789781309258295 0.24980126723476595 1 DE{I|L}DA 5 6 62.836 0 0 5.0364 0 0 0 701.3896375733696 701.3896375733696 48.856355030044924 0 0 0 0 0.7887254899964358 1.6989700043360187 0 0 + DE{I|L}DA 5.0364 + + 40 + NaN NaN 135372.4 NaN 6999 2489 9481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9492 47.281 NaN 879270 35 0 65344 0.327 + 6680 FPNKQGYVL 9 86 533.2898697829738 1064.5651866327476 2 533.2902221679688 MULTI HCD FTMS 0 0 0 9491 426527 0.43972178661621614 -14 0.4080162048339844 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 74.92900055777586 0.007493270374442853 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 73.369 0 0 6.8919 6.8919 89.572 0 0 0 24.678477052876815 47.38273988191466 24.678477052876815 9.208187539523749 0 1.774227503252014 1.5228787452803376 0.3807196863200844 0.6747425010840047 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQAT{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TP]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQVGY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]VGY{I|L} 6.8919;6.0269;6.0269;6.0029;5.1661;4.1643;3.9699;3.6623;3.2993;3.2993 +;-;-;-;-;-;-;-;-;- + 819 NaN NaN 209424.2 NaN 7000 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9493 47.286 NaN 486990 35 0 33793 0.261 + 8330 GYFGNPQKF 9 76 529.2586364347618 1056.5027199363235 2 529.259033203125 MULTI HCD FTMS 0 0 0 9491 228890.53125 0.4025911058906559 4 -0.1019439697265625 2 Unmodified _GYFGNPQKF_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3 74.42276476219924 0.007657080072768255 1 [YG]{M(Oxidation (M))|F}GN[QP]K{M(Oxidation (M))|F} 9 0 + 77.91 0 0 7.3743 7.3743 90.463 0 0 0 23.493624753846092 62.336740400816026 23.493624753846092 9.208187539523749 0 2.3494850021680094 2 0 0.7302046884880937 + + [YG]{M(Oxidation (M))|F}GN[QP]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGG[QP]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GN[KQ]P{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGG[KQ]P{M(Oxidation (M))|F};[YG]{[QN]|[E{I|L}]|[KN]}[WD]K{M(Oxidation (M))|F};[YG]{[QN]|[E{I|L}]|[KN]}VAG[WY];[YG]{[QN]|[E{I|L}]|[KN]}VQ[WY];[YG]{[QN]|[E{I|L}]|[KN]}VAY{[QD]|[EN]|[WG]|[KD]|[RS]};{M(Oxidation (M))|F}DKKNG[WY];{M(Oxidation (M))|F}DKKGGG[WY] 7.3743;6.5028;5.8042;4.9326;4.6809;3.8181;3.182;2.4442;2.1135;1.2369 +;-;-;-;-;-;-;-;-;- + 574 NaN NaN 162641.8 NaN 7001 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9494 47.289 NaN 166000 35 0 10552 0.261 + 34728 YPVKYTQTF 9 56 573.7950851798009 1145.5756174264018 2 573.7952270507812 MULTI HCD FTMS 0 0 0 9491 97043.9140625 0.35089412086674115 4 -0.1019439697265625 3 Unmodified _YPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 65.47368725323818 0.010552856507075443 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYTQT{M(Oxidation (M))|F} 9 0 + 82.065 0 0 7.1637 7.1637 90.078 0 0 0 25.87128018967597 38.39325909786474 25.87128018967597 9.208187539523749 0 2.1307196863200843 1.5228787452803376 1 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYTQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYT[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VK[HM][KP]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VK[HM]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};Y{[QV]|[N{I|L}]|[RA]|[KV]}[HM]KV{[QN]|[E{I|L}]|[KN]} 7.1637;6.3599;3.8502;3.0814;1.9057 +;-;-;-;- + 136 NaN NaN 116012.4 NaN 7002 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9495 47.293 NaN 268510 35 0 26836 0.261 + 21963 QELQEINRVY 10 59 646.3357551554387 1290.6569573776774 2 646.3353271484375 MULTI HCD FTMS 0 0 0 9491 123161.875 1 0 0 4 Unmodified _QELQEINRVY_ ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 64.68765255105646 0.024373786448983335 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}QE{I|L}NRVY 10 0 + 58.496 0 0 4.5323 4.5323 84.804 0 0 0 24.914967146806845 9.131806016604358 9.131806016604358 9.164539485499262 0 2.06295299324845 0 0 0.3252574989159953 + + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}QE{I|L}NRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[AG]E{I|L}NRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}QE{I|L}GGRVY;[TP][TA]QE{I|L}NRVY;[TP]V[NS]E{I|L}NRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[AG]E{I|L}GGRVY;[TP][TA][AG]E{I|L}NRVY;[TP][TA]QE{I|L}GGRVY;[TP]V[NS]E{I|L}GGRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[TP][TA]NRVY 4.5323;3.8222;3.8222;3.7264;3.339;3.115;3.0191;3.0191;2.6317;2.1174 +;-;-;-;-;-;-;-;-;- + 417 + NaN NaN 120071 NaN 7003 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9496 47.296 NaN 88720 35 0 13265 0.264 + 27552 TADGAHFEL 9 46 480.7245288847812 959.4345048363624 2 480.7243347167969 MULTI HCD FTMS 0 0 0 9491 34151.30859375 0.11729329003550755 9 -0.264068603515625 5 Unmodified _TADGAHFEL_ ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF 19.256988751693697 0.19398022840297344 1 [TA]D 3 6 35.686 0 0 3.7195 0 0 0 669.3001719108343 669.3001719108343 28.696662315049934 0 0 0 0 1 1.5228787452803376 0 0 + [TA]D 3.7195 + + 28 NaN NaN 101551.6 NaN 7004 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9497 47.299 NaN 159570 35 0 20800 0.261 -1 CLCKMKNSM 9 37 557.7474900055759 1113.4804270779516 2 557.7482299804688 MULTI HCD FTMS 0 0 0 9491 24457.509765625 0.14451782217726508 7 -0.20091629028320312 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LCKMKNSM_ IKBKB|p.S466C|1|0.16|ENSG00000104365|chr8:42319302-42319302|C/G|missense_variant 3.944395688203298 0.32111559684428237 1 {I|L}PAA[Y{M(Oxidation (M))|F}]TN 8 -1 38.849 0 0 3.489 0 0 0 233.05654321842033 233.05654321842033 18.404112767164733 0 0 0 0 0 0 0 0.8494850021680094 {I|L}PAA[Y{M(Oxidation (M))|F}]TN 3.489 - 65 + NaN NaN 105608.3 NaN 7005 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9498 47.303 NaN 169470 35 0 57982 0.261 + 32537 WHPHAHVL 8 36 498.7625967483357 995.5106405634714 2 498.7633361816406 MULTI HCD FTMS 0 0 0 9491 71881.296875 1 0 0 7 Unmodified _WHPHAHVL_ REV__ENSG00000011451|ENST00000673675|WIZ;REV__nc|ENSG00000011451|O95785|WIZ 6.354104778181461 0.5325651638111438 1 V{I|L} 2 -1 25.969 0 0 2.6086 0 0 765.346981462366 0 765.346981462366 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.6086 + + 3 NaN NaN 114340.1 NaN 7006 2490 9491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9500 47.308 NaN 714660 35 0 109250 0.327 + 11953 KFLKDTYTA 9 90 543.7953072662642 NaN 0 543.7826538085938 PEAK HCD FTMS 0 0 0 9499 30089.57421875 0.8848120191239651 -2 0.05896759033203125 1 Unmodified _KFLKDTYTA_ REV__ENSG00000095713|ENST00000370597|CRTAC1;REV__nc|ENSG00000095713|Q9NQ79-2|CRTAC1;REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1 21.536976647645854 0.17708171045360593 1 NTV[{I|L}P]ST 7 -1 28.817 0 0 2.6545 0 0 208.1105316327068 162.05620752506096 370.1667391577678 0 0 0 0 0 0 0 1.098136244196333 0 NTV[{I|L}P]ST 2.6545 - 399 + NaN NaN 195259 NaN 7007 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9501 47.312 NaN 547120 35 0 185450 0.261 -1 ESEHSMDTLL 10 60 589.2555593946923 1176.4965658561846 2 589.2562255859375 MULTI HCD FTMS 0 0 0 9499 272487.1875 0.9173027422329629 3 -0.07556533813476562 2 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 14.838274106304384 0.3723198072575719 1 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 57.607 0 0 4.8965 0 0 543.1548329084 0 543.1548329084 0 47.6856908032363 0 0 0 1.6861818737241734 0 0.7302046884880937 0 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 4.8965 - 157 NaN NaN 175522.4 NaN 7008 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9502 47.316 NaN 338000 35 0 58139 0.261 + 9930 IDHFEWLIE 9 67 601.2976210883207 1200.5806892434414 2 601.7791748046875 MULTI HCD FTMS 0 0 0 9499 22863.451171875 0.24089701677623496 25 -0.7289237976074219 3 Unmodified _IDHFEWLIE_ REV__ENSG00000135226|ENST00000335568|UGT2B28;REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 11.640296217721598 0.25978676193971967 1 EVNAM{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]} 9 -1 36.366 0 0 3.029 0 0 130.13215008556796 0 130.13215008556796 0 16.648284622692707 0 0 0 0 0 0.9247425010840047 1.079689690656103 EVNAM{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]} 3.029 - 227 + NaN NaN 135242.2 NaN 7009 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9503 47.319 NaN 397400 35 0 53853 0.263 + 2218 DIVKGDPEL 9 68 493.26341743849616 984.5122819437923 2 493.2635192871094 MULTI HCD FTMS 0 0 0 9499 145808.15625 0.5804988743945777 -2 0.05896759033203125 4 Unmodified _DIVKGDPEL_ ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion 47.594388314883695 0.03493607795751234 1 {NN|[MP]|[D{I|L}]|[EV]}VK[DG][EP]{I|L} 9 0 + 57.214 0 0 5.8114 5.8114 92.699 0 0 0 25.642492736872597 34.53788113901204 25.642492736872597 57.21394354078235 0 1.9247425010840047 2 0.2614393726401688 0 + + {NN|[MP]|[D{I|L}]|[EV]}VK[DG][EP]{I|L} 5.8114 + + 102 NaN NaN 134258.7 NaN 7010 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9504 47.322 NaN 315990 35 0 17218 0.261 -1 MPDLENRVL 9 82 551.7812495737627 1101.5479462143253 2 551.7818603515625 MULTI HCD FTMS 0 0 0 9499 71568.9375 0.5417479166166462 1 -0.029605865478515625 5 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 33.4449034751529 0.0954363425218424 1 {NN|[MP]|[D{I|L}]|[EV]}H{I|L}K{[{M(Oxidation (M))|F}C]|[YS]}N{I|L} 9 -1 + 31.92 0 0 2.8978 2.8978 79.22 0 0 0 0.5034427669487229 7.340832060333682 0.5034427669487229 0.5034427669487229 0 0 1.6989700043360187 0.5 0 {NN|[MP]|[D{I|L}]|[EV]}H{I|L}K{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}E[RN]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}E[RV]N{I|L};{NN|[MP]|[D{I|L}]|[EV]}H{I|L}KA[{M(Oxidation (M))|F}V]C(Carbamidomethyl (C));{NN|[MP]|[D{I|L}]|[EV]}H{I|L}K{[{M(Oxidation (M))|F}C]|[YS]}GG{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}E[RV]GG{I|L};[{M(Oxidation (M))|F}V][EP]E[RN]V{I|L};[{M(Oxidation (M))|F}V][EP]E[RV]N{I|L} 2.8978;2.8521;2.8121;2.2314;2.0619;1.9761;1.1655;1.1255 -;+;-;-;-;-;-;- + 594 NaN NaN 136631.8 NaN 7011 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9505 47.326 NaN 604240 35 0 58487 0.261 + 16709 LYADVGGKQF 10 79 549.2845950611785 1096.554637189157 2 549.284912109375 MULTI HCD FTMS 0 0 0 9499 284593.21875 0.5368475465661735 -2 0.05896759033203125 6 Unmodified _LYADVGGKQF_ ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF 143.90916361153978 3.526631376960201E-07 1 {I|L}YADVGGKQ{M(Oxidation (M))|F} 10 0 + 131.47 0 0 11.989 11.989 92.886 0 0 0 110.58784574193663 16.53212513775344 16.53212513775344 7.769250191953674 0 3.579689690656103 2 0.3807196863200844 1.0994850021680094 + + {I|L}YADVGGKQ{M(Oxidation (M))|F};{I|L}YADVNKQ{M(Oxidation (M))|F};{I|L}YADVGGK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGKQ{M(Oxidation (M))|F};{I|L}YADVNK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVNKQ{M(Oxidation (M))|F};[Y{I|L}]ADVGGG[KA]{M(Oxidation (M))|F};[Y{I|L}]ADVGN[KA]{M(Oxidation (M))|F};[Y{I|L}]ADVNK[AG]{M(Oxidation (M))|F} 11.989;11.28;10.857;10.176;10.144;9.34;9.2289;9.0213;8.4694;8.3891 +;-;-;+;-;-;-;-;-;- + 1831 + NaN NaN 180136.6 NaN 7012 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9506 47.329 NaN 219840 35 0 29193 0.261 + -1 RVSNHRQAM 9 54 557.7795440929671 1113.544535252734 2 557.7792358398438 MULTI HCD FTMS 0 0 0 9499 99425.0703125 0.7085580099724971 -2 0.05896759033203125 7 Oxidation (M) _RVSNHRQAM(Oxidation (M))_ REV__ENSG00000110925|ENST00000228515|CSRNP2 12.531546534597751 0.2520865569484384 1 PG{I|L}VTN{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 49.003 0 0 4.4006 0 0 296.14717299629064 0 296.14717299629064 0 35.90366047130118 0 0 0 1.5 0 0.805462187404089 0.3252574989159953 PG{I|L}VTN{[MS]|[{M(Oxidation (M))|F}A]} 4.4006 - 77 NaN NaN 112791.4 NaN 7013 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9507 47.332 NaN 261020 35 0 22736 0.261 + 27321 SYQRAFNEF 9 57 581.269407084801 1160.5242612364018 2 581.2694702148438 MULTI HCD FTMS 0 0 0 9499 91390.484375 0.4799754571241917 -3 0.09136962890625 8 Unmodified _SYQRAFNEF_ ENSG00000185215|ENST00000560869|TNFAIP2 88.36371040165146 0.004568843997105255 1 GQRA{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 8 2 85.378 0 0 7.3568 0 0 193.0727353067902 0 193.0727353067902 0 74.14085856025294 0 0 0 2.8494850021680094 0 0.8807196863200843 1.0387254899964358 GQRA{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 7.3568 - 558 + NaN NaN 121812 NaN 7014 2491 9499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9509 47.337 NaN 1153400 35 0 170470 0.327 + 34210 YPDPYGGEKL 10 91 569.7743913034163 1137.5342296736326 2 569.7744750976562 MULTI HCD FTMS 0 0 0 9508 699702.25 0.6852822832157186 -4 0.12097549438476562 1 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 104.48436234954404 5.797953196802093E-05 1 YPDPYGGEK{I|L} 10 0 + 97.643 0 0 8.5838 8.5838 89.579 0 0 0 4.479779347832405 4.479779347832405 4.479779347832405 4.479779347832405 0 3.2034021960761265 1.5228787452803376 1.0994850021680094 0 + + YPDPYGGEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGEK{I|L};[DP]YPYGGEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L};[DP]YPYNEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGT[VG]{I|L};[DP]YPYGGT[VG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GEK{I|L};[DP]YG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DGADPYK{I|L} 8.5838;8.1899;8.125;7.4408;7.3758;6.345;6.28;5.8834;5.8185;5.7349 +;+;-;-;-;-;-;-;-;- + 2297 + NaN NaN 271181.8 NaN 7015 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9510 47.342 NaN 267680 35 0 38264 0.261 + 15239 LPAAGVGDMVM 11 72 546.7566939524986 1091.4988349717971 2 546.757080078125 MULTI HCD FTMS 0 0 0 9508 136171.5 0.09463408184555623 9 -0.26120758056640625 2 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 92.4914307365334 0.011439422034398083 1 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 3 82.148 0 0 7.5261 0 0 281.17390639472814 0 281.17390639472814 0 43.7267885026568 0 0 0 3.1549471895720984 0 0.4247425010840047 0 + AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.5261 + + 363 NaN NaN 142258 NaN 7016 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9511 47.345 NaN 169900 35 0 39765 0.261 + 23543 RPAQVEPLL 9 25 511.8031671489324 1021.5917813646648 2 511.803466796875 MULTI HCD FTMS 0 0 0 9508 80312.96875 0.1819709863470869 7 -0.2080841064453125 3 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 21.536976647645854 0.1742816388551942 1 [{I|L}P]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}P{I|L}{I|L} 9 3 + 45.92 0 0 4.495 4.495 88.461 0 0 0 0.1748371339363075 38.47295930833134 0.1748371339363075 19.999999999999996 0 0.8807196863200843 1.6989700043360187 0 0 [{I|L}P]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}P{I|L}{I|L};[RP][DV]{[NV]|[RG]}P{I|L}{I|L} 4.495;2.5372 -;- 25 NaN NaN 116117.4 NaN 7017 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9512 47.349 NaN 266510 35 0 18226 0.261 + 24778 RYPDNLKHLYL 11 70 477.9297349146328 1430.7673753440984 3 478.26348876953125 MULTI HCD FTMS 0 0 0 9508 36403.12890625 0.02241332524280811 41 -1.1954574584960938 4 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 9.530100786504857 0.37404633115274044 1 Y{I|L} 2 9 25.969 0 0 1.815 0 0 1136.6157461409816 0 1136.6157461409816 0 11.989700043360187 0 0 0 0.5 0 0 0 + Y{I|L} 1.815 + + 168 NaN NaN 129686.7 NaN 7018 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9513 47.352 NaN 146850 35 0 20593 0.261 + 24730 RYLVISEKL 9 60 560.8397750929485 1119.6649972526968 2 560.8396606445312 MULTI HCD FTMS 0 0 0 9508 69190.5234375 0.035671617092911515 24 -0.6993179321289062 5 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 19.361941925380144 0.1930734562688509 1 {I|L}K{M(Oxidation (M))|F}S{I|L} 5 6 49.024 0 0 4.3784 0 0 0 528.2954195611936 528.2954195611936 36.0649218306807 0 0 0 0 0.5 0 1.305462187404089 0 {I|L}K{M(Oxidation (M))|F}S{I|L} 4.3784 - 41 + NaN NaN 109373.5 NaN 7019 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9514 47.355 NaN 152470 35 0 12663 0.261 + 21713 QADIEVRAL 9 54 507.7823178101507 1013.5500826871014 2 507.7821960449219 MULTI HCD FTMS 0 0 0 9508 46986.109375 0.27385035136152874 5 -0.14493179321289062 6 Unmodified _QADIEVRAL_ ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3 8.155526934196011 0.2891920862272901 1 S{M(Oxidation (M))|F} 2 9 20.969 0 0 2.0689 0 0 761.4393019027249 0 761.4393019027249 0 0.9589312379110027 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 2.0689 - 35 + NaN NaN 108819.2 NaN 7020 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9515 47.358 NaN 130790 35 0 19559 0.261 + 11683 IYYTGKYQSL 10 39 618.3189251503427 1234.6232973674853 2 618.3179321289062 MULTI HCD FTMS 0 0 0 9508 53583.89453125 0.5779137285737626 -3 0.08857345581054688 7 Unmodified _IYYTGKYQSL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 51.41523569358685 0.07264263333115425 1 {I|L}YYT 4 6 72.652 0 0 5.8845 0 0 0 691.3402130100347 691.3402130100347 61.414412723804546 0 0 0 0 1.5 1.6989700043360187 1.3494850021680094 0 + {I|L}YYT 5.8845 + + 41 + NaN NaN 105740.4 NaN 7021 2492 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9517 47.363 NaN 650010 35 0 48765 0.327 + 35427 YYEKLHTYF 9 76 421.8729716370388 1262.5970855113164 3 421.873046875 MULTI HCD FTMS 0 0 0 9516 306148.125 0.2952132953831899 7 -0.20848846435546875 1 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 33.4449034751529 0.0954363425218424 1 YY{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HK]{I|L}E 8 6 44.385 0 0 3.5154 0 0 0 132.04549585513908 132.04549585513908 20.674100046527357 0 0 0 0 0.4247425010840047 2 0.9247425010840047 0 YY{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HK]{I|L}E 3.5154 - 170 + NaN NaN 182051.2 NaN 7022 2493 9516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9518 47.368 NaN 485280 35 0 30236 0.261 + 34232 YPDRIMNTF 9 75 586.7738327790339 1171.5331126248677 2 586.7740478515625 MULTI HCD FTMS 0 0 0 9516 251225.625 0.04898987697813991 28 -0.8156890869140625 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 107.5634045930896 0.0033401844687379516 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 75.601 0 0 6.4531 6.4531 84.53 0 0 0 1.4176647250152428 1.4176647250152428 1.4176647250152428 1.4176647250152428 0 2.809894379144197 1.5228787452803376 1.350576203518622 0.9258337024346173 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 6.4531;6.3321;5.8144;5.5461;5.4064;5.2967;5.1351;5.0284;4.5108;4.3491 +;+;-;-;-;-;-;-;-;- + 2274 + NaN NaN 159078.6 NaN 7023 2493 9516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9519 47.372 NaN 312070 35 0 20490 0.262 + -1 IMLDWGLCFIM 11 84 477.55539221639316 1429.6443472493795 3 477.5555114746094 MULTI HCD FTMS 0 0 0 9516 59247.4765625 0.8691424222256885 1 -0.0196990966796875 3 Carbamidomethyl (C),2 Oxidation (M) _IM(Oxidation (M))LDWGLC(Carbamidomethyl (C))FIM(Oxidation (M))_ REV__ENST00000508867.5_1_5:74842884-74842941:+|nuORF 4.715918219556657 0.3982382512160552 1 A{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.6059 0 0 1193.5611543556279 0 1193.5611543556279 0 3.9625056246163837 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 1.6059 - 305 + NaN NaN 137280.8 NaN 7024 2493 9516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9520 47.375 NaN 118540 35 0 12158 0.261 + 19549 NSNYLKGF 8 53 471.7376723698398 941.4607918064796 2 471.7383728027344 MULTI HCD FTMS 0 0 0 9516 19853.41796875 0.08863926298649635 16 -0.47832489013671875 4 Unmodified _NSNYLKGF_ REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF 7.289230182591677 0.5311777711368266 1 V{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.5985 0 0 677.3130360334 0 677.3130360334 0 22.870156338638594 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.5985 - 9 NaN NaN 112931 NaN 7025 2493 9516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9521 47.378 NaN 126370 35 0 17236 0.261 + 22636 QVRSCMNEPF 10 54 404.1829951211872 1209.5271559637617 3 404.51812744140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QVRSCMNEPF_ REV__ENSG00000188419|ENST00000357749|CHM 3.2813086475875832 0.45793521633868084 1 {M(Oxidation (M))|F} 1 -1 19.604 0 0 1.6208 0 0 1044.4483881188382 0 1044.4483881188382 0 14.119543704721593 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6208 + + 13 + NaN NaN 107455.1 NaN 7026 2493 9516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9523 47.383 NaN 1778200 35 0 243170 0.327 + 548 APEEHPVLL 9 102 502.7741653025147 1003.5337776718294 2 502.77423095703125 MULTI HCD FTMS 0 0 0 9522 940696.6875 0.009021697104492086 38 -1.1164665222167969 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 125.62461146993168 0.0008703235425492373 1 [PA]EEHPV{I|L}{I|L} 9 0 + 66.029 0 0 6.5796 6.5796 85.158 0 0 0 2.231975075880328 2.231975075880328 2.231975075880328 2.231975075880328 0 2.1237125054200234 0 1 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[VP]DDH{I|L}VP{I|L};{[YC]|[HE]}E[VP]PA{I|L}{I|L};[EP]AEH{I|L}VP{I|L} 6.5796;6.3572;6.1321;5.8348;5.6111;5.137;5.0396;4.5921;4.3601;4.2948 +;+;-;-;-;-;-;-;-;- + 788 NaN NaN 353062.1 NaN 7027 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9524 47.388 NaN 599600 35 0 80398 0.261 + 26174 SPNYDHVVL 9 83 522.2613349771719 1042.5081170211438 2 522.261474609375 MULTI HCD FTMS 0 0 0 9522 250670.609375 0.6214318811077789 3 -0.09897232055664062 2 Unmodified _SPNYDHVVL_ ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF 74.19965305603844 0.007729275404663812 1 [PS]NYDHVV{I|L} 9 0 + 59.803 0 0 5.7364 5.7364 90.534 0 0 0 8.88621229653701 33.15938719897659 8.88621229653701 19.71217778224478 0 1.8226825097560422 0 0.8921590589602532 0.7302046884880937 + + [PS]NYDHVV{I|L};SPNYDHVV{I|L};SPGGYDHVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]{[RE]|[WV]}Y{I|L} 5.7364;3.8456;2.9623;1.4469 +;+;-;- + 413 NaN NaN 178143.1 NaN 7028 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9525 47.391 NaN 262370 35 0 45985 0.262 + 23698 RQNLRKYFF 9 59 424.57175045416244 1270.6934219626874 3 424.5721435546875 MULTI HCD FTMS 0 0 0 9522 62142.02734375 0.0852208438580236 62 -1.8006744384765625 3 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 8.745405648335112 0.2847203663274469 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.5318 0 0 958.545333439053 0 958.545333439053 0 0.8804562952784067 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.5318 + + 6 + NaN NaN 137291.7 NaN 7029 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9526 47.395 NaN 149030 35 0 24110 0.261 + 9901 IAVTTIDNI 9 49 480.2739581820128 958.5333634308256 2 480.2737121582031 MULTI HCD FTMS 0 0 0 9522 38227.86328125 0.5311930985676512 -10 0.2820549011230469 4 Unmodified _IAVTTIDNI_ ENSG00000168002|ENST00000301788|POLR2G;ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENST00000527435.5_1_11:62529161-62533976:+|nuORF 6.2057823575117 0.30397260197431997 1 {I|L}P 2 8 19.464 0 0 2.0306 0 0 0 745.3754376381888 745.3754376381888 4.983105537896009 0 0 0 0 0 0 0 0 {I|L}P 2.0306 - 68 + NaN NaN 106117.2 NaN 7030 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9527 47.398 NaN 60699 35 0 7793.5 0.261 + 28006 TFSEFFGTI 9 35 524.7523727446489 1047.4901925560978 2 524.7522583007812 MULTI HCD FTMS 0 0 0 9522 23115.640625 0.29603594451040693 6 -0.18878936767578125 5 Unmodified _TFSEFFGTI_ REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF 6.723162845929126 0.3000504726104499 1 T{I|L} 2 -1 25.969 0 0 2.4792 0 0 815.34945889308 0 815.34945889308 0 11.989700043360187 0 0 0 0.5 0 0 0 T{I|L} 2.4792 + + 10 NaN NaN 89767.5 NaN 7031 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9528 47.401 NaN 75297 35 0 5936.6 0.261 -1 CMTQLFFFLF 10 33 451.8847946670976 NaN 0 451.8998718261719 PEAK HCD FTMS 0 0 0 9522 5739.04150390625 1 0 0 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))MTQLFFFLF_ ENSG00000197125|ENST00000642064|OR8B8;nc|ENSG00000284609|Q8NGG8|OR8B3 1.7422754331352037 0.33869314273211465 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97838.1 NaN 7032 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9529 47.404 NaN 107440 35 0 20106 0.261 + 23949 RVCGAGRHRRS 11 39 627.8379311429433 1253.6613093526864 2 627.838623046875 MULTI HCD FTMS 0 0 0 9522 35380.98828125 0.6673712814402936 -2 0.04595947265625 7 Unmodified _RVCGAGRHRRS_ REV__ENST00000477931.5_1_20:57464155-57485881:+|nuORF;REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF 17.44264345198275 0.3051040874848456 1 {[NV]|[RG]}VE{I|L}{[NV]|[RG]}A 8 -1 27.867 0 0 2.2228 0 0 0 412.1831080071349 412.1831080071349 19.908037477650637 0 0 0 0 1.3252574989159953 0 0 0 {[NV]|[RG]}VE{I|L}{[NV]|[RG]}A 2.2228 - 33 + NaN NaN 102739 NaN 7033 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9530 47.408 NaN 55838 35 0 12133 0.264 -1 RYQQWMERF 9 30 453.8806134964455 1358.6200110895365 3 454.2156677246094 MULTI HCD FTMS 0 0 0 9522 5694.52734375 0.16202618450747197 8 -0.24515151977539062 8 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 6.630372943996041 0.3007538891620783 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1397 0 0 1193.541227985824 0 1193.541227985824 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1397 + + 5 + NaN NaN 98715.1 NaN 7034 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9531 47.411 NaN 70274 35 0 16786 0.261 + -1 LFFVCLCGCM 10 34 625.2669940443456 NaN 0 625.267822265625 PEAK HCD FTMS 0 0 0 9522 13599.6416015625 0.5487727632183937 3 -0.09897232055664062 9 2 Carbamidomethyl (C) _LFFVC(Carbamidomethyl (C))LC(Carbamidomethyl (C))GCM_ REV__ENST00000261168.8_1_12:14651208-14651295:+|nuORF 1.844237919475145 0.33860587697544825 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103074.2 NaN 7035 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9532 47.414 NaN 22334 35 0 2868.3 0.261 -1 TEWKDCKEST 10 21 642.2831814370873 NaN 0 642.3009643554688 PEAK HCD FTMS 0 0 0 9522 10761.2158203125 0.5857564691373774 2 -0.07266616821289062 10 Carbamidomethyl (C) _TEWKDC(Carbamidomethyl (C))KEST_ ENST00000260197.11_1_11:121391388-121391436:+|nuORF 1.3295316138638542 0.339046394236575 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102627.7 NaN 7036 2494 9522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9534 47.419 NaN 283040 35 0 17440 0.327 + 1338 AYPHNLMTF 9 63 555.2577602370291 1108.500967540858 2 555.2578735351562 MULTI HCD FTMS 0 0 0 9533 123238.1328125 0.07513157388370098 21 -0.6170654296875 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 61.357469665136826 0.01568246967499496 1 T{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4 6 38.633 0 0 3.4851 0 0 594.3011341779312 0 594.3011341779312 0 30.22160958700539 0 0 0 1.2614393726401687 0 0.4247425010840047 0 T{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.4851 - 125 NaN NaN 140539.6 NaN 7037 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9535 47.424 NaN 260250 35 0 19104 0.261 -1 0 61 608.6363917263756 1822.8873457793266 3 608.6367797851562 MULTI HCD FTMS 0 0 0 9533 71294.65625 0.8510213133105516 -2 0.05599212646484375 2 NaN NaN 1 DE{M(Oxidation (M))|F}{I|L}DV[NP] 8 -1 43.889 0 0 2.4076 0 0 875.4509144513687 0 875.4509144513687 0 29.731975075880328 0 0 0 0 0 0.4247425010840047 0 DE{M(Oxidation (M))|F}{I|L}DV[NP] 2.4076 - 187 NaN NaN 131116.3 NaN 7038 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9536 47.428 NaN 108500 35 0 10780 0.261 + 8661 HFIAEHYMF 9 32 605.7706958354203 1209.5268387376404 2 605.7705688476562 MULTI HCD FTMS 0 0 0 9533 49565.48046875 0.41340648615582065 4 -0.12583160400390625 3 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 48.345845343767074 0.03388484103555672 1 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 32.435 0 0 2.6816 0 0 734.3486101348161 0 734.3486101348161 0 1.2371250542002343 0 0 0 0.9247425010840047 0 0 0 + Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6816 + + 13 NaN NaN 98913.8 NaN 7039 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9537 47.431 NaN 218440 35 0 9942.3 0.261 + 25390 SEIFHSQSF 9 73 541.2518624061255 1080.489171879051 2 541.2510986328125 MULTI HCD FTMS 0 0 0 9533 103567 0.975225809109461 2 -0.06267929077148438 4 Unmodified _SEIFHSQSF_ ENSG00000186522|ENST00000397712|SEPTIN10;ENST00000517342.1_1_8:57389388-57389772:-|nuORF;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 61.60191391372663 0.015340508911304802 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EHNTS{M(Oxidation (M))|F} 9 4 + 58.585 0 0 5.4221 5.4221 86.958 0 0 0 10.454168023219523 16.478174818886373 10.454168023219523 9.208187539523749 0 1.25 1.6989700043360187 0.3054621874040891 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EHNTS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EHGGTS{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}HNTS{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}HGGTS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EH{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]};{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]} 5.4221;4.5699;4.4546;3.6023;1.37;0.40245 -;-;-;-;-;- 410 NaN NaN 141802.9 NaN 7040 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9538 47.434 NaN 415720 35 0 68397 0.261 -1 0 55 498.7625967483357 995.5106405634714 2 498.7719421386719 MULTI HCD FTMS 0 0 0 9533 38901.3359375 0.5411885654365498 5 -0.152496337890625 5 NaN NaN 1 VT{I|L} 3 -1 27.205 0 0 2.7328 0 0 664.3001435925714 0 664.3001435925714 0 6.27513725768253 0 0 0 0.9247425010840047 0 0.75 0 VT{I|L} 2.7328 - 424 + NaN NaN 154944.5 NaN 7041 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9539 47.438 NaN 165650 35 0 28583 0.261 + 8236 GSLEEKEII 9 45 509.27654707990627 1016.5385412266126 2 509.2766418457031 MULTI HCD FTMS 0 0 0 9533 76984.1015625 0.7069345547308036 -1 0.03629302978515625 6 Unmodified _GSLEEKEII_ ENSG00000147081|ENST00000358526|AKAP4;nc|ENSG00000147081|Q5JQC9-2|AKAP4 12.240655878213236 0.2545997876781172 1 KEE{I|L}{I|L} 5 5 36.186 0 0 3.5597 0 0 386.17891127754064 0 386.17891127754064 0 20.70107520596089 0 0 0 0.4247425010840047 0 0 0 KEE{I|L}{I|L} 3.5597 - 74 NaN NaN 104304.1 NaN 7042 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9540 47.441 NaN 75097 35 0 6406.1 0.261 + 16131 LPTHLQSAL 9 36 490.2821862416544 978.5498195501089 2 490.2821350097656 MULTI HCD FTMS 0 0 0 9533 25323.048828125 0.6203855199942657 -1 0.03629302978515625 7 Unmodified _LPTHLQSAL_ ENSG00000198646|ENST00000359003|NCOA6 5.731851221503515 0.3075653528928475 1 N 1 9 0.3786 0 0 0.03869 0 0 510.3541846397557 351.13117395572505 861.4853585954808 0 0 0 0 0 0 0 0 0 N 0.03869 - 12 + NaN NaN 96709.4 NaN 7043 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9541 47.444 NaN 39263 35 0 4477.5 0.261 + 33179 YETIGLQQLE 10 30 597.3058409924669 1192.5971290517336 2 597.3065795898438 MULTI HCD FTMS 0 0 0 9533 18313.99609375 0.10758788303251882 10 -0.3054466247558594 8 Unmodified _YETIGLQQLE_ REV__ENSG00000184564|ENST00000647374|SLITRK6;REV__SLITRK6|p.N818Kfs*2|1|0.07|ENSG00000184564|chr13:85794055-85794056|-/T|frameshift_variant 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94003.6 NaN 7044 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9542 47.447 NaN 43373 35 0 5968.3 0.262 + 21165 PPPWYTGF 8 30 482.7298133794237 NaN 0 482.729736328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _PPPWYTGF_ ENST00000456170.5_1_1:44686783-44687191:-|nuORF 5.760428011301431 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87204.3 NaN 7045 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9543 47.451 NaN 80149 35 0 6211.9 0.261 -1 KLKCDECGKEF 11 41 452.88094122831745 NaN 0 452.8706359863281 PEAK HCD FTMS 0 0 0 9533 3948.4912109375 1 0 0 10 Carbamidomethyl (C) _KLKC(Carbamidomethyl (C))DECGKEF_ ENSG00000167380|ENST00000337433|ZNF226;ENST00000588883.5_1_19:44679604-44681824:+|nuORF 3.072263186857199 0.33340501757296537 1 H 1 -1 6.9897 0 0 0.77341 0 0 235.41708157597242 528.2594698541624 763.6765514301349 0 0 0 0 0 0 0 0 0 H 0.77341 - 3 + NaN NaN 91331 NaN 7046 2495 9533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9545 47.456 NaN 1492100 35 0 134540 0.327 + 6681 FPNKQGYVL 9 102 533.2898697829738 1064.5651866327476 2 533.2900390625 MULTI HCD FTMS 0 0 0 9544 675656.3125 0.6965580159544986 -8 0.23960113525390625 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 74.92900055777586 0.007493270374442853 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 78.973 0 0 7.4183 7.4183 90.564 0 0 0 24.678477052876815 42.175843142460025 24.678477052876815 9.208187539523749 0 1.774227503252014 1.5228787452803376 0.3807196863200844 0.9163865622122673 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NQKGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGVY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGQKGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N[AG]KGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L} 7.4183;6.5533;6.5533;6.3144;6.0753;5.7972;5.6925;5.4494;5.4494;5.0914 +;-;-;-;-;-;-;-;-;- + 4035 NaN NaN 313872.3 NaN 7047 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9546 47.46 NaN 195220 35 0 30541 0.261 + 11908 KFIDTTSKF 9 59 543.7953072662642 NaN 0 543.7826538085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 8.155526934196011 0.2557262968844962 1 NTV 3 8 8.1876 0 0 0.75422 0 0 208.11475119368464 560.2843721979124 768.399123391597 0 0 0 0 0 0 0 0 0 NTV 0.75422 - 67 + NaN NaN 107396.7 NaN 7048 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9547 47.464 NaN 198700 35 0 12507 0.261 + 8331 GYFGNPQKF 9 67 529.2586364347618 1056.5027199363235 2 529.2589111328125 MULTI HCD FTMS 0 0 0 9544 33628.73046875 0.05914892029467845 10 -0.2923736572265625 3 Unmodified _GYFGNPQKF_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3 39.957323273324995 0.06554068735427583 1 [YG]{M(Oxidation (M))|F}[NG][QP]K{M(Oxidation (M))|F} 9 0 + 46.36 0 0 4.3881 4.3881 89.932 0 0 0 16.681212380090216 30.875912339897198 16.681212380090216 46.36046240493748 0 1.9247425010840047 1.3979400086720375 0 0 + + [YG]{M(Oxidation (M))|F}[NG][QP]K{M(Oxidation (M))|F} 4.3881 + + 100 NaN NaN 114490.3 NaN 7049 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9548 47.467 NaN 201800 35 0 49305 0.261 + 35220 YVLRRGDVR 9 33 567.3317158081963 1132.6488786831926 2 567.3193359375 MULTI HCD FTMS 0 0 0 9544 10555.6142578125 0.46509207007609576 4 -0.11612319946289062 4 Unmodified _YVLRRGDVR_ REV__ENSG00000135373|ENST00000257831|EHF;REV__ENSG00000163435|ENST00000367284|ELF3;REV__ENST00000475698.1_1_1:201982922-201984448:+|nuORF;REV__nc|ENSG00000135373|Q9NZC4-2|EHF;REV__nc|ENSG00000135373|Q9NZC4-3|EHF;REV__nc|ENSG00000163435|P78545-2|ELF3 5.230669730166228 0.3113646817964458 1 [YV]{I|L} 3 -1 27.447 0 0 2.4233 0 0 0 754.4105693988007 754.4105693988007 1.249387366082999 0 0 0 0 0 1.6989700043360187 0 0 [YV]{I|L} 2.4233 + + 21 NaN NaN 110972.6 NaN 7050 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9549 47.47 NaN 43931 35 0 5075.7 0.261 + 35433 YYEKLHTYF 9 26 632.3058851267946 1262.597217320389 2 632.3056030273438 MULTI HCD FTMS 0 0 0 9544 16970.53515625 0.09922091908736588 10 -0.2923736572265625 5 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 28.494509381512117 0.11816142465008336 1 N{M(Oxidation (M))|F}HT[Y{M(Oxidation (M))|F}] 6 5 13.161 0 0 1.0423 0 0 435.20031898230155 0 435.20031898230155 0 5.713337517843655 0 0 0 0.8182503180159344 0 0.3807196863200844 0 N{M(Oxidation (M))|F}HT[Y{M(Oxidation (M))|F}] 1.0423 - 15 + NaN NaN 88547.6 NaN 7051 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9550 47.474 NaN 180370 35 0 62849 0.264 -1 TYVIRYLCK 9 39 405.88970204458815 1214.6472767339644 3 405.8902282714844 MULTI HCD FTMS 0 0 0 9544 37258.4375 0.4593775995481241 -6 0.17461013793945312 6 Carbamidomethyl (C) _TYVIRYLC(Carbamidomethyl (C))K_ ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant 7.101721422024254 0.29718071671418667 1 TY 2 -1 45.217 0 0 3.7226 0 0 0 947.513874855966 947.513874855966 24.247425010840047 0 0 0 0 0.4247425010840047 2 0 0 TY 3.7226 + + 12 + NaN NaN 105540.1 NaN 7052 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9551 47.477 NaN 82932 35 0 22157 0.261 -1 WCMRRAAW 8 43 576.7641536475795 1151.513754361959 2 576.7652587890625 MULTI HCD FTMS 0 0 0 9544 29294.09375 0.7809149589298658 -1 0.036373138427734375 7 Carbamidomethyl (C),Oxidation (M) _WC(Carbamidomethyl (C))M(Oxidation (M))RRAAW_ ENST00000518644.5_1_17:78389610-78398076:+|nuORF 2.577480529830294 0.5381683276125971 1 MH 2 -1 17.959 0 0 1.5596 0 0 0 880.3944796197874 880.3944796197874 10.969100130080562 0 0 0 0 0 0 0 0 MH 1.5596 - 19 + NaN NaN 116013.5 NaN 7053 2496 9544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9553 47.482 NaN 1389200 35 0 197360 0.327 + 34211 YPDPYGGEKL 10 99 569.7743913034163 1137.5342296736326 2 569.7744750976562 MULTI HCD FTMS 0 0 0 9552 948087.0625 0.9285482030067557 1 -0.03649139404296875 1 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 135.86342318000737 7.994840703560577E-06 1 YPDPYGGEK{I|L} 10 0 + 106 0 0 9.3181 9.3181 94.14 0 0 0 9.590606190045108 9.590606190045108 9.590606190045108 9.590606190045108 0 3.223197507588033 1.5228787452803376 1.653598431600422 0.2614393726401688 + + YPDPYGGEK{I|L};[DP]YPYGGKE{I|L};YPKGGYPDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGEK{I|L};[DP]YPYGGEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGKE{I|L};[DP]YPYNKE{I|L};YPKNYPDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L};[DP]YPYNEK{I|L} 9.3181;8.475;8.4688;8.2917;8.1167;7.837;7.7258;7.7197;7.5425;7.3676 +;-;-;+;-;-;-;-;-;- + 5042 + NaN NaN 315951.4 NaN 7054 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9554 47.487 NaN 437770 35 0 40576 0.261 + 16710 LYADVGGKQF 10 69 549.2845950611785 1096.554637189157 2 549.2849731445312 MULTI HCD FTMS 0 0 0 9552 242897.078125 0.45819328033267986 4 -0.11627578735351562 2 Unmodified _LYADVGGKQF_ ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF 125.0377797344192 2.9548649632433943E-05 1 {I|L}YADVNKQ{M(Oxidation (M))|F} 9 2 + 121.01 0 0 11.036 11.036 94.23 0 0 0 14.220449851406514 14.220449851406514 14.220449851406514 9.208187539523749 0 3.1989700043360187 2 0 1.3441876774005248 {I|L}YADVNKQ{M(Oxidation (M))|F};{I|L}YADVGGKQ{M(Oxidation (M))|F};{I|L}YADVNK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGKQ{M(Oxidation (M))|F};[Y{I|L}]ADVNKQ{M(Oxidation (M))|F};{I|L}YADVGGK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVNK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGG[KA]{M(Oxidation (M))|F};[Y{I|L}]ADVNG[KA]{M(Oxidation (M))|F} 11.036;10.196;9.9329;9.7391;9.4179;9.0971;8.9033;8.5782;8.4461;8.121 -;+;-;+;-;-;-;-;-;- + 1026 + NaN NaN 151449.1 NaN 7055 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9555 47.49 NaN 1036300 35 0 115530 0.261 + 9772 HYKPTPLYF 9 84 583.3056984234008 1164.5968439136016 2 583.3056640625 MULTI HCD FTMS 0 0 0 9552 501109.5 0.4582244983149527 -5 0.14493179321289062 3 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 62.57269311338072 0.013982455292112035 1 [{I|L}P][TP]KYHY{M(Oxidation (M))|F} 9 6 + 62.374 0 0 5.3558 5.3558 85.73 0 0 0 8.482587709797329 8.482587709797329 8.482587709797329 8.482587709797329 0 0.5 2 1.2302046884880937 0 [{I|L}P][TP]KYHY{M(Oxidation (M))|F};HYK[TP][{I|L}P]Y{M(Oxidation (M))|F};[{I|L}P][TP]KYYH{M(Oxidation (M))|F};[TP][{I|L}P]KYHY{M(Oxidation (M))|F};{[WN]|[YH]}KY[TP]{I|L}P{M(Oxidation (M))|F};{[WN]|[YH]}KY[{I|L}P]TP{M(Oxidation (M))|F};[{I|L}P][TP]KY[W{M(Oxidation (M))|F}]N;[TP][{I|L}P]KYYH{M(Oxidation (M))|F};{[WN]|[YH]}KY[TP]{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}[HN][{I|L}P]Y{M(Oxidation (M))|F} 5.3558;4.6275;4.0218;3.5323;2.9063;2.7699;2.3663;2.1982;1.1545;0.65785 -;+;-;-;-;-;-;-;-;- + 516 NaN NaN 236640.8 NaN 7056 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9556 47.493 NaN 569810 35 0 112720 0.262 + 15912 LPLTEHEL 8 69 476.26084277123493 950.5071326092699 2 476.2607421875 MULTI HCD FTMS 0 0 0 9552 247326.15625 0.544090594262753 -3 0.09897232055664062 4 Unmodified _LPLTEHEL_ ENSG00000172578|ENST00000341319|KLHL6 97.07464715276575 0.03528778528112001 1 {I|L}P{I|L}TE 5 3 87.493 0 0 9.2049 0 0 0 394.1737459772094 394.1737459772094 68.53453978885995 0 0 0 0 1.7059771852360797 1.6989700043360187 1.5484550065040281 0 + {I|L}P{I|L}TE 9.2049 + + 228 + NaN NaN 164245.1 NaN 7057 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9557 47.497 NaN 202130 35 0 38205 0.261 + 2642 DVEPCRQLIE 10 50 601.2976210883207 1200.5806892434414 2 601.7794189453125 MULTI HCD FTMS 0 0 0 9552 6333.3330078125 0.06673012820169841 30 -0.8735733032226562 5 Unmodified _DVEPCRQLIE_ REV__ENSG00000133302|ENST00000265140|SLF1 5.731851221503515 0.44496410492002586 1 EVN[C(Carbamidomethyl (C))Q]{I|L} 6 -1 22.268 0 0 1.8548 0 0 130.13227119439085 324.08332239322505 454.2155935876159 0 0 0 0 0 0.5 0 0 0.4247425010840047 EVN[C(Carbamidomethyl (C))Q]{I|L} 1.8548 - 94 + NaN NaN 109738.1 NaN 7058 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9558 47.5 NaN 288760 35 0 63068 0.273 + 12038 KIEREYHVEKK 11 59 486.9413769155127 1457.8023013467382 3 487.27874755859375 MULTI HCD FTMS 0 0 0 9552 100856.328125 0.7770504956630424 2 -0.06315231323242188 6 Unmodified _KIEREYHVEKK_ tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1 1.214830529360525 0.41359283248740725 1 [VS]A{I|L}[MT]{I|L}A 8 11 46.203 0 0 3.1694 0 0 0 668.3382107965915 668.3382107965915 42.70812200728862 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 [VS]A{I|L}[MT]{I|L}A 3.1694 - 164 NaN NaN 129355.5 NaN 7059 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9559 47.504 NaN 163870 35 0 12668 0.261 + 29827 VEQTGLEPL 9 57 493.26341743849616 984.5122819437923 2 493.26361083984375 MULTI HCD FTMS 0 0 0 9552 64905.234375 0.25840403216129243 4 -0.11627578735351562 7 Unmodified _VEQTGLEPL_ REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF 20.41453444215458 0.18397929046831515 1 {NN|[MP]|[D{I|L}]|[EV]}Q 3 -1 28.301 0 0 2.8746 0 0 0 625.3186838815454 625.3186838815454 9.71726222832956 0 0 0 0 0.5 2 0 0 {NN|[MP]|[D{I|L}]|[EV]}Q 2.8746 + + 28 NaN NaN 123230.9 NaN 7060 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9560 47.507 NaN 163200 35 0 52209 0.261 + -1 FMEWCYLL 8 31 589.2555593946923 1176.4965658561846 2 589.2561645507812 MULTI HCD FTMS 0 0 0 9552 58614.65625 0.1973207819658217 9 -0.2660675048828125 8 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))EWC(Carbamidomethyl (C))YLL_ REV__ENST00000578529.5_1_18:259269-260310:-|nuORF;REV__ENST00000581116.1_1_18:259269-264031:-|nuORF 9.347437153973935 0.5250182646323369 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 28.812 0 0 2.449 0 0 785.2798939435562 0 785.2798939435562 0 18.354706403678875 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.449 - 7 NaN NaN 108919.9 NaN 7061 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9561 47.51 NaN 120460 35 0 12207 0.261 + -1 RHISRNQMG 9 39 557.7795440929671 1113.544535252734 2 557.7799072265625 MULTI HCD FTMS 0 0 0 9552 61199.31640625 0.4361401576905693 4 -0.11627578735351562 9 Oxidation (M) _RHISRNQM(Oxidation (M))G_ REV__ENST00000483942.1_1_3:63082233-63082356:-|nuORF 7.289230182591677 0.29575926068275815 1 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 39.253 0 0 3.525 0 0 662.373885664921 0 662.373885664921 0 32.79885926180398 0 0 0 1.5 0 0 0.805462187404089 TN{[MS]|[{M(Oxidation (M))|F}A]} 3.525 - 30 + NaN NaN 102954.2 NaN 7062 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9562 47.514 NaN 86045 35 0 13937 0.261 + 23544 RPAQVEPLL 9 36 511.8031671489324 1021.5917813646648 2 511.80316162109375 MULTI HCD FTMS 0 0 0 9552 24580.15234375 0.05569305476027303 12 -0.3596534729003906 10 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 9.38312468134398 0.279288223203164 1 E[{I|L}P]{I|L} 4 5 25.005 0 0 2.4477 0 0 551.3158436505875 0 551.3158436505875 0 25.00508444608478 0 0 0 0.8807196863200843 0 0 0 + E[{I|L}P]{I|L} 2.4477 + + 5 NaN NaN 102367.7 NaN 7063 2497 9552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9564 47.519 NaN 493460 35 0 30661 0.327 + 34233 YPDRIMNTF 9 90 586.7737018509798 1171.5328507687595 2 586.7740478515625 MULTI HCD FTMS 0 0 0 9563 246615.90625 0.06159182656001179 -25 0.7235107421875 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 117.83759599426817 0.001662893820975323 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 76.854 0 0 6.5601 6.5601 86.736 0 0 0 5.998689160016156 5.998689160016156 5.998689160016156 5.897554856604188 0 1.8338395061109685 1.3979400086720375 0 0.8494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPE[RV]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 6.5601;6.0567;6.0481;5.7741;5.484;5.4449;5.2707;4.9844;4.9205;4.7849 +;-;+;-;-;-;-;-;-;- + 2849 NaN NaN 157553.2 NaN 7064 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9565 47.523 NaN 330770 35 0 22947 0.264 + 35428 YYEKLHTYF 9 63 421.8729716370388 1262.5970855113164 3 421.8730773925781 MULTI HCD FTMS 0 0 0 9563 159424.734375 0.153730489776586 12 -0.3464698791503906 2 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 23.789781309258295 0.1548179064208189 1 YYYM 4 6 50.165 0 0 3.9732 0 0 0 639.3245943658811 639.3245943658811 28.44335023848103 0 0 0 0 0.4247425010840047 2 0 0 YYYM 3.9732 - 53 + NaN NaN 137323 NaN 7065 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9566 47.527 NaN 348060 35 0 62758 0.262 + 15551 LPDQDEMDL 9 70 546.231604285191 1090.448655637182 2 546.2318725585938 MULTI HCD FTMS 0 0 0 9563 144311.34375 0.7126044582268553 -5 0.15516281127929688 3 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 47.7319792270244 0.034743597693959835 1 {NN|[MP]|[D{I|L}]|[EV]}PQDE{M(Oxidation (M))|F}D{I|L} 9 2 + 80.842 0 0 7.4136 7.4136 90.551 0 0 0 19.990823894397565 57.654171688421556 19.990823894397565 9.208187539523749 0 1.8807196863200843 1.5228787452803376 0.3494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}PQDE{M(Oxidation (M))|F}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[AG]DE{M(Oxidation (M))|F}D{I|L};{[QN]|[E{I|L}]|[KN]}[NP]DE{M(Oxidation (M))|F}D{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[NS]{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}{[QS]|[NT]}V{M(Oxidation (M))|F} 7.4136;6.5692;4.3245;1.9343;1.7308;1.5694 -;-;-;-;-;- 211 NaN NaN 137359.1 NaN 7066 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9567 47.53 NaN 118690 35 0 10408 0.261 -1 ADKMDMSL 8 42 492.70412209824383 983.3936912632877 2 492.7041320800781 MULTI HCD FTMS 0 0 0 9563 54827.1484375 0.5773216798599662 9 -0.2628898620605469 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 24.020572477871973 0.4170589785259073 1 {M(Oxidation (M))|F}S{I|L} 3 -1 30.688 0 0 3.1206 0 0 618.2296620099625 0 618.2296620099625 0 -2.2881070093006173 -2.2881070093006173 0 0 0.4247425010840047 0 0.3252574989159953 0 {M(Oxidation (M))|F}S{I|L} 3.1206 + + 19 NaN NaN 101980.6 NaN 7067 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9568 47.534 NaN 171930 35 0 42632 0.261 + 5136 FETEEANRYF 10 45 435.8627405590943 1304.566392277483 3 435.86297607421875 MULTI HCD FTMS 0 0 0 9563 63654.05859375 0.7255657457060978 -4 0.13546371459960938 5 Unmodified _FETEEANRYF_ MYO18B|p.S2483Y|1|0.11|ENSG00000133454|chr22:26027422-26027422|C/A|missense_variant 3.5870582119611467 0.4563168352879256 1 YP 2 9 37.959 0 0 2.9097 0 0 0 1041.4292543525664 1041.4292543525664 22.47425010840047 0 0 0 0 0 1.6989700043360187 0 0 YP 2.9097 - 9 + NaN NaN 109917.5 NaN 7068 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9569 47.537 NaN 129560 35 0 16907 0.261 + 24731 RYLVISEKL 9 50 560.8397750929485 1119.6649972526968 2 560.8397216796875 MULTI HCD FTMS 0 0 0 9563 34095.33203125 0.017578066597126702 30 -0.8706130981445312 6 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 11.494710602746466 0.2610445893512368 1 {I|L}SEK{I|L} 5 4 37.435 0 0 3.3434 0 0 531.3170643537125 0 531.3170643537125 0 19.47621246364342 0 0 0 0.4247425010840047 0 0 0 + {I|L}SEK{I|L} 3.3434 + + 41 NaN NaN 106866.6 NaN 7069 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9570 47.54 NaN 60198 35 0 10950 0.261 + 11684 IYYTGKYQSL 10 38 618.3189251503427 1234.6232973674853 2 618.318115234375 MULTI HCD FTMS 0 0 0 9563 33755.9375 0.3640649839430925 3 -0.07978439331054688 7 Unmodified _IYYTGKYQSL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 19.361941925380144 0.3300069447713393 1 [Y{I|L}]YT 4 6 44.693 0 0 3.6199 0 0 0 691.3394869440061 691.3394869440061 36.39198151975222 0 0 0 0 0.4247425010840047 2 0.4247425010840047 0 + [Y{I|L}]YT 3.6199 + + 11 + NaN NaN 99835.6 NaN 7070 2498 9563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9572 47.545 NaN 1483500 35 0 182230 0.327 + 549 APEEHPVLL 9 100 502.7741653025147 1003.5337776718294 2 502.77423095703125 MULTI HCD FTMS 0 0 0 9571 645305.5625 0.006188765626666339 43 -1.2416343688964844 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 139.54400939418784 2.61670173137287E-05 1 [PA]EEHPV{I|L}{I|L} 9 0 + 79.005 0 0 7.8726 7.8726 87.558 0 0 0 2.6770394729625338 2.6770394729625338 2.6770394729625338 2.6770394729625338 0 2.079689690656103 1.3979400086720375 0.9436726795685342 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[PA]EEH{I|L}[VP]{I|L};[EP]EAHPV{I|L}{I|L};[VP]DDH{I|L}[VP]{I|L};[EP]AEH{I|L}[VP]{I|L};[EP]EAH{I|L}[VP]{I|L};[EP]E[HV]PA{I|L}{I|L} 7.8726;7.6059;6.001;5.7348;5.5182;5.3554;3.6465;3.3804;3.001;2.7606 +;+;-;-;-;-;-;-;-;- + 940 NaN NaN 312135.8 NaN 7071 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9573 47.55 NaN 1256800 35 0 188780 0.261 -1 MPETTETVL 9 70 518.7471070197194 1035.4796611062386 2 518.7469482421875 MULTI HCD FTMS 0 0 0 9571 556224.1875 0.612498185648006 -12 0.3586540222167969 2 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 37.97399986684836 0.07464525285885698 1 TETV{I|L} 5 -1 54.24 0 0 5.2382 0 0 474.17820937324376 0 474.17820937324376 0 46.98100461566641 0 0 0 1.079689690656103 0 0.8494850021680094 0 TETV{I|L} 5.2382 + + 192 NaN NaN 278506.3 NaN 7072 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9574 47.554 NaN 253430 35 0 37847 0.261 -1 MPDLPEKL 8 55 479.7494054996792 957.4842580661584 2 479.74920654296875 MULTI HCD FTMS 0 0 0 9571 121727.5703125 0.3963751700499254 -17 0.4978981018066406 3 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 38.175570920033316 0.25436662042464897 1 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 -1 + 44.486 0 0 4.6462 4.6462 90.231 0 0 0 18.517281225732418 12.715299873086607 12.715299873086607 44.48638135581298 0 1.6861818737241734 0 0 0 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.6462 + + 53 + NaN NaN 138367.4 NaN 7073 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9575 47.557 NaN 435820 35 0 55015 0.261 -1 IPHMDIEAL 9 53 527.7654511237239 1053.5163493142477 2 527.7659301757812 MULTI HCD FTMS 0 0 0 9571 199150.953125 0.2160579758670417 -6 0.18182373046875 4 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 26.88365393820708 0.12808753336095696 1 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 7 -1 44.513 0 0 4.2252 0 0 202.13167006660314 0 202.13167006660314 0 27.523204176022773 0 0 0 1 0 0.8807196863200843 0 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 4.2252 - 76 NaN NaN 156854.3 NaN 7074 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9576 47.56 NaN 170360 35 0 16089 0.261 + 22937 QYTQALEKF 9 60 564.2900926694734 1126.5656324057468 2 564.2891845703125 MULTI HCD FTMS 0 0 0 9571 64219.25 0.5633135903279672 -3 0.08945846557617188 5 Unmodified _QYTQALEKF_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|3|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 74.19965305603844 0.007729275404663812 1 [YQ]TQA{I|L}EK{M(Oxidation (M))|F} 9 0 + 42.303 0 0 3.755 3.755 84.491 0 0 0 13.735899786366225 3.115065281575511 3.115065281575511 9.208187539523749 0 1.024227503252014 0 0.4247425010840047 0.3252574989159953 + + [YQ]TQA{I|L}EK{M(Oxidation (M))|F};[YQ]T[AG]A{I|L}EK{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KA]{[QS]|[NT]}Q[RH];[Y{I|L}]Q[WP]Q[RH];[Y{I|L}][AG][WP]Q[RH];[Y{I|L}]Q[WP][AG][RH] 3.755;2.9376;1.7624;1.1682;0.34605;0.34605 +;-;-;-;-;- + 154 + NaN NaN 120013.1 NaN 7075 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9577 47.564 NaN 42737 35 0 7597.1 0.261 + 23950 RVCGAGRHRRS 11 28 627.8379311429433 1253.6613093526864 2 627.8380737304688 MULTI HCD FTMS 0 0 0 9571 22843.794921875 0.43088939655340736 3 -0.08302688598632812 6 Unmodified _RVCGAGRHRRS_ REV__ENST00000477931.5_1_20:57464155-57485881:+|nuORF;REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF 4.5288652416199255 0.3990586020344083 1 A 1 -1 11.99 0 0 0.95637 0 0 415.2051740181939 764.3971041315061 1179.6022781497 0 0 0 0 0 0.5 0 0 0 A 0.95637 + + 7 + NaN NaN 91622.1 NaN 7076 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9578 47.567 NaN 132510 35 0 31404 0.263 + -1 MLTTMLLI 8 42 484.2640012823278 966.5134496314556 2 484.2644348144531 MULTI HCD FTMS 0 0 0 9571 44209.73828125 0.47452155165293364 -2 0.06315231323242188 7 2 Oxidation (M) _M(Oxidation (M))LTTM(Oxidation (M))LLI_ REV__nc|ENSG00000183960|Q96L42-2|KCNH8 9.347437153973935 0.5250182646323369 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6869 0 0 722.3350837177418 0 722.3350837177418 0 23.494850021680094 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6869 + + 7 NaN NaN 101776.3 NaN 7077 2499 9571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9580 47.572 NaN 226750 35 0 37408 0.327 + 14732 LHPSAEMVL 9 51 498.7625967483357 995.5106405634714 2 498.7717590332031 MULTI HCD FTMS 0 0 0 9579 6198.70068359375 0.08623523716291812 10 -0.29314422607421875 1 Unmodified _LHPSAEMVL_ ENST00000460219.2_1_6:36937722-36937803:-|nuORF 18.13498045792455 0.20367413111508956 1 VTV[MD]ST{I|L} 8 8 28.835 0 0 2.8965 0 0 131.0778567149777 0 131.0778567149777 0 10.251218656855698 0 0 0 0.9247425010840047 0 1 0 VTV[MD]ST{I|L} 2.8965 - 175 + NaN NaN 109472.7 NaN 7078 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9581 47.576 NaN 98272 35 0 22557 0.261 -1 VTLTCEVPA 9 32 495.25216084997214 988.4897687667443 2 495.2521667480469 MULTI HCD FTMS 0 0 0 9579 26033.177734375 0.6005780676551921 -3 0.08981704711914062 2 Carbamidomethyl (C) _VTLTC(Carbamidomethyl (C))EVPA_ ENSG00000204305|ENST00000375076|AGER;nc|ENSG00000204305|Q15109-10|AGER;nc|ENSG00000204305|Q15109-2|AGER;nc|ENSG00000204305|Q15109-3|AGER;nc|ENSG00000204305|Q15109-4|AGER;nc|ENSG00000204305|Q15109-6|AGER;nc|ENSG00000204305|Q15109-7|AGER;nc|ENSG00000204305|Q15109-8|AGER;nc|ENSG00000204305|Q15109-9|AGER 11.640296217721598 0.25978676193971967 1 E 1 -1 21.237 0 0 2.1484 0 0 574.2783867860787 282.14562614134076 856.4240129274194 0 0 0 0 0 1 0 0.4247425010840047 0 E 2.1484 + + 2 + NaN NaN 102322.1 NaN 7079 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9582 47.58 NaN 38433 35 0 6663.6 0.261 + 23738 RRCMPLHSRV 10 21 627.8379311429433 1253.6613093526864 2 627.8361206054688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RRCMPLHSRV_ ENSG00000248329|ENST00000507152|APELA 5.296884461304476 0.4472664531305844 1 A 1 10 11.99 0 0 0.95637 0 0 415.20783142475517 764.3894137018186 1179.5972451265739 0 0 0 0 0 0.5 0 0 0 A 0.95637 - 2 + NaN NaN 88106.5 NaN 7080 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9583 47.583 NaN 77633 35 0 8440.3 0.261 -1 HFIAEHYMF 9 40 605.7706958354203 1209.5268387376404 2 605.77099609375 MULTI HCD FTMS 0 0 0 9579 47591.76953125 0.3969445272351637 9 -0.26983642578125 4 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 39.957323273324995 0.06554068735427583 1 H{M(Oxidation (M))|F}{I|L} 3 -1 33.188 0 0 2.7438 0 0 0 809.2913302057249 809.2913302057249 -1.5051499783199063 0 -1.5051499783199063 0 0 1 0 0 0 H{M(Oxidation (M))|F}{I|L} 2.7438 + + 14 + NaN NaN 98892.8 NaN 7081 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9584 47.587 NaN 49133 35 0 4877.2 0.261 -1 RCCPFYWC 8 31 596.2301025390625 NaN 0 596.2301025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))C(Carbamidomethyl (C))PFYWC_ nc|ENSG00000198788|Q02817|MUC2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111912.6 NaN 7082 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9585 47.59 NaN 77860 35 0 4658.3 0.261 + 1580 AYVHMVTHF 9 44 552.7688585254754 NaN 0 552.76904296875 PEAK HCD FTMS 0 0 0 9579 16101.0888671875 0.36279759057289995 10 -0.29314422607421875 6 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 20.453626601364224 0.18435338882370536 1 SVHM 4 6 26.414 0 0 2.3936 0 0 147.06997616805796 499.23203455142817 646.3020107194861 0 0 0 0 0 0.5 0 0.4247425010840047 0 SVHM 2.3936 - 18 + NaN NaN 107929.6 NaN 7083 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9586 47.593 NaN 97791 35 0 8158.3 0.261 + -1 NCGPYACMFP 10 40 559.7073074973969 NaN 0 559.7224731445312 PEAK HCD FTMS 0 0 0 9579 11584.7021484375 0.4934517494239052 5 -0.15295028686523438 7 Oxidation (M) _NCGPYACM(Oxidation (M))FP_ REV__ENSG00000184937|ENST00000452863|WT1;REV__nc|ENSG00000184937|P19544-2|WT1;REV__nc|ENSG00000184937|P19544-3|WT1;REV__nc|ENSG00000184937|P19544-4|WT1;REV__nc|ENSG00000184937|P19544-6|WT1;REV__nc|ENSG00000184937|P19544-8|WT1;REV__nc|ENSG00000184937|P19544-9|WT1;REV__nc|ENSG00000184937|P19544|WT1 1.4819007175156935 0.33891598740166873 1 G{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.71226 0 0 108.00502082502278 802.326745365768 910.3317661907909 0 0 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 0.71226 - 7 + NaN NaN 104604.6 NaN 7084 2500 9579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9588 47.598 NaN 1707000 35 0 157930 0.327 + 6682 FPNKQGYVL 9 103 533.2898697829738 1064.5651866327476 2 533.2899780273438 MULTI HCD FTMS 0 0 0 9587 897823.75 0.9255982936988069 -3 0.07978439331054688 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 107.99703571036002 0.003269392969029945 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 83.391 0 0 7.8333 7.8333 87.885 0 0 0 16.117646881713767 14.09256854528806 14.09256854528806 3.4678748622465605 0 1.8494850021680094 1.6989700043360187 0.3494850021680094 1.110023343740972 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKGAGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKGAGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKGQYV{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}GAGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L} 7.8333;7.5075;6.9683;6.6467;6.3308;6.3193;6.2003;5.9935;5.8288;5.7719 +;-;-;-;-;-;-;-;-;- + 4162 NaN NaN 340472.2 NaN 7085 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9589 47.603 NaN 199180 35 0 16928 0.261 + 1339 AYPHNLMTF 9 43 555.2577602370291 1108.500967540858 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9587 102131.0390625 0.06226372902628944 27 -0.7908287048339844 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 74.92900055777586 0.007493270374442853 1 N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5 4 40.578 0 0 3.6606 0 0 468.2142811505875 0 468.2142811505875 0 40.57782605006366 0 0 0 1.5356668758921828 0 0.5 0 + N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.6606 + + 98 NaN NaN 126149.5 NaN 7086 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9590 47.607 NaN 205070 35 0 46008 0.262 + 24034 RWPKKSAEFLL 11 46 458.9344834295646 1373.7816208888937 3 458.9347839355469 MULTI HCD FTMS 0 0 0 9587 57498.8984375 0.5203267488350927 -3 0.07978439331054688 3 Unmodified _RWPKKSAEFLL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 3.8459078486920597 0.402053821155582 1 {I|L}{I|L} 2 9 25.217 0 0 1.8356 0 0 1129.6029935170477 0 1129.6029935170477 0 15.752574989159953 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 1.8356 + + 20 NaN NaN 116678 NaN 7087 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9591 47.61 NaN 96440 35 0 18774 0.261 + 28106 TIDEHDAII 9 36 513.7584697223768 1025.5023865115536 2 513.7586669921875 MULTI HCD FTMS 0 0 0 9587 31779.34765625 0.49812381113732157 -1 0.026458740234375 4 Unmodified _TIDEHDAII_ ENSG00000152558|ENST00000398136|TMEM123;nc|ENSG00000152558|Q8N131-2|TMEM123 15.847184025352803 0.2234401846867398 1 [{I|L}T]A 3 6 30.686 0 0 2.9923 0 0 0 737.3108026094629 737.3108026094629 9.71726222832956 0 0 0 0 0.5 2 0 0 [{I|L}T]A 2.9923 - 9 NaN NaN 110353.1 NaN 7088 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9592 47.613 NaN 88174 35 0 15780 0.261 + 28693 TSIEDQDEL 9 34 525.2356069004259 1048.4566608676516 2 525.2354125976562 MULTI HCD FTMS 0 0 0 9587 32864.32421875 0.8464887577424651 -2 0.05312347412109375 5 Unmodified _TSIEDQDEL_ ENSG00000242372|ENST00000374450|EIF6;nc|ENSG00000242372|P56537-2|EIF6 21.536976647645854 0.1742816388551942 1 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L} 5 5 21.923 0 0 2.091 0 0 430.20652968574376 0 430.20652968574376 0 17.319393642848482 0 0 0 0.5 0 0.4247425010840047 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L} 2.091 - 28 NaN NaN 103068.1 NaN 7089 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9593 47.617 NaN 174260 35 0 26666 0.262 -1 KYMGIPQIRQL 11 43 454.9235763026195 1361.7488995080585 3 455.2579650878906 MULTI HCD FTMS 0 0 0 9587 23210.361328125 0.5202119439144723 -2 0.05312347412109375 6 Oxidation (M) _KYM(Oxidation (M))GIPQIRQL_ ENSG00000141252|ENST00000437048|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53 11.631370582801994 0.35573789852458537 1 {I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L} 4 -1 26.198 0 0 1.9238 0 0 833.4092774574381 0 833.4092774574381 0 22.21848749616356 0 0 0 1 0 0 0 {I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L} 1.9238 + + 10 NaN NaN 116949.8 NaN 7090 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9594 47.62 NaN 19653 35 0 4663.8 0.261 + 33030 YCHNMQLTLH 10 22 630.2862145222637 NaN 0 629.8226318359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YCHNMQLTLH_ ENST00000467807.5_1_19:56884531-56888546:+|nuORF;ENST00000468396.5_1_19:56884531-56888546:+|nuORF;nc|ENSG00000290720|Q5EBM4-2|ZNF542P;nc|ENSG00000290720|Q5EBM4|ZNF542P 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79848.2 NaN 7091 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9595 47.623 NaN 28226 35 0 4015.9 0.261 + 10364 IMCMWWDRI 9 26 627.2846565519511 1252.5547601707021 2 627.2852172851562 MULTI HCD FTMS 0 0 0 9587 17951.00390625 0.33611836450755805 18 -0.5075607299804688 8 Unmodified _IMCMWWDRI_ REV__ENSG00000174915|ENST00000308020|PTDSS2;REV__ENST00000526878.5_1_11:460175-490579:+|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98661.2 NaN 7092 2501 9587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9597 47.628 NaN 461420 35 0 64442 0.327 + 34212 YPDPYGGEKL 10 71 569.7743913034163 1137.5342296736326 2 569.7744140625 MULTI HCD FTMS 0 0 0 9596 237458.65625 0.23256493762073294 6 -0.18340301513671875 1 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 84.5221896805406 0.0014228510802933125 1 YPDPYGGEK{I|L} 10 0 + 73.664 0 0 6.4757 6.4757 85.353 0 0 0 3.0938593453571883 3.0938593453571883 3.0938593453571883 3.0938593453571883 0 2.572682509756042 1.6989700043360187 0.7302046884880937 0 + + YPDPYGGEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L};[DP]YPYGGEK{I|L};[DP]YPYNEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGYPDE{I|L};Y[KP]GGYPDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[KQ][DP]Y{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NYPDE{I|L};Y[KP]NYPDE{I|L} 6.4757;6.2038;5.4546;4.6901;3.9409;3.4801;3.4588;3.1128;2.7309;2.7096 +;+;-;-;-;-;-;-;-;- + 435 + NaN NaN 164011.9 NaN 7093 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9598 47.633 NaN 140020 35 0 9468.9 0.261 -1 YITGKQLKM 9 60 549.3029447579198 1096.5913365826395 2 549.2848510742188 MULTI HCD FTMS 0 0 0 9596 26087.80859375 0.38337785279713726 -2 0.056362152099609375 2 Oxidation (M) _YITGKQLKM(Oxidation (M))_ ENST00000562527.5_2_16:10481038-10481098:+|nuORF 12.531546534597751 0.2520865569484384 1 [Y{I|L}]ADVG 6 -1 33.478 0 0 3.0529 0 0 0 475.26965624500207 475.26965624500207 12.97074180921662 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]ADVG 3.0529 - 211 NaN NaN 110853.8 NaN 7094 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9599 47.637 NaN 171730 35 0 18151 0.261 + 4308 EVSDVEIITR 10 49 580.8115329208747 1159.6085129085493 2 580.8120727539062 MULTI HCD FTMS 0 0 0 9596 57383.31640625 0.8606807907694582 -1 0.029903411865234375 3 Unmodified _EVSDVEIITR_ ENSG00000198000|ENST00000442668|NOL8;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8 39.212999716063884 0.15223626971197562 1 {NN|[MP]|[D{I|L}]|[EV]}SDVE{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 47.572 0 0 4.1024 4.1024 89.585 0 0 0 19.155214291848907 7.269987279362624 7.269987279362624 47.571589370896405 0 0.9947026752325154 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}SDVE{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.1024 + + 95 + NaN NaN 117112.1 NaN 7095 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9600 47.64 NaN 56934 35 0 11480 0.261 + 20878 PINMENLPVNG 11 28 599.3007468767154 1196.5869408202307 2 599.3014526367188 MULTI HCD FTMS 0 0 0 9596 18433.0703125 0.5056079720108736 -2 0.056362152099609375 4 Unmodified _PINMENLPVNG_ ENSG00000149328|ENST00000535456|GLB1L2;ENST00000529077.5_1_11:134236970-134242406:+|nuORF 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106135.4 NaN 7096 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9601 47.643 NaN 24028 35 0 3450 0.261 + 35434 YYEKLHTYF 9 22 632.3058851267946 1262.597217320389 2 632.3055419921875 MULTI HCD FTMS 0 0 0 9596 15958.0009765625 0.09330097778964162 16 -0.457794189453125 5 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 10.799506525563784 0.2670509983294061 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 95400.5 NaN 7097 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9602 47.646 NaN 48358 35 0 8564.9 0.261 -1 QRSWRWMW 8 21 626.2962036132812 NaN 0 626.2962036132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _QRSWRWM(Oxidation (M))W_ nc|ENSG00000213347|Q9BW11-4|MXD3 0.6014990680409731 0.38822285293237185 1 A 1 -1 4.6041 0 0 0.36816 0 0 583.2032265607437 593.3042086236936 1176.5074351844373 0 0 0 0 0 0 0 0 0 A 0.36816 - 2 + NaN NaN 97627.7 NaN 7098 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9603 47.65 NaN 55577 35 0 6444.3 0.263 + 30973 VRTLTVQY 8 41 490.2826843261719 NaN 0 490.2826843261719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VRTLTVQY_ ENSG00000132740|ENST00000255078|IGHMBP2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91812.4 NaN 7099 2502 9596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9605 47.655 NaN 1625000 35 0 167260 0.326 + 9773 HYKPTPLYF 9 102 583.3056984234008 1164.5968439136016 2 583.3059692382812 MULTI HCD FTMS 0 0 0 9604 954703.1875 0.8729995921687251 1 -0.03670501708984375 1 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 85.64151623876279 0.004640175941193596 1 [{I|L}P][TP]KYHY{M(Oxidation (M))|F} 9 6 + 60.908 0 0 5.23 5.23 83.018 0 0 0 2.7644139425106715 2.7644139425106715 2.7644139425106715 2.7644139425106715 0 0.5 1.6989700043360187 1.305462187404089 0 [{I|L}P][TP]KYHY{M(Oxidation (M))|F};HYK[TP]P{I|L}Y{M(Oxidation (M))|F};[{I|L}P][TP]KYH{M(Oxidation (M))|F}Y;[TP][HK]YP{I|L}Y{M(Oxidation (M))|F};[{I|L}P][TP]KYYH{M(Oxidation (M))|F};[{I|L}P]WAA{[QG]|[NA]}{I|L}Y{M(Oxidation (M))|F};[{I|L}P]Y[HK][TP]Y{M(Oxidation (M))|F};[{I|L}P][TP]{[WN]|[YH]}KY{M(Oxidation (M))|F};[TP][{I|L}P]KYHY{M(Oxidation (M))|F};{[WN]|[YH]}KY[TP]P{I|L}{M(Oxidation (M))|F} 5.23;4.9926;4.2397;3.8373;3.7481;3.7295;3.6467;3.305;3.2541;3.2162 -;+;-;-;-;-;-;-;-;- + 1359 NaN NaN 327897.4 NaN 7100 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9606 47.659 NaN 384890 35 0 75001 0.262 + 15913 LPLTEHEL 8 59 476.26084277123493 950.5071326092699 2 476.26092529296875 MULTI HCD FTMS 0 0 0 9604 226302.46875 0.4978407725742334 3 -0.093353271484375 2 Unmodified _LPLTEHEL_ ENSG00000172578|ENST00000341319|KLHL6 109.62928328672726 0.035128097911409736 1 {I|L}P{I|L}TEHE{I|L} 8 0 + 91.697 0 0 9.6472 9.6472 97.561 0 0 0 75.53416052774791 11.153565665482859 11.153565665482859 31.67780549770299 0 1.8243923658886185 1.6989700043360187 1.610924374808178 0 + + {I|L}P{I|L}TEHE{I|L};[{I|L}P]{I|L}TEHE{I|L};{[QN]|[E{I|L}]|[KN]}[TP]{I|L}HE{I|L};[VP][NS]E[VP]P{I|L};{[QN]|[E{I|L}]|[KN]}[TP]{[YC]|[HE]}{I|L}{I|L};[VP][NS][DP]{I|L}P{I|L} 9.6472;6.3145;1.4172;0.88678;0.14055;0.081058 +;+;-;-;-;- + 256 + NaN NaN 153867.4 NaN 7101 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9607 47.663 NaN 468520 35 0 26855 0.261 + 34234 YPDRIMNTF 9 84 586.7737018509798 1171.5328507687595 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9604 253856.34375 0.06340011126272896 -20 0.5795631408691406 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 121.50329630698991 0.001120265034723027 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 91.657 0 0 7.8237 7.8237 88.084 0 0 0 3.852620882336794 3.852620882336794 3.852620882336794 3.852620882336794 0 2.2856668758921828 1.3979400086720375 0.2614393726401688 0.7134679910804405 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 7.8237;7.4948;7.3327;7.0377;6.5467;6.5411;6.4857;5.9043;5.8232;5.7551 +;+;-;-;-;-;-;-;-;- + 2573 NaN NaN 152513.8 NaN 7102 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9608 47.667 NaN 614420 35 0 42131 0.261 + 18551 MVEELEKAL 9 83 539.2781713968017 1076.5417898604032 2 539.7927856445312 MULTI HCD FTMS 0 0 0 9604 37978.0390625 0.6055096621185662 -4 0.10956192016601562 4 Oxidation (M) _M(Oxidation (M))VEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 43.981846655682396 0.04706587046877104 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 8 7 51.547 0 0 4.7882 0 0 0 127.04306321821902 127.04306321821902 8.751064929780554 0 0 0 0 0 2 0 0.6421590589602533 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 4.7882 - 1005 NaN NaN 176809.7 NaN 7103 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9609 47.67 NaN 129290 35 0 26848 0.261 + 7062 FQMKYPFEI 9 40 601.7995457981389 NaN 0 601.779296875 PEAK HCD FTMS 0 0 0 9604 12395.564453125 1 0 0 5 Unmodified _FQMKYPFEI_ ENSG00000158485|ENST00000368168|CD1B;nc|ENSG00000158485|P29016-2|CD1B 3.944395688203298 0.27613285122220627 1 EVN 3 9 18.94 0 0 1.5763 0 0 131.13722593412632 725.2725313775999 856.4097573117263 0 0 0 0 0 0 0 0 0.4247425010840047 EVN 1.5763 - 13 + NaN NaN 100342.5 NaN 7104 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9610 47.673 NaN 81315 35 0 10926 0.261 + 6695 FPNQGEVKL 9 38 516.279615504842 1030.544678076484 2 516.28076171875 MULTI HCD FTMS 0 0 0 9604 19483.916015625 0.4559474295221032 8 -0.23730087280273438 6 Unmodified _FPNQGEVKL_ ENSG00000013392|ENST00000369724|RWDD2A 8.155526934196011 0.2891920862272901 1 V[K{I|L}] 3 6 17.007 0 0 1.6503 0 0 672.281541892775 0 672.281541892775 0 4.699915470362017 0 0 0 0.805462187404089 0 0 0 + V[K{I|L}] 1.6503 + + 17 NaN NaN 117345.9 NaN 7105 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9611 47.677 NaN 100510 35 0 9517.9 0.261 + -1 ECGCCLCW 8 49 572.6872679765527 NaN 0 572.6867065429688 PEAK HCD FTMS 0 0 0 9604 15621.5546875 0.509889544404376 -1 0.0265350341796875 7 4 Carbamidomethyl (C) _EC(Carbamidomethyl (C))GC(Carbamidomethyl (C))C(Carbamidomethyl (C))LC(Carbamidomethyl (C))W_ REV__ENSG00000186166|ENST00000334418|CENATAC;REV__ENST00000524670.5_1_11:118869052-118882689:+|nuORF;REV__ENST00000534656.2_1_11:118868886-118869820:+|nuORF 0.6903765706972694 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.61133 0 0 637.6299853165834 445.68696008853755 1083.316945405121 0 0 0 0 0 0 0 0 0 G 0.61133 + + 6 + NaN NaN 86597.9 NaN 7106 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9612 47.68 NaN 114230 35 0 12309 0.261 + -1 WDSLLWESPC 10 36 646.7839829689403 NaN 0 646.783935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _WDSLLWESPC(Carbamidomethyl (C))_ REV__ENSG00000178031|ENST00000380548|ADAMTSL1;REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF 1.4819007175156935 0.33891598740166873 1 V 1 -1 6.9897 0 0 0.54119 0 0 903.4151511412025 286.0411776178344 1189.456328759037 0 0 0 0 0 0 0 0 0 V 0.54119 - 3 + NaN NaN 108130.9 NaN 7107 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9613 47.683 NaN 40445 35 0 8791.6 0.261 + -1 WRNSVCSICP 10 32 639.79052734375 NaN 0 639.79052734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Carbamidomethyl (C) _WRNSVC(Carbamidomethyl (C))SIC(Carbamidomethyl (C))P_ REV__ENSG00000196576|ENST00000359337|PLXNB2;REV__ENST00000496720.1_1_22:50722364-50724624:-|nuORF 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91346.9 NaN 7108 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9614 47.687 NaN 37390 35 0 5730.8 0.261 + -1 QALSTPCEPID 11 26 615.7857666015625 NaN 0 615.7857666015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _QALSTPC(Carbamidomethyl (C))EPID_ REV__ENST00000352645.4_1_22:41754676-41754982:+|nuORF 1.0714618166137932 0.3390807148598227 1 M 1 -1 4.6041 0 0 0.37445 0 0 669.1921921857437 426.30002771549067 1095.4922199012344 0 0 0 0 0 0 0 0 0 M 0.37445 - 2 + NaN NaN 92727 NaN 7109 2503 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9616 47.691 NaN 1295800 35 0 158430 0.327 + 550 APEEHPVLL 9 103 502.7741653025147 1003.5337776718294 2 502.7743225097656 MULTI HCD FTMS 0 0 0 9615 662998.5 0.006358448719138916 48 -1.3837089538574219 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 125.62461146993168 0.0008703235425492373 1 APEEHPV{I|L}{I|L} 9 0 + 66.038 0 0 6.5806 6.5806 86.405 0 0 0 4.843997335293139 4.843997335293139 4.843997335293139 4.843997335293139 0 2.7689301784845295 0 0.850576203518622 0 + + APEEHPV{I|L}{I|L};[PA]EEHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[PA]EEH{I|L}[VP]{I|L};[VP]DDH{I|L}[VP]{I|L};[EP]AEH{I|L}[VP]{I|L};[EP]EAH{I|L}[VP]{I|L};[VP]{I|L}AHE[EP]{I|L} 6.5806;6.0979;5.85;5.0987;4.7746;3.5246;3.2767;2.5254;2.2013;2.0755 +;+;-;-;-;-;-;-;-;- + 750 + NaN NaN 297641 NaN 7110 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9617 47.696 NaN 624990 35 0 54408 0.261 -1 VYKTIMEQF 9 96 587.7937141530424 1173.5728753728847 2 588.3085327148438 MULTI HCD FTMS 0 0 0 9615 35977.05078125 0.4178979591429297 7 -0.20059585571289062 2 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ BAIAP2-TBCD|1|fusion;ENSG00000175866|ENST00000428708|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2 28.494509381512117 0.11816142465008336 1 YVKE{I|L}{M(Oxidation (M))|F}N 7 -1 53.413 0 0 4.5513 0 0 0 277.08295618228755 277.08295618228755 -3.477182587605654 0 -3.477182587605654 0 0 0.7614393726401688 1.154901959985743 0.3807196863200844 0.5044321917401079 YVKE{I|L}{M(Oxidation (M))|F}N 4.5513 - 2093 + NaN NaN 194702.5 NaN 7111 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9618 47.7 NaN 400450 35 0 122870 0.261 + 2212 DISPPIFRR 9 63 550.814076738771 1099.6136005443418 2 550.8143920898438 MULTI HCD FTMS 0 0 0 9615 141943.21875 0.6833606358157266 -3 0.09314346313476562 3 Unmodified _DISPPIFRR_ ENSG00000155926|ENST00000338087|SLA;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-4|SLA;nc|ENSG00000155926|Q13239-5|SLA 53.832793166522166 0.026208976789938845 1 D{I|L}SP 4 5 58.175 0 0 5.2905 0 0 0 684.3917330377561 684.3917330377561 32.271212547196626 0 0 0 0 0.3494850021680094 2 0.4247425010840047 0 + D{I|L}SP 5.2905 + + 199 + NaN NaN 150458.3 NaN 7112 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9619 47.703 NaN 212430 35 0 15805 0.263 + 35429 YYEKLHTYF 9 54 421.8729716370388 1262.5970855113164 3 421.87347412109375 MULTI HCD FTMS 0 0 0 9615 118240.3359375 0.11401709293279125 18 -0.5174903869628906 4 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 28.494509381512117 0.11816142465008336 1 YY 2 7 45.217 0 0 3.5812 0 0 0 933.4459206504805 933.4459206504805 20.154856465551987 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5812 + + 18 + NaN NaN 121063.6 NaN 7113 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9620 47.707 NaN 425680 35 0 73833 0.261 + 4160 ETPQVAVIVR 10 60 556.3270505695367 1110.6395482058733 2 556.3272094726562 MULTI HCD FTMS 0 0 0 9615 123578.4140625 0.6885262577827922 -1 0.03670501708984375 5 Unmodified _ETPQVAVIVR_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000493299.1_1_3:184038318-184039070:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 63.227496030279354 0.029684053017782965 1 {[ET]|[MV]}[QP]VAV{I|L}VR 10 0 + 52.471 0 0 4.7244 4.7244 90.678 0 0 0 23.865006360318684 15.026975159433526 15.026975159433526 52.47093142085326 0 1.7856668758921828 0 0 0 + + {[ET]|[MV]}[QP]VAV{I|L}VR 4.7244 + + 116 + NaN NaN 159086.1 NaN 7114 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9621 47.71 NaN 115030 35 0 23655 0.261 + 30661 VPDSPENEL 9 38 500.23528151491735 998.4560100966347 2 500.235107421875 MULTI HCD FTMS 0 0 0 9615 72268.3828125 0.9449413397694493 1 -0.03334808349609375 6 Unmodified _VPDSPENEL_ ENSG00000132849|ENST00000642238|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;nc|ENSG00000132849|Q8NI35|PATJ 24.990960013464015 0.14443998892849796 1 S[EP]NE{I|L} 6 3 40.718 0 0 4.0781 0 0 311.1483631818375 0 311.1483631818375 0 40.718421963928435 0 0 0 0.805462187404089 0 0 0.4247425010840047 + S[EP]NE{I|L} 4.0781 + + 13 NaN NaN 103140.1 NaN 7115 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9622 47.713 NaN 76758 35 0 7958.3 0.261 -1 ADKMDMSL 8 25 492.70412209824383 983.3936912632877 2 492.7041931152344 MULTI HCD FTMS 0 0 0 9615 65500.1875 0.6897071862445929 15 -0.4144172668457031 7 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 10.073929032068715 0.5196730168178844 1 S{I|L} 2 -1 29.776 0 0 3.0279 0 0 765.2674427716812 0 765.2674427716812 0 29.776296993281406 0 0 0 0.5 0 0.3807196863200844 0 S{I|L} 3.0279 + + 4 NaN NaN 99505.5 NaN 7116 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9623 47.717 NaN 59575 35 0 7850.6 0.261 + 12617 KVPPAINQF 9 30 507.29204982898204 NaN 0 507.2929992675781 PEAK HCD FTMS 0 0 0 9615 17878.23828125 0.3128582290496267 -7 0.20941925048828125 8 Unmodified _KVPPAINQF_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF 6.723162845929126 0.26266733336404485 1 N 1 8 7.4743 0 0 0.73815 0 0 491.3553876444891 404.15705286197505 895.5124405064641 0 0 0 0 0 0.5 0 0 0 + N 0.73815 + + 4 + NaN NaN 93697.7 NaN 7117 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9624 47.72 NaN 147730 35 0 17245 0.261 + 24732 RYLVISEKL 9 66 560.8397750929485 1119.6649972526968 2 560.8390502929688 MULTI HCD FTMS 0 0 0 9615 25181.392578125 0.012982428073760138 36 -1.0425834655761719 9 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 19.361941925380144 0.1930734562688509 1 {I|L}SEK{I|L} 5 4 38.469 0 0 3.4358 0 0 531.3167591779312 0 531.3167591779312 0 31.479400086720375 0 0 0 0.75 0 0 0 + {I|L}SEK{I|L} 3.4358 + + 50 NaN NaN 109481.2 NaN 7118 2504 9615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9626 47.725 NaN 1723700 35 0 242030 0.326 + 10534 IPHMDIEAL 9 88 527.7654511237239 1053.5163493142477 2 527.765625 MULTI HCD FTMS 0 0 0 9625 921747.75 1 0 0 1 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 74.42276476219924 0.007657080072768255 1 EYDEA{I|L}{I|L} 7 6 51.222 0 0 4.862 0 0 202.13179213691564 0 202.13179213691564 0 18.591444694250683 0 0 0 0.9247425010840047 0 1.1989700043360187 0 EYDEA{I|L}{I|L} 4.862 - 1857 NaN NaN 341979.8 NaN 7119 2505 9625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9627 47.729 NaN 832880 35 0 85140 0.261 + 8350 GYIESVQHI 9 71 523.2693540348613 1044.5241551365225 2 523.2694702148438 MULTI HCD FTMS 0 0 0 9625 339243.03125 0.5994396096362007 -3 0.096588134765625 2 Unmodified _GYIESVQHI_ ENSG00000125871|ENST00000377710|MGME1 160.51597146486608 8.986712039288196E-09 1 [YG]{I|L}ESVQH{I|L} 9 0 + 112.74 0 0 10.794 10.794 94.187 0 0 0 6.963950151760656 6.963950151760656 6.963950151760656 9.208187539523749 0 2.8494850021680094 2 1.7416440611282624 0 + + [YG]{I|L}ESVQH{I|L};[YG]{I|L}ESV[AG]H{I|L};[YG]{I|L}TDVQH{I|L};[YG]E{I|L}SVQH{I|L};[YG]{I|L}TDV[AG]H{I|L};[YG]E{I|L}SV[AG]H{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SVQH{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SV[AG]H{I|L};{[QN]|[E{I|L}]|[KN]}H[KG]{M(Oxidation (M))|F}{I|L}{[DS]|[MA]|[CV]|TT};{[QN]|[E{I|L}]|[KN]}[YV][SG]QH{I|L} 10.794;9.9123;9.547;9.5061;8.6654;8.6245;6.1266;5.245;2.7684;2.6737 +;-;-;-;-;-;-;-;-;- + 886 NaN NaN 210666.3 NaN 7120 2505 9625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9628 47.733 NaN 320910 35 0 29148 0.261 + 18195 MPDLPEKL 8 67 479.7494054996792 957.4842580661584 2 479.7492980957031 MULTI HCD FTMS 0 0 0 9625 207626.546875 0.6760835496279177 -11 0.3417396545410156 3 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 55.50274090549119 0.09370106398411177 1 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 49.289 0 0 5.1478 5.1478 81.936 0 0 0 0.7176773740030882 0.7176773740030882 0.7176773740030882 0.7176773740030882 0 1.9604093769761874 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P[K{I|L}]E 5.1478;5.0728;1.899 +;+;- + 165 + NaN NaN 132787.5 NaN 7121 2505 9625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9629 47.736 NaN 276670 35 0 45695 0.261 -1 LPDQDEMDL 9 74 546.231604285191 1090.448655637182 2 546.2320556640625 MULTI HCD FTMS 0 0 0 9625 156896.5625 0.7747498361019761 2 -0.056613922119140625 4 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 28.494509381512117 0.11816142465008336 1 {NN|[MP]|[D{I|L}]|[EV]}[QP]DE{M(Oxidation (M))|F}D{I|L} 9 -1 + 61.99 0 0 5.6848 5.6848 91.716 0 0 0 12.526042185661325 35.792104754538045 12.526042185661325 36.63786753388136 0 1.5 1.2218487496163564 0 0.28872548999643577 {NN|[MP]|[D{I|L}]|[EV]}[QP]DE{M(Oxidation (M))|F}D{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[NS]{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YQ]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.6848;2.3249;0.50708 -;-;- 105 NaN NaN 123406.8 NaN 7122 2505 9625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9630 47.74 NaN 177560 35 0 14023 0.262 + 26225 SPVKISEI 8 56 436.75835048375353 871.5021480343071 2 436.7581787109375 MULTI HCD FTMS 0 0 0 9625 53854.4296875 0.7242442593591478 1 -0.0233001708984375 5 Unmodified _SPVKISEI_ ENSG00000168994|ENST00000380283|PXDC1 28.486842064014134 0.3788298654084067 1 SPP{I|L}RR{M(Oxidation (M))|F} 7 5 + 61.814 0 0 7.0929 7.0929 93.241 0 0 0 41.01760190183931 12.089701598318001 12.089701598318001 22.245462655597095 0 0.3807196863200844 1.6989700043360187 0 0.7742275032520141 SPP{I|L}RR{M(Oxidation (M))|F};SP[R{I|L}][RP]{M(Oxidation (M))|F} 7.0929;4.5403 -;- 27 + NaN NaN 101938.2 NaN 7123 2505 9625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9631 47.743 NaN 178520 35 0 60689 0.261 -1 TYIQKIFRM 9 39 405.88970204458815 1214.6472767339644 3 405.89013671875 MULTI HCD FTMS 0 0 0 9625 51500.6640625 0.6349770151302129 3 -0.08681488037109375 6 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 10.799506525563784 0.2670509983294061 1 TY 2 -1 45.217 0 0 3.7226 0 0 0 947.5136173109353 947.5136173109353 21.660006443871893 0 0 0 0 0.4247425010840047 2 0 0 TY 3.7226 + + 19 + NaN NaN 107795.5 NaN 7124 2505 9625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9633 47.748 NaN 1541100 35 0 155250 0.327 + 6683 FPNKQGYVL 9 107 533.2898697829738 1064.5651866327476 2 533.2901000976562 MULTI HCD FTMS 0 0 0 9632 965762.5625 0.9956388210583506 2 -0.06351470947265625 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 120.45040980043947 0.0012363446172167195 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 85.757 0 0 8.0556 8.0556 91.519 0 0 0 14.054004937348338 14.09256854528806 14.054004937348338 9.208187539523749 0 1.8494850021680094 1.6989700043360187 0.5796896906561032 1.1956290139465233 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGVY{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}[AG]GYV{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L} 8.0556;7.1906;7.1906;6.7354;6.6527;6.3297;6.1637;5.8704;5.8307;5.5754 +;-;-;-;-;-;-;-;-;- + 4637 NaN NaN 313519.2 NaN 7125 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9634 47.753 NaN 245270 35 0 17579 0.261 + 24197 RYFKGPELL 9 67 561.8212326354909 1121.6279123377817 2 561.81787109375 MULTI HCD FTMS 0 0 0 9632 72487.1171875 0.08231478189093624 -5 0.14979171752929688 2 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 43.77239144664712 0.04802738721622131 1 [YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L} 9 2 + 55.779 0 0 4.973 4.973 81.736 0 0 0 4.151051905782474 16.478174818886373 4.151051905782474 0.8990283210799532 0 0.5451140161145328 0 0.3494850021680094 0 [YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L};[YR]{M(Oxidation (M))|F}KG[EP]{I|L}{I|L};[YR]{M(Oxidation (M))|F}K{I|L}GPE{I|L};[EP]G{I|L}VVG{I|L}PE{I|L};[EP]G{I|L}VVG[EP]{I|L}{I|L};[EP]G{I|L}VV{I|L}GPE{I|L};[EP]{I|L}GVVG{I|L}PE{I|L};{[QN]|[E{I|L}]|[KN]}PVRG{I|L}PE{I|L};[EP]{I|L}GVVG[EP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}PVRG[EP]{I|L}{I|L} 4.973;4.8929;4.7594;4.6029;4.5228;4.3893;4.0662;4.0565;3.986;3.9763 -;+;-;-;-;-;-;-;-;- + 1016 NaN NaN 131660.5 NaN 7126 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9635 47.756 NaN 182220 35 0 35312 0.263 + 7 AAEVKHLL 8 41 440.76609217268026 879.5176314121605 2 440.7661437988281 MULTI HCD FTMS 0 0 0 9632 91884.375 0.2794614244292226 -6 0.17625045776367188 3 Unmodified _AAEVKHLL_ ENST00000381279.3_1_6:139981105-139981588:+|nuORF 15.847184025352803 0.47719562709667024 1 [HS]VA[Q{I|L}]{I|L}{I|L} 8 6 + 39.385 0 0 4.4781 4.4781 88.4 0 0 0 20.541134294324124 8.416375079047498 8.416375079047498 19.71971276399756 0 1 0 0 0 [HS]VA[Q{I|L}]{I|L}{I|L};[QP]{[QN]|[E{I|L}]|[KN]}[PA]{I|L}{I|L} 4.4781;2.236 -;- 55 + NaN NaN 112698 NaN 7127 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9636 47.76 NaN 96058 35 0 12918 0.261 -1 RDALAQEYLM 10 38 613.298015310772 1224.581477688344 2 613.2981567382812 MULTI HCD FTMS 0 0 0 9632 44768.19140625 0.8429393242044169 -1 0.0233001708984375 4 Oxidation (M) _RDALAQEYLM(Oxidation (M))_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 27.088373467376528 0.2577365110389662 1 AQEY{I|L}{M(Oxidation (M))|F} 6 -1 65.394 0 0 5.3401 0 0 455.24824721504064 0 455.24824721504064 0 59.90926274548464 0 0 0 2.274227503252014 0 0 0 AQEY{I|L}{M(Oxidation (M))|F} 5.3401 + + 48 NaN NaN 98159.9 NaN 7128 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9637 47.763 NaN 65779 35 0 13392 0.261 + 19387 NPEPHLQHR 9 28 564.2900926694734 1126.5656324057468 2 564.2904663085938 MULTI HCD FTMS 0 0 0 9632 19555.1171875 0.17153210715127887 4 -0.11689376831054688 5 Unmodified _NPEPHLQHR_ ENSG00000221843|ENST00000447166|C2orf16 2.9952420565917617 0.3283108881486655 1 {I|L}Q[RH] 4 5 12.307 0 0 1.0924 0 0 574.2409535138687 0 574.2409535138687 0 6.822581265925436 0 0 0 0 0 0 0 + {I|L}Q[RH] 1.0924 + + 11 NaN NaN 99804.3 NaN 7129 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9638 47.766 NaN 62429 35 0 6807.2 0.261 -1 HFIAEHYMF 9 35 605.7706958354203 1209.5268387376404 2 605.7716064453125 MULTI HCD FTMS 0 0 0 9632 36929.921875 0.3080181830574263 15 -0.4309501647949219 6 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 25.399314129420986 0.14091189997036632 1 H{M(Oxidation (M))|F}{I|L} 3 -1 26.682 0 0 2.206 0 0 0 809.2950533502561 809.2950533502561 -2.2577249674798594 0 -2.2577249674798594 0 0 0.5 0 0 0 H{M(Oxidation (M))|F}{I|L} 2.206 + + 8 + NaN NaN 100356.5 NaN 7130 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9639 47.77 NaN 145020 35 0 28393 0.264 + 12070 KKAQSGGR 8 39 416.2436670485999 NaN 0 416.2435607910156 PEAK HCD FTMS 0 0 0 9632 37994.09375 0.2820602881591661 45 -1.2973861694335938 7 Unmodified _KKAQSGGR_ ENST00000561606.1_1_5:10353444-10353579:-|nuORF;nc|ENSG00000259802|P0DW81|MARCHF6-DT 2.302733041254933 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 8 0.71334 0 0 0.085895 0 0 290.2624062634123 377.14377771549067 667.406183978903 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.085895 - 1 + NaN NaN 121614.5 NaN 7131 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9640 47.773 NaN 64865 35 0 11108 0.261 + 33462 YHFKCYVA 8 43 515.7458247267755 1029.4770965203509 2 515.7460327148438 MULTI HCD FTMS 0 0 0 9632 10562.2197265625 0.32963519119714146 6 -0.18421554565429688 8 Unmodified _YHFKCYVA_ REV__ENSG00000121691|ENST00000241052|CAT 5.230669730166228 0.5342319408533849 1 Y{[VA]|[{I|L}G]} 3 -1 15.458 0 0 1.5015 0 0 678.2968006818375 0 678.2968006818375 0 11.389530984084217 0 0 0 0.5 0 0 0 Y{[VA]|[{I|L}G]} 1.5015 + + 7 NaN NaN 94289.1 NaN 7132 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9641 47.777 NaN 129900 35 0 20924 0.261 + 26332 SSCLLAEPGL 10 53 495.25216084997214 988.4897687667443 2 495.25213623046875 MULTI HCD FTMS 0 0 0 9632 23913.228515625 0.5516714371118587 3 -0.09358596801757812 9 Unmodified _SSCLLAEPGL_ REV__ENST00000592495.1_1_19:11959764-11960064:+|nuORF 10.073929032068715 0.4168838835836452 1 EP{[VA]|[{I|L}G]} 4 -1 14.609 0 0 1.4779 0 0 574.2795769716256 0 574.2795769716256 0 7.6190258766229135 0 0 0 0.9247425010840047 0 0 0 EP{[VA]|[{I|L}G]} 1.4779 + + 20 + NaN NaN 108893.1 NaN 7133 2506 9632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9643 47.781 NaN 1234300 35 0 175100 0.327 -1 MPETTETVL 9 58 518.7471070197194 1035.4796611062386 2 518.7472534179688 MULTI HCD FTMS 0 0 0 9642 443436.5 0.4882996061729193 -4 0.12666702270507812 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}TV{I|L} 4 -1 37.155 0 0 3.5882 0 0 557.2122669904312 0 557.2122669904312 0 32.55063163131986 0 0 0 0.3494850021680094 0 0.7742275032520141 0 {M(Oxidation (M))|F}TV{I|L} 3.5882 - 39 NaN NaN 278625.2 NaN 7134 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9644 47.786 NaN 885890 35 0 122840 0.261 + 24859 RYQDIIHSI 9 70 572.8087967908872 1143.6030406485743 2 572.8091430664062 MULTI HCD FTMS 0 0 0 9642 326183.59375 0.25404456050446195 -4 0.12666702270507812 2 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 76.82478488871298 0.006879825292024087 1 [YR]QD{I|L}{I|L}HS{I|L} 9 0 + 68.736 0 0 6.0105 6.0105 88.61 0 0 0 18.08976768583954 46.798114986366045 18.08976768583954 9.208187539523756 0 1.5484550065040281 1.0457574905606752 0.3807196863200844 0.9143943297944485 + + [YR]QD{I|L}{I|L}HS{I|L};[YR][AG]D{I|L}{I|L}HS{I|L};[YR][PG]{[DS]|[MA]|[CV]|TT}{I|L}HS{I|L};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}T][KG]{I|L}HS{I|L};[H{I|L}][DV][NP]{I|L}HS{I|L};[H{I|L}]{I|L}[YE][RN]S{I|L} 6.0105;5.2053;4.7609;3.3681;3.3284;1.6295 +;-;-;-;-;- + 327 NaN NaN 214622.8 NaN 7135 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9645 47.79 NaN 178550 35 0 22404 0.261 + 34213 YPDPYGGEKL 10 43 569.7743913034163 1137.5342296736326 2 569.7744750976562 MULTI HCD FTMS 0 0 0 9642 91273.734375 0.08939269966635811 11 -0.3045921325683594 3 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 21.590151480376914 0.30916502439568466 1 YPD 3 7 46.911 0 0 4.1239 0 0 0 759.3676294111427 759.3676294111427 31.55910029718697 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 + YPD 4.1239 + + 119 + NaN NaN 115102.6 NaN 7136 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9646 47.793 NaN 303630 35 0 63231 0.262 -1 KYMGIPQIRQL 11 46 454.9235763026195 1361.7488995080585 3 454.9237060546875 MULTI HCD FTMS 0 0 0 9642 28273.271484375 0.3949464832913957 3 -0.08358001708984375 4 Oxidation (M) _KYM(Oxidation (M))GIPQIRQL_ ENSG00000141252|ENST00000437048|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53 21.799462835604743 0.267142977351036 1 Y{I|L} 2 -1 20.445 0 0 1.5014 0 0 1067.5911674297365 0 1067.5911674297365 0 9.447055689656665 0 0 0 0.4247425010840047 0 0 0 Y{I|L} 1.5014 - 14 + NaN NaN 124283.4 NaN 7137 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9647 47.797 NaN 284010 35 0 52815 0.261 + 14484 LFAETFKRHLI 11 56 458.9344834295646 1373.7816208888937 3 458.93499755859375 MULTI HCD FTMS 0 0 0 9642 99334.4609375 0.8989107358826675 3 -0.08358001708984375 5 Unmodified _LFAETFKRHLI_ ENST00000526600.1_1_11:12965683-12965947:+|nuORF 9.764250979337305 0.37200617284565546 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 33.258 0 0 2.4209 0 0 982.5341969369664 0 982.5341969369664 0 19.54628427264403 0 0 0 0.7059771852360797 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.4209 - 36 NaN NaN 141501 NaN 7138 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9648 47.8 NaN 246770 35 0 18185 0.261 + -1 SMIMPYRL 8 62 513.7584697223768 1025.5023865115536 2 513.7496948242188 MULTI HCD FTMS 0 0 0 9642 12929.833984375 0.20266804250788514 5 -0.15090179443359375 6 Oxidation (M) _SMIM(Oxidation (M))PYRL_ REV__nc|ENSG00000181282|Q8NH89|OR5AK3P 21.74664581756881 0.4337896562907935 1 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}EYR 7 -1 39.402 0 0 3.8423 0 0 0 128.08836331719877 128.08836331719877 16.38698526850746 0 0 0 0 1 1.5228787452803376 0.3494850021680094 0 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}EYR 3.8423 - 335 NaN NaN 116079.1 NaN 7139 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9649 47.803 NaN 54174 35 0 5263.4 0.261 + 4309 EVSDVEIITR 10 39 580.8115329208747 1159.6085129085493 2 580.8120727539062 MULTI HCD FTMS 0 0 0 9642 23919.85546875 0.3587690884609206 4 -0.11063385009765625 7 Unmodified _EVSDVEIITR_ ENSG00000198000|ENST00000442668|NOL8;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8 8.444304893310646 0.4306066564229251 1 {NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}VE{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 17.905 0 0 1.544 1.544 85.493 0 0 0 1.7069622716897435 0.7648373010427143 0.7648373010427143 13.521825181113627 0 0 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}VE{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}V][DC]{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.544;0.37797 +;- + 51 + NaN NaN 95138.3 NaN 7140 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9650 47.807 NaN 60881 35 0 7353 0.262 + 11739 KDHVDQLI 8 37 484.2640012823278 966.5134496314556 2 484.2650146484375 MULTI HCD FTMS 0 0 0 9642 6925.0966796875 0.07432994967956139 6 -0.17102813720703125 8 Unmodified _KDHVDQLI_ REV__ENSG00000155561|ENST00000285968|NUP205 3.5964929083625545 0.5366564765791996 1 {I|L}{I|L} 2 -1 20.969 0 0 2.1696 0 0 722.3344593732437 0 722.3344593732437 0 5.484550065040281 0 0 0 0 0 0 0 {I|L}{I|L} 2.1696 + + 7 NaN NaN 99513.1 NaN 7141 2507 9642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9652 47.812 NaN 942530 35 0 102910 0.327 + 9774 HYKPTPLYF 9 92 583.3056984234008 1164.5968439136016 2 583.3059692382812 MULTI HCD FTMS 0 0 0 9651 507392.6875 0.463969969993311 6 -0.16129684448242188 1 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 66.45667989310934 0.010234776021261575 1 [{I|L}P][TP]KYHY{M(Oxidation (M))|F} 9 6 + 56.933 0 0 4.8887 4.8887 83.315 0 0 0 4.661450971016166 4.661450971016166 4.661450971016166 4.661450971016166 0 0.5 1.6989700043360187 1.2302046884880937 0 [{I|L}P][TP]KYHY{M(Oxidation (M))|F};HYK[TP]P{I|L}Y{M(Oxidation (M))|F};[{I|L}P]Y[HK][TP]Y{M(Oxidation (M))|F};[{I|L}P][TP]{[WN]|[YH]}KY{M(Oxidation (M))|F};[{I|L}P][TP]KYYH{M(Oxidation (M))|F};[TP][{I|L}P]KYHY{M(Oxidation (M))|F};[{I|L}P]Y[HK]Y[TP]{M(Oxidation (M))|F};[{I|L}P]Y[YT][KP]H{M(Oxidation (M))|F};[TP][{I|L}P]{[WN]|[YH]}KY{M(Oxidation (M))|F};[TP][{I|L}P]KYYH{M(Oxidation (M))|F} 4.8887;4.4884;3.8406;3.7918;3.5188;2.9128;2.6746;2.4209;1.816;1.543 -;+;-;-;-;-;-;-;-;- + 882 NaN NaN 221381.9 NaN 7142 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9653 47.816 NaN 578410 35 0 41392 0.261 + 18552 MVEELEKAL 9 95 539.2781713968017 1076.5417898604032 2 539.7927856445312 MULTI HCD FTMS 0 0 0 9651 38055.0625 0.6067376990780069 1 -0.030071258544921875 2 Oxidation (M) _M(Oxidation (M))VEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 57.24910588100465 0.021429789259086996 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 8 7 49.32 0 0 4.5814 0 0 0 127.04523346521172 127.04523346521172 0.1675710732983049 0 0 0 0 0 2 0.3494850021680094 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 4.5814 - 1090 NaN NaN 185100.5 NaN 7143 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9654 47.82 NaN 520930 35 0 29730 0.261 + 34235 YPDRIMNTF 9 79 586.7737018509798 1171.5328507687595 2 586.7742919921875 MULTI HCD FTMS 0 0 0 9651 261816.09375 0.06538804281554644 -15 0.4482536315917969 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 117.83759599426817 0.001662893820975323 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 86.217 0 0 7.3593 7.3593 88.316 0 0 0 10.840970627320331 10.840970627320331 10.840970627320331 6.064921830680703 0 1.860924374808178 1.3979400086720375 0.28872548999643577 0.566901560044258 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 7.3593;6.8416;6.5733;6.4339;6.1567;6.0556;5.648;5.6141;5.3707;5.0461 +;-;-;+;-;-;-;-;-;- + 2537 NaN NaN 189484.1 NaN 7144 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9655 47.823 NaN 270700 35 0 40164 0.262 + 31479 VYERELQTF 9 55 592.800791867467 1183.5870308017338 2 592.8011474609375 MULTI HCD FTMS 0 0 0 9651 95733.6015625 0.5208364750672282 2 -0.053379058837890625 4 Unmodified _VYERELQTF_ ENSG00000203791|ENST00000368836|EEF1AKMT2 74.19965305603844 0.007729275404663812 1 [YV]ERE{I|L}QT{M(Oxidation (M))|F} 9 0 + 67.246 0 0 5.6815 5.6815 87.413 0 0 0 18.177959224778135 27.196596782814808 18.177959224778135 9.208187539523749 0 1.6677353201839438 1.5228787452803376 0.4247425010840047 0 + + [YV]ERE{I|L}QT{M(Oxidation (M))|F};[YV]ERE{I|L}[AG]T{M(Oxidation (M))|F};[YV]ERA{NN|[MP]|[D{I|L}]|[EV]}AT{M(Oxidation (M))|F};[YV]ERE{I|L}N[YV];[YV]ERE{I|L}GG[YV] 5.6815;4.9036;3.2103;3.1672;2.3893 +;-;-;-;- + 251 NaN NaN 136270.8 NaN 7145 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9656 47.827 NaN 77673 35 0 18063 0.261 -1 WQHMETIEL 9 35 601.7791386629317 1201.5437243926633 2 601.7794189453125 MULTI HCD FTMS 0 0 0 9651 50411.03125 0.22908311328363615 26 -0.7473487854003906 5 Oxidation (M) _WQHM(Oxidation (M))ETIEL_ ENSG00000107186|ENST00000319217|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-5|MPDZ 14.838274106304384 0.23215694253501695 1 VE{I|L} 3 -1 30.445 0 0 2.5338 0 0 842.3372669904312 0 842.3372669904312 0 23.455612550363796 0 0 0 0.4247425010840047 0 0 0 VE{I|L} 2.5338 - 10 NaN NaN 103569.2 NaN 7146 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9657 47.83 NaN 136220 35 0 30334 0.263 + 33352 YGFYGDII 8 35 474.228567313456 946.442581693712 2 474.2286071777344 MULTI HCD FTMS 0 0 0 9651 65298.98828125 0.7921136258657007 -3 0.08681488037109375 6 Unmodified _YGFYGDII_ ENSG00000100422|ENST00000216264|CERK;nc|ENSG00000100422|Q8TCT0-2|CERK 13.50788311687929 0.4944073034352369 1 [{M(Oxidation (M))|F}V][PS]EQQ{I|L} 8 7 + 31.872 0 0 3.3676 3.3676 88.205 0 0 0 8.16061246681059 16.63303128443836 8.16061246681059 31.871987629411294 0 0 2 0.4247425010840047 0 [{M(Oxidation (M))|F}V][PS]EQQ{I|L} 3.3676 - 37 NaN NaN 99696.8 NaN 7147 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9658 47.833 NaN 191400 35 0 49451 0.262 + 31547 VYGSFASKL 9 57 486.26343329969205 970.5123136661841 2 486.2633056640625 MULTI HCD FTMS 0 0 0 9651 107985.78125 1 0 0 7 Unmodified _VYGSFASKL_ ENSG00000155096|ENST00000337198|AZIN1 69.33821966488729 0.009302356455414924 1 VYGS{M(Oxidation (M))|F}ASK{I|L} 9 0 + 87.208 0 0 8.9857 8.9857 91.867 0 0 0 69.24894257273584 8.384767769392738 8.384767769392738 8.570210375987259 0 2.7376954943324545 2 0.4247425010840047 0 + + VYGS{M(Oxidation (M))|F}ASK{I|L};[YV]GS{M(Oxidation (M))|F}ASK{I|L};VY[YQ]ASK{I|L};[YV][YQ]ASK{I|L};VYGQ[YT]K{I|L};VYG[AG][YT]K{I|L} 8.9857;8.1027;6.6814;6.1439;5.6523;4.698 +;+;-;-;-;- + 180 + NaN NaN 120536.5 NaN 7148 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9659 47.837 NaN 301770 35 0 22760 0.261 + 14705 LHCLPPSKP 9 66 496.27278288746174 990.5310128417235 2 496.2718811035156 MULTI HCD FTMS 0 0 0 9651 45420.36328125 0.3528917050754181 -2 0.06351470947265625 8 Unmodified _LHCLPPSKP_ ENST00000361483.4_1_12:111798605-111799217:-|nuORF 19.256988751693697 0.19398022840297344 1 [EP]G{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L} 9 7 + 56.806 0 0 5.7349 5.7349 86.586 0 0 0 9.018637558036673 11.082268588648247 9.018637558036673 9.018637558036673 0 2.3494850021680094 0 0.6989700043360187 0 [EP]G{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};[PG]E{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};{[QN]|[E{I|L}]|[KN]}[PG]K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};[EP]G{M(Oxidation (M))|F}[K{I|L}]{[MG]|[TS]}{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}[QA]{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}GAA{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}[KS]P;[PG]E{M(Oxidation (M))|F}[K{I|L}]{[MG]|[TS]}{I|L};{[QN]|[E{I|L}]|[KN]}[PG]VV{I|L}G[HA];{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}R{I|L} 5.7349;4.8244;3.3681;2.3817;2.2667;2.1351;1.4811;1.4712;0.90555;0.27016 -;-;-;-;-;-;-;-;-;- 234 NaN NaN 131563.9 NaN 7149 2508 9651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9661 47.842 NaN 538320 35 0 99223 0.327 + 25976 SPDSEVTSL 9 56 467.7218056345137 933.4290583358274 2 467.72174072265625 MULTI HCD FTMS 0 0 0 9660 294649.65625 0.5082586740388554 -3 0.09358596801757812 1 Unmodified _SPDSEVTSL_ ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8 71.13359017698441 0.008721403657255008 1 VTS{I|L} 4 5 54.993 0 0 5.8915 0 0 515.1858828419108 0 515.1858828419108 0 30.255762612236907 0 0 0 1.5 0 0.805462187404089 0 + VTS{I|L} 5.8915 + + 59 NaN NaN 167930.5 NaN 7150 2509 9660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9662 47.846 NaN 303070 35 0 96623 0.262 + 2213 DISPPIFRR 9 54 550.814076738771 1099.6136005443418 2 550.8143310546875 MULTI HCD FTMS 0 0 0 9660 125728.5546875 0.6052979904786213 2 -0.05036163330078125 2 Unmodified _DISPPIFRR_ ENSG00000155926|ENST00000338087|SLA;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-4|SLA;nc|ENSG00000155926|Q13239-5|SLA 49.93300154707207 0.03166451819912738 1 D{I|L}SP 4 5 53.22 0 0 4.8398 0 0 0 684.3950319226619 684.3950319226619 39.72479721008234 0 0 0 0 0.3054621874040891 1.3979400086720375 0.4247425010840047 0 + D{I|L}SP 4.8398 + + 122 + NaN NaN 127011.9 NaN 7151 2509 9660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9663 47.85 NaN 403640 35 0 87613 0.262 -1 LCMPNVLKLYL 11 58 455.25405593363234 1362.740338401097 3 455.2539978027344 MULTI HCD FTMS 0 0 0 9660 119024.9375 1 0 0 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))MPNVLKLYL_ ENSG00000070601|ENST00000377765|FRMPD1;nc|ENSG00000070601|Q5SYB0-3|FRMPD1 4.406150317652783 0.39959678800402487 1 A[WQ]Y{I|L} 5 -1 32.218 0 0 2.3642 0 0 683.4003858637908 0 683.4003858637908 0 25.228787452803374 0 0 0 1 0 0 0 A[WQ]Y{I|L} 2.3642 - 28 + NaN NaN 156239.6 NaN 7152 2509 9660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9664 47.853 NaN 222870 35 0 25228 0.261 + 26422 STGAYCGMGEN 11 51 545.2026577128992 1088.3907624925982 2 545.2029418945312 MULTI HCD FTMS 0 0 0 9660 93375.15625 0.8438873203318041 -2 0.060272216796875 4 Unmodified _STGAYCGMGEN_ ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4;SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant 2.9952420565917617 0.40578455234410343 1 QV{I|L} 3 11 13.02 0 0 1.1963 0 0 730.1834583966812 0 730.1834583966812 0 5.061668675368626 0 0 0 0 0 0 0 QV{I|L} 1.1963 - 15 NaN NaN 119756.5 NaN 7153 2509 9660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9665 47.857 NaN 383120 35 0 75558 0.261 + 15417 LPDKSIASL 9 55 472.27653176128445 942.5385105893689 2 472.27685546875 MULTI HCD FTMS 0 0 0 9660 139020.96875 0.07276255206775423 -7 0.21347427368164062 5 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 51.41523569358685 0.02959097413485123 1 {I|L}PD 3 6 46.771 0 0 4.9622 0 0 0 614.3557833307249 614.3557833307249 17.11758134947864 0 0 0 0 0.4247425010840047 1.3979400086720375 0.7742275032520141 0 + {I|L}PD 4.9622 + + 101 + NaN NaN 154248.6 NaN 7154 2509 9660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9666 47.86 NaN 51129 35 0 5019.7 0.261 + 35785 YYMRRRHL 8 34 597.8209228515625 NaN 0 597.8209228515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YYMRRRHL_ ENSG00000188803|ENST00000441885|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;nc|ENSG00000188803|Q6ZSJ9|SHISA6 2.8892196856762586 0.38822285293237185 1 {I|L}S 2 8 15.217 0 0 1.2759 0 0 326.12576279121237 663.3615816705686 989.487344461781 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}S 1.2759 - 3 + NaN NaN 92970.2 NaN 7155 2509 9660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9668 47.865 NaN 1533500 35 0 288500 0.327 + 34220 YPDPYSRASL 10 110 584.7853097297145 1167.556066526229 2 584.7855834960938 MULTI HCD FTMS 0 0 0 9667 831824.75 0.44906735458988734 -6 0.17354202270507812 1 Unmodified _YPDPYSRASL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 108.26204199777034 5.332231170430618E-05 1 YPDPYSRAS{I|L} 10 0 + 98.862 0 0 8.4674 8.4674 94.805 0 0 0 59.15292375798266 8.111206103324733 8.111206103324733 16.693182397911187 0 2.7588643834802156 1.6989700043360187 1.055462187404089 0.2302046884880938 + + YPDPYSRAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYSRAS{I|L};[DP]YPYSRAS{I|L};YPDPY[KT]{[RE]|[WV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSRASPY{I|L};[DP]PYYSRAS{I|L};[DP]YSRASPY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSRA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L};[DP]YS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAS{I|L} 8.4674;7.0376;6.8672;6.6793;5.2666;5.2579;5.0962;4.94;4.816;4.7696 +;+;-;-;-;-;-;-;-;- + 6951 + NaN NaN 320229.8 NaN 7156 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9669 47.869 NaN 796060 35 0 78302 0.261 + -1 LWIQELTT 8 76 523.2803925706934 NaN 0 523.2694091796875 PEAK HCD FTMS 0 0 0 9667 13066.7099609375 0.5462908245933596 -5 0.14019393920898438 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LWIQELTT_ REV__ENSG00000068724|ENST00000319190|TTC7A;REV__ENST00000409825.5_1_2:47184044-47301059:+|nuORF;REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF;REV__nc|ENSG00000068724|Q9ULT0-4|TTC7A;REV__TTC7A|p.Q705H|1|0.55|ENSG00000068724|chr2:47051843-47051843|G/T|missense_variant 16.942295170755138 0.3865212393897457 1 {I|L}ESVQ 5 -1 40.935 0 0 3.9189 0 0 220.10685230098483 265.13031946353755 485.2371717645224 0 0 0 0 0 0 0 1.0941876774005248 0.6549471895720984 {I|L}ESVQ 3.9189 - 402 + NaN NaN 224180.4 NaN 7157 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9670 47.874 NaN 164220 35 0 19344 0.261 + 4161 ETPQVAVIVR 10 45 556.3270505695367 1110.6395482058733 2 556.3273315429688 MULTI HCD FTMS 0 0 0 9667 61995.94140625 0.3454149647249732 5 -0.13821792602539062 3 Unmodified _ETPQVAVIVR_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000493299.1_1_3:184038318-184039070:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 20.41453444215458 0.3201613495159799 1 V{I|L}VR 4 6 30.974 0 0 2.7889 0 0 625.3060348775515 0 625.3060348775515 0 14.363496300939289 0 0 0 0.3807196863200844 0 0 0 + V{I|L}VR 2.7889 + + 49 + NaN NaN 106390.7 NaN 7158 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9671 47.877 NaN 100030 35 0 11241 0.261 -1 VMSATFAKF 9 44 509.25740834549833 NaN 0 509.2571105957031 PEAK HCD FTMS 0 0 0 9667 39495.6640625 0.6515815928098533 1 -0.0270538330078125 4 Oxidation (M) _VM(Oxidation (M))SATFAKF_ ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2 26.88365393820708 0.14119366324382274 1 S 1 -1 10.485 0 0 1.0314 0 0 683.3640160544749 243.08086572818596 926.4448817826608 0 0 0 0 0 0.5 0 0 0 S 1.0314 + + 4 + NaN NaN 98459.9 NaN 7159 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9672 47.881 NaN 80168 35 0 13857 0.261 + 30662 VPDSPENEL 9 40 500.23528151491735 998.4560100966347 2 500.24761962890625 MULTI HCD FTMS 0 0 0 9667 6668.7265625 0.0871965743148594 7 -0.19124984741210938 5 Unmodified _VPDSPENEL_ ENSG00000132849|ENST00000642238|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;nc|ENSG00000132849|Q8NI35|PATJ 10.823927491677226 0.26684000660059787 1 EAW 3 8 15.49 0 0 1.5514 0 0 131.06882026485374 478.20795618228755 609.2767764471413 0 0 0 0 0 0 0 0.3807196863200844 0 EAW 1.5514 - 15 + NaN NaN 104001.7 NaN 7160 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9673 47.884 NaN 66803 35 0 7443.4 0.261 + -1 LEMADSCSL 9 32 492.70412209824383 983.3936912632877 2 492.7044372558594 MULTI HCD FTMS 0 0 0 9667 35894.2890625 0.37796149990482003 21 -0.6043167114257812 6 Oxidation (M) _LEM(Oxidation (M))ADSCSL_ REV__ENST00000584053.1_1_17:37896424-37899062:+|nuORF;REV__ENST00000584819.5_1_17:37894608-37899062:+|nuORF;REV__nc|ENSG00000141738|Q14451-3|GRB7 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F}S{I|L} 3 -1 33.94 0 0 3.4513 0 0 618.2311268537125 0 618.2311268537125 0 31.721675119240512 0 0 0 0.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}S{I|L} 3.4513 - 12 NaN NaN 107129.9 NaN 7161 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9674 47.887 NaN 92581 35 0 18127 0.261 + 14735 LHQQHGTLSH 10 36 579.2929601185044 NaN 0 579.29296875 PEAK HCD FTMS 0 0 0 9667 25698.736328125 0.5418076389475673 37 -1.06866455078125 7 Unmodified _LHQQHGTLSH_ REV__ENST00000342427.6_1_20:32332990-32336802:+|nuORF 3.5964929083625545 0.337106189561315 1 {I|L} 1 -1 6.9897 0 0 0.60435 0 0 354.173431368065 686.2868746393186 1040.4603060073837 0 0 0 0 0 0 0 0 0 {I|L} 0.60435 + + 3 + NaN NaN 93674.2 NaN 7162 2510 9667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9676 47.892 NaN 1486700 35 0 143370 0.327 + 28553 TPTEVKDYL 9 110 533.2764337301227 1064.5383145270453 2 533.2901611328125 MULTI HCD FTMS 0 0 0 9675 84919.4375 0.0779773123268237 -6 0.16724777221679688 1 Unmodified _TPTEVKDYL_ ENSG00000106588|ENST00000223321|PSMA2 27.223235318498237 0.1251536255799991 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV 8 7 44.956 0 0 4.2231 0 0 0 128.04502545707615 128.04502545707615 -0.22734383896148103 0 -0.22734383896148103 0 0 0 1.5228787452803376 0.3252574989159953 0.850576203518622 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV 4.2231 - 5031 NaN NaN 305242.1 NaN 7163 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9677 47.897 NaN 1483200 35 0 121650 0.261 + 24198 RYFKGPELL 9 103 561.8212326354909 1121.6279123377817 2 561.819091796875 MULTI HCD FTMS 0 0 0 9675 880608.75 1 0 0 2 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 114.20165948288297 0.0022564706844261533 1 [YR]{M(Oxidation (M))|F}KGPE{I|L}{I|L} 9 0 + 92.339 0 0 8.2326 8.2326 88.119 0 0 0 2.509369291070371 16.478174818886373 2.509369291070371 2.509369291070371 0 1.8098943791441968 1.2218487496163564 0.7742275032520141 0.9876954943324545 + + [YR]{M(Oxidation (M))|F}KGPE{I|L}{I|L};[EP]G{I|L}VVGPE{I|L}{I|L};[EP]G{I|L}VVG{I|L}EP{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}EP{I|L};[EP]{I|L}GVVGPE{I|L}{I|L};[YR]{M(Oxidation (M))|F}K{I|L}GEP{I|L};[EP]G{I|L}K{I|L}HC{I|L}{I|L};[EP]G{I|L}VVG{I|L}PE{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L};[EP]G{I|L}VV{I|L}GEP{I|L} 8.2326;8.0089;7.6899;7.6562;7.3504;7.3446;7.2272;7.1805;7.1468;7.0388 +;-;-;-;-;-;-;-;-;- + 7690 NaN NaN 304003.7 NaN 7164 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9678 47.901 NaN 1024500 35 0 339480 0.261 + 8525 HAHLDIEAF 9 80 526.7617462445974 NaN 0 526.7618408203125 PEAK HCD FTMS 0 0 0 9675 509443.125 0.6013424151683869 4 -0.11116409301757812 3 Unmodified _HAHLDIEAF_ ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF 112.59319219568356 1.8842603961473373E-08 1 AE{I|L}D{I|L} 5 5 57.607 0 0 5.4785 0 0 165.07943634430438 342.1320894830688 507.2115258273732 0 0 0 0 0 2.2302046884880937 0 1.1237125054200234 0 AE{I|L}D{I|L} 5.4785 - 456 + NaN NaN 245966.6 NaN 7165 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9679 47.904 NaN 403910 35 0 41379 0.261 + 18196 MPDLPEKL 8 78 479.7494054996792 957.4842580661584 2 479.7494201660156 MULTI HCD FTMS 0 0 0 9675 238752.890625 0.777438647452225 -5 0.14394760131835938 4 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 63.960520009940105 0.04134249892021528 1 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 55.2 0 0 5.7652 5.7652 83.872 0 0 0 2.5539944162870754 2.5539944162870754 2.5539944162870754 2.5539944162870754 0 2.055462187404089 0 0 0.2742275032520141 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{M(Oxidation (M))|F}PD{I|L}P{I|L}GS{I|L};{M(Oxidation (M))|F}PD{I|L}P{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P{I|L}KE 5.7652;5.4984;4.1957;3.7829;2.3633 +;+;-;-;- + 233 + NaN NaN 153369.9 NaN 7166 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9680 47.907 NaN 317580 35 0 18915 0.261 -1 MMTMERVL 8 78 529.7382004629416 1057.461847992683 2 529.7382202148438 MULTI HCD FTMS 0 0 0 9675 99079.6953125 0.8090572272283697 -1 0.0270538330078125 5 3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))TM(Oxidation (M))ERVL_ ENST00000487519.5_1_10:60155135-60155255:+|nuORF 25.399314129420986 0.40691472774782006 1 YYS{[VA]|[{I|L}G]}TEPE 9 -1 + 40.071 0 0 3.7893 3.7893 88.048 0 0 0 4.14105284875555 6.733015371104912 4.14105284875555 24.51522836744668 0 0 1.6989700043360187 0.6382104921644451 0 YYS{[VA]|[{I|L}G]}TEPE;{M(Oxidation (M))|F}PE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};{M(Oxidation (M))|F}D{[RE]|[WV]}{I|L}[MT]{M(Oxidation (M))|F} 3.7893;1.471;1.3645 -;-;- 526 NaN NaN 127585.2 NaN 7167 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9681 47.911 NaN 295250 35 0 44503 0.261 + 2595 DTTSYLIGR 9 62 513.2669500932163 NaN 0 513.267333984375 PEAK HCD FTMS 0 0 0 9675 76532.828125 1 0 0 6 Unmodified _DTTSYLIGR_ ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 72.96794272382148 0.005289789941973842 1 TSY{I|L}{I|L} 5 4 42.251 0 0 4.1239 0 0 216.07490675966886 228.11031519107658 444.1852219507455 0 0 0 0 0 1.7302046884880937 0 0 0 + TSY{I|L}{I|L} 4.1239 + + 145 + NaN NaN 127775.2 NaN 7168 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9682 47.914 NaN 246190 35 0 13317 0.261 + 1340 AYPHNLMTF 9 56 555.2577602370291 1108.500967540858 2 555.2581787109375 MULTI HCD FTMS 0 0 0 9675 87006.6484375 0.05304321224503482 37 -1.067901611328125 7 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 52.268347100219714 0.028397529699942435 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}V]R[YG]S{M(Oxidation (M))|F} 9 6 + 36.065 0 0 3.2535 3.2535 86.175 0 0 0 7.860527937172613 14.277486376553917 7.860527937172613 14.190840781556208 0 0.4247425010840047 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}V]R[YG]S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[NP]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[EP]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HT][KS]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HT]R[NP]EN;{[QN]|[E{I|L}]|[KN]}Q{[VA]|[{I|L}G]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HT]R[HT]{[ES]|[DT]|[{I|L}C]} 3.2535;1.9734;1.5429;1.2714;0.86002;0.57531;0.3009 -;-;-;-;-;-;- 182 NaN NaN 123221.3 NaN 7169 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9683 47.917 NaN 163900 35 0 9316.7 0.263 + 35430 YYEKLHTYF 9 52 421.8729716370388 1262.5970855113164 3 421.8734436035156 MULTI HCD FTMS 0 0 0 9675 55078.0078125 0.053110761953773865 25 -0.7263259887695312 8 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 23.789781309258295 0.1548179064208189 1 YY 2 7 45.217 0 0 3.5812 0 0 0 933.4496165093707 933.4496165093707 22.74227503252014 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5812 + + 13 + NaN NaN 122826.6 NaN 7170 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9684 47.921 NaN 134220 35 0 8178.2 0.261 + 20536 PDVAVALQAQ 10 53 506.2768214954945 1010.539090057789 2 507.2919616699219 MULTI HCD FTMS 0 0 0 9675 7557.55224609375 1 0 0 9 Unmodified _PDVAVALQAQ_ REV__ENSG00000127838|ENST00000273077|PNKD;REV__nc|ENSG00000127838|Q8N490-3|PNKD;REV__nc|ENSG00000127838|Q8N490-4|PNKD 6.723162845929126 0.4397169348982109 1 [KP][KC]AVV 7 -1 16.228 0 0 1.6059 0 0 0 282.1102388971313 282.1102388971313 -6.1675055410631785 0 -6.1675055410631785 0 0 0 0 0 0.3252574989159953 [KP][KC]AVV 1.6059 - 219 + NaN NaN 101606.8 NaN 7171 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9685 47.924 NaN 97204 35 0 17953 0.261 + 26205 SPSKLIVE 8 45 436.75835048375353 871.5021480343071 2 436.7589416503906 MULTI HCD FTMS 0 0 0 9675 37499.703125 0.5043028934397449 7 -0.19395828247070312 10 Unmodified _SPSKLIVE_ REV__ENSG00000197457|ENST00000370053|STMN3;REV__nc|ENSG00000197457|Q9NZ72-2|STMN3;REV__STMN3|p.N125Kfs*2|1|0.16|ENSG00000197457|chr20:63642216-63642217|-/T|frameshift_variant 11.640296217721598 0.50814828952472 1 SPP 3 -1 41.304 0 0 4.7394 0 0 0 587.3438814752561 587.3438814752561 23.51703302909064 0 0 0 0 0.28872548999643577 1.5228787452803376 0 0 SPP 4.7394 - 22 + NaN NaN 102646.8 NaN 7172 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9686 47.927 NaN 90475 35 0 13041 0.261 + 22082 QHPETPLHIS 10 30 579.7980433666053 1157.5815338000104 2 579.7988891601562 MULTI HCD FTMS 0 0 0 9675 29271.310546875 0.9654313362436233 1 -0.0402679443359375 11 Unmodified _QHPETPLHIS_ ENSG00000141101|ENST00000268802|NOB1;ENST00000502915.1_1_4:139481866-139482694:+|nuORF;ENST00000561677.6_1_16:69782679-69783527:-|nuORF 10.799506525563784 0.4100970765206026 1 {I|L}HS{I|L} 4 8 38.998 0 0 3.3689 0 0 689.3098011701187 0 689.3098011701187 0 37.738912247552925 0 0 0 0.7059771852360797 0 0 0 {I|L}HS{I|L} 3.3689 - 13 NaN NaN 93642.6 NaN 7173 2511 9675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9688 47.932 NaN 1698600 35 0 275210 0.326 -1 MPETTETVL 9 76 518.7471070197194 1035.4796611062386 2 518.7471923828125 MULTI HCD FTMS 0 0 0 9687 788811.6875 0.8686168963331748 1 -0.0201263427734375 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 37.97399986684836 0.07464525285885698 1 PETV{I|L} 5 -1 45.305 0 0 4.3753 0 0 478.1813717369312 0 478.1813717369312 0 39.820618910682484 0 0 0 0.8807196863200843 0 0.805462187404089 0 PETV{I|L} 4.3753 - 132 NaN NaN 339166.8 NaN 7174 2512 9687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9689 47.937 NaN 1084600 35 0 121100 0.261 + 12593 KTTDGWTPV 9 91 502.75674472190735 NaN 0 502.7742919921875 PEAK HCD FTMS 0 0 0 9687 16078.50390625 0.9442847286306416 1 -0.0201263427734375 2 Unmodified _KTTDGWTPV_ ENSG00000077063|ENST00000160373|CTTNBP2 10.073929032068715 0.24642998803896465 1 PEEH 4 9 10.059 0 0 1.0024 0 0 71.00261432669704 437.2766222815255 508.2792366082225 0 0 0 0 0 0 0 0.9124379954164592 0 PEEH 1.0024 - 56 + NaN NaN 249633.3 NaN 7175 2512 9687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9690 47.941 NaN 430950 35 0 95659 0.261 + 27770 TAVGHALVL 9 56 440.76609217268026 879.5176314121605 2 440.76617431640625 MULTI HCD FTMS 0 0 0 9687 328790.90625 1 0 0 3 Unmodified _TAVGHALVL_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 63.562846038646086 0.012597299157545023 1 V{I|L} 2 7 30.969 0 0 3.5211 0 0 649.354589275245 0 649.354589275245 0 -5.527646714607357 -5.527646714607357 0 0 1 0 0 0 + V{I|L} 3.5211 + + 102 + NaN NaN 156270.6 NaN 7176 2512 9687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9691 47.944 NaN 41272 35 0 4646.7 0.261 + -1 HMRIHQQLM 9 26 613.298583984375 NaN 0 613.298583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _HM(Oxidation (M))RIHQQLM(Oxidation (M))_ REV__ENSG00000101115|ENST00000217086|SALL4 1.844237919475145 0.28630992268396543 1 {I|L} 1 -1 6.9897 0 0 0.57078 0 0 165.05330243964983 943.4275606744749 1108.4808631141248 0 0 0 0 0 0 0 0 0 {I|L} 0.57078 + + 1 + NaN NaN 86700.1 NaN 7177 2512 9687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9692 47.948 NaN 52861 35 0 5488.9 0.263 + 14439 LERGTRPH 8 37 483.2675569250524 NaN 0 482.8778991699219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LERGTRPH_ ENSG00000160767|ENST00000361361|ENTREP3;ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3 4.3292370932331545 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85969.8 NaN 7178 2512 9687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9694 47.952 NaN 1860200 35 0 269950 0.327 + 24860 RYQDIIHSI 9 90 572.8087967908872 1143.6030406485743 2 572.8090209960938 MULTI HCD FTMS 0 0 0 9693 978348.125 0.7619758448871691 2 -0.050769805908203125 1 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 125.52916310638031 0.0008761121089336018 1 [YR]QD{I|L}{I|L}HS{I|L} 9 0 + 76.652 0 0 6.7027 6.7027 87.828 0 0 0 7.845756745415699 7.845756745415699 7.845756745415699 7.845756745415699 0 1.9489700043360187 1.2218487496163564 0.3807196863200844 1.0044321917401078 + + [YR]QD{I|L}{I|L}HS{I|L};RYQD{I|L}{I|L}HS{I|L};[YR][AG]D{I|L}{I|L}HS{I|L};RYQD{I|L}{I|L}{I|L}[HS];[VP][HN]D{I|L}{I|L}HS{I|L};[YR]QD{I|L}V[HT]{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}R;{I|L}S[HQ]{NN|[MP]|[D{I|L}]|[EV]}{I|L}YR;{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{I|L}D{[TV]|[{I|L}S]}[DN];[YR]{I|L}{I|L}{[QS]|[NT]}HD{I|L} 6.7027;6.0166;5.8975;4.8903;4.1063;3.6667;3.4208;3.2852;2.6156;2.4137 +;+;-;-;-;-;-;-;-;- + 1072 NaN NaN 377170.1 NaN 7179 2513 9693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9695 47.957 NaN 430070 35 0 104390 0.261 + 3877 EPNPDDPLM 9 62 522.2210890446795 1042.427625156159 2 522.2212524414062 MULTI HCD FTMS 0 0 0 9693 253489.21875 0.8594276023821312 -4 0.11075592041015625 2 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 57.72198328787511 0.020768266150574023 1 DP{I|L}{M(Oxidation (M))|F} 4 5 48.052 0 0 4.6097 0 0 552.2179432599625 0 552.2179432599625 0 38.55872103607494 0 0 0 1.7134679910804405 0 0.8494850021680094 0 + DP{I|L}{M(Oxidation (M))|F} 4.6097 + + 116 NaN NaN 159423.6 NaN 7180 2513 9693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9696 47.961 NaN 222730 35 0 9713.8 0.261 -1 VYKTIMEQF 9 75 587.7937141530424 1173.5728753728847 2 588.3084716796875 MULTI HCD FTMS 0 0 0 9693 23691.154296875 0.27518890001856694 16 -0.46007537841796875 3 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ BAIAP2-TBCD|1|fusion;ENSG00000175866|ENST00000428708|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2 31.26834338654808 0.10542797264966089 1 [YV]KQ[C(Carbamidomethyl (C))N]DTT 9 -1 43.874 0 0 3.7385 0 0 0 61.0100922365497 61.0100922365497 33.172874778693355 0 0 0 0 0.8494850021680094 2 0.3494850021680094 0 [YV]KQ[C(Carbamidomethyl (C))N]DTT 3.7385 - 771 NaN NaN 120336.2 NaN 7181 2513 9693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9697 47.965 NaN 59072 35 0 6420.2 0.261 -1 HFIAEHYMF 9 34 605.7705008089107 1209.5264486846213 2 605.7709350585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 25.399314129420986 0.14091189997036632 1 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.3305 0 0 734.347459861525 0 734.347459861525 0 -3.0102999566398125 -3.0102999566398125 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3305 + + 14 NaN NaN 98354.4 NaN 7182 2513 9693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9698 47.968 NaN 66507 35 0 18224 0.261 -1 MYPLYNSFTE 10 25 640.7779193768916 1279.5412858205832 2 641.2791137695312 MULTI HCD FTMS 0 0 0 9693 6025.54736328125 0.11335443042625669 -4 0.11075592041015625 5 Oxidation (M) _M(Oxidation (M))YPLYNSFTE_ ENSG00000166670|ENST00000279441|MMP10 0.45834013312273997 0.47287763746706196 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87791.5 NaN 7183 2513 9693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9700 47.973 NaN 779410 35 0 162880 0.327 + 25977 SPDSEVTSL 9 56 467.7218056345137 933.4290583358274 2 467.7218017578125 MULTI HCD FTMS 0 0 0 9699 462454.1875 0.7977146660678183 2 -0.063507080078125 1 Unmodified _SPDSEVTSL_ ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8 85.35673624503755 0.00464763827098139 1 VTS{I|L} 4 5 58.928 0 0 6.3131 0 0 515.1864090513392 0 515.1864090513392 0 29.57865876114063 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + VTS{I|L} 6.3131 + + 69 NaN NaN 201443 NaN 7184 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9701 47.978 NaN 907240 35 0 105680 0.261 + 22273 QPDQTRIVAL 10 84 570.8223000915153 1139.6300472498306 2 570.8223876953125 MULTI HCD FTMS 0 0 0 9699 566258.375 0.8435955147825823 -2 0.04059600830078125 2 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 79.59630418116434 0.006214567534389808 1 AV{I|L}RTED 7 9 44.646 0 0 3.9176 0 0 148.1205974725736 204.07785974674064 352.19845721931426 0 0 0 0 0 0 0 1.646591250700361 0 AV{I|L}RTED 3.9176 - 802 + NaN NaN 224827.7 NaN 7185 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9702 47.982 NaN 263650 35 0 53324 0.261 + 19614 NVADLTSLR 9 52 494.7746679270831 987.5347829209662 2 494.77471923828125 MULTI HCD FTMS 0 0 0 9699 58458.4609375 0.5351198449624267 1 -0.030300140380859375 3 Unmodified _NVADLTSLR_ ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000558931.5_1_14:24614434-24614695:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000560592.5_1_14:24614521-24614695:-|nuORF 34.221707139014875 0.09187037853496335 1 {[NV]|[RG]}AD{I|L}T 6 3 53.461 0 0 5.4136 0 0 0 371.20456873111567 371.20456873111567 47.976146931408294 0 0 0 0 2.079689690656103 0 0.4247425010840047 0 + {[NV]|[RG]}AD{I|L}T 5.4136 + + 63 + NaN NaN 121884.3 NaN 7186 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9703 47.985 NaN 224230 35 0 53346 0.261 + 24035 RWPKKSAEFLL 11 50 458.9344834295646 1373.7816208888937 3 458.9345703125 MULTI HCD FTMS 0 0 0 9699 55053.02734375 0.49819324386605374 10 -0.28925323486328125 4 Unmodified _RWPKKSAEFLL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 2.0839675508343545 0.40978109276162705 1 {I|L}{I|L} 2 9 20.969 0 0 1.5264 0 0 1129.601779811144 0 1129.601779811144 0 5.484550065040281 0 0 0 0 0 0 0 + {I|L}{I|L} 1.5264 + + 9 NaN NaN 111762.1 NaN 7187 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9704 47.988 NaN 92819 35 0 20051 0.261 + 31548 VYGSFASKL 9 38 486.26343329969205 970.5123136661841 2 486.2635192871094 MULTI HCD FTMS 0 0 0 9699 51807.28515625 0.4797602476599205 6 -0.16957473754882812 5 Unmodified _VYGSFASKL_ ENSG00000155096|ENST00000337198|AZIN1 21.536976647645854 0.1742816388551942 1 [YV]G 3 6 34.705 0 0 3.5759 0 0 0 648.3405245416624 648.3405245416624 16.746199743006045 0 0 0 0 0.4247425010840047 2 0 0 + [YV]G 3.5759 + + 11 + NaN NaN 104435 NaN 7188 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9705 47.992 NaN 157700 35 0 31127 0.261 + 33353 YGFYGDII 8 42 474.228567313456 946.442581693712 2 474.2281799316406 MULTI HCD FTMS 0 0 0 9699 67849.8203125 0.8230566597844664 3 -0.08333206176757812 6 Unmodified _YGFYGDII_ ENSG00000100422|ENST00000216264|CERK;nc|ENSG00000100422|Q8TCT0-2|CERK 13.50788311687929 0.4944073034352369 1 {I|L}{I|L} 2 6 17.474 0 0 1.8463 0 0 702.2627593699953 0 702.2627593699953 0 11.989700043360187 0 0 0 0 0 0 0 + {I|L}{I|L} 1.8463 + + 18 NaN NaN 109197.2 NaN 7189 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9706 47.995 NaN 217410 35 0 61385 0.261 + 14390 LEGTSEIICL 10 61 539.2781713968017 1076.5417898604032 2 540.2633666992188 MULTI HCD FTMS 0 0 0 9699 18851.9921875 0.5370230926906769 10 -0.28925323486328125 7 Unmodified _LEGTSEIICL_ CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-5|CSMD3 6.723162845929126 0.4397169348982109 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 8 21.427 0 0 1.9903 0 0 0 726.3358321790157 726.3358321790157 5.228787452803374 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 1.9903 - 71 NaN NaN 122273.4 NaN 7190 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9707 47.998 NaN 63390 35 0 12797 0.261 -1 0 31 623.3399065832294 622.3326301166294 1 623.3400268554688 MULTI HCD FTMS 0 0 0 9699 25352.705078125 0.6008850758631825 3 -0.08333206176757812 8 NaN NaN 1 V{I|L} 2 -1 20.969 0 0 3.3694 0 0 392.1693592755875 0 392.1693592755875 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 3.3694 - 2 NaN NaN 91241.7 NaN 7191 2514 9699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9709 48.003 NaN 2799600 35 0 590080 0.327 + 34221 YPDPYSRASL 10 116 584.7853097297145 1167.556066526229 2 584.7854614257812 MULTI HCD FTMS 0 0 0 9708 1848499.375 0.9979274171540461 -1 0.030300140380859375 1 Unmodified _YPDPYSRASL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 150.61878029816774 1.8873603672180397E-07 1 YPDPYSRAS{I|L} 10 0 + 104.19 0 0 8.9239 8.9239 94.912 0 0 0 56.35672825722934 9.744237387763093 9.744237387763093 13.963169677273811 0 2.858349385648225 1.5228787452803376 1.5897803053245956 0.3054621874040891 + + YPDPYSRAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYSRAS{I|L};[DP]YPYSRAS{I|L};YPDPY[KT]{[RE]|[WV]};[DP]PYYSRAS{I|L};[DP]YP[QA]VHE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SPYDRAS{I|L};YPHV[QA]PDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP[QA]VHE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[RD]ASPY{I|L} 8.9239;7.728;7.5575;7.5237;5.9482;5.2749;5.1943;4.8357;4.6533;4.5427 +;+;-;-;-;-;-;-;-;- + 6621 + NaN NaN 521015.4 NaN 7192 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9710 48.008 NaN 2173200 35 0 520310 0.262 + 15418 LPDKSIASL 9 106 472.27653176128445 942.5385105893689 2 472.2765197753906 MULTI HCD FTMS 0 0 0 9708 1640305.875 0.8585240248998816 -1 0.030300140380859375 2 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 117.76058876431921 0.001675465467887476 1 {I|L}PDKS{I|L}AS{I|L} 9 0 + 94.905 0 0 10.069 10.069 94.987 0 0 0 25.492545000228716 10.51952015966225 10.51952015966225 10.51952015966225 0 2.6237125054200234 1.5228787452803376 1.8737125054200234 0 + + {I|L}PDKS{I|L}AS{I|L};[{I|L}P]DKS{I|L}AS{I|L};[{I|L}P]DKSA{I|L}S{I|L};{NN|[MP]|[D{I|L}]|[EV]}PKS{I|L}AS{I|L};[{I|L}P]DKS{I|L}SA{I|L};{NN|[MP]|[D{I|L}]|[EV]}KSP{I|L}AS{I|L};{[TV]|[{I|L}S]}A[TA]P{I|L}AS{I|L};{[TV]|[{I|L}S]}[VG]SP{I|L}AS{I|L};[{I|L}P]DKSAS{I|L}{I|L};[DP]{I|L}KS{I|L}AS{I|L} 10.069;8.953;7.6672;7.4815;7.2775;7.2158;7.1981;6.705;6.4241;6.3804 +;+;-;-;-;-;-;-;-;- + 1460 + NaN NaN 420880.9 NaN 7193 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9711 48.012 NaN 288130 35 0 23424 0.261 + 14706 LHCLPPSKP 9 63 496.27278288746174 990.5310128417235 2 496.2716064453125 MULTI HCD FTMS 0 0 0 9708 75377.1484375 0.5856397552595756 5 -0.13927459716796875 3 Unmodified _LHCLPPSKP_ ENST00000361483.4_1_12:111798605-111799217:-|nuORF 19.256988751693697 0.19398022840297344 1 [EP]G{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L} 9 7 + 52.545 0 0 5.3047 5.3047 90.007 0 0 0 5.717196696094433 40.23773107713893 5.717196696094433 21.800150061873097 0 2.4247425010840047 0 0.6747425010840047 0 [EP]G{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};{[QN]|[E{I|L}]|[KN]}[PG]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}GP;{[QN]|[E{I|L}]|[KN]}[PG]K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}[QA]{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}GAA{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}[KS]P;[YR]{M(Oxidation (M))|F}{[HG]|PP}{I|L}[QA];{[QN]|[E{I|L}]|[KN]}[PG]KE[YR];{[QN]|[E{I|L}]|[KN]}[PG]VV{I|L}G[HA];[YR][{I|L}V]{[WT]|[RM]}GP 5.3047;3.1039;2.7821;2.3613;2.2297;1.8796;1.5757;1.2704;0.72953;0.46311 -;-;-;-;-;-;-;-;-;- 192 NaN NaN 134380.7 NaN 7194 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9712 48.015 NaN 176020 35 0 17643 0.261 -1 0 56 545.2026577128992 1088.3907624925982 2 545.202880859375 MULTI HCD FTMS 0 0 0 9708 77829.9609375 0.7033960618092767 4 -0.10265731811523438 4 NaN NaN 1 A{I|L} 2 -1 14.693 0 0 1.35 0 0 886.2829402573652 0 886.2829402573652 0 4.4540294562328775 0 0 0 0 0 0 0 A{I|L} 1.35 - 16 NaN NaN 115155.9 NaN 7195 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9713 48.018 NaN 302770 35 0 27915 0.261 + 12769 KYDPNVYSI 9 75 549.7770540871661 1097.5395552411321 2 549.7771606445312 MULTI HCD FTMS 0 0 0 9708 66667.53125 0.852618821383003 -1 0.030300140380859375 5 Unmodified _KYDPNVYSI_ ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 29.84058131909904 0.11198220037953927 1 VWYS{I|L} 5 6 45.815 0 0 4.1744 0 0 431.21190077949376 0 431.21190077949376 0 19.61758134947864 0 0 0 1 0 0.3252574989159953 0 VWYS{I|L} 4.1744 - 387 NaN NaN 134248 NaN 7196 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9714 48.022 NaN 285420 35 0 35104 0.261 + 28368 TPDWAERQL 9 54 558.2776664057708 1114.5407798783415 2 558.2777099609375 MULTI HCD FTMS 0 0 0 9708 117883.6640625 0.42987915152741746 -3 0.07089614868164062 6 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 114.18643581695662 0.002258955990713129 1 [TP]DWAERQ{I|L} 9 0 + 100.83 0 0 9.0467 9.0467 93.03 0 0 0 16.745456621669476 65.81469596039213 16.745456621669476 9.208187539523749 0 2.5 1.5228787452803376 1.677825934852436 0 + + [TP]DWAERQ{I|L};[TP]DWAER[AG]{I|L};[DP]TWAERQ{I|L};[WD]PTAERQ{I|L};[DP]TWAER[AG]{I|L};[WD]PTAER[AG]{I|L};[DP]WTAERQ{I|L};[DP]WTAER[AG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP]AERQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP]AER[AG]{I|L} 9.0467;8.2205;6.9616;6.9147;6.1355;6.0885;5.5918;4.7656;4.3626;3.5364 +;-;-;-;-;-;-;-;-;- + 460 NaN NaN 122573.3 NaN 7197 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9715 48.025 NaN 73857 35 0 9115.6 0.261 + 35924 YYTKVYQEI 9 32 603.8057067268696 1205.5968605205392 2 603.8057250976562 MULTI HCD FTMS 0 0 0 9708 43382.92578125 0.9543861991956744 -1 0.030300140380859375 7 Unmodified _YYTKVYQEI_ ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;ENST00000557260.1_1_14:104380761-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ 23.789781309258295 0.1548179064208189 1 YQE{I|L} 4 5 36.186 0 0 3.0015 0 0 654.3384876935562 0 654.3384876935562 0 10.666988867065879 0 0 0 0 0 0.4247425010840047 0 + YQE{I|L} 3.0015 + + 10 NaN NaN 102078.5 NaN 7198 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9716 48.028 NaN 488230 35 0 91139 0.264 + 20225 NYLNHWNHF 9 73 415.5244459311571 1243.5515083936714 3 415.52484130859375 MULTI HCD FTMS 0 0 0 9708 69658.875 0.8042906876281914 -2 0.050769805908203125 8 Unmodified _NYLNHWNHF_ ENSG00000167363|ENST00000300784|FN3K 21.74664581756881 0.17247014374749275 1 NY[HM]SA 6 6 45.296 0 0 3.6424 0 0 0 537.2672213190061 537.2672213190061 31.3161404875364 0 0 0 0 0.3807196863200844 2 0.5 0 NY[HM]SA 3.6424 - 63 + NaN NaN 159740 NaN 7199 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9717 48.032 NaN 105520 35 0 19878 0.261 + -1 TQQSVPIVM 9 36 509.76615704819676 1017.5177611631935 2 509.7669982910156 MULTI HCD FTMS 0 0 0 9708 35317.4140625 1 0 0 9 Oxidation (M) _TQQSVPIVM(Oxidation (M))_ REV__ENST00000534816.1_1_8:146220430-146220868:+|nuORF 15.847184025352803 0.2234401846867398 1 {I|L}V{M(Oxidation (M))|F} 3 -1 33.06 0 0 3.2491 0 0 640.3194407059655 0 640.3194407059655 0 29.080306233405295 0 0 0 0.9247425010840047 0 0 0 {I|L}V{M(Oxidation (M))|F} 3.2491 + + 13 + NaN NaN 116552.5 NaN 7200 2515 9708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9719 48.036 NaN 2391600 35 0 110180 0.326 + 28554 TPTEVKDYL 9 123 533.2764337301227 1064.5383145270453 2 533.2771606445312 MULTI HCD FTMS 0 0 0 9718 988219.1875 0.9074327209367992 -1 0.033206939697265625 1 Unmodified _TPTEVKDYL_ ENSG00000106588|ENST00000223321|PSMA2 136.39213081522345 0.00021731600835925866 1 [TP]TEVKDY{I|L} 9 0 + 85.687 0 0 8.0492 8.0492 88.557 0 0 0 4.105382261628236 4.105382261628236 4.105382261628236 4.105382261628236 0 2.5 1.6989700043360187 1.8070370136990013 0 + + [TP]TEVKDY{I|L};TPTEVA{M(Oxidation (M))|F}VTT;TPTE{I|L}{I|L}TQY;TPTE[{I|L}P]PV[DP];[TP]TEVK[YV]E;TPTE{I|L}{I|L}T[AG]Y;{[VA]|[{I|L}G]}EEVKDY{I|L};[TP]{NN|[MP]|[D{I|L}]|[EV]}TKDY{I|L};{[DS]|[MA]|[CV]|TT}PEVKDY{I|L};TPT[W{I|L}]{M(Oxidation (M))|F}GM{I|L} 8.0492;7.6636;6.5594;6.1999;5.814;5.6944;5.4296;5.3281;5.0989;4.9251 +;-;-;-;-;-;-;-;-;- + 11291 NaN NaN 448796.6 NaN 7201 2516 9718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9720 48.041 NaN 949260 35 0 43857 0.261 + 9942 IDPLFKRFS 9 119 561.8212326354909 1121.6279123377817 2 562.8267211914062 MULTI HCD FTMS 0 0 0 9718 515272.5625 0.7256864958596575 2 -0.049587249755859375 2 Unmodified _IDPLFKRFS_ ENST00000484977.1_1_7:1197216-1197866:-|nuORF 24.020572477871973 0.15282392193088168 1 QA{I|L}[YK]{M(Oxidation (M))|F}AR 8 7 30.798 0 0 2.7459 0 0 126.08375175350041 0 126.08375175350041 0 -3.833194951442163 -3.833194951442163 0 0 0.04845500650402823 0 0 1.9679001828205482 QA{I|L}[YK]{M(Oxidation (M))|F}AR 2.7459 - 6733 + NaN NaN 234729.4 NaN 7202 2516 9718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9721 48.045 NaN 2243900 35 0 285120 0.261 + 551 APEEHPVLL 9 106 502.7741653025147 1003.5337776718294 2 503.26641845703125 MULTI HCD FTMS 0 0 0 9718 152980.828125 0.0026494394594583923 60 -1.7095565795898438 3 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 46.020951573049366 0.037705236580089195 1 AQDPYKG{I|L}{I|L} 9 6 + 44.563 0 0 4.4406 4.4406 81.01 0 0 0 10.679027039812127 9.771212547196619 9.771212547196619 1.2371250542002343 0 0.8494850021680094 0 0.3494850021680094 0 AQDPYKG{I|L}{I|L};ANEPYKG{I|L}{I|L};A[AG]DPYKG{I|L}{I|L};AQDPYKAV{I|L};AGGEPYKG{I|L}{I|L};[DP][DV]H[VP]{I|L}{I|L};ANEPYKAV{I|L};[DP][KS]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}A{I|L}{I|L};{[CP]|[EA]}PEH[VP]{I|L}{I|L};[DP][{I|L}P]{[YC]|[HE]}A{I|L}{I|L} 4.4406;4.3173;3.523;3.4669;3.3997;3.3764;3.3436;3.0961;3.0015;2.819 -;-;-;-;-;-;-;-;-;- 890 + NaN NaN 434543.8 NaN 7203 2516 9718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9722 48.048 NaN 108230 35 0 31682 0.261 + -1 LVMRSDCWC 9 34 621.7559101926153 1241.4972674520304 2 621.7561645507812 MULTI HCD FTMS 0 0 0 9718 63418.70703125 0.4538173096737238 -4 0.10410308837890625 4 2 Carbamidomethyl (C),Oxidation (M) _LVM(Oxidation (M))RSDC(Carbamidomethyl (C))WC(Carbamidomethyl (C))_ REV__ENST00000541451.5_3_16:2198830-2200035:+|nuORF;REV__ENST00000565592.5_1_16:2190927-2200035:+|nuORF 7.910154910731844 0.2910521888787154 1 [{I|L}V]{I|L}DE 5 -1 62.703 0 0 5.0506 0 0 0 669.1714571588499 669.1714571588499 37.48651242028323 0 0 0 0 1.9247425010840047 1.6989700043360187 0.4247425010840047 0 [{I|L}V]{I|L}DE 5.0506 - 25 + NaN NaN 111934 NaN 7204 2516 9718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9723 48.051 NaN 98160 35 0 23262 0.261 -1 DYPSKMEYF 9 31 598.2522140049902 1194.4898750767802 2 598.25244140625 MULTI HCD FTMS 0 0 0 9718 33178.2578125 0.7227368656442855 -1 0.033206939697265625 5 Oxidation (M) _DYPSKM(Oxidation (M))EYF_ ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7 6.2057823575117 0.30397260197431997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 100315.4 NaN 7205 2516 9718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9725 48.056 NaN 381700 35 0 41184 0.327 + 18197 MPDLPEKL 8 65 479.7494054996792 957.4842580661584 2 479.7492980957031 MULTI HCD FTMS 0 0 0 9724 284737.9375 0.9271773691570825 1 -0.02976226806640625 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 60.07390631473393 0.06540289509817182 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L} 8 0 + 50.582 0 0 5.2828 5.2828 83.951 0 0 0 4.558546584526795 4.558546584526795 4.558546584526795 4.558546584526795 0 1.742992819099939 0 1.2059771852360797 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P[K{I|L}]E 5.2828;4.8067;1.8292 +;+;- + 77 NaN NaN 135362.1 NaN 7206 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9726 48.061 NaN 762560 35 0 158280 0.261 + 2317 DMHTEVTTL 9 82 523.7446846235399 1045.4748163138797 2 523.7448120117188 MULTI HCD FTMS 0 0 0 9724 287745.40625 0.802060460714786 -2 0.05303192138671875 2 Unmodified _DMHTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 43.85829265575387 0.04763305254408404 1 VTT{I|L} 4 5 51.983 0 0 4.9721 0 0 613.2170277326187 0 613.2170277326187 0 28.377501708754735 0 0 0 1.3494850021680094 0 0.805462187404089 0 + VTT{I|L} 4.9721 + + 993 NaN NaN 202157.7 NaN 7207 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9727 48.064 NaN 410740 35 0 130280 0.261 + 8526 HAHLDIEAF 9 59 526.7617462445974 NaN 0 526.76171875 PEAK HCD FTMS 0 0 0 9724 168574.515625 0.198983952058983 10 -0.2993621826171875 3 Unmodified _HAHLDIEAF_ ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF 46.020951573049366 0.05896589607441476 1 AE{I|L}D 4 6 41.428 0 0 3.9399 0 0 165.0794406199994 455.21628748111567 620.2957281011151 0 0 0 0 0 2.0994850021680094 0 0 0 AE{I|L}D 3.9399 - 232 + NaN NaN 148375.3 NaN 7208 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9728 48.068 NaN 159930 35 0 23663 0.261 + 10733 IRAPEEPRWPL 11 44 455.25405593363234 1362.740338401097 3 455.2542419433594 MULTI HCD FTMS 0 0 0 9724 4571.357421875 0.038406719784036855 8 -0.2425994873046875 4 Unmodified _IRAPEEPRWPL_ REV__ENSG00000159433|ENST00000290607|STARD9 4.11662792887243 0.40086653484894175 1 Y{I|L} 2 -1 25.969 0 0 1.9057 0 0 1068.5828715925159 0 1068.5828715925159 0 18.979400086720375 0 0 0 0.5 0 0 0 Y{I|L} 1.9057 - 12 NaN NaN 116558.1 NaN 7209 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9729 48.071 NaN 356140 35 0 88805 0.261 -1 KYMPNVKVAVF 11 55 437.9090113501808 1310.7052046507424 3 437.9098205566406 MULTI HCD FTMS 0 0 0 9724 93450.0234375 0.6535335857587234 -5 0.12392807006835938 5 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 10.315234532428624 0.3672054350828177 1 V{M(Oxidation (M))|F} 2 -1 23.583 0 0 1.7993 0 0 1046.5570582238252 0 1046.5570582238252 0 6.593793813122062 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.7993 + + 11 + NaN NaN 138367.6 NaN 7210 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9730 48.074 NaN 83980 35 0 10613 0.261 -1 SLPSDRPVM 9 45 509.25740834549833 NaN 0 509.25762939453125 PEAK HCD FTMS 0 0 0 9724 29263.330078125 0.48277317715311363 8 -0.2425994873046875 6 Oxidation (M) _SLPSDRPVM(Oxidation (M))_ ENSG00000174206|ENST00000398055|KICS2 11.640296217721598 0.23883959125015683 1 V{I|L} 2 -1 6.4537 0 0 0.63489 0 0 164.02932977517793 637.2977999322874 801.3271297074652 0 0 0 0 0 0 0 0 0 V{I|L} 0.63489 - 6 + NaN NaN 107502.4 NaN 7211 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9731 48.078 NaN 106780 35 0 7945.3 0.261 + 4050 ESFYGIGTTR 10 46 565.7756978654514 1129.5368427977028 2 566.2750854492188 MULTI HCD FTMS 0 0 0 9724 21559.927734375 0.5573705190950454 -1 0.019824981689453125 7 Unmodified _ESFYGIGTTR_ ENST00000274712.7_1_5:140080440-140083534:+|nuORF 4.189502756095605 0.45312800054222196 1 AY{M(Oxidation (M))|F} 3 9 9.0411 0 0 0.80042 0 0 145.06198950718425 600.3095797174436 745.3715692246278 0 0 0 0 0 0 0 0 0 AY{M(Oxidation (M))|F} 0.80042 - 31 + NaN NaN 102841.6 NaN 7212 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9732 48.081 NaN 145130 35 0 11718 0.263 + 35685 YYKWLEQSF 9 59 421.8729716370388 1262.5970855113164 3 421.8725280761719 MULTI HCD FTMS 0 0 0 9724 73111.5 0.07050014382876946 31 -0.9037055969238281 8 Unmodified _YYKWLEQSF_ tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3456 0 0 1097.5181803372914 0 1097.5181803372914 0 11.505149978319906 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3456 + + 14 + NaN NaN 104708.6 NaN 7213 2517 9724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9734 48.086 NaN 994080 35 0 170190 0.327 -1 MPETTETVL 9 70 518.7471070197194 1035.4796611062386 2 518.7472534179688 MULTI HCD FTMS 0 0 0 9733 214877.25 0.2366166893129454 7 -0.21283721923828125 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 21.74664581756881 0.17247014374749275 1 TV{I|L} 3 -1 30.916 0 0 2.9857 0 0 704.267870017775 0 704.267870017775 0 21.211375162600703 0 0 0 0.3494850021680094 0 0.75 0 TV{I|L} 2.9857 + + 22 NaN NaN 237001.9 NaN 7214 2518 9733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9735 48.09 NaN 184450 35 0 39478 0.261 + 27771 TAVGHALVL 9 47 440.76609217268026 879.5176314121605 2 440.7662048339844 MULTI HCD FTMS 0 0 0 9733 92028.8046875 0.2799006996182699 6 -0.17615890502929688 2 Unmodified _TAVGHALVL_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 36.04419817259434 0.08350412372117409 1 V{I|L} 2 7 30.969 0 0 3.5211 0 0 649.3550317801278 0 649.3550317801278 0 -2.8997654084889035 -2.8997654084889035 0 0 1 0 0 0 + V{I|L} 3.5211 + + 16 + NaN NaN 111166.7 NaN 7215 2518 9733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9736 48.094 NaN 204760 35 0 13698 0.261 + 1341 AYPHNLMTF 9 56 555.2577602370291 1108.500967540858 2 555.258056640625 MULTI HCD FTMS 0 0 0 9733 93532.8984375 0.05702191123104193 44 -1.2656898498535156 3 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 52.268347100219714 0.028397529699942435 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}TT 8 5 52.391 0 0 4.7263 0 0 0 60.9865506468365 60.9865506468365 44.94370806477795 0 0 0 0 1.5941876774005248 2 0.7742275032520141 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}TT 4.7263 - 86 NaN NaN 110173.8 NaN 7216 2518 9733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9737 48.098 NaN 133680 35 0 15944 0.261 + 24733 RYLVISEKL 9 53 560.8397750929485 1119.6649972526968 2 560.8399047851562 MULTI HCD FTMS 0 0 0 9733 14801.5595703125 0.00763103874834893 50 -1.4366607666015625 4 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 12.240655878213236 0.2545997876781172 1 CSE[K{I|L}] 5 5 28.015 0 0 2.5021 0 0 541.397752830275 0 541.397752830275 0 21.56173420760375 0 0 0 0.8807196863200843 0 0.3494850021680094 0 CSE[K{I|L}] 2.5021 - 95 NaN NaN 101087.3 NaN 7217 2518 9733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9738 48.101 NaN 48299 35 0 5460.7 0.261 + 31145 VTVQVVVVR 9 36 499.82144658079096 997.628340228382 2 499.8213195800781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VTVQVVVVR_ ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB;nc|ENSG00000188677|Q9HBI1-3|PARVB 10.073929032068715 0.27331982688540024 1 {[TV]|[{I|L}S]}VQVV 6 3 23.901 0 0 2.3958 0 0 0 369.2262056940063 369.2262056940063 23.90092514408778 0 0 0 0 0 0 0 0 + {[TV]|[{I|L}S]}VQVV 2.3958 + + 15 + NaN NaN 105740.1 NaN 7218 2518 9733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9740 48.106 NaN 2078600 35 0 110130 0.326 + 34236 YPDRIMNTF 9 111 586.7737018509798 1171.5328507687595 2 586.77392578125 MULTI HCD FTMS 0 0 0 9739 1197254.625 0.2990119345198236 -4 0.10265731811523438 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 179.28349886687624 1.1259799814826369E-12 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 110.55 0 0 9.4365 9.4365 91.751 0 0 0 62.3704775700319 14.09256854528806 14.09256854528806 7.2614591151880035 0 3.274227503252014 1.5228787452803376 2.258582007194973 0.5994850021680094 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F} 9.4365;8.8167;8.4164;8.0525;8.0307;7.5179;7.4502;7.3519;7.2665;7.0788 +;+;-;-;-;-;-;-;-;- + 12465 + NaN NaN 406069.9 NaN 7219 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9741 48.11 NaN 881550 35 0 105570 0.261 + 22274 QPDQTRIVAL 10 85 570.8223000915153 1139.6300472498306 2 570.8223266601562 MULTI HCD FTMS 0 0 0 9739 513918.34375 0.765620834750556 3 -0.1030731201171875 2 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 57.72198328787511 0.049706386133502735 1 AV{I|L}RTED 7 9 40.711 0 0 3.5723 0 0 148.12120338282745 204.07781397037346 352.19901735320093 0 0 0 0 0 0 0 1.4291746928241125 0 AV{I|L}RTED 3.5723 - 710 + NaN NaN 241032.9 NaN 7220 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9742 48.114 NaN 151790 35 0 27087 0.262 + 25978 SPDSEVTSL 9 35 467.7218056345137 933.4290583358274 2 467.72174072265625 MULTI HCD FTMS 0 0 0 9739 84742.46875 0.146177312235212 7 -0.21966552734375 3 Unmodified _SPDSEVTSL_ ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8 30.636539890814138 0.10832830463492794 1 VTS{I|L} 4 5 54.993 0 0 5.8915 0 0 515.1857166974625 0 515.1857166974625 0 49.508272069161734 0 0 0 1.5 0 0.805462187404089 0 + VTS{I|L} 5.8915 + + 23 NaN NaN 106480.2 NaN 7221 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9743 48.118 NaN 245630 35 0 16311 0.261 + 12770 KYDPNVYSI 9 66 549.7770540871661 1097.5395552411321 2 549.7645263671875 MULTI HCD FTMS 0 0 0 9739 39626.56640625 0.506788772754386 3 -0.1030731201171875 4 Unmodified _KYDPNVYSI_ ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 18.373094154950223 0.20161688160436167 1 QVYADS{I|L} 7 7 45.961 0 0 4.1877 0 0 303.1540699689469 0 303.1540699689469 0 14.869032487601213 0 0 0 0.5 0 0 0 QVYADS{I|L} 4.1877 - 631 NaN NaN 121511.2 NaN 7222 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9744 48.121 NaN 142590 35 0 28685 0.261 -1 PHDTPPPVSSM 11 49 590.768245843717 1179.5219387542338 2 590.7670288085938 MULTI HCD FTMS 0 0 0 9739 67286.4765625 0.6091927486230392 -6 0.1534271240234375 5 Oxidation (M) _PHDTPPPVSSM(Oxidation (M))_ MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant 16.149105407346934 0.31637472687818013 1 STSVS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 7 -1 40.846 0 0 3.4629 0 0 466.2317066876969 0 466.2317066876969 0 33.3985760252164 0 0 0 0.8494850021680094 0 0 0 STSVS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3.4629 - 46 NaN NaN 100640.4 NaN 7223 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9745 48.124 NaN 91857 35 0 28208 0.261 + -1 CEIQCLEETV 10 38 640.7779193768916 1279.5412858205832 2 640.7787475585938 MULTI HCD FTMS 0 0 0 9739 47576.32421875 0.8482844364977259 4 -0.13635635375976562 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))EIQC(Carbamidomethyl (C))LEETV_ REV__WDFY3|p.W2344L|1|0.32|ENSG00000163625|chr4:84733572-84733572|C/A|missense_variant 1.4819007175156935 0.4674597685733628 1 Y 1 -1 1.9897 0 0 0.1555 0 0 656.774331330152 456.6829928033813 1113.4573241335333 0 0 0 0 0 0 0 0 0 Y 0.1555 - 2 + NaN NaN 107071.6 NaN 7224 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9746 48.128 NaN 147270 35 0 29841 0.262 + -1 DLCLMHAIL 9 45 543.2785319562198 1084.5425109792395 2 543.277587890625 MULTI HCD FTMS 0 0 0 9739 45830.73828125 0.6670231462936219 6 -0.19297409057617188 7 Carbamidomethyl (C) _DLC(Carbamidomethyl (C))LMHAIL_ REV__ENST00000358344.7_1_5:177637645-177637678:+|nuORF 11.640296217721598 0.25978676193971967 1 A{I|L}{I|L} 3 -1 29.693 0 0 2.7378 0 0 769.3267079084 0 769.3267079084 0 24.20818753952375 0 0 0 0.5 0 0 0 A{I|L}{I|L} 2.7378 + + 27 NaN NaN 108525.6 NaN 7225 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9747 48.131 NaN 55960 35 0 10274 0.261 + 10021 IEWGNNPMEI 10 30 601.7791386629317 1201.5437243926633 2 601.7780151367188 MULTI HCD FTMS 0 0 0 9739 13366.7021484375 0.06074237456705729 37 -1.0778656005859375 8 Unmodified _IEWGNNPMEI_ ENSG00000171246|ENST00000306773|NPTX1 2.735195868890462 0.4608258780945842 1 E{I|L} 2 8 20.969 0 0 1.7452 0 0 941.407030174025 0 941.407030174025 0 20.969100130080562 0 0 0 0 0 0 0 + E{I|L} 1.7452 + + 4 NaN NaN 89830.3 NaN 7226 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9748 48.134 NaN 164680 35 0 30092 0.264 -1 AYHCYVAICF 10 40 435.19117362518614 1302.5516914757584 3 435.1918640136719 MULTI HCD FTMS 0 0 0 9739 22604.083984375 0.727883507856202 -5 0.13295745849609375 9 2 Carbamidomethyl (C) _AYHC(Carbamidomethyl (C))YVAIC(Carbamidomethyl (C))F_ nc|ENSG00000142163|Q8WZA6|OR1E3 7.101721422024254 0.4377131641736035 1 AY 2 -1 40.846 0 0 3.1358 0 0 0 1065.4287149801132 1065.4287149801132 27.747111281963143 0 0 0 0 0.28872548999643577 1.6989700043360187 0 0 AY 3.1358 + + 22 + NaN NaN 111660 NaN 7227 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9749 48.138 NaN 115970 35 0 8874.1 0.261 -1 MPDVDLHM 8 56 487.2090227857459 972.4034926382918 2 487.20806884765625 MULTI HCD FTMS 0 0 0 9739 14182.333984375 0.29989920145880755 -7 0.173553466796875 10 Oxidation (M) _MPDVDLHM(Oxidation (M))_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 19.438996006549623 0.45076845602799126 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WE]VAP 7 -1 28.102 0 0 2.89 0 0 0 142.99587480065432 142.99587480065432 15.883863177665631 0 0 0 0 0 1.5228787452803376 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WE]VAP 2.89 - 114 NaN NaN 105085.8 NaN 7228 2519 9739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9751 48.143 NaN 532680 35 0 96746 0.327 + 24886 RYQQWMERF 9 67 448.54837673607517 1342.6233008084255 3 448.5487060546875 MULTI HCD FTMS 0 0 0 9750 81818.2890625 0.6005835777475902 -2 0.05648040771484375 1 Unmodified _RYQQWMERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 28.233623360808718 0.11935903763491834 1 WMER{M(Oxidation (M))|F} 5 4 36.943 0 0 2.7516 0 0 575.2813544934203 0 575.2813544934203 0 19.419628234359575 0 0 0 1.4247425010840047 0 0.3054621874040891 0 + WMER{M(Oxidation (M))|F} 2.7516 + + 123 + NaN NaN 174645.6 NaN 7229 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9752 48.147 NaN 230930 35 0 55528 0.261 + 1462 AYSSISHMAL 10 55 540.2631356722278 1078.5117184112555 2 540.2636108398438 MULTI HCD FTMS 0 0 0 9750 40814.08203125 0.4278101261614259 4 -0.11967849731445312 2 Unmodified _AYSSISHMAL_ ENSG00000198886|ENST00000361381|MT-ND4 10.823927491677226 0.4098686510432541 1 AA{I|L} 3 7 27.619 0 0 2.5609 0 0 805.3409901349625 0 805.3409901349625 0 13.640078085766092 0 0 0 0.3807196863200844 0 0 0 AA{I|L} 2.5609 - 92 NaN NaN 122917 NaN 7230 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9753 48.151 NaN 200140 35 0 20406 0.261 + 8662 HFIAEHYMF 9 53 605.7705008089107 1209.5264486846213 2 605.7706298828125 MULTI HCD FTMS 0 0 0 9750 95803.375 0.6155931381132221 -5 0.13927459716796875 3 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 64.23631603340823 0.01165516075559909 1 H{M(Oxidation (M))|F}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 63.568 0 0 5.2556 5.2556 90.674 0 0 0 37.37002527416834 9.137342758552691 9.137342758552691 31.26410021363376 0 2.0994850021680094 0 0 0 + + H{M(Oxidation (M))|F}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}AYYY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.2556;2.6708 +;- + 66 + NaN NaN 123486.1 NaN 7231 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9754 48.154 NaN 133640 35 0 9200.1 0.261 + 31176 VVDTHPHEIT 10 43 574.2895153712693 1146.5644778093385 2 574.2722778320312 MULTI HCD FTMS 0 0 0 9750 12406.2919921875 1 0 0 4 Unmodified _VVDTHPHEIT_ REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant;REV__ENSG00000082258|ENST00000264157|CCNT2;REV__ENST00000475094.1_1_2:135676424-135700249:+|nuORF;REV__nc|ENSG00000082258|O60583-2|CCNT2 3.5964929083625545 0.45626689593999237 1 {M(Oxidation (M))|F}A{[CP]|[EA]}[QA]N 7 -1 12.72 0 0 1.1094 0 0 397.26873997244707 0 397.26873997244707 0 7.235381958267553 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A{[CP]|[EA]}[QA]N 1.1094 - 44 NaN NaN 111616.5 NaN 7232 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9755 48.158 NaN 198790 35 0 12473 0.261 + 12771 KYDPNVYSI 9 72 549.7770540871661 1097.5395552411321 2 549.76416015625 MULTI HCD FTMS 0 0 0 9750 25263.708984375 0.32310051646049215 4 -0.11967849731445312 5 Unmodified _KYDPNVYSI_ ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 13.614867670302875 0.2427269026982664 1 QVYADS{I|L} 7 7 39.941 0 0 3.6391 0 0 303.15352065254064 0 303.15352065254064 0 13.029644954411808 0 0 0 0.5 0 0 0 QVYADS{I|L} 3.6391 - 409 NaN NaN 116630 NaN 7233 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9756 48.161 NaN 210540 35 0 41522 0.262 + 23500 RMRSKETLQLI 11 55 458.9344834295646 1373.7816208888937 3 458.93450927734375 MULTI HCD FTMS 0 0 0 9750 58488.31640625 0.5292803227105697 16 -0.4758872985839844 6 Unmodified _RMRSKETLQLI_ REV__ENST00000372447.7_1_9:132589634-132589790:-|nuORF 2.2527281973983926 0.4090409658946738 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 26.198 0 0 1.907 0 0 982.5330754002084 0 982.5330754002084 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 1.907 - 36 NaN NaN 115129.2 NaN 7234 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9757 48.164 NaN 200300 35 0 23995 0.261 + 3830 EPGAAVPSLF 10 51 494.2611546184973 986.5077563037946 2 494.2607421875 MULTI HCD FTMS 0 0 0 9750 54242.18359375 1 0 0 7 Unmodified _EPGAAVPSLF_ ENST00000430010.1_1_2:55451599-55452256:+|nuORF 13.90604991867851 0.3810395177745597 1 S{I|L}{M(Oxidation (M))|F} 3 7 23.901 0 0 2.4228 0 0 621.3134022443375 0 621.3134022443375 0 -1.3155999968328302 -1.3155999968328302 0 0 0.8494850021680094 0 0 0 + S{I|L}{M(Oxidation (M))|F} 2.4228 + + 55 NaN NaN 115224.8 NaN 7235 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9758 48.168 NaN 70270 35 0 4611.1 0.261 + 7363 FVEAEYLR 8 47 513.7670350701638 1025.5195172071276 2 513.7670288085938 MULTI HCD FTMS 0 0 0 9750 4931.87353515625 0.06331636643505421 7 -0.2131195068359375 8 Unmodified _FVEAEYLR_ REV__ENSG00000170054|ENST00000674397|SERPINA9;REV__nc|ENSG00000170054|Q86WD7-4|SERPINA9;REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9;REV__nc|ENSG00000170054|Q86WD7-6|SERPINA9;REV__nc|ENSG00000170054|Q86WD7-7|SERPINA9 4.3292370932331545 0.5355693454741696 1 {I|L}{I|L} 2 -1 17.959 0 0 1.7512 0 0 781.3404408185562 0 781.3404408185562 0 12.474250108400469 0 0 0 0 0 0 0 {I|L}{I|L} 1.7512 - 17 NaN NaN 112467.9 NaN 7236 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9759 48.171 NaN 164740 35 0 10300 0.261 + 5799 FPAVGMHSL 9 51 487.7418850496914 973.4692171661828 2 487.7417907714844 MULTI HCD FTMS 0 0 0 9750 48509.5 0.8540974688149724 -1 0.036617279052734375 9 Oxidation (M) _FPAVGM(Oxidation (M))HSL_ ENSG00000167778|ENST00000301463|SPRYD3 74.39630413441286 0.00766564230304328 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WEVAP 7 7 60.015 0 0 6.165 0 0 0 144.04948713748846 144.04948713748846 41.11387589830301 0 0 0 0 0.7742275032520141 1.3979400086720375 1.4604093769761874 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WEVAP 6.165 - 214 NaN NaN 110555.7 NaN 7237 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9760 48.174 NaN 55922 35 0 6365.8 0.261 + 28826 TVEEHLYFY 9 36 600.7799460821974 1199.5453392311947 2 600.7785034179688 MULTI HCD FTMS 0 0 0 9750 16021.8271484375 0.364266383288315 6 -0.18304824829101562 10 Unmodified _TVEEHLYFY_ ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12 2.0597508629832335 0.3354026079994024 1 DQ 2 9 7.9588 0 0 0.66348 0 0 342.2042270259197 611.2304171197874 953.4346441457071 0 0 0 0 0 0 0 0 0 DQ 0.66348 - 14 + NaN NaN 95277.1 NaN 7238 2520 9750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9762 48.179 NaN 1570300 35 0 376660 0.327 + 15419 LPDKSIASL 9 79 472.27653176128445 942.5385105893689 2 472.2764892578125 MULTI HCD FTMS 0 0 0 9761 1129967.125 0.591416478441588 5 -0.146484375 1 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 100.0907132914201 0.004261551473353346 1 {I|L}PD[KS]{I|L}AS{I|L} 9 0 + 90.688 0 0 9.6217 9.6217 94.62 0 0 0 25.360279740530828 10.387254899964361 10.387254899964361 10.387254899964361 0 2.6237125054200234 1.5228787452803376 1.8129529932484498 0 + + {I|L}PD[KS]{I|L}AS{I|L};[{I|L}P]D[KS]{I|L}AS{I|L};[{I|L}P]D[KS]A{I|L}S{I|L};[DP]{I|L}[KS]{I|L}AS{I|L};[{I|L}P]D[KS]AS{I|L}{I|L};[{I|L}P]D[KS]SA{I|L}{I|L};{I|L}PD[KS]ATV{I|L};{[TV]|[{I|L}S]}[VG][PS]{I|L}AS{I|L};[DP]{I|L}[KS]A{I|L}S{I|L};{[SA]|[TG]}VV[PS]{I|L}AS{I|L} 9.6217;8.5196;6.9796;5.947;5.7501;5.5632;5.4202;5.3936;4.407;4.0132 +;+;-;-;-;-;-;-;-;- + 406 + NaN NaN 327065.3 NaN 7239 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9763 48.184 NaN 468940 35 0 105480 0.261 + 3878 EPNPDDPLM 9 59 522.2210890446795 1042.427625156159 2 522.2210083007812 MULTI HCD FTMS 0 0 0 9761 285088.65625 0.9665620554415831 4 -0.11979293823242188 2 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 75.76082778847304 0.0072241045649327805 1 DP{I|L}{M(Oxidation (M))|F} 4 5 54.385 0 0 5.2172 0 0 552.2199574201187 0 552.2199574201187 0 40.96910013008056 0 0 0 1.7302046884880937 0 1.2302046884880937 0 + DP{I|L}{M(Oxidation (M))|F} 5.2172 + + 104 NaN NaN 164641.5 NaN 7240 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9764 48.187 NaN 257630 35 0 33286 0.261 + 28369 TPDWAERQL 9 57 558.2776664057708 1114.5407798783415 2 558.2778930664062 MULTI HCD FTMS 0 0 0 9761 167482.125 0.6107468270823105 3 -0.0831146240234375 3 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 81.9152076656658 0.005232646987511684 1 TPDWAERQ{I|L} 9 0 + 90.46 0 0 8.1164 8.1164 89.549 0 0 0 6.198091682105712 6.198091682105712 6.198091682105712 6.198091682105712 0 3.138210492164445 0 0 1.0484550065040281 + + TPDWAERQ{I|L};[TP]DWAERQ{I|L};[TP]DWAER[AG]{I|L};[DP]TWAERQ{I|L};[DP]TWAER[AG]{I|L};[DP]WTAERQ{I|L};[DP]WTAER[AG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP]AERQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP]AER[AG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[PA]EERQ{I|L} 8.1164;7.5603;6.7341;6.6836;5.8574;5.3137;4.4875;4.4416;3.6154;3.0602 +;+;-;-;-;-;-;-;-;- + 365 + NaN NaN 142445 NaN 7241 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9765 48.191 NaN 328210 35 0 37987 0.261 + -1 IPMIGMPKEI 10 61 572.8087967908872 1143.6030406485743 2 572.8088989257812 MULTI HCD FTMS 0 0 0 9761 171583.171875 0.1336356957375203 10 -0.29026031494140625 4 Oxidation (M) _IPM(Oxidation (M))IGMPKEI_ REV__MYH6|p.S533P|1|0.1|ENSG00000197616|chr14:23399022-23399022|A/G|missense_variant 36.506200033944 0.17572556831573002 1 {I|L}HS{I|L} 4 -1 40.433 0 0 3.5356 0 0 675.3340272706259 0 675.3340272706259 0 18.555235085008583 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {I|L}HS{I|L} 3.5356 - 212 NaN NaN 143297.6 NaN 7242 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9766 48.194 NaN 276950 35 0 21639 0.261 + 24199 RYFKGPELL 9 69 561.8212326354909 1121.6279123377817 2 561.8187866210938 MULTI HCD FTMS 0 0 0 9761 122789.9609375 0.1394375889831892 10 -0.29026031494140625 5 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 65.47368725323818 0.010552856507075443 1 [YR]{M(Oxidation (M))|F}KGPE{I|L}{I|L} 9 0 + 77.471 0 0 6.907 6.907 87.723 0 0 0 5.6424927368725974 50.129106573952456 5.6424927368725974 6.681886243466792 0 1.8851518780601921 0 0.7742275032520141 0.3252574989159953 + + [YR]{M(Oxidation (M))|F}KGPE{I|L}{I|L};[EP]G{I|L}VVGPE{I|L}{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L};{[QN]|[E{I|L}]|[KN]}PVRGPE{I|L}{I|L};[EP]{I|L}GVVGPE{I|L}{I|L};[YR]{M(Oxidation (M))|F}KGP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}PGVVGPE{I|L}{I|L};[YR]{M(Oxidation (M))|F}K{I|L}GPE{I|L};[EP]G{I|L}VVG{I|L}PE{I|L};[EP]{I|L}V[VG]GPE{I|L}{I|L} 6.907;6.3113;5.9891;5.9444;5.8859;5.7914;5.7505;5.6776;5.3934;5.2627 +;-;-;-;-;-;-;-;-;- + 1274 NaN NaN 125850.1 NaN 7243 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9767 48.197 NaN 449440 35 0 79394 0.261 -1 ESEHSMDTLL 10 64 589.2554832117141 1176.4964134902282 2 589.2556762695312 MULTI HCD FTMS 0 0 0 9761 73640.1171875 0.14400134182188346 -12 0.33736419677734375 6 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 6.723162845929126 0.4397169348982109 1 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 35.962 0 0 3.0567 0 0 496.2160816876969 0 496.2160816876969 0 11.282672239435314 0 0 0 0.8494850021680094 0 0.3054621874040891 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 3.0567 - 91 NaN NaN 157836.3 NaN 7244 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9768 48.201 NaN 158110 35 0 23346 0.261 + 4051 ESFYGIGTTR 10 58 565.7756978654514 1129.5368427977028 2 565.7786865234375 MULTI HCD FTMS 0 0 0 9761 15891.38671875 0.409349814005311 1 -0.0298919677734375 7 Unmodified _ESFYGIGTTR_ ENST00000274712.7_1_5:140080440-140083534:+|nuORF 7.101721422024254 0.4377131641736035 1 {M(Oxidation (M))|F} 1 9 6.9897 0 0 0.61881 0 0 379.13078918617776 600.3108614557249 979.4416506419027 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.61881 + + 22 + NaN NaN 104526.1 NaN 7245 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9769 48.204 NaN 56396 35 0 8739.6 0.261 + -1 MFTRFNEEI 9 30 601.7791386629317 1201.5437243926633 2 601.7796630859375 MULTI HCD FTMS 0 0 0 9761 37379.04296875 0.16986178069594757 39 -1.1199302673339844 8 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 2.9952420565917617 0.3283108881486655 1 VE{I|L} 3 -1 26.198 0 0 2.1804 0 0 842.3388539044937 0 842.3388539044937 0 24.93882771791494 0 0 0 0 0 0 0 VE{I|L} 2.1804 - 9 NaN NaN 94436.9 NaN 7246 2521 9761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9771 48.209 NaN 2487700 35 0 365590 0.327 + 3025 EADPYKAVL 9 108 503.2662083870538 1004.5178638409076 2 503.2664489746094 MULTI HCD FTMS 0 0 0 9770 1610543.75 0.7013390399863437 2 -0.05322265625 1 Unmodified _EADPYKAVL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 103.35351024395868 0.004027461563756449 1 {[CP]|[EA]}DPYKAV{I|L} 9 0 + 58.533 0 0 5.8269 5.8269 89.045 0 0 0 8.569233304795034 36.685071558340994 8.569233304795034 11.532125137753432 0 2.247425010840047 0 2.6549471895720984 0 + + {[CP]|[EA]}DPYKAV{I|L};{[CP]|[EA]}DPYKA{I|L}V;{[CP]|[EA]}DPYKVA{I|L};{[CP]|[EA]}PDYKAV{I|L};{[CP]|[EA]}DPYKG{I|L}{I|L};{[CP]|[EA]}DPY{I|L}GK{I|L};{[CP]|[EA]}DPY{I|L}AVK;{[CP]|[EA]}DPY{I|L}AKV;{[CP]|[EA]}PDYKA{I|L}V;{[CP]|[EA]}PDYKVA{I|L} 5.8269;4.6789;4.5102;4.3446;3.6545;3.5431;3.3183;3.2096;3.1966;3.0279 +;-;-;-;-;-;-;-;-;- + 1518 NaN NaN 473483.8 NaN 7247 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9772 48.213 NaN 1423400 35 0 84927 0.261 + 28555 TPTEVKDYL 9 122 533.2764337301227 1064.5383145270453 2 533.2897338867188 MULTI HCD FTMS 0 0 0 9770 388799.375 0.35701520393194847 5 -0.14666366577148438 2 Unmodified _TPTEVKDYL_ ENSG00000106588|ENST00000223321|PSMA2 47.7319792270244 0.034743597693959835 1 TPTEV 5 4 46.146 0 0 4.3348 0 0 0 534.2570894830686 534.2570894830686 6.247109214559387 0 0 0 0 0.805462187404089 0.958607314841775 0.8494850021680094 0 + TPTEV 4.3348 + + 4100 + NaN NaN 315059.3 NaN 7248 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9773 48.217 NaN 325010 35 0 36196 0.261 + 18198 MPDLPEKL 8 64 479.7494054996792 957.4842580661584 2 479.7492370605469 MULTI HCD FTMS 0 0 0 9770 216190.375 0.7039694987240086 6 -0.18019485473632812 3 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 63.960520009940105 0.04134249892021528 1 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 59.505 0 0 6.2147 6.2147 85.708 0 0 0 4.873343961715548 4.873343961715548 4.873343961715548 4.873343961715548 0 2.0669015600442577 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L} 6.2147;5.7057 +;+ + 114 + NaN NaN 129697.9 NaN 7249 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9774 48.221 NaN 228280 35 0 12807 0.261 + 22551 QSGGVVRIAHV 11 67 561.8212326354909 1121.6279123377817 2 562.8268432617188 MULTI HCD FTMS 0 0 0 9770 108858.9765625 0.15331204297242046 8 -0.2302398681640625 4 Unmodified _QSGGVVRIAHV_ ENSG00000142798|ENST00000374695|HSPG2 7.101721422024254 0.3877749288398915 1 QA{I|L} 3 9 17.065 0 0 1.5214 0 0 126.08380101548933 680.3394869440061 806.4232879594955 0 0 0 0 0 0 0 0 0.3252574989159953 QA{I|L} 1.5214 - 235 + NaN NaN 116857.8 NaN 7250 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9775 48.224 NaN 143330 35 0 43231 0.261 + -1 LVMRSDCWC 9 37 621.7559101926153 1241.4972674520304 2 621.75634765625 MULTI HCD FTMS 0 0 0 9770 102149.2734375 0.7309689936391962 2 -0.05322265625 5 2 Carbamidomethyl (C),Oxidation (M) _LVM(Oxidation (M))RSDC(Carbamidomethyl (C))WC(Carbamidomethyl (C))_ REV__ENST00000541451.5_3_16:2198830-2200035:+|nuORF;REV__ENST00000565592.5_1_16:2190927-2200035:+|nuORF 7.910154910731844 0.2910521888787154 1 [{I|L}V]{I|L}DE 5 -1 62.703 0 0 5.0506 0 0 0 669.1696871393186 669.1696871393186 36.73393743112328 0 0 0 0 1.9247425010840047 1.6989700043360187 0.4247425010840047 0 [{I|L}V]{I|L}DE 5.0506 - 31 + NaN NaN 102358.9 NaN 7251 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9776 48.227 NaN 229000 35 0 82518 0.262 + 4256 EVHHPICAF 9 38 526.7514025833042 NaN 0 526.7615966796875 PEAK HCD FTMS 0 0 0 9770 11393.9765625 1 0 0 6 Unmodified _EVHHPICAF_ ENSG00000112414|ENST00000367609|ADGRG6;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6 8.593279151180031 0.2536050107310812 1 AE{I|L}D 4 8 23.8 0 0 2.2635 0 0 165.05928982381482 455.21555505924067 620.2748448830555 0 0 0 0 0 0 0 0.4247425010840047 0 AE{I|L}D 2.2635 - 18 + NaN NaN 117469.6 NaN 7252 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9777 48.231 NaN 369380 35 0 55629 0.261 -1 CSWEEPVL 8 66 510.22985795404065 1018.4451629748813 2 510.22998046875 MULTI HCD FTMS 0 0 0 9770 128342.7265625 0.6857253615468631 -4 0.12293624877929688 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))SWEEPVL_ ENST00000381440.4_1_16:19128639-19128831:+|nuORF 12.531546534597751 0.5015908124873912 1 EPV{I|L} 4 -1 30.433 0 0 2.9882 0 0 562.189256736525 0 562.189256736525 0 13.979400086720375 0 0 0 0.5 0 0 0 EPV{I|L} 2.9882 + + 50 NaN NaN 143843.5 NaN 7253 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9778 48.234 NaN 78789 35 0 9498.5 0.261 + 27722 TASNVEEAF 9 35 484.2216654852611 966.4287780373222 2 484.2214050292969 MULTI HCD FTMS 0 0 0 9770 44480.1015625 0.8668189810183574 1 -0.033283233642578125 8 Unmodified _TASNVEEAF_ ENSG00000104388|ENST00000262646|RAB2A;ENST00000396696.1_1_8:61504408-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;ENST00000530071.5_1_8:61496609-61533325:+|nuORF;nc|ENSG00000104388|P61019-2|RAB2A 22.736283301280096 0.1639198954644489 1 {M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 4 6 48.175 0 0 4.9849 0 0 454.21800429511876 0 454.21800429511876 0 47.2062251842808 0 0 0 1.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 4.9849 - 45 NaN NaN 91841 NaN 7254 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9779 48.237 NaN 76101 35 0 8298.8 0.261 + 14157 LAFQEDSRSTL 11 34 633.8202045043731 1265.6258560755462 2 633.8203125 MULTI HCD FTMS 0 0 0 9770 75814.8984375 1 0 0 9 Unmodified _LAFQEDSRSTL_ ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L 19.986897341741983 0.28293591992651296 1 DEQVT{I|L} 6 8 41.988 0 0 3.3175 0 0 562.3065663068375 0 562.3065663068375 0 38.49275660196689 0 0 0 0.4247425010840047 0 0.5 0 DEQVT{I|L} 3.3175 - 42 NaN NaN 99461.8 NaN 7255 2522 9770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9781 48.242 NaN 447640 35 0 147680 0.327 -1 KYMPNVKVAVF 11 51 437.9090113501808 1310.7052046507424 3 437.9090576171875 MULTI HCD FTMS 0 0 0 9780 139121.078125 0.9729296333719901 1 -0.019939422607421875 1 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 20.871137199558856 0.2752315090543355 1 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.3054 0 0 1046.554429270064 0 1046.554429270064 0 14.731975075880328 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3054 + + 28 NaN NaN 161894.2 NaN 7256 2523 9780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9782 48.247 NaN 288080 35 0 31180 0.261 + 24861 RYQDIIHSI 9 66 572.8087967908872 1143.6030406485743 2 572.808349609375 MULTI HCD FTMS 0 0 0 9780 92212.546875 0.0718187437771967 12 -0.3530693054199219 2 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 31.26834338654808 0.10542797264966089 1 {I|L}HS{I|L} 4 5 40.433 0 0 3.5356 0 0 675.3337269513687 0 675.3337269513687 0 23.556226402986923 0 0 0 0.4247425010840047 0 0.4247425010840047 0 + {I|L}HS{I|L} 3.5356 + + 327 NaN NaN 130487.8 NaN 7257 2523 9780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9783 48.251 NaN 148660 35 0 15610 0.261 + -1 PRMMPQAF 8 44 497.2356134968103 992.4566740604206 2 497.2356872558594 MULTI HCD FTMS 0 0 0 9780 102978.3828125 1 0 0 3 Oxidation (M) _PRM(Oxidation (M))MPQAF_ REV__ENSG00000065609|ENST00000369694|SNAP91;REV__nc|ENSG00000065609|O60641-3|SNAP91;REV__nc|ENSG00000065609|O60641-4|SNAP91 24.67388899826682 0.4122521268485776 1 {M(Oxidation (M))|F}QA{M(Oxidation (M))|F} 4 -1 46.23 0 0 4.6581 0 0 481.2278004376969 0 481.2278004376969 0 39.997862482866786 0 0 0 1.5 0 0 0.3807196863200844 {M(Oxidation (M))|F}QA{M(Oxidation (M))|F} 4.6581 - 69 NaN NaN 109308.7 NaN 7258 2523 9780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9784 48.254 NaN 181970 35 0 22600 0.261 + 927 AYDLFVLF 8 51 494.2611546184973 986.5077563037946 2 494.7539367675781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AYDLFVLF_ REV__ENSG00000163354|ENST00000368424|DCST2;REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 9.347437153973935 0.5250182646323369 1 T{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.1256 0 0 720.4144881745186 0 720.4144881745186 0 11.303337684950064 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 2.1256 - 40 + NaN NaN 118013.2 NaN 7259 2523 9780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9785 48.257 NaN 71255 35 0 12309 0.261 + 27772 TAVGHALVL 9 44 440.76609217268026 879.5176314121605 2 440.7657470703125 MULTI HCD FTMS 0 0 0 9780 42429.375 0.1290466804083028 11 -0.3167381286621094 5 Unmodified _TAVGHALVL_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 11.640296217721598 0.25978676193971967 1 V{I|L} 2 7 28.366 0 0 3.2251 0 0 649.3549945209988 0 649.3549945209988 0 16.37591837382481 0 0 0 0.7396518287104438 0 0 0 + V{I|L} 3.2251 + + 17 NaN NaN 106697 NaN 7260 2523 9780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9787 48.262 NaN 5173500 35 0 260120 0.327 + 34237 YPDRIMNTF 9 133 586.7737018509798 1171.5328507687595 2 586.7742309570312 MULTI HCD FTMS 0 0 0 9786 3621356.25 0.9044264396956946 1 -0.036678314208984375 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 176.4269993864032 3.292532597148328E-10 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 103.31 0 0 8.8179 8.8179 94.477 0 0 0 52.69161824066032 13.46787486224656 13.46787486224656 12.703037561203843 0 2.6307196863200843 1.6989700043360187 1.763632853717045 0.9163865622122672 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};YPCVS{[QN]|[E{I|L}]|[KN]}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRYPNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 8.8179;7.7336;7.0965;6.318;6.3105;6.3078;6.0767;5.9108;5.8941;5.8092 +;-;+;-;-;-;-;-;-;- + 18786 + NaN NaN 679240.6 NaN 7261 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9788 48.267 NaN 296440 35 0 29146 0.261 + 22275 QPDQTRIVAL 10 65 570.8223000915153 1139.6300472498306 2 570.8223266601562 MULTI HCD FTMS 0 0 0 9786 157178.328125 0.23415977313761585 8 -0.23736190795898438 2 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 20.41453444215458 0.3201613495159799 1 AV{I|L}[VG]{[ET]|[MV]}D 8 9 20.891 0 0 1.8331 0 0 148.12065326540773 204.07772241763908 352.19837568304683 0 0 0 0 0 0 0 1 0 AV{I|L}[VG]{[ET]|[MV]}D 1.8331 - 121 + NaN NaN 129747 NaN 7262 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9789 48.271 NaN 340380 35 0 46413 0.261 + 12829 KYFAQALKL 9 69 541.3237372135088 1080.6329214938175 2 541.3238525390625 MULTI HCD FTMS 0 0 0 9786 216551.359375 0.9751348231945991 -1 0.019939422607421875 3 Unmodified _KYFAQALKL_ ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF 75.76082778847304 0.0072241045649327805 1 KY{M(Oxidation (M))|F}AQA{I|L}K{I|L} 9 0 + 65.06 0 0 6.0205 6.0205 86.605 0 0 0 7.941701612114983 7.941701612114983 7.941701612114983 7.941701612114983 0 2.4247425010840047 0 0 0 + + KY{M(Oxidation (M))|F}AQA{I|L}K{I|L};[YK]{M(Oxidation (M))|F}AQA{I|L}K{I|L};KY{M(Oxidation (M))|F}A[AG]A{I|L}K{I|L};[YK]{M(Oxidation (M))|F}AQA{I|L}{I|L}K 6.0205;5.2856;5.1684;5.0967 +;+;-;- + 274 + NaN NaN 131433.9 NaN 7263 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9790 48.274 NaN 362650 35 0 22507 0.261 + 22544 QSFDKEWVA 9 63 555.268257465777 1108.5219619983538 2 555.2559204101562 MULTI HCD FTMS 0 0 0 9786 99607.5234375 1 0 0 4 Unmodified _QSFDKEWVA_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 40.23920728925047 0.06424668180817725 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 8 22.029 0 0 1.9872 0 0 695.3597133184695 0 695.3597133184695 0 0.3073064928559788 0 0 0 0.805462187404089 0 0.7742275032520141 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 1.9872 - 194 + NaN NaN 137067.5 NaN 7264 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9791 48.277 NaN 80341 35 0 8202.6 0.261 + 12551 KSNMESFNTF 10 39 602.7686066404392 1203.5226603476783 2 602.768310546875 MULTI HCD FTMS 0 0 0 9786 45899.82421875 0.8500658003395386 1 -0.036678314208984375 5 Unmodified _KSNMESFNTF_ ENSG00000143498|ENST00000352967|TAF1A 11.494710602746466 0.4035943721457025 1 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4 6 27.92 0 0 2.3198 0 0 676.3170643537125 0 676.3170643537125 0 6.9504625720438895 0 0 0 1.0484550065040281 0 0.4247425010840047 0 + {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 2.3198 + + 18 NaN NaN 94270 NaN 7265 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9792 48.281 NaN 109960 35 0 9841.5 0.264 + 35654 YYIFIVETIC 10 40 421.88316488703373 NaN 0 421.8729248046875 PEAK HCD FTMS 0 0 0 9786 4125.3173828125 0.9509042293186645 -1 0.019939422607421875 6 Unmodified _YYIFIVETIC_ ENSG00000168418|ENST00000308251|KCNG4 2.0860074813731053 0.33839895573887124 1 Y 1 9 5.4846 0 0 0.65156 0 0 543.6200457391081 132.04543481998283 675.665480559091 0 0 0 0 0 0 0 0 0 + Y 0.65156 + + 2 + NaN NaN 112542.8 NaN 7266 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9793 48.284 NaN 177770 35 0 15346 0.261 + 9728 HYAALAHYF 9 47 546.7669806796941 1091.5194084261882 2 546.7554931640625 MULTI HCD FTMS 0 0 0 9786 42836.01171875 0.6162282870659043 2 -0.0633697509765625 7 Unmodified _HYAALAHYF_ ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2 45.7499826716795 0.03894913563566938 1 HYARV[NS]V{M(Oxidation (M))|F} 9 5 + 40.301 0 0 3.6922 3.6922 83.476 0 0 0 9.933787369250169 2.693409159737854 2.693409159737854 8.991662398603136 0 1.6989700043360187 0 0 0 HYARV[NS]V{M(Oxidation (M))|F};HYA[RD][KG]V{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}ET[YK]Y{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HT][WP]Y{M(Oxidation (M))|F} 3.6922;2.8684;1.9752;1.2811 -;-;-;- 119 + NaN NaN 113593.8 NaN 7267 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9794 48.287 NaN 71135 35 0 6369 0.261 -1 LYKMLSENF 9 41 580.7868278211738 1159.5591027091475 2 580.786865234375 MULTI HCD FTMS 0 0 0 9786 15607.90234375 0.406677778417866 1 -0.036678314208984375 8 Oxidation (M) _LYKM(Oxidation (M))LSENF_ ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF 29.84058131909904 0.11198220037953927 1 SEN{M(Oxidation (M))|F} 4 -1 38.175 0 0 3.2922 0 0 664.3612715822812 0 664.3612715822812 0 33.571231544599485 0 0 0 0.9247425010840047 0 0 0 SEN{M(Oxidation (M))|F} 3.2922 + + 47 NaN NaN 93674.8 NaN 7268 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9795 48.291 NaN 79092 35 0 23803 0.261 + -1 WREDVKSCD 9 31 597.7651790657003 NaN 0 597.7656860351562 PEAK HCD FTMS 0 0 0 9786 15190.0947265625 0.446121272173763 1 -0.036678314208984375 9 Carbamidomethyl (C) _WREDVKSC(Carbamidomethyl (C))D_ REV__ENSG00000127554|ENST00000248114|GFER;REV__nc|ENSG00000127554|P55789-2|GFER 1.844237919475145 0.28630992268396543 1 W 1 -1 0.9691 0 0 0.081197 0 0 615.2593487546443 389.16169153385005 1004.4210402884944 0 0 0 0 0 0 0 0 0 W 0.081197 + + 1 + NaN NaN 90078 NaN 7269 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9796 48.294 NaN 192490 35 0 37005 0.264 -1 0 64 404.15796224311214 403.15068577651215 1 404.16748046875 MULTI HCD FTMS 0 0 0 9786 4295.462890625 0.7242859815127799 -1 0.019939422607421875 10 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 4.2142 0 0 238.07170430854183 0 238.07170430854183 0 12.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 4.2142 - 9 + NaN NaN 126632.1 NaN 7270 2524 9786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9798 48.299 NaN 342540 35 0 31809 0.327 -1 KYLEMIYSM 9 61 605.2806176118941 1208.546682290588 2 605.7710571289062 MULTI HCD FTMS 0 0 0 9797 18391.8671875 0.416026506556172 -18 0.5174293518066406 1 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 1 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 49.263 0 0 4.0762 0 0 404.24299819160314 0 404.24299819160314 0 13.851518780601921 0 0 0 2.004432191740108 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.0762 + + 219 NaN NaN 141883 NaN 7271 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9799 48.303 NaN 354360 35 0 22456 0.261 + 22545 QSFDKEWVA 9 60 555.268257465777 1108.5219619983538 2 555.2682495117188 MULTI HCD FTMS 0 0 0 9797 81290.140625 0.8161044248430344 1 -0.026691436767578125 2 Unmodified _QSFDKEWVA_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 32.78568957990786 0.09846250359632436 1 {[RE]|[WV]}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CA]|SS}VA 9 6 + 26.99 0 0 2.4348 2.4348 81.882 0 0 0 6.0211404039832 8.645410728492653 6.0211404039832 6.879165495209282 0 0 1.5228787452803376 0.2614393726401688 0.805462187404089 {[RE]|[WV]}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CA]|SS}VA;{[RE]|[WV]}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}A;{[RE]|[WV]}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[ES]|[DT]|[{I|L}C]};{[QS]|[NT]}{M(Oxidation (M))|F}D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}WVA;{[RE]|[WV]}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[AG]{[ES]|[DT]|[{I|L}C]} 2.4348;1.8142;1.6106;0.8418;0.77502 -;-;-;+;- + 294 NaN NaN 141462.4 NaN 7272 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9800 48.307 NaN 266250 35 0 77924 0.261 + 1377 AYPHRLNLF 9 50 565.8088247578374 1129.6030965824748 2 566.31005859375 MULTI HCD FTMS 0 0 0 9797 52854.5703125 1 0 0 3 Unmodified _AYPHRLNLF_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 8 23.188 0 0 2.0527 0 0 730.4233928605468 0 730.4233928605468 0 3.182503180159344 0 0 0 0 0 0 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.0527 - 20 NaN NaN 142771.1 NaN 7273 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9801 48.311 NaN 302640 35 0 43751 0.261 + 32103 VYSAGVYRL 9 54 514.2822154144749 1026.5498778957497 2 514.2819213867188 MULTI HCD FTMS 0 0 0 9797 99765.59375 0.5461816629008491 -2 0.05661773681640625 4 Unmodified _VYSAGVYRL_ ENSG00000176248|ENST00000323927|ANAPC2;nc|ENSG00000176248|Q9UJX6-2|ANAPC2 96.11092074494114 0.00436583732602279 1 [YV]SAGVYR{I|L} 9 0 + 86.806 0 0 8.456 8.456 93.172 0 0 0 4.6056481673603 4.6056481673603 4.6056481673603 9.973024840566467 0 2.368415180652539 2 0.4247425010840047 0 + + [YV]SAGVYR{I|L};[YV]SQVYR{I|L};[YV]SAR{[VA]|[{I|L}G]}[YV];[YV]SAG[R{I|L}][YV];[YV]SQ[R{I|L}][YV] 8.456;7.4845;5.5598;5.0943;4.1489 +;-;-;-;- + 270 + NaN NaN 132401.3 NaN 7274 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9802 48.314 NaN 207180 35 0 42296 0.261 + 15731 LPEYNPRTL 9 54 551.798635658812 1101.582718384424 2 551.7997436523438 MULTI HCD FTMS 0 0 0 9797 48151.765625 0.5123265749358202 -1 0.036678314208984375 5 Unmodified _LPEYNPRTL_ ENSG00000179051|ENST00000375436|RCC2 27.223235318498237 0.1251536255799991 1 {I|L}PEYN 5 4 64.993 0 0 5.8999 0 0 0 482.27278600869755 482.27278600869755 51.18054082491639 0 0 0 0 1.305462187404089 1.3979400086720375 0 0 + {I|L}PEYN 5.8999 + + 134 + NaN NaN 120337.3 NaN 7275 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9803 48.317 NaN 127350 35 0 23719 0.262 -1 AYHCYVAICF 10 30 435.19117362518614 1302.5516914757584 3 435.52581787109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _AYHC(Carbamidomethyl (C))YVAIC(Carbamidomethyl (C))F_ nc|ENSG00000142163|Q8WZA6|OR1E3 7.101721422024254 0.4377131641736035 1 AY 2 -1 41.766 0 0 3.2065 0 0 0 1065.4285199040141 1065.4285199040141 29.00178719335269 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 AY 3.2065 + + 6 + NaN NaN 106664.6 NaN 7276 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9804 48.321 NaN 115500 35 0 21312 0.261 -1 FFCEIQPVL 9 45 576.7899260284672 NaN 0 576.789306640625 PEAK HCD FTMS 0 0 0 9797 16909.630859375 0.4301352329956665 -2 0.05661773681640625 7 Carbamidomethyl (C) _FFC(Carbamidomethyl (C))EIQPVL_ ENSG00000206474|ENST00000444197|OR10C1 13.90604991867851 0.22786006501039813 1 VP 2 -1 15.217 0 0 1.3214 0 0 131.09669872177932 821.3282147840507 952.4249135058301 0 0 0 0 0 0.4247425010840047 0 0 0 VP 1.3214 - 8 + NaN NaN 119987.4 NaN 7277 2525 9797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9806 48.326 NaN 595060 35 0 107900 0.327 + 15420 LPDKSIASL 9 72 472.27653176128445 942.5385105893689 2 472.27655029296875 MULTI HCD FTMS 0 0 0 9805 330486.90625 0.17297441486665394 10 -0.29283905029296875 1 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 74.19965305603844 0.007729275404663812 1 [{I|L}P]DKS{I|L}A 7 2 44.708 0 0 4.7433 0 0 0 215.1042370883056 215.1042370883056 16.047663267553176 0 0 0 0 1.6861818737241734 1.2218487496163564 0.6989700043360187 0 + [{I|L}P]DKS{I|L}A 4.7433 + + 228 NaN NaN 186563.1 NaN 7278 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9807 48.33 NaN 361450 35 0 65455 0.261 -1 EPNPDDPLM 9 65 522.2210890446795 1042.427625156159 2 522.2211303710938 MULTI HCD FTMS 0 0 0 9805 147222.078125 0.4991404298952401 9 -0.2697601318359375 2 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 39.94969957227396 0.06557568441294001 1 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 30.662 0 0 2.9414 0 0 552.215135642775 0 552.215135642775 0 8.406206186877938 0 0 0 1.3494850021680094 0 0.8494850021680094 0 D[{I|L}P]{M(Oxidation (M))|F} 2.9414 + + 70 NaN NaN 149387.6 NaN 7279 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9808 48.334 NaN 566600 35 0 141950 0.261 + 31900 VYNNIMRHYL 10 49 441.5605153818408 1321.6597167457223 3 441.5606994628906 MULTI HCD FTMS 0 0 0 9805 150452.4375 0.37262287846045716 -2 0.0633697509765625 3 Unmodified _VYNNIMRHYL_ ENSG00000115267|ENST00000649979|IFIH1 37.07464296494664 0.1707926854601146 1 VYN 3 7 56.555 0 0 4.2791 0 0 0 942.4643322870486 942.4643322870486 26.773174902439578 0 0 0 0 0.4247425010840047 2 0 0.7614393726401688 + VYN 4.2791 + + 49 + NaN NaN 181738.4 NaN 7280 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9809 48.337 NaN 669220 35 0 116810 0.261 + 24887 RYQQWMERF 9 65 448.54837673607517 1342.6233008084255 3 448.5486145019531 MULTI HCD FTMS 0 0 0 9805 49365.3828125 0.3623644366819119 4 -0.1136474609375 4 Unmodified _RYQQWMERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 15.738622578938676 0.22437813149664254 1 WMRE{M(Oxidation (M))|F} 5 6 35.75 0 0 2.6627 0 0 575.281150373625 0 575.281150373625 0 24.781381439366186 0 0 0 0.9247425010840047 0 0.6861818737241735 0 WMRE{M(Oxidation (M))|F} 2.6627 - 125 + NaN NaN 198494.1 NaN 7281 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9810 48.341 NaN 113760 35 0 11130 0.261 + 29022 TYERGTYYF 9 35 600.2722348547271 1198.5299167762541 2 600.2724609375 MULTI HCD FTMS 0 0 0 9805 57542.9453125 0.889649532536721 1 -0.030071258544921875 5 Unmodified _TYERGTYYF_ ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2 21.536976647645854 0.1742816388551942 1 YY{M(Oxidation (M))|F} 3 6 31.198 0 0 2.603 0 0 707.322892533598 0 707.322892533598 0 21.46591250700361 0 0 0 0.5 0 0 0 + YY{M(Oxidation (M))|F} 2.603 + + 14 NaN NaN 105620.3 NaN 7282 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9811 48.344 NaN 143220 35 0 21610 0.262 + 25999 SPDSGVYEM 9 46 492.7033260181451 983.3920991030902 2 492.7027282714844 MULTI HCD FTMS 0 0 0 9805 78601.5546875 1 0 0 6 Unmodified _SPDSGVYEM_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 26.88365393820708 0.12808753336095696 1 YEM 3 6 43.94 0 0 4.4682 0 0 542.23384400441 0 542.23384400441 0 18.723637474483468 0 0 0 1.4247425010840047 0 0.3494850021680094 0 + YEM 4.4682 + + 28 NaN NaN 103149.3 NaN 7283 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9812 48.347 NaN 76016 35 0 6764.2 0.261 + 28370 TPDWAERQL 9 38 558.2776664057708 1114.5407798783415 2 558.27734375 MULTI HCD FTMS 0 0 0 9805 39790.796875 0.14510266655909082 8 -0.233428955078125 7 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 20.580933911654288 0.18254163597178805 1 TPDWAE 6 3 45.42 0 0 4.0752 0 0 0 412.23127161197505 412.23127161197505 39.47743773147742 0 0 0 0 0.8252574989159953 0 0 0 + TPDWAE 4.0752 + + 26 + NaN NaN 98180.4 NaN 7284 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9813 48.351 NaN 146550 35 0 25972 0.262 -1 CLLIILPCFIL 11 51 458.9344834295646 1373.7816208888937 3 458.9344482421875 MULTI HCD FTMS 0 0 0 9805 34146.2265625 0.3090006162737995 22 -0.6344146728515625 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLIILPC(Carbamidomethyl (C))FIL_ ENSG00000131015|ENST00000367351|ULBP2;ENSG00000155918|ENST00000367341|RAET1L 1.4551175022131473 0.41253901545122046 1 {I|L}{I|L} 2 -1 20.969 0 0 1.5264 0 0 1129.6021434656304 0 1129.6021434656304 0 4.515449934959719 0 0 0 0 0 0 0 {I|L}{I|L} 1.5264 + + 17 NaN NaN 123808.6 NaN 7285 2526 9805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9815 48.356 NaN 1139900 35 0 383460 0.327 + 14753 LHVAQFQEFL 10 83 411.22241230577293 NaN 0 411.2223815917969 PEAK HCD FTMS 0 0 0 9814 431661.28125 0.8992322210034841 4 -0.11370468139648438 1 Unmodified _LHVAQFQEFL_ ENSG00000158169|ENST00000289081|FANCC 12.174745833636585 0.32976439397284646 1 {I|L} 1 9 4.6041 0 0 0.56118 0 0 175.08018730510213 529.2420137994749 704.3222011045771 0 0 0 0 0 0 0 0 0 + {I|L} 0.56118 + + 6 + NaN NaN 269306.2 NaN 7286 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9816 48.36 NaN 813250 35 0 59896 0.261 -1 LMIGCLVYP 9 107 533.2764337301227 1064.5383145270453 2 533.2899780273438 MULTI HCD FTMS 0 0 0 9814 103974.9765625 0.09547506978703477 10 -0.2891845703125 2 Carbamidomethyl (C) _LMIGC(Carbamidomethyl (C))LVYP_ ENSG00000197753|ENST00000360215|LHFPL5 28.173230860318316 0.11963627304438548 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV 8 -1 38.911 0 0 3.6552 0 0 0 128.04110233998838 128.04110233998838 15.008491328472005 0 0 0 0 0 1.5228787452803376 0.2742275032520141 0.841129063296272 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV 3.6552 - 2061 NaN NaN 218211.6 NaN 7287 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9817 48.364 NaN 1226300 35 0 215200 0.261 + 24326 RYIANTVEL 9 83 539.7973659217745 1077.5801789103489 2 539.798583984375 MULTI HCD FTMS 0 0 0 9814 541379.875 0.6557489710769009 -2 0.0567626953125 3 Unmodified _RYIANTVEL_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 87.25819977447905 0.004597812622239197 1 [YR]{I|L}ANTVE{I|L} 9 0 + 75.473 0 0 7.0039 7.0039 86.512 0 0 0 3.468548725623137 16.478174818886373 3.468548725623137 3.468548725623137 0 2.385151878060192 0 0.8494850021680094 0.805462187404089 + + [YR]{I|L}ANTVE{I|L};[Y{I|L}]RANTVE{I|L};[VP][HV]ANTVE{I|L};[YR]{I|L}AGGTVE{I|L};[Y{I|L}]RAGGTVE{I|L};[YR]{I|L}ANTD{I|L}{I|L};[VP][HV]AGGTVE{I|L};[Y{I|L}]RANTD{I|L}{I|L};[VP][HV]ANTD{I|L}{I|L};[YR]{I|L}AGGTD{I|L}{I|L} 7.0039;6.682;6.5146;6.1494;5.8275;4.9343;4.9166;4.6124;4.4449;4.0798 +;-;-;-;-;-;-;-;-;- + 507 NaN NaN 267441 NaN 7288 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9818 48.368 NaN 814820 35 0 211930 0.261 -1 ESEHSMDTLL 10 80 589.2554832117141 1176.4964134902282 2 589.2556762695312 MULTI HCD FTMS 0 0 0 9814 308011.96875 0.6023094271328631 -6 0.17655563354492188 4 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 14.838274106304384 0.3723198072575719 1 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 52.691 0 0 4.4786 0 0 543.1577625959 0 543.1577625959 0 31.519862825870675 0 0 0 1.25 0 0.6747425010840047 0 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 4.4786 - 218 NaN NaN 213354.9 NaN 7289 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9819 48.371 NaN 592360 35 0 139850 0.263 + 24926 RYSRSLTIAEF 11 62 448.24169559986876 1341.7032573998063 3 448.2417907714844 MULTI HCD FTMS 0 0 0 9814 127396.515625 0.9088846528997018 -1 0.030071258544921875 5 Unmodified _RYSRSLTIAEF_ ENSG00000105254|ENST00000221855|TBCB;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENST00000481742.1_1_19:36606435-36607215:+|nuORF 7.846045518447754 0.3845105762037768 1 AE{M(Oxidation (M))|F} 3 8 35.005 0 0 2.609 0 0 976.5463881152389 0 976.5463881152389 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0 + AE{M(Oxidation (M))|F} 2.609 + + 65 NaN NaN 181748.4 NaN 7290 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9820 48.374 NaN 151920 35 0 12683 0.261 + 24200 RYFKGPELL 9 56 561.8212326354909 1121.6279123377817 2 561.819091796875 MULTI HCD FTMS 0 0 0 9814 96965.7265625 0.11011215430518945 16 -0.4629783630371094 6 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 34.40172386719151 0.0910440009062557 1 [YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L} 9 2 + 63.408 0 0 5.6532 5.6532 62.709 0 0 0 4.762036441594191 51.72553429749129 4.762036441594191 0 0 0.3807196863200844 0 0.3494850021680094 0.3252574989159953 [YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L};[YR]{M(Oxidation (M))|F}K{I|L}GPE{I|L};{[QN]|[E{I|L}]|[KN]}PGVV{I|L}GPE{I|L};{[QN]|[E{I|L}]|[KN]}PGVVG{I|L}PE{I|L};[EP]{I|L}GVVG{I|L}PE{I|L};[EP]{I|L}GVV{I|L}GPE{I|L};[EP]G{I|L}VV{I|L}GPE{I|L};[EP]G{I|L}VVG{I|L}PE{I|L};[YR]{M(Oxidation (M))|F}KG[EP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}PGVVG[EP]{I|L}{I|L} 5.6532;5.6532;5.0387;5.0387;4.5918;4.5918;4.5918;4.5918;4.2931;3.6786 -;-;-;-;-;-;-;-;+;- + 360 NaN NaN 107664.7 NaN 7291 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9821 48.378 NaN 130960 35 0 9693.3 0.263 + 24158 RYFDGNLEKL 10 58 418.8871581210275 1253.6396449632825 3 418.8872375488281 MULTI HCD FTMS 0 0 0 9814 40386.55859375 0.5035052657148907 1 -0.03353118896484375 7 Unmodified _RYFDGNLEKL_ ENSG00000166233|ENST00000379887|ARIH1 23.015651743759182 0.29583137589827896 1 {I|L}EK{I|L} 4 6 35.45 0 0 2.8278 0 0 752.3229468205076 0 752.3229468205076 0 20.84630327004689 0 0 0 1.305462187404089 0 0 0 + {I|L}EK{I|L} 2.8278 + + 30 + NaN NaN 119535 NaN 7292 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9822 48.381 NaN 298920 35 0 30526 0.261 -1 0 75 616.3219043160758 1230.6292556989515 2 616.3211059570312 MULTI HCD FTMS 0 0 0 9814 156440.796875 0.3543932976196047 -3 0.09344100952148438 8 NaN NaN 1 {M(Oxidation (M))|F}EKQ{M(Oxidation (M))|F}E{I|L} 7 -1 61.05 0 0 4.9609 0 0 291.1578541486344 0 291.1578541486344 0 40.08101367314062 0 0 0 1.3494850021680094 0 0.5 0.6505149978319906 {M(Oxidation (M))|F}EKQ{M(Oxidation (M))|F}E{I|L} 4.9609 - 858 NaN NaN 131448.2 NaN 7293 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9823 48.384 NaN 63553 35 0 11775 0.261 + -1 MLGYTRQELK 10 28 627.8275106265719 1253.6404683199437 2 627.827880859375 MULTI HCD FTMS 0 0 0 9814 37573.62109375 0.7864015527160676 1 -0.03353118896484375 9 Oxidation (M) _M(Oxidation (M))LGYTRQELK_ REV__ENSG00000142798|ENST00000374695|HSPG2 7.101721422024254 0.4377131641736035 1 {I|L}E[K{I|L}] 4 -1 21.198 0 0 1.6909 0 0 752.3232289044937 0 752.3232289044937 0 21.197887582883936 0 0 0 0.5 0 0 0 {I|L}E[K{I|L}] 1.6909 - 4 NaN NaN 100793 NaN 7294 2527 9814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9825 48.389 NaN 667980 35 0 36433 0.326 + 22620 QVGPEEKIAL 10 84 542.3058411522327 1082.5971293712653 2 542.305908203125 MULTI HCD FTMS 0 0 0 9824 340089.71875 0.9479466342312874 -1 0.03353118896484375 1 Unmodified _QVGPEEKIAL_ ENSG00000097046|ENST00000234626|CDC7 147.24064527209634 2.7126949688607576E-07 1 {[QV]|[N{I|L}]|[RA]|[KV]}GPEEK{I|L}A{I|L} 10 0 + 85.076 0 0 7.8585 7.8585 95.549 0 0 0 28.793709283484077 61.88600764202883 28.793709283484077 38.23965628219186 0 2.992992819099939 1.3979400086720375 1.555462187404089 2.1791746928241125 + + {[QV]|[N{I|L}]|[RA]|[KV]}GPEEK{I|L}A{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T][DP]N{I|L}A{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}GPE[KA]{I|L}E{I|L};[KA]{I|L}E[DP]N{I|L}A{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}GPQ{[TV]|[{I|L}S]}{I|L}E{I|L};[KA]{I|L}E[DP]GG{I|L}A{I|L};[KA]{I|L}E[DP]A[VG]A{I|L} 7.8585;4.3263;3.8087;3.4999;3.0624;2.6533;1.8622 +;-;-;-;-;-;- + 1200 NaN NaN 180494.1 NaN 7295 2528 9824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9826 48.394 NaN 264800 35 0 20610 0.261 + 18199 MPDLPEKL 8 61 479.7494054996792 957.4842580661584 2 479.7491455078125 MULTI HCD FTMS 0 0 0 9824 132734.171875 0.4322153955206848 12 -0.3448982238769531 2 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 49.55428908609986 0.13052543569786648 1 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 49.672 0 0 5.1878 5.1878 91.372 0 0 0 28.702972028968716 11.237125054200234 11.237125054200234 49.67207215904928 0 1.6307196863200843 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 5.1878 + + 131 + NaN NaN 123852.3 NaN 7296 2528 9824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9827 48.398 NaN 313120 35 0 27967 0.261 + 3923 EPTDVVDKL 9 62 508.26880724455447 1014.523061555909 2 508.268798828125 MULTI HCD FTMS 0 0 0 9824 149492.03125 0.8754665690376684 1 -0.023380279541015625 3 Unmodified _EPTDVVDKL_ ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF 14.405379775768559 0.2358970535022398 1 [EP]TDVVD[K{I|L}] 9 0 + 27.303 0 0 2.6912 2.6912 80.943 0 0 0 -5.805824815521685 0.7999831128413639 -5.805824815521685 4.436974992327126 0 0 0 0.2742275032520141 0 + + [EP]TDVVD[K{I|L}];[EP]TDVV[VG]{[TV]|[{I|L}S]} 2.6912;2.2538 +;- + 164 + NaN NaN 128247.8 NaN 7297 2528 9824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9828 48.401 NaN 524570 35 0 44278 0.261 + 4214 EVAQFLTGR 9 63 510.77712784985664 1019.5397027665133 2 510.7772216796875 MULTI HCD FTMS 0 0 0 9824 160416.296875 1 0 0 4 Unmodified _EVAQFLTGR_ ENSG00000100418|ENST00000263256|DESI1;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENST00000482612.1_1_22:41999261-42000085:-|nuORF 81.9152076656658 0.005232646987511684 1 {NN|[MP]|[D{I|L}]|[EV]}AQ{M(Oxidation (M))|F}{I|L}TGR 9 0 + 83.043 0 0 8.1451 8.1451 91.656 0 0 0 54.00035782629692 12.98332479720628 12.98332479720628 9.208187539523749 0 1.7302046884880937 1.5228787452803376 0 0.28872548999643577 + + {NN|[MP]|[D{I|L}]|[EV]}AQ{M(Oxidation (M))|F}{I|L}TGR;{NN|[MP]|[D{I|L}]|[EV]}A[AG]{M(Oxidation (M))|F}{I|L}TGR;[QA]VE{M(Oxidation (M))|F}{I|L}TGR;{NN|[MP]|[D{I|L}]|[EV]}A[KT]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GR;[VP]G{[CA]|SS}{M(Oxidation (M))|F}{I|L}TGR;{[TV]|[{I|L}S]}[YN]P{I|L}TGR 8.1451;7.2419;5.147;3.4623;3.3593;2.2664 +;-;-;-;-;- + 310 + NaN NaN 178122.4 NaN 7298 2528 9824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9829 48.404 NaN 318310 35 0 93908 0.261 -1 KYMPNVKVAVF 11 54 437.9090113501808 1310.7052046507424 3 437.9091491699219 MULTI HCD FTMS 0 0 0 9824 87401.3984375 0.611233119266025 6 -0.16982650756835938 5 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 6.623454094837244 0.3898724468670146 1 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.3054 0 0 1046.5582413198133 0 1046.5582413198133 0 13.226825097560422 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3054 + + 17 NaN NaN 137941.8 NaN 7299 2528 9824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9830 48.408 NaN 346270 35 0 35041 0.261 + 34345 YPEGFEIHSM 10 65 613.2634398604836 1224.512326787767 2 613.2628784179688 MULTI HCD FTMS 0 0 0 9824 127614.6875 0.3773689694287028 -10 0.303131103515625 6 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 129.77232118876745 2.012219822695742E-05 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 120.63 0 0 9.8511 9.8511 96.712 0 0 0 94.29728367018946 14.814309196763702 14.814309196763702 19.885606273598313 0 2.666386562212267 1.5228787452803376 2.360924374808178 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}GEE{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};[EP]GY{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};[EP]YG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]} 9.8511;8.2271;6.763;6.6666;5.9699;5.837;5.761;5.7152;5.6875;5.6792 +;-;+;-;-;-;-;-;-;- + 2005 + NaN NaN 133495.6 NaN 7300 2528 9824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9832 48.413 NaN 4382000 35 0 211550 0.327 + 34238 YPDRIMNTF 9 133 586.7737018509798 1171.5328507687595 2 586.7744140625 MULTI HCD FTMS 0 0 0 9831 3120540.5 0.7793487134388456 6 -0.18277740478515625 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 205.91287158822604 1.025073046229338E-17 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 109.72 0 0 9.3655 9.3655 95.74 0 0 0 61.146680093746674 14.09256854528806 14.09256854528806 15.798414468456826 0 3.055462187404089 1.3979400086720375 1.6789171362030486 1.5189301784845295 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F} 9.3655;8.017;8.0081;7.3028;7.231;6.9056;6.7564;6.5297;6.5168;6.5061 +;+;-;-;-;-;-;-;-;- + 14285 + NaN NaN 686390.6 NaN 7301 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9833 48.417 NaN 2472700 35 0 935290 0.264 + 7876 FYTKRFQEL 9 91 411.22241230577293 NaN 0 411.2170715332031 PEAK HCD FTMS 0 0 0 9831 186715.890625 0.38896457087176467 6 -0.18277740478515625 2 Unmodified _FYTKRFQEL_ ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF 17.44264345198275 0.2045637549147401 1 KE{M(Oxidation (M))|F} 3 7 9.6927 0 0 1.1814 0 0 125.0655999027584 288.13508020572505 413.2006801084834 0 0 0 0 0 0 0 0 0 KE{M(Oxidation (M))|F} 1.1814 - 12 + NaN NaN 455549.2 NaN 7302 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9834 48.421 NaN 255020 35 0 42014 0.261 + 9869 IADPNIAKL 9 52 477.7846035952159 953.5546542572318 2 477.7844543457031 MULTI HCD FTMS 0 0 0 9831 127897.15625 0.8162868076937461 1 -0.02666473388671875 3 Unmodified _IADPNIAKL_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 33.4449034751529 0.0954363425218424 1 {I|L}AD 3 6 57.435 0 0 6.0233 0 0 0 651.3833908700777 651.3833908700777 35.395906230238126 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 + {I|L}AD 6.0233 + + 39 + NaN NaN 131638.1 NaN 7303 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9835 48.424 NaN 286020 35 0 15490 0.261 + -1 NDALLFCSVA 10 71 555.268257465777 1108.5219619983538 2 555.2568969726562 MULTI HCD FTMS 0 0 0 9831 43761.78125 0.43934212737915207 5 -0.14644622802734375 4 Carbamidomethyl (C) _NDALLFC(Carbamidomethyl (C))SVA_ REV__tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1 12.240655878213236 0.39661705172222156 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 35.49 0 0 3.2015 0 0 695.3601710821414 0 695.3601710821414 0 11.158109620864064 0 0 0 0.8807196863200843 0 0.5 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.2015 - 622 + NaN NaN 121902.9 NaN 7304 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9836 48.428 NaN 238260 35 0 48568 0.261 + 19385 NPEHYVQVL 9 42 549.7828359613621 1097.5511189895242 2 549.7828369140625 MULTI HCD FTMS 0 0 0 9831 124640.15625 1 0 0 5 Unmodified _NPEHYVQVL_ ENSG00000107938|ENST00000356792|EDRF1;ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1 18.1463463914782 0.20357593197100715 1 QV{I|L} 3 6 43.94 0 0 4.0035 0 0 739.3289773520016 0 739.3289773520016 0 35.713337517843655 0 0 0 0.9247425010840047 0 0 0.8494850021680094 + QV{I|L} 4.0035 + + 11 NaN NaN 135423.3 NaN 7305 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9837 48.431 NaN 171680 35 0 22743 0.261 -1 RYCMQLAQI 9 53 571.2778095501426 1140.541066167085 2 571.2786254882812 MULTI HCD FTMS 0 0 0 9831 41681.8125 0.5312499968883382 1 -0.02666473388671875 6 Oxidation (M) _RYCM(Oxidation (M))QLAQI_ CON__P02533;ENSG00000186847|ENST00000167586|KRT14 25.399314129420986 0.14091189997036632 1 {I|L}AQ{I|L} 4 -1 43.488 0 0 3.8129 0 0 697.2596302716812 0 697.2596302716812 0 13.310384486277798 0 0 0 0.8807196863200843 0 0 0.4247425010840047 {I|L}AQ{I|L} 3.8129 + + 79 NaN NaN 110004.8 NaN 7306 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9838 48.434 NaN 435280 35 0 47739 0.262 + 18752 NAAFKDVAL 9 73 474.7611712386832 947.5077895441664 2 474.7610778808594 MULTI HCD FTMS 0 0 0 9831 144777.421875 0.15747517686428958 -4 0.11367416381835938 7 Unmodified _NAAFKDVAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 55.50274090549119 0.023872834264864425 1 {[QG]|[NA]}A{M(Oxidation (M))|F}K[DV]A{I|L} 9 0 + 79.205 0 0 8.3593 8.3593 95.14 0 0 0 20.413705284069223 16.478174818886373 16.478174818886373 20.413705284069223 0 1.8807196863200843 1.6989700043360187 0 1.055462187404089 + + {[QG]|[NA]}A{M(Oxidation (M))|F}K[DV]A{I|L};QQ{M(Oxidation (M))|F}K[DV]A{I|L};{[QG]|[NA]}A{[QV]|[N{I|L}]|[RA]|[KV]}[YV]A{I|L};QQ{[QV]|[N{I|L}]|[RA]|[KV]}[YV]A{I|L};{[QG]|[NA]}A[Q{I|L}][{M(Oxidation (M))|F}T]A{I|L} 8.3593;6.2048;5.8526;3.6982;3.6018 +;-;-;-;- + 143 NaN NaN 155957.7 NaN 7307 2529 9831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9840 48.439 NaN 2788400 35 0 1085600 0.326 + 12833 KYFEKQFEL 9 90 411.2164753577131 1230.6275966733392 3 411.2159423828125 MULTI HCD FTMS 0 0 0 9839 1079372.25 0.8967015835987618 -1 0.02666473388671875 1 Unmodified _KYFEKQFEL_ ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1 39.212999716063884 0.06895754945631974 1 [YK]{M(Oxidation (M))|F}EK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L} 9 0 + 47.971 0 0 3.8981 3.8981 86.859 0 0 0 2.3764301679958777 21.876466762899497 2.3764301679958777 14.648867983026506 0 1.1382104921644451 0 0.4247425010840047 0 + + [YK]{M(Oxidation (M))|F}EK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L};[{M(Oxidation (M))|F}E][YK]K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L};[YK]{M(Oxidation (M))|F}EK[{M(Oxidation (M))|F}E]VAA;[{M(Oxidation (M))|F}E][YK]K[{M(Oxidation (M))|F}E]VAA 3.8981;2.7078;1.2081;0.017772 +;-;-;- + 221 NaN NaN 503758 NaN 7308 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9841 48.444 NaN 598360 35 0 70763 0.261 + 6982 FPVTDAVNKG 10 71 524.2770320826636 1046.539511232127 2 524.277099609375 MULTI HCD FTMS 0 0 0 9839 200249.9375 0.473004031976795 -3 0.08357620239257812 2 Unmodified _FPVTDAVNKG_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 32.78568957990786 0.20801173326193015 1 {I|L}MVESEA 7 9 79.461 0 0 7.5928 0 0 0 284.17194544010005 284.17194544010005 61.0450293571364 0 0 0 0 1.774227503252014 1.6989700043360187 0.805462187404089 0 {I|L}MVESEA 7.5928 - 393 + NaN NaN 188280.5 NaN 7309 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9842 48.448 NaN 249350 35 0 27283 0.261 -1 NWVNLIIMM 9 59 583.2929801829375 NaN 0 583.3062133789062 PEAK HCD FTMS 0 0 0 9839 6417.67431640625 0.7072326573958115 1 -0.03012847900390625 3 2 Oxidation (M) _NWVNLIIM(Oxidation (M))M(Oxidation (M))_ ENST00000521922.5_1_8:103372407-103373420:-|nuORF 11.640296217721598 0.23883959125015683 1 Y[{I|L}P][TP]K 6 -1 7.14 0 0 0.6131 0 0 165.0533262782614 297.09848962955317 462.1518159078146 0 0 0 0 0 0 0 1.1989700043360187 0 Y[{I|L}P][TP]K 0.6131 - 37 + NaN NaN 124630.6 NaN 7310 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9843 48.451 NaN 347830 35 0 25013 0.261 + 13098 KYLEMIYSM 9 70 605.2806176118941 1208.546682290588 2 605.771484375 MULTI HCD FTMS 0 0 0 9839 38044.16796875 0.8605641903304051 -13 0.3829383850097656 4 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 43.981846655682396 0.04706587046877104 1 {M(Oxidation (M))|F}{I|L}H{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 8 3 58.441 0 0 4.8357 0 0 136.07758776154293 0 136.07758776154293 0 32.4991318481208 0 0 0 2.0356668758921828 0 1.0484550065040281 0 {M(Oxidation (M))|F}{I|L}H{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.8357 - 249 + NaN NaN 153702.9 NaN 7311 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9844 48.454 NaN 230370 35 0 37398 0.263 + 14226 LAVSENHIL 9 56 498.27985084058804 994.5451487479761 2 498.2799377441406 MULTI HCD FTMS 0 0 0 9839 140463.0625 0.8307454426361369 -1 0.02666473388671875 5 Unmodified _LAVSENHIL_ CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1 49.55428908609986 0.03219431099695407 1 {I|L}AVS 4 5 66.657 0 0 6.7022 0 0 0 621.2985323541624 621.2985323541624 57.67728766960431 0 0 0 0 1.5 1.6989700043360187 0.75 0 + {I|L}AVS 6.7022 + + 41 + NaN NaN 117107.3 NaN 7312 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9845 48.458 NaN 145220 35 0 44788 0.261 + 8527 HAHLDIEAF 9 36 526.7617462445974 NaN 0 526.7616577148438 PEAK HCD FTMS 0 0 0 9839 48872.09765625 0.057688216400907634 23 -0.6655807495117188 6 Unmodified _HAHLDIEAF_ ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF 15.847184025352803 0.21527282152051216 1 AE{I|L} 3 7 26.198 0 0 2.4915 0 0 165.0794531810621 570.2428682916624 735.3223214727245 0 0 0 0 0 1 0 0 0 AE{I|L} 2.4915 - 11 + NaN NaN 103817.6 NaN 7313 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9846 48.461 NaN 59190 35 0 6857.4 0.261 + 12552 KSNMESFNTF 10 35 602.7686066404392 1203.5226603476783 2 602.7694702148438 MULTI HCD FTMS 0 0 0 9839 35585.140625 0.6590376229203226 7 -0.20560836791992188 7 Unmodified _KSNMESFNTF_ ENSG00000143498|ENST00000352967|TAF1A 7.608950283845883 0.4350283211712914 1 NT{M(Oxidation (M))|F} 3 7 32.435 0 0 2.695 0 0 823.3538685529312 0 823.3538685529312 0 28.455612550363796 0 0 0 0.5 0 0.4247425010840047 0 + NT{M(Oxidation (M))|F} 2.695 + + 12 NaN NaN 88625.2 NaN 7314 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9847 48.464 NaN 135080 35 0 27474 0.264 -1 TYMDRVFKQF 10 51 450.88818793242046 1349.6427343974615 3 450.8890075683594 MULTI HCD FTMS 0 0 0 9839 29583.33984375 0.5684520585978868 -4 0.1136474609375 8 Oxidation (M) _TYM(Oxidation (M))DRVFKQF_ ENSG00000158201|ENST00000289119|ABHD3 7.0370850670814 0.43805529467587806 1 TY{M(Oxidation (M))|F} 3 -1 50.005 0 0 3.7051 0 0 0 935.4735844166022 935.4735844166022 43.01538440272459 0 0 0 0 0.3807196863200844 2 0 0 TY{M(Oxidation (M))|F} 3.7051 + + 12 + NaN NaN 104297.8 NaN 7315 2530 9839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9849 48.469 NaN 407080 35 0 27537 0.327 + 22408 QPTIERVAL 9 77 513.8004936584722 1025.5864343837443 2 513.8008422851562 MULTI HCD FTMS 0 0 0 9848 187420.046875 1 0 0 1 Unmodified _QPTIERVAL_ ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF 16.149105407346934 0.22083165093524068 1 AEAGVYR{I|L} 8 8 31.566 0 0 3.0778 0 0 148.12052806936168 0 148.12052806936168 0 8.889888100039016 0 0 0 0.3494850021680094 0 0.6747425010840047 0 AEAGVYR{I|L} 3.0778 - 989 + NaN NaN 145684.1 NaN 7316 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9850 48.474 NaN 186690 35 0 29201 0.261 + 10641 IPTVAATALS 10 51 472.27653176128445 942.5385105893689 2 472.2765197753906 MULTI HCD FTMS 0 0 0 9848 91491.671875 0.04788606782435885 15 -0.43475341796875 2 Unmodified _IPTVAATALS_ HTR2C|p.R400T|1|0.36|ENSG00000147246|chrX:114907237-114907237|G/C|missense_variant 18.1463463914782 0.3413772152514074 1 {I|L}P 2 8 38.188 0 0 4.0516 0 0 0 729.3782101211659 729.3782101211659 18.723637474483468 0 0 0 0 0.3494850021680094 1.5228787452803376 0 0 + {I|L}P 4.0516 + + 26 + NaN NaN 116400.5 NaN 7317 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9851 48.478 NaN 179630 35 0 15924 0.261 + -1 MIRDSGLVTH 10 51 572.792017395378 NaN 0 572.8084716796875 PEAK HCD FTMS 0 0 0 9848 6665.88427734375 0.8086459651905763 -1 0.03012847900390625 3 Oxidation (M) _M(Oxidation (M))IRDSGLVTH_ REV__ENSG00000114770|ENST00000334444|ABCC5;REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF;REV__nc|ENSG00000114770|O15440-5|ABCC5 10.073929032068715 0.33156240198919784 1 SH{I|L} 3 -1 20.005 0 0 1.7494 0 0 131.06047499322352 672.3113497369749 803.3718247301983 0 0 0 0 0 0 0 0.3807196863200844 0 SH{I|L} 1.7494 - 35 + NaN NaN 127073.3 NaN 7318 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9852 48.481 NaN 249370 35 0 28695 0.261 + 35315 YWMHVQNTF 9 57 621.2743008855266 1240.534048837853 2 621.2740478515625 MULTI HCD FTMS 0 0 0 9848 114283.984375 0.44529252017177384 -3 0.08017349243164062 4 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 81.89019881105858 0.005240739447516426 1 NQA{M(Oxidation (M))|F}{M(Oxidation (M))|F}TT{M(Oxidation (M))|F} 8 7 58.67 0 0 4.7294 0 0 266.12620742011876 0 266.12620742011876 0 40.482456645327076 0 0 0 1 0 0 1.0356668758921828 NQA{M(Oxidation (M))|F}{M(Oxidation (M))|F}TT{M(Oxidation (M))|F} 4.7294 - 271 NaN NaN 133390.1 NaN 7319 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9853 48.485 NaN 162890 35 0 24736 0.264 + 28542 TPQIEREYDL 10 67 421.8800158362734 1262.6182181090203 3 421.8728942871094 MULTI HCD FTMS 0 0 0 9848 9070.6259765625 0.29680861241848033 -1 0.03012847900390625 5 Unmodified _TPQIEREYDL_ REV__ENSG00000164056|ENST00000651917|SPRY1 5.296884461304476 0.4472664531305844 1 {I|L} 1 -1 18.495 0 0 1.4648 0 0 1131.5235811234718 0 1131.5235811234718 0 0.010080697329541977 0 0 0 0.5 0 0 0 {I|L} 1.4648 + + 21 + NaN NaN 102991.9 NaN 7320 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9854 48.488 NaN 198110 35 0 29274 0.261 + -1 CQYRVMLFL 9 60 415.87639121009386 1244.6073442304817 3 415.87640380859375 MULTI HCD FTMS 0 0 0 9848 23972.224609375 0.5187860222310196 -1 0.03012847900390625 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))QYRVM(Oxidation (M))LFL_ REV__ENSG00000173040|ENST00000344408|EVC2;REV__nc|ENSG00000173040|Q86UK5-2|EVC2;REV__nc|ENSG00000173040|Q86UK5-3|EVC2 4.897010918128616 0.31389406404703984 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.0865 0 0 966.4444190771734 0 966.4444190771734 0 25.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.0865 + + 9 NaN NaN 104223.9 NaN 7321 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9855 48.491 NaN 161740 35 0 23766 0.261 + -1 YCTMERSTF 9 49 404.16729626126295 NaN 0 404.16741943359375 PEAK HCD FTMS 0 0 0 9848 15019.3408203125 0.32354745546264424 5 -0.1490631103515625 7 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))TM(Oxidation (M))ERSTF_ REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1 4.5288652416199255 0.27330059333143564 1 {I|L} 1 -1 3.9794 0 0 0.49353 0 0 453.16084266725403 237.05156885318596 690.21241152044 0 0 0 0 0 0 0 0 0 {I|L} 0.49353 - 3 + NaN NaN 104666.6 NaN 7322 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9856 48.495 NaN 149620 35 0 11689 0.261 + 19050 NEDPKEEL 8 61 487.22723330057363 972.4399136679473 2 487.741943359375 MULTI HCD FTMS 0 0 0 9848 4796.54931640625 0.05543027035015892 -7 0.20714569091796875 8 Unmodified _NEDPKEEL_ REV__nc|ENSG00000275066|Q9UMZ2-7|SYNRG 20.453626601364224 0.4433031943603284 1 E{I|L} 2 -1 24.464 0 0 2.5157 0 0 712.3028469588301 0 712.3028469588301 0 9.06295947543775 0 0 0 0.3494850021680094 0 0 0 E{I|L} 2.5157 + + 87 NaN NaN 104906.9 NaN 7323 2531 9848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9858 48.5 NaN 756940 35 0 160790 0.326 + 18085 MMRTAKGDLHY 11 76 441.55107492619294 NaN 0 441.5606384277344 PEAK HCD FTMS 0 0 0 9857 11110.3427734375 0.7838336945686283 1 -0.033031463623046875 1 Unmodified _MMRTAKGDLHY_ ENSG00000215041|ENST00000399464|NEURL4;nc|ENSG00000215041|Q96JN8-2|NEURL4 5.523293073838413 0.3264521516431239 1 A{M(Oxidation (M))|F}[PA]V 5 9 12.218 0 0 1.3868 0 0 260.7602514331714 132.04543481998283 392.80568625315425 0 0 0 0 0 0 0 0 0 A{M(Oxidation (M))|F}[PA]V 1.3868 - 50 + NaN NaN 192324.9 NaN 7324 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9859 48.504 NaN 489770 35 0 40324 0.261 -1 IPDHQVPMI 9 84 533.2739697839737 1064.5333866347473 2 533.2899780273438 MULTI HCD FTMS 0 0 0 9857 76115.6875 0.4306883926859244 -7 0.20068359375 2 Oxidation (M) _IPDHQVPM(Oxidation (M))I_ ENST00000487162.1_1_22:50966877-50967150:-|nuORF 22.736283301280096 0.1639198954644489 1 MVYGQ{M(Oxidation (M))|F} 6 -1 39.391 0 0 3.7003 0 0 0 336.1670015924438 336.1670015924438 9.587972279628328 0 0 0 0 1 0 0 0.3807196863200844 MVYGQ{M(Oxidation (M))|F} 3.7003 - 512 + NaN NaN 165171.2 NaN 7325 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9860 48.508 NaN 345850 35 0 54555 0.261 + 21423 PVSREWTL 8 64 494.26664867831363 986.5187444234273 2 494.2668151855469 MULTI HCD FTMS 0 0 0 9857 219618 0.7019783274763355 -2 0.060344696044921875 3 Unmodified _PVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 60.07390631473393 0.06540289509817182 1 PVWWW 5 5 42.72 0 0 4.3304 0 0 0 229.11931787662346 229.11931787662346 17.503859178250778 0 0 0 0 1.305462187404089 2 0 0 PVWWW 4.3304 - 209 + NaN NaN 128029.4 NaN 7326 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9861 48.511 NaN 157350 35 0 13729 0.261 + -1 MLSAWSMSSI 10 53 572.7534495236388 1143.4923461140775 2 572.7540283203125 MULTI HCD FTMS 0 0 0 9857 40396.75 0.7963190688576033 3 -0.09576797485351562 4 2 Oxidation (M) _M(Oxidation (M))LSAWSM(Oxidation (M))SSI_ REV__ENST00000341853.5_1_15:100332473-100332959:-|nuORF 9.38312468134398 0.42334543440173333 1 E{I|L} 2 -1 16.454 0 0 1.4389 0 0 883.3591175763687 0 883.3591175763687 0 1.7609125905568117 0 0 0 0 0 0 0 E{I|L} 1.4389 - 119 NaN NaN 109036.7 NaN 7327 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9862 48.514 NaN 111200 35 0 12058 0.261 + 29023 TYERGTYYF 9 43 600.2722348547271 1198.5299167762541 2 600.2721557617188 MULTI HCD FTMS 0 0 0 9857 19699.580078125 0.30456769483202856 7 -0.19807052612304688 5 Unmodified _TYERGTYYF_ ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2 13.042465956692817 0.2476723265019929 1 DVQ{M(Oxidation (M))|F} 4 8 29.725 0 0 2.4801 0 0 691.2950916974625 0 691.2950916974625 0 5.032059605518313 0 0 0 0 0 0.3807196863200844 0 DVQ{M(Oxidation (M))|F} 2.4801 - 25 NaN NaN 112517.2 NaN 7328 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9863 48.518 NaN 107830 35 0 14241 0.261 -1 MPPLQLRLP 9 40 561.8212326354909 1121.6279123377817 2 562.8271484375 MULTI HCD FTMS 0 0 0 9857 37966.046875 0.05346965765979874 18 -0.5229454040527344 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))PPLQLRLP_ ENST00000359197.9_1_7:50450337-50459433:+|nuORF 2.0597508629832335 0.3354026079994024 1 Q 1 -1 6.5495 0 0 0.58393 0 0 126.08306478094421 864.4648531549436 990.5479179358879 0 0 0 0 0 0 0 0 0.3054621874040891 Q 0.58393 + + 5 + NaN NaN 104284.9 NaN 7329 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9864 48.521 NaN 121470 35 0 22180 0.263 + 20973 PLIIVCLF 8 42 459.2799015286604 NaN 0 459.268798828125 PEAK HCD FTMS 0 0 0 9857 11115.1259765625 0.45936297172238577 -13 0.3936576843261719 7 Unmodified _PLIIVCLF_ ENSG00000070214|ENST00000374720|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;nc|ENSG00000070214|Q8WWI5-3|SLC44A1 0.7936320650641473 0.38822285293237185 1 TT 2 8 9.464 0 0 1.0326 0 0 118.2078000282208 593.2190645807249 711.4268646089457 0 0 0 0 0 0 0 0 0 TT 1.0326 - 8 + NaN NaN 96727.1 NaN 7330 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9865 48.524 NaN 214160 35 0 22495 0.261 + 15240 LPAAGVGDMVM 11 62 546.7568773865822 1091.4992018399644 2 546.7561645507812 MULTI HCD FTMS 0 0 0 9857 55490.66796875 0.06411207053484885 -38 1.1164665222167969 8 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 47.748688679222035 0.09066307675719942 1 ARG{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F} 7 5 37.624 0 0 3.447 0 0 281.1738977401581 0 281.1738977401581 0 11.426222739823757 0 0 0 1.8494850021680094 0 0.3054621874040891 0 ARG{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F} 3.447 - 207 + NaN NaN 115323.8 NaN 7331 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9866 48.528 NaN 77568 35 0 7607.7 0.261 + 19531 NSGREDSENTF 11 36 628.2638892450652 1254.5132255569304 2 628.2636108398438 MULTI HCD FTMS 0 0 0 9857 32324.03515625 0.8225866785133076 -2 0.060344696044921875 9 Unmodified _NSGREDSENTF_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 12.872603262515298 0.344922997490724 1 QNT{M(Oxidation (M))|F} 4 8 45.433 0 0 3.6216 0 0 746.2850208966812 0 746.2850208966812 0 45.43305028184122 0 0 0 0.9247425010840047 0 0.4247425010840047 0 QNT{M(Oxidation (M))|F} 3.6216 - 40 NaN NaN 98575.8 NaN 7332 2532 9857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9868 48.533 NaN 1019000 35 0 314400 0.327 -1 ESEHSMDTLL 10 83 589.2554832117141 1176.4964134902282 2 589.2561645507812 MULTI HCD FTMS 0 0 0 9867 511384.9375 1 0 0 1 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 10.823927491677226 0.4098686510432541 1 H{I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 6 -1 60.31 0 0 5.1263 0 0 406.09736830879064 0 406.09736830879064 0 34.368128451160516 0 0 0 1.805462187404089 0 0.7614393726401688 0 H{I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5.1263 - 593 NaN NaN 233109.6 NaN 7333 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9869 48.537 NaN 404080 35 0 38805 0.261 -1 0 92 616.3219043160758 1230.6292556989515 2 616.32177734375 MULTI HCD FTMS 0 0 0 9867 300745.6875 0.6812945092779216 3 -0.0858154296875 2 NaN NaN 1 P{M(Oxidation (M))|F}EKQ{M(Oxidation (M))|F}E{I|L} 8 -1 80.431 0 0 6.5358 0 0 194.10533339668126 0 194.10533339668126 0 43.030549546138914 0 0 0 1.6989700043360187 0 1.0114393726401687 1.024227503252014 P{M(Oxidation (M))|F}EKQ{M(Oxidation (M))|F}E{I|L} 6.5358 - 2481 NaN NaN 149189.6 NaN 7334 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9870 48.541 NaN 883420 35 0 95228 0.261 + 26946 SYLGARAVIE 10 82 539.7973659217745 1077.5801789103489 2 539.7984619140625 MULTI HCD FTMS 0 0 0 9867 254506.96875 0.30827278699584737 4 -0.11223220825195312 3 Unmodified _SYLGARAVIE_ tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1 39.94969957227396 0.1458432724694501 1 QVCTVE{I|L} 7 9 45.513 0 0 4.2236 0 0 287.19551284004064 0 287.19551284004064 0 9.025611324612882 0 0 0 0.7059771852360797 0 0.3807196863200844 0.2742275032520141 QVCTVE{I|L} 4.2236 - 859 NaN NaN 216983.4 NaN 7335 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9871 48.544 NaN 160490 35 0 11116 0.261 + 22621 QVGPEEKIAL 10 56 542.3058411522327 1082.5971293712653 2 542.3058471679688 MULTI HCD FTMS 0 0 0 9867 109589.3828125 0.3054631788529875 4 -0.11223220825195312 4 Unmodified _QVGPEEKIAL_ ENSG00000097046|ENST00000234626|CDC7 37.07464296494664 0.1707926854601146 1 RK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}C(Carbamidomethyl (C))A{I|L} 7 7 19.358 0 0 1.7881 0 0 177.10283760377507 0 177.10283760377507 0 4.409299340388255 0 0 0 0.6382104921644451 0 0 0 RK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}C(Carbamidomethyl (C))A{I|L} 1.7881 - 203 + NaN NaN 109480.6 NaN 7336 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9872 48.547 NaN 312300 35 0 40206 0.262 -1 KYMGIPQIRQL 11 72 454.922578513133 1361.745906139599 3 454.9234924316406 MULTI HCD FTMS 0 0 0 9867 68416.1640625 1 0 0 5 Oxidation (M) _KYM(Oxidation (M))GIPQIRQL_ ENSG00000141252|ENST00000437048|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53 14.837902256254086 0.32779928292324945 1 {I|L}QP[WE]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7 -1 22.223 0 0 1.632 0 0 415.25499159980626 0 415.25499159980626 0 7.6190258766229135 0 0 0 0.9247425010840047 0 0 0 {I|L}QP[WE]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.632 - 45 NaN NaN 129084.3 NaN 7337 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9873 48.551 NaN 143950 35 0 19331 0.261 + 35257 YVRGEEAETPL 11 51 421.8800158362734 1262.6182181090203 3 421.8794860839844 MULTI HCD FTMS 0 0 0 9867 16501.453125 0.5399598018455566 1 -0.02640533447265625 6 Unmodified _YVRGEEAETPL_ REV__ENST00000383693.7_1_3:100120104-100120320:+|nuORF 4.5288652416199255 0.3990586020344083 1 YY 2 -1 34.949 0 0 2.7679 0 0 0 933.4470200795333 933.4470200795333 15.344406447039063 0 0 0 0 0 2 0 0 YY 2.7679 - 13 + NaN NaN 109324.4 NaN 7338 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9874 48.554 NaN 80127 35 0 14024 0.261 + 1378 AYPHRLNLF 9 44 565.8088247578374 1129.6030965824748 2 565.8093872070312 MULTI HCD FTMS 0 0 0 9867 18667.064453125 0.20580552584674838 8 -0.22454452514648438 7 Unmodified _AYPHRLNLF_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2 4.3292370932331545 0.3181982124262546 1 P[{I|L}T]{M(Oxidation (M))|F} 4 6 13.812 0 0 1.2228 0 0 653.3593617169937 0 653.3593617169937 0 13.812281309285623 0 0 0 0 0 0 0 P[{I|L}T]{M(Oxidation (M))|F} 1.2228 - 2 NaN NaN 93409.5 NaN 7339 2533 9867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9876 48.559 NaN 2977100 35 0 162030 0.327 + 34239 YPDRIMNTF 9 116 586.7737018509798 1171.5328507687595 2 586.7742309570312 MULTI HCD FTMS 0 0 0 9875 1955310.375 0.4883348333821903 11 -0.3155326843261719 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 234.92804109512608 7.047189961547639E-32 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 121.32 0 0 10.356 10.356 96.439 0 0 0 71.90469704080093 14.973024840566467 14.973024840566467 15.757659435244733 0 3.0114393726401687 1.5228787452803376 2.2477861090009466 1.5400990676322905 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 10.356;9.0109;8.2106;7.5525;7.4607;7.4246;6.7127;6.6747;6.5674;5.9905 +;-;+;-;-;-;-;-;-;- + 18646 + NaN NaN 547365.6 NaN 7340 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9877 48.563 NaN 1106900 35 0 70983 0.261 -1 QNPTGRCKI 9 107 537.2794458654649 1072.5443387977298 2 537.2926025390625 MULTI HCD FTMS 0 0 0 9875 27660.623046875 0.3442366587332985 3 -0.08582687377929688 2 Carbamidomethyl (C) _QNPTGRC(Carbamidomethyl (C))KI_ ENSG00000182405|ENST00000397766|PGBD4 25.399314129420986 0.14091189997036632 1 YK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F} 8 -1 42.904 0 0 4.0002 0 0 128.06882218070376 0 128.06882218070376 0 5.023408275244549 0 0 0 0 0 0 1.6808845489566888 YK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F} 4.0002 - 1155 + NaN NaN 261121.8 NaN 7341 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9878 48.567 NaN 646270 35 0 84669 0.261 + 34346 YPEGFEIHSM 10 80 613.2634398604836 1224.512326787767 2 613.2633666992188 MULTI HCD FTMS 0 0 0 9875 317446.8125 0.9387209170696096 -4 0.119781494140625 3 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 160.51597146486608 9.059942175021003E-11 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 129.71 0 0 10.593 10.593 96.503 0 0 0 81.29732026509308 19.92870292316539 19.92870292316539 15.613781669535385 0 2.353917193908117 1.5228787452803376 2.979339555460717 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}GEE{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}G{M(Oxidation (M))|F}[HS]E{[QN]|[E{I|L}]|[KN]};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}EGEPY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}EGE{I|L}{M(Oxidation (M))|F} 10.593;9.3175;6.6797;5.4798;5.4046;5.0868;4.9427;4.9186;4.7554;4.6116 +;-;-;-;-;-;-;-;-;- + 3353 + NaN NaN 183578.5 NaN 7342 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9879 48.57 NaN 360040 35 0 23427 0.261 + 18188 MPDLENRVL 9 82 551.781073415985 1101.54759389877 2 551.7811279296875 MULTI HCD FTMS 0 0 0 9875 102529.3359375 0.6041134708679207 -7 0.20335769653320312 4 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 49.52724829834842 0.03223213920720493 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}ENRV{I|L} 9 0 + 52.889 0 0 4.8013 4.8013 90.839 0 0 0 5.6424927368725974 33.449302836445014 5.6424927368725974 52.889020658501934 0 1.9564608101803795 0 0.8252574989159953 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}ENRV{I|L} 4.8013 + + 299 NaN NaN 132774.7 NaN 7343 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9880 48.574 NaN 224200 35 0 59060 0.262 -1 KYMPNVKVAVF 11 50 437.9090113501808 1310.7052046507424 3 437.90936279296875 MULTI HCD FTMS 0 0 0 9875 50651.41796875 0.3542257304089403 12 -0.34510040283203125 5 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 4.715918219556657 0.3982382512160552 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.6777 0 0 1145.6261774064048 0 1145.6261774064048 0 5 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6777 + + 7 + NaN NaN 111461.8 NaN 7344 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9881 48.577 NaN 142990 35 0 18662 0.261 -1 MEATEMFFY 9 39 600.7345071515579 NaN 0 600.7476806640625 PEAK HCD FTMS 0 0 0 9875 7228.39990234375 0.7637748935062824 -1 0.02640533447265625 6 2 Oxidation (M) _M(Oxidation (M))EATEM(Oxidation (M))FFY_ ENST00000466556.5_1_9:131588609-131591411:-|nuORF 4.75600775471527 0.27219989241163056 1 QVD{I|L} 4 -1 24.24 0 0 2.0209 0 0 166.0062756626615 575.1886690729124 741.1949447355739 0 0 0 0 0 0 0 0.3807196863200844 0 QVD{I|L} 2.0209 - 39 + NaN NaN 107401.3 NaN 7345 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9882 48.58 NaN 206360 35 0 31087 0.261 + 11064 IYGEKTYAF 9 69 546.2740194706432 1090.5334860080864 2 546.2742309570312 MULTI HCD FTMS 0 0 0 9875 81714.7890625 1 0 0 7 Unmodified _IYGEKTYAF_ ENSG00000242550|ENST00000238508|SERPINB10 38.175570920033316 0.07371992880350783 1 {I|L}YW 3 7 48.302 0 0 4.4292 0 0 0 625.3016451471311 625.3016451471311 29.590606190045108 0 0 0 0 0.75 2 0 0 {I|L}YW 4.4292 - 179 + NaN NaN 118909.3 NaN 7346 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9883 48.584 NaN 109140 35 0 7143.2 0.261 + 14559 LFHSFLIVF 9 50 561.8212326354909 1121.6279123377817 2 561.8182373046875 MULTI HCD FTMS 0 0 0 9875 49815.42578125 0.05656930592757567 23 -0.6511001586914062 8 Unmodified _LFHSFLIVF_ SCN1A|p.F937L|1|0.27|ENSG00000144285|chr2:166037911-166037911|G/T|missense_variant 12.531546534597751 0.2520865569484384 1 KG[{I|L}P]E{I|L} 6 8 23.901 0 0 2.1309 0 0 466.23375136543126 0 466.23375136543126 0 6.9112251007275916 0 0 0 0 0 0 0 KG[{I|L}P]E{I|L} 2.1309 - 80 NaN NaN 97626.9 NaN 7347 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9884 48.587 NaN 185250 35 0 20703 0.261 + 22594 QTIQGILER 9 64 529.3041197355526 1056.5936865379051 2 529.304443359375 MULTI HCD FTMS 0 0 0 9875 52704.58984375 0.5018305967861567 -3 0.08965301513671875 9 Unmodified _QTIQGILER_ ENSG00000047410|ENST00000367478|TPR 32.037481411007896 0.10189719824197178 1 [QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}ER 9 0 + 46.859 0 0 4.4349 4.4349 85.336 0 0 0 5.585908507588755 9.994142581944772 5.585908507588755 9.208187539523749 0 0.6747425010840047 0 0 0.4247425010840047 + + [QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}ER;[QT]{I|L}[AG]{[VA]|[{I|L}G]}{I|L}ER;[QT]K[KT]Q{I|L}[NP];[QT]K[KT][AG]{I|L}[NP];[QT]{I|L}[HV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L};[QT]K[NP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L} 4.4349;3.5634;2.8027;1.9312;0.54192;0.36525 +;-;-;-;-;- + 272 + NaN NaN 113267.3 NaN 7348 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9885 48.59 NaN 75059 35 0 6212 0.261 -1 YDCRAPNNFT 10 35 629.2719536415489 1256.5293543498976 2 629.2728271484375 MULTI HCD FTMS 0 0 0 9875 18398.09765625 0.4247334905928361 -1 0.02640533447265625 10 Carbamidomethyl (C) _YDC(Carbamidomethyl (C))RAPNNFT_ ENSG00000242265|ENST00000612748|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10 7.608950283845883 0.4350283211712914 1 QN[{M(Oxidation (M))|F}T] 4 -1 33.188 0 0 2.6412 0 0 748.2993261289977 0 748.2993261289977 0 25.74031267727719 0 0 0 1.5 0 0.5 0 QN[{M(Oxidation (M))|F}T] 2.6412 - 69 + NaN NaN 102171.7 NaN 7349 2534 9875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9887 48.595 NaN 1090500 35 0 160340 0.327 + 18753 NAAFKDVAL 9 91 474.7611712386832 947.5077895441664 2 474.7610168457031 MULTI HCD FTMS 0 0 0 9886 771974.0625 0.8396803206772924 2 -0.049495697021484375 1 Unmodified _NAAFKDVAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 96.93554129104106 0.004344229100022454 1 {[QG]|[NA]}A{M(Oxidation (M))|F}KDVA{I|L} 9 0 + 99.179 0 0 10.467 10.467 97.101 0 0 0 19.744237387763093 16.478174818886373 16.478174818886373 19.744237387763093 0 2.1307196863200843 1.6989700043360187 0 1.4049471895720984 + + {[QG]|[NA]}A{M(Oxidation (M))|F}KDVA{I|L};QQ{M(Oxidation (M))|F}KDVA{I|L};{[QG]|[NA]}A{M(Oxidation (M))|F}KA[DV]{I|L};NAA{M(Oxidation (M))|F}KDVA{I|L};{[QG]|[NA]}A{M(Oxidation (M))|F}KD[{I|L}A]V;{[QG]|[NA]}A{M(Oxidation (M))|F}KA{NN|[MP]|[D{I|L}]|[EV]}V;NAA{M(Oxidation (M))|F}K[PS]T{I|L};QQ{M(Oxidation (M))|F}KA[DV]{I|L};QQ{M(Oxidation (M))|F}KD[{I|L}A]V;NAA[Q{I|L}][{M(Oxidation (M))|F}T]A{I|L} 10.467;8.3836;8.1446;7.779;7.0568;6.8226;6.5378;6.0608;4.973;4.9547 +;-;-;+;-;-;-;-;-;- + 518 NaN NaN 260575.4 NaN 7350 2535 9886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9888 48.6 NaN 1117900 35 0 446940 0.261 + 3443 EFQKISHMVI 10 75 411.22252245694636 NaN 0 411.2168273925781 PEAK HCD FTMS 0 0 0 9886 120642.0390625 0.858512399248841 1 -0.02307891845703125 2 Unmodified _EFQKISHMVI_ ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1 10.315234532428624 0.33135587792498 1 KE 2 9 7.9588 0 0 0.97008 0 0 125.06350086916775 435.20395837955317 560.2674592487209 0 0 0 0 0 0 0 0 0 KE 0.97008 - 12 + NaN NaN 266347 NaN 7351 2535 9886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9889 48.604 NaN 687480 35 0 81178 0.261 + 14330 LDPSFERAI 9 65 524.2770320826636 1046.539511232127 2 524.277099609375 MULTI HCD FTMS 0 0 0 9886 274028.90625 0.6472749962003916 2 -0.049495697021484375 3 Unmodified _LDPSFERAI_ REV__ENSG00000061273|ENST00000080059|HDAC7;REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF;REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-2|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-4|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-6|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-7|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-8|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-9|HDAC7;REV__nc|ENSG00000061273|Q8WUI4|HDAC7 26.268140514670165 0.13340543277302316 1 {I|L}MVESE{I|L} 7 -1 80.504 0 0 7.6924 0 0 0 242.1258486383422 242.1258486383422 60.04636425462553 0 0 0 0 1.6989700043360187 2 0.805462187404089 0 {I|L}MVESE{I|L} 7.6924 - 566 + NaN NaN 193322.8 NaN 7352 2535 9886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9890 48.607 NaN 861100 35 0 45116 0.261 + 34933 YSLLMPLEL 9 87 539.7973659217745 1077.5801789103489 2 540.2964477539062 MULTI HCD FTMS 0 0 0 9886 333094.34375 0.7668521190304313 6 -0.16180801391601562 4 Unmodified _YSLLMPLEL_ REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF;REV__nc|ENSG00000101974|Q8NB49-3|ATP11C 34.10243960390752 0.09241788333544565 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NSVQR 8 -1 52.789 0 0 4.8989 0 0 0 127.07284650205533 127.07284650205533 -3.265858469654944 0 -3.265858469654944 0 0 0 1 0.9802046884880937 1.3882104921644451 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NSVQR 4.8989 - 2096 NaN NaN 219261.3 NaN 7353 2535 9886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9891 48.61 NaN 474670 35 0 29336 0.261 + 1342 AYPHNLMTF 9 75 555.2577483138126 1108.5009436944251 2 555.2575073242188 MULTI HCD FTMS 0 0 0 9886 141341.9375 0.09826054660068896 -12 0.3530693054199219 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 66.45667989310934 0.010234776021261575 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 69.536 0 0 6.273 6.273 88.398 0 0 0 24.129712596891153 28.46114929231213 24.129712596891153 9.208187539523749 0 1.6237125054200234 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R{[SA]|[TG]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RC{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};[YT]VT[C(Carbamidomethyl (C))R]Y{M(Oxidation (M))|F};[YT]TV[C(Carbamidomethyl (C))R]Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]GG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 6.273;5.4423;4.4773;4.0021;3.3485;3.279;3.2584;3.1215;2.7625;2.5178 -;-;-;-;-;-;-;-;-;- 1090 NaN NaN 169678.2 NaN 7354 2535 9886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9892 48.613 NaN 174270 35 0 18000 0.261 + -1 LYPSTLDPIM 10 46 583.2921648291915 NaN 0 583.3056640625 PEAK HCD FTMS 0 0 0 9886 6720.0986328125 0.8152083801766894 -1 0.0363311767578125 6 Oxidation (M) _LYPSTLDPIM(Oxidation (M))_ REV__ENSG00000148737|ENST00000355995|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-10|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-11|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-12|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-13|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-15|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-16|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-2|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-3|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-4|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-5|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-6|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-7|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-8|TCF7L2;REV__nc|ENSG00000148737|Q9NQB0-9|TCF7L2 10.823927491677226 0.33092050725491123 1 DQY[TP]R 6 -1 10.596 0 0 0.90983 0 0 132.09936931640078 269.1040133111938 401.2033826275946 0 0 0 0 0 0 0 0.7742275032520141 0 DQY[TP]R 0.90983 - 149 + NaN NaN 118246.3 NaN 7355 2535 9886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9894 48.618 NaN 429790 35 0 43655 0.327 + 35316 YWMHVQNTF 9 66 621.2743008855266 1240.534048837853 2 621.2741088867188 MULTI HCD FTMS 0 0 0 9893 211594.359375 0.8244496029387386 2 -0.052822113037109375 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 118.89474601620944 0.0014903111061077812 1 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 78.584 0 0 6.3347 6.3347 88.506 0 0 0 58.57894990110104 25.708793562462446 25.708793562462446 9.208187539523749 0 2.6237125054200234 1.3979400086720375 1.916386562212267 0.6861818737241735 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}Q[HV]{M(Oxidation (M))|F}[WY];[{M(Oxidation (M))|F}T]NQ[HV]{M(Oxidation (M))|F}[WY];{[QS]|[NT]}{M(Oxidation (M))|F}[AG][HV]{M(Oxidation (M))|F}[WY];[{M(Oxidation (M))|F}T]N[AG][HV]{M(Oxidation (M))|F}[WY] 6.3347;5.5924;5.3462;1.1499;0.7653;0.40764;0.023027 +;-;-;-;-;-;- + 641 + NaN NaN 150703 NaN 7356 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9895 48.623 NaN 685840 35 0 84650 0.263 + 552 APEEHPVLL 9 77 502.7741653025147 1003.5337776718294 2 502.7742919921875 MULTI HCD FTMS 0 0 0 9893 224980.375 0.002157661257529456 80 -2.2526283264160156 2 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 92.8221339359638 0.0044520161739443126 1 [VP]DDH[VP]{I|L}{I|L} 9 3 + 49.12 0 0 4.8947 4.8947 82.369 0 0 0 2.565235559557607 2.565235559557607 2.565235559557607 2.565235559557607 0 1.2302046884880937 2 0.6237125054200234 0 [VP]DDH[VP]{I|L}{I|L};APEEH[VP]{I|L}{I|L};[PA]EEH[VP]{I|L}{I|L};[VP]DDH{I|L}[VP]{I|L};[PA]EEH{I|L}[VP]{I|L};[VP]{I|L}[H{I|L}]E[EP]A 4.8947;4.6391;4.3743;3.6961;3.1756;1.0631 -;+;+;-;-;- + 109 NaN NaN 189491 NaN 7357 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9896 48.627 NaN 515150 35 0 71071 0.261 -1 GIHVVVSNEM 10 78 550.7741225349966 1099.5336921367932 2 550.7849731445312 MULTI HCD FTMS 0 0 0 9893 24725.529296875 0.24242334123418782 6 -0.16844558715820312 3 Oxidation (M) _GIHVVVSNEM(Oxidation (M))_ ENSG00000115112|ENST00000263707|TFCP2L1;ENST00000464621.1_1_2:121981919-121991838:-|nuORF 24.020572477871973 0.2864316864133941 1 AKV{I|L}SNE{M(Oxidation (M))|F} 8 -1 70.999 0 0 6.4572 0 0 193.05171860231366 0 193.05171860231366 0 22.09814117179789 0 0 0 0.8807196863200843 0 0.7302046884880937 1.1549471895720984 AKV{I|L}SNE{M(Oxidation (M))|F} 6.4572 - 563 + NaN NaN 175953.5 NaN 7358 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9897 48.63 NaN 281040 35 0 75917 0.261 + 26186 SPQEDGVEL 9 48 487.22723330057363 972.4399136679473 2 487.2271728515625 MULTI HCD FTMS 0 0 0 9893 157470.09375 0.8065892610095133 -2 0.05941009521484375 4 Unmodified _SPQEDGVEL_ ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A 40.23920728925047 0.06424668180817725 1 DGVE{I|L} 5 4 55.433 0 0 5.7004 0 0 441.18660170722814 0 441.18660170722814 0 44.861081649832784 0 0 0 1.1989700043360187 0 0.8494850021680094 0 + DGVE{I|L} 5.7004 + + 107 NaN NaN 139744.5 NaN 7359 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9898 48.633 NaN 230190 35 0 21067 0.261 + 22409 QPTIERVAL 9 68 513.8004936584722 1025.5864343837443 2 513.800537109375 MULTI HCD FTMS 0 0 0 9893 60593.3359375 0.3233023198308812 5 -0.13872909545898438 5 Unmodified _QPTIERVAL_ ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF 13.042465956692817 0.2476723265019929 1 AN{I|L}EYR{I|L} 7 6 39.271 0 0 3.8291 0 0 148.12059718058634 0 148.12059718058634 0 17.972287753157516 0 0 0 0.3494850021680094 0 0.7059771852360797 0 AN{I|L}EYR{I|L} 3.8291 - 194 + NaN NaN 131242.9 NaN 7360 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9899 48.637 NaN 138530 35 0 17562 0.261 -1 MPDLPEKL 8 53 479.7494054996792 957.4842580661584 2 479.7491149902344 MULTI HCD FTMS 0 0 0 9893 95985.3046875 0.31255196641261485 20 -0.5653610229492188 6 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 34.40172386719151 0.3028461740636462 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[EP]K{I|L} 8 -1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} + + 26.84 3.7236 1.5255 2.8032 2.8032 59.161 0 0 0 0 12.91325298820567 0 0 0 1.6549471895720984 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[EP]K{I|L} 2.8032 + + 43 + NaN NaN 94537.4 NaN 7361 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9900 48.64 NaN 189400 35 0 20054 0.261 + 35790 YYNKVSTVF 9 73 560.7873043770403 1119.5600558208805 2 560.7874145507812 MULTI HCD FTMS 0 0 0 9893 68830.21875 0.89125583231304 -3 0.0858154296875 7 Unmodified _YYNKVSTVF_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 53.832793166522166 0.026208976789938845 1 YY[KS]{[NV]|[RG]}TV{M(Oxidation (M))|F} 9 2 + 61.845 0 0 5.524 5.524 90.917 0 0 0 12.599680878850918 44.648867983026506 12.599680878850918 28.010299956639805 0 1.4247425010840047 2 0.7742275032520141 0.2742275032520141 YY[KS]{[NV]|[RG]}TV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[NV]|[RG]}TV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WQ]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[{M(Oxidation (M))|F}H]|[RQ]}{[WT]|[RM]}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[{M(Oxidation (M))|F}H]|[RQ]}V{[WT]|[RM]}{M(Oxidation (M))|F} 5.524;3.0221;2.7124;2.112;1.3851 -;-;-;-;- 254 NaN NaN 109413.8 NaN 7362 2536 9893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9902 48.645 NaN 972380 35 0 351090 0.327 + 4830 EYYDKHFTEF 10 53 460.20313771531994 1377.58758374616 3 460.20318603515625 MULTI HCD FTMS 0 0 0 9901 333333.15625 1 0 0 1 Unmodified _EYYDKHFTEF_ ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A 5.40270961882225 0.4467063037482923 1 {M(Oxidation (M))|F} 1 9 20.485 0 0 1.487 0 0 1212.5085870194005 0 1212.5085870194005 0 5.268024924119672 0 0 0 0.3494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.487 + + 31 + NaN NaN 228877.8 NaN 7363 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9903 48.649 NaN 1223200 35 0 208020 0.261 + 25480 SFDSTVRL 8 67 462.7428072561624 923.4710615791248 2 462.7428283691406 MULTI HCD FTMS 0 0 0 9901 471483.5625 0.8181358541125286 -2 0.049495697021484375 2 Unmodified _SFDSTVRL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 110.6747026088012 0.033942646056284276 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L} 8 0 + 96.157 0 0 10.413 10.413 94.834 0 0 0 18.551434250963936 16.40978057358332 16.40978057358332 9.262137858390815 0 2.6549471895720984 2 1.8283409326844267 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTV[VG]{I|L};S{M(Oxidation (M))|F}DSTVR{I|L};{[{M(Oxidation (M))|F}D]|MM}SSTVR{I|L} 10.413;9.4095;8.4036;7.3794 +;-;+;- + 165 NaN NaN 270753.9 NaN 7364 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9904 48.653 NaN 214700 35 0 33458 0.261 + 21424 PVSREWTL 8 56 494.26664867831363 986.5187444234273 2 494.2666931152344 MULTI HCD FTMS 0 0 0 9901 159428.6875 0.5095915790281186 3 -0.08924484252929688 3 Unmodified _PVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 43.77239144664712 0.1824688044483776 1 PVWWW 5 5 42.263 0 0 4.284 0 0 0 229.11902795963127 229.11902795963127 12.781512503836439 0 0 0 0 1.305462187404089 2 0 0 PVWWW 4.284 - 52 + NaN NaN 113462 NaN 7365 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9905 48.656 NaN 459850 35 0 32471 0.261 + 15684 LPEPNHVML 9 91 533.2739697839737 1064.5333866347473 2 533.289794921875 MULTI HCD FTMS 0 0 0 9901 105746.125 0.5983474642991939 -2 0.049495697021484375 4 Oxidation (M) _LPEPNHVM(Oxidation (M))L_ ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2;ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2 51.629811660486645 0.02929079705179888 1 {I|L}PEH 4 5 51.873 0 0 4.8729 0 0 0 585.2543429010374 585.2543429010374 22.13152122505896 0 0 0 0 0.8494850021680094 1.2218487496163564 0.6747425010840047 0 {I|L}PEH 4.8729 - 554 + NaN NaN 158584.2 NaN 7366 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9906 48.66 NaN 370720 35 0 33744 0.261 + 14003 KYSRGAGLG 9 64 454.75275906745395 NaN 0 454.7527770996094 PEAK HCD FTMS 0 0 0 9901 68827.90625 0.8134655663825099 1 -0.02640533447265625 5 Unmodified _KYSRGAGLG_ ENSG00000103550|ENST00000219837|KNOP1 10.073929032068715 0.24642998803896465 1 T 1 9 4.8464 0 0 0.53404 0 0 63.03357985907582 740.3731954323084 803.4067752913843 0 0 0 0 0 0.3252574989159953 0 0 0 T 0.53404 - 12 + NaN NaN 137755.8 NaN 7367 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9907 48.663 NaN 245870 35 0 19761 0.261 + -1 SLHDNDLYSM 10 56 605.757382198524 1209.500211463848 2 605.7696533203125 MULTI HCD FTMS 0 0 0 9901 9685.736328125 0.6728906819625201 -1 0.026416778564453125 6 Oxidation (M) _SLHDNDLYSM(Oxidation (M))_ REV__ENSG00000174010|ENST00000328046|KLHL15 8.745405648335112 0.42901288225909884 1 H{M(Oxidation (M))|F}{I|L}H{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 9 -1 + 42.59 0 0 3.5213 3.5213 88.779 0 0 0 16.387437564371012 12.191964632593582 12.191964632593582 42.59040959333973 0 0.2742275032520141 0 0.3807196863200844 0 H{M(Oxidation (M))|F}{I|L}H{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 3.5213 - 149 + NaN NaN 124168.2 NaN 7368 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9908 48.666 NaN 187020 35 0 31370 0.261 + 15870 LPLEEHYRF 9 41 602.3115281391024 1202.6085033450047 2 602.3114624023438 MULTI HCD FTMS 0 0 0 9901 80556.765625 1 0 0 7 Unmodified _LPLEEHYRF_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000013016|ENST00000322054|EHD3;ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1;nc|ENSG00000013016|Q9NZN3-2|EHD3 32.037481411007896 0.10189719824197178 1 {I|L}P{I|L}EEHYR{M(Oxidation (M))|F} 9 0 + 69.971 0 0 5.8183 5.8183 91.028 0 0 0 53.51728122573242 8.697114610913488 8.697114610913488 22.998037644757048 0 1.5356668758921828 0 0 0 + + {I|L}P{I|L}EEHYR{M(Oxidation (M))|F};{I|L}PHHPHYR{M(Oxidation (M))|F};{I|L}PHHHPYR{M(Oxidation (M))|F};[{I|L}P]EE{I|L}HYR{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}PE{I|L}HYR{M(Oxidation (M))|F};[{I|L}P]HHHPYR{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QN]|[E{I|L}]|[KN]}HPYR{M(Oxidation (M))|F};[{I|L}P]HHPHYR{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QN]|[E{I|L}]|[KN]}PHYR{M(Oxidation (M))|F} 5.8183;3.9059;3.7182;2.8032;2.7842;2.1637;2.1447;1.976;1.957 +;-;-;-;-;-;-;-;- + 212 + NaN NaN 114263.4 NaN 7369 2537 9901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9910 48.671 NaN 788230 35 0 253840 0.327 -1 NMEPNSDELL 10 64 589.2554832117141 1176.4964134902282 2 589.2561645507812 MULTI HCD FTMS 0 0 0 9909 336204.4375 0.6574390695658688 5 -0.14738845825195312 1 Oxidation (M) _NM(Oxidation (M))EPNSDELL_ ENSG00000169554|ENST00000627532|ZEB2;nc|ENSG00000169554|O60315-2|ZEB2 15.248480904072842 0.3684828712757339 1 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 58.756 0 0 4.9941 0 0 543.1559925763687 0 543.1559925763687 0 27.073259432077563 0 0 0 1.4247425010840047 0 0.805462187404089 0 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 4.9941 - 216 NaN NaN 217620.9 NaN 7370 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9911 48.676 NaN 209380 35 0 46927 0.264 + 31901 VYNNIMRHYL 10 44 441.5605153818408 1321.6597167457223 3 441.5604248046875 MULTI HCD FTMS 0 0 0 9909 59231.94921875 0.14669871609567145 10 -0.2887535095214844 2 Unmodified _VYNNIMRHYL_ ENSG00000115267|ENST00000649979|IFIH1 8.444304893310646 0.4306066564229251 1 VY 2 8 45.217 0 0 3.4212 0 0 0 1056.5047487139798 1056.5047487139798 24.247425010840047 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.4212 + + 19 + NaN NaN 110135.4 NaN 7371 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9912 48.679 NaN 99791 35 0 11379 0.261 -1 LCRHKENKF 9 45 616.3219043160758 1230.6292556989515 2 616.3216552734375 MULTI HCD FTMS 0 0 0 9909 93717.1875 0.21230231362409632 8 -0.23286819458007812 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))RHKENKF_ ENST00000557789.5_1_15:64446168-64446417:+|nuORF 6.723162845929126 0.3000504726104499 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}QKE{M(Oxidation (M))|F} 7 -1 54.545 0 0 4.4323 0 0 0 288.13535486392817 288.13535486392817 33.57586369482071 0 0 0 0 1.5 0 0.7614393726401688 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}QKE{M(Oxidation (M))|F} 4.4323 - 150 + NaN NaN 94293.6 NaN 7372 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9913 48.683 NaN 167750 35 0 18278 0.261 -1 KYLEMIYSM 9 57 605.2806176118941 1208.546682290588 2 605.2803344726562 MULTI HCD FTMS 0 0 0 9909 82321.34375 0.9060633772085395 -3 0.07590103149414062 4 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 1 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 57.925 0 0 4.7929 0 0 404.24043471504064 0 404.24043471504064 0 46.95554701812867 0 0 0 2.1549471895720984 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.7929 + + 100 NaN NaN 115903.6 NaN 7373 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9914 48.686 NaN 63191 35 0 4802.9 0.262 + 30787 VPRSFDELG 9 44 510.26147327888475 1018.5083936245695 2 510.26171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VPRSFDELG_ ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-2|ACLY;nc|ENSG00000131473|P53396-3|ACLY 10.823927491677226 0.26684000660059787 1 [VP]DD{M(Oxidation (M))|F}{I|L} 6 5 35.903 0 0 3.525 0 0 0 329.15839563541255 329.15839563541255 31.923487412610356 0 0 0 0 0.4247425010840047 2 0.3494850021680094 0 [VP]DD{M(Oxidation (M))|F}{I|L} 3.525 - 31 + NaN NaN 93888.4 NaN 7374 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9915 48.689 NaN 412540 35 0 75278 0.261 + -1 CSRLDECL 8 59 498.2183863098421 994.4222196864843 2 498.7029113769531 MULTI HCD FTMS 0 0 0 9909 11155.3427734375 0.6364034198769007 -2 0.052822113037109375 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))SRLDECL_ REV__ENSG00000132470|ENST00000200181|ITGB4;REV__ENST00000580542.5_1_17:73720783-73737087:+|nuORF;REV__ENST00000584374.1_1_17:73727904-73735976:+|nuORF;REV__ITGB4-SAP30BP|1|fusion;REV__ITGB4-SAP30BP|2|fusion;REV__nc|ENSG00000132470|P16144-2|ITGB4;REV__nc|ENSG00000132470|P16144-3|ITGB4;REV__nc|ENSG00000132470|P16144-4|ITGB4;REV__nc|ENSG00000132470|P16144-5|ITGB4 10.823927491677226 0.514154816617796 1 {M(Oxidation (M))|F}GPD[TP]{M(Oxidation (M))|F} 7 -1 20.564 0 0 2.068 0 0 215.10613189527174 0 215.10613189527174 0 7.376750844102773 0 0 0 0 0 0.75 0 {M(Oxidation (M))|F}GPD[TP]{M(Oxidation (M))|F} 2.068 - 80 + NaN NaN 155328.9 NaN 7375 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9916 48.693 NaN 109230 35 0 11525 0.261 + 20037 NYIHVGAQL 9 49 507.7718694095551 NaN 0 507.77197265625 PEAK HCD FTMS 0 0 0 9909 28619.27734375 0.7194156760285342 2 -0.06283950805664062 7 Unmodified _NYIHVGAQL_ ENSG00000176658|ENST00000318217|MYO1D 24.020572477871973 0.16041128140741606 1 {I|L} 1 8 14.292 0 0 1.4101 0 0 277.1052146309268 620.3167818658811 897.4219964968079 0 0 0 0 0 0.7302046884880937 0 0 0 + {I|L} 1.4101 + + 14 + NaN NaN 104061 NaN 7376 2538 9909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9918 48.698 NaN 2012100 35 0 123040 0.326 + 34240 YPDRIMNTF 9 118 586.7737018509798 1171.5328507687595 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9917 1288598.375 0.3218248523599156 16 -0.45986175537109375 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 203.63889746883072 1.2993995354712843E-17 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 112.59 0 0 9.6108 9.6108 95.772 0 0 0 64.70634835037994 13.46787486224656 13.46787486224656 14.857280815788144 0 2.586696871556164 1.6989700043360187 2.2658715643802765 1.1318108876706972 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[VS][C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F} 9.6108;8.3426;6.6854;6.4235;6.1508;5.8994;5.6375;5.3648;5.3615;5.3126 +;-;+;-;-;-;-;-;-;- + 9846 + NaN NaN 383295.8 NaN 7377 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9919 48.702 NaN 1181700 35 0 77652 0.261 + 13041 KYKGIFNGF 9 112 537.2925523775791 1072.5705518219581 2 537.2926025390625 MULTI HCD FTMS 0 0 0 9917 707162.5 0.7627058375854366 2 -0.059505462646484375 2 Unmodified _KYKGIFNGF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 171.46704133333822 3.0280501322097084E-09 1 KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG 8 1 69.385 0 0 6.4691 0 0 0 162.05622278385002 162.05622278385002 50.088643834802156 0 0 0 0 2.5356668758921828 0 0 1.6861818737241734 + KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG 6.4691 + + 1011 + NaN NaN 269309.5 NaN 7378 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9920 48.706 NaN 995190 35 0 270120 0.262 -1 0 67 432.2308175453375 1293.6706232362126 3 432.2311096191406 MULTI HCD FTMS 0 0 0 9917 310014.34375 0.9001183437536265 -2 0.052806854248046875 3 NaN NaN 1 YYVTE{I|L} 6 -1 77.696 0 0 6.0058 0 0 0 522.2789829395526 522.2789829395526 55.477372199242296 0 0 0 0 0.4247425010840047 2 1.2302046884880937 0 YYVTE{I|L} 6.0058 - 73 + NaN NaN 256487.9 NaN 7379 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9921 48.709 NaN 1457400 35 0 193090 0.261 + 8287 GVTIEEAI 8 74 416.22785667409676 NaN 0 416.220458984375 PEAK HCD FTMS 0 0 0 9917 20186.892578125 0.6269614897819975 4 -0.1209869384765625 4 Unmodified _GVTIEEAI_ REV__ENSG00000062598|ENST00000290246|ELMO2;REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2 14.581692164780916 0.38795613832665576 1 {M(Oxidation (M))|F}KEV 4 -1 24.24 0 0 2.919 0 0 53.071234724931806 271.07230065775275 324.14353538268455 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}KEV 2.919 - 70 + NaN NaN 319601.8 NaN 7380 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9922 48.712 NaN 201780 35 0 15572 0.261 + 26698 SYAQYVHNL 9 63 547.7673550732404 1093.5201572132808 2 547.7671508789062 MULTI HCD FTMS 0 0 0 9917 74356.9140625 0.9526524662234087 1 -0.03643798828125 5 Unmodified _SYAQYVHNL_ ENSG00000175581|ENST00000310614|MRPL48;ENST00000543374.1_1_11:73555872-73556061:+|nuORF;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48 49.55428908609986 0.03219431099695407 1 VYQA[MT] 6 7 50.278 0 0 4.5978 0 0 382.19615370918126 0 382.19615370918126 0 30.814243664528576 0 0 0 2.1861818737241734 0 0 0 VYQA[MT] 4.5978 - 299 NaN NaN 119885.2 NaN 7381 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9923 48.716 NaN 181350 35 0 16633 0.261 + 34747 YPYEHSYGL 9 56 564.7534599462454 1127.4923669592906 2 564.7530517578125 MULTI HCD FTMS 0 0 0 9917 68159.2109375 0.5463355589507657 -6 0.1650390625 6 Unmodified _YPYEHSYGL_ ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2 57.47134341890925 0.0211188941628804 1 YP 2 7 39.949 0 0 3.5431 0 0 0 864.3533291340461 864.3533291340461 -1.2814469716013122 0 -1.2814469716013122 0 0 0.5 1.3979400086720375 0 0 + YP 3.5431 + + 78 + NaN NaN 116303.1 NaN 7382 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9924 48.719 NaN 140680 35 0 8815.3 0.261 + 6200 FPENFHQNL 9 59 573.2722932653356 1144.5300335974712 2 573.2718505859375 MULTI HCD FTMS 0 0 0 9917 53713.7734375 0.4494142496864725 -7 0.19807052612304688 7 Unmodified _FPENFHQNL_ ENSG00000110442|ENST00000263401|COMMD9;ENST00000526789.1_1_11:36300025-36310962:-|nuORF;ENST00000528608.5_1_11:36298627-36310962:-|nuORF;nc|ENSG00000110442|Q9P000-2|COMMD9 26.268140514670165 0.13340543277302316 1 QPE 3 7 23.43 0 0 2.0471 0 0 772.3325062482437 0 772.3325062482437 0 8.737125054200233 0 0 0 0 0 0 0.6747425010840047 QPE 2.0471 - 86 NaN NaN 109621.9 NaN 7383 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9925 48.722 NaN 96813 35 0 16850 0.263 + 35076 YTVDVYLEDSF 11 38 450.8730786340123 NaN 0 450.888671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YTVDVYLEDSF_ REV__ENSG00000113494|ENST00000618457|PRLR;REV__ENST00000509934.1_1_5:35068382-35086329:-|nuORF;REV__nc|ENSG00000113494|P16471-3|PRLR;REV__nc|ENSG00000113494|P16471-4|PRLR;REV__nc|ENSG00000113494|P16471-5|PRLR;REV__nc|ENSG00000113494|P16471-6|PRLR;REV__nc|ENSG00000113494|P16471-7|PRLR;REV__nc|ENSG00000113494|P16471-8|PRLR;REV__nc|ENSG00000113494|P16471-9|PRLR 5.047519993296601 0.32780178285717215 1 A 1 -1 6.9897 0 0 0.77687 0 0 663.615666079745 162.0556582086547 825.6713242883997 0 0 0 0 0 0 0 0 0 A 0.77687 - 3 + NaN NaN 99235.3 NaN 7384 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9926 48.726 NaN 311810 35 0 35390 0.261 + 4775 EYVEKFYRI 9 63 623.8270445852378 1245.6395362372755 2 623.8270874023438 MULTI HCD FTMS 0 0 0 9917 65911.34375 0.13637952815036772 -4 0.10230255126953125 9 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 67.08073823543168 0.010032840856489532 1 EYVEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 84.452 0 0 6.7798 6.7798 92.65 0 0 0 63.3819738571742 14.282322625996912 14.282322625996912 22.0217596488785 0 1.3494850021680094 1.2218487496163564 0.4247425010840047 0.28872548999643577 + + EYVEK{M(Oxidation (M))|F}YR{I|L};{I|L}DYEK{M(Oxidation (M))|F}YR{I|L} 6.7798;5.0119 +;- + 146 + NaN NaN 137936.3 NaN 7385 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9927 48.729 NaN 112820 35 0 12543 0.263 + 20265 NYLQHVQL 8 62 507.7718694095551 NaN 0 507.7711181640625 PEAK HCD FTMS 0 0 0 9917 29937.462890625 0.7525515003523171 3 -0.08922195434570312 10 Unmodified _NYLQHVQL_ ENSG00000125826|ENST00000356286|RBCK1;nc|ENSG00000125826|Q9BYM8-3|RBCK1 28.486842064014134 0.3795038552627567 1 {I|L} 1 7 13.227 0 0 1.305 0 0 277.1073755771386 620.3167818658811 897.4241574430198 0 0 0 0 0 0.7742275032520141 0 0 0 + {I|L} 1.305 + + 18 + NaN NaN 104769.6 NaN 7386 2539 9917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9929 48.734 NaN 445280 35 0 53522 0.327 + 34347 YPEGFEIHSM 10 67 613.2634398604836 1224.512326787767 2 613.263427734375 MULTI HCD FTMS 0 0 0 9928 250129.28125 0.739656468533488 2 -0.052783966064453125 1 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 155.02607137521346 8.105858163714844E-08 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 120.25 0 0 9.8198 9.8198 97.142 0 0 0 89.34955642535897 15.056584229283843 15.056584229283843 24.03720958383822 0 2.659379381312206 1.5228787452803376 2.329689690656103 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};[EP]YG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};[EP]GY{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{[QG]|[NA]}WEPY;YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]} 9.8198;7.8568;7.2415;6.8015;6.5646;6.3415;6.2848;6.202;6.189;6.1671 +;-;+;-;-;-;-;-;-;- + 2325 + NaN NaN 153396.7 NaN 7387 2540 9928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9930 48.739 NaN 666490 35 0 47484 0.261 -1 LPEPNHVML 9 100 533.2739697839737 1064.5333866347473 2 533.27392578125 MULTI HCD FTMS 0 0 0 9928 152931.953125 0.8653408941714595 1 -0.023067474365234375 2 Oxidation (M) _LPEPNHVM(Oxidation (M))L_ ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2;ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2 43.77239144664712 0.04802738721622131 1 {I|L}PE 3 -1 46.488 0 0 4.367 0 0 0 722.3298524139574 722.3298524139574 21.539347100971433 0 0 0 0 0.7134679910804405 1.3010299956639813 0.7134679910804405 0 {I|L}PE 4.367 + + 541 + NaN NaN 190513.8 NaN 7388 2540 9928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9931 48.742 NaN 808600 35 0 259160 0.261 + 8534 HAIEESVVL 9 59 498.77171872557665 995.5288845179533 2 498.77178955078125 MULTI HCD FTMS 0 0 0 9928 305948.8125 0.3904202936394392 -4 0.11566162109375 3 Unmodified _HAIEESVVL_ ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF 15.847184025352803 0.2234401846867398 1 VV[{M(Oxidation (M))|F}V]G[TP]{M(Oxidation (M))|F} 8 9 28.461 0 0 2.8589 0 0 131.09557025907992 0 131.09557025907992 0 12.69000227735063 0 0 0 0.5 0 0.805462187404089 0 VV[{M(Oxidation (M))|F}V]G[TP]{M(Oxidation (M))|F} 2.8589 - 130 + NaN NaN 209650.2 NaN 7389 2540 9928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9932 48.746 NaN 503940 35 0 50275 0.261 + 12894 KYGALVNNF 9 76 513.2742559732488 1024.5339590132976 2 513.2744140625 MULTI HCD FTMS 0 0 0 9928 172785.734375 0.6545259728437368 -2 0.06283950805664062 4 Unmodified _KYGALVNNF_ ENSG00000117481|ENST00000474844|NSUN4;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;ENST00000495427.1_2_1:46810505-46812688:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant 99.79894945604345 0.0042691968066200965 1 [YK]Q{I|L}VNN{M(Oxidation (M))|F} 8 2 + 79.02 0 0 7.7128 7.7128 91.763 0 0 0 3.679767852945943 7.957574905606748 3.679767852945943 9.262137858390815 0 2.75 0 0 1.2926740567922437 [YK]Q{I|L}VNN{M(Oxidation (M))|F};[YK][AG]{I|L}VNN{M(Oxidation (M))|F};[YK]Q{I|L}VGGN{M(Oxidation (M))|F};[YK]GA{I|L}VNN{M(Oxidation (M))|F};[YK]Q{I|L}VNGG{M(Oxidation (M))|F};[YQ]K{I|L}VNN{M(Oxidation (M))|F};[YK][AG]{I|L}VGGN{M(Oxidation (M))|F};[YK]GA{I|L}VNGG{M(Oxidation (M))|F};[YK]GA{I|L}VGGN{M(Oxidation (M))|F};[YK][AG]{I|L}VNGG{M(Oxidation (M))|F} 7.7128;6.8088;6.8088;6.687;6.4913;6.4872;5.91;5.7882;5.7882;5.5925 -;+;-;+;-;-;-;-;-;- + 1736 + NaN NaN 166271.2 NaN 7390 2540 9928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9933 48.749 NaN 158480 35 0 21653 0.261 + 26509 SVINPGAIYR 10 44 545.3063271392829 1088.5981013453656 2 545.3068237304688 MULTI HCD FTMS 0 0 0 9928 53164.66015625 0.9847686724078301 1 -0.023067474365234375 5 Unmodified _SVINPGAIYR_ ENSG00000115232|ENST00000397033|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4 24.990960013464015 0.27735500881591096 1 [VS]{I|L}N[QP]{I|L}[YR] 9 2 + 50.366 0 0 4.6266 4.6266 85.618 0 0 0 38.89506772603255 3.9254497678533085 3.9254497678533085 9.208187539523749 0 1.3252574989159953 1.6989700043360187 0 0 [VS]{I|L}N[QP]{I|L}[YR];[VS]{I|L}GG[QP]{I|L}[YR];[VS]{I|L}N[HA][PA]{I|L}[PA];[VS]{I|L}[PA][NG]{I|L}[YR];{[QV]|[N{I|L}]|[RA]|[KV]}[VS][YV]N{I|L}[PA] 4.6266;3.7808;2.9847;2.7684;2.0373 -;-;-;-;- 123 + NaN NaN 107889.5 NaN 7391 2540 9928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9934 48.752 NaN 331900 35 0 58251 0.263 + 13027 KYITKSFNFY 10 59 437.5638773637588 1309.6698026914764 3 437.9087829589844 MULTI HCD FTMS 0 0 0 9928 22913.69921875 0.3078329132444246 -4 0.11566162109375 6 Unmodified _KYITKSFNFY_ ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF;nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 11.517880264261096 0.4033776509493788 1 KV{M(Oxidation (M))|F}Y 4 7 25.477 0 0 1.9453 0 0 754.3758096268265 0 754.3758096268265 0 6.893426046896494 0 0 0 0.5 0 0 0 KV{M(Oxidation (M))|F}Y 1.9453 - 27 + NaN NaN 147710.8 NaN 7392 2540 9928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9936 48.757 NaN 1390800 35 0 114960 0.327 + 1343 AYPHNLMTF 9 82 555.2577483138126 1108.5009436944251 2 555.2578125 MULTI HCD FTMS 0 0 0 9935 717031.8125 0.4984786474030945 -6 0.16180801391601562 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 152.41221235671458 6.276234901293889E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 100.27 0 0 9.046 9.046 90.243 0 0 0 19.743464415792644 54.47334607195977 19.743464415792644 4.503187623076954 0 2.809894379144197 2 0.75 0.2614393726401688 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]MAT{M(Oxidation (M))|F};[YT]M{I|L}NHPS{M(Oxidation (M))|F};[RN][TP]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F} 9.046;8.6397;7.9795;7.5732;6.0256;5.6193;5.4133;5.3167;5.2972;5.2868 +;-;-;-;-;-;-;-;-;- + 5063 NaN NaN 295028.9 NaN 7393 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9937 48.762 NaN 223420 35 0 27287 0.261 + 18749 NAAFATVAAI 10 55 474.7611712386832 947.5077895441664 2 474.760986328125 MULTI HCD FTMS 0 0 0 9935 144326.1875 0.15698436681884118 8 -0.2324676513671875 2 Unmodified _NAAFATVAAI_ REV__ENSG00000138356|ENST00000374700|AOX1 43.77239144664712 0.11267038882370725 1 {[QG]|[NA]}A{M(Oxidation (M))|F}[WR]A 7 -1 58.332 0 0 6.1564 0 0 0 128.07069172606012 128.07069172606012 44.352963307746194 0 0 0 0 1.8807196863200843 1.6989700043360187 0 0.6549471895720984 {[QG]|[NA]}A{M(Oxidation (M))|F}[WR]A 6.1564 - 79 NaN NaN 110974.9 NaN 7394 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9938 48.765 NaN 141250 35 0 16590 0.261 + 35317 YWMHVQNTF 9 49 621.2743008855266 1240.534048837853 2 621.2742309570312 MULTI HCD FTMS 0 0 0 9935 103342.6875 0.4026611953535075 7 -0.20284652709960938 3 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 71.92227651296345 0.008466197542043549 1 VQNT{M(Oxidation (M))|F} 5 4 51.81 0 0 4.1765 0 0 633.237108299025 0 633.237108299025 0 23.994112934271143 0 0 0 1.2614393726401687 0 0.4247425010840047 0 + VQNT{M(Oxidation (M))|F} 4.1765 + + 160 NaN NaN 99741.6 NaN 7395 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9939 48.769 NaN 230160 35 0 23637 0.262 + 6905 FPVEVNSQK 9 62 524.2770320826636 1046.539511232127 2 524.2767333984375 MULTI HCD FTMS 0 0 0 9935 77520.6953125 0.1831091779714395 8 -0.2324676513671875 4 Unmodified _FPVEVNSQK_ REV__ENSG00000136381|ENST00000258886|IREB2;REV__nc|ENSG00000136381|P48200-2|IREB2 21.536976647645854 0.1742816388551942 1 {I|L}MVESE 6 -1 70.711 0 0 6.7567 0 0 0 355.2094861994625 355.2094861994625 54.055781609639766 0 0 0 0 1.6549471895720984 1.5228787452803376 0.3807196863200844 0 {I|L}MVESE 6.7567 - 184 + NaN NaN 116664.6 NaN 7396 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9940 48.772 NaN 183540 35 0 20265 0.261 + 9775 HYKPTPLYF 9 57 583.3056984234008 1164.5968439136016 2 583.305908203125 MULTI HCD FTMS 0 0 0 9935 75012 0.06859246545435925 39 -1.1041183471679688 5 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 45.69961567697781 0.039180348357221985 1 HYK[TP][{I|L}P]Y{M(Oxidation (M))|F} 9 0 + 47.074 0 0 4.0421 4.0421 89.509 0 0 0 24.114999749340384 9.205737003855745 9.205737003855745 47.073799922781134 0 1.774227503252014 1.6989700043360187 0 0 + + HYK[TP][{I|L}P]Y{M(Oxidation (M))|F} 4.0421 + + 52 + NaN NaN 113938.6 NaN 7397 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9941 48.775 NaN 266660 35 0 27187 0.264 + 5663 FNSWLDPEFF 10 49 434.53143526363704 1300.5724763911112 3 434.5312194824219 MULTI HCD FTMS 0 0 0 9935 35767.00390625 0.7172673980381347 1 -0.02971649169921875 6 Unmodified _FNSWLDPEFF_ ENST00000416928.6_1_2:177040485-177040746:-|nuORF 3.3196427980023873 0.4577323075863651 1 G{M(Oxidation (M))|F} 2 9 16.198 0 0 1.2454 0 0 1078.472285206344 0 1078.472285206344 0 12.218487496163561 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.2454 - 30 + NaN NaN 140591.5 NaN 7398 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9942 48.779 NaN 93905 35 0 16891 0.261 -1 WQHMETIEL 9 43 601.7790637740396 1201.5435746148792 2 601.77880859375 MULTI HCD FTMS 0 0 0 9935 29222.1015625 0.09180159954039671 -24 0.7008590698242188 7 Oxidation (M) _WQHM(Oxidation (M))ETIEL_ ENSG00000107186|ENST00000319217|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-5|MPDZ 9.38312468134398 0.279288223203164 1 VE{I|L} 3 -1 28.94 0 0 2.4086 0 0 842.3413563459 0 842.3413563459 0 18.138181262758266 0 0 0 0.4247425010840047 0 0 0 VE{I|L} 2.4086 - 32 NaN NaN 104729.5 NaN 7399 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9943 48.782 NaN 350350 35 0 70312 0.264 + 14244 LCFFITLFGSY 11 63 437.5547710259077 NaN 0 437.56402587890625 PEAK HCD FTMS 0 0 0 9935 5520.07958984375 1 0 0 8 Unmodified _LCFFITLFGSY_ ENSG00000163354|ENST00000368424|DCST2;nc|ENSG00000163354|Q5T1A1-2|DCST2 2.6312355333042263 0.3346560860168035 1 {M(Oxidation (M))|F} 1 10 3.9794 0 0 0.45578 0 0 544.9530041106061 178.05097376041252 723.0039778710186 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.45578 + + 5 + NaN NaN 141653.1 NaN 7400 2541 9935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9945 48.787 NaN 867240 35 0 218030 0.327 + 25481 SFDSTVRL 8 63 462.7428072561624 923.4710615791248 2 462.7428283691406 MULTI HCD FTMS 0 0 0 9944 261507.578125 0.4537776983183707 3 -0.087677001953125 1 Unmodified _SFDSTVRL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 75.76082778847304 0.023045096181382205 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L} 8 0 + 86.808 0 0 9.4002 9.4002 94.109 0 0 0 8.883578386120234 8.883578386120234 8.883578386120234 9.262137858390815 0 2.3494850021680094 2 1.1989700043360187 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTV[VG]{I|L} 9.4002;8.3972 +;- + 98 NaN NaN 216650.3 NaN 7401 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9946 48.791 NaN 388330 35 0 56482 0.261 + -1 YTRSAVKEM 9 67 550.7741847953853 NaN 0 550.7850341796875 PEAK HCD FTMS 0 0 0 9944 13515.4384765625 0.9610718181938128 1 -0.031764984130859375 2 Oxidation (M) _YTRSAVKEM(Oxidation (M))_ REV__ENSG00000162729|ENST00000314485|IGSF8;REV__nc|ENSG00000162729|Q969P0-2|IGSF8;REV__nc|ENSG00000162729|Q969P0-3|IGSF8 20.453626601364224 0.18435338882370536 1 AKV{I|L}SNE 7 -1 54.149 0 0 4.9247 0 0 193.05482712520615 162.05628381900627 355.11111094421244 0 0 0 0 0 0.9247425010840047 0 0.7742275032520141 1.110924374808178 AKV{I|L}SNE 4.9247 - 276 + NaN NaN 137233.9 NaN 7402 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9947 48.795 NaN 260200 35 0 23270 0.261 + 30624 VPDGASDAEL 10 62 487.22723330057363 972.4399136679473 2 487.22723388671875 MULTI HCD FTMS 0 0 0 9944 56709.1875 0.29047434054807586 4 -0.11724472045898438 3 Unmodified _VPDGASDAEL_ ENST00000331268.9_1_15:79165226-79165316:+|nuORF 19.256988751693697 0.33098864134661865 1 HAE{I|L} 4 7 26.242 0 0 2.6986 0 0 504.2127235818129 0 504.2127235818129 0 -3.4606969964485756 -3.4606969964485756 0 0 0.7302046884880937 0 0.9247425010840047 0 HAE{I|L} 2.6986 - 151 + NaN NaN 145095.7 NaN 7403 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9948 48.798 NaN 133800 35 0 26494 0.261 -1 0 29 568.2628807244238 567.2556042578237 1 568.2615356445312 MULTI HCD FTMS 0 0 0 9944 73532.046875 0.4355821196680874 -3 0.08922195434570312 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 105148.8 NaN 7404 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9949 48.802 NaN 90234 35 0 13625 0.262 -1 MPDLPEKL 8 49 479.7494054996792 957.4842580661584 2 479.74908447265625 MULTI HCD FTMS 0 0 0 9944 49531.20703125 0.16128589899057327 26 -0.7358474731445312 5 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 17.11289562659939 0.4678830079548939 1 K{I|L} 2 -1 25.969 0 0 2.7122 0 0 698.2933847113285 0 698.2933847113285 0 10.039237471316296 0 0 0 0.5 0 0 0 K{I|L} 2.7122 + + 29 NaN NaN 98181.1 NaN 7405 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9950 48.807 NaN 653050 35 0 49180 0.261 + 12947 KYIDQKFVL 9 94 577.3344707949477 1152.6543886566953 2 577.3347778320312 MULTI HCD FTMS 0 0 0 9944 195840 0.1564896113579623 -5 0.14202880859375 6 Unmodified _KYIDQKFVL_ ENSG00000078304|ENST00000694906|PPP2R5C;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E 125.0377797344192 0.0009059125702818869 1 [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L} 9 0 + 86.543 0 0 7.5081 7.5081 90.682 0 0 0 10.004311474114331 57.64929134155855 10.004311474114331 9.208187539523749 0 2.06295299324845 0 0.5994850021680094 1.4846368802282015 + + [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]K{M(Oxidation (M))|F}V{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}KV{I|L};[YK]{I|L}DQKV{M(Oxidation (M))|F}{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}KV{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}VK{I|L};[YK]{I|L}D[AG]KV{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]G{I|L}YQSKV{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}VK{I|L};[{M(Oxidation (M))|F}V]G{I|L}Y[AG]SKV{I|L} 7.5081;6.7092;6.6367;6.1613;5.8378;5.5511;5.3625;4.8898;4.7522;4.0948 +;-;-;-;-;-;-;-;-;- + 2000 NaN NaN 183793.5 NaN 7406 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9951 48.81 NaN 190320 35 0 34559 0.261 + 14100 KYYRQTLLF 9 57 616.3455972069337 1230.6766414806673 2 616.3455200195312 MULTI HCD FTMS 0 0 0 9944 71365.2734375 0.523723985527745 -3 0.08922195434570312 7 Unmodified _KYYRQTLLF_ ENSG00000117597|ENST00000491415|UTP25 28.233623360808718 0.11935903763491834 1 KEK{I|L}{M(Oxidation (M))|F} 5 6 41.983 0 0 3.4113 0 0 567.2687245099625 0 567.2687245099625 0 15.784634594678266 0 0 0 0.5 0 0.4247425010840047 0.7302046884880937 KEK{I|L}{M(Oxidation (M))|F} 3.4113 - 118 NaN NaN 116907.6 NaN 7407 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9952 48.814 NaN 153950 35 0 14851 0.263 + 32296 VYVAGAPRF 9 52 490.2715370337541 978.5285211343082 2 490.2720947265625 MULTI HCD FTMS 0 0 0 9944 35334.12109375 0.8315447063290186 -1 0.02971649169921875 8 Unmodified _VYVAGAPRF_ ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11 36.04419817259434 0.08350412372117409 1 [YV]RQAV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 8 5 + 63.193 0 0 6.4579 6.4579 84.505 0 0 0 0 0 0 1.3206844429176101 0 1.3807196863200843 1.6989700043360187 0 0 [YV]RQAV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]VAQR{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]VA[AG]R{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]R[AG]AV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]VA[R{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]VGAAR{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6.4579;6.323;5.5114;5.3764;4.9713;4.1238 -;-;-;-;-;- 132 + NaN NaN 111631.7 NaN 7408 2542 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9954 48.819 NaN 1710100 35 0 79554 0.327 + 13030 KYITQGQLL 9 112 532.3093632397658 1062.6041735463316 2 532.80908203125 MULTI HCD FTMS 0 0 0 9953 506163.78125 0.7276672333853809 -1 0.031764984130859375 1 Unmodified _KYITQGQLL_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 65.47368725323818 0.010552856507075443 1 [Y{I|L}]KTQGQ{I|L}{I|L} 9 2 + 50.932 0 0 4.7932 4.7932 81.128 0 0 0 0.0504417788842062 10.131976298668377 0.0504417788842062 0.3003327262797626 0 1.7231975075880328 0.6989700043360187 0 0.8171028087033153 [Y{I|L}]KTQGQ{I|L}{I|L};[YK]{I|L}TQGQ{I|L}{I|L};[K{I|L}]YTQGQ{I|L}{I|L};[Y{I|L}]KT[AG]GQ{I|L}{I|L};[YK]{I|L}T[AG]GQ{I|L}{I|L};[Y{I|L}]TKQGQ{I|L}{I|L};[K{I|L}]YT[AG]GQ{I|L}{I|L};[Y{I|L}]K[NG]DK{I|L}{I|L};[YK]{I|L}[NG]DK{I|L}{I|L};[{I|L}T]YKQGQ{I|L}{I|L} 4.7932;4.7649;4.1709;3.9266;3.8983;3.4954;3.3044;2.9764;2.9481;2.6289 -;+;-;-;-;-;-;-;-;- + 2444 NaN NaN 342822.3 NaN 7409 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9955 48.823 NaN 505550 35 0 161200 0.261 + -1 EGTPSCEGDII 11 54 589.2554832117141 1176.4964134902282 2 589.2562866210938 MULTI HCD FTMS 0 0 0 9953 187885.484375 0.3674051983101282 10 -0.2861785888671875 2 Carbamidomethyl (C) _EGTPSC(Carbamidomethyl (C))EGDII_ REV__ENST00000556258.1_1_14:100607517-100608273:+|nuORF 13.042465956692817 0.3434429782671734 1 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 51.035 0 0 4.3379 0 0 496.21977431465 0 496.21977431465 0 38.103531844243186 0 0 0 1 0 0.7302046884880937 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 4.3379 - 84 NaN NaN 166598.9 NaN 7410 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9956 48.827 NaN 574110 35 0 82243 0.262 + 553 APEEHPVLL 9 69 502.7741653025147 1003.5337776718294 2 502.7742614746094 MULTI HCD FTMS 0 0 0 9953 240273.5 0.0023043290871970668 87 -2.4635276794433594 3 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 48.345845343767074 0.03388484103555672 1 APEEH[VP]{I|L}{I|L} 9 0 + 37.898 0 0 3.7764 3.7764 88.865 0 0 0 8.957509373371629 8.657424843733644 8.657424843733644 37.897671988775706 0 1.805462187404089 0 0 0 + + APEEH[VP]{I|L}{I|L} 3.7764 + + 52 + NaN NaN 168978.5 NaN 7411 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9957 48.83 NaN 432390 35 0 32050 0.261 + 18189 MPDLENRVL 9 80 551.781073415985 1101.54759389877 2 551.7808837890625 MULTI HCD FTMS 0 0 0 9953 159572.78125 0.9402193611762848 2 -0.055912017822265625 4 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 65.47368725323818 0.010552856507075443 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}ENRV{I|L} 9 0 + 55.06 0 0 4.9984 4.9984 82.001 0 0 0 1.3021124171160636 1.3021124171160636 1.3021124171160636 1.3021124171160636 0 2.3979400086720375 0 0.8494850021680094 0.2742275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}ENRV{I|L};{M(Oxidation (M))|F}PD{I|L}ENRV{I|L};{M(Oxidation (M))|F}PD{I|L}EGGRV{I|L} 4.9984;4.8802;4.0442 +;+;- + 348 NaN NaN 143797.9 NaN 7412 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9958 48.833 NaN 286910 35 0 26528 0.261 + 27784 TAVKELEAL 9 63 487.2803321721241 972.5461114110482 2 487.28173828125 MULTI HCD FTMS 0 0 0 9953 139141.53125 0.9967205254143611 -1 0.031764984130859375 5 Unmodified _TAVKELEAL_ ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;ENSG00000111271|ENST00000313698|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENST00000507135.5_1_12:112130513-112159479:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;nc|ENSG00000111271|Q6JQN1-4|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 40.23920728925047 0.06424668180817725 1 [TA]VK{[QN]|[E{I|L}]|[KN]}EA{I|L} 9 0 + 59.9 0 0 6.1591 6.1591 84.616 0 0 0 19.584296476126326 2.95371572735597 2.95371572735597 2.95371572735597 0 2.1989700043360187 1.6989700043360187 0.3807196863200844 0 + + [TA]VK{[QN]|[E{I|L}]|[KN]}EA{I|L};[TA]VK{[QN]|[E{I|L}]|[KN]}AE{I|L};[TA]VV[WR]E{I|L};[TA]VV[MT]V[RP];{[QN]|[E{I|L}]|[KN]}K[W{I|L}]TA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[W{I|L}]TA{I|L};{[QN]|[E{I|L}]|[KN]}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KV[PG];{[QN]|[E{I|L}]|[KN]}K[MT]VV[PG];{[QN]|[E{I|L}]|[KN]}K[MT][PA]A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[MT]VV[PG] 6.1591;5.8553;4.6751;3.4527;2.7853;2.2259;2.1425;2.1425;1.7058;1.5831 +;-;-;-;-;-;-;-;-;- + 174 + NaN NaN 134840.4 NaN 7413 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9959 48.837 NaN 238800 35 0 23659 0.261 + 23563 RPDPNFDAL 9 59 522.759079663837 1043.503606394474 2 522.7592163085938 MULTI HCD FTMS 0 0 0 9953 72324.53125 0.4966303847751673 7 -0.203887939453125 6 Unmodified _RPDPNFDAL_ ENSG00000121481|ENST00000367510|RNF2;ENSG00000204227|ENST00000374656|RING1;nc|ENSG00000204227|Q06587-2|RING1 19.361941925380144 0.1930734562688509 1 [RP]DNP{M(Oxidation (M))|F}DA{I|L} 9 2 + 34.548 0 0 3.3108 3.3108 87.807 0 0 0 3.2568864632742915 17.558349987821423 3.2568864632742915 26.365458656182245 0 0.7742275032520141 0 0 0.3494850021680094 [RP]DNP{M(Oxidation (M))|F}DA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QQV[HD]A{I|L} 3.3108;0.78415 -;- 97 NaN NaN 118473.7 NaN 7414 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9960 48.84 NaN 159260 35 0 20143 0.261 + 16352 LRTTTPAF 8 63 453.7556604147097 905.4967678962195 2 453.75555419921875 MULTI HCD FTMS 0 0 0 9953 26619.5234375 0.4793738213672506 4 -0.11507415771484375 7 Unmodified _LRTTTPAF_ ENSG00000120440|ENST00000239587|TTLL2;TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant 8.593279151180031 0.5292430274356741 1 {I|L}P 2 6 19.464 0 0 2.1495 0 0 0 692.3361300104124 692.3361300104124 -1.5051499783199063 0 -1.5051499783199063 0 0 0 0 0 0 {I|L}P 2.1495 - 15 + NaN NaN 120359.7 NaN 7415 2543 9953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9962 48.845 NaN 5727400 35 0 849920 0.327 + 4781 EYVEKFYRI 9 87 416.22019191672985 1245.6387463503895 3 416.2206115722656 MULTI HCD FTMS 0 0 0 9961 2520505 0.9654534586664741 1 -0.0296630859375 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 35.61225514009592 0.08548698421724198 1 EYVEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 65.831 0 0 5.2849 5.2849 89.224 0 0 0 29.952359395051715 13.46787486224656 13.46787486224656 16.237577350063788 0 0.2742275032520141 0 1.1307196863200843 0 + + EYVEK{M(Oxidation (M))|F}YR{I|L};EYVEK{I|L}RY{M(Oxidation (M))|F};EYVE{I|L}KRY{M(Oxidation (M))|F} 5.2849;3.9813;3.6619 +;-;- + 572 + NaN NaN 756780.2 NaN 7416 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9963 48.849 NaN 1412300 35 0 79739 0.261 + 34241 YPDRIMNTF 9 105 586.7737018509798 1171.5328507687595 2 586.774169921875 MULTI HCD FTMS 0 0 0 9961 806153 0.20133509031043362 21 -0.5956878662109375 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 179.28349886687624 1.1259799814826369E-12 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 117.99 0 0 10.072 10.072 95.524 0 0 0 73.4797937975788 13.46787486224656 13.46787486224656 12.460762528683702 0 2.9291746928241125 1.6989700043360187 2.289816691347048 0.8494850021680094 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 10.072;9.0082;7.9651;7.5061;7.4617;7.1791;6.7774;6.6757;6.6599;6.0949 +;-;+;-;-;-;-;-;-;- + 9958 + NaN NaN 302791.1 NaN 7417 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9964 48.853 NaN 1652400 35 0 457640 0.264 + 29793 VEHYKKAPIF 10 83 411.2325342392604 1230.6757733179813 3 411.2326354980469 MULTI HCD FTMS 0 0 0 9961 443052.75 1 0 0 3 Unmodified _VEHYKKAPIF_ ENSG00000071051|ENST00000233154|NCK2;ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1 14.218169984304629 0.37812005199054677 1 KEP{I|L}{M(Oxidation (M))|F} 5 6 51.37 0 0 4.1741 0 0 598.3292713849625 0 598.3292713849625 0 36.131134461430534 0 0 0 0.8807196863200843 0 0.8494850021680094 0 KEP{I|L}{M(Oxidation (M))|F} 4.1741 - 432 NaN NaN 328740.1 NaN 7418 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9965 48.856 NaN 172870 35 0 21283 0.261 -1 KYLEMIYSM 9 47 605.2806176118941 1208.546682290588 2 605.2803955078125 MULTI HCD FTMS 0 0 0 9961 72492.0859375 0.7978784263397416 3 -0.08882522583007812 4 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 1 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 58.053 0 0 4.8035 0 0 404.24339492011876 0 404.24339492011876 0 48.58857830256703 0 0 0 2.2302046884880937 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.8035 + + 74 NaN NaN 120658 NaN 7419 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9966 48.86 NaN 259830 35 0 21075 0.264 + 3823 EPFEREIINN 10 66 420.8798809217435 1259.6178133654305 3 421.21368408203125 MULTI HCD FTMS 0 0 0 9961 47399.99609375 0.6560875886519071 1 -0.0296630859375 5 Unmodified _EPFEREIINN_ tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1 5.783430956126388 0.4446910851847804 1 Y[YR]{M(Oxidation (M))|F}KEV 7 9 24.825 0 0 1.9709 0 0 0 271.0722750299438 271.0722750299438 7.835551017543523 0 0 0 0 0 0 0 0 Y[YR]{M(Oxidation (M))|F}KEV 1.9709 - 87 + NaN NaN 136292.4 NaN 7420 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9967 48.863 NaN 467700 35 0 51941 0.261 + 165 AEKLITQTF 9 71 525.795343170263 1049.5761334073259 2 525.7958374023438 MULTI HCD FTMS 0 0 0 9961 103855.390625 0.553571070150481 -3 0.08773040771484375 6 Unmodified _AEKLITQTF_ ENSG00000090273|ENST00000321265|NUDC 92.20098385977256 0.0044682926920227755 1 {[CP]|[EA]}K{I|L}{I|L}TQT{M(Oxidation (M))|F} 9 0 + 81.204 0 0 7.7368 7.7368 91.028 0 0 0 3.1234684152074976 7.40270483492408 3.1234684152074976 9.208187539523749 0 2.912437995416459 0 1.1936726795685342 0 + + {[CP]|[EA]}K{I|L}{I|L}TQT{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}{I|L}T[AG]T{M(Oxidation (M))|F};[QT]V{I|L}{I|L}TQT{M(Oxidation (M))|F};[QT]V{I|L}{I|L}T[AG]T{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}{I|L}D[KS]{M(Oxidation (M))|F};[QT]V{I|L}{I|L}D[KS]{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}[KT][DV]{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}D{I|L}[KS]{M(Oxidation (M))|F};[QT]V{I|L}D{I|L}[KS]{M(Oxidation (M))|F};{[CP]|[EA]}K[KT]{I|L}[DV]{M(Oxidation (M))|F} 7.7368;6.8595;6.7623;5.885;4.7573;4.4881;3.6719;3.6149;3.3457;2.6335 +;-;-;-;-;-;-;-;-;- + 434 + NaN NaN 170350.8 NaN 7421 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9968 48.866 NaN 229730 35 0 17609 0.261 + 21720 QADPTKLEL 9 68 507.7766832843215 NaN 0 507.7772521972656 PEAK HCD FTMS 0 0 0 9961 74676.25 0.280724194270672 -5 0.14723587036132812 7 Unmodified _QADPTKLEL_ ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF;ENST00000523219.1_1_5:159833399-159834623:-|nuORF 66.45667989310934 0.013251654575578966 1 D 1 8 13.13 0 0 1.2954 0 0 199.09331722948258 696.393720804508 895.4870380339905 0 0 0 0 0 0.6139829889124311 0 0 0 + D 1.2954 + + 22 + NaN NaN 115493.6 NaN 7422 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9969 48.87 NaN 86359 35 0 9364.7 0.261 -1 TCTRGCRF 8 46 529.2352017085509 1056.4558504839017 2 529.234375 MULTI HCD FTMS 0 0 0 9961 19577.021484375 0.4894972408067588 1 -0.0296630859375 8 2 Carbamidomethyl (C) _TC(Carbamidomethyl (C))TRGC(Carbamidomethyl (C))RF_ ENSG00000121897|ENST00000640888|LIAS;nc|ENSG00000121897|O43766-2|LIAS;nc|ENSG00000121897|O43766-3|LIAS 2.302733041254933 0.5385759549224092 1 {I|L}AEC(Carbamidomethyl (C))[MD]{M(Oxidation (M))|F} 7 -1 13.689 0 0 1.2958 0 0 172.11699657940795 0 172.11699657940795 0 9.709632066668021 0 0 0 0 0 0 0 {I|L}AEC(Carbamidomethyl (C))[MD]{M(Oxidation (M))|F} 1.2958 - 25 + NaN NaN 98278.6 NaN 7423 2544 9961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9971 48.875 NaN 852250 35 0 94094 0.327 + 4776 EYVEKFYRI 9 92 623.8270445852378 1245.6395362372755 2 623.8270874023438 MULTI HCD FTMS 0 0 0 9970 473381.40625 0.9794904662299885 2 -0.059162139892578125 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 118.20947048124657 0.0016021842648852112 1 EYVEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 102.64 0 0 8.2402 8.2402 93.2 0 0 0 65.21529987308661 10.400217704352457 10.400217704352457 11.346434334517141 0 2.353917193908117 2 0.4247425010840047 1.024227503252014 + + EYVEK{M(Oxidation (M))|F}YR{I|L};EYVEK{M(Oxidation (M))|F}{I|L}[YR];EYVEK{I|L}{M(Oxidation (M))|F}[YR];EYV{I|L}[SG]{M(Oxidation (M))|F}YR{I|L};{I|L}DYEK{M(Oxidation (M))|F}YR{I|L};EYV{I|L}[SG]{M(Oxidation (M))|F}{I|L}[YR];EYV{I|L}[YQ]YR{I|L};{I|L}DYEK{M(Oxidation (M))|F}{I|L}[YR];EYV{I|L}[SG]{I|L}{M(Oxidation (M))|F}[YR];EYV{I|L}[YQ]{I|L}[YR] 8.2402;7.3293;6.5654;6.519;5.8681;5.6081;5.3925;4.9572;4.8442;4.4816 +;-;-;-;-;-;-;-;-;- + 946 + NaN NaN 218328.5 NaN 7424 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9972 48.879 NaN 200410 35 0 26507 0.261 + 34348 YPEGFEIHSM 10 48 613.2634398604836 1224.512326787767 2 613.2634887695312 MULTI HCD FTMS 0 0 0 9970 108337.609375 0.32036478559893916 7 -0.20066452026367188 2 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 134.295615338601 1.1116339284287773E-05 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 115.63 0 0 9.4431 9.4431 96.822 0 0 0 94.54008347803827 16.310807844809844 16.310807844809844 23.79493455131808 0 2.278659694992122 1.6989700043360187 2.249134866972623 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPEGYM[HS]{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EPEYGHS{M(Oxidation (M))|F};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPE[YT][YR]S{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}EPE{[QN]|[E{I|L}]|[KN]} 9.4431;7.4999;6.3069;5.3022;5.284;5.2356;5.0912;5.0251;4.9546;4.6877 +;-;-;-;-;-;-;-;-;- + 936 + NaN NaN 127746.3 NaN 7425 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9973 48.883 NaN 211500 35 0 16179 0.261 + 34748 YPYEHSYGL 9 65 564.7534599462454 1127.4923669592906 2 564.753662109375 MULTI HCD FTMS 0 0 0 9970 124757.046875 1 0 0 3 Unmodified _YPYEHSYGL_ ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2 85.35673624503755 0.00464763827098139 1 SYG{I|L} 4 5 44.967 0 0 3.9882 0 0 689.2817496784523 0 689.2817496784523 0 2.008272069161734 0 0 0 1.1989700043360187 0 0.7059771852360797 0 + SYG{I|L} 3.9882 + + 90 NaN NaN 117951.2 NaN 7426 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9974 48.886 NaN 190600 35 0 16814 0.261 + 6201 FPENFHQNL 9 58 573.2722932653356 1144.5300335974712 2 573.272705078125 MULTI HCD FTMS 0 0 0 9970 104287.4765625 0.8725560509273524 -1 0.0296630859375 4 Unmodified _FPENFHQNL_ ENSG00000110442|ENST00000263401|COMMD9;ENST00000526789.1_1_11:36300025-36310962:-|nuORF;ENST00000528608.5_1_11:36298627-36310962:-|nuORF;nc|ENSG00000110442|Q9P000-2|COMMD9 51.629811660486645 0.02929079705179888 1 {I|L}MQ{[{M(Oxidation (M))|F}D]|MM}HQ{[QV]|[N{I|L}]|[RA]|[KV]} 9 4 + 51.181 0 0 4.4718 4.4718 85.388 0 0 0 39.498643667695745 4.762036441594191 4.762036441594191 9.208187539523749 0 1.274227503252014 2 0 1.0356668758921828 {I|L}MQ{[{M(Oxidation (M))|F}D]|MM}HQ{[QV]|[N{I|L}]|[RA]|[KV]};{I|L}MQ{[{M(Oxidation (M))|F}D]|MM}H[AG]{[QV]|[N{I|L}]|[RA]|[KV]};{I|L}M[AG]{[{M(Oxidation (M))|F}D]|MM}HQ{[QV]|[N{I|L}]|[RA]|[KV]};{M(Oxidation (M))|F}PQ{[{M(Oxidation (M))|F}D]|MM}HQ{[QV]|[N{I|L}]|[RA]|[KV]};{M(Oxidation (M))|F}PQ{[{M(Oxidation (M))|F}D]|MM}H[AG]{[QV]|[N{I|L}]|[RA]|[KV]};{M(Oxidation (M))|F}P[AG]{[{M(Oxidation (M))|F}D]|MM}HQ{[QV]|[N{I|L}]|[RA]|[KV]};{M(Oxidation (M))|F}PQ[EP][WD]{[QV]|[N{I|L}]|[RA]|[KV]};{[QD]|[EN]|[WG]|[KD]|[RS]}[R{M(Oxidation (M))|F}][EP]QPE 4.4718;3.6673;3.6673;3.2231;2.4186;2.4186;1.7514;1.0515 -;-;-;-;-;-;-;- 107 + NaN NaN 123256.5 NaN 7427 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9975 48.889 NaN 597170 35 0 33748 0.261 + 24189 RYFIAPAKF 9 88 556.8159280998988 1111.6173032665974 2 556.8159790039062 MULTI HCD FTMS 0 0 0 9970 60108.03515625 0.5461234380053032 3 -0.08545303344726562 5 Unmodified _RYFIAPAKF_ ENSG00000135862|ENST00000258341|LAMC1 19.256988751693697 0.19398022840297344 1 SY{I|L}N{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 8 5 23.855 0 0 2.1459 0 0 166.1927254882226 0 166.1927254882226 0 13.564053678801493 0 0 0 0.3054621874040891 0 0.4247425010840047 0 SY{I|L}N{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 2.1459 - 1055 + NaN NaN 169118.5 NaN 7428 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9976 48.893 NaN 160240 35 0 12068 0.261 + 34934 YSLLMPLEL 9 56 539.7973659217745 1077.5801789103489 2 539.7985229492188 MULTI HCD FTMS 0 0 0 9970 42333.5390625 0.05127670230127813 16 -0.4575347900390625 6 Unmodified _YSLLMPLEL_ REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF;REV__nc|ENSG00000101974|Q8NB49-3|ATP11C 15.847184025352803 0.2234401846867398 1 E{I|L} 2 -1 24.776 0 0 2.2993 0 0 817.4462767410037 0 817.4462767410037 0 7.073259432077563 0 0 0 0.3807196863200844 0 0 0 E{I|L} 2.2993 + + 102 NaN NaN 109214.9 NaN 7429 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9977 48.896 NaN 95317 35 0 12540 0.261 -1 LPYAGDVSM 9 46 484.72304612376973 967.4315393143395 2 484.72265625 MULTI HCD FTMS 0 0 0 9970 32625.1015625 0.6099418161720545 -3 0.087677001953125 7 Oxidation (M) _LPYAGDVSM(Oxidation (M))_ ENSG00000197632|ENST00000299502|SERPINB2 37.97399986684836 0.07464525285885698 1 {I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}GVS{M(Oxidation (M))|F} 9 -1 + 53.35 0 0 5.5146 5.5146 85.972 0 0 0 48.74606867853579 7.904849854573683 7.904849854573683 8.46787486224656 0 1.5 0 0.4247425010840047 0 {I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}GVS{M(Oxidation (M))|F};[HD]V[HA]RS{M(Oxidation (M))|F} 5.5146;4.6393 -;- 113 + NaN NaN 102586.6 NaN 7430 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9978 48.899 NaN 106720 35 0 6323.9 0.261 + 7124 FRYKVPAEI 9 64 561.8212326354909 1121.6279123377817 2 561.8184814453125 MULTI HCD FTMS 0 0 0 9970 35490.5390625 0.04030227846645857 34 -0.9670066833496094 8 Unmodified _FRYKVPAEI_ ENSG00000138760|ENST00000264896|SCARB2;nc|ENSG00000138760|Q14108-2|SCARB2 8.745405648335112 0.2847203663274469 1 E{I|L} 2 7 20.969 0 0 1.8695 0 0 861.4792061294428 0 861.4792061294428 0 12.870156338638594 0 0 0 0 0 0 0 + E{I|L} 1.8695 + + 43 NaN NaN 106633.1 NaN 7431 2545 9970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9980 48.904 NaN 2234100 35 0 184700 0.327 + 1344 AYPHNLMTF 9 92 555.2577483138126 1108.5009436944251 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9979 1326952.75 0.9224940936463911 -1 0.029567718505859375 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 168.65858592105317 4.556178112754322E-09 1 AYPHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 118.12 0 0 10.656 10.656 93.174 0 0 0 45.97418457616534 14.973024840566467 14.973024840566467 8.987060099015793 0 3.2614393726401687 2 2.548455006504028 0 + + AYPHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};AYPHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}SPHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}SPHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};AYPH[TA]MAT{M(Oxidation (M))|F};{M(Oxidation (M))|F}H[PS]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}HE{I|L}NMAT{M(Oxidation (M))|F} 10.656;9.845;9.8251;9.39;8.5593;8.4735;7.2733;6.9252;6.6021;6.5727 +;+;-;-;-;-;-;-;-;- + 5532 + NaN NaN 433079.9 NaN 7432 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9981 48.909 NaN 976710 35 0 339450 0.261 + 8535 HAIEESVVL 9 55 498.77171872557665 995.5288845179533 2 498.77178955078125 MULTI HCD FTMS 0 0 0 9979 522511.8125 0.6667756400143753 2 -0.05588531494140625 2 Unmodified _HAIEESVVL_ ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF 20.453626601364224 0.18364154288633264 1 SVV{I|L} 4 5 36.019 0 0 3.618 0 0 579.265916892775 0 579.265916892775 0 36.01850649356642 0 0 0 0.7742275032520141 0 0.3494850021680094 0 + SVV{I|L} 3.618 + + 10 NaN NaN 241475.8 NaN 7433 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9982 48.912 NaN 295150 35 0 24763 0.261 + 12895 KYGALVNNF 9 62 513.2742559732488 1024.5339590132976 2 513.2744140625 MULTI HCD FTMS 0 0 0 9979 134353.46875 0.5089415231912101 4 -0.118408203125 3 Unmodified _KYGALVNNF_ ENSG00000117481|ENST00000474844|NSUN4;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;ENST00000495427.1_2_1:46810505-46812688:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant 71.92227651296345 0.008466197542043549 1 [YK]Q{I|L}VNN{M(Oxidation (M))|F} 8 2 + 73.977 0 0 7.2206 7.2206 90.958 0 0 0 2.8566687589218276 2.8566687589218276 2.8566687589218276 9.262137858390815 0 2.8494850021680094 0 0 1.0356668758921828 [YK]Q{I|L}VNN{M(Oxidation (M))|F};[YK][AG]{I|L}VNN{M(Oxidation (M))|F};[YK]Q{I|L}VGGN{M(Oxidation (M))|F};[YK]Q{I|L}VNGG{M(Oxidation (M))|F};[YK][AG]{I|L}VGGN{M(Oxidation (M))|F};[YK]Q{I|L}VGGGG{M(Oxidation (M))|F};[YK][AG]{I|L}VNGG{M(Oxidation (M))|F};[YK]Q{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AQ;[YK]QP[KT]N{M(Oxidation (M))|F};[YK][AG]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AQ 7.2206;6.3165;6.3165;6.0377;5.4178;5.139;5.139;3.7988;3.5268;2.8947 -;+;-;-;-;-;-;-;-;- + 557 + NaN NaN 124033.8 NaN 7434 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9983 48.915 NaN 260620 35 0 36124 0.261 -1 EPNPDDPLM 9 62 522.2210675061094 1042.4275820790187 2 522.2213134765625 MULTI HCD FTMS 0 0 0 9979 108237.546875 0.3763850640525904 -12 0.34510040283203125 4 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 36.12702656103203 0.08312389501731911 1 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 34.253 0 0 3.2858 0 0 552.2173329084 0 552.2173329084 0 17.26280941356464 0 0 0 1.3494850021680094 0 0.805462187404089 0 D[{I|L}P]{M(Oxidation (M))|F} 3.2858 + + 60 NaN NaN 126783.5 NaN 7435 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9984 48.919 NaN 264150 35 0 50146 0.261 + 28214 TLDPVEKAL 9 51 493.28184364074605 984.5491343482921 2 493.2820739746094 MULTI HCD FTMS 0 0 0 9979 109542.53125 0.5204395501935264 -4 0.11724472045898438 5 Unmodified _TLDPVEKAL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;nc|ENSG00000109971|P11142-2|HSPA8 59.368380827593164 0.01846506874148156 1 [{I|L}T]DPVEKA{I|L} 9 0 [{I|L}T] + + 47.708 23.724 11.079 4.8456 4.8456 61.333 0 0 0 0 28.66660094933607 0 0 0 2.1237125054200234 0 0.6505149978319906 0 + + [{I|L}T]DPVEKA{I|L} 4.8456 + + 67 + NaN NaN 112595 NaN 7436 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9985 48.922 NaN 251740 35 0 23084 0.261 -1 PALAMGLCVAM 11 87 546.767769163676 NaN 0 546.75732421875 PEAK HCD FTMS 0 0 0 9979 10387.68359375 0.5083164818209153 2 -0.05588531494140625 6 Oxidation (M) _PALAMGLCVAM(Oxidation (M))_ ENST00000392495.7_1_12:121202804-121206971:-|nuORF 15.847184025352803 0.28876306271177554 1 TV{[{M(Oxidation (M))|F}D]|MM}GRA 7 -1 17.98 0 0 1.6473 0 0 64.01841266893219 278.15070520572505 342.1691178746572 0 0 0 0 0 0.6861818737241735 0 0.3494850021680094 0 TV{[{M(Oxidation (M))|F}D]|MM}GRA 1.6473 - 210 + NaN NaN 127563.7 NaN 7437 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9986 48.925 NaN 113990 35 0 20700 0.262 + 31902 VYNNIMRHYL 10 47 441.5605153818408 1321.6597167457223 3 441.8955993652344 MULTI HCD FTMS 0 0 0 9979 21432.6875 0.07783441900412445 17 -0.48053741455078125 7 Unmodified _VYNNIMRHYL_ ENSG00000115267|ENST00000649979|IFIH1 6.1918466704503565 0.44252927588099017 1 VY 2 8 45.217 0 0 3.4212 0 0 0 1056.5045633152483 1056.5045633152483 40.612431371158735 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.4212 + + 11 + NaN NaN 100804.6 NaN 7438 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9987 48.929 NaN 78885 35 0 7607.8 0.261 -1 YWMHVQNTF 9 40 621.2743008855266 1240.534048837853 2 621.2745361328125 MULTI HCD FTMS 0 0 0 9979 52897.33984375 0.20610753027402245 12 -0.33565521240234375 8 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 10.823927491677226 0.26684000660059787 1 QNT{M(Oxidation (M))|F} 4 -1 36.186 0 0 2.9169 0 0 732.3052235334 0 732.3052235334 0 30.49926291259105 0 0 0 0 0 0 0.4247425010840047 QNT{M(Oxidation (M))|F} 2.9169 + + 28 NaN NaN 97924.2 NaN 7439 2546 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9989 48.934 NaN 1420100 35 0 111310 0.327 + 13031 KYITQGQLL 9 109 532.3093632397658 1062.6041735463316 2 532.3112182617188 MULTI HCD FTMS 0 0 0 9988 727047.6875 1 0 0 1 Unmodified _KYITQGQLL_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 121.5340881639634 0.001118397630175091 1 [Y{I|L}]KTQGQ{I|L}{I|L} 9 2 + 77.147 0 0 7.2602 7.2602 86.708 0 0 0 2.9833247972062793 16.47817481888638 2.9833247972062793 2.9833247972062793 0 1.6989700043360187 1.0457574905606752 0.5138793319624578 0.9947026752325154 [Y{I|L}]KTQGQ{I|L}{I|L};[YK]{I|L}TQGQ{I|L}{I|L};[K{I|L}]YTQGQ{I|L}{I|L};[Y{I|L}]KT[AG]GQ{I|L}{I|L};[Y{I|L}]KTQG[AG]{I|L}{I|L};[YK]{I|L}T[AG]GQ{I|L}{I|L};[YK]{I|L}TQG[AG]{I|L}{I|L};[Y{I|L}]TKQGQ{I|L}{I|L};[K{I|L}]YT[AG]GQ{I|L}{I|L};[K{I|L}]YTQG[AG]{I|L}{I|L} 7.2602;6.9795;6.4218;6.3936;6.3936;6.1129;6.1129;5.8096;5.5553;5.5553 -;+;-;-;-;-;-;-;-;- + 1816 NaN NaN 305535.5 NaN 7440 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9990 48.938 NaN 173070 35 0 36412 0.261 + 34833 YRLCDSFGEL 10 41 601.7790637740396 1201.5435746148792 2 601.7791748046875 MULTI HCD FTMS 0 0 0 9988 86758.46875 0.27255282060706587 -18 0.5211410522460938 2 Unmodified _YRLCDSFGEL_ REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF 17.11289562659939 0.35104376501799556 1 MANVE{I|L} 6 -1 55.394 0 0 4.6102 0 0 526.2204457013687 0 526.2204457013687 0 50.789719040763046 0 0 0 0.4247425010840047 0 0 0.8494850021680094 MANVE{I|L} 4.6102 - 155 NaN NaN 110883.2 NaN 7441 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9991 48.942 NaN 159190 35 0 14882 0.261 + 9776 HYKPTPLYF 9 61 583.3056984234008 1164.5968439136016 2 583.3057861328125 MULTI HCD FTMS 0 0 0 9988 55597.35546875 0.050839328165413075 45 -1.2627067565917969 3 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 53.832793166522166 0.026208976789938845 1 HYK[TP][{I|L}P]Y{M(Oxidation (M))|F} 9 0 + 46.105 0 0 3.9589 3.9589 89.375 0 0 0 20.13559966262001 7.700587025535839 7.700587025535839 46.10469979270057 0 1.774227503252014 1.6989700043360187 0 0 + + HYK[TP][{I|L}P]Y{M(Oxidation (M))|F} 3.9589 + + 68 + NaN NaN 114841.4 NaN 7442 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9992 48.945 NaN 274300 35 0 36891 0.263 + 13028 KYITKSFNFY 10 63 437.5638773637588 1309.6698026914764 3 437.8984375 MULTI HCD FTMS 0 0 0 9988 45531.8984375 0.6116959469423248 3 -0.08881378173828125 4 Unmodified _KYITKSFNFY_ ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF;nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 7.945399516374404 0.4332474418965133 1 Y 1 9 21.99 0 0 1.679 0 0 1128.5959634354201 0 1128.5959634354201 0 7.385606273598313 0 0 0 0.5 0 0 0 + Y 1.679 + + 39 + NaN NaN 128880.4 NaN 7443 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9993 48.948 NaN 93588 35 0 10858 0.261 + 18750 NAAFATVAAI 10 37 474.7611712386832 947.5077895441664 2 474.7611389160156 MULTI HCD FTMS 0 0 0 9988 53446.65625 0.058134214139000315 14 -0.3983726501464844 5 Unmodified _NAAFATVAAI_ REV__ENSG00000138356|ENST00000374700|AOX1 18.373094154950223 0.33925629317698053 1 A{M(Oxidation (M))|F}[WR]A{I|L} 6 -1 31.955 0 0 3.3725 0 0 185.07997328925939 0 185.07997328925939 0 26.470544657224835 0 0 0 1.5 0 0 0 A{M(Oxidation (M))|F}[WR]A{I|L} 3.3725 - 41 NaN NaN 104986.3 NaN 7444 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9994 48.952 NaN 280250 35 0 36099 0.261 + 16747 LYDAELSQM 9 60 543.2447072873407 1084.4748616414813 2 543.2450561523438 MULTI HCD FTMS 0 0 0 9988 114979 1 0 0 6 Oxidation (M) _LYDAELSQM(Oxidation (M))_ CON__P02538;CON__P04259;CON__P12035;CON__P19013;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000170477|ENST00000551956|KRT4;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 55.50274090549119 0.023872834264864425 1 {I|L}A{M(Oxidation (M))|F}E{I|L}SQ{M(Oxidation (M))|F} 8 3 66.936 0 0 6.1722 0 0 131.02751204178793 0 131.02751204178793 0 59.94640679708773 0 0 0 2.2614393726401687 0 0 0.4247425010840047 {I|L}A{M(Oxidation (M))|F}E{I|L}SQ{M(Oxidation (M))|F} 6.1722 - 101 + NaN NaN 125375 NaN 7445 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9995 48.955 NaN 87178 35 0 7366.1 0.261 + 10642 IPTVAATALS 10 44 472.27653176128445 942.5385105893689 2 472.2760925292969 MULTI HCD FTMS 0 0 0 9988 35326.3671875 0.018489560639355515 31 -0.8715476989746094 7 Unmodified _IPTVAATALS_ HTR2C|p.R400T|1|0.36|ENSG00000147246|chrX:114907237-114907237|G/C|missense_variant 6.2057823575117 0.44245551207394906 1 S{I|L} 2 9 10.802 0 0 1.1461 0 0 724.4103871076187 0 724.4103871076187 0 6.197887582883938 0 0 0 0 0 0 0 S{I|L} 1.1461 - 3 NaN NaN 102479.8 NaN 7446 2547 9988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9997 48.96 NaN 1416900 35 0 139940 0.327 + 12948 KYIDQKFVL 9 99 577.3344707949477 1152.6543886566953 2 577.33447265625 MULTI HCD FTMS 0 0 0 9996 955438.125 0.7634606865698029 1 -0.029621124267578125 1 Unmodified _KYIDQKFVL_ ENSG00000078304|ENST00000694906|PPP2R5C;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E 160.6895995991744 8.89223804155775E-09 1 [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L} 9 0 + 104.19 0 0 9.0389 9.0389 93.011 0 0 0 11.439389643433628 67.93010335288963 11.439389643433628 9.208187539523749 0 2.3481362441963327 0 1.201163485412895 1.8851518780601924 + + [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]K{M(Oxidation (M))|F}V{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}KV{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}KV{I|L};[YK]{I|L}DQKV{M(Oxidation (M))|F}{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}VK{I|L};[YK]{I|L}D[AG]KV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}VK{I|L};KY{I|L}DQK{M(Oxidation (M))|F}V{I|L} 9.0389;8.2401;8.116;7.3171;7.187;7.0132;6.3881;6.2293;6.2143;6.0478 +;-;-;-;-;-;-;-;-;+ + 2607 NaN NaN 307503.8 NaN 7447 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9998 48.964 NaN 299210 35 0 90891 0.261 + -1 EGTPSCEGDII 11 60 589.2554832117141 1176.4964134902282 2 589.2560424804688 MULTI HCD FTMS 0 0 0 9996 117060 0.22890779805183448 15 -0.424652099609375 2 Carbamidomethyl (C) _EGTPSC(Carbamidomethyl (C))EGDII_ REV__ENST00000556258.1_1_14:100607517-100608273:+|nuORF 8.745405648335112 0.3805662881914433 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 48.047 0 0 4.0839 0 0 656.2409535138687 0 656.2409535138687 0 45.828956512079344 0 0 0 1.2302046884880937 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 4.0839 - 31 NaN NaN 125235.1 NaN 7448 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 9999 48.968 NaN 492240 35 0 29007 0.261 + 24545 RYLGKVLEL 9 87 545.8346483520276 1089.654743770855 2 545.8346557617188 MULTI HCD FTMS 0 0 0 9996 200190.40625 0.4831749184720158 -4 0.11511611938476562 3 Unmodified _RYLGKVLEL_ ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF;nc|ENSG00000132361|O75153|CLUH 43.77239144664712 0.04802738721622131 1 [YR]{I|L}GKV{I|L}E{I|L} 9 0 + 54.86 0 0 5.0347 5.0347 83.925 0 0 0 3.4856739160776584 28.918271902055324 3.4856739160776584 5.3246091534035145 0 0.805462187404089 0 0.3494850021680094 0 + + [YR]{I|L}GKV{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}{I|L}QS{I|L}TR{I|L};[YR]{I|L}GKVE{I|L}{I|L};[VP][HV]GKV{I|L}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVGKV{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}{I|L}[AG]S{I|L}TR{I|L};[YR]{I|L}GKEV{I|L}{I|L};[VP][HV]GKVE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RV]KV{I|L}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVGKVE{I|L}{I|L} 5.0347;4.546;4.3609;4.1896;3.9546;3.701;3.6468;3.5159;3.3551;3.2808 +;-;-;-;-;-;-;-;-;- + 1394 NaN NaN 151941.2 NaN 7449 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10000 48.971 NaN 382720 35 0 33200 0.261 + 2662 DVFVVGTER 9 67 511.2692358614238 1020.5239187896476 2 511.2691345214844 MULTI HCD FTMS 0 0 0 9996 110134.203125 0.7609037200419196 1 -0.029621124267578125 4 Unmodified _DVFVVGTER_ ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000263001|ENST00000573035|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I 71.70789743142352 0.008535567138151097 1 [DV]{M(Oxidation (M))|F}VVGT{[RE]|[WV]} 9 0 + 90.389 0 0 8.8571 8.8571 96.503 0 0 0 67.68598309729809 5.865743447727638 5.865743447727638 27.346120605640237 0 2.504432191740108 2 0.9749073637206092 0.2742275032520141 + + [DV]{M(Oxidation (M))|F}VVGT{[RE]|[WV]};[DV]{M(Oxidation (M))|F}VRTA[DV];[DV]{M(Oxidation (M))|F}VVET{[NV]|[RG]};[{M(Oxidation (M))|F}V]DVVGT{[RE]|[WV]};[{M(Oxidation (M))|F}V]GTRVE[DV];[DV]{M(Oxidation (M))|F}[KA]SAA{[NV]|[RG]};[DV]{M(Oxidation (M))|F}[KA]G[TA]{[NV]|[RG]};[DV]{M(Oxidation (M))|F}[KA]QT{[NV]|[RG]};[{M(Oxidation (M))|F}V]DVRTA[DV];[{M(Oxidation (M))|F}V]GTGVSAA{[NV]|[RG]} 8.8571;6.1775;4.9259;4.2177;4.2052;4.1227;3.9666;3.7091;3.5552;3.444 +;-;-;-;-;-;-;-;-;- + 1621 + NaN NaN 149066.3 NaN 7450 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10001 48.975 NaN 131910 35 0 26071 0.261 + 14101 KYYRQTLLF 9 41 616.3455972069337 1230.6766414806673 2 616.3452758789062 MULTI HCD FTMS 0 0 0 9996 84351.4609375 0.6190249287836675 3 -0.08553695678710938 5 Unmodified _KYYRQTLLF_ ENSG00000117597|ENST00000491415|UTP25 14.957161354070239 0.23112978309247678 1 K[SG]{I|L}{I|L}{M(Oxidation (M))|F} 6 5 32.937 0 0 2.6763 0 0 567.2697621076187 0 567.2697621076187 0 11.967809330011434 0 0 0 0.5 0 0.3807196863200844 0.3494850021680094 K[SG]{I|L}{I|L}{M(Oxidation (M))|F} 2.6763 - 33 NaN NaN 111886.5 NaN 7451 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10002 48.978 NaN 82706 35 0 7074.4 0.261 + 3646 ELIQDITQR 9 43 558.3060230718924 1114.5974932105846 2 558.3065185546875 MULTI HCD FTMS 0 0 0 9996 29461.921875 0.3725108615737214 3 -0.08553695678710938 6 Unmodified _ELIQDITQR_ ENSG00000147065|ENST00000360270|MSN 14.405379775768559 0.2358970535022398 1 {[QN]|[E{I|L}]|[KN]}{I|L}Q{NN|[MP]|[D{I|L}]|[EV]}TQR 9 0 + 39.103 0 0 3.5082 3.5082 84.916 0 0 0 22.11303739409744 14.092568545288067 14.092568545288067 9.208187539523756 0 0.5 0 0 0 + + {[QN]|[E{I|L}]|[KN]}{I|L}Q{NN|[MP]|[D{I|L}]|[EV]}TQR;{[QN]|[E{I|L}]|[KN]}{I|L}Q{NN|[MP]|[D{I|L}]|[EV]}T[AG]R;{[QN]|[E{I|L}]|[KN]}{I|L}[AG]{NN|[MP]|[D{I|L}]|[EV]}TQR 3.5082;2.6821;2.6821 +;-;- + 63 + NaN NaN 98447.3 NaN 7452 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10003 48.981 NaN 96694 35 0 6981.2 0.261 + 16471 LSTNLPVSL 9 42 472.27653176128445 942.5385105893689 2 472.2763977050781 MULTI HCD FTMS 0 0 0 9996 14991.1220703125 0.007846242980486876 32 -0.9012718200683594 7 Unmodified _LSTNLPVSL_ ENSG00000164299|ENST00000296739|SPZ1;ENSG00000164299|ENST00000296739|SPZ1 5.731851221503515 0.3075653528928475 1 S 1 8 0.088644 0 0 0.0094048 0 0 499.543132026672 352.9493502252563 852.4924822519283 0 0 0 0 0 0 0 0 0 + S 0.0094048 + + 4 + NaN NaN 98946.7 NaN 7453 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10004 48.985 NaN 160710 35 0 15251 0.261 + 25717 SKFGRELEI 9 65 539.7973659217745 1077.5801789103489 2 539.79931640625 MULTI HCD FTMS 0 0 0 9996 26866.076171875 0.032541663663764146 19 -0.5364646911621094 8 Unmodified _SKFGRELEI_ tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 16.149105407346934 0.22083165093524068 1 E{I|L} 2 7 24.776 0 0 2.2993 0 0 817.4462187675787 0 817.4462187675787 0 13.349621957594096 0 0 0 0.3807196863200844 0 0 0 + E{I|L} 2.2993 + + 65 NaN NaN 112375.6 NaN 7454 2548 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10006 48.99 NaN 1971000 35 0 276110 0.327 + 4782 EYVEKFYRI 9 86 416.22019191672985 1245.6387463503895 3 416.220458984375 MULTI HCD FTMS 0 0 0 10005 716247.4375 0.2743511977938446 6 -0.16788864135742188 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 15.738622578938676 0.22437813149664254 1 [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 9 0 + 40.965 0 0 3.2886 3.2886 87.641 0 0 0 10.526421446773355 4.762036441594191 4.762036441594191 24.806579926508295 0 0.2614393726401688 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}EV[C(Carbamidomethyl (C))N] 3.2886;1.2972 +;- + 314 + NaN NaN 384203.9 NaN 7455 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10007 48.994 NaN 1028500 35 0 62276 0.261 + 34242 YPDRIMNTF 9 101 586.7737018509798 1171.5328507687595 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10005 624114.9375 0.15587145033964164 26 -0.7334632873535156 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 176.4269993864032 3.292532597148328E-10 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 102.4 0 0 8.7405 8.7405 94.45 0 0 0 64.427288246655 27.434239665113722 27.434239665113722 13.015384402724592 0 2.555462187404089 1.3010299956639813 2.334121882396211 1.2689301784845295 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GQ[KA]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F} 8.7405;7.6295;6.213;5.962;5.6577;5.427;5.2549;5.176;4.8717;4.8683 +;-;+;-;-;-;-;-;-;- + 5004 + NaN NaN 250490.8 NaN 7456 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10008 48.998 NaN 537880 35 0 86360 0.261 + 554 APEEHPVLL 9 68 502.7741653025147 1003.5337776718294 2 502.7744445800781 MULTI HCD FTMS 0 0 0 10005 173436.171875 0.0016633295624514245 93 -2.6545181274414062 3 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 57.47134341890925 0.0211188941628804 1 APEEH[VP]{I|L}{I|L} 9 0 + 42.034 0 0 4.1886 4.1886 89.463 0 0 0 11.589001661099076 8.657424843733637 8.657424843733637 42.03431425482306 0 1.4247425010840047 0 0.6694451763165201 0 + + APEEH[VP]{I|L}{I|L} 4.1886 + + 66 + NaN NaN 170881 NaN 7457 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10009 49.001 NaN 452510 35 0 26500 0.261 + 22808 QYLGQIQHI 9 81 550.2984049966818 1098.5822570601636 2 550.2984619140625 MULTI HCD FTMS 0 0 0 10005 171852.171875 1 0 0 4 Unmodified _QYLGQIQHI_ ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS;nc|ENSG00000176890|P04818-3|TYMS 85.27202061508552 0.004649858145912257 1 [YQ]{I|L}GQ{I|L}QH{I|L} 9 0 + 64.957 0 0 5.9128 5.9128 87.822 0 0 0 41.090671722280234 4.659905027075268 4.659905027075268 9.208187539523749 0 1.5044321917401078 1 0 0.7059771852360797 + + [YQ]{I|L}GQ{I|L}QH{I|L};[YQ]{I|L}G[AG]{I|L}QH{I|L};[YQ]{I|L}GQ{I|L}[AG]H{I|L};[YQ]{I|L}G[AG]{I|L}[AG]H{I|L};[YQ]{I|L}G[KS][PG]H{I|L};[{M(Oxidation (M))|F}E]KG[KS][PG]H{I|L};[YT]K{[ES]|[DT]|[{I|L}C]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};[{M(Oxidation (M))|F}E][RV]{[VA]|[{I|L}G]}EH{I|L};[YT]K{[RE]|[WV]}K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YT]K{[RE]|[WV]}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 5.9128;5.0747;4.7281;3.5978;3.2597;1.9116;0.89662;0.73604;0.10377;0.10377 +;-;-;-;-;-;-;-;-;- + 1241 + NaN NaN 151673.1 NaN 7458 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10010 49.004 NaN 328560 35 0 22020 0.261 + 2663 DVFVVGTER 9 64 511.2692358614238 1020.5239187896476 2 511.78704833984375 MULTI HCD FTMS 0 0 0 10005 49260.27734375 0.6958480970638004 3 -0.08559036254882812 5 Unmodified _DVFVVGTER_ ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000263001|ENST00000573035|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I 65.47368725323818 0.010552856507075443 1 [DV]{M(Oxidation (M))|F}VVGT{[RE]|[WV]} 9 0 + 77.149 0 0 7.5597 7.5597 94.97 0 0 0 41.443248821684406 3.1234684152074976 3.1234684152074976 35.24227503252014 0 2.079689690656103 1.6989700043360187 1.1791746928241125 0 + + [DV]{M(Oxidation (M))|F}VVGT{[RE]|[WV]};[DV]{M(Oxidation (M))|F}VRTA[DV];[{M(Oxidation (M))|F}V]GTRVE[DV];[YV][TP]VGT{[RE]|[WV]};[{M(Oxidation (M))|F}V]DVRTA[DV];[{M(Oxidation (M))|F}V]K{[QG]|[NA]}GTA[DV];[{M(Oxidation (M))|F}V]G[KQ]G[TA][DV];[{M(Oxidation (M))|F}V]G[KQ][QT][DV];[YV]KEPT{[RE]|[WV]};[{M(Oxidation (M))|F}V]K{[QG]|[NA]}[QT][DV] 7.5597;4.1064;3.1907;2.7041;1.4841;0.70002;0.6094;0.3031;0.15573;0.0081208 +;-;-;-;-;-;-;-;-;- + 832 + NaN NaN 137058.5 NaN 7459 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10011 49.008 NaN 202940 35 0 32851 0.261 + 35870 YYQYRTIE 8 50 568.2745473953886 1134.534541857577 2 568.2615966796875 MULTI HCD FTMS 0 0 0 10005 13066.8662109375 0.24133580836317098 -2 0.055912017822265625 6 Unmodified _YYQYRTIE_ REV__ENSG00000070778|ENST00000556564|PTPN21;REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF;REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF 13.50788311687929 0.4944073034352369 1 YY{I|L}W 4 -1 31.911 0 0 2.8127 0 0 0 506.2070711725219 506.2070711725219 8.723637474483468 0 0 0 0 0.5 1.5228787452803376 0 0 YY{I|L}W 2.8127 - 39 + NaN NaN 116336.6 NaN 7460 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10012 49.011 NaN 202310 35 0 13439 0.262 -1 YPHWPARIDEM 11 68 477.5555638909192 1429.6448622729577 3 477.5555114746094 MULTI HCD FTMS 0 0 0 10005 52909.06640625 0.765219192781922 2 -0.05591583251953125 7 Oxidation (M) _YPHWPARIDEM(Oxidation (M))_ ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000495212.1_1_1:156715087-156721275:-|nuORF 10.898955630103616 0.3621194540206772 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.5381 0 0 1264.59903815362 0 1264.59903815362 0 9.78347485907939 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.5381 + + 64 + NaN NaN 115842.2 NaN 7461 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10013 49.014 NaN 115420 35 0 10597 0.261 + 6070 FPEDREVNL 9 47 559.7773092790134 1117.5400656248266 2 559.77734375 MULTI HCD FTMS 0 0 0 10005 20159.666015625 0.46078208075712596 -3 0.08550643920898438 8 Unmodified _FPEDREVNL_ ENSG00000162227|ENST00000294168|TAF6L;ENST00000524976.5_1_11:62538888-62549806:+|nuORF;ENST00000532915.1_1_11:62538888-62545815:+|nuORF 7.608950283845883 0.29333554423920943 1 N{I|L} 2 7 20.445 0 0 1.8295 0 0 872.4059466178967 0 872.4059466178967 0 5.752574989159953 0 0 0 0.4247425010840047 0 0 0 + N{I|L} 1.8295 + + 65 NaN NaN 100249.4 NaN 7462 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10014 49.018 NaN 188140 35 0 10561 0.261 + 20953 PLEKETLK 8 74 479.28447753019225 956.5544021271845 2 480.25091552734375 MULTI HCD FTMS 0 0 0 10005 23335.552734375 0.20564851851104712 -7 0.20275115966796875 9 Unmodified _PLEKETLK_ ENSG00000132688|ENST00000368223|NES;NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant 7.289230182591677 0.5311777711368266 1 [YR]{I|L}G 4 7 13.812 0 0 1.444 0 0 0 464.26018760985954 464.26018760985954 5.537275116073344 0 0 0 0 0 0 0 0 [YR]{I|L}G 1.444 - 159 NaN NaN 117280.3 NaN 7463 2549 10005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10016 49.023 NaN 431640 35 0 34080 0.327 + 21721 QADPTKLEL 9 81 507.7766832843215 NaN 0 507.77685546875 PEAK HCD FTMS 0 0 0 10015 237684.84375 0.8935087963317565 1 -0.023014068603515625 1 Unmodified _QADPTKLEL_ ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF;ENST00000523219.1_1_5:159833399-159834623:-|nuORF 99.75527289724121 3.223093066262894E-05 1 D 1 8 18.979 0 0 1.8726 0 0 199.09582717109532 696.393769039993 895.4895962110884 0 0 0 0 0 1 0 0.5 0 + D 1.8726 + + 89 NaN NaN 160087.5 NaN 7464 2550 10015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10017 49.027 NaN 211500 35 0 23671 0.261 + 4777 EYVEKFYRI 9 43 623.8270445852378 1245.6395362372755 2 623.8267211914062 MULTI HCD FTMS 0 0 0 10015 118147.1875 0.24446258817994473 7 -0.187591552734375 2 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 51.487983226225225 0.029489205318603332 1 EYVEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 87.331 0 0 7.0109 7.0109 95.346 0 0 0 55.19077524932108 8.384767769392738 8.384767769392738 87.33078780285204 0 1.1237125054200234 2 0.75 0 + + EYVEK{M(Oxidation (M))|F}YR{I|L} 7.0109 + + 160 + NaN NaN 115624 NaN 7465 2550 10015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10018 49.031 NaN 233360 35 0 24515 0.262 + 166 AEKLITQTF 9 57 525.795343170263 1049.5761334073259 2 525.795166015625 MULTI HCD FTMS 0 0 0 10015 101470.4375 0.5408587684998898 3 -0.0822906494140625 3 Unmodified _AEKLITQTF_ ENSG00000090273|ENST00000321265|NUDC 46.0223103267499 0.037698999139422325 1 {[CP]|[EA]}K{I|L}{I|L}TQT{M(Oxidation (M))|F} 9 0 + 52.858 0 0 5.0362 5.0362 86.351 0 0 0 33.394484365698744 13.363650028014433 13.363650028014433 9.208187539523749 0 1.6747425010840047 0 0.7059771852360797 0 + + {[CP]|[EA]}K{I|L}{I|L}TQT{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}{I|L}T[AG]T{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}[KT][DV]{M(Oxidation (M))|F} 5.0362;4.1588;0.64586 +;-;- + 177 + NaN NaN 123654.6 NaN 7466 2550 10015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10019 49.034 NaN 131500 35 0 14527 0.261 + 13099 KYLEMIYSM 9 47 605.2806176118941 1208.546682290588 2 605.2806396484375 MULTI HCD FTMS 0 0 0 10015 48006.3828125 0.5283784661090366 9 -0.24686050415039062 4 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 43.981846655682396 0.04706587046877104 1 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 3 59.628 0 0 4.9338 0 0 404.24046523261876 0 404.24046523261876 0 46.52880645020623 0 0 0 2.1747425010840047 0 0 0 + E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.9338 + + 116 NaN NaN 104158.6 NaN 7467 2550 10015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10020 49.037 NaN 187890 35 0 32121 0.262 + 26479 SVAITVAVVD 10 58 487.2803321721241 972.5461114110482 2 487.2804260253906 MULTI HCD FTMS 0 0 0 10015 54408.20703125 0.38974543554220686 6 -0.16126251220703125 5 Unmodified _SVAITVAVVD_ ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 39.94969957227396 0.1458432724694501 1 [VS]A{I|L}[MT]V[RP] 9 4 + 51.417 0 0 5.2868 5.2868 89.409 0 0 0 3.229459007977198 25.75520889957673 3.229459007977198 17.218487496163554 0 1 1.6989700043360187 0.3054621874040891 0 [VS]A{I|L}[MT]V[RP];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[MT]{I|L}A[PA];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[MT][PA]A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[MT]VV[PG];[TA]VV[MT]V[RP] 5.2868;3.5164;3.0507;2.7163;1.6395 -;-;-;-;- 119 NaN NaN 118982.3 NaN 7468 2550 10015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10021 49.041 NaN 220390 35 0 24120 0.261 -1 KEKNEKCVLY 10 58 437.5638773637588 1309.6698026914764 3 437.90899658203125 MULTI HCD FTMS 0 0 0 10015 13495.1435546875 0.18129981176028537 6 -0.16126251220703125 6 Carbamidomethyl (C) _KEKNEKC(Carbamidomethyl (C))VLY_ ENSG00000153233|ENST00000283228|PTPRR;ENST00000548220.1_1_12:71054984-71148538:-|nuORF;ENST00000549107.5_1_12:71032966-71078579:-|nuORF;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;nc|ENSG00000153233|Q15256-5|PTPRR 3.5870582119611467 0.4563168352879256 1 Y 1 -1 19.292 0 0 1.473 0 0 1128.5960092117873 0 1128.5960092117873 0 3.8071968632008435 0 0 0 0.3807196863200844 0 0 0 Y 1.473 + + 11 + NaN NaN 124856.1 NaN 7469 2550 10015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10023 49.046 NaN 1854500 35 0 153320 0.327 + 1345 AYPHNLMTF 9 98 555.2577483138126 1108.5009436944251 2 555.2578735351562 MULTI HCD FTMS 0 0 0 10022 1084065.5 0.7536395104315673 4 -0.11197280883789062 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 149.9946105101851 8.83195450578534E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 97.85 0 0 8.8272 8.8272 95.07 0 0 0 27.108930019204877 49.324966979700434 27.108930019204877 15.348017428648063 0 2.5356668758921828 2 0.7302046884880937 0.6139829889124311 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]Q{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}NMAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TAY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][AG]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F} 8.8272;7.4426;6.6675;5.7782;5.7293;5.6204;5.6193;5.6061;5.2829;5.1741 +;-;-;-;-;-;-;-;-;- + 4145 NaN NaN 384949.4 NaN 7470 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10024 49.05 NaN 513590 35 0 99539 0.261 + 2146 DGINDVHLI 9 66 498.261358950232 994.5081649672641 2 498.771728515625 MULTI HCD FTMS 0 0 0 10022 7703.0673828125 0.43436310317753746 -3 0.08553695678710938 2 Unmodified _DGINDVHLI_ tr|U7SNM2|U7SNM2_FUSNUMagnesiumtransportproteinCorAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=corAPE=3SV=1 10.823927491677226 0.26684000660059787 1 [TA]{I|L}E 4 8 31.669 0 0 3.1844 0 0 0 577.2742933671544 577.2742933671544 1.5405282713854227 0 0 0 0 0 1.5228787452803376 0.3252574989159953 0 [TA]{I|L}E 3.1844 - 199 NaN NaN 177011.7 NaN 7471 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10025 49.054 NaN 197020 35 0 16042 0.261 + 6202 FPENFHQNL 9 57 573.2722932653356 1144.5300335974712 2 573.2724609375 MULTI HCD FTMS 0 0 0 10022 109792.6640625 0.9186170433202004 5 -0.13824844360351562 3 Unmodified _FPENFHQNL_ ENSG00000110442|ENST00000263401|COMMD9;ENST00000526789.1_1_11:36300025-36310962:-|nuORF;ENST00000528608.5_1_11:36298627-36310962:-|nuORF;nc|ENSG00000110442|Q9P000-2|COMMD9 31.26834338654808 0.10542797264966089 1 DQH[C(Carbamidomethyl (C))H][YR] 7 8 25.546 0 0 2.232 0 0 130.10666193679816 0 130.10666193679816 0 4.463497855897103 0 0 0 0.4247425010840047 0 0 0.3807196863200844 DQH[C(Carbamidomethyl (C))H][YR] 2.232 - 122 + NaN NaN 125045.7 NaN 7472 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10026 49.057 NaN 462150 35 0 161610 0.262 + 8477 HADPTELAL 9 46 483.74824087871343 965.4819288242269 2 483.74810791015625 MULTI HCD FTMS 0 0 0 10022 132531.09375 0.2756462094604282 -5 0.14142227172851562 4 Unmodified _HADPTELAL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 15.847184025352803 0.2234401846867398 1 E{I|L}A{I|L} 4 5 39.553 0 0 4.0967 0 0 521.2226429669937 0 521.2226429669937 0 24.815534464597704 0 0 0 1 0 0 0 + E{I|L}A{I|L} 4.0967 + + 73 NaN NaN 156037.6 NaN 7473 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10027 49.06 NaN 171520 35 0 12517 0.261 -1 YPEGFEIHSM 10 65 613.2634398604836 1224.512326787767 2 613.2631225585938 MULTI HCD FTMS 0 0 0 10022 63572.234375 0.18798924356080646 13 -0.3620796203613281 5 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 31.26834338654808 0.2211790902911672 1 YPE{I|L} 4 -1 51.714 0 0 4.2233 0 0 0 719.2694185846311 719.2694185846311 31.052659518797938 0 0 0 0 0.7302046884880937 2 0 0 YPE{I|L} 4.2233 - 137 + NaN NaN 126793.4 NaN 7474 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10028 49.064 NaN 95913 35 0 6980.5 0.262 -1 MADIEYRL 8 52 513.7498531319725 1025.4851533307449 2 513.7501831054688 MULTI HCD FTMS 0 0 0 10022 15507.95703125 0.2240461844613173 11 -0.3062095642089844 6 Oxidation (M) _M(Oxidation (M))ADIEYRL_ ENSG00000111445|ENST00000454402|RFC5;nc|ENSG00000111445|P40937-2|RFC5 24.020572477871973 0.4170589785259073 1 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}E 5 -1 43.481 0 0 4.2401 0 0 0 447.23606287174067 447.23606287174067 27.996812376923046 0 0 0 0 1.1747425010840047 1.3010299956639813 0 0 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}E 4.2401 + + 33 + NaN NaN 104351.6 NaN 7475 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10029 49.067 NaN 123500 35 0 15895 0.262 + 35686 YYKWLEQSF 9 56 421.8729716370388 1262.5970855113164 3 421.87274169921875 MULTI HCD FTMS 0 0 0 10022 32029.66015625 0.030885642447525098 65 -1.8255157470703125 7 Unmodified _YYKWLEQSF_ tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3456 0 0 1097.5179667142445 0 1097.5179667142445 0 11.505149978319906 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3456 + + 8 + NaN NaN 99106.6 NaN 7476 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10030 49.07 NaN 120770 35 0 22906 0.261 + 697 APYEADAQL 9 42 489.23219102288806 976.4498291125761 2 489.2322998046875 MULTI HCD FTMS 0 0 0 10022 27181.07421875 0.2694323491745638 -6 0.170989990234375 8 Unmodified _APYEADAQL_ ENSG00000174371|ENST00000366548|EXO1;nc|ENSG00000174371|Q9UQ84-4|EXO1 13.90604991867851 0.24021115267848145 1 ADAQ{I|L} 5 4 38.271 0 0 3.9194 0 0 460.1961842267594 0 460.1961842267594 0 31.281446971601312 0 0 0 0 0 0.3807196863200844 0 + ADAQ{I|L} 3.9194 + + 58 NaN NaN 112305.2 NaN 7477 2551 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10032 49.075 NaN 744930 35 0 92001 0.327 + 13032 KYITQGQLL 9 79 532.3093632397658 1062.6041735463316 2 532.31103515625 MULTI HCD FTMS 0 0 0 10031 135328.6875 0.18613454086531292 5 -0.1349029541015625 1 Unmodified _KYITQGQLL_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 33.4449034751529 0.0954363425218424 1 [Y{I|L}]K[PS]TE{I|L}{I|L} 9 6 + 38.166 0 0 3.5917 3.5917 81.232 0 0 0 2.147642715192511 1.5089650591506825 1.5089650591506825 3.7628749457997657 0 0.9247425010840047 0 0 0.3054621874040891 [Y{I|L}]K[PS]TE{I|L}{I|L};[Y{I|L}]K[PS]TNK{I|L};[Y{I|L}]K{[RE]|[WV]}E{I|L}{I|L};[Y{I|L}]KT[PS]E{I|L}{I|L};[YR]{[VA]|[{I|L}G]}VTE{I|L}{I|L};[Y{I|L}]KTQ{[QG]|[NA]}{I|L}{I|L};[Y{I|L}]K[PS]TN{I|L}K;[Y{I|L}]{[NV]|[RG]}VTE{I|L}{I|L};[Y{I|L}]KT[PS]NK{I|L};[Y{I|L}]K[PS]TGGK{I|L} 3.5917;3.2376;2.9821;2.8991;2.8379;2.7334;2.6668;2.5546;2.545;2.371 -;-;-;-;-;-;-;-;-;- 842 NaN NaN 197017.4 NaN 7478 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10033 49.08 NaN 269740 35 0 51110 0.261 + 28215 TLDPVEKAL 9 47 493.28184364074605 984.5491343482921 2 493.2818908691406 MULTI HCD FTMS 0 0 0 10031 157088.625 0.746332336879604 2 -0.055896759033203125 2 Unmodified _TLDPVEKAL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;nc|ENSG00000109971|P11142-2|HSPA8 42.312485326615175 0.05472917415473307 1 [{I|L}T]DPVEKA{I|L} 9 0 + 73.07 0 0 7.4217 7.4217 95.951 0 0 0 25.642492736872597 58.465781442533356 25.642492736872597 73.06987521229523 0 2.322682509756042 2 0 0 + + [{I|L}T]DPVEKA{I|L} 7.4217 + + 71 NaN NaN 136205.8 NaN 7479 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10034 49.083 NaN 416230 35 0 91844 0.261 + 3879 EPNPDDPLM 9 63 522.2210675061094 1042.4275820790187 2 522.2210083007812 MULTI HCD FTMS 0 0 0 10031 197166.90625 0.6856278692611246 -6 0.1710968017578125 3 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 56.17704186161178 0.022929533404884107 1 DP{I|L}{M(Oxidation (M))|F} 4 5 34.865 0 0 3.3446 0 0 552.2173743605272 0 552.2173743605272 0 30.260847058321687 0 0 0 1.2302046884880937 0 0 0 + DP{I|L}{M(Oxidation (M))|F} 3.3446 + + 130 + NaN NaN 149765.2 NaN 7480 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10035 49.087 NaN 241200 35 0 26017 0.261 -1 0 64 526.2482968620022 1050.4820407908044 2 526.2483520507812 MULTI HCD FTMS 0 0 0 10031 74775.9609375 0.9887800853125915 -4 0.11521148681640625 4 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 3 -1 17.205 0 0 1.6378 0 0 0 716.338613626995 716.338613626995 1.007112333562862 0 0 0 0 0.8252574989159953 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 1.6378 - 63 NaN NaN 140085 NaN 7481 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10036 49.09 NaN 167030 35 0 46334 0.261 -1 MPPMGSPVI 9 41 472.73214226142085 943.4497315896417 2 472.7319030761719 MULTI HCD FTMS 0 0 0 10031 130362.3359375 0.8834697281626556 -3 0.08559036254882812 5 Oxidation (M) _M(Oxidation (M))PPMGSPVI_ ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A 28.486842064014134 0.11819662193267319 1 SPV{I|L} 4 -1 42.735 0 0 4.5297 0 0 529.201086459738 0 529.201086459738 0 27.250547101681875 0 0 0 1 0 0.3807196863200844 0 SPV{I|L} 4.5297 + + 18 NaN NaN 118312.8 NaN 7482 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10037 49.093 NaN 236540 35 0 36909 0.261 + 26480 SVAITVAVVD 10 55 487.2803321721241 972.5461114110482 2 487.2791748046875 MULTI HCD FTMS 0 0 0 10031 62450.40234375 0.4473545553021269 8 -0.22381973266601562 6 Unmodified _SVAITVAVVD_ ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 27.628801355627647 0.2527626205058048 1 [VS]A{I|L}{[C(Carbamidomethyl (C))G]|[NC]}SV 8 5 53.391 0 0 5.4898 0 0 0 196.15631583903567 196.15631583903567 29.578343878162343 0 0 0 0 1.4247425010840047 2 0.3252574989159953 0 [VS]A{I|L}{[C(Carbamidomethyl (C))G]|[NC]}SV 5.4898 - 110 NaN NaN 134884.9 NaN 7483 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10038 49.097 NaN 162850 35 0 8760 0.261 + 34349 YPEGFEIHSM 10 61 613.2634398604836 1224.512326787767 2 613.2628173828125 MULTI HCD FTMS 0 0 0 10031 56458.56640625 0.16695343958859393 14 -0.3916435241699219 7 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 45.69961567697781 0.09594615698576985 1 YPEHQE 6 6 40.169 0 0 3.2804 0 0 0 438.1703280084594 438.1703280084594 21.483259264971153 0 0 0 0 0 0 0.7059771852360797 0 YPEHQE 3.2804 - 353 + NaN NaN 105917.6 NaN 7484 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10039 49.1 NaN 89918 35 0 9716.2 0.261 + 35787 YYNAAGFNKL 10 42 580.7885920335192 1159.5626311338383 2 580.7899780273438 MULTI HCD FTMS 0 0 0 10031 62669.05078125 1 0 0 8 Unmodified _YYNAAGFNKL_ ENSG00000156467|ENST00000287022|UQCRB;ENST00000518876.1_1_8:97245315-97245435:-|nuORF;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;nc|ENSG00000156467|P14927-2|UQCRB 49.93300154707207 0.07803319134556608 1 YYNA 4 6 49.253 0 0 4.2475 0 0 0 645.3363301105312 645.3363301105312 24.726890629795548 0 0 0 0 1.305462187404089 2 0 0 + YYNA 4.2475 + + 89 + NaN NaN 101097.2 NaN 7485 2552 10031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10041 49.105 NaN 1935300 35 0 202640 0.327 + 24318 RYGLVTNEI 9 98 532.7902655802185 1063.5659782272369 2 532.7906494140625 MULTI HCD FTMS 0 0 0 10040 769711 0.37995474866305673 -4 0.11519241333007812 1 Unmodified _RYGLVTNEI_ ENSG00000115267|ENST00000649979|IFIH1 100.0907132914201 0.004261551473353346 1 [YR]{[VA]|[{I|L}G]}VTNE{I|L} 9 0 + 65.956 0 0 6.2014 6.2014 88.276 0 0 0 1.2718185701353235 48.319328110613355 1.2718185701353235 9.208187539523749 0 2.079689690656103 0 0.555462187404089 0.5501648626366046 + + [YR]{[VA]|[{I|L}G]}VTNE{I|L};[YR]{[VA]|[{I|L}G]}VTGGE{I|L};[YR]{[VA]|[{I|L}G]}VTEN{I|L};[YR]{[VA]|[{I|L}G]}VTEGG{I|L};[YR]{[VA]|[{I|L}G]}VTE{I|L}N;{[QD]|[EN]|[WG]|[KD]|[RS]}T[R{I|L}][TA]{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}T[R{I|L}][YG]V{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}T[{I|L}V]G[YR]{I|L};{[QN]|[E{I|L}]|[KN]}D[KA][YV]N{I|L};{[QS]|[NT]}E[R{I|L}][TA]{M(Oxidation (M))|F}{I|L} 6.2014;5.3356;5.0274;4.1616;3.8636;1.8768;1.6173;1.5015;1.3881;1.3477 +;-;-;-;-;-;-;-;-;- + 1277 NaN NaN 374186.2 NaN 7486 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10042 49.109 NaN 406240 35 0 36404 0.261 + 26960 SYLKDTKLW 9 80 577.3163588096602 1152.6181646861203 2 577.33447265625 MULTI HCD FTMS 0 0 0 10040 40406.484375 0.6557139075453824 1 -0.026294708251953125 2 Unmodified _SYLKDTKLW_ ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 42.312485326615175 0.05472917415473307 1 MV{M(Oxidation (M))|F}KQD{I|L} 7 7 59.504 0 0 5.1625 0 0 0 288.13520227603755 288.13520227603755 11.328927574747837 0 0 0 0 0 0 0.5387254899964358 1.1906140654642814 MV{M(Oxidation (M))|F}KQD{I|L} 5.1625 - 1402 + NaN NaN 150953.8 NaN 7487 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10043 49.113 NaN 307700 35 0 59826 0.261 + -1 HNMAEPFVLE 10 55 601.7790637740396 1201.5435746148792 2 601.7792358398438 MULTI HCD FTMS 0 0 0 10040 167539.5625 0.5263276424833029 -12 0.3476600646972656 3 Oxidation (M) _HNM(Oxidation (M))AEPFVLE_ REV__ENSG00000135638|ENST00000258106|EMX1 26.268140514670165 0.2654086933305545 1 EMANVE{I|L} 7 -1 72.709 0 0 6.0513 0 0 397.16807753730626 0 397.16807753730626 0 66.51100739637513 0 0 0 0.8494850021680094 0 0.3252574989159953 1.1989700043360187 EMANVE{I|L} 6.0513 - 321 NaN NaN 132182.2 NaN 7488 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10044 49.116 NaN 525120 35 0 52229 0.262 + 14426 LENEQHLI 8 79 498.261358950232 994.5081649672641 2 498.27972412109375 MULTI HCD FTMS 0 0 0 10040 4737.6083984375 0.23222830192779736 -3 0.0822906494140625 4 Unmodified _LENEQHLI_ REV__ENST00000514473.2_1_14:22849323-22849389:-|nuORF 14.581692164780916 0.48650662947107914 1 [TA]{I|L}E 4 -1 30.802 0 0 3.0972 0 0 0 577.2739260053883 577.2739260053883 -1.5841654116560804 0 -1.5841654116560804 0 0 0 1.6989700043360187 0 0 [TA]{I|L}E 3.0972 - 550 NaN NaN 163340.6 NaN 7489 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10045 49.12 NaN 504790 35 0 112730 0.261 + 15426 LPDKTIASL 9 65 479.28447753019225 956.5544021271845 2 479.28424072265625 MULTI HCD FTMS 0 0 0 10040 236061.140625 0.32372896863830775 -5 0.14481353759765625 5 Unmodified _LPDKTIASL_ ENSG00000117625|ENST00000419091|RCOR3;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3 87.25819977447905 0.004597812622239197 1 [{I|L}P]DKT{I|L}AS{I|L} 9 0 + 80.785 0 0 8.4454 8.4454 95.661 0 0 0 20.87128018967597 58.10911268361153 20.87128018967597 24.247425010840047 0 1.8494850021680094 1.5228787452803376 1.0228787452803376 0 + + [{I|L}P]DKT{I|L}AS{I|L};[DP]{I|L}KT{I|L}AS{I|L};[{I|L}P]DKT{[SA]|[TG]}{I|L}{I|L};{[TV]|[{I|L}S]}A[{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]}P{I|L};[DP]{I|L}KT{[SA]|[TG]}{I|L}{I|L};{[SA]|[TG]}{I|L}[{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]}P{I|L};{[TV]|[{I|L}S]}A[{I|L}T]{NN|[MP]|[D{I|L}]|[EV]}[KP] 8.4454;5.9106;4.473;2.1043;1.9381;0.74414;0.06073 +;-;-;-;-;-;- + 249 NaN NaN 159558.5 NaN 7490 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10046 49.123 NaN 194030 35 0 59575 0.261 -1 ESEHSMDTLL 10 48 589.2554832117141 1176.4964134902282 2 589.2562255859375 MULTI HCD FTMS 0 0 0 10040 109378.5234375 0.21388686959028785 20 -0.5625114440917969 6 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 10.823927491677226 0.4098686510432541 1 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 51.788 0 0 4.4019 0 0 496.2096119611344 0 496.2096119611344 0 46.303381782370074 0 0 0 1 0 0.805462187404089 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 4.4019 - 30 NaN NaN 131336.6 NaN 7491 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10047 49.126 NaN 135990 35 0 13032 0.261 + 9777 HYKPTPLYF 9 53 583.3056984234008 1164.5968439136016 2 583.3064575195312 MULTI HCD FTMS 0 0 0 10040 56841.73046875 0.05197720942707478 51 -1.4172019958496094 7 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 53.832793166522166 0.026208976789938845 1 NWK[TP][{I|L}P]Y{M(Oxidation (M))|F} 9 2 + 44.56 0 0 3.8262 3.8262 80.269 0 0 0 13.802652907819635 4.19347469197298 4.19347469197298 1.249387366082999 0 1.6989700043360187 1.3979400086720375 0 0 NWK[TP][{I|L}P]Y{M(Oxidation (M))|F};HYK[TP][{I|L}P]Y{M(Oxidation (M))|F} 3.8262;3.719 -;+ + 51 + NaN NaN 114631.9 NaN 7492 2553 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10049 49.131 NaN 799800 35 0 46858 0.326 + 34243 YPDRIMNTF 9 88 586.7737018509798 1171.5328507687595 2 586.7739868164062 MULTI HCD FTMS 0 0 0 10048 410655.71875 0.10256043979372065 31 -0.8781776428222656 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 166.76915356408847 5.584250141028017E-09 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 110.37 0 0 9.4209 9.4209 94.971 0 0 0 70.93372183701504 14.09256854528806 14.09256854528806 12.26280941356464 0 2.9489700043360187 1.5228787452803376 1.642159058960253 1.2218487496163564 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 9.4209;8.3741;7.5141;7.0438;6.7281;6.4619;6.2578;6.1461;5.7781;5.6759 +;-;+;-;-;-;-;-;-;- + 5690 + NaN NaN 209843 NaN 7493 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10050 49.136 NaN 427980 35 0 26661 0.261 + 24546 RYLGKVLEL 9 86 545.8346483520276 1089.654743770855 2 545.8347778320312 MULTI HCD FTMS 0 0 0 10048 200624.265625 0.48422207139043366 2 -0.052677154541015625 2 Unmodified _RYLGKVLEL_ ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF;nc|ENSG00000132361|O75153|CLUH 51.629811660486645 0.02929079705179888 1 [YR]{I|L}GKV{I|L}E{I|L} 9 0 + 69.606 0 0 6.3879 6.3879 87.738 0 0 0 16.100067642479345 42.810253421807545 16.100067642479345 9.102196946754049 0 0.7059771852360797 1.0457574905606752 0.3494850021680094 0 + + [YR]{I|L}GKV{I|L}E{I|L};[YR]{I|L}GKVE{I|L}{I|L};[YR]{I|L}GK{I|L}VE{I|L};[YR]{I|L}GKEV{I|L}{I|L};[VP][HV]GKV{I|L}E{I|L};[YR]{I|L}GK{I|L}D{I|L}{I|L};[VP][HV]GKVE{I|L}{I|L};[VP][HV]GK{I|L}VE{I|L};[VP][HV]GKEV{I|L}{I|L};[VP][PG]R[{I|L}P]{I|L}E{I|L} 6.3879;5.5526;5.2606;4.8893;4.5831;4.4253;3.7478;3.4558;3.0846;2.8489 +;-;-;-;-;-;-;-;-;- + 705 NaN NaN 162050.3 NaN 7494 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10051 49.139 NaN 853610 35 0 119020 0.263 + 4783 EYVEKFYRI 9 68 416.22019191672985 1245.6387463503895 3 416.22039794921875 MULTI HCD FTMS 0 0 0 10048 239815.453125 0.0918588372811 11 -0.3094635009765625 3 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 16.565877749689598 0.21723083036893404 1 [YE]VEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 45.06 0 0 3.6174 3.6174 88.108 0 0 0 24.6265249738142 12.096142931993441 12.096142931993441 27.501925760339336 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}YR{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}EV[C(Carbamidomethyl (C))N] 3.6174;1.4095 +;- + 96 + NaN NaN 210519.2 NaN 7495 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10052 49.143 NaN 191330 35 0 16546 0.261 -1 MPDLENRVL 9 61 551.781073415985 1101.54759389877 2 551.7815551757812 MULTI HCD FTMS 0 0 0 10048 80463 0.47409633313217325 13 -0.3653564453125 4 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 38.61474834105838 0.07170385841135779 1 E{I|L}DPE 5 -1 46.925 0 0 4.2599 0 0 500.30586440254064 0 500.30586440254064 0 25.955612550363796 0 0 0 1.0994850021680094 0 0.2742275032520141 0 E{I|L}DPE 4.2599 - 84 NaN NaN 111774.3 NaN 7496 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10053 49.146 NaN 184710 35 0 25153 0.261 + 4727 EYSFYSDESL 10 46 620.256349523343 1238.498146113486 2 620.271484375 MULTI HCD FTMS 0 0 0 10048 23914.60546875 0.7097580825605431 6 -0.1679229736328125 5 Unmodified _EYSFYSDESL_ ENSG00000197635|ENST00000360534|DPP4;ENST00000434918.6_1_2:162888774-162891808:-|nuORF 9.38312468134398 0.42334543440173333 1 YA{I|L}DEYY 7 7 66.19 0 0 5.3444 0 0 0 318.12363611392817 318.12363611392817 -7.971514781187068 0 -7.971514781187068 0 0 0 1.6989700043360187 0.3494850021680094 0 YA{I|L}DEYY 5.3444 - 321 + NaN NaN 120359.1 NaN 7497 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10054 49.149 NaN 406490 35 0 44873 0.264 + -1 NTCASTEYFDM 11 64 452.16923641278333 1353.48587983855 3 452.1692810058594 MULTI HCD FTMS 0 0 0 10048 102693.875 0.650473404791233 -3 0.0855712890625 6 Carbamidomethyl (C),Oxidation (M) _NTC(Carbamidomethyl (C))ASTEYFDM(Oxidation (M))_ REV__ENSG00000139998|ENST00000533601|RAB15;REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF;REV__ENST00000585059.5_1_14:65415074-65417335:-|nuORF 2.2527281973983926 0.4090409658946738 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3269 0 0 1087.359436414781 0 1087.359436414781 0 12.272437815030626 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.3269 - 98 + NaN NaN 142972.3 NaN 7498 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10055 49.153 NaN 98465 35 0 5976.9 0.261 + 2664 DVFVVGTER 9 47 511.2692358614238 1020.5239187896476 2 511.2689208984375 MULTI HCD FTMS 0 0 0 10048 10853.021484375 0.0749821961464872 7 -0.2009735107421875 7 Unmodified _DVFVVGTER_ ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000263001|ENST00000573035|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I 12.240655878213236 0.2545997876781172 1 [DV][{M(Oxidation (M))|F}V]V{[NV]|[RG]}{[ET]|[MV]} 9 2 + 34.893 0 0 3.4192 3.4192 88.377 0 0 0 27.44604968113294 0.915149811213503 0.915149811213503 34.893324630099876 0 0.75 2 0 0 [DV][{M(Oxidation (M))|F}V]V{[NV]|[RG]}{[ET]|[MV]} 3.4192 - 50 + NaN NaN 112458.5 NaN 7499 2554 10048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10057 49.158 NaN 627370 35 0 90487 0.327 + 15241 LPAAGVGDMVM 11 82 546.7568773865822 1091.4992018399644 2 546.7568969726562 MULTI HCD FTMS 0 0 0 10056 250016.375 0.2888605968465565 -15 0.42342376708984375 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 136.33342141710068 0.0032144099819287736 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 [{I|L}P]A + + 86.329 1.9627 0.69804 7.9092 7.9092 66.625 0 0 0 0 71.63577411416816 0 0 0 3.4604093769761874 0 0.7134679910804405 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.9092 + + 795 + NaN NaN 189226.8 NaN 7500 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10058 49.162 NaN 323260 35 0 33601 0.261 + 35871 YYQYRTIE 8 74 568.2745473953886 1134.534541857577 2 568.2617797851562 MULTI HCD FTMS 0 0 0 10056 22355.478515625 0.41288993028778986 4 -0.11187362670898438 2 Unmodified _YYQYRTIE_ REV__ENSG00000070778|ENST00000556564|PTPN21;REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF;REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF 13.50788311687929 0.4944073034352369 1 YY{I|L} 3 -1 33.2 0 0 2.9263 0 0 0 692.3017061822874 692.3017061822874 15.757118944541158 0 0 0 0 0.4247425010840047 2 0 0 YY{I|L} 2.9263 - 447 + NaN NaN 130418.8 NaN 7501 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10059 49.166 NaN 238800 35 0 32442 0.263 + 35561 YYHDIDHSEF 10 67 442.51838899499296 1324.533337585179 3 442.51824951171875 MULTI HCD FTMS 0 0 0 10056 68002.5625 1 0 0 3 Unmodified _YYHDIDHSEF_ REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1 0.776531954647913 0.4711933975711956 1 T{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.5831 0 0 1058.4070386123258 0 1058.4070386123258 0 13.177418734074564 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5831 - 31 + NaN NaN 113140.6 NaN 7502 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10060 49.169 NaN 110390 35 0 19218 0.261 + -1 TLFWSSAYMS 10 39 604.7695199086545 NaN 0 604.7702026367188 PEAK HCD FTMS 0 0 0 10056 6544.1669921875 0.1649375596743124 -3 0.08229827880859375 4 Oxidation (M) _TLFWSSAYM(Oxidation (M))S_ REV__ENSG00000067208|ENST00000684568|EVI5;REV__ENSG00000142459|ENST00000538904|EVI5L;REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF;REV__nc|ENSG00000067208|O60447-2|EVI5;REV__nc|ENSG00000067208|O60447|EVI5;REV__nc|ENSG00000142459|Q96CN4|EVI5L 6.723162845929126 0.3344301934401713 1 AQ 2 -1 15.217 0 0 1.2601 0 0 131.09451737386445 874.3098848932249 1005.4044022670894 0 0 0 0 0 0.4247425010840047 0 0 0 AQ 1.2601 - 23 + NaN NaN 98842.7 NaN 7503 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10061 49.172 NaN 187840 35 0 13379 0.261 + 811 AVIDQGLITR 10 51 543.3188462293358 1084.6231395254715 2 543.3194580078125 MULTI HCD FTMS 0 0 0 10056 36398.57421875 0.5069071414668177 -1 0.026401519775390625 5 Unmodified _AVIDQGLITR_ ENSG00000278615|ENST00000524958|C11orf98;ENST00000354588.7_1_11:62430524-62435168:-|nuORF;ENST00000532786.2_1_11:62430524-62432598:-|nuORF 44.94466952835103 0.1024974934706924 1 {[VA]|[{I|L}G]}{I|L}DQG{I|L}{I|L}TR 10 0 + 63.414 0 0 5.8467 5.8467 86.979 0 0 0 56.424581615974105 12.01667520279372 12.01667520279372 9.164539485499255 0 2.385151878060192 0 0 0 + + {[VA]|[{I|L}G]}{I|L}DQG{I|L}{I|L}TR;{[VA]|[{I|L}G]}{I|L}D[AG]G{I|L}{I|L}TR;[{I|L}T][PS]QG{I|L}{I|L}TR 5.8467;5.0017;1.6188 +;-;- + 204 + NaN NaN 113596.4 NaN 7504 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10062 49.176 NaN 38579 35 0 9518.2 0.261 + 12422 KPLSLNHYLF 10 22 616.3455972069337 1230.6766414806673 2 616.3453979492188 MULTI HCD FTMS 0 0 0 10056 12318.5048828125 0.09040106149974493 10 -0.2830619812011719 6 Unmodified _KPLSLNHYLF_ REV__ENSG00000165029|ENST00000374736|ABCA1 2.843284757254958 0.46025374642504374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 90365.2 NaN 7505 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10063 49.179 NaN 72472 35 0 14504 0.261 + 34757 YPYYASVHE 9 45 564.7534599462454 1127.4923669592906 2 564.75244140625 MULTI HCD FTMS 0 0 0 10056 14009.3154296875 0.11229277848909086 10 -0.2830619812011719 7 Unmodified _YPYYASVHE_ ENST00000444292.2_1_X:95228690-95228804:-|nuORF 7.289230182591677 0.29575926068275815 1 YP 2 7 17.959 0 0 1.5928 0 0 0 864.3577364557249 864.3577364557249 0 0 0 0 0 0 0 0 0 + YP 1.5928 + + 38 + NaN NaN 102536.2 NaN 7506 2555 10056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10065 49.184 NaN 1260700 35 0 105680 0.327 + 1346 AYPHNLMTF 9 86 555.2577483138126 1108.5009436944251 2 555.2579345703125 MULTI HCD FTMS 0 0 0 10064 680049.8125 0.47276885738138436 9 -0.2567863464355469 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 136.33342141710068 0.00022087650154924235 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 97.731 0 0 8.8165 8.8165 94.191 0 0 0 24.76203644159419 46.296284849694715 24.76203644159419 11.822581265925436 0 2.579689690656103 2 0.4247425010840047 0.2614393726401688 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]Q{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][AG]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8.8165;7.7499;6.5225;6.2971;5.8909;5.5867;5.559;5.456;5.3743;5.2306 +;-;-;-;-;-;-;-;-;- + 4845 NaN NaN 289532.3 NaN 7507 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10066 49.188 NaN 238310 35 0 22435 0.261 + 32800 WSLHLSASL 9 55 507.2743606055291 NaN 0 507.274658203125 PEAK HCD FTMS 0 0 0 10064 68594.453125 0.7684713947770389 -5 0.13824844360351562 2 Unmodified _WSLHLSASL_ REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF 42.09456458481378 0.07155800144855468 1 SA 2 -1 16.643 0 0 1.6437 0 0 131.0886227096775 720.3462012001971 851.4348239098747 0 0 0 0 0 0.8807196863200843 0 0.28872548999643577 0 SA 1.6437 + + 32 + NaN NaN 127424.7 NaN 7508 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10067 49.192 NaN 120330 35 0 12389 0.261 + 4778 EYVEKFYRI 9 44 623.8270445852378 1245.6395362372755 2 623.8267211914062 MULTI HCD FTMS 0 0 0 10064 70893.4765625 0.14668823805512088 13 -0.3652076721191406 3 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 15.738622578938676 0.22437813149664254 1 {I|L}M{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 6 6 62.172 0 0 4.9912 0 0 0 447.23667322330317 447.23667322330317 50.74539712336197 0 0 0 0 0 1.6989700043360187 0.5 0.3807196863200844 {I|L}M{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 4.9912 - 88 + NaN NaN 98655.2 NaN 7509 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10068 49.195 NaN 138620 35 0 13018 0.264 + 2052 DEFKRLFAKY 10 39 439.5712101049826 1315.6918009151477 3 439.5711669921875 MULTI HCD FTMS 0 0 0 10064 67782.96875 1 0 0 4 Unmodified _DEFKRLFAKY_ ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ 14.957161354070239 0.3712077760547347 1 DEP 3 8 46.159 0 0 3.5083 0 0 0 971.5478609674436 971.5478609674436 26.42667503568731 0 0 0 0 0.4247425010840047 1.6989700043360187 0.5 0 DEP 3.5083 - 10 + NaN NaN 108912 NaN 7510 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10069 49.199 NaN 113710 35 0 11839 0.261 -1 TPENGYWTM 9 49 557.7291772494826 NaN 0 557.74755859375 PEAK HCD FTMS 0 0 0 10064 6911.30712890625 0.4232290431258142 -2 0.052677154541015625 5 Oxidation (M) _TPENGYWTM(Oxidation (M))_ ENSG00000111801|ENST00000244519|BTN3A3;ENST00000508906.6_3_6:26376811-26377501:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3 12.240655878213236 0.2359303321180293 1 WT 2 -1 24.024 0 0 2.1576 0 0 661.2702308643965 162.02295862369377 823.2931894880902 0 0 0 0 0 1.305462187404089 0 0 0 WT 2.1576 + + 31 + NaN NaN 100663.5 NaN 7511 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10070 49.202 NaN 87266 35 0 7212.5 0.261 -1 MPMQDIKMIL 10 45 634.3087510935613 1266.6029492539226 2 634.3092651367188 MULTI HCD FTMS 0 0 0 10064 24979.99609375 0.7711710662235636 -4 0.10857391357421875 6 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.5288652416199255 0.4513317009562028 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 16.682 0 0 1.3171 0 0 747.2923451154312 0 747.2923451154312 0 9.69273760456403 0 0 0 0.3494850021680094 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.3171 + + 8 NaN NaN 100036 NaN 7512 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10071 49.205 NaN 91685 35 0 13240 0.261 + 7519 FWTTSPRGMEA 11 37 641.7960109506997 NaN 0 641.7955322265625 PEAK HCD FTMS 0 0 0 10064 20178.240234375 0.8165457211855938 1 -0.02632904052734375 7 Unmodified _FWTTSPRGMEA_ REV__ENST00000487138.5_1_2:95944309-95944534:+|nuORF 10.799506525563784 0.3114850535502259 1 TN{M(Oxidation (M))|F} 3 -1 12.307 0 0 0.96031 0 0 164.08291438011184 752.3389376275999 916.4218520077118 0 0 0 0 0 0 0 0 0 TN{M(Oxidation (M))|F} 0.96031 - 37 + NaN NaN 97897.9 NaN 7513 2556 10064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10073 49.21 NaN 797630 35 0 367330 0.327 + 8478 HADPTELAL 9 48 483.74824087871343 965.4819288242269 2 483.74810791015625 MULTI HCD FTMS 0 0 0 10072 381507.625 0.7934827045936192 1 -0.02965545654296875 1 Unmodified _HADPTELAL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 15.847184025352803 0.2234401846867398 1 E{I|L}A{I|L} 4 5 39.553 0 0 4.0967 0 0 521.2231922834 0 521.2231922834 0 21.593793813122062 0 0 0 1 0 0 0 + E{I|L}A{I|L} 4.0967 + + 95 NaN NaN 206311 NaN 7514 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10074 49.215 NaN 296810 35 0 14855 0.261 + 822 AVMPPDIAAK 10 73 506.77870602814374 NaN 0 506.7928771972656 PEAK HCD FTMS 0 0 0 10072 3122.95361328125 0.22156123302577574 2 -0.059268951416015625 2 Unmodified _AVMPPDIAAK_ HUWE1|p.E3092K|1|0.46|ENSG00000086758|chrX:53551012-53551012|C/T|missense_variant 14.838274106304384 0.3224471714378502 1 VTN{M(Oxidation (M))|F} 4 9 10.807 0 0 1.0684 0 0 67.07010371689485 480.24091516666255 547.3110188835574 0 0 0 0 0 0 0 0 0.3807196863200844 VTN{M(Oxidation (M))|F} 1.0684 - 113 + NaN NaN 139228.6 NaN 7515 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10075 49.218 NaN 161760 35 0 34651 0.261 + 698 APYEADAQL 9 49 489.23219102288806 976.4498291125761 2 489.2321472167969 MULTI HCD FTMS 0 0 0 10072 100882.7421875 1 0 0 3 Unmodified _APYEADAQL_ ENSG00000174371|ENST00000366548|EXO1;nc|ENSG00000174371|Q9UQ84-4|EXO1 19.256988751693697 0.19398022840297344 1 A{M(Oxidation (M))|F}ADAQ{I|L} 7 3 52.683 0 0 5.3954 0 0 242.12674147773595 0 242.12674147773595 0 43.079051317897665 0 0 0 0.3494850021680094 0 0.3494850021680094 0.4247425010840047 A{M(Oxidation (M))|F}ADAQ{I|L} 5.3954 - 108 NaN NaN 99702.2 NaN 7516 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10076 49.222 NaN 213620 35 0 12933 0.261 -1 PFEGVLMLHS 10 64 573.2864356518505 1144.558318370501 2 573.2723999023438 MULTI HCD FTMS 0 0 0 10072 38219.83203125 1 0 0 4 Oxidation (M) _PFEGVLM(Oxidation (M))LHS_ SYTL5|p.R722H|1|0.48|ENSG00000147041|chrX:38126702-38126702|G/A|missense_variant 10.823927491677226 0.4098686510432541 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EHNKA{I|L} 8 -1 21.725 0 0 1.8981 0 0 0 205.05958723298605 205.05958723298605 1.7144972534425307 0 0 0 0 0.8182503180159344 1.3979400086720375 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EHNKA{I|L} 1.8981 - 203 NaN NaN 132238.2 NaN 7517 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10077 49.225 NaN 141290 35 0 12348 0.261 -1 DFPAMFCVL 9 52 529.7381822326274 1057.4618115320548 2 529.738525390625 MULTI HCD FTMS 0 0 0 10072 52670.87890625 0.3311597066798858 -10 0.27640533447265625 5 Oxidation (M) _DFPAM(Oxidation (M))FCVL_ ENST00000412091.1_2_7:65958297-65958540:-|nuORF 18.13498045792455 0.20367413111508956 1 V{I|L} 2 -1 25.969 0 0 2.4558 0 0 827.2994545203867 0 827.2994545203867 0 10.79181246047625 0 0 0 0.5 0 0 0 V{I|L} 2.4558 + + 39 NaN NaN 109236.5 NaN 7518 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10078 49.228 NaN 118660 35 0 10682 0.261 + 19467 NPTEIDKVL 9 56 514.7844599464566 1027.5543669597132 2 514.7843017578125 MULTI HCD FTMS 0 0 0 10072 38946.57421875 0.5088283191296409 -1 0.02632904052734375 6 Unmodified _NPTEIDKVL_ ENSG00000130684|ENST00000252979|ZNF337;nc|ENSG00000130684|Q9Y3M9-2|ZNF337 35.61225514009592 0.08548698421724198 1 NPTE[RK]{[{M(Oxidation (M))|F}H]|[RQ]} 8 4 + 36.029 0 0 3.5063 3.5063 88.517 0 0 0 15.06031837699198 2.2184874961635614 2.2184874961635614 36.02941850707254 0 0.6643943297944485 0 0 0 NPTE[RK]{[{M(Oxidation (M))|F}H]|[RQ]} 3.5063 - 78 + NaN NaN 100930.7 NaN 7519 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10079 49.231 NaN 354800 35 0 34177 0.261 + 11742 KDKFQKILT 9 80 560.8395856373633 NaN 0 560.85302734375 PEAK HCD FTMS 0 0 0 10072 6895.8837890625 0.23271187720917577 15 -0.4309577941894531 7 Unmodified _KDKFQKILT_ REV__ENSG00000141424|ENST00000269187|SLC39A6;REV__nc|ENSG00000141424|Q13433-2|SLC39A6 14.838274106304384 0.2220448417561729 1 Y{I|L}EK{I|L}K 6 -1 31.904 0 0 2.8494 0 0 113.05264514484004 229.11939417056877 342.1720393154088 0 0 0 0 0 0 0 1.305462187404089 0 Y{I|L}EK{I|L}K 2.8494 - 83 + NaN NaN 142769.6 NaN 7520 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10080 49.235 NaN 84799 35 0 7536.5 0.263 + 35687 YYKWLEQSF 9 52 421.8729716370388 1262.5970855113164 3 421.8727722167969 MULTI HCD FTMS 0 0 0 10072 20881.6484375 0.020135809253339746 71 -2.01287841796875 8 Unmodified _YYKWLEQSF_ tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1 7.101721422024254 0.29718071671418667 1 YY 2 7 44.222 0 0 3.5024 0 0 0 933.4479737420194 933.4479737420194 27.231975075880328 0 0 0 0 0.3252574989159953 2 0 0 + YY 3.5024 + + 7 + NaN NaN 111072.9 NaN 7521 2557 10072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10082 49.24 NaN 1121700 35 0 175240 0.327 -1 MPETTETVL 9 71 518.7471805634126 1035.479808193625 2 518.7470703125 MULTI HCD FTMS 0 0 0 10081 462311.84375 0.45291368660324477 -8 0.21724700927734375 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 21.74664581756881 0.17247014374749275 1 TV{I|L} 3 -1 41.995 0 0 4.0556 0 0 704.2705036866395 0 704.2705036866395 0 34.54750954047803 0 0 0 0.7302046884880937 0 0.8494850021680094 0 TV{I|L} 4.0556 + + 48 NaN NaN 256688.9 NaN 7522 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10083 49.244 NaN 483570 35 0 117840 0.261 + 3880 EPNPDDPLM 9 67 522.2210675061094 1042.4275820790187 2 522.2210693359375 MULTI HCD FTMS 0 0 0 10081 287571.3125 1 0 0 2 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 82.5293158979368 0.005033931517079822 1 DP{I|L}{M(Oxidation (M))|F} 4 5 55.279 0 0 5.303 0 0 552.2176991193375 0 552.2176991193375 0 41.60728139283883 0 0 0 1.75 0 1.274227503252014 0 + DP{I|L}{M(Oxidation (M))|F} 5.303 + + 215 NaN NaN 172954.8 NaN 7523 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10084 49.248 NaN 306000 35 0 65944 0.261 + 16490 LTAVHDAIL 9 61 476.7767694243766 951.5389859155532 2 476.7767639160156 MULTI HCD FTMS 0 0 0 10081 163205.15625 0.9739981628077579 -1 0.02965545654296875 3 Unmodified _LTAVHDAIL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF 64.23631603340823 0.01165516075559909 1 {[QN]|[E{I|L}]|[KN]}G{[SA]|[TG]}[H{I|L}]{I|L}{I|L} 9 5 + 38.936 0 0 4.0919 4.0919 80.155 0 0 0 2.508943624335565 14.498643667695752 2.508943624335565 0.45757490560675507 0 0.5 1.6989700043360187 0.7614393726401688 0 {[QN]|[E{I|L}]|[KN]}G{[SA]|[TG]}[H{I|L}]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}[H{I|L}]{I|L}{I|L} 4.0919;4.0438 -;- 96 NaN NaN 139534.5 NaN 7524 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10085 49.251 NaN 167360 35 0 37920 0.261 -1 MPPMGSPVI 9 42 472.73214226142085 943.4497315896417 2 472.73193359375 MULTI HCD FTMS 0 0 0 10081 79138.9453125 0.5363271684225887 3 -0.09231185913085938 4 Oxidation (M) _M(Oxidation (M))PPMGSPVI_ ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A 16.942295170755138 0.21397866736869717 1 S[VP]{I|L} 4 -1 30.005 0 0 3.1804 0 0 529.202440330275 0 529.202440330275 0 19.547509540478032 0 0 0 1 0 0.3807196863200844 0 S[VP]{I|L} 3.1804 + + 25 NaN NaN 112064.8 NaN 7525 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10086 49.254 NaN 590870 35 0 69643 0.261 + 28565 TPVDDRISL 9 89 508.27462204770234 1014.5346911622047 2 508.2745361328125 MULTI HCD FTMS 0 0 0 10081 216920.859375 0.3343515009979294 -4 0.10866165161132812 5 Unmodified _TPVDDRISL_ ENSG00000064703|ENST00000369702|DDX20 81.9152076656658 0.005232646987511684 1 TPVDDR{I|L}S{I|L} 9 0 + 90.824 0 0 8.9523 8.9523 89.742 0 0 0 3.655907281837841 3.655907281837841 3.655907281837841 3.655907281837841 0 2.716190326687972 1.5228787452803376 0.6549471895720984 0 + + TPVDDR{I|L}S{I|L};[TP]VDDR{I|L}S{I|L};{[TV]|[{I|L}S]}PDDR{I|L}S{I|L};[VP]TDDR{I|L}S{I|L};{I|L}SPDDR{I|L}S{I|L};{I|L}D[PS]DR{I|L}S{I|L};[TP]VD[VS]{[RE]|[WV]}{I|L};[VP]DTDR{I|L}S{I|L};TPV{[RE]|[WV]}[DV]S{I|L};{NN|[MP]|[D{I|L}]|[EV]}[PS]DR{I|L}S{I|L} 8.9523;8.592;7.5057;7.1507;6.925;5.9115;5.3935;5.3491;5.334;5.0705 +;+;-;-;-;-;-;-;-;- + 916 + NaN NaN 170588.7 NaN 7526 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10087 49.258 NaN 85106 35 0 12908 0.261 + 16499 LTDLVPQLS 9 35 493.28184364074605 984.5491343482921 2 493.28192138671875 MULTI HCD FTMS 0 0 0 10081 36779.74609375 0.17474157566779214 8 -0.22708511352539062 6 Unmodified _LTDLVPQLS_ REV__ENSG00000167716|ENST00000409644|WDR81;REV__nc|ENSG00000167716|Q562E7-4|WDR81 13.042465956692817 0.2476723265019929 1 [{I|L}T]D 3 -1 37.447 0 0 3.8035 0 0 0 652.3671024481546 652.3671024481546 33.46787486224656 0 0 0 0 1 2 0 0 [{I|L}T]D 3.8035 + + 9 NaN NaN 101074.5 NaN 7527 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10088 49.261 NaN 199260 35 0 21305 0.261 -1 0 59 526.2482968620022 1050.4820407908044 2 526.2485961914062 MULTI HCD FTMS 0 0 0 10081 60189.34765625 0.7958978736521986 2 -0.059261322021484375 7 NaN NaN 1 [Y{I|L}][KS]{NN|[MP]|[D{I|L}]|[EV]}SK 8 -1 20.64 0 0 1.9648 0 0 0 112.9667390307383 112.9667390307383 7.145096999615745 0 0 0 0 0.3807196863200844 1.6989700043360187 0.3494850021680094 0.5 [Y{I|L}][KS]{NN|[MP]|[D{I|L}]|[EV]}SK 1.9648 - 34 NaN NaN 128133.8 NaN 7528 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10089 49.264 NaN 113840 35 0 10861 0.261 -1 YPEGFEIHSM 10 54 613.2634398604836 1224.512326787767 2 613.263427734375 MULTI HCD FTMS 0 0 0 10081 45116.328125 0.13341334436083974 20 -0.5654869079589844 8 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 39.94969957227396 0.1458432724694501 1 YPE[HQ]EY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 + 58.707 0 0 4.7943 4.7943 89.478 0 0 0 37.02439355929528 9.449689600073441 9.449689600073441 25.115618994235682 0 0.3807196863200844 2 0.3807196863200844 0 YPE[HQ]EY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YPE[HQ][Y{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]} 4.7943;2.7432 -;- 138 + NaN NaN 113037.2 NaN 7529 2558 10081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10091 49.269 NaN 2682300 35 0 289960 0.327 + 24319 RYGLVTNEI 9 108 532.7902655802185 1063.5659782272369 2 532.7905883789062 MULTI HCD FTMS 0 0 0 10090 1407568.75 0.694822382208677 2 -0.0626983642578125 1 Unmodified _RYGLVTNEI_ ENSG00000115267|ENST00000649979|IFIH1 107.09958533191995 0.0034159042678574016 1 [Y{I|L}]GRVTNE{I|L} 9 2 + 82.775 0 0 7.7828 7.7828 91.106 0 0 0 10.338344929762059 16.478174818886373 10.338344929762059 9.208187539523749 0 1.1747425010840047 1.3979400086720375 0.6421590589602533 0.555462187404089 [Y{I|L}]GRVTNE{I|L};[Y{I|L}]GRVTGGE{I|L};[YR]G{I|L}VTNE{I|L};[Y{I|L}]GRVTEN{I|L};[YR]G{I|L}VTGGE{I|L};[Y{I|L}]G[VG]VTNKN;[Y{I|L}]GRVTEGG{I|L};[Y{I|L}]K{[RE]|[WV]}NE{I|L};[YR]G{I|L}VTEN{I|L};[Y{I|L}]GRVTE{I|L}N 7.7828;6.917;6.8107;6.2699;5.9449;5.4975;5.4041;5.397;5.2978;5.0855 -;-;+;-;-;-;-;-;-;- + 2623 NaN NaN 487937.8 NaN 7530 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10092 49.274 NaN 941080 35 0 239720 0.261 + 15427 LPDKTIASL 9 74 479.28447753019225 956.5544021271845 2 479.28436279296875 MULTI HCD FTMS 0 0 0 10090 644346.1875 0.8836419504418407 1 -0.0296478271484375 2 Unmodified _LPDKTIASL_ ENSG00000117625|ENST00000419091|RCOR3;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3 100.7086487251713 0.004245359191255521 1 {I|L}PDKT{I|L}AS{I|L} 9 0 + 101.37 0 0 10.597 10.597 90.388 0 0 0 17.46266423151775 2.4896393909512966 2.4896393909512966 2.4896393909512966 0 3.1237125054200234 1.5228787452803376 1.9731975075880328 0 + + {I|L}PDKT{I|L}AS{I|L};[{I|L}P]DKT{I|L}AS{I|L};[{I|L}P]DKTA{I|L}S{I|L};[DP]{I|L}KT{I|L}AS{I|L};[{I|L}P]DKTAS{I|L}{I|L};[{I|L}P]DKTSA{I|L}{I|L};[DP]K{I|L}T{I|L}AS{I|L};[DP]{I|L}KTA{I|L}S{I|L};[DP]K{I|L}TA{I|L}S{I|L};[DP]{I|L}KTAS{I|L}{I|L} 10.597;10.337;8.7867;7.732;7.6346;7.4505;6.9733;6.1819;5.4231;5.0298 +;+;-;-;-;-;-;-;-;- + 633 + NaN NaN 228296.8 NaN 7531 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10093 49.277 NaN 724440 35 0 41380 0.261 + 34244 YPDRIMNTF 9 93 586.7737018509798 1171.5328507687595 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10090 388478.59375 0.09702174743048343 36 -1.00933837890625 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 143.21322497773306 1.6000761055044888E-05 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 95.212 0 0 8.1271 8.1271 93.244 0 0 0 16.12524020767269 16.12524020767269 16.12524020767269 12.26280941356464 0 2.868415180652539 1.5228787452803376 1.7728787452803374 1.2000612056866313 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDC(Carbamidomethyl (C))KKNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPD[CG]KKNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F} 8.1271;7.0804;6.7507;6.2597;6.1598;5.9647;5.7562;5.4737;5.3738;5.362 +;-;+;-;-;-;-;-;-;- + 7123 + NaN NaN 205484.2 NaN 7532 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10094 49.281 NaN 412730 35 0 79392 0.261 + 19479 NPWPQGYVIE 10 58 601.7960351747483 1201.5775174162966 2 601.779296875 MULTI HCD FTMS 0 0 0 10090 22469.396484375 0.8264617477898675 -4 0.11187362670898438 4 Unmodified _NPWPQGYVIE_ ENSG00000119535|ENST00000373106|CSF3R;ENST00000464365.2_1_1:36934562-36941005:-|nuORF;ENST00000480825.6_1_1:36934562-36937301:-|nuORF;ENST00000487540.6_1_1:36933583-36937977:-|nuORF;nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R 10.073929032068715 0.4168838835836452 1 EMANVNK 7 9 51.63 0 0 4.2969 0 0 397.16746718574376 0 397.16746718574376 0 34.935333313191066 0 0 0 0 0 0.4247425010840047 0.7742275032520141 EMANVNK 4.2969 - 330 NaN NaN 147297.9 NaN 7533 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10095 49.284 NaN 299040 35 0 17370 0.261 + 24314 RYGLLTNEI 9 70 539.7973659217745 1077.5801789103489 2 539.7798461914062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RYGLLTNEI_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 13.042465956692817 0.2476723265019929 1 AKE{I|L}EE{NN|[MP]|[D{I|L}]|[EV]} 8 7 26.675 0 0 2.4754 0 0 132.13003121895548 0 132.13003121895548 0 8.248263515045618 0 0 0 0 0 0 0 AKE{I|L}EE{NN|[MP]|[D{I|L}]|[EV]} 2.4754 - 207 + NaN NaN 126754.1 NaN 7534 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10096 49.287 NaN 297110 35 0 30427 0.261 + 5813 FPCFQVRV 8 72 498.261358950232 994.5081649672641 2 498.2798156738281 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FPCFQVRV_ REV__ENSG00000204822|ENST00000258105|MRPL53;REV__MRPL53|p.V13A|1|0.09|ENSG00000204822|chr2:74472623-74472623|A/G|missense_variant 9.347437153973935 0.5250182646323369 1 [TA]{I|L} 3 -1 18.161 0 0 1.8261 0 0 0 706.3161538190797 706.3161538190797 1.8393875331894094 0 0 0 0 0 1.3979400086720375 0 0 [TA]{I|L} 1.8261 - 240 NaN NaN 138102 NaN 7535 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10097 49.291 NaN 161120 35 0 19500 0.261 + 22691 QYAAALLGALY 11 56 577.3163588096602 1152.6181646861203 2 577.3345947265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _QYAAALLGALY_ REV__ENSG00000157214|ENST00000394621|STEAP2;REV__nc|ENSG00000157214|Q8NFT2-2|STEAP2;REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2 5.731851221503515 0.39378271418728467 1 MV{M(Oxidation (M))|F}KQD 6 -1 35.891 0 0 3.1138 0 0 0 401.2192476861938 401.2192476861938 16.42667503568731 0 0 0 0 0 0 0.3494850021680094 0 MV{M(Oxidation (M))|F}KQD 3.1138 - 62 + NaN NaN 105464 NaN 7536 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10098 49.294 NaN 236520 35 0 33702 0.264 + 31726 VYLHDFQRF 9 64 408.87661604894333 1223.60801874703 3 408.8768615722656 MULTI HCD FTMS 0 0 0 10090 44051.359375 0.7431542010561257 1 -0.0296478271484375 8 Unmodified _VYLHDFQRF_ ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant 10.823927491677226 0.26684000660059787 1 VY 2 7 44.464 0 0 3.6338 0 0 0 958.4539710808326 958.4539710808326 28.979400086720375 0 0 0 0 0.3494850021680094 2 0 0 + VY 3.6338 + + 28 + NaN NaN 116765.2 NaN 7537 2559 10090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10100 49.299 NaN 1142600 35 0 214960 0.327 + 15242 LPAAGVGDMVM 11 94 546.7568773865822 1091.4992018399644 2 546.7569580078125 MULTI HCD FTMS 0 0 0 10099 706626.3125 0.8164125184849648 -10 0.2765083312988281 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 180.00974506902125 6.669720871725447E-14 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 113.51 0 0 10.4 10.4 95.452 0 0 0 13.30993219041423 5.752574989159939 5.752574989159939 11.575773191777927 0 3.774227503252014 1.154901959985743 1.1549471895720984 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}GG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A[VG]{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10.4;9.339;9.1802;8.6297;8.5128;8.1196;7.6732;7.2934;6.4537;5.9033 +;-;-;-;-;-;-;-;-;- + 1932 NaN NaN 256384.2 NaN 7538 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10101 49.303 NaN 556530 35 0 66863 0.263 + 4784 EYVEKFYRI 9 69 416.22019191672985 1245.6387463503895 3 416.220458984375 MULTI HCD FTMS 0 0 0 10099 115201.8671875 0.044126887715361676 17 -0.4865608215332031 2 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 1 [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 9 0 + 35.34 0 0 2.8371 2.8371 86.765 0 0 0 17.917112166456455 3.2568864632742915 3.2568864632742915 19.018637558036673 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}EV[C(Carbamidomethyl (C))N] 2.8371;1.3103 +;- + 178 + NaN NaN 170440 NaN 7539 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10102 49.307 NaN 318990 35 0 28695 0.261 + 13920 KYQKGFSLW 9 67 578.8111454505499 1155.6077379678998 2 578.811279296875 MULTI HCD FTMS 0 0 0 10099 190300.203125 0.8762103797639015 -3 0.08891677856445312 3 Unmodified _KYQKGFSLW_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 103.41943736471063 0.004016698775839292 1 KY{[CT]|[{M(Oxidation (M))|F}G]}Q{I|L}KSW 9 5 + 71.239 0 0 6.1646 6.1646 84.639 0 0 0 2.9932013953140455 2.9932013953140455 2.9932013953140455 2.9932013953140455 0 1.25 0 0.6109243748081782 0.8807196863200843 KY{[CT]|[{M(Oxidation (M))|F}G]}Q{I|L}KSW;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}S{M(Oxidation (M))|F}GKKSW;[YK]QKG{M(Oxidation (M))|F}S{I|L}W;KY{[CT]|[{M(Oxidation (M))|F}G]}QKS{I|L}W;[YQ]KKG{M(Oxidation (M))|F}S{I|L}W;KY{[CT]|[{M(Oxidation (M))|F}G]}QK{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}SK{I|L}QYKW;KYQKG{M(Oxidation (M))|F}S{I|L}W;KY{[CT]|[{M(Oxidation (M))|F}G]}[AG]{I|L}KSW;K[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}GKKSW 6.1646;5.9056;5.8415;5.7959;5.666;5.4665;5.3747;5.3697;5.3678;5.2391 -;-;+;-;-;-;-;+;-;- + 1625 + NaN NaN 138733.6 NaN 7540 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10103 49.311 NaN 244570 35 0 35810 0.263 + 2045 DEFEYCWDTF 10 46 452.16923641278333 1353.48587983855 3 452.1695556640625 MULTI HCD FTMS 0 0 0 10099 96059.4609375 0.6084503542049228 3 -0.08562088012695312 4 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 0.6976657623105312 0.47161084886498755 1 T{M(Oxidation (M))|F} 2 8 17.959 0 0 1.3269 0 0 1087.359709934887 0 1087.359709934887 0 12.474250108400469 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.3269 + + 26 + NaN NaN 133844.8 NaN 7541 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10104 49.314 NaN 484800 35 0 57610 0.261 + 4779 EYVEKFYRI 9 73 623.8270445852378 1245.6395362372755 2 624.3082275390625 MULTI HCD FTMS 0 0 0 10099 17776.16796875 0.04665215484676496 17 -0.4865608215332031 5 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 14.405379775768559 0.2358970535022398 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F} 9 6 50.684 0 0 4.0689 0 0 0 127.11214911516835 127.11214911516835 20.53395642852614 0 0 0 0 0 2 0 1.6861818737241734 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F} 4.0689 - 1156 NaN NaN 166637.1 NaN 7542 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10105 49.317 NaN 414440 35 0 79474 0.261 + 20151 NYKDLNGNVF 10 58 592.2908532918303 1182.5671536504606 2 592.291015625 MULTI HCD FTMS 0 0 0 10099 151554.234375 0.647423673930578 -2 0.059261322021484375 6 Unmodified _NYKDLNGNVF_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 59.05245873256422 0.044867740978679724 1 [YN]K{NN|[MP]|[D{I|L}]|[EV]}NGNV{M(Oxidation (M))|F} 10 0 + 88.99 0 0 7.5251 7.5251 90.038 0 0 0 24.25968732272281 69.45214013574144 24.25968732272281 9.164539485499262 0 2.1549471895720984 1.6989700043360187 0 0.805462187404089 + + [YN]K{NN|[MP]|[D{I|L}]|[EV]}NGNV{M(Oxidation (M))|F};[YN]K{NN|[MP]|[D{I|L}]|[EV]}NGGGV{M(Oxidation (M))|F};[YN]K{NN|[MP]|[D{I|L}]|[EV]}GGGNV{M(Oxidation (M))|F};[YN]K[SG][TP]GNV{M(Oxidation (M))|F};[YN][{I|L}T]AANGNV{M(Oxidation (M))|F};[YN][{I|L}T]QQGNV{M(Oxidation (M))|F} 7.5251;6.7501;6.7501;6.5592;6.0545;5.1392 +;-;-;-;-;- + 255 NaN NaN 144034.5 NaN 7543 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10106 49.32 NaN 312420 35 0 44414 0.261 + 19084 NETEFWKF 8 79 550.7577138022443 NaN 0 550.7435302734375 PEAK HCD FTMS 0 0 0 10099 5757.75146484375 0.42552497788091076 -2 0.059261322021484375 7 Unmodified _NETEFWKF_ REV__tr|U7SWX3|U7SWX3_FUSNUuroporphyrinogen-IIIC-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01206PE=4SV=1 10.823927491677226 0.38822285293237185 1 QAAW 4 -1 18.175 0 0 1.6531 0 0 165.10830839725787 475.1573580377563 640.2656664350142 0 0 0 0 0 0 0 0 0.4247425010840047 QAAW 1.6531 - 199 + NaN NaN 133679.1 NaN 7544 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10107 49.324 NaN 83436 35 0 9059.5 0.261 + 22557 QSHPGDFVL 9 39 500.24830259561094 998.4820522580219 2 500.2484130859375 MULTI HCD FTMS 0 0 0 10099 55755.69921875 0.9181421512112776 1 -0.033050537109375 8 Unmodified _QSHPGDFVL_ ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11;nc|ENSG00000179295|Q06124-3|PTPN11 14.838274106304384 0.23215694253501695 1 V{I|L} 2 7 25.969 0 0 2.6009 0 0 768.317186424025 0 768.317186424025 0 17.01667520279372 0 0 0 0.5 0 0 0 + V{I|L} 2.6009 + + 10 NaN NaN 95392.8 NaN 7545 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10108 49.327 NaN 109880 35 0 11619 0.261 + 15606 LPEAQPRQAR 10 47 583.3249821620964 NaN 0 583.3054809570312 PEAK HCD FTMS 0 0 0 10099 10533.015625 0.999551185558684 -1 0.0296478271484375 9 Unmodified _LPEAQPRQAR_ ENSG00000225614|ENST00000565624|ZNF469 6.2057823575117 0.3348729994311477 1 Y 1 10 5.4846 0 0 0.47092 0 0 791.434252798999 207.11408411197502 998.548336910974 0 0 0 0 0 0 0 0 0 Y 0.47092 - 8 + NaN NaN 110427.8 NaN 7546 2560 10099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10110 49.332 NaN 884430 35 0 67772 0.327 + 1347 AYPHNLMTF 9 79 555.2577483138126 1108.5009436944251 2 555.2579345703125 MULTI HCD FTMS 0 0 0 10109 486463.15625 0.33818791845995005 14 -0.3910026550292969 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 107.1870275148908 0.00340162908551068 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 88.84 0 0 8.0144 8.0144 93.068 0 0 0 24.76203644159419 58.55697099291227 24.76203644159419 12.26280941356464 0 2.1237125054200234 2 0.4247425010840047 0.3054621874040891 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DST{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DTS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[NV]|[RG]}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]HP{[ES]|[DT]|[{I|L}C]} 8.0144;6.9082;6.0358;6;4.7988;4.2235;3.3846;3.1805;3.1448;3.0804 -;-;-;-;-;-;-;-;-;- 2751 NaN NaN 215270.7 NaN 7547 2561 10109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10111 49.337 NaN 243100 35 0 51598 0.261 + 34629 YPQGQAPPL 9 46 485.75426420220094 969.4939754712019 2 485.7547912597656 MULTI HCD FTMS 0 0 0 10109 130012.3984375 1 0 0 2 Unmodified _YPQGQAPPL_ ENSG00000176986|ENST00000345254|SEC24C 21.74664581756881 0.17247014374749275 1 APP{I|L} 4 5 28.06 0 0 2.8943 0 0 573.2565925139738 0 573.2565925139738 0 12.575156255085389 0 0 0 1.1861818737241734 0 0 0 + APP{I|L} 2.8943 + + 49 + NaN NaN 124235.7 NaN 7548 2561 10109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10112 49.34 NaN 164550 35 0 12463 0.261 + 24528 RYLENQTFRF 10 47 458.57006629430316 1372.6883694831095 3 458.57000732421875 MULTI HCD FTMS 0 0 0 10109 19198.970703125 0.2781780455314577 1 -0.019664764404296875 3 Unmodified _RYLENQTFRF_ ENSG00000068796|ENST00000407818|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A 6.623454094837244 0.4402447091689353 1 {I|L} 1 9 13.979 0 0 1.0184 0 0 1241.59374775635 0 1241.59374775635 0 2.7422750325201406 0 0 0 0 0 0 0 + {I|L} 1.0184 + + 21 + NaN NaN 116852.4 NaN 7549 2561 10109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10113 49.343 NaN 179300 35 0 16826 0.261 + 20642 PFFSPIRM 8 47 497.7634659684844 NaN 0 497.7491760253906 PEAK HCD FTMS 0 0 0 10109 4408.7412109375 0.10640351736428277 6 -0.1643829345703125 4 Unmodified _PFFSPIRM_ REV__ENSG00000170776|ENST00000394518|AKAP13;REV__nc|ENSG00000170776|Q12802-2|AKAP13;REV__nc|ENSG00000170776|Q12802-4|AKAP13 5.760428011301431 0.38822285293237185 1 P 1 -1 5.4846 0 0 0.55204 0 0 147.09576767380355 746.339654630836 893.4354223046396 0 0 0 0 0 0 0 0 0 P 0.55204 + + 31 + NaN NaN 122460.1 NaN 7550 2561 10109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10114 49.347 NaN 204670 35 0 28706 0.261 + 7262 FTASRCKK 8 57 470.75601679448596 939.4974806557719 2 470.7554931640625 MULTI HCD FTMS 0 0 0 10109 63014.5390625 1 0 0 5 Unmodified _FTASRCKK_ REV__nc|ENSG00000154678|Q14123-3|PDE1C 2.577480529830294 0.5381683276125971 1 D 1 -1 3.4949 0 0 0.37199 0 0 329.29396239672616 492.1536043756469 821.4475667723731 0 0 0 0 0 0 0 0 0 D 0.37199 - 23 + NaN NaN 110498.1 NaN 7551 2561 10109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10116 49.352 NaN 1978300 35 0 177700 0.327 + 2671 DVHGPDWHL 9 99 538.2513849822252 1074.4882170312503 2 538.25146484375 MULTI HCD FTMS 0 0 0 10115 827016.75 0.1777926914710037 -5 0.141632080078125 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 136.33342141710068 0.00022087650154924235 1 DVHGPDWH{I|L} 9 0 + 94.848 0 0 8.8272 8.8272 89.179 0 0 0 3.0064848758090363 3.0064848758090363 3.0064848758090363 3.0064848758090363 0 2.9361818737241734 1.6989700043360187 1.0114393726401687 0 + + DVHGPDWH{I|L};[DV]HGPDWH{I|L};DVHGPD{I|L}[WH];[HV]DGPDWH{I|L};[DV]HGP[WH]D{I|L};{[HG]|PP}[DV]PDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};[HV]DGP[WH]D{I|L};[HV]SN[QT]GW{M(Oxidation (M))|F};[VS]HN[QT]GW{M(Oxidation (M))|F} 8.8272;8.5474;7.3161;7.1514;5;4.8259;4.5945;3.6039;2.5694;2.5694 +;+;-;-;-;-;-;-;-;- + 4560 + NaN NaN 392482.6 NaN 7552 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10117 49.356 NaN 195010 35 0 24814 0.261 + -1 LPDVEMMMT 9 55 557.7291772494826 NaN 0 557.747802734375 PEAK HCD FTMS 0 0 0 10115 12432.6025390625 0.7613376714461976 3 -0.08882522583007812 2 3 Oxidation (M) _LPDVEM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))T_ REV__ENSG00000183090|ENST00000329798|FREM3 7.910154910731844 0.25691533546754686 1 PAAG[HD]W 7 -1 28.148 0 0 2.528 0 0 113.04723218961779 263.0704439752563 376.11767616487407 0 0 0 0 0 0.7302046884880937 0 0 0 PAAG[HD]W 2.528 - 124 + NaN NaN 119193.1 NaN 7553 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10118 49.36 NaN 383240 35 0 26637 0.261 + 15234 LPAAGVGDMV 10 74 473.23908984485075 944.4636267565015 2 473.2395935058594 MULTI HCD FTMS 0 0 0 10115 132699.1875 0.9254294035941026 -2 0.052715301513671875 3 Oxidation (M) _LPAAGVGDM(Oxidation (M))V_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 81.61307344734483 0.003824874751935527 1 AGVGD{M(Oxidation (M))|F}V 7 3 51.847 0 0 5.4895 0 0 281.1733875959 0 281.1733875959 0 33.93662411326019 0 0 0 2.1861818737241734 0 0 0 + AGVGD{M(Oxidation (M))|F}V 5.4895 + + 380 NaN NaN 134579.8 NaN 7554 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10119 49.363 NaN 189460 35 0 19340 0.261 -1 PFEGVLMLHS 10 53 573.2864356518505 1144.558318370501 2 573.2723388671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _PFEGVLM(Oxidation (M))LHS_ SYTL5|p.R722H|1|0.48|ENSG00000147041|chrX:38126702-38126702|G/A|missense_variant 10.823927491677226 0.4098686510432541 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 3 -1 16.655 0 0 1.4552 0 0 0 768.3701829547384 768.3701829547384 0 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 1.4552 + + 21 NaN NaN 111057.3 NaN 7555 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10120 49.366 NaN 159740 35 0 33639 0.261 + 10933 IYATEAHVF 9 56 525.7663192648685 1049.5180855965368 2 525.7665405273438 MULTI HCD FTMS 0 0 0 10115 59888.30078125 1 0 0 5 Unmodified _IYATEAHVF_ ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1 57.47134341890925 0.0211188941628804 1 {I|L}YATE 5 4 75.305 0 0 7.1752 0 0 0 469.22040735416255 469.22040735416255 66.35274404843592 0 0 0 0 1.3807196863200843 1.6989700043360187 0.805462187404089 0 + {I|L}YATE 7.1752 + + 70 + NaN NaN 115275 NaN 7556 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10121 49.37 NaN 76298 35 0 10743 0.261 + 3088 EAINSDPEL 9 38 494.2355998449257 986.4566467566514 2 494.2351989746094 MULTI HCD FTMS 0 0 0 10115 43213.6015625 0.9158114680475014 1 -0.03290557861328125 6 Unmodified _EAINSDPEL_ ENSG00000165480|ENST00000314759|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;nc|ENSG00000165480|Q8IX90-3|SKA3 14.405379775768559 0.2358970535022398 1 HD[EP]{I|L} 5 5 17.932 0 0 1.8178 0 0 377.1890125959 0 377.1890125959 0 0.9421249706470292 0 0 0 0.5 0 0 0 HD[EP]{I|L} 1.8178 - 22 NaN NaN 94163.5 NaN 7557 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10122 49.373 NaN 147260 35 0 16577 0.261 + 27130 SYMLVNENRF 10 48 644.8032326844261 1287.5919124356521 2 644.803466796875 MULTI HCD FTMS 0 0 0 10115 37499.51953125 0.44586431859122905 -9 0.2469329833984375 7 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 46.0223103267499 0.09314584965737738 1 G{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 9 2 59.971 0 0 4.6576 0 0 193.07133598333422 0 193.07133598333422 0 39.0018312907727 0 0 0 1.774227503252014 0 0 0 G{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 4.6576 - 432 + NaN NaN 118136.6 NaN 7558 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10123 49.376 NaN 99246 35 0 7381.1 0.261 + -1 HFWILFCGM 9 45 605.7833400498262 NaN 0 605.7708129882812 PEAK HCD FTMS 0 0 0 10115 19429.91015625 0.8218009361219833 2 -0.05587005615234375 8 Carbamidomethyl (C) _HFWILFC(Carbamidomethyl (C))GM_ REV__ENST00000536398.5_1_12:109927798-109928349:+|nuORF 5.230669730166228 0.26989974671959066 1 SY{I|L}{M(Oxidation (M))|F} 4 -1 13.197 0 0 1.0911 0 0 166.04862022442427 530.2622164361936 696.310836660618 0 0 0 0 0 0 0 0 0 SY{I|L}{M(Oxidation (M))|F} 1.0911 - 39 + NaN NaN 107067.4 NaN 7559 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10124 49.38 NaN 141820 35 0 15274 0.261 -1 LYDLVTEKM 9 51 564.2862337059396 1126.557914478679 2 564.286376953125 MULTI HCD FTMS 0 0 0 10115 32393.822265625 0.8014345635086767 -1 0.019664764404296875 9 Oxidation (M) _LYDLVTEKM(Oxidation (M))_ ENSG00000120725|ENST00000394817|SIL1 21.590151480376914 0.17382222009858564 1 [Y{I|L}]D{I|L}VT[SG]{I|L}{M(Oxidation (M))|F} 10 -1 + 46.405 0 0 4.1192 4.1192 89.562 0 0 0 46.40478432233856 1.0379466712471697 1.0379466712471697 46.40478432233856 0 1.2302046884880937 2 0 0 [Y{I|L}]D{I|L}VT[SG]{I|L}{M(Oxidation (M))|F} 4.1192 - 19 + NaN NaN 101823.4 NaN 7560 2562 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10126 49.385 NaN 862050 35 0 101850 0.327 + 11232 IYLEKLKTI 9 85 560.8523235789221 1119.690094224644 2 560.8524169921875 MULTI HCD FTMS 0 0 0 10125 507278.65625 0.9655851280690185 1 -0.0229644775390625 1 Unmodified _IYLEKLKTI_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 117.83759599426817 0.001662893820975323 1 {I|L}Y{I|L}EK{I|L}KT{I|L} 9 0 + 121.67 0 0 10.866 10.866 97.622 0 0 0 67.0241453626535 23.00596010048038 23.00596010048038 23.55627050040694 0 3.079689690656103 2 2.705112052208703 0 + + {I|L}Y{I|L}EK{I|L}KT{I|L};[Y{I|L}]{I|L}EK{I|L}KT{I|L};[Y{I|L}]{I|L}EKK{I|L}T{I|L};[Y{I|L}]E{I|L}K{I|L}KT{I|L};[Y{I|L}]{I|L}T[VG]{I|L}KT{I|L};[Y{I|L}]E{I|L}KK{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}K{I|L}KT{I|L};[Y{I|L}]{I|L}T[VG]K{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}KK{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}K{I|L}Y{I|L}KT{I|L} 10.866;8.7626;7.7158;7.5613;6.8694;6.5144;6.2625;5.8226;5.2157;5.1808 +;+;-;-;-;-;-;-;-;- + 1166 + NaN NaN 210817.6 NaN 7561 2563 10125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10127 49.389 NaN 260960 35 0 17744 0.261 -1 MMTMERVL 8 65 529.7381822326274 1057.4618115320548 2 529.7384033203125 MULTI HCD FTMS 0 0 0 10125 137410.4375 0.8639460954932938 -4 0.11526870727539062 2 3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))TM(Oxidation (M))ERVL_ ENST00000487519.5_1_10:60155135-60155255:+|nuORF 28.486842064014134 0.3788298654084067 1 TV{I|L} 3 -1 36.427 0 0 3.4447 0 0 726.2515125959 0 726.2515125959 0 8.093859345357188 0 0 0 0.5 0 0.7614393726401688 0 TV{I|L} 3.4447 - 64 NaN NaN 144428.3 NaN 7562 2563 10125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10128 49.393 NaN 293500 35 0 32751 0.261 + 15309 LPAPIEKTI 9 58 491.3026597868747 980.5907666405494 2 491.3026123046875 MULTI HCD FTMS 0 0 0 10125 151660.65625 0.5499061288900365 -4 0.11526870727539062 3 Unmodified _LPAPIEKTI_ nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 67.83816525789305 0.009787749748478139 1 {I|L}PAP{[QN]|[E{I|L}]|[KN]}KT{I|L} 9 0 + 79.944 0 0 8.1526 8.1526 97.159 0 0 0 65.33986249165785 11.879617791072832 11.879617791072832 79.94395626141973 0 2.2302046884880937 1.5228787452803376 1.6549471895720984 0 + + {I|L}PAP{[QN]|[E{I|L}]|[KN]}KT{I|L} 8.1526 + + 99 + NaN NaN 133428.9 NaN 7563 2563 10125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10129 49.396 NaN 53730 35 0 5500.5 0.261 -1 VHMLVMVAL 9 33 514.7844599464566 1027.5543669597132 2 514.7846069335938 MULTI HCD FTMS 0 0 0 10125 18196.169921875 0.23772890791220266 5 -0.13806533813476562 4 Oxidation (M) _VHM(Oxidation (M))LVMVAL_ ENSG00000148734|ENST00000277942|NPFFR1 5.230669730166228 0.3113646817964458 1 V{I|L} 2 -1 20.969 0 0 2.0407 0 0 797.3908558576187 0 797.3908558576187 0 10.511525224473813 0 0 0 0 0 0 0 V{I|L} 2.0407 - 11 NaN NaN 88815.2 NaN 7564 2563 10125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10130 49.399 NaN 84736 35 0 7939.7 0.261 + 29492 TYVNRGRR 8 37 511.28708805084216 1020.5596231684843 2 511.28778076171875 MULTI HCD FTMS 0 0 0 10125 30789.59765625 1 0 0 5 Unmodified _TYVNRGRR_ ENSG00000001617|ENST00000002829|SEMA3F;nc|ENSG00000001617|Q13275-2|SEMA3F 12.531546534597751 0.5015908124873912 1 [YT]VS 4 5 43.94 0 0 4.3055 0 0 0 567.3270968072874 567.3270968072874 43.94016261540408 0 0 0 0 0.9247425010840047 2 0 0 [YT]VS 4.3055 - 24 + NaN NaN 111946.8 NaN 7565 2563 10125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10131 49.403 NaN 63934 35 0 4802.3 0.261 -1 DLWSTLCMIL 10 37 634.3087510935613 1266.6029492539226 2 634.3084106445312 MULTI HCD FTMS 0 0 0 10125 14055.47265625 0.43391415250494847 3 -0.08220291137695312 6 Carbamidomethyl (C),Oxidation (M) _DLWSTLC(Carbamidomethyl (C))M(Oxidation (M))IL_ ENSG00000148841|ENST00000337478|ITPRIP 3.2813086475875832 0.45793521633868084 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 16.198 0 0 1.2788 0 0 747.294725486525 0 747.294725486525 0 16.197887582883936 0 0 0 0 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.2788 - 2 NaN NaN 92219.7 NaN 7566 2563 10125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10133 49.408 NaN 1757700 35 0 287250 0.327 -1 MPETTETVL 9 71 518.7471805634126 1035.479808193625 2 518.7472534179688 MULTI HCD FTMS 0 0 0 10132 919206.8125 0.9005206157455112 -2 0.05587005615234375 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 36.12702656103203 0.08312389501731911 1 ETV{I|L} 4 -1 48.365 0 0 4.6707 0 0 575.2262440412125 0 575.2262440412125 0 34.38522701248628 0 0 0 1.0941876774005248 0 0.8494850021680094 0 ETV{I|L} 4.6707 + + 141 NaN NaN 356783.1 NaN 7567 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10134 49.412 NaN 752160 35 0 90613 0.261 + 28566 TPVDDRISL 9 84 508.27462204770234 1014.5346911622047 2 508.274658203125 MULTI HCD FTMS 0 0 0 10132 467683.25 0.7208647295591135 2 -0.059238433837890625 2 Unmodified _TPVDDRISL_ ENSG00000064703|ENST00000369702|DDX20 88.36371040165146 0.004568843997105255 1 TPVDDR{I|L}S{I|L} 9 0 + 97.189 0 0 9.5797 9.5797 92.568 0 0 0 9.05787502935297 9.05787502935297 9.05787502935297 9.05787502935297 0 2.809894379144197 1.5228787452803376 0.9247425010840047 0 + + TPVDDR{I|L}S{I|L};[TP]VDDR{I|L}S{I|L};TPVDDRS{I|L}{I|L};{[TV]|[{I|L}S]}PDDR{I|L}S{I|L};{I|L}SPDDR{I|L}S{I|L};[TP]VDDRVT{I|L};[VP]TDDR{I|L}S{I|L};TPVDD{[TV]|[{I|L}S]}R{I|L};{[TV]|[{I|L}S]}PDDRVT{I|L};TPV{[RE]|[WV]}[DV]S{I|L} 9.5797;8.6869;7.761;7.6787;7.3983;7.1694;7.1303;7.0595;6.1611;5.901 +;+;-;-;-;-;-;-;-;- + 768 + NaN NaN 199301.1 NaN 7568 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10135 49.416 NaN 932870 35 0 92662 0.261 + 24320 RYGLVTNEI 9 89 532.7902655802185 1063.5659782272369 2 532.7906494140625 MULTI HCD FTMS 0 0 0 10132 263586.8125 0.13011514853540324 7 -0.19720458984375 3 Unmodified _RYGLVTNEI_ ENSG00000115267|ENST00000649979|IFIH1 63.227496030279354 0.01306643085373406 1 [Y{I|L}]{[NV]|[RG]}VTNE{I|L} 9 2 + 73.126 0 0 6.8756 6.8756 89.557 0 0 0 18.529543537615183 49.17403451429223 18.529543537615183 9.208187539523749 0 1.6237125054200234 1.6989700043360187 0.2302046884880938 0.3494850021680094 [Y{I|L}]{[NV]|[RG]}VTNE{I|L};[Y{I|L}]{[NV]|[RG]}VTGGE{I|L};[Y{I|L}]{[NV]|[RG]}VTNKN;[Y{I|L}]{[NV]|[RG]}VTEN{I|L};[Y{I|L}]{I|L}[QA]TNKN;[Y{I|L}]K[PS]TNKN;[Y{I|L}]K{[RE]|[WV]}NE{I|L};[Y{I|L}]{[NV]|[RG]}VTGGKN;[Y{I|L}]{[NV]|[RG]}VTEGG{I|L};[YR]{[VA]|[{I|L}G]}VTNE{I|L} 6.8756;6.0098;5.8898;5.8819;5.2074;5.2074;5.1847;5.024;5.0162;4.9836 -;-;-;-;-;-;-;-;-;+ + 797 NaN NaN 241941.6 NaN 7569 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10136 49.419 NaN 351150 35 0 66697 0.261 + 15428 LPDKTIASL 9 69 479.28447753019225 956.5544021271845 2 479.2843322753906 MULTI HCD FTMS 0 0 0 10132 197350.4375 0.2706419761551714 6 -0.17093658447265625 4 Unmodified _LPDKTIASL_ ENSG00000117625|ENST00000419091|RCOR3;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3 63.227496030279354 0.01306643085373406 1 T{I|L}AS{I|L} 5 4 41.542 0 0 4.3429 0 0 453.25755507636876 0 453.25755507636876 0 24.98773768811723 0 0 0 0.8494850021680094 0 0.7614393726401688 0 + T{I|L}AS{I|L} 4.3429 + + 176 NaN NaN 148495.3 NaN 7570 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10137 49.422 NaN 382560 35 0 79618 0.261 + 3881 EPNPDDPLM 9 67 522.2210675061094 1042.4275820790187 2 522.2210083007812 MULTI HCD FTMS 0 0 0 10132 232684.609375 0.8091370705657575 6 -0.17093658447265625 5 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 60.07390631473393 0.0174780869009295 1 [EP]N[DP]DP{I|L}{M(Oxidation (M))|F} 9 0 + 38.434 0 0 3.687 3.687 85.055 0 0 0 19.561023749323557 3.430539093764331 3.430539093764331 9.208187539523752 0 1.5994850021680094 0 0 0 + + [EP]N[DP]DP{I|L}{M(Oxidation (M))|F};[EP]GG[DP]DP{I|L}{M(Oxidation (M))|F} 3.687;2.8037 +;- + 77 + NaN NaN 146660.8 NaN 7571 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10138 49.426 NaN 156990 35 0 48943 0.261 + 20793 PHEAESLAL 9 42 483.74824087871343 965.4819288242269 2 483.7479553222656 MULTI HCD FTMS 0 0 0 10132 62387.08203125 0.12975643824120223 8 -0.23345565795898438 6 Unmodified _PHEAESLAL_ ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD 11.640296217721598 0.25978676193971967 1 {I|L}A{I|L} 3 6 35.445 0 0 3.6713 0 0 650.2648182599625 0 650.2648182599625 0 22.346368802282015 0 0 0 0.9247425010840047 0 0 0 + {I|L}A{I|L} 3.6713 + + 17 NaN NaN 105735.5 NaN 7572 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10139 49.429 NaN 119440 35 0 16652 0.261 + 25631 SGRLLYPF 8 45 476.76631406675426 NaN 0 476.7764587402344 PEAK HCD FTMS 0 0 0 10132 5841.13134765625 0.26819398167266834 -1 0.0229644775390625 7 Unmodified _SGRLLYPF_ REV__ENSG00000135541|ENST00000265602|AHI1;REV__nc|ENSG00000135541|Q8N157-2|AHI1;REV__nc|ENSG00000135541|Q8N157-3|AHI1 2.8892196856762586 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.73458 0 0 131.0729126435753 704.3374177945756 835.4103304381508 0 0 0 0 0 0 0 0 0 {I|L} 0.73458 + + 4 + NaN NaN 101690.5 NaN 7573 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10140 49.432 NaN 222490 35 0 26763 0.261 + -1 FMYTSMDAM 9 49 564.7070346263025 1127.399516319405 2 564.7073364257812 MULTI HCD FTMS 0 0 0 10132 59431.359375 0.6567372378186094 -3 0.07553482055664062 8 2 Oxidation (M) _FMYTSM(Oxidation (M))DAM(Oxidation (M))_ REV__ENSG00000144852|ENST00000393716|NR1I2;REV__nc|ENSG00000144852|O75469-2|NR1I2;REV__nc|ENSG00000144852|O75469-3|NR1I2;REV__nc|ENSG00000144852|O75469-4|NR1I2;REV__nc|ENSG00000144852|O75469-5|NR1I2;REV__nc|ENSG00000144852|O75469-6|NR1I2;REV__nc|ENSG00000144852|O75469-7|NR1I2 2.0597508629832335 0.3354026079994024 1 [Y{I|L}]D 3 -1 18.952 0 0 1.6811 0 0 0 733.2021325827651 733.2021325827651 1.9627248839266578 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]D 1.6811 - 25 NaN NaN 111960.8 NaN 7574 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10141 49.436 NaN 95730 35 0 5935.2 0.263 + 35656 YYILSYEEAL 10 55 421.8765733280575 1262.6078905843724 3 421.87298583984375 MULTI HCD FTMS 0 0 0 10132 4412.28955078125 0.005697668639464194 -17 0.473907470703125 9 Unmodified _YYILSYEEAL_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 6.630372943996041 0.44020808660041416 1 G{M(Oxidation (M))|F} 2 10 20.969 0 0 1.6608 0 0 1040.5073637062458 0 1040.5073637062458 0 15.484550065040281 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.6608 - 9 + NaN NaN 97772.5 NaN 7575 2564 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10143 49.441 NaN 2238700 35 0 249130 0.327 + 15243 LPAAGVGDMVM 11 116 546.7568773865822 1091.4992018399644 2 546.75732421875 MULTI HCD FTMS 0 0 0 10142 792564.375 0.9157024950938436 -5 0.14154052734375 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 172.90653553480564 6.081434036535848E-09 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 98.995 0 0 9.0697 9.0697 91.503 0 0 0 2.9524904595219823 2.9524904595219823 2.9524904595219823 7.474250108400469 0 3.7034021960761265 1.3010299956639813 0.9802046884880937 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAGV[EC]SV{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQV[EC]SV{M(Oxidation (M))|F};[{I|L}P]AAM{[CP]|[EA]}GSV{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.0697;8.3849;8.2447;7.5732;7.4804;6.9675;6.9534;6.7336;6.399;6.2885 +;-;-;-;-;-;-;-;-;- + 4619 + NaN NaN 428397.2 NaN 7576 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10144 49.445 NaN 1698100 35 0 169350 0.261 -1 0 95 554.2461114594001 1106.4776699856002 2 554.2462158203125 MULTI HCD FTMS 0 0 0 10142 809485 0.9294278365781266 -2 0.055919647216796875 2 NaN NaN 1 DVHG{[ET]|[MV]}{M(Oxidation (M))|F} 7 -1 61.235 0 0 5.5342 0 0 0 318.12140833072505 318.12140833072505 26.3732053947289 0 0 0 0 0.9247425010840047 1.3979400086720375 1.2302046884880937 0 DVHG{[ET]|[MV]}{M(Oxidation (M))|F} 5.5342 - 2452 + NaN NaN 342691.7 NaN 7577 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10145 49.449 NaN 598190 35 0 35608 0.261 + 34245 YPDRIMNTF 9 88 586.7737018509798 1171.5328507687595 2 586.7741088867188 MULTI HCD FTMS 0 0 0 10142 314654.1875 0.07858425045477548 42 -1.1740837097167969 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 132.13456570155267 0.00047552052208015726 1 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 90.678 0 0 7.7401 7.7401 88.071 0 0 0 4.032417431815233 4.032417431815233 4.032417431815233 4.032417431815233 0 3.0994850021680094 1.2218487496163564 1.7491348669726232 0.8703715150305281 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};EMDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 7.7401;7.3959;6.8782;6.6934;6.6099;6.3423;6.1933;6.0922;5.8657;5.4073 +;+;-;-;-;-;-;-;-;- + 3320 + NaN NaN 184812.8 NaN 7578 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10146 49.452 NaN 453030 35 0 89383 0.261 + 2145 DGFPQLFHIE 10 70 601.7960351747483 1201.5775174162966 2 601.7791748046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _DGFPQLFHIE_ REV__ENSG00000134987|ENST00000513710|WDR36;REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF;REV__nc|ENSG00000134987|Q8NI36|WDR36;REV__WDR36-GPNMB|1|fusion;REV__WDR36-GPNMB|2|fusion 10.073929032068715 0.4168838835836452 1 {[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}ANVNK 10 -1 + 46.438 0 0 3.8647 3.8647 83.822 0 0 0 10.522562268522577 31.74487929526329 10.522562268522577 9.164539485499247 0 0 0 0.3252574989159953 0.7302046884880937 {[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}ANVNK;{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}ANVGGK;{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}AGGVNK;{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}AGGVGGK;{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}A[KG][RN];{NN|[MP]|[D{I|L}]|[EV]}[YG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{M(Oxidation (M))|F}NK;{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}A[KG]AAK;{[QN]|[E{I|L}]|[KN]}M[NG]YSY{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}[KQ][RN];{[QN]|[E{I|L}]|[KN]}MH{M(Oxidation (M))|F}A[QT]{I|L}{I|L} 3.8647;3.102;3.102;2.3423;0.67263;0.53085;0.51657;0.38789;0.37953;0.36638 -;-;-;-;-;-;-;-;-;- 660 NaN NaN 154597.2 NaN 7579 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10147 49.455 NaN 928850 35 0 48856 0.263 -1 0 98 473.21859967057094 944.4226464079419 2 473.2185974121094 MULTI HCD FTMS 0 0 0 10142 290496.09375 0.7641473140633439 -1 0.032955169677734375 5 NaN NaN 1 [DV]H[VS]GHV 8 -1 22.829 0 0 2.4172 0 0 0 110.99901837612245 110.99901837612245 2.124040151445339 0 0 0 0 0.4247425010840047 1.6989700043360187 0.2742275032520141 0 [DV]H[VS]GHV 2.4172 - 1702 NaN NaN 226680.7 NaN 7580 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10148 49.459 NaN 182120 35 0 15396 0.261 + 22525 QSCLPTQLVCP 11 53 594.7913235729684 NaN 0 594.80615234375 PEAK HCD FTMS 0 0 0 10142 6947.65673828125 0.29704224125419754 -1 0.032955169677734375 6 Unmodified _QSCLPTQLVCP_ REV__ENSG00000179627|ENST00000342537|ZBTB42 2.498486711656943 0.3350326561941647 1 M 1 -1 4.6041 0 0 0.38769 0 0 61.97121099599014 991.5413912408811 1053.5126022368713 0 0 0 0 0 0 0 0 0 M 0.38769 - 1 + NaN NaN 114500.3 NaN 7581 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10149 49.462 NaN 72463 35 0 6173.3 0.261 + 34350 YPEGFEIHSM 10 43 613.2633828160687 1224.5122126989372 2 613.2630615234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 56.17704186161178 0.05532499666593632 1 YPE 3 7 56.287 0 0 4.5966 0 0 0 832.3318575494749 832.3318575494749 39.00637524615391 0 0 0 0 0.7614393726401688 1.3979400086720375 0.8494850021680094 0 + YPE 4.5966 + + 47 + NaN NaN 105097.2 NaN 7582 2565 10142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10151 49.467 NaN 527760 35 0 58798 0.327 + 4780 EYVEKFYRI 9 82 623.8270445852378 1245.6395362372755 2 624.3082885742188 MULTI HCD FTMS 0 0 0 10150 17332.498046875 0.04548777802873807 21 -0.5949325561523438 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 6.630372943996041 0.3007538891620783 1 YNEN{I|L}VHME 9 8 53.575 0 0 4.301 0 0 98.10368615854175 0 98.10368615854175 0 -4.42319511854857 -4.42319511854857 0 0 0.1861818737241735 0 0.9392404878284264 0.9634679910804405 YNEN{I|L}VHME 4.301 - 1802 + NaN NaN 158055.8 NaN 7583 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10152 49.471 NaN 278370 35 0 35741 0.261 + 20152 NYKDLNGNVF 10 75 592.2908532918303 1182.5671536504606 2 592.2908935546875 MULTI HCD FTMS 0 0 0 10150 120522.5625 0.5148596509168153 4 -0.11169815063476562 2 Unmodified _NYKDLNGNVF_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 55.23464941255904 0.058752269732683056 1 [YN]K{NN|[MP]|[D{I|L}]|[EV]}N[NG]V{M(Oxidation (M))|F} 10 0 + 67.29 0 0 5.6902 5.6902 91.207 0 0 0 17.47425010840047 16.53212513775344 16.53212513775344 27.61200801262669 0 2.1237125054200234 2 0 1.0189301784845295 + + [YN]K{NN|[MP]|[D{I|L}]|[EV]}N[NG]V{M(Oxidation (M))|F};[YN][RN]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GW;[YN]K[SG][QP]{M(Oxidation (M))|F}G[VS];[YN]K[SG][QP]N[Y{I|L}];{[CT]|[{M(Oxidation (M))|F}G]}{[RE]|[WV]}[HM]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]}K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}{[RE]|[WV]}[C(Carbamidomethyl (C))K]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}[RN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.6902;3.3552;2.6961;2.1136;1.0946;0.93341;0.81839;0.49229 +;-;-;-;-;-;-;- + 626 NaN NaN 138415.5 NaN 7584 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10153 49.475 NaN 227150 35 0 13290 0.261 + 13921 KYQKGFSLW 9 72 578.8111454505499 1155.6077379678998 2 578.8111572265625 MULTI HCD FTMS 0 0 0 10150 101824 0.46883421165071076 3 -0.0821380615234375 3 Unmodified _KYQKGFSLW_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 89.40071534611396 0.0045416704840156395 1 [YK]QK[YQ]{I|L}W 8 3 + 47.036 0 0 4.0702 4.0702 83.854 0 0 0 3.7200705902944833 8.535605054892187 3.7200705902944833 8.907854813243986 0 1.274227503252014 0 0 1.2689301784845295 [YK]QK[YQ]{I|L}W;[YK]QK[{M(Oxidation (M))|F}E]KW;[YK][AG]K[YQ]{I|L}W;[YK]Q{I|L}[YQ]KW;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[YQ]KSKW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG]K[YQ]{I|L}W;[YK][AG]K[{M(Oxidation (M))|F}E]KW;[YK][AG]{I|L}[YQ]KW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG]K[{M(Oxidation (M))|F}E]KW;{[CT]|[{M(Oxidation (M))|F}G]}K[{M(Oxidation (M))|F}E]K[KS]W 4.0702;3.2994;3.2687;3.147;2.8753;2.6882;2.4979;2.3455;1.9174;1.8942 -;-;-;-;-;-;-;-;-;- 405 NaN NaN 119911.9 NaN 7585 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10154 49.478 NaN 811290 35 0 68746 0.261 + 4186 ETTVYVIVR 9 83 540.3081792889126 1078.601805644625 2 540.307861328125 MULTI HCD FTMS 0 0 0 10150 177968.234375 0.6180110426250884 -2 0.059238433837890625 4 Unmodified _ETTVYVIVR_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 53.832793166522166 0.026208976789938845 1 {[ET]|[MV]}TVYV{I|L}VR 9 0 + 58.396 0 0 5.414 5.414 91.251 0 0 0 13.257659435244733 16.478174818886373 13.257659435244733 36.79297219607513 0 0.9802046884880938 0 0 0 + + {[ET]|[MV]}TVYV{I|L}VR;{[ET]|[MV]}T{I|L}{I|L}[{M(Oxidation (M))|F}T]VR;[DP]TVYKK[KT];[PS]EVYKK[KT] 5.414;2.0028;1.4776;0.27135 +;-;-;- + 1187 + NaN NaN 221060.5 NaN 7586 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10155 49.482 NaN 353710 35 0 67742 0.261 + 8273 GVAPFTIAR 9 39 466.27158601625194 930.5286190993039 2 466.27166748046875 MULTI HCD FTMS 0 0 0 10150 150451.671875 0.8422176682686946 -2 0.059238433837890625 5 Unmodified _GVAPFTIAR_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 47.748688679222035 0.03472022231463587 1 [VG]AP 4 5 41.427 0 0 4.452 0 0 0 603.3291109674436 603.3291109674436 20.012262311882765 0 0 0 0 1 1.5228787452803376 0 0 + [VG]AP 4.452 + + 14 + NaN NaN 134451.3 NaN 7587 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10156 49.485 NaN 190980 35 0 17639 0.261 + 26642 SWYSPDAKF 9 55 550.7577138022443 NaN 0 550.7435913085938 PEAK HCD FTMS 0 0 0 10150 5049.7900390625 0.37320329086723214 3 -0.0821380615234375 6 Unmodified _SWYSPDAKF_ ENSG00000132824|ENST00000342374|SERINC3;nc|ENSG00000132824|Q13530-2|SERINC3;SERINC3|p.Q434E|1|0.5|ENSG00000132824|chr20:44500418-44500418|G/C|missense_variant 7.289230182591677 0.2599242500475609 1 WQ 2 8 11.836 0 0 1.0765 0 0 165.10931588271632 617.2315157525999 782.3408316353161 0 0 0 0 0 0 0 0 0.3252574989159953 WQ 1.0765 - 52 + NaN NaN 113607.4 NaN 7588 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10157 49.488 NaN 206160 35 0 31538 0.261 + 19069 NEIYQSFSQL 10 49 614.7944792018801 1227.5744054705601 2 614.79443359375 MULTI HCD FTMS 0 0 0 10150 86227.953125 0.6038742749330617 -2 0.059238433837890625 7 Unmodified _NEIYQSFSQL_ REV__ENSG00000115504|ENST00000431489|EHBP1;REV__nc|ENSG00000115504|Q8NDI1-2|EHBP1;REV__nc|ENSG00000115504|Q8NDI1|EHBP1 24.990960013464015 0.27735500881591096 1 Q{I|L}SQ{I|L} 5 -1 60.261 0 0 4.9089 0 0 640.2433949201187 0 640.2433949201187 0 53.2711470149615 0 0 0 1.805462187404089 0 0.4247425010840047 0 Q{I|L}SQ{I|L} 4.9089 - 44 NaN NaN 125531.6 NaN 7589 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10158 49.491 NaN 190810 35 0 13778 0.263 + 8253 GTDAHPLLF 9 59 485.75426420220094 969.4939754712019 2 485.7455749511719 MULTI HCD FTMS 0 0 0 10150 39886.5703125 0.30679051222698894 5 -0.13796615600585938 8 Unmodified _GTDAHPLLF_ ENSG00000180042|ENST00000572493|OR1R1P 16.942295170755138 0.21397866736869717 1 {[SA]|[TG]}DS{I|L}EA 7 5 35.851 0 0 3.6979 0 0 0 293.16413294010005 293.16413294010005 21.246593453864463 0 0 0 0 0.4247425010840047 0 0.28872548999643577 0 {[SA]|[TG]}DS{I|L}EA 3.6979 - 105 + NaN NaN 117060.8 NaN 7590 2566 10150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10160 49.496 NaN 7637300 35 0 641990 0.327 + 2672 DVHGPDWHL 9 125 538.2513849822252 1074.4882170312503 2 538.2517700195312 MULTI HCD FTMS 0 0 0 10159 4651579 1 0 0 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 164.5152109175784 6.8106583686994766E-09 1 DVHGPDWH{I|L} 9 0 + 99.979 0 0 9.3048 9.3048 89.388 0 0 0 2.159190287783801 2.159190287783801 2.159190287783801 2.159190287783801 0 3.0669015600442577 1.5228787452803376 1.2689301784845295 0 + + DVHGPDWH{I|L};[DV]HGPDWH{I|L};[HV]DGPDWH{I|L};[DV]HGP[WH]D{I|L};{[HG]|PP}[DV]PDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};[DV]HGP[WH]{I|L}D;[HV]DGP[WH]D{I|L};[HV]DGP[WH]{I|L}D;[DV]H[PA]WHVD 9.3048;9.1039;7.8292;5.595;5.5446;5.0901;4.7545;4.3202;3.4798;3.2169 +;+;-;-;-;-;-;-;-;- + 5447 + NaN NaN 915711.8 NaN 7591 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10161 49.501 NaN 1553900 35 0 373320 0.263 + 3648 ELKELLNNLF 10 69 411.5677977526689 1231.6815638582068 3 411.5679931640625 MULTI HCD FTMS 0 0 0 10159 496769.1875 0.2784519384873399 -4 0.11181259155273438 2 Unmodified _ELKELLNNLF_ tr|U7SHZ2|U7SHZ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02205PE=4SV=1 7.945399516374404 0.4332474418965133 1 RD[PG]{I|L}{M(Oxidation (M))|F} 6 8 41.63 0 0 3.3799 0 0 528.3036366193375 0 528.3036366193375 0 22.165762445130497 0 0 0 1.9247425010840047 0 0 0.3252574989159953 RD[PG]{I|L}{M(Oxidation (M))|F} 3.3799 - 141 NaN NaN 333199 NaN 7592 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10162 49.505 NaN 442550 35 0 89348 0.261 + 5364 FGHAEVVSL 9 64 479.7532482230337 957.4919435128675 2 479.75347900390625 MULTI HCD FTMS 0 0 0 10159 229443.578125 0.9732172201864188 -1 0.02960968017578125 3 Unmodified _FGHAEVVSL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 46.020951573049366 0.037705236580089195 1 QQVVS{I|L} 6 5 52.083 0 0 5.4396 0 0 285.11058242011876 0 285.11058242011876 0 25.885540741363187 0 0 0 1.3807196863200843 0 0.3494850021680094 0 QQVVS{I|L} 5.4396 - 249 NaN NaN 154770.4 NaN 7593 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10163 49.508 NaN 538740 35 0 71764 0.261 + 4785 EYVEKFYRI 9 67 416.22019191672985 1245.6387463503895 3 416.5547180175781 MULTI HCD FTMS 0 0 0 10159 67723.2734375 0.035630164425760676 24 -0.6704330444335938 4 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 1 [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 9 0 + 35.34 0 0 2.8371 2.8371 88.062 0 0 0 19.67802475701327 3.2568864632742915 3.2568864632742915 35.33986249165786 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 2.8371 + + 76 + NaN NaN 166378.3 NaN 7594 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10164 49.511 NaN 487060 35 0 60757 0.261 + 25439 SESLFVSNHAY 11 62 627.293763665603 1252.572974398006 2 627.2935791015625 MULTI HCD FTMS 0 0 0 10159 223017.359375 0.5437380176090052 -3 0.08884811401367188 5 Unmodified _SESLFVSNHAY_ ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 162.31443362245884 2.170374855332124E-08 1 {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY 11 0 + 102.78 0 0 8.2051 8.2051 90.481 0 0 0 6.738773680566268 6.738773680566268 6.738773680566268 8.010299956639813 0 3.9049471895720984 0 2.5669015600442577 0.28872548999643577 + + {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY;{[MG]|[TS]}D{I|L}{M(Oxidation (M))|F}VSNHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSGGHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}[SG][VG]HAY;{[ES]|[DT]|[{I|L}C]}S{[WT]|[RM]}V{M(Oxidation (M))|F}[QA][QA];{[ES]|[DT]|[{I|L}C]}S{I|L}[YQ][VG]HAY;{[ES]|[DT]|[{I|L}C]}{[WT]|[RM]}SV{M(Oxidation (M))|F}[QA][QA];{[MG]|[TS]}D{[WT]|[RM]}V{M(Oxidation (M))|F}[QA][QA];{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[QA][QA];{[MG]|[TS]}[WE]SV{M(Oxidation (M))|F}[QA][QA] 8.2051;7.5656;6.6787;4.4399;3.9243;3.6081;3.5251;3.2848;2.9548;2.6259 +;-;-;-;-;-;-;-;-;- + 670 NaN NaN 163599.9 NaN 7595 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10165 49.514 NaN 211690 35 0 28825 0.261 -1 IPPSNNYYM 9 55 557.747745756273 1113.480938579346 2 557.7474975585938 MULTI HCD FTMS 0 0 0 10159 112690.296875 0.9704082610209647 -2 0.0558929443359375 6 Oxidation (M) _IPPSNNYYM(Oxidation (M))_ ENSG00000065970|ENST00000162391|FOXJ2;nc|ENSG00000065970|Q9P0K8-2|FOXJ2 13.90604991867851 0.24021115267848145 1 {I|L}PAAGV 6 -1 73.18 0 0 6.5722 0 0 0 602.1570694393212 602.1570694393212 47.96388461952553 0 0 0 0 1.805462187404089 1.3979400086720375 0 0 {I|L}PAAGV 6.5722 - 162 + NaN NaN 111919.5 NaN 7596 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10166 49.518 NaN 182690 35 0 14154 0.261 + 29745 VDSLEGEDFE 10 55 570.2412302165203 1138.4679074998405 2 570.2412109375 MULTI HCD FTMS 0 0 0 10159 91508.7265625 1 0 0 7 Unmodified _VDSLEGEDFE_ ENSG00000163596|ENST00000358299|ICA1L 6.723162845929126 0.4397169348982109 1 VD 2 8 20.969 0 0 1.8419 0 0 906.3632365626761 0 906.3632365626761 0 2.7815125038364386 0 0 0 0 0 0 0 + VD 1.8419 + + 127 NaN NaN 129373.2 NaN 7597 2567 10159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10168 49.523 NaN 728310 35 0 56258 0.327 + 14171 LAIDTEERL 9 81 530.2877182109131 1058.5608834886261 2 530.287841796875 MULTI HCD FTMS 0 0 0 10167 247293.3125 1 0 0 1 Unmodified _LAIDTEERL_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 71.70789743142352 0.008535567138151097 1 {I|L}A{I|L}DTEER{I|L} 9 0 + 94.594 0 0 8.9361 8.9361 96.572 0 0 0 73.96836304267161 8.256886463274284 8.256886463274284 26.907365922476814 0 2.4049471895720984 1.6989700043360187 1.274227503252014 0 + + {I|L}A{I|L}DTEER{I|L};[{I|L}A]{I|L}DTEER{I|L};[{I|L}A]{I|L}DT[NG][TA]A{I|L};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}A]TEER{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}A{I|L}{I|L} 8.9361;6.3942;5.2961;3.4203;1.44;1.1557 +;+;-;-;-;- + 842 + NaN NaN 191527.7 NaN 7598 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10169 49.527 NaN 305960 35 0 15363 0.261 + -1 MKSRLTNM 8 73 498.7520196989769 NaN 0 498.7669677734375 PEAK HCD FTMS 0 0 0 10167 6395.6591796875 0.29861326170797087 -1 0.02625274658203125 2 Oxidation (M) _MKSRLTNM(Oxidation (M))_ REV__POTEE|p.K55N|1|0.26|ENSG00000188219|chr2:131218567-131218567|G/T|missense_variant 15.847184025352803 0.3871869056683869 1 VWQTAN 6 -1 34.078 0 0 3.4232 0 0 131.05645162814625 162.0558260553344 293.11227768348067 0 0 0 0 0 0 0 0 1.4436726795685342 VWQTAN 3.4232 - 141 + NaN NaN 134619.5 NaN 7599 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10170 49.531 NaN 383790 35 0 36438 0.261 + 24783 RYPDRITLI 9 69 573.8350666957131 1145.655580458226 2 573.8348388671875 MULTI HCD FTMS 0 0 0 10167 88112.296875 0.03742364873187213 -6 0.17097091674804688 3 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 21.536976647645854 0.1742816388551942 1 RYC(Carbamidomethyl (C)) 3 7 19.213 0 0 1.6771 0 0 0 663.4410494440061 663.4410494440061 4.458865705675878 0 0 0 0 0.3807196863200844 0 0 0 RYC(Carbamidomethyl (C)) 1.6771 - 110 + NaN NaN 148045.4 NaN 7600 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10171 49.534 NaN 270830 35 0 111070 0.262 -1 FLREYVLFPMD 11 23 482.5765637410455 NaN 0 482.5768127441406 PEAK HCD FTMS 0 0 0 10167 47924.859375 0.797648811923158 -1 0.02625274658203125 4 Oxidation (M) _FLREYVLFPM(Oxidation (M))D_ ENSG00000152104|ENST00000366956|PTPN14 2.843284757254958 0.33405456343542356 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.72572 0 0 112.73191058580353 700.317093868383 813.0490044541866 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.72572 + + 2 + NaN NaN 135935.8 NaN 7601 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10172 49.537 NaN 110430 35 0 8973.5 0.261 + 9778 HYKPTPLYF 9 55 583.3056984234008 1164.5968439136016 2 583.30517578125 MULTI HCD FTMS 0 0 0 10167 58872.55078125 0.053834231931862916 66 -1.8778038024902344 5 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 26.268140514670165 0.13340543277302316 1 Y{M(Oxidation (M))|F} 2 7 25.969 0 0 2.2299 0 0 836.4587148114733 0 836.4587148114733 0 7.028937514676485 0 0 0 0.5 0 0 0 + Y{M(Oxidation (M))|F} 2.2299 + + 69 NaN NaN 100398.7 NaN 7602 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10173 49.541 NaN 212610 35 0 11020 0.261 + -1 IRPRYQLVM 9 70 596.3354518651555 1190.656350797111 2 596.3348999023438 MULTI HCD FTMS 0 0 0 10167 33818.0546875 0.7975856360879913 4 -0.11835479736328125 6 Oxidation (M) _IRPRYQLVM(Oxidation (M))_ REV__ENSG00000180628|ENST00000336126|PCGF5 4.3292370932331545 0.3181982124262546 1 RY 2 -1 16.198 0 0 1.3604 0 0 0 868.4668356595022 868.4668356595022 0.5849157210216198 0 0 0 0 0 0 0 0 RY 1.3604 + + 185 + NaN NaN 128104.6 NaN 7603 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10174 49.544 NaN 203560 35 0 19162 0.263 + 23548 RPAVLDPAL 9 59 476.28474625740597 950.554939581612 2 476.28533935546875 MULTI HCD FTMS 0 0 0 10167 40587.28125 0.2738695072662898 -3 0.08214569091796875 7 Unmodified _RPAVLDPAL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 16.149105407346934 0.22083165093524068 1 {I|L}DPA{I|L} 5 4 42.321 0 0 4.4522 0 0 423.25947768379064 0 423.25947768379064 0 28.34121882396211 0 0 0 0.8252574989159953 0 0 0 + {I|L}DPA{I|L} 4.4522 + + 39 NaN NaN 118202.5 NaN 7604 2568 10167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10176 49.549 NaN 1722600 35 0 289440 0.327 + 18318 MPETTETVL 9 71 518.7471805634126 1035.479808193625 2 518.7471923828125 MULTI HCD FTMS 0 0 0 10175 940969.8125 0.9218412042071743 3 -0.09207916259765625 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 43.85829265575387 0.04763305254408404 1 [QA]TC(Carbamidomethyl (C))PETV{I|L} 9 5 [QA]TC(Carbamidomethyl (C))P + + 47.295 -8.2745 -1.4385 4.5674 4.5674 60.864 0 0 0 0 33.80001899740286 0 0 0 1.035666875892183 0 0.8494850021680094 0 [QA]TC(Carbamidomethyl (C))PETV{I|L} 4.5674 - 118 NaN NaN 342113.2 NaN 7605 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10177 49.553 NaN 381440 35 0 39617 0.261 + 15310 LPAPIEKTI 9 64 491.3026597868747 980.5907666405494 2 491.3026428222656 MULTI HCD FTMS 0 0 0 10175 195836.859375 0.7100845525511085 2 -0.055828094482421875 2 Unmodified _LPAPIEKTI_ nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 76.82478488871298 0.006879825292024087 1 {I|L}PAP{[QN]|[E{I|L}]|[KN]}KT{I|L} 9 0 + 82.118 0 0 8.3744 8.3744 94.865 0 0 0 57.927236961206 11.439389643433628 11.439389643433628 17.839322000954283 0 2.4916440611282624 1.5228787452803376 1.610924374808178 0 + + {I|L}PAP{[QN]|[E{I|L}]|[KN]}KT{I|L};[{I|L}P]AP{[QN]|[E{I|L}]|[KN]}KT{I|L};[{I|L}P]ASV[{I|L}T]AP{I|L};[{I|L}P]ASV[PA]{I|L}T{I|L};[{I|L}P]ASV[TA]{I|L}P{I|L};[PA]{I|L}P{[QN]|[E{I|L}]|[KN]}KT{I|L};[PA]{I|L}SV[{I|L}T]AP{I|L};[PA]{I|L}SV[PA]{I|L}T{I|L};[{I|L}T][PG]V[{I|L}T]AP{I|L};[PA]{I|L}SV[TA]{I|L}P{I|L} 8.3744;6.5551;5.486;5.4366;4.8721;3.7794;2.7103;2.6609;2.1197;2.0963 +;+;-;-;-;-;-;-;-;- + 338 + NaN NaN 134479.8 NaN 7606 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10178 49.557 NaN 602030 35 0 75835 0.261 + 18936 NAFKEITTM 9 75 527.7665705405707 1053.5185881479413 2 527.7655029296875 MULTI HCD FTMS 0 0 0 10175 262797.40625 0.5892882957609519 -2 0.05252838134765625 3 Unmodified _NAFKEITTM_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 103.41943736471063 0.004016698775839292 1 {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TTM 9 0 + 78.427 0 0 7.4442 7.4442 88.538 0 0 0 63.10911268361153 10.457574905606748 10.457574905606748 6.197887582883936 0 2.517220322351953 1.6989700043360187 0.6421590589602533 0 + + {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TTM;{[QG]|[NA]}{M(Oxidation (M))|F}[VG]T{I|L}TTM;{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}SV{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}RMR{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}[VG]T{I|L}SV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}M[KQ]{I|L}TTM;{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}EK[NS]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}E[VP]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}E{[ES]|[DT]|[{I|L}C]}{I|L}{I|L};{[DS]|[MA]|[CV]|TT}M[KQ]{I|L}W{M(Oxidation (M))|F} 7.4442;6.8559;5.7643;5.233;5.176;4.6522;3.0444;2.2;2.1884;1.622 +;-;-;-;-;-;-;-;-;- + 691 + NaN NaN 174038.7 NaN 7607 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10179 49.56 NaN 541520 35 0 75790 0.261 -1 MPVMEQSVL 9 77 533.2514325788982 1064.4883122245963 2 533.2514038085938 MULTI HCD FTMS 0 0 0 10175 146470.703125 0.5316238834431029 14 -0.4044036865234375 4 2 Oxidation (M) _M(Oxidation (M))PVM(Oxidation (M))EQSVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 22.736283301280096 0.1639198954644489 1 N{M(Oxidation (M))|F}NTN{I|L}M 7 -1 33.607 0 0 3.1571 0 0 0 227.14048181705314 227.14048181705314 4.934560341220617 0 0 0 0 0.3807196863200844 0 0 0.25 N{M(Oxidation (M))|F}NTN{I|L}M 3.1571 - 550 + NaN NaN 175031.7 NaN 7608 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10180 49.564 NaN 138970 35 0 17296 0.261 + 27131 SYMLVNENRF 10 44 644.8032326844261 1287.5919124356521 2 644.8035888671875 MULTI HCD FTMS 0 0 0 10175 81423.90625 0.9681194567556695 -2 0.05252838134765625 5 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 46.0223103267499 0.09314584965737738 1 G{M(Oxidation (M))|F}{I|L}VGGENR{M(Oxidation (M))|F} 10 4 65.539 0 0 5.09 0 0 193.07107667045108 0 193.07107667045108 0 63.54934083125073 0 0 0 1.774227503252014 0 0 0.3807196863200844 G{M(Oxidation (M))|F}{I|L}VGGENR{M(Oxidation (M))|F} 5.09 - 177 + NaN NaN 106022.6 NaN 7609 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10181 49.567 NaN 85821 35 0 28127 0.261 -1 ESEHSMDTLL 10 29 589.2554832117141 1176.4964134902282 2 589.2567749023438 MULTI HCD FTMS 0 0 0 10175 41002.125 0.08017859344947953 36 -1.0097274780273438 6 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 3.2813086475875832 0.45793521633868084 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 26.198 0 0 2.2268 0 0 785.2821522443375 0 785.2821522443375 0 19.20818753952375 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.2268 - 3 NaN NaN 95854.5 NaN 7610 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10182 49.57 NaN 121610 35 0 12289 0.262 + 103 ADKMDMSL 8 42 484.70690244442915 967.3992519556583 2 484.7066345214844 MULTI HCD FTMS 0 0 0 10175 63902.4609375 0.6641874548825139 -11 0.3092231750488281 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 45.69961567697781 0.1577113171574352 1 {M(Oxidation (M))|F}S{I|L} 3 5 37.435 0 0 3.8697 0 0 602.2350331037125 0 602.2350331037125 0 27.25772496747986 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + {M(Oxidation (M))|F}S{I|L} 3.8697 + + 21 NaN NaN 103588.8 NaN 7611 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10183 49.574 NaN 186120 35 0 14625 0.261 -1 SCGLHVTSI 9 77 487.24403862953 972.47352432586 2 487.2447509765625 MULTI HCD FTMS 0 0 0 10175 27532.96484375 0.5752858457154647 -1 0.026275634765625 8 Carbamidomethyl (C) _SC(Carbamidomethyl (C))GLHVTSI_ ENSG00000171793|ENST00000650070|CTPS1 54.773552608820026 0.024892918755467567 1 [VS]A[C(Carbamidomethyl (C))H]VTS{I|L} 9 -1 + 56.877 0 0 5.8487 5.8487 83.018 0 0 0 0.45757490560674796 16.478174818886373 0.45757490560674796 0.45757490560674796 0 1.4247425010840047 0 1.579689690656103 0 [VS]A[C(Carbamidomethyl (C))H]VTS{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[C(Carbamidomethyl (C))H]VTS{I|L};[HV]T{[C(Carbamidomethyl (C))G]|[NC]}VTS{I|L};[HV]{[MS]|[{M(Oxidation (M))|F}A]}[QA]TS{I|L};[VS][HM][QA]TS{I|L};[HV]TV{[C(Carbamidomethyl (C))G]|[NC]}TS{I|L};[HV]T[C(Carbamidomethyl (C))R]TS{I|L};[VS]A[C(Carbamidomethyl (C))H]{[WT]|[RM]}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[C(Carbamidomethyl (C))H]{[WT]|[RM]}{I|L} 5.8487;5.8016;3.7376;3.6411;3.304;3.3008;2.9442;1.7074;1.6674 -;-;-;-;-;-;-;-;- 149 NaN NaN 107854 NaN 7612 2569 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10185 49.579 NaN 1648600 35 0 232000 0.327 + 15244 LPAAGVGDMVM 11 96 546.7568773865822 1091.4992018399644 2 546.7574462890625 MULTI HCD FTMS 0 0 0 10184 865526.0625 1 0 0 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 149.9946105101851 9.732271159423064E-05 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 103.59 0 0 9.4911 9.4911 92.012 0 0 0 12.596373105057566 6.1928031367991565 6.1928031367991565 7.812898245978161 0 3.579689690656103 0.958607314841775 0.7302046884880937 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}GG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A[VG]{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.4911;8.7753;8.337;7.6721;7.6212;7.5119;6.6722;6.3578;5.5182;4.8533 +;-;-;-;-;-;-;-;-;- + 3003 NaN NaN 352420.4 NaN 7613 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10186 49.583 NaN 230770 35 0 40857 0.261 -1 EPNPDDPLM 9 60 522.2210675061094 1042.4275820790187 2 522.2211303710938 MULTI HCD FTMS 0 0 0 10184 103550.859375 0.36008758479690145 12 -0.3418998718261719 2 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 29.081581746732265 0.1154664336125038 1 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 23.06 0 0 2.2121 0 0 552.2182752936657 0 552.2182752936657 0 11.63303128443836 0 0 0 0.9247425010840047 0 0 0 D[{I|L}P]{M(Oxidation (M))|F} 2.2121 + + 30 + NaN NaN 137734.5 NaN 7614 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10187 49.587 NaN 595830 35 0 74224 0.261 + 20766 PGLTKEQLE 9 69 507.7766832843215 NaN 0 507.7587585449219 PEAK HCD FTMS 0 0 0 10184 32806.83984375 0.1233280150208895 21 -0.5883445739746094 3 Unmodified _PGLTKEQLE_ ENSG00000169062|ENST00000375299|UPF3A;ENST00000413731.1_1_17:16649540-16650074:-|nuORF;ENST00000480362.5_1_13:115047204-115067220:+|nuORF;ENST00000493727.5_1_13:115047468-115051873:+|nuORF;nc|ENSG00000169062|Q9H1J1-2|UPF3A 14.838274106304384 0.2220448417561729 1 EQ 2 7 13.856 0 0 1.3671 0 0 131.13066798184337 622.2846624234342 753.4153304052775 0 0 0 0 0 0 0 0 0.28872548999643577 + EQ 1.3671 + + 176 + NaN NaN 182055.8 NaN 7615 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10188 49.59 NaN 171670 35 0 8023.6 0.261 + 2669 DVHEIMAGHD 10 56 562.2440908859578 1122.4736288387155 2 562.2439575195312 MULTI HCD FTMS 0 0 0 10184 47366.02734375 0.35520105469702945 3 -0.08877182006835938 4 Unmodified _DVHEIMAGHD_ REV__ENSG00000170921|ENST00000689528|TANC2;REV__nc|ENSG00000170921|Q9HCD6-2|TANC2;REV__nc|ENSG00000170921|Q9HCD6|TANC2 14.838274106304384 0.3723198072575719 1 [DV]HG{[QG]|[NA]}G{[CT]|[{M(Oxidation (M))|F}G]}H{I|L} 11 -1 [DV] + + 27.386 1.1642 0.54378 2.4398 2.4398 59.017 0 0 0 0 16.395222607209078 0 0 0 1.6549471895720984 0 0.8494850021680094 0 [DV]HG{[QG]|[NA]}G{[CT]|[{M(Oxidation (M))|F}G]}H{I|L} 2.4398 - 60 + NaN NaN 117911.6 NaN 7616 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10189 49.593 NaN 232340 35 0 22532 0.261 + 24530 RYLENYDAI 9 60 578.7862338779023 1155.5579148226045 2 578.7853393554688 MULTI HCD FTMS 0 0 0 10184 93322.21875 1 0 0 5 Unmodified _RYLENYDAI_ ENSG00000118939|ENST00000377595|UCHL3;ENST00000563635.5_1_13:76123956-76287321:+|nuORF;ENST00000570285.1_1_13:76140977-76197422:+|nuORF 27.223235318498237 0.1251536255799991 1 ENYDA{I|L} 6 3 55.495 0 0 4.8024 0 0 432.2487049787125 0 432.2487049787125 0 40.89062518744797 0 0 0 0.9916440611282626 0 0.3807196863200844 0 + ENYDA{I|L} 4.8024 + + 131 NaN NaN 119296.6 NaN 7617 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10190 49.597 NaN 117750 35 0 13642 0.261 + -1 SCCCGWWL 8 45 564.7070346263025 1127.399516319405 2 564.7070922851562 MULTI HCD FTMS 0 0 0 10184 44707.1796875 0.4940299196820953 3 -0.08877182006835938 6 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))GWWL_ REV__ENST00000372870.5_1_9:131103082-131105463:+|nuORF 2.577480529830294 0.5381683276125971 1 V 1 -1 3.0989 0 0 0.27488 0 0 505.0968562625674 520.2072237604124 1025.3040800229799 0 0 0 0 0 0 0 0 0 V 0.27488 - 3 + NaN NaN 104634.3 NaN 7618 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10191 49.6 NaN 119750 35 0 15366 0.261 + 24331 RYIDRIHIF 9 43 616.8485651206423 1231.6825773080845 2 616.848876953125 MULTI HCD FTMS 0 0 0 10184 80555.6171875 0.9876827960784723 -1 0.029560089111328125 7 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 14.218169984304629 0.23751450456323905 1 SD[PG]{I|L}{M(Oxidation (M))|F} 6 6 29.526 0 0 2.3972 0 0 597.3903065412125 0 597.3903065412125 0 24.041068762088997 0 0 0 0.5 0 0 0 SD[PG]{I|L}{M(Oxidation (M))|F} 2.3972 - 31 NaN NaN 106052.9 NaN 7619 2570 10184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10193 49.605 NaN 741050 35 0 74069 0.327 + 30176 VHDNQFFNS 9 81 554.2461114594001 1106.4776699856002 2 554.246337890625 MULTI HCD FTMS 0 0 0 10192 285309.40625 0.3275842099684705 4 -0.11826324462890625 1 Unmodified _VHDNQFFNS_ REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF 14.838274106304384 0.23215694253501695 1 DVHG{[ET]|[MV]}{I|L} 7 -1 47.255 0 0 4.2708 0 0 0 352.1049898736938 352.1049898736938 27.56244164733907 0 0 0 0 0.9247425010840047 0 1.2302046884880937 0 DVHG{[ET]|[MV]}{I|L} 4.2708 - 414 + NaN NaN 211080.3 NaN 7620 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10194 49.609 NaN 466130 35 0 28895 0.261 + 34246 YPDRIMNTF 9 79 586.7737018509798 1171.5328507687595 2 586.7739868164062 MULTI HCD FTMS 0 0 0 10192 245427.15625 0.06129493863848011 48 -1.3684463500976562 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 117.83759599426817 0.001662893820975323 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 84.712 0 0 7.2309 7.2309 87.82 0 0 0 7.120471798667552 7.120471798667552 7.120471798667552 5.40681824374424 0 1.8505762035186217 1.3979400086720375 0.23965182871044374 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGTY{M(Oxidation (M))|F} 7.2309;6.7694;6.6231;6.4449;6.2517;5.9834;5.5908;5.5764;5.4657;4.8048 +;-;+;-;-;-;-;-;-;- + 1026 NaN NaN 163627.1 NaN 7621 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10195 49.613 NaN 377220 35 0 73362 0.261 + 6400 FPHISQCEEL 10 59 601.7790637740396 1201.5435746148792 2 601.779296875 MULTI HCD FTMS 0 0 0 10192 254585.796875 0.7997844824200956 6 -0.1807708740234375 3 Unmodified _FPHISQCEEL_ ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6;nc|ENSG00000198055|P43250-3|GRK6 24.020572477871973 0.2864316864133941 1 MANVE{I|L} 6 8 59.998 0 0 4.9934 0 0 526.220018455275 0 526.220018455275 0 45.84121882396211 0 0 0 0.8494850021680094 0 0 1.1861818737241734 MANVE{I|L} 4.9934 - 283 NaN NaN 151226.2 NaN 7622 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10196 49.616 NaN 277350 35 0 16225 0.263 -1 0 62 473.21859967057094 944.4226464079419 2 473.2185363769531 MULTI HCD FTMS 0 0 0 10192 130759.171875 0.3439608040424068 5 -0.141204833984375 4 NaN NaN 1 SAGHR 5 -1 22.652 0 0 2.3985 0 0 0 433.1422213190063 433.1422213190063 4.477890027340976 0 0 0 0 0 0 0 0 SAGHR 2.3985 - 255 + NaN NaN 141044.8 NaN 7623 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10197 49.62 NaN 411020 35 0 53672 0.261 + 24321 RYGLVTNEI 9 87 532.7902655802185 1063.5659782272369 2 532.7911376953125 MULTI HCD FTMS 0 0 0 10192 121922.1015625 0.06018477253885077 14 -0.4044647216796875 5 Unmodified _RYGLVTNEI_ ENSG00000115267|ENST00000649979|IFIH1 27.223235318498237 0.1251536255799991 1 [Y{I|L}]{[NV]|[RG]}VTNE{I|L} 9 2 + 57.347 0 0 5.3919 5.3919 85.982 0 0 0 10.492268421541837 40.65724968184337 10.492268421541837 9.030899869919438 0 1.2302046884880937 1.5228787452803376 0.3494850021680094 0 [Y{I|L}]{[NV]|[RG]}VTNE{I|L};[Y{I|L}]{[NV]|[RG]}VTEN{I|L};[Y{I|L}]{[NV]|[RG]}VTGGE{I|L};[Y{I|L}]K{[RE]|[WV]}NE{I|L};[Y{I|L}]{[NV]|[RG]}VTEGG{I|L};[Y{I|L}]K{[RE]|[WV]}EN{I|L};[Y{I|L}]K{[RE]|[WV]}GGE{I|L};[Y{I|L}]{[NV]|[RG]}VT[DV]AA;[Y{I|L}]K{[RE]|[WV]}EGG{I|L};[Y{I|L}]K{[RE]|[WV]}[DV]AA 5.3919;4.5428;4.5262;3.8667;3.677;3.0175;2.9958;2.269;2.1467;0.73865 -;-;-;-;-;-;-;-;-;- 379 NaN NaN 143890.5 NaN 7624 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10198 49.623 NaN 497200 35 0 81500 0.261 + 555 APEEHPVLL 9 70 502.7741653025147 1003.5337776718294 2 502.7744140625 MULTI HCD FTMS 0 0 0 10192 119061.8515625 0.0011418557923824652 115 -3.28167724609375 6 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}[VP]{I|L}{I|L} 5 5 27.888 0 0 2.7789 0 0 416.15306288886876 0 416.15306288886876 0 -0.651508840673273 -0.651508840673273 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}[VP]{I|L}{I|L} 2.7789 - 253 NaN NaN 156249.9 NaN 7625 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10199 49.626 NaN 125010 35 0 14262 0.261 + 24332 RYIDRIHIF 9 50 616.8485651206423 1231.6825773080845 2 616.848388671875 MULTI HCD FTMS 0 0 0 10192 81560.2109375 1 0 0 7 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 29.43715596616401 0.11383414875064776 1 SDGP{I|L}{M(Oxidation (M))|F} 6 6 33.589 0 0 2.727 0 0 597.3910999982437 0 597.3910999982437 0 28.104028237526748 0 0 0 0.8182503180159344 0 0 0 SDGP{I|L}{M(Oxidation (M))|F} 2.727 - 38 NaN NaN 105679.6 NaN 7626 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10200 49.629 NaN 150100 35 0 11120 0.261 + 11233 IYLEKLKTI 9 55 560.8523235789221 1119.690094224644 2 560.8521118164062 MULTI HCD FTMS 0 0 0 10192 68486 0.1303604286641713 9 -0.2564506530761719 8 Unmodified _IYLEKLKTI_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 51.41523569358685 0.02959097413485123 1 {I|L}Y{I|L}E 4 5 59.998 0 0 5.3584 0 0 0 598.3920992486936 598.3920992486936 46.28653141768609 0 0 0 0 0.6861818737241735 2 1.1989700043360187 0 + {I|L}Y{I|L}E 5.3584 + + 36 + NaN NaN 132057.2 NaN 7627 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10201 49.633 NaN 252540 35 0 22058 0.261 -1 FPDKEVML 8 53 497.7493901552482 993.4842273772964 2 497.7490234375 MULTI HCD FTMS 0 0 0 10192 88834.1015625 0.7604983343397944 -3 0.08210372924804688 9 Oxidation (M) _FPDKEVM(Oxidation (M))L_ ENSG00000104823|ENST00000221418|ECH1;ENST00000601333.1_1_19:39306255-39306727:-|nuORF 19.256988751693697 0.45210759540527456 1 {I|L}M 2 -1 32.25 0 0 3.2462 0 0 0 746.3397792913662 746.3397792913662 6.320232147054057 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 {I|L}M 3.2462 - 46 + NaN NaN 119649.2 NaN 7628 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10202 49.636 NaN 230590 35 0 83931 0.262 + 32041 VYPYKLYRL 9 46 405.5692289363715 1213.6858574093144 3 405.5693359375 MULTI HCD FTMS 0 0 0 10192 68584.84375 0.8988377276643095 1 -0.036251068115234375 10 Unmodified _VYPYKLYRL_ ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant 4.897010918128616 0.31389406404703984 1 VY 2 7 45.217 0 0 3.7256 0 0 0 948.5309696285013 948.5309696285013 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.7256 + + 13 + NaN NaN 119986.2 NaN 7629 2571 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10204 49.641 NaN 2420500 35 0 209610 0.327 + 2673 DVHGPDWHL 9 97 538.2513849822252 1074.4882170312503 2 538.2515869140625 MULTI HCD FTMS 0 0 0 10203 1138168.5 0.2446843319225579 5 -0.14451980590820312 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 149.9946105101851 8.83195450578534E-06 1 DVHGPDWH{I|L} 9 0 + 101.59 0 0 9.4544 9.4544 91.897 0 0 0 7.6893017848452985 7.6893017848452985 7.6893017848452985 7.6893017848452985 0 2.9604093769761874 1.6989700043360187 1.2931576817365436 0 + + DVHGPDWH{I|L};[DV]HGPDWH{I|L};DVHGPD{I|L}[WH];[HV]DGPDWH{I|L};[HV]GDPDWH{I|L};{[HG]|PP}VDPDWH{I|L};[DV]HGP[WH]D{I|L};{[HG]|PP}[DP]VDWH{I|L};[DV]HGP[WH]{I|L}D;[HV]DGP[WH]D{I|L} 9.4544;8.7388;7.8073;7.2526;5.4638;5.4638;5.1549;4.7366;4.3684;3.6687 +;+;-;-;-;-;-;-;-;- + 2817 + NaN NaN 451118.7 NaN 7630 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10205 49.645 NaN 1369300 35 0 226160 0.261 + 30336 VLDRAAELE 9 85 508.27462204770234 1014.5346911622047 2 508.2877197265625 MULTI HCD FTMS 0 0 0 10203 30212.26171875 0.04656774403029374 10 -0.27938079833984375 2 Unmodified _VLDRAAELE_ REV__ENSG00000108479|ENST00000588479|GALK1 13.90604991867851 0.24021115267848145 1 DG{M(Oxidation (M))|F} 3 -1 24.922 0 0 2.4564 0 0 677.4081175311485 0 677.4081175311485 0 6.382060824224435 0 0 0 0 0 0.5 0 DG{M(Oxidation (M))|F} 2.4564 - 668 + NaN NaN 293399.8 NaN 7631 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10206 49.649 NaN 333100 35 0 39061 0.261 + 4187 ETTVYVIVR 9 63 540.3081792889126 1078.601805644625 2 540.3085327148438 MULTI HCD FTMS 0 0 0 10203 105110.75 0.36500673520043747 4 -0.10495376586914062 3 Unmodified _ETTVYVIVR_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 22.736283301280096 0.1639198954644489 1 {[ET]|[MV]}{[TV]|[{I|L}S]}YV{I|L}VR 9 0 + 42.127 0 0 3.9057 3.9057 89.157 0 0 0 15.254537344402905 16.478174818886373 15.254537344402905 42.1265249738142 0 0.3252574989159953 0 0 0 + + {[ET]|[MV]}{[TV]|[{I|L}S]}YV{I|L}VR 3.9057 + + 424 + NaN NaN 138058 NaN 7632 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10207 49.652 NaN 162320 35 0 29191 0.262 + 8274 GVAPFTIAR 9 37 466.27158601625194 930.5286190993039 2 466.2713928222656 MULTI HCD FTMS 0 0 0 10203 62787.671875 0.35148088381840986 4 -0.10495376586914062 4 Unmodified _GVAPFTIAR_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 18.1463463914782 0.20357593197100715 1 RA 2 8 30.969 0 0 3.3281 0 0 0 700.3785262772788 700.3785262772788 20.90743145471194 0 0 0 0 1 0 0 0 RA 3.3281 - 12 + NaN NaN 106237 NaN 7633 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10208 49.656 NaN 272020 35 0 29553 0.261 + 13197 KYLTVKDYL 9 65 571.8266178317351 1141.6386827302701 2 571.8265380859375 MULTI HCD FTMS 0 0 0 10203 171532.765625 0.6100725545353809 -2 0.06251907348632812 5 Unmodified _KYLTVKDYL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 75.5705956163825 0.007285660612518157 1 [YK]{I|L}S{I|L}DKY{I|L} 9 4 + 68.739 0 0 6.0211 6.0211 83.887 0 0 0 7.4599895567132535 40.19917838295306 7.4599895567132535 1.7339374311232802 0 2 0 1.110924374808178 0.3807196863200844 [YK]{I|L}S{I|L}DKY{I|L};[YK]{I|L}S{I|L}KDY{I|L};[YK]{I|L}S{I|L}DYK{I|L};[YK]{I|L}SD{I|L}KY{I|L};[YK]{I|L}S{I|L}DY{I|L}K;[YK]{I|L}DS{I|L}KY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}K{I|L}S{I|L}KY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[K{I|L}]{I|L}DKY{I|L};[YK]{I|L}SD{I|L}YK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[K{I|L}]{I|L}KDY{I|L} 6.0211;5.8692;4.9859;4.7223;4.6374;4.4586;4.1914;3.7815;3.6871;3.6296 -;-;-;-;-;-;-;-;-;- 465 NaN NaN 123686.5 NaN 7634 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10209 49.659 NaN 347470 35 0 115190 0.262 + 14416 LELIRTRYTEA 11 34 455.5890945224547 1363.745454167564 3 455.5892028808594 MULTI HCD FTMS 0 0 0 10203 96248.8203125 0.5369680910646282 -1 0.036251068115234375 6 Unmodified _LELIRTRYTEA_ REV__ENSG00000144674|ENST00000361924|GOLGA4;REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant;REV__nc|ENSG00000144674|Q13439-3|GOLGA4;REV__nc|ENSG00000144674|Q13439-4|GOLGA4;REV__nc|ENSG00000144674|Q13439-5|GOLGA4 2.0839675508343545 0.40978109276162705 1 {I|L}EA 3 -1 30.005 0 0 2.2002 0 0 1032.571886180803 0 1032.571886180803 0 16.025684359364405 0 0 0 0 0 0.3807196863200844 0 {I|L}EA 2.2002 - 17 NaN NaN 135263.7 NaN 7635 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10210 49.662 NaN 248870 35 0 66369 0.261 + 30208 VIDEPVRL 8 67 470.7769202959252 939.5392876586504 2 470.7767333984375 MULTI HCD FTMS 0 0 0 10203 103188.71875 0.8390858443036413 -1 0.036251068115234375 7 Unmodified _VIDEPVRL_ chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 24.020572477871973 0.4170589785259073 1 [{I|L}V]DT 4 5 36.682 0 0 3.9043 0 0 0 508.28959828780984 508.28959828780984 27.730012720637376 0 0 0 0 1 2 0 0 [{I|L}V]DT 3.9043 - 62 NaN NaN 134738.5 NaN 7636 2572 10203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10212 49.667 NaN 3345400 35 0 836290 0.327 + 3764 ENTVLKATPLF 11 87 411.5677977526689 1231.6815638582068 3 411.56805419921875 MULTI HCD FTMS 0 0 0 10211 1712671.875 0.9599967461478216 2 -0.055759429931640625 1 Unmodified _ENTVLKATPLF_ ENST00000445008.6_1_11:130103249-130104112:-|nuORF 11.631370582801994 0.35573789852458537 1 SR{I|L}H{I|L}{M(Oxidation (M))|F} 6 8 55.192 0 0 4.481 0 0 460.24876601386876 0 460.24876601386876 0 35.72809446281443 0 0 0 1.774227503252014 0 0 0.6549471895720984 SR{I|L}H{I|L}{M(Oxidation (M))|F} 4.481 - 340 NaN NaN 587044.8 NaN 7637 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10213 49.672 NaN 3145700 35 0 415560 0.261 + 24784 RYPDRITLI 9 114 573.8350666957131 1145.655580458226 2 573.835205078125 MULTI HCD FTMS 0 0 0 10211 2056381 0.8734000012741803 -1 0.02625274658203125 2 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 121.5340881639634 0.001118397630175091 1 RYPD{I|L}R{I|L}[{I|L}T] 9 2 + 67.952 0 0 5.9313 5.9313 91.744 0 0 0 34.62722546631953 10.225468765256167 10.225468765256167 30.146453331919993 0 1.3539171939081172 1.3979400086720375 1.7090606190045108 0.7302046884880937 RYPD{I|L}R{I|L}[{I|L}T];RY{I|L}[DP]R{I|L}[{I|L}T];{I|L}{I|L}{M(Oxidation (M))|F}K{I|L}DR{[QN]|[E{I|L}]|[KN]};[YR]PD{I|L}K[KA][VG];RY{I|L}{[ET]|[MV]}[R{I|L}][VP];[YR]PD{I|L}K{[VA]|[{I|L}G]}[KG];RY{[ET]|[MV]}{I|L}[R{I|L}][VP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RD{I|L}K[QA][VG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RD{I|L}K[KA][VG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RD{I|L}K{[VA]|[{I|L}G]}[KG] 5.9313;3.2999;3.2888;2.5311;2.5122;2.4838;2.0981;1.4549;1.4549;1.4077 -;-;-;-;-;-;-;-;-;- 1752 + NaN NaN 580235.6 NaN 7638 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10214 49.675 NaN 361620 35 0 50112 0.261 + 25440 SESLFVSNHAY 11 63 627.293763665603 1252.572974398006 2 627.2936401367188 MULTI HCD FTMS 0 0 0 10211 228528.171875 0.5571739145838522 3 -0.07870101928710938 3 Unmodified _SESLFVSNHAY_ ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 108.26204199777034 0.020166657743040706 1 {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY 11 0 + 94.774 0 0 7.5663 7.5663 93.448 0 0 0 7.367585652254178 70.97351071278875 7.367585652254178 17.18312011685188 0 3.829689690656103 0 2.1307196863200843 0 + + {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSGGHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}[SG][VG]HAY;{[ES]|[DT]|[{I|L}C]}S{I|L}QY[VG]HAY 7.5663;6.1945;4.2597;3.5342 +;-;-;- + 463 NaN NaN 140892.2 NaN 7639 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10215 49.679 NaN 512380 35 0 29807 0.261 + 1348 AYPHNLMTF 9 79 555.2577483138126 1108.5009436944251 2 555.2581176757812 MULTI HCD FTMS 0 0 0 10211 156947.234375 0.1091093083194359 26 -0.7199516296386719 4 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 88.95385435242217 0.004553379958619559 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 80.505 0 0 7.2625 7.2625 90.291 0 0 0 17.2690102081704 52.28310310048375 17.2690102081704 9.208187539523749 0 2.322682509756042 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DST{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DTS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{[ET]|[MV]}GST{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{[ET]|[MV]}GTS{M(Oxidation (M))|F};[NP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[PS]{[{M(Oxidation (M))|F}H]|[RQ]}N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 7.2625;6.4318;5.5273;5.4375;5.4169;5.3783;5.3577;4.1983;4.1983;3.524 -;-;-;-;-;-;-;-;-;- 2366 NaN NaN 162988.5 NaN 7640 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10216 49.682 NaN 739840 35 0 148020 0.261 + 16238 LPYGREDVL 9 79 531.2849318459457 1060.5553107586913 2 531.2848510742188 MULTI HCD FTMS 0 0 0 10211 244927.765625 0.617392110221869 -3 0.08877182006835938 5 Unmodified _LPYGREDVL_ CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;ENSG00000163131|ENST00000368985|CTSS;nc|ENSG00000163131|P25774-2|CTSS 70.33199760932243 0.0089807860198535 1 {I|L}PYT{I|L} 5 5 65.675 0 0 6.1925 0 0 0 470.2153719537719 470.2153719537719 41.84110919430697 0 0 0 0 0.9247425010840047 2 0.75 0 {I|L}PYT{I|L} 6.1925 - 310 + NaN NaN 196348.5 NaN 7641 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10217 49.685 NaN 362410 35 0 28594 0.261 + 12969 KYIHFTPNF 9 73 583.8046369512879 NaN 0 583.8036499023438 PEAK HCD FTMS 0 0 0 10211 177385.84375 0.7852205787147959 -1 0.02625274658203125 6 Unmodified _KYIHFTPNF_ ENSG00000137975|ENST00000370565|CLCA2 96.93554129104106 4.381645330502557E-05 1 Y{I|L}H{M(Oxidation (M))|F}TP 6 3 49.902 0 0 4.2813 0 0 128.0953834050154 276.0983980768188 404.1937814818342 0 0 0 0 0 1.9247425010840047 0 1.1549471895720984 0 + Y{I|L}H{M(Oxidation (M))|F}TP 4.2813 + + 253 + NaN NaN 143305.4 NaN 7642 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10218 49.689 NaN 158400 35 0 18225 0.261 + -1 LAPPCYYGSS 10 56 557.747745756273 1113.480938579346 2 557.7479858398438 MULTI HCD FTMS 0 0 0 10211 77128.2421875 0.6641732735853677 4 -0.11826705932617188 7 Carbamidomethyl (C) _LAPPC(Carbamidomethyl (C))YYGSS_ REV__ENSG00000153246|ENST00000283243|PLA2R1;REV__nc|ENSG00000153246|Q13018-2|PLA2R1;REV__PLA2R1|p.L877Tfs*8|1|0.13|ENSG00000153246|chr2:159970180-159970181|-/C|frameshift_variant 6.723162845929126 0.4397169348982109 1 {I|L}PAAGY{[{M(Oxidation (M))|F}D]|MM}N{M(Oxidation (M))|F} 10 -1 + 55.979 0 0 5.0274 5.0274 85.579 0 0 0 38.23699398972998 1.025684359364405 1.025684359364405 9.164539485499255 0 1.2614393726401687 0 0 0 {I|L}PAAGY{[{M(Oxidation (M))|F}D]|MM}N{M(Oxidation (M))|F};{I|L}PAAGY{[{M(Oxidation (M))|F}D]|MM}GG{M(Oxidation (M))|F};{I|L}PAQY{[{M(Oxidation (M))|F}D]|MM}N{M(Oxidation (M))|F};{I|L}PAQY{[{M(Oxidation (M))|F}D]|MM}GG{M(Oxidation (M))|F} 5.0274;4.2044;3.9917;3.1648 -;-;-;- 111 + NaN NaN 122472 NaN 7643 2573 10211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10220 49.694 NaN 594050 35 0 70416 0.326 + 18937 NAFKEITTM 9 80 527.7665705405707 1053.5185881479413 2 527.7655639648438 MULTI HCD FTMS 0 0 0 10219 340473.5625 0.7634667642283282 3 -0.092010498046875 1 Unmodified _NAFKEITTM_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 121.5340881639634 0.001118397630175091 1 {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TTM 9 0 + 86.385 0 0 8.1997 8.1997 93.354 0 0 0 73.82245020145518 13.46787486224656 13.46787486224656 12.218487496163561 0 2.805462187404089 1.6989700043360187 0.6549471895720985 0 + + {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TTM;{[QG]|[NA]}{M(Oxidation (M))|F}[VG]T{I|L}TTM;{[DS]|[MA]|[CV]|TT}M[KQ]{I|L}TTM;{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}EKSQV;{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}EKSN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}EKS[AG]V;{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}[KQ][PS]M;{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}EKSGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}T[VG]SQV;{[QG]|[NA]}[HV][DG]KSQV 8.1997;7.0399;5.5629;4.8775;4.6468;4.0035;3.7905;3.7728;3.7177;3.6633 +;-;-;-;-;-;-;-;-;- + 798 + NaN NaN 175046.4 NaN 7644 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10221 49.698 NaN 235760 35 0 28701 0.261 + 23549 RPAVLDPAL 9 43 476.28474625740597 950.554939581612 2 476.28466796875 MULTI HCD FTMS 0 0 0 10219 97994.3984375 0.6612336867213692 3 -0.092010498046875 2 Unmodified _RPAVLDPAL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 20.41453444215458 0.18397929046831515 1 [PA][RV]{I|L}DPA{I|L} 9 2 + 50.608 0 0 5.324 5.324 91.638 0 0 0 1.5398434942549954 45.123337350737245 1.5398434942549954 50.607887415777526 0 1.3494850021680094 0 0 0 [PA][RV]{I|L}DPA{I|L} 5.324 - 35 NaN NaN 121204.6 NaN 7645 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10222 49.702 NaN 113370 35 0 19347 0.261 + 5365 FGHAEVVSL 9 45 479.7532482230337 957.4919435128675 2 479.75335693359375 MULTI HCD FTMS 0 0 0 10219 67145.4375 0.28480682077033365 6 -0.16769027709960938 3 Unmodified _FGHAEVVSL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 19.256988751693697 0.19398022840297344 1 VVS{I|L} 4 5 41.23 0 0 4.306 0 0 541.2280140607437 0 541.2280140607437 0 35.74539712336197 0 0 0 0.8807196863200843 0 0.3494850021680094 0 + VVS{I|L} 4.306 + + 112 NaN NaN 103964.2 NaN 7646 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10223 49.705 NaN 182850 35 0 15899 0.261 + 13060 KYLDIPKML 9 61 568.8230710273959 1135.6315891215918 2 568.8228149414062 MULTI HCD FTMS 0 0 0 10219 103439.21875 0.7951250277298249 -5 0.14458847045898438 4 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ ENSG00000072110|ENST00000394419|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814|ACTN1 55.23464941255904 0.024247875903973527 1 KY{I|L}D{I|L}PK{M(Oxidation (M))|F}{I|L} 9 0 + 68.198 0 0 6.0053 6.0053 90.397 0 0 0 51.99986893552975 8.697114610913488 8.697114610913488 16.052659518797938 0 1.9604093769761874 0 0 0 + + KY{I|L}D{I|L}PK{M(Oxidation (M))|F}{I|L};{I|L}[YK]D{I|L}PK{M(Oxidation (M))|F}{I|L};[YK]{I|L}D{I|L}PK{M(Oxidation (M))|F}{I|L};[YK]{I|L}D{I|L}{M(Oxidation (M))|F}[KP]{I|L};[YK]{I|L}D{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{I|L} 6.0053;4.5917;4.2227;2.7294;2.4643 +;-;+;-;- + 218 + NaN NaN 106621.8 NaN 7647 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10224 49.708 NaN 103820 35 0 9629.2 0.261 + 16951 LYHLVEIH 8 45 512.2844391637798 1022.5543253943596 2 512.2847290039062 MULTI HCD FTMS 0 0 0 10219 52112.30859375 1 0 0 5 Unmodified _LYHLVEIH_ REV__ENSG00000097096|ENST00000341460|SYDE2;REV__ENSG00000105137|ENST00000342784|SYDE1;REV__nc|ENSG00000105137|Q6ZW31-2|SYDE1 42.96799951952854 0.1928021754174411 1 {I|L}YV[H{I|L}]EH{I|L} 8 -1 + 66.604 0 0 6.5135 6.5135 94.123 0 0 0 59.614262661931434 8.851518780601921 8.851518780601921 66.60396270529162 0 1.274227503252014 2 0.9247425010840047 0 {I|L}YV[H{I|L}]EH{I|L} 6.5135 - 21 + NaN NaN 99845.8 NaN 7648 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10225 49.711 NaN 210260 35 0 17997 0.261 -1 HYMPPPYASL 10 68 596.2787767458536 1190.5430005585072 2 596.27685546875 MULTI HCD FTMS 0 0 0 10219 39369.02734375 0.5865895642223861 -1 0.026256561279296875 6 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant 26.88365393820708 0.25965138844209146 1 {[WN]|[YH]}{M(Oxidation (M))|F}[RP]Q[SG]S{I|L} 10 -1 + 39.142 0 0 3.2877 3.2877 59.443 0 0 0 3.6966623150499345 25.189549981487076 3.6966623150499345 0 0 1 0 0.4247425010840047 0 {[WN]|[YH]}{M(Oxidation (M))|F}[RP]Q[SG]S{I|L};{[WN]|[YH]}{M(Oxidation (M))|F}[RP][NS]AS{I|L};{[WN]|[YH]}[QT]WWAS{I|L};{[WN]|[YH]}{M(Oxidation (M))|F}[RP]{[ET]|[MV]}E{I|L};{[WN]|[YH]}[QT][HT]YE{I|L} 3.2877;3.2877;2.9727;1.732;1.4599 -;-;-;-;- 82 NaN NaN 115467.9 NaN 7649 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10226 49.715 NaN 107500 35 0 13525 0.261 + 34351 YPEGFEIHSM 10 43 613.2633828160687 1224.5122126989372 2 613.263671875 MULTI HCD FTMS 0 0 0 10219 47154.91015625 0.1387738321399579 -16 0.4538116455078125 7 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 62.57269311338072 0.03206542651389879 1 YPEG{M(Oxidation (M))|F}E{I|L} 7 3 83.136 0 0 6.7893 0 0 0 386.11252771549067 386.11252771549067 72.67806064157476 0 0 0 0 1 1.6989700043360187 0.805462187404089 0 + YPEG{M(Oxidation (M))|F}E{I|L} 6.7893 + + 149 + NaN NaN 113144.5 NaN 7650 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10227 49.718 NaN 167060 35 0 40849 0.261 + 16598 LVMCVSSLTLL 11 43 589.8299792003891 1177.645405467578 2 589.8294677734375 MULTI HCD FTMS 0 0 0 10219 43968.94140625 0.9196881113915901 -2 0.052509307861328125 8 Unmodified _LVMCVSSLTLL_ ENSG00000204687|ENST00000377127|MAS1L 6.2057823575117 0.391704213221645 1 {I|L} 1 10 5.4846 0 0 0.46572 0 0 132.24278219516333 929.2981550782919 1061.5409372734553 0 0 0 0 0 0 0 0 0 + {I|L} 0.46572 + + 3 + NaN NaN 114665 NaN 7651 2574 10219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10229 49.723 NaN 1052700 35 0 178570 0.327 + 15245 LPAAGVGDMVM 11 85 546.7568773865822 1091.4992018399644 2 546.757080078125 MULTI HCD FTMS 0 0 0 10228 538805.8125 0.6225182993839657 5 -0.13818740844726562 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 158.20266083822983 1.6246355097108358E-06 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 104.36 0 0 9.5611 9.5611 95.385 0 0 0 1.755624045250272 1.755624045250272 1.755624045250272 13.331397237028199 0 4.079689690656103 0 1.031234684152075 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAGV[EC]SV{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQV[EC]SV{M(Oxidation (M))|F};[{I|L}P]GAAVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]GQ{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]GAAV[EC]SV{M(Oxidation (M))|F};[{I|L}P]GQ{I|L}[EC]SV{M(Oxidation (M))|F} 9.5611;8.3398;8.0343;7.1688;6.6758;6.4001;6.3291;5.5218;4.8733;3.995 +;-;-;-;-;-;-;-;-;- + 1424 + NaN NaN 244251.9 NaN 7652 2575 10228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10230 49.728 NaN 471080 35 0 41297 0.263 + 4786 EYVEKFYRI 9 72 416.22019191672985 1245.6387463503895 3 416.2201232910156 MULTI HCD FTMS 0 0 0 10228 76844.484375 0.029434487620252917 32 -0.891571044921875 2 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 1 [YE]VEK{M(Oxidation (M))|F}[TA]{I|L}{M(Oxidation (M))|F} 10 3 [YE] + + 35.839 5.4576 1.8684 2.8772 2.8772 59.221 0 0 0 0 20.17728766960431 0 0 0 1 0 0 0 [YE]VEK{M(Oxidation (M))|F}[TA]{I|L}{M(Oxidation (M))|F} 2.8772 - 115 + NaN NaN 151962.3 NaN 7653 2575 10228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10231 49.731 NaN 124570 35 0 8847.4 0.261 + 26851 SYILQKSTF 9 52 543.795101302675 1085.57564967215 2 543.79541015625 MULTI HCD FTMS 0 0 0 10228 40615.96875 0.5143478567998352 3 -0.08217239379882812 3 Unmodified _SYILQKSTF_ BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2 30.7034409873982 0.10802119112323902 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}QKST{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 46.573 5.2288 2.0907 4.2902 4.2902 60.473 0 0 0 0 34.979433663079114 0 0 0 1.7302046884880937 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}QKST{M(Oxidation (M))|F} 4.2902 + + 160 + NaN NaN 95833.2 NaN 7654 2575 10228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10232 49.734 NaN 115630 35 0 22319 0.261 + 16557 LTTVRTYLGH 10 45 580.8249375679547 1159.6353222027094 2 580.8253173828125 MULTI HCD FTMS 0 0 0 10228 62489.55078125 1 0 0 4 Unmodified _LTTVRTYLGH_ REV__ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;REV__ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;REV__ENSG00000189079|ENST00000334344|ARID2;REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF;REV__ENST00000427628.5_1_12:46123676-46149750:+|nuORF;REV__nc|ENSG00000189079|Q68CP9-3|ARID2 5.731851221503515 0.44496410492002586 1 T 1 -1 8.9794 0 0 0.77433 0 0 261.20955423571564 794.3628107988271 1055.5723650345428 0 0 0 0 0 0 0 0.3494850021680094 0 T 0.77433 + + 14 + NaN NaN 118453.2 NaN 7655 2575 10228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10233 49.738 NaN 75594 35 0 5526 0.261 -1 VYNENLVHMI 10 42 624.3082465164656 1246.601940099731 2 624.3082275390625 MULTI HCD FTMS 0 0 0 10228 45780.23046875 0.1088238072125123 13 -0.3716468811035156 5 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 21.536976647645854 0.3096624038397699 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}V 7 -1 36.783 0 0 2.9507 0 0 0 412.16587244205317 412.16587244205317 12.397416289617524 0 0 0 0 0.3807196863200844 2 0 0 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}V 2.9507 + + 50 + NaN NaN 97115.7 NaN 7656 2575 10228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10234 49.741 NaN 111700 35 0 14524 0.261 + 24396 RYKGPGFEYF 10 41 632.3116118557924 1262.6086707783847 2 632.3109130859375 MULTI HCD FTMS 0 0 0 10228 30143.998046875 0.06741416645403354 -6 0.17409133911132812 6 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 21.799462835604743 0.30720719660089946 1 EY{M(Oxidation (M))|F} 3 7 39.253 0 0 3.1088 0 0 805.4232655255875 0 805.4232655255875 0 23.79493455131808 0 0 0 0.5 0 0.805462187404089 0 + EY{M(Oxidation (M))|F} 3.1088 + + 33 NaN NaN 94868 NaN 7657 2575 10228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10236 49.746 NaN 422040 35 0 25637 0.327 + 34247 YPDRIMNTF 9 81 586.7737018509798 1171.5328507687595 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10235 227339.53125 0.056777590674909596 53 -1.5131912231445312 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 93.93812099017352 0.0044227730261779084 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 73.718 0 0 6.2924 6.2924 86.062 0 0 0 19.621892823592972 46.51679233496525 19.621892823592972 5.5102999566398125 0 1.9049471895720984 1.3979400086720375 0.28872548999643577 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGTY{M(Oxidation (M))|F} 6.2924;5.8221;5.5064;5.2668;5.2494;5.0361;4.7953;4.4808;4.4634;4.0093 +;-;-;-;-;-;-;-;-;- + 1372 NaN NaN 153138.9 NaN 7658 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10237 49.75 NaN 320320 35 0 55819 0.261 + -1 HNMAEPFVLE 10 62 601.7790637740396 1201.5435746148792 2 601.779296875 MULTI HCD FTMS 0 0 0 10235 179351.015625 0.563433471010122 11 -0.3157615661621094 2 Oxidation (M) _HNM(Oxidation (M))AEPFVLE_ REV__ENSG00000135638|ENST00000258106|EMX1 22.736283301280096 0.29844449404982915 1 EMANVE{I|L} 7 -1 72.74 0 0 6.0539 0 0 397.1682301251969 0 397.1682301251969 0 58.92744800765776 0 0 0 1.079689690656103 0 0.3494850021680094 1.274227503252014 EMANVE{I|L} 6.0539 - 350 NaN NaN 135494.9 NaN 7659 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10238 49.754 NaN 619760 35 0 31994 0.263 + 24670 RYLSPKYIKMF 11 74 482.60394014715575 1444.7899910416672 3 482.6038818359375 MULTI HCD FTMS 0 0 0 10235 208216.3125 0.6393716485493253 -4 0.10495376586914062 3 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 72.18682940623714 0.013206789122802947 1 [Y{I|L}]RSPKY{I|L}KM{M(Oxidation (M))|F} 11 2 + 97.031 0 0 6.7159 6.7159 91.347 0 0 0 14.101744650890481 10 10 14.101744650890481 0 3.004432191740108 1.3010299956639813 2.1237125054200234 0 [Y{I|L}]RSPKY{I|L}KM{M(Oxidation (M))|F};[YR]{I|L}SPKY{I|L}KM{M(Oxidation (M))|F};[Y{I|L}]KS[RP]Y{I|L}KM{M(Oxidation (M))|F};[K{I|L}]YS[RP]Y{I|L}KM{M(Oxidation (M))|F};[YR][KT][VP]Y{I|L}KM{M(Oxidation (M))|F} 6.7159;5.7399;5.1519;4.3525;3.5385 -;+;-;-;- + 657 NaN NaN 183142.9 NaN 7660 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10239 49.757 NaN 439170 35 0 49788 0.261 + 15925 LPNKVDPLV 9 66 497.8002273886366 993.5859018440732 2 497.80029296875 MULTI HCD FTMS 0 0 0 10235 156246.515625 1 0 0 4 Unmodified _LPNKVDPLV_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant 49.55428908609986 0.03219431099695407 1 [{I|L}P]D{I|L}{I|L}DP{I|L} 8 4 39.447 0 0 3.9702 0 0 0 114.05602631194202 114.05602631194202 17.395775165767873 0 0 0 0 1.2614393726401687 1.6989700043360187 0 0 [{I|L}P]D{I|L}{I|L}DP{I|L} 3.9702 - 285 NaN NaN 148093.9 NaN 7661 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10240 49.761 NaN 435930 35 0 42886 0.261 + 15569 LPDRDLAL 8 64 456.76121498169226 911.5078770301845 2 456.7609558105469 MULTI HCD FTMS 0 0 0 10235 208628.109375 0.4823592521462174 -6 0.16747283935546875 5 Unmodified _LPDRDLAL_ ENSG00000077463|ENST00000337491|SIRT6;ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF 66.45667989310934 0.03378486823941425 1 [{I|L}P]DRDA{I|L}{I|L} 8 2 + 76.501 0 0 8.3928 8.3928 88.448 0 0 0 13.526909627198407 16.40978057358332 13.526909627198407 2.7422750325201406 0 1.6549471895720984 1.0969100130080565 0.9876954943324545 0 [{I|L}P]DRDA{I|L}{I|L};[{I|L}P]DRD{I|L}A{I|L};[DP]{I|L}RDA{I|L}{I|L};[{I|L}P]D{I|L}[RD]A{I|L};[DP]{I|L}RD{I|L}A{I|L};[DP]{I|L}{I|L}[RD]A{I|L};{[TV]|[{I|L}S]}[HT]{[SA]|[TG]}A{I|L}{I|L};{[TV]|[{I|L}S]}[HT]{[SA]|[TG]}{I|L}A{I|L};{[TV]|[{I|L}S]}[HT][QT]{I|L}{I|L} 8.3928;8.0919;6.9088;6.6953;6.6079;5.2113;2.5056;2.2047;1.7949 -;+;-;-;-;-;-;-;- + 205 NaN NaN 148788.8 NaN 7662 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10241 49.764 NaN 184300 35 0 33813 0.261 + 16507 LTHAYAAR 8 44 451.745638957966 901.476724982732 2 451.7455139160156 MULTI HCD FTMS 0 0 0 10235 90106.1640625 0.8043134747392008 2 -0.059230804443359375 6 Unmodified _LTHAYAAR_ REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1 5.230669730166228 0.5342319408533849 1 CR[VP] 4 -1 20.203 0 0 2.2411 0 0 428.23469741035314 0 428.23469741035314 0 0.7390874094431865 0 0 0 0.3252574989159953 0 0 0.4247425010840047 CR[VP] 2.2411 - 29 NaN NaN 111292.9 NaN 7663 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10242 49.767 NaN 704690 35 0 266510 0.261 + 24402 RYKGPGFEYF 10 48 421.8765733280575 1262.6078905843724 3 421.8771667480469 MULTI HCD FTMS 0 0 0 10235 118039.5 0.15242652360585685 -5 0.141204833984375 7 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 7.945399516374404 0.4332474418965133 1 YY{M(Oxidation (M))|F} 3 7 34.693 0 0 2.7477 0 0 771.3868275373062 0 771.3868275373062 0 28.1259189508755 0 0 0 1 0 0 0 YY{M(Oxidation (M))|F} 2.7477 - 24 NaN NaN 189533.3 NaN 7664 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10243 49.771 NaN 168590 35 0 16284 0.261 + 21603 PYNQQHLYF 9 49 605.2886998165026 1208.562846699805 2 605.2888793945312 MULTI HCD FTMS 0 0 0 10235 48366.17578125 0.7310948797016136 -2 0.0524444580078125 8 Unmodified _PYNQQHLYF_ ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF 39.94969957227396 0.06557568441294001 1 S{I|L}Y{M(Oxidation (M))|F} 4 6 36.938 0 0 3.0564 0 0 680.3140125959 0 680.3140125959 0 30.996075289514096 0 0 0 0.5 0 0 0 S{I|L}Y{M(Oxidation (M))|F} 3.0564 - 42 NaN NaN 124412.3 NaN 7665 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10244 49.774 NaN 72555 35 0 11631 0.261 -1 SYMLVNENRF 10 31 644.8032326844261 1287.5919124356521 2 644.8030395507812 MULTI HCD FTMS 0 0 0 10235 49279.4765625 0.5859264468645072 5 -0.14816665649414062 9 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 24.881564428377168 0.27837825820855233 1 ENV{I|L}[EC]{M(Oxidation (M))|F} 7 -1 40.489 0 0 3.1446 0 0 435.2231617658219 0 435.2231617658219 0 40.11057864557092 0 0 0 1.274227503252014 0 0 0 ENV{I|L}[EC]{M(Oxidation (M))|F} 3.1446 - 35 NaN NaN 92071.5 NaN 7666 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10245 49.777 NaN 164260 35 0 15519 0.261 + 21468 PYAKPIPAQF 10 60 566.3135377406946 1130.6125225481892 2 566.3139038085938 MULTI HCD FTMS 0 0 0 10235 50323.89453125 0.9115194284086132 -1 0.02294158935546875 10 Unmodified _PYAKPIPAQF_ ENSG00000136709|ENST00000322313|WDR33 56.17704186161178 0.05532499666593632 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AK[{I|L}P][PA]Q{M(Oxidation (M))|F} 10 0 + 54.442 0 0 4.8153 4.8153 61.277 0 0 0 15.21652514092061 16.532125137753432 15.21652514092061 0 0 1.6549471895720984 1.6989700043360187 0 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AK[{I|L}P][PA]Q{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KA[{I|L}P][PA]Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}A[{I|L}P][PA]Q{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WP]KA{[QN]|[E{I|L}]|[KN]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[WP]KA{[QN]|[E{I|L}]|[KN]} 4.8153;4.8153;3.4694;1.1531;0.49198 +;-;-;-;- + 132 NaN NaN 113147.5 NaN 7667 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10246 49.781 NaN 112610 35 0 29030 0.261 + 29683 VCDMHWHHL 9 28 589.2554832117141 1176.4964134902282 2 589.2557983398438 MULTI HCD FTMS 0 0 0 10235 31884.0546875 0.062348443118741645 43 -1.2272415161132812 11 Unmodified _VCDMHWHHL_ REV__ENST00000306353.7_2_2:85828206-85829758:-|nuORF;REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF;REV__ENST00000455852.1_1_2:85828554-85830202:-|nuORF 1.844237919475145 0.33703635659052655 1 {I|L}{I|L} 2 -1 20.969 0 0 1.7823 0 0 932.3187962209212 0 932.3187962209212 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.7823 - 1 NaN NaN 99409.1 NaN 7668 2576 10235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10248 49.786 NaN 398330 35 0 36981 0.327 + 4787 EYVEKFYRI 9 69 416.22019191672985 1245.6387463503895 3 416.227783203125 MULTI HCD FTMS 0 0 0 10247 66606.796875 0.025513046954346072 34 -0.9340362548828125 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 1 [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 9 0 + 28.65 0 0 2.3 2.3 86.865 0 0 0 2.4519070991881655 2.9221525151212226 2.4519070991881655 21.682659215437248 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}];[{I|L}V]{[SA]|[TG]}{[QN]|[E{I|L}]|[KN]}{I|L}EV[C(Carbamidomethyl (C))N] 2.3;0.55932 +;- + 88 + NaN NaN 152955.4 NaN 7669 2577 10247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10249 49.79 NaN 123040 35 0 8556.9 0.261 + 18346 MPISSHVDL 9 53 499.75088105799176 997.4872091827835 2 499.75250244140625 MULTI HCD FTMS 0 0 0 10247 49699.78125 0.9129963702292927 3 -0.07567977905273438 2 Unmodified _MPISSHVDL_ ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B 30.636539890814138 0.10832830463492794 1 MP{I|L} 3 6 32.435 0 0 3.2517 0 0 0 653.290631990969 653.290631990969 1.2371250542002343 0 0 0 0 0.9247425010840047 0 0 0 + MP{I|L} 3.2517 + + 48 + NaN NaN 100152.4 NaN 7670 2577 10247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10250 49.794 NaN 92727 35 0 10952 0.261 + 3966 EQPETYYKW 9 49 622.2856237403366 1242.5566945474732 2 622.2860107421875 MULTI HCD FTMS 0 0 0 10247 26373.560546875 0.5912702916526329 1 -0.019664764404296875 3 Unmodified _EQPETYYKW_ ENSG00000164880|ENST00000404767|INTS1 21.536976647645854 0.1742816388551942 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[EP]TYYKW 9 0 + 28.35 0 0 2.2816 2.2816 87.441 0 0 0 16.667724800373453 12.983324797206281 12.983324797206281 28.35016244829767 0 0.4247425010840047 0 0 0 + + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[EP]TYYKW 2.2816 + + 64 + NaN NaN 114031.3 NaN 7671 2577 10247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10251 49.797 NaN 76675 35 0 5715.3 0.264 -1 0 39 473.21859967057094 944.4226464079419 2 473.21783447265625 MULTI HCD FTMS 0 0 0 10247 30600.470703125 0.08049425792620322 11 -0.3091392517089844 4 NaN NaN 1 H 1 -1 5.4846 0 0 0.58073 0 0 213.08806496438564 591.2530611627561 804.3411261271417 0 0 0 0 0 0 0 0 0 H 0.58073 - 11 + NaN NaN 99112.1 NaN 7672 2577 10247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10252 49.8 NaN 183540 35 0 14943 0.261 + 31459 VYDTVFKHF 9 64 578.2945686964387 1154.5745844596772 2 578.2944946289062 MULTI HCD FTMS 0 0 0 10247 55487.046875 0.6601234990511763 -2 0.06250762939453125 5 Unmodified _VYDTVFKHF_ ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L 53.832793166522166 0.026208976789938845 1 VYDT 4 5 63.532 0 0 5.5026 0 0 0 673.3505953424436 673.3505953424436 46.53720958383822 0 0 0 0 1.035666875892183 2 0.4247425010840047 0 + VYDT 5.5026 + + 167 + NaN NaN 118824.6 NaN 7673 2577 10247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10254 49.805 NaN 1966600 35 0 275660 0.327 + 24785 RYPDRITLI 9 115 573.8350666957131 1145.655580458226 2 573.835205078125 MULTI HCD FTMS 0 0 0 10253 1208294 0.5131947733127199 4 -0.11519622802734375 1 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 114.20165948288297 0.0022564706844261533 1 [YR]PDR{I|L}T 7 2 56.783 0 0 4.9564 0 0 0 241.15733693484427 241.15733693484427 18.98657795251836 0 0 0 0 1.6677353201839438 1.3010299956639813 0 2.110924374808178 + [YR]PDR{I|L}T 4.9564 + + 995 NaN NaN 385271.9 NaN 7674 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10255 49.81 NaN 1682500 35 0 410500 0.264 -1 0 68 411.5677977526689 1231.6815638582068 3 411.5680236816406 MULTI HCD FTMS 0 0 0 10253 696756.375 0.3905499136299832 7 -0.20402908325195312 2 NaN NaN 1 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 5 -1 34.208 0 0 2.7774 0 0 547.2747762021298 0 547.2747762021298 0 14.744237387763093 0 0 0 1.5 0 0 0 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 2.7774 - 40 NaN NaN 334411.7 NaN 7675 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10256 49.813 NaN 982720 35 0 79065 0.261 + 2674 DVHGPDWHL 9 85 538.2513849822252 1074.4882170312503 2 538.25146484375 MULTI HCD FTMS 0 0 0 10253 334934.5 0.07200447417962803 11 -0.31246185302734375 3 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 96.28474662873226 0.004361282420133734 1 [HV]DGPDWH{I|L} 9 2 + 69.734 0 0 6.4899 6.4899 86.723 0 0 0 4.137342758552691 47.03070327321406 4.137342758552691 6.096981436199016 0 1.805462187404089 0 1.086696871556164 0 [HV]DGPDWH{I|L};DVHGPDWH{I|L};{[HG]|PP}[DV]PDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};D[RH]{[DS]|[MA]|[CV]|TT}{I|L}W{M(Oxidation (M))|F};{[HG]|PP}[DP]W[DV]H{I|L};{[HG]|PP}[DP]WH[DV]{I|L} 6.4899;5.9225;4.3216;4.0902;2.714;2.0858;1.4513 -;+;-;-;-;-;- + 747 NaN NaN 235952.8 NaN 7676 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10257 49.817 NaN 1221500 35 0 143000 0.261 + 25644 SHALLLSWS 9 97 507.2736873146556 1012.5328216961112 2 508.28778076171875 MULTI HCD FTMS 0 0 0 10253 14935.3212890625 0.7321908895578638 1 -0.036296844482421875 4 Unmodified _SHALLLSWS_ REV__ENST00000265395.6_1_7:27565748-27565832:-|nuORF 10.823927491677226 0.26684000660059787 1 EVDG{M(Oxidation (M))|F} 5 -1 37.779 0 0 3.7312 0 0 447.29589650255497 0 447.29589650255497 0 5.603940042686723 0 0 0 0 0 1.274227503252014 0 EVDG{M(Oxidation (M))|F} 3.7312 - 800 + NaN NaN 268918.2 NaN 7677 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10258 49.82 NaN 905130 35 0 116990 0.261 + 24841 RYPTSIASL 9 76 504.2796071581441 1006.5446613830882 2 504.27984619140625 MULTI HCD FTMS 0 0 0 10253 332487.71875 0.07143982975635754 -11 0.3087921142578125 5 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 86.33184430468982 0.004622086694044132 1 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 73.637 0 0 7.3158 0 0 0 128.07164155484216 128.07164155484216 60.71162613807297 0 0 0 0 1.1989700043360187 1.5228787452803376 1.7544321917401078 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 7.3158 - 637 NaN NaN 230177.2 NaN 7678 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10259 49.823 NaN 130610 35 0 14088 0.261 + 104 ADKMDMSL 8 43 484.70690244442915 967.3992519556583 2 484.70648193359375 MULTI HCD FTMS 0 0 0 10253 58911.98828125 0.6123176319744833 -2 0.059230804443359375 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 66.45667989310934 0.03378486823941425 1 MD{M(Oxidation (M))|F}S{I|L} 5 3 46.766 0 0 4.8342 0 0 356.16722304511876 0 356.16722304511876 0 43.667053245199625 0 0 0 1.305462187404089 0 0.4247425010840047 0 + MD{M(Oxidation (M))|F}S{I|L} 4.8342 + + 28 NaN NaN 99239.6 NaN 7679 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10260 49.827 NaN 330710 35 0 64051 0.261 + 31610 VYILKGGYERF 11 61 448.9146464115622 1343.7221098348866 3 448.9150085449219 MULTI HCD FTMS 0 0 0 10253 56232.0625 0.6044346061860103 3 -0.08893585205078125 7 Unmodified _VYILKGGYERF_ ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 8.751783647060863 0.3805383164556717 1 VY{I|L} 3 8 53.333 0 0 3.969 0 0 0 965.4843528130883 965.4843528130883 38.72847372392647 0 0 0 0 0.7134679910804405 2 0 0 + VY{I|L} 3.969 + + 33 + NaN NaN 132016.2 NaN 7680 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10261 49.83 NaN 96826 35 0 12065 0.261 + 25441 SESLFVSNHAY 11 41 627.293763665603 1252.572974398006 2 627.2938842773438 MULTI HCD FTMS 0 0 0 10253 49342.80859375 0.12030256749167562 8 -0.23688888549804688 8 Unmodified _SESLFVSNHAY_ ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 35.079672537005266 0.16863851843823818 1 {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VS 7 4 45.406 0 0 3.625 0 0 0 500.1877535455688 500.1877535455688 24.43652269646357 0 0 0 0 1.305462187404089 0 0 0 + {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VS 3.625 + + 40 + NaN NaN 99100.7 NaN 7681 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10262 49.833 NaN 188090 35 0 30221 0.261 + 21031 PLRWEEKF 8 53 552.7957470548157 1103.5769411764313 2 552.7969970703125 MULTI HCD FTMS 0 0 0 10253 61081.55859375 0.7940269436037961 -1 0.019664764404296875 9 Unmodified _PLRWEEKF_ REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF 20.453626601364224 0.4433031943603284 1 {I|L}P{[ET]|[MV]}S[WP]K 8 -1 42.273 0 0 3.8305 0 0 0 162.05587183170158 162.05587183170158 27.58024070117017 0 0 0 0 0.8807196863200843 1.6989700043360187 0.4247425010840047 0 {I|L}P{[ET]|[MV]}S[WP]K 3.8305 - 152 + NaN NaN 114905.1 NaN 7682 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10263 49.837 NaN 264480 35 0 67080 0.261 + 2288 DLRDDPVF 8 54 488.7404439022212 975.4663348712425 2 488.7406921386719 MULTI HCD FTMS 0 0 0 10253 94383.1328125 0.4803301476299499 -3 0.08217239379882812 10 Unmodified _DLRDDPVF_ REV__ENSG00000196642|ENST00000311502|RABL6;REV__nc|ENSG00000196642|Q3YEC7-2|RABL6 32.30548876998284 0.3297748069446609 1 DPV{M(Oxidation (M))|F} 4 -1 48.175 0 0 4.9387 0 0 499.2387867658219 0 499.2387867658219 0 36.75534203253535 0 0 0 1.274227503252014 0 0.3494850021680094 0 DPV{M(Oxidation (M))|F} 4.9387 + + 17 NaN NaN 133170.1 NaN 7683 2578 10253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10265 49.842 NaN 586660 35 0 125120 0.327 + 7559 FYDDKVSAL 9 78 529.2631013486327 1056.5116497640654 2 529.262939453125 MULTI HCD FTMS 0 0 0 10264 235225.515625 0.922763021424416 1 -0.019718170166015625 1 Unmodified _FYDDKVSAL_ ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 71.70789743142352 0.008535567138151097 1 [Y{M(Oxidation (M))|F}]DDKVSA{I|L} 9 0 + 61.838 0 0 5.853 5.853 86.767 0 0 0 5.6424927368725974 46.12449708633612 5.6424927368725974 8.979400086720375 0 2.305462187404089 0 0.2742275032520141 0 + + [Y{M(Oxidation (M))|F}]DDKVSA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}DKVSA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}DKWA{I|L};[Y{M(Oxidation (M))|F}]DDK[K{I|L}]E;[Y{M(Oxidation (M))|F}][SG][DV]VSA{I|L};[Y{M(Oxidation (M))|F}]{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SA{I|L};{[SA]|[TG]}{[CP]|[EA]}[Y{M(Oxidation (M))|F}]VSA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}DK[K{I|L}]E;[Y{M(Oxidation (M))|F}]{[TV]|[{I|L}S]}G{[CP]|[EA]}SA{I|L};[Y{M(Oxidation (M))|F}][SG]{I|L}{[CP]|[EA]}SA{I|L} 5.853;5.0031;4.3145;3.1686;2.6701;2.4497;2.3784;2.3187;2.1647;1.6498 +;-;-;-;-;-;-;-;-;- + 304 NaN NaN 173801.5 NaN 7684 2579 10264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10266 49.846 NaN 341270 35 0 25102 0.261 + 1349 AYPHNLMTF 9 74 555.2577483138126 1108.5009436944251 2 555.2582397460938 MULTI HCD FTMS 0 0 0 10264 138248.734375 0.09611015984934378 32 -0.8780746459960938 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 68.08070601005525 0.009709267492204555 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 74.469 0 0 6.718 6.718 90.804 0 0 0 24.76203644159419 58.98477682686695 24.76203644159419 12.09544243948811 0 1.305462187404089 2 0.4247425010840047 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}G[SG]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][QA]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 6.718;5.6269;4.8516;4.6533;4.4212 -;-;-;-;- 673 NaN NaN 140176.8 NaN 7685 2579 10264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10267 49.85 NaN 318800 35 0 102780 0.263 + 29172 TYISAIRERF 10 54 419.23114777625347 1254.6716139289604 3 419.2312927246094 MULTI HCD FTMS 0 0 0 10264 69123.7421875 0.5977385506967922 2 -0.052639007568359375 3 Unmodified _TYISAIRERF_ ENSG00000162231|ENST00000294172|NXF1 7.0370850670814 0.43805529467587806 1 TY{I|L} 3 7 50.445 0 0 4.0206 0 0 0 874.4537156671282 874.4537156671282 34.24742501084005 0 0 0 0 0.4247425010840047 2 0 0 + TY{I|L} 4.0206 + + 10 + NaN NaN 140278 NaN 7686 2579 10264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10268 49.853 NaN 163110 35 0 11190 0.261 + 12970 KYIHFTPNF 9 51 583.8046369512879 NaN 0 583.8037109375 PEAK HCD FTMS 0 0 0 10264 58826.65625 0.2604035366519002 5 -0.14479827880859375 4 Unmodified _KYIHFTPNF_ ENSG00000137975|ENST00000370565|CLCA2 24.990960013464015 0.1538978316896649 1 T{M(Oxidation (M))|F}H 3 8 31.555 0 0 2.7072 0 0 376.17631823414916 401.2194002740844 777.3957185082336 0 0 0 0 0 1.4247425010840047 0 0.3494850021680094 0 T{M(Oxidation (M))|F}H 2.7072 - 51 + NaN NaN 115073.4 NaN 7687 2579 10264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10269 49.856 NaN 289310 35 0 21811 0.262 -1 FPDKEVML 8 53 497.7493901552482 993.4842273772964 2 497.7494201660156 MULTI HCD FTMS 0 0 0 10264 92115.8046875 0.7885926102593218 5 -0.14479827880859375 5 Oxidation (M) _FPDKEVM(Oxidation (M))L_ ENSG00000104823|ENST00000221418|ECH1;ENST00000601333.1_1_19:39306255-39306727:-|nuORF 31.26834338654808 0.3430981728743429 1 HDPE 4 -1 28.889 0 0 2.9078 0 0 497.29133803535314 0 497.29133803535314 0 7.730012720637376 0 0 0 0.6861818737241735 0 0 0 HDPE 2.9078 - 77 NaN NaN 134341.2 NaN 7688 2579 10264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10271 49.861 NaN 767860 35 0 129820 0.326 + 15246 LPAAGVGDMVM 11 86 546.7568773865822 1091.4992018399644 2 546.7572021484375 MULTI HCD FTMS 0 0 0 10270 396021.71875 0.45755031062395074 10 -0.2826995849609375 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 149.9946105101851 9.732271159423064E-05 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 96.802 0 0 8.8688 8.8688 88.259 0 0 0 0.7918124604762511 6.192803136799171 0.7918124604762511 0.7918124604762511 0 3.579689690656103 0 0.805462187404089 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAGV[EC]SV{M(Oxidation (M))|F};[PA]{I|L}AGV[EC]SV{M(Oxidation (M))|F};[PA]AG{I|L}VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]Q{I|L}VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GV[EC]SV{M(Oxidation (M))|F} 8.8688;8.7962;8.2458;7.8082;7.7357;7.3823;7.3097;7.0134;6.8481;6.7593 +;-;-;-;-;-;-;-;-;- + 2625 NaN NaN 204748.7 NaN 7689 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10272 49.866 NaN 827380 35 0 136800 0.261 + 23125 RFDSDVGEF 9 64 536.240949141403 1070.467345349606 2 536.2409057617188 MULTI HCD FTMS 0 0 0 10270 307685.53125 0.9949450083726078 1 -0.03292083740234375 2 Unmodified _RFDSDVGEF_ ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000223865|ENST00000418931|HLA-DPB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;nc|ENSG00000232629|P05538-2|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2 34.93206674587334 0.08860942999206235 1 V[MN]VGE{M(Oxidation (M))|F} 7 5 48.346 0 0 4.5163 0 0 276.11046034980626 0 276.11046034980626 0 39.393426046896494 0 0 0 1.274227503252014 0 0.3252574989159953 0 V[MN]VGE{M(Oxidation (M))|F} 4.5163 - 142 NaN NaN 206791.4 NaN 7690 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10273 49.869 NaN 827800 35 0 79436 0.261 + 8959 HPDVEVDGF 9 87 507.7298557632807 1013.4451585933614 2 507.7298889160156 MULTI HCD FTMS 0 0 0 10270 213805.890625 0.9312340266717917 1 -0.03292083740234375 3 Unmodified _HPDVEVDGF_ ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion 48.345845343767074 0.03388484103555672 1 VDG{M(Oxidation (M))|F} 4 5 50.65 0 0 4.9978 0 0 577.2495850729871 0 577.2495850729871 0 19.88728383729587 0 0 0 2 0 0.9247425010840047 0 + VDG{M(Oxidation (M))|F} 4.9978 + + 393 + NaN NaN 211581.6 NaN 7691 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10274 49.873 NaN 324740 35 0 48501 0.261 + 16239 LPYGREDVL 9 56 531.2849318459457 1060.5553107586913 2 531.2850341796875 MULTI HCD FTMS 0 0 0 10270 148622.65625 0.3746347627628914 4 -0.12508010864257812 4 Unmodified _LPYGREDVL_ CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;ENSG00000163131|ENST00000368985|CTSS;nc|ENSG00000163131|P25774-2|CTSS 26.268140514670165 0.13340543277302316 1 {I|L}PY 3 6 48.232 0 0 4.5478 0 0 0 684.3344807355121 684.3344807355121 33.767959391884546 0 0 0 0 0.805462187404089 1.3979400086720375 0 0 + {I|L}PY 4.5478 + + 71 + NaN NaN 144814.8 NaN 7692 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10275 49.876 NaN 403270 35 0 25815 0.261 + 14064 KYVLPKFEL 9 81 568.8391746939456 1135.663796454691 2 568.8231811523438 MULTI HCD FTMS 0 0 0 10270 63359.7578125 0.5399329248908573 -3 0.07567977905273438 5 Unmodified _KYVLPKFEL_ CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant;ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 26.268140514670165 0.13340543277302316 1 [YK]{I|L}D{I|L}[KP]{M(Oxidation (M))|F}{I|L} 9 3 + 43.857 0 0 3.8618 3.8618 87.104 0 0 0 13.886416395758786 13.943000625042629 13.886416395758786 16.196414118408153 0 0.4247425010840047 0 0.2302046884880938 1.0986198691406328 [YK]{I|L}D{I|L}[KP]{M(Oxidation (M))|F}{I|L};KY{M(Oxidation (M))|F}{I|L}K[VP]E{I|L};KY{M(Oxidation (M))|F}{I|L}K{[QN]|[E{I|L}]|[KN]}[VP];[EP]V{[HG]|PP}{I|L}[KP]{M(Oxidation (M))|F}{I|L};[YK]{I|L}{M(Oxidation (M))|F}[DP][K{I|L}]{I|L};K[Y{I|L}]D{I|L}[KP]{M(Oxidation (M))|F}{I|L};[VP]E{[HG]|PP}{I|L}[KP]{M(Oxidation (M))|F}{I|L};K[Y{I|L}]{M(Oxidation (M))|F}K[VP]E{I|L};[EP]VK[Y{M(Oxidation (M))|F}][K{I|L}]{I|L};[VP]EK[Y{M(Oxidation (M))|F}][K{I|L}]{I|L} 3.8618;2.4356;1.795;1.5309;1.451;1.3607;1.2991;1.0957;0.77664;0.54484 -;-;-;-;-;-;-;-;-;- 750 NaN NaN 147785.9 NaN 7693 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10276 49.879 NaN 284440 35 0 37828 0.261 + 34352 YPEGFEIHSM 10 54 613.2633828160687 1224.5122126989372 2 613.263671875 MULTI HCD FTMS 0 0 0 10270 168725.90625 0.496549362813203 -10 0.2827186584472656 6 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 110.6747026088012 5.03479218847684E-05 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 115.58 0 0 9.4391 9.4391 97.172 0 0 0 95.40607512240769 14.814309196763702 14.814309196763702 28.1259189508755 0 2.2856668758921828 1.5228787452803376 1.9361818737241734 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};YPE{I|L}E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPEG{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HS]{[QN]|[E{I|L}]|[KN]};{[MG]|[TS]}[WQ]E{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE]GHS{M(Oxidation (M))|F};{[MG]|[TS]}[WQ]E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};{[MG]|[TS]}[WQ]EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 9.4391;7.1422;6.511;5.6515;5.2532;4.9459;4.7845;4.6678;3.6293;3.2396 +;-;-;-;-;-;-;-;-;- + 838 + NaN NaN 123410.1 NaN 7694 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10277 49.883 NaN 318600 35 0 80363 0.261 + 19891 NYENKQYLF 9 57 609.793022337946 1217.571491742692 2 610.294921875 MULTI HCD FTMS 0 0 0 10270 63167.96875 0.7624213722019404 -1 0.019718170166015625 7 Unmodified _NYENKQYLF_ ENSG00000158023|ENST00000288912|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251 40.23920728925047 0.06424668180817725 1 [YN]EN[KQ]Y{I|L}{M(Oxidation (M))|F} 9 0 + 60.441 0 0 4.964 4.964 86.205 0 0 0 17.772336398234003 60.440768638342774 17.772336398234003 9.208187539523749 0 1.6861818737241734 1.3010299956639813 0 0.4247425010840047 + + [YN]EN[KQ]Y{I|L}{M(Oxidation (M))|F};[YN]EGG[KQ]Y{I|L}{M(Oxidation (M))|F} 4.964;4.2078 +;- + 69 NaN NaN 135622.3 NaN 7695 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10278 49.886 NaN 187220 35 0 18468 0.261 + 7197 FSLMHTKQL 9 70 552.7957470548157 1103.5769411764313 2 552.7955932617188 MULTI HCD FTMS 0 0 0 10270 53755.9609375 0.6987981699611652 1 -0.03292083740234375 8 Unmodified _FSLMHTKQL_ ENST00000263056.5_1_10:30726187-30726295:+|nuORF 15.847184025352803 0.2234401846867398 1 S{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4 6 26.643 0 0 2.4143 0 0 576.3026600568375 0 576.3026600568375 0 10.445312593723983 0 0 0 0.4247425010840047 0 0 0 S{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.4143 - 75 NaN NaN 115455.1 NaN 7696 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10279 49.889 NaN 125890 35 0 28557 0.261 + -1 YDKCHTPQF 9 49 598.2658120284462 NaN 0 598.2525024414062 PEAK HCD FTMS 0 0 0 10270 6026.9248046875 1 0 0 9 Carbamidomethyl (C) _YDKC(Carbamidomethyl (C))HTPQF_ REV__ENST00000554411.5_1_14:24774740-24774824:-|nuORF 3.944395688203298 0.27613285122220627 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114468.3 NaN 7697 2580 10270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10281 49.894 NaN 644990 35 0 58315 0.327 + 24397 RYKGPGFEYF 10 94 632.3116118557924 1262.6086707783847 2 632.3115234375 MULTI HCD FTMS 0 0 0 10280 447146.34375 1 0 0 1 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 78.61045856554632 0.007382707188123376 1 [YR]KGPG{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 10 0 + 91.732 0 0 7.2653 7.2653 92.762 0 0 0 21.51741229020267 60.46281935349329 21.51741229020267 16.07963467823147 0 1.6307196863200843 1.3010299956639813 0.805462187404089 0.7984550065040281 + + [YR]KGPG{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]KGPG{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YR]KGPGYE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KGPGY{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YR]KGY[PG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KGPG{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}E;[YR]KGY[PG]{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YR]KYG[PG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 7.2653;5.9917;5.6994;5.4226;5.1458;4.9679;4.921;4.6911;4.428;4.4258 +;-;-;-;-;-;-;-;-;- + 5092 NaN NaN 186730.9 NaN 7698 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10282 49.899 NaN 367690 35 0 19854 0.261 + 34248 YPDRIMNTF 9 78 586.7737018509798 1171.5328507687595 2 586.7738037109375 MULTI HCD FTMS 0 0 0 10280 221009.8125 0.055196756148249156 58 -1.6511688232421875 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 79.42699986076722 0.0060377907040421955 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 79.452 0 0 6.7819 6.7819 87.083 0 0 0 8.694028404633158 8.694028404633158 8.694028404633158 5.6246936830414995 0 1.916386562212267 1.5228787452803376 0.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DS[{M(Oxidation (M))|F}V][VS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.7819;6.3018;6.0398;5.9959;5.5962;5.5158;5.2538;4.8102;1.508 +;-;+;-;-;-;-;-;- + 926 NaN NaN 145426.2 NaN 7699 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10283 49.902 NaN 228930 35 0 51747 0.261 + -1 MFTRFNEEI 9 56 601.7790637740396 1201.5435746148792 2 601.7796020507812 MULTI HCD FTMS 0 0 0 10280 155738.265625 0.4892537199435784 16 -0.437103271484375 3 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 24.020572477871973 0.15282392193088168 1 E{[DS]|[MA]|[CV]|TT}NVE{I|L} 7 -1 53.276 0 0 4.4339 0 0 397.17048842597814 0 397.17048842597814 0 45.316978991741976 0 0 0 0.4247425010840047 0 0.3494850021680094 1.2302046884880937 E{[DS]|[MA]|[CV]|TT}NVE{I|L} 4.4339 - 113 NaN NaN 115218.8 NaN 7700 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10284 49.906 NaN 185370 35 0 12599 0.261 + -1 VCVERIHDA 9 67 549.7712753498084 1097.5279977664168 2 549.7723388671875 MULTI HCD FTMS 0 0 0 10280 44428.953125 0.8136711605321615 1 -0.0262603759765625 4 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VERIHDA_ REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF 20.453626601364224 0.18364154288633264 1 [YR]KYE 5 -1 50.63 0 0 4.6131 0 0 0 355.1361053307094 355.1361053307094 34.43189054624234 0 0 0 0 1.579689690656103 1.3010299956639813 0.5 0 [YR]KYE 4.6131 - 181 NaN NaN 110212.2 NaN 7701 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10285 49.909 NaN 94372 35 0 11742 0.261 -1 LPGGEFSTCF 10 36 557.747745756273 1113.480938579346 2 557.7479248046875 MULTI HCD FTMS 0 0 0 10280 23055.548828125 0.19853790135988336 12 -0.325164794921875 5 Carbamidomethyl (C) _LPGGEFSTC(Carbamidomethyl (C))F_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 3.5964929083625545 0.45626689593999237 1 {I|L}PAAR 5 -1 43.003 0 0 3.862 0 0 0 602.1579683893186 602.1579683893186 27.518572025801546 0 0 0 0 0.805462187404089 0 0 0 {I|L}PAAR 3.862 - 22 + NaN NaN 104524 NaN 7702 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10286 49.912 NaN 318640 35 0 26737 0.261 + 1105 AYINRASLL 9 70 510.79525728647076 1019.5759616397415 2 510.79498291015625 MULTI HCD FTMS 0 0 0 10280 109376.6015625 0.25837928357050727 -4 0.10860061645507812 6 Unmodified _AYINRASLL_ ENSG00000138663|ENST00000264389|COPS4;nc|ENSG00000138663|Q9BT78-2|COPS4 92.65332237495696 0.004456439685314431 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NRAS{I|L}{I|L} 9 0 + 89.007 0 0 8.7298 8.7298 88.026 0 0 0 8.393943874995173 8.393943874995173 8.393943874995173 0.6812779123253421 0 2.579689690656103 1.6989700043360187 0.7302046884880937 0.3054621874040891 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[QA]AAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GGRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[QA][QT]{I|L}{I|L} 8.7298;8.663;7.0034;5.9838 +;-;-;- + 589 NaN NaN 139432.6 NaN 7703 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10287 49.916 NaN 114140 35 0 26529 0.261 -1 NEAVECLL 8 43 474.2288475077548 946.4431420823096 2 474.22845458984375 MULTI HCD FTMS 0 0 0 10280 37251 0.5476919733462197 -2 0.052639007568359375 7 Carbamidomethyl (C) _NEAVEC(Carbamidomethyl (C))LL_ ENSG00000136628|ENST00000366923|EPRS1 7.289230182591677 0.5311777711368266 1 {I|L}{I|L} 2 -1 25.969 0 0 2.7439 0 0 702.2641468732437 0 702.2641468732437 0 20.48455006504028 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.7439 + + 7 NaN NaN 110819.5 NaN 7704 2581 10280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10289 49.92 NaN 1819800 35 0 776730 0.327 + 24403 RYKGPGFEYF 10 59 421.8765733280575 1262.6078905843724 3 421.8767395019531 MULTI HCD FTMS 0 0 0 10288 724565.1875 0.9356440230300097 1 -0.0329437255859375 1 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 11.517880264261096 0.4033776509493788 1 RY{M(Oxidation (M))|F} 3 7 36.198 0 0 2.8669 0 0 778.3647208871724 0 778.3647208871724 0 33.09894379144197 0 0 0 1 0 0 0 RY{M(Oxidation (M))|F} 2.8669 - 19 NaN NaN 355339.6 NaN 7705 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10290 49.925 NaN 625180 35 0 78224 0.261 + 10471 IPDMPNIL 8 56 456.7473914198728 NaN 0 456.7610778808594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IPDMPNIL_ REV__ENSG00000176438|ENST00000682763|SYNE3;REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF;REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 15.768221252438446 0.38723490340397554 1 {I|L}ADRP 5 -1 28.532 0 0 3.1303 0 0 131.06642840949308 225.08716760806877 356.1535960175619 0 0 0 0 0 0.3494850021680094 0 0.6989700043360187 0 {I|L}ADRP 3.1303 - 196 + NaN NaN 174560 NaN 7706 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10291 49.929 NaN 489520 35 0 28202 0.261 + 24671 RYLSPKYIKMF 11 69 482.60394014715575 1444.7899910416672 3 482.6039733886719 MULTI HCD FTMS 0 0 0 10288 202232.5625 0.620997295185407 2 -0.06589889526367188 3 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 66.61675797227278 0.01860382518341708 1 SPKY{I|L}KM{M(Oxidation (M))|F} 8 3 83.837 0 0 5.8027 0 0 432.24654527753404 0 432.24654527753404 0 69.11481637459161 0 0 0 3.048455006504028 0 2.1237125054200234 0 + SPKY{I|L}KM{M(Oxidation (M))|F} 5.8027 + + 643 NaN NaN 161218.8 NaN 7707 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10292 49.932 NaN 461570 35 0 104710 0.261 + 10441 IPDEINDRVRF 11 58 458.57710692356954 1372.7094913709086 3 458.5770263671875 MULTI HCD FTMS 0 0 0 10288 121342.9921875 0.8322050915066971 1 -0.0329437255859375 4 Unmodified _IPDEINDRVRF_ ENSG00000114209|ENST00000392750|PDCD10 11.065280125700339 0.3606702632373656 1 {I|L}PD 3 8 55.005 0 0 4.007 0 0 0 1044.5220471387186 1044.5220471387186 40.400990676322905 0 0 0 0 0.8807196863200843 2 0 0 + {I|L}PD 4.007 + + 40 + NaN NaN 166162.1 NaN 7708 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10293 49.935 NaN 110520 35 0 8570.6 0.261 + 12971 KYIHFTPNF 9 45 583.8046369512879 NaN 0 583.8042602539062 PEAK HCD FTMS 0 0 0 10288 27670.9140625 0.12248875498963617 8 -0.22351837158203125 5 Unmodified _KYIHFTPNF_ ENSG00000137975|ENST00000370565|CLCA2 21.590151480376914 0.17672478954671048 1 T{M(Oxidation (M))|F}H 3 8 30.203 0 0 2.5912 0 0 376.17216036163126 401.21470056705317 777.3868609286844 0 0 0 0 0 1.75 0 0 0 T{M(Oxidation (M))|F}H 2.5912 - 47 + NaN NaN 108727.2 NaN 7709 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10294 49.938 NaN 224870 35 0 27773 0.263 + 15190 LMYQSFRRLF 10 54 454.24535707869506 1359.7142418362853 3 454.2453918457031 MULTI HCD FTMS 0 0 0 10288 63180.6328125 0.8437185742485753 -1 0.0262603759765625 6 Unmodified _LMYQSFRRLF_ REV__ENSG00000197653|ENST00000673944|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 12.174745833636585 0.39723355204102767 1 {I|L}M 2 -1 36.995 0 0 2.7208 0 0 0 1112.5702527435485 1112.5702527435485 17.56498736291583 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 {I|L}M 2.7208 + + 39 + NaN NaN 122133.2 NaN 7710 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10295 49.942 NaN 154560 35 0 14119 0.261 -1 0 65 548.2560646910604 547.2487882244603 1 549.2679443359375 MULTI HCD FTMS 0 0 0 10288 10393.5302734375 0.604219097637562 -6 0.17442703247070312 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 2.6686 0 0 382.2024453062947 0 382.2024453062947 0 10.16711877743475 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.6686 - 16 + NaN NaN 107050.7 NaN 7711 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10296 49.945 NaN 80807 35 0 6683.5 0.261 + 21469 PYAKPIPAQF 10 46 566.3135377406946 1130.6125225481892 2 566.3133544921875 MULTI HCD FTMS 0 0 0 10288 15897.341796875 0.28794941335284446 5 -0.14133453369140625 8 Unmodified _PYAKPIPAQF_ ENSG00000136709|ENST00000322313|WDR33 9.38312468134398 0.42334543440173333 1 EQ[VS] 4 10 17.435 0 0 1.5421 0 0 669.3843861310562 0 669.3843861310562 0 0.44531259372398324 0 0 0 0.4247425010840047 0 0 0 EQ[VS] 1.5421 - 23 NaN NaN 100407.5 NaN 7712 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10297 49.948 NaN 31825 35 0 4194.5 0.261 + 4087 ESPNRHLYDF 10 29 639.3011444685999 1276.5877360039997 2 639.3006591796875 MULTI HCD FTMS 0 0 0 10288 21179.50390625 0.6737584228299466 1 -0.0329437255859375 9 Unmodified _ESPNRHLYDF_ ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant;ENSG00000124406|ENST00000381668|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 0.6976657623105312 0.47161084886498755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88145.7 NaN 7713 2582 10288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10299 49.953 NaN 1014700 35 0 230890 0.327 -1 0 73 411.5677977526689 1231.6815638582068 3 411.5679931640625 MULTI HCD FTMS 0 0 0 10298 393742.28125 0.2207027010476367 12 -0.32532501220703125 1 NaN NaN 1 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 5 -1 34.208 0 0 2.7774 0 0 547.2764156039968 0 547.2764156039968 0 14.744237387763093 0 0 0 1.5 0 0 0 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 2.7774 - 49 NaN NaN 252688.7 NaN 7714 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10300 49.958 NaN 594620 35 0 81063 0.261 + 24786 RYPDRITLI 9 84 573.8350666957131 1145.655580458226 2 573.835205078125 MULTI HCD FTMS 0 0 0 10298 305703.625 0.12984050449042348 9 -0.24301910400390625 2 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 79.59630418116434 0.005983006570063981 1 RYPD{I|L} 5 4 52.44 0 0 4.5773 0 0 0 498.3040703897771 498.3040703897771 29.842509624031234 0 0 0 0 0.9247425010840047 1.2218487496163564 0.3807196863200844 0 RYPD{I|L} 4.5773 - 257 + NaN NaN 170021.5 NaN 7715 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10301 49.961 NaN 956890 35 0 153830 0.261 -1 0 63 500.2536832441926 998.4928135551852 2 500.25360107421875 MULTI HCD FTMS 0 0 0 10298 472374.625 0.24713230816396572 -4 0.11184310913085938 3 NaN NaN 1 STQEPE{I|L} 7 -1 70.583 0 0 7.0689 0 0 196.121385642775 0 196.121385642775 0 50.89017289158441 0 0 0 1.8494850021680094 0 1.341129063296272 0.4247425010840047 STQEPE{I|L} 7.0689 - 433 NaN NaN 231792.2 NaN 7716 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10302 49.965 NaN 741000 35 0 94703 0.261 + 16121 LPTEQEVRF 9 86 559.7955710174537 1117.5765891017072 2 559.7957763671875 MULTI HCD FTMS 0 0 0 10298 245070.46875 0.8118078908018284 -2 0.0592041015625 4 Unmodified _LPTEQEVRF_ ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 110.5527297667825 0.0028521687250969148 1 {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F} 9 0 + 84.425 0 0 7.5543 7.5543 92.786 0 0 0 55.145432163307774 10.999161495794425 10.999161495794425 13.789850105233299 0 2.173877368056628 1.5228787452803376 0.805462187404089 0.6549471895720985 + + {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};{I|L}PTE[Q{I|L}]DR{M(Oxidation (M))|F};{I|L}PT[HQ]TEP[VP];{I|L}PT[HQ]T[{I|L}P][DP];{I|L}P{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}DR{M(Oxidation (M))|F};{I|L}M[VP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};{I|L}P{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[YQ];[DP]QTE{I|L}{I|L}R{M(Oxidation (M))|F};{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}EE{I|L}[YQ];[DP]QT[KQ]V[VG]{M(Oxidation (M))|F} 7.5543;6.3204;4.3496;4.3138;3.8376;3.6151;2.4659;2.2076;2.1965;1.8945 +;-;-;-;-;-;-;-;-;- + 1214 + NaN NaN 196056.8 NaN 7717 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10303 49.968 NaN 453780 35 0 21080 0.261 + 6776 FPQYPDKEL 9 79 568.784702871986 1135.554852810772 2 568.78466796875 MULTI HCD FTMS 0 0 0 10298 158288.203125 0.7229576131371828 -5 0.14813995361328125 5 Unmodified _FPQYPDKEL_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 71.70789743142352 0.008535567138151097 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]KE{I|L} 9 0 + 56.92 0 0 5.0125 5.0125 82.104 0 0 0 2.3978685854810777 1.4916623986031396 1.4916623986031396 1.4916623986031396 0 1.805462187404089 1.3979400086720375 0.5554621874040891 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]K{I|L}E;[EP]VK{M(Oxidation (M))|F}YQPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{I|L}VYQPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]Y[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]Y[DP]K{I|L}E;[EP]VK{M(Oxidation (M))|F}Y[AG]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}[DP]KE{I|L};[QP]Y{I|L}VYQPE;[EP]VK{M(Oxidation (M))|F}QYPE 5.0125;4.8812;4.8014;4.6924;4.2016;4.0703;3.9905;3.9567;3.8308;3.8297 +;-;-;-;-;-;-;-;-;- + 2239 NaN NaN 149758.7 NaN 7718 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10304 49.971 NaN 264340 35 0 20537 0.261 + 1350 AYPHNLMTF 9 49 555.2577483138126 1108.5009436944251 2 555.25830078125 MULTI HCD FTMS 0 0 0 10298 118865.859375 0.08263523566279207 36 -1.0198707580566406 6 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 68.08070601005525 0.009709267492204555 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 3 + 43.807 0 0 3.9519 3.9519 88.028 0 0 0 4.139524373105921 29.202418316308545 4.139524373105921 22.446049681132937 0 1.25 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[QP][HV]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][HN][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.9519;1.927;1.6518 -;-;- 170 NaN NaN 121842.1 NaN 7719 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10305 49.975 NaN 300330 35 0 54440 0.261 + 28755 TTEKRLYHI 9 50 580.8249375679547 1159.6353222027094 2 580.8143310546875 MULTI HCD FTMS 0 0 0 10298 15848.333984375 0.2536157451323893 8 -0.2135009765625 7 Unmodified _TTEKRLYHI_ REV__ENST00000550641.5_1_12:70672019-70679204:+|nuORF;REV__ENST00000551132.5_1_12:70672019-70695521:+|nuORF;REV__ENST00000552319.5_1_12:70672016-70688026:+|nuORF 7.289230182591677 0.29575926068275815 1 YH{I|L} 3 -1 26.198 0 0 2.2591 0 0 728.3971113543048 0 728.3971113543048 0 15.740312677277187 0 0 0 0 0 0 0 YH{I|L} 2.2591 + + 41 NaN NaN 149263.3 NaN 7720 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10306 49.978 NaN 431410 35 0 72814 0.261 + 21975 QEQLLKEGF 9 86 546.2898191824546 1090.5650854317091 2 546.2907104492188 MULTI HCD FTMS 0 0 0 10298 75012.03125 1 0 0 8 Unmodified _QEQLLKEGF_ ENSG00000117228|ENST00000370473|GBP1 29.84058131909904 0.11198220037953927 1 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 8 48.194 0 0 4.4192 0 0 280.23843855846536 0 280.23843855846536 0 -4.021945331830032 -4.021945331830032 0 0 0.3252574989159953 0 0.5994850021680094 0 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.4192 - 1415 + NaN NaN 149322 NaN 7721 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10307 49.981 NaN 337910 35 0 29145 0.263 + 4788 EYVEKFYRI 9 72 416.22019191672985 1245.6387463503895 3 416.2276916503906 MULTI HCD FTMS 0 0 0 10298 31170.818359375 0.011939660661067136 40 -1.1249465942382812 9 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 1 [YE]VEK[YR]{I|L}{M(Oxidation (M))|F} 9 2 + 33.35 0 0 2.6774 2.6774 80.126 0 0 0 4.0039247104859115 2.781512503836442 2.781512503836442 2.781512503836442 0 0.5 0 0.4247425010840047 0 [YE]VEK[YR]{I|L}{M(Oxidation (M))|F};[YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 2.6774;2.4541 -;+ + 74 + NaN NaN 155130 NaN 7722 2583 10298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10309 49.986 NaN 4405900 35 0 589220 0.327 + 24842 RYPTSIASL 9 104 504.2796071581441 1006.5446613830882 2 504.2797546386719 MULTI HCD FTMS 0 0 0 10308 2953974.75 0.6347045058926071 -5 0.14479827880859375 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 106.94017166704063 0.003441928997083001 1 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 80.287 0 0 7.9765 0 0 0 128.07137637484678 128.07137637484678 56.72573839671307 0 0 0 0 1.3494850021680094 1.6989700043360187 2.2689301784845295 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 7.9765 - 2347 NaN NaN 752938.9 NaN 7723 2584 10308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10310 49.991 NaN 636850 35 0 46780 0.261 + 2675 DVHGPDWHL 9 75 538.2513849822252 1074.4882170312503 2 538.2515258789062 MULTI HCD FTMS 0 0 0 10308 244849.5 0.05263793219463756 17 -0.4634208679199219 2 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 85.27202061508552 0.004649858145912257 1 [HV]DGPDWH{I|L} 9 2 + 60.908 0 0 5.6686 5.6686 82.477 0 0 0 0.025749891599531338 0.025749891599531338 0.025749891599531338 0.025749891599531338 0 1.774227503252014 0 0.7302046884880937 0 [HV]DGPDWH{I|L};DVHGPDWH{I|L};{[QN]|[E{I|L}]|[KN]}{[HG]|PP}{[ET]|[MV]}G[W{M(Oxidation (M))|F}] 5.6686;5.6662;0.46001 -;+;- + 229 NaN NaN 189152.9 NaN 7724 2584 10308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10311 49.994 NaN 206660 35 0 53835 0.261 + 21835 QATAQDPVF 9 32 488.7404439022212 975.4663348712425 2 488.740478515625 MULTI HCD FTMS 0 0 0 10308 147832.203125 0.7523406125176609 3 -0.07543563842773438 3 Unmodified _QATAQDPVF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 26.268140514670165 0.13340543277302316 1 DPV{M(Oxidation (M))|F} 4 5 44.68 0 0 4.5804 0 0 499.23961074043126 0 499.23961074043126 0 44.680475292681265 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + DPV{M(Oxidation (M))|F} 4.5804 + + 8 NaN NaN 133883.7 NaN 7725 2584 10308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10312 49.998 NaN 196370 35 0 30493 0.261 + 7560 FYDDKVSAL 9 60 529.2631013486327 1056.5116497640654 2 529.2634887695312 MULTI HCD FTMS 0 0 0 10308 46006.33984375 0.18047765373623995 6 -0.15761947631835938 4 Unmodified _FYDDKVSAL_ ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 51.41523569358685 0.02959097413485123 1 [Y{M(Oxidation (M))|F}]DDKVSA{I|L} 9 0 + 46.882 0 0 4.4374 4.4374 88.598 0 0 0 5.6424927368725974 26.397606456540572 5.6424927368725974 21.943284706245905 0 1.305462187404089 0 0.3807196863200844 0 + + [Y{M(Oxidation (M))|F}]DDKVSA{I|L};[Y{M(Oxidation (M))|F}][SG][DV]VSA{I|L};[Y{M(Oxidation (M))|F}]{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SA{I|L};[Y{M(Oxidation (M))|F}]DDK[K{I|L}]E;[Y{M(Oxidation (M))|F}]DDK{[QN]|[E{I|L}]|[KN]}K 4.4374;2.3605;2.2855;1.6311;1.2871 +;-;-;-;- + 183 NaN NaN 115669.5 NaN 7726 2584 10308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10313 50.001 NaN 194410 35 0 29005 0.261 -1 KYMVYPQTF 9 45 596.7894210916821 1191.5642892501642 2 596.78955078125 MULTI HCD FTMS 0 0 0 10308 76176.5546875 0.8322769613428966 -3 0.09215927124023438 5 Oxidation (M) _KYM(Oxidation (M))VYPQTF_ ENSG00000112996|ENST00000507110|MRPS30 24.990960013464015 0.14443998892849796 1 VY[QP]T{M(Oxidation (M))|F} 6 -1 36.159 0 0 3.0346 0 0 438.1964588849625 0 438.1964588849625 0 26.694699959806982 0 0 0 1.4247425010840047 0 0 0 VY[QP]T{M(Oxidation (M))|F} 3.0346 + + 44 NaN NaN 107872.5 NaN 7727 2584 10308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10314 50.004 NaN 153160 35 0 18190 0.263 + 27688 TANLEAQAL 9 47 465.74806923887564 929.4815855445513 2 465.7480773925781 MULTI HCD FTMS 0 0 0 10308 100663.578125 1 0 0 6 Unmodified _TANLEAQAL_ ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;LGALS3BP-KRT14|1|fusion 47.594388314883695 0.03493607795751234 1 EAQA{I|L} 5 4 64.09 0 0 6.8952 0 0 399.216112205275 0 399.216112205275 0 58.51678483244885 0 0 0 1.8494850021680094 0 0.3807196863200844 0.805462187404089 + EAQA{I|L} 6.8952 + + 97 NaN NaN 123739.8 NaN 7728 2584 10308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10316 50.009 NaN 504250 35 0 80404 0.327 + 15247 LPAAGVGDMVM 11 63 546.7568773865822 1091.4992018399644 2 546.7572631835938 MULTI HCD FTMS 0 0 0 10315 242947.1875 0.2806930929361818 15 -0.41423797607421875 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 123.45060196383646 0.01485549788078869 1 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 3 87.772 0 0 8.0414 0 0 281.174120017775 0 281.174120017775 0 57.0039605950474 0 0 0 3.579689690656103 0 0.805462187404089 0 + AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.0414 + + 662 NaN NaN 158354.4 NaN 7729 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10317 50.014 NaN 244390 35 0 19907 0.261 + 1351 AYPHNLMTF 9 56 555.2577483138126 1108.5009436944251 2 555.2579345703125 MULTI HCD FTMS 0 0 0 10315 91177.96875 0.06338668625732923 38 -1.0690574645996094 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 68.08070601005525 0.009709267492204555 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 3 + 52.94 0 0 4.7758 4.7758 87.047 0 0 0 8.91073692030254 34.23824890523761 8.91073692030254 10.726052125589973 0 1.6861818737241734 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[NV]|[RG]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 4.7758;3.8082 -;- 218 NaN NaN 123994 NaN 7730 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10318 50.017 NaN 465040 35 0 30916 0.261 + 8960 HPDVEVDGF 9 75 507.7298557632807 1013.4451585933614 2 507.7297058105469 MULTI HCD FTMS 0 0 0 10315 142366.796875 0.6200802285228024 6 -0.15761184692382812 3 Unmodified _HPDVEVDGF_ ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion 54.773552608820026 0.024892918755467567 1 VDG{M(Oxidation (M))|F} 4 5 54.412 0 0 5.3691 0 0 577.2490547555439 0 577.2490547555439 0 36.20796828021348 0 0 0 2 0 1 0 + VDG{M(Oxidation (M))|F} 5.3691 + + 254 + NaN NaN 161638.9 NaN 7731 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10319 50.021 NaN 521380 35 0 63069 0.261 -1 MPYTNYTF 8 59 526.7251668474756 1051.4357807617512 2 526.7091064453125 MULTI HCD FTMS 0 0 0 10315 37619.4453125 0.7327943851383304 1 -0.03285980224609375 4 Oxidation (M) _M(Oxidation (M))PYTNYTF_ ENSG00000113300|ENST00000261951|CNOT6;ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L 10.823927491677226 0.514154816617796 1 T{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.6591 0 0 785.3095123064762 0 785.3095123064762 0 19.886831541432315 0 0 0 0.8494850021680094 0 0 0 T{M(Oxidation (M))|F} 2.6591 + + 69 + NaN NaN 165334.4 NaN 7732 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10320 50.024 NaN 103540 35 0 14216 0.261 + -1 CKDVDECAKGD 11 48 620.2539010722553 1238.4932492113105 2 620.7420043945312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))KDVDECAKGD_ REV__MEGF6|p.E288K|1|0.23|ENSG00000162591|chr1:3512120-3512120|C/T|missense_variant 4.189502756095605 0.4005469306127019 1 TA[R{M(Oxidation (M))|F}] 4 -1 12.703 0 0 1.0257 0 0 745.2308723575981 0 745.2308723575981 0 7.2184874961635614 0 0 0 0 0 0 0 TA[R{M(Oxidation (M))|F}] 1.0257 - 17 + NaN NaN 114227.2 NaN 7733 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10321 50.027 NaN 193810 35 0 48534 0.262 + 7567 FYEWESSI 8 50 530.735296170375 1059.45603940755 2 530.7359619140625 MULTI HCD FTMS 0 0 0 10315 48789.24609375 0.6264886950565463 -5 0.14801406860351562 6 Unmodified _FYEWESSI_ ENSG00000112406|ENST00000367658|HECA 2.577480529830294 0.5381683276125971 1 YM 2 7 9.464 0 0 0.89328 0 0 209.03545942883744 553.2841890924436 762.3196485212811 0 0 0 0 0 0 0 0 0 YM 0.89328 - 11 + NaN NaN 115568.9 NaN 7734 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10322 50.031 NaN 73986 35 0 11757 0.261 + -1 HFAFMGVI 8 37 469.23461172400056 936.4546705148011 2 469.23382568359375 MULTI HCD FTMS 0 0 0 10315 30797.669921875 0.752883927469852 3 -0.08544540405273438 7 Oxidation (M) _HFAFM(Oxidation (M))GVI_ REV__SLC22A23|p.S548F|1|0.33|ENSG00000137266|chr6:3283912-3283912|G/A|missense_variant 6.354104778181461 0.5325651638111438 1 V{I|L} 2 -1 25.969 0 0 2.7731 0 0 706.2919178693375 0 706.2919178693375 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.7731 + + 2 NaN NaN 102809 NaN 7735 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10323 50.034 NaN 97273 35 0 7209.1 0.261 -1 0 45 491.2390963948756 490.2318199282756 1 491.2225646972656 MULTI HCD FTMS 0 0 0 10315 6252.55029296875 0.25580136607736226 5 -0.13468551635742188 8 NaN NaN 1 {[QN]|[E{I|L}]|[KN]}P 3 -1 24.437 0 0 4.9848 0 0 0 148.02959201349947 148.02959201349947 9.832881222565248 0 0 0 0 0 1.3979400086720375 0 0 {[QN]|[E{I|L}]|[KN]}P 4.9848 - 13 NaN NaN 101609.7 NaN 7736 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10324 50.037 NaN 44108 35 0 11756 0.261 + -1 RCVDKEKSNF 10 36 641.8139038085938 NaN 0 641.8139038085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _RC(Carbamidomethyl (C))VDKEKSNF_ REV__ENST00000470820.1_1_1:165865046-165865274:+|nuORF 3.5964929083625545 0.337106189561315 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100862.1 NaN 7737 2585 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10326 50.042 NaN 1120700 35 0 159850 0.327 + 16122 LPTEQEVRF 9 99 559.7955710174537 1117.5765891017072 2 560.2787475585938 MULTI HCD FTMS 0 0 0 10325 114353.2265625 0.606028523542729 2 -0.052585601806640625 1 Unmodified _LPTEQEVRF_ ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 93.93812099017352 0.0044227730261779084 1 {I|L}PTEQEVR{M(Oxidation (M))|F} 9 0 + 88.123 0 0 7.8852 7.8852 93.779 0 0 0 58.156797385979814 7.683240267568294 7.683240267568294 16.44881394567784 0 2.3213337517843655 1.3979400086720375 0.9581706663129559 0.8494850021680094 + + {I|L}PTEQEVR{M(Oxidation (M))|F};{I|L}PTE[{I|L}A][DG]R{M(Oxidation (M))|F};[{I|L}P]TEQEVR{M(Oxidation (M))|F};{I|L}PT[HT]QEP[VP];[{I|L}P]TE[AG]EVR{M(Oxidation (M))|F};{I|L}PT[HT]Q{I|L}P[DP];[{I|L}T]PEQEVR{M(Oxidation (M))|F};{I|L}PT[HT][AG]EP[VP];{I|L}PT[HT][AG]{I|L}P[DP];{I|L}[HA]VEQEP[VP] 7.8852;6.4133;5.2323;4.5407;4.4083;4.3414;3.51;3.2733;3.074;3.0457 +;-;+;-;-;-;-;-;-;- + 2188 + NaN NaN 252945.2 NaN 7738 2586 10325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10327 50.047 NaN 559790 35 0 73407 0.261 + 34353 YPEGFEIHSM 10 80 613.2633828160687 1224.5122126989372 2 613.2633666992188 MULTI HCD FTMS 0 0 0 10325 338606.90625 0.9964980913687489 -4 0.12169265747070312 2 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 155.02607137521346 8.105858163714844E-08 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 127.76 0 0 10.433 10.433 97.379 0 0 0 79.83232981810784 15.368931070804592 15.368931070804592 22.324185794871468 0 2.7658715643802765 1.5228787452803376 2.3723637474483468 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}GEE{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};[EP]YG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};[EP]GY{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E[HS]PY 10.433;8.6102;7.6149;7.2001;6.9937;6.5338;6.501;6.4858;6.4294;6.3457 +;-;+;-;-;-;-;-;-;- + 5444 + NaN NaN 166312.3 NaN 7739 2586 10325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10328 50.05 NaN 262590 35 0 23301 0.261 + 24398 RYKGPGFEYF 10 67 632.3116118557924 1262.6086707783847 2 632.3115234375 MULTI HCD FTMS 0 0 0 10325 159970.25 0.35775815286424334 5 -0.12475204467773438 3 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 57.2037768669896 0.05159098836169478 1 [YR]KG[PG]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 10 0 + 84.064 0 0 6.658 6.658 90.353 0 0 0 19.744237387763093 55.136576733812234 19.744237387763093 10.779550148593486 0 1.6747425010840047 1.3979400086720375 0.805462187404089 0.28872548999643577 + + [YR]KG[PG]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]KYE[NP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KG[PG][YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KG[PG]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]E;[YR]K[NP][YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KYE{[CT]|[{M(Oxidation (M))|F}G]}[PG]{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]E;[{M(Oxidation (M))|F}E][NP]YKRY{M(Oxidation (M))|F};[YR]KY[W{M(Oxidation (M))|F}][TA]E 6.658;5.8042;4.2132;4.1355;3.6719;3.2817;2.9875;2.8181;2.7856;2.6414 +;-;-;-;-;-;-;-;-;- + 733 NaN NaN 131158.9 NaN 7740 2586 10325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10329 50.053 NaN 374290 35 0 63897 0.261 -1 LPEFYFCLS 9 61 588.2784216063676 NaN 0 588.2919921875 PEAK HCD FTMS 0 0 0 10325 10266.130859375 0.5626434504186327 -1 0.03285980224609375 4 Carbamidomethyl (C) _LPEFYFC(Carbamidomethyl (C))LS_ ENST00000413074.1_1_1:222763317-222763545:+|nuORF 7.910154910731844 0.25691533546754686 1 T{I|L}NEKWE 7 -1 20.927 0 0 1.7817 0 0 63.968333444605214 207.1135653131469 271.0818987577521 0 0 0 0 0 0 0 0 0.6549471895720985 T{I|L}NEKWE 1.7817 - 193 + NaN NaN 136795.4 NaN 7741 2586 10325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10330 50.057 NaN 175400 35 0 32153 0.263 + 35085 YVACCVKL 8 41 449.7294244500662 897.4442959669324 2 449.729248046875 MULTI HCD FTMS 0 0 0 10325 39879.40625 0.8408283121602478 1 -0.019641876220703125 5 Unmodified _YVACCVKL_ ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF 10.183394434864962 0.5188676124868831 1 M{I|L} 2 7 21.454 0 0 2.3905 0 0 635.3127174530637 0 635.3127174530637 0 -2.9833247972062793 -2.9833247972062793 0 0 0.5 0 0 0 M{I|L} 2.3905 - 13 + NaN NaN 111364.8 NaN 7742 2586 10325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10332 50.062 NaN 749900 35 0 40713 0.327 + 1106 AYINRASLL 9 90 510.79525728647076 1019.5759616397415 2 510.7951354980469 MULTI HCD FTMS 0 0 0 10331 292362.8125 0.6906458324474745 2 -0.05593109130859375 1 Unmodified _AYINRASLL_ ENSG00000138663|ENST00000264389|COPS4;nc|ENSG00000138663|Q9BT78-2|COPS4 114.20165948288297 0.0022564706844261533 1 AY{I|L}NRAS{I|L}{I|L} 9 0 + 86.914 0 0 8.5245 8.5245 89.37 0 0 0 4.182629364803361 4.182629364803361 4.182629364803361 4.182629364803361 0 2.624803706770636 2 0.48020468848809383 0 + + AY{I|L}NRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NRAS{I|L}{I|L};AY{I|L}NRA{I|L}S{I|L};AY{I|L}NR{I|L}AS{I|L};AY{I|L}GGRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N[VG]AS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[QA]AAS{I|L}{I|L};AY{I|L}GGRA{I|L}S{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GGRAS{I|L}{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}NRAS{I|L}{I|L} 8.5245;8.1143;7.9089;7.6585;7.6214;7.2111;7.0484;7.0058;6.9853;6.8158 +;+;-;-;-;-;-;-;-;- + 2023 + NaN NaN 195081.5 NaN 7743 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10333 50.066 NaN 855240 35 0 351710 0.261 + 7190 FSLHPGQPAYF 11 54 421.8765733280575 1262.6078905843724 3 421.8766784667969 MULTI HCD FTMS 0 0 0 10331 283942.71875 0.36666032575754764 6 -0.15756988525390625 2 Unmodified _FSLHPGQPAYF_ REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF 9.243775137331637 0.3765410959215665 1 {M(Oxidation (M))|F}RY{M(Oxidation (M))|F} 4 -1 40.433 0 0 3.2023 0 0 631.3039417951187 0 631.3039417951187 0 30.8116097541118 0 0 0 1 0 0 0 {M(Oxidation (M))|F}RY{M(Oxidation (M))|F} 3.2023 - 60 NaN NaN 217996.7 NaN 7744 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10334 50.07 NaN 302820 35 0 38313 0.261 -1 ALPSMPPAL 9 40 456.74721436237445 NaN 0 456.760986328125 PEAK HCD FTMS 0 0 0 10331 6886.8388671875 1 0 0 3 Oxidation (M) _ALPSM(Oxidation (M))PPAL_ ENST00000485071.2_1_7:100173012-100174533:-|nuORF 14.581692164780916 0.22376707489839515 1 {I|L}AW 3 -1 10.802 0 0 1.1851 0 0 131.06646907523583 407.19684778385005 538.2633168590859 0 0 0 0 0 0 0 0 0 {I|L}AW 1.1851 - 49 + NaN NaN 119795.9 NaN 7745 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10335 50.073 NaN 551980 35 0 40905 0.261 + 10488 IPDSHEITL 9 95 512.7679433634271 NaN 0 512.7687377929688 PEAK HCD FTMS 0 0 0 10331 180712.796875 0.592930605044967 -5 0.14133453369140625 4 Unmodified _IPDSHEITL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;NIPBL-WDR70|1|fusion 52.268347100219714 0.03991945013439704 1 T{I|L}{M(Oxidation (M))|F}GEV 6 8 23.554 0 0 2.3013 0 0 131.08246840336113 243.0981386774047 374.18060708076587 0 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 T{I|L}{M(Oxidation (M))|F}GEV 2.3013 - 194 + NaN NaN 167471.6 NaN 7746 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10336 50.076 NaN 149060 35 0 30779 0.261 + -1 MFTRFNEEI 9 40 601.7790637740396 1201.5435746148792 2 601.7792358398438 MULTI HCD FTMS 0 0 0 10331 102546.109375 0.32214989216758083 22 -0.6054191589355469 5 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 24.020572477871973 0.15282392193088168 1 NVE{I|L} 4 -1 47.607 0 0 3.9622 0 0 728.2925282209 0 728.2925282209 0 41.15356566548286 0 0 0 0.3807196863200844 0 0 1.1861818737241734 NVE{I|L} 3.9622 - 54 NaN NaN 104653.4 NaN 7747 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10337 50.08 NaN 239380 35 0 15697 0.263 + 24672 RYLSPKYIKMF 11 55 482.60394014715575 1444.7899910416672 3 482.9385070800781 MULTI HCD FTMS 0 0 0 10331 106100.1484375 0.41818804443537366 10 -0.26950836181640625 6 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 39.41278653710922 0.14073190061031945 1 YD[KP]Y{I|L}KM{M(Oxidation (M))|F} 9 3 51.353 0 0 3.5544 0 0 241.17842299629064 0 241.17842299629064 0 39.67084689121528 0 0 0 2.548455006504028 0 1.3807196863200843 0 YD[KP]Y{I|L}KM{M(Oxidation (M))|F} 3.5544 - 169 NaN NaN 121664.1 NaN 7748 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10338 50.083 NaN 102330 35 0 24381 0.261 + 5054 FDSAFFTL 8 43 474.2288475077548 946.4431420823096 2 474.2287292480469 MULTI HCD FTMS 0 0 0 10331 58394.60546875 0.8585610239175764 4 -0.10511016845703125 7 Unmodified _FDSAFFTL_ REV__ENSG00000277481|ENST00000620267|PKD1L3 13.50788311687929 0.4944073034352369 1 {I|L}{I|L} 2 -1 24.464 0 0 2.5848 0 0 702.2638416974625 0 702.2638416974625 0 24.463950151760656 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.5848 - 12 NaN NaN 97843.5 NaN 7749 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10339 50.086 NaN 134310 35 0 11023 0.261 + 30067 VFTKSPYQEF 10 48 623.3111409777752 1244.6077290223502 2 623.3106079101562 MULTI HCD FTMS 0 0 0 10331 50364.34765625 0.2708387896961687 -5 0.14133453369140625 8 Unmodified _VFTKSPYQEF_ ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF 45.602519287354625 0.09678874836934029 1 C(Carbamidomethyl (C))SKTEV 6 8 48.955 0 0 3.9334 0 0 522.2486439435562 0 522.2486439435562 0 20.76733193413073 0 0 0 1.1549471895720984 0 0.3494850021680094 0 C(Carbamidomethyl (C))SKTEV 3.9334 - 89 NaN NaN 116151.7 NaN 7750 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10340 50.09 NaN 96277 35 0 11191 0.261 -1 SYMLVNENRF 10 44 644.8032588578159 1287.5919647824317 2 644.8033447265625 MULTI HCD FTMS 0 0 0 10331 34874.41796875 0.2713707582793323 -13 0.3682060241699219 9 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 28.233623360808718 0.24751404419789966 1 ENV{I|L}[EC]{M(Oxidation (M))|F} 7 -1 43.505 0 0 3.3788 0 0 435.2240162580094 0 435.2240162580094 0 38.02001655294582 0 0 0 1.6549471895720984 0 0 0 ENV{I|L}[EC]{M(Oxidation (M))|F} 3.3788 - 69 NaN NaN 100089.7 NaN 7751 2587 10331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10342 50.095 NaN 666120 35 0 151240 0.327 + 3532 EILRAEELLF 10 68 411.5677977526689 1231.6815638582068 3 411.56787109375 MULTI HCD FTMS 0 0 0 10341 169610.890625 0.09507127750972967 17 -0.4639892578125 1 Unmodified _EILRAEELLF_ REV__ENSG00000179104|ENST00000321196|TMTC2 7.477065608646677 0.43572640772348226 1 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 5 -1 37.263 0 0 3.0254 0 0 547.2760155626488 0 547.2760155626488 0 17.798859261803983 0 0 0 1.5 0 0 0.3054621874040891 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 3.0254 - 23 NaN NaN 188429 NaN 7752 2588 10341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10343 50.099 NaN 612600 35 0 88833 0.261 + 26350 SSIDSEPAL 9 63 459.724343096957 917.434133260714 2 459.724365234375 MULTI HCD FTMS 0 0 0 10341 337989.71875 0.563043415112116 -4 0.10837936401367188 2 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 141.82661023413823 1.746659319327287E-05 1 {[CA]|SS}{I|L}DSEPA{I|L} 9 0 + 88.297 0 0 9.6244 9.6244 98.669 0 0 0 6.879617791072832 68.62646547550668 6.879617791072832 60.88363903852911 0 2.885151878060192 0 1.863364334130467 0 + + {[CA]|SS}{I|L}DSEPA{I|L};[PA]TDSE[VS]{I|L};[PA]TD{NN|[MP]|[D{I|L}]|[EV]}{[CA]|SS}{I|L} 9.6244;2.9881;0.91786 +;-;- + 149 NaN NaN 184691.5 NaN 7753 2588 10341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10344 50.103 NaN 707380 35 0 49187 0.261 + 20290 NYNEKIYEL 9 93 593.2933266850304 1184.5721004368606 2 593.2930297851562 MULTI HCD FTMS 0 0 0 10341 286437.6875 0.32048595513003764 -4 0.10837936401367188 3 Unmodified _NYNEKIYEL_ ENSG00000070010|ENST00000263202|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-1|UFD1;nc|ENSG00000070010|Q92890-3|UFD1 121.34585337138759 0.001129813327125052 1 [YN]NEK{I|L}YE{I|L} 9 0 + 98.572 0 0 8.3213 8.3213 88.622 0 0 0 8.997972112521921 8.997972112521921 8.997972112521921 3.2082530717588753 0 2.6307196863200843 2 0 1.622363747448347 + + [YN]NEK{I|L}YE{I|L};[YN]NEK{I|L}EY{I|L};[YN]GGEK{I|L}YE{I|L};[YN]GGEK{I|L}EY{I|L};[YN]NEK[YE]{I|L}{I|L};[YN]NV{[SA]|[TG]}{I|L}YE{I|L};[YN]GGEK[YE]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YN]K{I|L}YE{I|L};[YN]GGV{[SA]|[TG]}{I|L}YE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YN]K{I|L}EY{I|L} 8.3213;8.0505;7.544;7.2731;5.6853;5.4831;4.908;4.6252;4.4144;4.3544 +;-;-;-;-;-;-;-;-;- + 1560 NaN NaN 193565.9 NaN 7754 2588 10341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10345 50.106 NaN 345550 35 0 25260 0.261 -1 YYVAGFSILC 10 76 596.7894210916821 1191.5642892501642 2 597.77880859375 MULTI HCD FTMS 0 0 0 10341 11892.033203125 0.4603590677955722 4 -0.1016845703125 4 Carbamidomethyl (C) _YYVAGFSILC(Carbamidomethyl (C))_ ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9 11.640296217721598 0.4022326134240651 1 YY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EQKT 9 -1 44.415 0 0 3.7275 0 0 0 59.00710609883495 59.00710609883495 9.328986159752972 0 0 0 0 0 2 0.7302046884880937 0 YY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EQKT 3.7275 - 675 NaN NaN 144366.5 NaN 7755 2588 10341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10346 50.109 NaN 328970 35 0 28268 0.262 + 26222 SPTKLDVTL 9 57 487.2818933244966 972.5492337157932 2 487.2819519042969 MULTI HCD FTMS 0 0 0 10341 186774.390625 0.764513123675252 -2 0.052585601806640625 5 Unmodified _SPTKLDVTL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 55.23464941255904 0.024247875903973527 1 [PS]TK{I|L}DVT{I|L} 9 0 + 65.812 0 0 6.767 6.767 87.85 0 0 0 7.629558869816009 14.777201585008513 7.629558869816009 7.629558869816009 0 1.0924778212679485 1.3979400086720375 0.805462187404089 0 + + [PS]TK{I|L}DVT{I|L};{[QN]|[E{I|L}]|[KN]}K[VG]DVT{I|L};[KT]PS{I|L}DVT{I|L};[{I|L}T][QA]{I|L}DVT{I|L};[VG]{[VA]|[{I|L}G]}S{I|L}DVT{I|L};[{I|L}T][VG][VG]DVT{I|L};{[TV]|[{I|L}S]}{[NV]|[RG]}{I|L}DVT{I|L};[VG][{I|L}T][VG]DVT{I|L};{[TV]|[{I|L}S]}{[VA]|[{I|L}G]}[VG]DVT{I|L};{[QN]|[E{I|L}]|[KN]}KR{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PA] 6.767;5.9825;5.6201;5.4987;5.0825;4.8076;4.3112;3.7197;3.6201;1.4867 +;-;-;-;-;-;-;-;-;- + 246 NaN NaN 132178.6 NaN 7756 2588 10341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10347 50.113 NaN 175930 35 0 19993 0.261 -1 FPDKEVML 8 45 497.7493901552482 993.4842273772964 2 497.7499694824219 MULTI HCD FTMS 0 0 0 10341 73598.6796875 0.630069672878635 14 -0.3780517578125 6 Oxidation (M) _FPDKEVM(Oxidation (M))L_ ENSG00000104823|ENST00000221418|ECH1;ENST00000601333.1_1_19:39306255-39306727:-|nuORF 22.736283301280096 0.42650828432173493 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WWVM 6 -1 29.882 0 0 3.0078 0 0 0 144.04668601020936 144.04668601020936 25.27819381628923 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WWVM 3.0078 - 43 NaN NaN 114409.2 NaN 7757 2588 10341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10349 50.118 NaN 6677700 35 0 904710 0.327 + 24843 RYPTSIASL 9 86 504.2796071581441 1006.5446613830882 2 504.2797546386719 MULTI HCD FTMS 0 0 0 10348 4654094.5 1 0 0 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 96.36657018975838 0.004359138328518304 1 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 79.777 0 0 7.9258 0 0 0 128.07158357697077 128.07158357697077 60.07876723669439 0 0 0 0 1.3494850021680094 1.6989700043360187 2.2179001828205482 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 7.9258 - 1571 NaN NaN 780804.4 NaN 7758 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10350 50.122 NaN 2305000 35 0 399850 0.261 -1 0 78 500.2536832441926 998.4928135551852 2 500.25384521484375 MULTI HCD FTMS 0 0 0 10348 1673447 0.8754975348222058 2 -0.0491790771484375 2 NaN NaN 1 STQEPE{I|L} 7 -1 78.127 0 0 7.8245 0 0 196.12146193672032 0 196.12146193672032 0 32.27584469741785 0 0 0 1.8494850021680094 0 1.697621246364342 0.7742275032520141 STQEPE{I|L} 7.8245 - 1449 NaN NaN 444346.7 NaN 7759 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10351 50.126 NaN 435630 35 0 75386 0.261 + 23708 RQPSLFYHL 9 69 580.8141060741433 1159.6136592150865 2 580.8142700195312 MULTI HCD FTMS 0 0 0 10348 251951.15625 0.9310814209781992 1 -0.02625274658203125 3 Unmodified _RQPSLFYHL_ ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant 43.77239144664712 0.04802738721622131 1 YH{I|L} 3 6 36.198 0 0 3.1215 0 0 728.3973810466531 0 728.3973810466531 0 14.943415770716157 0 0 0 1 0 0 0 + YH{I|L} 3.1215 + + 163 NaN NaN 149008.3 NaN 7760 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10352 50.129 NaN 348940 35 0 26157 0.261 + 6777 FPQYPDKEL 9 75 568.784702871986 1135.554852810772 2 568.7847900390625 MULTI HCD FTMS 0 0 0 10348 178401.828125 0.8148235768316037 1 -0.02625274658203125 4 Unmodified _FPQYPDKEL_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 78.06048673739656 0.006479972202176041 1 {M(Oxidation (M))|F}PQY[DP]KE{I|L} 9 0 + 67.017 0 0 5.9017 5.9017 84.024 0 0 0 45.2512186568557 1.4786271147499264 1.4786271147499264 2.3721186938815464 0 2.4291746928241125 0 1.305462187404089 0.3807196863200844 + + {M(Oxidation (M))|F}PQY[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]K{I|L}E;{M(Oxidation (M))|F}P[AG]Y[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}[DP]K{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]Y[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]Y[DP]K{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]PD{M(Oxidation (M))|F}KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]PD{M(Oxidation (M))|F}K{I|L}E 5.9017;5.6928;5.6226;5.0908;4.9718;4.9016;4.8819;4.8117;4.5579;4.4877 +;+;-;-;-;-;-;-;-;- + 791 + NaN NaN 138124.7 NaN 7761 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10353 50.132 NaN 333240 35 0 17992 0.261 + 34249 YPDRIMNTF 9 68 586.7737018509798 1171.5328507687595 2 586.774169921875 MULTI HCD FTMS 0 0 0 10348 174795.75 0.043654886990596053 66 -1.8879165649414062 5 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 97.74103586103693 0.004323122048066454 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 65.249 0 0 5.5696 5.5696 86.323 0 0 0 4.137342758552691 27.290325063701744 4.137342758552691 9.076447055154517 0 1.8851518780601921 0 0.2614393726401688 0.7742275032520141 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}[QA]Y;YP{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}[DV]T{M(Oxidation (M))|F};[EP][PG]{M(Oxidation (M))|F}{I|L}[HQ]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPY[QA]Y 5.5696;4.7948;4.7836;4.6408;4.0088;3.8548;2.4241;2.1161;1.6038;1.4954 +;+;-;-;-;-;-;-;-;- + 905 NaN NaN 146914.4 NaN 7762 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10354 50.136 NaN 257580 35 0 37552 0.261 + 24787 RYPDRITLI 9 63 573.8350666957131 1145.655580458226 2 573.8351440429688 MULTI HCD FTMS 0 0 0 10348 126590.6796875 0.05376644687942645 15 -0.404296875 6 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 27.628801355627647 0.12213550946336599 1 RY 2 7 35.217 0 0 3.0739 0 0 0 823.4679820822139 823.4679820822139 14.247425010840047 0 0 0 0 0.4247425010840047 1.3010299956639813 0 0 + RY 3.0739 + + 55 + NaN NaN 122764.2 NaN 7763 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10355 50.139 NaN 476790 35 0 50352 0.261 + 19701 NYADQISRL 9 81 540.2766169906967 1078.5386810481932 2 540.2783813476562 MULTI HCD FTMS 0 0 0 10348 114679.828125 0.8222540814090479 1 -0.02625274658203125 7 Unmodified _NYADQISRL_ ENSG00000008294|ENST00000262013|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-2|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3 85.76441949171179 0.004636955403846499 1 [YN]ADQ{I|L}SR{I|L} 9 0 + 101.95 0 0 9.4528 9.4528 93.385 0 0 0 19.750547101681875 16.478174818886373 16.478174818886373 9.208187539523749 0 2.805462187404089 2 0 2.086696871556164 + + [YN]ADQ{I|L}SR{I|L};[YN]ADQ{I|L}S[VG]{I|L};[YN]AD[AG]{I|L}SR{I|L};[YN]AD[AG]{I|L}S[VG]{I|L};[YN]ADQTVR{I|L};[YN]AK{I|L}EDN{I|L};[YN][WQ]{I|L}S[VG]{I|L};[YN]AD[AG]TVR{I|L};[YN]AK{I|L}EDGG{I|L};[YN]AK{[HG]|PP}YN{I|L} 9.4528;8.599;8.599;7.7493;6.4442;6.342;6.1426;5.5904;5.4882;4.9984 +;-;-;-;-;-;-;-;-;- + 836 NaN NaN 164637.5 NaN 7764 2589 10348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10357 50.144 NaN 1294600 35 0 204380 0.327 + -1 CAKCNTVDL 9 95 512.2324379659809 1022.4503229987619 2 512.7509155273438 MULTI HCD FTMS 0 0 0 10356 21818.537109375 0.7840377778061636 2 -0.0524444580078125 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))AKCNTVDL_ REV__ENSG00000042781|ENST00000307340|USH2A;REV__nc|ENSG00000042781|O75445-2|USH2A;REV__nc|ENSG00000042781|O75445-3|USH2A;REV__USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant 19.256988751693697 0.19398022840297344 1 DVE{[CT]|[{M(Oxidation (M))|F}G]}VD{I|L} 8 -1 42.897 0 0 4.1956 0 0 130.058224411322 0 130.058224411322 0 26.880142566401496 0 0 0 0.12371250542002349 0 1.6254223615525998 0 DVE{[CT]|[{M(Oxidation (M))|F}G]}VD{I|L} 4.1956 - 541 + NaN NaN 300741.3 NaN 7765 2590 10356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10358 50.148 NaN 371320 35 0 55083 0.261 + 15248 LPAAGVGDMVM 11 81 546.7568773865822 1091.4992018399644 2 546.7572021484375 MULTI HCD FTMS 0 0 0 10356 148138.515625 0.17115430955032623 20 -0.5527496337890625 2 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 128.3654064809346 0.010414414809120197 1 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 3 76.253 0 0 6.9861 0 0 281.17627811125186 0 281.17627811125186 0 57.67347258877354 0 0 0 3.0114393726401687 0 0.6989700043360187 0 + AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.9861 + + 692 + NaN NaN 141163.8 NaN 7766 2590 10356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10359 50.152 NaN 364740 35 0 30512 0.261 + 22706 QYAPSTAQF 9 75 506.7399099435536 1011.4652669539072 2 506.739990234375 MULTI HCD FTMS 0 0 0 10356 101807.2890625 0.8233964351908281 -3 0.082183837890625 3 Unmodified _QYAPSTAQF_ ENSG00000122515|ENST00000309315|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 59.368380827593164 0.01846506874148156 1 [QA]Y[PS]TAQ{M(Oxidation (M))|F} 9 2 + 61.137 0 0 6.0444 6.0444 83.344 0 0 0 0.5102999566398125 14.422262144776354 0.5102999566398125 0.5102999566398125 0 2.1989700043360187 0 0.805462187404089 0 [QA]Y[PS]TAQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[PS]TAQ{M(Oxidation (M))|F};[YQ]A[PS]TAQ{M(Oxidation (M))|F};[QA]Y[PS]TA[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[PS]TA[AG]{M(Oxidation (M))|F};[YQ]A[PS]TA[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[NG]TAQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[NG]TA[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WWAQ{M(Oxidation (M))|F};[C(Carbamidomethyl (C))M][K{I|L}]WQ{M(Oxidation (M))|F} 6.0444;5.9939;5.9209;5.134;5.0835;5.0105;4.6066;3.6962;3.2084;2.627 -;-;+;-;-;-;-;-;-;- + 552 NaN NaN 138952.5 NaN 7767 2590 10356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10360 50.155 NaN 281020 35 0 27325 0.262 + 26172 SPNVSAEK 8 67 416.21272278103834 NaN 0 416.22021484375 PEAK HCD FTMS 0 0 0 10356 6354.41748046875 0.4790297777156438 1 -0.02292633056640625 4 Unmodified _SPNVSAEK_ REV__ENSG00000254656|ENST00000649591|RTL1 4.3292370932331545 0.38822285293237185 1 {M(Oxidation (M))|F}KEV 4 -1 10.266 0 0 1.2362 0 0 53.039937658026425 271.0728853815063 324.1128230395327 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}KEV 1.2362 - 29 + NaN NaN 128205.2 NaN 7768 2590 10356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10361 50.159 NaN 157040 35 0 16085 0.261 + 26333 SSDIYNEL 8 51 470.7156904927949 939.4168280523899 2 470.7160339355469 MULTI HCD FTMS 0 0 0 10356 68370.6328125 0.7871270070794688 -2 0.0492401123046875 5 Unmodified _SSDIYNEL_ ENSG00000134900|ENST00000376052|TPP2;ENST00000466153.5_1_13:103307300-103330663:+|nuORF;ENST00000482393.1_1_13:103309549-103320211:+|nuORF;nc|ENSG00000134900|P29144|TPP2 13.90604991867851 0.4914777452512057 1 {[CA]|SS}{I|L}D 4 5 22.435 0 0 2.3882 0 0 0 534.2177218072874 534.2177218072874 22.43501263708417 0 0 0 0 0.7742275032520141 0 0 0 {[CA]|SS}{I|L}D 2.3882 - 9 + NaN NaN 112129.4 NaN 7769 2590 10356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10362 50.162 NaN 151260 35 0 9740.1 0.261 -1 YPESESIMM 9 53 551.7251129443138 1101.4356729554274 2 551.7251586914062 MULTI HCD FTMS 0 0 0 10356 12775.4521484375 0.23204451983795488 7 -0.18732452392578125 6 Oxidation (M) _YPESESIMM(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 20.453626601364224 0.18364154288633264 1 S{I|L}M{M(Oxidation (M))|F} 4 -1 35.477 0 0 3.221 0 0 605.2363148419937 0 605.2363148419937 0 19.992822134202015 0 0 0 1.305462187404089 0 0 0 S{I|L}M{M(Oxidation (M))|F} 3.221 + + 27 NaN NaN 109573.6 NaN 7770 2590 10356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10364 50.167 NaN 548370 35 0 63906 0.326 + 9880 IAKQYQDAI 9 53 525.2849507729431 1048.5553486126862 2 525.2848510742188 MULTI HCD FTMS 0 0 0 10363 312222.125 0.8268518454916869 -2 0.0491790771484375 1 Unmodified _IAKQYQDAI_ ENSG00000154222|ENST00000284376|CC2D1B;ENST00000460261.5_1_1:52822810-52825784:-|nuORF;ENST00000491136.6_1_1:52823963-52826194:-|nuORF;nc|ENSG00000154222|Q5T0F9-3|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B 36.04419817259434 0.08350412372117409 1 Q{[WS]|[C(Carbamidomethyl (C)){I|L}]}A{I|L} 5 6 29.526 0 0 2.8158 0 0 445.23494155097814 0 445.23494155097814 0 6.9525559917570945 0 0 0 0.5 0 0.9247425010840047 0.9247425010840047 Q{[WS]|[C(Carbamidomethyl (C)){I|L}]}A{I|L} 2.8158 - 105 NaN NaN 170971.9 NaN 7771 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10365 50.171 NaN 522190 35 0 86909 0.261 + 31769 VYLPTHTSL 9 73 515.7817873575486 1029.5490217818972 2 515.78173828125 MULTI HCD FTMS 0 0 0 10363 131939.921875 0.6474603825006724 -2 0.0491790771484375 2 Unmodified _VYLPTHTSL_ ENSG00000007944|ENST00000356840|MYLIP 36.04419817259434 0.08350412372117409 1 VY{I|L} 3 6 48.416 0 0 4.7027 0 0 0 651.3108033058119 651.3108033058119 39.83288122256525 0 0 0 0 1 1.6989700043360187 0 0 + VY{I|L} 4.7027 + + 68 + NaN NaN 164972.6 NaN 7772 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10366 50.175 NaN 316860 35 0 40324 0.261 + 11097 IYHTGTFAQI 10 64 575.7982265059592 1149.5819000787183 2 575.7982177734375 MULTI HCD FTMS 0 0 0 10363 152621.453125 0.8663171812746973 -1 0.02292633056640625 3 Unmodified _IYHTGTFAQI_ ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF;nc|ENSG00000196365|P36776-2|LONP1 66.45667989310934 0.021783857413937163 1 {[QN]|[E{I|L}]|[KN]}HHR{M(Oxidation (M))|F}AQ{I|L} 9 4 + 59.345 0 0 5.1623 5.1623 86.523 0 0 0 13.64393726401687 40.149087242336776 13.64393726401687 9.208187539523749 0 1.3494850021680094 0 1.1747425010840047 0 {[QN]|[E{I|L}]|[KN]}HHR{M(Oxidation (M))|F}AQ{I|L};{[QN]|[E{I|L}]|[KN]}HHR{M(Oxidation (M))|F}A[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]{M(Oxidation (M))|F}AQ{I|L};[QA]{[WT]|[RM]}[VS]{M(Oxidation (M))|F}AQ{I|L};[QA]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TP]{M(Oxidation (M))|F}AQ{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{I|L}Q{I|L};{[QN]|[E{I|L}]|[KN]}HHRM[KS]{I|L};[QA]{[WT]|[RM]}[YQ]{I|L}Q{I|L};{[QN]|[E{I|L}]|[KN]}HHREA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]Q{I|L}{I|L} 5.1623;4.3613;4.0994;3.6213;3.2063;2.2031;1.8125;1.7249;1.0969;1.027 -;-;-;-;-;-;-;-;-;- 314 NaN NaN 137676.5 NaN 7773 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10367 50.178 NaN 173740 35 0 13484 0.261 + 12907 KYGIVLKEF 9 65 548.8238621810726 1095.6331714289452 2 548.8239135742188 MULTI HCD FTMS 0 0 0 10363 71707.1015625 0.7461971906558984 1 -0.02951812744140625 4 Unmodified _KYGIVLKEF_ ENSG00000125651|ENST00000394456|GTF2F1 40.23920728925047 0.06424668180817725 1 KY{[VA]|[{I|L}G]}V{I|L}KE{M(Oxidation (M))|F} 9 0 + 50.116 0 0 4.5742 4.5742 86.79 0 0 0 23.394484365698744 8.261518613495511 8.261518613495511 11.008337601396853 0 2.079689690656103 0 0.4247425010840047 0 + + KY{[VA]|[{I|L}G]}V{I|L}KE{M(Oxidation (M))|F};[YK]{[VA]|[{I|L}G]}V{I|L}K{M(Oxidation (M))|F}E;[{M(Oxidation (M))|F}V][KS]V{I|L}K{M(Oxidation (M))|F}E 4.5742;3.5694;2.9793 +;-;- + 86 + NaN NaN 113970.2 NaN 7774 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10368 50.182 NaN 233720 35 0 18537 0.261 + -1 TRFKYMTF 8 65 555.2760509021377 NaN 0 555.2579345703125 PEAK HCD FTMS 0 0 0 10363 5357.57861328125 0.29796000044752435 -1 0.02292633056640625 5 Oxidation (M) _TRFKYM(Oxidation (M))TF_ REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 9.347437153973935 0.38822285293237185 1 TS 2 -1 12.831 0 0 1.1575 0 0 64.0412688004081 853.367014249792 917.4082830502001 0 0 0 0 0 0 0 0.4247425010840047 0 TS 1.1575 - 254 + NaN NaN 105155.9 NaN 7775 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10369 50.185 NaN 158310 35 0 16354 0.261 + 34587 YPNKYESII 9 48 563.7928176483014 1125.5710823634026 2 563.792724609375 MULTI HCD FTMS 0 0 0 10363 53393.6875 0.35631241039913775 -3 0.07216644287109375 6 Unmodified _YPNKYESII_ AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1 31.26834338654808 0.10542797264966089 1 YP 2 7 36.427 0 0 3.2363 0 0 0 862.4347435670624 862.4347435670624 2.1741655787624836 0 0 0 0 0.5 1.5228787452803376 0 0 + YP 3.2363 + + 25 + NaN NaN 106032.8 NaN 7776 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10370 50.188 NaN 220150 35 0 14786 0.261 -1 0 56 533.2731084310496 532.2658319644496 1 533.2899780273438 MULTI HCD FTMS 0 0 0 10363 5466.94580078125 0.17660487914630807 -9 0.2464447021484375 7 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 25.062 0 0 4.7085 0 0 0 208.10934327720273 208.10934327720273 16.10924374808178 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 4.7085 - 22 NaN NaN 117915.9 NaN 7777 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10371 50.191 NaN 79211 35 0 6874.9 0.261 + 12972 KYIHFTPNF 9 49 583.8046369512879 NaN 0 583.8071899414062 PEAK HCD FTMS 0 0 0 10363 16899.57421875 0.07480807468933394 17 -0.4706840515136719 8 Unmodified _KYIHFTPNF_ ENSG00000137975|ENST00000370565|CLCA2 5.731851221503515 0.26747109115447115 1 T 1 8 10.485 0 0 0.8995 0 0 688.3723831781632 373.1522310846313 1061.5246142627946 0 0 0 0 0 0.5 0 0 0 + T 0.8995 + + 8 + NaN NaN 100772.9 NaN 7778 2591 10363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10373 50.196 NaN 860100 35 0 209780 0.327 + 16123 LPTEQEVRF 9 80 559.7955710174537 1117.5765891017072 2 560.2789306640625 MULTI HCD FTMS 0 0 0 10372 15365.810546875 0.08143294036106966 8 -0.22710800170898438 1 Unmodified _LPTEQEVRF_ ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 23.789781309258295 0.1548179064208189 1 {I|L}QEY{I|L}{M(Oxidation (M))|F} 6 5 34.294 0 0 3.0686 0 0 306.19432109242604 0 306.19432109242604 0 -3.31781054871756 -3.31781054871756 0 0 0 0 0.3807196863200844 0.28872548999643577 {I|L}QEY{I|L}{M(Oxidation (M))|F} 3.0686 - 562 + NaN NaN 215521.6 NaN 7779 2592 10372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10374 50.201 NaN 530370 35 0 67676 0.261 + 34354 YPEGFEIHSM 10 79 613.2633828160687 1224.5122126989372 2 613.263427734375 MULTI HCD FTMS 0 0 0 10372 296195.59375 0.8716843584571995 2 -0.055938720703125 2 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 183.0388951392065 3.507095545893476E-16 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 126.86 0 0 10.36 10.36 97.396 0 0 0 90.95483957839335 15.368931070804592 15.368931070804592 22.825834421237516 0 2.7034021960761265 1.5228787452803376 2.646591250700361 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}GEE{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE]GHS{M(Oxidation (M))|F};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]} 10.36;8.4964;7.6708;7.1272;6.6005;6.3979;6.3005;6.1045;6.0671;5.7797 +;-;+;-;-;-;-;-;-;- + 5444 + NaN NaN 164853.4 NaN 7780 2592 10372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10375 50.204 NaN 130060 35 0 14629 0.261 + 24399 RYKGPGFEYF 10 61 632.3116118557924 1262.6086707783847 2 632.3115844726562 MULTI HCD FTMS 0 0 0 10372 71047.5546875 0.1588910558714593 11 -0.31261444091796875 3 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 46.4752305370441 0.09060834033530853 1 [YR]KG[PG]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 10 0 + 50.992 0 0 4.0386 4.0386 82.484 0 0 0 8.177418734074564 36.78334379460914 8.177418734074564 5.568109453757657 0 1.305462187404089 0 0.3807196863200844 0.3494850021680094 + + [YR]KG[PG]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]KG[PG]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]E;[YR]K[NP]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]E;[VG]{[CA]|SS}Y{[RE]|[WV]}RY{M(Oxidation (M))|F} 4.0386;3.5976;1.6176;1.1766;0.41377 +;-;-;-;- + 218 NaN NaN 103014.9 NaN 7781 2592 10372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10376 50.208 NaN 226020 35 0 34940 0.263 + 4223 EVCVFFVF 8 64 495.2455177949714 988.4764826567429 2 495.24578857421875 MULTI HCD FTMS 0 0 0 10372 72919.734375 0.8226267240612689 -3 0.07869720458984375 4 Unmodified _EVCVFFVF_ REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF 19.438996006549623 0.45076845602799126 1 V{M(Oxidation (M))|F} 2 -1 27.391 0 0 2.771 0 0 724.329248625296 0 724.329248625296 0 -0.718421963928435 -0.718421963928435 0 0 0.8807196863200843 0 0 0 V{M(Oxidation (M))|F} 2.771 + + 144 + NaN NaN 118576.5 NaN 7782 2592 10372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10377 50.211 NaN 50848 35 0 8442.3 0.261 + 2325 DMSEKVFVWN 10 32 627.7945836592324 NaN 0 627.7940063476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _DMSEKVFVWN_ REV__nc|ENSG00000174678|A6NHR8|FAM47DP 2.498486711656943 0.3380459306859131 1 {M(Oxidation (M))|F}V 2 -1 7.9588 0 0 0.63489 0 0 417.19620969952103 587.2245577447874 1004.4207674443085 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 0.63489 + + 4 + NaN NaN 102440.4 NaN 7783 2592 10372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10378 50.214 NaN 52857 35 0 5546.6 0.261 + 10872 IVSALWEKW 9 44 566.312255859375 NaN 0 566.312255859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _IVSALWEKW_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92902.8 NaN 7784 2592 10372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10380 50.219 NaN 330860 35 0 28777 0.327 + 30068 VFTKSPYQEF 10 64 623.3111409777752 1244.6077290223502 2 623.31103515625 MULTI HCD FTMS 0 0 0 10379 151034 0.8121988602366996 1 -0.03299713134765625 1 Unmodified _VFTKSPYQEF_ ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF 116.74517065009209 4.286409334324374E-05 1 [{M(Oxidation (M))|F}V]TKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE{M(Oxidation (M))|F} 10 0 + 78.439 0 0 6.3023 6.3023 87.776 0 0 0 5.764837301042718 62.24067050357411 5.764837301042718 9.164539485499262 0 2.6861818737241734 0 2.094187677400525 0 + + [{M(Oxidation (M))|F}V]TKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]E{M(Oxidation (M))|F};[KT][{M(Oxidation (M))|F}V]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]Q{[CP]|[EA]}[KT]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]Q{[CP]|[EA]}[KT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]Q{[CP]|[EA]}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 6.3023;5.5659;2.967;1.457;1.2151;0.71299 +;-;-;-;-;- + 366 NaN NaN 135628.1 NaN 7785 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10381 50.224 NaN 450830 35 0 174970 0.264 + 24404 RYKGPGFEYF 10 52 421.8765733280575 1262.6078905843724 3 421.87689208984375 MULTI HCD FTMS 0 0 0 10379 138956.5625 0.1794371015981512 12 -0.33936309814453125 2 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 11.517880264261096 0.4033776509493788 1 RY{M(Oxidation (M))|F} 3 7 36.198 0 0 2.8669 0 0 778.3672962873062 0 778.3672962873062 0 35.228787452803374 0 0 0 1 0 0 0 RY{M(Oxidation (M))|F} 2.8669 - 15 NaN NaN 153054.8 NaN 7786 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10382 50.227 NaN 128360 35 0 25520 0.261 + -1 MFTRFNEEI 9 49 601.7790637740396 1201.5435746148792 2 601.7789306640625 MULTI HCD FTMS 0 0 0 10379 94656.0234375 0.29736308797334743 28 -0.8031539916992188 3 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 13.042465956692817 0.2476723265019929 1 NVE{I|L} 4 -1 43.175 0 0 3.5933 0 0 728.2936878888687 0 728.2936878888687 0 43.17532531436136 0 0 0 0.4247425010840047 0 0 0.8494850021680094 NVE{I|L} 3.5933 - 30 NaN NaN 121687.8 NaN 7787 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10383 50.231 NaN 111350 35 0 12002 0.263 + 15570 LPDRDLAL 8 40 456.76121498169226 911.5078770301845 2 456.7610168457031 MULTI HCD FTMS 0 0 0 10379 67529.125 0.15613091797970205 11 -0.3026580810546875 4 Unmodified _LPDRDLAL_ ENSG00000077463|ENST00000337491|SIRT6;ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF 16.149105407346934 0.47497420569348414 1 {I|L}A{I|L} 3 5 30.005 0 0 3.2918 0 0 596.2890492169937 0 596.2890492169937 0 16.510234424404686 0 0 0 0.3807196863200844 0 0 0 + {I|L}A{I|L} 3.2918 + + 10 NaN NaN 99709 NaN 7788 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10384 50.234 NaN 145100 35 0 8792.6 0.261 + 24673 RYLSPKYIKMF 11 51 482.60394014715575 1444.7899910416672 3 482.9383850097656 MULTI HCD FTMS 0 0 0 10379 61964.3984375 0.2442293530103474 16 -0.4478492736816406 5 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 39.41278653710922 0.14073190061031945 1 S[KP]Y{I|L}KM{M(Oxidation (M))|F} 8 3 52.484 0 0 3.6327 0 0 432.24666224906707 0 432.24666224906707 0 46.99986893552975 0 0 0 2.004432191740108 0 1.305462187404089 0 + S[KP]Y{I|L}KM{M(Oxidation (M))|F} 3.6327 + + 42 NaN NaN 107132.9 NaN 7789 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10385 50.237 NaN 94233 35 0 20946 0.261 + 14262 LCLAMECSS 9 41 478.69782617309704 955.3810994129941 2 478.6980285644531 MULTI HCD FTMS 0 0 0 10379 45350.23828125 0.938687143418847 -2 0.052459716796875 6 Unmodified _LCLAMECSS_ ENST00000304056.8_1_7:32909542-32909605:-|nuORF 7.910154910731844 0.2910521888787154 1 {I|L}{[CA]|SS}D 4 6 20.445 0 0 2.14 0 0 0 550.1856173150999 550.1856173150999 19.186252728754987 0 0 0 0 0 0 0.4247425010840047 0 {I|L}{[CA]|SS}D 2.14 - 14 + NaN NaN 95757.6 NaN 7790 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10386 50.241 NaN 66870 35 0 7238.5 0.261 + -1 CWMSEMWIM 9 31 616.7356818428615 1231.4568107525229 2 617.236572265625 MULTI HCD FTMS 0 0 0 10379 21843.712890625 0.8913385243157945 -3 0.07538604736328125 7 Oxidation (M) _CWMSEMWIM(Oxidation (M))_ REV__ENST00000389600.6_1_13:51590304-51594849:-|nuORF;REV__nc|ENSG00000293412|O75343|GUCY1B2 4.3292370932331545 0.3181982124262546 1 YQ{I|L}{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.8116 0 0 662.2005193673809 0 662.2005193673809 0 39.94850021680094 0 0 0 1.5 0 0 0 YQ{I|L}{M(Oxidation (M))|F} 3.8116 - 23 NaN NaN 101640.1 NaN 7791 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10387 50.244 NaN 47024 35 0 4272.6 0.264 + 31067 VTAIQEEN 8 36 452.2233148757738 NaN 0 452.16864013671875 PEAK HCD FTMS 0 0 0 10379 4873.857421875 1 0 0 8 Unmodified _VTAIQEEN_ REV__ENSG00000101349|ENST00000353224|PAK5;REV__ENSG00000137843|ENST00000560346|PAK6;REV__nc|ENSG00000137843|Q9NQU5-2|PAK6 3.944395688203298 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.44096 0 0 243.08888941776007 509.27552210025624 752.3644115180164 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.44096 - 6 + NaN NaN 92977.9 NaN 7792 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10388 50.247 NaN 57551 35 0 6446.4 0.261 -1 HFIAEHYMF 9 36 605.7709674453793 NaN 0 605.770751953125 PEAK HCD FTMS 0 0 0 10379 20393.103515625 0.7219700167166914 5 -0.14821243286132812 9 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 7.289230182591677 0.2599242500475609 1 {I|L} 1 -1 10.485 0 0 0.86683 0 0 284.12688254525216 809.2954805963499 1093.422363141602 0 0 0 0 0 0.5 0 0 0 {I|L} 0.86683 + + 5 + NaN NaN 109202.6 NaN 7793 2593 10379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10390 50.252 NaN 2467500 35 0 321750 0.327 + 23127 RFEEAHFTF 9 91 592.2802198861511 1182.5458868391022 2 592.280517578125 MULTI HCD FTMS 0 0 0 10389 1294312.875 0.860264061817696 -1 0.03299713134765625 1 Unmodified _RFEEAHFTF_ ENSG00000131788|ENST00000393045|PIAS3;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENST00000498436.2_1_1:145578572-145580415:+|nuORF 100.0907132914201 0.004261551473353346 1 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 80.06 0 0 6.7701 6.7701 64.703 0 0 0 0 16.478174818886373 0 0 0 2.0356668758921828 0 0.805462187404089 0.3054621874040891 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]EEAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}EREAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}AE{[RE]|[WV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[HA]{M(Oxidation (M))|F}E{[RE]|[WV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAERE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAEER{M(Oxidation (M))|F};[HA]{[ET]|[MV]}{[HG]|PP}H{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}A{[NV]|[RG]}[NS]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}ATER{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.7701;6.7701;6.2073;4.0627;3.6351;3.6086;3.2721;3.2609;3.2407;3.2093 -;+;-;-;-;-;-;-;-;- + 4136 NaN NaN 460750.7 NaN 7794 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10391 50.257 NaN 829040 35 0 118240 0.263 + 26351 SSIDSEPAL 9 75 459.724343096957 917.434133260714 2 459.7243957519531 MULTI HCD FTMS 0 0 0 10389 483417.28125 0.8053053151020272 2 -0.059284210205078125 2 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 171.46704133333822 3.0280501322097084E-09 1 {[CA]|SS}{I|L}DSEPA{I|L} 9 0 + 86.6 0 0 9.4394 9.4394 97.905 0 0 0 7.003639918940507 7.003639918940507 7.003639918940507 43.02501280419058 0 2.974907363720609 0 1.9049471895720984 0 + + {[CA]|SS}{I|L}DSEPA{I|L};{[CA]|SS}{I|L}D[DP]TA{I|L};[PA]TDSE[VS]{I|L};{[CA]|SS}{I|L}D{I|L}[EP]{[SA]|[TG]};[PA]TD{I|L}D{I|L}{[CA]|SS};[PA]{I|L}ESD{I|L}{[CA]|SS} 9.4394;4.7497;3.3738;1.9609;0.72167;0.23427 +;-;-;-;-;- + 332 NaN NaN 209009.6 NaN 7795 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10392 50.26 NaN 209210 35 0 16816 0.261 + 1885 CYGPHGRQKF 10 67 596.7894210916821 1191.5642892501642 2 597.7787475585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _CYGPHGRQKF_ ENSG00000198445|ENST00000359963|CCT8L2;nc|ENSG00000020219|A6NM43|CCT8L1P 10.073929032068715 0.4168838835836452 1 YY{M(Oxidation (M))|F}[W{I|L}]QE 7 8 31.471 0 0 2.6411 0 0 0 159.11821926408916 159.11821926408916 -2.136605671143741 0 -2.136605671143741 0 0 0 2 0 0 YY{M(Oxidation (M))|F}[W{I|L}]QE 2.6411 - 125 NaN NaN 121228.9 NaN 7796 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10393 50.264 NaN 172180 35 0 13300 0.262 + 30469 VLSNVEVTL 9 54 487.2818933244966 972.5492337157932 2 487.2818908691406 MULTI HCD FTMS 0 0 0 10389 63871.4609375 0.26144146395889206 4 -0.11521530151367188 4 Unmodified _VLSNVEVTL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 22.736283301280096 0.1639198954644489 1 T{I|L} 2 7 30.217 0 0 3.1069 0 0 740.4076560923264 0 740.4076560923264 0 15.946668926028234 0 0 0 0.5 0 0.4247425010840047 0 + T{I|L} 3.1069 + + 85 NaN NaN 110432.8 NaN 7797 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10394 50.267 NaN 206600 35 0 29214 0.261 + 27132 SYMLVNENRF 10 49 644.8032588578159 1287.5919647824317 2 644.8031005859375 MULTI HCD FTMS 0 0 0 10389 68994.5078125 0.5368718101321344 -6 0.157623291015625 5 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 80.89551112106177 0.004675122492633826 1 W{M(Oxidation (M))|F}{I|L}VGGENR{M(Oxidation (M))|F} 10 4 82.414 0 0 6.4007 0 0 63.99808896964448 0 63.99808896964448 0 61.44524706148886 0 0 0 3.048455006504028 0 0.3252574989159953 0.3807196863200844 W{M(Oxidation (M))|F}{I|L}VGGENR{M(Oxidation (M))|F} 6.4007 - 1209 + NaN NaN 118317.8 NaN 7798 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10395 50.27 NaN 79955 35 0 10908 0.261 -1 MPMQDIKMIL 10 36 634.3082891441966 1266.602025355193 2 634.3087768554688 MULTI HCD FTMS 0 0 0 10389 42510.7421875 0.630395382779216 -7 0.1905670166015625 6 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 8.155526934196011 0.43213520406898465 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 20.445 0 0 1.6142 0 0 747.295702049025 0 747.295702049025 0 14.960762528683702 0 0 0 0.4247425010840047 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.6142 + + 6 NaN NaN 95522.8 NaN 7799 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10396 50.274 NaN 219890 35 0 12446 0.262 -1 0 58 533.2731084310496 532.2658319644496 1 533.2910766601562 MULTI HCD FTMS 0 0 0 10389 15946.4775390625 0.5151369413966018 -6 0.157623291015625 7 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 31.254 0 0 5.872 0 0 0 208.11098801241272 208.11098801241272 17.275071725447404 0 0 0 0 0 2 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 5.872 - 16 NaN NaN 126528.5 NaN 7800 2594 10389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10398 50.279 NaN 3179600 35 0 401250 0.327 + 24844 RYPTSIASL 9 102 504.2796071581441 1006.5446613830882 2 504.27984619140625 MULTI HCD FTMS 0 0 0 10397 2109615.25 0.4532815674456116 6 -0.171051025390625 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 96.36657018975838 0.004359138328518304 1 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 80.529 0 0 8.0006 0 0 0 128.0715595724853 128.0715595724853 63.534379787058185 0 0 0 0 1.4247425010840047 1.5228787452803376 2.2179001828205482 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 8.0006 - 2392 NaN NaN 583092.6 NaN 7801 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10399 50.283 NaN 2906000 35 0 564740 0.261 + 10489 IPDSHEITL 9 94 512.7679433634271 NaN 0 512.751220703125 PEAK HCD FTMS 0 0 0 10397 245598 0.8058232358528639 3 -0.08884811401367188 2 Unmodified _IPDSHEITL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;NIPBL-WDR70|1|fusion 52.268347100219714 0.03991945013439704 1 DV{M(Oxidation (M))|F}GEV 6 8 40.38 0 0 3.9452 0 0 131.12983594153894 243.09856592349846 374.2284018650374 0 0 0 0 0 0 0 1.0994850021680094 0 DV{M(Oxidation (M))|F}GEV 3.9452 - 585 + NaN NaN 519638.7 NaN 7802 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10400 50.287 NaN 467900 35 0 70686 0.261 -1 0 71 500.2536832441926 998.4928135551852 2 500.2536315917969 MULTI HCD FTMS 0 0 0 10397 294762.6875 0.1542110423956171 8 -0.23030853271484375 3 NaN NaN 1 TQEPE{I|L} 6 -1 59.962 0 0 6.0053 0 0 283.1528492658219 0 283.1528492658219 0 39.95719564449472 0 0 0 1.805462187404089 0 0.5994850021680094 0.6694451763165201 TQEPE{I|L} 6.0053 - 392 NaN NaN 154807.1 NaN 7803 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10401 50.29 NaN 329250 35 0 19303 0.261 + 34250 YPDRIMNTF 9 73 586.7737018509798 1171.5328507687595 2 586.7747192382812 MULTI HCD FTMS 0 0 0 10397 171768.90625 0.04289893885201464 72 -2.0758705139160156 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 70.92866715596459 0.008787713425443074 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 75.9 0 0 6.4787 6.4787 86.765 0 0 0 8.235228231192409 8.235228231192409 8.235228231192409 6.262874945799766 0 1.860924374808178 1.5228787452803376 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}[QA]Y 6.4787;5.9441;5.7757;5.6927;5.4264;5.1581;4.9897;4.6566;4.6404;4.3653 +;-;+;-;-;-;-;-;-;- + 699 NaN NaN 136005.3 NaN 7804 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10402 50.293 NaN 551950 35 0 53379 0.262 + 10861 IVQGPDPNL 9 77 476.75864355715464 951.5027341811093 2 476.7585754394531 MULTI HCD FTMS 0 0 0 10397 297150.09375 0.4605920888896725 -3 0.082305908203125 5 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 110.5527297667825 0.0028521687250969148 1 [{I|L}V]QGPDPN{I|L} 9 0 + 86.028 0 0 9.0413 9.0413 93.015 0 0 0 24.13734275855269 70.8593385539001 24.13734275855269 9.208187539523749 0 2.1989700043360187 1.6989700043360187 0.3054621874040891 0.6861818737241735 + + [{I|L}V]QGPDPN{I|L};[{I|L}V]QGPDPGG{I|L};[{I|L}V][AG]GPDPN{I|L};[{I|L}V]QGPD{I|L}[NP];[{I|L}V][AG]GPDPGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPDPN{I|L};[{I|L}V][AG]GPD{I|L}[NP];[{I|L}V]Q[HD]EV{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPDPGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPD{I|L}[NP] 9.0413;8.0735;7.6734;7.4527;6.3892;6.0975;6.0849;5.2981;5.1298;4.5089 +;-;-;-;-;-;-;-;-;- + 924 NaN NaN 172278.1 NaN 7805 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10403 50.297 NaN 522570 35 0 103460 0.261 + 6778 FPQYPDKEL 9 76 568.784702871986 1135.554852810772 2 568.7850341796875 MULTI HCD FTMS 0 0 0 10397 163448.03125 0.7465243537520994 7 -0.194061279296875 6 Unmodified _FPQYPDKEL_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 37.07464296494664 0.07877380486334713 1 M{I|L}QY 4 7 33.245 0 0 2.9277 0 0 0 597.2891968753147 597.2891968753147 7.743952596217696 0 0 0 0 0.75 0 0 0.3807196863200844 M{I|L}QY 2.9277 - 647 + NaN NaN 165809.4 NaN 7806 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10404 50.3 NaN 437780 35 0 58766 0.261 + 12961 KYIEGVSDF 9 68 529.2634172441952 1056.5122815551904 2 530.2486572265625 MULTI HCD FTMS 0 0 0 10397 13538.6962890625 0.16462671189574637 -4 0.11182403564453125 7 Unmodified _KYIEGVSDF_ ENSG00000197429|ENST00000396478|IPP;nc|ENSG00000197429|Q9Y573-2|IPP 17.11289562659939 0.2125047172822487 1 SD{M(Oxidation (M))|F} 3 6 20.961 0 0 1.984 0 0 689.3743000598787 0 689.3743000598787 0 2.4485002168009338 0 0 0 0.7059771852360797 0 0 0 + SD{M(Oxidation (M))|F} 1.984 + + 124 + NaN NaN 152099.1 NaN 7807 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10405 50.303 NaN 161480 35 0 21654 0.261 + 16349 LRSIQMEQR 9 61 580.8141060741433 1159.6136592150865 2 580.814208984375 MULTI HCD FTMS 0 0 0 10397 83884.046875 0.3099921378581761 7 -0.194061279296875 8 Unmodified _LRSIQMEQR_ REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF 12.240655878213236 0.2545997876781172 1 YH{I|L} 3 -1 36.198 0 0 3.1215 0 0 728.3989903737408 0 728.3989903737408 0 29.744237387763093 0 0 0 1 0 0 0 YH{I|L} 3.1215 - 48 NaN NaN 107531.5 NaN 7808 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10406 50.307 NaN 255250 35 0 36154 0.261 + 9867 IADLERETF 9 57 547.2796468793699 1092.5447408255397 2 547.2796020507812 MULTI HCD FTMS 0 0 0 10397 46688.05078125 0.47812633811390026 2 -0.05257415771484375 9 Unmodified _IADLERETF_ ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA 13.614867670302875 0.2427269026982664 1 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 7 50.585 0 0 4.63 0 0 282.2192215996993 0 282.2192215996993 0 19.961987796517704 0 0 0 0 0 0.5994850021680094 0 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.63 - 248 + NaN NaN 135748.2 NaN 7809 2595 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10408 50.312 NaN 418880 35 0 46400 0.327 + 2244 DLDRYAIAL 9 56 525.2849507729431 1048.5553486126862 2 525.2848510742188 MULTI HCD FTMS 0 0 0 10407 214430.9375 0.5678733254486291 3 -0.0756378173828125 1 Unmodified _DLDRYAIAL_ REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant;REV__ENSG00000104043|ENST00000284509|ATP8B4;REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF;REV__ENST00000559726.5_1_15:50152393-50311102:-|nuORF 57.47134341890925 0.0211188941628804 1 E{M(Oxidation (M))|F}{I|L}A{I|L} 5 -1 36.732 0 0 3.5031 0 0 457.23997695136876 0 457.23997695136876 0 26.274269105803327 0 0 0 0.8807196863200843 0 1.1549471895720984 0 E{M(Oxidation (M))|F}{I|L}A{I|L} 3.5031 - 83 NaN NaN 141199.5 NaN 7810 2596 10407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10409 50.316 NaN 475560 35 0 37062 0.261 + 2676 DVHGPDWHL 9 62 538.2513849822252 1074.4882170312503 2 538.25146484375 MULTI HCD FTMS 0 0 0 10407 84267.828125 0.018115961940020797 29 -0.8325462341308594 2 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 65.23502041540118 0.010630085227462206 1 [HV]DGPDWH{I|L} 9 2 + 50.319 0 0 4.6831 4.6831 81.295 0 0 0 1.0394201357229491 1.0394201357229491 1.0394201357229491 1.0394201357229491 0 1.5994850021680094 0 0.3054621874040891 0 [HV]DGPDWH{I|L};DVHGPDWH{I|L} 4.6831;4.5863 -;+ + 175 NaN NaN 153925.6 NaN 7811 2596 10407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10410 50.32 NaN 361020 35 0 42291 0.261 + 3665 ELLPEIEFH 9 76 563.7928176483014 1125.5710823634026 2 564.7772827148438 MULTI HCD FTMS 0 0 0 10407 30568.4375 0.7887263867735796 2 -0.05593109130859375 3 Unmodified _ELLPEIEFH_ ENST00000378249.5_1_10:14970078-14970117:-|nuORF 6.723162845929126 0.3000504726104499 1 [HA]{M(Oxidation (M))|F}VE{I|L}HE 8 7 50.883 0 0 4.5207 0 0 0 160.08944454272242 160.08944454272242 23.15797855639381 0 0 0 0 0 1.3979400086720375 0.6549471895720984 0 [HA]{M(Oxidation (M))|F}VE{I|L}HE 4.5207 - 663 NaN NaN 146143.3 NaN 7812 2596 10407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10411 50.323 NaN 264810 35 0 37870 0.261 + 15249 LPAAGVGDMVM 11 58 546.7568773865822 1091.4992018399644 2 546.757568359375 MULTI HCD FTMS 0 0 0 10407 89262.828125 0.10313130013343763 26 -0.7371406555175781 4 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 92.4914307365334 0.011439422034398083 1 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 3 68.458 0 0 6.272 0 0 281.17037020487913 0 281.17037020487913 0 56.151224049127876 0 0 0 3.0501648626366045 0 0.4247425010840047 0 + AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.272 + + 320 + NaN NaN 121237.4 NaN 7813 2596 10407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10412 50.326 NaN 240830 35 0 24088 0.261 + 19060 NEFAHNFNI 9 67 553.2565988782459 1104.4986448232917 2 553.2567138671875 MULTI HCD FTMS 0 0 0 10407 91402.21875 0.8987980235712111 1 -0.019657135009765625 5 Unmodified _NEFAHNFNI_ REV__MID2|p.D377H|1|0.69|ENSG00000080561|chrX:107916057-107916057|G/C|missense_variant 9.38312468134398 0.279288223203164 1 [WH][DV]WH 6 -1 20.635 0 0 1.8683 0 0 0 241.0834440997792 241.0834440997792 6.834843577808201 0 0 0 0 0 1.3979400086720375 0 0 [WH][DV]WH 1.8683 - 281 NaN NaN 122276.5 NaN 7814 2596 10407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10414 50.331 NaN 372540 35 0 47837 0.327 + 34355 YPEGFEIHSM 10 59 613.2633828160687 1224.5122126989372 2 613.2633056640625 MULTI HCD FTMS 0 0 0 10413 200266.4375 0.5893710938861538 7 -0.1907196044921875 1 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 155.02607137521346 8.105858163714844E-08 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 129.27 0 0 10.557 10.557 98.168 0 0 0 106.41416452716277 16.623154686330594 16.623154686330594 32.0609971201948 0 2.778659694992122 1.6989700043360187 2.510574239612792 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPE{I|L}E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]};YPW{[QG]|[NA]}{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 10.557;7.9384;7.5126;7.0157;6.5345;6.5158;6.1886;6.1006;6.0819;6.0434 +;-;+;-;-;-;-;-;-;- + 1903 + NaN NaN 135929.8 NaN 7815 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10415 50.336 NaN 369530 35 0 34604 0.261 + 238 AFDLTEQRY 9 50 571.7774322390353 1141.5403115448705 2 571.7774658203125 MULTI HCD FTMS 0 0 0 10413 181080.640625 0.9464498456333899 -1 0.019657135009765625 2 Unmodified _AFDLTEQRY_ ENSG00000146872|ENST00000346027|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;nc|ENSG00000146872|Q86UE8|TLK2 83.42873516780209 0.004742894019233849 1 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}TEQRY 9 0 + 80.372 0 0 7.0407 7.0407 89.852 0 0 0 5.6424927368725974 11.677353201839438 5.6424927368725974 9.208187539523749 0 2.6989700043360187 0 0.3494850021680094 0.3054621874040891 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}TEQRY;{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}TE[AG]RY;{[{M(Oxidation (M))|F}D]|MM}A{I|L}TEQRY;{[{M(Oxidation (M))|F}D]|MM}A[VP]{M(Oxidation (M))|F}QRY;{[{M(Oxidation (M))|F}D]|MM}A{I|L}TE[AG]RY;{[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}TEQRY;{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}AA{[ES]|[DT]|[{I|L}C]}RY;{[{M(Oxidation (M))|F}D]|MM}A[VP]{M(Oxidation (M))|F}[AG]RY;{[{M(Oxidation (M))|F}D]|MM}A{I|L}A{[WT]|[RM]}RY;{[QN]|[E{I|L}]|[KN]}G{[ET]|[MV]}{M(Oxidation (M))|F}QRY 7.0407;6.234;5.4914;4.7087;4.6847;4.5953;4.379;3.902;3.8985;3.8126 +;-;-;-;-;-;-;-;-;- + 799 + NaN NaN 143379.6 NaN 7816 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10416 50.339 NaN 580570 35 0 137400 0.261 + 12962 KYIEGVSDF 9 74 529.2634172441952 1056.5122815551904 2 529.2635498046875 MULTI HCD FTMS 0 0 0 10413 223377.109375 0.5086143066417229 -2 0.05257415771484375 3 Unmodified _KYIEGVSDF_ ENSG00000197429|ENST00000396478|IPP;nc|ENSG00000197429|Q9Y573-2|IPP 100.0907132914201 0.004261551473353346 1 [YK]{I|L}EGVSD{M(Oxidation (M))|F} 9 0 + 81.459 0 0 7.7102 7.7102 94.516 0 0 0 1.910408031337127 1.910408031337127 1.910408031337127 24.65325193660594 0 2.8516784832448856 0 0.6109243748081782 0 + + [YK]{I|L}EGVSD{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[K{I|L}]VSD{M(Oxidation (M))|F};[YK]{I|L}EGVG[YE];{[{M(Oxidation (M))|F}D]|MM}S[K{I|L}]VSD{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[{I|L}V]KSD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}S[{I|L}V]KSD{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[K{I|L}]VG[YE];{[{M(Oxidation (M))|F}D]|MM}S[K{I|L}]VG[YE];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[{I|L}V]KG[YE];{[{M(Oxidation (M))|F}D]|MM}S[{I|L}V]KG[YE] 7.7102;5.3767;5.2363;5;4.2486;3.872;2.9029;2.5262;1.7748;1.3982 +;-;-;-;-;-;-;-;-;- + 461 NaN NaN 174740.2 NaN 7817 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10417 50.343 NaN 543800 35 0 149710 0.261 + 24682 RYLTGAWRL 9 84 568.3221369682162 1134.6297210032324 2 568.3223266601562 MULTI HCD FTMS 0 0 0 10413 209286.71875 1 0 0 4 Unmodified _RYLTGAWRL_ ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant;ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5 32.037481411007896 0.10189719824197178 1 AWR{I|L} 4 5 27.467 0 0 2.4208 0 0 590.3160877912125 0 590.3160877912125 0 0.4722877531575165 0 0 0 0 0 0 0.3054621874040891 + AWR{I|L} 2.4208 + + 267 NaN NaN 187787.8 NaN 7818 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10418 50.346 NaN 873140 35 0 89535 0.261 + 8576 HAVIQEYML 9 90 560.27860637595 1118.5426598186998 2 560.2879028320312 MULTI HCD FTMS 0 0 0 10413 95206.2578125 0.23367122187198044 8 -0.22742462158203125 5 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 45.69961567697781 0.039180348357221985 1 {[QN]|[E{I|L}]|[KN]}[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AP{M(Oxidation (M))|F}{I|L} 10 6 + 55.357 0 0 4.949 4.949 82.952 0 0 0 0.9666495944125586 3.731764029428575 0.9666495944125586 3.521825181113627 0 0.5 1.2218487496163564 1.3243923658886185 0 {[QN]|[E{I|L}]|[KN]}[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AP{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[VS][WE]P{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}WV{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F}{I|L};[EP][HK][VS]Y{M(Oxidation (M))|F}{I|L};[EP][HK]T[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{I|L};[EP]{I|L}[MN]QQ{M(Oxidation (M))|F}{I|L};[EP]{I|L}A{[CA]|SS}QQ{M(Oxidation (M))|F}{I|L};[EP]A[VG]MQQ{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}P[MN]QQ{M(Oxidation (M))|F}{I|L};[EP]{I|L}[W{M(Oxidation (M))|F}][WE]{I|L} 4.949;4.6342;4.1695;4.0152;3.8323;3.3349;3.0658;2.9132;2.7509;2.692 -;-;-;-;-;-;-;-;-;- 1481 NaN NaN 206690 NaN 7819 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10419 50.349 NaN 198620 35 0 20733 0.261 + 34588 YPNKYESII 9 57 563.7928176483014 1125.5710823634026 2 563.792724609375 MULTI HCD FTMS 0 0 0 10413 129436.234375 0.8637675879408774 3 -0.09222793579101562 6 Unmodified _YPNKYESII_ AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1 24.990960013464015 0.14443998892849796 1 S{I|L}{I|L} 3 6 33.812 0 0 3.004 0 0 794.3617357556759 0 794.3617357556759 0 12.614393726401687 0 0 0 0 0 0.7614393726401688 0 + S{I|L}{I|L} 3.004 + + 22 NaN NaN 109228.2 NaN 7820 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10420 50.353 NaN 276130 35 0 33259 0.261 + 31770 VYLPTHTSL 9 52 515.7817873575486 1029.5490217818972 2 515.7816772460938 MULTI HCD FTMS 0 0 0 10413 61046.3203125 0.2995687229316075 4 -0.11847686767578125 7 Unmodified _VYLPTHTSL_ ENSG00000007944|ENST00000356840|MYLIP 16.942295170755138 0.21397866736869717 1 [YV]{I|L} 3 6 37.447 0 0 3.6373 0 0 0 651.3111109947594 651.3111109947594 23.278324880759484 0 0 0 0 1 1.6989700043360187 0 0 + [YV]{I|L} 3.6373 + + 69 NaN NaN 138063.8 NaN 7821 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10421 50.356 NaN 164310 35 0 21094 0.261 + 14153 LAFEQSLTQI 10 61 575.3119089507968 1148.6092649683935 2 575.7984008789062 MULTI HCD FTMS 0 0 0 10413 26768.255859375 0.9715431201814844 -1 0.019657135009765625 8 Unmodified _LAFEQSLTQI_ REV__ENSG00000103043|ENST00000261776|VAC14;REV__ENST00000566655.1_1_16:70820075-70820303:-|nuORF 7.608950283845883 0.4350283211712914 1 QA[SG]D 5 -1 18.328 0 0 1.5956 0 0 130.11601956369606 557.2962130182249 687.412232581921 0 0 0 0 0 0 0 0.805462187404089 0.3054621874040891 QA[SG]D 1.5956 - 53 + NaN NaN 107244.5 NaN 7822 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10422 50.359 NaN 180440 35 0 19390 0.261 + 25574 SFSPKTYSF 9 56 532.25850928975 1062.5024656463 2 532.2586669921875 MULTI HCD FTMS 0 0 0 10413 61351.62890625 0.7315747331706786 1 -0.036273956298828125 9 Unmodified _SFSPKTYSF_ ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF 38.175570920033316 0.07371992880350783 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RV{[{M(Oxidation (M))|F}C]|[YS]}AS{M(Oxidation (M))|F} 9 5 + 44.445 0 0 4.1831 4.1831 87.379 0 0 0 11.469771685254386 13.109528539627178 11.469771685254386 15.771147014961496 0 1.3737125054200234 2 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RV{[{M(Oxidation (M))|F}C]|[YS]}AS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RV[HD]S{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HC]VVR{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RVV[HC]{[ES]|[DT]|[{I|L}C]};{[QV]|[N{I|L}]|[RA]|[KV]}YVV[HC]{[ES]|[DT]|[{I|L}C]};[Y{I|L}]NVV[HC]{[ES]|[DT]|[{I|L}C]} 4.1831;2.6988;2.5094;2.2282;0.39054;0.044205 -;-;-;-;-;- 142 NaN NaN 111129.6 NaN 7823 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10423 50.363 NaN 442560 35 0 51882 0.261 + 20308 NYQGHFHLF 9 73 581.775081217829 1161.5356095024579 2 581.7753295898438 MULTI HCD FTMS 0 0 0 10413 121232.9453125 0.3801059674842185 -4 0.1119384765625 10 Unmodified _NYQGHFHLF_ ENST00000283632.4_1_2:86968058-86968091:+|nuORF 109.62928328672726 0.0030029239606406397 1 [YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F} 9 0 + 82.219 0 0 7.0785 7.0785 89.925 0 0 0 5.41325298820567 5.41325298820567 5.41325298820567 9.208187539523749 0 2.548455006504028 2 0 0.9163865622122673 + + [YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YN][AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YQ]NGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}SGNGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YQ]GGGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YN]{[MS]|[{M(Oxidation (M))|F}A]}[HN]H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YQ]{[CT]|[{M(Oxidation (M))|F}G]}[HN]H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[WK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.0785;6.2857;4.712;4.4283;3.9193;3.8768;3.2786;1.5103;0.77593 +;-;-;-;-;-;-;-;- + 394 NaN NaN 147972.1 NaN 7824 2597 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10425 50.368 NaN 426600 35 0 56695 0.327 + 21669 PYVNNVPHL 9 74 526.7797095306722 1051.5448661281443 2 526.7799072265625 MULTI HCD FTMS 0 0 0 10424 176352.5625 0.8084186514050353 1 -0.01970672607421875 1 Unmodified _PYVNNVPHL_ ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1 53.57557251787612 0.02656881086235134 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VS{[NV]|[RG]}RA{M(Oxidation (M))|F} 9 4 + 44.975 0 0 4.2771 4.2771 85.104 0 0 0 8.292904355637248 11.859051454151952 8.292904355637248 9.208187539523749 0 1.7302046884880937 1.5228787452803376 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VS{[NV]|[RG]}RA{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VS{[NV]|[RG]}[VG]A{M(Oxidation (M))|F};[YT]{[QV]|[N{I|L}]|[RA]|[KV]}[PA]RA{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VS{[NV]|[RG]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};[HV]P{[QV]|[N{I|L}]|[RA]|[KV]}{[SA]|[TG]}PA{M(Oxidation (M))|F} 4.2771;3.4014;3.1938;2.1343;1.9883 -;-;-;-;- 344 NaN NaN 152579 NaN 7825 2598 10424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10426 50.372 NaN 99362 35 0 11410 0.261 + 30069 VFTKSPYQEF 10 40 623.3111409777752 1244.6077290223502 2 623.3109741210938 MULTI HCD FTMS 0 0 0 10424 58210.76171875 0.3130335839710188 6 -0.15444564819335938 2 Unmodified _VFTKSPYQEF_ ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF 19.143941131932106 0.33204605063940484 1 E{M(Oxidation (M))|F} 2 8 21.454 0 0 1.7237 0 0 950.4852772443375 0 950.4852772443375 0 7.673428491353533 0 0 0 0 0 0.5 0 + E{M(Oxidation (M))|F} 1.7237 + + 14 NaN NaN 96664.3 NaN 7826 2598 10424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10427 50.376 NaN 208440 35 0 21064 0.263 + 16605 LVQVNEWS 8 63 487.7498420636011 973.4851311940022 2 487.7502746582031 MULTI HCD FTMS 0 0 0 10424 124229.71875 1 0 0 3 Unmodified _LVQVNEWS_ nc|ENSG00000115561|Q9Y3E7-3|CHMP3 34.10243960390752 0.30669083636501265 1 {I|L}VQ[DP]G 6 5 57.51 0 0 5.9077 0 0 0 361.14817224674067 361.14817224674067 52.02561882712928 0 0 0 0 1.055462187404089 2 0.8807196863200843 0.4247425010840047 {I|L}VQ[DP]G 5.9077 - 68 + NaN NaN 116801.9 NaN 7827 2598 10424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10428 50.379 NaN 71360 35 0 8239.9 0.261 + 24400 RYKGPGFEYF 10 32 632.3116118557924 1262.6086707783847 2 632.31201171875 MULTI HCD FTMS 0 0 0 10424 33845.48828125 0.0756921950818255 17 -0.47721099853515625 4 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 9.243775137331637 0.4246488630196457 1 EY{M(Oxidation (M))|F} 3 7 26.198 0 0 2.0749 0 0 805.4235096662125 0 805.4235096662125 0 10.740312677277187 0 0 0 0 0 0 0 + EY{M(Oxidation (M))|F} 2.0749 + + 7 NaN NaN 95484.8 NaN 7828 2598 10424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10429 50.382 NaN 168790 35 0 30699 0.264 + 30603 VPAWDHTL 8 51 469.7401766241481 937.4658003150962 2 469.7402038574219 MULTI HCD FTMS 0 0 0 10424 64487.625 0.5515615943776963 -1 0.036273956298828125 5 Unmodified _VPAWDHTL_ ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3 53.57557251787612 0.1056313556323 1 VPA 3 5 48.94 0 0 5.2205 0 0 0 667.2839449518186 667.2839449518186 27.486512420283233 0 0 0 0 0.4247425010840047 2 0 0 + VPA 5.2205 + + 14 + NaN NaN 113106 NaN 7829 2598 10424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10431 50.387 NaN 1718600 35 0 229580 0.327 + 23128 RFEEAHFTF 9 79 592.2802198861511 1182.5458868391022 2 592.2804565429688 MULTI HCD FTMS 0 0 0 10430 855735.0625 0.5687636543877151 4 -0.12175369262695312 1 Unmodified _RFEEAHFTF_ ENSG00000131788|ENST00000393045|PIAS3;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENST00000498436.2_1_1:145578572-145580415:+|nuORF 103.41943736471063 0.004016698775839292 1 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 62.334 0 0 5.2712 5.2712 82.67 0 0 0 1.7609125905568135 12.385606273598313 1.7609125905568135 1.7609125905568135 0 1.8539171939081172 0 0.805462187404089 0.28872548999643577 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]EEAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAERE{M(Oxidation (M))|F};{M(Oxidation (M))|F}HEH{[HG]|PP}[TA]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAER{M(Oxidation (M))|F}E;{M(Oxidation (M))|F}ER{M(Oxidation (M))|F}AH{M(Oxidation (M))|F}{[ET]|[MV]};[HA]{[ET]|[MV]}{[HG]|PP}H{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ET]|[MV]}[HA]{[HG]|PP}H{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}A{[NV]|[RG]}[NS]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}AT{M(Oxidation (M))|F}ERE{M(Oxidation (M))|F} 5.2712;5.1223;3.682;3.3524;3.3421;3.2375;3.2355;3.2355;3.1209;3.0746 -;+;-;-;-;-;-;-;-;- + 2922 NaN NaN 352139.9 NaN 7830 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10432 50.392 NaN 1071600 35 0 116080 0.261 + 6779 FPQYPDKEL 9 110 568.784702871986 1135.554852810772 2 569.3004150390625 MULTI HCD FTMS 0 0 0 10430 20907.91015625 0.1447297618854476 12 -0.3323516845703125 2 Unmodified _FPQYPDKEL_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 26.268140514670165 0.13340543277302316 1 TTV[NP]C(Carbamidomethyl (C))T[{I|L}T] 9 7 42.33 0 0 3.7277 0 0 130.06092964220664 0 130.06092964220664 0 17.549406363485858 0 0 0 0 0 1.6237125054200234 0.2614393726401688 TTV[NP]C(Carbamidomethyl (C))T[{I|L}T] 3.7277 - 1699 + NaN NaN 245675.8 NaN 7831 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10433 50.395 NaN 253330 35 0 29273 0.262 + 26352 SSIDSEPAL 9 48 459.724343096957 917.434133260714 2 459.7244567871094 MULTI HCD FTMS 0 0 0 10430 119302.0546875 0.19874047219414845 7 -0.19112777709960938 3 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 46.020951573049366 0.037705236580089195 1 SE[PA]{I|L} 5 4 42.619 0 0 4.6455 0 0 402.1730213849625 0 402.1730213849625 0 23.15552802072581 0 0 0 1.4247425010840047 0 1.1549471895720984 0 + SE[PA]{I|L} 4.6455 + + 27 NaN NaN 119838.3 NaN 7832 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10434 50.399 NaN 303750 35 0 103270 0.261 + 24405 RYKGPGFEYF 10 55 421.8765733280575 1262.6078905843724 3 421.8769226074219 MULTI HCD FTMS 0 0 0 10430 81366.7265625 0.10507031347227161 18 -0.5167007446289062 4 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 7.945399516374404 0.4332474418965133 1 Y{M(Oxidation (M))|F} 2 8 30.969 0 0 2.4528 0 0 934.4659666115193 0 934.4659666115193 0 26.989700043360187 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F} 2.4528 + + 23 + NaN NaN 122333.2 NaN 7833 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10435 50.402 NaN 140370 35 0 19179 0.261 + 24788 RYPDRITLI 9 48 573.8350666957131 1145.655580458226 2 573.8349609375 MULTI HCD FTMS 0 0 0 10430 90547.5234375 0.038457954574413186 25 -0.7206993103027344 5 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 11.494710602746466 0.2610445893512368 1 RY 2 7 22.206 0 0 1.9383 0 0 0 823.4671813771847 823.4671813771847 14.247425010840047 0 0 0 0 0.4247425010840047 0 0 0 + RY 1.9383 + + 19 + NaN NaN 104350.2 NaN 7834 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10436 50.405 NaN 234980 35 0 19055 0.261 -1 YSGCCLMDL 9 63 539.2064304598488 1076.3983079864975 2 539.2066040039062 MULTI HCD FTMS 0 0 0 10430 28096.447265625 0.3749533959738709 1 -0.03624725341796875 6 Carbamidomethyl (C),Oxidation (M) _YSGC(Carbamidomethyl (C))CLM(Oxidation (M))DL_ ENSG00000196748|ENST00000403376|CLPSL2;nc|ENSG00000196748|Q6UWE3-2|CLPSL2 3.944395688203298 0.32111559684428237 1 VD{I|L} 3 -1 20.819 0 0 1.9341 0 0 731.2094593732437 0 731.2094593732437 0 11.177842092606605 0 0 0 0.7887254899964358 0 0 0 VD{I|L} 1.9341 - 119 NaN NaN 113186.1 NaN 7835 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10437 50.409 NaN 109240 35 0 25398 0.261 + 4855 FADGKVYAL 9 42 492.26344495075915 982.5123369683183 2 492.2633972167969 MULTI HCD FTMS 0 0 0 10430 68407.7421875 0.9694218083042297 -2 0.055980682373046875 7 Unmodified _FADGKVYAL_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000562988.5_1_16:2052496-2059683:-|nuORF;ENST00000565396.5_1_16:2053615-2059683:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 29.84058131909904 0.11198220037953927 1 D[RK]YA{I|L} 6 4 36.203 0 0 3.6847 0 0 218.10522658515782 0 218.10522658515782 0 18.244171855527966 0 0 0 1.3807196863200843 0 0 0 D[RK]YA{I|L} 3.6847 - 29 NaN NaN 102232.7 NaN 7836 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10438 50.412 NaN 230250 35 0 28465 0.261 + 4789 EYVEKFYRI 9 70 416.22019191672985 1245.6387463503895 3 416.2202453613281 MULTI HCD FTMS 0 0 0 10430 34358.51953125 0.013160676735854488 56 -1.6183586120605469 8 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 5.783430956126388 0.3071743400961265 1 {I|L}EV[C(Carbamidomethyl (C))N] 5 8 20.713 0 0 1.6629 0 0 612.349412986525 0 612.349412986525 0 6.109243748081781 0 0 0 0 0 0 0 {I|L}EV[C(Carbamidomethyl (C))N] 1.6629 - 81 NaN NaN 123880 NaN 7837 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10439 50.415 NaN 126410 35 0 13894 0.261 + 30455 VLQATNPNL 9 48 485.27200048472713 968.5294480362543 2 485.272216796875 MULTI HCD FTMS 0 0 0 10430 35506.3046875 0.9573071333889838 1 -0.03624725341796875 9 Unmodified _VLQATNPNL_ ENSG00000174460|ENST00000310164|ZCCHC12 7.910154910731844 0.2910521888787154 1 [{I|L}V]Q 3 6 10.458 0 0 1.0797 0 0 0 625.2959329818199 625.2959329818199 1.5051499783199063 0 0 0 0 0 0 0 0 + [{I|L}V]Q 1.0797 + + 69 NaN NaN 102541.1 NaN 7838 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10440 50.419 NaN 175700 35 0 16371 0.261 + 28002 TFPLCSFFG 9 58 509.739953091688 1017.465353250176 2 509.74041748046875 MULTI HCD FTMS 0 0 0 10430 25466.46484375 0.5587473577106169 4 -0.12175369262695312 10 Unmodified _TFPLCSFFG_ REV__ENST00000335393.8_1_19:17664253-17664490:+|nuORF 6.723162845929126 0.3000504726104499 1 T{M(Oxidation (M))|F}HA 4 -1 35.745 0 0 3.5132 0 0 0 558.2312105768186 558.2312105768186 24.830247312148472 0 0 0 0 0.3807196863200844 0 0 0 T{M(Oxidation (M))|F}HA 3.5132 - 52 + NaN NaN 117956 NaN 7839 2599 10430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10442 50.424 NaN 2261200 35 0 390560 0.327 + 9339 HPSDIEVDL 9 108 512.751023541715 1023.48749415023 2 513.7678833007812 MULTI HCD FTMS 0 0 0 10441 90783.1953125 0.30218554523038166 5 -0.13519668579101562 1 Unmodified _HPSDIEVDL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 30.636539890814138 0.10832830463492794 1 EHS{I|L}CVS 7 6 46.789 0 0 4.5715 0 0 0 265.1305509663265 265.1305509663265 6.92925663582556 0 0 0 0 0.535666875892183 0 1.024227503252014 0 EHS{I|L}CVS 4.5715 - 3394 + NaN NaN 427193.2 NaN 7840 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10443 50.428 NaN 1171400 35 0 159410 0.261 + 24845 RYPTSIASL 9 85 504.2796071581441 1006.5446613830882 2 504.27984619140625 MULTI HCD FTMS 0 0 0 10441 609434.875 0.130945960594483 11 -0.29610443115234375 2 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 61.60191391372663 0.015340508911304802 1 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 63.456 0 0 6.3043 0 0 0 128.07217809752743 128.07217809752743 50.168018248536626 0 0 0 0 1.2614393726401687 1.5228787452803376 0.9749073637206093 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 6.3043 - 512 NaN NaN 262503.4 NaN 7841 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10444 50.432 NaN 259250 35 0 28149 0.261 + 27133 SYMLVNENRF 10 55 644.8032588578159 1287.5919647824317 2 645.3051147460938 MULTI HCD FTMS 0 0 0 10441 91214.5078125 0.9098436712076025 1 -0.026248931884765625 3 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 87.12335221954112 0.0012232043428923125 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 10 0 + 98.141 0 0 7.6221 7.6221 90.048 0 0 0 6.544387449636204 91.15147224576965 6.544387449636204 9.164539485499247 0 3.4247425010840047 0 0.805462187404089 0.8494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}VNEGGR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}VGGENR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}VGGEGGR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[PA]{[CA]|SS}NR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[PA][C(Carbamidomethyl (C))K]R{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}V[PA]{I|L}{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[PA]V{I|L}{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}[WK]GR{I|L}{M(Oxidation (M))|F}[MT] 7.6221;6.9103;6.5804;5.8715;5.103;4.4377;3.5948;3.2991;2.4797 +;-;-;-;-;-;-;-;- + 1934 NaN NaN 125102 NaN 7842 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10445 50.435 NaN 168320 35 0 13822 0.262 + 1352 AYPHNLMTF 9 47 555.2577483138126 1108.5009436944251 2 555.2581787109375 MULTI HCD FTMS 0 0 0 10441 105388.5546875 0.07326584856706347 53 -1.5262603759765625 4 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 52.268347100219714 0.028397529699942435 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 3 + 48.016 0 0 4.3316 4.3316 89.919 0 0 0 19.51090597957851 29.164406112826242 19.51090597957851 48.01592489342816 0 0.9247425010840047 2 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.3316 - 121 NaN NaN 117327.1 NaN 7843 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10446 50.438 NaN 112790 35 0 12670 0.261 -1 DQEMLMKLMI 10 41 634.3082891441966 1266.602025355193 2 634.3087768554688 MULTI HCD FTMS 0 0 0 10441 38597.55078125 0.5723663372370126 -1 0.03624725341796875 5 Oxidation (M) _DQEMLMKLM(Oxidation (M))I_ ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 7.608950283845883 0.4350283211712914 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 20.005 0 0 1.5794 0 0 747.2940187664475 0 747.2940187664475 0 9.54750954047803 0 0 0 0.3807196863200844 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.5794 + + 16 NaN NaN 99956.8 NaN 7844 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10447 50.442 NaN 341820 35 0 87097 0.261 + 23590 RPEEDAAALEL 11 53 607.3065644009738 1212.5985758687475 2 607.3070068359375 MULTI HCD FTMS 0 0 0 10441 122202.7265625 0.3668515971863456 -5 0.14480209350585938 6 Unmodified _RPEEDAAALEL_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 34.221707139014875 0.1741640856101893 1 AA{I|L}E{I|L} 5 6 54.821 0 0 4.5209 0 0 697.3032093732437 0 697.3032093732437 0 24.363044005075736 0 0 0 1.305462187404089 0 0.3807196863200844 0 + AA{I|L}E{I|L} 4.5209 + + 86 NaN NaN 143507.3 NaN 7845 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10448 50.445 NaN 77016 35 0 16120 0.261 + 9994 IEMPNNGWEI 10 31 601.7790637740396 1201.5435746148792 2 601.7793579101562 MULTI HCD FTMS 0 0 0 10441 58789.04296875 0.18468651778645884 35 -1.0132713317871094 7 Unmodified _IEMPNNGWEI_ REV__ENSG00000171246|ENST00000306773|NPTX1 12.240655878213236 0.39661705172222156 1 VE{I|L} 3 -1 26.198 0 0 2.1804 0 0 842.3405628888687 0 842.3405628888687 0 22.21848749616356 0 0 0 0 0 0 0 VE{I|L} 2.1804 - 8 NaN NaN 95356.7 NaN 7846 2600 10441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10450 50.45 NaN 689930 35 0 65193 0.327 + 10862 IVQGPDPNL 9 75 476.75864355715464 951.5027341811093 2 476.75848388671875 MULTI HCD FTMS 0 0 0 10449 403231.875 0.6250222211587282 3 -0.07224273681640625 1 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 121.5340881639634 0.001118397630175091 1 [{I|L}V]QGPDPN{I|L} 9 0 + 80.46 0 0 8.4561 8.4561 91.289 0 0 0 24.13734275855269 59.51167895154896 24.13734275855269 9.075221787320515 0 2.25 1.6989700043360187 0.25 0.6109243748081782 + + [{I|L}V]QGPDPN{I|L};[{I|L}V]QGPDPQV;[{I|L}V]QGPDPGG{I|L};[{I|L}V][AG]GPDPN{I|L};[{I|L}V]QGPDP[AG]V;[{I|L}V][AG]GPDPQV;[{I|L}V][AG]GPDPGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPDPN{I|L};[{I|L}V][AG]GPDP[AG]V;[{I|L}V]Q[HD]EV{I|L} 8.4561;7.5023;7.4884;7.1673;6.5346;6.2135;5.8831;5.5123;5.2504;5.0145 +;-;-;-;-;-;-;-;-;- + 617 NaN NaN 186995.2 NaN 7847 2601 10449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10451 50.454 NaN 786680 35 0 93683 0.261 + 18577 MVSDEYEQL 9 83 565.2396424612895 1128.4647319893788 2 565.23974609375 MULTI HCD FTMS 0 0 0 10449 376558 0.3259958412714044 -4 0.11847686767578125 2 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 114.6490535036381 0.0021834323520089267 1 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 64.134 0 0 5.6833 5.6833 87.42 0 0 0 2.2970065362161662 38.909328277719766 2.2970065362161662 9.208187539523749 0 1.6549471895720984 0 1.1421590589602533 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}QY{[{M(Oxidation (M))|F}D]|MM}SD{I|L};[Q{I|L}]EY{[{M(Oxidation (M))|F}D]|MM}SD{I|L};{[QN]|[E{I|L}]|[KN]}ET[YC(Carbamidomethyl (C))]SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{[{M(Oxidation (M))|F}D]|MM}SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{[{M(Oxidation (M))|F}D]|MM}SD{I|L};[YE]Q{I|L}{[{M(Oxidation (M))|F}D]|MM}SD{I|L} 5.6833;4.8673;3.7851;3.3973;2.8633;2.7097;2.6258;2.5966;2.4644;2.2248 +;-;-;-;-;-;-;-;-;- + 1260 NaN NaN 221113.7 NaN 7848 2601 10449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10452 50.458 NaN 332250 35 0 17448 0.261 + 34251 YPDRIMNTF 9 76 586.7737018509798 1171.5328507687595 2 586.774169921875 MULTI HCD FTMS 0 0 0 10449 129873.140625 0.03243555565337352 78 -2.246417999267578 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 83.27773906761396 0.004791753909894001 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 82.921 0 0 7.078 7.078 87.708 0 0 0 10.823099094024116 10.823099094024116 10.823099094024116 5.897554856604174 0 2.087180496500464 1.3979400086720375 0 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRYPNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRYPGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QQK{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[QA]K{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 7.078;6.5746;6.4243;6.292;6.1542;5.7886;5.6383;5.3682;5.2515;5.2125 +;-;-;-;+;-;-;-;-;- + 2487 NaN NaN 137020.7 NaN 7849 2601 10449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10453 50.461 NaN 155680 35 0 13205 0.262 + 23237 RGFLDNLL 8 44 474.26915968985134 946.5237664465027 2 474.26922607421875 MULTI HCD FTMS 0 0 0 10449 86181.7890625 0.4025737010134567 -5 0.13813400268554688 4 Unmodified _RGFLDNLL_ REV__ENSG00000162104|ENST00000294016|ADCY9 30.224811164608877 0.3565035853404968 1 {I|L}{I|L} 2 -1 19.196 0 0 2.028 0 0 702.3472157209 0 702.3472157209 0 12.206225184280797 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.028 + + 5 NaN NaN 104532.4 NaN 7850 2601 10449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10454 50.464 NaN 138230 35 0 19891 0.261 + 15971 LPQHEEICL 9 53 541.2709585487263 1080.5273641642525 2 541.2702026367188 MULTI HCD FTMS 0 0 0 10449 32595.396484375 0.1309452972581151 -7 0.197418212890625 5 Unmodified _LPQHEEICL_ ENSG00000143624|ENST00000318967|INTS3;ENST00000481797.5_1_1:153701080-153719633:+|nuORF;nc|ENSG00000143624|Q68E01|INTS3 13.042465956692817 0.2476723265019929 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}C{I|L}{I|L} 9 5 + 40.864 0 0 3.7818 3.7818 80.584 0 0 0 4.665762445130497 35.37909996297415 4.665762445130497 1.9897000433601804 0 0.5 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}C{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}C{I|L} 3.7818;3.5977 -;- 49 NaN NaN 119956.5 NaN 7851 2601 10449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10455 50.468 NaN 70319 35 0 9734.1 0.262 -1 0 36 438.2303734676425 437.2230970010425 1 438.2308654785156 MULTI HCD FTMS 0 0 0 10449 6246.22705078125 0.3352411955464818 2 -0.05925750732421875 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.3402 0 0 272.17713555260343 0 272.17713555260343 0 0.6246936830414995 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.3402 - 4 + NaN NaN 91865.6 NaN 7852 2601 10449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10457 50.473 NaN 623800 35 0 138190 0.326 + 12963 KYIEGVSDF 9 73 529.2634172441952 1056.5122815551904 2 529.2634887695312 MULTI HCD FTMS 0 0 0 10456 267646.5 0.6094126627543297 3 -0.0859375 1 Unmodified _KYIEGVSDF_ ENSG00000197429|ENST00000396478|IPP;nc|ENSG00000197429|Q9Y573-2|IPP 83.42873516780209 0.004742894019233849 1 [YK]{I|L}EGVSD{M(Oxidation (M))|F} 9 0 + 80.314 0 0 7.6018 7.6018 93.787 0 0 0 4.762036441594191 60.71456278567766 4.762036441594191 19.445830421822663 0 2.524227503252014 0 1 0 + + [YK]{I|L}EGVSD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SK{I|L}VSD{M(Oxidation (M))|F};[YK]{[DA]|[EG]}{I|L}VSD{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YN]{I|L}VSD{M(Oxidation (M))|F};[YK]{I|L}EGVG[YE];[YK]{I|L}W{[MG]|[TS]}{I|L}{M(Oxidation (M))|F};[YK]W{I|L}{[MG]|[TS]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SK{I|L}VG[YE];[YK]{[DA]|[EG]}{I|L}VG[YE];{[TV]|[{I|L}S]}[YN]{I|L}VG[YE] 7.6018;5.7612;5.2354;4.6946;4.3831;3.7266;2.7063;2.5425;2.0167;1.4759 +;-;-;-;-;-;-;-;-;- + 612 NaN NaN 179330 NaN 7853 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10458 50.477 NaN 234030 35 0 33395 0.261 + 34356 YPEGFEIHSM 10 55 613.2633828160687 1224.5122126989372 2 613.2630615234375 MULTI HCD FTMS 0 0 0 10456 144200.046875 0.42437135461179515 12 -0.3389930725097656 2 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 103.35351024395868 5.937367541898016E-05 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 112.89 0 0 9.2188 9.2188 97.067 0 0 0 88.90092514408778 14.176127934005436 14.176127934005436 29.318722087674658 0 2.079689690656103 1.5228787452803376 1.872363747448347 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YPEG{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HS]{[QN]|[E{I|L}]|[KN]};[EP]Y[W{M(Oxidation (M))|F}]{I|L}E{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}E][HA]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}GE{[QN]|[E{I|L}]|[KN]} 9.2188;6.8245;6.0412;4.8995;3.0819;1.9402 +;-;-;-;-;- + 446 + NaN NaN 121668.2 NaN 7854 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10459 50.481 NaN 214500 35 0 30916 0.262 + 8501 HAEIAQPLL 9 39 496.28220325732343 990.5498535814469 2 496.28228759765625 MULTI HCD FTMS 0 0 0 10456 79970.453125 1 0 0 3 Unmodified _HAEIAQPLL_ ENSG00000112796|ENST00000371383|ENPP5 13.042465956692817 0.2476723265019929 1 {I|L}{I|L} 2 7 20.969 0 0 2.1169 0 0 746.3517605278857 0 746.3517605278857 0 6.928031367991565 0 0 0 0 0 0 0 + {I|L}{I|L} 2.1169 + + 13 NaN NaN 110215.7 NaN 7855 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10460 50.484 NaN 201190 35 0 25499 0.261 + -1 STTGQPFCFF 10 68 596.2583168322127 NaN 0 596.2791137695312 PEAK HCD FTMS 0 0 0 10456 12071.4599609375 1 0 0 4 Carbamidomethyl (C) _STTGQPFC(Carbamidomethyl (C))FF_ REV__nc|ENSG00000060237|Q9H4A3-5|WNK1;REV__nc|ENSG00000060237|Q9H4A3-6|WNK1;REV__nc|ENSG00000060237|Q9H4A3-7|WNK1 6.2057823575117 0.3348729994311477 1 SA 2 -1 10.969 0 0 0.92138 0 0 131.05557271377353 898.3579270031472 1029.4134997169208 0 0 0 0 0 0 0 0 0 SA 0.92138 - 14 + NaN NaN 131674.9 NaN 7856 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10461 50.487 NaN 130890 35 0 7147.1 0.261 + 25575 SFSPRTKEL 9 59 532.790728147311 NaN 0 532.7902221679688 PEAK HCD FTMS 0 0 0 10456 39553.46875 0.8748373021176882 -4 0.10521316528320312 5 Unmodified _SFSPRTKEL_ REV__ENSG00000181143|ENST00000397910|MUC16;REV__MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;REV__MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant 11.494710602746466 0.23954507882326587 1 DVVVRS 6 -1 21.49 0 0 2.0205 0 0 243.12276381239695 162.0554598443969 405.1782236567939 0 0 0 0 0 0 0 1.25 0.3494850021680094 DVVVRS 2.0205 - 39 + NaN NaN 129628.9 NaN 7857 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10462 50.491 NaN 189200 35 0 16169 0.261 + 34652 YPSLREAAL 9 58 510.27973272332974 1018.5449125134595 2 510.27996826171875 MULTI HCD FTMS 0 0 0 10456 72006.671875 0.19975370327169542 -12 0.3288116455078125 6 Unmodified _YPSLREAAL_ chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4 29.84058131909904 0.11198220037953927 1 YPS{I|L} 4 5 54.725 0 0 5.3728 0 0 0 555.2893160455686 555.2893160455686 38.52690962719841 0 0 0 0 0.5 1.6989700043360187 0.3807196863200844 0 + YPS{I|L} 5.3728 + + 65 + NaN NaN 117433.7 NaN 7858 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10463 50.494 NaN 233080 35 0 39674 0.261 + 16094 LPSSRQLVL 9 55 506.8109412509241 1011.6073295686482 2 506.81103515625 MULTI HCD FTMS 0 0 0 10456 29779.962890625 0.7121475445914802 3 -0.0859375 7 Unmodified _LPSSRQLVL_ DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 5.731851221503515 0.3075653528928475 1 A{M(Oxidation (M))|F} 2 9 20.969 0 0 2.0728 0 0 775.4914065723576 0 775.4914065723576 0 8.26606256887672 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 2.0728 - 21 + NaN NaN 132848.1 NaN 7859 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10464 50.497 NaN 205710 35 0 20880 0.261 + 35318 YWMHVQNTF 9 60 621.2742868178269 1240.5340207024537 2 621.2747802734375 MULTI HCD FTMS 0 0 0 10456 78185.6875 0.22461235739545252 -11 0.30588531494140625 8 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 71.92227651296345 0.008466197542043549 1 QNT{M(Oxidation (M))|F} 4 5 49.68 0 0 4.0048 0 0 732.3055345519892 0 732.3055345519892 0 32.730012720637376 0 0 0 1.3494850021680094 0 0 0.4247425010840047 + QNT{M(Oxidation (M))|F} 4.0048 + + 184 NaN NaN 120120.1 NaN 7860 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10465 50.501 NaN 223680 35 0 27218 0.261 + 2078 DESGSVDQSPM 11 74 576.2304443514996 1150.4463357697991 2 576.2315673828125 MULTI HCD FTMS 0 0 0 10456 51600.1328125 0.4410159097976285 -2 0.049259185791015625 9 Unmodified _DESGSVDQSPM_ REV__ENSG00000010072|ENST00000295050|SPRTN 10.150570793230772 0.3686401556411756 1 SD{I|L} 3 -1 39.253 0 0 3.4119 0 0 817.306932517775 0 817.306932517775 0 25.542359562158126 0 0 0 1 0 0.3054621874040891 0 SD{I|L} 3.4119 - 163 NaN NaN 126372.2 NaN 7861 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10466 50.504 NaN 58258 35 0 10295 0.261 + 20731 PFYYGECWI 9 38 589.2552540113401 NaN 0 589.2562255859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _PFYYGECWI_ ENST00000439441.1_1_19:35634180-35639646:+|nuORF 4.3292370932331545 0.2742679634796037 1 {I|L}{M(Oxidation (M))|F} 2 8 10.969 0 0 0.93235 0 0 131.09271336417538 782.2527559869749 913.3454693511503 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93235 - 4 + NaN NaN 88400 NaN 7862 2602 10456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10468 50.509 NaN 452740 35 0 54389 0.327 + 20309 NYQGHFHLF 9 80 581.775081217829 1161.5356095024579 2 581.7750854492188 MULTI HCD FTMS 0 0 0 10467 249102.34375 0.781019442607878 2 -0.04969024658203125 1 Unmodified _NYQGHFHLF_ ENST00000283632.4_1_2:86968058-86968091:+|nuORF 131.29775728308752 0.0005262696486345744 1 [YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F} 9 0 + 86.154 0 0 7.4173 7.4173 85.958 0 0 0 0.6234684152074976 0.6234684152074976 0.6234684152074976 0.6234684152074976 0 2.517220322351953 2 0 1.341129063296272 + + [YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NYQGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YN][AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NY[AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[MT][{I|L}P]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[WK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{[HG]|PP}Q[YN]{M(Oxidation (M))|F} 7.4173;7.3636;6.6245;6.2908;0.8742;0.46019;0.052335 +;+;-;-;-;-;- + 404 NaN NaN 159666.3 NaN 7863 2603 10467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10469 50.513 NaN 498100 35 0 45195 0.261 + 4529 EYLERAPEL 9 72 560.288480423293 1118.5624079133859 2 560.2884521484375 MULTI HCD FTMS 0 0 0 10467 169105.953125 0.4753906667630674 3 -0.06937408447265625 2 Unmodified _EYLERAPEL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 79.59630418116434 0.005983006570063981 1 [YE]{I|L}ERA 6 3 48.887 0 0 4.3706 0 0 0 354.16697085217123 354.16697085217123 -2.5843323606878243 0 -2.5843323606878243 0 0 1.086696871556164 1.3010299956639813 0.2614393726401688 0 + [YE]{I|L}ERA 4.3706 + + 702 + NaN NaN 160744.3 NaN 7864 2603 10467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10470 50.517 NaN 297470 35 0 44107 0.261 -1 TLTHDQMID 9 66 545.2475083166725 1088.4804637001448 2 546.2321166992188 MULTI HCD FTMS 0 0 0 10467 13313.3603515625 0.48145415893430343 -2 0.05925750732421875 3 Oxidation (M) _TLTHDQM(Oxidation (M))ID_ ENSG00000105738|ENST00000222345|SIPA1L3;ENST00000601881.1_1_19:38610303-38621413:+|nuORF 7.910154910731844 0.2910521888787154 1 MARCSEV{M(Oxidation (M))|F} 8 -1 37.305 0 0 3.4273 0 0 147.1369100886198 0 147.1369100886198 0 8.711375162600703 0 0 0 0 0 0.4247425010840047 0 MARCSEV{M(Oxidation (M))|F} 3.4273 - 609 + NaN NaN 144814.1 NaN 7865 2603 10467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10472 50.522 NaN 1706900 35 0 216210 0.326 + 35836 YYQHIVTTL 9 115 569.3004935295705 1136.586434125941 2 569.300537109375 MULTI HCD FTMS 0 0 0 10471 913612.4375 0.8933219689580708 1 -0.03670501708984375 1 Unmodified _YYQHIVTTL_ ENSG00000116005|ENST00000433351|PCYOX1;nc|ENSG00000116005|Q9UHG3-2|PCYOX1 122.17920374332846 0.0010792739174387011 1 YYQH{I|L}VTT{I|L} 9 0 + 90.06 0 0 7.9237 7.9237 91.317 0 0 0 17.205452212310348 48.70629071651592 17.205452212310348 9.208187539523749 0 2.6989700043360187 1.3979400086720375 0.9247425010840047 0 + + YYQH{I|L}VTT{I|L};YY[AG]H{I|L}VTT{I|L};[YQ]YH{I|L}VTT{I|L};{I|L}HY[YQ]VTT{I|L};N[W{I|L}][YQ]VTT{I|L};[{I|L}T]G{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TT{I|L};[{I|L}T]G{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TT{I|L};{[DS]|[MA]|[CV]|TT}{I|L}[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TT{I|L};[{I|L}T][WQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TT{I|L};{I|L}HV[YQ]YTT{I|L} 7.9237;7.1135;5.9855;5.274;4.104;3.8729;3.7552;3.6541;3.6002;3.4289 +;-;-;-;-;-;-;-;-;- + 5496 NaN NaN 349540.7 NaN 7866 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10473 50.526 NaN 2670800 35 0 617320 0.261 + 24375 RYIPTAAAF 9 87 505.276884993559 1008.539217053918 2 505.27691650390625 MULTI HCD FTMS 0 0 0 10471 1294304.375 0.1798300470775771 -4 0.09849166870117188 2 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 78.7280429016045 0.006263961847259105 1 [YR]{I|L}[TP]AAA{M(Oxidation (M))|F} 9 0 + 72.43 0 0 7.1817 7.1817 87.581 0 0 0 2.922152515121226 51.65832888017434 2.922152515121226 5.017568325480582 0 2.805462187404089 0 1.0941876774005248 0 + + [YR]{I|L}[TP]AAA{M(Oxidation (M))|F};[Y{I|L}]R[TP]AAA{M(Oxidation (M))|F};[HV][VP][TP]AAA{M(Oxidation (M))|F};[YR]{I|L}[SG][VP]A{M(Oxidation (M))|F};[YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VP]A{M(Oxidation (M))|F};[Y{I|L}]R[SG][VP]A{M(Oxidation (M))|F};[YR]{I|L}[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[YR]{I|L}[SG][PG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]R[SG]{I|L}[PG]{M(Oxidation (M))|F} 7.1817;6.6841;5.9304;4.1773;4.0307;3.6798;3.3731;2.8258;2.4998;2.4125 +;-;-;-;-;-;-;-;-;- + 828 NaN NaN 490406.6 NaN 7867 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10474 50.53 NaN 840170 35 0 80767 0.261 + 23129 RFEEAHFTF 9 77 592.2802198861511 1182.5458868391022 2 592.2803955078125 MULTI HCD FTMS 0 0 0 10471 308075.21875 0.20476195836903052 9 -0.2601814270019531 3 Unmodified _RFEEAHFTF_ ENSG00000131788|ENST00000393045|PIAS3;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENST00000498436.2_1_1:145578572-145580415:+|nuORF 59.368380827593164 0.01846506874148156 1 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 69.319 0 0 5.8619 5.8619 91.671 0 0 0 4.762036441594191 30.203037561203836 4.762036441594191 30.49288071920715 0 1.6989700043360187 0 0.4247425010840047 0 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAERE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAER{M(Oxidation (M))|F}E;{[{M(Oxidation (M))|F}H]|[RQ]}AT{M(Oxidation (M))|F}ERE{M(Oxidation (M))|F};[HA]{M(Oxidation (M))|F}T{M(Oxidation (M))|F}ERE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][HA]{M(Oxidation (M))|F}ERE{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}AT{[RE]|[WV]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HA]{M(Oxidation (M))|F}T{[RE]|[WV]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}AT{M(Oxidation (M))|F}ER{M(Oxidation (M))|F}E;[{M(Oxidation (M))|F}T][HA]{[RE]|[WV]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.8619;3.2833;2.6889;2.481;2.2754;2.1578;2.1191;1.9136;1.8866;1.7959 -;-;-;-;-;-;-;-;-;- 717 NaN NaN 209574.6 NaN 7868 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10475 50.533 NaN 247120 35 0 91320 0.264 -1 PLMMSLVFYF 10 40 421.8765733280575 1262.6078905843724 3 421.8771057128906 MULTI HCD FTMS 0 0 0 10471 66233.0859375 0.0855279718834889 23 -0.6746673583984375 4 Oxidation (M) _PLM(Oxidation (M))MSLVFYF_ ENST00000421505.1_1_1:178062135-178062847:-|nuORF 6.1918466704503565 0.44252927588099017 1 Y{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.4528 0 0 934.4655088478474 0 934.4655088478474 0 26.989700043360187 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F} 2.4528 + + 8 + NaN NaN 128429 NaN 7869 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10476 50.537 NaN 330010 35 0 50494 0.261 + 15775 LPGHGTSPLL 10 55 496.28220325732343 990.5498535814469 2 496.2716064453125 MULTI HCD FTMS 0 0 0 10471 56868.74609375 0.7111219690709987 2 -0.05638885498046875 5 Unmodified _LPGHGTSPLL_ REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF 15.847184025352803 0.36288280428275715 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 22.703 0 0 2.292 0 0 599.286912986525 0 599.286912986525 0 5.713337517843655 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.292 - 84 NaN NaN 129716.7 NaN 7870 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10477 50.54 NaN 232550 35 0 27033 0.261 + 21668 PYVADRQGF 9 73 526.7612969054219 NaN 0 526.7797241210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _PYVADRQGF_ ENSG00000148154|ENST00000374279|UGCG 10.823927491677226 0.2427956001690155 1 PA 2 7 16.86 0 0 1.6035 0 0 718.3391280376386 162.0559023492797 880.3950303869183 0 0 0 0 0 0.7396518287104438 0 0 0 PA 1.6035 - 50 + NaN NaN 118581.6 NaN 7871 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10478 50.544 NaN 151060 35 0 22326 0.261 -1 YYASAFSMM 9 49 551.7144832575425 1101.414413581885 2 551.714599609375 MULTI HCD FTMS 0 0 0 10471 21001.57421875 0.5016068221624557 -4 0.09849166870117188 7 2 Oxidation (M) _YYASAFSM(Oxidation (M))M(Oxidation (M))_ ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST 16.942295170755138 0.21397866736869717 1 ES{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 15.534 0 0 1.4104 0 0 573.2470074312974 0 573.2470074312974 0 6.070006276765483 0 0 0 0.7742275032520141 0 0 0 ES{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4104 - 20 + NaN NaN 121290.3 NaN 7872 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10479 50.547 NaN 77391 35 0 4956.2 0.261 + 30233 VIQDPFQQ 8 48 487.7498420636011 973.4851311940022 2 487.7498474121094 MULTI HCD FTMS 0 0 0 10471 32406.013671875 0.2608555665902206 6 -0.17470550537109375 8 Unmodified _VIQDPFQQ_ REV__ENSG00000162694|ENST00000370114|EXTL2 7.289230182591677 0.5311777711368266 1 [{I|L}V]Q 3 -1 12.447 0 0 1.2786 0 0 0 630.2510112025058 630.2510112025058 12.447274948966937 0 0 0 0 0.3494850021680094 0 0 0 [{I|L}V]Q 1.2786 + + 8 + NaN NaN 99634 NaN 7873 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10480 50.55 NaN 40367 35 0 4378.6 0.261 + -1 CWMSEMWIM 9 32 616.7356818428615 1231.4568107525229 2 616.7350463867188 MULTI HCD FTMS 0 0 0 10471 24264.15234375 0.36984368095152526 8 -0.22388076782226562 9 Oxidation (M) _CWMSEMWIM(Oxidation (M))_ REV__ENST00000389600.6_1_13:51590304-51594849:-|nuORF;REV__nc|ENSG00000293412|O75343|GUCY1B2 1.844237919475145 0.33703635659052655 1 YQ{I|L}{M(Oxidation (M))|F} 4 -1 29.412 0 0 2.3884 0 0 662.2049427716812 0 662.2049427716812 0 29.412450368561593 0 0 0 0.5 0 0 0 YQ{I|L}{M(Oxidation (M))|F} 2.3884 - 10 NaN NaN 93401.4 NaN 7874 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10481 50.554 NaN 86824 35 0 8395.5 0.264 + 26353 SSIDSEPAL 9 46 459.724343096957 917.434133260714 2 459.7244873046875 MULTI HCD FTMS 0 0 0 10471 27647.224609375 0.04605639431875245 12 -0.34903717041015625 10 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 14.838274106304384 0.23215694253501695 1 SE[PA]{I|L} 5 4 19.297 0 0 2.1033 0 0 402.17589003730626 0 402.17589003730626 0 15.31743128760553 0 0 0 1 0 0 0 + SE[PA]{I|L} 2.1033 + + 17 NaN NaN 96494.1 NaN 7875 2604 10471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10483 50.559 NaN 194810 35 0 44061 0.327 + -1 RIMKMRRL 8 62 568.33359558143 NaN 0 568.322265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _RIM(Oxidation (M))KM(Oxidation (M))RRL_ REV__ENST00000409592.7_1_2:225738717-225738747:-|nuORF 8.593279151180031 0.38822285293237185 1 GW 2 -1 7.4743 0 0 0.65873 0 0 230.21374770407243 658.3327730768186 888.5465207808911 0 0 0 0 0 0 0 0 0 GW 0.65873 - 29 + NaN NaN 125254.3 NaN 7876 2605 10482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10484 50.563 NaN 117490 35 0 17647 0.262 + 30604 VPAWDHTL 8 35 469.7401766241481 937.4658003150962 2 469.7400817871094 MULTI HCD FTMS 0 0 0 10482 68632.015625 0.5870084991264597 6 -0.16090774536132812 2 Unmodified _VPAWDHTL_ ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3 44.40701690623563 0.17431628565839993 1 VPA 3 5 44.922 0 0 4.7918 0 0 0 667.2821749322874 667.2821749322874 23.46787486224656 0 0 0 0 0.5 1.5228787452803376 0 0 + VPA 4.7918 + + 13 + NaN NaN 104981.1 NaN 7877 2605 10482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10485 50.567 NaN 58708 35 0 10807 0.261 + -1 MVVPDAAELH 10 39 549.2679318371834 1096.5213107411666 2 549.2674560546875 MULTI HCD FTMS 0 0 0 10482 53220.92578125 0.5401751961088043 -11 0.306365966796875 3 Oxidation (M) _M(Oxidation (M))VVPDAAELH_ REV__ENSG00000105953|ENST00000222673|OGDH;REV__nc|ENSG00000105953|Q02218-2|OGDH;REV__nc|ENSG00000105953|Q02218-3|OGDH;REV__OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant 1.6526216038709556 0.46655611578153744 1 E 1 -1 1.5938 0 0 0.14535 0 0 796.3880537605011 168.06330286197502 964.451356622476 0 0 0 0 0 0 0 0 0 E 0.14535 + + 2 + NaN NaN 91780.3 NaN 7878 2605 10482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10486 50.57 NaN 221080 35 0 29432 0.263 + 4790 EYVEKFYRI 9 64 416.22019191672985 1245.6387463503895 3 416.22015380859375 MULTI HCD FTMS 0 0 0 10482 35599.5078125 0.01363602450477277 62 -1.7958717346191406 4 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 3.5870582119611467 0.32382448100160255 1 EV[C(Carbamidomethyl (C))N] 4 7 16.198 0 0 1.3004 0 0 725.4224116123268 0 725.4224116123268 0 2.2184874961635614 0 0 0 0 0 0 0 EV[C(Carbamidomethyl (C))N] 1.3004 - 55 NaN NaN 119009.7 NaN 7879 2605 10482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10487 50.573 NaN 57245 35 0 6721.4 0.261 -1 MTYRFCSQF 9 32 628.2658972123535 1254.5172414915069 2 628.2640380859375 MULTI HCD FTMS 0 0 0 10482 29601.599609375 0.5097064382474407 -3 0.0859375 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))TYRFC(Carbamidomethyl (C))SQF_ ENSG00000155511|ENST00000285900|GRIA1;ENST00000481559.6_1_5:152869375-153085697:+|nuORF;nc|ENSG00000155511|P42261-2|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1 1.4819007175156935 0.3397831423917744 1 QNT{M(Oxidation (M))|F} 4 -1 31.938 0 0 2.5459 0 0 746.2824574201187 0 746.2824574201187 0 31.938200260161125 0 0 0 0 0 0 0 QNT{M(Oxidation (M))|F} 2.5459 - 8 NaN NaN 97504.3 NaN 7880 2605 10482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10489 50.578 NaN 1565200 35 0 306170 0.327 + 21197 PQKTSESTF 9 102 512.751023541715 1023.48749415023 2 513.7680053710938 MULTI HCD FTMS 0 0 0 10488 28129.873046875 0.09363452117619953 11 -0.3255729675292969 1 Unmodified _PQKTSESTF_ REV__ENSG00000070501|ENST00000265421|POLB 24.020572477871973 0.15282392193088168 1 EHS{I|L}CVS 7 -1 52.324 0 0 5.1123 0 0 0 265.1304110162719 265.1304110162719 16.21675043415849 0 0 0 0 0.2742275032520141 0 1.5381068352144718 0 EHS{I|L}CVS 5.1123 - 2632 + NaN NaN 330409.8 NaN 7881 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10490 50.583 NaN 593720 35 0 159500 0.261 + -1 LESMYEAELL 10 60 607.2873269184316 1212.5601009036632 2 607.3067016601562 MULTI HCD FTMS 0 0 0 10488 22974.0234375 0.5902637863454548 -10 0.2667655944824219 2 Oxidation (M) _LESM(Oxidation (M))YEAELL_ REV__ENSG00000174791|ENST00000311320|RIN1;REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF;REV__nc|ENSG00000174791|Q13671-2|RIN1 10.073929032068715 0.4168838835836452 1 ME{I|L}AA 5 -1 42.206 0 0 3.4808 0 0 0 694.2807711236936 694.2807711236936 18.738350322034236 0 0 0 0 0 0 0.4247425010840047 0 ME{I|L}AA 3.4808 - 203 + NaN NaN 175446.1 NaN 7882 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10491 50.586 NaN 144270 35 0 13635 0.264 + 10863 IVQGPDPNL 9 44 476.75864355715464 951.5027341811093 2 476.75823974609375 MULTI HCD FTMS 0 0 0 10488 86374.0234375 0.13388248133737518 8 -0.23337173461914062 3 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 43.77239144664712 0.04802738721622131 1 [{I|L}V]Q 3 6 36.695 0 0 3.8565 0 0 0 608.2695673266945 608.2695673266945 28.809290282914045 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + [{I|L}V]Q 3.8565 + + 29 NaN NaN 106478.5 NaN 7883 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10492 50.59 NaN 225750 35 0 20341 0.261 + -1 FDTDEMEQL 9 69 572.229062123446 1142.443571313692 2 572.2294311523438 MULTI HCD FTMS 0 0 0 10488 56341.78125 0.6298749874557742 -1 0.019683837890625 4 Oxidation (M) _FDTDEM(Oxidation (M))EQL_ REV__ENST00000404589.7_1_3:58487368-58487425:+|nuORF 30.636539890814138 0.10832830463492794 1 EQ{I|L} 3 -1 39.253 0 0 3.4358 0 0 754.2490177684487 0 754.2490177684487 0 20.223703006718594 0 0 0 0.9247425010840047 0 0.3807196863200844 0 EQ{I|L} 3.4358 + + 392 NaN NaN 113253.3 NaN 7884 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10493 50.593 NaN 402470 35 0 40243 0.261 + 8051 GHIDINEFL 9 79 529.2715849191117 1056.5286169050232 2 529.2620239257812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _GHIDINEFL_ ENSG00000156194|ENST00000286719|PPEF2 24.020572477871973 0.15282392193088168 1 SD{M(Oxidation (M))|F} 3 7 42.505 0 0 4.0231 0 0 689.3908802958211 0 689.3908802958211 0 10.778324880759484 0 0 0 1.25 0 0.3807196863200844 0 SD{M(Oxidation (M))|F} 4.0231 - 363 + NaN NaN 146292.9 NaN 7885 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10494 50.596 NaN 158920 35 0 11973 0.261 + -1 YAMCLMTLF 9 44 554.7465731359749 1107.4785933387498 2 555.2584838867188 MULTI HCD FTMS 0 0 0 10488 6095.7890625 0.2925221757457078 -2 0.05638885498046875 6 Oxidation (M) _YAM(Oxidation (M))CLMTLF_ REV__ENSG00000196420|ENST00000368717|S100A5;REV__nc|ENSG00000196420|P33763-2|S100A5 5.230669730166228 0.3113646817964458 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T 8 -1 14.587 0 0 1.3172 0 0 0 161.03227790086467 161.03227790086467 2.267893859649419 0 0 0 0 0 2 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T 1.3172 - 35 NaN NaN 106295.9 NaN 7886 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10495 50.6 NaN 312010 35 0 28755 0.261 -1 HYMPPPYASL 10 66 596.279056213023 1190.5435594928458 2 596.293701171875 MULTI HCD FTMS 0 0 0 10488 53694.00390625 0.6972870883998551 2 -0.059177398681640625 7 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant 32.30548876998284 0.21217886106551395 1 {[WN]|[YH]}{M(Oxidation (M))|F}[RP][NS]AS 9 -1 32.883 0 0 2.762 0 0 0 128.0659057424074 128.0659057424074 14.198559138057767 0 0 0 0 1.2302046884880937 1.5228787452803376 0 0 {[WN]|[YH]}{M(Oxidation (M))|F}[RP][NS]AS 2.762 - 154 NaN NaN 130870.8 NaN 7887 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10496 50.603 NaN 93172 35 0 6251.8 0.261 + 34467 YPFDGHNEGTL 11 50 625.278154038792 1248.5417551443838 2 625.2781372070312 MULTI HCD FTMS 0 0 0 10488 56067.66015625 0.6746546567380479 -1 0.019683837890625 8 Unmodified _YPFDGHNEGTL_ ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L 42.312485326615175 0.12205692784641806 1 YP{M(Oxidation (M))|F}D 4 7 58.136 0 0 4.6563 0 0 0 723.3099459283811 723.3099459283811 46.70941280735775 0 0 0 0 0.4247425010840047 2 1.274227503252014 0 + YP{M(Oxidation (M))|F}D 4.6563 + + 50 + NaN NaN 114338.2 NaN 7888 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10497 50.606 NaN 114280 35 0 12700 0.261 -1 SYMLVNENRF 10 49 644.8032588578159 1287.5919647824317 2 644.8026733398438 MULTI HCD FTMS 0 0 0 10488 58944.66015625 0.45867022461715506 6 -0.16749191284179688 9 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 34.221707139014875 0.19555013683537745 1 ENV{I|L}[EC]{M(Oxidation (M))|F} 7 -1 46.955 0 0 3.6467 0 0 435.222459861525 0 435.222459861525 0 46.955094722265116 0 0 0 1.274227503252014 0 0 0.4247425010840047 ENV{I|L}[EC]{M(Oxidation (M))|F} 3.6467 - 109 NaN NaN 96773.7 NaN 7889 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10498 50.61 NaN 91468 35 0 9259.6 0.261 -1 DQEMLMKLMI 10 41 634.3082891441966 1266.602025355193 2 634.3088989257812 MULTI HCD FTMS 0 0 0 10488 29446 0.43665721853181405 5 -0.14122390747070312 10 Oxidation (M) _DQEMLMKLM(Oxidation (M))I_ ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 4.5288652416199255 0.4513317009562028 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 19.253 0 0 1.52 0 0 747.2961292951187 0 747.2961292951187 0 18.767959391884546 0 0 0 0.3054621874040891 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.52 + + 4 NaN NaN 86366.1 NaN 7890 2606 10488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10500 50.615 NaN 1551300 35 0 187200 0.327 + 18578 MVSDEYEQL 9 87 565.2396424612895 1128.4647319893788 2 565.23974609375 MULTI HCD FTMS 0 0 0 10499 1102363.75 0.9543443455413246 2 -0.05255126953125 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 1 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 73.976 0 0 6.5554 6.5554 88.938 0 0 0 4.774619429583851 41.03917193908117 4.774619429583851 9.208187539523749 0 2.2059771852360797 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}QY{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{M(Oxidation (M))|F}DSD{I|L};[Q{I|L}]EY{M(Oxidation (M))|F}DSD{I|L};[YE]Q{I|L}{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}[AG]Y{M(Oxidation (M))|F}DSD{I|L} 6.5554;5.7394;5.172;5.0129;4.9591;4.8315;4.7777;4.5042;4.322;4.1969 +;-;-;-;-;-;-;-;-;- + 1011 NaN NaN 343534 NaN 7891 2607 10499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10501 50.619 NaN 424280 35 0 65703 0.261 + 15972 LPQHEEICL 9 57 541.2709585487263 1080.5273641642525 2 541.2708129882812 MULTI HCD FTMS 0 0 0 10499 245705.390625 0.9870708407776201 -1 0.036251068115234375 2 Unmodified _LPQHEEICL_ ENSG00000143624|ENST00000318967|INTS3;ENST00000481797.5_1_1:153701080-153719633:+|nuORF;nc|ENSG00000143624|Q68E01|INTS3 43.77239144664712 0.04802738721622131 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}EE{I|L}C{I|L} 9 2 + 68.44 0 0 6.3339 6.3339 84.167 0 0 0 6.43175948177209 51.030768805449185 6.43175948177209 1.2371250542002343 0 0.805462187404089 0 1.4802046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}EE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}EEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}EE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]EE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}EEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RD]VE{I|L}C{I|L} 6.3339;6.2195;6.2171;6.1026;5.9827;5.8659;5.4818;5.3673;5.3649;5.2714 -;-;-;-;-;-;-;-;-;- 762 NaN NaN 145855.5 NaN 7892 2607 10499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10502 50.623 NaN 288430 35 0 30158 0.261 + 21809 QAPYSRLL 8 53 474.26915968985134 946.5237664465027 2 474.26898193359375 MULTI HCD FTMS 0 0 0 10499 195987.40625 0.9154993919756256 1 -0.02292633056640625 3 Unmodified _QAPYSRLL_ REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF 28.486842064014134 0.3788298654084067 1 {I|L}{I|L} 2 -1 19.949 0 0 2.1076 0 0 702.3465294991478 0 702.3465294991478 0 5.344406447039063 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.1076 + + 46 NaN NaN 127408.1 NaN 7893 2607 10499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10503 50.626 NaN 243780 35 0 14757 0.261 + 34252 YPDRIMNTF 9 61 586.7737018509798 1171.5328507687595 2 586.77392578125 MULTI HCD FTMS 0 0 0 10499 95539.8515625 0.02386088576558217 84 -2.4096221923828125 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 40.72490554402381 0.06201705472789164 1 R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 6 3 51.063 0 0 4.3586 0 0 375.1439686505875 0 375.1439686505875 0 11.096981436199016 0 0 0 0.805462187404089 0 0 0.4247425010840047 + R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4.3586 + + 519 NaN NaN 123034.7 NaN 7894 2607 10499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10504 50.629 NaN 448820 35 0 196940 0.261 + 3841 EPIENNMIC 9 64 531.7326849530621 1061.450816972924 2 531.73291015625 MULTI HCD FTMS 0 0 0 10499 107034.359375 0.7386617369347205 -1 0.036251068115234375 5 Unmodified _EPIENNMIC_ REV__ENSG00000145868|ENST00000340253|FBXO38;REV__ENST00000503613.5_1_5:147774339-147777203:+|nuORF;REV__ENST00000508326.5_1_5:147774339-147782111:+|nuORF;REV__ENST00000509411.5_1_5:147774339-147778706:+|nuORF;REV__ENST00000511080.5_1_5:147774339-147795515:+|nuORF;REV__ENST00000521160.5_1_5:147774339-147778611:+|nuORF;REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38;REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38 3.944395688203298 0.32111559684428237 1 [Y{I|L}]E 3 -1 22.932 0 0 2.1604 0 0 0 653.2327438130209 653.2327438130209 18.95242492728684 0 0 0 0 0 2 0 0 [Y{I|L}]E 2.1604 - 24 NaN NaN 145152.2 NaN 7895 2607 10499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10505 50.633 NaN 145280 35 0 14496 0.261 + 24758 RYNILLNQL 9 60 573.8350666957131 1145.655580458226 2 573.8349609375 MULTI HCD FTMS 0 0 0 10499 73319.6015625 0.031140795454786777 33 -0.9669761657714844 6 Unmodified _RYNILLNQL_ REV__ENST00000507091.5_1_4:38627036-38627123:-|nuORF 20.453626601364224 0.18364154288633264 1 RY 2 -1 20.445 0 0 1.7846 0 0 0 823.4682741357459 823.4682741357459 3.165156422191796 0 0 0 0 0.4247425010840047 0 0 0 RY 1.7846 + + 61 + NaN NaN 105271.9 NaN 7896 2607 10499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10507 50.638 NaN 520310 35 0 48515 0.327 + 35319 YWMHVQNTF 9 80 621.2742868178269 1240.5340207024537 2 621.274169921875 MULTI HCD FTMS 0 0 0 10506 266612.46875 0.7659260541382196 -5 0.12855148315429688 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 131.26759243768294 0.0005280990274065272 1 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 82.251 0 0 6.6303 6.6303 89.106 0 0 0 8.478976728188329 8.478976728188329 8.478976728188329 9.208187539523749 0 2.0669015600442577 1.5228787452803376 0 0.7302046884880937 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQSQ{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQS[AG]{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]SQ{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]GGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]S[AG]{M(Oxidation (M))|F};[WY]{[QD]|[EN]|[WG]|[KD]|[RS]}[HM]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVAA[NS]{M(Oxidation (M))|F} 6.6303;5.888;5.888;5.5964;4.8541;4.8541;4.5606;3.773;3.4177;3.1777 +;-;-;-;-;-;-;-;-;- + 2486 NaN NaN 165489.7 NaN 7897 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10508 50.642 NaN 312080 35 0 42954 0.262 + 34653 YPSLREAAL 9 58 510.27973272332974 1018.5449125134595 2 510.2791748046875 MULTI HCD FTMS 0 0 0 10506 178665.21875 0.4956351704896798 -6 0.16479873657226562 2 Unmodified _YPSLREAAL_ chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4 43.981846655682396 0.04706587046877104 1 YPS{I|L} 4 5 61.063 0 0 5.9951 0 0 0 555.2896095869991 555.2896095869991 31.36984260976169 0 0 0 0 0.5 1.6989700043360187 0.7134679910804405 0 + YPS{I|L} 5.9951 + + 75 + NaN NaN 146597.9 NaN 7898 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10509 50.646 NaN 367300 35 0 64016 0.261 + 27274 SYPSAFSKL 9 50 500.26148627611514 998.5084196190303 2 500.2615661621094 MULTI HCD FTMS 0 0 0 10506 164220.96875 1 0 0 3 Unmodified _SYPSAFSKL_ ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1 31.26834338654808 0.10542797264966089 1 K{I|L} 2 7 17.691 0 0 1.7717 0 0 739.3218250959 0 739.3218250959 0 6.480625354554375 0 0 0 0.2742275032520141 0 0 0 + K{I|L} 1.7717 + + 106 NaN NaN 146597.6 NaN 7899 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10510 50.649 NaN 174370 35 0 27049 0.261 -1 VMYMQDYW 8 59 576.2304443514996 1150.4463357697991 2 576.2303466796875 MULTI HCD FTMS 0 0 0 10506 107488.796875 0.9186850297291687 4 -0.10831451416015625 4 Oxidation (M) _VM(Oxidation (M))YMQDYW_ ENSG00000211584|ENST00000442218|SLC48A1 14.581692164780916 0.48650662947107914 1 SD{I|L} 3 -1 30.322 0 0 2.6357 0 0 817.3058338849625 0 817.3058338849625 0 23.243923658886185 0 0 0 0.4247425010840047 0 0.28872548999643577 0 SD{I|L} 2.6357 - 90 NaN NaN 130118.8 NaN 7900 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10511 50.652 NaN 1220900 35 0 251550 0.264 + 33703 YLAARPGP 8 77 422.7373224694598 843.4600920057196 2 422.7373962402344 MULTI HCD FTMS 0 0 0 10506 96492.3046875 0.7017453899684906 -1 0.02292633056640625 5 Unmodified _YLAARPGP_ ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 24.67388899826682 0.4122521268485776 1 {I|L}YRAAA 6 6 64.602 0 0 7.6592 0 0 0 195.0768984430297 195.0768984430297 36.453650195120844 0 0 0 0 2.274227503252014 2 0 0 {I|L}YRAAA 7.6592 - 248 + NaN NaN 264084.2 NaN 7901 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10512 50.656 NaN 157530 35 0 15953 0.261 + 34357 YPEGFEIHSM 10 64 613.2633828160687 1224.5122126989372 2 613.2633056640625 MULTI HCD FTMS 0 0 0 10506 111167.9375 0.32716000617648466 18 -0.5261650085449219 6 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 92.65332237495696 0.000798763162112469 1 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 97.622 0 0 7.9723 7.9723 95.111 0 0 0 74.43463337597214 14.13664226604736 14.13664226604736 27.37334396171555 0 1.9291746928241125 1.5228787452803376 1.3996498648046138 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YPE{I|L}Q[YE]{[{M(Oxidation (M))|F}H]|[RQ]};YP{M(Oxidation (M))|F}{[DA]|[EG]}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[ET]|[MV]}C[HS]{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]C{[ET]|[MV]}E{I|L}{M(Oxidation (M))|F} 7.9723;5.7369;5.3314;4.0078;3.4743;3.0959;2.5579;2.5251;1.987 +;-;-;-;-;-;-;-;- + 488 + NaN NaN 103385.4 NaN 7902 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10513 50.659 NaN 153480 35 0 30468 0.262 + 15642 LPEFEKSSL 9 51 525.27885639409 1048.5431598549799 2 525.2785034179688 MULTI HCD FTMS 0 0 0 10506 57655.24609375 0.8804974706434586 1 -0.02962493896484375 7 Unmodified _LPEFEKSSL_ ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant 57.24910588100465 0.021429789259086996 1 {I|L}PE{M(Oxidation (M))|F}E 5 4 78.513 0 0 7.4879 0 0 0 430.22944055728755 430.22944055728755 69.5609971201948 0 0 0 0 1.6747425010840047 2 0.7302046884880937 0 + {I|L}PE{M(Oxidation (M))|F}E 7.4879 + + 71 + NaN NaN 122980.2 NaN 7903 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10514 50.662 NaN 194550 35 0 96557 0.261 + 16053 LPSKAKNF 8 42 452.76603211879404 903.5175113043881 2 452.7662048339844 MULTI HCD FTMS 0 0 0 10506 51410.3828125 0.8075064328424015 1 -0.02962493896484375 8 Unmodified _LPSKAKNF_ REV__ENSG00000100038|ENST00000357179|TOP3B;REV__ENST00000457179.5_1_22:22311488-22316996:-|nuORF;REV__ENST00000457270.5_1_22:22311488-22312070:-|nuORF 36.04419817259434 0.28174663821216267 1 {I|L}PS 3 -1 55.758 0 0 6.1712 0 0 0 603.3260685803509 603.3260685803509 37.341284356197235 0 0 0 0 0.8807196863200843 1.3010299956639813 0.7742275032520141 0 {I|L}PS 6.1712 + + 44 + NaN NaN 124422.4 NaN 7904 2608 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10516 50.667 NaN 9888200 35 0 2486800 0.327 + 24376 RYIPTAAAF 9 77 505.276884993559 1008.539217053918 2 505.2773132324219 MULTI HCD FTMS 0 0 0 10515 6960641.5 0.9671082882920309 1 -0.029514312744140625 1 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 96.11092074494114 0.00436583732602279 1 [Y{I|L}]RPTAAA{M(Oxidation (M))|F} 9 2 + 95.639 0 0 9.483 9.483 94.213 0 0 0 9.286210186292791 14.018637558036673 9.286210186292791 9.286210186292791 0 2.5 1.154901959985743 1.6237125054200234 0 [Y{I|L}]RPTAAA{M(Oxidation (M))|F};[YR]{I|L}PTAAA{M(Oxidation (M))|F};[Y{I|L}]RPTAA{M(Oxidation (M))|F}A;[YR]{I|L}PTAA{M(Oxidation (M))|F}A;[HV][VP]PTAAA{M(Oxidation (M))|F};[Y{I|L}]RPT{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[SG][VP]A{M(Oxidation (M))|F};[YR]{I|L}PT{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[SG]{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}[SG][VP]A{M(Oxidation (M))|F} 9.483;8.5622;8.093;7.1722;6.2626;5.4461;5.2993;4.5254;4.4829;4.3785 -;+;-;-;-;-;-;-;-;- + 769 NaN NaN 760332.9 NaN 7905 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10517 50.672 NaN 495910 35 0 59400 0.261 + 35837 YYQHIVTTL 9 82 569.3004935295705 1136.586434125941 2 569.300537109375 MULTI HCD FTMS 0 0 0 10515 198041.390625 0.1936430785601246 6 -0.17757415771484375 2 Unmodified _YYQHIVTTL_ ENSG00000116005|ENST00000433351|PCYOX1;nc|ENSG00000116005|Q9UHG3-2|PCYOX1 78.7280429016045 0.006263961847259105 1 YYQ[H{I|L}]VTT{I|L} 9 0 + 63.879 0 0 5.6203 5.6203 88.168 0 0 0 40.920234257298276 11.127042801912879 11.127042801912879 9.559771852360797 0 2.1989700043360187 1.3979400086720375 0.7742275032520141 0.3054621874040891 + + YYQ[H{I|L}]VTT{I|L};N[W{I|L}]QYVTT{I|L};YY[AG][H{I|L}]VTT{I|L};N[W{I|L}][AG]YVTT{I|L};{[QN]|[E{I|L}]|[KN]}[W{I|L}][YV]TT{I|L};[{I|L}T]G{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TT{I|L};[{I|L}T][WQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYQ[PG]Q{I|L};YY[R{I|L}][EP]{I|L}[PS];YY[KS]N[{I|L}P]P[VG] 5.6203;4.7792;4.5413;3.969;3.7444;2.4045;2.2496;1.6134;1.5111;1.5072 +;-;-;-;-;-;-;-;-;- + 1144 + NaN NaN 171568.1 NaN 7906 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10518 50.675 NaN 779850 35 0 78580 0.261 + 17118 LYLKVKGNVF 10 82 590.8581647149076 1179.7017764966151 2 590.8582763671875 MULTI HCD FTMS 0 0 0 10515 443390.65625 0.9168072069305799 -1 0.02962493896484375 3 Unmodified _LYLKVKGNVF_ ENSG00000108298|ENST00000225430|RPL19;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF 99.79894945604345 0.00025031564603709316 1 {I|L}Y{I|L}KVN 6 4 80.623 0 0 6.8342 0 0 0 446.23911462955317 446.23911462955317 12.080685494517326 0 0 0 0 1.305462187404089 2 0 0.7302046884880937 {I|L}Y{I|L}KVN 6.8342 - 597 + NaN NaN 201137.3 NaN 7907 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10519 50.678 NaN 496070 35 0 78352 0.261 + 28144 TIQDKLSVQ 9 88 516.2899163252139 1030.5652797172277 2 516.7894287109375 MULTI HCD FTMS 0 0 0 10515 138741.015625 0.508487189301653 -4 0.10848617553710938 4 Unmodified _TIQDKLSVQ_ REV__CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;REV__ENSG00000183765|ENST00000404276|CHEK2;REV__nc|ENSG00000183765|O96017-11|CHEK2;REV__nc|ENSG00000183765|O96017-12|CHEK2;REV__nc|ENSG00000183765|O96017-13|CHEK2;REV__nc|ENSG00000183765|O96017-4|CHEK2;REV__nc|ENSG00000183765|O96017-9|CHEK2 18.1463463914782 0.20357593197100715 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QN]|[E{I|L}]|[KN]}DVT 8 -1 28.853 0 0 2.7998 0 0 0 127.07227485729051 127.07227485729051 7.959500665946084 0 0 0 0 0 1.3979400086720375 0.5044321917401079 0.3252574989159953 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QN]|[E{I|L}]|[KN]}DVT 2.7998 - 893 NaN NaN 156530.3 NaN 7908 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10520 50.682 NaN 265860 35 0 48684 0.261 + 15552 LPDQDEMDL 9 56 546.231699562772 1090.4488461923438 2 546.2316284179688 MULTI HCD FTMS 0 0 0 10515 144074.953125 1 0 0 5 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 40.23920728925047 0.06424668180817725 1 QDE{M(Oxidation (M))|F}D{I|L} 6 3 53.167 0 0 4.8757 0 0 325.1638355939469 0 325.1638355939469 0 32.19782205064881 0 0 0 1.4247425010840047 0 0.3807196863200844 0.3252574989159953 + QDE{M(Oxidation (M))|F}D{I|L} 4.8757 + + 218 NaN NaN 127884.8 NaN 7909 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10521 50.685 NaN 181170 35 0 13401 0.261 + 20310 NYQGHFHLF 9 58 581.775081217829 1161.5356095024579 2 581.7747802734375 MULTI HCD FTMS 0 0 0 10515 61932.59375 0.19417946504120417 8 -0.2367706298828125 6 Unmodified _NYQGHFHLF_ ENST00000283632.4_1_2:86968058-86968091:+|nuORF 53.57557251787612 0.02656881086235134 1 NYQGH{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{M(Oxidation (M))|F} 9 0 + 46.084 0 0 3.9675 3.9675 84.73 0 0 0 15.66106476267414 5.206896739454621 5.206896739454621 9.208187539523749 0 0.7302046884880937 1.6989700043360187 0 0.3252574989159953 + + NYQGH{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{M(Oxidation (M))|F};NY[AG]GH{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{M(Oxidation (M))|F} 3.9675;3.1747 +;- + 103 + NaN NaN 132534.4 NaN 7910 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10522 50.688 NaN 442220 35 0 67047 0.261 + 19205 NIIREEAVL 9 79 528.8059218289683 1055.5972907247365 2 528.8060913085938 MULTI HCD FTMS 0 0 0 10515 140640.125 0.9600314685803227 -2 0.05255126953125 7 Unmodified _NIIREEAVL_ ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1 36.506200033944 0.08138327636155518 1 AV{I|L} 3 6 33.94 0 0 3.2153 0 0 754.3970530547588 0 754.3970530547588 0 2.5134875797167666 0 0 0 0.9247425010840047 0 0 0 + AV{I|L} 3.2153 + + 527 NaN NaN 170256.4 NaN 7911 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10523 50.692 NaN 258060 35 0 21226 0.261 + 9742 HYAYSFKYL 9 56 596.2952838443249 1190.5760147554497 2 596.7976684570312 MULTI HCD FTMS 0 0 0 10515 66440.0390625 0.8225227406176364 -1 0.02962493896484375 8 Unmodified _HYAYSFKYL_ ENSG00000109111|ENST00000314616|SUPT6H 39.94969957227396 0.06557568441294001 1 {[WN]|[YH]}{M(Oxidation (M))|F}PRVPY 8 6 45.839 0 0 3.8502 0 0 0 128.09638724521656 128.09638724521656 34.14442544444192 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 {[WN]|[YH]}{M(Oxidation (M))|F}PRVPY 3.8502 - 262 NaN NaN 141811 NaN 7912 2609 10515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10525 50.697 NaN 632510 35 0 78550 0.326 + 13018 KYITDVVKL 9 96 539.8289299874173 1077.6433070416344 2 539.8290405273438 MULTI HCD FTMS 0 0 0 10524 380637.71875 0.5890044474636227 -2 0.059139251708984375 1 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 159.1008501968603 9.756703400391535E-09 1 [YK]{I|L}TDVVK{I|L} 9 0 + 86.097 0 0 7.9894 7.9894 87.065 0 0 0 1.2185530283986878 1.2185530283986878 1.2185530283986878 1.2185530283986878 0 2.7302046884880937 0 0.8556270500406937 1.9604093769761874 + + [YK]{I|L}TDVVK{I|L};KY{I|L}TDVVK{I|L};[YK]{I|L}TDVV{I|L}K;KY{I|L}TVDVK{I|L};{I|L}[YK]TDVVK{I|L};{I|L}[YK]TVDVK{I|L};{[QN]|[E{I|L}]|[KN]}[TA][Y{I|L}]KK{I|L};{[QN]|[E{I|L}]|[KN]}[TA][K{I|L}]YK{I|L};{[QN]|[E{I|L}]|[KN]}[TA][Y{I|L}]K{I|L}K;{[QN]|[E{I|L}]|[KN]}[TA][K{I|L}]Y{I|L}K 7.9894;7.8763;7.5205;6.6281;6.0232;4.775;1.3866;1.0451;0.91774;0.57628 +;+;-;-;-;-;-;-;-;- + 1018 NaN NaN 184214 NaN 7913 2610 10524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10526 50.701 NaN 560010 35 0 108970 0.261 + 14623 LFVKQTQQ 8 71 496.28220325732343 990.5498535814469 2 496.27203369140625 MULTI HCD FTMS 0 0 0 10524 16152.8427734375 0.20198513503717877 8 -0.24689102172851562 2 Unmodified _LFVKQTQQ_ REV__ENSG00000004487|ENST00000400181|KDM1A;REV__ENST00000481879.1_1_1:23376923-23381674:+|nuORF;REV__nc|ENSG00000004487|O60341|KDM1A 9.347437153973935 0.5250182646323369 1 {I|L}{M(Oxidation (M))|F}SHD{I|L}E 7 -1 29.714 0 0 2.9998 0 0 131.11614572311458 0 131.11614572311458 0 10.246907182741367 0 0 0 0.1861818737241735 0 1.110924374808178 0 {I|L}{M(Oxidation (M))|F}SHD{I|L}E 2.9998 - 135 + NaN NaN 166456.1 NaN 7914 2610 10524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10527 50.705 NaN 319740 35 0 54730 0.261 + 24852 RYQALFHDF 9 63 598.7962176577748 1195.5778823823496 2 598.79638671875 MULTI HCD FTMS 0 0 0 10524 99121.484375 0.7066839927724963 -2 0.059139251708984375 3 Unmodified _RYQALFHDF_ ENSG00000175073|ENST00000310421|VCPIP1 53.832793166522166 0.026208976789938845 1 A{I|L}{M(Oxidation (M))|F}HD{M(Oxidation (M))|F} 6 3 54.513 0 0 4.5596 0 0 447.22410781074376 0 447.22410781074376 0 28.839256468719157 0 0 0 1.6861818737241734 0 0 0 + A{I|L}{M(Oxidation (M))|F}HD{M(Oxidation (M))|F} 4.5596 + + 79 NaN NaN 147555.8 NaN 7915 2610 10524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10528 50.708 NaN 180900 35 0 32843 0.261 + 4530 EYLERAPEL 9 53 560.288480423293 1118.5624079133859 2 560.277099609375 MULTI HCD FTMS 0 0 0 10524 28113.154296875 0.07903170124428108 10 -0.2962074279785156 4 Unmodified _EYLERAPEL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 20.41453444215458 0.18397929046831515 1 A[WE]P{M(Oxidation (M))|F}{I|L} 6 6 29.169 0 0 2.6077 0 0 357.19063002754064 0 357.19063002754064 0 13.00521551055503 0 0 0 0.3494850021680094 0 0.4247425010840047 0 A[WE]P{M(Oxidation (M))|F}{I|L} 2.6077 - 121 NaN NaN 115609.4 NaN 7916 2610 10524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10529 50.711 NaN 54273 35 0 14383 0.261 + -1 DRMFYNEVI 9 27 601.7790637740396 1201.5435746148792 2 601.7791137695312 MULTI HCD FTMS 0 0 0 10524 29509.935546875 0.0927058336219598 45 -1.3089141845703125 5 Oxidation (M) _DRM(Oxidation (M))FYNEVI_ REV__ENSG00000130726|ENST00000253024|TRIM28 2.9952420565917617 0.3283108881486655 1 VE{I|L} 3 -1 26.198 0 0 2.1804 0 0 842.3402577130875 0 842.3402577130875 0 22.21848749616356 0 0 0 0 0 0 0 VE{I|L} 2.1804 - 11 NaN NaN 89652.9 NaN 7917 2610 10524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10530 50.715 NaN 119390 35 0 21772 0.261 + 9878 IAGPYDEEEL 10 47 568.261457088658 1134.5083612441158 2 568.2612915039062 MULTI HCD FTMS 0 0 0 10524 33071.73828125 0.10947930700129424 -14 0.3850822448730469 6 Unmodified _IAGPYDEEEL_ REV__ENSG00000004766|ENST00000305866|VPS50;REV__ENST00000441602.5_1_7:92883193-92979232:+|nuORF;REV__ENST00000471188.5_1_7:92887656-92969983:+|nuORF;REV__nc|ENSG00000004766|Q96JG6-2|VPS50;REV__nc|ENSG00000004766|Q96JG6-3|VPS50 10.073929032068715 0.4168838835836452 1 E{I|L} 2 -1 22.206 0 0 1.9573 0 0 874.3726063459 0 874.3726063459 0 16.721675119240516 0 0 0 0.4247425010840047 0 0 0 E{I|L} 1.9573 + + 25 NaN NaN 101027.7 NaN 7918 2610 10524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10532 50.72 NaN 2199200 35 0 469180 0.327 + 15479 LPDMVVSHL 9 103 513.7678488103783 1025.5211446875564 2 513.7678833007812 MULTI HCD FTMS 0 0 0 10531 1173073.5 0.8373207521817022 2 -0.06256866455078125 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 164.5152109175784 6.8106583686994766E-09 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 115.66 0 0 11.278 11.278 96.366 0 0 0 81.08575453971461 10.642492736872597 10.642492736872597 14.049471895720984 0 3.004432191740108 1.5228787452803376 1.5768323252109075 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}PD{M(Oxidation (M))|F}VV{I|L}[HS];[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L} 11.278;9.9078;9.5273;7.2613;7.1392;6.4316;6.355;6.006;5.9663;5.5408 +;-;+;-;-;-;-;-;-;- + 2268 + NaN NaN 416134.4 NaN 7919 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10533 50.724 NaN 164720 35 0 34680 0.261 -1 YANVACAQLGF 11 43 607.2873269184316 1212.5601009036632 2 607.306884765625 MULTI HCD FTMS 0 0 0 10531 18750.998046875 0.4817630283617868 -5 0.14122390747070312 2 Carbamidomethyl (C) _YANVAC(Carbamidomethyl (C))AQLGF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 8.155526934196011 0.3831532958467648 1 ME{I|L}A 4 -1 28.928 0 0 2.3857 0 0 0 765.3228853815061 765.3228853815061 14.222900387074516 0 0 0 0 0 0 0 0 ME{I|L}A 2.3857 - 22 + NaN NaN 113764.5 NaN 7920 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10534 50.728 NaN 99240 35 0 11701 0.261 + 2067 DEMSRTVLF 9 45 549.2679318371834 1096.5213107411666 2 549.2675170898438 MULTI HCD FTMS 0 0 0 10531 61406.58203125 0.6232569615086987 -5 0.14122390747070312 3 Unmodified _DEMSRTVLF_ REV__ENSG00000177971|ENST00000403490|IMP3 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4122 0 0 931.442726001712 0 931.442726001712 0 -4.436974992327126 -4.436974992327126 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4122 + + 33 + NaN NaN 106775.2 NaN 7921 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10535 50.731 NaN 60060 35 0 4995 0.261 + 24412 RYKLYQEMF 9 35 639.3208687032884 1276.6271844733767 2 639.3208618164062 MULTI HCD FTMS 0 0 0 10531 25271.396484375 0.5155674908045056 -1 0.022907257080078125 4 Unmodified _RYKLYQEMF_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 16.149105407346934 0.22083165093524068 1 [YR]K{I|L}YQEM{M(Oxidation (M))|F} 9 0 + 57.625 0 0 4.5138 4.5138 85.45 0 0 0 7.147642715192504 53.64516253185087 7.147642715192504 9.208187539523749 0 0 0 0 0 + + [YR]K{I|L}YQEM{M(Oxidation (M))|F};[YR]K{I|L}Y[AG]EM{M(Oxidation (M))|F} 4.5138;3.7925 +;- + 81 NaN NaN 96856.2 NaN 7922 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10536 50.734 NaN 113790 35 0 18623 0.264 + 535 APDKDYFL 8 42 484.7400835818392 967.4656142304784 2 484.7398681640625 MULTI HCD FTMS 0 0 0 10531 26120.759765625 0.5249102413205017 3 -0.0921478271484375 5 Unmodified _APDKDYFL_ DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF 9.38312468134398 0.524755689532147 1 {M(Oxidation (M))|F}{I|L} 2 6 22.519 0 0 2.3276 0 0 689.3027210919937 0 689.3027210919937 0 3.0546218740408904 0 0 0 0.3054621874040891 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.3276 + + 13 NaN NaN 103978.4 NaN 7923 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10537 50.738 NaN 67136 35 0 7990.1 0.261 + 59 ACAEQAPHF 9 36 487.2153861407277 NaN 0 487.2156066894531 PEAK HCD FTMS 0 0 0 10531 19921.248046875 0.8142126894251597 5 -0.15142440795898438 6 Unmodified _ACAEQAPHF_ ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-CASZ1|1|fusion;OBSCN-KRT17|1|fusion;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant 4.3292370932331545 0.2742679634796037 1 V 1 9 1.1092 0 0 0.11407 0 0 573.2222018695429 297.11103235416255 870.3332342237054 0 0 0 0 0 0 0 0 0 V 0.11407 - 3 + NaN NaN 99745.8 NaN 7924 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10538 50.741 NaN 106850 35 0 7770.5 0.261 + -1 RKKMCVQCRS 10 29 648.3300876057224 NaN 0 648.2407836914062 PEAK HCD FTMS 0 0 0 10531 5853.05419921875 0.35014563093750734 -2 0.05242156982421875 7 Carbamidomethyl (C) _RKKMC(Carbamidomethyl (C))VQCRS_ REV__ENSG00000169031|ENST00000396578|COL4A3 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102195.2 NaN 7925 2611 10531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10540 50.746 NaN 183340 35 0 28296 0.327 -1 MPSERCLSI 9 61 526.248412197325 1050.48227146145 2 526.2484130859375 MULTI HCD FTMS 0 0 0 10539 62683.05078125 0.6357431801918664 -2 0.049175262451171875 1 Oxidation (M) _M(Oxidation (M))PSERCLSI_ ENSG00000186231|ENST00000369261|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;nc|ENSG00000186231|Q96NJ5-3|KLHL32 13.042465956692817 0.2476723265019929 1 {M(Oxidation (M))|F}PS 3 -1 25.961 0 0 2.4713 0 0 0 716.3418427582651 716.3418427582651 17.008272069161734 0 0 0 0 0.8252574989159953 0 0.3807196863200844 0 {M(Oxidation (M))|F}PS 2.4713 + + 71 + NaN NaN 105449.1 NaN 7926 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10541 50.75 NaN 142050 35 0 10724 0.261 -1 AYPHNLMTF 9 45 555.2577483138126 1108.5009436944251 2 555.259033203125 MULTI HCD FTMS 0 0 0 10539 53748.2734375 0.03736565962110178 65 -1.8911514282226562 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 37.97399986684836 0.07464525285885698 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 26.427 0 0 2.384 0 0 695.3412342755875 0 695.3412342755875 0 22.931825014007217 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.384 + + 48 NaN NaN 104722.4 NaN 7927 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10542 50.754 NaN 130630 35 0 9005.3 0.261 + -1 CDFLNWGNTF 10 49 637.2689963875462 1272.5234398418922 2 637.2701416015625 MULTI HCD FTMS 0 0 0 10539 57004.90625 0.7998688924260163 -1 0.02626800537109375 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 10.799506525563784 0.4100970765206026 1 QNT{M(Oxidation (M))|F} 4 -1 43.686 0 0 3.433 0 0 764.2923451154312 0 764.2923451154312 0 43.68562527100117 0 0 0 0.75 0 0.4247425010840047 0 QNT{M(Oxidation (M))|F} 3.433 - 19 NaN NaN 120285.9 NaN 7928 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10543 50.757 NaN 97369 35 0 11214 0.261 -1 PSNCGKCKQSF 11 40 628.279570872319 NaN 0 628.2647705078125 PEAK HCD FTMS 0 0 0 10539 8240.1728515625 0.7820657943018139 -1 0.02626800537109375 4 Carbamidomethyl (C) _PSNCGKC(Carbamidomethyl (C))KQSF_ ENSG00000178386|ENST00000434772|ZNF223;ZNF223|p.N449Kfs*11|1|0.28|ENSG00000178386|chr19:44067167-44067168|-/A|frameshift_variant 4.189502756095605 0.3302357306631285 1 TNQC(Carbamidomethyl (C)) 4 -1 21.938 0 0 1.7487 0 0 165.1132549550378 583.2279757135374 748.3412306685752 0 0 0 0 0 0 0 0 0 TNQC(Carbamidomethyl (C)) 1.7487 - 30 + NaN NaN 99949.1 NaN 7929 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10544 50.761 NaN 254610 35 0 44962 0.262 -1 0 47 520.7664353640528 1039.5183177949054 2 521.2701416015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 22.123 0 0 2.1282 0 0 761.388509300568 0 761.388509300568 0 15.132965752203233 0 0 0 0.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F} 2.1282 - 13 + NaN NaN 129522.6 NaN 7930 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10545 50.764 NaN 132950 35 0 23350 0.261 -1 IPMEEKRGWYF 11 46 491.23947169486814 1470.6965856848044 3 491.2395935058594 MULTI HCD FTMS 0 0 0 10539 25076.25390625 0.4721620922489692 4 -0.12515640258789062 6 Oxidation (M) _IPM(Oxidation (M))EEKRGWYF_ ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 3.3557259375316324 0.404203592500566 1 {I|L}P 2 -1 19.464 0 0 1.3235 0 0 0 1257.537136520526 1257.537136520526 2.4742501084004687 0 0 0 0 0 0 0 0 {I|L}P 1.3235 + + 7 + NaN NaN 101437.4 NaN 7931 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10546 50.767 NaN 62362 35 0 5356.7 0.261 -1 SYMLVNENRF 10 45 644.8032588578159 1287.5919647824317 2 644.8026733398438 MULTI HCD FTMS 0 0 0 10539 15952.3603515625 0.12413122217058284 12 -0.3620796203613281 7 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 9.5439744041441 0.42184090036563754 1 QV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EC] 6 -1 13.913 0 0 1.0806 0 0 550.2655506818375 0 550.2655506818375 0 11.148977612681643 0 0 0 0.4247425010840047 0 0 0 QV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EC] 1.0806 - 9 NaN NaN 95729 NaN 7932 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10547 50.771 NaN 100740 35 0 6463.5 0.264 + 2422 DPSDLFWGPRW 11 48 459.2196136724167 1374.63701161745 3 459.2322692871094 MULTI HCD FTMS 0 0 0 10539 12405.2509765625 1 0 0 8 Unmodified _DPSDLFWGPRW_ REV__ENSG00000188389|ENST00000334409|PDCD1 2.2527281973983926 0.4090409658946738 1 [Y{I|L}]K 3 -1 24.437 0 0 1.7777 0 0 0 967.3641288872344 967.3641288872344 17.35863111416478 0 0 0 0 0 2 0 0 [Y{I|L}]K 1.7777 - 30 NaN NaN 95606.3 NaN 7933 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10548 50.774 NaN 295970 35 0 63225 0.261 + 10753 IRYELIARA 9 68 552.8299759521251 1103.64539897105 2 552.8303833007812 MULTI HCD FTMS 0 0 0 10539 41314.90234375 0.2034898441461554 -3 0.0786895751953125 9 Unmodified _IRYELIARA_ REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant;REV__ENSG00000142102|ENST00000409548|PGGHG;REV__ENST00000474221.5_1_11:291984-293434:+|nuORF;REV__ENST00000476372.1_1_11:291984-293434:+|nuORF 16.149105407346934 0.22083165093524068 1 {I|L}R 2 -1 21.281 0 0 1.9283 0 0 0 831.4372652643186 831.4372652643186 5.796896906561031 0 0 0 0 0 0 0 0.3807196863200844 {I|L}R 1.9283 + + 50 + NaN NaN 128632.9 NaN 7934 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10549 50.777 NaN 261710 35 0 28231 0.263 + 4791 EYVEKFYRI 9 69 416.22019191672985 1245.6387463503895 3 416.5543212890625 MULTI HCD FTMS 0 0 0 10539 18564.15625 0.009766863089148247 69 -1.9994392395019531 10 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 5.783430956126388 0.3071743400961265 1 {M(Oxidation (M))|F}KEV[C(Carbamidomethyl (C))N] 6 8 21.427 0 0 1.7201 0 0 450.25849537128187 0 450.25849537128187 0 6.822581265925436 0 0 0 0 0 0 0 {M(Oxidation (M))|F}KEV[C(Carbamidomethyl (C))N] 1.7201 - 59 NaN NaN 131271.6 NaN 7935 2612 10539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10551 50.782 NaN 646640 35 0 57440 0.327 + 35320 YWMHVQNTF 9 85 621.2742868178269 1240.5340207024537 2 621.2741088867188 MULTI HCD FTMS 0 0 0 10550 348091.65625 1 0 0 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 144.35026110057638 1.4798765981150827E-05 1 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 79.945 0 0 6.4444 6.4444 88.725 0 0 0 6.7062300641070465 6.7062300641070465 6.7062300641070465 9.208187539523749 0 2.079689690656103 1.5228787452803376 0 0.75 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQSQ{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQS[AG]{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]SQ{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]GGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}[VG][HA]NT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]S[AG]{M(Oxidation (M))|F} 6.4444;5.7021;5.7021;5.3945;4.6522;4.6522;4.3588;3.9955;3.8199;3.5711 +;-;-;-;-;-;-;-;-;- + 3699 NaN NaN 182077.4 NaN 7936 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10552 50.787 NaN 417140 35 0 51454 0.261 + 18579 MVSDEYEQL 9 67 565.2396424612895 1128.4647319893788 2 565.2396850585938 MULTI HCD FTMS 0 0 0 10550 216398.640625 0.18734180896577735 8 -0.24031448364257812 2 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 58.678817012210395 0.019429721296335044 1 EYEQ{I|L} 5 4 58.315 0 0 5.1677 0 0 448.1646900861344 0 448.1646900861344 0 38.09385934535719 0 0 0 1 0 1.274227503252014 0 + EYEQ{I|L} 5.1677 + + 191 NaN NaN 143950.4 NaN 7937 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10553 50.79 NaN 224770 35 0 16947 0.261 -1 YPDRIMNTF 9 64 586.7737018509798 1171.5328507687595 2 586.7739868164062 MULTI HCD FTMS 0 0 0 10550 129573.96875 0.032360838079325584 90 -2.5235862731933594 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 37.771325159832564 0.07557564330356273 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 -1 + 64.179 0 0 5.4782 5.4782 84.922 0 0 0 4.762036441594191 30.199718873656636 4.762036441594191 6.064921830680703 0 1.610924374808178 0 0 0.4247425010840047 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRYPNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRYPGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRP[WP]{[QN]|[E{I|L}]|[KN]} 5.4782;4.9605;4.7036;4.6922;4.1897;4.1745;3.9176;3.4037;2.6859;0.60759 +;-;-;-;-;-;-;-;+;- + 795 NaN NaN 138084.1 NaN 7938 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10554 50.794 NaN 160420 35 0 65690 0.261 + -1 MLCHWLPM 8 35 531.7326849530621 1061.450816972924 2 531.7332153320312 MULTI HCD FTMS 0 0 0 10550 61410.7421875 0.4238056429313689 5 -0.16141510009765625 4 2 Oxidation (M) _M(Oxidation (M))LCHWLPM(Oxidation (M))_ REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3759 0 0 896.4045350899147 0 896.4045350899147 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3759 + + 7 + NaN NaN 110908.3 NaN 7939 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10555 50.797 NaN 117520 35 0 17736 0.261 + 9619 HTDPVDYEF 9 55 561.7410432980238 NaN 0 561.7411499023438 PEAK HCD FTMS 0 0 0 10550 36818.6484375 0.616382064812371 1 -0.02957916259765625 5 Unmodified _HTDPVDYEF_ ENSG00000185115|ENST00000332303|NSMCE3 20.453626601364224 0.18435338882370536 1 EY 2 8 23.733 0 0 2.1163 0 0 165.07945449043126 661.2585242236474 826.3379787140786 0 0 0 0 0 1.5 0 0.5 0 EY 2.1163 - 8 NaN NaN 103905.5 NaN 7940 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10556 50.8 NaN 73928 35 0 7610.5 0.262 + 21810 QAPYSRLL 8 37 474.26915968985134 946.5237664465027 2 474.2687072753906 MULTI HCD FTMS 0 0 0 10550 16218.50390625 0.07576012535206549 7 -0.21073150634765625 6 Unmodified _QAPYSRLL_ REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF 21.74664581756881 0.4337896562907935 1 {I|L}{I|L} 2 -1 17.959 0 0 1.8973 0 0 702.3444081037125 0 702.3444081037125 0 10.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.8973 + + 4 NaN NaN 109977.6 NaN 7941 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10557 50.804 NaN 149550 35 0 54628 0.261 + -1 LWPWICGLWH 10 45 456.5615838905399 1366.6629222718198 3 456.5616760253906 MULTI HCD FTMS 0 0 0 10550 32025.13671875 0.5190132485061594 3 -0.08885574340820312 7 Carbamidomethyl (C) _LWPWIC(Carbamidomethyl (C))GLWH_ REV__ENST00000591806.5_1_19:1377445-1377805:+|nuORF 4.189502756095605 0.45312800054222196 1 {I|L}W 2 -1 42.959 0 0 3.1433 0 0 0 1064.4770523613108 1064.4770523613108 35.96910013008056 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}W 3.1433 + + 7 + NaN NaN 105097.7 NaN 7942 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10558 50.807 NaN 47484 35 0 4107.4 0.261 + 24401 RYKGPGFEYF 10 36 632.3116118557924 1262.6086707783847 2 632.31396484375 MULTI HCD FTMS 0 0 0 10550 19823.77734375 0.0443339806325991 32 -0.9442558288574219 8 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 4.406150317652783 0.4519812505573615 1 EY{M(Oxidation (M))|F} 3 7 24.693 0 0 1.9557 0 0 805.4274159162125 0 805.4274159162125 0 24.69273760456403 0 0 0 0 0 0 0 + EY{M(Oxidation (M))|F} 1.9557 + + 3 NaN NaN 109520.1 NaN 7943 2613 10550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10560 50.812 NaN 3190700 35 0 781210 0.327 + 24377 RYIPTAAAF 9 84 505.276884993559 1008.539217053918 2 505.2771911621094 MULTI HCD FTMS 0 0 0 10559 1949640.25 0.2708821083462993 6 -0.18115234375 1 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 81.89019881105858 0.005240739447516426 1 [Y{I|L}]R[TP]AAA{M(Oxidation (M))|F} 9 2 + 83.328 0 0 8.2622 8.2622 92.835 0 0 0 9.788107009300617 16.478174818886373 9.788107009300617 9.788107009300617 0 2.4247425010840047 1.0457574905606752 1.5189301784845295 0 [Y{I|L}]R[TP]AAA{M(Oxidation (M))|F};[YR]{I|L}[TP]AAA{M(Oxidation (M))|F};[HV][VP][TP]AAA{M(Oxidation (M))|F};[Y{I|L}]R[SG][VP]A{M(Oxidation (M))|F};[Y{I|L}]R[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[YR]{I|L}[SG][VP]A{M(Oxidation (M))|F};[YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VP]A{M(Oxidation (M))|F};[YR]{I|L}[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[SG][PG]{I|L}{M(Oxidation (M))|F};[HV][VP][NP]VT{M(Oxidation (M))|F} 8.2622;7.2917;5.7232;5.0025;4.3436;4.032;3.8855;3.3731;3.2913;3.1605 -;+;-;-;-;-;-;-;-;- + 642 NaN NaN 572373.7 NaN 7944 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10561 50.816 NaN 608600 35 0 73467 0.261 + 34654 YPSLREAAL 9 80 510.27973272332974 1018.5449125134595 2 510.2796936035156 MULTI HCD FTMS 0 0 0 10559 360477.28125 1 0 0 2 Unmodified _YPSLREAAL_ chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4 83.42873516780209 0.004742894019233849 1 YPS{I|L}REAA{I|L} 9 0 + 73.923 0 0 7.2577 7.2577 91.91 0 0 0 43.490306066298885 9.137342758552691 9.137342758552691 12.289784572998173 0 2.1549471895720984 1.6989700043360187 0.7302046884880937 0 + + YPS{I|L}REAA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}REAA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}{I|L}{[ET]|[MV]}A{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}R{[CA]|SS}P{I|L};[PS]Y{I|L}REAA{I|L};[PS][R{I|L}]YEAA{I|L};[PS][R{I|L}]EYAA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[KA]NT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}{I|L}{[CP]|[EA]}T{I|L};[PS][R{I|L}]EAYA{I|L} 7.2577;6.0511;3.7155;3.7068;3.206;3.0889;2.7276;2.703;2.5301;2.4277 +;+;-;-;-;-;-;-;-;- + 604 + NaN NaN 181468.2 NaN 7945 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10562 50.82 NaN 316670 35 0 27687 0.261 -1 IWLHNGNEI 9 77 569.2868270556344 NaN 0 569.300537109375 PEAK HCD FTMS 0 0 0 10559 6679.78369140625 0.5748628774279728 -1 0.02957916259765625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IWLHNGNEI_ ENSG00000065534|ENST00000360304|MYLK;MYLK|p.E665Q|1|0.22|ENSG00000065534|chr3:123708845-123708845|C/G|missense_variant;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-6|MYLK 6.723162845929126 0.26266733336404485 1 TV 2 -1 14.776 0 0 1.3001 0 0 232.11521404334945 701.3026217096311 933.4178357529806 0 0 0 0 0 0 0 0.3807196863200844 0 TV 1.3001 - 171 + NaN NaN 136023.7 NaN 7946 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10563 50.823 NaN 730920 35 0 43712 0.261 + 22942 QYVDFHNQL 9 91 582.2776253827192 1162.5406978322383 2 582.277587890625 MULTI HCD FTMS 0 0 0 10559 265974.28125 0.21857682557546837 -4 0.11505508422851562 4 Unmodified _QYVDFHNQL_ ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 157.7952019732125 5.857147217999733E-07 1 [YQ]VD{M(Oxidation (M))|F}HNQ{I|L} 9 0 + 70.425 0 0 6.0579 6.0579 84.332 0 0 0 2.554755914248986 2.554755914248986 2.554755914248986 2.554755914248986 0 1.9080306233405298 1.0969100130080565 0 1.8826033993680735 + + [YQ]VD{M(Oxidation (M))|F}HNQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VREDVWS;[YQ]VD{M(Oxidation (M))|F}HGGQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VD{[RE]|[WV]}VWS;[YQ]VD{M(Oxidation (M))|F}HN[AG]{I|L};[YQ]VDTHKWS;{[WS]|[C(Carbamidomethyl (C)){I|L}]}VDQQKWS;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F}[PG]NQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HK{[DA]|[EG]}S;{[{M(Oxidation (M))|F}H]|[RQ]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KC]VC(Carbamidomethyl (C)){I|L} 6.0579;5.8381;5.2658;4.7531;4.5646;4.4408;3.5616;3.0221;2.3015;2.1482 +;-;-;-;-;-;-;-;-;- + 5431 + NaN NaN 193663 NaN 7947 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10564 50.826 NaN 646740 35 0 175000 0.264 + 27469 SYVWRTYHL 9 72 408.8766903354884 1223.6082416066652 3 408.8768310546875 MULTI HCD FTMS 0 0 0 10559 149146.71875 0.6506788665275973 -3 0.0921478271484375 5 Unmodified _SYVWRTYHL_ ENSG00000161981|ENST00000293861|SNRNP25;ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;nc|ENSG00000161981|Q9BV90|SNRNP25 21.536976647645854 0.1742816388551942 1 SYV 3 6 54.253 0 0 4.4338 0 0 0 871.4220029117332 871.4220029117332 32.0609971201948 0 0 0 0 0.805462187404089 2 0 0 + SYV 4.4338 + + 69 + NaN NaN 185130.5 NaN 7948 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10565 50.83 NaN 396260 35 0 50941 0.261 + 21999 QFDVATHL 8 62 465.7380211749304 929.4614894166608 2 465.73724365234375 MULTI HCD FTMS 0 0 0 10559 111732.203125 0.7011683981152902 -2 0.06587982177734375 6 Unmodified _QFDVATHL_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF 34.10243960390752 0.30669083636501265 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVATH{I|L} 8 0 + 35.865 0 0 3.8587 3.8587 81.235 0 0 0 3.183436153931545 3.183436153931545 3.183436153931545 3.183436153931545 0 0.6747425010840047 0 0.2742275032520141 0 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVATH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}DVAG[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}DVQ[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}DVAQQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}G[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}P{[MG]|[TS]}G[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}QQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}P{[MG]|[TS]}QQ{I|L};[H{I|L}][YE]G[QA]{I|L};[H{I|L}][YE]QQ{I|L} 3.8587;3.5162;3.3325;3.3325;2.4762;2.336;2.2999;2.1524;0.64833;0.47204 +;-;-;-;-;-;-;-;-;- + 231 + NaN NaN 144091.2 NaN 7949 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10566 50.833 NaN 159860 35 0 11812 0.261 + 34358 YPEGFEIHSM 10 58 613.2633828160687 1224.5122126989372 2 613.2633056640625 MULTI HCD FTMS 0 0 0 10559 50697.7109375 0.14920006430312818 24 -0.7039222717285156 7 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 53.832793166522166 0.06385051108671999 1 YPEG[{M(Oxidation (M))|F}E]{I|L} 7 3 48.803 0 0 3.9855 0 0 0 386.11347376041255 386.11347376041255 41.813725836429896 0 0 0 0 0.6861818737241735 1.3010299956639813 0.6747425010840047 0 + YPEG[{M(Oxidation (M))|F}E]{I|L} 3.9855 + + 83 + NaN NaN 120047.7 NaN 7950 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10567 50.836 NaN 92584 35 0 12804 0.261 + 24789 RYPDRITLI 9 38 573.8350666957131 1145.655580458226 2 573.8353881835938 MULTI HCD FTMS 0 0 0 10559 70994.984375 0.03015346837166138 40 -1.1642646789550781 8 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 4.897010918128616 0.31389406404703984 1 RY 2 7 17.959 0 0 1.5676 0 0 0 823.4682091218162 823.4682091218162 12.474250108400469 0 0 0 0 0 0 0 0 + RY 1.5676 + + 6 + NaN NaN 110456.7 NaN 7951 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10568 50.84 NaN 268600 35 0 95008 0.264 + 23049 RDRHDFDHF 9 66 415.5242091363572 1243.5507980092716 3 415.5244140625 MULTI HCD FTMS 0 0 0 10559 7845.88916015625 0.292083641260864 1 -0.0330047607421875 9 Unmodified _RDRHDFDHF_ REV__ENSG00000130254|ENST00000252542|SAFB2;REV__ENSG00000160633|ENST00000588852|SAFB;REV__ENST00000590000.1_1_19:5591605-5592858:-|nuORF;REV__nc|ENSG00000160633|Q15424-2|SAFB;REV__nc|ENSG00000160633|Q15424-4|SAFB;REV__nc|ENSG00000160633|Q15424|SAFB 4.3292370932331545 0.3181982124262546 1 H{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4442 0 0 941.4129328743091 0 941.4129328743091 0 15.194590330151847 0 0 0 0 0 0 0 H{M(Oxidation (M))|F} 1.4442 + + 25 + NaN NaN 141567.3 NaN 7952 2614 10559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10570 50.845 NaN 569710 35 0 80809 0.327 + 13019 KYITDVVKL 9 92 539.8289299874173 1077.6433070416344 2 539.8289184570312 MULTI HCD FTMS 0 0 0 10569 349227.125 0.5403992291553069 3 -0.0988311767578125 1 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 110.79276546118962 0.0028129822227594098 1 KY{I|L}TDVVK{I|L} 9 0 + 83.605 0 0 7.7581 7.7581 87.947 0 0 0 54.9446993827563 12.702264589233394 12.702264589233394 3.69325543266271 0 2.3494850021680094 0 0.5451140161145328 0.3054621874040891 + + KY{I|L}TDVVK{I|L};K{I|L}YTDVVK{I|L};{I|L}KYTDVVK{I|L};[YK]{I|L}TDVVK{I|L};[YK]{I|L}TDVV{I|L}K;K{I|L}[VS][YE]VK{I|L};{I|L}K[VS][YE]VK{I|L} 7.7581;7.4154;7.2589;6.5052;6.4317;2.8773;2.7209 +;-;-;+;-;-;- + 407 + NaN NaN 181806.6 NaN 7953 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10571 50.849 NaN 332430 35 0 31022 0.261 + 17119 LYLKVKGNVF 10 62 590.8581647149076 1179.7017764966151 2 590.8582153320312 MULTI HCD FTMS 0 0 0 10569 185519 0.3836011287677068 5 -0.1481475830078125 2 Unmodified _LYLKVKGNVF_ ENSG00000108298|ENST00000225430|RPL19;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF 99.79894945604345 0.00025031564603709316 1 {I|L}Y{I|L}KV 5 5 74.993 0 0 6.3569 0 0 0 560.2835531346385 560.2835531346385 26.244755215861773 0 0 0 0 1.6549471895720984 2 0 0.3494850021680094 + {I|L}Y{I|L}KV 6.3569 + + 191 + NaN NaN 155536.1 NaN 7954 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10572 50.853 NaN 535300 35 0 176950 0.261 + -1 IYSMLYIF 8 58 533.2721562293488 1064.5297595254974 2 534.2922973632812 MULTI HCD FTMS 0 0 0 10569 12106.84375 0.6707031239010882 -1 0.0330047607421875 3 Oxidation (M) _IYSM(Oxidation (M))LYIF_ REV__ENSG00000141338|ENST00000586539|ABCA8;REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF;REV__nc|ENSG00000141338|O94911-1|ABCA8 11.114462752807354 0.5120171699125776 1 EA 2 -1 20.969 0 0 1.9698 0 0 0 861.4163296489963 861.4163296489963 5.484550065040281 0 0 0 0 0 0 0 0 EA 1.9698 - 34 + NaN NaN 175438.7 NaN 7955 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10573 50.856 NaN 328970 35 0 51778 0.261 + 9187 HPLHDFIL 8 64 496.2716237911224 990.5286946490448 2 496.2715759277344 MULTI HCD FTMS 0 0 0 10569 114414.515625 0.4589680145846263 4 -0.12848663330078125 4 Unmodified _HPLHDFIL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 32.116972079565 0.3321965280364247 1 {I|L}QQ{M(Oxidation (M))|F}{I|L}{I|L} 6 4 34.882 0 0 3.5216 0 0 230.09016616035314 0 230.09016616035314 0 16.510482621046467 0 0 0 1.274227503252014 0 0 0 {I|L}QQ{M(Oxidation (M))|F}{I|L}{I|L} 3.5216 - 186 NaN NaN 158619.5 NaN 7956 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10574 50.859 NaN 236280 35 0 34635 0.261 -1 LPDQDEMDL 9 59 546.231699562772 1090.4488461923438 2 546.2318725585938 MULTI HCD FTMS 0 0 0 10569 93431.7578125 0.6484941052275633 6 -0.17773056030273438 5 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 27.223235318498237 0.1251536255799991 1 QDE{M(Oxidation (M))|F}D{I|L} 6 -1 49.418 0 0 4.5319 0 0 325.16411025215 0 325.16411025215 0 30.120703440320465 0 0 0 1.3494850021680094 0 0.3807196863200844 0 QDE{M(Oxidation (M))|F}D{I|L} 4.5319 + + 88 NaN NaN 118028.6 NaN 7957 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10575 50.863 NaN 284620 35 0 23939 0.261 + 35766 YYMIGEQKF 9 70 597.7789038085 NaN 0 597.7786865234375 PEAK HCD FTMS 0 0 0 10569 144711.078125 0.5920964676140201 -3 0.09888458251953125 6 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 70.33199760932243 0.00615208821803917 1 VY{M(Oxidation (M))|F}{I|L}GEQ 7 3 59.328 0 0 4.9708 0 0 64.00450747894782 290.15061365299067 354.1551211319385 0 0 0 0 0 2.274227503252014 0 0 0.8494850021680094 VY{M(Oxidation (M))|F}{I|L}GEQ 4.9708 - 441 + NaN NaN 123966.6 NaN 7958 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10576 50.866 NaN 389450 35 0 31678 0.261 + 30669 VPEDVEQQL 9 77 528.7632702252013 1055.5119875172024 2 528.7637939453125 MULTI HCD FTMS 0 0 0 10569 110609.796875 0.8026194159687661 -1 0.0330047607421875 7 Unmodified _VPEDVEQQL_ ENSG00000235173|ENST00000347708|HGH1;ENST00000534255.1_1_8:145193835-145194452:+|nuORF 53.832793166522166 0.026208976789938845 1 [VP]E[DV]EGAQ{I|L} 10 2 + 51.406 0 0 4.8702 4.8702 82.8 0 0 0 0.46265935169152783 32.421525057367404 0.46265935169152783 3.521825181113627 0 1.3807196863200843 0 0.25 0.3494850021680094 [VP]E[DV]EGAQ{I|L};[VP]E[DV]EQQ{I|L};{[QN]|[E{I|L}]|[KN]}QE[EP]AQ{I|L};[VP]E[DV]EGA[AG]{I|L};[VP]E[DV]EQ[AG]{I|L};[Q{I|L}]EE[EP]AQ{I|L};{[QN]|[E{I|L}]|[KN]}[AG]E[EP]AQ{I|L};{[QN]|[E{I|L}]|[KN]}QE[EP]A[AG]{I|L};[Q{I|L}]EE[EP]A[AG]{I|L};[VP]E{[CA]|SS}[EP]AQ{I|L} 4.8702;4.5366;3.8707;3.6709;3.6642;3.6351;2.9983;2.9983;2.7627;2.3862 -;+;-;-;-;-;-;-;-;- + 493 NaN NaN 145758 NaN 7959 2615 10569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10578 50.871 NaN 579740 35 0 103200 0.327 -1 PDKACVSHL 9 84 513.7537640428991 NaN 0 513.7680053710938 PEAK HCD FTMS 0 0 0 10577 8664.5517578125 0.47611427900502884 1 -0.032924652099609375 1 Carbamidomethyl (C) _PDKAC(Carbamidomethyl (C))VSHL_ ENST00000266659.7_2_12:75874610-75874682:+|nuORF 16.942295170755138 0.2079222001251384 1 PD{M(Oxidation (M))|F}VVS 6 -1 36.261 0 0 3.5359 0 0 113.05590834266134 265.1306246393188 378.1865329819801 0 0 0 0 0 0 0 0.75 0 PD{M(Oxidation (M))|F}VVS 3.5359 - 341 + NaN NaN 188616.9 NaN 7960 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10579 50.875 NaN 138140 35 0 12146 0.261 -1 YPDPMVRGF 9 51 549.2574049411958 1096.5002569491915 2 549.2680053710938 MULTI HCD FTMS 0 0 0 10577 7766.97705078125 0.28042958127079054 -4 0.12515640258789062 2 Oxidation (M) _YPDPM(Oxidation (M))VRGF_ ENSG00000121879|ENST00000263967|PIK3CA;PIK3CA|p.C604R|1|0.27|ENSG00000121879|chr3:179219634-179219634|T/C|missense_variant 10.073929032068715 0.27331982688540024 1 YPD 3 -1 20.406 0 0 1.861 0 0 0 718.3361910455686 718.3361910455686 7.843181179205061 0 0 0 0 0 0 0.5 0 YPD 1.861 + + 71 + NaN NaN 100266.4 NaN 7961 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10580 50.879 NaN 294360 35 0 34572 0.261 + 8539 HALDYADEL 9 67 523.743039977953 1045.471527022706 2 523.7434692382812 MULTI HCD FTMS 0 0 0 10577 82697.7734375 0.8930785225942565 -2 0.059276580810546875 3 Unmodified _HALDYADEL_ ENSG00000153201|ENST00000283195|RANBP2 30.636539890814138 0.10832830463492794 1 YADE{I|L} 5 4 41.035 0 0 3.9251 0 0 436.2055836408219 0 436.2055836408219 0 28.878449842615442 0 0 0 0.7302046884880937 0 0 0 + YADE{I|L} 3.9251 + + 211 NaN NaN 131079.1 NaN 7962 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10581 50.882 NaN 302870 35 0 38875 0.261 -1 HAVIQEYML 9 73 560.2786811148007 1118.5428092964014 2 560.2784423828125 MULTI HCD FTMS 0 0 0 10577 50949.42578125 0.08929614114075791 -12 0.34903717041015625 4 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 27.628801355627647 0.12213550946336599 1 {[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L} 9 -1 + 52.68 0 0 4.7097 4.7097 88.121 0 0 0 18.42741212309626 33.06810945375766 18.42741212309626 15.56810945375765 0 0.805462187404089 1.5228787452803376 0.3252574989159953 0 {[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F}{I|L};[Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[VP][HV]A{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}DE{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}[DC]{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[HN][YV]{M(Oxidation (M))|F}VV;{[QS]|[NT]}[DV][WK]P{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}VV;[Q{I|L}]{[WN]|[YH]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}E{I|L} 4.7097;3.3179;2.7233;2.6983;2.3132;2.2016;1.7533;1.2607;1.1284;0.21517 -;-;-;-;-;-;-;-;-;- 356 NaN NaN 150799.2 NaN 7963 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10582 50.886 NaN 176700 35 0 53686 0.264 + 7191 FSLHPGQPAYF 11 42 421.8765733280575 1262.6078905843724 3 421.877197265625 MULTI HCD FTMS 0 0 0 10577 46367.9375 0.059875749388117065 35 -1.0262413024902344 5 Unmodified _FSLHPGQPAYF_ REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF 6.623454094837244 0.3898724468670146 1 Y{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.3336 0 0 934.4643834688239 0 934.4643834688239 0 22.47425010840047 0 0 0 0.8494850021680094 0 0 0 Y{M(Oxidation (M))|F} 2.3336 + + 11 NaN NaN 111218 NaN 7964 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10583 50.889 NaN 109080 35 0 23057 0.261 + 17773 MELINQVNQVD 11 38 434.88214623931003 NaN 0 434.88238525390625 PEAK HCD FTMS 0 0 0 10577 64602.984375 0.604411220385306 149 -3.942943572998047 6 Unmodified _MELINQVNQVD_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8-5|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 1.0135738785822086 0.339244926269168 1 S 1 -1 3.9794 0 0 0.45859 0 0 346.9845550745201 430.7208346002563 777.7053896747764 0 0 0 0 0 0 0 0 0 S 0.45859 - 1 + NaN NaN 102035.6 NaN 7965 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10584 50.892 NaN 151670 35 0 38318 0.261 + 19043 NDYHIPVL 8 41 485.753486946709 969.492420960218 2 485.7532653808594 MULTI HCD FTMS 0 0 0 10577 59317.109375 0.5273626975311939 -4 0.12515640258789062 7 Unmodified _NDYHIPVL_ tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1 7.910154910731844 0.5302565402355366 1 V{I|L} 2 6 25.969 0 0 2.6786 0 0 739.3264041818646 0 739.3264041818646 0 6.505149978319906 0 0 0 0.5 0 0 0 + V{I|L} 2.6786 + + 17 NaN NaN 110493.2 NaN 7966 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10585 50.896 NaN 231740 35 0 22420 0.261 + 2242 DLDLLPPPPPP 11 61 585.8219782648786 1169.629403596557 2 585.8226318359375 MULTI HCD FTMS 0 0 0 10577 36595.18359375 1 0 0 8 Unmodified _DLDLLPPPPPP_ ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1 18.1463463914782 0.2989727007011538 1 {NN|[MP]|[D{I|L}]|[EV]}VE{I|L}[YK][YK] 9 8 + 31.188 0 0 2.6665 2.6665 82.846 0 0 0 17.375977872132328 3.925449767853312 3.925449767853312 9.075221787320515 0 0.805462187404089 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}VE{I|L}[YK][YK];{NN|[MP]|[D{I|L}]|[EV]}V[YK]{I|L}E[YK];{NN|[MP]|[D{I|L}]|[EV]}VE{I|L}AA{[HG]|PP}[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}V[YK]{I|L}{[CA]|SS}[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}VE[RV]{[HG]|PP}[{M(Oxidation (M))|F}V] 2.6665;1.8906;1.4359;0.6954;0.61255 -;-;-;-;- 70 + NaN NaN 123624.9 NaN 7967 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10586 50.899 NaN 39411 35 0 8819.5 0.261 -1 RYYYRHCL 8 28 615.7933596288963 1229.5721663245924 2 615.7930297851562 MULTI HCD FTMS 0 0 0 10577 5855.06689453125 0.18861452931121842 1 -0.032924652099609375 9 Carbamidomethyl (C) _RYYYRHC(Carbamidomethyl (C))L_ ENST00000484159.5_1_9:6434093-6493966:+|nuORF 0.6903765706972694 0.5409681170271811 1 M 1 -1 3.9794 0 0 0.32364 0 0 669.2073114435362 426.3005770318969 1095.5078884754332 0 0 0 0 0 0 0 0 0 M 0.32364 - 2 + NaN NaN 87435.2 NaN 7968 2616 10577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10588 50.904 NaN 1988900 35 0 396840 0.327 + 10790 ISQPQEPEL 9 78 520.7664353640528 1039.5183177949054 2 520.7665405273438 MULTI HCD FTMS 0 0 0 10587 821507.4375 0.3489195113896873 -3 0.09220123291015625 1 Unmodified _ISQPQEPEL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 110.79276546118962 0.0028129822227594098 1 [EP][KA]QEPE{I|L} 9 4 + 83.222 0 0 8.0059 8.0059 89.19 0 0 0 13.732040608115454 16.478174818886373 13.732040608115454 5.791812460476251 0 1.805462187404089 1.5228787452803376 0.7059771852360797 1.0994850021680094 [EP][KA]QEPE{I|L};[EP]Q[KA]EPE{I|L};[EP][KA][AG]EPE{I|L};{I|L}{[QS]|[NT]}PQEPE{I|L};[EP][AG][KA]EPE{I|L};[TP]{[QV]|[N{I|L}]|[RA]|[KV]}QEPE{I|L};{I|L}{[QS]|[NT]}P[AG]EPE{I|L};{[QN]|[E{I|L}]|[KN]}P[DV]EPE{I|L};[EP]{I|L}Q{[QS]|[NT]}PE{I|L};[EP]Q{I|L}{[QS]|[NT]}PE{I|L} 8.0059;7.4487;7.12;6.6849;6.5629;6.0819;5.799;5.6009;5.5001;5.4239 -;-;-;+;-;-;-;-;-;- + 654 NaN NaN 384468.2 NaN 7969 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10589 50.908 NaN 422830 35 0 73143 0.261 + 16064 LPSPAIDHEQL 11 75 610.3195722082341 1218.6245914832682 2 610.3197631835938 MULTI HCD FTMS 0 0 0 10587 153554.890625 0.6517775946119171 -3 0.09220123291015625 2 Unmodified _LPSPAIDHEQL_ ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 87.12335221954112 0.005855231244176575 1 {I|L}PSPMD{I|L} 7 5 88.168 0 0 7.235 0 0 0 462.23569666080317 462.23569666080317 68.38631371333364 0 0 0 0 2.1747425010840047 1.3979400086720375 1.25 0 {I|L}PSPMD{I|L} 7.235 - 470 + NaN NaN 158915.2 NaN 7970 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10590 50.912 NaN 373860 35 0 39161 0.261 + 5456 FILLIFILE 9 82 560.8524627413058 NaN 0 560.8397827148438 PEAK HCD FTMS 0 0 0 10587 8069.0751953125 0.8954751736847724 1 -0.03963470458984375 3 Unmodified _FILLIFILE_ ENSG00000166762|ENST00000396879|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;nc|ENSG00000166762|Q96P56-3|CATSPER2;nc|ENSG00000166762|Q96P56-4|CATSPER2 15.847184025352803 0.21527282152051216 1 {M(Oxidation (M))|F}{I|L}VKS 5 7 28.22 0 0 2.5203 0 0 113.11051293934698 429.2250857258494 542.3355986651964 0 0 0 0 0 0 0 0.7742275032520141 0.3054621874040891 {M(Oxidation (M))|F}{I|L}VKS 2.5203 - 163 + NaN NaN 150973.6 NaN 7971 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10591 50.915 NaN 272190 35 0 37776 0.261 -1 KYAMMFAEL 9 56 568.261457088658 1134.5083612441158 2 568.2617797851562 MULTI HCD FTMS 0 0 0 10587 109091.3515625 0.36113147326363165 -7 0.20725631713867188 4 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 21.536976647645854 0.1742816388551942 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 6 -1 34.826 0 0 3.0697 0 0 362.19441420722814 0 362.19441420722814 0 11.63811573052314 0 0 0 0.9419628234359578 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 3.0697 + + 73 NaN NaN 126993.9 NaN 7972 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10592 50.919 NaN 134590 35 0 20337 0.264 -1 0 47 424.08158163941823 NaN 0 424.0816955566406 PEAK HCD FTMS 0 0 0 10587 73968.78125 0.458097055571291 151 -3.981800079345703 5 NaN NaN 1 Y 1 -1 6.9897 0 0 0.82606 0 0 131.82934872629897 548.2426241510374 680.0719728773363 0 0 0 0 0 0 0 0 0 Y 0.82606 - 3 + NaN NaN 102735.8 NaN 7973 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10593 50.922 NaN 177120 35 0 24513 0.261 -1 PMSVPEPHAA 10 63 526.248412197325 1050.48227146145 2 526.248291015625 MULTI HCD FTMS 0 0 0 10587 55746.65234375 0.5653929348420786 3 -0.08895111083984375 6 Oxidation (M) _PM(Oxidation (M))SVPEPHAA_ ENSG00000166963|ENST00000300231|MAP1A;MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant;nc|ENSG00000166963|P78559-2|MAP1A 14.838274106304384 0.3723198072575719 1 S[EP] 3 -1 18.301 0 0 1.7421 0 0 719.3627808552011 0 719.3627808552011 0 5.53654624152291 0 0 0 0.8807196863200843 0 0.3807196863200844 0 S[EP] 1.7421 - 157 NaN NaN 113377.4 NaN 7974 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10594 50.925 NaN 140930 35 0 10449 0.261 + 1353 AYPHNLMTF 9 43 555.2577483138126 1108.5009436944251 2 555.2578125 MULTI HCD FTMS 0 0 0 10587 66023.53125 0.04589938686196847 70 -2.008686065673828 7 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 43.85829265575387 0.04763305254408404 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 6 28.416 0 0 2.5635 0 0 695.3403797834 0 695.3403797834 0 28.416375079047498 0 0 0 0.5 0 0.5 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.5635 + + 37 NaN NaN 123906.3 NaN 7975 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10595 50.929 NaN 86770 35 0 6261.9 0.261 + -1 CDFLNWGNTF 10 38 637.2689963875462 1272.5234398418922 2 637.7705078125 MULTI HCD FTMS 0 0 0 10587 15138.958984375 0.34130298032738926 7 -0.20399856567382812 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 7.101721422024254 0.4377131641736035 1 NT{M(Oxidation (M))|F} 3 -1 32.435 0 0 2.5489 0 0 892.3514100441155 0 892.3514100441155 0 32.43501263708417 0 0 0 0.4247425010840047 0 0.5 0 NT{M(Oxidation (M))|F} 2.5489 + + 4 NaN NaN 113550.5 NaN 7976 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10596 50.932 NaN 74886 35 0 9513.8 0.261 + 5082 FEEMRTNYI 9 50 601.7790637740396 1201.5435746148792 2 601.779052734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _FEEMRTNYI_ ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2;nc|ENSG00000151623|P08235-4|NR3C2 3.2813086475875832 0.32614229037259 1 VE{I|L} 3 7 26.198 0 0 2.1804 0 0 842.3415394513687 0 842.3415394513687 0 19.20818753952375 0 0 0 0 0 0 0 VE{I|L} 2.1804 - 11 NaN NaN 103834.9 NaN 7977 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10597 50.935 NaN 51898 35 0 4436.6 0.263 + 24674 RYLSPKYIKMF 11 30 482.60394014715575 1444.7899910416672 3 482.60382080078125 MULTI HCD FTMS 0 0 0 10587 30223.78125 0.09280842894192877 37 -1.0720634460449219 10 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 16.274544907608252 0.3152817683996968 1 M{M(Oxidation (M))|F} 2 9 25.217 0 0 1.7453 0 0 1148.6708636996734 0 1148.6708636996734 0 18.622731327798547 0 0 0 0.4247425010840047 0 0 0 + M{M(Oxidation (M))|F} 1.7453 + + 4 + NaN NaN 95971.9 NaN 7978 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10598 50.939 NaN 234270 35 0 27696 0.261 + 4792 EYVEKFYRI 9 59 416.2203591694848 1245.6392481086546 3 416.2278137207031 MULTI HCD FTMS 0 0 0 10587 33679.22265625 0.8051044250352647 -1 0.032924652099609375 11 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 1 [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 9 0 + 30.569 0 0 2.4541 2.4541 87.611 0 0 0 16.589249857740857 2.3764301679958812 2.3764301679958812 30.56864994446123 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 2.4541 + + 80 + NaN NaN 125371 NaN 7979 2617 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10600 50.944 NaN 411660 35 0 33758 0.327 + 35321 YWMHVQNTF 9 68 621.2742868178269 1240.5340207024537 2 621.2742309570312 MULTI HCD FTMS 0 0 0 10599 192498.984375 0.5530123486693025 5 -0.13473129272460938 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 144.35026110057638 1.4798765981150827E-05 1 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 82.19 0 0 6.6254 6.6254 89.097 0 0 0 1.6361582551064373 1.6361582551064373 1.6361582551064373 9.208187539523749 0 2.1549471895720984 1.3979400086720375 0.2742275032520141 0.75 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQSQ{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQS[AG]{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]SQ{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}[VG][HA]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]GGT{M(Oxidation (M))|F};[WY]T{[DS]|[MA]|[CV]|TT}[HA]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]S[AG]{M(Oxidation (M))|F} 6.6254;5.8831;5.8831;5.5755;4.8332;4.8332;4.7286;4.5398;4.0923;3.7521 +;-;-;-;-;-;-;-;-;- + 1375 NaN NaN 160663.8 NaN 7980 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10601 50.948 NaN 467330 35 0 85895 0.261 + 10754 IRYELIARA 9 77 552.8299759521251 1103.64539897105 2 552.8302001953125 MULTI HCD FTMS 0 0 0 10599 133994.25 0.6599669248184917 3 -0.07889938354492188 2 Unmodified _IRYELIARA_ REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant;REV__ENSG00000142102|ENST00000409548|PGGHG;REV__ENST00000474221.5_1_11:291984-293434:+|nuORF;REV__ENST00000476372.1_1_11:291984-293434:+|nuORF 15.248480904072842 0.22861284681709862 1 Q{M(Oxidation (M))|F} 2 -1 23.271 0 0 2.1086 0 0 810.5085714337439 0 810.5085714337439 0 1.9453781259591096 0 0 0 0 0 0 0.3807196863200844 Q{M(Oxidation (M))|F} 2.1086 - 147 + NaN NaN 167480.6 NaN 7981 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10602 50.952 NaN 801150 35 0 160720 0.263 + 10870 IVRSHTQMDVI 11 65 433.5676283446035 1297.6810556340106 3 433.56781005859375 MULTI HCD FTMS 0 0 0 10599 249371.5625 0.7027660301115617 -3 0.0988311767578125 3 Unmodified _IVRSHTQMDVI_ REV__ENSG00000237521|ENST00000456448|OR7E24 13.51866281300042 0.33929385944539686 1 YYV{I|L} 4 -1 37.167 0 0 2.8641 0 0 741.3887806623062 0 741.3887806623062 0 2.4877376881172353 0 0 0 1 0 0 0 YYV{I|L} 2.8641 - 34 NaN NaN 207672.7 NaN 7982 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10603 50.955 NaN 298510 35 0 35345 0.261 + 18580 MVSDEYEQL 9 58 565.2396314481397 1128.4647099630793 2 565.2396850585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 58.678817012210395 0.019429721296335044 1 YEQ{I|L} 4 5 50.433 0 0 4.4692 0 0 577.2059922994046 0 577.2059922994046 0 35.21144069483583 0 0 0 1 0 0.8494850021680094 0 + YEQ{I|L} 4.4692 + + 109 NaN NaN 130335.9 NaN 7983 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10604 50.958 NaN 607050 35 0 70399 0.261 + 17503 LYTHHFRS 8 77 530.769018996595 1059.52348505999 2 531.758056640625 MULTI HCD FTMS 0 0 0 10599 19831.232421875 0.4368135794352583 -3 0.0988311767578125 5 Unmodified _LYTHHFRS_ REV__ENSG00000020633|ENST00000308873|RUNX3;REV__nc|ENSG00000020633|Q13761-2|RUNX3;REV__RUNX3|p.A299D|1|0.21|ENSG00000020633|chr1:24902474-24902474|G/T|missense_variant 11.640296217721598 0.50814828952472 1 [Y{I|L}]{I|L} 3 -1 27.804 0 0 2.6242 0 0 0 667.2694781793274 667.2694781793274 8.322646798160562 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.6242 - 587 NaN NaN 184299.6 NaN 7984 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10605 50.962 NaN 396360 35 0 82548 0.261 + 32831 WVEAEQLLQ 9 60 558.2902900679481 1114.5660272026962 2 558.7792358398438 MULTI HCD FTMS 0 0 0 10599 12739.51171875 0.606181618895055 5 -0.13473129272460938 6 Unmodified _WVEAEQLLQ_ REV__ENSG00000150527|ENST00000640607|MIA2;REV__ENSG00000212710|ENST00000391403|CTAGE1;REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF;REV__nc|ENSG00000150527|Q96PC5-10|MIA2;REV__nc|ENSG00000150527|Q96PC5-11|MIA2;REV__nc|ENSG00000150527|Q96PC5-12|MIA2;REV__nc|ENSG00000150527|Q96PC5-13|MIA2;REV__nc|ENSG00000150527|Q96PC5-14|MIA2;REV__nc|ENSG00000150527|Q96PC5-5|MIA2;REV__nc|ENSG00000150527|Q96PC5-6|MIA2;REV__nc|ENSG00000150527|Q96PC5-7|MIA2;REV__nc|ENSG00000150527|Q96PC5-8|MIA2;REV__nc|ENSG00000150527|Q96PC5-9|MIA2;REV__nc|ENSG00000232872|Q8IX95|CTAGE3P 15.847184025352803 0.2234401846867398 1 [Q{I|L}]SK{[RE]|[WV]}EPE 9 -1 + 22.33 0 0 2.0034 2.0034 81.39 0 0 0 0.07901543333617056 0.07901543333617056 0.07901543333617056 6.00833760139686 0 0.4247425010840047 0 0 0 [Q{I|L}]SK{[RE]|[WV]}EPE;{[QN]|[E{I|L}]|[KN]}{I|L}T{[RE]|[WV]}EPE;[Q{I|L}]S{M(Oxidation (M))|F}[PG][Q{I|L}]PE;[Q{I|L}]Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}]PE;{[QS]|[NT]}{I|L}K{[RE]|[WV]}EPE;{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}[PG][Q{I|L}]PE 2.0034;1.4644;1.1062;1.0003;0.92418;0.026972 -;-;-;-;-;- 367 NaN NaN 146683.9 NaN 7985 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10606 50.965 NaN 275770 35 0 18597 0.261 + 34253 YPDRIMNTF 9 74 586.7737018509798 1171.5328507687595 2 586.7739868164062 MULTI HCD FTMS 0 0 0 10599 116743.5390625 0.029156464071098256 95 -2.5838241577148438 7 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 51.487983226225225 0.029489205318603332 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 68.369 0 0 5.8358 5.8358 85.539 0 0 0 19.13734275855269 30.409934300658463 19.13734275855269 6.020599913279625 0 1.6307196863200843 1.6989700043360187 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}[QA]Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPY[QA]Y 5.8358;5.3219;5.0498;4.9818;4.637;4.5359;4.1958;3.851;3.5516;3.0377 +;-;-;-;-;-;-;-;-;- + 683 NaN NaN 148785.6 NaN 7986 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10607 50.968 NaN 685990 35 0 72574 0.261 + 26033 SPEEMEEIQ 9 102 546.231699562772 1090.4488461923438 2 547.2224731445312 MULTI HCD FTMS 0 0 0 10599 7791.04541015625 0.2602097697599178 14 -0.4011039733886719 8 Unmodified _SPEEMEEIQ_ ENSG00000183318|ENST00000689094|SPDYE4 7.289230182591677 0.29575926068275815 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KEVEQ 8 6 33.665 0 0 3.0872 0 0 0 126.93579331760601 126.93579331760601 13.927448007657759 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KEVEQ 3.0872 - 771 NaN NaN 202856.2 NaN 7987 2618 10599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10609 50.973 NaN 1728800 35 0 103150 0.327 + 22943 QYVDFHNQL 9 102 582.2776253827192 1162.5406978322383 2 582.2777709960938 MULTI HCD FTMS 0 0 0 10608 972676.375 0.7993423776185272 1 -0.01966094970703125 1 Unmodified _QYVDFHNQL_ ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 203.63889746883072 1.2993995354712843E-17 1 [YQ]VD{M(Oxidation (M))|F}HNQ{I|L} 9 0 + 85.47 0 0 7.352 7.352 85.82 0 0 0 0.643265708843046 0.643265708843046 0.643265708843046 0.643265708843046 0 2.555462187404089 1.2218487496163564 1.7302046884880937 1.9916440611282626 + + [YQ]VD{M(Oxidation (M))|F}HNQ{I|L};QYVD{M(Oxidation (M))|F}HNQ{I|L};[YQ]VD{M(Oxidation (M))|F}HN[AG]{I|L};[YQ]VD{M(Oxidation (M))|F}HGGQ{I|L};QYVD{M(Oxidation (M))|F}HGGQ{I|L};[YQ]VD{M(Oxidation (M))|F}HGG[AG]{I|L};[NS][TA]N{[RE]|[WV]}VC(Carbamidomethyl (C)){I|L};[DV][YQ]{M(Oxidation (M))|F}HNQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F}[PG]NQ{I|L};[YQ][HQ][QA]{M(Oxidation (M))|F}E{I|L} 7.352;7.2966;6.5599;6.5599;6.5046;5.7716;3.5566;3.3878;3.1088;2.8908 +;+;-;-;-;-;-;-;-;- + 11967 NaN NaN 360549.7 NaN 7988 2619 10608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10610 50.978 NaN 1655100 35 0 270190 0.261 + 24378 RYIPTAAAF 9 97 505.276884993559 1008.539217053918 2 505.27691650390625 MULTI HCD FTMS 0 0 0 10608 634655.8125 0.08817878301611469 11 -0.3088951110839844 2 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 47.748688679222035 0.03472022231463587 1 AAA{M(Oxidation (M))|F} 4 5 43.805 0 0 4.3434 0 0 630.3491466913189 0 630.3491466913189 0 20.27453873726023 0 0 0 1.6382104921644451 0 0 0 + AAA{M(Oxidation (M))|F} 4.3434 + + 502 NaN NaN 357360.9 NaN 7989 2619 10608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10611 50.981 NaN 633460 35 0 71936 0.261 + 14679 LGYLENTNV 9 74 511.7603553733448 NaN 0 511.7431640625 PEAK HCD FTMS 0 0 0 10608 11109.685546875 1 0 0 3 Unmodified _LGYLENTNV_ CCDC73|p.T895Lfs*8|1|0.12|ENSG00000186714|chr11:32613635-32613635|T/-|frameshift_variant;ENSG00000186714|ENST00000335185|CCDC73 22.736283301280096 0.1690317064107932 1 SNNENN 6 6 44.245 0 0 4.3314 0 0 131.12733340832045 215.10360132388908 346.23093473220956 0 0 0 0 0 0 0 0.8494850021680094 0.6989700043360187 SNNENN 4.3314 - 268 + NaN NaN 182118.3 NaN 7990 2619 10608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10612 50.985 NaN 648390 35 0 185430 0.262 + 27470 SYVWRTYHL 9 69 408.8766903354884 1223.6082416066652 3 408.8767395019531 MULTI HCD FTMS 0 0 0 10608 177638.015625 0.7749771743408643 2 -0.049243927001953125 4 Unmodified _SYVWRTYHL_ ENSG00000161981|ENST00000293861|SNRNP25;ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;nc|ENSG00000161981|Q9BV90|SNRNP25 17.11289562659939 0.2125047172822487 1 SYV 3 6 50.445 0 0 4.1227 0 0 0 871.4213629001409 871.4213629001409 29.89909385331508 0 0 0 0 0.4247425010840047 2 0 0 + SYV 4.1227 + + 89 + NaN NaN 181630.7 NaN 7991 2619 10608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10613 50.988 NaN 603910 35 0 39366 0.261 + 6699 FPNVEIVTI 9 95 516.2899163252139 1030.5652797172277 2 516.7889404296875 MULTI HCD FTMS 0 0 0 10608 202740.375 0.7430454720063111 6 -0.17091751098632812 5 Unmodified _FPNVEIVTI_ ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 15.847184025352803 0.2234401846867398 1 WVE{M(Oxidation (M))|F} 4 7 29.702 0 0 2.8821 0 0 451.33366458226516 0 451.33366458226516 0 7.279659778248622 0 0 0 0 0 0.5 0 WVE{M(Oxidation (M))|F} 2.8821 - 445 + NaN NaN 172824.3 NaN 7992 2619 10608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10615 50.993 NaN 920680 35 0 223440 0.327 + 427 ALAISDHFP 9 50 485.753486946709 969.492420960218 2 485.7637939453125 MULTI HCD FTMS 0 0 0 10614 112478.7734375 1 0 0 1 Unmodified _ALAISDHFP_ ENSG00000167968|ENST00000320700|DNASE1L2;nc|ENSG00000167968|Q92874-2|DNASE1L2 9.347437153973935 0.2795965555214564 1 AA{I|L}{I|L} 4 6 31.938 0 0 3.2943 0 0 583.2604197278655 0 583.2604197278655 0 9.719712763997563 0 0 0 0 0 0 0 AA{I|L}{I|L} 3.2943 - 70 NaN NaN 220569.8 NaN 7993 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10616 50.997 NaN 435050 35 0 35253 0.261 + 35767 YYMIGEQKF 9 78 597.7789038085 NaN 0 597.7788696289062 PEAK HCD FTMS 0 0 0 10614 213813.125 0.8748327887700542 2 -0.055850982666015625 2 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 103.41943736471063 1.717585935371837E-05 1 VY{M(Oxidation (M))|F}{I|L}GEQ 7 3 66.617 0 0 5.5814 0 0 64.00764427550969 290.15049158267817 354.15813585818785 0 0 0 0 0 2.110924374808178 0 0.3054621874040891 1.4361818737241734 VY{M(Oxidation (M))|F}{I|L}GEQ 5.5814 - 297 + NaN NaN 164268 NaN 7994 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10617 51.001 NaN 370410 35 0 87146 0.261 + 35029 YTHEEYISL 9 54 577.7717433010503 1153.5289336689004 2 577.7719116210938 MULTI HCD FTMS 0 0 0 10614 193489.53125 0.7589059372097605 -2 0.04931640625 3 Unmodified _YTHEEYISL_ ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5 46.020951573049366 0.037705236580089195 1 Y{I|L}S{I|L} 4 5 49.993 0 0 4.3339 0 0 659.2540961314805 0 659.2540961314805 0 35.79471529200781 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + Y{I|L}S{I|L} 4.3339 + + 71 NaN NaN 140153 NaN 7995 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10618 51.004 NaN 451540 35 0 106290 0.261 -1 MPKWFLCL 8 75 527.2682695706105 NaN 0 527.2822265625 PEAK HCD FTMS 0 0 0 10614 16791.52734375 0.7688182129871858 2 -0.055850982666015625 4 Oxidation (M) _M(Oxidation (M))PKWFLCL_ ENST00000336415.8_1_1:243349322-243349403:-|nuORF 14.581692164780916 0.38795613832665576 1 {I|L}N[YT]PV 6 -1 13.377 0 0 1.271 0 0 131.066602035298 231.07721887760002 362.14382091289804 0 0 0 0 0 0.4247425010840047 0 0.6989700043360187 0 {I|L}N[YT]PV 1.271 - 268 + NaN NaN 155146 NaN 7996 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10619 51.008 NaN 195000 35 0 33993 0.261 + -1 SVDMLHVL 8 36 465.23988132108406 NaN 0 465.23992919921875 PEAK HCD FTMS 0 0 0 10614 115365.9140625 1 0 0 5 Oxidation (M) _SVDM(Oxidation (M))LHVL_ REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF 14.581692164780916 0.38795613832665576 1 V 1 -1 11.99 0 0 1.2913 0 0 131.09489798376734 695.2808247468204 826.3757227305878 0 0 0 0 0 0.5 0 0 0 V 1.2913 + + 10 + NaN NaN 110882.3 NaN 7997 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10620 51.011 NaN 260930 35 0 29797 0.261 + 13020 KYITDVVKL 9 59 539.8289299874173 1077.6433070416344 2 539.828857421875 MULTI HCD FTMS 0 0 0 10614 98846.34375 0.1529562973303419 8 -0.23006439208984375 6 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 35.61225514009592 0.08548698421724198 1 VVK{I|L} 4 5 31.229 0 0 2.8979 0 0 620.3148060529312 0 620.3148060529312 0 6.307969835171292 0 0 0 0.7742275032520141 0 0 0 + VVK{I|L} 2.8979 + + 49 NaN NaN 123096.9 NaN 7998 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10621 51.014 NaN 248250 35 0 20662 0.261 -1 MYINEVERL 9 63 591.7945036894375 1181.574454445675 2 592.2803344726562 MULTI HCD FTMS 0 0 0 10614 17345.083984375 0.44801711172667247 -5 0.1481475830078125 7 Oxidation (M) _M(Oxidation (M))YINEVERL_ ENSG00000152104|ENST00000366956|PTPN14 24.990960013464015 0.14443998892849796 1 T{M(Oxidation (M))|F}HAT 5 -1 24.97 0 0 2.1133 0 0 164.1072178691665 457.17539392642817 621.2826117955947 0 0 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F}HAT 2.1133 - 129 + NaN NaN 138127.2 NaN 7999 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10622 51.018 NaN 325590 35 0 42858 0.263 + -1 CMELSTCCFF 10 51 452.1692632148798 1353.4859602448394 3 452.5038757324219 MULTI HCD FTMS 0 0 0 10614 38424.9296875 0.36187355253808956 -4 0.12187576293945312 8 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))MELSTC(Carbamidomethyl (C))C(Carbamidomethyl (C))FF_ REV__ENST00000486743.1_1_7:143682974-143683349:+|nuORF 0.776531954647913 0.4711933975711956 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.0328 0 0 1188.4071313647596 0 1188.4071313647596 0 6.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0328 + + 13 + NaN NaN 131585.8 NaN 8000 2620 10614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10624 51.023 NaN 319080 35 0 72924 0.327 + 19177 NIDVREPEL 9 64 542.7851398424846 1083.555726751769 2 542.7850952148438 MULTI HCD FTMS 0 0 0 10623 153618.71875 0.5064934998029994 -3 0.07889938354492188 1 Unmodified _NIDVREPEL_ ENSG00000153201|ENST00000283195|RANBP2 53.31671820480216 0.026930930319421505 1 {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L} 9 0 + 75.426 0 0 6.9609 6.9609 90.378 0 0 0 31.78232262599692 66.44628247688722 31.78232262599692 9.208187539523763 0 2.120371515030528 2 0 0.6139829889124311 + + {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}DV[VG]E[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}R[Y{M(Oxidation (M))|F}]{I|L};[EP][KS]RE[EP]{I|L};{[QN]|[E{I|L}]|[KN]}[QA]RE[EP]{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[Y{M(Oxidation (M))|F}]{I|L} 6.9609;6.1111;3.8931;2.3984;2.1936;0.95212 +;-;-;-;-;- + 176 NaN NaN 143268.6 NaN 8001 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10625 51.027 NaN 316060 35 0 35310 0.261 + 11094 IYHQVAVQF 9 75 552.7966719835546 1103.578791033909 2 552.7955322265625 MULTI HCD FTMS 0 0 0 10623 36127.609375 0.29872997251934436 -7 0.21073532104492188 2 Unmodified _IYHQVAVQF_ ENSG00000076555|ENST00000338432|ACACB;ENSG00000278540|ENST00000616317|ACACA;ENST00000538526.5_3_12:109697932-109704164:+|nuORF;nc|ENSG00000076555|O00763-2|ACACB;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 25.399314129420986 0.14091189997036632 1 AVQ{M(Oxidation (M))|F} 4 5 39.483 0 0 3.5777 0 0 640.3341541974625 0 640.3341541974625 0 19.30523450795789 0 0 0 1.055462187404089 0 0 0 + AVQ{M(Oxidation (M))|F} 3.5777 + + 308 NaN NaN 127909.6 NaN 8002 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10626 51.03 NaN 337320 35 0 21938 0.261 + -1 FPRYCMTL 8 75 523.743039977953 1045.471527022706 2 523.7431030273438 MULTI HCD FTMS 0 0 0 10623 45455.26953125 0.4908853439418511 3 -0.0854644775390625 3 Oxidation (M) _FPRYCM(Oxidation (M))TL_ REV__ENST00000356721.3_1_16:48396017-48396254:-|nuORF 8.593279151180031 0.5292430274356741 1 [{M(Oxidation (M))|F}V]D[HT]ADE{I|L} 9 -1 + 38.54 0 0 3.6863 3.6863 59.767 0 0 0 0 16.478174818886373 0 0 0 0 1.0457574905606752 0 0 [{M(Oxidation (M))|F}V]D[HT]ADE{I|L};[YT]P[HT]ADE{I|L} 3.6863;3.6863 -;- 178 NaN NaN 135675.9 NaN 8003 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10627 51.034 NaN 119810 35 0 11448 0.261 + 24790 RYPDRITLI 9 54 573.8350666957131 1145.655580458226 2 573.8352661132812 MULTI HCD FTMS 0 0 0 10623 50715.65234375 0.02154029375959617 47 -1.3616714477539062 4 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 8.155526934196011 0.2891920862272901 1 RY 2 7 14.949 0 0 1.3048 0 0 0 823.4686554937695 823.4686554937695 7.95880017344075 0 0 0 0 0 0 0 0 + RY 1.3048 + + 28 + NaN NaN 102192.1 NaN 8004 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10628 51.037 NaN 236020 35 0 53913 0.262 + 15084 LMCPFGLR 8 48 468.7426037817916 935.4706546303833 2 468.74310302734375 MULTI HCD FTMS 0 0 0 10623 49160.87109375 0.5442699307799048 -3 0.07889938354492188 5 Unmodified _LMCPFGLR_ REV__ENST00000514665.1_1_4:120141358-120141406:+|nuORF 6.354104778181461 0.5325651638111438 1 GV{I|L} 3 -1 24.693 0 0 2.6396 0 0 648.2880726544937 0 648.2880726544937 0 11.593793813122062 0 0 0 0 0 0 0 GV{I|L} 2.6396 - 26 NaN NaN 143034.3 NaN 8005 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10629 51.04 NaN 121480 35 0 8658.8 0.261 -1 YPEGFEIHSM 10 52 613.2633828160687 1224.5122126989372 2 613.2626342773438 MULTI HCD FTMS 0 0 0 10623 44593.30859375 0.1312352054292735 31 -0.9043922424316406 6 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 36.12702656103203 0.1790159924230938 1 YTN{[ES]|[DT]|[{I|L}C]}Q{I|L} 7 -1 34.843 0 0 2.8454 0 0 0 386.11310754947505 386.11310754947505 20.590088361946428 0 0 0 0 0.8807196863200843 0 0.3494850021680094 0.2742275032520141 YTN{[ES]|[DT]|[{I|L}C]}Q{I|L} 2.8454 - 85 + NaN NaN 104511.1 NaN 8006 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10630 51.044 NaN 213200 35 0 28512 0.264 + 4793 EYVEKFYRI 9 65 416.2203591694848 1245.6392481086546 3 416.22027587890625 MULTI HCD FTMS 0 0 0 10623 21832.248046875 0.5219015798081281 3 -0.0854644775390625 7 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 8.97624648632007 0.2828035605319045 1 {I|L}EV[C(Carbamidomethyl (C))N] 5 8 24.08 0 0 1.9332 0 0 612.3540516584 0 612.3540516584 0 10.981362441963327 0 0 0 0 0 0.4247425010840047 0 {I|L}EV[C(Carbamidomethyl (C))N] 1.9332 - 26 NaN NaN 116545.1 NaN 8007 2621 10623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10632 51.049 NaN 3361500 35 0 711180 0.327 + 10791 ISQPQEPEL 9 82 520.7664353640528 1039.5183177949054 2 520.7666625976562 MULTI HCD FTMS 0 0 0 10631 1836111.125 0.7798529475786627 2 -0.05919647216796875 1 Unmodified _ISQPQEPEL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 128.93241758739586 0.0006697181619526092 1 [EP][KA]QEPE{I|L} 9 4 + 93.011 0 0 8.9475 8.9475 90.084 0 0 0 14.347105889690965 63.54303111733195 14.347105889690965 4.476212463643421 0 1.8807196863200843 1.5228787452803376 1.086696871556164 1.0994850021680094 [EP][KA]QEPE{I|L};[EP]Q[KA]EPE{I|L};[EP][KA][AG]EPE{I|L};[EP][AG][KA]EPE{I|L};N[{I|L}T]PQEPE{I|L};[TP]{[QV]|[N{I|L}]|[RA]|[KV]}QEPE{I|L};[EP]Q{[QS]|[NT]}{I|L}PE{I|L};[EP]Q{I|L}{[QS]|[NT]}PE{I|L};[EP]{I|L}Q{[QS]|[NT]}PE{I|L};{[QN]|[E{I|L}]|[KN]}P[DV]EPE{I|L} 8.9475;8.5169;8.0617;7.3673;7.3039;7.0235;6.8749;6.8749;6.6111;6.3291 -;-;-;-;-;-;-;-;-;- 761 NaN NaN 607705.8 NaN 8008 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10633 51.053 NaN 338870 35 0 75782 0.261 + 16065 LPSPAIDHEQL 11 66 610.3195722082341 1218.6245914832682 2 610.3198852539062 MULTI HCD FTMS 0 0 0 10631 160983.46875 0.6833088650390078 2 -0.05919647216796875 2 Unmodified _LPSPAIDHEQL_ ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 62.78007862980855 0.028938133146045417 1 {I|L}PS[PA]{I|L}DH 8 3 68.581 0 0 5.6278 0 0 0 385.1724032037719 385.1724032037719 57.61230030668848 0 0 0 0 2.548455006504028 0 1.274227503252014 0 + {I|L}PS[PA]{I|L}DH 5.6278 + + 176 + NaN NaN 152947.3 NaN 8009 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10634 51.057 NaN 757850 35 0 132270 0.261 + 8577 HAVIQEYML 9 85 560.2786811148007 1118.5428092964014 2 560.2787475585938 MULTI HCD FTMS 0 0 0 10631 263778.625 0.4623096917528629 -6 0.17772674560546875 3 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 81.89019881105858 0.005240739447516426 1 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 62.686 0 0 5.6043 5.6043 83.887 0 0 0 3.1702408682765792 16.478174818886373 3.1702408682765792 3.1702408682765792 0 2.0682503180159344 0 0.8882104921644451 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V{[DA]|[EG]}[{I|L}A]Y{M(Oxidation (M))|F}{I|L};[Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V[VP]{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}CE{I|L};[VP][HV]A{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};[HA]V[YG]DVV{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[SA]|[TG]}[HS]{I|L}CE{I|L};{[QN]|[E{I|L}]|[KN]}[HN][YV]{M(Oxidation (M))|F}VV 5.6043;5.3208;4.0278;3.5328;3.4679;2.4542;2.3846;2.3708;2.0614;1.8458 +;-;-;-;-;-;-;-;-;- + 919 NaN NaN 202531.3 NaN 8010 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10635 51.06 NaN 643950 35 0 58377 0.261 -1 GLCCRTLL 8 86 496.754899610324 991.495246287448 2 496.7551574707031 MULTI HCD FTMS 0 0 0 10631 285468.96875 0.5890421099336798 -3 0.07551193237304688 4 2 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))C(Carbamidomethyl (C))RTLL_ ENST00000525064.5_2_11:77348755-77348803:-|nuORF 32.116972079565 0.3321965280364247 1 TPEQQAA 7 -1 47.3 0 0 4.7705 0 0 0 263.1372469537719 263.1372469537719 12.377976111936775 0 0 0 0 1.110924374808178 1.2218487496163564 0 0 TPEQQAA 4.7705 - 637 + NaN NaN 180865 NaN 8011 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10636 51.063 NaN 320190 35 0 72006 0.261 + 30693 VPEQSAVTL 9 45 472.2584391076817 942.5023252821634 2 472.2585144042969 MULTI HCD FTMS 0 0 0 10631 128180.203125 0.19155596853633194 -6 0.17772674560546875 5 Unmodified _VPEQSAVTL_ ENSG00000165283|ENST00000356493|STOML2;nc|ENSG00000165283|Q9UJZ1-2|STOML2 26.268140514670165 0.13340543277302316 1 AVT{I|L} 4 5 45.745 0 0 4.8536 0 0 540.2560902326187 0 540.2560902326187 0 45.26084705832169 0 0 0 1 0 0.3807196863200844 0 + AVT{I|L} 4.8536 + + 42 NaN NaN 137125.7 NaN 8012 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10637 51.067 NaN 291760 35 0 16755 0.261 + 29909 VFDPVQKTL 9 79 523.7974466168771 1045.580340300554 2 523.7969970703125 MULTI HCD FTMS 0 0 0 10631 39944.73828125 0.6732233701798841 1 -0.02956390380859375 6 Unmodified _VFDPVQKTL_ ENSG00000149480|ENST00000278823|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant 22.65808497894818 0.16459551161911185 1 DD{I|L} 3 7 28.672 0 0 2.7422 0 0 684.417038310186 0 684.417038310186 0 1.8393875331894094 0 0 0 0.8494850021680094 0 0 0 DD{I|L} 2.7422 - 255 NaN NaN 131331.1 NaN 8013 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10638 51.07 NaN 164790 35 0 26206 0.261 + 5021 FDEDERWTNN 10 50 442.5183984884718 1324.5333660656154 3 442.5184631347656 MULTI HCD FTMS 0 0 0 10631 32466.0234375 0.499025521607122 -2 0.055850982666015625 7 Unmodified _FDEDERWTNN_ ENSG00000196611|ENST00000315274|MMP1 0.6976657623105312 0.47161084886498755 1 T{M(Oxidation (M))|F} 2 9 20.969 0 0 1.5831 0 0 1058.4065788115122 0 1058.4065788115122 0 13.521825181113625 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5831 - 19 + NaN NaN 108135 NaN 8014 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10639 51.073 NaN 84115 35 0 7701 0.261 + 2716 DVLNIQGVQR 10 41 571.3197026179873 1140.6248523027746 2 571.3198852539062 MULTI HCD FTMS 0 0 0 10631 48353.8203125 1 0 0 8 Unmodified _DVLNIQGVQR_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 49.52724829834842 0.07950882623896251 1 [DV]{I|L}N{I|L}QRQR 9 2 [DV] + + 56.771 3.7236 1.7392 4.9772 4.9772 61.58 0 0 0 0 48.81182901342207 0 0 0 2.004432191740108 0 0 0.5 [DV]{I|L}N{I|L}QRQR 4.9772 - 111 + NaN NaN 97807.3 NaN 8015 2622 10631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10641 51.078 NaN 1363100 35 0 196100 0.327 + 10664 IPVHDGYVL 9 84 506.77673469534295 1011.5389164574859 2 506.7766418457031 MULTI HCD FTMS 0 0 0 10640 816421.9375 0.7335551467879522 -2 0.0558319091796875 1 Unmodified _IPVHDGYVL_ ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A 81.61307344734483 0.005330412723537057 1 [{I|L}P]VHDGYV{I|L} 9 0 + 50.396 0 0 4.9821 4.9821 83.67 0 0 0 4.9561303784624755 15.375240784723374 4.9561303784624755 4.9561303784624755 0 1.524227503252014 0 0.5010912013506126 0 + + [{I|L}P]VHDGYV{I|L};[{I|L}V]PHDGYV{I|L};{I|L}PVHT[TP]T{M(Oxidation (M))|F};{I|L}PV[{I|L}T][HD]A{M(Oxidation (M))|F};[{I|L}V][HD]PGYV{I|L};{I|L}[{I|L}T]H{I|L}D[PG]{M(Oxidation (M))|F};{I|L}[{I|L}T]{[{M(Oxidation (M))|F}D]|MM}RT{M(Oxidation (M))|F};[{I|L}P][DG][HV]YV{I|L};[{I|L}V][HD][YG]PV{I|L};{I|L}[{I|L}T][RD]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.9821;4.4921;3.9555;2.8232;2.6328;1.979;1.6867;1.3926;1.2002;1.1698 +;-;-;-;-;-;-;-;-;- + 1233 NaN NaN 308516.2 NaN 8016 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10642 51.083 NaN 1125700 35 0 202960 0.261 + 31916 VYNSEYYHF 9 86 611.2642547658187 1220.5139565984373 2 611.2642822265625 MULTI HCD FTMS 0 0 0 10640 604000.8125 0.6120142206987187 -2 0.0558319091796875 2 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 191.38036244623 2.972967745938989E-13 1 VYNSEYYH{M(Oxidation (M))|F} 9 0 + 121.25 0 0 9.9345 9.9345 92.155 0 0 0 98.50501891384965 9.137342758552691 9.137342758552691 7.319393642848482 0 2.778659694992122 2 1.1989700043360187 0.6861818737241735 + + VYNSEYYH{M(Oxidation (M))|F};VYGGSEYYH{M(Oxidation (M))|F};[YV]NSEYYH{M(Oxidation (M))|F};[YV]GGSEYYH{M(Oxidation (M))|F};[YN]VSEYYH{M(Oxidation (M))|F};[NS][YV]EYYH{M(Oxidation (M))|F};VYGYYD{[SA]|[TG]}H{M(Oxidation (M))|F};[NS]{NN|[MP]|[D{I|L}]|[EV]}YYYH{M(Oxidation (M))|F};VYGY{[CA]|SS}{[WT]|[RM]}C(Carbamidomethyl (C))V;{[{M(Oxidation (M))|F}H]|[RQ]}Y{[HG]|PP}NYH{M(Oxidation (M))|F} 9.9345;9.3348;8.9725;7.3276;6.6775;5.4715;5.4087;4.2566;4.0153;1.8446 +;-;+;-;-;-;-;-;-;- + 2143 + NaN NaN 267818.8 NaN 8017 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10643 51.086 NaN 568030 35 0 78224 0.261 + 12720 KYAMMFAEL 9 82 568.261457088658 1134.5083612441158 2 568.2618408203125 MULTI HCD FTMS 0 0 0 10640 247944.375 0.8207847473581013 -1 0.02956390380859375 3 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 43.77239144664712 0.04802738721622131 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 5 4 47.479 0 0 4.185 0 0 509.2301502912125 0 509.2301502912125 0 20.783409326844264 0 0 0 1.4476212463643423 0 0.3054621874040891 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 4.185 + + 1002 NaN NaN 176473.1 NaN 8018 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10644 51.09 NaN 231770 35 0 80427 0.262 + 1979 DAQADEAVL 9 52 466.2219043691971 930.4292558051942 2 466.221923828125 MULTI HCD FTMS 0 0 0 10640 141073.5625 0.5604427821182617 -5 0.13473129272460938 4 Unmodified _DAQADEAVL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF 43.77239144664712 0.04802738721622131 1 DEAV{I|L} 5 4 56.568 0 0 6.0798 0 0 385.1585865705094 0 385.1585865705094 0 35.59894379144197 0 0 0 1.6861818737241734 0 0.3252574989159953 0 + DEAV{I|L} 6.0798 + + 53 NaN NaN 124248.6 NaN 8019 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10645 51.093 NaN 370540 35 0 34244 0.261 + 15440 LPDKYNLTI 9 66 538.8025603713243 1075.5905678094484 2 538.80322265625 MULTI HCD FTMS 0 0 0 10640 36730.078125 0.572761772365373 5 -0.14464950561523438 5 Unmodified _LPDKYNLTI_ REV__ENSG00000100225|ENST00000266087|FBXO7 8.155526934196011 0.2891920862272901 1 {I|L}P 2 -1 17.474 0 0 1.6246 0 0 0 862.4327486627561 862.4327486627561 2.3045926004576955 0 0 0 0 0 0 0 0 {I|L}P 1.6246 + + 142 + NaN NaN 156415 NaN 8020 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10646 51.096 NaN 220880 35 0 23417 0.261 + -1 KYIIPVPMK 9 69 552.8265804525581 1103.6386079719161 2 552.8316650390625 MULTI HCD FTMS 0 0 0 10640 41700.59375 0.9849310972305758 -1 0.02956390380859375 6 Oxidation (M) _KYIIPVPM(Oxidation (M))K_ REV__tr|U7SIS5|U7SIS5_FUSNUCRISPR-associatedendoribonucleasecas6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02168PE=4SV=1 20.453626601364224 0.18364154288633264 1 E{I|L}MPK{M(Oxidation (M))|F} 6 -1 31.508 0 0 2.8549 0 0 340.2860821924224 0 340.2860821924224 0 11.559640787890544 0 0 0 0 0 0 0.6549471895720984 E{I|L}MPK{M(Oxidation (M))|F} 2.8549 - 292 + NaN NaN 114614.3 NaN 8021 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10647 51.1 NaN 106950 35 0 20293 0.261 -1 DTSSLPTVIMR 11 39 618.3186619583374 1234.6227709834748 2 618.3193969726562 MULTI HCD FTMS 0 0 0 10640 19668.4765625 0.4920058683498598 -1 0.02956390380859375 7 Oxidation (M) _DTSSLPTVIM(Oxidation (M))R_ ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13 7.101721422024254 0.3877749288398915 1 {I|L} 1 -1 9.732 0 0 0.78825 0 0 390.13761580944976 728.3772598828913 1118.514875692341 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.78825 + + 26 + NaN NaN 104745.9 NaN 8022 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10648 51.103 NaN 192380 35 0 40148 0.263 + 14916 LLCLGRMF 8 54 476.7585101510346 951.5024673688692 2 476.7578430175781 MULTI HCD FTMS 0 0 0 10640 36875.25 0.6514153697102187 -3 0.08541488647460938 8 Unmodified _LLCLGRMF_ REV__ENST00000275262.11_1_6:163986120-163986207:+|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}{I|L}SW 4 -1 26.938 0 0 2.8311 0 0 0 449.1991060846313 449.1991060846313 19.948500216800937 0 0 0 0 0 0 0 0 {I|L}{I|L}SW 2.8311 - 10 + NaN NaN 105502.2 NaN 8023 2623 10640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10650 51.108 NaN 894660 35 0 118360 0.327 + 18581 MVSDEYEQL 9 68 565.2396314481397 1128.4647099630793 2 565.2396240234375 MULTI HCD FTMS 0 0 0 10649 518564.9375 0.42927081319869353 -3 0.0854644775390625 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 1 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 72.643 0 0 6.4373 6.4373 88.714 0 0 0 4.194699959806982 38.67570457547339 4.194699959806982 9.208187539523749 0 2.1307196863200843 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}QY{M(Oxidation (M))|F}DSD{I|L};[Q{I|L}]EY{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[SA]|[TG]}CSD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};[YE]Q{I|L}{M(Oxidation (M))|F}DSD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L} 6.4373;5.6213;4.7801;4.5988;4.5558;4.5129;4.4976;4.4523;4.2891;4.204 +;-;-;-;-;-;-;-;-;- + 539 NaN NaN 225091.7 NaN 8024 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10651 51.112 NaN 1093800 35 0 438840 0.261 -1 YTKCHNSN 8 84 512.2194269753037 1022.4243010174074 2 512.2195434570312 MULTI HCD FTMS 0 0 0 10649 379740.03125 0.9581382267370003 -2 0.05919647216796875 2 Carbamidomethyl (C) _YTKC(Carbamidomethyl (C))HNSN_ ENSG00000081479|ENST00000649046|LRP2 14.838274106304384 0.4846187982323419 1 NNENNSN 7 -1 46.292 0 0 4.5277 0 0 218.12652785468907 0 218.12652785468907 0 21.230720160372698 0 0 0 0 0 0.6747425010840047 0.3494850021680094 NNENNSN 4.5277 - 724 NaN NaN 249045.3 NaN 8025 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10652 51.116 NaN 599150 35 0 108510 0.261 + 28123 TILDYLSDFVL 11 70 433.5676283446035 1297.6810556340106 3 433.567626953125 MULTI HCD FTMS 0 0 0 10649 188161.328125 0.5302665158017975 3 -0.08870697021484375 3 Unmodified _TILDYLSDFVL_ REV__ENSG00000124181|ENST00000685551|PLCG1;REV__ENST00000465571.2_1_20:39794900-39795514:+|nuORF;REV__nc|ENSG00000124181|P19174|PLCG1 7.0370850670814 0.388058401935362 1 {I|L}V{I|L} 3 -1 33.94 0 0 2.6154 0 0 954.4347241339747 0 954.4347241339747 0 -0.3737673202475946 -0.3737673202475946 0 0 0.9247425010840047 0 0 0 {I|L}V{I|L} 2.6154 - 21 NaN NaN 185770.4 NaN 8026 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10653 51.119 NaN 369660 35 0 31933 0.261 + 11243 IYLHDCIW 8 80 531.7574375122567 1061.5003220913134 2 531.75732421875 MULTI HCD FTMS 0 0 0 10649 117195.359375 0.3958458082370727 5 -0.15124130249023438 4 Unmodified _IYLHDCIW_ ENST00000558286.5_1_15:51634073-51676155:+|nuORF 42.96799951952854 0.1928021754174411 1 {I|L}SQ 3 7 40.292 0 0 3.7957 0 0 0 730.303015233177 730.303015233177 16.034539788859945 0 0 0 0 0.6307196863200843 1 0.3807196863200844 0 {I|L}SQ 3.7957 - 150 + NaN NaN 148925.5 NaN 8027 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10654 51.123 NaN 248080 35 0 23702 0.261 + 35322 YWMHVQNTF 9 63 621.2742868178269 1240.5340207024537 2 621.2742309570312 MULTI HCD FTMS 0 0 0 10649 137781.6875 0.3958201382484301 11 -0.32881927490234375 5 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 71.92227651296345 0.008466197542043549 1 {M(Oxidation (M))|F}C(Carbamidomethyl (C))VQNT{M(Oxidation (M))|F} 7 3 55.738 0 0 4.493 0 0 326.12373549629064 0 326.12373549629064 0 41.010943018241385 0 0 0 1.305462187404089 0 0 0.4247425010840047 {M(Oxidation (M))|F}C(Carbamidomethyl (C))VQNT{M(Oxidation (M))|F} 4.493 - 793 NaN NaN 133975.9 NaN 8028 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10655 51.126 NaN 281440 35 0 15299 0.261 + 34254 YPDRIMNTF 9 69 586.7737018509798 1171.5328507687595 2 586.7735595703125 MULTI HCD FTMS 0 0 0 10649 104055.4453125 0.025987638176977045 101 -2.7439804077148438 6 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 62.86856922530385 0.01356854487378719 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 58.734 0 0 5.0134 5.0134 83.035 0 0 0 3.484681129510527 3.484681129510527 3.484681129510527 3.484681129510527 0 1.809894379144197 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}[QA]Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPY[QA]Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRP[WP]E{I|L};[{M(Oxidation (M))|F}T][WP][HK]DE{I|L} 5.0134;4.716;4.5224;4.2274;3.93;3.7364;2.7292;2.2381;1.5325;0.69356 +;+;-;-;-;-;-;-;-;- + 951 NaN NaN 123980 NaN 8029 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10656 51.129 NaN 285460 35 0 25539 0.261 + -1 STSLCCLYM 9 79 547.222339151749 1092.430125370298 2 547.2222290039062 MULTI HCD FTMS 0 0 0 10649 127383.5546875 0.5942881388068222 3 -0.08870697021484375 7 Carbamidomethyl (C),Oxidation (M) _STSLC(Carbamidomethyl (C))CLYM(Oxidation (M))_ REV__ENSG00000198626|ENST00000366574|RYR2;REV__nc|ENSG00000198626|Q92736-2|RYR2 7.910154910731844 0.2910521888787154 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H 3 -1 21.427 0 0 1.9614 0 0 0 718.2383888803166 718.2383888803166 0.45757490560674796 0 0 0 0 0 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H 1.9614 - 188 NaN NaN 131303.7 NaN 8030 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10657 51.133 NaN 448260 35 0 49363 0.261 -1 VPAEELVEM 9 82 516.7494123841241 1031.484271835048 2 516.749267578125 MULTI HCD FTMS 0 0 0 10649 132121.3125 1 0 0 8 Oxidation (M) _VPAEELVEM(Oxidation (M))_ ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12 32.30548876998284 0.10066689432505688 1 VE{M(Oxidation (M))|F} 3 -1 45.947 0 0 4.4545 0 0 638.3286989337583 0 638.3286989337583 0 33.639829889124314 0 0 0 1.5 0 0.7134679910804405 0 VE{M(Oxidation (M))|F} 4.4545 + + 189 + NaN NaN 165209.3 NaN 8031 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10658 51.136 NaN 226460 35 0 16853 0.261 + 8340 GYIEDLKKF 9 67 556.8028035869431 1111.5910542406862 2 556.802978515625 MULTI HCD FTMS 0 0 0 10649 128220.8125 1 0 0 9 Unmodified _GYIEDLKKF_ ENSG00000069849|ENST00000286371|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF;nc|ENSG00000069849|P54709-2|ATP1B3 61.60191391372663 0.015340508911304802 1 [YG]{I|L}ED{I|L}KK{M(Oxidation (M))|F} 9 0 + 96.78 0 0 8.7064 8.7064 95.936 0 0 0 75.85954265312188 14.09256854528806 14.09256854528806 23.010299956639813 0 2.344187677400525 2 0.3494850021680094 0 + + [YG]{I|L}ED{I|L}KK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]ED{I|L}KK{M(Oxidation (M))|F};[YG][WQ]RKK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EY[VG]KK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YG]D{I|L}KK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}DKK{I|L}[YG]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}DKK{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};[RH]K[VG][NS]{I|L}{[DS]|[MA]|[CV]|TT};{[QN]|[E{I|L}]|[KN]}EY{I|L}{I|L}[VS]{M(Oxidation (M))|F} 8.7064;6.6364;4.4273;2.6462;1.7913;1.3661;1.0953;0.91534;0.86757 +;-;-;-;-;-;-;-;- + 529 + NaN NaN 129141.8 NaN 8032 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10659 51.139 NaN 277870 35 0 25476 0.261 + 12909 KYGIVQEF 8 58 492.2634303789444 982.5123078246888 2 492.26336669921875 MULTI HCD FTMS 0 0 0 10649 106494.2734375 0.8586162986885619 -1 0.029632568359375 10 Unmodified _KYGIVQEF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 71.92227651296345 0.02747593350207697 1 [YK]{[VA]|[{I|L}G]}VQE{M(Oxidation (M))|F} 8 0 + 58.677 0 0 5.9722 5.9722 88.664 0 0 0 1.6946999598069823 49.72479721008234 1.6946999598069823 9.262137858390815 0 2.1237125054200234 0 0 0.805462187404089 + + [YK]{[VA]|[{I|L}G]}VQE{M(Oxidation (M))|F};[YK]{[VA]|[{I|L}G]}V[AG]E{M(Oxidation (M))|F} 5.9722;5.0295 +;- + 83 NaN NaN 127491.9 NaN 8033 2624 10649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10661 51.144 NaN 4342000 35 0 1046200 0.327 + 28383 TPEQQAAIL 9 39 485.7638279150556 969.5131028969112 2 485.7639465332031 MULTI HCD FTMS 0 0 0 10660 3929514.75 0.9970294115594844 1 -0.019561767578125 1 Unmodified _TPEQQAAIL_ ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF 57.72198328787511 0.020768266150574023 1 QQAA{I|L}{I|L} 6 3 70.706 0 0 7.293 0 0 327.14680678535314 0 327.14680678535314 0 44.76403468139864 0 0 0 2.4247425010840047 0 0 0.3807196863200844 + QQAA{I|L}{I|L} 7.293 + + 69 NaN NaN 585115.9 NaN 8034 2625 10660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10662 51.149 NaN 1011000 35 0 263460 0.261 + 27939 TEPHLLAL 8 85 447.25798347915634 892.5014140251127 2 447.2579650878906 MULTI HCD FTMS 0 0 0 10660 470147.125 1 0 0 2 Unmodified _TEPHLLAL_ ENSG00000108950|ENST00000592554|FAM20A;ENST00000226094.9_1_17:66533620-66538255:-|nuORF 49.66892048692302 0.12981580074710167 1 TA{I|L} 3 5 41.867 0 0 4.691 0 0 589.3202965756515 0 589.3202965756515 0 26.918402966525576 0 0 0 1 0 0.805462187404089 0 TA{I|L} 4.691 - 63 NaN NaN 246305.8 NaN 8035 2625 10660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10663 51.152 NaN 299270 35 0 20948 0.261 + 22944 QYVDFHNQL 9 83 582.2776253827192 1162.5406978322383 2 582.2775268554688 MULTI HCD FTMS 0 0 0 10660 167126.421875 0.1373439664600053 7 -0.200531005859375 3 Unmodified _QYVDFHNQL_ ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 118.0683919894846 0.0016252157255221692 1 MPVD{M(Oxidation (M))|F}HNQ{I|L} 9 2 57.588 0 0 4.9536 0 0 63.029734225511056 0 63.029734225511056 0 18.025071148396712 0 0 0 1.6688265215345564 0 0 2.2104093769761874 MPVD{M(Oxidation (M))|F}HNQ{I|L} 4.9536 - 2673 + NaN NaN 130590.6 NaN 8036 2625 10660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10664 51.155 NaN 231200 35 0 25810 0.261 + 35323 YWMHVQNTF 9 56 621.2742868178269 1240.5340207024537 2 621.2742309570312 MULTI HCD FTMS 0 0 0 10660 147176.28125 0.4228089889758741 12 -0.3452491760253906 4 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 92.4914307365334 0.004460681868130716 1 VQNT{M(Oxidation (M))|F} 5 4 51.81 0 0 4.1765 0 0 633.2382069318375 0 633.2382069318375 0 30.154856465551987 0 0 0 1.1989700043360187 0 0 0.4247425010840047 + VQNT{M(Oxidation (M))|F} 4.1765 + + 348 NaN NaN 123834.4 NaN 8037 2625 10660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10665 51.159 NaN 364490 35 0 25818 0.261 + 35768 YYMIGEQKF 9 72 597.7789038085 NaN 0 597.7786865234375 PEAK HCD FTMS 0 0 0 10660 120435 0.49276903331131555 7 -0.200531005859375 5 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 53.40400417844725 0.037784916695607525 1 Y{M(Oxidation (M))|F}{I|L}WQ 5 5 34.38 0 0 2.8805 0 0 163.06108239619635 290.1507662408813 453.21184863707765 0 0 0 0 0 1.7302046884880937 0 0 0 Y{M(Oxidation (M))|F}{I|L}WQ 2.8805 - 203 + NaN NaN 146739 NaN 8038 2625 10660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10667 51.164 NaN 441310 35 0 115480 0.327 + 19178 NIDVREPEL 9 67 542.7851398424846 1083.555726751769 2 542.7853393554688 MULTI HCD FTMS 0 0 0 10666 237120.359375 0.781805249201694 2 -0.059246063232421875 1 Unmodified _NIDVREPEL_ ENSG00000153201|ENST00000283195|RANBP2 61.08992128646608 0.016056751534446034 1 {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L} 9 0 + 84.904 0 0 7.8357 7.8357 91.172 0 0 0 28.52974763683696 79.41992052842137 28.52974763683696 9.208187539523749 0 2.305462187404089 2 0 0.899649864804614 + + {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}DV[VG]E[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}DV[VS][NP]N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}R[Y{M(Oxidation (M))|F}]{I|L};{[QN]|[E{I|L}]|[KN]}[QA]RE[EP]{I|L};[EP][KS]RE[EP]{I|L};[EP]{I|L}{[QG]|[NA]}[NS]{I|L}N{I|L};{[QN]|[E{I|L}]|[KN]}P{[QG]|[NA]}[NS]{I|L}N{I|L};{[QN]|[E{I|L}]|[KN]}P{[QG]|[NA]}[NS]VQ{I|L};[EP]{I|L}{[QG]|[NA]}[NS]VQ{I|L} 7.8357;6.9859;5.2868;4.8464;3.4174;3.4174;1.5088;1.5088;1.1415;1.1415 +;-;-;-;-;-;-;-;-;- + 269 NaN NaN 155524.6 NaN 8039 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10668 51.168 NaN 786620 35 0 67337 0.261 + 33423 YGSRLDYFQ 9 96 574.771658418407 1147.528763903614 2 575.270263671875 MULTI HCD FTMS 0 0 0 10666 267448.6875 0.429432249885998 -11 0.3189659118652344 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 1 PC(Carbamidomethyl (C))NAT{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 10 10 49.809 0 0 4.3405 0 0 51.06760412476735 0 51.06760412476735 0 14.450214375402105 0 0 0 2.0356668758921828 0 0.6549471895720984 0.6694451763165201 PC(Carbamidomethyl (C))NAT{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 4.3405 - 3481 + NaN NaN 211119.6 NaN 8040 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10669 51.172 NaN 303180 35 0 76438 0.261 + 9364 HPSVDSSVLL 10 58 527.282336924734 1052.5501209162678 2 527.2822875976562 MULTI HCD FTMS 0 0 0 10666 135844.59375 0.6027231352944198 2 -0.059246063232421875 3 Unmodified _HPSVDSSVLL_ ENSG00000134107|ENST00000256495|BHLHE40 13.90604991867851 0.3810395177745597 1 V{I|L}{I|L} 3 7 28.188 0 0 2.678 0 0 709.3072987287125 0 709.3072987287125 0 7.66589350960075 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 2.678 + + 115 NaN NaN 129921.7 NaN 8041 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10670 51.175 NaN 310140 35 0 44189 0.261 + 2046 DEFEYCWDTF 10 49 452.1692632148798 1353.4859602448394 3 452.1692810058594 MULTI HCD FTMS 0 0 0 10666 118747.015625 0.6942990313280164 2 -0.059246063232421875 4 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 0.6976657623105312 0.47161084886498755 1 T{M(Oxidation (M))|F} 2 8 16.198 0 0 1.1968 0 0 1087.3599054126112 0 1087.3599054126112 0 10.511525224473813 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.1968 + + 14 + NaN NaN 120447.7 NaN 8042 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10671 51.178 NaN 335810 35 0 149370 0.261 + 14202 LAQQPPDA 8 50 420.2164660404411 838.4183791476822 2 420.21630859375 MULTI HCD FTMS 0 0 0 10666 91835.1328125 0.9739472826011306 2 -0.059246063232421875 5 Unmodified _LAQQPPDA_ ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2 11.640296217721598 0.50814828952472 1 {I|L}A{M(Oxidation (M))|F} 3 6 21.682 0 0 2.5861 0 0 0 504.22333704166255 504.22333704166255 3.5834938564822494 0 0 0 0 0 0 0 0 {I|L}A{M(Oxidation (M))|F} 2.5861 - 15 + NaN NaN 135041.2 NaN 8043 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10672 51.182 NaN 243800 35 0 24541 0.261 -1 IPLRSSWVM 9 65 552.7966719835546 1103.578791033909 2 552.7971801757812 MULTI HCD FTMS 0 0 0 10666 84601.7109375 0.6995499348190373 -2 0.0557708740234375 6 Oxidation (M) _IPLRSSWVM(Oxidation (M))_ ENSG00000078369|ENST00000378609|GNB1;ENSG00000111664|ENST00000229264|GNB3;ENSG00000114450|ENST00000232564|GNB4;ENSG00000172354|ENST00000303210|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;nc|ENSG00000078369|P62873-2|GNB1;nc|ENSG00000111664|P16520-2|GNB3 33.4449034751529 0.0954363425218424 1 AWV{M(Oxidation (M))|F} 4 -1 39.285 0 0 3.5597 0 0 582.3478472856654 0 582.3478472856654 0 11.064921830680703 0 0 0 1.4247425010840047 0 0 0 AWV{M(Oxidation (M))|F} 3.5597 - 155 + NaN NaN 133600.9 NaN 8044 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10673 51.185 NaN 120390 35 0 14413 0.261 -1 EYMEHTYLI 9 42 607.7735672422352 1213.5325815512704 2 607.7738647460938 MULTI HCD FTMS 0 0 0 10666 72481.609375 1 0 0 7 Oxidation (M) _EYM(Oxidation (M))EHTYLI_ ENSG00000141447|ENST00000319481|OSBPL1A;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant 18.13498045792455 0.20367413111508956 1 {I|L}{I|L} 2 -1 21.454 0 0 1.7679 0 0 969.3575810928828 0 969.3575810928828 0 14.463950151760656 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.7679 + + 6 NaN NaN 107552.2 NaN 8045 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10674 51.188 NaN 377000 35 0 29702 0.262 -1 0 85 498.53071451767954 1990.0937522043182 4 498.5299072265625 MULTI HCD FTMS 0 0 0 10666 28973.4140625 0.42809106621495785 18 -0.539703369140625 8 NaN NaN 1 YQT{[QG]|[NA]}NK 7 -1 35.45 0 0 1.7813 0 0 0 1167.6062807799474 1167.6062807799474 19.96539467890493 0 0 0 0 0.4247425010840047 0 0 0.4247425010840047 YQT{[QG]|[NA]}NK 1.7813 - 94 + NaN NaN 141943.3 NaN 8046 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10675 51.192 NaN 353760 35 0 73193 0.261 -1 0 67 488.11045696948713 2922.6190830173227 6 488.1095886230469 MULTI HCD FTMS 0 0 0 10666 16727.521484375 0.40357183953840514 1 -0.03293609619140625 9 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 0.39669 0 0 2757.5405440542354 0 2757.5405440542354 0 5.81969221163689 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.39669 - 37 + NaN NaN 135769.8 NaN 8047 2626 10666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10677 51.197 NaN 836510 35 0 128960 0.327 + 10792 ISQPQEPEL 9 58 520.7664353640528 1039.5183177949054 2 520.766357421875 MULTI HCD FTMS 0 0 0 10676 290495.15625 0.12338224020013315 7 -0.20383834838867188 1 Unmodified _ISQPQEPEL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 55.50274090549119 0.023872834264864425 1 {[QN]|[E{I|L}]|[KN]}PDVE[EP]{I|L} 9 4 + 39.683 0 0 3.8175 3.8175 81.907 0 0 0 4.771212547196626 7.688324713653081 4.771212547196626 4.771212547196626 0 0.9247425010840047 0 0.3807196863200844 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}PDVE[EP]{I|L};[EP]Q[KA]E[EP]{I|L};{[QN]|[E{I|L}]|[KN]}PE[DV][EP]{I|L};[EP]{I|L}D[NP]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[EP]{I|L}E[QP]{[QS]|[NT]}{I|L};[EP]Q[DP]V{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};{[QN]|[E{I|L}]|[KN]}PD[NP]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};{[QN]|[E{I|L}]|[KN]}PE[QP]{[QS]|[NT]}{I|L} 3.8175;3.3585;1.8947;0.59104;0.49781;0.43869;0.13205;0.038828 -;-;-;-;-;-;-;- 139 NaN NaN 216236.9 NaN 8048 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10678 51.201 NaN 360120 35 0 66328 0.261 + -1 DCDPSYHEC 9 64 591.6951121210338 1181.3756713088676 2 591.6952514648438 MULTI HCD FTMS 0 0 0 10676 119128.59375 1 0 0 2 2 Carbamidomethyl (C) _DC(Carbamidomethyl (C))DPSYHEC(Carbamidomethyl (C))_ REV__COL11A1|p.I509Sfs*19|1|0.36|ENSG00000060718|chr1:103014559-103014559|G/-|frameshift_variant;REV__ENSG00000060718|ENST00000370096|COL11A1;REV__ENSG00000130635|ENST00000371817|COL5A1;REV__nc|ENSG00000060718|P12107-2|COL11A1;REV__nc|ENSG00000060718|P12107-3|COL11A1;REV__nc|ENSG00000060718|P12107-4|COL11A1;REV__nc|ENSG00000130635|P20908-2|COL5A1 0.5247636613948944 0.34703895399870666 1 YEQ{I|L} 4 -1 33.716 0 0 2.854 0 0 630.116991111525 0 630.116991111525 0 16.52494727195545 0 0 0 0.6549471895720984 0 0 0 YEQ{I|L} 2.854 - 134 NaN NaN 137455.5 NaN 8049 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10679 51.205 NaN 140610 35 0 22931 0.261 -1 YILFMCVR 8 45 530.769018996595 1059.52348505999 2 530.7694091796875 MULTI HCD FTMS 0 0 0 10676 27351.59765625 0.12049784856031585 5 -0.14803314208984375 3 Oxidation (M) _YILFM(Oxidation (M))CVR_ ENSG00000197535|ENST00000399233|MYO5A;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A 14.581692164780916 0.48650662947107914 1 [Y{I|L}]{I|L} 3 -1 38.512 0 0 3.6349 0 0 0 667.2691973258059 667.2691973258059 26.82975913172342 0 0 0 0 0.805462187404089 2 0 0 [Y{I|L}]{I|L} 3.6349 + + 24 + NaN NaN 100978.2 NaN 8050 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10680 51.208 NaN 236900 35 0 61834 0.261 + -1 VPPWPCPI 8 65 483.24940880719896 964.4842646811979 2 483.24920654296875 MULTI HCD FTMS 0 0 0 10676 66356.3125 0.7971052127024306 -3 0.08870697021484375 4 Carbamidomethyl (C) _VPPWPC(Carbamidomethyl (C))PI_ REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant 17.086550045450526 0.4680768486079041 1 VPEQ 4 -1 44.819 0 0 4.647 0 0 0 508.23713098697505 508.23713098697505 16.371286223603583 0 0 0 0 0.5891368308784531 1.3010299956639813 0 0 VPEQ 4.647 - 114 + NaN NaN 123808 NaN 8051 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10681 51.211 NaN 254580 35 0 25303 0.261 + 10402 INRKRLWNF 9 56 416.24340486525745 1245.7083851959724 3 416.5778503417969 MULTI HCD FTMS 0 0 0 10676 7577.9814453125 0.2209224907227878 1 -0.026309967041015625 5 Unmodified _INRKRLWNF_ ENSG00000157181|ENST00000287859|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4 2.498486711656943 0.33207666356665205 1 VEK{M(Oxidation (M))|F} 4 7 18.928 0 0 1.5194 0 0 292.1745128220106 447.23703943424067 739.4115522562513 0 0 0 0 0 0 0 0 0 VEK{M(Oxidation (M))|F} 1.5194 - 45 + NaN NaN 134266.4 NaN 8052 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10682 51.215 NaN 148740 35 0 14386 0.261 + 13021 KYITDVVKL 9 57 539.8289299874173 1077.6433070416344 2 539.829833984375 MULTI HCD FTMS 0 0 0 10676 37237.65625 0.05762210118429459 15 -0.44745635986328125 6 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 10.150570793230772 0.27265765907388223 1 KY{I|L} 3 6 18.416 0 0 1.7089 0 0 0 670.3781832330686 670.3781832330686 11.962724883926658 0 0 0 0 0 0 0 0 + KY{I|L} 1.7089 + + 11 + NaN NaN 110474.7 NaN 8053 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10683 51.218 NaN 96593 35 0 7473.9 0.261 + 25747 SKYEEMYPPE 10 44 636.7777099609375 NaN 0 636.7777099609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SKYEEMYPPE_ ENSG00000134057|ENST00000256442|CCNB1;nc|ENSG00000134057|P14635-2|CCNB1 1.6526216038709556 0.33876987398426067 1 Q 1 10 3.9794 0 0 0.31296 0 0 379.1867343732436 761.2738131158811 1140.4605474891248 0 0 0 0 0 0 0 0 0 Q 0.31296 - 1 + NaN NaN 97854 NaN 8054 2627 10676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10685 51.223 NaN 1251900 35 0 177550 0.327 + 10665 IPVHDGYVL 9 77 506.77673469534295 1011.5389164574859 2 506.7766418457031 MULTI HCD FTMS 0 0 0 10684 723497 0.6500620863530422 3 -0.08874893188476562 1 Unmodified _IPVHDGYVL_ ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A 54.773552608820026 0.024892918755467567 1 [{I|L}P]VHDGYV{I|L} 9 0 + 54.146 0 0 5.3528 5.3528 91.407 0 0 0 14.532796692927263 33.17660892640149 14.532796692927263 43.83790617034251 0 1.0924778212679485 1.3010299956639813 0.5138793319624578 0 + + [{I|L}P]VHDGYV{I|L};[{I|L}P]VHD[{I|L}V][YG];[HT][{I|L}V]D[{I|L}P]A{M(Oxidation (M))|F};[{I|L}P]VHV{NN|[MP]|[D{I|L}]|[EV]}[YG];[HT]{NN|[MP]|[D{I|L}]|[EV]}V[{I|L}P]A{M(Oxidation (M))|F} 5.3528;1.019;1.0008;0.72143;0.70319 +;-;-;-;- + 584 NaN NaN 281499.4 NaN 8055 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10686 51.227 NaN 1075100 35 0 200410 0.261 + 31917 VYNSEYYHF 9 74 611.2642547658187 1220.5139565984373 2 611.2642211914062 MULTI HCD FTMS 0 0 0 10684 705835.9375 0.7152004141223105 3 -0.08874893188476562 2 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 206.74871869215147 9.242385646021313E-18 1 VYNSEYYH{M(Oxidation (M))|F} 9 0 + 122.2 0 0 10.012 10.012 91.579 0 0 0 7.768024924119672 7.768024924119672 7.768024924119672 5.8534811358448735 0 2.798455006504028 2 1.1989700043360187 0.7614393726401688 + + VYNSEYYH{M(Oxidation (M))|F};VYGGSEYYH{M(Oxidation (M))|F};[YV]NSEYYH{M(Oxidation (M))|F};[YV]NESYYH{M(Oxidation (M))|F};[YV]GGSEYYH{M(Oxidation (M))|F};[YN]VSEYYH{M(Oxidation (M))|F};[YV]GGESYYH{M(Oxidation (M))|F};[YN]VESYYH{M(Oxidation (M))|F};[NS][YV]EYYH{M(Oxidation (M))|F};VYGYYD{[SA]|[TG]}H{M(Oxidation (M))|F} 10.012;9.5328;9.376;8.1646;7.3633;7.081;6.1519;5.8696;5.7307;5.1862 +;-;+;-;-;-;-;-;-;- + 3065 + NaN NaN 260968.6 NaN 8056 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10687 51.231 NaN 979370 35 0 237250 0.263 + 30694 VPEQSAVTL 9 50 472.2584391076817 942.5023252821634 2 472.25830078125 MULTI HCD FTMS 0 0 0 10684 669152.75 1 0 0 3 Unmodified _VPEQSAVTL_ ENSG00000165283|ENST00000356493|STOML2;nc|ENSG00000165283|Q9UJZ1-2|STOML2 66.45667989310934 0.010234776021261575 1 [{I|L}T]YYAVT 7 6 58.561 0 0 6.2134 0 0 0 128.07148023628397 128.07148023628397 45.27326425138098 0 0 0 0 1.8494850021680094 1.3979400086720375 1.1861818737241734 0 [{I|L}T]YYAVT 6.2134 - 137 NaN NaN 232697.6 NaN 8057 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10688 51.234 NaN 1190300 35 0 273080 0.261 + 8578 HAVIQEYML 9 89 560.2786811148007 1118.5428092964014 2 560.2789306640625 MULTI HCD FTMS 0 0 0 10684 570566.9375 1 0 0 4 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 71.92227651296345 0.008466197542043549 1 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 66.022 0 0 5.9025 5.9025 91.026 0 0 0 4.762036441594191 46.868128451160516 4.762036441594191 21.52307744142373 0 2.0924778212679485 0 0.6747425010840047 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V{[DA]|[EG]}[{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V[VP]{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};[Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[VP]{[C(Carbamidomethyl (C))G]|[NC]}K{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F}{I|L};[Q{I|L}]{[WN]|[YH]}{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}[EP][WK]{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[SA]|[TG]}[HS]{I|L}{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NP][NG]{I|L}{M(Oxidation (M))|F}VV 5.9025;3.9783;3.2763;3.037;2.6022;2.4217;1.5936;1.108;0.95689;0.81841 +;-;-;-;-;-;-;-;-;- + 903 NaN NaN 264208.4 NaN 8058 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10689 51.238 NaN 550540 35 0 58072 0.261 -1 GLCCRTLL 8 85 496.754899610324 991.495246287448 2 496.75482177734375 MULTI HCD FTMS 0 0 0 10684 264550.4375 0.5458784139348879 3 -0.08874893188476562 5 2 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))C(Carbamidomethyl (C))RTLL_ ENST00000525064.5_2_11:77348755-77348803:-|nuORF 18.13498045792455 0.4603629008820478 1 TPEQQAA 7 -1 47.482 0 0 4.7889 0 0 0 263.1379793756469 263.1379793756469 17.788887483787462 0 0 0 0 1.0629529932484498 1.2218487496163564 0 0 TPEQQAA 4.7889 - 460 + NaN NaN 177644.4 NaN 8059 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10690 51.241 NaN 573390 35 0 87186 0.261 + 12721 KYAMMFAEL 9 80 568.261457088658 1134.5083612441158 2 568.26171875 MULTI HCD FTMS 0 0 0 10684 262055.703125 0.8674983011137184 4 -0.12172317504882812 6 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 51.629811660486645 0.02929079705179888 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 6 3 58.078 0 0 5.1192 0 0 362.1949940412125 0 362.1949940412125 0 29.150378042405904 0 0 0 1.9361818737241734 0 0.3054621874040891 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 5.1192 + + 570 NaN NaN 172426.1 NaN 8060 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10691 51.244 NaN 518420 35 0 51033 0.261 + 10585 IPMDPEHVEL 10 83 598.2873144875527 1194.5600760419054 2 598.2886352539062 MULTI HCD FTMS 0 0 0 10684 160079.84375 0.7159372489311197 -3 0.07880783081054688 7 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 47.594388314883695 0.08653821083322558 1 {I|L}{M(Oxidation (M))|F}PD[EP]HVE{I|L} 10 2 + 47.585 0 0 3.9834 3.9834 81.116 0 0 0 14.832207359188672 1.3712195372670877 1.3712195372670877 2.7815125038364386 0 1.6861818737241734 0 1.305462187404089 0 {I|L}{M(Oxidation (M))|F}PD[EP]HVE{I|L};{I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L};{[QN]|[E{I|L}]|[KN]}[YG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPE{I|L};{I|L}{M(Oxidation (M))|F}DD{[QN]|[E{I|L}]|[KN]}CVE{I|L};[C(Carbamidomethyl (C))K]{[DA]|[EG]}{I|L}[{M(Oxidation (M))|F}T]VE{I|L};[C(Carbamidomethyl (C))K]{[DS]|[MA]|[CV]|TT}P[{M(Oxidation (M))|F}T]VE{I|L};[C(Carbamidomethyl (C))K]{[DS]|[MA]|[CV]|TT}{[QN]|[E{I|L}]|[KN]}CVE{I|L} 3.9834;3.7506;2.6809;1.7074;1.0412;0.64178;0.056651 -;+;-;-;-;-;- + 645 + NaN NaN 163361.7 NaN 8061 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10692 51.248 NaN 163800 35 0 19413 0.261 + -1 FDTDEMEQL 9 53 572.2291665430754 1142.4437801529507 2 572.2297973632812 MULTI HCD FTMS 0 0 0 10684 50908.3125 0.5205830485661298 -3 0.07880783081054688 8 Oxidation (M) _FDTDEM(Oxidation (M))EQL_ REV__ENST00000404589.7_1_3:58487368-58487425:+|nuORF 30.636539890814138 0.10832830463492794 1 EQ{I|L} 3 -1 39.253 0 0 3.4358 0 0 754.248827049025 0 754.248827049025 0 31.46082806091883 0 0 0 0.9247425010840047 0 0.3807196863200844 0 EQ{I|L} 3.4358 + + 46 NaN NaN 108520.6 NaN 8062 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10693 51.251 NaN 258320 35 0 38857 0.261 + 14480 LFADLNIRS 9 57 524.793084907417 1047.5716168816339 2 524.7925415039062 MULTI HCD FTMS 0 0 0 10684 80870.2109375 1 0 0 9 Unmodified _LFADLNIRS_ REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF 32.78568957990786 0.09846250359632436 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}SVQR 9 -1 + 50.671 0 0 4.837 4.837 89.643 0 0 0 3.748162098248997 8.648481219398079 3.748162098248997 26.35274404843592 0 2.2346368802282015 0 0 0.3252574989159953 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}SVQR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}ASVQR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[DA]|[EG]}Q{[VA]|[{I|L}G]}{I|L}{I|L}YR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[SG]QR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}QR;{[DA]|[EG]}[AG]{[VA]|[{I|L}G]}{I|L}{I|L}YR 4.837;2.3214;2.1083;1.4399;1.2961;0.72772;0.56091 -;-;-;-;-;-;- 313 + NaN NaN 117131.6 NaN 8063 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10694 51.254 NaN 160630 35 0 10850 0.261 + 2580 DTLEGSMAQL 10 63 532.7476781133288 1063.4808032934575 2 532.7483520507812 MULTI HCD FTMS 0 0 0 10684 27436.796875 0.31860387686987257 8 -0.2401275634765625 10 Unmodified _DTLEGSMAQL_ ENSG00000070159|ENST00000374541|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;nc|ENSG00000070159|P26045-3|PTPN3 15.248480904072842 0.3684828712757339 1 {[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{I|L} 9 4 + 32.113 0 0 3.0196 3.0196 79.934 0 0 0 1.760912590556817 15.659387198976596 1.760912590556817 1.760912590556817 0 0.5 0 0 0 {[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{I|L};{[ES]|[DT]|[{I|L}C]}WP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{I|L};{[QN]|[E{I|L}]|[KN]}[CG]P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[AG]{I|L};{[ES]|[DT]|[{I|L}C]}WP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[AG]{I|L};{[QN]|[E{I|L}]|[KN]}A{[DA]|[EG]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{I|L};{[ES]|[DT]|[{I|L}C]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EEAQ{I|L};{[QN]|[E{I|L}]|[KN]}[HM]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}Q{I|L};{[QN]|[E{I|L}]|[KN]}SE[WC(Carbamidomethyl (C))]Q{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))P[{M(Oxidation (M))|F}V]{[WN]|[YH]} 3.0196;2.854;2.1538;2.1538;1.9882;1.7051;1.4651;1.379;1.3245;0.25163 -;-;-;-;-;-;-;-;-;- 96 NaN NaN 108884.3 NaN 8064 2628 10684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10696 51.259 NaN 1688100 35 0 212770 0.327 + 18582 MVSDEYEQL 9 80 565.2396314481397 1128.4647099630793 2 565.2396240234375 MULTI HCD FTMS 0 0 0 10695 1118340.875 0.9257685241100369 2 -0.052524566650390625 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 1 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 73.056 0 0 6.4739 6.4739 88.781 0 0 0 4.774619429583851 37.28248354110105 4.774619429583851 9.208187539523749 0 2.113982988912431 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}QY{M(Oxidation (M))|F}DSD{I|L};[Q{I|L}]EY{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{M(Oxidation (M))|F}DSD{I|L};[YE]Q{I|L}{M(Oxidation (M))|F}DSD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}[AG]Y{M(Oxidation (M))|F}DSD{I|L} 6.4739;5.6579;4.9466;4.7652;4.7472;4.5183;4.4882;4.2644;4.2405;4.1306 +;-;-;-;-;-;-;-;-;- + 829 NaN NaN 342538.5 NaN 8065 2629 10695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10697 51.264 NaN 202110 35 0 87953 0.262 + 1980 DAQADEAVL 9 38 466.2219043691971 930.4292558051942 2 466.221923828125 MULTI HCD FTMS 0 0 0 10695 182331.609375 0.7243485782548741 1 -0.022945404052734375 2 Unmodified _DAQADEAVL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF 29.84058131909904 0.11198220037953927 1 DEAV{I|L} 5 4 55.93 0 0 6.0112 0 0 385.1593495099625 0 385.1593495099625 0 47.85789402675583 0 0 0 1.6549471895720984 0 0.3807196863200844 0 + DEAV{I|L} 6.0112 + + 37 NaN NaN 118007.9 NaN 8066 2629 10695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10698 51.267 NaN 445850 35 0 173680 0.261 -1 YTKCHNSN 8 63 512.2194269753037 1022.4243010174074 2 512.2195434570312 MULTI HCD FTMS 0 0 0 10695 113064.984375 0.2852790717863226 3 -0.08549880981445312 3 Carbamidomethyl (C) _YTKC(Carbamidomethyl (C))HNSN_ ENSG00000081479|ENST00000649046|LRP2 10.073929032068715 0.5196730168178844 1 M{[DS]|[MA]|[CV]|TT}NEA[{I|L}P]{M(Oxidation (M))|F} 9 -1 + 27.413 0 0 2.6811 2.6811 87.499 0 0 0 6.443569497791305 2.542644353703526 2.542644353703526 27.412669627871868 0 0 0 0 0 M{[DS]|[MA]|[CV]|TT}NEA[{I|L}P]{M(Oxidation (M))|F} 2.6811 - 265 + NaN NaN 151943.4 NaN 8067 2629 10695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10699 51.271 NaN 313760 35 0 34646 0.261 + 28436 TPIRDGALTL 10 72 528.8059622306591 1055.5973715281182 2 528.8060302734375 MULTI HCD FTMS 0 0 0 10695 111927.4609375 0.6249687007773375 1 -0.022945404052734375 4 Unmodified _TPIRDGALTL_ ENSG00000171806|ENST00000310392|METTL18 51.487983226225225 0.0723780666322865 1 [{I|L}T]PR[DG]A{I|L}T{I|L} 10 2 + 45.735 0 0 4.3326 4.3326 82.324 0 0 0 3.8806755545886773 28.64606053436396 3.8806755545886773 4.304009240123889 0 1.1237125054200234 1.3010299956639813 0.805462187404089 0 [{I|L}T]PR[DG]A{I|L}T{I|L};[{I|L}T]PRT[PG]TT{I|L};[{I|L}T]PRT{[SA]|[TG]}PT{I|L} 4.3326;3.9249;3.7581 -;-;- 177 NaN NaN 127215 NaN 8068 2629 10695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10700 51.274 NaN 549440 35 0 59963 0.261 + 10586 IPMDPEHVEL 10 86 598.2873144875527 1194.5600760419054 2 598.287841796875 MULTI HCD FTMS 0 0 0 10695 171828.15625 0.7684801196248767 -2 0.06253433227539062 5 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 47.594388314883695 0.08653821083322558 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[EP]HVE{I|L} 10 2 + 48.976 0 0 4.0999 4.0999 81.794 0 0 0 0.7648373010427179 20.03083433768431 0.7648373010427179 3.8033376849500584 0 1.4361818737241734 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[EP]HVE{I|L};{I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L};{I|L}{M(Oxidation (M))|F}PD[EP]HVE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[EP]HD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[H{I|L}]DPE{I|L};{[QN]|[E{I|L}]|[KN]}[YG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}[NG][YK]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KA][YN]VE{I|L};{I|L}{M(Oxidation (M))|F}P{[ET]|[MV]}[PG]C(Carbamidomethyl (C)){[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}{M(Oxidation (M))|F}P{[ET]|[MV]}[QA]D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4.0999;3.7815;3.7624;3.5756;3.1699;2.1551;2.0851;1.9591;1.8714;1.8714 -;+;-;-;-;-;-;-;-;- + 919 NaN NaN 171702.8 NaN 8069 2629 10695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10701 51.277 NaN 258620 35 0 19205 0.261 + 22843 QYLSSIQHL 9 59 544.7902523280992 1087.5659517229983 2 544.7903442382812 MULTI HCD FTMS 0 0 0 10695 149253.1875 1 0 0 6 Unmodified _QYLSSIQHL_ ENSG00000034693|ENST00000367591|PEX3 60.07390631473393 0.0174780869009295 1 Q{I|L}SS{I|L}C(Carbamidomethyl (C)){I|L} 7 3 58.682 0 0 5.3957 0 0 268.15327651191564 0 268.15327651191564 0 34.24463109862151 0 0 0 0.6139829889124311 0 0.8252574989159953 0.7614393726401688 Q{I|L}SS{I|L}C(Carbamidomethyl (C)){I|L} 5.3957 - 338 NaN NaN 121640.7 NaN 8070 2629 10695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10703 51.282 NaN 1497000 35 0 369720 0.327 + 28384 TPEQQAAIL 9 46 485.7638279150556 969.5131028969112 2 485.763916015625 MULTI HCD FTMS 0 0 0 10702 1230941.25 0.31232472919252846 6 -0.18095779418945312 1 Unmodified _TPEQQAAIL_ ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF 60.07390631473393 0.0174780869009295 1 QQAA{I|L}{I|L} 6 3 62.925 0 0 6.4903 0 0 327.1439381330094 0 327.1439381330094 0 48.94524706148886 0 0 0 1.9247425010840047 0 0 0.7302046884880937 + QQAA{I|L}{I|L} 6.4903 + + 83 NaN NaN 311739.2 NaN 8071 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10704 51.287 NaN 1522900 35 0 184430 0.261 + 22237 QNNEKNISCV 10 99 574.771658418407 1147.528763903614 2 575.2705688476562 MULTI HCD FTMS 0 0 0 10702 522763.21875 0.8393811436650204 -7 0.20381927490234375 2 Unmodified _QNNEKNISCV_ ENSG00000134389|ENST00000256785|CFHR5 21.536976647645854 0.3096624038397699 1 PC(Carbamidomethyl (C))NAT{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 10 6 67.974 0 0 5.9235 0 0 51.065099506249744 0 51.065099506249744 0 33.16978857241302 0 0 0 2.1549471895720984 0 1.3098943791441968 0.3807196863200844 PC(Carbamidomethyl (C))NAT{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 5.9235 - 4444 + NaN NaN 314193.1 NaN 8072 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10705 51.29 NaN 590420 35 0 76695 0.262 + 21695 QAARSFKR 8 71 482.27911690945996 NaN 0 482.2666931152344 PEAK HCD FTMS 0 0 0 10702 10953.2919921875 0.5942616792680435 1 -0.02957916259765625 3 Unmodified _QAARSFKR_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 9.347437153973935 0.38822285293237185 1 VHNNVP 6 8 21.631 0 0 2.2473 0 0 149.1307843279505 150.06710230045158 299.1978866284021 0 0 0 0 0 0 0 0 0 VHNNVP 2.2473 - 316 + NaN NaN 182418.5 NaN 8073 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10706 51.294 NaN 260880 35 0 13850 0.261 -1 YPDRIMNTF 9 65 586.7737018509798 1171.5328507687595 2 586.7730712890625 MULTI HCD FTMS 0 0 0 10702 71746.703125 0.017918594799185446 107 -2.9243011474609375 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 34.221707139014875 0.09187037853496335 1 R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 6 -1 39.346 0 0 3.3585 0 0 375.1447926251969 0 375.1447926251969 0 2.4345603412206174 0 0 0 0.8807196863200843 0 0.5 0 R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.3585 + + 183 NaN NaN 129291.5 NaN 8074 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10707 51.297 NaN 151490 35 0 9285.2 0.261 + 33374 YGIEKVFKE 9 58 556.8028035869431 1111.5910542406862 2 556.80224609375 MULTI HCD FTMS 0 0 0 10702 19866.634765625 0.15494079610223185 6 -0.18095779418945312 5 Unmodified _YGIEKVFKE_ REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1 9.38312468134398 0.279288223203164 1 [YG]{I|L}E 4 -1 21.872 0 0 1.9676 0 0 0 646.3557833307249 646.3557833307249 2.180475292681269 0 0 0 0 0.4247425010840047 1.0969100130080565 0 0 [YG]{I|L}E 1.9676 + + 146 + NaN NaN 106857.5 NaN 8075 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10708 51.3 NaN 106010 35 0 10891 0.261 + 12910 KYGIVQEF 8 44 492.2634303789444 982.5123078246888 2 492.26348876953125 MULTI HCD FTMS 0 0 0 10702 49412.30859375 0.3983896236385142 5 -0.154632568359375 6 Unmodified _KYGIVQEF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 29.081581746732265 0.3711897268585781 1 VQE{M(Oxidation (M))|F} 4 4 46.542 0 0 4.7371 0 0 461.263475486525 0 461.263475486525 0 45.57319389984244 0 0 0 1.6989700043360187 0 0 0 + VQE{M(Oxidation (M))|F} 4.7371 + + 26 NaN NaN 104294.7 NaN 8076 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10709 51.303 NaN 86276 35 0 19367 0.261 + 22371 QPQPPEQL 8 40 468.7426037817916 935.4706546303833 2 468.7425842285156 MULTI HCD FTMS 0 0 0 10702 29534.1015625 0.32697800212722766 6 -0.18095779418945312 7 Unmodified _QPQPPEQL_ nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18 4.3292370932331545 0.5355693454741696 1 V{I|L} 2 7 18.583 0 0 1.9865 0 0 705.3065052716812 0 705.3065052716812 0 15.088643834802156 0 0 0 0 0 0 0 V{I|L} 1.9865 - 27 NaN NaN 94201.5 NaN 8077 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10710 51.307 NaN 114680 35 0 7103.8 0.261 -1 AYPHNLMTF 9 57 555.2577483138126 1108.5009436944251 2 555.2590942382812 MULTI HCD FTMS 0 0 0 10702 46373.94140625 0.03223904321112372 83 -2.2452735900878906 8 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 24.020572477871973 0.15282392193088168 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E 3 -1 30.19 0 0 2.7235 0 0 0 742.3357880149907 742.3357880149907 2.001962355242952 0 0 0 0 0.4247425010840047 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E 2.7235 - 17 NaN NaN 103018.5 NaN 8078 2630 10702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10712 51.312 NaN 159770 35 0 15583 0.327 + 35324 YWMHVQNTF 9 53 621.2742868178269 1240.5340207024537 2 621.2740478515625 MULTI HCD FTMS 0 0 0 10711 62990.3125 0.18095898413250175 18 -0.5297126770019531 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 81.89019881105858 0.005240739447516426 1 VQNT{M(Oxidation (M))|F} 5 4 49.993 0 0 4.0299 0 0 633.2386952130875 0 633.2386952130875 0 37.75235572984968 0 0 0 1.2302046884880937 0 0 0.4247425010840047 + VQNT{M(Oxidation (M))|F} 4.0299 + + 167 NaN NaN 109444.3 NaN 8079 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10713 51.316 NaN 645180 35 0 143050 0.262 + 10346 ILQKVYDF 8 74 513.2869653462706 1024.559377759341 2 513.2872314453125 MULTI HCD FTMS 0 0 0 10711 181143.640625 0.5421029221821008 -3 0.08874893188476562 2 Unmodified _ILQKVYDF_ tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 15.847184025352803 0.47719562709667024 1 {I|L}{I|L}Q 3 5 30.942 0 0 3.02 0 0 0 667.3120211236936 667.3120211236936 15.368931070804592 0 0 0 0 0.5 1.6989700043360187 0 0 + {I|L}{I|L}Q 3.02 + + 96 + NaN NaN 182708.2 NaN 8080 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10714 51.32 NaN 405100 35 0 149830 0.261 + 24185 RYFENPQVI 9 50 583.3038841826935 1164.593215432187 2 583.3037719726562 MULTI HCD FTMS 0 0 0 10711 148024.453125 0.5730684652268966 -3 0.08874893188476562 3 Unmodified _RYFENPQVI_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 16.149105407346934 0.22083165093524068 1 N[QP]V{I|L} 5 4 33.64 0 0 2.8886 0 0 595.2744007794937 0 595.2744007794937 0 33.64007808576609 0 0 0 1 0 0 0.3807196863200844 + N[QP]V{I|L} 2.8886 + + 29 NaN NaN 154676.5 NaN 8081 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10715 51.323 NaN 264970 35 0 28259 0.264 -1 0 53 433.5676283446035 1297.6810556340106 3 433.5675354003906 MULTI HCD FTMS 0 0 0 10711 33002.1875 0.09300505663861494 10 -0.3028411865234375 4 NaN NaN 1 V{I|L} 2 -1 24.464 0 0 1.8852 0 0 1067.5196099154336 0 1067.5196099154336 0 5.612431371158735 0 0 0 0.3494850021680094 0 0 0 V{I|L} 1.8852 - 11 NaN NaN 127214.7 NaN 8082 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10716 51.326 NaN 109900 35 0 13962 0.261 -1 LPMSDQYVKL 10 35 605.3126605786235 1208.610768224047 2 605.3131103515625 MULTI HCD FTMS 0 0 0 10711 69888.6484375 0.9477952013676777 -6 0.1675567626953125 5 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 18.373094154950223 0.33925629317698053 1 {I|L}P 2 -1 19.464 0 0 1.6104 0 0 0 995.4502047174436 995.4502047174436 8.979400086720375 0 0 0 0 0 0 0 0 {I|L}P 1.6104 + + 12 + NaN NaN 114105.6 NaN 8083 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10717 51.33 NaN 347120 35 0 33168 0.261 + 2677 DVHGPDWHL 9 69 538.2513849822252 1074.4882170312503 2 538.252197265625 MULTI HCD FTMS 0 0 0 10711 72984.4453125 0.015690251700014125 64 -1.8176193237304688 6 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 30.636539890814138 0.10832830463492794 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 3 8 17.447 0 0 1.6238 0 0 0 682.3067545016885 682.3067545016885 -1.0526595187979346 0 -1.0526595187979346 0 0 0 1.3979400086720375 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 1.6238 - 89 NaN NaN 153306.1 NaN 8084 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10718 51.333 NaN 133400 35 0 19659 0.262 + -1 TCYMFLCLVC 10 49 442.5183984884718 1324.5333660656154 3 442.8529052734375 MULTI HCD FTMS 0 0 0 10711 20377.388671875 0.6187235270507996 10 -0.3028411865234375 7 2 Carbamidomethyl (C),Oxidation (M) _TC(Carbamidomethyl (C))YM(Oxidation (M))FLC(Carbamidomethyl (C))LVC_ REV__ENST00000489318.1_1_9:97523006-97535511:+|nuORF 0.776531954647913 0.4711933975711956 1 T{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.4695 0 0 1058.4070976103403 0 1058.4070976103403 0 16.699740308471753 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.4695 - 11 + NaN NaN 99830.6 NaN 8085 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10719 51.336 NaN 55058 35 0 7374.7 0.261 + 21663 PYTDGGGSSL 10 30 477.2131519240169 952.4117509148339 2 477.2138366699219 MULTI HCD FTMS 0 0 0 10711 27757.62109375 0.7382794728112112 6 -0.17769241333007812 8 Unmodified _PYTDGGGSSL_ REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L} 1 -1 3.4949 0 0 0.36695 0 0 384.10603910018386 452.18866907291255 836.2947081730964 0 0 0 0 0 0 0 0 0 {I|L} 0.36695 + + 6 + NaN NaN 86245.5 NaN 8086 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10720 51.34 NaN 144340 35 0 37840 0.261 + -1 LVMEMAFFIF 10 51 421.8765733280575 1262.6078905843724 3 421.8770751953125 MULTI HCD FTMS 0 0 0 10711 13839.234375 0.017870851580597365 50 -1.43359375 9 Oxidation (M) _LVM(Oxidation (M))EMAFFIF_ REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I 3.876331618118854 0.45478566516190344 1 H{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9376 0 0 960.4708189064412 0 960.4708189064412 0 17.01667520279372 0 0 0 0.5 0 0 0 H{M(Oxidation (M))|F} 1.9376 - 12 + NaN NaN 111030 NaN 8087 2631 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10722 51.345 NaN 241340 35 0 36805 0.327 + 2047 DEFEYCWDTF 10 56 452.1692632148798 1353.4859602448394 3 452.1695251464844 MULTI HCD FTMS 0 0 0 10721 81782.1015625 0.4781697762756992 8 -0.23691558837890625 1 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 0.6976657623105312 0.47161084886498755 1 T{M(Oxidation (M))|F} 2 8 15.573 0 0 1.1506 0 0 1087.3601800708143 0 1087.3601800708143 0 10.088643834802156 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.1506 + + 12 + NaN NaN 116774.1 NaN 8088 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10723 51.349 NaN 156120 35 0 18016 0.261 -1 IPLRSSWVM 9 55 552.7966719835546 1103.578791033909 2 552.7972412109375 MULTI HCD FTMS 0 0 0 10721 75538 0.62460442455352 4 -0.11840438842773438 2 Oxidation (M) _IPLRSSWVM(Oxidation (M))_ ENSG00000078369|ENST00000378609|GNB1;ENSG00000111664|ENST00000229264|GNB3;ENSG00000114450|ENST00000232564|GNB4;ENSG00000172354|ENST00000303210|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;nc|ENSG00000078369|P62873-2|GNB1;nc|ENSG00000111664|P16520-2|GNB3 34.93206674587334 0.08860942999206235 1 WV{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.6649 0 0 653.3863541949762 0 653.3863541949762 0 9.190067809585756 0 0 0 1.4247425010840047 0 0 0 WV{M(Oxidation (M))|F} 3.6649 + + 70 NaN NaN 110946.2 NaN 8089 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10724 51.353 NaN 184200 35 0 10528 0.261 + 25488 SFEEKPVYI 9 71 556.2882086638302 1110.5618643944604 2 556.2886352539062 MULTI HCD FTMS 0 0 0 10721 39138.62890625 0.6424028399500568 1 -0.02954864501953125 3 Unmodified _SFEEKPVYI_ ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 40.23920728925047 0.06424668180817725 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEK[VP]Y{I|L} 9 0 + 66.857 0 0 6.0201 6.0201 91.069 0 0 0 2.8207499751527223 2.8207499751527223 2.8207499751527223 20.519155386135346 0 2.3723637474483468 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEK[VP]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{M(Oxidation (M))|F}[{I|L}V]K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}[SG][VP]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT][RK]EC{I|L} 6.0201;4.1725;4.0159;3.3675 +;-;-;- + 207 + NaN NaN 112128 NaN 8090 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10725 51.356 NaN 212530 35 0 16918 0.261 + 14481 LFADLNIRS 9 58 524.793084907417 1047.5716168816339 2 524.8108520507812 MULTI HCD FTMS 0 0 0 10721 48961.8828125 0.6054378026828675 4 -0.11840438842773438 4 Unmodified _LFADLNIRS_ REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF 20.41453444215458 0.18397929046831515 1 [VS]QG{I|L}[R{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]} 9 -1 + 37.118 0 0 3.5433 3.5433 84.946 0 0 0 11.712046717774534 -7.63033184178645 -7.63033184178645 9.208187539523756 0 0.4247425010840047 1.3979400086720375 0.6549471895720984 0 [VS]QG{I|L}[R{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]};[VS][AG]G{I|L}[R{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]};{[DA]|[EG]}Q{[VA]|[{I|L}G]}{I|L}{I|L}[YR];[VS]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{[QN]|[E{I|L}]|[KN]};{[DA]|[EG]}[AG]{[VA]|[{I|L}G]}{I|L}{I|L}[YR];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}[RK]W;[VS]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RK]{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}[RK]{I|L}DA{[QN]|[E{I|L}]|[KN]} 3.5433;2.6643;2.2083;1.3466;1.3293;0.99742;0.65379;0.38778 -;-;-;-;-;-;-;- 139 NaN NaN 122793 NaN 8091 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10726 51.359 NaN 144490 35 0 21546 0.262 + 18773 NAAVGEPAF 9 47 438.21624161445806 874.4179302957161 2 438.2166442871094 MULTI HCD FTMS 0 0 0 10721 74226.015625 1 0 0 5 Unmodified _NAAVGEPAF_ ENSG00000071894|ENST00000616140|CPSF1 29.081581746732265 0.1154664336125038 1 QQV{[DA]|[EG]}[PA]{M(Oxidation (M))|F} 8 3 + 39.71 0 0 4.5413 4.5413 89.323 0 0 0 3.8071968632008435 3.8071968632008435 3.8071968632008435 28.667957836926732 0 1.9247425010840047 0 0 0.3807196863200844 QQV{[DA]|[EG]}[PA]{M(Oxidation (M))|F};QQV[VS][WE] 4.5413;1.2628 -;- 37 NaN NaN 102083.1 NaN 8092 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10727 51.363 NaN 69688 35 0 10365 0.261 + 34128 YNVFCIPQN 9 34 549.2574049411958 1096.5002569491915 2 549.2671508789062 MULTI HCD FTMS 0 0 0 10721 13808.4091796875 0.49855772444776414 11 -0.319122314453125 6 Unmodified _YNVFCIPQN_ REV__ENSG00000139304|ENST00000644991|PTPRQ;REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ 4.3292370932331545 0.3181982124262546 1 [YN]V 3 -1 22.676 0 0 2.068 0 0 0 717.302386426007 717.302386426007 17.191512336730028 0 0 0 0 0 1.5228787452803376 0 0 [YN]V 2.068 + + 7 NaN NaN 95191 NaN 8093 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10728 51.366 NaN 183730 35 0 20168 0.261 + 31874 VYNENLVHMI 10 55 624.3080337249818 1246.6015145167635 2 624.3090209960938 MULTI HCD FTMS 0 0 0 10721 87301.4453125 0.35013286743305005 -6 0.18096923828125 7 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 61.60191391372663 0.03559593591905874 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}V 7 3 58.02 0 0 4.6543 0 0 0 412.16535006113315 412.16535006113315 48.8388041728556 0 0 0 0 1.774227503252014 1.6989700043360187 0.3494850021680094 0.3807196863200844 + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}V 4.6543 + + 62 + NaN NaN 108769 NaN 8094 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10729 51.369 NaN 76993 35 0 8225.1 0.261 -1 HYDYIDVEM 9 40 600.747418191768 1199.480283450336 2 600.747314453125 MULTI HCD FTMS 0 0 0 10721 25200.5859375 0.4346831812608686 8 -0.23691558837890625 8 Oxidation (M) _HYDYIDVEM(Oxidation (M))_ ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1 30.636539890814138 0.10832830463492794 1 {I|L}DVE{M(Oxidation (M))|F} 5 -1 47.206 0 0 3.9356 0 0 578.2096424787125 0 578.2096424787125 0 44.987737688117235 0 0 0 0.9247425010840047 0 0 0 {I|L}DVE{M(Oxidation (M))|F} 3.9356 + + 36 NaN NaN 93540.8 NaN 8095 2632 10721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10731 51.374 NaN 586540 35 0 141180 0.327 + 30695 VPEQSAVTL 9 54 472.2584391076817 942.5023252821634 2 472.2583312988281 MULTI HCD FTMS 0 0 0 10730 383363.53125 0.5729088481665808 5 -0.1414337158203125 1 Unmodified _VPEQSAVTL_ ENSG00000165283|ENST00000356493|STOML2;nc|ENSG00000165283|Q9UJZ1-2|STOML2 51.629811660486645 0.02929079705179888 1 [{I|L}T]YYAVT 7 6 54.754 0 0 5.8094 0 0 0 128.07137178780752 128.07137178780752 43.24880400574919 0 0 0 0 1.8494850021680094 1.3979400086720375 0.805462187404089 0 [{I|L}T]YYAVT 5.8094 - 77 NaN NaN 169419.2 NaN 8096 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10732 51.379 NaN 861450 35 0 191820 0.261 + 8579 HAVIQEYML 9 89 560.2786811148007 1118.5428092964014 2 560.2789916992188 MULTI HCD FTMS 0 0 0 10730 393565.34375 0.6897794419607428 5 -0.1414337158203125 2 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 62.57269311338072 0.013982455292112035 1 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 63.967 0 0 5.7188 5.7188 90.891 0 0 0 4.137342758552691 49.98802998217903 4.137342758552691 23.32831194938163 0 2.0924778212679485 0 0.5941876774005248 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V{I|L}{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{I|L};[HA]V[VP]{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};[HA]V{[DA]|[EG]}[{I|L}A]Y{M(Oxidation (M))|F}{I|L};[Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}[EP][WK]{M(Oxidation (M))|F}VV;[HA]V{I|L}{[DS]|[MA]|[CV]|TT}{[CP]|[EA]}{[YD]|[{M(Oxidation (M))|F}M]};{[QN]|[E{I|L}]|[KN]}[HN][YV]{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SA[HS]{I|L}{M(Oxidation (M))|F}VV 5.7188;3.6332;3.5152;3.1594;2.9769;2.4145;0.83886;0.43407;0.21919;0.19389 +;-;-;-;-;-;-;-;-;- + 691 NaN NaN 212341.6 NaN 8097 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10733 51.382 NaN 396430 35 0 44361 0.261 + 10666 IPVHDGYVL 9 63 506.77673469534295 1011.5389164574859 2 506.7767333984375 MULTI HCD FTMS 0 0 0 10730 184719.96875 0.16597090005444912 8 -0.24031829833984375 3 Unmodified _IPVHDGYVL_ ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A 15.847184025352803 0.2234401846867398 1 H{I|L}{I|L} 3 7 26.198 0 0 2.5899 0 0 630.3019276349625 0 630.3019276349625 0 6.73393743112328 0 0 0 0 0 0 0 H{I|L}{I|L} 2.5899 - 72 NaN NaN 147398.5 NaN 8098 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10734 51.386 NaN 296750 35 0 56218 0.261 + 31918 VYNSEYYHF 9 53 611.2642547658187 1220.5139565984373 2 611.2642822265625 MULTI HCD FTMS 0 0 0 10730 174703.296875 0.17702112294832387 8 -0.24031829833984375 4 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 99.75527289724121 0.004270341300239591 1 VYGGSEYY{[{M(Oxidation (M))|F}H]|[RQ]} 10 2 + 106.83 0 0 8.7531 8.7531 88.6 0 0 0 101.34820009305471 4.884381005764311 4.884381005764311 1.7609125905568135 0 2.416386562212267 2 0.805462187404089 0 VYGGSEYY{[{M(Oxidation (M))|F}H]|[RQ]};VYNSEYY{[{M(Oxidation (M))|F}H]|[RQ]};[YV]NSEYY{[{M(Oxidation (M))|F}H]|[RQ]};[YV]GGSEYY{[{M(Oxidation (M))|F}H]|[RQ]};[YN]VSEYY{[{M(Oxidation (M))|F}H]|[RQ]} 8.7531;8.6088;6.4443;5.1115;4.07 -;+;+;-;- + 480 + NaN NaN 122975.6 NaN 8099 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10735 51.389 NaN 197620 35 0 60075 0.261 + 3394 EEVLIPDQKY 10 31 617.3221613328525 1232.6297697325049 2 617.8220825195312 MULTI HCD FTMS 0 0 0 10730 31780.0078125 0.4042226220883505 -3 0.09210205078125 5 Unmodified _EEVLIPDQKY_ ENSG00000005812|ENST00000355619|FBXL3 30.7034409873982 0.22608124881558994 1 {I|L}{I|L}V[HC] 5 8 32.703 0 0 2.6531 0 0 649.3074651669875 0 649.3074651669875 0 25.713337517843655 0 0 0 1.3494850021680094 0 0 0 {I|L}{I|L}V[HC] 2.6531 - 14 NaN NaN 108555.4 NaN 8100 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10736 51.392 NaN 77812 35 0 9323 0.261 + 13022 KYITDVVKL 9 32 539.8289299874173 1077.6433070416344 2 539.8289184570312 MULTI HCD FTMS 0 0 0 10730 16149.3779296875 0.02498978675995128 21 -0.601776123046875 6 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 2.9952420565917617 0.3283108881486655 1 KY 2 7 16.454 0 0 1.5268 0 0 0 783.4685762994749 783.4685762994749 10.969100130080562 0 0 0 0 0 0 0 0 + KY 1.5268 + + 2 + NaN NaN 98244.5 NaN 8101 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10737 51.396 NaN 63418 35 0 6835.7 0.261 -1 SQESEGKMCFL 11 49 637.77197265625 NaN 0 637.77197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _SQESEGKM(Oxidation (M))CFL_ ENSG00000140326|ENST00000356231|CDAN1;nc|ENSG00000140326|Q8IWY9-1|CDAN1 2.9952420565917617 0.33362350433860827 1 N 1 -1 6.9897 0 0 0.54972 0 0 265.09601093574366 889.3269137018186 1154.4229246375623 0 0 0 0 0 0 0 0 0 N 0.54972 - 2 + NaN NaN 94978.7 NaN 8102 2633 10730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10739 51.401 NaN 885260 35 0 109840 0.327 + 18583 MVSDEYEQL 9 62 565.2396314481397 1128.4647099630793 2 565.23974609375 MULTI HCD FTMS 0 0 0 10738 527309.625 0.4365097120189468 7 -0.21406173706054688 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 103.35351024395868 0.004027461563756449 1 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 66.38 0 0 5.8824 5.8824 87.785 0 0 0 4.436974992327123 30.6008695517813 4.436974992327123 9.208187539523749 0 1.8494850021680094 0 1.2302046884880937 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}QY{[{M(Oxidation (M))|F}D]|MM}SD{I|L};[Q{I|L}]EY{[{M(Oxidation (M))|F}D]|MM}SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{[{M(Oxidation (M))|F}D]|MM}SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{[{M(Oxidation (M))|F}D]|MM}SD{I|L};[YE]Q{I|L}{[{M(Oxidation (M))|F}D]|MM}SD{I|L};{[QN]|[E{I|L}]|[KN]}[AG]Y{[{M(Oxidation (M))|F}D]|MM}SD{I|L} 5.8824;5.0664;4.6841;3.7309;3.4239;3.2035;3.1606;2.9616;2.7378;2.6079 +;-;-;-;-;-;-;-;-;- + 384 NaN NaN 217977.5 NaN 8103 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10740 51.405 NaN 562540 35 0 66489 0.261 + 12722 KYAMMFAEL 9 82 568.261457088658 1134.5083612441158 2 568.2616577148438 MULTI HCD FTMS 0 0 0 10738 209002.453125 0.6918730287203593 10 -0.3029289245605469 2 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 53.832793166522166 0.026208976789938845 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 6 3 46.121 0 0 4.0653 0 0 362.1945057599625 0 362.1945057599625 0 6.877756852626497 0 0 0 1.524227503252014 0 0.2742275032520141 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 4.0653 + + 444 NaN NaN 177414.2 NaN 8104 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10741 51.409 NaN 873040 35 0 96796 0.261 + 24379 RYIPTAAAF 9 93 505.276884993559 1008.539217053918 2 505.2767639160156 MULTI HCD FTMS 0 0 0 10738 226307.453125 0.031443052141020014 26 -0.7498321533203125 3 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 32.78568957990786 0.09846250359632436 1 AAA{M(Oxidation (M))|F} 4 5 38.549 0 0 3.8223 0 0 630.3527699201187 0 630.3527699201187 0 11.409532376941542 0 0 0 1.2887254899964358 0 0 0 + AAA{M(Oxidation (M))|F} 3.8223 + + 445 NaN NaN 224819.8 NaN 8105 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10742 51.412 NaN 374700 35 0 36643 0.261 + 10587 IPMDPEHVEL 10 80 598.2873144875527 1194.5600760419054 2 598.2874755859375 MULTI HCD FTMS 0 0 0 10738 150445.171875 0.6728473738103392 3 -0.0889129638671875 4 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 49.55428908609986 0.07941048486997417 1 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 7 5 48.357 0 0 4.0481 0 0 0 356.0923250787719 356.0923250787719 22.670400629279335 0 0 0 0 1.089136830878453 0 0.75 0 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 4.0481 - 380 + NaN NaN 138261.4 NaN 8106 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10743 51.415 NaN 523430 35 0 37617 0.261 + 31314 VWPGEGREL 9 84 521.7694557425187 1041.5243585518374 2 521.7693481445312 MULTI HCD FTMS 0 0 0 10738 143581.796875 0.11402759692606634 -6 0.17752838134765625 5 Unmodified _VWPGEGREL_ REV__ENSG00000189420|ENST00000338647|ZFP92 21.74664581756881 0.17247014374749275 1 N[R{M(Oxidation (M))|F}]{I|L} 4 -1 15.723 0 0 1.5096 0 0 493.2271900861344 0 493.2271900861344 0 7.31160860001042 0 0 0 0 0 0 0.7742275032520141 N[R{M(Oxidation (M))|F}]{I|L} 1.5096 - 200 NaN NaN 165989 NaN 8107 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10744 51.419 NaN 354170 35 0 56087 0.261 + 8936 HPDPTRLLL 9 56 531.3087630578174 1060.6029731824347 2 531.30908203125 MULTI HCD FTMS 0 0 0 10738 60559 0.7425392382153161 -3 0.08877944946289062 6 Unmodified _HPDPTRLLL_ ENSG00000183751|ENST00000568546|TBL3 21.536976647645854 0.1742816388551942 1 HPD 3 6 29.481 0 0 2.7797 0 0 0 708.4417266137561 708.4417266137561 1.856734291156954 0 0 0 0 0.805462187404089 0 0 0 + HPD 2.7797 + + 92 + NaN NaN 140604.1 NaN 8108 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10745 51.422 NaN 77269 35 0 7830.5 0.261 + -1 FDTDEMEQL 9 42 572.2291665430754 1142.4437801529507 2 572.2294311523438 MULTI HCD FTMS 0 0 0 10738 36951.8984375 0.3778662264418951 3 -0.0889129638671875 7 Oxidation (M) _FDTDEM(Oxidation (M))EQL_ REV__ENST00000404589.7_1_3:58487368-58487425:+|nuORF 13.042465956692817 0.2476723265019929 1 EQ{I|L} 3 -1 36.198 0 0 3.1685 0 0 754.249315330275 0 754.249315330275 0 31.593793813122062 0 0 0 1 0 0 0 EQ{I|L} 3.1685 + + 44 NaN NaN 96911.2 NaN 8109 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10746 51.425 NaN 195080 35 0 24373 0.264 + 4794 EYVEKFYRI 9 53 416.2203591694848 1245.6392481086546 3 416.2204284667969 MULTI HCD FTMS 0 0 0 10738 21080.708984375 0.5039359803350857 15 -0.4409332275390625 8 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 3.5870582119611467 0.32382448100160255 1 EV[C(Carbamidomethyl (C))N] 4 7 16.198 0 0 1.3004 0 0 725.4222100132123 0 725.4222100132123 0 1.593793813122062 0 0 0 0 0 0 0 EV[C(Carbamidomethyl (C))N] 1.3004 - 11 NaN NaN 118438.2 NaN 8110 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10747 51.429 NaN 103950 35 0 7883.6 0.261 -1 MPMQDIKMIL 10 37 634.3084623760404 1266.6023718188808 2 634.8108520507812 MULTI HCD FTMS 0 0 0 10738 12440.21484375 0.43848435655345275 2 -0.06259918212890625 9 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 2.498486711656943 0.462078817294651 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 13.188 0 0 1.0412 0 0 747.2925892560562 0 747.2925892560562 0 8.58349385648225 0 0 0 0 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.0412 + + 4 NaN NaN 104328.6 NaN 8111 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10748 51.432 NaN 70760 35 0 6599.6 0.261 -1 QDKYECHFF 9 39 637.2689963875462 1272.5234398418922 2 637.2693481445312 MULTI HCD FTMS 0 0 0 10738 12177.6376953125 0.17087149539369545 20 -0.5755195617675781 10 Carbamidomethyl (C) _QDKYEC(Carbamidomethyl (C))HFF_ ENSG00000198502|ENST00000374975|HLA-DRB5 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94460.7 NaN 8112 2634 10738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10750 51.437 NaN 1987900 35 0 309180 0.327 + 21684 QAAPDLHVL 9 84 482.2666516414659 962.5187503497318 2 482.2666015625 MULTI HCD FTMS 0 0 0 10749 1098927.375 0.9802168638992887 -1 0.036273956298828125 1 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 96.28474662873226 0.004361282420133734 1 QAAPD{I|L}HV{I|L} 9 0 + 63.603 0 0 6.608 6.608 91.929 0 0 0 15.138271765801044 6.751736484954378 6.751736484954378 18.65479093331686 0 1.8539171939081172 1.0969100130080565 0.3494850021680094 0 + + QAAPD{I|L}HV{I|L};[H{I|L}]VND[PG]V{I|L};[QA]A[YK][NG]V{I|L};[QA]A[YK]A[QA]{I|L};[H{I|L}]V[DP][NG]V{I|L};[H{I|L}]VGGD[PG]V{I|L};[H{I|L}]V[DP]A[QA]{I|L};[HV]{I|L}ND[PG]V{I|L};[H{I|L}][DP]V[NG]V{I|L};[H{I|L}]AAAD[PG]V{I|L} 6.608;4.6699;4.1372;4.0028;3.5303;3.3177;2.9546;2.7008;2.6523;2.2357 +;-;-;-;-;-;-;-;-;- + 1145 + NaN NaN 381687.8 NaN 8113 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10751 51.441 NaN 1681900 35 0 385670 0.261 + 33424 YGSRLDYFQ 9 88 574.771658418407 1147.528763903614 2 574.7722778320312 MULTI HCD FTMS 0 0 0 10749 874333.25 0.9178392311092417 -4 0.12505340576171875 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 24.020572477871973 0.15282392193088168 1 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 8 86.679 0 0 7.5535 0 0 220.08293520160595 0 220.08293520160595 0 67.73895634497293 0 0 0 2.774227503252014 0 2.2104093769761874 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 7.5535 - 2758 + NaN NaN 334016.8 NaN 8114 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10752 51.445 NaN 280020 35 0 66080 0.262 + 28385 TPEQQAAIL 9 43 485.7638279150556 969.5131028969112 2 485.7637634277344 MULTI HCD FTMS 0 0 0 10749 218481.953125 0.055435072017629046 11 -0.3259086608886719 3 Unmodified _TPEQQAAIL_ ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF 17.11289562659939 0.2125047172822487 1 AA{I|L}{I|L} 4 5 46.186 0 0 4.7638 0 0 583.2606678693375 0 583.2606678693375 0 30.70107520596089 0 0 0 1.4247425010840047 0 0 0 + AA{I|L}{I|L} 4.7638 + + 19 NaN NaN 142648.2 NaN 8115 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10753 51.448 NaN 294290 35 0 31830 0.261 -1 IPMDPEHVEL 10 65 598.2873144875527 1194.5600760419054 2 598.2874755859375 MULTI HCD FTMS 0 0 0 10749 122896.265625 0.5496383070743135 4 -0.1085662841796875 4 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 36.506200033944 0.17572556831573002 1 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 7 -1 43.703 0 0 3.6585 0 0 0 356.09189783267817 356.09189783267817 16.747425010840047 0 0 0 0 0.7742275032520141 0 0.75 0 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 3.6585 - 500 + NaN NaN 136771.8 NaN 8116 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10754 51.452 NaN 189340 35 0 11086 0.263 -1 RYLSPKWIKMF 11 62 495.60750710382337 1483.8006919116701 3 495.9412841796875 MULTI HCD FTMS 0 0 0 10749 29780.18359375 0.6090964915616662 3 -0.0789031982421875 5 Oxidation (M) _RYLSPKWIKM(Oxidation (M))F_ ENSG00000156976|ENST00000323963|EIF4A2;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;nc|ENSG00000156976|Q14240-2|EIF4A2 5.198440282359431 0.39612207336387734 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WP]W 5 -1 6.9627 0 0 0.46925 0 0 0 767.4758987810638 767.4758987810638 0.611206103324732 0 0 0 0 0 1.3010299956639813 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WP]W 0.46925 - 54 NaN NaN 113835.2 NaN 8117 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10755 51.455 NaN 321650 35 0 40718 0.261 + 24872 RYQEVIQEL 9 67 589.3141667952118 1176.6137806572235 2 589.3140869140625 MULTI HCD FTMS 0 0 0 10749 77679.078125 0.5358384593081847 -2 0.062530517578125 6 Unmodified _RYQEVIQEL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 40.23920728925047 0.06424668180817725 1 {I|L}QE{I|L} 4 5 49.68 0 0 4.2223 0 0 675.3336502762036 0 675.3336502762036 0 35.970325397914564 0 0 0 1.3494850021680094 0 0 0.4247425010840047 + {I|L}QE{I|L} 4.2223 + + 162 NaN NaN 135867.9 NaN 8118 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10756 51.458 NaN 192470 35 0 17172 0.261 + 24206 RYFKGYFL 8 63 547.2950274157149 1092.5755018982297 2 547.2947387695312 MULTI HCD FTMS 0 0 0 10749 35482.0703125 0.8603814453945291 -4 0.12505340576171875 7 Unmodified _RYFKGYFL_ ENSG00000125772|ENST00000379019|GPCPD1 12.531546534597751 0.5015908124873912 1 EYGK 4 6 24.68 0 0 2.2589 0 0 149.10533850529436 463.21113001041255 612.3164685157069 0 0 0 0 0 0.5 0 0 0.4247425010840047 EYGK 2.2589 - 165 + NaN NaN 114652.9 NaN 8119 2635 10749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10758 51.463 NaN 862570 35 0 244910 0.327 + 15042 LLQYVYNL 8 73 513.2869653462706 1024.559377759341 2 513.2869873046875 MULTI HCD FTMS 0 0 0 10757 274137.21875 0.820401902327333 2 -0.052577972412109375 1 Unmodified _LLQYVYNL_ chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;ENSG00000104738|ENST00000649973|MCM4 9.347437153973935 0.5250182646323369 1 {I|L}{I|L}Q 3 5 30.062 0 0 2.9341 0 0 0 667.3116549127561 667.3116549127561 14.577118610328341 0 0 0 0 0.5 1.6989700043360187 0 0 + {I|L}{I|L}Q 2.9341 + + 339 + NaN NaN 215975.6 NaN 8120 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10759 51.468 NaN 320870 35 0 113980 0.261 + 24186 RYFENPQVI 9 55 583.3038841826935 1164.593215432187 2 583.303955078125 MULTI HCD FTMS 0 0 0 10757 92887.53125 0.3596089284464492 2 -0.052577972412109375 2 Unmodified _RYFENPQVI_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 11.494710602746466 0.2610445893512368 1 SN[QP]V{I|L} 6 4 33.901 0 0 2.911 0 0 508.23997695136876 0 508.23997695136876 0 17.786596949921215 0 0 0 1 0 0 0 SN[QP]V{I|L} 2.911 - 88 NaN NaN 143147.7 NaN 8121 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10760 51.471 NaN 220070 35 0 16639 0.261 + 34255 YPDRIMNTF 9 55 586.7737018509798 1171.5328507687595 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10757 88267.1796875 0.022044550592542712 113 -3.0233230590820312 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 55.24861242081279 0.024228342611644454 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 56.434 0 0 4.8171 4.8171 82.994 0 0 0 4.148476339571843 4.148476339571843 4.148476339571843 4.148476339571843 0 1.9143943297944483 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRP[WP]{[QN]|[E{I|L}]|[KN]} 4.8171;4.463;4.0987;4.0311;3.677;3.3127;0.38591 +;+;-;-;-;-;- + 443 NaN NaN 118803.6 NaN 8122 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10761 51.474 NaN 127150 35 0 22482 0.261 -1 LPMSDQYVKL 10 43 605.3126605786235 1208.610768224047 2 605.3131103515625 MULTI HCD FTMS 0 0 0 10757 55374.875 0.7509666015114085 -1 0.026325225830078125 4 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 30.7034409873982 0.22608124881558994 1 {I|L}P{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}[YQ]V[K{I|L}] 10 -1 + 39.398 0 0 3.2598 3.2598 88.487 0 0 0 32.40803747765064 7.269987279362624 7.269987279362624 39.397737521010825 0 1.274227503252014 0 0 0 {I|L}P{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}[YQ]V[K{I|L}] 3.2598 + + 25 + NaN NaN 98689.3 NaN 8123 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10762 51.478 NaN 106260 35 0 22086 0.264 + 23510 RNDNRFQQPQ 10 32 434.88214623931003 NaN 0 434.8820495605469 PEAK HCD FTMS 0 0 0 10757 51503.76171875 0.4818577930419905 169 -4.438694000244141 5 Unmodified _RNDNRFQQPQ_ REV__ENSG00000156304|ENST00000286835|SCAF4;REV__nc|ENSG00000156304|O95104-2|SCAF4;REV__nc|ENSG00000156304|O95104-3|SCAF4;REV__SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant 1.5922808571145555 0.3388215173004697 1 N 1 -1 3.9794 0 0 0.45859 0 0 368.50942690069195 382.16474329166255 750.6741701923545 0 0 0 0 0 0 0 0 0 N 0.45859 + + 3 + NaN NaN 107609.5 NaN 8124 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10763 51.481 NaN 109510 35 0 12250 0.261 + 35325 YWMHVQNTF 9 48 621.2742868178269 1240.5340207024537 2 621.2742309570312 MULTI HCD FTMS 0 0 0 10757 71094.0703125 0.20423951288691655 23 -0.657623291015625 6 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 58.678817012210395 0.019429721296335044 1 QNT{M(Oxidation (M))|F} 4 5 47.88 0 0 3.8596 0 0 732.3055135629625 0 732.3055135629625 0 40.53370823188436 0 0 0 1.1694451763165201 0 0 0.4247425010840047 + QNT{M(Oxidation (M))|F} 3.8596 + + 93 NaN NaN 100285.4 NaN 8125 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10764 51.484 NaN 100320 35 0 7761 0.261 -1 AYPHNLMTF 9 53 555.2577483138126 1108.5009436944251 2 555.2574462890625 MULTI HCD FTMS 0 0 0 10757 41075.2421875 0.02855540132311706 89 -2.388835906982422 7 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 20.453626601364224 0.18364154288633264 1 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 3 -1 10.686 0 0 0.96404 0 0 695.3384876935562 0 695.3384876935562 0 10.686362358410124 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 0.96404 + + 11 NaN NaN 119511.6 NaN 8126 2636 10757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10766 51.489 NaN 150100 35 0 18884 0.327 -1 VVMFVAFMIS 10 48 580.2962072347921 NaN 0 580.2759399414062 PEAK HCD FTMS 0 0 0 10765 22370.220703125 1 0 0 1 Oxidation (M) _VVM(Oxidation (M))FVAFMIS_ ENSG00000135218|ENST00000447544|CD36;nc|ENSG00000135218|P16671-3|CD36;nc|ENSG00000135218|P16671-4|CD36 5.731851221503515 0.33527861879838866 1 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 10.177 0 0 0.87843 0 0 101.08718187309553 663.3101900690061 764.3973719421017 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.87843 - 11 + NaN NaN 105743.9 NaN 8127 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10767 51.494 NaN 159050 35 0 18296 0.261 -1 0 50 549.2846428775406 548.2773664109405 1 549.2850341796875 MULTI HCD FTMS 0 0 0 10765 76255.0546875 0.835027331216531 -2 0.052639007568359375 2 NaN NaN 1 [YN]V 3 -1 22.676 0 0 4.1359 0 0 0 169.08083866119367 169.08083866119367 8.071968632008435 0 0 0 0 0 1.6989700043360187 0 0 [YN]V 4.1359 - 19 NaN NaN 115093 NaN 8128 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10768 51.497 NaN 151570 35 0 8534.3 0.261 + 25447 SEVDLTRSF 9 58 527.2641448702976 NaN 0 527.26416015625 PEAK HCD FTMS 0 0 0 10765 45245.2578125 0.6434972630721859 1 -0.026264190673828125 3 Unmodified _SEVDLTRSF_ ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 55.23464941255904 0.0343441126521273 1 VD{I|L}TRS 6 3 52.133 0 0 4.9532 0 0 216.074401434668 162.05576502017814 378.1301664548462 0 0 0 0 0 2.110924374808178 0 0.28872548999643577 0 + VD{I|L}TRS 4.9532 + + 132 + NaN NaN 128135.5 NaN 8129 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10769 51.501 NaN 388610 35 0 56514 0.261 -1 VMYMQDYW 8 69 576.2304907095953 1150.4464284859905 2 576.2301635742188 MULTI HCD FTMS 0 0 0 10765 31324.958984375 0.23754592920060383 10 -0.2995185852050781 4 Oxidation (M) _VM(Oxidation (M))YMQDYW_ ENSG00000211584|ENST00000442218|SLC48A1 5.230669730166228 0.5342319408533849 1 SVS[H{I|L}]VS{[DS]|[MA]|[CV]|TT} 9 -1 36.176 0 0 3.1445 0 0 220.9963978925777 0 220.9963978925777 0 13.45947172861458 0 0 0 0 0 0.7302046884880937 0 SVS[H{I|L}]VS{[DS]|[MA]|[CV]|TT} 3.1445 - 609 + NaN NaN 141665.1 NaN 8130 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10770 51.504 NaN 133190 35 0 23795 0.262 + 25051 SAAPAEQYL 9 39 475.2349906396307 948.4554283460615 2 475.235107421875 MULTI HCD FTMS 0 0 0 10765 58830.90625 0.5975061763189901 -3 0.0889129638671875 5 Unmodified _SAAPAEQYL_ ENSG00000138081|ENST00000403359|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11 28.494509381512117 0.11816142465008336 1 {[SA]|[TG]}A[PA]EQY{I|L} 9 0 + 55.111 0 0 5.8106 5.8106 84.365 0 0 0 3.4678748622465605 14.960762528683702 3.4678748622465605 3.4678748622465605 0 1.9247425010840047 0 0 0 + + {[SA]|[TG]}A[PA]EQY{I|L};[QT][PA]EQY{I|L};{[SA]|[TG]}A[PA]E[AG]Y{I|L};[PS]{[NV]|[RG]}EQY{I|L};[QT][PA]E[AG]Y{I|L};[PS]{[NV]|[RG]}E[AG]Y{I|L} 5.8106;5.445;4.8398;4.6004;4.4684;3.6239 +;-;-;-;-;- + 103 NaN NaN 120635.5 NaN 8131 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10771 51.507 NaN 128570 35 0 19517 0.261 + -1 MCYMCGPSVSF 11 47 452.1692632148798 1353.4859602448394 3 452.1690979003906 MULTI HCD FTMS 0 0 0 10765 33023.56640625 0.19308468550706617 13 -0.388214111328125 6 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))YMC(Carbamidomethyl (C))GPSVSF_ REV__ENST00000415149.6_1_3:107241789-107241840:+|nuORF 1.3296431237094175 0.4130893034510334 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.144 0 0 1188.4069024829237 0 1188.4069024829237 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.144 + + 14 + NaN NaN 109774.3 NaN 8132 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10772 51.511 NaN 194790 35 0 33361 0.261 + 9725 HWNARLAL 8 61 490.77416639728 979.53377986136 2 490.7740173339844 MULTI HCD FTMS 0 0 0 10765 69963.1640625 0.5234606975068632 -3 0.0889129638671875 7 Unmodified _HWNARLAL_ REV__nc|ENSG00000185339|P20062-2|TCN2 8.593279151180031 0.5292430274356741 1 E{I|L}A{I|L} 4 -1 29.157 0 0 2.9766 0 0 535.2788563459 0 535.2788563459 0 16.392477913035783 0 0 0 0.5 0 0 0 E{I|L}A{I|L} 2.9766 - 25 NaN NaN 113481.9 NaN 8133 2637 10765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10774 51.516 NaN 505780 35 0 108280 0.327 -1 0 73 560.2616691638758 559.2543926972758 1 560.27880859375 MULTI HCD FTMS 0 0 0 10773 14374.8291015625 0.6137489658498844 -7 0.20395660400390625 1 NaN NaN 1 Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 13.71 0 0 2.4515 0 0 118.06110307424116 0 118.06110307424116 0 3.252574989159953 0 0 0 0 0 0.3252574989159953 0 Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.4515 - 36 + NaN NaN 169165.9 NaN 8134 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10775 51.52 NaN 349280 35 0 42209 0.261 + 31875 VYNENLVHMI 10 67 624.3080337249818 1246.6015145167635 2 624.3081665039062 MULTI HCD FTMS 0 0 0 10773 249338.046875 1 0 0 2 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 71.70789743142352 0.01556163018108538 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 10 0 + 82.814 0 0 6.6432 6.6432 88.304 0 0 0 5.1329657522032335 5.1329657522032335 5.1329657522032335 9.164539485499247 0 2.8494850021680094 2 0 0.9247425010840047 + + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YN]VE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV][HT][Q{I|L}]ENM{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YV]{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 6.6432;5.908;4.3963;3.9287;3.1756 +;-;-;-;- + 360 NaN NaN 150387 NaN 8135 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10776 51.524 NaN 280040 35 0 60623 0.263 + -1 LCQQCSCP 8 49 498.1909129239224 994.3672729146448 2 498.1911315917969 MULTI HCD FTMS 0 0 0 10773 131581.65625 0.9168420152998873 -1 0.026264190673828125 3 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))QQCSC(Carbamidomethyl (C))P_ REV__ENSG00000135144|ENST00000548759|DTX1 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6116 0 0 716.2054440068484 0 716.2054440068484 0 14.286662482156345 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6116 - 11 NaN NaN 130411.3 NaN 8136 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10777 51.527 NaN 226430 35 0 36110 0.261 + 3553 EISPKEQL 8 50 472.2584391076817 942.5023252821634 2 472.2583923339844 MULTI HCD FTMS 0 0 0 10773 145502.59375 0.21744301842890132 10 -0.3061180114746094 4 Unmodified _EISPKEQL_ REV__ENSG00000147082|ENST00000376042|CCNB3 41.8396318013385 0.20729740072799377 1 {[QN]|[E{I|L}]|[KN]}S[KP]EQ{I|L} 8 -1 + 52.317 0 0 5.5509 5.5509 84.797 0 0 0 13.30706579873059 20.349490893123843 13.30706579873059 5.440680443502757 0 0.8494850021680094 1.2218487496163564 0.4247425010840047 0.2742275032520141 {[QN]|[E{I|L}]|[KN]}S[KP]EQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[{I|L}A]EQ{I|L};{[QN]|[E{I|L}]|[KN]}E[Q{I|L}]AQ{I|L};{[QN]|[E{I|L}]|[KN]}S[KP]E[AG]{I|L};{[QN]|[E{I|L}]|[KN]}Q{[QN]|[E{I|L}]|[KN]}AQ{I|L};{[QN]|[E{I|L}]|[KN]}[AG][{I|L}A]EQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[{I|L}A]E[AG]{I|L};[{I|L}T]D[KP]EQ{I|L};{[QN]|[E{I|L}]|[KN]}E[Q{I|L}]A[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG]{[QN]|[E{I|L}]|[KN]}AQ{I|L} 5.5509;4.9736;4.594;4.5682;4.523;3.9909;3.9909;3.6442;3.6113;3.5403 +;-;-;-;-;-;-;-;-;- + 98 NaN NaN 113692.4 NaN 8137 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10778 51.53 NaN 171550 35 0 23987 0.261 + 27924 TENDIRVMF 9 54 570.7713464969518 1139.5281400607034 2 570.7716674804688 MULTI HCD FTMS 0 0 0 10773 80342.171875 0.7741784581139697 1 -0.0296630859375 5 Oxidation (M) _TENDIRVM(Oxidation (M))F_ ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 59.368380827593164 0.01846506874148156 1 {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 64.205 0 0 5.6343 5.6343 87.34 0 0 0 6.122731327798547 6.122731327798547 6.122731327798547 9.208187539523749 0 2.7302046884880937 0 0.7059771852360797 0 + + {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}NE[RV]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGE[RV]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}NHH[YR][PS] 5.6343;4.8263;4.4601;3.6521;0.44723 +;-;-;-;- + 172 NaN NaN 107164.4 NaN 8138 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10779 51.534 NaN 94479 35 0 8630.5 0.262 + 620 APGDLETLP 9 40 456.736895224865 911.45923751653 2 456.737060546875 MULTI HCD FTMS 0 0 0 10773 26745.361328125 0.5840696463479591 -1 0.026264190673828125 6 Unmodified _APGDLETLP_ ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14857708-14876689:-|nuORF;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2 11.640296217721598 0.25978676193971967 1 T[{I|L}P] 3 6 20.458 0 0 2.2445 0 0 582.2651895202395 0 582.2651895202395 0 9.999999999999998 0 0 0 1 0 0 0 + T[{I|L}P] 2.2445 + + 22 + NaN NaN 98299.7 NaN 8139 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10780 51.537 NaN 129020 35 0 5963.9 0.261 + -1 AYKHLLNVM 9 59 552.7966719835546 1103.578791033909 2 552.7975463867188 MULTI HCD FTMS 0 0 0 10773 15793.2958984375 0.13059072912238906 10 -0.3061180114746094 7 Oxidation (M) _AYKHLLNVM(Oxidation (M))_ REV__ENSG00000163625|ENST00000295888|WDFY3;REV__ENST00000426414.6_1_4:85730999-85781744:-|nuORF;REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 7.910154910731844 0.2910521888787154 1 V{M(Oxidation (M))|F} 2 -1 21.766 0 0 1.9723 0 0 839.4693470685562 0 839.4693470685562 0 7.95371572735597 0 0 0 0.3807196863200844 0 0 0 V{M(Oxidation (M))|F} 1.9723 + + 46 NaN NaN 103159.4 NaN 8140 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10781 51.54 NaN 141460 35 0 33863 0.263 + 29403 TYRRGDFTTF 10 58 421.87607651792587 1262.6064001539776 3 421.876953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _TYRRGDFTTF_ REV__ENSG00000188162|ENST00000399397|OTOG;REV__nc|ENSG00000188162|Q6ZRI0|OTOG 6.723162845929126 0.4397169348982109 1 A{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9376 0 0 1026.4903093110072 0 1026.4903093110072 0 18.979400086720375 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 1.9376 - 19 + NaN NaN 102250.9 NaN 8141 2638 10773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10783 51.545 NaN 411910 35 0 54772 0.327 + 18584 MVSDEYEQL 9 64 565.2396314481397 1128.4647099630793 2 565.23974609375 MULTI HCD FTMS 0 0 0 10782 213100.265625 0.1764055332370044 12 -0.3519325256347656 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 62.57269311338072 0.013982455292112035 1 EYEQ{I|L} 5 4 56.058 0 0 4.9676 0 0 448.16316420722814 0 448.16316420722814 0 37.825834421237516 0 0 0 1 0 1.1989700043360187 0 + EYEQ{I|L} 4.9676 + + 106 NaN NaN 148075.1 NaN 8142 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10784 51.55 NaN 924410 35 0 51852 0.261 + 7413 FVPANDNANL 10 99 537.7642133872557 1073.5138738413114 2 537.7645874023438 MULTI HCD FTMS 0 0 0 10782 240156.6875 0.8030764931839987 -1 0.0296630859375 2 Unmodified _FVPANDNANL_ REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant 13.042465956692817 0.38911719078024076 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}D 5 -1 18.933 0 0 1.7636 0 0 0 525.2422806208439 525.2422806208439 2.50508444608478 0 0 0 0 0 1.0969100130080565 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}D 1.7636 - 927 NaN NaN 256089.1 NaN 8143 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10785 51.553 NaN 387620 35 0 44101 0.261 + 12723 KYAMMFAEL 9 70 568.261457088658 1134.5083612441158 2 568.2618408203125 MULTI HCD FTMS 0 0 0 10782 177286.203125 0.5868808737525509 15 -0.4306793212890625 3 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 43.77239144664712 0.04802738721622131 1 [YK]A{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 9 0 + 39.76 0 0 3.5046 3.5046 88.682 0 0 0 5.162673930647415 13.786755556822605 5.162673930647415 39.759589834611305 0 1.4802046884880937 0 0 0 + + [YK]A{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 3.5046 + + 241 NaN NaN 145826.8 NaN 8144 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10786 51.557 NaN 195860 35 0 26180 0.261 + 31919 VYNSEYYHF 9 53 611.2642547658187 1220.5139565984373 2 611.2642211914062 MULTI HCD FTMS 0 0 0 10782 75829.8359375 0.07683588661894517 14 -0.4044227600097656 4 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 68.08070601005525 0.009709267492204555 1 [YV]NSEYY{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 78.746 0 0 6.4519 6.4519 88.736 0 0 0 73.26151861349551 3.65279269351241 3.65279269351241 9.208187539523749 0 1.579689690656103 2 0.4247425010840047 0.3807196863200844 + + [YV]NSEYY{[{M(Oxidation (M))|F}H]|[RQ]};[YV]GGSEYY{[{M(Oxidation (M))|F}H]|[RQ]} 6.4519;5.6974 +;- + 156 + NaN NaN 117323.1 NaN 8145 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10787 51.56 NaN 115030 35 0 34100 0.261 + 9953 IEDLLPKYNE 10 33 617.3221613328525 1232.6297697325049 2 617.3221435546875 MULTI HCD FTMS 0 0 0 10782 62526.6953125 0.545941224095661 3 -0.09877777099609375 5 Unmodified _IEDLLPKYNE_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|62|2|sense 10.799506525563784 0.4100970765206026 1 {I|L}{I|L} 2 -1 20.217 0 0 1.6401 0 0 357.1574319412924 646.2846657866769 1003.4420977279692 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L} 1.6401 + + 10 + NaN NaN 95677 NaN 8146 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10788 51.563 NaN 236100 35 0 33021 0.261 + 33464 YHGMLNPFF 9 64 563.2644189363656 1124.514284939531 2 563.26416015625 MULTI HCD FTMS 0 0 0 10782 53779.76171875 1 0 0 6 Unmodified _YHGMLNPFF_ REV__ENSG00000164930|ENST00000358755|FZD6;REV__nc|ENSG00000164930|O60353-2|FZD6 7.910154910731844 0.2910521888787154 1 AV{M(Oxidation (M))|F} 3 -1 28.94 0 0 2.5736 0 0 789.3256092755875 0 789.3256092755875 0 21.95046257204389 0 0 0 0.4247425010840047 0 0 0 AV{M(Oxidation (M))|F} 2.5736 - 62 NaN NaN 121052.5 NaN 8147 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10789 51.567 NaN 90859 35 0 16159 0.261 + 26405 STAAGPEDQPL 11 39 543.2579104951693 1084.5012680571385 2 543.25732421875 MULTI HCD FTMS 0 0 0 10782 36113.515625 1 0 0 7 Unmodified _STAAGPEDQPL_ ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4 7.608950283845883 0.38555039536024605 1 H[QP]{I|L} 4 8 19.693 0 0 1.8158 0 0 591.2509022443375 0 591.2509022443375 0 14.208187539523749 0 0 0 0.5 0 0 0 H[QP]{I|L} 1.8158 - 8 NaN NaN 98240.5 NaN 8148 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10790 51.57 NaN 79601 35 0 15358 0.262 + 26417 STESDTDY 8 41 459.17212108051723 NaN 0 459.1723937988281 PEAK HCD FTMS 0 0 0 10782 12984.71875 0.5555146023859924 -13 0.38161468505859375 8 Unmodified _STESDTDY_ REV__CUBN|p.N1018Hfs*6|1|0.03|ENSG00000107611|chr10:17065595-17065596|-/TAGAATAAAGGGTAGTG|frameshift_variant;REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;REV__ENSG00000107611|ENST00000377833|CUBN 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92542.7 NaN 8149 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10791 51.573 NaN 52365 35 0 4682.3 0.261 -1 YHLLEDYEM 9 42 614.7631994020348 1227.5118458708696 2 614.7633666992188 MULTI HCD FTMS 0 0 0 10782 14546.66796875 0.764998047419461 1 -0.0362701416015625 9 Oxidation (M) _YHLLEDYEM(Oxidation (M))_ ENSG00000164134|ENST00000296543|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;nc|ENSG00000164134|Q9BXJ9-4|NAA15 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.1342 0 0 786.39360243965 0 786.39360243965 0 18.895840698003 0 0 0 0 0 0 0 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 2.1342 - 9 NaN NaN 92871.8 NaN 8150 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10792 51.577 NaN 64316 35 0 7097.9 0.264 + 21914 QDQVAAPF 8 46 438.21624161445806 874.4179302957161 2 438.216796875 MULTI HCD FTMS 0 0 0 10782 3808.489013671875 0.05130935537363184 7 -0.21734237670898438 10 Unmodified _QDQVAAPF_ ENSG00000049323|ENST00000404816|LTBP1;LTBP1|p.Q1575Hfs*14|1|0.26|ENSG00000049323|chr2:33389196-33389215|AGCTGTGTAACATCCCCGTG/-|frameshift_variant;nc|ENSG00000049323|Q14766-4|LTBP1 7.910154910731844 0.5302565402355366 1 {M(Oxidation (M))|F} 1 7 18.979 0 0 2.1705 0 0 709.3394371089959 0 709.3394371089959 0 1.9897000433601875 0 0 0 0.3494850021680094 0 0 0 + {M(Oxidation (M))|F} 2.1705 + + 5 + NaN NaN 108420.7 NaN 8151 2639 10782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10794 51.582 NaN 2144600 35 0 194650 0.326 + 22297 QPERDWVL 8 105 521.7694557425187 1041.5243585518374 2 521.7694091796875 MULTI HCD FTMS 0 0 0 10793 1259184.625 1 0 0 1 Unmodified _QPERDWVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 48.345845343767074 0.13800640434549966 1 ERDR{M(Oxidation (M))|F}{I|L} 6 4 34.819 0 0 3.343 0 0 207.10084731269689 0 207.10084731269689 0 14.724666386411094 0 0 0 0 0 0.3252574989159953 1.1747425010840047 ERDR{M(Oxidation (M))|F}{I|L} 3.343 - 625 NaN NaN 410960.5 NaN 8152 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10795 51.586 NaN 716950 35 0 101460 0.261 + 21685 QAAPDLHVL 9 66 482.2666516414659 962.5187503497318 2 482.2665710449219 MULTI HCD FTMS 0 0 0 10793 378481.8125 0.33759669995632663 4 -0.12181854248046875 2 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 64.23631603340823 0.01165516075559909 1 [QA]APD{I|L}HV{I|L} 9 0 + 36.845 0 0 3.828 3.828 88.177 0 0 0 -1.064921830680703 7.147642715192511 -1.064921830680703 25.25576261223691 0 1.274227503252014 0 0 0 + + [QA]APD{I|L}HV{I|L};[QA]A[KT]{I|L}{[QG]|[NA]}{M(Oxidation (M))|F};[KS]{[VA]|[{I|L}G]}{I|L}N{[QG]|[NA]}{M(Oxidation (M))|F} 3.828;1.2041;0.55605 +;-;- + 558 + NaN NaN 193202.2 NaN 8153 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10796 51.59 NaN 443480 35 0 73941 0.261 + 29027 TYFDKNYNL 9 72 589.2797870328907 1176.5450211325813 2 589.2802734375 MULTI HCD FTMS 0 0 0 10793 195372.90625 1 0 0 3 Unmodified _TYFDKNYNL_ ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 63.227496030279354 0.01306643085373406 1 [YT]{M(Oxidation (M))|F}DKNYN{I|L} 9 0 + 70.644 0 0 6.0043 6.0043 87.312 0 0 0 16.549043657362702 16.12150605996454 16.12150605996454 9.208187539523742 0 1.9386218330464624 2 0 0.4247425010840047 + + [YT]{M(Oxidation (M))|F}DKNYN{I|L};[YT]{M(Oxidation (M))|F}DKGGYN{I|L};[YT]{M(Oxidation (M))|F}DKNYGG{I|L};[YT]{M(Oxidation (M))|F}DKGGYGG{I|L};[YT]{M(Oxidation (M))|F}[NS][VG]YN{I|L};N[C(Carbamidomethyl (C))N]{I|L}{[CA]|SS}{I|L}QE{I|L};N[C(Carbamidomethyl (C))N]{I|L}{I|L}{[CA]|SS}QE{I|L};NP[WE][YV]QE{I|L};N[C(Carbamidomethyl (C))N]{I|L}{I|L}D{[DS]|[MA]|[CV]|TT}N{I|L};{[QN]|[E{I|L}]|[KN]}Q{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 6.0043;5.2217;5.2217;4.4428;3.6423;2.7175;2.0561;1.7037;1.4501;1.2961 +;-;-;-;-;-;-;-;-;- + 629 NaN NaN 146601.5 NaN 8154 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10797 51.593 NaN 646670 35 0 76940 0.261 + 24380 RYIPTAAAF 9 91 505.276884993559 1008.539217053918 2 505.27685546875 MULTI HCD FTMS 0 0 0 10793 151476.828125 0.0210461199537248 32 -0.91094970703125 4 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 32.78568957990786 0.09846250359632436 1 AAA{M(Oxidation (M))|F} 4 5 40.31 0 0 3.9969 0 0 630.3480091779312 0 630.3480091779312 0 22.958800173440753 0 0 0 1.2887254899964358 0 0 0 + AAA{M(Oxidation (M))|F} 3.9969 + + 342 NaN NaN 191458.8 NaN 8155 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10798 51.596 NaN 181950 35 0 17784 0.261 -1 0 43 424.08158163941823 NaN 0 424.0814514160156 PEAK HCD FTMS 0 0 0 10793 74758.296875 0.46298661542381364 174 -4.565460205078125 5 NaN NaN 1 A 1 -1 3.9794 0 0 0.4703 0 0 610.0325195026662 162.0560701959594 772.0885896986256 0 0 0 0 0 0 0 0 0 A 0.4703 - 4 + NaN NaN 113343.4 NaN 8156 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10799 51.6 NaN 160340 35 0 14952 0.261 -1 TYMKDLYQL 9 53 595.7919115901797 1189.5692702471592 2 595.7920532226562 MULTI HCD FTMS 0 0 0 10793 83571.4375 0.6437739704328953 11 -0.3156623840332031 6 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 28.494509381512117 0.11816142465008336 1 [YT]{M(Oxidation (M))|F} 3 -1 31.879 0 0 2.6799 0 0 0 775.4025362604124 775.4025362604124 0.6812779123253421 0 0 0 0 0.3807196863200844 2 0 0 [YT]{M(Oxidation (M))|F} 2.6799 + + 63 + NaN NaN 105420.2 NaN 8157 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10800 51.603 NaN 213560 35 0 29691 0.261 + 8937 HPDPTRLLL 9 51 531.3087630578174 1060.6029731824347 2 531.3089599609375 MULTI HCD FTMS 0 0 0 10793 32341.701171875 0.39655513054626823 3 -0.08220672607421875 7 Unmodified _HPDPTRLLL_ ENSG00000183751|ENST00000568546|TBL3 9.38312468134398 0.279288223203164 1 [Y{I|L}][DN]Y{M(Oxidation (M))|F}P 7 8 19.965 0 0 1.8825 0 0 0 145.17715702555373 145.17715702555373 -4.24279286061882 0 -4.24279286061882 0 0 0 1.3979400086720375 0 0 [Y{I|L}][DN]Y{M(Oxidation (M))|F}P 1.8825 - 69 NaN NaN 114405.5 NaN 8158 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10801 51.606 NaN 183600 35 0 25881 0.262 + 4795 EYVEKFYRI 9 53 416.2203591694848 1245.6392481086546 3 416.2204284667969 MULTI HCD FTMS 0 0 0 10793 5066.8759765625 0.12112406249608974 21 -0.59503173828125 8 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 4.189502756095605 0.319257502753388 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.2431 0 0 1080.5606786279889 0 1080.5606786279889 0 -6.73393743112328 -6.73393743112328 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2431 + + 22 + NaN NaN 112097.9 NaN 8159 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10802 51.61 NaN 77788 35 0 13139 0.261 + -1 CTMDSSRTV 9 42 508.21172347465404 NaN 0 508.21197509765625 PEAK HCD FTMS 0 0 0 10793 20926.666015625 0.5811570426703324 60 -1.6621360778808594 9 Oxidation (M) _CTM(Oxidation (M))DSSRTV_ REV__ENSG00000176542|ENST00000316407|USF3 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98308.8 NaN 8160 2640 10793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10804 51.615 NaN 1470800 35 0 347820 0.327 + 33425 YGSRLDYFQ 9 88 574.771658418407 1147.528763903614 2 574.7722778320312 MULTI HCD FTMS 0 0 0 10803 729666.1875 0.7659736747989531 2 -0.04925537109375 1 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 24.020572477871973 0.15282392193088168 1 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 8 85.583 0 0 7.4581 0 0 220.083564766179 0 220.083564766179 0 67.52365647188633 0 0 0 2.774227503252014 0 1.9247425010840047 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 7.4581 - 1148 + NaN NaN 306208.4 NaN 8161 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10805 51.619 NaN 665620 35 0 70575 0.261 + 14769 LICRHRLD 8 91 513.2869653462706 1024.559377759341 2 513.2869262695312 MULTI HCD FTMS 0 0 0 10803 74965.515625 0.22434695992077658 7 -0.20723342895507812 2 Unmodified _LICRHRLD_ ENSG00000204564|ENST00000651131|C6orf136;ENST00000487873.1_1_6:30618866-30620506:+|nuORF;ENST00000488383.5_1_6:30618866-30620689:+|nuORF;nc|nan|Q5SQH8-2|C6orf136;nc|nan|Q5SQH8-3|C6orf136;nc|nan|Q5SQH8|C6orf136 11.640296217721598 0.50814828952472 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DKS{I|L}C 8 7 42.106 0 0 4.1097 0 0 0 128.10463179847594 128.10463179847594 13.805103443487646 0 0 0 0 0 1.5228787452803376 0.3054621874040891 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DKS{I|L}C 4.1097 - 678 NaN NaN 189480.6 NaN 8162 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10806 51.623 NaN 172590 35 0 11408 0.261 -1 YPDRIMNTF 9 51 586.7737018509798 1171.5328507687595 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10803 68438.5703125 0.017092395283009737 118 -3.0329322814941406 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 27.223235318498237 0.1251536255799991 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[R{I|L}]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 -1 + 52.558 0 0 4.4863 4.4863 81.901 0 0 0 12.609849771020478 17.4595372608497 12.609849771020478 3.0102999566398125 0 0.9247425010840047 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[R{I|L}]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RP]YNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[R{I|L}]{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RP]YGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RP][WP]{[QN]|[E{I|L}]|[KN]} 4.4863;4.2293;4.2293;3.7003;3.4433;3.4433;0.90317 +;-;-;-;-;-;- + 149 NaN NaN 124063 NaN 8163 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10807 51.626 NaN 186920 35 0 25144 0.261 + 11697 KAKQETWFQ 9 63 583.3038841826935 1164.593215432187 2 583.3042602539062 MULTI HCD FTMS 0 0 0 10803 47524.6875 0.1839891933464144 7 -0.20723342895507812 4 Unmodified _KAKQETWFQ_ ENST00000452825.7_2_X:53221315-53221459:-|nuORF 3.944395688203298 0.32111559684428237 1 A{M(Oxidation (M))|F} 2 7 8.0031 0 0 0.6872 0 0 237.13589228941197 706.2935885065061 943.4294807959182 0 0 0 0 0 0.3054621874040891 0 0 0 A{M(Oxidation (M))|F} 0.6872 - 100 + NaN NaN 112275.8 NaN 8164 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10808 51.629 NaN 173130 35 0 13923 0.261 + 28841 TVHEILQAAM 10 63 556.7907644726689 1111.5669760121377 2 556.7913818359375 MULTI HCD FTMS 0 0 0 10803 59936.734375 0.780639208410335 -2 0.06922149658203125 5 Unmodified _TVHEILQAAM_ ENSG00000174010|ENST00000328046|KLHL15 6.723162845929126 0.4397169348982109 1 TNW 3 9 29.45 0 0 2.6495 0 0 692.385592810769 0 692.385592810769 0 13.252574989159953 0 0 0 0 0 0 0.3252574989159953 TNW 2.6495 - 171 + NaN NaN 105049.7 NaN 8165 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10809 51.633 NaN 101100 35 0 18207 0.261 + 16522 LTLEHPFN 8 40 485.7540434386486 NaN 0 485.76361083984375 PEAK HCD FTMS 0 0 0 10803 6266.78076171875 1 0 0 6 Unmodified _LTLEHPFN_ tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 5.230669730166228 0.38822285293237185 1 {I|L} 1 7 6.9897 0 0 0.72096 0 0 131.07442334376748 722.3111643244581 853.3855876682255 0 0 0 0 0 0 0 0 0 + {I|L} 0.72096 + + 2 + NaN NaN 96891.5 NaN 8166 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10810 51.636 NaN 72669 35 0 6226.2 0.261 + 20178 NYKRYFPVI 9 46 600.3320611167172 1198.6495693002344 2 600.3316040039062 MULTI HCD FTMS 0 0 0 10803 6970.8203125 0.18369811387568094 1 -0.0295562744140625 7 Unmodified _NYKRYFPVI_ chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9;ENSG00000267978|ENST00000595065|MAGEA9B 16.942295170755138 0.21397866736869717 1 T 1 9 5.4846 0 0 0.45756 0 0 572.3508765285532 522.2410982721311 1094.5919748006843 0 0 0 0 0 0 0 0 0 T 0.45756 - 18 + NaN NaN 105159.7 NaN 8167 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10811 51.639 NaN 169200 35 0 16448 0.261 + 34423 YPESESIMM 9 60 551.7252500357886 1101.435947138377 2 551.7249145507812 MULTI HCD FTMS 0 0 0 10803 49529.87890625 0.5140288352213875 -9 0.269866943359375 8 Oxidation (M) _YPESESIMM(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 42.09456458481378 0.05572955244001856 1 S{I|L}M{M(Oxidation (M))|F} 4 5 54.469 0 0 4.9453 0 0 605.2338124005875 0 605.2338124005875 0 31.792972196075127 0 0 0 1.9247425010840047 0 0.805462187404089 0 + S{I|L}M{M(Oxidation (M))|F} 4.9453 + + 111 NaN NaN 107134.5 NaN 8168 2641 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10813 51.644 NaN 504890 35 0 55968 0.327 + 20615 PETRTDPEL 9 82 529.2619110034669 1056.5092690737338 2 528.7716674804688 MULTI HCD FTMS 0 0 0 10812 47645.6875 0.674485800695914 2 -0.0593109130859375 1 Unmodified _PETRTDPEL_ ENSG00000090539|ENST00000204604|CHRD;ENST00000460627.5_1_3:184104458-184107207:+|nuORF;nc|ENSG00000090539|Q9H2X0-5|CHRD 16.149105407346934 0.22083165093524068 1 MDPE{I|L} 5 5 27.779 0 0 2.6294 0 0 453.2455311505875 0 453.2455311505875 0 1.3654586561822413 0 0 0 0 0 0.4247425010840047 0 MDPE{I|L} 2.6294 - 689 NaN NaN 165891.4 NaN 8169 2642 10812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10814 51.649 NaN 92105 35 0 7766 0.261 + 35326 YWMHVQNTF 9 41 621.2742868178269 1240.5340207024537 2 621.2740478515625 MULTI HCD FTMS 0 0 0 10812 63990.83984375 0.18383330566760747 29 -0.8354911804199219 2 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 45.69961567697781 0.039180348357221985 1 EQNT{M(Oxidation (M))|F} 5 5 53.201 0 0 4.2886 0 0 603.2438832013687 0 603.2438832013687 0 49.221675119240516 0 0 0 1.25 0 0 0.4247425010840047 EQNT{M(Oxidation (M))|F} 4.2886 - 135 NaN NaN 92226.2 NaN 8170 2642 10812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10815 51.652 NaN 95853 35 0 9027.4 0.261 + -1 YTWFCPSYF 9 40 635.7650472167714 1269.5155415003428 2 635.765625 MULTI HCD FTMS 0 0 0 10812 28827.494140625 0.716712190540843 -4 0.12844085693359375 3 Carbamidomethyl (C) _YTWFC(Carbamidomethyl (C))PSYF_ REV__ENST00000369095.5_1_1:150254991-150255691:+|nuORF 4.3292370932331545 0.3181982124262546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 103112.8 NaN 8171 2642 10812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10816 51.656 NaN 83618 35 0 6578.4 0.264 -1 LECSWCGCML 10 41 453.17228686805197 1356.4950312043559 3 453.1730041503906 MULTI HCD FTMS 0 0 0 10812 6257.91455078125 0.29687007772606416 1 -0.0196990966796875 4 Acetyl (Protein N-term),3 Carbamidomethyl (C) _(Acetyl (Protein N-term))LEC(Carbamidomethyl (C))SWC(Carbamidomethyl (C))GC(Carbamidomethyl (C))ML_ ENST00000358746.6_1_5:94852111-94852410:-|nuORF;ENST00000506007.1_1_5:94852371-94852410:-|nuORF 0.6976657623105312 0.47161084886498755 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.0306 0 0 1191.4163549121668 0 1191.4163549121668 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0306 + + 5 + NaN NaN 93166.2 NaN 8172 2642 10812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10817 51.659 NaN 30605 35 0 4721.2 0.261 -1 EEDFCYAIEC 10 27 639.739013671875 NaN 0 639.739013671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _EEDFCYAIEC(Carbamidomethyl (C))_ ENSG00000165899|ENST00000547103|OTOGL 0.4007161486938917 0.3398413315442166 1 D 1 -1 3.4949 0 0 0.27379 0 0 539.6828660138686 618.7664278619749 1158.4492938758435 0 0 0 0 0 0 0 0 0 D 0.27379 + + 1 + NaN NaN 93650.6 NaN 8173 2642 10812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10819 51.664 NaN 868050 35 0 41145 0.327 + 7414 FVPANDNANL 10 85 537.7642133872557 1073.5138738413114 2 537.7642822265625 MULTI HCD FTMS 0 0 0 10818 260338.0625 0.8705623834639902 3 -0.09886550903320312 1 Unmodified _FVPANDNANL_ REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant 16.149105407346934 0.3600587335443843 1 [{M(Oxidation (M))|F}V]ESYA 6 -1 22.056 0 0 2.0546 0 0 0 374.1646666482051 374.1646666482051 4.12462815080637 0 0 0 0 0 0 0.3807196863200844 0 [{M(Oxidation (M))|F}V]ESYA 2.0546 - 744 NaN NaN 216371.2 NaN 8174 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10820 51.668 NaN 302900 35 0 38607 0.261 + 31876 VYNENLVHMI 10 57 624.3080337249818 1246.6015145167635 2 624.3084106445312 MULTI HCD FTMS 0 0 0 10818 182627.640625 0.7324499526402252 5 -0.15797805786132812 2 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 71.70789743142352 0.01556163018108538 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 10 0 + 79.078 0 0 6.3435 6.3435 87.849 0 0 0 6.0403972069151735 6.0403972069151735 6.0403972069151735 9.164539485499262 0 2.3494850021680094 2 0 1 + + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 6.3435;5.6083 +;- + 275 NaN NaN 132977.3 NaN 8175 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10821 51.672 NaN 599460 35 0 84760 0.261 + 13084 KYLEHPLLL 9 89 563.3370146105578 1124.6594762879156 2 563.3369750976562 MULTI HCD FTMS 0 0 0 10818 252461.875 0.9974161415808976 -1 0.0196990966796875 3 Unmodified _KYLEHPLLL_ ENSG00000114999|ENST00000233336|TTL 78.7280429016045 0.006263961847259105 1 KY{I|L}EH[{I|L}P]{I|L}{I|L} 9 0 + 48.572 0 0 4.3188 4.3188 83.584 0 0 0 21.851942139133968 5.6126795678005195 5.6126795678005195 7.426942011946686 0 2.094187677400525 0 0.3807196863200844 0 + + KY{I|L}EH[{I|L}P]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YK]H[{I|L}P]{I|L}{I|L};{I|L}[YK]EH[{I|L}P]{I|L}{I|L};[{I|L}P]{I|L}[H{I|L}]EYK{I|L};KY{I|L}[K{I|L}]{[DA]|[EG]}K{M(Oxidation (M))|F} 4.3188;3.6584;3.5453;3.0241;1.3296 +;-;-;-;- + 512 + NaN NaN 176303.5 NaN 8176 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10822 51.675 NaN 340000 35 0 71412 0.261 -1 0 61 560.2616691638758 559.2543926972758 1 560.2786865234375 MULTI HCD FTMS 0 0 0 10818 18488.546875 0.7893886212090648 -2 0.04925537109375 4 NaN NaN 1 Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 10.458 0 0 1.8699 0 0 118.06089848408546 0 118.06089848408546 0 3.4678748622465623 0 0 0 0 0 0 0 Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.8699 - 12 + NaN NaN 138483.4 NaN 8177 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10823 51.679 NaN 327300 35 0 35836 0.261 + 8609 HDEDEGFF 8 86 498.1909129239224 994.3672729146448 2 498.1912536621094 MULTI HCD FTMS 0 0 0 10818 94007.8515625 0.6550331599171914 4 -0.12511444091796875 5 Unmodified _HDEDEGFF_ ENSG00000135338|ENST00000369846|LCA5 10.183394434864962 0.5188676124868831 1 {M(Oxidation (M))|F}{I|L} 2 7 24.464 0 0 2.4603 0 0 716.2027704466145 0 716.2027704466145 0 7.296962438796157 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.4603 - 263 NaN NaN 132434.9 NaN 8178 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10824 51.682 NaN 255400 35 0 23252 0.261 + 4047 ESFKVGKNW 9 69 547.7850297317077 1093.5555065302153 2 547.7853393554688 MULTI HCD FTMS 0 0 0 10818 69145.4609375 0.6825663687672071 1 -0.03961181640625 6 Unmodified _ESFKVGKNW_ ENSG00000247746|ENST00000500968|USP51 32.30548876998284 0.10066689432505688 1 VTNW 4 6 56.23 0 0 5.1419 0 0 575.30571181465 0 575.30571181465 0 36.22486274231747 0 0 0 1.5 0 0.7742275032520141 0.3054621874040891 VTNW 5.1419 - 130 NaN NaN 130401.1 NaN 8179 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10825 51.685 NaN 124030 35 0 19085 0.261 + 772 ASPSLPPAGAI 11 38 490.77416639728 979.53377986136 2 490.7742614746094 MULTI HCD FTMS 0 0 0 10818 67723.25 0.5067017788212497 3 -0.09886550903320312 7 Unmodified _ASPSLPPAGAI_ ENSG00000104866|ENST00000221462|PPP1R37;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENST00000540059.1_1_19:45648535-45649727:+|nuORF;nc|ENSG00000104866|O75864-2|PPP1R37 8.155526934196011 0.3831532958467648 1 A{I|L} 2 9 25.969 0 0 2.6512 0 0 777.402650663945 0 777.402650663945 0 9.771212547196626 0 0 0 0.5 0 0 0 + A{I|L} 2.6512 + + 33 NaN NaN 107521.2 NaN 8180 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10826 51.689 NaN 188400 35 0 15356 0.261 -1 VVMFVAFMIS 10 56 580.2962072347921 NaN 0 580.2764892578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _VVM(Oxidation (M))FVAFMIS_ ENSG00000135218|ENST00000447544|CD36;nc|ENSG00000135218|P16671-3|CD36;nc|ENSG00000135218|P16671-4|CD36 5.731851221503515 0.33527861879838866 1 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 11.427 0 0 0.98627 0 0 101.08665419245183 663.3093355768186 764.3959897692705 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.98627 - 17 + NaN NaN 112973.7 NaN 8181 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10827 51.692 NaN 226490 35 0 55178 0.261 -1 TENDIRVMF 9 57 570.7713464969518 1139.5281400607034 2 570.7708129882812 MULTI HCD FTMS 0 0 0 10818 38715.1484375 0.37305979193131206 6 -0.17761611938476562 9 Oxidation (M) _TENDIRVM(Oxidation (M))F_ ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 21.590151480376914 0.17382222009858564 1 V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 25.049 0 0 2.1982 0 0 728.3461781232437 0 728.3461781232437 0 7.385606273598313 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1982 + + 55 NaN NaN 137578 NaN 8182 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10828 51.695 NaN 86610 35 0 9360.5 0.262 + 25052 SAAPAEQYL 9 39 475.2349906396307 948.4554283460615 2 475.2347106933594 MULTI HCD FTMS 0 0 0 10818 25434.5625 0.25832184398351626 3 -0.09886550903320312 10 Unmodified _SAAPAEQYL_ ENSG00000138081|ENST00000403359|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11 16.149105407346934 0.22083165093524068 1 QY{I|L} 3 6 34.693 0 0 3.6578 0 0 526.2405873029312 0 526.2405873029312 0 29.20818753952375 0 0 0 0.8494850021680094 0 0 0 + QY{I|L} 3.6578 + + 33 NaN NaN 101687.1 NaN 8183 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10829 51.699 NaN 120910 35 0 12577 0.261 + 20537 PDVIRIWDS 9 58 550.7903954525966 1099.5662379719931 2 550.7899169921875 MULTI HCD FTMS 0 0 0 10818 33982.68359375 0.731803473900991 1 -0.03961181640625 11 Unmodified _PDVIRIWDS_ ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13 4.3292370932331545 0.3181982124262546 1 [HA]NT{I|L} 5 8 36.893 0 0 3.3552 0 0 0 560.2845077822603 560.2845077822603 22.28855930516417 0 0 0 0 1.3807196863200843 0 0.3252574989159953 0 [HA]NT{I|L} 3.3552 - 86 + NaN NaN 104989.2 NaN 8184 2643 10818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10831 51.703 NaN 276190 35 0 22997 0.327 + 18585 MVSDEYEQL 9 71 565.2396314481397 1128.4647099630793 2 565.2396240234375 MULTI HCD FTMS 0 0 0 10830 83719.8203125 0.06930371251024926 17 -0.47321319580078125 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 52.268347100219714 0.028397529699942435 1 EYCCEQ{I|L} 7 6 47.752 0 0 4.2316 0 0 242.126756736525 0 242.126756736525 0 32.97569463554474 0 0 0 1.3252574989159953 0 1.055462187404089 0 EYCCEQ{I|L} 4.2316 - 175 NaN NaN 118961 NaN 8185 2644 10830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10832 51.708 NaN 750170 35 0 45463 0.261 + 26169 SPNAEIHIL 9 88 497.2724138615204 992.5302747898409 2 497.2723388671875 MULTI HCD FTMS 0 0 0 10830 162934.734375 1 0 0 2 Unmodified _SPNAEIHIL_ ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF;nc|ENSG00000079616|Q14807-2|KIF22 93.16586880292088 0.00444300900000894 1 [PS]NA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L} 9 0 + 70.701 0 0 7.1233 7.1233 87.198 0 0 0 4.470923918336865 4.470923918336865 4.470923918336865 4.470923918336865 0 2.1237125054200234 1.5228787452803376 0.8296896906561032 0.6307196863200843 + + [PS]NA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};SPNA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};SP[YK]GVVP{M(Oxidation (M))|F};SPP{[HG]|PP}GVVP{M(Oxidation (M))|F};[PS]GGA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};SPGGA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};[YV]VV{[WT]|[RM]}N{I|L};[YV]VR{[ET]|[MV]}N{I|L};[YV]VV{[WT]|[RM]}GG{I|L};[NP]SA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L} 7.1233;6.6729;6.15;6.1039;5.8878;5.7451;5.259;4.6524;4.3258;4.2338 +;+;-;-;-;-;-;-;-;- + 1145 NaN NaN 195796 NaN 8186 2644 10830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10833 51.712 NaN 342680 35 0 27583 0.261 + 22617 QVEEYEPEL 9 77 568.261457088658 1134.5083612441158 2 568.2615966796875 MULTI HCD FTMS 0 0 0 10830 107207.2890625 0.35489455111902013 20 -0.5553817749023438 3 Unmodified _QVEEYEPEL_ ENSG00000152760|ENST00000282670|DYNLT5;ENST00000528352.1_1_1:67241210-67243134:+|nuORF 13.90604991867851 0.24021115267848145 1 D{M(Oxidation (M))|F}MKE{I|L} 6 7 30.015 0 0 2.6457 0 0 353.15889174629064 0 353.15889174629064 0 11.85025691786431 0 0 0 0.3807196863200844 0 0 0 D{M(Oxidation (M))|F}MKE{I|L} 2.6457 - 614 NaN NaN 137037.6 NaN 8187 2644 10830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10834 51.715 NaN 719750 35 0 63367 0.261 + 3038 EAEPYDTSL 9 109 512.7272597967175 1023.439966660235 2 512.7271728515625 MULTI HCD FTMS 0 0 0 10830 132501.046875 0.6978167231773056 -3 0.0888671875 4 Unmodified _EAEPYDTSL_ ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2 74.92900055777586 0.007493270374442853 1 [DV]DPYDTS{I|L} 9 3 + 46.903 0 0 4.5829 4.5829 90.114 0 0 0 5.840638118825829 29.517319765491433 5.840638118825829 44.19071237228348 0 1.7658715643802765 0 1.2302046884880937 0 [DV]DPYDTS{I|L};{[ET]|[MV]}W[HD]HS{I|L} 4.5829;0.26506 -;- 562 NaN NaN 205306.2 NaN 8188 2644 10830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10835 51.718 NaN 257260 35 0 68260 0.261 + 13699 KYPKVWEGF 9 65 577.3056214668416 1152.596690000483 2 577.3057861328125 MULTI HCD FTMS 0 0 0 10830 134776.75 0.6381704833263332 -3 0.0888671875 5 Unmodified _KYPKVWEGF_ ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF 47.748688679222035 0.03472022231463587 1 WEG{M(Oxidation (M))|F} 4 5 28.386 0 0 2.4627 0 0 615.3746815412125 0 615.3746815412125 0 2.416440611282624 0 0 0 1.218765315847925 0 0 0 + WEG{M(Oxidation (M))|F} 2.4627 + + 71 NaN NaN 129544 NaN 8189 2644 10830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10836 51.721 NaN 94940 35 0 12958 0.263 + -1 TYICMGWCGMT 11 39 452.1692632148798 1353.4859602448394 3 452.1695251464844 MULTI HCD FTMS 0 0 0 10830 38050.53515625 0.22247674656452662 20 -0.5553817749023438 6 Carbamidomethyl (C),2 Oxidation (M) _TYIC(Carbamidomethyl (C))M(Oxidation (M))GWCGM(Oxidation (M))T_ REV__SLC45A1|p.A584T|1|0.18|ENSG00000162426|chr1:8337968-8337968|G/A|missense_variant 0.08335046087909445 0.4185551196980541 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94639 NaN 8190 2644 10830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10838 51.726 NaN 1298500 35 0 119430 0.327 + 22298 QPERDWVL 8 96 521.7694557425187 1041.5243585518374 2 521.76953125 MULTI HCD FTMS 0 0 0 10837 753172.4375 0.5981429748635948 5 -0.15119552612304688 1 Unmodified _QPERDWVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 52.268347100219714 0.11372384022409306 1 QPE[RD]WV{I|L} 8 0 + 31.662 0 0 3.0399 3.0399 87.964 0 0 0 14.063441621935187 8.984484532805155 8.984484532805155 31.661772202409466 0 0.5796896906561032 1 0.25 0 + + QPE[RD]WV{I|L} 3.0399 + + 320 + NaN NaN 293395 NaN 8191 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10839 51.731 NaN 1132400 35 0 97786 0.261 + 9435 HPVKIGDLF 9 113 513.2927409188765 1024.5709289045528 2 513.2932739257812 MULTI HCD FTMS 0 0 0 10837 357662.75 0.5802349165997808 -4 0.11186981201171875 2 Unmodified _HPVKIGDLF_ ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;nc|ENSG00000135250|P78362|SRPK2;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant 51.629811660486645 0.02929079705179888 1 {M(Oxidation (M))|F}SVKER{I|L}{M(Oxidation (M))|F} 8 5 + 40.18 0 0 3.9217 3.9217 80.971 0 0 0 9.803050585201923 2.8704836039595136 2.8704836039595136 2.524950997680321 0 1.5693415193665468 0 0.6307196863200843 0 {M(Oxidation (M))|F}SVKER{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RK]D{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[SG]R[YG]{I|L}{M(Oxidation (M))|F};[VP]QA{I|L}TH{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[SG]R{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{I|L}{I|L}[SG][VG]VPH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}KR[YG]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[SG][YG]R{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}G[K{I|L}]VPH{M(Oxidation (M))|F};[VP]QA{I|L}T{I|L}H{M(Oxidation (M))|F} 3.9217;3.6752;3.6415;2.7811;2.6157;2.5796;2.2971;2.2471;2.2308;1.9065 -;-;-;-;-;-;-;-;-;- 1021 + NaN NaN 278804.5 NaN 8192 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10840 51.734 NaN 263200 35 0 27420 0.261 + 21686 QAAPDLHVL 9 65 482.2666516414659 962.5187503497318 2 482.26666259765625 MULTI HCD FTMS 0 0 0 10837 100577.34375 0.08971257856775634 9 -0.2495880126953125 3 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 10.823927491677226 0.26684000660059787 1 [H{I|L}]V[{M(Oxidation (M))|F}V]PA 7 9 20.106 0 0 2.0888 0 0 0 196.07347772491872 196.07347772491872 3.556066401185163 0 0 0 0 0.3494850021680094 0 0 0 [H{I|L}]V[{M(Oxidation (M))|F}V]PA 2.0888 - 110 NaN NaN 136333 NaN 8193 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10841 51.738 NaN 506210 35 0 71745 0.261 + 21884 QDAITLTTF 9 79 505.2634927403826 NaN 0 505.27667236328125 PEAK HCD FTMS 0 0 0 10837 6741.45703125 1 0 0 4 Unmodified _QDAITLTTF_ REV__ENSG00000131759|ENST00000254066|RARA;REV__nc|ENSG00000131759|P10276-2|RARA;REV__nc|ENSG00000131759|P10276-3|RARA 8.593279151180031 0.2536050107310812 1 TN{M(Oxidation (M))|F} 3 -1 12.039 0 0 1.1937 0 0 165.1206085457115 478.24213586978755 643.362744415499 0 0 0 0 0 0 0 0 0.4247425010840047 TN{M(Oxidation (M))|F} 1.1937 - 116 + NaN NaN 153416.9 NaN 8194 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10842 51.741 NaN 723930 35 0 69214 0.261 + 9965 IEHGIITNW 9 75 541.785089033384 1081.555625133568 2 541.7852783203125 MULTI HCD FTMS 0 0 0 10837 195184.140625 0.07501730135806953 -5 0.1448211669921875 5 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 64.23631603340823 0.01165516075559909 1 {I|L}VTNW 5 5 59.425 0 0 5.4944 0 0 450.22407729316564 0 450.22407729316564 0 39.9607625286837 0 0 0 1.4247425010840047 0 0.8494850021680094 0.3494850021680094 {I|L}VTNW 5.4944 - 360 NaN NaN 194347 NaN 8195 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10843 51.744 NaN 576370 35 0 72697 0.261 + 8254 GTDPGWQIQL 10 80 557.7794636150969 1113.5443742969937 2 558.7791137695312 MULTI HCD FTMS 0 0 0 10837 153976.890625 0.35857403656606845 -5 0.1448211669921875 6 Unmodified _GTDPGWQIQL_ REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF 10.073929032068715 0.4168838835836452 1 Q{I|L}Q[HQ]N{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 28.804 0 0 2.5867 0 0 129.09602146583626 0 129.09602146583626 0 4.221923315882297 0 0 0 0.7059771852360797 0 0.7302046884880937 0.3807196863200844 Q{I|L}Q[HQ]N{[MS]|[{M(Oxidation (M))|F}A]} 2.5867 - 228 + NaN NaN 176347.7 NaN 8196 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10844 51.748 NaN 240380 35 0 31961 0.261 + 29028 TYFDKNYNL 9 69 589.2797870328907 1176.5450211325813 2 589.2798461914062 MULTI HCD FTMS 0 0 0 10837 77371.8359375 0.3960213185266061 5 -0.15119552612304688 7 Unmodified _TYFDKNYNL_ ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 31.26834338654808 0.10542797264966089 1 [YT]{M(Oxidation (M))|F} 3 6 38.512 0 0 3.2733 0 0 0 762.3421114557249 762.3421114557249 15.324609153403514 0 0 0 0 0.805462187404089 2 0 0 + [YT]{M(Oxidation (M))|F} 3.2733 + + 122 + NaN NaN 118015.4 NaN 8197 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10845 51.751 NaN 163630 35 0 18387 0.262 -1 VMMLFLTI 8 47 500.26644677692974 998.5183406206595 2 500.2665710449219 MULTI HCD FTMS 0 0 0 10837 79742.8828125 1 0 0 8 2 Oxidation (M) _VM(Oxidation (M))M(Oxidation (M))LFLTI_ ENSG00000149534|ENST00000278888|MS4A2 14.581692164780916 0.48650662947107914 1 T{I|L} 2 -1 29.776 0 0 2.982 0 0 766.3757500426548 0 766.3757500426548 0 -0.5782783459272167 -0.5782783459272167 0 0 0.5 0 0.3807196863200844 0 T{I|L} 2.982 + + 86 NaN NaN 111060.8 NaN 8198 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10846 51.754 NaN 145130 35 0 20760 0.261 + 7926 GAYQLKANS 9 51 476.2480054862197 NaN 0 476.2378234863281 PEAK HCD FTMS 0 0 0 10837 8656.7353515625 1 0 0 9 Unmodified _GAYQLKANS_ REV__ENSG00000130226|ENST00000377770|DPP6;REV__nc|ENSG00000130226|P42658-2|DPP6 3.944395688203298 0.27613285122220627 1 AW 2 -1 6.4537 0 0 0.67899 0 0 131.11476281298513 559.2306715650312 690.3454343780163 0 0 0 0 0 0 0 0 0 AW 0.67899 - 19 + NaN NaN 103143.5 NaN 8199 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10847 51.758 NaN 126800 35 0 23668 0.261 -1 LLWWDMRPQ 9 48 434.88214623931003 NaN 0 434.8821105957031 PEAK HCD FTMS 0 0 0 10837 48029.59375 0.4493542466171551 178 -4.669277191162109 10 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LLWWDM(Oxidation (M))RPQ_ ENST00000441302.6_1_3:39139474-39139633:-|nuORF 0.776531954647913 0.29148387678683924 1 D 1 -1 1.7827 0 0 0.20544 0 0 545.8409088342858 203.86370264224846 749.7046114765342 0 0 0 0 0 0 0 0 0 D 0.20544 + + 1 + NaN NaN 106450.5 NaN 8200 2645 10837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10849 51.763 NaN 759660 35 0 184070 0.327 + 7118 FRTSYSSGPF 10 71 574.771658418407 1147.528763903614 2 574.7720947265625 MULTI HCD FTMS 0 0 0 10848 353827.90625 0.37143404236027033 7 -0.18708038330078125 1 Unmodified _FRTSYSSGPF_ REV__ENSG00000115970|ENST00000405975|THADA;REV__ENST00000408045.7_1_2:43571220-43805671:-|nuORF;REV__nc|ENSG00000115970|Q6YHU6-2|THADA;REV__nc|ENSG00000115970|Q6YHU6-3|THADA;REV__nc|ENSG00000115970|Q6YHU6-5|THADA;REV__nc|ENSG00000115970|Q6YHU6-6|THADA 26.268140514670165 0.2654086933305545 1 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 -1 81.921 0 0 7.1389 0 0 220.0834667237653 0 220.0834667237653 0 62.981231377493074 0 0 0 2.8494850021680094 0 1.9604093769761874 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 7.1389 - 635 + NaN NaN 196817.3 NaN 8201 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10850 51.767 NaN 213020 35 0 46066 0.261 + 15719 LPEWKENIM 9 55 588.2917915267129 1174.5690301202258 2 588.2919311523438 MULTI HCD FTMS 0 0 0 10848 93153.890625 0.7619599558302532 -2 0.059253692626953125 2 Oxidation (M) _LPEWKENIM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 47.594388314883695 0.03493607795751234 1 {I|L}PEW 4 5 63.914 0 0 5.4415 0 0 0 646.2880655014078 646.2880655014078 37.94531259372398 0 0 0 0 1.3252574989159953 1.5228787452803376 0.3494850021680094 0 + {I|L}PEW 5.4415 + + 104 + NaN NaN 114822.8 NaN 8202 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10851 51.771 NaN 281990 35 0 16142 0.261 + 20616 PETRTDPEL 9 85 529.2619110034669 1056.5092690737338 2 529.7671508789062 MULTI HCD FTMS 0 0 0 10848 69133.125 0.46961634709654865 5 -0.13459014892578125 3 Unmodified _PETRTDPEL_ ENSG00000090539|ENST00000204604|CHRD;ENST00000460627.5_1_3:184104458-184107207:+|nuORF;nc|ENSG00000090539|Q9H2X0-5|CHRD 22.736283301280096 0.1639198954644489 1 {I|L}TA{M(Oxidation (M))|F} 4 8 25.918 0 0 2.4531 0 0 606.2937977375994 0 606.2937977375994 0 13.144490976677046 0 0 0 0 0 0 0 {I|L}TA{M(Oxidation (M))|F} 2.4531 - 426 + NaN NaN 122233.2 NaN 8203 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10852 51.774 NaN 608750 35 0 105310 0.261 + 4166 ETQLPVSFR 9 70 538.7902700131823 1075.5659870931645 2 538.790283203125 MULTI HCD FTMS 0 0 0 10848 141547.875 1 0 0 4 Unmodified _ETQLPVSFR_ ENSG00000144028|ENST00000323853|SNRNP200 17.44264345198275 0.2096557692338702 1 {[ET]|[MV]}Q{I|L}[VP]SR{M(Oxidation (M))|F} 9 2 + 21.471 0 0 1.9963 1.9963 84.197 0 0 0 6.867195477388318 8.362424760180446 6.867195477388318 9.208187539523754 0 0.5941876774005248 0 0 0 {[ET]|[MV]}Q{I|L}[VP]SR{M(Oxidation (M))|F};{[ET]|[MV]}[AG]{I|L}[VP]SR{M(Oxidation (M))|F} 1.9963;1.1402 -;- 185 + NaN NaN 178252.9 NaN 8204 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10853 51.777 NaN 128150 35 0 29806 0.261 -1 LYALTCCI 8 45 478.73236947866405 955.4501860241281 2 478.73223876953125 MULTI HCD FTMS 0 0 0 10848 65907.875 0.7509404103953725 3 -0.0787506103515625 5 Carbamidomethyl (C) _LYALTC(Carbamidomethyl (C))CI_ ENSG00000100926|ENST00000261789|TM9SF1;ENST00000531406.1_1_14:24661338-24662280:-|nuORF;nc|ENSG00000100926|O15321-2|TM9SF1 15.768221252438446 0.4777766048089751 1 [Y{I|L}]A{I|L} 4 -1 27.932 0 0 2.9234 0 0 0 492.15179059860003 492.15179059860003 1.9627248839266542 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]A{I|L} 2.9234 + + 38 NaN NaN 111053.3 NaN 8205 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10854 51.781 NaN 201940 35 0 63397 0.261 -1 0 46 492.2130568579158 491.2057803913158 1 492.21319580078125 MULTI HCD FTMS 0 0 0 10848 98621.8671875 1 0 0 6 NaN NaN 1 YY{M(Oxidation (M))|F} 3 -1 + 48.188 0 0 9.8101 9.8101 98.402 0 0 0 6.4928876664371415 6.4928876664371415 6.4928876664371415 48.187587626244124 0 0.5 1.6989700043360187 0 0 YY{M(Oxidation (M))|F} 9.8101 - 8 + NaN NaN 114979.5 NaN 8206 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10855 51.784 NaN 142120 35 0 13148 0.261 -1 TYMKDLYQL 9 50 595.7919115901797 1189.5692702471592 2 595.791748046875 MULTI HCD FTMS 0 0 0 10848 48492.8359375 0.37355376983955035 17 -0.4732017517089844 7 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 36.506200033944 0.08138327636155518 1 [YT]HH[QT]YQ 8 -1 33.79 0 0 2.8405 0 0 0 128.07070265459302 128.07070265459302 18.30559233425481 0 0 0 0 1.2887254899964358 2 0.4247425010840047 0 [YT]HH[QT]YQ 2.8405 - 76 NaN NaN 117491.4 NaN 8207 2646 10848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10857 51.789 NaN 2032700 35 0 197760 0.326 + 35108 YVDPVNKVL 9 95 523.7975994943004 1045.5806460554006 2 523.7974853515625 MULTI HCD FTMS 0 0 0 10856 1354635.5 1 0 0 1 Unmodified _YVDPVNKVL_ ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 96.36657018975838 0.004359138328518304 1 [YV]DVPNKV{I|L} 9 2 + 91.798 0 0 8.7797 8.7797 90.392 0 0 0 12.754289147761128 12.754289147761128 12.754289147761128 5.6430175122012685 0 2.1237125054200234 2 0.3054621874040891 0.6694451763165201 [YV]DVPNKV{I|L};[YV]DVPNVK{I|L};[YV]DVPVNK{I|L};[YV]DVPGGKV{I|L};[YV]VDPNKV{I|L};YVDPVNKV{I|L};[YV]DVPNK{I|L}V;[YV]DVPGGVK{I|L};[YV]VDPNVK{I|L};[YV]DVPVGGK{I|L} 8.7797;8.24;7.9532;7.899;7.633;7.5598;7.5476;7.1202;7.0932;6.8334 -;-;-;-;-;+;-;-;-;- + 2263 NaN NaN 395663.8 NaN 8208 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10858 51.793 NaN 1411700 35 0 137770 0.261 + 23739 RRCTVYVSM 9 104 557.7794636150969 1113.5443742969937 2 557.7801513671875 MULTI HCD FTMS 0 0 0 10856 674444.25 0.4494881734268051 -4 0.12511444091796875 2 Unmodified _RRCTVYVSM_ REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF 26.88365393820708 0.12808753336095696 1 {I|L}VTNA{M(Oxidation (M))|F} 6 -1 58.298 0 0 5.2354 0 0 450.2215748517594 0 450.2215748517594 0 30.189053588203514 0 0 0 1.4247425010840047 0 0.7302046884880937 0.3807196863200844 {I|L}VTNA{M(Oxidation (M))|F} 5.2354 - 529 NaN NaN 301601.8 NaN 8209 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10859 51.797 NaN 1192500 35 0 160260 0.261 + 32382 VYVVGTAHF 9 80 496.76330804201615 991.5120631508323 2 496.76373291015625 MULTI HCD FTMS 0 0 0 10856 551804.9375 0.9096233681108402 -2 0.0625 3 Unmodified _VYVVGTAHF_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 146.00731375242447 1.3047045798573153E-05 1 VYVVGTAH{M(Oxidation (M))|F} 9 0 + 115.13 0 0 11.612 11.612 97.275 0 0 0 82.53739224824487 16.478174818886373 16.478174818886373 19.423487412610356 0 2.9802046884880937 1.6989700043360187 1.2302046884880937 0 + + VYVVGTAH{M(Oxidation (M))|F};VYVV[QT]H{M(Oxidation (M))|F};[YV]VVGTAH{M(Oxidation (M))|F};[YV]VVSAAH{M(Oxidation (M))|F};VYVR[DP]P{M(Oxidation (M))|F};VY[DP]RVP{M(Oxidation (M))|F};VVYVGTAH{M(Oxidation (M))|F};[YV][DP]RVP{M(Oxidation (M))|F};[YV]VV[QT]H{M(Oxidation (M))|F};VVYVSAAH{M(Oxidation (M))|F} 11.612;9.6531;8.9055;8.3439;8.3049;7.782;7.1867;7.021;6.9007;6.6252 +;-;+;-;-;-;-;-;-;- + 1332 + NaN NaN 275784.4 NaN 8210 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10860 51.8 NaN 767800 35 0 71392 0.261 + 33392 YGNTLVEFR 9 79 549.782591221783 1097.550629510366 2 549.7825927734375 MULTI HCD FTMS 0 0 0 10856 225619.484375 0.36594467531398517 -3 0.08550262451171875 4 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 41.8396318013385 0.056899836730939755 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 52.773 0 0 4.8083 0 0 563.3069611449386 0 563.3069611449386 0 5.259577693067676 0 0 0 1.8252574989159953 0 0.805462187404089 0.4247425010840047 VTN{[DS]|[MA]|[CV]|TT} 4.8083 - 212 NaN NaN 203468.4 NaN 8211 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10861 51.804 NaN 463220 35 0 50991 0.261 -1 MCVPDQDTAI 10 74 583.2469307729231 1164.479308612646 2 583.2467651367188 MULTI HCD FTMS 0 0 0 10856 76623.2265625 0.8410180910539775 -3 0.08550262451171875 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))VPDQDTAI_ nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM 14.405379775768559 0.37636895476610294 1 DTA{I|L} 4 -1 35.904 0 0 3.0833 0 0 746.2711659162125 0 746.2711659162125 0 3.66319406694884 0 0 0 0.75 0 0.4247425010840047 0 DTA{I|L} 3.0833 + + 619 NaN NaN 153277.5 NaN 8212 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10862 51.807 NaN 179770 35 0 15047 0.262 + 21687 QAAPDLHVL 9 61 482.2666516414659 962.5187503497318 2 482.7768859863281 MULTI HCD FTMS 0 0 0 10856 16192.849609375 0.030440312140403086 13 -0.3614006042480469 6 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F} 1 9 18.372 0 0 1.9087 0 0 797.4400893163319 0 797.4400893163319 0 6.957392241200093 0 0 0 0.28872548999643577 0 0 0 {M(Oxidation (M))|F} 1.9087 - 113 + NaN NaN 111975.4 NaN 8213 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10863 51.81 NaN 191540 35 0 25396 0.261 + 34424 YPESESIMM 9 53 551.7252500357886 1101.435947138377 2 551.7251586914062 MULTI HCD FTMS 0 0 0 10856 83484.875 0.8664190989862892 -3 0.08550262451171875 7 Oxidation (M) _YPESESIMM(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 42.09456458481378 0.05572955244001856 1 S{I|L}M{M(Oxidation (M))|F} 4 5 60.433 0 0 5.4868 0 0 605.2335829717179 0 605.2335829717179 0 53.44335023848103 0 0 0 2 0 0.8494850021680094 0 + S{I|L}M{M(Oxidation (M))|F} 5.4868 + + 44 NaN NaN 111012.8 NaN 8214 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10864 51.814 NaN 119000 35 0 11326 0.261 -1 AYPHNLMTF 9 49 555.2577483138126 1108.5009436944251 2 555.2575073242188 MULTI HCD FTMS 0 0 0 10856 32213.220703125 0.02239454708237385 100 -2.6721115112304688 8 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 30.636539890814138 0.10832830463492794 1 HQT{M(Oxidation (M))|F} 4 -1 30.935 0 0 2.7907 0 0 577.2499804149314 0 577.2499804149314 0 4.195925227640984 0 0 0 0.805462187404089 0 0.2614393726401688 0 HQT{M(Oxidation (M))|F} 2.7907 - 81 + NaN NaN 117321.7 NaN 8215 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10865 51.817 NaN 312350 35 0 50876 0.261 + 10603 IPNPQERTLTL 11 54 641.3618472699594 1280.7091416067187 2 641.3611450195312 MULTI HCD FTMS 0 0 0 10856 85974.59375 0.07630175367285741 -6 0.17436981201171875 9 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 52.19289622718417 0.07241336989735415 1 {I|L}PNPQE 6 5 62.498 0 0 4.8799 0 0 0 599.3534029596311 599.3534029596311 36.8360688456422 0 0 0 0 1.305462187404089 0 1.1307196863200843 0 + {I|L}PNPQE 4.8799 + + 152 + NaN NaN 127901.9 NaN 8216 2647 10856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10867 51.822 NaN 286930 35 0 37660 0.326 + 13085 KYLEHPLLL 9 74 563.3370146105578 1124.6594762879156 2 563.3370361328125 MULTI HCD FTMS 0 0 0 10866 118948.3359375 0.4699362637556648 4 -0.1050872802734375 1 Unmodified _KYLEHPLLL_ ENSG00000114999|ENST00000233336|TTL 56.17704186161178 0.022929533404884107 1 H[{I|L}P]{I|L}{I|L} 5 4 33.64 0 0 2.9911 0 0 533.284471580275 0 533.284471580275 0 14.176127934005436 0 0 0 1.3807196863200843 0 0 0 + H[{I|L}P]{I|L}{I|L} 2.9911 + + 98 NaN NaN 129252.1 NaN 8217 2648 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10868 51.826 NaN 203710 35 0 24398 0.261 + 31877 VYNENLVHMI 10 52 624.3080337249818 1246.6015145167635 2 624.3081665039062 MULTI HCD FTMS 0 0 0 10866 132481.96875 0.5313347497921841 10 -0.26927947998046875 2 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 71.70789743142352 0.01556163018108538 1 VYNEN{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 10 0 + 89.73 0 0 7.198 7.198 89.47 0 0 0 80.06411921103663 4.259687322722812 4.259687322722812 9.164539485499262 0 2.4604093769761874 2 0 0 + + VYNEN{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};VYGGEN{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};VYNEGG{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};VYGGEGG{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]NEN{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};VY{[VA]|[{I|L}G]}V[NS]VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]GGEN{I|L}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]N[DN]{I|L}{I|L}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7.198;6.4628;6.4628;5.7305;5.6369;5.4201;4.9017;3.0559 +;-;-;-;+;-;-;- + 386 + NaN NaN 138400 NaN 8218 2648 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10869 51.83 NaN 110350 35 0 13277 0.264 -1 LPAAGVGDMV 10 36 473.2391347253083 944.4637165174166 2 473.2394104003906 MULTI HCD FTMS 0 0 0 10866 48746.2109375 0.8369203658001856 -5 0.15797805786132812 3 Oxidation (M) _LPAAGVGDM(Oxidation (M))V_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 37.97399986684836 0.1629881689457739 1 AR[DG]{M(Oxidation (M))|F}V 6 -1 38.645 0 0 4.0918 0 0 281.1736012189469 0 281.1736012189469 0 30.686362358410122 0 0 0 1.5 0 0 0 AR[DG]{M(Oxidation (M))|F}V 4.0918 - 42 NaN NaN 107832.4 NaN 8219 2648 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10870 51.833 NaN 141240 35 0 9596.6 0.261 + 33838 YLKLYHPE 8 52 531.7829910857306 1061.551429238261 2 531.7941284179688 MULTI HCD FTMS 0 0 0 10866 7428.0966796875 0.3418404120868083 -2 0.059112548828125 4 Unmodified _YLKLYHPE_ ENSG00000165152|ENST00000374848|PGAP4 9.347437153973935 0.5250182646323369 1 [Y{I|L}][HV]C(Carbamidomethyl (C))EQ 7 5 22.72 0 0 2.1403 0 0 0 129.1363240676716 129.1363240676716 8.027194418743804 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}][HV]C(Carbamidomethyl (C))EQ 2.1403 - 38 NaN NaN 115627.7 NaN 8220 2648 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10871 51.837 NaN 97439 35 0 12654 0.261 + 8681 HFLQIMINAI 10 46 600.3320611167172 1198.6495693002344 2 600.332275390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _HFLQIMINAI_ ENST00000360416.7_1_17:8378590-8378773:-|nuORF 1.6526216038709556 0.46655611578153744 1 A 1 9 6.9897 0 0 0.58313 0 0 132.24052984725182 992.3497426107252 1124.590272457977 0 0 0 0 0 0 0 0 0 + A 0.58313 + + 14 + NaN NaN 108986.5 NaN 8221 2648 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10873 51.841 NaN 518140 35 0 46002 0.327 + 30954 VRNHTRNCE 9 80 564.770277906219 1127.526002879238 2 564.7693481445312 MULTI HCD FTMS 0 0 0 10872 221036.265625 0.8030278104938242 -1 0.0196380615234375 1 Unmodified _VRNHTRNCE_ REV__ENSG00000164761|ENST00000297350|TNFRSF11B 37.97399986684836 0.07464525285885698 1 QE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TN[EC] 8 -1 48.516 0 0 4.3029 0 0 130.1554717286504 0 130.1554717286504 0 34.251159158548184 0 0 0 1.5 0 0.9143943297944485 0.6747425010840047 QE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TN[EC] 4.3029 - 313 + NaN NaN 172746.7 NaN 8222 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10874 51.846 NaN 908990 35 0 183230 0.261 -1 TSRPQPSSSAM 11 89 582.7694480443604 1163.5243431555207 2 582.7681884765625 MULTI HCD FTMS 0 0 0 10872 334900.96875 0.22026875719682015 -5 0.13800430297851562 2 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 19.361941925380144 0.2883811769592959 1 STSVSA{M(Oxidation (M))|F} 7 -1 74.526 0 0 6.4052 0 0 466.2332291579628 0 466.2332291579628 0 62.53669175573954 0 0 0 2.774227503252014 0 0.6307196863200843 0 STSVSA{M(Oxidation (M))|F} 6.4052 - 1883 NaN NaN 239755.9 NaN 8223 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10875 51.849 NaN 302210 35 0 27784 0.261 -1 IPHMDIEAL 9 66 527.7666675310228 1053.5187821288455 2 527.7653198242188 MULTI HCD FTMS 0 0 0 10872 127326.1953125 0.255319940567109 -9 0.2598228454589844 3 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 20.453626601364224 0.18364154288633264 1 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 7 -1 38.822 0 0 3.685 0 0 202.1320057599625 0 202.1320057599625 0 15.520993624138043 0 0 0 1.2887254899964358 0 0.5 0 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 3.685 - 271 NaN NaN 141604.7 NaN 8224 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10876 51.853 NaN 403670 35 0 24332 0.261 -1 KKCPFTGN 8 79 476.2381036233621 950.4616543135243 2 476.75189208984375 MULTI HCD FTMS 0 0 0 10872 7194.24267578125 0.20957899367095667 3 -0.08544921875 4 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))PFTGN_ ENSG00000142534|ENST00000270625|RPS11;ENST00000420757.1_1_1:240799967-240800270:-|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 18.13498045792455 0.4603629008820478 1 T[NG] 3 -1 18.557 0 0 1.9524 0 0 660.3390784852024 0 660.3390784852024 0 2.983324797206283 0 0 0 0 0 0.2614393726401688 0.8494850021680094 T[NG] 1.9524 + + 159 + NaN NaN 161280.5 NaN 8225 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10877 51.856 NaN 231370 35 0 40473 0.261 + 11689 KADGVPVYL 9 43 481.2714437896963 960.5283346461927 2 481.27117919921875 MULTI HCD FTMS 0 0 0 10872 103151.1015625 0.6955761173894385 -3 0.0787506103515625 5 Unmodified _KADGVPVYL_ ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF 18.1463463914782 0.20357593197100715 1 DRPVY{I|L} 6 4 30.679 0 0 3.194 0 0 199.13183791328282 0 199.13183791328282 0 25.194634427571856 0 0 0 0.8935078169319297 0 0.3494850021680094 0 DRPVY{I|L} 3.194 - 44 NaN NaN 123255.3 NaN 8226 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10878 51.859 NaN 283970 35 0 29395 0.261 + 8364 GYLADPAKF 9 56 491.2555605663153 980.4965681994306 2 491.2554016113281 MULTI HCD FTMS 0 0 0 10872 119371.53125 0.6154737166557022 -4 0.11500167846679688 6 Unmodified _GYLADPAKF_ ENSG00000137547|ENST00000260102|MRPL15 51.629811660486645 0.02929079705179888 1 [YG]{I|L}AD[PA]K{M(Oxidation (M))|F} 9 0 + 83.606 0 0 8.5269 8.5269 89.937 0 0 0 2.2577249674798594 2.2577249674798594 2.2577249674798594 5.484550065040281 0 2.774227503252014 2 0 0 + + [YG]{I|L}AD[PA]K{M(Oxidation (M))|F};[YG]{I|L}KDA[PA]{M(Oxidation (M))|F};[YG]{I|L}ADK[PA]{M(Oxidation (M))|F};[YG]{I|L}A[TA]A[PA]{M(Oxidation (M))|F};[YG]{I|L}KW{I|L}{[DS]|[MA]|[CV]|TT};[RH][WP]A[PA]{M(Oxidation (M))|F} 8.5269;7.9675;7.9675;6.0085;5.8537;3.2779 +;-;-;-;-;- + 184 NaN NaN 125781.7 NaN 8227 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10879 51.863 NaN 214850 35 0 22673 0.261 + 3524 EIGTNEESEQ 10 60 568.241748486408 NaN 0 568.2615356445312 PEAK HCD FTMS 0 0 0 10872 20550.80859375 0.7484329128803767 -4 0.11500167846679688 7 Unmodified _EIGTNEESEQ_ REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3 5.731851221503515 0.33527861879838866 1 EK 2 -1 10.969 0 0 0.96689 0 0 131.05627148460115 743.2589205377561 874.3151920223572 0 0 0 0 0 0 0 0 0 EK 0.96689 - 31 + NaN NaN 120504 NaN 8228 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10880 51.866 NaN 408420 35 0 58357 0.261 -1 VMAPRTVLL 9 59 508.30222238571173 1014.5898918382235 2 508.3028869628906 MULTI HCD FTMS 0 0 0 10872 90768.1875 0.20597773120569202 -10 0.2960929870605469 8 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 18.1463463914782 0.20357593197100715 1 [{M(Oxidation (M))|F}V]ARP[{I|L}T]V{I|L} 9 -1 + 40.436 0 0 3.9855 3.9855 89.207 0 0 0 3.996072981311336 23.446535553355226 3.996072981311336 40.43623559671541 0 1.3494850021680094 0 0.3252574989159953 0 [{M(Oxidation (M))|F}V]ARP[{I|L}T]V{I|L} 3.9855 - 38 NaN NaN 141778 NaN 8229 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10881 51.869 NaN 140560 35 0 21805 0.261 + 6696 FPNREDYIHL 10 51 435.2186189345648 1302.6340274038944 3 435.2187805175781 MULTI HCD FTMS 0 0 0 10872 44144.72265625 0.9668213437227038 1 -0.03619384765625 9 Unmodified _FPNREDYIHL_ ENSG00000175606|ENST00000312184|TMEM70;nc|ENSG00000175606|Q9BUB7-2|TMEM70 3.072263186857199 0.4590417271953214 1 PE 2 8 24.222 0 0 1.8594 0 0 1058.5124805656767 0 1058.5124805656767 0 10.24227503252014 0 0 0 0.3252574989159953 0 0 0 PE 1.8594 - 7 NaN NaN 112441.1 NaN 8230 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10882 51.873 NaN 73596 35 0 8433.2 0.261 -1 YWMHVQNTF 9 42 621.2742868178269 1240.5340207024537 2 621.2750244140625 MULTI HCD FTMS 0 0 0 10872 34753.484375 0.09984003853870026 36 -1.0188064575195312 10 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 10.073929032068715 0.27331982688540024 1 QNT{M(Oxidation (M))|F} 4 -1 36.938 0 0 2.9776 0 0 732.3060780255875 0 732.3060780255875 0 35.96910013008056 0 0 0 0.5 0 0 0 QNT{M(Oxidation (M))|F} 2.9776 + + 11 NaN NaN 98798.4 NaN 8231 2649 10872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10884 51.878 NaN 1039100 35 0 120520 0.327 + 9436 HPVKIGDLF 9 98 513.2927409188765 1024.5709289045528 2 513.292724609375 MULTI HCD FTMS 0 0 0 10883 456193.9375 0.7400816866689027 1 -0.01964569091796875 1 Unmodified _HPVKIGDLF_ ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;nc|ENSG00000135250|P78362|SRPK2;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant 60.07390631473393 0.0174780869009295 1 {I|L}{I|L}[SG]R[YG]{I|L}{M(Oxidation (M))|F} 9 6 + 44.886 0 0 4.381 4.381 86.436 0 0 0 12.97369639574029 4.39233239881915 4.39233239881915 10.726052125589973 0 1.305462187404089 1.0969100130080565 1.25 0 {I|L}{I|L}[SG]R[YG]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[SG][VG]VPH{M(Oxidation (M))|F};{I|L}{I|L}[SG]R{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}KR[YG]{I|L}{M(Oxidation (M))|F};[VP]K[PS]TH{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}G[K{I|L}]VPH{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[VA]|[{I|L}G]}R[YG]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}K[VG][YG]{I|L}{M(Oxidation (M))|F};[VP]{NN|[MP]|[D{I|L}]|[EV]}[KG]H{I|L}{M(Oxidation (M))|F};[VP]K[PS]T{I|L}H{M(Oxidation (M))|F} 4.381;3.3341;3.2722;2.975;2.8895;2.5758;2.2136;2.071;2.0354;2.0299 -;-;-;-;-;-;-;-;-;- 695 NaN NaN 267883.7 NaN 8232 2650 10883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10885 51.882 NaN 400480 35 0 49805 0.261 + -1 QMNQLFQTK 9 76 577.2858055246371 1152.5570581160741 2 577.3057861328125 MULTI HCD FTMS 0 0 0 10883 120468.75 1 0 0 2 Oxidation (M) _QM(Oxidation (M))NQLFQTK_ REV__ENSG00000162062|ENST00000361837|TEDC2;REV__ENST00000565716.1_1_16:2511058-2514276:+|nuORF;REV__nc|ENSG00000162062|Q7L2K0-2|TEDC2;REV__nc|ENSG00000162062|Q7L2K0-3|TEDC2 13.042465956692817 0.2476723265019929 1 GA{M(Oxidation (M))|F}NT 5 -1 43.404 0 0 3.7659 0 0 0 659.3499849908811 659.3499849908811 24.88728383729587 0 0 0 0 0.566901560044258 0 0.3494850021680094 0.3807196863200844 GA{M(Oxidation (M))|F}NT 3.7659 - 356 + NaN NaN 166793.3 NaN 8233 2650 10883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10886 51.886 NaN 267880 35 0 54628 0.261 -1 RFDEAYIYM 9 40 612.2739516928943 1222.5333504525886 2 612.2743530273438 MULTI HCD FTMS 0 0 0 10883 92496.515625 0.7293988953749377 -3 0.08869552612304688 3 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 15.248480904072842 0.22861284681709862 1 AY{I|L}Y{M(Oxidation (M))|F} 5 -1 45.573 0 0 3.7278 0 0 547.2386341779312 0 547.2386341779312 0 38.58349385648225 0 0 0 1 0 0 0 AY{I|L}Y{M(Oxidation (M))|F} 3.7278 + + 87 NaN NaN 118662.2 NaN 8234 2650 10883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10887 51.889 NaN 184140 35 0 52960 0.264 + -1 MRPDDPPMMEL 11 39 455.19447235924906 1362.5615876779473 3 455.1945495605469 MULTI HCD FTMS 0 0 0 10883 45303.8359375 0.5572096637096237 -2 0.0558319091796875 4 2 Oxidation (M) _MRPDDPPM(Oxidation (M))M(Oxidation (M))EL_ REV__ENSG00000130226|ENST00000377770|DPP6;REV__nc|ENSG00000130226|P42658-2|DPP6 1.0135738785822086 0.41447547578978133 1 {I|L}{I|L} 2 -1 20.969 0 0 1.5389 0 0 1118.3830385478566 0 1118.3830385478566 0 13.979400086720375 0 0 0 0 0 0 0 {I|L}{I|L} 1.5389 - 4 NaN NaN 108647.9 NaN 8235 2650 10883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10888 51.892 NaN 98020 35 0 13530 0.261 + 34172 YPDGNEGAIRF 11 45 619.7938817722211 1237.573210611242 2 619.7940063476562 MULTI HCD FTMS 0 0 0 10883 59996.2734375 0.8331642309926401 -9 0.2630653381347656 5 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 15.738622578938676 0.31995127722034494 1 YPD[NG]EQ{I|L}[R{M(Oxidation (M))|F}] 10 2 + 68.416 0 0 5.5283 5.5283 86.392 0 0 0 61.42667503568731 7.269987279362624 7.269987279362624 9.164539485499255 0 0 2 0 0 YPD[NG]EQ{I|L}[R{M(Oxidation (M))|F}];YPD[NG]E[AG]{I|L}[R{M(Oxidation (M))|F}] 5.5283;4.7877 -;+ + 66 + NaN NaN 93786.1 NaN 8236 2650 10883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10890 51.897 NaN 3684000 35 0 332480 0.327 + 9966 IEHGIITNW 9 124 541.785089033384 1081.555625133568 2 541.7852172851562 MULTI HCD FTMS 0 0 0 10889 2535415.75 0.9744646607900902 1 -0.02960968017578125 1 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 68.08070601005525 0.009709267492204555 1 {I|L}VTNSV 6 7 60.226 0 0 5.5685 0 0 450.22327653624853 0 450.22327653624853 0 29.591379162015553 0 0 0 1.4247425010840047 0 0.8494850021680094 0.6549471895720984 {I|L}VTNSV 5.5685 - 2625 NaN NaN 658438.3 NaN 8237 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10891 51.902 NaN 1286900 35 0 107030 0.261 + 8392 GYNTFDRLI 9 102 549.782591221783 1097.550629510366 2 549.7825317382812 MULTI HCD FTMS 0 0 0 10889 553894.125 0.8983914057464653 1 -0.02960968017578125 2 Unmodified _GYNTFDRLI_ REV__ENSG00000141994|ENST00000309061|DUS3L;REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF;REV__nc|ENSG00000141994|Q96G46-3|DUS3L 49.93300154707207 0.03166451819912738 1 CRG{I|L}VTN{[DS]|[MA]|[CV]|TT} 9 -1 65.512 0 0 5.9689 0 0 134.10636377089446 0 134.10636377089446 0 43.843115646969935 0 0 0 2.3979400086720375 0 1.4119543704721593 1.5044321917401078 CRG{I|L}VTN{[DS]|[MA]|[CV]|TT} 5.9689 - 1937 + NaN NaN 280760 NaN 8238 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10892 51.905 NaN 1131700 35 0 225900 0.261 + 30014 VFPEKGYSF 9 70 537.2690392578539 1072.5235255825078 2 537.2694091796875 MULTI HCD FTMS 0 0 0 10889 378222.4375 0.512473482095275 -9 0.2531547546386719 3 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 24.990960013464015 0.14443998892849796 1 V{M(Oxidation (M))|F}AST[PA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 10 6 + 34.644 0 0 3.2302 3.2302 81.775 0 0 0 8.195538464012554 9.722667350521235 8.195538464012554 5.709478339592874 0 1.5682503180159344 0 0 0 V{M(Oxidation (M))|F}AST[PA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F} 3.2302;2.6978 -;- 235 + NaN NaN 259986.4 NaN 8239 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10893 51.909 NaN 462090 35 0 98599 0.261 + 22238 QNNEKNISCV 10 65 574.771658418407 1147.528763903614 2 574.7720336914062 MULTI HCD FTMS 0 0 0 10889 237881.09375 0.24971782805117548 12 -0.3386116027832031 4 Unmodified _QNNEKNISCV_ ENSG00000134389|ENST00000256785|CFHR5 22.736283301280096 0.29844449404982915 1 {M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 8 7 75.482 0 0 6.5778 0 0 319.16401869941564 0 319.16401869941564 0 47.76715677224047 0 0 0 3.1861818737241734 0 0.8494850021680094 0 {M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 6.5778 - 794 NaN NaN 153413.6 NaN 8240 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10894 51.912 NaN 214130 35 0 52952 0.261 + -1 LPELMGPSRC 10 61 588.2791554525729 NaN 0 588.2919311523438 PEAK HCD FTMS 0 0 0 10889 7144.84228515625 0.579256054153808 -1 0.01964569091796875 5 Carbamidomethyl (C),Oxidation (M) _LPELM(Oxidation (M))GPSRC(Carbamidomethyl (C))_ REV__ENSG00000167978|ENST00000301740|SRRM2 5.731851221503515 0.33527861879838866 1 PEW 3 -1 20.005 0 0 1.7032 0 0 113.05903992803412 646.2883905365568 759.347430464591 0 0 0 0 0 0 0 0.3807196863200844 0 PEW 1.7032 - 74 + NaN NaN 117893.2 NaN 8241 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10895 51.915 NaN 421080 35 0 52915 0.261 + 24381 RYIPTAAAF 9 67 505.276884993559 1008.539217053918 2 505.2769775390625 MULTI HCD FTMS 0 0 0 10889 114196.0234375 0.015866342312902806 43 -1.2024307250976562 6 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 1 AA{M(Oxidation (M))|F} 3 6 33.812 0 0 3.3526 0 0 701.3842030255875 0 701.3842030255875 0 17.614393726401683 0 0 0 1 0 0 0 + AA{M(Oxidation (M))|F} 3.3526 + + 97 NaN NaN 153204.8 NaN 8242 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10896 51.919 NaN 349210 35 0 54711 0.261 + 24987 RYVFQSENTF 10 55 645.8094151292885 1289.6042773253769 2 645.8091430664062 MULTI HCD FTMS 0 0 0 10889 89150.2421875 0.4902518290736005 -3 0.07547760009765625 7 Unmodified _RYVFQSENTF_ ENSG00000107882|ENST00000369902|SUFU;nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU 111.30893174071366 4.9566027960446945E-05 1 {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 7 3 75.542 0 0 5.8578 0 0 418.23218911490113 0 418.23218911490113 0 57.137961762649 0 0 0 3.305462187404089 0 1.9876954943324545 1.045114016114533 + {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 5.8578 + + 343 + NaN NaN 132840.6 NaN 8243 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10897 51.922 NaN 77988 35 0 5440.1 0.261 -1 TPMFREYSL 9 49 580.2760053548367 1158.5374577764733 2 580.2763061523438 MULTI HCD FTMS 0 0 0 10889 34704.8515625 0.30294991843196234 6 -0.16421127319335938 8 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 10.150570793230772 0.27265765907388223 1 TP{M(Oxidation (M))|F} 3 -1 18.416 0 0 1.5896 0 0 0 810.3812349908811 810.3812349908811 4.463950151760658 0 0 0 0 0 0 0 0 TP{M(Oxidation (M))|F} 1.5896 + + 8 + NaN NaN 100236.4 NaN 8244 2651 10889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10899 51.927 NaN 2461400 35 0 615200 0.327 -1 TSRPQPSSSAM 11 107 582.7694480443604 1163.5243431555207 2 582.7696533203125 MULTI HCD FTMS 0 0 0 10898 1293583.125 0.8508065782491973 -2 0.04925537109375 1 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 19.361941925380144 0.2883811769592959 1 {M(Oxidation (M))|F}STSVSA{M(Oxidation (M))|F} 8 -1 92.53 0 0 7.9526 0 0 319.16426284004064 0 319.16426284004064 0 73.40743145471194 0 0 0 3.079689690656103 0 1.4361818737241734 0 {M(Oxidation (M))|F}STSVSA{M(Oxidation (M))|F} 7.9526 - 7025 NaN NaN 457920.7 NaN 8245 2652 10898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10900 51.931 NaN 914810 35 0 92755 0.261 + 35109 YVDPVNKVL 9 81 523.7975994943004 1045.5806460554006 2 523.7976684570312 MULTI HCD FTMS 0 0 0 10898 558939.5 0.4126124702918239 5 -0.13460159301757812 2 Unmodified _YVDPVNKVL_ ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 85.64151623876279 0.004640175941193596 1 [YV]DVPNKV{I|L} 9 2 + 84.597 0 0 8.0909 8.0909 89.977 0 0 0 25.642492736872597 56.872512404739965 25.642492736872597 7.429928190999391 0 1.9916440611282624 2 0.28872548999643577 0.6421590589602533 [YV]DVPNKV{I|L};[YV]DVPNVK{I|L};[YV]DVPGGKV{I|L};[YV]DVPVNK{I|L};[YV]DVPNK{I|L}V;[YV]DVPGGVK{I|L};[YV]DVPVGGK{I|L};[YV]DVPGGK{I|L}V;[YV]DVPV[K{I|L}]N;[YV]DVPV[KQ]V 8.0909;7.3803;7.2102;7.0919;6.7064;6.4996;6.2112;5.8257;5.0102;4.6583 -;-;-;-;-;-;-;-;-;- 1014 NaN NaN 223678.5 NaN 8246 2652 10898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10901 51.935 NaN 645540 35 0 113020 0.261 + 7561 FYDDKVSAL 9 78 529.2619110034669 1056.5092690737338 2 529.7509765625 MULTI HCD FTMS 0 0 0 10898 27576.115234375 0.18732256792211655 10 -0.2793846130371094 3 Unmodified _FYDDKVSAL_ ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 14.838274106304384 0.23215694253501695 1 YD[PA]NGK{M(Oxidation (M))|F} 8 7 34.66 0 0 3.2806 0 0 146.10394788408377 0 146.10394788408377 0 14.376779781434283 0 0 0 0.2302046884880938 0 0.8252574989159953 0.3494850021680094 YD[PA]NGK{M(Oxidation (M))|F} 3.2806 - 1206 + NaN NaN 186032.8 NaN 8247 2652 10898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10902 51.938 NaN 316860 35 0 32644 0.261 + -1 QMNQLFQTK 9 67 577.2858055246371 1152.5570581160741 2 577.2857055664062 MULTI HCD FTMS 0 0 0 10898 78445.0234375 0.651164915693904 2 -0.049137115478515625 4 Oxidation (M) _QM(Oxidation (M))NQLFQTK_ REV__ENSG00000162062|ENST00000361837|TEDC2;REV__ENST00000565716.1_1_16:2511058-2514276:+|nuORF;REV__nc|ENSG00000162062|Q7L2K0-2|TEDC2;REV__nc|ENSG00000162062|Q7L2K0-3|TEDC2 13.90604991867851 0.24021115267848145 1 GA{M(Oxidation (M))|F}NT 5 -1 44.24 0 0 3.8384 0 0 0 659.3535250299436 659.3535250299436 33.29812217439503 0 0 0 0 0 0 0.6989700043360187 0.3807196863200844 GA{M(Oxidation (M))|F}NT 3.8384 - 83 + NaN NaN 135427.9 NaN 8248 2652 10898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10903 51.942 NaN 207050 35 0 37177 0.262 + 16058 LPSLSAHEL 9 53 483.7665864696814 965.5186200061628 2 483.76654052734375 MULTI HCD FTMS 0 0 0 10898 47794.53125 0.4434295850316113 -2 0.04925537109375 5 Unmodified _LPSLSAHEL_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8 49.93300154707207 0.03166451819912738 1 {I|L}P{I|L}SEEG 7 4 63.839 0 0 6.6119 0 0 0 237.12290369205314 237.12290369205314 50.34399824859552 0 0 0 0 0.8807196863200843 1.5228787452803376 1.2302046884880937 0 {I|L}P{I|L}SEEG 6.6119 - 378 + NaN NaN 117872.2 NaN 8249 2652 10898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10904 51.945 NaN 157770 35 0 29778 0.261 -1 MPQSMPEYAL 10 56 599.7594141413936 1197.504275349587 2 599.7599487304688 MULTI HCD FTMS 0 0 0 10898 51815.171875 0.45348178033291037 -7 0.20045089721679688 6 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 1 YA{I|L} 3 -1 33.5 0 0 2.7975 0 0 832.3072376935562 0 832.3072376935562 0 19.68765315847925 0 0 0 0.8807196863200843 0 0 0 YA{I|L} 2.7975 + + 82 NaN NaN 109964.7 NaN 8250 2652 10898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10906 51.95 NaN 2034900 35 0 193210 0.327 + 25861 SMLVSYRCR 9 110 557.7794636150969 1113.5443742969937 2 557.780029296875 MULTI HCD FTMS 0 0 0 10905 1133682.375 0.7555506922698388 2 -0.055850982666015625 1 Unmodified _SMLVSYRCR_ ENSG00000277399|ENST00000616987|GPR179;GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179 24.020572477871973 0.15282392193088168 1 {I|L}VTN{[MS]|[{M(Oxidation (M))|F}A]} 6 7 48.377 0 0 4.3444 0 0 450.2225819318375 0 450.2225819318375 0 15.827731244245342 0 0 0 1.4247425010840047 0 0.7302046884880937 0.3807196863200844 {I|L}VTN{[MS]|[{M(Oxidation (M))|F}A]} 4.3444 - 793 NaN NaN 398758.2 NaN 8251 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10907 51.954 NaN 1678800 35 0 239690 0.261 + 10604 IPNPQERTLTL 11 117 641.3618472699594 1280.7091416067187 2 641.3619384765625 MULTI HCD FTMS 0 0 0 10905 1126770.875 1 0 0 2 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 168.90229379071172 1.1987299033412238E-08 1 {I|L}PNPQE 6 5 92.687 0 0 7.2372 0 0 0 599.3518923733482 599.3518923733482 42.4900650576861 0 0 0 0 1.805462187404089 1 1.7856668758921828 0.5629529932484498 + {I|L}PNPQE 7.2372 + + 9480 + NaN NaN 341002 NaN 8252 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10908 51.958 NaN 950700 35 0 79851 0.262 + 33393 YGNTLVEFR 9 92 549.782591221783 1097.550629510366 2 549.7825927734375 MULTI HCD FTMS 0 0 0 10905 433133.0625 0.7025223834873616 3 -0.07879638671875 3 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 58.678817012210395 0.019429721296335044 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 56.778 0 0 5.1732 0 0 563.3112018754035 0 563.3112018754035 0 33.18968104595733 0 0 0 2 0 0.9559771852360797 0.8494850021680094 VTN{[DS]|[MA]|[CV]|TT} 5.1732 - 694 + NaN NaN 233333.2 NaN 8253 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10909 51.961 NaN 481220 35 0 58966 0.261 + 26597 SVVGFLSQR 9 66 496.7804698603041 NaN 0 496.763671875 PEAK HCD FTMS 0 0 0 10905 15846.8203125 0.6931926666360235 1 -0.026256561279296875 4 Unmodified _SVVGFLSQR_ ENSG00000139990|ENST00000341516|DCAF5;ENST00000553943.1_1_14:69616197-69619695:-|nuORF;nc|ENSG00000139990|Q96JK2-3|DCAF5 15.248480904072842 0.21929144555811228 1 PVVGT 5 6 30.037 0 0 3.0293 0 0 165.1112804415082 370.1508405654529 535.262121006961 0 0 0 0 0 0 0 1.1989700043360187 0 PVVGT 3.0293 - 855 + NaN NaN 167853.2 NaN 8254 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10910 51.964 NaN 132300 35 0 27541 0.261 + -1 LHYRAVSYMF 10 38 434.88214623931003 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 10905 60788.109375 0.5687200943998063 186 -4.868206024169922 5 Oxidation (M) _LHYRAVSYM(Oxidation (M))F_ REV__ENST00000430321.5_1_2:170821003-170871346:+|nuORF 3.3196427980023873 0.3373431348853355 1 R 1 -1 0.48455 0 0 0.05584 0 0 298.4465912073326 410.18427454166255 708.6308657489951 0 0 0 0 0 0 0 0 0 R 0.05584 + + 1 + NaN NaN 117365 NaN 8255 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10911 51.968 NaN 130940 35 0 10759 0.261 -1 DMFGCCLPVC 10 50 406.48580608629464 1216.435588859084 3 406.4859619140625 MULTI HCD FTMS 0 0 0 10905 18515.18359375 0.3787970111084472 1 -0.026256561279296875 6 2 Carbamidomethyl (C),Oxidation (M) _DM(Oxidation (M))FGC(Carbamidomethyl (C))CLPVC(Carbamidomethyl (C))_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482834.1_1_3:155761946-155762456:-|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 0.776531954647913 0.4711933975711956 1 A{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.2289 0 0 980.3196506040043 0 980.3196506040043 0 11.84955642535897 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.2289 - 4 + NaN NaN 98884.4 NaN 8256 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10912 51.971 NaN 81629 35 0 6229.1 0.261 + -1 EYCDYFPVI 9 35 603.262735872553 1204.5109188119059 2 603.2631225585938 MULTI HCD FTMS 0 0 0 10905 42687.9609375 0.9288173871921477 2 -0.055850982666015625 7 Carbamidomethyl (C) _EYC(Carbamidomethyl (C))DYFPVI_ REV__ENSG00000137944|ENST00000260508|KYAT3;REV__nc|ENSG00000137944|Q6YP21-3|KYAT3 4.3292370932331545 0.3181982124262546 1 E 1 -1 8.9794 0 0 0.74548 0 0 654.3587714503809 418.0863436334594 1072.4451150838404 0 0 0 0 0 0.5 0 0 0 E 0.74548 + + 3 + NaN NaN 98993.6 NaN 8257 2653 10905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10914 51.976 NaN 672930 35 0 41417 0.327 + 23022 RCCSGLLFGR 10 108 556.2795895508209 NaN 0 556.2984619140625 PEAK HCD FTMS 0 0 0 10913 57611.4609375 1 0 0 1 Unmodified _RCCSGLLFGR_ REV__ENSG00000152620|ENST00000381937|NADK2;REV__nc|ENSG00000152620|Q4G0N4-2|NADK2 21.536976647645854 0.26818477760186155 1 QCSR{M(Oxidation (M))|F}V 6 -1 29.892 0 0 2.6917 0 0 131.05658319431444 256.1301668756469 387.18675006996136 0 0 0 0 0 0.5 0 0.8494850021680094 1.1694451763165201 QCSR{M(Oxidation (M))|F}V 2.6917 - 777 + NaN NaN 191393.6 NaN 8258 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10915 51.98 NaN 1006800 35 0 68556 0.261 + 6660 FPNAIEHTL 9 92 521.2716177525932 1040.5286825719863 2 521.27197265625 MULTI HCD FTMS 0 0 0 10913 447665.40625 0.2740016311609895 -10 0.27259063720703125 2 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 157.7952019732125 5.857147217999733E-07 1 {I|L}MNA{I|L}EH 7 4 90.914 0 0 8.7373 0 0 0 229.1195009820922 229.1195009820922 37.53669175573954 0 0 0 0 2.329689690656103 2 2.3494850021680094 0 {I|L}MNA{I|L}EH 8.7373 - 1780 + NaN NaN 230140.7 NaN 8259 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10916 51.984 NaN 144480 35 0 9822.1 0.261 -1 YPDRIMNTF 9 55 586.7737018509798 1171.5328507687595 2 586.7735595703125 MULTI HCD FTMS 0 0 0 10913 65292.14453125 0.016306581772642544 131 -3.351604461669922 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 21.590151480376914 0.17382222009858564 1 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4 -1 30.918 0 0 2.6391 0 0 644.3286043068892 0 644.3286043068892 0 15.499262912591048 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 2.6391 + + 72 NaN NaN 108124.3 NaN 8260 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10917 51.987 NaN 158030 35 0 16083 0.261 + 31878 VYNENLVHMI 10 57 624.3080337249818 1246.6015145167635 2 624.3079833984375 MULTI HCD FTMS 0 0 0 10913 47512.59765625 0.19055494438868917 16 -0.4640617370605469 4 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 61.60191391372663 0.03559593591905874 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 10 0 + 62.681 0 0 5.0282 5.0282 83.145 0 0 0 42.44772724483049 4.884381005764311 4.884381005764311 3.584167719858833 0 2.079689690656103 2 0 0 + + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]{[VA]|[{I|L}G]}V[NS]VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]N[DG][{I|L}A]VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]NE[{I|L}A]AAH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[CT]|[{M(Oxidation (M))|F}G]}[TA]E{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5.0282;4.7406;4.293;3.5695;3.1854;2.3479 +;-;-;-;-;- + 162 + NaN NaN 110678.4 NaN 8261 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10918 51.991 NaN 138070 35 0 17835 0.261 -1 YPESESIMM 9 48 551.7252500357886 1101.435947138377 2 551.7257080078125 MULTI HCD FTMS 0 0 0 10913 67847.9765625 0.7041369196674742 4 -0.11505508422851562 5 Oxidation (M) _YPESESIMM(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 36.04419817259434 0.08350412372117409 1 S{I|L}M{M(Oxidation (M))|F} 4 -1 43.928 0 0 3.9882 0 0 605.2335373256802 0 605.2335373256802 0 36.938200260161125 0 0 0 1.5 0 0 0 S{I|L}M{M(Oxidation (M))|F} 3.9882 + + 28 + NaN NaN 103677.1 NaN 8262 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10919 51.994 NaN 119200 35 0 13047 0.261 -1 LPAAGVGDMV 10 44 473.2391347253083 944.4637165174166 2 473.23883056640625 MULTI HCD FTMS 0 0 0 10913 35355.5546875 0.607017103341007 1 -0.02959442138671875 6 Oxidation (M) _LPAAGVGDM(Oxidation (M))V_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 30.636539890814138 0.2266618088935899 1 {[QN]|[E{I|L}]|[KN]}VN[QP]{M(Oxidation (M))|F}V 8 -1 + 35.648 0 0 3.7745 3.7745 85.252 0 0 0 8.737125054200234 14.679250024847263 8.737125054200234 9.262137858390812 0 0 0 0.3252574989159953 0 {[QN]|[E{I|L}]|[KN]}VN[QP]{M(Oxidation (M))|F}V;{[QN]|[E{I|L}]|[KN]}VGG[QP]{M(Oxidation (M))|F}V 3.7745;2.7938 -;- 48 NaN NaN 104024.2 NaN 8263 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10920 51.997 NaN 172970 35 0 27297 0.261 + -1 YMTMRRSSM 9 57 589.7597531402001 1177.5049533472002 2 589.759765625 MULTI HCD FTMS 0 0 0 10913 75418.703125 1 0 0 7 Oxidation (M) _YM(Oxidation (M))TMRRSSM_ REV__ENST00000464761.1_1_2:204281657-204301507:+|nuORF 9.38312468134398 0.279288223203164 1 [YT]{[SA]|[TG]}[{M(Oxidation (M))|F}V]SVS{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 + 51.527 0 0 4.3759 4.3759 82.479 0 0 0 10.016672894590961 43.5681071455549 10.016672894590961 4.515449934959719 0 1.1989700043360187 2 0.3807196863200844 0 [YT]{[SA]|[TG]}[{M(Oxidation (M))|F}V]SVS{[MS]|[{M(Oxidation (M))|F}A]};[YT]{[SA]|[TG]}S[{M(Oxidation (M))|F}V]VS{[MS]|[{M(Oxidation (M))|F}A]};[YT]{[SA]|[TG]}[{M(Oxidation (M))|F}V]SVC{[DS]|[MA]|[CV]|TT};[YT]{[SA]|[TG]}S[{M(Oxidation (M))|F}V]VC{[DS]|[MA]|[CV]|TT};[NP][NP]S[{M(Oxidation (M))|F}V]VS{[MS]|[{M(Oxidation (M))|F}A]};[NP][NP][{M(Oxidation (M))|F}V]SVS{[MS]|[{M(Oxidation (M))|F}A]} 4.3759;3.9925;3.61;3.2266;2.1624;1.7789 -;-;-;-;-;- 187 NaN NaN 123055.7 NaN 8264 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10921 52.001 NaN 189990 35 0 19855 0.261 + 32727 WPVGGDSRF 9 64 510.7487865659366 1019.4830201986732 2 510.7493591308594 MULTI HCD FTMS 0 0 0 10913 62655.1640625 0.612943481275131 -6 0.15422439575195312 8 Unmodified _WPVGGDSRF_ ENSG00000141738|ENST00000309156|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 31.26834338654808 0.10542797264966089 1 WPVG[DG]A[YR] 9 2 + 59.432 0 0 5.8297 5.8297 83.572 0 0 0 45.45303095022554 4.762036441594191 4.762036441594191 1.706962271689747 0 1.1861818737241734 1.5228787452803376 0 0 WPVG[DG]A[YR];WPV[DN]A[YR] 5.8297;5.6622 -;- 88 + NaN NaN 109201.9 NaN 8265 2654 10913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10923 52.006 NaN 587110 35 0 69957 0.327 + 10535 IPHMDIEAL 9 76 527.7666675310228 1053.5187821288455 2 527.7654418945312 MULTI HCD FTMS 0 0 0 10922 310673.125 0.6229750572230507 -3 0.07873153686523438 1 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 46.020951573049366 0.037705236580089195 1 E{[YD]|[{M(Oxidation (M))|F}M]}PC{I|L}{I|L} 7 7 52.624 0 0 4.9951 0 0 202.1317616193375 0 202.1317616193375 0 35.255310316373354 0 0 0 1.305462187404089 0 1.2614393726401687 0 E{[YD]|[{M(Oxidation (M))|F}M]}PC{I|L}{I|L} 4.9951 - 288 NaN NaN 171055.5 NaN 8266 2655 10922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10924 52.01 NaN 810470 35 0 125990 0.261 -1 VMAPRTVLL 9 83 508.30222238571173 1014.5898918382235 2 508.30242919921875 MULTI HCD FTMS 0 0 0 10922 418910.65625 0.9506223372837818 -4 0.10834121704101562 2 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 31.26834338654808 0.10542797264966089 1 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L} 9 -1 + 53.663 0 0 5.2891 5.2891 85.836 0 0 0 7.147642715192504 36.67280924645823 7.147642715192504 9.075221787320515 0 1.3494850021680094 0 0.3054621874040891 0 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L};[{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}V;[{I|L}T]C[RP]T{I|L}V{I|L};[{I|L}T]C[RP]T{I|L}{I|L}V;[{M(Oxidation (M))|F}V]A[RP]V[{I|L}T]{I|L};[{M(Oxidation (M))|F}V]AKK[NP]V{I|L};[{I|L}T]V[RP]A{M(Oxidation (M))|F}V{I|L};[{I|L}V]T[RP]A{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}V]AKK[NP]{I|L}V;[{I|L}T]CKK[NP]V{I|L} 5.2891;4.3946;4.2505;3.356;3.1959;3.0739;2.7206;2.5314;2.4805;2.3364 -;-;-;-;-;-;-;-;-;- 266 NaN NaN 224668.1 NaN 8267 2655 10922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10925 52.014 NaN 118230 35 0 17976 0.261 + 19543 NSLGVVPYL 9 28 481.2714437896963 960.5283346461927 2 481.2716064453125 MULTI HCD FTMS 0 0 0 10922 77735.296875 0.5241903883272245 3 -0.08546066284179688 3 Unmodified _NSLGVVPYL_ ENSG00000054598|ENST00000645831|FOXC1 13.90604991867851 0.24021115267848145 1 Y{I|L} 2 7 25.969 0 0 2.7036 0 0 666.3707289455682 0 666.3707289455682 0 18.979400086720375 0 0 0 0.5 0 0 0 + Y{I|L} 2.7036 + + 13 NaN NaN 103627.8 NaN 8268 2655 10922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10926 52.017 NaN 191910 35 0 19248 0.261 + 8365 GYLADPAKF 9 49 491.2555605663153 980.4965681994306 2 491.255859375 MULTI HCD FTMS 0 0 0 10922 92265.328125 0.4757154727338026 2 -0.05587005615234375 4 Unmodified _GYLADPAKF_ ENSG00000137547|ENST00000260102|MRPL15 51.629811660486645 0.02929079705179888 1 [YG]{I|L}AD[PA]K{M(Oxidation (M))|F} 9 0 + 83.918 0 0 8.5588 8.5588 90.113 0 0 0 1.3206844429176101 1.3206844429176101 1.3206844429176101 5.796896906561031 0 2.805462187404089 2 0 0 + + [YG]{I|L}AD[PA]K{M(Oxidation (M))|F};[YG]{I|L}KDA[PA]{M(Oxidation (M))|F};[YG]{I|L}ADK[PA]{M(Oxidation (M))|F};[YG]{I|L}A[TA]A[PA]{M(Oxidation (M))|F};[YG]{I|L}KW{I|L}{[DS]|[MA]|[CV]|TT};[RH][WP]A[PA]{M(Oxidation (M))|F};[YG][KS]{[RE]|[WV]}{[QN]|[E{I|L}]|[KN]};[RH][PA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QN]|[E{I|L}]|[KN]} 8.5588;7.9675;7.9675;6.0085;5.8537;3.3098;1.5464;0.2787 +;-;-;-;-;-;-;- + 255 NaN NaN 125677 NaN 8269 2655 10922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10927 52.02 NaN 161500 35 0 14547 0.261 + 21287 PRTAVHTGN 9 64 476.7521522106268 951.4897514880536 2 476.75164794921875 MULTI HCD FTMS 0 0 0 10922 32103.275390625 0.31033577082567415 5 -0.14471817016601562 5 Unmodified _PRTAVHTGN_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 10.073929032068715 0.27331982688540024 1 T[NG] 3 -1 16.483 0 0 1.7324 0 0 661.3675723882474 0 661.3675723882474 0 0.9322042751192541 0 0 0 0.3494850021680094 0 0 0.8807196863200843 T[NG] 1.7324 + + 44 + NaN NaN 107138.5 NaN 8270 2655 10922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10928 52.024 NaN 182790 35 0 14774 0.261 + 29447 TYTSNLVRL 9 77 533.7998491058837 1065.5851452785673 2 533.7987670898438 MULTI HCD FTMS 0 0 0 10922 50657.3984375 0.8103304796200381 -3 0.07873153686523438 6 Unmodified _TYTSNLVRL_ ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 51.629811660486645 0.02929079705179888 1 [YT]T[NS]{I|L}VR{I|L} 9 0 + 48.763 0 0 4.5762 4.5762 86.702 0 0 0 21.328402799419166 9.933787369250169 9.933787369250169 10.654302752891809 0 1.079689690656103 2 0.2614393726401688 0 + + [YT]T[NS]{I|L}VR{I|L};[YV]C[WK]VR{I|L};[YT]T[K{I|L}][DG]R{I|L} 4.5762;3.5764;3.4559 +;-;- + 90 + NaN NaN 114858.5 NaN 8271 2655 10922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10930 52.029 NaN 1455200 35 0 134890 0.327 + 9967 IEHGIITNW 9 104 541.785089033384 1081.555625133568 2 541.78515625 MULTI HCD FTMS 0 0 0 10929 808561.75 0.31076357060635584 6 -0.17770767211914062 1 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 46.020951573049366 0.037705236580089195 1 RVTNW 5 6 58.954 0 0 5.4508 0 0 407.2180348126969 0 407.2180348126969 0 26.422275366732954 0 0 0 1.4247425010840047 0 0.8494850021680094 0.3252574989159953 RVTNW 5.4508 - 808 NaN NaN 305082.7 NaN 8272 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10931 52.033 NaN 437980 35 0 42755 0.261 + 9437 HPVKIGDLF 9 88 513.2927409188765 1024.5709289045528 2 513.2929077148438 MULTI HCD FTMS 0 0 0 10929 133648.9375 0.21681816209253496 7 -0.20732498168945312 2 Unmodified _HPVKIGDLF_ ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;nc|ENSG00000135250|P78362|SRPK2;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant 45.69961567697781 0.039180348357221985 1 HPV 3 6 28.188 0 0 2.7512 0 0 0 688.3632154065467 688.3632154065467 4.23393743112328 0 0 0 0 0.5 0 0 0 + HPV 2.7512 + + 360 + NaN NaN 159185.1 NaN 8273 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10932 52.037 NaN 196450 35 0 30041 0.261 -1 RFDEAYIYM 9 53 612.2739516928943 1222.5333504525886 2 612.2740478515625 MULTI HCD FTMS 0 0 0 10929 74052.140625 0.5839522624939371 3 -0.0921630859375 3 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 12.240655878213236 0.2545997876781172 1 Y{I|L}Y{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.4304 0 0 618.2758045880875 0 618.2758045880875 0 30.969100130080562 0 0 0 1 0 0 0 Y{I|L}Y{M(Oxidation (M))|F} 3.4304 + + 32 NaN NaN 133969.1 NaN 8274 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10933 52.04 NaN 214530 35 0 66570 0.262 + -1 MHRWNWNEFF 10 41 494.88455102063176 1481.6318236620953 3 494.88470458984375 MULTI HCD FTMS 0 0 0 10929 49748.421875 0.44095905543130876 3 -0.0921630859375 4 Oxidation (M) _M(Oxidation (M))HRWNWNEFF_ REV__ENST00000427574.6_1_11:76156149-76164398:+|nuORF 1.7422754331352037 0.46608156381052757 1 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.7527 0 0 1217.477992263088 0 1217.477992263088 0 15.255762612236907 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.7527 - 23 NaN NaN 128347.7 NaN 8275 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10934 52.043 NaN 123170 35 0 19974 0.261 + 34173 YPDGNEGAIRF 11 56 619.7938817722211 1237.573210611242 2 619.7938232421875 MULTI HCD FTMS 0 0 0 10929 62025.3046875 0.8613412520675799 -3 0.07879638671875 5 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 28.233623360808718 0.2127292296419295 1 YPDG{[QD]|[EN]|[WG]|[KD]|[RS]}Q{I|L}[R{M(Oxidation (M))|F}] 10 2 + 79.308 0 0 6.4083 6.4083 87.844 0 0 0 79.30774338783202 7.269987279362624 7.269987279362624 9.164539485499247 0 1.089136830878453 2 0 0 YPDG{[QD]|[EN]|[WG]|[KD]|[RS]}Q{I|L}[R{M(Oxidation (M))|F}];YPDG{[QD]|[EN]|[WG]|[KD]|[RS]}[AG]{I|L}[R{M(Oxidation (M))|F}] 6.4083;5.6678 -;+ + 95 + NaN NaN 101874.4 NaN 8276 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10935 52.047 NaN 143810 35 0 12075 0.261 + 11783 KEEDEQLQN 9 55 566.7584639938195 1131.502375054439 2 568.261962890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KEEDEQLQN_ ENSG00000153179|ENST00000542104|RASSF3 8.155526934196011 0.2891920862272901 1 KEK 3 7 22.703 0 0 2.0065 0 0 0 743.2565401666624 743.2565401666624 14.744237387763093 0 0 0 0 0 0 0 0 KEK 2.0065 - 41 + NaN NaN 109574.2 NaN 8277 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10936 52.05 NaN 198890 35 0 30655 0.261 -1 HAVIQEYML 9 67 560.2786811148007 1118.5428092964014 2 560.2793579101562 MULTI HCD FTMS 0 0 0 10929 52335.99609375 0.09172630353077547 28 -0.7954635620117188 7 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 31.26834338654808 0.10542797264966089 1 {I|L}QEY{M(Oxidation (M))|F}{I|L} 6 -1 45.208 0 0 4.0417 0 0 307.1639576642594 0 307.1639576642594 0 30.259621790487685 0 0 0 1.829689690656103 0 0 0 {I|L}QEY{M(Oxidation (M))|F}{I|L} 4.0417 + + 185 NaN NaN 122037.8 NaN 8278 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10937 52.053 NaN 161570 35 0 39998 0.263 + -1 YDWAFCSMIL 10 52 455.19447235924906 1362.5615876779473 3 455.19488525390625 MULTI HCD FTMS 0 0 0 10929 56020.01171875 0.6890121166312964 4 -0.12177276611328125 8 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))YDWAFC(Carbamidomethyl (C))SM(Oxidation (M))IL_ REV__ENST00000512866.5_1_6:83900595-83900655:-|nuORF 0.6268255596534771 0.47198581731947004 1 {I|L}{I|L} 2 -1 20.969 0 0 1.5389 0 0 1118.383072791564 0 1118.383072791564 0 13.979400086720375 0 0 0 0 0 0 0 {I|L}{I|L} 1.5389 + + 4 NaN NaN 108620.5 NaN 8279 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10938 52.057 NaN 205310 35 0 41968 0.261 + 15431 LPDKVAPTV 9 63 470.2789483921825 938.543343851165 2 470.2789306640625 MULTI HCD FTMS 0 0 0 10929 40791.1640625 1 0 0 9 Unmodified _LPDKVAPTV_ REV__ENSG00000138785|ENST00000340139|INTS12;REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant 18.373094154950223 0.20161688160436167 1 V{M(Oxidation (M))|F}{I|L}K 4 -1 35.918 0 0 3.827 0 0 0 448.1847017877563 448.1847017877563 8.343794390172754 0 0 0 0 0 1.3010299956639813 0 0 V{M(Oxidation (M))|F}{I|L}K 3.827 - 70 + NaN NaN 115516.2 NaN 8280 2656 10929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10940 52.062 NaN 1599600 35 0 368320 0.327 + 30015 VFPEKGYSF 9 88 537.2690392578539 1072.5235255825078 2 537.2689208984375 MULTI HCD FTMS 0 0 0 10939 629163.3125 0.852486477784578 -3 0.0854644775390625 1 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 28.494509381512117 0.11816142465008336 1 V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F} 9 4 + 25.134 0 0 2.3434 2.3434 80.485 0 0 0 -0.557940561588083 0.49226842154185135 -0.557940561588083 3.658098707110227 0 1.2614393726401687 0 0 0 V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F};[YV]QQ{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};V{M(Oxidation (M))|F}P[YQ][SG]Y{I|L};[{M(Oxidation (M))|F}V]E[SG]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 2.3434;2.0023;1.2172;1.1987 -;-;-;- 152 + NaN NaN 329141.6 NaN 8281 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10941 52.066 NaN 467640 35 0 111920 0.261 + 33426 YGSRLDYFQ 9 69 574.771658418407 1147.528763903614 2 574.7722778320312 MULTI HCD FTMS 0 0 0 10939 184161.609375 0.19332531383038506 18 -0.5130386352539062 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 20.453626601364224 0.18364154288633264 1 {M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 8 8 77.696 0 0 6.7707 0 0 319.16380507636876 0 319.16380507636876 0 47.76207232615569 0 0 0 3.1989700043360187 0 0.805462187404089 0 {M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 6.7707 - 525 NaN NaN 151853.4 NaN 8282 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10942 52.07 NaN 256400 35 0 30267 0.261 + 24988 RYVFQSENTF 10 40 645.8094151292885 1289.6042773253769 2 646.3113403320312 MULTI HCD FTMS 0 0 0 10939 59732.7109375 0.45162167768836975 3 -0.08884811401367188 3 Unmodified _RYVFQSENTF_ ENSG00000107882|ENST00000369902|SUFU;nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU 40.72490554402381 0.1391161235525472 1 {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 7 3 65.961 0 0 5.1149 0 0 418.23277150018504 0 418.23277150018504 0 65.96146996841902 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 5.1149 + + 66 NaN NaN 133299.9 NaN 8283 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10943 52.073 NaN 181150 35 0 18415 0.261 + 30955 VRNHTRNCE 9 57 564.770277906219 1127.526002879238 2 564.7687377929688 MULTI HCD FTMS 0 0 0 10939 63296.84375 0.22995830889563873 7 -0.19732666015625 4 Unmodified _VRNHTRNCE_ REV__ENSG00000164761|ENST00000297350|TNFRSF11B 24.020572477871973 0.15282392193088168 1 TN[EC] 4 -1 42.065 0 0 3.7307 0 0 662.3759661441372 0 662.3759661441372 0 27.372118693881546 0 0 0 1.5 0 0.7614393726401688 0.3252574989159953 TN[EC] 3.7307 - 155 NaN NaN 115415.4 NaN 8284 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10944 52.076 NaN 203750 35 0 34174 0.261 + 1117 AYKSEVVYF 9 55 553.2818095864291 1104.549066239658 2 553.2820434570312 MULTI HCD FTMS 0 0 0 10939 75498.28125 0.7283887694728212 -1 0.032924652099609375 5 Unmodified _AYKSEVVYF_ ENSG00000106714|ENST00000297668|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000283378|ENST00000636699|CNTNAP3C;ENST00000377653.2_1_9:39174468-39266986:-|nuORF;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 43.77239144664712 0.04802738721622131 1 VVY{M(Oxidation (M))|F} 4 5 48.175 0 0 4.3615 0 0 578.2689076154312 0 578.2689076154312 0 36.48062535455438 0 0 0 1.774227503252014 0 0 0 + VVY{M(Oxidation (M))|F} 4.3615 + + 54 NaN NaN 110040.1 NaN 8285 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10945 52.08 NaN 126170 35 0 28381 0.261 -1 LPEWKENIM 9 46 588.2917915267129 1174.5690301202258 2 588.2919311523438 MULTI HCD FTMS 0 0 0 10939 81089.421875 0.6632776354871197 9 -0.26020050048828125 6 Oxidation (M) _LPEWKENIM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 22.65808497894818 0.16459551161911185 1 {I|L}PEW 4 -1 40.191 0 0 3.4217 0 0 0 646.2879122369749 646.2879122369749 16.60728139283883 0 0 0 0 0.5 0 0.3252574989159953 0 {I|L}PEW 3.4217 + + 19 + NaN NaN 106543.3 NaN 8286 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10946 52.083 NaN 251240 35 0 14545 0.261 + 13700 KYPKVWEGF 9 74 577.3056214668416 1152.596690000483 2 577.8072509765625 MULTI HCD FTMS 0 0 0 10939 27144.236328125 0.19466244565696053 10 -0.2930870056152344 7 Unmodified _KYPKVWEGF_ ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}VR{I|L}C(Carbamidomethyl (C)){{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 7 8 24.97 0 0 2.1665 0 0 165.15382679005796 0 165.15382679005796 0 0.19418213170830256 0 0 0 0 0 0 0.7302046884880937 {M(Oxidation (M))|F}VR{I|L}C(Carbamidomethyl (C)){{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 2.1665 - 699 + NaN NaN 129576 NaN 8287 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10947 52.086 NaN 123480 35 0 8536 0.261 -1 TYMKDLYQL 9 53 595.7919115901797 1189.5692702471592 2 595.7938842773438 MULTI HCD FTMS 0 0 0 10939 17146.060546875 0.13208086166454344 28 -0.7987556457519531 8 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 20.41453444215458 0.18397929046831515 1 YQ{I|L} 3 -1 30.445 0 0 2.5594 0 0 767.34965712715 0 767.34965712715 0 21.15356566548286 0 0 0 0.4247425010840047 0 0 0 YQ{I|L} 2.5594 + + 17 NaN NaN 115531.4 NaN 8288 2657 10939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10949 52.091 NaN 1172100 35 0 298390 0.327 -1 TSRPQPSSSAM 11 85 582.7694480443604 1163.5243431555207 2 582.7695922851562 MULTI HCD FTMS 0 0 0 10948 686628.6875 0.45160468844212265 4 -0.11519241333007812 1 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 19.361941925380144 0.2883811769592959 1 {M(Oxidation (M))|F}STSVSA{M(Oxidation (M))|F} 8 -1 83.977 0 0 7.2175 0 0 319.16438491035314 0 319.16438491035314 0 71.75881917084361 0 0 0 3.1861818737241734 0 0.6505149978319906 0 {M(Oxidation (M))|F}STSVSA{M(Oxidation (M))|F} 7.2175 - 2500 NaN NaN 263711 NaN 8289 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10950 52.096 NaN 604140 35 0 69208 0.261 + 23866 RSNLNRHSM 9 76 557.7794636150969 1113.5443742969937 2 557.7800903320312 MULTI HCD FTMS 0 0 0 10948 305774.40625 0.2037855305994207 7 -0.2010650634765625 2 Unmodified _RSNLNRHSM_ ENSG00000186026|ENST00000421176|ZNF284 11.640296217721598 0.25978676193971967 1 RVTN{[MS]|[{M(Oxidation (M))|F}A]} 6 5 49.002 0 0 4.4005 0 0 407.218065330275 0 407.218065330275 0 33.534583886279954 0 0 0 1.4247425010840047 0 0.7302046884880937 0.3807196863200844 RVTN{[MS]|[{M(Oxidation (M))|F}A]} 4.4005 - 290 NaN NaN 182821.9 NaN 8290 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10951 52.099 NaN 374090 35 0 62731 0.261 + 33309 YFRQMEAL 8 67 529.2619110034669 1056.5092690737338 2 529.7506713867188 MULTI HCD FTMS 0 0 0 10948 28651.24609375 0.19462585454239387 16 -0.4472999572753906 3 Unmodified _YFRQMEAL_ REV__ENSG00000102996|ENST00000219271|MMP15;REV__MMP15|p.R120Qfs*2|1|0.42|ENSG00000102996|chr16:58038313-58038313|G/-|frameshift_variant;REV__MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant 12.531546534597751 0.5015908124873912 1 V{I|L} 2 -1 19.464 0 0 1.8423 0 0 826.3572865216812 0 826.3572865216812 0 1.494981086150343 0 0 0 0 0 0 0 V{I|L} 1.8423 - 524 NaN NaN 157981.2 NaN 8291 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10952 52.102 NaN 356990 35 0 44799 0.261 + 12033 KIASNSATAF 10 63 505.2674284366605 NaN 0 505.2769470214844 PEAK HCD FTMS 0 0 0 10948 7714.650390625 0.7228716843149384 4 -0.11519241333007812 4 Unmodified _KIASNSATAF_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 8.745405648335112 0.33269943387702366 1 A 1 9 16.99 0 0 1.6846 0 0 772.4039994741039 162.05605493717033 934.4600544112742 0 0 0 0 0 1 0 0 0 + A 1.6846 + + 68 + NaN NaN 133757.4 NaN 8292 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10953 52.106 NaN 210300 35 0 60796 0.261 -1 MPQSMPEYAL 10 45 599.7594141413936 1197.504275349587 2 599.7592163085938 MULTI HCD FTMS 0 0 0 10948 96050.078125 0.8406217494427665 -1 0.029590606689453125 5 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 15.248480904072842 0.3684828712757339 1 YA{I|L} 3 -1 34.693 0 0 2.8971 0 0 832.3115101544937 0 832.3115101544937 0 17.211265532945568 0 0 0 1 0 0 0 YA{I|L} 2.8971 + + 66 NaN NaN 113108.7 NaN 8293 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10954 52.109 NaN 117640 35 0 22642 0.263 + 15838 LPISGTHLE 9 42 483.7665864696814 965.5186200061628 2 483.766357421875 MULTI HCD FTMS 0 0 0 10948 63164.15234375 0.5860263325139848 4 -0.11519241333007812 6 Unmodified _LPISGTHLE_ REV__ENSG00000128908|ENST00000648947|INO80 34.10243960390752 0.09241788333544565 1 {I|L}P{I|L}S{M(Oxidation (M))|F} 5 -1 58.66 0 0 6.0755 0 0 0 405.1832674615844 405.1832674615844 42.2062251842808 0 0 0 0 0.4247425010840047 1.0969100130080565 0.8494850021680094 0 {I|L}P{I|L}S{M(Oxidation (M))|F} 6.0755 - 36 + NaN NaN 105070.7 NaN 8294 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10955 52.112 NaN 168560 35 0 15457 0.261 -1 TPMFREYSL 9 55 580.2762161476448 1158.5378793620896 2 580.2766723632812 MULTI HCD FTMS 0 0 0 10948 66519.0234375 0.4419359834919339 -9 0.24964141845703125 7 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 22.774965066868997 0.16358569359229336 1 TP{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VP][HD]S{I|L} 10 -1 + 39.882 0 0 3.4425 3.4425 88.646 0 0 0 -0.6909063137913307 6.0822685886482475 -0.6909063137913307 39.882287586051106 0 1.1989700043360187 0 0.4247425010840047 0 TP{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VP][HD]S{I|L} 3.4425 - 81 + NaN NaN 115781 NaN 8295 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10956 52.116 NaN 298950 35 0 77737 0.262 + 15535 LPDPKAVSL 9 51 470.2789483921825 938.543343851165 2 470.2684326171875 MULTI HCD FTMS 0 0 0 10948 30688.18359375 0.7523242912786144 2 -0.05925750732421875 8 Unmodified _LPDPKAVSL_ ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463283-61463367:-|nuORF;nc|ENSG00000115464|Q70CQ2-2|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34 13.614867670302875 0.2427269026982664 1 V{M(Oxidation (M))|F}{I|L}K[QA]S 7 6 36.832 0 0 3.9244 0 0 0 162.05584131412346 162.05584131412346 16.386532972643906 0 0 0 0 0 1.154901959985743 0.6109243748081782 0 V{M(Oxidation (M))|F}{I|L}K[QA]S 3.9244 - 74 + NaN NaN 138567.8 NaN 8296 2658 10948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10958 52.121 NaN 2270700 35 0 148190 0.327 + 6661 FPNAIEHTL 9 110 521.2716177525932 1040.5286825719863 2 521.2719116210938 MULTI HCD FTMS 0 0 0 10957 1027055.3125 0.6286276021971708 -5 0.14470291137695312 1 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 185.05004568166646 7.3094861853412E-13 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}EHT{I|L} 9 0 + 86.498 0 0 8.3129 8.3129 88.332 0 0 0 1.306298860687761 26.7783825146235 1.306298860687761 2.737065555892727 0 2.2971062485323515 1.6989700043360187 0.4604093769761876 0.8391368308784531 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}EHT{I|L};{M(Oxidation (M))|F}PNA{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QG{I|L}EHT{I|L};{M(Oxidation (M))|F}PGGA{I|L}EHT{I|L};{[QG]|[NA]}P{M(Oxidation (M))|F}{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGA{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]G{I|L}EHT{I|L};[NP]{M(Oxidation (M))|F}A{I|L}EHT{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}K{I|L}PANPE;[{I|L}T]HE{I|L}ANP{M(Oxidation (M))|F} 8.3129;8.0499;7.6086;7.1649;6.8163;6.6215;5.9172;5.7356;5.6612;5.5863 +;+;-;-;-;-;-;-;-;- + 6575 NaN NaN 442967.7 NaN 8297 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10959 52.125 NaN 474800 35 0 75995 0.261 + 10605 IPNPQERTLTL 11 74 641.3618472699594 1280.7091416067187 2 641.3618774414062 MULTI HCD FTMS 0 0 0 10957 307238.21875 0.2726714237710484 6 -0.171417236328125 2 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 88.5755730146405 0.007365916671688877 1 {I|L}PNPQE 6 5 74.633 0 0 5.8274 0 0 0 599.3521825265341 599.3521825265341 40.31743128760553 0 0 0 0 1.7302046884880937 0 1.329689690656103 0.28872548999643577 + {I|L}PNPQE 5.8274 + + 688 + NaN NaN 162463.2 NaN 8298 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10960 52.129 NaN 269660 35 0 20682 0.262 + 33394 YGNTLVEFR 9 75 549.782591221783 1097.550629510366 2 549.78271484375 MULTI HCD FTMS 0 0 0 10957 107876.8203125 0.1749713598208064 9 -0.2634391784667969 3 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 41.8396318013385 0.056899836730939755 1 VTN{[DS]|[MA]|[CV]|TT} 5 7 49.08 0 0 4.4718 0 0 563.3078502771153 0 563.3078502771153 0 31.121506059964545 0 0 0 1.5 0 0.7614393726401688 0.4247425010840047 VTN{[DS]|[MA]|[CV]|TT} 4.4718 - 119 NaN NaN 124293.1 NaN 8299 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10961 52.132 NaN 322460 35 0 48302 0.261 + 6851 FPTGDSKVVL 10 72 531.7950915062437 1061.5756300792873 2 531.795166015625 MULTI HCD FTMS 0 0 0 10957 97819.4140625 1 0 0 4 Unmodified _FPTGDSKVVL_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.I969V|1|0.21|ENSG00000181222|chr17:7503269-7503269|A/G|missense_variant 40.72490554402381 0.1391161235525472 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[NP]D{I|L}K 8 6 31.464 0 0 2.9639 0 0 0 146.08365814638992 146.08365814638992 2.1669877129644988 0 0 0 0 0.7302046884880937 1.3979400086720375 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[NP]D{I|L}K 2.9639 - 373 NaN NaN 146270.1 NaN 8300 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10962 52.135 NaN 207750 35 0 20507 0.261 + 21906 QDNDIFRFV 9 68 577.2858055246371 1152.5570581160741 2 577.2695922851562 MULTI HCD FTMS 0 0 0 10957 21197.43359375 0.17595794422827496 9 -0.2634391784667969 5 Unmodified _QDNDIFRFV_ REV__ENSG00000122543|ENST00000242104|OCM;REV__ENSG00000135175|ENST00000257627|OCM2 17.11289562659939 0.2125047172822487 1 GWND[R{I|L}]VS 8 -1 30.9 0 0 2.681 0 0 0 222.05176721744377 222.05176721744377 9.931197556253402 0 0 0 0 0 0 0 0 GWND[R{I|L}]VS 2.681 - 329 + NaN NaN 119525.1 NaN 8301 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10963 52.139 NaN 195510 35 0 24174 0.262 -1 ISETERSM 8 59 484.72320017509605 NaN 0 484.7066955566406 PEAK HCD FTMS 0 0 0 10957 5911.78076171875 0.21899333794930678 2 -0.055919647216796875 6 Oxidation (M) _ISETERSM(Oxidation (M))_ ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;nc|ENSG00000146414|Q149N8-4|SHPRH 22.736283301280096 0.3829993479967756 1 SM 2 -1 12.959 0 0 1.3395 0 0 131.1293588372045 615.2057589166624 746.3351177538668 0 0 0 0 0 0 0 0.3494850021680094 0 SM 1.3395 + + 37 + NaN NaN 117047.5 NaN 8302 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10964 52.142 NaN 289550 35 0 27549 0.261 + 31911 VYNPVRAEW 9 65 567.2909239661012 1132.5672949990023 2 567.30810546875 MULTI HCD FTMS 0 0 0 10957 70017.6796875 1 0 0 7 Unmodified _VYNPVRAEW_ ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant 18.1463463914782 0.20357593197100715 1 [YV]GG[PA]R{I|L}DW 10 5 + 58.003 0 0 5.1214 5.1214 82.416 0 0 0 19.990575697755787 25.556139435936686 19.990575697755787 1.7609125905568135 0 1.305462187404089 2 0 0.28872548999643577 [YV]GG[PA]R{I|L}DW;[YV]N[PA]R{I|L}DW;[YV]GR[QP]{I|L}DW;[YV]GR{I|L}G[PA]DW;[YV]GG[PA]R{[RE]|[WV]}E;[YV]GR{I|L}[QP]DW;[YV]G[QP]R{I|L}DW;[YV]N[PA]R{[RE]|[WV]}E;[YV]GG[R{I|L}][PA]DW;[YV]GR[QP]{[RE]|[WV]}E 5.1214;4.9659;4.6348;4.2695;4.2193;4.114;4.1032;4.0639;3.8528;3.7327 -;-;-;-;-;-;-;-;-;- 639 NaN NaN 138168.3 NaN 8303 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10965 52.145 NaN 226240 35 0 24519 0.262 + 525 APDAKSFVL 9 51 474.26314873479913 946.5117445363983 2 474.26275634765625 MULTI HCD FTMS 0 0 0 10957 72467.703125 0.36990436023686024 -5 0.14470291137695312 8 Unmodified _APDAKSFVL_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF 30.7034409873982 0.10802119112323902 1 [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 9 0 + 38.434 0 0 4.0606 4.0606 80.697 0 0 0 1.588709367037282 4.277034080690363 1.588709367037282 1.588709367037282 0 1.6549471895720984 0 0 0 + + [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]DKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]{I|L}[NS]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]{I|L}{[SA]|[TG]}[YN]V{I|L} 4.0606;3.8927;3.6118;3.5282;3.444;3.3603;3.0794;2.9116;1.9205;1.5001 +;-;-;-;-;-;-;-;-;- + 198 NaN NaN 121374.2 NaN 8304 2659 10957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10967 52.15 NaN 748110 35 0 118640 0.327 -1 VMAPRTVLL 9 69 508.30222238571173 1014.5898918382235 2 508.3021545410156 MULTI HCD FTMS 0 0 0 10966 371658.4375 0.843394187415084 1 -0.026309967041015625 1 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 31.26834338654808 0.10542797264966089 1 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L} 9 -1 + 53.663 0 0 5.2891 5.2891 87.746 0 0 0 7.147642715192504 35.70370911637767 7.147642715192504 10.044321917401078 0 1.3494850021680094 0 0.3054621874040891 0 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L};[{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}V 5.2891;4.2991 -;- 54 NaN NaN 196818.7 NaN 8305 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10968 52.155 NaN 682500 35 0 89105 0.261 + 10536 IPHMDIEAL 9 76 527.7666675310228 1053.5187821288455 2 527.7655029296875 MULTI HCD FTMS 0 0 0 10966 429402.3125 0.8610559094913595 2 -0.055934906005859375 2 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 64.23631603340823 0.01165516075559909 1 EYDPC{I|L}{I|L} 7 7 55.627 0 0 5.2801 0 0 202.13171584297032 0 202.13171584297032 0 35.99923397525954 0 0 0 1.3807196863200843 0 1.2134679910804405 0 EYDPC{I|L}{I|L} 5.2801 - 542 NaN NaN 195306.9 NaN 8306 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10969 52.158 NaN 381790 35 0 46042 0.261 + 15480 LPDMVVSHL 9 70 513.7679631974995 1025.521373461799 2 513.7678833007812 MULTI HCD FTMS 0 0 0 10966 136737.15625 0.08454986955373107 -18 0.5062141418457031 3 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.92227651296345 0.008466197542043549 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 59.109 0 0 5.7638 5.7638 84.918 0 0 0 43.535853251533965 6.7074145675533 6.7074145675533 4.771212547196626 0 1.9718487496163561 0 0.3807196863200844 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}PDV{M(Oxidation (M))|F}VSH{I|L};{I|L}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ES]|[DT]|[{I|L}C]}SH{I|L} 5.7638;5.2986;2.536 +;-;- + 270 + NaN NaN 142265.5 NaN 8307 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10970 52.162 NaN 134380 35 0 9356.8 0.261 -1 YPDRIMNTF 9 48 586.7737018509798 1171.5328507687595 2 586.77392578125 MULTI HCD FTMS 0 0 0 10966 78286.3828125 0.01955186664768582 137 -3.5284690856933594 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 20.580933911654288 0.18254163597178805 1 V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 5 -1 40.433 0 0 3.4513 0 0 545.2577381818375 0 545.2577381818375 0 22.47425010840047 0 0 0 0.5 0 0 0.5 V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.4513 - 34 NaN NaN 99611.1 NaN 8308 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10971 52.165 NaN 397280 35 0 117020 0.264 + 2764 DYAYLREHF 9 61 405.1925926086187 1212.5559484260561 3 405.1924133300781 MULTI HCD FTMS 0 0 0 10966 100946.3125 0.7351982295787215 -1 0.02960968017578125 5 Unmodified _DYAYLREHF_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 14.838274106304384 0.23215694253501695 1 {[YD]|[{M(Oxidation (M))|F}M]}A 3 6 34.705 0 0 2.8621 0 0 0 860.4058007818935 860.4058007818935 19.220449851406514 0 0 0 0 0.4247425010840047 2 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}A 2.8621 + + 70 + NaN NaN 147476.7 NaN 8309 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10972 52.168 NaN 157180 35 0 12992 0.261 + 32383 VYVVGTAHF 9 43 496.76330804201615 991.5120631508323 2 496.76385498046875 MULTI HCD FTMS 0 0 0 10966 61950.67578125 0.10212264974682884 11 -0.32927703857421875 6 Unmodified _VYVVGTAHF_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 30.224811164608877 0.11021837014094292 1 [YV]VVD 5 5 51.739 0 0 5.2182 0 0 0 413.1970614068969 413.1970614068969 50.47996201223906 0 0 0 0 1.3807196863200843 1.6989700043360187 0.3494850021680094 0 [YV]VVD 5.2182 - 28 + NaN NaN 107768.9 NaN 8310 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10973 52.172 NaN 212080 35 0 33542 0.261 + 2766 DYAYLREHF 9 59 607.2861696717823 1212.5577864103645 2 607.285400390625 MULTI HCD FTMS 0 0 0 10966 34795.23828125 0.5280894806362034 -1 0.02960968017578125 7 Unmodified _DYAYLREHF_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 28.233623360808718 0.11935903763491834 1 DYA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}A{I|L} 8 6 65.706 0 0 5.4188 0 0 0 254.07776819400627 254.07776819400627 43.82190971075161 0 0 0 0 0.805462187404089 2 0 0 DYA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}A{I|L} 5.4188 - 245 + NaN NaN 114984.4 NaN 8311 2660 10966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10975 52.177 NaN 510540 35 0 51332 0.327 + 9968 IEHGIITNW 9 70 541.785089033384 1081.555625133568 2 541.7850952148438 MULTI HCD FTMS 0 0 0 10974 264772.46875 0.10176296094517182 11 -0.31591796875 1 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 43.85829265575387 0.04763305254408404 1 VTNW 4 6 57.735 0 0 5.3382 0 0 563.3066596532278 0 563.3066596532278 0 36.56418474327175 0 0 0 1.4247425010840047 0 0.8494850021680094 0.3054621874040891 VTNW 5.3382 - 93 NaN NaN 178564.6 NaN 8312 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10976 52.181 NaN 760880 35 0 201990 0.261 + 17084 LYLDEAHSI 9 68 530.7690441086023 1059.5235352840045 2 530.7689819335938 MULTI HCD FTMS 0 0 0 10974 388739.03125 0.939335418052301 -2 0.055919647216796875 2 Unmodified _LYLDEAHSI_ ENSG00000100596|ENST00000216484|SPTLC2 149.9946105101851 8.83195450578534E-06 1 {I|L}Y{I|L}DEAHS{I|L} 9 0 + 114.24 0 0 10.782 10.782 97.345 0 0 0 91.47628549839494 13.019447680197146 13.019447680197146 21.139829889124314 0 2.973197507588033 1.6989700043360187 2.193672679568534 0 + + {I|L}Y{I|L}DEAHS{I|L};[Y{I|L}]{I|L}DEAHS{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ET]|[MV]}{[MG]|[TS]}{I|L}Y{I|L} 10.782;8.7872;0.76445 +;+;- + 665 + NaN NaN 201724.4 NaN 8313 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10977 52.185 NaN 586770 35 0 143840 0.261 + -1 EMLDCLLEM 9 76 593.245400848901 1184.476248764602 2 593.24560546875 MULTI HCD FTMS 0 0 0 10974 224732.484375 0.2754454735557098 -5 0.14808273315429688 3 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 1 [{I|L}V]{I|L}DE 5 -1 64.323 0 0 5.4305 0 0 0 612.147472484443 612.147472484443 33.48854030776131 0 0 0 0 1.805462187404089 1.6989700043360187 0.7059771852360797 0 [{I|L}V]{I|L}DE 5.4305 - 127 + NaN NaN 181062 NaN 8314 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10978 52.188 NaN 110550 35 0 8166.4 0.261 -1 TYMKDLYQL 9 48 595.7919115901797 1189.5692702471592 2 595.79150390625 MULTI HCD FTMS 0 0 0 10974 19654.595703125 0.15140480398047604 32 -0.8968048095703125 4 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 15.248480904072842 0.22861284681709862 1 [YT]KM 4 -1 34.297 0 0 2.8831 0 0 0 663.2773531549436 663.2773531549436 9.06295947543775 0 0 0 0 0.3494850021680094 2 0 0 [YT]KM 2.8831 - 32 + NaN NaN 108447.1 NaN 8315 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10979 52.191 NaN 60636 35 0 5327.8 0.262 + 8366 GYLADPAKF 9 41 491.2555605663153 980.4965681994306 2 491.25531005859375 MULTI HCD FTMS 0 0 0 10974 5222.67626953125 0.026927860779183365 8 -0.23378753662109375 5 Unmodified _GYLADPAKF_ ENSG00000137547|ENST00000260102|MRPL15 21.536976647645854 0.1742816388551942 1 [YG]{I|L}ADK[PA]{M(Oxidation (M))|F} 9 2 + 45.812 0 0 4.6723 4.6723 90.332 0 0 0 25.32760017977509 10.63486257521106 10.63486257521106 45.81215024481537 0 0.5 2 0 0 [YG]{I|L}ADK[PA]{M(Oxidation (M))|F} 4.6723 - 30 + NaN NaN 97093.6 NaN 8316 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10980 52.195 NaN 118780 35 0 10012 0.261 + -1 FVQLTGEMF 9 64 544.2589840534737 NaN 0 544.259521484375 PEAK HCD FTMS 0 0 0 10974 18530.001953125 0.7167752882026616 2 -0.05924224853515625 6 Oxidation (M) _FVQLTGEM(Oxidation (M))F_ REV__ENST00000507019.5_1_4:84380905-84382182:+|nuORF 15.847184025352803 0.21527282152051216 1 E{I|L}N 3 -1 15.317 0 0 1.4098 0 0 252.11005687472226 475.1840914361938 727.2941483109161 0 0 0 0 0 0.5 0 0 0 E{I|L}N 1.4098 - 45 + NaN NaN 112051.6 NaN 8317 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10981 52.198 NaN 109740 35 0 16090 0.261 -1 RFDEAYIYM 9 40 612.2739516928943 1222.5333504525886 2 612.2741088867188 MULTI HCD FTMS 0 0 0 10974 25551.75390625 0.20149322326552235 8 -0.23378753662109375 7 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 9.38312468134398 0.279288223203164 1 {I|L}Y{M(Oxidation (M))|F} 3 -1 34.253 0 0 2.8018 0 0 781.3397083966812 0 781.3397083966812 0 27.26280941356464 0 0 0 0.805462187404089 0 0 0 {I|L}Y{M(Oxidation (M))|F} 2.8018 + + 21 NaN NaN 104602.7 NaN 8318 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10982 52.201 NaN 183930 35 0 25738 0.264 -1 0 48 416.2125723485702 415.2052958819702 1 416.22100830078125 MULTI HCD FTMS 0 0 0 10974 3296.4462890625 0.02571565241690006 -17 0.47321319580078125 8 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 3.2502 0 0 250.12663484857018 0 250.12663484857018 0 13.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.2502 - 3 + NaN NaN 115523.7 NaN 8319 2661 10974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10984 52.206 NaN 1626200 35 0 406070 0.327 + 30016 VFPEKGYSF 9 70 537.2690392578539 1072.5235255825078 2 537.2688598632812 MULTI HCD FTMS 0 0 0 10983 608966.4375 0.8251206691162516 2 -0.05254364013671875 1 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 29.84058131909904 0.11198220037953927 1 WS{M(Oxidation (M))|F} 3 7 26.414 0 0 2.4628 0 0 634.3480702130875 0 634.3480702130875 0 0.6124313711587348 0 0 0 0.7742275032520141 0 0 0 WS{M(Oxidation (M))|F} 2.4628 - 102 NaN NaN 326836.4 NaN 8320 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10985 52.211 NaN 452290 35 0 102540 0.261 + 33427 YGSRLDYFQ 9 66 574.771658418407 1147.528763903614 2 574.7722778320312 MULTI HCD FTMS 0 0 0 10983 232011.78125 0.24355646420948257 23 -0.6539726257324219 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 1 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 8 74.607 0 0 6.5015 0 0 220.08328804338254 0 220.08328804338254 0 59.39055965521284 0 0 0 2.8494850021680094 0 1.6549471895720984 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 6.5015 - 377 + NaN NaN 156097.5 NaN 8321 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10986 52.214 NaN 157550 35 0 38820 0.263 + 17792 MFEATTWEMAF 11 50 455.19447235924906 1362.5615876779473 3 455.19464111328125 MULTI HCD FTMS 0 0 0 10983 39958.21875 0.4914618193223073 10 -0.28629302978515625 3 Unmodified _MFEATTWEMAF_ ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;OPA1-ATP13A4|1|fusion 1.3296431237094175 0.4130893034510334 1 {I|L}{I|L} 2 11 20.969 0 0 1.5389 0 0 1118.382750958477 0 1118.382750958477 0 5.484550065040281 0 0 0 0 0 0 0 {I|L}{I|L} 1.5389 - 7 NaN NaN 106957 NaN 8322 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10987 52.218 NaN 110710 35 0 14173 0.261 + 34174 YPDGNEGAIRF 11 46 619.7938817722211 1237.573210611242 2 619.7937622070312 MULTI HCD FTMS 0 0 0 10983 46651.49609375 0.6478462017827784 3 -0.08587265014648438 4 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 25.997395711884035 0.23056625056501562 1 YPDGNEQ{I|L}[R{M(Oxidation (M))|F}] 10 2 + 72.211 0 0 5.8349 5.8349 86.942 0 0 0 72.21130963036558 7.269987279362624 7.269987279362624 9.164539485499255 0 0.805462187404089 0 0 0 YPDGNEQ{I|L}[R{M(Oxidation (M))|F}];YPDGNE[AG]{I|L}[R{M(Oxidation (M))|F}];YPDGGGEQ{I|L}[R{M(Oxidation (M))|F}];YPDGGGE[AG]{I|L}[R{M(Oxidation (M))|F}] 5.8349;5.0944;5.0944;4.3568 -;+;-;- + 102 + NaN NaN 102219.3 NaN 8323 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10988 52.221 NaN 79450 35 0 8664.2 0.261 -1 VYNENLVHMI 10 48 624.3080337249818 1246.6015145167635 2 624.3067626953125 MULTI HCD FTMS 0 0 0 10983 42207.5703125 0.16927849897556874 24 -0.6802101135253906 5 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 34.93206674587334 0.18938571726943593 1 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}V 7 -1 50.278 0 0 4.0332 0 0 0 412.16630696924125 412.16630696924125 50.27774152042568 0 0 0 0 1.7302046884880937 2 0 0 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}V 4.0332 + + 18 + NaN NaN 97038.2 NaN 8324 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10989 52.224 NaN 64808 35 0 8432.6 0.261 + 24989 RYVFQSENTF 10 38 645.8094151292885 1289.6042773253769 2 645.8086547851562 MULTI HCD FTMS 0 0 0 10983 13301.658203125 0.07314800390646883 8 -0.23381423950195312 6 Unmodified _RYVFQSENTF_ ENSG00000107882|ENST00000369902|SUFU;nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU 17.44264345198275 0.3479594151168503 1 {M(Oxidation (M))|F}Q{[ES]|[DT]|[{I|L}C]}NT{M(Oxidation (M))|F} 7 3 39.213 0 0 3.0407 0 0 418.23274428535314 0 418.23274428535314 0 39.212819689744975 0 0 0 0.5 0 0.4247425010840047 0 + {M(Oxidation (M))|F}Q{[ES]|[DT]|[{I|L}C]}NT{M(Oxidation (M))|F} 3.0407 + + 26 NaN NaN 91784.9 NaN 8325 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10990 52.228 NaN 236500 35 0 47748 0.262 + 31367 VYADQPHIF 9 53 545.2720286556864 1088.5295043781728 2 545.7904663085938 MULTI HCD FTMS 0 0 0 10983 49318.9375 0.18851933331159312 -5 0.14478302001953125 7 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 43.77239144664712 0.04802738721622131 1 VYADQC(Carbamidomethyl (C)) 6 4 77.256 0 0 7.0972 0 0 0 349.21674524478755 349.21674524478755 72.65153777800478 0 0 0 0 1.8494850021680094 2 0 0 VYADQC(Carbamidomethyl (C)) 7.0972 - 188 + NaN NaN 121626.3 NaN 8326 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10991 52.231 NaN 57719 35 0 7751.4 0.262 + 1833 CSSSCNVGF 9 37 452.1697121154222 NaN 0 452.1695251464844 PEAK HCD FTMS 0 0 0 10983 5827.27001953125 0.16293942209621085 3 -0.08587265014648438 8 Unmodified _CSSSCNVGF_ REV__ENSG00000162591|ENST00000356575|MEGF6;REV__nc|ENSG00000162591|O75095-2|MEGF6 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89978 NaN 8327 2662 10983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10993 52.236 NaN 518140 35 0 116380 0.327 -1 TSRPQPSSSAM 11 81 582.7694480443604 1163.5243431555207 2 582.76953125 MULTI HCD FTMS 0 0 0 10992 214775.578125 0.14126071311886076 9 -0.25667572021484375 1 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 14.405379775768559 0.3315678654765638 1 STSVSA{M(Oxidation (M))|F} 7 -1 68.607 0 0 5.8965 0 0 466.23248474052616 0 466.23248474052616 0 54.62729794578465 0 0 0 2.805462187404089 0 0.3252574989159953 0 STSVSA{M(Oxidation (M))|F} 5.8965 - 665 NaN NaN 161804 NaN 8328 2663 10992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10994 52.24 NaN 327100 35 0 30261 0.261 + 20898 PKERMHVMS 9 62 557.7794636150969 1113.5443742969937 2 557.7799682617188 MULTI HCD FTMS 0 0 0 10992 136182.140625 0.09075955743248394 12 -0.3386383056640625 2 Unmodified _PKERMHVMS_ REV__ENSG00000256294|ENST00000262894|ZNF225 15.847184025352803 0.2234401846867398 1 VTN{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 46.268 0 0 4.155 0 0 563.3070545880875 0 563.3070545880875 0 32.923129586313436 0 0 0 1.4247425010840047 0 0.6549471895720985 0.3252574989159953 VTN{[MS]|[{M(Oxidation (M))|F}A]} 4.155 - 104 NaN NaN 133762.7 NaN 8329 2663 10992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10995 52.244 NaN 512550 35 0 85825 0.261 + 15481 LPDMVVSHL 9 81 513.7679631974995 1025.521373461799 2 513.7681884765625 MULTI HCD FTMS 0 0 0 10992 184029.828125 0.11379275676551377 -15 0.4140892028808594 3 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 88.95385435242217 0.004553379958619559 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 93.867 0 0 9.1531 9.1531 96.066 0 0 0 79.88737203213589 8.256886463274284 8.256886463274284 19.247425010840047 0 2.579689690656103 1.6989700043360187 0.4247425010840047 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};[DP]{I|L}[MT]{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}VV{I|L}SH{I|L};[{I|L}P]D[MT][HS]{I|L}{I|L};[DP]{I|L}[MT][HS]{I|L}{I|L} 9.1531;7.2762;5.2999;4.938;4.7432;3.7054;2.9616;2.9243;2.1326;0.15629 +;+;-;-;-;-;-;-;-;- + 450 + NaN NaN 165034.3 NaN 8330 2663 10992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10996 52.247 NaN 121330 35 0 24471 0.261 + -1 IYMRGIQVCF 10 49 434.88214623931003 NaN 0 434.8819274902344 PEAK HCD FTMS 0 0 0 10992 47822.15625 0.4474135072884439 196 -5.1258697509765625 4 Carbamidomethyl (C),Oxidation (M) _IYM(Oxidation (M))RGIQVC(Carbamidomethyl (C))F_ REV__L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|37|2|anti-sense 3.5870582119611467 0.3371142643538189 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104535.6 NaN 8331 2663 10992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10997 52.251 NaN 93833 35 0 6020.6 0.261 + 3336 EELGFRPEY 9 57 570.2720721482095 NaN 0 570.2716064453125 PEAK HCD FTMS 0 0 0 10992 19978.087890625 0.4451643600807014 -4 0.11516189575195312 5 Unmodified _EELGFRPEY_ ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion 16.149105407346934 0.21324626030841579 1 {I|L}G 2 7 7.9588 0 0 0.69904 0 0 258.07898208763146 707.3137911432249 965.3927732308564 0 0 0 0 0 0 0 0 0 + {I|L}G 0.69904 + + 24 + NaN NaN 99518 NaN 8332 2663 10992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 10998 52.254 NaN 168090 35 0 8045.7 0.261 + 24493 RYLEKFYGL 9 62 594.8242869818937 1187.6340210305873 2 595.5548706054688 MULTI HCD FTMS 0 0 0 10992 25784.580078125 0.671207903286145 -4 0.11516189575195312 6 Unmodified _RYLEKFYGL_ ENSG00000262406|ENST00000571244|MMP12 2.735195868890462 0.3302822318919627 1 E 1 8 6.9897 0 0 0.58854 0 0 391.2862095524949 664.2829522891022 1055.5691618415972 0 0 0 0 0 0 0 0 0 + E 0.58854 + + 52 + NaN NaN 105678.9 NaN 8333 2663 10992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11000 52.259 NaN 2812100 35 0 217240 0.327 + 6662 FPNAIEHTL 9 108 521.2716177525932 1040.5286825719863 2 521.27197265625 MULTI HCD FTMS 0 0 0 10999 1633805.625 1 0 0 1 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 171.0860797660465 3.235337749433058E-09 1 {I|L}MNA{I|L}EH 7 4 95.175 0 0 9.1468 0 0 0 229.1193789117797 229.1193789117797 18.434202514923697 0 0 0 0 2.5669015600442577 1.6989700043360187 2.4247425010840047 0 {I|L}MNA{I|L}EH 9.1468 - 5647 + NaN NaN 512009.5 NaN 8334 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11001 52.263 NaN 244420 35 0 23557 0.261 -1 TPMFREYSL 9 66 580.2762161476448 1158.5378793620896 2 580.2764282226562 MULTI HCD FTMS 0 0 0 10999 107962.4609375 0.7172759594020995 -3 0.0821685791015625 2 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 34.221707139014875 0.09187037853496335 1 [Y{I|L}]WWEYS{I|L} 8 -1 + 45.839 0 0 3.9566 3.9566 87.695 0 0 0 9.921525057367404 11.911225100727592 9.921525057367404 19.51790047062772 0 0.5 1.6989700043360187 0.3494850021680094 0 [Y{I|L}]WWEYS{I|L};{M(Oxidation (M))|F}V[YT]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WP];[Y{I|L}]WW[YT]D{I|L};[Y{I|L}]WW[YT]VE 3.9566;2.2719;1.9066;1.1931 -;-;-;- 172 NaN NaN 124292.6 NaN 8335 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11002 52.267 NaN 109970 35 0 18094 0.261 + 10606 IPNPQERTLTL 11 45 641.3618472699594 1280.7091416067187 2 641.3618774414062 MULTI HCD FTMS 0 0 0 10999 79336.4375 0.07041044391567185 11 -0.31571197509765625 3 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 17.04857598603903 0.30853761023565673 1 {I|L}PN 3 8 30.005 0 0 2.3428 0 0 0 953.5076191395259 953.5076191395259 18.767959391884546 0 0 0 0 0.3807196863200844 0 0 0 + {I|L}PN 2.3428 + + 41 + NaN NaN 107612.5 NaN 8336 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11003 52.27 NaN 162790 35 0 36307 0.261 -1 MPQSMPEYAL 10 50 599.7594141413936 1197.504275349587 2 599.7598266601562 MULTI HCD FTMS 0 0 0 10999 55230.14453125 0.48336931759092433 5 -0.15161895751953125 4 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 1 YA{I|L} 3 -1 36.198 0 0 3.0228 0 0 832.3095216597095 0 832.3095216597095 0 29.20818753952375 0 0 0 1 0 0 0 YA{I|L} 3.0228 + + 37 NaN NaN 117969.6 NaN 8337 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11004 52.274 NaN 118590 35 0 18933 0.264 -1 0 36 424.08158163941823 NaN 0 424.0813903808594 PEAK HCD FTMS 0 0 0 10999 81617.0390625 0.5054635840573389 198 -5.1915435791015625 5 NaN NaN 1 K 1 -1 4.6041 0 0 0.54412 0 0 441.0303985309865 273.9931734674438 715.0235719984303 0 0 0 0 0 0 0 0 0 K 0.54412 - 2 + NaN NaN 116237.1 NaN 8338 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11005 52.277 NaN 292520 35 0 46532 0.261 + 24382 RYIPTAAAF 9 61 505.276884993559 1008.539217053918 2 505.2769775390625 MULTI HCD FTMS 0 0 0 10999 99834.984375 0.013871026233798696 56 -1.4719505310058594 6 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 1 AA{M(Oxidation (M))|F} 3 6 34.693 0 0 3.4399 0 0 701.3857343921726 0 701.3857343921726 0 21.989700043360187 0 0 0 1 0 0 0 + AA{M(Oxidation (M))|F} 3.4399 + + 42 NaN NaN 128596.7 NaN 8339 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11006 52.281 NaN 154790 35 0 24230 0.261 -1 HAVIQEYML 9 54 560.2786811148007 1118.5428092964014 2 560.2781982421875 MULTI HCD FTMS 0 0 0 10999 64956.59765625 0.11384570921838597 36 -0.9849357604980469 7 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 17.11289562659939 0.2125047172822487 1 Y{M(Oxidation (M))|F}{I|L} 3 -1 35.445 0 0 3.1689 0 0 677.3509388654312 0 677.3509388654312 0 27.37334396171555 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F}{I|L} 3.1689 + + 41 NaN NaN 117960.7 NaN 8340 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11007 52.284 NaN 129290 35 0 26185 0.261 + -1 LSSRCNFM 8 47 487.2150349133786 NaN 0 487.2143859863281 PEAK HCD FTMS 0 0 0 10999 15143.3857421875 0.5084583333306009 8 -0.2337493896484375 8 Oxidation (M) _LSSRCNFM(Oxidation (M))_ REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF 8.593279151180031 0.38822285293237185 1 PN{I|L}P 4 -1 15.433 0 0 1.5871 0 0 147.9390920572153 400.2169588678344 548.1560509250497 0 0 0 0 0 0 0 0 0 PN{I|L}P 1.5871 - 34 + NaN NaN 100211.3 NaN 8341 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11008 52.287 NaN 80385 35 0 7504 0.261 + 5644 FNAQIFNVL 9 42 533.2905009191567 NaN 0 533.2515258789062 PEAK HCD FTMS 0 0 0 10999 14220.06640625 0.4417141728345208 -6 0.16773605346679688 9 Unmodified _FNAQIFNVL_ REV__ENSG00000144481|ENST00000324695|TRPM8 6.723162845929126 0.26266733336404485 1 D 1 -1 6.9897 0 0 0.65658 0 0 711.4580942681977 235.0643709772094 946.522465245407 0 0 0 0 0 0 0 0 0 D 0.65658 - 13 + NaN NaN 96397.5 NaN 8342 2664 10999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11010 52.292 NaN 395130 35 0 55066 0.327 + -1 EVTSWLSM 8 57 484.72320017509605 NaN 0 484.706787109375 PEAK HCD FTMS 0 0 0 11009 13118.912109375 0.48597105828064396 8 -0.22661590576171875 1 Oxidation (M) _EVTSWLSM(Oxidation (M))_ REV__ENST00000562354.2_1_16:31719651-31719993:+|nuORF 32.116972079565 0.3772972708913157 1 DK[MD]{I|L}S 6 -1 15.896 0 0 1.6431 0 0 113.08215063907444 162.02312647037346 275.1052771094479 0 0 0 0 0 0.3054621874040891 0 1.1861818737241734 0 DK[MD]{I|L}S 1.6431 - 86 + NaN NaN 141611.1 NaN 8343 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11011 52.297 NaN 382130 35 0 46052 0.261 + 526 APDAKSFVL 9 63 474.26314873479913 946.5117445363983 2 474.2623596191406 MULTI HCD FTMS 0 0 0 11009 183071.171875 0.9344690364123385 1 -0.029544830322265625 2 Unmodified _APDAKSFVL_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF 51.41523569358685 0.02959097413485123 1 [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 9 0 + 67.748 0 0 7.1576 7.1576 86.448 0 0 0 13.049829722017904 48.91892829714065 13.049829722017904 2.7937748157192033 0 1.805462187404089 1.5228787452803376 0.3494850021680094 0.28872548999643577 + + [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DAKVYA{I|L};[PA]DKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DKAVYA{I|L};[DP]AAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AAKVYA{I|L};[DP]AKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AKAVYA{I|L} 7.1576;6.8624;6.6164;6.3212;4.726;4.4308;4.1848;3.8896 +;-;-;-;-;-;-;- + 287 NaN NaN 141362.5 NaN 8344 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11012 52.3 NaN 326040 35 0 48607 0.261 -1 VMAPRTVLL 9 52 508.3021610373598 1014.5897691415196 2 508.30218505859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 16.149105407346934 0.22083165093524068 1 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L} 9 -1 + 36.628 0 0 3.6102 3.6102 88.624 0 0 0 3.4408997028130344 19.63878728569697 3.4408997028130344 36.62848732905716 0 1.3494850021680094 0 0 0 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L} 3.6102 - 29 NaN NaN 136563.4 NaN 8345 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11013 52.303 NaN 215890 35 0 21699 0.261 + -1 QSRTHVEEM 9 66 566.7584639938195 1131.502375054439 2 568.2622680664062 MULTI HCD FTMS 0 0 0 11009 123984.171875 0.7854672191375962 -10 0.2865257263183594 4 Oxidation (M) _QSRTHVEEM(Oxidation (M))_ REV__ENST00000510726.1_3_3:141145004-141146592:+|nuORF 12.531546534597751 0.2520865569484384 1 EE{I|L}EE{M(Oxidation (M))|F} 6 -1 45.054 0 0 3.9818 0 0 337.2003863843202 0 337.2003863843202 0 15.083559388717369 0 0 0 0 0 0.805462187404089 0 EE{I|L}EE{M(Oxidation (M))|F} 3.9818 - 162 + NaN NaN 115586.4 NaN 8346 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11014 52.307 NaN 144980 35 0 19340 0.261 + 33246 YFIFNIHYP 9 59 607.3086307762865 NaN 0 607.308349609375 PEAK HCD FTMS 0 0 0 11009 56090.12890625 0.591353158560995 4 -0.11828994750976562 5 Unmodified _YFIFNIHYP_ REV__ENSG00000078589|ENST00000171757|P2RY10 7.910154910731844 0.25691533546754686 1 YAY{I|L} 4 -1 12.027 0 0 0.99182 0 0 115.07272873901964 584.2618502252561 699.3345789642758 0 0 0 0 0 0 0 0 0 YAY{I|L} 0.99182 - 56 + NaN NaN 100179.6 NaN 8347 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11015 52.31 NaN 133670 35 0 20894 0.261 -1 NENDIRVMF 9 70 577.2692143315483 1152.5238757298964 2 577.2692260742188 MULTI HCD FTMS 0 0 0 11009 32042.82421875 0.40942551396784677 7 -0.20042037963867188 6 Oxidation (M) _NENDIRVM(Oxidation (M))F_ ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319-3|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319|CELF2 34.93206674587334 0.08860942999206235 1 {[QD]|[EN]|[WG]|[KD]|[RS]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 44.376 0 0 3.8503 3.8503 84.614 0 0 0 31.104699792700572 6.328402799419166 6.328402799419166 9.208187539523749 0 1.805462187404089 0 0 0 {[QD]|[EN]|[WG]|[KD]|[RS]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}GGD[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[PA][R{I|L}]C(Carbamidomethyl (C)){M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8503;3.0514;2.4353 +;-;- + 116 + NaN NaN 104357.3 NaN 8348 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11016 52.313 NaN 144060 35 0 10873 0.261 + 33395 YGNTLVEFR 9 62 549.782591221783 1097.550629510366 2 549.782470703125 MULTI HCD FTMS 0 0 0 11009 42478.78125 0.06889867626161243 15 -0.42360687255859375 7 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 16.149105407346934 0.22083165093524068 1 TN{[DS]|[MA]|[CV]|TT} 4 7 32.945 0 0 3.0017 0 0 662.3751667191535 0 662.3751667191535 0 14.361818737241734 0 0 0 1.5 0 0 0.3252574989159953 TN{[DS]|[MA]|[CV]|TT} 3.0017 - 45 + NaN NaN 97546.3 NaN 8349 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11017 52.317 NaN 106740 35 0 15586 0.261 -1 IGYMCCPF 8 53 495.69793231096247 989.381311688725 2 495.69781494140625 MULTI HCD FTMS 0 0 0 11009 36240.42578125 0.8444461495597936 1 -0.029544830322265625 8 Carbamidomethyl (C) _IGYMC(Carbamidomethyl (C))CPF_ ENSG00000169299|ENST00000381967|PGM2 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5651 0 0 824.3024217734891 0 824.3024217734891 0 11.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5651 + + 9 + NaN NaN 109507 NaN 8350 2665 11009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11019 52.322 NaN 392340 35 0 100370 0.326 + 17085 LYLDEAHSI 9 73 530.7690441086023 1059.5235352840045 2 530.7691040039062 MULTI HCD FTMS 0 0 0 11018 194048.265625 0.4688914517460956 3 -0.0887451171875 1 Unmodified _LYLDEAHSI_ ENSG00000100596|ENST00000216484|SPTLC2 85.27202061508552 0.004649858145912257 1 {I|L}Y{I|L}DEA 6 3 86.305 0 0 8.1457 0 0 0 352.16352258853755 352.16352258853755 72.81025342180754 0 0 0 0 1.8252574989159953 1.6989700043360187 1.2302046884880937 0 + {I|L}Y{I|L}DEA 8.1457 + + 264 + NaN NaN 159517.2 NaN 8351 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11020 52.326 NaN 365360 35 0 31475 0.261 + 9969 IEHGIITNW 9 66 541.785089033384 1081.555625133568 2 541.7849731445312 MULTI HCD FTMS 0 0 0 11018 178561.28125 0.068628452104364 16 -0.4532012939453125 2 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 37.97399986684836 0.07464525285885698 1 VTNW 4 6 54.24 0 0 5.015 0 0 563.3040876923986 0 563.3040876923986 0 30.42796583575644 0 0 0 1.4247425010840047 0 0.805462187404089 0 VTNW 5.015 - 174 NaN NaN 145176.3 NaN 8352 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11021 52.33 NaN 319200 35 0 40261 0.261 + 17214 LYNPKITSEL 10 65 589.3269344617403 1176.6393159902805 2 589.3267822265625 MULTI HCD FTMS 0 0 0 11018 171832.03125 0.9994182839859244 -1 0.029544830322265625 3 Unmodified _LYNPKITSEL_ ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1 71.70789743142352 0.01556163018108538 1 [Y{I|L}]N[KP]{I|L}TSE{I|L} 10 0 + 80.851 0 0 6.8713 6.8713 88.873 0 0 0 24.25968732272281 70.6736477506638 24.25968732272281 9.164539485499262 0 2.305462187404089 1.6989700043360187 0.6861818737241735 0 + + [Y{I|L}]N[KP]{I|L}TSE{I|L};[Y{I|L}]GG[KP]{I|L}TSE{I|L};[YN]{I|L}[KP]{I|L}TSE{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[PG]{I|L}[KP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN][RK][HA]{I|L}Y{I|L} 6.8713;6.0925;4.4908;0.78883;0.55059 +;-;-;-;- + 429 NaN NaN 130689.1 NaN 8353 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11022 52.333 NaN 140410 35 0 9363.7 0.261 -1 YPDRIMNTF 9 63 586.7737018509798 1171.5328507687595 2 586.7739868164062 MULTI HCD FTMS 0 0 0 11018 67564.875 0.016874191636002296 143 -3.7017555236816406 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 22.774965066868997 0.16358569359229336 1 {I|L}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}T] 5 -1 24.718 0 0 2.1099 0 0 531.2441273419937 0 531.2441273419937 0 -0.7711470149614996 -0.7711470149614996 0 0 0.75 0 0 0 {I|L}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}T] 2.1099 + + 133 NaN NaN 117461.4 NaN 8354 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11023 52.336 NaN 172400 35 0 16322 0.261 + 32728 WPVGGDSRF 9 55 510.7487865659366 1019.4830201986732 2 510.7484436035156 MULTI HCD FTMS 0 0 0 11018 61389.1015625 0.600557834092278 6 -0.17087554931640625 5 Unmodified _WPVGGDSRF_ ENSG00000141738|ENST00000309156|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 19.361941925380144 0.1930734562688509 1 WPV[DN]A[YR] 8 4 + 42 0 0 4.1197 4.1197 80.246 0 0 0 21.030768805449185 2.174617874626037 2.174617874626037 0.5115252244738144 0 1.2614393726401687 0 0 0 WPV[DN]A[YR];WPVG[DG]A[YR] 4.1197;4.0695 -;- 155 + NaN NaN 105479.9 NaN 8355 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11024 52.34 NaN 230030 35 0 27800 0.261 + 2355 DPDMVDVFMDH 11 45 440.84569395015916 1319.5152524506775 3 440.8458251953125 MULTI HCD FTMS 0 0 0 11018 29918.244140625 0.4323158209877888 -1 0.029544830322265625 6 Unmodified _DPDMVDVFMDH_ CON__P20930;ENSG00000143631|ENST00000368799|FLG;FLG|p.Q3155Sfs*61|1|0.08|ENSG00000143631|chr1:152305423-152305423|G/-|frameshift_variant;FLG|p.S2719Rfs*26|1|0.08|ENSG00000143631|chr1:152306729-152306730|-/ACACC|frameshift_variant;FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant 2.6312355333042263 0.4073809613003177 1 E{I|L}{M(Oxidation (M))|F}E[HC] 6 9 32.686 0 0 2.4771 0 0 543.1918812482437 0 543.1918812482437 0 13.757834597134995 0 0 0 0 0 0.8494850021680094 0 E{I|L}{M(Oxidation (M))|F}E[HC] 2.4771 - 26 NaN NaN 111558.9 NaN 8356 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11025 52.343 NaN 162170 35 0 38638 0.261 + 2765 DYAYLREHF 9 55 405.1925926086187 1212.5559484260561 3 405.19287109375 MULTI HCD FTMS 0 0 0 11018 51573.26953125 0.37561130777274526 5 -0.15792465209960938 7 Unmodified _DYAYLREHF_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 10.073929032068715 0.27331982688540024 1 {[YD]|[{M(Oxidation (M))|F}M]}A 3 6 34.705 0 0 2.8621 0 0 0 860.4054242680809 860.4054242680809 17.62665603828445 0 0 0 0 0.4247425010840047 2 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}A 2.8621 + + 26 + NaN NaN 105453.8 NaN 8357 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11026 52.346 NaN 95075 35 0 6343.7 0.261 -1 MVSDEYEQL 9 48 565.2396314481397 1128.4647099630793 2 565.2396850585938 MULTI HCD FTMS 0 0 0 11018 31991.64453125 0.02648285348735755 39 -1.0265083312988281 8 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 13.90604991867851 0.24021115267848145 1 N{[NV]|[RG]}YEQ{I|L} 7 -1 38.984 0 0 3.4546 0 0 250.05865676093907 0 250.05865676093907 0 28.01493210686104 0 0 0 0.4247425010840047 0 0 0 N{[NV]|[RG]}YEQ{I|L} 3.4546 - 67 NaN NaN 103655.7 NaN 8358 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11027 52.35 NaN 78989 35 0 5563.4 0.261 -1 FVAFALCMF 9 52 553.2664355622011 NaN 0 553.2815551757812 PEAK HCD FTMS 0 0 0 11018 14846.873046875 0.6331903540413828 -2 0.06287384033203125 9 Carbamidomethyl (C) _FVAFALC(Carbamidomethyl (C))MF_ ENSG00000110660|ENST00000525815|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;nc|ENSG00000110660|Q8IXU6-3|SLC35F2 14.581692164780916 0.22376707489839515 1 YV 2 -1 9.464 0 0 0.85684 0 0 165.04741240447646 674.3177584283811 839.3651708328575 0 0 0 0 0 0 0 0 0 YV 0.85684 - 13 + NaN NaN 95933.2 NaN 8359 2666 11018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11029 52.355 NaN 1109100 35 0 334240 0.326 + -1 EMLDCLLEM 9 84 593.245400848901 1184.476248764602 2 593.2456665039062 MULTI HCD FTMS 0 0 0 11028 799050.1875 0.9793633435006884 1 -0.029590606689453125 1 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 15.847184025352803 0.2234401846867398 1 {I|L}V{I|L}DE 5 -1 84.438 0 0 7.1287 0 0 0 612.145862980536 612.145862980536 41.95438843663118 0 0 0 0 1.8494850021680094 1.6989700043360187 1.0994850021680094 0 {I|L}V{I|L}DE 7.1287 - 163 + NaN NaN 254962.7 NaN 8360 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11030 52.359 NaN 1314200 35 0 324150 0.261 + 30017 VFPEKGYSF 9 67 537.2690392578539 1072.5235255825078 2 537.2688598632812 MULTI HCD FTMS 0 0 0 11028 554429 0.7512250253651365 7 -0.18380355834960938 2 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 28.494509381512117 0.11816142465008336 1 EPPM 4 8 28.532 0 0 2.6603 0 0 600.2863636701187 0 600.2863636701187 0 3.4385139890380323 0 0 0 0.5 0 0 0 EPPM 2.6603 - 92 NaN NaN 283558.1 NaN 8361 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11031 52.363 NaN 579690 35 0 65212 0.261 + 10537 IPHMDIEAL 9 73 527.7666675310228 1053.5187821288455 2 527.7655639648438 MULTI HCD FTMS 0 0 0 11028 393215.84375 0.7884932523891999 9 -0.2429046630859375 3 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 61.357469665136826 0.01568246967499496 1 EYDPC{I|L}{I|L} 7 7 57.573 0 0 5.4648 0 0 202.131639549025 0 202.131639549025 0 39.61381036606788 0 0 0 1.3807196863200843 0 1.1861818737241734 0 EYDPC{I|L}{I|L} 5.4648 - 364 NaN NaN 166200.8 NaN 8362 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11032 52.366 NaN 363910 35 0 76807 0.261 + -1 KCHQQFVAM 9 64 574.771658418407 1147.528763903614 2 574.772216796875 MULTI HCD FTMS 0 0 0 11028 135979.0625 0.14274524979114717 28 -0.7747688293457031 4 Carbamidomethyl (C) _KC(Carbamidomethyl (C))HQQFVAM_ REV__MAP3K7|p.E524Q|1|0.25|ENSG00000135341|chr6:90518517-90518517|C/G|missense_variant 16.942295170755138 0.21397866736869717 1 [YG]SVSTS{M(Oxidation (M))|F}V 9 -1 76.635 0 0 6.6782 0 0 0 217.06029926885404 217.06029926885404 40.70493438421167 0 0 0 0 2.75 0 1.2302046884880937 0 [YG]SVSTS{M(Oxidation (M))|F}V 6.6782 - 688 NaN NaN 144618.3 NaN 8363 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11033 52.369 NaN 501670 35 0 103070 0.262 + 42 AATEQEISL 9 49 481.2457628414039 960.4769727496079 2 481.2454833984375 MULTI HCD FTMS 0 0 0 11028 275914.375 0.5257211736556725 -3 0.09576034545898438 5 Unmodified _AATEQEISL_ BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3 65.47368725323818 0.010552856507075443 1 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L} 9 4 + 85.697 0 0 8.9223 8.9223 90.476 0 0 0 5.482099529372277 16.478174818886373 5.482099529372277 5.482099529372277 0 1.8494850021680094 1.5228787452803376 1.2302046884880937 0.3807196863200844 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EQE{I|L}S{I|L};{[TV]|[{I|L}S]}[DG][AG]E{I|L}S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E[AG]E{I|L}S{I|L} 8.9223;8.3515;7.5672;7.3872 -;-;-;- 139 NaN NaN 156573.6 NaN 8364 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11034 52.373 NaN 296630 35 0 31542 0.261 + 9321 HPQYEVVEI 9 61 557.2826430998581 NaN 0 557.2827758789062 PEAK HCD FTMS 0 0 0 11028 108369.8828125 1 0 0 6 Unmodified _HPQYEVVEI_ ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant 17.11289562659939 0.20677709319598864 1 NTV{M(Oxidation (M))|F}GV 6 8 22.74 0 0 2.0439 0 0 235.08303414717858 257.1145113580688 492.1975455052474 0 0 0 0 0 1 0 0.3054621874040891 0 NTV{M(Oxidation (M))|F}GV 2.0439 - 101 + NaN NaN 130998.9 NaN 8365 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11035 52.376 NaN 158770 35 0 13324 0.261 + 4437 EYGPECQYII 10 49 607.773921254685 1213.5332895761699 2 607.7735595703125 MULTI HCD FTMS 0 0 0 11028 75106.3203125 1 0 0 7 Unmodified _EYGPECQYII_ REV__ENSG00000165124|ENST00000374469|SVEP1;REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1 21.536976647645854 0.3096624038397699 1 {I|L}{I|L} 2 -1 16.454 0 0 1.3558 0 0 969.349075988674 0 969.349075988674 0 8.249168106772727 0 0 0 0 0 0 0 {I|L}{I|L} 1.3558 + + 50 NaN NaN 109911.2 NaN 8366 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11036 52.379 NaN 209050 35 0 13274 0.262 + 18047 MLSFMRVN 8 72 499.2510463396479 996.4875397460959 2 499.2505798339844 MULTI HCD FTMS 0 0 0 11028 25281.396484375 0.5764868053694909 3 -0.08551025390625 8 Unmodified _MLSFMRVN_ REV__ENST00000356757.6_1_6:37180235-37180745:-|nuORF;REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B 12.531546534597751 0.5015908124873912 1 {I|L}AEAN 5 -1 30.165 0 0 3.0271 0 0 480.239549705275 0 480.239549705275 0 22.96002544127475 0 0 0 0 0 0.4247425010840047 0 {I|L}AEAN 3.0271 - 88 NaN NaN 116150 NaN 8367 2667 11028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11038 52.384 NaN 1359800 35 0 282680 0.327 + 15482 LPDMVVSHL 9 99 513.7679631974995 1025.521373461799 2 513.7681274414062 MULTI HCD FTMS 0 0 0 11037 664389.75 0.41081786572064977 -10 0.2930870056152344 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 111.28704002717404 0.0027322905094575235 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 110.33 0 0 10.758 10.758 96.084 0 0 0 89.85985638199878 10.642492736872597 10.642492736872597 13.401369937434936 0 3.048455006504028 1.5228787452803376 1 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L};[DP]{M(Oxidation (M))|F}VV{I|L}SH{I|L};{[{M(Oxidation (M))|F}D]|MM}PVV{I|L}SH{I|L} 10.758;9.4514;6.9414;6.8918;6.1841;6.0896;5.403;5.3085;4.6219;4.5274 +;+;-;-;-;-;-;-;-;- + 1556 + NaN NaN 290487 NaN 8368 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11039 52.389 NaN 827680 35 0 220120 0.261 + 31368 VYADQPHIF 9 53 545.2720286556864 1088.5295043781728 2 545.2717895507812 MULTI HCD FTMS 0 0 0 11037 414760.4375 0.937301264576285 1 -0.02626800537109375 2 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 103.35351024395868 0.004027461563756449 1 VYADQPH{I|L}{M(Oxidation (M))|F} 9 0 + 104.73 0 0 9.6211 9.6211 95.568 0 0 0 82.51016889216956 6.7074145675533 6.7074145675533 13.878493940035455 0 2.6549471895720984 2 0.3807196863200844 0.6747425010840047 + + VYADQPH{I|L}{M(Oxidation (M))|F};VY[H{I|L}]QDAP{M(Oxidation (M))|F};VYAD[AG]PH{I|L}{M(Oxidation (M))|F};[YV]ADQ[H{I|L}]P{M(Oxidation (M))|F};VYADQ[H{I|L}]P{M(Oxidation (M))|F};[YV][H{I|L}]QDAP{M(Oxidation (M))|F};VY[H{I|L}][AG]DAP{M(Oxidation (M))|F};VYAD[AG][H{I|L}]P{M(Oxidation (M))|F};[YV]AD[AG][H{I|L}]P{M(Oxidation (M))|F};[YV][H{I|L}][AG]DAP{M(Oxidation (M))|F} 9.6211;8.3461;8.1553;8.0655;8.0368;7.7562;6.8516;6.571;6.571;6.2904 +;-;-;-;-;-;-;-;-;- + 576 + NaN NaN 218562.1 NaN 8369 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11040 52.392 NaN 606820 35 0 125720 0.261 -1 GDFRYTTTMG 10 81 582.7515389352 1163.4885249371998 2 582.7698364257812 MULTI HCD FTMS 0 0 0 11037 10095.373046875 0.18078888931482792 -7 0.20751953125 3 Oxidation (M) _GDFRYTTTM(Oxidation (M))G_ ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R 8.745405648335112 0.42901288225909884 1 P{M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 37.457 0 0 3.2194 0 0 222.06110902098732 0 222.06110902098732 0 10.044321917401081 0 0 0 0.25 0 0.75 0 P{M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 3.2194 - 595 + NaN NaN 177855.6 NaN 8370 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11041 52.396 NaN 291830 35 0 49108 0.262 + 18004 MLHVLFVL 8 59 486.2922195764572 970.5698862197145 2 486.77935791015625 MULTI HCD FTMS 0 0 0 11037 14269.3271484375 0.4460153459311781 -2 0.06247711181640625 4 Unmodified _MLHVLFVL_ REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF 17.086550045450526 0.4680768486079041 1 P{I|L}NPK 5 -1 31.454 0 0 3.2407 0 0 403.2368336408219 0 403.2368336408219 0 7.443868066579711 0 0 0 0 0 0 0 P{I|L}NPK 3.2407 - 125 NaN NaN 127656.1 NaN 8371 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11042 52.399 NaN 154560 35 0 13438 0.261 + 4438 EYGPECQYII 10 59 607.773921254685 1213.5332895761699 2 607.7736206054688 MULTI HCD FTMS 0 0 0 11037 64619.53515625 0.8603741321287354 1 -0.02626800537109375 5 Unmodified _EYGPECQYII_ REV__ENSG00000165124|ENST00000374469|SVEP1;REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1 19.361941925380144 0.3300069447713393 1 {I|L}{I|L} 2 -1 21.454 0 0 1.7679 0 0 969.355889314881 0 969.355889314881 0 6.559100297186966 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.7679 + + 61 NaN NaN 115720.4 NaN 8372 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11043 52.402 NaN 302290 35 0 37120 0.261 -1 MISKLKQAC 9 69 547.7878325408293 1093.5611121484585 2 548.7877197265625 MULTI HCD FTMS 0 0 0 11037 120561.8671875 0.21827231464238117 -5 0.14827728271484375 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))ISKLKQAC(Carbamidomethyl (C))_ ENSG00000055130|ENST00000325222|CUL1 7.910154910731844 0.2910521888787154 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]Q{M(Oxidation (M))|F}DV 8 -1 47.788 0 0 4.37 0 0 0 126.07441733165332 126.07441733165332 37.6108268422127 0 0 0 0 0 1.3979400086720375 1.0044321917401078 0.6139829889124311 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]Q{M(Oxidation (M))|F}DV 4.37 - 182 NaN NaN 121878 NaN 8373 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11044 52.406 NaN 158910 35 0 29214 0.261 + -1 MHLHTMMAQL 10 63 622.7815823976053 1243.5486118620106 2 622.7798461914062 MULTI HCD FTMS 0 0 0 11037 48092.8828125 0.6856534999366238 -4 0.1253509521484375 7 2 Oxidation (M) _MHLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 16.149105407346934 0.3600587335443843 1 {I|L}AQ{I|L} 4 -1 38.047 0 0 3.0596 0 0 800.2757435529312 0 800.2757435529312 0 33.44335023848103 0 0 0 0.4247425010840047 0 0 0.4247425010840047 {I|L}AQ{I|L} 3.0596 - 20 NaN NaN 104645.1 NaN 8374 2668 11037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11046 52.41 NaN 1616000 35 0 108430 0.327 + 6663 FPNAIEHTL 9 107 521.2716177525932 1040.5286825719863 2 521.2718505859375 MULTI HCD FTMS 0 0 0 11045 838027.75 0.5129298964189819 5 -0.1279449462890625 1 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 145.12958885780327 1.3974915176135797E-05 1 {I|L}MNA{I|L}EH 7 4 91.341 0 0 8.7783 0 0 0 229.11940942935783 229.11940942935783 24.900115021927306 0 0 0 0 2.5356668758921828 1.6989700043360187 2.4247425010840047 0 {I|L}MNA{I|L}EH 8.7783 - 2268 + NaN NaN 330918.2 NaN 8375 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11047 52.415 NaN 223340 35 0 20431 0.261 -1 TPMFREYSL 9 64 580.2762161476448 1158.5378793620896 2 580.2764892578125 MULTI HCD FTMS 0 0 0 11045 122136.9296875 0.8114476333653029 2 -0.06917953491210938 2 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 35.61225514009592 0.08548698421724198 1 TP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 41.146 0 0 3.5516 0 0 0 663.3128145807249 663.3128145807249 -0.6196092369567197 0 -0.6196092369567197 0 0 0 1.5228787452803376 0 0 TP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.5516 + + 106 + NaN NaN 128930.2 NaN 8376 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11048 52.419 NaN 94010 35 0 14545 0.261 -1 MPQSMPEYAL 10 38 599.7594141413936 1197.504275349587 2 599.759033203125 MULTI HCD FTMS 0 0 0 11045 32874.1875 0.2877119680402085 10 -0.2857398986816406 3 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 7.101721422024254 0.4377131641736035 1 YA{I|L} 3 -1 30.445 0 0 2.5424 0 0 832.3101673810562 0 832.3101673810562 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 YA{I|L} 2.5424 + + 4 NaN NaN 109554.5 NaN 8377 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11049 52.422 NaN 186570 35 0 27252 0.261 + -1 MHLHTMMAQL 10 55 622.7815823976053 1243.5486118620106 2 622.7825317382812 MULTI HCD FTMS 0 0 0 11045 42713.67578125 0.6089628980810489 -3 0.0887451171875 4 2 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))MAQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 12.240655878213236 0.39661705172222156 1 {I|L}AQ{I|L} 4 -1 39.68 0 0 3.1909 0 0 800.2795277326187 0 800.2795277326187 0 33.42141542771227 0 0 0 0.9247425010840047 0 0 0 {I|L}AQ{I|L} 3.1909 - 38 NaN NaN 116473 NaN 8378 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11050 52.425 NaN 278760 35 0 83761 0.264 + 3628 ELDNHSSAMQI 11 46 415.5237789405733 1243.54950742192 3 415.52490234375 MULTI HCD FTMS 0 0 0 11045 25515.08984375 0.7000673609254116 -2 0.055858612060546875 5 Unmodified _ELDNHSSAMQI_ ENSG00000110422|ENST00000303296|HIPK3;nc|ENSG00000110422|Q9H422-2|HIPK3 4.5288652416199255 0.3990586020344083 1 Q{I|L} 2 9 24.464 0 0 1.9673 0 0 984.4001816062766 0 984.4001816062766 0 8.89075625191822 0 0 0 0.5 0 0 0 + Q{I|L} 1.9673 + + 14 NaN NaN 122425.9 NaN 8379 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11051 52.429 NaN 40601 35 0 7646.2 0.261 + 10607 IPNPQERTLTL 11 19 641.3618472699594 1280.7091416067187 2 641.361572265625 MULTI HCD FTMS 0 0 0 11045 27969.8828125 0.024823043826456732 16 -0.4498100280761719 6 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 2.282774691075616 0.408909192180357 1 {I|L} 1 10 3.0989 0 0 0.24197 0 0 658.3813350655063 506.2355135553344 1164.6168486208408 0 0 0 0 0 0 0 0 0 + {I|L} 0.24197 + + 5 + NaN NaN 90556.5 NaN 8380 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11052 52.432 NaN 115000 35 0 7870.9 0.261 -1 TYMKDLYQL 9 58 595.7913264559885 1189.568099978777 2 595.7921142578125 MULTI HCD FTMS 0 0 0 11045 20352.232421875 0.95968241636026 -1 0.02626800537109375 7 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 9.38312468134398 0.279288223203164 1 V[YQ]{I|L} 4 -1 7.7917 0 0 0.655 0 0 668.3043690412125 0 668.3043690412125 0 0.8019813526458144 0 0 0 0 0 0 0 V[YQ]{I|L} 0.655 - 13 NaN NaN 97407.2 NaN 8381 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11053 52.435 NaN 26248 35 0 4709.6 0.261 + -1 GWWPGCRWV 9 16 602.2797241210938 NaN 0 602.2797241210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _GWWPGC(Carbamidomethyl (C))RWV_ REV__ENST00000524856.1_1_11:65375623-65381302:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88855.2 NaN 8382 2669 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11055 52.44 NaN 678500 35 0 101710 0.327 -1 VMAPRTVLL 9 76 508.3021610373598 1014.5897691415196 2 508.30206298828125 MULTI HCD FTMS 0 0 0 11054 277868.125 0.5677350463368052 -5 0.14794158935546875 1 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 21.536976647645854 0.1742816388551942 1 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L} 9 -1 + 53.618 0 0 5.2847 5.2847 84.988 0 0 0 13.440899702813027 28.440899702813027 13.440899702813027 6.9897000433601875 0 1.3494850021680094 1.3979400086720375 0 0 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L};[{M(Oxidation (M))|F}V]A[RP][{I|L}T]{I|L}V;[{I|L}T]C[RP][{I|L}T]V{I|L};[{I|L}T]C[RP][{I|L}T]{I|L}V 5.2847;4.5958;2.3291;1.6401 -;-;-;- 81 NaN NaN 180110.1 NaN 8383 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11056 52.445 NaN 436860 35 0 60206 0.261 + 4279 EVKMDAEF 8 63 484.72320017509605 NaN 0 484.7068176269531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _EVKMDAEF_ ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP 32.116972079565 0.3772972708913157 1 S{M(Oxidation (M))|F} 2 7 13.711 0 0 1.4173 0 0 131.1305670339247 599.2125813302303 730.343148364155 0 0 0 0 0 0 0 0.4247425010840047 0 S{M(Oxidation (M))|F} 1.4173 - 64 + NaN NaN 156060.1 NaN 8384 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11057 52.448 NaN 384620 35 0 54479 0.261 -1 0 55 470.26856671483137 938.5225804964628 2 470.7585144042969 MULTI HCD FTMS 0 0 0 11054 13812.09375 0.16972885210383565 11 -0.3052330017089844 3 NaN NaN 1 AP{I|L}D[HT]{[VA]|[{I|L}G]} 8 -1 19.385 0 0 2.0655 0 0 116.09884446652275 0 116.09884446652275 0 3.9009251440877826 0 0 0 0 0 0 0 AP{I|L}D[HT]{[VA]|[{I|L}G]} 2.0655 - 112 + NaN NaN 139499.7 NaN 8385 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11058 52.451 NaN 152180 35 0 20330 0.261 + 527 APDAKSFVL 9 41 474.26314873479913 946.5117445363983 2 474.262939453125 MULTI HCD FTMS 0 0 0 11054 103056.71875 0.5260430229391073 6 -0.1573944091796875 4 Unmodified _APDAKSFVL_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF 37.07464296494664 0.07877380486334713 1 [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 9 0 + 44.587 0 0 4.7107 4.7107 82.849 0 0 0 3.65279269351241 23.61818737241734 3.65279269351241 4.247425010840047 0 1.6989700043360187 0 0.3494850021680094 0 + + [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]DKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 4.7107;4.262;3.8119;3.3632 +;-;-;- + 87 NaN NaN 105157.3 NaN 8386 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11059 52.455 NaN 730430 35 0 59093 0.261 + 5667 FPAAIEHTI 9 78 499.76894771070397 997.523342488208 2 499.7690124511719 MULTI HCD FTMS 0 0 0 11054 236977.265625 0.3357079437872534 -4 0.11839675903320312 5 Unmodified _FPAAIEHTI_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 125.62461146993168 0.0008703235425492373 1 {I|L}MAA{[QN]|[E{I|L}]|[KN]}H 7 4 71.067 0 0 7.1244 0 0 0 229.11922632388908 229.11922632388908 25.361300909143054 0 0 0 0 2.2302046884880937 1.6989700043360187 1.9247425010840047 0 {I|L}MAA{[QN]|[E{I|L}]|[KN]}H 7.1244 - 1002 + NaN NaN 193154.2 NaN 8387 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11060 52.458 NaN 352340 35 0 27610 0.261 + 12454 KQNENPEYF 9 67 584.7673554822737 1167.5201580313474 2 585.2850952148438 MULTI HCD FTMS 0 0 0 11054 19862.73828125 0.13488147188807603 -4 0.11839675903320312 6 Unmodified _KQNENPEYF_ REV__tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1 8.593279151180031 0.2858735984551981 1 {I|L}SV[C(Carbamidomethyl (C))R]EY{M(Oxidation (M))|F} 8 -1 43.155 0 0 3.6963 0 0 94.99698931446694 0 94.99698931446694 0 30.84752853788089 0 0 0 1 0 0.7059771852360797 0 {I|L}SV[C(Carbamidomethyl (C))R]EY{M(Oxidation (M))|F} 3.6963 - 116 + NaN NaN 136961.7 NaN 8388 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11061 52.461 NaN 1102100 35 0 231950 0.261 + 29954 VFHSPSSFQT 10 86 568.772343270362 1135.5301336075238 2 568.773681640625 MULTI HCD FTMS 0 0 0 11054 331490.6875 0.23423166763323802 -5 0.14794158935546875 7 Unmodified _VFHSPSSFQT_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 17.11289562659939 0.35104376501799556 1 [HA]SVSTS{M(Oxidation (M))|F} 8 6 85.227 0 0 7.5055 0 0 0 316.14133630924067 316.14133630924067 62.21610178238856 0 0 0 0 3.110924374808178 0 1.5356668758921828 0 [HA]SVSTS{M(Oxidation (M))|F} 7.5055 - 1032 + NaN NaN 258520.1 NaN 8389 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11062 52.465 NaN 242590 35 0 18236 0.261 + 14660 LGNHRSGRMS 10 56 557.7794636150969 1113.5443742969937 2 557.7811279296875 MULTI HCD FTMS 0 0 0 11054 66578.140625 0.0443714759517695 19 -0.5217628479003906 8 Unmodified _LGNHRSGRMS_ REV__ENSG00000029534|ENST00000289734|ANK1;REV__ENST00000524227.5_1_8:41525962-41555361:-|nuORF;REV__nc|ENSG00000029534|P16157-10|ANK1;REV__nc|ENSG00000029534|P16157-11|ANK1;REV__nc|ENSG00000029534|P16157-12|ANK1;REV__nc|ENSG00000029534|P16157-13|ANK1;REV__nc|ENSG00000029534|P16157-14|ANK1;REV__nc|ENSG00000029534|P16157-15|ANK1;REV__nc|ENSG00000029534|P16157-16|ANK1;REV__nc|ENSG00000029534|P16157-2|ANK1;REV__nc|ENSG00000029534|P16157-21|ANK1;REV__nc|ENSG00000029534|P16157-4|ANK1;REV__nc|ENSG00000029534|P16157-5|ANK1;REV__nc|ENSG00000029534|P16157-6|ANK1;REV__nc|ENSG00000029534|P16157-7|ANK1;REV__nc|ENSG00000029534|P16157-8|ANK1;REV__nc|ENSG00000029534|P16157-9|ANK1;REV__nc|ENSG00000029534|P16157|ANK1 13.90604991867851 0.3810395177745597 1 VTN{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 33.09 0 0 2.9716 0 0 563.3068104474625 0 563.3068104474625 0 19.90270483492408 0 0 0 1.25 0 0.28872548999643577 0.3494850021680094 VTN{[MS]|[{M(Oxidation (M))|F}A]} 2.9716 - 74 NaN NaN 128950.1 NaN 8390 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11063 52.468 NaN 121740 35 0 20280 0.263 -1 0 43 424.08158163941823 NaN 0 424.08160400390625 PEAK HCD FTMS 0 0 0 11054 95743.3359375 0.5929493435251337 204 -5.344184875488281 9 NaN NaN 1 Q 1 -1 2.7642 0 0 0.32668 0 0 276.9373199177052 438.13352380924067 715.0708437269459 0 0 0 0 0 0 0 0 0 Q 0.32668 - 2 + NaN NaN 99224.1 NaN 8391 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11064 52.471 NaN 113080 35 0 7877.7 0.261 + 57 AAYAEATSSL 10 48 492.23656165054877 982.4585703678976 2 492.236328125 MULTI HCD FTMS 0 0 0 11054 66997.5546875 0.9723226024728917 -1 0.029651641845703125 10 Unmodified _AAYAEATSSL_ sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1 25.399314129420986 0.2735354021946395 1 {I|L}S{I|L} 3 8 26.599 0 0 2.7074 0 0 651.2452259748062 0 651.2452259748062 0 9.14697116001868 0 0 0 0.5 0 0.3807196863200844 0 {I|L}S{I|L} 2.7074 - 44 NaN NaN 105487.7 NaN 8392 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11065 52.475 NaN 56955 35 0 4742.3 0.261 + 34175 YPDGNEGAIRF 11 38 619.7938817722211 1237.573210611242 2 619.7935791015625 MULTI HCD FTMS 0 0 0 11054 13449.7138671875 0.18677527568274346 11 -0.3052330017089844 11 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 3.876331618118854 0.4019203928379901 1 YP 2 9 20.969 0 0 1.6944 0 0 0 974.4350679986936 974.4350679986936 18.494850021680094 0 0 0 0 0 0 0 0 + YP 1.6944 + + 11 + NaN NaN 92984 NaN 8393 2670 11054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11067 52.48 NaN 253250 35 0 22326 0.327 + 9970 IEHGIITNW 9 60 541.785089033384 1081.555625133568 2 541.7850952148438 MULTI HCD FTMS 0 0 0 11066 139275.546875 0.05352932691291406 21 -0.5708999633789062 1 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 37.97399986684836 0.07464525285885698 1 VTNW 4 6 54.24 0 0 5.015 0 0 563.3070545880875 0 563.3070545880875 0 41.28144697160131 0 0 0 1.4247425010840047 0 0.805462187404089 0 VTNW 5.015 - 147 NaN NaN 122025.1 NaN 8394 2671 11066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11068 52.484 NaN 463300 35 0 68856 0.261 + -1 PLRPHCLQRW 10 63 454.9140164532509 NaN 0 454.9139404296875 PEAK HCD FTMS 0 0 0 11066 131254.765625 0.9366356644084903 -1 0.03952789306640625 2 Carbamidomethyl (C) _PLRPHC(Carbamidomethyl (C))LQRW_ REV__ENST00000552897.5_1_12:113659258-113698227:+|nuORF 8.444304893310646 0.3329571343918231 1 AG{I|L}R 4 -1 21.938 0 0 2.4166 0 0 306.480600288076 201.0671785943969 507.5477788824729 0 0 0 0 0 0 0 0 0 AG{I|L}R 2.4166 - 51 + NaN NaN 160656.4 NaN 8395 2671 11066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11069 52.488 NaN 150580 35 0 22083 0.261 -1 HAVIQEYML 9 62 560.2786811148007 1118.5428092964014 2 560.2784423828125 MULTI HCD FTMS 0 0 0 11066 51718.5625 0.09064416302600779 43 -1.08392333984375 3 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 4 -1 37.423 0 0 3.3457 0 0 530.2944813459 0 530.2944813459 0 31.736387966791284 0 0 0 1 0 0 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 3.3457 - 62 NaN NaN 107071 NaN 8396 2671 11066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11071 52.493 NaN 700830 35 0 142850 0.327 + 43 AATEQEISL 9 58 481.2457628414039 960.4769727496079 2 481.2455139160156 MULTI HCD FTMS 0 0 0 11070 481466.75 0.917376142095468 2 -0.04581451416015625 1 Unmodified _AATEQEISL_ BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3 59.368380827593164 0.01846506874148156 1 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L} 9 4 + 83.439 0 0 8.6872 8.6872 93.416 0 0 0 18.445984148897807 70.9746368720289 18.445984148897807 9.688105454342804 0 1.9247425010840047 1.5228787452803376 1.2302046884880937 0.3807196863200844 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L};{[TV]|[{I|L}S]}[NG]EE{I|L}S{I|L};{[TV]|[{I|L}S]}[DG][AG]E{I|L}S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EQE{I|L}S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E[AG]E{I|L}S{I|L} 8.6872;7.6785;7.3321;5.4777;4.5134 -;-;-;-;- 148 NaN NaN 186529.5 NaN 8397 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11072 52.497 NaN 977380 35 0 221460 0.261 + 30018 VFPEKGYSF 9 63 537.2690392578539 1072.5235255825078 2 537.2687377929688 MULTI HCD FTMS 0 0 0 11070 368955.09375 0.4999166704139575 12 -0.3314628601074219 2 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 31.26834338654808 0.10542797264966089 1 WS{M(Oxidation (M))|F} 3 7 24.926 0 0 2.3241 0 0 634.3488026349625 0 634.3488026349625 0 7.474001911758684 0 0 0 0.7134679910804405 0 0 0 WS{M(Oxidation (M))|F} 2.3241 - 71 NaN NaN 233640.9 NaN 8398 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11073 52.501 NaN 486570 35 0 124860 0.261 + -1 EMLDCLLEM 9 64 593.245400848901 1184.476248764602 2 593.2454833984375 MULTI HCD FTMS 0 0 0 11070 282696.65625 0.34648980350995134 6 -0.1640777587890625 3 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 1 {I|L}V{I|L}DE 5 -1 80.943 0 0 6.8337 0 0 0 612.1456392877561 612.1456392877561 44.71340305007878 0 0 0 0 1.8494850021680094 1.6989700043360187 0.75 0 {I|L}V{I|L}DE 6.8337 - 73 + NaN NaN 169311.6 NaN 8399 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11074 52.504 NaN 485510 35 0 55683 0.261 -1 IPHMDIEAL 9 67 527.7666675310228 1053.5187821288455 2 527.7655029296875 MULTI HCD FTMS 0 0 0 11070 222096.546875 0.44535750879157987 14 -0.3939170837402344 4 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 32.30548876998284 0.10066689432505688 1 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 7 -1 50.463 0 0 4.79 0 0 202.13173110175939 0 202.13173110175939 0 30.99948217190132 0 0 0 0.9247425010840047 0 1.25 0 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 4.79 - 116 NaN NaN 153602.2 NaN 8400 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11075 52.507 NaN 165960 35 0 8332.6 0.261 -1 YPDRIMNTF 9 67 586.7737018509798 1171.5328507687595 2 586.7738037109375 MULTI HCD FTMS 0 0 0 11070 73563.1875 0.01837225811829251 149 -3.8541488647460938 5 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 13.614867670302875 0.2427269026982664 1 V{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}T] 5 -1 23.724 0 0 2.025 0 0 545.2571888654312 0 545.2571888654312 0 7.269987279362624 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}T] 2.025 - 138 NaN NaN 117872.4 NaN 8401 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11076 52.511 NaN 181360 35 0 16028 0.261 + 20899 PKERMHVMS 9 54 557.7794636150969 1113.5443742969937 2 557.7808227539062 MULTI HCD FTMS 0 0 0 11070 56142.8203125 0.037416782414995686 21 -0.5808868408203125 6 Unmodified _PKERMHVMS_ REV__ENSG00000256294|ENST00000262894|ZNF225 15.847184025352803 0.2234401846867398 1 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 39.495 0 0 3.5468 0 0 662.3740986737942 0 662.3740986737942 0 23.70243153826514 0 0 0 1.274227503252014 0 0.7059771852360797 0.3494850021680094 TN{[MS]|[{M(Oxidation (M))|F}A]} 3.5468 - 133 NaN NaN 104790.3 NaN 8402 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11077 52.514 NaN 276500 35 0 36458 0.261 + 24383 RYIPTAAAF 9 66 505.276884993559 1008.539217053918 2 505.2769775390625 MULTI HCD FTMS 0 0 0 11070 68569.390625 0.009526999199221994 64 -1.6876983642578125 7 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 1 AA{M(Oxidation (M))|F} 3 6 33.06 0 0 3.278 0 0 701.3851795880875 0 701.3851795880875 0 21.14848121939808 0 0 0 0.9247425010840047 0 0 0 + AA{M(Oxidation (M))|F} 3.278 + + 64 NaN NaN 136282.2 NaN 8403 2672 11070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11079 52.519 NaN 2371100 35 0 508870 0.327 + 15483 LPDMVVSHL 9 103 513.7679631974995 1025.521373461799 2 513.7681274414062 MULTI HCD FTMS 0 0 0 11078 1194558.75 0.7386418531485882 -5 0.13459396362304688 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 136.33342141710068 0.00022087650154924235 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 116.45 0 0 11.355 11.355 96.835 0 0 0 76.78329969718914 10.642492736872597 10.642492736872597 16.46128035678238 0 2.885151878060192 1.6989700043360187 1.5994850021680094 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}PD{M(Oxidation (M))|F}VVHS{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};[{I|L}P]T[MD]{I|L}SH{I|L} 11.355;9.7501;8.9291;6.9676;6.663;6.0771;6.0771;6.0428;6.0428;6.0229 +;-;+;-;-;-;-;-;-;- + 3373 + NaN NaN 443595.4 NaN 8404 2673 11078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11080 52.523 NaN 285120 35 0 87962 0.261 + 8110 GLFSYDSL 8 60 451.2185745983795 NaN 0 451.2325744628906 PEAK HCD FTMS 0 0 0 11078 5226.64599609375 0.2327904412343577 -4 0.10832595825195312 2 Unmodified _GLFSYDSL_ ENSG00000152527|ENST00000282406|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;nc|ENSG00000152527|Q8IVE3-3|PLEKHH2 2.8892196856762586 0.38822285293237185 1 W 1 8 2.4743 0 0 0.27479 0 0 583.2479269293779 128.0715731256469 711.3195000550247 0 0 0 0 0 0 0 0 0 W 0.27479 - 3 + NaN NaN 130830.9 NaN 8405 2673 11078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11081 52.527 NaN 166770 35 0 26616 0.261 + 8686 HFSYNWTF 8 57 551.2419990698304 1100.4694452064607 2 551.2420043945312 MULTI HCD FTMS 0 0 0 11078 53192.7421875 0.6980279066772892 -2 0.03914642333984375 3 Unmodified _HFSYNWTF_ ENSG00000119899|ENST00000355773|SLC17A5 16.942295170755138 0.46913822049235215 1 T{M(Oxidation (M))|F} 2 6 35.217 0 0 3.2001 0 0 834.3436459022955 0 834.3436459022955 0 21.237125054200234 0 0 0 1 0 0.4247425010840047 0 + T{M(Oxidation (M))|F} 3.2001 + + 32 NaN NaN 105774.9 NaN 8406 2673 11078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11082 52.53 NaN 70608 35 0 8597.3 0.261 + 7853 FYSRLLQKF 9 44 601.3401837977694 1200.6658146623388 2 601.3407592773438 MULTI HCD FTMS 0 0 0 11078 31939.4453125 1 0 0 4 Unmodified _FYSRLLQKF_ ENSG00000174442|ENST00000307897|ZWILCH 5.731851221503515 0.3075653528928475 1 [RH]Q 3 7 10.458 0 0 0.87098 0 0 0 776.4101046197874 776.4101046197874 4.9730248405664685 0 0 0 0 0 0 0 0 [RH]Q 0.87098 - 4 + NaN NaN 97211.9 NaN 8407 2673 11078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11083 52.533 NaN 97516 35 0 6276 0.264 + 3276 EEEESFADDLH 11 43 440.84569395015916 1319.5152524506775 3 440.84552001953125 MULTI HCD FTMS 0 0 0 11078 24861.978515625 0.3592532570709431 6 -0.1774139404296875 5 Unmodified _EEEESFADDLH_ REV__ENSG00000204186|ENST00000374423|ZDBF2 1.3296431237094175 0.4130893034510334 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.52972 0 0 387.1299838324488 782.2968626411423 1169.426846473591 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.52972 + + 7 + NaN NaN 95948.8 NaN 8408 2673 11078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11085 52.538 NaN 1085500 35 0 109140 0.327 + 29209 TYLDKVENI 9 100 547.7878325408293 1093.5611121484585 2 548.7874755859375 MULTI HCD FTMS 0 0 0 11084 498257.25 0.9020743107412947 1 -0.0361480712890625 1 Unmodified _TYLDKVENI_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 27.628801355627647 0.12213550946336599 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KQ]{M(Oxidation (M))|F}DV 8 7 53.738 0 0 4.9141 0 0 0 126.07285212278408 126.07285212278408 -3.807555843599147 0 -3.807555843599147 0 0 0 1.3010299956639813 1.079689690656103 0.7535311606729016 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KQ]{M(Oxidation (M))|F}DV 4.9141 - 4848 NaN NaN 251051.5 NaN 8409 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11086 52.543 NaN 665180 35 0 40331 0.261 + -1 MLHHHHLT 8 86 521.2580923985274 NaN 0 521.2717895507812 PEAK HCD FTMS 0 0 0 11084 20029.75 0.9370219457361898 -3 0.058765411376953125 2 Oxidation (M) _M(Oxidation (M))LHHHHLT_ REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF 32.116972079565 0.3772972708913157 1 PNA{I|L}EH 6 -1 33.682 0 0 3.2371 0 0 147.03674526974743 229.11956201724846 376.1563072869959 0 0 0 0 0 0 0 2.3494850021680094 0 PNA{I|L}EH 3.2371 - 436 + NaN NaN 177416.5 NaN 8410 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11087 52.546 NaN 710210 35 0 116530 0.261 + 19732 NYATRIVTL 9 79 525.8007383729025 1049.586923812605 2 525.8007202148438 MULTI HCD FTMS 0 0 0 11084 315898.4375 0.9032508542181937 -1 0.019618988037109375 3 Unmodified _NYATRIVTL_ BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 121.34585337138759 0.001129813327125052 1 [YN]ATR{I|L}VT{I|L} 9 0 + 103.33 0 0 9.8448 9.8448 98.942 0 0 0 11.822333069283658 11.822333069283658 11.822333069283658 66.53486796748322 0 2.6989700043360187 1.6989700043360187 0.6307196863200843 1.0189301784845295 + + [YN]ATR{I|L}VT{I|L};[{I|L}T]V{[QG]|[NA]}[YR]T{I|L};{[TV]|[{I|L}S]}{I|L}{[QG]|[NA]}[YR]T{I|L} 9.8448;3.5056;2.3584 +;-;- + 352 NaN NaN 197000.8 NaN 8411 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11088 52.55 NaN 914180 35 0 108690 0.261 + 8046 GHDFIGEFQT 10 97 575.7618420794302 1149.5091312256602 2 575.7618408203125 MULTI HCD FTMS 0 0 0 11084 276577.625 0.8765091845711525 -1 0.019618988037109375 4 Unmodified _GHDFIGEFQT_ CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant;ENSG00000140848|ENST00000290776|CPNE2;nc|ENSG00000140848|Q96FN4-2|CPNE2 8.745405648335112 0.42901288225909884 1 [HA]SVSN 6 9 53.263 0 0 4.6335 0 0 0 551.2433565729124 551.2433565729124 40.07515625508539 0 0 0 0 1.9247425010840047 0 1.0994850021680094 0 [HA]SVSN 4.6335 - 837 + NaN NaN 221816.8 NaN 8412 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11089 52.553 NaN 636160 35 0 109840 0.261 -1 GDFRYTTTMG 10 77 582.7515389352 1163.4885249371998 2 582.7697143554688 MULTI HCD FTMS 0 0 0 11084 54212.29296875 0.9708388375072716 -1 0.019618988037109375 5 Oxidation (M) _GDFRYTTTM(Oxidation (M))G_ ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R 8.745405648335112 0.42901288225909884 1 CASV[YR]VT{[CT]|[{M(Oxidation (M))|F}G]} 10 -1 45.724 0 0 3.9299 0 0 61.998495881551044 0 61.998495881551044 0 37.30713133096572 0 0 0 0.4247425010840047 0 1.3851518780601921 0 CASV[YR]VT{[CT]|[{M(Oxidation (M))|F}G]} 3.9299 - 1304 + NaN NaN 194772.1 NaN 8413 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11090 52.556 NaN 368490 35 0 68761 0.261 + 31369 VYADQPHIF 9 71 545.2720286556864 1088.5295043781728 2 545.27197265625 MULTI HCD FTMS 0 0 0 11084 177253.5625 0.4005685529780106 7 -0.206939697265625 6 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 82.5293158979368 0.005033931517079822 1 VY[H{I|L}]QDPA{M(Oxidation (M))|F} 9 5 + 100.4 0 0 9.2232 9.2232 88.375 0 0 0 15.969100130080562 15.969100130080562 15.969100130080562 0.22878745280337398 0 2.5 1.6989700043360187 0.2302046884880938 0.3252574989159953 VY[H{I|L}]QDPA{M(Oxidation (M))|F};VY[H{I|L}]QDAP{M(Oxidation (M))|F};VYADQ[H{I|L}]P{M(Oxidation (M))|F};VYADQPH{I|L}{M(Oxidation (M))|F};VY[H{I|L}][AG]DPA{M(Oxidation (M))|F};VY[H{I|L}][AG]DAP{M(Oxidation (M))|F};VY[H{I|L}]DQPA{M(Oxidation (M))|F};VY[H{I|L}]DQAP{M(Oxidation (M))|F};VYAD[AG][H{I|L}]P{M(Oxidation (M))|F};[YV]ADQ[H{I|L}]P{M(Oxidation (M))|F} 9.2232;9.2022;8.9216;8.8278;8.0785;8.0575;7.8873;7.8663;7.846;7.7562 -;-;-;+;-;-;-;-;-;- + 1132 + NaN NaN 138025.3 NaN 8414 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11091 52.56 NaN 182200 35 0 34807 0.261 + 19280 NLPTTIISI 9 54 486.2922195764572 970.5698862197145 2 486.779296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NLPTTIISI_ tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1 14.838274106304384 0.23215694253501695 1 {I|L}NPK 4 8 32.18 0 0 3.3156 0 0 500.2958086721486 0 500.2958086721486 0 8.293037728310253 0 0 0 0 0 0 0.3252574989159953 {I|L}NPK 3.3156 - 173 NaN NaN 101958.5 NaN 8415 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11092 52.563 NaN 109720 35 0 13822 0.261 -1 YANVACAQLGF 11 47 607.2861696717823 1212.5577864103645 2 607.287109375 MULTI HCD FTMS 0 0 0 11084 49942.44921875 0.7579796366516556 13 -0.374267578125 8 Carbamidomethyl (C) _YANVAC(Carbamidomethyl (C))AQLGF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 12.240655878213236 0.35042917576941135 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 3 -1 36.254 0 0 2.9899 0 0 0 861.3930274594458 861.3930274594458 29.26477176880759 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 2.9899 + + 20 NaN NaN 121824.3 NaN 8416 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11093 52.566 NaN 137490 35 0 7855 0.261 + 11379 IYNSFHKLR 9 59 589.3269344617403 1176.6393159902805 2 589.3278198242188 MULTI HCD FTMS 0 0 0 11084 25841.486328125 0.15030057978029293 7 -0.206939697265625 9 Unmodified _IYNSFHKLR_ ENSG00000106266|ENST00000222990|SNX8 10.073929032068715 0.27331982688540024 1 [Y{I|L}]N 3 6 38.952 0 0 3.3105 0 0 0 783.4276217096311 783.4276217096311 20.170426551228108 0 0 0 0 0.8494850021680094 2 0 0 + [Y{I|L}]N 3.3105 + + 61 + NaN NaN 111400.3 NaN 8417 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11094 52.57 NaN 97594 35 0 5816 0.261 -1 MVSDEYEQL 9 56 565.2396314481397 1128.4647099630793 2 565.2401123046875 MULTI HCD FTMS 0 0 0 11084 34861.63671875 0.02885864828393888 47 -1.2119483947753906 10 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 9.38312468134398 0.279288223203164 1 YEQ{I|L} 4 -1 34.553 0 0 3.0619 0 0 577.205858299025 0 577.205858299025 0 23.85151878060192 0 0 0 0.5 0 0 0 YEQ{I|L} 3.0619 + + 17 NaN NaN 99953.1 NaN 8418 2674 11084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11096 52.575 NaN 599810 35 0 111610 0.327 + -1 FSSDFRTTMG 10 72 582.7515389352 1163.4885249371998 2 582.7698974609375 MULTI HCD FTMS 0 0 0 11095 55840.671875 1 0 0 1 Oxidation (M) _FSSDFRTTM(Oxidation (M))G_ REV__ZNF22|p.I37T|1|0.2|ENSG00000165512|chr10:45003478-45003478|T/C|missense_variant 9.38312468134398 0.42334543440173333 1 SVSTS{M(Oxidation (M))|F}P{[CT]|[{M(Oxidation (M))|F}G]} 9 -1 36.59 0 0 3.1449 0 0 236.0795155255875 0 236.0795155255875 0 -4.841284356197228 -4.841284356197228 0 0 0.5 0 0.3252574989159953 0 SVSTS{M(Oxidation (M))|F}P{[CT]|[{M(Oxidation (M))|F}G]} 3.1449 - 722 NaN NaN 185192.3 NaN 8419 2675 11095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11097 52.579 NaN 442900 35 0 70354 0.261 + 9648 HVAYDSTVNY 10 75 584.7673554822737 1167.5201580313474 2 584.7670288085938 MULTI HCD FTMS 0 0 0 11095 254392.3125 1 0 0 2 Unmodified _HVAYDSTVNY_ REV__ENSG00000052126|ENST00000429027|PLEKHA5;REV__ENST00000539256.5_1_12:19282733-19418734:+|nuORF;REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0|PLEKHA5 13.90604991867851 0.3810395177745597 1 [HA]SVSH 6 -1 55.08 0 0 4.7177 0 0 0 546.2269991510374 546.2269991510374 39.90295303156586 0 0 0 0 1.8807196863200843 0 1.024227503252014 0 [HA]SVSH 4.7177 - 447 + NaN NaN 146385.9 NaN 8420 2675 11095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11098 52.583 NaN 308380 35 0 36232 0.264 -1 SYCYECTARF 10 69 433.8421898548713 1298.504740164814 3 433.8425598144531 MULTI HCD FTMS 0 0 0 11095 86144.4921875 0.749024786471967 -1 0.0361480712890625 3 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))YECTARF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 7.477065608646677 0.43572640772348226 1 SY[DN]{I|L}Y 6 -1 61.031 0 0 4.7001 0 0 0 540.1707356848393 540.1707356848393 48.556518697048716 0 0 0 0 1.2614393726401687 2 0 0 SY[DN]{I|L}Y 4.7001 - 72 + NaN NaN 134666.9 NaN 8421 2675 11095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11099 52.586 NaN 132490 35 0 17354 0.261 + 14452 LESRSHHLLGL 11 44 421.23804345481625 NaN 0 421.2241516113281 PEAK HCD FTMS 0 0 0 11095 3536.032958984375 0.24859120805351156 1 -0.022953033447265625 4 Unmodified _LESRSHHLLGL_ ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2 7.477065608646677 0.3209098616188029 1 A 1 11 5.4846 0 0 0.65256 0 0 227.1546603804706 539.2474459283811 766.4021063088517 0 0 0 0 0 0 0 0 0 A 0.65256 - 21 + NaN NaN 105828.2 NaN 8422 2675 11095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11100 52.589 NaN 207550 35 0 34133 0.261 + 10004 IEQKNINKIF 10 54 416.2434373325901 1245.7084825979703 3 416.2431945800781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IEQKNINKIF_ REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 3.072263186857199 0.4590417271953214 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1724 0 0 1080.6293332833202 0 1080.6293332833202 0 0.5803717656404217 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1724 + + 37 + NaN NaN 106430.9 NaN 8423 2675 11095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11101 52.593 NaN 75467 35 0 11361 0.261 + 16953 LYHNPCKL 8 43 494.2588154303898 986.5030779275796 2 494.25830078125 MULTI HCD FTMS 0 0 0 11095 11966.8359375 0.285707624176559 3 -0.08211517333984375 6 Unmodified _LYHNPCKL_ REV__ENSG00000164118|ENST00000503780|CEP44 9.347437153973935 0.5250182646323369 1 [Y{I|L}][HN]A{I|L} 6 -1 29.666 0 0 3.0072 0 0 0 272.1088267891609 272.1088267891609 4.449237304209888 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}][HN]A{I|L} 3.0072 - 26 NaN NaN 92781.4 NaN 8424 2675 11095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11103 52.597 NaN 2143400 35 0 474310 0.327 + 29955 VFHSPSSFQT 10 106 568.772343270362 1135.5301336075238 2 568.772216796875 MULTI HCD FTMS 0 0 0 11102 1363087.25 0.9631588811890965 1 -0.03955078125 1 Unmodified _VFHSPSSFQT_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 22.736283301280096 0.29844449404982915 1 [YR]{M(Oxidation (M))|F}STSVS 8 8 93.242 0 0 8.2113 0 0 0 205.06172875882774 205.06172875882774 47.0265958983215 0 0 0 0 3.1237125054200234 1 1.5629529932484498 0 [YR]{M(Oxidation (M))|F}STSVS 8.2113 - 4467 NaN NaN 422485.2 NaN 8425 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11104 52.602 NaN 1004200 35 0 84162 0.261 + 5668 FPAAIEHTI 9 87 499.76894771070397 997.523342488208 2 499.76898193359375 MULTI HCD FTMS 0 0 0 11102 466913.4375 0.6614412974019361 2 -0.059162139892578125 2 Unmodified _FPAAIEHTI_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 139.54400939418784 2.61670173137287E-05 1 {I|L}MAA{[QN]|[E{I|L}]|[KN]}H 7 4 74.377 0 0 7.4561 0 0 0 229.11943994693596 229.11943994693596 9.335065145321224 0 0 0 0 2.2059771852360797 1.6989700043360187 1.8807196863200843 0.2742275032520141 {I|L}MAA{[QN]|[E{I|L}]|[KN]}H 7.4561 - 1350 + NaN NaN 233755.4 NaN 8426 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11105 52.606 NaN 896300 35 0 132200 0.261 -1 VMAPRTVLL 9 80 508.3021610373598 1014.5897691415196 2 508.3021240234375 MULTI HCD FTMS 0 0 0 11102 434214.9375 0.8871799802935133 1 -0.03955078125 3 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 24.990960013464015 0.14443998892849796 1 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L} 9 -1 + 56.348 0 0 5.5538 5.5538 85.043 0 0 0 17.147642715192504 21.1219583558281 17.147642715192504 6.020599913279625 0 1.3494850021680094 1 0 0 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L};[{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}V;[{M(Oxidation (M))|F}V]A[RP]V[{I|L}T]{I|L};[{I|L}T]C[RP]T{I|L}V{I|L};[{I|L}T]C[RP]T{I|L}{I|L}V;[{I|L}V]TWWVV{I|L};[{I|L}V]TWWV{I|L}V;[{I|L}T]C[RP]V[{I|L}T]{I|L};[{I|L}T]VWWVV{I|L};[{I|L}T]VWWV{I|L}V 5.5538;4.9604;3.7069;3.3527;2.7593;2.1557;1.5623;1.5058;1.2314;0.63798 -;-;-;-;-;-;-;-;-;- 175 NaN NaN 230227.3 NaN 8427 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11106 52.609 NaN 434500 35 0 79359 0.261 + 29685 VCHFTSSPSPA 11 71 566.7584639938195 1131.502375054439 2 566.7567138671875 MULTI HCD FTMS 0 0 0 11102 244777.484375 0.8980433406304538 1 -0.03955078125 4 Unmodified _VCHFTSSPSPA_ ENST00000526600.1_1_11:12963940-12964069:+|nuORF 17.11289562659939 0.30797719109864646 1 VSSTS 5 7 45.222 0 0 3.9966 0 0 0 667.2632540338499 667.2632540338499 17.798859261803983 0 0 0 0 0.5 0 1.305462187404089 0 VSSTS 3.9966 - 173 + NaN NaN 148825.6 NaN 8428 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11107 52.612 NaN 304700 35 0 39362 0.262 + 9886 IANQDPIAV 9 52 470.75861894803825 939.5026849628765 2 470.7586364746094 MULTI HCD FTMS 0 0 0 11102 180080.796875 0.5924119655469621 3 -0.09869384765625 5 Unmodified _IANQDPIAV_ ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-2|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-7|NRG1 18.1463463914782 0.20357593197100715 1 D[{I|L}P]AV 5 4 29.833 0 0 3.1754 0 0 426.22322280097814 0 426.22322280097814 0 8.863781092484686 0 0 0 1 0 0 0 + D[{I|L}P]AV 3.1754 + + 24 NaN NaN 152230.6 NaN 8429 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11108 52.616 NaN 284360 35 0 38136 0.261 + 4280 EVKMDAEF 8 50 484.72320017509605 NaN 0 484.706787109375 PEAK HCD FTMS 0 0 0 11102 20398.126953125 0.7556190071026664 17 -0.4759712219238281 6 Unmodified _EVKMDAEF_ ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP 24.67388899826682 0.38182156912090326 1 SM{[{M(Oxidation (M))|F}D]|MM}K 5 6 15.802 0 0 1.6334 0 0 131.13030795762296 225.05152307681877 356.18183103444176 0 0 0 0 0 0 0 0.805462187404089 0.3054621874040891 SM{[{M(Oxidation (M))|F}D]|MM}K 1.6334 - 59 + NaN NaN 134997.3 NaN 8430 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11109 52.619 NaN 404790 35 0 44499 0.261 + 9798 HYLYQIAHL 9 62 579.3086753728791 1156.602797812558 2 579.3088989257812 MULTI HCD FTMS 0 0 0 11102 161539.296875 0.5864590303498135 -5 0.11786651611328125 7 Unmodified _HYLYQIAHL_ ENSG00000189091|ENST00000302516|SF3B3 64.23631603340823 0.01165516075559909 1 HY{I|L}[YQ]{I|L}AH{I|L} 9 0 + 69.548 0 0 6.0131 6.0131 84.077 0 0 0 2.1741655787624836 2.1741655787624836 2.1741655787624836 2.1741655787624836 0 2.6237125054200234 1.5228787452803376 0 0 + + HY{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[YQ]{I|L}A{I|L}H;[H{I|L}]Y[YQ]{I|L}AH{I|L};{I|L}HY[YQ]{I|L}AH{I|L};[H{I|L}]Y[YQ]{I|L}A{I|L}H 6.0131;5.8252;5.0945;3.4034;2.815;2.6727 +;+;-;-;-;- + 152 + NaN NaN 148049 NaN 8431 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11110 52.622 NaN 272950 35 0 20721 0.261 + 9077 HPFFKDMSL 9 62 561.2759590945816 1120.537365255963 2 561.2772827148438 MULTI HCD FTMS 0 0 0 11102 85340.2890625 0.3430100915124231 -5 0.11786651611328125 8 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 16.149105407346934 0.22083165093524068 1 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.7842 0 0 0 736.3343716592146 736.3343716592146 16.63303128443836 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.7842 + + 132 + NaN NaN 130859.6 NaN 8432 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11111 52.625 NaN 214540 35 0 28794 0.261 + 33002 YAVRDTIAL 9 57 511.28761475005996 1020.5606765669199 2 511.28753662109375 MULTI HCD FTMS 0 0 0 11102 63715.39453125 0.5131853612899426 -3 0.0787200927734375 9 Unmodified _YAVRDTIAL_ ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C 31.26834338654808 0.10542797264966089 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VR{[ES]|[DT]|[{I|L}C]}{I|L}A{I|L} 9 0 + 43.808 0 0 4.2925 4.2925 86.631 0 0 0 14.114999749340384 11.640749640939916 11.640749640939916 11.989700043360184 0 1.242992819099939 1.5228787452803376 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VR{[ES]|[DT]|[{I|L}C]}{I|L}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VR{[ES]|[DT]|[{I|L}C]}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE[RK]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[TV]|[{I|L}S]}{[RE]|[WV]}A{I|L} 4.2925;3.1177;2.9336;2.4159 +;-;-;- + 83 NaN NaN 122465.1 NaN 8433 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11112 52.629 NaN 118820 35 0 14275 0.261 -1 LPMSDQYVKL 10 36 605.3131367268371 1208.6117205204741 2 605.3133544921875 MULTI HCD FTMS 0 0 0 11102 44681.4140625 0.6424513035337612 -4 0.10491561889648438 10 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 23.80106514851385 0.2884848839100546 1 {I|L}P{M(Oxidation (M))|F} 3 -1 23.188 0 0 1.9185 0 0 0 848.4166465083758 848.4166465083758 0.5360498482393439 0 0 0 0 0 0 0 0 {I|L}P{M(Oxidation (M))|F} 1.9185 + + 25 + NaN NaN 107337.6 NaN 8434 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11113 52.632 NaN 77279 35 0 10536 0.261 -1 0 40 600.1371788449005 NaN 0 599.7612915039062 PEAK HCD FTMS 0 0 0 11102 7202.5751953125 0.5212485420923719 -1 0.022953033447265625 11 NaN NaN 1 AY 2 -1 9.464 0 0 0.78981 0 0 131.8496522213141 829.2936495416624 961.1433017629765 0 0 0 0 0 0 0 0 0 AY 0.78981 - 3 + NaN NaN 96648.5 NaN 8435 2676 11102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11115 52.637 NaN 205490 35 0 18945 0.327 + 9971 IEHGIITNW 9 58 541.785089033384 1081.555625133568 2 541.785400390625 MULTI HCD FTMS 0 0 0 11114 96809.5546875 0.037207897706636225 27 -0.6882820129394531 1 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 46.020951573049366 0.037705236580089195 1 VTNSV 5 8 58.488 0 0 5.4077 0 0 563.3052235334 0 563.3052235334 0 45.21652514092061 0 0 0 1.5 0 0.7742275032520141 0.3807196863200844 VTNSV 5.4077 - 95 NaN NaN 120061.9 NaN 8436 2677 11114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11116 52.641 NaN 294110 35 0 22260 0.261 -1 HPFFTISCI 9 64 561.2759590945816 1120.537365255963 2 561.2762451171875 MULTI HCD FTMS 0 0 0 11114 109861.8125 0.4415699873215515 -4 0.1182708740234375 2 Carbamidomethyl (C) _HPFFTISC(Carbamidomethyl (C))I_ ENSG00000205423|ENST00000427478|CNEP1R1;ENST00000566482.5_1_16:50060318-50068094:+|nuORF;nc|ENSG00000205423|Q8N9A8-2|CNEP1R1 21.74664581756881 0.17247014374749275 1 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.7842 0 0 0 736.3351598126872 736.3351598126872 11.616136822334369 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.7842 + + 172 + NaN NaN 133852.4 NaN 8437 2677 11114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11117 52.645 NaN 139800 35 0 14200 0.261 -1 KWLFRMMS 8 47 557.7794636150969 1113.5443742969937 2 557.78076171875 MULTI HCD FTMS 0 0 0 11114 35440.57421875 0.023619623076011183 26 -0.6687355041503906 3 Oxidation (M) _KWLFRM(Oxidation (M))MS_ ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 5.230669730166228 0.5342319408533849 1 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 33.188 0 0 2.9804 0 0 662.3740079413282 0 662.3740079413282 0 14.604093769761874 0 0 0 1.5 0 0.5 0 TN{[MS]|[{M(Oxidation (M))|F}A]} 2.9804 - 63 + NaN NaN 100628.2 NaN 8438 2677 11114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11118 52.648 NaN 143430 35 0 15816 0.261 + 27925 TENDIRVMF 9 54 570.7713384673864 1139.5281240015727 2 571.3460083007812 MULTI HCD FTMS 0 0 0 11114 30723.052734375 0.5325199255686904 4 -0.10828781127929688 4 Oxidation (M) _TENDIRVM(Oxidation (M))F_ ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 40.23920728925047 0.06424668180817725 1 {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 46.806 0 0 4.1075 4.1075 84.88 0 0 0 2.390690719683093 2.390690719683093 2.390690719683093 9.208187539523749 0 2.3494850021680094 0 0 0 + + {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}N[K{I|L}]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}N[Q{I|L}]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1075;3.2994;1.8711;1.8711 +;-;-;- + 82 + NaN NaN 105174.9 NaN 8439 2677 11114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11119 52.652 NaN 138430 35 0 19750 0.262 + 783 ASSSEEVEL 9 63 475.7193473990191 949.4241418648382 2 475.71929931640625 MULTI HCD FTMS 0 0 0 11114 31105.841796875 0.6796069660628169 2 -0.05914306640625 5 Unmodified _ASSSEEVEL_ ENSG00000103549|ENST00000324685|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-3|RNF40;nc|ENSG00000103549|O75150-4|RNF40 21.74664581756881 0.17247014374749275 1 E{I|L} 2 7 28.711 0 0 3.0241 0 0 689.2896595685562 0 689.2896595685562 0 24.10728139283883 0 0 0 0.4247425010840047 0 0.3494850021680094 0 + E{I|L} 3.0241 + + 23 NaN NaN 101324.8 NaN 8440 2677 11114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11121 52.657 NaN 2815400 35 0 570410 0.327 + 15484 LPDMVVSHL 9 105 513.7679631974995 1025.521373461799 2 513.7681274414062 MULTI HCD FTMS 0 0 0 11120 1617236.75 1 0 0 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 164.5152109175784 6.8106583686994766E-09 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 114.39 0 0 11.154 11.154 95.802 0 0 0 67.25076544768977 10.642492736872597 10.642492736872597 12.085521743960342 0 2.885151878060192 1.5228787452803376 1.569341519366547 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}PD{M(Oxidation (M))|F}VV{I|L}[HS];[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}VV{I|L}SH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[DP]{I|L}[MT]{I|L}SH{I|L} 11.154;9.9757;9.0172;7.9467;7.1271;6.8113;6.8008;6.152;5.9316;5.7303 +;-;+;-;-;-;-;-;-;- + 4781 + NaN NaN 504460.8 NaN 8441 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11122 52.661 NaN 1568300 35 0 361120 0.261 + 29210 TYLDKVENI 9 93 547.7878325408293 1093.5611121484585 2 547.790283203125 MULTI HCD FTMS 0 0 0 11120 982701.5 1 0 0 2 Unmodified _TYLDKVENI_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 117.83759599426817 0.001662893820975323 1 [YT]{I|L}DKVEN{I|L} 9 0 + 88.488 0 0 8.0917 8.0917 91.555 0 0 0 9.493311024969188 9.493311024969188 9.493311024969188 9.208187539523749 0 2.2302046884880937 2 0.28872548999643577 0.4247425010840047 + + [YT]{I|L}DKVEN{I|L};[YT]{I|L}DKVEGG{I|L};TY{I|L}[WR]EN{I|L};[YT]{I|L}DKV{I|L}NE;[YT]{I|L}[WR]EN{I|L};[YT]{I|L}DKV{I|L}GGE;TY{I|L}{[QN]|[E{I|L}]|[KN]}AASN{I|L};TY{I|L}{[QN]|[E{I|L}]|[KN]}QTN{I|L};[YT]{I|L}[WR]EGG{I|L};[{I|L}T]YDKVEN{I|L} 8.0917;7.2497;7.2236;6.6904;6.1079;5.8483;5.4592;5.3467;5.2609;5.0054 +;-;-;-;-;-;-;-;-;- + 3557 NaN NaN 333061.8 NaN 8442 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11123 52.665 NaN 803110 35 0 66297 0.261 + 34680 YPTVDSNSL 9 77 498.23776480897766 994.4609766847553 2 498.23785400390625 MULTI HCD FTMS 0 0 0 11120 465567.40625 0.9061202308763693 1 -0.039531707763671875 3 Unmodified _YPTVDSNSL_ ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 176.83740622441886 1.0594397382223596E-10 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSNS{I|L} 9 0 + 94.043 0 0 9.4566 9.4566 95.139 0 0 0 16.22486274231747 16.478174818886373 16.22486274231747 12.703037561203843 0 1.8098943791441968 1.3979400086720375 1.0387254899964358 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSNS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSGGS{I|L};{[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSNS{I|L};{[TV]|[{I|L}S]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SNS{I|L};{[TV]|[{I|L}S]}DS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NS{I|L};{[TV]|[{I|L}S]}DSN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L};{[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSGGS{I|L};{[TV]|[{I|L}S]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SGGS{I|L};{[TV]|[{I|L}S]}DS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGS{I|L};{[TV]|[{I|L}S]}DSNVTPY 9.4566;8.1793;7.8251;7.7606;7.6849;6.6749;6.5477;6.4832;6.4075;6.3298 +;-;-;-;-;-;-;-;-;- + 1577 NaN NaN 212116.8 NaN 8443 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11124 52.668 NaN 372490 35 0 42987 0.261 -1 IPHMDIEAL 9 61 527.7666675310228 1053.5187821288455 2 527.7654418945312 MULTI HCD FTMS 0 0 0 11120 208856.703125 0.4188084070056417 20 -0.544677734375 4 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 26.88365393820708 0.12808753336095696 1 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 7 -1 48.448 0 0 4.5987 0 0 202.13188368965 0 202.13188368965 0 31.994332193581414 0 0 0 1 0 1.274227503252014 0 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 4.5987 - 134 NaN NaN 136764.2 NaN 8444 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11125 52.671 NaN 623070 35 0 160800 0.261 + 11101 IYIAGHPAF 9 48 494.76624313452044 987.5179333358409 2 494.7664794921875 MULTI HCD FTMS 0 0 0 11120 216586.796875 0.24540345041742231 -4 0.11826324462890625 5 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 109.15424536547461 0.003080475237576971 1 {I|L}Y{I|L}AGHPA{M(Oxidation (M))|F} 9 0 + 97.573 0 0 9.8806 9.8806 95.063 0 0 0 91.88670047696206 16.478174818886373 16.478174818886373 11.478174818886373 0 2.5 1.6989700043360187 0 0 + + {I|L}Y{I|L}AGHPA{M(Oxidation (M))|F};{I|L}Y{I|L}QHPA{M(Oxidation (M))|F};[Y{I|L}]{I|L}AGHPA{M(Oxidation (M))|F};{I|L}YG[{I|L}A]HPA{M(Oxidation (M))|F};[Y{I|L}]A{I|L}GHPA{M(Oxidation (M))|F};[Y{I|L}]{I|L}QHPA{M(Oxidation (M))|F};[Y{I|L}]GH[{I|L}A]PA{M(Oxidation (M))|F} 9.8806;8.7183;7.2463;6.7678;6.1303;6.084;4.5092 +;-;+;-;-;-;- + 210 + NaN NaN 188856.9 NaN 8445 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11126 52.675 NaN 214860 35 0 66610 0.261 -1 LMFFFCISTIL 11 54 450.89801692059274 NaN 0 450.8978576660156 PEAK HCD FTMS 0 0 0 11120 64315.47265625 0.7272819271020144 1 -0.039531707763671875 6 Oxidation (M) _LM(Oxidation (M))FFFCISTIL_ tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1 4.715918219556657 0.3287424415929785 1 W 1 -1 3.9794 0 0 0.44226 0 0 582.6083984878668 128.07186304263908 710.6802615305058 0 0 0 0 0 0 0 0 0 W 0.44226 - 8 + NaN NaN 103940.3 NaN 8446 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11127 52.678 NaN 229640 35 0 38257 0.261 + -1 LVMRSDCWC 9 56 593.245400848901 1184.476248764602 2 593.2451782226562 MULTI HCD FTMS 0 0 0 11120 78937.1484375 0.09675005503976575 12 -0.3347206115722656 7 Carbamidomethyl (C),Oxidation (M) _LVM(Oxidation (M))RSDC(Carbamidomethyl (C))WC_ REV__ENST00000541451.5_3_16:2198830-2200035:+|nuORF;REV__ENST00000565592.5_1_16:2190927-2200035:+|nuORF 4.3292370932331545 0.3181982124262546 1 [{I|L}V]{I|L}DE 5 -1 45.546 0 0 3.8453 0 0 0 612.1428316705686 612.1428316705686 38.556518697048716 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 [{I|L}V]{I|L}DE 3.8453 - 14 + NaN NaN 111921.6 NaN 8447 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11128 52.681 NaN 105660 35 0 13553 0.262 + 22143 QKEDELSL 8 42 481.2457628414039 960.4769727496079 2 481.2456970214844 MULTI HCD FTMS 0 0 0 11120 56175.4921875 0.10703554565976332 8 -0.22983932495117188 8 Unmodified _QKEDELSL_ ENSG00000214193|ENST00000453908|SH3D21 34.40172386719151 0.3028461740636462 1 E{I|L}S{I|L} 4 4 48.047 0 0 5.0025 0 0 500.2232838361344 0 500.2232838361344 0 33.44335023848103 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + E{I|L}S{I|L} 5.0025 + + 27 NaN NaN 99338.2 NaN 8448 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11129 52.685 NaN 136110 35 0 11431 0.261 -1 0 54 455.24857434187226 454.24129787527227 1 455.2487487792969 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 1 W 1 -1 15.485 0 0 3.4089 0 0 250.15157421980194 0 250.15157421980194 0 15.395906230238126 0 0 0 0 0 0 0 W 3.4089 - 7 + NaN NaN 118409.9 NaN 8449 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11130 52.688 NaN 248830 35 0 29707 0.261 + 24384 RYIPTAAAF 9 62 505.276884993559 1008.539217053918 2 505.2769775390625 MULTI HCD FTMS 0 0 0 11120 64575.1875 0.008972046477219369 70 -1.820404052734375 10 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 1 AA{M(Oxidation (M))|F} 3 6 32.619 0 0 3.2343 0 0 701.3875599591812 0 701.3875599591812 0 18.807196863200843 0 0 0 0.8807196863200843 0 0 0 + AA{M(Oxidation (M))|F} 3.2343 + + 131 NaN NaN 120775.9 NaN 8450 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11131 52.691 NaN 70233 35 0 11162 0.261 + 28337 TNTYLSGLL 9 31 491.2663543947167 980.5181558562334 2 491.26629638671875 MULTI HCD FTMS 0 0 0 11120 45141.015625 1 0 0 11 Unmodified _TNTYLSGLL_ REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF 7.608950283845883 0.29333554423920943 1 SG{I|L}{I|L} 4 -1 35.745 0 0 3.6456 0 0 592.2843495099625 0 592.2843495099625 0 35.74539712336197 0 0 0 0.3807196863200844 0 0 0 SG{I|L}{I|L} 3.6456 + + 6 NaN NaN 95645.2 NaN 8451 2678 11120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11133 52.696 NaN 1017400 35 0 196180 0.327 + 22885 QYPGRSLVF 9 73 533.7880158805921 1065.561478827984 2 533.78759765625 MULTI HCD FTMS 0 0 0 11132 408972.03125 0.3547237703297075 -5 0.15779495239257812 1 Unmodified _QYPGRSLVF_ ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 65.23502041540118 0.010630085227462206 1 [YQ]PK{[RE]|[WV]}V{M(Oxidation (M))|F} 8 3 + 52.999 0 0 4.9738 4.9738 88.727 0 0 0 16.224862742317463 14.024174299985006 14.024174299985006 16.224862742317463 0 1.718765315847925 1.3979400086720375 0.75 1.1989700043360187 [YQ]PK{[RE]|[WV]}V{M(Oxidation (M))|F};[YQ]P{[NV]|[RG]}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};[YQ]P{[NV]|[RG]}YV[{I|L}A];[YQ]P[H{I|L}][QP][{I|L}A] 4.9738;3.4511;1.8147;1.1222 -;+;-;- + 160 NaN NaN 257376.3 NaN 8452 2679 11132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11134 52.701 NaN 349860 35 0 41812 0.261 + 27943 TEQLVPEPE 9 74 521.2580923985274 NaN 0 521.2717895507812 PEAK HCD FTMS 0 0 0 11132 10970.2705078125 0.5132058171710984 2 -0.049144744873046875 2 Unmodified _TEQLVPEPE_ REV__ENSG00000155761|ENST00000336338|SPAG17 14.838274106304384 0.2220448417561729 1 PNS 3 -1 19.842 0 0 1.907 0 0 147.03637795015828 592.3058565729124 739.3422345230706 0 0 0 0 0 0 0 1.4247425010840047 0 PNS 1.907 - 196 + NaN NaN 142467.8 NaN 8453 2679 11132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11135 52.704 NaN 610210 35 0 65519 0.261 + 32363 VYVQHPITF 9 81 552.2970902373241 1102.5796275414482 2 552.2970581054688 MULTI HCD FTMS 0 0 0 11132 219065.875 0.5816856642333053 -3 0.09869384765625 3 Unmodified _VYVQHPITF_ ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF 134.295615338601 0.00034446139420701925 1 VYVQHP{I|L}T 8 1 95.459 0 0 8.6578 0 0 0 162.0559481256469 162.0559481256469 76.87547358047766 0 0 0 0 2.8979400086720375 1.5228787452803376 1.5328095104469872 0.3807196863200844 + VYVQHP{I|L}T 8.6578 + + 1566 + NaN NaN 175634 NaN 8454 2679 11132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11136 52.708 NaN 300260 35 0 23392 0.261 + 14053 KYVKIFDNF 9 80 587.3187098470363 1172.6228667608725 2 587.3186645507812 MULTI HCD FTMS 0 0 0 11132 117069.84375 0.8543050820324298 -2 0.05914306640625 4 Unmodified _KYVKIFDNF_ ENSG00000005801|ENST00000399602|ZNF195;nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195 59.368380827593164 0.01846506874148156 1 KYV{I|L}K{M(Oxidation (M))|F}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9 2 + 52.439 0 0 4.4719 4.4719 90.282 0 0 0 44.48011573931421 10.954839578393347 10.954839578393347 52.43891591275496 0 1.7931576817365436 0 0.28872548999643577 0.7059771852360797 KYV{I|L}K{M(Oxidation (M))|F}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4.4719 - 516 + NaN NaN 133121.2 NaN 8455 2679 11132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11137 52.711 NaN 179600 35 0 31831 0.261 -1 GMSYLYASWM 10 51 612.754843089263 1223.4951332453259 2 612.7546997070312 MULTI HCD FTMS 0 0 0 11132 61894.48828125 1 0 0 5 Oxidation (M) _GMSYLYASWM(Oxidation (M))_ ENSG00000182459|ENST00000333437|TEX19;TEX19|p.S95Lfs*2|1|0.17|ENSG00000182459|chr17:82362425-82362426|-/G|frameshift_variant 6.2057823575117 0.44245551207394906 1 {I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{M(Oxidation (M))|F}[MN] 7 -1 30.334 0 0 2.4793 0 0 328.10899550605626 0 328.10899550605626 0 14.136438166825581 0 0 0 1 0 0.8494850021680094 0 {I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{M(Oxidation (M))|F}[MN] 2.4793 - 55 NaN NaN 119925.1 NaN 8456 2679 11132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11139 52.716 NaN 1698000 35 0 156660 0.327 + 857 AWPFLEPVD 9 90 537.2690392578539 1072.5235255825078 2 538.284912109375 MULTI HCD FTMS 0 0 0 11138 65332.81640625 0.4273557379349663 19 -0.511749267578125 1 Unmodified _AWPFLEPVD_ ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;nc|ENSG00000171634|Q12830|BPTF 16.942295170755138 0.21397866736869717 1 {[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TD 8 7 53.463 0 0 4.9848 0 0 0 169.05475051830777 169.05475051830777 0.32915457737350806 0 0 0 0 0 0.9208187539523752 2.642642683904553 0 {[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TD 4.9848 - 1569 NaN NaN 350985.5 NaN 8457 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11140 52.72 NaN 686810 35 0 132340 0.261 + 6816 FPSLQQPQP 9 94 521.2716177525932 1040.5286825719863 2 522.2904663085938 MULTI HCD FTMS 0 0 0 11138 18417.357421875 0.06376625180485446 17 -0.46266937255859375 2 Unmodified _FPSLQQPQP_ nc|ENSG00000152601|Q9NR56-7|MBNL1 21.74664581756881 0.17247014374749275 1 [{I|L}P]DERT{I|L}S 8 8 38.342 0 0 3.6849 0 0 0 126.02990080832718 126.02990080832718 7.97544643890296 0 0 0 0 0 1.5228787452803376 0.6694451763165201 0 [{I|L}P]DERT{I|L}S 3.6849 - 656 NaN NaN 191470.3 NaN 8458 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11141 52.724 NaN 505360 35 0 72808 0.261 + 33418 YGSALYDEVM 10 70 574.2509031578427 1146.4872533824853 2 574.7724609375 MULTI HCD FTMS 0 0 0 11138 19564.04296875 0.20101921709350581 6 -0.1707305908203125 3 Unmodified _YGSALYDEVM_ REV__ENSG00000171469|ENST00000302851|ZNF561;REV__ENST00000465974.5_1_19:9724728-9730180:-|nuORF;REV__ENST00000479943.5_1_19:9727655-9730186:-|nuORF;REV__ENST00000490893.5_1_19:9728715-9730186:-|nuORF;REV__ENST00000495503.5_1_19:9724728-9730186:-|nuORF 6.723162845929126 0.4397169348982109 1 MSVST{M(Oxidation (M))|F}VSAM 10 -1 59.117 0 0 5.1564 0 0 88.0258170596863 0 88.0258170596863 0 51.88547520912806 0 0 0 0.2742275032520141 0 0.7614393726401688 0 MSVST{M(Oxidation (M))|F}VSAM 5.1564 - 382 + NaN NaN 163590 NaN 8459 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11142 52.727 NaN 377310 35 0 72056 0.261 -1 GDFRYTTTMG 10 70 582.7515389352 1163.4885249371998 2 582.76953125 MULTI HCD FTMS 0 0 0 11138 15688.763671875 0.2809558543098207 5 -0.14449310302734375 4 Oxidation (M) _GDFRYTTTM(Oxidation (M))G_ ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R 6.2057823575117 0.44245551207394906 1 TV[YR]VS[DC] 8 -1 26.432 0 0 2.2718 0 0 222.06387526679845 0 222.06387526679845 0 17.47933455448525 0 0 0 0.4247425010840047 0 0.3054621874040891 0 TV[YR]VS[DC] 2.2718 - 251 NaN NaN 142753.7 NaN 8460 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11143 52.73 NaN 57738 35 0 5356 0.261 -1 FLSGWRGWCV 10 45 634.3076417024556 NaN 0 634.309326171875 PEAK HCD FTMS 0 0 0 11138 21357.8515625 0.5216013999910135 -7 0.196990966796875 5 Carbamidomethyl (C) _FLSGWRGWC(Carbamidomethyl (C))V_ PITX1|p.A190Gfs*382|1|0.23|ENSG00000069011|chr5:135029157-135029158|-/A|frameshift_variant 3.2813086475875832 0.33737594360511275 1 K 1 -1 3.0989 0 0 0.24467 0 0 391.21573398909237 744.2674044244749 1135.4831384135673 0 0 0 0 0 0 0 0 0 K 0.24467 - 3 + NaN NaN 91371.2 NaN 8461 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11144 52.734 NaN 102930 35 0 26622 0.264 + 18969 NAKKHLLK 8 52 476.3064503589635 NaN 0 476.3062744140625 PEAK HCD FTMS 0 0 0 11138 22589.23828125 0.6583999189359663 -11 0.3053169250488281 6 Unmodified _NAKKHLLK_ REV__ENST00000510209.5_1_4:99916904-99957225:+|nuORF 2.577480529830294 0.38822285293237185 1 {I|L} 1 -1 4.6041 0 0 0.48434 0 0 132.18675798965222 702.3040255182249 834.490783507877 0 0 0 0 0 0 0 0 0 {I|L} 0.48434 + + 4 + NaN NaN 97854.5 NaN 8462 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11145 52.737 NaN 79479 35 0 12509 0.261 -1 CLPLPELKVF 10 44 405.8980887942879 1214.6724369830638 3 406.232421875 MULTI HCD FTMS 0 0 0 11138 6439.84375 0.3148760502632785 1 -0.029567718505859375 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))LPLPELKVF_ ENST00000533736.5_1_4:39640849-39640909:+|nuORF 6.630372943996041 0.44020808660041416 1 W 1 -1 15.485 0 0 1.2748 0 0 1010.582591257281 0 1010.582591257281 0 1.5051499783199063 0 0 0 0 0 0 0 W 1.2748 - 17 + NaN NaN 93904.4 NaN 8463 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11146 52.74 NaN 30002 35 0 3671.3 0.261 + 3645 ELHHFYDEI 9 26 601.7794067602002 1201.5442605872004 2 601.7801513671875 MULTI HCD FTMS 0 0 0 11138 17222.263671875 0.9196962158926044 1 -0.029567718505859375 8 Unmodified _ELHHFYDEI_ REV__ENSG00000089351|ENST00000317991|GRAMD1A;REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF;REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A;REV__nc|ENSG00000089351|Q96CP6-3|GRAMD1A 3.944395688203298 0.32111559684428237 1 E{I|L} 2 -1 19.464 0 0 1.6199 0 0 941.4039784162125 0 941.4039784162125 0 19.463950151760656 0 0 0 0 0 0 0 E{I|L} 1.6199 + + 2 NaN NaN 85689.3 NaN 8464 2680 11138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11148 52.745 NaN 886110 35 0 152610 0.327 + 8770 HIDAAYAGTAF 11 100 568.772343270362 1135.5301336075238 2 568.7724609375 MULTI HCD FTMS 0 0 0 11147 360811.21875 0.25494958578163235 6 -0.167327880859375 1 Unmodified _HIDAAYAGTAF_ ENSG00000140287|ENST00000267845|HDC;ENST00000559816.1_1_15:50534459-50545113:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 13.90604991867851 0.33591854289260503 1 [HA]SVSTS{M(Oxidation (M))|F} 8 7 71.89 0 0 6.331 0 0 0 316.14023767642817 316.14023767642817 56.50612704951213 0 0 0 0 2.638210492164445 0 1.086696871556164 0 [HA]SVSTS{M(Oxidation (M))|F} 6.331 - 1262 + NaN NaN 220563.8 NaN 8465 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11149 52.75 NaN 565270 35 0 77596 0.261 + 15522 LPDPGFQKI 9 61 507.7846986177862 1013.5548443023724 2 508.30206298828125 MULTI HCD FTMS 0 0 0 11147 15933.923828125 0.44156798528469177 -2 0.049144744873046875 2 Unmodified _LPDPGFQKI_ ENSG00000059378|ENST00000263549|PARP12 19.361941925380144 0.1930734562688509 1 {I|L}PD 3 6 21.228 0 0 2.0944 0 0 0 685.3682585827335 685.3682585827335 6.62417585494282 0 0 0 0 0.5 0 0.3252574989159953 0 + {I|L}PD 2.0944 + + 116 + NaN NaN 173654.3 NaN 8466 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11150 52.753 NaN 199740 35 0 16591 0.261 + 31370 VYADQPHIF 9 56 545.2720286556864 1088.5295043781728 2 545.2732543945312 MULTI HCD FTMS 0 0 0 11147 69808.515625 0.15775759705506112 14 -0.38402557373046875 3 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 32.78568957990786 0.09846250359632436 1 [YT]V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}STP 8 7 57.638 0 0 5.295 0 0 0 162.05380713464254 162.05380713464254 24.731975075880328 0 0 0 0 1.524227503252014 2 0 0 [YT]V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}STP 5.295 - 324 NaN NaN 111434.2 NaN 8467 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11151 52.757 NaN 218230 35 0 23680 0.262 -1 SYCYECTARF 10 55 433.8421898548713 1298.504740164814 3 433.8425598144531 MULTI HCD FTMS 0 0 0 11147 67006.1015625 0.5826168294768033 5 -0.14116287231445312 4 Carbamidomethyl (C) _SYCYEC(Carbamidomethyl (C))TARF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 7.0370850670814 0.43805529467587806 1 SY[DN]{I|L}Y 6 -1 58.461 0 0 4.5022 0 0 0 540.1702974686922 540.1702974686922 37.49159686636801 0 0 0 0 1.305462187404089 2 0 0 SY[DN]{I|L}Y 4.5022 - 39 + NaN NaN 118759.3 NaN 8468 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11152 52.76 NaN 118840 35 0 14007 0.261 + 19007 NATRDFLL 8 45 475.258605681695 948.50265843019 2 475.2589416503906 MULTI HCD FTMS 0 0 0 11147 56447.74609375 0.6880256980088776 -2 0.049144744873046875 5 Unmodified _NATRDFLL_ ENSG00000108344|ENST00000264639|PSMD3 34.40172386719151 0.3028461740636462 1 {[QG]|[NA]}T 3 5 27.932 0 0 2.9448 0 0 0 659.3546846979124 659.3546846979124 1.9627248839266542 0 0 0 0 0.5 1.6989700043360187 0 0 + {[QG]|[NA]}T 2.9448 + + 5 + NaN NaN 107211 NaN 8469 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11153 52.763 NaN 80595 35 0 7273.8 0.261 -1 AYDMDICITI 10 42 607.773921254685 1213.5332895761699 2 607.7890014648438 MULTI HCD FTMS 0 0 0 11147 17942.41015625 0.23889347902541075 14 -0.38402557373046875 6 Carbamidomethyl (C) _AYDMDIC(Carbamidomethyl (C))ITI_ ENSG00000135144|ENST00000548759|DTX1 6.723162845929126 0.4397169348982109 1 N{[C(Carbamidomethyl (C))G]|[NC]} 3 -1 10.458 0 0 0.86175 0 0 864.4163372557631 0 864.4163372557631 0 5.853481135844875 0 0 0 0 0 0 0 N{[C(Carbamidomethyl (C))G]|[NC]} 0.86175 - 4 NaN NaN 97726.4 NaN 8470 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11154 52.767 NaN 74776 35 0 5598.9 0.261 -1 AYPHNLMTF 9 41 555.2577483138126 1108.5009436944251 2 555.2579345703125 MULTI HCD FTMS 0 0 0 11147 14421.60546875 0.010025862537924105 134 -3.4344100952148438 7 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 24.020572477871973 0.15282392193088168 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 25.93 0 0 2.3392 0 0 695.3385487287125 0 695.3385487287125 0 20.445312593723983 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.3392 + + 15 NaN NaN 97187.1 NaN 8471 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11155 52.77 NaN 97078 35 0 26448 0.261 + 14196 LAPHDVGVF 9 40 477.7558274887532 NaN 0 477.7563171386719 PEAK HCD FTMS 0 0 0 11147 15109.9462890625 0.45038482111503053 4 -0.11492538452148438 8 Unmodified _LAPHDVGVF_ ENSG00000132326|ENST00000254657|PER2;nc|ENSG00000132326|O15055-2|PER2 7.289230182591677 0.2599242500475609 1 V 1 8 9.2917 0 0 0.97449 0 0 165.0800876082838 686.3272799127561 851.40736752104 0 0 0 0 0 0.3807196863200844 0 0 0 + V 0.97449 + + 4 + NaN NaN 103952.5 NaN 8472 2681 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11157 52.775 NaN 538960 35 0 59518 0.327 + 9799 HYLYQIAHL 9 72 579.3086753728791 1156.602797812558 2 579.308837890625 MULTI HCD FTMS 0 0 0 11156 220242.046875 0.7995759530420493 1 -0.02954864501953125 1 Unmodified _HYLYQIAHL_ ENSG00000189091|ENST00000302516|SF3B3 74.42276476219924 0.007657080072768255 1 HY{I|L}K[{M(Oxidation (M))|F}E]AH{I|L} 9 3 + 77.374 0 0 6.6898 6.6898 87.697 0 0 0 7.579948407108375 7.579948407108375 7.579948407108375 7.579948407108375 0 2.1549471895720984 1.5228787452803376 0.7742275032520141 0 HY{I|L}K[{M(Oxidation (M))|F}E]AH{I|L};{[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L};HY{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[QA]{I|L}YH{I|L};{[WN]|[YH]}[QA]{I|L}{I|L}YH{I|L};{I|L}HYK[{M(Oxidation (M))|F}E]AH{I|L};[H{I|L}]Y[YQ]{I|L}AH{I|L};{I|L}HY[YQ]{I|L}AH{I|L};[H{I|L}]Y[QA]{I|L}YH{I|L};[HA]{I|L}[Q{I|L}]YYH{I|L} 6.6898;6.0344;5.937;5.0198;4.3957;3.6389;3.4314;2.756;2.4169;2.0867 -;+;+;-;-;-;-;-;-;- + 505 + NaN NaN 170468.6 NaN 8473 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11158 52.779 NaN 553100 35 0 142330 0.262 + 29282 TYLPQVSHYRF 11 54 470.9102623455491 1409.7089576368473 3 470.9102783203125 MULTI HCD FTMS 0 0 0 11156 128902.953125 0.8252983730001884 -3 0.07871627807617188 2 Unmodified _TYLPQVSHYRF_ ENSG00000144036|ENST00000272427|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 7.846045518447754 0.3845105762037768 1 TY{I|L} 3 8 55.445 0 0 3.9331 0 0 0 1029.4902850996402 1029.4902850996402 48.455612550363796 0 0 0 0 0.9247425010840047 2 0 0 + TY{I|L} 3.9331 + + 16 + NaN NaN 163336.3 NaN 8474 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11159 52.783 NaN 199390 35 0 23785 0.261 + 105 ADKMDMSL 8 62 484.7067472364155 967.398941539631 2 484.70697021484375 MULTI HCD FTMS 0 0 0 11156 81922.5390625 0.2515225795693362 16 -0.42642974853515625 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 49.55428908609986 0.13052543569786648 1 {M(Oxidation (M))|F}S{I|L} 3 5 36.555 0 0 3.7786 0 0 602.2386952130875 0 602.2386952130875 0 26.861818737241734 0 0 0 0.805462187404089 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.7786 + + 27 NaN NaN 114225.9 NaN 8475 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11160 52.786 NaN 132250 35 0 13024 0.261 + 33003 YAVRDTIAL 9 57 511.28761475005996 1020.5606765669199 2 511.28765869140625 MULTI HCD FTMS 0 0 0 11156 71036.6015625 0.5721528416461659 3 -0.08535385131835938 4 Unmodified _YAVRDTIAL_ ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C 18.1463463914782 0.20357593197100715 1 A{I|L} 2 7 25.969 0 0 2.5446 0 0 818.4296295674192 0 818.4296295674192 0 13.433181346311471 0 0 0 0.5 0 0 0 + A{I|L} 2.5446 + + 44 NaN NaN 92077 NaN 8476 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11161 52.79 NaN 104140 35 0 11406 0.261 -1 LPMSDQYVKL 10 47 605.3131367268371 1208.6117205204741 2 605.3128051757812 MULTI HCD FTMS 0 0 0 11156 45429.99609375 0.6532147834251048 2 -0.049137115478515625 5 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 17.44264345198275 0.3479594151168503 1 {I|L}P{M(Oxidation (M))|F} 3 -1 20.802 0 0 1.7211 0 0 0 848.4143160455686 848.4143160455686 8.812281309285623 0 0 0 0 0 0 0 0 {I|L}P{M(Oxidation (M))|F} 1.7211 + + 20 + NaN NaN 97488.4 NaN 8477 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11162 52.793 NaN 220880 35 0 33836 0.261 + 35773 YYMKDLPTSF 10 63 640.7971275494345 1279.579702165669 2 641.2992553710938 MULTI HCD FTMS 0 0 0 11156 36739.1171875 0.2991117806652565 -4 0.11824798583984375 6 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 62.86856922530385 0.030989390483997268 1 YY{M(Oxidation (M))|F}KD{I|L}PTS{M(Oxidation (M))|F} 10 0 + 93.822 0 0 7.3323 7.3323 95.97 0 0 0 25.764837301042718 55.86365002801443 25.764837301042718 93.82245020145518 0 2.274227503252014 2 0.4247425010840047 0 + + YY{M(Oxidation (M))|F}KD{I|L}PTS{M(Oxidation (M))|F} 7.3323 + + 104 NaN NaN 120869.1 NaN 8478 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11163 52.796 NaN 88381 35 0 9129.8 0.261 + -1 LEKEEYAMCI 10 48 622.7815823976053 1243.5486118620106 2 622.7772216796875 MULTI HCD FTMS 0 0 0 11156 24713.3984375 0.35233546302605867 10 -0.2756233215332031 7 Oxidation (M) _LEKEEYAM(Oxidation (M))CI_ REV__ENSG00000196367|ENST00000456197|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5|TRRAP 2.9952420565917617 0.4594494122822477 1 Q{I|L} 2 -1 20.969 0 0 1.6862 0 0 984.4015980451187 0 984.4015980451187 0 16.989700043360187 0 0 0 0 0 0 0 Q{I|L} 1.6862 - 5 NaN NaN 97270.6 NaN 8479 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11164 52.8 NaN 129670 35 0 11684 0.261 + -1 PFWGGIPCFL 10 52 589.7872843804672 1177.5600158277343 2 589.78759765625 MULTI HCD FTMS 0 0 0 11156 36983.75390625 0.8570924596323312 2 -0.049137115478515625 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PFWGGIPCFL_ REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|27|2|sense 7.910154910731844 0.4334339971971892 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.2053 0 0 899.3946551733238 0 899.3946551733238 0 18.89075625191822 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.2053 + + 19 NaN NaN 98635.3 NaN 8480 2682 11156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11166 52.804 NaN 2299600 35 0 467850 0.327 + 15485 LPDMVVSHL 9 100 513.7679631974995 1025.521373461799 2 513.7681884765625 MULTI HCD FTMS 0 0 0 11165 1298400.625 0.8028512986734936 5 -0.12781524658203125 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 149.9946105101851 8.83195450578534E-06 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 115.29 0 0 11.242 11.242 95.987 0 0 0 73.93532636596107 10.642492736872597 10.642492736872597 12.597046968434142 0 2.885151878060192 1.5228787452803376 1.6593793813122062 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}PD{M(Oxidation (M))|F}VV{I|L}[HS];[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}VV{I|L}SH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L} 11.242;10.014;9.0621;7.8157;6.9861;6.9376;6.8456;6.2784;5.9663;5.9179 +;-;+;-;-;-;-;-;-;- + 2779 + NaN NaN 423815.2 NaN 8481 2683 11165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11167 52.809 NaN 972180 35 0 131970 0.261 + 35959 YYVRAVLHL 9 81 567.3270629486897 1132.6395729641793 2 567.3270263671875 MULTI HCD FTMS 0 0 0 11165 457582.90625 0.9858655590346355 -1 0.02954864501953125 2 Unmodified _YYVRAVLHL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 74.42276476219924 0.007657080072768255 1 YYVRAV{I|L}H{I|L} 9 0 + 80.128 0 0 7.0745 7.0745 94.192 0 0 0 19.547509540478032 16.478174818886373 16.478174818886373 36.29493455131808 0 2.1989700043360187 1.5228787452803376 0 0.5796896906561032 + + YYVRAV{I|L}H{I|L};[H{I|L}]{[DS]|[MA]|[CV]|TT}[W{I|L}]{I|L}H{I|L} 7.0745;3.87 +;- + 205 NaN NaN 233811.9 NaN 8482 2683 11165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11168 52.812 NaN 487100 35 0 40316 0.261 + 9078 HPFFKDMSL 9 85 561.2759590945816 1120.537365255963 2 561.2761840820312 MULTI HCD FTMS 0 0 0 11165 207084.84375 0.8323406445635783 2 -0.055805206298828125 3 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 36.506200033944 0.08138327636155518 1 HVMD{I|L}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 7 + 33.393 0 0 2.9801 2.9801 80.592 0 0 0 6.002443347639016 2.1952464844381723 2.1952464844381723 3.3836390385291253 0 0.13315964564237345 0 0 0 HVMD{I|L}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F};HP{M(Oxidation (M))|F}SG[{I|L}A]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};HP[{M(Oxidation (M))|F}T]{I|L}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F};HVY{I|L}{[CT]|[{M(Oxidation (M))|F}G]}WS{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS][YR]{M(Oxidation (M))|F}C{I|L};HVM{[RE]|[WV]}SYS{I|L};HVY{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{M(Oxidation (M))|F};[YT][VG][YR]{M(Oxidation (M))|F}C{I|L};HVY{I|L}S{[WT]|[RM]}C{I|L};HVY{I|L}S{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F} 2.9801;2.6781;2.5589;2.2818;2.1128;2.0092;1.9688;1.9148;1.8396;1.8384 -;-;-;-;-;-;-;-;-;- 1924 + NaN NaN 165244.6 NaN 8483 2683 11165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11169 52.816 NaN 191710 35 0 15792 0.261 + 34681 YPTVDSNSL 9 54 498.23776480897766 994.4609766847553 2 498.23779296875 MULTI HCD FTMS 0 0 0 11165 85303.328125 0.16602337349544147 6 -0.15740966796875 4 Unmodified _YPTVDSNSL_ ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 60.07390631473393 0.0174780869009295 1 DSNS{I|L} 5 4 53.245 0 0 5.3542 0 0 460.23225600410314 0 460.23225600410314 0 40.682503180159344 0 0 0 1.024227503252014 0 0.3494850021680094 0.3054621874040891 + DSNS{I|L} 5.3542 + + 153 NaN NaN 109754.3 NaN 8484 2683 11165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11170 52.819 NaN 38968 35 0 5320.3 0.261 + -1 SHCFFPSVCCM 11 28 439.8338928222656 NaN 0 439.8338928222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _SHCFFPSVC(Carbamidomethyl (C))CM_ REV__ENSG00000235118|ENST00000441223|FAM237A 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94959.8 NaN 8485 2683 11165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11172 52.824 NaN 2122400 35 0 463820 0.327 + 22886 QYPGRSLVF 9 88 533.7880158805921 1065.561478827984 2 533.7879638671875 MULTI HCD FTMS 0 0 0 11171 1152931 1 0 0 1 Unmodified _QYPGRSLVF_ ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 92.65332237495696 0.004456439685314431 1 [YQ]PK{[RE]|[WV]}V{M(Oxidation (M))|F} 8 3 + 60.51 0 0 5.6787 5.6787 83.414 0 0 0 11.05749576824094 11.05749576824094 11.05749576824094 1.845697247108184 0 1.7302046884880937 1.3979400086720375 0.6549471895720984 1.4876954943324545 [YQ]PK{[RE]|[WV]}V{M(Oxidation (M))|F};[YQ]PGR{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};[Q{I|L}]{M(Oxidation (M))|F}Q{[RE]|[WV]}V{M(Oxidation (M))|F};[YQ]P[H{I|L}]QP[{I|L}A];[YQ]PGR[YV][{I|L}A];[EP][RK][YQ]V{M(Oxidation (M))|F};[YQ]P[H{I|L}][AG]P[{I|L}A];[EP][RK]V[YQ]{M(Oxidation (M))|F};[{I|L}V]SQ[H{I|L}]P{[WS]|[C(Carbamidomethyl (C)){I|L}]};[NS]{I|L}{I|L}[H{I|L}]P{[WS]|[C(Carbamidomethyl (C)){I|L}]} 5.6787;5.5055;2.042;1.9676;1.8354;1.4024;1.1035;0.87827;0.85474;0.34487 -;+;-;-;-;-;-;-;-;- + 363 NaN NaN 409015.5 NaN 8486 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11173 52.828 NaN 1447500 35 0 371890 0.261 + 11102 IYIAGHPAF 9 64 494.76624313452044 987.5179333358409 2 494.7662658691406 MULTI HCD FTMS 0 0 0 11171 675097.0625 0.7649180416098077 2 -0.0624542236328125 2 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 93.76273176245871 0.004427368897683185 1 {I|L}Y{I|L}AGH[PA]{M(Oxidation (M))|F} 9 0 + 89.614 0 0 9.0747 9.0747 94.413 0 0 0 69.12971259689115 14.137342758552691 14.137342758552691 11.478174818886373 0 2.5 1.6989700043360187 0 0 + + {I|L}Y{I|L}AGH[PA]{M(Oxidation (M))|F};{I|L}Y{I|L}QH[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}AGH[PA]{M(Oxidation (M))|F};{I|L}YG[{I|L}A]H[PA]{M(Oxidation (M))|F};[Y{I|L}]A{I|L}GH[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}QH[PA]{M(Oxidation (M))|F};{I|L}Y{I|L}[YG]{[NV]|[RG]}{M(Oxidation (M))|F};{I|L}YG[Y{I|L}]{[NV]|[RG]}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L}GH[PA]{M(Oxidation (M))|F};[Y{I|L}]G{[NV]|[RG]}[Y{I|L}]{M(Oxidation (M))|F} 9.0747;7.9124;7.0448;5.9618;5.9288;5.8825;5.7319;5.7319;4.761;4.6715 +;-;+;-;-;-;-;-;-;- + 320 + NaN NaN 312775.5 NaN 8487 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11174 52.832 NaN 611670 35 0 60060 0.261 + 3480 EGPTHSTFTF 10 81 562.2569738712176 1122.4993948092351 2 562.2566528320312 MULTI HCD FTMS 0 0 0 11171 218704.78125 0.9418418254676757 1 -0.03621673583984375 3 Unmodified _EGPTHSTFTF_ REV__ENSG00000184840|ENST00000332598|TMED9;REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF;REV__ENST00000507723.1_1_5:177019275-177020791:+|nuORF;REV__ENST00000513799.5_1_5:177019550-177022414:+|nuORF 68.08070601005525 0.01985953044443068 1 C(Carbamidomethyl (C))T{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5 -1 59.634 0 0 5.3126 0 0 448.2196217267594 0 448.2196217267594 0 33.09128377914654 0 0 0 1.6643943297944483 0 0.9802046884880937 0 C(Carbamidomethyl (C))T{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.3126 - 627 NaN NaN 178820.3 NaN 8488 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11175 52.835 NaN 265300 35 0 28859 0.261 -1 IPHMDIEAL 9 60 527.7666675310228 1053.5187821288455 2 527.765625 MULTI HCD FTMS 0 0 0 11171 135339.9375 0.2713894396518096 26 -0.6349945068359375 4 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 26.88365393820708 0.12808753336095696 1 {I|L}{I|L}EA{I|L} 5 -1 40.701 0 0 3.8633 0 0 496.171190330275 0 496.171190330275 0 25.21652514092061 0 0 0 0.7742275032520141 0 0 0 {I|L}{I|L}EA{I|L} 3.8633 - 154 NaN NaN 124292.1 NaN 8489 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11176 52.839 NaN 642430 35 0 60542 0.261 + 244 AFDVAEREF 9 78 542.2589204272174 1082.5032879212347 2 542.2586669921875 MULTI HCD FTMS 0 0 0 11171 169059.1875 0.38026433035931745 -3 0.07870864868164062 5 Unmodified _AFDVAEREF_ ENSG00000133816|ENST00000683283|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-2|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851|MICAL2 87.25819977447905 0.004597812622239197 1 TDVAERE{M(Oxidation (M))|F} 8 2 86.685 0 0 8.0078 0 0 117.03735882142844 0 117.03735882142844 0 57.42758657464441 0 0 0 3.2302046884880937 0 1.1694451763165201 0.3494850021680094 TDVAERE{M(Oxidation (M))|F} 8.0078 - 1987 + NaN NaN 186672.8 NaN 8490 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11177 52.842 NaN 345370 35 0 24748 0.261 + 13353 KYMPNVKVAVF 11 63 648.3626066068764 1294.7106602805527 2 648.3621215820312 MULTI HCD FTMS 0 0 0 11171 129528.46875 0.8587538209668056 -2 0.049137115478515625 6 Unmodified _KYMPNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 53.40400417844725 0.06744007266772457 1 [YK]M[VG][PG]KVAV{M(Oxidation (M))|F} 12 4 + 49.396 0 0 3.8152 3.8152 89.345 0 0 0 0.5411342943241237 28.426543971217058 0.5411342943241237 49.39564410129762 0 2 0 0 0.7614393726401688 [YK]M[VG][PG]KVAV{M(Oxidation (M))|F} 3.8152 - 137 NaN NaN 150094.6 NaN 8491 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11178 52.845 NaN 422680 35 0 31670 0.261 + 22837 QYLRVETQF 9 80 592.309349845621 1182.604146758042 2 592.3087768554688 MULTI HCD FTMS 0 0 0 11171 144628.015625 0.5013476959014814 -3 0.07870864868164062 7 Unmodified _QYLRVETQF_ ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 117.76058876431921 0.001675465467887476 1 [{M(Oxidation (M))|F}E]KRVETQ{M(Oxidation (M))|F} 9 3 + 54.757 0 0 4.6302 4.6302 81.624 0 0 0 1.7974877694112337 1.7974877694112337 1.7974877694112337 1.7974877694112337 0 1.805945812348389 0 1.1861818737241734 2.004432191740108 [{M(Oxidation (M))|F}E]KRVETQ{M(Oxidation (M))|F};[YQ]{I|L}RVETQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KRVET[AG]{M(Oxidation (M))|F};[NP]V[H{I|L}]VETQ{M(Oxidation (M))|F};[QT][WK]VE[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};[NP]VTEV[H{I|L}]Q{M(Oxidation (M))|F};[QT]{[SA]|[TG]}RVE[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};[YQ]{I|L}RV[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[TV]|[{I|L}S]}{[NV]|[RG]}{M(Oxidation (M))|F}VETQ{M(Oxidation (M))|F};[NP]VTEV[WK][NP] 4.6302;4.4782;3.8516;2.2366;2.1955;2.0587;1.9842;1.8978;1.8181;1.2358 -;+;-;-;-;-;-;-;-;- + 711 NaN NaN 156620.9 NaN 8492 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11179 52.849 NaN 144740 35 0 12260 0.262 + 5669 FPAAIEHTI 9 49 499.76894771070397 997.523342488208 2 499.7689514160156 MULTI HCD FTMS 0 0 0 11171 55491.4453125 0.07861057453975842 10 -0.2756805419921875 8 Unmodified _FPAAIEHTI_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 92.8221339359638 0.0044520161739443126 1 {M(Oxidation (M))|F}PAA{[QN]|[E{I|L}]|[KN]}HT{I|L} 9 0 + 54.196 0 0 5.4331 5.4331 91.942 0 0 0 28.278865371463056 8.256886463274284 8.256886463274284 54.196465718344555 0 2.079689690656103 0 1.610924374808178 0 + + {M(Oxidation (M))|F}PAA{[QN]|[E{I|L}]|[KN]}HT{I|L} 5.4331 + + 77 + NaN NaN 114925 NaN 8493 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11180 52.852 NaN 160960 35 0 20351 0.261 -1 ELTFRQCEN 9 46 598.7739618195502 NaN 0 598.789306640625 PEAK HCD FTMS 0 0 0 11171 17290.103515625 1 0 0 9 Carbamidomethyl (C) _ELTFRQC(Carbamidomethyl (C))EN_ ENSG00000175279|ENST00000309048|CENPS;nc|ENSG00000251503|Q8N2Z9-2|CENPS;nc|ENSG00000251503|Q8N2Z9-3|CENPS 7.608950283845883 0.2583749310551142 1 {M(Oxidation (M))|F}VH[EP]{I|L} 6 -1 14.13 0 0 1.1819 0 0 114.06093612203229 356.09250818424067 470.15344430627295 0 0 0 0 0 0 0 0.5 0 {M(Oxidation (M))|F}VH[EP]{I|L} 1.1819 - 49 + NaN NaN 112846.1 NaN 8494 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11181 52.855 NaN 69014 35 0 9634.3 0.261 -1 LPMSDQYVKL 10 34 605.3131367268371 1208.6117205204741 2 605.8150024414062 MULTI HCD FTMS 0 0 0 11171 21941.5234375 0.48289526533048877 7 -0.20023345947265625 10 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 10.799506525563784 0.4100970765206026 1 {I|L}P 2 -1 17.959 0 0 1.4859 0 0 0 995.4532564752561 995.4532564752561 4.771212547196626 0 0 0 0 0 0 0 0 {I|L}P 1.4859 + + 12 + NaN NaN 106427.3 NaN 8495 2684 11171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11183 52.86 NaN 3730000 35 0 392410 0.327 + 2568 DTIEIITDR 9 99 538.2850198497656 1074.5554867663311 2 538.28515625 MULTI HCD FTMS 0 0 0 11182 2011254.25 0.9444254072789278 1 -0.02623748779296875 1 Unmodified _DTIEIITDR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 173.68634876852585 1.8204875074637502E-09 1 {[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TDR 9 3 + 102.3 0 0 9.5203 9.5203 90.99 0 0 0 5.2203223072517915 7.109364400568836 5.2203223072517915 5.2203223072517915 0 2.805462187404089 1.154901959985743 2.6655852772434643 0 {[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TDR;{[ES]|[DT]|[{I|L}C]}{I|L}E{I|L}{I|L}TDR;[{I|L}T]DE{I|L}{I|L}TDR;{[QN]|[E{I|L}]|[KN]}DT{I|L}{I|L}TDR;{[QN]|[E{I|L}]|[KN]}SE{I|L}T{I|L}DR;{[QN]|[E{I|L}]|[KN]}ES{I|L}{I|L}TDR;{[ES]|[DT]|[{I|L}C]}{I|L}E{I|L}T{I|L}DR;[{I|L}T]DE{I|L}T{I|L}DR;{[QN]|[E{I|L}]|[KN]}{I|L}TD{I|L}TDR;{[QN]|[E{I|L}]|[KN]}DT{I|L}T{I|L}DR 9.5203;9.0344;9.002;8.1932;8.1682;8.1456;7.6824;7.6499;6.8721;6.8411 -;+;-;-;-;-;-;-;-;- + 2871 NaN NaN 642696.6 NaN 8496 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11184 52.865 NaN 681150 35 0 52538 0.261 + 35058 YTLWYHLV 8 96 547.7878325408293 1093.5611121484585 2 548.7872924804688 MULTI HCD FTMS 0 0 0 11182 246967.1875 0.4471239614471813 12 -0.31817626953125 2 Unmodified _YTLWYHLV_ REV__ENSG00000101203|ENST00000358894|COL20A1;REV__ENST00000479501.5_1_20:61943331-61950713:+|nuORF;REV__nc|ENSG00000101203|Q9P218-2|COL20A1;REV__nc|ENSG00000101203|Q9P218-3|COL20A1 15.768221252438446 0.4777766048089751 1 [YT]P{I|L}E{M(Oxidation (M))|F}DV 8 -1 52.428 0 0 4.7943 0 0 0 126.07343347213443 126.07343347213443 27.076261372202982 0 0 0 0 0.3252574989159953 1.6989700043360187 1.0484550065040281 0 [YT]P{I|L}E{M(Oxidation (M))|F}DV 4.7943 - 4225 NaN NaN 189042 NaN 8497 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11185 52.868 NaN 494420 35 0 46004 0.261 + 32364 VYVQHPITF 9 83 552.2970902373241 1102.5796275414482 2 552.297607421875 MULTI HCD FTMS 0 0 0 11182 207283.453125 0.5503997969359163 3 -0.07201004028320312 3 Unmodified _VYVQHPITF_ ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF 110.6747026088012 0.0028322563155251486 1 VYVQHP{I|L}T 8 1 89.353 0 0 8.104 0 0 0 162.05584131412346 162.05584131412346 67.67010980380633 0 0 0 0 2.8667053245199625 1.5228787452803376 1.555462187404089 0.3807196863200844 + VYVQHP{I|L}T 8.104 + + 1202 + NaN NaN 157977.8 NaN 8498 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11186 52.872 NaN 830760 35 0 244070 0.263 + 13355 KYMPNVKVAVF 11 55 432.57733325554256 1294.7101703668277 3 432.57745361328125 MULTI HCD FTMS 0 0 0 11182 224557.578125 0.8462513341469426 -1 0.03621673583984375 4 Unmodified _KYMPNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 26.268140514670165 0.22820724222159966 1 V{[QV]|[N{I|L}]|[RA]|[KV]}AV{M(Oxidation (M))|F} 6 5 46.911 0 0 3.6233 0 0 633.2936878888687 0 633.2936878888687 0 42.30713133096572 0 0 0 1.4247425010840047 0 0 0.4247425010840047 + V{[QV]|[N{I|L}]|[RA]|[KV]}AV{M(Oxidation (M))|F} 3.6233 + + 12 NaN NaN 206339.1 NaN 8499 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11187 52.875 NaN 901520 35 0 58209 0.261 -1 YYLHVQSML 9 108 585.2864453313437 1168.5583377294872 2 585.3010864257812 MULTI HCD FTMS 0 0 0 11182 63519.01171875 0.7405542019428264 -2 0.055805206298828125 5 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ ENSG00000176994|ENST00000406438|SMCR8 32.78568957990786 0.09846250359632436 1 CQN{I|L}S[H{I|L}]Q{M(Oxidation (M))|F} 9 -1 57.343 0 0 4.9072 0 0 80.02660664499906 0 80.02660664499906 0 14.206962271689747 0 0 0 0 0 0.8921590589602533 0.7302046884880937 CQN{I|L}S[H{I|L}]Q{M(Oxidation (M))|F} 4.9072 - 2797 + NaN NaN 224812.9 NaN 8500 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11188 52.878 NaN 349570 35 0 41339 0.262 + 705 APYSVDQSL 9 47 490.24027605610115 978.4659991790023 2 490.240234375 MULTI HCD FTMS 0 0 0 11182 193209.921875 0.9840801879753849 -3 0.08535385131835938 6 Unmodified _APYSVDQSL_ ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP 67.83816525789305 0.009787749748478139 1 SVDQS{I|L} 6 3 63.035 0 0 6.4422 0 0 331.1522694318375 0 331.1522694318375 0 43.5705576812229 0 0 0 2.1549471895720984 0 0.7742275032520141 0 + SVDQS{I|L} 6.4422 + + 152 NaN NaN 134409.9 NaN 8501 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11189 52.882 NaN 130360 35 0 18089 0.261 -1 0 43 424.08158163941823 NaN 0 424.0815124511719 PEAK HCD FTMS 0 0 0 11182 78469.59375 0.48597109809417577 219 -5.701732635498047 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93920.7 NaN 8502 2685 11182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11191 52.886 NaN 2653100 35 0 644110 0.327 + 15368 LPDERTISL 9 100 522.2902769954053 1042.5660010576105 2 522.2902221679688 MULTI HCD FTMS 0 0 0 11190 1661167.25 0.9681190316841295 1 -0.026165008544921875 1 Unmodified _LPDERTISL_ ENSG00000101138|ENST00000217109|CSTF1 155.95374464489888 2.532374632554729E-06 1 {I|L}PDERT{I|L}S{I|L} 9 0 + 105.1 0 0 10.081 10.081 89.046 0 0 0 15.217560556318958 0.244535715752491 0.244535715752491 0.244535715752491 0 3.1237125054200234 1.5228787452803376 2.0829743730835917 0 + + {I|L}PDERT{I|L}S{I|L};[{I|L}P]DERT{I|L}S{I|L};[{I|L}P]DERTS{I|L}{I|L};[DP]{I|L}ERT{I|L}S{I|L};[DP]{I|L}ERTS{I|L}{I|L};[{I|L}P]DERST{I|L}{I|L};[DP]E{I|L}RT{I|L}S{I|L};[{I|L}P]DT{[RE]|[WV]}{I|L}S{I|L};[DP]E{I|L}RTS{I|L}{I|L};[DP]{I|L}ERST{I|L}{I|L} 10.081;10.057;9.1622;8.7194;7.8244;7.7876;7.5913;6.8292;6.6963;6.4498 +;+;-;-;-;-;-;-;-;- + 3195 + NaN NaN 483881.4 NaN 8503 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11192 52.891 NaN 857230 35 0 159360 0.261 + 33428 YGSRLDYFQ 9 72 574.771658418407 1147.528763903614 2 574.772216796875 MULTI HCD FTMS 0 0 0 11190 206249.65625 0.21651244066155026 47 -1.1985244750976562 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 1 {[WN]|[YH]}[RP]TSVS 8 7 65.283 0 0 5.689 0 0 0 217.0610783742085 217.0610783742085 43.62781577388333 0 0 0 0 2.079689690656103 1.5228787452803376 0.3807196863200844 0.3054621874040891 {[WN]|[YH]}[RP]TSVS 5.689 - 430 NaN NaN 239253.7 NaN 8504 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11193 52.894 NaN 323980 35 0 29467 0.261 + 14327 LDPKGQPLF 9 74 507.7846986177862 1013.5548443023724 2 508.30230712890625 MULTI HCD FTMS 0 0 0 11190 15137.615234375 0.4195003272991289 3 -0.07536697387695312 3 Unmodified _LDPKGQPLF_ REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF 10.823927491677226 0.26684000660059787 1 {I|L}PD 3 -1 23.461 0 0 2.3147 0 0 0 685.3695441544265 685.3695441544265 9.4812969097282 0 0 0 0 0.5 0 0.3054621874040891 0 {I|L}PD 2.3147 - 70 + NaN NaN 135878.5 NaN 8505 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11194 52.898 NaN 386740 35 0 63715 0.261 + 1392 AYQDRLAYL 9 55 556.7904673481536 1111.566381763107 2 556.790283203125 MULTI HCD FTMS 0 0 0 11190 121446.8203125 0.5356998047933458 -2 0.0624542236328125 4 Unmodified _AYQDRLAYL_ ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF 57.72198328787511 0.020768266150574023 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[RD]{I|L}AY{I|L} 9 0 + 77.241 0 0 6.9488 6.9488 89.669 0 0 0 20.300952681517188 65.76274388132951 20.300952681517188 9.208187539523749 0 2.1549471895720984 2 0 0.3807196863200844 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[RD]{I|L}AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][RD]{I|L}AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[RD]{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][RD]{I|L}{I|L}S{M(Oxidation (M))|F} 6.9488;6.1204;5.5001;4.6717 +;-;-;- + 348 NaN NaN 141524.5 NaN 8506 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11195 52.901 NaN 307260 35 0 55823 0.261 -1 YDRTCKLW 8 70 571.2750430733626 NaN 0 571.2886962890625 PEAK HCD FTMS 0 0 0 11190 6372.62744140625 0.23135757762954698 -1 0.02623748779296875 5 Carbamidomethyl (C) _YDRTC(Carbamidomethyl (C))KLW_ ENSG00000123977|ENST00000309931|DAW1;nc|ENSG00000123977|Q8N136-2|DAW1 9.347437153973935 0.38822285293237185 1 DKV{M(Oxidation (M))|F}A{I|L} 6 -1 26.631 0 0 2.335 0 0 263.0969040592742 201.06679712467033 464.16370118394457 0 0 0 0 0 0 0 0 0 DKV{M(Oxidation (M))|F}A{I|L} 2.335 - 233 + NaN NaN 125736 NaN 8507 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11196 52.904 NaN 110110 35 0 8590.7 0.261 + -1 ESDMTMSSL 9 55 516.6962703426996 NaN 0 516.6961059570312 PEAK HCD FTMS 0 0 0 11190 21053.400390625 0.6066301525773734 1 -0.026165008544921875 6 2 Oxidation (M) _ESDM(Oxidation (M))TM(Oxidation (M))SSL_ REV__ENSG00000115165|ENST00000264192|CYTIP;REV__nc|ENSG00000115165|O60759-2|CYTIP 4.3292370932331545 0.2742679634796037 1 S 1 -1 8.9794 0 0 0.87062 0 0 131.09528619145527 810.2274874322874 941.3227736237427 0 0 0 0 0 0 0 0.3494850021680094 0 S 0.87062 + + 4 + NaN NaN 99096.8 NaN 8508 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11197 52.908 NaN 81877 35 0 9975.2 0.261 + 19438 NPQGQVDSL 9 38 479.2374700639058 NaN 0 479.24871826171875 PEAK HCD FTMS 0 0 0 11190 4820.71484375 0.2989292612909348 -1 0.02623748779296875 7 Unmodified _NPQGQVDSL_ ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 11.640296217721598 0.23883959125015683 1 VD 2 7 14.821 0 0 1.5495 0 0 524.237774745196 215.10425745181877 739.3420321970148 0 0 0 0 0 0 0 0.9247425010840047 0 + VD 1.5495 + + 24 + NaN NaN 96710.9 NaN 8509 2686 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11199 52.913 NaN 922520 35 0 169130 0.327 + 7119 FRTSYSSGPF 10 77 574.771658418407 1147.528763903614 2 574.7721557617188 MULTI HCD FTMS 0 0 0 11198 149533 0.15697361817757502 48 -1.2380714416503906 1 Unmodified _FRTSYSSGPF_ REV__ENSG00000115970|ENST00000405975|THADA;REV__ENST00000408045.7_1_2:43571220-43805671:-|nuORF;REV__nc|ENSG00000115970|Q6YHU6-2|THADA;REV__nc|ENSG00000115970|Q6YHU6-3|THADA;REV__nc|ENSG00000115970|Q6YHU6-5|THADA;REV__nc|ENSG00000115970|Q6YHU6-6|THADA 20.41453444215458 0.3201613495159799 1 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 -1 73.031 0 0 6.3642 0 0 220.08346106883795 0 220.08346106883795 0 65.8771376077312 0 0 0 2.4247425010840047 0 1.7971062485323515 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 6.3642 - 726 + NaN NaN 228369.3 NaN 8510 2687 11198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11200 52.917 NaN 321220 35 0 33645 0.261 + 9800 HYLYQIAHL 9 71 579.3086753728791 1156.602797812558 2 579.308837890625 MULTI HCD FTMS 0 0 0 11198 138915.109375 0.5043232323094806 6 -0.16080474853515625 2 Unmodified _HYLYQIAHL_ ENSG00000189091|ENST00000302516|SF3B3 74.42276476219924 0.007657080072768255 1 {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L} 9 0 + 67.048 0 0 5.797 5.797 85.194 0 0 0 6.17931555708239 6.17931555708239 6.17931555708239 5.255762612236907 0 2.024227503252014 1.5228787452803376 0 0.3494850021680094 + + {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[YQ]A{I|L}H{I|L};HY{I|L}[YQ]{I|L}AH{I|L};[H{I|L}]Y[YQ]{I|L}AH{I|L};[H{I|L}]Y[YQ]A{I|L}H{I|L};{I|L}HY[YQ]{I|L}AH{I|L};[YG][{I|L}A]{[WN]|[YH]}{I|L}AH{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{[TV]|[{I|L}S]}{[WN]|[YH]}{I|L}AH{I|L};{[RE]|[WV]}Q[YQ]{I|L}AH{I|L};[YG][{I|L}A]{[WN]|[YH]}A{I|L}H{I|L} 5.797;5.3426;5.2627;3.3752;2.9208;2.1726;2.1468;2.0398;1.8926;1.6924 +;-;+;-;-;-;-;-;-;- + 286 NaN NaN 138137.9 NaN 8511 2687 11198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11201 52.921 NaN 252950 35 0 46071 0.263 + 22542 QSEPGSIAL 9 48 451.23441827188924 900.4542836105785 2 451.23480224609375 MULTI HCD FTMS 0 0 0 11198 149008.53125 1 0 0 3 Unmodified _QSEPGSIAL_ ENSG00000027697|ENST00000367739|IFNGR1 45.69961567697781 0.039180348357221985 1 {I|L}A{I|L} 3 6 38.188 0 0 4.2409 0 0 585.2368031232437 0 585.2368031232437 0 23.58349385648225 0 0 0 1.3494850021680094 0 0 0 + {I|L}A{I|L} 4.2409 + + 57 NaN NaN 123293.6 NaN 8512 2687 11198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11202 52.924 NaN 221540 35 0 71812 0.261 + 16042 LPSEEDPAL 9 46 485.74007667601825 969.4656004188365 2 485.739990234375 MULTI HCD FTMS 0 0 0 11198 133110.25 1 0 0 4 Unmodified _LPSEEDPAL_ ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 14.838274106304384 0.23215694253501695 1 DPA{I|L} 4 5 41.938 0 0 4.3259 0 0 555.2541371076187 0 555.2541371076187 0 33.83925646871916 0 0 0 1 0 0 0 + DPA{I|L} 4.3259 + + 19 NaN NaN 125387.7 NaN 8513 2687 11198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11203 52.927 NaN 302050 35 0 49178 0.261 + 3998 ERNLAEQSSM 10 66 582.7694480443604 1163.5243431555207 2 582.768798828125 MULTI HCD FTMS 0 0 0 11198 86271.7734375 0.056742076283539465 33 -0.8181190490722656 5 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 8.155526934196011 0.43213520406898465 1 SVST[QP]Y{M(Oxidation (M))|F} 8 -1 50.94 0 0 4.3781 0 0 236.07959181953282 0 236.07959181953282 0 33.49275660196689 0 0 0 2.3807196863200843 0 0.3054621874040891 0 SVST[QP]Y{M(Oxidation (M))|F} 4.3781 - 296 NaN NaN 133614.3 NaN 8514 2687 11198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11205 52.932 NaN 1726800 35 0 357380 0.327 + 15486 LPDMVVSHL 9 100 513.7679631974995 1025.521373461799 2 513.7681884765625 MULTI HCD FTMS 0 0 0 11204 833007.875 0.5150809706742071 10 -0.26906585693359375 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 136.33342141710068 0.00022087650154924235 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 111.74 0 0 10.896 10.896 96.804 0 0 0 81.05265951879792 10.642492736872597 10.642492736872597 16.67386725077307 0 2.973197507588033 1.3979400086720375 1.3411290632962718 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}[TA]{I|L}H{I|L};[{I|L}P]D{M(Oxidation (M))|F}[TA]H{I|L}{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L} 10.896;9.2697;6.9538;6.6653;6.1342;6.0124;5.7966;5.5597;5.4749;5.3531 +;+;-;-;-;-;-;-;-;- + 2246 + NaN NaN 345735 NaN 8515 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11206 52.937 NaN 850180 35 0 217130 0.261 + 29695 VCSILRIRTS 10 82 574.336295199105 NaN 0 574.3167724609375 PEAK HCD FTMS 0 0 0 11204 9650.0087890625 1 0 0 2 Unmodified _VCSILRIRTS_ ENSG00000182634|ENST00000641585|OR10G7;ENSG00000234560|ENST00000641224|OR10G8;ENSG00000254737|ENST00000641722|OR10G4;OR10G8|p.I220T|1|0.7|ENSG00000234560|chr11:124030281-124030281|T/C|missense_variant 6.723162845929126 0.3344301934401713 1 SVST{M(Oxidation (M))|F}VS 7 8 30.948 0 0 2.699 0 0 219.21289563315275 217.06177698306877 436.27467261622155 0 0 0 0 0 0 0 0.6747425010840047 0 SVST{M(Oxidation (M))|F}VS 2.699 - 531 + NaN NaN 215884.8 NaN 8516 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11207 52.94 NaN 226410 35 0 45328 0.261 + 35774 YYMKDLPTSF 10 58 640.7971275494345 1279.579702165669 2 640.79736328125 MULTI HCD FTMS 0 0 0 11204 112567.546875 0.6826676705967256 2 -0.059108734130859375 3 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 63.227496030279354 0.029684053017782965 1 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}PTS{M(Oxidation (M))|F} 10 0 + 74.614 0 0 5.8312 5.8312 89.837 0 0 0 0.796896906561031 0.796896906561031 0.796896906561031 14.420302097736162 0 2.548455006504028 2 0.8494850021680094 0 + + YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}PTS{M(Oxidation (M))|F};YY{[MG]|[TS]}{[DS]|[MA]|[CV]|TT}{I|L}PTS{M(Oxidation (M))|F} 5.8312;4.7042 +;- + 146 + NaN NaN 116697.2 NaN 8517 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11208 52.944 NaN 418430 35 0 60641 0.261 -1 RKMRNEEF 8 73 563.2765860851016 1124.538619237003 2 563.7923583984375 MULTI HCD FTMS 0 0 0 11204 21535.73828125 1 0 0 4 Oxidation (M) _RKM(Oxidation (M))RNEEF_ tr|U7T0X0|U7T0X0_FUSNUPutativeseptationproteinSpoVGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=spoVGPE=3SV=1 14.581692164780916 0.48650662947107914 1 {I|L}AVYEE{M(Oxidation (M))|F} 7 -1 44.531 0 0 3.96 0 0 255.12310517625934 0 255.12310517625934 0 12.640143618001218 0 0 0 0 0 1.086696871556164 0 {I|L}AVYEE{M(Oxidation (M))|F} 3.96 - 385 + NaN NaN 146556.6 NaN 8518 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11209 52.947 NaN 566020 35 0 82740 0.261 + 25118 SAFPEVRSL 9 80 503.2720599968899 1004.5295670605798 2 503.2718505859375 MULTI HCD FTMS 0 0 0 11204 116865.2109375 0.647844584310523 -2 0.045772552490234375 5 Unmodified _SAFPEVRSL_ ENSG00000115970|ENST00000405975|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 24.881564428377168 0.14538514251145815 1 {[SA]|[TG]}{M(Oxidation (M))|F}[EP]VRS{I|L} 9 0 + 22.782 0 0 2.2679 2.2679 79.782 0 0 0 8.489853770435335 0.6281005654287277 0.6281005654287277 2.2387006458147596 0 1.8098943791441968 0 0 0 + + {[SA]|[TG]}{M(Oxidation (M))|F}[EP]VRS{I|L};{[SA]|[TG]}{M(Oxidation (M))|F}[RV]EPS{I|L};V{[MS]|[{M(Oxidation (M))|F}A]}[DV]VRS{I|L} 2.2679;2.045;0.16699 +;-;- + 254 + NaN NaN 178167.8 NaN 8519 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11210 52.95 NaN 73601 35 0 7424.9 0.261 + 16567 LVCDEIYNIK 10 45 605.3131367268371 1208.6117205204741 2 605.312744140625 MULTI HCD FTMS 0 0 0 11204 24355.27734375 0.3501921325840642 8 -0.219970703125 6 Unmodified _LVCDEIYNIK_ ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 8.155526934196011 0.43213520406898465 1 MV 2 9 11.454 0 0 0.94767 0 0 259.18724124509146 716.2699679010374 975.4572091461289 0 0 0 0 0 0.5 0 0 0 MV 0.94767 - 13 + NaN NaN 93651.9 NaN 8520 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11211 52.954 NaN 169890 35 0 12920 0.262 + 30882 VQPSSFQNI 9 61 510.2614168184703 1018.5082807037406 2 510.26141357421875 MULTI HCD FTMS 0 0 0 11204 70466.4140625 0.637727648743239 -3 0.07201004028320312 7 Unmodified _VQPSSFQNI_ chr15:40873436-40873684|119|13.16|0.29|5.49|-|1|None,RHOV|1;ENSG00000104140|ENST00000220507|RHOV 37.07464296494664 0.07877380486334713 1 {[QV]|[N{I|L}]|[RA]|[KV]}[PS]S{M(Oxidation (M))|F}QN{I|L} 9 0 + 41.857 0 0 4.1097 4.1097 81.018 0 0 0 5.698624670292887 26.399699876253777 5.698624670292887 2.2184874961635543 0 2.048455006504028 0 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}[PS]S{M(Oxidation (M))|F}QN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YT][PG]QN{I|L} 4.1097;3.8918 +;- + 95 NaN NaN 106871.6 NaN 8521 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11212 52.957 NaN 135860 35 0 7952 0.261 + -1 MDSFYHQSF 9 57 589.2348654479254 1176.4551779626506 2 589.235107421875 MULTI HCD FTMS 0 0 0 11204 40701.859375 1 0 0 8 Oxidation (M) _M(Oxidation (M))DSFYHQSF_ REV__ENST00000373616.9_1_6:36935956-36936193:-|nuORF 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.5239 0 0 777.2729969709 0 777.2729969709 0 19.235162698957282 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.5239 - 41 NaN NaN 116023.2 NaN 8522 2688 11204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11214 52.962 NaN 1656200 35 0 295990 0.326 + 21153 PPPFISAQIP 10 101 533.8016319833379 NaN 0 533.7879028320312 PEAK HCD FTMS 0 0 0 11213 42289.12109375 0.777546127863714 2 -0.062412261962890625 1 Unmodified _PPPFISAQIP_ REV__ENSG00000149506|ENST00000278853|ZP1 21.536976647645854 0.26818477760186155 1 P 1 -1 5.4846 0 0 0.5147 0 0 291.14982866469376 674.3635510911738 965.5133797558676 0 0 0 0 0 0 0 0 0 P 0.5147 + + 63 + NaN NaN 335135.7 NaN 8523 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11215 52.966 NaN 1254800 35 0 180790 0.261 + 17938 MITDLEERL 9 100 568.2867843198294 1134.5590157064587 2 568.2867431640625 MULTI HCD FTMS 0 0 0 11213 520189.65625 0.46179826706798877 -10 0.2656745910644531 2 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 125.0377797344192 0.0009059125702818869 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 112.45 0 0 9.9112 9.9112 89.493 0 0 0 21.980275741115975 68.58177219536469 21.980275741115975 1.3377830042433771 0 2.9247425010840047 1.6989700043360187 1.8586856641449465 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{I|L}{M(Oxidation (M))|F}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}[{I|L}A][NG][TA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]{I|L}D[NG][TA];{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DT{I|L}E;{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]TE{I|L} 9.9112;9.7933;8.7617;7.6787;7.4443;5.3707;5.2092;5.1088;4.3391;2.9422 +;-;-;-;+;-;-;-;-;- + 3100 NaN NaN 279075.3 NaN 8524 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11216 52.97 NaN 259480 35 0 18853 0.261 -1 LHWCIMTF 8 63 562.2569738712176 1122.4993948092351 2 562.7582397460938 MULTI HCD FTMS 0 0 0 11213 33638.29296875 0.21981354169793585 6 -0.1674957275390625 3 Carbamidomethyl (C),Oxidation (M) _LHWC(Carbamidomethyl (C))IM(Oxidation (M))TF_ ENSG00000206579|ENST00000327381|XKR4;XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant 20.871210003555333 0.44023077629866025 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 40.005 0 0 3.5639 0 0 709.3027855206401 0 709.3027855206401 0 19.035984316004217 0 0 0 1 0 0.3807196863200844 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.5639 + + 72 NaN NaN 122513.5 NaN 8525 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11217 52.973 NaN 83991 35 0 9478.6 0.261 + 31371 VYADQPHIF 9 47 545.2720286556864 1088.5295043781728 2 545.2718505859375 MULTI HCD FTMS 0 0 0 11213 19385.92578125 0.043809512930576056 22 -0.5199851989746094 4 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 14.838274106304384 0.23215694253501695 1 [YV]T 3 7 33.952 0 0 3.1191 0 0 0 722.3336886041624 722.3336886041624 9.911356165197844 0 0 0 0 0.3494850021680094 2 0 0 [YV]T 3.1191 - 68 + NaN NaN 97283.8 NaN 8526 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11218 52.976 NaN 213540 35 0 36135 0.261 -1 FPFYDKPM 8 62 530.7439544869034 1059.4733560406066 2 530.7445678710938 MULTI HCD FTMS 0 0 0 11213 24166.896484375 0.5808832483658823 8 -0.21657180786132812 5 Oxidation (M) _FPFYDKPM(Oxidation (M))_ ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF 19.256988751693697 0.45210759540527456 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}NY{M(Oxidation (M))|F}PE 8 -1 + 51.324 0 0 4.8443 4.8443 86.744 0 0 0 15.846303270046889 46.37517525248825 15.846303270046889 9.262137858390815 0 0 1.3979400086720375 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}NY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}GGY{M(Oxidation (M))|F}PE 4.8443;3.97 -;- 74 NaN NaN 110771.8 NaN 8527 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11219 52.98 NaN 50920 35 0 5524.3 0.261 + 25588 SFVGWFLGWD 10 37 607.2861696717823 1212.5577864103645 2 607.2872924804688 MULTI HCD FTMS 0 0 0 11213 24977.849609375 0.37909036636004256 28 -0.6870536804199219 6 Unmodified _SFVGWFLGWD_ CON__Q3SX14;ENSG00000148180|ENST00000432226|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396|GSN 3.5964929083625545 0.45626689593999237 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 3 8 27.447 0 0 2.2636 0 0 0 861.3952611588517 861.3952611588517 22.84318117920506 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 2.2636 - 3 + NaN NaN 95638.4 NaN 8528 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11220 52.983 NaN 55724 35 0 4843 0.261 -1 ALWLGCCLCF 10 34 621.7775268554688 NaN 0 621.7775268554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C) _ALWLGC(Carbamidomethyl (C))C(Carbamidomethyl (C))LCF_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 1.844237919475145 0.33860587697544825 1 TNQ 3 -1 26.682 0 0 2.1509 0 0 165.0803889252614 729.2803438775999 894.3607328028613 0 0 0 0 0 1 0 0.5 0 TNQ 2.1509 - 9 + NaN NaN 99331.2 NaN 8529 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11221 52.986 NaN 45420 35 0 3653.5 0.261 -1 KEKMKIERAH 10 31 643.3560180664062 NaN 0 643.3560180664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _KEKM(Oxidation (M))KIERAH_ ENSG00000126524|ENST00000246868|SBDS;ENST00000415772.5_1_7:72302228-72304559:+|nuORF;ENST00000490953.5_1_7:66456072-66459281:-|nuORF 1.4819007175156935 0.33891598740166873 1 M 1 -1 6.9897 0 0 0.54539 0 0 675.2534356427749 472.27143274478755 1147.5248683875625 0 0 0 0 0 0 0 0 0 M 0.54539 + + 3 + NaN NaN 102304.2 NaN 8530 2689 11213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11223 52.991 NaN 1099900 35 0 73790 0.327 + 245 AFDVAEREF 9 102 542.2589204272174 1082.5032879212347 2 542.2590942382812 MULTI HCD FTMS 0 0 0 11222 271229.15625 0.6100749388454794 3 -0.08208847045898438 1 Unmodified _AFDVAEREF_ ENSG00000133816|ENST00000683283|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-2|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851|MICAL2 69.33821966488729 0.009302356455414924 1 {[MS]|[{M(Oxidation (M))|F}A]}DVAERE{M(Oxidation (M))|F} 9 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 73.625 2.8432 1.3036 6.8014 6.8014 64.754 0 0 0 0 33.45516025450024 0 0 0 3.110924374808178 0 0.805462187404089 0.2302046884880938 + + {[MS]|[{M(Oxidation (M))|F}A]}DVAERE{M(Oxidation (M))|F} 6.8014 + + 3374 + NaN NaN 247524.8 NaN 8531 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11224 52.996 NaN 688650 35 0 181780 0.261 + 16381 LSFRKGETI 9 82 525.8007383729025 1049.586923812605 2 526.2869873046875 MULTI HCD FTMS 0 0 0 11222 9393.4912109375 0.05079389080178574 13 -0.3144035339355469 2 Unmodified _LSFRKGETI_ REV__MROH9|p.V381I|1|0.17|ENSG00000117501|chr1:170992276-170992276|G/A|missense_variant 18.1463463914782 0.20357593197100715 1 DSKVTQ{I|L} 7 -1 42.797 0 0 4.0775 0 0 260.15217856586474 0 260.15217856586474 0 13.341991795932557 0 0 0 0 0 0.75 0.3807196863200844 DSKVTQ{I|L} 4.0775 - 562 NaN NaN 196444.3 NaN 8532 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11225 52.999 NaN 410700 35 0 81487 0.261 + 11103 IYIAGHPAF 9 66 494.76624313452044 987.5179333358409 2 494.7662658691406 MULTI HCD FTMS 0 0 0 11222 173855.6875 0.19698701030153976 8 -0.20995712280273438 3 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 79.93452657146344 0.0058735632865073864 1 {I|L}Y{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F} 9 0 + 75.155 0 0 7.6105 7.6105 87.142 0 0 0 19.26477176880759 2.5578094971178444 2.5578094971178444 2.5578094971178444 0 2.2302046884880937 1.6989700043360187 0 0 + + {I|L}Y{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F};{I|L}Y{I|L}A{[HG]|PP}{M(Oxidation (M))|F}[PA];{I|L}Y{I|L}[HQ][PA]{M(Oxidation (M))|F};{I|L}Y{I|L}[HQ]{M(Oxidation (M))|F}[PA];[Y{I|L}]{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HQ][PA]{M(Oxidation (M))|F};[Y{I|L}]A{I|L}{[HG]|PP}[PA]{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L}{[HG]|PP}[PA]{M(Oxidation (M))|F};{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{[HG]|PP}{M(Oxidation (M))|F}[PA] 7.6105;7.3515;6.5244;6.2654;5.6542;4.7968;4.597;3.7858;2.3929 +;-;-;-;+;-;-;-;- + 343 + NaN NaN 143295.8 NaN 8533 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11226 53.003 NaN 321510 35 0 22542 0.261 + 22838 QYLRVETQF 9 69 592.309349845621 1182.604146758042 2 592.3088989257812 MULTI HCD FTMS 0 0 0 11222 144049.15625 0.49934110117187036 3 -0.08208847045898438 4 Unmodified _QYLRVETQF_ ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 96.93554129104106 0.004344229100022454 1 [YQ]{I|L}RVETQ{M(Oxidation (M))|F} 9 0 + 39.485 0 0 3.3388 3.3388 86.934 0 0 0 13.124693683041507 2.243012119929098 2.243012119929098 17.895906230238133 0 1.4718487496163561 0 0 0.6861818737241735 + + [YQ]{I|L}RVETQ{M(Oxidation (M))|F};[QT]{[SA]|[TG]}RVE[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};[QT][WK]VE[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};[YQ]{I|L}RV[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.3388;1.8256;1.6767;0.69962 +;-;-;- + 444 + NaN NaN 130930.1 NaN 8534 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11227 53.006 NaN 329810 35 0 38791 0.261 + 10588 IPMDPEHVEL 10 68 598.2868973092245 1194.559241685249 2 598.286865234375 MULTI HCD FTMS 0 0 0 11222 159501.453125 1 0 0 5 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 55.50274090549119 0.0577772802216 1 {I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L} 10 0 + 60.155 0 0 5.0358 5.0358 91.463 0 0 0 50.6914468044949 7.8744678127529255 7.8744678127529255 60.15539695625556 0 2.1549471895720984 0 1.274227503252014 0 + + {I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L} 5.0358 + + 191 + NaN NaN 130871.7 NaN 8535 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11228 53.009 NaN 252910 35 0 29732 0.262 -1 KEVTCREM 8 62 506.2340287992694 1010.4535046653389 2 506.736572265625 MULTI HCD FTMS 0 0 0 11222 112440.125 0.6728193229647152 -6 0.16733551025390625 6 Oxidation (M) _KEVTCREM(Oxidation (M))_ ENST00000280612.9_1_4:139163102-139163234:-|nuORF 12.531546534597751 0.5015908124873912 1 TASETT 6 -1 37.797 0 0 3.7406 0 0 62.99542464574649 354.18256555728755 417.177990203034 0 0 0 0 0 0 0 1.2302046884880937 0 TASETT 3.7406 - 207 + NaN NaN 114882.4 NaN 8536 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11229 53.013 NaN 99120 35 0 10111 0.261 -1 MPMQDIKMIL 10 43 634.3076417024556 NaN 0 634.3038330078125 PEAK HCD FTMS 0 0 0 11222 35613.6015625 0.8697552925378491 1 -0.03289794921875 7 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.897010918128616 0.3359931263921593 1 PK 2 -1 12.206 0 0 0.9637 0 0 294.1676993211236 744.2694185846311 1038.4371179057548 0 0 0 0 0 0.2742275032520141 0 0 0 PK 0.9637 - 8 + NaN NaN 103589.8 NaN 8537 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11230 53.016 NaN 151670 35 0 7149.5 0.261 -1 HYSENMFSF 9 68 589.2348654479254 1176.4551779626506 2 589.2335815429688 MULTI HCD FTMS 0 0 0 11222 23415.9140625 0.5753033011775031 2 -0.05915069580078125 8 Oxidation (M) _HYSENM(Oxidation (M))FSF_ ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF;nc|ENSG00000113407|P26639-2|TARS1 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 -1 33.812 0 0 2.8741 0 0 777.2720204084 0 777.2720204084 0 22.129843661361406 0 0 0 1 0 0 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.8741 + + 140 NaN NaN 108957.9 NaN 8538 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11231 53.019 NaN 56578 35 0 5211.2 0.264 + 30148 VGPRVRGH 8 40 439.25791159825917 NaN 0 439.2487487792969 PEAK HCD FTMS 0 0 0 11222 4770.91796875 0.87797233681407 -1 0.029514312744140625 9 Unmodified _VGPRVRGH_ REV__ENST00000603175.1_1_2:74730086-74730338:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94840.3 NaN 8539 2690 11222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11233 53.024 NaN 1286800 35 0 191730 0.327 + 15554 LPDQPPYHL 9 91 540.2797881864748 1078.5450234397495 2 540.2797241210938 MULTI HCD FTMS 0 0 0 11232 611671.0625 0.585576633171166 -4 0.11161422729492188 1 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 126.56589448801843 0.0008132384440316759 1 {I|L}PDQ[TA]{I|L}Q 8 5 85.029 0 0 7.8837 0 0 0 209.05683313541252 209.05683313541252 57.97409034739771 0 0 0 0 0.805462187404089 1.5228787452803376 1.5356668758921828 0.8252574989159953 {I|L}PDQ[TA]{I|L}Q 7.8837 - 3767 + NaN NaN 291743.3 NaN 8540 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11234 53.029 NaN 631670 35 0 42270 0.261 -1 YYLHVQSML 9 86 585.2864453313437 1168.5583377294872 2 585.301025390625 MULTI HCD FTMS 0 0 0 11232 35905.41796875 0.41861337936122633 4 -0.10508346557617188 2 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ ENSG00000176994|ENST00000406438|SMCR8 29.081581746732265 0.1154664336125038 1 T{I|L}S[VP]{[TV]|[{I|L}S]}NQ{M(Oxidation (M))|F} 10 -1 39.592 0 0 3.3881 0 0 63.997006191387364 0 63.997006191387364 0 18.95796166923518 0 0 0 0.28872548999643577 0 1.305462187404089 0.7302046884880937 T{I|L}S[VP]{[TV]|[{I|L}S]}NQ{M(Oxidation (M))|F} 3.3881 - 826 + NaN NaN 188946.2 NaN 8541 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11235 53.032 NaN 288990 35 0 21441 0.261 + -1 IMASKLSALF 10 84 548.8058114818883 1095.5970700305766 2 548.7876586914062 MULTI HCD FTMS 0 0 0 11232 18962.37890625 1 0 0 3 Oxidation (M) _IM(Oxidation (M))ASKLSALF_ REV__ENSG00000116786|ENST00000375799|PLEKHM2;REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 9.38312468134398 0.42334543440173333 1 [YT]{I|L}[EP]{M(Oxidation (M))|F}DV 8 -1 37.642 0 0 3.4357 0 0 0 128.11110552775145 128.11110552775145 19.73705952196511 0 0 0 0 0 2 0.6549471895720984 0 [YT]{I|L}[EP]{M(Oxidation (M))|F}DV 3.4357 - 398 NaN NaN 126272.8 NaN 8542 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11236 53.036 NaN 133970 35 0 13365 0.261 + 706 APYSVDQSL 9 47 490.24027605610115 978.4659991790023 2 490.24029541015625 MULTI HCD FTMS 0 0 0 11232 85890.3125 0.4374669481257175 3 -0.07544708251953125 4 Unmodified _APYSVDQSL_ ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP 45.69961567697781 0.039180348357221985 1 DQS{I|L} 4 5 49.993 0 0 5.1093 0 0 517.2531186074274 0 517.2531186074274 0 49.992822134202015 0 0 0 1 0 0.4247425010840047 0.3807196863200844 + DQS{I|L} 5.1093 + + 9 NaN NaN 103056.1 NaN 8543 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11237 53.039 NaN 273800 35 0 68453 0.261 + 30011 VFPDKGYSF 9 72 530.2610228193264 1058.5074927054527 2 530.2609252929688 MULTI HCD FTMS 0 0 0 11232 67692.0234375 0.1323542593471546 -18 0.5055007934570312 5 Unmodified _VFPDKGYSF_ ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1 13.90604991867851 0.24021115267848145 1 NN 2 9 25.969 0 0 2.4534 0 0 812.3705551623473 0 812.3705551623473 0 2.358542919324762 0 0 0 0.5 0 0 0 NN 2.4534 - 100 NaN NaN 119330.2 NaN 8544 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11238 53.042 NaN 174030 35 0 10469 0.261 + 13354 KYMPNVKVAVF 11 56 648.3626066068764 1294.7106602805527 2 648.3634643554688 MULTI HCD FTMS 0 0 0 11232 21605.625 0.1432419699096145 5 -0.12796401977539062 6 Unmodified _KYMPNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 15.248480904072842 0.3242218977034194 1 V{M(Oxidation (M))|F} 2 9 20.969 0 0 1.6196 0 0 1030.563768455275 0 1030.563768455275 0 19.3753063169585 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.6196 + + 7 NaN NaN 107628.4 NaN 8545 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11239 53.046 NaN 105360 35 0 8610 0.264 + 6815 FPSLHTPLS 9 52 499.76894771070397 997.523342488208 2 499.7690124511719 MULTI HCD FTMS 0 0 0 11232 24510.728515625 0.03472251335589722 17 -0.3992271423339844 7 Unmodified _FPSLHTPLS_ REV__ENST00000375789.6_1_6:31697350-31697545:-|nuORF;REV__ENST00000416410.5_3_6:31696977-31697521:-|nuORF 12.531546534597751 0.2520865569484384 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AN 4 -1 20.01 0 0 2.006 0 0 0 565.2840670221311 565.2840670221311 6.9112251007275916 0 0 0 0 0 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AN 2.006 - 30 + NaN NaN 97404.6 NaN 8546 2691 11232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11241 53.051 NaN 682660 35 0 153270 0.327 + 15369 LPDERTISL 9 86 522.2902769954053 1042.5660010576105 2 522.2903442382812 MULTI HCD FTMS 0 0 0 11240 357673.1875 0.20844994382225876 7 -0.1769866943359375 1 Unmodified _LPDERTISL_ ENSG00000101138|ENST00000217109|CSTF1 78.06048673739656 0.006479972202176041 1 [{I|L}P]DERT{I|L}S{I|L} 9 0 + 79.568 0 0 7.6319 7.6319 91.583 0 0 0 18.121374995494293 42.48437490315002 18.121374995494293 9.260912590556813 0 1.8494850021680094 1.6989700043360187 0.9291746928241127 0 + + [{I|L}P]DERT{I|L}S{I|L};[{I|L}P]DERTS{I|L}{I|L};[DP]{I|L}ERT{I|L}S{I|L};[DP]{I|L}ERTS{I|L}{I|L};[DP]E{I|L}RT{I|L}S{I|L};{[TV]|[{I|L}S]}{[QG]|[NA]}[QP]T{I|L}S{I|L};[DP]E{I|L}RTS{I|L}{I|L};[DP]ER{I|L}T{I|L}S{I|L};{[TV]|[{I|L}S]}{[QG]|[NA]}[QT]P{I|L}S{I|L};[{I|L}T][NG][QP]T{I|L}S{I|L} 7.6319;6.7436;5.7638;4.8755;4.8346;3.9714;3.9463;3.9336;3.8025;3.3297 +;-;-;-;-;-;-;-;-;- + 828 NaN NaN 191236.3 NaN 8547 2692 11240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11242 53.055 NaN 278820 35 0 42560 0.261 + 1393 AYQDRLAYL 9 59 556.7904673481536 1111.566381763107 2 556.7904052734375 MULTI HCD FTMS 0 0 0 11240 117261.0625 0.5172365001362236 4 -0.10171127319335938 2 Unmodified _AYQDRLAYL_ ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF 51.629811660486645 0.02929079705179888 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]N{I|L}SE{I|L} 9 5 + 59.915 0 0 5.3902 5.3902 86.91 0 0 0 20.787020308453265 36.779294763922714 20.787020308453265 9.208187539523749 0 0.7396518287104438 2 1.1549471895720984 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]N{I|L}SE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]GG{I|L}SE{I|L} 5.3902;4.5618 -;- 210 NaN NaN 134198.4 NaN 8548 2692 11240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11243 53.059 NaN 433760 35 0 23279 0.261 -1 0 68 603.3049920617946 1806.8931467855837 3 603.6395874023438 MULTI HCD FTMS 0 0 0 11240 132917.90625 0.9410698138225789 1 -0.022937774658203125 3 NaN NaN 1 VD{I|L}{M(Oxidation (M))|F}E{[WN]|[YH]}MAAV{[{M(Oxidation (M))|F}H]|[RQ]} 13 -1 60.024 0 0 3.322 0 0 229.115675308638 0 229.115675308638 0 25.410038372652608 0 0 0 0 0 0.3494850021680094 0.3054621874040891 VD{I|L}{M(Oxidation (M))|F}E{[WN]|[YH]}MAAV{[{M(Oxidation (M))|F}H]|[RQ]} 3.322 - 1023 + NaN NaN 147460.7 NaN 8549 2692 11240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11244 53.062 NaN 390110 35 0 73454 0.261 + 8553 HASDVLENAF 10 60 551.761980561539 1101.5094081898778 2 551.7619018554688 MULTI HCD FTMS 0 0 0 11240 108866.71875 0.7825896500037347 2 -0.0491943359375 4 Unmodified _HASDVLENAF_ ENSG00000113384|ENST00000265070|GOLPH3 40.23920728925047 0.14333095755487663 1 {I|L}ENA{M(Oxidation (M))|F} 5 5 59.993 0 0 5.4464 0 0 509.2213307111344 0 509.2213307111344 0 48.566147098514705 0 0 0 2.079689690656103 0 0 0.4247425010840047 + {I|L}ENA{M(Oxidation (M))|F} 5.4464 + + 156 NaN NaN 139426.4 NaN 8550 2692 11240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11245 53.065 NaN 306550 35 0 19735 0.261 -1 MALFQHLTCV 10 73 589.7872843804672 1177.5600158277343 2 589.803466796875 MULTI HCD FTMS 0 0 0 11240 20041.2109375 0.4644517919942526 12 -0.2747993469238281 5 Oxidation (M) _M(Oxidation (M))ALFQHLTCV_ ENSG00000023445|ENST00000263464|BIRC3 20.41453444215458 0.3201613495159799 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}CHK{M(Oxidation (M))|F}{I|L}AE 10 -1 + 59.117 0 0 5.0203 5.0203 88.009 0 0 0 11.134541343817759 17.395030575842526 11.134541343817759 12.552725051033065 0 0 0 1.6421590589602533 0 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}CHK{M(Oxidation (M))|F}{I|L}AE;{[WT]|[RM]}{M(Oxidation (M))|F}HK{M(Oxidation (M))|F}{I|L}AE;[WH]{M(Oxidation (M))|F}TK{M(Oxidation (M))|F}{I|L}AE;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}CHKE{I|L}A{M(Oxidation (M))|F};{M(Oxidation (M))|F}A{I|L}E[HK]W[{M(Oxidation (M))|F}T];{[MS]|[{M(Oxidation (M))|F}A]}{I|L}CHK{M(Oxidation (M))|F}{[CP]|[EA]}{I|L};[WH][KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}AE;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}HGT{M(Oxidation (M))|F};[WH][KT]E{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[WT]|[RM]}[HK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}AE 5.0203;3.9543;3.9251;3.9094;3.7218;3.1913;3.1857;3.0695;2.951;2.9301 -;-;-;-;-;-;-;-;-;- 626 NaN NaN 133292 NaN 8551 2692 11240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11246 53.069 NaN 128850 35 0 39499 0.262 + 33037 YCQPTCCR 8 43 487.18787902544204 972.3612051176841 2 487.18798828125 MULTI HCD FTMS 0 0 0 11240 44534.30859375 0.8614333750470167 1 -0.022937774658203125 6 Unmodified _YCQPTCCR_ ENSG00000244537|ENST00000377726|KRTAP4-2 0.7936320650641473 0.540814922690045 1 Y 1 7 1.7827 0 0 0.18334 0 0 539.1937379319404 267.0846041315063 806.2783420634466 0 0 0 0 0 0 0 0 0 + Y 0.18334 + + 9 + NaN NaN 107400.2 NaN 8552 2692 11240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11248 53.073 NaN 1125300 35 0 219860 0.327 + 15487 LPDMVVSHL 9 89 513.7679631974995 1025.521373461799 2 513.7681884765625 MULTI HCD FTMS 0 0 0 11247 478852.84375 0.2960932242913723 15 -0.35003662109375 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 111.28704002717404 0.0027322905094575235 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 107.32 0 0 10.465 10.465 95.301 0 0 0 83.15044357464103 10.642492736872597 10.642492736872597 10.804074772359016 0 2.973197507588033 1.5228787452803376 0.7742275032520141 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}[TA]{I|L}H{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}V[HS]V{I|L};[{I|L}P]D{M(Oxidation (M))|F}[TA]H{I|L}{I|L};[{I|L}P]D[MT]S{I|L}H{I|L} 10.465;9.4111;7.1002;6.8515;6.2903;5.8764;5.7819;5.656;5.462;5.4147 +;+;-;-;-;-;-;-;-;- + 1555 + NaN NaN 261361 NaN 8553 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11249 53.078 NaN 1077500 35 0 314160 0.261 + 9831 HYPLTTLRF 9 82 574.3166670891638 NaN 0 574.3167724609375 PEAK HCD FTMS 0 0 0 11247 412512 1 0 0 2 Unmodified _HYPLTTLRF_ ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF 23.789781309258295 0.16196040133829917 1 SVST{M(Oxidation (M))|F}VS 7 8 28.141 0 0 2.4542 0 0 219.17344790936107 217.0619295709594 436.2353774803205 0 0 0 0 0 0 0 0.7742275032520141 0 SVST{M(Oxidation (M))|F}VS 2.4542 - 201 + NaN NaN 261550.7 NaN 8554 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11250 53.081 NaN 463740 35 0 45637 0.261 + 24137 RYCVQLSQI 9 73 555.2925969675762 1108.5706410019523 2 555.2918701171875 MULTI HCD FTMS 0 0 0 11247 189149.0625 0.43440840520698415 -3 0.08208847045898438 3 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 63.960520009940105 0.0120409805053046 1 Q{I|L}SQ{I|L} 5 4 65.701 0 0 5.9266 0 0 521.241991111525 0 521.241991111525 0 53.253800256993955 0 0 0 1.9247425010840047 0 0.8494850021680094 0 + Q{I|L}SQ{I|L} 5.9266 + + 236 NaN NaN 158749.8 NaN 8555 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11251 53.085 NaN 241900 35 0 16767 0.261 + 9079 HPFFKDMSL 9 73 561.2759590945816 1120.537365255963 2 561.2762451171875 MULTI HCD FTMS 0 0 0 11247 111646.21875 0.44874209041414337 12 -0.2747459411621094 4 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 16.149105407346934 0.22083165093524068 1 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.7842 0 0 0 736.3347171438743 736.3347171438743 23.640486284209636 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.7842 + + 158 + NaN NaN 129469.8 NaN 8556 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11252 53.088 NaN 446210 35 0 101860 0.261 + 3150 EASPVEPQL 9 52 485.24806842239076 968.4815839115815 2 485.24798583984375 MULTI HCD FTMS 0 0 0 11247 109615.2734375 0.13024407000861216 -6 0.16080474853515625 5 Unmodified _EASPVEPQL_ ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 36.12702656103203 0.08312389501731911 1 A{M(Oxidation (M))|F}PQ{I|L} 5 5 22.123 0 0 2.2843 0 0 394.187303611525 0 394.187303611525 0 17.518572025801546 0 0 0 0.7429928190999391 0 0 0 A{M(Oxidation (M))|F}PQ{I|L} 2.2843 - 40 NaN NaN 153384.1 NaN 8557 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11253 53.091 NaN 240050 35 0 48371 0.261 + 298 AFPASFSSLHF 11 55 404.20102689401216 1209.5812512822365 3 404.5354309082031 MULTI HCD FTMS 0 0 0 11247 27451.931640625 0.4500063072777661 -2 0.049190521240234375 6 Unmodified _AFPASFSSLHF_ REV__ENST00000247655.3_1_5:85913768-85915209:+|nuORF;REV__ENST00000511472.5_1_5:85913768-85915283:+|nuORF 14.218169984304629 0.3331990305275193 1 A{M(Oxidation (M))|F}{I|L} 3 -1 30.445 0 0 2.517 0 0 0 875.370066159681 875.370066159681 9.47621246364342 0 0 0 0 0.4247425010840047 0 0 0 A{M(Oxidation (M))|F}{I|L} 2.517 - 20 + NaN NaN 128892.9 NaN 8558 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11254 53.095 NaN 49342 35 0 4133 0.261 -1 YWMHVQNTF 9 32 621.2742770691075 NaN 0 621.274169921875 PEAK HCD FTMS 0 0 0 11247 14982.5390625 0.3884635286189189 3 -0.07877349853515625 7 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 4.3292370932331545 0.2742679634796037 1 NQ 2 -1 8.5835 0 0 0.69192 0 0 266.1294734723961 729.2797945611936 995.4092680335898 0 0 0 0 0 0 0 0 0 NQ 0.69192 - 8 + NaN NaN 91897.9 NaN 8559 2693 11247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11256 53.1 NaN 827360 35 0 103770 0.327 + 34767 YQLGVQFLV 9 92 533.8016319833379 NaN 0 533.787841796875 PEAK HCD FTMS 0 0 0 11255 10198.6923828125 0.18751758292515092 7 -0.16690444946289062 1 Unmodified _YQLGVQFLV_ ENST00000314475.6_1_11:120197881-120197932:+|nuORF 8.593279151180031 0.2536050107310812 1 VD 2 8 6.0835 0 0 0.5709 0 0 165.1076476308305 683.3554781549436 848.4631257857741 0 0 0 0 0 0 0 0.5994850021680094 0 VD 0.5709 - 75 + NaN NaN 216914 NaN 8560 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11257 53.104 NaN 482240 35 0 23668 0.261 + 6004 FPDRIMNTF 9 94 578.7763288981632 1155.5381048631264 2 578.7763671875 MULTI HCD FTMS 0 0 0 11255 165540.90625 0.22423787486537836 -12 0.3248176574707031 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 79.42699986076722 0.0060377907040421955 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 2 + 72.934 0 0 6.3117 6.3117 84.672 0 0 0 7.958224711478053 16.478174818886373 7.958224711478053 2.340832060333682 0 2.2034021960761265 1.2218487496163564 0 0.6989700043360187 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[WN]|[YH]}[KS]{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[WN]|[YH]}[KS]{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KP]QQ{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[R{I|L}][DP]{M(Oxidation (M))|F} 6.3117;6.1091;5.623;5.5148;5.3122;5.1373;4.8261;4.3404;2.2812;1.1697 -;+;-;-;-;-;-;-;-;- + 575 NaN NaN 162794.4 NaN 8561 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11258 53.108 NaN 149450 35 0 29040 0.263 + -1 WCAAPLAL 8 37 451.23441827188924 900.4542836105785 2 451.23492431640625 MULTI HCD FTMS 0 0 0 11255 63207.96484375 0.4241902414144492 7 -0.16690444946289062 3 Carbamidomethyl (C) _WC(Carbamidomethyl (C))AAPLAL_ REV__ENST00000553700.5_2_14:31675151-31676803:-|nuORF 32.45364647766026 0.3278715449852315 1 {I|L}A{I|L} 3 -1 38.188 0 0 4.2409 0 0 585.2424183576187 0 585.2424183576187 0 38.187587626244124 0 0 0 1.3494850021680094 0 0 0 {I|L}A{I|L} 4.2409 + + 15 NaN NaN 105821.8 NaN 8562 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11259 53.111 NaN 248810 35 0 39349 0.261 -1 RKMRNEEF 8 50 563.2765860851016 1124.538619237003 2 563.7921142578125 MULTI HCD FTMS 0 0 0 11255 11757.6025390625 0.5459577185379898 4 -0.10161209106445312 4 Oxidation (M) _RKM(Oxidation (M))RNEEF_ tr|U7T0X0|U7T0X0_FUSNUPutativeseptationproteinSpoVGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=spoVGPE=3SV=1 14.581692164780916 0.48650662947107914 1 WAVYEE{M(Oxidation (M))|F} 7 -1 43.154 0 0 3.8375 0 0 182.1112033207906 0 182.1112033207906 0 17.74813245057537 0 0 0 0 0 1.0994850021680094 0 WAVYEE{M(Oxidation (M))|F} 3.8375 - 123 + NaN NaN 119366.7 NaN 8563 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11260 53.114 NaN 127590 35 0 20624 0.261 + 34925 YSLEVKYHC 9 52 571.2731646510573 NaN 0 571.2893676757812 PEAK HCD FTMS 0 0 0 11255 14952.19921875 1 0 0 5 Unmodified _YSLEVKYHC_ REV__ENSG00000173064|ENST00000682272|HECTD4;REV__ENST00000550968.5_1_12:112641421-112665930:-|nuORF;REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4;REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4;REV__nc|ENSG00000173064|Q9Y4D8|HECTD4 7.289230182591677 0.2599242500475609 1 {I|L}AHK 4 -1 13.487 0 0 1.1825 0 0 204.0575117466147 484.20331751041255 688.2608292570272 0 0 0 0 0 0 0 0 0 {I|L}AHK 1.1825 - 57 + NaN NaN 109849.1 NaN 8564 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11261 53.118 NaN 102360 35 0 6808.9 0.261 + 22240 QNQQFQIN 8 42 510.2498604786843 NaN 0 510.26123046875 PEAK HCD FTMS 0 0 0 11255 5535.44580078125 0.3325910373398991 -2 0.0491943359375 6 Unmodified _QNQQFQIN_ ENSG00000102683|ENST00000218867|SGCG 13.50788311687929 0.38822285293237185 1 {M(Oxidation (M))|F}Q 2 6 12.875 0 0 1.2642 0 0 498.21992251811236 242.11322961978752 740.3331521378999 0 0 0 0 0 0.5 0 0 0.3807196863200844 + {M(Oxidation (M))|F}Q 1.2642 + + 46 + NaN NaN 111097.5 NaN 8565 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11262 53.121 NaN 292590 35 0 37186 0.261 + 27840 TDEAFFAHNL 10 77 582.7695637464891 1163.524574559778 2 582.7664794921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TDEAFFAHNL_ REV__ENSG00000196632|ENST00000354646|WNK3;REV__nc|ENSG00000196632|Q9BYP7-2|WNK3;REV__nc|ENSG00000196632|Q9BYP7-3|WNK3;REV__nc|ENSG00000196632|Q9BYP7-4|WNK3 8.155526934196011 0.43213520406898465 1 SVQWVY{M(Oxidation (M))|F} 7 -1 44.399 0 0 3.8159 0 0 236.07908827949376 0 236.07908827949376 0 30.446085565694432 0 0 0 1.718765315847925 0 0 0 SVQWVY{M(Oxidation (M))|F} 3.8159 - 290 NaN NaN 136310.8 NaN 8566 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11263 53.124 NaN 181380 35 0 31358 0.262 -1 PVDKDMEL 8 54 481.72857370315734 NaN 0 481.7283630371094 PEAK HCD FTMS 0 0 0 11255 87847.2578125 0.8311882893765088 -2 0.0491943359375 8 Oxidation (M) _PVDKDM(Oxidation (M))EL_ ENSG00000147485|ENST00000356297|PXDNL 25.399314129420986 0.3813806174882625 1 E{M(Oxidation (M))|F}{I|L} 3 -1 17.193 0 0 1.7882 0 0 131.09479419161306 438.16399890112126 569.2587930927343 0 0 0 0 0 0.75 0 0 0 E{M(Oxidation (M))|F}{I|L} 1.7882 - 18 + NaN NaN 118481.5 NaN 8567 2694 11255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11265 53.129 NaN 1398800 35 0 212690 0.327 + 17939 MITDLEERL 9 94 568.2867843198294 1134.5590157064587 2 568.2869262695312 MULTI HCD FTMS 0 0 0 11264 703570.0625 0.6245941873693621 -4 0.10508346557617188 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 125.0377797344192 0.0009059125702818869 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 115.54 0 0 10.184 10.184 90.017 0 0 0 20.942798834023606 13.2711470149615 13.2711470149615 2.0340219607612653 0 2.9247425010840047 2 2.0713337517843655 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;[{I|L}T]{M(Oxidation (M))|F}D{I|L}ERE{I|L};{I|L}{M(Oxidation (M))|F}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};[{I|L}T]{M(Oxidation (M))|F}D{I|L}EER{I|L};[{I|L}T]{M(Oxidation (M))|F}D{I|L}ER{I|L}E;{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]TERE{I|L};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]TEER{I|L} 10.184;10.005;9.0143;8.3382;8.1299;7.8214;7.7024;7.3477;5.0902;4.4545 +;-;-;-;-;+;-;-;-;- + 4821 NaN NaN 299435.3 NaN 8568 2695 11264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11266 53.134 NaN 923450 35 0 104180 0.261 + 25960 SPDFDNQTL 9 93 518.732720353195 1035.4508877731898 2 518.7329711914062 MULTI HCD FTMS 0 0 0 11264 429540.21875 0.9492825728342479 -1 0.029636383056640625 2 Unmodified _SPDFDNQTL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1 128.93241758739586 0.0006697181619526092 1 [PS]D{M(Oxidation (M))|F}DNQT{I|L} 9 0 + 92.908 0 0 8.9727 8.9727 88.893 0 0 0 1.7609125905568135 16.478174818886373 1.7609125905568135 1.7609125905568135 0 1.8807196863200843 1.3979400086720375 0.8996498648046138 0.7302046884880937 + + [PS]D{M(Oxidation (M))|F}DNQT{I|L};[DP]S{M(Oxidation (M))|F}DNQT{I|L};[PS]D{M(Oxidation (M))|F}DN[AG]T{I|L};[PS]D{M(Oxidation (M))|F}DGGQT{I|L};[DP]S{M(Oxidation (M))|F}DGGQT{I|L};[DP]S{M(Oxidation (M))|F}DN[AG]T{I|L};[PS]D{M(Oxidation (M))|F}DGG[AG]T{I|L};[DP]S{M(Oxidation (M))|F}DGG[AG]T{I|L};[PS]D{M(Oxidation (M))|F}D[QT]N{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DP]DNQT{I|L} 8.9727;8.8026;8.0834;8.0834;7.9133;7.9133;6.4931;6.323;5.3688;5.2952 +;-;-;-;-;-;-;-;-;- + 1074 NaN NaN 216871.7 NaN 8569 2695 11264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11267 53.137 NaN 232220 35 0 12810 0.261 + 9080 HPFFKDMSL 9 68 561.2759590945816 1120.537365255963 2 561.276123046875 MULTI HCD FTMS 0 0 0 11264 77110.28125 0.309931040996832 14 -0.3168907165527344 3 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 20.41453444215458 0.18397929046831515 1 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.7842 0 0 0 736.3357967199642 736.3357967199642 10.647080789673815 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.7842 + + 274 + NaN NaN 136148.8 NaN 8570 2695 11264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11268 53.141 NaN 146080 35 0 18921 0.261 + 16141 LPTSLERAL 9 53 500.29540095469 998.5762489761801 2 500.29559326171875 MULTI HCD FTMS 0 0 0 11264 42017.46484375 0.6118453325457885 -2 0.0558929443359375 4 Unmodified _LPTSLERAL_ ENSG00000171049|ENST00000340023|FPR2;ENSG00000187474|ENST00000339223|FPR3 41.95555342248728 0.056367691549927025 1 {I|L}PTST 5 5 68.474 0 0 6.8572 0 0 0 496.3028963678344 496.3028963678344 62.65530876141554 0 0 0 0 1.25 1.5228787452803376 0.8807196863200843 0 {I|L}PTST 6.8572 - 57 + NaN NaN 117205 NaN 8571 2695 11264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11269 53.144 NaN 108540 35 0 10198 0.261 + -1 RLECHPCKF 9 60 623.792988433298 1245.5714239333959 2 624.294677734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _RLEC(Carbamidomethyl (C))HPC(Carbamidomethyl (C))KF_ REV__ENSG00000130856|ENST00000320610|ZNF236;REV__nc|ENSG00000130856|Q9UL36-2|ZNF236;REV__nc|ENSG00000130856|Q9UL36|ZNF236 6.723162845929126 0.3000504726104499 1 D{[QD]|[EN]|[WG]|[KD]|[RS]}PS{I|L}{M(Oxidation (M))|F} 7 -1 22.695 0 0 1.8221 0 0 425.19444472480626 0 425.19444472480626 0 15.705707356182117 0 0 0 0 0 0 0 D{[QD]|[EN]|[WG]|[KD]|[RS]}PS{I|L}{M(Oxidation (M))|F} 1.8221 - 37 NaN NaN 107304.8 NaN 8572 2695 11264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11270 53.147 NaN 106930 35 0 7910.2 0.261 -1 FALCTIIPME 10 41 605.7979213284881 1209.581289723776 2 606.2999877929688 MULTI HCD FTMS 0 0 0 11264 30615.408203125 0.8416147937805798 2 -0.049076080322265625 6 Carbamidomethyl (C),Oxidation (M) _FALC(Carbamidomethyl (C))TIIPM(Oxidation (M))E_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENST00000539215.5_1_12:133249167-133250211:-|nuORF;ENST00000545015.1_1_12:133249164-133249818:-|nuORF 10.823927491677226 0.4098686510432541 1 E{I|L}{[CP]|[EA]} 4 -1 20.049 0 0 1.6575 0 0 749.3483143537125 0 749.3483143537125 0 14.564856298445576 0 0 0 0.4247425010840047 0 0.5 0 E{I|L}{[CP]|[EA]} 1.6575 - 8 NaN NaN 97432.6 NaN 8573 2695 11264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11272 53.152 NaN 385200 35 0 103570 0.327 + 14602 LFQFVREL 8 65 526.3012747257933 NaN 0 526.287109375 PEAK HCD FTMS 0 0 0 11271 5758.98681640625 0.3195813741559727 -1 0.02288055419921875 1 Unmodified _LFQFVREL_ REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;REV__ENSG00000106804|ENST00000223642|C5 10.183394434864962 0.38822285293237185 1 ETVKSD 6 -1 33.409 0 0 3.18 0 0 131.12230200251037 257.1293503844113 388.25165238692165 0 0 0 0 0 0 0 1.1549471895720984 0 ETVKSD 3.18 - 177 + NaN NaN 135372.2 NaN 8574 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11273 53.157 NaN 290380 35 0 34540 0.261 + 312 AFRYLAQYY 9 69 597.8006271187961 1193.5867013043921 2 598.287109375 MULTI HCD FTMS 0 0 0 11271 20562.431640625 0.8471533324465874 3 -0.07527542114257812 2 Unmodified _AFRYLAQYY_ ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F}VH[EP]{I|L}V 7 8 22.479 0 0 1.8833 0 0 112.11258524045077 257.0172213190063 369.12980655945705 0 0 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}VH[EP]{I|L}V 1.8833 - 120 + NaN NaN 126688.8 NaN 8575 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11274 53.16 NaN 302960 35 0 35307 0.262 -1 RLGMTASEM 9 78 506.2340287992694 1010.4535046653389 2 506.7364196777344 MULTI HCD FTMS 0 0 0 11271 167117.859375 1 0 0 3 Oxidation (M) _RLGMTASEM(Oxidation (M))_ ENSG00000163376|ENST00000417314|KBTBD8 12.531546534597751 0.2520865569484384 1 TTESA{M(Oxidation (M))|F} 6 -1 44.008 0 0 4.3553 0 0 356.19942859287636 0 356.19942859287636 0 0.004836249443002316 0 0 0 0 0 1.0387254899964358 0 TTESA{M(Oxidation (M))|F} 4.3553 - 144 + NaN NaN 132992.1 NaN 8576 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11275 53.164 NaN 206570 35 0 39416 0.261 + 11104 IYIAGHPAF 9 50 494.76624313452044 987.5179333358409 2 494.7664489746094 MULTI HCD FTMS 0 0 0 11271 75415.1015625 0.08544900429779644 14 -0.3067970275878906 4 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 56.04830969593885 0.023109620888794903 1 [Y{I|L}]{I|L}A{[HG]|PP}{M(Oxidation (M))|F}[PA] 9 2 + 50.893 0 0 5.1537 5.1537 83.727 0 0 0 22.811121573686748 4.210821449940525 4.210821449940525 4.515449934959719 0 1.7302046884880937 1.6989700043360187 0 0 [Y{I|L}]{I|L}A{[HG]|PP}{M(Oxidation (M))|F}[PA];[Y{I|L}]{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HQ]{M(Oxidation (M))|F}[PA];[Y{I|L}]{I|L}[HQ][PA]{M(Oxidation (M))|F} 5.1537;4.6964;4.0675;3.8389 -;+;-;- + 137 + NaN NaN 115124.8 NaN 8577 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11276 53.167 NaN 199480 35 0 16395 0.261 + 26881 SYIRQQSLH 9 68 566.3003820940315 1130.586211254863 2 566.7897338867188 MULTI HCD FTMS 0 0 0 11271 6282.33984375 0.4650893243862547 2 -0.04909515380859375 5 Unmodified _SYIRQQSLH_ REV__ENSG00000167635|ENST00000443387|ZNF146;REV__ZNF146|p.I172Sfs*9|1|0.2|ENSG00000167635|chr19:36236951-36237020|CTCATAAAACATCAGAACATTCACACTGGAGAGAAACCCTATGAATGTAACGAATGTGGAAAAGCCTTCT/-|frameshift_variant 13.042465956692817 0.2476723265019929 1 {I|L}SS{M(Oxidation (M))|F} 4 -1 32.607 0 0 2.8841 0 0 678.3603639421661 0 678.3603639421661 0 17.66116617947077 0 0 0 0 0 0.3054621874040891 0 {I|L}SS{M(Oxidation (M))|F} 2.8841 - 199 + NaN NaN 125646.6 NaN 8578 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11277 53.17 NaN 384780 35 0 40763 0.261 + 28389 TPFHEIMSL 9 73 545.7656011715479 1089.5166494098958 2 545.7649536132812 MULTI HCD FTMS 0 0 0 11271 145115.703125 0.4213321408736778 -14 0.3773345947265625 6 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 54.773552608820026 0.024892918755467567 1 PE{I|L}{M(Oxidation (M))|F}S{I|L} 6 3 63.761 0 0 5.8522 0 0 385.17076308418126 0 385.17076308418126 0 39.32380653375944 0 0 0 0.9247425010840047 0 1.274227503252014 0 PE{I|L}{M(Oxidation (M))|F}S{I|L} 5.8522 - 417 NaN NaN 140214.7 NaN 8579 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11278 53.173 NaN 157120 35 0 10207 0.261 + -1 WCIMFLLF 8 70 557.7752797002436 1113.536006467287 2 557.7740478515625 MULTI HCD FTMS 0 0 0 11271 18308.251953125 0.21121951692153637 -8 0.219970703125 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WCIMFLLF_ REV__ENSG00000186908|ENST00000426126|ZDHHC17;REV__ENST00000550244.1_1_12:77240353-77244762:+|nuORF;REV__ZDHHC17|p.L486Q|1|0.36|ENSG00000186908|chr12:76846629-76846629|T/A|missense_variant 11.114462752807354 0.5120171699125776 1 {I|L}{M(Oxidation (M))|F}TE{[QC]|[C(Carbamidomethyl (C))A]}N 7 -1 29.965 0 0 2.691 0 0 260.1482105939469 0 260.1482105939469 0 0.936588228698696 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}TE{[QC]|[C(Carbamidomethyl (C))A]}N 2.691 - 218 NaN NaN 113660.9 NaN 8580 2696 11271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11280 53.178 NaN 1896600 35 0 298480 0.327 + 15555 LPDQPPYHL 9 90 540.2797881864748 1078.5450234397495 2 540.2797241210938 MULTI HCD FTMS 0 0 0 11279 990938.125 0.9486638268398517 2 -0.04907989501953125 1 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 139.13845188893973 5.0762478717762276E-05 1 {I|L}PDQ[TA]{I|L}Q 8 5 88.766 0 0 8.2301 0 0 0 209.05666528873283 209.05666528873283 48.112431371158735 0 0 0 0 0.8494850021680094 1.5228787452803376 1.5356668758921828 1.1549471895720984 {I|L}PDQ[TA]{I|L}Q 8.2301 - 4730 + NaN NaN 370637.3 NaN 8581 2697 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11281 53.183 NaN 624800 35 0 203850 0.261 + 30012 VFPDKGYSF 9 67 530.2610228193264 1058.5074927054527 2 530.2609252929688 MULTI HCD FTMS 0 0 0 11279 278369.09375 0.5442788286929747 -12 0.31817626953125 2 Unmodified _VFPDKGYSF_ ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1 19.361941925380144 0.1930734562688509 1 V{M(Oxidation (M))|F}P 3 6 24.041 0 0 2.2712 0 0 0 712.2985323541624 712.2985323541624 6.03794667124717 0 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F}P 2.2712 + + 133 + NaN NaN 175714 NaN 8582 2697 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11282 53.186 NaN 254150 35 0 39598 0.261 + 3048 EAFRYTQLRTL 11 41 466.5892030939056 1396.7457798819169 3 466.58905029296875 MULTI HCD FTMS 0 0 0 11279 77629.5859375 0.7669075331324848 1 -0.022899627685546875 3 Unmodified _EAFRYTQLRTL_ REV__BICD2-IPPK|1|fusion;REV__ENSG00000127080|ENST00000287996|IPPK 2.2527281973983926 0.4090409658946738 1 {M(Oxidation (M))|F}QA 3 -1 26.198 0 0 1.8756 0 0 1032.5724314687568 0 1032.5724314687568 0 10.740312677277187 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QA 1.8756 - 10 NaN NaN 123715.3 NaN 8583 2697 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11283 53.19 NaN 230820 35 0 24425 0.261 -1 CLRDMQPL 8 63 496.2391128103569 990.4636726875138 2 496.2392883300781 MULTI HCD FTMS 0 0 0 11279 78765.390625 0.7137468173501451 -3 0.07871246337890625 4 Oxidation (M) _CLRDM(Oxidation (M))QPL_ ENSG00000102921|ENST00000262384|N4BP1 16.942295170755138 0.46913822049235215 1 E{I|L} 2 -1 19.068 0 0 1.9252 0 0 730.328416892775 0 730.328416892775 0 10.115618994235687 0 0 0 0 0 0.5 0 E{I|L} 1.9252 - 26 NaN NaN 119329.4 NaN 8584 2697 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11284 53.193 NaN 220580 35 0 14943 0.261 + 32361 VYVQELQKL 9 61 560.3242888549285 1118.6340247766568 2 560.3240356445312 MULTI HCD FTMS 0 0 0 11279 90281.609375 1 0 0 5 Unmodified _VYVQELQKL_ ENSG00000102189|ENST00000322349|EEA1 37.07464296494664 0.07877380486334713 1 [YV]VQE{I|L}QK{I|L} 9 0 + 63.809 0 0 5.7042 5.7042 84.817 0 0 0 18.055847141874892 4.771212547196626 4.771212547196626 4.771212547196626 0 1.8737125054200234 1.5228787452803376 0 0 + + [YV]VQE{I|L}QK{I|L};[YV]VQE{I|L}Q{I|L}K;[YV]VQE{I|L}[AG]K{I|L};[YV]VQE{I|L}[AG]{I|L}K;[YV]{[SA]|[TG]}[TP]{I|L}QK{I|L};[YV]{[SA]|[TG]}[TP]{I|L}Q{I|L}K;[YV]V[AG]E{I|L}QK{I|L};[KQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DDK{I|L};[KQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DD{I|L}K 5.7042;5.2777;4.881;4.4545;3.9871;3.5606;3.2669;1.3964;0.96984 +;-;-;-;-;-;-;-;- + 215 NaN NaN 135453.8 NaN 8585 2697 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11285 53.196 NaN 68088 35 0 5449 0.261 -1 DQEMLMKLMI 10 39 634.3076417024556 NaN 0 634.3036499023438 PEAK HCD FTMS 0 0 0 11279 24941.20703125 0.6091140987142868 8 -0.16977691650390625 6 Oxidation (M) _DQEMLMKLM(Oxidation (M))I_ ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 2.498486711656943 0.3380459306859131 1 K 1 -1 6.9897 0 0 0.55185 0 0 391.21768711409237 744.2669161432249 1135.4846032573173 0 0 0 0 0 0 0 0 0 K 0.55185 + + 4 + NaN NaN 97799.3 NaN 8586 2697 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11287 53.201 NaN 569930 35 0 102720 0.327 + 22270 QPDPAIGVHL 10 66 523.7851334605496 1045.555713987899 2 523.7849731445312 MULTI HCD FTMS 0 0 0 11286 239092.09375 0.506216528921136 -4 0.10161209106445312 1 Unmodified _QPDPAIGVHL_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 26.88365393820708 0.25965138844209146 1 [QP]D[PA]{I|L}GVH{I|L} 10 0 + 28.389 0 0 2.7152 2.7152 87.584 0 0 0 9.0039247104859 4.083304244845603 4.083304244845603 28.389399919613965 0 0.3494850021680094 0 0 0 + + [QP]D[PA]{I|L}GVH{I|L} 2.7152 + + 230 + NaN NaN 168401.9 NaN 8587 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11288 53.206 NaN 268980 35 0 18914 0.261 + 255 AFIEKHWTF 9 67 589.8031860986832 1177.5918192641664 2 589.8035278320312 MULTI HCD FTMS 0 0 0 11286 143029.859375 0.6415355935173018 3 -0.0652923583984375 2 Unmodified _AFIEKHWTF_ ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 57.72198328787511 0.020768266150574023 1 {M(Oxidation (M))|F}A{I|L}E[HK]WT{M(Oxidation (M))|F} 9 2 + 58.527 0 0 4.9701 4.9701 88.319 0 0 0 31.057743964882714 7.949171771974761 7.949171771974761 14.107281392838829 0 2.1549471895720984 0 1.4916440611282626 0 {M(Oxidation (M))|F}A{I|L}E[HK]WT{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}H{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AE;{M(Oxidation (M))|F}[HV]{I|L}[QT]WT{M(Oxidation (M))|F};{[WT]|[RM]}[HK]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}AE;[WH][KT]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}AE;{[MS]|[{M(Oxidation (M))|F}A]}[R{M(Oxidation (M))|F}][VS]S{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[WT]|[RM]}[HK]E{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[WH][KT]E{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[HV]{M(Oxidation (M))|F}{I|L}[QT]WT{M(Oxidation (M))|F};{[WT]|[RM]}[HK]E{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F} 4.9701;3.7721;2.4766;2.4676;2.318;2.3057;2.0348;1.8853;1.7964;1.269 -;-;-;-;-;-;-;-;-;- 388 + NaN NaN 126204.2 NaN 8588 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11289 53.209 NaN 191490 35 0 40313 0.261 + -1 MSSLHGTREE 10 53 581.7618612977525 1161.5091696623049 2 581.7618408203125 MULTI HCD FTMS 0 0 0 11286 77126.5859375 0.7852246382707851 7 -0.14687728881835938 3 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 12.240655878213236 0.39661705172222156 1 RSVS{[ES]|[DT]|[{I|L}C]} 6 -1 40.406 0 0 3.4788 0 0 498.22715956855626 0 498.22715956855626 0 29.948500216800937 0 0 0 1.5 0 0 0 RSVS{[ES]|[DT]|[{I|L}C]} 3.4788 - 33 NaN NaN 111063.7 NaN 8589 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11290 53.213 NaN 217450 35 0 21736 0.261 + 13702 KYPLLISRI 9 58 551.8527309669998 1101.6909090007996 2 551.8531494140625 MULTI HCD FTMS 0 0 0 11286 26795.8984375 0.41488973782428124 1 -0.026180267333984375 4 Unmodified _KYPLLISRI_ ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2 10.150570793230772 0.27265765907388223 1 KYP 3 6 24.425 0 0 2.217 0 0 0 710.4547823541624 710.4547823541624 6.465912507003608 0 0 0 0 0.4247425010840047 0 0 0 + KYP 2.217 + + 113 + NaN NaN 119479.6 NaN 8590 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11291 53.216 NaN 103790 35 0 13640 0.261 -1 CMGVDCTEIF 10 46 624.239043632367 1246.463534331534 2 624.2388305664062 MULTI HCD FTMS 0 0 0 11286 50260.3671875 0.8199191350770736 -2 0.04909515380859375 5 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))GVDC(Carbamidomethyl (C))TEIF_ ENSG00000006194|ENST00000219069|ZNF263 3.5964929083625545 0.45626689593999237 1 DPY{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.3646 0 0 706.2404652326187 0 706.2404652326187 0 36.453650195120844 0 0 0 1 0 0 0 DPY{M(Oxidation (M))|F} 3.3646 - 9 NaN NaN 98812.5 NaN 8591 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11292 53.219 NaN 68935 35 0 4962.2 0.261 + 29381 TYQEFNHYL 9 46 607.7770436396839 1213.5395343461678 2 607.77685546875 MULTI HCD FTMS 0 0 0 11286 22863.015625 0.6400656673667044 -4 0.10161209106445312 6 Unmodified _TYQEFNHYL_ ENSG00000102384|ENST00000682095|CENPI 13.042465956692817 0.2476723265019929 1 [YT]QE 4 5 29.297 0 0 2.4142 0 0 0 689.3059176080686 689.3059176080686 27.07834387816234 0 0 0 0 0 2 0 0 + [YT]QE 2.4142 + + 11 + NaN NaN 94096.2 NaN 8592 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11293 53.223 NaN 61406 35 0 7272.7 0.261 -1 YYMKDLPTSF 10 38 640.7971275494345 1279.579702165669 2 640.7969360351562 MULTI HCD FTMS 0 0 0 11286 16028.1748046875 0.09720311991859903 12 -0.2577018737792969 7 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 2.735195868890462 0.4608258780945842 1 Q 1 -1 0.27759 0 0 0.021694 0 0 458.3102452338315 690.1901949518186 1148.5004401856502 0 0 0 0 0 0 0 0 0 Q 0.021694 - 1 + NaN NaN 98130.9 NaN 8593 2698 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11295 53.228 NaN 1415100 35 0 358280 0.327 + 3151 EASPVEPQL 9 60 485.24806842239076 968.4815839115815 2 485.2480163574219 MULTI HCD FTMS 0 0 0 11294 841614.3125 1 0 0 1 Unmodified _EASPVEPQL_ ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 85.64151623876279 0.004640175941193596 1 {[CP]|[EA]}S[VP]EPQ{I|L} 9 0 + 44.332 0 0 4.5774 4.5774 88.564 0 0 0 23.186362358410122 12.592955308916487 12.592955308916487 19.855472428419333 0 1.6747425010840047 0 0.7742275032520141 0.75 + + {[CP]|[EA]}S[VP]EPQ{I|L};[VP]ESAEPQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KS]E{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};{[QN]|[E{I|L}]|[KN]}P[NP]{I|L}S{[CP]|[EA]};[QP]E[VP]{I|L}S{[CP]|[EA]} 4.5774;2.5273;1.6189;0.1128;0.028256 +;-;-;-;- + 311 + NaN NaN 303569.2 NaN 8594 2699 11294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11296 53.232 NaN 1080400 35 0 88046 0.261 + 24138 RYCVQLSQI 9 92 555.2925969675762 1108.5706410019523 2 555.2921142578125 MULTI HCD FTMS 0 0 0 11294 416896.65625 0.9574639661652395 3 -0.0554046630859375 2 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 83.42873516780209 0.004742894019233849 1 VQ{I|L}SQ{I|L} 6 3 73.761 0 0 6.6537 0 0 422.17341811347814 0 422.17341811347814 0 50.26084705832169 0 0 0 2.3494850021680094 0 0.8494850021680094 0 + VQ{I|L}SQ{I|L} 6.6537 + + 747 NaN NaN 264624 NaN 8595 2699 11294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11297 53.235 NaN 771910 35 0 141460 0.261 + 15488 LPDMVVSHL 9 80 513.7679631974995 1025.521373461799 2 513.7681274414062 MULTI HCD FTMS 0 0 0 11294 323499.46875 0.20003222703787804 21 -0.503265380859375 3 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 99.79894945604345 0.0042691968066200965 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 103.11 0 0 10.055 10.055 97.028 0 0 0 85.63994702129584 10.642492736872597 10.642492736872597 21.31559999683283 0 2.7658715643802765 1.3979400086720375 0.6861818737241735 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{I|L}[MT]SH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};{I|L}PDV[VS]{M(Oxidation (M))|F}H{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L} 10.055;7.9763;5.9093;5.5881;5.5435;5.4629;5.2015;5.2015;4.0324;4.0324 +;+;-;-;-;-;-;-;-;- + 1568 + NaN NaN 206759.9 NaN 8596 2699 11294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11298 53.239 NaN 151670 35 0 26710 0.262 + -1 AFHCIKCKF 9 45 404.20102689401216 1209.5812512822365 3 404.20086669921875 MULTI HCD FTMS 0 0 0 11294 29684.740234375 0.27991227249488376 5 -0.09781265258789062 4 2 Carbamidomethyl (C) _AFHC(Carbamidomethyl (C))IKC(Carbamidomethyl (C))KF_ REV__ENSG00000215421|ENST00000299687|ZNF407;REV__nc|ENSG00000215421|Q9C0G0-2|ZNF407;REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407 8.155526934196011 0.2891920862272901 1 A{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.0847 0 0 0 988.4531755965494 988.4531755965494 11.237125054200234 0 0 0 0 0.4247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.0847 + + 17 + NaN NaN 112803.2 NaN 8597 2699 11294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11300 53.244 NaN 1022100 35 0 66526 0.327 + 6005 FPDRIMNTF 9 99 578.7763288981632 1155.5381048631264 2 578.7763671875 MULTI HCD FTMS 0 0 0 11299 505188.1875 0.6843162100430527 -6 0.14404296875 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 166.76915356408847 5.584250141028017E-09 1 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 102.64 0 0 8.8823 8.8823 94.479 0 0 0 63.535480024349546 16.478174818886373 16.478174818886373 12.460762528683702 0 3.055462187404089 0 2.551256063987217 0.9049471895720984 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR[SG]{[ET]|[MV]}T{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KP]AA{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{[QS]|[NT]}YP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8.8823;7.8039;7.6556;7.5843;6.8587;6.7874;5.1939;4.0356;3.7877;3.6796 +;-;+;-;-;-;-;-;-;- + 2210 + NaN NaN 237942.3 NaN 8598 2700 11299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11301 53.248 NaN 1446800 35 0 169430 0.261 + 22911 QYQQIISRL 9 106 574.8254120949927 1147.6362712567852 2 574.8262329101562 MULTI HCD FTMS 0 0 0 11299 293579.90625 0.9217834520146653 1 -0.022861480712890625 2 Unmodified _QYQQIISRL_ ENSG00000104881|ENST00000360957|PPP1R13L 107.09958533191995 0.0034159042678574016 1 S{I|L}{I|L}QQC(Carbamidomethyl (C)){I|L} 7 7 71.569 0 0 6.2362 0 0 287.19514662910314 0 287.19514662910314 0 22.421801636054283 0 0 0 1.555462187404089 0 1.0752574989159953 0.9802046884880937 S{I|L}{I|L}QQC(Carbamidomethyl (C)){I|L} 6.2362 - 1634 NaN NaN 324192.2 NaN 8599 2700 11299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11302 53.252 NaN 329720 35 0 58287 0.262 + 25172 SALGYLHSL 9 61 480.76120426580894 959.5078555984179 2 480.7608642578125 MULTI HCD FTMS 0 0 0 11299 124983.1953125 0.6387716319152134 -1 0.0162506103515625 3 Unmodified _SALGYLHSL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 53.832793166522166 0.026208976789938845 1 {[SA]|[TG]}{I|L}GY{I|L}H{[TV]|[{I|L}S]} 9 0 + 56.391 0 0 5.8771 5.8771 90.708 0 0 0 6.6072813928388285 6.6072813928388285 6.6072813928388285 19.22167511924051 0 2.3807196863200843 0 0.3252574989159953 0 + + {[SA]|[TG]}{I|L}GY{I|L}H{[TV]|[{I|L}S]};{[SA]|[TG]}{I|L}G[H{I|L}]Y{[TV]|[{I|L}S]};{[SA]|[TG]}[YG]{I|L}{I|L}H{[TV]|[{I|L}S]};[H{I|L}]S{I|L}QY{[TV]|[{I|L}S]} 5.8771;3.8738;2.4115;1.2863 +;-;-;- + 181 NaN NaN 130923 NaN 8600 2700 11299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11303 53.255 NaN 172140 35 0 8277.7 0.261 + 35894 YYSNLHQTF 9 70 586.7735211591511 1171.532489385102 2 586.774658203125 MULTI HCD FTMS 0 0 0 11299 52961.625 0.5574851045926834 6 -0.13402557373046875 4 Unmodified _YYSNLHQTF_ ENSG00000171806|ENST00000310392|METTL18 15.248480904072842 0.22861284681709862 1 YY 2 7 40.969 0 0 3.4971 0 0 0 842.373107565876 842.373107565876 7.6632595991839665 0 0 0 0 0 2 0 0 + YY 3.4971 + + 340 + NaN NaN 108123.8 NaN 8601 2700 11299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11304 53.258 NaN 154140 35 0 6534.8 0.261 + -1 FAKDCEACAY 10 69 589.2348654479254 1176.4551779626506 2 589.2355346679688 MULTI HCD FTMS 0 0 0 11299 26242.794921875 0.6447566603798429 12 -0.2575416564941406 5 Carbamidomethyl (C) _FAKDC(Carbamidomethyl (C))EACAY_ REV__ENSG00000196387|ENST00000355557|ZNF140;REV__nc|ENSG00000196387|P52738-2|ZNF140 6.723162845929126 0.4397169348982109 1 S{M(Oxidation (M))|F} 2 -1 16.186 0 0 1.3758 0 0 924.34672743965 0 924.34672743965 0 6.052659518797938 0 0 0 0.4247425010840047 0 0 0 S{M(Oxidation (M))|F} 1.3758 - 99 NaN NaN 104994.1 NaN 8602 2700 11299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11305 53.262 NaN 97386 35 0 10852 0.261 -1 0 33 646.6057083172077 NaN 0 646.3256225585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 Y 1 -1 3.9794 0 0 0.30819 0 0 682.8993305975029 442.1966951959594 1125.0960257934623 0 0 0 0 0 0 0 0 0 Y 0.30819 - 2 + NaN NaN 106722.7 NaN 8603 2700 11299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11307 53.267 NaN 1719400 35 0 261070 0.327 + 17940 MITDLEERL 9 97 568.2867843198294 1134.5590157064587 2 568.286865234375 MULTI HCD FTMS 0 0 0 11306 982131.1875 0.8718867723947096 2 -0.039154052734375 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 148.26817274609934 1.0657023776783114E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 116.18 0 0 10.24 10.24 90.06 0 0 0 20.731136571674753 67.61316845856769 20.731136571674753 2.0340219607612653 0 2.9247425010840047 2 2.135151878060192 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}[{I|L}A][NG][TA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]{I|L}D[NG][TA];{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]TE{I|L};{[RE]|[WV]}{I|L}E[{M(Oxidation (M))|F}V]TE{I|L};{[QN]|[E{I|L}]|[KN]}RE[{M(Oxidation (M))|F}V]TE{I|L};[VP]TN{[QD]|[EN]|[WG]|[KD]|[RS]}TT{M(Oxidation (M))|F}{I|L} 10.24;10.061;9.0706;8.2943;5.6197;5.5495;4.1328;3.9372;3.7642;3.2965 +;-;-;+;-;-;-;-;-;- + 6437 NaN NaN 349552.3 NaN 8604 2701 11306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11308 53.271 NaN 819160 35 0 105340 0.261 + 25961 SPDFDNQTL 9 84 518.732720353195 1035.4508877731898 2 518.7329711914062 MULTI HCD FTMS 0 0 0 11306 222174.375 0.49100469085664866 5 -0.11116409301757812 2 Unmodified _SPDFDNQTL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1 103.41943736471063 0.004016698775839292 1 [PS]D{M(Oxidation (M))|F}DNQT{I|L} 9 0 + 88.788 0 0 8.5748 8.5748 88.857 0 0 0 3.0102999566398125 16.478174818886373 3.0102999566398125 3.0102999566398125 0 1.3851518780601921 1.3979400086720375 0.6382104921644451 0.7742275032520141 + + [PS]D{M(Oxidation (M))|F}DNQT{I|L};[DP]S{M(Oxidation (M))|F}DNQT{I|L};[PS]D{M(Oxidation (M))|F}DGGQT{I|L};[PS]D{M(Oxidation (M))|F}DN[AG]T{I|L};[DP]S{M(Oxidation (M))|F}DN[AG]T{I|L};[DP]S{M(Oxidation (M))|F}DGGQT{I|L};[PS]D{M(Oxidation (M))|F}DGG[AG]T{I|L};[DP]S{M(Oxidation (M))|F}DGG[AG]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DP]DNQT{I|L};{[{M(Oxidation (M))|F}D]|MM}[PS]DNQT{I|L} 8.5748;8.2841;7.6855;7.6855;7.3948;7.3948;6.0527;5.762;5.5839;5.4139 +;-;-;-;-;-;-;-;-;- + 787 NaN NaN 204877.4 NaN 8605 2701 11306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11309 53.275 NaN 133860 35 0 17531 0.262 + 33589 YIQKHDNVSI 10 53 406.215705790879 NaN 0 406.2284851074219 PEAK HCD FTMS 0 0 0 11306 4614.90380859375 0.8856006314713586 1 -0.016292572021484375 3 Unmodified _YIQKHDNVSI_ ENSG00000173175|ENST00000462833|ADCY5;ENSG00000174233|ENST00000357869|ADCY6;ENST00000551435.1_1_12:49171156-49171914:-|nuORF;nc|ENSG00000173175|O95622-2|ADCY5;nc|ENSG00000174233|O43306-2|ADCY6 3.876331618118854 0.3368666864104206 1 D 1 9 3.0989 0 0 0.38239 0 0 447.23916807414236 245.12899194888908 692.3681600230315 0 0 0 0 0 0 0 0 0 + D 0.38239 + + 11 + NaN NaN 103072.7 NaN 8606 2701 11306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11310 53.278 NaN 104620 35 0 18639 0.261 + 21609 PYPFMSLVYF 10 47 421.87664416625876 NaN 0 421.87652587890625 PEAK HCD FTMS 0 0 0 11306 13098.80859375 0.6554539112574324 6 -0.13401412963867188 4 Unmodified _PYPFMSLVYF_ REV__ENSG00000011376|ENST00000645846|LARS2 3.5964929083625545 0.337106189561315 1 G 1 -1 2.4743 0 0 0.29395 0 0 470.5532323249019 311.1368807428344 781.6901130677363 0 0 0 0 0 0 0 0 0 G 0.29395 - 1 + NaN NaN 95180 NaN 8607 2701 11306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11312 53.283 NaN 165850 35 0 18966 0.327 + 5955 FPDPVDSGTQM 11 52 605.2582824425415 1208.5020119518829 2 605.2584228515625 MULTI HCD FTMS 0 0 0 11311 63966.390625 0.6759663629108971 1 -0.022861480712890625 1 Oxidation (M) _FPDPVDSGTQM(Oxidation (M))_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 43.981846655682396 0.1113057155252403 1 DS{[SA]|[TG]}Q{M(Oxidation (M))|F} 6 5 37.925 0 0 3.1382 0 0 555.2686740949091 0 555.2686740949091 0 27.467072242602484 0 0 0 1.2302046884880937 0 0.9247425010840047 0 + DS{[SA]|[TG]}Q{M(Oxidation (M))|F} 3.1382 + + 80 NaN NaN 102513.3 NaN 8608 2702 11311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11313 53.287 NaN 184070 35 0 20165 0.261 -1 IPMDPEHVEL 10 59 598.2868973092245 1194.559241685249 2 598.287109375 MULTI HCD FTMS 0 0 0 11311 100841 0.6322262150237071 12 -0.28063201904296875 2 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 24.990960013464015 0.27735500881591096 1 {I|L}{M(Oxidation (M))|F}PD 4 -1 36.414 0 0 3.0484 0 0 0 719.336690755531 719.336690755531 22.390690719683093 0 0 0 0 0.5 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}PD 3.0484 - 82 + NaN NaN 121314.4 NaN 8609 2702 11311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11314 53.291 NaN 172020 35 0 17346 0.261 -1 IPHMDIEAL 9 54 527.7666675310228 1053.5187821288455 2 527.7654418945312 MULTI HCD FTMS 0 0 0 11311 66847.34375 0.13404515694064362 44 -1.1621131896972656 3 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 10.823927491677226 0.26684000660059787 1 {I|L}EA{I|L} 4 -1 29.412 0 0 2.7918 0 0 609.2552357404312 0 609.2552357404312 0 9.948500216800937 0 0 0 0.5 0 0 0 {I|L}EA{I|L} 2.7918 + + 123 NaN NaN 114657.6 NaN 8610 2702 11311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11315 53.294 NaN 136390 35 0 7300 0.261 + 11791 KEFSEQEAK 9 57 548.2693775600465 1094.5242021868928 2 549.26708984375 MULTI HCD FTMS 0 0 0 11311 39986.2734375 0.05249804787922879 -11 0.25864410400390625 4 Unmodified _KEFSEQEAK_ REV__ENSG00000150477|ENST00000280020|KIAA1328;REV__ENST00000590617.5_1_18:34415331-34802187:+|nuORF;REV__ENST00000592611.5_1_18:34415331-34809581:+|nuORF;REV__nc|ENSG00000150477|Q86T90-2|KIAA1328 4.897010918128616 0.31389406404703984 1 EK 2 -1 13.812 0 0 1.2619 0 0 819.3656483380875 0 819.3656483380875 0 1.0480714659967223 0 0 0 0 0 0 0 EK 1.2619 - 79 NaN NaN 107879.3 NaN 8611 2702 11311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11316 53.298 NaN 124640 35 0 11887 0.261 + -1 RWNRSFSRC 9 53 634.8094551026203 NaN 0 634.8099975585938 PEAK HCD FTMS 0 0 0 11311 17463.25 0.7702760376113715 1 -0.022861480712890625 5 Carbamidomethyl (C) _RWNRSFSRC(Carbamidomethyl (C))_ REV__ENST00000533345.5_1_11:12499469-12518028:+|nuORF 1.6526216038709556 0.28723846860855273 1 S 1 -1 3.0989 0 0 0.24447 0 0 568.2543949691093 609.2949101698844 1177.5493051389935 0 0 0 0 0 0 0 0 0 S 0.24447 + + 5 + NaN NaN 104054.1 NaN 8612 2702 11311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11317 53.301 NaN 56545 35 0 3509.6 0.261 -1 YYMKDLPTSF 10 44 640.7971275494345 1279.579702165669 2 640.3578491210938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 2.735195868890462 0.4608258780945842 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.42862 0 0 458.315005976019 658.2234591119749 1116.538465087994 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.42862 - 4 + NaN NaN 101255.4 NaN 8613 2702 11311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11319 53.306 NaN 566900 35 0 63361 0.327 + 28390 TPFHEIMSL 9 82 545.7656011715479 1089.5166494098958 2 545.7656860351562 MULTI HCD FTMS 0 0 0 11318 322835.09375 0.9373265488826952 -7 0.15354156494140625 1 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 111.28704002717404 0.0027322905094575235 1 [TP]{M(Oxidation (M))|F}HE{I|L}{M(Oxidation (M))|F}S{I|L} 9 0 + 65.276 0 0 5.9912 5.9912 91.317 0 0 0 3.856150930823148 51.006288279103664 3.856150930823148 23.386313713333635 0 1.841129063296272 0 1.274227503252014 0 + + [TP]{M(Oxidation (M))|F}HE{I|L}{M(Oxidation (M))|F}S{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}N[WP][DV]{I|L};[YR]YE{I|L}{M(Oxidation (M))|F}S{I|L};{[TV]|[{I|L}S]}TC(Carbamidomethyl (C))[WP][DV]{I|L};[YV][YG][C(Carbamidomethyl (C))K]TS{I|L};{I|L}[HD]{I|L}[{M(Oxidation (M))|F}V]ESM;[TP]{M(Oxidation (M))|F}HE{I|L}T[{M(Oxidation (M))|F}V];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N[WP][DV]{I|L};{I|L}[HD][{M(Oxidation (M))|F}V]{I|L}ESM;{I|L}[HD]{I|L}EV{M(Oxidation (M))|F}SM 5.9912;3.8448;3.4812;3.4748;3.0404;2.6062;2.479;2.4001;2.369;2.3298 +;-;-;-;-;-;-;-;-;- + 1238 NaN NaN 166402.2 NaN 8614 2703 11318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11320 53.31 NaN 251030 35 0 28576 0.261 + 19695 NWVGEMYL 8 65 506.2340287992694 1010.4535046653389 2 506.73638916015625 MULTI HCD FTMS 0 0 0 11318 102870.3125 0.61555547016173 7 -0.15325546264648438 2 Unmodified _NWVGEMYL_ ENST00000437916.2_1_2:45148822-45149500:-|nuORF 8.593279151180031 0.5292430274356741 1 TTESA{M(Oxidation (M))|F} 6 7 31.349 0 0 3.1025 0 0 356.1982689249076 0 356.1982689249076 0 6.924712680444358 0 0 0 0 0 0.25 0 TTESA{M(Oxidation (M))|F} 3.1025 - 227 + NaN NaN 116075 NaN 8615 2703 11318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11321 53.314 NaN 426710 35 0 59381 0.261 + 29870 VFDEAIRAV 9 72 510.2796708466528 1018.5447887601056 2 510.2797546386719 MULTI HCD FTMS 0 0 0 11318 176976.71875 0.6806529358761981 -3 0.062015533447265625 3 Unmodified _VFDEAIRAV_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 83.42873516780209 0.004742894019233849 1 V{M(Oxidation (M))|F}DEA{I|L}RAV 9 0 + 90.5 0 0 8.8852 8.8852 94.179 0 0 0 80.04222849768787 9.137342758552691 9.137342758552691 11.48805141699414 0 3.004432191740108 0 0.805462187404089 0.3807196863200844 + + V{M(Oxidation (M))|F}DEA{I|L}RAV;[{M(Oxidation (M))|F}V]DEA{I|L}RAV;{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RAV;[{M(Oxidation (M))|F}V]DEA{I|L}G[R{I|L}];{[{M(Oxidation (M))|F}D]|MM}[W{I|L}]{I|L}RAV;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[R{I|L}]{M(Oxidation (M))|F}VAV;[{M(Oxidation (M))|F}V]DE[Q{I|L}][R{I|L}] 8.8852;7.7573;5.2241;5.2038;2.5474;1.761;1.6789 +;+;-;-;-;-;- + 264 + NaN NaN 150419.3 NaN 8616 2703 11318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11322 53.317 NaN 312150 35 0 14809 0.261 + 19048 NEDNGIIKAF 10 89 560.7853952421212 1119.5562375510424 2 560.7855834960938 MULTI HCD FTMS 0 0 0 11318 146839.3125 1 0 0 4 Unmodified _NEDNGIIKAF_ ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF 97.74103586103693 0.00040826645800522306 1 {[QD]|[EN]|[WG]|[KD]|[RS]}DN{[VA]|[{I|L}G]}{I|L}KA{M(Oxidation (M))|F} 10 0 + 73.242 0 0 6.542 6.542 88.106 0 0 0 7.456699251211148 7.456699251211148 7.456699251211148 9.164539485499247 0 3.110924374808178 0 0.3494850021680094 1.5484550065040281 + + {[QD]|[EN]|[WG]|[KD]|[RS]}DN{[VA]|[{I|L}G]}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}DGG{[VA]|[{I|L}G]}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[QA]{[CP]|[EA]}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[KA]{[CP]|[EA]}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}D[KT][PA]KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}DN{[VA]|[{I|L}G]}RR{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}DN{[VA]|[{I|L}G]}VVN{M(Oxidation (M))|F};[HV]K{I|L}{[VA]|[{I|L}G]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{M(Oxidation (M))|F};[HV][SG]{[{M(Oxidation (M))|F}D]|MM}{I|L}KA{M(Oxidation (M))|F};[RP]K{I|L}[EC]MP{M(Oxidation (M))|F} 6.542;5.7234;4.1091;4.1091;3.4773;3.4613;3.3497;2.8027;2.7772;1.4532 +;-;-;-;-;-;-;-;-;- + 505 NaN NaN 137405.3 NaN 8617 2703 11318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11323 53.32 NaN 88324 35 0 9441.8 0.261 + 12449 KQLAVYEEF 9 52 563.7923430819438 1125.5701332306876 2 563.7924194335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KQLAVYEEF_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 13.042465956692817 0.2476723265019929 1 YEE{M(Oxidation (M))|F} 4 5 24.742 0 0 2.1982 0 0 539.3442683136589 0 539.3442683136589 0 17.7524439246897 0 0 0 0.6861818737241735 0 0 0 + YEE{M(Oxidation (M))|F} 2.1982 + + 9 NaN NaN 104878.2 NaN 8618 2703 11318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11325 53.325 NaN 960090 35 0 311690 0.327 + 27810 TAYNLVHEL 9 82 530.277135328112 1058.5397177230238 2 530.2611083984375 MULTI HCD FTMS 0 0 0 11324 14259.6826171875 0.04209467007457321 -6 0.123992919921875 1 Unmodified _TAYNLVHEL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 10.799506525563784 0.2670509983294061 1 MV 2 8 17.206 0 0 1.6255 0 0 431.24316118181133 394.17292200260005 825.4160831844114 0 0 0 0 0 0.9247425010840047 0 0 0 MV 1.6255 - 191 + NaN NaN 233159 NaN 8619 2704 11324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11326 53.33 NaN 671150 35 0 79911 0.261 + 15556 LPDQPPYHL 9 88 540.2797881864748 1078.5450234397495 2 540.27978515625 MULTI HCD FTMS 0 0 0 11324 294170.90625 0.28162131482030955 9 -0.20210647583007812 2 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 69.10491478415734 0.009377850133389008 1 {I|L}PDQ[TA]{I|L}Q 8 5 78.454 0 0 7.274 0 0 0 209.0570467584594 209.0570467584594 61.97534431176422 0 0 0 0 0.8494850021680094 1.3979400086720375 1.1549471895720984 0.805462187404089 {I|L}PDQ[TA]{I|L}Q 7.274 - 1206 + NaN NaN 181529.7 NaN 8620 2704 11324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11327 53.333 NaN 888160 35 0 112560 0.261 + 22912 QYQQIISRL 9 81 574.8254120949927 1147.6362712567852 2 574.8245239257812 MULTI HCD FTMS 0 0 0 11324 156169 0.49034009771463455 5 -0.12092208862304688 3 Unmodified _QYQQIISRL_ ENSG00000104881|ENST00000360957|PPP1R13L 59.368380827593164 0.01846506874148156 1 S{I|L}{I|L}QQC(Carbamidomethyl (C)){I|L} 7 7 54.096 0 0 4.7137 0 0 287.1955738751969 0 287.1955738751969 0 7.466371750097153 0 0 0 0.8882104921644451 0 0.2742275032520141 0.7302046884880937 S{I|L}{I|L}QQC(Carbamidomethyl (C)){I|L} 4.7137 - 755 NaN NaN 215632.3 NaN 8621 2704 11324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11328 53.337 NaN 506750 35 0 47467 0.261 + 7588 FYHKYFNYL 9 67 647.8164508336723 1293.6183487341445 2 647.81640625 MULTI HCD FTMS 0 0 0 11324 136550.078125 0.17230933814655103 -6 0.123992919921875 4 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 55.50274090549119 0.023872834264864425 1 [Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L} 9 2 + 57.522 0 0 4.4466 4.4466 81.028 0 0 0 4.137342758552691 37.231106924001125 4.137342758552691 1.2371250542002343 0 1.9247425010840047 0 0 0.7742275032520141 [Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKNY{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKGGY{M(Oxidation (M))|F}Y{I|L};[YN]{M(Oxidation (M))|F}[WK]N{M(Oxidation (M))|F}Y{I|L};[YN]{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}NY{I|L};[YN]{M(Oxidation (M))|F}[HK]Y{M(Oxidation (M))|F}Y{I|L};[YN]{M(Oxidation (M))|F}[WK]GG{M(Oxidation (M))|F}Y{I|L} 4.4466;4.3509;4.1069;3.7347;3.6391;3.3951;3.2475;3.1519;2.9079;2.5357 -;+;-;-;-;-;-;-;-;- + 638 NaN NaN 166126.1 NaN 8622 2704 11324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11329 53.34 NaN 121370 35 0 18515 0.261 + 4495 EYIRSLNQF 9 58 585.3008777744913 1168.5872026157824 2 585.3014526367188 MULTI HCD FTMS 0 0 0 11324 44673.42578125 0.08629031381843567 17 -0.4250144958496094 5 Unmodified _EYIRSLNQF_ ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF 13.042465956692817 0.2476723265019929 1 Y{M(Oxidation (M))|F} 2 7 13.812 0 0 1.182 0 0 840.4157582013687 0 840.4157582013687 0 6.46591250700361 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.182 - 24 NaN NaN 101571.4 NaN 8623 2704 11324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11330 53.343 NaN 152600 35 0 12055 0.262 + 7007 FPWTCAPLG 9 58 496.2391128103569 990.4636726875138 2 496.2393493652344 MULTI HCD FTMS 0 0 0 11324 61238.375 0.5549225987342673 4 -0.098175048828125 6 Unmodified _FPWTCAPLG_ REV__ENSG00000141469|ENST00000321925|SLC14A1;REV__ENST00000591541.2_1_18:43319470-43329913:+|nuORF;REV__nc|ENSG00000141469|Q13336-2|SLC14A1 8.593279151180031 0.2858735984551981 1 ANEQ 4 -1 8.9279 0 0 0.90139 0 0 130.0599994470826 415.19809900455317 545.2580984516358 0 0 0 0 0 0 0 0 0 ANEQ 0.90139 - 77 + NaN NaN 103217.2 NaN 8624 2704 11324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11332 53.348 NaN 1363900 35 0 184570 0.327 + 29507 TYVSGTLRF 9 84 522.2797536028887 1042.5449542725773 2 522.2799072265625 MULTI HCD FTMS 0 0 0 11331 562138.1875 1 0 0 1 Unmodified _TYVSGTLRF_ CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 125.52916310638031 0.0008761121089336018 1 [YT]VSGT{I|L}R{M(Oxidation (M))|F} 9 0 + 105.33 0 0 10.103 10.103 97.138 0 0 0 10.568109453757657 10.568109453757657 10.568109453757657 21.848331157524967 0 2.6747425010840047 1.6989700043360187 1.1747425010840047 0 + + [YT]VSGT{I|L}R{M(Oxidation (M))|F};[YT]V[KT]ER{M(Oxidation (M))|F};{I|L}[HA]EGTVVA{M(Oxidation (M))|F};{[CA]|SS}[Y{I|L}]GT{I|L}R{M(Oxidation (M))|F};[YT][{I|L}P]{[HG]|PP}N{[QN]|[E{I|L}]|[KN]};{[CA]|SS}{[TV]|[{I|L}S]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}DV[HK][VG]{M(Oxidation (M))|F};{I|L}[HA]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{[QN]|[E{I|L}]|[KN]};{[QN]|[E{I|L}]|[KN]}DKK[YT]{M(Oxidation (M))|F} 10.103;8.0073;5.1529;3.7684;2.2749;2.0885;1.4476;1.2588;0.83848 +;-;-;-;-;-;-;-;- + 1050 + NaN NaN 288909.2 NaN 8625 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11333 53.353 NaN 335640 35 0 49715 0.261 + 14615 LFSNIDDII 9 62 525.2793492447811 1048.544145556362 2 525.76806640625 MULTI HCD FTMS 0 0 0 11331 17933.8671875 0.6602370158662272 -1 0.022884368896484375 2 Unmodified _LFSNIDDII_ ENSG00000183111|ENST00000333677|ARHGEF37 21.74664581756881 0.17247014374749275 1 {I|L}PQW 4 8 20.75 0 0 1.979 0 0 0 521.2577608697874 521.2577608697874 13.813506577119623 0 0 0 0 0 0 0 0.5 {I|L}PQW 1.979 - 66 + NaN NaN 141162.6 NaN 8626 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11334 53.356 NaN 126440 35 0 18463 0.262 -1 0 25 424.08158163941823 NaN 0 424.0815124511719 PEAK HCD FTMS 0 0 0 11331 94266.8671875 0.5838054050204281 239 -6.266681671142578 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104648.4 NaN 8627 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11335 53.36 NaN 202090 35 0 34158 0.261 + 13066 KYLDTGGDVF 10 58 557.7752797002436 1113.536006467287 2 557.7734375 MULTI HCD FTMS 0 0 0 11331 86678.7890625 1 0 0 4 Unmodified _KYLDTGGDVF_ ENSG00000101052|ENST00000373030|IFT52 17.44264345198275 0.3479594151168503 1 DT[DN]V{M(Oxidation (M))|F} 6 5 35.393 0 0 3.1784 0 0 404.2430897443375 0 404.2430897443375 0 38.49144313929286 0 0 0 1.3252574989159953 0 0 0 DT[DN]V{M(Oxidation (M))|F} 3.1784 - 36 NaN NaN 110851.6 NaN 8628 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11336 53.363 NaN 213080 35 0 42693 0.262 + 17123 LYLLNWTCLW 10 59 442.23196819642817 1323.6740751894845 3 442.2328186035156 MULTI HCD FTMS 0 0 0 11331 89979.203125 1 0 0 5 Unmodified _LYLLNWTCLW_ ENST00000535871.1_1_12:6958520-6958992:-|nuORF 9.5439744041441 0.42184090036563754 1 W 1 9 21.99 0 0 1.6613 0 0 1119.5843667928032 0 1119.5843667928032 0 18.010299956639813 0 0 0 0.5 0 0 0 + W 1.6613 + + 16 + NaN NaN 122242.3 NaN 8629 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11337 53.366 NaN 81330 35 0 5153.7 0.261 + -1 EEQFQCFML 9 51 624.2565558334968 NaN 0 624.2396240234375 PEAK HCD FTMS 0 0 0 11331 6586.708984375 0.7513302412541378 -1 0.022884368896484375 6 Carbamidomethyl (C),Oxidation (M) _EEQFQC(Carbamidomethyl (C))FM(Oxidation (M))L_ REV__ENSG00000197816|ENST00000529487|CCDC180;REV__nc|ENSG00000197816|Q9P1Z9|CCDC180 2.302733041254933 0.2840881193086663 1 D{M(Oxidation (M))|F} 2 -1 6.4537 0 0 0.51774 0 0 706.2742678175811 275.10712610416255 981.3813939217437 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 0.51774 - 11 + NaN NaN 100313.8 NaN 8630 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11338 53.369 NaN 186040 35 0 27115 0.263 + 16075 LPSQEVQAL 9 51 492.77173675026825 983.5289205673365 2 492.7718200683594 MULTI HCD FTMS 0 0 0 11331 44419.234375 0.2212846277904401 -4 0.08158493041992188 7 Unmodified _LPSQEVQAL_ ENSG00000173992|ENST00000533244|CCS;ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF 26.268140514670165 0.13340543277302316 1 EQA{I|L} 4 5 41.498 0 0 4.2193 0 0 524.2867909162125 0 524.2867909162125 0 27.518572025801546 0 0 0 0.9247425010840047 0 0.3807196863200844 0 EQA{I|L} 4.2193 - 98 NaN NaN 121679.5 NaN 8631 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11339 53.373 NaN 101880 35 0 13161 0.261 + 12450 KQLAVYEEF 9 40 563.7923430819438 1125.5701332306876 2 563.791748046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KQLAVYEEF_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 97274.6 NaN 8632 2705 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11341 53.378 NaN 352050 35 0 88059 0.327 + 3152 EASPVEPQL 9 55 485.24806842239076 968.4815839115815 2 485.2479248046875 MULTI HCD FTMS 0 0 0 11340 184405.28125 0.21910901289478724 7 -0.1496429443359375 1 Unmodified _EASPVEPQL_ ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 43.85829265575387 0.04763305254408404 1 PQ{I|L} 3 6 21.923 0 0 2.2637 0 0 612.2757006437447 0 612.2757006437447 0 4.488474775526186 0 0 0 0.9247425010840047 0 0 0.6989700043360187 + PQ{I|L} 2.2637 + + 49 + NaN NaN 145613.7 NaN 8633 2706 11340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11342 53.382 NaN 612710 35 0 100150 0.261 + 15489 LPDMVVSHL 9 81 513.7679631974995 1025.521373461799 2 513.7681884765625 MULTI HCD FTMS 0 0 0 11340 268179.03125 0.16582546201105064 28 -0.7367591857910156 2 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 99.79894945604345 0.0042691968066200965 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 100.17 0 0 9.7681 9.7681 97.305 0 0 0 79.20486885197654 10.642492736872597 10.642492736872597 26.359921914233908 0 2.559894379144197 1.5228787452803376 0.7742275032520141 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}VP{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PVV{I|L}SH{I|L} 9.7681;7.1977;5.2843;5.1268;4.7127;4.541;4.0826;3.9109;3.5728;3.5101 +;+;-;-;-;-;-;-;-;- + 1300 + NaN NaN 177410 NaN 8634 2706 11340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11343 53.386 NaN 751040 35 0 96850 0.261 + 26613 SWGRNKSQW 9 87 574.7839668292429 NaN 0 574.7726440429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SWGRNKSQW_ LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|28|3|anti-sense 16.942295170755138 0.2079222001251384 1 C(Carbamidomethyl (C))QQ{I|L}{I|L}S 6 8 23.664 0 0 2.0621 0 0 131.01326878329763 284.17209802799067 415.1853668112883 0 0 0 0 0 0 0 0.3807196863200844 0.3252574989159953 C(Carbamidomethyl (C))QQ{I|L}{I|L}S 2.0621 - 208 + NaN NaN 200695.1 NaN 8635 2706 11340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11344 53.389 NaN 1189900 35 0 223390 0.261 + 29367 TYQDIQNTI 9 78 548.2693775600465 1094.5242021868928 2 548.2696533203125 MULTI HCD FTMS 0 0 0 11340 418971.03125 0.10985443575817715 -7 0.15027618408203125 4 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 107.5634045930896 0.0033401844687379516 1 [YT]QD{I|L}QNT{I|L} 9 0 + 95.442 0 0 8.72 8.72 92.592 0 0 0 9.515449934959719 16.478174818886373 9.515449934959719 9.208187539523749 0 2.079689690656103 2 1.0994850021680094 0.3807196863200844 + + [YT]QD{I|L}QNT{I|L};[YT]QD{I|L}QGGT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L};{[QS]|[NT]}{I|L}EYQGGT{I|L} 8.72;7.8787;7.8787;7.8787;7.8506;7.0413;7.0413;7.0413;7.0093;7.0093 +;-;-;-;-;-;-;-;-;- + 1348 NaN NaN 263731.8 NaN 8636 2706 11340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11345 53.392 NaN 105050 35 0 5940.1 0.261 + 256 AFIEKHWTF 9 61 589.8031860986832 1177.5918192641664 2 589.802978515625 MULTI HCD FTMS 0 0 0 11340 46427.484375 0.20824241787122208 11 -0.27112579345703125 5 Unmodified _AFIEKHWTF_ ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 10.799506525563784 0.2670509983294061 1 T{M(Oxidation (M))|F} 2 7 17.959 0 0 1.525 0 0 911.4630132571297 0 911.4630132571297 0 7.156818820794939 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.525 + + 28 NaN NaN 99472.1 NaN 8637 2706 11340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11346 53.396 NaN 153520 35 0 14967 0.261 + 14062 KYVKPLVQK 9 61 551.8527309669998 1101.6909090007996 2 551.8530883789062 MULTI HCD FTMS 0 0 0 11340 31276.291015625 0.48426113458576137 9 -0.21199417114257812 6 Unmodified _KYVKPLVQK_ ENSG00000100473|ENST00000396618|COCH;nc|ENSG00000100473|O43405-2|COCH 3.944395688203298 0.32111559684428237 1 KY 2 7 25.217 0 0 2.2889 0 0 0 807.5088531275426 807.5088531275426 19.731975075880328 0 0 0 0 0.4247425010840047 0 0 0 + KY 2.2889 + + 17 + NaN NaN 111590.8 NaN 8638 2706 11340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11348 53.401 NaN 1101100 35 0 72601 0.327 + 6006 FPDRIMNTF 9 102 578.7763288981632 1155.5381048631264 2 578.7766723632812 MULTI HCD FTMS 0 0 0 11347 586730.5625 0.7947716213107783 1 -0.022861480712890625 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 154.7525637096362 3.8021791163654463E-06 1 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 100.33 0 0 8.6829 8.6829 90.867 0 0 0 72.6204993410987 14.973024840566467 14.973024840566467 7.2024101034500205 0 2.9947026752325154 0 2.5818831717329793 0.5796896906561032 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR[SG]{[ET]|[MV]}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRT{[WS]|[C(Carbamidomethyl (C)){I|L}]}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NS][KC]VNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRTNYP{M(Oxidation (M))|F} 8.6829;8.0596;7.8809;7.6216;7.2627;7.084;5.1244;5.0865;4.4977;4.4562 +;-;+;-;-;-;-;-;-;- + 2539 + NaN NaN 270843.2 NaN 8639 2707 11347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11349 53.405 NaN 669090 35 0 91006 0.261 + 17941 MITDLEERL 9 94 568.2867843198294 1134.5590157064587 2 568.2868041992188 MULTI HCD FTMS 0 0 0 11347 307220.6875 0.2727351061105151 8 -0.18914413452148438 2 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 103.82355648334675 0.003950725192926219 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 108.02 0 0 9.5213 9.5213 89.226 0 0 0 21.265836121537447 79.4305402478657 21.265836121537447 1.3759183738248026 0 2.9247425010840047 2 1.3193415193665468 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}ERE{I|L};{[RE]|[WV]}{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]TE{I|L};{[RE]|[WV]}{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]T{I|L}E;{[RE]|[WV]}{[QN]|[E{I|L}]|[KN]}{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}{I|L} 9.5213;9.4;8.4095;7.5281;6.5843;2.121;1.1305;0.24566 +;-;-;+;-;-;-;- + 1357 NaN NaN 182955 NaN 8640 2707 11347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11350 53.409 NaN 887950 35 0 80996 0.261 + 24139 RYCVQLSQI 9 97 555.2925969675762 1108.5706410019523 2 555.2924194335938 MULTI HCD FTMS 0 0 0 11347 207320.75 0.4761423354864149 11 -0.271148681640625 3 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 63.960520009940105 0.0120409805053046 1 [YV]MQQ{I|L}SQ 8 4 64.563 0 0 5.824 0 0 0 128.07096633572385 128.07096633572385 36.16827851303362 0 0 0 0 1.6549471895720984 1.6989700043360187 0.805462187404089 0.2614393726401688 [YV]MQQ{I|L}SQ 5.824 - 2558 NaN NaN 217481.3 NaN 8641 2707 11347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11351 53.412 NaN 147010 35 0 19163 0.261 + 25173 SALGYLHSL 9 62 480.76120426580894 959.5078555984179 2 480.76123046875 MULTI HCD FTMS 0 0 0 11347 48658.91796875 0.24868892462231942 6 -0.12679290771484375 4 Unmodified _SALGYLHSL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 34.40172386719151 0.0910440009062557 1 {[SA]|[TG]}{I|L}G 4 5 25.49 0 0 2.6565 0 0 0 628.3107393854124 628.3107393854124 25.00508444608478 0 0 0 0 1.079689690656103 0 0 0 + {[SA]|[TG]}{I|L}G 2.6565 + + 56 + NaN NaN 102176.7 NaN 8642 2707 11347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11352 53.415 NaN 281960 35 0 68174 0.261 + 24062 RYAAQLPAL 9 43 501.79017233795776 1001.5657917427155 2 501.7903137207031 MULTI HCD FTMS 0 0 0 11347 94081.15625 0.12077863099495839 -10 0.22220611572265625 5 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 32.30548876998284 0.10066689432505688 1 Q{I|L}PA{I|L} 5 4 52.563 0 0 5.2481 0 0 461.2400074689469 0 461.2400074689469 0 42.105319037595876 0 0 0 1.8494850021680094 0 0 0 + Q{I|L}PA{I|L} 5.2481 + + 77 NaN NaN 126370.9 NaN 8643 2707 11347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11353 53.419 NaN 267030 35 0 19288 0.261 -1 LYANMFERL 9 76 586.791863238975 1171.56917354475 2 586.775146484375 MULTI HCD FTMS 0 0 0 11347 19542.51953125 0.049468557248153674 -8 0.173126220703125 6 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 24.990960013464015 0.14443998892849796 1 [Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[R{I|L}] 9 -1 + 36.353 0 0 3.103 3.103 81.485 0 0 0 7.619974565770036 0.6348625752110664 0.6348625752110664 5.115618994235689 0 0.7302046884880937 1.5228787452803376 0 0 [Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[R{I|L}];[Y{I|L}]ANC{[QV]|[N{I|L}]|[RA]|[KV]}NT{M(Oxidation (M))|F};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[R{I|L}];[Y{I|L}][C(Carbamidomethyl (C))Q]{[QV]|[N{I|L}]|[RA]|[KV]}NT{M(Oxidation (M))|F};YYTH{[QV]|[N{I|L}]|[RA]|[KV]}[KS]{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))G]|[NC]}[YV]E[R{I|L}] 3.103;2.6663;2.317;2.203;1.6259;0.92602 +;-;-;-;-;- + 444 + NaN NaN 128428.8 NaN 8644 2707 11347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11355 53.423 NaN 293140 35 0 13320 0.327 + 22754 QYIDKLNAL 9 79 539.3005680873016 1076.586583241403 2 539.3008422851562 MULTI HCD FTMS 0 0 0 11354 84615.8125 0.5674640353148495 3 -0.058345794677734375 1 Unmodified _QYIDKLNAL_ ENSG00000015133|ENST00000389857|CCDC88C 34.40172386719151 0.0910440009062557 1 [YQ]{I|L}D[K{I|L}]NA{I|L} 9 0 + 27.905 0 0 2.592 2.592 83.728 0 0 0 1.4613685516224102 0.6054368801095329 0.6054368801095329 9.208187539523749 0 0.6382104921644451 1.0457574905606752 0 0.3494850021680094 + + [YQ]{I|L}D[K{I|L}]NA{I|L};[YQ]{I|L}D[K{I|L}]GGA{I|L};[YQ][RK][HK]{[MS]|[{M(Oxidation (M))|F}A]} 2.592;1.7367;0.35725 +;-;- + 372 + NaN NaN 137429.3 NaN 8645 2708 11354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11356 53.428 NaN 363920 35 0 32039 0.261 + 27960 TFAERSSGYF 10 86 582.7695637464891 1163.524574559778 2 582.7702026367188 MULTI HCD FTMS 0 0 0 11354 93010.4765625 0.8184503607059385 -1 0.022861480712890625 2 Unmodified _TFAERSSGYF_ REV__ENSG00000175164|ENST00000538324|ABO;REV__nc|ENSG00000175164|P16442|ABO 8.155526934196011 0.43213520406898465 1 N[KT]SVS{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 36.56 0 0 3.1421 0 0 311.133817512034 0 311.133817512034 0 2.2854006194187235 0 0 0 1.8807196863200843 0 0.3494850021680094 0.4247425010840047 N[KT]SVS{[MS]|[{M(Oxidation (M))|F}A]} 3.1421 - 864 + NaN NaN 155217.5 NaN 8646 2708 11354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11357 53.431 NaN 123410 35 0 15321 0.261 -1 IPMDPEHVEL 10 51 598.2868973092245 1194.559241685249 2 598.2877197265625 MULTI HCD FTMS 0 0 0 11354 50725.89453125 0.31802778932362785 18 -0.4613609313964844 3 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 19.361941925380144 0.3300069447713393 1 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 7 -1 41.827 0 0 3.5015 0 0 0 356.09165369205317 356.09165369205317 37.22311964638479 0 0 0 0 0.7614393726401688 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 3.5015 - 38 + NaN NaN 123359.8 NaN 8647 2708 11354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11358 53.435 NaN 128170 35 0 12268 0.262 + 25174 SALGYLHSL 9 46 480.76120426580894 959.5078555984179 2 480.7608642578125 MULTI HCD FTMS 0 0 0 11354 43819.00390625 0.22395280072740317 7 -0.16628265380859375 4 Unmodified _SALGYLHSL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 22.736283301280096 0.1639198954644489 1 {[SA]|[TG]}{I|L}G 4 5 27.193 0 0 2.834 0 0 0 628.310357649378 628.310357649378 18.60924374808178 0 0 0 0 1.25 0 0 0 + {[SA]|[TG]}{I|L}G 2.834 + + 152 + NaN NaN 101790.7 NaN 8648 2708 11354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11359 53.438 NaN 221090 35 0 21605 0.261 -1 FVCWLCSCCL 10 52 449.85034667034466 1346.529210611234 3 449.8504638671875 MULTI HCD FTMS 0 0 0 11354 81781.4453125 1 0 0 5 3 Carbamidomethyl (C) _FVC(Carbamidomethyl (C))WLC(Carbamidomethyl (C))SC(Carbamidomethyl (C))CL_ ENST00000259371.6_1_9:124546941-124547178:+|nuORF 1.9063754702782614 0.46521295622613185 1 [{M(Oxidation (M))|F}V]A 3 -1 7.4473 0 0 0.55307 0 0 0 1026.3334763185185 1026.3334763185185 -5.740312677277187 0 -5.740312677277187 0 0 0 0 0 0 [{M(Oxidation (M))|F}V]A 0.55307 - 17 NaN NaN 112860.5 NaN 8649 2708 11354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11360 53.441 NaN 85151 35 0 12226 0.261 -1 0 43 621.2886806585165 620.2814041919164 1 621.7753295898438 MULTI HCD FTMS 0 0 0 11354 24031.5390625 0.45707281962096696 -6 0.14058303833007812 6 NaN NaN 1 {I|L}DQ[{M(Oxidation (M))|F}V] 5 -1 + 27.435 0 0 4.423 4.423 86.17 0 0 0 21.95046257204389 6.020599913279625 6.020599913279625 9.542425094393248 0 0 0 0.4247425010840047 0 {I|L}DQ[{M(Oxidation (M))|F}V];{I|L}D[AG][{M(Oxidation (M))|F}V] 4.423;2.8846 -;- 17 + NaN NaN 94671.8 NaN 8650 2708 11354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11362 53.446 NaN 379880 35 0 44217 0.327 + 29871 VFDEAIRAV 9 77 510.2796708466528 1018.5447887601056 2 510.27978515625 MULTI HCD FTMS 0 0 0 11361 179055.421875 0.6886476336807436 3 -0.055057525634765625 1 Unmodified _VFDEAIRAV_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 65.47368725323818 0.010552856507075443 1 V{M(Oxidation (M))|F}DEA{I|L}RAV 9 0 + 89.447 0 0 8.7818 8.7818 89.108 0 0 0 19.444152858125108 2.9659780392387347 2.9659780392387347 2.9659780392387347 0 3.004432191740108 1.154901959985743 0.5 0 + + V{M(Oxidation (M))|F}DEA{I|L}RAV;[{M(Oxidation (M))|F}V]DEA{I|L}RAV 8.7818;8.4906 +;+ + 521 + NaN NaN 133859.7 NaN 8651 2709 11361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11363 53.451 NaN 450400 35 0 78054 0.261 + 29681 VCAGEWAYL 9 66 506.2340287992694 1010.4535046653389 2 506.2340393066406 MULTI HCD FTMS 0 0 0 11361 122135.21875 0.5832922975965608 -13 0.2940101623535156 2 Unmodified _VCAGEWAYL_ REV__ENSG00000012124|ENST00000085219|CD22;REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF;REV__nc|ENSG00000012124|P20273-2|CD22;REV__nc|ENSG00000012124|P20273-3|CD22;REV__nc|ENSG00000012124|P20273-4|CD22 7.910154910731844 0.2910521888787154 1 Y{I|L} 2 -1 25.969 0 0 2.57 0 0 716.2954252837436 0 716.2954252837436 0 8.979400086720375 0 0 0 0.5 0 0 0 Y{I|L} 2.57 + + 117 NaN NaN 142015.1 NaN 8652 2709 11361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11364 53.454 NaN 452870 35 0 50402 0.261 + 16716 LYANMFERL 9 93 586.791863238975 1171.56917354475 2 586.7926635742188 MULTI HCD FTMS 0 0 0 11361 135370.859375 0.342668257079931 -6 0.14046859741210938 3 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 80.6760300276096 0.005633624786464751 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 99.307 0 0 8.4764 8.4764 92.222 0 0 0 79.64123782136497 8.384767769392738 8.384767769392738 9.208187539523749 0 1.9916440611282626 2 0.7742275032520141 0.3054621874040891 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};YY{[QD]|[EN]|[WG]|[KD]|[RS]}RV{[ES]|[DT]|[{I|L}C]}{I|L};YY{[QD]|[EN]|[WG]|[KD]|[RS]}VR{[ES]|[DT]|[{I|L}C]}{I|L};YY{[QD]|[EN]|[WG]|[KD]|[RS]}VWW{I|L};YYT[Q{I|L}]WW{I|L} 8.4764;7.6904;5.4997;2.1279;2.0452;1.1673;1.0351 +;-;+;-;-;-;- + 492 + NaN NaN 171478 NaN 8653 2709 11361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11366 53.459 NaN 1476600 35 0 136380 0.327 + 7589 FYHKYFNYL 9 105 647.8164508336723 1293.6183487341445 2 647.816650390625 MULTI HCD FTMS 0 0 0 11365 792470.5625 1 0 0 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 96.36657018975838 0.004359138328518304 1 [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L} 9 0 + 88.088 0 0 6.8095 6.8095 85.603 0 0 0 13.60563276647278 16.478174818886373 13.60563276647278 2.2577249674798594 0 2.524227503252014 1.0969100130080565 0 0.805462187404089 + + [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKNY{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HK{M(Oxidation (M))|F}YNY{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}YN{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKGGY{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYN{M(Oxidation (M))|F}Y{I|L} 6.8095;6.6349;6.1999;6.0976;5.9565;5.9231;5.8792;5.7577;5.4881;5.36 +;-;-;-;-;-;-;-;-;- + 8188 NaN NaN 306520.6 NaN 8654 2710 11365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11367 53.463 NaN 1216600 35 0 274510 0.262 + 27811 TAYNLVHEL 9 90 530.277135328112 1058.5397177230238 2 530.2612915039062 MULTI HCD FTMS 0 0 0 11365 338752.6875 1 0 0 2 Unmodified _TAYNLVHEL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 96.93554129104106 0.004344229100022454 1 [TA]YN{I|L}VHE{I|L} 9 0 + 95.646 0 0 9.0357 9.0357 90.214 0 0 0 23.65987537940164 11.962724883926654 11.962724883926654 4.4897000433601875 0 2.4247425010840047 1.3979400086720375 0.6989700043360187 1.086696871556164 + + [TA]YN{I|L}VHE{I|L};[TA]YQVVHE{I|L};[TA]YN{I|L}V[QP][PG];[TA]YQVV[QP][PG];[TA]YGG{I|L}VHE{I|L};[TA]Y[AG]VVHE{I|L};[TA][QP]V{I|L}NY[PG];[TA][QP]VV[NP]S{M(Oxidation (M))|F};[TA]YGG{I|L}V[QP][PG];[TA]Y[AG]VV[QP][PG] 9.0357;8.6115;7.7494;7.3253;7.1392;7.0223;6.2758;6.2347;5.857;5.7402 +;-;-;-;-;-;-;-;-;- + 1249 NaN NaN 264111 NaN 8655 2710 11365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11368 53.467 NaN 307280 35 0 45543 0.261 + 12900 KYGFGYQL 8 62 488.25058915870574 974.4866253842115 2 488.25103759765625 MULTI HCD FTMS 0 0 0 11365 179361.421875 0.4247449302410943 -4 0.08124542236328125 3 Unmodified _KYGFGYQL_ ENSG00000145632|ENST00000274289|PLK2;ENSG00000185988|ENST00000454744|PLK5;nc|ENSG00000185988|Q496M5-2|PLK5 64.23631603340823 0.039635161348402365 1 [YK]G{M(Oxidation (M))|F}GYQ{I|L} 8 0 + 48.153 0 0 4.9414 4.9414 86.875 0 0 0 4.6040937697618745 42.2775222611154 4.6040937697618745 9.262137858390808 0 1.2302046884880937 0 0 0.4247425010840047 + + [YK]G{M(Oxidation (M))|F}GYQ{I|L};[YK]G{M(Oxidation (M))|F}GY[AG]{I|L};[YK]G{M(Oxidation (M))|F}G[{M(Oxidation (M))|F}E]K;[K{I|L}][WD][WD]{I|L} 4.9414;3.991;2.3235;0.43933 +;-;-;- + 239 NaN NaN 135154.4 NaN 8656 2710 11365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11369 53.47 NaN 922340 35 0 141230 0.261 -1 WNCMQCLH 8 88 574.7252168816996 1147.435880830199 2 574.7250366210938 MULTI HCD FTMS 0 0 0 11365 169229.1875 0.47020703636408157 -3 0.0583953857421875 4 2 Carbamidomethyl (C) _WNC(Carbamidomethyl (C))MQC(Carbamidomethyl (C))LH_ ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8 5.760428011301431 0.5334459684533844 1 SVS{[DS]|[MA]|[CV]|TT} 5 -1 20.93 0 0 1.8241 0 0 654.2178765350803 0 654.2178765350803 0 3.622731327798544 0 0 0 0 0 0.7742275032520141 0 SVS{[DS]|[MA]|[CV]|TT} 1.8241 - 153 + NaN NaN 241148.7 NaN 8657 2710 11365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11370 53.474 NaN 444300 35 0 39113 0.263 + 33928 YLREETCHYI 10 76 442.87646562523497 1325.607567475905 3 442.8766784667969 MULTI HCD FTMS 0 0 0 11365 111546.625 0.8666658492464215 1 -0.0228118896484375 5 Unmodified _YLREETCHYI_ REV__ENSG00000141401|ENST00000269159|IMPA2;REV__ENST00000383376.9_1_18:12008408-12017827:+|nuORF;REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF;REV__nc|ENSG00000141401|O14732-2|IMPA2 6.1918466704503565 0.44252927588099017 1 {I|L} 1 -1 19.604 0 0 1.4789 0 0 1194.512594796997 0 1194.512594796997 0 2.614393726401687 0 0 0 0.5 0 0 0 {I|L} 1.4789 + + 25 + NaN NaN 161344.2 NaN 8658 2710 11365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11371 53.477 NaN 149180 35 0 12359 0.261 + 14063 KYVKPLVQK 9 62 551.8527309669998 1101.6909090007996 2 551.8514404296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KYVKPLVQK_ ENSG00000100473|ENST00000396618|COCH;nc|ENSG00000100473|O43405-2|COCH 3.944395688203298 0.32111559684428237 1 KY 2 7 17.787 0 0 1.6145 0 0 0 807.5107122675055 807.5107122675055 1.75582814447203 0 0 0 0 0.3807196863200844 0 0 0 + KY 1.6145 + + 17 + NaN NaN 119571.7 NaN 8659 2710 11365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11373 53.482 NaN 7635400 35 0 2059200 0.327 + 7597 FYHKYFNYL 9 90 432.2132815060607 1293.6180151183821 3 432.213623046875 MULTI HCD FTMS 0 0 0 11372 3457461.5 0.8928462784358243 2 -0.04558563232421875 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 34.40172386719151 0.0910440009062557 1 NY{I|L} 3 6 44.693 0 0 3.4549 0 0 885.4186499591513 0 885.4186499591513 0 22.34173665206079 0 0 0 1 0 0 0.8494850021680094 + NY{I|L} 3.4549 + + 310 NaN NaN 702199.6 NaN 8660 2711 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11374 53.486 NaN 781370 35 0 96821 0.261 + 9516 HQKGGITFR 9 85 522.2903131047328 NaN 0 522.2799682617188 PEAK HCD FTMS 0 0 0 11372 14865.55078125 0.4484321117927888 -1 0.0228118896484375 2 Unmodified _HQKGGITFR_ ENST00000446425.2_1_2:24199858-24205795:+|nuORF 10.073929032068715 0.24642998803896465 1 AVSGT{I|L}R 7 6 45.341 0 0 4.3489 0 0 193.09540326828636 162.0557802789672 355.1511835472536 0 0 0 0 0 0.5 0 1.1549471895720984 0.3252574989159953 AVSGT{I|L}R 4.3489 - 371 + NaN NaN 211699.5 NaN 8661 2711 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11375 53.49 NaN 957420 35 0 74064 0.261 -1 NPLHLDYVM 9 101 559.272017288907 1116.529481644614 2 559.2603149414062 MULTI HCD FTMS 0 0 0 11372 174629.875 0.7371111379026792 -2 0.0355987548828125 3 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 30.636539890814138 0.10832830463492794 1 MQ{I|L}DQV{M(Oxidation (M))|F} 7 -1 70.856 0 0 6.3461 0 0 237.11938674140782 0 237.11938674140782 0 18.405753891014385 0 0 0 0.7887254899964358 0 1.0356668758921828 1.079689690656103 MQ{I|L}DQV{M(Oxidation (M))|F} 6.3461 - 7408 NaN NaN 227643.4 NaN 8662 2711 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11376 53.493 NaN 158510 35 0 19458 0.261 + 2942 DYTSSVQGTGL 11 46 564.2645040940381 1126.514455254876 2 564.2656860351562 MULTI HCD FTMS 0 0 0 11372 56043.6796875 0.7053340016722894 -2 0.0355987548828125 4 Unmodified _DYTSSVQGTGL_ REV__ENSG00000224960|ENST00000412172|PPP4R3C;REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C 23.789781309258295 0.24980126723476595 1 NQC(Carbamidomethyl (C))EMT{I|L} 7 -1 55.042 0 0 4.886 0 0 232.1429920880875 0 232.1429920880875 0 42.46178369729593 0 0 0 1 0 0.3807196863200844 0.3054621874040891 NQC(Carbamidomethyl (C))EMT{I|L} 4.886 - 142 NaN NaN 109152.8 NaN 8663 2711 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11377 53.496 NaN 95815 35 0 7197.6 0.261 + 14701 LHALGDSFAGL 11 49 550.7918752087664 NaN 0 550.9925537109375 PEAK HCD FTMS 0 0 0 11372 10791.6123046875 0.30552156144127424 2 -0.04558563232421875 5 Unmodified _LHALGDSFAGL_ REV__ENSG00000223609|ENST00000650601|HBD;REV__ENSG00000244734|ENST00000335295|HBB;REV__ENST00000485743.1_1_11:5247788-5248251:-|nuORF 13.042465956692817 0.3051224235824938 1 Q 1 -1 5.4846 0 0 0.49879 0 0 348.21808814471495 620.2655001919932 968.4835883367082 0 0 0 0 0 0 0 0 0 Q 0.49879 - 15 + NaN NaN 102444.1 NaN 8664 2711 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11379 53.501 NaN 248280 35 0 36498 0.327 + 16076 LPSQEVQAL 9 47 492.77173675026825 983.5289205673365 2 492.7720031738281 MULTI HCD FTMS 0 0 0 11378 114595.3125 0.5708828940861651 3 -0.08847808837890625 1 Unmodified _LPSQEVQAL_ ENSG00000173992|ENST00000533244|CCS;ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF 26.268140514670165 0.13340543277302316 1 VQA{I|L} 4 5 44.68 0 0 4.5429 0 0 554.2709828107437 0 554.2709828107437 0 37.69077524932108 0 0 0 1.4247425010840047 0 0 0 + VQA{I|L} 4.5429 + + 73 NaN NaN 124008.7 NaN 8665 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11380 53.506 NaN 415630 35 0 42120 0.261 + 22887 QYPGRSLVF 9 84 533.7880158805921 1065.561478827984 2 533.78857421875 MULTI HCD FTMS 0 0 0 11378 84308.640625 0.07312548680276616 28 -0.7868385314941406 2 Unmodified _QYPGRSLVF_ ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F} 1 8 20.485 0 0 1.9224 0 0 900.4823905484903 0 900.4823905484903 0 3.7134685823139044 0 0 0 0.3494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.9224 + + 216 + NaN NaN 146960.1 NaN 8666 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11381 53.509 NaN 354810 35 0 21715 0.261 + 15557 LPDQPPYHL 9 75 540.2797881864748 1078.5450234397495 2 540.2798461914062 MULTI HCD FTMS 0 0 0 11378 86148.8203125 0.08247363532954693 17 -0.4722137451171875 3 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 24.990960013464015 0.14443998892849796 1 [YT]Q[RH]QY 7 8 39.991 0 0 3.7079 0 0 0 99.06141953549175 99.06141953549175 10.108856984453354 0 0 0 0 0 2 0.3252574989159953 0.4247425010840047 [YT]Q[RH]QY 3.7079 - 888 NaN NaN 143483.1 NaN 8667 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11382 53.513 NaN 174750 35 0 21141 0.261 + 14117 LAACYMGATLN 11 52 564.2645040940381 1126.514455254876 2 564.26416015625 MULTI HCD FTMS 0 0 0 11378 65071.26953125 0.8189501329729704 -1 0.019458770751953125 4 Unmodified _LAACYMGATLN_ REV__ENSG00000169194|ENST00000304506|IL13 21.536976647645854 0.2694300281126922 1 QNT{I|L} 4 -1 41.938 0 0 3.7228 0 0 652.2707644868142 0 652.2707644868142 0 28.750612633917 0 0 0 1 0 0 0 QNT{I|L} 3.7228 - 32 NaN NaN 121957.1 NaN 8668 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11383 53.516 NaN 122900 35 0 12826 0.261 + 17429 LYRRCLRLS 9 53 590.3419909973444 1178.6694290614887 2 590.3434448242188 MULTI HCD FTMS 0 0 0 11378 19672.73046875 0.44271062848726045 1 -0.026126861572265625 5 Unmodified _LYRRCLRLS_ REV__ENST00000221566.6_1_19:2767199-2767630:-|nuORF 4.3292370932331545 0.3181982124262546 1 {I|L}D[K{I|L}] 4 -1 10.177 0 0 0.86346 0 0 691.3666249005875 0 691.3666249005875 0 3.979400086720375 0 0 0 0 0 0 0 {I|L}D[K{I|L}] 0.86346 - 46 NaN NaN 120120.9 NaN 8669 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11384 53.519 NaN 95781 35 0 11926 0.261 -1 KYLEMIYSM 9 43 605.2800337297824 1208.5455145263647 2 605.280517578125 MULTI HCD FTMS 0 0 0 11378 24411.017578125 0.4120931589146341 -8 0.1759796142578125 6 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 29.84058131909904 0.11198220037953927 1 {I|L}YS{M(Oxidation (M))|F} 4 -1 44.68 0 0 3.697 0 0 680.3227406232437 0 680.3227406232437 0 38.99411293427114 0 0 0 1.4247425010840047 0 0 0 {I|L}YS{M(Oxidation (M))|F} 3.697 + + 35 NaN NaN 96806.6 NaN 8670 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11385 53.522 NaN 63207 35 0 5473.9 0.261 -1 MTIVYKNSI 9 45 542.7898637446034 NaN 0 543.2288208007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _M(Oxidation (M))TIVYKNSI_ ENSG00000005243|ENST00000621465|COPZ2 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90372.9 NaN 8671 2712 11378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11387 53.527 NaN 6272900 35 0 1179100 0.327 + 29368 TYQDIQNTI 9 108 548.2693775600465 1094.5242021868928 2 548.2695922851562 MULTI HCD FTMS 0 0 0 11386 3813874.5 1 0 0 1 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 179.28349886687624 1.1259799814826369E-12 1 [YT]QD{I|L}QNT{I|L} 9 0 + 107.39 0 0 9.8116 9.8116 91.304 0 0 0 5.511259971072491 13.494850021680094 5.511259971072491 5.511259971072491 0 2.4291746928241125 2 1.6248037067706358 0.6549471895720985 + + [YT]QD{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}QGGT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT]QD{I|L}QN{I|L}T;{[QS]|[NT]}{I|L}EYQGGT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};[YT]QD{I|L}[AG]GGT{I|L} 9.8116;9.308;8.9703;8.9703;8.9703;8.5058;8.4667;8.4667;8.133;8.133 +;-;-;-;-;-;-;-;-;- + 10847 NaN NaN 788457 NaN 8672 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11388 53.532 NaN 446990 35 0 74572 0.261 + 15490 LPDMVVSHL 9 76 513.7679631974995 1025.521373461799 2 513.7683715820312 MULTI HCD FTMS 0 0 0 11386 188963.5 0.11684343680663947 35 -0.9496269226074219 2 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.4914307365334 0.004460681868130716 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 82.22 0 0 8.0174 8.0174 95.378 0 0 0 66.73570318966085 9.137342758552691 9.137342758552691 30.300084529637985 0 2.2658715643802765 1.2218487496163564 0.75 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ES]|[DT]|[{I|L}C]}SH{I|L} 8.0174;5.0628 +;- + 283 + NaN NaN 154185.6 NaN 8673 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11389 53.535 NaN 571880 35 0 35893 0.261 + 24140 RYCVQLSQI 9 92 555.2925969675762 1108.5706410019523 2 555.7952880859375 MULTI HCD FTMS 0 0 0 11386 105202.2421875 0.3704187323749789 13 -0.35742950439453125 3 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 55.50274090549119 0.023872834264864425 1 [YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L}SQ{I|L} 9 1 + 65.697 0 0 5.9262 5.9262 85.003 0 0 0 0.7948986667565805 41.8348435778082 0.7948986667565805 4.3933269383026285 0 1.6549471895720984 1.3010299956639813 0.805462187404089 0 [YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L}SQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}Q{I|L}SQ{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L}S[AG]{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[AG]{I|L}SQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}[AG]{I|L}SQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}Q{I|L}S[AG]{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}M{[QN]|[E{I|L}]|[KN]}KSQ{I|L};[YV]{[HG]|PP}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}Q{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QVV{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]{[HG]|PP}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}{I|L} 5.9262;5.5299;5.0956;5.0956;4.6993;4.6993;3.0236;2.2461;1.5297;1.521 -;-;-;-;-;-;-;-;-;- 1984 NaN NaN 194822.9 NaN 8674 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11390 53.539 NaN 93100 35 0 19141 0.261 + 19682 NWLAAEAAL 9 42 479.75308858738634 957.4916242415727 2 479.7532043457031 MULTI HCD FTMS 0 0 0 11386 18970.73828125 0.36070183616316454 1 -0.0361175537109375 4 Unmodified _NWLAAEAAL_ ENSG00000198829|ENST00000362032|SUCNR1 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F}AA{I|L} 4 6 30.433 0 0 3.1784 0 0 537.2900257794937 0 537.2900257794937 0 29.948500216800937 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AA{I|L} 3.1784 - 13 NaN NaN 98200.1 NaN 8675 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11391 53.542 NaN 150660 35 0 8185.1 0.261 + 25709 SKCKLSTANQ 10 67 540.2797881864748 1078.5450234397495 2 541.7854614257812 MULTI HCD FTMS 0 0 0 11386 42663.94140625 0.2838432147713239 17 -0.47560882568359375 5 Unmodified _SKCKLSTANQ_ REV__ENSG00000205832|ENST00000444310|C16orf96 9.5439744041441 0.42184090036563754 1 TNW 3 -1 24.169 0 0 2.2409 0 0 659.3636402383808 0 659.3636402383808 0 8.09410754199897 0 0 0 0 0 0 0.4247425010840047 TNW 2.2409 - 105 + NaN NaN 108587.7 NaN 8676 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11392 53.545 NaN 322040 35 0 84546 0.261 + 11423 IYPVKYTQTF 10 44 630.3373752244877 1258.6601975157753 2 630.3379516601562 MULTI HCD FTMS 0 0 0 11386 77085.4609375 0.22270086288484695 -3 0.06839752197265625 6 Unmodified _IYPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 49.52724829834842 0.07950882623896251 1 [Y{I|L}][VP]KYTQ[{M(Oxidation (M))|F}T] 10 0 + 59.371 0 0 4.717 4.717 86.639 0 0 0 0.4524904595219681 0.4524904595219681 0.4524904595219681 9.617029945021223 0 2.548455006504028 1.6989700043360187 0.4247425010840047 0.3494850021680094 + + [Y{I|L}][VP]KYTQ[{M(Oxidation (M))|F}T];[Y{I|L}][VP]KYT[AG][{M(Oxidation (M))|F}T];[Y{I|L}][VP]KY[NS][Y{I|L}] 4.717;3.9529;2.8706 +;-;- + 47 + NaN NaN 130298.2 NaN 8677 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11393 53.549 NaN 282570 35 0 65624 0.263 + 33972 YLTRDDVL 8 44 497.7637942807225 993.513035628245 2 497.7637939453125 MULTI HCD FTMS 0 0 0 11386 98607.09375 0.17845846999158899 -5 0.10393142700195312 7 Unmodified _YLTRDDVL_ ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE 12.531546534597751 0.5015908124873912 1 V{I|L} 2 6 25.969 0 0 2.6139 0 0 763.3507075517766 0 763.3507075517766 0 11.365006360318688 0 0 0 0.5 0 0 0 + V{I|L} 2.6139 + + 10 NaN NaN 132650.9 NaN 8678 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11394 53.552 NaN 131310 35 0 10487 0.261 -1 YPESESIMM 9 51 551.7250613620629 1101.4355697909257 2 551.7255859375 MULTI HCD FTMS 0 0 0 11386 40510.609375 0.5557643413205678 -8 0.17922210693359375 8 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 26.88365393820708 0.12808753336095696 1 S{I|L}{M(Oxidation (M))|F}M 4 -1 42.027 0 0 3.8156 0 0 605.2318592755875 0 605.2318592755875 0 41.05774396488272 0 0 0 1.2302046884880937 0 0.3807196863200844 0 S{I|L}{M(Oxidation (M))|F}M 3.8156 + + 26 NaN NaN 101006.8 NaN 8679 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11395 53.555 NaN 94985 35 0 16890 0.261 + 11105 IYIAGHPAF 9 40 494.7659709397431 987.5173889462862 2 495.2679748535156 MULTI HCD FTMS 0 0 0 11386 8440.2705078125 0.27972375859763027 -4 0.08118438720703125 9 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 45.7499826716795 0.03894913563566938 1 [Y{I|L}]{I|L}A 4 5 46.242 0 0 4.6827 0 0 0 524.2265719049436 524.2265719049436 27.26280941356464 0 0 0 0 1.305462187404089 1.6989700043360187 0 0 + [Y{I|L}]{I|L}A 4.6827 + + 28 + NaN NaN 103886.3 NaN 8680 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11396 53.559 NaN 144150 35 0 6225.2 0.261 + 30289 VKKKLKIYGN 10 55 595.886474609375 NaN 0 595.886474609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VKKKLKIYGN_ ENST00000527958.5_1_11:117041336-117041564:+|nuORF 0.4007161486938917 0.3398413315442166 1 ES 2 10 6.4537 0 0 0.54243 0 0 237.32006060971315 733.3432486624441 970.6633092721572 0 0 0 0 0 0 0 0 0 ES 0.54243 - 9 + NaN NaN 106972 NaN 8681 2713 11386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11398 53.564 NaN 751530 35 0 44144 0.327 + 6007 FPDRIMNTF 9 96 578.7763288981632 1155.5381048631264 2 578.776611328125 MULTI HCD FTMS 0 0 0 11397 332937.8125 0.45098984431425265 8 -0.209686279296875 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 117.83759599426817 0.001662893820975323 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 2 + 78.814 0 0 6.8205 6.8205 85.146 0 0 0 1.9437005622615544 16.478174818886373 1.9437005622615544 1.249387366082999 0 1.9049471895720984 1.154901959985743 0.535666875892183 0.3807196863200844 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR[{M(Oxidation (M))|F}V]QT{M(Oxidation (M))|F} 6.8205;6.7124;6.6523;6.0236;5.9155;5.5911;5.0208;4.9126;4.373;4.3374 -;+;+;-;-;-;-;-;-;- + 1771 NaN NaN 203427 NaN 8682 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11399 53.568 NaN 1119300 35 0 320820 0.261 + 24063 RYAAQLPAL 9 60 501.79017233795776 1001.5657917427155 2 501.79034423828125 MULTI HCD FTMS 0 0 0 11397 486502.71875 0.6245579315565679 -3 0.08170318603515625 2 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 74.92900055777586 0.007493270374442853 1 [YR]AAQ{I|L}PA{I|L} 9 0 + 78.427 0 0 7.8304 7.8304 91.162 0 0 0 4.762036441594191 52.764706236572465 4.762036441594191 9.208187539523749 0 2.610924374808178 0 0 0.8494850021680094 + + [YR]AAQ{I|L}PA{I|L};[YR]AA[AG]{I|L}PA{I|L} 7.8304;6.911 +;- + 227 NaN NaN 255695.3 NaN 8683 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11400 53.572 NaN 691930 35 0 64955 0.261 + 22756 QYIDKLNEL 9 94 568.3032076279853 1134.5918623227706 2 568.2860107421875 MULTI HCD FTMS 0 0 0 11397 80194.65625 0.382252808324324 -2 0.062244415283203125 3 Unmodified _QYIDKLNEL_ ENSG00000115355|ENST00000436346|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-5|CCDC88A 57.72198328787511 0.020768266150574023 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]{I|L}DTE 9 7 54.869 0 0 4.836 0 0 0 128.1020052274654 128.1020052274654 10.77877717662303 0 0 0 0 0 2 0.5994850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]{I|L}DTE 4.836 - 3588 NaN NaN 184890.2 NaN 8684 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11401 53.575 NaN 654010 35 0 50580 0.261 + 25465 SFDADVQQSL 10 98 555.2586073702955 1108.502661807391 2 555.2589721679688 MULTI HCD FTMS 0 0 0 11397 134071.796875 0.8137344873652772 1 -0.026233673095703125 4 Unmodified _SFDADVQQSL_ REV__nc|ENSG807|P61550|ERVS71-1 55.50274090549119 0.0577772802216 1 MQ{M(Oxidation (M))|F}D{I|L}QS 7 -1 73.62 0 0 6.6414 0 0 0 256.13034998111567 256.13034998111567 36.5472810307033 0 0 0 0 1.4247425010840047 0 2.079689690656103 0.3494850021680094 MQ{M(Oxidation (M))|F}D{I|L}QS 6.6414 - 2669 + NaN NaN 186908.6 NaN 8685 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11402 53.578 NaN 349130 35 0 46106 0.261 -1 CLWTGRCI 8 81 533.251384975981 1064.4882170187618 2 533.2514038085938 MULTI HCD FTMS 0 0 0 11397 68722.234375 0.7237344052440604 -3 0.08170318603515625 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LWTGRC(Carbamidomethyl (C))I_ ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13 14.581692164780916 0.48650662947107914 1 SV{I|L} 3 -1 22.409 0 0 2.1052 0 0 747.2924671857437 0 747.2924671857437 0 5.419562702124452 0 0 0 0 0 0.8252574989159953 0 SV{I|L} 2.1052 - 90 NaN NaN 145429.4 NaN 8686 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11403 53.582 NaN 309100 35 0 34937 0.261 + 2350 DPDGHEICF 9 66 516.7081236044135 1031.4016942756268 2 516.70849609375 MULTI HCD FTMS 0 0 0 11397 77957.1640625 0.5317560426695861 -2 0.062244415283203125 6 Unmodified _DPDGHEICF_ ENSG00000167699|ENST00000301329|GLOD4;ENST00000576239.5_1_17:663415-673427:-|nuORF;nc|ENSG00000167699|Q9HC38|GLOD4 21.74664581756881 0.17247014374749275 1 C{M(Oxidation (M))|F} 2 7 27.959 0 0 2.7108 0 0 763.3143024599957 0 763.3143024599957 0 15.740312677277188 0 0 0 1 0 0 0 + C{M(Oxidation (M))|F} 2.7108 + + 28 NaN NaN 141472.5 NaN 8687 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11404 53.585 NaN 160460 35 0 18788 0.261 -1 MALNSLMSLM 10 65 571.7660917590863 NaN 0 571.7615356445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _MALNSLM(Oxidation (M))SLM(Oxidation (M))_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 8.155526934196011 0.33320428830121973 1 Q{I|L} 2 -1 10.969 0 0 0.96092 0 0 257.99042218829123 639.3628023736936 897.3532245619849 0 0 0 0 0 0 0 0 0 Q{I|L} 0.96092 - 7 + NaN NaN 109088.9 NaN 8688 2714 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11406 53.59 NaN 796130 35 0 89711 0.327 + 16717 LYANMFERL 9 105 586.791863238975 1171.56917354475 2 586.7922973632812 MULTI HCD FTMS 0 0 0 11405 395049.3125 1 0 0 1 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 103.82355648334675 0.003950725192926219 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 105.82 0 0 9.032 9.032 93 0 0 0 79.52028618440272 9.009461452434238 9.009461452434238 9.208187539523749 0 2.587180496500464 2 0.9247425010840047 0.2614393726401688 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}E[VG]{I|L} 9.032;8.246;7.491;7.4715;6.7804;6.6798;6.6047;6.5852;5.9944;5.8939 +;-;-;+;-;-;-;-;-;- + 3913 + NaN NaN 214313.5 NaN 8689 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11407 53.594 NaN 481840 35 0 38895 0.261 + 4535 EYLGKLVRF 9 89 562.826567170973 1123.638581408746 2 562.8268432617188 MULTI HCD FTMS 0 0 0 11405 148381.609375 0.8383808599183251 -1 0.026233673095703125 2 Unmodified _EYLGKLVRF_ ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF 82.5293158979368 0.005033931517079822 1 EY{I|L}GK{I|L}VR{M(Oxidation (M))|F} 9 0 + 90.996 0 0 8.0984 8.0984 97.146 0 0 0 73.03756741013514 13.89506772603255 13.89506772603255 90.99636758357589 0 1.3882104921644451 2 0 0.25 + + EY{I|L}GK{I|L}VR{M(Oxidation (M))|F} 8.0984 + + 239 + NaN NaN 156155.8 NaN 8690 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11408 53.598 NaN 270860 35 0 35303 0.261 + 24808 RYPLLLQKI 9 68 572.3659738446571 1142.7173947561141 2 572.3658447265625 MULTI HCD FTMS 0 0 0 11405 93922.203125 0.35366282441875885 -11 0.26445770263671875 3 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 18.1463463914782 0.20357593197100715 1 Q{I|L}{I|L} 3 7 22.747 0 0 1.9906 0 0 259.18973595865754 526.2763106906024 785.4660466492599 0 0 0 0 0 0.805462187404089 0 0 0 Q{I|L}{I|L} 1.9906 - 85 + NaN NaN 125732.5 NaN 8691 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11409 53.601 NaN 214230 35 0 50138 0.263 -1 RCRDCRWSL 9 51 436.872638309227 1307.596085527881 3 436.87261962890625 MULTI HCD FTMS 0 0 0 11405 72546.3984375 0.4647616651890225 5 -0.14099502563476562 4 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))RDC(Carbamidomethyl (C))RWSL_ chr12:14354815-14423909|112|15.09|0.0|20.53|+|0|TE_info:SVA_C,SVA_C_dup319,SVA,Retroposon,donor,+,14354081,14354815|None,ATF7IP|3;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|3|1|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|20|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|32|3|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|17|2|sense;SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|2|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|17|2|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|37|3|sense 4.897010918128616 0.31389406404703984 1 {I|L} 1 -1 20.485 0 0 1.5666 0 0 1176.5015858714341 0 1176.5015858714341 0 5 0 0 0 0.5 0 0 0 {I|L} 1.5666 + + 9 + NaN NaN 119003.5 NaN 8692 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11410 53.604 NaN 119450 35 0 17750 0.261 -1 LFSPNSCLL 9 52 525.7681078215048 1049.5216627098096 2 525.7680053710938 MULTI HCD FTMS 0 0 0 11405 23663.24609375 0.15193770650120184 7 -0.18345260620117188 5 Carbamidomethyl (C) _LFSPNSC(Carbamidomethyl (C))LL_ ENST00000609439.2_2_7:45849579-45850077:+|nuORF 9.38312468134398 0.279288223203164 1 A{I|L}{I|L} 3 -1 23.188 0 0 2.2093 0 0 734.3051014630875 0 734.3051014630875 0 18.58349385648225 0 0 0 0 0 0 0 A{I|L}{I|L} 2.2093 - 6 NaN NaN 102194.2 NaN 8693 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11411 53.608 NaN 96896 35 0 11363 0.261 + 29872 VFDEAIRAV 9 56 510.2796708466528 1018.5447887601056 2 510.279296875 MULTI HCD FTMS 0 0 0 11405 34066.3828125 0.13101939983849192 9 -0.24258804321289062 6 Unmodified _VFDEAIRAV_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 34.93206674587334 0.08860942999206235 1 {I|L}AEDEV 6 7 43.448 0 0 4.2657 0 0 344.2175465314469 0 344.2175465314469 0 27.96388461952553 0 0 0 1.2302046884880937 0 0 0 {I|L}AEDEV 4.2657 - 77 NaN NaN 103120.5 NaN 8694 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11412 53.611 NaN 255320 35 0 32687 0.261 + 3265 EEALILDNKY 10 55 604.3136430584859 1206.6127331837718 2 604.314453125 MULTI HCD FTMS 0 0 0 11405 116361.90625 0.882554329476543 -4 0.10793685913085938 7 Unmodified _EEALILDNKY_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 100.7086487251713 0.0001804935997887888 1 EEA{I|L}{I|L}{I|L}DNKY 10 0 + 81.272 0 0 6.7355 6.7355 84.976 0 0 0 66.57895593502866 16.53212513775344 16.53212513775344 1.2371250542002343 0 2.392159058960253 0 0 0.6203715150305281 + + EEA{I|L}{I|L}{I|L}DNKY;EEA{I|L}{I|L}{I|L}NDKY;EEA{I|L}{I|L}N{I|L}DKY;EEA{I|L}{I|L}{I|L}DGGKY;EEA{I|L}{I|L}{I|L}GGDKY;EEA{I|L}{I|L}GG{I|L}DKY;EEA{I|L}N{I|L}{I|L}DKY;EEA{I|L}GG{I|L}{I|L}DKY;[QA]{[QD]|[EN]|[WG]|[KD]|[RS]}N{[QV]|[N{I|L}]|[RA]|[KV]}NKY 6.7355;6.633;6.567;5.976;5.8735;5.8074;5.8033;5.0438;3.0215 +;-;-;-;-;-;-;-;- + 474 + NaN NaN 136473.3 NaN 8695 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11413 53.614 NaN 124030 35 0 14723 0.261 -1 YLSEEDYMD 9 45 590.720030627148 NaN 0 590.7196655273438 PEAK HCD FTMS 0 0 0 11405 15424.7998046875 0.518219650659148 1 -0.02954864501953125 8 Oxidation (M) _YLSEEDYM(Oxidation (M))D_ ENSG00000166111|ENST00000610966|SVOP 2.302733041254933 0.2840881193086663 1 D{I|L}M 3 -1 9.9215 0 0 0.84122 0 0 259.9450091769074 557.2923067682249 817.2373159451322 0 0 0 0 0 0 0 0 0 D{I|L}M 0.84122 - 6 + NaN NaN 114698.8 NaN 8696 2715 11405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11415 53.619 NaN 3633300 35 0 1073400 0.327 + 7598 FYHKYFNYL 9 108 432.2132815060607 1293.6180151183821 3 432.2134094238281 MULTI HCD FTMS 0 0 0 11414 1794078.375 0.46329834774470846 7 -0.17684173583984375 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 34.40172386719151 0.0910440009062557 1 NY{I|L} 3 6 43.94 0 0 3.3967 0 0 885.4158086339421 0 885.4158086339421 0 28.121330898074284 0 0 0 0.9247425010840047 0 0 0.8494850021680094 + NY{I|L} 3.3967 + + 204 NaN NaN 630760.8 NaN 8697 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11416 53.624 NaN 802460 35 0 76371 0.261 + 7590 FYHKYFNYL 9 81 647.8164508336723 1293.6183487341445 2 647.816650390625 MULTI HCD FTMS 0 0 0 11414 315011.34375 0.3975054199568454 6 -0.15390396118164062 2 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 86.33184430468982 0.004622086694044132 1 [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L} 9 0 + 74.549 0 0 5.7628 5.7628 84.001 0 0 0 4.292199224104678 4.292199224104678 4.292199224104678 2.984550065040281 0 2.5994850021680094 0 0 0.7742275032520141 + + [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};Y{M(Oxidation (M))|F}HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKNY{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};Y{M(Oxidation (M))|F}HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKGGY{M(Oxidation (M))|F}Y{I|L};[YN]{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}NY{I|L};[YN]{M(Oxidation (M))|F}[WK]N{M(Oxidation (M))|F}Y{I|L} 5.7628;5.5321;5.4311;5.051;4.9544;4.8203;4.7192;4.2425;4.063;3.8323 +;-;-;-;-;-;-;-;-;- + 1268 NaN NaN 206127.4 NaN 8698 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11417 53.627 NaN 427790 35 0 73319 0.264 + 12901 KYGFGYQL 8 65 488.25058915870574 974.4866253842115 2 488.25048828125 MULTI HCD FTMS 0 0 0 11414 296950.09375 0.703206104949541 2 -0.052455902099609375 3 Unmodified _KYGFGYQL_ ENSG00000145632|ENST00000274289|PLK2;ENSG00000185988|ENST00000454744|PLK5;nc|ENSG00000185988|Q496M5-2|PLK5 48.345845343767074 0.13800640434549966 1 [YG]K{M(Oxidation (M))|F}GYQ{I|L} 8 2 + 50.788 0 0 5.2117 5.2117 83.961 0 0 0 5.4722877531575165 16.40978057358332 5.4722877531575165 4.771212547196626 0 0.4247425010840047 1.3979400086720375 0 0.4247425010840047 [YG]K{M(Oxidation (M))|F}GYQ{I|L};[YG]{M(Oxidation (M))|F}KGYQ{I|L};[YK]G{M(Oxidation (M))|F}GYQ{I|L};[YG]K{M(Oxidation (M))|F}GY[AG]{I|L};[YG]{M(Oxidation (M))|F}KGY[AG]{I|L};[YK]G{M(Oxidation (M))|F}GY[AG]{I|L};[YG]{M(Oxidation (M))|F}[YG]KQ{I|L};[YG]K{M(Oxidation (M))|F}G[{M(Oxidation (M))|F}E]K;[YG]{M(Oxidation (M))|F}[YG]K[AG]{I|L};[YG]{M(Oxidation (M))|F}KG[{M(Oxidation (M))|F}E]K 5.2117;4.7221;4.6502;4.2613;3.7717;3.6997;3.1069;2.5486;2.1564;2.059 -;-;+;-;-;-;-;-;-;- + 519 NaN NaN 163890.8 NaN 8699 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11418 53.631 NaN 808900 35 0 154050 0.261 -1 WNCMQCLH 8 88 574.7252168816996 1147.435880830199 2 574.7252197265625 MULTI HCD FTMS 0 0 0 11414 235051.8125 0.6530966541905237 3 -0.07531356811523438 4 2 Carbamidomethyl (C) _WNC(Carbamidomethyl (C))MQC(Carbamidomethyl (C))LH_ ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8 5.760428011301431 0.5334459684533844 1 SVSP[H{I|L}]S{[DS]|[MA]|[CV]|TT} 9 -1 25.261 0 0 2.2015 0 0 219.9903612884595 0 219.9903612884595 0 -0.15719808190696938 -0.15719808190696938 0 0 0.28872548999643577 0 0.7302046884880937 0 SVSP[H{I|L}]S{[DS]|[MA]|[CV]|TT} 2.2015 - 360 + NaN NaN 214158.2 NaN 8700 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11419 53.634 NaN 684800 35 0 180520 0.261 + 27812 TAYNLVHEL 9 76 530.277135328112 1058.5397177230238 2 530.2612915039062 MULTI HCD FTMS 0 0 0 11414 130405.2734375 0.38495716270147673 6 -0.15390396118164062 5 Unmodified _TAYNLVHEL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 74.19965305603844 0.007729275404663812 1 [TA]YN{I|L}VH{[QN]|[E{I|L}]|[KN]} 9 0 + 82.647 0 0 7.8076 7.8076 88.427 0 0 0 16.42667503568731 0.7378621416091846 0.7378621416091846 4.731975075880328 0 2.4247425010840047 1.3979400086720375 0.6989700043360187 1.110924374808178 + + [TA]YN{I|L}VH{[QN]|[E{I|L}]|[KN]};[TA]YQVVH{[QN]|[E{I|L}]|[KN]};[TA]YN{I|L}V[QP][PG];[TA]YQVV[QP][PG];[TA]YGG{I|L}VH{[QN]|[E{I|L}]|[KN]};[TA]Y[AG]VVH{[QN]|[E{I|L}]|[KN]};[TA][QP]V{I|L}NY[PG];[TA]YGG{I|L}V[QP][PG];[TA]Y[AG]VV[QP][PG];[TA][QP]V{I|L}GGY[PG] 7.8076;7.3606;6.9161;6.4691;5.8883;5.7714;5.5444;5.0009;4.884;4.6786 +;-;-;-;-;-;-;-;-;- + 399 NaN NaN 187069.4 NaN 8701 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11420 53.637 NaN 380690 35 0 84866 0.261 -1 HFDMAVYL 8 59 506.2340287992694 1010.4535046653389 2 506.2335510253906 MULTI HCD FTMS 0 0 0 11414 131593.375 0.628462476571573 -6 0.16029739379882812 6 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 VY{I|L} 3 -1 31.555 0 0 3.1228 0 0 617.2256947248062 0 617.2256947248062 0 14.564856298445576 0 0 0 0.7742275032520141 0 0 0 VY{I|L} 3.1228 + + 54 NaN NaN 155873.6 NaN 8702 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11421 53.641 NaN 234380 35 0 21707 0.261 -1 WNWLCLSW 8 70 582.7695637464891 1163.524574559778 2 582.7706298828125 MULTI HCD FTMS 0 0 0 11414 85656.0078125 0.7537343435033677 7 -0.17684173583984375 7 Carbamidomethyl (C) _WNWLC(Carbamidomethyl (C))LSW_ ENST00000558850.5_1_14:102798088-102800954:+|nuORF 7.910154910731844 0.5302565402355366 1 [YQ][Y{I|L}]SSVS{[MS]|[{M(Oxidation (M))|F}A]} 10 -1 [YQ][Y{I|L}]S + + 28.188 -0.4672 -0.071404 2.4226 2.4226 59.01 0 0 0 0 6.7609125905568135 0 0 0 1.5 0 0 0 [YQ][Y{I|L}]SSVS{[MS]|[{M(Oxidation (M))|F}A]} 2.4226 - 259 + NaN NaN 125210.9 NaN 8703 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11422 53.644 NaN 336430 35 0 78984 0.264 + 24554 RYLLKFEQI 9 58 403.9043406784896 1208.6911926356688 3 403.90478515625 MULTI HCD FTMS 0 0 0 11414 68798.90625 0.6320363191251371 -3 0.09189987182617188 8 Unmodified _RYLLKFEQI_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 12.872603262515298 0.2491399024913319 1 Q{I|L} 2 7 30.217 0 0 2.4999 0 0 949.5384493219601 0 949.5384493219601 0 16.237125054200234 0 0 0 0.5 0 0 0.4247425010840047 + Q{I|L} 2.4999 + + 30 NaN NaN 136719.4 NaN 8704 2716 11414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11424 53.649 NaN 772530 35 0 56995 0.327 -1 NPLHLDYVM 9 99 559.272017288907 1116.529481644614 2 559.26025390625 MULTI HCD FTMS 0 0 0 11423 141801.203125 0.5985416080234708 4 -0.1014251708984375 1 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 39.94969957227396 0.06557568441294001 1 MQ{I|L}DQV{M(Oxidation (M))|F} 7 -1 66.675 0 0 5.9716 0 0 237.119432517775 0 237.119432517775 0 17.45136660848459 0 0 0 0.5 0 0.7302046884880937 1.3411290632962718 MQ{I|L}DQV{M(Oxidation (M))|F} 5.9716 - 4708 NaN NaN 221952.2 NaN 8705 2717 11423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11425 53.653 NaN 309720 35 0 35382 0.261 + 15956 LPPTPCLRF 9 82 522.2903131047328 NaN 0 522.27978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LPPTPCLRF_ ENST00000314045.11_1_12:113595922-113596300:-|nuORF 9.38312468134398 0.24977752951804 1 DVSGT{I|L}R 7 7 34.233 0 0 3.2835 0 0 149.1024635123968 162.05605493717033 311.15851844956717 0 0 0 0 0 0.5 0 1.079689690656103 0 DVSGT{I|L}R 3.2835 - 173 + NaN NaN 129120.5 NaN 8706 2717 11423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11426 53.657 NaN 130900 35 0 8736.3 0.261 + 30004 VFMGARNIF 9 51 527.7795730697981 NaN 0 527.7666625976562 PEAK HCD FTMS 0 0 0 11423 6424.724609375 0.24657193648821418 5 -0.12432098388671875 3 Unmodified _VFMGARNIF_ REV__ENSG00000166986|ENST00000262027|MARS1;REV__ENST00000537638.6_1_12:57905855-57911076:+|nuORF 7.289230182591677 0.2599242500475609 1 AE 2 -1 10.969 0 0 1.0412 0 0 131.12593086379417 719.3147066705686 850.4406375343628 0 0 0 0 0 0 0 0 0 AE 1.0412 - 9 + NaN NaN 111262.8 NaN 8707 2717 11423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11427 53.66 NaN 188160 35 0 38504 0.262 -1 FVKFRCMIQD 10 40 434.8819931082321 NaN 0 434.8819580078125 PEAK HCD FTMS 0 0 0 11423 45762.76953125 0.6531710993562216 -32 0.7886581420898438 4 Oxidation (M) _FVKFRCM(Oxidation (M))IQD_ ENSG00000197771|ENST00000369077|MCMBP;ENST00000466047.5_1_10:121609046-121633060:-|nuORF;nc|ENSG00000197771|Q9BTE3|MCMBP 2.0860074813731053 0.33839895573887124 1 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.28513 0 0 555.602840120958 162.05622278385002 717.659062904808 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.28513 + + 1 + NaN NaN 108241.3 NaN 8708 2717 11423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11428 53.664 NaN 188030 35 0 14639 0.261 + -1 MMIPFVYMM 9 63 597.755561789862 NaN 0 597.7734985351562 PEAK HCD FTMS 0 0 0 11423 21490.423828125 1 0 0 5 2 Oxidation (M) _M(Oxidation (M))MIPFVYMM(Oxidation (M))_ REV__tr|U7T0Y6|U7T0Y6_FUSNUInnermembraneproteinoxaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00741PE=3SV=1 5.230669730166228 0.26989974671959066 1 MY 2 -1 9.464 0 0 0.79296 0 0 165.04329977044478 731.3267974079157 896.3700971783605 0 0 0 0 0 0 0 0 0 MY 0.79296 - 16 + NaN NaN 119024.2 NaN 8709 2717 11423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11429 53.667 NaN 70402 35 0 10773 0.261 + 14396 LEIQWWYLK 9 39 639.849358618175 NaN 0 639.848876953125 PEAK HCD FTMS 0 0 0 11423 21473.75390625 0.592390461589424 2 -0.0457305908203125 6 Unmodified _LEIQWWYLK_ ENSG00000187135|ENST00000335523|VSTM2B 5.296884461304476 0.2695788793730278 1 Y 1 8 10.242 0 0 0.80163 0 0 259.1911312562392 852.4112032525999 1111.602334508839 0 0 0 0 0 0.3252574989159953 0 0 0 + Y 0.80163 + + 2 + NaN NaN 103630 NaN 8710 2717 11423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11431 53.672 NaN 4007600 35 0 737990 0.327 + 29369 TYQDIQNTI 9 104 548.2693775600465 1094.5242021868928 2 548.2695922851562 MULTI HCD FTMS 0 0 0 11430 2329951.75 0.6109146354973138 5 -0.12438583374023438 1 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 128.57297698046145 0.0006915168155602875 1 [YT]QD{I|L}QNT{I|L} 9 0 + 99.338 0 0 9.0759 9.0759 91.211 0 0 0 6.742340564755267 14.841284356197235 6.742340564755267 6.742340564755267 0 2.024227503252014 2 1.7249073637206092 0.3252574989159953 + + [YT]QD{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}QGGT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}QN{I|L}T;{[QS]|[NT]}{I|L}EY[AG]NT{I|L};{[QS]|[NT]}{I|L}EYQGGT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][AG]D{I|L}QGGT{I|L} 9.0759;8.4599;8.2346;8.2346;8.2346;7.7199;7.6186;7.6186;7.3973;7.3973 +;-;-;-;-;-;-;-;-;- + 7813 NaN NaN 626636.5 NaN 8711 2718 11430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11432 53.676 NaN 1652000 35 0 350450 0.261 + 28430 TPINEGQTVL 10 81 536.2878987978731 1070.5612446625462 2 536.2879028320312 MULTI HCD FTMS 0 0 0 11430 666185.625 0.9603107382935503 -1 0.0228729248046875 2 Unmodified _TPINEGQTVL_ ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 51.487983226225225 0.0723780666322865 1 {[TV]|[{I|L}S]}[QP]E{[QG]|[NA]}TV{I|L} 10 3 + 62.515 0 0 5.8395 5.8395 92.215 0 0 0 13.723637474483468 39.06418474327175 13.723637474483468 42.6869160710703 0 1.555462187404089 1.6989700043360187 1.2302046884880937 0.3054621874040891 {[TV]|[{I|L}S]}[QP]E{[QG]|[NA]}TV{I|L};{[TV]|[{I|L}S]}[YG][KP]N[RH];{[HG]|PP}[KC][KP]SCV{I|L} 5.8395;1.8521;0.18125 -;-;- 492 NaN NaN 346376.4 NaN 8712 2718 11430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11433 53.68 NaN 195090 35 0 59721 0.261 -1 SMPRFFQVL 9 55 570.7977321529407 1139.5809113726814 2 570.7977905273438 MULTI HCD FTMS 0 0 0 11430 149454.0625 0.8137805317862894 -1 0.0228729248046875 3 Oxidation (M) _SM(Oxidation (M))PRFFQVL_ ENSG00000205978|ENST00000382554|NYNRIN;NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant 6.2057823575117 0.30397260197431997 1 {I|L}QV[RH][SG] 7 -1 17.491 0 0 1.5349 0 0 344.16783339668126 0 344.16783339668126 0 2.7861446540576633 0 0 0 0 0 0 0 {I|L}QV[RH][SG] 1.5349 - 61 NaN NaN 115888.2 NaN 8713 2718 11430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11434 53.683 NaN 357000 35 0 57402 0.261 + 15491 LPDMVVSHL 9 67 513.7679631974995 1025.521373461799 2 513.7679443359375 MULTI HCD FTMS 0 0 0 11430 144492.4375 0.08934525974629255 40 -0.9530448913574219 4 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 78.7280429016045 0.006263961847259105 1 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 80.728 0 0 7.8719 7.8719 93.22 0 0 0 63.738438516874254 10.642492736872597 10.642492736872597 13.623504299768996 0 2.110924374808178 1.2218487496163564 0.4247425010840047 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}P[DV]{M(Oxidation (M))|F}VSH{I|L};{I|L}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ES]|[DT]|[{I|L}C]}SH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{I|L}P[DV][VS]{M(Oxidation (M))|F}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}SH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[CP]|[EA]}[DV]H{I|L} 7.8719;6.5435;4.7936;4.6007;4.0435;3.8854;3.0803;1.4185 +;-;-;-;-;-;-;- + 568 + NaN NaN 153734.4 NaN 8714 2718 11430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11435 53.686 NaN 192130 35 0 12736 0.261 + 15558 LPDQPPYHL 9 60 540.2797881864748 1078.5450234397495 2 540.2796020507812 MULTI HCD FTMS 0 0 0 11430 34203.11328125 0.03274397817242886 23 -0.63592529296875 5 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 14.405379775768559 0.2358970535022398 1 [HK]Q{NN|[MP]|[D{I|L}]|[EV]}Q 6 7 20.418 0 0 1.8931 0 0 0 326.1357515924438 326.1357515924438 0.9543872825297939 0 0 0 0 0 0 0.3494850021680094 0.4247425010840047 [HK]Q{NN|[MP]|[D{I|L}]|[EV]}Q 1.8931 - 121 + NaN NaN 110247.4 NaN 8715 2718 11430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11436 53.69 NaN 92120 35 0 17896 0.261 -1 0 41 621.2886806585165 620.2814041919164 1 621.6231689453125 MULTI HCD FTMS 0 0 0 11430 31650.34765625 0.601980322924898 3 -0.07855224609375 6 NaN NaN 1 C(Carbamidomethyl (C)){I|L} 2 -1 17.959 0 0 2.8953 0 0 329.15864760566564 0 329.15864760566564 0 6.251837901751003 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){I|L} 2.8953 - 7 NaN NaN 100329.9 NaN 8716 2718 11430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11438 53.695 NaN 784170 35 0 207740 0.326 + 33973 YLTRDDVL 8 55 497.7637942807225 993.513035628245 2 497.7640380859375 MULTI HCD FTMS 0 0 0 11437 548285.6875 0.9922838326176354 1 -0.0361328125 1 Unmodified _YLTRDDVL_ ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE 24.67388899826682 0.4122521268485776 1 [Y{I|L}]V[C(Carbamidomethyl (C))D]{I|L}V 7 4 44.626 0 0 4.4917 0 0 0 128.0718962526793 128.0718962526793 29.141522612910364 0 0 0 0 0.8807196863200843 1.5228787452803376 0.7614393726401688 0 [Y{I|L}]V[C(Carbamidomethyl (C))D]{I|L}V 4.4917 - 49 NaN NaN 212765.6 NaN 8717 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11439 53.699 NaN 501160 35 0 137990 0.261 + 11424 IYPVKYTQTF 10 57 630.3373752244877 1258.6601975157753 2 630.3375244140625 MULTI HCD FTMS 0 0 0 11437 251184.171875 0.7256742210432242 3 -0.07859039306640625 2 Unmodified _IYPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 77.04852534044906 0.009233459585674255 1 [Y{I|L}]PVKYTQT{M(Oxidation (M))|F} 10 0 + 98.051 0 0 7.7901 7.7901 92.768 0 0 0 78.58735303473303 13.379231027444405 13.379231027444405 12.417114474659215 0 2.885151878060192 2 1.2302046884880937 0.3252574989159953 + + [Y{I|L}]PVKYTQT{M(Oxidation (M))|F};[Y{I|L}]PVKYT[AG]T{M(Oxidation (M))|F};[Y{I|L}][YV][KP]TQT{M(Oxidation (M))|F};[Y{I|L}]PVKY[NS][Y{I|L}] 7.7901;6.8036;4.1641;3.0626 +;-;-;- + 111 + NaN NaN 162196.6 NaN 8718 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11440 53.703 NaN 580300 35 0 85769 0.261 + 6008 FPDRIMNTF 9 91 578.7763288981632 1155.5381048631264 2 578.7766723632812 MULTI HCD FTMS 0 0 0 11437 166260.734375 0.22521293736005 13 -0.3608512878417969 3 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 84.5221896805406 0.004669506596793478 1 {M(Oxidation (M))|F}PD{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 2 + 62.056 0 0 5.3703 5.3703 84.835 0 0 0 9.436974992327123 6.215686636715056 6.215686636715056 6.215686636715056 0 2.504432191740108 0 1.5044321917401078 0.5010912013506126 {M(Oxidation (M))|F}PD{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}M{I|L}[VG]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}M{I|L}[VG]{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};MNAP[KS]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YQ][KQ]NT{M(Oxidation (M))|F} 5.3703;4.8324;4.366;4.0355;3.9853;3.7197;3.1922;2.9228;2.7268;2.6416 -;-;-;-;-;-;-;-;-;- 849 + NaN NaN 171301.3 NaN 8719 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11441 53.706 NaN 391500 35 0 44344 0.261 + 27153 SYNEHWNYL 9 72 613.2669517182799 1224.5193505033596 2 613.2669067382812 MULTI HCD FTMS 0 0 0 11437 134222.140625 0.3729991964436836 -4 0.10486221313476562 4 Unmodified _SYNEHWNYL_ ENSG00000111321|ENST00000228918|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR 45.69961567697781 0.039180348357221985 1 WNY{I|L} 4 5 49.68 0 0 4.0571 0 0 630.2392187026545 0 630.2392187026545 0 39.93115345883339 0 0 0 0.9247425010840047 0 0 0.8494850021680094 + WNY{I|L} 4.0571 + + 198 NaN NaN 164404.9 NaN 8720 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11442 53.709 NaN 238160 35 0 30367 0.261 + 32083 VYQVLQEHL 9 73 564.8059869907808 1127.5974210483614 2 565.2899169921875 MULTI HCD FTMS 0 0 0 11437 7455.62890625 0.2738213032299919 1 -0.0361328125 5 Unmodified _VYQVLQEHL_ ENSG00000101144|ENST00000395863|BMP7 21.536976647645854 0.1742816388551942 1 [YV]T{M(Oxidation (M))|F}KVE{[QD]|[EN]|[WG]|[KD]|[RS]} 9 6 + 37.278 0 0 3.306 3.306 83.147 0 0 0 8.965912507003612 2.730012720637376 2.730012720637376 8.965912507003612 0 0.4247425010840047 1.6989700043360187 0 0 [YV]T{M(Oxidation (M))|F}KVE{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]V{M(Oxidation (M))|F}KVE{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]QV{I|L}[YT]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]T{M(Oxidation (M))|F}T[RV]{[QD]|[EN]|[WG]|[KD]|[RS]};{[TV]|[{I|L}S]}Y{M(Oxidation (M))|F}KVE{[QD]|[EN]|[WG]|[KD]|[RS]};[YT][{I|L}P]K[YT]{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]V{M(Oxidation (M))|F}T[RV]{[QD]|[EN]|[WG]|[KD]|[RS]};[Q{I|L}]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}VE{[QD]|[EN]|[WG]|[KD]|[RS]};{[TV]|[{I|L}S]}Y{M(Oxidation (M))|F}T[RV]{[QD]|[EN]|[WG]|[KD]|[RS]} 3.306;2.5108;2.3529;1.9111;1.7993;1.2326;1.116;0.49385;0.40443 -;-;-;-;-;-;-;-;- 779 NaN NaN 137146.5 NaN 8721 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11443 53.713 NaN 180670 35 0 20339 0.261 -1 YPESESIMM 9 50 551.7250613620629 1101.4355697909257 2 551.7246704101562 MULTI HCD FTMS 0 0 0 11437 62579.50390625 0.8585271193202073 -2 0.0457305908203125 6 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 34.10243960390752 0.09241788333544565 1 S{I|L}{M(Oxidation (M))|F}M 4 -1 50.037 0 0 4.5429 0 0 605.2352815742827 0 605.2352815742827 0 39.23516269895728 0 0 0 1.305462187404089 0 0.805462187404089 0 S{I|L}{M(Oxidation (M))|F}M 4.5429 + + 68 NaN NaN 124676.7 NaN 8722 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11444 53.716 NaN 222900 35 0 24085 0.261 + 33039 YCRWIYNF 8 64 582.7695637464891 1163.524574559778 2 582.7677001953125 MULTI HCD FTMS 0 0 0 11437 40437.73046875 0.35583384056782397 10 -0.2788734436035156 7 Unmodified _YCRWIYNF_ ENSG00000059769|ENST00000313525|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;nc|ENSG00000059769|Q9H1X3-2|DNAJC25 8.593279151180031 0.5292430274356741 1 SVSS{M(Oxidation (M))|F} 5 7 22.256 0 0 1.9128 0 0 236.07917116312575 417.1938570611938 653.2730282243195 0 0 0 0 0 1.2614393726401687 0 0 0 SVSS{M(Oxidation (M))|F} 1.9128 - 178 + NaN NaN 144706.5 NaN 8723 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11445 53.719 NaN 191960 35 0 39472 0.262 + 3988 ERFTLKQYIEF 11 54 491.92948793265805 1472.7666343981741 3 491.929931640625 MULTI HCD FTMS 0 0 0 11437 25516.96484375 0.5820796081273721 2 -0.055694580078125 8 Unmodified _ERFTLKQYIEF_ REV__NCAM2|p.L109F|1|0.14|ENSG00000154654|chr21:21284390-21284390|G/T|missense_variant 2.6312355333042263 0.4073809613003177 1 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.7633 0 0 1206.6407016362584 0 1206.6407016362584 0 18.979400086720375 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 1.7633 - 25 + NaN NaN 119675.6 NaN 8724 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11446 53.723 NaN 71287 35 0 11398 0.261 + 11106 IYIAGHPAF 9 36 494.7659709397431 987.5173889462862 2 495.2662658691406 MULTI HCD FTMS 0 0 0 11437 22007.701171875 0.7293696196338906 1 -0.0361328125 9 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 36.466142684027034 0.08156716203802528 1 {I|L}Y{I|L}[HQ][PA]{M(Oxidation (M))|F} 8 2 + 59.385 0 0 6.0136 6.0136 85.298 0 0 0 21.40978057358332 4.771212547196626 4.771212547196626 4.771212547196626 0 1 1.6989700043360187 0 0 {I|L}Y{I|L}[HQ][PA]{M(Oxidation (M))|F};{I|L}Y{I|L}[HQ]{M(Oxidation (M))|F}[PA] 6.0136;5.5305 -;- 35 + NaN NaN 104396.1 NaN 8725 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11447 53.726 NaN 71354 35 0 6362.2 0.261 -1 TYSLRCHDC 9 45 606.249559398213 1210.484565863226 2 606.7513427734375 MULTI HCD FTMS 0 0 0 11437 15639.9345703125 0.4796759779909579 2 -0.055694580078125 10 2 Carbamidomethyl (C) _TYSLRC(Carbamidomethyl (C))HDC(Carbamidomethyl (C))_ ENSG00000104499|ENST00000220940|GML 1.844237919475145 0.33703635659052655 1 V 1 -1 6.9897 0 0 0.57743 0 0 162.97780424388844 945.4204805963499 1108.3982848402384 0 0 0 0 0 0 0 0 0 V 0.57743 - 24 + NaN NaN 95355.8 NaN 8726 2719 11437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11449 53.731 NaN 1383500 35 0 377420 0.327 + 24064 RYAAQLPAL 9 67 501.79017233795776 1001.5657917427155 2 501.79022216796875 MULTI HCD FTMS 0 0 0 11448 617856.1875 0.7931856649350473 3 -0.06539535522460938 1 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 78.14939416004806 0.006451203201226903 1 [YR]AAQ{I|L}PA{I|L} 9 0 + 75.015 0 0 7.4898 7.4898 90.65 0 0 0 2.632192780232785 39.61635608164464 2.632192780232785 9.208187539523749 0 2.2302046884880937 0 0 1.110924374808178 + + [YR]AAQ{I|L}PA{I|L};[YR]AA[AG]{I|L}PA{I|L};[PA]{I|L}{I|L}[NG]HPA{I|L};[PA]{I|L}[VG][HQ]PA{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[QA]Y{I|L}PA{I|L};[PA]{I|L}R[YQ]AA{I|L};[Q{I|L}][VP][HQ]PA{I|L};[PA]{I|L}[VG][YQ][RV] 7.4898;6.5704;6.2672;5.2687;5.0489;4.7828;3.2208;0.45532 +;-;-;-;-;-;-;- + 738 NaN NaN 300669.9 NaN 8727 2720 11448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11450 53.735 NaN 1621700 35 0 239690 0.261 + 22757 QYIDKLNEL 9 109 568.3032076279853 1134.5918623227706 2 568.2871704101562 MULTI HCD FTMS 0 0 0 11448 125565.6328125 0.5985163852061404 4 -0.101593017578125 2 Unmodified _QYIDKLNEL_ ENSG00000115355|ENST00000436346|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-5|CCDC88A 17.11289562659939 0.2125047172822487 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E 9 6 + 81.882 0 0 7.2169 7.2169 93.581 0 0 0 23.411290632962718 10.457574905606748 10.457574905606748 23.411290632962718 0 0 2 1.6298545532927078 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EE[R{I|L}];{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DT{I|L}E;{M(Oxidation (M))|F}{I|L}RE{I|L}{[ET]|[MV]}{NN|[MP]|[D{I|L}]|[EV]};[YV]VD{I|L}EE[R{I|L}];{M(Oxidation (M))|F}{I|L}T[{I|L}A]{I|L}{[ET]|[MV]}{NN|[MP]|[D{I|L}]|[EV]};{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]T{I|L}E;[YN][QA]{I|L}[{I|L}A]T{I|L}E;{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}[{M(Oxidation (M))|F}V]T{I|L}E;[VP]TD{[QN]|[E{I|L}]|[KN]}[VS][Y{I|L}] 7.2169;5.1534;3.3456;3.0915;3.041;2.2136;1.5836;1.5405;0.95898;0.3616 -;-;-;-;-;-;-;-;-;- 5537 NaN NaN 329355.5 NaN 8728 2720 11448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11451 53.739 NaN 712670 35 0 40597 0.261 + 20129 NYIRITSEI 9 92 554.80326574615 1107.5919785591 2 554.8033447265625 MULTI HCD FTMS 0 0 0 11448 178128.640625 0.6997957743020601 -2 0.058990478515625 3 Unmodified _NYIRITSEI_ ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 65.47368725323818 0.010552856507075443 1 [YN]{I|L}[R{I|L}]TSE{I|L} 9 0 + 74.169 0 0 6.6964 6.6964 94.609 0 0 0 19.325944050892645 39.2645235721658 19.325944050892645 74.16899416562745 0 1.7302046884880937 2 0 0.5774509799928715 + + [YN]{I|L}[R{I|L}]TSE{I|L} 6.6964 + + 588 NaN NaN 196036.6 NaN 8729 2720 11448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11452 53.742 NaN 472300 35 0 35487 0.261 + 2351 DPDGHEICF 9 81 516.7081236044135 1031.4016942756268 2 516.7083129882812 MULTI HCD FTMS 0 0 0 11448 136950.109375 0.9341546614757859 4 -0.101593017578125 4 Unmodified _DPDGHEICF_ ENSG00000167699|ENST00000301329|GLOD4;ENST00000576239.5_1_17:663415-673427:-|nuORF;nc|ENSG00000167699|Q9HC38|GLOD4 21.74664581756881 0.17247014374749275 1 {I|L}C{M(Oxidation (M))|F} 3 6 33.188 0 0 3.2177 0 0 650.2299671857437 0 650.2299671857437 0 23.521825181113627 0 0 0 1 0 0 0 + {I|L}C{M(Oxidation (M))|F} 3.2177 + + 46 NaN NaN 167352.6 NaN 8730 2720 11448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11453 53.745 NaN 143670 35 0 14893 0.261 + -1 FPETCYMYL 9 55 620.2573520260562 1238.5001511189123 2 620.75830078125 MULTI HCD FTMS 0 0 0 11448 36606.171875 0.5482122691421916 -4 0.11144638061523438 5 Carbamidomethyl (C),Oxidation (M) _FPETC(Carbamidomethyl (C))YM(Oxidation (M))YL_ REV__ENSG00000105726|ENST00000357324|ATP13A1;REV__ENST00000473243.5_1_19:19764878-19766320:-|nuORF;REV__ENST00000496082.5_1_19:19764878-19766379:-|nuORF;REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1 11.640296217721598 0.25978676193971967 1 Y{I|L} 2 -1 25.217 0 0 2.0361 0 0 944.3401299492775 0 944.3401299492775 0 15.55076269579011 0 0 0 0.4247425010840047 0 0 0 Y{I|L} 2.0361 + + 22 NaN NaN 125120.3 NaN 8731 2720 11448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11455 53.75 NaN 2159600 35 0 630980 0.327 + 7599 FYHKYFNYL 9 84 432.2132815060607 1293.6180151183821 3 432.21307373046875 MULTI HCD FTMS 0 0 0 11454 932786.375 0.24088043886949811 12 -0.33467864990234375 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 34.40172386719151 0.0910440009062557 1 NY{I|L} 3 6 43.5 0 0 3.3627 0 0 885.4178702230354 0 885.4178702230354 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0.8494850021680094 + NY{I|L} 3.3627 + + 170 NaN NaN 426681 NaN 8732 2721 11454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11456 53.755 NaN 317940 35 0 20196 0.261 + 1090 AYIERMNYI 9 79 586.791863238975 1171.56917354475 2 586.7921752929688 MULTI HCD FTMS 0 0 0 11454 121295.6484375 0.30703925965571705 6 -0.16405487060546875 2 Unmodified _AYIERMNYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 57.72198328787511 0.020768266150574023 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 6 + 79.452 0 0 6.7817 6.7817 89.381 0 0 0 51.92516497630791 8.384767769392738 8.384767769392738 9.208187539523749 0 1.4604093769761877 2 0.8807196863200843 0 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{[RE]|[WV]}MNY{I|L};{I|L}YAN{M(Oxidation (M))|F}{[RE]|[WV]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[RE]|[WV]}MNY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{[RE]|[WV]}MGGY{I|L};{I|L}YAGG{M(Oxidation (M))|F}{[RE]|[WV]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[RE]|[WV]}MGGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 6.7817;5.9957;5.5144;5.2526;5.0429;4.9641;4.7284;4.4666;4.2569;4.1781 -;-;-;-;+;-;-;-;-;- + 895 + NaN NaN 130004.7 NaN 8733 2721 11454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11457 53.758 NaN 334080 35 0 127540 0.264 + 22635 QVPPQRCPVEI 11 53 422.56081054777314 1264.6606022435194 3 422.56103515625 MULTI HCD FTMS 0 0 0 11454 85080.1171875 0.5694320056588399 -1 0.019561767578125 3 Unmodified _QVPPQRCPVEI_ ENSG00000203786|ENST00000606109|KPRP 4.11662792887243 0.40086653484894175 1 {[QV]|[N{I|L}]|[RA]|[KV]}S 3 9 17.319 0 0 1.3695 0 0 0 947.4775937808819 947.4775937808819 1.8348435778082042 0 0 0 0 0.5 0 0 0.4247425010840047 {[QV]|[N{I|L}]|[RA]|[KV]}S 1.3695 - 20 NaN NaN 135053.3 NaN 8734 2721 11454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11458 53.762 NaN 256820 35 0 42582 0.261 + 4536 EYLGKLVRF 9 66 562.826567170973 1123.638581408746 2 562.826904296875 MULTI HCD FTMS 0 0 0 11454 68893.5703125 0.38926017155848996 5 -0.134521484375 4 Unmodified _EYLGKLVRF_ ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF 41.8396318013385 0.056899836730939755 1 {I|L}GK{I|L}VR 6 3 34.887 0 0 3.1048 0 0 292.1064084994246 162.05507837467033 454.161486874095 0 0 0 0 0 0.7887254899964358 0 0 0 + {I|L}GK{I|L}VR 3.1048 + + 78 + NaN NaN 125004.2 NaN 8735 2721 11454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11459 53.765 NaN 110500 35 0 13596 0.261 + 3266 EEALILDNKY 10 46 604.3136430584859 1206.6127331837718 2 604.3139038085938 MULTI HCD FTMS 0 0 0 11454 102348.0546875 0.7762653748890017 2 -0.045833587646484375 5 Unmodified _EEALILDNKY_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 57.24910588100465 0.05142613675551719 1 {[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}{I|L}{I|L}D{[QN]|[E{I|L}]|[KN]}Y 10 2 + 49.103 0 0 4.0695 4.0695 82.688 0 0 0 11.785437214322343 20.20181229336984 11.785437214322343 6.020599913279625 0 2.274227503252014 0 1.9247425010840047 0 {[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}{I|L}{I|L}D{[QN]|[E{I|L}]|[KN]}Y;{[QN]|[E{I|L}]|[KN]}DVV{I|L}D{[QN]|[E{I|L}]|[KN]}Y;{[QN]|[E{I|L}]|[KN]}D{I|L}VVD{[QN]|[E{I|L}]|[KN]}Y 4.0695;3.5705;2.8877 -;-;- 150 NaN NaN 105288.2 NaN 8736 2721 11454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11460 53.768 NaN 140110 35 0 24039 0.261 -1 KYMYFTVVM 9 39 607.2853232425667 1212.5560935519334 2 607.2855834960938 MULTI HCD FTMS 0 0 0 11454 59661.80078125 0.3223259103973441 -5 0.13100814819335938 6 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 38.175570920033316 0.07371992880350783 1 Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 6 -1 61.375 0 0 5.0616 0 0 438.19368178535314 0 438.19368178535314 0 61.37517525248825 0 0 0 1.9247425010840047 0 0.4247425010840047 0 Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 5.0616 + + 73 NaN NaN 112747 NaN 8737 2721 11454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11462 53.773 NaN 553510 35 0 54490 0.327 + 18235 MPDVDLHL 8 78 478.23169742748837 954.4488419217768 2 478.2315368652344 MULTI HCD FTMS 0 0 0 11461 291450.78125 0.39480113021595475 -27 0.6438789367675781 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 101.72198241140316 0.04261147255216747 1 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 64.959 0 0 6.8059 6.8059 87.469 0 0 0 6.4928876664371415 6.4928876664371415 6.4928876664371415 6.4928876664371415 0 2.1549471895720984 0 0.3054621874040891 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[YN]{[TV]|[{I|L}S]}{[QD]|[EN]|[WG]|[KD]|[RS]}C{I|L} 6.8059;6.1256;4.0582;0.81481 +;+;-;- + 352 + NaN NaN 176217.1 NaN 8738 2722 11461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11463 53.778 NaN 494750 35 0 38321 0.261 + 7591 FYHKYFNYL 9 85 647.8164508336723 1293.6183487341445 2 647.8165893554688 MULTI HCD FTMS 0 0 0 11461 179186.34375 0.22611104087541423 12 -0.3413124084472656 2 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 70.33199760932243 0.0089807860198535 1 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L} 9 2 + 67.049 0 0 5.183 5.183 82.044 0 0 0 0.8407665280985555 11.237125054200234 0.8407665280985555 0.8407665280985555 0 1.1861818737241734 0 0.7302046884880937 0.7742275032520141 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYGG{M(Oxidation (M))|F}Y{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}YKW{[QD]|[EN]|[WG]|[KD]|[RS]};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}NYKW{[QD]|[EN]|[WG]|[KD]|[RS]} 5.183;5.1181;5.0766;5.0116;4.4712;4.4062;4.3648;4.3144;4.2998;4.2079 -;+;-;-;-;-;-;-;-;- + 683 NaN NaN 158522.1 NaN 8739 2722 11461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11464 53.781 NaN 516470 35 0 127070 0.263 -1 HFDMAVYL 8 67 506.2340287992694 1010.4535046653389 2 506.23388671875 MULTI HCD FTMS 0 0 0 11461 209389.390625 1 0 0 3 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 8.593279151180031 0.5292430274356741 1 VY{I|L} 3 -1 29.693 0 0 2.9386 0 0 617.2261830060562 0 617.2261830060562 0 15.088643834802156 0 0 0 0.5 0 0 0 VY{I|L} 2.9386 + + 39 NaN NaN 175156.2 NaN 8740 2722 11461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11465 53.785 NaN 579700 35 0 116570 0.261 -1 0 73 531.5022322932833 2652.4747791334166 5 531.7031860351562 MULTI HCD FTMS 0 0 0 11461 76757.375 0.6563179159312412 1 -0.022937774658203125 4 NaN NaN 1 N 1 -1 11.237 0 0 0.42365 0 0 98.05965751392053 2437.300062022932 2535.3597195368525 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.42365 - 49 + NaN NaN 168944.4 NaN 8741 2722 11461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11466 53.788 NaN 99897 35 0 6760 0.261 + -1 KMHFVFMWI 9 43 635.8074759429229 NaN 0 636.2517700195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _KM(Oxidation (M))HFVFM(Oxidation (M))WI_ REV__ENSG00000169860|ENST00000305097|P2RY1 2.0597508629832335 0.2852655770354268 1 P 1 -1 5.4846 0 0 0.43199 0 0 790.0434664348708 379.4850252740844 1169.5284917089552 0 0 0 0 0 0 0 0 0 P 0.43199 - 2 + NaN NaN 103056.5 NaN 8742 2722 11461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11467 53.791 NaN 131220 35 0 6129.4 0.262 + 2107 DFEKIKNW 8 66 540.2797881864748 1078.5450234397495 2 541.7852172851562 MULTI HCD FTMS 0 0 0 11461 32782.4296875 0.2181015143891922 26 -0.7038230895996094 6 Unmodified _DFEKIKNW_ ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 5.760428011301431 0.5334459684533844 1 TNW 3 6 21.682 0 0 2.0103 0 0 659.3670887247089 0 659.3670887247089 0 1.9897000433601875 0 0 0 0 0 0 0 TNW 2.0103 - 113 + NaN NaN 116208.1 NaN 8743 2722 11461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11469 53.796 NaN 317440 35 0 60760 0.327 + 24809 RYPLLLQKI 9 69 572.3659738446571 1142.7173947561141 2 572.3662719726562 MULTI HCD FTMS 0 0 0 11468 171866.921875 0.6471626409101088 -3 0.06539535522460938 1 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 34.40172386719151 0.0910440009062557 1 [YR][{I|L}P]{I|L}{I|L}QK{I|L} 9 0 + 48.918 0 0 4.2809 4.2809 85.11 0 0 0 5.162574822053543 31.836521141505756 5.162574822053543 9.208187539523749 0 1.305462187404089 0 0 0 + + [YR][{I|L}P]{I|L}{I|L}QK{I|L};[YR][{I|L}P]{I|L}{I|L}[AG]K{I|L};[RP][Y{I|L}]{I|L}{I|L}QK{I|L};[RP][Y{I|L}]{I|L}{I|L}[AG]K{I|L} 4.2809;3.4751;3.3375;2.5317 +;-;-;- + 126 NaN NaN 132561.6 NaN 8744 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11470 53.801 NaN 333460 35 0 48802 0.262 + 14142 LAEGLRTVL 9 59 486.2978533101461 970.5811536870922 2 486.2978820800781 MULTI HCD FTMS 0 0 0 11468 187863.3125 0.7071798156536203 -2 0.045833587646484375 2 Unmodified _LAEGLRTVL_ ENSG00000111331|ENST00000228928|OAS3 51.41523569358685 0.02959097413485123 1 [{I|L}A]EG[R{I|L}]TV{I|L} 9 0 + 66.678 0 0 6.8699 6.8699 87.725 0 0 0 8.867640270735464 38.499934467764874 8.867640270735464 6.817496819840656 0 1.6861818737241734 1.5228787452803376 0.3494850021680094 0 + + [{I|L}A]EG[R{I|L}]TV{I|L};[{I|L}A]EG[R{I|L}]S{I|L}{I|L};[{I|L}A]{[TV]|[{I|L}S]}A{[RE]|[WV]}V{I|L};{[CP]|[EA]}{I|L}G[R{I|L}]TV{I|L};[{I|L}A]{[TV]|[{I|L}S]}A[RD]{I|L}{I|L};[{I|L}A]{[TV]|[{I|L}S]}R{[DA]|[EG]}{I|L}{I|L};{[CP]|[EA]}{I|L}G[R{I|L}]S{I|L}{I|L};{[TV]|[{I|L}S]}[{I|L}A]A{[RE]|[WV]}V{I|L};{[TV]|[{I|L}S]}[{I|L}A]A[RD]{I|L}{I|L};{[TV]|[{I|L}S]}[{I|L}A]R{[DA]|[EG]}{I|L}{I|L} 6.8699;6.1675;4.4223;4.0615;3.7199;3.4098;3.3591;3.2645;2.5621;2.252 +;-;-;-;-;-;-;-;-;- + 190 NaN NaN 146785.4 NaN 8745 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11471 53.804 NaN 397630 35 0 85922 0.261 + 27813 TAYNLVHEL 9 71 530.277135328112 1058.5397177230238 2 530.2610473632812 MULTI HCD FTMS 0 0 0 11468 20280.60546875 0.05986847106194545 13 -0.38410186767578125 3 Unmodified _TAYNLVHEL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 18.373094154950223 0.20161688160436167 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TWV 5 8 31.681 0 0 2.9929 0 0 0 394.17450891666255 394.17450891666255 5.439455175668755 0 0 0 0 0.5994850021680094 1.5228787452803376 0 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TWV 2.9929 - 345 + NaN NaN 160899.1 NaN 8746 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11472 53.807 NaN 283050 35 0 20576 0.261 + 15185 LMVDHENFI 9 76 559.272017288907 1116.529481644614 2 559.26025390625 MULTI HCD FTMS 0 0 0 11468 49456.34375 0.20875478389976834 10 -0.2888450622558594 4 Unmodified _LMVDHENFI_ ENSG00000140284|ENST00000267842|SLC27A2;nc|ENSG00000140284|O14975-2|SLC27A2 23.1484247019978 0.1603590852062899 1 [YT]QD{I|L}Q 6 8 51.189 0 0 4.5847 0 0 0 365.14374719791255 365.14374719791255 12.723703006718594 0 0 0 0 0 2 0.7302046884880937 0.3252574989159953 [YT]QD{I|L}Q 4.5847 - 605 + NaN NaN 123975.4 NaN 8747 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11473 53.811 NaN 373550 35 0 49153 0.261 -1 WNCMQCLH 8 70 574.7252168816996 1147.435880830199 2 574.7249145507812 MULTI HCD FTMS 0 0 0 11468 99149.4140625 0.2754888375479751 10 -0.2888450622558594 5 2 Carbamidomethyl (C) _WNC(Carbamidomethyl (C))MQC(Carbamidomethyl (C))LH_ ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8 5.760428011301431 0.5334459684533844 1 VS{[DS]|[MA]|[CV]|TT} 4 -1 20.49 0 0 1.7857 0 0 741.2515679413303 0 741.2515679413303 0 7.783190067533994 0 0 0 0 0 0.7302046884880937 0 VS{[DS]|[MA]|[CV]|TT} 1.7857 - 83 + NaN NaN 144197.6 NaN 8748 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11474 53.814 NaN 461550 35 0 58242 0.261 + -1 PDLCWKVN 8 74 516.2506305133777 1030.4867080935553 2 516.2499389648438 MULTI HCD FTMS 0 0 0 11468 89107.1875 0.6445014360088617 -1 0.022937774658203125 6 Carbamidomethyl (C) _PDLC(Carbamidomethyl (C))WKVN_ REV__NTM|p.D80V|1|0.09|ENSG00000182667|chr11:132146353-132146353|A/T|missense_variant 11.640296217721598 0.50814828952472 1 [DP]{I|L} 3 -1 25.044 0 0 2.4303 0 0 0 702.3003463058261 702.3003463058261 5.134385308539855 0 0 0 0 0.5 0.958607314841775 0 0 [DP]{I|L} 2.4303 + + 157 NaN NaN 160350.1 NaN 8749 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11475 53.817 NaN 238440 35 0 29105 0.261 + 29812 VENAVHPVL 9 46 489.27332298855066 976.5320930439013 2 489.2742004394531 MULTI HCD FTMS 0 0 0 11468 58743.51171875 0.6079431287238608 -2 0.045833587646484375 7 Unmodified _VENAVHPVL_ REV__ENSG00000253797|ENST00000521776|UTP14C 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}PV{I|L} 4 -1 38.928 0 0 3.9863 0 0 502.24608046699376 0 502.24608046699376 0 33.83925646871916 0 0 0 1 0 0 0 {M(Oxidation (M))|F}PV{I|L} 3.9863 - 34 NaN NaN 107673.1 NaN 8750 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11476 53.821 NaN 446090 35 0 27309 0.261 + 29508 TYVSGTLRF 9 80 522.2797536028887 1042.5449542725773 2 522.27978515625 MULTI HCD FTMS 0 0 0 11468 59745.453125 0.10628250215610908 18 -0.5115394592285156 8 Unmodified _TYVSGTLRF_ CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 38.175570920033316 0.07371992880350783 1 [YT]VS 4 5 42.127 0 0 4.0407 0 0 0 589.3115328424436 589.3115328424436 13.186362358410122 0 0 0 0 1.1861818737241734 1.5228787452803376 0.5994850021680094 0 + [YT]VS 4.0407 + + 200 + NaN NaN 152925.8 NaN 8751 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11477 53.824 NaN 150380 35 0 25183 0.262 + 24555 RYLLKFEQI 9 56 403.9043406784896 1208.6911926356688 3 404.2383117675781 MULTI HCD FTMS 0 0 0 11468 26743.349609375 0.33256761744358426 5 -0.15443038940429688 9 Unmodified _RYLLKFEQI_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 12.872603262515298 0.2491399024913319 1 Q{I|L} 2 7 25.701 0 0 2.1264 0 0 949.5392955061349 0 949.5392955061349 0 10.21652514092061 0 0 0 0.4247425010840047 0 0 0.3494850021680094 + Q{I|L} 2.1264 + + 41 NaN NaN 110379.4 NaN 8752 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11478 53.827 NaN 184880 35 0 17876 0.261 + 3999 ERNLAEQSSM 10 61 582.7695637464891 1163.524574559778 2 582.769775390625 MULTI HCD FTMS 0 0 0 11468 43055.08203125 0.37886535711943425 14 -0.41028594970703125 10 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 4.897010918128616 0.4493830473644964 1 ST 2 -1 20.217 0 0 1.7375 0 0 236.0799971651315 736.3486891723046 972.4286863374361 0 0 0 0 0 0.9247425010840047 0 0 0 ST 1.7375 - 35 + NaN NaN 121070 NaN 8753 2723 11468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11480 53.832 NaN 1525900 35 0 294800 0.327 + 29370 TYQDIQNTI 9 82 548.2693775600465 1094.5242021868928 2 548.269775390625 MULTI HCD FTMS 0 0 0 11479 780498.1875 0.20464705576966416 11 -0.318359375 1 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 117.83759599426817 0.001662893820975323 1 [YT]QD{I|L}QNT{I|L} 9 0 + 103.99 0 0 9.5014 9.5014 93.435 0 0 0 14.242340564755267 16.478174818886373 14.242340564755267 9.208187539523749 0 2.055462187404089 2 1.4049471895720984 0.3807196863200844 + + [YT]QD{I|L}QNT{I|L};[YT]QD{I|L}QGGT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}NQT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L} 9.5014;8.6601;8.6601;8.6601;8.2001;7.9246;7.8228;7.8228;7.8228;7.3588 +;-;-;-;-;-;-;-;-;- + 1415 NaN NaN 318428.8 NaN 8754 2724 11479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11481 53.837 NaN 1229500 35 0 99395 0.261 + 28431 TPINEGQTVL 10 92 536.2878987978731 1070.5612446625462 2 536.2881469726562 MULTI HCD FTMS 0 0 0 11479 212998.4375 0.3070385776802038 5 -0.14114761352539062 2 Unmodified _TPINEGQTVL_ ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 30.7034409873982 0.22608124881558994 1 TV{I|L} 3 7 28.817 0 0 2.6918 0 0 739.3498518582651 0 739.3498518582651 0 3.868865538569466 0 0 0 0.7302046884880937 0 0.8494850021680094 0 + TV{I|L} 2.6918 + + 255 NaN NaN 294523.5 NaN 8755 2724 11479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11482 53.84 NaN 1502600 35 0 201220 0.261 + 874 AYAIIKEEL 9 88 525.2974074522662 1048.5802619713322 2 525.2974853515625 MULTI HCD FTMS 0 0 0 11479 603668.0625 0.1831865378840972 -4 0.101593017578125 3 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 110.6747026088012 0.0028322563155251486 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 9 0 + 89.509 0 0 8.5362 8.5362 90.654 0 0 0 18.898226411777998 47.33140775808947 18.898226411777998 7.134928107446186 0 2.138210492164445 2 0.3054621874040891 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}VASE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}V{[SA]|[TG]}E{I|L};AYA{I|L}{I|L}{I|L}[DG]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AV{[SA]|[TG]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AKEE{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}AS{M(Oxidation (M))|F}{I|L};EE{I|L}K{I|L}AS{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}A{I|L}AY 8.5362;7.8557;7.1493;6.3211;5.9887;5.8048;5.6793;3.2205;3.0527;2.9334 +;-;-;-;-;-;-;-;-;- + 1286 NaN NaN 312940.4 NaN 8756 2724 11479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11483 53.844 NaN 514560 35 0 33595 0.261 + 21377 PVATSVKEVI 10 80 521.8107005564945 1041.6068481797888 2 521.8107299804688 MULTI HCD FTMS 0 0 0 11479 134006.234375 0.79598911060337 -1 0.036197662353515625 4 Unmodified _PVATSVKEVI_ ENSG00000091428|ENST00000397081|RAPGEF4;nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 34.40172386719151 0.19398797222092762 1 EV{I|L} 3 7 38.188 0 0 3.6662 0 0 682.4002423027699 0 682.4002423027699 0 23.26606256887672 0 0 0 0.9247425010840047 0 0.9247425010840047 0 + EV{I|L} 3.6662 + + 97 NaN NaN 164040.3 NaN 8757 2724 11479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11484 53.847 NaN 334060 35 0 42333 0.261 + 15492 LPDMVVSHL 9 79 513.7679631974995 1025.521373461799 2 513.7682495117188 MULTI HCD FTMS 0 0 0 11479 105055.015625 0.06495957726968547 46 -1.102447509765625 5 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 74.92900055777586 0.007493270374442853 1 {I|L}PDV{M(Oxidation (M))|F}VSH{I|L} 9 2 + 85.096 0 0 8.2979 8.2979 89.732 0 0 0 71.1168370740407 10.642492736872612 10.642492736872612 5.848396689760094 0 2.1005762035186217 1.5228787452803376 0.4247425010840047 0 {I|L}PDV{M(Oxidation (M))|F}VSH{I|L};{I|L}PD{M(Oxidation (M))|F}VVSH{I|L};{I|L}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ES]|[DT]|[{I|L}C]}SH{I|L};{I|L}PDV[VS]{M(Oxidation (M))|F}H{I|L} 8.2979;7.7276;5.3639;5.2276 -;+;-;- + 431 + NaN NaN 136930.6 NaN 8758 2724 11479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11486 53.852 NaN 532460 35 0 58595 0.327 + 27154 SYNEHWNYL 9 66 613.2669517182799 1224.5193505033596 2 613.2671508789062 MULTI HCD FTMS 0 0 0 11485 249709.1875 0.6939341441612858 2 -0.062442779541015625 1 Unmodified _SYNEHWNYL_ ENSG00000111321|ENST00000228918|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR 45.69961567697781 0.039180348357221985 1 [YN]HDTWNY{I|L} 9 4 + 52.981 0 0 4.3267 4.3267 85.183 0 0 0 2.9833247972062793 18.161064762674144 2.9833247972062793 9.208187539523749 0 0.4247425010840047 0 0.3054621874040891 0.805462187404089 [YN]HDTWNY{I|L};[YN]HDTWGGY{I|L};[YN]HD[WQ]SY{I|L} 4.3267;3.5747;2.8975 -;-;- 536 NaN NaN 169826.9 NaN 8759 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11487 53.856 NaN 603430 35 0 144390 0.262 + 26289 SRKRWAHG 8 57 499.2753883992397 NaN 0 499.25885009765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SRKRWAHG_ REV__ENSG00000106070|ENST00000401949|GRB10;REV__nc|ENSG00000106070|Q13322-2|GRB10;REV__nc|ENSG00000106070|Q13322-3|GRB10;REV__nc|ENSG00000106070|Q13322-4|GRB10 5.760428011301431 0.38822285293237185 1 EWTQ 4 -1 18.532 0 0 1.8596 0 0 131.1281803809955 318.1574801080688 449.2856604890643 0 0 0 0 0 0 0 0 0.5 EWTQ 1.8596 - 83 + NaN NaN 166890.1 NaN 8760 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11488 53.86 NaN 310350 35 0 98928 0.261 + 30773 VPPPTTALID 10 56 512.289561448583 NaN 0 512.2791748046875 PEAK HCD FTMS 0 0 0 11485 7801.6103515625 0.7024557134144583 1 -0.032909393310546875 3 Unmodified _VPPPTTALID_ REV__ENSG00000130479|ENST00000324096|MAP1S;REV__MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;REV__nc|ENSG00000130479|Q66K74-2|MAP1S 10.823927491677226 0.33092050725491123 1 PYE 3 -1 19.693 0 0 1.9258 0 0 99.08988778841236 531.2930391900999 630.3829269785123 0 0 0 0 0 0 0 0.3494850021680094 0 PYE 1.9258 - 17 + NaN NaN 127025.6 NaN 8761 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11489 53.863 NaN 359580 35 0 91565 0.261 -1 FPDRIMNTF 9 71 578.7763288981632 1155.5381048631264 2 578.7767333984375 MULTI HCD FTMS 0 0 0 11485 114407.8515625 0.15497422409627926 19 -0.5375442504882812 4 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 32.037481411007896 0.10189719824197178 1 {I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 5 -1 38.708 0 0 3.3497 0 0 515.2501698224625 0 515.2501698224625 0 20.748759908329184 0 0 0 0.7742275032520141 0 0 0.3252574989159953 {I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.3497 + + 170 NaN NaN 134518.8 NaN 8762 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11490 53.867 NaN 238370 35 0 33590 0.261 -1 0 65 618.1082798826568 3085.505017080284 5 618.3250122070312 MULTI HCD FTMS 0 0 0 11485 14860.4794921875 0.313720917824423 5 -0.15108871459960938 5 NaN NaN 1 AE 2 -1 13.711 0 0 0.44438 0 0 1981.9649806563061 900.4359835260374 2882.4009641823436 0 0 0 0 0 0 0 0.4247425010840047 0 AE 0.44438 - 93 + NaN NaN 131661 NaN 8763 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11491 53.87 NaN 588160 35 0 63548 0.264 + 18775 NADAIVVKL 9 78 471.7845208438265 941.554488754453 2 471.7845458984375 MULTI HCD FTMS 0 0 0 11485 181294.125 0.15911322440057987 -5 0.12117385864257812 6 Unmodified _NADAIVVKL_ ENSG00000197157|ENST00000354725|SND1 107.5634045930896 0.0033401844687379516 1 {[QG]|[NA]}DA{I|L}VVK{I|L} 9 0 + 110.8 0 0 11.768 11.768 97.587 0 0 0 21.936726795685345 16.478174818886373 16.478174818886373 21.936726795685345 0 2.6549471895720984 1.6989700043360187 0.5629529932484498 1.4802046884880937 + + {[QG]|[NA]}DA{I|L}VVK{I|L};NADA{I|L}VVK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[EP][QT]K{I|L} 11.768;9.4383;1.8086 +;+;- + 154 NaN NaN 169235.3 NaN 8764 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11492 53.873 NaN 123270 35 0 21778 0.261 + 11425 IYPVKYTQTF 10 40 630.3373752244877 1258.6601975157753 2 630.33740234375 MULTI HCD FTMS 0 0 0 11485 47637.29296875 0.13762473650174348 9 -0.26259613037109375 7 Unmodified _IYPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 8.155526934196011 0.43213520406898465 1 R 1 10 6.9897 0 0 0.55533 0 0 776.4093868241722 323.1247957818969 1099.5341826060692 0 0 0 0 0 0 0 0 0 R 0.55533 - 8 + NaN NaN 105771.1 NaN 8765 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11493 53.877 NaN 213230 35 0 21583 0.261 -1 RYPTTFVMV 9 82 565.2890132120592 1128.5634734909183 2 565.289306640625 MULTI HCD FTMS 0 0 0 11485 41293.453125 0.5854930579094637 1 -0.032909393310546875 8 Oxidation (M) _RYPTTFVM(Oxidation (M))V_ ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F}V 3 -1 35.445 0 0 3.1407 0 0 765.3815785138687 0 765.3815785138687 0 21.63303128443836 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F}V 3.1407 + + 96 NaN NaN 119813.9 NaN 8766 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11494 53.88 NaN 91297 35 0 12920 0.261 + 8668 HFIAEHYMF 9 43 597.7735190758525 1193.532485218505 2 597.7737426757812 MULTI HCD FTMS 0 0 0 11485 24349 0.4611744094511491 7 -0.20354461669921875 9 Unmodified _HFIAEHYMF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 14.838274106304384 0.23215694253501695 1 TYM{M(Oxidation (M))|F} 4 6 28.443 0 0 2.3831 0 0 633.2931385724625 0 633.2931385724625 0 2.4742501084004687 0 0 0 0 0 0 0 TYM{M(Oxidation (M))|F} 2.3831 - 17 NaN NaN 100776.8 NaN 8767 2725 11485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11496 53.885 NaN 2350200 35 0 369020 0.327 + 17942 MITDLEERL 9 116 568.2866526770156 1134.558752420831 2 568.2869873046875 MULTI HCD FTMS 0 0 0 11495 1215522.75 0.8926427201042805 -3 0.08868789672851562 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 148.26817274609934 1.0657023776783114E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 116.88 0 0 10.302 10.302 95.989 0 0 0 24.22302541761715 13.551434250963936 13.551434250963936 13.551434250963936 0 2.9247425010840047 2 2.079689690656103 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TDEE{I|L}R{I|L};[VP]T[QT]QTT{M(Oxidation (M))|F}{I|L};[VP]T[QT][AG]TT{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[KQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T{I|L}E;{[RE]|[WV]}E{I|L}{I|L}DT{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[VS][DV]T{I|L}{M(Oxidation (M))|F}{I|L};{[RE]|[WV]}{I|L}{[QN]|[E{I|L}]|[KN]}DT{M(Oxidation (M))|F}{I|L} 10.302;9.1071;8.1665;4.8158;3.6906;2.8828;1.7926;0.99124;0.72408;0.68082 +;-;+;-;-;-;-;-;-;- + 5230 NaN NaN 446602.8 NaN 8768 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11497 53.889 NaN 468610 35 0 122790 0.261 + 1513 AYVGNLPRI 9 67 501.79017233795776 1001.5657917427155 2 501.790283203125 MULTI HCD FTMS 0 0 0 11495 218744.84375 0.2808182192736506 9 -0.265869140625 2 Unmodified _AYVGNLPRI_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 42.09456458481378 0.05572955244001856 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}PA{I|L} 9 3 + 78.757 0 0 7.8634 7.8634 87.698 0 0 0 16.355830254716253 70.7986626650986 16.355830254716253 3.0102999566398125 0 2.1989700043360187 1.2218487496163564 0 0.6747425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VAGQ{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQ[AG]{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VAG[AG]{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQ[VG][RP]{I|L};[Q{I|L}][R{M(Oxidation (M))|F}]{[SA]|[TG]}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VAG[VG][RP]{I|L};[Q{I|L}]YG[VG][RP]{I|L} 7.8634;7.5629;6.9441;5.9742;3.3263;2.8305;2.6768;1.1065 -;-;-;-;-;-;-;- 259 NaN NaN 160468.2 NaN 8769 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11498 53.893 NaN 418160 35 0 27694 0.261 + 20130 NYIRITSEI 9 85 554.80326574615 1107.5919785591 2 554.8037109375 MULTI HCD FTMS 0 0 0 11495 80622.8125 0.3167345986691875 4 -0.1181793212890625 3 Unmodified _NYIRITSEI_ ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 67.83816525789305 0.009787749748478139 1 [YN]{I|L}[R{I|L}]TSE{I|L} 9 0 + 70.741 0 0 6.3869 6.3869 93.512 0 0 0 9.868507712272546 9.868507712272546 9.868507712272546 52.531286633547865 0 2.004432191740108 2 0 0.2614393726401688 + + [YN]{I|L}[R{I|L}]TSE{I|L};[VP]{[QV]|[N{I|L}]|[RA]|[KV]}[HV]TSE{I|L};[VP]{[QV]|[N{I|L}]|[RA]|[KV]}TVHSE{I|L} 6.3869;1.6441;0.95816 +;-;- + 476 NaN NaN 157625.8 NaN 8770 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11499 53.896 NaN 675800 35 0 100450 0.261 + 8344 GYIERPQLI 9 78 544.8085079548114 1087.6024629764227 2 544.8091430664062 MULTI HCD FTMS 0 0 0 11495 218716.421875 0.3150605923022122 -4 0.11162567138671875 4 Unmodified _GYIERPQLI_ ENSG00000164329|ENST00000453514|TENT2;nc|ENSG00000164329|Q6PIY7-2|TENT2 66.45667989310934 0.010234776021261575 1 [YG]{I|L}ER[QP]{I|L}{I|L} 9 0 + 79.403 0 0 7.3007 7.3007 89.432 0 0 0 25.642492736872597 62.74735947860492 25.642492736872597 9.06295947543775 0 2.3494850021680094 2 0 0.3054621874040891 + + [YG]{I|L}ER[QP]{I|L}{I|L};[YG]{I|L}ER{I|L}[QP]{I|L};[YG]E{I|L}R[QP]{I|L}{I|L};[YG]E{I|L}R{I|L}[QP]{I|L};{[QN]|[E{I|L}]|[KN]}[YG]R[QP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]R{I|L}[QP]{I|L};{[QN]|[E{I|L}]|[KN]}R[YG][QP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}R[YG]{I|L}[QP]{I|L};{[QN]|[E{I|L}]|[KN]}RQ[{I|L}P]{I|L}YG;{[QN]|[E{I|L}]|[KN]}RQ[{I|L}P][YG]{I|L} 7.3007;6.4674;6.1255;5.2922;2.8183;1.985;1.8742;1.0409;0.75942;0.30442 +;-;-;-;-;-;-;-;-;- + 602 NaN NaN 194629.5 NaN 8771 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11500 53.899 NaN 218320 35 0 15450 0.261 -1 YPESESIMM 9 60 551.7250613620629 1101.4355697909257 2 551.7251586914062 MULTI HCD FTMS 0 0 0 11495 44407.95703125 0.6092319856362253 5 -0.14770889282226562 5 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F}M 2 -1 25.969 0 0 2.3578 0 0 805.3507216440277 0 805.3507216440277 0 10.484550065040281 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}M 2.3578 + + 26 NaN NaN 119673.6 NaN 8772 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11501 53.903 NaN 283450 35 0 28625 0.261 -1 YHMKHCCP 8 65 574.7252168816996 1147.435880830199 2 574.725830078125 MULTI HCD FTMS 0 0 0 11495 38257.80859375 0.10630016643347341 13 -0.36407470703125 6 2 Carbamidomethyl (C),Oxidation (M) _YHM(Oxidation (M))KHC(Carbamidomethyl (C))C(Carbamidomethyl (C))P_ ENSG00000056277|ENST00000370978|ZNF280C 2.8892196856762586 0.5377058178582064 1 VS{[DS]|[MA]|[CV]|TT} 4 -1 20.49 0 0 1.7857 0 0 741.2522393280491 0 741.2522393280491 0 8.807196863200842 0 0 0 0 0 0.7302046884880937 0 VS{[DS]|[MA]|[CV]|TT} 1.7857 - 41 + NaN NaN 138124.2 NaN 8773 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11502 53.906 NaN 101570 35 0 22871 0.262 + -1 MFSEGPVM 8 40 465.19242824668817 928.3703035601764 2 465.1914367675781 MULTI HCD FTMS 0 0 0 11495 44165.140625 0.8544311177637455 1 -0.02953338623046875 7 2 Oxidation (M) _M(Oxidation (M))FSEGPVM(Oxidation (M))_ REV__ENSG00000183090|ENST00000329798|FREM3 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5731 0 0 763.2914289037295 0 763.2914289037295 0 7.156818820794937 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5731 + + 11 + NaN NaN 94325.3 NaN 8774 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11503 53.909 NaN 592930 35 0 126470 0.261 + 26894 SYITEECLKKL 11 76 442.9037986667762 1325.6895666005287 3 442.9045104980469 MULTI HCD FTMS 0 0 0 11495 75909.546875 0.5288607964506686 -2 0.052490234375 8 Unmodified _SYITEECLKKL_ ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C;UBE3C-PTPRN2|1|fusion 11.065280125700339 0.3606702632373656 1 SY{I|L} 3 8 52.435 0 0 3.9553 0 0 0 959.4876516240818 959.4876516240818 37.48651242028323 0 0 0 0 0.9247425010840047 2 0 0 + SY{I|L} 3.9553 + + 24 + NaN NaN 170690.4 NaN 8775 2726 11495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11505 53.914 NaN 1474900 35 0 442580 0.327 + 7600 FYHKYFNYL 9 78 432.2132815060607 1293.6180151183821 3 432.2130126953125 MULTI HCD FTMS 0 0 0 11504 564703.8125 0.14582771128735536 18 -0.5012245178222656 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 36.12702656103203 0.08312389501731911 1 Y{I|L} 2 7 29.776 0 0 2.3018 0 0 999.4633227943117 0 999.4633227943117 0 16.281446971601312 0 0 0 0.8807196863200843 0 0 0 + Y{I|L} 2.3018 + + 36 NaN NaN 321644.6 NaN 8776 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11506 53.919 NaN 729150 35 0 116080 0.261 + 16718 LYANMFERL 9 92 586.7918096295268 1171.5690663258536 2 586.792236328125 MULTI HCD FTMS 0 0 0 11504 368758.71875 0.966854947656694 -2 0.062442779541015625 2 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 136.39213081522345 0.00021731600835925866 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 114.34 0 0 9.7599 9.7599 93.62 0 0 0 92.57425825257229 9.009461452434238 9.009461452434238 9.208187539523749 0 2.805462187404089 2 1.0451140161145327 0.5994850021680094 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L} 9.7599;8.9739;8.4301;7.814;6.7057;6.4305;6.0895;5.889;5.6446;5.2728 +;-;+;-;-;-;-;-;-;- + 2979 + NaN NaN 213526.8 NaN 8777 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11507 53.922 NaN 949210 35 0 76453 0.262 + 18236 MPDVDLHL 8 90 478.23169742748837 954.4488419217768 2 478.23138427734375 MULTI HCD FTMS 0 0 0 11504 490799.84375 0.6648406711804413 -22 0.5661849975585938 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 70.588 0 0 7.3957 7.3957 88.779 0 0 0 4.894958096377408 61.12449708633612 4.894958096377408 6.99613478782161 0 2.305462187404089 0 1.7971062485323515 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE 7.3957;6.6627;3.9151 +;+;- + 341 NaN NaN 246422.6 NaN 8778 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11508 53.926 NaN 1167800 35 0 400470 0.261 + 26854 SYIMICNVLEE 11 72 438.54202759713576 1312.6042533916072 3 438.5423889160156 MULTI HCD FTMS 0 0 0 11504 388733.8125 1 0 0 4 Unmodified _SYIMICNVLEE_ tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 14.837902256254086 0.32779928292324945 1 SY{I|L} 3 8 54.693 0 0 4.1667 0 0 0 946.4021750957769 946.4021750957769 22.19740659048788 0 0 0 0 0.8494850021680094 2 0 0 + SY{I|L} 4.1667 + + 224 + NaN NaN 255105.8 NaN 8779 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11509 53.929 NaN 1006700 35 0 85175 0.261 + 9075 HPFFGRVVL 9 88 536.3081780324356 1070.6018031316712 2 536.30859375 MULTI HCD FTMS 0 0 0 11504 236669.015625 0.8180014665555031 1 -0.0362091064453125 5 Unmodified _HPFFGRVVL_ ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 20.453626601364224 0.18364154288633264 1 HP{M(Oxidation (M))|F}{I|L} 4 5 33.175 0 0 3.0988 0 0 0 573.3143404596311 573.3143404596311 12.006506310624161 0 0 0 0 0.4247425010840047 0 0 0 HP{M(Oxidation (M))|F}{I|L} 3.0988 - 605 + NaN NaN 236096.2 NaN 8780 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11510 53.932 NaN 788000 35 0 110600 0.261 + 35446 YYEKQFPEI 9 83 608.7979284011249 1215.5813038690496 2 608.7985229492188 MULTI HCD FTMS 0 0 0 11504 316363.96875 0.7379942360961164 -2 0.062442779541015625 6 Unmodified _YYEKQFPEI_ ENSG00000141027|ENST00000268712|NCOR1;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2 97.74103586103693 0.004323122048066454 1 YYEKQ{M(Oxidation (M))|F}PE{I|L} 9 0 + 102.3 0 0 8.416 8.416 92.136 0 0 0 6.429993723234517 6.429993723234517 6.429993723234517 9.208187539523749 0 2.5356668758921828 2 0.3054621874040891 0.7059771852360797 + + YYEKQ{M(Oxidation (M))|F}PE{I|L};YYEK[AG]{M(Oxidation (M))|F}PE{I|L};YYEKQ{M(Oxidation (M))|F}{I|L}[EP];YYEK[AG]{M(Oxidation (M))|F}{I|L}[EP];YYEKQE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};YY[Q{I|L}][SG]{M(Oxidation (M))|F}PE{I|L};[Y{I|L}]QG{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}PE{I|L};[Y{I|L}]QY[SG]{M(Oxidation (M))|F}PE{I|L};YYEK[AG]E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[EP][DN]K[KP]{M(Oxidation (M))|F}E{I|L} 8.416;7.6585;7.3285;6.5709;5.2901;4.9628;4.8306;4.638;4.5326;4.1937 +;-;-;-;-;-;-;-;-;- + 1799 NaN NaN 204877.5 NaN 8781 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11511 53.936 NaN 486080 35 0 78673 0.261 + 4335 EVVIYVVER 9 73 553.3160414789398 1104.6175300246796 2 553.316162109375 MULTI HCD FTMS 0 0 0 11504 116893.078125 0.4518306457594038 -3 0.08202362060546875 7 Unmodified _EVVIYVVER_ ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54 125.0377797344192 0.0009059125702818869 1 {NN|[MP]|[D{I|L}]|[EV]}V{I|L}YVVER 9 0 + 103.47 0 0 9.3675 9.3675 97.643 0 0 0 5.374015516889372 5.374015516889372 5.374015516889372 36.95046257204389 0 3.274227503252014 1.5228787452803376 2.5994850021680094 0 + + {NN|[MP]|[D{I|L}]|[EV]}V{I|L}YVVER;{NN|[MP]|[D{I|L}]|[EV]}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}R 9.3675;6.0224 +;- + 300 NaN NaN 155358 NaN 8782 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11512 53.939 NaN 102860 35 0 13233 0.262 + 31096 VTGPELSTV 9 45 451.74477080105567 901.4749886689114 2 451.7447204589844 MULTI HCD FTMS 0 0 0 11504 58203.08203125 0.8302912886888164 1 -0.0362091064453125 8 Unmodified _VTGPELSTV_ REV__ENST00000395560.7_1_7:48134363-48147951:+|nuORF 14.838274106304384 0.23215694253501695 1 TV 2 -1 29.776 0 0 3.3031 0 0 683.3486539250673 0 683.3486539250673 0 29.776296993281406 0 0 0 0.5 0 0.3807196863200844 0 TV 3.3031 + + 19 NaN NaN 99463 NaN 8783 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11513 53.942 NaN 187080 35 0 16333 0.261 + 15899 LPLPFLAVFL 10 60 565.3529187300663 1128.6912845269326 2 565.3527221679688 MULTI HCD FTMS 0 0 0 11504 43313.125 0.9618449390927074 1 -0.0362091064453125 9 Unmodified _LPLPFLAVFL_ REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|298|2|anti-sense 12.531546534597751 0.39389615866941496 1 {I|L}P{I|L}{M(Oxidation (M))|F} 4 -1 21.402 0 0 1.8962 0 0 640.3927479474625 0 640.3927479474625 0 12.818656555439532 0 0 0 0 0 0 0 {I|L}P{I|L}{M(Oxidation (M))|F} 1.8962 - 39 NaN NaN 113892.8 NaN 8784 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11514 53.946 NaN 260600 35 0 26176 0.261 + 33429 YGSRLDYFQ 9 63 574.771658418407 1147.528763903614 2 574.77197265625 MULTI HCD FTMS 0 0 0 11504 56614.015625 0.05943107456025102 88 -2.2653465270996094 10 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 10.073929032068715 0.27331982688540024 1 SVS{[DS]|[MA]|[CV]|TT} 5 7 33.857 0 0 2.9504 0 0 654.3129873916984 0 654.3129873916984 0 28.37205316164642 0 0 0 1.4247425010840047 0 0.7302046884880937 0 SVS{[DS]|[MA]|[CV]|TT} 2.9504 - 33 + NaN NaN 143228.6 NaN 8785 2727 11504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11516 53.951 NaN 282130 35 0 38676 0.327 + 14143 LAEGLRTVL 9 62 486.2978533101461 970.5811536870922 2 486.2979431152344 MULTI HCD FTMS 0 0 0 11515 158882.71875 0.5980872489734844 3 -0.08196640014648438 1 Unmodified _LAEGLRTVL_ ENSG00000111331|ENST00000228928|OAS3 45.739877483867886 0.03899552410870734 1 {I|L}AEG 4 5 57.607 0 0 5.9353 0 0 0 597.3744919662307 597.3744919662307 34.65804408862894 0 0 0 0 1 1.6989700043360187 0.805462187404089 0 + {I|L}AEG 5.9353 + + 41 + NaN NaN 123674.3 NaN 8786 2728 11515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11517 53.955 NaN 308870 35 0 64367 0.261 + 24810 RYPLLLQKI 9 67 572.3659738446571 1142.7173947561141 2 572.3660278320312 MULTI HCD FTMS 0 0 0 11515 221834.828125 0.8353161367469512 2 -0.05243682861328125 2 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 60.07390631473393 0.0174780869009295 1 [YR][{I|L}P]{I|L}{I|L}QK{I|L} 9 0 + 72.202 0 0 6.3184 6.3184 87.099 0 0 0 7.909393809954892 7.909393809954892 7.909393809954892 7.909393809954892 0 2.110924374808178 1.2218487496163564 0 0 + + [YR][{I|L}P]{I|L}{I|L}QK{I|L};RY[{I|L}P]{I|L}{I|L}QK{I|L};[YR][{I|L}P]{I|L}{I|L}[AG]K{I|L};RY[{I|L}P]{I|L}{I|L}[AG]K{I|L} 6.3184;5.6263;5.5126;4.8204 +;+;-;- + 124 NaN NaN 131677.8 NaN 8787 2728 11515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11518 53.959 NaN 513740 35 0 68593 0.261 + 5102 FEHLCSYL 8 80 506.2340287992694 1010.4535046653389 2 506.23382568359375 MULTI HCD FTMS 0 0 0 11515 124276.0390625 0.5935164083125332 6 -0.16394424438476562 3 Unmodified _FEHLCSYL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 8.593279151180031 0.5292430274356741 1 Y{I|L} 2 6 25.969 0 0 2.57 0 0 716.2950762889626 0 716.2950762889626 0 10.395906230238126 0 0 0 0.5 0 0 0 + Y{I|L} 2.57 + + 44 NaN NaN 165391.4 NaN 8788 2728 11515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11519 53.962 NaN 437930 35 0 26127 0.261 -1 LLMHLEEM 8 83 516.2506305133777 1030.4867080935553 2 516.7540283203125 MULTI HCD FTMS 0 0 0 11515 71983.796875 0.6003928584344503 2 -0.05243682861328125 4 Oxidation (M) _LLMHLEEM(Oxidation (M))_ ARHGEF1|p.A538Rfs*14|1|0.43|ENSG00000076928|chr19:41902644-41902653|TGTGCCTTCG/-|frameshift_variant;ENSG00000076928|ENST00000354532|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 14.581692164780916 0.48650662947107914 1 E{M(Oxidation (M))|F} 2 -1 16.058 0 0 1.5583 0 0 736.3977626363272 0 736.3977626363272 0 0.9196937665947011 0 0 0 0 0 0.3494850021680094 0 E{M(Oxidation (M))|F} 1.5583 + + 156 + NaN NaN 148843.7 NaN 8789 2728 11515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11520 53.965 NaN 307360 35 0 22321 0.261 + 7592 FYHKYFNYL 9 60 647.8164508336723 1293.6183487341445 2 647.8159790039062 MULTI HCD FTMS 0 0 0 11515 123524.5078125 0.15587267673744032 18 -0.4944267272949219 5 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 55.50274090549119 0.023872834264864425 1 [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L} 9 0 + 68.114 0 0 5.2654 5.2654 85.046 0 0 0 4.762036441594191 60.32760017977509 4.762036441594191 7.2184874961635614 0 1.9247425010840047 0 0 0.805462187404089 + + [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKYY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};[Y{M(Oxidation (M))|F}][WK]N{M(Oxidation (M))|F}NY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};[Y{M(Oxidation (M))|F}][WK]N{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}][WK]GG{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}][WK]NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 5.2654;4.7074;4.5536;3.9956;3.6587;3.2756;3.1007;2.5638;2.5638;1.6689 +;-;-;-;-;-;-;-;-;- + 186 NaN NaN 137878.4 NaN 8790 2728 11515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11521 53.969 NaN 118860 35 0 18537 0.261 + 17184 LYMKPRMKI 9 44 590.341641382186 1178.668729831172 2 590.3418579101562 MULTI HCD FTMS 0 0 0 11515 71632.3515625 1 0 0 6 Unmodified _LYMKPRMKI_ ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4 6.723162845929126 0.3000504726104499 1 D{I|L} 2 8 19.464 0 0 1.6514 0 0 259.1888730203104 688.3459338674394 947.5348068877497 0 0 0 0 0 0.8494850021680094 0 0 0 D{I|L} 1.6514 - 15 + NaN NaN 119693.7 NaN 8791 2728 11515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11523 53.973 NaN 4966800 35 0 679110 0.327 + 875 AYAIIKEEL 9 100 525.2974074522662 1048.5802619713322 2 525.2977905273438 MULTI HCD FTMS 0 0 0 11522 3271642 0.9927985401351319 1 -0.029521942138671875 1 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 149.91393105778798 8.917243180786556E-06 1 AYA{I|L}{I|L}KE 7 2 103.71 0 0 9.8907 0 0 0 257.11427336376863 257.11427336376863 52.0075715766564 0 0 0 0 2.610924374808178 2 2.180884548956689 0 + AYA{I|L}{I|L}KE 9.8907 + + 2832 + NaN NaN 801914.8 NaN 8792 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11524 53.978 NaN 1521700 35 0 234450 0.261 + 657 APLEDEATL 9 100 479.73987853886996 957.4652041445399 2 479.7400207519531 MULTI HCD FTMS 0 0 0 11522 902979.875 0.2103309688624032 -4 0.1215667724609375 2 Unmodified _APLEDEATL_ ENSG00000149806|ENST00000529639|FAU 139.54400939418784 2.61670173137287E-05 1 [PA]{I|L}DEEAT{I|L} 9 2 + 85.786 0 0 8.9597 8.9597 93.856 0 0 0 9.815986760461257 16.478174818886373 9.815986760461257 9.815986760461257 0 1.586696871556164 1.6989700043360187 1.0356668758921828 0 [PA]{I|L}DEEAT{I|L};{[QN]|[E{I|L}]|[KN]}PGEEAT{I|L};[{I|L}P]ADEEAT{I|L};{[QN]|[E{I|L}]|[KN]}PDAEAT{I|L};[{I|L}P]EGEEAT{I|L};[{I|L}P]EDAEAT{I|L};{[QN]|[E{I|L}]|[KN]}PDEAAT{I|L};[{I|L}T]AEDE{I|L}PA;[PA]{I|L}DEE[{I|L}T]A;[{I|L}P]EDEAAT{I|L} 8.9597;7.9345;7.7627;7.7506;7.2358;7.0519;6.4677;6.4618;6.0489;5.769 -;-;-;-;-;-;-;-;-;- 1428 NaN NaN 313495.5 NaN 8793 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11525 53.982 NaN 713670 35 0 144730 0.261 + 29371 TYQDIQNTI 9 67 548.2693775600465 1094.5242021868928 2 548.269775390625 MULTI HCD FTMS 0 0 0 11522 337381.90625 0.08846172212798298 16 -0.44210052490234375 3 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 101.5434397834973 0.004223484458765915 1 [YT]QD{I|L}QNT{I|L} 9 0 + 99.536 0 0 9.094 9.094 93.08 0 0 0 4.402281476392034 4.402281476392034 4.402281476392034 9.208187539523749 0 2.416386562212267 2 0.7742275032520141 0.3807196863200844 + + [YT]QD{I|L}QNT{I|L};[YT]QD{I|L}QGGT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}[AG]NT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};{[QS]|[NT]}[YE]{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQGGT{I|L} 9.094;8.2527;8.2527;8.2527;7.7522;7.4154;7.4154;7.4154;6.9148;6.9109 +;-;-;-;-;-;-;-;-;- + 1057 NaN NaN 183726.1 NaN 8794 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11526 53.985 NaN 727580 35 0 74916 0.261 + 34294 YPDSHLPTL 9 95 521.7637531121 1041.5129532909998 2 521.763916015625 MULTI HCD FTMS 0 0 0 11522 186746.234375 0.3067617431646089 -9 0.24274063110351562 4 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 128.3654064809346 0.00070410514679239 1 YPD[HS]{I|L}PT{I|L} 9 0 + 74.063 0 0 7.1111 7.1111 88.732 0 0 0 8.09508461319119 8.09508461319119 8.09508461319119 8.09508461319119 0 2.392159058960253 1.2218487496163564 1.2059771852360797 0 + + YPD[HS]{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};Y[{I|L}A][YR]DE{I|L} 7.1111;6.3339;1.1647 +;+;- + 530 + NaN NaN 208321.7 NaN 8795 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11527 53.988 NaN 509510 35 0 114610 0.261 + 654 APLCLWYD 8 69 490.73106044994057 979.4475679666812 2 490.7312316894531 MULTI HCD FTMS 0 0 0 11522 171081.125 0.1907069301289511 -4 0.1215667724609375 5 Unmodified _APLCLWYD_ REV__nc|ENSG00000198431|Q16881-6|TXNRD1 42.96799951952854 0.1928021754174411 1 AP{I|L}E 4 -1 70.266 0 0 7.174 0 0 0 566.2084305305779 566.2084305305779 29.29454084045966 0 0 0 0 1.305462187404089 1.5228787452803376 1.1549471895720984 0 AP{I|L}E 7.174 - 202 + NaN NaN 166887.1 NaN 8796 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11528 53.991 NaN 291350 35 0 47484 0.261 -1 RFDEAYIYM 9 58 612.2741005920941 1222.533648250988 2 612.2750244140625 MULTI HCD FTMS 0 0 0 11522 139911.40625 1 0 0 6 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 20.41453444215458 0.18397929046831515 1 AY{I|L}Y{M(Oxidation (M))|F} 5 -1 48.733 0 0 3.9863 0 0 547.2362538068375 0 547.2362538068375 0 29.78088504608262 0 0 0 1.5 0 0 0 AY{I|L}Y{M(Oxidation (M))|F} 3.9863 + + 116 NaN NaN 124312.4 NaN 8797 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11529 53.995 NaN 183330 35 0 49300 0.261 + -1 VIVMGEEEMM 10 50 600.2526582323411 1198.4907635314821 2 600.2529907226562 MULTI HCD FTMS 0 0 0 11522 92627.9140625 0.6063625457301933 -3 0.08865737915039062 7 2 Oxidation (M) _VIVM(Oxidation (M))GEEEMM(Oxidation (M))_ REV__ENSG00000176783|ENST00000319449|RUFY1;REV__nc|ENSG00000176783|Q96T51-2|RUFY1;REV__nc|ENSG00000176783|Q96T51-3|RUFY1 6.723162845929126 0.4397169348982109 1 [{I|L}V]{I|L}DE 5 -1 53.456 0 0 4.4602 0 0 0 626.1648043268186 626.1648043268186 35.496812376923046 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 [{I|L}V]{I|L}DE 4.4602 - 22 + NaN NaN 131046.8 NaN 8798 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11530 53.998 NaN 103960 35 0 7705.3 0.261 + 7656 FYITSRTQF 9 49 581.8000889095283 1161.5856248858565 2 581.7984008789062 MULTI HCD FTMS 0 0 0 11522 36842.421875 0.4932562866294696 1 -0.029521942138671875 8 Unmodified _FYITSRTQF_ ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC 21.536976647645854 0.1742816388551942 1 [Y{M(Oxidation (M))|F}]{I|L}[DV][{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F} 9 5 + 33.011 0 0 2.8419 2.8419 87.955 0 0 0 3.925449767853312 26.02089220734142 3.925449767853312 33.010592250701606 0 1.2887254899964358 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}[DV][{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F} 2.8419 - 52 NaN NaN 100534.3 NaN 8799 2729 11522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11532 54.003 NaN 740510 35 0 132000 0.327 -1 NIVCHLQN 8 77 499.2482270215876 996.4819011099752 2 499.25885009765625 MULTI HCD FTMS 0 0 0 11531 31731.314453125 0.5125212940202606 8 -0.22958755493164062 1 Carbamidomethyl (C) _NIVC(Carbamidomethyl (C))HLQN_ nc|ENSG00000292366|P51809-2|VAMP7 18.13498045792455 0.4603629008820478 1 YPWYQG 6 -1 39.136 0 0 3.9274 0 0 0 199.10874353580314 199.10874353580314 10.093728280886936 0 0 0 0 0.2302046884880938 1.2218487496163564 0 0.25 YPWYQG 3.9274 - 442 + NaN NaN 194696.4 NaN 8800 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11533 54.007 NaN 863160 35 0 55913 0.261 + -1 MMSMLTYS 8 87 506.19536184660836 1010.3761707600167 2 506.1957702636719 MULTI HCD FTMS 0 0 0 11531 268535.3125 0.3865171646468943 -4 0.1181793212890625 2 3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))SM(Oxidation (M))LTYS_ REV__ENST00000332211.10_2_10:76980682-76982077:+|nuORF 4.75600775471527 0.5349361699807423 1 EAT{I|L} 4 -1 24.36 0 0 2.411 0 0 578.1567391877687 0 578.1567391877687 0 10.380325230808154 0 0 0 0.6747425010840047 0 0.2742275032520141 0 EAT{I|L} 2.411 - 62 NaN NaN 222536.5 NaN 8801 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11534 54.011 NaN 240160 35 0 33545 0.261 -1 FPDRIMNTF 9 53 578.7763288981632 1155.5381048631264 2 578.7763671875 MULTI HCD FTMS 0 0 0 11531 70772.5703125 0.09586688344975498 24 -0.5667190551757812 3 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 22.65808497894818 0.16459551161911185 1 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4 -1 36.983 0 0 3.2005 0 0 628.3341102209216 0 628.3341102209216 0 22.034021960761265 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.2005 + + 44 NaN NaN 127898.6 NaN 8802 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11535 54.014 NaN 122430 35 0 16297 0.261 + 14047 KYVGQLAVL 9 46 495.802606152837 989.590659372474 2 495.8028564453125 MULTI HCD FTMS 0 0 0 11531 53861.1171875 0.7752859125750029 1 -0.029529571533203125 4 Unmodified _KYVGQLAVL_ ENSG00000118193|ENST00000367350|KIF14 25.399314129420986 0.14091189997036632 1 {I|L}AV{I|L} 4 5 38.175 0 0 3.8577 0 0 575.3075428693375 0 575.3075428693375 0 28.883578386120234 0 0 0 0.9247425010840047 0 0 0 + {I|L}AV{I|L} 3.8577 + + 43 NaN NaN 109564.2 NaN 8803 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11536 54.018 NaN 295940 35 0 30782 0.261 + 24106 RYALQMEQL 9 60 576.2972215864361 1150.579890239672 2 576.297607421875 MULTI HCD FTMS 0 0 0 11531 100546.640625 0.573279142960383 -3 0.08864593505859375 5 Unmodified _RYALQMEQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 63.227496030279354 0.01306643085373406 1 [YR]A{I|L}QMEQ{I|L} 9 0 + 76.846 0 0 6.6789 6.6789 89.192 0 0 0 5.6424927368725974 64.39896278884483 5.6424927368725974 9.208187539523749 0 2.0994850021680094 0 0 0.4247425010840047 + + [YR]A{I|L}QMEQ{I|L};[YR]A{I|L}QME[AG]{I|L};[YR]A{I|L}[AG]MEQ{I|L};[YR]A{I|L}QEMQ{I|L};[YR]AEQ{I|L}MQ{I|L};[YR]A{I|L}[AG]ME[AG]{I|L};[YR]A{I|L}QEM[AG]{I|L};[YR]A{I|L}[AG]EMQ{I|L};[YR]AE[AG]{I|L}MQ{I|L};[YR]AEQ{I|L}M[AG]{I|L} 6.6789;5.8786;5.8786;5.7654;5.6557;5.0821;4.9651;4.9651;4.8554;4.8554 +;-;-;-;-;-;-;-;-;- + 523 NaN NaN 123932 NaN 8804 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11537 54.021 NaN 100680 35 0 10794 0.261 + 27151 SYNDYVREF 9 35 596.7672197378898 1191.5198865425796 2 596.7671508789062 MULTI HCD FTMS 0 0 0 11531 62719.40234375 0.9896242770504967 -1 0.029521942138671875 6 Unmodified _SYNDYVREF_ ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1 36.39500950444726 0.08189370318150108 1 {[{M(Oxidation (M))|F}C]|[YS]}NDYVRE{M(Oxidation (M))|F} 9 0 + 54.007 0 0 4.5326 4.5326 90.439 0 0 0 9.041068762088997 43.03781560677692 9.041068762088997 54.00691573685748 0 2.3935078169319297 0 0.5 0 + + {[{M(Oxidation (M))|F}C]|[YS]}NDYVRE{M(Oxidation (M))|F} 4.5326 + + 69 NaN NaN 118504.9 NaN 8805 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11538 54.024 NaN 133790 35 0 13902 0.261 + 7844 FYRTVSSFGV 10 56 581.8000889095283 1161.5856248858565 2 582.8051147460938 MULTI HCD FTMS 0 0 0 11531 8550.3388671875 0.17902521899826568 1 -0.029529571533203125 7 Unmodified _FYRTVSSFGV_ ENSG00000124177|ENST00000373233|CHD6 5.731851221503515 0.44496410492002586 1 VS{[MS]|[{M(Oxidation (M))|F}A]} 4 7 11.427 0 0 0.98371 0 0 739.4044858251128 0 739.4044858251128 0 0.2287874528033722 0 0 0 0 0 0 0 VS{[MS]|[{M(Oxidation (M))|F}A]} 0.98371 - 31 + NaN NaN 103355.8 NaN 8806 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11539 54.028 NaN 63187 35 0 11559 0.263 -1 LAVCAEHL 8 44 456.7363432089696 NaN 0 456.736328125 PEAK HCD FTMS 0 0 0 11531 32804.8515625 0.7145615653227508 1 -0.029529571533203125 8 Carbamidomethyl (C) _LAVC(Carbamidomethyl (C))AEHL_ ENST00000429227.1_1_1:229394807-229406740:-|nuORF 26.34127834903884 0.38080804198364926 1 A 1 -1 9.6041 0 0 1.0537 0 0 113.09053202165167 724.3141756215546 837.4047076432063 0 0 0 0 0 0.5 0 0 0 A 1.0537 + + 3 + NaN NaN 103355.5 NaN 8807 2730 11531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11541 54.033 NaN 2066900 35 0 317660 0.327 + 17943 MITDLEERL 9 106 568.2866526770156 1134.558752420831 2 568.2869873046875 MULTI HCD FTMS 0 0 0 11540 1259302.5 0.9247932291140751 2 -0.052448272705078125 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 160.6895995991744 8.89223804155775E-09 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 117.3 0 0 10.339 10.339 96.112 0 0 0 21.851154920377382 14.080306233405295 14.080306233405295 14.080306233405295 0 2.9247425010840047 2 2.1223637474483468 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DT{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DT{I|L}ER{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{[RE]|[WV]}{I|L}{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DT{[RE]|[WV]}{I|L}{I|L}E;[VP]TQSAATT{M(Oxidation (M))|F}{I|L};[VP]QQ{[DS]|[MA]|[CV]|TT}TT{M(Oxidation (M))|F}{I|L};{[RE]|[WV]}E{I|L}DT{I|L}{M(Oxidation (M))|F}{I|L} 10.339;9.0981;8.6939;8.4132;7.4529;5.9631;4.3179;2.8938;2.7393;2.6414 +;-;-;+;-;-;-;-;-;- + 5347 NaN NaN 399574.8 NaN 8808 2731 11540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11542 54.037 NaN 1380400 35 0 137750 0.262 + 18776 NADAIVVKL 9 89 471.7845208438265 941.554488754453 2 471.7846374511719 MULTI HCD FTMS 0 0 0 11540 916288.25 0.8041825841728992 1 -0.02292633056640625 2 Unmodified _NADAIVVKL_ ENSG00000197157|ENST00000354725|SND1 139.78183599554657 1.962818552322152E-05 1 {[QG]|[NA]}DA{I|L}VVK{I|L} 9 0 + 121.3 0 0 12.883 12.883 98.052 0 0 0 26.312033112643846 16.478174818886373 16.478174818886373 26.312033112643846 0 2.6861818737241734 1.6989700043360187 0.6747425010840047 2.0858317385287872 + + {[QG]|[NA]}DA{I|L}VVK{I|L};NADA{I|L}VVK{I|L};{[QG]|[NA]}DAVV{I|L}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}V[DN]V[VG]{I|L} 12.883;10.088;9.2321;0.73758 +;+;-;- + 396 NaN NaN 296886.6 NaN 8809 2731 11540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11543 54.041 NaN 323350 35 0 39616 0.261 + 1514 AYVGNLPRI 9 66 501.79017233795776 1001.5657917427155 2 501.79010009765625 MULTI HCD FTMS 0 0 0 11540 172866.375 0.2219207857318516 14 -0.38304901123046875 3 Unmodified _AYVGNLPRI_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 61.357469665136826 0.01568246967499496 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VG[QA]{I|L}PA{I|L} 10 3 + 67.713 0 0 6.7607 6.7607 85.196 0 0 0 8.961849229531055 8.961849229531055 8.961849229531055 1.575994759290964 0 2.1549471895720984 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VG[QA]{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R[QA]{I|L}PA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VGN{I|L}PR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VGGG{I|L}PR{I|L} 6.7607;6.6033;5.985;5.8659;4.9465 -;-;-;+;- + 263 NaN NaN 138678.4 NaN 8810 2731 11540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11544 54.044 NaN 174310 35 0 24930 0.261 + -1 LPLHYCCVQL 10 52 434.8819931082321 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 11540 35764.953125 0.5104724646336739 -18 0.5051383972167969 4 2 Carbamidomethyl (C) _LPLHYC(Carbamidomethyl (C))C(Carbamidomethyl (C))VQL_ REV__ENSG00000163482|ENST00000295709|STK36;REV__nc|ENSG00000163482|Q9NRP7-2|STK36 4.189502756095605 0.3365986553207265 1 R 1 -1 5.4846 0 0 0.63204 0 0 300.4466054340351 408.1826571100219 708.629262544057 0 0 0 0 0 0 0 0 0 R 0.63204 - 20 + NaN NaN 107352.4 NaN 8811 2731 11540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11545 54.047 NaN 185730 35 0 18472 0.261 + 3318 EEIQQRLAQF 10 64 631.3302205961043 1260.6458882590084 2 631.3311157226562 MULTI HCD FTMS 0 0 0 11540 73750.6328125 1 0 0 5 Unmodified _EEIQQRLAQF_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 59.368380827593164 0.04371880213842136 1 QA{I|L}[C(Carbamidomethyl (C))K]{I|L}AQ{M(Oxidation (M))|F} 9 5 38.751 0 0 3.0739 0 0 183.0899323037334 0 183.0899323037334 0 31.303878175653644 0 0 0 1.5356668758921828 0 0 0.3807196863200844 QA{I|L}[C(Carbamidomethyl (C))K]{I|L}AQ{M(Oxidation (M))|F} 3.0739 - 80 + NaN NaN 115813.7 NaN 8812 2731 11540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11546 54.051 NaN 129040 35 0 30327 0.261 + 12054 KISPSKLLNK 10 46 564.3591741141402 NaN 0 564.7886352539062 PEAK HCD FTMS 0 0 0 11540 16072.67578125 0.627545932498096 10 -0.2751426696777344 6 Unmodified _KISPSKLLNK_ REV__MAPKBP1|p.R17K|1|0.13|ENSG00000137802|chr15:41775325-41775325|G/A|missense_variant 1.1933415558491238 0.33916295405077446 1 QE 2 -1 4.6927 0 0 0.4165 0 0 129.33393553121147 737.2440889947874 866.5780245259989 0 0 0 0 0 0 0 0 0 QE 0.4165 - 5 + NaN NaN 100514.2 NaN 8813 2731 11540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11548 54.055 NaN 1012100 35 0 155840 0.326 + 8345 GYIERPQLI 9 76 544.8085079548114 1087.6024629764227 2 544.8087768554688 MULTI HCD FTMS 0 0 0 11547 456801.15625 0.658021202151492 2 -0.059051513671875 1 Unmodified _GYIERPQLI_ ENSG00000164329|ENST00000453514|TENT2;nc|ENSG00000164329|Q6PIY7-2|TENT2 85.64151623876279 0.004640175941193596 1 [YG]{I|L}ER[QP]{I|L}{I|L} 9 0 + 82.853 0 0 7.618 7.618 92.124 0 0 0 6.041747505291809 6.041747505291809 6.041747505291809 11.020599913279625 0 2.3494850021680094 2 0 0.6505149978319906 + + [YG]{I|L}ER[QP]{I|L}{I|L};[YG]E{I|L}R[QP]{I|L}{I|L};[YG]{I|L}ER{I|L}[QP]{I|L};[YG]E{I|L}R{I|L}[QP]{I|L};{[QN]|[E{I|L}]|[KN]}[YG]R[QP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}R[YG][QP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]R{I|L}[QP]{I|L};[QP]{I|L}{I|L}[R{M(Oxidation (M))|F}]{I|L}{[DS]|[MA]|[CV]|TT};[QP]{I|L}{I|L}[R{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}{I|L};[QP]{I|L}{[RE]|[WV]}[YG]{I|L}{I|L} 7.618;6.6047;6.5625;5.5492;3.0465;2.2173;1.991;1.8061;1.7146;1.4808 +;-;-;-;-;-;-;-;-;- + 560 NaN NaN 238269.3 NaN 8814 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11549 54.06 NaN 1383000 35 0 322260 0.262 + 7601 FYHKYFNYL 9 82 432.2132815060607 1293.6180151183821 3 432.21319580078125 MULTI HCD FTMS 0 0 0 11547 464217.5 0.11987837529348694 23 -0.52362060546875 2 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 22.736283301280096 0.1639198954644489 1 {M(Oxidation (M))|F}Y{I|L} 3 6 35.005 0 0 2.706 0 0 852.3851185529312 0 852.3851185529312 0 27.900990676322905 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}Y{I|L} 2.706 - 36 NaN NaN 301857.7 NaN 8815 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11550 54.063 NaN 314270 35 0 42034 0.261 + 16719 LYANMFERL 9 75 586.7918096295268 1171.5690663258536 2 586.7921142578125 MULTI HCD FTMS 0 0 0 11547 130563.71875 0.34232730248603666 3 -0.09523391723632812 3 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 87.25819977447905 0.004597812622239197 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 98.672 0 0 8.4222 8.4222 92.149 0 0 0 79.08584297535363 9.009461452434238 9.009461452434238 9.208187539523749 0 2.309894379144197 2 0.7887254899964358 0.2614393726401688 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE{I|L} 8.4222;7.6363;6.3188;6.2993;5.6504;5.6309;5.2864;5.0257;5.0061;4.618 +;-;+;-;-;-;-;-;-;- + 610 + NaN NaN 133180 NaN 8816 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11551 54.067 NaN 272560 35 0 37927 0.261 -1 LPDMVVSHL 9 67 513.7679631974995 1025.521373461799 2 513.7681274414062 MULTI HCD FTMS 0 0 0 11547 59736.90625 0.03693763838225912 54 -1.3149528503417969 4 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 30.636539890814138 0.10832830463492794 1 {I|L}P{[{M(Oxidation (M))|F}D]|MM}VV 6 -1 38.338 0 0 3.7384 0 0 0 352.1621492975219 352.1621492975219 27.85335007137462 0 0 0 0 0.4247425010840047 1.3979400086720375 0.4247425010840047 0 {I|L}P{[{M(Oxidation (M))|F}D]|MM}VV 3.7384 + + 64 + NaN NaN 129549.9 NaN 8817 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11552 54.07 NaN 360200 35 0 83032 0.261 + 25093 SAEELDAQL 9 53 488.2349317974036 974.4553106616072 2 488.2349548339844 MULTI HCD FTMS 0 0 0 11547 51195.32421875 0.36265402139110353 3 -0.09523391723632812 5 Unmodified _SAEELDAQL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 41.95555342248728 0.056367691549927025 1 {I|L}DAQ{I|L} 5 4 40.005 0 0 4.1054 0 0 416.1551686017594 0 416.1551686017594 0 25.228787452803374 0 0 0 1.579689690656103 0 0.6505149978319906 0 + {I|L}DAQ{I|L} 4.1054 + + 87 NaN NaN 142614.6 NaN 8818 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11553 54.073 NaN 250170 35 0 41654 0.261 -1 TMAAKKNRQ 9 41 532.287029660657 1062.559506388114 2 532.287353515625 MULTI HCD FTMS 0 0 0 11547 38773.19921875 0.556348980814642 5 -0.15096282958984375 6 Oxidation (M) _TM(Oxidation (M))AAKKNRQ_ ENSG00000152242|ENST00000615052|C18orf25;nc|ENSG00000152242|Q96B23-2|ARK2N 6.723162845929126 0.3000504726104499 1 {I|L}ADD 4 -1 26.198 0 0 2.4655 0 0 630.3609486310562 0 630.3609486310562 0 23.97940008672037 0 0 0 1 0 0 0 {I|L}ADD 2.4655 - 16 NaN NaN 123884.1 NaN 8819 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11554 54.077 NaN 187160 35 0 22439 0.261 + 24324 RYGPIVDVY 9 49 541.2857113381859 1080.5568697431718 2 541.2879028320312 MULTI HCD FTMS 0 0 0 11547 28881.607421875 0.5628535490485597 1 -0.029521942138671875 7 Unmodified _RYGPIVDVY_ ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10 13.042465956692817 0.2476723265019929 1 [VS]{I|L}{[WT]|[RM]}VDVY 9 5 + 46.348 0 0 4.2893 4.2893 89.757 0 0 0 4.137342758552691 27.525749891599528 4.137342758552691 45.48455006504028 0 1.3494850021680094 0 0 0 [VS]{I|L}{[WT]|[RM]}VDVY;[WM]T[{I|L}V][{M(Oxidation (M))|F}V]W;[VS]{I|L}{[WT]|[RM]}[YK]{[QG]|[NA]} 4.2893;0.079926;0.078565 -;-;- 122 NaN NaN 128906.6 NaN 8820 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11555 54.08 NaN 82042 35 0 5386.6 0.261 + 4436 EYGKVEFVF 9 46 559.2823544292277 NaN 0 559.7637329101562 PEAK HCD FTMS 0 0 0 11547 5935.42333984375 0.8236978800857677 1 -0.029521942138671875 8 Unmodified _EYGKVEFVF_ ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1;TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant 13.042465956692817 0.23204487237355156 1 VQ 2 8 13.271 0 0 1.1886 0 0 165.07416465026057 721.3132418268186 886.3874064770791 0 0 0 0 0 0 0 0 0.3807196863200844 VQ 1.1886 - 11 + NaN NaN 92988.7 NaN 8821 2732 11547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11557 54.085 NaN 415260 35 0 48223 0.327 + 4336 EVVIYVVER 9 75 553.3160414789398 1104.6175300246796 2 553.3164672851562 MULTI HCD FTMS 0 0 0 11556 118116.5859375 0.4565599106045163 3 -0.09525680541992188 1 Unmodified _EVVIYVVER_ ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54 78.06048673739656 0.006479972202176041 1 {NN|[MP]|[D{I|L}]|[EV]}V{I|L}YVVER 9 0 + 78.183 0 0 7.0778 7.0778 93.067 0 0 0 1.8248787848604167 1.8248787848604167 1.8248787848604167 21.063448366204923 0 2.3288245576287263 1.3010299956639813 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}V{I|L}YVVER;{NN|[MP]|[D{I|L}]|[EV]}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}R;{NN|[MP]|[D{I|L}]|[EV]}V{I|L}Q[KS]G[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}V{I|L}Q[KS]{M(Oxidation (M))|F}[VG];{NN|[MP]|[D{I|L}]|[EV]}V{I|L}[AG][KS]G[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}V{I|L}[AG][KS]{M(Oxidation (M))|F}[VG] 7.0778;5.171;3.6635;3.5504;2.8338;2.7207 +;-;-;-;-;- + 300 + NaN NaN 149648.9 NaN 8822 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11558 54.089 NaN 334720 35 0 49785 0.261 + 35447 YYEKQFPEI 9 63 608.7979284011249 1215.5813038690496 2 608.7984619140625 MULTI HCD FTMS 0 0 0 11556 145520.015625 0.3394600630159998 4 -0.12144088745117188 2 Unmodified _YYEKQFPEI_ ENSG00000141027|ENST00000268712|NCOR1;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2 69.33821966488729 0.009302356455414924 1 YYEKQ{M(Oxidation (M))|F}PE{I|L} 9 0 + 92.106 0 0 7.5771 7.5771 90.79 0 0 0 24.76203644159419 67.58024070117017 24.76203644159419 9.208187539523749 0 2.274227503252014 2 0 0.7302046884880937 + + YYEKQ{M(Oxidation (M))|F}PE{I|L};YYEK[AG]{M(Oxidation (M))|F}PE{I|L};[EP]{I|L}W{[DA]|[EG]}{M(Oxidation (M))|F}PE{I|L};[EP]{I|L}{[DA]|[EG]}W{M(Oxidation (M))|F}PE{I|L};[EP][DN]K[KP]{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}PW{[DA]|[EG]}{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}P{[DA]|[EG]}W{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}P[HN][HM]PE{I|L};YY[{I|L}P][Y{I|L}]Q{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[QN]|[E{I|L}]|[KN]}PWWTK{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.5771;6.8196;4.3107;4.3107;3.774;3.2661;3.2661;1.9897;1.4906;0.83318 +;-;-;-;-;-;-;-;-;- + 488 NaN NaN 149662.1 NaN 8823 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11559 54.093 NaN 687300 35 0 64706 0.261 + 9755 HYILHNSFF 9 85 589.2930832030781 1176.5716134729562 2 589.292724609375 MULTI HCD FTMS 0 0 0 11556 320907.59375 0.21401519161792557 -6 0.170623779296875 3 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 110.6747026088012 0.0028322563155251486 1 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 95.534 0 0 8.1197 8.1197 86.833 0 0 0 0.29020793153021884 0.29020793153021884 0.29020793153021884 0.29020793153021884 0 2.385151878060192 1.5228787452803376 1.113982988912431 0.3252574989159953 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVN[{I|L}T]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]{M(Oxidation (M))|F}H{M(Oxidation (M))|F};HYVGG[{I|L}T]H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.1197;8.095;7.3124;7.0606;6.5556;6.3839;6.0068;5.6577;5.3376;4.5986 -;+;-;-;-;+;-;-;-;- + 949 + NaN NaN 188377.4 NaN 8824 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11560 54.096 NaN 340780 35 0 111330 0.264 + 27007 SYLQQNGVQNY 11 55 438.54202759713576 1312.6042533916072 3 438.5423889160156 MULTI HCD FTMS 0 0 0 11556 68659.890625 0.17662443661239272 6 -0.16391754150390625 4 Unmodified _SYLQQNGVQNY_ CUL5-ATM|1|fusion;CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5 6.234356020891411 0.3915788988406848 1 SY{I|L} 3 8 54.693 0 0 4.1667 0 0 0 946.4032613477614 946.4032613477614 41.197887582883936 0 0 0 0 0.8494850021680094 2 0 0 + SY{I|L} 4.1667 + + 28 + NaN NaN 144434.3 NaN 8825 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11561 54.1 NaN 302410 35 0 26319 0.261 + -1 PDLGEIIEM 9 72 516.7495181166456 NaN 0 516.7488403320312 PEAK HCD FTMS 0 0 0 11556 50143.30078125 0.5677240116928276 -2 0.052448272705078125 5 Oxidation (M) _PDLGEIIEM(Oxidation (M))_ REV__ENST00000261658.6_1_16:14762276-14762351:+|nuORF 26.88365393820708 0.14119366324382274 1 EV{I|L} 3 -1 26.198 0 0 2.5398 0 0 165.04432649123027 522.2226656549436 687.2669921461738 0 0 0 0 0 1.3494850021680094 0 0 0 EV{I|L} 2.5398 - 61 + NaN NaN 134645.8 NaN 8826 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11562 54.103 NaN 116420 35 0 15491 0.261 + 10435 IPCEEGDKLQL 11 58 622.8129966739257 1243.6114404146513 2 622.8129272460938 MULTI HCD FTMS 0 0 0 11556 76874.0546875 1 0 0 6 Unmodified _IPCEEGDKLQL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 18.721224879955976 0.29396376558286563 1 {I|L}PC 3 8 21.682 0 0 1.7435 0 0 0 927.4389132135374 927.4389132135374 16.197887582883936 0 0 0 0 0 0 0 0 + {I|L}PC 1.7435 + + 27 + NaN NaN 114695 NaN 8827 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11563 54.106 NaN 112550 35 0 15582 0.261 -1 RYPTTFVMV 9 38 565.2890132120592 1128.5634734909183 2 565.2899169921875 MULTI HCD FTMS 0 0 0 11556 25508.064453125 0.36167463672273953 9 -0.2554893493652344 7 Oxidation (M) _RYPTTFVM(Oxidation (M))V_ ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF 5.731851221503515 0.3075653528928475 1 V{M(Oxidation (M))|F}V 3 -1 22.92 0 0 2.0309 0 0 765.3829823224625 0 765.3829823224625 0 15.929862658764264 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F}V 2.0309 + + 19 NaN NaN 110729.2 NaN 8828 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11564 54.11 NaN 138010 35 0 13326 0.261 + 9121 HPGSLSLWEP 10 61 561.7829852016356 1121.551417470071 2 562.7843627929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _HPGSLSLWEP_ ENST00000579572.1_1_17:80193878-80195110:+|nuORF 3.5964929083625545 0.45626689593999237 1 PQ 2 9 16.198 0 0 1.4442 0 0 878.4300404279312 0 878.4300404279312 0 9.208187539523749 0 0 0 0 0 0 0 PQ 1.4442 - 15 NaN NaN 103579.9 NaN 8829 2733 11556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11566 54.115 NaN 1286500 35 0 170020 0.327 + 876 AYAIIKEEL 9 76 525.2974074522662 1048.5802619713322 2 525.2975463867188 MULTI HCD FTMS 0 0 0 11565 735909.3125 0.2233159041000967 6 -0.17359542846679688 1 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 99.75527289724121 0.004270341300239591 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 9 0 + 86.766 0 0 8.2746 8.2746 90.207 0 0 0 5.69546598454744 57.945064397082206 5.69546598454744 7.007046801327732 0 2.16944517631652 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}VASE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}V{[SA]|[TG]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AV{[SA]|[TG]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AKEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}[DG][{I|L}T]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}[DG][{I|L}T]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}A[DG][{I|L}T]{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 8.2746;7.6064;7.0557;6.1977;5.8686;5.7729;5.361;4.1421;2.8593;1.8952 +;-;-;-;-;-;-;-;-;- + 949 NaN NaN 276619.6 NaN 8830 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11567 54.119 NaN 603480 35 0 157600 0.261 + 28149 TITDDCDTI 9 75 498.71314497055334 995.4117370079067 2 498.71331787109375 MULTI HCD FTMS 0 0 0 11565 236005.234375 1 0 0 2 Unmodified _TITDDCDTI_ ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 10.823927491677226 0.26684000660059787 1 {I|L}PAED 5 7 30.094 0 0 3.0232 0 0 0 467.14740930728755 467.14740930728755 11.165827977365623 0 0 0 0 1.1237125054200234 0 0.805462187404089 0 {I|L}PAED 3.0232 - 87 + NaN NaN 178966 NaN 8831 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11568 54.123 NaN 1225300 35 0 63362 0.261 + 6213 FPEQIAEKL 9 115 537.7949039085173 1073.5752548838345 2 537.7950439453125 MULTI HCD FTMS 0 0 0 11565 291101.96875 0.5157651357705774 -7 0.20015335083007812 3 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 79.42699986076722 0.0060377907040421955 1 {I|L}MEQ{I|L}AE 7 4 63.608 0 0 5.9248 0 0 0 256.16620813541255 256.16620813541255 37.132658970556314 0 0 0 0 2.0387254899964358 1.3979400086720375 0.8754223615525999 0.3054621874040891 {I|L}MEQ{I|L}AE 5.9248 - 1692 + NaN NaN 270717.7 NaN 8832 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11569 54.126 NaN 273910 35 0 41197 0.261 + 24811 RYPLLLQKI 9 77 572.3659738446571 1142.7173947561141 2 572.3662109375 MULTI HCD FTMS 0 0 0 11565 137344.578125 0.5171692081545854 8 -0.22595977783203125 4 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 18.1463463914782 0.20357593197100715 1 {I|L}QK{I|L} 4 5 38.175 0 0 3.3407 0 0 642.3856596379611 0 642.3856596379611 0 21.977437731477423 0 0 0 0.9247425010840047 0 0 0 + {I|L}QK{I|L} 3.3407 + + 176 NaN NaN 126242.7 NaN 8833 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11570 54.129 NaN 337780 35 0 15878 0.261 + 34068 YNKGTSLAEK 10 89 555.7946823975724 1109.5748118619447 2 555.7947998046875 MULTI HCD FTMS 0 0 0 11565 82866.2109375 0.7505051482061711 1 -0.036182403564453125 5 Unmodified _YNKGTSLAEK_ ENST00000473204.5_1_9:95571946-95584543:+|nuORF;nc|ENSG00000187984|Q9H560|ANKRD19P 13.042465956692817 0.38911719078024076 1 [YN]D{M(Oxidation (M))|F}G 5 8 31.805 0 0 2.8664 0 0 0 510.3288761532135 510.3288761532135 3.0892712925559707 0 0 0 0 0 1.6989700043360187 0.28872548999643577 0.28872548999643577 [YN]D{M(Oxidation (M))|F}G 2.8664 - 742 NaN NaN 142052.8 NaN 8834 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11571 54.132 NaN 363400 35 0 74233 0.263 + -1 YSLVELTVMQK 11 53 442.9037986667762 1325.6895666005287 3 442.90423583984375 MULTI HCD FTMS 0 0 0 11565 72377.1953125 0.5042509504221613 6 -0.17359542846679688 6 Oxidation (M) _YSLVELTVM(Oxidation (M))QK_ REV__ENSG00000138735|ENST00000354960|PDE5A;REV__nc|ENSG00000138735|O76074-2|PDE5A 5.868138319507137 0.39318500527288264 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L} 3 -1 30.163 0 0 2.2752 0 0 0 959.4879367120608 959.4879367120608 8.735899786366236 0 0 0 0 0.9247425010840047 1.0457574905606752 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L} 2.2752 + + 21 + NaN NaN 135159.6 NaN 8835 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11572 54.136 NaN 339130 35 0 62609 0.261 + -1 YVNQLFCL 8 63 528.7641535972713 1055.5137542613425 2 529.2819213867188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YVNQLFC(Carbamidomethyl (C))L_ REV__ENST00000559350.5_1_15:60678227-60682440:-|nuORF 14.581692164780916 0.48650662947107914 1 PV[SG][{I|L}V]SS{M(Oxidation (M))|F} 9 -1 29.376 0 0 2.7831 0 0 164.0420416463382 0 164.0420416463382 0 2.6934091597378575 0 0 0 0.2742275032520141 0 1.031234684152075 0 PV[SG][{I|L}V]SS{M(Oxidation (M))|F} 2.7831 - 179 + NaN NaN 132588.1 NaN 8836 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11573 54.139 NaN 174100 35 0 23606 0.261 + 17740 MDQIMESVL 9 73 533.251384975981 1064.4882170187618 2 533.2515258789062 MULTI HCD FTMS 0 0 0 11565 29142.103515625 0.3069042086197696 17 -0.41363525390625 8 Unmodified _MDQIMESVL_ ENSG00000213551|ENST00000372950|DNAJC9;ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENST00000557141.1_1_14:68265921-68266314:+|nuORF 13.042465956692817 0.2476723265019929 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[WC(Carbamidomethyl (C))]QSV 7 7 24.16 0 0 2.2696 0 0 0 128.07232611714338 128.07232611714338 11.545700912310224 0 0 0 0 0.3252574989159953 2 0.5 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[WC(Carbamidomethyl (C))]QSV 2.2696 - 32 NaN NaN 105254.5 NaN 8837 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11574 54.142 NaN 122470 35 0 14785 0.261 -1 FYRKYMCP 8 54 582.7695637464891 1163.524574559778 2 582.7703857421875 MULTI HCD FTMS 0 0 0 11565 16232.677734375 0.14284026313955028 25 -0.5329627990722656 9 Carbamidomethyl (C) _FYRKYMC(Carbamidomethyl (C))P_ nc|ENSG00000134014|Q9H9T3-4|ELP3 9.347437153973935 0.5250182646323369 1 SVS{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 25.63 0 0 2.2028 0 0 654.3153553693375 0 654.3153553693375 0 19.8106982151547 0 0 0 0.8807196863200843 0 0 0 SVS{[MS]|[{M(Oxidation (M))|F}A]} 2.2028 - 79 NaN NaN 108770.9 NaN 8838 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11575 54.146 NaN 104650 35 0 6981.4 0.261 + -1 PNAQWYTQEM 10 46 642.2693571307842 1282.5241613283683 2 642.2695922851562 MULTI HCD FTMS 0 0 0 11565 9263.3076171875 0.20485143821039445 3 -0.09191131591796875 10 Oxidation (M) _PNAQWYTQEM(Oxidation (M))_ REV__CON__ENSEMBL:ENSBTAP00000006074;REV__ENSG00000105664|ENST00000222271|COMP;REV__nc|ENSG00000105664|P49747-2|COMP 8.745405648335112 0.42901288225909884 1 EV{[QG]|[NA]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VE{M(Oxidation (M))|F} 9 -1 15.876 0 0 1.2379 0 0 182.06561748246833 0 182.06561748246833 0 -2.0828878335435483 -2.0828878335435483 0 0 0.27422750325201406 0 0 0 EV{[QG]|[NA]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VE{M(Oxidation (M))|F} 1.2379 - 27 + NaN NaN 102683.5 NaN 8839 2734 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11577 54.151 NaN 4808700 35 0 800720 0.327 + 658 APLEDEATL 9 89 479.73987853886996 957.4652041445399 2 479.74017333984375 MULTI HCD FTMS 0 0 0 11576 4227569 0.9847270225182605 2 -0.055728912353515625 1 Unmodified _APLEDEATL_ ENSG00000149806|ENST00000529639|FAU 139.54400939418784 2.61670173137287E-05 1 [PA]{I|L}EDEAT{I|L} 9 0 + 98.362 0 0 10.273 10.273 92.916 0 0 0 13.010299956639813 16.478174818886373 13.010299956639813 8.57840941039747 0 1.7059771852360797 1.6989700043360187 1.2708865128625189 0 + + [PA]{I|L}EDEAT{I|L};[PA]{I|L}DEEAT{I|L};[{I|L}P]AEDEAT{I|L};{[QN]|[E{I|L}]|[KN]}PADEAT{I|L};[{I|L}P]EADEAT{I|L};[{I|L}P]ADEEAT{I|L};{[QN]|[E{I|L}]|[KN]}PGEEAT{I|L};{[QN]|[E{I|L}]|[KN]}PDAEAT{I|L};[{I|L}P]EGEEAT{I|L};[{I|L}P]EDAEAT{I|L} 10.273;9.3772;8.9144;8.7657;8.4734;8.0184;7.8698;7.7393;7.5775;7.447 +;-;-;-;-;-;-;-;-;- + 2533 NaN NaN 527184.6 NaN 8840 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11578 54.155 NaN 1313300 35 0 329860 0.261 + 655 APLCLWYD 8 77 490.73106044994057 979.4475679666812 2 490.7312316894531 MULTI HCD FTMS 0 0 0 11576 834306.8125 0.9300154590259176 2 -0.055728912353515625 2 Unmodified _APLCLWYD_ REV__nc|ENSG00000198431|Q16881-6|TXNRD1 42.96799951952854 0.1928021754174411 1 AP{I|L}EDDE 7 -1 78.364 0 0 8.0009 0 0 0 207.11402307681877 207.11402307681877 29.426806100157563 0 0 0 0 1.6989700043360187 1.6989700043360187 1.5044321917401078 0 AP{I|L}EDDE 8.0009 - 606 + NaN NaN 302081.1 NaN 8841 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11579 54.159 NaN 2606900 35 0 202090 0.261 + 28346 TPDEIDHVF 9 120 536.7507803122957 1071.4870076913912 2 536.7510375976562 MULTI HCD FTMS 0 0 0 11576 1071741.375 0.33470920196158194 -4 0.11816024780273438 3 Unmodified _TPDEIDHVF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 225.63253280303684 3.884279688775432E-24 1 TPDE{I|L}DHV{M(Oxidation (M))|F} 9 0 + 106.57 0 0 9.9464 9.9464 95.011 0 0 0 10.987672155882109 10.987672155882109 10.987672155882109 10.987672155882109 0 2.774227503252014 1.5228787452803376 1.6593793813122062 0 + + TPDE{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}DHV{M(Oxidation (M))|F};[DP]TE{I|L}DHV{M(Oxidation (M))|F};[DP]ET{I|L}DHV{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}PE{I|L}DHV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT{I|L}DHV{M(Oxidation (M))|F};[PS]EE{I|L}DHV{M(Oxidation (M))|F};[TP]EEVDHV{M(Oxidation (M))|F};[TP]DT[KS][YN]{M(Oxidation (M))|F};[DP]E{NN|[MP]|[D{I|L}]|[EV]}THV{M(Oxidation (M))|F} 9.9464;8.921;6.9514;6.1573;6.0295;6.0044;5.6467;5.6252;5.3533;4.3609 +;+;-;-;-;-;-;-;-;- + 4125 + NaN NaN 477754 NaN 8842 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11580 54.162 NaN 1118000 35 0 150840 0.261 + 34295 YPDSHLPTL 9 95 521.7637531121 1041.5129532909998 2 521.7638549804688 MULTI HCD FTMS 0 0 0 11576 503522.3125 0.8271191267750293 -3 0.09523391723632812 4 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 164.5152109175784 6.8106583686994766E-09 1 YPDSH{I|L}PT{I|L} 9 0 + 91.003 0 0 8.7376 8.7376 94.624 0 0 0 13.688918237753711 13.688918237753711 13.688918237753711 13.688918237753711 0 2.4876954943324545 1.5228787452803376 1.5314085410674876 0 + + YPDSH{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSH{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSH{I|L}TP{I|L};[DP]YSH{I|L}PT{I|L};[DP]YSH{I|L}TP{I|L};[DP][QP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PT{I|L};{I|L}N[KS]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}A{M(Oxidation (M))|F};[DP][QP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TP{I|L};[DP][QP]{[NV]|[RG]}PY{I|L} 8.7376;7.4233;6.2098;5.481;4.2675;2.2336;1.7201;1.0201;0.01344 +;+;-;-;-;-;-;-;- + 636 + NaN NaN 255551.8 NaN 8843 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11581 54.165 NaN 429820 35 0 72520 0.261 + 29372 TYQDIQNTI 9 71 548.2693775600465 1094.5242021868928 2 548.2694702148438 MULTI HCD FTMS 0 0 0 11576 155524.0625 0.040778495071088466 22 -0.4549446105957031 5 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 88.36371040165146 0.004568843997105255 1 [YT]QD{I|L}QNT{I|L} 9 0 + 80.182 0 0 7.3257 7.3257 90.377 0 0 0 22.243012119929098 64.0329422071439 22.243012119929098 9.208187539523749 0 1.8829131673969606 2 0.7742275032520141 0 + + [YT]QD{I|L}QNT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT]QD{I|L}QGGT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][PG]{[DS]|[MA]|[CV]|TT}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};{[QS]|[NT]}[YE]{I|L}QNT{I|L} 7.3257;6.4844;6.4844;6.4844;5.6471;5.6471;5.6471;5.1767;4.9524;4.2937 +;-;-;-;-;-;-;-;-;- + 665 NaN NaN 143961.2 NaN 8844 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11582 54.169 NaN 191560 35 0 46866 0.261 + -1 VIVMGEEEMM 10 52 600.2526582323411 1198.4907635314821 2 600.2527465820312 MULTI HCD FTMS 0 0 0 11576 89788.2734375 0.5877736383175524 3 -0.08189773559570312 6 2 Oxidation (M) _VIVM(Oxidation (M))GEEEMM(Oxidation (M))_ REV__ENSG00000176783|ENST00000319449|RUFY1;REV__nc|ENSG00000176783|Q96T51-2|RUFY1;REV__nc|ENSG00000176783|Q96T51-3|RUFY1 14.838274106304384 0.3723198072575719 1 [{I|L}V]{I|L}DE 5 -1 66.95 0 0 5.5862 0 0 0 626.1600435846311 626.1600435846311 43.99166239860314 0 0 0 0 1.9247425010840047 1.6989700043360187 0.8494850021680094 0 [{I|L}V]{I|L}DE 5.5862 - 32 + NaN NaN 107214.1 NaN 8845 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11583 54.172 NaN 262990 35 0 11103 0.261 -1 YNKCKRKN 8 79 555.7946823975724 1109.5748118619447 2 555.7950439453125 MULTI HCD FTMS 0 0 0 11576 101147.6015625 0.9160765870979378 2 -0.055728912353515625 7 Carbamidomethyl (C) _YNKC(Carbamidomethyl (C))KRKN_ ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF;RWDD2B|p.H196Q|1|0.1|ENSG00000156253|chr21:29007898-29007898|A/T|missense_variant 9.347437153973935 0.5250182646323369 1 S{[SA]|[TG]}{M(Oxidation (M))|F}GMS[Y{I|L}] 9 -1 25.621 0 0 2.3091 0 0 148.12009669166133 0 148.12009669166133 0 -7.878559472270577 -7.878559472270577 0 0 0 0 0.6747425010840047 0 S{[SA]|[TG]}{M(Oxidation (M))|F}GMS[Y{I|L}] 2.3091 - 482 + NaN NaN 118436.7 NaN 8846 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11584 54.175 NaN 183220 35 0 32772 0.261 -1 RFDEAYIYM 9 43 612.2741005920941 1222.533648250988 2 612.2747802734375 MULTI HCD FTMS 0 0 0 11576 73707.2265625 0.526813563940574 6 -0.156982421875 8 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 12.240655878213236 0.2545997876781172 1 Y{I|L}Y{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.4304 0 0 618.279588767775 0 618.279588767775 0 41.938200260161125 0 0 0 1 0 0 0 Y{I|L}Y{M(Oxidation (M))|F} 3.4304 + + 20 NaN NaN 114119.3 NaN 8847 2735 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11586 54.18 NaN 1087000 35 0 152950 0.327 + 17944 MITDLEERL 9 94 568.2866526770156 1134.558752420831 2 568.286865234375 MULTI HCD FTMS 0 0 0 11585 530224.375 0.38938055940589517 7 -0.17644500732421875 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 160.6895995991744 8.89223804155775E-09 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 113.4 0 0 9.9947 9.9947 89.251 0 0 0 18.89506772603255 76.76013961858636 18.89506772603255 0.7525749891599531 0 2.9247425010840047 2 1.9534021960761265 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}ERE{I|L};{[QN]|[E{I|L}]|[KN]}R{M(Oxidation (M))|F}{I|L}DTE{I|L};{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F}{I|L}ERE{I|L};{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F}{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[VG]{M(Oxidation (M))|F}{I|L}DTE{I|L};{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F}{I|L}[{I|L}A]TE{I|L} 9.9947;9.9284;8.9767;8.2493;7.5814;6.582;6.5369;5.7882;5.7704;5.659 +;-;-;+;-;-;-;-;-;- + 3649 NaN NaN 251054.2 NaN 8848 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11587 54.185 NaN 1160400 35 0 99770 0.261 -1 HALCTCCF 8 89 506.19536184660836 1010.3761707600167 2 506.19573974609375 MULTI HCD FTMS 0 0 0 11585 556342.25 0.8007730046426338 2 -0.0523529052734375 2 2 Carbamidomethyl (C) _HALCTC(Carbamidomethyl (C))C(Carbamidomethyl (C))F_ ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1|CHFR 5.760428011301431 0.5334459684533844 1 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 22.905 0 0 2.267 0 0 0 584.1465619555823 584.1465619555823 0.14014361800122188 0 0 0 0 0.2614393726401688 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.267 - 108 NaN NaN 264041.6 NaN 8849 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11588 54.188 NaN 385990 35 0 26887 0.261 + 18777 NADAIVVKL 9 73 471.7845208438265 941.554488754453 2 471.7846984863281 MULTI HCD FTMS 0 0 0 11585 155654.546875 0.13661058705510976 6 -0.1602325439453125 3 Unmodified _NADAIVVKL_ ENSG00000197157|ENST00000354725|SND1 75.5705956163825 0.007285660612518157 1 {[QG]|[NA]}DA{I|L}VVK{I|L} 9 0 + 100.61 0 0 10.685 10.685 99.675 0 0 0 27.818408358797754 16.478174818886373 16.478174818886373 84.82570335676726 0 2.610924374808178 1.5228787452803376 0.28872548999643577 1.079689690656103 + + {[QG]|[NA]}DA{I|L}VVK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L} 10.685;1.6759 +;- + 162 NaN NaN 137693.8 NaN 8850 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11589 54.192 NaN 161700 35 0 16451 0.261 + 24107 RYALQMEQL 9 55 576.2972215864361 1150.579890239672 2 576.2971801757812 MULTI HCD FTMS 0 0 0 11585 70756.9609375 0.4034295892193693 3 -0.06866073608398438 4 Unmodified _RYALQMEQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 55.23464941255904 0.024247875903973527 1 [YR]A{I|L}QMEQ{I|L} 9 0 + 66.454 0 0 5.7757 5.7757 86.495 0 0 0 4.762036441594191 58.03756741013514 4.762036441594191 8.52588845858618 0 2.138210492164445 0 0 0 + + [YR]A{I|L}QMEQ{I|L};[YR]AEQ{I|L}MQ{I|L};[YR]A{I|L}[AG]MEQ{I|L};[YR]A{I|L}QME[AG]{I|L};[YR]A{I|L}QEMQ{I|L};{[QN]|[E{I|L}]|[KN]}[YN]Q{I|L}MQ{I|L};[YR]AEQ{I|L}M[AG]{I|L};[YR]AE[AG]{I|L}MQ{I|L};[YR]A{I|L}[AG]ME[AG]{I|L};[YR]A{I|L}[AG]EMQ{I|L} 5.7757;5.0347;4.9754;4.9754;4.7757;4.4122;4.2344;4.2344;4.1789;3.9754 +;-;-;-;-;-;-;-;-;- + 363 NaN NaN 118006.5 NaN 8851 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11590 54.195 NaN 295700 35 0 14290 0.261 -1 FPDRIMNTF 9 83 578.7763288981632 1155.5381048631264 2 578.7761840820312 MULTI HCD FTMS 0 0 0 11585 90648.25 0.1227900184958999 30 -0.6631584167480469 5 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 34.93206674587334 0.08860942999206235 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[R{I|L}]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 -1 + 44.024 0 0 3.8098 3.8098 84.549 0 0 0 15.492268421541837 21.43175948177209 15.492268421541837 9.208187539523749 0 0.3494850021680094 1.6989700043360187 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[R{I|L}]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[R{I|L}]{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[QT]TR[EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F};{[WN]|[YH]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]NT{M(Oxidation (M))|F};[C(Carbamidomethyl (C))S][VP]V{[RE]|[WV]}Y{M(Oxidation (M))|F} 3.8098;3.013;1.1564;0.78775;0.50171 +;-;-;-;- + 324 NaN NaN 129768.8 NaN 8852 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11591 54.198 NaN 261570 35 0 24154 0.261 -1 VPAEELVEM 9 66 516.7495181166456 NaN 0 516.7492065429688 PEAK HCD FTMS 0 0 0 11585 58012.8359375 0.6568231335985519 1 -0.02618408203125 6 Oxidation (M) _VPAEELVEM(Oxidation (M))_ ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12 25.399314129420986 0.1511568710901456 1 VE 2 -1 29.776 0 0 2.8867 0 0 638.3282160655193 162.02329431705314 800.3515103825724 0 0 0 0 0 1.5 0 0.3807196863200844 0 VE 2.8867 + + 38 + NaN NaN 126645.8 NaN 8853 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11592 54.202 NaN 442760 35 0 45941 0.261 + 18337 MPHDLITQL 9 90 542.2786251806476 1082.5426974280952 2 542.2783813476562 MULTI HCD FTMS 0 0 0 11585 145265.671875 0.553201654284839 -7 0.206756591796875 7 Oxidation (M) _M(Oxidation (M))PHDLITQL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 47.748688679222035 0.03472022231463587 1 {[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L} 9 5 + 52.898 0 0 4.8864 4.8864 83.389 0 0 0 0.9151498112134959 36.29615981915208 0.9151498112134959 4.771212547196626 0 1.1549471895720984 0 0.8494850021680094 0 {[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L};{[QN]|[E{I|L}]|[KN]}G[Y{M(Oxidation (M))|F}]{I|L}TQ{I|L};{[QN]|[E{I|L}]|[KN]}HV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TQ{I|L};{[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}T[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T[QA]YTQ{I|L};{[QN]|[E{I|L}]|[KN]}G[Y{M(Oxidation (M))|F}]{I|L}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}HV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[AG]{I|L};[NP][PA]V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TQ{I|L};{[QN]|[E{I|L}]|[KN]}HV[{I|L}A]C(Carbamidomethyl (C))E{I|L};{[ET]|[MV]}[RH]{[WN]|[YH]}Q{I|L} 4.8864;4.4457;4.3107;4.0358;3.7157;3.5951;3.4601;2.6961;2.4384;2.0715 -;-;-;-;-;-;-;-;-;- 821 NaN NaN 149622.3 NaN 8854 2736 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11594 54.206 NaN 589670 35 0 124840 0.327 + 29493 TYVPNIDRI 9 88 545.798129100402 1089.5817052676039 2 545.7987060546875 MULTI HCD FTMS 0 0 0 11593 165664.3125 0.7473132183209277 -1 0.02618408203125 1 Unmodified _TYVPNIDRI_ ENSG00000129422|ENST00000693296|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;nc|ENSG00000129422|Q9ULD2-5|MTUS1 22.65808497894818 0.16459551161911185 1 [YT]V[KQ][QP]{I|L}N 9 6 + 43.469 0 0 3.9895 3.9895 86.844 0 0 0 6.0221174751754205 32.04940914231635 6.0221174751754205 14.125605221998594 0 1 1.6989700043360187 0.25 0.28872548999643577 [YT]V[KQ][QP]{I|L}N;[YT]VKK[HD]S{I|L};[YT]V[KA]{[HG]|PP}{I|L}{[DS]|[MA]|[CV]|TT} 3.9895;2.6931;1.9385 -;-;- 301 NaN NaN 167447.4 NaN 8855 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11595 54.211 NaN 819440 35 0 166740 0.261 + 24071 RYAEAVQLL 9 77 531.800988424696 1061.587423916192 2 531.8013305664062 MULTI HCD FTMS 0 0 0 11593 294238.84375 0.2928878800975575 -5 0.15096282958984375 2 Unmodified _RYAEAVQLL_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 47.594388314883695 0.03493607795751234 1 QVAEC(Carbamidomethyl (C))V{I|L} 7 5 62.898 0 0 5.9249 0 0 244.17860610175939 0 244.17860610175939 0 49.40359493906605 0 0 0 1.8252574989159953 0 0.3494850021680094 0.6237125054200234 QVAEC(Carbamidomethyl (C))V{I|L} 5.9249 - 768 NaN NaN 205948.4 NaN 8856 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11596 54.214 NaN 252090 35 0 32512 0.261 + 6369 FPGEAERVAF 10 75 561.7829852016356 1121.551417470071 2 561.782958984375 MULTI HCD FTMS 0 0 0 11593 78721.703125 0.3316911135397053 -10 0.2920646667480469 3 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 47.7319792270244 0.08603782309361356 1 {M(Oxidation (M))|F}PGEAE[RV]A{M(Oxidation (M))|F} 10 0 + 79.73 0 0 7.1089 7.1089 94.22 0 0 0 72.74018161280694 16.53212513775344 16.53212513775344 35.7234182151732 0 1.7302046884880937 0 0.4247425010840047 0.3054621874040891 + + {M(Oxidation (M))|F}PGEAE[RV]A{M(Oxidation (M))|F};{M(Oxidation (M))|F}PEEQ[RV]A{M(Oxidation (M))|F} 7.1089;3.9237 +;- + 168 + NaN NaN 125055.8 NaN 8857 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11597 54.218 NaN 353170 35 0 160820 0.261 + 8559 HASLSEYVL 9 45 509.76392059353134 1017.5132882538627 2 509.763916015625 MULTI HCD FTMS 0 0 0 11593 130035.78125 0.2733829185319698 -6 0.17388916015625 4 Unmodified _HASLSEYVL_ ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-2|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1 15.847184025352803 0.2234401846867398 1 YV{I|L} 3 6 35.005 0 0 3.4403 0 0 624.2877674787125 0 624.2877674787125 0 19.5205343810445 0 0 0 0.8807196863200843 0 0 0 + YV{I|L} 3.4403 + + 24 NaN NaN 155813.8 NaN 8858 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11598 54.221 NaN 188840 35 0 17554 0.261 -1 LYANMFERL 9 70 586.7918096295268 1171.5690663258536 2 586.7737426757812 MULTI HCD FTMS 0 0 0 11593 51962.40625 0.13624114365420578 8 -0.20915985107421875 5 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 32.037481411007896 0.10189719824197178 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 -1 + 71.582 0 0 6.1099 6.1099 88.14 0 0 0 50.66447164506137 9.009461452434238 9.009461452434238 9.208187539523749 0 1.2302046884880937 2 0.5 0 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{[WT]|[RM]}[YN]E{I|L};{I|L}Y{[C(Carbamidomethyl (C))G]|[NC]}[YV]ER{I|L};{I|L}{M(Oxidation (M))|F}SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}[YN]E{I|L} 6.1099;5.324;3.5264;3.3572;2.841;2.7404;0.88361 +;-;-;-;-;-;- + 284 + NaN NaN 125961 NaN 8859 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11599 54.224 NaN 221930 35 0 33581 0.261 -1 LPDMVVSHL 9 60 513.7679631974995 1025.521373461799 2 513.7681884765625 MULTI HCD FTMS 0 0 0 11593 70751.09375 0.04374813628864172 59 -1.4427986145019531 6 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 19.256988751693697 0.19398022840297344 1 {I|L}P 2 -1 25.969 0 0 2.5323 0 0 0 812.3636538899626 812.3636538899626 7.429928190999391 0 0 0 0 0.5 0 0 0 {I|L}P 2.5323 + + 36 + NaN NaN 127146.6 NaN 8860 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11600 54.228 NaN 251020 35 0 15918 0.261 + 7593 FYHKYFNYL 9 58 647.8164508336723 1293.6183487341445 2 647.81640625 MULTI HCD FTMS 0 0 0 11593 78518.9296875 0.09908119418315933 27 -0.5780830383300781 7 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 55.50274090549119 0.023872834264864425 1 KY{M(Oxidation (M))|F}NY{I|L} 6 3 45.214 0 0 3.4952 0 0 447.19075209785314 0 447.19075209785314 0 24.702161906808247 0 0 0 1.3494850021680094 0 0 0.805462187404089 + KY{M(Oxidation (M))|F}NY{I|L} 3.4952 + + 78 NaN NaN 121406.8 NaN 8861 2737 11593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11602 54.233 NaN 2476600 35 0 223430 0.327 + 9756 HYILHNSFF 9 105 589.2930832030781 1176.5716134729562 2 589.2932739257812 MULTI HCD FTMS 0 0 0 11601 1434462.25 0.9566514450935477 -1 0.0261688232421875 1 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 198.2503983107462 1.949454451977364E-17 1 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 104.06 0 0 8.844 8.844 90.347 0 0 0 5.355151197026032 5.355151197026032 5.355151197026032 5.355151197026032 0 2.278659694992122 1.5228787452803376 0.9247425010840047 0.5189301784845296 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}NHS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}NSH{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}GGHS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}GGSH{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.844;8.3889;8.0614;7.7359;7.5993;7.0973;6.9533;6.6642;6.542;6.3147 +;+;-;-;-;-;-;-;-;- + 3914 NaN NaN 460865.2 NaN 8862 2738 11601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11603 54.237 NaN 109970 35 0 9916 0.261 + 5361 FGEYDEWSLV 10 43 622.7771965040741 1243.5398400749482 2 622.7777709960938 MULTI HCD FTMS 0 0 0 11601 40007.953125 0.7240889374912379 -8 0.22958755493164062 2 Unmodified _FGEYDEWSLV_ REV__ENSG00000167207|ENST00000647318|NOD2;REV__ENST00000526417.6_1_16:50727539-50743880:+|nuORF;REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF;REV__nc|ENSG00000167207|Q9HC29-3|NOD2;REV__nc|ENSG00000167207|Q9HC29|NOD2 1.844237919475145 0.46554186016084764 1 W 1 -1 13.099 0 0 1.0534 0 0 1039.4491245981887 0 1039.4491245981887 0 -4.859856381998782 -4.859856381998782 0 0 0 0 0 0 W 1.0534 + + 9 + NaN NaN 105230.3 NaN 8863 2738 11601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11604 54.241 NaN 94460 35 0 9298 0.263 + 1933 DAEHGAWAL 9 45 485.2247423543493 968.4349317754986 2 485.2248840332031 MULTI HCD FTMS 0 0 0 11601 23630.6953125 0.46072325103875744 -3 0.08189773559570312 3 Unmodified _DAEHGAWAL_ ENSG00000157613|ENST00000621158|CREB3L1 11.640296217721598 0.25978676193971967 1 WA{I|L} 3 6 35.005 0 0 3.6146 0 0 580.2243519513687 0 580.2243519513687 0 30.400990676322905 0 0 0 0.8807196863200843 0 0 0 + WA{I|L} 3.6146 + + 51 NaN NaN 96587.2 NaN 8864 2738 11601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11605 54.244 NaN 219040 35 0 55269 0.261 -1 FLIISMCLLF 10 58 405.88870973972695 1214.6442998193809 3 405.8887023925781 MULTI HCD FTMS 0 0 0 11601 18298.1796875 0.07619187872002607 -9 0.2591094970703125 4 Oxidation (M) _FLIISM(Oxidation (M))CLLF_ ENSG00000188175|ENST00000394468|HEPACAM2;nc|ENSG00000188175|A8MVW5-2|HEPACAM2;nc|ENSG00000188175|A8MVW5-3|HEPACAM2 14.405379775768559 0.37636895476610294 1 {I|L}{[{M(Oxidation (M))|F}D]|MM}{[QN]|[E{I|L}]|[KN]} 5 -1 15.726 0 0 1.2947 0 0 579.3137573815827 0 579.3137573815827 0 1.1215060599645454 0 0 0 0.9247425010840047 0 0 0 {I|L}{[{M(Oxidation (M))|F}D]|MM}{[QN]|[E{I|L}]|[KN]} 1.2947 - 30 NaN NaN 115273.6 NaN 8865 2738 11601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11607 54.249 NaN 1095900 35 0 143900 0.327 + 26693 SYAPPTDSF 9 86 492.71895487662374 983.4233568200475 2 492.7192687988281 MULTI HCD FTMS 0 0 0 11606 516342.6875 0.8371216251105997 2 -0.05877685546875 1 Unmodified _SYAPPTDSF_ ENSG00000118515|ENST00000367858|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 172.90653553480564 2.2447970467336844E-09 1 {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F} 9 0 + 91.749 0 0 9.3296 9.3296 91.098 0 0 0 3.748162098248997 68.94061491126763 3.748162098248997 5.981362441963327 0 3.0669015600442577 0 1.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}APPESS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}APEPSS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AEPPSS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAPTDS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAPESS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAEPSS{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}TPPSS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[CA]|SS}PPSS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{[WT]|[RM]}D{I|L} 9.3296;8.7214;8.3342;6.4361;5.8905;5.2823;4.8951;4.0139;2.997;2.3461 +;-;-;-;-;-;-;-;-;- + 675 NaN NaN 242715.9 NaN 8866 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11608 54.253 NaN 3095700 35 0 203600 0.245 + 6214 FPEQIAEKL 9 121 537.7949039085173 1073.5752548838345 2 537.7948608398438 MULTI HCD FTMS 0 0 0 11606 552361.4375 0.9786562867641848 -2 0.042476654052734375 2 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 62.86856922530385 0.01356854487378719 1 {M(Oxidation (M))|F}PEQ{I|L}AEK{I|L} 9 0 + 42.132 0 0 3.9244 3.9244 80.687 0 0 0 4.013626026884289 1.3730567421482789 1.3730567421482789 1.7949169632077044 0 1.8486198691406326 0 0.49164406112826264 0.7159784756539757 + + {M(Oxidation (M))|F}PEQ{I|L}AEK{I|L};[EP]Q{I|L}{M(Oxidation (M))|F}AEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}AEK{I|L};[EP]Q{I|L}{M(Oxidation (M))|F}AK{I|L}E;[EP]{M(Oxidation (M))|F}Q{I|L}AK{I|L}E;{M(Oxidation (M))|F}PE[AG]{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}AG{I|L}AEK{I|L};[EP]Q{I|L}{M(Oxidation (M))|F}AKE{I|L};[EP]{M(Oxidation (M))|F}AG{I|L}AK{I|L}E;[EP]{M(Oxidation (M))|F}Q{I|L}AKE{I|L} 3.9244;3.7572;3.5969;3.5445;3.3841;3.0667;3.041;2.9873;2.8282;2.8269 +;-;-;-;-;-;-;-;-;- + 2882 + NaN NaN 502434.5 NaN 8867 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11609 54.257 NaN 395490 35 0 47793 0.261 + 877 AYAIIKEEL 9 61 525.2974074522662 1048.5802619713322 2 525.2977294921875 MULTI HCD FTMS 0 0 0 11606 215648.21875 0.06543968953746822 11 -0.2665672302246094 3 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 85.64151623876279 0.004640175941193596 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 9 0 + 85.372 0 0 8.1417 8.1417 93.43 0 0 0 19.068496217386084 69.17403451429223 19.068496217386084 12.781512503836439 0 2.1549471895720984 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}KEE{I|L} 8.1417;6.9227 +;- + 253 NaN NaN 147588.6 NaN 8868 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11610 54.26 NaN 302300 35 0 53257 0.261 -1 WCPHWVWERRM 11 68 553.5861808816371 1657.7367132451113 3 553.5867919921875 MULTI HCD FTMS 0 0 0 11606 82897.5234375 0.72408402633645 4 -0.10778427124023438 4 Carbamidomethyl (C),Oxidation (M) _WC(Carbamidomethyl (C))PHWVWERRM(Oxidation (M))_ ENST00000449742.6_1_6:30126994-30128439:-|nuORF 0 0.41892066650488113 1 AA{M(Oxidation (M))|F}TE[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 63.365 0 0 3.8224 0 0 422.17988784004064 0 422.17988784004064 0 42.65153777800478 0 0 0 1.4247425010840047 0 0.4247425010840047 0 AA{M(Oxidation (M))|F}TE[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8224 - 163 NaN NaN 129687.2 NaN 8869 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11611 54.263 NaN 251710 35 0 48443 0.261 + -1 LMEECMAL 8 59 498.71314497055334 995.4117370079067 2 498.71331787109375 MULTI HCD FTMS 0 0 0 11606 88309.2109375 0.3741832725505625 5 -0.14056015014648438 5 Carbamidomethyl (C) _LMEEC(Carbamidomethyl (C))MAL_ REV__ENSG00000102032|ENST00000393700|RENBP;REV__ENST00000457282.5_1_X:153200741-153205574:-|nuORF;REV__nc|ENSG00000102032|P51606-3|RENBP 9.347437153973935 0.5250182646323369 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4671 0 0 830.3329233866161 0 830.3329233866161 0 7.525749891599531 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4671 + + 30 + NaN NaN 121258.3 NaN 8870 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11612 54.267 NaN 292270 35 0 42518 0.261 + 3561 EITPPVVLR 9 55 512.3133117833145 1022.612070633429 2 512.3135986328125 MULTI HCD FTMS 0 0 0 11606 76320.0546875 0.7798250771964774 -4 0.09820556640625 6 Unmodified _EITPPVVLR_ ENSG00000181163|ENST00000296930|NPM1;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-2|NPM1;nc|ENSG00000181163|P06748-3|NPM1 34.40172386719151 0.0910440009062557 1 {[QN]|[E{I|L}]|[KN]}TP[VP]V{I|L}R 9 0 + 56.929 0 0 5.567 5.567 92.256 0 0 0 45.4580272014703 12.98332479720628 12.98332479720628 56.928571858695136 0 0.805462187404089 1.6989700043360187 0 0 + + {[QN]|[E{I|L}]|[KN]}TP[VP]V{I|L}R 5.567 + + 104 + NaN NaN 149579.3 NaN 8871 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11613 54.27 NaN 402350 35 0 23427 0.261 + 28623 TQTLVREYF 9 85 578.80322237677 1155.59189182034 2 578.8033447265625 MULTI HCD FTMS 0 0 0 11606 90061.046875 0.5179939292001232 -2 0.042476654052734375 7 Unmodified _TQTLVREYF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 70.92866715596459 0.008787713425443074 1 [QT]T{I|L}VREY{M(Oxidation (M))|F} 9 0 + 64.481 0 0 5.5799 5.5799 90.671 0 0 0 56.80527860537791 16.47817481888638 16.47817481888638 23.759760357474335 0 2.312087860221073 0 0.4247425010840047 0 + + [QT]T{I|L}VREY{M(Oxidation (M))|F};[QT]T[WP]V{I|L}T[NP];[QT]T{I|L}V[WP]T[NP];[QT]T{I|L}{[WT]|[RM]}[VP][NP];[KT][DV]VREY{M(Oxidation (M))|F};[QT]T[WP]V[VP][QT];[KT][DV]V[WP]T[NP];[QT]T{I|L}[{I|L}P]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[NP] 5.5799;3.5239;2.7887;2.6143;2.5629;2.3991;2.0547;1.7314 +;-;-;-;-;-;-;- + 342 + NaN NaN 155754.2 NaN 8872 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11614 54.273 NaN 160000 35 0 16417 0.261 + 16720 LYANMFERL 9 67 586.7918096295268 1171.5690663258536 2 586.7926025390625 MULTI HCD FTMS 0 0 0 11606 33765.09765625 0.0885293013212498 10 -0.2375030517578125 8 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 41.95555342248728 0.056367691549927025 1 [Y{I|L}]A{M(Oxidation (M))|F} 4 5 37.167 0 0 3.1724 0 0 0 674.3242292499348 674.3242292499348 9.05787502935297 0 0 0 0 1 2 0 0 [Y{I|L}]A{M(Oxidation (M))|F} 3.1724 - 168 NaN NaN 115656.2 NaN 8873 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11615 54.277 NaN 230560 35 0 25732 0.262 + 26781 SYGSVFKAI 9 66 486.263501361269 970.512449789338 2 486.263671875 MULTI HCD FTMS 0 0 0 11606 45121.265625 0.45764837223838134 -2 0.042476654052734375 9 Unmodified _SYGSVFKAI_ ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3 61.60191391372663 0.015340508911304802 1 {[{M(Oxidation (M))|F}C]|[YS]}GSV{M(Oxidation (M))|F}KA{I|L} 9 0 + 47.947 0 0 4.9404 4.9404 89.334 0 0 0 5.6424927368725974 31.74919076937762 5.6424927368725974 21.25447181216778 0 2.1861818737241734 0 0.3054621874040891 0 + + {[{M(Oxidation (M))|F}C]|[YS]}GSV{M(Oxidation (M))|F}KA{I|L};[DP]E[W{I|L}]KA{I|L} 4.9404;2.7504 +;- + 226 NaN NaN 120196.8 NaN 8874 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11616 54.28 NaN 166470 35 0 13596 0.261 -1 YNKCKRKN 8 75 555.7946823975724 1109.5748118619447 2 555.7947998046875 MULTI HCD FTMS 0 0 0 11606 35264.30078125 0.31938276149950245 6 -0.16668319702148438 10 Carbamidomethyl (C) _YNKC(Carbamidomethyl (C))KRKN_ ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF;RWDD2B|p.H196Q|1|0.1|ENSG00000156253|chr21:29007898-29007898|A/T|missense_variant 5.230669730166228 0.5342319408533849 1 QS{I|L}HMS[Y{I|L}] 8 -1 26.38 0 0 2.3775 0 0 132.0953185693026 0 132.0953185693026 0 13.192672072328902 0 0 0 0 0 0.3807196863200844 0 QS{I|L}HMS[Y{I|L}] 2.3775 - 347 + NaN NaN 106740.8 NaN 8875 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11617 54.283 NaN 56327 35 0 6313.5 0.262 -1 0 36 467.10200092631936 NaN 0 467.10162353515625 PEAK HCD FTMS 0 0 0 11606 44472.015625 0.5501660041705938 -12 0.33454132080078125 11 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94700.2 NaN 8876 2739 11606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11619 54.288 NaN 301110 35 0 59881 0.326 + 32352 VYVKDLSSF 9 70 529.2814612727395 1056.548369612279 2 529.2823486328125 MULTI HCD FTMS 0 0 0 11618 116351.3671875 0.5475622976786452 1 -0.01956939697265625 1 Unmodified _VYVKDLSSF_ ENSG00000101350|ENST00000375712|KIF3B 53.40400417844725 0.026808823219830042 1 VYVK{I|L}DSS{M(Oxidation (M))|F} 9 2 + 89.792 0 0 8.4986 8.4986 95.099 0 0 0 85.81215024481537 16.478174818886373 16.478174818886373 18.48258770979733 0 2.548455006504028 1.6989700043360187 0.3494850021680094 0 VYVK{I|L}DSS{M(Oxidation (M))|F};[YV]VK{I|L}DSS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}[Q{I|L}]VM{I|L} 8.4986;6.7492;1.424 -;-;- 190 + NaN NaN 138362.2 NaN 8877 2740 11618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11620 54.293 NaN 450780 35 0 81384 0.261 -1 TPCSCLHF 8 79 503.71009976426336 1005.4056465953267 2 503.7103576660156 MULTI HCD FTMS 0 0 0 11618 44071.578125 0.48612590325174504 1 -0.01956939697265625 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))TPCSC(Carbamidomethyl (C))LHF_ ENST00000577564.1_1_18:19244224-19244281:-|nuORF 8.593279151180031 0.5292430274356741 1 {[{M(Oxidation (M))|F}C]|[YS]}A{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{M(Oxidation (M))|F} 9 -1 {[{M(Oxidation (M))|F}C]|[YS]} + + 27.522 2.8432 1.1368 2.7374 2.7374 59.124 0 0 0 0 13.633316075983757 0 0 0 1.055462187404089 0 0.2742275032520141 0 {[{M(Oxidation (M))|F}C]|[YS]}A{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{M(Oxidation (M))|F} 2.7374 - 221 + NaN NaN 157314.3 NaN 8878 2740 11618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11621 54.296 NaN 138540 35 0 18451 0.261 + 10360 ILYRPIQKL 9 62 572.3659738446571 1142.7173947561141 2 572.3662109375 MULTI HCD FTMS 0 0 0 11618 40762 0.1534887765544783 14 -0.2816162109375 3 Unmodified _ILYRPIQKL_ REV__ENSG00000162688|ENST00000361915|AGL;REV__nc|ENSG00000162688|P35573-2|AGL;REV__nc|ENSG00000162688|P35573-3|AGL 19.256988751693697 0.19398022840297344 1 {I|L}QK{I|L} 4 -1 36.23 0 0 3.1705 0 0 642.3860717021252 0 642.3860717021252 0 21.281446971601312 0 0 0 0.4247425010840047 0 0 0.3054621874040891 {I|L}QK{I|L} 3.1705 + + 40 NaN NaN 103957.5 NaN 8879 2740 11618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11622 54.299 NaN 104520 35 0 23928 0.262 + 30066 VFTGVVTKL 9 49 482.2969622695427 962.5793716058854 2 482.2971496582031 MULTI HCD FTMS 0 0 0 11618 47144.546875 0.8923855411851799 1 -0.01956939697265625 4 Unmodified _VFTGVVTKL_ ENSG00000060339|ENST00000265872|CCAR1;nc|ENSG00000060339|Q8IX12-2|CCAR1 15.248480904072842 0.22861284681709862 1 RTD{I|L} 4 7 33.672 0 0 3.4981 0 0 459.306444236525 0 459.306444236525 0 26.682437647924218 0 0 0 1 0 0 0 RTD{I|L} 3.4981 - 17 NaN NaN 97708.9 NaN 8880 2740 11618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11623 54.303 NaN 119940 35 0 30366 0.261 + 3757 ENQIHRGGQYF 11 41 450.21776029526575 1347.6314514859973 3 450.2178039550781 MULTI HCD FTMS 0 0 0 11618 21860.345703125 0.5374042587108249 1 -0.01956939697265625 5 Unmodified _ENQIHRGGQYF_ ENSG00000159164|ENST00000369146|SV2A;nc|ENSG00000159164|Q7L0J3-2|SV2A 2.6312355333042263 0.4073809613003177 1 {M(Oxidation (M))|F} 1 10 21.99 0 0 1.6317 0 0 1182.552241136191 0 1182.552241136191 0 18.89075625191822 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6317 + + 4 + NaN NaN 90509.7 NaN 8881 2740 11618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11625 54.308 NaN 4241900 35 0 333850 0.327 + 28347 TPDEIDHVF 9 123 536.7507803122957 1071.4870076913912 2 536.7511596679688 MULTI HCD FTMS 0 0 0 11624 2559413 0.799315117156971 2 -0.049007415771484375 1 Unmodified _TPDEIDHVF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 257.829251106665 2.2101964205718886E-41 1 TPDE{I|L}DHV{M(Oxidation (M))|F} 9 0 + 115.68 0 0 10.796 10.796 90.45 0 0 0 2.4978624828667932 2.4978624828667932 2.4978624828667932 2.4978624828667932 0 3.1861818737241734 1.5228787452803376 1.6298545532927078 0 + + TPDE{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}DHV{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}PE{I|L}DHV{M(Oxidation (M))|F};[DP]TE{I|L}DHV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT{I|L}DHV{M(Oxidation (M))|F};[DP]ET{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}{[WN]|[YH]}PT;[TP]DE[{M(Oxidation (M))|F}V]VHE;[TP]DT[KS][YN]{M(Oxidation (M))|F};[HV]DEEPTV{M(Oxidation (M))|F} 10.796;10.563;7.8456;7.8238;7.0976;6.8905;5.8433;5.5048;5.49;4.5611 +;+;-;-;-;-;-;-;-;- + 7765 + NaN NaN 660874 NaN 8882 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11626 54.312 NaN 965820 35 0 155960 0.261 + 659 APLEDEATL 9 81 479.73987853886996 957.4652041445399 2 479.7400817871094 MULTI HCD FTMS 0 0 0 11624 665094.0625 0.1549202617060062 8 -0.1787261962890625 2 Unmodified _APLEDEATL_ ENSG00000149806|ENST00000529639|FAU 104.79918948944588 0.003791450360204016 1 [PA]{I|L}EDEAT{I|L} 9 0 + 89.307 0 0 9.3274 9.3274 94.624 0 0 0 11.303337684950066 16.478174818886373 11.303337684950066 11.303337684950066 0 1.3807196863200843 1.6989700043360187 0.9916440611282626 0 + + [PA]{I|L}EDEAT{I|L};{[QN]|[E{I|L}]|[KN]}APDEAT{I|L};[PA]{I|L}DEEAT{I|L};[PA]{I|L}EDE[{I|L}T]A;{[CP]|[EA]}{I|L}PDEAT{I|L};{[QN]|[E{I|L}]|[KN]}[PG]EEAT{I|L};[{I|L}T]AEDE{I|L}PA;[PA]{I|L}ED[VS]D{I|L};[PA]{I|L}EDEV[VS];[PA]{I|L}EDD[VS]{I|L} 9.3274;8.1469;8.1171;6.4492;6.3724;6.1053;5.9933;5.6866;5.6319;5.5027 +;-;-;-;-;-;-;-;-;- + 1074 NaN NaN 233911.6 NaN 8883 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11627 54.316 NaN 2685800 35 0 166930 0.261 + 6215 FPEQIAEKL 9 123 537.7949039085173 1073.5752548838345 2 537.7947998046875 MULTI HCD FTMS 0 0 0 11624 564408 1 0 0 3 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 74.7717668357584 0.007544148658426945 1 {I|L}MEQ{I|L}AE 7 4 61.978 0 0 5.773 0 0 0 256.16681848697505 256.16681848697505 23.947594470972447 0 0 0 0 2.2198565171985374 1.2218487496163564 1.076348700266608 0.28872548999643577 {I|L}MEQ{I|L}AE 5.773 - 3534 + NaN NaN 492899.5 NaN 8884 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11628 54.319 NaN 1035800 35 0 133140 0.261 + 34296 YPDSHLPTL 9 98 521.7637531121 1041.5129532909998 2 521.7640380859375 MULTI HCD FTMS 0 0 0 11624 510911.09375 0.8392564286258419 3 -0.08178329467773438 4 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 164.5152109175784 6.8106583686994766E-09 1 YPDSH{I|L}PT{I|L} 9 0 + 94.073 0 0 9.0324 9.0324 96.349 0 0 0 65.86385412723621 17.23628654999466 17.23628654999466 22.7083261065104 0 2.443672679568534 1.3010299956639813 1.9336068845642203 0 + + YPDSH{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSH{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSH{I|L}TP{I|L};[DP]YSH{I|L}PT{I|L};[DP]YSH{I|L}TP{I|L};Y{[ET]|[MV]}RYPT{I|L};[TP]{I|L}{I|L}[HS]DPY;[{I|L}T]P{I|L}[HS]DPY 9.0324;6.8521;5.9085;5.018;4.0744;3.1041;2.9809;0.18922 +;+;-;-;-;-;-;- + 535 + NaN NaN 240391.6 NaN 8885 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11629 54.322 NaN 635420 35 0 88946 0.261 + 17945 MITDLEERL 9 86 568.2866526770156 1134.558752420831 2 568.2868041992188 MULTI HCD FTMS 0 0 0 11624 260088.921875 0.19100134710887945 12 -0.24996185302734375 5 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 114.18643581695662 0.002258955990713129 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 110.77 0 0 9.763 9.763 89.534 0 0 0 21.611592866953174 86.32950303671053 21.611592866953174 1.7216751192405297 0 2.9247425010840047 2 1.593569022618561 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}ERE{I|L};{M(Oxidation (M))|F}{I|L}TEVEER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{M(Oxidation (M))|F}{I|L}TEVERE{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DT{I|L}E;{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]VETE{I|L} 9.763;9.6112;8.5898;7.5247;6.805;6.288;5.6151;5.5683;4.5937;4.3784 +;-;-;+;-;-;-;-;-;- + 1372 NaN NaN 181161 NaN 8886 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11630 54.326 NaN 1340900 35 0 387910 0.261 -1 RRMYNLFWRHF 11 82 547.9443518901178 1640.811226270553 3 547.9439697265625 MULTI HCD FTMS 0 0 0 11624 260842.046875 0.6573410957893275 -1 0.01956939697265625 6 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 1.3296431237094175 0.4130893034510334 1 PYNQQH{I|L}Y{M(Oxidation (M))|F} 9 -1 92.177 0 0 5.6178 0 0 432.24749894779944 0 432.24749894779944 0 67.13560197082276 0 0 0 3.004432191740108 0 0 0.805462187404089 PYNQQH{I|L}Y{M(Oxidation (M))|F} 5.6178 - 2259 NaN NaN 295517.4 NaN 8887 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11631 54.329 NaN 542090 35 0 63895 0.261 + 27350 SYSDPPLKF 9 69 527.2665909786404 NaN 0 527.266845703125 PEAK HCD FTMS 0 0 0 11624 166412.359375 0.7930837149924105 -1 0.01956939697265625 7 Unmodified _SYSDPPLKF_ ENSG00000169813|ENST00000682386|HNRNPF 92.65332237495696 6.141094495909048E-05 1 SDP[{I|L}P]K 6 3 38.465 0 0 3.6546 0 0 250.0953026595061 162.05660111909643 412.15190377860256 0 0 0 0 0 2.579689690656103 0 1.1989700043360187 0 + SDP[{I|L}P]K 3.6546 + + 115 NaN NaN 158671.3 NaN 8888 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11632 54.332 NaN 156960 35 0 19683 0.261 -1 RFDEAYIYM 9 43 612.2741005920941 1222.533648250988 2 612.2742309570312 MULTI HCD FTMS 0 0 0 11624 51765.75 0.36998949111770507 12 -0.24996185302734375 8 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 12.240655878213236 0.2545997876781172 1 Y{I|L}Y{M(Oxidation (M))|F} 4 -1 36.52 0 0 2.9872 0 0 618.275682517775 0 618.275682517775 0 32.54050683657031 0 0 0 0.8807196863200843 0 0 0 Y{I|L}Y{M(Oxidation (M))|F} 2.9872 + + 24 NaN NaN 103372.5 NaN 8889 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11633 54.336 NaN 139430 35 0 16079 0.261 + 35659 YYINKISSTL 10 59 601.3265629036406 1200.638572874081 2 601.32666015625 MULTI HCD FTMS 0 0 0 11624 59951.91015625 0.5661710933771839 2 -0.049007415771484375 9 Unmodified _YYINKISSTL_ ENSG00000163463|ENST00000295682|KRTCAP2;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2 23.789781309258295 0.28859042913526417 1 YY{I|L}N 4 6 41.198 0 0 3.4313 0 0 0 644.3659151666624 644.3659151666624 16.760912590556813 0 0 0 0 0.8494850021680094 2 0 0 + YY{I|L}N 3.4313 + + 41 + NaN NaN 112136.3 NaN 8890 2741 11624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11635 54.34 NaN 391140 35 0 22778 0.327 + -1 KDCMHCAF 8 74 506.19536184660836 1010.3761707600167 2 506.19580078125 MULTI HCD FTMS 0 0 0 11634 76278.2265625 0.10979131042674664 8 -0.17499542236328125 1 Carbamidomethyl (C) _KDC(Carbamidomethyl (C))MHCAF_ REV__ENSG00000198081|ENST00000651870|ZBTB14 2.8892196856762586 0.5377058178582064 1 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 19.666 0 0 1.9464 0 0 0 584.1454161235657 584.1454161235657 0.2018122933698443 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F} 1.9464 - 57 NaN NaN 146145.7 NaN 8891 2742 11634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11636 54.345 NaN 134200 35 0 5542.6 0.261 + 29318 TYNKVLHFF 9 61 584.8110454878483 1167.6075380424966 2 584.8112182617188 MULTI HCD FTMS 0 0 0 11634 53036.73046875 0.7120648323207107 1 -0.01621246337890625 2 Unmodified _TYNKVLHFF_ ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant 57.72198328787511 0.020768266150574023 1 [YT]NKV{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 65.771 0 0 5.633 5.633 87.334 0 0 0 25.41686396981467 9.137342758552691 9.137342758552691 9.208187539523749 0 1.7689301784845295 2 0 0 + + [YT]NKV{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]GGKV{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]NA{I|L}V[KT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]TKV{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]GGA{I|L}V[KT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{M(Oxidation (M))|F}]RR{M(Oxidation (M))|F}S[RH] 5.633;4.8444;2.8743;2.3296;2.0894;0.81313 +;-;-;-;-;- + 338 + NaN NaN 103317.5 NaN 8892 2742 11634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11637 54.348 NaN 144410 35 0 13416 0.263 + 15295 LPAKGCLKL 9 53 471.7950610528023 NaN 0 471.7845764160156 PEAK HCD FTMS 0 0 0 11634 12928.37109375 0.7499943914648746 -1 0.032794952392578125 3 Unmodified _LPAKGCLKL_ ENSG00000136158|ENST00000377104|SPRY2 1.844237919475145 0.28630992268396543 1 KVEN 4 8 25.745 0 0 2.7343 0 0 131.11699492800602 337.18634973697505 468.30334466498107 0 0 0 0 0 0 0 0 0.3807196863200844 KVEN 2.7343 - 35 + NaN NaN 106744.2 NaN 8893 2742 11634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11638 54.352 NaN 51863 35 0 5357.7 0.261 + 20818 PHQKNLNP 8 38 474.2559577834773 946.4973626337546 2 475.23040771484375 MULTI HCD FTMS 0 0 0 11634 15565.947265625 0.1411593023853898 -10 0.28501129150390625 4 Unmodified _PHQKNLNP_ ENST00000238961.8_1_10:102676368-102676479:+|nuORF 2.577480529830294 0.5381683276125971 1 SQ 2 7 10.969 0 0 1.1589 0 0 130.09307904176086 598.2930391900999 728.3861182318608 0 0 0 0 0 0 0 0 0 SQ 1.1589 - 12 + NaN NaN 91152.7 NaN 8894 2742 11634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11640 54.357 NaN 3060800 35 0 363570 0.327 + 24072 RYAEAVQLL 9 114 531.800988424696 1061.587423916192 2 531.8012084960938 MULTI HCD FTMS 0 0 0 11639 856250.25 0.8523188759149127 1 -0.03277587890625 1 Unmodified _RYAEAVQLL_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 40.23920728925047 0.06424668180817725 1 QVAC(Carbamidomethyl (C))VE{I|L} 7 6 61.31 0 0 5.7753 0 0 244.1785603253922 0 244.1785603253922 0 18.12977812912628 0 0 0 1.305462187404089 0 0.3807196863200844 1.2544321917401078 QVAC(Carbamidomethyl (C))VE{I|L} 5.7753 - 6474 NaN NaN 555127.4 NaN 8895 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11641 54.361 NaN 801490 35 0 373590 0.261 + 1975 DANVPQYVI 9 44 509.76392059353134 1017.5132882538627 2 509.76397705078125 MULTI HCD FTMS 0 0 0 11639 475654.375 1 0 0 2 Unmodified _DANVPQYVI_ REV__ENSG00000001167|ENST00000341376|NFYA;REV__nc|ENSG00000001167|P23511-2|NFYA 13.90604991867851 0.24021115267848145 1 YV{I|L} 3 -1 36.198 0 0 3.5575 0 0 624.2867458371439 0 624.2867458371439 0 31.593793813122062 0 0 0 1 0 0 0 YV{I|L} 3.5575 + + 56 NaN NaN 207551.3 NaN 8896 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11642 54.365 NaN 579180 35 0 72831 0.261 + 18338 MPHDLITQL 9 93 542.2786251806476 1082.5426974280952 2 542.2786254882812 MULTI HCD FTMS 0 0 0 11639 262590.8125 1 0 0 3 Oxidation (M) _M(Oxidation (M))PHDLITQL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 63.960520009940105 0.0120409805053046 1 {[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L} 9 5 + 59.645 0 0 5.5097 5.5097 83.589 0 0 0 4.137342758552691 45.66569691289537 4.137342758552691 3.0102999566398125 0 1.555462187404089 0 1.1237125054200234 0 {[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L};{[QN]|[E{I|L}]|[KN]}G[Y{M(Oxidation (M))|F}]{I|L}TQ{I|L};{[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}G[Y{M(Oxidation (M))|F}]{I|L}T[AG]{I|L};[QT][YK]{[DS]|[MA]|[CV]|TT}TQ{I|L};{[QN]|[E{I|L}]|[KN]}[HV]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L}TQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[{M(Oxidation (M))|F}C]|[YS]}{[NV]|[RG]}TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{I|L}TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K{[NV]|[RG]}TQ{I|L} 5.5097;5.2316;4.6591;4.381;3.6385;3.4772;2.7578;2.204;2.1174;2.0231 -;-;-;-;-;-;-;-;-;- 668 NaN NaN 173408.1 NaN 8897 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11643 54.368 NaN 758990 35 0 154510 0.261 + 26008 SPEEIDAQL 9 68 501.2431019093356 1000.4716508854713 2 501.2431335449219 MULTI HCD FTMS 0 0 0 11639 326658.78125 0.1377141462753467 -6 0.15026092529296875 4 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 85.64151623876279 0.004640175941193596 1 D{I|L}QDAQ{I|L} 7 5 72.912 0 0 7.2878 0 0 199.09561354804845 0 199.09561354804845 0 49.953132367022164 0 0 0 1.4247425010840047 0 1.6593793813122062 0 D{I|L}QDAQ{I|L} 7.2878 - 437 NaN NaN 196272 NaN 8898 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11644 54.371 NaN 383160 35 0 48217 0.261 + 6370 FPGEAERVAF 10 81 561.7829852016356 1121.551417470071 2 561.783203125 MULTI HCD FTMS 0 0 0 11639 130036.7265625 0.5479051509605383 -4 0.10778427124023438 5 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 44.391923383255 0.10729416141032597 1 {M(Oxidation (M))|F}PGEAERVA{M(Oxidation (M))|F} 10 0 + 75.1 0 0 6.6961 6.6961 86.736 0 0 0 63.17146613611058 16.53212513775344 16.53212513775344 5.197953115119063 0 1.8737125054200234 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}PGEAERVA{M(Oxidation (M))|F};{M(Oxidation (M))|F}PGEAKQQA{M(Oxidation (M))|F};{M(Oxidation (M))|F}PGEAKV{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KP]{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6961;6.2326;5.3688;2.3563 +;-;-;- + 193 + NaN NaN 163366.6 NaN 8899 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11645 54.375 NaN 255840 35 0 19419 0.261 -1 VPIRLDMEI 9 73 551.3008074498359 1100.5870619664718 2 551.3005981445312 MULTI HCD FTMS 0 0 0 11639 107659.265625 0.7456507270702591 -6 0.15026092529296875 6 Oxidation (M) _VPIRLDM(Oxidation (M))EI_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 26.88365393820708 0.12808753336095696 1 EW[KT]DK{M(Oxidation (M))|F} 7 -1 26.713 0 0 2.4271 0 0 148.11954237716674 0 148.11954237716674 0 8.040681998460567 0 0 0 0 0 0.3494850021680094 0.3252574989159953 EW[KT]DK{M(Oxidation (M))|F} 2.4271 - 272 + NaN NaN 116997.1 NaN 8900 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11646 54.378 NaN 161630 35 0 13775 0.261 -1 LYANMFERL 9 57 586.7918096295268 1171.5690663258536 2 586.7742309570312 MULTI HCD FTMS 0 0 0 11639 21194.751953125 0.055570891610912686 14 -0.24895477294921875 7 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 28.494509381512117 0.11816142465008336 1 {M(Oxidation (M))|F}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 8 -1 40.583 0 0 3.464 0 0 129.06999513620354 0 129.06999513620354 0 21.999868935529747 0 0 0 0.8494850021680094 0 0.3494850021680094 0 {M(Oxidation (M))|F}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 3.464 - 159 + NaN NaN 105452.7 NaN 8901 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11647 54.381 NaN 68281 35 0 9460.4 0.261 -1 RYLDELMKL 9 35 598.8210212726874 NaN 0 598.8204956054688 PEAK HCD FTMS 0 0 0 11639 21221.216796875 0.5111607231067281 -2 0.049007415771484375 8 Oxidation (M) _RYLDELM(Oxidation (M))KL_ ENSG00000140575|ENST00000268182|IQGAP1 10.150570793230772 0.24605859276004066 1 {M(Oxidation (M))|F}{I|L}E 3 -1 19.169 0 0 1.6033 0 0 259.19201699317995 544.2519014947874 803.4439184879673 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}E 1.6033 - 7 + NaN NaN 92795.2 NaN 8902 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11648 54.385 NaN 174830 35 0 19087 0.261 + 33431 YGSRLDYFQ 9 59 574.7724221195749 NaN 0 574.7725219726562 PEAK HCD FTMS 0 0 0 11639 25752.345703125 0.5460732156848225 -1 0.01621246337890625 9 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.2220448417561729 1 S 1 8 17.787 0 0 1.55 0 0 840.4138617234374 217.0617617242797 1057.4756234477172 0 0 0 0 0 0.9247425010840047 0 0.3054621874040891 0 + S 1.55 + + 25 + NaN NaN 114410.1 NaN 8903 2743 11639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11650 54.389 NaN 3140300 35 0 358030 0.327 + 32370 VYVQNVVKL 9 99 531.3214729674228 1060.6283930016455 2 531.3217163085938 MULTI HCD FTMS 0 0 0 11649 1829851.125 0.765807762218688 -3 0.08178329467773438 1 Unmodified _VYVQNVVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 149.9946105101851 8.83195450578534E-06 1 VYVQNVVK{I|L} 9 0 + 93.43 0 0 8.809 8.809 89.452 0 0 0 3.493624753846092 3.493624753846092 3.493624753846092 3.493624753846092 0 2.853917193908117 1.5228787452803376 0 0.9361818737241734 + + VYVQNVVK{I|L};[YV]VQNVVK{I|L};[YV]VQNVV{I|L}K;VYVQGGVVK{I|L};VYV[AG]NVVK{I|L};[YV]V[AG]NVVK{I|L};[YV]VQGGVVK{I|L};[YV]VQGGVV{I|L}K;[YV]V[AG]NVV{I|L}K;VYV[AG]GGVVK{I|L} 8.809;8.4796;7.96;7.9408;7.9408;7.6114;7.6114;7.0919;7.0919;7.0767 +;+;-;-;-;-;-;-;-;- + 3883 + NaN NaN 562538.8 NaN 8904 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11651 54.394 NaN 1608200 35 0 150340 0.261 + 9757 HYILHNSFF 9 105 589.2930832030781 1176.5716134729562 2 589.2933349609375 MULTI HCD FTMS 0 0 0 11649 826121.625 0.550945447591444 5 -0.09694290161132812 2 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 214.40971776235787 3.500349283280877E-22 1 HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 103.1 0 0 8.7625 8.7625 88.532 0 0 0 1.68842009652208 1.68842009652208 1.68842009652208 1.68842009652208 0 3.1989700043360187 1.5228787452803376 1.579689690656103 1.5501648626366045 + + HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVN[{I|L}T]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 8.7625;8.619;7.8363;7.3042;6.7423;6.6623;6.5457;6.1463;5.9997;5.5785 +;+;-;-;-;-;-;-;-;- + 2722 + NaN NaN 328088.5 NaN 8905 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11652 54.397 NaN 1120900 35 0 105720 0.262 + 18237 MPDVDLHL 8 95 478.23169742748837 954.4488419217768 2 478.2314453125 MULTI HCD FTMS 0 0 0 11649 554144.625 0.7506479252338474 -5 0.14056015014648438 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 114.94377779790601 0.029101733901958818 1 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 61.208 0 0 6.4129 6.4129 84.452 0 0 0 1.398416264213644 1.398416264213644 1.398416264213644 1.398416264213644 0 2.0114393726401687 0 0.25 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}]{I|L}{[ES]|[DT]|[{I|L}C]}MPE;[H{I|L}]WW[WQ] 6.4129;6.2664;4.8071;3.5201;0.93691 +;+;-;-;- + 335 + NaN NaN 255746.3 NaN 8906 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11653 54.401 NaN 601310 35 0 205910 0.261 + 5436 FIFDLPAHQK 10 46 405.88870973972695 1214.6442998193809 3 405.8889465332031 MULTI HCD FTMS 0 0 0 11649 216221.40625 0.9003253571133938 -3 0.08178329467773438 4 Unmodified _FIFDLPAHQK_ ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 17.86316937532769 0.34402595751606074 1 {I|L}{M(Oxidation (M))|F}D{I|L}E 5 6 39.648 0 0 3.2642 0 0 579.3127743355873 0 579.3127743355873 0 25.044321917401078 0 0 0 1.3182503180159344 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}D{I|L}E 3.2642 - 50 NaN NaN 170508.3 NaN 8907 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11654 54.404 NaN 199000 35 0 12019 0.261 -1 MYIARQLSF 9 60 572.7946702571303 1143.5747875810605 2 572.794677734375 MULTI HCD FTMS 0 0 0 11649 57984.11328125 0.49535603291576275 -9 0.23876571655273438 5 Oxidation (M) _M(Oxidation (M))YIARQLSF_ ENSG00000064932|ENST00000361757|SBNO2;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;nc|ENSG00000139697|A3KN83-2|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 38.175570920033316 0.07371992880350783 1 {I|L}{I|L}{I|L}E{I|L}S{M(Oxidation (M))|F} 7 -1 45.265 0 0 3.9582 0 0 310.09861952949376 0 310.09861952949376 0 27.306679035102164 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {I|L}{I|L}{I|L}E{I|L}S{M(Oxidation (M))|F} 3.9582 - 124 NaN NaN 111942.8 NaN 8908 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11655 54.407 NaN 261810 35 0 11739 0.261 + 7594 FYHKYFNYL 9 66 647.8164508336723 1293.6183487341445 2 647.8162841796875 MULTI HCD FTMS 0 0 0 11649 40579.3984375 0.05120619030880406 34 -0.7678642272949219 6 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 55.50274090549119 0.023872834264864425 1 KY{M(Oxidation (M))|F}NY{I|L} 6 3 41.425 0 0 3.2022 0 0 447.1909657209 0 447.1909657209 0 28.315468932362577 0 0 0 1.4247425010840047 0 0 0.7614393726401688 + KY{M(Oxidation (M))|F}NY{I|L} 3.2022 + + 120 NaN NaN 116042.5 NaN 8909 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11656 54.411 NaN 178550 35 0 13683 0.261 + 18719 MYSFVNDKF 9 56 583.7629216825127 1165.5112904318253 2 583.7613525390625 MULTI HCD FTMS 0 0 0 11649 90649.5546875 0.7226925337121043 -6 0.15686798095703125 7 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 49.52724829834842 0.03223213920720493 1 DNV{M(Oxidation (M))|F}S[YE] 7 8 48.505 0 0 4.1617 0 0 293.17280776191564 0 293.17280776191564 0 32.28424783104984 0 0 0 1.805462187404089 0 0.3494850021680094 0 DNV{M(Oxidation (M))|F}S[YE] 4.1617 - 213 NaN NaN 113004.8 NaN 8910 2744 11649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11658 54.416 NaN 441800 35 0 44578 0.327 + 26694 SYAPPTDSF 9 69 492.71895487662374 983.4233568200475 2 492.7193298339844 MULTI HCD FTMS 0 0 0 11657 156266.84375 0.25334793608538164 8 -0.14205551147460938 1 Unmodified _SYAPPTDSF_ ENSG00000118515|ENST00000367858|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 144.35026110057638 1.4798765981150827E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F} 9 0 + 77.814 0 0 7.9126 7.9126 88.79 0 0 0 3.0981708194715196 53.62704280191288 3.0981708194715196 5.10090614668492 0 2.860924374808178 0 0.9361818737241735 0 + + {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}APPESS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}APEPSS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAPTDS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAPESS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAEPSS{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[TP]PSS{M(Oxidation (M))|F} 7.9126;7.3939;7.3653;4.8042;4.2855;4.2569;2.9106 +;-;-;-;-;-;- + 537 NaN NaN 153800.9 NaN 8911 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11659 54.42 NaN 399080 35 0 20085 0.261 + 28624 TQTLVREYF 9 83 578.80322237677 1155.59189182034 2 578.8031616210938 MULTI HCD FTMS 0 0 0 11657 68653.3203125 0.39486553149515013 4 -0.07081985473632812 2 Unmodified _TQTLVREYF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 31.635753872319068 0.10374135269456516 1 [QT]T{I|L}VREY{M(Oxidation (M))|F} 9 0 + 44.076 0 0 3.8141 3.8141 83.506 0 0 0 2.243012119929091 6.231019439503221 2.243012119929091 8.633972471069079 0 2.0673851849885576 0 0.4247425010840047 0 + + [QT]T{I|L}VREY{M(Oxidation (M))|F};[QT]TR[{I|L}V]EY{M(Oxidation (M))|F};[QT]T{I|L}V[WP]T[NP];[QT]T{I|L}{[WT]|[RM]}[VP][NP];[QT]T[WP]V[VP][QT];R{[WT]|[RM]}[EP]RT[NP];[VG]{[CA]|SS}{I|L}V[WP]T[NP];[VG]{[CA]|SS}{I|L}VREY{M(Oxidation (M))|F};[QT]T[WP]V{I|L}T[NP];R[{M(Oxidation (M))|F}T][HK]RT[NP] 3.8141;3.067;3.0196;2.4124;1.8948;1.7341;1.5603;1.4857;1.3787;1.1292 +;-;-;-;-;-;-;-;-;- + 552 + NaN NaN 149423 NaN 8912 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11660 54.423 NaN 593700 35 0 25868 0.261 -1 SPERMMALG 9 105 512.2342316561685 1022.453910379137 2 512.2343139648438 MULTI HCD FTMS 0 0 0 11657 145222.625 0.43879816512288805 -3 0.07511138916015625 3 2 Oxidation (M) _SPERM(Oxidation (M))M(Oxidation (M))ALG_ ENST00000564218.5_1_16:31448362-31454203:-|nuORF 34.40172386719151 0.0910440009062557 1 SPEE{I|L}DQ 7 -1 70.491 0 0 6.8943 0 0 0 221.09272180728752 221.09272180728752 48.75192609659102 0 0 0 0 2.055462187404089 1.5228787452803376 0 1.2346368802282015 SPEE{I|L}DQ 6.8943 - 1366 + NaN NaN 174774.8 NaN 8913 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11661 54.427 NaN 239880 35 0 24376 0.261 + 27716 TASIVEQSL 9 57 474.2559577834773 946.4973626337546 2 474.2562255859375 MULTI HCD FTMS 0 0 0 11657 146676.8125 0.63322609707602 -3 0.07511138916015625 4 Unmodified _TASIVEQSL_ ENSG00000165169|ENST00000378578|DYNLT3 79.59630418116434 0.005983006570063981 1 [TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}QS{I|L} 9 0 + 74.362 0 0 7.8566 7.8566 91.19 0 0 0 20.87128018967597 61.26341543650334 20.87128018967597 9.208187539523749 0 1.75 1.5228787452803376 1.2302046884880937 0 + + [TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}QS{I|L};[TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}[AG]S{I|L};[TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}[VG][TA] 7.8566;6.8837;3.7396 +;-;- + 115 NaN NaN 139413.5 NaN 8914 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11662 54.43 NaN 174760 35 0 13208 0.261 + 18720 MYSFVNDKF 9 56 583.7629216825127 1165.5112904318253 2 583.7636108398438 MULTI HCD FTMS 0 0 0 11657 88028.3203125 0.7017950619213992 -5 0.12747573852539062 5 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 57.107585691075435 0.021627766313179933 1 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F}VNDK{M(Oxidation (M))|F} 9 0 + 76.609 0 0 6.573 6.573 88.979 0 0 0 67.14509699961575 5.999161495794425 5.999161495794425 9.208187539523749 0 2.504432191740108 0 0.7742275032520141 0 + + {M(Oxidation (M))|F}YS{M(Oxidation (M))|F}VNDK{M(Oxidation (M))|F};{M(Oxidation (M))|F}YS{M(Oxidation (M))|F}VGGDK{M(Oxidation (M))|F};{M(Oxidation (M))|F}YS{M(Oxidation (M))|F}V[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]};{M(Oxidation (M))|F}Y[YG]{I|L}NDK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[YG]{I|L}GGDK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[YG]{I|L}[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]} 6.573;5.7829;4.9638;4.5352;3.7452;2.926 +;-;-;-;-;- + 377 + NaN NaN 113135.2 NaN 8915 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11663 54.433 NaN 110510 35 0 7457.1 0.262 + 15333 LPAVGEHVF 9 60 484.7635111066097 967.5124692800194 2 484.76397705078125 MULTI HCD FTMS 0 0 0 11657 48689.3359375 0.9057943289268362 -1 0.026123046875 6 Unmodified _LPAVGEHVF_ ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 39.957323273324995 0.06554068735427583 1 {I|L}PAV 4 5 32.907 0 0 3.4012 0 0 0 584.2493380182249 584.2493380182249 5.4330502818412185 0 0 0 0 0.6989700043360187 0 0 0 + {I|L}PAV 3.4012 + + 123 + NaN NaN 101591.4 NaN 8916 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11664 54.437 NaN 151160 35 0 9114 0.261 -1 LYANMFERL 9 59 586.7918096295268 1171.5690663258536 2 586.7910766601562 MULTI HCD FTMS 0 0 0 11657 39206.26171875 0.10279558474004671 16 -0.28061676025390625 7 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 31.26834338654808 0.10542797264966089 1 [Y{I|L}]A{M(Oxidation (M))|F} 4 -1 36.159 0 0 3.0863 0 0 0 674.3246870136066 674.3246870136066 15.140595913864772 0 0 0 0 0.9247425010840047 2 0 0 [Y{I|L}]A{M(Oxidation (M))|F} 3.0863 - 247 NaN NaN 114662.5 NaN 8917 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11665 54.44 NaN 216450 35 0 64365 0.263 + 1624 AYYEFKKQFF 10 43 457.56398358557794 1369.6701213569338 3 457.5646667480469 MULTI HCD FTMS 0 0 0 11657 32899.140625 0.4088879127315323 -3 0.07511138916015625 8 Unmodified _AYYEFKKQFF_ ENSG00000061936|ENST00000261674|SFSWAP;ENST00000538548.5_1_12:132198725-132271134:+|nuORF;nc|ENSG00000061936|Q12872-2|SFSWAP 8.444304893310646 0.4306066564229251 1 AY 2 8 45.217 0 0 3.3013 0 0 0 1132.547069211562 1132.547069211562 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 + AY 3.3013 + + 9 + NaN NaN 111700.5 NaN 8918 2745 11657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11667 54.445 NaN 352660 35 0 19413 0.327 + 18350 MPLLRQEEL 9 72 564.8077959497971 1127.601038966394 2 564.8080444335938 MULTI HCD FTMS 0 0 0 11666 178314.484375 0.7418648006101269 -2 0.05553436279296875 1 Unmodified _MPLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 72.96794272382148 0.008127836904478181 1 MP{I|L}{I|L} 4 5 54.769 0 0 4.8571 0 0 0 670.3167602828397 670.3167602828397 14.58674701179433 0 0 0 0 1.1861818737241734 1.3979400086720375 0 0 + MP{I|L}{I|L} 4.8571 + + 512 + NaN NaN 136011.7 NaN 8919 2746 11666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11668 54.449 NaN 387850 35 0 34855 0.261 + 17006 LYISEVRNI 9 69 553.8139411376042 1105.6133293420082 2 553.8137817382812 MULTI HCD FTMS 0 0 0 11666 119633.890625 0.6916105188888408 -2 0.05553436279296875 2 Unmodified _LYISEVRNI_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 106.94017166704063 0.003441928997083001 1 [Y{I|L}]{I|L}SEVRN{I|L} 9 0 + 92.084 0 0 8.3287 8.3287 92.018 0 0 0 22.674837133936308 60.224899892507494 22.674837133936308 9.208187539523749 0 2.8494850021680094 1.6989700043360187 0.930884548956689 0 + + [Y{I|L}]{I|L}SEVRN{I|L};[Y{I|L}]{I|L}SEVRGG{I|L};[YV][{I|L}T]EVRN{I|L};[YV][{I|L}T]EVRGG{I|L} 8.3287;7.4959;5.4814;4.6485 +;-;-;- + 888 NaN NaN 149962.5 NaN 8920 2746 11666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11669 54.453 NaN 165740 35 0 11984 0.261 -1 MIAFHDPEL 9 61 544.7577867819459 1087.5010206306918 2 544.7578125 MULTI HCD FTMS 0 0 0 11666 15616.62890625 0.20782377950886127 1 -0.01602935791015625 3 Oxidation (M) _M(Oxidation (M))IAFHDPEL_ ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-2|TBCK;nc|ENSG00000145348|Q8TEA7-3|TBCK;TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant 14.838274106304384 0.23215694253501695 1 REP{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 10.757 0 0 0.98917 0 0 469.1861205408797 0 469.1861205408797 0 -1.9458304218226647 -1.9458304218226647 0 0 0 0 0 0 REP{[MS]|[{M(Oxidation (M))|F}A]} 0.98917 - 166 + NaN NaN 118831 NaN 8921 2746 11666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11670 54.456 NaN 349290 35 0 17712 0.261 -1 FPDRIMNTF 9 75 578.7764311978499 1155.5383094624997 2 578.7759399414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 9.5439744041441 0.27789851728676895 1 [DN]T{I|L}V 5 -1 22.135 0 0 1.9156 0 0 0 610.2627676992734 610.2627676992734 -2.277522261115408 0 -2.277522261115408 0 0 0 0 0.3807196863200844 0 [DN]T{I|L}V 1.9156 - 271 + NaN NaN 139792.1 NaN 8922 2746 11666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11672 54.461 NaN 1507700 35 0 89280 0.327 + 2364 DPEGLSIDNL 10 99 536.7620601129189 NaN 0 536.75146484375 PEAK HCD FTMS 0 0 0 11671 24113.16015625 0.8507909446059679 1 -0.01599884033203125 1 Unmodified _DPEGLSIDNL_ REV__ENSG00000125170|ENST00000340099|DOK4;REV__ENSG00000206052|ENST00000382713|DOK6;REV__ENST00000561659.5_1_16:57508703-57509771:-|nuORF 18.1463463914782 0.29565035219289926 1 VHD{I|L}ED 6 -1 28.031 0 0 2.616 0 0 165.1011688216576 195.07784448795158 360.1790133096092 0 0 0 0 0 0.3807196863200844 0 1.341129063296272 0 VHD{I|L}ED 2.616 - 508 + NaN NaN 316592.4 NaN 8923 2747 11671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11673 54.465 NaN 728740 35 0 212410 0.261 -1 RRMYNLFWRHF 11 66 547.9443518901178 1640.811226270553 3 547.9443359375 MULTI HCD FTMS 0 0 0 11671 203818.390625 0.5136372982828928 5 -0.08978271484375 2 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 1.3296431237094175 0.4130893034510334 1 NQQ[WK]V{M(Oxidation (M))|F} 7 -1 35.666 0 0 2.1737 0 0 692.3630584012157 0 692.3630584012157 0 23.67676984150563 0 0 0 1.774227503252014 0 0 0 NQQ[WK]V{M(Oxidation (M))|F} 2.1737 - 323 + NaN NaN 209668.7 NaN 8924 2747 11671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11674 54.469 NaN 638010 35 0 69539 0.261 + 34297 YPDSHLPTL 9 87 521.7637531121 1041.5129532909998 2 521.7640380859375 MULTI HCD FTMS 0 0 0 11671 362514.59375 0.5954905011795371 9 -0.13715744018554688 3 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 103.74828524460852 0.00396301343438984 1 YPD[HS]{I|L}PT{I|L} 9 0 + 78.386 0 0 7.5262 7.5262 93.054 0 0 0 53.11506528157551 12.860980233036159 12.860980233036159 15.348469724511617 0 2.388210492164445 1.3010299956639813 1.341129063296272 0 + + YPD[HS]{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};Y[{I|L}A]RYDE{I|L};Y[{I|L}A]{[QN]|[E{I|L}]|[KN]}DRY 7.5262;6.0525;1.7944;0.29475 +;+;-;- + 423 + NaN NaN 178919.2 NaN 8925 2747 11671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11675 54.472 NaN 694400 35 0 55981 0.261 -1 PHHDDDTAM 9 86 527.6990718438628 1053.3835907545256 2 527.6992797851562 MULTI HCD FTMS 0 0 0 11671 233059.140625 0.6888734253962788 -4 0.104339599609375 4 Oxidation (M) _PHHDDDTAM(Oxidation (M))_ nc|ENSG00000114737|Q9NSE2-3|CISH 7.289230182591677 0.29575926068275815 1 DDG{M(Oxidation (M))|F} 4 -1 31.414 0 0 2.9822 0 0 601.2293681482628 0 601.2293681482628 0 8.418468498760703 0 0 0 0 0 0.4247425010840047 0 DDG{M(Oxidation (M))|F} 2.9822 - 407 + NaN NaN 191594.2 NaN 8926 2747 11671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11677 54.477 NaN 268390 35 0 21003 0.327 + 22349 QPLSKTWEL 9 77 551.3008074498359 1100.5870619664718 2 551.302001953125 MULTI HCD FTMS 0 0 0 11676 82564.3671875 0.5718428420076381 -1 0.01599884033203125 1 Unmodified _QPLSKTWEL_ ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000121481|Q99496-2|RNF2 26.268140514670165 0.13340543277302316 1 EW[KT]DK{M(Oxidation (M))|F} 7 7 20.908 0 0 1.8997 0 0 148.1186802563339 0 148.1186802563339 0 0.44145341547320527 0 0 0 0 0 0.6505149978319906 0 EW[KT]DK{M(Oxidation (M))|F} 1.8997 - 245 + NaN NaN 142950.1 NaN 8927 2748 11676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11678 54.481 NaN 260740 35 0 17563 0.261 + 21198 PQLVQQSIP 9 60 505.2873508098371 1008.5601486864742 2 505.27825927734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PQLVQQSIP_ REV__ENSG00000172995|ENST00000684406|ARPP21;REV__nc|ENSG00000172995|Q9UBL0-3|ARPP21;REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21;REV__nc|ENSG00000172995|Q9UBL0-5|ARPP21;REV__nc|ENSG00000172995|Q9UBL0|ARPP21 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.448 0 0 843.481426617918 0 843.481426617918 0 1.5051499783199063 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.448 - 29 + NaN NaN 124772.1 NaN 8928 2748 11676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11680 54.486 NaN 2689600 35 0 534460 0.327 + 26009 SPEEIDAQL 9 73 501.2431019093356 1000.4716508854713 2 501.24334716796875 MULTI HCD FTMS 0 0 0 11679 2372006 1 0 0 1 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 147.05914393524117 1.1935124485855994E-05 1 {[DA]|[EG]}QQ{I|L}DAQ 8 5 85.455 0 0 8.5415 0 0 0 128.07190079013483 128.07190079013483 43.5208481099214 0 0 0 0 1.8494850021680094 1.3010299956639813 2.2346368802282015 0 {[DA]|[EG]}QQ{I|L}DAQ 8.5415 - 1236 NaN NaN 490608.4 NaN 8929 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11681 54.49 NaN 828110 35 0 201530 0.261 + 19961 NYGHVYAVF 9 90 535.2588540864035 1068.503155239607 2 535.2590942382812 MULTI HCD FTMS 0 0 0 11679 466490.59375 0.9646233037088666 1 -0.029064178466796875 2 Unmodified _NYGHVYAVF_ ENSG00000067829|ENST00000217901|IDH3G;nc|ENSG00000067829|P51553-2|IDH3G 70.71552829651908 0.008856681705782516 1 [YN][RH]YAV 7 3 58.249 0 0 5.4514 0 0 0 162.05609665613636 162.05609665613636 39.040616466225444 0 0 0 0 2.274227503252014 1.6989700043360187 0 0.7302046884880937 [YN][RH]YAV 5.4514 - 647 NaN NaN 206993.7 NaN 8930 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11682 54.494 NaN 1163400 35 0 54851 0.261 + 6216 FPEQIAEKL 9 116 537.7949039085173 1073.5752548838345 2 537.7955932617188 MULTI HCD FTMS 0 0 0 11679 261371.140625 0.46308900764163513 8 -0.11923599243164062 3 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 111.30893174071366 0.002728716625640322 1 {I|L}MEQ{I|L}AE 7 4 67.798 0 0 6.3151 0 0 0 256.16648279361567 256.16648279361567 41.2443327706321 0 0 0 0 2.2104093769761874 1.3979400086720375 1.1496498648046138 0.3252574989159953 {I|L}MEQ{I|L}AE 6.3151 - 1962 + NaN NaN 261587.8 NaN 8931 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11683 54.497 NaN 377100 35 0 136430 0.261 + 1976 DANVPQYVI 9 59 509.76392059353134 1017.5132882538627 2 509.7642517089844 MULTI HCD FTMS 0 0 0 11679 159029.0625 0.3343374325107385 6 -0.09267807006835938 4 Unmodified _DANVPQYVI_ REV__ENSG00000001167|ENST00000341376|NFYA;REV__nc|ENSG00000001167|P23511-2|NFYA 13.90604991867851 0.24021115267848145 1 YV{I|L} 3 -1 32.307 0 0 3.1751 0 0 624.2868519513687 0 624.2868519513687 0 17.703037561203843 0 0 0 0.7614393726401688 0 0 0 YV{I|L} 3.1751 + + 111 NaN NaN 141279.1 NaN 8932 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11684 54.501 NaN 380090 35 0 51694 0.261 + 17946 MITDLEERL 9 73 568.2866526770156 1134.558752420831 2 568.2870483398438 MULTI HCD FTMS 0 0 0 11679 161404.609375 0.11853060713990655 20 -0.41886138916015625 5 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 63.227496030279354 0.01306643085373406 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 98.351 0 0 8.6687 8.6687 88.065 0 0 0 18.142492736872597 86.38866283220501 18.142492736872597 1.020599913279625 0 2 2 0.6747425010840047 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{[QN]|[E{I|L}]|[KN]}[KQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TE{I|L} 8.6687;8.5787;5.0103;2.3874 -;+;-;- + 419 NaN NaN 145690.5 NaN 8933 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11685 54.504 NaN 219670 35 0 18809 0.261 + 879 AYAIIKEEL 9 61 525.2980346679688 NaN 0 525.2980346679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 47.748688679222035 0.05342496295576811 1 {I|L}{I|L}A 3 7 23.672 0 0 2.2575 0 0 517.2745755841812 231.07715784244377 748.351733426625 0 0 0 0 0 1.3494850021680094 0 0 0 {I|L}{I|L}A 2.2575 - 82 + NaN NaN 108499.5 NaN 8934 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11686 54.507 NaN 188370 35 0 21197 0.261 -1 0 63 504.10760498046875 NaN 0 504.10760498046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 A 1 -1 5.4846 0 0 0.54616 0 0 248.88851240058756 681.2512070569276 930.1397194575152 0 0 0 0 0 0 0 0 0 A 0.54616 - 6 + NaN NaN 113446.2 NaN 8935 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11687 54.511 NaN 113690 35 0 7669.5 0.261 + 35895 YYSNLHQTF 9 59 586.7741853343482 NaN 0 586.4368896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YYSNLHQTF_ ENSG00000171806|ENST00000310392|METTL18 11.494710602746466 0.23954507882326587 1 TN{M(Oxidation (M))|F} 3 7 15.177 0 0 1.2955 0 0 165.07252730756505 641.3038424127561 806.3763697203212 0 0 0 0 0 0.3494850021680094 0 0 0 TN{M(Oxidation (M))|F} 1.2955 - 10 + NaN NaN 101370.9 NaN 8936 2749 11679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11689 54.515 NaN 774030 35 0 148030 0.327 + 13161 KYLQSTISF 9 86 543.7953900880038 1085.5762272428076 2 543.7955932617188 MULTI HCD FTMS 0 0 0 11688 503732.625 0.33011340155093116 -7 0.158782958984375 1 Unmodified _KYLQSTISF_ ENSG00000100038|ENST00000357179|TOP3B;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;nc|ENSG00000100038|O95985-2|TOP3B;nc|ENSG00000100038|O95985-3|TOP3B;TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant 93.93812099017352 0.0044227730261779084 1 KY{I|L}QST{I|L}S{M(Oxidation (M))|F} 9 0 + 91.904 0 0 8.4659 8.4659 92.202 0 0 0 9.318722087674658 9.318722087674658 9.318722087674658 9.208187539523749 0 2.4247425010840047 0 0.7302046884880937 0 + + KY{I|L}QST{I|L}S{M(Oxidation (M))|F};KY{I|L}[AG]ST{I|L}S{M(Oxidation (M))|F};[YK]{I|L}QST{I|L}S{M(Oxidation (M))|F};[EP][KP][PA]T{I|L}S{M(Oxidation (M))|F};KY{I|L}{[ET]|[MV]}AKS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}T{I|L}[YQ]KS{M(Oxidation (M))|F};[Q{I|L}]E[PG][VP]{I|L}S{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}[H{I|L}]{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}T{I|L}[YQ]SK{M(Oxidation (M))|F} 8.4659;7.6177;7.6075;4.4357;4.357;3.7683;3.3734;3.0392;1.9912 +;-;+;-;-;-;-;-;- + 988 + NaN NaN 198614.1 NaN 8937 2750 11688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11690 54.52 NaN 366310 35 0 33662 0.261 + 6371 FPGEAERVAF 10 78 561.7829852016356 1121.551417470071 2 561.7830810546875 MULTI HCD FTMS 0 0 0 11688 178483.984375 0.7520359592873977 3 -0.042171478271484375 2 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 44.391923383255 0.10729416141032597 1 {M(Oxidation (M))|F}PGEAERVA{M(Oxidation (M))|F} 10 0 + 66.24 0 0 5.9061 5.9061 90.618 0 0 0 49.786465885450966 15.026975159433533 15.026975159433533 17.985775332874283 0 1.9419628234359578 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}PGEAERVA{M(Oxidation (M))|F};{M(Oxidation (M))|F}D[PA]AERVA{M(Oxidation (M))|F} 5.9061;4.3025 +;- + 149 + NaN NaN 144236.4 NaN 8938 2750 11688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11691 54.523 NaN 210600 35 0 43858 0.261 + -1 VIVGLVWVM 9 69 516.3022984727289 NaN 0 516.7508544921875 PEAK HCD FTMS 0 0 0 11688 63090.4765625 0.779974760577049 -3 0.054443359375 3 Oxidation (M) _VIVGLVWVM(Oxidation (M))_ REV__ENSG00000138678|ENST00000264409|GPAT3 5.230669730166228 0.26989974671959066 1 RE 2 -1 11.281 0 0 1.0947 0 0 580.3945922073734 162.02266870670158 742.417260914075 0 0 0 0 0 0 0 0.3807196863200844 0 RE 1.0947 - 31 + NaN NaN 107627.6 NaN 8939 2750 11688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11693 54.528 NaN 1859000 35 0 242620 0.327 + 32371 VYVQNVVKL 9 95 531.3214729674228 1060.6283930016455 2 531.3219604492188 MULTI HCD FTMS 0 0 0 11692 1130676.625 0.4731974771905166 4 -0.050933837890625 1 Unmodified _VYVQNVVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 123.45060196383646 0.0010021686353097689 1 VYVQNVVK{I|L} 9 0 + 97.164 0 0 9.161 9.161 89.321 0 0 0 2.271212547196626 2.271212547196626 2.271212547196626 2.271212547196626 0 3.004432191740108 1.5228787452803376 0 0.6307196863200843 + + VYVQNVVK{I|L};[YV]VQNVVK{I|L};[YV]VQNVV{I|L}K;VYV[AG]NVVK{I|L};VYVQGGVVK{I|L};[YV]V[AG]NVVK{I|L};[YV]VQGGVVK{I|L};[YV]QVNVVK{I|L};[YV]VQGGVV{I|L}K;[YV]V[AG]NVV{I|L}K 9.161;8.9468;8.497;8.2928;8.2928;8.0786;8.0786;8.0255;7.6288;7.6288 +;+;-;-;-;-;-;-;-;- + 1764 + NaN NaN 361809.2 NaN 8940 2751 11692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11694 54.532 NaN 1147300 35 0 112350 0.261 + 18238 MPDVDLHL 8 75 478.23169742748837 954.4488419217768 2 478.2317199707031 MULTI HCD FTMS 0 0 0 11692 645115.1875 0.8738772428474235 2 -0.029491424560546875 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 67.406 0 0 7.0623 7.0623 86.107 0 0 0 2.346368802282015 2.346368802282015 2.346368802282015 2.346368802282015 0 2.305462187404089 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[QD]|[EN]|[WG]|[KD]|[RS]}[RP][CS]H{I|L};[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[RP]HSC{I|L};[H{I|L}]WW[WQ];[YN][DV][KT]C{I|L} 7.0623;6.8165;5.325;2.2467;1.9004;1.5366;1.1214;0.094598 +;+;-;-;-;-;-;- + 440 NaN NaN 264295.4 NaN 8941 2751 11692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11695 54.536 NaN 892440 35 0 86653 0.261 + 9758 HYILHNSFF 9 89 589.2930832030781 1176.5716134729562 2 589.2937622070312 MULTI HCD FTMS 0 0 0 11692 433058.96875 0.28880961368304325 12 -0.22690963745117188 3 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 160.51597146486608 8.986712039288196E-09 1 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 98.351 0 0 8.3592 8.3592 87.261 0 0 0 0.2706445877503114 0.2706445877503114 0.2706445877503114 0.2706445877503114 0 2.4291746928241125 1.5228787452803376 1.0629529932484498 0.6139829889124311 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};HY{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVN[{I|L}T]H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.3592;8.3362;7.5535;7.5357;7.0547;7.0289;6.3571;6.2313;6.1449;5.5568 -;+;-;-;-;+;-;-;-;- + 1357 + NaN NaN 225703.5 NaN 8942 2751 11692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11696 54.539 NaN 244490 35 0 77750 0.264 + 5437 FIFDLPAHQK 10 48 405.88870973972695 1214.6442998193809 3 405.88916015625 MULTI HCD FTMS 0 0 0 11692 126290.796875 0.5258628586716051 4 -0.050933837890625 4 Unmodified _FIFDLPAHQK_ ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 10.315234532428624 0.4146267933501748 1 {I|L}{M(Oxidation (M))|F}D{I|L}E 5 6 34.208 0 0 2.8163 0 0 579.3123937125783 0 579.3123937125783 0 19.604093769761874 0 0 0 1.1989700043360187 0 0 0 {I|L}{M(Oxidation (M))|F}D{I|L}E 2.8163 - 38 NaN NaN 122216.7 NaN 8943 2751 11692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11697 54.543 NaN 266120 35 0 15422 0.261 + 2022 DDELLSRYF 9 79 579.2784307972964 NaN 0 579.2785034179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _DDELLSRYF_ REV__ENSG00000141736|ENST00000269571|ERBB2;REV__nc|ENSG00000141736|P04626-2|ERBB2;REV__nc|ENSG00000141736|P04626-3|ERBB2;REV__nc|ENSG00000141736|P04626-4|ERBB2;REV__nc|ENSG00000141736|P04626-5|ERBB2 7.910154910731844 0.25691533546754686 1 {M(Oxidation (M))|F}T{I|L}V 4 -1 18.175 0 0 1.5715 0 0 83.01477550462921 610.2636202447874 693.2783957494166 0 0 0 0 0 0 0 0.2742275032520141 0 {M(Oxidation (M))|F}T{I|L}V 1.5715 - 104 + NaN NaN 122856.2 NaN 8944 2751 11692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11698 54.546 NaN 306630 35 0 39275 0.262 + 18210 MPDLPEKL 8 65 471.7521049018219 941.4896568704438 2 471.752685546875 MULTI HCD FTMS 0 0 0 11692 136894.296875 0.19230613050495282 -11 0.24003982543945312 6 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 32.78568957990786 0.32360605643721263 1 MPD{I|L}[EP][K{I|L}] 8 0 + 68.505 0 0 7.2762 7.2762 95.589 0 0 0 62.84318117920506 4.56022414822435 4.56022414822435 68.50501891384965 0 1.610924374808178 1.6989700043360187 0 0 + + MPD{I|L}[EP][K{I|L}] 7.2762 + + 111 + NaN NaN 123223.3 NaN 8945 2751 11692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11700 54.551 NaN 73222 35 0 5899.2 0.326 -1 MPMQDIKMIL 10 42 634.3088200644604 NaN 0 634.3093872070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.189502756095605 0.3365986553207265 1 K 1 -1 6.9897 0 0 0.55185 0 0 391.2190062404457 744.2713106744749 1135.4903169149206 0 0 0 0 0 0 0 0 0 K 0.55185 + + 3 + NaN NaN 91916.7 NaN 8946 2752 11699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11702 54.557 NaN 470730 35 0 30672 0.327 + 26050 SPERMMALG 9 91 512.2342316561685 1022.453910379137 2 512.2344970703125 MULTI HCD FTMS 0 0 0 11701 235957.078125 0.7129573159072696 5 -0.06715774536132812 1 2 Oxidation (M) _SPERM(Oxidation (M))M(Oxidation (M))ALG_ ENST00000564218.5_1_16:31448362-31454203:-|nuORF 41.8396318013385 0.056899836730939755 1 SPEE{I|L}DA 7 5 76.763 0 0 7.5078 0 0 0 278.11216150455317 278.11216150455317 42.2895804737764 0 0 0 0 2.2302046884880937 1.5228787452803376 0.2302046884880938 0 SPEE{I|L}DA 7.5078 - 776 + NaN NaN 152620.9 NaN 8947 2753 11701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11703 54.561 NaN 407940 35 0 29601 0.261 + 27717 TASIVEQSL 9 67 474.2559577834773 946.4973626337546 2 474.2563781738281 MULTI HCD FTMS 0 0 0 11701 180275.640625 0.7782773457178034 5 -0.06715774536132812 2 Unmodified _TASIVEQSL_ ENSG00000165169|ENST00000378578|DYNLT3 63.960520009940105 0.0120409805053046 1 {[TV]|[{I|L}S]}[TA]EVQS{I|L} 9 4 + 53.649 0 0 5.6681 5.6681 88.413 0 0 0 10.153178901854432 14.973024840566467 10.153178901854432 10.153178901854432 0 1.5682503180159344 1.3010299956639813 1.5044321917401078 0 {[TV]|[{I|L}S]}[TA]EVQS{I|L};[TA]S{I|L}EVQS{I|L};[HV][HQ]VQS{I|L};{[RE]|[WV]}PY[RN]{I|L};[HV][HQ]V[AG]S{I|L};{[TV]|[{I|L}S]}Q[HV][HN]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KP]S{I|L} 5.6681;4.5954;2.4735;2.378;1.4949;0.89563;0.1632 -;-;-;-;-;-;- 376 NaN NaN 151475.3 NaN 8948 2753 11701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11704 54.565 NaN 73948 35 0 4869.6 0.261 -1 0 42 630.5055541992188 NaN 0 630.5055541992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97421 NaN 8949 2753 11701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11706 54.57 NaN 260850 35 0 27059 0.327 -1 YPESESIMM 9 72 551.7254607129465 NaN 0 551.72509765625 PEAK HCD FTMS 0 0 0 11705 91118.3046875 0.6761054969027525 1 -0.009357452392578125 1 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.13043271994793734 1 S{I|L} 2 -1 14.949 0 0 1.3572 0 0 605.2329210823399 293.06321130924067 898.2961323915806 0 0 0 0 0 1 0 0 0 S{I|L} 1.3572 + + 17 + NaN NaN 120723.8 NaN 8950 2754 11705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11707 54.574 NaN 487780 35 0 39031 0.261 + 32387 VYWEGIDEP 9 90 554.251606313836 1106.4886596944718 2 554.251953125 MULTI HCD FTMS 0 0 0 11705 64128.9453125 0.601043003196652 2 -0.0284576416015625 2 Unmodified _VYWEGIDEP_ ENSG00000124253|ENST00000319441|PCK1;nc|ENSG00000124253|P35558-2|PCK1 16.942295170755138 0.21397866736869717 1 VY 2 7 34.922 0 0 3.1561 0 0 0 841.3344667244963 841.3344667244963 -0.48963451112506107 0 -0.48963451112506107 0 0 0.3494850021680094 1.5228787452803376 0 0 + VY 3.1561 + + 852 + NaN NaN 157948.3 NaN 8951 2754 11705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11709 54.579 NaN 909230 35 0 113600 0.327 + 19667 NVQGPDWHL 9 81 533.2596216081148 1064.5046902830295 2 533.26025390625 MULTI HCD FTMS 0 0 0 11708 455186.125 0.5433271716777305 5 -0.09109878540039062 1 Unmodified _NVQGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 122.17920374332846 0.0010792739174387011 1 NVQG[DP]WH{I|L} 9 0 + 89.038 0 0 8.3642 8.3642 94.001 0 0 0 75.30419190453054 10.642492736872597 10.642492736872597 13.455612550363796 0 2.4876954943324545 2 0.7059771852360797 0.4247425010840047 + + NVQG[DP]WH{I|L};NV[AG]G[DP]WH{I|L};{[NV]|[RG]}QG[DP]WH{I|L};{[NV]|[RG]}[AG]G[DP]WH{I|L};[PA][DN]{[NV]|[RG]}WH{I|L};[EP][NG]{[NV]|[RG]}WH{I|L} 8.3642;7.1002;6.1562;5.2912;1.8428;1.7254 +;-;+;-;-;- + 576 + NaN NaN 223082.1 NaN 8952 2755 11708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11710 54.583 NaN 392280 35 0 24540 0.261 + 10649 IPVEEHFQTL 10 74 606.8167066352527 1211.6188603373053 2 606.8171997070312 MULTI HCD FTMS 0 0 0 11708 83672.6640625 0.24606689556109615 -4 0.050933837890625 2 Unmodified _IPVEEHFQTL_ ENSG00000105186|ENST00000306065|ANKRD27 74.19965305603844 0.012609120674105788 1 [{I|L}P]VEEH{M(Oxidation (M))|F}QT{I|L} 10 0 + 57.771 0 0 4.768 4.768 81.338 0 0 0 2.8047166798592116 16.53212513775344 2.8047166798592116 0.822194502297009 0 1.2059771852360797 0 0.3807196863200844 0 + + [{I|L}P]VEEH{M(Oxidation (M))|F}QT{I|L};[{I|L}P]D{I|L}EH{M(Oxidation (M))|F}QT{I|L};[{I|L}T]Q{M(Oxidation (M))|F}{[QS]|[NT]}{M(Oxidation (M))|F}QT{I|L};[{I|L}P]VEEH{M(Oxidation (M))|F}[AG]T{I|L};[{I|L}P]D{I|L}EH{M(Oxidation (M))|F}[AG]T{I|L};[{I|L}T]Q{M(Oxidation (M))|F}[QA]YQT{I|L};[{I|L}T]Q{M(Oxidation (M))|F}{[QS]|[NT]}{M(Oxidation (M))|F}[AG]T{I|L};{[TV]|[{I|L}S]}AA{M(Oxidation (M))|F}{[QS]|[NT]}{M(Oxidation (M))|F}QT{I|L};[{I|L}T][AG]{M(Oxidation (M))|F}{[QS]|[NT]}{M(Oxidation (M))|F}QT{I|L};[{I|L}T]Q{M(Oxidation (M))|F}[QA]Y[AG]T{I|L} 4.768;4.7002;4.5366;4.0117;3.9438;3.8391;3.7802;3.6748;3.4917;3.0827 +;-;-;-;-;-;-;-;-;- + 1155 NaN NaN 148288.6 NaN 8953 2755 11708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11711 54.587 NaN 607380 35 0 76131 0.261 + 24641 RYLQTLTTI 9 89 554.821573921432 1107.628594909664 2 554.8222045898438 MULTI HCD FTMS 0 0 0 11708 89393 0.04094732222935777 -7 0.10205841064453125 3 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 38.61474834105838 0.07170385841135779 1 [Y{I|L}]RQT{I|L}TT{I|L} 9 2 + 68.449 0 0 6.1798 6.1798 88.226 0 0 0 14.690287068896026 52.216642273092134 14.690287068896026 9.208187539523749 0 1.5189301784845295 1.2218487496163564 0.5 0 [Y{I|L}]RQT{I|L}TT{I|L};[Y{I|L}]R[AG]T{I|L}TT{I|L};[Y{I|L}]RQTT{I|L}T{I|L};[Y{I|L}]R[AG]TT{I|L}T{I|L} 6.1798;5.3484;5.0973;4.2659 -;-;-;- 1355 NaN NaN 181653.4 NaN 8954 2755 11708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11712 54.59 NaN 255300 35 0 25707 0.261 -1 YPESESIMM 9 62 551.7255586323867 1101.4365643315732 2 551.7266845703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.11819662193267319 1 {M(Oxidation (M))|F}M 2 -1 25.969 0 0 2.3577 0 0 805.3494308400153 0 805.3494308400153 0 7.171210992238812 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}M 2.3577 + + 44 NaN NaN 122612.4 NaN 8955 2755 11708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11713 54.593 NaN 296240 35 0 22964 0.261 + 3113 EALPLDHTL 9 72 504.77230646161325 NaN 0 504.7726745605469 PEAK HCD FTMS 0 0 0 11708 30811.654296875 0.4194195017342473 1 -0.019100189208984375 5 Unmodified _EALPLDHTL_ ENSG00000104231|ENST00000220669|ZFAND1;ENST00000519338.1_1_8:82614932-82615299:-|nuORF;ENST00000519464.5_1_8:82614932-82621025:-|nuORF;nc|ENSG00000104231|Q8TCF1-2|ZFAND1;nc|ENSG00000104231|Q8TCF1-3|ZFAND1 14.838274106304384 0.2220448417561729 1 {I|L}P{I|L} 3 6 13.232 0 0 1.3133 0 0 200.0831170593538 481.20601015847217 681.289127217826 0 0 0 0 0 0.3054621874040891 0 0 0 + {I|L}P{I|L} 1.3133 + + 31 + NaN NaN 130332.2 NaN 8956 2755 11708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11715 54.598 NaN 575190 35 0 32566 0.411 + 34298 YPDSHLPTL 9 107 521.7637531121 1041.5129532909998 2 521.7637939453125 MULTI HCD FTMS 0 0 0 11714 84641.1328125 0.13903713524338462 18 -0.4546394348144531 1 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 107.99703571036002 0.003269392969029945 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L} 9 0 + 45.135 0 0 4.3336 4.3336 87.895 0 0 0 9.931080979368275 13.25856402697184 9.931080979368275 17.325058794069538 0 1.5114393726401687 1.0969100130080565 0.6989700043360187 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};[DP]Y[HS]{I|L}PT{I|L};{I|L}{M(Oxidation (M))|F}EE{[HG]|PP}PT{I|L};{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}DRY 4.3336;2.6701;2.0159;1.9615 +;-;-;- + 817 NaN NaN 255378.9 NaN 8957 2756 11714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11717 54.605 NaN 1236600 35 0 250300 0.327 + 26010 SPEEIDAQL 9 62 501.2431019093356 1000.4716508854713 2 501.243408203125 MULTI HCD FTMS 0 0 0 11716 964808.375 0.4067478644657729 8 -0.20831680297851562 1 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 99.75527289724121 0.004270341300239591 1 {[DA]|[EG]}Q{I|L}QDAQ 8 5 77.516 0 0 7.748 0 0 0 128.07175483752044 128.07175483752044 53.263969149163515 0 0 0 0 1.4247425010840047 1.3010299956639813 1.8411290632962718 0.2742275032520141 {[DA]|[EG]}Q{I|L}QDAQ 7.748 - 736 NaN NaN 273964 NaN 8958 2757 11716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11718 54.61 NaN 639030 35 0 59808 0.261 + 28153 TIVNILTNR 9 94 522.3139869197836 1042.613420906367 2 522.3143310546875 MULTI HCD FTMS 0 0 0 11716 206599.40625 0.40322098326260947 -5 0.05483245849609375 2 Unmodified _TIVNILTNR_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 110.79276546118962 0.0028129822227594098 1 [{I|L}T]VN{I|L}{I|L}T[RN] 9 0 + 80.587 0 0 7.7293 7.7293 94.129 0 0 0 18.459924024478127 62.382535782692884 18.459924024478127 20.674100046527357 0 2.805462187404089 2 0.5994850021680094 1.1465912507003613 + + [{I|L}T]VN{I|L}{I|L}T[RN];[{I|L}T]VGG{I|L}{I|L}T[RN];[{I|L}T]VN{I|L}[RN]T{I|L};[{I|L}T]P[KT]{I|L}T[RN];[{I|L}T]VGG{I|L}[RN]T{I|L};[TP][KT]{I|L}{I|L}T[RN];[{I|L}T]VN{[RE]|[WV]}[KA]{I|L};{[NV]|[RG]}[{I|L}T]{I|L}{I|L}T[RN];[{I|L}T]P[KT][RN]T{I|L};[TP]{I|L}[KT]{I|L}T[RN] 7.7293;5.7464;5.4055;5.4044;3.9663;3.823;3.3447;3.3215;3.0805;2.8377 +;-;-;-;-;-;-;-;-;- + 702 NaN NaN 183382.3 NaN 8959 2757 11716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11719 54.613 NaN 327320 35 0 12170 0.261 + 6009 FPDRIMNTF 9 83 578.7764311978499 1155.5383094624997 2 578.776611328125 MULTI HCD FTMS 0 0 0 11716 130706.71875 0.04898599838882952 -30 0.6912803649902344 3 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 42.312485326615175 0.05472917415473307 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 2 + 65.812 0 0 5.6954 5.6954 85.869 0 0 0 21.751736484954378 48.82245020145518 21.751736484954378 7.403626894942441 0 0.7742275032520141 1.6989700043360187 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD[HV][TP]NVM 5.6954;5.0547;4.8985;4.2578;1.0057 -;+;-;-;- + 363 NaN NaN 129036.6 NaN 8960 2757 11716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11720 54.617 NaN 360660 35 0 29563 0.261 + 18654 MYIARQLSF 9 85 572.7946702571303 1143.5747875810605 2 572.7958984375 MULTI HCD FTMS 0 0 0 11716 40369.80078125 0.3448776437711968 3 -0.06454086303710938 4 Oxidation (M) _M(Oxidation (M))YIARQLSF_ ENSG00000064932|ENST00000361757|SBNO2;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;nc|ENSG00000139697|A3KN83-2|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 45.69961567697781 0.039180348357221985 1 {I|L}{I|L}{I|L}E{I|L}S{M(Oxidation (M))|F} 7 5 30.894 0 0 2.7015 0 0 310.09910781074376 0 310.09910781074376 0 5.611002004102964 0 0 0 1.2614393726401687 0 0.3252574989159953 0 {I|L}{I|L}{I|L}E{I|L}S{M(Oxidation (M))|F} 2.7015 - 438 NaN NaN 138155 NaN 8961 2757 11716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11721 54.62 NaN 86935 35 0 6973.9 0.262 + 22439 QQFDWNQFRAF 11 50 496.23351141623993 NaN 0 496.23370361328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QQFDWNQFRAF_ ENSG00000171316|ENST00000423902|CHD7 3.8459078486920597 0.3312104104652976 1 {M(Oxidation (M))|F} 1 10 5.4846 0 0 0.55374 0 0 172.10877536858624 668.2562349908811 840.3650103594673 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.55374 + + 1 + NaN NaN 101833.6 NaN 8962 2757 11716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11723 54.625 NaN 693870 35 0 167850 0.327 + 13980 KYSKISKDYF 10 61 426.8966624601658 1277.6681579806975 3 426.8973388671875 MULTI HCD FTMS 0 0 0 11722 212445.65625 0.8621703970359116 1 -0.022678375244140625 1 Unmodified _KYSKISKDYF_ tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 8.745405648335112 0.42901288225909884 1 Y{M(Oxidation (M))|F} 2 8 28.711 0 0 2.2472 0 0 949.5260628748662 0 949.5260628748662 0 23.138181262758266 0 0 0 0.9247425010840047 0 0 0 + Y{M(Oxidation (M))|F} 2.2472 + + 22 + NaN NaN 183167.7 NaN 8963 2758 11722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11724 54.629 NaN 594530 35 0 47767 0.261 + 29845 VETKNCITF 9 98 527.7650272208008 NaN 0 527.7752685546875 PEAK HCD FTMS 0 0 0 11722 16417.41796875 0.5964070061655625 3 -0.07140350341796875 2 Unmodified _VETKNCITF_ REV__CPNE5|p.H216N|1|0.26|ENSG00000124772|chr6:36775052-36775052|G/T|missense_variant 16.942295170755138 0.2079222001251384 1 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 6 -1 25.648 0 0 2.4345 0 0 131.07653044595776 215.1037539117797 346.1802843577375 0 0 0 0 0 0 0 1.024227503252014 0 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 2.4345 - 492 + NaN NaN 167496.7 NaN 8964 2758 11722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11725 54.633 NaN 266540 35 0 53669 0.261 + 27308 SYQKVMALW 9 53 571.2893161582517 1140.5640793833034 2 571.2899780273438 MULTI HCD FTMS 0 0 0 11722 92676.328125 0.4851691863414136 -9 0.13839340209960938 3 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 49.55428908609986 0.03219431099695407 1 {M(Oxidation (M))|F}A{I|L}W 4 5 51.938 0 0 4.5537 0 0 605.3181209866221 0 605.3181209866221 0 32.23320034371433 0 0 0 2 0 0 0 + {M(Oxidation (M))|F}A{I|L}W 4.5537 + + 56 + NaN NaN 124988.1 NaN 8965 2758 11722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11726 54.636 NaN 233650 35 0 17933 0.262 + 21317 PSLGVEFIS 9 65 474.75770907662655 NaN 0 474.7579650878906 PEAK HCD FTMS 0 0 0 11722 60968.3671875 0.6826397259626907 1 -0.022678375244140625 4 Unmodified _PSLGVEFIS_ ENSG00000213903|ENST00000345363|LTB4R 15.847184025352803 0.21527282152051216 1 Q 1 9 10.242 0 0 1.081 0 0 219.1289056551205 597.2885612400677 816.4174668951882 0 0 0 0 0 0.3252574989159953 0 0 0 Q 1.081 - 44 + NaN NaN 124408.4 NaN 8966 2758 11722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11727 54.639 NaN 250000 35 0 33159 0.261 + 18351 MPLLRQEEL 9 64 564.8077959497971 1127.601038966394 2 564.8076782226562 MULTI HCD FTMS 0 0 0 11722 46517.2890625 0.19353189112052582 10 -0.2609405517578125 5 Unmodified _MPLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 21.590151480376914 0.17382222009858564 1 MP{I|L}{I|L}K 5 5 29.412 0 0 2.6084 0 0 0 542.2357271783811 542.2357271783811 8.26606256887672 0 0 0 0 0.5 0 0 0 MP{I|L}{I|L}K 2.6084 - 111 + NaN NaN 116586.1 NaN 8967 2758 11722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11728 54.643 NaN 117590 35 0 7008.5 0.261 -1 MYSFVNDKF 9 56 583.7629216825127 1165.5112904318253 2 583.763427734375 MULTI HCD FTMS 0 0 0 11722 17855.58984375 0.14235151523456077 5 -0.13026046752929688 6 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 16.149105407346934 0.22083165093524068 1 WS[YE] 4 -1 25.445 0 0 2.1832 0 0 582.2867909162125 0 582.2867909162125 0 8.455612550363796 0 0 0 0.9247425010840047 0 0 0 WS[YE] 2.1832 - 46 NaN NaN 103570 NaN 8968 2758 11722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11730 54.647 NaN 2023700 35 0 383840 0.326 + 13162 KYLQSTISF 9 97 543.7953900880038 1085.5762272428076 2 543.795654296875 MULTI HCD FTMS 0 0 0 11729 1275794.875 0.8360724816414165 2 -0.048725128173828125 1 Unmodified _KYLQSTISF_ ENSG00000100038|ENST00000357179|TOP3B;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;nc|ENSG00000100038|O95985-2|TOP3B;nc|ENSG00000100038|O95985-3|TOP3B;TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant 136.39213081522345 0.00021731600835925866 1 KY{I|L}QST{I|L}S{M(Oxidation (M))|F} 9 0 + 105.71 0 0 9.7376 9.7376 93.6 0 0 0 40.43424569904134 16.478174818886373 16.478174818886373 9.208187539523749 0 2.8494850021680094 0 1.8620155761587909 0 + + KY{I|L}QST{I|L}S{M(Oxidation (M))|F};KY{I|L}[AG]ST{I|L}S{M(Oxidation (M))|F};[YK]{I|L}QST{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GKST{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}GKST{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}K[YQ]T{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}TQYK{I|L}S{M(Oxidation (M))|F};KY{I|L}{[CA]|SS}AA{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}TQY{I|L}KS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}G{[MG]|[TS]}K{I|L}S{M(Oxidation (M))|F} 9.7376;8.8893;7.9264;7.303;7.0769;6.7145;6.3144;5.879;5.7386;5.5747 +;-;+;-;-;-;-;-;-;- + 3325 + NaN NaN 402094.6 NaN 8969 2759 11729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11731 54.652 NaN 598650 35 0 53902 0.261 + 6217 FPEQIAEKL 9 91 537.7949039085173 1073.5752548838345 2 537.795654296875 MULTI HCD FTMS 0 0 0 11729 190866.125 0.33817048128304344 18 -0.47371673583984375 2 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 88.36371040165146 0.004568843997105255 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}AEK{I|L} 9 0 + 69.288 0 0 6.454 6.454 86.676 0 0 0 1.233114327805211 41.148525316818095 1.233114327805211 6.189565382374589 0 2.111407999752478 1.5228787452803376 0.7134679910804405 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}AEK{I|L};{M(Oxidation (M))|F}PEQ{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}AEK{I|L};{M(Oxidation (M))|F}PE[AG]{I|L}AEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}A[K{I|L}]E;[EP]{M(Oxidation (M))|F}Q{I|L}A[K{I|L}]E;[TP][PG][YV]AEK{I|L};[{M(Oxidation (M))|F}V]E[PA]AAEK{I|L};[TP]V[{M(Oxidation (M))|F}V]S[KA]PE;[{M(Oxidation (M))|F}V]E[PA]S[PS]K{I|L} 6.454;5.8775;5.5677;5.0197;4.9952;4.1088;2.5383;1.5539;0.59544;0.32855 +;+;-;-;-;-;-;-;-;- + 619 NaN NaN 176705.4 NaN 8970 2759 11729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11732 54.655 NaN 259580 35 0 16629 0.261 + 6372 FPGEAERVAF 10 79 561.7829852016356 1121.551417470071 2 561.7853393554688 MULTI HCD FTMS 0 0 0 11729 106757.671875 0.4498196768799294 12 -0.3234748840332031 3 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 24.881564428377168 0.27837825820855233 1 {M(Oxidation (M))|F}P{[DA]|[EG]}AEA[RV]{M(Oxidation (M))|F} 10 2 + 46.163 0 0 4.116 4.116 86.218 0 0 0 23.460244700585022 3.243719559664413 3.243719559664413 11.237125054200234 0 1.274227503252014 0 0.4247425010840047 0 {M(Oxidation (M))|F}P{[DA]|[EG]}AEA[RV]{M(Oxidation (M))|F};{M(Oxidation (M))|F}D[PA]AEA[RV]{M(Oxidation (M))|F} 4.116;3.1141 -;- 139 + NaN NaN 135881.1 NaN 8971 2759 11729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11733 54.659 NaN 145110 35 0 9936.1 0.261 + 35711 YYLHVQSML 9 64 585.2865567466519 1168.5585605601036 2 585.2866821289062 MULTI HCD FTMS 0 0 0 11729 76111.96875 0.8130828602682681 1 -0.022705078125 4 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ ENSG00000176994|ENST00000406438|SMCR8 47.748688679222035 0.03472022231463587 1 QS{M(Oxidation (M))|F}{I|L} 4 5 43.22 0 0 3.6985 0 0 675.3414091167053 0 675.3414091167053 0 10.019797293635548 0 0 0 0.8494850021680094 0 0.7302046884880937 0 + QS{M(Oxidation (M))|F}{I|L} 3.6985 + + 58 NaN NaN 98807.4 NaN 8972 2759 11729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11734 54.662 NaN 189790 35 0 27861 0.261 + 29117 TYHPGVPVF 9 49 508.76371344365737 1015.5128739541148 2 508.7642517089844 MULTI HCD FTMS 0 0 0 11729 41773.63671875 0.5791583386650957 1 -0.022705078125 5 Unmodified _TYHPGVPVF_ ENSG00000110172|ENST00000320585|CHORDC1;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 23.1484247019978 0.1603590852062899 1 A{M(Oxidation (M))|F} 2 8 23.583 0 0 2.3223 0 0 779.3975613093867 0 779.3975613093867 0 4.655593552960937 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 2.3223 - 31 + NaN NaN 109777.6 NaN 8973 2759 11729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11735 54.665 NaN 278650 35 0 34500 0.261 + 17947 MITDLEERL 9 69 568.2866526770156 1134.558752420831 2 568.2872314453125 MULTI HCD FTMS 0 0 0 11729 100338.015625 0.07368516895086151 30 -0.8049964904785156 6 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 55.23464941255904 0.024247875903973527 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 95.411 0 0 8.4095 8.4095 88.813 0 0 0 17.130544153866737 85.94720941673181 17.130544153866737 3.4509804001425692 0 2 2 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L} 8.4095;8.1054;5.2368 -;+;- + 361 NaN NaN 126649.8 NaN 8974 2759 11729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11737 54.67 NaN 806430 35 0 79920 0.327 + 18239 MPDVDLHL 8 83 478.23169742748837 954.4488419217768 2 478.2315673828125 MULTI HCD FTMS 0 0 0 11736 453339.71875 0.6140969414000603 11 -0.3007698059082031 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 75.029 0 0 7.8609 7.8609 92.99 0 0 0 4.6040937697618745 54.57116601236436 4.6040937697618745 12.882418650521359 0 2.305462187404089 0 1.860924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}]WW[WQ];[YN][DV][KT]C{I|L} 7.8609;6.5112;4.9736;1.3059;0.32703 +;+;-;-;- + 371 NaN NaN 206290.7 NaN 8975 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11738 54.675 NaN 590800 35 0 60519 0.261 + 9759 HYILHNSFF 9 75 589.2930832030781 1176.5716134729562 2 589.2935791015625 MULTI HCD FTMS 0 0 0 11736 245994.984375 0.16405552484083039 21 -0.5558586120605469 2 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 106.94017166704063 0.003441928997083001 1 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 102.94 0 0 8.7493 8.7493 92.633 0 0 0 15.132921654783217 14.973024840566467 14.973024840566467 9.208187539523749 0 2.385151878060192 1.5228787452803376 0.9247425010840047 0 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]{M(Oxidation (M))|F}H{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H;HYV[RV][C(Carbamidomethyl (C))K]SE 8.7493;7.9667;7.4631;7.2979;6.3854;6.3835;6.2182;4.8958;4.0084;3.476 +;-;-;+;-;-;-;-;-;- + 570 NaN NaN 179003.3 NaN 8976 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11739 54.678 NaN 534440 35 0 60789 0.261 + 32372 VYVQNVVKL 9 86 531.3214729674228 1060.6283930016455 2 531.3218994140625 MULTI HCD FTMS 0 0 0 11736 209571.078125 0.08770722173622954 13 -0.35982513427734375 3 Unmodified _VYVQNVVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 99.79894945604345 0.0042691968066200965 1 VYVQNVVK{I|L} 9 0 + 83.611 0 0 7.8832 7.8832 86.675 0 0 0 0.7082530717588753 0.7082530717588753 0.7082530717588753 0.7082530717588753 0 2.829689690656103 1.5228787452803376 0 0.3252574989159953 + + VYVQNVVK{I|L};[YV]VQNVVK{I|L};VYVQGGVVK{I|L};VYV[AG]NVVK{I|L};[YV]VQGGVVK{I|L};[YV]V[AG]NVVK{I|L};[YV]QVNVVK{I|L};VYV[AG]GGVVK{I|L};[YV][AG]VNVVK{I|L};[YV]QVGGVVK{I|L} 7.8832;7.8164;7.015;7.015;6.9482;6.9482;6.7773;6.1509;5.9091;5.9091 +;+;-;-;-;-;-;-;-;- + 1756 + NaN NaN 166720.8 NaN 8977 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11740 54.681 NaN 154330 35 0 41064 0.261 + 21385 PVFGDGTNVI 10 51 509.76392059353134 1017.5132882538627 2 509.764404296875 MULTI HCD FTMS 0 0 0 11736 50019.8125 0.10515999668877218 17 -0.45101165771484375 4 Unmodified _PVFGDGTNVI_ ENSG00000140057|ENST00000267584|AK7 9.38312468134398 0.42334543440173333 1 V{I|L} 2 8 24.776 0 0 2.435 0 0 787.3497329980277 0 787.3497329980277 0 9.291746928241125 0 0 0 0.3807196863200844 0 0 0 + V{I|L} 2.435 + + 27 NaN NaN 111655.9 NaN 8978 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11741 54.685 NaN 239910 35 0 21377 0.261 + 3106 EALGPGPPASL 11 60 504.77230646161325 NaN 0 504.7712707519531 PEAK HCD FTMS 0 0 0 11736 13589.85546875 0.18499008052033267 6 -0.1732177734375 5 Unmodified _EALGPGPPASL_ ENSG00000134698|ENST00000373210|AGO4 11.494710602746466 0.3095129597915146 1 A 1 10 3.9794 0 0 0.39497 0 0 164.06638919100152 769.4005831354124 933.466972326414 0 0 0 0 0 0 0 0 0 + A 0.39497 + + 5 + NaN NaN 120826.1 NaN 8979 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11742 54.688 NaN 218550 35 0 26281 0.261 + 878 AYAIIKEEL 9 66 525.2977527119031 1048.580952490606 2 525.2974853515625 MULTI HCD FTMS 0 0 0 11736 35437.4453125 0.47666973377912253 4 -0.11432647705078125 6 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 32.78568957990786 0.09846250359632436 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[HC]{I|L} 7 4 42.752 0 0 4.0771 0 0 0 274.199748715971 274.199748715971 16.809866658179118 0 0 0 0 1.274227503252014 1.6989700043360187 0.3054621874040891 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[HC]{I|L} 4.0771 - 163 NaN NaN 119516.3 NaN 8980 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11743 54.691 NaN 95660 35 0 11504 0.261 + -1 SDGVRGVMKN 10 48 539.768310546875 NaN 0 539.768310546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _SDGVRGVM(Oxidation (M))KN_ REV__ENSG00000162174|ENST00000415229|ASRGL1;REV__ENST00000534183.5_1_11:62105600-62156860:+|nuORF;REV__nc|ENSG00000162174|Q7L266-2|ASRGL1 1.3295316138638542 0.339046394236575 1 D 1 -1 1.9897 0 0 0.18483 0 0 553.2218674787124 405.1981600397094 958.4200275184219 0 0 0 0 0 0 0 0 0 D 0.18483 + + 3 + NaN NaN 92642 NaN 8981 2760 11736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11745 54.696 NaN 804350 35 0 121950 0.327 + 18211 MPDLPEKL 8 72 471.7521049018219 941.4896568704438 2 471.7520751953125 MULTI HCD FTMS 0 0 0 11744 596351.375 0.8377414396764514 -1 0.026020050048828125 1 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 62.57269311338072 0.04993395348098847 1 MPD{I|L}PE[K{I|L}] 8 0 + 76.819 0 0 8.1593 8.1593 95.936 0 0 0 39.550569117629614 12.790207931530219 12.790207931530219 35.887868110932054 0 1.9489700043360187 1.5228787452803376 0.3807196863200844 0.28872548999643577 + + MPD{I|L}PE[K{I|L}];{NN|[MP]|[D{I|L}]|[EV]}D{I|L}[K{I|L}][EP];M{I|L}[DP]PE[K{I|L}];{I|L}M[DP]PE[K{I|L}];[DP]M{I|L}[K{I|L}][EP];[DP]{I|L}[EP]K{I|L}M;[EP]V[EP]K{I|L}M;[DP]{I|L}M[K{I|L}][EP];[EP]VM[K{I|L}][EP] 8.1593;4.3475;3.4834;2.7592;1.9443;1.8407;1.6854;1.0935;0.93833 +;-;-;-;-;-;-;-;- + 218 + NaN NaN 201673.9 NaN 8982 2761 11744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11746 54.701 NaN 480510 35 0 87258 0.261 + 27384 SYSQSSNLF 9 73 516.7358005723795 1031.457048211559 2 516.7359008789062 MULTI HCD FTMS 0 0 0 11744 193094.765625 1 0 0 2 Unmodified _SYSQSSNLF_ ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF 87.25819977447905 0.004597812622239197 1 {[{M(Oxidation (M))|F}C]|[YS]}SQSSN{I|L}{M(Oxidation (M))|F} 9 0 + 87.846 0 0 8.5167 8.5167 92.295 0 0 0 2.632192780232785 65.45548148589354 2.632192780232785 9.208187539523749 0 2.7302046884880937 0 1.372363747448347 0.4247425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}SQSSN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG]SSN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQSSGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG]SSGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQS[WK]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG]S[WK]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KT]SQDG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[KT]QDG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQ[KT]DG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[KT]{[WN]|[YH]}{M(Oxidation (M))|F} 8.5167;7.624;7.624;6.3237;5.4191;4.5211;4.3114;3.8774;3.7953;3.6445 +;-;-;-;-;-;-;-;-;- + 569 NaN NaN 160545.1 NaN 8983 2761 11744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11747 54.704 NaN 384180 35 0 46849 0.261 -1 RRMYNLFWRHF 11 81 547.9443518901178 1640.811226270553 3 548.2830200195312 MULTI HCD FTMS 0 0 0 11744 58385.81640625 0.16943539359315507 18 -0.4807014465332031 3 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 0.4545168274142398 0.41692731010159206 1 Y{M(Oxidation (M))|F} 2 -1 29.222 0 0 1.7809 0 0 1312.666489921162 0 1312.666489921162 0 1.419824831064954 0 0 0 0.8252574989159953 0 0 0 Y{M(Oxidation (M))|F} 1.7809 - 853 NaN NaN 144041.9 NaN 8984 2761 11744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11748 54.707 NaN 173960 35 0 16436 0.261 + 27718 TASIVEQSL 9 61 474.2559577834773 946.4973626337546 2 474.25579833984375 MULTI HCD FTMS 0 0 0 11744 57035.83984375 0.24623239107892914 13 -0.35662078857421875 4 Unmodified _TASIVEQSL_ ENSG00000165169|ENST00000378578|DYNLT3 24.990960013464015 0.14443998892849796 1 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}EVQ{[TV]|[{I|L}S]} 8 5 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} + + 31.604 1.7339 0.66918 3.339 3.339 59.494 0 0 0 0 16.11941264025134 0 0 0 1.3494850021680094 0 0.3494850021680094 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}EVQ{[TV]|[{I|L}S]} 3.339 - 173 + NaN NaN 109916.3 NaN 8985 2761 11744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11749 54.711 NaN 286420 35 0 43901 0.261 + 18352 MPLLRQEEL 9 72 564.8077959497971 1127.601038966394 2 565.29150390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MPLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 14.405379775768559 0.2358970535022398 1 MP{I|L}{I|L} 4 5 19.213 0 0 1.7039 0 0 0 670.3182134239232 670.3182134239232 2.8380967331202775 0 0 0 0 0.3807196863200844 0 0 0 + MP{I|L}{I|L} 1.7039 + + 106 + NaN NaN 123855.5 NaN 8986 2761 11744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11750 54.714 NaN 229830 35 0 20631 0.261 + -1 LYITHECL 8 75 524.7601354861423 1047.5057180390845 2 524.7612915039062 MULTI HCD FTMS 0 0 0 11744 49069.24609375 0.5756586948898618 4 -0.11775588989257812 6 Carbamidomethyl (C) _LYITHEC(Carbamidomethyl (C))L_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|81|3|sense 26.34127834903884 0.3999841173197873 1 [Y{I|L}]{I|L} 3 -1 35.062 0 0 3.3472 0 0 0 655.2534902121629 655.2534902121629 9.655593552960937 0 0 0 0 1 2 0 0 [Y{I|L}]{I|L} 3.3472 + + 128 NaN NaN 122102.6 NaN 8987 2761 11744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11752 54.719 NaN 3822400 35 0 677460 0.327 + 24642 RYLQTLTTI 9 107 554.821573921432 1107.628594909664 2 554.8220825195312 MULTI HCD FTMS 0 0 0 11751 2183122 1 0 0 1 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 117.76058876431921 0.001675465467887476 1 [YR]{I|L}QT{I|L}TT{I|L} 9 0 + 88.408 0 0 7.9817 7.9817 90.353 0 0 0 2.995587109089044 11.191577868965155 2.995587109089044 8.604159301997 0 2.524227503252014 0 1.7302046884880937 0 + + [YR]{I|L}QT{I|L}TT{I|L};[{I|L}T][VP]HN{I|L}TT{I|L};[PS]{I|L}{I|L}HN{I|L}TT{I|L};[YR]{I|L}[AG]T{I|L}TT{I|L};[{I|L}T][VP]HQVTT{I|L};[PS]{I|L}{I|L}HQVTT{I|L};[YR]{I|L}QTT{I|L}T{I|L};H[VP]{I|L}TQVTT{I|L};[VP]VHQT{I|L}TT{I|L};H{I|L}TVPN{I|L}TT{I|L} 7.9817;7.2049;7.1962;7.1504;6.9729;6.9642;6.8313;6.8222;6.734;6.6368 +;-;-;-;-;-;-;-;-;- + 9335 NaN NaN 662121.6 NaN 8988 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11753 54.723 NaN 489260 35 0 35775 0.261 + 10650 IPVEEHFQTL 10 78 606.8167066352527 1211.6188603373053 2 606.8170776367188 MULTI HCD FTMS 0 0 0 11751 183006.40625 0.5381903248603797 3 -0.0949859619140625 2 Unmodified _IPVEEHFQTL_ ENSG00000105186|ENST00000306065|ANKRD27 100.7086487251713 0.0001804935997887888 1 {I|L}PVEEH{M(Oxidation (M))|F}QT{I|L} 10 0 + 77.136 0 0 6.3664 6.3664 85.319 0 0 0 20.038989274674513 3.5068641369210667 3.5068641369210667 3.5068641369210667 0 2.9336068845642203 1.6989700043360187 1.9049471895720984 0.28872548999643577 + + {I|L}PVEEH{M(Oxidation (M))|F}QT{I|L};[{I|L}P]VEEH{M(Oxidation (M))|F}QT{I|L};[{I|L}P]D{I|L}EH{M(Oxidation (M))|F}QT{I|L};[{I|L}P]VEEH{M(Oxidation (M))|F}[AG]T{I|L};[{I|L}P]D{I|L}EH{M(Oxidation (M))|F}[AG]T{I|L};[{I|L}T]Q{M(Oxidation (M))|F}{[QS]|[NT]}{M(Oxidation (M))|F}QT{I|L};{I|L}PVQ{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{I|L}PV{M(Oxidation (M))|F}{[YC]|[HE]}[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{I|L}T]Q{M(Oxidation (M))|F}{[QS]|[NT]}{M(Oxidation (M))|F}[AG]T{I|L};[{I|L}P]N{[QD]|[EN]|[WG]|[KD]|[RS]}{[MG]|[TS]}EVP{I|L} 6.3664;6.077;6.057;5.3206;5.3006;4.1233;3.5477;3.4824;3.3669;3.3436 +;+;-;-;-;-;-;-;-;- + 1210 + NaN NaN 165702.6 NaN 8989 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11754 54.727 NaN 617330 35 0 64193 0.263 + 33918 YLQDNHLFFSL 11 72 466.2346415801483 1395.682095340645 3 466.2349548339844 MULTI HCD FTMS 0 0 0 11751 173788.15625 0.7479629210200835 1 -0.0360870361328125 3 Unmodified _YLQDNHLFFSL_ REV__ENSG00000136011|ENST00000388887|STAB2;REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant 15.538449434065043 0.3216953923945805 1 {I|L}YS 3 -1 43.461 0 0 3.1139 0 0 0 1029.4785680526284 1029.4785680526284 8.723637474483468 0 0 0 0 0.7302046884880937 1.3979400086720375 0.9247425010840047 0 {I|L}YS 3.1139 - 105 + NaN NaN 172497.8 NaN 8990 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11755 54.73 NaN 465080 35 0 32375 0.261 + 18472 MPYLEHESF 9 90 576.7551828070302 1151.4958126808604 2 576.7554931640625 MULTI HCD FTMS 0 0 0 11751 241811.671875 1 0 0 4 Unmodified _MPYLEHESF_ ENSG00000097046|ENST00000234626|CDC7 133.70201269244603 0.0003804610509361063 1 MPY{I|L}E 5 4 85.618 0 0 7.4353 0 0 0 515.1898287408811 515.1898287408811 42.57007180900061 0 0 0 0 1.555462187404089 2 1.5114393726401687 0 + MPY{I|L}E 7.4353 + + 400 + NaN NaN 160734 NaN 8991 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11756 54.734 NaN 364190 35 0 32816 0.261 + 12945 KYIDQGIAEL 10 74 575.311413193111 1148.6082734530219 2 575.3121948242188 MULTI HCD FTMS 0 0 0 11751 149878.453125 0.7878020467926552 -1 0.022769927978515625 5 Unmodified _KYIDQGIAEL_ ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 48.07275321834293 0.08479850339886455 1 DQG{I|L}AE{I|L} 7 3 69.245 0 0 6.0286 0 0 404.24202162910314 0 404.24202162910314 0 57.14943685577518 0 0 0 2.274227503252014 0 0.3807196863200844 0 + DQG{I|L}AE{I|L} 6.0286 + + 471 NaN NaN 135756.2 NaN 8992 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11757 54.737 NaN 242300 35 0 13162 0.261 + 6373 FPGEAERVAF 10 78 561.7829852016356 1121.551417470071 2 561.7835693359375 MULTI HCD FTMS 0 0 0 11751 95061.5078125 0.400538303027111 15 -0.4022216796875 6 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 34.221707139014875 0.19555013683537745 1 {M(Oxidation (M))|F}PGEAEA[RV]{M(Oxidation (M))|F} 10 2 + 36.468 0 0 3.2516 3.2516 79.476 0 0 0 18.72617620499149 2.49622901658924 2.49622901658924 0.657205584423366 0 1.1549471895720984 0 0.3807196863200844 0 {M(Oxidation (M))|F}PGEAEA[RV]{M(Oxidation (M))|F};{M(Oxidation (M))|F}DAPAEA[RV]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[W{I|L}][WR]A{M(Oxidation (M))|F} 3.2516;3.193;0.67162 -;-;- 294 + NaN NaN 126398.7 NaN 8993 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11758 54.74 NaN 218400 35 0 30186 0.261 -1 0 56 496.9445112243845 3471.5606433044914 7 497.2313232421875 MULTI HCD FTMS 0 0 0 11751 88439.8984375 0.6339798258753304 -4 0.09417343139648438 7 NaN NaN 1 {[TV]|[{I|L}S]}{[QG]|[NA]}EEVT 8 -1 44.5 0 0 1.2818 0 0 0 2625.139766905164 2625.139766905164 18.30198135264581 0 0 0 0 0 1.3010299956639813 0.7059771852360797 0.805462187404089 {[TV]|[{I|L}S]}{[QG]|[NA]}EEVT 1.2818 - 192 NaN NaN 123233.1 NaN 8994 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11759 54.744 NaN 265630 35 0 41027 0.261 -1 RYPTTFVMV 9 66 565.2894725371618 1128.5643921411236 2 565.2896728515625 MULTI HCD FTMS 0 0 0 11751 67044.1015625 0.5731061836988823 6 -0.16676712036132812 8 Oxidation (M) _RYPTTFVM(Oxidation (M))V_ ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF 32.78568957990786 0.09846250359632436 1 W{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 5 -1 47.875 0 0 4.2421 0 0 432.22383315254064 0 432.22383315254064 0 33.2711470149615 0 0 0 1.2302046884880937 0 0 0 W{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 4.2421 - 126 NaN NaN 120445.7 NaN 8995 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11760 54.747 NaN 92730 35 0 11677 0.261 + 13711 KYPLLLKEL 9 42 558.8548194137621 1115.6950858943242 2 558.8548583984375 MULTI HCD FTMS 0 0 0 11751 41908.51171875 0.4955780087209262 7 -0.1862945556640625 9 Unmodified _KYPLLLKEL_ ENSG00000124126|ENST00000371941|PREX1;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000124126|Q8TCU6-3|PREX1;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;TIAM2|p.L1253F|1|0.25|ENSG00000146426|chr6:155248104-155248104|C/T|missense_variant;TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant 11.494710602746466 0.2610445893512368 1 KY 2 7 25.969 0 0 2.3276 0 0 0 821.5162331837761 821.5162331837761 11.70432836127297 0 0 0 0 0.5 0 0 0 + KY 2.3276 + + 14 + NaN NaN 91203.8 NaN 8996 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11761 54.75 NaN 134090 35 0 9841.3 0.261 + 21503 PYGLYKAPI 9 61 511.2882345525381 NaN 0 511.2882080078125 PEAK HCD FTMS 0 0 0 11751 40806.671875 0.42461230099654257 5 -0.1406097412109375 10 Unmodified _PYGLYKAPI_ REV__ENSG00000128052|ENST00000263923|KDR;REV__KDR|p.T401Pfs*28|1|0.24|ENSG00000128052|chr4:55110460-55110460|G/-|frameshift_variant;REV__nc|ENSG00000128052|P35968-2|KDR;REV__nc|ENSG00000128052|P35968-3|KDR 13.50788311687929 0.22978952576613207 1 T 1 -1 13.979 0 0 1.3698 0 0 131.09590028737892 785.3972637476891 916.493164035068 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 T 1.3698 - 28 + NaN NaN 100562.9 NaN 8997 2762 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11763 54.755 NaN 1023400 35 0 126840 0.326 + 28154 TIVNILTNR 9 96 522.3139869197836 1042.613420906367 2 522.3143310546875 MULTI HCD FTMS 0 0 0 11762 414883.75 0.8097304665641005 1 -0.029449462890625 1 Unmodified _TIVNILTNR_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 179.28349886687624 1.1259799814826369E-12 1 [{I|L}T]VN{I|L}{I|L}TNR 9 0 + 108.81 0 0 10.436 10.436 92.533 0 0 0 6.718354963104531 6.718354963104531 6.718354963104531 7.474250108400469 0 2.7218487496163566 2 0.8703715150305281 0.9731975075880329 + + [{I|L}T]VN{I|L}{I|L}TNR;[{I|L}T]VQV{I|L}TNR;[{I|L}T]VN{I|L}{I|L}TGGR;[{I|L}T]VGG{I|L}{I|L}TNR;[{I|L}T]V[AG]V{I|L}TNR;[{I|L}T]VQV{I|L}TGGR;[{I|L}T]VGG{I|L}{I|L}TGGR;[{I|L}T]V[AG]V{I|L}TGGR;[{I|L}T]VN{I|L}{[QS]|[NT]}{I|L}R;[{I|L}T]P[KT]{I|L}TNR 10.436;9.7191;9.5528;9.5528;8.8359;8.8359;8.6738;7.9569;7.0722;7.0501 +;-;-;-;-;-;-;-;-;- + 1549 + NaN NaN 244826 NaN 8998 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11764 54.759 NaN 782360 35 0 53421 0.261 + 22702 QYAKDIGFI 9 99 527.7829521159886 NaN 0 527.7732543945312 PEAK HCD FTMS 0 0 0 11762 115218.4296875 1 0 0 2 Unmodified _QYAKDIGFI_ ENSG00000213741|ENST00000245458|RPS29;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF;nc|ENSG00000213741|P62273-2|RPS29 49.93300154707207 0.04641977017052576 1 SEPYVE 6 9 33.008 0 0 3.133 0 0 131.10983069499838 215.1037996881469 346.2136303831453 0 0 0 0 0 0 0 1.1861818737241734 0 SEPYVE 3.133 - 495 + NaN NaN 203843.7 NaN 8999 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11765 54.763 NaN 220220 35 0 35778 0.261 + 26011 SPEEIDAQL 9 57 501.2431019093356 1000.4716508854713 2 501.2433776855469 MULTI HCD FTMS 0 0 0 11762 127692.15625 0.05383298197812316 14 -0.3661346435546875 3 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 38.175570920033316 0.07371992880350783 1 Q{I|L}DAQ{I|L} 6 4 47.128 0 0 4.7106 0 0 314.12263686347814 0 314.12263686347814 0 25.9471653193118 0 0 0 1.1989700043360187 0 0.4247425010840047 0 Q{I|L}DAQ{I|L} 4.7106 - 92 NaN NaN 123090.6 NaN 9000 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11766 54.766 NaN 653670 35 0 96081 0.261 -1 0 95 514.2445773856272 1026.4746018380542 2 514.244873046875 MULTI HCD FTMS 0 0 0 11762 172433.828125 0.5403569977133735 -5 0.13026046752929688 4 NaN NaN 1 VS{I|L} 3 -1 38.698 0 0 3.77 0 0 709.2796812238997 0 709.2796812238997 0 13.036049848239344 0 0 0 0.9247425010840047 0 0.3252574989159953 0 VS{I|L} 3.77 - 490 NaN NaN 184118.9 NaN 9001 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11767 54.77 NaN 229830 35 0 46735 0.261 + 15389 LPDGKVIQL 9 58 491.80039106710717 NaN 0 491.8001708984375 PEAK HCD FTMS 0 0 0 11762 91082.0703125 0.618400539000405 -3 0.08487701416015625 5 Unmodified _LPDGKVIQL_ ENSG00000184378|ENST00000330368|ACTRT3 41.95555342248728 0.07200381670044957 1 PD 2 7 22.276 0 0 2.2694 0 0 113.08499441573697 653.4008883111936 766.4858827269306 0 0 0 0 0 0.805462187404089 0 0.3252574989159953 0 + PD 2.2694 + + 52 + NaN NaN 119917.4 NaN 9002 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11768 54.773 NaN 83804 35 0 9164.6 0.261 + 17715 MAVIDGNVM 9 42 483.22529176329743 NaN 0 483.2250671386719 PEAK HCD FTMS 0 0 0 11762 52938.94921875 0.4004079073433249 12 -0.31390380859375 6 Oxidation (M) _MAVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 62.57269311338072 0.020551833314469407 1 VNGD{I|L}V 6 7 40.068 0 0 4.1546 0 0 165.04668455665427 199.0551699274047 364.101854484059 0 0 0 0 0 2.492992819099939 0 0 0.4247425010840047 VNGD{I|L}V 4.1546 - 64 + NaN NaN 86216.4 NaN 9003 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11769 54.776 NaN 112400 35 0 25610 0.261 -1 AFYMRRSSQ 9 30 581.2771918679176 1160.5398308026352 2 581.2774047851562 MULTI HCD FTMS 0 0 0 11762 46663.4453125 0.8197796941603478 1 -0.029449462890625 7 Oxidation (M) _AFYM(Oxidation (M))RRSSQ_ ENST00000609104.5_1_10:11551634-11569506:-|nuORF 1.6526216038709556 0.33848895094777925 1 E 1 -1 3.9794 0 0 0.34289 0 0 166.1587405700164 862.3253878229124 1028.4841283929288 0 0 0 0 0 0 0 0 0 E 0.34289 - 1 + NaN NaN 98906.3 NaN 9004 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11770 54.78 NaN 118260 35 0 18435 0.261 -1 FPAGYMYPSM 10 47 598.2429929396999 1194.4714329461997 2 598.2437133789062 MULTI HCD FTMS 0 0 0 11762 39567.94140625 0.14256378486097496 -33 0.7520523071289062 8 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 25.399314129420986 0.2735354021946395 1 {M(Oxidation (M))|F}Y[PS]{M(Oxidation (M))|F} 5 -1 30.005 0 0 2.512 0 0 535.2424183576187 0 535.2424183576187 0 19.035984316004217 0 0 0 1.2302046884880937 0 0 0 {M(Oxidation (M))|F}Y[PS]{M(Oxidation (M))|F} 2.512 + + 75 NaN NaN 96299.4 NaN 9005 2763 11762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11772 54.784 NaN 1607200 35 0 193030 0.327 + 7358 FVDPNGKISL 10 111 545.3004968549961 1088.5864407767922 2 545.30078125 MULTI HCD FTMS 0 0 0 11771 880984.0625 1 0 0 1 Unmodified _FVDPNGKISL_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 102.5486954659897 6.036587169858109E-05 1 [{M(Oxidation (M))|F}V]DPNGK{I|L}S{I|L} 10 0 + 85.594 0 0 7.8629 7.8629 92.719 0 0 0 10.604468151047655 70.5326061301495 10.604468151047655 11.989700043360202 0 2.8193415193665468 1.5228787452803376 0.555462187404089 0.3252574989159953 + + [{M(Oxidation (M))|F}V]DPNGK{I|L}S{I|L};[YT]PPNGK{I|L}S{I|L};{M(Oxidation (M))|F}VDPNGK{I|L}S{I|L};{M(Oxidation (M))|F}VDPGGGK{I|L}S{I|L};[DV]{M(Oxidation (M))|F}PNGK{I|L}S{I|L};[DV]{M(Oxidation (M))|F}PGGGK{I|L}S{I|L};{M(Oxidation (M))|F}VDP[K{I|L}][NG]S{I|L};[{M(Oxidation (M))|F}V]D{[TV]|[{I|L}S]}GP{[QN]|[E{I|L}]|[KN]}{I|L};[YT]P{[TV]|[{I|L}S]}GP{[QN]|[E{I|L}]|[KN]}{I|L};[{M(Oxidation (M))|F}V]{[TV]|[{I|L}S]}DGP{[QN]|[E{I|L}]|[KN]}{I|L} 7.8629;6.7615;6.7597;5.9178;4.7541;3.9122;3.3773;2.8153;1.7139;1.4794 +;-;+;-;-;-;-;-;-;- + 2055 NaN NaN 323477.4 NaN 9006 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11773 54.789 NaN 675060 35 0 39118 0.261 + 6010 FPDRIMNTF 9 103 578.7764311978499 1155.5383094624997 2 578.7767333984375 MULTI HCD FTMS 0 0 0 11771 361751.28125 0.13557640991939837 -23 0.47682952880859375 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 132.13456570155267 0.00047552052208015726 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 2 + 83.896 0 0 7.2603 7.2603 86.334 0 0 0 4.209400425015133 6.366219245810058 4.209400425015133 1.9787880298540728 0 2.166386562212267 1.3979400086720375 0.5010912013506126 0.6109243748081782 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};M{I|L}DRYPNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};M{I|L}DRYPGGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 7.2603;7.0891;6.896;6.7094;6.4634;6.2922;5.8619;5.6752;5.5885;5.4173 -;+;+;-;-;-;-;-;-;- + 1464 NaN NaN 185695.8 NaN 9007 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11774 54.792 NaN 451070 35 0 62007 0.261 + 13366 KYMYFTVVM 9 69 607.2850141724352 1212.5554754116704 2 607.2854614257812 MULTI HCD FTMS 0 0 0 11771 195489.09375 0.9170251866897567 -5 0.13703155517578125 3 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 60.07390631473393 0.0174780869009295 1 Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 6 3 63.237 0 0 5.2152 0 0 438.19307143379064 0 438.19307143379064 0 27.491596866368013 0 0 0 1.9247425010840047 0 0.7614393726401688 0 + Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 5.2152 + + 875 NaN NaN 153763.6 NaN 9008 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11775 54.796 NaN 395550 35 0 77515 0.261 + 27309 SYQKVMALW 9 75 571.2893161582517 1140.5640793833034 2 571.289306640625 MULTI HCD FTMS 0 0 0 11771 179790.546875 0.9412202134461889 -3 0.08830642700195312 4 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 70.33199760932243 0.0089807860198535 1 {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W 9 0 + 82.643 0 0 7.2458 7.2458 90.258 0 0 0 5.6424927368725974 10.057809497117844 5.6424927368725974 9.208187539523749 0 3.055462187404089 0 0 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{[CA]|SS}KV{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}VK{[CA]|SS}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}V{[CA]|SS}KW;{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{M(Oxidation (M))|F}A{I|L}{[DA]|[EG]};{[{M(Oxidation (M))|F}C]|[YS]}Q[KS]{[ET]|[MV]}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}APE{[HG]|PP}KW;[HM][H{I|L}]HPA{I|L}W 7.2458;6.4385;5.6238;5.5566;5.1642;5.097;4.7531;3.294;2.9537;2.7275 +;-;-;-;-;-;-;-;-;- + 556 + NaN NaN 148031.5 NaN 9009 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11776 54.799 NaN 819230 35 0 183290 0.261 + 10703 IPYGERITL 9 98 531.3028991085027 1060.5912452838054 2 531.303466796875 MULTI HCD FTMS 0 0 0 11771 176303.234375 0.4058270314861215 -5 0.13703155517578125 5 Unmodified _IPYGERITL_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 37.07464296494664 0.07877380486334713 1 {I|L}PYGE 5 4 61.542 0 0 5.8026 0 0 0 498.3052662471112 498.3052662471112 38.40865672254594 0 0 0 0 1.1989700043360187 1.6989700043360187 0 0 + {I|L}PYGE 5.8026 + + 657 + NaN NaN 205541.5 NaN 9010 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11777 54.802 NaN 660420 35 0 44258 0.261 + 7994 GFGKFAEVSI 10 100 527.7829521159886 NaN 0 527.774658203125 PEAK HCD FTMS 0 0 0 11771 69456.0625 0.6028207699790866 1 -0.029449462890625 6 Unmodified _GFGKFAEVSI_ tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1 36.12702656103203 0.15814681568024677 1 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 6 8 25.718 0 0 2.4411 0 0 131.11112556607947 215.10360132388908 346.2147268899686 0 0 0 0 0 0 0 0.7302046884880937 0 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 2.4411 - 485 + NaN NaN 185067.7 NaN 9011 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11778 54.806 NaN 285720 35 0 42824 0.261 + 23555 RPDDVPLSL 9 66 506.276965040406 1010.5393771476121 2 506.2774353027344 MULTI HCD FTMS 0 0 0 11771 48752.0078125 0.6604038478369437 -6 0.15970993041992188 7 Unmodified _RPDDVPLSL_ ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102108514-102108640:+|nuORF 12.240655878213236 0.2545997876781172 1 S{I|L} 2 7 25.969 0 0 2.5698 0 0 792.4121392505735 0 792.4121392505735 0 10.484550065040281 0 0 0 0.5 0 0 0 + S{I|L} 2.5698 + + 63 NaN NaN 124119.8 NaN 9012 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11779 54.809 NaN 168490 35 0 13428 0.261 -1 YPESESIMM 9 60 551.7255586323867 1101.4365643315732 2 551.7257080078125 MULTI HCD FTMS 0 0 0 11771 50392.86328125 0.5141130517064767 6 -0.15027618408203125 8 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}M 2 -1 25.969 0 0 2.3577 0 0 805.3492210054169 0 805.3492210054169 0 12.781512503836437 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}M 2.3577 + + 17 NaN NaN 109520.6 NaN 9013 2764 11771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11781 54.814 NaN 1133600 35 0 267220 0.327 + 16116 LPTENGGVIS 10 68 493.76105763622076 985.5075623392415 2 493.7615051269531 MULTI HCD FTMS 0 0 0 11780 723961.125 0.3174549989404809 -5 0.14377593994140625 1 Unmodified _LPTENGGVIS_ REV__ENSG00000139517|ENST00000316334|LNX2 53.832793166522166 0.06385051108671999 1 [{I|L}P]TNQDVS{I|L} 9 -1 + 83.465 0 0 8.4692 8.4692 88.254 0 0 0 12.328569748450917 10.268024924119672 10.268024924119672 1.9629464514396915 0 1.774227503252014 1.154901959985743 0.7742275032520141 0.4247425010840047 [{I|L}P]TNQDVS{I|L};[{I|L}P]TQNDVS{I|L};[{I|L}P]TN[AG]DVS{I|L};[{I|L}P]TGGQDVS{I|L};[{I|L}P]TNQDVVT;[{I|L}P]TQGGDVS{I|L};[{I|L}P]T[AG]NDVS{I|L};[{I|L}P]TQNDVVT;{[TV]|[{I|L}S]}[QP]QDVS{I|L};[{I|L}P]TN[AG]DVVT 8.4692;8.27;7.5349;7.5349;7.4273;7.3357;7.3357;7.2281;7.2182;6.493 -;-;-;-;-;-;-;-;-;- 955 NaN NaN 254026.2 NaN 9014 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11782 54.818 NaN 479830 35 0 47455 0.261 + 18240 MPDVDLHL 8 70 478.23169742748837 954.4488419217768 2 478.23138427734375 MULTI HCD FTMS 0 0 0 11780 219990.28125 0.2980002705826535 16 -0.4120826721191406 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 69.167 0 0 7.2468 7.2468 88.407 0 0 0 4.6040937697618745 38.44425483020814 4.6040937697618745 6.7216751192405155 0 2.305462187404089 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{M(Oxidation (M))|F}P{[CP]|[EA]}E{I|L}H{I|L};[H{I|L}]{I|L}{M(Oxidation (M))|F}{[CP]|[EA]}PE;[{I|L}P][DV]{[{M(Oxidation (M))|F}D]|MM}H{I|L};[H{I|L}]WW[WQ] 7.2468;6.5425;4.9367;3.7148;3.1273;1.1341;0.93691 +;+;-;-;-;-;- + 222 NaN NaN 158739.7 NaN 9015 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11783 54.822 NaN 446940 35 0 42233 0.261 + -1 NADLAELREM 10 69 589.2813168195801 NaN 0 589.2933349609375 PEAK HCD FTMS 0 0 0 11780 15279.8740234375 1 0 0 3 Oxidation (M) _NADLAELREM(Oxidation (M))_ REV__ENSG00000122705|ENST00000345519|CLTA;REV__nc|ENSG00000122705|P09496-3|CLTA;REV__nc|ENSG00000122705|P09496-4|CLTA;REV__nc|ENSG00000122705|P09496|CLTA 12.240655878213236 0.32970798410958835 1 {M(Oxidation (M))|F}SNH{I|L}{I|L} 6 -1 45.706 0 0 3.8848 0 0 165.05562383774355 297.09894739322505 462.1545712309686 0 0 0 0 0 0.3807196863200844 0 0.9247425010840047 0 {M(Oxidation (M))|F}SNH{I|L}{I|L} 3.8848 - 133 + NaN NaN 152151.2 NaN 9016 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11784 54.825 NaN 354740 35 0 70970 0.261 + 27310 SYQKVMALW 9 70 571.2893161582517 1140.5640793833034 2 571.2896118164062 MULTI HCD FTMS 0 0 0 11780 184137.4375 0.9639765896461805 -2 0.05889892578125 4 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 61.60191391372663 0.015340508911304802 1 {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W 9 0 + 79.703 0 0 6.988 6.988 89.747 0 0 0 4.89909385331508 4.89909385331508 4.89909385331508 9.208187539523749 0 3.110924374808178 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{[CA]|SS}KV{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}K{[CA]|SS}V{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{M(Oxidation (M))|F}A{I|L}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}V{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[{M(Oxidation (M))|F}C]|[YS]}Q[{I|L}T][KC]{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}VK{[CA]|SS}[VS];{[{M(Oxidation (M))|F}C]|[YS]}Q{[VA]|[{I|L}G]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}W 6.988;6.1807;5.7512;5.6724;5.1457;4.9476;4.0944;2.4705;2.428;2.3547 +;-;-;-;-;-;-;-;-;- + 489 + NaN NaN 135396.5 NaN 9017 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11785 54.829 NaN 1092800 35 0 161040 0.261 + 13915 KYQIINEEF 9 85 592.3032305433263 1182.5919081534526 2 592.3033447265625 MULTI HCD FTMS 0 0 0 11780 453235 0.196982279374447 -5 0.14377593994140625 5 Unmodified _KYQIINEEF_ ENSG00000163755|ENST00000296051|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3 165.7202790778711 6.154960448002056E-09 1 [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F} 9 0 + 96.155 0 0 8.1309 8.1309 91.633 0 0 0 3.65279269351241 55.09704696843414 3.65279269351241 9.208187539523749 0 3.1237125054200234 0 0 2.030369551124698 + + [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F};[YK]Q{I|L}{I|L}GGEE{M(Oxidation (M))|F};[YK][AG]{I|L}{I|L}NEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}NEE{M(Oxidation (M))|F};[YK][AG]{I|L}{I|L}GGEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}GGEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]K{I|L}KNEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[SA]|[TG]}K{I|L}NEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]K{I|L}KGGEE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}{M(Oxidation (M))|F}KKE{M(Oxidation (M))|F} 8.1309;7.3522;7.3522;7.1375;6.5773;6.3589;6.0972;5.552;5.3186;4.8106 +;-;-;-;-;-;-;-;-;- + 1946 NaN NaN 255293.7 NaN 9018 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11786 54.832 NaN 328420 35 0 57456 0.261 + 7822 FYQPKIQQF 9 57 599.8163570958842 1197.6181612585683 2 599.8161010742188 MULTI HCD FTMS 0 0 0 11780 147864.421875 0.7623300031102775 -5 0.14377593994140625 6 Unmodified _FYQPKIQQF_ chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI 64.23631603340823 0.01165516075559909 1 QQ{M(Oxidation (M))|F} 3 6 29.182 0 0 2.4367 0 0 776.4216175763687 0 776.4216175763687 0 5.670240868276579 0 0 0 0.3252574989159953 0 0 0.4247425010840047 + QQ{M(Oxidation (M))|F} 2.4367 + + 83 NaN NaN 135531.5 NaN 9019 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11787 54.835 NaN 209080 35 0 32746 0.261 + -1 FTFSSMLFTLA 11 49 640.8172817606622 NaN 0 640.7978515625 PEAK HCD FTMS 0 0 0 11780 7762.908203125 0.2370708520896198 -3 0.0949859619140625 7 Oxidation (M) _FTFSSM(Oxidation (M))LFTLA_ REV__ENSG00000013588|ENST00000014914|GPRC5A;REV__ENST00000537783.1_1_12:13044524-13062212:+|nuORF 5.296884461304476 0.3270944076746277 1 S 1 -1 11.237 0 0 0.87816 0 0 165.1130715397881 1024.4444756867297 1189.5575472265177 0 0 0 0 0 0 0 0.4247425010840047 0 S 0.87816 + + 34 + NaN NaN 114635.6 NaN 9020 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11788 54.838 NaN 236150 35 0 12472 0.261 + 33330 YFVYSQVVFSG 11 54 648.3182364443845 NaN 0 648.3194580078125 PEAK HCD FTMS 0 0 0 11780 24148.60546875 0.4626030466935486 5 -0.12082672119140625 8 Unmodified _YFVYSQVVFSG_ ENSG00000226979|ENST00000418386|LTA 8.155526934196011 0.3189852622248163 1 YN{M(Oxidation (M))|F}YKH 6 9 18.281 0 0 1.4121 0 0 132.10075578285029 307.1085299127563 439.2092856956066 0 0 0 0 0 0.3494850021680094 0 0 0.3807196863200844 YN{M(Oxidation (M))|F}YKH 1.4121 - 70 + NaN NaN 113234.5 NaN 9021 2765 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11790 54.843 NaN 494830 35 0 65686 0.327 + 18212 MPDLPEKL 8 75 471.7521049018219 941.4896568704438 2 471.7519226074219 MULTI HCD FTMS 0 0 0 11789 311599.75 0.4377285508360274 4 -0.0913848876953125 1 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 53.832793166522166 0.10403901041949734 1 MPD{I|L}PE[K{I|L}] 8 0 + 71.819 0 0 7.6282 7.6282 96.222 0 0 0 43.72338927784168 12.037632942370266 12.037632942370266 71.81901438173645 0 1.829689690656103 1.5228787452803376 0 0.28872548999643577 + + MPD{I|L}PE[K{I|L}] 7.6282 + + 211 + NaN NaN 157898.6 NaN 9022 2766 11789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11791 54.848 NaN 311510 35 0 39597 0.261 + 27385 SYSQSSNLF 9 72 516.7358005723795 1031.457048211559 2 516.736328125 MULTI HCD FTMS 0 0 0 11789 60140.67578125 0.31145678955402806 5 -0.12755203247070312 2 Unmodified _SYSQSSNLF_ ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF 51.41523569358685 0.02959097413485123 1 SSN{I|L}{M(Oxidation (M))|F} 5 4 43.421 0 0 4.2097 0 0 465.18831156539034 0 465.18831156539034 0 24.83771747200825 0 0 0 1.6861818737241734 0 0.28872548999643577 0.3494850021680094 + SSN{I|L}{M(Oxidation (M))|F} 4.2097 + + 173 NaN NaN 131490.2 NaN 9023 2766 11789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11792 54.851 NaN 85165 35 0 6568.8 0.261 + 7056 FQIINKDEME 10 49 633.8053974265821 1265.596241919964 2 634.3079223632812 MULTI HCD FTMS 0 0 0 11789 21328.208984375 0.0775594239215504 -19 0.3823738098144531 3 Unmodified _FQIINKDEME_ REV__ENSG00000120217|ENST00000381577|CD274;REV__nc|ENSG00000120217|Q9NZQ7-3|CD274;REV__nc|ENSG00000120217|Q9NZQ7-4|CD274 1.4819007175156935 0.4674597685733628 1 K 1 -1 6.9897 0 0 0.55229 0 0 390.2060574490641 744.2695406549436 1134.4755981040078 0 0 0 0 0 0 0 0 0 K 0.55229 + + 4 + NaN NaN 90182.6 NaN 9024 2766 11789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11793 54.855 NaN 42547 35 0 4804.9 0.261 + 12816 KYEFTVYQQ 9 33 603.2954591117173 NaN 0 602.8422241210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _KYEFTVYQQ_ ENST00000381103.6_1_5:61602143-61604167:+|nuORF 3.2813086475875832 0.27934607848455584 1 Y 1 8 6.9897 0 0 0.58026 0 0 128.09633706933442 910.3900850885374 1038.4864221578719 0 0 0 0 0 0 0 0 0 + Y 0.58026 + + 1 + NaN NaN 91452.6 NaN 9025 2766 11789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11795 54.86 NaN 1813600 35 0 361640 0.327 + 24643 RYLQTLTTI 9 89 554.821573921432 1107.628594909664 2 554.8218383789062 MULTI HCD FTMS 0 0 0 11794 999992.75 0.4580562836158492 5 -0.14419174194335938 1 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 90.13494162714682 0.004522430935000059 1 [YR]{I|L}QT{I|L}TT{I|L} 9 0 + 80.116 0 0 7.2331 7.2331 90.231 0 0 0 3.2568864632742844 23.429862658764264 3.2568864632742844 9.208187539523749 0 2.1549471895720984 0 1.3494850021680094 0 + + [YR]{I|L}QT{I|L}TT{I|L};[YR]{I|L}[AG]T{I|L}TT{I|L};[YR]{I|L}QTT{I|L}T{I|L};[{I|L}T][VP]HQVTT{I|L};[{I|L}T][VP]HN{I|L}TT{I|L};[YR]{I|L}[AG]TT{I|L}T{I|L};[{I|L}T]G[HV][PG]{I|L}TT{I|L};[{I|L}T][VP]HQ{I|L}ST{I|L};[{I|L}T][VP]HNT{I|L}T{I|L};[{I|L}T]G[HV][PG]T{I|L}T{I|L} 7.2331;6.4018;5.9675;5.2327;5.1758;5.1361;4.8063;3.971;3.9102;3.5406 +;-;-;-;-;-;-;-;-;- + 2639 NaN NaN 345936 NaN 9026 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11796 54.864 NaN 504260 35 0 32588 0.261 -1 LCVNMRSL 8 88 504.7524422807752 1007.4903316283504 2 504.7528076171875 MULTI HCD FTMS 0 0 0 11794 237147.109375 0.7584279039468854 -2 0.045623779296875 2 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))VNM(Oxidation (M))RSL_ ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8 26.88365393820708 0.39599352634412927 1 TP{I|L}NQDV 7 -1 64.136 0 0 6.3659 0 0 0 237.08506189517814 237.08506189517814 28.690257421222398 0 0 0 0 1.7416440611282624 1.0969100130080565 0.3054621874040891 0 TP{I|L}NQDV 6.3659 - 447 + NaN NaN 163447.4 NaN 9027 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11797 54.868 NaN 419680 35 0 42599 0.261 + 18595 MVSDEYEQL 9 87 557.2419426851561 1112.4693324371121 2 557.241943359375 MULTI HCD FTMS 0 0 0 11794 158586.6875 0.31782618999424816 -3 0.0750732421875 3 Unmodified _MVSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 103.74828524460852 0.00396301343438984 1 {[QN]|[E{I|L}]|[KN]}E[CS]YEQ{I|L} 9 5 + 54.613 0 0 4.9092 4.9092 82.58 0 0 0 2.432562101416167 45.66061246681059 2.432562101416167 3.0102999566398125 0 1 0 1.0994850021680094 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}E[CS]YEQ{I|L};{[QN]|[E{I|L}]|[KN]}EY[CS]EQ{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}EY[CS]E[AG]{I|L} 4.9092;4.6386;4.0814;3.8109 -;-;-;- 278 NaN NaN 147739.3 NaN 9028 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11798 54.871 NaN 314720 35 0 35581 0.262 + 33919 YLQDNHLFFSL 11 58 466.2346415801483 1395.682095340645 3 466.23486328125 MULTI HCD FTMS 0 0 0 11794 134121.609375 0.5772429657158504 6 -0.1704254150390625 4 Unmodified _YLQDNHLFFSL_ REV__ENSG00000136011|ENST00000388887|STAB2;REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant 15.538449434065043 0.3216953923945805 1 YS{I|L} 3 -1 40.445 0 0 2.8979 0 0 1014.4911501110347 0 1014.4911501110347 0 26.95046257204389 0 0 0 1 0 0.4247425010840047 0 YS{I|L} 2.8979 - 127 NaN NaN 148344.8 NaN 9029 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11799 54.874 NaN 410350 35 0 12964 0.261 + 22790 QYLEKYYNL 9 85 617.311434846243 1232.6083167592858 2 617.310546875 MULTI HCD FTMS 0 0 0 11794 73493.78125 0.33148312418553716 -3 0.0750732421875 5 Unmodified _QYLEKYYNL_ chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10;ENSG00000166670|ENST00000279441|MMP10 69.10491478415734 0.009377850133389008 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 10 7 + 50.992 0 0 4.1369 4.1369 80.943 0 0 0 5.071297076834611 1.8752072083646354 1.8752072083646354 1.8752072083646354 0 1.0356668758921828 2 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}MAA;[Y{I|L}]Q{[HG]|PP}TE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]Q{[HG]|PP}TE{I|L}MAA;[YQ]{I|L}EKYY{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]Q[TP]PE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]Q[TP]PE{I|L}MAA;[Y{I|L}]T[QP]PE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]T[QP]PE{I|L}MAA;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E[NG][KS] 4.1369;3.9847;3.7255;3.5733;3.4567;3.2677;3.1155;2.9909;2.8388;2.8227 -;-;-;-;+;-;-;-;-;- + 1393 NaN NaN 150606.3 NaN 9030 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11800 54.878 NaN 225600 35 0 14733 0.261 + -1 KNWSGAGCPF 10 73 562.255488604503 1122.4964242758058 2 563.7576293945312 MULTI HCD FTMS 0 0 0 11794 39477.92578125 0.5531998875465464 -11 0.2613983154296875 6 Carbamidomethyl (C) _KNWSGAGC(Carbamidomethyl (C))PF_ REV__ENSG00000158113|ENST00000339777|LRRC43 10.073929032068715 0.4168838835836452 1 KQTASA 6 -1 38.665 0 0 3.4446 0 0 0 533.1824948091438 533.1824948091438 20.90533803499873 0 0 0 0 0 0 0.805462187404089 0 KQTASA 3.4446 - 277 + NaN NaN 120318.2 NaN 9031 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11801 54.881 NaN 78466 35 0 7484.3 0.261 -1 0 45 626.1588132942336 NaN 0 626.3110961914062 PEAK HCD FTMS 0 0 0 11794 9452.9599609375 0.5331806654739663 -1 0.01618194580078125 7 NaN NaN 1 {M(Oxidation (M))|F}KM 3 -1 12.703 0 0 1.016 0 0 243.87266755105082 597.2344454400999 841.1071129911506 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}KM 1.016 - 11 + NaN NaN 93447 NaN 9032 2767 11794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11803 54.886 NaN 198150 35 0 19173 0.327 -1 0 53 496.9445112243845 3471.5606433044914 7 497.2313232421875 MULTI HCD FTMS 0 0 0 11802 68369.171875 0.490103182458814 2 -0.049045562744140625 1 NaN NaN 1 TV{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VTM 7 -1 34.781 0 0 1.0019 0 0 2628.1642834986387 0 2628.1642834986387 0 17.791229100142445 0 0 0 0 0 0.3054621874040891 0 TV{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VTM 1.0019 - 118 + NaN NaN 113496.8 NaN 9033 2768 11802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11804 54.89 NaN 450050 35 0 72998 0.261 + 21053 PLTTNPNEPLA 11 87 583.8065425397962 NaN 0 583.8244018554688 PEAK HCD FTMS 0 0 0 11802 19574.134765625 0.7195242618993397 3 -0.08521270751953125 2 Unmodified _PLTTNPNEPLA_ REV__ENSG00000204406|ENST00000642680|MBD5;REV__nc|ENSG00000204406|Q9P267|MBD5 13.042465956692817 0.3051224235824938 1 PEE 3 -1 24.693 0 0 2.1185 0 0 113.04838991536151 694.3882643842483 807.4366542996098 0 0 0 0 0 0 0 0.8494850021680094 0 PEE 2.1185 - 1422 + NaN NaN 151811.8 NaN 9034 2768 11802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11805 54.894 NaN 132870 35 0 5518.9 0.261 + 22003 QFIRFPADE 9 59 561.7829852016356 1121.551417470071 2 561.7837524414062 MULTI HCD FTMS 0 0 0 11802 52151.15625 0.21973705347149985 21 -0.5667343139648438 3 Unmodified _QFIRFPADE_ ENSG00000180423|ENST00000326737|HARBI1 10.073929032068715 0.27331982688540024 1 PADE 4 5 27.652 0 0 2.4655 0 0 691.36723525215 0 691.36723525215 0 12.95880017344075 0 0 0 0 0 0.3494850021680094 0 + PADE 2.4655 + + 21 NaN NaN 107075.9 NaN 9035 2768 11802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11806 54.897 NaN 190760 35 0 18010 0.261 -1 RYPTTFVMV 9 58 565.2894725371618 1128.5643921411236 2 565.2894287109375 MULTI HCD FTMS 0 0 0 11802 51418.36328125 0.4395342955664643 12 -0.32070159912109375 4 Oxidation (M) _RYPTTFVM(Oxidation (M))V_ ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF 26.268140514670165 0.13340543277302316 1 W{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 5 -1 42.691 0 0 3.7828 0 0 432.22615248847814 0 432.22615248847814 0 31.721675119240516 0 0 0 0.9247425010840047 0 0 0 W{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 3.7828 - 106 NaN NaN 110996.7 NaN 9036 2768 11802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11807 54.9 NaN 143020 35 0 15744 0.261 + 25456 SFAHDLAPL 9 55 485.7514575086576 969.4883620841152 2 485.75042724609375 MULTI HCD FTMS 0 0 0 11802 29180.0703125 0.8897354697503438 1 -0.019527435302734375 5 Unmodified _SFAHDLAPL_ ENSG00000110324|ENST00000227752|IL10RA;ENST00000530761.5_1_11:117857521-117870353:+|nuORF 12.531546534597751 0.2520865569484384 1 G{M(Oxidation (M))|F} 2 8 19.38 0 0 1.999 0 0 747.3888422860668 0 747.3888422860668 0 13.895840698003 0 0 0 0.3807196863200844 0 0 0 G{M(Oxidation (M))|F} 1.999 - 48 + NaN NaN 112321.1 NaN 9037 2768 11802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11809 54.905 NaN 755890 35 0 118510 0.327 -1 0 85 514.2445773856272 1026.4746018380542 2 514.244873046875 MULTI HCD FTMS 0 0 0 11808 264688.25 0.8294552736851898 1 -0.02951812744140625 1 NaN NaN 1 VS{I|L} 3 -1 39.253 0 0 3.824 0 0 709.2804147460137 0 709.2804147460137 0 17.085521743960328 0 0 0 0.9247425010840047 0 0.3807196863200844 0 VS{I|L} 3.824 - 592 NaN NaN 196230.8 NaN 9038 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11810 54.91 NaN 810320 35 0 70957 0.261 + 28155 TIVNILTNR 9 107 522.3139869197836 1042.613420906367 2 522.314208984375 MULTI HCD FTMS 0 0 0 11808 146348.015625 0.28562807526870243 7 -0.19974899291992188 2 Unmodified _TIVNILTNR_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 57.107585691075435 0.021627766313179933 1 [{I|L}T]VN{I|L}{I|L}T[RN] 9 0 + 71.683 0 0 6.8753 6.8753 89.555 0 0 0 58.49514231574189 4.762036441594191 4.762036441594191 9.208187539523749 0 2.0858317385287872 1.6989700043360187 0 0.2742275032520141 + + [{I|L}T]VN{I|L}{I|L}T[RN];[{I|L}T]VGG{I|L}{I|L}T[RN];[{I|L}T]VQV{I|L}T[RN];[{I|L}T]V[AG]V{I|L}T[RN];{[NV]|[RG]}{I|L}T{I|L}{I|L}T[RN];[{I|L}A]AAT{I|L}{I|L}T[RN] 6.8753;5.9921;5.2088;3.7606;2.2221;1.6198 +;-;-;-;-;- + 635 + NaN NaN 210631.5 NaN 9039 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11811 54.913 NaN 607320 35 0 87089 0.261 -1 0 74 570.306936850039 569.299660383439 1 570.3088989257812 MULTI HCD FTMS 0 0 0 11808 190602.421875 0.47566546462423437 -2 0.045684814453125 3 NaN NaN 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}DT 4 -1 23.416 0 0 4.1132 0 0 0 77.09218669804207 77.09218669804207 16.84955642535897 0 0 0 0 0 1.5228787452803376 0.3494850021680094 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}DT 4.1132 - 89 NaN NaN 172357.5 NaN 9040 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11812 54.917 NaN 528700 35 0 18439 0.261 + 22791 QYLEKYYNL 9 94 617.311434846243 1232.6083167592858 2 617.3121948242188 MULTI HCD FTMS 0 0 0 11808 210270.8125 0.9483962407027642 -1 0.019527435302734375 4 Unmodified _QYLEKYYNL_ chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10;ENSG00000166670|ENST00000279441|MMP10 114.6490535036381 0.0021834323520089267 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L} 10 7 + 70.027 0 0 5.6812 5.6812 84.497 0 0 0 4.238178178688855 4.238178178688855 4.238178178688855 4.238178178688855 0 0.6505149978319906 1.5228787452803376 0.28872548999643577 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L};[YQ]{I|L}EKYYN{I|L};[Y{I|L}]Q[TP]PE{I|L}C(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}[CG]{I|L};[YQ]{I|L}[TP]PE{I|L}C(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}RR{I|L}C(Carbamidomethyl (C)){I|L};[Y{I|L}]Q[TP]PE{I|L}[CG]{I|L};[YQ]{I|L}[TP]PE{I|L}[CG]{I|L};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L};{NN|[MP]|[D{I|L}]|[EV]}{[WT]|[RM]}[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L} 5.6812;5.3374;4.9707;4.9377;4.516;4.4056;4.2272;3.7725;3.6576;3.5562 -;+;-;-;-;-;-;-;-;- + 3271 NaN NaN 164503.5 NaN 9041 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11813 54.92 NaN 312070 35 0 20152 0.261 + 19388 NPESKVFYL 9 94 548.7872251384427 NaN 0 548.7871704101562 PEAK HCD FTMS 0 0 0 11808 41456.26953125 0.5413536385060345 -1 0.019527435302734375 5 Unmodified _NPESKVFYL_ ENSG00000134308|ENST00000238081|YWHAQ 34.93206674587334 0.09452846457412575 1 PE 2 7 12.747 0 0 1.1635 0 0 114.0412506308597 752.3984469049436 866.4396975358034 0 0 0 0 0 0 0 0.566901560044258 0 + PE 1.1635 + + 200 + NaN NaN 127281.5 NaN 9042 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11814 54.923 NaN 105740 35 0 7316 0.261 + 28486 TPPYADPSL 9 49 480.737254123963 959.459955314726 2 480.7370910644531 MULTI HCD FTMS 0 0 0 11808 51690.875 0.7997606193291914 4 -0.1247406005859375 6 Unmodified _TPPYADPSL_ ENSG00000173039|ENST00000406246|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA 20.453626601364224 0.18364154288633264 1 D[PS]{I|L} 4 5 27.747 0 0 2.892 0 0 529.2540150373062 0 529.2540150373062 0 27.74735947860492 0 0 0 0.805462187404089 0 0.3494850021680094 0 + D[PS]{I|L} 2.892 + + 20 NaN NaN 99996.5 NaN 9043 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11815 54.927 NaN 353790 35 0 24076 0.261 + 9677 HVLEEVESL 9 78 527.7743823830499 1053.5342118328997 2 527.7733154296875 MULTI HCD FTMS 0 0 0 11808 109837.421875 0.505678128621283 7 -0.19974899291992188 7 Unmodified _HVLEEVESL_ ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7 46.020951573049366 0.037705236580089195 1 VES{I|L} 4 5 47.805 0 0 4.5376 0 0 607.29496962715 0 607.29496962715 0 30.638181262758263 0 0 0 1.2614393726401687 0 0.3252574989159953 0 + VES{I|L} 4.5376 + + 380 NaN NaN 133558.9 NaN 9044 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11816 54.93 NaN 136180 35 0 17813 0.263 -1 FYFFYKCF 8 52 407.85325088726296 1220.537923261989 3 407.8536682128906 MULTI HCD FTMS 0 0 0 11808 48458.83984375 0.6656491905889893 -2 0.045684814453125 8 Carbamidomethyl (C) _FYFFYKC(Carbamidomethyl (C))F_ ENST00000370272.8_1_1:93826206-93826275:+|nuORF 7.289230182591677 0.5311777711368266 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.392 0 0 1055.4590028291748 0 1055.4590028291748 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.392 + + 2 + NaN NaN 100463.1 NaN 9045 2769 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11818 54.935 NaN 1364400 35 0 83277 0.327 + 6011 FPDRIMNTF 9 110 578.7764311978499 1155.5383094624997 2 578.7767333984375 MULTI HCD FTMS 0 0 0 11817 654554.25 0.2453125114190162 -17 0.37714385986328125 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 154.7525637096362 3.8021791163654463E-06 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 91.831 0 0 7.947 7.947 86.588 0 0 0 2.1008119179173264 3.5114904940137137 2.1008119179173264 0.39333066402750205 0 2.4135291967670716 1.2218487496163564 0.5451140161145328 0.6203715150305281 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};M{I|L}DYRPNT{M(Oxidation (M))|F};M{I|L}DRYPNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};M{I|L}DYRPGGT{M(Oxidation (M))|F};M{I|L}DRYPGGT{M(Oxidation (M))|F} 7.947;7.913;7.7652;7.6432;7.5582;7.1502;7.1161;6.704;6.5819;6.497 +;-;+;-;-;-;-;-;-;- + 4693 NaN NaN 291391.2 NaN 9046 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11819 54.939 NaN 1098000 35 0 90969 0.261 -1 CLILEASRQ 9 119 545.28887552621 NaN 0 545.3007202148438 PEAK HCD FTMS 0 0 0 11817 12562.703125 0.5358034985770033 1 -0.036167144775390625 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LILEASRQ_ ENSG00000184507|ENST00000537011|NUTM1 13.90604991867851 0.22786006501039813 1 S{I|L}[VS]{M(Oxidation (M))|F}ATS 8 -1 18.979 0 0 1.7435 0 0 131.0683197922562 162.05584131412346 293.1241611063797 0 0 0 0 0 0.19238776965543153 0 0.4225924581435253 0 S{I|L}[VS]{M(Oxidation (M))|F}ATS 1.7435 - 611 + NaN NaN 273358.5 NaN 9047 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11820 54.943 NaN 1580300 35 0 199410 0.261 + 22302 QPFREAIAL 9 95 522.7953228393754 1043.5760927455508 2 522.7955932617188 MULTI HCD FTMS 0 0 0 11817 634113.125 0.21657172282808604 -4 0.0913848876953125 3 Unmodified _QPFREAIAL_ ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 49.93300154707207 0.03166451819912738 1 [{I|L}T]VN{I|L}{M(Oxidation (M))|F}HA 8 8 23.119 0 0 2.2154 0 0 0 145.09617340466846 145.09617340466846 1.6656313806602512 0 0 0 0 0 1.5228787452803376 0.6109243748081782 0 [{I|L}T]VN{I|L}{M(Oxidation (M))|F}HA 2.2154 - 1227 NaN NaN 335944.7 NaN 9048 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11821 54.946 NaN 237460 35 0 43245 0.261 + 13367 KYMYFTVVM 9 52 607.2850141724352 1212.5554754116704 2 607.2855834960938 MULTI HCD FTMS 0 0 0 11817 141289.125 0.6627770569955767 1 -0.036167144775390625 4 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 45.69961567697781 0.039180348357221985 1 Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 6 3 62.868 0 0 5.1848 0 0 438.19395644355626 0 438.19395644355626 0 42.69077524932108 0 0 0 1.9247425010840047 0 0.8494850021680094 0 + Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 5.1848 + + 126 NaN NaN 126025 NaN 9049 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11822 54.949 NaN 140740 35 0 20819 0.261 + 18473 MPYLEHESF 9 65 576.7551828070302 1151.4958126808604 2 576.7556762695312 MULTI HCD FTMS 0 0 0 11817 60423.63671875 0.24987890886418776 8 -0.22254180908203125 5 Unmodified _MPYLEHESF_ ENSG00000097046|ENST00000234626|CDC7 25.399314129420986 0.14091189997036632 1 MPYEE[H{I|L}]S{M(Oxidation (M))|F} 9 2 + 34.601 0 0 3.0049 3.0049 88.108 0 0 0 11.641974908773925 7.165762445130504 7.165762445130504 34.600775082214675 0 1.1747425010840047 0 0 0 MPYEE[H{I|L}]S{M(Oxidation (M))|F} 3.0049 - 52 + NaN NaN 106311.7 NaN 9050 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11823 54.953 NaN 366920 35 0 18851 0.261 + 14058 KYVKILYDF 9 82 594.8366832006712 1187.6588134681424 2 594.83740234375 MULTI HCD FTMS 0 0 0 11817 62311.94140625 0.5861115952960154 -4 0.0913848876953125 6 Unmodified _KYVKILYDF_ ENSG00000177106|ENST00000318562|EPS8L2;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENST00000527832.5_1_11:724661-726978:+|nuORF;ENST00000531393.5_1_11:721935-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2 59.368380827593164 0.01846506874148156 1 KYVK{I|L}{I|L}YD{M(Oxidation (M))|F} 9 0 + 52.725 0 0 4.4394 4.4394 90.251 0 0 0 33.595756168365014 3.655907281837841 3.655907281837841 52.72546876525617 0 2.084121882396211 0 0 0 + + KYVK{I|L}{I|L}YD{M(Oxidation (M))|F} 4.4394 + + 225 + NaN NaN 140523.8 NaN 9051 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11824 54.956 NaN 198430 35 0 9720.1 0.261 -1 FASCNGNDQI 10 72 563.2331111088852 1124.4516692845702 2 563.2728881835938 MULTI HCD FTMS 0 0 0 11817 8475.8759765625 0.18354161919151574 4 -0.11803817749023438 7 Carbamidomethyl (C) _FASC(Carbamidomethyl (C))NGNDQI_ ENSG00000100124|ENST00000215941|ANKRD54 6.2057823575117 0.44245551207394906 1 QTA[C(Carbamidomethyl (C))C]ATQ{I|L} 9 -1 28.368 0 0 2.5228 0 0 130.04494428632648 0 130.04494428632648 0 6.685071558341008 0 0 0 0.4247425010840047 0 0.3807196863200844 0.4247425010840047 QTA[C(Carbamidomethyl (C))C]ATQ{I|L} 2.5228 - 99 + NaN NaN 113465.3 NaN 9052 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11825 54.959 NaN 330690 35 0 120120 0.263 + 28820 TVAPPALSL 9 49 434.7601193225069 867.5056857118138 2 434.7600402832031 MULTI HCD FTMS 0 0 0 11817 58615.9609375 0.7580632417616615 -1 0.02951812744140625 8 Unmodified _TVAPPALSL_ REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF 26.88365393820708 0.12808753336095696 1 S{I|L} 2 -1 33.711 0 0 3.886 0 0 649.3800383304846 0 649.3800383304846 0 19.10728139283883 0 0 0 0.8494850021680094 0 0.4247425010840047 0 S{I|L} 3.886 + + 20 NaN NaN 130074.7 NaN 9053 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11826 54.963 NaN 195330 35 0 14375 0.261 + 7595 FYHKYFNYL 9 46 647.8164508336723 1293.6183487341445 2 647.815673828125 MULTI HCD FTMS 0 0 0 11817 22354.630859375 0.028208783918550917 58 -1.591552734375 9 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 23.789781309258295 0.1548179064208189 1 NY{I|L} 3 6 27.435 0 0 2.1208 0 0 885.4185047834 0 885.4185047834 0 9.247425010840047 0 0 0 0 0 0 0.4247425010840047 + NY{I|L} 2.1208 + + 18 NaN NaN 112316.1 NaN 9054 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11827 54.966 NaN 122300 35 0 7297.2 0.262 + 6452 FPIENRDVL 9 54 551.7982125819159 1101.5818722306317 2 551.7984619140625 MULTI HCD FTMS 0 0 0 11817 26427.07421875 0.4542267270715015 8 -0.22254180908203125 10 Unmodified _FPIENRDVL_ ENSG00000182446|ENST00000331134|NPLOC4;ENST00000576713.6_1_17:79534551-79539120:-|nuORF;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant 13.614867670302875 0.2427269026982664 1 E{I|L}PE 4 8 24.702 0 0 2.2424 0 0 615.3347035138687 0 615.3347035138687 0 6.743609930009278 0 0 0 0 0 0 0 E{I|L}PE 2.2424 - 13 NaN NaN 100390.1 NaN 9055 2770 11817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11829 54.971 NaN 2504700 35 0 617330 0.327 + 30884 VQPTQDVIS 9 70 493.76105763622076 985.5075623392415 2 493.7614440917969 MULTI HCD FTMS 0 0 0 11828 2016166.375 0.8840835126878646 1 -0.0328216552734375 1 Unmodified _VQPTQDVIS_ ENST00000583370.5_1_17:25877599-25885155:+|nuORF 66.45667989310934 0.010234776021261575 1 {[TV]|[{I|L}S]}[QP]QDVS{I|L} 9 4 + 79.121 0 0 8.0285 8.0285 87.041 0 0 0 0.9813624419633271 9.018637558036673 0.9813624419633271 0.9813624419633271 0 1.8494850021680094 1.6989700043360187 1.1307196863200843 0.4247425010840047 {[TV]|[{I|L}S]}[QP]QDVS{I|L};[TP]{I|L}NQDVS{I|L};[TP]{I|L}QNDVS{I|L};{[TV]|[{I|L}S]}[QP]QDVVT;{[TV]|[{I|L}S]}[QP][AG]DVS{I|L};[TP]{I|L}NQDVVT;[TP]{I|L}GGQDVS{I|L};[TP]{I|L}N[AG]DVS{I|L};[TP]{I|L}QNDVVT;[TP]{I|L}[AG]NDVS{I|L} 8.0285;7.9289;7.8034;7.1134;7.0941;7.0138;6.9945;6.9945;6.8882;6.869 -;-;-;-;-;-;-;-;-;- 1163 NaN NaN 460192.7 NaN 9056 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11830 54.975 NaN 3542800 35 0 672060 0.261 + 4982 FAYDGKDYL 9 121 546.2559545500517 1090.4973561669033 2 546.2561645507812 MULTI HCD FTMS 0 0 0 11828 2046606.75 0.3861048280772332 -4 0.11137008666992188 2 Unmodified _FAYDGKDYL_ ENSG00000204592|ENST00000376630|HLA-E 99.75527289724121 0.004270341300239591 1 {[MS]|[{M(Oxidation (M))|F}A]}YD[KG]DY{I|L} 9 0 + 60.053 0 0 5.507 5.507 84.732 0 0 0 3.6783384858901655 19.852321400245998 3.6783384858901655 5.544701178513108 0 1.9247425010840047 0 0.8921590589602533 0 + + {[MS]|[{M(Oxidation (M))|F}A]}YD[KG]DY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}K[R{M(Oxidation (M))|F}]YS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{[NV]|[RG]}YS{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KG[{M(Oxidation (M))|F}V]YAE;{[YD]|[{M(Oxidation (M))|F}M]}K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KG[W{M(Oxidation (M))|F}]Y{I|L};{M(Oxidation (M))|F}AY[VS]NDY{I|L};[YT][QA][{M(Oxidation (M))|F}V]YAE;{[YD]|[{M(Oxidation (M))|F}M]}K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}E;[YT]AAG[{M(Oxidation (M))|F}V]YAE 5.507;4.9985;4.9577;4.4632;3.7828;3.543;3.509;3.3182;3.2944;3.0421 +;-;-;-;-;-;-;-;-;- + 2716 NaN NaN 619872.3 NaN 9057 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11831 54.979 NaN 769550 35 0 192470 0.261 + 10704 IPYGERITL 9 87 531.3028991085027 1060.5912452838054 2 531.3033447265625 MULTI HCD FTMS 0 0 0 11828 352019.6875 0.8103033691312399 2 -0.059055328369140625 3 Unmodified _IPYGERITL_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 49.52724829834842 0.03223213920720493 1 {I|L}PYGER{I|L}T{I|L} 9 0 + 74.742 0 0 7.0472 7.0472 93.106 0 0 0 56.325226199174125 10.884998051534922 10.884998051534922 21.760912590556785 0 1.7544321917401078 1.5228787452803376 0.4978499570595206 0.28872548999643577 + + {I|L}PYGER{I|L}T{I|L};{I|L}PY[RD]A{I|L}T{I|L};{I|L}PY[RD]AT{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}V[TP]R{I|L}T{I|L};{[{M(Oxidation (M))|F}D]|MM}VQ[KA]Q{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VQ{[NV]|[RG]}VK{I|L} 7.0472;4.9954;4.2692;0.28846;0.17328;0.079367 +;-;-;-;-;- + 369 + NaN NaN 216090.6 NaN 9058 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11832 54.982 NaN 469080 35 0 69838 0.261 + 20839 PHVQIPFEI 9 74 540.2987027671089 NaN 0 540.2845458984375 PEAK HCD FTMS 0 0 0 11828 9657.9677734375 1 0 0 4 Unmodified _PHVQIPFEI_ ENSG00000115616|ENST00000233969|SLC9A2 10.073929032068715 0.24642998803896465 1 EE{I|L}KDV 6 8 29.641 0 0 2.7482 0 0 131.1234136041483 231.0773867242797 362.20080032842804 0 0 0 0 0 0 0 0 0 EE{I|L}KDV 2.7482 - 398 + NaN NaN 155683.3 NaN 9059 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11833 54.986 NaN 349820 35 0 32247 0.261 + 9760 HYILHNSFF 9 76 589.2930832030781 1176.5716134729562 2 589.2935791015625 MULTI HCD FTMS 0 0 0 11828 129150.703125 0.08613137555859628 32 -0.8850860595703125 5 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 89.40071534611396 0.0045416704840156395 1 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 85.773 0 0 7.2901 7.2901 90.336 0 0 0 18.57963467823147 14.973024840566467 14.973024840566467 9.208187539523749 0 1.8723637474483468 1.5228787452803376 0.9247425010840047 0 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[SG]{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}QG{[WN]|[YH]}{M(Oxidation (M))|F};HYV[R{M(Oxidation (M))|F}]QQ{[TV]|[{I|L}S]};HYV[RV][C(Carbamidomethyl (C))K]{[ES]|[DT]|[{I|L}C]};HY[R{M(Oxidation (M))|F}]VQQ{[TV]|[{I|L}S]} 7.2901;6.5074;5.7109;5.2874;4.7978;4.3922;3.196;2.5606;2.3871;1.9313 +;-;-;+;-;-;-;-;-;- + 363 NaN NaN 143660.4 NaN 9060 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11834 54.989 NaN 263430 35 0 26134 0.262 + 18241 MPDVDLHL 8 65 478.23169742748837 954.4488419217768 2 478.2313537597656 MULTI HCD FTMS 0 0 0 11828 142102.6875 0.19249322781400033 22 -0.5929222106933594 6 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 1 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 59.148 0 0 6.1971 6.1971 85.35 0 0 0 4.2216751192405155 4.2216751192405155 4.2216751192405155 4.2216751192405155 0 2.055462187404089 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 6.1971;5.7548 +;+ + 175 + NaN NaN 136027.5 NaN 9061 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11835 54.992 NaN 482660 35 0 41985 0.261 + 27311 SYQKVMALW 9 83 571.2893161582517 1140.5640793833034 2 571.2904663085938 MULTI HCD FTMS 0 0 0 11828 92207.296875 0.48271376417984213 4 -0.09801101684570312 7 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 49.55428908609986 0.03219431099695407 1 {M(Oxidation (M))|F}A{I|L}AD 5 7 45.42 0 0 3.9822 0 0 605.31840712715 0 605.31840712715 0 12.335456788775893 0 0 0 1.6747425010840047 0 0 0 {M(Oxidation (M))|F}A{I|L}AD 3.9822 - 696 NaN NaN 151177.9 NaN 9062 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11836 54.996 NaN 862320 35 0 48368 0.261 + 2497 DSEYSKVRL 9 107 548.7872251384427 NaN 0 548.78759765625 PEAK HCD FTMS 0 0 0 11828 61306.09765625 0.8005611552626478 1 -0.0328216552734375 8 Unmodified _DSEYSKVRL_ ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-4|SCN9A 25.399314129420986 0.1511568710901456 1 SQ 2 8 11.37 0 0 1.0378 0 0 132.13060593501626 745.3134116024802 877.4440175374964 0 0 0 0 0 0 0 0.3054621874040891 0.4247425010840047 SQ 1.0378 - 414 + NaN NaN 223751.5 NaN 9063 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11837 54.999 NaN 96097 35 0 10949 0.261 + 3013 EACPDPESLEF 11 49 618.7591446095554 1235.5037362859107 2 619.2603759765625 MULTI HCD FTMS 0 0 0 11828 43862.3359375 0.8191296015117421 1 -0.0328216552734375 9 Unmodified _EACPDPESLEF_ ENSG00000142449|ENST00000600128|FBN3 2.9952420565917617 0.40578455234410343 1 E{M(Oxidation (M))|F} 2 9 20.969 0 0 1.6972 0 0 941.3851058640454 0 941.3851058640454 0 18.750612633916997 0 0 0 0 0 0 0 + E{M(Oxidation (M))|F} 1.6972 + + 9 NaN NaN 100160.3 NaN 9064 2771 11828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11839 55.004 NaN 2494100 35 0 364830 0.327 + 13916 KYQIINEEF 9 107 592.3032305433263 1182.5919081534526 2 592.3036499023438 MULTI HCD FTMS 0 0 0 11838 1470951.75 0.6392962338849201 2 -0.04904937744140625 1 Unmodified _KYQIINEEF_ ENSG00000163755|ENST00000296051|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3 191.38036244623 2.972967745938989E-13 1 [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F} 9 0 + 98.317 0 0 8.3137 8.3137 87.276 0 0 0 0.45757490560674796 16.478174818886373 0.45757490560674796 0.45757490560674796 0 2.6549471895720984 0 0.5629529932484498 2.055462187404089 + + [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F};{[HG]|PP}PQ{I|L}{I|L}NEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}NEE{M(Oxidation (M))|F};[YQ]K{I|L}{I|L}NEE{M(Oxidation (M))|F};[YK]Q{I|L}{I|L}GGEE{M(Oxidation (M))|F};[YK][AG]{I|L}{I|L}NEE{M(Oxidation (M))|F};{[HG]|PP}PQ{I|L}{I|L}GGEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]K{I|L}KNEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}GGEE{M(Oxidation (M))|F};[YQ]K{I|L}{I|L}GGEE{M(Oxidation (M))|F} 8.3137;8.275;7.9143;7.7862;7.535;7.535;7.5;7.1637;7.1356;7.0076 +;-;-;-;-;-;-;-;-;- + 3314 NaN NaN 464827.6 NaN 9065 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11840 55.008 NaN 1148400 35 0 211900 0.264 + 17416 LYRELYHKL 9 92 412.2368813780032 1233.6888147342097 3 412.2483825683594 MULTI HCD FTMS 0 0 0 11838 13873.822265625 0.051480015187893656 14 -0.3666419982910156 2 Unmodified _LYRELYHKL_ ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;nc|ENSG00000183091|P20929-4|NEB 10.150570793230772 0.27265765907388223 1 MKK{I|L}WD{I|L} 7 7 45.17 0 0 3.6613 0 0 0 316.1404207818969 316.1404207818969 -3.3230990940241156 0 -3.3230990940241156 0 0 0 0 0.6989700043360187 0 MKK{I|L}WD{I|L} 3.6613 - 785 + NaN NaN 251364.9 NaN 9066 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11841 55.012 NaN 1313400 35 0 142260 0.261 + 22051 QGLELAREL 9 105 514.7900186742852 1027.5654844153703 2 514.790771484375 MULTI HCD FTMS 0 0 0 11838 509294.375 0.8548617758174507 -3 0.09850692749023438 3 Unmodified _QGLELAREL_ ENSG00000123999|ENST00000243786|INHA 53.832793166522166 0.026208976789938845 1 {[QG]|[NA]}{I|L}R{[CP]|[EA]}{I|L}E{I|L} 9 3 + 75.61 0 0 7.3582 7.3582 93.002 0 0 0 20.928085986472837 16.478174818886366 16.478174818886366 16.549471895720977 0 1.579689690656103 1.5228787452803376 0.23965182871044374 1.2856668758921828 {[QG]|[NA]}{I|L}R{[CP]|[EA]}{I|L}E{I|L};{[QG]|[NA]}{I|L}R{[CP]|[EA]}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}RQQ{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[VG]QQ{I|L}E{I|L};{[QG]|[NA]}{I|L}K{NN|[MP]|[D{I|L}]|[EV]}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}R[PS][KG]E{I|L};{[QN]|[E{I|L}]|[KN]}RQQE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[VG]QQE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}A{[RE]|[WV]}{I|L}NA{I|L};{[QN]|[E{I|L}]|[KN]}R[PS]S{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 7.3582;5.7477;5.3215;4.4202;4.3613;3.7635;3.711;2.8096;2.41;2.1975 -;-;-;-;-;-;-;-;-;- 765 NaN NaN 280901.8 NaN 9067 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11842 55.015 NaN 545460 35 0 98773 0.261 + 24644 RYLQTLTTI 9 74 554.821573921432 1107.628594909664 2 554.8215942382812 MULTI HCD FTMS 0 0 0 11838 239183.359375 0.10956023500977041 10 -0.2584266662597656 4 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 53.40400417844725 0.026808823219830042 1 TVQT{I|L}TT{I|L} 8 3 66.209 0 0 5.9776 0 0 232.14215285468907 0 232.14215285468907 0 55.75170683728075 0 0 0 0.7614393726401688 0 1.25 0 TVQT{I|L}TT{I|L} 5.9776 - 633 NaN NaN 159890.6 NaN 9068 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11843 55.018 NaN 271660 35 0 45738 0.261 + 34982 YSSILFLTCFS 11 67 640.8172817606622 NaN 0 640.7973022460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YSSILFLTCFS_ ENSG00000165621|ENST00000541038|OXGR1 8.745405648335112 0.31731194618894887 1 STP{I|L}{[YC]|[HE]}PT 8 8 29.858 0 0 2.3333 0 0 165.11446967191188 249.0876406305297 414.2021103024416 0 0 0 0 0 0 0 0.9247425010840047 0 STP{I|L}{[YC]|[HE]}PT 2.3333 - 155 + NaN NaN 126977.5 NaN 9069 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11844 55.022 NaN 193720 35 0 21560 0.264 + 18213 MPDLPEKL 8 51 471.7521049018219 941.4896568704438 2 471.751953125 MULTI HCD FTMS 0 0 0 11838 92647.15625 0.1301487098253176 10 -0.2584266662597656 6 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 20.41453444215458 0.4435908194320988 1 MPD{I|L}[EP][K{I|L}] 8 0 + 38.619 0 0 4.1019 4.1019 88.573 0 0 0 23.161837734644593 6.210149894766701 6.210149894766701 26.690840781556204 0 1.0994850021680094 0 0 0 + + MPD{I|L}[EP][K{I|L}];[DP]M{I|L}[EP][K{I|L}] 4.1019;1.267 +;- + 22 + NaN NaN 112014 NaN 9070 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11845 55.025 NaN 274940 35 0 24982 0.261 + 7823 FYQPKIQQF 9 74 599.8163570958842 1197.6181612585683 2 599.8164672851562 MULTI HCD FTMS 0 0 0 11838 67721.078125 0.3491428772589086 2 -0.04904937744140625 7 Unmodified _FYQPKIQQF_ chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI 57.47134341890925 0.0211188941628804 1 Q{M(Oxidation (M))|F} 2 7 27.276 0 0 2.2775 0 0 904.4814677184243 0 904.4814677184243 0 7.928833987635638 0 0 0 0.3054621874040891 0 0 0.3252574989159953 + Q{M(Oxidation (M))|F} 2.2775 + + 511 NaN NaN 125369.5 NaN 9071 2772 11838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11847 55.03 NaN 806630 35 0 97293 0.327 + 18596 MVSDEYEQL 9 100 557.2419426851561 1112.4693324371121 2 557.2420043945312 MULTI HCD FTMS 0 0 0 11846 350168 0.701777450884116 3 -0.07500839233398438 1 Unmodified _MVSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 133.0521902211835 0.0004198702180815479 1 {[ET]|[MV]}SDEYEQ{I|L} 9 0 + 71.427 0 0 6.4206 6.4206 89.579 0 0 0 6.950054373600352 43.30947989455069 6.950054373600352 9.735906733596224 0 2.388210492164445 0 1.1549471895720984 0.3054621874040891 + + {[ET]|[MV]}SDEYEQ{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YEQ{I|L};{[QN]|[E{I|L}]|[KN]}[CS]EYEQ{I|L};{[QN]|[E{I|L}]|[KN]}T[DC]YEQ{I|L};{[ET]|[MV]}SDEYE[AG]{I|L};{I|L}{[CT]|[{M(Oxidation (M))|F}G]}DEYEQ{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[CS]EYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}T[DC]YE[AG]{I|L};{[ET]|[MV]}SDEYADA{I|L} 6.4206;5.5454;5.34;5.3246;5.3183;5.1944;4.7177;4.5123;4.4969;3.8782 +;-;-;-;-;-;-;-;-;- + 954 NaN NaN 210053 NaN 9072 2773 11846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11848 55.034 NaN 650210 35 0 91674 0.261 + 15626 LPEEIREPAL 10 104 583.824312435956 1165.634071938712 2 583.82470703125 MULTI HCD FTMS 0 0 0 11846 237825.859375 0.7574135273423862 2 -0.0389556884765625 2 Unmodified _LPEEIREPAL_ ENSG00000117697|ENST00000366977|NSL1;ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 53.31671820480216 0.06572736166898346 1 {I|L}PEER{I|L}E 7 5 64.619 0 0 5.5437 0 0 0 296.16147791080317 296.16147791080317 33.36651641969809 0 0 0 0 2.028659694992122 1.3979400086720375 1.055462187404089 0 {I|L}PEER{I|L}E 5.5437 - 4328 + NaN NaN 177033 NaN 9073 2773 11846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11849 55.038 NaN 432080 35 0 25573 0.261 + 10202 IGASCRVCSL 10 77 504.7524422807752 1007.4903316283504 2 504.7525329589844 MULTI HCD FTMS 0 0 0 11846 175605.046875 0.5616082269562802 4 -0.0911865234375 3 Unmodified _IGASCRVCSL_ REV__ENST00000425895.5_1_22:25016477-25016929:+|nuORF 21.536976647645854 0.3096624038397699 1 TP{I|L}NQDV 7 -1 58.683 0 0 5.8247 0 0 0 237.08521448306877 237.08521448306877 24.430570098499587 0 0 0 0 1.1307196863200843 1.2218487496163564 0.2742275032520141 0 TP{I|L}NQDV 5.8247 - 356 + NaN NaN 147499.3 NaN 9074 2773 11846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11850 55.041 NaN 321000 35 0 60763 0.261 + 5692 FPAGYMYPSM 10 59 598.2429929396999 1194.4714329461997 2 598.2429809570312 MULTI HCD FTMS 0 0 0 11846 107774.203125 0.38831179388697146 -23 0.5145378112792969 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 85.35673624503755 0.0013587972211772845 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 63.435 0 0 5.3107 0 0 64.00128682686734 0 64.00128682686734 0 52.46584697476848 0 0 0 0.9247425010840047 0 2.329689690656103 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.3107 - 323 + NaN NaN 134702.7 NaN 9075 2773 11846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11851 55.045 NaN 254210 35 0 20971 0.261 + 26934 SYLENVDHF 9 85 562.255488604503 1122.4964242758058 2 562.250732421875 MULTI HCD FTMS 0 0 0 11846 73494.90625 0.24940169138304094 -6 0.1704254150390625 5 Unmodified _SYLENVDHF_ ENSG00000108509|ENST00000348066|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;nc|ENSG00000108509|O94983-5|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 18.1463463914782 0.20357593197100715 1 DY{[TV]|[{I|L}S]} 4 7 23.698 0 0 2.1112 0 0 626.2907582013687 0 626.2907582013687 0 8.508337601396859 0 0 0 0.4247425010840047 0 0.3252574989159953 0 DY{[TV]|[{I|L}S]} 2.1112 - 96 NaN NaN 125436.3 NaN 9076 2773 11846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11852 55.048 NaN 283030 35 0 85981 0.263 + 21422 PVSGLVPSL 9 60 434.7601193225069 867.5056857118138 2 434.7604064941406 MULTI HCD FTMS 0 0 0 11846 58237.4609375 0.7531682109131059 2 -0.0389556884765625 6 Unmodified _PVSGLVPSL_ REV__ENST00000571365.1_1_17:4843824-4844115:+|nuORF;REV__ENST00000576229.5_2_17:4843824-4845751:+|nuORF 34.10243960390752 0.09241788333544565 1 S{I|L} 2 -1 34.464 0 0 3.9728 0 0 649.379406861893 0 649.379406861893 0 18.979400086720375 0 0 0 0.9247425010840047 0 0.4247425010840047 0 S{I|L} 3.9728 + + 29 NaN NaN 131700.7 NaN 9077 2773 11846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11854 55.053 NaN 814990 35 0 179440 0.326 + 18333 MPFRGYAVL 9 95 535.2792981134158 1068.5440432936316 2 535.2783813476562 MULTI HCD FTMS 0 0 0 11853 295611.15625 0.9016620048430858 -1 0.022815704345703125 1 Oxidation (M) _M(Oxidation (M))PFRGYAVL_ ENSG00000169710|ENST00000306749|FASN 46.020951573049366 0.037705236580089195 1 VAGYC{I|L}A{I|L}E 9 8 65.57 0 0 6.1364 0 0 131.09458588295826 0 131.09458588295826 0 40.38729899738436 0 0 0 2.263632853717045 0 1.3882104921644451 0 VAGYC{I|L}A{I|L}E 6.1364 - 1462 + NaN NaN 200948 NaN 9078 2774 11853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11855 55.057 NaN 386520 35 0 57664 0.261 -1 0 76 570.306936850039 569.299660383439 1 570.3087158203125 MULTI HCD FTMS 0 0 0 11853 196361.8125 0.4900385412653576 3 -0.06837081909179688 2 NaN NaN 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}DT 4 -1 19.157 0 0 3.365 0 0 0 77.09119594405766 77.09119594405766 6.76091259055681 0 0 0 0 0 1.0969100130080565 0.3494850021680094 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}DT 3.365 - 73 NaN NaN 154594.7 NaN 9079 2774 11853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11856 55.061 NaN 298670 35 0 8963.5 0.261 + 22792 QYLEKYYNL 9 78 617.311434846243 1232.6083167592858 2 617.3112182617188 MULTI HCD FTMS 0 0 0 11853 144254 0.6506369080888796 4 -0.10450363159179688 3 Unmodified _QYLEKYYNL_ chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10;ENSG00000166670|ENST00000279441|MMP10 66.45667989310934 0.010234776021261575 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L} 10 7 + 62.669 0 0 5.0842 5.0842 85.661 0 0 0 15.295700576058536 15.026975159433533 15.026975159433533 9.164539485499255 0 0.4247425010840047 1.5228787452803376 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}[CG]{I|L};[Y{I|L}]Q{[HG]|PP}TE{I|L}C(Carbamidomethyl (C)){I|L};[Y{I|L}]Q{[HG]|PP}TE{I|L}[CG]{I|L};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L};[YQ]{I|L}EKYYN{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}[YK]YM{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]{M(Oxidation (M))|F}K[HC];[Y{I|L}][AG]{[HG]|PP}TE{I|L}C(Carbamidomethyl (C)){I|L};[{M(Oxidation (M))|F}T][VG]{[HG]|PP}TE{I|L}C(Carbamidomethyl (C)){I|L} 5.0842;4.3407;3.8433;3.0998;2.9913;2.8539;2.8095;2.3796;2.1961;2.1272 -;-;-;-;-;+;-;-;-;- + 843 NaN NaN 140023.7 NaN 9080 2774 11853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11857 55.064 NaN 494730 35 0 45866 0.261 + 27378 SYSPQAFKF 9 89 537.7666403552818 1073.5187277773634 2 537.7674560546875 MULTI HCD FTMS 0 0 0 11853 51075.68359375 0.2793153984736978 5 -0.12408065795898438 4 Unmodified _SYSPQAFKF_ ENSG00000131023|ENST00000543571|LATS1;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;nc|ENSG00000131023|O95835-2|LATS1 39.94969957227396 0.06557568441294001 1 DG{M(Oxidation (M))|F} 3 8 31.198 0 0 2.9061 0 0 736.3913301716979 0 736.3913301716979 0 14.235162698957279 0 0 0 0.8494850021680094 0 0 0 DG{M(Oxidation (M))|F} 2.9061 - 284 + NaN NaN 168416.6 NaN 9081 2774 11853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11859 55.069 NaN 3892400 35 0 516880 0.327 + 22303 QPFREAIAL 9 96 522.7953228393754 1043.5760927455508 2 522.795654296875 MULTI HCD FTMS 0 0 0 11858 2824212.5 0.9645669560263651 1 -0.036052703857421875 1 Unmodified _QPFREAIAL_ ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 69.10491478415734 0.009377850133389008 1 {M(Oxidation (M))|F}R{[MS]|[{M(Oxidation (M))|F}A]}{I|L}A{I|L} 7 3 34.734 0 0 3.3284 0 0 207.10090834785314 0 207.10090834785314 0 -0.9747320519376572 -0.9747320519376572 0 0 0.9247425010840047 0 1.1549471895720984 1.5 {M(Oxidation (M))|F}R{[MS]|[{M(Oxidation (M))|F}A]}{I|L}A{I|L} 3.3284 - 1053 NaN NaN 672372.4 NaN 9082 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11860 55.073 NaN 1693000 35 0 106240 0.261 + 6012 FPDRIMNTF 9 108 578.7764311978499 1155.5383094624997 2 578.7766723632812 MULTI HCD FTMS 0 0 0 11858 979465.8125 0.36708220642283235 -12 0.31390380859375 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 166.76915356408847 5.584250141028017E-09 1 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 108.17 0 0 9.3609 9.3609 94.331 0 0 0 77.07600226180736 11.478174818886373 11.478174818886373 10.089869102636158 0 3.142159058960253 0 2.1989700043360187 0.899649864804614 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};M{I|L}DY[RP]NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDRQV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};M{I|L}DY[RP]GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9.3609;8.4877;8.3415;8.2996;7.7819;7.6908;7.5446;6.7802;6.7207;6.5417 +;+;-;-;-;-;-;-;-;- + 4430 + NaN NaN 351066.7 NaN 9083 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11861 55.077 NaN 1152100 35 0 142130 0.261 + -1 EMLDCLLEM 9 93 593.2452042705696 1184.4758556079391 2 593.2456665039062 MULTI HCD FTMS 0 0 0 11858 365418.34375 0.5576334406089253 -6 0.1636962890625 3 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 1 {I|L}V{I|L}DE 5 -1 68.268 0 0 5.7635 0 0 0 612.1474626922004 612.1474626922004 41.32937987061139 0 0 0 0 1.4802046884880937 1.6989700043360187 0.930884548956689 0 {I|L}V{I|L}DE 5.7635 - 603 + NaN NaN 268689.2 NaN 9084 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11862 55.08 NaN 559500 35 0 78522 0.261 + 8904 HPDEPLYSF 9 79 552.7534742021935 1103.492395471187 2 552.7529296875 MULTI HCD FTMS 0 0 0 11858 227042.515625 0.9581364596880296 -4 0.09801101684570312 4 Unmodified _HPDEPLYSF_ ENSG00000119041|ENST00000263956|GTF3C3 64.23631603340823 0.01165516075559909 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DVQQS{M(Oxidation (M))|F} 9 5 + 51.48 0 0 4.6652 4.6652 82.844 0 0 0 2.5403293664772875 14.788559305164164 2.5403293664772875 4.362370141699152 0 1 1.2218487496163564 0.7614393726401688 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DVQQS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[TP]QQS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DVQ[AG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DV[AG]QS{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}YDVQQS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[TP]Q[AG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[TP][AG]QS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[HV]{[DS]|[MA]|[CV]|TT}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[TP]QQS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DV[AG][AG]S{M(Oxidation (M))|F} 4.6652;4.2699;3.8308;3.8308;3.8308;3.4355;3.4355;3.1678;3.0031;3.0003 -;-;-;-;-;-;-;-;-;- 771 NaN NaN 177611.3 NaN 9085 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11863 55.083 NaN 311460 35 0 32669 0.261 -1 DECCFMRL 8 73 573.7230486235858 1145.4315443139715 2 573.7235107421875 MULTI HCD FTMS 0 0 0 11858 105609.4296875 0.9878663792662461 -1 0.016139984130859375 5 2 Carbamidomethyl (C),Oxidation (M) _DEC(Carbamidomethyl (C))C(Carbamidomethyl (C))FM(Oxidation (M))RL_ ENST00000578730.1_1_4:1245335-1281818:+|nuORF;ENST00000581398.1_1_4:1245404-1245611:+|nuORF 12.531546534597751 0.5015908124873912 1 {M(Oxidation (M))|F}VR{I|L} 4 -1 25.203 0 0 2.2003 0 0 612.0976952922903 0 612.0976952922903 0 6.619543704721593 0 0 0 1.25 0 0 0 {M(Oxidation (M))|F}VR{I|L} 2.2003 - 61 + NaN NaN 119868.9 NaN 9086 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11864 55.087 NaN 178650 35 0 28499 0.264 + 10244 IILFSQYLRN 10 56 422.911452360537 1265.712527681811 3 422.9116516113281 MULTI HCD FTMS 0 0 0 11858 85481.640625 0.909822119180033 1 -0.036052703857421875 6 Unmodified _IILFSQYLRN_ ENSG00000170482|ENST00000348729|SLC23A1;ENST00000504513.1_2_5:138715022-138715755:-|nuORF;ENST00000506512.1_1_5:138715578-138715872:-|nuORF;nc|ENSG00000170482|Q9UHI7-2|SLC23A1;SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.1538 0 0 1100.6336988017313 0 1100.6336988017313 0 10.6246936830415 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1538 + + 18 + NaN NaN 114302.2 NaN 9087 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11865 55.09 NaN 268740 35 0 27581 0.261 + 35794 YYNVLKEEEPM 11 69 472.22375800639867 1413.649444619396 3 472.22393798828125 MULTI HCD FTMS 0 0 0 11858 49432.93359375 0.6839557458778888 1 -0.036052703857421875 7 Unmodified _YYNVLKEEEPM_ REV__ENSG00000109436|ENST00000442267|TBC1D9 4.715918219556657 0.3982382512160552 1 M 1 -1 19.604 0 0 1.3868 0 0 1264.5982341475194 0 1264.5982341475194 0 6.3033376849500655 0 0 0 0.5 0 0 0 M 1.3868 + + 59 + NaN NaN 123260.9 NaN 9088 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11866 55.093 NaN 186400 35 0 20394 0.261 + 18143 MPDGQFKDISL 11 63 633.8053974265821 1265.596241919964 2 633.805908203125 MULTI HCD FTMS 0 0 0 11858 120232.109375 0.28245239073383066 -8 0.209381103515625 8 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 55.466997841574724 0.05896858946189219 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 69.588 0 0 5.4984 5.4984 90.514 0 0 0 3.4768294003359586 61.00434505047306 3.4768294003359586 23.79493455131807 0 2.1307196863200843 0 1.1861818737241734 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L} 5.4984;3.6183 +;- + 100 NaN NaN 110467.6 NaN 9089 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11867 55.097 NaN 78755 35 0 6602.4 0.261 + 15009 LLLLLLLLLLT 11 49 625.9566052729657 NaN 0 626.310546875 PEAK HCD FTMS 0 0 0 11858 31025.513671875 1 0 0 9 Unmodified _LLLLLLLLLLT_ REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__ENST00000536100.1_1_12:133182714-133186967:-|nuORF 0 0.34212014346876374 1 QK 2 -1 10.969 0 0 0.8776 0 0 262.46328348783817 728.2747286432249 990.738012131063 0 0 0 0 0 0 0 0 0 QK 0.8776 - 6 + NaN NaN 91839.9 NaN 9090 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11868 55.1 NaN 44356 35 0 3807.7 0.261 + 23599 RPFLFLHGLW 10 31 643.3635470983983 NaN 0 643.69140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _RPFLFLHGLW_ REV__ENSG00000178971|ENST00000651323|CTC1;REV__nc|ENSG00000178971|Q2NKJ3-2|CTC1 0.45834013312273997 0.33979201340002624 1 C 1 -1 1.7827 0 0 0.13877 0 0 495.96334800363394 682.7199190729124 1178.6832670765464 0 0 0 0 0 0 0 0 0 C 0.13877 - 1 + NaN NaN 101061.8 NaN 9091 2775 11858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11870 55.105 NaN 119470 35 0 10554 0.327 -1 0 41 647.0579223632812 NaN 0 647.0579223632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106206.1 NaN 9092 2776 11869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11871 55.109 NaN 466820 35 0 43816 0.261 + 10852 IVIKYKDYF 9 81 594.8366832006712 1187.6588134681424 2 594.836181640625 MULTI HCD FTMS 0 0 0 11869 55297.55859375 0.5201336943115508 2 -0.052310943603515625 2 Unmodified _IVIKYKDYF_ ENSG00000046774|ENST00000247452|MAGEC2 11.640296217721598 0.25978676193971967 1 [{I|L}V]{I|L} 3 6 24.437 0 0 2.0576 0 0 0 859.4007012457392 859.4007012457392 6.478174818886373 0 0 0 0 0 1.6989700043360187 0 0 + [{I|L}V]{I|L} 2.0576 + + 182 NaN NaN 170560.9 NaN 9093 2776 11869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11872 55.113 NaN 130200 35 0 23434 0.261 -1 KYMYFTVVM 9 50 607.2850141724352 1212.5554754116704 2 607.2844848632812 MULTI HCD FTMS 0 0 0 11869 86576.0390625 0.40612193172105665 7 -0.17346572875976562 3 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 39.94969957227396 0.06557568441294001 1 TVV{M(Oxidation (M))|F} 4 -1 55.433 0 0 4.5716 0 0 748.3260168673797 0 748.3260168673797 0 48.44335023848103 0 0 0 1.5 0 0.8494850021680094 0 TVV{M(Oxidation (M))|F} 4.5716 + + 87 NaN NaN 104444.6 NaN 9094 2776 11869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11873 55.116 NaN 248920 35 0 39413 0.263 + 35369 YYDDLKYRYF 10 52 482.56244223909596 1444.665497317488 3 482.5627746582031 MULTI HCD FTMS 0 0 0 11869 55699.79296875 1 0 0 4 Unmodified _YYDDLKYRYF_ ENSG00000113532|ENST00000231461|ST8SIA4 14.218169984304629 0.37812005199054677 1 YY 2 8 45.217 0 0 3.1299 0 0 0 1115.5166381574459 1115.5166381574459 37.11758134947864 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.1299 + + 12 + NaN NaN 114883.4 NaN 9095 2776 11869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11875 55.121 NaN 8913500 35 0 532390 0.327 + 2488 DSANDGFVRL 10 122 547.2670126868722 1092.5194724405444 2 547.2672729492188 MULTI HCD FTMS 0 0 0 11874 4357350.5 0.8276165998900082 1 -0.0361328125 1 Unmodified _DSANDGFVRL_ ENSG00000169813|ENST00000682386|HNRNPF 224.5116832123842 2.896731533678781E-32 1 DSANDG{M(Oxidation (M))|F}V{I|L}R 10 2 + 106.25 0 0 9.7248 9.7248 88.717 0 0 0 0.12167070079352982 0.12167070079352982 0.12167070079352982 0.12167070079352982 0 2.6721675119240516 1.2218487496163564 0.8609243748081782 0.6694451763165201 DSANDG{M(Oxidation (M))|F}V{I|L}R;{[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}VR{I|L};DSAGGDG{M(Oxidation (M))|F}V{I|L}R;{[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}RV{I|L};DSANDG{M(Oxidation (M))|F}{I|L}VR;{[DS]|[MA]|[CV]|TT}AGGDG{M(Oxidation (M))|F}VR{I|L};{[QG]|[NA]}DSDG{M(Oxidation (M))|F}VR{I|L};[DN]ASDG{M(Oxidation (M))|F}VR{I|L};{[DS]|[MA]|[CV]|TT}AND[R{M(Oxidation (M))|F}]GV{I|L};DSAGGDG{M(Oxidation (M))|F}{I|L}VR 9.7248;9.7136;8.8859;8.0896;7.9997;7.5784;7.5666;7.4954;7.4465;7.1609 -;+;-;-;-;-;-;-;-;- + 2449 + NaN NaN 604827.8 NaN 9096 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11876 55.126 NaN 590080 35 0 123400 0.261 + 16444 LSPQDQVSL 9 69 493.76105763622076 985.5075623392415 2 493.7613220214844 MULTI HCD FTMS 0 0 0 11874 316958.75 0.1389855562277963 7 -0.19011688232421875 2 Unmodified _LSPQDQVSL_ REV__ENSG00000080802|ENST00000541284|CNOT4;REV__nc|ENSG00000080802|O95628-2|CNOT4;REV__nc|ENSG00000080802|O95628-3|CNOT4;REV__nc|ENSG00000080802|O95628-4|CNOT4;REV__nc|ENSG00000080802|O95628-6|CNOT4;REV__nc|ENSG00000080802|O95628-7|CNOT4;REV__nc|ENSG00000080802|O95628-8|CNOT4;REV__nc|ENSG00000080802|O95628-9|CNOT4;REV__nc|ENSG00000080802|O95628|CNOT4 41.95555342248728 0.056367691549927025 1 EQNDVS{I|L} 7 -1 74.478 0 0 7.5573 0 0 182.14222914863439 0 182.14222914863439 0 55.0489099702023 0 0 0 1.6237125054200234 0 0.7742275032520141 0.4247425010840047 EQNDVS{I|L} 7.5573 - 361 NaN NaN 174111.4 NaN 9097 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11877 55.129 NaN 430400 35 0 42040 0.261 -1 KYAMMFAEL 9 92 568.2614597677415 1134.5083666022829 2 568.2618408203125 MULTI HCD FTMS 0 0 0 11874 164059.890625 0.6753762645335244 1 -0.0361328125 3 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 18.1463463914782 0.20357593197100715 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[HQ]DANK 9 -1 + 41.609 0 0 3.6676 3.6676 80.444 0 0 0 1.9382002601611177 1.254471812167779 1.254471812167779 1.9382002601611177 0 0.3807196863200844 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[HQ]DANK;{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}WDANK;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[YC(Carbamidomethyl (C))]KE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[YC(Carbamidomethyl (C))]EK{I|L};{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}DAE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[HQ]DNAK;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[HQ]DAGGK;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[YC(Carbamidomethyl (C))]E{I|L}K;{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}WDAGGK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AE{I|L} 3.6676;3.4967;3.3619;3.0465;2.9504;2.8913;2.8559;2.7812;2.6851;2.3262 -;-;-;-;-;-;-;-;-;- 1314 NaN NaN 147117.5 NaN 9098 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11878 55.132 NaN 240540 35 0 22545 0.261 + 1500 AYVDKLEEL 9 74 540.2847307790429 1078.5549086248857 2 540.2845458984375 MULTI HCD FTMS 0 0 0 11874 125936.7890625 0.4314701835289664 5 -0.1410064697265625 4 Unmodified _AYVDKLEEL_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 53.40400417844725 0.026808823219830042 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WR]{I|L}EE{I|L} 8 3 + 52.559 0 0 4.8731 4.8731 89.474 0 0 0 3.971201052310164 30.723258213371437 3.971201052310164 23.7959116225103 0 1.6307196863200843 2 0 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WR]{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}M[KP]VC{I|L} 4.8731;2.6668 -;- 183 NaN NaN 119584.9 NaN 9099 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11879 55.136 NaN 322530 35 0 89737 0.262 + 26939 SYLERHGLINF 11 43 450.23816825986455 1347.6926753797936 3 450.2381896972656 MULTI HCD FTMS 0 0 0 11874 74599.359375 0.5782045506992703 1 -0.0361328125 5 Unmodified _SYLERHGLINF_ ENSG00000004487|ENST00000400181|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF;nc|ENSG00000004487|O60341|KDM1A 14.837902256254086 0.32779928292324945 1 GG{M(Oxidation (M))|F} 3 9 33.94 0 0 2.5184 0 0 1068.570923526081 0 1068.570923526081 0 18.455612550363796 0 0 0 0.9247425010840047 0 0 0 GG{M(Oxidation (M))|F} 2.5184 - 22 + NaN NaN 130930.3 NaN 9100 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11880 55.139 NaN 401400 35 0 28781 0.261 + 18721 MYSFVNDKF 9 83 583.7628994627244 1165.5112459922486 2 583.7628784179688 MULTI HCD FTMS 0 0 0 11874 83618.34375 0.5489379943027763 2 -0.0557098388671875 6 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 69.33821966488729 0.009302356455414924 1 [Y{M(Oxidation (M))|F}]S{M(Oxidation (M))|F}VNDK{M(Oxidation (M))|F} 9 0 [Y{M(Oxidation (M))|F}] + + 65.967 5.2288 1.6862 5.6599 5.6599 62.718 0 0 0 0 56.49751981665837 0 0 0 2.548455006504028 0 0.3807196863200844 0 + + [Y{M(Oxidation (M))|F}]S{M(Oxidation (M))|F}VNDK{M(Oxidation (M))|F} 5.6599 + + 984 + NaN NaN 142960.2 NaN 9101 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11881 55.142 NaN 303470 35 0 44987 0.261 + 32040 VYPTVKNQL 9 70 531.3028991085027 1060.5912452838054 2 531.3032836914062 MULTI HCD FTMS 0 0 0 11874 76600.265625 0.17632381232167704 8 -0.20641326904296875 7 Unmodified _VYPTVKNQL_ REV__ENST00000528393.1_1_11:79698696-79699011:+|nuORF 10.823927491677226 0.26684000660059787 1 {I|L}PYG 4 -1 42.652 0 0 4.0215 0 0 0 627.3467501275999 627.3467501275999 18.979400086720375 0 0 0 0 0 1.5228787452803376 0 0 {I|L}PYG 4.0215 - 95 + NaN NaN 139631.7 NaN 9102 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11882 55.146 NaN 202230 35 0 17833 0.261 + 18242 MPDVDLHL 8 58 478.23169742748837 954.4488419217768 2 478.2312316894531 MULTI HCD FTMS 0 0 0 11874 76209.7734375 0.10323425642430611 28 -0.7805824279785156 8 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 85.35673624503755 0.01682165142544485 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 62.911 0 0 6.5914 6.5914 84.915 0 0 0 1.703103093438969 1.703103093438969 1.703103093438969 1.703103093438969 0 2.305462187404089 0 1.524227503252014 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE 6.5914;6.4129;3.7114 +;+;- + 80 NaN NaN 112161.8 NaN 9103 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11883 55.149 NaN 279860 35 0 48979 0.261 + 6645 FPLTTESAM 9 69 506.736049836602 1011.457546740004 2 506.73663330078125 MULTI HCD FTMS 0 0 0 11874 89461.9765625 0.7250829631290953 -7 0.18640899658203125 9 Oxidation (M) _FPLTTESAM(Oxidation (M))_ ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF 46.020951573049366 0.037705236580089195 1 KESA{M(Oxidation (M))|F} 5 5 49.553 0 0 4.8991 0 0 431.19957167793126 0 431.19957167793126 0 36.32576888900239 0 0 0 1.4247425010840047 0 0.4247425010840047 0 KESA{M(Oxidation (M))|F} 4.8991 - 120 NaN NaN 127348 NaN 9104 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11884 55.152 NaN 411230 35 0 61210 0.261 + 10853 IVIKYKDYF 9 81 594.8366832006712 1187.6588134681424 2 595.3235473632812 MULTI HCD FTMS 0 0 0 11874 16336.578125 0.16693520812874726 4 -0.10484695434570312 10 Unmodified _IVIKYKDYF_ ENSG00000046774|ENST00000247452|MAGEC2 11.640296217721598 0.25978676193971967 1 {[QN]|[E{I|L}]|[KN]}[WH]H{I|L}{I|L}[Q{I|L}] 9 8 + 23.134 0 0 1.9478 1.9478 86.926 0 0 0 1.082268588648251 0.7378621416091882 0.7378621416091882 23.13363730737706 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}[WH]H{I|L}{I|L}[Q{I|L}] 1.9478 - 91 NaN NaN 161269.4 NaN 9105 2777 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11886 55.157 NaN 646310 35 0 78759 0.327 + 13917 KYQIINEEF 9 79 592.3032305433263 1182.5919081534526 2 592.303466796875 MULTI HCD FTMS 0 0 0 11885 322774 0.14028210143260728 8 -0.2130889892578125 1 Unmodified _KYQIINEEF_ ENSG00000163755|ENST00000296051|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3 117.76058876431921 0.001675465467887476 1 [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F} 9 0 + 82.616 0 0 6.986 6.986 89.742 0 0 0 3.65279269351241 64.53377376411949 3.65279269351241 9.208187539523749 0 2.4802046884880937 0 0 1.0189301784845295 + + [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F};[YK][AG]{I|L}{I|L}NEE{M(Oxidation (M))|F};[YK]Q{I|L}{I|L}GGEE{M(Oxidation (M))|F};[YK][AG]{I|L}{I|L}GGEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}NEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}GGEE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}E{M(Oxidation (M))|F}{I|L}KKE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}{M(Oxidation (M))|F}KKE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]EN{I|L}KKE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]EGG{I|L}KKE{M(Oxidation (M))|F} 6.986;6.2074;6.2074;5.4324;5.3677;4.5891;2.6523;2.6523;2.5703;1.7917 +;-;-;-;-;-;-;-;-;- + 560 NaN NaN 182324.9 NaN 9106 2778 11885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11887 55.162 NaN 618220 35 0 104450 0.264 -1 LSSMIKQKRK 10 87 412.24814357082744 1233.7226013126824 3 412.248291015625 MULTI HCD FTMS 0 0 0 11885 234030.125 0.3975801274598431 5 -0.12115478515625 2 Oxidation (M) _LSSM(Oxidation (M))IKQKRK_ ENST00000560515.1_1_15:59693458-59694001:-|nuORF 11.517880264261096 0.4033776509493788 1 {I|L}DW{I|L}KK{I|L} 7 -1 63.171 0 0 5.1204 0 0 319.1640797345719 0 319.1640797345719 0 50.07236234286685 0 0 0 2.2134679910804405 0 0.6747425010840047 0 {I|L}DW{I|L}KK{I|L} 5.1204 - 303 NaN NaN 179412 NaN 9107 2778 11885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11888 55.165 NaN 858960 35 0 72644 0.261 + 22054 QGLREEALL 9 90 514.7900186742852 1027.5654844153703 2 514.7908325195312 MULTI HCD FTMS 0 0 0 11885 241987.859375 0.4061819280677821 3 -0.06871414184570312 3 Unmodified _QGLREEALL_ ENST00000584106.1_1_17:37034352-37046744:+|nuORF;nc|ENSG00000002834|Q14847-3|LASP1 38.175570920033316 0.07371992880350783 1 {[QG]|[NA]}{I|L}TP{[SA]|[TG]}{I|L}E 9 4 38.029 0 0 3.7009 0 0 0 128.07191332982453 128.07191332982453 16.85850004969454 0 0 0 0 1.3921590589602533 1.3010299956639813 0 0.3807196863200844 {[QG]|[NA]}{I|L}TP{[SA]|[TG]}{I|L}E 3.7009 - 590 NaN NaN 212396.1 NaN 9108 2778 11885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11889 55.169 NaN 232970 35 0 28140 0.261 -1 FGCFCGFIL 9 65 560.7528351850025 1119.4911174368049 2 560.7529296875 MULTI HCD FTMS 0 0 0 11885 57818.2421875 0.579682304550344 3 -0.06871414184570312 4 2 Carbamidomethyl (C) _FGC(Carbamidomethyl (C))FC(Carbamidomethyl (C))GFIL_ BCL2L11-MERTK|1|fusion;BCL2L11-MERTK|2|fusion;BCL2L11-MERTK|3|fusion;ENSG00000153208|ENST00000295408|MERTK;MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant 9.347437153973935 0.2795965555214564 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 28.94 0 0 2.5851 0 0 728.2447376935562 0 728.2447376935562 0 1.2320406081154545 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.5851 + + 136 NaN NaN 128280.9 NaN 9109 2778 11885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11890 55.172 NaN 265850 35 0 18326 0.261 + 28450 TPLDEKSLAL 10 75 543.8063077134234 1085.5980624936467 2 543.8065185546875 MULTI HCD FTMS 0 0 0 11885 120104.984375 1 0 0 5 Unmodified _TPLDEKSLAL_ ENSG00000123562|ENST00000441076|MORF4L2;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 51.487983226225225 0.0723780666322865 1 TP{I|L}D 4 6 43.972 0 0 4.0505 0 0 0 656.3638399713499 656.3638399713499 12.066766343410006 0 0 0 0 1.274227503252014 0 0.3807196863200844 0 + TP{I|L}D 4.0505 + + 255 + NaN NaN 130236.4 NaN 9110 2778 11885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11892 55.177 NaN 933200 35 0 69984 0.327 -1 VMAPRTLLL 9 102 515.3096841063503 1028.6048152795006 2 515.3098754882812 MULTI HCD FTMS 0 0 0 11891 254127.625 0.6263792602515782 -4 0.107940673828125 1 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 31.26834338654808 0.10542797264966089 1 V{M(Oxidation (M))|F}AY 4 -1 35.851 0 0 3.4854 0 0 0 545.3742159479124 545.3742159479124 7.974381172870714 0 0 0 0 0.9247425010840047 1.0457574905606752 0 0 V{M(Oxidation (M))|F}AY 3.4854 - 970 + NaN NaN 223433.7 NaN 9111 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11893 55.181 NaN 402920 35 0 81118 0.261 + 5693 FPAGYMYPSM 10 64 598.2429929396999 1194.4714329461997 2 598.2437133789062 MULTI HCD FTMS 0 0 0 11891 189386.109375 0.6823605068402628 -17 0.4579315185546875 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 60.054 0 0 5.0277 0 0 64.00053655059499 0 64.00053655059499 0 48.8173657553704 0 0 0 0.9247425010840047 0 2.079689690656103 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.0277 - 233 + NaN NaN 151590.6 NaN 9112 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11894 55.185 NaN 618480 35 0 97926 0.261 + 26935 SYLENVDHF 9 85 562.255488604503 1122.4964242758058 2 562.257080078125 MULTI HCD FTMS 0 0 0 11891 294684.875 1 0 0 3 Unmodified _SYLENVDHF_ ENSG00000108509|ENST00000348066|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;nc|ENSG00000108509|O94983-5|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 143.90916361153978 1.5265063399744E-05 1 SY{I|L}ENVDH{M(Oxidation (M))|F} 9 0 + 123.16 0 0 10.972 10.972 95.767 0 0 0 99.99765838364502 14.09256854528806 14.09256854528806 12.09544243948811 0 3.004432191740108 2 1.066901560044258 0.28872548999643577 + + SY{I|L}ENVDH{M(Oxidation (M))|F};SY{I|L}EGGVDH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F};SY[PS][TA]VDH{M(Oxidation (M))|F};SY[PS]V[TA]DH{M(Oxidation (M))|F};[Y{I|L}]SENVDH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EGGVDH{M(Oxidation (M))|F};S[QA]MVNE[TP]{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}HHNVDH{M(Oxidation (M))|F};[Y{I|L}]SEGGVDH{M(Oxidation (M))|F} 10.972;9.8947;7.5578;7.2624;6.6829;6.6277;5.6693;5.6262;5.2885;4.7392 +;-;+;-;-;-;-;-;-;- + 814 + NaN NaN 173371 NaN 9113 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11895 55.188 NaN 408260 35 0 70539 0.262 + 27581 TAEALQPTL 9 62 472.25844416532004 942.5023353974401 2 472.2586669921875 MULTI HCD FTMS 0 0 0 11891 119384.953125 0.5762961981877297 -1 0.0195770263671875 4 Unmodified _TAEALQPTL_ ENSG00000172530|ENST00000682872|BANP;ENST00000466847.5_1_16:88068919-88110264:+|nuORF;ENST00000481948.1_1_16:88104968-88110264:+|nuORF;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP;nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP 76.82478488871298 0.006879825292024087 1 [TA]EA{I|L}QPT{I|L} 9 0 + 64.069 0 0 6.7977 6.7977 89.398 0 0 0 15.731136571674753 43.68948444925194 15.731136571674753 9.208187539523749 0 2.048455006504028 1.0969100130080565 0.805462187404089 0 + + [TA]EA{I|L}QPT{I|L};[TA]EA{I|L}[AG]PT{I|L};[TA]E{[TV]|[{I|L}S]}[{I|L}V]PN;[QT][{I|L}V][DG]PT{I|L};[QT]{NN|[MP]|[D{I|L}]|[EV]}[VG]PT{I|L} 6.7977;5.8207;1.9974;0.95068;0.95068 +;-;-;-;- + 148 NaN NaN 152489.2 NaN 9114 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11896 55.192 NaN 233170 35 0 16611 0.261 + 18597 MVSDEYEQL 9 71 557.2419426851561 1112.4693324371121 2 557.2418823242188 MULTI HCD FTMS 0 0 0 11891 84964.1171875 0.17027798535692312 9 -0.25597381591796875 5 Unmodified _MVSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 22.736283301280096 0.1639198954644489 1 YEQ{I|L} 4 5 42.933 0 0 3.8593 0 0 561.2101917951187 0 561.2101917951187 0 21.963950151760656 0 0 0 0.9247425010840047 0 0 0.3252574989159953 + YEQ{I|L} 3.8593 + + 146 NaN NaN 115330.3 NaN 9115 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11897 55.195 NaN 177870 35 0 28355 0.261 + 35775 YYMKDLPTSF 10 50 640.7968770121664 1279.5792010911327 2 640.7974243164062 MULTI HCD FTMS 0 0 0 11891 94649.15625 0.581232237528981 4 -0.1015777587890625 6 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 49.52724829834842 0.07950882623896251 1 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 10 0 + 54.683 0 0 4.2735 4.2735 90.076 0 0 0 29.99037159853401 12.04628427264403 12.04628427264403 54.68310920309804 0 2.4291746928241125 2 0.4247425010840047 0 + + YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 4.2735 + + 32 + NaN NaN 120473.9 NaN 9116 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11898 55.198 NaN 172660 35 0 26365 0.261 + 27312 SYQKVMALW 9 61 571.2893161582517 1140.5640793833034 2 571.2891845703125 MULTI HCD FTMS 0 0 0 11891 68309.375 0.3576059233112879 12 -0.3346290588378906 7 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 53.832793166522166 0.026208976789938845 1 {M(Oxidation (M))|F}A{I|L}W 4 5 50.433 0 0 4.4218 0 0 605.316698142775 0 605.316698142775 0 32.67342849135353 0 0 0 1.8494850021680094 0 0 0 + {M(Oxidation (M))|F}A{I|L}W 4.4218 + + 177 NaN NaN 109676.4 NaN 9117 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11899 55.202 NaN 69305 35 0 5556.5 0.262 + 3099 EAKVQSCF 8 43 456.2179697410121 NaN 0 455.8605041503906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _EAKVQSCF_ REV__CTNNA3|p.I781F|1|0.26|ENSG00000183230|chr10:65966671-65966671|T/A|missense_variant 4.3292370932331545 0.38822285293237185 1 Q 1 -1 5.4846 0 0 0.60242 0 0 429.2029964723277 350.1368807428344 779.3398772151621 0 0 0 0 0 0 0 0 0 Q 0.60242 + + 3 + NaN NaN 88946 NaN 9118 2779 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11901 55.206 NaN 1400300 35 0 159080 0.327 + 22304 QPFREAIAL 9 92 522.7953228393754 1043.5760927455508 2 522.7954711914062 MULTI HCD FTMS 0 0 0 11900 655844.5 0.2239937444479243 6 -0.16397476196289062 1 Unmodified _QPFREAIAL_ ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 36.12702656103203 0.08312389501731911 1 [{I|L}A][EP]WD{I|L}A 8 7 39.113 0 0 3.7479 0 0 0 145.09684877704402 145.09684877704402 13.005003753761144 0 0 0 0 0 1.2218487496163564 1.7051120522087029 0 [{I|L}A][EP]WD{I|L}A 3.7479 - 566 NaN NaN 290123.9 NaN 9119 2780 11900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11902 55.211 NaN 614980 35 0 144930 0.261 -1 MPFRGYAVL 9 81 535.2792981134158 1068.5440432936316 2 535.27880859375 MULTI HCD FTMS 0 0 0 11900 228190.75 0.6960188233141061 5 -0.12116622924804688 2 Oxidation (M) _M(Oxidation (M))PFRGYAVL_ ENSG00000169710|ENST00000306749|FASN 32.30548876998284 0.10066689432505688 1 C[YQ]{I|L}AE{I|L} 7 -1 43.134 0 0 4.0367 0 0 230.16304213691564 0 230.16304213691564 0 24.9858119277779 0 0 0 0.9247425010840047 0 0.3252574989159953 0.28872548999643577 C[YQ]{I|L}AE{I|L} 4.0367 - 572 NaN NaN 169702.8 NaN 9120 2780 11900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11903 55.214 NaN 231800 35 0 18423 0.261 + 9761 HYILHNSFF 9 62 589.2930832030781 1176.5716134729562 2 589.2933349609375 MULTI HCD FTMS 0 0 0 11900 86591.875 0.05774863880322389 41 -1.1402511596679688 3 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 66.45667989310934 0.010234776021261575 1 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 83.95 0 0 7.1352 7.1352 90.028 0 0 0 20.157942671832316 52.26789385964942 20.157942671832316 9.208187539523749 0 1.610924374808178 1.3010299956639813 0.9247425010840047 0 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}[HK][TP]T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HN[YV]H{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.1352;6.3525;5.02;4.2373;3.84;2.4073 +;-;-;-;-;- + 166 NaN NaN 121947.9 NaN 9121 2780 11900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11904 55.218 NaN 400770 35 0 63703 0.264 + 31675 VYKDSFELKF 10 58 425.8919683407322 1274.6540756223967 3 425.89202880859375 MULTI HCD FTMS 0 0 0 11900 122990.5859375 0.6398654927747869 -2 0.049114227294921875 4 Unmodified _VYKDSFELKF_ ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A 59.17704102725264 0.044414662705813346 1 VYK[WY]E{I|L}K 8 4 81.235 0 0 6.3731 0 0 0 162.0560244195922 162.0560244195922 73.76078152608656 0 0 0 0 1.1861818737241734 2 1.274227503252014 0 VYK[WY]E{I|L}K 6.3731 - 356 + NaN NaN 141612.3 NaN 9122 2780 11900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11905 55.221 NaN 95114 35 0 7558.7 0.261 + 26049 SPEQFDLI 8 55 474.7361802485396 947.4578075638792 2 474.7361755371094 MULTI HCD FTMS 0 0 0 11900 34175.00390625 0.9950786333593795 -1 0.029537200927734375 5 Unmodified _SPEQFDLI_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 9.38312468134398 0.524755689532147 1 T{I|L} 2 7 25.969 0 0 2.7409 0 0 715.3159717195846 0 715.3159717195846 0 10.779550148593485 0 0 0 0.5 0 0 0 T{I|L} 2.7409 - 20 NaN NaN 92220.6 NaN 9123 2780 11900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11907 55.226 NaN 1764500 35 0 106640 0.327 + 6013 FPDRIMNTF 9 115 578.7764311978499 1155.5383094624997 2 578.776611328125 MULTI HCD FTMS 0 0 0 11906 1089693 0.4083929277148869 -6 0.15707778930664062 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 166.76915356408847 5.584250141028017E-09 1 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 98.414 0 0 8.5167 8.5167 89.749 0 0 0 58.15134816636814 14.973024840566467 14.973024840566467 5.009876598107766 0 3.110924374808178 0 2.642159058960253 0.6549471895720984 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F};[DP]R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 8.5167;8.0832;8.0832;7.4174;7.2863;7.2863;6.5058;6.5058;5.8511;5.7905 +;+;-;-;-;-;-;-;-;- + 6655 + NaN NaN 357065.4 NaN 9124 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11908 55.23 NaN 1014000 35 0 247890 0.261 + -1 EMLDCLLEM 9 78 593.2452042705696 1184.4758556079391 2 593.2456665039062 MULTI HCD FTMS 0 0 0 11906 655302.0625 1 0 0 2 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 1 {I|L}V{I|L}DE 5 -1 83.192 0 0 7.0236 0 0 0 612.1467133129664 612.1467133129664 49.532548496285486 0 0 0 0 1.805462187404089 1.6989700043360187 1.0189301784845295 0 {I|L}V{I|L}DE 7.0236 - 136 + NaN NaN 253268.6 NaN 9125 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11909 55.234 NaN 760160 35 0 83058 0.261 + 1142 AYLEAYKEF 9 70 567.279471362912 1132.5443897926239 2 567.2794799804688 MULTI HCD FTMS 0 0 0 11906 365050.6875 0.7406206883696727 -2 0.049137115478515625 3 Unmodified _AYLEAYKEF_ ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 136.39213081522345 0.00021731600835925866 1 AY{I|L}EAYKE{M(Oxidation (M))|F} 9 0 + 137.14 0 0 12.109 12.109 97.226 0 0 0 94.3505334965512 14.973024840566467 14.973024840566467 18.755448883360003 0 3.305462187404089 2 1.6861818737241734 0.28872548999643577 + + AY{I|L}EAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYG{I|L}S{M(Oxidation (M))|F};AY{I|L}{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}KE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AEYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AEYG{I|L}S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}AYAYKE{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YAAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}THPRE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA[VS]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 12.109;10.453;9.9674;9.145;9.1435;8.6582;8.0449;7.9159;7.8629;7.5617 +;+;-;-;-;-;-;-;-;- + 2000 + NaN NaN 203729 NaN 9126 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11910 55.237 NaN 570850 35 0 51339 0.261 + 18144 MPDGQFKDISL 11 95 633.8053974265821 1265.596241919964 2 633.8056640625 MULTI HCD FTMS 0 0 0 11906 334301.71875 0.785350271056626 -2 0.049137115478515625 4 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 112.9460926246317 0.01903779587596767 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 107.59 0 0 8.5012 8.5012 91.406 0 0 0 4.981979378655865 92.85410557505381 4.981979378655865 9.128498242810991 0 2.5994850021680094 0 1.8539171939081172 0.7887254899964358 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}KS{I|L}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}KS{I|L}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}[{I|L}A][TA]S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}KS{I|L}VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}[{I|L}A]MK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}KS{I|L}VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}[{I|L}A]MK{I|L};{M(Oxidation (M))|F}V{I|L}S[DN]{M(Oxidation (M))|F}[QP]S{I|L} 8.5012;7.7799;6.73;6.0087;5.8333;5.4833;4.8383;4.762;4.117;2.4064 +;-;-;-;-;-;-;-;-;- + 841 NaN NaN 178822.1 NaN 9127 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11911 55.241 NaN 430530 35 0 74743 0.261 + -1 FATLMCKSF 9 70 552.7672645266557 NaN 0 552.7535400390625 PEAK HCD FTMS 0 0 0 11906 11977.138671875 0.6935848411272858 -1 0.01959991455078125 5 Carbamidomethyl (C) _FATLMC(Carbamidomethyl (C))KSF_ REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF 13.50788311687929 0.22978952576613207 1 YS 2 -1 18.711 0 0 1.6956 0 0 688.3458798446815 162.05605493717033 850.4019347818518 0 0 0 0 0 0 0 0.7742275032520141 0 YS 1.6956 - 90 + NaN NaN 150775.2 NaN 9128 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11912 55.244 NaN 211370 35 0 53579 0.261 + 19422 NPLHLDYVM 9 60 559.2707309608332 1116.5269089884664 2 559.2706298828125 MULTI HCD FTMS 0 0 0 11906 104898.734375 0.7081346066886913 -5 0.12102508544921875 6 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 56.17704186161178 0.022929533404884107 1 {I|L}DYV{M(Oxidation (M))|F} 5 4 54.196 0 0 4.854 0 0 461.23790175605626 0 461.23790175605626 0 47.2062251842808 0 0 0 1.774227503252014 0 0.3494850021680094 0 + {I|L}DYV{M(Oxidation (M))|F} 4.854 + + 111 NaN NaN 115064.2 NaN 9129 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11913 55.247 NaN 311010 35 0 43876 0.261 + 6646 FPLTTESAM 9 62 506.736049836602 1011.457546740004 2 506.7362060546875 MULTI HCD FTMS 0 0 0 11906 88457.9921875 0.7169457411099536 -3 0.06871414184570312 7 Oxidation (M) _FPLTTESAM(Oxidation (M))_ ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF 68.08070601005525 0.009709267492204555 1 TTESA{M(Oxidation (M))|F} 6 3 60.856 0 0 6.0167 0 0 357.2048512189469 0 357.2048512189469 0 48.29333002237205 0 0 0 2.474907363720609 0 0.4247425010840047 0 + TTESA{M(Oxidation (M))|F} 6.0167 + + 153 NaN NaN 128247 NaN 9130 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11914 55.251 NaN 154490 35 0 26194 0.261 + 25339 SDQFDLESI 9 54 527.2401436333465 1052.465734333493 2 527.2406616210938 MULTI HCD FTMS 0 0 0 11906 80703.7421875 1 0 0 8 Unmodified _SDQFDLESI_ REV__ENSG00000114744|ENST00000473414|COMMD2;REV__ENST00000463077.5_1_3:149459310-149470177:-|nuORF;REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF;REV__nc|ENSG00000114744|Q86X83-2|COMMD2 13.90604991867851 0.24021115267848145 1 YV{I|L} 3 -1 23.812 0 0 2.2625 0 0 659.2396107404312 0 659.2396107404312 0 6.822581265925436 0 0 0 0 0 0 0 YV{I|L} 2.2625 - 44 NaN NaN 100733.5 NaN 9131 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11915 55.254 NaN 109400 35 0 7725.9 0.261 -1 SAMDSNYQQS 10 45 573.7230486235858 1145.4315443139715 2 573.7233276367188 MULTI HCD FTMS 0 0 0 11906 8388.1923828125 0.07846281588980568 5 -0.14437484741210938 9 Oxidation (M) _SAM(Oxidation (M))DSNYQQS_ ENSG00000120729|ENST00000239926|MYOT;nc|ENSG00000120729|Q9UBF9|MYOT 1.4819007175156935 0.4674597685733628 1 C 1 -1 4.6041 0 0 0.40195 0 0 149.96795694691383 889.4143993035325 1039.3823562504463 0 0 0 0 0 0 0 0 0 C 0.40195 - 6 + NaN NaN 97029 NaN 9132 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11916 55.257 NaN 181610 35 0 31512 0.261 + 8974 HPDYSFGEL 9 57 532.73796200721 1063.4613710812198 2 532.7379760742188 MULTI HCD FTMS 0 0 0 11906 59360.8046875 0.3347360217595201 -7 0.1732177734375 10 Unmodified _HPDYSFGEL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}GE{I|L} 4 5 40.745 0 0 3.8314 0 0 599.2352162091812 0 599.2352162091812 0 31.564184743271753 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F}GE{I|L} 3.8314 + + 29 NaN NaN 107709.1 NaN 9133 2781 11906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11918 55.262 NaN 230620 35 0 20451 0.327 -1 LPIWDSESAM 10 56 582.7686333019518 NaN 0 582.7791137695312 PEAK HCD FTMS 0 0 0 11917 10076.6513671875 0.44207556210501925 -3 0.085296630859375 1 Oxidation (M) _LPIWDSESAM(Oxidation (M))_ ENST00000454741.5_1_22:28395954-28396164:+|nuORF 9.38312468134398 0.33215363477037435 1 ASVW 4 -1 22.652 0 0 1.9468 0 0 165.06041132569356 552.2306612604124 717.2910725861059 0 0 0 0 0 0.8494850021680094 0 0 0 ASVW 1.9468 - 28 + NaN NaN 139271.6 NaN 9134 2782 11917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11919 55.267 NaN 205910 35 0 23329 0.261 -1 FPSGETIVM 9 50 498.73881904418147 995.463085155163 2 498.7392272949219 MULTI HCD FTMS 0 0 0 11917 50684.75 0.7069028207584864 -5 0.1410064697265625 2 Oxidation (M) _FPSGETIVM(Oxidation (M))_ ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP 34.10243960390752 0.09241788333544565 1 T{I|L}V{M(Oxidation (M))|F} 4 -1 47.524 0 0 4.774 0 0 517.2172718732437 0 517.2172718732437 0 32.91956270212445 0 0 0 1.8494850021680094 0 0.4247425010840047 0 T{I|L}V{M(Oxidation (M))|F} 4.774 + + 110 NaN NaN 115658.9 NaN 9135 2782 11917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11920 55.27 NaN 92662 35 0 14116 0.261 -1 KYMYFTVVM 9 44 607.2850141724352 1212.5554754116704 2 607.2855224609375 MULTI HCD FTMS 0 0 0 11917 57254.24609375 0.26857552360463777 13 -0.36080169677734375 3 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 12.240655878213236 0.2545997876781172 1 TVV{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.4587 0 0 748.3257543186297 0 748.3257543186297 0 38.83925646871916 0 0 0 1 0 0 0 TVV{M(Oxidation (M))|F} 3.4587 + + 20 NaN NaN 90478.3 NaN 9136 2782 11917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11921 55.274 NaN 46397 35 0 5285.4 0.264 -1 0 37 453.2091622146326 452.2018857480326 1 453.2096252441406 MULTI HCD FTMS 0 0 0 11917 31440.791015625 0.009699583780052354 31 -0.8621864318847656 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87303.6 NaN 9137 2782 11917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11923 55.278 NaN 2139800 35 0 116200 0.327 + 2489 DSANDGFVRL 10 120 547.2670126868722 1092.5194724405444 2 547.2681884765625 MULTI HCD FTMS 0 0 0 11922 794788.125 0.15095867216682587 7 -0.20684051513671875 1 Unmodified _DSANDGFVRL_ ENSG00000169813|ENST00000682386|HNRNPF 179.28349886687624 4.545700307145465E-16 1 {[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}V{I|L}R 10 2 + 77.203 0 0 7.0665 7.0665 89.229 0 0 0 0.12279686003367374 10.514152423128238 0.12279686003367374 9.164539485499262 0 2.254432191740108 0 0.48965182871044377 0.850576203518622 {[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}V{I|L}R;{[DS]|[MA]|[CV]|TT}AGGDG{M(Oxidation (M))|F}V{I|L}R;{[DS]|[MA]|[CV]|TT}AND[R{M(Oxidation (M))|F}]GV{I|L};{[DS]|[MA]|[CV]|TT}AGGD[R{M(Oxidation (M))|F}]GV{I|L};[DN]ASD[R{M(Oxidation (M))|F}]GV{I|L};{[DS]|[MA]|[CV]|TT}{[WN]|[YH]}G{M(Oxidation (M))|F}V{I|L}R;[YQ][HM]{M(Oxidation (M))|F}V{I|L}R;[{I|L}P]AQ{[DA]|[EG]}D[HN]{I|L};[{I|L}P]AAG{[DA]|[EG]}D[HN]{I|L} 7.0665;6.2277;6.1041;5.001;3.8514;3.672;1.914;0.12329;0.085403 -;-;-;-;-;-;-;-;- 1818 + NaN NaN 401618.8 NaN 9138 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11924 55.283 NaN 423610 35 0 83052 0.261 + 26087 SPHLEEISL 9 61 512.7687494458941 1023.5229459585881 2 512.7693481445312 MULTI HCD FTMS 0 0 0 11922 236846.21875 0.7682974325204881 -2 0.052440643310546875 2 Unmodified _SPHLEEISL_ ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;nc|ENSG00000140853|Q86WI3-4|NLRC5 37.97399986684836 0.07464525285885698 1 [Y{I|L}]{[WT]|[RM]}E{I|L}S{I|L} 8 5 + 57.396 0 0 5.6077 5.6077 89.177 0 0 0 0.8927186071611715 41.251837901751 0.8927186071611715 13.26606256887672 0 1.4247425010840047 0 0.7742275032520141 0 [Y{I|L}]{[WT]|[RM]}E{I|L}S{I|L};[Y{I|L}]{[WT]|[RM]}ES{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}W[YT]{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P[{M(Oxidation (M))|F}T]E{I|L}S{I|L};{[QN]|[E{I|L}]|[KN]}[HD][TP]{I|L}S{I|L};{[QN]|[E{I|L}]|[KN]}W[YT]S{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[HD][{I|L}T]PS{I|L};[Y{I|L}]{[NV]|[RG]}[C(Carbamidomethyl (C))R]S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[TP][{M(Oxidation (M))|F}E]S{I|L};{[QN]|[E{I|L}]|[KN]}[HD][TP]S{I|L}{I|L} 5.6077;4.3116;4.3104;3.8689;3.4054;3.0142;2.4508;2.3587;2.3087;2.1093 -;-;-;-;-;-;-;-;-;- 291 NaN NaN 143345.9 NaN 9139 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11925 55.286 NaN 296060 35 0 38540 0.261 -1 EVMNLLMF 8 67 506.7454824915593 1011.4764120499186 2 506.7361145019531 MULTI HCD FTMS 0 0 0 11922 7869.93505859375 0.09215539966980181 -6 0.15728759765625 3 Oxidation (M) _EVMNLLM(Oxidation (M))F_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 13.50788311687929 0.4944073034352369 1 TTESA{M(Oxidation (M))|F} 6 -1 43.51 0 0 4.3016 0 0 357.2236787508936 0 357.2236787508936 0 28.236745793088204 0 0 0 1 0 0.5629529932484498 0 TTESA{M(Oxidation (M))|F} 4.3016 - 178 + NaN NaN 124217.2 NaN 9140 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11926 55.29 NaN 202860 35 0 18439 0.261 + 18243 MPDVDLHL 8 63 478.2313836346678 954.4482143361356 2 478.2313537597656 MULTI HCD FTMS 0 0 0 11922 113936.203125 0.09726850339579256 -29 0.7087554931640625 4 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 1 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 57.701 0 0 6.0455 6.0455 84.953 0 0 0 3.8784939400354546 3.8784939400354546 3.8784939400354546 3.8784939400354546 0 2.0356668758921828 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE 6.0455;5.6391;4.5079 +;+;- + 117 + NaN NaN 115544.4 NaN 9141 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11927 55.293 NaN 394520 35 0 27834 0.261 + 24645 RYLQTLTTI 9 86 554.821573921432 1107.628594909664 2 554.821533203125 MULTI HCD FTMS 0 0 0 11922 91350.4453125 0.04184394885512582 21 -0.60040283203125 5 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 24.990960013464015 0.14443998892849796 1 K{I|L}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}TT{I|L} 8 4 41.947 0 0 3.7871 0 0 184.15660288086434 0 184.15660288086434 0 5.355195294446048 0 0 0 1.579689690656103 0 0.6139829889124311 0 K{I|L}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}TT{I|L} 3.7871 - 356 + NaN NaN 143136.9 NaN 9142 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11928 55.296 NaN 157070 35 0 10315 0.261 + -1 YLGRSMATGSN 11 72 586.7745284295509 NaN 0 586.793212890625 PEAK HCD FTMS 0 0 0 11922 21284.232421875 0.3870905419850913 22 -0.6232948303222656 6 Oxidation (M) _YLGRSM(Oxidation (M))ATGSN_ REV__ENSG00000088970|ENST00000619189|KIZ;REV__KIZ|p.Q231Rfs*24|1|0.08|ENSG00000088970|chr20:21162154-21162154|T/-|frameshift_variant;REV__KIZ|p.S376Rfs*12|1|0.15|ENSG00000088970|chr20:21162934-21162935|-/AATTACTCATCAGT|frameshift_variant;REV__nc|ENSG00000088970|Q2M2Z5-2|KIZ;REV__nc|ENSG00000088970|Q2M2Z5-3|KIZ;REV__nc|ENSG00000088970|Q2M2Z5-4|KIZ;REV__nc|ENSG00000088970|Q2M2Z5-5|KIZ 10.799506525563784 0.3114850535502259 1 A 1 -1 6.9897 0 0 0.59663 0 0 276.10963612616735 821.3571030988338 1097.4667392250012 0 0 0 0 0 0 0 0 0 A 0.59663 + + 56 + NaN NaN 109319.4 NaN 9143 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11929 55.3 NaN 102340 35 0 16329 0.263 -1 0 52 467.10200092631936 NaN 0 467.10137939453125 PEAK HCD FTMS 0 0 0 11922 52310.2265625 0.6471329873560028 32 -0.9012260437011719 7 NaN NaN 1 QE 2 -1 7.9588 0 0 0.85377 0 0 131.85484239934516 540.2086275690061 672.0634699683512 0 0 0 0 0 0 0 0 0 QE 0.85377 - 8 + NaN NaN 94330.1 NaN 9144 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11930 55.303 NaN 143620 35 0 13968 0.261 -1 KIREMMDSFQF 11 56 483.2287378935141 1446.6643842807423 3 483.22857666015625 MULTI HCD FTMS 0 0 0 11922 31069.546875 0.6919573418752819 2 -0.04912567138671875 8 Oxidation (M) _KIREM(Oxidation (M))MDSFQF_ ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4|FRAS1 3.133959531975271 0.40517618462012517 1 DG{I|L}D[WQ]Y{M(Oxidation (M))|F} 8 -1 32.74 0 0 2.2631 0 0 404.2425709455094 0 404.2425709455094 0 32.740181612806936 0 0 0 1 0 0 0 DG{I|L}D[WQ]Y{M(Oxidation (M))|F} 2.2631 - 101 NaN NaN 102308.3 NaN 9145 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11931 55.306 NaN 59569 35 0 5167.9 0.261 -1 CNFFDFDTF 9 43 404.8269630082984 NaN 0 404.8266296386719 PEAK HCD FTMS 0 0 0 11922 5679.8603515625 0.3301715000274756 1 -0.03282928466796875 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))NFFDFDTF_ ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP 2.0860074813731053 0.28513834112692665 1 N 1 -1 6.9897 0 0 0.86545 0 0 343.399151991403 347.1715181940063 690.5706701854093 0 0 0 0 0 0 0 0 0 N 0.86545 + + 2 + NaN NaN 88792.8 NaN 9146 2783 11922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11933 55.311 NaN 251530 35 0 19087 0.327 -1 LPIWDSESAM 10 55 582.7686333019518 NaN 0 582.7810668945312 PEAK HCD FTMS 0 0 0 11932 16468.56640625 0.7224970365466588 -1 0.03282928466796875 1 Oxidation (M) _LPIWDSESAM(Oxidation (M))_ ENST00000454741.5_1_22:28395954-28396164:+|nuORF 13.90604991867851 0.3282826376286837 1 AGPV 4 -1 18.549 0 0 1.5942 0 0 165.05190175839726 671.2613013082675 836.3132030666648 0 0 0 0 0 0.28872548999643577 0 0 0 AGPV 1.5942 - 38 + NaN NaN 119348.9 NaN 9147 2784 11932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11934 55.316 NaN 156190 35 0 29806 0.263 + 26940 SYLERHGLINF 11 46 450.23816825986455 1347.6926753797936 3 450.2384338378906 MULTI HCD FTMS 0 0 0 11932 35648.28125 0.27630261996948247 8 -0.2296905517578125 2 Unmodified _SYLERHGLINF_ ENSG00000004487|ENST00000400181|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF;nc|ENSG00000004487|O60341|KDM1A 6.234356020891411 0.3915788988406848 1 G{M(Oxidation (M))|F} 2 9 22.959 0 0 1.7036 0 0 1125.5924689362373 0 1125.5924689362373 0 9.859856381998782 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 1.7036 - 27 + NaN NaN 106447.4 NaN 9148 2784 11932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11935 55.319 NaN 294490 35 0 28474 0.261 + 32834 WVFGILTEN 9 66 539.7837681917873 NaN 0 539.7987670898438 PEAK HCD FTMS 0 0 0 11932 6171.94287109375 0.36860361654494134 -2 0.04911041259765625 3 Unmodified _WVFGILTEN_ nc|ENSG00000021461|Q9HB55-6|CYP3A43 6.723162845929126 0.26266733336404485 1 ENT{I|L}{I|L} 5 7 23.5 0 0 2.1809 0 0 131.06550547117826 373.1617830865844 504.2272885577627 0 0 0 0 0 0 0 0 0.3807196863200844 ENT{I|L}{I|L} 2.1809 - 47 + NaN NaN 131629.5 NaN 9149 2784 11932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11936 55.323 NaN 82279 35 0 6939 0.261 + 21941 QEDSWKLL 8 55 509.76355903203415 NaN 0 509.73089599609375 PEAK HCD FTMS 0 0 0 11932 4481.4384765625 0.28208179757621965 1 -0.01629638671875 4 Unmodified _QEDSWKLL_ REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF 8.745405648335112 0.38822285293237185 1 S 1 -1 7.7866 0 0 0.76526 0 0 372.13013212481206 555.3248935645416 927.4550256893538 0 0 0 0 0 0.3807196863200844 0 0 0 S 0.76526 + + 9 + NaN NaN 105559.3 NaN 9150 2784 11932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11938 55.328 NaN 1390500 35 0 222030 0.327 + 28391 TPFHEIMSL 9 106 545.7655293873025 1089.516505841405 2 546.2562255859375 MULTI HCD FTMS 0 0 0 11937 118600.5703125 0.41891689553078354 -9 0.22259140014648438 1 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 49.93300154707207 0.03166451819912738 1 [YT]TM{[NV]|[RG]}YAK 9 8 + 45.794 0 0 4.2031 4.2031 85.968 0 0 0 3.3499392549709057 20.739527872919133 3.3499392549709057 9.955678082598915 0 0.4247425010840047 0.8860566476931632 1.0044321917401078 0 [YT]TM{[NV]|[RG]}YAK;[YT]TM[KG]D{M(Oxidation (M))|F}K;[EP][PG]{[NV]|[RG]}MTV{M(Oxidation (M))|F};[YT]TM{[NV]|[RG]}[KA]Y;[YT]TM[KG]NY{I|L};[EP][PG]{[NV]|[RG]}M{M(Oxidation (M))|F}S{I|L};[YT]T[{M(Oxidation (M))|F}V]{[QG]|[NA]}{M(Oxidation (M))|F}K;[YT]TM[KG]N{I|L}Y;{[MS]|[{M(Oxidation (M))|F}A]}[QT][YV]YAK;{[YD]|[{M(Oxidation (M))|F}M]}[KG][{M(Oxidation (M))|F}V]YAK 4.2031;3.2894;2.8894;2.3844;2.2456;2.2331;1.8447;1.8318;1.8106;1.7278 -;-;-;-;-;-;-;-;-;- 3038 NaN NaN 286371.8 NaN 9151 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11939 55.332 NaN 818750 35 0 99247 0.261 -1 VMAPRTLLL 9 89 515.3096841063503 1028.6048152795006 2 515.3099975585938 MULTI HCD FTMS 0 0 0 11937 397018.6875 0.978580238107929 2 -0.06572341918945312 2 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 34.93206674587334 0.08860942999206235 1 [{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}{I|L} 9 -1 + 59.359 0 0 5.7708 5.7708 92.686 0 0 0 17.147642715192504 32.19151233673003 17.147642715192504 59.35850004969453 0 1.3494850021680094 1 0 0 [{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}{I|L} 5.7708 + + 411 NaN NaN 204968.2 NaN 9152 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11940 55.336 NaN 484810 35 0 98332 0.261 + 5694 FPAGYMYPSM 10 65 598.2429929396999 1194.4714329461997 2 598.2437744140625 MULTI HCD FTMS 0 0 0 11937 222967.59375 0.8033550125840839 -11 0.2747840881347656 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.13359017698441 0.016242133362018647 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 54.949 0 0 4.6002 0 0 535.2439477899384 0 535.2439477899384 0 41.76091259055681 0 0 0 1.8494850021680094 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.6002 + + 285 NaN NaN 155938.1 NaN 9153 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11941 55.342 NaN 405910 35 0 35219 0.261 + 3350 EENTNILKF 9 78 554.287451339505 1106.5603497458098 2 554.2871704101562 MULTI HCD FTMS 0 0 0 11937 150542.828125 0.8385560781501312 -2 0.04912567138671875 4 Unmodified _EENTNILKF_ ENSG00000138594|ENST00000308580|TMOD3 70.33199760932243 0.0089807860198535 1 EENTN{I|L}{I|L}K{M(Oxidation (M))|F} 9 0 + 54.601 0 0 4.9343 4.9343 86.136 0 0 0 29.607952948012652 11.007564629426412 11.007564629426412 9.208187539523749 0 1.5484550065040281 0 0 0.3252574989159953 + + EENTN{I|L}{I|L}K{M(Oxidation (M))|F};EEGGTN{I|L}{I|L}K{M(Oxidation (M))|F};EENTGG{I|L}{I|L}K{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}{[QN]|[E{I|L}]|[KN]}N{I|L}{I|L}K{M(Oxidation (M))|F};[K{I|L}][DN]DD{I|L}K{M(Oxidation (M))|F};EEGGTGG{I|L}{I|L}K{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}{[QN]|[E{I|L}]|[KN]}GG{I|L}{I|L}K{M(Oxidation (M))|F};[RH][VS][C(Carbamidomethyl (C))R][RH] 4.9343;4.1021;4.1021;4.0548;3.5377;3.2739;3.2227;0.6988 +;-;-;-;-;-;-;- + 365 + NaN NaN 153794.9 NaN 9154 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11942 55.346 NaN 293150 35 0 41074 0.261 + 26936 SYLENVDHF 9 60 562.255488604503 1122.4964242758058 2 562.2573852539062 MULTI HCD FTMS 0 0 0 11937 104733.9296875 0.35540992623900364 6 -0.18392562866210938 5 Unmodified _SYLENVDHF_ ENSG00000108509|ENST00000348066|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;nc|ENSG00000108509|O94983-5|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 96.93554129104106 0.004344229100022454 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F} 9 0 + 89.95 0 0 8.0134 8.0134 94.682 0 0 0 5.6424927368725974 79.76046779720966 5.6424927368725974 21.70818753952375 0 2.8494850021680094 0 0.6382104921644451 1.25 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EGGVDH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[TA][YQ]DH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}MRDD[TP]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}M{[ES]|[DT]|[{I|L}C]}[KC]H{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}M{[ES]|[DT]|[{I|L}C]}V[PS][MT] 8.0134;6.0795;3.3828;2.0221;1.9512;0.64222 +;-;-;-;-;- + 298 NaN NaN 140788.7 NaN 9155 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11943 55.349 NaN 322580 35 0 73652 0.261 + 21871 QAVVEEQVL 9 69 507.7767203133139 1013.5388876934278 2 507.77685546875 MULTI HCD FTMS 0 0 0 11937 116463.1640625 0.8553487566667386 1 -0.04280853271484375 6 Unmodified _QAVVEEQVL_ ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2 29.43715596616401 0.11383414875064776 1 EQV{I|L} 4 5 43.677 0 0 4.3094 0 0 526.2748890607437 0 526.2748890607437 0 26.663617425480894 0 0 0 1.1861818737241734 0 0 0.28872548999643577 + EQV{I|L} 4.3094 + + 249 NaN NaN 136434 NaN 9156 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11944 55.352 NaN 223460 35 0 34992 0.261 + 192 AETLAQPLT 9 47 472.25844416532004 942.5023353974401 2 472.25848388671875 MULTI HCD FTMS 0 0 0 11937 115388.09375 0.5570025200297145 5 -0.15771484375 7 Unmodified _AETLAQPLT_ REV__ENSG00000179588|ENST00000319555|ZFPM1 39.94969957227396 0.06557568441294001 1 PQ[KQ]PN 6 -1 29.385 0 0 3.1178 0 0 232.1421833722672 0 232.1421833722672 0 16.938200260161125 0 0 0 1 0 0 0 PQ[KQ]PN 3.1178 - 74 NaN NaN 117715.4 NaN 9157 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11945 55.356 NaN 136340 35 0 19380 0.261 -1 YYMKDLPTSF 10 46 640.7968770121664 1279.5792010911327 2 640.7971801757812 MULTI HCD FTMS 0 0 0 11937 51375.0234375 0.31548955118849215 10 -0.2953948974609375 8 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 30.7034409873982 0.22608124881558994 1 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 10 -1 + 57.937 0 0 4.5278 4.5278 90.544 0 0 0 19.06295947543775 50.94720941673181 19.06295947543775 57.936909460092 0 1.7302046884880937 2 0 0 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 4.5278 + + 33 NaN NaN 105901.4 NaN 9158 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11946 55.359 NaN 546660 35 0 47309 0.261 + 22848 QYMERLQLL 9 85 605.3181977852719 1208.6218426373437 2 605.3192138671875 MULTI HCD FTMS 0 0 0 11937 71675.3828125 0.061541623659848145 -6 0.15070343017578125 9 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 76.82478488871298 0.006879825292024087 1 [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L} 9 0 + 57.321 0 0 4.7427 4.7427 85.814 0 0 0 18.19099450863135 30.845078002212887 18.19099450863135 9.208187539523749 0 1.9731975075880328 0 0.3252574989159953 2.4247425010840047 + + [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L};[YQ]{M(Oxidation (M))|F}ER{I|L}[AG]{I|L}{I|L} 4.7427;3.9808 +;- + 262 NaN NaN 159798.1 NaN 9159 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11947 55.362 NaN 124490 35 0 21109 0.261 + 24948 RYTALQAFKF 10 39 622.8429456634896 1243.671338393779 2 623.3448486328125 MULTI HCD FTMS 0 0 0 11937 42322.75390625 0.793763273650184 -2 0.04912567138671875 10 Unmodified _RYTALQAFKF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 7.101721422024254 0.4377131641736035 1 A{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4 6 25.445 0 0 2.046 0 0 732.3914662091812 0 732.3914662091812 0 20.84121882396211 0 0 0 0.9247425010840047 0 0 0 + A{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.046 + + 12 NaN NaN 98571.2 NaN 9160 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11948 55.366 NaN 122480 35 0 15454 0.261 -1 SYQKVMALW 9 51 571.2893161582517 1140.5640793833034 2 571.2890014648438 MULTI HCD FTMS 0 0 0 11937 51780.30078125 0.2710746844077421 18 -0.5284309387207031 11 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 22.736283301280096 0.1639198954644489 1 A{I|L}W 3 -1 35.005 0 0 3.0691 0 0 752.3521595685562 0 752.3521595685562 0 33.01538440272459 0 0 0 0.8807196863200843 0 0 0 A{I|L}W 3.0691 + + 32 NaN NaN 108164.1 NaN 9161 2785 11937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11950 55.37 NaN 1459300 35 0 172700 0.327 -1 TPFHEIMSL 9 111 545.7655293873025 1089.516505841405 2 546.75732421875 MULTI HCD FTMS 0 0 0 11949 46584.0859375 0.5931488633033468 -7 0.193511962890625 1 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 25.399314129420986 0.14091189997036632 1 SYD[KT]TV{M(Oxidation (M))|F} 8 -1 37.705 0 0 3.4607 0 0 130.11331923602876 0 130.11331923602876 0 4.220201654764736 0 0 0 0.28872548999643577 0 1.2658715643802765 0 SYD[KT]TV{M(Oxidation (M))|F} 3.4607 - 2535 + NaN NaN 322299.9 NaN 9162 2786 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11951 55.375 NaN 442320 35 0 44037 0.261 + 32579 WKELREAL 8 79 522.7953228393754 1043.5760927455508 2 522.7957153320312 MULTI HCD FTMS 0 0 0 11949 184124.59375 0.06288496312619131 12 -0.33795166015625 2 Unmodified _WKELREAL_ REV__ENSG00000104365|ENST00000520810|IKBKB;REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF;REV__ENST00000517917.5_1_8:42128977-42177019:+|nuORF;REV__ENST00000518647.5_1_8:42129618-42174557:+|nuORF;REV__ENST00000520201.5_1_8:42129679-42177019:+|nuORF;REV__nc|ENSG00000104365|O14920-2|IKBKB;REV__nc|ENSG00000104365|O14920-4|IKBKB 36.04419817259434 0.28174663821216267 1 {I|L}A{I|L} 3 -1 13.684 0 0 1.3113 0 0 728.3597974348071 0 728.3597974348071 0 2.046284272644032 0 0 0 0.6237125054200234 0 0 0 {I|L}A{I|L} 1.3113 - 56 + NaN NaN 152099.6 NaN 9163 2786 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11952 55.378 NaN 175150 35 0 27675 0.262 + 31676 VYKDSFELKF 10 48 425.8919683407322 1274.6540756223967 3 425.89227294921875 MULTI HCD FTMS 0 0 0 11949 67384.3671875 0.35057098872313325 4 -0.11490631103515625 3 Unmodified _VYKDSFELKF_ ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A 29.43715596616401 0.2370699256569943 1 VY 2 8 45.217 0 0 3.5474 0 0 0 1009.4995310781243 1009.4995310781243 25.21144069483583 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.5474 + + 17 + NaN NaN 111291.3 NaN 9164 2786 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11953 55.382 NaN 786200 35 0 80544 0.261 + -1 DEAGNQITNTM 11 81 605.2577205775112 1208.5008882218224 2 605.2583618164062 MULTI HCD FTMS 0 0 0 11949 47602.90234375 0.6286344582681211 1 -0.022914886474609375 4 Oxidation (M) _DEAGNQITNTM(Oxidation (M))_ REV__ENSG00000021776|ENST00000156471|AQR;REV__ENST00000543879.6_1_15:35166876-35196659:-|nuORF 20.41453444215458 0.279209903849948 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[TV]|[{I|L}S]}{I|L}{[{M(Oxidation (M))|F}C]|[YS]}Q{I|L} 9 -1 33.086 0 0 2.7378 0 0 0 127.95062031500483 127.95062031500483 6.78904819593134 0 0 0 0 0 1.6989700043360187 0.6139829889124311 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[TV]|[{I|L}S]}{I|L}{[{M(Oxidation (M))|F}C]|[YS]}Q{I|L} 2.7378 - 385 NaN NaN 204771.8 NaN 9165 2786 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11954 55.385 NaN 394690 35 0 23309 0.261 + 4232 EVFDKTYQF 9 87 588.7814768547537 1175.5484007763073 2 589.294189453125 MULTI HCD FTMS 0 0 0 11949 50158.06640625 0.7346160156968713 -1 0.04280853271484375 5 Unmodified _EVFDKTYQF_ ENSG00000124541|ENST00000244496|RRP36;nc|ENSG00000124541|Q96EU6-2|RRP36 61.60191391372663 0.015340508911304802 1 QYTKD{M(Oxidation (M))|F}P{I|L} 8 8 45.303 0 0 3.8538 0 0 165.0790730207047 0 165.0790730207047 0 15.854706403678875 0 0 0 1 0 0 0.6505149978319906 QYTKD{M(Oxidation (M))|F}P{I|L} 3.8538 - 1604 NaN NaN 141979.2 NaN 9166 2786 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11955 55.388 NaN 408180 35 0 39437 0.261 -1 NYIVCELQQ 9 89 583.7812068275641 NaN 0 583.7628784179688 PEAK HCD FTMS 0 0 0 11949 7539.38818359375 0.33351466329779567 -3 0.0919342041015625 6 Carbamidomethyl (C) _NYIVC(Carbamidomethyl (C))ELQQ_ DDX10|p.V677*|1|0.3|ENSG00000178105|chr11:108838502-108838502|A/-|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10 16.942295170755138 0.2079222001251384 1 {I|L}DKV 4 -1 23.928 0 0 2.0529 0 0 276.0084452939969 431.24042688541255 707.2488721794094 0 0 0 0 0 0 0 0.3494850021680094 0 {I|L}DKV 2.0529 - 260 + NaN NaN 154657.1 NaN 9167 2786 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11957 55.393 NaN 3696000 35 0 276670 0.327 + 34280 YPDRIMNTF 9 118 578.7764311978499 1155.5383094624997 2 578.7767333984375 MULTI HCD FTMS 0 0 0 11956 2668246.5 1 0 0 1 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 179.28349886687624 1.1259799814826369E-12 1 YPDR{I|L}MNT{M(Oxidation (M))|F} 9 0 + 114.7 0 0 9.9265 9.9265 95.412 0 0 0 54.5136047118883 16.478174818886373 16.478174818886373 12.460762528683702 0 3.055462187404089 1.3979400086720375 2.3525684359364405 0.9634679910804405 + + YPDR{I|L}MNT{M(Oxidation (M))|F};YPDR{I|L}MGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F};YPE[RV]MNT{M(Oxidation (M))|F};YPDR{I|L}M[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRP{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPE[RV]MGGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PTW{M(Oxidation (M))|F}PNT{M(Oxidation (M))|F};[DP]YR{I|L}MNT{M(Oxidation (M))|F} 9.9265;8.8481;7.9377;7.5527;7.3044;7.1408;7.0072;6.4744;6.2488;6.2339 +;-;+;-;-;-;-;-;-;- + 16672 + NaN NaN 649145.4 NaN 9168 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11958 55.398 NaN 977730 35 0 212950 0.261 + -1 EMLDCLLEM 9 88 593.2452042705696 1184.4758556079391 2 593.2455444335938 MULTI HCD FTMS 0 0 0 11956 476103.875 0.726541090354038 6 -0.17054367065429688 2 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 1 {I|L}V{I|L}DE 5 -1 80.349 0 0 6.7835 0 0 0 612.1467617670156 612.1467617670156 47.315534464597704 0 0 0 0 1.805462187404089 1.6989700043360187 1.0356668758921828 0 {I|L}V{I|L}DE 6.7835 - 163 + NaN NaN 253855.2 NaN 9169 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11959 55.401 NaN 720970 35 0 165420 0.262 + 21064 PLWLSDHL 8 78 490.7635885380225 979.512624142845 2 490.7742919921875 MULTI HCD FTMS 0 0 0 11956 63013.57421875 0.30033789298775704 4 -0.11820220947265625 3 Unmodified _PLWLSDHL_ ENST00000323798.7_1_19:49490451-49490544:-|nuORF 20.871210003555333 0.44023077629866025 1 {I|L}PSS[{I|L}V]D 7 6 71.458 0 0 7.2953 0 0 0 265.1306551568969 265.1306551568969 44.011007396375135 0 0 0 0 0.4247425010840047 1.6989700043360187 1.5484550065040281 0 {I|L}PSS[{I|L}V]D 7.2953 - 398 + NaN NaN 203858.1 NaN 9170 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11960 55.405 NaN 426030 35 0 39403 0.261 + 18145 MPDGQFKDISL 11 68 633.8053974265821 1265.596241919964 2 633.8054809570312 MULTI HCD FTMS 0 0 0 11956 302229.09375 0.7100044282909058 4 -0.11820220947265625 4 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 70.49555756994154 0.01484552126421319 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 76.533 0 0 6.0472 6.0472 90.304 0 0 0 4.981979378655865 71.04866696787414 4.981979378655865 15.095821700600133 0 2.1747425010840047 0 1.535666875892183 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KDS{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KG]{M(Oxidation (M))|F}QD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KG]{M(Oxidation (M))|F}QDS{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}DQ{M(Oxidation (M))|F}YYS{I|L} 6.0472;4.8544;4.5788;4.1076;3.3861;2.2296 +;-;-;-;-;- + 147 NaN NaN 160448.4 NaN 9171 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11961 55.408 NaN 293700 35 0 26951 0.261 + 1143 AYLEAYKEF 9 65 567.279471362912 1132.5443897926239 2 567.2794189453125 MULTI HCD FTMS 0 0 0 11956 164918.9375 0.3345901848669851 4 -0.11820220947265625 5 Unmodified _AYLEAYKEF_ ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 80.6760300276096 0.005633624786464751 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F} 9 0 + 105.9 0 0 9.3502 9.3502 95.837 0 0 0 18.697114610913488 83.84434091480394 18.697114610913488 16.46591250700361 0 3.3494850021680094 1.6989700043360187 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYG{[TV]|[{I|L}S]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TH[RP]E{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}THA[MN]VN;[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}AYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YQ]{[TV]|[{I|L}S]}{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}V]AYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TH[C(Carbamidomethyl (C))R]VN;[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}AYG{[TV]|[{I|L}S]}{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}V]AYG{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 9.3502;7.8964;6.5306;5.931;5.8431;5.3126;5.3115;4.9128;4.3892;3.8576 +;-;-;-;-;-;-;-;-;- + 467 NaN NaN 147315.8 NaN 9172 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11962 55.411 NaN 198210 35 0 49711 0.261 + 19423 NPLHLDYVM 9 50 559.2707309608332 1116.5269089884664 2 559.2706909179688 MULTI HCD FTMS 0 0 0 11956 118398.6640625 0.7992679025910786 1 -0.039546966552734375 6 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 49.93300154707207 0.03166451819912738 1 N{I|L}PH{NN|[MP]|[D{I|L}]|[EV]}YV{M(Oxidation (M))|F} 9 2 + 48.306 0 0 4.3264 4.3264 89.927 0 0 0 31.3161404875364 7.107952948012652 7.107952948012652 48.30584053089659 0 1.8182503180159344 0 0 0 N{I|L}PH{NN|[MP]|[D{I|L}]|[EV]}YV{M(Oxidation (M))|F} 4.3264 - 70 + NaN NaN 119572 NaN 9173 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11963 55.415 NaN 692210 35 0 62437 0.261 + 16347 LRRYVRPFFLL 11 61 493.9691416665467 1478.8855955998401 3 494.3036804199219 MULTI HCD FTMS 0 0 0 11956 118147.6875 0.5876915323849896 -2 0.06572341918945312 7 Unmodified _LRRYVRPFFLL_ REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF 4.11662792887243 0.40086653484894175 1 {I|L}P 2 -1 37.251 0 0 2.5188 0 0 0 1265.7266618149304 1265.7266618149304 23.02887198244136 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 {I|L}P 2.5188 - 42 + NaN NaN 189961.6 NaN 9174 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11964 55.418 NaN 311450 35 0 69311 0.261 + 8975 HPDYSFGEL 9 53 532.73796200721 1063.4613710812198 2 532.7381591796875 MULTI HCD FTMS 0 0 0 11956 173836.46875 0.9802651478939849 -1 0.022914886474609375 8 Unmodified _HPDYSFGEL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1 52.268347100219714 0.028397529699942435 1 S{M(Oxidation (M))|F}GE{I|L} 5 4 51.696 0 0 4.8611 0 0 512.202440330275 0 512.202440330275 0 36.2113751626007 0 0 0 1.25 0 0.4247425010840047 0 + S{M(Oxidation (M))|F}GE{I|L} 4.8611 + + 174 NaN NaN 146809.9 NaN 9175 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11965 55.421 NaN 1555200 35 0 150170 0.261 + 19983 NYIDKVRFL 9 110 584.329258802008 1166.6439646708159 2 584.329833984375 MULTI HCD FTMS 0 0 0 11956 273933.125 0.06415839586400533 -5 0.13113021850585938 9 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 128.93241758739586 0.0006697181619526092 1 NY{I|L}DKVR 7 2 99.275 0 0 8.5095 0 0 0 275.1400545709594 275.1400545709594 70.41707954304499 0 0 0 0 2.298455006504028 2 0.6694451763165201 0.2614393726401688 + NY{I|L}DKVR 8.5095 + + 2141 + NaN NaN 325702.2 NaN 9176 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11966 55.425 NaN 105720 35 0 9286.6 0.264 + 1635 CAFCFQMICGS 11 53 403.8237257688966 1208.44934790689 3 404.1581726074219 MULTI HCD FTMS 0 0 0 11956 25143.8203125 0.8452616603315116 1 -0.039546966552734375 10 Unmodified _CAFCFQMICGS_ REV__ENSG00000279761|ENST00000623930|OR5D13 1.4551175022131473 0.41253901545122046 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.1568 0 0 1043.370457991654 0 1043.370457991654 0 13.979400086720375 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1568 + + 3 + NaN NaN 94334.1 NaN 9177 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11967 55.428 NaN 167350 35 0 10146 0.261 + 7596 FYHKYFNYL 9 43 647.8164508336723 1293.6183487341445 2 647.8168334960938 MULTI HCD FTMS 0 0 0 11956 17031.361328125 0.021491475057945766 74 -2.0275421142578125 11 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 4.5288652416199255 0.31668488241058723 1 MH[YE] 4 7 11.198 0 0 0.86563 0 0 715.366991111525 0 715.366991111525 0 11.197887582883936 0 0 0 0 0 0 0 MH[YE] 0.86563 - 3 NaN NaN 108620.9 NaN 9178 2787 11956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11969 55.433 NaN 915330 35 0 170220 0.327 + 16618 LVVHVEPAL 9 77 488.79497667222347 975.575400411247 2 488.7950439453125 MULTI HCD FTMS 0 0 0 11968 489837.40625 0.9081750954132132 -2 0.06246185302734375 1 Unmodified _LVVHVEPAL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 97.07464715276575 0.004340583992084827 1 {I|L}VVHVEPA{I|L} 9 0 + 70.103 0 0 7.1858 7.1858 85.373 0 0 0 16.848579354166745 0.37040453528037176 0.37040453528037176 0.37040453528037176 0 2.5682503180159344 1.5228787452803376 1.110924374808178 0 + + {I|L}VVHVEPA{I|L};[{I|L}V]VHVEPA{I|L};[{I|L}V]SE[R{M(Oxidation (M))|F}]{I|L}{I|L};{I|L}VVHVE{I|L}[PA];[{I|L}V]VHD{I|L}PA{I|L};[{I|L}V][HD]V{I|L}PA{I|L};{I|L}V[H{I|L}][DV]PA{I|L};{NN|[MP]|[D{I|L}]|[EV]}HVV{I|L}PA{I|L};[VS]{I|L}E[R{M(Oxidation (M))|F}]{I|L}{I|L};[{I|L}V]VHVE{I|L}[PA] 7.1858;7.1478;6.3182;6.2627;5.8913;5.4153;4.7481;4.5902;4.5506;4.4448 +;+;-;-;-;-;-;-;-;- + 736 + NaN NaN 223000 NaN 9179 2788 11968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11970 55.437 NaN 465510 35 0 104400 0.261 -1 KCVGTATWF 9 68 535.2600608153505 NaN 0 535.2791137695312 PEAK HCD FTMS 0 0 0 11968 6763.67626953125 0.3822779723141733 1 -0.019596099853515625 2 Carbamidomethyl (C) _KC(Carbamidomethyl (C))VGTATWF_ ENST00000361256.9_1_9:131584630-131584687:-|nuORF 7.289230182591677 0.2599242500475609 1 VA 2 -1 8.5835 0 0 0.80332 0 0 131.05619378518435 764.31827981357 895.3744735987543 0 0 0 0 0 0 0 0 0 VA 0.80332 - 52 + NaN NaN 152610.1 NaN 9180 2788 11968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11971 55.441 NaN 194380 35 0 34265 0.261 + 26088 SPHLEEISL 9 60 512.7687494458941 1023.5229459585881 2 512.7693481445312 MULTI HCD FTMS 0 0 0 11968 101128.1171875 0.3280460764830652 3 -0.07865524291992188 3 Unmodified _SPHLEEISL_ ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;nc|ENSG00000140853|Q86WI3-4|NLRC5 30.636539890814138 0.10832830463492794 1 E{I|L}S{I|L} 4 5 49.24 0 0 4.8109 0 0 563.2701893537125 0 563.2701893537125 0 38.2711470149615 0 0 0 1.305462187404089 0 0.4247425010840047 0 + E{I|L}S{I|L} 4.8109 + + 176 NaN NaN 129881.4 NaN 9181 2788 11968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11972 55.444 NaN 276150 35 0 40036 0.261 -1 MPVMEQSVL 9 67 525.2538608919263 1048.4931688506524 2 525.2542114257812 MULTI HCD FTMS 0 0 0 11968 86808.9296875 0.5208031741428025 -7 0.20683670043945312 4 Oxidation (M) _M(Oxidation (M))PVMEQSVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 16.149105407346934 0.22083165093524068 1 SV{I|L} 3 -1 33.927 0 0 3.2358 0 0 731.2964769787874 0 731.2964769787874 0 18.44212497064703 0 0 0 0.5 0 0.75 0 SV{I|L} 3.2358 + + 68 NaN NaN 131177.3 NaN 9182 2788 11968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11973 55.448 NaN 896080 35 0 161840 0.261 + 11318 IYLTTPYSW 9 85 572.2916635238315 1142.568774114463 2 572.775390625 MULTI HCD FTMS 0 0 0 11968 5881.63232421875 0.13556336982004177 6 -0.16386795043945312 5 Unmodified _IYLTTPYSW_ L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|16|1|anti-sense 23.1484247019978 0.1603590852062899 1 ASVSW 5 7 40.732 0 0 3.5649 0 0 594.3139578532101 0 594.3139578532101 0 7.4041782993998595 0 0 0 0.3054621874040891 0 0.75 0 ASVSW 3.5649 - 615 + NaN NaN 219485.2 NaN 9183 2788 11968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11975 55.452 NaN 456520 35 0 45293 0.327 + 20703 PFSKPFNEI 9 75 539.7837681917873 NaN 0 539.79833984375 PEAK HCD FTMS 0 0 0 11974 5919.626953125 0.35353468900986573 2 -0.05905914306640625 1 Unmodified _PFSKPFNEI_ REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1 14.838274106304384 0.2220448417561729 1 ENT{I|L} 4 -1 23.8 0 0 2.2087 0 0 131.06471656847947 486.24712372739776 617.3118402958772 0 0 0 0 0 0 0 0.4247425010840047 0 ENT{I|L} 2.2087 - 72 + NaN NaN 156235.6 NaN 9184 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11976 55.457 NaN 357430 35 0 32029 0.261 + 18244 MPDVDLHL 8 75 478.2313836346678 954.4482143361356 2 478.23150634765625 MULTI HCD FTMS 0 0 0 11974 161899.171875 0.13821498099267507 -23 0.6090736389160156 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 67.858 0 0 7.1097 7.1097 87.781 0 0 0 5.954387282529794 5.954387282529794 5.954387282529794 5.954387282529794 0 2.1989700043360187 1.0457574905606752 1.079689690656103 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L} 7.1097;6.4858;3.7382;2.2058 +;+;-;- + 202 NaN NaN 131784.3 NaN 9185 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11977 55.46 NaN 457710 35 0 30864 0.261 + 4233 EVFDKTYQF 9 94 588.7814768547537 1175.5484007763073 2 588.7825317382812 MULTI HCD FTMS 0 0 0 11974 155441.296875 0.8590855228627057 2 -0.05905914306640625 3 Unmodified _EVFDKTYQF_ ENSG00000124541|ENST00000244496|RRP36;nc|ENSG00000124541|Q96EU6-2|RRP36 67.83816525789305 0.009787749748478139 1 NN{M(Oxidation (M))|F}DKT 6 5 41.303 0 0 3.5135 0 0 0 453.1771639459594 453.1771639459594 7.56917380648752 0 0 0 0 0.5649093276264391 0 0.3807196863200844 0.3252574989159953 NN{M(Oxidation (M))|F}DKT 3.5135 - 1344 + NaN NaN 153292.6 NaN 9186 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11978 55.464 NaN 294940 35 0 50333 0.261 + 35245 YVQDYEDFM 9 47 613.2394789778416 1224.464405022483 2 613.2398681640625 MULTI HCD FTMS 0 0 0 11974 136227.828125 1 0 0 4 Oxidation (M) _YVQDYEDFM(Oxidation (M))_ CTDSPL2-EIF3J|1|fusion;ENSG00000104131|ENST00000261868|EIF3J;nc|ENSG00000104131|O75822-2|EIF3J;nc|ENSG00000104131|O75822-3|EIF3J 45.739877483867886 0.03899552410870734 1 DYED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 59.954 0 0 4.8963 0 0 390.1909657209 0 390.1909657209 0 51.99478448944497 0 0 0 2.2302046884880937 0 0 0 + DYED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8963 + + 101 NaN NaN 119932.5 NaN 9187 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11979 55.467 NaN 189990 35 0 18810 0.261 + -1 LECCDGNFF 9 58 552.7096840581843 1103.4048151831685 2 552.7100219726562 MULTI HCD FTMS 0 0 0 11974 60309.67578125 0.42209594777663123 5 -0.1442718505859375 5 Carbamidomethyl (C) _LEC(Carbamidomethyl (C))CDGNFF_ REV__ENSG00000196233|ENST00000421806|LCOR 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4 -1 32.907 0 0 2.9823 0 0 541.1650213372685 0 541.1650213372685 0 21.938200260161125 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 2.9823 - 47 + NaN NaN 127838.4 NaN 9188 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11980 55.47 NaN 415100 35 0 23917 0.261 + 29121 TYIESASEL 9 83 506.7454824915593 1011.4764120499186 2 506.73602294921875 MULTI HCD FTMS 0 0 0 11974 64352.87109375 0.7535595289401867 -1 0.019596099853515625 6 Unmodified _TYIESASEL_ ENSG00000158089|ENST00000349752|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14 49.93300154707207 0.03166451819912738 1 [YT]{I|L}{[ES]|[DT]|[{I|L}C]}ASE{I|L} 9 0 + 51.851 0 0 5.1263 5.1263 90.684 0 0 0 6.733485135259727 28.946020033459305 6.733485135259727 35.47306072512796 0 1.274227503252014 1.3979400086720375 0.6747425010840047 0 + + [YT]{I|L}{[ES]|[DT]|[{I|L}C]}ASE{I|L};{[ES]|[DT]|[{I|L}C]}{[SA]|[TG]}{I|L}[YT]E{I|L};[YT]{[NV]|[RG]}HHE{I|L};[YN]{[TV]|[{I|L}S]}HHE{I|L};[VP][DN]{[NV]|[RG]}HA{M(Oxidation (M))|F} 5.1263;1.6192;1.3243;0.77776;0.39907 +;-;-;-;- + 475 NaN NaN 148820.1 NaN 9189 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11981 55.474 NaN 618710 35 0 74550 0.261 + 5392 FGSVYRAAYE 10 83 581.7797194523127 1161.5448859714254 2 581.2587280273438 MULTI HCD FTMS 0 0 0 11974 33112.54296875 0.2714045886423884 -3 0.08205795288085938 7 Unmodified _FGSVYRAAYE_ ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40692272-40758932:+|nuORF;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant 13.90604991867851 0.3810395177745597 1 SVSW 4 8 34.725 0 0 2.9895 0 0 684.3217062680527 0 684.3217062680527 0 9.619054813954424 0 0 0 0.2302046884880938 0 0.3494850021680094 0 SVSW 2.9895 - 314 + NaN NaN 184813.9 NaN 9190 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11982 55.477 NaN 404020 35 0 52764 0.264 + -1 SWCPTSPLSVS 11 73 407.5257237819288 1219.5553419459864 3 407.52618408203125 MULTI HCD FTMS 0 0 0 11974 44320.1953125 0.22651245678064616 -2 0.05914306640625 8 Carbamidomethyl (C) _SWC(Carbamidomethyl (C))PTSPLSVS_ REV__ENST00000525714.1_1_11:58726163-58726262:-|nuORF 4.715918219556657 0.3982382512160552 1 SA 2 -1 17.959 0 0 1.4726 0 0 0 1058.4508986804221 1058.4508986804221 0.9691001300805624 0 0 0 0 0 0 0 0 SA 1.4726 - 16 + NaN NaN 144936.6 NaN 9191 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11983 55.48 NaN 127930 35 0 11042 0.261 + 32626 WLSEGDFDFF 10 49 421.5184950912567 NaN 0 421.51776123046875 PEAK HCD FTMS 0 0 0 11974 20428.65625 0.5477891611248659 -1 0.019596099853515625 9 Unmodified _WLSEGDFDFF_ ENST00000420969.1_1_2:162362657-162362750:-|nuORF 1.6526216038709556 0.33876987398426067 1 T 1 10 2.7642 0 0 0.32867 0 0 466.7909441846634 270.15680872135005 736.9477529060134 0 0 0 0 0 0 0 0 0 T 0.32867 - 3 + NaN NaN 115401.4 NaN 9192 2789 11974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11985 55.485 NaN 607950 35 0 97521 0.327 + 5695 FPAGYMYPSM 10 90 598.2429929396999 1194.4714329461997 2 598.2435302734375 MULTI HCD FTMS 0 0 0 11984 230847 0.8317446112726774 -6 0.17401123046875 1 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 1 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 5 + 67.135 0 0 5.6205 5.6205 89.151 0 0 0 5.970450428457205 5.970450428457205 5.970450428457205 13.021819147186008 0 2.079689690656103 1.5228787452803376 0.6549471895720984 0 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F} 5.6205;4.5303;4.3465;4.2462;4.1832;4.1444;3.864;3.6163;2.2578;1.8728 -;-;-;-;-;+;-;-;-;- + 1032 NaN NaN 171225 NaN 9193 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11986 55.49 NaN 351850 35 0 36718 0.261 -1 VMAPRTLLL 9 67 515.3096841063503 1028.6048152795006 2 515.3099975585938 MULTI HCD FTMS 0 0 0 11984 171155.625 0.4218680821315531 7 -0.19346237182617188 2 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 1 AD{I|L} 3 -1 33.188 0 0 3.2265 0 0 711.4641729244646 0 711.4641729244646 0 16.197887582883936 0 0 0 1 0 0 0 AD{I|L} 3.2265 - 69 NaN NaN 139062.5 NaN 9194 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11987 55.493 NaN 276620 35 0 35247 0.261 -1 KYAMMFAEL 9 89 568.2614597677415 1134.5083666022829 2 568.261962890625 MULTI HCD FTMS 0 0 0 11984 108671.75 0.4473629739463995 14 -0.39356231689453125 3 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}{I|L}DT 7 -1 28.561 0 0 2.5175 0 0 0 257.0466716162079 257.0466716162079 0.46938492162595935 0 0 0 0 0 1.6989700043360187 0.2742275032520141 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}{I|L}DT 2.5175 - 554 NaN NaN 124663 NaN 9195 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11988 55.497 NaN 212880 35 0 22402 0.261 + 26899 SYKIKQQTI 9 65 554.821573921432 1107.628594909664 2 554.8212890625 MULTI HCD FTMS 0 0 0 11984 51288.88671875 0.02349336716809688 28 -0.7676315307617188 4 Unmodified _SYKIKQQTI_ REV__ENSG00000149311|ENST00000675843|ATM;REV__ENST00000524792.5_1_11:108158320-108236232:+|nuORF;REV__ENST00000531957.1_1_11:108164147-108165800:+|nuORF 13.042465956692817 0.2476723265019929 1 TT{I|L} 3 -1 34.169 0 0 3.0849 0 0 774.4377715083668 0 774.4377715083668 0 6.746199743006045 0 0 0 0.9247425010840047 0 0.5 0 TT{I|L} 3.0849 - 132 NaN NaN 116321.2 NaN 9196 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11989 55.5 NaN 166550 35 0 22364 0.261 + 15029 LLPHEELL 8 49 482.2790063776288 962.5434598220576 2 482.78106689453125 MULTI HCD FTMS 0 0 0 11984 31954.7890625 0.5779705219296597 -4 0.11490631103515625 5 Unmodified _LLPHEELL_ ENST00000336095.10_1_20:3914522-3914756:-|nuORF 12.531546534597751 0.5015908124873912 1 E{I|L}{I|L} 3 5 31.198 0 0 3.2412 0 0 589.3231961639085 0 589.3231961639085 0 30.484550065040278 0 0 0 0.5 0 0 0 + E{I|L}{I|L} 3.2412 + + 7 NaN NaN 106343.3 NaN 9197 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11990 55.503 NaN 170130 35 0 54748 0.261 -1 RARCGVQF 8 46 497.2568894393569 NaN 0 497.256591796875 PEAK HCD FTMS 0 0 0 11984 26831.3515625 0.358293758666114 8 -0.22304534912109375 6 Carbamidomethyl (C) _RARC(Carbamidomethyl (C))GVQF_ ENST00000497543.5_1_3:75483880-75484075:-|nuORF 5.230669730166228 0.38822285293237185 1 QS 2 -1 13.583 0 0 1.3686 0 0 165.10489108398878 609.2824024016105 774.3872934855992 0 0 0 0 0 0 0 0 0.5 QS 1.3686 - 10 + NaN NaN 109501.7 NaN 9198 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11991 55.507 NaN 549550 35 0 77287 0.262 + 26640 SWSLPDGTMIN 11 81 407.5257237819288 1219.5553419459864 3 407.5257873535156 MULTI HCD FTMS 0 0 0 11984 121885.7421875 0.622935858354315 -1 0.032848358154296875 7 Unmodified _SWSLPDGTMIN_ ENSG00000152580|ENST00000282466|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF;nc|ENSG00000152580|Q6WRI0-2|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10 7.0370850670814 0.388058401935362 1 SA 2 10 17.959 0 0 1.4726 0 0 0 1058.451064014293 1058.451064014293 3.2660625688767198 0 0 0 0 0 0 0 0 SA 1.4726 - 42 + NaN NaN 177045 NaN 9199 2790 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11993 55.512 NaN 2039700 35 0 210520 0.327 + 22849 QYMERLQLL 9 115 605.3181977852719 1208.6218426373437 2 605.3186645507812 MULTI HCD FTMS 0 0 0 11992 1164665.125 1 0 0 1 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 137.42381684818497 0.00015474832393368816 1 [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L} 9 0 + 77.159 0 0 6.384 6.384 88.609 0 0 0 12.095690636129888 42.05211330865416 12.095690636129888 9.208187539523749 0 2.4049471895720984 1.0969100130080565 0.9392404878284264 2.5 + + [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L};[YQ]{M(Oxidation (M))|F}ER{I|L}[AG]{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[DP]TH{I|L}Q{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[YG]ER{I|L}Q{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}R{I|L}Q{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[DP]TH{I|L}[AG]{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}]Q{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}][AG]{I|L}{I|L};{[NV]|[RG]}{I|L}Y{M(Oxidation (M))|F}{[CP]|[EA]}Q{I|L}{I|L};{[NV]|[RG]}{I|L}Y{M(Oxidation (M))|F}{[CP]|[EA]}[AG]{I|L}{I|L} 6.384;5.6222;4.9405;4.1975;4.0292;3.3548;3.2372;2.4753;2.3977;1.1339 +;-;-;-;-;-;-;-;-;- + 1443 NaN NaN 394813.4 NaN 9200 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11994 55.516 NaN 1198000 35 0 96260 0.261 -1 LLSLCHTVM 9 105 545.2738260536133 1088.5330991740266 2 545.7657470703125 MULTI HCD FTMS 0 0 0 11992 16359.4853515625 0.34089049552755174 26 -0.7219276428222656 2 Carbamidomethyl (C),Oxidation (M) _LLSLC(Carbamidomethyl (C))HTVM(Oxidation (M))_ ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2 23.1484247019978 0.1603590852062899 1 S{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}V]TV{M(Oxidation (M))|F} 8 -1 34.211 0 0 3.1428 0 0 130.1115182608765 0 130.1115182608765 0 10.405782828345885 0 0 0 0.6861818737241735 0 1.6237125054200234 0 S{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}V]TV{M(Oxidation (M))|F} 3.1428 - 2926 + NaN NaN 260554.5 NaN 9201 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11995 55.52 NaN 1426800 35 0 277630 0.261 + 30433 VLPKLYVKL 9 77 536.8600607510731 1071.705568568946 2 536.8601684570312 MULTI HCD FTMS 0 0 0 11992 564953.75 0.6175239076122269 -3 0.07865524291992188 3 Unmodified _VLPKLYVKL_ ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11 71.92227651296345 0.008466197542043549 1 {I|L}VPK{I|L}YVK{I|L} 9 2 + 76.321 0 0 7.1215 7.1215 87.346 0 0 0 59.655468522418275 9.934239665113708 9.934239665113708 4.771212547196626 0 1.7440840204505514 2 0 0.6307196863200843 {I|L}VPK{I|L}YVK{I|L};V{I|L}PK{I|L}YVK{I|L};{I|L}V{I|L}[KP]YVK{I|L};V{I|L}{I|L}[KP]YVK{I|L};[KP]{I|L}YV{I|L}VK{I|L};[KP]{I|L}YVK{I|L}V{I|L};[KP]{I|L}YV{I|L}KV{I|L};[KP]{I|L}V{I|L}YVK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y[{I|L}P]{I|L}VK{I|L};[KP]{I|L}V{I|L}YKV{I|L} 7.1215;6.6763;6.2145;5.7693;2.7548;2.1967;2.1478;1.8479;1.6097;1.2409 -;+;-;-;-;-;-;-;-;- + 168 + NaN NaN 305024.9 NaN 9202 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11996 55.523 NaN 1127400 35 0 145350 0.261 + 5393 FGSVYRAAYE 10 91 581.7797194523127 1161.5448859714254 2 581.7800903320312 MULTI HCD FTMS 0 0 0 11992 452615.53125 0.8220928160162742 -2 0.05905914306640625 4 Unmodified _FGSVYRAAYE_ ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40692272-40758932:+|nuORF;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant 10.823927491677226 0.4098686510432541 1 ASVSW 5 8 40.943 0 0 3.5249 0 0 613.2816546255254 0 613.2816546255254 0 9.27440017027358 0 0 0 0 0 0.75 0 ASVSW 3.5249 - 837 + NaN NaN 265632.4 NaN 9203 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11997 55.526 NaN 758550 35 0 71393 0.261 -1 ECVPNVSVSVS 11 101 588.7814768547537 1175.5484007763073 2 588.7693481445312 MULTI HCD FTMS 0 0 0 11992 33857.87890625 0.1871241052922279 4 -0.11146926879882812 5 Carbamidomethyl (C) _EC(Carbamidomethyl (C))VPNVSVSVS_ CON__ENSEMBL:ENSBTAP00000038253 18.373094154950223 0.29699704000378496 1 R{[YC]|[HE]}SVSW 7 -1 46.066 0 0 3.9187 0 0 276.11201674629064 0 276.11201674629064 0 9.03889480510788 0 0 0 0 0 1.555462187404089 0 R{[YC]|[HE]}SVSW 3.9187 - 1058 NaN NaN 214225.7 NaN 9204 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11998 55.529 NaN 421870 35 0 48151 0.261 + 29693 VCSHQDKEKG 10 84 565.7671553143872 1129.5197576955743 2 565.7672729492188 MULTI HCD FTMS 0 0 0 11992 203106.609375 0.9447228924103757 -2 0.05905914306640625 6 Unmodified _VCSHQDKEKG_ ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-2|SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant 27.628801355627647 0.2527626205058048 1 VCSV 4 7 38.778 0 0 3.4331 0 0 0 738.3223360650999 738.3223360650999 29.12413175752281 0 0 0 0 1 0 0.805462187404089 0 VCSV 3.4331 - 222 + NaN NaN 152033.9 NaN 9205 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 11999 55.533 NaN 367600 35 0 24313 0.261 + 16542 LTRQVPYPA 9 82 522.7953228393754 1043.5760927455508 2 522.7957763671875 MULTI HCD FTMS 0 0 0 11992 86948.546875 0.029695957790051023 17 -0.4823570251464844 7 Unmodified _LTRQVPYPA_ REV__ENST00000558530.1_1_20:35238119-35240623:+|nuORF;REV__nc|ENSG00000101084|Q9BUV8-5|RAB5IF 4.75600775471527 0.31496297302216103 1 [{I|L}T][PS]{[{M(Oxidation (M))|F}H]|[RQ]}AAA 9 -1 14.912 0 0 1.4289 0 0 0 145.0956663821967 145.0956663821967 7.9221966125412315 0 0 0 0 0 1.2218487496163564 0.6549471895720984 0 [{I|L}T][PS]{[{M(Oxidation (M))|F}H]|[RQ]}AAA 1.4289 - 408 NaN NaN 147230.5 NaN 9206 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12000 55.536 NaN 189480 35 0 18181 0.261 + 26418 STETHEELL 9 73 529.753630519962 1057.492708106724 2 529.7540283203125 MULTI HCD FTMS 0 0 0 11992 37752.08203125 0.35011387854718 26 -0.7219276428222656 8 Unmodified _STETHEELL_ ENSG00000110717|ENST00000313468|NDUFS8 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 7 22.167 0 0 2.0962 0 0 666.281541892775 0 666.281541892775 0 7.562893943202624 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.0962 - 98 NaN NaN 137780.9 NaN 9207 2791 11992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12002 55.541 NaN 1612200 35 0 124470 0.326 + 34281 YPDRIMNTF 9 114 578.7764311978499 1155.5383094624997 2 578.7769775390625 MULTI HCD FTMS 0 0 0 12001 996885.625 0.37361076834542833 5 -0.13778305053710938 1 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 148.26817274609934 1.0657023776783114E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F} 9 0 + 82.884 0 0 7.1727 7.1727 88.491 0 0 0 7.293103260545365 16.478174818886373 7.293103260545365 7.293103260545365 0 2.2302046884880937 1.154901959985743 0.25 1.066901560044258 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MGGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]YR{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPYGGT{M(Oxidation (M))|F} 7.1727;6.5416;6.3759;6.0891;5.9367;5.7447;5.5452;5.2922;5.2382;5.1398 +;-;-;-;-;-;-;-;-;- + 5387 NaN NaN 324378.5 NaN 9208 2792 12001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12003 55.545 NaN 971020 35 0 147440 0.261 + -1 NETNFREEM 9 105 593.2452042705696 1184.4758556079391 2 593.2455444335938 MULTI HCD FTMS 0 0 0 12001 332998.375 0.5081601204330103 11 -0.3150367736816406 2 Oxidation (M) _NETNFREEM(Oxidation (M))_ REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000461872.6_1_6:152697909-152949466:-|nuORF;REV__nc|ENSG00000131018|Q8NF91-10|SYNE1;REV__nc|ENSG00000131018|Q8NF91-4|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1 13.042465956692817 0.2476723265019929 1 {I|L}V{I|L}DE 5 -1 69.527 0 0 5.8698 0 0 0 612.1476932068368 612.1476932068368 38.53556095747217 0 0 0 0 1.774227503252014 1.6989700043360187 0.5866968715561641 0 {I|L}V{I|L}DE 5.8698 - 486 + NaN NaN 246793.7 NaN 9209 2792 12001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12004 55.549 NaN 321990 35 0 35926 0.261 + 9925 IDFRIGYLK 9 66 562.8267304820112 1123.6389080308222 2 562.8270874023438 MULTI HCD FTMS 0 0 0 12001 81959.953125 0.6297579607770915 -4 0.108123779296875 3 Unmodified _IDFRIGYLK_ REV__ENSG00000099957|ENST00000413302|P2RX6;REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF;REV__nc|ENSG00000099957|O15547-2|P2RX6 19.361941925380144 0.1930734562688509 1 YK{I|L} 3 -1 29.425 0 0 2.6187 0 0 701.3867062649359 0 701.3867062649359 0 9.99536784977877 0 0 0 0.9247425010840047 0 0 0 YK{I|L} 2.6187 - 88 NaN NaN 143876.5 NaN 9210 2792 12001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12005 55.552 NaN 334330 35 0 91912 0.261 + 18320 MPETTETVL 9 52 510.74948611524405 1019.4844192972881 2 510.7492980957031 MULTI HCD FTMS 0 0 0 12001 171513.421875 0.17017790819595519 -7 0.2133941650390625 4 Unmodified _MPETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 32.30548876998284 0.10066689432505688 1 ETV{I|L} 4 5 51.414 0 0 5.0432 0 0 559.2345448224625 0 559.2345448224625 0 45.929862658764264 0 0 0 1.3807196863200843 0 0.805462187404089 0 + ETV{I|L} 5.0432 + + 27 NaN NaN 139272.1 NaN 9211 2792 12001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12006 55.556 NaN 103650 35 0 10587 0.261 -1 YYMKDLPTSF 10 42 640.7968770121664 1279.5792010911327 2 640.7975463867188 MULTI HCD FTMS 0 0 0 12001 35447.078125 0.21767742417099833 17 -0.482421875 5 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 15.738622578938676 0.3638982514236938 1 YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 31.069 0 0 2.428 0 0 0 656.3117159479124 656.3117159479124 7.740924734143498 0 0 0 0 0.23965182871044374 1.6989700043360187 0 0 YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.428 - 12 + NaN NaN 101709.5 NaN 9212 2792 12001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12007 55.559 NaN 98412 35 0 13580 0.261 + 33646 YIYIENQFF 9 43 618.8019612840965 1235.5893696349929 2 618.8017578125 MULTI HCD FTMS 0 0 0 12001 30666.873046875 0.810468465652294 3 -0.082000732421875 6 Unmodified _YIYIENQFF_ ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF;nc|ENSG00000075651|Q13393-2|PLD1;nc|ENSG00000075651|Q13393-4|PLD1 22.736283301280096 0.1639198954644489 1 [Y{I|L}]Y{I|L} 4 5 43.94 0 0 3.5562 0 0 0 680.2736910455686 680.2736910455686 22.971062485323515 0 0 0 0 0.9247425010840047 2 0 0 + [Y{I|L}]Y{I|L} 3.5562 + + 15 + NaN NaN 102871.1 NaN 9213 2792 12001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12009 55.564 NaN 6768500 35 0 706990 0.327 + 19984 NYIDKVRFL 9 126 584.329258802008 1166.6439646708159 2 584.329833984375 MULTI HCD FTMS 0 0 0 12008 4139478.75 0.9695151556174083 1 -0.032871246337890625 1 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 168.5375213894962 4.622051367253751E-09 1 [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L} 9 0 + 107.18 0 0 9.1871 9.1871 88.28 0 0 0 0.07032000564238672 0.07032000564238672 0.07032000564238672 0.07032000564238672 0 2.805462187404089 2 0.3252574989159953 2.4604093769761874 + + [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L};NY{I|L}DKVR{I|L}{M(Oxidation (M))|F};NY{I|L}DKV{I|L}R{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKVR{M(Oxidation (M))|F}{I|L};{I|L}[YN]DKVR{I|L}{M(Oxidation (M))|F};NY{I|L}{I|L}[QT]R{I|L}{M(Oxidation (M))|F};{I|L}[YN]DKV{I|L}R{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKV[VG]{M(Oxidation (M))|F}{I|L};[YN]{I|L}[RV]S[VG]{M(Oxidation (M))|F}{I|L};NY{I|L}{I|L}[QT]{I|L}R{M(Oxidation (M))|F} 9.1871;9.1811;8.6269;6.7839;6.7167;6.3741;6.1625;5.9946;5.915;5.8199 +;-;-;-;-;-;-;-;-;- + 5351 NaN NaN 676414.9 NaN 9214 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12010 55.568 NaN 571980 35 0 105190 0.262 + 16619 LVVHVEPAL 9 61 488.79497667222347 975.575400411247 2 488.7950744628906 MULTI HCD FTMS 0 0 0 12008 417485.6875 0.7740325651762399 3 -0.08535003662109375 2 Unmodified _LVVHVEPAL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 64.23631603340823 0.01165516075559909 1 {I|L}VSEV 5 6 66.253 0 0 6.7912 0 0 0 445.25632654361567 445.25632654361567 43.32129649978393 0 0 0 0 1.5451140161145327 1.5228787452803376 0.8494850021680094 0 {I|L}VSEV 6.7912 - 112 + NaN NaN 181273.8 NaN 9215 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12011 55.572 NaN 245300 35 0 49954 0.261 + 8976 HPDYSFGEL 9 59 532.73796200721 1063.4613710812198 2 532.7380981445312 MULTI HCD FTMS 0 0 0 12008 143124.390625 0.8070795095649461 5 -0.14449310302734375 3 Unmodified _HPDYSFGEL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1 41.8396318013385 0.056899836730939755 1 YS{M(Oxidation (M))|F}GE{I|L} 6 3 51.564 0 0 4.8487 0 0 349.13826186347814 0 349.13826186347814 0 36.96038326757167 0 0 0 1.2302046884880937 0 0.28872548999643577 0 + YS{M(Oxidation (M))|F}GE{I|L} 4.8487 + + 206 NaN NaN 122726.6 NaN 9216 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12012 55.575 NaN 386300 35 0 31336 0.261 + 12735 KYAPSGFYI 9 74 523.2714728745176 1044.528392815835 2 523.2714233398438 MULTI HCD FTMS 0 0 0 12008 104569.5078125 0.7010246089027721 1 -0.032871246337890625 4 Unmodified _KYAPSGFYI_ ENSG00000071127|ENST00000499869|WDR1 36.506200033944 0.08138327636155518 1 [YK]A[PS]G{M(Oxidation (M))|F}Y{I|L} 9 0 + 46.321 0 0 4.4347 4.4347 89.54 0 0 0 4.762036441594191 19.454321750294667 4.762036441594191 35.300084529637985 0 1.6989700043360187 0 0 0 + + [YK]A[PS]G{M(Oxidation (M))|F}Y{I|L};[YK]A[PS][Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]};[DP][RK]W{[NV]|[RG]}M 4.4347;1.0551;0.77155 +;-;- + 276 NaN NaN 143838.6 NaN 9217 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12013 55.579 NaN 176950 35 0 74804 0.261 -1 0 48 492.3014519093799 491.29417544277993 1 492.3017272949219 MULTI HCD FTMS 0 0 0 12008 109216.484375 0.3361222440890547 10 -0.2921638488769531 5 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 2.7642 0 0 0.56264 0 0 87.12402271016119 241.10784326724846 328.23186597740965 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.56264 - 2 + NaN NaN 101327.7 NaN 9218 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12014 55.582 NaN 246330 35 0 32236 0.261 + 24111 RYAQNVAFF 9 58 558.2852762633314 1114.5559995934627 2 559.2713623046875 MULTI HCD FTMS 0 0 0 12008 22042.31640625 0.5261133551902624 -1 0.0228729248046875 6 Unmodified _RYAQNVAFF_ ENSG00000169740|ENST00000374433|ZNF32 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}[YV]{I|L}YV{M(Oxidation (M))|F} 7 6 30.622 0 0 2.7475 0 0 165.07768035693772 0 165.07768035693772 0 9.43143825037879 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}[YV]{I|L}YV{M(Oxidation (M))|F} 2.7475 - 136 + NaN NaN 115293.6 NaN 9219 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12015 55.585 NaN 139910 35 0 12344 0.261 -1 MPDGQFKDISL 11 63 633.8053974265821 1265.596241919964 2 633.8050537109375 MULTI HCD FTMS 0 0 0 12008 80238.1015625 0.18849742994681645 10 -0.2921638488769531 7 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 19.986897341741983 0.28293591992651296 1 {M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}S{I|L} 6 -1 34.882 0 0 2.7562 0 0 544.1935291974625 0 544.1935291974625 0 27.43501263708417 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}S{I|L} 2.7562 + + 26 NaN NaN 118435.8 NaN 9220 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12016 55.589 NaN 446610 35 0 69421 0.261 -1 IYPEVVHMF 9 67 575.7837621076106 1149.5529712820212 2 576.28564453125 MULTI HCD FTMS 0 0 0 12008 59455.7265625 0.3060433558803557 -10 0.28539276123046875 8 Oxidation (M) _IYPEVVHM(Oxidation (M))F_ ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C 32.116972079565 0.101532291542178 1 [Y{I|L}][EP]VV 6 -1 36.444 0 0 3.1703 0 0 0 446.1506943973713 446.1506943973713 31.83992802389298 0 0 0 0 1 1.6989700043360187 0.3054621874040891 0 [Y{I|L}][EP]VV 3.1703 + + 154 + NaN NaN 159497.4 NaN 9221 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12017 55.592 NaN 258650 35 0 39704 0.261 + 33501 YIDKVRFL 8 69 527.3081995235264 1052.6018461138526 2 527.3084716796875 MULTI HCD FTMS 0 0 0 12008 78218.3203125 1 0 0 9 Unmodified _YIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 51.629811660486645 0.11767674546718239 1 {I|L}YDKVR{I|L}{M(Oxidation (M))|F} 8 4 + 95.559 0 0 9.0783 9.0783 94.02 0 0 0 84.13216313255916 13.399480616943507 13.399480616943507 9.827796776480469 0 1.610924374808178 2 0.3807196863200844 0.3807196863200844 {I|L}YDKVR{I|L}{M(Oxidation (M))|F};Y{I|L}DKVR{I|L}{M(Oxidation (M))|F};{I|L}Y{I|L}[QT]R{I|L}{M(Oxidation (M))|F};Y{I|L}{I|L}[QT]R{I|L}{M(Oxidation (M))|F} 9.0783;8.1447;6.5572;5.6236 -;-;-;- 199 + NaN NaN 121764.6 NaN 9222 2793 12008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12019 55.597 NaN 2499900 35 0 462750 0.327 -1 CLESFVVGSM 10 113 572.7560370128239 NaN 0 572.7750244140625 PEAK HCD FTMS 0 0 0 12018 39359.25 1 0 0 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LESFVVGSM(Oxidation (M))_ ENST00000569549.5_1_16:74943656-74957850:-|nuORF 29.081581746732265 0.20707020642974738 1 SVYTSVS 7 -1 37.05 0 0 3.24 0 0 216.05195672817337 201.06720911197502 417.1191658401484 0 0 0 0 0 0 0 1.3129529932484498 0 SVYTSVS 3.24 - 1941 + NaN NaN 463005.1 NaN 9223 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12020 55.601 NaN 2351300 35 0 331950 0.263 -1 MLTISWLTLTC 11 82 433.22225614597284 1296.6449390381185 3 433.2225646972656 MULTI HCD FTMS 0 0 0 12018 694018.1875 1 0 0 2 Oxidation (M) _M(Oxidation (M))LTISWLTLTC_ CEMIP|p.P37Lfs*64|1|0.09|ENSG00000103888|chr15:80878734-80878734|C/-|frameshift_variant;ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP 4.406150317652783 0.39959678800402487 1 {I|L}GD{I|L}[HC] 6 -1 39.213 0 0 3.0242 0 0 640.3447999168753 0 640.3447999168753 0 -0.4937702680627254 -0.4937702680627254 0 0 0.2302046884880938 0 0.8494850021680094 0 {I|L}GD{I|L}[HC] 3.0242 - 186 NaN NaN 443234.5 NaN 9224 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12021 55.605 NaN 400590 35 0 60148 0.261 -1 KYLGIINMF 9 74 557.8001023218674 1113.5856517105346 2 558.28515625 MULTI HCD FTMS 0 0 0 12018 19916.783203125 0.6935164458124871 2 -0.052478790283203125 3 Oxidation (M) _KYLGIINM(Oxidation (M))F_ ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;nc|ENSG00000111731|Q86YS7|C2CD5 14.838274106304384 0.23215694253501695 1 VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 26.542 0 0 2.3835 0 0 631.3364889681503 0 631.3364889681503 0 12.629106573952456 0 0 0 0 0 0 0 VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3835 - 92 + NaN NaN 148578 NaN 9225 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12022 55.608 NaN 310580 35 0 24026 0.261 + 16348 LRRYVRPFFLL 11 61 493.9691416665467 1478.8855955998401 3 494.30364990234375 MULTI HCD FTMS 0 0 0 12018 74700.921875 0.371578150840152 5 -0.13787078857421875 4 Unmodified _LRRYVRPFFLL_ REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF 1.1097533296519684 0.4140536653900533 1 {I|L}P 2 -1 19.464 0 0 1.3161 0 0 0 1265.7290288277063 1265.7290288277063 12.474250108400469 0 0 0 0 0 0 0 0 {I|L}P 1.3161 - 21 + NaN NaN 135087.7 NaN 9226 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12023 55.611 NaN 224830 35 0 16944 0.261 + 17160 LYLQSSVRI 9 65 539.8164806223592 1077.6184083115184 2 539.7982788085938 MULTI HCD FTMS 0 0 0 12018 25059.66796875 0.6901221770479614 -1 0.032871246337890625 5 Unmodified _LYLQSSVRI_ EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3 13.042465956692817 0.2476723265019929 1 [Y{I|L}]{I|L}Q 4 5 30.718 0 0 2.8506 0 0 0 557.3058781267177 557.3058781267177 20.541134294324124 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 + [Y{I|L}]{I|L}Q 2.8506 + + 58 + NaN NaN 128258.9 NaN 9227 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12024 55.615 NaN 277550 35 0 83666 0.261 -1 WHCEHCEGY 9 57 610.7177476446667 1219.4209423561333 2 610.7179565429688 MULTI HCD FTMS 0 0 0 12018 47085.17578125 0.8414553517782157 1 -0.026256561279296875 6 Carbamidomethyl (C) _WHC(Carbamidomethyl (C))EHCEGY_ GRM8|p.R540H|1|0.19|ENSG00000179603|chr7:126533763-126533763|C/T|missense_variant 0.6014990680409731 0.3464572424761564 1 A 1 -1 3.0989 0 0 0.25413 0 0 86.90737977486704 1058.4545714168432 1145.3619511917102 0 0 0 0 0 0 0 0 0 A 0.25413 - 5 + NaN NaN 134851.5 NaN 9228 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12025 55.618 NaN 212970 35 0 26113 0.261 + 20562 PEEKPPRYIA 10 56 600.32479801135 1198.6350430895 2 600.324951171875 MULTI HCD FTMS 0 0 0 12018 40772.9140625 0.7396700156333299 1 -0.026256561279296875 7 Unmodified _PEEKPPRYIA_ ENSG00000071909|ENST00000408978|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;ENST00000602629.1_1_2:171225816-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-6|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B 7.289230182591677 0.43672065049472153 1 [EP]YA 4 6 19.041 0 0 1.5886 0 0 0 735.4163290604562 735.4163290604562 9.577118610328341 0 0 0 0 0 1.3010299956639813 0 0 [EP]YA 1.5886 - 45 NaN NaN 114738 NaN 9229 2794 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12027 55.623 NaN 781450 35 0 76598 0.327 + 18245 MPDVDLHL 8 85 478.2313836346678 954.4482143361356 2 478.2313537597656 MULTI HCD FTMS 0 0 0 12026 376639.09375 0.32154065138731647 -17 0.46567535400390625 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 83.058 0 0 8.7022 8.7022 94.828 0 0 0 15.013735776358544 15.013735776358544 15.013735776358544 15.013735776358544 0 2.305462187404089 1.0969100130080565 1.5669015600442577 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};{[ES]|[DT]|[{I|L}C]}Q{M(Oxidation (M))|F}[KT]C{I|L} 8.7022;7.1291;4.3815;0.6359;0.61559;0.36025 +;+;-;-;-;- + 551 NaN NaN 208006.3 NaN 9230 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12028 55.627 NaN 604820 35 0 97518 0.261 + 5696 FPAGYMYPSM 10 84 598.2429929396999 1194.4714329461997 2 598.2435302734375 MULTI HCD FTMS 0 0 0 12026 176704.9375 0.6366700869012821 -1 0.026256561279296875 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 125.62461146993168 2.8380270204069364E-05 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 53.315 0 0 4.4635 0 0 535.2452736346756 0 535.2452736346756 0 33.85151878060192 0 0 0 1.805462187404089 0 0.3807196863200844 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.4635 + + 634 NaN NaN 185877 NaN 9231 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12029 55.631 NaN 634560 35 0 41207 0.264 + 22005 QFLGQMCLEF 10 89 405.8558753740068 1214.5457967222205 3 405.85614013671875 MULTI HCD FTMS 0 0 0 12026 237165.09375 0.8235663139321193 -1 0.026256561279296875 3 Unmodified _QFLGQMCLEF_ REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF 16.149105407346934 0.3600587335443843 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[EP]D{I|L}R 9 -1 35.296 0 0 2.9061 0 0 0 115.97859002183182 115.97859002183182 14.811089617810367 0 0 0 0 0.6307196863200843 0.958607314841775 0.5 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[EP]D{I|L}R 2.9061 - 511 NaN NaN 195513.7 NaN 9232 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12030 55.634 NaN 620630 35 0 73619 0.261 + 13051 KYLDEDTIYHL 11 81 470.569659295816 1408.687148487648 3 470.5699462890625 MULTI HCD FTMS 0 0 0 12026 205186.1875 0.4043591251770468 -4 0.11146926879882812 4 Unmodified _KYLDEDTIYHL_ ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A 64.68765255105646 0.02110486602236596 1 [Y{I|L}]KDEDT{I|L}YH{I|L} 11 2 + 82.661 0 0 5.8679 5.8679 93.263 0 0 0 22.56939794562402 64.14858783050833 22.56939794562402 82.66078461015597 0 2.031718309096375 1.6989700043360187 1.1549471895720984 0.2614393726401688 [Y{I|L}]KDEDT{I|L}YH{I|L} 5.8679 - 298 NaN NaN 194907.5 NaN 9233 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12031 55.638 NaN 415830 35 0 49045 0.261 + -1 FTIMCKSF 8 64 525.2428412313584 1048.4711295295167 2 525.2540893554688 MULTI HCD FTMS 0 0 0 12026 31432.583984375 0.6446289078928922 -1 0.026256561279296875 5 Carbamidomethyl (C),Oxidation (M) _FTIM(Oxidation (M))C(Carbamidomethyl (C))KSF_ REV__ENSG00000068878|ENST00000404125|PSME4 7.289230182591677 0.5311777711368266 1 VM{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 7 -1 27.324 0 0 2.6061 0 0 131.0714235742417 0 131.0714235742417 0 16.839475728029427 0 0 0 0.9247425010840047 0 0.9247425010840047 0 VM{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 2.6061 - 57 + NaN NaN 145763.8 NaN 9234 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12032 55.641 NaN 702290 35 0 233310 0.262 + 8411 GYQRRWFVL 9 65 408.89249200785105 1223.6556466237532 3 408.892578125 MULTI HCD FTMS 0 0 0 12026 128253.90625 0.5727027403982242 -3 0.082000732421875 6 Unmodified _GYQRRWFVL_ ENSG00000110048|ENST00000263847|OSBP;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2 11.494710602746466 0.2610445893512368 1 V{I|L} 2 7 28.271 0 0 2.3104 0 0 993.4930364037818 0 993.4930364037818 0 6.898422298141252 0 0 0 0.8807196863200843 0 0 0 + V{I|L} 2.3104 + + 44 NaN NaN 198438.4 NaN 9235 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12033 55.644 NaN 36965 35 0 5507.3 0.261 + 3549 EIQTGEHW 8 34 500.2323913574219 NaN 0 500.2323913574219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EIQTGEHW_ REV__ENSG00000172469|ENST00000358812|MANEA;REV__ENSG00000185090|ENST00000373045|MANEAL;REV__nc|ENSG00000185090|Q5VSG8-2|MANEAL 2.302733041254933 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.35003 0 0 701.4027444806657 146.94997583560783 848.3527203162735 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.35003 - 2 + NaN NaN 99978.5 NaN 9236 2795 12026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12035 55.649 NaN 808110 35 0 63623 0.327 + 34189 YPDIPKEEAF 10 95 604.7956431034917 1207.5767332737832 2 605.3186645507812 MULTI HCD FTMS 0 0 0 12034 53384.91015625 0.5009939570024333 -3 0.08535003662109375 1 Unmodified _YPDIPKEEAF_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 24.881564428377168 0.27837825820855233 1 Y{I|L}[DC]{I|L}Q{I|L}E 8 7 47.484 0 0 3.9322 0 0 212.0797596662125 0 212.0797596662125 0 22.78396303950444 0 0 0 1.110924374808178 0 0.3494850021680094 0 Y{I|L}[DC]{I|L}Q{I|L}E 3.9322 - 1212 NaN NaN 202412 NaN 9237 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12036 55.654 NaN 2138800 35 0 174240 0.261 + 29751 VDVDMSVQQL 10 108 567.279471362912 1132.5443897926239 2 567.2957763671875 MULTI HCD FTMS 0 0 0 12034 10947.0048828125 0.022209459040930475 13 -0.37419891357421875 2 Unmodified _VDVDMSVQQL_ REV__ENST00000440089.1_1_15:83379297-83380318:-|nuORF;REV__ENST00000559535.6_2_15:83379297-83380469:-|nuORF 19.256988751693697 0.33098864134661865 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{I|L}QQ 8 -1 41.2 0 0 3.6378 0 0 0 128.97942504750463 128.97942504750463 7.621476412290917 0 0 0 0 0.2614393726401688 1 0 1.0941876774005248 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{I|L}QQ 3.6378 - 1762 NaN NaN 412247.8 NaN 9238 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12037 55.657 NaN 360630 35 0 45050 0.261 -1 VMAPRTLLL 9 62 515.3098793642871 1028.605205795374 2 515.309814453125 MULTI HCD FTMS 0 0 0 12034 103820.84375 0.230341304822302 -7 0.19675064086914062 3 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 1 AD{I|L} 3 -1 33.188 0 0 3.2265 0 0 711.4644069518617 0 711.4644069518617 0 16.197887582883936 0 0 0 1 0 0 0 AD{I|L} 3.2265 - 47 NaN NaN 136217 NaN 9239 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12038 55.661 NaN 314030 35 0 37379 0.261 + 18295 MPEIFFQM 8 63 521.7402724543014 1041.4659919754026 2 521.7406005859375 MULTI HCD FTMS 0 0 0 12034 106946.546875 0.6821288392911243 -2 0.052478790283203125 4 Unmodified _MPEIFFQM_ ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A;UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant 15.847184025352803 0.47719562709667024 1 MPE 3 5 38.94 0 0 3.739 0 0 0 681.3079989056251 681.3079989056251 35.84121882396211 0 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + MPE 3.739 + + 18 + NaN NaN 144769.5 NaN 9240 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12039 55.664 NaN 442590 35 0 24481 0.261 -1 KMIDKYASED 10 91 608.2796944158495 1214.5448358984988 2 608.7828979492188 MULTI HCD FTMS 0 0 0 12034 124432.6015625 0.937157326595828 -1 0.02622222900390625 5 Oxidation (M) _KM(Oxidation (M))IDKYASED_ ENSG00000206418|ENST00000649141|RAB12;nc|ENSG00000206418|Q6IQ22|RAB12 13.614867670302875 0.3837631382804675 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[EP]D{I|L}{[VA]|[{I|L}G]}S 11 -1 + 46.726 0 0 3.8472 3.8472 87.052 0 0 0 16.01014019563705 3.5654732351381213 3.5654732351381213 16.01014019563705 0 0.3494850021680094 1.6989700043360187 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[EP]D{I|L}{[VA]|[{I|L}G]}S;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[YE]KD{I|L}{[VA]|[{I|L}G]}S;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QT][QP]D{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YQ][YE]KD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}DK[VP][HC]{M(Oxidation (M))|F};{[YC]|[HE]}S{[ET]|[MV]}KD{I|L}{[VA]|[{I|L}G]}S;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[YE]K{M(Oxidation (M))|F}[HN]S;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[YT]{[VA]|[{I|L}G]}[YN];{[ET]|[MV]}{I|L}C(Carbamidomethyl (C))K[YE]WS;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[PS]R[YE]WS 3.8472;2.529;2.4403;2.3934;2.2324;1.8847;1.1243;0.97849;0.4222;0.33305 -;-;-;-;-;-;-;-;-;- 413 NaN NaN 154503 NaN 9241 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12040 55.667 NaN 288960 35 0 17651 0.262 + 29122 TYIESASEL 9 79 506.7454824915593 1011.4764120499186 2 506.7363586425781 MULTI HCD FTMS 0 0 0 12034 24075.8046875 0.2819229621121047 6 -0.180633544921875 6 Unmodified _TYIESASEL_ ENSG00000158089|ENST00000349752|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14 19.256988751693697 0.19398022840297344 1 SA{M(Oxidation (M))|F} 3 7 25.534 0 0 2.5244 0 0 688.3612519930812 0 688.3612519930812 0 8.595756168365014 0 0 0 0.9247425010840047 0 0 0 SA{M(Oxidation (M))|F} 2.5244 - 275 + NaN NaN 126796.4 NaN 9242 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12041 55.671 NaN 251090 35 0 44843 0.261 + 7422 FVRGLRYF 8 61 529.2997643730326 1056.5849758128652 2 529.30029296875 MULTI HCD FTMS 0 0 0 12034 57163.125 0.6632280127742148 -1 0.02622222900390625 7 Unmodified _FVRGLRYF_ REV__ENST00000461819.5_1_1:32670894-32670972:+|nuORF 10.183394434864962 0.5188676124868831 1 D{I|L} 2 -1 19.949 0 0 1.888 0 0 810.4490214501702 0 810.4490214501702 0 0.4845500650402812 0 0 0 0.5 0 0 0 D{I|L} 1.888 - 133 NaN NaN 130761.1 NaN 9243 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12042 55.674 NaN 234320 35 0 14665 0.261 + 17161 LYLQSSVRI 9 68 539.8164806223592 1077.6184083115184 2 539.8170166015625 MULTI HCD FTMS 0 0 0 12034 36112.23046875 0.9945004514916005 1 -0.029560089111328125 8 Unmodified _LYLQSSVRI_ EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3 21.536976647645854 0.1742816388551942 1 [Y{I|L}]{I|L}QS 5 4 38.416 0 0 3.5649 0 0 0 470.2748201959594 470.2748201959594 27.447274948966935 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 + [Y{I|L}]{I|L}QS 3.5649 + + 93 + NaN NaN 118827.4 NaN 9244 2796 12034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12044 55.679 NaN 3088900 35 0 291330 0.327 + 24083 RYALQLQQI 9 122 566.8270743270659 1131.6395957209318 2 566.8275146484375 MULTI HCD FTMS 0 0 0 12043 1461646.5 0.23151711589790572 -4 0.11491012573242188 1 Unmodified _RYALQLQQI_ CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13 136.33342141710068 0.00022087650154924235 1 [YR]A{I|L}Q{I|L}QQ{I|L} 9 0 + 81.794 0 0 7.2279 7.2279 86.816 0 0 0 3.1683710377448477 11.237125054200234 3.1683710377448477 3.1683710377448477 0 2.0356668758921828 0 0 1.4604093769761874 + + [YR]A{I|L}Q{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}[AG]{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}Q[AG]{I|L};[YR]A{I|L}Q{I|L}[AG]Q{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}Q{I|L}Q;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{I|L}[AG]Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}[AG]{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{I|L}Q[AG]{I|L} 7.2279;6.9479;6.4142;6.4142;6.4142;6.2898;6.2349;6.1342;6.1342;6.1342 +;-;-;-;-;-;-;-;-;- + 7640 NaN NaN 553903.8 NaN 9245 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12045 55.683 NaN 1155400 35 0 189820 0.261 + 30434 VLPKLYVKL 9 81 536.8600607510731 1071.705568568946 2 536.8602294921875 MULTI HCD FTMS 0 0 0 12043 363668.15625 0.39750825783815735 3 -0.08864974975585938 2 Unmodified _VLPKLYVKL_ ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11 53.832793166522166 0.026208976789938845 1 {I|L}VPK{I|L}YVK{I|L} 9 2 + 66.459 0 0 6.2012 6.2012 85.583 0 0 0 4.771212547196619 7.346120605640223 4.771212547196619 4.771212547196619 0 1.7491348669726232 2 0 0.21346799108044048 {I|L}VPK{I|L}YVK{I|L};V{I|L}PK{I|L}YVK{I|L};{I|L}VPK{I|L}YKV{I|L};{I|L}V{I|L}[KP]YVK{I|L};V{I|L}PK{I|L}YKV{I|L};V{I|L}{I|L}[KP]YVK{I|L};{I|L}V{I|L}[KP]YKV{I|L};V{I|L}{I|L}[KP]YKV{I|L};[KP]{I|L}VY{I|L}VK{I|L};[KP]{I|L}VY{I|L}KV{I|L} 6.2012;5.756;5.5158;5.1038;5.0706;4.6586;4.4184;3.9732;2.3609;2.0852 -;+;-;-;-;-;-;-;-;- + 207 + NaN NaN 258736.9 NaN 9246 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12046 55.687 NaN 821540 35 0 58853 0.261 -1 FPDRIMNTF 9 109 578.7764311978499 1155.5383094624997 2 578.7767333984375 MULTI HCD FTMS 0 0 0 12043 569777 0.21353986597565106 10 -0.2888374328613281 3 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 114.18643581695662 0.002258955990713129 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 -1 + 76.218 0 0 6.5959 6.5959 84.482 0 0 0 0.7260521255899732 16.478174818886366 0.7260521255899732 0.7260521255899732 0 1.9291746928241125 1.3979400086720375 0.2614393726401688 0.7302046884880937 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}MGGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]YR{I|L}MNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR[NP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[DP]RY{I|L}MNT{M(Oxidation (M))|F} 6.5959;6.5331;5.991;5.799;5.7362;5.1941;5.0124;4.9115;4.5548;4.4242 -;-;+;-;-;-;-;-;-;- + 2247 NaN NaN 220803 NaN 9247 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12047 55.69 NaN 991800 35 0 67663 0.261 + 28392 TPFHEIMSL 9 106 545.7655293873025 1089.516505841405 2 545.7656860351562 MULTI HCD FTMS 0 0 0 12043 409064.375 0.8503873434878688 3 -0.08864974975585938 4 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 99.79894945604345 0.0042691968066200965 1 E{I|L}{M(Oxidation (M))|F}S{I|L} 5 4 48.008 0 0 4.4064 0 0 482.23051650215 0 482.23051650215 0 25.501356332304248 0 0 0 1.1549471895720984 0 1.2302046884880937 0 + E{I|L}{M(Oxidation (M))|F}S{I|L} 4.4064 + + 4519 NaN NaN 232473.9 NaN 9248 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12048 55.693 NaN 335750 35 0 31447 0.261 + -1 NTYDLHVSW 9 86 588.7693189683904 1175.5240850035807 2 588.769775390625 MULTI HCD FTMS 0 0 0 12043 151035.078125 0.36516881735297474 4 -0.12154388427734375 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NTYDLHVSW_ REV__ENST00000374431.7_1_9:113637406-113637454:-|nuORF 36.12702656103203 0.08312389501731911 1 SVSW 4 -1 58.418 0 0 4.9695 0 0 698.3024769513687 0 698.3024769513687 0 25.057809497117844 0 0 0 1.5994850021680094 0 1.1989700043360187 0 SVSW 4.9695 - 426 NaN NaN 144432.6 NaN 9249 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12049 55.697 NaN 338140 35 0 89477 0.262 -1 QMPVWEEMNVF 11 53 475.87734270727105 1424.6101987220131 3 475.87762451171875 MULTI HCD FTMS 0 0 0 12043 66329.6640625 0.6231364688578445 2 -0.0558319091796875 6 Oxidation (M) _QM(Oxidation (M))PVWEEMNVF_ ENST00000395878.7_1_16:23585535-23585652:+|nuORF 2.6312355333042263 0.4073809613003177 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.5436 0 0 1259.5310646661521 0 1259.5310646661521 0 17.385606273598313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.5436 + + 17 + NaN NaN 138075.1 NaN 9250 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12050 55.7 NaN 319910 35 0 45399 0.261 + 31385 VYAFPSFFEF 10 62 418.53305558507 1252.57733735541 3 418.5333251953125 MULTI HCD FTMS 0 0 0 12043 76308.4609375 0.822109018200225 1 -0.029582977294921875 7 Unmodified _VYAFPSFFEF_ REV__ENSG00000119912|ENST00000265986|IDE;REV__nc|ENSG00000119912|P14735-2|IDE 7.289230182591677 0.43672065049472153 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3564 0 0 1087.4984779577521 0 1087.4984779577521 0 1.5051499783199063 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3564 + + 23 + NaN NaN 131496 NaN 9251 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12051 55.703 NaN 264010 35 0 39565 0.261 + 18092 MNGEKQLMCW 10 60 620.2684313864854 1238.5223098397707 2 620.2678833007812 MULTI HCD FTMS 0 0 0 12043 81233.78125 0.9969183320604107 1 -0.029582977294921875 8 Unmodified _MNGEKQLMCW_ REV__ENSG00000109919|ENST00000302503|MTCH2;REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF 6.2057823575117 0.44245551207394906 1 W 1 -1 16.99 0 0 1.3718 0 0 1034.4324488551988 0 1034.4324488551988 0 1.0475750727131583 0 0 0 0 0 0 0 W 1.3718 + + 133 + NaN NaN 142261.7 NaN 9252 2797 12043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12053 55.708 NaN 2165000 35 0 209570 0.327 + 19985 NYIDKVRFL 9 119 584.329258802008 1166.6439646708159 2 584.3299560546875 MULTI HCD FTMS 0 0 0 12052 1118329.25 0.26192601105761193 6 -0.1705169677734375 1 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 140.63315402491853 1.8728231636916273E-05 1 [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L} 9 0 + 107.05 0 0 9.1763 9.1763 94.686 0 0 0 12.078343878162343 12.078343878162343 12.078343878162343 12.078343878162343 0 2.7302046884880937 2 0.3252574989159953 2.3469100130080562 + + [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L};[YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F};[Y{I|L}]NDKVR{M(Oxidation (M))|F}{I|L};{I|L}YNDKVR{I|L}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKVR{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKV[VG]{M(Oxidation (M))|F}{I|L};[YN]{I|L}[RV]S[VG]{M(Oxidation (M))|F}{I|L};[Y{I|L}]GGDKVR{M(Oxidation (M))|F}{I|L};[YN]{I|L}{I|L}[QT]R{I|L}{M(Oxidation (M))|F};[YN]VV{[SA]|[TG]}VR{M(Oxidation (M))|F}{I|L} 9.1763;8.141;6.9956;6.9344;6.8229;6.0336;6.0112;5.6279;5.6083;5.0862 +;-;-;-;-;-;-;-;-;- + 4135 NaN NaN 416202.4 NaN 9253 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12054 55.713 NaN 1213000 35 0 380670 0.261 + 18321 MPETTETVL 9 55 510.74948611524405 1019.4844192972881 2 510.7496337890625 MULTI HCD FTMS 0 0 0 12052 919064.8125 0.9119083834835172 -1 0.029582977294921875 2 Unmodified _MPETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 49.93300154707207 0.03166451819912738 1 TTETV{I|L} 6 3 68.136 0 0 6.6834 0 0 357.13670546699376 0 357.13670546699376 0 61.146387799684874 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + TTETV{I|L} 6.6834 + + 69 NaN NaN 287457.1 NaN 9254 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12055 55.716 NaN 1024700 35 0 97607 0.261 + 16584 LVGDDEHNPCS 11 96 593.2452042705696 1184.4758556079391 2 593.2454833984375 MULTI HCD FTMS 0 0 0 12052 183187 0.2795458926241362 17 -0.4713401794433594 3 Unmodified _LVGDDEHNPCS_ REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF 5.731851221503515 0.39378271418728467 1 [{I|L}V]{I|L}DE 5 -1 45.788 0 0 3.8657 0 0 0 612.148604307044 612.148604307044 23.68894395854837 0 0 0 0 1.1307196863200843 1.6989700043360187 0.3054621874040891 0 [{I|L}V]{I|L}DE 3.8657 - 448 + NaN NaN 255704.7 NaN 9255 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12056 55.72 NaN 452330 35 0 22939 0.261 + 16262 LQFYFFCTF 9 102 608.2796944158495 1214.5448358984988 2 608.2803344726562 MULTI HCD FTMS 0 0 0 12052 152063.765625 0.8419533778685936 2 -0.0590667724609375 4 Unmodified _LQFYFFCTF_ ENSG00000167825|ENST00000301532|OR5I1 20.453626601364224 0.18364154288633264 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[EP]D{I|L}{[VA]|[{I|L}G]}S 11 10 + 47.412 0 0 3.9037 3.9037 81.22 0 0 0 3.0483121601221086 3.565473235138114 3.0483121601221086 3.0483121601221086 0 0.5941876774005248 1.5228787452803376 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[EP]D{I|L}{[VA]|[{I|L}G]}S;[YT]VT[C(Carbamidomethyl (C))S]D{I|L}{[VA]|[{I|L}G]}S;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}T[HC]D{I|L}{[VA]|[{I|L}G]}S;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}DK[Y{M(Oxidation (M))|F}]WS;{[YC]|[HE]}S{[ET]|[MV]}KD{I|L}{[VA]|[{I|L}G]}S;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[YT]{[WN]|[YH]}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[YT][QA]T{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[YT][KA]T{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}D[YT]TQA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QT][QP]D{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.9037;3.6527;3.2079;2.8129;2.8104;2.7285;2.6256;2.6256;2.6187;2.3142 -;-;-;-;-;-;-;-;-;- 812 NaN NaN 149871.1 NaN 9256 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12057 55.723 NaN 407670 35 0 57808 0.261 + 25870 SMTRYFYL 8 68 548.760163014284 1095.5057730953679 2 548.7601928710938 MULTI HCD FTMS 0 0 0 12052 197726.15625 0.9851226670772878 -3 0.08536529541015625 5 Oxidation (M) _SM(Oxidation (M))TRYFYL_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 53.832793166522166 0.10403901041949734 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TRY{M(Oxidation (M))|F}Y{I|L} 8 0 + 61.271 0 0 5.5929 5.5929 88.025 0 0 0 3.979400086720375 44.281002178254155 3.979400086720375 9.262137858390815 0 1.8882104921644451 0 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TRY{M(Oxidation (M))|F}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T[VG]Y{M(Oxidation (M))|F}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TRY[Y{I|L}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TR{I|L}YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[SG]Y[Y{I|L}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T[VG]Y[Y{I|L}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[SG]{I|L}YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T[VG]{I|L}YY{M(Oxidation (M))|F} 5.5929;4.7474;2.4401;2.025;1.6674;1.6389;1.5946;1.2238;1.1795 +;-;-;-;-;-;-;-;- + 336 NaN NaN 152351.7 NaN 9257 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12058 55.726 NaN 489180 35 0 53706 0.261 + 8616 HDPSHSASVL 10 66 525.2538608919263 1048.4931688506524 2 525.7682495117188 MULTI HCD FTMS 0 0 0 12052 38053.75 0.5658318804807239 8 -0.2230224609375 6 Unmodified _HDPSHSASVL_ REV__ENSG00000233436|ENST00000422652|BTBD18 24.020572477871973 0.2864316864133941 1 SV{I|L} 3 -1 25.846 0 0 2.4651 0 0 731.299196036044 0 731.299196036044 0 3.327731244245342 0 0 0 0.7742275032520141 0 0.7302046884880937 0 SV{I|L} 2.4651 + + 38 NaN NaN 154045.3 NaN 9258 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12059 55.73 NaN 484410 35 0 130310 0.262 + 4929 FAMIDSEEWF 10 79 425.51791993562085 1273.5319304070626 3 425.51812744140625 MULTI HCD FTMS 0 0 0 12052 95927.15625 0.46938600442768946 -3 0.08536529541015625 7 Unmodified _FAMIDSEEWF_ REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant 15.847184025352803 0.36288280428275715 1 DYAE 4 -1 49.24 0 0 3.8664 0 0 777.3360348505971 0 777.3360348505971 0 30.010235578506062 0 0 0 1.305462187404089 0 0.4247425010840047 0 DYAE 3.8664 - 86 NaN NaN 158486.1 NaN 9259 2798 12052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12061 55.735 NaN 854140 35 0 154340 0.327 -1 CLAPAPGSWGE 11 88 572.7560370128239 NaN 0 572.7747192382812 PEAK HCD FTMS 0 0 0 12060 18669.3359375 0.47433159771845246 4 -0.12142181396484375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LAPAPGSWGE_ ENST00000463608.5_1_22:21830433-21838406:-|nuORF 29.081581746732265 0.18596664770792778 1 SV[YT]VVS 7 -1 26.286 0 0 2.2987 0 0 204.05177139383676 201.06707178287346 405.11884317671024 0 0 0 0 0 0 0 1.1549471895720984 0 SV[YT]VVS 2.2987 - 248 + NaN NaN 218899.7 NaN 9260 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12062 55.739 NaN 698940 35 0 217080 0.261 + 29343 TYPENWRAF 9 78 592.280077016477 1182.5456010997539 2 592.2801513671875 MULTI HCD FTMS 0 0 0 12060 279811.1875 0.8079191607851488 -3 0.08539199829101562 2 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 28.494509381512117 0.11816142465008336 1 EYTPNWRA{M(Oxidation (M))|F} 9 3 + 52.947 0 0 4.4774 4.4774 85.398 0 0 0 33.4831282005009 6.879617791072832 6.879617791072832 9.208187539523749 0 0.9916440611282626 1.6989700043360187 0 0 EYTPNWRA{M(Oxidation (M))|F};EYTPGGWRA{M(Oxidation (M))|F};[YT]PENWRA{M(Oxidation (M))|F};EY[PS]QWRA{M(Oxidation (M))|F};[YT]EPNWRA{M(Oxidation (M))|F};[YT][WK]NP{M(Oxidation (M))|F}NN;[YT]PDQWRA{M(Oxidation (M))|F};[YT]PEGGWRA{M(Oxidation (M))|F};[YT][WK]NA{[WT]|[RM]}N;EY[PS][AG]WRA{M(Oxidation (M))|F} 4.4774;3.6987;3.4236;3.2288;3.0633;3.0001;2.7424;2.6449;2.5817;2.4502 -;-;+;-;-;-;-;-;-;- + 1161 + NaN NaN 208971.7 NaN 9261 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12063 55.743 NaN 1191900 35 0 114290 0.261 + 4724 EYRDWWTK 8 111 592.280077016477 1182.5456010997539 2 593.2998046875 MULTI HCD FTMS 0 0 0 12060 94177.0625 0.5972451738222646 -1 0.026248931884765625 3 Unmodified _EYRDWWTK_ REV__ENSG00000164051|ENST00000395694|CCDC51;REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF 18.13498045792455 0.4603629008820478 1 EYY[RN]Y 6 -1 41.309 0 0 3.4932 0 0 0 291.1350547378968 291.1350547378968 16.849804622000754 0 0 0 0 0 1.5228787452803376 0 0.6694451763165201 EYY[RN]Y 3.4932 - 435 + NaN NaN 280375.2 NaN 9262 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12064 55.746 NaN 908180 35 0 136340 0.261 + 32987 YARSLVFTF 9 89 552.2957417279921 1102.576930522784 2 552.27978515625 MULTI HCD FTMS 0 0 0 12060 30454.39453125 0.7468094051531724 1 -0.032817840576171875 4 Unmodified _YARSLVFTF_ REV__ENSG00000178385|ENST00000427836|PLEKHM3;REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3;REV__nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3 16.942295170755138 0.21397866736869717 1 NAN{M(Oxidation (M))|F}VT{M(Oxidation (M))|F} 7 -1 54.28 0 0 4.923 0 0 291.1899198800091 0 291.1899198800091 0 2.3013463923755992 0 0 0 0 0 1.4049471895720984 0 NAN{M(Oxidation (M))|F}VT{M(Oxidation (M))|F} 4.923 - 2250 + NaN NaN 238554.5 NaN 9263 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12065 55.749 NaN 389320 35 0 62851 0.261 -1 YLFQLCSQGG 10 71 586.7745284295509 NaN 0 586.7921752929688 PEAK HCD FTMS 0 0 0 12060 29901.5625 0.5438115786797274 37 -1.0017051696777344 5 Carbamidomethyl (C) _YLFQLC(Carbamidomethyl (C))SQGG_ ENST00000355387.6_1_1:45116522-45116732:+|nuORF 10.073929032068715 0.33156240198919784 1 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 6 -1 42.013 0 0 3.5862 0 0 113.04796301855352 284.17273824296706 397.22070126152056 0 0 0 0 0 0 0 0.8494850021680094 0.3252574989159953 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.5862 - 120 + NaN NaN 140897 NaN 9264 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12066 55.753 NaN 113790 35 0 11959 0.261 + 34045 YNCFQSMNTF 10 45 627.7494987038417 1253.4844444744833 2 627.7490234375 MULTI HCD FTMS 0 0 0 12060 51370.34765625 0.6416226267399955 1 -0.032817840576171875 6 Unmodified _YNCFQSMNTF_ REV__ENSG00000166845|ENST00000620105|C18orf54;REV__nc|ENSG00000166845|Q8IYD9|LAS2 5.296884461304476 0.4472664531305844 1 ET{M(Oxidation (M))|F} 3 -1 35.445 0 0 2.8277 0 0 858.3146839826187 0 858.3146839826187 0 27.486512420283233 0 0 0 0.5 0 0.4247425010840047 0 ET{M(Oxidation (M))|F} 2.8277 - 9 NaN NaN 102709.8 NaN 9265 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12067 55.756 NaN 74348 35 0 6251.4 0.261 -1 MPDGQFKDISL 11 45 633.8053974265821 1265.596241919964 2 633.804931640625 MULTI HCD FTMS 0 0 0 12060 35344.40234375 0.08303198698705018 16 -0.44509124755859375 7 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 15.738622578938676 0.31995127722034494 1 {I|L}S{I|L} 3 -1 33.94 0 0 2.6818 0 0 934.3853626935562 0 934.3853626935562 0 23.48258770979733 0 0 0 0.5 0 0.4247425010840047 0 {I|L}S{I|L} 2.6818 + + 9 NaN NaN 96788.6 NaN 9266 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12068 55.759 NaN 219720 35 0 37960 0.261 -1 MAEHEDFLL 9 46 560.7528916585718 1119.4912303839435 2 560.7528686523438 MULTI HCD FTMS 0 0 0 12060 96633.625 0.9828913657108647 -1 0.026248931884765625 8 Oxidation (M) _M(Oxidation (M))AEHEDFLL_ ENSG00000011275|ENST00000389902|RNF216;MTHFD1L-RNF216|1|fusion;MTHFD1L-RNF216|2|fusion;MTHFD1L-RNF216|3|fusion;nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 35.445 0 0 3.1662 0 0 728.2448597638687 0 728.2448597638687 0 35.35666875892183 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.1662 + + 9 NaN NaN 109308.4 NaN 9267 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12069 55.763 NaN 177790 35 0 23936 0.261 + 8977 HPDYSFGEL 9 54 532.73796200721 1063.4613710812198 2 532.7379150390625 MULTI HCD FTMS 0 0 0 12060 45433.5 0.2561998464251556 11 -0.3149757385253906 9 Unmodified _HPDYSFGEL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F}W{I|L} 3 7 27.945 0 0 2.6278 0 0 599.2353382794937 0 599.2353382794937 0 11.747425010840043 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F}W{I|L} 2.6278 - 34 NaN NaN 104212.4 NaN 9268 2799 12060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12071 55.767 NaN 1142000 35 0 102160 0.327 + 18246 MPDVDLHL 8 89 478.2313836346678 954.4482143361356 2 478.231201171875 MULTI HCD FTMS 0 0 0 12070 582168.125 0.49700289012930615 -12 0.33455657958984375 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 84.078 0 0 8.809 8.809 95.452 0 0 0 16.153113369619305 65.54821698021334 16.153113369619305 17.6274290102549 0 2.305462187404089 1.154901959985743 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P][MT]H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[CA]|SS}[YK]N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YT][NS]N{I|L} 8.809;6.9622;5.2189;3.2202;2.3763;2.0073;1.8764 +;+;-;-;-;-;- + 666 NaN NaN 254781.1 NaN 9269 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12072 55.772 NaN 733980 35 0 250450 0.261 + 29344 TYPENWRAF 9 79 592.280077016477 1182.5456010997539 2 592.2803344726562 MULTI HCD FTMS 0 0 0 12070 277631.53125 0.8016256810139009 -2 0.0590667724609375 2 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 40.23920728925047 0.06424668180817725 1 RWNEPV{M(Oxidation (M))|F} 7 7 45.711 0 0 3.8655 0 0 236.11624343086095 0 236.11624343086095 0 30.673647750663804 0 0 0 1.1307196863200843 0 0 0.25 RWNEPV{M(Oxidation (M))|F} 3.8655 - 680 NaN NaN 199367.9 NaN 9270 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12073 55.775 NaN 363820 35 0 51001 0.261 + 34190 YPDIPKEEAF 10 77 604.7956431034917 1207.5767332737832 2 604.7955322265625 MULTI HCD FTMS 0 0 0 12070 106056.0546875 0.7698307256208952 -2 0.0590667724609375 3 Unmodified _YPDIPKEEAF_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 40.72490554402381 0.1391161235525472 1 YPD{I|L}P 5 5 66.999 0 0 5.5482 0 0 0 619.2835787408811 619.2835787408811 40.31682411056545 0 0 0 0 1.4247425010840047 2 0 0 + YPD{I|L}P 5.5482 + + 400 + NaN NaN 142824.1 NaN 9271 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12074 55.779 NaN 611880 35 0 93699 0.262 + 16029 LPSDTRLVL 9 82 507.3031231663787 1012.5916933995575 2 507.30291748046875 MULTI HCD FTMS 0 0 0 12070 182424.125 0.2586765125155348 -4 0.1182098388671875 4 Unmodified _LPSDTRLVL_ ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1 59.368380827593164 0.01846506874148156 1 {I|L}PSD 4 5 68.716 0 0 6.7862 0 0 0 597.3721289060625 597.3721289060625 44.5597718523608 0 0 0 0 1.3494850021680094 1.5228787452803376 0.805462187404089 0 + {I|L}PSD 6.7862 + + 363 + NaN NaN 188573.8 NaN 9272 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12075 55.782 NaN 377680 35 0 62890 0.261 -1 RYMVHLLEL 9 61 595.3232493733585 1188.631945813517 2 595.323486328125 MULTI HCD FTMS 0 0 0 12070 121293.328125 0.9426787102665789 -3 0.08864974975585938 5 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ ENSG00000137814|ENST00000260372|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 18.1463463914782 0.20357593197100715 1 H{I|L}{I|L}E{I|L} 5 -1 39.508 0 0 3.3238 0 0 565.2698841779312 0 565.2698841779312 0 32.54554718523508 0 0 0 0.3054621874040891 0 0 0 H{I|L}{I|L}E{I|L} 3.3238 + + 73 NaN NaN 139919.8 NaN 9273 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12076 55.785 NaN 148300 35 0 15246 0.263 + 16620 LVVHVEPAL 9 47 488.79497667222347 975.575400411247 2 488.79486083984375 MULTI HCD FTMS 0 0 0 12070 43039.13671875 0.07979601312053351 10 -0.28215789794921875 6 Unmodified _LVVHVEPAL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 7.289230182591677 0.29575926068275815 1 S 1 9 11.99 0 0 1.229 0 0 212.1475572489407 673.3683561087046 885.5159133576453 0 0 0 0 0 0.5 0 0 0 S 1.229 - 14 + NaN NaN 108493.9 NaN 9274 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12077 55.789 NaN 131700 35 0 15460 0.261 + -1 LLVVCYSKVGS 11 55 612.8355124374478 1223.6564719416956 2 612.8350830078125 MULTI HCD FTMS 0 0 0 12070 62151.46484375 0.7880508484482147 1 -0.032894134521484375 7 Carbamidomethyl (C) _LLVVC(Carbamidomethyl (C))YSKVGS_ REV__tr|U7T2Z1|U7T2Z1_FUSNU2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispFPE=3SV=1 4.897010918128616 0.3974440401582579 1 Y 1 -1 6.9897 0 0 0.57121 0 0 165.1859652051706 892.4040621393186 1057.5900273444893 0 0 0 0 0 0 0 0 0 Y 0.57121 + + 12 + NaN NaN 111017.9 NaN 9275 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12078 55.792 NaN 223470 35 0 23297 0.261 + 31653 VYKAFVMETF 10 55 625.8098110191298 1249.6050691050596 2 625.8099365234375 MULTI HCD FTMS 0 0 0 12070 108107.375 0.6314177145924529 -5 0.14443206787109375 8 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 100.0907132914201 0.00022792192901588228 1 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 104.53 0 0 8.3651 8.3651 97.357 0 0 0 73.2711470149615 10.012262311882765 10.012262311882765 68.61046901591578 0 3.1237125054200234 2 1.5669015600442577 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K[YV];[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}[YV];[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K[YV];[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}[YV] 8.3651;2.8745;2.3656;2.188;1.3945;0.88552;0.70798 +;-;-;-;-;-;- + 256 + NaN NaN 119974.5 NaN 9276 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12079 55.795 NaN 389600 35 0 30365 0.261 -1 FPAGYMYPSM 10 92 598.2429929396999 1194.4714329461997 2 599.7593994140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 14.838274106304384 0.3723198072575719 1 YSPY[TA]YS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 10 -1 + 33.561 0 0 2.8097 2.8097 81.205 0 0 0 9.74886953798432 1.0771841425634676 1.0771841425634676 4.776296993281406 0 0.7742275032520141 0 0.7614393726401688 0 YSPY[TA]YS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}AY[TA]YP[EC];YSVY[W{M(Oxidation (M))|F}]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YSV[W{M(Oxidation (M))|F}]YS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{[{M(Oxidation (M))|F}C]|[YS]}[TA]YP[EC];{[{M(Oxidation (M))|F}D]|MM}{I|L}{[QC]|[C(Carbamidomethyl (C))A]}Q{I|L}P[EC];{[YD]|[{M(Oxidation (M))|F}M]}PVTYYDC(Carbamidomethyl (C));[YV]{[{M(Oxidation (M))|F}C]|[YS]}[W{M(Oxidation (M))|F}]V[EC] 2.8097;2.4098;1.8078;1.4662;0.81391;0.45136;0.3834;0.1816 -;-;-;-;-;-;-;- 1321 + NaN NaN 144856.2 NaN 9277 2800 12070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12081 55.8 NaN 666420 35 0 85377 0.327 + 13052 KYLDEDTIYHL 11 85 470.569659295816 1408.687148487648 3 470.56982421875 MULTI HCD FTMS 0 0 0 12080 223946.046875 0.4413290616905337 2 -0.0557098388671875 1 Unmodified _KYLDEDTIYHL_ ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A 64.68765255105646 0.02110486602236596 1 [Y{I|L}]KDEDT{I|L}YH{I|L} 11 2 + 80.227 0 0 5.6952 5.6952 89.502 0 0 0 13.935078169319297 17.82516055786094 13.935078169319297 13.935078169319297 0 1.8182503180159344 1.3010299956639813 1.1861818737241734 0.3252574989159953 [Y{I|L}]KDEDT{I|L}YH{I|L};[YK]{I|L}DEDT{I|L}YH{I|L} 5.6952;4.706 -;+ + 576 NaN NaN 181421.5 NaN 9278 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12082 55.805 NaN 776270 35 0 114940 0.261 + 30499 VMAPRTLLL 9 77 515.3098793642871 1028.605205795374 2 515.3098754882812 MULTI HCD FTMS 0 0 0 12080 375097 0.8322060319889378 -2 0.06571197509765625 2 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 41.95555342248728 0.056367691549927025 1 [{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}{I|L} 9 0 + 52.611 0 0 5.1148 5.1148 81.992 0 0 0 7.147642715192504 34.81939364284848 7.147642715192504 0.9691001300805624 0 1.3494850021680094 0 0.3252574989159953 0 + + [{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}{I|L};[{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L} 5.1148;5.0206 +;- + 216 NaN NaN 222885.2 NaN 9279 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12083 55.808 NaN 1214600 35 0 121260 0.261 + 4725 EYRDWWTK 8 113 592.280077016477 1182.5456010997539 2 593.3010864257812 MULTI HCD FTMS 0 0 0 12080 122799.7109375 0.7787621821841283 1 -0.029529571533203125 3 Unmodified _EYRDWWTK_ REV__ENSG00000164051|ENST00000395694|CCDC51;REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF 18.13498045792455 0.4603629008820478 1 EYY[RN]Y 6 -1 44.486 0 0 3.7619 0 0 0 291.1349887157622 291.1349887157622 14.053038779909969 0 0 0 0 0 1.5228787452803376 0 0.6861818737241735 EYY[RN]Y 3.7619 - 1352 + NaN NaN 272667.6 NaN 9280 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12084 55.812 NaN 554020 35 0 95595 0.261 -1 CLAPAPGSWGE 11 80 572.7560370128239 NaN 0 572.7744140625 PEAK HCD FTMS 0 0 0 12080 16995.029296875 0.43179250867013474 6 -0.16729354858398438 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))LAPAPGSWGE_ ENST00000463608.5_1_22:21830433-21838406:-|nuORF 22.736283301280096 0.2352529050846619 1 S{I|L}KTC(Carbamidomethyl (C))VS 7 -1 25.042 0 0 2.1899 0 0 164.02915058639138 201.06702600650627 365.0961765928977 0 0 0 0 0 0 0 0.6861818737241735 0 S{I|L}KTC(Carbamidomethyl (C))VS 2.1899 - 360 + NaN NaN 178981.6 NaN 9281 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12085 55.815 NaN 516140 35 0 85977 0.261 + 35267 YVSMPYMTGF 10 73 598.260356658099 NaN 0 598.2437744140625 PEAK HCD FTMS 0 0 0 12080 13215.0205078125 0.8422940616386434 4 -0.10144805908203125 5 Unmodified _YVSMPYMTGF_ REV__ENSG00000152683|ENST00000282587|SLC30A6;REV__nc|ENSG00000152683|Q6NXT4-2|SLC30A6;REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6;REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6 15.847184025352803 0.31427456382696234 1 TSP[VS]{M(Oxidation (M))|F}YP 8 -1 33.977 0 0 2.8445 0 0 64.03050211177977 249.0551699274047 313.0856720391845 0 0 0 0 0 0 0 1.274227503252014 0 TSP[VS]{M(Oxidation (M))|F}YP 2.8445 - 241 + NaN NaN 163764 NaN 9282 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12086 55.818 NaN 232980 35 0 43851 0.261 + 13368 KYMYFTVVM 9 51 607.2851891934137 1212.5558254536272 2 607.2857666015625 MULTI HCD FTMS 0 0 0 12080 106488.9609375 0.7787174989425208 -3 0.09196090698242188 6 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 51.629811660486645 0.02929079705179888 1 Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 6 3 61.19 0 0 5.0464 0 0 438.194627830275 0 438.194627830275 0 46.753282428895275 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 5.0464 + + 99 NaN NaN 115255.8 NaN 9283 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12087 55.822 NaN 212400 35 0 14830 0.264 + 11764 KDSNLSFEEF 10 69 405.8558753740068 1214.5457967222205 3 405.85614013671875 MULTI HCD FTMS 0 0 0 12080 102415.078125 0.3556409041854469 5 -0.13106155395507812 7 Unmodified _KDSNLSFEEF_ ENSG00000107018|ENST00000223862|RLN1;ENST00000487557.2_1_9:5335253-5339295:-|nuORF 12.240655878213236 0.39661705172222156 1 {M(Oxidation (M))|F} 1 9 20.485 0 0 1.6866 0 0 1049.4666474075705 0 1049.4666474075705 0 9.515449934959719 0 0 0 0.3494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.6866 + + 134 + NaN NaN 110450.2 NaN 9284 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12088 55.825 NaN 289090 35 0 33122 0.261 + 6835 FPSTETATL 9 63 483.74265770099606 965.4707624687921 2 484.258056640625 MULTI HCD FTMS 0 0 0 12080 22470.41796875 0.3810643240104705 -9 0.2593269348144531 8 Unmodified _FPSTETATL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 30.636539890814138 0.10832830463492794 1 TAT{I|L} 4 5 36.414 0 0 3.7717 0 0 561.24418837715 0 561.24418837715 0 18.834420219276158 0 0 0 1.1989700043360187 0 0.4247425010840047 0 + TAT{I|L} 3.7717 + + 95 NaN NaN 122730.2 NaN 9285 2801 12080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12090 55.83 NaN 9385100 35 0 1059700 0.326 + 24084 RYALQLQQI 9 113 566.8270743270659 1131.6395957209318 2 566.8277587890625 MULTI HCD FTMS 0 0 0 12089 6064624 0.9606045356967096 1 -0.026180267333984375 1 Unmodified _RYALQLQQI_ CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13 136.33342141710068 0.00022087650154924235 1 [YR]A{I|L}Q{I|L}QQ{I|L} 9 0 + 94.796 0 0 8.3769 8.3769 92.084 0 0 0 16.61159286695316 36.32104342331591 16.61159286695316 9.208187539523749 0 2.079689690656103 1.0969100130080565 0 1.4436726795685342 + + [YR]A{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}[AG]Q{I|L};[YR]A{I|L}[AG]{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}Q[AG]{I|L};[YR]A{I|L}QQ{I|L}Q{I|L};[YR]A{I|L}Q{I|L}Q{I|L}Q;[YR]A{I|L}[AG]{I|L}[AG]Q{I|L};[YR]A{I|L}Q{I|L}[AG][AG]{I|L};[YR]A{I|L}[AG]{I|L}Q[AG]{I|L};[YR]A{I|L}[AG]Q{I|L}Q{I|L} 8.3769;7.5632;7.5632;7.5632;7.4695;7.3839;6.7534;6.7534;6.7534;6.6558 +;-;-;-;-;-;-;-;-;- + 6149 NaN NaN 682100.6 NaN 9286 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12091 55.834 NaN 638750 35 0 39127 0.261 + 34282 YPDRIMNTF 9 97 578.7764311978499 1155.5383094624997 2 578.7764282226562 MULTI HCD FTMS 0 0 0 12089 282901.5 0.10602524916644696 15 -0.40360260009765625 2 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 93.93812099017352 0.0044227730261779084 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 3 + 64.655 0 0 5.5952 5.5952 84.939 0 0 0 3.1234684152074976 41.80146352454713 3.1234684152074976 5.568109453757657 0 1.9361818737241734 0 0.5941876774005248 0.6989700043360187 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]YR{I|L}MNT{M(Oxidation (M))|F};[DP]RY{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]YR{I|L}MGGT{M(Oxidation (M))|F} 5.5952;5.1133;5.0848;5.0329;4.8249;4.7983;4.603;4.3165;4.2879;4.236 -;-;-;-;-;-;-;-;-;- 1286 NaN NaN 190965.1 NaN 9287 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12092 55.838 NaN 717680 35 0 54632 0.261 + 28393 TPFHEIMSL 9 98 545.7655293873025 1089.516505841405 2 545.7656860351562 MULTI HCD FTMS 0 0 0 12089 265375.53125 0.551678432144988 8 -0.21973419189453125 3 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 68.08070601005525 0.009709267492204555 1 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YT]{I|L}{M(Oxidation (M))|F}S 8 4 38.031 0 0 3.4906 0 0 0 128.08911261314248 128.08911261314248 17.266668591815417 0 0 0 0 0.8807196863200843 1.3979400086720375 1.2302046884880937 0 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YT]{I|L}{M(Oxidation (M))|F}S 3.4906 - 1339 NaN NaN 189758.2 NaN 9288 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12093 55.841 NaN 644990 35 0 123320 0.261 + 27879 TEDPEEPLI 9 87 521.7505237661846 1041.4864945991692 2 521.750732421875 MULTI HCD FTMS 0 0 0 12089 201571.484375 0.7620953616453909 -2 0.0624237060546875 4 Unmodified _TEDPEEPLI_ ENSG00000140481|ENST00000398814|CCDC33 28.486842064014134 0.11819662193267319 1 P{I|L}{I|L} 3 6 31.44 0 0 3.0188 0 0 700.2558884109908 0 700.2558884109908 0 12.989590413705049 0 0 0 0.8252574989159953 0 0 0 + P{I|L}{I|L} 3.0188 + + 116 NaN NaN 179545.5 NaN 9289 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12094 55.844 NaN 520070 35 0 133480 0.262 + -1 CIARHRIADL 10 53 408.89249200785105 1223.6556466237532 3 408.89263916015625 MULTI HCD FTMS 0 0 0 12089 165857.515625 0.7406172372553276 4 -0.101531982421875 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))IARHRIADL_ REV__ENSG00000139154|ENST00000266508|AEBP2;REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2;REV__nc|ENSG00000139154|Q6ZN18|AEBP2 5.783430956126388 0.4446910851847804 1 V{I|L} 2 -1 24.464 0 0 1.9993 0 0 993.4928067902265 0 993.4928067902265 0 6.9897000433601875 0 0 0 0.5 0 0 0 V{I|L} 1.9993 - 36 NaN NaN 166249.4 NaN 9290 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12095 55.848 NaN 225670 35 0 34952 0.261 -1 0 55 616.9244649085192 3079.585942209596 5 617.3265991210938 MULTI HCD FTMS 0 0 0 12089 69008.1171875 0.787666883564658 -2 0.0624237060546875 6 NaN NaN 1 AP 2 -1 20.969 0 0 0.68091 0 0 0 2908.471812605543 2908.471812605543 10 0 0 0 0 0 0 0 0 AP 0.68091 - 11 + NaN NaN 115120.5 NaN 9291 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12096 55.851 NaN 189630 35 0 21474 0.261 + 19308 NMAAPSLSRDT 11 60 581.7797194523127 1161.5448859714254 2 581.78076171875 MULTI HCD FTMS 0 0 0 12089 103209.78125 0.18746157356533744 9 -0.24918365478515625 7 Unmodified _NMAAPSLSRDT_ ENST00000545495.5_1_1:161094264-161102471:-|nuORF 4.189502756095605 0.4005469306127019 1 SVSW 4 9 27.423 0 0 2.3609 0 0 684.3192217641973 0 684.3192217641973 0 1.3919815197522212 0 0 0 0 0 0 0 SVSW 2.3609 - 55 + NaN NaN 116600.3 NaN 9292 2802 12089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12098 55.856 NaN 766590 35 0 226810 0.327 + 18322 MPETTETVL 9 55 510.74948611524405 1019.4844192972881 2 510.7496337890625 MULTI HCD FTMS 0 0 0 12097 551091.8125 0.5468006576390134 4 -0.11158370971679688 1 Unmodified _MPETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 49.93300154707207 0.03166451819912738 1 TTETV{I|L} 6 3 61.107 0 0 5.9939 0 0 357.13438613105626 0 357.13438613105626 0 54.11745028500839 0 0 0 1.774227503252014 0 0.8494850021680094 0 + TTETV{I|L} 5.9939 + + 55 NaN NaN 215917.5 NaN 9293 2803 12097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12099 55.86 NaN 789020 35 0 70481 0.261 + 19986 NYIDKVRFL 9 100 584.329258802008 1166.6439646708159 2 584.3301391601562 MULTI HCD FTMS 0 0 0 12097 319656.1875 0.07486728090297116 11 -0.291015625 2 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 114.20165948288297 0.0022564706844261533 1 [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L} 9 0 + 84.261 0 0 7.2226 7.2226 93.155 0 0 0 66.30265290781963 5.558933348155222 5.558933348155222 19.32975913172342 0 2.309894379144197 2 0.7059771852360797 0 + + [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L};[YN]{I|L}[RV]S[VG]{M(Oxidation (M))|F}{I|L};{I|L}YNDKVR{M(Oxidation (M))|F}{I|L};[YN]{I|L}[RV]{I|L}[YN]{I|L};[SG][{M(Oxidation (M))|F}V]DKVR{M(Oxidation (M))|F}{I|L};[YN]{I|L}[RV]{I|L}{I|L}[YN];[Y{I|L}]N[RV]S[VG]{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP][KS]SR{M(Oxidation (M))|F}{I|L};[Y{I|L}]N[RV]{I|L}[YN]{I|L};[Y{I|L}]N[RV]{I|L}{I|L}[YN] 7.2226;5.5657;5.191;3.7698;3.302;3.1669;2.6301;1.2263;0.83419;0.23127 +;-;-;-;-;-;-;-;-;- + 588 + NaN NaN 205779.6 NaN 9294 2803 12097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12100 55.864 NaN 658090 35 0 40385 0.261 + 16292 LQQQLLCR 8 99 501.28192535312724 NaN 0 501.292724609375 PEAK HCD FTMS 0 0 0 12097 9987.30078125 0.7008235416498491 -2 0.0557098388671875 3 Unmodified _LQQQLLCR_ ENST00000566581.5_1_15:34656349-34659376:-|nuORF 67.34385681178166 0.1492346295617585 1 {I|L}GAQ{I|L}A 6 5 31.134 0 0 3.1117 0 0 128.06216458313253 316.14072595767817 444.2028905408107 0 0 0 0 0 1.555462187404089 0 0 0.8737125054200234 {I|L}GAQ{I|L}A 3.1117 - 556 + NaN NaN 176865.2 NaN 9295 2803 12097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12101 55.867 NaN 425740 35 0 39426 0.261 + 22567 QSNRYTVQL 9 98 554.7898824226054 1107.5652119120107 2 554.789306640625 MULTI HCD FTMS 0 0 0 12097 56720.88671875 0.7929702125298554 -1 0.026180267333984375 4 Unmodified _QSNRYTVQL_ REV__ENSG00000007129|ENST00000401445|CEACAM21;REV__ENST00000407170.6_1_19:42071403-42085771:+|nuORF;REV__ENST00000482870.6_1_19:42071403-42092879:+|nuORF;REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21;REV__nc|ENSG00000007129|Q3KPI0-3|CEACAM21 27.628801355627647 0.12213550946336599 1 GQS{I|L}[QT]TNW 9 -1 42.112 0 0 3.8022 0 0 74.08006661515499 0 74.08006661515499 0 7.109426412488432 0 0 0 2.024227503252014 0 0.6989700043360187 0 GQS{I|L}[QT]TNW 3.8022 - 641 + NaN NaN 163539.2 NaN 9296 2803 12097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12102 55.871 NaN 286580 35 0 60686 0.261 + 25382 SEGELVVKF 9 57 504.27378924368367 NaN 0 504.2732849121094 PEAK HCD FTMS 0 0 0 12097 66022.703125 0.7724563727765468 2 -0.04573822021484375 5 Unmodified _SEGELVVKF_ ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D 39.94969957227396 0.07843668313024603 1 KV 2 8 21.836 0 0 2.1694 0 0 165.0769520146784 611.2677706354124 776.3447226500907 0 0 0 0 0 1.086696871556164 0 0 0 KV 2.1694 - 29 + NaN NaN 119581.2 NaN 9297 2803 12097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12103 55.874 NaN 70460 35 0 4980.6 0.261 + 14122 LADAVWSDL 9 45 495.2494989119065 988.4844448906131 2 495.75103759765625 MULTI HCD FTMS 0 0 0 12097 17435.748046875 0.7685159677645406 -1 0.026180267333984375 6 Unmodified _LADAVWSDL_ REV__ENST00000548520.1_1_12:104283206-104286955:-|nuORF;REV__nc|ENSG00000214198|Q6P2S7-2|TTC41P;REV__nc|ENSG00000214198|Q6P2S7|TTC41P 6.723162845929126 0.3000504726104499 1 {I|L}{I|L} 2 -1 20.969 0 0 2.1213 0 0 744.33012587715 0 744.33012587715 0 9.731975075880328 0 0 0 0 0 0 0 {I|L}{I|L} 2.1213 - 14 NaN NaN 91485.7 NaN 9298 2803 12097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12105 55.879 NaN 2217600 35 0 365120 0.327 + 13370 KYNANFVTF 9 109 552.2798695938172 1102.5451862544344 2 552.2799072265625 MULTI HCD FTMS 0 0 0 12104 1392177 0.9965174639492829 1 -0.022891998291015625 1 Unmodified _KYNANFVTF_ ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF;nc|ENSG00000173120|Q9Y2K7-3|KDM2A 149.91393105778798 8.917243180786556E-06 1 [YK]NAGG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F} 10 2 + 100.93 0 0 9.154 9.154 89.093 0 0 0 3.177418734074564 60.13653263639222 3.177418734074564 1.7609125905568135 0 3.1549471895720984 0 0.3054621874040891 1.9489700043360187 [YK]NAGG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]NAN{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]NQG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]GGAGG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]GGAN{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]GGQG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]REG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]A[RD]{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}EG[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[Y{I|L}]AEG[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F} 9.154;8.9942;8.4493;8.3227;8.1591;7.6141;7.3787;6.2241;5.5622;5.5015 -;+;-;-;-;-;-;-;-;- + 11993 NaN NaN 423371.6 NaN 9299 2804 12104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12106 55.883 NaN 1588700 35 0 255440 0.263 + 15436 LPDKWQHDLF 10 87 433.5555552271039 1297.6448362815117 3 433.5557861328125 MULTI HCD FTMS 0 0 0 12104 522788.375 0.7056719492284199 -2 0.0490264892578125 2 Unmodified _LPDKWQHDLF_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 55.466997841574724 0.05790726984578158 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HA][HA]D{I|L}{I|L}{M(Oxidation (M))|F} 11 6 + 43.873 0 0 3.381 3.381 80.664 0 0 0 4.460924861309948 2.8599531823899014 2.8599531823899014 3.0102999566398125 0 0.8494850021680094 0.958607314841775 0.7302046884880937 0.3252574989159953 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HA][HA]D{I|L}{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HA][HA]{I|L}D{I|L}{M(Oxidation (M))|F} 3.381;3.149 -;- 259 NaN NaN 330903.5 NaN 9300 2804 12104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12107 55.887 NaN 350280 35 0 52638 0.261 + 27357 SYSHIMALI 9 58 525.7679606452808 1049.5213683573616 2 525.767822265625 MULTI HCD FTMS 0 0 0 12104 119337.046875 0.6781255124738863 4 -0.1150054931640625 3 Oxidation (M) _SYSHIM(Oxidation (M))ALI_ ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 44.40701690623563 0.04511410083598184 1 A{I|L}{I|L} 3 6 32.435 0 0 3.0905 0 0 734.3088737349782 0 734.3088737349782 0 11.00833760139686 0 0 0 0.9247425010840047 0 0 0 + A{I|L}{I|L} 3.0905 + + 27 NaN NaN 141066.6 NaN 9301 2804 12104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12108 55.89 NaN 306350 35 0 31096 0.261 + 18556 MVEELEKAL 9 76 531.281245951436 1060.5479389696718 2 531.28125 MULTI HCD FTMS 0 0 0 12104 110426.359375 0.6095210619914755 -3 0.07855606079101562 4 Unmodified _MVEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 57.24910588100465 0.021429789259086996 1 {[ET]|[MV]}EE{I|L}EKA{I|L} 9 0 + 66.692 0 0 6.2885 6.2885 86.17 0 0 0 5.4804867875677274 5.4804867875677274 5.4804867875677274 5.7530272850235065 0 2.6549471895720984 0 0 0 + + {[ET]|[MV]}EE{I|L}EKA{I|L};{[ET]|[MV]}EE{I|L}EAK{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WR]EKA{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WR]EAK{I|L} 6.2885;5.746;2.2258;1.9798 +;-;-;- + 333 NaN NaN 151506.3 NaN 9302 2804 12104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12109 55.894 NaN 95929 35 0 15041 0.261 + 15278 LPAEEAPAL 9 47 455.74779470305714 909.4810364729143 2 455.7469787597656 MULTI HCD FTMS 0 0 0 12104 29681.923828125 0.6368974467851842 2 -0.0525054931640625 5 Unmodified _LPAEEAPAL_ ENST00000323078.7_1_7:150020415-150033884:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF;ENST00000493307.1_1_7:150020415-150021458:+|nuORF 28.486842064014134 0.11819662193267319 1 EA[PA]{I|L} 5 4 31.14 0 0 3.4239 0 0 410.2147389142594 0 410.2147389142594 0 16.535984316004217 0 0 0 1.1307196863200843 0 0 0 + EA[PA]{I|L} 3.4239 + + 27 NaN NaN 107927.8 NaN 9303 2804 12104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12110 55.897 NaN 98602 35 0 8915.5 0.261 -1 0 33 636.5027232925188 NaN 0 636.265625 PEAK HCD FTMS 0 0 0 12104 9265.9794921875 0.5200241082897813 -2 0.0490264892578125 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97309.3 NaN 9304 2804 12104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12112 55.902 NaN 1430800 35 0 130720 0.327 + 18247 MPDVDLHL 8 91 478.2313836346678 954.4482143361356 2 478.2312927246094 MULTI HCD FTMS 0 0 0 12111 797312.375 0.6806737395848684 -7 0.19340896606445312 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 81.067 0 0 8.4936 8.4936 94.503 0 0 0 13.142813412979493 63.108660387747975 13.142813412979493 14.929475895135838 0 2.305462187404089 0.8538719643217619 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[DP]{M(Oxidation (M))|F}VD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P][MT]H{I|L};[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L};[YG]GK{I|L}DCS{I|L};{I|L}[YT]QQCS{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};{I|L}M[NS][SG]{M(Oxidation (M))|F}S{I|L} 8.4936;6.9294;6.4444;5.0764;2.8615;1.585;0.86052;0.81992;0.69502;0.63533 +;+;-;-;-;-;-;-;-;- + 986 NaN NaN 305170.9 NaN 9305 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12113 55.906 NaN 750460 35 0 138640 0.261 + 31130 VTSEFCRFSP 10 76 586.7745284295509 NaN 0 586.792236328125 PEAK HCD FTMS 0 0 0 12111 21899.30859375 0.39827676491359637 42 -1.1389350891113281 2 Unmodified _VTSEFCRFSP_ REV__ENST00000215906.5_1_22:26839892-26840330:+|nuORF 17.11289562659939 0.30402175129113823 1 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 6 -1 48.008 0 0 4.0979 0 0 113.0484049862442 284.17277189692965 397.2211768831738 0 0 0 0 0 0 0 1.0994850021680094 0.6747425010840047 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 4.0979 - 473 + NaN NaN 202873 NaN 9306 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12114 55.91 NaN 474400 35 0 150940 0.264 + -1 CITDPVYIKL 10 72 407.8896283782468 1220.6470557349405 3 407.8902893066406 MULTI HCD FTMS 0 0 0 12111 111166.875 0.9102121958056201 2 -0.06584548950195312 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))ITDPVYIKL_ REV__ENSG00000176927|ENST00000394835|EFCAB5;REV__nc|ENSG00000176927|A4FU69-2|EFCAB5;REV__nc|ENSG00000176927|A4FU69-3|EFCAB5;REV__nc|ENSG00000176927|A4FU69-4|EFCAB5;REV__nc|ENSG00000176927|A4FU69-5|EFCAB5 8.444304893310646 0.4306066564229251 1 W{I|L}K{I|L} 4 -1 15.75 0 0 1.2903 0 0 662.2936754632593 0 662.2936754632593 0 2.65153777800478 0 0 0 0 0 0 0 W{I|L}K{I|L} 1.2903 - 33 + NaN NaN 168590.9 NaN 9307 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12115 55.913 NaN 148450 35 0 16912 0.261 + 25345 SDSAGDIDDLL 11 50 560.7528916585718 1119.4912303839435 2 560.7533569335938 MULTI HCD FTMS 0 0 0 12111 42428.8203125 0.4315570397204286 5 -0.14781570434570312 4 Unmodified _SDSAGDIDDLL_ REV__ENSG00000173068|ENST00000380672|BNC2;REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF 8.745405648335112 0.3805662881914433 1 {I|L}{I|L} 2 -1 25.217 0 0 2.2525 0 0 875.3116993003463 0 875.3116993003463 0 18.762874945799766 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.2525 + + 12 NaN NaN 104588.4 NaN 9308 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12116 55.916 NaN 126040 35 0 11553 0.263 + 12160 KKKKKKVKKI 10 55 419.3155844910851 NaN 0 419.3154602050781 PEAK HCD FTMS 0 0 0 12111 64384.4375 0.4290148971285619 346 -8.982440948486328 5 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 1 K 1 -1 6.5938 0 0 0.78815 0 0 560.5053622421327 144.9929598443969 705.4983220865296 0 0 0 0 0 0 0 0 0.3494850021680094 K 0.78815 + + 2 + NaN NaN 118375.4 NaN 9309 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12117 55.92 NaN 61094 35 0 4901.7 0.261 + 25734 SKRGSSWAIRL 11 36 630.8649887219686 NaN 0 630.7869262695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SKRGSSWAIRL_ ENST00000490638.5_1_9:35660467-35660770:-|nuORF 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87389.9 NaN 9310 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12118 55.923 NaN 67432 35 0 5070.5 0.263 + 430 ALDMFQKH 8 47 495.2494989119065 988.4844448906131 2 495.752197265625 MULTI HCD FTMS 0 0 0 12111 19907.0859375 0.8774451989957325 1 -0.029613494873046875 7 Unmodified _ALDMFQKH_ ENSG00000108839|ENST00000251535|ALOX12 4.3292370932331545 0.5355693454741696 1 D 1 7 6.9897 0 0 0.70711 0 0 184.12177806780375 686.3179415338499 870.4397196016537 0 0 0 0 0 0 0 0 0 + D 0.70711 + + 3 + NaN NaN 97847.5 NaN 9311 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12119 55.926 NaN 126400 35 0 16831 0.261 + 15206 LNKCGPMVL 9 55 487.7614526023694 NaN 0 487.7610778808594 PEAK HCD FTMS 0 0 0 12111 16749.3359375 0.34638489249605897 -5 0.13434219360351562 8 Unmodified _LNKCGPMVL_ ENSG00000117118|ENST00000375499|SDHB;ENST00000466613.2_1_1:17359444-17380514:-|nuORF;ENST00000475506.1_1_1:17354162-17371284:-|nuORF 4.3292370932331545 0.2742679634796037 1 V 1 8 6.9897 0 0 0.71799 0 0 131.09408103584389 740.3249605768186 871.4190416126626 0 0 0 0 0 0 0 0 0 + V 0.71799 + + 5 + NaN NaN 110332.3 NaN 9312 2805 12111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12121 55.931 NaN 1275200 35 0 222720 0.327 + 16030 LPSDTRLVL 9 99 507.3031231663787 1012.5916933995575 2 507.3031311035156 MULTI HCD FTMS 0 0 0 12120 592577.5625 0.8402720707168329 2 -0.0625 1 Unmodified _LPSDTRLVL_ ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1 76.82478488871298 0.006879825292024087 1 {I|L}PSD 4 5 72.735 0 0 7.1831 0 0 0 597.3731186933159 597.3731186933159 47.043650362227254 0 0 0 0 1.3252574989159953 1.6989700043360187 1.055462187404089 0 + {I|L}PSD 7.1831 + + 658 + NaN NaN 272626.7 NaN 9313 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12122 55.936 NaN 595170 35 0 205360 0.261 + 29345 TYPENWRAF 9 65 592.280077016477 1182.5456010997539 2 592.2802734375 MULTI HCD FTMS 0 0 0 12120 268593.5 0.7755295170688837 4 -0.11820220947265625 2 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 24.990960013464015 0.14443998892849796 1 [YT]PEC(Carbamidomethyl (C)) 5 5 39.565 0 0 3.3457 0 0 0 529.2764376275999 529.2764376275999 5.848848985623647 0 0 0 0 0.4247425010840047 2 0 0 [YT]PEC(Carbamidomethyl (C)) 3.3457 - 166 + NaN NaN 180269.8 NaN 9314 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12123 55.939 NaN 236540 35 0 20495 0.261 + 31654 VYKAFVMETF 10 61 625.8098110191298 1249.6050691050596 2 625.81005859375 MULTI HCD FTMS 0 0 0 12120 148952.1875 0.8699781103259285 1 -0.03623199462890625 3 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 87.25819977447905 0.0012128544035916314 1 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 99.703 0 0 7.9788 7.9788 96.809 0 0 0 2.129843661361406 2.129843661361406 2.129843661361406 75.3713816064726 0 3.579689690656103 1.5228787452803376 1.2302046884880937 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]TVK{[MS]|[{M(Oxidation (M))|F}A]}[YV]{M(Oxidation (M))|F} 7.9788;1.9471;0.32832;0.27475 +;-;-;- + 409 + NaN NaN 120271.7 NaN 9315 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12124 55.943 NaN 279450 35 0 44720 0.261 -1 RYMVHLLEL 9 60 595.3232493733585 1188.631945813517 2 595.3236083984375 MULTI HCD FTMS 0 0 0 12120 107516.5234375 0.8356068648883808 3 -0.09203338623046875 4 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ ENSG00000137814|ENST00000260372|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 22.736283301280096 0.1639198954644489 1 H{I|L}{I|L}E{I|L} 5 -1 38.201 0 0 3.2139 0 0 565.2704334943375 0 565.2704334943375 0 29.24865027867405 0 0 0 0.3252574989159953 0 0 0 H{I|L}{I|L}E{I|L} 3.2139 + + 61 NaN NaN 135686.8 NaN 9316 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12125 55.946 NaN 212680 35 0 21220 0.261 + 34191 YPDIPKEEAF 10 70 604.7956431034917 1207.5767332737832 2 604.7962646484375 MULTI HCD FTMS 0 0 0 12120 61294.76171875 0.44492123556493846 4 -0.11820220947265625 5 Unmodified _YPDIPKEEAF_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 21.590151480376914 0.30916502439568466 1 [DP]Y{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ{I|L}E 10 7 + 46.348 0 0 3.8381 3.8381 81.939 0 0 0 4.771212547196626 7.269987279362624 4.771212547196626 4.771212547196626 0 0.9247425010840047 0 0.4247425010840047 0 [DP]Y{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ{I|L}E;[DP]{I|L}Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ{I|L}E;[DP]Y{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[AG]{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[AG]{I|L}E;[DP]{I|L}Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[AG]{I|L}E;[DP]Y{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TP]NE;[DP]{I|L}H{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WH]{M(Oxidation (M))|F};{M(Oxidation (M))|F}N[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{[QN]|[E{I|L}]|[KN]};[DP]H{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WH]{M(Oxidation (M))|F} 3.8381;3.443;3.2371;3.0792;2.6841;2.4782;2.3334;1.9748;1.9383;1.829 -;-;-;-;-;-;-;-;-;- 370 NaN NaN 111173 NaN 9317 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12126 55.949 NaN 383630 35 0 30374 0.262 + 27589 TAELDPHIL 9 73 504.77270072723513 NaN 0 504.7721252441406 PEAK HCD FTMS 0 0 0 12120 41615.4921875 0.3426252648024872 -3 0.07535171508789062 6 Unmodified _TAELDPHIL_ ENSG00000136937|ENST00000375147|NCBP1 43.85829265575387 0.06590164363483184 1 E{I|L}D 3 6 33.812 0 0 3.356 0 0 172.0861942621279 475.26773974730304 647.353934009431 0 0 0 0 0 1.7614393726401687 0 0 0 + E{I|L}D 3.356 + + 56 + NaN NaN 149160.5 NaN 9318 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12127 55.953 NaN 281530 35 0 24698 0.262 -1 NPLHLDYVM 9 80 559.2707309608332 1116.5269089884664 2 559.2703247070312 MULTI HCD FTMS 0 0 0 12120 25595.794921875 0.17278824456633352 20 -0.5394477844238281 7 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 13.90604991867851 0.24021115267848145 1 MYHG[HA]RV{M(Oxidation (M))|F} 9 -1 + 53.326 0 0 4.776 4.776 89.783 0 0 0 38.253800256993955 14.973024840566467 14.973024840566467 30.256987880070906 0 0.7742275032520141 0 0 0 MYHG[HA]RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][DV]YV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]G[DV]YV{M(Oxidation (M))|F};[YT][DG]{I|L}{M(Oxidation (M))|F}RV{M(Oxidation (M))|F};[YT]R{M(Oxidation (M))|F}{I|L}[DG]V{M(Oxidation (M))|F};[YT]R[HA][WH]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A][RD]YV{M(Oxidation (M))|F};[Y{I|L}]AA[RD]YV{M(Oxidation (M))|F};[Y{I|L}][YQ]{I|L}[RD]{M(Oxidation (M))|F};[Y{I|L}][YQ]{[RE]|[WV]}V{M(Oxidation (M))|F} 4.776;2.0661;1.8942;1.6594;1.6594;1.6459;1.3092;1.1625;1.1562;1.0443 -;-;-;-;-;-;-;-;-;- 507 + NaN NaN 128048.1 NaN 9319 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12128 55.956 NaN 77447 35 0 6215 0.262 -1 0 44 455.2484232870236 454.24114682042364 1 455.24884033203125 MULTI HCD FTMS 0 0 0 12120 44822.70703125 0.2210354609470045 -12 0.3346443176269531 8 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 3.7402 0 0 289.1620127645627 0 289.1620127645627 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.7402 - 2 + NaN NaN 93885.2 NaN 9320 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12129 55.959 NaN 140700 35 0 8652.3 0.261 + 16027 LPSAPERLAL 10 65 533.8163955359913 1065.6182381387825 2 533.81640625 MULTI HCD FTMS 0 0 0 12120 9127.6572265625 0.1941436735148303 1 -0.03623199462890625 9 Unmodified _LPSAPERLAL_ ENSG00000269858|ENST00000303961|EGLN2;nc|ENSG00000269858|Q96KS0-2|EGLN2 12.872603262515298 0.3907060291096084 1 {I|L}PSA 4 6 47.18 0 0 4.4275 0 0 0 694.3904382790573 694.3904382790573 29.221675119240516 0 0 0 0 0.5 1.3010299956639813 0.3252574989159953 0 + {I|L}PSA 4.4275 + + 31 + NaN NaN 108596.3 NaN 9321 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12130 55.963 NaN 84774 35 0 6917.9 0.261 -1 MPDGQFKDISL 11 47 633.8069866554331 1265.599420377666 2 634.3073120117188 MULTI HCD FTMS 0 0 0 12120 18241.66796875 0.05338994658109398 -22 0.6200790405273438 10 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 7.945399516374404 0.3840748433199446 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 -1 7.4473 0 0 0.58844 0 0 0 903.4605806940061 903.4605806940061 7.447274948966937 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 0.58844 + + 7 + NaN NaN 93176.7 NaN 9322 2806 12120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12132 55.968 NaN 1802000 35 0 245890 0.327 + 1964 DAIRDAEIL 9 94 508.2746003872821 1014.5346478413642 2 508.27471923828125 MULTI HCD FTMS 0 0 0 12131 993588.875 0.7533539877417486 -2 0.06584548950195312 1 Unmodified _DAIRDAEIL_ ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 71.70789743142352 0.008535567138151097 1 {[DA]|[EG]}{I|L}REGE{I|L}{I|L} 9 2 + 90.261 0 0 8.8968 8.8968 89.071 0 0 0 19.730749808046326 16.478174818886373 16.478174818886373 2.430380486862944 0 2.2059771852360797 1.5228787452803376 0.6139829889124311 0 {[DA]|[EG]}{I|L}REGE{I|L}{I|L};{[DA]|[EG]}{I|L}RDAE{I|L}{I|L};{[DA]|[EG]}{I|L}READ{I|L}{I|L};{[DA]|[EG]}{I|L}ERGE{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}AREGE{I|L}{I|L};{[DA]|[EG]}{I|L}ERAD{I|L}{I|L};{[DA]|[EG]}{I|L}[VG]EGKN{I|L};{NN|[MP]|[D{I|L}]|[EV]}ARDAE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}GREGE{I|L}{I|L};{[DA]|[EG]}{I|L}REA{I|L}D{I|L} 8.8968;8.6572;8.1072;7.6885;6.952;6.899;6.7415;6.7124;6.6553;6.6409 -;+;-;-;-;-;-;-;-;- + 3272 NaN NaN 358226.1 NaN 9323 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12133 55.972 NaN 639340 35 0 95105 0.261 -1 VMAPRTLLL 9 68 515.3098793642871 1028.605205795374 2 515.3099365234375 MULTI HCD FTMS 0 0 0 12131 281179.3125 0.6238362875016397 4 -0.111419677734375 2 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 21.536976647645854 0.1742816388551942 1 [{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L} 9 -1 + 39.359 0 0 3.8264 3.8264 88.991 0 0 0 6.17091242345041 22.368800006334347 6.17091242345041 39.358500049694534 0 1.3494850021680094 0 0 0 [{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L} 3.8264 - 60 NaN NaN 185639.2 NaN 9324 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12134 55.976 NaN 493170 35 0 80764 0.261 + 5697 FPAGYMYPSM 10 84 598.2429929396999 1194.4714329461997 2 598.24365234375 MULTI HCD FTMS 0 0 0 12131 174690 0.629410242035738 11 -0.28533172607421875 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 50.477 0 0 4.2259 0 0 535.2435691651681 0 535.2435691651681 0 42.6856908032363 0 0 0 1.774227503252014 0 0.3807196863200844 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.2259 + + 586 NaN NaN 170551 NaN 9325 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12135 55.979 NaN 270510 35 0 31384 0.261 -1 KYMYFTVVM 9 67 607.2851891934137 1212.5558254536272 2 607.2855224609375 MULTI HCD FTMS 0 0 0 12131 69166.4609375 0.5057907692757702 3 -0.08197021484375 4 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 32.78568957990786 0.09846250359632436 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{M(Oxidation (M))|F}YTVV{M(Oxidation (M))|F} 9 -1 + 60.098 0 0 4.9563 4.9563 88.834 0 0 0 5.6424927368725974 33.102802969692746 5.6424927368725974 16.95046257204389 0 2.274227503252014 0 0.3252574989159953 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{M(Oxidation (M))|F}YTVV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[Q{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]TVV{M(Oxidation (M))|F} 4.9563;3.5584 -;- 229 NaN NaN 123580.2 NaN 9326 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12136 55.982 NaN 567950 35 0 66281 0.264 + 24549 RYLLFARQF 9 63 405.2327054695651 1212.6762870088953 3 405.5675354003906 MULTI HCD FTMS 0 0 0 12131 97461.15625 0.6229074849394041 -1 0.03623199462890625 5 Unmodified _RYLLFARQF_ ENSG00000076003|ENST00000264156|MCM6 49.52724829834842 0.03223213920720493 1 [YR]{I|L}{I|L}{M(Oxidation (M))|F}ARQ{M(Oxidation (M))|F} 9 0 + 75.411 0 0 6.2186 6.2186 88.31 0 0 0 7.147642715192504 61.43175948177209 7.147642715192504 9.208187539523749 0 2.079689690656103 0 0 0 + + [YR]{I|L}{I|L}{M(Oxidation (M))|F}ARQ{M(Oxidation (M))|F};[YR]{I|L}{I|L}{M(Oxidation (M))|F}AR[AG]{M(Oxidation (M))|F} 6.2186;5.4592 +;- + 180 NaN NaN 173721.3 NaN 9327 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12137 55.986 NaN 206360 35 0 12570 0.261 -1 0 53 539.8704869761253 2694.3160525476264 5 540.2724609375 MULTI HCD FTMS 0 0 0 12131 7400.96337890625 0.11534437722783253 1 -0.02626800537109375 6 NaN NaN 1 D 1 -1 6.9897 0 0 0.25942 0 0 1859.8943739361014 716.3729660103824 2576.267339946484 0 0 0 0 0 0 0 0 0 D 0.25942 - 25 + NaN NaN 127516.9 NaN 9328 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12138 55.989 NaN 355080 35 0 22487 0.261 + 9762 HYILHNSFF 9 87 589.2930832030781 1176.5716134729562 2 589.2935791015625 MULTI HCD FTMS 0 0 0 12131 49244.04296875 0.03284114647722758 68 -1.8495597839355469 7 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 31.26834338654808 0.10542797264966089 1 NS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 25.143 0 0 2.137 0 0 663.3495350568375 0 663.3495350568375 0 6.709120513295954 0 0 0 0.28872548999643577 0 0.5 0 + NS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.137 + + 539 NaN NaN 135741.9 NaN 9329 2807 12131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12140 55.994 NaN 4550300 35 0 500580 0.327 + 24085 RYALQLQQI 9 135 566.8270743270659 1131.6395957209318 2 566.827392578125 MULTI HCD FTMS 0 0 0 12139 1142594.625 0.1809809774254234 7 -0.18581771850585938 1 Unmodified _RYALQLQQI_ CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13 111.28704002717404 0.0027322905094575235 1 QQ{I|L}Q{I|L}VSW 8 6 76.636 0 0 6.7721 0 0 131.09632267081662 0 131.09632267081662 0 25.828956512079344 0 0 0 1.4916440611282624 0 0.3252574989159953 0.9361818737241735 QQ{I|L}Q{I|L}VSW 6.7721 - 10675 + NaN NaN 781039.5 NaN 9330 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12141 55.998 NaN 493460 35 0 28946 0.261 + 34283 YPDRIMNTF 9 86 578.7764311978499 1155.5383094624997 2 578.7764282226562 MULTI HCD FTMS 0 0 0 12139 246764.046875 0.09248172793443185 21 -0.5618476867675781 2 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 86.33184430468982 0.004622086694044132 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[R{I|L}]MNT{M(Oxidation (M))|F} 9 0 + 67.871 0 0 5.8735 5.8735 85.257 0 0 0 5.078927238496142 12.385606273598313 5.078927238496142 5.078927238496142 0 2.079689690656103 1.2218487496163564 0 0.7742275032520141 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[R{I|L}]MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[R{I|L}]MGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[WN]|[YH]}[KS]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{[QD]|[EN]|[WG]|[KD]|[RS]}[KS]NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR[NP]YT{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[W{I|L}][KS]NT{M(Oxidation (M))|F} 5.8735;5.434;5.3586;5.0766;4.8553;4.639;4.6371;4.5617;3.502;3.2094 +;-;-;-;-;-;-;-;-;- + 731 NaN NaN 158784.3 NaN 9331 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12142 56.002 NaN 270070 35 0 66690 0.261 + 18323 MPETTETVL 9 61 510.74948611524405 1019.4844192972881 2 510.74957275390625 MULTI HCD FTMS 0 0 0 12139 138657.828125 0.13757814920457975 9 -0.23957061767578125 3 Unmodified _MPETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 26.88365393820708 0.12808753336095696 1 EETV{I|L} 5 4 47.25 0 0 4.6347 0 0 430.1971607892594 0 430.1971607892594 0 28.297669878531476 0 0 0 1 0 0.7742275032520141 0 EETV{I|L} 4.6347 - 101 NaN NaN 122954.1 NaN 9332 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12143 56.005 NaN 589710 35 0 46947 0.261 + -1 YIYERMKA 8 99 545.2736577724753 1088.5327626117505 2 545.7656860351562 MULTI HCD FTMS 0 0 0 12139 8556.716796875 0.5835568438713623 3 -0.08515167236328125 4 Oxidation (M) _YIYERM(Oxidation (M))KA_ REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1 28.486842064014134 0.3788298654084067 1 Y{M(Oxidation (M))|F}[VS]RATV{M(Oxidation (M))|F} 9 -1 + 36.848 0 0 3.3851 3.3851 79.477 0 0 0 1.175500476251628 9.592079654520887 1.175500476251628 0.45757490560675507 0 1.1382104921644451 0 0.6694451763165201 0 Y{M(Oxidation (M))|F}[VS]RATV{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}K{[RE]|[WV]}TV{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}[VS]RA{M(Oxidation (M))|F}{[TV]|[{I|L}S]};Y{M(Oxidation (M))|F}K{[RE]|[WV]}{M(Oxidation (M))|F}{[TV]|[{I|L}S]};[YT]TM{[NV]|[RG]}YVV;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}RKEY;Y{M(Oxidation (M))|F}K[HT]{[HG]|PP}{[TV]|[{I|L}S]};[YT]TM{[NV]|[RG]}VVY;[YT]TM{[NV]|[RG]}[{I|L}T]{M(Oxidation (M))|F} 3.3851;3.343;2.4097;2.3677;1.1173;0.83394;0.80144;0.33689;0.33689 -;-;-;-;-;-;-;-;- 1638 + NaN NaN 173634.7 NaN 9333 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12144 56.009 NaN 657860 35 0 57353 0.261 + 27880 TEDPEEPLI 9 87 521.7505237661846 1041.4864945991692 2 521.7505493164062 MULTI HCD FTMS 0 0 0 12139 153300.359375 0.579593354588348 4 -0.1178131103515625 5 Unmodified _TEDPEEPLI_ ENSG00000140481|ENST00000398814|CCDC33 14.838274106304384 0.23215694253501695 1 EP{I|L}{I|L} 4 5 29.967 0 0 2.8773 0 0 571.2125721662125 0 571.2125721662125 0 11.516500040903455 0 0 0 0.7059771852360797 0 0 0 + EP{I|L}{I|L} 2.8773 + + 264 NaN NaN 187206 NaN 9334 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12145 56.012 NaN 1719100 35 0 148650 0.261 + 1860 CVSSFFAISW 10 117 573.7657539071055 1145.5169548810109 2 573.7649536132812 MULTI HCD FTMS 0 0 0 12139 305939.3125 0.04460135463397585 -6 0.164031982421875 6 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 43.85829265575387 0.11192494793849486 1 HSVSTYVSW 9 7 86.18 0 0 7.5232 0 0 81.0350490149868 0 81.0350490149868 0 59.30559162391269 0 0 0 3.1791746928241125 0 1.5986198691406326 0 HSVSTYVSW 7.5232 - 9239 + NaN NaN 349978.6 NaN 9335 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12146 56.015 NaN 397630 35 0 82179 0.261 + 30655 VPDPNVIKL 9 58 497.8001966216024 993.5858403100049 2 497.8004150390625 MULTI HCD FTMS 0 0 0 12139 127285.140625 0.15796351041976597 -8 0.2264556884765625 7 Unmodified _VPDPNVIKL_ ENSG00000157349|ENST00000288071|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B 43.981846655682396 0.04706587046877104 1 [VP]D[NP]V{I|L}K{I|L} 9 0 + 62.686 0 0 6.309 6.309 86.942 0 0 0 7.530382041820758 7.530382041820758 7.530382041820758 7.530382041820758 0 1.9247425010840047 1.3979400086720375 0 0.3807196863200844 + + [VP]D[NP]V{I|L}K{I|L};VPD[PA]AA{I|L}K{I|L};[VP]N[DP]V{I|L}K{I|L};[VP]D[NP]{I|L}VK{I|L};[VP]N{I|L}V[DP]K{I|L};[DP]V[NP]V{I|L}K{I|L};[VP]N{I|L}[DP]VK{I|L};[VP]N[DP]{I|L}VK{I|L};[VP]GG[DP]V{I|L}K{I|L};[DP]V[NP]{I|L}VK{I|L} 6.309;5.5511;5.5028;5.3256;4.828;4.7018;4.5868;4.5194;4.1929;3.7184 +;-;-;-;-;-;-;-;-;- + 235 NaN NaN 150536.3 NaN 9336 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12147 56.019 NaN 698400 35 0 71035 0.261 + 4734 EYSKYLQQAF 10 82 638.8141371141248 1275.6137212950496 2 638.8141479492188 MULTI HCD FTMS 0 0 0 12139 261920.78125 0.2870749131133655 -4 0.1150054931640625 8 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 129.38794658156127 2.0887486395044015E-05 1 [YE]SKY{I|L}QQA{M(Oxidation (M))|F} 10 0 + 115.7 0 0 9.0705 9.0705 89.927 0 0 0 3.6928031367991565 16.53212513775344 3.6928031367991565 3.6928031367991565 0 3.0356668758921828 1.3979400086720375 3.305462187404089 0 + + [YE]SKY{I|L}QQA{M(Oxidation (M))|F};[YT]DKY{I|L}QQA{M(Oxidation (M))|F};[YE]SKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YE]SKY{I|L}[AG]QA{M(Oxidation (M))|F};[YT]DKY{I|L}[AG]QA{M(Oxidation (M))|F};[YT]DKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YE]SKY{I|L}[AG][AG]A{M(Oxidation (M))|F};[YE]S{I|L}Q[YK]QA{M(Oxidation (M))|F};[YT]DKY{I|L}[AG][AG]A{M(Oxidation (M))|F};[YE]S{I|L}[YK]QQA{M(Oxidation (M))|F} 9.0705;8.781;8.352;8.352;8.0625;8.0625;7.6364;7.4586;7.3469;7.2816 +;-;-;-;-;-;-;-;-;- + 4511 NaN NaN 194553.5 NaN 9337 2808 12139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12149 56.023 NaN 8777500 35 0 1287400 0.327 -1 DPRNATSVCI 10 142 566.7738872279571 1131.533221522714 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12148 5042284 0.1175478247230788 -5 0.14453887939453125 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 36.506200033944 0.17572556831573002 1 PAP{M(Oxidation (M))|F}STSVSW 10 -1 91.141 0 0 8.0547 0 0 54.03362057912074 0 54.03362057912074 0 62.870279504737745 0 0 0 3.138210492164445 0 1.9940840204505514 0 PAP{M(Oxidation (M))|F}STSVSW 8.0547 - 15190 + NaN NaN 1127145.1 NaN 9338 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12150 56.028 NaN 1361300 35 0 149990 0.261 + 6960 FPVRDGVVL 9 119 501.2925655325258 1000.5705781318517 2 501.292724609375 MULTI HCD FTMS 0 0 0 12148 696238.375 0.757264370096096 -3 0.09203338623046875 2 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 55.50274090549119 0.023872834264864425 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L} 9 0 + 49.113 0 0 4.9085 4.9085 82.121 0 0 0 10.876364635760751 13.857055522550255 10.876364635760751 1.9382002601611248 0 1.305462187404089 1.5228787452803376 0.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QN]|[E{I|L}]|[KN]}{[QG]|[NA]}V{I|L};[Q{I|L}]E[RP]{M(Oxidation (M))|F}V{I|L};[VP]{[CA]|SS}[RP]{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GV{I|L}V;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]{I|L}V;[VP]{M(Oxidation (M))|F}[RD]GVV{I|L};[Q{I|L}]E[R{M(Oxidation (M))|F}]PV{I|L};[VP]{M(Oxidation (M))|F}[RV][DG]V{I|L} 4.9085;4.7148;4.2379;3.8215;3.7581;3.4806;3.2869;3.1997;3.0438;3.006 +;-;-;-;-;-;-;-;-;- + 917 NaN NaN 295672 NaN 9339 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12151 56.031 NaN 3112500 35 0 295100 0.261 + 7937 GDTWQSVVSW 10 140 582.7692560816736 1163.523959230147 2 582.7698364257812 MULTI HCD FTMS 0 0 0 12148 1554835.5 0.1654120440368128 -5 0.14453887939453125 3 Unmodified _GDTWQSVVSW_ REV__ENSG00000171596|ENST00000305141|NMUR1 38.175570920033316 0.1612389583597779 1 ASV[YT]SVSW 9 -1 71.195 0 0 6.1189 0 0 165.0596667824811 0 165.0596667824811 0 28.761649677965764 0 0 0 2.723197507588033 0 1.4604093769761874 0 ASV[YT]SVSW 6.1189 - 21634 + NaN NaN 559560.4 NaN 9340 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12152 56.035 NaN 846320 35 0 104870 0.261 + 13378 KYNEKFFK 8 105 552.2963468324864 NaN 0 552.2799072265625 PEAK HCD FTMS 0 0 0 12148 33214.671875 1 0 0 4 Unmodified _KYNEKFFK_ REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1 19.438996006549623 0.38500361301801034 1 TV{M(Oxidation (M))|F}N{I|L}D 6 -1 36.441 0 0 3.3051 0 0 165.11396787129996 245.09299646549064 410.20696433679063 0 0 0 0 0 0 0 0.28872548999643577 1.0189301784845295 TV{M(Oxidation (M))|F}N{I|L}D 3.3051 - 2343 + NaN NaN 217346.8 NaN 9341 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12153 56.038 NaN 910680 35 0 128430 0.263 + 15437 LPDKWQHDLF 10 80 433.5555552271039 1297.6448362815117 3 433.55572509765625 MULTI HCD FTMS 0 0 0 12148 338880.75 0.457429145031178 3 -0.08827972412109375 5 Unmodified _LPDKWQHDLF_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 44.391923383255 0.10729416141032597 1 {I|L}P 2 8 32.078 0 0 2.472 0 0 0 1084.4865578061967 1084.4865578061967 2.8566687589218276 0 0 0 0 0.2614393726401688 1 0 0 + {I|L}P 2.472 + + 121 + NaN NaN 231033 NaN 9342 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12154 56.041 NaN 954950 35 0 139900 0.261 + 15755 LPFPKDASL 9 89 494.2791154303076 986.5436779274153 2 494.2793273925781 MULTI HCD FTMS 0 0 0 12148 315200.96875 0.1791418177069946 -5 0.14453887939453125 6 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 93.16586880292088 0.00444300900000894 1 {I|L}P{M(Oxidation (M))|F}PG[VS]AS{I|L} 10 3 + 86.314 0 0 8.7492 8.7492 94.155 0 0 0 27.034257775060425 12.061232934493958 12.061232934493958 12.061232934493958 0 2.363364334130467 1.5228787452803376 1.4476212463643423 0 {I|L}P{M(Oxidation (M))|F}PG[VS]AS{I|L};[{I|L}P]{M(Oxidation (M))|F}PKDAS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PKDAS{I|L};{I|L}PP{M(Oxidation (M))|F}G[VS]AS{I|L};[{I|L}P]{M(Oxidation (M))|F}[NS]S{I|L}P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NS]S{I|L}P{I|L};[{I|L}P]{M(Oxidation (M))|F}PKT[DG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PKT[DG]{I|L};[{I|L}P]{M(Oxidation (M))|F}[NS][{I|L}P]S{I|L};[{I|L}P][NS]S{M(Oxidation (M))|F}{I|L}P{I|L} 8.7492;7.5266;7.3249;6.9998;5.2286;5.0269;4.6127;4.411;4.0921;3.9614 -;+;-;-;-;-;-;-;-;- + 561 + NaN NaN 222257.9 NaN 9343 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12155 56.045 NaN 646740 35 0 118320 0.261 + 29346 TYPENWRAF 9 100 592.280077016477 1182.5456010997539 2 592.2803344726562 MULTI HCD FTMS 0 0 0 12148 162211.0625 0.4683637800760462 7 -0.18072509765625 7 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 19.361941925380144 0.1930734562688509 1 [YT]P 3 6 30.814 0 0 2.6058 0 0 0 818.3577974908811 818.3577974908811 11.148481219398075 0 0 0 0 0.4247425010840047 2 0 0 + [YT]P 2.6058 + + 402 + NaN NaN 188480.5 NaN 9344 2809 12148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12157 56.05 NaN 1780700 35 0 164670 0.327 + 18248 MPDVDLHL 8 100 478.2313836346678 954.4482143361356 2 478.2312927246094 MULTI HCD FTMS 0 0 0 12156 994284.75 0.8488310732599704 -2 0.05570220947265625 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 153.26226096763125 0.021936052826326328 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 73.865 0 0 7.7391 7.7391 88.968 0 0 0 6.1914528384225065 6.1914528384225065 6.1914528384225065 6.1914528384225065 0 2.305462187404089 0 2.124803706770636 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}{I|L}H;[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}{I|L}{[MG]|[TS]}CS{I|L};{I|L}[YT]QQCS{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}QVS{I|L} 7.7391;7.0904;6.1634;5.2788;1.7695;1.3344;1.207;0.8882;0.81353;0.79332 +;+;-;-;-;-;-;-;-;- + 1475 NaN NaN 358373.6 NaN 9345 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12158 56.054 NaN 1099800 35 0 163450 0.261 + 16721 LYANMFERL 9 81 586.7918830476151 1171.56921316203 2 586.7921142578125 MULTI HCD FTMS 0 0 0 12156 528064.3125 0.7414970571470321 -1 0.0261688232421875 2 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 136.39213081522345 0.00021731600835925866 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 113.23 0 0 9.6647 9.6647 93.564 0 0 0 22.29248516975146 10.892718607161171 10.892718607161171 9.208187539523749 0 2.8979400086720375 2 1.066901560044258 0.6747425010840047 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};{I|L}Y{[C(Carbamidomethyl (C))G]|[NC]}[YV]ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[VG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9.6647;8.8787;8.7349;7.5275;6.8249;6.2614;5.8406;5.6331;5.4754;5.3207 +;-;+;-;-;-;-;-;-;- + 1145 + NaN NaN 267712.1 NaN 9346 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12159 56.057 NaN 1428500 35 0 91425 0.261 + 23494 RMGNWEVSMS 10 114 598.7646954061678 NaN 0 598.7646484375 PEAK HCD FTMS 0 0 0 12156 495558.28125 0.3934778737900415 -4 0.11820220947265625 3 Unmodified _RMGNWEVSMS_ REV__nc|ENSG00000126214|Q07866-2|KLC1 45.69961567697781 0.10428268281932927 1 SVS 3 -1 36.828 0 0 3.0805 0 0 236.0800357103472 683.279910530877 919.3599462412242 0 0 0 0 0 1.4163865622122673 0 1.1861818737241734 0 SVS 3.0805 - 2704 + NaN NaN 303625.6 NaN 9347 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12160 56.061 NaN 791200 35 0 49880 0.261 -1 YYRIEMTV 8 107 545.7655293873025 1089.516505841405 2 546.7799682617188 MULTI HCD FTMS 0 0 0 12156 30508.126953125 0.3884558526712058 16 -0.4212455749511719 4 Oxidation (M) _YYRIEM(Oxidation (M))TV_ ENST00000344756.8_1_7:155100763-155100898:+|nuORF 14.838274106304384 0.4846187982323419 1 {I|L}RC(Carbamidomethyl (C))DYAQ 7 -1 27.37 0 0 2.5121 0 0 165.078905174025 0 165.078905174025 0 4.138214839117005 0 0 0 0 0 0.2614393726401688 0 {I|L}RC(Carbamidomethyl (C))DYAQ 2.5121 - 2067 NaN NaN 198577.2 NaN 9348 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12161 56.064 NaN 259280 35 0 13594 0.261 + 18557 MVEELEKAL 9 66 531.281245951436 1060.5479389696718 2 531.2813110351562 MULTI HCD FTMS 0 0 0 12156 91815.25 0.5067932059316143 3 -0.07479476928710938 5 Unmodified _MVEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 51.41523569358685 0.02959097413485123 1 {[ET]|[MV]}EE{I|L}EKA{I|L} 9 0 + 54.011 0 0 5.0927 5.0927 89.734 0 0 0 4.863467363607782 4.863467363607782 4.863467363607782 22.43501263708417 0 2.4802046884880937 0 0.28872548999643577 0 + + {[ET]|[MV]}EE{I|L}EKA{I|L};{[ET]|[MV]}EE{I|L}{[QS]|[NT]}{I|L}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WR]EKA{I|L} 5.0927;2.9773;1.5721 +;-;- + 137 + NaN NaN 122126.5 NaN 9349 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12162 56.067 NaN 290340 35 0 27086 0.261 + 24550 RYLLFARQF 9 79 607.3455500107799 1212.6765470883597 2 607.345703125 MULTI HCD FTMS 0 0 0 12156 50522.75 0.46431470037329486 1 -0.029449462890625 6 Unmodified _RYLLFARQF_ ENSG00000076003|ENST00000264156|MCM6 27.223235318498237 0.1251536255799991 1 RHRA 4 7 22.638 0 0 1.8668 0 0 0 689.3790987604124 689.3790987604124 6.439870321342283 0 0 0 0 0 0 0 0.3252574989159953 RHRA 1.8668 - 259 + NaN NaN 130638.3 NaN 9350 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12163 56.071 NaN 327120 35 0 97205 0.264 + -1 LCALRLHPNQ 10 65 407.8896283782468 1220.6470557349405 3 407.8904113769531 MULTI HCD FTMS 0 0 0 12156 68499.09375 0.5608569147318617 7 -0.183868408203125 7 Carbamidomethyl (C) _LC(Carbamidomethyl (C))ALRLHPNQ_ REV__PCDHB5|p.S501C|1|0.19|ENSG00000113209|chr5:141136936-141136936|C/G|missense_variant 3.5870582119611467 0.4563168352879256 1 SG 2 -1 12.959 0 0 1.0616 0 0 947.5357325369206 126.03467737369375 1073.5704099106144 0 0 0 0 0 0.5 0 0 0 SG 1.0616 - 43 + NaN NaN 139842.9 NaN 9351 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12164 56.074 NaN 217260 35 0 24575 0.261 + 10247 IILVTILLLL 10 70 562.407436530139 NaN 0 562.2936401367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _IILVTILLLL_ ENSG00000185899|ENST00000332690|TAS2R60 0 0.34018428902965525 1 T 1 9 7.8567 0 0 0.69974 0 0 262.36176551443276 756.3679903619749 1018.7297558764076 0 0 0 0 0 0 0 0.3252574989159953 0 + T 0.69974 + + 15 + NaN NaN 114222.2 NaN 9352 2810 12156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12166 56.079 NaN 826330 35 0 68985 0.327 + 17569 LYVMVNAKF 9 108 550.7941921602978 1099.5738313873956 2 550.7943725585938 MULTI HCD FTMS 0 0 0 12165 294306.5 0.7297038928613545 2 -0.045345306396484375 1 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ ENSG00000074201|ENST00000525428|CLNS1A 120.45040980043947 0.0012363446172167195 1 {I|L}YV{M(Oxidation (M))|F}VNAK{M(Oxidation (M))|F} 9 0 + 113.65 0 0 10.336 10.336 94.02 0 0 0 15.91612688240572 15.91612688240572 15.91612688240572 9.208187539523749 0 3.048455006504028 2 0 1.1382104921644451 + + {I|L}YV{M(Oxidation (M))|F}VNAK{M(Oxidation (M))|F};{I|L}YV{M(Oxidation (M))|F}VGGAK{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}VNAK{M(Oxidation (M))|F};{I|L}YVM[QT]AK{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}VGGAK{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}{[QG]|[NA]}VK{M(Oxidation (M))|F};[Y{I|L}]VC(Carbamidomethyl (C)){[TV]|[{I|L}S]}AK{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y{I|L}VNAK{M(Oxidation (M))|F};[Y{I|L}]V[CG]{[TV]|[{I|L}S]}AK{M(Oxidation (M))|F};[Y{I|L}]VC(Carbamidomethyl (C))[TA]VK{M(Oxidation (M))|F} 10.336;9.4982;8.8882;8.0491;7.7045;6.2293;6.0641;5.8811;5.2267;5.223 +;-;+;-;-;-;-;-;-;- + 2363 + NaN NaN 211348.3 NaN 9353 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12167 56.083 NaN 627340 35 0 76798 0.261 + 8019 GGEWPKEQSW 10 79 602.274928580379 1202.5353042275578 2 602.2749633789062 MULTI HCD FTMS 0 0 0 12165 336004.40625 0.5697680038128171 -4 0.111419677734375 2 Unmodified _GGEWPKEQSW_ REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF 19.361941925380144 0.3300069447713393 1 {[MS]|[{M(Oxidation (M))|F}A]}GSVS[YT]VSW 11 -1 {[MS]|[{M(Oxidation (M))|F}A]}G + + 66.592 13.71 4.9839 5.5376 5.5376 62.496 0 0 0 0 51.67017533604145 0 0 0 2.1989700043360187 0 1.1237125054200234 0 {[MS]|[{M(Oxidation (M))|F}A]}GSVS[YT]VSW 5.5376 - 1083 + NaN NaN 193804.4 NaN 9354 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12168 56.087 NaN 354660 35 0 93877 0.264 + 20655 PFIKSQHELLF 11 51 453.58694497009117 1357.7390055104736 3 453.5869445800781 MULTI HCD FTMS 0 0 0 12165 155280.625 0.743878490874203 -3 0.08515167236328125 3 Unmodified _PFIKSQHELLF_ ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH 17.86316937532769 0.30144003132722086 1 {I|L}{I|L}M{I|L}{M(Oxidation (M))|F} 5 8 47.959 0 0 3.5323 0 0 722.3671742169937 0 722.3671742169937 0 24.006375246153908 0 0 0 1 0 0 0 {I|L}{I|L}M{I|L}{M(Oxidation (M))|F} 3.5323 - 25 NaN NaN 135179.8 NaN 9355 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12169 56.09 NaN 1317600 35 0 154560 0.261 -1 YTCQAENGVGS 11 96 593.2452042705696 1184.4758556079391 2 593.2303466796875 MULTI HCD FTMS 0 0 0 12165 80590.125 0.12298164405670553 30 -0.7912750244140625 4 Carbamidomethyl (C) _YTC(Carbamidomethyl (C))QAENGVGS_ ENSG00000088827|ENST00000344754|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;SIGLEC1|p.I319Sfs*12|1|0.19|ENSG00000088827|chr20:3703844-3703844|G/-|frameshift_variant 10.150570793230772 0.3686401556411756 1 [{I|L}V]{I|L}DE 5 -1 43.94 0 0 3.7097 0 0 0 612.1478975885374 612.1478975885374 26.540776468027204 0 0 0 0 0.7742275032520141 1.6989700043360187 0 0 [{I|L}V]{I|L}DE 3.7097 - 258 + NaN NaN 286590.6 NaN 9356 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12170 56.094 NaN 497370 35 0 44630 0.261 + 34369 YPEGFEIHSM 10 110 605.2649742128226 1208.5153954924451 2 605.7540283203125 MULTI HCD FTMS 0 0 0 12165 20425.56640625 0.15469087178763824 -1 0.029449462890625 5 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 65.23502041540118 0.023231415588018726 1 TSVS[H{I|L}]VS[EC] 10 9 30.442 0 0 2.5189 0 0 148.01318668802656 0 148.01318668802656 0 -4.471128017558641 -4.471128017558641 0 0 0.3054621874040891 0 1.2984550065040281 0 TSVS[H{I|L}]VS[EC] 2.5189 - 1477 + NaN NaN 165327 NaN 9357 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12171 56.097 NaN 664270 35 0 35383 0.261 + 16941 LYHGLPDFR 9 89 559.2934769175092 1116.5724009018184 2 559.2936401367188 MULTI HCD FTMS 0 0 0 12165 115750.953125 0.9772876164905901 1 -0.03266143798828125 6 Unmodified _LYHGLPDFR_ REV__ENSG00000110497|ENST00000683756|AMBRA1;REV__nc|ENSG00000110497|Q9C0C7-2|AMBRA1;REV__nc|ENSG00000110497|Q9C0C7-3|AMBRA1;REV__nc|ENSG00000110497|Q9C0C7-4|AMBRA1;REV__nc|ENSG00000110497|Q9C0C7-5|AMBRA1;REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1 28.486842064014134 0.11819662193267319 1 {I|L}YPD 4 -1 36.375 0 0 3.2578 0 0 0 625.3070162408811 625.3070162408811 10.868193983395642 0 0 0 0 0 1 1 0 {I|L}YPD 3.2578 - 882 + NaN NaN 181338.2 NaN 9358 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12172 56.1 NaN 607930 35 0 86574 0.261 + 26577 SVSHPFSVN 9 56 487.2405973846136 972.4666418360272 2 487.24066162109375 MULTI HCD FTMS 0 0 0 12165 268808.375 0.5379410948588815 -3 0.08515167236328125 7 Unmodified _SVSHPFSVN_ REV__nc|ENSG00000100987|Q9NZR4-2|VSX1;REV__nc|ENSG00000100987|Q9NZR4-3|VSX1 37.97399986684836 0.07464525285885698 1 STSVN 5 -1 61.498 0 0 6.3239 0 0 466.232695466256 0 466.232695466256 0 19.493018730907394 0 0 0 1.7302046884880937 0 0.9247425010840047 0 STSVN 6.3239 - 294 NaN NaN 175908.7 NaN 9359 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12173 56.103 NaN 223080 35 0 32104 0.261 + 14607 LFRKHKTISF 10 56 426.2557902084414 NaN 0 426.25604248046875 PEAK HCD FTMS 0 0 0 12165 60280.3671875 0.5677269714214154 -1 0.029449462890625 8 Unmodified _LFRKHKTISF_ ENSG00000184140|ENST00000328882|OR4F6 7.477065608646677 0.333784957163546 1 {I|L} 1 9 5.4846 0 0 0.64486 0 0 618.3397226514547 116.05016504459218 734.3898876960469 0 0 0 0 0 0 0 0 0 + {I|L} 0.64486 + + 7 + NaN NaN 106766.6 NaN 9360 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12174 56.107 NaN 262600 35 0 25106 0.261 -1 SYSHIMALI 9 54 525.7679606452808 1049.5213683573616 2 526.2691650390625 MULTI HCD FTMS 0 0 0 12165 54830.3515625 0.4677068467489263 12 -0.316650390625 9 Oxidation (M) _SYSHIM(Oxidation (M))ALI_ ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}A{I|L}{I|L} 4 -1 33.175 0 0 3.161 0 0 587.2737904279312 0 587.2737904279312 0 29.195925227640984 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}A{I|L}{I|L} 3.161 + + 45 NaN NaN 131750.8 NaN 9361 2811 12165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12176 56.112 NaN 1262500 35 0 179940 0.327 + 1965 DAIRDAEIL 9 90 508.2746003872821 1014.5346478413642 2 508.274658203125 MULTI HCD FTMS 0 0 0 12175 979696.9375 0.7428209123657947 3 -0.06800460815429688 1 Unmodified _DAIRDAEIL_ ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 67.83816525789305 0.009787749748478139 1 {[DA]|[EG]}{I|L}R{[DA]|[EG]}E{I|L}{I|L} 9 0 + 72.673 0 0 7.1632 7.1632 88.448 0 0 0 6.919628234359578 6.919628234359578 6.919628234359578 7.257724967479859 0 2.305462187404089 1.3979400086720375 0.6307196863200843 0 + + {[DA]|[EG]}{I|L}R{[DA]|[EG]}E{I|L}{I|L};{[DA]|[EG]}{I|L}R{[CP]|[EA]}D{I|L}{I|L};{[DA]|[EG]}{I|L}E{[NV]|[RG]}E{I|L}{I|L};{[DA]|[EG]}{I|L}R{I|L}EAD{I|L};{[DA]|[EG]}{I|L}E{[QV]|[N{I|L}]|[RA]|[KV]}D{I|L}{I|L};{[DA]|[EG]}{I|L}R{[CP]|[EA]}{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}AR{[DA]|[EG]}E{I|L}{I|L};{[DA]|[EG]}{[RE]|[WV]}{[VA]|[{I|L}G]}E{I|L}{I|L};{[DA]|[EG]}{I|L}E{[NV]|[RG]}KN{I|L};{[DA]|[EG]}{I|L}[VG]{[DA]|[EG]}KN{I|L} 7.1632;6.4478;6.3736;6.1699;5.6582;5.1151;5.0473;4.7041;4.6487;4.5306 +;-;-;-;-;-;-;-;-;- + 1585 NaN NaN 283222.1 NaN 9362 2812 12175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12177 56.116 NaN 189240 35 0 14469 0.261 -1 AMQRPCLSCP 10 65 618.2700557534544 1234.5255585737086 2 618.2687377929688 MULTI HCD FTMS 0 0 0 12175 155292.171875 0.926953151960007 -3 0.08827972412109375 2 2 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))QRPC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))P_ ENST00000567874.5_1_16:90015852-90021630:+|nuORF 9.38312468134398 0.42334543440173333 1 SKSG{[CP]|[EA]} 6 -1 24.407 0 0 1.9771 0 0 657.2662945129649 0 657.2662945129649 0 2.1002786889311054 0 0 0 0.9247425010840047 0 0 0 SKSG{[CP]|[EA]} 1.9771 - 88 + NaN NaN 114730.6 NaN 9363 2812 12175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12178 56.119 NaN 130640 35 0 12083 0.261 -1 MPDGQFKDISL 11 50 633.8069866554331 1265.599420377666 2 633.805908203125 MULTI HCD FTMS 0 0 0 12175 83263.4765625 0.1389009587932336 -15 0.4329185485839844 3 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 18.721224879955976 0.29396376558286563 1 {I|L}S{I|L} 3 -1 30.802 0 0 2.4338 0 0 934.3843861310562 0 934.3843861310562 0 25.31743128760553 0 0 0 0.5 0 0.5 0 {I|L}S{I|L} 2.4338 + + 16 NaN NaN 122076.8 NaN 9364 2812 12175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12180 56.124 NaN 2265000 35 0 132570 0.327 + 23495 RMGNWEVSMS 10 130 598.7646954061678 NaN 0 598.7646484375 PEAK HCD FTMS 0 0 0 12179 1198358.875 0.9515080667868995 -1 0.012683868408203125 1 Unmodified _RMGNWEVSMS_ REV__nc|ENSG00000126214|Q07866-2|KLC1 60.07390631473393 0.05021532151793393 1 VGSVS 5 -1 43.588 0 0 3.646 0 0 80.00988888814602 683.2791381509999 763.2890270391459 0 0 0 0 0 1.4802046884880937 0 1.4049471895720984 0 VGSVS 3.646 - 4654 + NaN NaN 437083.9 NaN 9365 2813 12179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12181 56.129 NaN 1438700 35 0 223560 0.261 + 32161 VYSPHVLNL 9 113 521.2900658082605 1040.5655786833208 2 521.2899780273438 MULTI HCD FTMS 0 0 0 12179 676607.6875 0.4207058728249696 -3 0.07479476928710938 2 Unmodified _VYSPHVLNL_ DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;ENSG00000079805|ENST00000389253|DNM2;ENSG00000106976|ENST00000372923|DNM1;ENSG00000197959|ENST00000627582|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;nc|ENSG00000106976|Q05193-2|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3 147.05914393524117 1.1935124485855994E-05 1 VYSPHV{I|L}N{I|L} 9 0 + 90.452 0 0 8.6926 8.6926 97.854 0 0 0 58.33059910451778 12.891566374078693 12.891566374078693 69.72093803183157 0 2.504432191740108 1.6989700043360187 0.6989700043360187 0.5387254899964358 + + VYSPHV{I|L}N{I|L};[PS][YV]HV{I|L}N{I|L};[KS]{[WT]|[RM]}[RH]N{I|L};[KA][R{M(Oxidation (M))|F}][RH]N{I|L} 8.6926;1.9923;1.2908;0.72841 +;-;-;- + 1175 + NaN NaN 308175.9 NaN 9366 2813 12179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12182 56.132 NaN 1165700 35 0 239000 0.261 + 18051 MLSPEPNGGIA 11 111 543.2699493351529 1084.5253457371057 2 543.267333984375 MULTI HCD FTMS 0 0 0 12179 272717.46875 0.8361381026483867 -1 0.012683868408203125 3 Unmodified _MLSPEPNGGIA_ REV__ENSG00000161270|ENST00000378910|NPHS1;REV__nc|ENSG00000161270|O60500-2|NPHS1 10.799506525563784 0.36298595732910816 1 CSADPT{M(Oxidation (M))|F}[YQ] 9 -1 31.31 0 0 2.887 0 0 54.05820949194237 0 54.05820949194237 0 7.148415687162956 0 0 0 0.5 0 0.3252574989159953 0 CSADPT{M(Oxidation (M))|F}[YQ] 2.887 - 2869 + NaN NaN 260808.7 NaN 9367 2813 12179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12183 56.135 NaN 655210 35 0 43142 0.261 + 26615 SWIGSHGVSTS 11 102 559.26537366747 1116.51619440174 2 558.7593383789062 MULTI HCD FTMS 0 0 0 12179 159030.375 0.8748772517597353 -1 0.012683868408203125 4 Unmodified _SWIGSHGVSTS_ REV__ENSG00000132466|ENST00000358602|ANKRD17;REV__nc|ENSG00000132466|O75179-2|ANKRD17;REV__nc|ENSG00000132466|O75179-4|ANKRD17;REV__nc|ENSG00000132466|O75179-6|ANKRD17;REV__nc|ENSG00000132466|O75179-7|ANKRD17 17.11289562659939 0.30797719109864646 1 {[DS]|[MA]|[CV]|TT}AVSA[NP]VS[NG] 12 -1 + 30.191 0 0 2.7041 2.7041 79.558 0 0 0 1.4446956570314349 5.096991957260279 1.4446956570314349 1.4446956570314349 0 0.5 0 1.4846368802282017 0.3054621874040891 {[DS]|[MA]|[CV]|TT}AVSA[NP]VS[NG];{[WS]|[C(Carbamidomethyl (C)){I|L}]}VSA[NP]VS[NG];{[DS]|[MA]|[CV]|TT}ATR[NP]VS[NG];{[DS]|[MA]|[CV]|TT}AVS{[NV]|[RG]}[PA]S[NG];{[WS]|[C(Carbamidomethyl (C)){I|L}]}VS{[NV]|[RG]}[PA]S[NG];[YT][PG][HV]SVS[NG];{[DS]|[MA]|[CV]|TT}AV[KQ][DP]S[NG];[YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}MAVS[NG];{[CT]|[{M(Oxidation (M))|F}G]}S[H{I|L}]EAVS[NG];{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[KQ][DP]S[NG] 2.7041;2.5747;2.2392;2.126;1.9967;1.9068;1.8914;1.8536;1.8024;1.7652 -;-;-;-;-;-;-;-;-;- 3374 NaN NaN 186358.8 NaN 9368 2813 12179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12184 56.139 NaN 2127600 35 0 392090 0.262 + 7837 FYRSTAPS 8 107 464.72986177461325 927.4451706160265 2 464.72930908203125 MULTI HCD FTMS 0 0 0 12179 105385.1953125 0.6029972339373421 -1 0.012683868408203125 5 Unmodified _FYRSTAPS_ ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000116990|P12524-3|MYCL 78.14939416004806 0.020287975522436184 1 SVSTS{M(Oxidation (M))|F} 6 6 82.573 0 0 8.9033 0 0 0 316.14167200260005 316.14167200260005 40.92863739093026 0 0 0 0 1.8494850021680094 1.3979400086720375 1.6989700043360187 0 SVSTS{M(Oxidation (M))|F} 8.9033 - 2698 + NaN NaN 412322.9 NaN 9369 2813 12179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12185 56.142 NaN 574130 35 0 118860 0.261 -1 VMAPRTLLL 9 79 515.3098793642871 1028.605205795374 2 515.8109741210938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 1 AD{I|L} 3 -1 31.242 0 0 3.0373 0 0 711.4650993230783 0 711.4650993230783 0 15.757659435244733 0 0 0 0.805462187404089 0 0 0 AD{I|L} 3.0373 - 85 NaN NaN 172539.5 NaN 9370 2813 12179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12187 56.147 NaN 11260000 35 0 893050 0.327 + 1861 CVSSFFAISW 10 150 573.7657539071055 1145.5169548810109 2 573.763427734375 MULTI HCD FTMS 0 0 0 12186 6859417.5 1 0 0 1 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 54.773552608820026 0.0604291769046433 1 HSVSTYVSW 9 7 103.12 0 0 9.0024 0 0 81.0337450912128 0 81.0337450912128 0 58.21591308405429 0 0 0 3.4604093769761874 0 2.069095041121134 0 HSVSTYVSW 9.0024 - 45833 + NaN NaN 934373.9 NaN 9371 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12188 56.151 NaN 2593400 35 0 602900 0.261 + 28997 TYDYNFHSF 9 122 597.2486620026949 1192.4827710721897 2 597.2485961914062 MULTI HCD FTMS 0 0 0 12186 1661418.25 0.9064499899986885 -1 0.02266693115234375 2 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 181.69086120494794 9.610660986922852E-13 1 TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 9 0 + 116.7 0 0 9.786 9.786 95.807 0 0 0 18.349621957594096 18.349621957594096 18.349621957594096 14.436974992327123 0 2.385151878060192 2 1.9991348669726232 0.5228787452803376 + + TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYN{M(Oxidation (M))|F}HAY;{[YD]|[{M(Oxidation (M))|F}M]}TYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{[WN]|[YH]}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYN{M(Oxidation (M))|F}HAY;TYDYGG{[WN]|[YH]}A{M(Oxidation (M))|F};[YT]D[VS][HT]HS{M(Oxidation (M))|F} 9.786;8.5753;8.2472;7.2754;6.4475;5.9248;5.479;5.4757;5.1526;4.9485 +;-;+;-;-;-;-;-;-;- + 5094 + NaN NaN 479890.3 NaN 9372 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12189 56.155 NaN 1126200 35 0 220530 0.262 + 30656 VPDPNVIKL 9 79 497.8001966216024 993.5858403100049 2 497.8002624511719 MULTI HCD FTMS 0 0 0 12186 680291.9375 0.8442564625383902 -2 0.035350799560546875 3 Unmodified _VPDPNVIKL_ ENSG00000157349|ENST00000288071|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B 74.19965305603844 0.007729275404663812 1 VPDPNV{I|L}K{I|L} 9 0 + 82.686 0 0 8.322 8.322 88.662 0 0 0 3.3496219575940955 3.3496219575940955 3.3496219575940955 3.3496219575940955 0 2.4604093769761874 1.5228787452803376 0.3252574989159953 0.6747425010840047 + + VPDPNV{I|L}K{I|L};[VP]DNPV{I|L}K{I|L};[DP]VNPV{I|L}K{I|L};[VP]NDPV{I|L}K{I|L};[VP]DNP{I|L}VK{I|L};[VP]DN{I|L}PVK{I|L};[VP]DGGPV{I|L}K{I|L};[DP]VNP{I|L}VK{I|L};[DP]VN{I|L}PVK{I|L};[DP]VGGPV{I|L}K{I|L} 8.322;7.9849;7.5331;7.1787;7.0014;6.8757;6.6749;6.5497;6.424;6.2232 +;-;-;-;-;-;-;-;-;- + 805 + NaN NaN 245094.9 NaN 9373 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12190 56.158 NaN 689070 35 0 48974 0.261 + 28850 TVKCYFVEE 9 87 559.26537366747 1116.51619440174 2 559.76806640625 MULTI HCD FTMS 0 0 0 12186 191909.796875 0.8132115635196406 -1 0.02266693115234375 4 Unmodified _TVKCYFVEE_ REV__BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;REV__BAZ1A|p.P88Sfs*16|1|0.82|ENSG00000198604|chr14:34862174-34862175|-/A|frameshift_variant;REV__ENSG00000198604|ENST00000360310|BAZ1A;REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A 14.838274106304384 0.23215694253501695 1 SVS[HV][PG]V{M(Oxidation (M))|F} 9 -1 31.551 0 0 2.8259 0 0 189.07086687191014 0 189.07086687191014 0 10.74925630161275 0 0 0 0.7614393726401688 0 1.0114393726401687 0 SVS[HV][PG]V{M(Oxidation (M))|F} 2.8259 - 1081 + NaN NaN 187542.5 NaN 9374 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12191 56.161 NaN 483540 35 0 58707 0.261 -1 SPCHIEMIL 9 74 529.7544000547612 1057.4942471763222 2 530.2550048828125 MULTI HCD FTMS 0 0 0 12186 115658.1484375 0.7708757367043302 -13 0.3467254638671875 5 Oxidation (M) _SPCHIEM(Oxidation (M))IL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 34.10243960390752 0.09241788333544565 1 {I|L}{M(Oxidation (M))|F}E{I|L}C(Carbamidomethyl (C))V{M(Oxidation (M))|F} 7 -1 41.558 0 0 3.9298 0 0 131.09630276784634 0 131.09630276784634 0 26.520445945405477 0 0 0 0.7396518287104438 0 0.6694451763165201 0 {I|L}{M(Oxidation (M))|F}E{I|L}C(Carbamidomethyl (C))V{M(Oxidation (M))|F} 3.9298 - 682 + NaN NaN 160950.5 NaN 9375 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12192 56.165 NaN 438900 35 0 66889 0.261 + 5532 FLEGSNDAL 9 59 483.23251539992305 964.4504778666461 2 483.2325744628906 MULTI HCD FTMS 0 0 0 12186 190431.21875 0.5675969329008252 -4 0.09746170043945312 6 Unmodified _FLEGSNDAL_ ENSG00000007314|ENST00000435607|SCN4A 22.736283301280096 0.1639198954644489 1 {[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}[NS]DA{I|L} 9 2 + 47.157 0 0 4.8896 4.8896 61.4 0 0 0 4.762036441594191 30.167659268138323 4.762036441594191 0 0 0.9247425010840047 0 0 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}[NS]DA{I|L};{[QN]|[E{I|L}]|[KN]}G[NS]{M(Oxidation (M))|F}DA{I|L};{[QN]|[E{I|L}]|[KN]}EE{M(Oxidation (M))|F}DA{I|L};{[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}D[NS]A{I|L};{[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}DT[NG]{I|L};{[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}DTA{[NV]|[RG]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[ES]|[DT]|[{I|L}C]}{[VA]|[{I|L}G]}DA{I|L};{[QN]|[E{I|L}]|[KN]}GT{[{M(Oxidation (M))|F}D]|MM}[NG]{I|L};{[QN]|[E{I|L}]|[KN]}G{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QD]|[EN]|[WG]|[KD]|[RS]};{[QN]|[E{I|L}]|[KN]}GT{[{M(Oxidation (M))|F}D]|MM}A{[NV]|[RG]} 4.8896;4.8896;4.53;4.059;2.9944;2.2875;1.0833;0.79818;0.5075;0.0913 -;-;-;-;-;-;-;-;-;- 203 NaN NaN 164649.3 NaN 9376 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12193 56.168 NaN 756040 35 0 47312 0.261 + 4962 FATFVFNVF 9 104 546.2793047212774 1090.5440565093547 2 546.2816772460938 MULTI HCD FTMS 0 0 0 12186 100627.015625 0.6963468473095492 6 -0.16481399536132812 7 Unmodified _FATFVFNVF_ ENSG00000107130|ENST00000372398|NCS1;nc|ENSG00000107130|P62166-2|NCS1;NCS1|p.D73H|1|0.09|ENSG00000107130|chr9:130217959-130217959|G/C|missense_variant 24.67388899826682 0.14717941214954053 1 T{M(Oxidation (M))|F} 2 7 28.94 0 0 2.6537 0 0 824.4136268112459 0 824.4136268112459 0 7.89027037969592 0 0 0 1 0 0.2742275032520141 0 + T{M(Oxidation (M))|F} 2.6537 + + 1585 NaN NaN 199017.6 NaN 9377 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12194 56.171 NaN 327090 35 0 14600 0.263 -1 TCQDIDECSF 10 89 406.48600756859383 1216.4361933059815 3 406.4856262207031 MULTI HCD FTMS 0 0 0 12186 40465.78515625 0.37184993822387724 1 -0.03265380859375 8 Carbamidomethyl (C) _TC(Carbamidomethyl (C))QDIDECSF_ ENSG00000159307|ENST00000360835|SCUBE1 5.783430956126388 0.4446910851847804 1 S{M(Oxidation (M))|F} 2 -1 17.321 0 0 1.4239 0 0 964.3254277803941 0 964.3254277803941 0 10.938513989038032 0 0 0 0 0 0.3252574989159953 0 S{M(Oxidation (M))|F} 1.4239 + + 62 + NaN NaN 132318.7 NaN 9378 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12195 56.175 NaN 136850 35 0 7379.5 0.261 + 12179 KKLKRKKQVA 10 47 613.9240112304688 NaN 0 613.9240112304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _KKLKRKKQVA_ ENSG00000113387|ENST00000265073|SUB1 0.4007161486938917 0.3398413315442166 1 {M(Oxidation (M))|F} 1 10 5.4846 0 0 0.44741 0 0 150.41115810371235 925.3474215143186 1075.758579618031 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.44741 - 3 + NaN NaN 105220.8 NaN 9379 2814 12186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12197 56.18 NaN 52604000 35 0 8581700 0.327 -1 DPRNATSVCI 10 113 566.7738872279571 1131.533221522714 2 566.7738647460938 MULTI HCD FTMS 0 0 0 12196 40510056 0.9443872979407956 1 -0.024440765380859375 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 1 AP{M(Oxidation (M))|F}STSVSW 9 -1 91.214 0 0 8.0611 0 0 151.07389398193283 0 151.07389398193283 0 54.024644064139814 0 0 0 2.8494850021680094 0 2.2416440611282624 0 AP{M(Oxidation (M))|F}STSVSW 8.0611 - 16866 + NaN NaN 615154.4 NaN 9380 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12198 56.184 NaN 11215000 35 0 1027700 0.166 + 5404 FHATTSEVSW 10 138 582.7692560816736 1163.523959230147 2 582.7694091796875 MULTI HCD FTMS 0 0 0 12196 8653134 0.9205684988955051 1 -0.024440765380859375 2 Unmodified _FHATTSEVSW_ ENSG00000155380|ENST00000369626|SLC16A1;nc|ENSG00000155380|P53985-2|SLC16A1 37.97399986684836 0.1629881689457739 1 SVSTYVSW 8 6 94.806 0 0 8.1482 0 0 236.07820976297006 0 236.07820976297006 0 51.327446452699945 0 0 0 2.853917193908117 0 1.841129063296272 0 SVSTYVSW 8.1482 - 26909 + NaN NaN 723024.2 NaN 9381 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12199 56.186 NaN 1365700 35 0 143760 0.262 + 6961 FPVRDGVVL 9 109 501.2925655325258 1000.5705781318517 2 501.2926330566406 MULTI HCD FTMS 0 0 0 12196 656841.9375 0.7144147951535087 3 -0.07324600219726562 3 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 63.960520009940105 0.0120409805053046 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L} 9 0 + 54.152 0 0 5.4121 5.4121 85.237 0 0 0 19.990823894397565 32.54698567845174 19.990823894397565 7.021307353014947 0 1.305462187404089 1.5228787452803376 0.6505149978319906 0.2742275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GV{I|L}V;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]{I|L}V;[{M(Oxidation (M))|F}V]P[RD]GVV{I|L};[VP]{M(Oxidation (M))|F}[RD]GVV{I|L};[WR]{NN|[MP]|[D{I|L}]|[EV]}TVV{I|L};[{M(Oxidation (M))|F}V]P[RV][DG]V{I|L};[VP]{[CA]|SS}[RP]{M(Oxidation (M))|F}V{I|L};[VP]{M(Oxidation (M))|F}[RV][DG]V{I|L} 5.4121;4.7104;4.1844;3.4827;3.2087;2.8409;2.5625;2.507;2.3164;2.1392 +;-;-;-;-;-;-;-;-;- + 986 NaN NaN 300378.4 NaN 9382 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12200 56.189 NaN 873240 35 0 93309 0.261 + 4735 EYSKYLQQAF 10 86 638.8141371141248 1275.6137212950496 2 638.8142700195312 MULTI HCD FTMS 0 0 0 12196 625702.1875 0.6857928578792571 3 -0.07324600219726562 4 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 119.6023987664813 3.9341629312194635E-05 1 [YE]SKY{I|L}GAQA{M(Oxidation (M))|F} 11 2 + 120.35 0 0 9.4344 9.4344 88.685 0 0 0 0.4845500650402812 16.575773191777927 0.4845500650402812 0.4845500650402812 0 3.0669015600442577 1.3010299956639813 3.353917193908117 0 [YE]SKY{I|L}GAQA{M(Oxidation (M))|F};[YT]DKY{I|L}GAQA{M(Oxidation (M))|F};[YE]SKY{I|L}QQA{M(Oxidation (M))|F};[YT]DKY{I|L}QQA{M(Oxidation (M))|F};[YE]SKY{I|L}GA[AG]A{M(Oxidation (M))|F};[YT]DKY{I|L}GA[AG]A{M(Oxidation (M))|F};[YE]SKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YT]DKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YE]S{I|L}[YK]GAQA{M(Oxidation (M))|F};[YT]D{I|L}[YK]GAQA{M(Oxidation (M))|F} 9.4344;9.3964;8.9189;8.8809;8.7188;8.6808;8.2005;8.1625;7.4696;7.4317 -;-;+;-;-;-;-;-;-;- + 6100 NaN NaN 217334.3 NaN 9383 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12201 56.193 NaN 1048600 35 0 88492 0.261 + -1 LMEQDMVSW 9 116 577.7478720388558 NaN 0 577.7644653320312 PEAK HCD FTMS 0 0 0 12196 95189.2109375 0.47808293601054963 1 -0.024440765380859375 5 Oxidation (M) _LM(Oxidation (M))EQDMVSW_ REV__MAD1L1|p.R179L|1|0.29|ENSG00000002822|chr7:2219392-2219392|C/A|missense_variant 8.593279151180031 0.2536050107310812 1 E 1 -1 6.8667 0 0 0.5953 0 0 73.99386736919003 947.3964823033602 1021.3903496725503 0 0 0 0 0 0 0 0.28872548999643577 0 E 0.5953 + + 176 + NaN NaN 265356.3 NaN 9384 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12202 56.196 NaN 344490 35 0 33860 0.261 -1 MAGSFCWRML 10 77 609.2654016209628 1216.5162503087256 2 609.2647705078125 MULTI HCD FTMS 0 0 0 12196 159534.859375 1 0 0 6 Oxidation (M) _M(Oxidation (M))AGSFCWRML_ nc|ENSG00000109685|O96028-2|NSD2 12.240655878213236 0.39661705172222156 1 SG{[CP]|[EA]} 4 -1 28.698 0 0 2.359 0 0 854.3937965507163 0 854.3937965507163 0 13.240312677277187 0 0 0 1.25 0 0 0 SG{[CP]|[EA]} 2.359 - 272 + NaN NaN 147713.2 NaN 9385 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12203 56.199 NaN 579700 35 0 132220 0.261 + 31520 VYGFVREAL 9 75 527.2905527680153 1052.5665526028306 2 527.2901000976562 MULTI HCD FTMS 0 0 0 12196 216723.625 0.3467150153671037 -4 0.10066604614257812 7 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 70.33199760932243 0.0089807860198535 1 [YV]G{M(Oxidation (M))|F}VREA{I|L} 9 0 + 86.666 0 0 8.2337 8.2337 87.398 0 0 0 0.9691001300805624 0.9691001300805624 0.9691001300805624 0.9691001300805624 0 2.3807196863200843 2 0.3807196863200844 0 + + [YV]G{M(Oxidation (M))|F}VREA{I|L};VYG{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}RVEA{I|L};[YV]G{M(Oxidation (M))|F}R{[CP]|[EA]}V{I|L};[YV][R{M(Oxidation (M))|F}]GVEA{I|L};[YV][{M(Oxidation (M))|F}V]GREA{I|L};VY[KP]V[YR]E;[YV][R{M(Oxidation (M))|F}]G{[CP]|[EA]}V{I|L};[YV][KP][RD]Y{I|L};[YV][PS]{[NV]|[RG]}YV{I|L} 8.2337;8.1417;7.5914;6.1876;5.7883;5.3836;4.7935;4.3844;4.1508;3.7421 +;+;-;-;-;-;-;-;-;- + 463 NaN NaN 176268.7 NaN 9386 2815 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12205 56.204 NaN 3305600 35 0 255240 0.327 + 17835 MHSSIEAVSSM 11 146 589.7601057528578 1177.5056585725156 2 589.7591552734375 MULTI HCD FTMS 0 0 0 12204 2363663 0.9534800580197078 2 -0.04880523681640625 1 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 47.748688679222035 0.09066307675719942 1 {[MS]|[{M(Oxidation (M))|F}A]}SVYTSVSD 10 -1 75.832 0 0 6.44 0 0 0 118.00535079976581 118.00535079976581 9.050118948789716 0 0 0 0 2.7588643834802156 0.721246399047171 1.9392653074926047 0 {[MS]|[{M(Oxidation (M))|F}A]}SVYTSVSD 6.44 - 29126 NaN NaN 598384.7 NaN 9387 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12206 56.208 NaN 1735900 35 0 248290 0.262 + 15756 LPFPKDASL 9 108 494.2791154303076 986.5436779274153 2 494.2792663574219 MULTI HCD FTMS 0 0 0 12204 1492824.875 0.8484344533783005 2 -0.04880523681640625 2 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 74.19965305603844 0.007729275404663812 1 [{I|L}P]{M(Oxidation (M))|F}PKDAS{I|L} 9 0 + 71.155 0 0 7.2126 7.2126 86.227 0 0 0 1.9897000433601875 14.973024840566467 1.9897000433601875 1.9897000433601875 0 2.1307196863200843 1.5228787452803376 0.3807196863200844 0 + + [{I|L}P]{M(Oxidation (M))|F}PKDAS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PKDAS{I|L};[{I|L}P]{M(Oxidation (M))|F}[NS]S{I|L}P{I|L};[{I|L}P]{M(Oxidation (M))|F}[NS]SP{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NS]S{I|L}P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NS]SP{I|L}{I|L};{I|L}P{M(Oxidation (M))|F}[PA][K{I|L}]{[DS]|[MA]|[CV]|TT};[{I|L}P]{M(Oxidation (M))|F}[NS][{I|L}P]S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NS][{I|L}P]S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VP][SG]{I|L}AS{I|L} 7.2126;7.0109;5.8388;5.7585;5.6372;5.5568;5.0209;4.7024;4.5007;3.3881 +;-;-;-;-;-;-;-;-;- + 1649 NaN NaN 344683.7 NaN 9388 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12207 56.212 NaN 1839600 35 0 155150 0.261 + 18249 MPDVDLHL 8 107 478.2313836346678 954.4482143361356 2 478.2313537597656 MULTI HCD FTMS 0 0 0 12204 1074878.375 0.9176346762586703 4 -0.10771942138671875 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 137.58523961978855 0.05160782114563498 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 72.829 0 0 7.6305 7.6305 87.914 0 0 0 4.065535041648388 4.065535041648388 4.065535041648388 4.065535041648388 0 2.2614393726401687 0 1.8098943791441968 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{M(Oxidation (M))|F}PE{[CP]|[EA]}{I|L}H{I|L};[H{I|L}]{I|L}{[MS]|[{M(Oxidation (M))|F}A]}EPE;{[CT]|[{M(Oxidation (M))|F}G]}S{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[VS]KDC{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[KG]E 7.6305;7.2045;5.1879;3.891;3.1801;1.9477;1.6386;1.6258;1.2769;1.244 +;+;-;-;-;-;-;-;-;- + 1505 NaN NaN 362365.2 NaN 9389 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12208 56.215 NaN 1259000 35 0 140920 0.261 + 16722 LYANMFERL 9 92 586.7918830476151 1171.56921316203 2 586.7916259765625 MULTI HCD FTMS 0 0 0 12204 470114.25 0.6601247701204654 5 -0.14254379272460938 4 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 148.26817274609934 1.0657023776783114E-05 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 114.08 0 0 9.7375 9.7375 93.598 0 0 0 102.790456128172 11.509461452434238 11.509461452434238 9.208187539523749 0 2.822682509756042 2 1.0189301784845295 0.9802046884880937 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}[{I|L}T]H{[HG]|PP};[Y{I|L}]Y[RD]N{[ES]|[DT]|[{I|L}C]}{I|L};[Y{I|L}]Y[C(Carbamidomethyl (C))R]E[VG]{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N[{I|L}T]H{[HG]|PP} 9.7375;8.9516;8.5279;7.4365;6.568;5.8015;4.8934;4.4909;4.0387;3.802 +;-;+;-;-;-;-;-;-;- + 978 + NaN NaN 292832.1 NaN 9390 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12209 56.219 NaN 628430 35 0 64010 0.261 -1 RTGIPISMSL 10 91 545.7984837387095 NaN 0 545.7822875976562 PEAK HCD FTMS 0 0 0 12204 19353.33984375 0.8182921545062591 -3 0.07976150512695312 5 Oxidation (M) _RTGIPISM(Oxidation (M))SL_ ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21 13.042465956692817 0.3290217458104555 1 TVT{I|L} 4 -1 12.952 0 0 1.1887 0 0 64.0722055111922 608.2514742486936 672.3236797598859 0 0 0 0 0 0 0 0.3054621874040891 0 TVT{I|L} 1.1887 - 453 + NaN NaN 174241.6 NaN 9391 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12210 56.222 NaN 1003300 35 0 166130 0.261 + 28072 TGTPRNNASPA 11 95 543.2699493351529 1084.5253457371057 2 543.28515625 MULTI HCD FTMS 0 0 0 12204 163678.640625 0.5018305158211639 2 -0.04880523681640625 6 Unmodified _TGTPRNNASPA_ ENST00000487544.1_1_X:43703754-43741674:-|nuORF 11.494710602746466 0.35692862141139436 1 {I|L}HQT{M(Oxidation (M))|F}[YQ] 7 11 32.267 0 0 2.9753 0 0 149.07669773232243 0 149.07669773232243 0 0.2945477876896483 0 0 0 0 0 0 0.3807196863200844 {I|L}HQT{M(Oxidation (M))|F}[YQ] 2.9753 - 1471 + NaN NaN 241346.8 NaN 9392 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12211 56.225 NaN 450240 35 0 65951 0.261 + 34485 YPFKNDEVLP 10 74 611.311258355555 1220.6079637779098 2 611.310546875 MULTI HCD FTMS 0 0 0 12204 273316.1875 1 0 0 7 Unmodified _YPFKNDEVLP_ ENSG00000163877|ENST00000296215|SNIP1 23.789781309258295 0.28859042913526417 1 EV{I|L}P 4 6 34.469 0 0 2.8239 0 0 764.3455677716812 0 764.3455677716812 0 24.011459692238688 0 0 0 0.5 0 0.3807196863200844 0 + EV{I|L}P 2.8239 + + 28 NaN NaN 152484.8 NaN 9393 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12212 56.229 NaN 857720 35 0 63182 0.261 + 4559 EYLKVDAQF 9 123 556.7866997522608 1111.5588465713215 2 556.784912109375 MULTI HCD FTMS 0 0 0 12204 205609.546875 0.9636459222630802 -1 0.024440765380859375 8 Unmodified _EYLKVDAQF_ ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant 89.40071534611396 0.0045416704840156395 1 [YE]{I|L}KVDAQ{M(Oxidation (M))|F} 9 0 + 66.554 0 0 5.9874 5.9874 90.261 0 0 0 31.469880604567408 14.973024840566474 14.973024840566474 15.362427068383198 0 0.9308845489566889 1.0969100130080565 0 1.5743923658886185 + + [YE]{I|L}KVDAQ{M(Oxidation (M))|F};[Y{I|L}]EKVDAQ{M(Oxidation (M))|F};[YE]{I|L}[WR]AQ{M(Oxidation (M))|F};[YG][KG]KVDAQ{M(Oxidation (M))|F};[YE]{I|L}KVDA[AG]{M(Oxidation (M))|F};[YE]{I|L}K{[RE]|[WV]}Q{M(Oxidation (M))|F};[YE]{I|L}KV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[DS]|[MA]|[CV]|TT};[YE]{I|L}KV[TA]S{[DS]|[MA]|[CV]|TT};{[DS]|[MA]|[CV]|TT}S{I|L}{I|L}VDA[RH];[YG]NTRRAQ{M(Oxidation (M))|F} 5.9874;4.6054;4.2665;4.085;4.0353;3.6812;3.2479;3.122;3.0886;3.0483 +;-;-;-;-;-;-;-;-;- + 4033 + NaN NaN 215262.2 NaN 9394 2816 12204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12214 56.233 NaN 1485800 35 0 323410 0.327 + 1033 AYGHFSYEF 9 102 560.7409098772953 1119.4672668213905 2 560.7412109375 MULTI HCD FTMS 0 0 0 12213 864521.8125 0.4376993757055636 -3 0.08640670776367188 1 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 137.58523961978855 0.00014495867019203413 1 {M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 5 4 66.37 0 0 5.9287 0 0 428.1808710989189 0 428.1808710989189 0 38.76354880917634 0 0 0 1.6861818737241734 0 1.1549471895720984 0 + {M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 5.9287 + + 3987 NaN NaN 309391.2 NaN 9395 2817 12213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12215 56.238 NaN 459730 35 0 32498 0.261 + 34370 YPEGFEIHSM 10 103 605.2649742128226 1208.5153954924451 2 605.2656860351562 MULTI HCD FTMS 0 0 0 12213 90359.21875 0.5536409398221989 -1 0.0293121337890625 2 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 71.92227651296345 0.015307609975375192 1 YPEG[WQ]VV[EC] 10 6 + 45.423 0 0 3.7586 3.7586 79.973 0 0 0 14.697406590487873 0.1372331288975559 0.1372331288975559 0.7918124604762511 0 0.6237125054200234 1.6989700043360187 0.7302046884880937 0 YPEG[WQ]VV[EC];YPEP[C(Carbamidomethyl (C))N]VA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YPEG[WQ]VA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]PQ{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[HK]{M(Oxidation (M))|F}EPY;Y[WH][WY]H{[MS]|[{M(Oxidation (M))|F}A]};Y[EP]P[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]P[AG]{[QD]|[EN]|[WG]|[KD]|[RS]};{[YD]|[{M(Oxidation (M))|F}M]}AV[C(Carbamidomethyl (C))N]PQ{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YY{[QS]|[NT]}AS{[QC]|[C(Carbamidomethyl (C))A]} 3.7586;3.6931;3.1147;2.5552;2.2539;2.0108;1.8745;1.5041;1.3611;1.3288 -;-;-;-;-;-;-;-;-;- 2236 + NaN NaN 157651.8 NaN 9396 2817 12213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12216 56.241 NaN 1482500 35 0 274420 0.263 + 7838 FYRSTAPS 8 100 464.72986177461325 927.4451706160265 2 464.7306213378906 MULTI HCD FTMS 0 0 0 12213 73097.7734375 0.41825376950801024 3 -0.07840728759765625 3 Unmodified _FYRSTAPS_ ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000116990|P12524-3|MYCL 78.14939416004806 0.020287975522436184 1 SVSTDR{M(Oxidation (M))|F} 7 6 80.309 0 0 8.6592 0 0 0 132.0455721490844 132.0455721490844 34.76669697386052 0 0 0 0 1.5 1.154901959985743 1.6549471895720984 0 SVSTDR{M(Oxidation (M))|F} 8.6592 - 1553 + NaN NaN 308553.8 NaN 9397 2817 12213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12217 56.245 NaN 221400 35 0 19115 0.261 -1 0 61 424.08158163941823 NaN 0 424.0812072753906 PEAK HCD FTMS 0 0 0 12213 81493.109375 0.5046960734402619 351 -9.125717163085938 4 NaN NaN 1 V 1 -1 5.4846 0 0 0.64818 0 0 164.81687959996538 579.2403412131035 744.0572208130689 0 0 0 0 0 0 0 0 0 V 0.64818 - 3 + NaN NaN 114704.6 NaN 9398 2817 12213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12218 56.248 NaN 210660 35 0 10915 0.261 + -1 HCCGCCFICI 10 64 405.81444460181115 NaN 0 405.8140869140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))C(Carbamidomethyl (C))GCCFICI_ REV__ENSG00000105697|ENST00000222304|HAMP 2.0860074813731053 0.33839895573887124 1 {M(Oxidation (M))|F}{I|L} 2 -1 9.464 0 0 1.1689 0 0 117.21375317517307 429.2260836236938 546.4398367988668 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.1689 + + 17 + NaN NaN 118535.4 NaN 9399 2817 12213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12220 56.253 NaN 652100 35 0 78091 0.327 + 8020 GGEWPKEQSW 10 86 602.274928580379 1202.5353042275578 2 602.275146484375 MULTI HCD FTMS 0 0 0 12219 343889.46875 0.5831388294240194 3 -0.09373855590820312 1 Unmodified _GGEWPKEQSW_ REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF 19.361941925380144 0.3300069447713393 1 GSVS[YT]VSW 9 -1 63.84 0 0 5.3088 0 0 218.05619153400158 0 218.05619153400158 0 49.887372032135886 0 0 0 2.2302046884880937 0 1.1237125054200234 0 GSVS[YT]VSW 5.3088 - 1092 + NaN NaN 195353.4 NaN 9400 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12221 56.257 NaN 992200 35 0 123910 0.261 + -1 CKGPDYDDCL 10 90 593.2303001482842 1184.4460473633683 2 593.23046875 MULTI HCD FTMS 0 0 0 12219 221694.96875 0.4205804906077474 3 -0.09373855590820312 2 Carbamidomethyl (C) _CKGPDYDDC(Carbamidomethyl (C))L_ REV__KCNF1|p.R75C|1|0.17|ENSG00000162975|chr2:10912649-10912649|C/T|missense_variant 9.38312468134398 0.42334543440173333 1 [{I|L}V][C(Carbamidomethyl (C))S]D 5 -1 19.577 0 0 1.6529 0 0 0 607.1696551116682 607.1696551116682 3.831721486966373 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}V][C(Carbamidomethyl (C))S]D 1.6529 - 69 NaN NaN 236065.5 NaN 9401 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12222 56.261 NaN 666870 35 0 52965 0.261 + 30853 VQNSIPCVEI 10 105 551.2833600186924 NaN 0 551.2649536132812 PEAK HCD FTMS 0 0 0 12219 28507.591796875 0.873912689961925 -4 0.10589981079101562 3 Unmodified _VQNSIPCVEI_ REV__ENSG00000093072|ENST00000399837|ADA2;REV__nc|ENSG00000093072|Q9NZK5-2|ADA2 17.11289562659939 0.30402175129113823 1 QVS 3 -1 16.216 0 0 1.4735 0 0 132.09817096641433 651.2911471002561 783.3893180666705 0 0 0 0 0 0 0 0.9049471895720985 0 QVS 1.4735 - 600 + NaN NaN 192218 NaN 9402 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12223 56.264 NaN 391820 35 0 61126 0.261 + 26578 SVSHPFSVN 9 55 487.2405973846136 972.4666418360272 2 487.2406005859375 MULTI HCD FTMS 0 0 0 12219 295391.28125 0.5911389823601768 4 -0.1132354736328125 4 Unmodified _SVSHPFSVN_ REV__nc|ENSG00000100987|Q9NZR4-2|VSX1;REV__nc|ENSG00000100987|Q9NZR4-3|VSX1 30.636539890814138 0.10832830463492794 1 STSVN 5 -1 60.745 0 0 6.2465 0 0 466.2336095907474 0 466.2336095907474 0 46.79506561578833 0 0 0 1.6549471895720984 0 0.9247425010840047 0 STSVN 6.2465 - 242 NaN NaN 142393.9 NaN 9403 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12224 56.267 NaN 920980 35 0 80300 0.261 + 5377 FGNRDYVIL 9 105 548.7931540571892 1095.5717551811783 2 548.79345703125 MULTI HCD FTMS 0 0 0 12219 393308.84375 0.4510522416243307 -4 0.10589981079101562 5 Unmodified _FGNRDYVIL_ REV__ENSG00000103365|ENST00000309859|GGA2 37.97399986684836 0.07464525285885698 1 {I|L}TNW 4 -1 63.488 0 0 5.7949 0 0 563.3077782716 0 563.3077782716 0 40.86310953731086 0 0 0 1.9247425010840047 0 0.805462187404089 0.4247425010840047 {I|L}TNW 5.7949 - 853 NaN NaN 216693 NaN 9404 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12225 56.271 NaN 536680 35 0 43472 0.261 + 18146 MPDGQFKDISL 11 91 633.8069866554331 1265.599420377666 2 633.8056030273438 MULTI HCD FTMS 0 0 0 12219 318188.90625 0.5308058944946883 -9 0.22953033447265625 6 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 76.41605946988834 0.009108940929514408 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 78.409 0 0 6.1954 6.1954 91.895 0 0 0 4.981979378655865 67.96321075614894 4.981979378655865 26.109243748081774 0 2.504432191740108 0 1.916386562212267 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KS{I|L}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}E[KA]{M(Oxidation (M))|F}D{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}D[DN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}S{I|L};[{M(Oxidation (M))|F}V]{I|L}S[HT]T{[{M(Oxidation (M))|F}D]|MM}S{I|L};[{M(Oxidation (M))|F}V]{I|L}S[DN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}S{I|L};{[YD]|[{M(Oxidation (M))|F}M]}H{[VA]|[{I|L}G]}VT{[{M(Oxidation (M))|F}D]|MM}S{I|L};{[YD]|[{M(Oxidation (M))|F}M]}H[R{I|L}]T{[{M(Oxidation (M))|F}D]|MM}S{I|L};{[YD]|[{M(Oxidation (M))|F}M]}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}S{I|L};[{M(Oxidation (M))|F}V]{I|L}S[DN]{M(Oxidation (M))|F}[QP]S{I|L} 6.1954;4.1324;2.2932;1.6586;1.1094;1.0816;0.99389;0.95002;0.92228;0.82567 +;-;-;-;-;-;-;-;-;- + 571 NaN NaN 166715.3 NaN 9405 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12226 56.274 NaN 288990 35 0 29663 0.263 + 1966 DAIRDAEIL 9 65 508.2746003872821 1014.5346478413642 2 508.27490234375 MULTI HCD FTMS 0 0 0 12219 137203.40625 0.10402968051568477 9 -0.24732208251953125 7 Unmodified _DAIRDAEIL_ ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 27.223235318498237 0.1251536255799991 1 WE{I|L}{I|L} 4 6 39.407 0 0 3.8843 0 0 455.2496815412125 0 455.2496815412125 0 25.721536552253866 0 0 0 0.7887254899964358 0 0.3807196863200844 0 WE{I|L}{I|L} 3.8843 - 49 NaN NaN 123214.8 NaN 9406 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12227 56.277 NaN 183920 35 0 12947 0.261 -1 AMQRPCLSCP 10 66 618.2700557534544 1234.5255585737086 2 618.2701416015625 MULTI HCD FTMS 0 0 0 12219 83686.796875 0.49953413107751427 3 -0.09373855590820312 8 2 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))QRPC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))P_ ENST00000567874.5_1_16:90015852-90021630:+|nuORF 9.38312468134398 0.42334543440173333 1 S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3 -1 16.127 0 0 1.3063 0 0 872.404414023815 0 872.404414023815 0 3.9215905896025323 0 0 0 0.5 0 0.3054621874040891 0 S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.3063 + + 41 NaN NaN 119063.2 NaN 9407 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12228 56.281 NaN 264580 35 0 23060 0.262 + 29392 TYQLGFHSI 9 62 533.2717279004444 1064.5289028676887 2 533.2719116210938 MULTI HCD FTMS 0 0 0 12219 104726.609375 0.8754610372990644 -2 0.04880523681640625 9 Unmodified _TYQLGFHSI_ ENSG00000142507|ENST00000270586|PSMB6 86.33184430468982 0.004622086694044132 1 [YT]Q{I|L}G{M(Oxidation (M))|F}H{[TV]|[{I|L}S]} 9 0 + 88.988 0 0 8.3594 8.3594 93.999 0 0 0 81.541068762089 14.51976140907405 14.51976140907405 13.455612550363796 0 2.1989700043360187 2 1.086696871556164 0.4247425010840047 + + [YT]Q{I|L}G{M(Oxidation (M))|F}H{[TV]|[{I|L}S]};[YT][AG]{I|L}G{M(Oxidation (M))|F}H{[TV]|[{I|L}S]};{[MS]|[{M(Oxidation (M))|F}A]}{[CA]|SS}{I|L}G{M(Oxidation (M))|F}H{[TV]|[{I|L}S]};{[NV]|[RG]}Q{[MS]|[{M(Oxidation (M))|F}A]}{[WT]|[RM]}{[TV]|[{I|L}S]} 8.3594;7.0954;3.7782;0.92936 +;-;-;- + 192 + NaN NaN 121944 NaN 9408 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12229 56.284 NaN 93525 35 0 16668 0.262 -1 0 43 437.23493094283594 436.22765447623595 1 437.2357482910156 MULTI HCD FTMS 0 0 0 12219 62752.66796875 0.002016886875704434 67 -1.8462600708007812 10 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101451.6 NaN 9409 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12230 56.287 NaN 133760 35 0 9256.6 0.262 + -1 NMMYATSHFW 10 56 440.5094703131933 NaN 0 440.58306884765625 PEAK HCD FTMS 0 0 0 12219 9943.857421875 0.27404729331700434 -4 0.10589981079101562 11 2 Oxidation (M) _NM(Oxidation (M))M(Oxidation (M))YATSHFW_ REV__UNC79|p.D542N|1|0.6|ENSG00000133958|chr14:93542565-93542565|G/A|missense_variant 2.0860074813731053 0.33839895573887124 1 HV 2 -1 7.9588 0 0 0.90543 0 0 456.7891714929511 183.05649744205314 639.8456689350043 0 0 0 0 0 0 0 0 0 HV 0.90543 - 10 + NaN NaN 112945.6 NaN 9410 2818 12219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12232 56.292 NaN 1544700 35 0 266870 0.327 + 32162 VYSPHVLNL 9 99 521.2900658082605 1040.5655786833208 2 521.2901000976562 MULTI HCD FTMS 0 0 0 12231 736448.75 0.45791426831757337 3 -0.07385635375976562 1 Unmodified _VYSPHVLNL_ DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;ENSG00000079805|ENST00000389253|DNM2;ENSG00000106976|ENST00000372923|DNM1;ENSG00000197959|ENST00000627582|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;nc|ENSG00000106976|Q05193-2|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3 122.17920374332846 0.0010792739174387011 1 VYSPHV{I|L}N{I|L} 9 0 + 92.208 0 0 8.8613 8.8613 98.009 0 0 0 68.17918449261214 10.756886463274284 10.756886463274284 65.01979729363555 0 2.385151878060192 1.6989700043360187 0.7302046884880937 0.3252574989159953 + + VYSPHV{I|L}N{I|L};[PS][YV]HV{I|L}N{I|L};[R{M(Oxidation (M))|F}][KA][RH]N{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RN]{I|L}{I|L}Y{I|L} 8.8613;2.6128;0.69582;0.4763 +;-;-;- + 946 + NaN NaN 320397 NaN 9411 2819 12231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12233 56.297 NaN 2755600 35 0 317970 0.261 + 15446 LPDLEGRTHIF 11 105 433.234493428227 1296.681650884881 3 433.2347106933594 MULTI HCD FTMS 0 0 0 12231 881778.125 0.7864932839139046 -2 0.058872222900390625 2 Unmodified _LPDLEGRTHIF_ ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 44.20668130422581 0.10985770963127467 1 {I|L}PY{[RE]|[WV]}A{M(Oxidation (M))|F}RV 9 7 68.527 0 0 5.2848 0 0 0 162.05605493717033 162.05605493717033 36.253672211068576 0 0 0 0 0.805462187404089 1.3010299956639813 1.0387254899964358 0.3252574989159953 {I|L}PY{[RE]|[WV]}A{M(Oxidation (M))|F}RV 5.2848 - 1587 + NaN NaN 499360.2 NaN 9412 2819 12231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12234 56.3 NaN 236260 35 0 23466 0.261 -1 VMAPRTLLL 9 57 515.3098793642871 1028.605205795374 2 515.3102416992188 MULTI HCD FTMS 0 0 0 12231 61922.6328125 0.13738416607757095 16 -0.4244842529296875 3 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 1 AD{I|L} 3 -1 33.188 0 0 3.2265 0 0 711.4642649411255 0 711.4642649411255 0 19.69273760456403 0 0 0 1 0 0 0 AD{I|L} 3.2265 - 45 NaN NaN 124083.4 NaN 9413 2819 12231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12235 56.304 NaN 358650 35 0 58607 0.261 -1 VQPNEAVYTKM 11 68 648.3201541538643 NaN 0 648.3400268554688 PEAK HCD FTMS 0 0 0 12231 13657.15234375 0.9146330440892801 1 -0.019535064697265625 4 Oxidation (M) _VQPNEAVYTKM(Oxidation (M))_ ENSG00000160211|ENST00000393562|G6PD;ENST00000490651.1_1_X:153760401-153761015:-|nuORF;nc|ENSG00000160211|P11413-2|G6PD;nc|ENSG00000160211|P11413-3|G6PD 12.174745833636585 0.30758389568133715 1 VR{M(Oxidation (M))|F}AE 5 -1 20.846 0 0 1.6102 0 0 165.03643493281407 524.2474459283811 689.2838808611953 0 0 0 0 0 0.25 0 1.0356668758921828 0.3252574989159953 VR{M(Oxidation (M))|F}AE 1.6102 - 151 + NaN NaN 144534.8 NaN 9414 2819 12231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12236 56.307 NaN 224640 35 0 79621 0.264 + 6713 FPPSDEQL 8 59 466.72169359604015 931.4288342588803 2 467.2236328125 MULTI HCD FTMS 0 0 0 12231 10687.427734375 0.22173401058835687 -7 0.18062973022460938 5 Unmodified _FPPSDEQL_ nc|ENSG00000211592|P01834|IGKC 15.847184025352803 0.47719562709667024 1 {[QN]|[E{I|L}]|[KN]}WDEQ{I|L} 7 4 + 35.762 0 0 3.8395 3.8395 85.393 0 0 0 3.801704218672519 21.15774551984053 3.801704218672519 9.33053210369387 0 0.4247425010840047 0 0 0 {[QN]|[E{I|L}]|[KN]}WDEQ{I|L};{[QN]|[E{I|L}]|[KN]}WDE[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PA]DEQ{I|L};{[QN]|[E{I|L}]|[KN]}E[WD]Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PA]DE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}E[WD][AG]{I|L} 3.8395;2.8377;2.5995;2.2214;1.6051;1.2197 -;-;-;-;-;- 91 NaN NaN 122114.3 NaN 9415 2819 12231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12238 56.312 NaN 16267000 35 0 2634400 0.327 -1 DPRNATSVCI 10 106 566.7738872279571 1131.533221522714 2 566.7737426757812 MULTI HCD FTMS 0 0 0 12237 10915268 0.25446127383333245 6 -0.15896987915039062 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 1 P{M(Oxidation (M))|F}STSVSW 8 -1 87.957 0 0 7.7732 0 0 222.09832908282982 0 222.09832908282982 0 58.06093158795967 0 0 0 2.774227503252014 0 1.9604093769761874 0 P{M(Oxidation (M))|F}STSVSW 7.7732 - 6846 + NaN NaN 569386.7 NaN 9416 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12239 56.316 NaN 4966700 35 0 482160 0.193 + 5405 FHATTSEVSW 10 120 582.7692560816736 1163.523959230147 2 582.7693481445312 MULTI HCD FTMS 0 0 0 12237 3379274.5 0.35950600716698233 6 -0.15896987915039062 2 Unmodified _FHATTSEVSW_ ENSG00000155380|ENST00000369626|SLC16A1;nc|ENSG00000155380|P53985-2|SLC16A1 37.97399986684836 0.1629881689457739 1 SVSTYVSW 8 6 100.46 0 0 8.6337 0 0 236.07849459669427 0 236.07849459669427 0 65.50147949840337 0 0 0 3.2346368802282015 0 2.0253187046026264 0 SVSTYVSW 8.6337 - 14142 + NaN NaN 502105.6 NaN 9417 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12240 56.319 NaN 3817800 35 0 331490 0.253 + 31036 VSSMTSCYLR 10 136 573.7657539071055 1145.5169548810109 2 573.7633666992188 MULTI HCD FTMS 0 0 0 12237 2022617.125 0.2948671844220008 6 -0.15896987915039062 3 Unmodified _VSSMTSCYLR_ ENST00000192788.5_1_6:34844358-34844442:+|nuORF 47.594388314883695 0.08653821083322558 1 HSVSTYVSW 9 8 98.661 0 0 8.6128 0 0 81.03776402588899 0 81.03776402588899 0 51.941518947708325 0 0 0 3.385151878060192 0 1.9991348669726232 0 HSVSTYVSW 8.6128 - 20053 + NaN NaN 644238.5 NaN 9418 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12241 56.322 NaN 1445000 35 0 363900 0.261 + 28998 TYDYNFHSF 9 105 597.2486620026949 1192.4827710721897 2 597.248779296875 MULTI HCD FTMS 0 0 0 12237 1000242.375 0.5457203150471078 5 -0.13615036010742188 4 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 136.39213081522345 0.00021731600835925866 1 [YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 9 0 + 103.41 0 0 8.6722 8.6722 89.985 0 0 0 5.059282961593624 5.059282961593624 5.059282961593624 5.059282961593624 0 2.25 2 1.024227503252014 1.110924374808178 + + [YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DG[YG]{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TG[YG]{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{[WN]|[YH]}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 8.6722;8.2479;7.088;6.9684;6.716;6.1195;5.3842;5.1317;4.7385;4.4157 +;+;-;-;-;-;-;-;-;- + 5204 NaN NaN 305934.1 NaN 9419 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12242 56.325 NaN 979720 35 0 172520 0.262 + 30657 VPDPNVIKL 9 80 497.8001966216024 993.5858403100049 2 497.8003845214844 MULTI HCD FTMS 0 0 0 12237 503000.15625 0.6242336696396354 4 -0.10337066650390625 5 Unmodified _VPDPNVIKL_ ENSG00000157349|ENST00000288071|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B 65.47368725323818 0.010552856507075443 1 VPDPNV{I|L}K{I|L} 9 0 + 79.336 0 0 7.9848 7.9848 88.446 0 0 0 4.059808447264416 4.059808447264416 4.059808447264416 4.059808447264416 0 2.517220322351953 1.5228787452803376 0.2614393726401688 0.28872548999643577 + + VPDPNV{I|L}K{I|L};[VP]DNPV{I|L}K{I|L};[DP]VNPV{I|L}K{I|L};[VP]DNP{I|L}VK{I|L};[VP]NDPV{I|L}K{I|L};[VP]DGGPV{I|L}K{I|L};[VP]DN{I|L}PVK{I|L};[DP]VNP{I|L}VK{I|L};[VP]N{I|L}DPVK{I|L};[VP]NDP{I|L}VK{I|L} 7.9848;7.5762;6.7026;6.5928;6.5928;6.2977;6.1126;5.7192;5.6638;5.6093 +;-;-;-;-;-;-;-;-;- + 806 + NaN NaN 238940.3 NaN 9420 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12243 56.328 NaN 404560 35 0 76247 0.261 + 3471 EGEKGFDAI 9 64 483.23251539992305 964.4504778666461 2 483.232421875 MULTI HCD FTMS 0 0 0 12237 308322.375 0.9189818536237147 2 -0.0543212890625 6 Unmodified _EGEKGFDAI_ REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1 47.748688679222035 0.03472022231463587 1 {[DA]|[EG]}{I|L}{M(Oxidation (M))|F}[NS]DA{I|L} 9 -1 + 59.574 0 0 6.1769 6.1769 63.567 0 0 0 6.905367682672363 42.58385168277917 6.905367682672363 0 0 1 0 1.0387254899964358 0.7302046884880937 {[DA]|[EG]}{I|L}{M(Oxidation (M))|F}[NS]DA{I|L};{[DA]|[EG]}{I|L}[NS]{M(Oxidation (M))|F}DA{I|L};{[DA]|[EG]}S{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DA{I|L};{[DA]|[EG]}{I|L}{M(Oxidation (M))|F}TD[NG]{I|L};[KC]W{[ET]|[MV]}DA{I|L};{[DA]|[EG]}{I|L}T{M(Oxidation (M))|F}D[NG]{I|L};{[DA]|[EG]}{I|L}{M(Oxidation (M))|F}TDA{[NV]|[RG]};{[DA]|[EG]}{I|L}T{M(Oxidation (M))|F}DA{[NV]|[RG]} 6.1769;6.1769;5.6571;2.6821;2.6552;1.7457;1.3522;0.41586 -;-;-;-;-;-;-;- 166 NaN NaN 143281.2 NaN 9421 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12244 56.332 NaN 634410 35 0 74709 0.261 -1 SPCHIEMIL 9 76 529.7544000547612 1057.4942471763222 2 529.75390625 MULTI HCD FTMS 0 0 0 12237 187316.375 0.9339581094018764 -5 0.13216018676757812 7 Oxidation (M) _SPCHIEM(Oxidation (M))IL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 28.486842064014134 0.11819662193267319 1 {I|L}{M(Oxidation (M))|F}E{[CA]|SS}VV{M(Oxidation (M))|F} 8 -1 45.232 0 0 4.2772 0 0 131.09592506181633 0 131.09592506181633 0 22.324229892291484 0 0 0 0.8494850021680094 0 0.6382104921644451 0 {I|L}{M(Oxidation (M))|F}E{[CA]|SS}VV{M(Oxidation (M))|F} 4.2772 - 638 + NaN NaN 173983.9 NaN 9422 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12245 56.335 NaN 452040 35 0 93694 0.261 -1 0 72 553.278069282228 552.2707928156279 1 553.2803344726562 MULTI HCD FTMS 0 0 0 12237 186051 0.965478522775204 1 -0.034824371337890625 8 NaN NaN 1 [{I|L}P]D 3 -1 19.666 0 0 3.5609 0 0 0 224.08473259517794 224.08473259517794 1.7069622716897506 0 0 0 0 0 1.3979400086720375 0 0 [{I|L}P]D 3.5609 - 17 NaN NaN 167163.5 NaN 9423 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12246 56.338 NaN 635920 35 0 84256 0.263 + 24182 RYFDVGLHNF 10 65 423.2119709819561 1266.6140835460683 3 423.5466613769531 MULTI HCD FTMS 0 0 0 12237 141266.578125 0.9106469125138218 -2 0.0589141845703125 9 Unmodified _RYFDVGLHNF_ ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT 32.037481411007896 0.2145045983280644 1 VG[H{I|L}]N{M(Oxidation (M))|F} 6 4 33.148 0 0 2.6171 0 0 581.2594815030388 0 581.2594815030388 0 32.17925002484726 0 0 0 1.9247425010840047 0 0 0 + VG[H{I|L}]N{M(Oxidation (M))|F} 2.6171 + + 48 + NaN NaN 182218.2 NaN 9424 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12247 56.342 NaN 418930 35 0 24520 0.261 + 34371 YPEGFEIHSM 10 86 605.2649742128226 1208.5153954924451 2 605.75439453125 MULTI HCD FTMS 0 0 0 12237 56366.25 0.4268838463755864 7 -0.18840789794921875 10 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 62.57269311338072 0.03206542651389879 1 YPEP[C(Carbamidomethyl (C))N]VP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 + 39.548 0 0 3.2724 3.2724 79.244 0 0 0 0.21607284505704882 0.21607284505704882 0.21607284505704882 0.21607284505704882 0 0.6989700043360187 1.3979400086720375 0.9916440611282626 0 YPEP[C(Carbamidomethyl (C))N]VP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]PQ{[QD]|[EN]|[WG]|[KD]|[RS]};YPEG[WQ]VV[EC];YPEG[WQ]VP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[QA]GQVS{[QC]|[C(Carbamidomethyl (C))A]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KQ]CCPQ{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[QA][KC]Q{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]P[AG]{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[QA]GREPY;Y[EP]P[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]} 3.2724;3.2545;2.9279;2.694;2.4749;2.3035;2.2435;2.2034;2.1003;1.7288 -;-;-;-;-;-;-;-;-;- 1085 + NaN NaN 146666.1 NaN 9425 2820 12237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12249 56.347 NaN 1030400 35 0 254240 0.327 + 31521 VYGFVREAL 9 82 527.2905527680153 1052.5665526028306 2 527.2901611328125 MULTI HCD FTMS 0 0 0 12248 502546.6875 0.803975489424605 2 -0.048999786376953125 1 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 79.59630418116434 0.005983006570063981 1 VYG{M(Oxidation (M))|F}VREA{I|L} 9 0 + 89.389 0 0 8.4925 8.4925 87.775 0 0 0 0.9627904161617806 0.9627904161617806 0.9627904161617806 0.9627904161617806 0 2.8979400086720375 2 0.6307196863200843 0 + + VYG{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}RVEA{I|L};[YV]G{M(Oxidation (M))|F}R{[CP]|[EA]}V{I|L};[YV][R{M(Oxidation (M))|F}]GVEA{I|L};[YV]G{M(Oxidation (M))|F}VR[DV]V;[YV][{M(Oxidation (M))|F}V]GREA{I|L};[YV]G{M(Oxidation (M))|F}RV[DV]V;[YV]G{M(Oxidation (M))|F}R{[CP]|[EA]}{I|L}V;[YV]GPY{[QD]|[EN]|[WG]|[KD]|[RS]}V{I|L} 8.4925;8.401;7.7587;6.0203;5.9556;5.8041;5.4588;5.1618;4.9945;4.4372 +;+;-;-;-;-;-;-;-;- + 1118 + NaN NaN 248775.8 NaN 9426 2821 12248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12250 56.351 NaN 702530 35 0 81891 0.261 + 6962 FPVRDGVVL 9 88 501.2925655325258 1000.5705781318517 2 501.2926025390625 MULTI HCD FTMS 0 0 0 12248 331157.59375 0.3601838905154181 9 -0.24170684814453125 2 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 43.77239144664712 0.04802738721622131 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L} 9 2 + 44.777 0 0 4.4751 4.4751 83.245 0 0 0 10.162326625411765 30.312639135582543 10.162326625411765 6.020599913279625 0 1.3807196863200843 1.3979400086720375 0.28872548999643577 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD][VG]V{I|L};[{M(Oxidation (M))|F}V]P[RV][DG]V{I|L};{[TV]|[{I|L}S]}[YG][RP]PV{I|L};[{M(Oxidation (M))|F}V]P[RD][VG]V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS][RP]PV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS]G[VP]PV{I|L};[WR]{NN|[MP]|[D{I|L}]|[EV]}{[TV]|[{I|L}S]}V{I|L} 4.4751;3.8734;2.4546;2.3683;1.8528;1.6698;1.5449;0.95542 -;+;-;-;-;-;-;- + 317 NaN NaN 193325 NaN 9427 2821 12248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12251 56.355 NaN 1127100 35 0 165070 0.261 + 15654 LPEGIRPGTVL 11 108 576.3426159987267 1150.6706790642534 2 576.34228515625 MULTI HCD FTMS 0 0 0 12248 396263.1875 0.859451777480971 -1 0.034824371337890625 3 Unmodified _LPEGIRPGTVL_ ENSG00000178934|ENST00000314980|LGALS7B;ENSG00000205076|ENST00000378626|LGALS7 104.48436234954404 0.02107708310788311 1 {I|L}P{M(Oxidation (M))|F}K{I|L}RGE 8 6 81.073 0 0 7.0457 0 0 0 207.11385523013908 207.11385523013908 48.19696783106832 0 0 0 0 1.5 1.3010299956639813 0.9749073637206093 0.3494850021680094 {I|L}P{M(Oxidation (M))|F}K{I|L}RGE 7.0457 - 2903 + NaN NaN 254076.1 NaN 9428 2821 12248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12252 56.358 NaN 3295200 35 0 368700 0.261 + 21111 PNSTVVKAAAC 11 120 530.7753477476316 1059.536142562063 2 530.7930908203125 MULTI HCD FTMS 0 0 0 12248 99974.84375 0.8694856323471338 -1 0.034824371337890625 4 Unmodified _PNSTVVKAAAC_ REV__ENSG00000237651|ENST00000432605|C2orf74 18.1463463914782 0.2989727007011538 1 [NP]SVRE{M(Oxidation (M))|F}V 8 -1 61.906 0 0 5.8428 0 0 0 128.03667835078423 128.03667835078423 23.05306747644248 0 0 0 0 0 1.154901959985743 1.2000612056866313 2.4534021960761265 [NP]SVRE{M(Oxidation (M))|F}V 5.8428 - 2264 NaN NaN 583950.1 NaN 9429 2821 12248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12253 56.361 NaN 185860 35 0 15676 0.261 + 4736 EYSKYLQQAF 10 57 638.8141371141248 1275.6137212950496 2 638.814208984375 MULTI HCD FTMS 0 0 0 12248 109434.9375 0.11994475972638802 9 -0.24170684814453125 5 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 50.13029200064056 0.07731568956748922 1 E[Y{I|L}]QQA{M(Oxidation (M))|F} 7 3 60.226 0 0 4.7214 0 0 378.1899586408219 0 378.1899586408219 0 44.02835415434268 0 0 0 1.805462187404089 0 2.4247425010840047 0 E[Y{I|L}]QQA{M(Oxidation (M))|F} 4.7214 - 331 NaN NaN 112365.1 NaN 9430 2821 12248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12255 56.366 NaN 2390700 35 0 587710 0.327 + 1034 AYGHFSYEF 9 109 560.7409098772953 1119.4672668213905 2 560.7411499023438 MULTI HCD FTMS 0 0 0 12254 1710793.375 0.8661588190971343 2 -0.04904937744140625 1 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 188.07810791586144 5.235143272874112E-13 1 AY{[HG]|PP}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 9 0 + 98.259 0 0 8.7773 8.7773 94.921 0 0 0 42.083180127605345 16.478174818886373 16.478174818886373 14.827796776480469 0 2.8494850021680094 1.5228787452803376 2.2931576817365436 0 + + AY{[HG]|PP}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{[HG]|PP}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]HAYE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]HAEY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]HAY{M(Oxidation (M))|F}E;{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SEY{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}YAYE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SY{M(Oxidation (M))|F}E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]HYAE{M(Oxidation (M))|F} 8.7773;7.4528;6.1544;5.9141;5.2815;5.1192;5.0413;4.9957;4.8789;4.7398 +;-;-;-;-;-;-;-;-;- + 7931 + NaN NaN 446614.7 NaN 9431 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12256 56.371 NaN 1314100 35 0 98602 0.261 + 17836 MHSSIEAVSSM 11 118 589.7601057528578 1177.5056585725156 2 589.7591552734375 MULTI HCD FTMS 0 0 0 12254 760460.25 0.30676271672048067 8 -0.22220993041992188 2 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 39.94969957227396 0.1372740116928318 1 SV[YR]VS[EC] 8 -1 53.822 0 0 4.5709 0 0 236.07909445101558 0 236.07909445101558 0 28.61046901591578 0 0 0 2.385151878060192 0 1.5356668758921828 0 SV[YR]VS[EC] 4.5709 - 1919 + NaN NaN 285827 NaN 9432 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12257 56.374 NaN 1387400 35 0 124660 0.262 + 18250 MPDVDLHL 8 97 478.2313836346678 954.4482143361356 2 478.2313537597656 MULTI HCD FTMS 0 0 0 12254 649466.125 0.5544558819088236 10 -0.2756004333496094 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 137.58523961978855 0.05160782114563498 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 73.244 0 0 7.6739 7.6739 88.74 0 0 0 5.902117188610717 5.902117188610717 5.902117188610717 5.902117188610717 0 2.305462187404089 0 2.0626432252195626 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[YQ][VS]KDC{I|L};[YN]{[TV]|[{I|L}S]}KDC{I|L};{[TV]|[{I|L}S]}[YN]KDC{I|L};[KA]S{I|L}DV[YC(Carbamidomethyl (C))] 7.6739;7.0556;5.256;0.55705;0.47409;0.34319;0.17262 +;+;-;-;-;-;- + 879 NaN NaN 289145.1 NaN 9433 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12258 56.377 NaN 958540 35 0 127490 0.261 + 22264 QPDNIKALF 9 92 523.2877006753984 1044.5608484175966 2 523.2875366210938 MULTI HCD FTMS 0 0 0 12254 486870.34375 0.8382440845926573 -3 0.07385635375976562 4 Unmodified _QPDNIKALF_ ENSG00000105701|ENST00000608443|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318-3|FKBP8;nc|ENSG00000105701|Q14318|FKBP8 37.97399986684836 0.07464525285885698 1 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F} 9 2 + 42.828 0 0 4.1001 4.1001 82.615 0 0 0 -0.7672878367107216 14.634928107446186 -0.7672878367107216 5.752574989159946 0 0.3252574989159953 0 0 0.2742275032520141 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DN{I|L}KA{I|L}{M(Oxidation (M))|F};[NP]EGG{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DGG{I|L}KA{I|L}{M(Oxidation (M))|F};[KA]PA[VG][DG]A{I|L}{M(Oxidation (M))|F};[KA]PA[VG]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F};[NP]EN{I|L}K{M(Oxidation (M))|F}[{I|L}A];[KA]{I|L}[NP][DG]A{I|L}{M(Oxidation (M))|F};RR[NP]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F};[KA]{I|L}[NP]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F} 4.1001;3.5493;3.2185;2.6678;2.4645;2.1232;1.6126;1.4748;1.1866;1.1376 -;+;-;-;-;-;-;-;-;- + 964 + NaN NaN 230280.5 NaN 9434 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12259 56.381 NaN 364400 35 0 55881 0.261 + 34486 YPFKNDEVLP 10 61 611.311258355555 1220.6079637779098 2 611.3114013671875 MULTI HCD FTMS 0 0 0 12254 225535.984375 0.8251834128009706 6 -0.16014862060546875 5 Unmodified _YPFKNDEVLP_ ENSG00000163877|ENST00000296215|SNIP1 15.248480904072842 0.3684828712757339 1 {I|L}P 2 8 25.969 0 0 2.1276 0 0 992.460657681618 0 992.460657681618 0 20.48455006504028 0 0 0 0.5 0 0 0 + {I|L}P 2.1276 + + 24 NaN NaN 141031 NaN 9435 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12260 56.384 NaN 287450 35 0 39413 0.262 + 15757 LPFPKDASL 9 55 494.2791154303076 986.5436779274153 2 494.2789306640625 MULTI HCD FTMS 0 0 0 12254 142352.75 0.08090498735368934 8 -0.22220993041992188 6 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 41.95555342248728 0.056367691549927025 1 {I|L}P{M(Oxidation (M))|F}P 4 5 58.928 0 0 5.9732 0 0 0 529.2623995416624 529.2623995416624 43.55501094587207 0 0 0 0 1 1.6989700043360187 0 0 + {I|L}P{M(Oxidation (M))|F}P 5.9732 + + 34 + NaN NaN 138209.1 NaN 9436 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12261 56.387 NaN 302110 35 0 17697 0.261 + 34372 YPEGFEIHSM 10 83 605.2649742128226 1208.5153954924451 2 605.2659301757812 MULTI HCD FTMS 0 0 0 12254 90841.0546875 0.556593201970632 4 -0.10464859008789062 7 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 88.95385435242217 0.0010827080174394257 1 PE[W{M(Oxidation (M))|F}]{I|L}H{[MS]|[{M(Oxidation (M))|F}A]} 8 3 47.828 0 0 3.9575 0 0 163.0616983186963 0 163.0616983186963 0 30.916375079047494 0 0 0 2.1549471895720984 0 1.7059771852360797 0 PE[W{M(Oxidation (M))|F}]{I|L}H{[MS]|[{M(Oxidation (M))|F}A]} 3.9575 - 650 + NaN NaN 129562.7 NaN 9437 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12262 56.391 NaN 496370 35 0 27361 0.261 + 4560 EYLKVDAQF 9 86 556.7866997522608 1111.5588465713215 2 556.787109375 MULTI HCD FTMS 0 0 0 12254 85615.2734375 0.4012596223542233 5 -0.13408660888671875 8 Unmodified _EYLKVDAQF_ ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant 26.268140514670165 0.13340543277302316 1 [YG]NT{I|L}[KA]AQ{M(Oxidation (M))|F} 10 5 + 61.365 0 0 5.5207 5.5207 85.21 0 0 0 25.259373593845908 16.53212513775344 16.53212513775344 6.5321251377534395 0 0.7887254899964358 0 0.6989700043360187 0.7614393726401688 [YG]NT{I|L}[KA]AQ{M(Oxidation (M))|F};[YG]NTRRAQ{M(Oxidation (M))|F};[YG]GGT{I|L}[KA]AQ{M(Oxidation (M))|F};[YG]NT{I|L}[KA]A[AG]{M(Oxidation (M))|F};[YG]GGTRRAQ{M(Oxidation (M))|F};[YG]NTRRA[AG]{M(Oxidation (M))|F};[YG][KG]KVDAQ{M(Oxidation (M))|F};[HT]N[R{I|L}]RN{[DS]|[MA]|[CV]|TT};{[DS]|[MA]|[CV]|TT}S{I|L}{I|L}VD[HV]Q;{[DS]|[MA]|[CV]|TT}S{I|L}{I|L}VDA[RH] 5.5207;4.933;4.6962;4.3537;4.1046;3.7621;2.8147;2.6222;2.5144;2.2436 -;-;-;-;-;-;-;-;-;- 450 + NaN NaN 157281.7 NaN 9438 2822 12254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12264 56.396 NaN 656710 35 0 97451 0.327 + 16723 LYANMFERL 9 80 586.7918830476151 1171.56921316203 2 586.7921142578125 MULTI HCD FTMS 0 0 0 12263 356053.5625 0.4999630964087672 12 -0.3211250305175781 1 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 96.93554129104106 0.004344229100022454 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 105.64 0 0 9.017 9.017 92.987 0 0 0 94.84305011473481 9.009461452434238 9.009461452434238 9.208187539523749 0 2.4049471895720984 2 0.8252574989159953 0.3494850021680094 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}Y{[YC]|[HE]}{[NV]|[RG]}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]A[TP][W{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9.017;8.231;7.2945;6.1574;5.6246;5.6005;4.8146;4.7889;4.7857;1.9565 +;-;-;-;-;-;-;-;-;- + 458 + NaN NaN 188234 NaN 9439 2823 12263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12265 56.4 NaN 355870 35 0 37579 0.261 + 29331 TYNYPVHYF 9 70 602.2770322673306 1202.539511601461 2 602.275146484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TYNYPVHYF_ ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A 21.74664581756881 0.17247014374749275 1 G{M(Oxidation (M))|F}SSY[C(Carbamidomethyl (C))Q]NK{I|L} 10 9 + 45.168 0 0 3.7561 3.7561 83.151 0 0 0 3.2225136234460905 1.4962945488243662 1.4962945488243662 7.984771632553304 0 1.5994850021680094 0 0 0 G{M(Oxidation (M))|F}SSY[C(Carbamidomethyl (C))Q]NK{I|L};G{[MS]|[{M(Oxidation (M))|F}A]}SW{I|L}[HV]S{[CP]|[EA]};G{M(Oxidation (M))|F}SSY[C(Carbamidomethyl (C))Q]GGK{I|L};G{M(Oxidation (M))|F}SS[C(Carbamidomethyl (C))Q]YNK{I|L};[YT]NY[C(Carbamidomethyl (C))Q]NK{I|L};G{M(Oxidation (M))|F}SS[C(Carbamidomethyl (C))Q]YGGK{I|L};[YT]NY[C(Carbamidomethyl (C))Q]GGK{I|L};[YT]GGY[C(Carbamidomethyl (C))Q]NK{I|L};[YT]NY{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}DM;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[VS]{I|L}[WH]{[CP]|[EA]} 3.7561;3.0921;2.994;2.6932;2.6507;1.9311;1.8849;1.8849;1.8546;1.737 -;-;-;-;-;-;-;-;-;- 415 + NaN NaN 160085.7 NaN 9440 2823 12263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12266 56.404 NaN 834540 35 0 108650 0.263 + 27035 SYLTSASSL 9 90 464.73473986209336 927.4549267909867 2 464.735107421875 MULTI HCD FTMS 0 0 0 12263 211333.9375 0.7790127470050447 -4 0.10335922241210938 3 Unmodified _SYLTSASSL_ ENSG00000104517|ENST00000520539|UBR5;nc|ENSG00000104517|O95071-2|UBR5 123.45060196383646 0.0010021686353097689 1 [Y{I|L}]S{[MG]|[TS]}ASS{I|L} 9 2 + 74.178 0 0 7.998 7.998 86.953 0 0 0 0.9625253114834464 0.9625253114834464 0.9625253114834464 0.9625253114834464 0 1.7302046884880937 2 1.055462187404089 0 [Y{I|L}]S{[MG]|[TS]}ASS{I|L};SY{I|L}{[MG]|[TS]}AS{I|L}S;[Y{I|L}]S{[MG]|[TS]}ATVS;[Y{I|L}]S{[MG]|[TS]}AS{I|L}S;[Y{I|L}]S{[MG]|[TS]}ATSV;[Y{I|L}]S{[MG]|[TS]}ASTV;[Y{I|L}]S{[MG]|[TS]}GTS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}ASS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}ATVS;[Y{I|L}]S{[MG]|[TS]}GT{I|L}S 7.998;7.8942;7.8861;7.811;7.1324;7.0574;6.0793;6.0664;5.9545;5.8924 -;-;-;-;-;-;-;+;-;- + 3253 NaN NaN 215028.2 NaN 9441 2823 12263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12267 56.407 NaN 636940 35 0 75483 0.261 + 16152 LPVALQTRL 9 71 505.821604895894 1009.628656858588 2 505.8214416503906 MULTI HCD FTMS 0 0 0 12263 205968.90625 0.5400240163434363 -3 0.08382415771484375 4 Unmodified _LPVALQTRL_ ENSG00000102103|ENST00000447146|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1 71.70789743142352 0.008535567138151097 1 {I|L}PVA{I|L}QTR{I|L} 9 0 + 98.272 0 0 9.7335 9.7335 93.596 0 0 0 77.98175615282175 6.41700253680132 6.41700253680132 9.208187539523749 0 2.4489700043360187 1.6989700043360187 0.7742275032520141 0.28872548999643577 + + {I|L}PVA{I|L}QTR{I|L};{I|L}PVA{I|L}[AG]TR{I|L};[{I|L}P]VA{I|L}QTR{I|L};[{I|L}P]G{I|L}{I|L}QTR{I|L};[VP]{I|L}A{I|L}QTR{I|L};[VP]A{I|L}{I|L}QTR{I|L} 9.7335;8.8215;6.8506;6.4791;5.5846;5.2131 +;-;+;-;-;- + 314 + NaN NaN 173598.9 NaN 9442 2823 12263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12268 56.41 NaN 156220 35 0 13392 0.261 + 35372 YYDDYRVQL 9 52 617.7906467920981 1233.566740650996 2 617.7904052734375 MULTI HCD FTMS 0 0 0 12263 46920.10546875 0.622672058523013 2 -0.052326202392578125 5 Unmodified _YYDDYRVQL_ ENSG00000258890|ENST00000556440|CEP95;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;ENST00000580285.1_1_17:62529306-62530930:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95 33.4449034751529 0.0954363425218424 1 YYDDYRVQ{I|L} 9 0 + 57.814 0 0 4.6867 4.6867 85.717 0 0 0 5.718217864706659 49.741691672186334 5.718217864706659 9.208187539523749 0 1.8182503180159344 2 0 0 + + YYDDYRVQ{I|L};YYDDYRV[AG]{I|L};YYDAA{I|L}[YR]{[CP]|[EA]};YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[YR]{[CP]|[EA]} 4.6867;3.9402;1.8546;0.98076 +;-;-;- + 52 NaN NaN 108394.8 NaN 9443 2823 12263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12270 56.415 NaN 1178900 35 0 99359 0.327 + 14146 LAELHLSQW 9 109 548.7931540571892 1095.5717551811783 2 548.7931518554688 MULTI HCD FTMS 0 0 0 12269 643310.1875 0.7377573800910585 2 -0.055599212646484375 1 Unmodified _LAELHLSQW_ ENST00000590152.1_1_19:9267483-9267588:+|nuORF 36.12702656103203 0.08312389501731911 1 {I|L}{I|L}TNW 5 6 63.32 0 0 5.7797 0 0 450.22371108222814 0 450.22371108222814 0 33.83900827207738 0 0 0 1.8494850021680094 0 0.8494850021680094 0.28872548999643577 {I|L}{I|L}TNW 5.7797 - 1512 NaN NaN 277321.2 NaN 9444 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12271 56.42 NaN 941130 35 0 70622 0.261 + 18147 MPDGQFKDISL 11 99 633.8069866554331 1265.599420377666 2 633.805419921875 MULTI HCD FTMS 0 0 0 12269 500033.1875 0.8341603310312384 -3 0.06854629516601562 2 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 97.28384467902475 0.01642477269867709 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 82.542 0 0 6.5219 6.5219 90.992 0 0 0 4.3572856956143795 41.90105620855804 4.3572856956143795 14.203555389302522 0 2.4361818737241734 0 2.221848749616356 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KDS{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV[{I|L}T]{M(Oxidation (M))|F}D{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KS{I|L}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KAED{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KSD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[KQ]{M(Oxidation (M))|F}D{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV[{I|L}T]{M(Oxidation (M))|F}DS{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KS{I|L}VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KAEVE 6.5219;5.3997;5.1407;4.8412;4.6131;4.436;4.2975;4.0184;3.9533;3.7252 +;-;-;-;-;-;-;-;-;- + 2575 NaN NaN 229080.6 NaN 9445 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12272 56.423 NaN 353350 35 0 26487 0.264 + 9881 IALSSRVGF 9 77 475.2789029586689 NaN 0 475.2710876464844 PEAK HCD FTMS 0 0 0 12269 8075.7880859375 0.3894050700218435 1 -0.032779693603515625 3 Unmodified _IALSSRVGF_ REV__ENSG00000197937|ENST00000334197|ZNF347;REV__nc|ENSG00000197937|Q96SE7-2|ZNF347 15.847184025352803 0.21527282152051216 1 VV 2 -1 9.464 0 0 0.99774 0 0 249.20153042730027 498.1829928033813 747.3845232306816 0 0 0 0 0 0 0 0 0 VV 0.99774 - 64 + NaN NaN 135805.1 NaN 9446 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12273 56.427 NaN 468470 35 0 28143 0.261 + 16835 LYEDIGKGAF 10 88 556.7866997522608 1111.5588465713215 2 556.7900390625 MULTI HCD FTMS 0 0 0 12269 77093.9375 0.3613220282433919 7 -0.20048141479492188 4 Unmodified _LYEDIGKGAF_ ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B 29.081581746732265 0.240155558137004 1 [YG]NTV[RK]{M(Oxidation (M))|F}Q 9 8 + 61.335 0 0 5.5179 5.5179 84.07 0 0 0 7.147642715192504 37.15350013324773 7.147642715192504 3.9087768732623474 0 1.8252574989159953 0 0.3807196863200844 0.6421590589602533 [YG]NTV[RK]{M(Oxidation (M))|F}Q;[YG]NTV[RK]Q{M(Oxidation (M))|F};[YG]NTV[RK][AG]{M(Oxidation (M))|F};[YG]GGTV[RK]{M(Oxidation (M))|F}Q;[YG]GGTV[RK]Q{M(Oxidation (M))|F};[YG]N[KG]V{[TV]|[{I|L}S]}{M(Oxidation (M))|F}Q;[YG]N[KG][W{I|L}]{M(Oxidation (M))|F}Q;{[QS]|[NT]}[YG]V[RK]{M(Oxidation (M))|F}Q;[YG]N[KG]V{[TV]|[{I|L}S]}Q{M(Oxidation (M))|F};{[QS]|[NT]}[YG]V[RK]Q{M(Oxidation (M))|F} 5.5179;5.1663;4.3378;4.1118;3.7601;2.2924;2.1747;2.0994;1.9407;1.7478 -;-;-;-;-;-;-;-;-;- 402 NaN NaN 149067 NaN 9447 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12274 56.43 NaN 214420 35 0 14550 0.261 + -1 IEACFFVSL 9 68 543.2699493351529 1084.5253457371057 2 544.277099609375 MULTI HCD FTMS 0 0 0 12269 35928.8359375 0.2125347254572262 11 -0.3015785217285156 5 Carbamidomethyl (C) _IEAC(Carbamidomethyl (C))FFVSL_ REV__ENSG00000137266|ENST00000406686|SLC22A23;REV__ENST00000482874.1_1_6:3277080-3284321:-|nuORF;REV__ENST00000497691.5_1_6:3273291-3410459:-|nuORF;REV__nc|ENSG00000137266|A1A5C7-2|SLC22A23;REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23 10.073929032068715 0.27331982688540024 1 SVS 3 -1 16.198 0 0 1.4935 0 0 130.07761957056158 678.2906588190061 808.3682783895676 0 0 0 0 0 0 0 0 0 SVS 1.4935 - 167 + NaN NaN 111615.5 NaN 9448 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12275 56.433 NaN 297670 35 0 18222 0.261 -1 QYMERLQLL 9 85 605.3181631147365 1208.621773296273 2 605.3187255859375 MULTI HCD FTMS 0 0 0 12269 81767.1640625 0.07040879142631076 -15 0.391815185546875 6 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 26.268140514670165 0.13340543277302316 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]PQ{I|L} 8 -1 32.768 0 0 2.7112 0 0 0 145.09445436112483 145.09445436112483 8.73963393407437 0 0 0 0 0 1.2218487496163564 0.5891368308784531 0.3054621874040891 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]PQ{I|L} 2.7112 - 443 NaN NaN 130075.1 NaN 9449 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12276 56.436 NaN 454200 35 0 37751 0.261 + 30399 VLNFGSCTUPP 11 78 593.2303001482842 1184.4460473633683 2 593.2308349609375 MULTI HCD FTMS 0 0 0 12269 35125.625 0.06663729302789492 9 -0.24607467651367188 7 Unmodified _VLNFGSCTUPP_ ENSG00000197406|ENST00000510508|DIO3 11.494710602746466 0.35692862141139436 1 [{I|L}V]{I|L} 3 9 23.557 0 0 1.9888 0 0 0 856.184730795262 856.184730795262 14.604093769761873 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}V]{I|L} 1.9888 - 42 NaN NaN 151808.8 NaN 9450 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12277 56.44 NaN 342280 35 0 25642 0.261 + 26001 SPDVNYEEL 9 81 533.2400536068817 1064.4655542805633 2 533.2409057617188 MULTI HCD FTMS 0 0 0 12269 50122.109375 0.4323180416264883 -6 0.16228485107421875 8 Unmodified _SPDVNYEEL_ ENSG00000165916|ENST00000298852|PSMC3 29.84058131909904 0.11198220037953927 1 Q{I|L}G{I|L}EE{I|L} 7 6 34.776 0 0 3.267 0 0 264.04653387808565 0 264.04653387808565 0 8.656724351228313 0 0 0 1.1549471895720984 0 0.930884548956689 0.3494850021680094 Q{I|L}G{I|L}EE{I|L} 3.267 - 562 + NaN NaN 136045.7 NaN 9451 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12278 56.443 NaN 89745 35 0 5771.2 0.261 -1 VYKAFVMETF 10 44 625.8098110191298 1249.6050691050596 2 626.3115844726562 MULTI HCD FTMS 0 0 0 12269 62780.06640625 0.45664747718538007 19 -0.5174598693847656 9 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 12.240655878213236 0.39661705172222156 1 MK[QP]{M(Oxidation (M))|F} 5 -1 12.24 0 0 0.97953 0 0 600.2540150373062 0 600.2540150373062 0 3.2609114364554337 0 0 0 0 0 0 0 MK[QP]{M(Oxidation (M))|F} 0.97953 - 15 NaN NaN 93563.7 NaN 9452 2824 12269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12280 56.448 NaN 2173400 35 0 318530 0.327 + 15447 LPDLEGRTHIF 11 92 433.234493428227 1296.681650884881 3 433.2345886230469 MULTI HCD FTMS 0 0 0 12279 721498.25 0.6435332334657716 4 -0.10771942138671875 1 Unmodified _LPDLEGRTHIF_ ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 32.518072372473235 0.18513602965484 1 {I|L}PY{[RE]|[WV]}A{M(Oxidation (M))|F}RV 9 7 66.238 0 0 5.1083 0 0 0 162.05608545474846 162.05608545474846 35.57660078222966 0 0 0 0 0.7742275032520141 1.5228787452803376 0.75 0.2614393726401688 {I|L}PY{[RE]|[WV]}A{M(Oxidation (M))|F}RV 5.1083 - 590 + NaN NaN 413228.6 NaN 9453 2825 12279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12281 56.452 NaN 586790 35 0 233320 0.261 + 16452 LSQYQAALV 9 54 496.77427958389256 991.5340062345851 2 496.77435302734375 MULTI HCD FTMS 0 0 0 12279 240863.234375 0.705534422662858 3 -0.07831954956054688 2 Unmodified _LSQYQAALV_ REV__ENSG00000087470|ENST00000549701|DNM1L;REV__ENST00000547548.1_1_12:32866256-32875568:+|nuORF;REV__nc|ENSG00000087470|O00429-2|DNM1L;REV__nc|ENSG00000087470|O00429-3|DNM1L;REV__nc|ENSG00000087470|O00429-4|DNM1L;REV__nc|ENSG00000087470|O00429-5|DNM1L;REV__nc|ENSG00000087470|O00429-6|DNM1L;REV__nc|ENSG00000087470|O00429-7|DNM1L;REV__nc|ENSG00000087470|O00429-8|DNM1L;REV__nc|ENSG00000087470|O00429-9|DNM1L 11.640296217721598 0.25978676193971967 1 V{I|L} 2 -1 23.711 0 0 2.3914 0 0 761.3708093571116 0 761.3708093571116 0 8.935078169319297 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.3914 - 69 NaN NaN 180600.1 NaN 9454 2825 12279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12282 56.456 NaN 636460 35 0 41638 0.261 + 17698 MASAELDYTI 10 107 557.2617578865431 NaN 0 557.2488403320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MASAELDYTI_ ENSG00000126106|ENST00000372237|TMEM53;ENST00000468117.1_1_1:45120771-45140129:-|nuORF;ENST00000476724.1_1_1:45120771-45140087:-|nuORF;ENST00000495630.1_1_1:45102061-45140129:-|nuORF 14.838274106304384 0.3224471714378502 1 AV[{M(Oxidation (M))|F}T][DG]TN 8 7 26.966 0 0 2.4239 0 0 87.0702631104078 217.06173120670158 304.1319943171094 0 0 0 0 0 0 0 0.566901560044258 0.5891368308784531 AV[{M(Oxidation (M))|F}T][DG]TN 2.4239 - 258 + NaN NaN 180270.1 NaN 9455 2825 12279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12283 56.459 NaN 185750 35 0 20608 0.261 + -1 LCCRFAAQVM 10 64 607.7775757874714 1213.5405986417427 2 608.27880859375 MULTI HCD FTMS 0 0 0 12279 29315.556640625 0.4180444522528709 9 -0.24272537231445312 4 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))CRFAAQVM(Oxidation (M))_ REV__ENSG00000172508|ENST00000687366|CARNS1;REV__nc|ENSG00000172508|A5YM72-2|CARNS1;REV__nc|ENSG00000172508|A5YM72-3|CARNS1;REV__nc|ENSG00000172508|A5YM72-4|CARNS1;REV__nc|ENSG00000172508|A5YM72|CARNS1 6.2057823575117 0.44245551207394906 1 WS[HM] 4 -1 24.693 0 0 2.0348 0 0 654.313768455275 0 654.313768455275 0 -4.235162698957282 -4.235162698957282 0 0 1 0 0 0 WS[HM] 2.0348 - 125 NaN NaN 107471.1 NaN 9456 2825 12279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12284 56.463 NaN 334040 35 0 18276 0.262 + 16696 LWYSLTPF 8 74 513.7681848800167 1025.5218168268334 2 514.2839965820312 MULTI HCD FTMS 0 0 0 12279 26280.146484375 0.581143594881679 -1 0.032779693603515625 5 Unmodified _LWYSLTPF_ REV__ENST00000519948.3_1_12:74932986-74933157:+|nuORF 13.50788311687929 0.4944073034352369 1 {I|L}[WY][TP]S{I|L}{M(Oxidation (M))|F} 8 -1 + 20.877 0 0 2.0358 2.0358 79.951 0 0 0 1.088037811863451 10.955612550363794 1.088037811863451 2.7950000835532016 0 0 0 0.3252574989159953 0 {I|L}[WY][TP]S{I|L}{M(Oxidation (M))|F};Y[KG]N[TP]S{I|L}{M(Oxidation (M))|F};Y[W{I|L}][TP]S{I|L}{M(Oxidation (M))|F};{I|L}[WY][TP]{M(Oxidation (M))|F}S{I|L};Y[KG]N[TP]{M(Oxidation (M))|F}S{I|L} 2.0358;1.7632;1.1315;0.60601;0.33347 -;-;-;-;- 142 + NaN NaN 132244.6 NaN 9457 2825 12279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12285 56.466 NaN 145940 35 0 15072 0.261 + 26579 SVSHPFSVN 9 59 487.2405973846136 972.4666418360272 2 487.2406005859375 MULTI HCD FTMS 0 0 0 12279 55737.37890625 0.1115420106735605 11 -0.2883033752441406 6 Unmodified _SVSHPFSVN_ REV__nc|ENSG00000100987|Q9NZR4-2|VSX1;REV__nc|ENSG00000100987|Q9NZR4-3|VSX1 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}SVN 4 -1 37.189 0 0 3.8242 0 0 507.2785816876969 0 507.2785816876969 0 21.70437245869298 0 0 0 0.5 0 0.9247425010840047 0 {M(Oxidation (M))|F}SVN 3.8242 + + 46 NaN NaN 102671.9 NaN 9458 2825 12279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12287 56.471 NaN 6478100 35 0 1060200 0.327 -1 DPRNATSVCI 10 124 566.7738872279571 1131.533221522714 2 566.7740478515625 MULTI HCD FTMS 0 0 0 12286 4010592 0.09349659111858476 12 -0.3242454528808594 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 1 P{M(Oxidation (M))|F}STSVSW 8 -1 89.475 0 0 7.9074 0 0 222.09734351268554 0 222.09734351268554 0 53.06810945375766 0 0 0 2.8494850021680094 0 1.860924374808178 0 P{M(Oxidation (M))|F}STSVSW 7.9074 - 13082 + NaN NaN 556511.1 NaN 9459 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12288 56.475 NaN 2119100 35 0 199510 0.261 + -1 GMSIGECPGIQ 11 127 582.7544334352332 NaN 0 582.7695922851562 PEAK HCD FTMS 0 0 0 12286 50097.44921875 0.8873479912987645 1 -0.029438018798828125 2 Carbamidomethyl (C),Oxidation (M) _GM(Oxidation (M))SIGEC(Carbamidomethyl (C))PGIQ_ REV__ENSG00000135821|ENST00000331872|GLUL 16.149105407346934 0.28641792874078525 1 VEMSTYVS 8 -1 49.247 0 0 4.2326 0 0 62.97546406353519 201.06710230045158 264.0425663639868 0 0 0 0 0 0 0 2.005276914845308 0 VEMSTYVS 4.2326 - 4351 + NaN NaN 413418 NaN 9460 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12289 56.479 NaN 1625300 35 0 153450 0.261 + 1862 CVSSFFAISW 10 109 573.7657539071055 1145.5169548810109 2 573.76416015625 MULTI HCD FTMS 0 0 0 12286 758368.3125 0.110558704510988 12 -0.3242454528808594 3 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 39.957323273324995 0.14577711486213385 1 HSVSTYVSW 9 7 85.548 0 0 7.468 0 0 81.03710695707817 0 81.03710695707817 0 50.09225224478768 0 0 0 2.836696871556164 0 1.8382716978510765 0 HSVSTYVSW 7.468 - 13372 + NaN NaN 341508.1 NaN 9461 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12290 56.482 NaN 1097500 35 0 146730 0.261 + 31351 VYAALQRQLL 10 92 587.8507921043418 1173.6870312754836 2 587.8507690429688 MULTI HCD FTMS 0 0 0 12286 474125.46875 0.9036597349227691 1 -0.029438018798828125 4 Unmodified _VYAALQRQLL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 180.00974506902125 4.3448472656311694E-16 1 [Y{I|L}]GA{I|L}QRQ{I|L}{I|L} 10 2 + 105.42 0 0 8.9823 8.9823 88.218 0 0 0 0.4524904595219681 12.084734525203743 0.4524904595219681 0.4524904595219681 0 2.5 2 0 0.7059771852360797 [Y{I|L}]GA{I|L}QRQ{I|L}{I|L};[YV]AA{I|L}QRQ{I|L}{I|L};[Y{I|L}]GA{I|L}QR[AG]{I|L}{I|L};[YV]AA{I|L}QR[AG]{I|L}{I|L};[Y{I|L}]GA{I|L}QR{I|L}GA{I|L};[Y{I|L}]Q{I|L}QRQ{I|L}{I|L};[YV]AA{I|L}QR{I|L}GA{I|L};[Y{I|L}]GA{I|L}QR{I|L}Q{I|L};[Y{I|L}]AG{I|L}QRQ{I|L}{I|L};[YV]AA{I|L}QR{I|L}Q{I|L} 8.9823;8.9438;8.2015;8.163;8.0895;8.0639;8.051;8.0422;8.0249;8.0037 -;+;-;-;-;-;-;-;-;- + 2973 NaN NaN 244783.3 NaN 9462 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12291 56.485 NaN 608430 35 0 145540 0.261 + 28999 TYDYNFHSF 9 87 597.2486620026949 1192.4827710721897 2 597.2482299804688 MULTI HCD FTMS 0 0 0 12286 386232.21875 0.2107236939422742 11 -0.2917671203613281 5 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 139.78183599554657 1.962818552322152E-05 1 TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 9 0 + 110.26 0 0 9.246 9.246 94.177 0 0 0 11.96751703594964 11.96751703594964 11.96751703594964 9.827796776480469 0 2.7346368802282015 2 1.4049471895720984 0.4247425010840047 + + TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDNY{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDGGY{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDNH[KP]S[EC];TYDYN{[WN]|[YH]}A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDNH[Y{M(Oxidation (M))|F}]S{M(Oxidation (M))|F} 9.246;8.4219;8.2425;8.1177;7.2935;6.9554;5.7189;5.7163;5.6411;5.4413 +;-;+;-;-;-;-;-;-;- + 1215 + NaN NaN 190095.3 NaN 9463 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12292 56.489 NaN 235820 35 0 30515 0.264 + 24183 RYFDVGLHNF 10 51 423.2119709819561 1266.6140835460683 3 423.2121276855469 MULTI HCD FTMS 0 0 0 12286 111186.9765625 0.42656900172732487 5 -0.1448822021484375 6 Unmodified _RYFDVGLHNF_ ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT 10.799506525563784 0.4100970765206026 1 GVW 3 9 19.693 0 0 1.5548 0 0 529.2654588124058 392.1678866022094 921.4333454146151 0 0 0 0 0 1 0 0 0 GVW 1.5548 - 25 + NaN NaN 131697.6 NaN 9464 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12293 56.492 NaN 359070 35 0 44188 0.261 + 25601 SFYTYMLR 8 78 540.7635382062565 1079.512523479313 2 541.7841186523438 MULTI HCD FTMS 0 0 0 12286 34124.58203125 0.629182438133417 -1 0.02281951904296875 7 Unmodified _SFYTYMLR_ ENSG00000183310|ENST00000328782|OR2T34 13.50788311687929 0.4944073034352369 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 5 27.447 0 0 2.5426 0 0 0 729.3051925069097 729.3051925069097 6.785437214322343 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.5426 - 201 NaN NaN 145516.2 NaN 9465 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12294 56.495 NaN 671690 35 0 63779 0.261 + 26002 SPDVNYEEL 9 96 533.2400536068817 1064.4655542805633 2 533.2390747070312 MULTI HCD FTMS 0 0 0 12286 96405.3984375 0.8315251208383788 -4 0.10464859008789062 8 Unmodified _SPDVNYEEL_ ENSG00000165916|ENST00000298852|PSMC3 40.23920728925047 0.06424668180817725 1 T{I|L}{[NV]|[RG]}C(Carbamidomethyl (C)){I|L}T{I|L} 8 6 35.921 0 0 3.3746 0 0 131.97312190668282 0 131.97312190668282 0 5.580619962282203 0 0 0 0.3494850021680094 0 1.0994850021680094 0.3807196863200844 T{I|L}{[NV]|[RG]}C(Carbamidomethyl (C)){I|L}T{I|L} 3.3746 - 1469 + NaN NaN 192415.2 NaN 9466 2826 12286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12296 56.5 NaN 26266000 35 0 3402000 0.327 + 19450 NPSVREFVL 9 123 530.7929472343349 1059.5713415354696 2 530.79345703125 MULTI HCD FTMS 0 0 0 12295 22190334 0.8480440973235764 -1 0.029438018798828125 1 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 151.47984550603806 7.261867933578587E-06 1 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 106.56 0 0 10.057 10.057 97.327 0 0 0 24.207414567553315 16.478174818886373 16.478174818886373 24.207414567553315 0 2.5189301784845295 1.2218487496163564 1.0669015600442577 2.471848749616356 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[PS]NVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};[DP][KG]RE{M(Oxidation (M))|F}V{I|L};[PS]GGVRE{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[PS]RE{M(Oxidation (M))|F}V{I|L};[PS][RV]NE{M(Oxidation (M))|F}V{I|L};[PS]NVRV[{M(Oxidation (M))|F}E]{I|L};{[NV]|[RG]}[SG][VP]E{M(Oxidation (M))|F}V{I|L} 10.057;7.7726;7.471;6.8835;6.209;6.0482;5.678;4.7946;4.2973;4.0634 +;+;-;-;-;-;-;-;-;- + 3182 NaN NaN 995406.2 NaN 9467 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12297 56.505 NaN 545360 35 0 78830 0.261 + 15655 LPEGIRPGTVL 11 83 576.3426159987267 1150.6706790642534 2 576.343017578125 MULTI HCD FTMS 0 0 0 12295 234507.15625 0.5086205295592094 5 -0.14151382446289062 2 Unmodified _LPEGIRPGTVL_ ENSG00000178934|ENST00000314980|LGALS7B;ENSG00000205076|ENST00000378626|LGALS7 68.75988807550267 0.01652727184171474 1 {I|L}PEG{I|L}R 6 5 73.977 0 0 6.429 0 0 0 482.2618807428344 482.2618807428344 50.11130752012136 0 0 0 0 1.7302046884880937 1.154901959985743 0.6989700043360187 0 + {I|L}PEG{I|L}R 6.429 + + 965 + NaN NaN 172942.2 NaN 9468 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12298 56.508 NaN 357170 35 0 31906 0.261 + 6963 FPVRDGVVL 9 76 501.2925655325258 1000.5705781318517 2 501.29248046875 MULTI HCD FTMS 0 0 0 12295 131369.890625 0.14288459390612254 15 -0.4028663635253906 3 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 29.84058131909904 0.11198220037953927 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L} 9 2 + 42.074 0 0 4.205 4.205 83.427 0 0 0 7.442642798745709 15.598623115335073 7.442642798745709 7.442642798745709 0 1.274227503252014 1.3979400086720375 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L};{[TV]|[{I|L}S]}V[WE]RV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD][VG]V{I|L};[{M(Oxidation (M))|F}V]P[RV][DG]V{I|L};{[TV]|[{I|L}S]}[YG]{[HG]|PP}RV{I|L};{[TV]|[{I|L}S]}V[W{I|L}][RD]{I|L};[Q{I|L}]E[RP]{M(Oxidation (M))|F}V{I|L};{[TV]|[{I|L}S]}V[HT][KG]{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]P[RD][VG]V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS]{[HG]|PP}RV{I|L} 4.205;3.4611;3.3604;2.3916;2.3137;2.2329;1.7386;1.6258;1.547;1.2686 -;-;+;-;-;-;-;-;-;- + 302 NaN NaN 137260.5 NaN 9469 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12299 56.511 NaN 299030 35 0 66106 0.261 + 31522 VYGFVREAL 9 61 527.2905527680153 1052.5665526028306 2 527.290771484375 MULTI HCD FTMS 0 0 0 12295 118248.5625 0.18917435588448386 8 -0.21654129028320312 4 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 45.739877483867886 0.03899552410870734 1 [YV]G{M(Oxidation (M))|F}VREA{I|L} 9 0 + 70.301 0 0 6.679 6.679 84.31 0 0 0 0.10090614668492037 0.10090614668492037 0.10090614668492037 0.10090614668492037 0 2 2 0 0 + + [YV]G{M(Oxidation (M))|F}VREA{I|L};VYG{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};VY[R{M(Oxidation (M))|F}]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};[YV][KP][RD]Y{I|L};[YV][R{M(Oxidation (M))|F}][VG]EA{I|L};[YV][PS]{[NV]|[RG]}VY{I|L} 6.679;6.6694;3.7933;3.7472;3.4774;2.6897 +;-;-;-;-;- + 270 NaN NaN 129702.1 NaN 9470 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12300 56.515 NaN 373360 35 0 15494 0.261 -1 FPDRIMNTF 9 76 578.7764311978499 1155.5383094624997 2 578.7765502929688 MULTI HCD FTMS 0 0 0 12295 115306.5625 0.043214359130612556 40 -1.0837364196777344 5 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 42.312485326615175 0.05472917415473307 1 MNT{M(Oxidation (M))|F} 4 -1 39.412 0 0 3.4107 0 0 644.3288441388687 0 644.3288441388687 0 15.767287836710722 0 0 0 0.6237125054200234 0 0 0.4247425010840047 MNT{M(Oxidation (M))|F} 3.4107 + + 181 NaN NaN 141580.9 NaN 9471 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12301 56.518 NaN 104220 35 0 13099 0.262 + 26396 SSTESRDAN 9 46 483.7081286642286 NaN 0 483.2329406738281 PEAK HCD FTMS 0 0 0 12295 15169.56640625 0.5531256640939466 1 -0.02606201171875 6 Unmodified _SSTESRDAN_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4 2.9952420565917617 0.2807323172627736 1 AD 2 -1 9.464 0 0 0.98031 0 0 132.04779247216726 644.2696627252561 776.3174551974234 0 0 0 0 0 0 0 0 0 AD 0.98031 - 8 + NaN NaN 95054.4 NaN 9472 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12302 56.521 NaN 136720 35 0 34596 0.261 + 20888 PIVRCPVP 8 48 440.7570786748241 NaN 0 440.7569580078125 PEAK HCD FTMS 0 0 0 12295 13400.03125 0.2212984701320982 1 -0.02606201171875 7 Unmodified _PIVRCPVP_ REV__ENSG00000121210|ENST00000409959|TMEM131L;REV__ENST00000462540.1_1_4:154475378-154479541:+|nuORF;REV__nc|ENSG00000121210|A2VDJ0-3|TMEM131L;REV__nc|ENSG00000121210|A2VDJ0|TMEM131L 2.8892196856762586 0.38822285293237185 1 M 1 -1 4.6041 0 0 0.52349 0 0 351.22550881273565 394.20957361392817 745.4350824266638 0 0 0 0 0 0 0 0 0 M 0.52349 - 5 + NaN NaN 109241.5 NaN 9473 2827 12295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12304 56.526 NaN 1041300 35 0 93700 0.327 + 18251 MPDVDLHL 8 90 478.2313836346678 954.4482143361356 2 478.2313537597656 MULTI HCD FTMS 0 0 0 12303 558814.8125 0.4770659280934804 16 -0.43924713134765625 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 114.94377779790601 0.029101733901958818 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 69.607 0 0 7.2929 7.2929 93.581 0 0 0 6.7216751192405155 47.55571607740464 6.7216751192405155 21.721675119240516 0 1.774227503252014 0 1.9291746928241125 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[CA]|SS}[YK]N{I|L};{[ES]|[DT]|[{I|L}C]}SD[YK]N{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[KG]E 7.2929;5.0171;1.4536;0.98732;0.86241;0.1094;0.042417 +;+;-;-;-;-;- + 647 NaN NaN 243818.6 NaN 9474 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12305 56.531 NaN 764330 35 0 96041 0.261 + 22265 QPDNIKALF 9 86 523.2877006753984 1044.5608484175966 2 523.2880859375 MULTI HCD FTMS 0 0 0 12303 431395.25 0.7427326824809722 3 -0.08938217163085938 2 Unmodified _QPDNIKALF_ ENSG00000105701|ENST00000608443|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318-3|FKBP8;nc|ENSG00000105701|Q14318|FKBP8 37.97399986684836 0.07464525285885698 1 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F} 9 2 + 41.067 0 0 3.9315 3.9315 82.434 0 0 0 10.889399919613965 16.478174818886373 10.889399919613965 5.752574989159946 0 0.3252574989159953 0 0 0.2742275032520141 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DN{I|L}KA{I|L}{M(Oxidation (M))|F};[NP]EGG{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DGG{I|L}KA{I|L}{M(Oxidation (M))|F};[KA]PA[VG][DG]A{I|L}{M(Oxidation (M))|F};[KA]PA[VG]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F};[KA]P[NP]{[MG]|[TS]}A{I|L}{M(Oxidation (M))|F};[NP]EN{I|L}K{M(Oxidation (M))|F}[{I|L}A];[QP]DN{I|L}K{M(Oxidation (M))|F}[{I|L}A];[NP]EGG{I|L}K{M(Oxidation (M))|F}[{I|L}A] 3.9315;3.3808;3.0499;2.4992;2.084;1.9113;1.35;1.3042;0.75345;0.42263 -;+;-;-;-;-;-;-;-;- + 1000 + NaN NaN 195864.5 NaN 9475 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12306 56.534 NaN 1058700 35 0 154910 0.261 + 29332 TYNYPVHYF 9 102 602.2770322673306 1202.539511601461 2 602.2767944335938 MULTI HCD FTMS 0 0 0 12303 666294.625 0.8286547659809477 -3 0.07831954956054688 3 Unmodified _TYNYPVHYF_ ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A 111.28704002717404 0.0027322905094575235 1 [YT]NYPVHY{M(Oxidation (M))|F} 9 0 + 97.316 0 0 8.0925 8.0925 89.891 0 0 0 7.155593552960937 7.155593552960937 7.155593552960937 7.155593552960937 0 2.6237125054200234 2 0.6861818737241735 1.0114393726401687 + + [YT]NYPVHY{M(Oxidation (M))|F};YTNYPVHY{M(Oxidation (M))|F};[YT]NYPVH{M(Oxidation (M))|F}Y;YTNSVPYT{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]TYPVHY{M(Oxidation (M))|F};[YT]GGYPVHY{M(Oxidation (M))|F};YTGGSVPYT{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YTGGYPVHY{M(Oxidation (M))|F};[YT]NYPV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}W;[YQ]SYPVHY{M(Oxidation (M))|F} 8.0925;7.4975;7.3416;7.2229;6.8452;6.4857;6.4608;6.4152;6.2603;6.1377 +;-;-;-;-;-;-;-;-;- + 4865 NaN NaN 259206.7 NaN 9476 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12307 56.537 NaN 738140 35 0 51006 0.261 + 17837 MHSSIEAVSSM 11 102 589.7601057528578 1177.5056585725156 2 589.7594604492188 MULTI HCD FTMS 0 0 0 12303 479265.84375 0.19333146244012545 14 -0.3768043518066406 4 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 39.94969957227396 0.1372740116928318 1 {[MS]|[{M(Oxidation (M))|F}A]}S{[QN]|[E{I|L}]|[KN]}[HA]VS{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 + 56.193 0 0 4.7722 4.7722 88.054 0 0 0 3.5309630939518257 37.37021956267098 3.5309630939518257 14.630395065818838 0 1.9291746928241125 1.3979400086720375 1.372363747448347 0 {[MS]|[{M(Oxidation (M))|F}A]}S{[QN]|[E{I|L}]|[KN]}[HA]VS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}S{[QN]|[E{I|L}]|[KN]}[HA]W{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]DSVS{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[YV]DSVS{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}V]{[MG]|[TS]}SVS{[MS]|[{M(Oxidation (M))|F}A]};{[{M(Oxidation (M))|F}C]|[YS]}W[YR]VS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}S[VS]H{I|L}VS[EC];{[MS]|[{M(Oxidation (M))|F}A]}SM{I|L}H{[ET]|[MV]}GW;[YQ][YV]DSW{[MS]|[{M(Oxidation (M))|F}A]};[YQ][YV]DWS{[MS]|[{M(Oxidation (M))|F}A]} 4.7722;3.5297;3.3264;3.224;2.9921;2.9639;2.6394;2.3285;2.3112;2.3112 -;-;-;-;-;-;-;-;-;- 2221 NaN NaN 196149.2 NaN 9477 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12308 56.541 NaN 273780 35 0 26525 0.261 + 32077 VYQPGSVLDFP 11 66 611.311258355555 1220.6079637779098 2 611.3101806640625 MULTI HCD FTMS 0 0 0 12303 202529.703125 0.741008810994775 12 -0.32110595703125 5 Unmodified _VYQPGSVLDFP_ ENSG00000204590|ENST00000376621|GNL1 8.745405648335112 0.3805662881914433 1 {I|L}P 2 9 25.969 0 0 2.1276 0 0 992.4580327215294 0 992.4580327215294 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L}P 2.1276 - 20 NaN NaN 131774.8 NaN 9478 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12309 56.544 NaN 515290 35 0 51076 0.263 + 20970 PLHGLLFF 8 79 472.27518765536774 NaN 0 472.2749938964844 PEAK HCD FTMS 0 0 0 12303 22156.537109375 0.12367613521097671 13 -0.3439788818359375 6 Unmodified _PLHGLLFF_ ENST00000332995.11_1_6:13288134-13288596:+|nuORF 11.114462752807354 0.38822285293237185 1 PEM{M(Oxidation (M))|F} 4 6 15.266 0 0 1.6197 0 0 131.15102574373788 304.14081751041255 435.2918432541504 0 0 0 0 0 0 0 0.3494850021680094 0 PEM{M(Oxidation (M))|F} 1.6197 - 70 + NaN NaN 163799.7 NaN 9479 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12310 56.547 NaN 452360 35 0 40135 0.261 + 34373 YPEGFEIHSM 10 95 605.2649742128226 1208.5153954924451 2 605.2655029296875 MULTI HCD FTMS 0 0 0 12303 18346.3515625 0.11241012773111174 10 -0.26874542236328125 7 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 19.256988751693697 0.33098864134661865 1 [YV][HS][W{M(Oxidation (M))|F}]Q{I|L} 8 8 20.289 0 0 1.6788 0 0 0 144.98957331071816 144.98957331071816 7.726211886592729 0 0 0 0 0 1.6989700043360187 0.6643943297944485 0 [YV][HS][W{M(Oxidation (M))|F}]Q{I|L} 1.6788 - 159 NaN NaN 156433.2 NaN 9480 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12311 56.551 NaN 148230 35 0 31406 0.264 + -1 EMDCELSGNF 10 56 406.48651123046875 NaN 0 406.48651123046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _EM(Oxidation (M))DC(Carbamidomethyl (C))ELSGNF_ REV__ENSG00000118689|ENST00000406360|FOXO3;REV__nc|ENSG00000118689|O43524-2|FOXO3 1.7422754331352037 0.33869314273211465 1 D 1 -1 6.9897 0 0 0.86191 0 0 95.62758876777498 597.2781466119749 692.9057353797499 0 0 0 0 0 0 0 0 0 D 0.86191 + + 5 + NaN NaN 108593.2 NaN 9481 2828 12303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12313 56.556 NaN 3865400 35 0 645640 0.327 + 17492 LYTEKFEEF 9 128 603.2887981157722 1204.5630432983444 2 603.301513671875 MULTI HCD FTMS 0 0 0 12312 642963.625 0.9398417033584706 -1 0.029399871826171875 1 Unmodified _LYTEKFEEF_ ENSG00000084652|ENST00000373610|TXLNA 128.93241758739586 0.0006697181619526092 1 VYP{M(Oxidation (M))|F}[PS]WY{M(Oxidation (M))|F} 9 7 + 60.799 0 0 5.0474 5.0474 83.264 0 0 0 12.773109370204452 5.012262311882765 5.012262311882765 3.7371250542002343 0 0.9247425010840047 2 0.9489700043360187 0 VYP{M(Oxidation (M))|F}[PS]WY{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}AWY{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KG{[QG]|[NA]}Y{M(Oxidation (M))|F};{I|L}YTEM[HA]PP{M(Oxidation (M))|F};{I|L}YCYRE{I|L}V{M(Oxidation (M))|F};{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}KKSSW;[YV]PE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PP{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KGYNA{M(Oxidation (M))|F};{I|L}YCYVV{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F};VYP{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EPP{M(Oxidation (M))|F} 5.0474;4.7371;4.716;4.1595;4.1217;4.0941;4.0802;4.0346;4.0292;4.0177 -;-;-;-;-;-;-;-;-;- 14575 + NaN NaN 671867.7 NaN 9482 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12314 56.56 NaN 532020 35 0 116950 0.261 + 1035 AYGHFSYEF 9 80 560.7409098772953 1119.4672668213905 2 560.7404174804688 MULTI HCD FTMS 0 0 0 12312 342575.3125 0.17344270352159374 9 -0.23934555053710938 2 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 85.35673624503755 0.00464763827098139 1 {M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 5 4 57.735 0 0 5.1574 0 0 428.18089492011876 0 428.18089492011876 0 37.78659694992122 0 0 0 1.774227503252014 0 0.805462187404089 0 + {M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 5.1574 + + 375 NaN NaN 166930.9 NaN 9483 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12315 56.564 NaN 454760 35 0 29876 0.261 + 14147 LAELHLSQW 9 84 548.7931540571892 1095.5717551811783 2 548.792724609375 MULTI HCD FTMS 0 0 0 12312 182667.828125 0.20948609383622388 7 -0.18058395385742188 3 Unmodified _LAELHLSQW_ ENST00000590152.1_1_19:9267483-9267588:+|nuORF 32.78568957990786 0.09846250359632436 1 {I|L}TNW 4 7 59.597 0 0 5.4398 0 0 563.3061526320326 0 563.3061526320326 0 28.873409493950675 0 0 0 1.7302046884880937 0 0.7742275032520141 0.2614393726401688 {I|L}TNW 5.4398 - 962 NaN NaN 158950.9 NaN 9484 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12316 56.567 NaN 366930 35 0 35285 0.261 + 16153 LPVALQTRL 9 66 505.821604895894 1009.628656858588 2 505.82135009765625 MULTI HCD FTMS 0 0 0 12312 244369.5625 0.640705604627341 3 -0.08605194091796875 4 Unmodified _LPVALQTRL_ ENSG00000102103|ENST00000447146|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1 43.981846655682396 0.04706587046877104 1 {I|L}PVA{I|L}QTR{I|L} 9 0 + 87.617 0 0 8.6782 8.6782 92.512 0 0 0 71.44647232932286 6.127042801912879 6.127042801912879 9.208187539523749 0 2.079689690656103 1.6989700043360187 0.4247425010840047 0 + + {I|L}PVA{I|L}QTR{I|L};{I|L}PVA{I|L}[AG]TR{I|L} 8.6782;7.7661 +;- + 108 + NaN NaN 136578.8 NaN 9485 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12317 56.57 NaN 778050 35 0 51814 0.261 + 27036 SYLTSASSL 9 92 464.73473986209336 927.4549267909867 2 464.7346496582031 MULTI HCD FTMS 0 0 0 12312 116920.1484375 0.4309875029633348 2 -0.0599822998046875 5 Unmodified _SYLTSASSL_ ENSG00000104517|ENST00000520539|UBR5;nc|ENSG00000104517|O95071-2|UBR5 85.27202061508552 0.004649858145912257 1 [VS]T[YT]ASS{I|L} 9 3 + 35.344 0 0 3.8109 3.8109 80.025 0 0 0 0.7918124604762511 1.803556944260336 0.7918124604762511 0.7918124604762511 0 1.305462187404089 0 0.7887254899964358 0 [VS]T[YT]ASS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}ASS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SS{I|L};[VS]T[YT]AS{I|L}S;NYPN[RP]AP;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}AS{I|L}S;[VS]T[YT]ATVS;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}ATVS;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{I|L}S;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}TVS 3.8109;3.7255;3.3649;2.7023;2.6758;2.6169;2.364;2.2786;2.2563;1.918 -;+;-;-;-;-;-;-;-;- + 1401 NaN NaN 209558.1 NaN 9486 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12318 56.574 NaN 221910 35 0 14178 0.261 -1 VMAPRTLLL 9 67 515.3098793642871 1028.605205795374 2 515.3106079101562 MULTI HCD FTMS 0 0 0 12312 76514.7734375 0.16975890500578372 26 -0.697998046875 6 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 1 AD{I|L} 3 -1 35.445 0 0 3.446 0 0 711.4643726971024 0 711.4643726971024 0 17.971062485323515 0 0 0 0.9247425010840047 0 0 0 AD{I|L} 3.446 - 412 NaN NaN 114518.8 NaN 9487 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12319 56.577 NaN 83532 35 0 7493.8 0.261 + 4737 EYSKYLQQAF 10 43 638.8141371141248 1275.6137212950496 2 638.8140869140625 MULTI HCD FTMS 0 0 0 12312 17148.53515625 0.01879543202531572 17 -0.46218109130859375 7 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 18.721224879955976 0.3359999958351898 1 QS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4 8 23.188 0 0 1.8178 0 0 783.3768001450405 0 783.3768001450405 0 6.989700043360184 0 0 0 1 0 0 0 QS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.8178 - 37 NaN NaN 99849.7 NaN 9488 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12320 56.58 NaN 128940 35 0 7008.5 0.261 -1 MLLEHSFTL 9 54 553.7827758789062 NaN 0 553.7827758789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _M(Oxidation (M))LLEHSFTL_ ENSG00000059691|ENST00000263985|GATB;GATB|p.A511Gfs*19|1|0.37|ENSG00000059691|chr4:151672777-151672778|-/T|frameshift_variant 4.3292370932331545 0.2742679634796037 1 TG{M(Oxidation (M))|F}V 4 -1 12.027 0 0 1.0879 0 0 166.0829817365248 532.2325533502561 698.315535086781 0 0 0 0 0 0 0 0 0 TG{M(Oxidation (M))|F}V 1.0879 - 15 + NaN NaN 103340.3 NaN 9489 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12321 56.583 NaN 116010 35 0 13014 0.261 + 15758 LPFPKDASL 9 56 494.2791154303076 986.5436779274153 2 494.2796630859375 MULTI HCD FTMS 0 0 0 12312 56692.1328125 0.032220496535887 15 -0.4098472595214844 9 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 27.628801355627647 0.12213550946336599 1 {I|L}P{M(Oxidation (M))|F} 3 6 50.674 0 0 5.1365 0 0 0 626.3155277399554 626.3155277399554 24.731975075880328 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 + {I|L}P{M(Oxidation (M))|F} 5.1365 + + 23 + NaN NaN 105887.3 NaN 9490 2829 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12323 56.588 NaN 5508900 35 0 957870 0.326 + 17493 LYTEKFEEF 9 119 603.2887981157722 1204.5630432983444 2 603.2993774414062 MULTI HCD FTMS 0 0 0 12322 684119.0625 1 0 0 1 Unmodified _LYTEKFEEF_ ENSG00000084652|ENST00000373610|TXLNA 136.39213081522345 0.00021731600835925866 1 {I|L}YTEK{M(Oxidation (M))|F}EE{M(Oxidation (M))|F} 9 0 + 73.21 0 0 6.0777 6.0777 84.902 0 0 0 13.807036861399098 16.627013864581386 13.807036861399098 3.6178950783555592 0 2.1989700043360187 1.5228787452803376 1.8670664226808622 0.3252574989159953 + + {I|L}YTEK{M(Oxidation (M))|F}EE{M(Oxidation (M))|F};{I|L}YTE{M(Oxidation (M))|F}KEE{M(Oxidation (M))|F};[YV][RD]{M(Oxidation (M))|F}PVY{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KG{[QG]|[NA]}Y{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[CA]|SS}{I|L}V{M(Oxidation (M))|F};[Y{I|L}]T{[CA]|SS}{M(Oxidation (M))|F}{M(Oxidation (M))|F}PP{M(Oxidation (M))|F};{I|L}YT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[RD]P{M(Oxidation (M))|F};{I|L}YCYRE{I|L}V{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KGYNA{M(Oxidation (M))|F};{I|L}YTE{M(Oxidation (M))|F}{[WT]|[RM]}V{M(Oxidation (M))|F} 6.0777;5.7774;4.6534;4.5508;4.5086;4.4938;4.4308;4.4303;4.3993;4.3495 +;-;-;-;-;-;-;-;-;- + 16880 + NaN NaN 859596 NaN 9491 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12324 56.593 NaN 543570 35 0 52287 0.261 + 18148 MPDGQFKDISL 11 76 633.8069866554331 1265.599420377666 2 633.8055419921875 MULTI HCD FTMS 0 0 0 12322 333226.53125 0.5558918099128997 3 -0.07291412353515625 2 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 87.12335221954112 0.005855231244176575 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 86.987 0 0 6.8732 6.8732 92.155 0 0 0 4.981979378655879 77.60145755114235 4.981979378655879 16.703555389302522 0 2.1237125054200234 0 1.9049471895720984 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KDS{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))C]KD{I|L}S{I|L};{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))C]KDS{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}DQ{M(Oxidation (M))|F}YYS{I|L};{[TV]|[{I|L}S]}[VG]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}DRS[W{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8732;5.5534;4.2221;4.0129;2.6931;2.3888;2.0964;1.9624 +;-;-;-;-;-;-;- + 329 NaN NaN 167368.5 NaN 9492 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12325 56.596 NaN 871800 35 0 123270 0.261 + 33347 YGEYRMETF 9 102 598.2564573460114 NaN 0 598.2431640625 PEAK HCD FTMS 0 0 0 12322 22392.5625 1 0 0 3 Unmodified _YGEYRMETF_ REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 25.399314129420986 0.1511568710901456 1 TSPY{M(Oxidation (M))|F}RD 7 -1 36.023 0 0 3.0158 0 0 64.02669487173087 261.08791843160105 325.1146133033319 0 0 0 0 0 0 0 1.110924374808178 0 TSPY{M(Oxidation (M))|F}RD 3.0158 - 2251 + NaN NaN 208469.5 NaN 9493 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12326 56.6 NaN 725140 35 0 57958 0.262 + 8541 HALSLKIVL 9 83 497.32649470797935 992.6384364827587 2 497.3268127441406 MULTI HCD FTMS 0 0 0 12322 214730.21875 0.7925688898895595 -3 0.08812332153320312 4 Unmodified _HALSLKIVL_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 106.94017166704063 0.003441928997083001 1 [HA]{I|L}S{I|L}K{I|L}V{I|L} 9 0 + 77.803 0 0 7.838 7.838 89.523 0 0 0 16.611592866953167 54.31589979341102 16.611592866953167 7.2184874961635614 0 1.7728787452803374 1.0969100130080565 1.73239816956497 0 + + [HA]{I|L}S{I|L}K{I|L}V{I|L};[HA]{I|L}S{I|L}KV{I|L}{I|L};{[TV]|[{I|L}S]}[HA]{I|L}K{I|L}V{I|L};HA{I|L}S{I|L}K{I|L}V{I|L};{[TV]|[{I|L}S]}[HA]{I|L}KV{I|L}{I|L};[{I|L}V]KT[HA]{I|L}V{I|L};{[HG]|PP}[{I|L}T]{I|L}K{I|L}V{I|L};HA{I|L}S{I|L}[{I|L}V]K{I|L};[{I|L}V]KT[HA]V{I|L}{I|L};[{I|L}V]KT{I|L}[HA]V{I|L} 7.838;7.1108;5.4158;4.71;4.6886;4.2177;4.0619;3.6267;3.4905;3.4861 +;-;-;+;-;-;-;-;-;- + 734 NaN NaN 204501.1 NaN 9494 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12327 56.603 NaN 537410 35 0 82248 0.261 + 24879 RYQGVNLYI 9 70 563.3067615927447 1124.5989702522893 2 563.3067016601562 MULTI HCD FTMS 0 0 0 12322 179471.6875 0.8261162383916961 1 -0.02732086181640625 5 Unmodified _RYQGVNLYI_ ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4 46.020951573049366 0.037705236580089195 1 [Y{I|L}]NGRN{I|L}Y{I|L} 9 3 + 72.986 0 0 6.49 6.49 88.826 0 0 0 18.212112250009653 65.51206571517739 18.212112250009653 9.208187539523749 0 1.2302046884880937 1.3979400086720375 0 0.6861818737241735 [Y{I|L}]NGRN{I|L}Y{I|L};[Y{I|L}]GGGRN{I|L}Y{I|L};[Y{I|L}]NGRGG{I|L}Y{I|L};[Y{I|L}]GGGRGG{I|L}Y{I|L};[YR]AG[VG]N{I|L}Y{I|L};[YR]Q[VG]N{I|L}Y{I|L};[YR]AG[VG]GG{I|L}Y{I|L};[YR]Q[VG]GG{I|L}Y{I|L} 6.49;5.6712;5.6712;4.8563;4.4281;3.8473;3.6132;3.0285 -;-;-;-;-;+;-;- + 326 NaN NaN 175439 NaN 9495 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12328 56.607 NaN 396250 35 0 28275 0.261 + 13872 KYQAIGAYYI 10 79 595.315224177062 1188.6158954209238 2 595.3150024414062 MULTI HCD FTMS 0 0 0 12322 193804.046875 1 0 0 6 Unmodified _KYQAIGAYYI_ ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1;PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant 41.8396318013385 0.12944265636084 1 [YQ]KA{I|L}QYY{I|L} 9 4 + 57.373 0 0 4.8269 4.8269 82.817 0 0 0 3.679767852945943 16.478174818886373 3.679767852945943 3.679767852945943 0 1.774227503252014 0 0 0 [YQ]KA{I|L}QYY{I|L};[YK]QA{I|L}QYY{I|L};YYQVNVKY{I|L};[YQ]KAQ{I|L}YY{I|L};[YQ]KA{I|L}[AG]YY{I|L};[YK]QAQ{I|L}YY{I|L};[YK][AG]A{I|L}QYY{I|L};[YK]QA{I|L}[AG]YY{I|L};YYQ{I|L}[QA]KY{I|L};YY[AG]VNVKY{I|L} 4.8269;4.5173;4.1075;4.0671;4.0522;3.7575;3.7426;3.7426;3.6912;3.3328 -;-;-;-;-;-;-;+;-;- + 1581 NaN NaN 145452.4 NaN 9496 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12329 56.611 NaN 1411200 35 0 122850 0.263 + 15802 LPHTDFTL 8 107 472.24781114897854 942.4810693647571 2 472.24774169921875 MULTI HCD FTMS 0 0 0 12322 364884.90625 0.13009697554804817 -6 0.17316055297851562 7 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 93.88341677533236 0.03025875853923581 1 [{I|L}P]HES{M(Oxidation (M))|F}T{I|L} 8 2 + 59.414 0 0 6.304 6.304 91.428 0 0 0 20.606023255826074 16.40978057358332 16.40978057358332 19.47057732028121 0 0.9143943297944485 2 0.6861818737241735 0 [{I|L}P]HES{M(Oxidation (M))|F}T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};[{I|L}T]{M(Oxidation (M))|F}[HS]EP{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VNPEP{I|L};[{I|L}T]{M(Oxidation (M))|F}DTHP{I|L};[{I|L}P]{M(Oxidation (M))|F}QEV[NP];[{M(Oxidation (M))|F}T]{I|L}[HS]EP{I|L};{I|L}TNE[{I|L}P]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{I|L}T][RD]YY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}T{I|L} 6.304;4.2381;4.1177;3.6536;3.6218;2.7325;2.556;2.3678;2.171;2.1696 -;-;-;-;-;-;-;-;-;- 1863 NaN NaN 302488 NaN 9497 2830 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12331 56.616 NaN 3941800 35 0 644060 0.327 -1 DPRNATSVCI 10 127 566.7738872279571 1131.533221522714 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12330 2079204.25 0.0484712754661341 17 -0.4378395080566406 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 1 AP{M(Oxidation (M))|F}STSVSW 9 -1 93.736 0 0 8.284 0 0 151.07174279832867 0 151.07174279832867 0 56.03535685825041 0 0 0 2.8494850021680094 0 2.115356566548286 0 AP{M(Oxidation (M))|F}STSVSW 8.284 - 17514 + NaN NaN 648698.2 NaN 9498 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12332 56.62 NaN 1585300 35 0 131100 0.261 -1 0 111 582.7692560816736 1163.523959230147 2 582.769775390625 MULTI HCD FTMS 0 0 0 12330 803311.5625 0.08546074973946177 17 -0.4378395080566406 2 NaN NaN 1 SVSTYVSW 8 -1 77.046 0 0 6.6218 0 0 236.0787746368199 0 236.0787746368199 0 57.9571874316362 0 0 0 2.5506484875809043 0 1.3684151806525389 0 SVSTYVSW 6.6218 - 9349 + NaN NaN 330968.2 NaN 9499 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12333 56.624 NaN 1096700 35 0 102010 0.261 -1 IETHGMAVSW 10 95 573.7657539071055 1145.5169548810109 2 573.764404296875 MULTI HCD FTMS 0 0 0 12330 492497.1875 0.0717986895388712 17 -0.4378395080566406 3 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 37.97399986684836 0.1629881689457739 1 SSVSTYVSW 9 -1 83.714 0 0 7.308 0 0 131.02203535602195 0 131.02203535602195 0 50.68893535299728 0 0 0 2.25 0 1.7416440611282626 0 SSVSTYVSW 7.308 - 8908 + NaN NaN 252930.5 NaN 9500 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12334 56.627 NaN 557750 35 0 48867 0.261 + 25526 SFLADPDCVF 10 94 557.2488518485341 1112.483150763868 2 557.248779296875 MULTI HCD FTMS 0 0 0 12330 199012.640625 0.5573270949568865 3 -0.07502365112304688 4 Unmodified _SFLADPDCVF_ REV__ENSG00000244405|ENST00000306376|ETV5;REV__nc|ENSG00000244405|P41161-2|ETV5 19.256988751693697 0.33098864134661865 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VYG[C(Carbamidomethyl (C))Q]A 9 -1 47.787 0 0 4.2955 0 0 0 84.0222810920283 84.0222810920283 30.440520441700997 0 0 0 0 0 1.5228787452803376 0.6694451763165201 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VYG[C(Carbamidomethyl (C))Q]A 4.2955 - 863 NaN NaN 170491.6 NaN 9501 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12335 56.63 NaN 329240 35 0 55157 0.261 + 16724 LYANMFERL 9 76 586.7918830476151 1171.56921316203 2 586.791748046875 MULTI HCD FTMS 0 0 0 12330 145464.078125 0.20425766956234798 20 -0.5297927856445312 5 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 93.93812099017352 0.0044227730261779084 1 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 102.19 0 0 8.7224 8.7224 91.02 0 0 0 23.903018563800984 7.424843744914611 7.424843744914611 7.424843744914611 0 2.7104093769761874 2 0.8252574989159953 0 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]R[YC(Carbamidomethyl (C))]E[VG]{I|L};[Y{I|L}]R{[YD]|[{M(Oxidation (M))|F}M]}N{[ES]|[DT]|[{I|L}C]}{I|L};[Y{I|L}]R{[YD]|[{M(Oxidation (M))|F}M]}C{[QV]|[N{I|L}]|[RA]|[KV]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV[YC(Carbamidomethyl (C))]ER{I|L} 8.7224;8.0887;7.9365;6.0938;4.2764;4.2324;3.1415;1.142 +;+;-;-;-;-;-;- + 311 + NaN NaN 127169.6 NaN 9502 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12336 56.634 NaN 506760 35 0 54996 0.261 + 26188 SPQEFIHEL 9 86 550.2749334402208 1098.5353139472415 2 550.794189453125 MULTI HCD FTMS 0 0 0 12330 14259.6298828125 0.5511188967492583 -3 0.08938217163085938 6 Unmodified _SPQEFIHEL_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 22.65808497894818 0.16459551161911185 1 [Y{I|L}]V{M(Oxidation (M))|F}VNAK 8 8 56.138 0 0 5.1103 0 0 0 161.01331905280577 161.01331905280577 12.517346757967545 0 0 0 0 0 2 0 1.055462187404089 [Y{I|L}]V{M(Oxidation (M))|F}VNAK 5.1103 - 1101 NaN NaN 175561.4 NaN 9503 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12337 56.637 NaN 361830 35 0 41602 0.262 + 24913 RYSAGWDAKFF 11 65 449.8874405743275 1346.6404923231826 3 450.2221374511719 MULTI HCD FTMS 0 0 0 12330 104681.4140625 0.7294905420952491 2 -0.04559326171875 7 Unmodified _RYSAGWDAKFF_ ENSG00000025423|ENST00000322165|HSD17B6 18.12155556500522 0.2991887039850142 1 WD[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 5 43.148 0 0 3.2041 0 0 534.2540932005866 0 534.2540932005866 0 35.70107520596089 0 0 0 1.9247425010840047 0 0 0 + WD[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2041 + + 70 + NaN NaN 143289.8 NaN 9504 2831 12330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12339 56.642 NaN 15978000 35 0 2135100 0.327 + 19451 NPSVREFVL 9 113 530.7929472343349 1059.5713415354696 2 530.7935791015625 MULTI HCD FTMS 0 0 0 12338 11243191 0.4296790558732265 4 -0.09453201293945312 1 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 176.4269993864032 3.292532597148328E-10 1 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 106.99 0 0 10.097 10.097 97.329 0 0 0 23.803834078233635 16.478174818886373 16.478174818886373 23.803834078233635 0 2.5356668758921828 1.2218487496163564 1.329689690656103 2.4846368802282015 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[PS]NVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};[PS]GGVRE{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[PS]RE{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[PS][VG]E{M(Oxidation (M))|F}V{I|L};[PS][RV]NE{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}V]ERSPNV{I|L};{[NV]|[RG]}[SG][VP]E{M(Oxidation (M))|F}V{I|L} 10.097;7.8508;7.511;6.6839;6.0762;5.9461;5.0771;5.0584;4.5366;4.2525 +;+;-;-;-;-;-;-;-;- + 3634 NaN NaN 666285.4 NaN 9505 2832 12338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12340 56.646 NaN 271560 35 0 23647 0.261 + 9972 IEHGIITNW 9 82 541.7832814380101 1081.5520099428202 2 541.7843017578125 MULTI HCD FTMS 0 0 0 12338 84061.625 0.4407408357106688 5 -0.12081527709960938 2 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 13.042465956692817 0.2476723265019929 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE[HK]V 8 8 40.623 0 0 3.756 0 0 0 110.05659245522159 110.05659245522159 22.875693080586924 0 0 0 0 0 1.6989700043360187 0 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE[HK]V 3.756 - 425 NaN NaN 122672.2 NaN 9506 2832 12338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12341 56.65 NaN 368730 35 0 71219 0.261 + 26923 SYLEKQVVTF 10 78 607.3266281640331 1212.638703394866 2 607.3264770507812 MULTI HCD FTMS 0 0 0 12338 225862.71875 0.8737619194503173 -1 0.02606964111328125 3 Unmodified _SYLEKQVVTF_ ENSG00000018699|ENST00000317907|TTC27 57.24910588100465 0.05142613675551719 1 VT{M(Oxidation (M))|F} 3 7 39.45 0 0 3.2533 0 0 847.4462167607677 0 847.4462167607677 0 23.856062735983127 0 0 0 1 0 0.3252574989159953 0 + VT{M(Oxidation (M))|F} 3.2533 + + 754 NaN NaN 138877.1 NaN 9507 2832 12338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12342 56.653 NaN 224060 35 0 16001 0.261 + 15656 LPEGIRPGTVL 11 76 576.3426159987267 1150.6706790642534 2 576.3421630859375 MULTI HCD FTMS 0 0 0 12338 25996.931640625 0.05638451870472185 10 -0.2613525390625 4 Unmodified _LPEGIRPGTVL_ ENSG00000178934|ENST00000314980|LGALS7B;ENSG00000205076|ENST00000378626|LGALS7 10.315234532428624 0.3672054350828177 1 [Y{I|L}]DTD 5 9 25.686 0 0 2.2323 0 0 0 540.4013058555221 540.4013058555221 -1.1856252710011717 0 -1.1856252710011717 0 0 0 1.5228787452803376 0 0 [Y{I|L}]DTD 2.2323 - 226 NaN NaN 130892.2 NaN 9508 2832 12338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12343 56.656 NaN 124530 35 0 23846 0.263 + 10427 IPAKLHNS 8 46 440.25529396659647 878.496034999993 2 440.7566223144531 MULTI HCD FTMS 0 0 0 12338 25795.2421875 0.7076840772899086 -4 0.11545181274414062 5 Unmodified _IPAKLHNS_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.6624 0 0 713.4169772380774 0 713.4169772380774 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6624 - 23 + NaN NaN 100621.8 NaN 9509 2832 12338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12345 56.661 NaN 7602100 35 0 1414500 0.327 + 13880 KYQEGLITL 9 110 532.8025864868974 1063.5906200405948 2 532.802490234375 MULTI HCD FTMS 0 0 0 12344 5589237.5 0.9486367045533814 -1 0.01952362060546875 1 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 179.17365725063826 1.1335045685127237E-12 1 [YK]QEG{I|L}{I|L}T{I|L} 9 0 + 109.32 0 0 10.279 10.279 91.568 0 0 0 5.31234684152075 16.478174818886373 5.31234684152075 5.31234684152075 0 2.579689690656103 0 1.6338031200885157 1.7346368802282015 + + [YK]QEG{I|L}{I|L}T{I|L};{[HG]|PP}PQEG{I|L}{I|L}T{I|L};[YK][AG]EG{I|L}{I|L}T{I|L};[YK]QE{I|L}G{I|L}T{I|L};[YQ]KEG{I|L}{I|L}T{I|L};{[HG]|PP}PQE{I|L}G{I|L}T{I|L};[YK][AG]E{I|L}G{I|L}T{I|L};[YK]QEG{I|L}T{I|L}{I|L};[YQ]KE{I|L}G{I|L}T{I|L};{[HG]|PP}PQEG{I|L}T{I|L}{I|L} 10.279;9.7793;9.413;9.1739;9.0969;8.6744;8.3081;8.2138;7.992;7.7143 +;-;-;-;-;-;-;-;-;- + 5302 NaN NaN 811283.6 NaN 9510 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12346 56.666 NaN 638360 35 0 60685 0.261 + 18252 MPDVDLHL 8 79 478.2313836346678 954.4482143361356 2 478.2311706542969 MULTI HCD FTMS 0 0 0 12344 317214.5625 0.27080932050960954 21 -0.5695114135742188 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 67.088 0 0 7.029 7.029 87.308 0 0 0 5.052520951811289 5.052520951811289 5.052520951811289 5.052520951811289 0 2.305462187404089 0 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L} 7.029;6.4996;3.752;1.5003 +;+;-;- + 241 NaN NaN 179830.6 NaN 9511 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12347 56.669 NaN 706620 35 0 82657 0.261 + 13970 KYSEVFEAI 9 90 543.2794553217416 1084.544357710283 2 543.2794799804688 MULTI HCD FTMS 0 0 0 12344 257992.84375 0.249646747311415 -4 0.1055755615234375 3 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 80.6760300276096 0.005633624786464751 1 [YK]SEV{M(Oxidation (M))|F}EA{I|L} 9 0 + 76.066 0 0 7.0137 7.0137 91.712 0 0 0 6.235899786366232 32.75551441559513 6.235899786366232 13.387634161076392 0 2.555462187404089 0 0.9876954943324545 0 + + [YK]SEV{M(Oxidation (M))|F}EA{I|L};[{M(Oxidation (M))|F}E]TTK{M(Oxidation (M))|F}EA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};[{M(Oxidation (M))|F}V]T{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};{[ET]|[MV]}T{M(Oxidation (M))|F}K{M(Oxidation (M))|F}EA{I|L};[{M(Oxidation (M))|F}E]TT{M(Oxidation (M))|F}KEA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[YD]|[{M(Oxidation (M))|F}M]}KA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EKA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L};{[ET]|[MV]}TK{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 7.0137;5.7793;5.6639;5.1087;4.8944;4.8783;4.3255;4.3255;4.1209;3.9935 +;-;-;-;-;-;-;-;-;- + 2327 NaN NaN 192190.5 NaN 9512 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12348 56.673 NaN 264580 35 0 26230 0.261 + 30907 VQVGAGPSALF 11 71 523.2877006753984 1044.5608484175966 2 523.287841796875 MULTI HCD FTMS 0 0 0 12344 86201.984375 0.14841385270242685 8 -0.20900344848632812 4 Unmodified _VQVGAGPSALF_ ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF 10.073929032068715 0.3693079378189861 1 KA{I|L}{M(Oxidation (M))|F} 4 8 21.146 0 0 2.0244 0 0 567.2653122487359 0 567.2653122487359 0 12.105319037595875 0 0 0 0 0 0 0 KA{I|L}{M(Oxidation (M))|F} 2.0244 - 76 + NaN NaN 147118.5 NaN 9513 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12349 56.676 NaN 381820 35 0 32815 0.261 + 6237 FPETTEEEL 9 79 547.7482354320387 1093.4819179308772 2 547.76318359375 MULTI HCD FTMS 0 0 0 12344 65683.421875 0.6371228811867105 5 -0.13376998901367188 5 Unmodified _FPETTEEEL_ ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP 34.40172386719151 0.0910440009062557 1 VYV[R{M(Oxidation (M))|F}]V{M(Oxidation (M))|F} 7 9 42.523 0 0 3.8888 0 0 165.0158857421771 0 165.0158857421771 0 0.7031686256740954 0 0 0 0 0 0 1.2302046884880937 VYV[R{M(Oxidation (M))|F}]V{M(Oxidation (M))|F} 3.8888 - 920 + NaN NaN 143985.2 NaN 9514 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12350 56.679 NaN 288550 35 0 12561 0.261 + 17702 MASRINTNFT 10 70 577.7853285503443 1153.5561041674885 2 578.77685546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MASRINTNFT_ ENSG00000204952|ENST00000378079|FBXO47 10.073929032068715 0.4168838835836452 1 CTNM 4 8 22.691 0 0 1.967 0 0 60.09108757039582 641.3067110650999 701.3977986354957 0 0 0 0 0 0 0 0 0.4247425010840047 CTNM 1.967 - 529 + NaN NaN 142677.1 NaN 9515 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12351 56.683 NaN 296980 35 0 20280 0.261 + 1111 AYIQESATF 9 60 515.2482487391611 1028.4819445451221 2 515.2484130859375 MULTI HCD FTMS 0 0 0 12344 58995.265625 0.6390473706489542 -3 0.07291412353515625 7 Unmodified _AYIQESATF_ ENSG00000116688|ENST00000235329|MFN2;ENST00000497302.1_1_1:12042112-12052340:+|nuORF 79.59630418116434 0.005983006570063981 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QESAT{M(Oxidation (M))|F} 9 0 + 99.575 0 0 9.6817 9.6817 93.577 0 0 0 21.751736484954378 91.61622501717439 21.751736484954378 9.208187539523749 0 2.8494850021680094 1.6989700043360187 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QESAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]ESAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]E[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA][TP]SAT{M(Oxidation (M))|F};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}SAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[PG]{[CA]|SS}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}S{M(Oxidation (M))|F};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[TA]S{M(Oxidation (M))|F} 9.6817;8.7864;7.5449;6.6495;6.0642;4.3353;4.3353;4.2112;4.0177;2.1984 +;-;-;-;-;-;-;-;-;- + 400 NaN NaN 127924.4 NaN 9516 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12352 56.686 NaN 456460 35 0 75847 0.261 + 16082 LPSSFVEKL 9 78 510.2922699194232 1018.5699869056464 2 510.2921142578125 MULTI HCD FTMS 0 0 0 12344 135692.046875 0.1881867045997669 -6 0.16103744506835938 8 Unmodified _LPSSFVEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 87.25819977447905 0.004597812622239197 1 {I|L}PSS{M(Oxidation (M))|F}VEK{I|L} 9 0 + 104.95 0 0 10.303 10.303 96.899 0 0 0 87.77819381628923 9.137342758552691 9.137342758552691 18.896292993866552 0 2.4049471895720984 1.6989700043360187 1.2302046884880937 0 + + {I|L}PSS{M(Oxidation (M))|F}VEK{I|L};{I|L}PSS{M(Oxidation (M))|F}V[VS]A{I|L};[{I|L}P][Y{I|L}][SG]EK{I|L} 10.303;8.448;4.9871 +;-;- + 362 + NaN NaN 174146.7 NaN 9517 2833 12344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12354 56.691 NaN 824840 35 0 132680 0.327 + 5698 FPAGYMYPSM 10 95 598.2433088441734 1194.4720647551467 2 598.2435302734375 MULTI HCD FTMS 0 0 0 12353 316107.875 0.8610100733251591 -42 1.1497421264648438 1 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 1 [YT]DR{M(Oxidation (M))|F}YPST 9 6 79.223 0 0 6.6325 0 0 0 60.97751271303142 60.97751271303142 45.69140270707489 0 0 0 0 1.805462187404089 2 1.1861818737241734 0 [YT]DR{M(Oxidation (M))|F}YPST 6.6325 - 2760 NaN NaN 215100.6 NaN 9518 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12355 56.695 NaN 495820 35 0 33198 0.261 + 17838 MHSSIEAVSSM 11 92 589.7601057528578 1177.5056585725156 2 589.7593994140625 MULTI HCD FTMS 0 0 0 12353 266660.53125 0.10756842189762929 20 -0.5400810241699219 2 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 27.628801355627647 0.21662447369784368 1 {M(Oxidation (M))|F}SN{I|L}QVS{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 43.795 0 0 3.7193 0 0 166.0113008283691 0 166.0113008283691 0 18.082137524177995 0 0 0 1.3182503180159344 0 1.8807196863200843 0 {M(Oxidation (M))|F}SN{I|L}QVS{[MS]|[{M(Oxidation (M))|F}A]} 3.7193 - 481 + NaN NaN 159521.3 NaN 9519 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12356 56.699 NaN 1016900 35 0 138050 0.261 + 13971 KYSEVFEAI 9 90 543.2794553217416 1084.544357710283 2 543.2793579101562 MULTI HCD FTMS 0 0 0 12353 463187.28125 0.44820312253362676 -3 0.07502365112304688 3 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 90.13494162714682 0.004522430935000059 1 [YK]SEV{M(Oxidation (M))|F}EA{I|L} 9 0 + 77.841 0 0 7.1773 7.1773 87.88 0 0 0 3.65279269351241 28.148057860866032 3.65279269351241 5.805300040193018 0 2.5752574989159953 0 1.0484550065040281 0 + + [YK]SEV{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}KEV{M(Oxidation (M))|F}EA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};[{M(Oxidation (M))|F}V]T{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EKA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EAK{I|L};[YK]SEV{M(Oxidation (M))|F}[DV]V;[{M(Oxidation (M))|F}V]T{[YD]|[{M(Oxidation (M))|F}M]}EKA{I|L} 7.1773;6.642;5.5153;4.986;4.6332;4.1769;3.7842;3.7159;3.6603;3.6476 +;-;-;-;-;-;-;-;-;- + 3134 NaN NaN 233693.8 NaN 9520 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12357 56.702 NaN 151570 35 0 16007 0.261 + 6964 FPVRDGVVL 9 58 501.2925655325258 1000.5705781318517 2 501.2929382324219 MULTI HCD FTMS 0 0 0 12353 46678.921875 0.0507703764108618 22 -0.5924530029296875 4 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 15.248480904072842 0.22861284681709862 1 VV{I|L} 3 6 27.307 0 0 2.7292 0 0 671.3362904279312 0 671.3362904279312 0 21.822581265925436 0 0 0 0.5 0 0 0 + VV{I|L} 2.7292 + + 21 NaN NaN 106765.6 NaN 9521 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12358 56.705 NaN 167780 35 0 25629 0.261 + 31523 VYGFVREAL 9 51 527.2905527680153 1052.5665526028306 2 527.2910766601562 MULTI HCD FTMS 0 0 0 12353 39412.82421875 0.0630527380421256 15 -0.3890266418457031 5 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 29.84058131909904 0.11198220037953927 1 VYG{M(Oxidation (M))|F}V 5 4 57.722 0 0 5.4839 0 0 0 484.25531946353755 484.25531946353755 38.25765943524473 0 0 0 0 1.055462187404089 2 0 0 + VYG{M(Oxidation (M))|F}V 5.4839 + + 73 + NaN NaN 123847.8 NaN 9522 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12359 56.709 NaN 159940 35 0 14319 0.261 + -1 LFHNRCFED 9 66 619.2745091041751 1236.53446527515 2 619.2841796875 MULTI HCD FTMS 0 0 0 12353 34866.98828125 0.7259493146872439 -2 0.048954010009765625 6 Carbamidomethyl (C) _LFHNRC(Carbamidomethyl (C))FED_ REV__ENSG00000088387|ENST00000682017|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-4|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-6|DOCK9;REV__nc|ENSG00000088387|Q9BZ29|DOCK9 10.073929032068715 0.27331982688540024 1 C(Carbamidomethyl (C)){M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4 -1 28.928 0 0 2.3394 0 0 667.3524037091812 0 667.3524037091812 0 7.161903266879719 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){M(Oxidation (M))|F}P{M(Oxidation (M))|F} 2.3394 - 32 NaN NaN 109974.1 NaN 9523 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12360 56.712 NaN 62847 35 0 4978.8 0.261 -1 0 33 646.0208740234375 NaN 0 646.0208740234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 V 1 -1 2.7642 0 0 0.21428 0 0 625.7000508771499 562.2227266900999 1187.9227775672498 0 0 0 0 0 0 0 0 0 V 0.21428 - 1 + NaN NaN 99000.1 NaN 9524 2834 12353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12362 56.717 NaN 658040 35 0 71476 0.327 + 5099 FEFYWRGSQ 9 93 610.2785690371663 1218.5425851411326 2 610.794677734375 MULTI HCD FTMS 0 0 0 12361 37714.4140625 0.6115776031459074 3 -0.07826614379882812 1 Unmodified _FEFYWRGSQ_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;REV__RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant 27.628801355627647 0.12213550946336599 1 {I|L}ENYYVE 7 -1 44.914 0 0 3.6859 0 0 290.12480608356856 0 290.12480608356856 0 -1.8083207142382207 -1.8083207142382207 0 0 0.5044321917401079 0 0.9604093769761876 0.3054621874040891 {I|L}ENYYVE 3.6859 - 1554 + NaN NaN 198183.3 NaN 9525 2835 12361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12363 56.721 NaN 322660 35 0 62024 0.261 + 1036 AYGHFSYEF 9 71 560.7409098772953 1119.4672668213905 2 560.7405395507812 MULTI HCD FTMS 0 0 0 12361 133206.703125 0.06744131837345498 15 -0.3958015441894531 2 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 85.35673624503755 0.00464763827098139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}YE{M(Oxidation (M))|F} 9 3 + 58.521 0 0 5.2276 5.2276 88.104 0 0 0 3.413924543379494 43.91704663422132 3.413924543379494 11.791746928241125 0 1.610924374808178 1.3979400086720375 0.7059771852360797 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}YE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}EY{M(Oxidation (M))|F};[YT]{[CT]|[{M(Oxidation (M))|F}G]}{[HG]|PP}YE{M(Oxidation (M))|F};[YT]{[CT]|[{M(Oxidation (M))|F}G]}{[HG]|PP}EY{M(Oxidation (M))|F};{[ET]|[MV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}][RN]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE][WP][NP][WE] 5.2276;4.1743;3.3305;2.2772;1.1037;0.4781 -;-;-;-;-;- 365 NaN NaN 132242.3 NaN 9526 2835 12361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12364 56.725 NaN 193230 35 0 21889 0.261 + 31524 VYGFVREAL 9 54 527.2905527680153 1052.5665526028306 2 527.2894897460938 MULTI HCD FTMS 0 0 0 12361 36296.765625 0.05806765945082377 16 -0.4286956787109375 3 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 15.248480904072842 0.22861284681709862 1 [YV]G{M(Oxidation (M))|F}V 5 4 35.674 0 0 3.3892 0 0 0 484.25336633853755 484.25336633853755 7.174165578762484 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 + [YV]G{M(Oxidation (M))|F}V 3.3892 + + 60 + NaN NaN 115590.1 NaN 9527 2835 12361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12365 56.728 NaN 215680 35 0 18375 0.261 + 25471 SFDKTASVFLL 11 62 614.3328342186713 1226.6511155041426 2 614.8340454101562 MULTI HCD FTMS 0 0 0 12361 34874.3515625 0.6817727551424285 -1 0.026073455810546875 4 Unmodified _SFDKTASVFLL_ ENSG00000051596|ENST00000265097|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;nc|ENSG00000051596|Q96J01-2|THOC3 11.494710602746466 0.35692862141139436 1 {I|L}DS 3 9 14.693 0 0 1.1978 0 0 148.11607678771958 760.3637789361936 908.4798557239133 0 0 0 0 0 0 0 0 0 {I|L}DS 1.1978 - 61 + NaN NaN 126968.7 NaN 9528 2835 12361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12366 56.731 NaN 81213 35 0 5641.3 0.263 + 21436 PVWVALVSC 9 50 487.26365663060164 NaN 0 487.2638244628906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PVWVALVSC_ REV__ENST00000477238.1_1_22:19707079-19707537:+|nuORF 4.75600775471527 0.27219989241163056 1 C 1 -1 4.6041 0 0 0.47342 0 0 129.1303883571033 737.3472384088499 866.4776267659531 0 0 0 0 0 0 0 0 0 C 0.47342 + + 1 + NaN NaN 103366.1 NaN 9529 2835 12361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12368 56.736 NaN 4220200 35 0 876350 0.327 + 33618 YITESLDHDL 10 98 603.2884950237391 1204.562437114278 2 603.2984619140625 MULTI HCD FTMS 0 0 0 12367 287639.65625 1 0 0 1 Unmodified _YITESLDHDL_ REV__ENSG00000009413|ENST00000368802|REV3L;REV__nc|ENSG00000009413|O60673-2|REV3L 37.97399986684836 0.1629881689457739 1 {I|L}YCYRE{I|L}V{M(Oxidation (M))|F} 9 -1 + 56.415 0 0 4.6834 4.6834 83.003 0 0 0 3.0204688488093723 0.6986246702928867 0.6986246702928867 4.7373077186068855 0 1.6593793813122064 1.5228787452803376 0.7302046884880937 0 {I|L}YCYRE{I|L}V{M(Oxidation (M))|F};[YV]P{M(Oxidation (M))|F}R[{I|L}T]Y{M(Oxidation (M))|F};[YV]PAHME{I|L}V{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[Y{I|L}]TER{[ET]|[MV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{[SA]|[TG]}{M(Oxidation (M))|F}M{M(Oxidation (M))|F}PP{M(Oxidation (M))|F};VYP[PS]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}V{M(Oxidation (M))|F};[YV][RD]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VY{M(Oxidation (M))|F};VYP{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[HG]|PP}E{M(Oxidation (M))|F};[Y{I|L}][SG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}PP{M(Oxidation (M))|F} 4.6834;4.2902;4.2637;4.1689;3.9586;3.9541;3.7608;3.7237;3.7121;3.6607 -;-;-;-;-;-;-;-;-;- 6206 + NaN NaN 511707.6 NaN 9530 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12369 56.741 NaN 725260 35 0 70613 0.261 + 1780 CLSPLPQGGSW 11 96 572.775046758651 1143.535540584102 2 572.7566528320312 MULTI HCD FTMS 0 0 0 12367 26058.48828125 0.47880258245812685 7 -0.19637680053710938 2 Unmodified _CLSPLPQGGSW_ REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF 17.44264345198275 0.3051040874848456 1 ES{[WT]|[RM]}YVSW 8 -1 33.436 0 0 2.9239 0 0 87.06415904725857 0 87.06415904725857 0 23.972155534585895 0 0 0 1.3494850021680094 0 1.0356668758921828 0 ES{[WT]|[RM]}YVSW 2.9239 - 1524 + NaN NaN 197783.3 NaN 9531 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12370 56.744 NaN 528060 35 0 39099 0.261 + 8542 HALSLKIVL 9 71 497.32649470797935 992.6384364827587 2 497.32647705078125 MULTI HCD FTMS 0 0 0 12367 178787.5 0.6599043731525543 3 -0.08163070678710938 3 Unmodified _HALSLKIVL_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 79.59630418116434 0.005983006570063981 1 [HA]{I|L}S{I|L}K{I|L}V{I|L} 9 0 + 71.529 0 0 7.206 7.206 91.57 0 0 0 16.100067642479345 48.62179835402634 16.100067642479345 11.593793813122062 0 1.4049471895720984 1.0457574905606752 1.0189301784845295 0 + + [HA]{I|L}S{I|L}K{I|L}V{I|L};[HA]{I|L}S{I|L}KV{I|L}{I|L};{[TV]|[{I|L}S]}[HA]{I|L}K{I|L}V{I|L};{[TV]|[{I|L}S]}[HA]{I|L}KV{I|L}{I|L};[{I|L}V]K{I|L}T[HA]V{I|L};[{I|L}V]K{I|L}T{[HG]|PP}{I|L}{I|L};[{I|L}V]K{I|L}TV[HA]{I|L} 7.206;6.038;5.2195;4.0515;2.7165;1.5485;1.5485 +;-;-;-;-;-;- + 276 NaN NaN 150421.7 NaN 9532 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12371 56.748 NaN 300570 35 0 25154 0.261 + 18149 MPDGQFKDISL 11 75 633.8069866554331 1265.599420377666 2 633.8055419921875 MULTI HCD FTMS 0 0 0 12367 217758.125 0.3632662674709802 9 -0.24882888793945312 4 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 62.78007862980855 0.028938133146045417 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 76.775 0 0 6.0663 6.0663 89.375 0 0 0 4.981979378655879 71.2909420003943 4.981979378655879 11.237125054200249 0 2.1549471895720984 0 1.305462187404089 0.2742275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KG]{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KQ]{[CT]|[{M(Oxidation (M))|F}G]}D{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KG]A{[CT]|[{M(Oxidation (M))|F}G]}D{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KG]{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}D{[QD]|[EN]|[WG]|[KD]|[RS]}[W{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.0663;5.1784;4.1862;4.0492;3.9185;3.1613;1.0509 +;-;-;-;-;-;- + 203 NaN NaN 133719.7 NaN 9533 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12372 56.751 NaN 226750 35 0 28390 0.264 + 2407 DPMRLQKIRF 10 62 435.2485225426736 1302.7237382282208 3 435.5830078125 MULTI HCD FTMS 0 0 0 12367 76653.328125 0.862616417432936 -3 0.07500839233398438 5 Unmodified _DPMRLQKIRF_ ENSG00000173928|ENST00000674460|SWSAP1;nc|ENSG00000173928|Q6NVH7|SWSAP1 5.047519993296601 0.4485863789024576 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 7 4 24.614 0 0 1.8894 0 0 318.1697031949914 0 318.1697031949914 0 17.624110322707693 0 0 0 0.24299281909993908 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 1.8894 - 50 + NaN NaN 117508.9 NaN 9534 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12373 56.754 NaN 88860 35 0 5308.1 0.261 + 25767 SLEEYSVFRF 10 46 638.8141371141248 1275.6137212950496 2 638.814453125 MULTI HCD FTMS 0 0 0 12367 23740.99609375 0.026021014286502064 24 -0.6616134643554688 6 Unmodified _SLEEYSVFRF_ ENST00000353703.8_2_20:43536121-43536193:+|nuORF 3.3196427980023873 0.4577323075863651 1 EQ 2 9 7.4743 0 0 0.58593 0 0 654.3533586014934 361.1501558893188 1015.5035144908122 0 0 0 0 0 0 0 0 0 EQ 0.58593 - 10 + NaN NaN 91674.7 NaN 9535 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12374 56.758 NaN 88697 35 0 7865.5 0.264 -1 0 49 487.24040691686383 486.23313045026384 1 487.2409973144531 MULTI HCD FTMS 0 0 0 12367 31583.5625 0.9177757101236139 4 -0.11112213134765625 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91415.7 NaN 9536 2836 12367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12376 56.763 NaN 2779100 35 0 445500 0.327 + 15803 LPHTDFTL 8 106 472.24781114897854 942.4810693647571 2 472.24786376953125 MULTI HCD FTMS 0 0 0 12375 2530182.5 0.9021175861110297 1 -0.03247833251953125 1 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 93.88341677533236 0.03025875853923581 1 [{I|L}P]HES{M(Oxidation (M))|F}T{I|L} 8 2 + 79.766 0 0 8.4634 8.4634 94.959 0 0 0 22.47425010840047 49.69080418665259 22.47425010840047 17.715973736463198 0 1.579689690656103 1.6989700043360187 0.9634679910804405 0 [{I|L}P]HES{M(Oxidation (M))|F}T{I|L};[{I|L}P]HES{M(Oxidation (M))|F}{I|L}T;[{I|L}T]{M(Oxidation (M))|F}DTHP{I|L};{[ES]|[DT]|[{I|L}C]}HP{I|L}{M(Oxidation (M))|F}T{I|L};[HT]DP{I|L}{M(Oxidation (M))|F}T{I|L};[{I|L}P]HES{I|L}{M(Oxidation (M))|F}T;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ES{I|L}{M(Oxidation (M))|F}T{I|L};[{I|L}T]{M(Oxidation (M))|F}[HS]EP{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T]{I|L}DTHP{I|L} 8.4634;6.5836;5.5571;5.2607;5.1139;5.0537;4.9843;4.6234;4.4781;4.4195 -;-;-;-;-;-;-;-;-;- 4329 NaN NaN 508746.6 NaN 9537 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12377 56.767 NaN 2950600 35 0 475190 0.261 -1 DPRNATSVCI 10 124 566.7738872279571 1131.533221522714 2 566.774658203125 MULTI HCD FTMS 0 0 0 12375 1666016.75 0.03883887637322955 23 -0.6353302001953125 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 1 P{M(Oxidation (M))|F}MGSVSW 8 -1 89.335 0 0 7.8951 0 0 222.09781723947066 0 222.09781723947066 0 64.91889114695063 0 0 0 2.774227503252014 0 1.524227503252014 0 P{M(Oxidation (M))|F}MGSVSW 7.8951 - 9058 + NaN NaN 535561.9 NaN 9538 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12378 56.771 NaN 3028900 35 0 627860 0.239 + 15704 LPESENLQEF 10 103 603.2884950237391 1204.562437114278 2 603.3012084960938 MULTI HCD FTMS 0 0 0 12375 268265.21875 0.9326433713883984 1 -0.03247833251953125 3 Unmodified _LPESENLQEF_ ENSG00000169710|ENST00000306749|FASN 34.40172386719151 0.19398797222092762 1 {I|L}YCYRE{I|L}V{M(Oxidation (M))|F} 9 7 + 53.131 0 0 4.4108 4.4108 81.175 0 0 0 1.5984259633432885 1.5984259633432885 1.5984259633432885 1.5984259633432885 0 1.3979400086720375 1.5228787452803376 0.7302046884880937 0 {I|L}YCYRE{I|L}V{M(Oxidation (M))|F};[YV]P{M(Oxidation (M))|F}R[{I|L}T]Y{M(Oxidation (M))|F};{I|L}YTEM{M(Oxidation (M))|F}RV{M(Oxidation (M))|F};[YV]{[DS]|[MA]|[CV]|TT}[HM]{I|L}PP{M(Oxidation (M))|F};[YV]{[SA]|[TG]}{M(Oxidation (M))|F}M{M(Oxidation (M))|F}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}AWY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}AWY{M(Oxidation (M))|F};[YV]P{[CA]|SS}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VY{M(Oxidation (M))|F};[Y{I|L}][SG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}PP{M(Oxidation (M))|F};[YV][RD]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VY{M(Oxidation (M))|F} 4.4108;4.2781;4.2224;4.1034;4.0802;4.0721;3.9069;3.8265;3.7868;3.784 -;-;-;-;-;-;-;-;-;- 8692 + NaN NaN 479415.2 NaN 9539 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12379 56.774 NaN 1150200 35 0 108790 0.261 + 7938 GDTWQSVVSW 10 104 582.7692560816736 1163.523959230147 2 582.7697143554688 MULTI HCD FTMS 0 0 0 12375 577626.5625 0.061451124825155336 23 -0.6353302001953125 4 Unmodified _GDTWQSVVSW_ REV__ENSG00000171596|ENST00000305141|NMUR1 32.78568957990786 0.20801173326193015 1 SVSTYVSW 8 -1 90.035 0 0 7.7381 0 0 236.07793923772505 0 236.07793923772505 0 67.33176487404427 0 0 0 2.6479400086720375 0 1.2689301784845295 0 SVSTYVSW 7.7381 - 8966 + NaN NaN 267809.8 NaN 9540 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12380 56.777 NaN 876490 35 0 77371 0.261 -1 IETHGMAVSW 10 104 573.7657539071055 1145.5169548810109 2 573.764404296875 MULTI HCD FTMS 0 0 0 12375 338843.96875 0.049398359080782 23 -0.6353302001953125 5 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 36.12702656103203 0.1790159924230938 1 SSVSTYVSW 9 -1 77.446 0 0 6.7608 0 0 131.0358890624546 0 131.0358890624546 0 62.07096191314258 0 0 0 2.763632853717045 0 1.1496498648046138 0 SSVSTYVSW 6.7608 - 7616 + NaN NaN 226349.1 NaN 9541 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12381 56.78 NaN 928540 35 0 81175 0.261 + 24359 RYIFAKNLF 9 99 586.3348350537557 1170.6551171743113 2 586.334716796875 MULTI HCD FTMS 0 0 0 12375 315031.375 0.42177903573677417 -3 0.07186126708984375 6 Unmodified _RYIFAKNLF_ ENSG00000114956|ENST00000264093|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK 92.4914307365334 0.004460681868130716 1 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F} 10 5 + 95.606 0 0 8.1668 8.1668 91.021 0 0 0 24.88438100576431 63.957261176729844 24.88438100576431 9.164539485499262 0 0.9634679910804405 2 0.5994850021680094 1.916386562212267 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KAHSKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KA[PG]VVN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[QP]VVN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KHV{M(Oxidation (M))|F}[PG]{I|L}{M(Oxidation (M))|F};RY{I|L}A{M(Oxidation (M))|F}KN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[WH][{I|L}T]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HV]S[{I|L}T]{I|L}{M(Oxidation (M))|F};RY{I|L}A{M(Oxidation (M))|F}KGG{I|L}{M(Oxidation (M))|F};RY{I|L}{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F} 8.1668;7.384;5.5378;5.2295;4.853;4.2295;3.9285;3.6323;3.4429;3.2053 -;-;-;-;-;-;-;-;-;+ + 1401 NaN NaN 225089 NaN 9542 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12382 56.783 NaN 552170 35 0 31694 0.261 + 32065 VYQKLSIQL 9 106 546.3266508265411 1090.6387487198822 2 546.3267211914062 MULTI HCD FTMS 0 0 0 12375 61437.70703125 0.5340051268122092 1 -0.03247833251953125 7 Unmodified _VYQKLSIQL_ ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6;SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 55.23464941255904 0.024247875903973527 1 [YV]QK{I|L}S{I|L}Q{I|L} 9 0 + 37.904 0 0 3.4754 3.4754 84.888 0 0 0 4.390281607937183 4.390281607937183 4.390281607937183 9.208187539523756 0 1.9238773680566281 1.3010299956639813 0 0.48965182871044377 + + [YV]QK{I|L}S{I|L}Q{I|L};[YV][AG]K{I|L}S{I|L}Q{I|L};[YV]QK{I|L}S{I|L}[AG]{I|L};[YV]QK{I|L}SAAV{I|L};[YV]QK{I|L}[Q{I|L}]S{I|L};[YV]QK{I|L}[QT]V{I|L};[YV][AG]K{I|L}SAAV{I|L};[YV]QK{I|L}{[QN]|[E{I|L}]|[KN]}[KA];[YV][AG]K{I|L}[Q{I|L}]S{I|L};[YV][AG]K{I|L}[QT]V{I|L} 3.4754;2.6311;2.2285;2.089;1.774;1.417;1.2487;0.98537;0.92969;0.57275 +;-;-;-;-;-;-;-;-;- + 1149 + NaN NaN 172640.6 NaN 9543 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12383 56.787 NaN 410580 35 0 34439 0.261 -1 YPFMSQREL 9 71 593.7821483588662 1185.5497437845322 2 593.7822265625 MULTI HCD FTMS 0 0 0 12375 63598.1953125 0.3974603085013845 -6 0.14688491821289062 8 Oxidation (M) _YPFM(Oxidation (M))SQREL_ PLXNB3|p.S755F|1|0.19|ENSG00000198753|chrX:153771320-153771320|C/T|missense_variant 20.453626601364224 0.18364154288633264 1 DHNVE{I|L} 6 -1 45.853 0 0 3.8676 0 0 460.2209645001969 0 460.2209645001969 0 38.62063790808534 0 0 0 0.3494850021680094 0 0.4247425010840047 0.75 DHNVE{I|L} 3.8676 - 160 NaN NaN 145915.7 NaN 9544 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12384 56.79 NaN 1158200 35 0 325060 0.264 + 2821 DYLEKYYKF 9 90 423.54463972726137 1267.6120897819842 3 423.54443359375 MULTI HCD FTMS 0 0 0 12375 190000.265625 0.3313109859299832 -4 0.10129165649414062 9 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 79.59630418116434 0.005983006570063981 1 DY{I|L}EKYYK{M(Oxidation (M))|F} 9 0 + 105.1 0 0 8.2915 8.2915 96.37 0 0 0 95.81215024481537 14.973024840566467 14.973024840566467 39.463950151760656 0 1.6237125054200234 2 0.805462187404089 0 + + DY{I|L}EKYYK{M(Oxidation (M))|F};DY{I|L}[{M(Oxidation (M))|F}V]{[CA]|SS}YK{M(Oxidation (M))|F};[YT]QQKVE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8.2915;5.1782;3.0521 +;-;- + 377 + NaN NaN 263671.8 NaN 9545 2837 12375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12386 56.795 NaN 2083900 35 0 217150 0.327 + 22850 QYMERLQLL 9 115 605.3181631147365 1208.621773296273 2 605.3184814453125 MULTI HCD FTMS 0 0 0 12385 953814.0625 0.8213186326813563 -1 0.03247833251953125 1 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 149.91393105778798 8.917243180786556E-06 1 [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L} 9 0 + 69.037 0 0 5.712 5.712 88.154 0 0 0 2.753863481026329 34.13621659931256 2.753863481026329 9.208187539523756 0 2.385151878060192 0 0.9802046884880937 2.4247425010840047 + + [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L};[YQ]{M(Oxidation (M))|F}ER{I|L}[AG]{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}]Q{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}][AG]{I|L}{I|L} 5.712;4.9502;4.108;3.3461 +;-;-;- + 1000 NaN NaN 397456.3 NaN 9546 2838 12385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12387 56.799 NaN 947740 35 0 122500 0.261 + 26189 SPQEFIHEL 9 89 550.2749334402208 1098.5353139472415 2 550.794189453125 MULTI HCD FTMS 0 0 0 12385 23538.97265625 0.9097552143734022 4 -0.10805892944335938 2 Unmodified _SPQEFIHEL_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 40.72490554402381 0.06201705472789164 1 [Y{I|L}]V{M(Oxidation (M))|F}VNAK 8 8 55.201 0 0 5.025 0 0 0 161.01443616334555 161.01443616334555 5.8534811358448735 0 0 0 0 0 1.6989700043360187 0 1.086696871556164 [Y{I|L}]V{M(Oxidation (M))|F}VNAK 5.025 - 2685 NaN NaN 233996.6 NaN 9547 2838 12385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12388 56.803 NaN 294220 35 0 53764 0.261 + 8187 GQEQDELSF 9 54 526.7305724910303 1051.4465920488606 2 526.7303466796875 MULTI HCD FTMS 0 0 0 12385 129018.328125 0.9099660519354144 -3 0.07826614379882812 3 Unmodified _GQEQDELSF_ ENSG00000124507|ENST00000244458|PACSIN1 36.12702656103203 0.08312389501731911 1 {I|L}S{M(Oxidation (M))|F} 3 6 45.445 0 0 4.3222 0 0 686.250250214414 0 686.250250214414 0 27.998037644757048 0 0 0 1.5 0 0.4247425010840047 0 + {I|L}S{M(Oxidation (M))|F} 4.3222 + + 45 NaN NaN 125583 NaN 9548 2838 12385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12389 56.806 NaN 337970 35 0 23605 0.261 + 34333 YPEDVSEEL 9 82 540.7402361756509 1079.4659194181017 2 540.7406005859375 MULTI HCD FTMS 0 0 0 12385 72186.3203125 1 0 0 4 Unmodified _YPEDVSEEL_ ENSG00000147065|ENST00000360270|MSN 30.636539890814138 0.10832830463492794 1 SEE{I|L} 4 5 38.716 0 0 3.5866 0 0 603.2543035392524 0 603.2543035392524 0 24.446603393793108 0 0 0 1.1549471895720984 0 0 0 + SEE{I|L} 3.5866 + + 426 NaN NaN 131230.6 NaN 9549 2838 12385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12390 56.81 NaN 500500 35 0 43748 0.261 + 18016 MLLEKPTEF 9 96 554.2900167873495 1106.5654806414989 2 555.3067016601562 MULTI HCD FTMS 0 0 0 12385 19710.142578125 0.47870011643526506 -4 0.104339599609375 5 Unmodified _MLLEKPTEF_ tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1 13.50788311687929 0.24365122550260465 1 [Y{I|L}]A 3 8 27.447 0 0 2.4804 0 0 0 756.3583846329792 756.3583846329792 10.245593720067344 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]A 2.4804 - 1157 NaN NaN 154674 NaN 9550 2838 12385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12391 56.813 NaN 159560 35 0 7286.4 0.262 -1 LWMRFSMSML 10 85 453.88038074765984 1358.6193128431796 3 453.881103515625 MULTI HCD FTMS 0 0 0 12385 16330.2744140625 0.05725964155580212 -12 0.3242454528808594 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LWM(Oxidation (M))RFSMSML_ ENST00000216038.5_1_22:32793972-32794044:-|nuORF 3.876331618118854 0.45478566516190344 1 [YV]S 3 -1 24.437 0 0 1.7987 0 0 0 1006.4273627301515 1006.4273627301515 7.447274948966935 0 0 0 0 0 2 0 0 [YV]S 1.7987 - 93 NaN NaN 101645.9 NaN 9551 2838 12385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12393 56.818 NaN 3170800 35 0 599400 0.326 + 13881 KYQEGLITL 9 107 532.8025864868974 1063.5906200405948 2 532.802978515625 MULTI HCD FTMS 0 0 0 12392 2122916.5 0.36031328291238274 5 -0.14763259887695312 1 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 128.93241758739586 0.0006697181619526092 1 [YK]QEG{I|L}{I|L}T{I|L} 9 0 + 98.254 0 0 9.238 9.238 89.941 0 0 0 3.4678748622465605 16.478174818886373 3.4678748622465605 3.4678748622465605 0 2.6747425010840047 0 1.079689690656103 1.086696871556164 + + [YK]QEG{I|L}{I|L}T{I|L};{[HG]|PP}PQEG{I|L}{I|L}T{I|L};[YQ]KEG{I|L}{I|L}T{I|L};[YK][AG]EG{I|L}{I|L}T{I|L};[YK]QEG{I|L}T{I|L}{I|L};{[HG]|PP}PQEG{I|L}T{I|L}{I|L};{[HG]|PP}P[AG]EG{I|L}{I|L}T{I|L};[YQ]KEG{I|L}T{I|L}{I|L};[YK][AG]EG{I|L}T{I|L}{I|L};{[HG]|PP}P[AG]EG{I|L}T{I|L}{I|L} 9.238;8.9119;8.5556;8.3722;7.3803;7.0542;7.0285;6.6979;6.5145;5.4767 +;-;-;-;-;-;-;-;-;- + 3244 NaN NaN 568822.4 NaN 9552 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12394 56.822 NaN 1289400 35 0 186840 0.261 + 13972 KYSEVFEAI 9 96 543.2794553217416 1084.544357710283 2 543.2794799804688 MULTI HCD FTMS 0 0 0 12392 952742.625 0.9219212978894468 2 -0.052364349365234375 2 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 110.5527297667825 0.0028521687250969148 1 [YK]SEV{M(Oxidation (M))|F}EA{I|L} 9 0 + 82.259 0 0 7.5847 7.5847 94.691 0 0 0 3.65279269351241 32.15681882079494 3.65279269351241 29.815986760461257 0 2.6237125054200234 0 1.316901560044258 0 + + [YK]SEV{M(Oxidation (M))|F}EA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};[YK]SEV{M(Oxidation (M))|F}[DV]V;[YK]SEV{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EKA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EAK{I|L};[{M(Oxidation (M))|F}V]T{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L} 7.5847;4.8355;4.4415;4.1322;3.797;3.6583;3.5825;3.2959;3.0621;2.9469 +;-;-;-;-;-;-;-;-;- + 3280 NaN NaN 281976.7 NaN 9553 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12395 56.826 NaN 1243100 35 0 220270 0.261 + 16083 LPSSFVEKL 9 93 510.2922699194232 1018.5699869056464 2 510.292236328125 MULTI HCD FTMS 0 0 0 12392 721050.125 1 0 0 3 Unmodified _LPSSFVEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 136.39213081522345 0.00021731600835925866 1 {I|L}PSS{M(Oxidation (M))|F}VEK{I|L} 9 0 + 100.17 0 0 9.8339 9.8339 95.385 0 0 0 75.42895862232356 10.558933348155222 10.558933348155222 12.57007180900061 0 2.690614065464281 1.6989700043360187 1.4916440611282626 0.2302046884880938 + + {I|L}PSS{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]SS{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]SS{M(Oxidation (M))|F}D{I|L}K{I|L};[{I|L}P]SS{M(Oxidation (M))|F}DK{I|L}{I|L};[{I|L}P]SS{M(Oxidation (M))|F}V[SG]{I|L}{I|L};[{I|L}P]SS{M(Oxidation (M))|F}VT[VG]{I|L};[{I|L}P]S[YG]{I|L}EK{I|L};[PS]{I|L}S{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]S[YG]E{I|L}K{I|L};[PS]{I|L}S{M(Oxidation (M))|F}D{I|L}K{I|L} 9.8339;8.5999;7.9975;6.8862;6.5845;6.5845;5.9525;5.5543;5.3502;4.952 +;+;-;-;-;-;-;-;-;- + 1798 + NaN NaN 271572.9 NaN 9554 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12396 56.829 NaN 484240 35 0 43929 0.261 + 18253 MPDVDLHL 8 81 478.2313836346678 954.4482143361356 2 478.23114013671875 MULTI HCD FTMS 0 0 0 12392 219439.78125 0.1873379884729909 27 -0.7398185729980469 4 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 1 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 56.732 0 0 5.9439 5.9439 83.978 0 0 0 34.25250945692483 1.32576888900239 1.32576888900239 2.156818820794939 0 2.0356668758921828 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{M(Oxidation (M))|F}PDV[H{I|L}]D{I|L};[KA]EM{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};[KA]EM{[{M(Oxidation (M))|F}C]|[YS]}GG{I|L} 5.9439;5.718;3.2424;2.482;2.0035;1.6935;1.0331 +;+;-;-;-;-;- + 355 + NaN NaN 154327.6 NaN 9555 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12397 56.833 NaN 552060 35 0 33894 0.261 -1 KYYIEFMEK 9 86 633.8069866554331 1265.599420377666 2 634.8139038085938 MULTI HCD FTMS 0 0 0 12392 267826.3125 1 0 0 5 Oxidation (M) _KYYIEFM(Oxidation (M))EK_ tr|U7STF9|U7STF9_FUSNUDJ-1/PfpIdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01043PE=4SV=1 22.736283301280096 0.1639198954644489 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EVKE{I|L}M 9 -1 73.559 0 0 5.8122 0 0 0 142.0316854683389 142.0316854683389 26.08710483809125 0 0 0 0 0.28872548999643577 2 1.3851518780601921 0.2742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EVKE{I|L}M 5.8122 - 2260 NaN NaN 164485.9 NaN 9556 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12398 56.836 NaN 264010 35 0 14070 0.261 -1 FPDRIMNTF 9 74 578.7764311978499 1155.5383094624997 2 578.7767333984375 MULTI HCD FTMS 0 0 0 12392 92517.171875 0.03467339763211533 52 -1.4289093017578125 6 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 32.037481411007896 0.10189719824197178 1 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4 -1 46.23 0 0 4.0007 0 0 628.335020802591 0 628.335020802591 0 33.667053245199625 0 0 0 0.7742275032520141 0 0.2742275032520141 0.3807196863200844 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4.0007 + + 98 NaN NaN 119030.1 NaN 9557 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12399 56.839 NaN 609060 35 0 116420 0.261 + 8415 GYSEHFVEF 9 66 557.7455165912979 1113.4764802493958 2 557.7454833984375 MULTI HCD FTMS 0 0 0 12392 85715.0625 0.01830630299979465 -6 0.15663909912109375 7 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 71.13359017698441 0.008721403657255008 1 {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4 5 45.165 0 0 4.0562 0 0 573.2194691388687 0 573.2194691388687 0 36.18562527100117 0 0 0 1.274227503252014 0 0.3494850021680094 0 + {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4.0562 + + 152 NaN NaN 167477.4 NaN 9558 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12400 56.843 NaN 366050 35 0 76884 0.263 + 2607 DTYSWLLKER 10 62 437.5626109832001 1309.6660035498003 3 437.5628356933594 MULTI HCD FTMS 0 0 0 12392 81739.5390625 0.7609954605728227 -2 0.055347442626953125 8 Unmodified _DTYSWLLKER_ ENSG00000157601|ENST00000398598|MX1 7.0370850670814 0.43805529467587806 1 {M(Oxidation (M))|F} 1 10 13.979 0 0 1.0674 0 0 1144.5871441521424 0 1144.5871441521424 0 1.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0674 - 22 + NaN NaN 141763 NaN 9559 2839 12392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12402 56.847 NaN 3059500 35 0 403000 0.327 + 19452 NPSVREFVL 9 115 530.7929472343349 1059.5713415354696 2 530.7933349609375 MULTI HCD FTMS 0 0 0 12401 1938261 0.07407418023191956 12 -0.3309326171875 1 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 168.5375213894962 4.622051367253751E-09 1 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 100.13 0 0 9.4497 9.4497 97.168 0 0 0 26.99355922161095 67.62680805705642 26.99355922161095 28.005562815790668 0 2.1989700043360187 1.154901959985743 1.089136830878453 2.471848749616356 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};[NP]SVRE[{I|L}V]{M(Oxidation (M))|F};{[NV]|[RG]}[PS]RE{M(Oxidation (M))|F}V{I|L};[NP]SVRV{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]ERSPNV{I|L};[{M(Oxidation (M))|F}E]VRSPNV{I|L};{[NV]|[RG]}[SG][VP]E{M(Oxidation (M))|F}V{I|L};NP[RV]SE{M(Oxidation (M))|F}V{I|L} 9.4497;6.8066;5.7205;5.4875;5.2588;4.3011;4.2415;3.9574;3.6956;3.6451 +;+;-;-;-;-;-;-;-;- + 2267 NaN NaN 544352.7 NaN 9560 2840 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12403 56.852 NaN 790710 35 0 129520 0.261 + 33348 YGEYRMETF 9 96 598.2575618670986 NaN 0 598.2435302734375 PEAK HCD FTMS 0 0 0 12401 9225.9638671875 0.4856455891646714 1 -0.0228729248046875 2 Unmodified _YGEYRMETF_ REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 19.256988751693697 0.19238547928067054 1 TSPY{M(Oxidation (M))|F}RD 7 -1 33.211 0 0 2.7803 0 0 64.02542270705597 261.08809432908265 325.1135170361386 0 0 0 0 0 0 0 1.1307196863200843 0 TSPY{M(Oxidation (M))|F}RD 2.7803 - 531 + NaN NaN 218789.6 NaN 9561 2840 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12404 56.855 NaN 376350 35 0 23141 0.261 + 17839 MHSSIEAVSSM 11 78 589.7601057528578 1177.5056585725156 2 589.7593994140625 MULTI HCD FTMS 0 0 0 12401 183429.484375 0.07399377804890125 26 -0.7103271484375 3 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 34.40172386719151 0.17300472122796048 1 SVS{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 36.259 0 0 3.0793 0 0 668.2906971662125 0 668.2906971662125 0 11.566570457046751 0 0 0 0.7742275032520141 0 1.0189301784845295 0 SVS{[MS]|[{M(Oxidation (M))|F}A]} 3.0793 - 208 NaN NaN 144868.2 NaN 9562 2840 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12405 56.859 NaN 631280 35 0 116720 0.263 -1 YMKSTYEQVDL 11 81 464.88158313627684 1391.6229200090306 3 465.2317199707031 MULTI HCD FTMS 0 0 0 12401 7804.23046875 0.5361801568848202 -2 0.05236053466796875 4 Oxidation (M) _YM(Oxidation (M))KSTYEQVDL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 7.477065608646677 0.3861287967437539 1 AE[HN]VD{I|L} 7 -1 34.346 0 0 2.468 0 0 595.2627613794431 0 595.2627613794431 0 12.294416723219399 0 0 0 0.2302046884880938 0 0.9604093769761874 0 AE[HN]VD{I|L} 2.468 - 888 + NaN NaN 183379.8 NaN 9563 2840 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12406 56.862 NaN 579490 35 0 64685 0.261 + 13374 KYNDTFWKEF 10 70 459.88726742564097 1376.639972877123 3 459.8870849609375 MULTI HCD FTMS 0 0 0 12401 129390.515625 0.6066878434921337 -4 0.11112213134765625 5 Unmodified _KYNDTFWKEF_ ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P 17.571907917122694 0.346750318923987 1 {M(Oxidation (M))|F}T[C(Carbamidomethyl (C))Q][{I|L}T] 6 9 25.022 0 0 1.8176 0 0 608.2962124132987 0 608.2962124132987 0 3.032731160692137 0 0 0 1 0 0.7742275032520141 0 {M(Oxidation (M))|F}T[C(Carbamidomethyl (C))Q][{I|L}T] 1.8176 - 69 + NaN NaN 175642.5 NaN 9564 2840 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12407 56.865 NaN 121440 35 0 24028 0.261 + 1125 AYLAQSPQL 9 50 495.76648156233915 989.5184101914783 2 495.7668762207031 MULTI HCD FTMS 0 0 0 12401 56923.26171875 0.4395151998822519 6 -0.17047500610351562 6 Unmodified _AYLAQSPQL_ ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1 22.736283301280096 0.1639198954644489 1 {[QN]|[E{I|L}]|[KN]}{[ET]|[MV]}V[RP]{M(Oxidation (M))|F} 8 7 + 32.91 0 0 3.3259 3.3259 80.887 0 0 0 6.9923339537769635 -1.2371250542002343 -1.2371250542002343 3.4948500216800937 0 0.8807196863200843 1.6989700043360187 0 0 {[QN]|[E{I|L}]|[KN]}{[ET]|[MV]}V[RP]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]}V{[WT]|[RM]}{I|L};[{I|L}T]AASQ{[WT]|[RM]}{I|L};[{I|L}T][QT]Q{[WT]|[RM]}{I|L} 3.3259;2.9727;2.0883;1.7379 -;-;-;- 104 NaN NaN 100753.7 NaN 9565 2840 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12409 56.87 NaN 846980 35 0 94270 0.327 + 23676 RQHKFVQF 8 107 545.3004349726062 1088.5863170120124 2 545.7879028320312 MULTI HCD FTMS 0 0 0 12408 41524.5078125 0.8592874290055301 3 -0.09526824951171875 1 Unmodified _RQHKFVQF_ REV__ENSG00000142556|ENST00000270649|ZNF614 19.438996006549623 0.45076845602799126 1 [WK]NPTAGVA 9 -1 33.163 0 0 3.0465 0 0 0 161.07724001432373 161.07724001432373 -1.1469636575022832 0 -1.1469636575022832 0 0 0 0 0 1.1382104921644451 [WK]NPTAGVA 3.0465 - 2106 NaN NaN 207743.2 NaN 9566 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12410 56.875 NaN 411750 35 0 78458 0.261 + 13104 KYLENYYDL 9 75 610.7949143544787 1219.5752757757573 2 610.7954711914062 MULTI HCD FTMS 0 0 0 12408 137701.234375 0.49571434357024974 4 -0.11483383178710938 2 Unmodified _KYLENYYDL_ ENSG00000149968|ENST00000299855|MMP3 67.08073823543168 0.010032840856489532 1 ENYYD{I|L} 6 3 74.945 0 0 6.1452 0 0 404.24278456855626 0 404.24278456855626 0 58.82552069236061 0 0 0 2.274227503252014 0 0.28872548999643577 1.055462187404089 + ENYYD{I|L} 6.1452 + + 340 NaN NaN 142632.5 NaN 9567 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12411 56.878 NaN 212990 35 0 41463 0.261 + 1037 AYGHFSYEF 9 53 560.7409098772953 1119.4672668213905 2 560.7403564453125 MULTI HCD FTMS 0 0 0 12408 95220 0.04820900288699629 21 -0.5800209045410156 3 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 28.486842064014134 0.11819662193267319 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}YE{M(Oxidation (M))|F} 9 3 + 36.941 0 0 3.2999 3.2999 82.31 0 0 0 5.742946587693972 33.445984148897814 5.742946587693972 6.81749681984066 0 1 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}YE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}EY{M(Oxidation (M))|F} 3.2999;2.6909 -;- 57 NaN NaN 115740.3 NaN 9568 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12412 56.882 NaN 232010 35 0 17551 0.261 + 8919 HPDIFIEHF 9 60 577.7853285503443 1153.5561041674885 2 577.7852783203125 MULTI HCD FTMS 0 0 0 12408 80795.84375 0.8646485813295057 3 -0.09526824951171875 4 Unmodified _HPDIFIEHF_ ENSG00000121690|ENST00000241051|DEPDC7;nc|ENSG00000121690|Q96QD5-2|DEPDC7 46.020951573049366 0.037705236580089195 1 EH{M(Oxidation (M))|F} 3 6 31.031 0 0 2.69 0 0 722.3790760724625 0 722.3790760724625 0 4.348331157524967 0 0 0 0.5 0 1 0 + EH{M(Oxidation (M))|F} 2.69 + + 38 NaN NaN 129888.3 NaN 9569 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12413 56.885 NaN 627940 35 0 42623 0.261 + 4973 FAVLEDHTL 9 97 522.7715175948975 1043.528482256595 2 522.26953125 MULTI HCD FTMS 0 0 0 12408 132410.578125 0.1166010498759892 -6 0.15349960327148438 5 Unmodified _FAVLEDHTL_ CCDC50|p.A43Hfs*25|1|0.22|ENSG00000152492|chr3:191358011-191358011|G/-|frameshift_variant;CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant;ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50 28.486842064014134 0.11819662193267319 1 P{I|L}QASPH{M(Oxidation (M))|F} 8 8 70.228 0 0 6.7299 0 0 148.07424743730888 0 148.07424743730888 0 39.14651886415513 0 0 0 0.5796896906561032 0 1.6307196863200843 0.4247425010840047 P{I|L}QASPH{M(Oxidation (M))|F} 6.7299 - 1199 + NaN NaN 192312.2 NaN 9570 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12414 56.888 NaN 424690 35 0 38810 0.261 -1 AAMVEFYTM 9 82 547.7303406953109 NaN 0 547.7481079101562 PEAK HCD FTMS 0 0 0 12408 23251.642578125 0.7333273294757111 -2 0.052364349365234375 6 2 Oxidation (M) _AAM(Oxidation (M))VEFYTM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 10.823927491677226 0.2427956001690155 1 VVPV[R{M(Oxidation (M))|F}]V 7 -1 18.689 0 0 1.7092 0 0 131.93763831331597 162.02334009342033 293.96097840673633 0 0 0 0 0 0 0 0 0.3494850021680094 VVPV[R{M(Oxidation (M))|F}]V 1.7092 - 368 + NaN NaN 142839.7 NaN 9571 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12415 56.892 NaN 161730 35 0 18353 0.263 + 32787 WSFYFGALSF 10 54 408.8624594140054 1223.5655488422162 3 408.8630065917969 MULTI HCD FTMS 0 0 0 12408 5867.48974609375 0.20265618040166086 2 -0.062381744384765625 7 Unmodified _WSFYFGALSF_ ENSG00000075461|ENST00000262138|CACNG4;ENSG00000166862|ENST00000300105|CACNG2 6.630372943996041 0.44020808660041416 1 G{M(Oxidation (M))|F} 2 8 15.573 0 0 1.2728 0 0 1001.464838858621 0 1001.464838858621 0 -0.8804562952784067 -0.8804562952784067 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.2728 - 32 + NaN NaN 108023.1 NaN 9572 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12416 56.895 NaN 165570 35 0 19568 0.261 + 33476 YHSMPTYL 8 49 506.23375482749594 1010.4529567217919 2 506.7355651855469 MULTI HCD FTMS 0 0 0 12408 17907.234375 0.06069695981086469 -21 0.5584487915039062 8 Unmodified _YHSMPTYL_ ENSG00000107331|ENST00000341511|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;ENST00000487109.5_1_9:139906084-139911410:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2 5.230669730166228 0.5342319408533849 1 Y{I|L} 2 6 25.969 0 0 2.57 0 0 716.2952126715012 0 716.2952126715012 0 22.47425010840047 0 0 0 0.5 0 0 0 + Y{I|L} 2.57 + + 4 NaN NaN 108519.1 NaN 9573 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12417 56.898 NaN 75935 35 0 4860.1 0.261 + -1 VWINLALM 8 43 488.26996501322463 NaN 0 488.2428283691406 PEAK HCD FTMS 0 0 0 12408 9659.251953125 0.42940639470813435 1 -0.032825469970703125 9 Oxidation (M) _VWINLALM(Oxidation (M))_ REV__ENSG00000162976|ENST00000295083|SLC66A3;REV__ENST00000428481.1_1_2:11300816-11317951:+|nuORF;REV__ENST00000445921.5_1_2:11312097-11317951:+|nuORF;REV__nc|ENSG00000162976|Q8N755-2|SLC66A3 2.8892196856762586 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.71724 0 0 164.07311986844303 694.3414400690061 858.4145599374492 0 0 0 0 0 0 0 0 0 {I|L} 0.71724 + + 6 + NaN NaN 93233.6 NaN 9574 2841 12408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12419 56.903 NaN 227050 35 0 22846 0.327 + -1 KKMPQQRPKF 10 63 435.2485225426736 1302.7237382282208 3 435.2486267089844 MULTI HCD FTMS 0 0 0 12418 59206.27734375 0.6965284345488385 4 -0.114776611328125 1 Oxidation (M) _KKM(Oxidation (M))PQQRPKF_ REV__ENST00000330292.4_17:80207889-80208285:+|nuORF 3.5870582119611467 0.4563168352879256 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 0.95755 0 0 1137.6449856420863 0 1137.6449856420863 0 3.0102999566398125 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.95755 + + 52 + NaN NaN 116028.3 NaN 9575 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12420 56.908 NaN 169230 35 0 18575 0.261 + 8543 HALSLKIVL 9 58 497.32649470797935 992.6384364827587 2 497.3266906738281 MULTI HCD FTMS 0 0 0 12418 39280.296875 0.14498351219488564 9 -0.24237060546875 2 Unmodified _HALSLKIVL_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 38.175570920033316 0.07371992880350783 1 [HA]{I|L}{[TV]|[{I|L}S]}K{I|L}V{I|L} 9 0 + 51.964 0 0 5.235 5.235 90.336 0 0 0 14.792418483414949 23.051303186493683 14.792418483414949 26.365006360318684 0 1.086696871556164 1.3979400086720375 0.3807196863200844 0 + + [HA]{I|L}{[TV]|[{I|L}S]}K{I|L}V{I|L};[HA]{I|L}{[TV]|[{I|L}S]}V[K{I|L}]{I|L} 5.235;2.5789 +;- + 105 NaN NaN 119509.3 NaN 9576 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12421 56.911 NaN 184190 35 0 13507 0.261 -1 IYTDMGRFTI 10 52 616.8028732356348 1231.5911935380695 2 616.8020629882812 MULTI HCD FTMS 0 0 0 12418 47594.4453125 0.739333836207302 1 -0.0295562744140625 3 Oxidation (M) _IYTDM(Oxidation (M))GRFTI_ ENSG00000105402|ENST00000263354|NAPA;ENSG00000125814|ENST00000377026|NAPB;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;nc|ENSG00000125814|Q9H115-2|NAPB 24.881564428377168 0.27837825820855233 1 YYV[WK]D[{M(Oxidation (M))|F}V]{I|L} 9 -1 + 36.589 0 0 2.9709 2.9709 82.799 0 0 0 11.539843494255003 6.746199743006052 6.746199743006052 8.507112333562866 0 0 1.3979400086720375 0.4247425010840047 0 YYV[WK]D[{M(Oxidation (M))|F}V]{I|L};YYV[KA]DDK[KC] 2.9709;2.2802 -;- 64 NaN NaN 112500.3 NaN 9577 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12422 56.914 NaN 221370 35 0 62041 0.263 -1 MMCPSPDL 8 51 491.6881385353849 981.3617241375698 2 491.68768310546875 MULTI HCD FTMS 0 0 0 12418 62738.40234375 0.5915443827221788 -2 0.055698394775390625 4 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))PSPDL_ ENST00000357877.6_1_2:74902100-74902307:+|nuORF 4.75600775471527 0.5349361699807423 1 VD{I|L} 3 -1 31.198 0 0 3.179 0 0 636.1733875959 0 636.1733875959 0 15.536049848239342 0 0 0 0.5 0 0 0 VD{I|L} 3.179 - 20 NaN NaN 114893.6 NaN 9578 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12423 56.918 NaN 248740 35 0 69242 0.261 + 26199 SPSEVTYEL 9 54 512.7453347342938 1023.4761165353876 2 512.7451782226562 MULTI HCD FTMS 0 0 0 12418 101830.90625 0.42344425359544186 -3 0.0851898193359375 5 Unmodified _SPSEVTYEL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 43.85829265575387 0.04763305254408404 1 EYE{I|L} 4 5 43.8 0 0 4.2795 0 0 471.23237807441564 0 471.23237807441564 0 22.602131414518922 0 0 0 0.8807196863200843 0 0.805462187404089 0 EYE{I|L} 4.2795 - 82 NaN NaN 117184.5 NaN 9579 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12424 56.921 NaN 176140 35 0 43156 0.262 + 21034 PLSKLHAN 8 43 440.25529396659647 878.496034999993 2 440.2554626464844 MULTI HCD FTMS 0 0 0 12418 24356.5625 0.29410191534527996 14 -0.3800544738769531 6 Unmodified _PLSKLHAN_ ENSG00000145623|ENST00000274276|OSMR 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.6624 0 0 713.4171450847571 0 713.4171450847571 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6624 - 36 + NaN NaN 108952.2 NaN 9580 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12425 56.924 NaN 92042 35 0 4511.8 0.261 -1 VYKAFVMETF 10 50 625.8099156559057 1249.6052783786113 2 626.3112182617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 13.90604991867851 0.3810395177745597 1 QKM 3 -1 11.682 0 0 0.93489 0 0 262.1633971303675 597.2348726861936 859.3982698165612 0 0 0 0 0 0 0 0 0 QKM 0.93489 - 20 + NaN NaN 98066.8 NaN 9581 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12426 56.928 NaN 199380 35 0 15167 0.263 + 14133 LADIEIHSI 9 59 505.779421252565 NaN 0 505.7799377441406 PEAK HCD FTMS 0 0 0 12418 28969.923828125 0.9320858560068652 1 -0.0295562744140625 8 Unmodified _LADIEIHSI_ ENSG00000067177|ENST00000373542|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;nc|ENSG00000067177|P46020-3|PHKA1 19.256988751693697 0.19238547928067054 1 Y 1 9 4.6041 0 0 0.45606 0 0 130.18730822602998 713.2723482721311 843.4596564981612 0 0 0 0 0 0 0 0 0 Y 0.45606 - 17 + NaN NaN 107101.7 NaN 9582 2842 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12428 56.933 NaN 4595000 35 0 1269900 0.327 + 31986 VYPLMKEYF 9 107 603.2993627880326 1204.584172642865 2 603.2999267578125 MULTI HCD FTMS 0 0 0 12427 2675752.25 0.7900466897049393 -1 0.0295562744140625 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 106.94017166704063 0.003441928997083001 1 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 97.137 0 0 8.0639 8.0639 88.577 0 0 0 4.106056125004827 4.106056125004827 4.106056125004827 4.106056125004827 0 3.004432191740108 2 0.9802046884880937 0 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}KYE{M(Oxidation (M))|F};[Y{I|L}]PV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[Y{I|L}]P[DP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P]Y[DP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F} 8.0639;7.723;7.4489;7.1267;6.3024;6.2655;6.1606;6.1449;6.1237;6.0824 +;+;-;-;-;-;-;-;-;- + 13918 + NaN NaN 783293.4 NaN 9583 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12429 56.937 NaN 2366800 35 0 369170 0.261 -1 DPRNATSVCI 10 118 566.7738872279571 1131.533221522714 2 566.7747802734375 MULTI HCD FTMS 0 0 0 12427 1196578.125 0.027895127625689128 29 -0.7957687377929688 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 1 P{M(Oxidation (M))|F}STSVSW 8 -1 91.381 0 0 8.0759 0 0 222.098969650965 0 222.098969650965 0 43.737125054200234 0 0 0 2.8494850021680094 0 1.829689690656103 0 P{M(Oxidation (M))|F}STSVSW 8.0759 - 10901 + NaN NaN 443572.3 NaN 9584 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12430 56.941 NaN 2952000 35 0 321170 0.261 + 25291 SAYEFYHAL 9 114 550.7560969661376 1099.4976409990752 2 550.7562866210938 MULTI HCD FTMS 0 0 0 12427 1363289.25 0.3136200826097409 -5 0.13761520385742188 3 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 133.70201269244603 0.0003804610509361063 1 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 87.406 0 0 7.9496 7.9496 88.276 0 0 0 3.8649072517248158 7.703489857067396 3.8649072517248158 3.8649072517248158 0 2.9247425010840047 0 1.7346368802282015 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}YHA{I|L};[YE]AS{M(Oxidation (M))|F}YHA{I|L};[YE]TG{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};SAYE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ES{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[YT]EG{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}T]DS{M(Oxidation (M))|F}YHA{I|L} 7.9496;7.5981;7.5101;7.4724;7.3203;7.249;6.43;6.1666;6.1145;5.7327 +;-;-;-;-;+;-;-;-;- + 3869 NaN NaN 532928.2 NaN 9585 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12431 56.944 NaN 893690 35 0 75689 0.261 + 24360 RYIFAKNLF 9 96 586.3348350537557 1170.6551171743113 2 586.3348388671875 MULTI HCD FTMS 0 0 0 12427 525336.8125 0.7033459896281141 3 -0.0852203369140625 4 Unmodified _RYIFAKNLF_ ENSG00000114956|ENST00000264093|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK 115.6920309560759 0.002013163348980568 1 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F} 10 5 + 106.48 0 0 9.096 9.096 92.408 0 0 0 25.26318867467667 74.98146441404636 25.26318867467667 9.164539485499262 0 1.0356668758921828 2 0.5994850021680094 2.1025684359364405 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KAHSKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HS]AKN{I|L}{M(Oxidation (M))|F};[Y{I|L}]R{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HS]AKGG{I|L}{M(Oxidation (M))|F};[YR]{I|L}{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F};[Y{I|L}]R{M(Oxidation (M))|F}AKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[Y{I|L}]KN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KA[PG]VVN{I|L}{M(Oxidation (M))|F};[YR]{I|L}{M(Oxidation (M))|F}AKGG{I|L}{M(Oxidation (M))|F} 9.096;8.3131;7.4262;6.8212;6.6433;6.3392;6.0347;5.9127;5.7842;5.5526 -;-;-;-;-;+;-;-;-;- + 3512 NaN NaN 216113.5 NaN 9586 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12432 56.947 NaN 1137200 35 0 305880 0.264 + 2822 DYLEKYYKF 9 77 423.54463972726137 1267.6120897819842 3 423.5447998046875 MULTI HCD FTMS 0 0 0 12427 452145.90625 0.7884247187293544 2 -0.05245208740234375 5 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 89.40071534611396 0.0045416704840156395 1 DY{I|L}EKYYK{M(Oxidation (M))|F} 9 0 + 102.78 0 0 8.1085 8.1085 95.611 0 0 0 88.17973589706955 12.909779419481936 12.909779419481936 31.63811573052314 0 1.6861818737241734 2 0.7742275032520141 0 + + DY{I|L}EKYYK{M(Oxidation (M))|F};DY{I|L}EKV[QA]A[MT];DY{I|L}EVK[QA]A[MT];{[QN]|[E{I|L}]|[KN]}YDVKE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[QN]|[E{I|L}]|[KN]}YDKVE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}[R{M(Oxidation (M))|F}]V[VP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[MT]{I|L}HHK[NP]YQ;[{I|L}T]MHHK[NP]YQ;{[QN]|[E{I|L}]|[KN]}[HS]DV[VP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[{I|L}T][HD]DV[VP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8.1085;5.6126;5.3303;4.6646;4.3823;2.6048;1.9462;1.6323;1.3766;0.46555 +;-;-;-;-;-;-;-;-;- + 649 + NaN NaN 258072.2 NaN 9587 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12433 56.951 NaN 1514300 35 0 138540 0.261 + 15804 LPHTDFTL 8 103 472.24781114897854 942.4810693647571 2 472.2478332519531 MULTI HCD FTMS 0 0 0 12427 500936.59375 0.17860518391397914 7 -0.17992019653320312 6 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 74.39630413441286 0.024620164976204544 1 [{I|L}P]H{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L} 8 0 + 44.115 0 0 4.6807 4.6807 81.904 0 0 0 8.142714304385613 14.406140654642812 8.142714304385613 2.3219692090591266 0 0.6307196863200843 2 0.6203715150305281 0 + + [{I|L}P]H{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L};[{I|L}P]H[{M(Oxidation (M))|F}T]DT{I|L};[YE][HA]P{I|L}T{I|L};[YE][{I|L}P][HA]T{I|L};[{I|L}P][YE][HA]T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};[YE][HA]PT{I|L}{I|L};[{I|L}P]{M(Oxidation (M))|F}QEV[NP];[YE][HA][{I|L}T]P{I|L};{I|L}TNT[KG]Y{M(Oxidation (M))|F} 4.6807;4.4343;3.8168;3.7036;3.7036;3.6727;3.2483;2.9736;2.5495;2.4931 +;-;-;-;-;-;-;-;-;- + 1655 NaN NaN 309310.1 NaN 9588 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12434 56.954 NaN 842780 35 0 79121 0.261 + 7939 GDTWQSVVSW 10 91 582.7692560816736 1163.523959230147 2 582.7698364257812 MULTI HCD FTMS 0 0 0 12427 412782.21875 0.04391406714439457 29 -0.7957687377929688 7 Unmodified _GDTWQSVVSW_ REV__ENSG00000171596|ENST00000305141|NMUR1 26.268140514670165 0.2654086933305545 1 SVS[YT]VSW 8 -1 67.484 0 0 5.8 0 0 236.0790362803628 0 236.0790362803628 0 49.02372200412145 0 0 0 2.7346368802282015 0 1.0752574989159953 0 SVS[YT]VSW 5.8 - 2462 + NaN NaN 205501.8 NaN 9589 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12435 56.957 NaN 527800 35 0 37766 0.261 + 30764 VPNNKEEDEL 10 86 593.7821483588662 1185.5497437845322 2 593.7822265625 MULTI HCD FTMS 0 0 0 12427 160011.4375 1 0 0 8 Unmodified _VPNNKEEDEL_ REV__ENSG00000137812|ENST00000399668|KNL1;REV__nc|ENSG00000137812|Q8NG31|KNL1 18.1463463914782 0.3413772152514074 1 {[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[WH]NVE{I|L} 9 -1 + 42.202 0 0 3.5597 3.5597 84.304 0 0 0 0.6593871989765887 20.65166884247503 0.6593871989765887 9.208187539523749 0 0.3807196863200844 0 0 0.7302046884880937 {[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[WH]NVE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[WH]GGVE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[WH]NEV{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}TY{I|L}[C(Carbamidomethyl (C))Q]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[WH]GGEV{I|L};[{I|L}V][YR]Y[NP]D{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[WH][WR]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[HD][WQ]V{I|L} 3.5597;2.783;2.4886;2.1233;1.7119;1.7048;1.1068;0.5364 -;-;-;-;-;-;-;- 347 NaN NaN 178103.7 NaN 9590 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12436 56.961 NaN 426180 35 0 20486 0.261 + 6325 FPFTREEAL 9 107 555.2843887240786 1108.554224514957 2 555.2835693359375 MULTI HCD FTMS 0 0 0 12427 113088.9765625 1 0 0 9 Unmodified _FPFTREEAL_ ENSG00000127481|ENST00000375254|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4 29.84058131909904 0.11198220037953927 1 [YN]D{[ET]|[MV]}[RK]A{I|L} 9 6 + 40.634 0 0 3.6655 3.6655 83.358 0 0 0 11.433896998905304 -1.9763724654451877 -1.9763724654451877 8.70172013200596 0 0.5941876774005249 2 0.6549471895720984 0.5501648626366046 [YN]D{[ET]|[MV]}[RK]A{I|L};[YN]A[VS]K[WE]{I|L};[YN]A[VS][QA]P{M(Oxidation (M))|F}{I|L};[YN]A[{I|L}A][PS]N{M(Oxidation (M))|F}{I|L};[Y{I|L}][TP]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}PE;[YN]A[{I|L}A][NS]P{M(Oxidation (M))|F}{I|L};[YN]A[VS]KQ[VS]N;[Y{I|L}]A{[QG]|[NA]}[PS]N{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}P{[DS]|[MA]|[CV]|TT}K[VS]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]A{[QG]|[NA]}[NS]P{M(Oxidation (M))|F}{I|L} 3.6655;2.8806;2.7881;2.696;2.5399;2.4451;2.3485;1.9464;1.8336;1.6955 -;-;-;-;-;-;-;-;-;- 1314 NaN NaN 160285.9 NaN 9591 2843 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12438 56.966 NaN 1064100 35 0 171540 0.327 + 13882 KYQEGLITL 9 95 532.8025864868974 1063.5906200405948 2 532.8031005859375 MULTI HCD FTMS 0 0 0 12437 432340.625 0.07337927324515182 10 -0.2652397155761719 1 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 110.5527297667825 0.0028521687250969148 1 [YK]QEG{I|L}{I|L}T{I|L} 9 0 + 83.963 0 0 7.8943 7.8943 88.499 0 0 0 3.65279269351241 38.48393800817397 3.65279269351241 4.607308385314923 0 2.2302046884880937 0 0.6747425010840047 0.9049471895720985 + + [YK]QEG{I|L}{I|L}T{I|L};{[HG]|PP}PQEG{I|L}{I|L}T{I|L};[YK][AG]EG{I|L}{I|L}T{I|L};{[HG]|PP}P[AG]EG{I|L}{I|L}T{I|L};[{I|L}T]{I|L}G{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}DK;[{I|L}T]KD[{M(Oxidation (M))|F}V]VDK;[{I|L}T]{I|L}G{I|L}E[YQ]K;[KT]{I|L}D[{M(Oxidation (M))|F}V]VDK;[TA][{I|L}V]{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}DK 7.8943;7.4611;7.0285;5.7486;3.6259;3.0475;2.5427;1.1138;0.526 +;-;-;-;-;-;-;-;- + 2503 NaN NaN 252930 NaN 9592 2844 12437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12439 56.97 NaN 1082500 35 0 89429 0.261 + 22795 QYLELAHSL 9 94 537.2848158220404 1072.5550787108807 2 537.2850952148438 MULTI HCD FTMS 0 0 0 12437 330770.6875 0.6562727761361307 -1 0.032886505126953125 2 Unmodified _QYLELAHSL_ ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL 131.26759243768294 0.0005280990274065272 1 [YQ]{I|L}E{I|L}AH{[TV]|[{I|L}S]} 9 0 + 67.207 0 0 6.266 6.266 92.338 0 0 0 34.1491527745719 15.871280189675971 15.871280189675971 31.013422047481633 0 1.1465912507003613 1 1.7658715643802765 0 + + [YQ]{I|L}E{I|L}AH{[TV]|[{I|L}S]};[YQ]{I|L}E{I|L}[HS][{I|L}A];{[MS]|[{M(Oxidation (M))|F}A]}[VS]E{I|L}AH{[TV]|[{I|L}S]};[QA][VG]A{I|L}E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[QA][VG]A{I|L}EW{[TV]|[{I|L}S]};{[QN]|[E{I|L}]|[KN]}{I|L}[YQ]AH{[TV]|[{I|L}S]};[NS][KP]{I|L}E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E{I|L}A[Q{I|L}]N;[NS][KP]{I|L}EW{[TV]|[{I|L}S]};{[QN]|[E{I|L}]|[KN]}{I|L}[PS]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 6.266;3.3745;3.2741;2.8406;2.5534;2.4569;2.4036;2.18;2.1164;1.8024 +;-;-;-;-;-;-;-;-;- + 1393 + NaN NaN 246833.6 NaN 9593 2844 12437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12440 56.974 NaN 354600 35 0 42986 0.261 + 13973 KYSEVFEAI 9 74 543.2794553217416 1084.544357710283 2 543.279541015625 MULTI HCD FTMS 0 0 0 12437 204424.65625 0.19781149647902443 7 -0.17992782592773438 3 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 28.494509381512117 0.11816142465008336 1 V{M(Oxidation (M))|F}EA{I|L} 5 4 54.949 0 0 5.0665 0 0 507.23359877754064 0 507.23359877754064 0 33.979400086720375 0 0 0 1.8494850021680094 0 0 0 + V{M(Oxidation (M))|F}EA{I|L} 5.0665 + + 492 NaN NaN 136627.9 NaN 9594 2844 12437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12441 56.977 NaN 762880 35 0 60985 0.261 + 34687 YPVDLGDKF 9 89 527.2662717961327 1052.5179906590654 2 527.2664184570312 MULTI HCD FTMS 0 0 0 12437 310531.0625 0.24219704365876718 -7 0.20298004150390625 4 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 107.09958533191995 0.0034159042678574016 1 YPVD{I|L}GDK{M(Oxidation (M))|F} 9 0 + 120.44 0 0 11.443 11.443 95.884 0 0 0 87.97341391239765 16.478174818886373 16.478174818886373 12.206225184280797 0 3.1549471895720984 1.6989700043360187 1.4559771852360797 0 + + YPVD{I|L}GDK{M(Oxidation (M))|F};YPVD{I|L}G[VG]S{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}GDK{M(Oxidation (M))|F};[VP]YD{I|L}GDK{M(Oxidation (M))|F};[VP]PDG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}G{[QV]|[N{I|L}]|[RA]|[KV]}Y;[VP]DPG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};[VP]DY{I|L}GDK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[EP]T{I|L}GDK{M(Oxidation (M))|F};[VP]D{I|L}YGDK{M(Oxidation (M))|F} 11.443;10.284;8.5378;6.8701;6.3879;6.3279;5.9843;5.823;5.5093;4.6839 +;-;+;-;-;-;-;-;-;- + 1169 + NaN NaN 201712.8 NaN 9595 2844 12437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12442 56.98 NaN 348400 35 0 32464 0.261 + 21610 PYPFTHHWQF 10 74 453.88038074765984 1358.6193128431796 3 453.8812255859375 MULTI HCD FTMS 0 0 0 12437 105347.3515625 0.36938458205744235 -6 0.170501708984375 5 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 19.625955294349634 0.3275374527965692 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 3 7 27.676 0 0 2.0371 0 0 0 967.4280341168702 967.4280341168702 -0.5115252244738144 0 -0.5115252244738144 0 0 0.5 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 2.0371 - 194 NaN NaN 140455.1 NaN 9596 2844 12437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12444 56.985 NaN 5881800 35 0 1179100 0.327 + 8416 GYSEHFVEF 9 106 557.7455165912979 1113.4764802493958 2 557.745849609375 MULTI HCD FTMS 0 0 0 12443 4682270.5 1 0 0 1 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 156.15588289589118 2.3186882095317417E-06 1 [YG]DTH{M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 9 2 + 85.072 0 0 7.6402 7.6402 92.408 0 0 0 7.600133174714472 43.47775146035433 7.600133174714472 12.028937514676485 0 2.8979400086720375 1.5228787452803376 1.1989700043360187 0 [YG]DTH{M(Oxidation (M))|F}VE{M(Oxidation (M))|F};[YG]DTH{M(Oxidation (M))|F}V{M(Oxidation (M))|F}E;[YG]DTH{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};[YG]DTHEV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]DTHE{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][HS][YG]VE{M(Oxidation (M))|F};[YG]DE[HT]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HT]G{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}VE{M(Oxidation (M))|F};[YG]DE[HT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}TD[YG]VE{M(Oxidation (M))|F} 7.6402;6.5599;6.4104;5.5278;5.1068;4.7478;4.6143;4.604;4.1933;3.9087 -;-;-;-;-;-;-;-;-;- 4872 NaN NaN 710018.8 NaN 9597 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12445 56.99 NaN 1897500 35 0 270410 0.261 + 19453 NPSVREFVL 9 105 530.7929472343349 1059.5713415354696 2 530.7931518554688 MULTI HCD FTMS 0 0 0 12443 923788.5 0.03530426286510156 17 -0.46518707275390625 2 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 143.90916361153978 1.5265063399744E-05 1 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 100.06 0 0 9.4436 9.4436 97.118 0 0 0 24.722798970277907 68.12343157950488 24.722798970277907 27.366953314674134 0 2.1747425010840047 1.2218487496163564 0.9698565171985375 2.278659694992122 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};{[NV]|[RG]}[PS]RE{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[PS][VG]E{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[SG][VP]E{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NV{I|L};{[NV]|[RG]}[PS]RV[{M(Oxidation (M))|F}E]{I|L};N[RH]V[WH]V{I|L};[QT][PA]RE{M(Oxidation (M))|F}V{I|L} 9.4436;6.8608;5.9593;5.2924;4.4234;3.969;2.7578;1.8082;1.6188;1.5684 +;+;-;-;-;-;-;-;-;- + 1210 NaN NaN 369297.6 NaN 9598 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12446 56.993 NaN 1030400 35 0 125250 0.261 + 4459 EYIKFLRSI 9 95 584.8402629298181 1167.665972926436 2 584.8405151367188 MULTI HCD FTMS 0 0 0 12443 313986.3125 0.8275782372688201 1 -0.03276824951171875 3 Unmodified _EYIKFLRSI_ ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2 100.7086487251713 0.004245359191255521 1 EY{I|L}K{M(Oxidation (M))|F}{I|L}RS{I|L} 9 0 + 89.452 0 0 7.6608 7.6608 92.451 0 0 0 60.8139954678868 12.649291341558552 12.649291341558552 12.085521743960328 0 1.9291746928241125 1.6989700043360187 0.5501648626366046 0.3054621874040891 + + EY{I|L}K{M(Oxidation (M))|F}{I|L}RS{I|L};EY{I|L}K{I|L}{M(Oxidation (M))|F}RS{I|L};{I|L}[YE]K{M(Oxidation (M))|F}{I|L}RS{I|L};{I|L}[YE]K{I|L}{M(Oxidation (M))|F}RS{I|L};[K{I|L}]{M(Oxidation (M))|F}YE{I|L}RS{I|L};[HV]R[C(Carbamidomethyl (C))K]{I|L}RS{I|L};[HV]R{I|L}[C(Carbamidomethyl (C))K]RS{I|L};[HV][VG]{I|L}{M(Oxidation (M))|F}[VG]{I|L}D{I|L} 7.6608;6.6257;4.5169;3.4819;2.7822;1.7916;1.5983;0.020407 +;-;-;-;-;-;-;- + 657 + NaN NaN 245841.6 NaN 9599 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12447 56.996 NaN 697260 35 0 53212 0.261 -1 IETHGMAVSW 10 107 573.7657539071055 1145.5169548810109 2 573.7643432617188 MULTI HCD FTMS 0 0 0 12443 197478.359375 0.02878937743255896 31 -0.8582344055175781 4 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 36.12702656103203 0.1790159924230938 1 HSVSTYVSW 9 -1 75.184 0 0 6.5633 0 0 81.03838971403577 0 81.03838971403577 0 40.09779155835949 0 0 0 2.474907363720609 0 1.2544321917401078 0 HSVSTYVSW 6.5633 - 3506 + NaN NaN 193639.2 NaN 9600 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12448 57 NaN 764570 35 0 127350 0.261 + 5699 FPAGYMYPSM 10 95 598.2433088441734 1194.4720647551467 2 598.243896484375 MULTI HCD FTMS 0 0 0 12443 274022.75 0.7463792164945645 -31 0.8380966186523438 5 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 1 [YT]DR{M(Oxidation (M))|F}YPST 9 6 67.423 0 0 5.6446 0 0 0 60.97836565636059 60.97836565636059 45.027515650137104 0 0 0 0 1.805462187404089 1.6989700043360187 1.110924374808178 0 [YT]DR{M(Oxidation (M))|F}YPST 5.6446 - 1190 NaN NaN 199586.3 NaN 9601 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12449 57.003 NaN 524260 35 0 55777 0.262 + 22615 QVAVDEPDL 9 76 493.2455666719803 984.4765804107607 2 493.7583312988281 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QVAVDEPDL_ REV__ENSG00000152818|ENST00000367545|UTRN;REV__nc|ENSG00000152818|P46939-2|UTRN 13.042465956692817 0.2476723265019929 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}H]|[RQ]}SAPA 8 -1 38.14 0 0 3.8741 0 0 0 127.04669037553039 127.04669037553039 26.790521660407123 0 0 0 0 0 1.2218487496163564 1.1307196863200843 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}H]|[RQ]}SAPA 3.8741 - 265 NaN NaN 155584.5 NaN 9602 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12450 57.006 NaN 297330 35 0 28660 0.261 + 16084 LPSSFVEKL 9 76 510.2922699194232 1018.5699869056464 2 510.29229736328125 MULTI HCD FTMS 0 0 0 12443 103493.75 0.14353197705915383 6 -0.16036224365234375 7 Unmodified _LPSSFVEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 37.07464296494664 0.07877380486334713 1 {I|L}PSS{M(Oxidation (M))|F}V 6 3 59.646 0 0 5.8559 0 0 0 385.2098482721313 385.2098482721313 41.57435363544131 0 0 0 0 0.8494850021680094 1.3979400086720375 0.7302046884880937 0 + {I|L}PSS{M(Oxidation (M))|F}V 5.8559 + + 178 + NaN NaN 132394.8 NaN 9603 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12451 57.01 NaN 218940 35 0 9787.2 0.261 + 33055 YDELLKIDEE 10 67 633.8069866554331 1265.599420377666 2 634.8140869140625 MULTI HCD FTMS 0 0 0 12443 127945.3125 0.47771748528255603 6 -0.16036224365234375 8 Unmodified _YDELLKIDEE_ REV__tr|U7SP34|U7SP34_FUSNUCorrinoidadenosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01712PE=3SV=1 8.155526934196011 0.43213520406898465 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EVKE{I|L}EE 10 -1 + 53.365 0 0 4.2166 4.2166 82.935 0 0 0 10.974184576165342 -3.4678748622465605 -3.4678748622465605 6.154239528859442 0 0 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EVKE{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EVKE[DG][KA];YKYKYE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YKYKY{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}E]{I|L}EKV{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};Y[EP]EKV{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QD]|[EN]|[WG]|[KD]|[RS]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KVE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}VKE{I|L}EE;[{M(Oxidation (M))|F}E]{I|L}EKY[HT]{[TV]|[{I|L}S]};[MT][C(Carbamidomethyl (C))K]VKE{I|L}EE 4.2166;3.7303;2.9068;1.524;1.2534;1.2534;1.1547;1.0782;1.0156;0.9627 -;-;-;-;-;-;-;-;-;- 266 NaN NaN 108554 NaN 9604 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12452 57.013 NaN 286820 35 0 17852 0.261 + 17840 MHSSIEAVSSM 11 68 589.7601057528578 1177.5056585725156 2 589.7595825195312 MULTI HCD FTMS 0 0 0 12443 129590.0859375 0.05227545663593602 31 -0.8582344055175781 9 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 21.536976647645854 0.2694300281126922 1 VS{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 24.253 0 0 2.0597 0 0 755.3224964826187 0 755.3224964826187 0 -1.9453781259591096 -1.9453781259591096 0 0 0.805462187404089 0 0 0 VS{[MS]|[{M(Oxidation (M))|F}A]} 2.0597 + + 54 NaN NaN 129120.9 NaN 9605 2845 12443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12454 57.018 NaN 893540 35 0 107870 0.327 + 12693 KWNPTAGVAF 10 105 545.7880506340998 1089.5615483349995 2 545.7881469726562 MULTI HCD FTMS 0 0 0 12453 405545.875 0.6809833302845775 3 -0.06185150146484375 1 Unmodified _KWNPTAGVAF_ ENSG00000102978|ENST00000219252|POLR2C;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF 86.33184430468982 0.0012839548613462067 1 [WK]NPQTVA{M(Oxidation (M))|F} 9 3 + 71.693 0 0 6.58 6.58 85.222 0 0 0 8.89506772603255 56.91122510072759 8.89506772603255 2.390690719683093 0 2.1747425010840047 0 0.2614393726401688 1.1747425010840047 [WK]NPQTVA{M(Oxidation (M))|F};[WK]NP[TA]GVA{M(Oxidation (M))|F};[WK]NP[AG]TVA{M(Oxidation (M))|F};[WK]GGPQTVA{M(Oxidation (M))|F};[WK]GGP[TA]GVA{M(Oxidation (M))|F};[WK]NP{[CP]|[EA]}KA{M(Oxidation (M))|F};[WK]GGP[AG]TVA{M(Oxidation (M))|F};[WK]GGP{[CP]|[EA]}KA{M(Oxidation (M))|F};[WK]NPQA{[TV]|[{I|L}S]}{M(Oxidation (M))|F};[HV]VG{[QV]|[N{I|L}]|[RA]|[KV]}{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F} 6.58;6.3605;5.7348;5.7348;5.5194;5.1131;4.8937;4.2679;3.7727;3.2617 -;+;-;-;-;-;-;-;-;- + 1586 NaN NaN 224971 NaN 9606 2846 12453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12455 57.022 NaN 640890 35 0 125340 0.261 + 25085 SADPNVVDL 9 83 465.23216417700655 928.4497754208131 2 465.2322082519531 MULTI HCD FTMS 0 0 0 12453 202754.078125 0.55123455620606 2 -0.035640716552734375 2 Unmodified _SADPNVVDL_ ENSG00000181938|ENST00000318129|GINS3;ENST00000567143.1_1_16:58436992-58437325:+|nuORF;nc|ENSG00000181938|Q9BRX5-3|GINS3 40.23920728925047 0.06424668180817725 1 VVD{I|L} 4 5 40.037 0 0 4.3123 0 0 484.19383437324376 0 484.19383437324376 0 19.746687923431097 0 0 0 1.2614393726401687 0 0 0 + VVD{I|L} 4.3123 + + 344 NaN NaN 192813.5 NaN 9607 2846 12453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12456 57.026 NaN 336470 35 0 35651 0.261 + 13375 KYNDTFWKEF 10 65 459.88726742564097 1376.639972877123 3 459.88751220703125 MULTI HCD FTMS 0 0 0 12453 72686.4140625 0.3408129536059604 2 -0.035640716552734375 3 Unmodified _KYNDTFWKEF_ ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P 21.2413784809298 0.3124273293558954 1 W{M(Oxidation (M))|F}T[C(Carbamidomethyl (C))Q][{I|L}T] 7 9 33.957 0 0 2.4667 0 0 422.2205278431856 0 422.2205278431856 0 14.493106925747412 0 0 0 1.5 0 0.7742275032520141 0 W{M(Oxidation (M))|F}T[C(Carbamidomethyl (C))Q][{I|L}T] 2.4667 - 127 + NaN NaN 134428.4 NaN 9608 2846 12453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12457 57.029 NaN 340300 35 0 27885 0.261 + 18254 MPDVDLHL 8 77 478.2313836346678 954.4482143361356 2 478.2311096191406 MULTI HCD FTMS 0 0 0 12453 119007.90625 0.10159826829146222 34 -0.9336357116699219 4 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 97.07464715276575 0.03528778528112001 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 65.916 0 0 6.9061 6.9061 87.91 0 0 0 7.105319037595876 7.105319037595876 7.105319037595876 7.105319037595876 0 2.305462187404089 0 1.579689690656103 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{I|L}DH{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{M(Oxidation (M))|F}PDV{I|L}HD{I|L};{[ET]|[MV]}{[ET]|[MV]}[EP]H{I|L} 6.9061;6.1617;5.0518;3.414;3.077;1.0681 +;+;-;-;-;- + 246 NaN NaN 137458.2 NaN 9609 2846 12453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12458 57.032 NaN 636720 35 0 53117 0.261 + 35453 YYEYNHDLF 9 86 632.2696861215486 1262.524819309897 2 632.2695922851562 MULTI HCD FTMS 0 0 0 12453 242262.328125 0.3418061179652566 -5 0.14760208129882812 5 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 51.629811660486645 0.02929079705179888 1 YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F} 10 6 + 45.367 0 0 3.5933 3.5933 80.1 0 0 0 4.376983880656056 -1.5882570711737287 -1.5882570711737287 1.3608439742522762 0 0.5 2 0.2742275032520141 0 YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYEW{NN|[MP]|[D{I|L}]|[EV]}D{I|L}{M(Oxidation (M))|F};YYHTY{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F};[YN]WTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYYTH{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYYTH{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]WTY{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]A{[ES]|[DT]|[{I|L}C]}YW{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YE]YW{NN|[MP]|[D{I|L}]|[EV]}D{I|L}{M(Oxidation (M))|F} 3.5933;3.4856;3.3761;3.1662;3.1662;3.0397;2.8225;2.7203;2.7203;0.95177 -;-;-;-;-;-;-;-;-;- 1684 NaN NaN 184320.3 NaN 9610 2846 12453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12459 57.036 NaN 244900 35 0 15458 0.261 + 34284 YPDRIMNTF 9 88 578.7764311978499 1155.5383094624997 2 578.7764282226562 MULTI HCD FTMS 0 0 0 12453 70321.984375 0.0263551303730746 59 -1.5668754577636719 6 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 38.61474834105838 0.07170385841135779 1 MNT{M(Oxidation (M))|F} 4 5 47.423 0 0 4.104 0 0 644.329393455275 0 644.329393455275 0 16.576447055154517 0 0 0 1.274227503252014 0 0 0.4247425010840047 + MNT{M(Oxidation (M))|F} 4.104 + + 220 NaN NaN 126386.3 NaN 9611 2846 12453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12461 57.041 NaN 1725200 35 0 344160 0.327 + 22719 QYDEAVAQF 9 104 535.743097628998 1069.471642324796 2 535.7432861328125 MULTI HCD FTMS 0 0 0 12460 753804.8125 0.7805897748880654 -2 0.055561065673828125 1 Unmodified _QYDEAVAQF_ ENSG00000132780|ENST00000350030|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-4|NASP 99.75527289724121 0.004270341300239591 1 [{M(Oxidation (M))|F}E]A{[ET]|[MV]}QAQ{M(Oxidation (M))|F} 9 5 + 59.42 0 0 5.556 5.556 87.196 0 0 0 4.137342758552691 45.440768638342774 4.137342758552691 9.208187539523749 0 1.3494850021680094 0 1.1989700043360187 0.7614393726401688 [{M(Oxidation (M))|F}E]A{[ET]|[MV]}QAQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{[ET]|[MV]}QA[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{[ET]|[MV]}[AG]AQ{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}Y{[CP]|[EA]}VAK{M(Oxidation (M))|F} 5.556;4.695;3.983;3.4838 -;-;-;- 959 NaN NaN 348061.1 NaN 9612 2847 12460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12462 57.045 NaN 252610 35 0 25602 0.261 + 14006 KYTEITATYF 10 56 618.8112397571922 1235.6079265811843 2 618.8107299804688 MULTI HCD FTMS 0 0 0 12460 120318.6796875 0.878303649335318 -2 0.055561065673828125 2 Unmodified _KYTEITATYF_ ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL 37.07464296494664 0.1707926854601146 1 [YT][TA]VVTATY{M(Oxidation (M))|F} 11 4 + 91.987 0 0 7.4447 7.4447 94.656 0 0 0 22.926519000409414 79.42403881706778 22.926519000409414 32.1438826455356 0 1.8494850021680094 1.6989700043360187 1.2302046884880937 0 [YT][TA]VVTATY{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{I|L}TATY{M(Oxidation (M))|F};[NS]{NN|[MP]|[D{I|L}]|[EV]}ATVV[TA][{M(Oxidation (M))|F}V];[YK]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]}Y{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}Y{M(Oxidation (M))|F};[YK]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[YC(Carbamidomethyl (C))]{I|L}{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{I|L}[YC(Carbamidomethyl (C))]{I|L}{M(Oxidation (M))|F} 7.4447;4.8432;2.5787;2.5773;2.2922;1.2632;0.97815 -;+;-;-;-;-;- + 256 NaN NaN 122343.4 NaN 9613 2847 12460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12463 57.049 NaN 259550 35 0 23324 0.262 + 16085 LPSSFVEKL 9 79 510.2922699194232 1018.5699869056464 2 510.29052734375 MULTI HCD FTMS 0 0 0 12460 87979.6953125 0.12201605999652243 8 -0.21302413940429688 3 Unmodified _LPSSFVEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 38.61474834105838 0.07170385841135779 1 {I|L}PSS{M(Oxidation (M))|F}VEK{I|L} 9 0 + 49.708 0 0 4.8802 4.8802 90.839 0 0 0 24.971383716716815 0.06675312145340229 0.06675312145340229 49.70799094281837 0 1.3667053245199625 1.3979400086720375 0.6989700043360187 0 + + {I|L}PSS{M(Oxidation (M))|F}VEK{I|L} 4.8802 + + 249 + NaN NaN 122941.9 NaN 9614 2847 12460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12465 57.054 NaN 4331700 35 0 1298800 0.327 + 31987 VYPLMKEYF 9 95 603.2993627880326 1204.584172642865 2 603.299560546875 MULTI HCD FTMS 0 0 0 12464 2675935 0.7901006487486226 4 -0.12481689453125 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 85.64151623876279 0.004640175941193596 1 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 86.961 0 0 7.2191 7.2191 86.336 0 0 0 16.11887214954777 16.478174818886373 16.11887214954777 2.2184874961635614 0 1.805462187404089 2 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYEVY{M(Oxidation (M))|F};[YV]P{I|L}[CS][{I|L}T]Y{M(Oxidation (M))|F};[YV]TG{M(Oxidation (M))|F}[{I|L}P]VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEVYY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYVEY{M(Oxidation (M))|F} 7.2191;7.035;5.881;5.7261;5.6637;5.5755;5.4784;5.3026;5.1794;4.9953 +;-;-;-;-;-;-;-;-;- + 2683 NaN NaN 613331.8 NaN 9615 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12466 57.058 NaN 3408300 35 0 257570 0.261 + 4974 FAVLEDHTL 9 108 522.7715175948975 1043.528482256595 2 522.7716064453125 MULTI HCD FTMS 0 0 0 12464 1798557.875 1 0 0 2 Unmodified _FAVLEDHTL_ CCDC50|p.A43Hfs*25|1|0.22|ENSG00000152492|chr3:191358011-191358011|G/-|frameshift_variant;CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant;ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50 107.99703571036002 0.003269392969029945 1 {M(Oxidation (M))|F}AV{I|L}EDH[{I|L}T] 9 0 + 69.571 0 0 6.6669 6.6669 91.609 0 0 0 11.443148794456775 1.4484373397633306 1.4484373397633306 15.933825909009187 0 2.4049471895720984 0 1.3807196863200843 0 + + {M(Oxidation (M))|F}AV{I|L}EDH[{I|L}T];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]{[SA]|[TG]}{I|L}VAE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[TP][NG]{I|L}VAE;{[MS]|[{M(Oxidation (M))|F}A]}V{I|L}EDH[{I|L}T];[Q{I|L}]QDE{I|L}[W{I|L}];{[MS]|[{M(Oxidation (M))|F}A]}VAPASP[VG]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]{[VA]|[{I|L}G]}TVAE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PS]{[QG]|[NA]}VAE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VP]{[QG]|[NA]}TVAE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}QASP[VG]E 6.6669;5.1399;4.8877;4.4129;4.0419;3.8188;3.7158;3.6261;3.5032;3.4941 +;-;-;+;-;-;-;-;-;- + 4871 + NaN NaN 606560.1 NaN 9616 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12467 57.062 NaN 248940 35 0 68877 0.261 + 26200 SPSEVTYEL 9 52 512.7453347342938 1023.4761165353876 2 512.7454223632812 MULTI HCD FTMS 0 0 0 12464 185882.734375 0.7729576276230151 3 -0.09195327758789062 3 Unmodified _SPSEVTYEL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 52.268347100219714 0.028397529699942435 1 {[QN]|[E{I|L}]|[KN]}[QT]EYE{I|L} 8 5 + 50.495 0 0 4.9336 4.9336 86.987 0 0 0 0.45757490560674796 23.618347374219102 0.45757490560674796 9.542425094393252 0 0.8807196863200843 0 1.2302046884880937 0 {[QN]|[E{I|L}]|[KN]}[QT]EYE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{NN|[MP]|[D{I|L}]|[EV]}EYE{I|L} 4.9336;4.0013 -;- 119 NaN NaN 119841.7 NaN 9617 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12468 57.065 NaN 99820 35 0 9337.3 0.261 + 10120 IFKPPDPDNTF 11 40 645.821860797683 1289.629168662166 2 645.8211059570312 MULTI HCD FTMS 0 0 0 12464 53026.96484375 0.9231389369049239 1 -0.026210784912109375 4 Unmodified _IFKPPDPDNTF_ ENSG00000165943|ENST00000298894|MOAP1 12.872603262515298 0.344922997490724 1 K{[QN]|[E{I|L}]|[KN]} 3 9 18.952 0 0 1.4696 0 0 901.3817651466455 0 901.3817651466455 0 18.952424927286845 0 0 0 0.8494850021680094 0 0 0 K{[QN]|[E{I|L}]|[KN]} 1.4696 - 13 NaN NaN 96607.8 NaN 9618 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12469 57.068 NaN 428170 35 0 81570 0.263 + -1 SAPGCFPYL 9 69 506.23375482749594 1010.4529567217919 2 506.2344665527344 MULTI HCD FTMS 0 0 0 12464 45582.0078125 0.08165829588810905 -15 0.3922462463378906 5 Carbamidomethyl (C) _SAPGC(Carbamidomethyl (C))FPYL_ REV__ENST00000528092.5_1_11:36654860-36669653:+|nuORF 7.910154910731844 0.2910521888787154 1 Y{I|L} 2 -1 22.959 0 0 2.2721 0 0 716.2953279450358 0 716.2953279450358 0 13.037275116073348 0 0 0 0.5 0 0 0 Y{I|L} 2.2721 + + 103 NaN NaN 151007.2 NaN 9619 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12470 57.072 NaN 96584 35 0 7952.5 0.261 + 8898 HPDASVNFSEF 11 44 625.278112942694 1248.5416729521878 2 625.2784423828125 MULTI HCD FTMS 0 0 0 12464 24041.564453125 0.5184966257840561 1 -0.026210784912109375 6 Unmodified _HPDASVNFSEF_ ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF 6.630372943996041 0.3898421031449734 1 SE{M(Oxidation (M))|F} 3 8 30.445 0 0 2.4385 0 0 867.3871374598411 0 867.3871374598411 0 26.46591250700361 0 0 0 0 0 0.4247425010840047 0 + SE{M(Oxidation (M))|F} 2.4385 + + 9 NaN NaN 97286.2 NaN 9620 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12471 57.075 NaN 67585 35 0 5461.5 0.264 -1 CVEKWCRDYF 10 41 469.205078125 NaN 0 469.205078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))VEKWCRDYF_ ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 2.0860074813731053 0.33839895573887124 1 H 1 -1 0.3786 0 0 0.040432 0 0 377.1087951154313 419.1930330865844 796.3018282020157 0 0 0 0 0 0 0 0 0 H 0.040432 - 1 + NaN NaN 100014 NaN 9621 2848 12464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12473 57.08 NaN 5546900 35 0 697670 0.327 + 25292 SAYEFYHAL 9 102 550.7560969661376 1099.4976409990752 2 550.7564086914062 MULTI HCD FTMS 0 0 0 12472 3745833.5 0.8617163318146422 1 -0.032848358154296875 1 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 147.8311659463005 1.1118996804784084E-05 1 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 92.749 0 0 8.4356 8.4356 87.734 0 0 0 1.020599913279625 7.605742396127923 1.020599913279625 1.020599913279625 0 3 0 2.193672679568534 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}YHA{I|L};[YE]AS{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};SAYE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ES{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}T]DS{M(Oxidation (M))|F}YHA{I|L};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SYYYSA{I|L} 8.4356;8.3427;8.3139;8.008;7.7438;7.2907;6.7686;6.434;6.2931;3.7203 +;-;-;-;+;-;-;-;-;- + 3463 NaN NaN 638138.1 NaN 9622 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12474 57.084 NaN 2033200 35 0 324500 0.261 -1 DPRNATSVCI 10 119 566.7738872279571 1131.533221522714 2 566.774658203125 MULTI HCD FTMS 0 0 0 12472 997333.8125 0.0232502612272831 35 -0.9865760803222656 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 1 SP{M(Oxidation (M))|F}STSVSW 9 -1 84.453 0 0 7.4636 0 0 135.0877621245516 0 135.0877621245516 0 61.77108148272637 0 0 0 2.8494850021680094 0 1.7416440611282624 0 SP{M(Oxidation (M))|F}STSVSW 7.4636 - 9273 + NaN NaN 391534.9 NaN 9623 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12475 57.088 NaN 1019500 35 0 85778 0.261 + 1138 AYLEAIHNF 9 90 539.2717127924562 1076.5288726517124 2 539.2720947265625 MULTI HCD FTMS 0 0 0 12472 356418.03125 0.215662013034064 -4 0.0946197509765625 3 Unmodified _AYLEAIHNF_ ENSG00000042753|ENST00000263270|AP2S1 110.6747026088012 0.0028322563155251486 1 AY{I|L}EA{I|L}HN{M(Oxidation (M))|F} 9 0 + 105.3 0 0 9.7815 9.7815 89.652 0 0 0 91.70941280735774 14.09256854528806 14.09256854528806 1.8483311575249672 0 3.1989700043360187 2 0.4247425010840047 0.5752574989159953 + + AY{I|L}EA{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HGG{M(Oxidation (M))|F};AY{I|L}[DV]VHN{M(Oxidation (M))|F};AY{I|L}EA{I|L}HGG{M(Oxidation (M))|F};[Y{I|L}]AEA{I|L}HN{M(Oxidation (M))|F};AY{I|L}[DV]VHGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}{[QG]|[NA]}{[NV]|[RG]};[Y{I|L}]AEA{I|L}HGG{M(Oxidation (M))|F};AY{[CP]|[EA]}{I|L}{I|L}HN{M(Oxidation (M))|F} 9.7815;9.6098;8.7544;8.5083;8.3918;7.3651;7.1186;6.585;6.5098;6.4366 +;+;-;-;-;-;-;-;-;- + 1704 + NaN NaN 234734.4 NaN 9624 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12476 57.091 NaN 144840 35 0 20526 0.262 -1 0 55 451.19375468563106 450.1864782190311 1 451.19384765625 MULTI HCD FTMS 0 0 0 12472 109711.7265625 0.7255912857335508 6 -0.1739654541015625 4 NaN NaN 1 {I|L} 1 -1 12.764 0 0 2.8353 0 0 319.0916428692248 0 319.0916428692248 0 0.2899597348884342 0 0 0 0 0 0 0 {I|L} 2.8353 - 11 + NaN NaN 100775.7 NaN 9625 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12477 57.094 NaN 168360 35 0 27559 0.261 + 1038 AYGHFSYEF 9 57 560.7409098772953 1119.4672668213905 2 560.7404174804688 MULTI HCD FTMS 0 0 0 12472 74695.859375 0.037817820838647806 29 -0.8160171508789062 5 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 42.09456458481378 0.05572955244001856 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT][QA]YE{M(Oxidation (M))|F} 9 4 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT][QA]Y + + 34.464 -2.708 -0.32811 3.0786 3.0786 59.32 0 0 0 0 27.501225267834002 0 0 0 1 0 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT][QA]YE{M(Oxidation (M))|F} 3.0786 - 52 + NaN NaN 111804 NaN 9626 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12478 57.098 NaN 478250 35 0 115170 0.261 + 8457 HAAPFQNIL 9 70 505.774569814789 1009.534586696378 2 505.77435302734375 MULTI HCD FTMS 0 0 0 12472 78001.9453125 0.707463489906036 -1 0.026210784912109375 6 Unmodified _HAAPFQNIL_ CYFIP1|p.R1034Q|1|0.45|ENSG00000273749|chr15:22875213-22875213|C/T|missense_variant;ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;ENST00000522892.1_1_5:156788429-156810457:+|nuORF;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1 10.823927491677226 0.26684000660059787 1 N{I|L}{I|L} 3 6 26.242 0 0 2.5994 0 0 651.3127308576187 0 651.3127308576187 0 12.26280941356464 0 0 0 0 0 0 0.3054621874040891 + N{I|L}{I|L} 2.5994 + + 37 NaN NaN 154837.6 NaN 9627 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12479 57.101 NaN 86109 35 0 4777.8 0.261 + -1 YNFFLECHM 9 52 638.7584864105518 1275.5024198879034 2 639.7617797851562 MULTI HCD FTMS 0 0 0 12472 21032.654296875 0.5077613745005005 1 -0.032848358154296875 7 Carbamidomethyl (C),Oxidation (M) _YNFFLEC(Carbamidomethyl (C))HM(Oxidation (M))_ REV__PTH2R|p.S403Y|1|0.5|ENSG00000144407|chr2:208489143-208489143|C/A|missense_variant 4.3292370932331545 0.3181982124262546 1 C(Carbamidomethyl (C))D 2 -1 16.198 0 0 1.2699 0 0 0 997.3826998346311 997.3826998346311 5.263392773898444 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C))D 1.2699 - 92 + NaN NaN 93357.5 NaN 9628 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12480 57.104 NaN 111260 35 0 15212 0.264 + 27873 TDVTKYRLEW 10 43 437.5626109832001 1309.6660035498003 3 437.5633239746094 MULTI HCD FTMS 0 0 0 12472 5834.7236328125 0.05432130214084276 8 -0.23292160034179688 8 Unmodified _TDVTKYRLEW_ FNDC3A|p.E791K|1|0.22|ENSG00000102531|chr13:49197755-49197755|G/A|missense_variant 4.715918219556657 0.45034159980724314 1 {[ES]|[DT]|[{I|L}C]}Y 3 7 14.705 0 0 1.1228 0 0 0 927.5079005935921 927.5079005935921 0.10090614668492215 0 0 0 0 0.4247425010840047 0 0 0 {[ES]|[DT]|[{I|L}C]}Y 1.1228 - 14 + NaN NaN 99288.2 NaN 9629 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12481 57.108 NaN 88617 35 0 5394.1 0.261 + -1 VYHLLGDMYT 10 40 614.2900175839691 1226.565482234738 2 614.2377319335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _VYHLLGDM(Oxidation (M))YT_ REV__ENSG00000053747|ENST00000313654|LAMA3;REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;REV__LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;REV__nc|ENSG00000053747|Q16787-1|LAMA3;REV__nc|ENSG00000053747|Q16787-3|LAMA3;REV__nc|ENSG00000053747|Q16787-4|LAMA3 1.4819007175156935 0.4674597685733628 1 P 1 -1 1.9897 0 0 0.16222 0 0 458.62158682633805 667.8631075494749 1126.484694375813 0 0 0 0 0 0 0 0 0 P 0.16222 - 1 + NaN NaN 101755.5 NaN 9630 2849 12472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12483 57.113 NaN 2292700 35 0 361670 0.327 + 27559 TADPLDYRL 9 105 532.2747190099266 1062.534885086653 2 532.2747802734375 MULTI HCD FTMS 0 0 0 12482 1176693.75 0.7316266772200868 -1 0.032848358154296875 1 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 87.25819977447905 0.004597812622239197 1 TADP{I|L}DYR{I|L} 9 0 + 89.241 0 0 8.3989 8.3989 90.357 0 0 0 6.983872475938838 6.983872475938838 6.983872475938838 6.983872475938838 0 2.610924374808178 1.6989700043360187 0.535666875892183 0.3494850021680094 + + TADP{I|L}DYR{I|L};[TA]DP{I|L}DYR{I|L};TADP{I|L}DHV[VP];T[{I|L}V]HD{I|L}PD[PG];[{I|L}T]VHD{I|L}P[PG]D;[DP][TA]{I|L}DYR{I|L};[{I|L}P]D[TA]DYR{I|L};[DP]{I|L}[TA]DYR{I|L};[{I|L}P]EGTDYR{I|L};[{I|L}P]D[PG][KA]PD[PG] 8.3989;7.7416;7.1031;5.3179;3.9801;3.3448;3.2002;3.1108;3.0838;2.5127 +;+;-;-;-;-;-;-;-;- + 1948 + NaN NaN 429423.5 NaN 9631 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12484 57.117 NaN 768060 35 0 71214 0.261 + 23368 RKQCEEVSSV 10 103 582.7866909556308 1163.5588289780615 2 582.7698364257812 MULTI HCD FTMS 0 0 0 12482 16995.146484375 0.7010702512029117 -1 0.032848358154296875 2 Unmodified _RKQCEEVSSV_ REV__ENSG00000164344|ENST00000264690|KLKB1 17.11289562659939 0.35104376501799556 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVYTSVS{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 + 59.914 0 0 5.1492 5.1492 83.887 0 0 0 4.81486060122112 3.845760471140558 3.845760471140558 4.81486060122112 0 0 1.6989700043360187 0.6505149978319906 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVYTSVS{[MS]|[{M(Oxidation (M))|F}A]};[HV]SVSTYVSW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVYTSVYAA;[YQ]VYTSVS{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RYTSVS{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RYTSMS[VS];[YG]AVYTSVS{[MS]|[{M(Oxidation (M))|F}A]};[YK]MSTYVSW;[HV]SVSTS[YV]W;{[CT]|[{M(Oxidation (M))|F}G]}SVYTSVYAA 5.1492;4.7354;4.4596;3.7926;3.661;3.6164;3.5816;3.5809;3.3826;3.2581 -;-;-;-;-;-;-;-;-;- 4589 NaN NaN 211515.3 NaN 9632 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12485 57.121 NaN 865960 35 0 93291 0.263 + 15805 LPHTDFTL 8 100 472.24781114897854 942.4810693647571 2 472.24774169921875 MULTI HCD FTMS 0 0 0 12482 101789.40625 0.036292249060265395 14 -0.38938140869140625 3 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 38.15118350030904 0.25467990583502337 1 [{I|L}P]YE[HA]T{I|L} 8 4 + 32.893 0 0 3.49 3.49 80.364 0 0 0 2.1876531584792502 1.549471895720984 1.549471895720984 2.1876531584792502 0 0.5440228147639203 2 0.3807196863200844 0 [{I|L}P]YE[HA]T{I|L};[YE][{I|L}P][HA]T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};[{I|L}P]{M(Oxidation (M))|F}QEV[NP];[YE]{M(Oxidation (M))|F}[KT][KQ];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VQ[DP]P{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EN[VP]P{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[AG][DP]P{I|L};[QT]K[YE]K{M(Oxidation (M))|F};[QT]K[SG]{I|L}Y{M(Oxidation (M))|F} 3.49;3.2579;3.1244;2.5532;2.3835;1.8753;1.1553;0.89252;0.75651;0.45412 -;-;-;-;-;-;-;-;-;- 1147 NaN NaN 211961 NaN 9633 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12486 57.124 NaN 504860 35 0 39018 0.261 -1 YPFMSQREL 9 74 593.7821483588662 1185.5497437845322 2 593.7819213867188 MULTI HCD FTMS 0 0 0 12482 103442.4375 0.6464690219410096 7 -0.2000732421875 4 Oxidation (M) _YPFM(Oxidation (M))SQREL_ PLXNB3|p.S755F|1|0.19|ENSG00000198753|chrX:153771320-153771320|C/T|missense_variant 14.838274106304384 0.23215694253501695 1 NVE{I|L} 4 -1 38.175 0 0 3.2201 0 0 712.2999134748062 0 712.2999134748062 0 24.24987554650805 0 0 0 0.3494850021680094 0 0 0.4247425010840047 NVE{I|L} 3.2201 - 150 NaN NaN 164598.2 NaN 9634 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12487 57.127 NaN 424670 35 0 66523 0.264 + 2823 DYLEKYYKF 9 70 423.54463972726137 1267.6120897819842 3 423.544921875 MULTI HCD FTMS 0 0 0 12482 57305.578125 0.09992600550019061 9 -0.24911880493164062 5 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 36.12702656103203 0.08312389501731911 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}KYE[YK]{M(Oxidation (M))|F} 9 2 + 57.412 0 0 4.5291 4.5291 88.659 0 0 0 42.80780288613954 8.696662315049934 8.696662315049934 21.293709283484077 0 0.8539171939081172 2 0.75 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}KYE[YK]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[HG]|PP}YK{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4.5291;2.8493 -;- 96 + NaN NaN 150403.1 NaN 9635 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12488 57.131 NaN 307180 35 0 31243 0.261 + 26744 SYEKVEFAL 9 81 543.2794553217416 1084.544357710283 2 543.2806396484375 MULTI HCD FTMS 0 0 0 12482 34200.69921875 0.03309430289473675 13 -0.3664741516113281 6 Unmodified _SYEKVEFAL_ REV__ENSG00000122481|ENST00000370202|RWDD3;REV__ENST00000263893.10_1_1:95710269-95712423:+|nuORF;REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF 28.494509381512117 0.11816142465008336 1 {I|L}RS{M(Oxidation (M))|F}EA{I|L} 7 -1 50.157 0 0 4.6247 0 0 250.09475905586095 0 250.09475905586095 0 26.000707439735322 0 0 0 1.6237125054200234 0 0 0 {I|L}RS{M(Oxidation (M))|F}EA{I|L} 4.6247 - 719 NaN NaN 132697.1 NaN 9636 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12489 57.134 NaN 118220 35 0 15852 0.261 -1 MRAQGWNYGQF 11 42 458.5401214656074 1372.5985349970222 3 458.5404968261719 MULTI HCD FTMS 0 0 0 12482 63236.09375 0.8360425996231197 1 -0.032894134521484375 7 Oxidation (M) _M(Oxidation (M))RAQGWNYGQF_ TGM6|p.I172M|1|0.33|ENSG00000166948|chr20:2396597-2396597|A/G|missense_variant 2.6312355333042263 0.4073809613003177 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.602 0 0 1207.519599305419 0 1207.519599305419 0 6.505149978319906 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.602 + + 14 + NaN NaN 100816.6 NaN 9637 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12490 57.137 NaN 321640 35 0 115870 0.261 -1 SWPRIIMRF 9 47 407.88994171490526 1220.6479957449158 3 407.8902282714844 MULTI HCD FTMS 0 0 0 12482 40683.20703125 0.213558582946696 -18 0.4708290100097656 8 Oxidation (M) _SWPRIIM(Oxidation (M))RF_ ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2686 0 0 1055.5690295357344 0 1055.5690295357344 0 0.7525749891599531 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2686 + + 16 + NaN NaN 128134 NaN 9638 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12491 57.141 NaN 116240 35 0 12413 0.261 + 17578 LYVQVLNI 8 40 481.288587669703 NaN 0 481.289794921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LYVQVLNI_ ENSG00000071991|ENST00000262150|CDH19;nc|ENSG00000071991|Q9H159-2|CDH19 5.760428011301431 0.38822285293237185 1 P 1 8 6.9897 0 0 0.72767 0 0 113.08223402444783 747.4023531549436 860.4845871793915 0 0 0 0 0 0 0 0 0 P 0.72767 - 3 + NaN NaN 90826.5 NaN 9639 2850 12482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12493 57.145 NaN 2011300 35 0 365500 0.327 + 8417 GYSEHFVEF 9 108 557.7455165912979 1113.4764802493958 2 557.7456665039062 MULTI HCD FTMS 0 0 0 12492 1301225.375 0.2779047846552223 6 -0.16717910766601562 1 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 103.74828524460852 0.00396301343438984 1 [YG]DTH{M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 9 2 + 82.377 0 0 7.3982 7.3982 92.236 0 0 0 19.990823894397565 64.08777639326507 19.990823894397565 12.698405410982616 0 2.6312033112643842 1.5228787452803376 0.8494850021680094 0 [YG]DTH{M(Oxidation (M))|F}VE{M(Oxidation (M))|F};[YG]DTH{M(Oxidation (M))|F}V{M(Oxidation (M))|F}E;[YG]DTH{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};[YG][QP][PG]EGY{M(Oxidation (M))|F};[YG][QP][PG]E{M(Oxidation (M))|F}YG;[YG][QP]{M(Oxidation (M))|F}WD{[DS]|[MA]|[CV]|TT};[YG]SER[VS]GME;{[ET]|[MV]}[DV]{[{M(Oxidation (M))|F}H]|[RQ]}GY{M(Oxidation (M))|F};{[QG]|[NA]}PY[PG]EGY{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[ES]|[DT]|[{I|L}C]}{[{M(Oxidation (M))|F}H]|[RQ]}GY{M(Oxidation (M))|F} 7.3982;6.2578;6.0116;3.439;2.3753;2.193;2.1688;1.8622;1.5982;1.4334 -;-;-;-;-;-;-;-;-;- 2019 NaN NaN 392568.2 NaN 9640 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12494 57.15 NaN 1858300 35 0 177000 0.261 + 34688 YPVDLGDKF 9 101 527.2662717961327 1052.5179906590654 2 527.2664184570312 MULTI HCD FTMS 0 0 0 12492 1282142.25 1 0 0 2 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 179.17365725063826 1.1335045685127237E-12 1 YPVD{I|L}GDK{M(Oxidation (M))|F} 9 0 + 128.53 0 0 12.212 12.212 97.553 0 0 0 73.47773721356819 16.47817481888636 16.47817481888636 21.281446971601298 0 3.1549471895720984 1.6989700043360187 1.4436726795685342 0.5994850021680094 + + YPVD{I|L}GDK{M(Oxidation (M))|F};YPVD{I|L}T[QA]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}GDK{M(Oxidation (M))|F};[VP]YD{I|L}GDK{M(Oxidation (M))|F};[VP]DY{I|L}GDK{M(Oxidation (M))|F};[VP]PDG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};[DV]PY{I|L}GDK{M(Oxidation (M))|F};[VP]DPG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}G{[QV]|[N{I|L}]|[RA]|[KV]}Y;[VP]D{I|L}YGDK{M(Oxidation (M))|F} 12.212;10.19;10.105;8.8901;7.9618;7.5392;7.1304;6.9683;6.9257;6.7474 +;-;+;-;-;-;-;-;-;- + 6442 + NaN NaN 355884.6 NaN 9641 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12495 57.153 NaN 1451400 35 0 147200 0.261 + 19568 NSTEPDPLL 9 88 493.2455666719803 984.4765804107607 2 493.75830078125 MULTI HCD FTMS 0 0 0 12492 84215.625 1 0 0 3 Unmodified _NSTEPDPLL_ ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 28.494509381512117 0.11816142465008336 1 [PA]{I|L}[C(Carbamidomethyl (C))S]SAPA 9 9 47.77 0 0 4.8523 0 0 0 127.04682034513259 127.04682034513259 18.195465984547443 0 0 0 0 0 1.6989700043360187 1.4916440611282624 0 [PA]{I|L}[C(Carbamidomethyl (C))S]SAPA 4.8523 - 1684 NaN NaN 317207 NaN 9642 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12496 57.157 NaN 740220 35 0 78608 0.261 + 21611 PYPFTHHWQF 10 74 453.88038074765984 1358.6193128431796 3 453.88043212890625 MULTI HCD FTMS 0 0 0 12492 275251.8125 0.9651289207830291 1 -0.032863616943359375 4 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 57.107585691075435 0.05194081441006845 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WQ][PA]HWQ{M(Oxidation (M))|F} 10 4 + 51.761 0 0 3.8099 3.8099 86.086 0 0 0 1.5224967362874509 10.073930987251387 1.5224967362874509 12.085521743960328 0 1.6861818737241734 2 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WQ][PA]HWQ{M(Oxidation (M))|F};[WQ]YP[PA]HWQ{M(Oxidation (M))|F};[WQ]Y[HK]H[VS]Q{M(Oxidation (M))|F};[WQ]YP[PA]HW[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[DS]|[MA]|[CV]|TT}[HK]HWQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[HQ]{[DS]|[MA]|[CV]|TT}HWQ{M(Oxidation (M))|F};[WQ]{M(Oxidation (M))|F}{I|L}[KC]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{M(Oxidation (M))|F};[WQ]{M(Oxidation (M))|F}{I|L}[KC]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[WQ]Y[HK]H{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WQ]YP[PA]H{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.8099;2.9203;2.6147;2.2458;2.142;2.142;1.0594;1.0111;0.71272;0.62397 -;-;-;-;-;-;-;-;-;- 642 NaN NaN 188658.8 NaN 9643 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12497 57.16 NaN 1040300 35 0 136630 0.261 + 4625 EYMEHVYLI 9 83 606.7841215460777 NaN 0 606.7840576171875 PEAK HCD FTMS 0 0 0 12492 556810.4375 0.6553437452140015 -2 0.06574249267578125 5 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 101.72198241140316 2.4150247537597212E-05 1 {I|L}YV 3 7 23.984 0 0 1.9796 0 0 131.09467959394743 702.2190035455686 833.3136831395161 0 0 0 0 0 1.3807196863200843 0 0 0 {I|L}YV 1.9796 - 107 + NaN NaN 246411.9 NaN 9644 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12498 57.163 NaN 1075700 35 0 191900 0.261 + 24981 RYVEIVSQF 9 83 570.805918644767 1139.5972843563338 2 570.805908203125 MULTI HCD FTMS 0 0 0 12492 361348.84375 0.6342008978398642 -2 0.06574249267578125 6 Unmodified _RYVEIVSQF_ ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41 75.5705956163825 0.007285660612518157 1 E{I|L}VSQ{M(Oxidation (M))|F} 6 3 81.424 0 0 7.145 0 0 418.2278518385588 0 418.2278518385588 0 63.36101611759766 0 0 0 2.8807196863200843 0 0.5629529932484498 1.0356668758921828 + E{I|L}VSQ{M(Oxidation (M))|F} 7.145 + + 1081 + NaN NaN 252664.2 NaN 9645 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12499 57.167 NaN 751030 35 0 127110 0.261 + 5700 FPAGYMYPSM 10 102 598.2433088441734 1194.4720647551467 2 598.2431640625 MULTI HCD FTMS 0 0 0 12492 290233.84375 0.7905347599727792 -25 0.6746749877929688 7 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 139.54400939418784 6.668095887891795E-07 1 [YT]DR{M(Oxidation (M))|F}YPST 9 6 68.712 0 0 5.7525 0 0 0 60.97018570006426 60.97018570006426 51.43175948177209 0 0 0 0 1.8494850021680094 1.5228787452803376 1.2302046884880937 0 [YT]DR{M(Oxidation (M))|F}YPST 5.7525 - 806 NaN NaN 195780.5 NaN 9646 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12500 57.17 NaN 566780 35 0 91155 0.264 + 1314 AYNKLNVFHW 10 78 431.22385186849715 1290.6497262056914 3 431.22418212890625 MULTI HCD FTMS 0 0 0 12492 89635.65625 0.4838491936341585 2 -0.05243682861328125 8 Unmodified _AYNKLNVFHW_ ENSG00000213614|ENST00000268097|HEXA;ENST00000563762.5_1_15:72640446-72647950:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA 42.312485326615175 0.12533928745458864 1 AYNK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W 10 0 + 87.74 0 0 6.7981 6.7981 87.162 0 0 0 36.53212513775344 5.796444610697478 5.796444610697478 5.796444610697478 0 1.1237125054200234 2 0 0.3807196863200844 + + AYNK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYNK{I|L}NV[WH]{M(Oxidation (M))|F};AYNK{I|L}GGV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYGGK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYGGK{I|L}NV[WH]{M(Oxidation (M))|F};AYNK{I|L}GGV[WH]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]TH{[SA]|[TG]}KN{[ES]|[DT]|[{I|L}C]};{[CT]|[{M(Oxidation (M))|F}G]}GSK{I|L}NV[WH]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}GSK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W 6.7981;6.349;6.088;6.088;5.6389;5.6389;2.704;2.4827;2.379 +;-;-;-;-;-;-;-;- + 227 + NaN NaN 170025.3 NaN 9647 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12501 57.173 NaN 720670 35 0 135240 0.261 + 22355 QPNGGEPFL 9 50 479.73509128757496 957.4556296419499 2 479.7347106933594 MULTI HCD FTMS 0 0 0 12492 326569.15625 0.33828130057930705 -5 0.127593994140625 9 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 46.020951573049366 0.037705236580089195 1 P{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.7806 0 0 582.2400339795657 0 582.2400339795657 0 21.593793813122062 0 0 0 1 0 0 0 + P{M(Oxidation (M))|F}{I|L} 3.7806 + + 38 NaN NaN 199222.7 NaN 9648 2851 12492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12503 57.178 NaN 1023700 35 0 99816 0.327 + 35454 YYEYNHDLF 9 96 632.2696861215486 1262.524819309897 2 632.2696533203125 MULTI HCD FTMS 0 0 0 12502 616257.0625 0.8694725087142456 1 -0.019573211669921875 1 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 100.0907132914201 0.004261551473353346 1 YYEYNHD{I|L}{M(Oxidation (M))|F} 9 0 + 78.918 0 0 6.2508 6.2508 89.894 0 0 0 19.925136038976405 6.104699792700586 6.104699792700586 12.09544243948811 0 2.142642683904553 2 1.0044321917401078 0.28872548999643577 + + YYEYNHD{I|L}{M(Oxidation (M))|F};YYEYGGHD{I|L}{M(Oxidation (M))|F};YYE[HN]YD{I|L}{M(Oxidation (M))|F};YYE{[QD]|[EN]|[WG]|[KD]|[RS]}VY{[{M(Oxidation (M))|F}H]|[RQ]};YYHTY{[DA]|[EG]}AYP;YYE[HN]{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[QP]{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[ES]|[DT]|[{I|L}C]}YWAYP;YYWW{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YY{M(Oxidation (M))|F}[QP]V{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.2508;5.2928;5.013;5.0115;3.867;3.8031;3.747;3.5637;3.5445;3.5051 +;-;-;-;-;-;-;-;-;- + 3800 + NaN NaN 250504.8 NaN 9649 2852 12502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12504 57.183 NaN 305160 35 0 25125 0.262 + 12694 KWNPTAGVAF 10 75 545.7880506340998 1089.5615483349995 2 545.7883911132812 MULTI HCD FTMS 0 0 0 12502 89176.375 0.1497429232394642 9 -0.24249649047851562 2 Unmodified _KWNPTAGVAF_ ENSG00000102978|ENST00000219252|POLR2C;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF 33.4449034751529 0.20229115034201947 1 RARA{M(Oxidation (M))|F} 5 7 40.406 0 0 3.7085 0 0 470.2030201642594 0 470.2030201642594 0 27.307131330965717 0 0 0 1 0 0 0.3494850021680094 RARA{M(Oxidation (M))|F} 3.7085 - 236 NaN NaN 139758.5 NaN 9650 2852 12502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12505 57.186 NaN 188780 35 0 13059 0.261 + 34285 YPDRIMNTF 9 75 578.7764311978499 1155.5383094624997 2 578.7766723632812 MULTI HCD FTMS 0 0 0 12502 67002.671875 0.02511112518090064 65 -1.74078369140625 3 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 31.26834338654808 0.10542797264966089 1 MNT{M(Oxidation (M))|F} 4 5 48.8 0 0 4.2231 0 0 644.3283558576187 0 644.3283558576187 0 39.84759407011602 0 0 0 1.305462187404089 0 0 0.3807196863200844 + MNT{M(Oxidation (M))|F} 4.2231 + + 217 NaN NaN 112396.5 NaN 9651 2852 12502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12506 57.19 NaN 186270 35 0 16537 0.262 + -1 PQMVHHCL 8 50 490.7261424441325 979.437731955065 2 490.7261047363281 MULTI HCD FTMS 0 0 0 12502 53639.37109375 0.37277298767105693 -5 0.137664794921875 4 Oxidation (M) _PQM(Oxidation (M))VHHCL_ REV__ENST00000496112.5_1_7:44251862-44252006:+|nuORF 9.347437153973935 0.5250182646323369 1 [QP]NNE 5 -1 18.244 0 0 1.8627 0 0 0 394.1745860102755 394.1745860102755 5.0565842292838425 0 0 0 0 0.3807196863200844 0 0 0 [QP]NNE 1.8627 - 41 + NaN NaN 123930.3 NaN 9652 2852 12502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12507 57.193 NaN 113630 35 0 11719 0.261 + 11707 KANPGAWIL 9 47 485.27929890291114 NaN 0 485.2799987792969 PEAK HCD FTMS 0 0 0 12502 46953.0859375 0.9457026942714523 2 -0.052448272705078125 5 Unmodified _KANPGAWIL_ ENSG00000102595|ENST00000376747|UGGT2;ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1 21.74664581756881 0.17567436591797916 1 {I|L}W 2 8 18.583 0 0 1.9187 0 0 131.09321359457687 535.26482553178 666.358039126357 0 0 0 0 0 0.7614393726401688 0 0 0 {I|L}W 1.9187 - 8 + NaN NaN 101681.4 NaN 9653 2852 12502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12509 57.198 NaN 1489600 35 0 432770 0.327 + 31988 VYPLMKEYF 9 82 603.2993627880326 1204.584172642865 2 603.2998046875 MULTI HCD FTMS 0 0 0 12508 724008.4375 0.21377183532792335 9 -0.25238800048828125 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 89.40071534611396 0.0045416704840156395 1 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 87.903 0 0 7.2974 7.2974 86.963 0 0 0 22.658715643802765 16.478174818886373 16.478174818886373 3.187587626244124 0 2.1549471895720984 1.6989700043360187 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KYE{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}[CS][{I|L}T]Y{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YE]K{M(Oxidation (M))|F} 7.2974;7.0327;5.8906;5.4788;5.4539;5.4163;5.3914;5.186;5.1605;4.9931 +;-;-;-;-;-;-;-;-;- + 2841 NaN NaN 310571.4 NaN 9654 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12510 57.202 NaN 1267800 35 0 102510 0.261 + 17017 LYIVADHTL 9 100 522.7899545355167 NaN 0 522.7716674804688 PEAK HCD FTMS 0 0 0 12508 17459.8046875 0.625725729698485 1 -0.03287506103515625 2 Unmodified _LYIVADHTL_ ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-2|ADAM33 21.74664581756881 0.17567436591797916 1 AV{I|L}EDP 6 7 33.721 0 0 3.2313 0 0 147.10247638494587 269.12969871674244 416.2321751016883 0 0 0 0 0 0 0 1.341129063296272 0 AV{I|L}EDP 3.2313 - 994 + NaN NaN 276849.1 NaN 9655 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12511 57.206 NaN 869330 35 0 210100 0.261 + 10547 IPIGIDKAL 9 70 470.29731574195284 938.5800785507057 2 470.2972412109375 MULTI HCD FTMS 0 0 0 12508 424050.875 0.4109478789329502 -3 0.08533096313476562 3 Unmodified _IPIGIDKAL_ ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5 106.94017166704063 0.003441928997083001 1 {I|L}P{I|L}G{I|L}DKA{I|L} 9 0 + 113.81 0 0 12.126 12.126 97.526 0 0 0 80.71694849945266 8.256886463274284 8.256886463274284 21.139829889124314 0 3.079689690656103 1.6989700043360187 1.6184151806525389 0 + + {I|L}P{I|L}G{I|L}DKA{I|L};[{I|L}P]{I|L}G{I|L}DKA{I|L};[{I|L}P]{I|L}GD{I|L}KA{I|L};[{I|L}P]G{I|L}{I|L}DKA{I|L};[{I|L}P]{I|L}GDK{I|L}A{I|L};[{I|L}P]{I|L}GDKA{I|L}{I|L};[{I|L}P]G{I|L}D{I|L}KA{I|L};[{I|L}P]{I|L}G{I|L}[NS]{I|L}{I|L};[{I|L}P]G{I|L}DK{I|L}A{I|L};[{I|L}P]G{I|L}DKA{I|L}{I|L} 12.126;9.8738;8.9491;8.8328;8.1758;7.9822;7.908;7.8714;7.1347;6.9411 +;+;-;-;-;-;-;-;-;- + 519 + NaN NaN 231532.4 NaN 9656 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12512 57.209 NaN 774110 35 0 118850 0.261 -1 HFDMAVYL 8 70 506.23375482749594 1010.4529567217919 2 506.2340393066406 MULTI HCD FTMS 0 0 0 12508 146787.796875 0.26296431257017483 -10 0.26525115966796875 4 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 VY{I|L} 3 -1 31.075 0 0 3.0753 0 0 617.2274037091812 0 617.2274037091812 0 25.5902924611682 0 0 0 0.7887254899964358 0 0 0 VY{I|L} 3.0753 + + 72 NaN NaN 208898.7 NaN 9657 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12513 57.213 NaN 788890 35 0 78490 0.261 + -1 PHWMLMLQL 9 82 592.8010125390391 1183.5874721448781 2 592.8020629882812 MULTI HCD FTMS 0 0 0 12508 265254.21875 0.1492352588220054 -6 0.15723800659179688 5 Oxidation (M) _PHWM(Oxidation (M))LMLQL_ REV__ENSG00000104365|ENST00000520810|IKBKB;REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF;REV__ENST00000517917.5_1_8:42128977-42177019:+|nuORF;REV__ENST00000518647.5_1_8:42129618-42174557:+|nuORF;REV__ENST00000520201.5_1_8:42129679-42177019:+|nuORF;REV__nc|ENSG00000104365|O14920-2|IKBKB;REV__nc|ENSG00000104365|O14920-4|IKBKB 28.486842064014134 0.11819662193267319 1 V{I|L}Q{I|L} 4 -1 45.433 0 0 3.8386 0 0 712.2802163276494 0 712.2802163276494 0 35.05729619579772 0 0 0 1.3494850021680094 0 0 0 V{I|L}Q{I|L} 3.8386 - 182 NaN NaN 213713.7 NaN 9658 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12514 57.216 NaN 549410 35 0 63851 0.261 + 4821 EYVSQHLVF 9 71 561.2849468854138 1120.5553408376275 2 561.7872924804688 MULTI HCD FTMS 0 0 0 12508 104841.7578125 0.5099701049995957 -3 0.08533096313476562 6 Unmodified _EYVSQHLVF_ ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 62.57269311338072 0.013982455292112035 1 [YE]VSQ[H{I|L}]V{M(Oxidation (M))|F} 9 0 + 54.732 0 0 4.8844 4.8844 86.044 0 0 0 14.547509540478032 14.547509540478032 14.547509540478032 9.208187539523749 0 1.6861818737241734 1.5228787452803376 0 0 + + [YE]VSQ[H{I|L}]V{M(Oxidation (M))|F};[YE]VS[AG][H{I|L}]V{M(Oxidation (M))|F};[YE]AP[R{I|L}][EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]P[R{I|L}]S[EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PS[R{I|L}][EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]SP[R{I|L}][EP]{M(Oxidation (M))|F} 4.8844;4.0626;3.5861;2.1764;1.9078;1.1536 +;-;-;-;-;- + 241 + NaN NaN 160501.3 NaN 9659 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12515 57.219 NaN 468640 35 0 31974 0.262 + 21067 PLYHAETI 8 78 472.24781114897854 942.4810693647571 2 472.2476501464844 MULTI HCD FTMS 0 0 0 12508 95031.7578125 0.03388286021332473 17 -0.46804046630859375 7 Unmodified _PLYHAETI_ nc|ENSG00000067225|P14618-3|PKM 34.18733598223924 0.30560024141787767 1 [{I|L}P]YE[HA]T{I|L} 8 2 + 36.519 0 0 3.8748 3.8748 80.999 0 0 0 2.7422750325201406 8.15552802072581 2.7422750325201406 2.7422750325201406 0 0.5994850021680094 1.6989700043360187 0.6421590589602533 0 [{I|L}P]YE[HA]T{I|L};[YE][{I|L}P][HA]T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};[{I|L}P]{M(Oxidation (M))|F}QEV[NP];[YE]{M(Oxidation (M))|F}KT[KQ];[{I|L}T]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HEP{I|L};[{I|L}T]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EHP{I|L} 3.8748;3.5838;3.1524;2.1697;1.867;1.474;1.2872 -;-;-;-;-;-;- 524 NaN NaN 149392 NaN 9660 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12516 57.223 NaN 286330 35 0 15701 0.261 + 35782 YYMLQRSSM 9 71 589.7727332938481 NaN 0 589.7594604492188 PEAK HCD FTMS 0 0 0 12508 17657.458984375 1 0 0 8 Unmodified _YYMLQRSSM_ nc|ENSG00000278540|Q13085-2|ACACA 10.823927491677226 0.2427956001690155 1 SV 2 8 13.271 0 0 1.127 0 0 236.10453607892572 752.3006075494749 988.4051436284005 0 0 0 0 0 0 0 0.3807196863200844 0 SV 1.127 - 130 + NaN NaN 130524.5 NaN 9661 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12517 57.226 NaN 112840 35 0 8503.1 0.261 + 14007 KYTEITATYF 10 53 618.8112397571922 1235.6079265811843 2 618.8114624023438 MULTI HCD FTMS 0 0 0 12508 31272.873046875 0.2282860699070985 4 -0.11474227905273438 9 Unmodified _KYTEITATYF_ ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL 21.590151480376914 0.30916502439568466 1 VTATY{M(Oxidation (M))|F} 6 5 59.826 0 0 4.8418 0 0 535.2653675763687 0 535.2653675763687 0 55.22160958700539 0 0 0 1.3807196863200843 0 0.4247425010840047 0 VTATY{M(Oxidation (M))|F} 4.8418 - 34 NaN NaN 96589.2 NaN 9662 2853 12508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12519 57.231 NaN 2797800 35 0 260090 0.327 + 1139 AYLEAIHNF 9 101 539.2717127924562 1076.5288726517124 2 539.2717895507812 MULTI HCD FTMS 0 0 0 12518 1601676.875 0.9691452979558224 1 -0.02291107177734375 1 Unmodified _AYLEAIHNF_ ENSG00000042753|ENST00000263270|AP2S1 147.05914393524117 1.1935124485855994E-05 1 AY{I|L}EA{I|L}HN{M(Oxidation (M))|F} 9 0 + 114.26 0 0 10.614 10.614 92.443 0 0 0 79.75704853247979 14.09256854528806 14.09256854528806 7.062032535593161 0 3.3182503180159344 1.6989700043360187 0.7742275032520141 1.1278623208748888 + + AY{I|L}EA{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HN{M(Oxidation (M))|F};AY{I|L}[DV]VHN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HGG{M(Oxidation (M))|F};AY{I|L}EA{I|L}HGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}A{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAH{I|L}N{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{I|L}HN{M(Oxidation (M))|F};AY{I|L}[DV]VHGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}A{I|L}HGG{M(Oxidation (M))|F} 10.614;9.9582;9.0728;8.7782;8.7112;8.5648;8.4463;8.3711;7.438;7.3848 +;+;-;-;-;-;-;-;-;- + 2543 + NaN NaN 502864.8 NaN 9663 2854 12518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12520 57.235 NaN 1449300 35 0 181010 0.261 + 25293 SAYEFYHAL 9 95 550.7560969661376 1099.4976409990752 2 550.7561645507812 MULTI HCD FTMS 0 0 0 12518 796987.9375 0.1833443803636807 6 -0.16711044311523438 2 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 133.70201269244603 0.0003804610509361063 1 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 89.056 0 0 8.0997 8.0997 87.337 0 0 0 1.3382353001069305 4.155214291848907 1.3382353001069305 1.3382353001069305 0 3 0 1.8243923658886185 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YE]TG{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}YHA{I|L};[YE]AS{M(Oxidation (M))|F}YHA{I|L};SAYE{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ES{M(Oxidation (M))|F}YHA{I|L};[YT]EG{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}T]DS{M(Oxidation (M))|F}YHA{I|L} 8.0997;7.978;7.9604;7.9252;7.7218;7.4848;6.8556;6.4328;6.38;5.9461 +;-;-;-;+;-;-;-;-;- + 3177 NaN NaN 320771.8 NaN 9664 2854 12518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12521 57.239 NaN 1740700 35 0 290040 0.261 -1 DPRNATSVCI 10 109 566.7738872279571 1131.533221522714 2 566.774658203125 MULTI HCD FTMS 0 0 0 12518 761369.5 0.01774936289496945 40 -1.0377731323242188 3 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 26.268140514670165 0.2654086933305545 1 AP{M(Oxidation (M))|F}STSVSW 9 -1 84.11 0 0 7.4333 0 0 151.07303555114692 0 151.07303555114692 0 64.86494082808355 0 0 0 2.774227503252014 0 1.7051120522087029 0 AP{M(Oxidation (M))|F}STSVSW 7.4333 - 5740 + NaN NaN 347824.7 NaN 9665 2854 12518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12522 57.242 NaN 175100 35 0 11945 0.261 + 18500 MRLGCVQGL 9 61 496.7558889927669 991.4972250523339 2 496.7564697265625 MULTI HCD FTMS 0 0 0 12518 53282.62890625 0.636523471568903 1 -0.02291107177734375 4 Oxidation (M) _M(Oxidation (M))RLGCVQGL_ REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF 48.345845343767074 0.03388484103555672 1 {[QV]|[N{I|L}]|[RA]|[KV]}A{[YD]|[{M(Oxidation (M))|F}M]}VQG{I|L} 9 -1 + 49.97 0 0 5.0398 5.0398 86.355 0 0 0 1.367640270735464 29.000606022938697 1.367640270735464 9.208187539523749 0 1.5 0 0 1.086696871556164 {[QV]|[N{I|L}]|[RA]|[KV]}A{[YD]|[{M(Oxidation (M))|F}M]}VQG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}A{[YD]|[{M(Oxidation (M))|F}M]}V[AG]G{I|L} 5.0398;4.1111 -;- 75 NaN NaN 109920 NaN 9666 2854 12518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12523 57.245 NaN 124280 35 0 9131.1 0.261 -1 VYKAFVMETF 10 48 625.8099156559057 1249.6052783786113 2 626.3106079101562 MULTI HCD FTMS 0 0 0 12518 60940.77734375 0.27824968884083273 -11 0.298126220703125 5 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 16.149105407346934 0.3600587335443843 1 MKQP{M(Oxidation (M))|F} 5 -1 24.781 0 0 1.9831 0 0 600.2570667951187 0 600.2570667951187 0 14.648415687162952 0 0 0 0 0 0 0 MKQP{M(Oxidation (M))|F} 1.9831 - 49 NaN NaN 104220.9 NaN 9667 2854 12518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12524 57.249 NaN 414330 35 0 44622 0.262 + 26745 SYEKVEFAL 9 105 543.2794553217416 1084.544357710283 2 543.280029296875 MULTI HCD FTMS 0 0 0 12518 38521.47265625 0.03727529884354952 17 -0.46477508544921875 6 Unmodified _SYEKVEFAL_ REV__ENSG00000122481|ENST00000370202|RWDD3;REV__ENST00000263893.10_1_1:95710269-95712423:+|nuORF;REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF 18.373094154950223 0.20161688160436167 1 V{M(Oxidation (M))|F}EA{I|L} 5 -1 36.969 0 0 3.4087 0 0 507.2345143048844 0 507.2345143048844 0 7.80971293110397 0 0 0 0.9802046884880937 0 0 0 V{M(Oxidation (M))|F}EA{I|L} 3.4087 - 585 NaN NaN 140372.9 NaN 9668 2854 12518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12526 57.254 NaN 1854300 35 0 303090 0.327 + 27560 TADPLDYRL 9 100 532.2747190099266 1062.534885086653 2 532.27490234375 MULTI HCD FTMS 0 0 0 12525 983662.4375 0.6116066144265118 4 -0.108001708984375 1 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 96.93554129104106 0.004344229100022454 1 TADP{I|L}DYR{I|L} 9 0 + 87.929 0 0 8.2754 8.2754 94.041 0 0 0 67.23730771860689 9.251736484954378 9.251736484954378 14.243814029231046 0 2.4361818737241734 1.5228787452803376 0.5752574989159953 0.2742275032520141 + + TADP{I|L}DYR{I|L};[TA]DP{I|L}DYR{I|L};TADP{I|L}D[HV][VP];TADP{I|L}[KA][NS]{M(Oxidation (M))|F} 8.2754;6.9348;6.8686;6.1441 +;+;-;- + 1117 + NaN NaN 365455 NaN 9669 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12527 57.258 NaN 672030 35 0 56892 0.261 + 5406 FHATTSEVSW 10 98 582.7692560816736 1163.523959230147 2 582.7698364257812 MULTI HCD FTMS 0 0 0 12525 263480.96875 0.028030570182978908 41 -1.0610466003417969 2 Unmodified _FHATTSEVSW_ ENSG00000155380|ENST00000369626|SLC16A1;nc|ENSG00000155380|P53985-2|SLC16A1 24.020572477871973 0.2864316864133941 1 SVS[YT]VSW 8 6 66.992 0 0 5.7577 0 0 236.07762332123758 0 236.07762332123758 0 43.80485524684586 0 0 0 2.56295299324845 0 0.9247425010840047 0 SVS[YT]VSW 5.7577 - 1961 + NaN NaN 185496 NaN 9670 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12528 57.262 NaN 1305600 35 0 79149 0.261 + 29454 TYTVRTFAL 9 115 536.2952652119646 1070.5759774907292 2 536.2954711914062 MULTI HCD FTMS 0 0 0 12525 295937.9375 0.9847979451342526 -1 0.02291107177734375 3 Unmodified _TYTVRTFAL_ ENSG00000142949|ENST00000359947|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF;nc|ENSG00000142949|P10586-2|PTPRF 45.739877483867886 0.03899552410870734 1 [YT]TV 4 5 32.409 0 0 3.0273 0 0 0 603.3260748039961 603.3260748039961 4.145001302259324 0 0 0 0 0.3494850021680094 1.6989700043360187 0.3252574989159953 0 + [YT]TV 3.0273 + + 2809 + NaN NaN 281444.6 NaN 9671 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12529 57.265 NaN 526950 35 0 35130 0.261 + 1372 AYPHNLMTF 9 93 547.2601473981192 1092.5057418630383 2 547.26025390625 MULTI HCD FTMS 0 0 0 12525 226405.078125 0.7147038777596517 -3 0.07535934448242188 4 Unmodified _AYPHNLMTF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 88.90359156742426 0.00455469703666567 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}MT{M(Oxidation (M))|F} 9 2 + 76.498 0 0 7.0021 7.0021 90.643 0 0 0 27.81665831563508 58.70658301057772 27.81665831563508 9.648167490521175 0 1.4247425010840047 2 0.7302046884880937 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVVC(Carbamidomethyl (C))T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVV[CG]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVV{[CA]|SS}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{I|L}{M(Oxidation (M))|F}[RN]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}Y{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[C(Carbamidomethyl (C))K]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}V][VS]C(Carbamidomethyl (C))T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}{[ES]|[DT]|[{I|L}C]}Y 7.0021;6.119;5.895;5.2761;4.6573;4.3789;4.2282;4.1174;3.9755;3.5638 -;-;-;-;-;-;-;-;-;- 1065 NaN NaN 162919.3 NaN 9672 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12530 57.268 NaN 348280 35 0 19614 0.261 + 27299 SYQKLLFKF 9 92 587.3370575618288 1172.6595621904576 2 587.3372192382812 MULTI HCD FTMS 0 0 0 12525 154244.859375 0.830897400783487 2 -0.058956146240234375 5 Unmodified _SYQKLLFKF_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant 72.96794272382148 0.008127836904478181 1 {M(Oxidation (M))|F}{I|L}[K{I|L}]QCE 7 7 40.639 0 0 3.4656 0 0 293.17454726386876 0 293.17454726386876 0 15.461958859186197 0 0 0 2.06295299324845 0 0 0.3054621874040891 {M(Oxidation (M))|F}{I|L}[K{I|L}]QCE 3.4656 - 453 NaN NaN 133465.2 NaN 9673 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12531 57.272 NaN 461530 35 0 45464 0.261 + 1863 CVSSFFAISW 10 80 573.7657539071055 1145.5169548810109 2 574.7731323242188 MULTI HCD FTMS 0 0 0 12525 143037.234375 0.03442030494948842 40 -1.0216560363769531 6 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 25.399314129420986 0.2735354021946395 1 {[MS]|[{M(Oxidation (M))|F}A]}SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 11 7 + 49.289 0 0 4.3028 4.3028 83.242 0 0 0 4.247425010840047 4.247425010840047 4.247425010840047 6.575773191777934 0 0 0 1.110924374808178 0 {[MS]|[{M(Oxidation (M))|F}A]}SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT};{[MS]|[{M(Oxidation (M))|F}A]}WST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT};{[MS]|[{M(Oxidation (M))|F}A]}SWT{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT};{[MS]|[{M(Oxidation (M))|F}A]}SVST[YV]A{[DS]|[MA]|[CV]|TT};{[MS]|[{M(Oxidation (M))|F}A]}SWT[YV]SW;{[MS]|[{M(Oxidation (M))|F}A]}WST[YV]SW;{[CT]|[{M(Oxidation (M))|F}G]}S[YV]TSVS{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}SWT[YV]A{[DS]|[MA]|[CV]|TT};{[MS]|[{M(Oxidation (M))|F}A]}WST[YV]A{[DS]|[MA]|[CV]|TT};[SG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 4.3028;3.7287;3.7287;3.3179;3.0928;3.0928;2.863;2.7439;2.7439;2.662 -;-;-;-;-;-;-;-;-;- 711 + NaN NaN 152148.1 NaN 9674 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12532 57.275 NaN 218090 35 0 17120 0.261 + 18602 MVTSLEESL 9 70 512.7465403512367 1023.4785277692735 2 512.7462768554688 MULTI HCD FTMS 0 0 0 12525 79564.0703125 0.6606112050915357 -2 0.0557861328125 7 Oxidation (M) _M(Oxidation (M))VTSLEESL_ ENSG00000047410|ENST00000367478|TPR 88.90359156742426 0.00455469703666567 1 ETVEES{I|L} 7 4 56.675 0 0 5.5375 0 0 218.1081257550797 0 218.1081257550797 0 49.75132007365232 0 0 0 1.4247425010840047 0 1.274227503252014 0 ETVEES{I|L} 5.5375 - 255 NaN NaN 113774.8 NaN 9675 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12533 57.278 NaN 181080 35 0 37198 0.261 -1 VPEELLMAI 9 71 515.7798273628288 1029.5451017924574 2 515.7787475585938 MULTI HCD FTMS 0 0 0 12525 22803.251953125 0.29698933670953154 4 -0.108001708984375 8 Oxidation (M) _VPEELLM(Oxidation (M))AI_ ENST00000517306.5_1_14:91666126-91666174:+|nuORF 11.640296217721598 0.25978676193971967 1 A{I|L} 2 -1 19.464 0 0 1.8905 0 0 827.4188099591812 0 827.4188099591812 0 4.515449934959719 0 0 0 0 0 0 0 A{I|L} 1.8905 + + 66 NaN NaN 109314.1 NaN 9676 2855 12525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12535 57.283 NaN 874140 35 0 148380 0.327 + 8418 GYSEHFVEF 9 86 557.7455165912979 1113.4764802493958 2 557.7457885742188 MULTI HCD FTMS 0 0 0 12534 403189.21875 0.08610976635160228 11 -0.3008155822753906 1 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 81.61307344734483 0.005330412723537057 1 [YG]{[ES]|[DT]|[{I|L}C]}H{M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 9 0 + 46.453 0 0 4.1719 4.1719 88.59 0 0 0 30.30877995733176 0.9052732131057297 0.9052732131057297 26.13982988912431 0 2.06295299324845 1.5228787452803376 0.8252574989159953 0 + + [YG]{[ES]|[DT]|[{I|L}C]}H{M(Oxidation (M))|F}VE{M(Oxidation (M))|F};{[SA]|[TG]}{[YD]|[{M(Oxidation (M))|F}M]}H{M(Oxidation (M))|F}VE{M(Oxidation (M))|F};[RP]T{[ES]|[DT]|[{I|L}C]}{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WC(Carbamidomethyl (C))[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]} 4.1719;1.8243;1.0408;0.11624 +;-;-;- + 404 + NaN NaN 220972.8 NaN 9677 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12536 57.288 NaN 543650 35 0 74255 0.261 + 18781 NADPIAKYL 9 73 502.77427923256914 1003.5340055319383 2 502.7743835449219 MULTI HCD FTMS 0 0 0 12534 181389.125 0.30979362647647546 -4 0.10482025146484375 2 Unmodified _NADPIAKYL_ ENSG00000172716|ENST00000685675|SLFN11 40.23920728925047 0.06424668180817725 1 {[QG]|[NA]}D[{I|L}P]AKY{I|L} 9 0 + 60.082 0 0 5.9871 5.9871 91.224 0 0 0 25.901084905090535 44.302703039167255 25.901084905090535 22.373796257579095 0 1.3807196863200843 1.5228787452803376 0 0.6643943297944485 + + {[QG]|[NA]}D[{I|L}P]AKY{I|L};{[QG]|[NA]}D[{I|L}P]A[Y{I|L}]K;{[QG]|[NA]}D[{I|L}A]PKY{I|L};{[QG]|[NA]}D[{I|L}A]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L} 5.9871;3.7576;3.1674;2.3508 +;-;-;- + 167 NaN NaN 163545.7 NaN 9678 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12537 57.291 NaN 515010 35 0 212250 0.262 + -1 LCLVEISFQL 10 47 407.88994171490526 1220.6479957449158 3 407.8902282714844 MULTI HCD FTMS 0 0 0 12534 139138.15625 0.7303786906411198 -12 0.3176116943359375 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))LVEISFQL_ REV__ENST00000505484.5_1_4:121737953-121738025:-|nuORF 3.3196427980023873 0.4577323075863651 1 S 1 -1 11.99 0 0 0.98224 0 0 947.5366727579686 183.0563906305297 1130.5930633884984 0 0 0 0 0 0.5 0 0 0 S 0.98224 + + 17 + NaN NaN 149735.2 NaN 9679 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12538 57.295 NaN 109600 35 0 24842 0.261 + 8024 GGFFHCLP 8 43 439.2046331278129 876.3947133224258 2 439.20489501953125 MULTI HCD FTMS 0 0 0 12534 29770.34375 0.44968652022820155 1 -0.0294952392578125 4 Unmodified _GGFFHCLP_ REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF 17.086550045450526 0.4680768486079041 1 N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 31.827 0 0 3.6316 0 0 0 465.19309412174067 465.19309412174067 13.243923658886185 0 0 0 0 0.7134679910804405 0 0 0 N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6316 - 45 + NaN NaN 101185.3 NaN 9680 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12539 57.298 NaN 427720 35 0 47841 0.261 + 31615 VYINEVRVI 9 64 552.8241917657332 1103.6338305982663 2 552.8236694335938 MULTI HCD FTMS 0 0 0 12534 82948.9296875 1 0 0 5 Unmodified _VYINEVRVI_ ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA 43.981846655682396 0.04706587046877104 1 [YV]{I|L}NEVRV{I|L} 9 0 + 67.731 0 0 6.137 6.137 88.17 0 0 0 48.26660305958029 7.632192780232785 7.632192780232785 9.208187539523749 0 2.2658715643802765 1.6989700043360187 0 0 + + [YV]{I|L}NEVRV{I|L};[YV]{I|L}GGEVRV{I|L} 6.137;5.3027 +;- + 305 + NaN NaN 153379.9 NaN 9681 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12540 57.301 NaN 96495 35 0 5186.7 0.261 + -1 YNFFLECHM 9 55 638.7584864105518 1275.5024198879034 2 639.259033203125 MULTI HCD FTMS 0 0 0 12534 28657.626953125 0.5229277027313106 5 -0.13767623901367188 6 Carbamidomethyl (C),Oxidation (M) _YNFFLEC(Carbamidomethyl (C))HM(Oxidation (M))_ REV__PTH2R|p.S403Y|1|0.5|ENSG00000144407|chr2:208489143-208489143|C/A|missense_variant 7.910154910731844 0.2910521888787154 1 [YN]A 3 -1 35.942 0 0 2.8179 0 0 0 924.3349769222302 924.3349769222302 20.440228147639203 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [YN]A 2.8179 - 28 + NaN NaN 99657.3 NaN 9682 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12541 57.304 NaN 111850 35 0 5660.8 0.261 -1 0 47 617.1241447337269 NaN 0 617.302978515625 PEAK HCD FTMS 0 0 0 12534 20953.919921875 0.5794781243423864 4 -0.11473846435546875 7 NaN NaN 1 P 1 -1 6.9897 0 0 0.56724 0 0 479.3451389774162 652.8002413385374 1132.1453803159536 0 0 0 0 0 0 0 0 0 P 0.56724 - 5 + NaN NaN 95664.7 NaN 9683 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12542 57.308 NaN 141220 35 0 7485.8 0.261 + 9771 HYIYIENQF 9 53 613.7957080050779 1225.5768630769558 2 613.7959594726562 MULTI HCD FTMS 0 0 0 12534 35017.5859375 0.8869922021484906 -2 0.052371978759765625 8 Unmodified _HYIYIENQF_ ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF;nc|ENSG00000075651|Q13393-2|PLD1;nc|ENSG00000075651|Q13393-4|PLD1 13.042465956692817 0.2476723265019929 1 {I|L}ENQ{M(Oxidation (M))|F} 5 4 40.261 0 0 3.2851 0 0 576.2711048810562 0 576.2711048810562 0 33.2711470149615 0 0 0 0.3807196863200844 0 0 0 + {I|L}ENQ{M(Oxidation (M))|F} 3.2851 + + 22 NaN NaN 110631.8 NaN 9684 2856 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12544 57.313 NaN 1338500 35 0 254180 0.327 + 22356 QPNGGEPFL 9 58 479.73509128757496 957.4556296419499 2 479.7350769042969 MULTI HCD FTMS 0 0 0 12543 928321.0625 0.9616145626969761 1 -0.036136627197265625 1 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 74.92900055777586 0.007493270374442853 1 EP{M(Oxidation (M))|F}{I|L} 4 5 50.988 0 0 5.3253 0 0 453.1981678693375 0 453.1981678693375 0 28.3116097541118 0 0 0 1.25 0 1.1549471895720984 0 + EP{M(Oxidation (M))|F}{I|L} 5.3253 + + 190 NaN NaN 284371.5 NaN 9685 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12545 57.317 NaN 661210 35 0 84557 0.261 + 4626 EYMEHVYLI 9 72 606.7841215460777 NaN 0 606.7842407226562 PEAK HCD FTMS 0 0 0 12543 415418.40625 0.488930946418738 4 -0.10818099975585938 2 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 77.98433622928108 0.0036487741833262305 1 {I|L}YV 3 7 26.682 0 0 2.2023 0 0 131.09495847748263 702.2175387018186 833.3124971793013 0 0 0 0 0 1.3494850021680094 0 0 0 {I|L}YV 2.2023 - 106 + NaN NaN 185247.7 NaN 9686 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12546 57.321 NaN 658680 35 0 76693 0.263 + 19569 NSTEPDPLL 9 78 493.2455666719803 984.4765804107607 2 493.75823974609375 MULTI HCD FTMS 0 0 0 12543 22163.80078125 0.263179199599243 6 -0.16640090942382812 3 Unmodified _NSTEPDPLL_ ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 18.1463463914782 0.20357593197100715 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{M(Oxidation (M))|F}SAPA 8 8 43.736 0 0 4.4425 0 0 0 127.0458561959589 127.0458561959589 9.900870525606493 0 0 0 0 0 1.3979400086720375 0.805462187404089 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{M(Oxidation (M))|F}SAPA 4.4425 - 524 NaN NaN 179698.8 NaN 9687 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12547 57.324 NaN 694760 35 0 74420 0.261 + 34689 YPVDLGDKF 9 79 527.2662717961327 1052.5179906590654 2 527.2665405273438 MULTI HCD FTMS 0 0 0 12543 315463.9375 0.24604441316866363 6 -0.16640090942382812 4 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 128.93241758739586 0.0006697181619526092 1 YPVD{I|L}GDK{M(Oxidation (M))|F} 9 0 + 118.55 0 0 11.263 11.263 97.938 0 0 0 94.28965350852792 16.478174818886373 16.478174818886373 26.19911285071794 0 3.110924374808178 1.6989700043360187 1.7302046884880937 0.2614393726401688 + + YPVD{I|L}GDK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}GDK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}GD{M(Oxidation (M))|F}K;[VP]YD{I|L}GDK{M(Oxidation (M))|F};[VP]PDG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}G{[QV]|[N{I|L}]|[RA]|[KV]}Y;[VP]DPG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};[VP]DY{I|L}GDK{M(Oxidation (M))|F};[VP]YD{I|L}GD{M(Oxidation (M))|F}K;[DV]PPG{I|L}D{[HG]|PP}{M(Oxidation (M))|F} 11.263;8.774;7.5366;6.8432;6.5421;6.3;6.0199;5.7962;5.6058;5.0749 +;+;-;-;-;-;-;-;-;- + 1241 + NaN NaN 193996.8 NaN 9688 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12548 57.327 NaN 487100 35 0 77357 0.261 + 11981 KFVKKESQF 9 77 570.8253767591591 1139.636200585118 2 570.8062133789062 MULTI HCD FTMS 0 0 0 12543 13461.2392578125 0.4261439578722983 -5 0.13431549072265625 5 Unmodified _KFVKKESQF_ REV__ENSG00000198146|ENST00000356321|ZNF770 11.640296217721598 0.25978676193971967 1 QSV{I|L}E[RP]{M(Oxidation (M))|F} 8 -1 41.419 0 0 3.6344 0 0 165.11824093470403 0 165.11824093470403 0 28.716459608685483 0 0 0 0 0 0.805462187404089 0 QSV{I|L}E[RP]{M(Oxidation (M))|F} 3.6344 - 470 + NaN NaN 172506.5 NaN 9689 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12549 57.331 NaN 705860 35 0 131140 0.261 + 5701 FPAGYMYPSM 10 83 598.2433088441734 1194.4720647551467 2 598.2434692382812 MULTI HCD FTMS 0 0 0 12543 311703.5625 0.8490136704244977 -19 0.517608642578125 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 112.59319219568356 4.798275876566979E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 0 + 70.13 0 0 5.8712 5.8712 83.58 0 0 0 4.5170715688496585 51.71366835166447 4.5170715688496585 1.4928876664371415 0 2.412437995416459 1.2218487496163564 0.7302046884880937 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[YT][RD]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YT][RD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5.8712;5.7462;5.1776;4.5037;4.4915;4.3666;4.3036;4.2167;4.011;3.8813 +;-;-;-;-;-;-;-;-;- + 1581 NaN NaN 187980.6 NaN 9690 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12550 57.334 NaN 602290 35 0 40706 0.261 + -1 DLHCSLSVLC 10 88 573.7657539071055 1145.5169548810109 2 573.7642211914062 MULTI HCD FTMS 0 0 0 12543 163887.515625 0.023892337159095507 43 -1.1212844848632812 7 Carbamidomethyl (C) _DLHCSLSVLC(Carbamidomethyl (C))_ REV__ENSG00000146755|ENST00000333149|TRIM50;REV__nc|ENSG00000146755|Q86XT4-2|TRIM50 25.399314129420986 0.2735354021946395 1 {NN|[MP]|[D{I|L}]|[EV]}VE[DP]SVSW 10 -1 + 52.609 0 0 4.5926 4.5926 82.058 0 0 0 3.637050223691894 11.29084198346633 3.637050223691894 3.0102999566398125 0 1.2302046884880937 0 0.8633643341304672 0.25 {NN|[MP]|[D{I|L}]|[EV]}VE[DP]SVSW;{NN|[MP]|[D{I|L}]|[EV]}{I|L}D[DP]SVSW;{[QV]|[N{I|L}]|[RA]|[KV]}DYYSVSW;{[CT]|[{M(Oxidation (M))|F}G]}SV[YT]SVS{[CP]|[EA]};{NN|[MP]|[D{I|L}]|[EV]}VE[TP]{[CP]|[EA]}SW;{[QV]|[N{I|L}]|[RA]|[KV]}Y{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}VSW;{NN|[MP]|[D{I|L}]|[EV]}NYYSVS[VS];{[QV]|[N{I|L}]|[RA]|[KV]}DYYWSW;{[QV]|[N{I|L}]|[RA]|[KV]}Y[YT]{[CP]|[EA]}SW;[YQ]V{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}VSW 4.5926;4.3298;3.9072;3.6545;3.2147;3.1794;3.1095;3.0751;3.0748;3.0593 -;-;-;-;-;-;-;-;-;- 1468 NaN NaN 194977.2 NaN 9691 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12551 57.337 NaN 676650 35 0 104560 0.261 + 16203 LPVQPENAL 9 76 490.7742814190735 979.534009904947 2 490.774169921875 MULTI HCD FTMS 0 0 0 12543 247114 0.6035500826903473 -3 0.08186721801757812 8 Unmodified _LPVQPENAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 69.10491478415734 0.009377850133389008 1 [{I|L}P]VQ[EP]NA{I|L} 9 0 + 66.194 0 0 6.7577 6.7577 89.325 0 0 0 13.891252645201781 58.74684165050624 13.891252645201781 9.208187539523749 0 1.8494850021680094 1.0969100130080565 0.3252574989159953 0.3054621874040891 + + [{I|L}P]VQ[EP]NA{I|L};[{I|L}P]V[AG][EP]NA{I|L};[{I|L}P]VQ[EP]GGA{I|L};[{I|L}P]V{NN|[MP]|[D{I|L}]|[EV]}D[VP]{I|L} 6.7577;5.8177;5.8177;2.7495 +;-;-;- + 189 NaN NaN 180917 NaN 9692 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12552 57.341 NaN 298320 35 0 31742 0.261 + 21612 PYPFTHHWQF 10 68 453.88038074765984 1358.6193128431796 3 454.21490478515625 MULTI HCD FTMS 0 0 0 12543 43746.109375 0.17045982644306923 7 -0.18930816650390625 9 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 17.86316937532769 0.34402595751606074 1 PY 2 8 45.217 0 0 3.3281 0 0 0 1095.480900895766 1095.480900895766 14.29892479403911 0 0 0 0 0.4247425010840047 2 0 0 + PY 3.3281 + + 87 + NaN NaN 149697 NaN 9693 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12553 57.344 NaN 284470 35 0 19954 0.261 + 15806 LPHTDFTL 8 76 472.24781114897854 942.4810693647571 2 472.24761962890625 MULTI HCD FTMS 0 0 0 12543 74994.59375 0.026738759708095094 21 -0.5830955505371094 10 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 24.67388899826682 0.4122521268485776 1 [{I|L}P][YE][HA]T{I|L} 8 4 + 33.478 0 0 3.5521 3.5521 59.64 0 0 0 0 0.22395120336037166 0 0 0 0.3807196863200844 2 0.3807196863200844 0 [{I|L}P][YE][HA]T{I|L};[YE][{I|L}P][HA]T{I|L};[{I|L}P]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[EP]{I|L};{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]T{I|L};[NS][VG]KYY{I|L};[TA]GQKYY{I|L} 3.5521;3.5521;3.4676;0.85279;0.60388;0.41853 -;-;-;-;-;- 312 NaN NaN 132598.7 NaN 9694 2857 12543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12555 57.349 NaN 978120 35 0 258960 0.327 + 18564 MVFSFIWEF 9 92 603.2873655165023 NaN 0 603.299560546875 PEAK HCD FTMS 0 0 0 12554 42663.3515625 0.7470412651076258 -1 0.036136627197265625 1 Unmodified _MVFSFIWEF_ ENST00000454389.5_2_3:27433241-27433286:-|nuORF 28.486842064014134 0.13043271994793734 1 PPQ[{I|L}P]QC 7 8 18.478 0 0 1.534 0 0 165.05651615281278 273.1239412897094 438.1804574425222 0 0 0 0 0 1.274227503252014 0 0 0.6307196863200843 PPQ[{I|L}P]QC 1.534 - 393 + NaN NaN 234909.3 NaN 9695 2858 12554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12556 57.353 NaN 1108800 35 0 54947 0.261 + 28114 TIIDILTKR 9 113 536.8397462232732 1071.6649395133463 2 536.8400268554688 MULTI HCD FTMS 0 0 0 12554 215470.765625 0.8423534659222344 1 -0.012908935546875 2 Unmodified _TIIDILTKR_ ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF 51.41523569358685 0.02959097413485123 1 [{I|L}T]{I|L}D{I|L}{I|L}TKR 9 0 + 74.184 0 0 6.9223 6.9223 93.142 0 0 0 55.65472841962661 12.096142931993441 12.096142931993441 24.63590517863841 0 1.3129529932484498 2 0.3252574989159953 0 + + [{I|L}T]{I|L}D{I|L}{I|L}TKR;[{I|L}T]{I|L}{I|L}{I|L}DTKR;[{I|L}T]{I|L}D{I|L}[RK][{I|L}T];{[QN]|[E{I|L}]|[KN]}VT{I|L}[RK][{I|L}T] 6.9223;4.6235;3.1702;1.4047 +;-;-;- + 1236 + NaN NaN 255066.5 NaN 9696 2858 12554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12557 57.357 NaN 346260 35 0 36147 0.261 + 4822 EYVSQHLVF 9 73 561.2849468854138 1120.5553408376275 2 561.2847900390625 MULTI HCD FTMS 0 0 0 12554 111461.921875 0.37802876077400277 2 -0.049106597900390625 3 Unmodified _EYVSQHLVF_ ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 47.748688679222035 0.03472022231463587 1 [YE]VSQ[H{I|L}]V{M(Oxidation (M))|F} 9 0 + 40.121 0 0 3.5805 3.5805 84.313 0 0 0 26.69305883595733 15.300625020341556 15.300625020341556 9.208187539523749 0 1.1861818737241734 1.0969100130080565 0 0 + + [YE]VSQ[H{I|L}]V{M(Oxidation (M))|F};[YE]VS[AG][H{I|L}]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PS[R{I|L}][EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]P[R{I|L}]S[EP]{M(Oxidation (M))|F} 3.5805;2.7587;2.3331;2.2625 +;-;-;- + 171 + NaN NaN 154144.5 NaN 9697 2858 12554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12559 57.362 NaN 2557300 35 0 344360 0.327 + 9065 HPEYGEVIQL 10 106 592.8010125390391 1183.5874721448781 2 592.8012084960938 MULTI HCD FTMS 0 0 0 12558 1777423.25 1 0 0 1 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 137.42381684818497 4.888103709425586E-06 1 CEYWV{I|L}[Q{I|L}] 8 4 61.565 0 0 5.2015 0 0 131.09413143724743 0 131.09413143724743 0 38.697887582883936 0 0 0 2.110924374808178 0 0.3252574989159953 1.860924374808178 CEYWV{I|L}[Q{I|L}] 5.2015 - 963 + NaN NaN 469910.7 NaN 9698 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12560 57.366 NaN 1672600 35 0 268800 0.261 -1 DPRNATSVCI 10 104 566.7738872279571 1131.533221522714 2 566.774658203125 MULTI HCD FTMS 0 0 0 12558 744958.875 0.017366791569931796 45 -1.2002182006835938 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 1 SP{M(Oxidation (M))|F}STSVSW 9 -1 77.024 0 0 6.807 0 0 135.08865472759527 0 135.08865472759527 0 60.56479076621045 0 0 0 2.774227503252014 0 1.6479400086720375 0 SP{M(Oxidation (M))|F}STSVSW 6.807 - 4094 + NaN NaN 346467.1 NaN 9699 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12561 57.37 NaN 944790 35 0 222100 0.262 + 10548 IPIGIDKAL 9 65 470.29731574195284 938.5800785507057 2 470.2973327636719 MULTI HCD FTMS 0 0 0 12558 622572.125 0.6033349046892771 3 -0.08860015869140625 3 Unmodified _IPIGIDKAL_ ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5 96.36657018975838 0.004359138328518304 1 {I|L}P{I|L}G{I|L}DKA{I|L} 9 0 + 112.74 0 0 12.012 12.012 97.402 0 0 0 73.41006536512872 8.256886463274284 8.256886463274284 20.07007180900061 0 3.079689690656103 1.6989700043360187 1.5114393726401687 0 + + {I|L}P{I|L}G{I|L}DKA{I|L};[{I|L}P]{I|L}G{I|L}DKA{I|L};[{I|L}P]G{I|L}{I|L}DKA{I|L};[{I|L}P]{I|L}G{I|L}[NS]{I|L}{I|L};[{I|L}P]G{I|L}{I|L}[NS]{I|L}{I|L};[{I|L}P]{I|L}G{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}A{I|L};[{I|L}P]{I|L}G{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}{I|L};[{I|L}P]G{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}A{I|L};[{I|L}P]G{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}G{I|L}P{I|L}{I|L} 12.012;9.8738;9.3411;8.1119;7.5792;7.3992;7.2585;6.8665;6.7257;3.3953 +;+;-;-;-;-;-;-;-;- + 396 + NaN NaN 225473.3 NaN 9700 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12562 57.373 NaN 737910 35 0 62188 0.261 + 1754 CLGSVGRGLCL 11 83 539.2830073671233 NaN 0 539.2720336914062 PEAK HCD FTMS 0 0 0 12558 14142.53515625 0.5957238399845198 -2 0.049045562744140625 4 Unmodified _CLGSVGRGLCL_ ENST00000567589.1_1_16:720997-721204:+|nuORF;ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF 22.736283301280096 0.2352529050846619 1 Y{I|L}E[{I|L}A]HN 7 9 31.654 0 0 2.9403 0 0 71.06329035944641 162.05640588931877 233.1196962487652 0 0 0 0 0 0 0 0.7302046884880937 0.5891368308784531 Y{I|L}E[{I|L}A]HN 2.9403 - 229 + NaN NaN 196785.5 NaN 9701 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12563 57.376 NaN 1025400 35 0 111010 0.261 + 19454 NPSVREFVL 9 96 530.7929472343349 1059.5713415354696 2 530.793212890625 MULTI HCD FTMS 0 0 0 12558 448447.96875 0.01713825726350875 31 -0.8717460632324219 5 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 63.227496030279354 0.01306643085373406 1 NE{M(Oxidation (M))|F}V{I|L} 5 4 47.703 0 0 4.5021 0 0 439.25413966135017 0 439.25413966135017 0 9.312412373755876 0 0 0 0.8252574989159953 0 0 1.086696871556164 NE{M(Oxidation (M))|F}V{I|L} 4.5021 - 1907 NaN NaN 242514.8 NaN 9702 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12564 57.38 NaN 1020100 35 0 230780 0.261 -1 HFDMAVYL 8 67 506.23375482749594 1010.4529567217919 2 506.2337951660156 MULTI HCD FTMS 0 0 0 12558 489126.3125 0.8762497105674133 -4 0.108001708984375 6 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 19.438996006549623 0.45076845602799126 1 VY{I|L} 3 -1 36.198 0 0 3.5823 0 0 617.227115877189 0 617.227115877189 0 30.713337517843655 0 0 0 1 0 0 0 VY{I|L} 3.5823 + + 30 NaN NaN 237947.9 NaN 9703 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12565 57.383 NaN 676440 35 0 76972 0.261 + 25294 SAYEFYHAL 9 80 550.7560969661376 1099.4976409990752 2 550.7559814453125 MULTI HCD FTMS 0 0 0 12558 325268.90625 0.07482701213150846 11 -0.30425262451171875 7 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 100.37149154755038 0.004254194004462789 1 [YE]AS{M(Oxidation (M))|F}YHA{I|L} 9 4 + 84.065 0 0 7.6457 7.6457 86.095 0 0 0 0.26802492411967194 14.973024840566467 0.26802492411967194 0.26802492411967194 0 1.9247425010840047 1.3010299956639813 1.0994850021680094 0 [YE]AS{M(Oxidation (M))|F}YHA{I|L};{[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}T]DS{M(Oxidation (M))|F}YHA{I|L};[YE]{M(Oxidation (M))|F}{[SA]|[TG]}YHA{I|L};{[SA]|[TG]}YY[{M(Oxidation (M))|F}E]HA{I|L};[{M(Oxidation (M))|F}E]Y{[SA]|[TG]}YHA{I|L};[YT]GY[{M(Oxidation (M))|F}E]HA{I|L};[HA]{[QC]|[C(Carbamidomethyl (C))A]}[PS]HHA{I|L} 7.6457;7.6214;6.8047;6.3023;5.7891;4.8975;4.0506;3.5541;3.2339;0.87085 -;+;-;-;-;-;-;-;-;- + 1389 NaN NaN 179516.1 NaN 9704 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12566 57.386 NaN 201240 35 0 10515 0.261 + 31655 VYKAFVMETF 10 60 625.8099156559057 1249.6052783786113 2 626.3107299804688 MULTI HCD FTMS 0 0 0 12558 93065.125 0.42492634984149896 -6 0.163787841796875 8 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 63.227496030279354 0.029684053017782965 1 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 96.407 0 0 7.715 7.715 96.587 0 0 0 24.25968732272281 66.74147241287606 24.25968732272281 96.40723485800656 0 2.7302046884880937 1.6989700043360187 0 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 7.715 + + 172 NaN NaN 114267.5 NaN 9705 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12567 57.39 NaN 282100 35 0 21090 0.264 + 15807 LPHTDFTL 8 58 472.24781114897854 942.4810693647571 2 472.24755859375 MULTI HCD FTMS 0 0 0 12558 87217.9375 0.031096901208937558 23 -0.6522445678710938 9 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 24.67388899826682 0.4122521268485776 1 [{I|L}P]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}MEP 7 5 29.001 0 0 3.0771 0 0 0 128.0718896723304 128.0718896723304 -0.03968976717985129 0 -0.03968976717985129 0 0 0 2 0.3807196863200844 0 [{I|L}P]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}MEP 3.0771 - 133 NaN NaN 137809.1 NaN 9706 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12568 57.393 NaN 174300 35 0 22147 0.261 + -1 YIVDEEGHEM 10 51 619.25698308477 1236.49941323634 2 619.275634765625 MULTI HCD FTMS 0 0 0 12558 43390.80078125 1 0 0 10 Oxidation (M) _YIVDEEGHEM(Oxidation (M))_ REV__ENSG00000026751|ENST00000368043|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-3|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7 6.723162845929126 0.4397169348982109 1 EE{M(Oxidation (M))|F} 3 -1 24.693 0 0 1.997 0 0 813.3614369123062 0 813.3614369123062 0 5.228787452803374 0 0 0 0 0 0 0 EE{M(Oxidation (M))|F} 1.997 - 40 NaN NaN 111369 NaN 9707 2859 12558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12570 57.398 NaN 860220 35 0 77396 0.327 + 13206 KYLVLANML 9 84 540.8096708295093 1079.6047887258185 2 540.8096313476562 MULTI HCD FTMS 0 0 0 12569 331191.5625 0.7355401302385597 2 -0.052402496337890625 1 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 111.28704002717404 0.0027322905094575235 1 [YK]{I|L}V{I|L}AN{M(Oxidation (M))|F}{I|L} 9 0 + 81.916 0 0 7.5876 7.5876 90.807 0 0 0 3.65279269351241 53.94734048120206 3.65279269351241 9.208187539523749 0 2.6989700043360187 0 0 0.7302046884880937 + + [YK]{I|L}V{I|L}AN{M(Oxidation (M))|F}{I|L};[YK]{I|L}V{I|L}AGG{M(Oxidation (M))|F}{I|L};[YK]{I|L}V{I|L}A[MD]K;[YK]{I|L}V{I|L}C[QT]{I|L};[YK]{I|L}V{I|L}C[DV]K;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}A{I|L}{I|L}[YK]V{I|L} 7.5876;6.7347;4.3427;4.2931;3.3219;1.9088 +;-;-;-;-;- + 1252 NaN NaN 205664.5 NaN 9708 2860 12569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12571 57.402 NaN 627050 35 0 54420 0.261 + 1373 AYPHNLMTF 9 91 547.2601473981192 1092.5057418630383 2 547.2603759765625 MULTI HCD FTMS 0 0 0 12569 287650.28125 0.9080395773390051 2 -0.052402496337890625 2 Unmodified _AYPHNLMTF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 100.37149154755038 0.004254194004462789 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}MT{M(Oxidation (M))|F} 9 2 + 82.875 0 0 7.5858 7.5858 93.056 0 0 0 26.010723315171845 65.25072226357213 26.010723315171845 14.837717472008237 0 1.4247425010840047 2 0.7134679910804405 0.5629529932484498 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVVC(Carbamidomethyl (C))T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}YC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVV[CG]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVV{[CA]|SS}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}YC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[QP][HM]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 7.5858;6.2277;6.0149;5.6471;5.2894;5.1721;4.5533;4.4465;3.4421;2.9023 -;-;-;-;-;-;-;-;-;- 1263 NaN NaN 170532.7 NaN 9709 2860 12569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12572 57.406 NaN 313610 35 0 18552 0.261 + 35455 YYEYNHDLF 9 61 632.2696861215486 1262.524819309897 2 632.269775390625 MULTI HCD FTMS 0 0 0 12569 121849.53125 0.17191659790769923 9 -0.23850250244140625 3 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 31.26834338654808 0.10542797264966089 1 YYE{[QD]|[EN]|[WG]|[KD]|[RS]}VY{[{M(Oxidation (M))|F}H]|[RQ]} 9 4 + 48.605 0 0 3.8498 3.8498 79.9 0 0 0 0.45757490560674796 0.45757490560674796 0.45757490560674796 0.45757490560674796 0 0.6505149978319906 2 0.3494850021680094 0.3252574989159953 YYE{[QD]|[EN]|[WG]|[KD]|[RS]}VY{[{M(Oxidation (M))|F}H]|[RQ]};[YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F};YYEASNW[PS]{M(Oxidation (M))|F};YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};[YN]WTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYWW{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YYWWV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YYE{[HG]|PP}[HQ]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YYEASGGW[PS]{M(Oxidation (M))|F};[WY]WYV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.8498;3.8136;3.4852;3.4433;3.3367;2.8415;2.8415;2.7617;2.7593;2.09 -;-;-;-;-;-;-;-;-;- 479 + NaN NaN 127202.1 NaN 9710 2860 12569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12573 57.409 NaN 485120 35 0 150330 0.264 -1 0 58 432.28015791670737 431.2728814501074 1 432.2802429199219 MULTI HCD FTMS 0 0 0 12569 132116.53125 0.000889254625470472 109 -2.8713836669921875 4 NaN NaN 1 {I|L} 1 -1 14.604 0 0 3.3863 0 0 300.17851912276205 0 300.17851912276205 0 0.6246936830414995 0 0 0 0 0 0 0 {I|L} 3.3863 - 3 + NaN NaN 154553.2 NaN 9711 2860 12569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12574 57.413 NaN 475790 35 0 22740 0.261 + 18052 MLSPQEDPK 9 81 522.7555592384234 NaN 0 522.7721557617188 PEAK HCD FTMS 0 0 0 12569 7716.68798828125 0.9595536713130145 -1 0.036197662353515625 5 Unmodified _MLSPQEDPK_ REV__ENSG00000083444|ENST00000196061|PLOD1;REV__ENST00000481933.1_1_1:12032919-12034862:+|nuORF;REV__nc|ENSG00000083444|Q02809-2|PLOD1 21.74664581756881 0.17567436591797916 1 SV{I|L}E 4 -1 25.6 0 0 2.4533 0 0 131.04520238954677 481.2027709094553 612.2479732990021 0 0 0 0 0 0 0 0.8661764699893073 0 SV{I|L}E 2.4533 - 496 + NaN NaN 157821.8 NaN 9712 2860 12569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12575 57.416 NaN 64984 35 0 7845.2 0.261 + -1 ALPWMMVT 8 39 482.7363586425781 NaN 0 482.7363586425781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _ALPWMM(Oxidation (M))VT_ REV__ENSG00000141699|ENST00000309428|RETREG3;REV__nc|ENSG00000141699|Q86VR2-2|RETREG3 5.230669730166228 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 8.9794 0 0 0.932 0 0 598.2961509748063 215.10346399478752 813.3996149695938 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.932 + + 5 + NaN NaN 88711.2 NaN 9713 2860 12569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12577 57.421 NaN 1267300 35 0 162410 0.327 + 18782 NADPIAKYL 9 107 502.77427923256914 1003.5340055319383 2 502.77435302734375 MULTI HCD FTMS 0 0 0 12576 513744.125 0.8774211550154052 1 -0.0294647216796875 1 Unmodified _NADPIAKYL_ ENSG00000172716|ENST00000685675|SLFN11 70.33199760932243 0.0089807860198535 1 {[QG]|[NA]}DP{I|L}AKY{I|L} 9 0 + 72.728 0 0 7.2472 7.2472 91.226 0 0 0 32.61870520051601 35.392105396193465 32.61870520051601 9.890139315225667 0 1.5924778212679485 1.5228787452803376 0.23965182871044374 1.2856668758921828 + + {[QG]|[NA]}DP{I|L}AKY{I|L};{[QG]|[NA]}DP{I|L}AYK{I|L};{[QG]|[NA]}V[EP]AKY{I|L};{[QG]|[NA]}DP{I|L}AY{I|L}K;{[QG]|[NA]}V[EP]AYK{I|L};{[QG]|[NA]}DP{I|L}{I|L}YAK;{[QG]|[NA]}V[EP]AY{I|L}K;[YV]KVVGN[EP];{[QG]|[NA]}VV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]{I|L};{[QG]|[NA]}VV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VDK 7.2472;6.2617;5.7698;5.2341;4.7842;3.9697;3.7566;3.0435;2.9785;2.8229 +;-;-;-;-;-;-;-;-;- + 535 NaN NaN 273966.3 NaN 9714 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12578 57.425 NaN 622630 35 0 55970 0.261 + 19963 NYGKISYTF 9 88 546.7716080954184 1091.5286632576367 2 547.2601928710938 MULTI HCD FTMS 0 0 0 12576 14900.580078125 0.38782475525768084 -4 0.10818099975585938 2 Unmodified _NYGKISYTF_ ENSG00000120327|ENST00000239449|PCDHB14;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 21.74664581756881 0.17247014374749275 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}YSK 9 7 + 63.013 0 0 5.7729 5.7729 87.596 0 0 0 10.92232767701148 33.85129721308889 10.92232767701148 9.208187539523749 0 0 2 1.2614393726401687 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}YSK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}YSK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]AYSK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}[KC]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}V[KS]YSK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}[KC]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}YAYSK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]A[KC]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAVVYP{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[QP][HD]K 5.7729;4.9293;4.8405;4.43;3.6175;3.5864;3.5287;3.4977;3.2392;2.8158 -;-;-;-;-;-;-;-;-;- 1562 NaN NaN 183805.1 NaN 9715 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12579 57.429 NaN 539670 35 0 46592 0.261 + 7940 GDTWQSVVSW 10 91 582.7692560816736 1163.523959230147 2 582.7698974609375 MULTI HCD FTMS 0 0 0 12576 261055.671875 0.027772553618853734 47 -1.249267578125 3 Unmodified _GDTWQSVVSW_ REV__ENSG00000171596|ENST00000305141|NMUR1 32.78568957990786 0.20801173326193015 1 SVSTYVSW 8 -1 72.988 0 0 6.273 0 0 236.07826821651196 0 236.07826821651196 0 61.33285157489162 0 0 0 2.278659694992122 0 1.079689690656103 0 SVSTYVSW 6.273 - 1889 + NaN NaN 168780 NaN 9716 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12580 57.432 NaN 510720 35 0 87453 0.261 + 8419 GYSEHFVEF 9 75 557.7455165912979 1113.4764802493958 2 557.7457885742188 MULTI HCD FTMS 0 0 0 12576 262654.21875 0.05609548161516939 16 -0.4486541748046875 4 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 60.38955033654506 0.017036522530421875 1 [YG][PG]AC(Carbamidomethyl (C))[{I|L}T]E 9 7 45.018 0 0 4.043 0 0 0 162.05600916080314 162.05600916080314 24.048538921948776 0 0 0 0 1.613982988912431 1.5228787452803376 1.1307196863200843 0 [YG][PG]AC(Carbamidomethyl (C))[{I|L}T]E 4.043 - 182 + NaN NaN 166927.4 NaN 9717 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12581 57.435 NaN 456100 35 0 36428 0.261 + 1864 CVSSFFAISW 10 76 573.7657539071055 1145.5169548810109 2 573.7647094726562 MULTI HCD FTMS 0 0 0 12576 146802.734375 0.021401632773482587 47 -1.249267578125 5 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 19.256988751693697 0.33098864134661865 1 HSVS[YT]VSW 9 7 53.326 0 0 4.6552 0 0 81.03640036326995 0 81.03640036326995 0 45.8783628755652 0 0 0 2.1237125054200234 0 0 0 HSVS[YT]VSW 4.6552 - 795 + NaN NaN 151683.5 NaN 9718 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12582 57.439 NaN 212510 35 0 19433 0.261 + 18603 MVTSLEESL 9 55 512.7465403512367 1023.4785277692735 2 512.7469482421875 MULTI HCD FTMS 0 0 0 12576 79930.9609375 0.6636574552012409 4 -0.10740280151367188 6 Oxidation (M) _M(Oxidation (M))VTSLEESL_ ENSG00000047410|ENST00000367478|TPR 71.13359017698441 0.008721403657255008 1 ETVEES{I|L} 7 4 56.38 0 0 5.5086 0 0 218.108690330275 0 218.108690330275 0 47.51811972993799 0 0 0 1.3807196863200843 0 1.066901560044258 0 ETVEES{I|L} 5.5086 - 189 NaN NaN 126531 NaN 9719 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12583 57.442 NaN 361450 35 0 26372 0.261 + 22202 QLPDKWQHDLF 11 67 476.2418907157158 1425.7038427473474 3 476.2417907714844 MULTI HCD FTMS 0 0 0 12576 55543.203125 0.5039444232346921 -3 0.07204437255859375 7 Unmodified _QLPDKWQHDLF_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 30.43146612281011 0.1985744305751247 1 {[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M[WE]{I|L}Q{I|L}{M(Oxidation (M))|F} 11 6 {[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M[WE]{I|L}Q + + 22.391 8.8461 0.77087 1.5705 1.5705 58.86 0 0 0 0 6.404243831634986 0 0 0 0.3807196863200844 0 0 0 {[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M[WE]{I|L}Q{I|L}{M(Oxidation (M))|F} 1.5705 - 98 + NaN NaN 136441.4 NaN 9720 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12584 57.445 NaN 79197 35 0 5296.8 0.261 + -1 RCCIVAKCSL 10 46 633.8069866554331 1265.599420377666 2 633.8045654296875 MULTI HCD FTMS 0 0 0 12576 46738.81640625 0.07797015786166349 34 -0.8545188903808594 8 3 Carbamidomethyl (C) _RC(Carbamidomethyl (C))C(Carbamidomethyl (C))IVAKC(Carbamidomethyl (C))SL_ REV__ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant;REV__ENSG00000124406|ENST00000381668|ATP8A1;REV__ENSG00000132932|ENST00000381655|ATP8A2;REV__ENST00000491840.1_1_13:26141407-26501380:+|nuORF;REV__nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2 7.101721422024254 0.4377131641736035 1 S{I|L} 2 -1 25.217 0 0 1.9925 0 0 1047.4727820648757 0 1047.4727820648757 0 22.11758134947864 0 0 0 0.4247425010840047 0 0 0 S{I|L} 1.9925 + + 17 NaN NaN 117732.1 NaN 9721 2861 12576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12586 57.45 NaN 693960 35 0 105570 0.327 + 22357 QPNGGEPFL 9 64 479.73509128757496 957.4556296419499 2 479.735107421875 MULTI HCD FTMS 0 0 0 12585 360743.6875 0.37368147434552806 6 -0.16316986083984375 1 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 46.020951573049366 0.037705236580089195 1 P{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.7806 0 0 582.239823758989 0 582.239823758989 0 6.812412373755876 0 0 0 1 0 0 0 + P{M(Oxidation (M))|F}{I|L} 3.7806 + + 138 NaN NaN 195108.2 NaN 9722 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12587 57.455 NaN 1136700 35 0 142730 0.261 + 28014 TFTFSHATF 9 103 529.7509545642309 1057.4873561952618 2 529.7511596679688 MULTI HCD FTMS 0 0 0 12585 598646.4375 0.7570778473897004 -1 0.0294647216796875 2 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 164.5152109175784 6.8106583686994766E-09 1 TAHS{M(Oxidation (M))|F}TET 8 7 83.16 0 0 7.8639 0 0 165.07916457343907 0 165.07916457343907 0 50.022372859846186 0 0 0 2.4802046884880937 0 2.004432191740108 0 TAHS{M(Oxidation (M))|F}TET 7.8639 - 5926 NaN NaN 255470.9 NaN 9723 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12588 57.458 NaN 721700 35 0 287270 0.263 + -1 WSIFKCRPK 9 55 407.88994171490526 1220.6479957449158 3 407.89019775390625 MULTI HCD FTMS 0 0 0 12585 159491.328125 0.8372187079671088 -6 0.16714096069335938 3 Carbamidomethyl (C) _WSIFKC(Carbamidomethyl (C))RPK_ REV__ENST00000261254.7_1_12:4412013-4412226:+|nuORF 4.897010918128616 0.31389406404703984 1 S 1 -1 15.242 0 0 1.2487 0 0 947.5365860138214 183.05637537174064 1130.5929613855621 0 0 0 0 0 0.5 0 0.3252574989159953 0 S 1.2487 + + 7 + NaN NaN 189251.5 NaN 9724 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12589 57.462 NaN 498210 35 0 43162 0.261 + 27561 TADPLDYRL 9 85 532.2747190099266 1062.534885086653 2 532.2745361328125 MULTI HCD FTMS 0 0 0 12585 125955.7890625 0.07831486776268763 11 -0.3043708801269531 4 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 38.61474834105838 0.07170385841135779 1 [TA]DP{I|L}DY[R{I|L}] 9 0 + 53.45 0 0 5.0304 5.0304 87.448 0 0 0 36.46001825324576 4.762036441594191 4.762036441594191 10.457574905606748 0 2.0138793319624577 1.0969100130080565 0 0 + + [TA]DP{I|L}DY[R{I|L}];[{I|L}T][HV]D{I|L}PD[PG];[H{I|L}]{[TV]|[{I|L}S]}D{I|L}PD[PG];{[WT]|[RM]}P{I|L}[W{M(Oxidation (M))|F}][{I|L}T];{[WT]|[RM]}P[W{M(Oxidation (M))|F}]{I|L}[{I|L}T] 5.0304;4.0462;2.5638;2.2852;2.2254 +;-;-;-;- + 429 + NaN NaN 156977.9 NaN 9725 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12590 57.465 NaN 248210 35 0 13721 0.261 + 32560 WIMGVMHSMS 10 70 589.7601057528578 1177.5056585725156 2 589.7596435546875 MULTI HCD FTMS 0 0 0 12585 62095.1875 0.02504863128975858 48 -1.2723121643066406 5 Unmodified _WIMGVMHSMS_ ENSG00000165762|ENST00000641885|OR4K2 14.838274106304384 0.3723198072575719 1 S{[MS]|[{M(Oxidation (M))|F}A]} 3 7 21.739 0 0 1.8462 0 0 854.39486252935 0 854.39486252935 0 -0.36175320500660746 -0.36175320500660746 0 0 1 0 0.8807196863200843 0 + S{[MS]|[{M(Oxidation (M))|F}A]} 1.8462 + + 204 + NaN NaN 120811.6 NaN 9726 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12591 57.468 NaN 117070 35 0 22846 0.264 + 8025 GGFFHCLP 8 43 439.2046331278129 876.3947133224258 2 439.2053527832031 MULTI HCD FTMS 0 0 0 12585 29506.42578125 0.4456999907480748 7 -0.18610000610351562 6 Unmodified _GGFFHCLP_ REV__ENST00000271764.6_2_1:206778821-206782766:-|nuORF 11.114462752807354 0.5120171699125776 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.7668 0 0 711.3156860780883 0 711.3156860780883 0 0.7479428389387266 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7668 + + 27 + NaN NaN 117576.9 NaN 9727 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12592 57.474 NaN 181040 35 0 17926 0.261 + 19101 NFDTNNINKF 10 58 613.79595161781 NaN 0 613.79638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NFDTNNINKF_ REV__tr|U7SH86|U7SH86_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02197PE=4SV=1 5.047519993296601 0.3358643114838419 1 M 1 -1 5.4846 0 0 0.44751 0 0 649.2173824861571 442.29612146549067 1091.5135039516479 0 0 0 0 0 0 0 0 0 M 0.44751 - 14 + NaN NaN 111191.8 NaN 9728 2862 12585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12594 57.479 NaN 754620 35 0 138120 0.327 + 5702 FPAGYMYPSM 10 89 598.2433088441734 1194.4720647551467 2 598.2435302734375 MULTI HCD FTMS 0 0 0 12593 308751.65625 0.8409733107315875 -13 0.3664741516113281 1 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 125.62461146993168 2.8380270204069364E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 0 + 74.862 0 0 6.2673 6.2673 86.049 0 0 0 10.80198135264581 57.10245264591222 10.80198135264581 5.568109453757657 0 2.353917193908117 1.2218487496163564 0.75 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[YC]|[HE]}T[PA]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}[MD]T{M(Oxidation (M))|F} 6.2673;5.8012;4.9786;4.4093;4.3463;4.0692;4.0275;3.8411;3.8028;3.2516 +;-;-;-;-;-;-;-;-;- + 1014 NaN NaN 208713 NaN 9729 2863 12593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12595 57.484 NaN 775130 35 0 89982 0.262 + 16204 LPVQPENAL 9 89 490.7742814190735 979.534009904947 2 490.77435302734375 MULTI HCD FTMS 0 0 0 12593 187333.609375 0.4575427350492585 3 -0.07867813110351562 2 Unmodified _LPVQPENAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 53.832793166522166 0.026208976789938845 1 [{I|L}P]VQ[EP]NA{I|L} 9 0 + 61.679 0 0 6.2968 6.2968 86.62 0 0 0 24.13734275855269 22.98455006504028 22.98455006504028 6.817496819840656 0 1.2614393726401687 1.6989700043360187 0.2742275032520141 0.25 + + [{I|L}P]VQ[EP]NA{I|L};[{I|L}P]{I|L}N[EP]NA{I|L};[{I|L}P]VQ[EP]GGA{I|L};[{I|L}P]V[AG][EP]NA{I|L};[{I|L}P]N{I|L}[EP]NA{I|L};[{I|L}P]{I|L}N[EP]GGA{I|L};[{I|L}P]{I|L}GG[EP]NA{I|L};[{I|L}P]GG{I|L}[EP]NA{I|L};[{I|L}P]N{I|L}[EP]GGA{I|L};[{I|L}P]VQ[DV]V[NP] 6.2968;5.6008;5.3567;5.3567;4.9339;4.6607;4.6607;3.9939;3.9939;3.6454 +;-;-;-;-;-;-;-;-;- + 1263 NaN NaN 200329.7 NaN 9730 2863 12593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12596 57.487 NaN 223940 35 0 27552 0.261 + 6280 FPFHSAPAL 9 58 493.7582039032258 985.5018548732517 2 493.75848388671875 MULTI HCD FTMS 0 0 0 12593 121541.5703125 0.14788068171578125 10 -0.2756156921386719 3 Unmodified _FPFHSAPAL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 42.09456458481378 0.05572955244001856 1 SAPA{I|L} 5 4 49.24 0 0 4.9965 0 0 528.2474842755875 0 528.2474842755875 0 25.939491060230253 0 0 0 0.9247425010840047 0 0.805462187404089 0 + SAPA{I|L} 4.9965 + + 58 NaN NaN 109853.7 NaN 9731 2863 12593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12597 57.49 NaN 201410 35 0 23678 0.261 + 4627 EYMEHVYLI 9 53 606.7841215460777 NaN 0 606.7842407226562 PEAK HCD FTMS 0 0 0 12593 136162.140625 0.16025742547892352 10 -0.2756156921386719 4 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 46.92087301778293 0.05607980621763639 1 {I|L}Y 2 8 14.068 0 0 1.1612 0 0 131.09567941187362 801.2887056940061 932.3843851058798 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L}Y 1.1612 - 22 + NaN NaN 119016.6 NaN 9732 2863 12593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12598 57.494 NaN 323130 35 0 60648 0.261 + 34690 YPVDLGDKF 9 68 527.2662717961327 1052.5179906590654 2 527.265869140625 MULTI HCD FTMS 0 0 0 12593 95667.84375 0.07461562377341516 12 -0.3380889892578125 5 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 67.83816525789305 0.009787749748478139 1 YPVD{I|L}[DG]K{M(Oxidation (M))|F} 9 0 + 86.002 0 0 8.171 8.171 94.415 0 0 0 59.80381264341851 14.09256854528806 14.09256854528806 17.33410649039925 0 2.610924374808178 1.6989700043360187 0.6861818737241735 0 + + YPVD{I|L}[DG]K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}[DG]K{M(Oxidation (M))|F} 8.171;6.5241 +;+ + 236 + NaN NaN 125693.1 NaN 9733 2863 12593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12599 57.497 NaN 177130 35 0 17147 0.261 + 21613 PYPFTHHWQF 10 57 453.88038074765984 1358.6193128431796 3 453.88031005859375 MULTI HCD FTMS 0 0 0 12593 46685.97265625 0.16369731409282753 13 -0.3642921447753906 6 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 11.517880264261096 0.4033776509493788 1 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.6185 0 0 1193.5401330109514 0 1193.5401330109514 0 16.21469385014791 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6185 + + 31 + NaN NaN 108907.1 NaN 9734 2863 12593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12601 57.502 NaN 1845700 35 0 241410 0.327 + 9066 HPEYGEVIQL 10 87 592.8010125390391 1183.5874721448781 2 592.8011474609375 MULTI HCD FTMS 0 0 0 12600 1008903.5 0.5676214148768449 5 -0.13443756103515625 1 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 89.40071534611396 0.0010484101455745577 1 CE{[MS]|[{M(Oxidation (M))|F}A]}MV{I|L}[Q{I|L}] 9 5 47.237 0 0 3.991 0 0 131.09422907791946 0 131.09422907791946 0 32.02082667510629 0 0 0 2.113982988912431 0 0.4247425010840047 1.1549471895720984 CE{[MS]|[{M(Oxidation (M))|F}A]}MV{I|L}[Q{I|L}] 3.991 - 255 + NaN NaN 364070.9 NaN 9735 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12602 57.506 NaN 1414200 35 0 231090 0.261 -1 DPRNATSVCI 10 92 566.7738872279571 1131.533221522714 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12600 648200.9375 0.015111130231178044 50 -1.3321037292480469 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 1 P{M(Oxidation (M))|F}STSVSW 8 -1 83.327 0 0 7.3641 0 0 222.09987310938124 0 222.09987310938124 0 65.12217690479625 0 0 0 2.4247425010840047 0 1.4489700043360187 0 P{M(Oxidation (M))|F}STSVSW 7.3641 - 3602 + NaN NaN 303726.6 NaN 9736 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12603 57.51 NaN 816910 35 0 203740 0.261 -1 WSVDPLDRAM 10 80 603.2873655165023 NaN 0 603.2997436523438 PEAK HCD FTMS 0 0 0 12600 28180.611328125 0.4934464538546248 5 -0.13443756103515625 3 Oxidation (M) _WSVDPLDRAM(Oxidation (M))_ ENSG00000148180|ENST00000432226|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396|GSN 21.590151480376914 0.2677540384105019 1 PPQ{M(Oxidation (M))|F} 4 -1 18.817 0 0 1.5622 0 0 165.0557607863912 567.2583712213499 732.3141320077411 0 0 0 0 0 0.3807196863200844 0 0 0.2614393726401688 PPQ{M(Oxidation (M))|F} 1.5622 - 209 + NaN NaN 203265.8 NaN 9737 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12604 57.513 NaN 650390 35 0 71739 0.262 + 10565 IPISLHTSL 9 92 490.79214519216345 979.5697374511269 2 490.7923583984375 MULTI HCD FTMS 0 0 0 12600 300046.9375 0.9148274524211695 1 -0.026275634765625 4 Unmodified _IPISLHTSL_ nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B 120.45040980043947 0.0012363446172167195 1 {I|L}P{I|L}S{I|L}HTS{I|L} 9 0 + 83.954 0 0 8.5705 8.5705 89.826 0 0 0 42.790936806080644 9.678477052876815 9.678477052876815 5.0438696215375245 0 1.8411290632962718 1.6989700043360187 1.591129063296272 0 + + {I|L}P{I|L}S{I|L}HTS{I|L};{I|L}P{I|L}H[{I|L}T]SS{I|L};{I|L}P{I|L}H{[TV]|[{I|L}S]}TS{I|L};{I|L}P{I|L}S{I|L}[QA]A[PA];[{I|L}P]{I|L}NN[{I|L}P]S{I|L};[{I|L}P]{I|L}NNS{I|L}P{I|L};{I|L}P{I|L}[TP]QQA{I|L};[{I|L}P]VQN[{I|L}P]S{I|L};[{I|L}P]VQNS{I|L}P{I|L};[{I|L}P]N[SG]V{I|L}AP{I|L} 8.5705;8.0556;7.4188;5.9266;5.5327;5.4631;5.382;5.3296;5.26;4.8379 +;-;-;-;-;-;-;-;-;- + 1458 + NaN NaN 186682.5 NaN 9738 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12605 57.517 NaN 176910 35 0 40001 0.261 + 10549 IPIGIDKAL 9 43 470.29731574195284 938.5800785507057 2 470.2972717285156 MULTI HCD FTMS 0 0 0 12600 99970.4453125 0.09688140003756475 8 -0.22646713256835938 5 Unmodified _IPIGIDKAL_ ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5 63.960520009940105 0.0120409805053046 1 {I|L}P{I|L}G{I|L} 5 4 71.498 0 0 7.6177 0 0 0 442.2308748834594 442.2308748834594 58.667053245199625 0 0 0 0 1.805462187404089 1.6989700043360187 0 0 + {I|L}P{I|L}G{I|L} 7.6177 + + 37 + NaN NaN 109622.4 NaN 9739 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12606 57.52 NaN 398890 35 0 28642 0.261 + 25124 SAGEPPNWTW 10 83 572.7562833170128 NaN 0 572.7561645507812 PEAK HCD FTMS 0 0 0 12600 65963.59375 0.01075197258852759 50 -1.3321037292480469 6 Unmodified _SAGEPPNWTW_ REV__ENSG00000131724|ENST00000371666|IL13RA1;REV__nc|ENSG00000131724|P78552-2|IL13RA1 16.149105407346934 0.31182886977857566 1 KP{M(Oxidation (M))|F}DPGA 7 -1 30.068 0 0 2.6294 0 0 216.05094446430058 212.06763635806877 428.1185808223694 0 0 0 0 0 0.7429928190999391 0 0.6307196863200843 0 KP{M(Oxidation (M))|F}DPGA 2.6294 - 1048 + NaN NaN 153233.6 NaN 9740 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12607 57.523 NaN 47017 35 0 4656.6 0.264 + 25308 SCCSTTCC 8 36 404.1123508080299 NaN 0 404.1911315917969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SCCSTTCC_ ENSG00000198083|ENST00000394008|KRTAP9-9;nc|ENSG00000198083|Q9BYP9-2|KRTAP9-9 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92323.2 NaN 9741 2864 12600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12609 57.528 NaN 1003900 35 0 268830 0.327 -1 HFDMAVYL 8 59 506.23375482749594 1010.4529567217919 2 506.23388671875 MULTI HCD FTMS 0 0 0 12608 550278 0.9858004484917483 2 -0.055736541748046875 1 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 VY{I|L} 3 -1 34.693 0 0 3.4334 0 0 617.2286854474625 0 617.2286854474625 0 20.088643834802156 0 0 0 0.8494850021680094 0 0 0 VY{I|L} 3.4334 + + 16 NaN NaN 248959 NaN 9742 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12610 57.533 NaN 459130 35 0 47396 0.261 + 25295 SAYEFYHAL 9 58 550.7560969661376 1099.4976409990752 2 550.756103515625 MULTI HCD FTMS 0 0 0 12608 136488.375 0.03139868919436524 17 -0.4857063293457031 2 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 78.14939416004806 0.006451203201226903 1 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 67.635 0 0 6.1514 6.1514 87.159 0 0 0 5.4330502818412185 5.4330502818412185 5.4330502818412185 8.750612633917001 0 2.805462187404089 0 0.6549471895720985 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YE]AS{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}T]DS{M(Oxidation (M))|F}YHA{I|L};{[SA]|[TG]}YY[{M(Oxidation (M))|F}E]HA{I|L} 6.1514;5.3555;5.3555;4.7614;2.7807 +;-;-;-;- + 427 NaN NaN 164614.2 NaN 9743 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12611 57.536 NaN 339450 35 0 19099 0.261 + 7180 FSLEKKYY 8 67 539.2830073671233 NaN 0 539.2720336914062 PEAK HCD FTMS 0 0 0 12608 12221.474609375 0.5148033011148404 3 -0.08523178100585938 3 Unmodified _FSLEKKYY_ ENST00000256255.10_2_8:29921247-29921394:-|nuORF 12.531546534597751 0.38822285293237185 1 EH{I|L}AE{I|L} 6 7 15.328 0 0 1.4238 0 0 150.09747816768123 231.07753931217033 381.1750174798516 0 0 0 0 0 0 0 0 0 EH{I|L}AE{I|L} 1.4238 - 77 + NaN NaN 141589.1 NaN 9744 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12612 57.54 NaN 438200 35 0 35513 0.261 + 1865 CVSSFFAISW 10 89 573.7657539071055 1145.5169548810109 2 573.7650146484375 MULTI HCD FTMS 0 0 0 12608 118136.9453125 0.01722259146822598 51 -1.3614768981933594 4 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 25.399314129420986 0.2735354021946395 1 TT[WD]SVSW 8 8 40.728 0 0 3.5555 0 0 165.07795912910314 0 165.07795912910314 0 26.035605054892187 0 0 0 1.2887254899964358 0 0.6237125054200234 0 TT[WD]SVSW 3.5555 - 1037 NaN NaN 167389.8 NaN 9745 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12613 57.543 NaN 340350 35 0 56379 0.261 -1 PDMVNMVVL 9 60 525.2538696990465 1048.493186464893 2 525.2542114257812 MULTI HCD FTMS 0 0 0 12608 99518.3671875 0.3726519885575764 -6 0.16653823852539062 5 2 Oxidation (M) _PDM(Oxidation (M))VNM(Oxidation (M))VVL_ ENSG00000142623|ENST00000375471|PADI1 25.399314129420986 0.14091189997036632 1 SV{I|L} 3 -1 44.693 0 0 4.2626 0 0 731.3000308892629 0 731.3000308892629 0 37.70303756120384 0 0 0 1 0 0.8494850021680094 0 SV{I|L} 4.2626 - 39 NaN NaN 136673.9 NaN 9746 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12614 57.546 NaN 566860 35 0 27465 0.261 + 29668 VASHNRGLVL 10 91 533.3095580693345 1064.6045632054688 2 533.3104248046875 MULTI HCD FTMS 0 0 0 12608 102862.6875 0.9748088944486103 1 -0.0294952392578125 6 Unmodified _VASHNRGLVL_ ENSG00000183090|ENST00000329798|FREM3 29.081581746732265 0.240155558137004 1 T{I|L}{I|L}G{[{M(Oxidation (M))|F}H]|[RQ]}V{M(Oxidation (M))|F} 8 8 36.363 0 0 3.4156 0 0 132.10344273238383 0 132.10344273238383 0 17.1669877129645 0 0 0 0 0 0 0.7742275032520141 T{I|L}{I|L}G{[{M(Oxidation (M))|F}H]|[RQ]}V{M(Oxidation (M))|F} 3.4156 - 463 + NaN NaN 173591.2 NaN 9747 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12615 57.55 NaN 109810 35 0 6135.2 0.261 + 33671 YKGYIWNYGA 10 39 617.796336929346 NaN 0 617.7946166992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YKGYIWNYGA_ ENSG00000180817|ENST00000373232|PPA1 3.2813086475875832 0.33737594360511275 1 QSWE 4 9 23.928 0 0 1.9397 0 0 208.0837239887524 492.25592981510005 700.3396538038525 0 0 0 0 0 0.5 0 0 0 QSWE 1.9397 - 23 + NaN NaN 98427.9 NaN 9748 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12616 57.553 NaN 151830 35 0 17245 0.261 + 1039 AYGHFSYEF 9 67 560.7409098772953 1119.4672668213905 2 560.74072265625 MULTI HCD FTMS 0 0 0 12608 31388.064453125 0.01589148592562412 45 -1.1943740844726562 8 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 15.847184025352803 0.2234401846867398 1 [{M(Oxidation (M))|F}E][NS]{[QG]|[NA]}YE{M(Oxidation (M))|F} 9 6 [{M(Oxidation (M))|F}E][NS]{[QG]|[NA]}Y + + 31.454 -5.195 -0.62943 2.8097 2.8097 59.167 0 0 0 0 15.501852725587815 0 0 0 1 0 0.5 0 [{M(Oxidation (M))|F}E][NS]{[QG]|[NA]}YE{M(Oxidation (M))|F} 2.8097 - 43 + NaN NaN 105768.4 NaN 9749 2865 12608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12618 57.558 NaN 467790 35 0 44041 0.327 + 7941 GDTWQSVVSW 10 91 582.7692560816736 1163.523959230147 2 582.7701416015625 MULTI HCD FTMS 0 0 0 12617 230551.4375 0.02452734358875939 52 -1.3873977661132812 1 Unmodified _GDTWQSVVSW_ REV__ENSG00000171596|ENST00000305141|NMUR1 26.268140514670165 0.2654086933305545 1 SVS[YT]VSW 8 -1 60.967 0 0 5.2399 0 0 236.07795164181488 0 236.07795164181488 0 35.477372199242296 0 0 0 2.579689690656103 0 1.0044321917401078 0 SVS[YT]VSW 5.2399 - 2656 + NaN NaN 157185.8 NaN 9750 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12619 57.562 NaN 136360 35 0 26421 0.261 -1 RMFLNFGKNF 10 43 645.3265927407199 1288.6386325482397 2 645.3272094726562 MULTI HCD FTMS 0 0 0 12617 87573.046875 0.7260573718334031 -1 0.0294952392578125 2 Oxidation (M) _RM(Oxidation (M))FLNFGKNF_ ENST00000486169.5_1_3:62309666-62309765:+|nuORF 3.2813086475875832 0.45793521633868084 1 AVN 3 -1 8.6721 0 0 0.67297 0 0 441.1861922179647 560.2717379205686 1001.4579301385334 0 0 0 0 0 0 0 0 0 AVN 0.67297 - 23 + NaN NaN 115193.7 NaN 9751 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12620 57.566 NaN 442040 35 0 67008 0.264 + 31635 VYISNGQVL 9 71 496.7740821863856 991.5336114395712 2 496.77447509765625 MULTI HCD FTMS 0 0 0 12617 126879.9296875 0.6010564637299093 -3 0.07867813110351562 3 Unmodified _VYISNGQVL_ ENSG00000113811|ENST00000495461|SELENOK;ENST00000487571.1_1_3:53922418-53925815:-|nuORF 72.96794272382148 0.008127836904478181 1 [YV]{I|L}SNGQV{I|L} 9 0 + 80.639 0 0 8.1327 8.1327 91.639 0 0 0 15.253312076568903 72.5667531214534 15.253312076568903 9.208187539523749 0 2.3979400086720375 1.3010299956639813 0.3252574989159953 0.805462187404089 + + [YV]{I|L}SNGQV{I|L};[YV]{I|L}SGGGQV{I|L};[YV]S{I|L}NGQV{I|L};[YV]S{I|L}GGGQV{I|L};[YV]{I|L}SNG[AG]V{I|L};[YV]{I|L}SGGG[AG]V{I|L};[YV][KQ]DQV{I|L};[YV][KQ]D[AG]V{I|L};[YV][KQ]G{[DA]|[EG]}V{I|L};[YV][KQ]G[TP]S{I|L} 8.1327;7.204;7.0213;6.0926;5.3176;4.3933;2.5152;1.5811;1.2775;0.51969 +;-;-;-;-;-;-;-;-;- + 524 NaN NaN 147475.3 NaN 9752 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12621 57.569 NaN 158990 35 0 14109 0.261 -1 YVRQQEMN 8 64 555.257312179224 NaN 0 555.239990234375 PEAK HCD FTMS 0 0 0 12617 13175.2421875 0.7932219900103561 4 -0.10821914672851562 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YVRQQEMN_ ENST00000345990.8_2_5:122950868-122950937:+|nuORF 6.723162845929126 0.38822285293237185 1 {I|L}D{M(Oxidation (M))|F}G 4 -1 13.047 0 0 1.177 0 0 164.07894213012906 509.2197970026 673.298739132729 0 0 0 0 0 0 0 0 0 {I|L}D{M(Oxidation (M))|F}G 1.177 - 21 + NaN NaN 103273.6 NaN 9753 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12622 57.572 NaN 268110 35 0 27508 0.261 + 29000 TYDYNFHSF 9 61 597.2486620026949 1192.4827710721897 2 597.24951171875 MULTI HCD FTMS 0 0 0 12617 33232.515625 0.018131264331490586 51 -1.36138916015625 5 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 12.240655878213236 0.2545997876781172 1 [YT]D[PG]M{I|L}Y 8 6 42.172 0 0 3.5365 0 0 0 249.0547274225219 249.0547274225219 8.807196863200843 0 0 0 0 0.7302046884880937 2 0 0 [YT]D[PG]M{I|L}Y 3.5365 - 199 + NaN NaN 131279.7 NaN 9754 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12623 57.576 NaN 76710 35 0 12922 0.262 + 33926 YLQSKSTF 8 46 487.2528610632739 972.4911691933478 2 487.2524719238281 MULTI HCD FTMS 0 0 0 12617 14438.5771484375 0.4036023352593279 2 -0.055736541748046875 6 Unmodified _YLQSKSTF_ REV__ZNF585A|p.H454Y|1|0.35|ENSG00000196967|chr19:37152539-37152539|G/A|missense_variant 9.347437153973935 0.5250182646323369 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.3877 0 0 807.4115315974478 0 807.4115315974478 0 11.901056208558032 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3877 + + 10 + NaN NaN 98374.5 NaN 9755 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12624 57.579 NaN 165910 35 0 17916 0.261 + 10282 IKQEEILF 8 51 510.2921532212614 1018.5697535093228 2 510.28131103515625 MULTI HCD FTMS 0 0 0 12617 23164.576171875 0.7150694222958043 3 -0.07866668701171875 7 Unmodified _IKQEEILF_ REV__ENSG00000109475|ENST00000394667|RPL34;REV__ENST00000407959.1_1_6:5788581-5788740:-|nuORF 6.723162845929126 0.5320176132289695 1 {I|L}{I|L}[HV]{I|L}{M(Oxidation (M))|F}{I|L} 7 -1 31.726 0 0 3.1148 0 0 165.04565627265782 0 165.04565627265782 0 17.746907182741367 0 0 0 0 0 0 0 {I|L}{I|L}[HV]{I|L}{M(Oxidation (M))|F}{I|L} 3.1148 - 23 NaN NaN 103051.9 NaN 9756 2866 12617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12626 57.584 NaN 410000 35 0 37176 0.327 + 31656 VYKAFVMETF 10 75 625.8099156559057 1249.6052783786113 2 625.81005859375 MULTI HCD FTMS 0 0 0 12625 257520.25 1 0 0 1 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 117.76058876431921 4.161225987453182E-05 1 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 110.79 0 0 8.8664 8.8664 96.358 0 0 0 1.3476596023511433 1.3476596023511433 1.3476596023511433 25.11561899423569 0 3.1861818737241734 1.6989700043360187 0.3807196863200844 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}D[YV];[YK]VA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]KA[MD][Y{I|L}]T{M(Oxidation (M))|F};[YK]VA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}D[YV];[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}KYV{M(Oxidation (M))|F};[YV]KE{[MG]|[TS]}[Y{I|L}]T{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[YV]K{M(Oxidation (M))|F};[YV]D{[ES]|[DT]|[{I|L}C]}TKYV{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][VS]K{M(Oxidation (M))|F} 8.8664;6.8565;6.7248;4.984;4.715;4.0377;3.8202;3.7386;3.7193;3.4977 +;-;-;-;-;-;-;-;-;- + 1366 NaN NaN 159050.6 NaN 9757 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12627 57.588 NaN 329670 35 0 20947 0.261 + 29945 VFFQYLEF 8 87 546.7716080954184 1091.5286632576367 2 547.260009765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VFFQYLEF_ REV__ENSG00000139131|ENST00000324868|YARS2 13.50788311687929 0.4944073034352369 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[YG][KP]T 8 -1 22.826 0 0 2.0912 0 0 0 161.0740444952477 161.0740444952477 3.7652606595747606 0 0 0 0 0 2 0.7887254899964358 0.3054621874040891 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[YG][KP]T 2.0912 - 266 NaN NaN 135548.6 NaN 9758 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12628 57.592 NaN 338130 35 0 54899 0.261 + 8420 GYSEHFVEF 9 57 557.7455165912979 1113.4764802493958 2 557.7457275390625 MULTI HCD FTMS 0 0 0 12625 192451.046875 0.04110207790750235 22 -0.6199913024902344 3 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 57.47134341890925 0.0211188941628804 1 {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4 5 39.847 0 0 3.5786 0 0 573.2191639630875 0 573.2191639630875 0 35.867989884173866 0 0 0 0.9247425010840047 0 0.28872548999643577 0 + {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 3.5786 + + 61 NaN NaN 144061.1 NaN 9759 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12629 57.595 NaN 407760 35 0 74994 0.261 + 18783 NADPIAKYL 9 71 502.77427923256914 1003.5340055319383 2 502.77459716796875 MULTI HCD FTMS 0 0 0 12625 102878.140625 0.17570508854582967 7 -0.20023727416992188 4 Unmodified _NADPIAKYL_ ENSG00000172716|ENST00000685675|SLFN11 34.93206674587334 0.08860942999206235 1 {[QG]|[NA]}V{[CP]|[EA]}PKY{I|L} 9 3 + 48.54 0 0 4.8369 4.8369 88.951 0 0 0 12.5655278536194 26.382353118286233 12.5655278536194 19.530162782510473 0 1.274227503252014 1.3979400086720375 0 0.4247425010840047 {[QG]|[NA]}V{[CP]|[EA]}PKY{I|L};{[QG]|[NA]}V[KA][EP]Y{I|L};{[QG]|[NA]}V{[CP]|[EA]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L};{[QG]|[NA]}V[KA][Y{I|L}][EP];{[QG]|[NA]}V[YK][{I|L}A][EP];[YV]KVV[NG][EP] 4.8369;2.8907;2.8802;1.1495;1.025;0.33674 -;-;-;-;-;- 202 NaN NaN 150435.5 NaN 9760 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12630 57.599 NaN 216190 35 0 11071 0.261 + 13207 KYLVLANML 9 66 540.8096708295093 1079.6047887258185 2 540.8101806640625 MULTI HCD FTMS 0 0 0 12625 40507.1328125 0.08996189854473387 9 -0.2593727111816406 5 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 47.748688679222035 0.03472022231463587 1 V{I|L}AN{M(Oxidation (M))|F}{I|L} 6 3 62.81 0 0 5.8179 0 0 404.2436695783219 0 404.2436695783219 0 48.51342204748164 0 0 0 2.079689690656103 0 0 0.3252574989159953 + V{I|L}AN{M(Oxidation (M))|F}{I|L} 5.8179 + + 196 NaN NaN 121098.4 NaN 9761 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12631 57.602 NaN 234410 35 0 13272 0.261 -1 YLSWEKCW 8 68 586.2632375083703 1170.5119220835404 2 586.2623291015625 MULTI HCD FTMS 0 0 0 12625 85871.28125 0.8340976144397413 -2 0.055736541748046875 6 Carbamidomethyl (C) _YLSWEKC(Carbamidomethyl (C))W_ ENST00000409175.5_1_2:160599702-160602296:+|nuORF;ENST00000473749.1_1_2:160599711-160604424:+|nuORF 9.347437153973935 0.5250182646323369 1 V{M(Oxidation (M))|F}SEW 5 -1 35.165 0 0 3.0042 0 0 504.2089393890113 0 504.2089393890113 0 9.643331241078172 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F}SEW 3.0042 - 387 NaN NaN 140003.4 NaN 9762 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12632 57.605 NaN 179790 35 0 21698 0.261 + 21070 PLYSDLHPVSL 11 47 620.8324969524551 1239.6504409717102 2 620.83203125 MULTI HCD FTMS 0 0 0 12625 34938.5 0.6031318939006459 -1 0.026241302490234375 7 Unmodified _PLYSDLHPVSL_ ENST00000515519.5_1_5:148442977-148443214:+|nuORF 7.608950283845883 0.38555039536024605 1 S{I|L} 2 9 21.454 0 0 1.7306 0 0 1021.525825476273 0 1021.525825476273 0 15.969100130080562 0 0 0 0.5 0 0 0 + S{I|L} 1.7306 + + 10 NaN NaN 106732.8 NaN 9763 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12633 57.609 NaN 178810 35 0 36942 0.261 + 32934 YAIDEYYRM 9 56 612.2739243790274 1222.5332958248548 2 612.2737426757812 MULTI HCD FTMS 0 0 0 12625 49125.10546875 0.9507820876547229 1 -0.0294952392578125 8 Unmodified _YAIDEYYRM_ chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1 31.26834338654808 0.10542797264966089 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}HEDVVM 10 5 + 54.843 0 0 4.486 4.486 82.853 0 0 0 15.770374042991051 51.74410632329284 15.770374042991051 5 0 0.5 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}HEDVVM;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}HED{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{M(Oxidation (M))|F}] 4.486;4.077;1.4779 -;-;- 86 NaN NaN 102130.4 NaN 9764 2867 12625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12635 57.614 NaN 1094200 35 0 139750 0.327 + 28015 TFTFSHATF 9 93 529.7509545642309 1057.4873561952618 2 529.7510375976562 MULTI HCD FTMS 0 0 0 12634 465426.5625 0.588601414763264 5 -0.14120101928710938 1 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 149.9946105101851 8.83195450578534E-06 1 ET{M(Oxidation (M))|F}SHAT{M(Oxidation (M))|F} 8 2 81.566 0 0 7.7132 0 0 119.05783681098019 0 119.05783681098019 0 42.34804636597956 0 0 0 2.524227503252014 0 1.8494850021680094 0 ET{M(Oxidation (M))|F}SHAT{M(Oxidation (M))|F} 7.7132 - 5361 + NaN NaN 248346.9 NaN 9765 2868 12634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12636 57.618 NaN 633880 35 0 265940 0.262 -1 SWPRIIMRF 9 58 407.88994171490526 1220.6479957449158 3 407.8903503417969 MULTI HCD FTMS 0 0 0 12634 190501.390625 1 0 0 2 Oxidation (M) _SWPRIIM(Oxidation (M))RF_ ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21 12.240655878213236 0.2545997876781172 1 S 1 -1 15.485 0 0 1.2686 0 0 947.5366084931586 183.05636011295158 1130.5929686061102 0 0 0 0 0 0.5 0 0.3494850021680094 0 S 1.2686 + + 17 + NaN NaN 196277.1 NaN 9766 2868 12634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12637 57.622 NaN 244110 35 0 43131 0.261 + 10839 IVALILSTK 9 56 479.32073034028156 956.6269077473631 2 479.3209228515625 MULTI HCD FTMS 0 0 0 12634 80055.0625 0.6896955378987505 3 -0.08209228515625 3 Unmodified _IVALILSTK_ ENSG00000185883|ENST00000330398|ATP6V0C 39.94969957227396 0.06557568441294001 1 [{I|L}V]A{I|L}{I|L}{I|L} 6 3 58.109 0 0 6.0744 0 0 0 331.16289342535066 331.16289342535066 42.62456261857125 0 0 0 0 2.110924374808178 1.6989700043360187 0 0 + [{I|L}V]A{I|L}{I|L}{I|L} 6.0744 + + 60 NaN NaN 125939.7 NaN 9767 2868 12634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12638 57.625 NaN 259660 35 0 16113 0.261 + 13967 KYSEIQQLL 9 59 561.3138024899254 1120.6130520466506 2 561.314453125 MULTI HCD FTMS 0 0 0 12634 125907.0546875 1 0 0 4 Unmodified _KYSEIQQLL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 40.23920728925047 0.06424668180817725 1 {I|L}QQ{I|L}{I|L} 5 4 51.186 0 0 4.5676 0 0 507.2340089336416 0 507.2340089336416 0 32.60213141451892 0 0 0 1.774227503252014 0 0 0 + {I|L}QQ{I|L}{I|L} 4.5676 + + 233 NaN NaN 135388.9 NaN 9768 2868 12634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12639 57.628 NaN 411950 35 0 125290 0.261 + 23905 RSVEPGQTSSM 11 82 589.7775437770275 1177.540534620855 2 589.7593994140625 MULTI HCD FTMS 0 0 0 12634 100932.7890625 0.5525271255581554 -4 0.11150741577148438 5 Unmodified _RSVEPGQTSSM_ REV__ENST00000596243.5_1_19:50382564-50382609:+|nuORF 5.731851221503515 0.39378271418728467 1 TS{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 14.693 0 0 1.2477 0 0 753.3456288068375 0 753.3456288068375 0 1.5051499783199063 0 0 0 0 0 0 0 TS{[MS]|[{M(Oxidation (M))|F}A]} 1.2477 + + 158 NaN NaN 162697.2 NaN 9769 2868 12634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12640 57.632 NaN 46053 35 0 3561.2 0.261 -1 0 26 616.3004654541048 615.2931889875048 1 616.2882080078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101682 NaN 9770 2868 12634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12642 57.636 NaN 829780 35 0 98905 0.327 + 9067 HPEYGEVIQL 10 82 592.8010125390391 1183.5874721448781 2 592.801025390625 MULTI HCD FTMS 0 0 0 12641 400694.28125 0.22543548997122662 10 -0.2855339050292969 1 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 49.55428908609986 0.07941048486997417 1 V{I|L}Q{I|L} 4 6 45.433 0 0 3.8386 0 0 712.2835955639865 0 712.2835955639865 0 30.28273777167044 0 0 0 1.3494850021680094 0 0 0 + V{I|L}Q{I|L} 3.8386 + + 113 NaN NaN 207594.3 NaN 9771 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12643 57.641 NaN 793830 35 0 147550 0.261 + 33349 YGEYRMETF 9 85 598.2570043750508 NaN 0 598.2435913085938 PEAK HCD FTMS 0 0 0 12641 17195.67578125 1 0 0 2 Unmodified _YGEYRMETF_ REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 19.256988751693697 0.19238547928067054 1 TSP[VS]{M(Oxidation (M))|F}YP 8 -1 38.053 0 0 3.1856 0 0 64.02503695209505 249.0549715631469 313.08000851524196 0 0 0 0 0 0 0 1.2302046884880937 0 TSP[VS]{M(Oxidation (M))|F}YP 3.1856 - 727 + NaN NaN 204398.9 NaN 9772 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12644 57.644 NaN 468560 35 0 43564 0.261 + 5407 FHATTSEVSW 10 72 582.7692560816736 1163.523959230147 2 582.7698364257812 MULTI HCD FTMS 0 0 0 12641 195857.9375 0.02083645619276723 55 -1.475006103515625 3 Unmodified _FHATTSEVSW_ ENSG00000155380|ENST00000369626|SLC16A1;nc|ENSG00000155380|P53985-2|SLC16A1 24.020572477871973 0.2864316864133941 1 SVS[YT]VSW 8 6 55.883 0 0 4.8029 0 0 236.0778014189878 0 236.0778014189878 0 40.517834938392596 0 0 0 2.1237125054200234 0 0.7302046884880937 0 SVS[YT]VSW 4.8029 - 796 + NaN NaN 166673 NaN 9773 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12645 57.648 NaN 470360 35 0 69054 0.262 + 17689 MANVELSSL 9 70 490.2418112452113 978.4690695572226 2 490.2419738769531 MULTI HCD FTMS 0 0 0 12641 244544.6875 1 0 0 4 Oxidation (M) _M(Oxidation (M))ANVELSSL_ ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E 60.07390631473393 0.0174780869009295 1 {[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L} 9 3 + 63.65 0 0 6.5051 6.5051 85.339 0 0 0 3.0102999566398125 12.715299873086607 3.0102999566398125 3.0102999566398125 0 1.4247425010840047 0 0.8807196863200843 0.7742275032520141 {[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L};{[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}E{I|L}SS{I|L};[VS][MN]E{I|L}SS{I|L};{[CA]|SS}{I|L}KEESS{I|L};[{I|L}P]{[{M(Oxidation (M))|F}D]|MM}[C(Carbamidomethyl (C))K]S{I|L} 6.5051;6.1974;6.0175;5.5052;2.7561 -;-;-;-;- 486 NaN NaN 148832.9 NaN 9774 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12646 57.651 NaN 581870 35 0 105210 0.261 + 15262 LPAAGVGDMVM 11 68 538.7591874628055 1075.5038219924108 2 538.759765625 MULTI HCD FTMS 0 0 0 12641 226085.5 0.8203846548112695 -2 0.052425384521484375 5 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 78.7280429016045 0.006868779721450025 1 AGVGD{M(Oxidation (M))|F}VM 8 3 53.457 0 0 4.9704 0 0 281.1738453595719 0 281.1738453595719 0 25.813345662015493 0 0 0 2.593569022618561 0 0.3494850021680094 0 + AGVGD{M(Oxidation (M))|F}VM 4.9704 + + 731 NaN NaN 170569.7 NaN 9775 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12647 57.654 NaN 587120 35 0 32700 0.261 + 32099 VYRVYVTTF 9 87 574.3109135011384 1146.6072740690768 2 574.3112182617188 MULTI HCD FTMS 0 0 0 12641 109694.9296875 0.6712096290450787 1 -0.029552459716796875 6 Unmodified _VYRVYVTTF_ ENSG00000198018|ENST00000370489|ENTPD7 66.45667989310934 0.010234776021261575 1 VYVTT{M(Oxidation (M))|F} 6 3 59.831 0 0 5.2181 0 0 418.23262221504064 0 418.23262221504064 0 35.97443277280712 0 0 0 2.2971062485323515 0 0.3494850021680094 0 + VYVTT{M(Oxidation (M))|F} 5.2181 + + 1241 NaN NaN 169081.9 NaN 9776 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12648 57.658 NaN 408190 35 0 28918 0.261 -1 NTDEPPMVF 9 78 533.2314738001043 NaN 0 533.2315673828125 PEAK HCD FTMS 0 0 0 12641 73253.90625 0.6946411250511823 1 -0.029552459716796875 7 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;USP14-THOC1|1|fusion;USP14-THOC1|2|fusion 36.12702656103203 0.09069617296470832 1 T{I|L}{I|L}GE 5 -1 26.454 0 0 2.4852 0 0 131.95138213074966 416.1942537897094 548.1456359204591 0 0 0 0 0 0.5 0 0 0 T{I|L}{I|L}GE 2.4852 - 139 + NaN NaN 166907.9 NaN 9777 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12649 57.661 NaN 153790 35 0 14827 0.261 -1 KYMYFTVVM 9 42 607.2852439498403 1212.5559349664804 2 607.2854614257812 MULTI HCD FTMS 0 0 0 12641 66074.7421875 0.11778126011734054 15 -0.42990875244140625 8 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 12.240655878213236 0.2545997876781172 1 C(Carbamidomethyl (C))TVV{M(Oxidation (M))|F} 5 -1 32.893 0 0 2.7127 0 0 588.2880116193375 0 588.2880116193375 0 21.923487412610363 0 0 0 0.9247425010840047 0 0 0 C(Carbamidomethyl (C))TVV{M(Oxidation (M))|F} 2.7127 - 35 NaN NaN 118253.1 NaN 9778 2869 12641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12651 57.666 NaN 1239700 35 0 208700 0.327 -1 DPRNATSVCI 10 98 566.7738872279571 1131.533221522714 2 566.7750854492188 MULTI HCD FTMS 0 0 0 12650 535820.1875 0.012491263380511137 56 -1.4875373840332031 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 26.268140514670165 0.2654086933305545 1 P{M(Oxidation (M))|F}STSVSW 8 -1 81.184 0 0 7.1746 0 0 222.098696684986 0 222.098696684986 0 64.94132235100295 0 0 0 2.805462187404089 0 1.1549471895720984 0 P{M(Oxidation (M))|F}STSVSW 7.1746 - 2889 + NaN NaN 273270.3 NaN 9779 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12652 57.67 NaN 891310 35 0 249530 0.261 -1 HFDMAVYL 8 56 506.23375482749594 1010.4529567217919 2 506.23382568359375 MULTI HCD FTMS 0 0 0 12650 400985.09375 0.7183483353091633 7 -0.2035369873046875 2 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 18.13498045792455 0.4603629008820478 1 AVY{I|L} 4 -1 40.191 0 0 3.9775 0 0 546.1901112287125 0 546.1901112287125 0 25.586681479559203 0 0 0 0.8252574989159953 0 0 0 AVY{I|L} 3.9775 + + 27 NaN NaN 217310.1 NaN 9780 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12653 57.674 NaN 729090 35 0 186770 0.261 + 31989 VYPLMKEYF 9 77 603.2993627880326 1204.584172642865 2 603.299560546875 MULTI HCD FTMS 0 0 0 12650 304843.5 0.09000855667899285 26 -0.6487922668457031 3 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 69.10491478415734 0.009377850133389008 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 68.962 0 0 5.725 5.725 85.606 0 0 0 11.477970719664597 30.083107092853822 11.477970719664597 6.5321251377534395 0 1.805462187404089 2 0.3494850021680094 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VY{[QN]|[E{I|L}]|[KN]}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[Y{I|L}]W{[TV]|[{I|L}S]}[{I|L}T]Y{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F} 5.725;5.1827;4.7169;4.4633;4.294;3.7759;3.5976;3.4229;3.0163;2.8807 -;+;-;-;-;-;-;-;-;- + 726 NaN NaN 215807.8 NaN 9781 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12654 57.677 NaN 362640 35 0 30071 0.261 + 33515 YIEHNARTF 9 75 575.7849136892025 NaN 0 575.7652587890625 PEAK HCD FTMS 0 0 0 12650 8376.103515625 1 0 0 4 Unmodified _YIEHNARTF_ ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;ENST00000473813.1_1_21:40582792-40590527:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 18.1463463914782 0.1998403495282098 1 GDQ 3 9 10.956 0 0 0.95303 0 0 310.167224497885 536.2621554010374 846.4293798989224 0 0 0 0 0 0 0 0.3252574989159953 0.3494850021680094 GDQ 0.95303 - 108 + NaN NaN 144118.3 NaN 9782 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12655 57.681 NaN 581890 35 0 196910 0.261 + -1 YFWFRVTC 8 83 589.7775437770275 1177.540534620855 2 589.7782592773438 MULTI HCD FTMS 0 0 0 12650 156713.46875 0.8578821929815857 -2 0.05248260498046875 5 Carbamidomethyl (C) _YFWFRVTC(Carbamidomethyl (C))_ REV__ENSG00000204740|ENST00000454679|MALRD1 5.230669730166228 0.5342319408533849 1 SSM 3 -1 26.198 0 0 2.2248 0 0 854.3944996772726 0 854.3944996772726 0 6.73393743112328 0 0 0 0 0 0 0 SSM 2.2248 - 206 NaN NaN 170686.2 NaN 9783 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12656 57.684 NaN 118350 35 0 12327 0.263 + 21614 PYPFTHHWQF 10 46 453.88038074765984 1358.6193128431796 3 453.88055419921875 MULTI HCD FTMS 0 0 0 12650 27882.419921875 0.09776549554244425 20 -0.5674934387207031 6 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 14.957161354070239 0.3712077760547347 1 WQ{M(Oxidation (M))|F} 3 7 26.427 0 0 1.9451 0 0 879.4032376146993 0 879.4032376146993 0 19.436974992327123 0 0 0 0.5 0 0 0 + WQ{M(Oxidation (M))|F} 1.9451 + + 15 NaN NaN 100384.3 NaN 9784 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12657 57.687 NaN 135870 35 0 7611.8 0.261 + 35456 YYEYNHDLF 9 51 632.2696861215486 1262.524819309897 2 632.2695922851562 MULTI HCD FTMS 0 0 0 12650 51267.546875 0.0723330008035915 19 -0.5380134582519531 7 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 13.90604991867851 0.24021115267848145 1 YYEH 4 5 35.788 0 0 2.8347 0 0 0 667.2713106744749 667.2713106744749 8.904243831634986 0 0 0 0 0.3494850021680094 2 0.3252574989159953 0 YYEH 2.8347 - 67 + NaN NaN 118617.9 NaN 9785 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12658 57.691 NaN 210770 35 0 45232 0.261 -1 MPDSENPTSVF 11 60 620.2637727105281 1238.512992487856 2 620.2635498046875 MULTI HCD FTMS 0 0 0 12650 54205.81640625 0.8311822459278824 -3 0.08197784423828125 8 Oxidation (M) _M(Oxidation (M))PDSENPTSVF_ ENSG00000116497|ENST00000373475|S100PBP;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;nc|ENSG00000116497|Q96BU1-2|S100PBP 14.405379775768559 0.3315678654765638 1 V{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.8537 0 0 974.3688221662125 0 974.3688221662125 0 11.989700043360187 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.8537 + + 22 NaN NaN 113257.2 NaN 9786 2870 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12660 57.696 NaN 726790 35 0 73137 0.327 + 19973 NYGRVFSEW 9 98 579.2720888138787 1156.5296246945572 2 579.2723999023438 MULTI HCD FTMS 0 0 0 12659 332143.3125 0.8766943154935711 2 -0.059108734130859375 1 Unmodified _NYGRVFSEW_ ENSG00000114520|ENST00000251775|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4 114.20165948288297 0.0022564706844261533 1 NYGRV{M(Oxidation (M))|F}SEW 9 0 + 98.184 0 0 8.4896 8.4896 89.752 0 0 0 7.800084529637985 7.800084529637985 7.800084529637985 5.172203223519531 0 2.6989700043360187 1.6989700043360187 1.086696871556164 0.3494850021680094 + + NYGRV{M(Oxidation (M))|F}SEW;NYG{M(Oxidation (M))|F}[RV]SEW;[YN]GRV{M(Oxidation (M))|F}SEW;NYGRV{M(Oxidation (M))|F}ESW;NYG{M(Oxidation (M))|F}[RV]ESW;NYG{M(Oxidation (M))|F}[KG]QASW;[YN]RR{M(Oxidation (M))|F}SE[VS];NYG{M(Oxidation (M))|F}[KG][AG]ASW;NYG{M(Oxidation (M))|F}N[KA]ASW;[YN]GRV{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}W 8.4896;8.0423;7.8151;7.4678;7.0205;6.2001;6.158;5.4077;5.2284;4.5407 +;-;+;-;-;-;-;-;-;- + 4008 + NaN NaN 199742.2 NaN 9787 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12661 57.7 NaN 455380 35 0 85369 0.261 -1 MPVMEQSVL 9 56 525.2538696990465 1048.493186464893 2 525.2540893554688 MULTI HCD FTMS 0 0 0 12659 267054.4375 1 0 0 2 Oxidation (M) _MPVM(Oxidation (M))EQSVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 39.94969957227396 0.06557568441294001 1 QSV{I|L} 4 -1 53.418 0 0 5.0947 0 0 603.23930556465 0 603.23930556465 0 46.42790030352131 0 0 0 1.274227503252014 0 0.8494850021680094 0.3252574989159953 QSV{I|L} 5.0947 + + 37 NaN NaN 162160.6 NaN 9788 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12662 57.704 NaN 354420 35 0 32531 0.261 + 25296 SAYEFYHAL 9 65 550.7560969661376 1099.4976409990752 2 550.7559204101562 MULTI HCD FTMS 0 0 0 12659 118398.46875 0.02723716742447857 23 -0.572998046875 3 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 64.23631603340823 0.01165516075559909 1 [YE]AS{M(Oxidation (M))|F}YHA{I|L} 9 4 + 57.009 0 0 5.185 5.185 81.979 0 0 0 0.6606124668105906 0.6606124668105906 0.6606124668105906 0.6606124668105906 0 1.742992819099939 1.2218487496163564 0.7059771852360797 0 [YE]AS{M(Oxidation (M))|F}YHA{I|L};{[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L} 5.185;5.1249;4.4148;4.0737 -;+;-;- + 441 NaN NaN 135406.8 NaN 9789 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12663 57.707 NaN 309660 35 0 77803 0.261 + 18784 NADPIAKYL 9 65 502.77427923256914 1003.5340055319383 2 502.77459716796875 MULTI HCD FTMS 0 0 0 12659 39984.17578125 0.06828878421981636 11 -0.31838226318359375 4 Unmodified _NADPIAKYL_ ENSG00000172716|ENST00000685675|SLFN11 24.990960013464015 0.14443998892849796 1 H{I|L}{I|L} 3 7 24.425 0 0 2.4339 0 0 622.2994862287125 0 622.2994862287125 0 9.719712763997562 0 0 0 0.2742275032520141 0 0 0 H{I|L}{I|L} 2.4339 - 38 NaN NaN 127680.8 NaN 9790 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12664 57.71 NaN 122350 35 0 8798.9 0.261 -1 QYFDSRGMFI 10 52 640.2928404276222 1278.5711279220443 2 640.2930908203125 MULTI HCD FTMS 0 0 0 12659 34271.66796875 0.5125806666837263 -6 0.16732406616210938 5 Oxidation (M) _QYFDSRGM(Oxidation (M))FI_ ENSG00000151353|ENST00000281017|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18 4.897010918128616 0.4493830473644964 1 D{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4 -1 13.188 0 0 1.0314 0 0 725.3528764094098 0 725.3528764094098 0 6.197887582883936 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.0314 - 19 NaN NaN 121397.4 NaN 9791 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12665 57.714 NaN 180310 35 0 23737 0.264 -1 MAYGVEPAL 9 35 483.7350101639901 965.4554673947803 2 483.73388671875 MULTI HCD FTMS 0 0 0 12659 51763.03515625 0.6349395507496466 -2 0.059162139892578125 6 Oxidation (M) _M(Oxidation (M))AYGVEPAL_ ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A 11.640296217721598 0.25978676193971967 1 EE[PA]{I|L} 5 -1 27.218 0 0 2.8192 0 0 408.17973525215 0 408.17973525215 0 10.228787452803374 0 0 0 1 0 0 0 EE[PA]{I|L} 2.8192 - 45 NaN NaN 112011.2 NaN 9792 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12666 57.717 NaN 135290 35 0 5931.4 0.261 + 27422 SYTSVLSRL 9 61 513.2850686237668 1024.5555843143336 2 513.7685546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SYTSVLSRL_ ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5 11.494710602746466 0.2610445893512368 1 NP 2 9 14.949 0 0 1.459 0 0 0 810.4281735984414 810.4281735984414 -1.249387366082999 0 -1.249387366082999 0 0 0 0 0 0 NP 1.459 - 53 + NaN NaN 116842.5 NaN 9793 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12667 57.72 NaN 56040 35 0 11885 0.261 + 15908 LPLQLVEK 8 28 470.29731574195284 938.5800785507057 2 470.29705810546875 MULTI HCD FTMS 0 0 0 12659 31395.134765625 0.03042503812955867 15 -0.4331512451171875 8 Unmodified _LPLQLVEK_ REV__ENSG00000135519|ENST00000257981|KCNH3 3.5964929083625545 0.5366564765791996 1 {I|L}P{I|L} 3 -1 26.198 0 0 2.7912 0 0 0 612.3369234674436 612.3369234674436 9.208187539523749 0 0 0 0 0 0 0 0 {I|L}P{I|L} 2.7912 + + 5 + NaN NaN 96111.4 NaN 9794 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12668 57.724 NaN 84037 35 0 9973.9 0.261 + 10898 IWPAGNRS 8 41 450.7373829801023 NaN 0 450.737060546875 PEAK HCD FTMS 0 0 0 12659 27430.900390625 0.72407516685627 2 -0.059108734130859375 9 Unmodified _IWPAGNRS_ ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF 5.230669730166228 0.38822285293237185 1 H 1 8 3.0989 0 0 0.34453 0 0 612.4528410561047 146.9280947320922 759.3809357881969 0 0 0 0 0 0 0 0 0 H 0.34453 - 1 + NaN NaN 103029.5 NaN 9795 2871 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12670 57.728 NaN 343010 35 0 30639 0.327 + 31657 VYKAFVMETF 10 70 625.8099156559057 1249.6052783786113 2 625.8102416992188 MULTI HCD FTMS 0 0 0 12669 162478.65625 0.6309354555612617 5 -0.14105987548828125 1 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 117.76058876431921 4.161225987453182E-05 1 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 110.73 0 0 8.8611 8.8611 96.671 0 0 0 5.07368279060961 5.07368279060961 5.07368279060961 30.07368279060961 0 3.548455006504028 2 1.4731975075880328 0.28872548999643577 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YK]VA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}D[YV];[YK]VA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}D[YV];[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}KYV{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[YV]K{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K[YV];[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}[YV];[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}KYV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[YV]K{M(Oxidation (M))|F} 8.8611;6.4544;6.2747;4.2741;3.7479;3.4273;2.4668;2.3893;2.0688;1.7482 +;-;-;-;-;-;-;-;-;- + 750 + NaN NaN 155840.7 NaN 9796 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12671 57.733 NaN 922890 35 0 59762 0.261 + 22736 QYESKVFYL 9 96 588.8005989090054 1175.5866448848108 2 588.800537109375 MULTI HCD FTMS 0 0 0 12669 424655.15625 0.17269105278857183 -4 0.114959716796875 2 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 126.56589448801843 0.0008132384440316759 1 [YQ]ESKV{M(Oxidation (M))|F}Y{I|L} 9 0 + 55.335 0 0 4.707 4.707 87.889 0 0 0 0.07245752277560769 4.69073936475958 0.07245752277560769 14.330984399557423 0 1.2931576817365436 1.0457574905606752 0.2614393726401688 0 + + [YQ]ESKV{M(Oxidation (M))|F}Y{I|L};[YQ]ESKV{I|L}[Y{M(Oxidation (M))|F}];[Y{M(Oxidation (M))|F}]VKSEQY{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}ESK[QT][TP]{I|L};[Y{M(Oxidation (M))|F}]VKSE[AG]Y{I|L};{[HG]|PP}[WP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]VKSES{[CT]|[{M(Oxidation (M))|F}G]}{I|L};{[HG]|PP}[HQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Y{I|L};{[HG]|PP}[HQ]V[WH]Y{I|L};[Y{M(Oxidation (M))|F}]VKSE{I|L}[YQ] 4.707;3.488;3.0961;2.3296;2.3128;1.2272;0.7998;0.56532;0.26804;0.26362 +;-;-;-;-;-;-;-;-;- + 1323 + NaN NaN 232152.7 NaN 9797 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12672 57.736 NaN 311360 35 0 49961 0.261 + 16509 LTHYLLPY 8 55 510.28137318349826 1018.5481934337965 2 510.28125 MULTI HCD FTMS 0 0 0 12669 104519.96875 0.9530007376936375 -1 0.032867431640625 3 Unmodified _LTHYLLPY_ ENSG00000172992|ENST00000651974|DCAKD 24.67388899826682 0.4122521268485776 1 V{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 5 6 41.682 0 0 4.0923 0 0 415.18208510566564 0 415.18208510566564 0 12.64136888583522 0 0 0 1 0 0 0 V{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 4.0923 - 121 NaN NaN 145856.3 NaN 9798 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12673 57.74 NaN 358370 35 0 60689 0.261 + 31636 VYISNGQVL 9 62 496.7740821863856 991.5336114395712 2 496.7742004394531 MULTI HCD FTMS 0 0 0 12669 96566.5078125 0.4574555159628695 3 -0.088714599609375 4 Unmodified _VYISNGQVL_ ENSG00000113811|ENST00000495461|SELENOK;ENST00000487571.1_1_3:53922418-53925815:-|nuORF 51.629811660486645 0.02929079705179888 1 [YV]{I|L}SNGQV{I|L} 9 0 + 45.288 0 0 4.5675 4.5675 85.523 0 0 0 0.4975128694283768 30.071837567538182 0.4975128694283768 9.208187539523749 0 1.9731975075880328 0 0 0.3494850021680094 + + [YV]{I|L}SNGQV{I|L};[YV]{I|L}SGGGQV{I|L};[YV]{I|L}S[QA][QA]{I|L} 4.5675;3.6388;2.0784 +;-;- + 427 NaN NaN 134356.9 NaN 9799 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12674 57.743 NaN 213920 35 0 15255 0.261 + 13137 KYLLKLKFNF 10 67 438.60379359307683 1312.7895513794306 3 438.6044006347656 MULTI HCD FTMS 0 0 0 12669 49329.7265625 0.6958424268926322 -1 0.032867431640625 5 Unmodified _KYLLKLKFNF_ ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF 32.037481411007896 0.2145045983280644 1 KA 2 9 18.583 0 0 1.4156 0 0 0 1110.6345657853592 1110.6345657853592 1.593793813122062 0 0 0 0 0 0 0 0 KA 1.4156 - 26 + NaN NaN 133040.8 NaN 9800 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12675 57.746 NaN 64436 35 0 6909.1 0.261 + 3250 EDTLQGFPQVR 11 34 645.3265927407199 1288.6386325482397 2 645.3272094726562 MULTI HCD FTMS 0 0 0 12669 19343.47265625 0.16037435512521298 5 -0.14105987548828125 6 Unmodified _EDTLQGFPQVR_ REV__DDR1|p.A842V|1|0.22|ENSG00000204580|chr6:30898961-30898961|C/T|missense_variant 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110522.4 NaN 9801 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12676 57.75 NaN 111740 35 0 10123 0.264 + 6281 FPFHSAPAL 9 45 493.7582039032258 985.5018548732517 2 493.7576599121094 MULTI HCD FTMS 0 0 0 12669 34562.23828125 0.04205217478689158 19 -0.5183944702148438 7 Unmodified _FPFHSAPAL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 16.942295170755138 0.21397866736869717 1 W{I|L} 2 8 19.464 0 0 1.975 0 0 668.3063221662125 0 668.3063221662125 0 7.474250108400469 0 0 0 0 0 0 0 W{I|L} 1.975 - 16 NaN NaN 103571.8 NaN 9802 2872 12669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12678 57.755 NaN 655100 35 0 145110 0.326 + 7460 FVVEHDFIM 9 80 576.7735754858928 1151.5325980385855 2 576.7736206054688 MULTI HCD FTMS 0 0 0 12677 379070.03125 0.8908544336055636 -2 0.059108734130859375 1 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 112.59319219568356 0.00251905749371435 1 DVEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 81.566 0 0 7.0833 0 0 131.0948671809668 0 131.0948671809668 0 67.29659068020052 0 0 0 3.055462187404089 0 0.7302046884880937 0 DVEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.0833 - 736 + NaN NaN 186715.1 NaN 9803 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12679 57.759 NaN 559720 35 0 63383 0.261 + 28016 TFTFSHATF 9 81 529.7509545642309 1057.4873561952618 2 529.7510986328125 MULTI HCD FTMS 0 0 0 12677 267990.8125 0.33891441548537876 10 -0.2887840270996094 2 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 103.74828524460852 0.00396301343438984 1 TAHS{M(Oxidation (M))|F}TET 8 7 71.151 0 0 6.7284 0 0 165.0790272443375 0 165.0790272443375 0 55.57827834592722 0 0 0 2.274227503252014 0 1.5044321917401078 0 TAHS{M(Oxidation (M))|F}TET 6.7284 - 888 NaN NaN 172174.5 NaN 9804 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12680 57.763 NaN 269260 35 0 37056 0.261 + 8421 GYSEHFVEF 9 67 557.7455165912979 1113.4764802493958 2 557.7459716796875 MULTI HCD FTMS 0 0 0 12677 116089.09375 0.02479333343727151 28 -0.7054672241210938 3 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 36.04419817259434 0.08350412372117409 1 E{M(Oxidation (M))|F} 2 7 34.464 0 0 3.0952 0 0 819.3546978781052 0 819.3546978781052 0 27.47425010840047 0 0 0 1 0 0.5 0 + E{M(Oxidation (M))|F} 3.0952 + + 65 + NaN NaN 126170.5 NaN 9805 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12681 57.766 NaN 407900 35 0 31074 0.261 -1 CRRHGVSSW 9 79 572.7751334739647 1143.5357140147294 2 573.7642822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))RRHGVSSW_ ENST00000373580.7_1_9:127573745-127573916:+|nuORF 19.256988751693697 0.19398022840297344 1 SV{[YD]|[{M(Oxidation (M))|F}M]}SVSW 8 -1 51.433 0 0 4.4977 0 0 202.10769251169341 0 202.10769251169341 0 27.67220322351953 0 0 0 0.6747425010840047 0 0.6549471895720985 0 SV{[YD]|[{M(Oxidation (M))|F}M]}SVSW 4.4977 - 321 + NaN NaN 148005 NaN 9806 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12682 57.769 NaN 161970 35 0 8186.2 0.261 + 9584 HRVDTSQEMS 10 57 595.2672692806576 1188.5199856281151 2 595.2670288085938 MULTI HCD FTMS 0 0 0 12677 33524.73046875 0.2635719420154264 4 -0.11481857299804688 5 Unmodified _HRVDTSQEMS_ ENSG00000186788|ENST00000445385|SPATA31D3 5.296884461304476 0.4472664531305844 1 W 1 10 18.852 0 0 1.5861 0 0 984.4300178320199 0 984.4300178320199 0 3.6484812193980787 0 0 0 0.4247425010840047 0 0 0 W 1.5861 - 84 + NaN NaN 111353.3 NaN 9807 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12683 57.773 NaN 202270 35 0 40619 0.261 -1 LFPMTCKLDR 10 55 620.3164889189953 1238.6184249047906 2 620.3163452148438 MULTI HCD FTMS 0 0 0 12677 54758.38671875 0.7274938302755698 1 -0.029541015625 6 Oxidation (M) _LFPM(Oxidation (M))TCKLDR_ ENST00000560816.5_1_15:76566760-76576127:-|nuORF 12.240655878213236 0.39661705172222156 1 {I|L}PT 3 -1 25.049 0 0 2.0224 0 0 0 924.4246309869749 924.4246309869749 17.090606190045108 0 0 0 0 0 0 0.4247425010840047 0 {I|L}PT 2.0224 - 24 + NaN NaN 113837.3 NaN 9808 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12684 57.776 NaN 164550 35 0 14672 0.263 + 20997 PLMHIEGF 8 64 472.2392295216379 NaN 0 472.2477722167969 PEAK HCD FTMS 0 0 0 12677 5493.9326171875 0.30955517339322625 -1 0.026241302490234375 7 Unmodified _PLMHIEGF_ ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 19.438996006549623 0.38500361301801034 1 {M(Oxidation (M))|F} 1 7 8.9794 0 0 0.95276 0 0 585.2955539145665 207.11353479556877 792.4090887101353 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.95276 + + 80 + NaN NaN 102186.1 NaN 9809 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12685 57.779 NaN 113740 35 0 9731.9 0.261 -1 MITLRYLV 8 47 512.7984392664515 NaN 0 512.7874145507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _M(Oxidation (M))ITLRYLV_ ENST00000567239.5_1_16:69681305-69687170:+|nuORF 2.8892196856762586 0.38822285293237185 1 T 1 -1 6.9897 0 0 0.68287 0 0 131.1172829774918 788.396403318988 919.5136862964798 0 0 0 0 0 0 0 0 0 T 0.68287 + + 3 + NaN NaN 103726.1 NaN 9810 2873 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12687 57.784 NaN 660770 35 0 147740 0.327 + 7461 FVVEHDFIM 9 81 576.7735754858928 1151.5325980385855 2 576.7736206054688 MULTI HCD FTMS 0 0 0 12686 402038.875 0.9448336316498062 -1 0.029541015625 1 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 112.59319219568356 0.00251905749371435 1 NVEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 75.986 0 0 6.5986 0 0 132.1134218684668 0 132.1134218684668 0 56.31981629103841 0 0 0 2.885151878060192 0 0.7059771852360797 0 NVEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.5986 - 891 + NaN NaN 187199.6 NaN 9811 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12688 57.789 NaN 784370 35 0 141560 0.261 + 5703 FPAGYMYPSM 10 98 598.2433088441734 1194.4720647551467 2 598.2435302734375 MULTI HCD FTMS 0 0 0 12686 338513.3125 0.9220376810200237 -2 0.055782318115234375 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 147.8311659463005 2.5684209414330044E-07 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 0 + 74.498 0 0 6.2369 6.2369 85.249 0 0 0 9.201300499198766 54.09194712146184 9.201300499198766 3.789850105233299 0 2.6816146521464015 1.0969100130080565 0.6747425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{[RE]|[WV]}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[YC]|[HE]}T[PA]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 6.2369;5.9196;4.8526;4.5759;4.2833;4.0275;4.0041;3.8444;3.5968;3.5194 +;-;-;-;-;-;-;-;-;- + 1053 NaN NaN 204142.5 NaN 9812 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12689 57.792 NaN 2042200 35 0 414290 0.264 + 12639 KWFFQKLRF 9 106 433.9166464909982 1298.7281100731946 3 433.9167175292969 MULTI HCD FTMS 0 0 0 12686 663507.125 0.1924958957254983 -5 0.1478118896484375 3 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 86.33184430468982 0.004622086694044132 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 94.039 0 0 7.2409 7.2409 88.381 0 0 0 16.478174818886373 6.690067809585756 6.690067809585756 6.690067809585756 0 1.6549471895720984 0 0 1.4916440611282624 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F} 7.2409;6.7257;6.5901;6.5803;6.5318;6.0652;6.0167;5.9296;5.8811;5.8713 +;-;-;-;-;-;-;-;-;- + 2090 + NaN NaN 392673.3 NaN 9813 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12690 57.796 NaN 1309100 35 0 100550 0.261 + 12818 KYELDFSHF 9 104 593.2823792333921 1184.5502055335842 2 593.2825927734375 MULTI HCD FTMS 0 0 0 12686 515124.84375 0.4402887455281992 -4 0.11825942993164062 4 Unmodified _KYELDFSHF_ ENSG00000137462|ENST00000642700|TLR2 208.14542850568068 7.55743023528371E-18 1 KYE{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F} 9 0 + 90.636 0 0 7.6515 7.6515 87.934 0 0 0 4.04561271747022 4.04561271747022 4.04561271747022 4.04561271747022 0 2.666386562212267 0 1.8388903526330402 0 + + KYE{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YK]E{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YE]K{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YK]E{I|L}DAYH{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[CA]|SS}{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YE]K{I|L}DAYH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YK]D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YK]E{I|L}DA{M(Oxidation (M))|F}WN;[{M(Oxidation (M))|F}V]{[CA]|SS}{I|L}DAYH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}E 7.6515;7.31;6.5354;6.2908;5.5383;5.5161;4.7981;4.6008;4.5191;4.3679 +;+;-;-;-;-;-;-;-;- + 2830 + NaN NaN 279126.5 NaN 9814 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12691 57.799 NaN 415460 35 0 35243 0.261 + 5408 FHATTSEVSW 10 83 582.7692560816736 1163.523959230147 2 582.7698974609375 MULTI HCD FTMS 0 0 0 12686 206996.078125 0.022021393510927714 60 -1.5890274047851562 5 Unmodified _FHATTSEVSW_ ENSG00000155380|ENST00000369626|SLC16A1;nc|ENSG00000155380|P53985-2|SLC16A1 30.636539890814138 0.2266618088935899 1 SVS[YT]VSW 8 6 62.648 0 0 5.3843 0 0 236.07799024490754 0 236.07799024490754 0 48.49128313749111 0 0 0 2.5233623702246373 0 0.7059771852360797 0 SVS[YT]VSW 5.3843 - 768 + NaN NaN 143492.3 NaN 9815 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12692 57.802 NaN 447230 35 0 173910 0.264 -1 SWPRIIMRF 9 56 407.88994171490526 1220.6479957449158 3 407.8904724121094 MULTI HCD FTMS 0 0 0 12686 131564.90625 0.6906243876664614 6 -0.16730499267578125 6 Oxidation (M) _SWPRIIM(Oxidation (M))RF_ ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3919 0 0 1055.5689532417891 0 1055.5689532417891 0 2.1127451000356423 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3919 + + 14 + NaN NaN 153004.9 NaN 9816 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12693 57.806 NaN 390870 35 0 59844 0.261 + 11670 IYVTGGHLF 9 63 503.77149256957364 1005.5284322059473 2 503.7713317871094 MULTI HCD FTMS 0 0 0 12686 95243.296875 1 0 0 7 Unmodified _IYVTGGHLF_ ENSG00000130487|ENST00000648057|KLHDC7B;KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;nc|ENSG00000130487|Q96G42|KLHDC7B 60.38955033654506 0.017036522530421875 1 {I|L}YVT 4 5 66.587 0 0 6.6221 0 0 0 526.2418042775138 526.2418042775138 46.9825221775622 0 0 0 0 1.2614393726401687 1.3979400086720375 0.805462187404089 0 + {I|L}YVT 6.6221 + + 47 + NaN NaN 144704.9 NaN 9817 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12694 57.809 NaN 119910 35 0 6695.4 0.261 + 35457 YYEYNHDLF 9 48 632.2696861215486 1262.524819309897 2 632.2701416015625 MULTI HCD FTMS 0 0 0 12686 42080.6328125 0.059371252041054506 23 -0.5582466125488281 8 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 9.38312468134398 0.279288223203164 1 YYQ 3 7 25.929 0 0 2.0537 0 0 0 805.3350313775999 805.3350313775999 9.106056125004827 0 0 0 0 0.3252574989159953 1.6989700043360187 0 0 YYQ 2.0537 - 92 + NaN NaN 109274.2 NaN 9818 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12695 57.812 NaN 202200 35 0 12202 0.261 + 13968 KYSEIQQLL 9 69 561.3138024899254 1120.6130520466506 2 561.314208984375 MULTI HCD FTMS 0 0 0 12686 41421.140625 0.32898188848755805 6 -0.16730499267578125 9 Unmodified _KYSEIQQLL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 10.799506525563784 0.2670509983294061 1 Q{I|L}{I|L} 3 6 27.848 0 0 2.4851 0 0 748.3726673810562 0 748.3726673810562 0 10.858565581929653 0 0 0 0.8807196863200843 0 0 0 + Q{I|L}{I|L} 2.4851 + + 46 NaN NaN 109506.4 NaN 9819 2874 12686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12697 57.817 NaN 1188600 35 0 173950 0.327 -1 DPRNATSVCI 10 109 566.7738872279571 1131.533221522714 2 566.7749633789062 MULTI HCD FTMS 0 0 0 12696 468311.875 0.010917481482248201 61 -1.6016998291015625 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 1 {M(Oxidation (M))|F}STSVSW 7 -1 67.492 0 0 5.9647 0 0 319.16462905097814 0 319.16462905097814 0 46.1684902698275 0 0 0 2.611407999752478 0 1.086696871556164 0 {M(Oxidation (M))|F}STSVSW 5.9647 - 6080 NaN NaN 266551.9 NaN 9820 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12698 57.822 NaN 729440 35 0 194650 0.261 -1 HFDMAVYL 8 56 506.23375482749594 1010.4529567217919 2 506.23388671875 MULTI HCD FTMS 0 0 0 12696 338300.21875 0.6060509549148004 12 -0.337738037109375 2 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 VY{I|L} 3 -1 34.693 0 0 3.4334 0 0 617.2253683566793 0 617.2253683566793 0 23.723637474483468 0 0 0 1 0 0 0 VY{I|L} 3.4334 + + 63 NaN NaN 190570.8 NaN 9821 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12699 57.825 NaN 680160 35 0 183210 0.261 + 31990 VYPLMKEYF 9 67 603.2993627880326 1204.584172642865 2 603.2994995117188 MULTI HCD FTMS 0 0 0 12696 251446.765625 0.07424255546044854 31 -0.7905044555664062 3 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 63.960520009940105 0.0120409805053046 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 84.034 0 0 6.9762 6.9762 87.806 0 0 0 17.619478172486467 51.08471912431625 17.619478172486467 6.5321251377534395 0 2.305462187404089 2 0.7614393726401688 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YE]K{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F} 6.9762;6.4339;5.4927;5.4302;5.2274;5.165;5.1225;5.0012;4.8583;4.5825 -;+;-;-;-;-;-;-;-;- + 526 NaN NaN 188111.1 NaN 9822 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12700 57.828 NaN 1196100 35 0 343870 0.261 + 6819 FPSNLVTEM 9 86 527.2501047303765 1052.485656527553 2 527.2662353515625 MULTI HCD FTMS 0 0 0 12696 27181.1875 0.3475681561622761 -3 0.088714599609375 4 Oxidation (M) _FPSNLVTEM(Oxidation (M))_ ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10 45.69961567697781 0.039180348357221985 1 [{I|L}P]{M(Oxidation (M))|F}DKGTE{M(Oxidation (M))|F} 9 5 + 72.189 0 0 6.8589 6.8589 85.336 0 0 0 6.94537812595911 6.237125054200234 6.237125054200234 1.500313728876904 0 1.2059771852360797 1.6989700043360187 0.3252574989159953 0.3054621874040891 [{I|L}P]{M(Oxidation (M))|F}DKGTE{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}DKETG{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}DKGT{M(Oxidation (M))|F}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}KGTE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}KETG{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DKGTE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DKETG{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}KGT{M(Oxidation (M))|F}E;[{I|L}P]{M(Oxidation (M))|F}[NS]VTE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DKGT{M(Oxidation (M))|F}E 6.8589;6.7164;6.2663;6.199;6.0565;6.0275;5.885;5.6064;5.5997;5.4349 -;-;-;-;-;-;-;-;-;- 1604 NaN NaN 275056.4 NaN 9823 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12701 57.832 NaN 318540 35 0 40750 0.261 -1 LPAAGVGDMVM 11 58 538.7591874628055 1075.5038219924108 2 538.7594604492188 MULTI HCD FTMS 0 0 0 12696 101218.328125 0.3672856648453878 4 -0.10478973388671875 5 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 27.628801355627647 0.21662447369784368 1 VM 2 -1 24.464 0 0 2.2747 0 0 827.3849339600763 0 827.3849339600763 0 11.99978074068973 0 0 0 0.3494850021680094 0 0 0 VM 2.2747 + + 133 NaN NaN 135657.2 NaN 9824 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12702 57.835 NaN 587140 35 0 58960 0.262 -1 KFCGKKYTRK 10 88 439.2483207060336 1314.7231327183008 3 439.2481384277344 MULTI HCD FTMS 0 0 0 12696 114716.4921875 0.3489159630151305 -3 0.088714599609375 6 Carbamidomethyl (C) _KFC(Carbamidomethyl (C))GKKYTRK_ ENSG00000177125|ENST00000319119|ZBTB34;nc|ENSG00000177125|Q8NCN2|ZBTB34 7.477065608646677 0.43572640772348226 1 K{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q 6 -1 42.396 0 0 3.2247 0 0 0 559.3367912655855 559.3367912655855 23.812281309285623 0 0 0 0 0.9247425010840047 0 0.7742275032520141 0 K{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q 3.2247 - 198 + NaN NaN 168439.9 NaN 9825 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12703 57.838 NaN 130940 35 0 20438 0.261 + 25054 SAAPPDGLL 9 49 420.7265990749798 839.4386452167596 2 420.7266845703125 MULTI HCD FTMS 0 0 0 12696 51977.7734375 0.7126926718625355 -5 0.15119171142578125 7 Unmodified _SAAPPDGLL_ ENSG00000130522|ENST00000252818|JUND 36.12702656103203 0.08312389501731911 1 {[SA]|[TG]}AP[DP]G{I|L}{I|L} 9 0 + 43.567 0 0 5.19 5.19 82.475 0 0 0 1.706962271689747 16.478174818886373 1.706962271689747 1.706962271689747 0 1.4247425010840047 0 0.4247425010840047 0 + + {[SA]|[TG]}AP[DP]G{I|L}{I|L};[QT]P[DP]G{I|L}{I|L} 5.19;4.9866 +;- + 45 NaN NaN 99744.4 NaN 9826 2875 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12705 57.843 NaN 410900 35 0 34748 0.327 + 4000 ERNLAEQSSM 10 87 582.7692560816736 1163.523959230147 2 582.7697143554688 MULTI HCD FTMS 0 0 0 12704 180814.359375 0.01923603672248646 62 -1.6211166381835938 1 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 17.11289562659939 0.35104376501799556 1 SVSTYVSW 8 -1 56.011 0 0 4.8139 0 0 236.07862217483245 0 236.07862217483245 0 36.97025986567944 0 0 0 2.216190326687972 0 0.3494850021680094 0 SVSTYVSW 4.8139 - 1504 + NaN NaN 154396.7 NaN 9827 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12706 57.848 NaN 297390 35 0 16911 0.261 + 25297 SAYEFYHAL 9 62 550.7560969661376 1099.4976409990752 2 550.7559814453125 MULTI HCD FTMS 0 0 0 12704 65798.5 0.015136722456805871 28 -0.7185707092285156 2 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 54.773552608820026 0.024892918755467567 1 {[SA]|[TG]}YE{M(Oxidation (M))|F}Y 6 3 44.526 0 0 4.0496 0 0 0 336.16831384830317 336.16831384830317 8.339993556128107 0 0 0 0 1.610924374808178 0 0 0 + {[SA]|[TG]}YE{M(Oxidation (M))|F}Y 4.0496 + + 243 + NaN NaN 127146.7 NaN 9828 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12707 57.851 NaN 312680 35 0 49014 0.261 -1 MPSEDVVSL 9 56 496.7342185425719 991.4538841519438 2 496.7359313964844 MULTI HCD FTMS 0 0 0 12704 121675.140625 0.7496026596463052 -8 0.22987747192382812 3 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF 34.10243960390752 0.09241788333544565 1 TS{I|L} 3 -1 40.56 0 0 4.0909 0 0 672.2845936505875 0 672.2845936505875 0 16.60728139283883 0 0 0 0.8807196863200843 0 0.7059771852360797 0 TS{I|L} 4.0909 - 38 NaN NaN 143574.4 NaN 9829 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12708 57.855 NaN 154860 35 0 10490 0.261 -1 KYMYFTVVM 9 52 607.2852059969001 1212.5558590606001 2 607.2857666015625 MULTI HCD FTMS 0 0 0 12704 85485.515625 0.4736135993071189 -11 0.3151092529296875 4 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 17.11289562659939 0.2125047172822487 1 TVV{M(Oxidation (M))|F} 4 -1 32.44 0 0 2.6753 0 0 748.3274595923342 0 748.3274595923342 0 26.95554701812867 0 0 0 1.305462187404089 0 0 0 TVV{M(Oxidation (M))|F} 2.6753 + + 42 NaN NaN 125855.2 NaN 9830 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12709 57.858 NaN 206760 35 0 15413 0.261 + 13883 KYQEGLITL 9 62 532.8025864868974 1063.5906200405948 2 532.802734375 MULTI HCD FTMS 0 0 0 12704 47966.06640625 0.008141069540525637 42 -1.1017837524414062 5 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 27.223235318498237 0.1251536255799991 1 W{I|L}{I|L}T{I|L} 5 5 46.186 0 0 4.3424 0 0 419.2163258283219 0 419.2163258283219 0 29.987737688117235 0 0 0 1.4247425010840047 0 0 0 W{I|L}{I|L}T{I|L} 4.3424 - 115 NaN NaN 117681 NaN 9831 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12710 57.861 NaN 104350 35 0 11357 0.261 -1 LCSAEISIS 9 44 490.2418112452113 978.4690695572226 2 490.24237060546875 MULTI HCD FTMS 0 0 0 12704 38939.34375 0.15923201664317488 7 -0.20010757446289062 6 Carbamidomethyl (C) _LC(Carbamidomethyl (C))SAEISIS_ ENSG00000164893|ENST00000297524|SLC7A13;nc|ENSG00000164893|Q8TCU3-2|SLC7A13 32.30548876998284 0.10066689432505688 1 {I|L}SS{I|L} 4 -1 40.31 0 0 4.1197 0 0 560.226854392775 0 560.226854392775 0 33.32030518180558 0 0 0 1.2887254899964358 0 0 0 {I|L}SS{I|L} 4.1197 - 59 NaN NaN 92650.4 NaN 9832 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12711 57.865 NaN 109740 35 0 21100 0.261 -1 MPDSENPTSVF 11 55 620.2637727105281 1238.512992487856 2 620.262939453125 MULTI HCD FTMS 0 0 0 12704 17755.220703125 0.27225536297368774 3 -0.07858657836914062 7 Oxidation (M) _M(Oxidation (M))PDSENPTSVF_ ENSG00000116497|ENST00000373475|S100PBP;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;nc|ENSG00000116497|Q96BU1-2|S100PBP 6.630372943996041 0.3898421031449734 1 V{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.3285 0 0 974.361131736525 0 974.361131736525 0 10 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.3285 + + 5 NaN NaN 99577.5 NaN 9833 2876 12704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12713 57.87 NaN 3269500 35 0 209660 0.327 + 22737 QYESKVFYL 9 117 588.8005989090054 1175.5866448848108 2 588.80078125 MULTI HCD FTMS 0 0 0 12712 2255874.5 0.9173781046345014 1 -0.0262603759765625 1 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 185.05004568166646 7.3094861853412E-13 1 [YQ]ESKV{M(Oxidation (M))|F}Y{I|L} 9 0 + 78.703 0 0 6.6948 6.6948 88.175 0 0 0 8.747695555599321 8.747695555599321 8.747695555599321 8.747695555599321 0 2.579689690656103 1.0457574905606752 1.7658715643802765 2.360924374808178 + + [YQ]ESKV{M(Oxidation (M))|F}Y{I|L};QYESKV{M(Oxidation (M))|F}Y{I|L};[KS]EPVKSEC(Carbamidomethyl (C)){I|L};QYESKV{I|L}[Y{M(Oxidation (M))|F}];[KS]EPVKSE[CG]{I|L};[KS]E[YQ]V{M(Oxidation (M))|F}Y{I|L};[NS][TA][YV]V{M(Oxidation (M))|F}Y{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}[RV]EC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}ESKPDSK{I|L};Q[{I|L}A]EVKSEC(Carbamidomethyl (C)){I|L} 6.6948;5.9506;4.9961;4.5077;4.2165;3.5615;2.9907;2.9711;2.9404;2.7735 +;+;-;-;-;-;-;-;-;- + 6291 NaN NaN 588286.6 NaN 9834 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12714 57.874 NaN 208590 35 0 18681 0.261 + 31658 VYKAFVMETF 10 65 625.8099156559057 1249.6052783786113 2 625.809814453125 MULTI HCD FTMS 0 0 0 12712 102357.390625 0.3974731720126864 10 -0.28539276123046875 2 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 87.25819977447905 0.0012128544035916314 1 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 107.78 0 0 8.6255 8.6255 97.538 0 0 0 8.183728447993346 8.183728447993346 8.183728447993346 59.92011641478463 0 3.1861818737241734 2 0.3807196863200844 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]K{[YC]|[HE]}VVET{M(Oxidation (M))|F};[RP][WM][RK]ET{M(Oxidation (M))|F} 8.6255;3.8304;0.14745 +;-;- + 182 NaN NaN 112537.2 NaN 9835 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12715 57.878 NaN 320180 35 0 59562 0.263 -1 MPSEDVVSL 9 59 496.7342185425719 991.4538841519438 2 496.7340393066406 MULTI HCD FTMS 0 0 0 12712 127756.84375 0.7870701391516673 -7 0.2035369873046875 3 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF 26.88365393820708 0.12808753336095696 1 VS{I|L} 3 -1 40.005 0 0 4.035 0 0 674.2573719709 0 674.2573719709 0 17.95371572735597 0 0 0 1 0 0.3807196863200844 0 VS{I|L} 4.035 + + 76 NaN NaN 129556 NaN 9836 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12716 57.881 NaN 290140 35 0 26588 0.261 + 18138 MPDFDVARI 9 72 540.2630707669418 1078.5115886006836 2 540.2631225585938 MULTI HCD FTMS 0 0 0 12712 77891.8984375 0.5363820893274083 -6 0.17392730712890625 4 Oxidation (M) _M(Oxidation (M))PDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 51.41523569358685 0.02959097413485123 1 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L} 9 0 + 71.15 0 0 6.5971 6.5971 93.826 0 0 0 53.1914468044949 13.142492736872597 13.142492736872597 49.46517541959466 0 1.805462187404089 0 0 0.3252574989159953 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VVDPE 6.5971;2.0106 +;- + 124 + NaN NaN 128166.3 NaN 9837 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12717 57.884 NaN 283810 35 0 63492 0.261 + 13133 KYLLHSLVF 9 57 560.3317473555778 1118.6489417779555 2 560.3319091796875 MULTI HCD FTMS 0 0 0 12712 74251.7421875 0.46949449117653624 -4 0.11481857299804688 5 Unmodified _KYLLHSLVF_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 47.748688679222035 0.03472022231463587 1 {I|L}HVTV{M(Oxidation (M))|F} 6 5 65.75 0 0 5.8777 0 0 404.24351699043126 0 404.24351699043126 0 60.26593150440647 0 0 0 2 0 0.7614393726401688 0 {I|L}HVTV{M(Oxidation (M))|F} 5.8777 - 48 NaN NaN 138992.4 NaN 9838 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12718 57.888 NaN 198930 35 0 15655 0.261 + 12010 KGRLTPYADGF 11 56 612.8221746778888 1223.6297964225776 2 612.8221435546875 MULTI HCD FTMS 0 0 0 12712 47787.0390625 0.8567273910930053 -2 0.05234527587890625 6 Unmodified _KGRLTPYADGF_ APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant 10.150570793230772 0.3686401556411756 1 V{I|L}NAT{[MS]|[{M(Oxidation (M))|F}A]} 7 8 65.221 0 0 5.3301 0 0 489.2705728761614 0 489.2705728761614 0 58.23145724778165 0 0 0 2.6237125054200234 0 0 0.4247425010840047 V{I|L}NAT{[MS]|[{M(Oxidation (M))|F}A]} 5.3301 - 75 NaN NaN 114935.5 NaN 9839 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12719 57.891 NaN 110630 35 0 12288 0.264 -1 CLEMFICWL 9 56 405.51818816609375 1213.5327350984812 3 405.51861572265625 MULTI HCD FTMS 0 0 0 12712 24953.798828125 0.5272147020595233 -2 0.05234527587890625 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))LEMFICWL_ ENST00000528150.1_1_1:78206598-78225465:-|nuORF 5.731851221503515 0.3075653528928475 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}P 3 -1 25.062 0 0 2.0652 0 0 0 840.3458203858437 840.3458203858437 10.457574905606748 0 0 0 0 0 1.6989700043360187 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}P 2.0652 - 18 NaN NaN 88936.9 NaN 9840 2877 12712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12721 57.896 NaN 384520 35 0 40657 0.327 + 28017 TFTFSHATF 9 74 529.7509545642309 1057.4873561952618 2 529.7510375976562 MULTI HCD FTMS 0 0 0 12720 116737.6953125 0.14763225426597854 15 -0.36571502685546875 1 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 58.678817012210395 0.019429721296335044 1 [{M(Oxidation (M))|F}T]TG[HT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 3 + 59.258 0 0 5.6036 5.6036 83.154 0 0 0 17.86098023303616 44.793936045310744 17.86098023303616 1.6378675338813622 0 1.8807196863200843 1.2218487496163564 1.0941876774005248 0 [{M(Oxidation (M))|F}T]TG[HT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]TG[WQ]AT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]TG[NS]{[RE]|[WV]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T[YN]WN{I|L};[{M(Oxidation (M))|F}T]TG[YG]WN{I|L};[YT]AA[HT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YT]AA[WQ]AT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T[YN]WGG{I|L};[{M(Oxidation (M))|F}T]TG[YG]WGG{I|L} 5.6036;5.4488;3.7721;2.5606;2.4374;2.0141;1.8592;1.6848;1.5666 -;-;-;-;-;-;-;-;- 1019 NaN NaN 146291 NaN 9841 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12722 57.9 NaN 178040 35 0 22405 0.261 + 16510 LTHYLLPY 8 56 510.28137318349826 1018.5481934337965 2 510.281494140625 MULTI HCD FTMS 0 0 0 12720 61037.58984375 0.5565335394164612 5 -0.147705078125 2 Unmodified _LTHYLLPY_ ENSG00000172992|ENST00000651974|DCAKD 19.438996006549623 0.45076845602799126 1 {I|L}{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.5539 0 0 627.3335438459 0 627.3335438459 0 15.740312677277188 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L} 3.5539 - 87 NaN NaN 112271.6 NaN 9842 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12723 57.904 NaN 274730 35 0 21376 0.261 + 15277 LPADEVDTQL 10 59 550.7769529303312 1099.5393529274622 2 550.77734375 MULTI HCD FTMS 0 0 0 12720 38755.03515625 0.5830457857143193 1 -0.02618408203125 3 Unmodified _LPADEVDTQL_ ENSG00000204392|ENST00000375661|LSM2;ENST00000470083.5_1_6:31765536-31774578:-|nuORF 31.26834338654808 0.2211790902911672 1 DTQ{I|L} 4 6 33.493 0 0 3.0461 0 0 624.3124867169937 0 624.3124867169937 0 12.779419084123234 0 0 0 0.6549471895720984 0 0.7302046884880937 0 + DTQ{I|L} 3.0461 + + 395 NaN NaN 119891.1 NaN 9843 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12724 57.907 NaN 301100 35 0 61898 0.261 + 10597 IPMPTPPW 8 52 469.7439900962782 937.4734272593564 2 469.7436828613281 MULTI HCD FTMS 0 0 0 12720 118348.125 0.20897936858889676 -5 0.14107894897460938 4 Unmodified _IPMPTPPW_ ENST00000462730.5_1_X:48664727-48664964:+|nuORF 28.173230860318316 0.38285857429842723 1 {I|L}PTD 4 5 63.914 0 0 6.8177 0 0 0 508.2379244440063 508.2379244440063 50.41956270212445 0 0 0 0 0.8252574989159953 1.5228787452803376 0.8494850021680094 0 {I|L}PTD 6.8177 - 30 + NaN NaN 130470.5 NaN 9844 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12725 57.91 NaN 158410 35 0 29334 0.261 + 29704 VDDEGCDLVIR 11 49 617.2922786431162 1232.5700043530323 2 617.2933959960938 MULTI HCD FTMS 0 0 0 12720 37022.390625 0.6526177058716597 1 -0.02618408203125 5 Unmodified _VDDEGCDLVIR_ REV__ENSG00000005961|ENST00000262407|ITGA2B;REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF;REV__nc|ENSG00000005961|P08514-2|ITGA2B;REV__nc|ENSG00000005961|P08514-3|ITGA2B 4.897010918128616 0.3974440401582579 1 {I|L}RV{I|L} 4 -1 38.928 0 0 3.1583 0 0 733.2254505841812 0 733.2254505841812 0 34.94850021680094 0 0 0 1 0 0 0 {I|L}RV{I|L} 3.1583 - 11 NaN NaN 106436.7 NaN 9845 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12726 57.914 NaN 91466 35 0 8166.5 0.264 + 21615 PYPFTHHWQF 10 48 453.88038074765984 1358.6193128431796 3 453.8810729980469 MULTI HCD FTMS 0 0 0 12720 23499.302734375 0.0823967569230122 28 -0.7118988037109375 6 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 15.738622578938676 0.3638982514236938 1 {M(Oxidation (M))|F} 1 9 20.485 0 0 1.5077 0 0 1193.540300857631 0 1193.540300857631 0 13.494850021680094 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.5077 + + 7 + NaN NaN 97036.4 NaN 9846 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12727 57.917 NaN 125350 35 0 16553 0.261 -1 0 53 442.23355464635773 441.22627817975774 1 442.2338562011719 MULTI HCD FTMS 0 0 0 12720 29035.61328125 0.08849207543496748 14 -0.3586235046386719 7 NaN NaN 1 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 + 30.915 0 0 7.0066 7.0066 90.901 0 0 0 10.457574905606748 10.457574905606748 10.457574905606748 10.457574905606748 0 0 1.5228787452803376 0 0 [Y{I|L}]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L} 7.0066;4.6365 -;- 9 NaN NaN 102668.2 NaN 9847 2878 12720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12729 57.922 NaN 485390 35 0 66615 0.326 + 7462 FVVEHDFIM 9 96 576.7735754858928 1151.5325980385855 2 576.7741088867188 MULTI HCD FTMS 0 0 0 12728 185364.609375 0.435626323586566 4 -0.12152099609375 1 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 85.35673624503755 0.00464763827098139 1 NVE[HD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 57.687 0 0 5.0096 0 0 132.1121699885686 0 132.1121699885686 0 47.51016889216956 0 0 0 2.2856668758921828 0 0.6861818737241735 0 NVE[HD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.0096 - 509 + NaN NaN 163747.3 NaN 9848 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12730 57.926 NaN 221900 35 0 24599 0.261 + 29450 TYTSYLDKF 9 69 569.2767270258796 1136.5389011185591 2 569.2771606445312 MULTI HCD FTMS 0 0 0 12728 74633.25 0.3896962198505269 5 -0.14437484741210938 2 Unmodified _TYTSYLDKF_ ENSG00000069956|ENST00000261845|MAPK6 71.70789743142352 0.008535567138151097 1 [YT]TSY{I|L}DK{M(Oxidation (M))|F} 9 0 + 70.312 0 0 6.1865 6.1865 87.048 0 0 0 27.14764271519251 8.310384486277805 8.310384486277805 8.310384486277805 0 2.0183115237025655 2 0.3807196863200844 0 + + [YT]TSY{I|L}DK{M(Oxidation (M))|F};[YT]TSY{I|L}{I|L}[YN];[YT]TSV[YE]K{M(Oxidation (M))|F};[YT]TSY{I|L}[TA]A{M(Oxidation (M))|F};[YT]TSYA[{I|L}T]A{M(Oxidation (M))|F};[YT]TS[KA][HA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EP]DK{M(Oxidation (M))|F};[YT][W{M(Oxidation (M))|F}]{I|L}D[RH] 6.1865;5.4553;4.548;3.6126;2.8264;2.322;1.9337;1.5709 +;-;-;-;-;-;-;- + 363 + NaN NaN 123187.5 NaN 9849 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12731 57.93 NaN 145620 35 0 20287 0.263 -1 0 44 424.08158163941823 NaN 0 424.0815124511719 PEAK HCD FTMS 0 0 0 12728 60439.0625 0.37430597212576394 413 -10.732540130615234 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 1.2591 0 0 0.1488 0 0 416.9354583454396 279.1130770318969 696.0485353773365 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.1488 - 1 + NaN NaN 112599.3 NaN 9850 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12732 57.933 NaN 207830 35 0 31265 0.261 + 8422 GYSEHFVEF 9 56 557.7455165912979 1113.4764802493958 2 557.74658203125 MULTI HCD FTMS 0 0 0 12728 79979.765625 0.017081406472564967 34 -0.8826141357421875 4 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 28.486842064014134 0.11819662193267319 1 E{M(Oxidation (M))|F} 2 7 34.464 0 0 3.0952 0 0 819.3559185812302 0 819.3559185812302 0 29.85985638199878 0 0 0 1 0 0.5 0 + E{M(Oxidation (M))|F} 3.0952 + + 25 + NaN NaN 119267.9 NaN 9851 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12733 57.937 NaN 259700 35 0 40107 0.261 -1 SADMRPYN 8 46 485.2087388152473 968.4029246972946 2 485.20849609375 MULTI HCD FTMS 0 0 0 12728 108519.40625 0.34435078627741755 -4 0.10478973388671875 5 Oxidation (M) _SADM(Oxidation (M))RPYN_ ENSG00000159069|ENST00000325285|FBXW5;nc|ENSG00000159069|Q969U6-2|FBXW5 6.723162845929126 0.5320176132289695 1 SAV 3 -1 21.682 0 0 2.239 0 0 0 708.2161745600328 708.2161745600328 11.549924191584537 0 0 0 0 0 0 0 0 SAV 2.239 - 5 + NaN NaN 126703.8 NaN 9852 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12734 57.94 NaN 137410 35 0 9153.9 0.261 -1 TYTWMLIF 8 56 545.7654812579935 NaN 0 545.7662963867188 PEAK HCD FTMS 0 0 0 12728 7553.60986328125 0.13814176145443594 1 -0.029582977294921875 6 Oxidation (M) _TYTWM(Oxidation (M))LIF_ ENSG00000112499|ENST00000366953|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;nc|ENSG00000112499|O15244-3|SLC22A2 10.183394434864962 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.64154 0 0 64.00477325422123 923.4063673291971 987.4111405834184 0 0 0 0 0 0 0 0 0 V 0.64154 - 71 + NaN NaN 105847 NaN 9853 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12735 57.943 NaN 130520 35 0 14754 0.261 -1 YPLILIIMML 10 50 618.3610408067301 1234.70752868026 2 618.361083984375 MULTI HCD FTMS 0 0 0 12728 28446.40625 0.529889200513657 3 -0.092010498046875 7 Oxidation (M) _YPLILIIM(Oxidation (M))ML_ tr|U7T6Y8|U7T6Y8_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00056PE=4SV=1 4.3292370932331545 0.45238836448149167 1 {I|L}R[{I|L}V] 4 -1 10.802 0 0 0.87486 0 0 735.3598246781102 0 735.3598246781102 0 3.895840698002999 0 0 0 0 0 0 0 {I|L}R[{I|L}V] 0.87486 - 19 + NaN NaN 115479.3 NaN 9854 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12736 57.947 NaN 79859 35 0 7150.5 0.264 + 2176 DIEINGVF 8 41 453.7314879597252 NaN 0 453.5426330566406 PEAK HCD FTMS 0 0 0 12728 20405.794921875 0.9372470069639328 -5 0.13772201538085938 8 Unmodified _DIEINGVF_ ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43 5.760428011301431 0.38822285293237185 1 N 1 7 2.2185 0 0 0.24502 0 0 470.2359728903504 318.14353357486567 788.3795064652161 0 0 0 0 0 0 0 0 0 + N 0.24502 + + 3 + NaN NaN 98715.9 NaN 9855 2879 12728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12738 57.952 NaN 5788000 35 0 1092200 0.327 + 12640 KWFFQKLRF 9 119 433.9166464909982 1298.7281100731946 3 433.91705322265625 MULTI HCD FTMS 0 0 0 12737 2924376.25 0.8484165496823017 1 -0.036224365234375 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 137.42381684818497 0.00015474832393368816 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 99.541 0 0 7.6645 7.6645 87.246 0 0 0 14.096722216725311 2.632414347745822 2.632414347745822 2.632414347745822 0 1.9749073637206092 0 0 2.022878745280338 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F} 7.6645;7.4618;7.1489;7.0039;6.9555;6.8013;6.7528;6.4884;6.4399;6.2949 +;-;-;-;-;-;-;-;-;- + 5472 + NaN NaN 599530.1 NaN 9856 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12739 57.956 NaN 1200300 35 0 102560 0.261 + 12819 KYELDFSHF 9 99 593.2823792333921 1184.5502055335842 2 593.2826538085938 MULTI HCD FTMS 0 0 0 12737 682663.375 0.5834876819543741 2 -0.062427520751953125 2 Unmodified _KYELDFSHF_ ENSG00000137462|ENST00000642700|TLR2 193.2943466776899 1.661812519250559E-13 1 KYE{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F} 9 0 + 94.017 0 0 7.9369 7.9369 86.938 0 0 0 1.0916487934724586 1.0916487934724586 1.0916487934724586 1.0916487934724586 0 2.690614065464281 0 1.5506484875809043 0 + + KYE{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YK]E{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YE]K{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YK]E{I|L}DAYH{M(Oxidation (M))|F};[YE]K{I|L}DAYH{M(Oxidation (M))|F};[YE]{I|L}KD{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};{M(Oxidation (M))|F}[TA]T{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YE]{I|L}KDAYH{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[CA]|SS}{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YKD{M(Oxidation (M))|F}SH{M(Oxidation (M))|F} 7.9369;7.8447;7.6144;7.2116;6.9813;6.3299;5.8297;5.6967;5.502;5.4039 +;+;-;-;-;-;-;-;-;- + 4012 + NaN NaN 271378.2 NaN 9857 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12740 57.96 NaN 1439300 35 0 527040 0.263 + 16097 LPTDSATVL 9 72 458.7529852944324 915.4914176556648 2 458.7530517578125 MULTI HCD FTMS 0 0 0 12737 1124746.625 0.5082637448248507 -4 0.1081695556640625 3 Unmodified _LPTDSATVL_ ENSG00000196878|ENST00000356082|LAMB3 85.27202061508552 0.004649858145912257 1 {[TV]|[{I|L}S]}[EP]SATV{I|L} 9 3 + 77.258 0 0 8.439 8.439 97.6 0 0 0 7.87787469514015 63.76000855411611 7.87787469514015 77.25826545818343 0 2.2614393726401687 1.2218487496163564 1.2302046884880937 0 {[TV]|[{I|L}S]}[EP]SATV{I|L} 8.439 - 137 NaN NaN 300406.9 NaN 9858 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12741 57.963 NaN 695760 35 0 125010 0.261 + 5704 FPAGYMYPSM 10 95 598.2433088441734 1194.4720647551467 2 598.2437133789062 MULTI HCD FTMS 0 0 0 12737 291179.1875 0.7931096736521837 4 -0.1147918701171875 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 125.62461146993168 2.8380270204069364E-05 1 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 61.921 0 0 5.184 0 0 64.00047930130638 0 64.00047930130638 0 47.85310187473284 0 0 0 1.4247425010840047 0 2.0673851849885576 0 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.184 - 1768 + NaN NaN 188524.4 NaN 9859 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12742 57.966 NaN 432780 35 0 43668 0.261 + 19455 NPSVREFVL 9 88 530.7929472343349 1059.5713415354696 2 530.7932739257812 MULTI HCD FTMS 0 0 0 12737 132208.84375 0.005052602162552511 52 -1.3728065490722656 5 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 49.52724829834842 0.03223213920720493 1 NE{M(Oxidation (M))|F}V{I|L} 5 4 34.285 0 0 3.2357 0 0 439.2549000470719 0 439.2549000470719 0 8.648481219398079 0 0 0 0.3807196863200844 0 0 0.805462187404089 NE{M(Oxidation (M))|F}V{I|L} 3.2357 - 219 NaN NaN 138308.1 NaN 9860 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12743 57.97 NaN 347580 35 0 34201 0.261 + 7942 GDTWQSVVSW 10 80 582.7692560816736 1163.523959230147 2 582.7696533203125 MULTI HCD FTMS 0 0 0 12737 149624.671875 0.01591790437842535 66 -1.7189559936523438 6 Unmodified _GDTWQSVVSW_ REV__ENSG00000171596|ENST00000305141|NMUR1 20.41453444215458 0.3201613495159799 1 SVS[YT]VSW 8 -1 51.834 0 0 4.4549 0 0 236.07838964418823 0 236.07838964418823 0 39.922750325201406 0 0 0 2.1237125054200234 0 0.3252574989159953 0 SVS[YT]VSW 4.4549 - 595 + NaN NaN 131089.8 NaN 9861 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12744 57.973 NaN 301440 35 0 119730 0.264 + -1 CLLPRRYPF 9 51 407.88994171490526 1220.6479957449158 3 407.89031982421875 MULTI HCD FTMS 0 0 0 12737 69190.5859375 0.36320252419417215 12 -0.3028564453125 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLPRRYPF_ REV__ENST00000367350.4_1_1:200587964-200589848:-|nuORF 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1964 0 0 1055.5693041939376 0 1055.5693041939376 0 2.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1964 + + 9 + NaN NaN 146462.2 NaN 9862 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12745 57.976 NaN 644230 35 0 117890 0.261 + 35930 YYTPITPHL 9 75 552.7900492265642 1103.5655455199283 2 552.7899780273438 MULTI HCD FTMS 0 0 0 12737 141772.421875 0.23112175051724163 -4 0.1081695556640625 8 Unmodified _YYTPITPHL_ ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|9|fusion 57.47134341890925 0.0211188941628804 1 C(Carbamidomethyl (C))TP{I|L}TP[H{I|L}] 8 2 40.655 0 0 3.6839 0 0 166.09735811934075 0 166.09735811934075 0 22.695859695405858 0 0 0 1.305462187404089 0 0.5 0 C(Carbamidomethyl (C))TP{I|L}TP[H{I|L}] 3.6839 - 249 + NaN NaN 182284.2 NaN 9863 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12746 57.98 NaN 116060 35 0 6867.6 0.261 -1 QYFDSRGMFI 10 45 640.2928404276222 1278.5711279220443 2 640.2919921875 MULTI HCD FTMS 0 0 0 12737 61154.734375 0.9146544762684631 3 -0.09193801879882812 9 Oxidation (M) _QYFDSRGM(Oxidation (M))FI_ ENSG00000151353|ENST00000281017|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.54668 0 0 148.1180772402068 980.3534892525973 1128.4715664928042 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54668 + + 8 + NaN NaN 103069 NaN 9864 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12747 57.983 NaN 152500 35 0 6969.1 0.261 + 19987 NYIDKVRFL 9 71 584.3297444800203 NaN 0 584.3440551757812 PEAK HCD FTMS 0 0 0 12737 21708.654296875 0.6108391832447589 2 -0.062427520751953125 10 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 24.990960013464015 0.1538978316896649 1 {I|L}DKV 4 5 26.714 0 0 2.2899 0 0 277.1080022578174 431.24152551822505 708.3495277760425 0 0 0 0 0 1.079689690656103 0 0 0 + {I|L}DKV 2.2899 + + 104 + NaN NaN 110380.8 NaN 9865 2880 12737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12749 57.988 NaN 1907500 35 0 213790 0.327 + 24594 RYLPKGFLNQF 11 85 461.59064942167277 1381.7501188652184 3 461.5908203125 MULTI HCD FTMS 0 0 0 12748 568847.6875 0.9784571069691379 -2 0.06580734252929688 1 Unmodified _RYLPKGFLNQF_ ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 72.58957779350692 0.01281655219402766 1 [YR]{I|L}[KP]{[CT]|[{M(Oxidation (M))|F}G]}{I|L}NQ{M(Oxidation (M))|F} 11 0 + 60.163 0 0 4.3541 4.3541 90.349 0 0 0 3.872735630574091 32.14265737770159 3.872735630574091 60.16312622651096 0 1.860924374808178 0 0.3807196863200844 0.8494850021680094 + + [YR]{I|L}[KP]{[CT]|[{M(Oxidation (M))|F}G]}{I|L}NQ{M(Oxidation (M))|F} 4.3541 + + 286 NaN NaN 376930.6 NaN 9866 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12750 57.992 NaN 1130500 35 0 164270 0.261 -1 DPRNATSVCI 10 98 566.7738872279571 1131.533221522714 2 566.7748413085938 MULTI HCD FTMS 0 0 0 12748 397642.625 0.00927001049245242 67 -1.7215080261230469 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 1 MSSY{I|L}SVSW 9 -1 73.194 0 0 6.4686 0 0 73.05878552025008 0 73.05878552025008 0 38.3686903766792 0 0 0 1 0 1.6641478515490356 0 MSSY{I|L}SVSW 6.4686 - 5995 + NaN NaN 257449.8 NaN 9867 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12751 57.996 NaN 1993600 35 0 129340 0.261 + 15736 LPFDKETGF 9 124 527.2660670599716 1052.5175811867432 2 527.2662963867188 MULTI HCD FTMS 0 0 0 12748 290469.46875 0.43624662126771874 4 -0.1114349365234375 3 Unmodified _LPFDKETGF_ ENSG00000119705|ENST00000557342|SLIRP;nc|ENSG00000119705|Q9GZT3-2|SLIRP 37.07464296494664 0.07877380486334713 1 {I|L}P{M(Oxidation (M))|F}D[KT]W 7 3 44.562 0 0 4.2339 0 0 0 162.05622278385002 162.05622278385002 11.010460871743945 0 0 0 0 1.0897803053245956 1.3979400086720375 0 0 {I|L}P{M(Oxidation (M))|F}D[KT]W 4.2339 - 2324 + NaN NaN 389932.8 NaN 9868 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12752 57.999 NaN 691350 35 0 193350 0.261 + 31991 VYPLMKEYF 9 60 603.2993627880326 1204.584172642865 2 603.2994384765625 MULTI HCD FTMS 0 0 0 12748 346105.875 0.10219174844426702 37 -0.9573898315429688 4 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 43.77239144664712 0.04802738721622131 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 56.655 0 0 4.7033 4.7033 82.289 0 0 0 3.493624753846092 25.73522823119241 3.493624753846092 3.0372751160733458 0 1.6989700043360187 2 0 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}[{I|L}P]P{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV][{I|L}P]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP{I|L}[{M(Oxidation (M))|F}T][{M(Oxidation (M))|F}T]A{M(Oxidation (M))|F};VYP{I|L}[{M(Oxidation (M))|F}T][YG][{M(Oxidation (M))|F}V];[YV]P{I|L}{M(Oxidation (M))|F}[YQ][Y{I|L}] 4.7033;4.4512;3.7672;3.7566;3.5622;3.5151;3.503;3.4902;3.2556;1.6896 -;+;-;-;-;-;-;-;-;- + 239 NaN NaN 191335.9 NaN 9869 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12753 58.002 NaN 718900 35 0 77990 0.264 + -1 LRHMQLLNKF 10 85 439.2483207060336 1314.7231327183008 3 439.2483215332031 MULTI HCD FTMS 0 0 0 12748 189360.34375 0.5759489802775434 3 -0.0785675048828125 5 Oxidation (M) _LRHM(Oxidation (M))QLLNKF_ REV__ENSG00000115970|ENST00000405975|THADA;REV__ENST00000408045.7_1_2:43571220-43805671:-|nuORF;REV__nc|ENSG00000115970|Q6YHU6-2|THADA;REV__nc|ENSG00000115970|Q6YHU6-3|THADA;REV__nc|ENSG00000115970|Q6YHU6-5|THADA;REV__nc|ENSG00000115970|Q6YHU6-6|THADA 8.97624648632007 0.42715123575657504 1 K[WY]{M(Oxidation (M))|F}Q[K{I|L}]R{M(Oxidation (M))|F} 9 -1 + 54.609 0 0 4.1537 4.1537 81.336 0 0 0 39.67420967618249 0.44022814763920337 0.44022814763920337 2.887254899964354 0 1.926935982160881 0 0 0.4247425010840047 K[WY]{M(Oxidation (M))|F}Q[K{I|L}]R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}[WY]Q[K{I|L}]R{M(Oxidation (M))|F};[WY]K{M(Oxidation (M))|F}Q[R{I|L}]{M(Oxidation (M))|F}K;[WY]K{M(Oxidation (M))|F}Q[R{I|L}]K{M(Oxidation (M))|F};[WY]K{M(Oxidation (M))|F}[AG][R{I|L}]{M(Oxidation (M))|F}K;[WY]K{M(Oxidation (M))|F}[AG][R{I|L}]K{M(Oxidation (M))|F} 4.1537;3.9341;3.8025;3.4275;3.1021;2.7271 -;-;-;-;-;- 402 + NaN NaN 186616.8 NaN 9870 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12754 58.006 NaN 663150 35 0 132580 0.261 -1 HFDMAVYL 8 66 506.23375482749594 1010.4529567217919 2 506.23406982421875 MULTI HCD FTMS 0 0 0 12748 233726.75 0.4187118783133593 18 -0.41332244873046875 6 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 VY{I|L} 3 -1 30.93 0 0 3.061 0 0 617.227342674025 0 617.227342674025 0 14.960762528683702 0 0 0 0.7742275032520141 0 0 0 VY{I|L} 3.061 + + 117 NaN NaN 199629.1 NaN 9871 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12755 58.009 NaN 274400 35 0 39903 0.261 + 7463 FVVEHDFIM 9 76 576.7735754858928 1151.5325980385855 2 577.2753295898438 MULTI HCD FTMS 0 0 0 12748 67483.734375 0.24295169023753577 7 -0.19334793090820312 7 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 50.855029805455786 0.030374663808198754 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 32.435 0 0 2.8167 0 0 726.3380106393454 0 726.3380106393454 0 3.4948500216800937 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.8167 + + 87 NaN NaN 133051.3 NaN 9872 2881 12748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12757 58.014 NaN 1289700 35 0 75821 0.327 + 22738 QYESKVFYL 9 119 588.8005989090054 1175.5866448848108 2 588.8009643554688 MULTI HCD FTMS 0 0 0 12756 716892.9375 0.2915330104709327 6 -0.167144775390625 1 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 171.0860797660465 3.235337749433058E-09 1 [YQ]ESKV{M(Oxidation (M))|F}Y{I|L} 9 0 + 73.522 0 0 6.2541 6.2541 87.095 0 0 0 8.072866634521532 8.072866634521532 8.072866634521532 8.072866634521532 0 2.579689690656103 0.9208187539523752 1.8371804965004639 2.4035984316004217 + + [YQ]ESKV{M(Oxidation (M))|F}Y{I|L};QYESKV{M(Oxidation (M))|F}Y{I|L};QYESKV[Y{I|L}]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VKSEQY{I|L};[{M(Oxidation (M))|F}V]{[CA]|SS}SKV{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VSKEQY{I|L};[Y{M(Oxidation (M))|F}]VKSE[AG]Y{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}ESK[QT][TP]{I|L};Q[{I|L}A]EVKSEC(Carbamidomethyl (C)){I|L};[{M(Oxidation (M))|F}V]{[CA]|SS}SKVE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.2541;5.5674;4.7336;3.6269;3.19;3.1148;2.8436;2.5105;2.4716;2.3578 +;+;-;-;-;-;-;-;-;- + 3638 NaN NaN 287567.2 NaN 9873 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12758 58.018 NaN 2183800 35 0 173300 0.261 + 2685 DVHGPDWNL 9 120 526.7433314658365 1051.472109998473 2 526.7435913085938 MULTI HCD FTMS 0 0 0 12756 1113623.125 0.622810912778502 -3 0.092010498046875 2 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 99.75527289724121 0.004270341300239591 1 [DV]HGPDWN{I|L} 9 0 + 74.302 0 0 7.0665 7.0665 91.667 0 0 0 20.112302888611623 12.737190586435354 12.737190586435354 12.737190586435354 0 1.8243923658886187 1.6989700043360187 0.9749073637206092 0.4247425010840047 + + [DV]HGPDWN{I|L};[DV]HGPDWQV;[DV]HGPDWGG{I|L};[DV]HGPWDN{I|L};[DV]HGPDW{I|L}N;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWN{I|L};[DV]HGPD{I|L}WN;[DV]HGPDW[AG]V;[HV]DGPDWN{I|L};[DV]HGPWDQV 7.0665;5.8551;5.7868;5.765;5.6721;5.1537;4.8345;4.7604;4.5712;4.5537 +;-;-;-;-;-;-;-;-;- + 6503 NaN NaN 417049.3 NaN 9874 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12759 58.022 NaN 704070 35 0 89857 0.261 + 29700 VDCPETGHNL 10 79 542.7386569826406 1083.462761032081 2 542.7384643554688 MULTI HCD FTMS 0 0 0 12756 260324.53125 0.5920585378819996 -3 0.092010498046875 3 Unmodified _VDCPETGHNL_ FAM135B|p.A418E|1|0.43|ENSG00000147724|chr8:138167900-138167900|G/T|missense_variant 34.40172386719151 0.19398797222092762 1 [DV]HGPD{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 10 6 + 54.217 0 0 5.0041 5.0041 88.198 0 0 0 14.928250627301836 37.76380164484536 14.928250627301836 13.411964496339301 0 1.274227503252014 1.154901959985743 0.3494850021680094 0.4247425010840047 [DV]HGPD{[MS]|[{M(Oxidation (M))|F}A]}N{I|L};[DV]HGPD{[MS]|[{M(Oxidation (M))|F}A]}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YN]D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[YD]|[{M(Oxidation (M))|F}M]}N{[MS]|[{M(Oxidation (M))|F}A]}N{I|L};[DV]HGPD[KC][DV] 5.0041;3.7662;2.3188;2.2294;1.9679;1.6112 -;-;-;-;-;- 629 NaN NaN 185202 NaN 9875 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12760 58.025 NaN 639000 35 0 210780 0.261 + 1604 AYVPGFAHI 9 61 487.75856371403296 973.5025744948659 2 487.7585144042969 MULTI HCD FTMS 0 0 0 12756 264109.90625 0.6707877921073957 -3 0.092010498046875 4 Unmodified _AYVPGFAHI_ ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF 28.173230860318316 0.11963627304438548 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VP 4 5 40.49 0 0 4.1592 0 0 0 540.2562349908811 540.2562349908811 33.499934467764874 0 0 0 0 1.2302046884880937 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VP 4.1592 + + 37 + NaN NaN 176087.6 NaN 9876 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12761 58.029 NaN 366300 35 0 21357 0.261 + 21301 PSDAVVSSYST 11 79 556.759377162956 1111.5042013927118 2 556.759033203125 MULTI HCD FTMS 0 0 0 12756 118810.9453125 0.6764592481791897 -3 0.092010498046875 5 Unmodified _PSDAVVSSYST_ REV__ENSG00000088038|ENST00000221232|CNOT3 20.41453444215458 0.279209903849948 1 [DP]SAK{I|L}{M(Oxidation (M))|F}[MT]C 10 -1 + 78.554 0 0 7.0674 7.0674 86.4 0 0 0 10.228787452803374 3.0102999566398125 3.0102999566398125 3.0102999566398125 0 2.1989700043360187 1.6989700043360187 0.8494850021680094 0.4247425010840047 [DP]SAK{I|L}{M(Oxidation (M))|F}[MT]C;[DP]SAK{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F};[PS]DAK{I|L}{M(Oxidation (M))|F}[MT]C;[PS]DAK{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F};[DP]S[K{I|L}]A{M(Oxidation (M))|F}[MT]C;[DP]S[K{I|L}]A{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F};[PS]D[K{I|L}]A{M(Oxidation (M))|F}[MT]C;[PS]D[K{I|L}]A{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F} 7.0674;6.7966;6.1471;5.8763;4.7179;4.447;3.7976;3.5268 -;-;-;-;-;-;-;- 744 NaN NaN 149192.2 NaN 9877 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12762 58.032 NaN 277490 35 0 68119 0.261 -1 MPSEDVVSL 9 48 496.7342185425719 991.4538841519438 2 496.7340087890625 MULTI HCD FTMS 0 0 0 12756 150219.828125 0.9254575923701411 -2 0.062427520751953125 6 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF 20.453626601364224 0.18364154288633264 1 VS{I|L} 3 -1 40.005 0 0 4.035 0 0 674.2579921708715 0 674.2579921708715 0 40.00508444608478 0 0 0 1 0 0.3807196863200844 0 VS{I|L} 4.035 + + 8 NaN NaN 120443.4 NaN 9878 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12763 58.035 NaN 168440 35 0 12837 0.261 -1 EYMEHVYLI 9 59 606.7841215460777 NaN 0 606.7841186523438 PEAK HCD FTMS 0 0 0 12756 59889.65234375 0.0704877394948575 29 -0.7347908020019531 7 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 23.1484247019978 0.16626532474190622 1 VVTP 4 -1 12.652 0 0 1.0442 0 0 164.0444871333678 648.2300509088499 812.2745380422177 0 0 0 0 0 0 0 0 0 VVTP 1.0442 - 27 + NaN NaN 105871 NaN 9879 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12764 58.039 NaN 281190 35 0 50778 0.264 + 18674 MYIRYLYKL 9 53 421.5702412988453 1261.6888944967359 3 421.5702819824219 MULTI HCD FTMS 0 0 0 12756 66416.6015625 0.8767813936794946 -5 0.1444549560546875 8 Unmodified _MYIRYLYKL_ DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2;ENSG00000150760|ENST00000623213|DOCK1;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1 12.240655878213236 0.2545997876781172 1 MY 2 7 45.217 0 0 3.5838 0 0 0 964.5630894453692 964.5630894453692 28.226825097560422 0 0 0 0 0.4247425010840047 2 0 0 + MY 3.5838 + + 18 + NaN NaN 137089.1 NaN 9880 2882 12756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12766 58.043 NaN 910030 35 0 176680 0.327 + 31395 VYAILTHGI 9 65 493.78721393950485 985.5598749458097 2 493.7872619628906 MULTI HCD FTMS 0 0 0 12765 442370.1875 0.7915193781215759 -2 0.055713653564453125 1 Unmodified _VYAILTHGI_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 131.29775728308752 0.0005262696486345744 1 VYA{I|L}{I|L}THG{I|L} 9 0 + 107.87 0 0 10.945 10.945 96.241 0 0 0 82.21008436253157 7.504311474114331 7.504311474114331 13.749387366082999 0 3.048455006504028 1.6989700043360187 1.055462187404089 0 + + VYA{I|L}{I|L}THG{I|L};[YV]A{I|L}{I|L}THG{I|L};[YV]VVVTHG{I|L} 10.945;9.5502;6.5346 +;+;- + 201 + NaN NaN 218255.1 NaN 9881 2883 12765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12767 58.048 NaN 303920 35 0 52682 0.261 + 13134 KYLLHSLVF 9 67 560.3317473555778 1118.6489417779555 2 560.3321533203125 MULTI HCD FTMS 0 0 0 12765 91220.09375 0.5767855438608416 2 -0.055721282958984375 2 Unmodified _KYLLHSLVF_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 38.175570920033316 0.07371992880350783 1 [Y{I|L}]K{I|L}HS{I|L}V{M(Oxidation (M))|F} 9 2 + 77.177 0 0 6.8991 6.8991 91.355 0 0 0 19.621892823592972 65.94003155093382 19.621892823592972 12.781512503836439 0 1.3807196863200843 1.3979400086720375 0.3807196863200844 0 [Y{I|L}]K{I|L}HS{I|L}V{M(Oxidation (M))|F};[Y{I|L}]K{I|L}HSV{I|L}{M(Oxidation (M))|F} 6.8991;5.7566 -;- 207 NaN NaN 125964.5 NaN 9882 2883 12765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12768 58.051 NaN 89512 35 0 8113.6 0.261 + 28919 TWPLPPCF 8 44 480.7351782534113 959.4558035736226 2 480.73553466796875 MULTI HCD FTMS 0 0 0 12765 42511.0859375 1 0 0 3 Unmodified _TWPLPPCF_ REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7708 0 0 794.3769594347539 0 794.3769594347539 0 8.89075625191822 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7708 + + 4 + NaN NaN 94375.7 NaN 9883 2883 12765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12769 58.055 NaN 135390 35 0 9765.8 0.261 + 32496 WFEWKIAFE 9 37 628.3103007985529 NaN 0 628.7799072265625 PEAK HCD FTMS 0 0 0 12765 18585.6796875 0.8939929155997351 -1 0.029510498046875 4 Unmodified _WFEWKIAFE_ REV__ENST00000376723.7_1_2:128849017-128855062:+|nuORF 1.844237919475145 0.28630992268396543 1 WQ 2 -1 8.5835 0 0 0.68416 0 0 462.2524490882665 475.19416223697505 937.4466113252415 0 0 0 0 0 0 0 0 0 WQ 0.68416 - 8 + NaN NaN 117960.6 NaN 9884 2883 12765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12770 58.058 NaN 101450 35 0 9213.2 0.263 + 27724 TASPLEHIL 9 54 490.77435671551467 979.5341604978294 2 490.774169921875 MULTI HCD FTMS 0 0 0 12765 29654.267578125 0.12005006289449804 -6 0.1739654541015625 5 Unmodified _TASPLEHIL_ ENSG00000101191|ENST00000395343|DIDO1 20.453626601364224 0.18364154288633264 1 [TA]SY 4 6 35.01 0 0 3.5742 0 0 0 554.3176363580686 554.3176363580686 35.01016889216956 0 0 0 0 0.8494850021680094 1.2218487496163564 0.5 0 [TA]SY 3.5742 - 19 + NaN NaN 92888.1 NaN 9885 2883 12765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12771 58.061 NaN 78972 35 0 4025.7 0.261 -1 RCLYRDVML 9 54 613.3152465820312 NaN 0 613.3152465820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _RC(Carbamidomethyl (C))LYRDVML_ ENSG00000083828|ENST00000396154|ZNF586;ENSG00000105497|ENST00000262259|ZNF175;ENSG00000173480|ENST00000312026|ZNF417;ENSG00000179909|ENST00000684351|ZNF154;ENSG00000198466|ENST00000339656|ZNF587;nc|ENSG00000198466|Q96SQ5-2|ZNF587;ZNF417|p.F234Sfs*246|1|0.18|ENSG00000173480|chr19:57909577-57909577|A/-|frameshift_variant 3.944395688203298 0.27613285122220627 1 C(Carbamidomethyl (C)) 1 -1 2.7642 0 0 0.22572 0 0 476.22694433418116 585.3171577924265 1061.5441021266076 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.22572 + + 1 + NaN NaN 115832.7 NaN 9886 2883 12765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12773 58.066 NaN 793420 35 0 190420 0.327 + 16143 LPTSNNRH 8 71 469.7439900962782 937.4734272593564 2 469.74383544921875 MULTI HCD FTMS 0 0 0 12772 546980.75 0.9658597613209435 1 -0.032867431640625 1 Unmodified _LPTSNNRH_ ENSG00000244607|ENST00000310232|CCDC13 26.88365393820708 0.39599352634412927 1 {I|L}PTD 4 5 71.67 0 0 7.645 0 0 0 508.2388720776809 508.2388720776809 56.18562527100117 0 0 0 0 1.4247425010840047 1.6989700043360187 0.8494850021680094 0 {I|L}PTD 7.645 - 212 + NaN NaN 202137.1 NaN 9887 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12774 58.071 NaN 1011600 35 0 304520 0.261 + 22115 QIIEEDAAL 9 68 501.2612343736575 1000.507915814115 2 501.2611083984375 MULTI HCD FTMS 0 0 0 12772 675146.1875 0.4161905527324083 -3 0.0785675048828125 2 Unmodified _QIIEEDAAL_ ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF 82.5293158979368 0.005033931517079822 1 EEDAA{I|L} 6 3 75.126 0 0 7.5088 0 0 354.2271510942343 0 354.2271510942343 0 66.08471912431625 0 0 0 2.3494850021680094 0 1.1989700043360187 0 + EEDAA{I|L} 7.5088 + + 218 NaN NaN 243401.6 NaN 9888 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12775 58.074 NaN 714940 35 0 45958 0.261 + 33120 YDWSDRNL 8 97 534.7409293279104 1067.4673057226207 2 534.7412109375 MULTI HCD FTMS 0 0 0 12772 287118.4375 0.9492625741163406 -1 0.022853851318359375 3 Unmodified _YDWSDRNL_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 16.942295170755138 0.46913822049235215 1 [DV]H[PG]DSDD 9 7 52.601 0 0 4.9277 0 0 0 127.08477848705026 127.08477848705026 30.663246377227367 0 0 0 0 1.7059771852360797 1.5228787452803376 1.0356668758921828 0 [DV]H[PG]DSDD 4.9277 - 1324 NaN NaN 191516.1 NaN 9889 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12776 58.078 NaN 245630 35 0 23041 0.261 + 27919 TELERAFGYY 10 55 624.798563219164 1247.5825735051278 2 624.7985229492188 MULTI HCD FTMS 0 0 0 12772 184550.953125 1 0 0 4 Unmodified _TELERAFGYY_ ENSG00000112081|ENST00000373715|SRSF3;nc|ENSG00000112081|P84103-2|SRSF3 57.24910588100465 0.05142613675551719 1 {[ET]|[MV]}NG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}QYY 10 5 + 70.406 0 0 5.6434 5.6434 62.701 0 0 0 2.2134030500787816 2.2134030500787816 2.2134030500787816 0 0 1.8494850021680094 0 0.3494850021680094 0 {[ET]|[MV]}NG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}QYY;{[ET]|[MV]}NG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}KYY;{[ET]|[MV]}{I|L}E{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GYY;{[ET]|[MV]}NG{M(Oxidation (M))|F}{[VA]|[{I|L}G]}GKYY;{[ET]|[MV]}NG{M(Oxidation (M))|F}{[VA]|[{I|L}G]}KGYY;{[ET]|[MV]}NQ{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GYY;{[ET]|[MV]}NK{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GYY;{[ET]|[MV]}NG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}[SG]{M(Oxidation (M))|F}Y;{[ET]|[MV]}GGG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}QYY;{[ET]|[MV]}GGG{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}KYY 5.6434;5.6434;5.466;5.4056;5.0048;5.0013;5.0013;4.9272;4.9088;4.9088 -;-;+;-;-;-;-;-;-;- + 544 NaN NaN 121718.5 NaN 9890 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12777 58.081 NaN 372260 35 0 33065 0.262 + 18139 MPDFDVARI 9 76 540.2630707669418 1078.5115886006836 2 540.26318359375 MULTI HCD FTMS 0 0 0 12772 128066.53125 0.8818965127664382 1 -0.032867431640625 5 Oxidation (M) _M(Oxidation (M))PDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 43.981846655682396 0.04706587046877104 1 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L} 9 0 + 69.007 0 0 6.3983 6.3983 93.931 0 0 0 50.42342188037523 9.889917747712644 9.889917747712644 69.00691573685748 0 1.916386562212267 0 0 0 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L} 6.3983 + + 115 + NaN NaN 146023.2 NaN 9891 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12778 58.084 NaN 226260 35 0 17098 0.261 -1 VWMRSPLSTF 10 64 620.3133704234822 1238.6121879137643 2 620.3132934570312 MULTI HCD FTMS 0 0 0 12772 72760.890625 0.7377445948018337 1 -0.032867431640625 6 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ ENST00000558985.5_1_15:60656692-60690187:-|nuORF;ENST00000559725.5_1_15:60656692-60682421:-|nuORF 39.212999716063884 0.15223626971197562 1 {[RE]|[WV]}{M(Oxidation (M))|F}RS[{I|L}P]ST{M(Oxidation (M))|F} 10 -1 + 38.026 0 0 3.07 3.07 88.319 0 0 0 28.077053078093215 2.1741655787624836 2.1741655787624836 38.02555329489415 0 2.341129063296272 0 0 0 {[RE]|[WV]}{M(Oxidation (M))|F}RS[{I|L}P]ST{M(Oxidation (M))|F} 3.07 + + 107 + NaN NaN 117972.9 NaN 9892 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12779 58.088 NaN 116220 35 0 6821.3 0.261 + 19858 NYAWVYYHM 9 49 631.768870733439 NaN 0 631.76806640625 PEAK HCD FTMS 0 0 0 12772 28970.041015625 0.5980106308263322 1 -0.032867431640625 7 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 49.66892048692302 0.047266690391755836 1 AWD 3 7 24.693 0 0 1.9574 0 0 277.1048538783718 609.2368868463499 886.3417407247216 0 0 0 0 0 1 0 0 0 AWD 1.9574 - 56 + NaN NaN 100750.3 NaN 9893 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12780 58.091 NaN 154130 35 0 14842 0.263 + 27725 TASPLEHIL 9 59 490.77435671551467 979.5341604978294 2 490.7743225097656 MULTI HCD FTMS 0 0 0 12772 31395.8671875 0.12710062120256202 -5 0.14437484741210938 8 Unmodified _TASPLEHIL_ ENSG00000101191|ENST00000395343|DIDO1 26.88365393820708 0.12808753336095696 1 [TA]S 3 6 39.181 0 0 4 0 0 0 717.3973475294705 717.3973475294705 31.949237304209888 0 0 0 0 0.9247425010840047 1.5228787452803376 0.4247425010840047 0 + [TA]S 4 + + 35 + NaN NaN 113439.4 NaN 9894 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12781 58.094 NaN 311660 35 0 33422 0.261 + 32606 WLEAQVHQLLQ 11 73 455.5831407301623 1363.727592790687 3 456.2504577636719 MULTI HCD FTMS 0 0 0 12772 36795.3125 1 0 0 9 Unmodified _WLEAQVHQLLQ_ ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5;nc|ENSG00000082512|O00463-3|TRAF5 2.6312355333042263 0.4073809613003177 1 AEW 3 10 16.198 0 0 1.1878 0 0 292.2060037365762 682.3419887131676 974.5479924497438 0 0 0 0 0 0 0 0 0 AEW 1.1878 - 113 + NaN NaN 132261.5 NaN 9895 2884 12772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12783 58.099 NaN 3208000 35 0 626340 0.327 + 12641 KWFFQKLRF 9 119 433.9166464909982 1298.7281100731946 3 433.9169006347656 MULTI HCD FTMS 0 0 0 12782 1692122.375 0.4909165252035274 6 -0.14764785766601562 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 142.0795815696625 1.719916958814042E-05 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 101.57 0 0 7.8211 7.8211 88.248 0 0 0 16.020599913279625 4.259687322722812 4.259687322722812 4.259687322722812 0 1.6549471895720984 0 0 2.2451752218011642 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}{I|L}R 7.8211;7.4931;7.1846;7.173;7.112;6.8566;6.7841;6.5365;6.4756;6.4639 +;-;-;-;-;-;-;-;-;- + 3542 + NaN NaN 560452.6 NaN 9896 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12784 58.104 NaN 1616300 35 0 414240 0.261 + 23073 REFVMAAG 8 93 440.7212371853748 879.4279214375496 2 440.7212219238281 MULTI HCD FTMS 0 0 0 12782 910324.5 0.4647041955104902 -3 0.08523178100585938 2 Unmodified _REFVMAAG_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 12.531546534597751 0.5015908124873912 1 WVYYH{I|L} 6 7 + 55.142 0 0 6.2702 6.2702 85.981 0 0 0 35.94720941673181 6.650985219445985 6.650985219445985 5.374689380265949 0 1.4049471895720984 2 0 0 WVYYH{I|L};WVW[YN]{I|L};{[RE]|[WV]}YYH{I|L};WVY{I|L}{[WN]|[YH]};WVW[VS]{[CT]|[{M(Oxidation (M))|F}G]};{[RE]|[WV]}Y{[RE]|[WV]}Q 6.2702;5.659;5.4428;4.8803;4.2436;4.0214 -;-;-;-;-;- 377 + NaN NaN 327607.6 NaN 9897 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12785 58.107 NaN 472360 35 0 78171 0.261 -1 SADMRPYN 8 60 485.2087388152473 968.4029246972946 2 485.20855712890625 MULTI HCD FTMS 0 0 0 12782 247833.84375 0.7864195162002847 2 -0.055706024169921875 3 Oxidation (M) _SADM(Oxidation (M))RPYN_ ENSG00000159069|ENST00000325285|FBXW5;nc|ENSG00000159069|Q969U6-2|FBXW5 6.723162845929126 0.5320176132289695 1 SAS 3 -1 24.425 0 0 2.5222 0 0 0 720.2569063775999 720.2569063775999 18.48258770979733 0 0 0 0 0 0 0.4247425010840047 0 SAS 2.5222 - 34 + NaN NaN 151629.8 NaN 9898 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12786 58.111 NaN 444450 35 0 30239 0.261 + 12820 KYELDFSHF 9 83 593.2823792333921 1184.5502055335842 2 593.2826538085938 MULTI HCD FTMS 0 0 0 12782 161487.328125 0.13802683753564726 7 -0.1551971435546875 4 Unmodified _KYELDFSHF_ ENSG00000137462|ENST00000642700|TLR2 90.13494162714682 0.004522430935000059 1 KYE{I|L}D 5 4 44.249 0 0 3.7355 0 0 0 533.215118234 533.215118234 12.310494115932933 0 0 0 0 1.3829131673969606 0 0.3252574989159953 0 + KYE{I|L}D 3.7355 + + 679 + NaN NaN 143919.1 NaN 9899 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12787 58.114 NaN 257150 35 0 36397 0.263 + 18831 NADSSVQLL 9 57 473.74562812171456 945.4767033102291 2 473.7452697753906 MULTI HCD FTMS 0 0 0 12782 133284.875 0.6911312928203134 -2 0.055721282958984375 5 Unmodified _NADSSVQLL_ ENSG00000099624|ENST00000215375|ATP5F1D;ENST00000590265.5_1_19:1242319-1244433:+|nuORF 72.96794272382148 0.008127836904478181 1 Q{I|L}{I|L} 3 6 44.253 0 0 4.6804 0 0 573.2394733713012 0 573.2394733713012 0 28.767959391884546 0 0 0 1 0 0 0.805462187404089 + Q{I|L}{I|L} 4.6804 + + 51 NaN NaN 122711.7 NaN 9900 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12788 58.117 NaN 411160 35 0 42341 0.261 + 17048 LYKFSADEF 9 84 560.2715927236732 1118.5286325141462 2 560.2713623046875 MULTI HCD FTMS 0 0 0 12782 103638.421875 0.4676097737807678 -3 0.08523178100585938 6 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 83.42873516780209 0.004742894019233849 1 {I|L}YK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F} 9 0 + 99.434 0 0 8.8897 8.8897 95.678 0 0 0 62.43887181533495 16.478174818886373 16.478174818886373 18.578657607039247 0 2.774227503252014 2 0.9802046884880937 0.3807196863200844 + + {I|L}YK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]K{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]D{M(Oxidation (M))|F}T[KG]E{M(Oxidation (M))|F};[Y{I|L}]D{M(Oxidation (M))|F}T{[DA]|[EG]}K{M(Oxidation (M))|F};[YK]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]K{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[RH]WT{M(Oxidation (M))|F}PE{M(Oxidation (M))|F};[Y{I|L}]D{[CP]|[EA]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{M(Oxidation (M))|F};[RH]C(Carbamidomethyl (C))KKDE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[HQ]{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 8.8897;7.2287;5.4725;5.057;4.4554;4.3388;4.0143;3.538;2.5484;1.9746 +;+;-;-;-;-;-;-;-;- + 616 + NaN NaN 145369.9 NaN 9901 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12789 58.121 NaN 199580 35 0 22393 0.261 + 19144 NGKQLVLVF 9 61 509.3083050459064 1016.6020571586129 2 509.308349609375 MULTI HCD FTMS 0 0 0 12782 74439.1640625 1 0 0 7 Unmodified _NGKQLVLVF_ REV__ENST00000333681.4_1_18:60986166-60986492:-|nuORF;REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF 23.1484247019978 0.1603590852062899 1 Y{I|L}V{M(Oxidation (M))|F} 4 -1 38.047 0 0 3.7426 0 0 476.30134780097814 0 476.30134780097814 0 31.593793813122062 0 0 0 1 0 0 0 Y{I|L}V{M(Oxidation (M))|F} 3.7426 - 72 NaN NaN 106414.8 NaN 9902 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12790 58.124 NaN 210920 35 0 20107 0.261 -1 FVVEHDFIM 9 68 576.7735754858928 1151.5325980385855 2 576.7728881835938 MULTI HCD FTMS 0 0 0 12782 25271.42578125 0.05939050793997714 10 -0.176177978515625 8 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 28.486842064014134 0.11819662193267319 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.5587 0 0 873.4042216892003 0 873.4042216892003 0 20.59508461319119 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5587 + + 50 NaN NaN 117424.2 NaN 9903 2885 12782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12792 58.129 NaN 1376100 35 0 532500 0.327 + 16098 LPTDSATVL 9 67 458.7529852944324 915.4914176556648 2 458.7530212402344 MULTI HCD FTMS 0 0 0 12791 1446111.25 0.6534857745035206 2 -0.05237579345703125 1 Unmodified _LPTDSATVL_ ENSG00000196878|ENST00000356082|LAMB3 85.27202061508552 0.004649858145912257 1 {[TV]|[{I|L}S]}[EP]SATV{I|L} 9 3 + 86.722 0 0 9.4727 9.4727 98.957 0 0 0 7.644002796251996 67.75264802391148 7.644002796251996 86.72196741330231 0 2.2887254899964358 1.5228787452803376 1.274227503252014 0 {[TV]|[{I|L}S]}[EP]SATV{I|L} 9.4727 - 119 NaN NaN 290971 NaN 9904 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12793 58.133 NaN 1273300 35 0 245520 0.261 + 35931 YYTPITPHL 9 81 552.7900492265642 1103.5655455199283 2 552.7902221679688 MULTI HCD FTMS 0 0 0 12791 570931.0625 0.9307493294148023 2 -0.05237579345703125 2 Unmodified _YYTPITPHL_ ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|9|fusion 146.00731375242447 1.3047045798573153E-05 1 C(Carbamidomethyl (C))TP{I|L}TPH{I|L} 8 2 56.029 0 0 5.0771 0 0 166.09418429121575 0 166.09418429121575 0 34.39092375623636 0 0 0 1.8979400086720375 0 1.4476212463643423 0 C(Carbamidomethyl (C))TP{I|L}TPH{I|L} 5.0771 - 564 + NaN NaN 282674.1 NaN 9905 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12794 58.137 NaN 570820 35 0 113020 0.261 + 5705 FPAGYMYPSM 10 80 598.2433088441734 1194.4720647551467 2 598.2439575195312 MULTI HCD FTMS 0 0 0 12791 225341.3125 0.6137814187603285 10 -0.18603134155273438 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 100.37149154755038 0.000206371386929769 1 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 62.797 0 0 5.2573 0 0 63.99493783574673 0 63.99493783574673 0 50.98767215588211 0 0 0 1.4247425010840047 0 1.8539171939081172 0 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.2573 - 631 + NaN NaN 170189.5 NaN 9906 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12795 58.14 NaN 478000 35 0 50385 0.261 + 22192 QLLEYEASA 9 71 512.252718765325 1022.49088459745 2 512.2527465820312 MULTI HCD FTMS 0 0 0 12791 227623.328125 0.8926635848059307 -2 0.062404632568359375 4 Unmodified _QLLEYEASA_ ENSG00000254986|ENST00000531863|DPP3;nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3 42.09456458481378 0.05572955244001856 1 {I|L}EED{I|L} 5 6 38.848 0 0 3.7993 0 0 241.1435341287327 179.04377161197502 420.18730574070776 0 0 0 0 0 0.9194451763165201 0 0.6694451763165201 0 {I|L}EED{I|L} 3.7993 - 381 + NaN NaN 151223.7 NaN 9907 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12796 58.143 NaN 476230 35 0 84806 0.261 + 29451 TYTSYLDKF 9 90 569.2767270258796 1136.5389011185591 2 569.2660522460938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TYTSYLDKF_ ENSG00000069956|ENST00000261845|MAPK6 12.240655878213236 0.2545997876781172 1 VE{I|L} 3 8 26.198 0 0 2.3051 0 0 777.3121244120268 0 777.3121244120268 0 6.655170194428891 0 0 0 0 0 0 0 VE{I|L} 2.3051 - 679 NaN NaN 158922.8 NaN 9908 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12797 58.147 NaN 330030 35 0 28289 0.261 + 5409 FHATTSEVSW 10 76 582.7692560816736 1163.523959230147 2 582.7695922851562 MULTI HCD FTMS 0 0 0 12791 129077.7265625 0.013732006112754649 72 -1.8453140258789062 6 Unmodified _FHATTSEVSW_ ENSG00000155380|ENST00000369626|SLC16A1;nc|ENSG00000155380|P53985-2|SLC16A1 19.256988751693697 0.33098864134661865 1 ESMSW 5 7 39.597 0 0 3.4032 0 0 525.2603016584 0 525.2603016584 0 14.66312853471372 0 0 0 0.8807196863200843 0 0.2742275032520141 0 ESMSW 3.4032 - 198 NaN NaN 130171.3 NaN 9909 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12798 58.15 NaN 373220 35 0 42252 0.261 + 19456 NPSVREFVL 9 96 530.7929472343349 1059.5713415354696 2 530.7930297851562 MULTI HCD FTMS 0 0 0 12791 124322.8828125 0.004751225778367794 58 -1.4861068725585938 7 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 61.08992128646608 0.016056751534446034 1 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 55.072 0 0 5.1976 5.1976 89.772 0 0 0 9.137342758552691 31.734637923628615 9.137342758552691 21.276362525516532 0 1.6237125054200234 0 0.3494850021680094 1.1237125054200234 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVKKG[PS]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]TGKK{[YC]|[HE]}{I|L};[{M(Oxidation (M))|F}T]TGKK[H{I|L}]E 5.1976;3.1895;1.5657;0.36721 +;-;-;- + 241 NaN NaN 147102.4 NaN 9910 2886 12791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12800 58.155 NaN 1835500 35 0 565310 0.326 + 22116 QIIEEDAAL 9 69 501.2612343736575 1000.507915814115 2 501.26123046875 MULTI HCD FTMS 0 0 0 12799 1622204.5 1 0 0 1 Unmodified _QIIEEDAAL_ ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF 118.0683919894846 0.0016252157255221692 1 [Q{I|L}]{I|L}EEDAA{I|L} 9 0 + 91.666 0 0 9.1619 9.1619 95.893 0 0 0 10.756886463274284 75.5057560012586 10.756886463274284 17.698405410982616 0 2.6549471895720984 0 1.555462187404089 0.75 + + [Q{I|L}]{I|L}EEDAA{I|L};[Q{I|L}]{I|L}EEEGA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}EDAA{I|L};[Q{I|L}]{I|L}EEEQ{I|L};[Q{I|L}]{I|L}EEQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}EEGA{I|L};[Q{I|L}]{I|L}EE[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}EEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}EQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}E[AG]E{I|L} 9.1619;7.393;7.2121;5.8652;5.8072;5.4431;4.8815;3.9154;3.8574;2.9317 +;-;-;-;-;-;-;-;-;- + 440 NaN NaN 359751.7 NaN 9911 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12801 58.159 NaN 1896400 35 0 170660 0.261 + 2686 DVHGPDWNL 9 117 526.7433314658365 1051.472109998473 2 526.743408203125 MULTI HCD FTMS 0 0 0 12799 1245975.625 0.6968310902362184 2 -0.049083709716796875 2 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 110.6747026088012 0.0028322563155251486 1 [DV]HGPDWN{I|L} 9 0 + 73.27 0 0 6.9684 6.9684 91.364 0 0 0 15.929862658764257 16.478174818886366 15.929862658764257 12.442190502882148 0 1.8539171939081172 1.6989700043360187 1.1432502603108656 0.4247425010840047 + + [DV]HGPDWN{I|L};[DV]HGPWDN{I|L};[DV]HGPDWGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWN{I|L};[DV]HGPDW{I|L}N;[DV]HGPDWQV;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWGG{I|L};[DV]HGPD{I|L}WN;[DV]HGPWDGG{I|L};[DV]HGPDW[AG]V 6.9684;5.785;5.6887;5.4534;5.3854;5.3461;4.5725;4.5478;4.5054;4.4703 +;-;-;-;-;-;-;-;-;- + 3135 NaN NaN 372975 NaN 9912 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12802 58.163 NaN 1541000 35 0 193430 0.261 + 31481 VYEYVVERF 9 88 602.3061296600615 1202.597706386923 2 602.3060913085938 MULTI HCD FTMS 0 0 0 12799 666827.375 0.6904422252076652 -2 0.055706024169921875 3 Unmodified _VYEYVVERF_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 103.82355648334675 0.003950725192926219 1 [YV]EYVVER{M(Oxidation (M))|F} 9 0 + 114.85 0 0 9.55 9.55 90.16 0 0 0 3.4418767740052516 3.4418767740052516 3.4418767740052516 3.4418767740052516 0 2.9247425010840047 1.6989700043360187 1.3996498648046138 0 + + [YV]EYVVER{M(Oxidation (M))|F};VYEYVVER{M(Oxidation (M))|F};[YV]EVYVER{M(Oxidation (M))|F};[YV]EYVEVR{M(Oxidation (M))|F};[YE]VYVVER{M(Oxidation (M))|F};[YV]EVYEVR{M(Oxidation (M))|F};[YE]VVYVER{M(Oxidation (M))|F};[YV]VEYVER{M(Oxidation (M))|F};[YV]EYVERV{M(Oxidation (M))|F};[YV]EVYERV{M(Oxidation (M))|F} 9.55;9.2638;9.1532;8.3796;8.3407;7.9828;7.944;7.7372;7.7135;7.3168 +;+;-;-;-;-;-;-;-;- + 4489 NaN NaN 314202.9 NaN 9913 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12803 58.166 NaN 978060 35 0 153390 0.261 -1 DPRNATSVCI 10 94 566.7738872279571 1131.533221522714 2 566.7750244140625 MULTI HCD FTMS 0 0 0 12799 394165.6875 0.009188954677305334 73 -1.874908447265625 4 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 23.789781309258295 0.28859042913526417 1 MSVYTSVSW 9 -1 71.24 0 0 6.2959 0 0 73.0578534212312 0 73.0578534212312 0 46.62855401539366 0 0 0 0.5 0 1.579689690656103 0 MSVYTSVSW 6.2959 - 4865 + NaN NaN 235090.2 NaN 9914 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12804 58.17 NaN 867140 35 0 55320 0.261 + 22739 QYESKVFYL 9 109 588.8005989090054 1175.5866448848108 2 588.80126953125 MULTI HCD FTMS 0 0 0 12799 268437.65625 0.10916335474475768 11 -0.219970703125 5 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 56.17704186161178 0.022929533404884107 1 {[QN]|[E{I|L}]|[KN]}QAVKSEC(Carbamidomethyl (C)){I|L} 10 7 + 35.046 0 0 2.9812 2.9812 81.343 0 0 0 3.0090746888058177 8.560085581237711 3.0090746888058177 4.948500216800944 0 0.25 0 0.2614393726401688 0.6109243748081782 {[QN]|[E{I|L}]|[KN]}QAVKSEC(Carbamidomethyl (C)){I|L};{[QN]|[E{I|L}]|[KN]}QA[KS]VEC(Carbamidomethyl (C)){I|L};{[QN]|[E{I|L}]|[KN]}QAVKSE[CG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG]AVKSEC(Carbamidomethyl (C)){I|L};[YQ]ESKVY{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}QAV[{M(Oxidation (M))|F}T]QQ{I|L};{[QN]|[E{I|L}]|[KN]}QA[KS]VE[CG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG]A[KS]VEC(Carbamidomethyl (C)){I|L};[VP]{[CA]|SS}AVKSEC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{[NV]|[RG]}[R{I|L}]C(Carbamidomethyl (C)){I|L} 2.9812;2.5602;2.2016;2.2016;1.9346;1.8017;1.7806;1.7806;1.7231;1.5319 -;-;-;-;-;-;-;-;-;- 5162 NaN NaN 241184.8 NaN 9915 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12805 58.173 NaN 907730 35 0 275770 0.264 + 1703 CGSSKYHL 8 82 447.7107330147077 893.4069130962155 2 447.7110900878906 MULTI HCD FTMS 0 0 0 12799 218591.515625 0.7200892013825442 -2 0.055706024169921875 6 Unmodified _CGSSKYHL_ ENST00000471538.1_1_1:16200459-16203174:+|nuORF 21.74664581756881 0.4337896562907935 1 WV 2 8 38.443 0 0 4.303 0 0 0 605.2400560884184 605.2400560884184 5.985906397344536 0 0 0 0 0.3494850021680094 2 0 0 WV 4.303 - 91 + NaN NaN 220698.2 NaN 9916 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12806 58.176 NaN 471830 35 0 104170 0.261 -1 HFDMAVYL 8 57 506.23375482749594 1010.4529567217919 2 506.2336730957031 MULTI HCD FTMS 0 0 0 12799 238201.390625 0.42672801331233146 24 -0.5938529968261719 7 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 8.593279151180031 0.5292430274356741 1 VY{I|L} 3 -1 31.198 0 0 3.0875 0 0 617.2270985334 0 617.2270985334 0 23.239087409443187 0 0 0 0.5 0 0 0 VY{I|L} 3.0875 + + 41 NaN NaN 149860.5 NaN 9917 2887 12799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12808 58.181 NaN 639500 35 0 124010 0.327 + 31396 VYAILTHGI 9 58 493.78721393950485 985.5598749458097 2 493.78729248046875 MULTI HCD FTMS 0 0 0 12807 253744.984375 0.4540181004714948 3 -0.06573486328125 1 Unmodified _VYAILTHGI_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 131.29775728308752 0.0005262696486345744 1 VYA{I|L}{I|L}THG{I|L} 9 0 + 106.12 0 0 10.768 10.768 96.561 0 0 0 80.71842196392844 7.504311474114331 7.504311474114331 15.669015600442577 0 2.9489700043360187 1.6989700043360187 0.9802046884880937 0 + + VYA{I|L}{I|L}THG{I|L};[YV]A{I|L}{I|L}THG{I|L};[YV]VVVTHG{I|L} 10.768;9.1781;6.2609 +;+;- + 183 + NaN NaN 167204 NaN 9918 2888 12807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12809 58.186 NaN 474370 35 0 61060 0.261 + 29701 VDCPETGHNL 10 82 542.7386569826406 1083.462761032081 2 542.7385864257812 MULTI HCD FTMS 0 0 0 12807 244192 0.5553681698312143 3 -0.06573486328125 2 Unmodified _VDCPETGHNL_ FAM135B|p.A418E|1|0.43|ENSG00000147724|chr8:138167900-138167900|G/T|missense_variant 22.736283301280096 0.29844449404982915 1 D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 5 7 35.59 0 0 3.2849 0 0 505.22761733222814 0 505.22761733222814 0 15.82362386935278 0 0 0 0.7887254899964358 0 0.4247425010840047 0.4247425010840047 D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 3.2849 - 264 NaN NaN 153729.4 NaN 9919 2888 12807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12810 58.189 NaN 469510 35 0 115540 0.261 + 1605 AYVPGFAHI 9 59 487.75856371403296 973.5025744948659 2 487.75848388671875 MULTI HCD FTMS 0 0 0 12807 129885.359375 0.32988354991789287 3 -0.06573486328125 3 Unmodified _AYVPGFAHI_ ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF 28.173230860318316 0.11963627304438548 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS 4 6 37.664 0 0 3.8689 0 0 0 550.2756070304494 550.2756070304494 22.516702195269822 0 0 0 0 1 1.5228787452803376 0.2742275032520141 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS 3.8689 - 112 NaN NaN 145057.5 NaN 9920 2888 12807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12811 58.192 NaN 430510 35 0 24717 0.261 + 22797 QYLENLEKL 9 84 575.3107850977511 1148.6070172623022 2 575.310791015625 MULTI HCD FTMS 0 0 0 12807 123215.03125 0.7883907704907805 -1 0.02620697021484375 4 Unmodified _QYLENLEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000540706.5_1_16:21899129-21899858:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 67.83816525789305 0.009787749748478139 1 QY{I|L}EN{I|L}EK{I|L} 9 0 + 65.504 0 0 5.7029 5.7029 87.469 0 0 0 8.794464787163264 11.272022669357092 8.794464787163264 9.208187539523749 0 0.9163865622122673 0.958607314841775 0.3807196863200844 0.21346799108044048 + + QY{I|L}EN{I|L}EK{I|L};QY{I|L}EGG{I|L}EK{I|L};{[DS]|[MA]|[CV]|TT}A{I|L}NE{I|L}{M(Oxidation (M))|F}K{I|L};{[DS]|[MA]|[CV]|TT}A{I|L}EN{I|L}{M(Oxidation (M))|F}K{I|L};{[QN]|[E{I|L}]|[KN]}KWW{M(Oxidation (M))|F}K{I|L};{[DS]|[MA]|[CV]|TT}A{I|L}{[VA]|[{I|L}G]}W{M(Oxidation (M))|F}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{[VA]|[{I|L}G]}W{M(Oxidation (M))|F}K{I|L};{[DS]|[MA]|[CV]|TT}A{I|L}GGE{I|L}{M(Oxidation (M))|F}K{I|L};{[DS]|[MA]|[CV]|TT}A{I|L}R{[CP]|[EA]}{M(Oxidation (M))|F}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}R{[CP]|[EA]}{M(Oxidation (M))|F}K{I|L} 5.7029;4.9012;4.3465;4.0399;3.7119;3.6546;3.6286;3.1788;3.1178;3.0917 +;-;-;-;-;-;-;-;-;- + 2064 + NaN NaN 163182.2 NaN 9921 2888 12807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12812 58.196 NaN 184670 35 0 17841 0.262 + 16463 LSSMDPVAL 9 59 466.74126767133765 931.4679824094753 2 466.74127197265625 MULTI HCD FTMS 0 0 0 12807 52164.0859375 0.4056078587170721 4 -0.07328414916992188 5 Unmodified _LSSMDPVAL_ REV__ENSG00000182481|ENST00000330459|KPNA2;REV__ENST00000419546.1_1_7:88194857-88195094:-|nuORF;REV__ENST00000458289.2_1_4:81001192-81001915:+|nuORF;REV__ENST00000583392.1_1_17:66039031-66039124:+|nuORF;REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant 10.823927491677226 0.26684000660059787 1 VA{I|L} 3 -1 31.198 0 0 3.3493 0 0 630.2676556589206 0 630.2676556589206 0 15.713337517843655 0 0 0 0.5 0 0 0 VA{I|L} 3.3493 + + 44 NaN NaN 104477.7 NaN 9922 2888 12807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12813 58.199 NaN 191170 35 0 71907 0.261 + -1 CLLSQILDLF 10 44 407.88994171490526 1220.6479957449158 3 407.8901062011719 MULTI HCD FTMS 0 0 0 12807 63144.140625 0.33146288548254527 20 -0.489013671875 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLSQILDLF_ REV__ENSG00000122966|ENST00000392521|CIT;REV__nc|ENSG00000122966|O14578-2|CIT;REV__nc|ENSG00000122966|O14578|CIT 3.3196427980023873 0.4577323075863651 1 S 1 -1 10.485 0 0 0.85893 0 0 947.536599566564 183.05629907779533 1130.5928986443594 0 0 0 0 0 0.5 0 0 0 S 0.85893 + + 6 + NaN NaN 103571.2 NaN 9923 2888 12807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12815 58.204 NaN 1062800 35 0 160860 0.327 + 19999 NYIEKVVAI 9 81 524.8056471591605 1047.5967413851208 2 524.8056640625 MULTI HCD FTMS 0 0 0 12814 594919.75 0.5201019755940918 4 -0.057498931884765625 1 Unmodified _NYIEKVVAI_ ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 99.75527289724121 0.004270341300239591 1 [YN]{I|L}T[VG]VVA{I|L} 10 3 + 82.226 0 0 7.849 7.849 86.54 0 0 0 0.5219674738251285 0.5219674738251285 0.5219674738251285 0.5219674738251285 0 2.138210492164445 2 0 1.363364334130467 [YN]{I|L}T[VG]VVA{I|L};[YN]{I|L}EKVVA{I|L};[YN]{I|L}EKVG{I|L}{I|L};[YN]{I|L}T[VG]VAV{I|L};[YN]{I|L}T[VG]VG{I|L}{I|L};[YN]{I|L}T[VG]VA{I|L}V;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DT[VG]VVA{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DT[VG]VAV{I|L};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}[YN]VVA{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DT[VG]VG{I|L}{I|L} 7.849;7.7992;6.7657;6.5353;6.0798;5.4626;5.2349;3.9211;3.6734;3.4657 -;+;-;-;-;-;-;-;-;- + 916 NaN NaN 255503.9 NaN 9924 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12816 58.208 NaN 1363300 35 0 167710 0.261 + 15664 LPEKEVLVL 9 97 520.323611818584 1038.632670703968 2 520.3236083984375 MULTI HCD FTMS 0 0 0 12814 714524.625 1 0 0 2 Unmodified _LPEKEVLVL_ ENSG00000136940|ENST00000259467|PDCL;nc|ENSG00000136940|Q13371-2|PDCL 74.19965305603844 0.007729275404663812 1 [{I|L}P]EKEV{I|L}V{I|L} 9 0 + 78.471 0 0 7.5552 7.5552 88.769 0 0 0 14.252509456924827 10.836134377877329 10.836134377877329 6.465912507003608 0 1.579689690656103 1.2218487496163564 1.1861818737241736 0 + + [{I|L}P]EKEV{I|L}V{I|L};[{I|L}P][SG]{I|L}EV{I|L}V{I|L};[{I|L}P]EKD{I|L}{I|L}V{I|L};[{I|L}P]EKEVV{I|L}{I|L};[{I|L}P]EKEV{I|L}{I|L}V;[{I|L}P]E{[SA]|[TG]}VV{I|L}V{I|L};[{I|L}P][SG]{I|L}D{I|L}{I|L}V{I|L};[EP]K{I|L}EV{I|L}V{I|L};[{I|L}P][SG]{I|L}EVV{I|L}{I|L};[EP]{I|L}KEV{I|L}V{I|L} 7.5552;6.9327;6.8742;6.5433;6.5119;6.4346;6.2517;6.183;5.9207;5.9189 +;-;-;-;-;-;-;-;-;- + 746 NaN NaN 298977.9 NaN 9925 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12817 58.212 NaN 220680 35 0 49239 0.261 + 16144 LPTSNNRH 8 50 469.7439900962782 937.4734272593564 2 469.7440490722656 MULTI HCD FTMS 0 0 0 12814 153147.828125 0.2704287577206938 6 -0.07138824462890625 3 Unmodified _LPTSNNRH_ ENSG00000244607|ENST00000310232|CCDC13 21.74664581756881 0.4337896562907935 1 {I|L}PTD 4 5 67.423 0 0 7.192 0 0 0 508.24115930728755 508.24115930728755 51.938200260161125 0 0 0 0 1 1.6989700043360187 0.8494850021680094 0 {I|L}PTD 7.192 - 29 + NaN NaN 124366.4 NaN 9926 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12818 58.215 NaN 375030 35 0 35186 0.261 + 27726 TASPLEHIL 9 52 490.77435671551467 979.5341604978294 2 490.7744140625 MULTI HCD FTMS 0 0 0 12814 247015.84375 1 0 0 4 Unmodified _TASPLEHIL_ ENSG00000101191|ENST00000395343|DIDO1 48.345845343767074 0.03388484103555672 1 [TA]S 3 6 41.695 0 0 4.2566 0 0 0 717.3947921719106 717.3947921719106 38.595756168365014 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 + [TA]S 4.2566 + + 12 NaN NaN 143991.7 NaN 9927 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12819 58.219 NaN 14672 35 0 5255.9 0.261 -1 FCRHCLAL 8 7 538.7598266601562 NaN 0 538.7598266601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))RHC(Carbamidomethyl (C))LAL_ ENSG00000103429|ENST00000261658|BFAR 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76171 NaN 9928 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12820 58.222 NaN 17118 35 0 5726.6 0.261 + -1 VSSPRRPCR 9 11 557.7984619140625 NaN 0 557.7984619140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _VSSPRRPC(Carbamidomethyl (C))R_ REV__ENST00000528048.5_2_11:111957606-111965694:+|nuORF;REV__ENST00000528182.5_2_11:111957606-111959624:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85320.2 NaN 9929 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12821 58.225 NaN 12647 35 0 2221.4 0.261 -1 KYVKMYDNH 9 15 607.28515625 NaN 0 607.28515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _KYVKM(Oxidation (M))YDNH_ ENSG00000066933|ENST00000356056|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81609.2 NaN 9930 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12822 58.229 NaN 22072 35 0 5258.5 0.264 -1 0 23 424.0815734863281 NaN 0 424.0815734863281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82407.5 NaN 9931 2889 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12824 58.234 NaN 18309 35 0 3940.8 0.327 + 25645 SHATPPPL 8 17 410.220458984375 NaN 0 410.220458984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SHATPPPL_ REV__ENST00000499203.6_1_5:139487027-139487156:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78102.1 NaN 9932 2890 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12825 58.239 NaN 15302 35 0 4741.4 0.261 -1 MEDRRAEK 8 10 546.7576293945312 NaN 0 546.7576293945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))EDRRAEK_ ENSG00000198265|ENST00000358691|HELZ;ENST00000580662.5_1_17:65186450-65214920:-|nuORF;ENST00000580963.1_1_17:65211970-65214920:-|nuORF;ENST00000584641.5_1_17:65197178-65214920:-|nuORF;nc|ENSG00000198265|P42694-2|HELZ 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92002.5 NaN 9933 2890 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12826 58.242 NaN 25706 35 0 6968.4 0.261 + 30372 VLKLKTKM 8 17 480.8166198730469 NaN 0 480.8166198730469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VLKLKTKM_ ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9-4|CKAP2;nc|ENSG00000136108|Q8WWK9-6|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89546.6 NaN 9934 2890 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12832 58.275 NaN 175480 35 0 41400 0.327 + 22476 QREQAWAL 8 27 501.2612927269284 1000.5080325206568 2 501.26116943359375 MULTI HCD FTMS 0 0 0 12831 100628.1015625 0.15880010247715592 -3 0.0209808349609375 1 Unmodified _QREQAWAL_ REV__ENSG00000137877|ENST00000320955|SPTBN5 10.823927491677226 0.514154816617796 1 WA{I|L} 3 -1 31.198 0 0 3.1182 0 0 612.3097401349625 0 612.3097401349625 0 31.197887582883936 0 0 0 0.5 0 0 0 WA{I|L} 3.1182 + + 4 NaN NaN 106879.8 NaN 9935 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12833 58.28 NaN 237220 35 0 51223 0.261 -1 0 49 440.7212878422356 879.4280227512712 2 440.7215881347656 MULTI HCD FTMS 0 0 0 12831 71615.859375 0.06150130811622461 -3 0.0209808349609375 2 NaN NaN 1 WV 2 -1 45.217 0 0 5.1416 0 0 0 591.2573054075007 591.2573054075007 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 WV 5.1416 - 13 + NaN NaN 118372.3 NaN 9936 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12834 58.283 NaN 140820 35 0 38596 0.261 + 2015 DCYGAVVW 8 33 456.7003698742342 NaN 0 456.7162780761719 PEAK HCD FTMS 0 0 0 12831 19044.96875 0.9866696213053735 1 -0.03939056396484375 3 Unmodified _DCYGAVVW_ nc|ENSG00000250878|A6NDL7|METTL21EP 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118152.4 NaN 9937 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12835 58.287 NaN 94855 35 0 15243 0.261 + 4106 ESTLPGTVI 9 27 458.75299863310283 915.4914443330057 2 458.7531433105469 MULTI HCD FTMS 0 0 0 12831 17001.048828125 0.08552430316337868 -2 0.013889312744140625 4 Unmodified _ESTLPGTVI_ ENSG00000113205|ENST00000231130|PCDHB3;PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant 7.289230182591677 0.29575926068275815 1 TV{I|L} 3 6 30.445 0 0 3.3256 0 0 584.2796498029312 0 584.2796498029312 0 30.445312593723983 0 0 0 0 0 0.4247425010840047 0 + TV{I|L} 3.3256 + + 3 NaN NaN 108105.8 NaN 9938 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12836 58.29 NaN 193620 35 0 25180 0.261 + 35932 YYTPITPHL 9 55 552.7900245897755 1103.565496246351 2 552.7899780273438 MULTI HCD FTMS 0 0 0 12831 43323.6171875 0.3288280312548401 -3 0.0209808349609375 5 Unmodified _YYTPITPHL_ ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|9|fusion 48.345845343767074 0.03388484103555672 1 YYTP{I|L}TP[H{I|L}] 9 0 + 52.831 0 0 4.7873 4.7873 90.811 0 0 0 52.45285578833528 4.137342758552691 4.137342758552691 52.83145935802587 0 1.2302046884880937 2 0.5 0 + + YYTP{I|L}TP[H{I|L}] 4.7873 + + 58 + NaN NaN 109806.3 NaN 9939 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12837 58.293 NaN 130990 35 0 22942 0.261 -1 FPAGYMYPSM 10 41 598.2437474687239 1194.4729420042477 2 598.2437133789062 MULTI HCD FTMS 0 0 0 12831 50663.0625 0.2749636519285784 -3 0.0209808349609375 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 25.399314129420986 0.2735354021946395 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 48.628 0 0 4.0711 0 0 535.2429066388687 0 535.2429066388687 0 38.17024086827658 0 0 0 1.305462187404089 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.0711 + + 36 NaN NaN 111832.2 NaN 9940 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12838 58.297 NaN 213980 35 0 30880 0.261 + 17049 LYKFSADEF 9 48 560.2718420797719 1118.5291312263437 2 560.2890625 MULTI HCD FTMS 0 0 0 12831 25746.802734375 0.21552658715869683 -3 0.0209808349609375 7 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 26.268140514670165 0.13340543277302316 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{[TV]|[{I|L}S]}{I|L}DT 8 6 45.648 0 0 4.0811 0 0 0 241.0658569204991 241.0658569204991 5.899028321079953 0 0 0 0 0 2 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{[TV]|[{I|L}S]}{I|L}DT 4.0811 - 215 NaN NaN 124677.9 NaN 9941 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12839 58.3 NaN 208300 35 0 26542 0.261 + 19323 NNNCYQDAL 9 58 527.7169413244263 1053.4193297156526 2 527.7164306640625 MULTI HCD FTMS 0 0 0 12831 44109.3671875 0.6181161489277007 1 -0.03939056396484375 8 Unmodified _NNNCYQDAL_ ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4 3.5964929083625545 0.32375295897743744 1 VTE{M(Oxidation (M))|F} 4 9 27.423 0 0 2.6032 0 0 559.2131967584245 0 559.2131967584245 0 9.859856381998782 0 0 0 0 0 0 0 VTE{M(Oxidation (M))|F} 2.6032 - 18 + NaN NaN 118004.5 NaN 9942 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12840 58.303 NaN 168790 35 0 13154 0.261 + 498 AMSDFSFLRG 10 49 565.7670943376254 NaN 0 565.7669677734375 PEAK HCD FTMS 0 0 0 12831 25549.21875 0.13922620829599688 -7 0.09426498413085938 9 Unmodified _AMSDFSFLRG_ REV__ENSG00000050030|ENST00000055682|NEXMIF 13.042465956692817 0.3290217458104555 1 S 1 -1 21.237 0 0 1.8802 0 0 840.4133563004476 199.0513094537719 1039.4646657542196 0 0 0 0 0 1 0 0.4247425010840047 0 S 1.8802 + + 21 + NaN NaN 104244.1 NaN 9943 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12841 58.307 NaN 111250 35 0 12991 0.261 + 19474 NPTLNYILL 9 50 530.805701989481 1059.596851045762 2 530.792724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _NPTLNYILL_ REV__SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|14|3|sense;REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense 20.453626601364224 0.18364154288633264 1 D 1 -1 6.1536 0 0 0.58075 0 0 249.22125397720566 692.3241671197874 941.5454210969931 0 0 0 0 0 0 0 0.3054621874040891 0 D 0.58075 - 37 + NaN NaN 95753.9 NaN 9944 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12842 58.31 NaN 123460 35 0 11407 0.261 + -1 KSMAWSKKTHK 11 51 449.9118084203115 1346.7135958611345 3 449.9114685058594 MULTI HCD FTMS 0 0 0 12831 12817.0625 0.2727327209061411 1 -0.03939056396484375 11 Oxidation (M) _KSM(Oxidation (M))AWSKKTHK_ REV__ENSG00000198920|ENST00000361413|KIAA0753;REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant 1.214830529360525 0.41359283248740725 1 K 1 -1 1.1092 0 0 0.082367 0 0 784.3525251597658 431.2430450740451 1215.595570233811 0 0 0 0 0 0 0 0 0 K 0.082367 + + 5 + NaN NaN 91784.6 NaN 9945 2895 12831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12844 58.315 NaN 1073600 35 0 137380 0.327 + 31482 VYEYVVERF 9 79 602.3061952326351 1202.5978375320701 2 602.3060302734375 MULTI HCD FTMS 0 0 0 12843 510744.375 0.708750476148185 -2 0.046184539794921875 1 Unmodified _VYEYVVERF_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 84.5221896805406 0.004669506596793478 1 [YV]EYVVER{M(Oxidation (M))|F} 9 0 + 111.79 0 0 9.296 9.296 89.754 0 0 0 3.952176730645064 3.952176730645064 3.952176730645064 3.0102999566398125 0 2.9247425010840047 1.6989700043360187 1.0941876774005248 0 + + [YV]EYVVER{M(Oxidation (M))|F};[YV]EVYVER{M(Oxidation (M))|F};VYEYVVER{M(Oxidation (M))|F};[YV]EYVEVR{M(Oxidation (M))|F};[YV]EVYEVR{M(Oxidation (M))|F};[YE]VYVVER{M(Oxidation (M))|F};[YE]VVYVER{M(Oxidation (M))|F};[YV]EYVERV{M(Oxidation (M))|F};[YV]EVYERV{M(Oxidation (M))|F};[YE]VYVEVR{M(Oxidation (M))|F} 9.296;9.0457;8.9673;8.2332;7.9828;7.9403;7.69;7.5671;7.3168;6.8775 +;-;+;-;-;-;-;-;-;- + 3130 NaN NaN 250935.7 NaN 9946 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12845 58.319 NaN 152970 35 0 16215 0.261 + -1 TMQHQQVEQ 9 49 572.7561248082409 NaN 0 572.7559814453125 PEAK HCD FTMS 0 0 0 12843 87076.6953125 0.8375351924976174 2 -0.060108184814453125 2 Oxidation (M) _TM(Oxidation (M))QHQQVEQ_ REV__ENST00000371018.7_1_1:67390609-67411913:+|nuORF;REV__ENST00000401042.7_1_1:67396018-67411916:+|nuORF;REV__ENST00000479067.1_1_1:67405893-67411913:+|nuORF 4.3292370932331545 0.2742679634796037 1 A 1 -1 4.6041 0 0 0.40263 0 0 852.3759753471473 217.06264673404533 1069.4386220811928 0 0 0 0 0 0 0 0 0 A 0.40263 - 9 + NaN NaN 106277 NaN 9947 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12846 58.323 NaN 87207 35 0 5671.4 0.261 -1 GGFCNFMHL 9 42 549.7279703909128 NaN 0 549.7280883789062 PEAK HCD FTMS 0 0 0 12843 31805.01953125 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _GGFC(Carbamidomethyl (C))NFM(Oxidation (M))HL_ ENSG00000160201|ENST00000291552|U2AF1;ENSG00000161265|ENST00000378975|U2AF1L4;ENST00000478282.1_1_21:44514579-44514991:-|nuORF;ENST00000587987.5_1_19:36233501-36235544:-|nuORF;ENST00000591084.5_3_19:36233501-36234996:-|nuORF;nc|ENSG00000160201|Q01081-2|U2AF1;nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000161265|Q8WU68|U2AF1L4 4.75600775471527 0.27219989241163056 1 Q 1 -1 5.4846 0 0 0.49976 0 0 477.1863962488192 489.17792688541255 966.3643231342318 0 0 0 0 0 0 0 0 0 Q 0.49976 - 6 + NaN NaN 99630.1 NaN 9948 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12847 58.326 NaN 138740 35 0 16854 0.261 + 4001 ERNLAEQSSM 10 47 582.7697221623883 1163.5248913915766 2 582.7700805664062 MULTI HCD FTMS 0 0 0 12843 74452.703125 0.4799700754841581 -18 0.4189949035644531 4 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 12.240655878213236 0.39661705172222156 1 S{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 25.19 0 0 2.1649 0 0 840.4130272331766 0 840.4130272331766 0 0.7255998297264199 0 0 0 1 0 0.7742275032520141 0 S{[MS]|[{M(Oxidation (M))|F}A]} 2.1649 + + 23 + NaN NaN 101185.3 NaN 9949 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12848 58.329 NaN 470410 35 0 77118 0.261 + 17050 LYKFSADEF 9 81 560.2718420797719 1118.5291312263437 2 560.27099609375 MULTI HCD FTMS 0 0 0 12843 45980.25390625 0.38490088665935335 -2 0.046184539794921875 5 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 40.23920728925047 0.06424668180817725 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{[TV]|[{I|L}S]}{I|L}DT{I|L} 9 6 52.263 0 0 4.6725 0 0 0 127.97936250979991 127.97936250979991 5.070115906420618 0 0 0 0 0 2 0.7614393726401688 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{[TV]|[{I|L}S]}{I|L}DT{I|L} 4.6725 - 936 NaN NaN 166830.4 NaN 9950 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12849 58.333 NaN 406210 35 0 22817 0.261 + 33474 YHQILDASEC 10 90 589.759633700115 1177.50471446703 2 589.7597045898438 MULTI HCD FTMS 0 0 0 12843 45355.58203125 0.6880075680050911 -2 0.046184539794921875 6 Unmodified _YHQILDASEC_ REV__ENSG00000178229|ENST00000321545|ZNF543 8.155526934196011 0.43213520406898465 1 C(Carbamidomethyl (C))TQ 3 -1 21.605 0 0 1.8348 0 0 0 785.3619709116758 785.3619709116758 -1.3148568754962682 0 -1.3148568754962682 0 0 0 0 0 0.23965182871044374 C(Carbamidomethyl (C))TQ 1.8348 - 1084 + NaN NaN 148687.4 NaN 9951 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12850 58.336 NaN 90049 35 0 10798 0.262 + 25257 SATERCCSL 9 39 485.208839637365 968.40312634153 2 485.2084045410156 MULTI HCD FTMS 0 0 0 12843 37590.9921875 0.7133011894339772 2 -0.060108184814453125 7 Unmodified _SATERCCSL_ REV__ENSG00000140391|ENST00000267970|TSPAN3;REV__nc|ENSG00000140391|O60637-2|TSPAN3;REV__nc|ENSG00000140391|O60637-3|TSPAN3 2.9952420565917617 0.3283108881486655 1 SA 2 -1 17.959 0 0 1.8545 0 0 0 807.2980154065972 807.2980154065972 4.006375246153906 0 0 0 0 0 0 0 0 SA 1.8545 + + 6 + NaN NaN 101123.5 NaN 9952 2896 12843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12852 58.342 NaN 515640 35 0 76527 0.327 + 20000 NYIEKVVAI 9 69 524.8055838473064 1047.5966147614126 2 524.8055419921875 MULTI HCD FTMS 0 0 0 12851 181390.453125 0.7315155259260716 -1 0.027713775634765625 1 Unmodified _NYIEKVVAI_ ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 61.60191391372663 0.015340508911304802 1 [YN]{I|L}E 4 5 46.198 0 0 4.4099 0 0 0 525.3413179986936 525.3413179986936 0.14915392867328592 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 + [YN]{I|L}E 4.4099 + + 136 + NaN NaN 174283.5 NaN 9953 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12853 58.346 NaN 1206600 35 0 258370 0.262 + 12642 KWFFQKLRF 9 85 433.91669708106457 1298.7282618433937 3 433.9167785644531 MULTI HCD FTMS 0 0 0 12851 468504.5625 0.631753069884643 -1 0.027713775634765625 2 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 93.16586880292088 0.00444300900000894 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 95.245 0 0 7.3337 7.3337 86.886 0 0 0 13.590671722280234 14.49092531119419 13.590671722280234 3.0102999566398125 0 1.9802046884880937 0 0 1.110924374808178 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 7.3337;7.1019;6.6247;6.3929;6.2873;6.218;5.9862;5.5783;5.5089;5.2772 +;-;-;-;-;-;-;-;-;- + 1110 + NaN NaN 260205.4 NaN 9954 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12854 58.35 NaN 922260 35 0 344200 0.261 + 1704 CGSSKYHL 8 82 447.7108504461395 893.407147959079 2 447.7108459472656 MULTI HCD FTMS 0 0 0 12851 179845.765625 0.8546201912931884 -1 0.027713775634765625 3 Unmodified _CGSSKYHL_ ENST00000471538.1_1_1:16200459-16203174:+|nuORF 21.74664581756881 0.4337896562907935 1 ER 2 8 38.245 0 0 4.2808 0 0 0 605.2390813541939 605.2390813541939 5.705001070548178 0 0 0 0 0.6307196863200843 2 0 0 ER 4.2808 - 113 + NaN NaN 233464.8 NaN 9955 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12855 58.353 NaN 273440 35 0 50694 0.261 + 12378 KPEDVYYFL 9 47 587.2964051702253 1172.5782574072505 2 587.7985229492188 MULTI HCD FTMS 0 0 0 12851 129441.03125 0.9402786140689492 -1 0.027713775634765625 4 Unmodified _KPEDVYYFL_ tr|U7T607|U7T607_FUSNUDUF4261domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00327PE=4SV=1 7.910154910731844 0.2910521888787154 1 {I|L}YQYY{I|L}{M(Oxidation (M))|F} 7 7 51.714 0 0 4.4103 0 0 164.07487258899693 0 164.07487258899693 0 33.75524478413823 0 0 0 0 0 0 0.4247425010840047 {I|L}YQYY{I|L}{M(Oxidation (M))|F} 4.4103 - 121 + NaN NaN 127411.8 NaN 9956 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12856 58.357 NaN 228110 35 0 29388 0.261 -1 RYMEENNL 8 62 542.7391353761029 1083.4637178190058 2 542.7385864257812 MULTI HCD FTMS 0 0 0 12851 83050.4453125 0.6318262083082467 -1 0.027713775634765625 5 Oxidation (M) _RYM(Oxidation (M))EENNL_ ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;OSBPL6|p.R883T|1|0.2|ENSG00000079156|chr2:178394387-178394387|G/C|missense_variant 21.74664581756881 0.4337896562907935 1 D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 5 -1 27.804 0 0 2.5662 0 0 505.228807517775 0 505.228807517775 0 11.35029351276792 0 0 0 0.5 0 0.9247425010840047 0 D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 2.5662 - 107 NaN NaN 115599.2 NaN 9957 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12857 58.36 NaN 305100 35 0 56102 0.261 + 31397 VYAILTHGI 9 52 493.7872057016367 985.5598584700734 2 493.7872314453125 MULTI HCD FTMS 0 0 0 12851 95783.4140625 0.9767044521660242 -1 0.027713775634765625 6 Unmodified _VYAILTHGI_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 104.79918948944588 0.003791450360204016 1 VYA{I|L}{I|L}THG{I|L} 9 0 + 92.59 0 0 9.3947 9.3947 88.902 0 0 0 0.9813624419633271 0.9813624419633271 0.9813624419633271 0.9813624419633271 0 3.004432191740108 1.6989700043360187 0.3494850021680094 0 + + VYA{I|L}{I|L}THG{I|L};[YV]A{I|L}{I|L}THG{I|L} 9.3947;9.2951 +;+ + 133 + NaN NaN 129852.8 NaN 9958 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12858 58.363 NaN 327170 35 0 82995 0.261 -1 WCEAGIYL 8 44 506.2339397312328 1010.4533265292656 2 506.2334899902344 MULTI HCD FTMS 0 0 0 12851 86004.859375 0.577617960049229 -3 0.0738983154296875 7 Carbamidomethyl (C) _WC(Carbamidomethyl (C))EAGIYL_ ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182948954-183027611:-|nuORF;nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2 5.230669730166228 0.5342319408533849 1 Y{I|L} 2 -1 25.969 0 0 2.57 0 0 716.2953188262917 0 716.2953188262917 0 24.186363512511498 0 0 0 0.5 0 0 0 Y{I|L} 2.57 + + 15 NaN NaN 129856.3 NaN 9959 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12859 58.367 NaN 353460 35 0 31847 0.261 + 35842 YYQNYFEKL 9 78 634.3036450504073 1266.5927371676146 2 634.3037719726562 MULTI HCD FTMS 0 0 0 12851 102332.2109375 0.0500471818562956 -5 0.08808517456054688 8 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 110.79276546118962 0.0028129822227594098 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 107.18 0 0 8.4618 8.4618 92.194 0 0 0 2.0166752027937207 2.0166752027937207 2.0166752027937207 9.208187539523749 0 3.0356668758921828 2 0.6989700043360187 0.4247425010840047 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YY[YN]Q{M(Oxidation (M))|F}EK{I|L};YY[YN][AG]{M(Oxidation (M))|F}EK{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}GR[DG][WC(Carbamidomethyl (C))]{I|L} 8.4618;7.7348;7.7348;7.0113;6.1908;5.4638;1.4342 +;-;-;-;-;-;- + 256 + NaN NaN 138813.5 NaN 9960 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12860 58.37 NaN 148700 35 0 16506 0.264 + 18832 NADSSVQLL 9 48 473.74578706582867 945.4770211984574 2 473.74578857421875 MULTI HCD FTMS 0 0 0 12851 36767.15234375 0.4256953647535805 -1 0.027713775634765625 9 Unmodified _NADSSVQLL_ ENSG00000099624|ENST00000215375|ATP5F1D;ENST00000590265.5_1_19:1242319-1244433:+|nuORF 24.990960013464015 0.14443998892849796 1 Q{I|L}{I|L} 3 6 39.693 0 0 4.1982 0 0 573.2389908029164 0 573.2389908029164 0 24.20818753952375 0 0 0 1 0 0 0.3494850021680094 + Q{I|L}{I|L} 4.1982 + + 18 NaN NaN 105389.5 NaN 9961 2897 12851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12862 58.375 NaN 459620 35 0 38586 0.327 + 2687 DVHGPDWNL 9 75 526.7438885258473 1051.4732241184945 2 526.7435302734375 MULTI HCD FTMS 0 0 0 12861 255164.546875 1 0 0 1 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 57.72198328787511 0.020768266150574023 1 [DV]H[PG]DWN{I|L} 9 0 + 54.337 0 0 5.1677 5.1677 88.468 0 0 0 14.057963224192989 24.85608539858802 14.057963224192989 13.455612550363796 0 1.6989700043360187 1.3979400086720375 0.25 0.4247425010840047 + + [DV]H[PG]DWN{I|L};[DV]H[PG]DWGG{I|L};[DV]H[PG]DW{I|L}N;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWN{I|L};[DV]H[PG]D{I|L}WN;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}D{[DA]|[EG]}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DW{I|L}N;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}D[NG]E{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}D{[DA]|[EG]}{I|L}N 5.1677;3.888;3.6185;3.3368;2.6892;2.4559;2.4559;2.0253;1.4078;1.1444 +;-;-;-;-;-;-;-;-;- + 331 NaN NaN 169220.8 NaN 9962 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12863 58.379 NaN 497410 35 0 104320 0.261 + 15263 LPAAGVGDMVM 11 72 538.7596139060192 1075.5046748788384 2 538.759521484375 MULTI HCD FTMS 0 0 0 12861 211401.015625 1 0 0 2 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 88.95385435242217 0.007759427153300959 1 AGVGDMV{M(Oxidation (M))|F} 8 3 70.431 0 0 6.5486 0 0 281.1737538068375 0 281.1737538068375 0 52.472156688687264 0 0 0 3.3979400086720375 0 0.4247425010840047 0 + AGVGDMV{M(Oxidation (M))|F} 6.5486 + + 352 NaN NaN 156673.1 NaN 9963 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12864 58.383 NaN 394890 35 0 58933 0.261 + 27727 TASPLEHIL 9 49 490.77437307142725 979.5341932096545 2 490.7743835449219 MULTI HCD FTMS 0 0 0 12861 205145.5625 1 0 0 3 Unmodified _TASPLEHIL_ ENSG00000101191|ENST00000395343|DIDO1 88.90359156742426 0.00455469703666567 1 [TA]SP{I|L}EH{I|L}{I|L} 9 0 + 66.609 0 0 6.8001 6.8001 94.338 0 0 0 47.145096999615745 7.632192780232785 7.632192780232785 53.24662239119597 0 2.1549471895720984 1.6989700043360187 0.4247425010840047 0 + + [TA]SP{I|L}EH{I|L}{I|L};[TA][KT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[TA] 6.8001;1.3642 +;- + 82 + NaN NaN 140302.9 NaN 9964 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12865 58.386 NaN 365730 35 0 48685 0.261 + 14075 KYVYVVTEL 9 75 557.313490719384 1112.612428505568 2 557.7982788085938 MULTI HCD FTMS 0 0 0 12861 8341.095703125 0.6314619580574059 -1 0.0323944091796875 4 Unmodified _KYVYVVTEL_ ENSG00000177189|ENST00000379565|RPS6KA3 13.042465956692817 0.2476723265019929 1 [{I|L}P][WQ]KV 6 8 33.134 0 0 2.978 0 0 0 358.1622790510799 358.1622790510799 8.669687155616401 0 0 0 0 1 1.5228787452803376 0 0 [{I|L}P][WQ]KV 2.978 - 261 NaN NaN 141911.5 NaN 9965 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12866 58.39 NaN 237540 35 0 38545 0.261 + 1606 AYVPGFAHI 9 50 487.75818322528323 973.5018135173665 2 487.7579345703125 MULTI HCD FTMS 0 0 0 12861 62649.1015625 1 0 0 5 Unmodified _AYVPGFAHI_ ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF 20.871210003555333 0.18003371494288972 1 VC{I|L} 3 7 35.445 0 0 3.641 0 0 640.3335967920482 0 640.3335967920482 0 31.95046257204389 0 0 0 0.9247425010840047 0 0 0 VC{I|L} 3.641 - 49 NaN NaN 120295.7 NaN 9966 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12867 58.393 NaN 785240 35 0 57719 0.261 + 6455 FPIHVQTSL 9 93 521.2901568083132 1040.5657606834263 2 521.2904663085938 MULTI HCD FTMS 0 0 0 12861 125153.5390625 0.14351957799958115 -4 0.106292724609375 6 Unmodified _FPIHVQTSL_ ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7 71.92227651296345 0.008466197542043549 1 [{I|L}P]{M(Oxidation (M))|F}HVQTS{I|L} 9 2 + 48.289 0 0 4.6407 4.6407 80.747 0 0 0 0.06630578899013528 12.98332479720628 0.06630578899013528 0.06630578899013528 0 1.3494850021680094 1.3010299956639813 0.7059771852360797 0 [{I|L}P]{M(Oxidation (M))|F}HVQTS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L};[{I|L}P]{M(Oxidation (M))|F}HV[AG]TS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HV[AG]TS{I|L};[YR]QV[Y{I|L}]S{I|L};[HV]{M(Oxidation (M))|F}[{I|L}P]QTS{I|L};[{I|L}P]{[HG]|PP}V{[MS]|[{M(Oxidation (M))|F}A]}TS{I|L};[YR][AG]V[Y{I|L}]S{I|L};[YR]QV[YT]V{I|L};[HV]{M(Oxidation (M))|F}[{I|L}P][AG]TS{I|L} 4.6407;4.6343;3.7557;3.7494;2.7429;2.3963;2.0456;1.8528;1.7182;1.5114 -;+;-;-;-;-;-;-;-;- + 764 NaN NaN 209874.4 NaN 9967 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12868 58.396 NaN 165070 35 0 27473 0.261 + 29895 VFDLSEKL 8 56 475.7633884982967 NaN 0 475.7635192871094 PEAK HCD FTMS 0 0 0 12861 80361.9921875 1 0 0 7 Unmodified _VFDLSEKL_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 22.736283301280096 0.3829993479967756 1 DD 2 7 20.217 0 0 2.1291 0 0 131.09719828389967 585.3256319635374 716.4228302474371 0 0 0 0 0 0.9247425010840047 0 0 0 DD 2.1291 - 13 + NaN NaN 134694.5 NaN 9968 2898 12861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12870 58.401 NaN 811660 35 0 86749 0.327 + 15665 LPEKEVLVL 9 74 520.3235781676397 1038.6326034020792 2 520.3236083984375 MULTI HCD FTMS 0 0 0 12869 298207.15625 0.5530726370309133 1 -0.03287506103515625 1 Unmodified _LPEKEVLVL_ ENSG00000136940|ENST00000259467|PDCL;nc|ENSG00000136940|Q13371-2|PDCL 57.24910588100465 0.021429789259086996 1 [{I|L}P]EKD{I|L}{I|L}V{I|L} 9 2 + 75.666 0 0 7.2851 7.2851 86.812 0 0 0 16.267186419914097 52.109178215846654 16.267186419914097 3.0102999566398125 0 1.6307196863200843 1.3010299956639813 0.6505149978319906 0 [{I|L}P]EKD{I|L}{I|L}V{I|L};[{I|L}P]EKEV{I|L}V{I|L};[{I|L}P]EKD{I|L}{I|L}{I|L}V;[{I|L}P]EKD{I|L}V{I|L}{I|L};[{I|L}P]EKEV{I|L}{I|L}V;[{I|L}P]EKEVV{I|L}{I|L};[{I|L}P][SG]{I|L}D{I|L}{I|L}V{I|L};[{I|L}P][SG]D{I|L}{I|L}{I|L}V{I|L};[{I|L}P][SG]{I|L}EV{I|L}V{I|L};[{I|L}P][SG]{I|L}D{I|L}{I|L}{I|L}V 7.2851;6.9953;6.299;6.2007;6.0092;5.9109;5.8201;5.7438;5.5302;4.8339 -;+;-;-;-;-;-;-;-;- + 197 NaN NaN 211686.8 NaN 9969 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12871 58.406 NaN 423740 35 0 70375 0.261 + 18840 NAELWQVSW 9 64 566.7748582236685 1131.535163514137 2 566.7750854492188 MULTI HCD FTMS 0 0 0 12869 225809.21875 0.7145968061825291 -7 0.14669036865234375 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}[PG]SVSW 10 6 + 65.775 0 0 5.8129 5.8129 90.596 0 0 0 9.588928626347553 51.324091325304835 9.588928626347553 19.29129463237757 0 2 1.3010299956639813 0.3494850021680094 0.805462187404089 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}[PG]SVSW;{[CT]|[{M(Oxidation (M))|F}G]}SV[HA]{[QN]|[E{I|L}]|[KN]}SW;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}[PG]SW[VS];[YQ]{[QN]|[E{I|L}]|[KN]}[HA]VSW;{[DS]|[MA]|[CV]|TT}A{[QV]|[N{I|L}]|[RA]|[KV]}[PG]SWW;{[CT]|[{M(Oxidation (M))|F}G]}S{[QN]|[E{I|L}]|[KN]}[HA]W[VS];{[DS]|[MA]|[CV]|TT}[H{I|L}]{[DS]|[MA]|[CV]|TT}SWW;[YQ]{[QN]|[E{I|L}]|[KN]}[HA]W[VS] 5.8129;4.108;3.6046;3.5972;3.4242;2.7834;2.7765;2.2727 -;-;-;-;-;-;-;- 309 NaN NaN 152541.2 NaN 9970 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12872 58.409 NaN 328000 35 0 17197 0.261 + 22740 QYESKVFYL 9 86 588.7998534959156 1175.5851540586311 2 588.8012084960938 MULTI HCD FTMS 0 0 0 12869 134565.78125 0.7633663635760094 1 -0.03287506103515625 3 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 74.92900055777586 0.007493270374442853 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}AQQ{I|L} 7 7 41.463 0 0 3.527 0 0 294.1575206962538 0 294.1575206962538 0 20.097295165075924 0 0 0 0.25 0 0.3252574989159953 0.3807196863200844 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}AQQ{I|L} 3.527 - 2244 NaN NaN 139468.4 NaN 9971 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12873 58.412 NaN 232900 35 0 21206 0.261 + 22798 QYLENLEKL 9 59 575.3107925813503 1148.6070322295004 2 575.311279296875 MULTI HCD FTMS 0 0 0 12869 62031.9375 0.46043092377540357 1 -0.03287506103515625 4 Unmodified _QYLENLEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000540706.5_1_16:21899129-21899858:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 21.590151480376914 0.17382222009858564 1 QY{I|L}EN{I|L}EK{I|L} 9 0 + 34.549 0 0 3.0079 3.0079 84.595 0 0 0 17.893812810524924 6.835295873671761 6.835295873671761 9.208187539523756 0 0.6747425010840047 0 0 0 + + QY{I|L}EN{I|L}EK{I|L};QY{I|L}EGG{I|L}EK{I|L};K[{M(Oxidation (M))|F}E]EN{I|L}EK{I|L};K[{M(Oxidation (M))|F}E]EGG{I|L}EK{I|L} 3.0079;2.2062;1.9629;1.1612 +;-;-;- + 444 + NaN NaN 119009.9 NaN 9972 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12874 58.416 NaN 226420 35 0 26442 0.261 -1 EYMEHVYLI 9 56 606.7838077584753 1211.5530625837505 2 607.2854614257812 MULTI HCD FTMS 0 0 0 12869 145378.40625 0.25129153910624846 -5 0.13250350952148438 5 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 1 VVT 3 -1 23.258 0 0 1.9197 0 0 164.04312828647 745.304767985782 909.347896272252 0 0 0 0 0 0 0 0.7059771852360797 0 VVT 1.9197 - 58 + NaN NaN 117745.9 NaN 9973 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12875 58.419 NaN 184010 35 0 14988 0.262 + 18604 MVTSLEESL 9 50 512.7466111126186 1023.4786692920371 2 512.7463989257812 MULTI HCD FTMS 0 0 0 12869 72387.2109375 0.6632689174777526 -2 0.058605194091796875 6 Oxidation (M) _M(Oxidation (M))VTSLEESL_ ENSG00000047410|ENST00000367478|TPR 61.357469665136826 0.01568246967499496 1 [{M(Oxidation (M))|F}V]T{[TV]|[{I|L}S]}EES{I|L} 9 0 + 72.157 0 0 7.0502 7.0502 93.467 0 0 0 22.164537177296495 63.20493438421167 22.164537177296495 25.440680443502757 0 1.4247425010840047 2 0.3807196863200844 0 + + [{M(Oxidation (M))|F}V]T{[TV]|[{I|L}S]}EES{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}EES{I|L} 7.0502;4.5645 +;- + 98 NaN NaN 104865.2 NaN 9974 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12876 58.422 NaN 184950 35 0 17774 0.261 + -1 RTTMGHVL 8 43 465.745196963652 929.475840994104 2 465.7452697753906 MULTI HCD FTMS 0 0 0 12869 57318.359375 0.39427010416135994 -4 0.12570953369140625 7 Oxidation (M) _RTTM(Oxidation (M))GHVL_ REV__ENSG00000130714|ENST00000402686|POMT1;REV__nc|ENSG00000130714|Q9Y6A1-3|POMT1;REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1;REV__nc|ENSG00000130714|Q9Y6A1|POMT1 7.910154910731844 0.5302565402355366 1 QV{I|L} 3 -1 29.693 0 0 3.1946 0 0 571.267501467394 0 571.267501467394 0 13.239087409443187 0 0 0 0.3494850021680094 0 0 0 QV{I|L} 3.1946 - 73 NaN NaN 135090 NaN 9975 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12877 58.426 NaN 46850 35 0 5987.1 0.261 + -1 IPAFFCAL 8 31 469.7439888242812 NaN 0 469.7438659667969 PEAK HCD FTMS 0 0 0 12869 25745.58203125 0.35680456779556874 1 -0.03287506103515625 8 Carbamidomethyl (C) _IPAFFC(Carbamidomethyl (C))AL_ REV__ENSG00000143324|ENST00000367590|XPR1;REV__nc|ENSG00000143324|Q9UBH6-2|XPR1 6.354104778181461 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.74559 0 0 113.08394217769917 724.3147995706535 837.3987417483527 0 0 0 0 0 0 0 0 0 P 0.74559 + + 1 + NaN NaN 89021.3 NaN 9976 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12878 58.429 NaN 138350 35 0 30365 0.261 + 7253 FSYLTTEI 8 47 487.24589152793146 972.477230122663 2 487.2501220703125 MULTI HCD FTMS 0 0 0 12869 30025.279296875 0.06554499924550276 -15 0.33475494384765625 9 Unmodified _FSYLTTEI_ ENSG00000137251|ENST00000259782|TINAG;nc|ENSG00000137251|Q9UJW2-2|TINAG 8.593279151180031 0.5292430274356741 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3 6 22.676 0 0 2.3318 0 0 0 636.285829326041 636.285829326041 11.706962271689747 0 0 0 0 0 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 2.3318 - 9 NaN NaN 105692 NaN 9977 2899 12869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12880 58.434 NaN 1044000 35 0 263600 0.327 -1 0 81 440.7212878422356 879.4280227512712 2 440.7213439941406 MULTI HCD FTMS 0 0 0 12879 611307.25 0.5249702491045748 2 -0.05580902099609375 1 NaN NaN 1 WVE 3 -1 53.355 0 0 6.067 0 0 0 462.21946130924067 462.21946130924067 29.30252152886198 0 0 0 0 0.7134679910804405 2 0.4247425010840047 0 WVE 6.067 - 376 + NaN NaN 236656.4 NaN 9978 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12881 58.438 NaN 317530 35 0 100820 0.261 + 22117 QIIEEDAAL 9 40 501.2612927269284 1000.5080325206568 2 501.26123046875 MULTI HCD FTMS 0 0 0 12879 261227.265625 0.4122398803808521 2 -0.05580902099609375 2 Unmodified _QIIEEDAAL_ ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF 29.84058131909904 0.11198220037953927 1 EDAA{I|L} 5 4 43.928 0 0 4.3906 0 0 483.2692127912125 0 483.2692127912125 0 26.938200260161125 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + EDAA{I|L} 4.3906 + + 20 NaN NaN 129825.3 NaN 9979 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12882 58.442 NaN 126990 35 0 34746 0.261 + 23114 REYLMSGG 8 42 456.7162605808033 911.4179682284066 2 456.7161560058594 MULTI HCD FTMS 0 0 0 12879 77365.203125 0.46904280699693596 2 -0.05580902099609375 3 Unmodified _REYLMSGG_ ENSG00000062282|ENST00000228027|DGAT2;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;ENST00000603865.1_1_11:75507249-75507624:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2 7.289230182591677 0.5311777711368266 1 G[SG] 3 6 10.458 0 0 1.1474 0 0 692.3415394513687 0 692.3415394513687 0 4.9730248405664685 0 0 0 0 0 0 0 G[SG] 1.1474 - 6 NaN NaN 98814.6 NaN 9980 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12883 58.445 NaN 205240 35 0 33523 0.261 + 35933 YYTPITPHL 9 56 552.7900245897755 1103.565496246351 2 552.7900390625 MULTI HCD FTMS 0 0 0 12879 87340.1015625 0.6629149528788907 2 -0.05580902099609375 4 Unmodified _YYTPITPHL_ ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|9|fusion 54.773552608820026 0.024892918755467567 1 YYTP{I|L}TP[H{I|L}] 9 0 + 65.684 0 0 5.952 5.952 92.871 0 0 0 58.23699398972998 5.6424927368725974 5.6424927368725974 55.17728766960431 0 1.6861818737241734 1.6989700043360187 0.5 0 + + YYTP{I|L}TP[H{I|L}];WW[HK]TP[H{I|L}] 5.952;0.95209 +;- + 260 + NaN NaN 106338.7 NaN 9981 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12884 58.449 NaN 121700 35 0 33458 0.262 + 4107 ESTLPGTVI 9 39 458.75299863310283 915.4914443330057 2 458.7530517578125 MULTI HCD FTMS 0 0 0 12879 99162.3515625 0.49883928357378354 3 -0.09182357788085938 5 Unmodified _ESTLPGTVI_ ENSG00000113205|ENST00000231130|PCDHB3;PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant 21.74664581756881 0.17247014374749275 1 TV{I|L} 3 6 44.253 0 0 4.8337 0 0 584.2801380841812 0 584.2801380841812 0 43.143265708843046 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + TV{I|L} 4.8337 + + 11 NaN NaN 99879.7 NaN 9982 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12885 58.452 NaN 233940 35 0 34460 0.261 + 8645 HFDLNLRQF 9 49 595.3099208681535 1188.605288803107 2 595.3095703125 MULTI HCD FTMS 0 0 0 12879 106654.703125 0.8686936394057163 -1 0.03287506103515625 6 Unmodified _HFDLNLRQF_ ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant 59.368380827593164 0.01846506874148156 1 H{M(Oxidation (M))|F}D{I|L}N{I|L} 6 3 67.894 0 0 5.7121 0 0 0 446.21604334049067 446.21604334049067 51.695925227640984 0 0 0 0 2.024227503252014 0 0 0.3494850021680094 + H{M(Oxidation (M))|F}D{I|L}N{I|L} 5.7121 + + 122 + NaN NaN 129091.2 NaN 9983 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12886 58.455 NaN 263270 35 0 27218 0.261 + 26989 SYLPHAPPFA 10 70 550.2810141412148 1098.5474753492294 2 550.2816772460938 MULTI HCD FTMS 0 0 0 12879 61174.33984375 0.2281281282593622 -7 0.17247390747070312 7 Unmodified _SYLPHAPPFA_ ENSG00000171223|ENST00000302754|JUNB 46.020951573049366 0.09315764076686055 1 PM{I|L}A 4 8 26.191 0 0 2.3841 0 0 668.3281117169937 0 668.3281117169937 0 6.485709800639153 0 0 0 0.805462187404089 0 0 0 PM{I|L}A 2.3841 - 100 NaN NaN 129316.5 NaN 9984 2900 12879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12888 58.46 NaN 1304800 35 0 271650 0.327 + 17051 LYKFSADEF 9 96 560.2718420797719 1118.5291312263437 2 560.2894897460938 MULTI HCD FTMS 0 0 0 12887 50590.22265625 0.42349095323368613 3 -0.10177993774414062 1 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 32.78568957990786 0.09846250359632436 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TS{I|L}{I|L}DTP 9 7 63.716 0 0 5.6964 0 0 0 144.01113133784148 144.01113133784148 9.237889924839322 0 0 0 0 0 2 1.3851518780601924 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TS{I|L}{I|L}DTP 5.6964 - 3356 NaN NaN 279349.9 NaN 9985 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12889 58.465 NaN 2163900 35 0 568350 0.261 + 31992 VYPLMKEYF 9 80 603.2993101230447 1204.5840673128894 2 603.2987670898438 MULTI HCD FTMS 0 0 0 12887 650215.9375 0.15494985879223572 -9 0.2057647705078125 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 82.5293158979368 0.005033931517079822 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 76.693 0 0 6.3667 6.3667 85.822 0 0 0 5.09729516507592 5.09729516507592 5.09729516507592 4.657067017436717 0 2.1549471895720984 2 0.6549471895720984 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]E{[HG]|PP}{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}{[HG]|PP}EP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[Y{I|L}]D{[HG]|PP}{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]EYVV{[MG]|[TS]}V{M(Oxidation (M))|F} 6.3667;5.9801;5.9436;5.8245;5.1902;5.1536;4.7631;4.7265;4.5697;4.159 -;-;-;+;-;-;-;-;-;- + 2384 NaN NaN 412843.7 NaN 9986 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12890 58.468 NaN 418280 35 0 64151 0.261 + 5706 FPAGYMYPSM 10 81 598.2437474687239 1194.4729420042477 2 598.2440795898438 MULTI HCD FTMS 0 0 0 12887 113032.7578125 0.613462715083273 3 -0.10177993774414062 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 66.802 0 0 5.5926 0 0 63.99408221411097 0 63.99408221411097 0 54.5622223880288 0 0 0 0.9247425010840047 0 2.5158715643802765 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.5926 - 607 + NaN NaN 142081.7 NaN 9987 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12891 58.472 NaN 248170 35 0 41447 0.261 + 8646 HFDLNLRQF 9 56 595.3099208681535 1188.605288803107 2 595.3092651367188 MULTI HCD FTMS 0 0 0 12887 122775.96875 1 0 0 4 Unmodified _HFDLNLRQF_ ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant 49.55428908609986 0.03219431099695407 1 H{M(Oxidation (M))|F}D{I|L}N{I|L} 6 3 56.459 0 0 4.75 0 0 0 446.2147616022094 446.2147616022094 38.499934467764874 0 0 0 0 0.8494850021680094 0 0 0.3807196863200844 + H{M(Oxidation (M))|F}D{I|L}N{I|L} 4.75 + + 80 + NaN NaN 117396.3 NaN 9988 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12892 58.475 NaN 137330 35 0 16258 0.261 + 17427 LYRQYFEEI 9 48 630.8169467118187 1259.6193404904373 2 630.8170776367188 MULTI HCD FTMS 0 0 0 12887 51160.09765625 0.5809973416136085 -1 0.0261993408203125 5 Unmodified _LYRQYFEEI_ ENSG00000124160|ENST00000290231|NCOA5 19.625955294349634 0.19079243933902879 1 {M(Oxidation (M))|F}EE{I|L} 4 5 35.745 0 0 2.8378 0 0 723.3707747744078 0 723.3707747744078 0 26.792972196075127 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}EE{I|L} 2.8378 + + 18 NaN NaN 101001 NaN 9989 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12893 58.478 NaN 189780 35 0 23565 0.262 + 19484 NPYSQLLII 9 66 530.805701989481 1059.596851045762 2 530.79296875 MULTI HCD FTMS 0 0 0 12887 37416.65234375 0.8978044398970999 3 -0.10177993774414062 6 Unmodified _NPYSQLLII_ ENST00000392379.5_1_3:197238637-197238769:-|nuORF 7.289230182591677 0.29575926068275815 1 NPSV 4 6 20.177 0 0 1.9042 0 0 0 659.3545015924436 659.3545015924436 7.703037561203843 0 0 0 0 0 0 0 0 NPSV 1.9042 - 76 + NaN NaN 111416.8 NaN 9990 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12894 58.482 NaN 880140 35 0 104240 0.263 + 21639 PYRLIFEKF 9 77 404.8973420405621 1211.6701967218862 3 404.89715576171875 MULTI HCD FTMS 0 0 0 12887 119435.1875 0.22736261517519574 -1 0.0261993408203125 7 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 64.69154705217129 0.011018323735584382 1 PYR{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 97.327 0 0 8.0325 8.0325 94.127 0 0 0 46.85968122010853 16.478174818886373 16.478174818886373 16.82897191296685 0 2.805945812348389 1.6989700043360187 0.28872548999643577 0.3807196863200844 + + PYR{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}KE;[Y{I|L}][RP]{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YR]P{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}T[VG]{M(Oxidation (M))|F};P[VP][HV]{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F};P[VP]E{M(Oxidation (M))|F}{I|L}{I|L}R{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[K{I|L}]{I|L}{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 8.0325;6.6436;6.1877;5.3371;5.2272;5.2225;5.2052;5.1647;4.6314;4.4176 +;+;-;-;-;-;-;-;-;- + 762 + NaN NaN 215299.6 NaN 9991 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12895 58.485 NaN 1543800 35 0 305020 0.261 + 20623 PFAKPLPTF 9 98 509.29197269447843 1016.5693924557569 2 509.2912902832031 MULTI HCD FTMS 0 0 0 12887 26233.189453125 0.8280418133159728 1 -0.02960968017578125 8 Unmodified _PFAKPLPTF_ ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400 20.453626601364224 0.18364154288633264 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[TV]|[{I|L}S]}YAV 8 7 33.097 0 0 3.2557 0 0 0 145.12361228316857 145.12361228316857 10.31743128760553 0 0 0 0 0 2 0.2742275032520141 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[TV]|[{I|L}S]}YAV 3.2557 - 406 NaN NaN 315588.8 NaN 9992 2901 12887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12897 58.49 NaN 1656800 35 0 99160 0.327 + 6456 FPIHVQTSL 9 121 521.2901568083132 1040.5657606834263 2 521.2901611328125 MULTI HCD FTMS 0 0 0 12896 872031.125 1 0 0 1 Unmodified _FPIHVQTSL_ ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7 147.05914393524117 1.1935124485855994E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L} 9 0 + 90.261 0 0 8.6743 8.6743 94.12 0 0 0 19.28257082263869 45.4230064202143 19.28257082263869 12.26280941356464 0 2.0114393726401687 1.2218487496163564 0.9802046884880938 0.3054621874040891 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HV[AG]TS{I|L};{M(Oxidation (M))|F}P{I|L}HVQTS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}H[KA]ES{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[RP][DP]S{I|L};{[TV]|[{I|L}S]}TQVHP{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PHV{I|L}QTS{I|L};[YR]{M(Oxidation (M))|F}KVES{I|L};{[MG]|[TS]}{I|L}QVHP{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}TQVHP{I|L}{M(Oxidation (M))|F} 8.6743;7.4958;6.1573;5.2015;4.4354;4.3429;3.6126;3.5354;3.4922;3.4394 +;-;+;-;-;-;-;-;-;- + 2320 NaN NaN 330565.4 NaN 9993 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12898 58.494 NaN 719750 35 0 145840 0.261 + 12643 KWFFQKLRF 9 72 433.91669708106457 1298.7282618433937 3 433.9168395996094 MULTI HCD FTMS 0 0 0 12896 385930.46875 0.5204063693506331 4 -0.11790084838867188 2 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 67.83816525789305 0.009787749748478139 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 85.672 0 0 6.5966 6.5966 86.38 0 0 0 15.351584312837048 10.969100130080562 10.969100130080562 4.771212547196626 0 1.579689690656103 0 0 0.7302046884880937 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 6.5966;6.2292;5.8876;5.752;5.5202;5.4146;5.3846;5.043;4.7055;4.6756 +;-;-;-;-;-;-;-;-;- + 420 + NaN NaN 188846.7 NaN 9994 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12899 58.498 NaN 264750 35 0 29159 0.261 + -1 VCSLFCSTLT 10 63 565.7670943376254 NaN 0 565.766845703125 PEAK HCD FTMS 0 0 0 12896 183508.6875 1 0 0 3 Carbamidomethyl (C) _VCSLFC(Carbamidomethyl (C))STLT_ REV__ENSG00000112118|ENST00000596288|MCM3;REV__MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;REV__nc|ENSG00000112118|P25205-2|MCM3 19.256988751693697 0.2866536677172102 1 CSV 3 -1 23.372 0 0 2.0692 0 0 99.06672489767523 738.3209932916624 837.3877181893376 0 0 0 0 0 0.8807196863200843 0 0.4247425010840047 0 CSV 2.0692 - 74 + NaN NaN 122824.9 NaN 9995 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12900 58.501 NaN 136730 35 0 8558.2 0.261 + 20001 NYIEKVVAI 9 51 524.8055838473064 1047.5966147614126 2 524.805419921875 MULTI HCD FTMS 0 0 0 12896 62089.94921875 0.25039775288602023 4 -0.11790084838867188 4 Unmodified _NYIEKVVAI_ ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 20.41453444215458 0.18397929046831515 1 [YN]{I|L}A 4 5 39.297 0 0 3.7511 0 0 0 583.3563326471311 583.3563326471311 14.080306233405295 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}A 3.7511 - 31 + NaN NaN 111413.3 NaN 9996 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12901 58.504 NaN 336590 35 0 36107 0.261 + 8393 GYNVKFDMF 9 73 568.7575956587906 1135.500638384381 2 568.7581787109375 MULTI HCD FTMS 0 0 0 12896 206410.75 0.9623164090019277 -2 0.05580902099609375 5 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ ENSG00000167468|ENST00000354171|GPX4;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;ENST00000589115.5_1_19:1105440-1106426:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4 70.33199760932243 0.0089807860198535 1 [YG]NVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 89.575 0 0 7.8886 7.8886 91.246 0 0 0 67.36880000633434 14.09256854528806 14.09256854528806 9.208187539523749 0 2.6989700043360187 2 0.2742275032520141 0 + + [YG]NVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GGVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]NV[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};[YG]N[HC]KV[C(Carbamidomethyl (C))R];[YG]NV[YT]{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YG]NV[YT]{M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT};[YG]GG[HC]KV[C(Carbamidomethyl (C))R];[YG]GGV[YT]{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YG][KG][C(Carbamidomethyl (C))H]V[C(Carbamidomethyl (C))R];[YG]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[YE]K{M(Oxidation (M))|F} 7.8886;7.0777;4.5871;4.3479;3.9513;3.6886;3.537;3.1404;3.137;3.0986 +;-;-;-;-;-;-;-;-;- + 833 + NaN NaN 137031.7 NaN 9997 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12902 58.514 NaN 5141200 35 0 764770 0.261 + 19505 NRGECTEDKL 10 130 582.7697221623883 1163.5248913915766 2 582.77001953125 MULTI HCD FTMS 0 0 0 12896 128800.1953125 0.8303290125373125 -12 0.2563018798828125 6 Unmodified _NRGECTEDKL_ REV__ENST00000506649.5_1_6:109690056-109702985:-|nuORF 13.042465956692817 0.38911719078024076 1 KD{I|L}{[MG]|[TS]}{I|L}D[K{I|L}] 9 -1 53.093 0 0 4.5631 0 0 131.94574620107238 0 131.94574620107238 0 10.304935025867103 0 0 0 0 0 1.7530834337684311 0.819341519366547 KD{I|L}{[MG]|[TS]}{I|L}D[K{I|L}] 4.5631 - 8039 + NaN NaN 870263.3 NaN 9998 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12903 58.518 NaN 508690 35 0 47381 0.261 + 26990 SYLPHAPPFA 10 87 550.2810141412148 1098.5474753492294 2 550.7843017578125 MULTI HCD FTMS 0 0 0 12896 108146.2109375 0.5709625869299465 -5 0.14728927612304688 7 Unmodified _SYLPHAPPFA_ ENSG00000171223|ENST00000302754|JUNB 78.14939416004806 0.007929027632678966 1 [Y{I|L}]S[PA]HPP{M(Oxidation (M))|F}A 10 4 + 50.739 0 0 4.6188 4.6188 81.227 0 0 0 1.108339156354674 16.53212513775344 1.108339156354674 1.108339156354674 0 1.305462187404089 1.154901959985743 0.6382104921644451 0 [Y{I|L}]S[PA]HPP{M(Oxidation (M))|F}A;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[PA]HPP{M(Oxidation (M))|F}A;[Y{I|L}]GPTHPP{M(Oxidation (M))|F}A;[YT]V[PA]HPP{M(Oxidation (M))|F}A;{[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}P]HPP{M(Oxidation (M))|F}A;[Y{I|L}]GHPTPP{M(Oxidation (M))|F}A;[YT]G[{I|L}P]HPP{M(Oxidation (M))|F}A;[Y{I|L}]G[KA][YQ]WA;[Y{I|L}]G[KA]A[YG]WA;[Y{I|L}][KQ][YQ]WA 4.6188;4.5179;3.8921;3.4265;3.3656;2.8672;2.2742;2.0149;1.9011;1.7869 -;-;-;-;-;-;-;-;-;- 1266 NaN NaN 154849.3 NaN 9999 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12904 58.521 NaN 3645200 35 0 514100 0.261 + 1485 AYTPFHAVL 9 106 509.7715634460214 1017.5285739588428 2 509.77105712890625 MULTI HCD FTMS 0 0 0 12896 1627946.625 0.7438161119370295 -1 0.02960968017578125 8 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 170.39725721280982 3.610137724047835E-09 1 AYTP{M(Oxidation (M))|F}HAV{I|L} 9 0 + 83.743 0 0 8.23 8.23 96.936 0 0 0 54.06920436746353 8.256886463274284 8.256886463274284 59.489451846718396 0 2.193672679568534 2 0.8494850021680094 0 + + AYTP{M(Oxidation (M))|F}HAV{I|L};[HA]{M(Oxidation (M))|F}VPT{I|L}YA;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HA]VT{I|L}YA;[HA]V{M(Oxidation (M))|F}PT{I|L}YA;[HA]{M(Oxidation (M))|F}PVT{I|L}YA;[HA]{M(Oxidation (M))|F}VPTAY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HA]VTAY{I|L};[HA]V{M(Oxidation (M))|F}PTAY{I|L};[HA]{M(Oxidation (M))|F}V{[{M(Oxidation (M))|F}D]|MM}AV{I|L};[HA]{M(Oxidation (M))|F}PVTAY{I|L} 8.23;2.3835;2.2824;2.2607;2.2093;2.0902;1.989;1.9674;1.924;1.9159 +;-;-;-;-;-;-;-;-;- + 1274 + NaN NaN 637208.4 NaN 10000 2902 12896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12906 58.526 NaN 1805000 35 0 195580 0.327 + 35843 YYQNYFEKL 9 102 634.3036450504073 1266.5927371676146 2 634.3036499023438 MULTI HCD FTMS 0 0 0 12905 1324362.875 0.6477005533412423 1 -0.03615570068359375 1 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 209.87028166699892 5.4766109851150774E-18 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 130.98 0 0 10.341 10.341 94.028 0 0 0 95.86574344772764 12.024597658517052 12.024597658517052 9.208187539523749 0 3.048455006504028 2 1.8341218823962109 1.3556270500406935 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}E{I|L}K;YYQNYE{M(Oxidation (M))|F}K{I|L};YYNQY{M(Oxidation (M))|F}E{I|L}K;YYN[AG]Y{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L} 10.341;9.6138;9.6138;8.8902;8.351;8.3465;7.9395;7.8127;7.624;7.624 +;-;-;-;-;-;-;-;-;- + 9385 + NaN NaN 356375.6 NaN 10001 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12907 58.53 NaN 4205400 35 0 684440 0.261 -1 0 137 582.3449039786885 1162.675255024177 2 582.3450317382812 MULTI HCD FTMS 0 0 0 12905 4503039 0.9315083540247204 -1 0.036014556884765625 2 NaN NaN 1 YAWV{I|L}DK{I|L} 8 -1 77.564 0 0 6.6712 0 0 156.12561188613512 0 156.12561188613512 0 38.43704052456225 0 0 0 2.899649864804614 0 1.836696871556164 0.5866968715561641 YAWV{I|L}DK{I|L} 6.6712 - 8884 + NaN NaN 737704.4 NaN 10002 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12908 58.534 NaN 878940 35 0 101850 0.261 + 4622 EYMEHVYLI 9 83 606.7838077584753 1211.5530625837505 2 606.7841186523438 MULTI HCD FTMS 0 0 0 12905 596868.625 0.8261145290703292 -1 0.036014556884765625 3 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 117.59872219059416 0.0017018906413822257 1 [YE]{M(Oxidation (M))|F}EHVY{I|L}{I|L} 9 0 + 76.511 0 0 6.3151 6.3151 90.534 0 0 0 19.34426788005242 16.478174818886373 16.478174818886373 13.979400086720375 0 2.281718309096375 1.6989700043360187 2.0752574989159953 0 + + [YE]{M(Oxidation (M))|F}EHVY{I|L}{I|L};[YE]{M(Oxidation (M))|F}EHV{I|L}Y{I|L};[YE]{M(Oxidation (M))|F}EH{I|L}VY{I|L};[YE]{M(Oxidation (M))|F}{[HG]|PP}[NG]Y{I|L}{I|L} 6.3151;5.1613;3.8868;2.3087 +;-;-;- + 322 NaN NaN 219828.2 NaN 10003 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12909 58.537 NaN 909560 35 0 72328 0.261 + 32948 YAISSSVISF 10 84 537.2797794216573 1072.5450059101145 2 537.2761840820312 MULTI HCD FTMS 0 0 0 12905 315223.3125 0.8119435023646395 1 -0.03615570068359375 4 Unmodified _YAISSSVISF_ ENSG00000184845|ENST00000393752|DRD1 65.23502041540118 0.023231415588018726 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGKKC(Carbamidomethyl (C)){M(Oxidation (M))|F} 9 5 + 80.672 0 0 7.5215 7.5215 90.699 0 0 0 20.382666847163136 59.86957297830479 20.382666847163136 9.208187539523749 0 1.9247425010840047 1.6989700043360187 0.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGKKC(Carbamidomethyl (C)){M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGKK[CG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SG{M(Oxidation (M))|F}S{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SG{M(Oxidation (M))|F}S[KS]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGKKY[SG];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ]{I|L}{[ES]|[DT]|[{I|L}C]};YY[RV]GS{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ][KS]N;{[TV]|[{I|L}S]}{M(Oxidation (M))|F}SGKKC(Carbamidomethyl (C)){M(Oxidation (M))|F};YYRRS{I|L}{[ES]|[DT]|[{I|L}C]} 7.5215;6.663;6.3395;6.1992;5.6854;5.121;5.0603;4.9807;4.5389;4.4677 -;-;-;-;-;-;-;-;-;- 503 NaN NaN 225699.4 NaN 10004 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12910 58.54 NaN 952470 35 0 134710 0.261 + 1698 CGLLGFVLDLK 11 114 589.335310434525 1176.65606793585 2 589.3343505859375 MULTI HCD FTMS 0 0 0 12905 495217.6875 1 0 0 5 Unmodified _CGLLGFVLDLK_ ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2 56.17704186161178 0.05605286262343611 1 {I|L}[YG]AWV{I|L}DK{I|L} 10 7 + 65.167 0 0 5.5384 5.5384 83.951 0 0 0 19.145051192807955 4.172026352241488 4.172026352241488 3.5322848987562026 0 2.611407999752478 0 1.4258337024346173 1.2031198197908841 {I|L}[YG]AWV{I|L}DK{I|L};{I|L}[YQ]WV{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[W{M(Oxidation (M))|F}]DK{I|L};{I|L}[YV][WQ]{I|L}DK{I|L};[YQ]{I|L}WV{I|L}DK{I|L};{NN|[MP]|[D{I|L}]|[EV]}K[W{M(Oxidation (M))|F}]{I|L}DK{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}DK{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}[W{M(Oxidation (M))|F}]DK{I|L} 5.5384;5.2382;5.1838;4.9714;4.5658;4.5532;4.4418;4.1394;3.9271;3.5215 -;-;-;-;-;-;-;-;-;- 1884 + NaN NaN 234097.8 NaN 10005 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12911 58.544 NaN 264260 35 0 40930 0.261 -1 MPQSMPEYAL 10 62 591.7620134829816 1181.5094740327631 2 591.7622680664062 MULTI HCD FTMS 0 0 0 12905 139490.03125 0.8378278923340495 1 -0.03615570068359375 6 Oxidation (M) _MPQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 11.494710602746466 0.4035943721457025 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QQYYYA{I|L} 9 -1 + 38.579 0 0 3.2652 3.2652 88.454 0 0 0 3.1336373073770645 20.58595260500877 3.1336373073770645 38.57894990110105 0 0.9247425010840047 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QQYYYA{I|L} 3.2652 - 129 NaN NaN 123674.9 NaN 10006 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12912 58.547 NaN 933700 35 0 251240 0.261 + 29787 VEGLFFKDLK 10 106 598.3403253026898 1194.6660976721796 2 598.3401489257812 MULTI HCD FTMS 0 0 0 12905 304160.0625 1 0 0 7 Unmodified _VEGLFFKDLK_ ENSG00000144406|ENST00000673920|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80 16.149105407346934 0.3600587335443843 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 9 28.466 0 0 2.3827 0 0 64.19185049084793 0 64.19185049084793 0 1.2730438379693254 0 0 0 0 0 1.7346368802282015 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.3827 - 591 + NaN NaN 226584.5 NaN 10007 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12913 58.55 NaN 658310 35 0 112350 0.261 -1 GYSYQCILF 9 84 575.7644716446426 1149.5143903560852 2 575.7842407226562 MULTI HCD FTMS 0 0 0 12905 11367.6142578125 0.6739154045604298 4 -0.11145782470703125 8 Carbamidomethyl (C) _GYSYQC(Carbamidomethyl (C))ILF_ ENSG00000222018|ENST00000410005|C21orf140 16.942295170755138 0.21397866736869717 1 [Y{I|L}]S{[QG]|[NA]}VE[HA]{M(Oxidation (M))|F} 10 -1 + 28.879 0 0 2.5122 2.5122 79.627 0 0 0 6.047663267553176 3.182503180159344 3.182503180159344 1.76091259055681 0 0.5 2 0 0.4247425010840047 [Y{I|L}]S{[QG]|[NA]}VE[HA]{M(Oxidation (M))|F};[Y{I|L}]S{[{M(Oxidation (M))|F}H]|[RQ]}E[HA]{M(Oxidation (M))|F};[Y{I|L}]S{[QG]|[NA]}VEPEE;[Y{I|L}]S{[{M(Oxidation (M))|F}H]|[RQ]}[HM]C{I|L};[QP]E{[HG]|PP}VE[HA]{M(Oxidation (M))|F};[QP]E{[HG]|PP}VEPEE;[QP]E{[WT]|[RM]}[DV]E{M(Oxidation (M))|F};[QP][WH]VEPEE;[Y{I|L}][{M(Oxidation (M))|F}V][WM][YE];[QP]E[RH]EPEE 2.5122;2.3591;2.2354;1.4014;0.77238;0.49552;0.466;0.45102;0.38129;0.34233 -;-;-;-;-;-;-;-;-;- 594 NaN NaN 187946.7 NaN 10008 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12914 58.554 NaN 246050 35 0 30954 0.261 + 15786 LPHFDESTF 9 58 546.7551989485326 1091.495844963865 2 546.7542114257812 MULTI HCD FTMS 0 0 0 12905 124564.8046875 1 0 0 9 Unmodified _LPHFDESTF_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 26.88365393820708 0.12808753336095696 1 ST{M(Oxidation (M))|F} 3 6 40.445 0 0 3.7055 0 0 738.33178902656 0 738.33178902656 0 24.960762528683702 0 0 0 1 0 0.4247425010840047 0 + ST{M(Oxidation (M))|F} 3.7055 + + 59 NaN NaN 124936.8 NaN 10009 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12915 58.557 NaN 189710 35 0 11104 0.261 + 710 AQAKIYWNL 9 69 553.8035779142784 1105.5926028953568 2 553.8034057617188 MULTI HCD FTMS 0 0 0 12905 89973.1171875 0.8691915823832264 1 -0.03615570068359375 10 Unmodified _AQAKIYWNL_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 34.40172386719151 0.0910440009062557 1 YWN{I|L} 4 5 39.315 0 0 3.556 0 0 511.3112049787125 0 511.3112049787125 0 21.070983347957707 0 0 0 0.7134679910804405 0 0 0.3252574989159953 + YWN{I|L} 3.556 + + 97 NaN NaN 108605.4 NaN 10010 2903 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12917 58.562 NaN 737300 35 0 119610 0.327 + 18841 NAELWQVSW 9 79 566.7748582236685 1131.535163514137 2 566.77490234375 MULTI HCD FTMS 0 0 0 12916 295409.5 0.9348541498196818 -2 0.07217025756835938 1 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 36.12702656103203 0.08312389501731911 1 [YR]{M(Oxidation (M))|F}STSVSW 9 6 + 74.732 0 0 6.6045 6.6045 86.08 0 0 0 4.022700835509227 4.022700835509227 4.022700835509227 4.022700835509227 0 2.888210492164445 0 1.1747425010840047 0 [YR]{M(Oxidation (M))|F}STSVSW;[YR]AYTSVSW;[YR]ASTYVSW;[YR]{[SA]|[TG]}TYVSW;[YR][YT]ASVSW;[YR]{M(Oxidation (M))|F}STWS[VS];[YR]{M(Oxidation (M))|F}STSW[VS];[YR]ASTS[YV]W;[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS{[DA]|[EG]};[YR]{[SA]|[TG]}TYW[VS] 6.6045;6.249;5.7658;5.6752;5.4932;4.4841;4.3962;4.0208;3.9477;3.4669 -;-;-;-;-;-;-;-;-;- 1142 NaN NaN 195790.9 NaN 10011 2904 12916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12918 58.566 NaN 497490 35 0 62079 0.261 + 7650 FYISPVNKL 9 79 540.8085624168976 1079.6025719005952 2 540.8082275390625 MULTI HCD FTMS 0 0 0 12916 112165.71875 0.6724080357310959 1 -0.022838592529296875 2 Unmodified _FYISPVNKL_ AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;ENSG00000105778|ENST00000318709|AVL9;nc|ENSG00000105778|Q8NBF6-2|AVL9 56.17704186161178 0.022929533404884107 1 [Y{I|L}]{M(Oxidation (M))|F}S[VP]N[K{I|L}] 9 2 + 45.18 0 0 4.1849 4.1849 80.292 0 0 0 3.2390874094431865 0.4845500650402812 0.4845500650402812 0.4845500650402812 0 1.4247425010840047 1.5228787452803376 0.6549471895720984 0 [Y{I|L}]{M(Oxidation (M))|F}S[VP]N[K{I|L}];[Y{I|L}]{M(Oxidation (M))|F}S[VP]Q{[QV]|[N{I|L}]|[RA]|[KV]};[Y{M(Oxidation (M))|F}]{I|L}S[VP]N[K{I|L}];[Y{M(Oxidation (M))|F}]{I|L}S[VP]Q{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]{M(Oxidation (M))|F}S[VP]GG[K{I|L}];[Y{I|L}]{M(Oxidation (M))|F}S[VP][AG]{[QV]|[N{I|L}]|[RA]|[KV]};[Y{M(Oxidation (M))|F}]{I|L}S[VP]GG[K{I|L}];[Y{M(Oxidation (M))|F}]{I|L}S[VP][AG]{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}[{I|L}T]N[K{I|L}];[Y{I|L}]{[ES]|[DT]|[{I|L}C]}[{I|L}T]Q{[QV]|[N{I|L}]|[RA]|[KV]} 4.1849;4.14;3.8848;3.84;3.3319;3.2871;3.0319;2.987;0.79691;0.75203 -;-;+;-;-;-;-;-;-;- + 292 NaN NaN 158096.2 NaN 10012 2904 12916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12919 58.57 NaN 630360 35 0 101670 0.261 + 6401 FPHKFEISF 9 75 576.2984222914271 1150.582291649654 2 576.2984619140625 MULTI HCD FTMS 0 0 0 12916 134513.53125 0.8251459004112279 1 -0.022838592529296875 3 Unmodified _FPHKFEISF_ ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 24.990960013464015 0.14443998892849796 1 [Y{I|L}]S{[QG]|[NA]}V[EP]{I|L} 9 9 25.212 0 0 2.1912 0 0 0 161.07030369482905 161.07030369482905 1.500606022938701 0 0 0 0 0 1.6989700043360187 0.3494850021680094 0 [Y{I|L}]S{[QG]|[NA]}V[EP]{I|L} 2.1912 - 323 NaN NaN 180386.1 NaN 10013 2904 12916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12920 58.573 NaN 249870 35 0 45925 0.261 -1 WCEAGIYL 8 56 506.2339397312328 1010.4533265292656 2 506.234130859375 MULTI HCD FTMS 0 0 0 12916 94946.8671875 0.6376734539938178 4 -0.108184814453125 4 Carbamidomethyl (C) _WC(Carbamidomethyl (C))EAGIYL_ ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182948954-183027611:-|nuORF;nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2 8.593279151180031 0.5292430274356741 1 Y{I|L} 2 -1 25.969 0 0 2.57 0 0 716.2956644309418 0 716.2956644309418 0 18.521825181113627 0 0 0 0.5 0 0 0 Y{I|L} 2.57 + + 15 NaN NaN 116058.4 NaN 10014 2904 12916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12921 58.577 NaN 297080 35 0 34692 0.261 + 19852 NYAWVYYHM 9 65 631.7688949312696 1261.5232369293392 2 631.7694702148438 MULTI HCD FTMS 0 0 0 12916 134750.921875 0.4682884954510515 -6 0.18706512451171875 5 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 101.72198241140316 0.004218805956062179 1 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 95.142 0 0 7.5418 7.5418 92.096 0 0 0 16.747425010840047 16.478174818886373 16.478174818886373 11.505149978319906 0 2.6989700043360187 1.6989700043360187 0 1.4049471895720984 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]WTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWY[WE][KC];[YN]AWE[WY][KC];[WY]NAYVYH{M(Oxidation (M))|F};[WY]{[QG]|[NA]}YTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]NAY[WE][KC];[WY]NAE[WY][KC] 7.5418;6.6298;5.7461;3.5479;3.2325;2.93;2.5155;1.1238;0.80831 -;-;-;-;-;-;-;-;- 750 NaN NaN 124189.1 NaN 10015 2904 12916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12922 58.58 NaN 186350 35 0 15783 0.262 -1 FSCINANNI 9 59 526.7438885258473 1051.4732241184945 2 526.7432250976562 MULTI HCD FTMS 0 0 0 12916 54723.24609375 0.2144625762628294 6 -0.16069412231445312 6 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))INANNI_ ENSG00000169154|ENST00000307599|GOT1L1 18.1463463914782 0.20357593197100715 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DK{I|L}{I|L}C 8 -1 47.842 0 0 4.55 0 0 0 128.97819520701276 128.97819520701276 14.654725401081734 0 0 0 0 0 2 0.3252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DK{I|L}{I|L}C 4.55 - 104 NaN NaN 109042.5 NaN 10016 2904 12916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12924 58.585 NaN 307950 35 0 67525 0.327 + 31287 VWFPGGAF 8 59 440.7212878422356 879.4280227512712 2 440.7213134765625 MULTI HCD FTMS 0 0 0 12923 126352.625 0.10850741426879351 7 -0.19358444213867188 1 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.5120171699125776 1 WV 2 7 42.206 0 0 4.7993 0 0 0 591.2576855855839 591.2576855855839 12.240378209512315 0 0 0 0 0.4247425010840047 2 0 0 WV 4.7993 - 68 + NaN NaN 131657.2 NaN 10017 2905 12923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12925 58.589 NaN 323700 35 0 32848 0.261 + 19719 NYAQVLDKF 9 71 549.2851606213198 1096.5557683094396 2 549.28515625 MULTI HCD FTMS 0 0 0 12923 151873.984375 0.7377102307963141 -1 0.022838592529296875 2 Unmodified _NYAQVLDKF_ ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF;nc|ENSG00000153317|Q9ULH1-2|ASAP1 114.18643581695662 0.002258955990713129 1 [YN]AQV{I|L}DK{M(Oxidation (M))|F} 9 0 + 121.69 0 0 11.098 11.098 94.245 0 0 0 17.557809497117844 16.478174818886373 16.478174818886373 9.208187539523749 0 3.305462187404089 1.6989700043360187 0 2.004432191740108 + + [YN]AQV{I|L}DK{M(Oxidation (M))|F};[YN]A[AG]V{I|L}DK{M(Oxidation (M))|F};Q[YG]QV{I|L}DK{M(Oxidation (M))|F};[YN]AQV{I|L}N[Y{I|L}];Q[YG][AG]V{I|L}DK{M(Oxidation (M))|F};[YN]AQV{I|L}GG[Y{I|L}];[YN]A[AG]V{I|L}N[Y{I|L}];[YN]A[AG]V{I|L}GG[Y{I|L}];Q[YG]QV{I|L}N[Y{I|L}];Q[YG][AG]V{I|L}N[Y{I|L}] 11.098;10.258;6.9421;6.8822;6.1024;6.0425;6.0425;4.8595;4.3278;3.4881 +;-;-;-;-;-;-;-;-;- + 394 NaN NaN 151376.1 NaN 10018 2905 12923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12926 58.593 NaN 261370 35 0 26741 0.261 + -1 RTTMGHVL 8 52 465.745196963652 929.475840994104 2 465.7449645996094 MULTI HCD FTMS 0 0 0 12923 113213.7109375 0.7787519058560322 2 -0.052463531494140625 3 Oxidation (M) _RTTM(Oxidation (M))GHVL_ REV__ENSG00000130714|ENST00000402686|POMT1;REV__nc|ENSG00000130714|Q9Y6A1-3|POMT1;REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1;REV__nc|ENSG00000130714|Q9Y6A1|POMT1 12.531546534597751 0.5015908124873912 1 V{NN|[MP]|[D{I|L}]|[EV]}QV{I|L} 6 -1 30.367 0 0 3.2671 0 0 244.08825881172032 0 244.08825881172032 0 13.3771376077312 0 0 0 0.6989700043360187 0 0.4247425010840047 0 V{NN|[MP]|[D{I|L}]|[EV]}QV{I|L} 3.2671 - 136 NaN NaN 119847.2 NaN 10019 2905 12923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12927 58.596 NaN 105960 35 0 16506 0.261 -1 0 44 499.27508825769013 498.26781179109014 1 499.25872802734375 MULTI HCD FTMS 0 0 0 12923 20290.568359375 0.053700337180834425 9 -0.24930953979492188 4 NaN NaN 1 {M(Oxidation (M))|F}[Q{I|L}] 3 -1 6.7956 0 0 1.3638 0 0 92.0456571053464 0 92.0456571053464 0 5.826505976411345 0 0 0 0 0 0 0.5 {M(Oxidation (M))|F}[Q{I|L}] 1.3638 - 9 + NaN NaN 99504.2 NaN 10020 2905 12923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12928 58.599 NaN 251690 35 0 26407 0.261 -1 YVQDYEDFM 9 80 613.239607440969 1224.464661948738 2 613.2393188476562 MULTI HCD FTMS 0 0 0 12923 70199.9609375 0.9136699564741609 -2 0.058994293212890625 5 Oxidation (M) _YVQDYEDFM(Oxidation (M))_ CTDSPL2-EIF3J|1|fusion;ENSG00000104131|ENST00000261868|EIF3J;nc|ENSG00000104131|O75822-2|EIF3J;nc|ENSG00000104131|O75822-3|EIF3J 36.506200033944 0.08138327636155518 1 D{I|L}QED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 39.487 0 0 3.2248 0 0 312.11384780097814 0 312.11384780097814 0 18.301076760918704 0 0 0 0.5 0 0.3252574989159953 0 D{I|L}QED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2248 - 178 NaN NaN 124323.4 NaN 10021 2905 12923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12929 58.603 NaN 169520 35 0 33650 0.261 + 24069 RYADDSFTPAF 11 56 645.2935407502184 1288.5725285672368 2 645.2951049804688 MULTI HCD FTMS 0 0 0 12923 41790.59765625 0.6616077814288484 -3 0.09500885009765625 6 Unmodified _RYADDSFTPAF_ ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A 19.361941925380144 0.2883811769592959 1 TPA{M(Oxidation (M))|F} 4 7 33.232 0 0 2.579 0 0 854.352342674025 0 854.352342674025 0 25.273109370204452 0 0 0 1.242992819099939 0 0.7614393726401688 0 + TPA{M(Oxidation (M))|F} 2.579 + + 24 NaN NaN 109113 NaN 10022 2905 12923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12931 58.608 NaN 6498900 35 0 1909100 0.327 + 31993 VYPLMKEYF 9 96 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 12930 4091402 0.9750024962472884 -4 0.11790084838867188 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 118.0683919894846 0.0016252157255221692 1 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 99.029 0 0 8.221 8.221 90.061 0 0 0 6.9675611333696565 6.9675611333696565 6.9675611333696565 6.9675611333696565 0 2.9802046884880937 2 1.1936726795685342 0 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]E{[HG]|PP}{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}{[HG]|PP}EP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]Y[DP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F} 8.221;7.6426;7.469;6.5144;6.2655;6.2337;6.1712;6.1178;6.0919;6.044 +;+;-;-;-;-;-;-;-;- + 5387 + NaN NaN 820050 NaN 10023 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12932 58.612 NaN 705860 35 0 110380 0.261 + 35865 YYQSSVQYL 9 86 575.7734655615773 1149.5323781899544 2 575.78466796875 MULTI HCD FTMS 0 0 0 12930 51515.8203125 0.26213138162670313 -4 0.11790084838867188 2 Unmodified _YYQSSVQYL_ ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 57.24910588100465 0.021429789259086996 1 [YG]S{M(Oxidation (M))|F}SSVQY{I|L} 10 3 + 66.437 0 0 5.7795 5.7795 84.952 0 0 0 4.771212547196626 16.53212513775344 4.771212547196626 4.771212547196626 0 1.829689690656103 0 0.75 0.3807196863200844 [YG]S{M(Oxidation (M))|F}SSVQY{I|L};YYQSSVQY{I|L};[YG]S{M(Oxidation (M))|F}SSV[AG]Y{I|L};YYQSSV[AG]Y{I|L};[QP][DN]SSVQY{I|L};YY[AG]SSVQY{I|L};[QP]G[DG]SSVQY{I|L};[QP][DN]SSV[AG]Y{I|L};[QP]G[DG]SSV[AG]Y{I|L};YY[AG]SSV[AG]Y{I|L} 5.7795;5.3644;4.651;4.5634;4.5634;4.5634;4.3053;3.7661;3.5112;3.4349 -;+;-;-;-;-;-;-;-;- + 834 NaN NaN 203606.1 NaN 10024 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12933 58.616 NaN 403460 35 0 44833 0.261 + 17959 MITDLEERL 9 84 560.2894545112632 1118.5643560893263 2 560.2891235351562 MULTI HCD FTMS 0 0 0 12930 121699.4296875 0.19340296101003063 5 -0.14108657836914062 3 Unmodified _MITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 65.47368725323818 0.010552856507075443 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}EER{I|L} 9 0 + 61.768 0 0 5.5221 5.5221 91.132 0 0 0 12.734324194751707 27.193189900427583 12.734324194751707 31.587289810700653 0 2.548455006504028 2 0.3252574989159953 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}EER{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[W{I|L}]E[DV]{I|L};[YV]GT[YV]VAT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]V[{M(Oxidation (M))|F}V]T[EP];{[ET]|[MV]}{[ET]|[MV]}{I|L}EER{I|L};[TA][C(Carbamidomethyl (C))K]{I|L}{[TV]|[{I|L}S]}T[EP];[{M(Oxidation (M))|F}T]AV[YV]{[HG]|PP}[EP];[{M(Oxidation (M))|F}T]AV[YV]VA{[{M(Oxidation (M))|F}C]|[YS]};[TA]{M(Oxidation (M))|F}V[YV]{[HG]|PP}[EP];[TA]{M(Oxidation (M))|F}V[YV]VA{[{M(Oxidation (M))|F}C]|[YS]} 5.5221;2.6981;2.4386;1.5121;1.2648;1.1352;0.48296;0.42361;0.30962;0.25027 +;-;-;-;-;-;-;-;-;- + 1055 NaN NaN 141186.3 NaN 10025 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12934 58.619 NaN 251940 35 0 29878 0.261 + 22695 QYAGKYVLF 9 60 544.7929117183387 1087.5712705034773 2 544.79248046875 MULTI HCD FTMS 0 0 0 12930 117845.625 0.7766235699958698 -1 0.022891998291015625 4 Unmodified _QYAGKYVLF_ ENSG00000211445|ENST00000388825|GPX3;ENST00000519214.5_1_5:150400805-150405029:+|nuORF 54.773552608820026 0.024892918755467567 1 [YQ]A[KA][{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F} 9 3 + 31.659 0 0 2.911 2.911 81.287 0 0 0 10.923232268738591 2.3725709897451033 2.3725709897451033 4.82657150864647 0 1.329689690656103 0 0 0 [YQ]A[KA][{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F};[YV][KQ][YQ]{I|L}{M(Oxidation (M))|F};[YV][KQ]{I|L}[YQ]{M(Oxidation (M))|F};[YV]{I|L}[KQ][YQ]{M(Oxidation (M))|F} 2.911;2.4672;1.8245;1.6902 -;-;-;- 216 + NaN NaN 114965.3 NaN 10026 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12935 58.622 NaN 279750 35 0 58258 0.261 + -1 HRQMKMEPF 9 63 610.2890701434106 1218.5635873536212 2 610.288330078125 MULTI HCD FTMS 0 0 0 12930 54256.04296875 0.5838110105555969 1 -0.029571533203125 5 Oxidation (M) _HRQM(Oxidation (M))KMEPF_ REV__ENSG00000180777|ENST00000690538|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B 10.823927491677226 0.26684000660059787 1 P{M(Oxidation (M))|F} 2 -1 22.206 0 0 1.8223 0 0 956.4316553844458 0 956.4316553844458 0 2.201140738196017 0 0 0 0.4247425010840047 0 0 0 P{M(Oxidation (M))|F} 1.8223 + + 10 NaN NaN 138318.1 NaN 10027 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12936 58.626 NaN 346170 35 0 92571 0.264 + 3579 EKHEEFRKLF 10 62 454.91193305436167 NaN 0 454.90325927734375 PEAK HCD FTMS 0 0 0 12930 16051.22265625 0.9069370054774487 -2 0.0457305908203125 6 Unmodified _EKHEEFRKLF_ ENSG00000180071|ENST00000399703|ANKRD18A 7.477065608646677 0.333784957163546 1 V 1 10 6.9897 0 0 0.76995 0 0 131.39053273495125 674.3263499967131 805.7168827316643 0 0 0 0 0 0 0 0 0 V 0.76995 - 11 + NaN NaN 130704 NaN 10028 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12937 58.629 NaN 187320 35 0 25234 0.261 + 35742 YYLQGGFNKF 10 61 618.8062233247811 1235.597893716362 2 619.2935180664062 MULTI HCD FTMS 0 0 0 12930 10014.8466796875 0.024007800987954714 -8 0.23279571533203125 7 Unmodified _YYLQGGFNKF_ ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000164086|Q16829-2|DUSP7 24.020572477871973 0.2864316864133941 1 YY{I|L}Q 4 6 38.544 0 0 3.1195 0 0 0 665.3025805662245 665.3025805662245 23.85151878060192 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + YY{I|L}Q 3.1195 + + 252 NaN NaN 113812.1 NaN 10029 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12938 58.632 NaN 214540 35 0 26881 0.262 + 1130 AYLDKISEL 9 63 526.2873998842421 1050.560246835284 2 526.2874755859375 MULTI HCD FTMS 0 0 0 12930 48249.41015625 0.7947489435764461 -1 0.022891998291015625 8 Unmodified _AYLDKISEL_ ENSG00000152193|ENST00000282003|OBI1 27.223235318498237 0.1251536255799991 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DK{I|L}SE{I|L} 9 0 + 50.785 0 0 4.8341 4.8341 88.31 0 0 0 5.42342188037523 39.35850004969453 5.42342188037523 15.433050281841211 0 1.0484550065040281 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DK{I|L}SE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KS]{NN|[MP]|[D{I|L}]|[EV]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KS]WRQ;{[QN]|[E{I|L}]|[KN]}[YG]K{I|L}SE{I|L} 4.8341;3.3651;2.9457;1.1455 +;-;-;- + 121 NaN NaN 119676.2 NaN 10030 2906 12930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12940 58.637 NaN 530030 35 0 103050 0.327 + 12644 KWFFQKLRF 9 80 433.91669708106457 1298.7282618433937 3 433.9167175292969 MULTI HCD FTMS 0 0 0 12939 243625.265625 0.32851549756264187 9 -0.25249481201171875 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 59.368380827593164 0.01846506874148156 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 77.111 0 0 5.9374 5.9374 85.193 0 0 0 15.351584312837048 12.218487496163561 12.218487496163561 4.771212547196626 0 1.5501648626366045 0 0 0.3807196863200844 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 5.9374;5.57;5.2284;4.9966;4.861;4.7554;4.6292;4.2876;4.0463;3.9202 +;-;-;-;-;-;-;-;-;- + 410 + NaN NaN 166015.4 NaN 10031 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12941 58.642 NaN 754740 35 0 83601 0.261 + 19369 NPDREGWLL 9 100 550.2810141412148 1098.5474753492294 2 550.280517578125 MULTI HCD FTMS 0 0 0 12939 268157.8125 1 0 0 2 Unmodified _NPDREGWLL_ ENSG00000008256|ENST00000350796|CYTH3;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000108669|ENST00000446868|CYTH1;ENST00000462927.5_1_22:37699411-37707619:+|nuORF;nc|ENSG00000008256|O43739|CYTH3;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000108669|Q15438-2|CYTH1;nc|ENSG00000108669|Q15438-3|CYTH1 49.52724829834842 0.03223213920720493 1 NEGW{I|L}{I|L} 6 3 57.969 0 0 5.2769 0 0 368.1808033673844 0 368.1808033673844 0 33.10394004268672 0 0 0 1.1549471895720984 0 0 1.1549471895720984 NEGW{I|L}{I|L} 5.2769 - 1964 NaN NaN 208086.5 NaN 10032 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12942 58.645 NaN 520740 35 0 56335 0.261 + 32094 VYRVYVATF 9 76 559.305849150347 1116.5971453674938 2 559.3060913085938 MULTI HCD FTMS 0 0 0 12939 210710.484375 0.8440497198960638 1 -0.0328826904296875 3 Unmodified _VYRVYVATF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 96.11092074494114 0.00436583732602279 1 [YV]RVYVAT{M(Oxidation (M))|F} 9 0 + 95.099 0 0 8.5168 8.5168 95.74 0 0 0 8.212112250009653 71.91122510072759 8.212112250009653 23.7898501052333 0 2.6237125054200234 1.3979400086720375 0.4247425010840047 0 + + [YV]RVYVAT{M(Oxidation (M))|F};[YV]RVYVGYV;[YV]RVY[TA]V{M(Oxidation (M))|F};[YV]GVVYRYV;[YV]GVVYV[YR];[{M(Oxidation (M))|F}T][R{I|L}]YVAT{M(Oxidation (M))|F};[YV]RV[TA]YV{M(Oxidation (M))|F};[YV]RV[TA]VY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AVVYRYV;[YV]RVY[TA]{M(Oxidation (M))|F}V 8.5168;6.3863;6.0094;6.0059;5.8312;5.6341;5.2017;4.9321;4.9132;4.7539 +;-;-;-;-;-;-;-;-;- + 1171 NaN NaN 152434.1 NaN 10033 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12943 58.649 NaN 517210 35 0 42540 0.261 + 6457 FPIHVQTSL 9 90 521.2901568083132 1040.5657606834263 2 521.2902221679688 MULTI HCD FTMS 0 0 0 12939 154688.5625 0.1773888087996859 5 -0.14112091064453125 4 Unmodified _FPIHVQTSL_ ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7 114.20165948288297 0.0022564706844261533 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L} 9 0 + 65.831 0 0 6.3264 6.3264 84.216 0 0 0 1.295249434296366 1.295249434296366 1.295249434296366 1.295249434296366 0 2.254432191740108 1.0969100130080565 0.8494850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L};{M(Oxidation (M))|F}P{I|L}HVQTS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HV[AG]TS{I|L};{M(Oxidation (M))|F}P{I|L}HV[AG]TS{I|L};[YR]QV[Y{I|L}]S{I|L};[YV]{[SA]|[TG]}[RV]{M(Oxidation (M))|F}S{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{I|L};[HV]{M(Oxidation (M))|F}[{I|L}P]QTS{I|L};{M(Oxidation (M))|F}[HV][{I|L}P]QTS{I|L};{[TV]|[{I|L}S]}GY[RV]{M(Oxidation (M))|F}S{I|L} 6.3264;6.202;5.4415;5.0396;3.4055;3.3213;3.118;3.0737;2.9865;2.885 +;+;-;-;-;-;-;-;-;- + 873 NaN NaN 171970.4 NaN 10034 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12944 58.652 NaN 695050 35 0 101260 0.261 + 29175 TYISWKEEL 9 79 584.7981221698785 1167.581691406557 2 584.7979125976562 MULTI HCD FTMS 0 0 0 12939 299521.5 0.7211877796339573 -3 0.0753021240234375 5 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 87.25819977447905 0.004597812622239197 1 [YT]{I|L}SWKEE{I|L} 9 0 + 90.411 0 0 7.7435 7.7435 95.942 0 0 0 21.64320017660792 68.04235956215813 21.64320017660792 52.27243781503062 0 2 2 0.8807196863200843 0 + + [YT]{I|L}SWKEE{I|L};{[TV]|[{I|L}S]}[YT]WKEE{I|L};[YN]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KEE{I|L};[YT]{I|L}S[{I|L}V]{[ET]|[MV]}{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]{I|L}[QP]T{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}KKW{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]};{[QN]|[E{I|L}]|[KN]}EKWS[YT]{I|L};{[QN]|[E{I|L}]|[KN]}[WH][QP]{I|L}[{M(Oxidation (M))|F}V];{[QN]|[E{I|L}]|[KN]}[YV]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L};{[QN]|[E{I|L}]|[KN]}EKWS{I|L}[YT] 7.7435;3.2665;3.1813;3.0327;2.8694;2.327;1.3835;1.147;1.0045;0.97487 +;-;-;-;-;-;-;-;-;- + 610 NaN NaN 198164.2 NaN 10035 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12945 58.655 NaN 321450 35 0 34870 0.264 + 21640 PYRLIFEKF 9 72 404.8973420405621 1211.6701967218862 3 404.89739990234375 MULTI HCD FTMS 0 0 0 12939 135198.671875 0.25737074851339925 5 -0.14112091064453125 6 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 46.4752305370441 0.03650170304629088 1 P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F} 10 6 + 51.107 0 0 4.2179 4.2179 86.863 0 0 0 11.962724883926654 13.076512587389637 11.962724883926654 13.076512587389637 0 1.1237125054200234 0 0 0.3494850021680094 P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F};[YR]P{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YR]{I|L}{I|L}P{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YR]{I|L}{I|L}{M(Oxidation (M))|F}PEK{M(Oxidation (M))|F};[YR]{I|L}{I|L}{M(Oxidation (M))|F}EPK{M(Oxidation (M))|F};[YR]P{I|L}{I|L}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[YR]{I|L}{I|L}{M(Oxidation (M))|F}EKP{M(Oxidation (M))|F};[YR]{I|L}{I|L}P{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[YR]{I|L}{I|L}{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E 4.2179;3.1387;2.6272;2.5251;2.2988;1.6754;1.4923;1.1639;1.0618 -;-;-;-;-;-;-;-;- 220 + NaN NaN 130316.8 NaN 10036 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12946 58.659 NaN 219110 35 0 22875 0.261 -1 0 64 516.3008311845526 515.2935547179526 1 516.2976684570312 MULTI HCD FTMS 0 0 0 12939 69020.03125 0.18983778994614142 9 -0.25249481201171875 7 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3 -1 6.5668 0 0 1.2744 0 0 0 167.1012994291432 167.1012994291432 0.8804562952784076 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 1.2744 - 15 NaN NaN 123048.4 NaN 10037 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12947 58.662 NaN 234870 35 0 23703 0.261 + 35334 YWMHVQNTF 9 62 613.2765410783633 1224.5385292235264 2 613.276611328125 MULTI HCD FTMS 0 0 0 12939 104487.4765625 1 0 0 8 Unmodified _YWMHVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 37.97399986684836 0.07464525285885698 1 KQNT{M(Oxidation (M))|F} 5 5 38.175 0 0 3.1175 0 0 588.2017079084 0 588.2017079084 0 18.50833760139686 0 0 0 0.5 0 0 0.4247425010840047 KQNT{M(Oxidation (M))|F} 3.1175 - 98 NaN NaN 111354.4 NaN 10038 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12948 58.665 NaN 180920 35 0 15471 0.261 -1 RLCLCVALL 9 72 530.8047529280781 NaN 0 530.79296875 PEAK HCD FTMS 0 0 0 12939 8547.2734375 0.5339477513288439 1 -0.0328826904296875 9 Carbamidomethyl (C) _RLCLC(Carbamidomethyl (C))VALL_ ENST00000479540.5_1_20:62201547-62202346:-|nuORF 7.910154910731844 0.25691533546754686 1 VV 2 -1 10.969 0 0 1.0352 0 0 696.4120743602592 162.02308069400627 858.4351550542655 0 0 0 0 0 0 0 0 0 VV 1.0352 - 33 + NaN NaN 112981.5 NaN 10039 2907 12939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12950 58.67 NaN 840770 35 0 113280 0.326 + 1486 AYTPFHAVL 9 77 509.7715634460214 1017.5285739588428 2 509.7715759277344 MULTI HCD FTMS 0 0 0 12949 500296.53125 0.22858772823092866 5 -0.1344451904296875 1 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 106.8454739257335 0.003457388669738163 1 {M(Oxidation (M))|F}PTC{I|L} 5 7 44.029 0 0 4.327 0 0 438.2594471662125 0 438.2594471662125 0 26.070006276765483 0 0 0 0.9247425010840047 0 1 0 {M(Oxidation (M))|F}PTC{I|L} 4.327 - 199 NaN NaN 219213.1 NaN 10040 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12951 58.675 NaN 573260 35 0 60978 0.261 + 35844 YYQNYFEKL 9 75 634.3036450504073 1266.5927371676146 2 634.3034057617188 MULTI HCD FTMS 0 0 0 12949 409530.625 0.20028741172821293 6 -0.16396331787109375 2 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 121.34585337138759 0.001129813327125052 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 110.23 0 0 8.703 8.703 92.555 0 0 0 4.190840781556204 4.190840781556204 4.190840781556204 9.208187539523749 0 3.079689690656103 2 0.6989700043360187 0.6861818737241735 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYN[AG]Y{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{I|L};[YQ]YNY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{I|L} 8.703;7.976;7.976;7.6632;7.2525;6.9362;6.9362;6.5304;6.1607;5.8214 +;-;-;-;-;-;-;-;-;- + 692 + NaN NaN 186391.3 NaN 10041 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12952 58.678 NaN 468610 35 0 52430 0.261 + 35423 YYEHEFVEL 9 76 614.7798322330458 1227.5451115328915 2 614.780029296875 MULTI HCD FTMS 0 0 0 12949 153271.203125 0.8930149003066947 -1 0.0328826904296875 3 Unmodified _YYEHEFVEL_ ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B 27.223235318498237 0.1251536255799991 1 E{M(Oxidation (M))|F}VE{I|L} 5 4 41.682 0 0 3.3956 0 0 592.2288685529312 0 592.2288685529312 0 21.44923961241264 0 0 0 0.8494850021680094 0 0 0 + E{M(Oxidation (M))|F}VE{I|L} 3.3956 + + 423 NaN NaN 157342.3 NaN 10042 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12953 58.682 NaN 1084800 35 0 120780 0.263 + 10267 IKDKRYEEYAF 11 91 487.9173265733983 1460.730150320395 3 488.2514953613281 MULTI HCD FTMS 0 0 0 12949 101266.6953125 0.5019861976554604 -2 0.0624542236328125 4 Unmodified _IKDKRYEEYAF_ REV__ENSG00000115761|ENST00000381685|NOL10;REV__nc|ENSG00000115761|Q9BSC4-2|NOL10;REV__nc|ENSG00000115761|Q9BSC4-4|NOL10 6.623454094837244 0.3898724468670146 1 {NN|[MP]|[D{I|L}]|[EV]}[YR]{M(Oxidation (M))|F}KVTEGS{M(Oxidation (M))|F} 12 -1 + 83.379 0 0 5.708 5.708 88.6 0 0 0 5.308476749516132 45.372578492261496 5.308476749516132 10.457574905606748 0 2.388210492164445 1.0457574905606752 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}[YR]{M(Oxidation (M))|F}KVTEGS{M(Oxidation (M))|F};[YQ][KQ]{M(Oxidation (M))|F}KVTEGS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}[HC]{I|L}VTWS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{M(Oxidation (M))|F}KVTEGS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DV]{M(Oxidation (M))|F}KVTEGS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}K[HC]{I|L}VTWS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[{M(Oxidation (M))|F}T]VA{I|L}VTEGS{M(Oxidation (M))|F};[YQ]ETVK{M(Oxidation (M))|F}[KQ]GS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GETVK{M(Oxidation (M))|F}[KQ]GS{M(Oxidation (M))|F};[HD]WTVK{M(Oxidation (M))|F}{[MG]|[TS]}{I|L}{NN|[MP]|[D{I|L}]|[EV]} 5.708;4.9921;4.98;4.8683;4.6622;4.3846;4.0083;3.8796;3.7558;3.7547 -;-;-;-;-;-;-;-;-;- 1776 NaN NaN 252690.2 NaN 10043 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12954 58.685 NaN 764060 35 0 122870 0.261 + 27444 SYVQVTSNF 9 87 522.7535900616798 1043.4926271901595 2 522.7540283203125 MULTI HCD FTMS 0 0 0 12949 184908.9375 0.628604476911896 -2 0.0624542236328125 5 Unmodified _SYVQVTSNF_ ENSG00000072364|ENST00000265343|AFF4 100.7086487251713 0.004245359191255521 1 {[{M(Oxidation (M))|F}C]|[YS]}VQVTSN{M(Oxidation (M))|F} 9 0 + 72.832 0 0 6.9797 6.9797 87.334 0 0 0 49.416061350170594 5.017098561325767 5.017098561325767 5.430351549531437 0 2.579689690656103 0 0.25 0.5941876774005248 + + {[{M(Oxidation (M))|F}C]|[YS]}VQVTSN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VQVTSGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V[AG]VTSN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VVQTSN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V[AG]VTSGG{M(Oxidation (M))|F};[NS][Y{I|L}]VTSN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VQV[NS]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VV[AG]TSN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V[AG]V[NS]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VQE[KS]G{M(Oxidation (M))|F} 6.9797;6.4593;6.0972;5.7378;5.581;5.0448;4.8853;4.5205;4.0029;2.5782 +;-;-;-;-;-;-;-;-;- + 1589 + NaN NaN 193300.3 NaN 10044 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12955 58.688 NaN 328090 35 0 47021 0.262 + 11043 IYFFHHYEL 9 61 423.5414636926595 1267.6025616781785 3 423.5415344238281 MULTI HCD FTMS 0 0 0 12949 97741.9609375 1 0 0 6 Unmodified _IYFFHHYEL_ ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF 20.41453444215458 0.18397929046831515 1 {I|L}Y{M(Oxidation (M))|F} 3 6 42.479 0 0 3.3512 0 0 0 841.3723238580686 841.3723238580686 23.499934467764874 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 + {I|L}Y{M(Oxidation (M))|F} 3.3512 + + 59 + NaN NaN 128727.1 NaN 10045 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12956 58.692 NaN 736360 35 0 87070 0.261 + 4668 EYPDRIMNTF 10 75 643.2977950714372 1284.5810372096744 2 643.2979125976562 MULTI HCD FTMS 0 0 0 12949 153028.046875 0.049157049872813385 -6 0.18035507202148438 7 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 117.83759599426817 4.151732338833739E-05 1 [YE][DP]R{I|L}MNT{M(Oxidation (M))|F} 10 0 + 61.338 0 0 4.775 4.775 91.024 0 0 0 39.884673299826105 22.459289064207923 22.459289064207923 61.33832349494695 0 2.128144697160131 1.6989700043360187 1.5189301784845295 0.6505149978319906 + + [YE][DP]R{I|L}MNT{M(Oxidation (M))|F} 4.775 + + 319 + NaN NaN 206144.2 NaN 10046 2908 12949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12958 58.696 NaN 1737800 35 0 289360 0.327 -1 0 114 582.3449039786885 1162.675255024177 2 582.3449096679688 MULTI HCD FTMS 0 0 0 12957 1210850.125 0.25047906689446325 5 -0.1376800537109375 1 NaN NaN 1 YAWV{I|L}DK{I|L} 8 -1 71.309 0 0 6.1332 0 0 156.12499609579237 0 156.12499609579237 0 34.510197829501074 0 0 0 2.9049471895720984 0 1.829689690656103 0.5649093276264391 YAWV{I|L}DK{I|L} 6.1332 - 2346 + NaN NaN 352813.9 NaN 10047 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12959 58.701 NaN 495580 35 0 67610 0.261 + 18842 NAELWQVSW 9 70 566.7748582236685 1131.535163514137 2 566.7750244140625 MULTI HCD FTMS 0 0 0 12957 245590.875 0.7771979189958236 3 -0.0819549560546875 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 1 P{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 8 6 55.897 0 0 4.9399 0 0 222.09926885185206 0 222.09926885185206 0 48.44965995239981 0 0 0 2.7059771852360797 0 0.4247425010840047 0 P{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 4.9399 - 726 + NaN NaN 156419.1 NaN 10048 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12960 58.704 NaN 431660 35 0 45536 0.261 + 1699 CGLLGFVLDLK 11 99 589.335310434525 1176.65606793585 2 589.3345336914062 MULTI HCD FTMS 0 0 0 12957 115082.71875 0.2323881429416836 6 -0.16391372680664062 3 Unmodified _CGLLGFVLDLK_ ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2 39.94969957227396 0.1372740116928318 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L} 9 6 + 50.349 0 0 4.279 4.279 82.051 0 0 0 11.773467196501372 30.370448632700384 11.773467196501372 3.881801713828807 0 1.5189301784845295 0 1.110924374808178 0.25 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}T[MT]{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[W{M(Oxidation (M))|F}]DK{I|L};[QP]{I|L}[MT]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}K{I|L} 4.279;3.9491;3.1695;0.54909 -;-;-;- 539 NaN NaN 156319.4 NaN 10049 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12961 58.708 NaN 531990 35 0 35950 0.261 + 8394 GYNVKFDMF 9 87 568.7575956587906 1135.500638384381 2 568.7579345703125 MULTI HCD FTMS 0 0 0 12957 137359.25 0.6403884497449771 5 -0.1376800537109375 4 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ ENSG00000167468|ENST00000354171|GPX4;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;ENST00000589115.5_1_19:1105440-1106426:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4 122.17920374332846 0.0010792739174387011 1 [YG]NVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 99.579 0 0 8.7696 8.7696 92.661 0 0 0 63.40288749933073 14.973024840566467 14.973024840566467 9.208187539523749 0 2.642159058960253 2 0.9604093769761874 0.3252574989159953 + + [YG]NVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GGVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]NV[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};[YG]N[YK][TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]N[HC]KV[C(Carbamidomethyl (C))R];[YG]GG[HC]KV[C(Carbamidomethyl (C))R];[YG][KG][C(Carbamidomethyl (C))H]V[C(Carbamidomethyl (C))R];[Y{I|L}][C(Carbamidomethyl (C))N][YE]K{M(Oxidation (M))|F};[YG][RK]G[HC]N{[DS]|[MA]|[CV]|TT};[RH][HM]{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.7696;7.9587;5.5228;5.5065;4.5242;3.7133;3.3133;3.1313;2.9113;2.4421 +;-;-;-;-;-;-;-;-;- + 947 + NaN NaN 165340.5 NaN 10050 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12962 58.711 NaN 1046200 35 0 92836 0.261 + 35866 YYQSSVQYL 9 94 575.7734655615773 1149.5323781899544 2 575.7725219726562 MULTI HCD FTMS 0 0 0 12957 175436.703125 0.8926862680090414 -1 0.02628326416015625 5 Unmodified _YYQSSVQYL_ ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 87.25819977447905 0.004597812622239197 1 [YG]S{M(Oxidation (M))|F}SSVQY{I|L} 10 3 + 76.736 0 0 6.6755 6.6755 84.616 0 0 0 0.6955384640125573 14.788107009300617 0.6955384640125573 0.6955384640125573 0 2.2614393726401687 0 1.6989700043360187 0 [YG]S{M(Oxidation (M))|F}SSVQY{I|L};YYQSSVQY{I|L};[YQ]YSSVQY{I|L};[YG]AYSSVQY{I|L};[YG]S{M(Oxidation (M))|F}SSV[AG]Y{I|L};[HS]{[ET]|[MV]}SSVQY{I|L};YY[AG]SSVQY{I|L};YYQSSV[AG]Y{I|L};[YQ]YSSV[AG]Y{I|L};[YT][YN]SVQY{I|L} 6.6755;6.6149;6.569;6.1846;5.8782;5.8483;5.8139;5.8139;5.7679;5.5608 -;+;-;-;-;-;-;-;-;- + 1564 NaN NaN 261418.8 NaN 10051 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12963 58.714 NaN 373090 35 0 77094 0.261 + 5707 FPAGYMYPSM 10 71 598.2437474687239 1194.4729420042477 2 598.2442016601562 MULTI HCD FTMS 0 0 0 12957 82918.0390625 0.45002109438965554 11 -0.2974815368652344 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 64.23631603340823 0.02601519761747251 1 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 54.452 0 0 4.5586 0 0 64.00242138638698 0 64.00242138638698 0 39.675434944016494 0 0 0 1.4247425010840047 0 1.3829131673969606 0 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4.5586 - 447 + NaN NaN 159570.9 NaN 10052 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12964 58.718 NaN 336460 35 0 52339 0.262 + 17690 MANVELSSL 9 58 490.2419811891857 978.4694094451714 2 490.2419738769531 MULTI HCD FTMS 0 0 0 12957 87712.703125 0.6390214488778333 -1 0.02628326416015625 7 Oxidation (M) _M(Oxidation (M))ANVELSSL_ ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E 57.72198328787511 0.020768266150574023 1 {[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L} 9 3 + 54.063 0 0 5.5253 5.5253 83.623 0 0 0 3.0102999566398125 14.973024840566467 3.0102999566398125 3.0102999566398125 0 1.4247425010840047 0 0.5 0.8494850021680094 {[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L};{[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}E{I|L}SS{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[DG]E{I|L}SS{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[NV]|[RG]}[NS]{[WT]|[RM]} 5.5253;5.2177;5.1492;0.48258 -;-;-;- 84 NaN NaN 122858.1 NaN 10053 2909 12957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12966 58.723 NaN 847890 35 0 104090 0.327 + 4623 EYMEHVYLI 9 79 606.7838077584753 1211.5530625837505 2 606.7841186523438 MULTI HCD FTMS 0 0 0 12965 341655.0625 0.4728782838295134 6 -0.16710281372070312 1 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 85.35673624503755 0.00464763827098139 1 Y[HM]{M(Oxidation (M))|F}EE{I|L} 7 5 44.028 0 0 3.634 0 0 244.17860610175939 0 244.17860610175939 0 24.106829096975275 0 0 0 0.805462187404089 0 0.4247425010840047 0 Y[HM]{M(Oxidation (M))|F}EE{I|L} 3.634 - 498 NaN NaN 232427.9 NaN 10054 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12967 58.727 NaN 458090 35 0 53255 0.261 + 19853 NYAWVYYHM 9 62 631.7688949312696 1261.5232369293392 2 631.7688598632812 MULTI HCD FTMS 0 0 0 12965 287751.9375 1 0 0 2 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 93.88341677533236 0.004424206486747196 1 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 70.881 0 0 5.6187 5.6187 88.643 0 0 0 48.05217133837289 7.504311474114331 7.504311474114331 11.293709283484077 0 2.1549471895720984 1.6989700043360187 0 0 [YN]AWYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[MG]|[TS]}VYWS{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]A{[ES]|[DT]|[{I|L}C]}YWS{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]WT{[QS]|[NT]}[WM]{M(Oxidation (M))|F};{[WN]|[YH]}YTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWY[WE][KC];[YN]{[MG]|[TS]}[WK]Y[WD];[WY]NAYVYH{M(Oxidation (M))|F};[HT]YYYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.6187;4.7234;4.5476;4.0127;2.9985;2.7801;2.5253;2.3857;2.1056;2.0748 -;-;-;-;-;-;-;-;-;- 1446 + NaN NaN 157146.2 NaN 10055 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12968 58.731 NaN 532200 35 0 45696 0.261 + 35743 YYLQGGFNKF 10 87 618.8062233247811 1235.597893716362 2 618.80615234375 MULTI HCD FTMS 0 0 0 12965 285882.0625 0.5089657657208564 -4 0.11496353149414062 3 Unmodified _YYLQGGFNKF_ ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000164086|Q16829-2|DUSP7 139.13845188893973 1.4742728145756104E-06 1 YY{I|L}QN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F} 9 2 + 100.68 0 0 8.1486 8.1486 88.768 0 0 0 12.245462655597095 12.245462655597095 12.245462655597095 4.259687322722812 0 2.555462187404089 2 0 1.1307196863200843 YY{I|L}QN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QN{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};[Y{I|L}]YQN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};[Y{I|L}]YQGG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F} 8.1486;7.8039;7.4034;7.4034;7.0622;6.7989;6.6617;5.752;5.7392;5.3944 -;+;-;-;-;-;-;-;-;- + 2547 NaN NaN 161807 NaN 10056 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12969 58.734 NaN 840370 35 0 66102 0.261 + 35867 YYQSSVQYL 9 97 575.7734655615773 1149.5323781899544 2 575.7745971679688 MULTI HCD FTMS 0 0 0 12965 196526.71875 1 0 0 4 Unmodified _YYQSSVQYL_ ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 87.25819977447905 0.004597812622239197 1 [YG]S{M(Oxidation (M))|F}SSVQY{I|L} 10 3 + 76.391 0 0 6.6454 6.6454 84.244 0 0 0 0.11008225228735569 14.78810700930061 0.11008225228735569 0.11008225228735569 0 2.2614393726401687 0 1.314909327626439 0.3494850021680094 [YG]S{M(Oxidation (M))|F}SSVQY{I|L};YYQSSVQY{I|L};[YQ]YSSVQY{I|L};[YG]AYSSVQY{I|L};YY[AG]SSVQY{I|L};YYQSSV[AG]Y{I|L};[QP][DN]SSVQY{I|L};[YQ]YSSV[AG]Y{I|L};[YG]S{M(Oxidation (M))|F}SSV[AG]Y{I|L};[YT][YN]SVQY{I|L} 6.6454;6.6358;6.3574;6.1905;5.8348;5.8348;5.5962;5.5564;5.5441;5.4735 -;+;-;-;-;-;-;-;-;- + 1436 NaN NaN 213520 NaN 10057 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12970 58.737 NaN 329350 35 0 74864 0.261 -1 CTEMCVEI 8 70 513.7013102175746 1025.388067501949 2 513.7012939453125 MULTI HCD FTMS 0 0 0 12965 119848.140625 0.9031705896039571 -2 0.052509307861328125 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))TEMCVEI_ CNOT1|p.R1912C|1|0.2|ENSG00000125107|chr16:58534308-58534308|G/A|missense_variant;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 13.50788311687929 0.4944073034352369 1 [{M(Oxidation (M))|F}V]{I|L} 3 -1 31.427 0 0 3.0649 0 0 0 663.1608370416624 663.1608370416624 15.228787452803374 0 0 0 0 1 1.3979400086720375 0 0 [{M(Oxidation (M))|F}V]{I|L} 3.0649 - 28 + NaN NaN 152957.4 NaN 10058 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12971 58.741 NaN 215910 35 0 19121 0.261 -1 0 67 497.2352813666002 496.2280049000002 1 498.2366027832031 MULTI HCD FTMS 0 0 0 12965 99368.0546875 0.22746419781611954 -9 0.26247406005859375 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 2.8171 0 0 331.14891662050644 0 331.14891662050644 0 0.1671187774347498 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.8171 - 19 + NaN NaN 130895.1 NaN 10059 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12972 58.744 NaN 282210 35 0 57454 0.261 + 7020 FPYPYAERL 9 65 578.2955224038284 1154.5764918744567 2 578.2957153320312 MULTI HCD FTMS 0 0 0 12965 111945.7890625 0.8855610774047787 -4 0.11496353149414062 7 Unmodified _FPYPYAERL_ ENSG00000105464|ENST00000263269|GRIN2D 40.23920728925047 0.06424668180817725 1 {I|L}MYPYAE 7 4 63.026 0 0 5.4588 0 0 0 284.1725252740844 284.1725252740844 43.562376115103945 0 0 0 0 1.3252574989159953 1.3979400086720375 0 0 {I|L}MYPYAE 5.4588 - 116 + NaN NaN 132804 NaN 10060 2910 12965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12974 58.749 NaN 5366000 35 0 1610500 0.327 + 31994 VYPLMKEYF 9 94 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 12973 3532987.25 0.8419293405927462 1 -0.029605865478515625 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 106.94017166704063 0.003441928997083001 1 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 99.3 0 0 8.2435 8.2435 89.151 0 0 0 4.726216766418972 4.726216766418972 4.726216766418972 4.726216766418972 0 3.048455006504028 2 1.2396518287104437 0 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYEVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 8.2435;7.8511;7.6273;6.5169;6.1979;6.1354;6.0919;5.8753;5.8453;5.8133 +;+;-;-;-;-;-;-;-;- + 3632 + NaN NaN 695588.1 NaN 10061 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12975 58.753 NaN 445910 35 0 138310 0.264 + 15411 LPDITHLRTGL 11 57 412.57501556412717 1234.7032172925815 3 412.5750427246094 MULTI HCD FTMS 0 0 0 12973 159067.078125 0.7349345638296121 1 -0.029605865478515625 2 Unmodified _LPDITHLRTGL_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 34.79049567835207 0.17050090841434293 1 {I|L}PD[{I|L}T]H{I|L} 7 4 58.02 0 0 4.6991 0 0 0 442.2425631158813 442.2425631158813 58.02001655294582 0 0 0 0 0.805462187404089 1.5228787452803376 0 0 + {I|L}PD[{I|L}T]H{I|L} 4.6991 + + 33 + NaN NaN 143809.6 NaN 10062 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12976 58.757 NaN 214510 35 0 45904 0.261 + 31288 VWFPGGAF 8 47 440.7212878422356 879.4280227512712 2 440.7210693359375 MULTI HCD FTMS 0 0 0 12973 94409.40625 0.08107564488541155 13 -0.3626708984375 3 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.5120171699125776 1 WV 2 7 45.093 0 0 5.1276 0 0 0 591.2577130512374 591.2577130512374 31.99453629280319 0 0 0 0 0.7134679910804405 2 0 0 WV 5.1276 - 31 + NaN NaN 113816.8 NaN 10063 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12977 58.76 NaN 508880 35 0 35051 0.261 + 17063 LYKPGAKKKI 10 86 573.3739450450257 1144.7333371568513 2 573.3739624023438 MULTI HCD FTMS 0 0 0 12973 36416.62890625 0.27888554993030745 -8 0.22297286987304688 4 Unmodified _LYKPGAKKKI_ ENSG00000183035|ENST00000329312|CYLC1 24.020572477871973 0.2864316864133941 1 [Y{I|L}][R{I|L}]VQ{I|L}K{I|L} 9 6 + 48.865 0 0 4.2687 4.2687 85.085 0 0 0 10.945531853034254 27.46539467890493 10.945531853034254 9.208187539523749 0 1.0994850021680094 1.5228787452803376 0 0 [Y{I|L}][R{I|L}]VQ{I|L}K{I|L};[Y{I|L}][R{I|L}]V[AG]{I|L}K{I|L};[Y{I|L}][R{I|L}]VQK{I|L}{I|L};[Y{I|L}][R{I|L}]V[AG]K{I|L}{I|L};[Y{I|L}][R{I|L}]RRR{I|L} 4.2687;3.4643;3.0898;2.2854;0.97165 -;-;-;-;- 523 NaN NaN 174723.7 NaN 10064 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12978 58.763 NaN 238980 35 0 22395 0.262 + 6395 FPHGGGFVL 9 54 465.745196963652 929.475840994104 2 465.7453308105469 MULTI HCD FTMS 0 0 0 12973 59946.2890625 0.41234658302288274 8 -0.21909713745117188 5 Unmodified _FPHGGGFVL_ ENSG00000156345|ENST00000325303|CDK20;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;ENST00000604175.5_1_9:90586022-90589430:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20 9.347437153973935 0.2795965555214564 1 QV{I|L} 3 7 30.005 0 0 3.2282 0 0 571.2671535369792 0 571.2671535369792 0 13.015384402724592 0 0 0 0.3807196863200844 0 0 0 QV{I|L} 3.2282 - 81 NaN NaN 112744.9 NaN 10065 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12979 58.767 NaN 172910 35 0 8879.7 0.261 + 2688 DVHGPDWNL 9 66 526.7438885258473 1051.4732241184945 2 526.7434692382812 MULTI HCD FTMS 0 0 0 12973 31340.048828125 0.12282289687947073 13 -0.3626708984375 6 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 18.1463463914782 0.20357593197100715 1 WN{I|L} 3 6 25.111 0 0 2.3882 0 0 620.2537708966812 0 620.2537708966812 0 10.506733072450825 0 0 0 0.3807196863200844 0 0 0.28872548999643577 + WN{I|L} 2.3882 + + 40 NaN NaN 108293.6 NaN 10066 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12980 58.77 NaN 206610 35 0 11044 0.261 + 32670 WPDDLQNHTF 10 62 636.7863603858957 1271.5581678385913 2 637.28857421875 MULTI HCD FTMS 0 0 0 12973 45595.5 0.6008170015214417 -4 0.11151504516601562 7 Unmodified _WPDDLQNHTF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000475627.1_1_6:32918275-32920806:-|nuORF;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 46.0223103267499 0.09314584965737738 1 WPDD{I|L}Q 6 4 50.621 0 0 3.981 0 0 0 514.2061251275999 514.2061251275999 27.433662338707528 0 0 0 0 0.7396518287104438 0 0.3807196863200844 0.7302046884880937 + WPDD{I|L}Q 3.981 + + 133 + NaN NaN 120254 NaN 10067 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12981 58.773 NaN 134200 35 0 7885.1 0.261 + -1 EPIELSFCD 9 60 555.2463202095239 1108.4780874858477 2 555.2460327148438 MULTI HCD FTMS 0 0 0 12973 43540.58984375 0.8180315091806982 3 -0.08533096313476562 8 Carbamidomethyl (C) _EPIELSFC(Carbamidomethyl (C))D_ REV__ENST00000264832.7_1_19:10381526-10381682:+|nuORF 10.823927491677226 0.26684000660059787 1 S{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 5 -1 26.823 0 0 2.4198 0 0 440.13972186260395 0 440.13972186260395 0 21.338031200885155 0 0 0 0.5 0 0.2614393726401688 0 S{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 2.4198 - 41 + NaN NaN 98262.2 NaN 10068 2911 12973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12983 58.778 NaN 949090 35 0 142270 0.327 + 21840 QAVEGEIDL 9 69 487.24589152793146 972.477230122663 2 487.24554443359375 MULTI HCD FTMS 0 0 0 12982 320461.9375 0.6995664301392859 -2 0.055728912353515625 1 Unmodified _QAVEGEIDL_ ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF 57.72198328787511 0.020768266150574023 1 [{I|L}A]NE{[DA]|[EG]}{I|L}D{I|L} 9 2 + 65.415 0 0 6.7266 6.7266 88.267 0 0 0 8.794482255454525 16.478174818886373 8.794482255454525 8.794482255454525 0 1.805462187404089 1.3979400086720375 0.9489700043360187 0 [{I|L}A]NE{[DA]|[EG]}{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}[QA]{[DA]|[EG]}{I|L}D{I|L};[{I|L}A]GGE{[DA]|[EG]}{I|L}D{I|L};{[DS]|[MA]|[CV]|TT}[KP]{[DA]|[EG]}{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[CT]|[{M(Oxidation (M))|F}G]}Y[{M(Oxidation (M))|F}V];[{M(Oxidation (M))|F}V][W{I|L}]YV{M(Oxidation (M))|F};[{I|L}A]NE{[NV]|[RG]}[WQ];[{I|L}A]N{[NV]|[RG]}E[WQ];{NN|[MP]|[D{I|L}]|[EV]}[QA]{[NV]|[RG]}[WQ] 6.7266;5.8223;5.7797;2.6186;2.3723;2.2233;2.028;1.6376;1.1176;0.73322 -;-;-;-;-;-;-;-;-;- 329 NaN NaN 224381.9 NaN 10069 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12984 58.783 NaN 1810400 35 0 203050 0.261 + 4624 EYMEHVYLI 9 104 606.7838077584753 1211.5530625837505 2 606.7981567382812 MULTI HCD FTMS 0 0 0 12982 284380.1875 0.3936052170165494 8 -0.21552658081054688 2 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 50.855029805455786 0.030374663808198754 1 {I|L}NE{M(Oxidation (M))|F}EE{I|L} 7 7 62.3 0 0 5.1421 0 0 319.16411025215 0 319.16411025215 0 23.406675951032753 0 0 0 0 0 0.6421590589602533 1.079689690656103 {I|L}NE{M(Oxidation (M))|F}EE{I|L} 5.1421 - 3280 NaN NaN 356582.4 NaN 10070 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12985 58.786 NaN 695500 35 0 71909 0.262 + 18770 NAANIFERL 9 79 524.2827074858326 1046.550862038465 2 524.2826538085938 MULTI HCD FTMS 0 0 0 12982 262175.90625 0.8173524287254701 -2 0.055728912353515625 3 Unmodified _NAANIFERL_ ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 125.0377797344192 0.0009059125702818869 1 {[QG]|[NA]}AN{I|L}{M(Oxidation (M))|F}ER{I|L} 9 0 + 118.85 0 0 11.357 11.357 94.299 0 0 0 20.726052125589973 16.478174818886373 16.478174818886373 9.208187539523749 0 2.8494850021680094 1.6989700043360187 0 2.653598431600422 + + {[QG]|[NA]}AN{I|L}{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}AGG{I|L}{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}A{I|L}N{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}A{I|L}GG{M(Oxidation (M))|F}ER{I|L};QQN{I|L}{M(Oxidation (M))|F}ER{I|L};QQGG{I|L}{M(Oxidation (M))|F}ER{I|L};QQ{I|L}N{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}AN{I|L}PP[HT]{I|L};QQ{I|L}GG{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}AN{I|L}{M(Oxidation (M))|F}{[NV]|[RG]}[KG] 11.357;10.477;10.469;9.589;9.3763;8.4912;8.4884;7.8028;7.6034;7.5517 +;-;-;-;-;-;-;-;-;- + 1311 NaN NaN 205262 NaN 10071 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12986 58.79 NaN 300510 35 0 65764 0.261 + -1 HRQMKMEPF 9 71 610.2890701434106 1218.5635873536212 2 610.2890014648438 MULTI HCD FTMS 0 0 0 12982 90681.84375 0.9757633609444176 7 -0.18949127197265625 4 Oxidation (M) _HRQM(Oxidation (M))KMEPF_ REV__ENSG00000180777|ENST00000690538|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B 10.823927491677226 0.26684000660059787 1 [{M(Oxidation (M))|F}E]{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{M(Oxidation (M))|F} 9 -1 + 27.984 0 0 2.2964 2.2964 84.626 0 0 0 3.5196669395074167 20.024816917827323 3.5196669395074167 10 0 0.7134679910804405 0 0.4247425010840047 0 [{M(Oxidation (M))|F}E]{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[DA]|[EG]}MVVVY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[YV] 2.2964;1.4758;0.41923 -;-;- 32 NaN NaN 135314.6 NaN 10072 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12987 58.793 NaN 435330 35 0 34789 0.261 + 8774 HIDTILHVL 9 82 530.8111108748661 1059.6076688165322 2 530.7930908203125 MULTI HCD FTMS 0 0 0 12982 41755.55078125 0.251303817899669 -6 0.17069244384765625 5 Unmodified _HIDTILHVL_ ENSG00000213983|ENST00000397120|AP1G2;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556741.5_1_14:24032738-24033292:-|nuORF 34.10243960390752 0.09241788333544565 1 H{I|L}{M(Oxidation (M))|F}[VS]{I|L}VV 8 5 31.987 0 0 3.0188 0 0 0 162.02317224674064 162.02317224674064 11.147807356021502 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 H{I|L}{M(Oxidation (M))|F}[VS]{I|L}VV 3.0188 - 269 + NaN NaN 149936.9 NaN 10073 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12988 58.796 NaN 245580 35 0 24237 0.261 + 7651 FYISPVNKL 9 69 540.8085624168976 1079.6025719005952 2 540.8090209960938 MULTI HCD FTMS 0 0 0 12982 16768.251953125 0.10052186607545714 9 -0.25154876708984375 6 Unmodified _FYISPVNKL_ AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;ENSG00000105778|ENST00000318709|AVL9;nc|ENSG00000105778|Q8NBF6-2|AVL9 19.256988751693697 0.19398022840297344 1 S{I|L}[YE] 4 8 27.58 0 0 2.5546 0 0 569.3546009748062 0 569.3546009748062 0 12.225417165319763 0 0 0 1.2887254899964358 0 0 0 S{I|L}[YE] 2.5546 - 141 NaN NaN 124544.4 NaN 10074 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12989 58.8 NaN 146470 35 0 31304 0.262 + 33035 YCKRDYVRLF 10 53 454.9033237132087 1361.688141739826 3 454.9031066894531 MULTI HCD FTMS 0 0 0 12982 29277.45703125 0.3269996858720976 3 -0.08195877075195312 7 Unmodified _YCKRDYVRLF_ ENSG00000159556|ENST00000290759|ISL2 3.072263186857199 0.4590417271953214 1 {I|L}{M(Oxidation (M))|F} 2 8 25.969 0 0 1.9071 0 0 1083.5241454625698 0 1083.5241454625698 0 23.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.9071 + + 11 NaN NaN 99151.1 NaN 10075 2912 12982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12991 58.805 NaN 556860 35 0 50516 0.327 + 1487 AYTPFHAVL 9 85 509.7715634460214 1017.5285739588428 2 509.7716369628906 MULTI HCD FTMS 0 0 0 12990 219849.875 0.10045039359465605 10 -0.27410888671875 1 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 46.92087301778293 0.0358782797343276 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4 5 46.682 0 0 4.5878 0 0 0 582.3033541315061 582.3033541315061 31.989700043360187 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4.5878 + + 405 + NaN NaN 164671.3 NaN 10076 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12992 58.809 NaN 363430 35 0 51858 0.261 + 29176 TYISWKEEL 9 70 584.7981221698785 1167.581691406557 2 584.7981567382812 MULTI HCD FTMS 0 0 0 12990 210792.34375 0.5075457433035704 3 -0.08516693115234375 2 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 67.83816525789305 0.009787749748478139 1 [YT]{I|L}SW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L} 9 0 + 81.348 0 0 6.9672 6.9672 95.202 0 0 0 12.580240701170169 69.9215250573674 12.580240701170169 81.34820009305471 0 2 2 0.8494850021680094 0 + + [YT]{I|L}SW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L} 6.9672 + + 162 NaN NaN 135131.2 NaN 10077 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12993 58.813 NaN 777970 35 0 85158 0.261 + 17022 LYIVHPTMF 9 103 568.7942611623242 1135.5739693914484 2 568.7940673828125 MULTI HCD FTMS 0 0 0 12990 234540.796875 0.6822859859162996 -1 0.02620697021484375 3 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 131.29775728308752 0.0005262696486345744 1 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 105.71 0 0 9.3087 9.3087 97.108 0 0 0 61.6042392839785 14.973024840566467 14.973024840566467 28.84137973906624 0 2.6747425010840047 1.6989700043360187 1.3076556684809653 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y{I|L}VH{[{M(Oxidation (M))|F}C]|[YS]}{[QN]|[E{I|L}]|[KN]};{I|L}Y{I|L}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PSW;{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}[WQ]VVPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}H{I|L}{I|L}P{M(Oxidation (M))|F};{I|L}[KA]D[W{M(Oxidation (M))|F}]{I|L}P{M(Oxidation (M))|F};RRDVV{[{M(Oxidation (M))|F}C]|[YS]}{[QN]|[E{I|L}]|[KN]};{I|L}{M(Oxidation (M))|F}{[RE]|[WV]}{[QS]|[NT]}{I|L}P{M(Oxidation (M))|F};RRE[{I|L}A]{[{M(Oxidation (M))|F}C]|[YS]}{[QN]|[E{I|L}]|[KN]} 9.3087;6.7689;5.4409;4.6354;2.7996;2.7858;0.81721;0.34514;0.32031;0.021094 +;-;-;-;-;-;-;-;-;- + 2300 + NaN NaN 204181.9 NaN 10078 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12994 58.816 NaN 371370 35 0 33829 0.261 + -1 VMNAMYILL 9 80 550.2810141412148 1098.5474753492294 2 550.2805786132812 MULTI HCD FTMS 0 0 0 12990 105832.1796875 0.39466379405783675 6 -0.1632843017578125 4 2 Oxidation (M) _VM(Oxidation (M))NAM(Oxidation (M))YILL_ REV__ENSG00000172464|ENST00000544374|OR5AP2;REV__OR5AP2|p.T116Lfs*8|1|0.14|ENSG00000172464|chr11:56642095-56642095|C/-|frameshift_variant 30.224811164608877 0.11021837014094292 1 {I|L}{I|L} 2 -1 25.217 0 0 2.2954 0 0 854.3666857033867 0 854.3666857033867 0 5.511525224473811 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.2954 + + 144 NaN NaN 153851 NaN 10079 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12995 58.819 NaN 236000 35 0 22679 0.264 + 21641 PYRLIFEKF 9 62 404.8973420405621 1211.6701967218862 3 404.8972473144531 MULTI HCD FTMS 0 0 0 12990 53782.1953125 0.10238239527286006 11 -0.3068580627441406 5 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 44.391923383255 0.04518338856193886 1 P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F} 10 6 + 46.348 0 0 3.8251 3.8251 87.719 0 0 0 29.358500049694527 9.035984316004217 9.035984316004217 20.996075289514092 0 0.6989700043360187 0 0.3494850021680094 0 P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F};[YR][{I|L}P]{I|L}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E 3.8251;2.0923 -;- 104 + NaN NaN 126018.3 NaN 10080 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12996 58.823 NaN 279550 35 0 42031 0.261 + 9949 IDTNGSEEF 9 60 506.2188867845264 NaN 0 506.23370361328125 PEAK HCD FTMS 0 0 0 12990 24985.626953125 0.8668601509272099 -3 0.08193588256835938 6 Unmodified _IDTNGSEEF_ REV__ENSG00000112972|ENST00000325110|HMGCS1;REV__ENST00000507004.1_1_5:43298575-43313480:-|nuORF;REV__ENST00000507293.1_1_5:43298575-43313499:-|nuORF 6.723162845929126 0.26266733336404485 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.69176 0 0 243.05818264932776 617.3032320611936 860.3614147105213 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.69176 + + 10 + NaN NaN 130260.3 NaN 10081 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12997 58.826 NaN 358340 35 0 36543 0.261 -1 IPDEQIVVM 9 76 530.2731571092106 1058.5317612852211 2 530.2738647460938 MULTI HCD FTMS 0 0 0 12990 81680.1640625 0.4960491375675012 -11 0.3148002624511719 7 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 22.736283301280096 0.1639198954644489 1 {I|L}VV{M(Oxidation (M))|F} 4 -1 48.175 0 0 4.5511 0 0 582.2687245099625 0 582.2687245099625 0 31.18562527100117 0 0 0 1.774227503252014 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.5511 + + 379 NaN NaN 140194.7 NaN 10082 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 12998 58.829 NaN 196310 35 0 91727 0.261 -1 MAYGVEPAL 9 38 483.733810906642 965.4530688800841 2 483.7340393066406 MULTI HCD FTMS 0 0 0 12990 22267.8515625 0.3592621342360289 7 -0.18931961059570312 8 Oxidation (M) _M(Oxidation (M))AYGVEPAL_ ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A 11.640296217721598 0.25978676193971967 1 E[PA]{I|L} 4 -1 21.427 0 0 2.2193 0 0 537.2261830060562 0 537.2261830060562 0 3.4678748622465605 0 0 0 1 0 0 0 E[PA]{I|L} 2.2193 + + 8 NaN NaN 119476 NaN 10083 2913 12990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13000 58.834 NaN 3963500 35 0 442650 0.327 + 4669 EYPDRIMNTF 10 108 643.2977950714372 1284.5810372096744 2 643.2979125976562 MULTI HCD FTMS 0 0 0 12999 3113043.75 1 0 0 1 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 202.96982384587182 2.8057383042876135E-23 1 EYPDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 105.02 0 0 8.1757 8.1757 93.968 0 0 0 14.814309196763702 14.814309196763702 14.814309196763702 14.814309196763702 0 2.584121882396211 1.6989700043360187 2.094187677400525 1.3169015600442577 + + EYPDR{I|L}MNT{M(Oxidation (M))|F};[YE]PDR{I|L}MNT{M(Oxidation (M))|F};EYPDR{I|L}MGGT{M(Oxidation (M))|F};[YE]PDR{I|L}MGGT{M(Oxidation (M))|F};[YE]PDR{I|L}MA[SG]{M(Oxidation (M))|F};[YE]PDR{I|L}MA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G;[DP][YE]R{I|L}MNT{M(Oxidation (M))|F};[YE]PDR{I|L}{[QS]|[NT]}M{M(Oxidation (M))|F};[DP]R[YE]{I|L}MNT{M(Oxidation (M))|F};[DP][YE]R{I|L}MGGT{M(Oxidation (M))|F} 8.1757;7.0225;6.9127;6.3091;5.7451;4.9845;4.6524;4.2602;4.1134;3.939 +;+;-;-;-;-;-;-;-;- + 4021 + NaN NaN 699002.1 NaN 10084 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13001 58.838 NaN 798050 35 0 126460 0.261 -1 0 87 582.3449039786885 1162.675255024177 2 582.3448486328125 MULTI HCD FTMS 0 0 0 12999 714372.3125 0.1477765964224845 10 -0.2773399353027344 2 NaN NaN 1 AWV{I|L}DK{I|L} 7 -1 67.031 0 0 5.7653 0 0 319.19047743965 0 319.19047743965 0 38.33690734984778 0 0 0 2.1549471895720984 0 0.3807196863200844 0.3494850021680094 AWV{I|L}DK{I|L} 5.7653 - 1529 NaN NaN 197438 NaN 10085 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13002 58.842 NaN 365550 35 0 34020 0.261 + 35845 YYQNYFEKL 9 70 634.3036450504073 1266.5927371676146 2 634.3036499023438 MULTI HCD FTMS 0 0 0 12999 320176.71875 0.1565874744875783 12 -0.3194236755371094 3 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 100.7086487251713 0.004245359191255521 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 100.77 0 0 7.9558 7.9558 91.349 0 0 0 6.187718690714377 6.187718690714377 6.187718690714377 9.208187539523749 0 2.885151878060192 2 0.6505149978319906 0.3807196863200844 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};[{M(Oxidation (M))|F}E][WP]GD{M(Oxidation (M))|F}EK{I|L} 7.9558;7.2288;7.2288;6.5053;3.1074 +;-;-;-;- + 527 + NaN NaN 144838.8 NaN 10086 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13003 58.845 NaN 543330 35 0 96794 0.264 + 12645 KWFFQKLRF 9 82 433.91669708106457 1298.7282618433937 3 433.9167785644531 MULTI HCD FTMS 0 0 0 12999 247668.3125 0.3339673276608146 16 -0.42803955078125 4 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 45.739877483867886 0.03899552410870734 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 80.276 0 0 6.1811 6.1811 84.722 0 0 0 13.590671722280234 4.771212547196626 4.771212547196626 3.0102999566398125 0 1.2134679910804405 0 0 0.3807196863200844 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}R{I|L};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}R{I|L};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}R{I|L};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}R{I|L};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}R{I|L} 6.1811;5.9493;5.8137;5.5819;5.4721;5.2403;5.1347;5.1047;4.8729;4.7673 +;-;-;-;-;-;-;-;-;- + 504 + NaN NaN 165121.6 NaN 10087 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13004 58.849 NaN 149920 35 0 13313 0.261 + 32095 VYRVYVATF 9 52 559.305849150347 1116.5971453674938 2 559.3055419921875 MULTI HCD FTMS 0 0 0 12999 64915.1171875 0.2600325590900229 8 -0.21522903442382812 5 Unmodified _VYRVYVATF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 41.8396318013385 0.056899836730939755 1 V[YV]VAT{M(Oxidation (M))|F} 7 2 57.039 0 0 5.1083 0 0 319.15315444160314 0 319.15315444160314 0 51.55410404594221 0 0 0 1.805462187404089 0 0.4247425010840047 0 V[YV]VAT{M(Oxidation (M))|F} 5.1083 - 69 NaN NaN 104829.3 NaN 10088 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13005 58.852 NaN 488050 35 0 49712 0.261 + 29303 TYNDQSITF 9 69 544.7484320549954 1087.4823111767907 2 544.7484130859375 MULTI HCD FTMS 0 0 0 12999 167101.25 0.39901095689979643 -3 0.08533096313476562 6 Unmodified _TYNDQSITF_ ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-3|IL33 106.94017166704063 0.003441928997083001 1 [YT][DN]QS{I|L}T{M(Oxidation (M))|F} 9 0 + 88.197 0 0 8.1102 8.1102 91.605 0 0 0 10.875912339897198 78.31957630725513 10.875912339897198 9.208187539523749 0 2.3807196863200843 1.3979400086720375 1.1307196863200843 1.1989700043360187 + + [YT][DN]QS{I|L}T{M(Oxidation (M))|F};[YT][DN][AG]S{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}T{[C(Carbamidomethyl (C))E]|[WC]}[KC]T{M(Oxidation (M))|F} 8.1102;7.2634;1.0933 +;-;- + 320 NaN NaN 177949.5 NaN 10089 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13006 58.855 NaN 196470 35 0 16836 0.263 + 2874 DYRPGACFNII 11 58 423.5414636926595 1267.6025616781785 3 423.5412292480469 MULTI HCD FTMS 0 0 0 12999 27545.03125 0.28181377768360266 6 -0.15980148315429688 7 Unmodified _DYRPGACFNII_ ENSG00000128242|ENST00000406361|GAL3ST1 15.248480904072842 0.3242218977034194 1 {I|L}Y 2 10 37.449 0 0 2.9543 0 0 0 988.4329184466345 988.4329184466345 19.34955642535897 0 0 0 0 0.25 1.6989700043360187 0 0 {I|L}Y 2.9543 - 33 + NaN NaN 114965.8 NaN 10090 2914 12999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13008 58.86 NaN 1053700 35 0 226820 0.327 -1 MMKPIQRFPQ 10 64 431.2248454575925 NaN 0 431.2362365722656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _M(Oxidation (M))MKPIQRFPQ_ ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant;ENSG00000104728|ENST00000349830|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF;nc|ENSG00000104728|O15013-4|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10 5.40270961882225 0.33556031839241995 1 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 1.2748 0 0 132.03347890171 465.2247310398918 597.2582099416018 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.2748 - 6 + NaN NaN 235039.2 NaN 10091 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13009 58.865 NaN 245810 35 0 16501 0.261 + 35673 YYITTRVQF 9 62 595.8135670541392 1189.6125811750783 2 595.8134765625 MULTI HCD FTMS 0 0 0 13007 96412.203125 0.7239748292897671 1 -0.029415130615234375 2 Unmodified _YYITTRVQF_ ENSG00000000938|ENST00000374005|FGR 51.41523569358685 0.02959097413485123 1 YY{I|L}TTRVQ{M(Oxidation (M))|F} 9 0 + 74.932 0 0 6.2988 6.2988 92.615 0 0 0 53.9625938194564 10.686814654273675 10.686814654273675 34.25495999259283 0 2.504432191740108 2 0 0.3054621874040891 + + YY{I|L}TTRVQ{M(Oxidation (M))|F};YY{I|L}[{I|L}P][HQ]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};YY{I|L}[{I|L}P][HK]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[RE]|[WV]}[PG]TT[VG]VQ{M(Oxidation (M))|F};YY{I|L}[VP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{I|L}];{[RE]|[WV]}D{I|L}Q[VG]VQ{M(Oxidation (M))|F};{[RE]|[WV]}D{I|L}[AG][VG]VQ{M(Oxidation (M))|F} 6.2988;3.4193;3.4193;2.3151;1.8384;1.543;0.77258 +;-;-;-;-;-;- + 327 + NaN NaN 131534.5 NaN 10092 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13010 58.868 NaN 207060 35 0 19449 0.261 + 47 AATMKAKTDLK 11 74 589.335310434525 1176.65606793585 2 589.3346557617188 MULTI HCD FTMS 0 0 0 13007 60262.00390625 0.12168790701008635 12 -0.32921600341796875 3 Unmodified _AATMKAKTDLK_ PRKAR1B|p.V215M|1|0.23|ENSG00000188191|chr7:596211-596211|C/T|missense_variant 18.373094154950223 0.29699704000378496 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}D 7 9 24.71 0 0 2.1 0 0 0 256.1680467533933 256.1680467533933 14.112781694939256 0 0 0 0 0.8494850021680094 0 0.5 0 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}D 2.1 - 401 NaN NaN 126125.2 NaN 10093 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13011 58.872 NaN 388120 35 0 33867 0.261 + 6996 FPWGDGNHTL 10 89 572.2646368236018 1142.5147207140035 2 572.7536010742188 MULTI HCD FTMS 0 0 0 13007 25831.498046875 0.21673606318689675 -6 0.16391372680664062 4 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 38.175570920033316 0.1612389583597779 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WDG 5 5 29.028 0 0 2.5407 0 0 0 537.243821626366 537.243821626366 11.861366441378177 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WDG 2.5407 - 656 NaN NaN 137474.3 NaN 10094 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13012 58.875 NaN 218560 35 0 28027 0.261 + 17691 MANVELSSL 9 58 490.2419811891857 978.4694094451714 2 490.24169921875 MULTI HCD FTMS 0 0 0 13007 78474.46875 0.5717172876211396 5 -0.13356781005859375 5 Oxidation (M) _M(Oxidation (M))ANVELSSL_ ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E 41.95555342248728 0.056367691549927025 1 E{I|L}SS{I|L} 5 4 52.167 0 0 5.3315 0 0 431.1830311505875 0 431.1830311505875 0 36.68243764792422 0 0 0 1.6989700043360187 0 0.5 0 + E{I|L}SS{I|L} 5.3315 + + 39 NaN NaN 120636.5 NaN 10095 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13013 58.878 NaN 244200 35 0 25954 0.261 + 27438 SYVNHLYVI 9 64 554.2950883706136 NaN 0 554.2952270507812 PEAK HCD FTMS 0 0 0 13007 81927.703125 0.8561028295263442 1 -0.029415130615234375 6 Unmodified _SYVNHLYVI_ ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5 29.081581746732265 0.1264406993618811 1 VY 2 7 13.583 0 0 1.2275 0 0 131.0846203641534 710.3277071588499 841.4123275230033 0 0 0 0 0 0.5 0 0 0 VY 1.2275 - 47 + NaN NaN 138003.3 NaN 10096 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13014 58.882 NaN 547770 35 0 59042 0.261 + 8775 HIDTILHVL 9 86 530.8111108748661 1059.6076688165322 2 530.811279296875 MULTI HCD FTMS 0 0 0 13007 89821.1796875 0.5405845441238176 -3 0.08195877075195312 7 Unmodified _HIDTILHVL_ ENSG00000213983|ENST00000397120|AP1G2;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556741.5_1_14:24032738-24033292:-|nuORF 92.8221339359638 0.0044520161739443126 1 [H{I|L}]D[{I|L}T]{I|L}HV{I|L} 9 0 + 60.286 0 0 5.6894 5.6894 85.682 0 0 0 15.258396522653683 18.681824436956525 15.258396522653683 6.976664759506974 0 1.4604093769761874 1.5228787452803376 0.8391368308784533 0 + + [H{I|L}]D[{I|L}T]{I|L}HV{I|L};[H{I|L}]E{[TV]|[{I|L}S]}{I|L}HV{I|L};[H{I|L}]D[{I|L}T]{I|L}VH{I|L};[H{I|L}]E{[TV]|[{I|L}S]}{I|L}VH{I|L};[H{I|L}]D[{I|L}T]V{I|L}H{I|L};[H{I|L}]E{[TV]|[{I|L}S]}V{I|L}H{I|L};[NP][PG][{I|L}T]{I|L}HV{I|L};[NP][PA]{[TV]|[{I|L}S]}{I|L}HV{I|L};[NP][PG][{I|L}T]{I|L}VH{I|L};[NP][PA]{[TV]|[{I|L}S]}{I|L}VH{I|L} 5.6894;5.031;4.3768;3.7184;3.551;2.8926;2.3749;2.0235;1.0623;0.71084 +;-;-;-;-;-;-;-;-;- + 919 NaN NaN 171589.5 NaN 10097 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13015 58.885 NaN 255230 35 0 66246 0.261 + 2361 DPEEDAPVL 9 44 492.7295014174596 983.4444499017192 2 492.72894287109375 MULTI HCD FTMS 0 0 0 13007 153532.53125 0.9557774249707365 -2 0.055751800537109375 8 Unmodified _DPEEDAPVL_ ENSG00000174231|ENST00000304992|PRPF8 21.74664581756881 0.17247014374749275 1 APV{I|L} 4 5 44.24 0 0 4.4985 0 0 585.1942616193375 0 585.1942616193375 0 37.250547101681875 0 0 0 1.3807196863200843 0 0 0 + APV{I|L} 4.4985 + + 26 NaN NaN 118907.1 NaN 10098 2915 13007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13017 58.89 NaN 4935400 35 0 1451300 0.327 + 31995 VYPLMKEYF 9 100 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 13016 3329418 0.7934177235702222 6 -0.15958023071289062 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 129.77232118876745 0.0006187813247758304 1 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 102.03 0 0 8.4699 8.4699 93.504 0 0 0 11.069758080123705 11.069758080123705 11.069758080123705 11.069758080123705 0 2.9604093769761874 2 1.2887254899964358 0.3494850021680094 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYEVY{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P]Y[DP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F} 8.4699;7.5509;7.4489;6.8844;6.5271;6.4237;6.3243;6.3217;6.2439;6.0517 +;+;-;-;-;-;-;-;-;- + 4092 + NaN NaN 762609.5 NaN 10099 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13018 58.894 NaN 1530900 35 0 672040 0.262 + 461 ALPSKLPTF 9 77 487.28933754837425 972.5641221635485 2 487.2892761230469 MULTI HCD FTMS 0 0 0 13016 386900.96875 0.7263511424478456 -1 0.029415130615234375 2 Unmodified _ALPSKLPTF_ ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF 31.26834338654808 0.10542797264966089 1 [{I|L}A]NEW{I|L}D 7 6 58.866 0 0 6.0527 0 0 0 128.15979466229263 128.15979466229263 39.886671539630555 0 0 0 0 0.5 1.6989700043360187 0.6549471895720984 0.6382104921644451 [{I|L}A]NEW{I|L}D 6.0527 - 406 NaN NaN 324375.2 NaN 10100 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13019 58.898 NaN 599160 35 0 45081 0.261 + 35744 YYLQGGFNKF 10 85 618.8062233247811 1235.597893716362 2 618.8060913085938 MULTI HCD FTMS 0 0 0 13016 260996.921875 0.4646618855035577 2 -0.055416107177734375 3 Unmodified _YYLQGGFNKF_ ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000164086|Q16829-2|DUSP7 114.6490535036381 4.5448240269034285E-05 1 YY{I|L}QN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F} 9 2 + 100.42 0 0 8.1269 8.1269 86.912 0 0 0 19.815534464597704 16.478174818886373 16.478174818886373 0.45757490560674796 0 2.579689690656103 1.6989700043360187 0 1.079689690656103 YY{I|L}QN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QN{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};[Q{I|L}]YYN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};[Q{I|L}]YYGG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F} 8.1269;8.0899;7.3817;7.3817;7.3482;7.1263;6.64;6.0793;5.3128;5.2758 -;+;-;-;-;-;-;-;-;- + 4037 NaN NaN 174196 NaN 10101 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13020 58.901 NaN 635920 35 0 87495 0.261 + 18843 NAELWQVSW 9 81 566.7748582236685 1131.535163514137 2 566.7749633789062 MULTI HCD FTMS 0 0 0 13016 221701.234375 0.7015966615007799 10 -0.2637748718261719 4 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 1 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 9 6 + 62.993 0 0 5.5671 5.5671 84.044 0 0 0 2.41037909400562 52.02439355929528 2.41037909400562 3.629909193596532 0 2.3807196863200843 0 0.7302046884880937 0 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW;[YN]{I|L}V[HD]VSW;{[CT]|[{M(Oxidation (M))|F}G]}SVV[HD]VSW;[YQ]VV[HD]VSW;{[CT]|[{M(Oxidation (M))|F}G]}SVV[HD]W[VS];[YR]{M(Oxidation (M))|F}{[MG]|[TS]}SW[VS];[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS{[DA]|[EG]};[YR]{M(Oxidation (M))|F}{[MG]|[TS]}WS[VS];[YN]{I|L}V[HD]W[VS];[YQ]VV[HD]W[VS] 5.5671;5.2463;4.7674;4.2567;3.8183;3.7341;3.4642;3.4642;3.4134;3.3075 -;-;-;-;-;-;-;-;-;- 821 NaN NaN 201812.9 NaN 10102 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13021 58.904 NaN 361950 35 0 40525 0.261 + 19854 NYAWVYYHM 9 73 631.7688949312696 1261.5232369293392 2 631.7684326171875 MULTI HCD FTMS 0 0 0 13016 207129.640625 0.719820142392612 6 -0.15958023071289062 5 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 81.86404211737425 0.005249203329642222 1 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 69.077 0 0 5.4757 5.4757 85.492 0 0 0 7.486512420283233 7.486512420283233 7.486512420283233 7.486512420283233 0 2.0994850021680094 1.6989700043360187 0 0 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWY[WE][KC];[YN]{[MG]|[TS]}[WK]Y[WD];[YN]AWE[WY][KC];[HT]YYYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]NAYVYH{M(Oxidation (M))|F};[WY]{[QG]|[NA]}YTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[MT][KC]{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]NAY[WE][KC] 5.4757;4.8822;2.6649;2.5253;2.3857;2.1395;1.8635;1.5527;1.1882;0.14167 -;-;-;-;-;-;-;-;-;- 950 + NaN NaN 140981.2 NaN 10103 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13022 58.908 NaN 472780 35 0 25798 0.261 + 7629 FYINGQNQI 9 88 548.7743450564469 1095.5341371796937 2 549.2852783203125 MULTI HCD FTMS 0 0 0 13016 63916.16796875 0.8308487397330444 -2 0.0556488037109375 6 Unmodified _FYINGQNQI_ ENSG00000137975|ENST00000370565|CLCA2 67.34385681178166 0.00994769994983633 1 NYE{I|L} 4 7 30.143 0 0 2.7514 0 0 558.2754994123062 0 558.2754994123062 0 6.057743964882722 0 0 0 0.5 0 0 0.6382104921644451 NYE{I|L} 2.7514 - 299 NaN NaN 153043.6 NaN 10104 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13023 58.911 NaN 239210 35 0 37762 0.261 + 7021 FPYPYAERL 9 63 578.2955224038284 1154.5764918744567 2 578.2952880859375 MULTI HCD FTMS 0 0 0 13016 108292.3125 0.8566597969898962 2 -0.055416107177734375 7 Unmodified _FPYPYAERL_ ENSG00000105464|ENST00000263269|GRIN2D 24.990960013464015 0.14443998892849796 1 YPYPE 5 5 46.454 0 0 4.0234 0 0 487.274217674025 0 487.274217674025 0 30.969100130080562 0 0 0 1 0 0 0 YPYPE 4.0234 - 43 NaN NaN 124332.6 NaN 10105 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13024 58.914 NaN 332790 35 0 29451 0.261 + 15514 LPDNVHYVF 9 89 552.2797111554536 1102.544869377707 2 552.2799682617188 MULTI HCD FTMS 0 0 0 13016 107071.2421875 1 0 0 8 Unmodified _LPDNVHYVF_ ENSG00000039123|ENST00000230640|MTREX 20.41453444215458 0.18397929046831515 1 [Y{I|L}]E[RN]YV{M(Oxidation (M))|F} 8 4 + 44.39 0 0 4.0261 4.0261 87.283 0 0 0 11.955094722265116 26.643200176607916 11.955094722265116 16.197887582883936 0 0.7742275032520141 1.2218487496163564 0 0.3494850021680094 [Y{I|L}]E[RN]YV{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y[RN]YV{M(Oxidation (M))|F};[DP][HK][TP]YV{M(Oxidation (M))|F};[DP][HK][DV]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][HD][W{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.0261;2.557;1.5925;1.1598;0.052688 -;-;-;-;- 268 NaN NaN 133289.4 NaN 10106 2916 13016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13026 58.919 NaN 815470 35 0 128860 0.327 + 10599 IPNEIIHAL 9 83 510.2976753503816 1018.5807977675632 2 510.297607421875 MULTI HCD FTMS 0 0 0 13025 232980.640625 0.8029256341415634 1 -0.02600860595703125 1 Unmodified _IPNEIIHAL_ ENSG00000099783|ENST00000325495|HNRNPM 70.33199760932243 0.0089807860198535 1 {I|L}PNE{I|L}{I|L}HA{I|L} 9 0 + 82.463 0 0 8.0958 8.0958 87.816 0 0 0 50.61288366702229 7.816658315635081 7.816658315635081 2.4865124202832334 0 2.353917193908117 1.3010299956639813 0.3807196863200844 0.3054621874040891 + + {I|L}PNE{I|L}{I|L}HA{I|L};{I|L}PEN{I|L}{I|L}HA{I|L};{I|L}PE{I|L}{I|L}NHA{I|L};{I|L}PGGE{I|L}{I|L}HA{I|L};{I|L}PE{I|L}N{I|L}HA{I|L};{I|L}PEGG{I|L}{I|L}HA{I|L};{I|L}PE{I|L}{I|L}GGHA{I|L};{I|L}PE{I|L}GG{I|L}HA{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{I|L}{I|L}{I|L}HA{I|L};[NP]E{I|L}{I|L}{I|L}HA{I|L} 8.0958;7.8517;7.4434;6.8919;6.7961;6.6478;5.9828;5.5922;4.8018;4.7379 +;-;-;-;-;-;-;-;-;- + 1468 + NaN NaN 197301.1 NaN 10107 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13027 58.923 NaN 237290 35 0 41768 0.261 + 31289 VWFPGGAF 8 72 440.7212878422356 879.4280227512712 2 440.7210998535156 MULTI HCD FTMS 0 0 0 13025 90933.5078125 0.07809065939964056 19 -0.4997215270996094 2 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.5120171699125776 1 WV 2 7 42.206 0 0 4.7993 0 0 0 591.2578159383612 591.2578159383612 15.013487579716767 0 0 0 0 0.4247425010840047 2 0 0 WV 4.7993 - 69 + NaN NaN 120518.4 NaN 10108 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13028 58.927 NaN 269650 35 0 29149 0.261 -1 FPAGYMYPSM 10 69 598.2437474687239 1194.4729420042477 2 598.2435302734375 MULTI HCD FTMS 0 0 0 13025 50361.9453125 0.27332939854064986 19 -0.4997215270996094 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 37.97399986684836 0.1629881689457739 1 [YG]EY{M(Oxidation (M))|F}[VS]PSS 10 -1 58.114 0 0 4.8652 0 0 0 74.96632514317267 74.96632514317267 52.62939886801425 0 0 0 0 1.0941876774005248 2 0.3807196863200844 0 [YG]EY{M(Oxidation (M))|F}[VS]PSS 4.8652 - 209 NaN NaN 145806.6 NaN 10109 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13029 58.93 NaN 558500 35 0 239350 0.261 + 15036 LLPSRQFGF 9 71 532.7980160339488 1063.5814791346975 2 532.7979736328125 MULTI HCD FTMS 0 0 0 13025 165698.65625 0.39849802962680714 -5 0.14078140258789062 4 Unmodified _LLPSRQFGF_ ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF 36.12702656103203 0.08312389501731911 1 {M(Oxidation (M))|F}G{M(Oxidation (M))|F} 3 6 20.546 0 0 1.9318 0 0 694.41260814036 0 694.41260814036 0 6.389530984084217 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}G{M(Oxidation (M))|F} 1.9318 + + 156 + NaN NaN 167001.8 NaN 10110 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13030 58.934 NaN 310250 35 0 14924 0.261 + 3302 EEFRKDFI 8 83 542.2774710116712 1082.5403890901423 2 542.2772827148438 MULTI HCD FTMS 0 0 0 13025 117427.0546875 0.7039761140153074 -9 0.24901962280273438 5 Unmodified _EEFRKDFI_ ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant;ENSG00000125703|ENST00000317868|ATG4C 12.531546534597751 0.5015908124873912 1 V{[MS]|[{M(Oxidation (M))|F}A]}S{I|L} 5 6 33.015 0 0 3.0498 0 0 547.2767811505875 0 547.2767811505875 0 17.432021610712596 0 0 0 0.8494850021680094 0 0.3807196863200844 0 V{[MS]|[{M(Oxidation (M))|F}A]}S{I|L} 3.0498 - 358 NaN NaN 134239.4 NaN 10111 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13031 58.937 NaN 448630 35 0 43358 0.261 + 6997 FPWGDGNHTL 10 84 572.2646368236018 1142.5147207140035 2 572.2634887695312 MULTI HCD FTMS 0 0 0 13025 166492.390625 0.8825163499920324 -7 0.19651031494140625 6 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 53.40400417844725 0.06540992187319636 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]ADM{I|L} 9 6 + 40.243 0 0 3.5223 3.5223 82.199 0 0 0 2.586193299134152 18.397030081275503 2.586193299134152 6.167053245199618 0 1.218765315847925 1.5228787452803376 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]ADM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};{M(Oxidation (M))|F}PWGTA{[CP]|[EA]}[HQ];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[Y{M(Oxidation (M))|F}]T[QP]M{I|L};{M(Oxidation (M))|F}PW[QT]{[CP]|[EA]}[HQ];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YE]GS[DP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NE{I|L}[{M(Oxidation (M))|F}E]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WDG[H{I|L}]S{[QG]|[NA]};[WP]{M(Oxidation (M))|F}[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};[YV]HHENP[{M(Oxidation (M))|F}T] 3.5223;2.9825;2.9056;2.4355;2.095;1.8383;1.7301;1.6735;0.99925;0.77198 -;-;-;-;-;-;-;-;-;- 1253 NaN NaN 160829.6 NaN 10112 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13032 58.94 NaN 91380 35 0 9210.6 0.261 + -1 IDQYHRWW 8 46 623.2949829101562 NaN 0 623.2949829101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IDQYHRWW_ REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF 2.302733041254933 0.38822285293237185 1 EE 2 -1 10.969 0 0 0.88206 0 0 131.0998280601737 851.3748873346311 982.4747153948049 0 0 0 0 0 0 0 0 0 EE 0.88206 - 8 + NaN NaN 108541.4 NaN 10113 2917 13025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13034 58.945 NaN 2179400 35 0 240630 0.327 -1 EYMEHVYLI 9 106 606.7838077584753 1211.5530625837505 2 606.7982788085938 MULTI HCD FTMS 0 0 0 13033 142834.25 0.19769417294109515 14 -0.3791923522949219 1 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 1 MEE{M(Oxidation (M))|F}EN{I|L} 7 -1 66.967 0 0 5.5274 0 0 0 316.1412752740844 316.1412752740844 30.575410485654785 0 0 0 0 0 0 0.8391368308784531 1.3494850021680094 MEE{M(Oxidation (M))|F}EN{I|L} 5.5274 - 13593 + NaN NaN 403334.4 NaN 10114 2918 13033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13035 58.949 NaN 276600 35 0 25148 0.261 + 18771 NAANIFERL 9 73 524.2827074858326 1046.550862038465 2 524.2823486328125 MULTI HCD FTMS 0 0 0 13033 134549.96875 0.41946929950870954 4 -0.10416412353515625 2 Unmodified _NAANIFERL_ ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 103.82355648334675 0.003950725192926219 1 {[QG]|[NA]}AN{I|L}{M(Oxidation (M))|F}ER{I|L} 9 0 + 105.69 0 0 10.099 10.099 93.882 0 0 0 20.74539712336197 16.478174818886373 16.478174818886373 9.208187539523749 0 2.8494850021680094 1.5228787452803376 0 2.115356566548286 + + {[QG]|[NA]}AN{I|L}{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}AGG{I|L}{M(Oxidation (M))|F}ER{I|L};QQN{I|L}{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}AN{I|L}{M(Oxidation (M))|F}{[NV]|[RG]}[KG];QQGG{I|L}{M(Oxidation (M))|F}ER{I|L};{[QG]|[NA]}AGG{I|L}{M(Oxidation (M))|F}{[NV]|[RG]}[KG];{[QG]|[NA]}A[DP][YK]R{I|L};QQN{I|L}{M(Oxidation (M))|F}{[NV]|[RG]}[KG];QQGG{I|L}{M(Oxidation (M))|F}{[NV]|[RG]}[KG];QQ[DP][YK]R{I|L} 10.099;9.219;7.213;6.5815;6.328;5.7058;5.1397;3.6905;2.8107;2.2539 +;-;-;-;-;-;-;-;-;- + 367 NaN NaN 125539.5 NaN 10115 2918 13033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13036 58.953 NaN 236670 35 0 28761 0.261 + 29177 TYISWKEEL 9 62 584.7981221698785 1167.581691406557 2 584.798828125 MULTI HCD FTMS 0 0 0 13033 97441.171875 0.23461882499073372 8 -0.2083587646484375 3 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 27.223235318498237 0.1251536255799991 1 [YT]{I|L}SW 5 4 55.713 0 0 4.7717 0 0 0 514.2515081908556 514.2515081908556 36.249387366083 0 0 0 0 1 2 0.3494850021680094 0 + [YT]{I|L}SW 4.7717 + + 51 + NaN NaN 119978.3 NaN 10116 2918 13033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13037 58.956 NaN 346780 35 0 36774 0.261 + -1 YGLTMAGIIKI 11 65 598.3396595328152 NaN 0 598.3077392578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YGLTM(Oxidation (M))AGIIKI_ REV__tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1 9.38312468134398 0.31550292094573573 1 SP[VS]{M(Oxidation (M))|F}YE 7 -1 19.346 0 0 1.6193 0 0 165.23860600165682 217.06260095767814 382.301206959335 0 0 0 0 0 0 0 0.7134679910804405 0 SP[VS]{M(Oxidation (M))|F}YE 1.6193 - 249 + NaN NaN 130578.8 NaN 10117 2918 13033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13038 58.96 NaN 235170 35 0 37865 0.261 + 35038 YTILIKYGG 9 54 514.294522078732 1026.574491224264 2 514.2942504882812 MULTI HCD FTMS 0 0 0 13033 56690.3828125 0.6648948949554306 1 -0.022701263427734375 5 Unmodified _YTILIKYGG_ ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 19.256988751693697 0.19398022840297344 1 [YT]{I|L}{I|L}P 5 5 49.125 0 0 4.7853 0 0 0 436.21845422916255 436.21845422916255 26.293709283484077 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 [YT]{I|L}{I|L}P 4.7853 - 67 + NaN NaN 112027.8 NaN 10118 2918 13033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13039 58.963 NaN 82370 35 0 4643.5 0.261 -1 SCTAWQCFFQ 10 53 639.2581787109375 NaN 0 639.2581787109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _SCTAWQC(Carbamidomethyl (C))FFQ_ ENST00000581885.1_1_17:62532731-62533407:+|nuORF 3.2813086475875832 0.33737594360511275 1 AW 2 -1 21.013 0 0 1.6475 0 0 277.1072784162123 738.2572115533811 1015.3644899695935 0 0 0 0 0 1.1549471895720984 0 0 0 AW 1.6475 + + 51 + NaN NaN 98164.5 NaN 10119 2918 13033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13041 58.968 NaN 2605200 35 0 297300 0.327 + 4670 EYPDRIMNTF 10 101 643.2977950714372 1284.5810372096744 2 643.2977905273438 MULTI HCD FTMS 0 0 0 13040 1614456.875 0.5186104034034215 5 -0.14357376098632812 1 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 146.67986876980638 2.849702000123902E-07 1 EYPDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 100.51 0 0 7.8242 7.8242 89.046 0 0 0 56.64147851549035 22.89951721184711 22.89951721184711 6.069758080123691 0 2.247425010840047 1.6989700043360187 1.5387254899964358 1.2803695511246984 + + EYPDR{I|L}MNT{M(Oxidation (M))|F};EYP{[RE]|[WV]}VMNT{M(Oxidation (M))|F};EYPDR{I|L}MGGT{M(Oxidation (M))|F};EYP{[RE]|[WV]}VMGGT{M(Oxidation (M))|F};EYPD{[VA]|[{I|L}G]}V[HQ]{NN|[MP]|[D{I|L}]|[EV]};EYP{[RE]|[WV]}T{M(Oxidation (M))|F}N{[ET]|[MV]};EYPD[PA][H{I|L}]N{[ET]|[MV]};{[QS]|[NT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}P[WP]ET{M(Oxidation (M))|F};EYP[RN][YV]D{[ET]|[MV]};[NS]{[MG]|[TS]}{[RE]|[WV]}VMNT{M(Oxidation (M))|F} 7.8242;7.3517;6.5766;6.1041;4.4721;3.8629;3.3743;3.3392;3.2434;3.1659 +;-;-;-;-;-;-;-;-;- + 2976 + NaN NaN 492657.9 NaN 10120 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13042 58.972 NaN 561220 35 0 57944 0.263 + 1488 AYTPFHAVL 9 80 509.7715634460214 1017.5285739588428 2 509.770751953125 MULTI HCD FTMS 0 0 0 13040 205937.421875 0.09409373138471186 16 -0.4315032958984375 2 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 46.92087301778293 0.0358782797343276 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4 5 45.177 0 0 4.4399 0 0 0 582.3051851861936 582.3051851861936 19.281578036071565 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4.4399 + + 972 + NaN NaN 174155.2 NaN 10121 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13043 58.976 NaN 299110 35 0 33745 0.261 + 16809 LYECTGQFDF 10 58 611.7580001998368 1221.5014474664736 2 611.757568359375 MULTI HCD FTMS 0 0 0 13040 80951.2109375 0.20961702012306238 -4 0.10753250122070312 3 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 28.494509381512117 0.24525010509582015 1 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 52.752 0 0 4.3186 0 0 305.13585097480626 0 305.13585097480626 0 43.71092286673715 0 0 0 2.3494850021680094 0 0.3807196863200844 0 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.3186 - 146 NaN NaN 134054.3 NaN 10122 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13044 58.979 NaN 661700 35 0 94672 0.261 + 31431 VYAVIPAEKF 10 98 568.8209451163469 NaN 0 568.8203735351562 PEAK HCD FTMS 0 0 0 13040 101503.7578125 1 0 0 4 Unmodified _VYAVIPAEKF_ ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF;nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1 45.69961567697781 0.10428268281932927 1 AV{I|L}WK 5 6 20.08 0 0 1.7682 0 0 262.1297293143278 273.12451860882487 535.2542479231527 0 0 0 0 0 1.4049471895720984 0 0 0 AV{I|L}WK 1.7682 - 1638 + NaN NaN 192898.5 NaN 10123 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13045 58.982 NaN 284420 35 0 20593 0.261 + 48 AATMKAKTDLK 11 91 589.335310434525 1176.65606793585 2 589.8355712890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _AATMKAKTDLK_ PRKAR1B|p.V215M|1|0.23|ENSG00000188191|chr7:596211-596211|C/T|missense_variant 18.373094154950223 0.29699704000378496 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}D 7 9 20.634 0 0 1.7536 0 0 0 256.16980689152257 256.16980689152257 7.1217612038363125 0 0 0 0 0.805462187404089 0 0.805462187404089 0 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}D 1.7536 - 307 NaN NaN 142398.4 NaN 10124 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13046 58.986 NaN 312790 35 0 36285 0.261 + 17159 LYLQRVAEL 9 86 552.8236467089495 NaN 0 552.8241577148438 PEAK HCD FTMS 0 0 0 13040 56691.890625 0.806976963237017 -4 0.10753250122070312 6 Unmodified _LYLQRVAEL_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant 43.77239144664712 0.06617713280084607 1 EKEQ 4 8 15.904 0 0 1.4411 0 0 131.08639908204526 455.2500808408569 586.3364799229022 0 0 0 0 0 0.3252574989159953 0 0 0 EKEQ 1.4411 - 128 + NaN NaN 131394.9 NaN 10125 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13047 58.989 NaN 130580 35 0 37063 0.261 + 10737 IRGRALVRFW 10 51 637.3860334764032 NaN 0 637.4414672851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IRGRALVRFW_ tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1 0.4007161486938917 0.3398413315442166 1 PDD 3 10 18.188 0 0 1.429 0 0 187.27492232214382 755.3588350885374 942.6337574106813 0 0 0 0 0 0.5 0 0 0 PDD 1.429 - 9 + NaN NaN 107462.9 NaN 10126 2919 13040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13049 58.994 NaN 1009000 35 0 162880 0.327 -1 0 96 582.3449039786885 1162.675255024177 2 582.3447875976562 MULTI HCD FTMS 0 0 0 13048 468523.96875 0.09691987809820037 16 -0.4249763488769531 1 NaN NaN 1 D{I|L}VWMK{I|L} 7 -1 62.005 0 0 5.3329 0 0 259.1894646334551 0 259.1894646334551 0 26.348920760838958 0 0 0 1.805462187404089 0 1.2302046884880937 0 D{I|L}VWMK{I|L} 5.3329 - 1380 NaN NaN 237040.2 NaN 10127 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13050 58.998 NaN 610400 35 0 55127 0.261 -1 LLGCKCFTF 9 79 544.766993078823 NaN 0 544.748046875 PEAK HCD FTMS 0 0 0 13048 25337.029296875 0.41487482174615375 -3 0.07474517822265625 2 Carbamidomethyl (C) _LLGC(Carbamidomethyl (C))KCFTF_ ENST00000396128.8_1_14:45397628-45397811:-|nuORF 16.942295170755138 0.2079222001251384 1 T{I|L}SQ 4 -1 38.264 0 0 3.5185 0 0 165.1167249853807 490.15741907291255 655.2741440582932 0 0 0 0 0 0 0 1.0356668758921828 1.1989700043360187 T{I|L}SQ 3.5185 - 386 + NaN NaN 171911.7 NaN 10128 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13051 59.002 NaN 374030 35 0 40205 0.261 + 35846 YYQNYFEKL 9 68 634.3036450504073 1266.5927371676146 2 634.3034057617188 MULTI HCD FTMS 0 0 0 13048 335540.75 0.16410149630895948 18 -0.4705963134765625 3 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 110.79276546118962 0.0028129822227594098 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 107.75 0 0 8.507 8.507 92.28 0 0 0 7.772861173562674 7.772861173562674 7.772861173562674 9.208187539523749 0 3.004432191740108 2 0.6747425010840047 0.7134679910804405 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L};YYN[AG]Y{M(Oxidation (M))|F}EK{I|L};YYGG[AG]Y{M(Oxidation (M))|F}EK{I|L};YYQN[Q{I|L}]YY{I|L};YYNQ[Q{I|L}]YY{I|L} 8.507;7.78;7.78;7.1844;7.0564;6.4574;6.4574;4.832;3.4406;2.7317 +;-;-;-;-;-;-;-;-;- + 276 + NaN NaN 139267.2 NaN 10129 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13052 59.005 NaN 716920 35 0 44585 0.261 + 588 APFKFDMEL 9 96 557.2677166492853 1112.5208803653704 2 557.7695922851562 MULTI HCD FTMS 0 0 0 13048 244332.0625 0.7417496680513829 -4 0.10415267944335938 4 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 114.20165948288297 0.0022564706844261533 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 82.45 0 0 7.4111 7.4111 92.265 0 0 0 12.660189108278544 12.660189108278544 12.660189108278544 12.660189108278544 0 2.6549471895720984 0 1.8098943791441968 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};AP{M(Oxidation (M))|F}YQV{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}Y[AG]V{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}YQV{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{[{M(Oxidation (M))|F}D]|MM}A{M(Oxidation (M))|F}E{I|L};{I|L}{[DS]|[MA]|[CV]|TT}K{M(Oxidation (M))|F}D{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 7.4111;6.2731;6.1254;5.8032;5.0131;4.9755;4.5175;4.3085;3.7474;3.716 +;+;-;-;-;-;-;-;-;- + 1826 + NaN NaN 200659 NaN 10130 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13053 59.008 NaN 313970 35 0 58418 0.263 + 12646 KWFFQKLRF 9 56 433.91669708106457 1298.7282618433937 3 433.9163818359375 MULTI HCD FTMS 0 0 0 13048 183526.90625 0.24747610954134214 22 -0.5753135681152344 5 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 40.23920728925047 0.06424668180817725 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 71.099 0 0 5.4745 5.4745 83.522 0 0 0 13.590671722280234 12.972287753157516 12.972287753157516 3.0102999566398125 0 0.9247425010840047 0 0 0.7059771852360797 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 5.4745;5.2427;4.7655;4.5337;4.4756;4.428;4.2439;3.7666;3.719;3.5348 +;-;-;-;-;-;-;-;-;- + 301 + NaN NaN 142359.7 NaN 10131 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13054 59.012 NaN 335150 35 0 38020 0.261 -1 IPDEQIVVM 9 75 530.2731571092106 1058.5317612852211 2 530.2727661132812 MULTI HCD FTMS 0 0 0 13048 119524.90625 0.7258828057419333 -4 0.10415267944335938 6 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 22.736283301280096 0.1639198954644489 1 {I|L}VV{M(Oxidation (M))|F} 4 -1 47.933 0 0 4.5283 0 0 582.2653675763687 0 582.2653675763687 0 31.72499380678772 0 0 0 1.75 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.5283 + + 236 NaN NaN 134532 NaN 10132 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13055 59.015 NaN 128170 35 0 14187 0.261 + 19168 NHSKVTTL 8 38 450.249267578125 NaN 0 450.249267578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NHSKVTTL_ JARID2-HFE|4|fusion;nc|ENSG00000010704|Q30201-10|HFE 5.230669730166228 0.38822285293237185 1 T 1 7 15.044 0 0 1.6763 0 0 131.09299026452896 662.3171818831562 793.4101721476852 0 0 0 0 0 0.805462187404089 0 0 0 + T 1.6763 + + 6 + NaN NaN 103349.6 NaN 10133 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13056 59.018 NaN 321000 35 0 28308 0.261 + 26837 SYIHYVFRL 9 56 599.3251277374189 1196.6357025416378 2 599.323974609375 MULTI HCD FTMS 0 0 0 13048 64739.64453125 0.2627248205287866 -4 0.10415267944335938 8 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 43.77239144664712 0.04802738721622131 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}HYV{M(Oxidation (M))|F}R{I|L} 9 0 + 49.007 0 0 4.0954 4.0954 80.498 0 0 0 1.172137691284405 1.172137691284405 1.172137691284405 1.172137691284405 0 2.3935078169319297 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}HYV{M(Oxidation (M))|F}R{I|L};[H{I|L}]A{I|L}VYH{I|L}[MT];{I|L}HA{I|L}VYH{I|L}[MT];[H{I|L}]A{I|L}VYH[MT]{I|L};{[WN]|[YH]}{[TV]|[{I|L}S]}YV{M(Oxidation (M))|F}R{I|L};{[WN]|[YH]}{[TV]|[{I|L}S]}YV{I|L}[R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}[RV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}VV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[WR] 4.0954;3.9974;3.7875;3.6425;3.2016;1.9523;1.7199;0.47069;0.32251 +;-;-;-;-;-;-;-;- + 153 NaN NaN 126033.5 NaN 10134 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13057 59.022 NaN 231900 35 0 47404 0.262 + 4 AADDTEISF 9 58 484.71362577817285 967.4126986231457 2 484.7135314941406 MULTI HCD FTMS 0 0 0 13048 148026.296875 0.9216966518350977 -3 0.07474517822265625 9 Unmodified _AADDTEISF_ ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL 52.268347100219714 0.028397529699942435 1 TE{I|L}S{M(Oxidation (M))|F} 5 4 49.112 0 0 5.0767 0 0 372.13060741396447 0 372.13060741396447 0 32.20114073819602 0 0 0 1.805462187404089 0 0 0 + TE{I|L}S{M(Oxidation (M))|F} 5.0767 + + 104 + NaN NaN 116618.5 NaN 10135 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13058 59.025 NaN 161020 35 0 7136.3 0.261 + 33591 YIQRRKEL 8 70 553.3258694636069 NaN 0 553.325927734375 PEAK HCD FTMS 0 0 0 13048 24190.521484375 0.4074765167688674 1 -0.036022186279296875 10 Unmodified _YIQRRKEL_ REV__ENSG00000067842|ENST00000263519|ATP2B3;REV__nc|ENSG00000067842|Q16720-2|ATP2B3;REV__nc|ENSG00000067842|Q16720-3|ATP2B3;REV__nc|ENSG00000067842|Q16720-4|ATP2B3;REV__nc|ENSG00000067842|Q16720-5|ATP2B3;REV__nc|ENSG00000067842|Q16720-6|ATP2B3;REV__nc|ENSG00000067842|Q16720-7|ATP2B3;REV__nc|ENSG00000067842|Q16720-8|ATP2B3 10.183394434864962 0.38822285293237185 1 NQ{I|L}{M(Oxidation (M))|F} 4 -1 13.704 0 0 1.2406 0 0 147.15679156217612 452.21503626041255 599.3718278225887 0 0 0 0 0 0 0 0 0.3807196863200844 NQ{I|L}{M(Oxidation (M))|F} 1.2406 - 96 + NaN NaN 98467.2 NaN 10136 2920 13048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13060 59.03 NaN 1968900 35 0 153850 0.327 + 27047 SYMGHFDLL 9 117 549.749911500793 1097.485270068386 2 549.7494506835938 MULTI HCD FTMS 0 0 0 13059 770230.9375 0.07345720903191731 -7 0.19582366943359375 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 1 {I|L}D[C(Carbamidomethyl (C))R]QE{M(Oxidation (M))|F} 7 9 50.679 0 0 4.6177 0 0 131.09459489661646 0 131.09459489661646 0 27.221806183710765 0 0 0 0.6307196863200843 0 1.4361818737241734 0.3054621874040891 {I|L}D[C(Carbamidomethyl (C))R]QE{M(Oxidation (M))|F} 4.6177 - 2100 + NaN NaN 387722 NaN 10137 2921 13059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13061 59.034 NaN 132580 35 0 24988 0.261 + 2362 DPEEDAPVL 9 48 492.7295014174596 983.4444499017192 2 492.72955322265625 MULTI HCD FTMS 0 0 0 13059 61610.03515625 0.3835374840405178 4 -0.10750961303710938 2 Unmodified _DPEEDAPVL_ ENSG00000174231|ENST00000304992|PRPF8 4.3292370932331545 0.3181982124262546 1 S 1 9 7.2185 0 0 0.734 0 0 569.1994985851161 324.19259367498 893.3920922600961 0 0 0 0 0 0.5 0 0 0 S 0.734 - 4 + NaN NaN 116385.9 NaN 10138 2921 13059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13062 59.038 NaN 190250 35 0 15201 0.262 + 21642 PYRLIFEKF 9 64 404.8973420405621 1211.6701967218862 3 404.8968811035156 MULTI HCD FTMS 0 0 0 13059 39658.05078125 0.07549498876430964 19 -0.49358367919921875 3 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 29.43715596616401 0.11383414875064776 1 PY 2 7 32.008 0 0 2.6416 0 0 0 948.5309283097534 948.5309283097534 13.59144469425068 0 0 0 0 0.25 1.154901959985743 0 0 + PY 2.6416 + + 62 + NaN NaN 118446.9 NaN 10139 2921 13059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13063 59.041 NaN 170560 35 0 16343 0.261 + 28052 TGIWGHLF 8 41 465.74483631644523 NaN 0 465.7445068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _TGIWGHLF_ ENST00000265801.6_2_8:20104052-20104400:-|nuORF 5.760428011301431 0.38822285293237185 1 VQ[TA]V 5 8 11.254 0 0 1.2108 0 0 131.09231060140525 297.09955774478755 428.1918683461928 0 0 0 0 0 0 0 0.3807196863200844 0 VQ[TA]V 1.2108 - 25 + NaN NaN 100534.4 NaN 10140 2921 13059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13064 59.044 NaN 118360 35 0 9376.8 0.261 -1 LSVMAFDRYI 10 53 636.8168812749674 NaN 0 636.7861938476562 PEAK HCD FTMS 0 0 0 13059 14547.115234375 0.6817370974826761 -1 0.036022186279296875 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LSVM(Oxidation (M))AFDRYI_ ENSG00000172742|ENST00000641962|OR4D9;OR4D9|p.A125T|1|0.13|ENSG00000172742|chr11:59515285-59515285|G/A|missense_variant;OR4D9|p.N172Mfs*27|1|0.27|ENSG00000172742|chr11:59515423-59515423|C/-|frameshift_variant 1.3295316138638542 0.339046394236575 1 K 1 -1 6.9897 0 0 0.54967 0 0 132.09409766562072 1008.3955782525999 1140.4896759182207 0 0 0 0 0 0 0 0 0 K 0.54967 - 4 + NaN NaN 108617.4 NaN 10141 2921 13059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13066 59.049 NaN 5575900 35 0 649010 0.327 + 13289 KYMDVQFDF 9 119 604.7681727029972 1207.5217924727942 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13065 3989084.75 0.9946569802915487 -2 0.05542755126953125 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 148.26817274609934 1.0657023776783114E-05 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 89.139 0 0 7.382 7.382 85.795 0 0 0 0.4845500650402812 9.933335073386615 0.4845500650402812 0.4845500650402812 0 2.274227503252014 0 1.5400990676322905 0.9604093769761877 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}KDQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QKD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}VDQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.382;7.3419;7.1793;7.1112;7.0022;6.9643;6.8491;6.8385;6.6876;6.6194 +;-;-;-;-;-;-;-;-;- + 17667 NaN NaN 861533 NaN 10142 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13067 59.054 NaN 634080 35 0 266110 0.263 + 444 ALIAQLTPF 9 60 487.28933754837425 972.5641221635485 2 487.2889709472656 MULTI HCD FTMS 0 0 0 13065 157324.890625 0.29535494421258435 5 -0.14022064208984375 2 Unmodified _ALIAQLTPF_ REV__ENSG00000069122|ENST00000283296|ADGRF5;REV__nc|ENSG00000069122|Q8IZF2-2|ADGRF5;REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5 15.847184025352803 0.2234401846867398 1 [{I|L}A]N[WE]{I|L}D 7 -1 31.444 0 0 3.2331 0 0 0 128.15895560984407 128.15895560984407 14.453869454431114 0 0 0 0 0.5 1.5228787452803376 0 0 [{I|L}A]N[WE]{I|L}D 3.2331 - 124 NaN NaN 196885.3 NaN 10143 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13068 59.057 NaN 737860 35 0 80489 0.261 + 24560 RYLNEFEEL 9 99 606.7981303841627 1211.5817078351254 2 607.8013305664062 MULTI HCD FTMS 0 0 0 13065 110768.921875 0.2070258976462186 5 -0.14022064208984375 3 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 41.95555342248728 0.056367691549927025 1 DVT[DP]{M(Oxidation (M))|F}E{[QN]|[E{I|L}]|[KN]} 9 5 42.224 0 0 3.485 0 0 148.13067194882598 0 148.13067194882598 0 26.025976653426195 0 0 0 1.1989700043360187 0 1.6694451763165201 0.2614393726401688 DVT[DP]{M(Oxidation (M))|F}E{[QN]|[E{I|L}]|[KN]} 3.485 - 1219 + NaN NaN 212327.8 NaN 10144 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13069 59.061 NaN 809400 35 0 108620 0.261 + 17023 LYIVHPTMF 9 105 568.7942097295122 1135.5738665258243 2 568.7935791015625 MULTI HCD FTMS 0 0 0 13065 258202.796875 0.5524549726058878 -4 0.10416412353515625 4 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 146.00731375242447 1.3047045798573153E-05 1 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 106.31 0 0 9.3618 9.3618 98.159 0 0 0 82.15350013324773 16.478174818886373 16.478174818886373 50.859790849763655 0 2.610924374808178 1.6989700043360187 1.2856668758921828 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}E{I|L}{[DS]|[MA]|[CV]|TT};{I|L}Y{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}[DV]{[ET]|[MV]} 9.3618;4.883;3.8117;2.6054 +;-;-;- + 2825 + NaN NaN 229690.2 NaN 10145 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13070 59.064 NaN 623590 35 0 65210 0.261 + 7736 FYMDTSHLF 9 88 588.7553249197848 1175.4960969063695 2 588.7547607421875 MULTI HCD FTMS 0 0 0 13065 278871.5 0.8243311924224132 -2 0.05542755126953125 5 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 107.99703571036002 0.003269392969029945 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 77.77 0 0 6.6159 6.6159 90.579 0 0 0 64.7273429256591 6.7074145675533 6.7074145675533 11.971128017558641 0 2.666386562212267 0 0.8252574989159953 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];[DP][MN]DK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[QP]G{[CA]|SS}[YV]{M(Oxidation (M))|F}YE;[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTS[R{I|L}]Q;[QP][EC]DK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[QP]G{[CA]|SS}[YV]EY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][TA][HV]{M(Oxidation (M))|F}YE;[Y{M(Oxidation (M))|F}][TA][HV]EY{M(Oxidation (M))|F} 6.6159;5.5975;4.755;3.2136;2.9781;2.9712;2.7014;2.0233;1.9066;1.7384 +;+;-;-;-;-;-;-;-;- + 742 + NaN NaN 176650.8 NaN 10146 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13071 59.067 NaN 462520 35 0 40254 0.261 + 19855 NYAWVYYHM 9 77 631.7688949312696 1261.5232369293392 2 631.7683715820312 MULTI HCD FTMS 0 0 0 13065 78143.2578125 0.2715646625750348 12 -0.323944091796875 6 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 114.94377779790601 0.0021353177819039447 1 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 87.55 0 0 6.94 6.94 91.503 0 0 0 13.614079997524783 13.614079997524783 13.614079997524783 13.02378753635658 0 2.6549471895720984 1.6989700043360187 0 1.7689301784845295 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AW[SG]T[WM]{M(Oxidation (M))|F};[YN]WA[SG]T[WM]{M(Oxidation (M))|F};[YN]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}YH{M(Oxidation (M))|F};[YN]WTNT[WM]{M(Oxidation (M))|F};[YN]AWY[WE][KC];[WY]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[SG]WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]NAYVYH{M(Oxidation (M))|F} 6.94;5.9076;4.9802;4.5712;3.5389;3.5336;3.1575;2.6446;2.4945;2.4524 -;-;-;-;-;-;-;-;-;- 1156 NaN NaN 154615.1 NaN 10147 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13072 59.07 NaN 309440 35 0 51542 0.261 + 17960 MITDLEERL 9 80 560.2892314814669 1118.5639100297337 2 560.2886352539062 MULTI HCD FTMS 0 0 0 13065 22446.21875 0.21299877639997672 2 -0.06211090087890625 7 Unmodified _MITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 22.65808497894818 0.16459551161911185 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E[{I|L}V]W 9 3 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} + + 28.46 23.724 9.7179 2.5444 2.5444 59.049 0 0 0 0 13.1081198970444 0 0 0 0.8494850021680094 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E[{I|L}V]W 2.5444 - 188 + NaN NaN 126698.5 NaN 10148 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13073 59.074 NaN 250030 35 0 34633 0.261 + -1 MPCCLLFL 8 61 506.7353258678925 NaN 0 506.7359924316406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PCC(Carbamidomethyl (C))LLFL_ REV__ENST00000465804.5_1_3:149238269-149238374:-|nuORF 6.354104778181461 0.38822285293237185 1 P{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.78687 0 0 147.03959607359633 617.3028048150999 764.3424008886961 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 0.78687 - 10 + NaN NaN 122861.2 NaN 10149 2922 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13075 59.079 NaN 877370 35 0 374700 0.327 + 15037 LLPSRQFGF 9 72 532.7980160339488 1063.5814791346975 2 532.7979736328125 MULTI HCD FTMS 0 0 0 13074 340860.53125 0.8197546869404484 1 -0.032749176025390625 1 Unmodified _LLPSRQFGF_ ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF 40.23920728925047 0.06424668180817725 1 {I|L}{I|L}PA 4 6 47.907 0 0 4.5043 0 0 0 666.3092318266162 666.3092318266162 15.60016905927597 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}{I|L}PA 4.5043 - 257 + NaN NaN 217553.8 NaN 10150 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13076 59.083 NaN 915940 35 0 188720 0.261 + 9448 HPVSLEQYL 9 89 543.285254830603 1084.5559567280059 2 543.2849731445312 MULTI HCD FTMS 0 0 0 13074 307452.75 0.5439845360796242 -3 0.08478927612304688 2 Unmodified _HPVSLEQYL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 75.76082778847304 0.0072241045649327805 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{I|L}EQY{I|L} 9 0 + 55.786 0 0 5.1437 5.1437 84.48 0 0 0 6.37131607423747 16.478174818886373 6.37131607423747 6.37131607423747 0 1.8424778212679485 0 1.305462187404089 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{I|L}EQY{I|L};[YN][KA][VS]QY{I|L};[YN]{I|L}[KQ][SG]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{I|L}E[AG]Y{I|L};{[QN]|[E{I|L}]|[KN]}YA[VS]QY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[VS]QY{I|L};[YN][KA]K{[DA]|[EG]}Y{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[KG][VS]QY{I|L};{[QN]|[E{I|L}]|[KN]}YA[VS][AG]Y{I|L};[YQ][KG][VS]QY{I|L} 5.1437;4.5563;4.1423;3.9724;3.6618;3.3319;3.2202;3.0791;2.8128;2.7544 +;-;-;-;-;-;-;-;-;- + 1804 NaN NaN 228785.5 NaN 10151 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13077 59.087 NaN 613560 35 0 102770 0.263 + 2816 DYKRLFFRF 9 49 431.2361827741623 1290.6867189226869 3 431.2360534667969 MULTI HCD FTMS 0 0 0 13074 75309.0390625 0.19172987678601405 7 -0.18344879150390625 3 Unmodified _DYKRLFFRF_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 14.405379775768559 0.2358970535022398 1 DYK 3 6 43.188 0 0 3.3461 0 0 0 881.4815736090197 881.4815736090197 22.21848749616356 0 0 0 0 0 1.6989700043360187 0 0 + DYK 3.3461 + + 21 + NaN NaN 166017.6 NaN 10152 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13078 59.09 NaN 365200 35 0 29153 0.261 + 35925 YYTLGDSACTF 11 63 620.7636936554854 1239.5128343777708 2 620.7636108398438 MULTI HCD FTMS 0 0 0 13074 234583.8125 1 0 0 4 Unmodified _YYTLGDSACTF_ REV__ENSG00000127578|ENST00000319070|WFIKKN1;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 13.042465956692817 0.3434429782671734 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 57.938 0 0 4.6742 0 0 262.0951405255875 0 262.0951405255875 0 50.59131362978043 0 0 0 1 0 0.3252574989159953 0.3494850021680094 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6742 - 244 NaN NaN 140162.2 NaN 10153 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13079 59.093 NaN 226090 35 0 39499 0.264 + 31290 VWFPGGAF 8 55 440.7212878422356 879.4280227512712 2 440.72119140625 MULTI HCD FTMS 0 0 0 13074 73258.7734375 0.06291218784102427 25 -0.6305923461914062 5 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.5120171699125776 1 WV 2 7 42.206 0 0 4.7993 0 0 0 591.2575879027441 591.2575879027441 28.226825097560422 0 0 0 0 0.4247425010840047 2 0 0 WV 4.7993 - 31 + NaN NaN 116098.7 NaN 10154 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13080 59.097 NaN 308970 35 0 32480 0.261 + 35847 YYQNYFEKL 9 58 634.3036450504073 1266.5927371676146 2 634.3036499023438 MULTI HCD FTMS 0 0 0 13074 191070.71875 0.0934461487843231 21 -0.536163330078125 6 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 110.79276546118962 0.0028129822227594098 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 106.18 0 0 8.3833 8.3833 92.089 0 0 0 4.784700126913393 4.784700126913393 4.784700126913393 9.208187539523749 0 2.9604093769761874 2 0.3494850021680094 0.75 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L} 8.3833;7.6563;7.6563;6.9327 +;-;-;- + 197 + NaN NaN 127036.3 NaN 10155 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13081 59.1 NaN 178390 35 0 24868 0.264 + 19079 NEPRRRRYNF 10 51 469.91585739911466 NaN 0 469.58233642578125 PEAK HCD FTMS 0 0 0 13074 17268.078125 0.38026580416512545 1 -0.032749176025390625 7 Unmodified _NEPRRRRYNF_ REV__ENSG00000065978|ENST00000321358|YBX1 1.9063754702782614 0.33855269584400594 1 N 1 -1 7.7423 0 0 0.82556 0 0 658.6951353531138 162.0561922662719 820.7513276193856 0 0 0 0 0 0 0 0 0.4247425010840047 N 0.82556 + + 12 + NaN NaN 124132.7 NaN 10156 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13082 59.103 NaN 125960 35 0 16652 0.261 + 6422 FPHPLPSL 8 48 454.25559065975 NaN 0 454.2552185058594 PEAK HCD FTMS 0 0 0 13074 75796.65625 1 0 0 8 Unmodified _FPHPLPSL_ ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-2|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;SF1-HRASLS2|1|fusion;SF1-HRASLS2|2|fusion 26.34127834903884 0.38080804198364926 1 SP 2 7 15.969 0 0 1.7616 0 0 131.09532912209391 588.2942442616848 719.3895733837787 0 0 0 0 0 0.5 0 0 0 SP 1.7616 - 10 + NaN NaN 96114.2 NaN 10157 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13083 59.107 NaN 121920 35 0 23986 0.261 -1 CLPRLPLHCL 10 48 407.89044189453125 NaN 0 407.89044189453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LPRLPLHCL_ ENST00000358654.2_2_22:24829272-24829671:+|nuORF 6.630372943996041 0.3345096087358732 1 W 1 -1 4.6041 0 0 0.56578 0 0 347.5282842755875 277.14191614322505 624.6702004188126 0 0 0 0 0 0 0 0 0 W 0.56578 - 1 + NaN NaN 104948.1 NaN 10158 2923 13074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13085 59.111 NaN 1241000 35 0 141960 0.327 + 4671 EYPDRIMNTF 10 88 643.2977950714372 1284.5810372096744 2 643.2979125976562 MULTI HCD FTMS 0 0 0 13084 679685.625 0.2183347487487126 10 -0.26183319091796875 1 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 132.13456570155267 1.54189796951664E-05 1 [YE]PDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 84.063 0 0 6.544 6.544 87.204 0 0 0 54.16895006820745 22.314309196763702 22.314309196763702 7.001962355242952 0 2.2346368802282015 1.6989700043360187 1.5044321917401078 0.9559771852360797 + + [YE]PDR{I|L}MNT{M(Oxidation (M))|F};[YE]P{[RE]|[WV]}VMNT{M(Oxidation (M))|F};[YE]PDR{I|L}MGGT{M(Oxidation (M))|F};[YE]P{[RE]|[WV]}VMGGT{M(Oxidation (M))|F};{[QS]|[NT]}{[RE]|[WV]}T[TA]MNT{M(Oxidation (M))|F};[YE]PD{[VA]|[{I|L}G]}V[HQ]{NN|[MP]|[D{I|L}]|[EV]};{[QS]|[NT]}{[RE]|[WV]}T[TA]MA[YQ];{[QS]|[NT]}{[RE]|[WV]}T{[RE]|[WV]}N{[YC]|[HE]};{[YC]|[HE]}N[R{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}H]|[RQ]}A{NN|[MP]|[D{I|L}]|[EV]} 6.544;5.999;5.3396;4.7945;4.1157;2.8493;1.8429;0.61116;0.52001 +;-;-;-;-;-;-;-;- + 522 + NaN NaN 267133.9 NaN 10159 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13086 59.116 NaN 426780 35 0 39434 0.261 + 34341 YPEEVSSMVL 10 70 585.2730142531003 1168.5314755730005 2 585.2738647460938 MULTI HCD FTMS 0 0 0 13084 172650.984375 0.7482626740771083 -5 0.14357376098632812 2 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 43.85829265575387 0.11192494793849486 1 [YT]{I|L}SS 5 7 55.758 0 0 4.7716 0 0 0 614.2456380108232 614.2456380108232 29.815534464597704 0 0 0 0 1 2 0.6549471895720984 0 [YT]{I|L}SS 4.7716 - 226 NaN NaN 143531.2 NaN 10160 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13087 59.119 NaN 436000 35 0 42306 0.261 + 6998 FPWGDGNHTL 10 88 572.2646368236018 1142.5147207140035 2 572.76611328125 MULTI HCD FTMS 0 0 0 13084 62802.23046875 0.5269345264627315 1 -0.02599334716796875 3 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 76.82478488871298 0.009498572185128612 1 {I|L}M{[DA]|[EG]}[WY]MT{I|L} 9 7 + 59.463 0 0 5.2046 5.2046 87.859 0 0 0 42.128618393527404 3.686989816163944 3.686989816163944 11.007112333562858 0 1.4634679910804405 2 1.1237125054200234 0 {I|L}M{[DA]|[EG]}[WY]MT{I|L};{I|L}M{[DA]|[EG]}[WY]{I|L}[MT];{[WS]|[C(Carbamidomethyl (C)){I|L}]}[HS][KS]WPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};[WP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}DGWPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT][VS]M{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[DA]|[EG]}M{I|L};[WP][DG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}WPE;{M(Oxidation (M))|F}PW[QT]{[CP]|[EA]}[HQ];{M(Oxidation (M))|F}P{[DA]|[EG]}[QP]G{M(Oxidation (M))|F}[HQ] 5.2046;4.2412;3.3682;3.303;3.2915;2.7911;2.7911;2.6871;2.6871;2.1859 -;-;-;-;-;-;-;-;-;- 900 + NaN NaN 154833.9 NaN 10161 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13088 59.123 NaN 535130 35 0 66903 0.261 + 7464 FVVEHDFIM 9 74 576.7734505099356 1151.5323480866712 2 576.7734375 MULTI HCD FTMS 0 0 0 13084 164191.03125 0.5072556562761303 -5 0.14357376098632812 4 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 74.42276476219924 0.007657080072768255 1 [{M(Oxidation (M))|F}V]VEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 [{M(Oxidation (M))|F}V] + + 53.95 3.7236 1.5128 4.6851 4.6851 61.055 0 0 0 0 49.345785441948216 0 0 0 1.805462187404089 0 0.4247425010840047 0 + + [{M(Oxidation (M))|F}V]VEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.6851 + + 219 + NaN NaN 161391.4 NaN 10162 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13089 59.126 NaN 237710 35 0 28900 0.261 + -1 LMYCMSLW 8 77 560.2356476327996 NaN 0 560.235595703125 PEAK HCD FTMS 0 0 0 13084 59058.21484375 0.7526738038463426 1 -0.02599334716796875 5 Carbamidomethyl (C),Oxidation (M) _LMYC(Carbamidomethyl (C))M(Oxidation (M))SLW_ REV__ENSG00000119686|ENST00000238667|FLVCR2 10.183394434864962 0.38822285293237185 1 {I|L}D 2 -1 10.005 0 0 0.89454 0 0 170.10801410731 717.2175387018186 887.3255528091286 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L}D 0.89454 - 53 + NaN NaN 119565.6 NaN 10163 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13090 59.129 NaN 503550 35 0 65043 0.261 + 27445 SYVQVTSNF 9 70 522.7535900616798 1043.4926271901595 2 522.7528076171875 MULTI HCD FTMS 0 0 0 13084 54965.24609375 0.1868562993018948 14 -0.353057861328125 6 Unmodified _SYVQVTSNF_ ENSG00000072364|ENST00000265343|AFF4 13.614867670302875 0.2427269026982664 1 {[{M(Oxidation (M))|F}D]|MM}QYVQ{M(Oxidation (M))|F} 7 7 40.489 0 0 3.8802 0 0 0 113.05288421053277 113.05288421053277 10.319524707318735 0 0 0 0 0.25 0 0.6747425010840047 0.3494850021680094 {[{M(Oxidation (M))|F}D]|MM}QYVQ{M(Oxidation (M))|F} 3.8802 - 754 NaN NaN 156937.8 NaN 10164 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13091 59.133 NaN 160660 35 0 16109 0.261 + 35039 YTILIKYGG 9 54 514.2947834545062 NaN 0 514.2946166992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YTILIKYGG_ ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 19.256988751693697 0.19238547928067054 1 {I|L}{I|L} 2 7 20.529 0 0 1.9997 0 0 264.1108298722764 533.2721041315061 797.3829340037826 0 0 0 0 0 1.305462187404089 0 0 0 + {I|L}{I|L} 1.9997 + + 18 + NaN NaN 102477 NaN 10165 2924 13084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13093 59.137 NaN 554270 35 0 85392 0.327 -1 0 88 582.3449039786885 1162.675255024177 2 582.3446655273438 MULTI HCD FTMS 0 0 0 13092 297964.5 0.061637578744665286 21 -0.5330734252929688 1 NaN NaN 1 AWV{I|L}DK{I|L} 7 -1 57.907 0 0 4.9805 0 0 319.1897145001969 0 319.1897145001969 0 39.23450630387195 0 0 0 1.9436726795685342 0 0 0 AWV{I|L}DK{I|L} 4.9805 - 781 NaN NaN 178422.8 NaN 10166 2925 13092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13094 59.142 NaN 477060 35 0 46816 0.261 + 16810 LYECTGQFDF 10 75 611.7580001998368 1221.5014474664736 2 611.757568359375 MULTI HCD FTMS 0 0 0 13092 234344.4375 0.6068171445772603 2 -0.05211639404296875 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 34.93206674587334 0.18938571726943593 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 62.598 0 0 5.1246 5.1246 84.151 0 0 0 6.859820497437283 41.561982404245526 6.859820497437283 5.611206103324733 0 2.3494850021680094 0 1.0228787452803376 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}E{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}E{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q[MT][TA]D{M(Oxidation (M))|F} 5.1246;4.6653;4.3744;4.3316;3.915;3.8012;3.5814;3.0509;2.1221;2.0428 -;-;-;-;-;-;-;-;-;- 416 NaN NaN 156210.7 NaN 10167 2925 13092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13095 59.145 NaN 298030 35 0 24527 0.261 + 35848 YYQNYFEKL 9 66 634.3036450504073 1266.5927371676146 2 634.3037109375 MULTI HCD FTMS 0 0 0 13092 154066.171875 0.07534849145828287 23 -0.5718498229980469 3 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 114.18643581695662 0.002258955990713129 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 102.56 0 0 8.0973 8.0973 91.57 0 0 0 1.6072813928388285 1.6072813928388285 1.6072813928388285 9.208187539523749 0 2.774227503252014 2 0.6747425010840047 0.4247425010840047 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L};YYN{M(Oxidation (M))|F}[SG]{M(Oxidation (M))|F}EK{I|L};YYN{M(Oxidation (M))|F}[YQ]EK{I|L} 8.0973;7.3703;7.3703;7.1989;6.6467;6.4719;5.8103;4.8998 +;-;-;-;-;-;-;- + 202 + NaN NaN 155353.6 NaN 10168 2925 13092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13096 59.149 NaN 297900 35 0 35561 0.261 + 31790 VYLTHLDYV 9 79 561.7960122506406 1121.5774715680811 2 561.7952270507812 MULTI HCD FTMS 0 0 0 13092 92460.0078125 0.7980619341399089 -4 0.10750961303710938 4 Unmodified _VYLTHLDYV_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF 26.88365393820708 0.12808753336095696 1 YV 2 7 25.969 0 0 2.3154 0 0 841.4337058042157 0 841.4337058042157 0 11.264100213633766 0 0 0 0.5 0 0 0 + YV 2.3154 + + 183 NaN NaN 151660.5 NaN 10169 2925 13092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13098 59.153 NaN 1103900 35 0 455990 0.327 -1 0 65 427.3026276036483 852.5907022740967 2 427.302490234375 MULTI HCD FTMS 0 0 0 13097 465063.78125 0.9038082702540828 1 -0.0360260009765625 1 NaN NaN 1 Y{M(Oxidation (M))|F} 2 -1 6.4537 0 0 0.75695 0 0 86.31410422897791 453.1527498834594 539.4668541124373 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 0.75695 - 39 + NaN NaN 259641.7 NaN 10170 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13099 59.158 NaN 721890 35 0 52086 0.261 + 589 APFKFDMEL 9 108 557.2677166492853 1112.5208803653704 2 557.267822265625 MULTI HCD FTMS 0 0 0 13097 356079.0625 0.5303486435640155 3 -0.08580780029296875 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 100.0907132914201 0.004261551473353346 1 [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 73.743 0 0 6.6285 6.6285 85.104 0 0 0 1.8223447444462835 1.8223447444462835 1.8223447444462835 1.8223447444462835 0 2.209508345908981 0 0.3054621874040891 0 + + [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[PA]{M(Oxidation (M))|F}[VG]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{I|L};{[ET]|[MV]}VN{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D[VP][QT]{M(Oxidation (M))|F};YYK{[{M(Oxidation (M))|F}D]|MM}PPA{I|L};{[ET]|[MV]}VGG{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};WP{I|L}{[HG]|PP}D{M(Oxidation (M))|F}E{I|L} 6.6285;6.4647;4.2385;3.7697;3.4276;2.7679;2.669;2.0431;1.9402;1.9212 +;+;-;-;-;-;-;-;-;- + 1375 NaN NaN 210623.5 NaN 10171 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13100 59.161 NaN 350380 35 0 70760 0.263 + 12647 KWFFQKLRF 9 64 433.91669708106457 1298.7282618433937 3 433.9166259765625 MULTI HCD FTMS 0 0 0 13097 113361.765625 0.1528622113282774 28 -0.7024803161621094 3 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 41.95555342248728 0.056367691549927025 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 61.068 0 0 4.7021 4.7021 83.079 0 0 0 41.37517525248825 14.973024840566467 14.973024840566467 4.771212547196626 0 0.7429928190999391 0 0 0.805462187404089 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}] 4.7021;4.3348;3.5201;3.2593;2.8919;2.0773 +;-;-;-;-;- + 173 + NaN NaN 152489.3 NaN 10172 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13101 59.165 NaN 398380 35 0 36178 0.261 + 26838 SYIHYVFRL 9 74 599.3251277374189 1196.6357025416378 2 599.3245849609375 MULTI HCD FTMS 0 0 0 13097 107505 0.43627412593088355 2 -0.048816680908203125 4 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 49.55428908609986 0.03219431099695407 1 [YV]THYV{M(Oxidation (M))|F}R{I|L} 9 2 + 66.264 0 0 5.5375 5.5375 85.717 0 0 0 60.690542212767795 2.9782844485415083 2.9782844485415083 7.786144654057665 0 2.079689690656103 1.154901959985743 0.3494850021680094 0 [YV]THYV{M(Oxidation (M))|F}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HYV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYHTM{I|L};{I|L}{[{M(Oxidation (M))|F}C]|[YS]}HYV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYH{I|L}[MT];{[WN]|[YH]}{[TV]|[{I|L}S]}YV{M(Oxidation (M))|F}R{I|L};[VS][WQ]YV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VY[WQ][PA];[YV][YV][HT]{M(Oxidation (M))|F}R{I|L} 5.5375;4.8868;4.8155;4.6982;3.8146;3.4428;3.2165;2.1443;2.1087 -;+;-;-;-;-;-;-;- + 230 + NaN NaN 144814.4 NaN 10173 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13102 59.168 NaN 433300 35 0 34104 0.262 -1 DQERLMRHRYL 11 73 511.5960816277284 1531.7664154833851 3 511.59613037109375 MULTI HCD FTMS 0 0 0 13097 116897.2734375 0.7415614149110885 1 -0.0360260009765625 5 Oxidation (M) _DQERLM(Oxidation (M))RHRYL_ ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2 1.214830529360525 0.41359283248740725 1 [{I|L}T]G{I|L}TEWW[QA]NT{I|L} 13 -1 + 50.565 0 0 3.3011 3.3011 88.942 0 0 0 0.28028723600243666 37.37784770266405 0.28028723600243666 50.56543532890817 0 0.7614393726401688 0 0.4247425010840047 0 [{I|L}T]G{I|L}TEWW[QA]NT{I|L} 3.3011 - 817 NaN NaN 150693.1 NaN 10174 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13103 59.171 NaN 391700 35 0 32021 0.261 + 6999 FPWGDGNHTL 10 80 572.2646368236018 1142.5147207140035 2 572.2639770507812 MULTI HCD FTMS 0 0 0 13097 109423.828125 0.5800164021702149 2 -0.048816680908203125 6 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 59.368380827593164 0.04371880213842136 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[DG][NG]HT{I|L} 10 0 + 47.355 0 0 4.1448 4.1448 60.273 0 0 0 3.516740735028847 3.516740735028847 3.516740735028847 0 0 1.3252574989159953 1.6989700043360187 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[DG][NG]HT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[HS][KS]WPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT][VS]M{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[DA]|[EG]}M{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[HS][{M(Oxidation (M))|F}E]HT{I|L};[YG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DV]WM{I|L} 4.1448;4.1448;3.837;3.706;3.706;1.5991;0.12015 +;-;-;-;-;-;- + 483 NaN NaN 146881.1 NaN 10175 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13104 59.175 NaN 476620 35 0 49631 0.261 -1 IPDEQIVVM 9 81 530.2731571092106 1058.5317612852211 2 530.2728271484375 MULTI HCD FTMS 0 0 0 13097 123210.7421875 0.7482671356339884 2 -0.048816680908203125 7 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 34.40172386719151 0.0910440009062557 1 {I|L}VV{M(Oxidation (M))|F} 4 -1 48.175 0 0 4.5511 0 0 582.2667713849625 0 582.2667713849625 0 33.571231544599485 0 0 0 1.774227503252014 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.5511 + + 400 NaN NaN 154321.5 NaN 10176 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13105 59.178 NaN 510210 35 0 35128 0.261 + 2222 DKDDELSF 8 89 484.71362577817285 967.4126986231457 2 484.7135314941406 MULTI HCD FTMS 0 0 0 13097 65789.6328125 0.4096439995384552 3 -0.08580780029296875 8 Unmodified _DKDDELSF_ ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 37.97399986684836 0.256956040331741 1 E{I|L}S{M(Oxidation (M))|F} 4 4 46.983 0 0 4.8565 0 0 473.1747053143551 0 473.1747053143551 0 27.316759732431702 0 0 0 1.3494850021680094 0 0.3054621874040891 0 + E{I|L}S{M(Oxidation (M))|F} 4.8565 + + 334 + NaN NaN 155750.6 NaN 10177 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13106 59.181 NaN 281050 35 0 39215 0.261 + 4368 EWLWQYRF 8 59 409.86957775862135 1226.586903876064 3 410.20355224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _EWLWQYRF_ VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant 3.944395688203298 0.5361403129012058 1 G{M(Oxidation (M))|F} 2 7 20.969 0 0 1.7095 0 0 1004.4865448446172 0 1004.4865448446172 0 13.521825181113625 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.7095 - 10 + NaN NaN 126194.9 NaN 10178 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13107 59.185 NaN 79554 35 0 4780.9 0.261 -1 SFLFMFALML 10 42 626.3108861777524 1250.6072194223048 2 626.310791015625 MULTI HCD FTMS 0 0 0 13097 40369.89453125 0.4677057570473607 -26 0.7195510864257812 10 2 Oxidation (M) _SFLFM(Oxidation (M))FALM(Oxidation (M))L_ ENSG00000132975|ENST00000405846|GPR12 1.6526216038709556 0.46655611578153744 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.2478 0 0 446.6830383693735 653.8706759088499 1100.5537142782234 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.2478 + + 3 + NaN NaN 105078.3 NaN 10179 2926 13097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13109 59.189 NaN 11368000 35 0 1227800 0.327 + 27048 SYMGHFDLL 9 128 549.749911500793 1097.485270068386 2 549.7501831054688 MULTI HCD FTMS 0 0 0 13108 9732064 0.928150538694763 -1 0.0360260009765625 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 196.64828556020333 2.142729284121474E-17 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 97.476 0 0 8.8817 8.8817 91.586 0 0 0 30.070844780971058 8.226825097560422 8.226825097560422 8.226825097560422 0 2.5356668758921828 2 1.8965912507003608 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[HG]|PP}{M(Oxidation (M))|F}YS{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT] 8.8817;8.1321;6.1417;3.9866;3.7459;3.6965;3.6175;3.307;3.1579;2.9874 +;-;+;-;-;-;-;-;-;- + 7523 + NaN NaN 1192955.5 NaN 10180 2927 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13110 59.194 NaN 246440 35 0 26768 0.261 + 1489 AYTPFHAVL 9 59 509.7715634460214 1017.5285739588428 2 509.7713623046875 MULTI HCD FTMS 0 0 0 13108 109614.5078125 0.05008336008128331 24 -0.5780715942382812 2 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 30.224811164608877 0.11021837014094292 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T 3 6 41.695 0 0 4.0976 0 0 0 679.3570963253585 679.3570963253585 30.039237471316298 0 0 0 0 0.9247425010840047 2 0.5 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T 4.0976 + + 141 + NaN NaN 120785.2 NaN 10181 2927 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13111 59.197 NaN 91211 35 0 10362 0.261 -1 SFFCDLPV 8 44 492.7295014174596 983.4444499017192 2 492.730224609375 MULTI HCD FTMS 0 0 0 13108 30833.208984375 0.19194424039478938 9 -0.22932815551757812 3 Carbamidomethyl (C) _SFFC(Carbamidomethyl (C))DLPV_ ENSG00000165762|ENST00000641885|OR4K2 5.230669730166228 0.5342319408533849 1 G 1 -1 9.6041 0 0 0.97658 0 0 599.2124380382411 324.19245325260005 923.4048912908411 0 0 0 0 0 0.5 0 0 0 G 0.97658 - 1 + NaN NaN 96364.5 NaN 10182 2927 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13113 59.202 NaN 3220200 35 0 355620 0.327 + 13290 KYMDVQFDF 9 106 604.7681727029972 1207.5217924727942 2 604.7684326171875 MULTI HCD FTMS 0 0 0 13112 2121887.5 0.5290813170285198 4 -0.12201690673828125 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 125.0377797344192 0.0009059125702818869 1 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 83.031 0 0 6.8761 6.8761 85.841 0 0 0 2.51393987558032 9.621440527729419 2.51393987558032 2.51393987558032 0 1.5 1.3979400086720375 0.7302046884880937 0.9916440611282626 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QKD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]Q{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.8761;6.6679;6.6596;6.4937;6.4435;6.2867;6.114;6.1136;5.9054;5.7311 -;+;-;-;-;-;-;-;-;- + 9060 NaN NaN 577630.9 NaN 10183 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13114 59.208 NaN 899460 35 0 117450 0.272 + 17024 LYIVHPTMF 9 97 568.7942097295122 1135.5738665258243 2 568.7942504882812 MULTI HCD FTMS 0 0 0 13112 280055.15625 0.5992106419712127 2 -0.0597991943359375 2 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 104.79918948944588 0.003791450360204016 1 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 104.72 0 0 9.2215 9.2215 97.953 0 0 0 76.79219922410468 16.478174818886373 16.478174818886373 48.51342204748164 0 2.805462187404089 1.6989700043360187 0.6307196863200843 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YVNRRN{[DS]|[MA]|[CV]|TT};{I|L}YVN{[NV]|[RG]}RG{[DS]|[MA]|[CV]|TT};{I|L}YVNRRGG{[DS]|[MA]|[CV]|TT} 9.2215;4.9493;1.9259;1.6205;1.6205 +;-;-;-;- + 1321 + NaN NaN 223618.8 NaN 10184 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13115 59.211 NaN 428170 35 0 48733 0.261 + 7737 FYMDTSHLF 9 85 588.7553249197848 1175.4960969063695 2 588.7549438476562 MULTI HCD FTMS 0 0 0 13112 195358.328125 0.5774701379414185 4 -0.12201690673828125 3 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 104.79918948944588 0.003791450360204016 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 76.041 0 0 6.4688 6.4688 91.134 0 0 0 62.764706236572465 16.478174818886373 16.478174818886373 15.484550065040281 0 2.548455006504028 0 0.8494850021680094 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT{[{M(Oxidation (M))|F}H]|[RQ]}{[TV]|[{I|L}S]};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];[Y{M(Oxidation (M))|F}]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{[WN]|[YH]}HH{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YQ][WM]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YE 6.4688;5.1516;3.41;3.1539;2.4167;1.0271;0.92084 +;+;-;-;-;-;- + 305 + NaN NaN 151982.9 NaN 10185 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13116 59.214 NaN 407540 35 0 64673 0.261 + 32977 YAQDEHLITF 10 82 618.7971639607945 1235.5797749883889 2 618.7974243164062 MULTI HCD FTMS 0 0 0 13112 140745.015625 0.6924081537022203 3 -0.09254837036132812 4 Unmodified _YAQDEHLITF_ ENSG00000144028|ENST00000323853|SNRNP200 40.23920728925047 0.14333095755487663 1 [DP]N{I|L}SNC{I|L}{I|L}T{M(Oxidation (M))|F} 11 7 + 70.125 0 0 5.6755 5.6755 86.541 0 0 0 4.86881092008818 55.203588965661254 4.86881092008818 9.128498242810991 0 1.6677353201839438 0 0.3494850021680094 0.5752574989159953 [DP]N{I|L}SNC{I|L}{I|L}T{M(Oxidation (M))|F};[DP]GG{I|L}SNC{I|L}{I|L}T{M(Oxidation (M))|F};YY{I|L}QTHHK{M(Oxidation (M))|F};YY{I|L}Q{I|L}{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};YY{I|L}SAAHHK{M(Oxidation (M))|F};[DP]N{I|L}SNC{I|L}T{I|L}{M(Oxidation (M))|F};YY{I|L}SNRHH{M(Oxidation (M))|F};YY{I|L}[AG]THHK{M(Oxidation (M))|F};[DP]N{I|L}[VG]N{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};[DP]N{I|L}Q{I|L}{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F} 5.6755;4.9367;4.9284;4.6022;4.5016;4.3376;4.1913;3.9359;3.8534;3.6547 -;-;-;-;-;-;-;-;-;- 1569 NaN NaN 144763 NaN 10186 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13117 59.218 NaN 386400 35 0 59312 0.261 + 12697 KWPDRITLL 9 76 571.3399074528259 1140.6652619724516 2 571.3402709960938 MULTI HCD FTMS 0 0 0 13112 93679.9921875 0.43879276212027957 -5 0.12364959716796875 5 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 11.494710602746466 0.2610445893512368 1 KW 2 7 24.776 0 0 2.1721 0 0 0 823.4688278675177 823.4688278675177 10.083559388717374 0 0 0 0 0.3807196863200844 0 0 0 + KW 2.1721 + + 115 + NaN NaN 161574.4 NaN 10187 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13118 59.221 NaN 121740 35 0 14226 0.263 + 27775 TAVGSGVVTL 10 43 452.2608697471866 902.5071865611732 2 452.2613525390625 MULTI HCD FTMS 0 0 0 13112 71601.03125 0.8628145719118211 2 -0.0597991943359375 6 Unmodified _TAVGSGVVTL_ ENSG00000144136|ENST00000272542|SLC20A1;ENSG00000168575|ENST00000520262|SLC20A2;SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant 51.629811660486645 0.07186226796122157 1 A[SG]RVT{I|L} 7 4 48.861 0 0 5.4139 0 0 200.11590773750157 0 200.11590773750157 0 41.87153533354774 0 0 0 1.9247425010840047 0 0.805462187404089 0 A[SG]RVT{I|L} 5.4139 - 122 NaN NaN 115397.8 NaN 10188 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13119 59.224 NaN 159200 35 0 45189 0.261 + 35103 YVDEGIQL 8 39 468.7373398899035 935.4601268466071 2 468.7372131347656 MULTI HCD FTMS 0 0 0 13112 79395.0859375 0.663178313290751 -3 0.06490707397460938 7 Unmodified _YVDEGIQL_ BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant 15.847184025352803 0.47719562709667024 1 {I|L}Q{I|L} 3 5 35.445 0 0 3.7891 0 0 563.2227650373062 0 563.2227650373062 0 19.960762528683702 0 0 0 0.9247425010840047 0 0 0 + {I|L}Q{I|L} 3.7891 + + 23 NaN NaN 106302.9 NaN 10189 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13120 59.228 NaN 382230 35 0 35404 0.261 + 24561 RYLNEFEEL 9 72 606.7981303841627 1211.5817078351254 2 607.8014526367188 MULTI HCD FTMS 0 0 0 13112 80557.734375 0.1505615202263159 11 -0.2983551025390625 8 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 26.268140514670165 0.13340543277302316 1 EE{[WT]|[RM]}{M(Oxidation (M))|F}E{[QN]|[E{I|L}]|[KN]} 8 5 39.372 0 0 3.2496 0 0 130.09398693199483 0 130.09398693199483 0 32.382287586051106 0 0 0 1.1747425010840047 0 1.6989700043360187 0 EE{[WT]|[RM]}{M(Oxidation (M))|F}E{[QN]|[E{I|L}]|[KN]} 3.2496 - 513 + NaN NaN 142115.1 NaN 10190 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13121 59.231 NaN 277260 35 0 36675 0.262 -1 YMGHFDLL 8 62 506.2339397312328 1010.4533265292656 2 506.2333984375 MULTI HCD FTMS 0 0 0 13112 70363.2265625 0.4725670582437712 28 -0.7093086242675781 9 Oxidation (M) _YM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 8.593279151180031 0.5292430274356741 1 NY{I|L} 3 -1 26.972 0 0 2.6693 0 0 602.2499256818375 0 602.2499256818375 0 11.48784731777237 0 0 0 0.5 0 0 0 NY{I|L} 2.6693 - 94 NaN NaN 123625.7 NaN 10191 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13122 59.234 NaN 115600 35 0 8836.8 0.262 + 21643 PYRLIFEKF 9 55 404.8973420405621 1211.6701967218862 3 404.8973083496094 MULTI HCD FTMS 0 0 0 13112 46721.0234375 0.08894040604584486 26 -0.6536636352539062 10 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 8.97624648632007 0.2828035605319045 1 KG{M(Oxidation (M))|F} 3 8 20.177 0 0 1.6652 0 0 861.4757614931694 0 861.4757614931694 0 6.9897000433601875 0 0 0 0 0 0 0 KG{M(Oxidation (M))|F} 1.6652 - 19 + NaN NaN 96263.8 NaN 10192 2928 13112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13124 59.239 NaN 820610 35 0 166770 0.327 + 9449 HPVSLEQYL 9 88 543.285254830603 1084.5559567280059 2 543.2852172851562 MULTI HCD FTMS 0 0 0 13123 374060.59375 0.6618356106971315 3 -0.08502578735351562 1 Unmodified _HPVSLEQYL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 65.23502041540118 0.010630085227462206 1 [Y{I|L}]N[KQ]SGY{I|L} 9 7 + 51.524 0 0 4.7507 4.7507 83.434 0 0 0 5.457574905606748 1.935749724493121 1.935749724493121 5.440680443502757 0 0.5 1.6989700043360187 0.75 0.3494850021680094 [Y{I|L}]N[KQ]SGY{I|L};[Y{I|L}]Q{[QN]|[E{I|L}]|[KN]}SGY{I|L};{[QN]|[E{I|L}]|[KN]}YA[VS]QY{I|L};{[QN]|[E{I|L}]|[KN]}YA[VS]AGY{I|L};[Y{I|L}]GG[KQ]SGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[VS]QY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[VS]AGY{I|L};[YN]{I|L}[KQ]SGY{I|L};[Y{I|L}][AG]{[QN]|[E{I|L}]|[KN]}SGY{I|L};[Y{I|L}]EA[VS]AHPV 4.7507;4.2491;4.2475;4.1323;3.9017;3.7547;3.6395;3.4201;3.4;3.0049 -;-;-;-;-;-;-;-;-;- 899 NaN NaN 222394.2 NaN 10193 2929 13123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13125 59.244 NaN 845080 35 0 117600 0.261 -1 0 104 617.3170389703915 1232.619525007583 2 617.3167114257812 MULTI HCD FTMS 0 0 0 13123 523335.375 0.2347046684930954 -9 0.24542999267578125 2 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 10 -1 93.955 0 0 7.6224 0 0 0 144.04550864557328 144.04550864557328 65.67936196270514 0 0 0 0 2.309894379144197 1.5228787452803376 0.9163865622122673 1.8539171939081172 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 7.6224 - 2131 NaN NaN 212890 NaN 10194 2929 13123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13126 59.247 NaN 415460 35 0 33796 0.261 + 1733 CIYTFCICQF 10 59 620.7636936554854 1239.5128343777708 2 620.7636108398438 MULTI HCD FTMS 0 0 0 13123 132117.890625 0.5632012252550461 6 -0.16003799438476562 3 Unmodified _CIYTFCICQF_ REV__ENST00000467114.2_1_2:153535806-153549567:-|nuORF 13.90604991867851 0.3810395177745597 1 Q{I|L}CSSK{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 51.112 0 0 4.1236 0 0 166.05775289212244 0 166.05775289212244 0 16.18562527100117 0 0 0 1.1237125054200234 0 0.7302046884880937 0 Q{I|L}CSSK{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1236 - 573 + NaN NaN 143860.4 NaN 10195 2929 13123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13127 59.251 NaN 253230 35 0 68221 0.263 + 462 ALPSKLPTF 9 63 487.28933754837425 972.5641221635485 2 487.2895202636719 MULTI HCD FTMS 0 0 0 13123 82345.21875 0.1545913516510942 12 -0.3103294372558594 4 Unmodified _ALPSKLPTF_ ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.7469 0 0 807.4851254367892 0 807.4851254367892 0 9.030899869919438 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7469 + + 57 + NaN NaN 131495.2 NaN 10196 2929 13123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13128 59.254 NaN 154730 35 0 8900.6 0.261 + 13405 KYPDVIQEL 9 71 552.8003660933904 NaN 0 552.8004150390625 PEAK HCD FTMS 0 0 0 13123 17476.5078125 0.21908347410086373 5 -0.133941650390625 5 Unmodified _KYPDVIQEL_ ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 24.881564428377168 0.15463211837067886 1 EQ{I|L}{M(Oxidation (M))|F} 4 8 22.652 0 0 2.0525 0 0 131.0965685131494 452.2034090631469 583.2999775762963 0 0 0 0 0 1 0 0 0 EQ{I|L}{M(Oxidation (M))|F} 2.0525 - 65 + NaN NaN 104990.9 NaN 10197 2929 13123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13129 59.257 NaN 95768 35 0 8138.5 0.262 + 6423 FPHPLPSL 8 48 454.25559065975 NaN 0 454.2560119628906 PEAK HCD FTMS 0 0 0 13123 23414.900390625 0.3089173262920157 6 -0.16003799438476562 6 Unmodified _FPHPLPSL_ ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-2|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;SF1-HRASLS2|1|fusion;SF1-HRASLS2|2|fusion 14.581692164780916 0.38795613832665576 1 SP 2 7 15.969 0 0 1.7616 0 0 131.086668524775 588.2932216699968 719.3798901947719 0 0 0 0 0 0.5 0 0 0 SP 1.7616 - 4 + NaN NaN 107509.5 NaN 10198 2929 13123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13131 59.262 NaN 767970 35 0 89453 0.327 + 4672 EYPDRIMNTF 10 77 643.2977950714372 1284.5810372096744 2 643.297607421875 MULTI HCD FTMS 0 0 0 13130 379193.125 0.1218078367835338 16 -0.4083671569824219 1 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 117.83759599426817 4.151732338833739E-05 1 [YE][DP]R{I|L}MNT{M(Oxidation (M))|F} 10 0 + 67.06 0 0 5.2204 5.2204 89.02 0 0 0 14.85354666808 15.680478311226146 14.85354666808 15.680478311226146 0 2.1479400086720375 1.6989700043360187 1.5941876774005248 0.6505149978319906 + + [YE][DP]R{I|L}MNT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MNT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]NP[NS]{I|L}MNT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MGGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]NP[NS]{I|L}MGGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]GGP[NS]{I|L}MNT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MA[SG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]NP[NS]{I|L}MA[SG]{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G;[{M(Oxidation (M))|F}T]NP[NS]{I|L}MA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G 5.2204;3.9997;3.7133;3.2891;3.0026;3.0026;2.4938;2.2073;2.1045;1.8181 +;-;-;-;-;-;-;-;-;- + 432 + NaN NaN 221752.6 NaN 10199 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13132 59.266 NaN 849360 35 0 115900 0.261 + 7465 FVVEHDFIM 9 87 576.7734505099356 1151.5323480866712 2 576.773681640625 MULTI HCD FTMS 0 0 0 13130 284111.1875 0.8777398239936034 1 -0.032749176025390625 2 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 109.62928328672726 0.0030029239606406397 1 [{M(Oxidation (M))|F}V]VEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 [{M(Oxidation (M))|F}V] + + 63.905 3.7236 1.5128 5.5496 5.5496 62.528 0 0 0 0 53.983784040299824 0 0 0 2.504432191740108 0 0.7134679910804405 0 + + [{M(Oxidation (M))|F}V]VEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.5496 + + 414 + NaN NaN 223167.8 NaN 10200 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13133 59.27 NaN 761800 35 0 91777 0.261 + 18340 MPHDLITQL 9 91 534.2810736717572 1066.5475944103143 2 534.2811279296875 MULTI HCD FTMS 0 0 0 13130 244538.734375 0.7028060006748528 -3 0.07258987426757812 3 Unmodified _MPHDLITQL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 36.12702656103203 0.08312389501731911 1 {M(Oxidation (M))|F}TTQ{I|L} 5 5 38.561 0 0 3.6155 0 0 458.21919448066564 0 458.21919448066564 0 4.102401045975817 0 0 0 0.7887254899964358 0 0.6861818737241735 0 {M(Oxidation (M))|F}TTQ{I|L} 3.6155 - 1237 NaN NaN 198926.5 NaN 10201 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13134 59.273 NaN 638990 35 0 69808 0.261 + 18844 NAELWQVSW 9 89 566.7748582236685 1131.535163514137 2 566.7744140625 MULTI HCD FTMS 0 0 0 13130 267395.75 0.8462017183998694 24 -0.5938644409179688 4 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 39.94969957227396 0.06557568441294001 1 SV[YT]SVSW 8 6 57.384 0 0 5.0713 0 0 204.08996779609532 0 204.08996779609532 0 36.414412723804546 0 0 0 0.3252574989159953 0 1.4489700043360187 0 SV[YT]SVSW 5.0713 - 1699 NaN NaN 176290.9 NaN 10202 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13135 59.277 NaN 323550 35 0 36342 0.261 -1 YPEEVSSMVL 10 65 585.2730142531003 1168.5314755730005 2 585.2738647460938 MULTI HCD FTMS 0 0 0 13130 168605.828125 0.7307311236857685 1 -0.032749176025390625 5 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 36.12702656103203 0.1790159924230938 1 [YT]{I|L}SS 5 -1 56.198 0 0 4.8093 0 0 0 614.2468350216649 614.2468350216649 30.981362441963327 0 0 0 0 1 2 0.6989700043360187 0 [YT]{I|L}SS 4.8093 - 178 NaN NaN 140201.5 NaN 10203 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13136 59.28 NaN 213550 35 0 31307 0.261 + 33350 YGEYRMETF 9 64 598.2567861945921 NaN 0 598.244140625 PEAK HCD FTMS 0 0 0 13130 30456.94921875 1 0 0 6 Unmodified _YGEYRMETF_ REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1 13.90604991867851 0.22786006501039813 1 SPSV{M(Oxidation (M))|F}YP 7 -1 15.767 0 0 1.32 0 0 165.07536760974114 249.0541933649047 414.12956097464587 0 0 0 0 0 0.18223330692836548 0 0 0 SPSV{M(Oxidation (M))|F}YP 1.32 - 58 + NaN NaN 131270.5 NaN 10204 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13137 59.283 NaN 286870 35 0 41861 0.261 + 31472 VYEKNGYIYF 10 54 648.3189699847376 1294.623387036275 2 648.318603515625 MULTI HCD FTMS 0 0 0 13130 122245.6484375 0.7389207991131124 -3 0.07258987426757812 7 Unmodified _VYEKNGYIYF_ chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13 45.739877483867886 0.09559676962230333 1 VYE[KG]NY{I|L}Y{M(Oxidation (M))|F} 10 2 + 64.882 0 0 5.0117 5.0117 91.508 0 0 0 43.913187455970544 11.517412290202671 11.517412290202671 64.8822875860511 0 2.1237125054200234 1.6989700043360187 0 0 VYE[KG]NY{I|L}Y{M(Oxidation (M))|F} 5.0117 - 89 + NaN NaN 147332.6 NaN 10205 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13138 59.287 NaN 223050 35 0 16595 0.261 + 19856 NYAWVYYHM 9 59 631.7688949312696 1261.5232369293392 2 631.7689819335938 MULTI HCD FTMS 0 0 0 13130 46614.5234375 0.16199551545156843 20 -0.4893608093261719 8 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 77.98433622928108 0.006504613272346738 1 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 80.512 0 0 6.3821 6.3821 87.288 0 0 0 8.56085855320815 8.56085855320815 8.56085855320815 8.010299956639813 0 2.579689690656103 1.6989700043360187 0 0.7302046884880937 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]WTY[Y{I|L}][HC];[YN]AWY[WE][KC];[WY]NAYVYH{M(Oxidation (M))|F};[WY]{[QG]|[NA]}YTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]NAY[WE][KC] 6.3821;5.7471;4.8812;3.2552;2.683;2.33;2.0481;0.65626 -;-;-;-;-;-;-;- 351 NaN NaN 117642.3 NaN 10206 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13139 59.29 NaN 357380 35 0 36040 0.261 + 12698 KWPDRITLL 9 91 571.3399074528259 1140.6652619724516 2 572.343994140625 MULTI HCD FTMS 0 0 0 13130 51738.21875 1 0 0 9 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 6.2057823575117 0.30397260197431997 1 [WK]C[HS]AWP 8 7 17.092 0 0 1.4984 0 0 0 142.1915872639768 142.1915872639768 2.4435039655561823 0 0 0 0 0.4247425010840047 0 0.7302046884880937 1.1307196863200843 [WK]C[HS]AWP 1.4984 - 184 NaN NaN 135762.7 NaN 10207 2930 13130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13141 59.295 NaN 2631100 35 0 811160 0.327 + 31996 VYPLMKEYF 9 86 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 13140 1454089.625 0.34651716310015085 21 -0.5088310241699219 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 96.36657018975838 0.004359138328518304 1 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 95.174 0 0 7.9009 7.9009 87.282 0 0 0 1.8700177716519448 1.8700177716519448 1.8700177716519448 1.8700177716519448 0 3.004432191740108 2 0.6747425010840047 0 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F} 7.9009;7.7457;7.2414;5.9272;5.8902;5.7817;5.7192;5.7079;5.6991;5.6366 +;+;-;-;-;-;-;-;-;- + 2220 + NaN NaN 481216.8 NaN 10208 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13142 59.299 NaN 1749200 35 0 261160 0.261 + 10556 IPILYEHQL 9 91 563.3188360138137 1124.6231190944272 2 563.31884765625 MULTI HCD FTMS 0 0 0 13140 832761 0.7549016686143295 -2 0.0555572509765625 2 Unmodified _IPILYEHQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 183.0388951392065 8.687204194748383E-13 1 {I|L}P{I|L}{I|L}YEHQ{I|L} 9 0 + 136.03 0 0 12.096 12.096 96.955 0 0 0 102.48294553609423 29.881266417438866 29.881266417438866 16.68575633547141 0 3.1237125054200234 1.6989700043360187 1.8098943791441968 2.162437995416459 + + {I|L}P{I|L}{I|L}YEHQ{I|L};{I|L}{I|L}P{I|L}YEHQ{I|L};[{I|L}P]{I|L}{I|L}YEHQ{I|L};{I|L}P{I|L}WEN{I|L}Q{I|L};{I|L}PWE{I|L}N{I|L}Q{I|L};[{I|L}P]{I|L}Y{I|L}EHQ{I|L};[{I|L}P]{I|L}{I|L}YEH[AG]{I|L};{I|L}PW{I|L}EN{I|L}Q{I|L};[{I|L}P]{I|L}Y{I|L}EH[AG]{I|L};[{I|L}P]{I|L}YE{I|L}HQ{I|L} 12.096;10.612;8.291;7.9828;7.7617;7.6898;7.4722;6.8929;6.871;6.8209 +;-;+;-;-;-;-;-;-;- + 1356 + NaN NaN 356715.8 NaN 10209 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13143 59.303 NaN 709760 35 0 284520 0.263 -1 0 71 427.3026276036483 852.5907022740967 2 427.3026123046875 MULTI HCD FTMS 0 0 0 13140 285164.5625 0.5541908451312824 6 -0.15008926391601562 3 NaN NaN 1 Y{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{M(Oxidation (M))|F} 6 -1 18.064 0 0 2.1188 0 0 86.31874290085291 0 86.31874290085291 0 4.084938383626525 0 0 0 0 0 0.2614393726401688 0 Y{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{M(Oxidation (M))|F} 2.1188 - 35 + NaN NaN 190667.1 NaN 10210 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13144 59.306 NaN 796130 35 0 64980 0.261 -1 EYMEHVYLI 9 91 606.7838077584753 1211.5530625837505 2 606.7984008789062 MULTI HCD FTMS 0 0 0 13140 86694.1015625 0.1199916596143414 27 -0.6791725158691406 4 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 24.67388899826682 0.14717941214954053 1 {I|L}NE{M(Oxidation (M))|F}EE{I|L} 7 -1 48.096 0 0 3.9698 0 0 319.1639576642594 0 319.1639576642594 0 23.526209134693076 0 0 0 0 0 0 0.7134679910804405 {I|L}NE{M(Oxidation (M))|F}EE{I|L} 3.9698 - 3592 NaN NaN 208902.8 NaN 10211 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13145 59.309 NaN 534220 35 0 72918 0.261 + 14472 LEWIFSKIK 9 90 582.3449039786885 1162.675255024177 2 582.344970703125 MULTI HCD FTMS 0 0 0 13140 211061.671875 0.04366067239612779 27 -0.6791725158691406 5 Unmodified _LEWIFSKIK_ REV__ENSG00000124177|ENST00000373233|CHD6;REV__nc|ENSG00000124177|Q8TD26-3|CHD6 18.1463463914782 0.20357593197100715 1 WV{I|L}DK{I|L} 6 -1 46.732 0 0 4.0193 0 0 390.2252674787125 0 390.2252674787125 0 23.433429542953252 0 0 0 1.274227503252014 0 0 0 WV{I|L}DK{I|L} 4.0193 - 473 NaN NaN 167618.9 NaN 10212 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13146 59.313 NaN 332020 35 0 31820 0.261 + 16811 LYECTGQFDF 10 68 611.7580001998368 1221.5014474664736 2 611.7579956054688 MULTI HCD FTMS 0 0 0 13140 192248.828125 0.4978137572868014 8 -0.20580673217773438 6 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 28.494509381512117 0.24525010509582015 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 63.454 0 0 5.1947 5.1947 85.846 0 0 0 0.7581117311082863 43.53199407328319 0.7581117311082863 9.164539485499255 0 2.3494850021680094 0 0.2614393726401688 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}QH{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[WT]|[RM]} 5.1947;4.4444;4.1316;3.3778;1.2047;0.73937;0.68723 -;-;-;-;-;-;- 227 NaN NaN 149111.6 NaN 10213 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13147 59.316 NaN 310160 35 0 24092 0.262 + 8924 HPDLLIKVL 9 64 524.331695518682 1046.6488381041638 2 524.3317260742188 MULTI HCD FTMS 0 0 0 13140 119778.390625 0.7401444793423699 1 -0.029468536376953125 7 Unmodified _HPDLLIKVL_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 51.629811660486645 0.02929079705179888 1 {I|L}KV{I|L} 4 5 35.918 0 0 3.4317 0 0 575.3079701154312 0 575.3079701154312 0 14.006375246153908 0 0 0 0.8494850021680094 0 0 0 + {I|L}KV{I|L} 3.4317 + + 121 NaN NaN 126030.3 NaN 10214 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13148 59.319 NaN 355410 35 0 38448 0.261 + 1274 AYMAYMICQF 10 73 620.7636936554854 1239.5128343777708 2 620.2763061523438 MULTI HCD FTMS 0 0 0 13140 30157.076171875 0.4394864513796138 10 -0.2547721862792969 8 Unmodified _AYMAYMICQF_ ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 10.073929032068715 0.4168838835836452 1 Q{I|L}CSSK{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 9 47.793 0 0 3.8558 0 0 166.05429053187078 0 166.05429053187078 0 21.189236252610172 0 0 0 0.9361818737241735 0 1.2134679910804405 0 Q{I|L}CSSK{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.8558 - 778 + NaN NaN 151623.3 NaN 10215 2931 13140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13150 59.324 NaN 1073000 35 0 77846 0.327 + 590 APFKFDMEL 9 105 557.2678406421421 1112.5211283510841 2 557.2677612304688 MULTI HCD FTMS 0 0 0 13149 525866.25 0.7274936027658013 -2 0.06221771240234375 1 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 157.7952019732125 5.857147217999733E-07 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 98.042 0 0 8.8126 8.8126 94.392 0 0 0 12.465069174761922 12.465069174761922 12.465069174761922 12.465069174761922 0 3.110924374808178 0 2.3723637474483468 0.23965182871044374 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AP{M(Oxidation (M))|F}Y{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}E{I|L};{I|L}WP{[HG]|PP}D{M(Oxidation (M))|F}E{I|L};WEY{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}E{I|L};{[ET]|[MV]}{[NV]|[RG]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 8.8126;7.6921;7.6124;6.9721;6.3983;6.064;5.6384;3.7709;3.5204;3.5061 +;-;+;-;-;-;-;-;-;- + 3014 + NaN NaN 249738.9 NaN 10216 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13151 59.329 NaN 1406600 35 0 139590 0.261 + 32239 VYTTTVHWL 9 107 560.2953654435589 1118.5761779539177 2 560.2960815429688 MULTI HCD FTMS 0 0 0 13149 508135.125 0.4942781302943474 -3 0.08502578735351562 2 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 162.95088124538222 7.661836540310252E-09 1 VYTTTVHW{I|L} 9 0 + 92.409 0 0 8.2613 8.2613 93.131 0 0 0 69.96019365593502 7.705627374200603 7.705627374200603 10.884723671972722 0 2.4071406706489746 1.6989700043360187 0.8494850021680094 0 + + VYTTTVHW{I|L};[YV]TTTVHW{I|L};VYTT[HV]TW{I|L};VYTNV[QP]W{I|L};[YV]TT[YR]{[MS]|[{M(Oxidation (M))|F}A]}V;[YT]VTTVHW{I|L};VYTT[HV]{I|L}{[WT]|[RM]};VY[{M(Oxidation (M))|F}V]GVHGE{I|L};[YV][PS]VTH{[MS]|[{M(Oxidation (M))|F}A]}V;[YV][YK]{[RE]|[WV]}YV 8.2613;7.2882;5.8291;5.1706;4.5715;4.515;4.4728;3.8562;3.6752;3.6551 +;+;-;-;-;-;-;-;-;- + 6774 + NaN NaN 297672.6 NaN 10217 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13152 59.332 NaN 204280 35 0 18163 0.261 + 35849 YYQNYFEKL 9 62 634.3036450504073 1266.5927371676146 2 634.3032836914062 MULTI HCD FTMS 0 0 0 13149 116579.75 0.05701516556282484 30 -0.754913330078125 3 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 91.08480475639789 0.0044975408722150376 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 101.84 0 0 8.0403 8.0403 87.525 0 0 0 4.163865622122671 4.163865622122671 4.163865622122671 1.9188552623891297 0 2.774227503252014 2 0.3494850021680094 1.1549471895720984 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L} 8.0403;7.8888;7.3133;6.261 +;-;-;- + 255 NaN NaN 117789 NaN 10218 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13153 59.336 NaN 347040 35 0 62603 0.264 + 12648 KWFFQKLRF 9 80 433.91669708106457 1298.7282618433937 3 433.9165344238281 MULTI HCD FTMS 0 0 0 13149 129972.2421875 0.1752605408228942 34 -0.8730583190917969 4 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 40.23920728925047 0.06424668180817725 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 74.646 0 0 5.7476 5.7476 87.558 0 0 0 62.17207215904928 12.98332479720628 12.98332479720628 9.208187539523749 0 0.8494850021680094 0 0 0.8807196863200843 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[R{I|L}]QK{M(Oxidation (M))|F};{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 5.7476;5.0386;4.5533;3.8613;3.8443;3.1523;2.9181;2.667;1.9579 +;-;-;-;-;-;-;-;- + 265 + NaN NaN 144797 NaN 10219 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13154 59.339 NaN 325240 35 0 33606 0.261 -1 IPDEQIVVM 9 76 530.2731571092106 1058.5317612852211 2 530.2728881835938 MULTI HCD FTMS 0 0 0 13149 78531.40625 0.476926519301157 8 -0.19915008544921875 5 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 17.11289562659939 0.2125047172822487 1 Q{I|L}VV{M(Oxidation (M))|F} 5 -1 47.959 0 0 4.5307 0 0 454.19221694160314 0 454.19221694160314 0 33.979400086720375 0 0 0 1.5 0 0 0 Q{I|L}VV{M(Oxidation (M))|F} 4.5307 + + 193 NaN NaN 130206.6 NaN 10220 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13155 59.342 NaN 598740 35 0 137090 0.261 + 27410 SYTSGLETL 9 66 485.7401172817481 969.4656816302962 2 485.7400207519531 MULTI HCD FTMS 0 0 0 13149 128371.640625 0.12141297724706189 -7 0.18692398071289062 6 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 115.6920309560759 0.002013163348980568 1 {[{M(Oxidation (M))|F}C]|[YS]}TS{[VA]|[{I|L}G]}ET{I|L} 9 0 + 66.436 0 0 6.8528 6.8528 94.749 0 0 0 4.4171776986915745 51.02954353761518 4.4171776986915745 66.43561866002287 0 2.1861818737241734 0 1.524227503252014 0 + + {[{M(Oxidation (M))|F}C]|[YS]}TS{[VA]|[{I|L}G]}ET{I|L} 6.8528 + + 302 NaN NaN 172805.6 NaN 10221 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13156 59.346 NaN 246710 35 0 12393 0.261 + 26839 SYIHYVFRL 9 63 599.3251277374189 1196.6357025416378 2 599.3251342773438 MULTI HCD FTMS 0 0 0 13149 36018.29296875 0.14616854362554202 8 -0.19915008544921875 7 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 32.78568957990786 0.09846250359632436 1 [YV]THYV 6 5 55.763 0 0 4.66 0 0 0 431.2418612115844 431.2418612115844 20.934406614145466 0 0 0 0 0.7614393726401688 1.6989700043360187 0.4247425010840047 0 [YV]THYV 4.66 - 197 + NaN NaN 122250.7 NaN 10222 2932 13149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13158 59.35 NaN 5943200 35 0 695130 0.327 + 27049 SYMGHFDLL 9 114 549.749911500793 1097.485270068386 2 549.750244140625 MULTI HCD FTMS 0 0 0 13157 4723916.5 0.45052166161505713 5 -0.11400222778320312 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 180.00974506902125 1.0762292318080308E-12 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 97.34 0 0 8.8694 8.8694 91.843 0 0 0 31.83684181761265 9.018637558036673 9.018637558036673 9.018637558036673 0 2.579689690656103 2 2.0431576817365436 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}YS{I|L} 8.8694;8.0476;5.9685;3.5192;3.4676;3.2212;3.2045;3.1205;2.9469;2.8592 +;-;+;-;-;-;-;-;-;- + 2656 + NaN NaN 620204.1 NaN 10223 2933 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13159 59.355 NaN 675740 35 0 138440 0.261 + 19358 NPDPAVYQL 9 64 508.755906186611 1015.497259440022 2 508.7559509277344 MULTI HCD FTMS 0 0 0 13157 350524.96875 0.6385746657855389 -5 0.14815521240234375 2 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 74.19965305603844 0.007729275404663812 1 [NP]D[PA]VYQ{I|L} 9 0 + 63.209 0 0 6.2244 6.2244 87.201 0 0 0 8.792484015650075 15.440228147639203 8.792484015650075 8.507112333562858 0 2.2302046884880937 0 0.3252574989159953 1.2302046884880937 + + [NP]D[PA]VYQ{I|L};[NP]A[DP]VYQ{I|L};{[QN]|[E{I|L}]|[KN]}[HD]VYQ{I|L};[NP]D[PA]VY[AG]{I|L};[NP]A[DP]VY[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[HD]VY[AG]{I|L};[NP]D[PA]VYGA{I|L};[VP][EP][NG]YQ{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[WE]VVQ{I|L} 6.2244;5.3867;5.3586;5.3177;4.4799;4.4465;3.8619;3.063;0.84867 +;-;-;-;-;-;-;-;- + 318 NaN NaN 209208.4 NaN 10224 2933 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13160 59.358 NaN 154950 35 0 29511 0.261 + 31291 VWFPGGAF 8 52 440.7212878422356 879.4280227512712 2 440.72137451171875 MULTI HCD FTMS 0 0 0 13157 94729.5078125 0.08135053741613876 35 -0.9026374816894531 3 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.5120171699125776 1 WV 2 7 40.445 0 0 4.599 0 0 0 591.2572385581369 591.2572385581369 23.455612550363796 0 0 0 0 0.4247425010840047 2 0 0 WV 4.599 - 13 + NaN NaN 112061 NaN 10225 2933 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13161 59.362 NaN 399190 35 0 64749 0.261 + 4372 EWPKHWPTF 9 47 409.86957775862135 1226.586903876064 3 409.869873046875 MULTI HCD FTMS 0 0 0 13157 119410.28125 0.8571416714707749 5 -0.11400222778320312 4 Unmodified _EWPKHWPTF_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF 4.189502756095605 0.319257502753388 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3851 0 0 1061.5078918905156 0 1061.5078918905156 0 9.54242509439325 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3851 + + 14 + NaN NaN 150971.4 NaN 10226 2933 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13162 59.365 NaN 335220 35 0 37519 0.261 + 35714 YYLKRFFEV 9 90 422.22885668541073 1263.6647406564323 3 422.22894287109375 MULTI HCD FTMS 0 0 0 13157 89829.296875 0.9479548417287279 -2 0.055606842041015625 5 Unmodified _YYLKRFFEV_ ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF 19.256988751693697 0.19398022840297344 1 YY 2 7 42.206 0 0 3.34 0 0 0 934.516428653214 934.516428653214 25.21652514092061 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.34 + + 73 + NaN NaN 147447.8 NaN 10227 2933 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13163 59.368 NaN 211220 35 0 27404 0.261 -1 CMGVDCTEIF 10 66 595.7283879899645 1189.442223046729 2 595.7283325195312 MULTI HCD FTMS 0 0 0 13157 55820.3515625 0.6317468437879037 -2 0.055606842041015625 6 Carbamidomethyl (C),Oxidation (M) _CM(Oxidation (M))GVDC(Carbamidomethyl (C))TEIF_ ENSG00000006194|ENST00000219069|ZNF263 6.723162845929126 0.4397169348982109 1 DPY{M(Oxidation (M))|F} 4 -1 37.964 0 0 3.1917 0 0 649.220460492159 0 649.220460492159 0 34.86494082808356 0 0 0 1 0 0.3807196863200844 0 DPY{M(Oxidation (M))|F} 3.1917 - 38 NaN NaN 122972.2 NaN 10228 2933 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13165 59.373 NaN 439690 35 0 89349 0.327 + 12699 KWPDRITLL 9 74 571.3399074528259 1140.6652619724516 2 571.3399658203125 MULTI HCD FTMS 0 0 0 13164 156167.1875 0.7314799025444848 1 -0.026096343994140625 1 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 17.44264345198275 0.2096557692338702 1 KW 2 7 24.776 0 0 2.1721 0 0 0 823.468900126395 823.468900126395 10.122796860033674 0 0 0 0 0.3807196863200844 0 0 0 + KW 2.1721 + + 114 + NaN NaN 145260.9 NaN 10229 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13166 59.378 NaN 615600 35 0 77206 0.261 + 31619 VYINTAQEF 9 88 542.7689631041696 1083.5233732751392 2 543.2853393554688 MULTI HCD FTMS 0 0 0 13164 24177.505859375 0.24579751573583605 -4 0.11113357543945312 2 Unmodified _VYINTAQEF_ ENSG00000095059|ENST00000210060|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS 71.70789743142352 0.008535567138151097 1 [Y{I|L}]VNTAEQ{M(Oxidation (M))|F} 9 4 + 76.754 0 0 7.0838 7.0838 86.521 0 0 0 18.383090205695183 54.57039304039391 18.383090205695183 3.133345013315264 0 2.1989700043360187 1.5228787452803376 0.6505149978319906 0 [Y{I|L}]VNTAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTAQE{M(Oxidation (M))|F};[Y{I|L}]NVTAEQ{M(Oxidation (M))|F};[Y{I|L}]VTNAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTAE[AG]{M(Oxidation (M))|F};[Y{I|L}]VGGTAEQ{M(Oxidation (M))|F};[Y{I|L}]NVTAQE{M(Oxidation (M))|F};[Y{I|L}]VTNAQE{M(Oxidation (M))|F};[Y{I|L}]VNTA[AG]E{M(Oxidation (M))|F};[Y{I|L}]VGGTAQE{M(Oxidation (M))|F} 7.0838;6.7946;6.487;6.3667;6.2339;6.2339;6.1978;6.0776;5.9447;5.9447 -;-;-;-;-;-;-;-;-;- 4775 NaN NaN 178635 NaN 10230 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13167 59.381 NaN 183180 35 0 19896 0.261 + 7738 FYMDTSHLF 9 70 588.7553249197848 1175.4960969063695 2 588.7553100585938 MULTI HCD FTMS 0 0 0 13164 52442.5625 0.15501777728922436 10 -0.24158096313476562 3 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 71.13359017698441 0.008721403657255008 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 60.377 0 0 5.1363 5.1363 88.886 0 0 0 52.4182063698202 7.816658315635081 7.816658315635081 15.757659435244733 0 1.7786596949921218 0 0.6549471895720984 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}D[NG][PG]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}D[NG][VP]A{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[HT]M{[DS]|[MA]|[CV]|TT}[Y{I|L}];[Y{M(Oxidation (M))|F}][VS]M[HT]YE;[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[HT]YE 5.1363;3.7958;3.4198;3.16;1.606;1.5008;1.414 +;-;-;-;-;-;- + 310 + NaN NaN 124987.3 NaN 10231 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13168 59.384 NaN 183710 35 0 13421 0.261 + 865 AWYLTYGSW 9 67 573.7647831195529 NaN 0 573.7647705078125 PEAK HCD FTMS 0 0 0 13164 82419.859375 0.9217888873578761 -15 0.4054069519042969 4 Unmodified _AWYLTYGSW_ ENSG00000139914|ENST00000267426|FITM1;nc|ENSG00000139914|A5D6W6-2|FITM1 10.823927491677226 0.2427956001690155 1 VS 2 8 18.583 0 0 1.6223 0 0 755.3252682881308 201.0666903131469 956.3919586012777 0 0 0 0 0 1 0 0 0 VS 1.6223 - 22 + NaN NaN 126387.2 NaN 10232 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13169 59.388 NaN 299290 35 0 29830 0.261 + 21938 QEDNESTNS 9 67 512.1957178766046 1022.3768828200092 2 512.1965942382812 MULTI HCD FTMS 0 0 0 13164 70460.8125 0.3627609005238584 -3 0.0783843994140625 5 Unmodified _QEDNESTNS_ REV__ENSG00000185658|ENST00000342449|BRWD1;REV__ENST00000473813.1_1_21:40582792-40590527:-|nuORF;REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__nc|ENSG00000185658|Q9NSI6|BRWD1 1.4819007175156935 0.3397831423917744 1 DYET{I|L}G[VP] 8 -1 15.003 0 0 1.4675 0 0 129.99115391551544 0 129.99115391551544 0 -2.6215715921996736 -2.6215715921996736 0 0 0 0 0.3054621874040891 0 DYET{I|L}G[VP] 1.4675 - 200 + NaN NaN 123604 NaN 10233 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13170 59.391 NaN 94953 35 0 10436 0.262 + 21644 PYRLIFEKF 9 52 404.8973420405621 1211.6701967218862 3 404.8974914550781 MULTI HCD FTMS 0 0 0 13164 50593.52734375 0.09631229228666614 32 -0.8241424560546875 6 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 18.721224879955976 0.19860910938195908 1 K{M(Oxidation (M))|F} 2 7 27.959 0 0 2.3075 0 0 918.4956494580175 0 918.4956494580175 0 14.859856381998782 0 0 0 0.8494850021680094 0 0 0 + K{M(Oxidation (M))|F} 2.3075 + + 36 + NaN NaN 118692 NaN 10234 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13171 59.394 NaN 213430 35 0 11361 0.261 + 4373 EWPKHWPTF 9 84 614.3016132666426 NaN 0 614.3019409179688 PEAK HCD FTMS 0 0 0 13164 27419.810546875 0.7065794851043441 1 -0.026096343994140625 7 Unmodified _EWPKHWPTF_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF 8.97624648632007 0.2517492044696307 1 EE 2 8 7.5494 0 0 0.61548 0 0 132.12195104324752 833.3596895807249 965.4816406239725 0 0 0 0 0 0 0 0.8252574989159953 0 EE 0.61548 - 235 + NaN NaN 119592.7 NaN 10235 2934 13164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13173 59.399 NaN 2487700 35 0 353230 0.327 -1 0 124 617.3170389703915 1232.619525007583 2 617.3168334960938 MULTI HCD FTMS 0 0 0 13172 1763860.625 0.7910535825304167 -3 0.07501220703125 1 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 10 -1 102.6 0 0 8.3238 0 0 0 144.04581804647606 144.04581804647606 61.59426357727687 0 0 0 0 2.3505762035186217 1.5228787452803376 1.4080306233405298 1.8851518780601921 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 8.3238 - 11229 NaN NaN 468642.1 NaN 10236 2935 13172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13174 59.404 NaN 678370 35 0 74494 0.261 + 4673 EYPDRIMNTF 10 78 643.2977950714372 1284.5810372096744 2 643.2977905273438 MULTI HCD FTMS 0 0 0 13172 368637.65625 0.11841711387769606 21 -0.5122795104980469 2 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 121.50329630698991 3.65857907354071E-05 1 [YE]PDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 73.813 0 0 5.746 5.746 89.203 0 0 0 52.35892340822657 20.809159218443796 20.809159218443796 12.417114474659215 0 2.142642683904553 1.6989700043360187 1.329689690656103 0.6747425010840047 + + [YE]PDR{I|L}MNT{M(Oxidation (M))|F};[YE]PDR{I|L}MGGT{M(Oxidation (M))|F};[YE]PDVG{I|L}[HQ]{NN|[MP]|[D{I|L}]|[EV]};[YE]PDV[YR]N{[ET]|[MV]};[YE]PDVGH[Q{I|L}]{NN|[MP]|[D{I|L}]|[EV]};[YE]PDVGH{[VA]|[{I|L}G]}A{NN|[MP]|[D{I|L}]|[EV]};[YE]P[RN][YV]D{[ET]|[MV]};[YE]PDV[YR]GG{[ET]|[MV]};{[QS]|[NT]}{M(Oxidation (M))|F}[YR]V{[HG]|PP}[YE] 5.746;4.7794;2.5399;2.2128;2.1715;2.1421;1.6097;1.4993;0.18763 +;-;-;-;-;-;-;-;- + 347 + NaN NaN 190240.3 NaN 10237 2935 13172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13175 59.407 NaN 604080 35 0 43356 0.262 + 7390 FVIGREEVL 9 92 531.3036980455665 1060.592843157933 2 531.3038330078125 MULTI HCD FTMS 0 0 0 13172 82628.8046875 0.4958669033740745 1 -0.01950836181640625 3 Unmodified _FVIGREEVL_ ENSG00000103037|ENST00000219315|SETD6;ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6 38.175570920033316 0.07371992880350783 1 {I|L}NVEEV{I|L} 7 4 50.227 0 0 4.7358 0 0 246.1366444318375 0 246.1366444318375 0 26.506530127330432 0 0 0 0.8252574989159953 0 0.3807196863200844 0.2742275032520141 {I|L}NVEEV{I|L} 4.7358 - 816 NaN NaN 190053.5 NaN 10238 2935 13172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13176 59.411 NaN 203730 35 0 10705 0.261 -1 FYMDTSHLF 9 78 588.7553249197848 1175.4960969063695 2 589.7597045898438 MULTI HCD FTMS 0 0 0 13172 24900.740234375 0.16822378915142933 10 -0.24507904052734375 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 12.531546534597751 0.2520865569484384 1 D{I|L} 2 -1 10.969 0 0 0.93315 0 0 258.029607471906 686.3339058840523 944.3635133559583 0 0 0 0 0 0 0 0 0 D{I|L} 0.93315 - 115 + NaN NaN 116261.7 NaN 10239 2935 13172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13177 59.414 NaN 173260 35 0 16057 0.261 + 31913 VYNRAALLW 9 74 553.3114517230955 1104.608350512991 2 553.811767578125 MULTI HCD FTMS 0 0 0 13172 37215.16015625 0.9401170187560977 -3 0.07501220703125 5 Unmodified _VYNRAALLW_ ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2 36.04419817259434 0.08350412372117409 1 [YV]{[ES]|[DT]|[{I|L}C]}[VP]{I|L}{I|L}W 9 4 + 47.002 0 0 4.2551 4.2551 87.162 0 0 0 8.062092033900669 12.053754432503808 8.062092033900669 14.148904577930118 0 1.5629529932484498 1.5228787452803376 0 0 [YV]{[ES]|[DT]|[{I|L}C]}[VP]{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}H]|[RQ]}K;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}HH[VP]{I|L}{I|L}[VS] 4.2551;2.9742;2.4545;2.3425;1.3969 -;-;-;-;- 211 NaN NaN 105597.1 NaN 10240 2935 13172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13179 59.419 NaN 717440 35 0 76745 0.327 + 18845 NAELWQVSW 9 102 566.7748582236685 1131.535163514137 2 566.7745361328125 MULTI HCD FTMS 0 0 0 13178 183227.390625 0.5798421732761239 30 -0.7785377502441406 1 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 1 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 9 6 + 60.261 0 0 5.3256 5.3256 82.545 0 0 0 1.2985455329270792 1.2985455329270792 1.2985455329270792 1.2985455329270792 0 2.579689690656103 0 0.6382104921644451 0 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW;[YR]AS[YT]VSW;[YR]A[YT]SVSW;{[CT]|[{M(Oxidation (M))|F}G]}[H{I|L}]{[CP]|[EA]}SVSW;[DP][HK][YT]VSW;[YV][H{I|L}][DN]VSW;[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS{[DA]|[EG]};[YR]{M(Oxidation (M))|F}{[MG]|[TS]}SW[VS];[YR]AS{[MG]|[TS]}[YV]W;{[DS]|[MA]|[CV]|TT}[KP][WQ]VSW 5.3256;5.2108;4.8946;4.672;3.5701;3.4895;3.3429;3.2375;3.0454;3.0316 -;-;-;-;-;-;-;-;-;- 2784 NaN NaN 192706.1 NaN 10241 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13180 59.423 NaN 636480 35 0 55040 0.261 + 3663 ELLFHYVF 8 89 534.2810736717572 1066.5475944103143 2 534.2818603515625 MULTI HCD FTMS 0 0 0 13178 207352.296875 0.595931924117956 3 -0.081817626953125 2 Unmodified _ELLFHYVF_ REV__ENSG00000135966|ENST00000393359|TGFBRAP1 34.18733598223924 0.30560024141787767 1 {I|L}TQ{I|L} 4 -1 41.419 0 0 3.8835 0 0 593.2633534162125 0 593.2633534162125 0 18.443554337702807 0 0 0 0.8807196863200843 0 0.28872548999643577 0.2302046884880938 {I|L}TQ{I|L} 3.8835 - 1403 NaN NaN 178864.4 NaN 10242 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13181 59.427 NaN 621560 35 0 80300 0.261 + 32047 VYQEEKEAR 9 91 576.289840905275 1150.56512887735 2 576.7740478515625 MULTI HCD FTMS 0 0 0 13178 27796.783203125 0.2878071722787228 1 -0.02610015869140625 3 Unmodified _VYQEEKEAR_ REV__ENST00000521104.1_1_6:56504020-56557947:-|nuORF;REV__nc|ENSG00000151914|Q03001-13|DST 19.256988751693697 0.19398022840297344 1 VYS{M(Oxidation (M))|F}TK{M(Oxidation (M))|F}{I|L} 8 -1 54.867 0 0 4.7687 0 0 0 162.02300440006096 162.02300440006096 22.900990676322902 0 0 0 0 0.5114393726401688 1.2218487496163564 0.2742275032520141 0 VYS{M(Oxidation (M))|F}TK{M(Oxidation (M))|F}{I|L} 4.7687 - 934 + NaN NaN 179795.9 NaN 10243 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13182 59.43 NaN 516750 35 0 82212 0.261 + 7466 FVVEHDFIM 9 83 576.7734505099356 1151.5323480866712 2 577.275146484375 MULTI HCD FTMS 0 0 0 13178 138700.765625 0.5775117634973307 7 -0.17315292358398438 4 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 74.42276476219924 0.007657080072768255 1 [{M(Oxidation (M))|F}V]VEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 [{M(Oxidation (M))|F}V] + + 49.772 5.2288 2.1243 4.3223 4.3223 60.516 0 0 0 0 41.70030918122043 0 0 0 1.992992819099939 0 0.28872548999643577 0 + + [{M(Oxidation (M))|F}V]VEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.3223 + + 223 + NaN NaN 171271 NaN 10244 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13183 59.433 NaN 213580 35 0 23046 0.261 + 31473 VYEKNGYIYF 10 57 648.3189699847376 1294.623387036275 2 648.3187866210938 MULTI HCD FTMS 0 0 0 13178 51156.4609375 0.3092181478759332 3 -0.081817626953125 5 Unmodified _VYEKNGYIYF_ chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13 29.84058131909904 0.23356904650364865 1 EP{M(Oxidation (M))|F} 3 8 36.198 0 0 2.796 0 0 903.4537220685562 0 903.4537220685562 0 15.740312677277188 0 0 0 1 0 0 0 EP{M(Oxidation (M))|F} 2.796 - 60 NaN NaN 120990.8 NaN 10245 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13184 59.437 NaN 241020 35 0 29079 0.261 -1 FPAGYMYPSM 10 56 598.2437474687239 1194.4729420042477 2 598.2432861328125 MULTI HCD FTMS 0 0 0 13178 47206.73828125 0.2562051426213945 37 -0.9618949890136719 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 37.97399986684836 0.1629881689457739 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 49.196 0 0 4.1186 0 0 535.2427845685562 0 535.2427845685562 0 42.2062251842808 0 0 0 1.774227503252014 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.1186 + + 120 NaN NaN 116602.5 NaN 10246 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13185 59.44 NaN 186430 35 0 20310 0.261 + 31914 VYNRAALLW 9 79 553.3114517230955 1104.608350512991 2 553.3113403320312 MULTI HCD FTMS 0 0 0 13178 61667.29296875 1 0 0 7 Unmodified _VYNRAALLW_ ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2 42.09456458481378 0.05572955244001856 1 [YV]{[ES]|[DT]|[{I|L}C]}[VP]{I|L}{I|L}W 9 4 + 46.193 0 0 4.1819 4.1819 80.743 0 0 0 6.940834170577901 20.546218740408904 6.940834170577901 1.383026981662809 0 1.6861818737241734 1.5228787452803376 0 0 [YV]{[ES]|[DT]|[{I|L}C]}[VP]{I|L}{I|L}W;[YV][{I|L}P]{[DS]|[MA]|[CV]|TT}{I|L}{I|L}W;[YV][RN]AA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}[VP]{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[DS]|[MA]|[CV]|TT}[{I|L}P]P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AA[RN]P{M(Oxidation (M))|F};[YV][RN][RV]{I|L}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[RE]|[WV]}[KG]W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[RE]|[WV]}{I|L}[KG]W 4.1819;4.0567;4.0225;3.0873;2.7618;2.6366;2.6024;2.321;2.2951;2.0019 -;-;+;-;-;-;-;-;-;- + 539 NaN NaN 113686.5 NaN 10247 2936 13178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13187 59.445 NaN 1985800 35 0 602010 0.327 + 31997 VYPLMKEYF 9 79 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 13186 1143334.875 0.2724626808051571 27 -0.6900482177734375 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 75.76082778847304 0.0072241045649327805 1 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 87.418 0 0 7.2571 7.2571 87.462 0 0 0 22.085521743960328 16.478174818886373 16.478174818886373 4.436974992327123 0 1.805462187404089 2 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]EK{M(Oxidation (M))|F}[{I|L}P]Y{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}[YV]KEY{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 7.2571;6.8888;5.4237;5.3914;5.3465;5.284;5.2193;4.9514;4.8667;4.8509 +;-;-;-;-;-;-;-;-;- + 1335 NaN NaN 384420.5 NaN 10248 2937 13186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13188 59.449 NaN 523550 35 0 60031 0.261 -1 0 93 582.3449039786885 1162.675255024177 2 582.3447875976562 MULTI HCD FTMS 0 0 0 13186 180899.40625 0.03742124111294322 33 -0.8539009094238281 2 NaN NaN 1 V{I|L}DK{I|L} 5 -1 39.795 0 0 3.4227 0 0 576.3060169904312 0 576.3060169904312 0 19.160006443871893 0 0 0 1.024227503252014 0 0 0 V{I|L}DK{I|L} 3.4227 - 764 NaN NaN 163054.2 NaN 10249 2937 13186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13189 59.453 NaN 438310 35 0 36516 0.261 -1 EYMEHVYLI 9 77 606.7838077584753 1211.5530625837505 2 606.7984619140625 MULTI HCD FTMS 0 0 0 13186 81406.1796875 0.11267274736706702 33 -0.8539009094238281 3 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 12.531546534597751 0.2520865569484384 1 MEE{M(Oxidation (M))|F}EN 6 -1 43.716 0 0 3.6083 0 0 0 429.2255037897094 429.2255037897094 24.335528354938628 0 0 0 0 0 0 0.3807196863200844 0.4247425010840047 MEE{M(Oxidation (M))|F}EN 3.6083 - 1387 + NaN NaN 154748.5 NaN 10250 2937 13186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13190 59.456 NaN 413760 35 0 61164 0.262 + 20967 PLGVDRELL 9 80 506.29501194219137 1010.5754709511828 2 506.2952880859375 MULTI HCD FTMS 0 0 0 13186 89454.7890625 0.8645299256940914 -3 0.07170486450195312 4 Unmodified _PLGVDRELL_ ENSG00000126522|ENST00000304874|ASL;nc|ENSG00000126522|P04424-2|ASL;nc|ENSG00000126522|P04424-3|ASL 15.847184025352803 0.2234401846867398 1 {I|L}{I|L} 2 7 25.217 0 0 2.4953 0 0 766.3978191363449 0 766.3978191363449 0 10.616654650433048 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.4953 + + 141 NaN NaN 148242.8 NaN 10251 2937 13186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13191 59.46 NaN 75547 35 0 6741.2 0.261 + 21616 PYPFTHHWQF 10 47 453.8808651964639 NaN 0 453.8803405761719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 3.072263186857199 0.33755485754653514 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108204.9 NaN 10252 2937 13186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13193 59.464 NaN 2171100 35 0 219410 0.327 + 32240 VYTTTVHWL 9 106 560.2953654435589 1118.5761779539177 2 560.2954711914062 MULTI HCD FTMS 0 0 0 13192 1012382.1875 0.984774226699643 3 -0.08516311645507812 1 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 179.22989800431262 1.129651853483991E-12 1 VYTTTVHW{I|L} 9 0 + 102.86 0 0 9.1955 9.1955 95.994 0 0 0 88.5649218306807 5.841343854504743 5.841343854504743 18.208253071758875 0 2.4604093769761874 1.6989700043360187 1.1421590589602533 0 + + VYTTTVHW{I|L};[YV]TTTVHW{I|L};[YV]TTTVH{I|L}W;VYTT[HV]TW{I|L};[YT]VTTVHW{I|L};VYT{[NV]|[RG]}[QP]W{I|L};VYHA[PS]TV{M(Oxidation (M))|F}V;[YT]VTTVH{I|L}W;[YV]TT[YR]{[MS]|[{M(Oxidation (M))|F}A]}V;[YV][YK]{[RE]|[WV]}YV 9.1955;7.5677;7.2273;6.2415;4.8463;4.8446;4.827;4.5059;4.4484;3.9896 +;+;-;-;-;-;-;-;-;- + 7617 + NaN NaN 418733.7 NaN 10253 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13194 59.469 NaN 663920 35 0 45228 0.261 + 591 APFKFDMEL 9 96 557.2678406421421 1112.5211283510841 2 557.26806640625 MULTI HCD FTMS 0 0 0 13192 357302.21875 0.49429884194821777 4 -0.10471725463867188 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 121.5340881639634 0.001118397630175091 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 88.701 0 0 7.973 7.973 90.035 0 0 0 7.986023529516061 7.986023529516061 7.986023529516061 7.986023529516061 0 3.110924374808178 0 2.103917193908117 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}[YQ]V{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D[VP][QT]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YD{M(Oxidation (M))|F}K[PS]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YD{M(Oxidation (M))|F}KEPA 7.973;7.2551;6.945;5.8673;5.6833;5.3886;5.3249;4.2689;3.372;2.9833 +;+;-;-;-;-;-;-;-;- + 1734 + NaN NaN 179825.5 NaN 10254 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13195 59.473 NaN 1098500 35 0 127970 0.261 + 29334 TYPAELNNI 9 81 517.7612750508302 1033.5079971684604 2 517.7614135742188 MULTI HCD FTMS 0 0 0 13192 459544.15625 0.749836295014282 -1 0.019519805908203125 3 Unmodified _TYPAELNNI_ ENSG00000106546|ENST00000242057|AHR 160.51597146486608 8.986712039288196E-09 1 [YT][PA]E{I|L}NN{I|L} 9 0 + 97.404 0 0 9.4246 9.4246 93.357 0 0 0 15.581597033474424 15.581597033474424 15.581597033474424 9.208187539523749 0 2.305462187404089 1.6989700043360187 1.4436726795685342 0.7059771852360797 + + [YT][PA]E{I|L}NN{I|L};[YT][PA]E{I|L}NGG{I|L};[YT][PA]E{I|L}GGN{I|L};{[ET]|[MV]}[{I|L}P]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NN{I|L} 9.4246;8.5337;8.219;1.3512 +;-;-;- + 421 NaN NaN 251971 NaN 10255 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13196 59.476 NaN 631960 35 0 26707 0.261 + 33543 YIKGEAQFQ 9 98 542.2774710116712 1082.5403890901423 2 542.7689208984375 MULTI HCD FTMS 0 0 0 13192 19675.009765625 0.19864595603761462 14 -0.3392219543457031 4 Unmodified _YIKGEAQFQ_ REV__ENSG00000170954|ENST00000243643|ZNF415;REV__nc|ENSG00000170954|Q09FC8-2|ZNF415;REV__nc|ENSG00000170954|Q09FC8-4|ZNF415;REV__nc|ENSG00000170954|Q09FC8-6|ZNF415;REV__nc|ENSG00000170954|Q09FC8|ZNF415 39.957323273324995 0.06554068735427583 1 EQATN{I|L}P{M(Oxidation (M))|F} 8 -1 59.102 0 0 5.4595 0 0 164.0955963694875 0 164.0955963694875 0 14.773182404955975 0 0 0 0 0 1.360924374808178 1.0189301784845295 EQATN{I|L}P{M(Oxidation (M))|F} 5.4595 - 5608 + NaN NaN 182638.6 NaN 10256 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13197 59.479 NaN 235050 35 0 21592 0.261 + 16812 LYECTGQFDF 10 60 611.7580001998368 1221.5014474664736 2 611.75830078125 MULTI HCD FTMS 0 0 0 13192 69753.7578125 0.18062206464497377 15 -0.35540771484375 5 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 22.65808497894818 0.29917593477267174 1 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 48.042 0 0 3.933 0 0 305.138475486525 0 305.138475486525 0 42.5574012986743 0 0 0 2.2302046884880937 0 0 0 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.933 - 111 NaN NaN 116175.4 NaN 10257 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13198 59.482 NaN 203200 35 0 15242 0.261 + 35850 YYQNYFEKL 9 62 634.3036450504073 1266.5927371676146 2 634.3035278320312 MULTI HCD FTMS 0 0 0 13192 71494.4765625 0.03496550145319781 36 -0.9490966796875 6 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 76.82478488871298 0.006879825292024087 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 79.236 0 0 6.2558 6.2558 88.36 0 0 0 25.642492736872597 64.8109905092165 25.642492736872597 9.208187539523749 0 2.004432191740108 2 0.3494850021680094 0.7614393726401688 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L} 6.2558;5.5288 +;- + 152 NaN NaN 118479.3 NaN 10258 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13199 59.486 NaN 266090 35 0 30534 0.261 + 9835 HYQDVSCLQF 10 60 620.2768742249386 1238.5391955166772 2 620.2767333984375 MULTI HCD FTMS 0 0 0 13192 101158.8125 0.4145748371871253 5 -0.127532958984375 7 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 35.61225514009592 0.18348312004207498 1 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 9 5 70.367 0 0 5.6814 0 0 241.14210707832189 0 241.14210707832189 0 52.94408732588998 0 0 0 1.8494850021680094 0 0.4247425010840047 0 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 5.6814 - 464 NaN NaN 117684.2 NaN 10259 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13200 59.489 NaN 387710 35 0 68618 0.264 + 664 APLREEAVRLF 11 75 434.2509290790705 1299.7309578374116 3 434.25115966796875 MULTI HCD FTMS 0 0 0 13192 121012.109375 0.9285467605215527 -12 0.31097412109375 8 Unmodified _APLREEAVRLF_ ENSG00000068137|ENST00000591022|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-4|PLEKHH3 4.406150317652783 0.39959678800402487 1 W{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 8 9 48.608 0 0 3.7399 0 0 129.09665853359098 0 129.09665853359098 0 33.123825531162296 0 0 0 0.4247425010840047 0 0 0.3494850021680094 W{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 3.7399 - 336 + NaN NaN 141283.9 NaN 10260 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13201 59.492 NaN 148160 35 0 11580 0.261 + 19857 NYAWVYYHM 9 61 631.7688949312696 1261.5232369293392 2 631.7683715820312 MULTI HCD FTMS 0 0 0 13192 49870.32421875 0.17331012486666575 28 -0.7329177856445312 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 77.98433622928108 0.006504613272346738 1 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 82.8 0 0 6.5635 6.5635 89.871 0 0 0 8.335682082013776 8.335682082013776 8.335682082013776 9.771212547196626 0 2.6237125054200234 1.6989700043360187 0 0.6139829889124311 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]WTY[Y{I|L}][HC];[YN]AWY[WE][KC] 6.5635;5.7889;4.862;3.236;2.5456 -;-;-;-;- 264 NaN NaN 107509.2 NaN 10261 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13202 59.496 NaN 219640 35 0 22905 0.261 -1 DMYQHLRSM 9 59 598.7647105022885 NaN 0 598.7646484375 PEAK HCD FTMS 0 0 0 13192 17362.921875 0.35613116730595334 1 -0.036197662353515625 10 Oxidation (M) _DM(Oxidation (M))YQHLRSM_ ENSG00000140943|ENST00000343411|MBTPS1 7.289230182591677 0.2599242500475609 1 SPY[W{M(Oxidation (M))|F}]P 6 -1 13.901 0 0 1.1628 0 0 166.09253325157812 249.05613123111564 415.1486644826938 0 0 0 0 0 0 0 0 0 SPY[W{M(Oxidation (M))|F}]P 1.1628 - 61 + NaN NaN 125030.7 NaN 10262 2938 13192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13204 59.501 NaN 2608400 35 0 300200 0.327 + 27050 SYMGHFDLL 9 116 549.749911500793 1097.485270068386 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13203 1996240.125 0.1903821581303669 11 -0.2508049011230469 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 149.9946105101851 8.83195450578534E-06 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 89.826 0 0 8.1847 8.1847 92.796 0 0 0 43.74140989918582 9.88991774771263 9.88991774771263 10.268024924119658 0 2.579689690656103 2 1.673877368056628 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}HG{M(Oxidation (M))|F}YS;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}HG{M(Oxidation (M))|F}SY;{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}WQNY 8.1847;7.2491;5.8454;3.6325;3.1644;3.0688;2.8206;2.8189;2.7463;2.3008 +;-;+;-;-;-;-;-;-;- + 2930 + NaN NaN 483916.9 NaN 10263 2939 13203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13205 59.505 NaN 1560100 35 0 383370 0.261 + 27411 SYTSGLETL 9 68 485.7401172817481 969.4656816302962 2 485.7400207519531 MULTI HCD FTMS 0 0 0 13203 1057314 1 0 0 2 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 149.9946105101851 8.83195450578534E-06 1 {[{M(Oxidation (M))|F}C]|[YS]}TSG{I|L}ET{I|L} 9 0 + 77.686 0 0 8.0133 8.0133 94.82 0 0 0 4.762036441594191 36.66000644387189 4.762036441594191 23.042359562158126 0 2.2302046884880937 0 1.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}TSG{I|L}ET{I|L};[DP][EP]G{I|L}ET{I|L};[{I|L}T]E{I|L}GST{[{M(Oxidation (M))|F}C]|[YS]};{[ET]|[MV]}{I|L}{I|L}GST{[{M(Oxidation (M))|F}C]|[YS]} 8.0133;5.6365;2.4545;1.8215 +;-;-;- + 494 NaN NaN 311642.1 NaN 10264 2939 13203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13206 59.509 NaN 720970 35 0 150240 0.261 + 19359 NPDPAVYQL 9 71 508.755906186611 1015.497259440022 2 508.7560119628906 MULTI HCD FTMS 0 0 0 13203 428029.75 0.7797702843458788 1 -0.0228118896484375 3 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 62.57269311338072 0.013982455292112035 1 {I|L}E[HD]VYQ{I|L} 8 4 + 50.978 0 0 5.02 5.02 88.637 0 0 0 24.50781977329818 11.777807052660805 11.777807052660805 15.295000083553198 0 1.774227503252014 0 0.5 1.274227503252014 {I|L}E[HD]VYQ{I|L};{I|L}E[HD]VYGA{I|L};[VP][EP][NG]YQ{I|L};{I|L}E[HD]V[VS]A{M(Oxidation (M))|F};[Q{I|L}]{[CP]|[EA]}[WE]Q{I|L} 5.02;3.5139;3.4072;1.96;1.7077 -;-;-;-;- 513 + NaN NaN 192067.2 NaN 10265 2939 13203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13207 59.512 NaN 1161800 35 0 184970 0.261 + 18484 MQRKRNIQ 8 93 537.3029357577842 NaN 0 537.3214721679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MQRKRNIQ_ REV__ENST00000356884.10_1_9:95475770-95475854:-|nuORF 19.438996006549623 0.38500361301801034 1 M{I|L}P[KP]{I|L} 6 -1 22.664 0 0 2.113 0 0 131.05726682139692 259.1087714079015 390.1660382292984 0 0 0 0 0 0 0 0 1.1237125054200234 M{I|L}P[KP]{I|L} 2.113 - 140 + NaN NaN 265912 NaN 10266 2939 13203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13208 59.515 NaN 1183300 35 0 239210 0.261 + 8781 HIIDDALVRL 10 102 582.8400430246339 1163.6655331160678 2 582.8397216796875 MULTI HCD FTMS 0 0 0 13203 542303.75 0.8696776487834791 -4 0.10132598876953125 5 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 93.93812099017352 0.0007001511577108254 1 H{I|L}{I|L}DD{I|L}AVR{I|L} 10 2 + 94.962 0 0 8.1606 8.1606 87.225 0 0 0 9.506798604685955 9.506798604685955 9.506798604685955 0.9640156839957825 0 2.8737125054200234 1.6989700043360187 0.6382104921644451 0.5228787452803376 H{I|L}{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}D[TP]TVR{I|L};[H{I|L}]{I|L}DDA{I|L}VR{I|L};[QP][RP]DA{I|L}V[VG]{I|L};{[QN]|[E{I|L}]|[KN]}[HV]DA{I|L}VR{I|L};{[QN]|[E{I|L}]|[KN]}[HV]DA{I|L}V[VG]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[YK][QT]R{I|L} 8.1606;8.0778;7.5532;7.3436;2.9162;2.7941;2.0065;0.33777 -;+;-;+;-;-;-;- + 933 + NaN NaN 262280.3 NaN 10267 2939 13203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13209 59.519 NaN 363110 35 0 49171 0.261 + 24597 RYLPQCSYF 9 81 588.7792236612701 1175.54389438934 2 588.7789306640625 MULTI HCD FTMS 0 0 0 13203 117932.8359375 0.5694428202627658 -6 0.15019989013671875 6 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 45.69961567697781 0.039180348357221985 1 CSY{M(Oxidation (M))|F} 4 5 52.779 0 0 4.4898 0 0 657.3597564872359 0 657.3597564872359 0 43.0866814795592 0 0 0 1.805462187404089 0 0.8807196863200843 0 + CSY{M(Oxidation (M))|F} 4.4898 + + 300 NaN NaN 135662.8 NaN 10268 2939 13203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13211 59.523 NaN 254750 35 0 44346 0.327 + 34902 YSHPGMSTL 9 65 496.7312055304176 NaN 0 496.7314453125 PEAK HCD FTMS 0 0 0 13210 121052.2890625 0.5769564573374788 1 -0.026153564453125 1 Unmodified _YSHPGMSTL_ REV__ENST00000491144.5_1_3:183852834-183852972:+|nuORF 26.88365393820708 0.14119366324382274 1 TS{[VA]|[{I|L}G]}E 5 -1 25.203 0 0 2.542 0 0 250.0949193542554 251.1009920709594 501.19591142521483 0 0 0 0 0 1.1747425010840047 0 0.4247425010840047 0 TS{[VA]|[{I|L}G]}E 2.542 - 52 + NaN NaN 124563 NaN 10269 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13212 59.528 NaN 363440 35 0 43182 0.261 + -1 CCWAGCLP 8 73 512.1957178766046 1022.3768828200092 2 512.1957397460938 MULTI HCD FTMS 0 0 0 13210 121019.9765625 0.6230600261555136 3 -0.06852340698242188 2 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))WAGC(Carbamidomethyl (C))LP_ REV__ENST00000255486.8_1_13:33760038-33760209:-|nuORF 2.8892196856762586 0.5377058178582064 1 {I|L}T{I|L} 3 -1 18.314 0 0 1.7913 0 0 677.1503336030155 0 677.1503336030155 0 7.059771852360798 0 0 0 0.6109243748081782 0 0.3252574989159953 0 {I|L}T{I|L} 1.7913 - 103 + NaN NaN 153393.1 NaN 10270 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13213 59.531 NaN 237440 35 0 52572 0.261 + 12700 KWPDRITLL 9 61 571.3399074528259 1140.6652619724516 2 571.3399047851562 MULTI HCD FTMS 0 0 0 13210 93292.46875 0.43697762021477393 7 -0.16972732543945312 3 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 14.405379775768559 0.2358970535022398 1 KW 2 7 24.776 0 0 2.1721 0 0 0 823.4685231990261 823.4685231990261 17.697953115119063 0 0 0 0 0.3807196863200844 0 0 0 + KW 2.1721 + + 61 + NaN NaN 124692 NaN 10271 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13214 59.535 NaN 173630 35 0 57177 0.262 + 19031 NDFLTGVF 8 38 456.726754494783 911.438956056366 2 456.72698974609375 MULTI HCD FTMS 0 0 0 13210 94566.421875 0.7645708856482719 1 -0.026153564453125 4 Unmodified _NDFLTGVF_ ENSG00000169169|ENST00000598293|CPT1C;ENST00000295404.9_1_19:50194996-50204826:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;ENST00000600944.5_1_19:50195509-50200723:+|nuORF;nc|ENSG00000169169|Q8TCG5-2|CPT1C;nc|ENSG00000169169|Q8TCG5-3|CPT1C 12.531546534597751 0.5015908124873912 1 V{M(Oxidation (M))|F} 2 6 30.969 0 0 3.3978 0 0 647.2918062032362 0 647.2918062032362 0 30.969100130080562 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 3.3978 + + 12 + NaN NaN 126699.5 NaN 10272 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13215 59.538 NaN 305940 35 0 49374 0.261 + 29330 TYNTSNFLP 9 70 528.752220293322 1055.489887653444 2 528.7526245117188 MULTI HCD FTMS 0 0 0 13210 76997.7265625 0.912309610145523 1 -0.026153564453125 5 Unmodified _TYNTSNFLP_ REV__ENSG00000196159|ENST00000394329|FAT4;REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7|FAT4 7.289230182591677 0.29575926068275815 1 [YT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 5 -1 18.557 0 0 1.7581 0 0 0 397.2207585853377 397.2207585853377 7.916571675752875 0 0 0 0 0.5 2 0 0 [YT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 1.7581 - 125 NaN NaN 148466.2 NaN 10273 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13216 59.541 NaN 304450 35 0 20659 0.261 + 1398 AYQHAFLYIRQ 11 78 470.58220714964807 1408.7247920491443 3 470.58209228515625 MULTI HCD FTMS 0 0 0 13210 51816.796875 0.6688933023131886 1 -0.026153564453125 6 Unmodified _AYQHAFLYIRQ_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENST00000477976.5_1_1:880076-889593:-|nuORF 7.477065608646677 0.3861287967437539 1 AY 2 9 31.044 0 0 2.2037 0 0 0 1171.6041490917955 1171.6041490917955 11.440162615404077 0 0 0 0 0.3252574989159953 1.3979400086720375 0 0 + AY 2.2037 + + 22 + NaN NaN 128400.6 NaN 10274 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13217 59.545 NaN 153820 35 0 12712 0.261 -1 MMNNTDFLM 9 54 595.7283879899645 1189.442223046729 2 595.72802734375 MULTI HCD FTMS 0 0 0 13210 44022.6796875 0.49822668917670315 5 -0.120941162109375 7 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))MNNTDFLM(Oxidation (M))_ nc|ENSG00000291085|Q9H0A3|TMEM191A 6.2057823575117 0.30397260197431997 1 D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 4 -1 26.198 0 0 2.2025 0 0 649.2189808576187 0 649.2189808576187 0 19.744237387763093 0 0 0 1 0 0 0 D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 2.2025 + + 22 NaN NaN 104459.9 NaN 10275 2940 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13219 59.55 NaN 2115200 35 0 291650 0.327 -1 0 117 617.3170389703915 1232.619525007583 2 617.3167724609375 MULTI HCD FTMS 0 0 0 13218 1570120.625 0.7041653562685243 3 -0.06519317626953125 1 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 10 -1 103.8 0 0 8.4209 0 0 0 144.04579260908363 144.04579260908363 63.35551767994072 0 0 0 0 2.1549471895720984 1.6989700043360187 1.3076556684809653 2.0858317385287872 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 8.4209 - 10213 NaN NaN 405279.1 NaN 10276 2941 13218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13220 59.554 NaN 381850 35 0 44782 0.261 + 4674 EYPDRIMNTF 10 62 643.2977950714372 1284.5810372096744 2 643.2979736328125 MULTI HCD FTMS 0 0 0 13218 170384.765625 0.05473253166615471 27 -0.7034721374511719 2 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 93.93812099017352 0.0007001511577108254 1 [YE][DP][R{I|L}]MNT{M(Oxidation (M))|F} 10 0 + 55.69 0 0 4.3353 4.3353 82.132 0 0 0 3.8452090666831396 3.8452090666831396 3.8452090666831396 3.8452090666831396 0 2.004432191740108 1.5228787452803376 1.1989700043360187 0.3252574989159953 + + [YE][DP][R{I|L}]MNT{M(Oxidation (M))|F};[YE]A[YK][H{I|L}]NT{M(Oxidation (M))|F} 4.3353;4.0359 +;- + 88 + NaN NaN 143606.1 NaN 10277 2941 13218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13221 59.558 NaN 141320 35 0 25609 0.264 + 31292 VWFPGGAF 8 51 440.7212878422356 879.4280227512712 2 440.7214050292969 MULTI HCD FTMS 0 0 0 13218 79868.5234375 0.06858842038042072 43 -1.1325187683105469 3 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 17.086550045450526 0.4680768486079041 1 WV 2 7 48.104 0 0 5.4699 0 0 0 591.2579100746203 591.2579100746203 31.114079997524783 0 0 0 0 0.7134679910804405 2 0 0 WV 5.4699 - 63 + NaN NaN 110002.7 NaN 10278 2941 13218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13222 59.561 NaN 232970 35 0 35193 0.261 + 24902 RYQWLWEF 8 38 409.86957775862135 1226.586903876064 3 409.8697814941406 MULTI HCD FTMS 0 0 0 13218 52779.19921875 0.37885557728931646 13 -0.30634307861328125 4 Unmodified _RYQWLWEF_ REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant 3.5964929083625545 0.5366564765791996 1 T{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.5868 0 0 960.4605743856329 0 960.4605743856329 0 13.979400086720375 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5868 - 11 + NaN NaN 141164.7 NaN 10279 2941 13218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13223 59.564 NaN 175500 35 0 14094 0.261 -1 QYFDSRGMFI 10 49 640.2924453233736 1278.5703377135471 2 640.2915649414062 MULTI HCD FTMS 0 0 0 13218 60703.50390625 0.7737515342988869 -4 0.10468292236328125 5 Oxidation (M) _QYFDSRGM(Oxidation (M))FI_ ENSG00000151353|ENST00000281017|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18 18.373094154950223 0.33925629317698053 1 DC(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L} 4 -1 27.652 0 0 2.1627 0 0 725.3556385724625 0 725.3556385724625 0 20.661837734644593 0 0 0 0.5 0 0 0 DC(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L} 2.1627 - 21 NaN NaN 114828.7 NaN 10280 2941 13218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13225 59.569 NaN 5509100 35 0 939590 0.327 + 5273 FFFFLFSFLFF 11 102 503.592996758803 1507.757160876609 3 503.5931701660156 MULTI HCD FTMS 0 0 0 13224 1892014.75 0.20854725702422358 -5 0.124237060546875 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 22.774965066868997 0.25864339442684914 1 EH{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 -1 85.425 0 0 5.6657 0 0 64.02116801140535 0 64.02116801140535 0 76.09122312673765 0 0 0 2.9247425010840047 0 1.1861818737241734 0.2614393726401688 EH{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6657 - 1781 + NaN NaN 930741.2 NaN 10281 2942 13224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13226 59.574 NaN 774060 35 0 84527 0.261 + 18846 NAELWQVSW 9 82 566.7748582236685 1131.535163514137 2 566.7745361328125 MULTI HCD FTMS 0 0 0 13224 209388.84375 0.6626328181918064 36 -0.9526329040527344 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 1 SVSYTVSW 8 6 65.783 0 0 5.8136 0 0 204.08951404034957 0 204.08951404034957 0 48.30829106656459 0 0 0 0.5 0 1.1421590589602533 0 SVSYTVSW 5.8136 - 795 + NaN NaN 203008.2 NaN 10282 2942 13224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13227 59.577 NaN 540000 35 0 43343 0.261 + -1 CLMPALRSW 9 91 567.2858916146316 1132.5572302960632 2 567.805908203125 MULTI HCD FTMS 0 0 0 13224 38289.90625 0.5709270679749356 1 -0.022815704345703125 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LMPALRSW_ REV__ENST00000313732.8_1_16:85009430-85009634:-|nuORF 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}EPQ{I|L}QVSW 9 -1 + 60.512 0 0 5.343 5.343 84.394 0 0 0 35.15994091163677 13.61809917757732 13.61809917757732 5.241049764686139 0 2.0924778212679485 0 0.3494850021680094 0.5 {M(Oxidation (M))|F}EPQ{I|L}QVSW;{M(Oxidation (M))|F}EG[PA]{I|L}QVSW;{M(Oxidation (M))|F}GE[PA]{I|L}QVSW;{M(Oxidation (M))|F}AD[PA]{I|L}QVSW;{M(Oxidation (M))|F}GSV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}PPSW;{M(Oxidation (M))|F}DA[PA]{I|L}QVSW;{M(Oxidation (M))|F}DK{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}PPSW;{M(Oxidation (M))|F}EPQ{I|L}QQP{M(Oxidation (M))|F};{M(Oxidation (M))|F}GE[PA]{I|L}QQP{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SVQ{I|L}[PA]AP{M(Oxidation (M))|F} 5.343;4.8802;4.5844;4.2394;3.9723;3.888;3.1406;3.0279;2.7108;2.6575 -;-;-;-;-;-;-;-;-;- 1695 + NaN NaN 181661.2 NaN 10283 2942 13224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13228 59.58 NaN 361920 35 0 56096 0.261 + -1 LMMQNVRLM 9 82 576.289840905275 1150.56512887735 2 576.7736206054688 MULTI HCD FTMS 0 0 0 13224 64783.9609375 0.6707714511491011 7 -0.16283798217773438 4 Oxidation (M) _LMMQNVRLM(Oxidation (M))_ REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1 12.531546534597751 0.2520865569484384 1 VYS{M(Oxidation (M))|F}TVG 7 -1 28.136 0 0 2.4454 0 0 0 394.18219934635005 394.18219934635005 4.6665795145209685 0 0 0 0 0 0.9208187539523752 0 0 VYS{M(Oxidation (M))|F}TVG 2.4454 - 201 + NaN NaN 159260 NaN 10284 2942 13224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13229 59.584 NaN 178360 35 0 10662 0.261 + 31474 VYEKNGYIYF 10 51 648.3189699847376 1294.623387036275 2 648.3196411132812 MULTI HCD FTMS 0 0 0 13224 43220.69921875 0.26124998323579873 9 -0.19840621948242188 5 Unmodified _VYEKNGYIYF_ chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13 7.101721422024254 0.4377131641736035 1 {I|L}Y{M(Oxidation (M))|F} 3 7 31.198 0 0 2.4098 0 0 853.3969593732437 0 853.3969593732437 0 25.713337517843655 0 0 0 0.5 0 0 0 + {I|L}Y{M(Oxidation (M))|F} 2.4098 + + 7 NaN NaN 109909.3 NaN 10285 2942 13224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13230 59.587 NaN 75801 35 0 4901.5 0.264 + 21645 PYRLIFEKF 9 52 404.8973420405621 1211.6701967218862 3 404.8973693847656 MULTI HCD FTMS 0 0 0 13224 37320.12890625 0.07104440730082512 40 -1.0606651306152344 6 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 8.97624648632007 0.2828035605319045 1 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.2053 0 0 1046.5913220654393 0 1046.5913220654393 0 -3.3547064036788754 -3.3547064036788754 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2053 + + 8 + NaN NaN 91590.1 NaN 10286 2942 13224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13232 59.592 NaN 1321800 35 0 391530 0.327 + 31998 VYPLMKEYF 9 78 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 13231 786883.5625 0.1875184686553556 33 -0.8807449340820312 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 69.10491478415734 0.009377850133389008 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 76.961 0 0 6.389 6.389 86.705 0 0 0 19.573259432077563 16.53212513775344 16.53212513775344 6.5321251377534395 0 1.805462187404089 2 0.7302046884880937 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P{I|L}G[{M(Oxidation (M))|F}T]VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV][VS]A{M(Oxidation (M))|F}[{I|L}P]Y{M(Oxidation (M))|F};[YV]P{I|L}G[{M(Oxidation (M))|F}T]YV{M(Oxidation (M))|F};[YV][VS]A{M(Oxidation (M))|F}[Y{I|L}]P{M(Oxidation (M))|F};VY[Y{I|L}]{M(Oxidation (M))|F}A[VS]P{M(Oxidation (M))|F} 6.389;5.8467;5.8087;5.184;4.8266;4.7641;4.6079;4.6037;3.7577;3.6952 -;+;-;-;-;-;-;-;-;- + 565 NaN NaN 287972.8 NaN 10287 2943 13231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13233 59.596 NaN 570860 35 0 80573 0.262 + 19360 NPDPAVYQL 9 71 508.755906186611 1015.497259440022 2 508.755859375 MULTI HCD FTMS 0 0 0 13231 191836.015625 0.34948043787070104 5 -0.11725234985351562 2 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 32.78568957990786 0.09846250359632436 1 {I|L}E[HD]VYQ{I|L} 8 4 + 51.999 0 0 5.1206 5.1206 88.585 0 0 0 17.262357117701086 14.274852466137126 14.274852466137126 14.274852466137126 0 1.774227503252014 0 0.5 1.2302046884880937 {I|L}E[HD]VYQ{I|L};{I|L}E[HD]VYGA{I|L};{I|L}E[HD]V[VS]A{M(Oxidation (M))|F};[YT]{[ET]|[MV]}[YR]A{I|L} 5.1206;3.7149;3.2446;0.63452 -;-;-;- 207 + NaN NaN 174611.9 NaN 10288 2943 13231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13234 59.6 NaN 432060 35 0 31288 0.261 + 14792 LILDEFTTL 9 70 532.7980160339488 1063.5814791346975 2 533.3099975585938 MULTI HCD FTMS 0 0 0 13231 22518.22265625 0.11017051220091316 20 -0.5134239196777344 3 Unmodified _LILDEFTTL_ ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 15.847184025352803 0.2234401846867398 1 {I|L}{I|L}[EC]{M(Oxidation (M))|F}[KT]V 8 4 28.918 0 0 2.719 0 0 0 127.04682613208367 127.04682613208367 10.334778045573074 0 0 0 0 0.5 1.3010299956639813 0.8494850021680094 0.805462187404089 {I|L}{I|L}[EC]{M(Oxidation (M))|F}[KT]V 2.719 - 190 NaN NaN 154817.5 NaN 10289 2943 13231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13235 59.603 NaN 387350 35 0 196350 0.261 -1 FPAGYMYPSM 10 64 598.243611247786 1194.472669562372 2 598.2432861328125 MULTI HCD FTMS 0 0 0 13231 75986.4296875 0.21077982438696932 -77 2.0342636108398438 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 32.30548876998284 0.21217886106551395 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 40.93 0 0 3.4266 0 0 535.24418837715 0 535.24418837715 0 35.44531259372398 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.4266 + + 55 NaN NaN 143590.9 NaN 10290 2943 13231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13236 59.607 NaN 175800 35 0 14068 0.261 -1 QYFDSRGMFI 10 59 640.2924453233736 1278.5703377135471 2 640.2933349609375 MULTI HCD FTMS 0 0 0 13231 71174.5390625 0.9072196044511248 -2 0.042369842529296875 5 Oxidation (M) _QYFDSRGM(Oxidation (M))FI_ ENSG00000151353|ENST00000281017|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18 10.799506525563784 0.4100970765206026 1 C(Carbamidomethyl (C))D 2 -1 13.583 0 0 1.0624 0 0 278.1604999223346 722.3298057559789 1000.4903056783135 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C))D 1.0624 - 19 + NaN NaN 117500 NaN 10291 2943 13231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13237 59.61 NaN 112580 35 0 9370.4 0.261 -1 MPMQDIKMIL 10 49 626.3108861777524 1250.6072194223048 2 626.31005859375 MULTI HCD FTMS 0 0 0 13231 37495.77734375 0.4344076478838118 -10 0.24153518676757812 6 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 7.608950283845883 0.4350283211712914 1 {M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 28.768 0 0 2.3003 0 0 584.2613392560562 0 584.2613392560562 0 23.283409326844264 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L}{I|L} 2.3003 - 11 NaN NaN 110287.3 NaN 10292 2943 13231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13239 59.615 NaN 972970 35 0 105970 0.327 + 29335 TYPAELNNI 9 87 517.7612750508302 1033.5079971684604 2 517.7613525390625 MULTI HCD FTMS 0 0 0 13238 420990.6875 0.6869287598530209 5 -0.11719894409179688 1 Unmodified _TYPAELNNI_ ENSG00000106546|ENST00000242057|AHR 155.02607137521346 3.513045939247001E-06 1 [YT]PAE{I|L}NN{I|L} 9 0 + 96.525 0 0 9.3396 9.3396 93.293 0 0 0 13.047195811601128 13.047195811601128 13.047195811601128 9.208187539523749 0 2.305462187404089 1.6989700043360187 1.4291746928241125 0.3807196863200844 + + [YT]PAE{I|L}NN{I|L};[YT]PAE{I|L}GGN{I|L};[YT]PAE{I|L}NGG{I|L};[YT]PAE{I|L}GGGG{I|L};{[ET]|[MV]}{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NN{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{[CT]|[{M(Oxidation (M))|F}G]}N{I|L} 9.3396;8.4486;8.4486;7.1935;0.90621;0.69845 +;-;-;-;-;- + 598 NaN NaN 240123.4 NaN 10293 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13240 59.619 NaN 746540 35 0 73266 0.261 + 32241 VYTTTVHWL 9 93 560.2953654435589 1118.5761779539177 2 560.2955932617188 MULTI HCD FTMS 0 0 0 13238 326223.5 0.31732728895306744 9 -0.20505142211914062 2 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 146.00731375242447 1.3047045798573153E-05 1 VYTTTVHW{I|L} 9 0 + 87.647 0 0 7.8356 7.8356 95.213 0 0 0 77.30274737738627 7.463352341680476 7.463352341680476 31.94685159043489 0 1.860924374808178 1.6989700043360187 1.1747425010840047 0 + + VYTTTVHW{I|L};VYTNV[QP]W{I|L};[YV][YK]{[RE]|[WV]}YV;V[QP]G[YK]EW{I|L};V{[QN]|[E{I|L}]|[KN]}M[RP]MM{I|L};{[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}V{NN|[MP]|[D{I|L}]|[EV]}M{I|L};V[QP]G[YK]WE{I|L};V[HV]ET[KP][Y{M(Oxidation (M))|F}] 7.8356;4.9796;3.1389;1.5771;1.277;1.2674;0.53943;0.40758 +;-;-;-;-;-;-;- + 2067 + NaN NaN 194160.2 NaN 10294 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13241 59.623 NaN 818480 35 0 100410 0.261 + 4748 EYTAKIALL 9 73 511.2999066263948 1020.5852603195896 2 511.30023193359375 MULTI HCD FTMS 0 0 0 13238 306285.09375 0.38055268555933086 -3 0.06519317626953125 3 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 74.92900055777586 0.007493270374442853 1 [YE]TAK{I|L}A{I|L}{I|L} 9 0 + 62.132 0 0 6.0878 6.0878 85.915 0 0 0 17.86098023303616 5.994850021680094 5.994850021680094 5.994850021680094 0 1.4049471895720984 1.2218487496163564 0 0 + + [YE]TAK{I|L}A{I|L}{I|L};[YE]TAK{I|L}{I|L}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[DV]K{I|L}A{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[DV]K{I|L}{I|L}A{I|L} 6.0878;5.5004;2.5941;2.0067 +;-;-;- + 241 + NaN NaN 210234.2 NaN 10295 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13242 59.626 NaN 364140 35 0 26961 0.261 + 33544 YIKGEAQFQ 9 83 542.2774710116712 1082.5403890901423 2 542.76904296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YIKGEAQFQ_ REV__ENSG00000170954|ENST00000243643|ZNF415;REV__nc|ENSG00000170954|Q09FC8-2|ZNF415;REV__nc|ENSG00000170954|Q09FC8-4|ZNF415;REV__nc|ENSG00000170954|Q09FC8-6|ZNF415;REV__nc|ENSG00000170954|Q09FC8|ZNF415 25.399314129420986 0.14091189997036632 1 [Y{I|L}]VNTAEQ 8 -1 50.237 0 0 4.6406 0 0 0 161.07080699662598 161.07080699662598 11.950214375402105 0 0 0 0 0 1.2218487496163564 0.8684151806525389 0.3494850021680094 [Y{I|L}]VNTAEQ 4.6406 - 2874 NaN NaN 143835.2 NaN 10296 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13243 59.63 NaN 365300 35 0 32514 0.261 + 16778 LYDRETYP 8 64 528.752220293322 1055.489887653444 2 528.7523193359375 MULTI HCD FTMS 0 0 0 13238 62915.68359375 0.7454581496618865 5 -0.11719894409179688 5 Unmodified _LYDRETYP_ ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1;SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant 12.531546534597751 0.5015908124873912 1 [YT]P{[QG]|[NA]}DD{M(Oxidation (M))|F} 8 7 40.53 0 0 3.84 0 0 0 129.0977005166474 129.0977005166474 28.882104921644455 0 0 0 0 0.5 1.6989700043360187 0.28872548999643577 0.7059771852360797 [YT]P{[QG]|[NA]}DD{M(Oxidation (M))|F} 3.84 - 602 NaN NaN 159399.7 NaN 10297 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13244 59.633 NaN 191020 35 0 25948 0.262 + 25214 SAPPLSVPL 9 56 440.76034168382006 879.5061304344401 2 440.7603454589844 MULTI HCD FTMS 0 0 0 13238 49467.640625 0.4054019030243071 -5 0.11415863037109375 6 Unmodified _SAPPLSVPL_ REV__DACH2|p.N348Kfs*103|1|0.38|ENSG00000126733|chrX:86714657-86714658|-/A|frameshift_variant;REV__DACH2|p.T525Pfs*33|1|0.5|ENSG00000126733|chrX:86814717-86814717|A/-|frameshift_variant;REV__ENSG00000126733|ENST00000373125|DACH2;REV__nc|ENSG00000126733|Q96NX9-2|DACH2;REV__nc|ENSG00000126733|Q96NX9-3|DACH2;REV__nc|ENSG00000126733|Q96NX9-4|DACH2 21.74664581756881 0.17247014374749275 1 S[VP]{I|L} 4 -1 31.682 0 0 3.6023 0 0 465.25855460611825 0 465.25855460611825 0 14.69273760456403 0 0 0 1.4247425010840047 0 0.4247425010840047 0 S[VP]{I|L} 3.6023 + + 57 + NaN NaN 119474.9 NaN 10298 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13245 59.636 NaN 149050 35 0 12428 0.261 + 35851 YYQNYFEKL 9 51 634.3036450504073 1266.5927371676146 2 634.3031616210938 MULTI HCD FTMS 0 0 0 13238 61099.80859375 0.029881825126830037 42 -1.1162872314453125 7 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 59.368380827593164 0.01846506874148156 1 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 87.853 0 0 6.9362 6.9362 89.656 0 0 0 25.642492736872597 64.90926274548464 25.642492736872597 9.208187539523749 0 2.1677353201839438 2 0 0.7302046884880937 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L} 6.9362;6.2092 +;- + 82 NaN NaN 122724.7 NaN 10299 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13246 59.64 NaN 316580 35 0 59212 0.261 + 17445 LYSEVDVHF 9 66 554.7692175997386 1107.523882266277 2 554.7688598632812 MULTI HCD FTMS 0 0 0 13238 103644.7421875 0.3116197315431954 -3 0.06519317626953125 8 Unmodified _LYSEVDVHF_ ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 125.62461146993168 0.0008703235425492373 1 {I|L}YSEVDVH{M(Oxidation (M))|F} 9 0 + 108.16 0 0 9.7658 9.7658 97.697 0 0 0 98.26151861349551 14.09256854528806 14.09256854528806 32.58986910263616 0 2.2302046884880937 1.6989700043360187 0.805462187404089 0 + + {I|L}YSEVDVH{M(Oxidation (M))|F};[Y{I|L}]SEVDVH{M(Oxidation (M))|F};{I|L}YEE[TA]VH{M(Oxidation (M))|F};{I|L}YS[{I|L}V]DDH{M(Oxidation (M))|F} 9.7658;6.8232;5.4537;5.433 +;+;-;- + 256 + NaN NaN 138030.9 NaN 10300 2944 13238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13248 59.644 NaN 2019500 35 0 230770 0.327 + 27051 SYMGHFDLL 9 108 549.749911500793 1097.485270068386 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13247 1604220.875 0.15299513744634582 17 -0.43482208251953125 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 149.9946105101851 8.83195450578534E-06 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 92.793 0 0 8.4551 8.4551 93.362 0 0 0 41.791746928241125 9.889917747712644 9.889917747712644 10.779550148593472 0 2.579689690656103 2 1.6184151806525389 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}YS{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]YS{I|L} 8.4551;7.4729;5.7006;3.439;3.3681;3.1491;3.1221;2.7975;2.7051;2.5785 +;-;+;-;-;-;-;-;-;- + 2414 + NaN NaN 389786.7 NaN 10301 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13249 59.649 NaN 581550 35 0 145830 0.261 + 27412 SYTSGLETL 9 57 485.7401172817481 969.4656816302962 2 485.74005126953125 MULTI HCD FTMS 0 0 0 13247 330296.46875 0.31239203183727826 6 -0.12317276000976562 2 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 92.4914307365334 0.004460681868130716 1 {[{M(Oxidation (M))|F}C]|[YS]}TS{[VA]|[{I|L}G]}ET{I|L} 9 0 + 61.932 0 0 6.3883 6.3883 93.787 0 0 0 4.762036441594191 53.973630863505164 4.762036441594191 61.932431036945914 0 2.2059771852360797 0 1.2302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}TS{[VA]|[{I|L}G]}ET{I|L} 6.3883 + + 100 NaN NaN 182818.4 NaN 10302 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13250 59.652 NaN 1156500 35 0 84304 0.261 + 13168 KYLSVQGQLF 10 97 591.8294574746005 1181.644362016001 2 591.8295288085938 MULTI HCD FTMS 0 0 0 13247 706786 0.09465369460387588 -8 0.19947052001953125 3 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 110.79276546118962 5.020237097528524E-05 1 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 87.023 0 0 7.3646 7.3646 85.966 0 0 0 0.9519775112495239 16.532125137753454 0.9519775112495239 0.9519775112495239 0 2.4698565171985374 0.958607314841775 1.2288559305164173 0.6505149978319906 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GAAV{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GAAV{M(Oxidation (M))|F};{[QG]|[NA]}{I|L}KEGKY{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GAAV{M(Oxidation (M))|F} 7.3646;7.284;6.8647;6.589;6.5084;6.0892;5.1754;5.0949;4.8667;4.6756 -;+;-;-;-;-;-;-;-;- + 3350 NaN NaN 258582.2 NaN 10303 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13251 59.656 NaN 483130 35 0 98503 0.261 -1 FVVEHDFIM 9 80 576.7734505099356 1151.5323480866712 2 577.787353515625 MULTI HCD FTMS 0 0 0 13247 39047.328125 0.3218601834465841 19 -0.49057769775390625 4 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}{M(Oxidation (M))|F} 2 -1 26.013 0 0 2.259 0 0 873.4027605076587 0 873.4027605076587 0 12.201140738196015 0 0 0 0.6549471895720984 0 0 0 {I|L}{M(Oxidation (M))|F} 2.259 + + 48 + NaN NaN 167575.8 NaN 10304 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13252 59.659 NaN 326190 35 0 54339 0.263 + 12649 KWFFQKLRF 9 76 433.91669708106457 1298.7282618433937 3 433.916748046875 MULTI HCD FTMS 0 0 0 13247 132396.140625 0.17852903680254478 47 -1.2536849975585938 5 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 27.223235318498237 0.1251536255799991 1 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}[R{M(Oxidation (M))|F}] 9 0 + 55.173 0 0 4.2482 4.2482 80.746 0 0 0 49.48638135581298 0.7378621416091846 0.7378621416091846 1.249387366082999 0 0.805462187404089 0 0 0.3807196863200844 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}[R{M(Oxidation (M))|F}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}[R{M(Oxidation (M))|F}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}QK{I|L}[R{M(Oxidation (M))|F}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}[AG]K{I|L}[R{M(Oxidation (M))|F}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 4.2482;4.152;3.5392;3.443;2.2216;2.1254;1.5125;1.4163 +;-;-;-;-;-;-;- + 208 + NaN NaN 134900.2 NaN 10305 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13253 59.662 NaN 327520 35 0 28719 0.261 -1 EYMEHVYLI 9 78 606.7838077584753 1211.5530625837505 2 606.7985229492188 MULTI HCD FTMS 0 0 0 13247 23754.97265625 0.03287880653635717 41 -1.0866928100585938 6 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 23.1484247019978 0.1603590852062899 1 RNE{M(Oxidation (M))|F}EE{I|L} 7 -1 41.441 0 0 3.4205 0 0 276.14729506660314 0 276.14729506660314 0 24.52975458406694 0 0 0 0 0 0.4247425010840047 0.3494850021680094 RNE{M(Oxidation (M))|F}EE{I|L} 3.4205 - 411 NaN NaN 143978.5 NaN 10306 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13254 59.666 NaN 84855 35 0 7508.6 0.261 -1 NYAWVYYHM 9 43 631.7688949312696 1261.5232369293392 2 631.7689819335938 MULTI HCD FTMS 0 0 0 13247 16984.126953125 0.059023501633677096 35 -0.9264183044433594 7 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 38.15118350030904 0.07383188072201104 1 [YN]AW[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]} 9 -1 + 48.591 0 0 3.8518 3.8518 89.368 0 0 0 40.51924358097537 0.4036245867396815 0.4036245867396815 48.591212212983805 0 1.5 1.6989700043360187 0 0 [YN]AW[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]} 3.8518 + + 46 + NaN NaN 94205.1 NaN 10307 2945 13247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13256 59.67 NaN 940450 35 0 184900 0.327 + 8782 HIIDDALVRL 10 103 582.8400430246339 1163.6655331160678 2 582.8400268554688 MULTI HCD FTMS 0 0 0 13255 412947.875 0.6622331802059898 3 -0.06154632568359375 1 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 81.9152076656658 0.003466872489127602 1 {I|L}H{I|L}DD{I|L}AVR{I|L} 10 4 + 94.867 0 0 8.1525 8.1525 87.212 0 0 0 3.2390874094431865 9.667730834301068 3.2390874094431865 0.9640156839957825 0 2.9361818737241734 1.6989700043360187 0.8494850021680094 0.23965182871044374 {I|L}H{I|L}DD{I|L}AVR{I|L};{I|L}H{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}DDA{I|L}VR{I|L};[H{I|L}]{I|L}DDA{I|L}VR{I|L};{I|L}H{I|L}D[TP]TVR{I|L};H{I|L}{I|L}D[TP]TVR{I|L};{I|L}H{I|L}S[EP]TVR{I|L};H{I|L}{I|L}S[EP]TVR{I|L};[H{I|L}]{I|L}ADD{I|L}VR{I|L} 8.1525;8.0696;7.8741;7.7913;7.3217;6.3701;6.0918;5.3364;5.0581;4.7424 -;-;-;+;+;-;-;-;-;- + 1289 + NaN NaN 237657.9 NaN 10308 2946 13255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13257 59.675 NaN 919930 35 0 136140 0.261 + 5570 FLLPLRAPF 9 98 537.3315202458726 NaN 0 537.3214111328125 PEAK HCD FTMS 0 0 0 13255 23408.015625 0.72699470960772 -2 0.055652618408203125 2 Unmodified _FLLPLRAPF_ ENSG00000168348|ENST00000307169|INSM2 18.13498045792455 0.19991664011725976 1 {I|L}P 2 7 12.959 0 0 1.2081 0 0 697.4329197120472 162.0560244195922 859.4889441316394 0 0 0 0 0 0.5 0 0 0 + {I|L}P 1.2081 + + 47 + NaN NaN 228330.3 NaN 10309 2946 13255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13258 59.678 NaN 1163800 35 0 261950 0.261 + 33509 YIDTHTTLL 9 89 538.7846083449836 1075.554663756767 2 538.7846069335938 MULTI HCD FTMS 0 0 0 13255 460387.84375 0.6842265200323879 -1 0.026058197021484375 3 Unmodified _YIDTHTTLL_ tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1 26.88365393820708 0.12808753336095696 1 TT{I|L}{I|L} 4 5 41.899 0 0 3.8956 0 0 629.2806874005875 0 629.2806874005875 0 22.233200343714326 0 0 0 0.8494850021680094 0 0.9247425010840047 0 + TT{I|L}{I|L} 3.8956 + + 282 NaN NaN 260748.8 NaN 10310 2946 13255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13259 59.682 NaN 375750 35 0 54811 0.261 + 24598 RYLPQCSYF 9 74 588.7792236612701 1175.54389438934 2 588.7791137695312 MULTI HCD FTMS 0 0 0 13255 106084.53125 0.5122328669622435 1 -0.02272796630859375 4 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 43.77239144664712 0.04802738721622131 1 TCSY{M(Oxidation (M))|F} 5 5 47.607 0 0 4.0498 0 0 556.3198109357437 0 556.3198109357437 0 35.924778212679485 0 0 0 0.9247425010840047 0 0.8807196863200843 0 TCSY{M(Oxidation (M))|F} 4.0498 - 294 NaN NaN 148296.9 NaN 10311 2946 13255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13260 59.685 NaN 1080700 35 0 513290 0.262 + -1 LWQKKMISM 9 74 598.8120313520844 1195.6095097709688 2 598.8121948242188 MULTI HCD FTMS 0 0 0 13255 154281.84375 0.8775187129656579 -2 0.055652618408203125 5 2 Oxidation (M) _LWQKKM(Oxidation (M))ISM(Oxidation (M))_ REV__ENST00000272091.7_1_1:226180251-226183014:-|nuORF 9.38312468134398 0.279288223203164 1 {I|L}RN 3 -1 24.693 0 0 2.0653 0 0 0 809.3617037408811 809.3617037408811 9.710040265111564 0 0 0 0 0 0 0 0 {I|L}RN 2.0653 - 200 + NaN NaN 247958.4 NaN 10312 2946 13255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13261 59.688 NaN 790240 35 0 93174 0.262 + 19361 NPDPAVYQL 9 87 508.755906186611 1015.497259440022 2 508.7555236816406 MULTI HCD FTMS 0 0 0 13255 93866.0703125 0.17100206781890365 8 -0.18549728393554688 6 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 21.536976647645854 0.1742816388551942 1 CYQ{I|L} 4 6 36.52 0 0 3.5963 0 0 490.2731190412125 0 490.2731190412125 0 13.33231929704656 0 0 0 0.8807196863200843 0 0 0 CYQ{I|L} 3.5963 - 531 NaN NaN 204614.2 NaN 10313 2946 13255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13263 59.693 NaN 921170 35 0 123600 0.327 -1 0 98 617.3170389703915 1232.619525007583 2 617.3167114257812 MULTI HCD FTMS 0 0 0 13262 533455.25 0.23924321494061304 9 -0.218414306640625 1 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 10 -1 90.822 0 0 7.3682 0 0 0 144.0467701697352 144.0467701697352 63.51448731351388 0 0 0 0 2.2856668758921828 1.6989700043360187 1.205112052208703 1.4802046884880937 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 7.3682 - 3103 NaN NaN 227176.7 NaN 10314 2947 13262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13264 59.698 NaN 234750 35 0 14042 0.261 -1 APFKFDMEL 9 67 557.2678406421421 1112.5211283510841 2 557.2679443359375 MULTI HCD FTMS 0 0 0 13262 101564.84375 0.14050678113309836 13 -0.3365898132324219 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 30.7034409873982 0.10802119112323902 1 C{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 6 -1 43.008 0 0 3.8658 0 0 340.24778945136876 0 340.24778945136876 0 15.585003915861648 0 0 0 0.8807196863200843 0 0 0 C{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 3.8658 - 145 NaN NaN 121876.1 NaN 10315 2947 13262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13265 59.701 NaN 283080 35 0 40703 0.261 + -1 TCRLNLHWFFF 11 58 514.2560033142219 1539.7461805428654 3 514.2557373046875 MULTI HCD FTMS 0 0 0 13262 106407.71875 1 0 0 3 Carbamidomethyl (C) _TC(Carbamidomethyl (C))RLNLHWFFF_ REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF 4.11662792887243 0.40086653484894175 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 41.198 0 0 2.6756 0 0 1114.5151757594654 0 1114.5151757594654 0 39.20818753952375 0 0 0 1.5 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6756 - 37 + NaN NaN 128299.3 NaN 10316 2947 13262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13266 59.704 NaN 397650 35 0 32750 0.261 + 9894 IASLDSPQL 9 86 472.2583923526683 942.5022317721366 2 472.2580871582031 MULTI HCD FTMS 0 0 0 13262 115806.5 0.8020019490566034 -1 0.02272796630859375 4 Unmodified _IASLDSPQL_ ENSG00000092295|ENST00000206765|TGM1;nc|ENSG00000092295|P22735-2|TGM1 86.33184430468982 0.004622086694044132 1 SS{I|L}DSPQ{I|L} 8 2 44.797 0 0 4.753 0 0 97.1029371901695 0 97.1029371901695 0 6.930087952002147 0 0 0 1.9916440611282624 0 0.23965182871044374 0.9163865622122672 SS{I|L}DSPQ{I|L} 4.753 - 707 + NaN NaN 142257.9 NaN 10317 2947 13262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13268 59.709 NaN 18301000 35 0 3274500 0.327 + 5274 FFFFLFSFLFF 11 95 503.592996758803 1507.757160876609 3 503.5935974121094 MULTI HCD FTMS 0 0 0 13267 8159966 0.8994319556498837 1 -0.022769927978515625 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 28.233623360808718 0.2127292296419295 1 {M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 83.498 0 0 5.5379 0 0 183.08857644230858 0 183.08857644230858 0 70.77279794953029 0 0 0 2.8494850021680094 0 0.7887254899964358 0.3494850021680094 {M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5379 - 987 + NaN NaN 811776.9 NaN 10318 2948 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13269 59.714 NaN 736720 35 0 100730 0.261 + 18847 NAELWQVSW 9 84 566.7748582236685 1131.535163514137 2 566.7747192382812 MULTI HCD FTMS 0 0 0 13267 301473.84375 0.9540453976320256 42 -1.1397933959960938 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 1 [YR]{M(Oxidation (M))|F}STSVSW 9 6 + 71.225 0 0 6.2946 6.2946 85.388 0 0 0 9.901727763731856 56.30362997901186 9.901727763731856 3.9215905896025305 0 2.492992819099939 0 0.6694451763165201 0.6747425010840047 [YR]{M(Oxidation (M))|F}STSVSW;[YR]TGTYVSW;[YR]{M(Oxidation (M))|F}A{[CT]|[{M(Oxidation (M))|F}G]}VS{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}[H{I|L}]{[CP]|[EA]}SVSW;[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS{[DA]|[EG]};[YR]{M(Oxidation (M))|F}STSW[VS];[YR]TGTYW[VS];[YR]TGTS[YV]W;[YR]{M(Oxidation (M))|F}Y[NP]S[VS];{[CT]|[{M(Oxidation (M))|F}G]}[YV]A[R{M(Oxidation (M))|F}]S{[DA]|[EG]} 6.2946;5.948;4.646;4.3725;4.0796;3.919;3.5724;3.2399;3.02;2.9589 -;-;-;-;-;-;-;-;-;- 1219 NaN NaN 203859 NaN 10319 2948 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13270 59.717 NaN 210600 35 0 22210 0.261 + 9836 HYQDVSCLQF 10 58 620.2768742249386 1238.5391955166772 2 620.27685546875 MULTI HCD FTMS 0 0 0 13267 88785.6875 0.363866587894747 15 -0.39617156982421875 3 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 24.881564428377168 0.27837825820855233 1 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 9 5 64.486 0 0 5.2066 0 0 241.14251906562657 0 241.14251906562657 0 48.0842309438912 0 0 0 1.2614393726401687 0 0.4247425010840047 0 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 5.2066 - 269 NaN NaN 119606.7 NaN 10320 2948 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13271 59.72 NaN 156650 35 0 17517 0.264 -1 WIMMKMLVQ 9 49 409.86957775862135 1226.586903876064 3 409.86895751953125 MULTI HCD FTMS 0 0 0 13267 53083.23046875 0.3810379509599618 20 -0.5438499450683594 4 3 Oxidation (M) _WIM(Oxidation (M))M(Oxidation (M))KM(Oxidation (M))LVQ_ ENST00000216218.7_1_22:41228589-41228634:-|nuORF 2.735195868890462 0.3302822318919627 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3851 0 0 1061.5079376668828 0 1061.5079376668828 0 0.7918124604762511 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3851 + + 17 + NaN NaN 104976.2 NaN 10321 2948 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13272 59.724 NaN 189220 35 0 12346 0.261 + 32446 WDDRMHTVK 9 73 594.2840162259035 NaN 0 594.283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _WDDRMHTVK_ ENSG00000157423|ENST00000393567|HYDIN 4.3292370932331545 0.2742679634796037 1 {I|L} 1 9 6.9897 0 0 0.58908 0 0 132.10032238154628 938.346929345771 1070.4472517273173 0 0 0 0 0 0 0 0 0 {I|L} 0.58908 - 47 + NaN NaN 117286.3 NaN 10322 2948 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13273 59.727 NaN 40678 35 0 4272.7 0.263 + -1 RAGIHHGL 8 29 451.7513732910156 NaN 0 451.7513732910156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RAGIHHGL_ REV__ENSG00000183091|ENST00000397345|NEB;REV__ENSG00000183091|ENST00000397345|NEB;REV__ENSG00000183091|ENST00000397345|NEB;REV__ENSG00000183091|ENST00000397345|NEB;REV__ENSG00000183091|ENST00000397345|NEB;REV__ENSG00000183091|ENST00000397345|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.R2556H|1|0.2|ENSG00000183091|chr2:151644107-151644107|C/T|missense_variant;REV__NEB|p.R2799C|1|0.34|ENSG00000183091|chr2:151640645-151640645|G/A|missense_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant 0.7936320650641473 0.38822285293237185 1 K 1 -1 0.088644 0 0 0.0098331 0 0 509.28553207832186 261.0876864068969 770.3732184852188 0 0 0 0 0 0 0 0 0 K 0.0098331 - 1 + NaN NaN 85594.8 NaN 10323 2948 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13275 59.732 NaN 1131100 35 0 333690 0.327 + 31999 VYPLMKEYF 9 71 603.2993101230447 1204.5840673128894 2 603.29931640625 MULTI HCD FTMS 0 0 0 13274 588367.625 0.14021108243240055 39 -1.0580787658691406 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 60.07390631473393 0.0174780869009295 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 77.396 0 0 6.4251 6.4251 91.329 0 0 0 17.820998171794514 16.53212513775344 16.53212513775344 16.945830421822663 0 1.8494850021680094 2 0.3494850021680094 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YQ][Y{I|L}] 6.4251;5.0183;4.9457;4.942;4.5316;3.2249 -;-;-;-;-;- 380 NaN NaN 264885.3 NaN 10324 2949 13274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13276 59.736 NaN 586670 35 0 28605 0.261 + 20994 PLLSTRETF 9 80 532.2940724525989 1062.5735919719978 2 532.282470703125 MULTI HCD FTMS 0 0 0 13274 17298.279296875 0.35306458380788147 -6 0.14002227783203125 2 Unmodified _PLLSTRETF_ ENST00000374767.4_1_9:107509978-107510098:+|nuORF 13.50788311687929 0.24365122550260465 1 VA{M(Oxidation (M))|F}{[ET]|[MV]}{M(Oxidation (M))|F} 6 6 27.497 0 0 2.5877 0 0 350.26242427933295 0 350.26242427933295 0 1.5443874496362042 0 0 0 0 0 0.535666875892183 0 VA{M(Oxidation (M))|F}{[ET]|[MV]}{M(Oxidation (M))|F} 2.5877 - 431 + NaN NaN 179823.8 NaN 10325 2949 13274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13277 59.74 NaN 281340 35 0 28463 0.261 + 4675 EYPDRIMNTF 10 60 643.2977950714372 1284.5810372096744 2 643.298095703125 MULTI HCD FTMS 0 0 0 13274 93391.0234375 0.029999907144735757 35 -0.9501266479492188 3 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 80.6760300276096 0.004935188130137892 1 [YE]AP{[TV]|[{I|L}S]}{I|L}MN 9 5 45.824 0 0 3.5673 0 0 0 263.10337244205317 263.10337244205317 24.37076236157729 0 0 0 0 1.7984550065040281 1.6989700043360187 0.3494850021680094 0.3252574989159953 [YE]AP{[TV]|[{I|L}S]}{I|L}MN 3.5673 - 163 + NaN NaN 125804.8 NaN 10326 2949 13274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13278 59.743 NaN 200900 35 0 30806 0.262 + 23921 RTNDFRQF 8 67 542.2685629019255 NaN 0 542.2676391601562 PEAK HCD FTMS 0 0 0 13274 40441.41015625 0.5877690790460486 1 -0.01944732666015625 4 Unmodified _RTNDFRQF_ REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF 13.90604991867851 0.38822285293237185 1 NT{M(Oxidation (M))|F}AG 5 -1 29.24 0 0 2.7011 0 0 156.09979562631344 433.1725252740844 589.2723209003979 0 0 0 0 0 0.9247425010840047 0 0 0.3054621874040891 NT{M(Oxidation (M))|F}AG 2.7011 - 260 + NaN NaN 121501.1 NaN 10327 2949 13274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13279 59.747 NaN 68814 35 0 5741.9 0.262 + 1673 CEGHNSDF 8 49 454.6624165325097 NaN 0 454.2153015136719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _CEGHNSDF_ ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 4.75600775471527 0.38822285293237185 1 A 1 8 1.5938 0 0 0.17566 0 0 290.99431441091946 542.2539156549436 833.248230065863 0 0 0 0 0 0 0 0 0 A 0.17566 - 2 + NaN NaN 90072.6 NaN 10328 2949 13274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13281 59.751 NaN 1337700 35 0 201260 0.327 + 4749 EYTAKIALL 9 78 511.2999066263948 1020.5852603195896 2 511.2998046875 MULTI HCD FTMS 0 0 0 13280 801314.5625 0.9956162247519605 3 -0.0684051513671875 1 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 114.6490535036381 0.0021834323520089267 1 [YE]TAK{I|L}A{I|L}{I|L} 9 0 + 73.849 0 0 7.2359 7.2359 91.679 0 0 0 1.252514336751048 1.252514336751048 1.252514336751048 11.760912590556806 0 2.742992819099939 1.3979400086720375 2.6989700043360187 0 + + [YE]TAK{I|L}A{I|L}{I|L};[YE]TAK{I|L}{I|L}A{I|L};[YT]EAK{I|L}A{I|L}{I|L};[YT]EAK{I|L}{I|L}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[DV]K{I|L}A{I|L}{I|L};[{I|L}A][K{I|L}][TA]{I|L}[YE] 7.2359;6.0836;5.1313;3.9789;2.8202;0.0067987 +;-;-;-;-;- + 378 NaN NaN 284718.7 NaN 10329 2950 13280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13282 59.756 NaN 475100 35 0 43669 0.261 + 32242 VYTTTVHWL 9 82 560.2953654435589 1118.5761779539177 2 560.2954711914062 MULTI HCD FTMS 0 0 0 13280 204824.265625 0.19923864749959525 15 -0.41973876953125 2 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 67.34385681178166 0.00994769994983633 1 TH{[TV]|[{I|L}S]}TT{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 8 6 41.713 0 0 3.7291 0 0 216.12939650703282 0 216.12939650703282 0 23.12977812912628 0 0 0 1.6307196863200843 0 0.3494850021680094 0 TH{[TV]|[{I|L}S]}TT{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3.7291 - 814 NaN NaN 158976 NaN 10330 2950 13280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13283 59.759 NaN 582790 35 0 25871 0.261 + 20995 PLLSTRETF 9 93 532.2940724525989 1062.5735919719978 2 532.2821044921875 MULTI HCD FTMS 0 0 0 13280 22249.330078125 0.4541174488642058 -5 0.10705184936523438 3 Unmodified _PLLSTRETF_ ENST00000374767.4_1_9:107509978-107510098:+|nuORF 18.13498045792455 0.20367413111508956 1 VA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 6 6 32.607 0 0 3.0687 0 0 350.26404939167804 0 350.26404939167804 0 15.852984742561311 0 0 0 0 0 0.5774509799928715 0 VA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 3.0687 - 779 + NaN NaN 175098.5 NaN 10331 2950 13280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13284 59.763 NaN 882480 35 0 316380 0.261 -1 KYMYFTVVM 9 95 599.2878239079769 1196.5610948827537 2 599.2877807617188 MULTI HCD FTMS 0 0 0 13280 31204.1640625 0.40044597006761035 1 -0.01612091064453125 4 Oxidation (M) _KYMYFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 17.11289562659939 0.2125047172822487 1 NR[WE]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F} 9 -1 + 27.157 0 0 2.2696 2.2696 79.951 0 0 0 9.382031886892928 4.1981068421942105 4.1981068421942105 2.648094455769641 0 1.1989700043360187 0 0 0.3494850021680094 NR[WE]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};MYKY{M(Oxidation (M))|F}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};NR[WE]{M(Oxidation (M))|F}{[DA]|[EG]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};NR{[HG]|PP}CNP{I|L}{[WT]|[RM]};MYKY{M(Oxidation (M))|F}{[DA]|[EG]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[RP]PY{[SA]|[TG]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F};NR{[HG]|PP}CNPR{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};NRDDYVR{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};NR[WE]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]};MYKY{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]} 2.2696;2.0483;1.1609;1.0863;0.93959;0.91588;0.91568;0.72981;0.72391;0.5026 -;-;-;-;-;-;-;-;-;- 775 + NaN NaN 217828.2 NaN 10332 2950 13280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13286 59.768 NaN 822880 35 0 62745 0.327 + 13291 KYMDVQFDF 9 82 604.7681727029972 1207.5217924727942 2 604.7677612304688 MULTI HCD FTMS 0 0 0 13285 353217.46875 0.08807288961536841 27 -0.7542266845703125 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 74.19965305603844 0.007729275404663812 1 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 3 + 64.478 0 0 5.3397 5.3397 87.654 0 0 0 5.0565842292838425 38.44065150617125 5.0565842292838425 9.420080530223132 0 1.5 1.3979400086720375 0.3252574989159953 0.6382104921644451 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{[DS]|[MA]|[CV]|TT}{[MG]|[TS]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q[MT]{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F} 5.3397;4.5596;4.3847;4.0522;3.6221;3.4319;3.1081;2.8022;2.6693;2.6185 -;-;-;-;-;-;-;-;-;- 1894 NaN NaN 214702.8 NaN 10333 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13287 59.772 NaN 575630 35 0 104280 0.261 + 17446 LYSEVDVHF 9 80 554.7692175997386 1107.523882266277 2 555.2708740234375 MULTI HCD FTMS 0 0 0 13285 181502.296875 0.6261375820744081 2 -0.05228424072265625 2 Unmodified _LYSEVDVHF_ ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 147.8311659463005 1.1118996804784084E-05 1 {I|L}YSEVDVH{M(Oxidation (M))|F} 9 0 + 110.56 0 0 9.9824 9.9824 97.129 0 0 0 92.57638152291939 16.478174818886373 16.478174818886373 22.725701246523045 0 2.4916440611282624 1.6989700043360187 0.6747425010840047 0 + + {I|L}YSEVDVH{M(Oxidation (M))|F};[Y{I|L}]SEVDVH{M(Oxidation (M))|F};{I|L}Y{[QN]|[E{I|L}]|[KN]}D[TA]H{M(Oxidation (M))|F};{I|L}YEE[TA]VH{M(Oxidation (M))|F};{I|L}YEEV[TA]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EVDVH{M(Oxidation (M))|F};{I|L}Y{[QN]|[E{I|L}]|[KN]}D[HA]T{M(Oxidation (M))|F};{I|L}YEEV[HA]T{M(Oxidation (M))|F};{I|L}{[WT]|[RM]}{[QS]|[NT]}EPT{M(Oxidation (M))|F};[Y{I|L}]G[WE]{[CP]|[EA]}Q{I|L} 9.9824;7.9304;5.6295;5.5984;5.5626;5.2423;4.6959;4.6291;3.3311;1.6947 +;+;-;-;-;-;-;-;-;- + 958 + NaN NaN 184946 NaN 10334 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13288 59.775 NaN 593150 35 0 78546 0.263 + 7059 FQLFVYEQF 9 71 407.5375394879178 1219.5907890639535 3 407.53759765625 MULTI HCD FTMS 0 0 0 13285 120956.4765625 0.7316939564283171 1 -0.036098480224609375 3 Unmodified _FQLFVYEQF_ REV__ENSG00000184344|ENST00000329913|GDF3 10.150570793230772 0.27265765907388223 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}KE 9 -1 + 22.047 0 0 1.8077 1.8077 86.168 0 0 0 2.5828746115869485 1.4736308635051678 1.4736308635051678 16.923487412610356 0 0.1989700043360188 1.5228787452803376 0 0.4247425010840047 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}KE;K{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K][KC];{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K][KC];K{M(Oxidation (M))|F}C(Carbamidomethyl (C))[YK]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KC] 1.8077;0.42009;0.37714;0.013747 -;-;-;- 384 NaN NaN 176410.7 NaN 10335 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13289 59.779 NaN 574880 35 0 95168 0.261 + 21039 PLSPSSDLQ 9 90 472.2402205445312 942.4658881558624 2 472.24041748046875 MULTI HCD FTMS 0 0 0 13285 222496.609375 0.468481813515472 -4 0.0743865966796875 4 Unmodified _PLSPSSDLQ_ REV__ENSG00000138606|ENST00000690270|SHF;REV__nc|ENSG00000138606|Q7M4L6|SHF 45.69961567697781 0.039180348357221985 1 P{I|L}SSDSPQ{I|L} 9 -1 + 67.199 0 0 7.1302 7.1302 92.69 0 0 0 17.073259432077563 17.073259432077563 17.073259432077563 17.073259432077563 0 1.2302046884880937 1.6989700043360187 0 0.7887254899964358 P{I|L}SSDSPQ{I|L};[{I|L}P]SSPSDQ{I|L};PS{I|L}SDSPQ{I|L};[{I|L}P]E[QT]DQ{I|L};PSS{I|L}DSPQ{I|L};[{I|L}P]EAASDQ{I|L};[{I|L}P][VG]DSDQ{I|L};[{I|L}P]SSPSD[AG]{I|L};[{I|L}P]E[QT]D[AG]{I|L};{[QN]|[E{I|L}]|[KN]}P[QT]DQ{I|L} 7.1302;5.3186;5.0081;4.9696;4.8165;4.6988;4.4905;4.0506;3.9869;3.8796 -;-;-;-;-;-;-;-;-;- 1149 + NaN NaN 168354.2 NaN 10336 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13290 59.782 NaN 121760 35 0 9039.9 0.261 + 35852 YYQNYFEKL 9 56 634.3036450504073 1266.5927371676146 2 634.3032836914062 MULTI HCD FTMS 0 0 0 13285 100693.4609375 0.049245725320610126 49 -1.3554725646972656 5 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 45.739877483867886 0.03899552410870734 1 YYQ[YN]{M(Oxidation (M))|F}EK{I|L} 9 0 + 67.113 0 0 5.2987 5.2987 86.751 0 0 0 46.14393726401687 9.889917747712644 9.889917747712644 9.208187539523749 0 2.274227503252014 2 0 0.4247425010840047 + + YYQ[YN]{M(Oxidation (M))|F}EK{I|L};YY[AG][YN]{M(Oxidation (M))|F}EK{I|L} 5.2987;4.5717 +;- + 41 + NaN NaN 99246.1 NaN 10337 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13291 59.785 NaN 196120 35 0 31721 0.264 + 20464 PATPVSVPL 9 55 440.76034168382006 879.5061304344401 2 440.760498046875 MULTI HCD FTMS 0 0 0 13285 90394.3359375 0.7408082404714651 2 -0.05228424072265625 6 Unmodified _PATPVSVPL_ REV__ENSG00000187323|ENST00000442544|DCC;REV__ENST00000579702.1_1_18:51025702-51053171:+|nuORF;REV__ROCK1-DCC|1|fusion 32.30548876998284 0.10066689432505688 1 S[VP]{I|L} 4 -1 30.177 0 0 3.4312 0 0 465.25904288736825 0 465.25904288736825 0 15.573193899842437 0 0 0 1.4247425010840047 0 0.2742275032520141 0 S[VP]{I|L} 3.4312 + + 50 + NaN NaN 129161.1 NaN 10338 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13292 59.789 NaN 559430 35 0 84716 0.261 -1 RMLIDCLYIFF 11 56 497.58968177416523 1489.7472159226957 3 497.92333984375 MULTI HCD FTMS 0 0 0 13285 70350.046875 0.696584688885657 6 -0.17357635498046875 7 Carbamidomethyl (C) _RMLIDC(Carbamidomethyl (C))LYIFF_ L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|43|3|anti-sense 5.868138319507137 0.39318500527288264 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.4298 0 0 1064.5151770256432 0 1064.5151770256432 0 15.228787452803374 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4298 + + 44 NaN NaN 169511.5 NaN 10339 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13293 59.792 NaN 214000 35 0 15867 0.261 + 5518 FLDGNEMTL 9 54 528.2393688955063 1054.4641848578126 2 528.2394409179688 MULTI HCD FTMS 0 0 0 13285 112597.8203125 0.6914753175936109 4 -0.1145477294921875 8 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 49.55428908609986 0.03219431099695407 1 [YT]PANE{M(Oxidation (M))|F}T{I|L} 9 4 + 52.277 0 0 4.9577 4.9577 84.575 0 0 0 7.269987279362624 14.09256854528806 7.269987279362624 7.269987279362624 0 1.024227503252014 1.5228787452803376 0 0.3494850021680094 [YT]PANE{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DGNE{M(Oxidation (M))|F}T{I|L};[YT]PAGGE{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DGGGE{M(Oxidation (M))|F}T{I|L};[YT]PA{[CP]|[EA]}[CS]T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DG{[CP]|[EA]}[CS]T{I|L};M[YK]{[CP]|[EA]}GDE{I|L} 4.9577;4.2682;3.753;3.0635;1.6204;0.93091;0.77604 -;+;-;-;-;-;- + 380 NaN NaN 115110.1 NaN 10340 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13294 59.796 NaN 415410 35 0 174710 0.261 -1 FPAGYMYPSM 10 75 598.243611247786 1194.472669562372 2 598.2420043945312 MULTI HCD FTMS 0 0 0 13285 85960.90625 0.23844816499518118 -69 1.7536430358886719 9 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 37.97399986684836 0.1629881689457739 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 43.51 0 0 3.6426 0 0 535.2427235334 0 535.2427235334 0 36.519906923290684 0 0 0 1.579689690656103 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.6426 + + 145 NaN NaN 146101.4 NaN 10341 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13295 59.799 NaN 76085 35 0 7536.5 0.261 + 21414 PVQYVHNLKF 10 36 622.8442972825084 NaN 0 622.7493286132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _PVQYVHNLKF_ REV__ENST00000473429.5_1_1:110584363-110592127:+|nuORF;REV__nc|ENSG00000143093|Q5VSL9-3|STRIP1 1.4819007175156935 0.33891598740166873 1 N 1 -1 1.5938 0 0 0.12815 0 0 406.2726877273229 720.3543795221311 1126.627067249454 0 0 0 0 0 0 0 0 0 N 0.12815 + + 1 + NaN NaN 99050.8 NaN 10342 2951 13285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13297 59.804 NaN 8787800 35 0 647230 0.327 + 13169 KYLSVQGQLF 10 121 591.8294574746005 1181.644362016001 2 591.8300170898438 MULTI HCD FTMS 0 0 0 13296 7356642 0.9852110047143643 -1 0.036098480224609375 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 176.4269993864032 3.3074236493791942E-12 1 [Y{I|L}]KSVQGQ{I|L}{M(Oxidation (M))|F} 10 2 + 96.137 0 0 8.1359 8.1359 90.248 0 0 0 7.8692517469114875 14.178703500216088 7.8692517469114875 7.8692517469114875 0 2.6479400086720375 1.154901959985743 1.3851518780601921 1.031234684152075 [Y{I|L}]KSVQGQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YSVQGQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KSVQG[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KSVQAN{I|L}{M(Oxidation (M))|F};[YK]{I|L}SVQGQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]SKVQGQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KSVQGQ{M(Oxidation (M))|F}{I|L};[K{I|L}]YSVQG[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YSVQAN{I|L}{M(Oxidation (M))|F};[Y{I|L}]KSVQAGG{I|L}{M(Oxidation (M))|F} 8.1359;7.4699;7.3603;7.3328;7.2822;7.2296;6.936;6.6943;6.6668;6.5572 -;-;-;-;+;-;-;-;-;- + 21110 NaN NaN 886029.8 NaN 10343 2952 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13298 59.808 NaN 1504300 35 0 160770 0.261 + 27052 SYMGHFDLL 9 107 549.749911500793 1097.485270068386 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13296 835918.8125 0.07972188593570301 24 -0.6690559387207031 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 111.28704002717404 0.0027322905094575235 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 79.356 0 0 7.2307 7.2307 91.415 0 0 0 44.940621858497614 9.889917747712644 9.889917747712644 10.779550148593486 0 2.4604093769761874 2 1.0629529932484498 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHVE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHVE{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L} 7.2307;6.2485;6.0663;5.1976;4.9518;4.728;3.5068;3.4699;3.374;3.2685 +;-;+;-;-;-;-;-;-;- + 2077 + NaN NaN 315354.8 NaN 10344 2952 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13299 59.812 NaN 175140 35 0 40569 0.261 + 27413 SYTSGLETL 9 37 485.7401172817481 969.4656816302962 2 485.74017333984375 MULTI HCD FTMS 0 0 0 13296 93667.7890625 0.08859032327435369 13 -0.3675193786621094 3 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 32.30548876998284 0.10066689432505688 1 ET{I|L} 3 6 36.198 0 0 3.7338 0 0 608.2806524753711 0 608.2806524753711 0 36.197887582883936 0 0 0 1 0 0 0 + ET{I|L} 3.7338 + + 9 NaN NaN 100455.5 NaN 10345 2952 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13300 59.815 NaN 684430 35 0 114660 0.261 + 16773 LYDPVISKL 9 82 524.3079008486018 1046.6012487640035 2 524.3078002929688 MULTI HCD FTMS 0 0 0 13296 275375.5 0.8537397793863684 -2 0.052219390869140625 4 Unmodified _LYDPVISKL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1 65.47368725323818 0.010552856507075443 1 {I|L}YD[VP]{I|L}SK{I|L} 9 0 + 86.067 0 0 8.2234 8.2234 92.926 0 0 0 58.85583025471625 7.632192780232785 7.632192780232785 10.426740567922437 0 2.6237125054200234 2 1.1747425010840047 0 + + {I|L}YD[VP]{I|L}SK{I|L};[Y{I|L}]D[VP]{I|L}SK{I|L};{I|L}YD[VP]TVK{I|L};{I|L}Y[VP]D{I|L}SK{I|L};{I|L}YD[VP]TKV{I|L};{I|L}Y[VP]DTVK{I|L};{I|L}Y[VP]DTKV{I|L};[Y{I|L}]D[VP][KS]{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VP]{I|L}SK{I|L};[Y{I|L}]N[{I|L}A]EV{I|L}{I|L} 8.2234;7.2272;6.9559;6.7507;6.3818;5.4831;4.9091;4.404;4.3826;2.2382 +;+;-;-;-;-;-;-;-;- + 530 + NaN NaN 193203.4 NaN 10346 2952 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13302 59.82 NaN 1085200 35 0 231440 0.327 + 33510 YIDTHTTLL 9 83 538.7846083449836 1075.554663756767 2 538.78466796875 MULTI HCD FTMS 0 0 0 13301 481594.53125 0.715743811782208 6 -0.18705368041992188 1 Unmodified _YIDTHTTLL_ tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1 32.30548876998284 0.10066689432505688 1 TT{I|L}{I|L} 4 5 46.983 0 0 4.3682 0 0 629.2839222638687 0 629.2839222638687 0 27.690775249321078 0 0 0 1.2302046884880937 0 0.9247425010840047 0 + TT{I|L}{I|L} 4.3682 + + 370 NaN NaN 247377.3 NaN 10347 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13303 59.824 NaN 645710 35 0 66821 0.261 -1 0 97 617.3170389703915 1232.619525007583 2 617.3165283203125 MULTI HCD FTMS 0 0 0 13301 333876.5625 0.14973646281636654 15 -0.4332275390625 2 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 10 -1 60.865 0 0 4.9379 0 0 0 144.0468253377202 144.0468253377202 30.66569691289538 0 0 0 0 1.785666875892183 1.5228787452803376 0.7134679910804405 1.4604093769761874 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}KGAPDP 4.9379 - 1810 NaN NaN 189822.4 NaN 10348 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13304 59.828 NaN 595450 35 0 85811 0.261 + 8783 HIIDDALVRL 10 99 582.8400430246339 1163.6655331160678 2 582.8396606445312 MULTI HCD FTMS 0 0 0 13301 174983.109375 0.28061561281490743 10 -0.2855491638183594 3 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 75.5705956163825 0.010984675281887875 1 [H{I|L}]{I|L}DDA{I|L}VR{I|L} 10 0 + 74.901 0 0 6.4366 6.4366 85.958 0 0 0 4.624759215276626 4.624759215276626 4.624759215276626 4.624759215276626 0 2.329689690656103 1.6989700043360187 0 0 + + [H{I|L}]{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}D[TP]TVR{I|L};H{I|L}{I|L}[QA]N{I|L}DK{I|L};[H{I|L}]{I|L}D[{I|L}P]{[MG]|[TS]}R{I|L};H{I|L}{I|L}[QA]GG{I|L}DK{I|L};[QP][RP]DA{I|L}[{I|L}A]A{I|L};[QP][RP]DA{I|L}V[VG]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[HA]{[NV]|[RG]}VR{I|L} 6.4366;6.0392;6.0244;5.1004;4.0931;3.3861;3.3055;2.5969;2.5799;0.57956 +;-;+;-;-;-;-;-;-;- + 1293 NaN NaN 175828.1 NaN 10349 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13305 59.831 NaN 624190 35 0 99548 0.261 + 35754 YYLSKIEEL 9 80 579.30793259274 1156.60131225228 2 579.3076782226562 MULTI HCD FTMS 0 0 0 13301 248664.765625 0.5816363368969064 -2 0.05228424072265625 4 Unmodified _YYLSKIEEL_ ENSG00000087191|ENST00000310144|PSMC5;nc|ENSG00000087191|P62195-2|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant 114.18643581695662 0.002258955990713129 1 YY{I|L}SK{I|L}EE{I|L} 9 0 + 92.507 0 0 7.9982 7.9982 96.376 0 0 0 5.033409903894949 5.033409903894949 5.033409903894949 53.902150411921774 0 2.721848749616356 2 1.6237125054200234 0 + + YY{I|L}SK{I|L}EE{I|L};YY{I|L}EE{I|L}[KS]{I|L};{[QN]|[E{I|L}]|[KN]}E[{I|L}A]{[HG]|PP}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}EYY{I|L}[KS]{I|L} 7.9982;3.3378;1.3765;0.63594 +;-;-;- + 475 + NaN NaN 181339 NaN 10350 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13306 59.834 NaN 367360 35 0 136920 0.261 -1 FPAGYMYPSM 10 77 598.243611247786 1194.472669562372 2 598.2435913085938 MULTI HCD FTMS 0 0 0 13301 65635.640625 0.18206762525045408 -67 1.6911582946777344 5 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 30.636539890814138 0.2266618088935899 1 YPS{M(Oxidation (M))|F} 4 -1 42.423 0 0 3.5516 0 0 682.2782459943375 0 682.2782459943375 0 35.34440644703906 0 0 0 1.3494850021680094 0 0 0 YPS{M(Oxidation (M))|F} 3.5516 + + 144 NaN NaN 140910.9 NaN 10351 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13307 59.838 NaN 201050 35 0 14070 0.261 + 25867 SMSEGSHLIW 10 67 573.7647831195529 NaN 0 573.7647705078125 PEAK HCD FTMS 0 0 0 13301 34376.6875 0.3844710335830321 4 -0.1212921142578125 6 Unmodified _SMSEGSHLIW_ REV__ENST00000553837.5_1_12:57625333-57628141:+|nuORF;REV__ENST00000555774.5_1_12:57624752-57628141:+|nuORF;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF 9.38312468134398 0.33215363477037435 1 S 1 -1 16.237 0 0 1.4175 0 0 854.3929985811501 201.06673608951408 1055.4597346706641 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.4175 + + 37 + NaN NaN 118253.3 NaN 10352 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13308 59.841 NaN 91014 35 0 6311.7 0.261 + 19859 NYAWVYYHM 9 42 631.7689995897978 NaN 0 631.7695922851562 PEAK HCD FTMS 0 0 0 13301 33060.9609375 0.520565124843036 2 -0.06226348876953125 7 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 44.40701690623563 0.06414185948616917 1 MWA 3 8 27.703 0 0 2.196 0 0 596.243735408308 274.0829256647094 870.3266610730175 0 0 0 0 0 1.5 0 0 0 MWA 2.196 - 47 + NaN NaN 96498.3 NaN 10353 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13309 59.844 NaN 124280 35 0 10795 0.261 -1 MPMQDIKMIL 10 41 626.3108861777524 1250.6072194223048 2 626.3114624023438 MULTI HCD FTMS 0 0 0 13301 86314.7265625 1 0 0 8 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.189502756095605 0.45312800054222196 1 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 28.928 0 0 2.3131 0 0 731.2979603498062 0 731.2979603498062 0 24.323806533759438 0 0 0 0 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 2.3131 + + 7 NaN NaN 95318.3 NaN 10354 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13310 59.848 NaN 171830 35 0 12088 0.262 -1 FLDGNEMTL 9 68 528.2393688955063 1054.4641848578126 2 528.2410278320312 MULTI HCD FTMS 0 0 0 13301 56287.484375 0.3456674918460006 6 -0.18705368041992188 9 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 27.628801355627647 0.12213550946336599 1 VNDD{M(Oxidation (M))|F}{I|L} 6 -1 23.849 0 0 2.2618 0 0 333.13240248847814 0 333.13240248847814 0 4.517900470627719 0 0 0 0 0 0 0.3494850021680094 VNDD{M(Oxidation (M))|F}{I|L} 2.2618 - 329 NaN NaN 111490.8 NaN 10355 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13311 59.851 NaN 129940 35 0 18683 0.262 + 31293 VWFPGGAF 8 52 440.7212878422356 879.4280227512712 2 440.72076416015625 MULTI HCD FTMS 0 0 0 13301 41601.7578125 0.03572620014242644 55 -1.532623291015625 10 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.5120171699125776 1 WV 2 7 45.217 0 0 5.1416 0 0 0 591.257938963131 591.257938963131 22.769250191953674 0 0 0 0 0.4247425010840047 2 0 0 WV 5.1416 - 26 + NaN NaN 100824.6 NaN 10356 2953 13301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13313 59.856 NaN 7914700 35 0 1397900 0.327 + 5275 FFFFLFSFLFF 11 77 503.592996758803 1507.757160876609 3 503.593505859375 MULTI HCD FTMS 0 0 0 13312 2986824.25 0.3292225943539467 7 -0.206695556640625 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 28.233623360808718 0.2127292296419295 1 T{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 81.592 0 0 5.4115 0 0 463.20869643379064 0 463.20869643379064 0 58.8566032266867 0 0 0 3.1677353201839438 0 1.6549471895720984 0 T{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4115 - 968 NaN NaN 649440.3 NaN 10357 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13314 59.86 NaN 720260 35 0 89873 0.261 + 18848 NAELWQVSW 9 88 566.7748582236685 1131.535163514137 2 566.7748413085938 MULTI HCD FTMS 0 0 0 13312 239226.375 0.7570567954485871 48 -1.3226966857910156 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 36.12702656103203 0.08312389501731911 1 {M(Oxidation (M))|F}GMSVSW 7 6 56.137 0 0 4.9612 0 0 319.16475112129064 0 319.16475112129064 0 32.26210892105931 0 0 0 2.693672679568534 0 0.6505149978319906 0 {M(Oxidation (M))|F}GMSVSW 4.9612 - 1809 NaN NaN 199029.6 NaN 10358 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13315 59.864 NaN 516730 35 0 33849 0.261 + 33525 YIFRPGTVL 9 88 533.3088156304186 1064.6030783276371 2 533.3099975585938 MULTI HCD FTMS 0 0 0 13312 147045.234375 0.2912505393502716 -10 0.24114990234375 3 Unmodified _YIFRPGTVL_ ENSG00000218819|ENST00000405799|TDRD15 36.04419817259434 0.08350412372117409 1 {I|L}{I|L}HC[HT]{I|L}V 8 7 16.208 0 0 1.5225 0 0 0 145.08926010422047 145.08926010422047 1.6039627052916252 0 0 0 0 0 1.2218487496163564 0 0 {I|L}{I|L}HC[HT]{I|L}V 1.5225 - 490 NaN NaN 165159.6 NaN 10359 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13316 59.867 NaN 436580 35 0 27559 0.261 + 24599 RYLPQCSYF 9 91 588.7792236612701 1175.54389438934 2 588.780029296875 MULTI HCD FTMS 0 0 0 13312 45950.80078125 0.22187504762519825 9 -0.24945068359375 4 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 32.78568957990786 0.09846250359632436 1 [Y{I|L}]R[QP]CSY{M(Oxidation (M))|F} 9 2 + 50.632 0 0 4.3071 4.3071 82.601 0 0 0 18.48567391607766 17.165762445130497 17.165762445130497 5.013487579716767 0 1.2059771852360797 1.5228787452803376 0.7302046884880937 0 [Y{I|L}]R[QP]CSY{M(Oxidation (M))|F};[Y{I|L}]R{[QC]|[C(Carbamidomethyl (C))A]}PSY{M(Oxidation (M))|F};YYT[RV]TGWM;YYTAA{[RE]|[WV]}R{M(Oxidation (M))|F};[Y{I|L}][QA]WWY{M(Oxidation (M))|F};YYT[YK]HA[KC];YYT[YK][KA][HC];[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}N[DV]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[QA]E{M(Oxidation (M))|F} 4.3071;3.8806;2.3035;1.8322;1.606;1.2148;0.90009;0.19817;0.15249 -;-;-;-;-;-;-;-;- 995 NaN NaN 162322.7 NaN 10360 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13317 59.871 NaN 255820 35 0 48529 0.264 + 12066 KKAHVQKVTDF 11 70 434.2509290790705 1299.7309578374116 3 434.25128173828125 MULTI HCD FTMS 0 0 0 13312 56971.16015625 0.4371495256091225 4 -0.1180572509765625 5 Unmodified _KKAHVQKVTDF_ ENSG00000167748|ENST00000301420|KLK1;ENST00000593859.5_1_19:51322452-51323394:-|nuORF;nc|ENSG00000167748|P06870-2|KLK1 3.5926746625661337 0.403164415885289 1 W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 8 8 28.07 0 0 2.1597 0 0 129.09741976678498 0 129.09741976678498 0 22.585325147254956 0 0 0 0.4247425010840047 0 0 0 W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 2.1597 - 106 + NaN NaN 125838.2 NaN 10361 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13318 59.874 NaN 180430 35 0 14264 0.261 -1 WMMIKRCFG 9 62 594.2792859585928 1186.5440189839856 2 594.3024291992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WM(Oxidation (M))MIKRCFG_ ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-4|ATP13A4;OPA1-ATP13A4|1|fusion 7.910154910731844 0.2910521888787154 1 C{[CT]|[{M(Oxidation (M))|F}G]} 3 -1 17.319 0 0 1.4597 0 0 861.434443643945 0 861.434443643945 0 11.121506059964549 0 0 0 0.9247425010840047 0 0 0 C{[CT]|[{M(Oxidation (M))|F}G]} 1.4597 + + 42 + NaN NaN 108591.6 NaN 10362 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13319 59.877 NaN 133820 35 0 15617 0.262 + 531 APDAVYTEL 9 33 489.7427835156652 NaN 0 489.7423095703125 PEAK HCD FTMS 0 0 0 13312 28025.6875 0.7590820140572311 -3 0.08838272094726562 7 Unmodified _APDAVYTEL_ ENSG00000089327|ENST00000392219|FXYD5 10.073929032068715 0.24642998803896465 1 GY 2 8 18.711 0 0 1.9143 0 0 304.15810013504296 450.1994568885208 754.3575570235637 0 0 0 0 0 0.9247425010840047 0 0 0 GY 1.9143 - 6 + NaN NaN 99205.2 NaN 10363 2954 13312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13321 59.882 NaN 1110100 35 0 310910 0.327 + 32000 VYPLMKEYF 9 77 603.2993101230447 1204.5840673128894 2 603.2993774414062 MULTI HCD FTMS 0 0 0 13320 581602.6875 0.13859896244285738 45 -1.2409248352050781 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 72.96794272382148 0.008127836904478181 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 78.733 0 0 6.5361 6.5361 90.313 0 0 0 17.86486779333204 11.588709367037282 11.588709367037282 11.588709367037282 0 2.25 2 0.7059771852360797 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}V{M(Oxidation (M))|F}Y;[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}VY;[YV]PA[MT][{I|L}T]Y{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{[HG]|PP}{I|L}{M(Oxidation (M))|F} 6.5361;5.5741;5.3655;5.0531;4.8393;4.6072;4.5269;4.243;3.8334;3.8333 -;-;-;-;-;-;-;-;-;- 1431 NaN NaN 250073.8 NaN 10364 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13322 59.887 NaN 450540 35 0 26039 0.261 + 35940 YYTVRNFTL 9 95 588.8060293066558 1175.5975056801115 2 588.806884765625 MULTI HCD FTMS 0 0 0 13320 200267.53125 1 0 0 2 Unmodified _YYTVRNFTL_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 55.50274090549119 0.023872834264864425 1 YYTVR[QA]Y{I|L} 9 3 + 47.631 0 0 4.0516 4.0516 82.362 0 0 0 3.9019605594861346 24.434603525338254 3.9019605594861346 5.213398170252553 0 1.274227503252014 2 0.7396518287104438 0.5941876774005248 YYTVR[QA]Y{I|L};YYTH[PG][KP]T{I|L};YYTVRTG{[CT]|[{M(Oxidation (M))|F}G]}{I|L};[Y{I|L}]R{[QS]|[NT]}S{M(Oxidation (M))|F}Y{I|L};[Y{I|L}]{[QS]|[NT]}RS{M(Oxidation (M))|F}Y{I|L};[YT]YVR[QA]Y{I|L};[YT]YH[PG][KP]T{I|L};{[TV]|[{I|L}S]}QYRS{M(Oxidation (M))|F}Y{I|L};[Y{I|L}][VG]H{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}TE{[QV]|[N{I|L}]|[RA]|[KV]}[KP]T{I|L} 4.0516;3.6081;3.2929;1.9591;1.3645;1.2953;0.85179;0.74716;0.71133;0.6808 -;-;-;-;-;-;-;-;-;- 1588 NaN NaN 149224.5 NaN 10365 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13323 59.89 NaN 139680 35 0 13990 0.262 -1 NALSDATMK 9 54 483.7330559165783 NaN 0 483.7327880859375 PEAK HCD FTMS 0 0 0 13320 22649.7890625 0.2753950315013548 1 -0.02947998046875 3 Oxidation (M) _NALSDATM(Oxidation (M))K_ ENSG00000106688|ENST00000262352|SLC1A1 9.38312468134398 0.24977752951804 1 Q 1 -1 9.2917 0 0 0.96242 0 0 132.10089748633317 702.268476924336 834.3693744106693 0 0 0 0 0 0 0 0 0.3807196863200844 Q 0.96242 - 15 + NaN NaN 101969.4 NaN 10366 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13324 59.893 NaN 213090 35 0 17018 0.261 -1 0 68 606.7838077584753 1211.5530625837505 2 606.7988891601562 MULTI HCD FTMS 0 0 0 13320 47628.13671875 0.06592119955359928 51 -1.4146919250488281 4 NaN NaN 1 T{M(Oxidation (M))|F}EE{I|L} 5 -1 29.654 0 0 2.4476 0 0 574.2762318341812 0 574.2762318341812 0 14.295092805171778 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F}EE{I|L} 2.4476 - 424 NaN NaN 114367.4 NaN 10367 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13325 59.897 NaN 231360 35 0 34741 0.262 + 2025 DDMQHGFF 8 50 498.69619206273165 995.3778311922633 2 498.6961364746094 MULTI HCD FTMS 0 0 0 13320 63192.453125 0.7509808035830341 2 -0.05902862548828125 5 Unmodified _DDMQHGFF_ REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.1066 0 0 683.2296816334728 0 683.2296816334728 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1066 + + 7 + NaN NaN 121330.5 NaN 10368 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13326 59.9 NaN 188780 35 0 13859 0.261 + 9837 HYQDVSCLQF 10 61 620.2768742249386 1238.5391955166772 2 620.2774658203125 MULTI HCD FTMS 0 0 0 13320 47485.02734375 0.19460585779277853 22 -0.6135139465332031 6 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 23.80106514851385 0.2884848839100546 1 SC{I|L}Q{M(Oxidation (M))|F} 5 5 54.553 0 0 4.4046 0 0 642.2785511701187 0 642.2785511701187 0 45.65166884247503 0 0 0 1.579689690656103 0 0.3807196863200844 0 + SC{I|L}Q{M(Oxidation (M))|F} 4.4046 + + 357 NaN NaN 124869.9 NaN 10369 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13327 59.903 NaN 164550 35 0 17908 0.262 + 242 AFDVAEKYL 9 61 528.2740954730497 NaN 0 528.2747802734375 PEAK HCD FTMS 0 0 0 13320 41865.86328125 0.7494467952514142 1 -0.02947998046875 7 Unmodified _AFDVAEKYL_ ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814|ACTN1 33.4449034751529 0.09929786623258978 1 YKEAV 5 8 11.119 0 0 1.0544 0 0 131.08327287793674 330.1100252740844 461.19329815202116 0 0 0 0 0 1.3494850021680094 0 0 0 YKEAV 1.0544 - 91 + NaN NaN 104634.9 NaN 10370 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13328 59.907 NaN 164540 35 0 7215.7 0.261 -1 APFKFDMEL 9 75 557.2678406421421 1112.5211283510841 2 557.77099609375 MULTI HCD FTMS 0 0 0 13320 43329.16015625 0.0973784797928504 21 -0.590606689453125 8 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 26.020703789607367 0.13554323117744113 1 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 6 -1 30.074 0 0 2.7033 0 0 315.158006736525 0 315.158006736525 0 8.391850455281968 0 0 0 0.8494850021680094 0 0 0 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 2.7033 + + 169 NaN NaN 115387.5 NaN 10371 2955 13320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13330 59.912 NaN 379410 35 0 55031 0.327 + 4750 EYTAKIALL 9 56 511.2999066263948 1020.5852603195896 2 511.300048828125 MULTI HCD FTMS 0 0 0 13329 126194.796875 0.1567943391120238 9 -0.25959014892578125 1 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 46.020951573049366 0.037705236580089195 1 [YE]TAK{I|L}A{I|L}{I|L} 9 0 + 54.135 0 0 5.3043 5.3043 91.723 0 0 0 7.007046801327732 10.202264589233394 7.007046801327732 54.13479704297593 0 0.7302046884880937 1.3979400086720375 0 0 + + [YE]TAK{I|L}A{I|L}{I|L} 5.3043 + + 157 + NaN NaN 143133.6 NaN 10372 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13331 59.916 NaN 405950 35 0 24952 0.261 + 5530 FLEEREIAL 9 80 560.3060679374873 1118.5975829417746 2 560.2951049804688 MULTI HCD FTMS 0 0 0 13329 79266.28125 0.6915037546789083 1 -0.02954864501953125 2 Unmodified _FLEEREIAL_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF 19.256988751693697 0.19398022840297344 1 [YV]T[YK]TTM 8 9 42.515 0 0 3.8007 0 0 0 128.0725740518433 128.0725740518433 17.510372991391336 0 0 0 0 0 2 0.6139829889124311 0 [YV]T[YK]TTM 3.8007 - 912 NaN NaN 151317.6 NaN 10373 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13332 59.92 NaN 459260 35 0 59547 0.262 + 8784 HIIDDALVRL 10 87 582.8400430246339 1163.6655331160678 2 583.3422241210938 MULTI HCD FTMS 0 0 0 13329 60749.13671875 0.15872554436531824 15 -0.4134635925292969 3 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 53.31671820480216 0.06572736166898346 1 H{I|L}{I|L}DD{I|L}AVR{I|L} 10 2 + 74.457 0 0 6.3985 6.3985 83.999 0 0 0 44.27977691042017 7.7545373444029195 7.7545373444029195 0.5237875363565792 0 2.443672679568534 1.6989700043360187 0 0 H{I|L}{I|L}DD{I|L}AVR{I|L};{I|L}H{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}DDA{I|L}VR{I|L};{I|L}H{I|L}DDA{I|L}VR{I|L};[H{I|L}]{I|L}DVV{[RE]|[WV]}A{I|L};[H{I|L}]{I|L}DVV{[CP]|[EA]}R{I|L};[H{I|L}]{I|L}D[{I|L}P]{[MG]|[TS]}R{I|L} 6.3985;6.3535;6.0823;6.0373;3.9992;3.8426;3.2812 -;-;+;-;-;-;- + 933 + NaN NaN 166085.3 NaN 10374 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13333 59.923 NaN 290720 35 0 25294 0.261 + 4676 EYPDRIMNTF 10 59 643.2977950714372 1284.5810372096744 2 643.2984008789062 MULTI HCD FTMS 0 0 0 13329 56128.0859375 0.01802997016585456 42 -1.1624259948730469 4 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 59.05245873256422 0.044867740978679724 1 [YE][DP]R{I|L}MNT{M(Oxidation (M))|F} 10 0 + 60.524 0 0 4.7116 4.7116 85.016 0 0 0 39.07067783193931 14.572034164243561 14.572034164243561 9.164539485499255 0 1.9604093769761874 1.5228787452803376 0.3807196863200844 0 + + [YE][DP]R{I|L}MNT{M(Oxidation (M))|F};[YE][DP]R{I|L}MGGT{M(Oxidation (M))|F} 4.7116;3.9982 +;- + 149 + NaN NaN 119197.5 NaN 10375 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13334 59.926 NaN 308940 35 0 13864 0.261 + 24011 RWFDKTLQF 9 81 620.8273951165904 1239.6402372999808 2 620.8273315429688 MULTI HCD FTMS 0 0 0 13329 58065.99609375 0.7716379396264965 1 -0.02954864501953125 5 Unmodified _RWFDKTLQF_ ENSG00000095321|ENST00000318080|CRAT;nc|ENSG00000095321|P43155-2|CRAT 23.789781309258295 0.1548179064208189 1 Q{I|L}CS[WY]Q{M(Oxidation (M))|F} 8 7 30.169 0 0 2.4337 0 0 166.18487619369017 0 166.18487619369017 0 7.483260419072533 0 0 0 0.6549471895720985 0 0.3252574989159953 0.4247425010840047 Q{I|L}CS[WY]Q{M(Oxidation (M))|F} 2.4337 - 619 + NaN NaN 146415.1 NaN 10376 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13335 59.93 NaN 154950 35 0 22296 0.263 + -1 VEGFHMYI 8 46 506.23332718429697 NaN 0 506.23321533203125 PEAK HCD FTMS 0 0 0 13329 38953.19921875 0.47552119589251945 9 -0.25959014892578125 6 Oxidation (M) _VEGFHM(Oxidation (M))YI_ REV__ENSG00000079999|ENST00000171111|KEAP1 8.593279151180031 0.38822285293237185 1 Y 1 -1 11.99 0 0 1.1866 0 0 131.0933542687339 713.2722408392883 844.3655951080223 0 0 0 0 0 0.5 0 0 0 Y 1.1866 + + 9 + NaN NaN 115625.3 NaN 10377 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13336 59.933 NaN 192540 35 0 31142 0.261 + 243 AFDVAEKYL 9 56 528.2740954730497 NaN 0 528.273193359375 PEAK HCD FTMS 0 0 0 13329 27014.34375 0.4835876239610432 2 -0.062412261962890625 7 Unmodified _AFDVAEKYL_ ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814|ACTN1 13.614867670302875 0.2292710935503678 1 {I|L}NV 3 8 9.2082 0 0 0.8732 0 0 131.09547990918674 594.2227877252561 725.3182676344429 0 0 0 0 0 0 0 0 0 {I|L}NV 0.8732 - 31 + NaN NaN 107866.6 NaN 10378 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13337 59.936 NaN 122630 35 0 20985 0.261 + 32630 WLTRHPLY 8 55 543.3003860213421 NaN 0 543.7457275390625 PEAK HCD FTMS 0 0 0 13329 16296.7646484375 1 0 0 8 Unmodified _WLTRHPLY_ REV__ENST00000488482.1_1_10:91403553-91403664:-|nuORF 2.8892196856762586 0.38822285293237185 1 Y 1 -1 6.9897 0 0 0.64446 0 0 131.12500234995747 787.3749014526586 918.499903802616 0 0 0 0 0 0 0 0 0 Y 0.64446 + + 2 + NaN NaN 99879.8 NaN 10379 2956 13329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13339 59.941 NaN 3498300 35 0 254700 0.327 + 13170 KYLSVQGQLF 10 121 591.8294574746005 1181.644362016001 2 591.829833984375 MULTI HCD FTMS 0 0 0 13338 2422059.75 0.3243653721053331 4 -0.12150192260742188 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 147.24064527209634 2.7126949688607576E-07 1 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 96.007 0 0 8.1249 8.1249 89.523 0 0 0 6.1092437480817665 14.322333069283658 6.1092437480817665 6.1092437480817665 0 2.5138793319624577 1.3010299956639813 1.3129529932484498 1.0114393726401687 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}AN{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{M(Oxidation (M))|F}{I|L};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}AN{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}AGG{I|L}{M(Oxidation (M))|F} 8.1249;7.6079;7.3493;7.2955;7.0909;6.9128;6.9002;6.8323;6.7785;6.5199 -;+;-;-;-;-;-;-;-;- + 12866 NaN NaN 571542.5 NaN 10380 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13340 59.946 NaN 748320 35 0 122250 0.261 + 32942 YAIREEIVL 9 78 553.3160597713384 1104.6175666094766 2 553.3162231445312 MULTI HCD FTMS 0 0 0 13338 340032.125 0.6117834095516456 -2 0.05902862548828125 2 Unmodified _YAIREEIVL_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 49.55428908609986 0.03219431099695407 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}V{I|L} 9 0 + 55.587 0 0 5.0323 5.0323 83.053 0 0 0 9.920299789533402 13.149466503448807 9.920299789533402 3.4678748622465605 0 1.4802046884880937 1.5228787452803376 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGEE{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REEV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGEEV{I|L}{I|L} 5.0323;4.7183;4.3071;3.9932 +;-;-;- + 1724 NaN NaN 186343.8 NaN 10381 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13341 59.949 NaN 447680 35 0 96620 0.261 + 10629 IPSEQEQL 8 71 472.2402205445312 942.4658881558624 2 472.2401428222656 MULTI HCD FTMS 0 0 0 13338 232378.359375 0.4892885133286094 2 -0.06576156616210938 3 Unmodified _IPSEQEQL_ ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 39.957323273324995 0.23147789240432073 1 P{I|L}{[C(Carbamidomethyl (C))E]|[WC]}SP 6 6 39.359 0 0 4.1761 0 0 0 256.1304110162719 256.1304110162719 9.749321833847873 0 0 0 0 0.5 2 0 0 P{I|L}{[C(Carbamidomethyl (C))E]|[WC]}SP 4.1761 - 298 + NaN NaN 152208.2 NaN 10382 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13342 59.953 NaN 391370 35 0 54366 0.261 + 26715 SYDHVELTF 9 72 555.7584045802503 1109.5022562273004 2 555.7589111328125 MULTI HCD FTMS 0 0 0 13338 155540.953125 0.672212830617391 -1 0.02954864501953125 4 Unmodified _SYDHVELTF_ ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2 81.61307344734483 0.005330412723537057 1 C(Carbamidomethyl (C))E{I|L}T{M(Oxidation (M))|F} 5 5 55.868 0 0 5.0354 0 0 441.2247486798844 0 441.2247486798844 0 30.806321208805244 0 0 0 1.5 0 0.7134679910804405 0 C(Carbamidomethyl (C))E{I|L}T{M(Oxidation (M))|F} 5.0354 - 177 NaN NaN 143450.2 NaN 10383 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13343 59.956 NaN 446430 35 0 31509 0.261 + 30582 VNSNLLEALF 10 88 560.3060679374873 1118.5975829417746 2 560.3062744140625 MULTI HCD FTMS 0 0 0 13338 75015.71875 0.6544226669591868 2 -0.06576156616210938 5 Unmodified _VNSNLLEALF_ REV__ENSG00000179832|ENST00000326134|MROH1;REV__ENST00000536221.1_8:145474248-145485625:+|nuORF;REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 20.41453444215458 0.3201613495159799 1 VYTT[YK]TP 8 -1 48.383 0 0 4.3254 0 0 0 162.05550562076408 162.05550562076408 22.163624927997283 0 0 0 0 0 2 0.7059771852360797 0 VYTT[YK]TP 4.3254 - 1628 + NaN NaN 147922.9 NaN 10384 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13344 59.959 NaN 240600 35 0 21524 0.261 + -1 LRRSFSRCMFF 11 64 508.25243211958565 1521.735466958957 3 508.2526550292969 MULTI HCD FTMS 0 0 0 13338 23454.05078125 0.11334584870791588 10 -0.28582000732421875 6 Carbamidomethyl (C),Oxidation (M) _LRRSFSRC(Carbamidomethyl (C))M(Oxidation (M))FF_ REV__ENSG00000138271|ENST00000260843|GPR87 4.11662792887243 0.40086653484894175 1 A[DV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 37.14 0 0 2.4406 0 0 811.3830645609237 0 811.3830645609237 0 22.52574989159953 0 0 0 0.9247425010840047 0 0.4247425010840047 0 A[DV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4406 - 86 NaN NaN 116527.6 NaN 10385 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13345 59.962 NaN 253100 35 0 21406 0.261 -1 FVVEHDFIM 9 66 576.7734505099356 1151.5323480866712 2 576.7726440429688 MULTI HCD FTMS 0 0 0 13338 49393.67578125 0.15259799048438205 28 -0.7703819274902344 7 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 34.10243960390752 0.09241788333544565 1 V{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 -1 37.735 0 0 3.2769 0 0 627.2593250959 0 627.2593250959 0 25.855931671512877 0 0 0 0.8807196863200843 0 0 0 V{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.2769 - 29 NaN NaN 137524.2 NaN 10386 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13346 59.966 NaN 155810 35 0 9698.9 0.261 + 35853 YYQNYFEKL 9 41 634.3036450504073 1266.5927371676146 2 634.8042602539062 MULTI HCD FTMS 0 0 0 13338 31372.23828125 0.021580094887689794 54 -1.4897956848144531 8 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 41.95555342248728 0.056367691549927025 1 YYQ[YN][{M(Oxidation (M))|F}E]K{I|L} 9 0 + 66.188 0 0 5.2257 5.2257 91.882 0 0 0 22.235834254131106 54.95113412721771 22.235834254131106 66.18825918141795 0 1.9247425010840047 2 0 0.3807196863200844 + + YYQ[YN][{M(Oxidation (M))|F}E]K{I|L} 5.2257 + + 20 NaN NaN 105667.8 NaN 10387 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13347 59.969 NaN 161600 35 0 12656 0.263 + -1 YLTEKMFLWFF 11 59 514.2560033142219 1539.7461805428654 3 514.5906982421875 MULTI HCD FTMS 0 0 0 13338 7027.49560546875 0.05879279256462084 9 -0.25621795654296875 9 Oxidation (M) _YLTEKM(Oxidation (M))FLWFF_ REV__ENSG00000126777|ENST00000395314|KTN1;REV__nc|ENSG00000126777|Q86UP2-2|KTN1;REV__nc|ENSG00000126777|Q86UP2-3|KTN1;REV__nc|ENSG00000126777|Q86UP2-4|KTN1 2.2527281973983926 0.4090409658946738 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 30.217 0 0 1.9624 0 0 1227.6014820289872 0 1227.6014820289872 0 27.74227503252014 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9624 + + 19 NaN NaN 102371.2 NaN 10388 2957 13338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13349 59.974 NaN 1416700 35 0 150920 0.327 + 27053 SYMGHFDLL 9 111 549.749911500793 1097.485270068386 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13348 926581.3125 0.08836840205134035 30 -0.816070556640625 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 111.28704002717404 0.0027322905094575235 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 76.938 0 0 7.0104 7.0104 93.127 0 0 0 36.41034944633199 9.009461452434238 9.009461452434238 22.51328348049499 0 2.504432191740108 2 1.0044321917401078 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[C(Carbamidomethyl (C))N]{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[{I|L}P]D{M(Oxidation (M))|F}[MT];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[C(Carbamidomethyl (C))N]{M(Oxidation (M))|F}VE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[C(Carbamidomethyl (C))N]V{M(Oxidation (M))|F}E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L} 7.0104;4.9591;4.3125;3.9879;3.7609;3.2373;3.0783;2.8512;2.7585;2.6118 +;+;-;-;-;-;-;-;-;- + 5275 + NaN NaN 309094.5 NaN 10389 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13350 59.978 NaN 785850 35 0 105590 0.261 + 35755 YYLSKIEEL 9 82 579.30793259274 1156.60131225228 2 579.30810546875 MULTI HCD FTMS 0 0 0 13348 191939.484375 0.4489537483010909 3 -0.0886383056640625 2 Unmodified _YYLSKIEEL_ ENSG00000087191|ENST00000310144|PSMC5;nc|ENSG00000087191|P62195-2|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant 103.82355648334675 0.003950725192926219 1 YY{I|L}SK{I|L}EE{I|L} 9 0 + 92.265 0 0 7.9772 7.9772 94.86 0 0 0 8.01054815328159 8.01054815328159 8.01054815328159 24.06804392152253 0 2.7104093769761874 2 1.610924374808178 0 + + YY{I|L}SK{I|L}EE{I|L};YY{I|L}SKEE{I|L}{I|L};[Y{I|L}]YSK{I|L}EE{I|L};[KS]{[WT]|[RM]}KHEE{I|L};YY{I|L}EE{I|L}[KS]{I|L};[KS]{I|L}YY{I|L}EE{I|L};[Y{I|L}]YEE{I|L}[KS]{I|L};{[QN]|[E{I|L}]|[KN]}EYY{I|L}[KS]{I|L} 7.9772;5.8963;5.875;3.4547;3.1669;2.8653;1.7573;0.76491 +;-;-;-;-;-;-;- + 434 + NaN NaN 203838.8 NaN 10390 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13351 59.982 NaN 287840 35 0 34109 0.261 -1 0 76 617.3170389703915 1232.619525007583 2 617.316650390625 MULTI HCD FTMS 0 0 0 13348 172749.4375 0.07747441009659667 20 -0.5477867126464844 3 NaN NaN 1 QPDPE 5 -1 58.998 0 0 4.7864 0 0 648.3619251935562 0 648.3619251935562 0 28.11960923695672 0 0 0 1.2059771852360797 0 0.4247425010840047 0.7742275032520141 QPDPE 4.7864 - 359 NaN NaN 124851.2 NaN 10391 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13352 59.985 NaN 343020 35 0 62526 0.262 + 16774 LYDPVISKL 9 70 524.3079008486018 1046.6012487640035 2 524.30810546875 MULTI HCD FTMS 0 0 0 13348 132988.5625 0.41230111614744325 4 -0.1052093505859375 4 Unmodified _LYDPVISKL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1 49.52724829834842 0.03223213920720493 1 {I|L}YD[VP]{I|L}SK{I|L} 9 0 + 84.575 0 0 8.0809 8.0809 93.306 0 0 0 54.889917747712644 7.632192780232785 7.632192780232785 12.74227503252014 0 2.6237125054200234 2 0.8494850021680094 0 + + {I|L}YD[VP]{I|L}SK{I|L};[Y{I|L}]D[VP]{I|L}SK{I|L};{I|L}YD[VP][KT]V{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VP]{I|L}SK{I|L} 8.0809;6.8634;5.4789;4.0189 +;+;-;- + 174 + NaN NaN 133119 NaN 10392 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13353 59.989 NaN 831160 35 0 132090 0.261 + 15264 LPAAGVGDMVM 11 73 538.7592438788679 1075.5039348245357 2 538.7593994140625 MULTI HCD FTMS 0 0 0 13348 293628.21875 0.699028832242582 -17 0.42440032958984375 5 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 99.79894945604345 0.019041132516778112 1 [{I|L}P]AAGVGD{M(Oxidation (M))|F}VM 11 0 + 75.601 0 0 7.0294 7.0294 91.233 0 0 0 3.9344043059427065 57.18972212483246 3.9344043059427065 11.575773191777927 0 2.7302046884880937 0 0.6139829889124311 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}VM;[{I|L}P]AQVGD{M(Oxidation (M))|F}VM 7.0294;5.953 +;- + 445 NaN NaN 215441.5 NaN 10393 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13354 59.992 NaN 967450 35 0 145460 0.261 + 1435 AYSAKIALF 9 71 492.2816094445605 982.548665955921 2 492.2818603515625 MULTI HCD FTMS 0 0 0 13348 481432.53125 0.47926138730400275 -3 0.09189224243164062 6 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 142.0795815696625 1.719916958814042E-05 1 AYSAK{I|L}A{I|L}{M(Oxidation (M))|F} 9 0 + 105.44 0 0 10.731 10.731 89.951 0 0 0 80.21951616729218 14.973024840566467 14.973024840566467 1.4240411252705343 0 2.9916440611282624 1.6989700043360187 0.9247425010840047 0 + + AYSAK{I|L}A{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 10.731;10.586 +;+ + 390 + NaN NaN 237285.2 NaN 10394 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13355 59.995 NaN 712690 35 0 156390 0.261 + 27359 SYSMIVNNL 9 75 528.7549745835934 1055.4953962339866 2 528.7550048828125 MULTI HCD FTMS 0 0 0 13348 248378.546875 0.5443988677103615 -11 0.2808265686035156 7 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 142.0795815696625 1.719916958814042E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 79.377 0 0 7.5203 7.5203 88.256 0 0 0 5.796123934590582 47.40422239681987 5.796123934590582 5.255762612236907 0 2.555462187404089 0 1.066901560044258 0.6989700043360187 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}VDM{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}QQA{I|L};[YT]{I|L}V{[QN]|[E{I|L}]|[KN]}S[MT];[YT]{I|L}V{[QN]|[E{I|L}]|[KN]}D{[CT]|[{M(Oxidation (M))|F}G]} 7.5203;7.0224;6.6479;6.3168;5.8189;5.1174;3.0067;2.7321;2.5099;2.4119 +;-;-;-;-;-;-;-;-;- + 523 NaN NaN 191256 NaN 10395 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13356 59.999 NaN 545380 35 0 46557 0.261 + 8785 HIIDDALVRL 10 105 582.8400430246339 1163.6655331160678 2 582.83935546875 MULTI HCD FTMS 0 0 0 13348 115330.9921875 0.18495314870585128 15 -0.4067115783691406 8 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 40.72490554402381 0.1391161235525472 1 H{I|L}{I|L}DW 5 6 47 0 0 4.0389 0 0 0 496.32465540103755 496.32465540103755 33.46787486224656 0 0 0 0 1 1.6989700043360187 0 0 H{I|L}{I|L}DW 4.0389 - 1335 + NaN NaN 165042.2 NaN 10396 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13357 60.002 NaN 97257 35 0 17621 0.262 + 27414 SYTSGLETL 9 43 485.7401172817481 969.4656816302962 2 485.7402648925781 MULTI HCD FTMS 0 0 0 13348 55983.29296875 0.052948597075939595 19 -0.5216217041015625 9 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 20.453626601364224 0.18364154288633264 1 {M(Oxidation (M))|F}ET{I|L} 4 6 36.96 0 0 3.8124 0 0 461.19774062324376 0 461.19774062324376 0 33.46528504924979 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}ET{I|L} 3.8124 - 25 NaN NaN 93983.3 NaN 10397 2958 13348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13359 60.007 NaN 3945200 35 0 676890 0.327 + -1 VLWTLCFYLFF 11 94 503.592996758803 1507.757160876609 3 503.59326171875 MULTI HCD FTMS 0 0 0 13358 1217390.5 0.13418682359762157 12 -0.31815338134765625 1 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 18.721224879955976 0.29396376558286563 1 T{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 81.72 0 0 5.4199 0 0 463.21211440254064 0 463.21211440254064 0 58.984484532805155 0 0 0 3.0924778212679485 0 1.6549471895720984 0 T{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4199 - 1315 NaN NaN 679091.2 NaN 10398 2959 13358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13360 60.011 NaN 897660 35 0 462380 0.261 -1 0 65 427.3025079880766 852.5904630429533 2 427.3026428222656 MULTI HCD FTMS 0 0 0 13358 579695.3125 0.5774120448334644 -9 0.2554588317871094 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5364 0 0 687.5112526931471 0 687.5112526931471 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5364 - 16 + NaN NaN 213281.1 NaN 10399 2959 13358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13361 60.015 NaN 893830 35 0 81366 0.261 -1 FLDISMPVM 9 88 534.7591458270023 NaN 0 534.7764282226562 PEAK HCD FTMS 0 0 0 13358 13470.0322265625 0.9005800588559753 -1 0.03289794921875 3 Oxidation (M) _FLDISMPVM(Oxidation (M))_ tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1 18.13498045792455 0.19991664011725976 1 {I|L}{M(Oxidation (M))|F}[HM]{I|L}E 6 -1 18.382 0 0 1.722 0 0 132.05344465972115 162.05628381900627 294.10972847872745 0 0 0 0 0 0 0 1.0501648626366045 0 {I|L}{M(Oxidation (M))|F}[HM]{I|L}E 1.722 - 179 + NaN NaN 219480 NaN 10400 2959 13358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13362 60.018 NaN 549660 35 0 69678 0.261 + 18849 NAELWQVSW 9 86 566.7748582236685 1131.535163514137 2 566.7748413085938 MULTI HCD FTMS 0 0 0 13358 148655.90625 0.4704371079908333 53 -1.4599609375 4 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 1 P{M(Oxidation (M))|F}MGSVSW 8 6 57.566 0 0 5.0874 0 0 222.1037134224935 0 222.1037134224935 0 29.175259782126233 0 0 0 2.6549471895720984 0 0.3494850021680094 0 P{M(Oxidation (M))|F}MGSVSW 5.0874 - 806 + NaN NaN 165892 NaN 10401 2959 13358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13363 60.022 NaN 508850 35 0 75865 0.261 + 23556 RPDDYLYSL 9 71 571.2793055216371 1140.544058110074 2 571.2792358398438 MULTI HCD FTMS 0 0 0 13358 297021.65625 0.8989178023062219 -4 0.12479019165039062 5 Unmodified _RPDDYLYSL_ ENSG00000143398|ENST00000368888|PIP5K1A;ENSG00000186111|ENST00000335312|PIP5K1C;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 40.23920728925047 0.06424668180817725 1 Y{I|L}YS{I|L} 5 4 53.315 0 0 4.6746 0 0 483.20652968574376 0 483.20652968574376 0 26.404243831634986 0 0 0 1.2614393726401687 0 0.4247425010840047 0 + Y{I|L}YS{I|L} 4.6746 + + 133 NaN NaN 169309.4 NaN 10402 2959 13358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13364 60.025 NaN 202820 35 0 13812 0.261 -1 VWMRSPLSTF 10 61 620.3128350582227 1238.6111171832454 2 620.3134155273438 MULTI HCD FTMS 0 0 0 13358 74218.4453125 0.727548507581278 -5 0.1509552001953125 6 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ ENST00000558985.5_1_15:60656692-60690187:-|nuORF;ENST00000559725.5_1_15:60656692-60682421:-|nuORF 20.580933911654288 0.31860490502175054 1 Q{I|L}CS[NP]NV{[CP]|[EA]} 10 -1 31.669 0 0 2.5568 0 0 165.15301910309682 0 165.15301910309682 0 -2.1484156871629523 -2.1484156871629523 0 0 0 0 0.3252574989159953 0 Q{I|L}CS[NP]NV{[CP]|[EA]} 2.5568 - 304 + NaN NaN 127813.6 NaN 10403 2959 13358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13366 60.03 NaN 1208100 35 0 98687 0.327 + 5810 FPAYERVVL 9 92 547.3058722379695 1092.597191542739 2 547.3060302734375 MULTI HCD FTMS 0 0 0 13365 451736.84375 0.8193091327063267 1 -0.03287506103515625 1 Unmodified _FPAYERVVL_ ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1 67.83816525789305 0.009787749748478139 1 {I|L}MAYE 5 6 62.771 0 0 5.7451 0 0 0 482.3090839946595 482.3090839946595 42.55923886417362 0 0 0 0 1.5114393726401687 1.3979400086720375 0.7134679910804405 0 {I|L}MAYE 5.7451 - 771 + NaN NaN 271472.7 NaN 10404 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13367 60.034 NaN 805890 35 0 236240 0.261 + 32001 VYPLMKEYF 9 63 603.2993101230447 1204.5840673128894 2 603.2997436523438 MULTI HCD FTMS 0 0 0 13365 429321.46875 0.10230955152385471 50 -1.3783416748046875 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 63.960520009940105 0.0120409805053046 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 88.193 0 0 7.3214 7.3214 88.453 0 0 0 17.01544993495972 16.53212513775344 16.53212513775344 6.5321251377534395 0 2.1989700043360187 2 0.3807196863200844 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F} 7.3214;6.7791;5.9089;5.6553;5.534;5.2804 -;+;-;-;-;- + 357 NaN NaN 207876.3 NaN 10405 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13368 60.038 NaN 836020 35 0 187580 0.261 + 23987 RVSDINFTL 9 80 532.7904872455442 1063.5664215578884 2 533.3090209960938 MULTI HCD FTMS 0 0 0 13365 13013.3271484375 0.34495577221609225 -5 0.14765548706054688 3 Unmodified _RVSDINFTL_ ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 24.990960013464015 0.14443998892849796 1 V{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}[MT]{M(Oxidation (M))|F} 8 5 21.515 0 0 2.0229 0 0 130.05845060055918 0 130.05845060055918 0 -3.5687810089314844 -3.5687810089314844 0 0 0 0 0.3054621874040891 1.305462187404089 V{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}[MT]{M(Oxidation (M))|F} 2.0229 - 165 + NaN NaN 218089.9 NaN 10406 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13369 60.041 NaN 1141300 35 0 101120 0.261 + 34708 YPVEIHEYL 9 95 581.7924129009604 1161.5702728687206 2 581.7926635742188 MULTI HCD FTMS 0 0 0 13365 440882.6875 0.11650808146346132 -6 0.17382049560546875 4 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 171.46704133333822 3.0280501322097084E-09 1 YPVE{I|L}HEY{I|L} 9 0 + 116.07 0 0 9.9923 9.9923 92.437 0 0 0 7.973638051534152 7.973638051534152 7.973638051534152 7.973638051534152 0 3.274227503252014 1.6989700043360187 1.774227503252014 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};YP{I|L}D{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};YPYH{I|L}E{I|L}D{I|L};[VP]YE{I|L}HEY{I|L};[VP]YE{I|L}HYE{I|L};YPVE{I|L}[Q{I|L}][WD] 9.9923;9.3059;8.8821;8.5246;8.2446;8.2029;7.9134;7.326;6.9543;6.8934 +;+;-;-;-;-;-;-;-;- + 5826 + NaN NaN 272125.5 NaN 10407 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13370 60.044 NaN 759730 35 0 254480 0.261 + 27246 SYPAKLSFI 9 51 513.2867718640636 1024.558990794927 2 513.2869873046875 MULTI HCD FTMS 0 0 0 13365 211745.09375 0.6028134317702316 -3 0.08862686157226562 5 Unmodified _SYPAKLSFI_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1 23.789781309258295 0.1548179064208189 1 {[{M(Oxidation (M))|F}C]|[YS]}P[KA]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 9 2 + 25.837 0 0 2.5217 2.5217 87.319 0 0 0 8.384767769392742 2.1252997059802006 2.1252997059802006 25.836674868580904 0 1.3494850021680094 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}P[KA]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 2.5217 - 34 + NaN NaN 197839.2 NaN 10408 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13371 60.048 NaN 701870 35 0 79242 0.261 + 24979 RYVDQVLQL 9 93 567.3189919727025 1132.623431012205 2 567.31884765625 MULTI HCD FTMS 0 0 0 13365 110087.640625 0.6519922030508561 5 -0.14141464233398438 6 Unmodified _RYVDQVLQL_ ENSG00000197081|ENST00000356956|IGF2R 34.93206674587334 0.08860942999206235 1 {[CT]|[{M(Oxidation (M))|F}G]}SV[RD]V{I|L}Q{I|L} 10 4 + 53.778 0 0 4.7481 4.7481 85.078 0 0 0 7.269987279362624 11.888793896675267 7.269987279362624 9.164539485499255 0 1.1861818737241734 0 0.3494850021680094 0.3807196863200844 {[CT]|[{M(Oxidation (M))|F}G]}SV[RD]V{I|L}Q{I|L};{[CT]|[{M(Oxidation (M))|F}G]}SV[RD]V{I|L}[AG]{I|L};[YQ]V[RD]V{I|L}Q{I|L};[YQ]V[RD]V{I|L}[AG]{I|L};[YR]V{[NV]|[RG]}E{I|L}Q{I|L};[YR]V{[NV]|[RG]}E{I|L}[AG]{I|L};[YR]V{[NV]|[RG]}{I|L}EQ{I|L};[YR]V{[NV]|[RG]}{I|L}E[AG]{I|L};[YR]V{[NV]|[RG]}{I|L}QE{I|L} 4.7481;3.939;3.8628;3.0498;2.5547;1.7417;1.4962;0.68317;0.40263 -;-;-;-;-;-;-;-;- 1205 NaN NaN 209709.7 NaN 10409 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13372 60.051 NaN 287000 35 0 17249 0.261 + 35941 YYTVRNFTL 9 76 588.8060293066558 1175.5975056801115 2 588.806396484375 MULTI HCD FTMS 0 0 0 13365 102820.7578125 0.5134170135854211 5 -0.14141464233398438 7 Unmodified _YYTVRNFTL_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 47.594388314883695 0.03493607795751234 1 YYTV 4 5 43.94 0 0 3.7377 0 0 0 646.3324068658811 646.3324068658811 24.247425010840047 0 0 0 0 0.75 2 0.3252574989159953 0 + YYTV 3.7377 + + 473 + NaN NaN 135180 NaN 10410 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13373 60.054 NaN 265730 35 0 48058 0.261 + 5708 FPAGYMYPSM 10 72 598.243611247786 1194.472669562372 2 598.2431640625 MULTI HCD FTMS 0 0 0 13365 66957.59375 0.18573460958806856 -60 1.5958518981933594 8 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 50.049 0 0 4.1901 0 0 535.2426624982437 0 535.2426624982437 0 43.05970632012567 0 0 0 1.6861818737241734 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.1901 + + 269 NaN NaN 127895.2 NaN 10411 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13374 60.058 NaN 253900 35 0 36834 0.264 + 3831 EPGNQVLKRLF 11 69 434.2509290790705 1299.7309578374116 3 434.2511291503906 MULTI HCD FTMS 0 0 0 13365 74389.28125 0.5708017691697573 10 -0.2690544128417969 9 Unmodified _EPGNQVLKRLF_ REV__ENSG00000148606|ENST00000372371|POLR3A;REV__ENST00000484760.1_1_10:79773365-79779077:-|nuORF 3.5926746625661337 0.403164415885289 1 W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 8 -1 28.677 0 0 2.2064 0 0 129.09795363241784 0 129.09795363241784 0 21.687522094008997 0 0 0 0.8494850021680094 0 0 0.3807196863200844 W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 2.2064 - 69 + NaN NaN 124045.7 NaN 10412 2960 13365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13376 60.063 NaN 506010 35 0 40471 0.327 + 13208 KYLVLANML 9 64 540.8095430025903 1079.6045330719805 2 540.810302734375 MULTI HCD FTMS 0 0 0 13375 224832.703125 0.7883110031490161 -8 0.24279403686523438 1 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 65.23502041540118 0.010630085227462206 1 V{I|L}AN{M(Oxidation (M))|F}{I|L} 6 3 64.954 0 0 6.0164 0 0 404.24354355574934 0 404.24354355574934 0 44.31872208767466 0 0 0 2.2302046884880937 0 0 0 + V{I|L}AN{M(Oxidation (M))|F}{I|L} 6.0164 + + 334 NaN NaN 165422.4 NaN 10413 2961 13375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13377 60.067 NaN 619960 35 0 141980 0.261 -1 HPWMQDVLL 9 82 577.7868942659918 1153.5592355987835 2 577.787353515625 MULTI HCD FTMS 0 0 0 13375 222257.453125 0.8211931980419033 -3 0.0886383056640625 2 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 22.736283301280096 0.1639198954644489 1 V{I|L}{I|L} 3 -1 31.198 0 0 2.7045 0 0 810.316698142775 0 810.316698142775 0 16.505149978319906 0 0 0 0.5 0 0 0 V{I|L}{I|L} 2.7045 + + 54 NaN NaN 180448 NaN 10414 2961 13375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13378 60.071 NaN 440300 35 0 68814 0.261 + 24295 RYFPDLDEL 9 82 584.2869044177355 1166.559255902271 2 584.28857421875 MULTI HCD FTMS 0 0 0 13375 127175.2578125 0.6755109998135111 -2 0.0557403564453125 3 Unmodified _RYFPDLDEL_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 13.90604991867851 0.24021115267848145 1 E{I|L}C{[YC]|[HE]}VE{I|L} 8 -1 39.997 0 0 3.4287 0 0 196.1207752912125 0 196.1207752912125 0 25.393360514661367 0 0 0 1.1549471895720984 0 0.4247425010840047 0 E{I|L}C{[YC]|[HE]}VE{I|L} 3.4287 - 157 NaN NaN 145530.7 NaN 10415 2961 13375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13379 60.074 NaN 108930 35 0 16020 0.263 + 4018 ERSTGQGF 8 51 441.2094917617916 NaN 0 441.223388671875 PEAK HCD FTMS 0 0 0 13375 16474.9765625 1 0 0 4 Unmodified _ERSTGQGF_ REV__ENSG00000145700|ENST00000506364|ANKRD31;REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 9.347437153973935 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.79392 0 0 187.05330861948318 591.258836409648 778.3121450291312 0 0 0 0 0 0 0 0 0 V 0.79392 - 12 + NaN NaN 102544.8 NaN 10416 2961 13375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13381 60.079 NaN 1705700 35 0 107080 0.327 + 13171 KYLSVQGQLF 10 104 591.8294574746005 1181.644362016001 2 591.8297729492188 MULTI HCD FTMS 0 0 0 13380 751787.3125 0.10068032853571464 9 -0.24584197998046875 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 100.7086487251713 0.0001804935997887888 1 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 83.381 0 0 7.0564 7.0564 87.751 0 0 0 6.064017238953596 16.53212513775344 6.064017238953596 6.064017238953596 0 2.055462187404089 1.154901959985743 1.2302046884880937 0.9802046884880937 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KA]GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YD[KA]GQ{I|L}{M(Oxidation (M))|F} 7.0564;6.5432;6.4854;6.2808;6.2027;5.9722;5.8548;5.7676;5.7098;5.6317 -;+;-;-;-;-;-;-;-;- + 4296 NaN NaN 346534.8 NaN 10417 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13382 60.084 NaN 592820 35 0 104320 0.261 + 32943 YAIREEIVL 9 69 553.3160597713384 1104.6175666094766 2 553.3162841796875 MULTI HCD FTMS 0 0 0 13380 175958.625 0.31658352146144847 3 -0.09196853637695312 2 Unmodified _YAIREEIVL_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 49.55428908609986 0.03219431099695407 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}V{I|L} 9 0 + 56.647 0 0 5.1282 5.1282 85.152 0 0 0 11.221959910785912 18.23232539966085 11.221959910785912 8.010299956639813 0 1.4247425010840047 1.154901959985743 0.3252574989159953 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REEV{I|L}{I|L} 5.1282;4.403 +;- + 667 NaN NaN 173557.1 NaN 10418 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13383 60.087 NaN 240010 35 0 28704 0.261 + 26716 SYDHVELTF 9 72 555.7584045802503 1109.5022562273004 2 555.7589111328125 MULTI HCD FTMS 0 0 0 13380 70933.421875 0.3065582108504346 4 -0.11814498901367188 3 Unmodified _SYDHVELTF_ ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2 37.97399986684836 0.07464525285885698 1 {[QN]|[E{I|L}]|[KN]}[DP][{M(Oxidation (M))|F}E]{I|L}T{M(Oxidation (M))|F} 9 4 + 47.074 0 0 4.2428 4.2428 89.746 0 0 0 0.8881746517799627 27.408037477650634 0.8881746517799627 47.073799922781134 0 1.3494850021680094 1.3979400086720375 0.4247425010840047 0 {[QN]|[E{I|L}]|[KN]}[DP][{M(Oxidation (M))|F}E]{I|L}T{M(Oxidation (M))|F} 4.2428 - 235 NaN NaN 119463.3 NaN 10419 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13384 60.091 NaN 233080 35 0 27463 0.261 + 21040 PLSQEELQ 8 60 472.2402205445312 942.4658881558624 2 472.2399597167969 MULTI HCD FTMS 0 0 0 13380 36044.53125 0.07589422335355578 7 -0.19004440307617188 4 Unmodified _PLSQEELQ_ ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;nc|ENSG00000080802|O95628|CNOT4 25.399314129420986 0.40691472774782006 1 P{I|L}{M(Oxidation (M))|F} 3 6 36.031 0 0 3.823 0 0 0 582.2559908502561 582.2559908502561 11.593793813122062 0 0 0 0 0 2 0 0 P{I|L}{M(Oxidation (M))|F} 3.823 - 83 + NaN NaN 122504.2 NaN 10420 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13385 60.094 NaN 113310 35 0 13858 0.261 -1 0 39 424.08147261638146 NaN 0 424.0814514160156 PEAK HCD FTMS 0 0 0 13380 33893.0546875 0.23976140752516098 -49 1.274688720703125 5 NaN NaN 1 Y 1 -1 3.9794 0 0 0.4703 0 0 277.8903489419442 402.16745935611567 680.0578082980599 0 0 0 0 0 0 0 0 0 Y 0.4703 - 2 + NaN NaN 93908.6 NaN 10421 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13386 60.097 NaN 274700 35 0 18571 0.261 + 35250 YVQNQILEL 9 76 560.3060679374873 1118.5975829417746 2 560.2950439453125 MULTI HCD FTMS 0 0 0 13380 16851.041015625 0.1470052328530673 7 -0.19004440307617188 6 Unmodified _YVQNQILEL_ ENST00000426919.5_1_10:103345907-103347065:-|nuORF 11.640296217721598 0.25978676193971967 1 [YV]T[YK]TTM 8 7 34.491 0 0 3.0834 0 0 0 128.06929860023084 128.06929860023084 10.67385184988558 0 0 0 0 0 2 0.28872548999643577 0 [YV]T[YK]TTM 3.0834 - 725 NaN NaN 131108.3 NaN 10422 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13387 60.101 NaN 113690 35 0 23400 0.262 + 13938 KYQTLSLKQLF 11 48 456.93425693160555 1367.7809413950167 3 456.9344177246094 MULTI HCD FTMS 0 0 0 13380 7753.18798828125 0.1004507251898391 -4 0.1052093505859375 7 Unmodified _KYQTLSLKQLF_ ENSG00000108055|ENST00000361804|SMC3 18.3397198061782 0.2972878317988595 1 {M(Oxidation (M))|F} 1 10 21.99 0 0 1.6077 0 0 1202.7020819973588 0 1202.7020819973588 0 11.505149978319906 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6077 + + 19 + NaN NaN 93605.2 NaN 10423 2962 13380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13389 60.105 NaN 785660 35 0 68592 0.327 + 13292 KYMDVQFDF 9 77 604.7680796891424 1207.5216064450847 2 604.7677612304688 MULTI HCD FTMS 0 0 0 13388 286609 0.05413345328194531 -25 0.6409568786621094 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 1 QVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 5 50.037 0 0 4.1438 0 0 262.09541252846583 0 262.09541252846583 0 14.96485418820135 0 0 0 1.5 0 0 0.3054621874040891 QVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1438 - 1075 NaN NaN 206492.4 NaN 10424 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13390 60.11 NaN 174620 35 0 17669 0.261 + 4677 EYPDRIMNTF 10 54 643.2977950714372 1284.5810372096744 2 643.2988891601562 MULTI HCD FTMS 0 0 0 13388 65296.71875 0.02097520111948314 49 -1.3614654541015625 2 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 32.037481411007896 0.2145045983280644 1 TN[YV]{I|L}MN[{M(Oxidation (M))|F}T] 9 5 30.173 0 0 2.3488 0 0 183.09005557355732 0 183.09005557355732 0 27.698493605822637 0 0 0 1.305462187404089 0 0.3807196863200844 0 TN[YV]{I|L}MN[{M(Oxidation (M))|F}T] 2.3488 - 88 + NaN NaN 107954.3 NaN 10425 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13391 60.113 NaN 194090 35 0 17116 0.264 + 20954 PLETSAESL 9 59 473.7400985799965 945.4656442267931 2 473.73992919921875 MULTI HCD FTMS 0 0 0 13388 30932.169921875 0.25001022945358997 5 -0.14767837524414062 3 Unmodified _PLETSAESL_ ENSG00000145362|ENST00000357077|ANK2 15.847184025352803 0.2234401846867398 1 S{I|L} 2 7 26.013 0 0 2.7514 0 0 727.3396670074538 0 727.3396670074538 0 -2.429928190999391 -2.429928190999391 0 0 0.5 0 0.3054621874040891 0 + S{I|L} 2.7514 + + 40 NaN NaN 111859.6 NaN 10426 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13392 60.117 NaN 255340 35 0 14910 0.261 + 28858 TVPEQLTLL 9 67 507.29712975107356 1012.5797065689471 2 508.31097412109375 MULTI HCD FTMS 0 0 0 13388 17250.40625 0.5852361231670389 -3 0.07563018798828125 4 Unmodified _TVPEQLTLL_ REV__nc|ENSG00000235927|Q8NBZ9|NEXN-AS1 7.289230182591677 0.29575926068275815 1 {[TV]|[{I|L}S]}[KQ]N{I|L}S{I|L} 8 -1 27.603 0 0 2.726 0 0 0 126.04403272574793 126.04403272574793 6.633571775141938 0 0 0 0 0 1.5228787452803376 0.7302046884880937 0 {[TV]|[{I|L}S]}[KQ]N{I|L}S{I|L} 2.726 - 87 NaN NaN 125708 NaN 10427 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13393 60.12 NaN 122400 35 0 8220.8 0.261 + 35854 YYQNYFEKL 9 47 634.3036450504073 1266.5927371676146 2 634.3056030273438 MULTI HCD FTMS 0 0 0 13388 27449.08984375 0.013424410345624005 61 -1.4971504211425781 5 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 29.84058131909904 0.11198220037953927 1 YYQ 3 6 34.705 0 0 2.74 0 0 0 809.3867503144381 809.3867503144381 11.874081049124499 0 0 0 0 0.4247425010840047 2 0 0 + YYQ 2.74 + + 5 + NaN NaN 98568.6 NaN 10428 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13394 60.123 NaN 166790 35 0 9033 0.261 + 24043 RWSPVRPLVF 10 54 628.8667015640078 1255.7188501948156 2 628.8683471679688 MULTI HCD FTMS 0 0 0 13388 28457.166015625 0.1287573369241702 -3 0.07563018798828125 6 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 7.0370850670814 0.43805529467587806 1 RWS 3 7 21.427 0 0 1.7063 0 0 0 823.4820650690061 823.4820650690061 19.208187539523745 0 0 0 0 0 0 0 0 + RWS 1.7063 + + 13 + NaN NaN 118412.9 NaN 10429 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13395 60.127 NaN 147640 35 0 16009 0.261 + 12592 KTTARDCWML 10 49 612.7982225331841 NaN 0 612.6744995117188 PEAK HCD FTMS 0 0 0 13388 21681.412109375 1 0 0 7 Unmodified _KTTARDCWML_ REV__ENST00000530022.5_1_11:8706389-8707279:+|nuORF 2.735195868890462 0.33784334045437464 1 D{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.89647 0 0 166.15777211539313 792.3113497369749 958.4691218523681 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 0.89647 - 11 + NaN NaN 106171.4 NaN 10430 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13396 60.13 NaN 67342 35 0 5737.1 0.262 + 18053 MLSVKPPEP 9 47 499.27492101887975 NaN 0 499.27459716796875 PEAK HCD FTMS 0 0 0 13388 13614.962890625 0.07380286215556849 -26 0.6604766845703125 8 Unmodified _MLSVKPPEP_ REV__ENST00000480730.5_1_6:33272047-33272452:-|nuORF 3.5964929083625545 0.27781873954207675 1 G 1 -1 5.4846 0 0 0.55036 0 0 248.08956632410963 688.4137056940061 936.5032720181157 0 0 0 0 0 0 0 0 0 G 0.55036 - 1 + NaN NaN 90279.1 NaN 10431 2963 13388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13398 60.135 NaN 1216400 35 0 174010 0.327 + 1436 AYSAKIALF 9 80 492.2816094445605 982.548665955921 2 492.2817077636719 MULTI HCD FTMS 0 0 0 13397 649098.875 0.6461715965106325 3 -0.09199142456054688 1 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 155.02607137521346 3.513045939247001E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 9 0 + 107.91 0 0 10.982 10.982 90.6 0 0 0 2.783898217611437 2.783898217611437 2.783898217611437 2.783898217611437 0 3.048455006504028 1.6989700043360187 2.138210492164445 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F};AYSAK{I|L}A{I|L}{M(Oxidation (M))|F};[{I|L}A][K{I|L}]{[SA]|[TG]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{I|L}A]{[TV]|[{I|L}S]}[KA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{I|L}A]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[KA]S{M(Oxidation (M))|F};[{I|L}A][K{I|L}]{[SA]|[TG]}{M(Oxidation (M))|F}YA;[{I|L}A]{[TV]|[{I|L}S]}[KA]{M(Oxidation (M))|F}YA;[{I|L}A]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[KA]YA;[{I|L}A]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[KS]A 10.982;10.699;2.6601;2.255;1.7462;1.4891;1.0841;0.57521;0.089618 +;+;-;-;-;-;-;-;- + 603 NaN NaN 261651 NaN 10432 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13399 60.139 NaN 1372800 35 0 142970 0.261 + 27054 SYMGHFDLL 9 105 549.7497688734081 1097.4849848136162 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13397 731206.5 0.07059179767674728 -22 0.5658111572265625 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 88.95385435242217 0.004553379958619559 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 78.628 0 0 7.1644 7.1644 88.955 0 0 0 20.07515625508539 8.507112333562844 8.507112333562844 8.507112333562844 0 2.579689690656103 2 0.7302046884880937 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}AV{I|L}{M(Oxidation (M))|F};SYN{[WS]|[C(Carbamidomethyl (C)){I|L}]}PVV{M(Oxidation (M))|F};SYN{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{I|L}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}A{M(Oxidation (M))|F}V{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L};SYGG{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{I|L}[MT] 7.1644;6.3893;5.3352;5.0667;4.5275;4.0627;4.0462;3.8278;3.7174;3.2237 +;-;+;-;-;-;-;-;-;- + 1833 + NaN NaN 300185.6 NaN 10433 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13400 60.143 NaN 800450 35 0 132010 0.261 + 15265 LPAAGVGDMVM 11 74 538.7592438788679 1075.5039348245357 2 538.759521484375 MULTI HCD FTMS 0 0 0 13397 375917.875 0.8949324908179076 -11 0.3151206970214844 3 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 88.95385435242217 0.007759427153300959 1 AGVGD{M(Oxidation (M))|F}VM 8 3 73.313 0 0 6.8167 0 0 281.1736012189469 0 281.1736012189469 0 49.26771869775916 0 0 0 2.7856668758921828 0 0.3252574989159953 0 + AGVGD{M(Oxidation (M))|F}VM 6.8167 + + 429 NaN NaN 202882.2 NaN 10434 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13401 60.146 NaN 655930 35 0 143390 0.261 + 27360 SYSMIVNNL 9 76 528.7549745835934 1055.4953962339866 2 528.7554931640625 MULTI HCD FTMS 0 0 0 13397 248315.640625 0.544260989090397 -5 0.1280670166015625 4 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 155.02607137521346 3.513045939247001E-06 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 79.923 0 0 7.5721 7.5721 90.783 0 0 0 3.4678748622465605 49.209705101419544 3.4678748622465605 9.208187539523749 0 2.579689690656103 0 1.360924374808178 0.6694451763165201 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};[YT][W{M(Oxidation (M))|F}][EP]T{I|L} 7.5721;6.6997;6.545;6.4261;5.399;5.1972;1.0816 +;-;-;-;-;-;- + 506 NaN NaN 184659.7 NaN 10435 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13402 60.15 NaN 502360 35 0 215010 0.262 + 24046 RWSPVRPLVF 10 59 419.57998639114066 1255.718129773622 3 419.5799560546875 MULTI HCD FTMS 0 0 0 13397 117406.0859375 0.3273036388862705 -5 0.1280670166015625 5 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 7.477065608646677 0.43572640772348226 1 V{M(Oxidation (M))|F} 2 8 29.464 0 0 2.3464 0 0 991.5708205550549 0 991.5708205550549 0 26.53212513775344 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.3464 + + 15 NaN NaN 153091.6 NaN 10436 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13403 60.153 NaN 210920 35 0 9924.4 0.261 + 28579 TPVDLEVKL 9 78 507.29712975107356 1012.5797065689471 2 507.2967834472656 MULTI HCD FTMS 0 0 0 13397 66519.8046875 0.6288538326506038 -2 0.055755615234375 6 Unmodified _TPVDLEVKL_ ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP 53.31671820480216 0.026930930319421505 1 TPVD{I|L}EVK{I|L} 9 0 + 64.664 0 0 6.386 6.386 90.084 0 0 0 43.10956497947508 7.944539621753535 7.944539621753535 11.888793896675267 0 2.385151878060192 0 0 0 + + TPVD{I|L}EVK{I|L};[TP]VD{I|L}EVK{I|L};[VP]TD{I|L}EVK{I|L};[DP]VT{I|L}EVK{I|L};[VP]DT{I|L}EVK{I|L};[DP]V{[QN]|[E{I|L}]|[KN]}TVK{I|L};[VP]D{[QN]|[E{I|L}]|[KN]}TVK{I|L};[DP]V{[QN]|[E{I|L}]|[KN]}VTK{I|L};[VP]D{[QN]|[E{I|L}]|[KN]}VTK{I|L};[DP]VD{I|L}{I|L}TK{I|L} 6.386;5.2119;4.1236;3.7476;3.6242;3.3854;3.262;1.5803;1.4569;0.98571 +;+;-;-;-;-;-;-;-;- + 467 + NaN NaN 132000.1 NaN 10437 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13404 60.156 NaN 153650 35 0 8496 0.261 + 24044 RWSPVRPLVF 10 55 628.8667015640078 1255.7188501948156 2 629.3673706054688 MULTI HCD FTMS 0 0 0 13397 63129.19140625 0.3644495697525498 -4 0.10520172119140625 7 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 12.855947597645695 0.39086182057914826 1 RWS 3 7 20.177 0 0 1.6068 0 0 0 823.4824312799436 823.4824312799436 9.208187539523749 0 0 0 0 0 0 0 0 + RWS 1.6068 + + 14 + NaN NaN 111114 NaN 10438 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13405 60.16 NaN 117830 35 0 6755.3 0.261 + 19860 NYAWVYYHM 9 49 631.7689995897978 NaN 0 631.7691650390625 PEAK HCD FTMS 0 0 0 13397 40355.7109375 0.6354254415660587 13 -0.36065673828125 8 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 53.57557251787612 0.037462444036765755 1 AW 2 7 24.776 0 0 1.964 0 0 277.1061891982869 724.2779565799764 1001.3841457782632 0 0 0 0 0 1.3807196863200843 0 0 0 + AW 1.964 + + 49 + NaN NaN 104126.8 NaN 10439 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13406 60.163 NaN 125920 35 0 6583.4 0.261 + -1 DRGWALRYVC 10 44 648.3194018890292 NaN 0 648.3305053710938 PEAK HCD FTMS 0 0 0 13397 13063.6630859375 0.33362467194167034 -1 0.029571533203125 9 Carbamidomethyl (C) _DRGWALRYVC(Carbamidomethyl (C))_ REV__ENSG00000126947|ENST00000372829|ARMCX1 3.2813086475875832 0.33737594360511275 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113258 NaN 10440 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13407 60.166 NaN 141130 35 0 28178 0.262 + -1 LYICMAPIF 9 58 543.7725311613165 NaN 0 543.7869262695312 PEAK HCD FTMS 0 0 0 13397 12027.9267578125 0.6258716476507322 -1 0.029571533203125 10 Oxidation (M) _LYICM(Oxidation (M))APIF_ REV__nc|ENSG00000204701|O76001|OR2J3 14.581692164780916 0.22376707489839515 1 YQ 2 -1 13.856 0 0 1.2765 0 0 132.0705628054714 659.3192843072874 791.3898471127588 0 0 0 0 0 0.28872548999643577 0 0 0 YQ 1.2765 - 6 + NaN NaN 99559.8 NaN 10441 2964 13397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13409 60.171 NaN 3502600 35 0 578460 0.327 + -1 VLWTLCFYLFF 11 101 503.592996758803 1507.757160876609 3 503.5931701660156 MULTI HCD FTMS 0 0 0 13408 1024671.3125 0.11294435816279236 18 -0.48818206787109375 1 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 23.80106514851385 0.24970295077337615 1 {M(Oxidation (M))|F}TRN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 85.922 0 0 5.6987 0 0 564.2657857750805 0 564.2657857750805 0 66.45319789925729 0 0 0 2.6989700043360187 0 1.6237125054200234 0 {M(Oxidation (M))|F}TRN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6987 - 2139 NaN NaN 611499 NaN 10442 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13410 60.176 NaN 962410 35 0 512210 0.261 -1 0 51 427.3025079880766 852.5904630429533 2 427.3026428222656 MULTI HCD FTMS 0 0 0 13408 604671.5 0.6022898576871246 -3 0.09196853637695312 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.4063 0 0 687.5111611404127 0 687.5111611404127 0 7.552725051033063 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4063 - 29 + NaN NaN 221874.8 NaN 10443 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13411 60.179 NaN 476900 35 0 58043 0.261 + 23557 RPDDYLYSL 9 81 571.2793055216371 1140.544058110074 2 571.2798461914062 MULTI HCD FTMS 0 0 0 13408 218981.234375 0.6627332580254531 2 -0.05577850341796875 3 Unmodified _RPDDYLYSL_ ENSG00000143398|ENST00000368888|PIP5K1A;ENSG00000186111|ENST00000335312|PIP5K1C;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 29.84058131909904 0.11198220037953927 1 Y{I|L}YS{I|L} 5 4 46.186 0 0 4.0494 0 0 483.2069264142594 0 483.2069264142594 0 27.76925019195367 0 0 0 1 0 0.4247425010840047 0 + Y{I|L}YS{I|L} 4.0494 + + 504 NaN NaN 157225.4 NaN 10444 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13412 60.183 NaN 1068800 35 0 154820 0.261 + 20829 PHTQIQVYP 9 93 541.7853316413507 NaN 0 541.7691040039062 PEAK HCD FTMS 0 0 0 13408 13673.5283203125 1 0 0 4 Unmodified _PHTQIQVYP_ REV__ENSG00000112742|ENST00000369798|TTK;REV__nc|ENSG00000112742|P33981-2|TTK 15.847184025352803 0.21527282152051216 1 YT{M(Oxidation (M))|F}PHAS 7 -1 28.424 0 0 2.628 0 0 113.11820442335768 162.0559481256469 275.1741525490046 0 0 0 0 0 0 0 1.3209991640913001 0 YT{M(Oxidation (M))|F}PHAS 2.628 - 939 + NaN NaN 250810.1 NaN 10445 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13413 60.186 NaN 578210 35 0 122360 0.261 + 5926 FPDPAGKLNQF 11 83 617.3169633395062 1232.6193737458123 2 617.31689453125 MULTI HCD FTMS 0 0 0 13408 334481.0625 0.8624624131959063 -1 0.036212921142578125 5 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 46.0223103267499 0.09816448733256712 1 APDPE 5 8 43.928 0 0 3.5638 0 0 705.381639549025 0 705.381639549025 0 17.71652514092061 0 0 0 1.1989700043360187 0 0 0 APDPE 3.5638 - 462 NaN NaN 177029.6 NaN 10446 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13414 60.189 NaN 544770 35 0 80996 0.261 + 18850 NAELWQVSW 9 71 566.7748582236685 1131.535163514137 2 566.7753295898438 MULTI HCD FTMS 0 0 0 13408 209193.359375 0.6620141875140738 59 -1.431365966796875 6 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 1 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 9 6 + 59.007 0 0 5.2148 5.2148 88.033 0 0 0 1.7120467177745269 34.392653074926045 1.7120467177745269 11.593793813122062 0 2.110924374808178 0 0.805462187404089 0 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW;[{M(Oxidation (M))|F}E]{[VA]|[{I|L}G]}HASVSW;{[CT]|[{M(Oxidation (M))|F}G]}{[QN]|[E{I|L}]|[KN]}HASVSW;[YR]{[SA]|[TG]}[YT]VSW;{[CT]|[{M(Oxidation (M))|F}G]}S[HD]VVVSW;[YR]{M(Oxidation (M))|F}A{[CT]|[{M(Oxidation (M))|F}G]}VS{[DA]|[EG]};[YR]{M(Oxidation (M))|F}{[MG]|[TS]}SW[VS];[YQ][HD]VVVSW;{[CT]|[{M(Oxidation (M))|F}G]}SV{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]S{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}SV{M(Oxidation (M))|F}{[RE]|[WV]}S{[CT]|[{M(Oxidation (M))|F}G]} 5.2148;4.1902;3.9704;3.7031;3.3374;3.1108;3.0454;3.0262;2.931;2.4153 -;-;-;-;-;-;-;-;-;- 728 NaN NaN 165914.3 NaN 10447 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13415 60.193 NaN 206820 35 0 14818 0.261 -1 VWMRSPLSTF 10 62 620.3128350582227 1238.6111171832454 2 620.3126220703125 MULTI HCD FTMS 0 0 0 13408 39318.46875 0.38543104937049566 1 -0.02617645263671875 7 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ ENST00000558985.5_1_15:60656692-60690187:-|nuORF;ENST00000559725.5_1_15:60656692-60682421:-|nuORF 28.233623360808718 0.24751404419789966 1 S[{I|L}P]ST{M(Oxidation (M))|F} 6 -1 37.752 0 0 3.048 0 0 588.2876454084 0 588.2876454084 0 16.064921830680703 0 0 0 1.4247425010840047 0 0.3494850021680094 0 S[{I|L}P]ST{M(Oxidation (M))|F} 3.048 + + 127 NaN NaN 112822.8 NaN 10448 2965 13408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13417 60.197 NaN 5135000 35 0 410350 0.327 + 34709 YPVEIHEYL 9 115 581.7924129009604 1161.5702728687206 2 581.7929077148438 MULTI HCD FTMS 0 0 0 13416 3784138.25 1 0 0 1 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 225.63253280303684 3.884279688775432E-24 1 YPVE{I|L}HEY{I|L} 9 0 + 118.16 0 0 10.172 10.172 91.086 0 0 0 4.361818737241734 4.361818737241734 4.361818737241734 4.361818737241734 0 3.274227503252014 1.6989700043360187 2.159379381312206 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};[VP]YE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;YP{I|L}D{I|L}HEY{I|L};YPYH{I|L}E{I|L}D{I|L};YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};[VP]YE{I|L}HYE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}EHY{I|L} 10.172;9.7968;9.0435;9.0155;8.9913;8.825;8.7453;8.7036;8.6816;8.372 +;+;-;-;-;-;-;-;-;- + 16191 + NaN NaN 825866.8 NaN 10449 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13418 60.202 NaN 1001500 35 0 250750 0.261 -1 LITMMLLVD 9 77 532.7904872455442 1063.5664215578884 2 533.3087158203125 MULTI HCD FTMS 0 0 0 13416 25703.681640625 0.6813502225833922 -1 0.02617645263671875 2 Oxidation (M) _LITM(Oxidation (M))MLLVD_ ENSG00000133083|ENST00000360631|DCLK1;ENST00000486239.1_1_13:36379748-36382438:-|nuORF;nc|ENSG00000133083|O15075-2|DCLK1;nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1 23.1484247019978 0.1603590852062899 1 {I|L}{I|L}TC(Carbamidomethyl (C))HP{I|L}V 8 -1 42.105 0 0 3.9589 0 0 0 127.03519065365721 127.03519065365721 19.88662744221054 0 0 0 0 0.4604093769761876 1.3979400086720375 1.610924374808178 0 {I|L}{I|L}TC(Carbamidomethyl (C))HP{I|L}V 3.9589 - 1282 NaN NaN 239924.3 NaN 10450 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13419 60.205 NaN 626520 35 0 191660 0.261 + 32002 VYPLMKEYF 9 55 603.2993101230447 1204.5840673128894 2 603.299560546875 MULTI HCD FTMS 0 0 0 13416 405910.25 0.09673053564581552 56 -1.3800010681152344 3 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 47.594388314883695 0.03493607795751234 1 VYP{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 59.858 0 0 4.9692 0 0 0 435.1996195919454 435.1996195919454 28.65987537940164 0 0 0 0 0.9247425010840047 2 0 0 VYP{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9692 - 113 + NaN NaN 175294.3 NaN 10451 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13420 60.209 NaN 513500 35 0 155090 0.262 + 27247 SYPAKLSFI 9 55 513.2867718640636 1024.558990794927 2 513.2868041992188 MULTI HCD FTMS 0 0 0 13416 199882.4375 0.5690418416127946 3 -0.0718994140625 4 Unmodified _SYPAKLSFI_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1 20.41453444215458 0.18397929046831515 1 {M(Oxidation (M))|F}{I|L} 2 7 23.271 0 0 2.2713 0 0 746.3968726822483 0 746.3968726822483 0 8.566147098514703 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.2713 + + 49 NaN NaN 158937 NaN 10452 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13421 60.212 NaN 364120 35 0 46442 0.261 + 5709 FPAGYMYPSM 10 69 598.243611247786 1194.472669562372 2 598.2431030273438 MULTI HCD FTMS 0 0 0 13416 121520.484375 0.3370873781189846 -54 1.4190406799316406 5 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 64.23631603340823 0.02601519761747251 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 51.23 0 0 4.2889 0 0 535.2435169904312 0 535.2435169904312 0 41.933115814076345 0 0 0 1.774227503252014 0 0.3054621874040891 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.2889 + + 254 NaN NaN 146088.2 NaN 10453 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13422 60.215 NaN 238400 35 0 21116 0.261 + 24600 RYLPQCSYF 9 80 588.7798266917426 1175.5451004502852 2 588.77978515625 MULTI HCD FTMS 0 0 0 13416 96489.109375 1 0 0 6 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 22.736283301280096 0.1639198954644489 1 Y{I|L} 2 7 20.573 0 0 1.7501 0 0 881.3882457373919 0 881.3882457373919 0 1.5542640477439633 0 0 0 0.3494850021680094 0 0 0 + Y{I|L} 1.7501 + + 108 NaN NaN 117131.2 NaN 10454 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13423 60.219 NaN 473340 35 0 103380 0.264 + 22204 QLPHPLARFQI 11 49 440.59070454753385 1318.7502842428016 3 440.5909423828125 MULTI HCD FTMS 0 0 0 13416 91032.0078125 0.3672523850089152 -2 0.062389373779296875 7 Unmodified _QLPHPLARFQI_ TCTN2|p.T631A|1|0.15|ENSG00000168778|chr12:123706847-123706847|A/G|missense_variant 16.274544907608252 0.3152817683996968 1 VGM{M(Oxidation (M))|F}Q{I|L} 6 8 57.652 0 0 4.3717 0 0 625.4028243812767 0 625.4028243812767 0 42.1669877129645 0 0 0 1.5 0 0 0.8494850021680094 VGM{M(Oxidation (M))|F}Q{I|L} 4.3717 - 89 + NaN NaN 154909.6 NaN 10455 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13424 60.222 NaN 226600 35 0 25277 0.261 + 33011 YAYDGKDYLAL 11 44 646.3140699622788 1290.6135869913576 2 646.313232421875 MULTI HCD FTMS 0 0 0 13416 93559.109375 0.7397568745646605 -2 0.062389373779296875 8 Unmodified _YAYDGKDYLAL_ ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G 29.43715596616401 0.20497810090165547 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L} 11 0 + 59.926 0 0 4.6432 4.6432 81.618 0 0 0 16.6940260964304 45.461985488314944 16.6940260964304 1.7609125905568135 0 1.9247425010840047 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]{NN|[MP]|[D{I|L}]|[EV]}YA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]{NN|[MP]|[D{I|L}]|[EV]}AY{I|L} 4.6432;4.5068;3.8861;3.8861 +;-;-;- + 131 NaN NaN 113394.3 NaN 10456 2966 13416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13426 60.227 NaN 1167400 35 0 80744 0.327 + 13172 KYLSVQGQLF 10 96 591.8294574746005 1181.644362016001 2 591.8297119140625 MULTI HCD FTMS 0 0 0 13425 609215.6875 0.08158695224935877 14 -0.3800163269042969 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 125.0377797344192 2.9548649632433943E-05 1 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 88.752 0 0 7.5109 7.5109 87.605 0 0 0 3.7962848496947146 16.53212513775344 3.7962848496947146 3.7962848496947146 0 2.305462187404089 1.3010299956639813 1.2856668758921828 0.9476212463643423 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KA]GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YD[KA]GQ{I|L}{M(Oxidation (M))|F} 7.5109;7.1896;6.7704;6.7353;6.4141;6.3484;6.059;6.0271;5.9948;5.6078 -;+;-;-;-;-;-;-;-;- + 3524 NaN NaN 248771.4 NaN 10457 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13427 60.231 NaN 930990 35 0 127780 0.261 + 19028 NDAVEEMVCV 10 90 562.7334357182915 1123.452318503383 2 562.7337036132812 MULTI HCD FTMS 0 0 0 13425 517069.8125 0.6582817886806097 1 -0.02611541748046875 2 Oxidation (M) _NDAVEEM(Oxidation (M))VCV_ ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12;TTC12-LUC7L2|1|fusion 60.07390631473393 0.04115296186411585 1 NAVDEE{I|L}{I|L} 8 6 103.82 0 0 9.2407 0 0 0 237.00095544986564 237.00095544986564 78.58115224012727 0 0 0 0 2.8494850021680094 1.6989700043360187 1.4876954943324545 0 NAVDEE{I|L}{I|L} 9.2407 - 869 + NaN NaN 228891.9 NaN 10458 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13428 60.235 NaN 824130 35 0 90473 0.261 + 2640 DVEIIFNER 9 100 567.7930595233632 1133.5715661135264 2 568.31298828125 MULTI HCD FTMS 0 0 0 13425 10966.646484375 0.21055516452214948 4 -0.09809494018554688 3 Unmodified _DVEIIFNER_ ENSG00000078328|ENST00000550418|RBFOX1;ENSG00000100320|ENST00000695854|RBFOX2;ENSG00000167281|ENST00000693108|RBFOX3;ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000167281|A6NFN3|RBFOX3 17.44264345198275 0.2096557692338702 1 VPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 8 53.383 0 0 4.7093 0 0 62.95780894322622 0 62.95780894322622 0 13.553129282952753 0 0 0 0.25 0 0.5 0 VPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 4.7093 - 1999 + NaN NaN 210913.8 NaN 10459 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13429 60.238 NaN 396270 35 0 96668 0.261 -1 HPWMQDVLL 9 75 577.7868942659918 1153.5592355987835 2 577.7872924804688 MULTI HCD FTMS 0 0 0 13425 106515.5078125 0.3935517539311055 3 -0.07186126708984375 4 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 15.847184025352803 0.2234401846867398 1 MWWW{I|L}{I|L} 6 -1 27.14 0 0 2.3527 0 0 220.07669264961095 0 220.07669264961095 0 13.952424927286842 0 0 0 0.5 0 0 0 MWWW{I|L}{I|L} 2.3527 - 117 NaN NaN 146866.2 NaN 10460 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13430 60.242 NaN 414180 35 0 71305 0.261 + 2754 DYAEVSNTF 9 67 523.2271438395985 1044.439734745997 2 523.2271118164062 MULTI HCD FTMS 0 0 0 13425 114362.21875 0.7411779585900531 -1 0.02960205078125 5 Unmodified _DYAEVSNTF_ ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant 114.18643581695662 0.002258955990713129 1 {[YD]|[{M(Oxidation (M))|F}M]}AEVSNT{M(Oxidation (M))|F} 9 0 + 91.837 0 0 8.793 8.793 92.695 0 0 0 11.75993551936459 76.34356794283349 11.75993551936459 9.208187539523749 0 2.9604093769761874 2 0.6861818737241735 0 + + {[YD]|[{M(Oxidation (M))|F}M]}AEVSNT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AEVSGGT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SEVSNT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SEVSGGT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[KA]DDT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[C(Carbamidomethyl (C))K][DP]T{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AE[KA][WY];{[{M(Oxidation (M))|F}C]|[YS]}[QA]VEAM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QHHNT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[KA]E[WY] 8.793;7.9113;6.2253;5.3437;4.1015;3.4636;3.4135;3.2706;2.6614;2.6258 +;-;-;-;-;-;-;-;-;- + 682 NaN NaN 141885.6 NaN 10461 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13431 60.245 NaN 250540 35 0 31125 0.261 -1 HVGAPMPCNLI 11 69 584.2869044177355 1166.559255902271 2 584.2875366210938 MULTI HCD FTMS 0 0 0 13425 101591.578125 0.5396193386376288 4 -0.09809494018554688 6 Oxidation (M) _HVGAPM(Oxidation (M))PCNLI_ ENSG00000151726|ENST00000281455|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1 12.240655878213236 0.35042917576941135 1 PVE{I|L} 4 -1 38.175 0 0 3.2725 0 0 710.303722400245 0 710.303722400245 0 23.325549629692116 0 0 0 0.9247425010840047 0 0 0 PVE{I|L} 3.2725 - 185 NaN NaN 124861.7 NaN 10462 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13432 60.248 NaN 241240 35 0 20362 0.261 + 20360 NYSYLHCEW 9 74 607.7496269843251 1213.4847010354501 2 607.7507934570312 MULTI HCD FTMS 0 0 0 13425 54418.8359375 0.4895101174939084 1 -0.02611541748046875 7 Unmodified _NYSYLHCEW_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 58.678817012210395 0.019429721296335044 1 [YN][HN]TGYC(Carbamidomethyl (C))[VS] 10 7 + 53.292 0 0 4.3917 4.3917 84.282 0 0 0 1.5839172150142957 32.63026701989345 1.5839172150142957 8.882104921644455 0 1.5682503180159344 2 0 0.6694451763165201 [YN][HN]TGYC(Carbamidomethyl (C))[VS];[YN][HN]TGYS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.3917;3.6597 -;- 188 NaN NaN 125368.2 NaN 10463 2967 13425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13434 60.253 NaN 620570 35 0 74707 0.327 + 24719 RYLVEVEEL 9 82 575.3110227958352 1148.6074926584704 2 575.3109741210938 MULTI HCD FTMS 0 0 0 13433 309634.875 0.7727170032950167 -4 0.11810684204101562 1 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 86.33184430468982 0.004622086694044132 1 [Y{I|L}]RVEVEE{I|L} 9 2 + 84.275 0 0 7.3371 7.3371 91.394 0 0 0 10 16.478174818886373 10 10 0 2.1549471895720984 1 0.6861818737241735 0 [Y{I|L}]RVEVEE{I|L};[YR]{I|L}VEVEE{I|L};[VP][HV]VEVEE{I|L};[Y{I|L}]RVEEEV{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}VEV{[DS]|[MA]|[CV]|TT}V{I|L};{[QN]|[E{I|L}]|[KN]}EV{M(Oxidation (M))|F}V{[DS]|[MA]|[CV]|TT}V{I|L};[Y{I|L}]RVEEE{I|L}V;[YR]{I|L}VEEEV{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}{M(Oxidation (M))|F}V{[DS]|[MA]|[CV]|TT}V{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}VEV{[DS]|[MA]|[CV]|TT}{I|L}V 7.3371;6.4665;6.0113;4.4099;3.9425;3.8575;3.5543;3.5393;3.4382;3.0868 -;+;-;-;-;-;-;-;-;- + 1209 NaN NaN 182868.7 NaN 10464 2968 13433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13435 60.258 NaN 255880 35 0 14836 0.261 + 35388 YYDVAKQLL 9 72 556.8031301964952 1111.5917074597903 2 556.8031616210938 MULTI HCD FTMS 0 0 0 13433 102084.4609375 0.9914752533545386 2 -0.045745849609375 2 Unmodified _YYDVAKQLL_ ANKRD11|p.T278Hfs*71|1|0.25|ENSG00000167522|chr16:89286099-89286100|-/G|frameshift_variant;ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF 55.50274090549119 0.023872834264864425 1 YYDVAKQ{I|L}{I|L} 9 0 + 80.275 0 0 7.2216 7.2216 90.198 0 0 0 16.78456906244314 16.478174818886373 16.478174818886373 9.208187539523749 0 2.25 2 0.3494850021680094 0 + + YYDVAKQ{I|L}{I|L};YYDVAK[AG]{I|L}{I|L};YYDVA[Q{I|L}]K{I|L};YY[VS]{[QV]|[N{I|L}]|[RA]|[KV]}Q{I|L}{I|L};YYVV{[QS]|[NT]}Q{I|L}{I|L};YY[NP][{I|L}T]TK{I|L};YY[NP][{I|L}T]{I|L}[KT] 7.2216;6.3932;5.6587;4.3266;3.739;3.2089;1.0437 +;-;-;-;-;-;- + 242 NaN NaN 120908.2 NaN 10465 2968 13433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13436 60.261 NaN 171730 35 0 13682 0.261 + 4678 EYPDRIMNTF 10 50 643.2977950714372 1284.5810372096744 2 643.7996215820312 MULTI HCD FTMS 0 0 0 13433 40615.4453125 0.01938274418398778 54 -1.3242835998535156 3 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 45.739877483867886 0.09559676962230333 1 MNT{M(Oxidation (M))|F} 4 6 34.399 0 0 2.6778 0 0 773.3718128888687 0 773.3718128888687 0 21.211375162600703 0 0 0 0.8252574989159953 0 0.5 0 + MNT{M(Oxidation (M))|F} 2.6778 + + 27 NaN NaN 110914.3 NaN 10466 2968 13433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13437 60.264 NaN 173580 35 0 28435 0.261 + 1629 AYYPAQGVQQF 11 43 636.306497881883 1270.598442830566 2 636.3057861328125 MULTI HCD FTMS 0 0 0 13433 75722.3671875 1 0 0 4 Unmodified _AYYPAQGVQQF_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 51.629811660486645 0.07472562200723704 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA]QRQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 10 2 + 66.7 0 0 5.2495 5.2495 85.932 0 0 0 24.25968732272281 59.710084362531575 24.25968732272281 9.164539485499255 0 2.305462187404089 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA]QRQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA][AG]RQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA]Q[VG]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA]QR[AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA]QR{[MG]|[TS]}{[QS]|[NT]} 5.2495;4.5282;4.5282;4.5282;4.1347 -;-;+;-;- + 211 NaN NaN 124119.3 NaN 10467 2968 13433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13439 60.269 NaN 1353400 35 0 142900 0.327 + 27055 SYMGHFDLL 9 104 549.7497688734081 1097.4849848136162 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13438 864665.8125 0.0834761645226079 -17 0.4655952453613281 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 115.6920309560759 0.002013163348980568 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 56.749 0 0 5.1708 5.1708 89.34 0 0 0 5.6424927368725974 13.645614827714425 5.6424927368725974 18.028320577983934 0 1.9291746928241125 0 0.7614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}AV{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}[{I|L}T]C{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}[YR]{M(Oxidation (M))|F}SY{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}VV[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YR]{M(Oxidation (M))|F}YS 5.1708;3.5281;3.3982;2.7435;2.4719;2.3987;2.3557;2.2879;2.2291;1.7459 +;-;-;-;-;-;-;-;-;- + 1139 NaN NaN 291912.6 NaN 10468 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13440 60.274 NaN 730080 35 0 68859 0.261 + 13293 KYMDVQFDF 9 77 604.7680796891424 1207.5216064450847 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13438 348391.5625 0.06580267323223514 -19 0.5178146362304688 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 80.6760300276096 0.005633624786464751 1 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 3 + 71.15 0 0 5.8923 5.8923 85.543 0 0 0 5.752574989159953 8.167790332608575 5.752574989159953 5.752574989159953 0 1.5 1.3979400086720375 0.6307196863200843 0.6989700043360187 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DP]VPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QDV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 5.8923;5.4159;4.6533;4.5545;4.5053;4.5006;4.403;4.3843;4.3796;4.1298 -;+;-;-;-;-;-;-;-;- + 1651 NaN NaN 207483.9 NaN 10469 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13441 60.277 NaN 597020 35 0 62171 0.262 + 1437 AYSAKIALF 9 68 492.2816094445605 982.548665955921 2 492.2817077636719 MULTI HCD FTMS 0 0 0 13438 212735.859375 0.2117764722476297 8 -0.22636795043945312 3 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 103.35351024395868 0.004027461563756449 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 9 0 + 87.595 0 0 8.9151 8.9151 98.398 0 0 0 22.376430167995878 72.02230013958207 22.376430167995878 87.59549403942451 0 2.774227503252014 1.5228787452803376 1.4604093769761874 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 8.9151 + + 236 NaN NaN 175716.5 NaN 10470 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13442 60.281 NaN 688120 35 0 79037 0.261 + 15266 LPAAGVGDMVM 11 69 538.7592438788679 1075.5039348245357 2 538.7596435546875 MULTI HCD FTMS 0 0 0 13438 303081.8125 0.7215346207791556 -6 0.16386032104492188 4 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 88.95385435242217 0.007759427153300959 1 AGVGD{M(Oxidation (M))|F}VM 8 3 73.556 0 0 6.8392 0 0 281.17344863105626 0 281.17344863105626 0 40.05571607740464 0 0 0 2.829689690656103 0 0.3054621874040891 0 + AGVGD{M(Oxidation (M))|F}VM 6.8392 + + 602 NaN NaN 190266.2 NaN 10471 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13443 60.284 NaN 321640 35 0 23514 0.261 + 28351 TPDGIDLRL 9 59 500.27723165534763 998.5399103774953 2 500.27734375 MULTI HCD FTMS 0 0 0 13438 45320.49609375 0.5035120714381873 1 -0.02956390380859375 5 Unmodified _TPDGIDLRL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 33.4449034751529 0.0954363425218424 1 TPDG{I|L}D{I|L}[R{I|L}] 9 0 + 55.785 0 0 5.5867 5.5867 92.269 0 0 0 7.02484585515883 4.762036441594191 4.762036441594191 55.78517508538184 0 0.8494850021680094 1.3010299956639813 0 0 + + TPDG{I|L}D{I|L}[R{I|L}] 5.5867 + + 183 + NaN NaN 130935.6 NaN 10472 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13444 60.287 NaN 254170 35 0 32886 0.261 + 21299 PSAPSKALP 9 70 434.2511213557879 NaN 0 434.25115966796875 PEAK HCD FTMS 0 0 0 13438 70786.28125 0.8167859395877382 -19 0.5178146362304688 6 Unmodified _PSAPSKALP_ REV__ENST00000481082.1_1_1:157512505-157514867:-|nuORF 3.5964929083625545 0.27781873954207675 1 K 1 -1 3.9794 0 0 0.45926 0 0 304.1285405186165 431.2412508600219 735.3697913786384 0 0 0 0 0 0 0 0 0 K 0.45926 + + 9 + NaN NaN 118295.9 NaN 10473 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13445 60.291 NaN 195660 35 0 18210 0.261 + 31884 VYNEQIRDLL 10 65 631.840551134899 1261.6665493365979 2 631.8407592773438 MULTI HCD FTMS 0 0 0 13438 67426.953125 0.9391527108347862 -1 0.01618194580078125 7 Unmodified _VYNEQIRDLL_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 18.85280530406059 0.3347692369435796 1 [YN]VE[Q{I|L}]RD{I|L}{I|L} 10 2 + 45.845 0 0 3.6337 3.6337 89.013 0 0 0 15.89149333932717 26.179315557082386 15.89149333932717 45.84507800221289 0 1.0044321917401078 1.6989700043360187 0 1.0114393726401687 [YN]VE[Q{I|L}]RD{I|L}{I|L} 3.6337 - 124 NaN NaN 114938.3 NaN 10474 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13446 60.294 NaN 206160 35 0 18917 0.264 + 20949 PLEDQTQL 8 72 472.2402205445312 942.4658881558624 2 472.2405700683594 MULTI HCD FTMS 0 0 0 13438 38569.80078125 0.08121135089513302 14 -0.390106201171875 8 Unmodified _PLEDQTQL_ ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18288394-18288718:+|nuORF;IFI30|p.L222F|1|0.42|ENSG00000216490|chr19:18177738-18177738|C/T|missense_variant 30.636539890814138 0.35121444018244025 1 P{I|L}{M(Oxidation (M))|F}M 4 6 45.662 0 0 4.8449 0 0 0 451.2196444147094 451.2196444147094 20.445312593723983 0 0 0 0 0 2 0 0 P{I|L}{M(Oxidation (M))|F}M 4.8449 - 115 + NaN NaN 106392.9 NaN 10475 2969 13438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13448 60.299 NaN 873240 35 0 192130 0.327 + 27361 SYSMIVNNL 9 83 528.7549745835934 1055.4953962339866 2 528.7553100585938 MULTI HCD FTMS 0 0 0 13447 409512.15625 0.8975733088909861 1 -0.026233673095703125 1 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 142.0795815696625 1.719916958814042E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 73.718 0 0 6.9842 6.9842 87.304 0 0 0 3.8317214869663587 51.71114871526143 3.8317214869663587 5.273109370204438 0 2.610924374808178 0 1.0451140161145327 0.3054621874040891 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VQVN;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}V[AG]VN;[YT]{I|L}V{[QN]|[E{I|L}]|[KN]}DG{M(Oxidation (M))|F};[YT]{I|L}V{[QN]|[E{I|L}]|[KN]}S[MT] 6.9842;6.4846;6.1118;6.1118;5.797;5.6122;4.9541;4.9246;2.5721;1.6834 +;-;-;-;-;-;-;-;-;- + 586 NaN NaN 218542.8 NaN 10476 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13449 60.303 NaN 899580 35 0 401530 0.262 + 24047 RWSPVRPLVF 10 65 419.57998639114066 1255.718129773622 3 419.58026123046875 MULTI HCD FTMS 0 0 0 13447 335014.59375 0.9339506954754674 1 -0.026233673095703125 2 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 10.315234532428624 0.4146267933501748 1 R[{I|L}P]V{M(Oxidation (M))|F} 5 5 34.208 0 0 2.7242 0 0 625.3334384667845 0 625.3334384667845 0 28.723637474483468 0 0 0 1.5 0 0 0 + R[{I|L}P]V{M(Oxidation (M))|F} 2.7242 + + 34 + NaN NaN 214815.2 NaN 10477 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13450 60.307 NaN 712110 35 0 84360 0.261 + 12942 KYIATDFTL 9 78 536.2896824177446 1070.5648119022892 2 536.2901000976562 MULTI HCD FTMS 0 0 0 13447 237095.5625 0.8787722809983481 2 -0.049068450927734375 3 Unmodified _KYIATDFTL_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 114.20165948288297 0.0022564706844261533 1 [YK]{I|L}ATD{M(Oxidation (M))|F}T{I|L} 9 0 + 76.124 0 0 7.1107 7.1107 90.689 0 0 0 4.762036441594191 52.05977185236079 4.762036441594191 9.259687322722812 0 2.5 0 0.7302046884880937 0 + + [YK]{I|L}ATD{M(Oxidation (M))|F}T{I|L};[Y{I|L}]KATD{M(Oxidation (M))|F}T{I|L};[YK]{I|L}AES{M(Oxidation (M))|F}T{I|L};[Y{I|L}]KAES{M(Oxidation (M))|F}T{I|L};[YK]{I|L}G{[ET]|[MV]}{M(Oxidation (M))|F}T{I|L};[Y{I|L}]{[MS]|[{M(Oxidation (M))|F}A]}TA[TA]T{I|L};[{I|L}T]{M(Oxidation (M))|F}[KS]D{M(Oxidation (M))|F}T{I|L};[YK]{I|L}{[{M(Oxidation (M))|F}D]|MM}[TA]T{I|L};[{I|L}T]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[TA]T{I|L};[Y{I|L}]KG{[ET]|[MV]}{M(Oxidation (M))|F}T{I|L} 7.1107;6.2458;5.7321;4.8672;4.2441;4.1934;3.8212;3.6126;3.441;3.3792 +;-;-;-;-;-;-;-;-;- + 542 NaN NaN 207993.4 NaN 10478 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13451 60.31 NaN 248680 35 0 14511 0.261 + 24045 RWSPVRPLVF 10 66 628.8667015640078 1255.7188501948156 2 628.8668823242188 MULTI HCD FTMS 0 0 0 13447 186717.96875 0.8448244072842691 4 -0.114715576171875 4 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 35.079672537005266 0.18810481106627508 1 RWS 3 7 27.096 0 0 2.1578 0 0 0 823.4841684717878 823.4841684717878 14.392653074926043 0 0 0 0 0.805462187404089 0 0 0 + RWS 2.1578 + + 105 + NaN NaN 114527.8 NaN 10479 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13452 60.314 NaN 196220 35 0 18807 0.263 + 28580 TPVDLEVKL 9 62 507.29712975107356 1012.5797065689471 2 507.2970275878906 MULTI HCD FTMS 0 0 0 13447 69182.1875 0.6540230231419032 4 -0.114715576171875 5 Unmodified _TPVDLEVKL_ ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP 34.93206674587334 0.08860942999206235 1 TPVD{[QN]|[E{I|L}]|[KN]}V[K{I|L}] 9 0 + 28.315 0 0 2.7964 2.7964 86.837 0 0 0 8.67407110919585 2.9221525151212226 2.9221525151212226 19.952884170380383 0 1.1694451763165201 0 0 0 + + TPVD{[QN]|[E{I|L}]|[KN]}V[K{I|L}];{[QN]|[E{I|L}]|[KN]}VV[{I|L}V]VEN 2.7964;0.82585 +;- + 207 + NaN NaN 109300.5 NaN 10480 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13453 60.317 NaN 203160 35 0 29053 0.261 + 9028 HPELVEGLVL 10 60 553.3160597713384 1104.6175666094766 2 553.3165893554688 MULTI HCD FTMS 0 0 0 13447 94262.9296875 0.16959720061316497 11 -0.3081550598144531 6 Unmodified _HPELVEGLVL_ ENSG00000101079|ENST00000349004|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;nc|ENSG00000101079|Q9UGV2-3|NDRG3 9.38312468134398 0.42334543440173333 1 {I|L}V{I|L} 3 7 29.693 0 0 2.6881 0 0 761.370897361525 0 761.370897361525 0 11.73393743112328 0 0 0 0.5 0 0 0 + {I|L}V{I|L} 2.6881 + + 88 NaN NaN 109152.5 NaN 10481 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13454 60.32 NaN 347800 35 0 29407 0.261 + 35756 YYLSKIEEL 9 65 579.30793259274 1156.60131225228 2 579.3074340820312 MULTI HCD FTMS 0 0 0 13447 56958.70703125 0.13322858036912652 15 -0.4127006530761719 7 Unmodified _YYLSKIEEL_ ENSG00000087191|ENST00000310144|PSMC5;nc|ENSG00000087191|P62195-2|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant 31.26834338654808 0.10542797264966089 1 YY{I|L}S 4 5 44.367 0 0 3.836 0 0 0 627.3361300104124 627.3361300104124 28.169015600442574 0 0 0 0 0.7059771852360797 2 0.3494850021680094 0 + YY{I|L}S 3.836 + + 47 + NaN NaN 145493.3 NaN 10482 2970 13447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13456 60.325 NaN 1149900 35 0 614800 0.327 -1 0 60 427.3025079880766 852.5904630429533 2 427.30267333984375 MULTI HCD FTMS 0 0 0 13455 739734.9375 0.7368213157608205 3 -0.08848190307617188 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.4631 0 0 687.5113289870924 0 687.5113289870924 0 5.919693766594703 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4631 - 35 + NaN NaN 261577.1 NaN 10483 2971 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13457 60.33 NaN 1078900 35 0 171510 0.261 + 11591 IYTFPHASF 9 90 541.7689231061971 1081.5232932791941 2 541.7691040039062 MULTI HCD FTMS 0 0 0 13455 530946.625 0.7252234174757315 3 -0.08848190307617188 2 Unmodified _IYTFPHASF_ ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 141.82661023413823 1.746659319327287E-05 1 {I|L}YT{M(Oxidation (M))|F}PHAS{M(Oxidation (M))|F} 9 0 + 101.16 0 0 9.3534 9.3534 97.017 0 0 0 77.68819968311044 16.478174818886373 16.478174818886373 27.155177696945287 0 1.8882104921644451 2 1.350576203518622 0 + + {I|L}YT{M(Oxidation (M))|F}PHAS{M(Oxidation (M))|F};{I|L}YT{M(Oxidation (M))|F}[HS][PA]{M(Oxidation (M))|F};[Y{I|L}]K[RD][C(Carbamidomethyl (C))D]{I|L};{I|L}Y{[DS]|[MA]|[CV]|TT}[RN]VC{I|L};{I|L}[QA]ET{[WT]|[RM]}S{M(Oxidation (M))|F};[Y{I|L}][YN]W[NP]{I|L};[Y{I|L}]G[YG]W[NP]{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AKP[DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]S{M(Oxidation (M))|F}Y{I|L} 9.3534;6.8425;2.6909;2.4955;2.3646;2.2807;2.0982;1.9244;1.0172;0.73478 +;-;-;-;-;-;-;-;-;- + 1317 + NaN NaN 242069.2 NaN 10484 2971 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13458 60.333 NaN 437100 35 0 60154 0.261 + 5927 FPDPAGKLNQF 11 79 617.3169633395062 1232.6193737458123 2 617.3165893554688 MULTI HCD FTMS 0 0 0 13455 263427.53125 0.6792502469526658 5 -0.14766311645507812 3 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 22.65808497894818 0.2596617744649775 1 Q{I|L}W 3 10 25.662 0 0 2.0819 0 0 787.3831654279312 0 787.3831654279312 0 10.159940911636765 0 0 0 0.6989700043360187 0 0 0 Q{I|L}W 2.0819 - 193 NaN NaN 148986.4 NaN 10485 2971 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13459 60.336 NaN 291850 35 0 31150 0.262 + 4751 EYTAKIALL 9 55 511.2999066263948 1020.5852603195896 2 511.7853698730469 MULTI HCD FTMS 0 0 0 13455 17861.279296875 0.03569394766382571 23 -0.6307792663574219 4 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 13.90604991867851 0.24021115267848145 1 P{I|L}{I|L} 3 7 13.2 0 0 1.2934 0 0 679.3538341938978 0 679.3538341938978 0 2.230749808046328 0 0 0 0.27422750325201406 0 0 0 P{I|L}{I|L} 1.2934 - 14 + NaN NaN 123295.3 NaN 10486 2971 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13460 60.34 NaN 133840 35 0 28808 0.261 + 1674 CEGHNSDF 8 36 454.66261060321995 NaN 0 454.662841796875 PEAK HCD FTMS 0 0 0 13455 47334.4453125 0.8671181481069887 -1 0.026233673095703125 5 Unmodified _CEGHNSDF_ ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 4.75600775471527 0.38822285293237185 1 N 1 7 1.9897 0 0 0.2193 0 0 593.2021305308556 197.04567896060783 790.2478094914634 0 0 0 0 0 0 0 0 0 + N 0.2193 + + 2 + NaN NaN 102633.7 NaN 10487 2971 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13461 60.343 NaN 228070 35 0 32734 0.261 -1 0 65 516.3014341890207 515.2941577224207 1 516.3009643554688 MULTI HCD FTMS 0 0 0 13455 60988.5859375 0.2885786490350361 -15 0.4134635925292969 6 NaN NaN 1 G{M(Oxidation (M))|F} 2 -1 17.959 0 0 3.4852 0 0 293.1945311128488 0 293.1945311128488 0 7.501225267834 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 3.4852 - 14 + NaN NaN 126734.9 NaN 10488 2971 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13463 60.348 NaN 1979200 35 0 178480 0.327 + 34710 YPVEIHEYL 9 104 581.7924129009604 1161.5702728687206 2 581.792724609375 MULTI HCD FTMS 0 0 0 13462 1236265.875 0.3266968047480823 6 -0.17390060424804688 1 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 187.92953380467262 5.336922440765807E-13 1 YPVE{I|L}HEY{I|L} 9 0 + 119.09 0 0 10.253 10.253 95.837 0 0 0 32.55645919874121 11.39506772603255 11.39506772603255 13.153929525707397 0 3.274227503252014 1.6989700043360187 2.0768323252109075 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};[VP]YE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;[VP]YE{I|L}HYE{I|L};YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};YPYH{I|L}E{I|L}D{I|L};[VP]YE{I|L}HE{I|L}Y;[VP]EY{I|L}HEY{I|L} 10.253;9.1204;8.6032;8.366;8.2269;8.0814;8.0128;8.0095;7.8488;7.7619 +;+;-;-;-;-;-;-;-;- + 9601 + NaN NaN 382821.5 NaN 10489 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13464 60.352 NaN 669170 35 0 199350 0.261 + 32003 VYPLMKEYF 9 62 603.2993101230447 1204.5840673128894 2 603.2993774414062 MULTI HCD FTMS 0 0 0 13462 355599.75 0.08474128035204355 62 -1.4052543640136719 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 51.629811660486645 0.02929079705179888 1 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 65.507 0 0 5.4381 5.4381 85.066 0 0 0 14.967736295259911 44.89913795073509 14.967736295259911 6.5321251377534395 0 1.6989700043360187 1.6989700043360187 0.7302046884880937 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV][{I|L}P]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}[{I|L}P]P{M(Oxidation (M))|F} 5.4381;4.8958;4.483;3.6941;3.6316 -;+;-;-;- + 119 NaN NaN 189594.9 NaN 10490 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13465 60.356 NaN 643140 35 0 82658 0.261 + 14776 LIEELFGMI 9 85 532.7904872455442 1063.5664215578884 2 533.3087158203125 MULTI HCD FTMS 0 0 0 13462 9311.9638671875 0.24684046209041177 4 -0.12482833862304688 3 Unmodified _LIEELFGMI_ REV__ENSG00000068097|ENST00000184956|HEATR6 18.13498045792455 0.20367413111508956 1 [DV]QG 4 -1 25.489 0 0 2.3966 0 0 0 661.3688867280633 661.3688867280633 9.30932616747554 0 0 0 0 0 1.6989700043360187 0.4247425010840047 0 [DV]QG 2.3966 - 303 NaN NaN 198215.9 NaN 10491 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13466 60.359 NaN 415480 35 0 62114 0.261 + 5710 FPAGYMYPSM 10 70 598.243611247786 1194.472669562372 2 598.2437133789062 MULTI HCD FTMS 0 0 0 13462 121950.3046875 0.3382796627197915 -48 1.2365074157714844 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 64.23631603340823 0.02601519761747251 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 52.607 0 0 4.4042 0 0 535.2428456037125 0 535.2428456037125 0 39.815534464597704 0 0 0 1.774227503252014 0 0.3807196863200844 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.4042 + + 173 NaN NaN 159644.9 NaN 10492 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13467 60.363 NaN 154540 35 0 11557 0.261 + 4679 EYPDRIMNTF 10 54 643.2977950714372 1284.5810372096744 2 643.296875 MULTI HCD FTMS 0 0 0 13462 44061.33203125 0.014153778606950192 58 -1.3348808288574219 5 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 16.149105407346934 0.3600587335443843 1 TNM 3 9 11.682 0 0 0.90944 0 0 183.09288252006655 752.3379000299436 935.4307825500102 0 0 0 0 0 0 0 0 0 TNM 0.90944 - 16 + NaN NaN 107367.7 NaN 10493 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13468 60.366 NaN 210800 35 0 20272 0.263 + 2241 DLDLEPAEL 9 80 507.7527256677119 1013.4908984022238 2 507.7530212402344 MULTI HCD FTMS 0 0 0 13462 37424.703125 0.687378834421302 5 -0.147735595703125 6 Unmodified _DLDLEPAEL_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 20.453626601364224 0.18364154288633264 1 N{I|L} 2 -1 16.744 0 0 1.6521 0 0 768.3701039044937 0 768.3701039044937 0 1.2590598649689966 0 0 0 0 0 0 0 N{I|L} 1.6521 - 191 NaN NaN 121357.6 NaN 10494 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13469 60.369 NaN 133630 35 0 8494.2 0.261 -1 VWMRSPLSTF 10 56 620.3128350582227 1238.6111171832454 2 620.3116455078125 MULTI HCD FTMS 0 0 0 13462 67919.5 0.6658012122539584 8 -0.22291946411132812 7 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ ENST00000558985.5_1_15:60656692-60690187:-|nuORF;ENST00000559725.5_1_15:60656692-60682421:-|nuORF 13.614867670302875 0.3837631382804675 1 S[{M(Oxidation (M))|F}T] 3 -1 14.705 0 0 1.1872 0 0 885.4532219331289 0 885.4532219331289 0 2.119674769191846 0 0 0 0.4247425010840047 0 0 0 S[{M(Oxidation (M))|F}T] 1.1872 + + 167 NaN NaN 101767.3 NaN 10495 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13470 60.373 NaN 110130 35 0 7353 0.261 + -1 VAAFITCEGQR 11 47 626.3106020983643 1250.6066512635284 2 626.31103515625 MULTI HCD FTMS 0 0 0 13462 41484.6875 0.49472308666122944 -8 0.212921142578125 8 Carbamidomethyl (C) _VAAFITC(Carbamidomethyl (C))EGQR_ REV__ENSG00000180182|ENST00000324817|MED14 3.2813086475875832 0.40452996145431686 1 K 1 -1 6.9897 0 0 0.5589 0 0 391.21384228090966 728.2764986627561 1119.4903409436658 0 0 0 0 0 0 0 0 0 K 0.5589 - 10 + NaN NaN 95958.2 NaN 10496 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13471 60.376 NaN 44478 35 0 3570.5 0.261 -1 0 36 623.5397772946433 NaN 0 623.2420654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92638.6 NaN 10497 2972 13462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13473 60.381 NaN 2225700 35 0 300410 0.327 + -1 VLWTLCFYLFF 11 118 503.592996758803 1507.757160876609 3 503.5932312011719 MULTI HCD FTMS 0 0 0 13472 521466.9375 0.05747867422515984 26 -0.7194480895996094 1 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 18.721224879955976 0.29396376558286563 1 {M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 67.682 0 0 4.4889 0 0 564.26618657719 0 564.26618657719 0 55.463432323661976 0 0 0 2.798455006504028 0 1.274227503252014 0 {M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4889 - 990 NaN NaN 417490.1 NaN 10498 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13474 60.385 NaN 742580 35 0 53856 0.261 + 13173 KYLSVQGQLF 10 88 591.8294574746005 1181.644362016001 2 591.8296508789062 MULTI HCD FTMS 0 0 0 13472 401507.875 0.0537704535478931 20 -0.5502166748046875 2 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 75.5705956163825 0.010984675281887875 1 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 84.24 0 0 7.129 7.129 88.538 0 0 0 7.741822736656587 16.53212513775344 7.741822736656587 7.741822736656587 0 2.25 1.3979400086720375 0.6694451763165201 0.8882104921644451 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KA]GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F} 7.129;6.4739;6.3535;6.3271;6.0697;6.0474;5.6983;5.6719;5.5515;5.2941 -;+;-;-;-;-;-;-;-;- + 2146 NaN NaN 195947 NaN 10499 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13475 60.389 NaN 802290 35 0 95437 0.261 + 4570 EYLLKVNEI 9 94 560.8163489898692 1119.6181450465383 2 560.8164672851562 MULTI HCD FTMS 0 0 0 13472 279002.09375 0.6817494194139366 1 -0.0328216552734375 3 Unmodified _EYLLKVNEI_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 160.6895995991744 8.89223804155775E-09 1 [YE]{I|L}{I|L}KVNE{I|L} 9 0 + 82.928 0 0 7.4068 7.4068 92.141 0 0 0 38.24319478433574 19.49401151747452 19.49401151747452 12.26280941356464 0 1.8023583437134807 1.5228787452803376 1.3494850021680094 1.110924374808178 + + [YE]{I|L}{I|L}KVNE{I|L};[YE]{I|L}{I|L}KVGGE{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}[SG]{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}VK{I|L}{I|L}YE{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}[SG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}[YQ]{I|L};[YV]P{I|L}[VG]{[MG]|[TS]}TA{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}[YG]A{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}[YQ]{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}[YG]A{I|L} 7.4068;6.3116;1.5249;1.4645;1.4133;1.0819;1.0669;1.0362;0.96548;0.92461 +;-;-;-;-;-;-;-;-;- + 1809 + NaN NaN 206850.5 NaN 10500 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13476 60.392 NaN 565250 35 0 132340 0.263 + 24760 RYNPRILFQL 10 56 440.59070454753385 1318.7502842428016 3 440.5908508300781 MULTI HCD FTMS 0 0 0 13472 163868.625 0.6610987146777819 5 -0.14107513427734375 4 Unmodified _RYNPRILFQL_ ENSG00000164961|ENST00000318410|WASHC5 20.580933911654288 0.31860490502175054 1 {M(Oxidation (M))|F}Q{I|L} 3 7 40.406 0 0 3.064 0 0 912.5289924547626 0 912.5289924547626 0 23.416375079047498 0 0 0 1.5 0 0 0.8494850021680094 + {M(Oxidation (M))|F}Q{I|L} 3.064 + + 54 + NaN NaN 171814.3 NaN 10501 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13477 60.395 NaN 507770 35 0 69504 0.261 + 7142 FSEFLEVL 8 59 492.2559512753726 NaN 0 492.2555847167969 PEAK HCD FTMS 0 0 0 13472 185227.59375 0.8323025533000302 1 -0.0328216552734375 5 Unmodified _FSEFLEVL_ REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;REV__ENSG00000070371|ENST00000427926|CLTCL1;REV__nc|ENSG00000070371|P53675-2|CLTCL1 26.34127834903884 0.38080804198364926 1 V 1 -1 11.99 0 0 1.2203 0 0 131.09466363546215 749.3116818740485 880.4063455095106 0 0 0 0 0 0.5 0 0 0 V 1.2203 + + 80 + NaN NaN 168904.4 NaN 10502 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13478 60.399 NaN 144850 35 0 20321 0.261 + 16273 LQLEMDAL 8 48 466.74110400222924 931.4676550712585 2 466.7414855957031 MULTI HCD FTMS 0 0 0 13472 43083.34765625 0.38352631465110604 -14 0.3738136291503906 6 Unmodified _LQLEMDAL_ REV__ENSG00000006071|ENST00000389817|ABCC8;REV__nc|ENSG00000006071|Q09428-2|ABCC8 7.289230182591677 0.5311777711368266 1 A{I|L} 2 -1 25.969 0 0 2.788 0 0 729.3377782083676 0 729.3377782083676 0 11.365006360318688 0 0 0 0.5 0 0 0 A{I|L} 2.788 + + 51 NaN NaN 105112 NaN 10503 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13479 60.402 NaN 330400 35 0 26980 0.261 + -1 PLSCVGCYL 9 70 506.23361253880626 NaN 0 506.23358154296875 PEAK HCD FTMS 0 0 0 13472 7954.2353515625 0.13921986023620864 1 -0.0328216552734375 7 Carbamidomethyl (C) _PLSC(Carbamidomethyl (C))VGCYL_ REV__ENSG00000139726|ENST00000280557|DENR;REV__ENST00000539463.1_1_12:123238248-123247514:+|nuORF 12.531546534597751 0.23452071659215576 1 PDMVVY 6 -1 22.902 0 0 2.2665 0 0 114.01076495584364 189.09881006412346 303.1095750199671 0 0 0 0 0 0 0 0.3494850021680094 0 PDMVVY 2.2665 - 55 + NaN NaN 138090.6 NaN 10504 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13480 60.405 NaN 147870 35 0 14976 0.261 -1 PLACAPAML 9 57 472.2402205445312 942.4658881558624 2 472.23919677734375 MULTI HCD FTMS 0 0 0 13472 18091.939453125 0.038093814682483254 18 -0.4944648742675781 8 Carbamidomethyl (C) _PLAC(Carbamidomethyl (C))APAML_ ENST00000600584.5_1_19:4094554-4095145:-|nuORF 20.871210003555333 0.18003371494288972 1 P{I|L}{M(Oxidation (M))|F} 3 -1 37.932 0 0 4.0247 0 0 0 582.2572725885374 582.2572725885374 14.631068929195408 0 0 0 0 0 2 0 0 P{I|L}{M(Oxidation (M))|F} 4.0247 - 120 + NaN NaN 103475.3 NaN 10505 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13481 60.409 NaN 194370 35 0 17841 0.261 -1 GIFFVMLM 8 59 487.24954777648986 NaN 0 487.2637023925781 PEAK HCD FTMS 0 0 0 13472 18945.849609375 1 0 0 9 Oxidation (M) _GIFFVMLM(Oxidation (M))_ ENSG00000183813|ENST00000330953|CCR4 6.354104778181461 0.38822285293237185 1 T{I|L} 2 -1 7.9588 0 0 0.8184 0 0 64.93377557627578 690.3963423403177 755.3301179165935 0 0 0 0 0 0 0 0 0 T{I|L} 0.8184 - 8 + NaN NaN 111319.5 NaN 10506 2973 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13483 60.414 NaN 1244400 35 0 135830 0.327 + 27056 SYMGHFDLL 9 97 549.7497688734081 1097.4849848136162 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13482 798528.375 0.07709115480666785 -12 0.3343238830566406 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 103.74828524460852 0.00396301343438984 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 59.319 0 0 5.405 5.405 90.701 0 0 0 5.6424927368725974 15.334778045573074 5.6424927368725974 27.803943707888763 0 1.8851518780601921 0 0.7614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];SY{I|L}C(Carbamidomethyl (C))[Q{I|L}][WE];SYD[KS][WP]C{I|L};SY{[WS]|[C(Carbamidomethyl (C)){I|L}]}[NP]{I|L}[MT];SYD{[{M(Oxidation (M))|F}H]|[RQ]}[{I|L}T]C{I|L};SYD{[{M(Oxidation (M))|F}H]|[RQ]}VV[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP][MT]{M(Oxidation (M))|F} 5.405;2.8716;2.5238;2.4059;2.4008;2.3826;2.3542;2.1612;2.1327;1.2047 +;-;-;-;-;-;-;-;-;- + 805 NaN NaN 285112.1 NaN 10507 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13484 60.418 NaN 1170500 35 0 161730 0.261 + 3294 EEFGRFASF 9 75 545.2537224149381 1088.4928918966762 2 545.2537841796875 MULTI HCD FTMS 0 0 0 13482 503346.9375 0.8604236781199283 1 -0.029571533203125 2 Unmodified _EEFGRFASF_ ENSG00000204287|ENST00000395388|HLA-DRA 152.88595553498965 5.775426743015152E-06 1 EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}AS{M(Oxidation (M))|F} 9 0 + 85.517 0 0 7.8565 7.8565 95.456 0 0 0 13.173327074556909 50.754340747697526 13.173327074556909 36.18562527100117 0 3.242992819099939 1.2218487496163564 2.8807196863200843 0 + + EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}AS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AS{M(Oxidation (M))|F};EEW[VG][HV]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{[NV]|[RG]}[NG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{[NV]|[RG]}EE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV]R[VS]EE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV][VG]WEE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}EE;[NP][DP]{[NV]|[RG]}WT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}[YK]EE 7.8565;4.5321;4.1916;3.7282;2.6477;1.6266;1.6266;1.3634;0.37084;0.084075 +;-;-;-;-;-;-;-;-;- + 995 NaN NaN 259600.2 NaN 10508 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13485 60.422 NaN 1546600 35 0 171930 0.261 + 34458 YPEVRIVLM 9 101 568.3123346642319 1134.6101163952637 2 568.3128662109375 MULTI HCD FTMS 0 0 0 13482 597637.5 0.8257569287389784 -2 0.06564712524414062 3 Oxidation (M) _YPEVRIVLM(Oxidation (M))_ ENSG00000135829|ENST00000367549|DHX9 96.36657018975838 0.004359138328518304 1 YPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 109.79 0 0 9.6766 9.6766 97.243 0 0 0 71.42667503568731 16.478174818886373 16.478174818886373 26.323260009128248 0 2.841129063296272 1.3010299956639813 0.8807196863200843 0 + + YPEVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}VPY;[EP]YVR{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]R{I|L}V{I|L}{M(Oxidation (M))|F};[EP]VYR{I|L}V{I|L}{M(Oxidation (M))|F};[VP]EYR{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}][QP][KQ]V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}][KQ]V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}][KQ]VPY 9.6766;7.3566;6.5495;5.8355;5.3947;4.6439;4.2234;3.4473;3.3608;2.5537 +;+;-;-;-;-;-;-;-;- + 1641 + NaN NaN 323880.8 NaN 10509 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13486 60.425 NaN 459960 35 0 56926 0.261 + 24720 RYLVEVEEL 9 67 575.3110227958352 1148.6074926584704 2 575.3112182617188 MULTI HCD FTMS 0 0 0 13482 258039.703125 0.6439573905552006 2 -0.05918121337890625 4 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 70.33199760932243 0.0089807860198535 1 VEVEE{I|L} 6 3 70.182 0 0 6.1102 0 0 432.24809462715 0 432.24809462715 0 41.88493471842449 0 0 0 2.1549471895720984 0 0.6861818737241735 0 + VEVEE{I|L} 6.1102 + + 578 NaN NaN 148791.7 NaN 10510 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13487 60.428 NaN 388030 35 0 36750 0.261 + 35661 YYIQYLQQF 9 83 633.3114523470605 1264.6083517609209 2 633.8276977539062 MULTI HCD FTMS 0 0 0 13482 15032.09375 0.42944645472679843 4 -0.10825347900390625 5 Unmodified _YYIQYLQQF_ tr|U7T8B7|U7T8B7_FUSNUTypeIIItoxin-antitoxinsystemToxN/AbiQfamilytoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00157PE=4SV=1 8.593279151180031 0.2858735984551981 1 [DP]{I|L}[YN][{I|L}P]QDP 10 6 31.092 0 0 2.4586 0 0 0 109.02858499443633 109.02858499443633 -2.2091182050932083 0 -2.2091182050932083 0 0 0 0 0.805462187404089 0.6382104921644451 [DP]{I|L}[YN][{I|L}P]QDP 2.4586 - 874 NaN NaN 141733.8 NaN 10511 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13488 60.432 NaN 154760 35 0 24516 0.261 + 11686 IYYVDVQKF 9 49 587.8105708681213 1173.6065888030425 2 587.8109130859375 MULTI HCD FTMS 0 0 0 13482 59729.296875 0.8081965241000676 1 -0.029571533203125 6 Unmodified _IYYVDVQKF_ ENSG00000160410|ENST00000291842|SHKBP1 41.95555342248728 0.056367691549927025 1 [Y{I|L}]YVDVQK{M(Oxidation (M))|F} 9 0 + 79.619 0 0 6.7842 6.7842 89.385 0 0 0 25.642492736872597 79.61934710801621 25.642492736872597 9.208187539523749 0 1.8807196863200843 2 0 0 + + [Y{I|L}]YVDVQK{M(Oxidation (M))|F};[Y{I|L}]YVDV[AG]K{M(Oxidation (M))|F};[Y{I|L}]YVD{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F} 6.7842;5.9996;5.1186 +;-;- + 103 NaN NaN 108617.8 NaN 10512 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13489 60.435 NaN 439860 35 0 32894 0.261 -1 YNAPTDHGLCI 11 64 630.7877839469844 1259.5610149607687 2 630.7877197265625 MULTI HCD FTMS 0 0 0 13482 134153.875 0.7578404466059472 -2 0.06564712524414062 7 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 1 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 67.273 0 0 5.341 0 0 0 265.1303804986938 265.1303804986938 47.80902815397354 0 0 0 0 2.6549471895720984 1.6989700043360187 0.8494850021680094 0 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYY 5.341 - 149 + NaN NaN 154513.5 NaN 10513 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13490 60.438 NaN 167030 35 0 21594 0.264 + -1 MWKCVSRYTL 10 56 434.88217043103924 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 13482 29943.513671875 0.36538265192795016 29 -0.7879562377929688 8 Oxidation (M) _M(Oxidation (M))WKCVSRYTL_ REV__ENST00000597423.1_1_19:59058531-59059226:+|nuORF 1.7422754331352037 0.33869314273211465 1 AP 2 -1 10.969 0 0 1.2641 0 0 130.3398280673535 566.2902926080686 696.6301206754222 0 0 0 0 0 0 0 0 0 AP 1.2641 - 6 + NaN NaN 108941.1 NaN 10514 2974 13482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13492 60.443 NaN 907920 35 0 124430 0.327 + 15267 LPAAGVGDMVM 11 89 538.7592438788679 1075.5039348245357 2 538.7595825195312 MULTI HCD FTMS 0 0 0 13491 420051.65625 1 0 0 1 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 111.28704002717404 0.01943762955880584 1 AGVGDMV{M(Oxidation (M))|F} 8 3 76.579 0 0 7.1203 0 0 281.17341811347814 0 281.17341811347814 0 46.25717054447756 0 0 0 3.2971062485323515 0 0.6237125054200234 0 + AGVGDMV{M(Oxidation (M))|F} 7.1203 + + 1873 NaN NaN 223810.5 NaN 10515 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13493 60.448 NaN 822010 35 0 87153 0.261 + 2111 DFGAAQLDQLM 11 81 604.7839276285792 NaN 0 604.7684326171875 PEAK HCD FTMS 0 0 0 13491 21030.958984375 1 0 0 2 Unmodified _DFGAAQLDQLM_ REV__ENSG00000131023|ENST00000543571|LATS1;REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF;REV__nc|ENSG00000131023|O95835-2|LATS1 9.38312468134398 0.31550292094573573 1 D{M(Oxidation (M))|F}QPQD 6 -1 43.708 0 0 3.6195 0 0 165.110364761242 309.1250094049438 474.2353741661858 0 0 0 0 0 0 0 0.9947026752325154 0.3494850021680094 D{M(Oxidation (M))|F}QPQD 3.6195 - 648 + NaN NaN 207178.7 NaN 10516 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13494 60.451 NaN 565570 35 0 85210 0.261 + 27362 SYSMIVNNL 9 69 528.7549745835934 1055.4953962339866 2 528.75537109375 MULTI HCD FTMS 0 0 0 13491 176859.25 0.38764207559584046 6 -0.16386795043945312 3 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 72.96794272382148 0.008127836904478181 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N 9 2 + 46.18 0 0 4.3752 4.3752 85.254 0 0 0 24.726205852665117 4.893324630099869 4.893324630099869 9.208187539523749 0 1.829689690656103 0 0 0.7302046884880937 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}N;[KC]QV{I|L}{M(Oxidation (M))|F}G{[{M(Oxidation (M))|F}D]|MM};[KC][AG]V{I|L}{M(Oxidation (M))|F}G{[{M(Oxidation (M))|F}D]|MM} 4.3752;3.5028;2.8852;2.0128 -;-;-;- 305 + NaN NaN 174466.6 NaN 10517 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13495 60.455 NaN 462910 35 0 87882 0.261 + 1438 AYSAKIALF 9 75 492.2816094445605 982.548665955921 2 493.7689208984375 MULTI HCD FTMS 0 0 0 13491 11121.48828125 0.20717213661990166 13 -0.3469657897949219 4 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 9.347437153973935 0.2795965555214564 1 {M(Oxidation (M))|F}DTA{I|L}A[H{I|L}] 8 5 34.844 0 0 3.5463 0 0 96.09309506071641 0 96.09309506071641 0 -6.63303128443836 -6.63303128443836 0 0 0 0 0.75 0 {M(Oxidation (M))|F}DTA{I|L}A[H{I|L}] 3.5463 - 400 + NaN NaN 155734.8 NaN 10518 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13496 60.458 NaN 454290 35 0 186040 0.261 + 24048 RWSPVRPLVF 10 50 419.57998639114066 1255.718129773622 3 419.580322265625 MULTI HCD FTMS 0 0 0 13491 130346.5625 0.3633789839930263 6 -0.16386795043945312 5 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 7.477065608646677 0.43572640772348226 1 V{M(Oxidation (M))|F} 2 8 29.464 0 0 2.3464 0 0 991.568258735655 0 991.568258735655 0 28.917731411351753 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.3464 + + 20 NaN NaN 146189.2 NaN 10519 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13497 60.461 NaN 447190 35 0 40308 0.261 -1 YNAPTDHGLCI 11 62 630.7877839469844 1259.5610149607687 2 630.7879638671875 MULTI HCD FTMS 0 0 0 13491 169880.734375 0.9596628618330725 -1 0.029571533203125 6 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 1 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYYH 9 -1 70.116 0 0 5.5667 0 0 0 128.07219239576617 128.07219239576617 54.63160941989898 0 0 0 0 2.274227503252014 1.6989700043360187 0.4247425010840047 0.805462187404089 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYYH 5.5667 - 126 NaN NaN 147787.5 NaN 10520 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13498 60.465 NaN 618290 35 0 111550 0.263 + 15506 LPDMVVSHL 9 74 505.77034559967217 1009.5261382661444 2 505.77032470703125 MULTI HCD FTMS 0 0 0 13491 133857.78125 0.16290115290589682 -5 0.144287109375 7 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 99.79894945604345 0.0042691968066200965 1 {I|L}PDMVVSH{I|L} 9 0 + 99.957 0 0 9.9014 9.9014 96.456 0 0 0 85.97804375441612 7.147642715192504 7.147642715192504 17.527100189976167 0 2.723197507588033 1.5228787452803376 0.6861818737241735 0 + + {I|L}PDMVVSH{I|L};[{I|L}P]DMVVSH{I|L};[{I|L}P][EC]{I|L}VSH{I|L};[DP]{I|L}MVVSH{I|L};[{I|L}P]D{[ES]|[DT]|[{I|L}C]}{I|L}SH{I|L};[DP]M{I|L}VVSH{I|L};[{I|L}P][EC]V{I|L}SH{I|L};[DP]MV{I|L}VSH{I|L};[{I|L}P]D{[ES]|[DT]|[{I|L}C]}[HS]{I|L}{I|L};[DP]MVV{I|L}SH{I|L} 9.9014;8.1653;5.9711;5.8633;5.6763;5.1936;4.9403;4.4575;3.4714;3.4267 +;+;-;-;-;-;-;-;-;- + 440 + NaN NaN 176169.1 NaN 10521 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13499 60.468 NaN 545620 35 0 68241 0.261 + 13690 KYPHYFPLL 9 99 589.3237730376378 1176.6329931420755 2 589.323974609375 MULTI HCD FTMS 0 0 0 13491 112174.015625 0.215987739808305 -5 0.144287109375 8 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 101.72198241140316 0.004218805956062179 1 KYPHY{M(Oxidation (M))|F}P{I|L}{I|L} 9 0 + 65.824 0 0 5.5943 5.5943 83.285 0 0 0 1.8569824877987315 1.8569824877987315 1.8569824877987315 1.8569824877987315 0 2.774227503252014 0 0 0 + + KYPHY{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YKY{M(Oxidation (M))|F}P{I|L}{I|L};{[WN]|[YH]}PKY{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YKY{M(Oxidation (M))|F}{I|L}P{I|L};{[WN]|[YH]}PKY{M(Oxidation (M))|F}{I|L}P{I|L};[{M(Oxidation (M))|F}V]WQQ{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{M(Oxidation (M))|F}YKP{I|L}{I|L};{[WN]|[YH]}P{M(Oxidation (M))|F}YKP{I|L}{I|L};[YK]{[QC]|[C(Carbamidomethyl (C))A]}{[QG]|[NA]}KP{I|L}{I|L};[{M(Oxidation (M))|F}V]WQQ{M(Oxidation (M))|F}{I|L}P{I|L} 5.5943;5.4365;5.224;4.6484;4.4359;3.7459;3.488;3.2755;3.0392;2.9578 +;-;-;-;-;-;-;-;-;- + 1021 + NaN NaN 179798.4 NaN 10522 2975 13491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13501 60.473 NaN 750190 35 0 391780 0.327 -1 0 64 427.3025079880766 852.5904630429533 2 427.30267333984375 MULTI HCD FTMS 0 0 0 13500 460705.84375 0.45889124436626194 8 -0.20940399169921875 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.3598 0 0 687.5121071853346 0 687.5121071853346 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3598 - 25 + NaN NaN 194569.5 NaN 10523 2976 13500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13502 60.477 NaN 552430 35 0 74280 0.261 + 3668 ELLQQFASF 9 87 541.7798303363046 1081.545107739409 2 541.7691040039062 MULTI HCD FTMS 0 0 0 13500 21213.189453125 0.7839850870971992 -2 0.05918121337890625 2 Unmodified _ELLQQFASF_ ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1 20.453626601364224 0.18364154288633264 1 {I|L}YT{M(Oxidation (M))|F} 4 7 48.219 0 0 4.4584 0 0 0 554.2365575503557 554.2365575503557 -2.3126680729140503 0 -2.3126680729140503 0 0 0 1.6989700043360187 0.7742275032520141 0 {I|L}YT{M(Oxidation (M))|F} 4.4584 - 1351 + NaN NaN 173725.4 NaN 10524 2976 13500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13503 60.481 NaN 246970 35 0 30611 0.261 + 5928 FPDPAGKLNQF 11 65 617.3169633395062 1232.6193737458123 2 617.3167114257812 MULTI HCD FTMS 0 0 0 13500 66176.4921875 0.1706366773720449 10 -0.2583656311035156 3 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 19.625955294349634 0.28608081981942357 1 DPE 3 9 25.674 0 0 2.0829 0 0 873.4722223013202 0 873.4722223013202 0 8.199849938126889 0 0 0 0.4247425010840047 0 0 0 DPE 2.0829 - 55 NaN NaN 143658.7 NaN 10525 2976 13500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13504 60.484 NaN 440960 35 0 24859 0.261 + 35362 YYAYLPAKL 9 86 551.3025439746849 1100.5905350161697 2 551.8165893554688 MULTI HCD FTMS 0 0 0 13500 46239.796875 0.765294758449031 -4 0.12482833862304688 4 Unmodified _YYAYLPAKL_ ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-3|TMEM63B 23.1484247019978 0.1603590852062899 1 YYA 3 6 35.814 0 0 3.2541 0 0 0 700.4062690025369 700.4062690025369 -1.0315417774196334 0 -1.0315417774196334 0 0 0.7742275032520141 2 0 0 + YYA 3.2541 + + 836 + NaN NaN 147081.6 NaN 10526 2976 13500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13505 60.487 NaN 373560 35 0 41961 0.261 + 35746 YYLQGGFSRF 10 62 619.3038141966312 1236.5930754600622 2 619.3038940429688 MULTI HCD FTMS 0 0 0 13500 144936.046875 0.5766156511691471 -3 0.09200286865234375 5 Unmodified _YYLQGGFSRF_ ENSG00000130829|ENST00000342782|DUSP9 75.5705956163825 0.010984675281887875 1 YY{I|L}QN{M(Oxidation (M))|F}SR{M(Oxidation (M))|F} 9 2 + 94.505 0 0 7.6423 7.6423 90.891 0 0 0 7.113518072006087 7.113518072006087 7.113518072006087 9.208187539523749 0 2.7302046884880937 2 0 0.7059771852360797 YY{I|L}QN{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}NQ{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YYG[{I|L}A]N{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}N[AG]{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}GGQ{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YYG[{I|L}A]GG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YYG{[VA]|[{I|L}G]}Q{M(Oxidation (M))|F}SR{M(Oxidation (M))|F} 7.6423;6.8977;6.8977;6.4293;5.9281;5.8935;5.6847;5.6847;4.924;4.7151 -;-;+;-;-;-;-;-;-;- + 1183 NaN NaN 136273.3 NaN 10527 2976 13500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13506 60.491 NaN 203350 35 0 25449 0.264 + 12650 KWFFQKLRF 9 74 433.91669708106457 1298.7282618433937 3 433.91680908203125 MULTI HCD FTMS 0 0 0 13500 56040.14453125 0.07556710473741923 78 -1.7707901000976562 6 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 23.789781309258295 0.1548179064208189 1 KW 2 7 24.464 0 0 1.8837 0 0 0 981.5308419643643 981.5308419643643 9.859856381998782 0 0 0 0 0.3494850021680094 0 0 0 + KW 1.8837 + + 61 + NaN NaN 116402.1 NaN 10528 2976 13500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13508 60.496 NaN 879950 35 0 77957 0.327 + 34711 YPVEIHEYL 9 90 581.7924129009604 1161.5702728687206 2 581.7926635742188 MULTI HCD FTMS 0 0 0 13507 418637.71875 0.1106296047059063 11 -0.2944488525390625 1 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 128.3654064809346 0.00070410514679239 1 YPVE{I|L}HEY{I|L} 9 0 + 108.68 0 0 9.3565 9.3565 95.426 0 0 0 43.566147098514705 11.39506772603255 11.39506772603255 14.23032644951428 0 3.1549471895720984 1.6989700043360187 1.4559771852360797 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VEH{I|L}EY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VEH{I|L}E{I|L}Y;YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};YPYH{I|L}E{I|L}D{I|L};YPY{I|L}HEVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VEH{I|L}YE{I|L} 9.3565;8.1314;7.8108;7.5297;7.2091;7.1114;6.8276;6.8128;6.7908;6.507 +;+;-;-;-;-;-;-;-;- + 4158 + NaN NaN 222606.1 NaN 10529 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13509 60.5 NaN 748470 35 0 294730 0.261 + 31956 VYPGDPLRF 9 52 532.2820432436615 1062.549533554123 2 532.2822875976562 MULTI HCD FTMS 0 0 0 13507 277928.75 0.5489448773232521 -3 0.08208847045898438 2 Unmodified _VYPGDPLRF_ ENSG00000170892|ENST00000396388|TSEN34 10.073929032068715 0.27331982688540024 1 [YV]P 3 6 34.705 0 0 3.2662 0 0 0 700.3423555963499 700.3423555963499 33.99166239860314 0 0 0 0 0.4247425010840047 2 0 0 + [YV]P 3.2662 + + 14 + NaN NaN 188479.8 NaN 10530 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13510 60.504 NaN 441690 35 0 78817 0.261 + 5711 FPAGYMYPSM 10 72 598.243611247786 1194.472669562372 2 598.243896484375 MULTI HCD FTMS 0 0 0 13507 206301.59375 0.5722628879947254 -43 1.1224098205566406 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 1 {[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F} 10 6 + 58.077 0 0 4.8622 4.8622 84.177 0 0 0 0.8265059764113403 47.8997654084889 0.8265059764113403 6.800150061873111 0 1.774227503252014 0 1.066901560044258 0 {[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PY[W{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F} 4.8622;4.2928;3.8481;0.80512 -;-;-;- 162 NaN NaN 145921.2 NaN 10531 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13511 60.507 NaN 454940 35 0 54954 0.261 + 15289 LPAGDALLQM 10 74 522.7733472075221 NaN 0 522.7737426757812 PEAK HCD FTMS 0 0 0 13507 162791.65625 0.93817533410342 -2 0.052516937255859375 4 Oxidation (M) _LPAGDALLQM(Oxidation (M))_ ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 65.23502041540118 0.03735964729263109 1 {I|L}Q 2 8 33.711 0 0 3.2305 0 0 637.3433586426424 162.0231112115844 799.3664698542268 0 0 0 0 0 1.5 0 0 0.7742275032520141 + {I|L}Q 3.2305 + + 159 + NaN NaN 157965 NaN 10532 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13512 60.51 NaN 190720 35 0 29819 0.261 + 4680 EYPDRIMNTF 10 61 643.2977950714372 1284.5810372096744 2 643.2982788085938 MULTI HCD FTMS 0 0 0 13507 46100.72265625 0.014808890063382502 63 -1.4184303283691406 5 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 34.93206674587334 0.18938571726943593 1 YNT{M(Oxidation (M))|F} 4 6 20.032 0 0 1.5594 0 0 741.33012587715 0 741.33012587715 0 12.073055332855791 0 0 0 0.6822333069283655 0 0.4247425010840047 0 YNT{M(Oxidation (M))|F} 1.5594 - 22 NaN NaN 105114.8 NaN 10533 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13513 60.514 NaN 124350 35 0 9930.6 0.261 + 20361 NYSYLHCEW 9 60 607.7496269843251 1213.4847010354501 2 607.7503051757812 MULTI HCD FTMS 0 0 0 13507 31993.015625 0.2877846350033054 11 -0.2944488525390625 6 Unmodified _NYSYLHCEW_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 14.838274106304384 0.23215694253501695 1 [YN]S 3 6 37.958 0 0 3.128 0 0 0 846.3302706354124 846.3302706354124 30.739087409443187 0 0 0 0 0.4247425010840047 2 0.3252574989159953 0 + [YN]S 3.128 + + 35 + NaN NaN 101571.7 NaN 10534 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13514 60.517 NaN 138850 35 0 6650.3 0.261 -1 APFKFDMEL 9 66 557.2679998904276 1112.5214468476552 2 557.2687377929688 MULTI HCD FTMS 0 0 0 13507 39266.09375 0.42814313235010376 -9 0.24254989624023438 7 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 10.150570793230772 0.27265765907388223 1 V{I|L}V{[NV]|[RG]} 5 -1 22.218 0 0 1.9971 0 0 570.1689821033177 0 570.1689821033177 0 4.515449934959715 0 0 0 0 0 0 0 V{I|L}V{[NV]|[RG]} 1.9971 - 72 + NaN NaN 100202.5 NaN 10535 2977 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13516 60.522 NaN 538250 35 0 35362 0.326 + 13174 KYLSVQGQLF 10 84 591.8294574746005 1181.644362016001 2 591.8297119140625 MULTI HCD FTMS 0 0 0 13515 363766.375 0.04871606308898166 25 -0.6797027587890625 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 84.5221896805406 0.0014228510802933125 1 [YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 0 + 81.027 0 0 6.8572 6.8572 86.891 0 0 0 4.259687322722812 56.5851424828483 4.259687322722812 4.776296993281406 0 2.7302046884880937 0 0.9436726795685342 0.9674165578762486 + + [YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KA]GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YD[KA]GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KA]G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YD[KA]G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KQ]Q{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G{[VA]|[{I|L}G]}A{M(Oxidation (M))|F} 6.8572;6.4529;6.2656;6.0816;5.8614;5.6774;5.4901;5.0859;4.9675;4.9235 +;-;-;-;-;-;-;-;-;- + 1527 NaN NaN 164876.5 NaN 10536 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13517 60.526 NaN 733580 35 0 74198 0.261 + 643 APIRPDIVNF 10 114 571.3217938869849 1140.6290348407697 2 571.322021484375 MULTI HCD FTMS 0 0 0 13515 199481.265625 0.3295605075501948 -6 0.17390060424804688 2 Unmodified _APIRPDIVNF_ ENSG00000174444|ENST00000307961|RPL4;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF 47.7319792270244 0.08603782309361356 1 A[DP]{I|L}VN{M(Oxidation (M))|F} 7 3 56.771 0 0 4.9771 0 0 366.23726088691564 0 366.23726088691564 0 38.044248882649555 0 0 0 2.305462187404089 0 0 0.3494850021680094 A[DP]{I|L}VN{M(Oxidation (M))|F} 4.9771 - 1643 NaN NaN 202932.4 NaN 10537 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13518 60.53 NaN 753550 35 0 83258 0.261 + 32064 VYQKAAMRS 9 86 527.2794805686392 1052.5444082040783 2 528.2792358398438 MULTI HCD FTMS 0 0 0 13515 108198.8671875 0.8602702733928494 1 -0.026142120361328125 3 Unmodified _VYQKAAMRS_ ENSG00000112218|ENST00000229955|GPR63 19.256988751693697 0.19398022840297344 1 [YV]PV{I|L} 5 7 36.075 0 0 3.4274 0 0 0 478.19037923362833 478.19037923362833 12.111475734781635 0 0 0 0 0.28872548999643577 2 0 0 [YV]PV{I|L} 3.4274 - 1028 NaN NaN 209235.5 NaN 10538 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13519 60.533 NaN 314140 35 0 20157 0.261 + 20346 NYSNIRFQF 9 74 594.7927727369674 1187.5709925407348 2 595.7960815429688 MULTI HCD FTMS 0 0 0 13515 88242.421875 0.5816149604873627 -2 0.049072265625 4 Unmodified _NYSNIRFQF_ ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 21.536976647645854 0.1742816388551942 1 YDYSN{I|L} 6 6 38.977 0 0 3.2821 0 0 0 429.22687708072505 429.22687708072505 8.034889402298347 0 0 0 0 0 0 0.3807196863200844 0.3054621874040891 YDYSN{I|L} 3.2821 - 446 + NaN NaN 139083.1 NaN 10539 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13520 60.536 NaN 270050 35 0 118120 0.261 -1 0 61 516.3014341890207 515.2941577224207 1 516.3016357421875 MULTI HCD FTMS 0 0 0 13515 96871.421875 0.45836485016128015 -8 0.22296905517578125 5 NaN NaN 1 N{I|L}{M(Oxidation (M))|F} 3 -1 19.922 0 0 3.866 0 0 123.09080186480192 0 123.09080186480192 0 15.942124970647033 0 0 0 0 0 0 0 N{I|L}{M(Oxidation (M))|F} 3.866 - 27 + NaN NaN 140017.4 NaN 10540 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13521 60.54 NaN 69136 35 0 12496 0.261 -1 MPDSAAALL 9 37 452.7256787786697 903.4368046241394 2 452.7262268066406 MULTI HCD FTMS 0 0 0 13515 40384.06640625 1 0 0 6 Oxidation (M) _M(Oxidation (M))PDSAAALL_ ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-2|GSDME;nc|ENSG00000105928|O60443-3|GSDME 7.289230182591677 0.29575926068275815 1 {I|L}{I|L} 2 -1 24.776 0 0 2.7424 0 0 659.2576771466812 0 659.2576771466812 0 9.291746928241125 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 2.7424 + + 4 NaN NaN 90133.2 NaN 10541 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13522 60.543 NaN 77964 35 0 4917.5 0.261 + 1490 AYTPFHAVL 9 52 509.7714538574219 NaN 0 509.7714538574219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 11.640296217721598 0.23883959125015683 1 CT 2 8 17.206 0 0 1.691 0 0 131.1028859839111 679.3590181940061 810.4619041779172 0 0 0 0 0 0.4247425010840047 0 0.5 0 CT 1.691 - 6 + NaN NaN 105539.5 NaN 10542 2978 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13524 60.548 NaN 2263800 35 0 261810 0.327 + 27057 SYMGHFDLL 9 104 549.7497688734081 1097.4849848136162 2 549.75 MULTI HCD FTMS 0 0 0 13523 1577027 0.15224860680911306 -7 0.200042724609375 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 136.33342141710068 0.00022087650154924235 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 89.466 0 0 8.1519 8.1519 95.325 0 0 0 41.35151878060192 9.889917747712644 9.889917747712644 26.19402840463316 0 2.5356668758921828 2 1.329689690656103 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}G{I|L}{I|L}[HD]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}YS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L} 8.1519;5.7652;4.4456;3.1867;3.1299;2.9755;2.9281;2.726;2.7234;2.6365 +;+;-;-;-;-;-;-;-;- + 1492 + NaN NaN 434639.5 NaN 10543 2979 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13525 60.552 NaN 780270 35 0 56093 0.261 + 4571 EYLLKVNEI 9 95 560.8163489898692 1119.6181450465383 2 560.8159790039062 MULTI HCD FTMS 0 0 0 13523 169384.109375 0.4138948087171944 7 -0.1831512451171875 2 Unmodified _EYLLKVNEI_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 121.5340881639634 0.001118397630175091 1 [YE]{I|L}{I|L}KVNE{I|L} 9 0 + 69.461 0 0 6.204 6.204 89.37 0 0 0 34.17784959512299 15.558933348155215 15.558933348155215 10.334529848931282 0 1.3486198691406326 1.3979400086720375 0.805462187404089 1.0629529932484498 + + [YE]{I|L}{I|L}KVNE{I|L};[YE]{I|L}{I|L}KAAAE{I|L};[YE]{I|L}{I|L}KVGGE{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}YQ{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}YQ{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}[SG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}[SG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}Y[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}Y[AG]{I|L};[YK][RH]{I|L}[SG]{M(Oxidation (M))|F}{I|L} 6.204;5.2809;5.1236;1.3788;1.2026;1.1672;0.99586;0.55156;0.38017;0.31495 +;-;-;-;-;-;-;-;-;- + 1334 + NaN NaN 212299.6 NaN 10544 2979 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13526 60.556 NaN 200880 35 0 25545 0.261 + 20553 PEDSTIKAI 9 62 487.2638156148849 972.5130782965698 2 487.2641906738281 MULTI HCD FTMS 0 0 0 13523 66086.953125 0.777993326779491 3 -0.08189010620117188 3 Unmodified _PEDSTIKAI_ REV__ATXN10-TUBGCP6|1|fusion;REV__ATXN10-TUBGCP6|2|fusion;REV__ENSG00000130638|ENST00000252934|ATXN10;REV__ENST00000483549.5_1_22:46114317-46136469:+|nuORF;REV__nc|ENSG00000130638|Q9UBB4-2|ATXN10 14.838274106304384 0.23215694253501695 1 A{I|L} 2 -1 24.464 0 0 2.5155 0 0 770.381969204766 0 770.381969204766 0 8.010299956639813 0 0 0 0.5 0 0 0 A{I|L} 2.5155 + + 40 NaN NaN 116569.9 NaN 10545 2979 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13527 60.559 NaN 121730 35 0 8797.3 0.261 + 22076 QHKRMPLL 8 44 511.8020659828229 NaN 0 511.7847900390625 PEAK HCD FTMS 0 0 0 13523 7160.78564453125 0.5169857767377554 1 -0.022876739501953125 4 Unmodified _QHKRMPLL_ ENSG00000186577|ENST00000476320|SMIM29;ENST00000463083.1_2_6:34214582-34214708:-|nuORF;nc|ENSG00000186577|Q86T20-2|SMIM29 2.8892196856762586 0.38822285293237185 1 {I|L}P 2 7 10.969 0 0 1.0737 0 0 131.12767541744876 677.3028048150999 808.4304802325487 0 0 0 0 0 0 0 0 0 {I|L}P 1.0737 - 11 + NaN NaN 119496.3 NaN 10546 2979 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13528 60.563 NaN 144640 35 0 9723.6 0.261 -1 RLCKMWWY 8 60 621.7988751209033 1241.5831973086065 2 621.7982177734375 MULTI HCD FTMS 0 0 0 13523 18170.595703125 0.4803449991449835 -1 0.026142120361328125 5 Carbamidomethyl (C) _RLC(Carbamidomethyl (C))KMWWY_ ENST00000513887.5_3_3:140661433-140675458:+|nuORF 5.230669730166228 0.5342319408533849 1 YSQW 4 -1 21.692 0 0 1.7471 0 0 659.3307972638687 0 659.3307972638687 0 10.890128794164404 0 0 0 0 0 0 0 YSQW 1.7471 - 106 NaN NaN 103471.6 NaN 10547 2979 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13529 60.566 NaN 199630 35 0 9728.2 0.261 + 667 APPQPHHMAQ 10 67 557.2679998904276 1112.5214468476552 2 557.3342895507812 MULTI HCD FTMS 0 0 0 13523 30062.318359375 0.3277885299728559 -7 0.200042724609375 6 Unmodified _APPQPHHMAQ_ ENSG00000177992|ENST00000325643|SPATA31E1 5.731851221503515 0.44496410492002586 1 V{I|L}V{[NV]|[RG]} 5 10 22.218 0 0 1.9971 0 0 570.1667601724158 0 570.1667601724158 0 0.4474060134371882 0 0 0 0 0 0 0 V{I|L}V{[NV]|[RG]} 1.9971 - 96 + NaN NaN 109897.6 NaN 10548 2979 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13531 60.571 NaN 5075100 35 0 915000 0.327 + 24341 RYIDRIHIFF 10 89 460.59069929921907 1378.7502684978572 3 460.5909729003906 MULTI HCD FTMS 0 0 0 13530 2422777.75 0.35096858760283484 -6 0.1572723388671875 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 39.922945255915025 0.1460754433722493 1 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 71.943 0 0 5.218 0 0 547.2752592300221 0 547.2752592300221 0 54.787150662581396 0 0 0 2.7302046884880937 0 0 0.3494850021680094 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.218 + + 447 NaN NaN 865268.6 NaN 10549 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13532 60.575 NaN 2583300 35 0 1145500 0.261 + 30438 VLPNRPFGLF 10 90 580.3346179869756 1158.654683040751 2 580.3348999023438 MULTI HCD FTMS 0 0 0 13530 1130127.125 0.6068829974607086 -4 0.09809112548828125 2 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 37.97399986684836 0.1629881689457739 1 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F} 7 5 60.283 0 0 5.2028 0 0 0 387.16726085506957 387.16726085506957 31.86645088746296 0 0 0 0 1.6861818737241734 1.5228787452803376 0 0.4247425010840047 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F} 5.2028 - 470 + NaN NaN 475921.5 NaN 10550 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13533 60.579 NaN 1343300 35 0 126510 0.261 + 34459 YPEVRIVLM 9 99 568.3123346642319 1134.6101163952637 2 568.312744140625 MULTI HCD FTMS 0 0 0 13530 549098.875 0.7586910135224584 4 -0.1113128662109375 3 Oxidation (M) _YPEVRIVLM(Oxidation (M))_ ENSG00000135829|ENST00000367549|DHX9 86.33184430468982 0.004622086694044132 1 YPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 102.05 0 0 8.9941 8.9941 96.654 0 0 0 59.80035185289212 16.478174818886373 16.478174818886373 26.61098568991308 0 2.7376954943324545 1.3010299956639813 0.8252574989159953 0 + + YPEVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}V{I|L}{M(Oxidation (M))|F};[EP]YVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}VPY;[Y{I|L}][DP]R{I|L}V{I|L}{M(Oxidation (M))|F};[EP]VYR{I|L}V{I|L}{M(Oxidation (M))|F};[EP][H{I|L}][PA]{I|L}V{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[KQ][PS]{I|L}V{I|L}{M(Oxidation (M))|F};[YQ][KG][PA]{I|L}V{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[KG][PA]{I|L}V{I|L}{M(Oxidation (M))|F} 8.9941;6.6487;5.9781;5.6461;4.9461;4.7926;2.2957;2.0009;1.8644;1.6991 +;+;-;-;-;-;-;-;-;- + 1139 + NaN NaN 282289.5 NaN 10551 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13534 60.582 NaN 462950 35 0 45417 0.261 + 10472 IPDPLQHGNYL 11 79 633.8274138233809 1265.6402747135617 2 633.8277587890625 MULTI HCD FTMS 0 0 0 13530 284078.84375 0.9644279186774115 4 -0.1113128662109375 4 Unmodified _IPDPLQHGNYL_ ENSG00000134757|ENST00000257189|DSG3 88.36371040165146 0.007145524729115633 1 [DP]{I|L}QP{I|L}HGNY{I|L} 11 4 + 72.243 0 0 5.708 5.708 83.84 0 0 0 2.742275032520155 15.070623213458035 2.742275032520155 2.742275032520155 0 1.6989700043360187 0 0 0.9291746928241126 [DP]{I|L}QP{I|L}HGNY{I|L};[{I|L}P]DQP{I|L}HGNY{I|L};[DP]{I|L}[{I|L}P]QHGNY{I|L};[{I|L}P]D[{I|L}P]QHGNY{I|L};[DP]{I|L}QP{I|L}HGGGY{I|L};[{I|L}P]DQP{I|L}HGGGY{I|L};[DP]{I|L}[{I|L}P]QHGGGY{I|L};[DP]{I|L}QPH{I|L}GNY{I|L};[{I|L}P]QDP{I|L}HGNY{I|L};[DP]{I|L}[{I|L}P][AG]HGNY{I|L} 5.708;5.4913;5.3522;5.1355;4.9867;4.7701;4.6309;4.6206;4.4814;4.4143 -;-;-;+;-;-;-;-;-;- + 1066 NaN NaN 160322.9 NaN 10552 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13535 60.586 NaN 589700 35 0 67517 0.261 + 20347 NYSNIRFQF 9 74 594.7927727369674 1187.5709925407348 2 594.7933959960938 MULTI HCD FTMS 0 0 0 13530 288621.125 0.5505575185045188 -1 0.022876739501953125 5 Unmodified _NYSNIRFQF_ ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 128.93241758739586 0.0006697181619526092 1 NYSN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 0 + 85.736 0 0 7.2194 7.2194 85.429 0 0 0 0.3653200891955919 0.3653200891955919 0.3653200891955919 0.3653200891955919 0 2.4247425010840047 1.6989700043360187 0.3252574989159953 0.9361818737241734 + + NYSN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[YN]SN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};NYSGG[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[YN]SGG[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[YN]SN[R{I|L}]{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};[MT]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[PA]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VG]M[{I|L}A]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[MT]{[TV]|[{I|L}S]}M[{I|L}A]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 7.2194;7.1887;6.444;6.4133;6.4133;3.275;2.495;1.9481;1.5871;1.5463 +;+;-;-;-;-;-;-;-;- + 786 + NaN NaN 178964.2 NaN 10553 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13536 60.589 NaN 546480 35 0 52441 0.261 + 12726 KYAMMFAEL 9 75 560.264004709818 1118.5134564864359 2 560.2645874023438 MULTI HCD FTMS 0 0 0 13530 227718.296875 0.41343646211610674 -6 0.1572723388671875 6 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 43.77239144664712 0.04802738721622131 1 [YV][KC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 9 3 + 51.912 0 0 4.6411 4.6411 83.579 0 0 0 2.393528729321652 31.136511201577115 2.393528729321652 6.1978875828839435 0 1.6382104921644451 1.5228787452803376 0 0 [YV][KC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[HN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[PA]DD{M(Oxidation (M))|F}AE{I|L};{[CP]|[EA]}[{I|L}P]DD{M(Oxidation (M))|F}AE{I|L};[VP][DV]DD{M(Oxidation (M))|F}AE{I|L};[YE]{I|L}[YG]MCK{I|L};[YE]{I|L}[YG]MC{I|L}K;{[QN]|[E{I|L}]|[KN]}Y[YG]MCK{I|L};{[QN]|[E{I|L}]|[KN]}Y[YG]MC{I|L}K;{[QN]|[E{I|L}]|[KN]}[DV][C(Carbamidomethyl (C))N]KNK 4.6411;4.087;3.3205;2.8939;2.6956;2.3941;2.2583;1.9266;1.7909;1.2237 -;-;-;-;-;-;-;-;-;- 882 NaN NaN 172734.3 NaN 10554 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13537 60.592 NaN 495120 35 0 74277 0.261 + 19622 NVDPDNVVL 9 67 492.75398512443957 983.4934173156792 2 492.75341796875 MULTI HCD FTMS 0 0 0 13530 205931.859375 0.7349969517425036 -6 0.1572723388671875 7 Unmodified _NVDPDNVVL_ ENSG00000116717|ENST00000370986|GADD45A 45.69961567697781 0.039180348357221985 1 {[NV]|[RG]}DYYVV{I|L} 8 3 + 46.735 0 0 4.752 4.752 90.506 0 0 0 9.634679910804401 27.271256644616635 9.634679910804401 46.73520679637729 0 1.2134679910804405 0 0.3054621874040891 0.6139829889124311 {[NV]|[RG]}DYYVV{I|L} 4.752 - 69 NaN NaN 158219.2 NaN 10555 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13538 60.595 NaN 167800 35 0 16678 0.261 + 18406 MPSQFRDIL 9 56 553.7862926958179 1105.5580324584357 2 553.7870483398438 MULTI HCD FTMS 0 0 0 13530 73972.8671875 0.7463367255817899 1 -0.036167144775390625 8 Unmodified _MPSQFRDIL_ ENSG00000100393|ENST00000263253|EP300 21.590151480376914 0.17382222009858564 1 MPSQ 4 5 36.859 0 0 3.334 0 0 0 659.3535156895362 659.3535156895362 19.156439559682905 0 0 0 0 0.7134679910804405 0 0.3807196863200844 0 + MPSQ 3.334 + + 69 + NaN NaN 104726.3 NaN 10556 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13539 60.599 NaN 245370 35 0 20508 0.261 + 24721 RYLVEVEEL 9 66 575.3110227958352 1148.6074926584704 2 575.3102416992188 MULTI HCD FTMS 0 0 0 13530 100437.0703125 0.25064822556440347 8 -0.21926498413085938 9 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 53.40400417844725 0.026808823219830042 1 [Y{I|L}]RVEVEE{I|L} 9 2 + 80.921 0 0 7.0452 7.0452 95.353 0 0 0 16.222412206649466 70.46388461952553 16.222412206649466 80.92145952513228 0 2.004432191740108 1.3979400086720375 0.3252574989159953 0 [Y{I|L}]RVEVEE{I|L} 7.0452 - 275 NaN NaN 127058.4 NaN 10557 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13540 60.602 NaN 571940 35 0 39902 0.261 + 8010 GFSRYKEDY 9 94 582.7697221623883 1163.5248913915766 2 582.7699584960938 MULTI HCD FTMS 0 0 0 13530 87092.4453125 0.5614539942298507 66 -1.4632644653320312 10 Unmodified _GFSRYKEDY_ ENSG00000164715|ENST00000297293|LMTK2 11.494710602746466 0.2610445893512368 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}TQHEYN 9 7 + 44.792 0 0 3.8496 3.8496 82.867 0 0 0 18.873949984654246 20.376466052557376 18.873949984654246 6.98970004336018 0 0 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}TQHEYN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}TQHYEN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}T[AG]HEYN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}TQA[RD]SN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}T[AG]HYEN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE[VS][RN]SN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[DS]|[MA]|[CV]|TT}{I|L}[RN]SN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE[KG][RD]SN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE[WQ]AASN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[VS][RN]SN 3.8496;3.2489;3.0582;2.5456;2.4575;2.4184;2.311;2.267;2.1596;2.0523 -;-;-;-;-;-;-;-;-;- 1786 NaN NaN 168180.6 NaN 10558 2980 13530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13542 60.607 NaN 2406900 35 0 299100 0.327 + 13294 KYMDVQFDF 9 90 604.7680796891424 1207.5216064450847 2 604.768310546875 MULTI HCD FTMS 0 0 0 13541 1646215.125 0.3109299064621811 -7 0.19343948364257812 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 114.18643581695662 0.002258955990713129 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 90.836 0 0 7.5225 7.5225 86.072 0 0 0 2.65153777800478 11.247293946369794 2.65153777800478 0.5411342943241237 0 1.5 0.7958800173440752 1.5911290632962718 1.416386562212267 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VDYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.5225;7.4777;7.419;7.3029;6.7788;6.7599;6.7151;6.6565;6.5403;6.1642 -;-;-;+;-;-;-;-;-;- + 4162 NaN NaN 453381.6 NaN 10559 2981 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13543 60.611 NaN 927390 35 0 72919 0.261 + 32947 YAISATVFTV 10 93 536.2896824177446 1070.5648119022892 2 537.276123046875 MULTI HCD FTMS 0 0 0 13541 9830.4580078125 0.14204331100915318 11 -0.29109954833984375 2 Unmodified _YAISATVFTV_ ENSG00000070214|ENST00000374720|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;nc|ENSG00000070214|Q8WWI5-3|SLC44A1 21.74664581756881 0.3077012291670537 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}GS{I|L}[{I|L}T] 10 5 + 70.015 0 0 6.54 6.54 89.974 0 0 0 23.979400086720375 7.269987279362624 7.269987279362624 10.268024924119672 0 0 1.6989700043360187 1.0629529932484498 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}GS{I|L}[{I|L}T];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}GST{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ]{I|L}[{I|L}T];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YQ]S{I|L}[{I|L}T];{[TV]|[{I|L}S]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}GS{I|L}[{I|L}T];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}T];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ]T{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YQ]ST{I|L}{I|L};[YV][TA]{M(Oxidation (M))|F}GS{I|L}[{I|L}T];{[TV]|[{I|L}S]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}GST{I|L}{I|L} 6.54;5.5809;4.7408;4.6955;4.3001;4.1899;3.7816;3.7364;3.6702;3.341 -;-;-;-;-;-;-;-;-;- 928 NaN NaN 243342.1 NaN 10560 2981 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13544 60.615 NaN 1801900 35 0 308630 0.261 + -1 IWHELRTRRRC 11 90 528.2880086163295 1581.8421964491886 3 528.6221923828125 MULTI HCD FTMS 0 0 0 13541 394940.3125 0.7047098348086708 -5 0.13425827026367188 3 Carbamidomethyl (C) _IWHELRTRRRC(Carbamidomethyl (C))_ REV__ENST00000521604.6_1_8:54923030-54934756:-|nuORF 0.08335046087909445 0.4185551196980541 1 VYAASRN{I|L}S{I|L}WR{M(Oxidation (M))|F} 13 -1 + 108.63 0 0 6.8676 6.8676 93.405 0 0 0 87.66566992041928 8.266155727117024 8.266155727117024 29.327769784004374 0 3.517220322351953 2 0 0.4247425010840047 VYAASRN{I|L}S{I|L}WR{M(Oxidation (M))|F};VYQTRN{I|L}S{I|L}WR{M(Oxidation (M))|F};VYAASRN{I|L}[R{M(Oxidation (M))|F}]AAP{M(Oxidation (M))|F};VYAASRN{I|L}[R{M(Oxidation (M))|F}]W{[TV]|[{I|L}S]};VYAASRN{I|L}[R{M(Oxidation (M))|F}]V{[WT]|[RM]};[YV]AA[R{M(Oxidation (M))|F}]{I|L}NRSAAP{M(Oxidation (M))|F} 6.8676;5.0136;4.6995;4.5606;4.5106;4.5064 -;-;-;-;-;- 2518 + NaN NaN 362917.9 NaN 10561 2981 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13545 60.618 NaN 386420 35 0 26846 0.261 + 13209 KYLVLANML 9 84 540.8095430025903 1079.6045330719805 2 540.8095703125 MULTI HCD FTMS 0 0 0 13541 179659.5625 0.6299244192289403 12 -0.3239555358886719 4 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 74.92900055777586 0.007493270374442853 1 V{I|L}AN{M(Oxidation (M))|F}{I|L} 6 3 65.126 0 0 6.0324 0 0 404.24269832993724 0 404.24269832993724 0 43.80001899740286 0 0 0 2.274227503252014 0 0 0.2742275032520141 + V{I|L}AN{M(Oxidation (M))|F}{I|L} 6.0324 + + 330 NaN NaN 140776.8 NaN 10562 2981 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13546 60.622 NaN 296610 35 0 112130 0.263 + 24049 RWSPVRPLVF 10 47 419.57998639114066 1255.718129773622 3 419.5800476074219 MULTI HCD FTMS 0 0 0 13541 75649.4140625 0.2108947615837511 12 -0.3239555358886719 5 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 5.40270961882225 0.4467063037482923 1 V{M(Oxidation (M))|F} 2 8 25.969 0 0 2.0681 0 0 991.5701453567992 0 991.5701453567992 0 25.880456295278403 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.0681 + + 4 NaN NaN 127396.8 NaN 10563 2981 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13547 60.625 NaN 275680 35 0 20119 0.261 + -1 YNRFICTSVT 10 56 630.8035423310826 1259.592531728965 2 631.2892456054688 MULTI HCD FTMS 0 0 0 13541 44008.12890625 1 0 0 6 Carbamidomethyl (C) _YNRFIC(Carbamidomethyl (C))TSVT_ REV__ENST00000540449.5_1_2:70169944-70169998:+|nuORF 6.723162845929126 0.4397169348982109 1 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}V[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 11 -1 + 43.332 0 0 3.4402 3.4402 82.833 0 0 0 17.78637538240819 -2.3200675062250653 -2.3200675062250653 7.920982258461073 0 0 1.6989700043360187 0.805462187404089 0.3807196863200844 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}V[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}VY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}V[{M(Oxidation (M))|F}T]A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.4402;2.8113;2.0837;1.9439 -;-;-;- 210 NaN NaN 143226.7 NaN 10564 2981 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13549 60.63 NaN 1231400 35 0 251800 0.327 + 15507 LPDMVVSHL 9 81 505.77034559967217 1009.5261382661444 2 505.7705993652344 MULTI HCD FTMS 0 0 0 13548 599127.625 0.7291214596482175 2 -0.05229949951171875 1 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 136.33342141710068 0.00022087650154924235 1 {I|L}PDMVVSH{I|L} 9 0 + 112.81 0 0 11.175 11.175 95.592 0 0 0 72.29077589097652 9.137342758552691 9.137342758552691 11.237125054200234 0 2.778659694992122 1.5228787452803376 1.5183115237025657 0 + + {I|L}PDMVVSH{I|L};{I|L}PDMVVHS{I|L};[{I|L}P]DMVVSH{I|L};[DP]{I|L}MVVSH{I|L};[DP]M{I|L}VVSH{I|L};[DP]MV{I|L}VSH{I|L};[MD]P{I|L}VVSH{I|L};[{I|L}P][EC]{I|L}VSH{I|L};[{I|L}P]D{[ES]|[DT]|[{I|L}C]}{I|L}SH{I|L};[{I|L}P]DM[TA]{I|L}H{I|L} 11.175;10.062;8.2462;7.6846;6.7951;6.339;6.1027;6.0338;5.8708;5.6964 +;-;+;-;-;-;-;-;-;- + 1179 + NaN NaN 266711.8 NaN 10565 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13550 60.634 NaN 860650 35 0 401780 0.261 -1 0 64 427.3025079880766 852.5904630429533 2 427.30267333984375 MULTI HCD FTMS 0 0 0 13548 427394.15625 0.42571076285904197 14 -0.3884925842285156 2 NaN NaN 1 G{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.7533 0 0 630.4899514236158 0 630.4899514236158 0 9.463950151760656 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.7533 - 36 + NaN NaN 213552.5 NaN 10566 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13551 60.638 NaN 1409600 35 0 112580 0.261 + 17025 LYIVHPTMF 9 107 568.7940859161241 1135.5736188990481 2 568.79443359375 MULTI HCD FTMS 0 0 0 13548 362157.65625 0.8053296647856951 2 -0.05229949951171875 3 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 104.79918948944588 0.003791450360204016 1 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 97.163 0 0 8.5563 8.5563 96.465 0 0 0 54.41311442121902 15.993624753846092 15.993624753846092 33.412311801574944 0 2.1505149978319906 1.6989700043360187 0.6307196863200843 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[DV]M{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[EC]{I|L}{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}HPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[DV]M{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[EC]{I|L}{M(Oxidation (M))|F};{I|L}[KT][WP]PT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HM][{I|L}A]Y{I|L}{M(Oxidation (M))|F} 8.5563;5.614;4.9385;4.8934;4.5005;4.4884;3.8129;3.7679;1.9135;1.3186 +;+;-;-;-;-;-;-;-;- + 1456 + NaN NaN 298632.2 NaN 10567 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13552 60.641 NaN 704330 35 0 112350 0.261 + 13691 KYPHYFPLL 9 95 589.3237730376378 1176.6329931420755 2 589.323974609375 MULTI HCD FTMS 0 0 0 13548 388982.0625 0.7489734234549725 2 -0.05229949951171875 4 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 123.09622228370866 0.0010236603636890153 1 [YK]PHY{M(Oxidation (M))|F}P{I|L}{I|L} 9 0 + 84.096 0 0 7.1471 7.1471 91.766 0 0 0 16.00833760139686 16.00833760139686 16.00833760139686 12.64136888583522 0 2.610924374808178 0 0 1.416386562212267 + + [YK]PHY{M(Oxidation (M))|F}P{I|L}{I|L};[YK]PHY{M(Oxidation (M))|F}{I|L}P{I|L};KYPHY{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}P{I|L}{I|L};{[WN]|[YH]}[KP]Y{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P][KC]E[HQ]P{I|L}{I|L};[{M(Oxidation (M))|F}V]WQQ{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P]{I|L}[C(Carbamidomethyl (C))S][HQ]P{I|L}{I|L};[{M(Oxidation (M))|F}V]AAHY{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}{I|L}P{I|L} 7.1471;6.0728;5.7866;5.3878;5.0609;4.8929;4.3617;4.3607;4.3303;4.3134 +;-;+;-;-;-;-;-;-;- + 967 NaN NaN 185856.4 NaN 10568 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13553 60.644 NaN 534450 35 0 88313 0.262 + 19623 NVDPDNVVL 9 73 492.75398512443957 983.4934173156792 2 492.7533874511719 MULTI HCD FTMS 0 0 0 13548 226541.5625 0.8085555988560056 -4 0.1080322265625 5 Unmodified _NVDPDNVVL_ ENSG00000116717|ENST00000370986|GADD45A 49.55428908609986 0.03219431099695407 1 {[NV]|[RG]}DYYVV{I|L} 8 3 + 48.558 0 0 4.9373 4.9373 90.876 0 0 0 9.634679910804401 29.093589713900286 9.634679910804401 48.015340305304576 0 1.7134679910804405 0 0.28872548999643577 0.6139829889124311 {[NV]|[RG]}DYYVV{I|L};[KG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[YD]|[{M(Oxidation (M))|F}M]}N{I|L} 4.9373;0.05513 -;- 102 NaN NaN 165051.7 NaN 10569 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13554 60.648 NaN 211120 35 0 23175 0.261 + 35747 YYLQGGFSRF 10 52 619.3038141966312 1236.5930754600622 2 619.3037719726562 MULTI HCD FTMS 0 0 0 13548 143411.375 0.5705498746768393 3 -0.08169937133789062 6 Unmodified _YYLQGGFSRF_ ENSG00000130829|ENST00000342782|DUSP9 35.61225514009592 0.18348312004207498 1 YY{I|L}QN{M(Oxidation (M))|F}SR{M(Oxidation (M))|F} 9 2 + 72.884 0 0 5.894 5.894 87.798 0 0 0 54.92538423561818 9.009461452434238 9.009461452434238 9.208187539523749 0 2.2302046884880937 2 0.25 0 YY{I|L}QN{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};[Q{I|L}][WQ]{[WS]|[C(Carbamidomethyl (C)){I|L}]}N[Y{I|L}] 5.894;5.1493;5.1493;4.4082;0.068651 -;-;+;-;- + 389 + NaN NaN 115506.7 NaN 10570 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13555 60.651 NaN 1134900 35 0 365760 0.264 + 6620 FPLSESDVPLF 11 60 417.5484867073669 1249.6236307223007 3 417.5487976074219 MULTI HCD FTMS 0 0 0 13548 252323.21875 0.4077207228661115 -4 0.1080322265625 7 Unmodified _FPLSESDVPLF_ DENND4C|p.E323*|1|0.22|ENSG00000137145|chr9:19296165-19296166|-/T|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C 7.945399516374404 0.3840748433199446 1 {I|L}{M(Oxidation (M))|F} 2 9 21.454 0 0 1.7168 0 0 971.4609853139008 0 971.4609853139008 0 7.64136888583522 0 0 0 0.3494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.7168 + + 73 + NaN NaN 265970.7 NaN 10571 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13556 60.655 NaN 738050 35 0 55715 0.261 + 35363 YYAYLPAKL 9 109 551.3025439746849 1100.5905350161697 2 551.8164672851562 MULTI HCD FTMS 0 0 0 13548 14086.458984375 0.2331388534208272 2 -0.05229949951171875 8 Unmodified _YYAYLPAKL_ ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-3|TMEM63B 23.1484247019978 0.1603590852062899 1 YYAS 4 6 39.425 0 0 3.5821 0 0 0 613.3692269929853 613.3692269929853 16.902281476392034 0 0 0 0 0.9247425010840047 2 0 0 YYAS 3.5821 - 1281 NaN NaN 195212.4 NaN 10572 2982 13548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13558 60.659 NaN 1391100 35 0 317740 0.327 + 34712 YPVEIHEYL 9 104 581.7924129009604 1161.5702728687206 2 581.79248046875 MULTI HCD FTMS 0 0 0 13557 278526.25 0.07360361371575153 17 -0.4636726379394531 1 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 107.99703571036002 0.003269392969029945 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L} 9 0 + 83.643 0 0 7.2009 7.2009 88.998 0 0 0 12.752399827269684 8.45098040014257 8.45098040014257 8.45098040014257 0 2.3807196863200843 2 0.5044321917401079 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;YPVE{I|L}[Q{I|L}][WD];YPYH{I|L}EVE{I|L};YPYH{I|L}E{I|L}D{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};YPV[WQ]EVE{I|L};YPV[WQ]E{I|L}D{I|L};[YE][VP]{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE[WQ]VE{I|L} 7.2009;6.4733;6.103;6.0482;5.9383;5.7958;4.5991;4.4892;4.4392;4.3467 +;-;-;-;-;-;-;-;-;- + 1585 NaN NaN 293550.2 NaN 10573 2983 13557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13559 60.664 NaN 578880 35 0 93325 0.261 + 5712 FPAGYMYPSM 10 83 598.243611247786 1194.472669562372 2 598.2437133789062 MULTI HCD FTMS 0 0 0 13557 208369.078125 0.5779979119362041 -37 0.9889144897460938 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 59.416 0 0 4.9743 0 0 64.00542938805809 0 64.00542938805809 0 48.61941264025134 0 0 0 0.8807196863200843 0 2.360924374808178 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4.9743 - 316 + NaN NaN 171528.6 NaN 10574 2983 13557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13560 60.667 NaN 502360 35 0 33153 0.261 + 12062 KIYNQYKII 9 83 591.8471525175358 1181.6797521018716 2 591.8295288085938 MULTI HCD FTMS 0 0 0 13557 38288.17578125 0.29755895823173634 -3 0.08855438232421875 3 Unmodified _KIYNQYKII_ REV__tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1 15.847184025352803 0.2234401846867398 1 [K{I|L}]YSQVGQ{I|L} 9 -1 35.744 0 0 3.0249 0 0 0 162.09043299398868 162.09043299398868 20.08385168277917 0 0 0 0 0.15494718957209852 0 1.1976212463643423 0.28872548999643577 [K{I|L}]YSQVGQ{I|L} 3.0249 - 918 NaN NaN 168460.8 NaN 10575 2983 13557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13561 60.671 NaN 933860 35 0 75222 0.261 + 15268 LPAAGVGDMVM 11 112 538.7592438788679 1075.5039348245357 2 538.7597045898438 MULTI HCD FTMS 0 0 0 13557 212704.890625 0.5063779358089366 8 -0.21581649780273438 4 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 92.4914307365334 0.011439422034398083 1 GVGDMV{M(Oxidation (M))|F} 7 4 43.004 0 0 3.9985 0 0 352.2103749005875 0 352.2103749005875 0 13.26872632992739 0 0 0 2.278659694992122 0 0.3252574989159953 0 + GVGDMV{M(Oxidation (M))|F} 3.9985 + + 813 NaN NaN 235356.2 NaN 10576 2983 13557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13562 60.674 NaN 296950 35 0 35415 0.261 + 11592 IYTFPHASF 9 64 541.7689231061971 1081.5232932791941 2 542.2705688476562 MULTI HCD FTMS 0 0 0 13557 34225.5078125 0.0770449297105589 14 -0.3884544372558594 5 Unmodified _IYTFPHASF_ ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 54.773552608820026 0.024892918755467567 1 {I|L}YT{M(Oxidation (M))|F} 4 5 56.186 0 0 5.195 0 0 0 554.2371260766968 554.2371260766968 39.151603310239906 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 + {I|L}YT{M(Oxidation (M))|F} 5.195 + + 119 + NaN NaN 131178.1 NaN 10577 2983 13557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13563 60.677 NaN 320520 35 0 36233 0.261 + 16813 LYECTGQFDF 10 60 611.7578938075267 1221.5012346818532 2 611.7579345703125 MULTI HCD FTMS 0 0 0 13557 112847.796875 0.21651948446586872 -4 0.11143112182617188 6 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 34.93206674587334 0.18938571726943593 1 {[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 64.831 0 0 5.3075 5.3075 86.033 0 0 0 2.0074990971912854 50.093728280886936 2.0074990971912854 9.164539485499255 0 2.3494850021680094 0 0.2742275032520141 0 {[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}S[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}S[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}[MT]{M(Oxidation (M))|F}{[WT]|[RM]};{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}DV{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q[MT]{M(Oxidation (M))|F}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[KP][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]D{M(Oxidation (M))|F} 5.3075;4.5572;4.2214;3.4712;2.2803;2.0338;1.3398;1.3174;1.0933;0.92683 -;-;-;-;-;-;-;-;-;- 521 NaN NaN 136231.1 NaN 10578 2983 13557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13565 60.682 NaN 7254100 35 0 851560 0.327 + 27058 SYMGHFDLL 9 119 549.7497688734081 1097.4849848136162 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13564 6004416.5 0.5796755837576978 -2 0.05229949951171875 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 172.90653553480564 2.2447970467336844E-09 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 95.548 0 0 8.7061 8.7061 94.912 0 0 0 49.85120505172502 9.889917747712644 9.889917747712644 15.445064397082206 0 2.9361818737241734 2 1.4124379954164592 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};[Y{M(Oxidation (M))|F}]SGH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};[Y{M(Oxidation (M))|F}]SGHEV{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}SYH{M(Oxidation (M))|F}D{I|L}{I|L};[Y{M(Oxidation (M))|F}]SGH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{I|L}[YT]EHG{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT] 8.7061;7.2987;6.641;5.0533;4.6746;4.3956;4.1886;4.0168;3.8882;3.5437 +;+;-;-;-;-;-;-;-;- + 5460 + NaN NaN 721967 NaN 10579 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13566 60.686 NaN 1680900 35 0 163220 0.261 + 29055 TYFRFQEEI 9 111 616.8011937070484 1231.5878344808966 2 616.8009643554688 MULTI HCD FTMS 0 0 0 13564 804378.375 0.5949926516173145 -4 0.1113128662109375 2 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 143.21322497773306 1.6000761055044888E-05 1 TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 102.88 0 0 8.3532 8.3532 92.05 0 0 0 57.061245316836576 10.999161495794425 10.999161495794425 9.208187539523749 0 2.7346368802282015 2 2.091129063296272 0.3807196863200844 + + TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};TY{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};TY{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}[AG]N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};TY{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}QGG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};TY{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}[DV]{[RE]|[WV]};[YT]{M(Oxidation (M))|F}REEQ{M(Oxidation (M))|F}{I|L};[YT]{M(Oxidation (M))|F}REE[AG]{M(Oxidation (M))|F}{I|L} 8.3532;7.6055;7.4376;6.6899;6.5062;5.762;5.762;4.9977;4.3304;3.5827 +;-;+;-;-;-;-;-;-;- + 3342 + NaN NaN 343404.3 NaN 10580 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13567 60.69 NaN 2221600 35 0 274830 0.261 -1 MQYYKLHKMIW 11 129 533.5997850481672 1597.7775257447015 3 533.5999755859375 MULTI HCD FTMS 0 0 0 13564 565419.1875 0.713785082584224 -4 0.1113128662109375 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MQYYKLHKM(Oxidation (M))IW_ ENST00000575475.2_1_17:5235261-5235390:+|nuORF 0.09484139111097674 0.41850472438158626 1 SW{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}P 8 -1 64.531 0 0 4.0388 0 0 0 618.3258623819698 618.3258623819698 38.02809901047091 0 0 0 0 1.3807196863200843 1.6989700043360187 1.1549471895720984 0.3054621874040891 SW{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}P 4.0388 - 898 + NaN NaN 426697.3 NaN 10581 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13568 60.693 NaN 1266800 35 0 304820 0.261 + 34713 YPVEIHEYL 9 98 581.7924129009604 1161.5702728687206 2 581.7925415039062 MULTI HCD FTMS 0 0 0 13564 263628.40625 0.06966669525089365 18 -0.49652099609375 4 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 96.28474662873226 0.004361282420133734 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L} 9 0 + 81.891 0 0 7.05 7.05 88.717 0 0 0 13.354954600320653 50.375240784723374 13.354954600320653 8.45098040014257 0 2.3807196863200843 2 0.25 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};YPYH{I|L}E{I|L}D{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}H{I|L}EY;{NN|[MP]|[D{I|L}]|[EV]}PY{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[QA]PDPY{I|L};{NN|[MP]|[D{I|L}]|[EV]}PY{I|L}HE{I|L}Y;{NN|[MP]|[D{I|L}]|[EV]}PY{I|L}HYE{I|L} 7.05;6.3224;5.7666;5.6658;5.6623;4.8553;4.1592;4.0269;3.4317;3.4037 +;-;-;-;-;-;-;-;-;- + 1994 NaN NaN 282109.9 NaN 10582 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13569 60.697 NaN 342520 35 0 176750 0.261 -1 0 54 516.3014341890207 515.2941577224207 1 516.3011474609375 MULTI HCD FTMS 0 0 0 13564 109957.234375 0.5202827653699662 -2 0.05229949951171875 5 NaN NaN 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3 -1 25.93 0 0 5.0321 0 0 74.13770738238004 0 74.13770738238004 0 19.987737688117235 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.0321 - 17 + NaN NaN 139922.1 NaN 10583 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13570 60.7 NaN 367140 35 0 46174 0.261 + 4598 EYLSRHWLF 9 70 625.820268642639 1249.625984352078 2 625.8201293945312 MULTI HCD FTMS 0 0 0 13564 172369.046875 1 0 0 6 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 48.07275321834293 0.03426687821706766 1 [YE]TVRHW{I|L}{M(Oxidation (M))|F} 9 2 + 72.022 0 0 5.7635 5.7635 88.469 0 0 0 9.731274583374997 16.478174818886373 9.731274583374997 9.731274583374997 0 1.4124379954164592 1.154901959985743 1.3494850021680094 0 [YE]TVRHW{I|L}{M(Oxidation (M))|F};[W{I|L}]Y[VS]HW{I|L}{M(Oxidation (M))|F};EY{I|L}SRHW{I|L}{M(Oxidation (M))|F};[YT]EVRHW{I|L}{M(Oxidation (M))|F};[W{I|L}]Y[WH][VS]{I|L}{M(Oxidation (M))|F} 5.7635;4.9847;4.1344;3.8583;3.6261 -;-;+;-;- + 269 NaN NaN 141368.9 NaN 10584 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13571 60.703 NaN 192850 35 0 13570 0.261 + 24722 RYLVEVEEL 9 62 575.3110227958352 1148.6074926584704 2 575.3117065429688 MULTI HCD FTMS 0 0 0 13564 60813.07421875 0.1517635778962881 12 -0.3361930847167969 7 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 47.594388314883695 0.03493607795751234 1 [Y{I|L}]RVEVEE{I|L} 9 2 + 72.259 0 0 6.291 6.291 93.609 0 0 0 16.75083189322727 49.863263264386006 16.75083189322727 62.92751353989288 0 1.5114393726401687 1.5228787452803376 0.2742275032520141 0 [Y{I|L}]RVEVEE{I|L};{[QN]|[E{I|L}]|[KN]}EQ{[QN]|[E{I|L}]|[KN]}[Y{I|L}]{I|L} 6.291;0.81242 -;- 257 NaN NaN 122147.7 NaN 10585 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13572 60.707 NaN 204680 35 0 25099 0.263 + 12651 KWFFQKLRF 9 69 433.91669708106457 1298.7282618433937 3 433.91668701171875 MULTI HCD FTMS 0 0 0 13564 56961.453125 0.0768094395597459 86 -1.9971961975097656 8 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 13.614867670302875 0.2427269026982664 1 KW{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 9 0 + 48.567 0 0 3.7396 3.7396 87.779 0 0 0 46.972893776096214 14.973024840566467 14.973024840566467 22.417665879116623 0 0.3494850021680094 0 0 0 + + KW{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}[WK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 3.7396;2.0134 +;- + 52 + NaN NaN 111035.4 NaN 10586 2984 13564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13574 60.712 NaN 11826000 35 0 2156200 0.327 + 24342 RYIDRIHIFF 10 70 460.59069929921907 1378.7502684978572 3 460.5912170410156 MULTI HCD FTMS 0 0 0 13573 5892421 0.8535882731840689 -1 0.029399871826171875 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 39.922945255915025 0.1460754433722493 1 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 76.063 0 0 5.5168 0 0 547.2757781432298 0 547.2757781432298 0 62.47933455448525 0 0 0 2.7614393726401687 0 0 0.7302046884880937 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5168 + + 360 NaN NaN 697104.1 NaN 10587 2985 13573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13575 60.716 NaN 513310 35 0 65451 0.261 + 7497 FWGFLFGLLFF 11 69 465.25024285331233 1392.728899160137 3 465.5849304199219 MULTI HCD FTMS 0 0 0 13573 63612.8671875 0.16149096890214065 -2 0.052158355712890625 2 Unmodified _FWGFLFGLLFF_ REV__ENSG00000086205|ENST00000256999|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1;REV__nc|ENSG00000086205|Q04609-4|FOLH1;REV__nc|ENSG00000086205|Q04609-8|FOLH1 16.565877749689598 0.3127433757948945 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 38.94 0 0 2.796 0 0 967.4983099349236 0 967.4983099349236 0 27.201140738196017 0 0 0 1.274227503252014 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.796 + + 61 NaN NaN 157547.2 NaN 10588 2985 13573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13576 60.72 NaN 240550 35 0 19997 0.261 + 2567 DTGWMYRLI 9 65 577.7868942659918 1153.5592355987835 2 577.7872314453125 MULTI HCD FTMS 0 0 0 13573 38719.6640625 0.143060780691615 21 -0.5852813720703125 3 Unmodified _DTGWMYRLI_ REV__ENSG00000110344|ENST00000252108|UBE4A;REV__nc|ENSG00000110344|Q14139-2|UBE4A 6.2057823575117 0.30397260197431997 1 {I|L}{I|L} 2 -1 25.969 0 0 2.2512 0 0 909.3818546741004 0 909.3818546741004 0 21.365006360318688 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2512 + + 22 NaN NaN 113011.1 NaN 10589 2985 13573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13577 60.723 NaN 257980 35 0 29740 0.263 + 9981 IEKAKQDVLYL 11 67 440.59070454753385 1318.7502842428016 3 440.59100341796875 MULTI HCD FTMS 0 0 0 13573 32742.5546875 0.1320939918741201 17 -0.4671211242675781 4 Unmodified _IEKAKQDVLYL_ REV__ENSG00000171617|ENST00000302351|ENC1;REV__nc|ENSG00000171617|O14682-2|ENC1 6.234356020891411 0.3915788988406848 1 {M(Oxidation (M))|F}Q{I|L} 3 -1 34.693 0 0 2.6307 0 0 912.5280018823115 0 912.5280018823115 0 9.771212547196626 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}Q{I|L} 2.6307 - 145 NaN NaN 125904.6 NaN 10590 2985 13573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13578 60.726 NaN 297980 35 0 22243 0.261 + -1 AFDFKPEMI 9 80 557.2679998904276 1112.5214468476552 2 557.2686157226562 MULTI HCD FTMS 0 0 0 13573 43158.46484375 0.47058412388232423 -1 0.029399871826171875 5 Oxidation (M) _AFDFKPEM(Oxidation (M))I_ REV__ENSG00000186951|ENST00000407236|PPARA 8.155526934196011 0.2891920862272901 1 APP{M(Oxidation (M))|F} 4 -1 21.938 0 0 1.9719 0 0 0 697.3304564865867 697.3304564865867 -1.3502935127679194 0 -1.3502935127679194 0 0 0 0 0 0 APP{M(Oxidation (M))|F} 1.9719 - 180 + NaN NaN 129372.3 NaN 10591 2985 13573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13580 60.731 NaN 3458000 35 0 1609700 0.327 + 30439 VLPNRPFGLF 10 93 580.3346179869756 1158.654683040751 2 580.3350219726562 MULTI HCD FTMS 0 0 0 13579 1722083.125 0.9247658477151445 2 -0.058990478515625 1 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 30.636539890814138 0.2266618088935899 1 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}P 8 6 74.276 0 0 6.4106 0 0 0 290.1142672174438 290.1142672174438 47.276296993281406 0 0 0 0 2.2059771852360797 1.6989700043360187 0 0.4247425010840047 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}P 6.4106 - 402 + NaN NaN 608275.4 NaN 10592 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13581 60.735 NaN 731610 35 0 94854 0.261 + 12727 KYAMMFAEL 9 87 560.264004709818 1118.5134564864359 2 560.2643432617188 MULTI HCD FTMS 0 0 0 13579 550793.9375 1 0 0 2 Oxidation (M) _KYAMM(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 82.5293158979368 0.005033931517079822 1 {I|L}CM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 8 3 67.787 0 0 6.0604 0 0 146.10393521628515 0 146.10393521628515 0 50.33948926447343 0 0 0 2.555462187404089 0 1.6393016935150575 0 {I|L}CM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 6.0604 - 1329 + NaN NaN 197756.1 NaN 10593 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13582 60.739 NaN 512220 35 0 52853 0.261 + 20348 NYSNIRFQF 9 77 594.7927727369674 1187.5709925407348 2 594.7939453125 MULTI HCD FTMS 0 0 0 13579 383835.75 0.7321836128014568 5 -0.14409637451171875 3 Unmodified _NYSNIRFQF_ ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 107.09958533191995 0.0034159042678574016 1 NYSN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 0 + 85.186 0 0 7.1731 7.1731 90.099 0 0 0 71.99864366769575 9.251736484954378 9.251736484954378 9.208187539523749 0 2.4291746928241125 2 0.3494850021680094 0.6307196863200843 + + NYSN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};NYSGG[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 7.1731;6.3978 +;- + 330 + NaN NaN 157320.1 NaN 10594 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13583 60.742 NaN 1234300 35 0 110740 0.264 + 12859 KYFLWEEKF 9 88 430.55693993605934 NaN 0 430.556884765625 PEAK HCD FTMS 0 0 0 13579 443637.71875 1 0 0 4 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 39.212999716063884 0.08079931377422125 1 W{I|L} 2 8 5.5732 0 0 0.64873 0 0 121.70926036348449 435.20389152903664 556.9131518925211 0 0 0 0 0 0 0 0 0 W{I|L} 0.64873 - 35 + NaN NaN 269113.8 NaN 10595 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13584 60.746 NaN 382410 35 0 25999 0.261 + 12856 KYFLWEEKF 9 78 645.3316588060501 1288.6487646789 2 645.3318481445312 MULTI HCD FTMS 0 0 0 13579 191525.171875 0.76618884710422 -2 0.048961639404296875 5 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 88.5755730146405 0.0045632923827971465 1 [YK]{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F} 9 0 + 81.819 0 0 6.3492 6.3492 92.089 0 0 0 6.2093769227962525 66.64197490877392 6.2093769227962525 24.92992819099939 0 2.6989700043360187 0 0.6747425010840047 0.6989700043360187 + + [YK]{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{I|L}WE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[YK]{M(Oxidation (M))|F}{I|L}[VS][HC][RH];[{M(Oxidation (M))|F}V]{[SA]|[TG]}E[W{I|L}]YK{M(Oxidation (M))|F} 6.3492;4.4147;1.72;0.58853 +;-;-;- + 293 NaN NaN 154872.6 NaN 10596 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13585 60.749 NaN 399030 35 0 64915 0.264 + 12550 KSMGVASRHEY 11 63 422.2083682373464 1263.6032753122392 3 422.2085266113281 MULTI HCD FTMS 0 0 0 13579 148128.78125 1 0 0 6 Unmodified _KSMGVASRHEY_ ENST00000491618.1_1_20:32210926-32212581:+|nuORF;nc|ENSG00000078699|O43439-3|CBFA2T2 2.2527281973983926 0.4090409658946738 1 {M(Oxidation (M))|F} 1 10 16.99 0 0 1.3445 0 0 1098.5242785854798 0 1098.5242785854798 0 -1.1978875828839364 -1.1978875828839364 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3445 + + 22 + NaN NaN 140081.9 NaN 10597 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13586 60.752 NaN 695200 35 0 94299 0.261 -1 ELAQVLPQM 9 74 522.7733472075221 NaN 0 522.7737426757812 PEAK HCD FTMS 0 0 0 13579 95204.203125 0.5486659275563869 7 -0.19984817504882812 7 Oxidation (M) _ELAQVLPQM(Oxidation (M))_ ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000543049.1_1_16:57114926-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;nc|ENSG00000140853|Q86WI3-4|NLRC5 30.636539890814138 0.11600348607007434 1 {M(Oxidation (M))|F}QVYPQ 6 -1 38.409 0 0 3.6807 0 0 116.11618852913428 162.0229891412719 278.1391776704062 0 0 0 0 0 0.9247425010840047 0 0 0.7302046884880937 {M(Oxidation (M))|F}QVYPQ 3.6807 - 353 + NaN NaN 194032.5 NaN 10598 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13587 60.756 NaN 470190 35 0 56945 0.261 + -1 YMDCTTCLE 9 71 576.2054356689324 1150.3963184046647 2 576.2056884765625 MULTI HCD FTMS 0 0 0 13579 134168.890625 0.9312459093731276 -2 0.048961639404296875 8 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))DC(Carbamidomethyl (C))TTCLE_ REV__ENST00000559471.5_1_15:49283317-49283419:-|nuORF 8.593279151180031 0.2858735984551981 1 E 1 -1 4.6041 0 0 0.40022 0 0 260.9210363693389 757.4074801080686 1018.3285164774074 0 0 0 0 0 0 0 0 0 E 0.40022 + + 39 + NaN NaN 160162 NaN 10599 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13588 60.759 NaN 332950 35 0 34408 0.261 + 35926 YYTLGDSACTF 11 72 620.7631415492712 1239.5117301653422 2 620.7633056640625 MULTI HCD FTMS 0 0 0 13579 224549.40625 0.771901511827078 -7 0.1831512451171875 9 Unmodified _YYTLGDSACTF_ REV__ENSG00000127578|ENST00000319070|WFIKKN1;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 18.1463463914782 0.2989727007011538 1 EQEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 67.581 0 0 5.4522 0 0 298.13218886543126 0 298.13218886543126 0 57.403726003536306 0 0 0 0.5 0 1.5114393726401687 0 EQEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.4522 - 377 NaN NaN 142402.6 NaN 10600 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13589 60.762 NaN 271510 35 0 34474 0.261 -1 CGIMHCSEDH 10 68 631.2241239645217 1260.4336949958433 2 631.2240600585938 MULTI HCD FTMS 0 0 0 13579 159451.953125 1 0 0 10 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))GIM(Oxidation (M))HC(Carbamidomethyl (C))SEDH_ ENST00000340424.4_1_20:1651794-1678423:-|nuORF 1.844237919475145 0.46554186016084764 1 PQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5 -1 39.336 0 0 3.1208 0 0 608.1453724591812 0 608.1453724591812 0 3.8021124171160636 0 0 0 1.1861818737241734 0 0 0 PQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.1208 - 135 NaN NaN 127493.4 NaN 10601 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13590 60.766 NaN 325880 35 0 28220 0.261 + 3507 EIAHAYYDM 9 90 556.7394519253071 1111.464350917414 2 556.738525390625 MULTI HCD FTMS 0 0 0 13579 141756.90625 0.6795811760690916 -1 0.019561767578125 11 Unmodified _EIAHAYYDM_ ENSG00000198954|ENST00000361983|KIFBP 11.640296217721598 0.25978676193971967 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F} 4 7 29.116 0 0 2.6196 0 0 0 571.2204880010099 571.2204880010099 6.15697254787009 0 0 0 0 0 0.8538719643217619 0.3252574989159953 1.066901560044258 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F} 2.6196 - 138 NaN NaN 126206.5 NaN 10602 2986 13579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13592 60.771 NaN 6605900 35 0 857170 0.327 + 13295 KYMDVQFDF 9 109 604.7680796891424 1207.5216064450847 2 604.7685546875 MULTI HCD FTMS 0 0 0 13591 3815602.5 0.7206742973047732 -1 0.039485931396484375 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 173.68634876852585 1.8204875074637502E-09 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 91.833 0 0 7.605 7.605 86.413 0 0 0 1.036911255848807 11.614751552698607 1.036911255848807 1.036911255848807 0 2.305462187404089 0 1.6404039732413214 1.031234684152075 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}VDQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVDQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.605;7.5192;7.4882;6.8673;6.8425;6.7566;6.7505;6.7257;6.518;6.4006 +;-;-;-;-;-;-;-;-;- + 9395 NaN NaN 692581.1 NaN 10603 2987 13591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13593 60.775 NaN 1437800 35 0 234410 0.261 + -1 CIWHELRTRRR 11 106 528.2880086163295 1581.8421964491886 3 528.6224975585938 MULTI HCD FTMS 0 0 0 13591 243515.703125 0.4345160660765317 1 -0.019504547119140625 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))IWHELRTRRR_ REV__ENST00000521604.6_1_8:54923030-54934756:-|nuORF 0.09484139111097674 0.41850472438158626 1 VYAA[R{M(Oxidation (M))|F}]{I|L}[R{M(Oxidation (M))|F}]VN 11 -1 89.456 0 0 5.6552 0 0 0 242.11428247623283 242.11428247623283 54.291073064864534 0 0 0 0 1.6747425010840047 2 0 1.3737125054200234 VYAA[R{M(Oxidation (M))|F}]{I|L}[R{M(Oxidation (M))|F}]VN 5.6552 - 2595 + NaN NaN 307295.7 NaN 10604 2987 13591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13594 60.779 NaN 715710 35 0 62102 0.261 + 1251 AYLSGMLRF 9 95 537.2760549191852 1072.5375569051703 2 537.2763061523438 MULTI HCD FTMS 0 0 0 13591 225693.28125 0.7366874842022222 6 -0.16036224365234375 3 Oxidation (M) _AYLSGM(Oxidation (M))LRF_ ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF;nc|ENSG00000167881|Q9UHB9-2|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68 110.6747026088012 0.0028322563155251486 1 AY{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F} 9 0 + 102.9 0 0 9.5944 9.5944 97.45 0 0 0 75.28450353020801 14.973024840566467 14.973024840566467 30.733134811479204 0 2.5356668758921828 1.6989700043360187 1.0994850021680094 0 + + AY{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}GS{I|L}{[ES]|[DT]|[{I|L}C]};AY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};AY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}S{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SYQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SG{M(Oxidation (M))|F}S{I|L}{[ES]|[DT]|[{I|L}C]};AY{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}YA;AY{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[{M(Oxidation (M))|F}V]A{M(Oxidation (M))|F} 9.5944;6.729;6.5899;6.3574;6.2841;6.2324;6.1689;5.7997;5.4167;5.3969 +;-;-;-;-;-;-;-;-;- + 1270 + NaN NaN 192179.9 NaN 10605 2987 13591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13595 60.782 NaN 551010 35 0 140410 0.261 + 32004 VYPLMKEYF 9 81 603.2993101230447 1204.5840673128894 2 603.2994995117188 MULTI HCD FTMS 0 0 0 13591 234171.65625 0.055804330494561995 77 -1.7390327453613281 4 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 47.594388314883695 0.03493607795751234 1 VYP{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F} 9 0 + 77.598 0 0 6.4419 6.4419 92.596 0 0 0 46.39969987625378 15.915149811213496 15.915149811213496 29.51544993495972 0 1.774227503252014 2 0.2742275032520141 0 + + VYP{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]ST{[CP]|[EA]}{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F} 6.4419;3.9916;1.338 +;-;- + 448 + NaN NaN 183654.9 NaN 10606 2987 13591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13596 60.785 NaN 247340 35 0 37910 0.263 + 19624 NVDPDNVVL 9 61 492.75398512443957 983.4934173156792 2 492.7532958984375 MULTI HCD FTMS 0 0 0 13591 134801.5625 0.48112389131205346 1 -0.019504547119140625 5 Unmodified _NVDPDNVVL_ ENSG00000116717|ENST00000370986|GADD45A 22.65808497894818 0.16459551161911185 1 {[NV]|[RG]}DYYVV{I|L} 8 3 + 36.304 0 0 3.6913 3.6913 88.712 0 0 0 1.2987937295688567 14.582203056413121 1.2987937295688567 36.30387817565364 0 1.566901560044258 0 0 0 {[NV]|[RG]}DYYVV{I|L} 3.6913 - 63 NaN NaN 116956.3 NaN 10607 2987 13591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13598 60.79 NaN 846150 35 0 283480 0.327 -1 0 69 427.3025079880766 852.5904630429533 2 427.3026428222656 MULTI HCD FTMS 0 0 0 13597 329060 0.3277639190378994 20 -0.5623970031738281 1 NaN NaN 1 S{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{M(Oxidation (M))|F} 6 -1 19.526 0 0 2.2902 0 0 162.34639673611576 0 162.34639673611576 0 12.535918783769095 0 0 0 0 0 0.2614393726401688 0 S{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{M(Oxidation (M))|F} 2.2902 - 88 + NaN NaN 217026.3 NaN 10608 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13599 60.794 NaN 517400 35 0 58970 0.261 + 644 APIRPDIVNF 10 94 571.3217938869849 1140.6290348407697 2 571.322021484375 MULTI HCD FTMS 0 0 0 13597 314427.8125 0.5194622620361545 4 -0.108001708984375 2 Unmodified _APIRPDIVNF_ ENSG00000174444|ENST00000307961|RPL4;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF 42.312485326615175 0.12533928745458864 1 A[DP]{I|L}VN{M(Oxidation (M))|F} 7 3 55.406 0 0 4.8575 0 0 366.23811537910314 0 366.23811537910314 0 39.69228530870048 0 0 0 2 0 0 0.3054621874040891 A[DP]{I|L}VN{M(Oxidation (M))|F} 4.8575 - 633 NaN NaN 173757.4 NaN 10609 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13600 60.798 NaN 514350 35 0 83739 0.261 + 15508 LPDMVVSHL 9 76 505.77034559967217 1009.5261382661444 2 505.77056884765625 MULTI HCD FTMS 0 0 0 13597 269687.375 0.32820194613576065 8 -0.228240966796875 3 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 88.95385435242217 0.004553379958619559 1 {I|L}PDMVVSH{I|L} 9 0 + 94.452 0 0 9.3561 9.3561 90.313 0 0 0 31.706962271689747 4.005149978319906 4.005149978319906 4.005149978319906 0 2.638210492164445 1.5228787452803376 0.4247425010840047 0 + + {I|L}PDMVVSH{I|L};{I|L}PDMVVHS{I|L};[{I|L}P]DMVVSH{I|L};[{I|L}P][EC]{I|L}VSH{I|L};[{I|L}P]D{[ES]|[DT]|[{I|L}C]}{I|L}SH{I|L};[DP]{I|L}MVVSH{I|L};[MD]P{I|L}VVSH{I|L};[{I|L}P]DMV[HS]V{I|L};[DP]M{I|L}VVSH{I|L};[{I|L}P][EC]V{I|L}SH{I|L} 9.3561;8.9593;7.5279;5.637;5.3427;5.2259;5.2037;4.9781;4.7268;4.6691 +;-;+;-;-;-;-;-;-;- + 673 + NaN NaN 160878 NaN 10610 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13601 60.801 NaN 1498900 35 0 478210 0.262 + 6621 FPLSESDVPLF 11 64 417.5484867073669 1249.6236307223007 3 417.5487365722656 MULTI HCD FTMS 0 0 0 13597 513812.875 0.8302531881557769 2 -0.0589447021484375 4 Unmodified _FPLSESDVPLF_ DENND4C|p.E323*|1|0.22|ENSG00000137145|chr9:19296165-19296166|-/T|frameshift_variant;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C 7.945399516374404 0.3840748433199446 1 {M(Oxidation (M))|F} 1 10 20.797 0 0 1.6643 0 0 1084.544557701596 0 1084.544557701596 0 9.37022187087372 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F} 1.6643 + + 44 + NaN NaN 303068.7 NaN 10611 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13602 60.805 NaN 947420 35 0 81790 0.261 + 17026 LYIVHPTMF 9 104 568.7940859161241 1135.5736188990481 2 568.7942504882812 MULTI HCD FTMS 0 0 0 13597 272650.875 0.6062935132750669 8 -0.228240966796875 5 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 117.59872219059416 0.0017018906413822257 1 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 100.06 0 0 8.8118 8.8118 96.643 0 0 0 67.72038431917139 15.056584229283843 15.056584229283843 30.560931587959672 0 2.0994850021680094 2 0.9049471895720984 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[MD]V{M(Oxidation (M))|F};{I|L}Y{I|L}VC{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]};[Y{I|L}]V{I|L}HPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[MD]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EV[PA][WK]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}V[PA][WK]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[EP]KKV{M(Oxidation (M))|F} 8.8118;6.1206;5.4241;5.1261;4.9361;4.5892;4.2396;0.77715;0.69181;0.62208 +;+;-;-;-;-;-;-;-;- + 1250 + NaN NaN 228260.2 NaN 10612 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13603 60.808 NaN 541320 35 0 30182 0.261 + -1 CVWLWRMNFRF 11 104 544.2631037210124 1629.767481763237 3 544.5978393554688 MULTI HCD FTMS 0 0 0 13597 37764.8828125 0.22604062563887892 1 -0.032749176025390625 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VWLWRM(Oxidation (M))NFRF_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|158|1|anti-sense 0.5059551277355931 0.4167017191902429 1 VT{M(Oxidation (M))|F}[NP]{M(Oxidation (M))|F}{[CP]|[EA]}S 9 -1 34.389 0 0 2.1101 0 0 619.3336850865873 0 619.3336850865873 0 12.310990509216502 0 0 0 0.8807196863200843 0 0.4247425010840047 0.3252574989159953 VT{M(Oxidation (M))|F}[NP]{M(Oxidation (M))|F}{[CP]|[EA]}S 2.1101 - 368 NaN NaN 180019.4 NaN 10613 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13604 60.811 NaN 362760 35 0 48337 0.261 + 13692 KYPHYFPLL 9 75 589.3237730376378 1176.6329931420755 2 589.3240966796875 MULTI HCD FTMS 0 0 0 13597 184964.203125 0.35614308675519496 8 -0.228240966796875 7 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 101.72198241140316 0.004218805956062179 1 KYPHY{M(Oxidation (M))|F}P{I|L}{I|L} 9 0 + 61.565 0 0 5.2323 5.2323 85.467 0 0 0 35.12456261857125 7.900217704352457 7.900217704352457 8.328956512079344 0 2.774227503252014 0 0 0 + + KYPHY{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}P{I|L}{I|L} 5.2323;4.5244 +;- + 360 + NaN NaN 135596.6 NaN 10614 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13605 60.815 NaN 319900 35 0 18486 0.261 + 5108 FEKVIVMNT 9 75 540.7917441954914 NaN 0 540.8094482421875 PEAK HCD FTMS 0 0 0 13597 41298.5546875 0.8822166067434088 -1 0.019504547119140625 8 Unmodified _FEKVIVMNT_ REV__ENSG00000184205|ENST00000375442|TSPYL2;REV__ENST00000553557.5_1_X:53113753-53114504:+|nuORF;REV__ENST00000556808.1_1_X:53112313-53114116:+|nuORF;REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant 16.149105407346934 0.21324626030841579 1 {M(Oxidation (M))|F}NA{I|L}V 5 -1 19.553 0 0 1.8111 0 0 131.05503323158877 401.21946130924067 532.2744945408294 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}NA{I|L}V 1.8111 - 300 + NaN NaN 134928.5 NaN 10615 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13606 60.818 NaN 366810 35 0 22480 0.261 + 12857 KYFLWEEKF 9 81 645.3316588060501 1288.6487646789 2 645.8335571289062 MULTI HCD FTMS 0 0 0 13597 211591.578125 1 0 0 9 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 102.5486954659897 0.004158849840221075 1 [YK]{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F} 9 0 + 86.723 0 0 6.7298 6.7298 86.903 0 0 0 10.696238956517888 5.440680443502757 5.440680443502757 5.440680443502757 0 2.274227503252014 0 0.6861818737241735 1.329689690656103 + + [YK]{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{I|L}WEE{M(Oxidation (M))|F}K;KY{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YK]{I|L}WEEK{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{I|L}WE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[{M(Oxidation (M))|F}E]K{M(Oxidation (M))|F}W{I|L}[YK]E;[{M(Oxidation (M))|F}E]KE[W{I|L}]YK{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{I|L}[VS][HC][RH];[{M(Oxidation (M))|F}E]KE[W{I|L}]Y{M(Oxidation (M))|F}K;[{M(Oxidation (M))|F}E]K{M(Oxidation (M))|F}W{I|L}[YE]K 6.7298;6.3076;5.8998;5.6251;5.2514;2.1617;1.9534;1.7846;1.5312;1.3095 +;-;+;-;-;-;-;-;-;- + 641 NaN NaN 140153 NaN 10616 2988 13597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13608 60.823 NaN 11370000 35 0 1354000 0.327 + 27059 SYMGHFDLL 9 117 549.7497688734081 1097.4849848136162 2 549.7503662109375 MULTI HCD FTMS 0 0 0 13607 8895960 0.8588296308367563 3 -0.07525253295898438 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 205.38476747452182 1.0887821914790787E-17 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 100.8 0 0 9.1847 9.1847 96.321 0 0 0 49.67642626199485 9.889917747712644 9.889917747712644 21.083245659840472 0 2.916386562212267 2 1.957552011530992 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};[Y{M(Oxidation (M))|F}]SGH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}{I|L}D{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{M(Oxidation (M))|F}D{I|L};[Y{M(Oxidation (M))|F}]SGH{M(Oxidation (M))|F}{I|L}D{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{M(Oxidation (M))|F}{I|L};{I|L}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}HGEYS;[Y{M(Oxidation (M))|F}]SGH{I|L}{M(Oxidation (M))|F}D{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{[{M(Oxidation (M))|F}C]|[YS]}H{M(Oxidation (M))|F}D{I|L}{I|L} 9.1847;7.2637;6.3733;5.8207;5.1219;4.9304;4.8099;4.3235;4.2316;3.9618 +;+;-;-;-;-;-;-;-;- + 4751 + NaN NaN 672945.8 NaN 10617 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13609 60.827 NaN 551130 35 0 67054 0.261 + 16814 LYECTGQFDF 10 66 611.7578938075267 1221.5012346818532 2 611.7579345703125 MULTI HCD FTMS 0 0 0 13607 346235.03125 0.6643162963412877 2 -0.052356719970703125 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 49.55428908609986 0.07941048486997417 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 70.591 0 0 5.779 5.779 83.886 0 0 0 5.548764455985662 49.68765315847925 5.548764455985662 2.5134875797167666 0 2.3494850021680094 0 1.5669015600442577 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}E{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}[TA]M{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QE[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.779;5.5732;5.2144;5.1748;5.0287;4.823;4.7864;4.5874;4.4606;4.4606 -;-;-;-;-;-;-;-;-;- 657 NaN NaN 168041 NaN 10618 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13610 60.831 NaN 665230 35 0 113610 0.261 + 5713 FPAGYMYPSM 10 83 598.243611247786 1194.472669562372 2 598.243896484375 MULTI HCD FTMS 0 0 0 13607 237516.328125 0.6588498780257984 -31 0.8488197326660156 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 1 M[PS][YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 2 + 61.731 0 0 5.168 5.168 83.674 0 0 0 0.17097795568552954 4.322581265925436 0.17097795568552954 4.322581265925436 0 2.4489700043360187 0 1.836696871556164 0 M[PS][YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PY{M(Oxidation (M))|F}[VS]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F} 5.168;4.8061;4.5755;4.5556;4.2583;4.0964;3.822;0.40977 -;-;+;-;-;-;-;- + 370 + NaN NaN 188505.9 NaN 10619 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13611 60.834 NaN 329640 35 0 21750 0.261 + 12826 KYERIFTLL 9 72 591.8471525175358 1181.6797521018716 2 591.8299560546875 MULTI HCD FTMS 0 0 0 13607 53212.26171875 0.4135424276321797 3 -0.07525253295898438 4 Unmodified _KYERIFTLL_ ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000102786|Q9UL03-3|INTS6 19.361941925380144 0.1930734562688509 1 KYE 3 6 17.765 0 0 1.5033 0 0 0 758.4551485650999 758.4551485650999 8.895840698003004 0 0 0 0 0.3494850021680094 0 0 0 + KYE 1.5033 + + 178 + NaN NaN 152701.2 NaN 10620 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13612 60.837 NaN 217350 35 0 25385 0.264 + 25333 SDIVGVAF 8 61 404.21577999939 806.41700706558 2 404.2160339355469 MULTI HCD FTMS 0 0 0 13607 124665.6484375 1 0 0 5 Unmodified _SDIVGVAF_ ENSG00000100078|ENST00000215885|PLA2G3 26.34127834903884 0.3999841173197873 1 DD{I|L}{I|L}GK{M(Oxidation (M))|F} 7 4 + 68.643 0 0 8.5121 8.5121 96.151 0 0 0 0.463402473028097 0.463402473028097 0.463402473028097 29.28531218377971 0 2.1677353201839438 1.3979400086720375 1.0010912013506126 0 DD{I|L}{I|L}GK{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{I|L}[TP]K{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{I|L}{[VA]|[{I|L}G]}[VG]{M(Oxidation (M))|F} 8.5121;4.8806;2.2581 -;-;- 73 NaN NaN 130148.6 NaN 10621 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13613 60.841 NaN 351710 35 0 22286 0.261 -1 MLLADQGQSW 10 77 582.7701204618585 NaN 0 582.7691650390625 PEAK HCD FTMS 0 0 0 13607 65609.4375 0.24570053726388283 -26 0.7174263000488281 6 Oxidation (M) _M(Oxidation (M))LLADQGQSW_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000489040.1_1_11:67351618-67352251:+|nuORF;ENST00000494593.1_1_11:67351834-67352083:+|nuORF 24.020572477871973 0.24806657497419846 1 PYT 3 -1 12.92 0 0 1.1104 0 0 63.00603041130382 736.3493746393186 799.3554050506225 0 0 0 0 0 0.4247425010840047 0 0 0 PYT 1.1104 - 285 + NaN NaN 154401.2 NaN 10622 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13614 60.844 NaN 279320 35 0 23474 0.263 + 26637 SWPRGVSEKEF 11 70 441.2214510599247 NaN 0 441.2214660644531 PEAK HCD FTMS 0 0 0 13607 33685.60546875 0.6644064226381793 2 -0.052356719970703125 7 Unmodified _SWPRGVSEKEF_ ENST00000561481.1_1_16:74497146-74501752:-|nuORF 11.631370582801994 0.3091252947841038 1 E 1 10 9.2917 0 0 1.0554 0 0 329.1693135792521 419.1952209280167 748.3645345072688 0 0 0 0 0 0 0 0.3807196863200844 0 + E 1.0554 + + 65 + NaN NaN 137339.5 NaN 10623 2989 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13616 60.849 NaN 7908100 35 0 1467700 0.326 + 24343 RYIDRIHIFF 10 86 460.59069929921907 1378.7502684978572 3 460.5912780761719 MULTI HCD FTMS 0 0 0 13615 3077943.5 0.4458772509844645 4 -0.10681533813476562 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 33.82136114134338 0.19902429369531874 1 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 71.631 0 0 5.1954 0 0 547.2754920312419 0 547.2754920312419 0 53.21456278567766 0 0 0 2.3494850021680094 0 0 0.6989700043360187 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1954 + + 290 NaN NaN 790212.3 NaN 10624 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13617 60.853 NaN 1450800 35 0 159030 0.261 + 29056 TYFRFQEEI 9 98 616.8011937070484 1231.5878344808966 2 616.8009033203125 MULTI HCD FTMS 0 0 0 13615 737168.3125 0.5452778724224606 2 -0.0490570068359375 2 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 117.83759599426817 0.001662893820975323 1 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 95.205 0 0 7.7302 7.7302 91.015 0 0 0 3.6497064872320806 3.6497064872320806 3.6497064872320806 9.208187539523749 0 2.4916440611282624 2 0.75 0.6747425010840047 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}[AG]N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}QGG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}REEQ{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][YT]{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}REE[AG]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NQ{M(Oxidation (M))|F}[TA]TY{I|L};[R{M(Oxidation (M))|F}][YT]{M(Oxidation (M))|F}[AG]EE{I|L} 7.7302;6.9826;5.8442;5.1001;5.1001;4.661;4.3576;3.9134;3.7361;3.6099 +;-;-;-;-;-;-;-;-;- + 2449 NaN NaN 304986.7 NaN 10625 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13618 60.857 NaN 1681600 35 0 211450 0.261 -1 MQYYKLHKMIW 11 128 533.5997850481672 1597.7775257447015 3 533.5999145507812 MULTI HCD FTMS 0 0 0 13615 286622.09375 0.36183168060211424 2 -0.0490570068359375 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MQYYKLHKM(Oxidation (M))IW_ ENST00000575475.2_1_17:5235261-5235390:+|nuORF 0.09484139111097674 0.41850472438158626 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}R[Q{I|L}]VDK{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 12 -1 + 50.859 0 0 3.1831 3.1831 81.181 0 0 0 12.42646942931649 8.952101040696014 8.952101040696014 4.335065145321238 0 1.5 1.6989700043360187 0.6989700043360187 0.3252574989159953 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}R[Q{I|L}]VDK{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}WK[KA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EWS;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[KT]DSVVKEWS;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QVVKEAAM;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}R[Q{I|L}]VDK{M(Oxidation (M))|F}AAM;[YK]EK[TP]SD[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YQ]EKVVSD[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YV][VP]{[QD]|[EN]|[WG]|[KD]|[RS]}TNDK{M(Oxidation (M))|F}WS;[YK]{M(Oxidation (M))|F}KDNT{[QD]|[EN]|[WG]|[KD]|[RS]}[VP]P{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}QDNT{[QD]|[EN]|[WG]|[KD]|[RS]}[VP]P{M(Oxidation (M))|F} 3.1831;2.9118;2.8636;2.7722;2.7518;2.0582;2.0582;2.0094;1.9951;1.9951 -;-;-;-;-;-;-;-;-;- 3011 NaN NaN 340746.7 NaN 10626 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13619 60.86 NaN 283050 35 0 35252 0.261 + 4599 EYLSRHWLF 9 76 625.820268642639 1249.625984352078 2 625.8196411132812 MULTI HCD FTMS 0 0 0 13615 55434.2265625 0.32160197882105973 6 -0.1692962646484375 4 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 46.0223103267499 0.037698999139422325 1 E{I|L}YSRHW{I|L}{M(Oxidation (M))|F} 9 2 + 43.114 0 0 3.4502 3.4502 79.687 0 0 0 32.145096999615745 4.481296909728201 4.481296909728201 0.7918124604762511 0 1.2302046884880937 0 0 0 E{I|L}YSRHW{I|L}{M(Oxidation (M))|F};EY{I|L}SRHW{I|L}{M(Oxidation (M))|F};[NP]{[HG]|PP}S[VG]HW{I|L}{M(Oxidation (M))|F};[NP]W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}W{I|L}{M(Oxidation (M))|F} 3.4502;3.3868;1.0388;1.0085 -;+;-;- + 287 + NaN NaN 145774.4 NaN 10627 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13620 60.864 NaN 236230 35 0 19613 0.263 + 18176 MPDLDLHL 8 66 485.2389979417569 968.4634429503138 2 485.2388610839844 MULTI HCD FTMS 0 0 0 13615 60792.61328125 0.7153530471561206 -8 0.21919631958007812 5 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 63.562846038646086 0.043804331777645124 1 {I|L}H{I|L} 3 5 27.664 0 0 2.8565 0 0 587.2256643825099 0 587.2256643825099 0 14.168950068207451 0 0 0 0.9247425010840047 0 0 0 + {I|L}H{I|L} 2.8565 + + 120 NaN NaN 133295.6 NaN 10628 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13621 60.867 NaN 266240 35 0 38312 0.261 + 7498 FWGFLFGLLFF 11 52 465.25024285331233 1392.728899160137 3 465.2504577636719 MULTI HCD FTMS 0 0 0 13615 55078.76953125 0.09441232483973394 3 -0.08191299438476562 6 Unmodified _FWGFLFGLLFF_ REV__ENSG00000086205|ENST00000256999|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1;REV__nc|ENSG00000086205|Q04609-4|FOLH1;REV__nc|ENSG00000086205|Q04609-8|FOLH1 8.444304893310646 0.381886813817475 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.5991 0 0 967.4979055149905 0 967.4979055149905 0 29.20818753952375 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5991 + + 28 NaN NaN 117687.1 NaN 10629 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13622 60.87 NaN 125120 35 0 21254 0.261 + 25113 SAEVTPPVL 9 36 456.7554637599523 911.4963745867046 2 456.7561950683594 MULTI HCD FTMS 0 0 0 13615 31877.185546875 0.48725675105860616 -3 0.07844924926757812 7 Unmodified _SAEVTPPVL_ ENSG00000156030|ENST00000423556|MIDEAS;nc|ENSG00000156030|Q6PJG2|MIDEAS 15.847184025352803 0.2234401846867398 1 T[RH]{I|L} 4 7 26.555 0 0 2.9133 0 0 386.1798573224625 0 386.1798573224625 0 11.861818737241734 0 0 0 0.9247425010840047 0 0.3494850021680094 0 T[RH]{I|L} 2.9133 - 22 NaN NaN 118879.2 NaN 10630 2990 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13624 60.875 NaN 1399000 35 0 637220 0.327 + 30440 VLPNRPFGLF 10 79 580.3346179869756 1158.654683040751 2 580.3348388671875 MULTI HCD FTMS 0 0 0 13623 573977.0625 0.30822808554718345 7 -0.1988372802734375 1 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 25.399314129420986 0.2735354021946395 1 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}VS 9 6 72.63 0 0 6.2684 0 0 0 201.06704126529533 201.06704126529533 52.68114684785509 0 0 0 0 1.805462187404089 1.5228787452803376 0 0.4247425010840047 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}VS 6.2684 - 354 + NaN NaN 311353.7 NaN 10631 2991 13623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13625 60.88 NaN 687770 35 0 447430 0.262 -1 0 58 490.28573167543834 489.27845520883835 1 490.285888671875 MULTI HCD FTMS 0 0 0 13623 400306.25 0.381945736500676 5 -0.14313507080078125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 2.4972 0 0 324.20031297426647 0 324.20031297426647 0 7.156818820794937 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.4972 - 8 + NaN NaN 190498.2 NaN 10632 2991 13623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13626 60.883 NaN 739360 35 0 68758 0.261 + 12728 KYAMMFAEL 9 97 560.264004709818 1118.5134564864359 2 560.2644653320312 MULTI HCD FTMS 0 0 0 13623 313898.1875 0.5699013117768749 5 -0.14313507080078125 3 Oxidation (M) _KYAMM(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 63.960520009940105 0.0120409805053046 1 [YK]AM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 9 0 + 52.493 0 0 4.6931 4.6931 83.981 0 0 0 3.2568864632742773 28.626838702691106 3.2568864632742773 6.986381355812981 0 2.122363747448347 0 0 0 + + [YK]AM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};[VP][DV]DD{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[HN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}APDD{M(Oxidation (M))|F}AE{I|L};{[CP]|[EA]}{I|L}PDD{M(Oxidation (M))|F}AE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{M(Oxidation (M))|F}[YV]CK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{M(Oxidation (M))|F}[YV]C{I|L}K;{[QN]|[E{I|L}]|[KN]}K[NG][MD]ANK;{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YV]CK{I|L};{[QN]|[E{I|L}]|[KN]}K[DV][C(Carbamidomethyl (C))N]NK 4.6931;4.0685;3.9737;3.8262;3.2013;3.0419;2.9061;1.3777;1.0759;0.95224 +;-;-;-;-;-;-;-;-;- + 1569 NaN NaN 192212.2 NaN 10633 2991 13623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13627 60.887 NaN 1856600 35 0 368950 0.264 + 33142 YEIITSILKAS 11 67 413.23965808791104 1236.697144863933 3 413.57427978515625 MULTI HCD FTMS 0 0 0 13623 283066.21875 0.4004343537216785 -3 0.08510589599609375 4 Unmodified _YEIITSILKAS_ REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 5.868138319507137 0.39318500527288264 1 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F} 7 -1 36.63 0 0 2.9619 0 0 0 284.17209802799067 284.17209802799067 11.804356545359536 0 0 0 0 0 0.958607314841775 0 0.6989700043360187 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F} 2.9619 - 201 + NaN NaN 377594.7 NaN 10634 2991 13623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13628 60.89 NaN 365980 35 0 60049 0.261 + 34122 YNSWFVLIM 9 74 594.7927727369674 1187.5709925407348 2 594.79345703125 MULTI HCD FTMS 0 0 0 13623 173833.765625 0.33159557061111217 10 -0.2740058898925781 5 Oxidation (M) _YNSWFVLIM(Oxidation (M))_ REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3 65.23502041540118 0.010630085227462206 1 [YN][KG]T{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 10 -1 + 74.9 0 0 6.307 6.307 84.836 0 0 0 8.181277912325342 57.52960906985031 8.181277912325342 2.7815125038364386 0 1.3807196863200843 2 0.3494850021680094 0.6505149978319906 [YN][KG]T{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YN]S[KA]{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YN][KT]G{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YN][KG]{I|L}TA{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YN][KG]T{I|L}{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]S{M(Oxidation (M))|F}{[RE]|[WV]}{I|L}{I|L}{M(Oxidation (M))|F};[YN]S{M(Oxidation (M))|F}{I|L}G[KT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN][W{I|L}][YG]{I|L}{I|L}{M(Oxidation (M))|F};[YN]S[KA]{I|L}{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN][KG]{I|L}T{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.307;6.0727;5.7184;5.2307;5.1153;4.91;4.5267;4.2221;4.2029;4.039 -;-;-;-;-;-;-;-;-;- 822 NaN NaN 148240.3 NaN 10635 2991 13623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13629 60.893 NaN 163110 35 0 18207 0.262 + 841 AWCVFFVL 8 49 492.75398512443957 983.4934173156792 2 493.2550048828125 MULTI HCD FTMS 0 0 0 13623 45659.84765625 0.2999034934875166 9 -0.24785614013671875 6 Unmodified _AWCVFFVL_ REV__ENSG00000128285|ENST00000249016|MCHR1 11.114462752807354 0.5120171699125776 1 V{I|L} 2 -1 25.969 0 0 2.6405 0 0 753.3323870445608 0 753.3323870445608 0 11.989700043360187 0 0 0 0.5 0 0 0 V{I|L} 2.6405 + + 14 NaN NaN 108606.3 NaN 10636 2991 13623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13631 60.898 NaN 955570 35 0 101620 0.327 + 3814 EPEQFVVVM 9 82 547.2662402778759 1092.5179276225517 2 547.2662963867188 MULTI HCD FTMS 0 0 0 13630 351884.1875 0.7411493056316596 1 -0.032855987548828125 1 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 68.08070601005525 0.009709267492204555 1 Q{M(Oxidation (M))|F}VVV{M(Oxidation (M))|F} 6 3 57 0 0 5.2173 0 0 355.1409267454017 0 355.1409267454017 0 38.672137691284405 0 0 0 2 0 0 0 + Q{M(Oxidation (M))|F}VVV{M(Oxidation (M))|F} 5.2173 + + 370 + NaN NaN 242252.6 NaN 10637 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13632 60.903 NaN 2111000 35 0 447780 0.263 + 33143 YEIITSILKAS 11 75 413.23965808791104 1236.697144863933 3 413.2398681640625 MULTI HCD FTMS 0 0 0 13630 391332.1875 0.35103145130663355 -2 0.0490570068359375 2 Unmodified _YEIITSILKAS_ REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 15.538449434065043 0.3216953923945805 1 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F} 7 -1 46.845 0 0 3.7879 0 0 0 284.1728609674438 284.1728609674438 20.514728007639267 0 0 0 0 0.25 1.154901959985743 0 1.1237125054200234 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F} 3.7879 - 190 + NaN NaN 412733 NaN 10638 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13633 60.906 NaN 909510 35 0 96434 0.261 + 12924 KYGPVFSF 8 87 472.7474558152772 943.4803586973544 2 472.7473449707031 MULTI HCD FTMS 0 0 0 13630 375988.6875 0.667591846300996 -1 0.02289581298828125 3 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 100.37149154755038 0.04048324805386337 1 [YK]GPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 0 + 69.928 0 0 7.4117 7.4117 91.921 0 0 0 3.9798523825839283 35.842896387659664 3.9798523825839283 11.53212513775344 0 2.4247425010840047 0 0.4247425010840047 0.6307196863200843 + + [YK]GPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YK]PGV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[{I|L}T]{[DS]|[MA]|[CV]|TT}K;[YK]P{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};[YK]P{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K;[NP]{[MG]|[TS]}K{[VA]|[{I|L}G]}{NN|[MP]|[D{I|L}]|[EV]} 7.4117;6.1894;2.8724;2.8;1.3142;0.43128 +;-;-;-;-;- + 767 NaN NaN 227728.5 NaN 10639 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13634 60.909 NaN 841500 35 0 80090 0.261 + 32602 WLDHWLQHR 9 73 430.8883427065884 NaN 0 430.89093017578125 PEAK HCD FTMS 0 0 0 13630 150783.296875 0.49422233762455897 -25 0.6711158752441406 4 Unmodified _WLDHWLQHR_ ENSG00000115107|ENST00000393110|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3 4.897010918128616 0.2715166107592903 1 W 1 8 5.4846 0 0 0.63791 0 0 122.42457471719679 548.2359411772054 670.6605158944022 0 0 0 0 0 0 0 0 0 + W 0.63791 + + 33 + NaN NaN 218548.2 NaN 10640 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13635 60.913 NaN 427980 35 0 42189 0.261 + 35927 YYTLGDSACTF 11 67 620.7631415492712 1239.5117301653422 2 620.7632446289062 MULTI HCD FTMS 0 0 0 13630 243312.625 0.8364011565232757 -1 0.02289581298828125 5 Unmodified _YYTLGDSACTF_ REV__ENSG00000127578|ENST00000319070|WFIKKN1;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 17.11289562659939 0.30797719109864646 1 G{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 -1 70.206 0 0 5.664 0 0 266.12584120918126 0 266.12584120918126 0 57.4860965642676 0 0 0 2.25 0 1.079689690656103 0.4247425010840047 G{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.664 - 952 NaN NaN 162163.5 NaN 10641 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13636 60.916 NaN 908020 35 0 150690 0.262 -1 0 81 529.317321624483 528.310045157883 1 529.318359375 MULTI HCD FTMS 0 0 0 13630 164003.21875 0.3827717998411178 -2 0.0490570068359375 6 NaN NaN 1 [VP]YV 4 -1 28.416 0 0 5.3787 0 0 0 67.03837694801356 67.03837694801356 2.730012720637376 0 0 0 0 0 1.5228787452803376 0 0 [VP]YV 5.3787 - 40 NaN NaN 236308 NaN 10642 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13637 60.919 NaN 343790 35 0 39212 0.261 + 12858 KYFLWEEKF 9 86 645.3316588060501 1288.6487646789 2 645.3317260742188 MULTI HCD FTMS 0 0 0 13630 55432.7734375 0.22175660961989438 4 -0.1202392578125 7 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 45.602519287354625 0.03962607517953234 1 KY{M(Oxidation (M))|F}{I|L}WEE 7 2 59.338 0 0 4.6047 0 0 0 290.1510103815063 290.1510103815063 43.14047179662451 0 0 0 0 2.2887254899964358 0 0.7302046884880937 0 + KY{M(Oxidation (M))|F}{I|L}WEE 4.6047 + + 225 + NaN NaN 154778.2 NaN 10643 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13638 60.923 NaN 383160 35 0 42330 0.261 + 33609 YISGEFCDCD 10 61 576.2054356689324 1150.3963184046647 2 576.2055053710938 MULTI HCD FTMS 0 0 0 13630 79201.9296875 0.5497285748757561 4 -0.1202392578125 8 Unmodified _YISGEFCDCD_ ENSG00000198542|ENST00000376180|ITGBL1;nc|ENSG00000198542|O95965-2|ITGBL1;nc|ENSG00000198542|O95965-3|ITGBL1 1.844237919475145 0.46554186016084764 1 {I|L} 1 9 5.4846 0 0 0.47675 0 0 163.90707387517097 870.3846147779398 1034.2916886531107 0 0 0 0 0 0 0 0 0 + {I|L} 0.47675 + + 6 + NaN NaN 142489.6 NaN 10644 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13639 60.926 NaN 328130 35 0 44217 0.261 + 1229 AYLPEWKENI 10 75 631.8245541233251 1261.6345553134502 2 632.325927734375 MULTI HCD FTMS 0 0 0 13630 38792.1328125 0.43630173698491476 1 -0.032855987548828125 9 Unmodified _AYLPEWKENI_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 30.7034409873982 0.22608124881558994 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[EP]W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L} 10 0 + 46.432 0 0 3.6803 3.6803 83.105 0 0 0 1.4093282777197658 37.39069071968309 1.4093282777197658 8.010299956639813 0 1.8807196863200843 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[EP]W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[KP]W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NW[KP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L} 3.6803;3.0454;2.9867 +;-;- + 238 NaN NaN 141614.7 NaN 10645 2992 13630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13641 60.931 NaN 5898100 35 0 741650 0.327 + 13296 KYMDVQFDF 9 105 604.7680796891424 1207.5216064450847 2 604.7686157226562 MULTI HCD FTMS 0 0 0 13640 4103379.75 0.775028404532675 5 -0.14308547973632812 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 148.26817274609934 1.0657023776783114E-05 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 89.963 0 0 7.4502 7.4502 85.807 0 0 0 0.2557626122369072 11.408103009885764 0.2557626122369072 0.2557626122369072 0 2.305462187404089 0 1.3539171939081172 1.1307196863200843 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}VDQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVDQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.4502;7.429;7.3419;7.0314;6.7245;6.6876;6.6664;6.6162;6.5794;6.4259 +;-;-;-;-;-;-;-;-;- + 12011 NaN NaN 641080.7 NaN 10646 2993 13640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13642 60.935 NaN 823410 35 0 95732 0.261 + 14609 LFRWAEEL 8 94 532.2820432436615 1062.549533554123 2 532.2679443359375 MULTI HCD FTMS 0 0 0 13640 152427.125 0.30106309417021815 13 -0.3658714294433594 2 Unmodified _LFRWAEEL_ ENSG00000164169|ENST00000322396|PRMT9 19.438996006549623 0.45076845602799126 1 T{M(Oxidation (M))|F}VH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 7 49.769 0 0 4.6839 0 0 165.10666536932473 0 165.10666536932473 0 12.987416456723935 0 0 0 0 0 1.2302046884880937 0 T{M(Oxidation (M))|F}VH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.6839 - 1909 + NaN NaN 210591.6 NaN 10647 2993 13640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13643 60.941 NaN 1164600 35 0 189980 0.261 + 17027 LYIVHPTMF 9 107 568.7940859161241 1135.5736188990481 2 569.3056640625 MULTI HCD FTMS 0 0 0 13640 55747.36328125 0.21188266952959348 16 -0.4410820007324219 3 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 104.79918948944588 0.003791450360204016 1 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.618 0 0 7.0993 7.0993 92.486 0 0 0 53.81197810146999 4.193474691972995 4.193474691972995 16.26795939188456 0 2.1549471895720984 1.5228787452803376 0.6549471895720984 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHPTMY;[Y{I|L}]{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[MD]V{M(Oxidation (M))|F};[Y{I|L}]V{I|L}HPTMY;[Y{I|L}]V{I|L}HPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[MD]V{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HM][{I|L}A]{M(Oxidation (M))|F}{I|L}Y;[YR]Y{M(Oxidation (M))|F}[{I|L}V]{I|L}Y 7.0993;5.6667;5.1366;4.5919;4.3861;3.8559;3.3113;3.0694;1.4186;1.1094 +;-;+;-;-;-;-;-;-;- + 1016 + NaN NaN 247547 NaN 10648 2993 13640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13644 60.944 NaN 294090 35 0 27571 0.261 + -1 SSCRDMDLL 9 73 556.7394519253071 1111.464350917414 2 556.7388916015625 MULTI HCD FTMS 0 0 0 13640 172792.1875 0.8283640007613455 6 -0.16923141479492188 4 Carbamidomethyl (C),Oxidation (M) _SSC(Carbamidomethyl (C))RDM(Oxidation (M))DLL_ REV__ENSG00000244405|ENST00000306376|ETV5;REV__nc|ENSG00000244405|P41161-2|ETV5 17.11289562659939 0.2125047172822487 1 D{I|L}{I|L} 3 -1 30.534 0 0 2.7472 0 0 752.258592674025 0 752.258592674025 0 9.503187623076954 0 0 0 0.2742275032520141 0 0.6989700043360187 0 D{I|L}{I|L} 2.7472 + + 128 NaN NaN 126498.4 NaN 10649 2993 13640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13645 60.948 NaN 233810 35 0 15191 0.261 -1 CLRHRETI 8 66 542.7893787699389 1083.5642046066778 2 542.7874755859375 MULTI HCD FTMS 0 0 0 13640 98021.6953125 0.9064246399305537 -1 0.032855987548828125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))LRHRETI_ ENSG00000188649|ENST00000646931|CC2D2B 19.438996006549623 0.45076845602799126 1 Q{I|L} 2 -1 17.307 0 0 1.5972 0 0 824.4046498029312 0 824.4046498029312 0 1.822581265925436 0 0 0 0 0 0 0.5 Q{I|L} 1.5972 - 252 NaN NaN 118541.5 NaN 10650 2993 13640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13646 60.951 NaN 269330 35 0 23863 0.261 -1 QYLMDNPTF 9 62 572.7532510594086 1143.4919491856172 2 572.7523193359375 MULTI HCD FTMS 0 0 0 13640 117414.1953125 0.8293018058110545 8 -0.21825408935546875 6 Oxidation (M) _QYLM(Oxidation (M))DNPTF_ ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A 36.506200033944 0.08138327636155518 1 PT{M(Oxidation (M))|F} 3 -1 33.672 0 0 2.9447 0 0 780.3118719119121 0 780.3118719119121 0 21.989700043360187 0 0 0 1 0 0.3494850021680094 0 PT{M(Oxidation (M))|F} 2.9447 + + 109 NaN NaN 119238.3 NaN 10651 2993 13640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13648 60.956 NaN 9554200 35 0 1160400 0.327 + 27060 SYMGHFDLL 9 116 549.7497688734081 1097.4849848136162 2 549.7503051757812 MULTI HCD FTMS 0 0 0 13647 7560871.5 0.7299381381154089 8 -0.222808837890625 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 196.64828556020333 2.142729284121474E-17 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 99.853 0 0 9.0983 9.0983 96.867 0 0 0 42.530586141042534 9.889917747712644 9.889917747712644 27.972287753157516 0 2.579689690656103 2 2.0233623702246373 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};[Y{M(Oxidation (M))|F}]SGH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}G{I|L}{I|L}[HD]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}HGSY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}HGYS{I|L} 9.0983;6.5496;5.5182;5.2287;4.0715;4.0638;3.9098;3.7116;3.6368;3.5426 +;+;-;-;-;-;-;-;-;- + 6332 + NaN NaN 687473.9 NaN 10652 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13649 60.96 NaN 685110 35 0 190460 0.263 + -1 REEQLFCLR 9 68 417.5484867073669 1249.6236307223007 3 417.548583984375 MULTI HCD FTMS 0 0 0 13647 116034.5234375 0.1874963390516841 8 -0.222808837890625 2 Carbamidomethyl (C) _REEQLFC(Carbamidomethyl (C))LR_ REV__ENSG00000142606|ENST00000378412|MMEL1;REV__nc|ENSG00000142606|Q495T6-2|MMEL1;REV__nc|ENSG00000142606|Q495T6-3|MMEL1 4.5288652416199255 0.31668488241058723 1 {[RE]|[WV]}D 3 -1 20.686 0 0 1.6554 0 0 0 846.4261264100538 846.4261264100538 3.6966623150499345 0 0 0 0 0 1.5228787452803376 0 0 {[RE]|[WV]}D 1.6554 - 46 NaN NaN 189106.3 NaN 10653 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13650 60.964 NaN 743030 35 0 66835 0.261 + 11788 KEFELFHNQV 10 69 430.8883427065884 NaN 0 430.8887634277344 PEAK HCD FTMS 0 0 0 13647 156195.890625 0.5119631934831139 -23 0.6307792663574219 3 Unmodified _KEFELFHNQV_ ENSG00000257335|ENST00000475668|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM 2.6312355333042263 0.33793231609310104 1 W 1 10 5.4846 0 0 0.63791 0 0 122.42481974984942 548.2366795780899 670.6614993279394 0 0 0 0 0 0 0 0 0 W 0.63791 - 10 + NaN NaN 197733.3 NaN 10654 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13651 60.967 NaN 330570 35 0 60825 0.261 + 34123 YNSWFVLIM 9 70 594.7927727369674 1187.5709925407348 2 594.7910766601562 MULTI HCD FTMS 0 0 0 13647 185115.328125 0.35311564837691545 13 -0.3605384826660156 4 Oxidation (M) _YNSWFVLIM(Oxidation (M))_ REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3 47.748688679222035 0.03472022231463587 1 [YN]S{M(Oxidation (M))|F}{I|L}{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 9 -1 + 57.214 0 0 4.8177 4.8177 83.473 0 0 0 9.729524540212324 4.7564996996458575 4.7564996996458575 5.211440694835829 0 1.8851518780601921 1.5228787452803376 0 0 [YN]S{M(Oxidation (M))|F}{I|L}{[RE]|[WV]}{I|L}{M(Oxidation (M))|F};[YN]S{M(Oxidation (M))|F}{[RE]|[WV]}{I|L}{I|L}{M(Oxidation (M))|F};[YN]S{M(Oxidation (M))|F}P{[MG]|[TS]}{I|L}{I|L}{M(Oxidation (M))|F};[YN][KG]T{I|L}{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN][KP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}{M(Oxidation (M))|F};[YN]S{M(Oxidation (M))|F}{I|L}[KA]S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}T{I|L}{M(Oxidation (M))|F}[QA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}T{I|L}{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}GVE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}T[PS]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4.8177;4.3789;4.2737;4.1418;3.6302;3.5236;3.5151;3.2579;3.2353;3.1096 -;-;-;-;-;-;-;-;-;- 963 + NaN NaN 134325.8 NaN 10655 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13652 60.971 NaN 488070 35 0 109100 0.261 + 34515 YPFSSSNDEEL 11 78 644.2723855789125 1286.5302182246248 2 644.2717895507812 MULTI HCD FTMS 0 0 0 13647 161199 0.5544891281447115 -4 0.10681533813476562 5 Unmodified _YPFSSSNDEEL_ ENSG00000158092|ENST00000481752|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion 57.107585691075435 0.0522316747233038 1 SSSNDEE{I|L} 8 3 68.868 0 0 5.353 0 0 407.1837970165842 0 407.1837970165842 0 60.79602875468183 0 0 0 1.524227503252014 0 0.805462187404089 0.4247425010840047 + SSSNDEE{I|L} 5.353 + + 294 NaN NaN 166407.7 NaN 10656 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13653 60.974 NaN 558410 35 0 28827 0.262 -1 LPAAGVGDMVM 11 107 538.7592438788679 1075.5039348245357 2 538.759521484375 MULTI HCD FTMS 0 0 0 13647 102702.9765625 0.24450082515892949 19 -0.5336952209472656 6 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 17.11289562659939 0.30797719109864646 1 SV{M(Oxidation (M))|F} 3 -1 31.727 0 0 2.9499 0 0 724.3442860334 0 724.3442860334 0 14.252509456924827 0 0 0 0.8494850021680094 0 0.3054621874040891 0 SV{M(Oxidation (M))|F} 2.9499 - 803 NaN NaN 163001.2 NaN 10657 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13654 60.977 NaN 340850 35 0 30247 0.261 + 4869 FAEGFVRAL 9 77 505.27711562888305 1008.5396783245661 2 505.769775390625 MULTI HCD FTMS 0 0 0 13647 17683.416015625 0.8230871259297778 -1 0.02490234375 7 Unmodified _FAEGFVRAL_ ENSG00000177606|ENST00000371222|JUN 39.94969957227396 0.06557568441294001 1 V{M(Oxidation (M))|F}GE{[CP]|[EA]} 6 7 31.674 0 0 3.1406 0 0 358.2330534679679 0 358.2330534679679 0 -1.6785784696734396 -1.6785784696734396 0 0 1.1307196863200843 0 0.2742275032520141 0 V{M(Oxidation (M))|F}GE{[CP]|[EA]} 3.1406 - 124 NaN NaN 132943.7 NaN 10658 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13655 60.981 NaN 235850 35 0 22447 0.261 + 13693 KYPHYFPLL 9 81 589.3237730376378 1176.6329931420755 2 589.3235473632812 MULTI HCD FTMS 0 0 0 13647 63295.05859375 0.12187275788004753 14 -0.396636962890625 8 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 39.957323273324995 0.06554068735427583 1 Y{M(Oxidation (M))|F}P{I|L}{I|L} 5 4 41.938 0 0 3.5643 0 0 525.270799705275 0 525.270799705275 0 23.182503180159344 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F}P{I|L}{I|L} 3.5643 + + 212 NaN NaN 128104.2 NaN 10659 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13656 60.984 NaN 136410 35 0 20229 0.264 + -1 LMCIYQTARF 10 50 434.8822326184507 1301.6248684555521 3 434.8822326660156 MULTI HCD FTMS 0 0 0 13647 48364.52734375 0.5479280171862903 8 -0.222808837890625 9 Carbamidomethyl (C) _LMC(Carbamidomethyl (C))IYQTARF_ REV__PEX11A|p.T24I|1|0.53|ENSG00000166821|chr15:89686532-89686532|G/A|missense_variant 1.9063754702782614 0.46521295622613185 1 ETR{M(Oxidation (M))|F} 4 -1 24.641 0 0 1.8931 0 0 750.3653602541834 0 750.3653602541834 0 24.552593986562812 0 0 0 0 0 0.3494850021680094 0 ETR{M(Oxidation (M))|F} 1.8931 - 26 + NaN NaN 108550.7 NaN 10660 2994 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13658 60.989 NaN 585530 35 0 64434 0.326 + 16815 LYECTGQFDF 10 74 611.7578938075267 1221.5012346818532 2 611.7579956054688 MULTI HCD FTMS 0 0 0 13657 259735.234375 0.49835034977945003 8 -0.21271133422851562 1 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 41.95555342248728 0.12843670176738353 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 67.524 0 0 5.5279 5.5279 85.603 0 0 0 5.920146062458258 45.11561899423569 5.920146062458258 7.491056375664442 0 2.274227503252014 0 0.3807196863200844 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}QE{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}E{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QE[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[AG]E{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YV][CS]DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.5279;4.9147;4.8097;4.733;4.5661;4.466;4.0883;4.0559;3.9468;3.9057 -;-;-;-;-;-;-;-;-;- 930 NaN NaN 180389.5 NaN 10661 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13659 60.993 NaN 563340 35 0 209330 0.264 -1 0 55 427.3025079880766 852.5904630429533 2 427.3025817871094 MULTI HCD FTMS 0 0 0 13657 165137 0.16448656870528658 27 -0.5885772705078125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.42 0 0 1.3394 0 0 687.511237434358 0 687.511237434358 0 4.966333086705159 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3394 - 37 + NaN NaN 165041.5 NaN 10662 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13660 60.997 NaN 469800 35 0 117060 0.261 + 4592 EYLRQIFRL 9 71 619.3563045932855 1236.6980562533709 2 619.3558959960938 MULTI HCD FTMS 0 0 0 13657 287554.4375 1 0 0 3 Unmodified _EYLRQIFRL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 59.05245873256422 0.018907022117377846 1 {I|L}E[YR]Q{I|L}{M(Oxidation (M))|F}R{I|L} 9 2 + 57.725 0 0 4.6677 4.6677 84.687 0 0 0 9.018637558036673 8.875780960939544 8.875780960939544 8.875780960939544 0 1.579689690656103 0 0.4247425010840047 0.4247425010840047 {I|L}E[YR]Q{I|L}{M(Oxidation (M))|F}R{I|L};[YE][R{I|L}]Q{I|L}{M(Oxidation (M))|F}R{I|L};E{I|L}[YR]Q{I|L}{M(Oxidation (M))|F}R{I|L};{I|L}E[YR][AG]{I|L}{M(Oxidation (M))|F}R{I|L};{I|L}E[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}];E{I|L}[YR][AG]{I|L}{M(Oxidation (M))|F}R{I|L};E{I|L}[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}];{I|L}E[YR][AG]{I|L}{I|L}[R{M(Oxidation (M))|F}];E{I|L}[YR][AG]{I|L}{I|L}[R{M(Oxidation (M))|F}] 4.6677;3.95;3.9384;3.9231;3.8163;3.1938;3.0871;3.0718;2.3425 -;+;-;-;-;-;-;-;- + 294 + NaN NaN 154692.2 NaN 10663 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13661 61 NaN 624460 35 0 118760 0.261 + 5714 FPAGYMYPSM 10 84 598.243611247786 1194.472669562372 2 598.2440185546875 MULTI HCD FTMS 0 0 0 13657 262605 0.7284436972598757 -25 0.6899604797363281 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 117.59872219059416 4.1811813134037123E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 0 + 67.701 0 0 5.6679 5.6679 84.693 0 0 0 4.27948461635836 56.01850649356642 4.27948461635836 4.758950235313861 0 2.274227503252014 0 0.7614393726401688 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]} 5.6679;5.2694;4.962;4.3927;4.1001;4.0931;3.6997;2.5629;1.1006 +;-;-;-;-;-;-;-;- + 616 NaN NaN 173428.1 NaN 10664 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13662 61.004 NaN 504290 35 0 19338 0.261 + 12738 KYATFALQLK 10 102 591.8471525175358 1181.6797521018716 2 591.8300170898438 MULTI HCD FTMS 0 0 0 13657 22655.439453125 0.1760681678978117 8 -0.21271133422851562 5 Unmodified _KYATFALQLK_ REV__nc|nan|Q9HD87|C6orf50 7.608950283845883 0.4350283211712914 1 SW 2 -1 20.573 0 0 1.741 0 0 890.5578914533404 0 890.5578914533404 0 2.790163834110203 0 0 0 0 0 0.2614393726401688 0 SW 1.741 - 845 + NaN NaN 165358.3 NaN 10665 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13663 61.007 NaN 338520 35 0 36576 0.261 + 19411 NPIGFVEKL 9 77 508.7922790855909 1015.5700052379818 2 508.7922058105469 MULTI HCD FTMS 0 0 0 13657 113362.6015625 0.44170128996849123 -4 0.1136016845703125 6 Unmodified _NPIGFVEKL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 128.57297698046145 0.0006915168155602875 1 [NP]{I|L}G{M(Oxidation (M))|F}VEK{I|L} 9 0 + 86.071 0 0 8.4751 8.4751 89.934 0 0 0 5.668563304579024 5.668563304579024 5.668563304579024 5.668563304579024 0 2.5994850021680094 0 0 2.3912939259328767 + + [NP]{I|L}G{M(Oxidation (M))|F}VEK{I|L};NP{I|L}G{M(Oxidation (M))|F}VEK{I|L} 8.4751;7.917 +;+ + 194 NaN NaN 133879.2 NaN 10666 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13664 61.01 NaN 213000 35 0 10576 0.261 + -1 SKWNNRWIM 9 68 625.8080112008108 1249.6014694684216 2 626.310546875 MULTI HCD FTMS 0 0 0 13657 48664.8671875 0.127122496305774 -10 0.27725982666015625 7 Oxidation (M) _SKWNNRWIM(Oxidation (M))_ REV__nc|ENSG00000111860|Q5SZL2-2|CEP85L;REV__nc|ENSG00000111860|Q5SZL2-4|CEP85L 13.90604991867851 0.24021115267848145 1 {I|L}W[W{I|L}][HM]{[TV]|[{I|L}S]} 8 -1 22.637 0 0 1.8115 0 0 165.05698333676838 0 165.05698333676838 0 9.449237304209886 0 0 0 0.5 0 1.274227503252014 0 {I|L}W[W{I|L}][HM]{[TV]|[{I|L}S]} 1.8115 - 70 + NaN NaN 123385.1 NaN 10667 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13665 61.013 NaN 259140 35 0 14168 0.261 -1 MLLADQGQSW 10 85 582.7701204618585 NaN 0 582.768310546875 PEAK HCD FTMS 0 0 0 13657 35398.44921875 0.1325635201697187 -20 0.5456733703613281 8 Oxidation (M) _M(Oxidation (M))LLADQGQSW_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000489040.1_1_11:67351618-67352251:+|nuORF;ENST00000494593.1_1_11:67351834-67352083:+|nuORF 18.1463463914782 0.29565035219289926 1 ST{I|L} 3 -1 14.781 0 0 1.2704 0 0 236.08084005643724 623.2691744440061 859.3500145004434 0 0 0 0 0 0.6989700043360187 0 0 0 ST{I|L} 1.2704 - 79 + NaN NaN 140838.8 NaN 10668 2995 13657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13667 61.018 NaN 4376900 35 0 796900 0.327 + 24344 RYIDRIHIFF 10 79 460.59069929921907 1378.7502684978572 3 460.5910339355469 MULTI HCD FTMS 0 0 0 13666 1779157.625 0.25773244729899975 10 -0.2784881591796875 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 39.922945255915025 0.1460754433722493 1 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 72.186 0 0 5.2356 0 0 547.2760027207718 0 547.2760027207718 0 62.72160958700539 0 0 0 2.7059771852360797 0 0 0.6989700043360187 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2356 + + 348 NaN NaN 683097.4 NaN 10669 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13668 61.023 NaN 1159800 35 0 124460 0.261 + 29057 TYFRFQEEI 9 92 616.8011937070484 1231.5878344808966 2 616.8008422851562 MULTI HCD FTMS 0 0 0 13666 430342.0625 0.3183207963159615 8 -0.21937179565429688 2 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 117.83759599426817 0.001662893820975323 1 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 90.614 0 0 7.3575 7.3575 90.422 0 0 0 10.90743145471194 10.90743145471194 10.90743145471194 9.208187539523749 0 2.329689690656103 2 0.2742275032520141 1.0752574989159953 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}REEQ{M(Oxidation (M))|F}{I|L};[YT]{M(Oxidation (M))|F}REE[AG]{M(Oxidation (M))|F}{I|L};[YT]{M(Oxidation (M))|F}[TA]{[QN]|[E{I|L}]|[KN]}Q{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}ERRH{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NQ{M(Oxidation (M))|F}[TA]TY{I|L};{[QN]|[E{I|L}]|[KN]}EQYYQ{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}E[AG]YYQ{M(Oxidation (M))|F}{I|L} 7.3575;6.6098;3.5731;3.5017;2.754;2.1823;1.7522;1.7463;1.1297;0.38205 +;-;-;-;-;-;-;-;-;- + 1205 NaN NaN 260065 NaN 10670 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13669 61.026 NaN 859210 35 0 375070 0.261 + 30441 VLPNRPFGLF 10 74 580.3346179869756 1158.654683040751 2 580.3348999023438 MULTI HCD FTMS 0 0 0 13666 287498.4375 0.15438786456459064 12 -0.3341560363769531 3 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 19.256988751693697 0.33098864134661865 1 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}VS 9 6 72.317 0 0 6.2415 0 0 0 201.06650720767814 201.06650720767814 67.7132064533734 0 0 0 0 1.4247425010840047 2 0 0.4247425010840047 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}VS 6.2415 - 282 + NaN NaN 214857 NaN 10671 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13670 61.03 NaN 337180 35 0 28803 0.261 -1 0 66 559.3192936844513 558.3120172178512 1 559.3160400390625 MULTI HCD FTMS 0 0 0 13666 127099.2265625 0.5292269825947518 2 -0.05570220947265625 4 NaN NaN 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV 4 -1 33.188 0 0 5.9443 0 0 0 97.03522558792108 97.03522558792108 15.02697515943353 0 0 0 0 0 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV 5.9443 - 49 NaN NaN 130966.4 NaN 10672 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13671 61.033 NaN 347460 35 0 30921 0.261 + 27836 TCSTYYIQDF 10 63 620.7631415492712 1239.5117301653422 2 620.7632446289062 MULTI HCD FTMS 0 0 0 13666 163099.140625 0.5606626859033821 3 -0.08184814453125 5 Unmodified _TCSTYYIQDF_ REV__ENSG00000145794|ENST00000503335|MEGF10;REV__nc|ENSG00000145794|Q96KG7-2|MEGF10 18.1463463914782 0.3413772152514074 1 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 67.709 0 0 5.4625 0 0 280.1056385724625 0 280.1056385724625 0 57.25132007365232 0 0 0 0 0 1.0994850021680094 0.6237125054200234 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.4625 - 274 NaN NaN 133564.9 NaN 10673 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13672 61.036 NaN 402980 35 0 74297 0.264 + 4552 EYLKNIIYRF 10 66 453.5869004749393 1357.7388720250178 3 453.5870056152344 MULTI HCD FTMS 0 0 0 13666 67336.640625 0.5081891356558967 -2 0.062480926513671875 6 Unmodified _EYLKNIIYRF_ ENSG00000179562|ENST00000321407|GCC1 14.957161354070239 0.3712077760547347 1 {I|L}YR{M(Oxidation (M))|F} 4 6 30.42 0 0 2.2405 0 0 760.4114956233988 0 760.4114956233988 0 9.361818737241734 0 0 0 0.3252574989159953 0 0 0 + {I|L}YR{M(Oxidation (M))|F} 2.2405 + + 85 + NaN NaN 148863.8 NaN 10674 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13673 61.04 NaN 371330 35 0 60847 0.261 + 5657 FNQPKGLLRF 10 58 407.23611191533155 1218.6865063461946 3 407.2361145019531 MULTI HCD FTMS 0 0 0 13666 73386.03125 0.8545035263894739 1 -0.02950286865234375 7 Unmodified _FNQPKGLLRF_ REV__ENST00000578387.1_1_4:184019140-184020019:-|nuORF 5.40270961882225 0.4467063037482923 1 RQ{I|L}[R{I|L}]{M(Oxidation (M))|F} 6 -1 39.359 0 0 3.2296 0 0 387.1796583881216 0 387.1796583881216 0 18.812281309285623 0 0 0 1.8494850021680094 0 0 0.3494850021680094 RQ{I|L}[R{I|L}]{M(Oxidation (M))|F} 3.2296 - 86 + NaN NaN 134157.3 NaN 10675 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13674 61.043 NaN 126030 35 0 16555 0.261 + -1 CGRGFCCPCCV 11 51 631.2241239645217 1260.4336949958433 2 631.2243041992188 MULTI HCD FTMS 0 0 0 13666 66676.125 0.41815809523342895 10 -0.2784881591796875 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGFCCPCC(Carbamidomethyl (C))V_ REV__ENSG00000038210|ENST00000264864|PI4K2B 1.4819007175156935 0.4124215533673021 1 [YN]A 3 -1 25.686 0 0 2.0379 0 0 0 909.2672880957058 909.2672880957058 5.8534811358448735 0 0 0 0 0 1.5228787452803376 0 0 [YN]A 2.0379 - 63 NaN NaN 113293.8 NaN 10676 2996 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13676 61.048 NaN 2026700 35 0 430930 0.327 + 33144 YEIITSILKAS 11 60 413.23965808791104 1236.697144863933 3 413.2398376464844 MULTI HCD FTMS 0 0 0 13675 862043.5 0.7732672919843834 3 -0.07521820068359375 1 Unmodified _YEIITSILKAS_ REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 11.631370582801994 0.35573789852458537 1 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F}R{I|L} 9 -1 [YE] + + 41.904 4.4981 1.5399 3.3883 3.3883 59.524 0 0 0 0 12.38540217437654 0 0 0 0.2742275032520141 0 0 1.1237125054200234 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F}R{I|L} 3.3883 - 247 + NaN NaN 387817.7 NaN 10677 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13677 61.052 NaN 551550 35 0 62171 0.261 + 12925 KYGPVFSF 8 74 472.7474558152772 943.4803586973544 2 472.7473449707031 MULTI HCD FTMS 0 0 0 13675 274978.4375 0.4882417181330436 4 -0.10136795043945312 2 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 92.8221339359638 0.028586293957039193 1 {[HG]|PP}PG[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 3 + 69.632 0 0 7.3803 7.3803 91.471 0 0 0 3.2568864632742844 10.003859178250778 3.2568864632742844 10.003859178250778 0 2.3494850021680094 0 1.5044321917401078 0 {[HG]|PP}PG[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YK]P[VG]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[{I|L}T]{[DS]|[MA]|[CV]|TT}K;[{M(Oxidation (M))|F}V]AA[VG]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[VP]GYK;[{I|L}P]Q{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT}K 7.3803;6.32;5.0492;3.6734;2.844;2.7757;2.3086;1.4426 -;+;-;-;-;-;-;- + 485 + NaN NaN 180965.6 NaN 10678 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13678 61.056 NaN 1417600 35 0 293190 0.261 + 17028 LYIVHPTMF 9 96 568.7940859161241 1135.5736188990481 2 569.3055419921875 MULTI HCD FTMS 0 0 0 13675 28573.875 0.10860260570998542 20 -0.4832649230957031 3 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 89.42679046578446 0.004540987215715461 1 {I|L}Y{I|L}VH[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 54.553 0 0 4.804 4.804 83.446 0 0 0 10.563565498376448 2.6760624017703094 2.6760624017703094 5.177287669604311 0 1.774227503252014 1.5228787452803376 0.7302046884880937 0 + + {I|L}Y{I|L}VH[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[TP]MY;[Y{I|L}]V{I|L}H[TP]MY;[Y{I|L}]{I|L}VH[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]C(Carbamidomethyl (C))VK{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]{I|L}[AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.804;4.3481;3.4439;3.4248;2.5206;1.8605;1.8202;1.4932;1.0946;1.0496 +;-;-;+;-;-;-;-;-;- + 925 + NaN NaN 316667.3 NaN 10679 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13679 61.059 NaN 501670 35 0 90446 0.261 + 12729 KYAMMFAEL 9 95 560.264004709818 1118.5134564864359 2 560.2642822265625 MULTI HCD FTMS 0 0 0 13675 114431.1015625 0.20775664685397885 11 -0.3046531677246094 4 Oxidation (M) _KYAMM(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 49.55428908609986 0.03219431099695407 1 M{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 6 3 51.674 0 0 4.6199 0 0 362.1950855939469 0 362.1950855939469 0 30.005387653900414 0 0 0 1.9436726795685342 0 0 0 + M{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 4.6199 + + 1005 NaN NaN 161594.2 NaN 10680 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13680 61.063 NaN 208330 35 0 122050 0.261 -1 0 46 490.28573167543834 489.27845520883835 1 490.2858581542969 MULTI HCD FTMS 0 0 0 13675 110771.625 0.10569095509750771 11 -0.3046531677246094 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 125993.2 NaN 10681 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13681 61.066 NaN 220490 35 0 23616 0.261 + 7499 FWGFLFGLLFF 11 44 465.25024285331233 1392.728899160137 3 465.5849609375 MULTI HCD FTMS 0 0 0 13675 83963.9140625 0.21315520639562743 10 -0.2685546875 6 Unmodified _FWGFLFGLLFF_ REV__ENSG00000086205|ENST00000256999|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1;REV__nc|ENSG00000086205|Q04609-4|FOLH1;REV__nc|ENSG00000086205|Q04609-8|FOLH1 8.444304893310646 0.381886813817475 1 R{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.0112 0 0 811.3886585919937 0 811.3886585919937 0 41.938200260161125 0 0 0 1 0 0 0 R{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0112 - 19 NaN NaN 114191.3 NaN 10682 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13682 61.069 NaN 243550 35 0 23495 0.261 + -1 WCLFACPTF 9 59 572.7532510594086 1143.4919491856172 2 572.7546997070312 MULTI HCD FTMS 0 0 0 13675 62611.96875 0.44223118517793414 12 -0.32419586181640625 7 Carbamidomethyl (C) _WC(Carbamidomethyl (C))LFACPTF_ REV__ENSG00000140497|ENST00000268099|SCAMP2;REV__ENST00000563829.5_1_15:75137426-75144629:-|nuORF;REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF 18.13498045792455 0.20367413111508956 1 PT{M(Oxidation (M))|F} 3 -1 33.015 0 0 2.8872 0 0 780.309553784348 0 780.309553784348 0 23.873409493950675 0 0 0 1 0 0.3807196863200844 0 PT{M(Oxidation (M))|F} 2.8872 + + 65 NaN NaN 118892 NaN 10683 2997 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13684 61.074 NaN 3643200 35 0 478370 0.327 + 13297 KYMDVQFDF 9 105 604.7680796891424 1207.5216064450847 2 604.7685546875 MULTI HCD FTMS 0 0 0 13683 2819981.5 0.5326257611805633 10 -0.2784538269042969 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 160.6895995991744 8.89223804155775E-09 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 93.171 0 0 7.7159 7.7159 88.246 0 0 0 3.65279269351241 44.94268689616572 3.65279269351241 4.599009323677095 0 2.305462187404089 0 1.6153565665482859 1.110924374808178 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 7.7159;7.335;7.3105;7.2796;6.9533;6.5724;6.5633;6.5479;6.517;6.4164 +;-;-;-;-;-;-;-;-;- + 10208 NaN NaN 638294.3 NaN 10684 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13685 61.078 NaN 738360 35 0 126460 0.261 -1 0 77 529.317321624483 528.310045157883 1 529.3184814453125 MULTI HCD FTMS 0 0 0 13683 371870.71875 0.8679196994366771 4 -0.10462570190429688 2 NaN NaN 1 [VP]YV 4 -1 27.167 0 0 5.1422 0 0 0 67.0382564969972 67.0382564969972 -0.28028723600243666 0 -0.28028723600243666 0 0 0 1.3979400086720375 0 0 [VP]YV 5.1422 - 26 NaN NaN 205109.5 NaN 10685 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13686 61.082 NaN 623930 35 0 30193 0.261 + 21934 QEDLRTFSW 9 93 591.2829617742384 1180.5513706152767 2 591.2832641601562 MULTI HCD FTMS 0 0 0 13683 296603.34375 0.998069752839822 -1 0.0261993408203125 3 Unmodified _QEDLRTFSW_ ENSG00000145907|ENST00000356245|G3BP1 107.09958533191995 0.0034159042678574016 1 PD{I|L}RT{M(Oxidation (M))|F}SW 8 2 65.941 0 0 5.5856 0 0 160.04844615507824 0 160.04844615507824 0 40.19753725910341 0 0 0 1.6549471895720984 0 0.6307196863200843 0 PD{I|L}RT{M(Oxidation (M))|F}SW 5.5856 - 2242 + NaN NaN 177731.8 NaN 10686 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13687 61.085 NaN 349010 35 0 33723 0.261 + 14291 LDDSKELQRF 10 83 625.820268642639 1249.625984352078 2 625.807861328125 MULTI HCD FTMS 0 0 0 13683 20682.193359375 0.11998786170914713 13 -0.3569183349609375 4 Unmodified _LDDSKELQRF_ ENSG00000167770|ENST00000538426|OTUB1 8.155526934196011 0.43213520406898465 1 QM{M(Oxidation (M))|F}KD{I|L}S{I|L} 8 8 42.018 0 0 3.3625 0 0 269.1019459455094 0 269.1019459455094 0 29.93997205262631 0 0 0 0 0 0.3807196863200844 0.23965182871044374 QM{M(Oxidation (M))|F}KD{I|L}S{I|L} 3.3625 - 157 NaN NaN 135320.8 NaN 10687 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13688 61.089 NaN 277770 35 0 26135 0.261 + 16430 LSMGSASYYDF 11 65 620.7631415492712 1239.5117301653422 2 620.763427734375 MULTI HCD FTMS 0 0 0 13683 170458.515625 0.585960961162582 5 -0.12747573852539062 5 Unmodified _LSMGSASYYDF_ REV__ENSG00000157103|ENST00000287766|SLC6A1 8.745405648335112 0.3805662881914433 1 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 57.779 0 0 4.6614 0 0 280.1054859845719 0 280.1054859845719 0 52.09260442984956 0 0 0 0 0 0.3807196863200844 0.3494850021680094 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6614 - 289 NaN NaN 137793.4 NaN 10688 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13689 61.092 NaN 359800 35 0 47142 0.262 + 28603 TQIHGLFTF 9 69 532.2820432436615 1062.549533554123 2 532.2684936523438 MULTI HCD FTMS 0 0 0 13683 90019.796875 0.1778006282265183 18 -0.4479331970214844 6 Unmodified _TQIHGLFTF_ REV__ENSG00000112159|ENST00000369393|MDN1;REV__MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant 12.531546534597751 0.2520865569484384 1 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 -1 33.945 0 0 3.1947 0 0 165.10849554939642 0 165.10849554939642 0 -10.617968113107068 -10.617968113107068 0 0 0 0 0.6989700043360187 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.1947 - 241 + NaN NaN 137205.4 NaN 10689 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13690 61.095 NaN 230030 35 0 22098 0.261 + 33610 YISGEFCDCD 10 62 576.2054356689324 1150.3963184046647 2 576.2058715820312 MULTI HCD FTMS 0 0 0 13683 87542.6640625 0.6076203464459332 10 -0.2784538269042969 7 Unmodified _YISGEFCDCD_ ENSG00000198542|ENST00000376180|ITGBL1;nc|ENSG00000198542|O95965-2|ITGBL1;nc|ENSG00000198542|O95965-3|ITGBL1 1.844237919475145 0.46554186016084764 1 [Y{I|L}][QP]WW{I|L} 7 8 10.959 0 0 0.95263 0 0 0 160.88549011780847 160.88549011780847 6.354925662989146 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}][QP]WW{I|L} 0.95263 - 12 NaN NaN 114293.1 NaN 10690 2998 13683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13692 61.1 NaN 6638900 35 0 767490 0.326 + 27061 SYMGHFDLL 9 113 549.7497688734081 1097.4849848136162 2 549.7503051757812 MULTI HCD FTMS 0 0 0 13691 4387620 0.42358756838519607 13 -0.36669921875 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 180.00974506902125 1.0762292318080308E-12 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 101.64 0 0 9.2615 9.2615 94.389 0 0 0 52.279659778248615 9.889917747712644 9.889917747712644 10.607346925073955 0 2.6549471895720984 2 2.0021934810768762 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}HG{M(Oxidation (M))|F}SY;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]YS{I|L} 9.2615;8.295;6.3683;3.7649;3.6651;3.4567;3.202;3.1694;2.9046;2.8483 +;-;+;-;-;-;-;-;-;- + 3266 + NaN NaN 617665.9 NaN 10691 2999 13691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13693 61.105 NaN 257980 35 0 45834 0.261 + 23160 RFIPYTEEF 9 56 601.2983395546165 1200.582126176033 2 601.2986450195312 MULTI HCD FTMS 0 0 0 13691 124658.109375 0.7789857616063779 -2 0.05234527587890625 2 Unmodified _RFIPYTEEF_ ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP 51.629811660486645 0.02929079705179888 1 TEE{M(Oxidation (M))|F} 4 5 44.725 0 0 3.7253 0 0 676.3709993206196 0 676.3709993206196 0 29.776296993281406 0 0 0 1.1549471895720984 0 0.4247425010840047 0 + TEE{M(Oxidation (M))|F} 3.7253 + + 72 NaN NaN 128851.7 NaN 10692 2999 13691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13694 61.108 NaN 446040 35 0 117760 0.264 -1 CLKDNGQIRF 10 52 417.5484867073669 1249.6236307223007 3 417.5488586425781 MULTI HCD FTMS 0 0 0 13691 65586.3203125 0.10597876033927549 13 -0.36669921875 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LKDNGQIRF_ ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9 1.7422754331352037 0.46608156381052757 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3596 0 0 1084.544572960385 0 1084.544572960385 0 6.532125137753438 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3596 + + 29 + NaN NaN 166572.3 NaN 10693 2999 13691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13695 61.112 NaN 313320 35 0 19153 0.261 + 3508 EIAHAYYDM 9 72 556.7394519253071 1111.464350917414 2 556.7395629882812 MULTI HCD FTMS 0 0 0 13691 65302.796875 0.3130609483156204 12 -0.33077239990234375 4 Unmodified _EIAHAYYDM_ ENSG00000198954|ENST00000361983|KIFBP 15.847184025352803 0.2234401846867398 1 S{I|L}P{I|L}{I|L}DG{M(Oxidation (M))|F} 8 7 32.626 0 0 2.9354 0 0 250.98868605624563 0 250.98868605624563 0 14.042294029923 0 0 0 0 0 0.75 0 S{I|L}P{I|L}{I|L}DG{M(Oxidation (M))|F} 2.9354 - 337 + NaN NaN 141106 NaN 10694 2999 13691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13696 61.115 NaN 223910 35 0 19961 0.261 -1 QYLMDNPTF 9 56 572.7532510594086 1143.4919491856172 2 572.7527465820312 MULTI HCD FTMS 0 0 0 13691 65327.609375 0.4614118785195901 14 -0.38936614990234375 5 Oxidation (M) _QYLM(Oxidation (M))DNPTF_ ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.923 0 0 978.4125862479203 0 978.4125862479203 0 6.214693850147908 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.923 + + 39 + NaN NaN 119423.9 NaN 10695 2999 13691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13697 61.118 NaN 98771 35 0 7852.8 0.262 + 32978 YAQDLYVI 8 58 492.75398512443957 983.4934173156792 2 492.7528991699219 MULTI HCD FTMS 0 0 0 13691 17815.697265625 0.06358648546729576 13 -0.36669921875 6 Unmodified _YAQDLYVI_ ENSG00000148384|ENST00000371712|INPP5E;nc|ENSG00000148384|Q9NRR6-2|INPP5E 12.531546534597751 0.5015908124873912 1 VV{I|L} 3 6 24.041 0 0 2.4445 0 0 654.2675648419937 0 654.2675648419937 0 8.556518697048716 0 0 0 0.5 0 0 0 VV{I|L} 2.4445 - 19 NaN NaN 101616.3 NaN 10696 2999 13691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13699 61.123 NaN 1273200 35 0 275830 0.327 + 17029 LYIVHPTMF 9 89 568.7940859161241 1135.5736188990481 2 569.3057861328125 MULTI HCD FTMS 0 0 0 13698 20819.91796875 0.07913163132667154 23 -0.4669380187988281 1 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 67.34385681178166 0.00994769994983633 1 [Y{I|L}]{I|L}VHPTMY 9 1 + 44.681 0 0 3.9347 3.9347 82.304 0 0 0 2.408285674292415 21.74919076937762 2.408285674292415 5.44068044350275 0 1.5172203223519531 1.5228787452803376 0 0 [Y{I|L}]{I|L}VHPTMY;[Y{I|L}]{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[MD]V{M(Oxidation (M))|F};[YR][Y{M(Oxidation (M))|F}][{I|L}V]{I|L}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]{I|L}[AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR][AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.9347;3.4556;3.1528;1.415;1.1295;1.0892;0.72012;0.31862;0.27358 -;+;-;-;-;-;-;-;- + 557 NaN NaN 277189.1 NaN 10697 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13700 61.127 NaN 462620 35 0 47052 0.261 + 16816 LYECTGQFDF 10 75 611.7578938075267 1221.5012346818532 2 611.7579956054688 MULTI HCD FTMS 0 0 0 13698 210629.34375 0.4041315664553974 13 -0.36649322509765625 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 41.95555342248728 0.12843670176738353 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 73.549 0 0 6.0212 6.0212 87.296 0 0 0 6.60650842086838 57.791681396006 6.60650842086838 9.164539485499262 0 2.3494850021680094 0 1.066901560044258 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q{[VA]|[{I|L}G]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F} 6.0212;5.271;4.5117;4.0988;3.7614;3.3485;2.393;2.2114;2.0452;1.8636 -;-;-;-;-;-;-;-;-;- 501 NaN NaN 147441.5 NaN 10698 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13701 61.131 NaN 381060 35 0 66888 0.261 + 34516 YPFSSSNDEEL 11 71 644.2723855789125 1286.5302182246248 2 644.2725830078125 MULTI HCD FTMS 0 0 0 13698 168449.3125 0.5794286095118522 2 -0.055606842041015625 3 Unmodified _YPFSSSNDEEL_ ENSG00000158092|ENST00000481752|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion 51.487983226225225 0.07530802670407631 1 SSSNDEE{I|L} 8 3 58.946 0 0 4.5818 0 0 407.1841297834 0 407.1841297834 0 44.96784521457293 0 0 0 1.3494850021680094 0 0.7742275032520141 0.3252574989159953 + SSSNDEE{I|L} 4.5818 + + 112 NaN NaN 137235.5 NaN 10699 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13702 61.134 NaN 647200 35 0 85716 0.261 + 17371 LYQHEINLF 9 84 588.8062025945942 1175.5978522559883 2 588.8062744140625 MULTI HCD FTMS 0 0 0 13698 209799.09375 0.5367485160521567 -2 0.04901885986328125 4 Unmodified _LYQHEINLF_ ENSG00000115816|ENST00000234170|CEBPZ 56.17704186161178 0.022929533404884107 1 {[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}N{I|L}{M(Oxidation (M))|F} 9 2 + 73.011 0 0 6.2105 6.2105 86.564 0 0 0 6.9897000433601875 16.478174818886373 6.9897000433601875 6.9897000433601875 0 1.3807196863200843 1.5228787452803376 0 0.6861818737241735 {[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][HQ]E{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]EQV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}GG{I|L}{M(Oxidation (M))|F};[YQ]H{I|L}E{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][HQ]EQV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]E{[NV]|[RG]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][HQ]E{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E[AG]V{I|L}{M(Oxidation (M))|F};[YQ]H{I|L}EQV{I|L}{M(Oxidation (M))|F} 6.2105;5.616;5.5291;5.4273;5.2536;4.9346;4.8582;4.8327;4.7459;4.5722 -;+;-;-;-;-;-;-;-;- + 949 NaN NaN 183545.5 NaN 10700 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13703 61.138 NaN 426950 35 0 83687 0.261 + 31365 VYADKLLNI 9 58 524.8052362695594 1047.5959196059187 2 524.8054809570312 MULTI HCD FTMS 0 0 0 13698 144369.78125 0.8906701436190045 -2 0.04901885986328125 5 Unmodified _VYADKLLNI_ ENSG00000137770|ENST00000260327|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF;nc|ENSG00000137770|Q05D32-2|CTDSPL2 78.06048673739656 0.006479972202176041 1 [YV]ADK{I|L}{I|L}N{I|L} 9 0 + 94.747 0 0 9.0443 9.0443 89.979 0 0 0 3.9299937232345172 3.9299937232345172 3.9299937232345172 3.9299937232345172 0 2.5356668758921828 1.6989700043360187 0 0.3807196863200844 + + [YV]ADK{I|L}{I|L}N{I|L};VYADK{I|L}{I|L}N{I|L};[YV]ADK{I|L}{I|L}GG{I|L};[YV]A[SG]V{I|L}{I|L}N{I|L};[YV]{[QS]|[NT]}V{I|L}{I|L}N{I|L};[YV]A[SG]V{I|L}{I|L}GG{I|L};[YV]{[QS]|[NT]}V{I|L}{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YG]K{I|L}{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YG]K{I|L}{I|L}GG{I|L} 9.0443;8.6691;8.1653;7.4725;6.3717;6.2342;5.4927;4.7243;3.8453 +;+;-;-;-;-;-;-;- + 455 NaN NaN 146697.2 NaN 10701 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13704 61.141 NaN 105990 35 0 15008 0.262 -1 0 45 424.08147261638146 NaN 0 424.0813293457031 PEAK HCD FTMS 0 0 0 13698 39052.6796875 0.27626088990313186 -11 0.3002128601074219 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97947.9 NaN 10702 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13705 61.144 NaN 85841 35 0 7740.5 0.261 -1 SAIITEEML 9 53 511.7574890731431 1021.5004252130863 2 511.7734375 MULTI HCD FTMS 0 0 0 13698 6508.40380859375 0.12748593152990031 -8 0.2249603271484375 7 Oxidation (M) _SAIITEEM(Oxidation (M))L_ ENSG00000261150|ENST00000615648|EPPK1 21.536976647645854 0.1742816388551942 1 {I|L}TE[{M(Oxidation (M))|F}E]{I|L} 6 -1 29.284 0 0 2.8668 0 0 271.1530018537125 0 271.1530018537125 0 14.679801429304689 0 0 0 1.7302046884880937 0 0 0 {I|L}TE[{M(Oxidation (M))|F}E]{I|L} 2.8668 + + 33 NaN NaN 95905.1 NaN 10703 3000 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13707 61.149 NaN 577410 35 0 108250 0.327 + 5715 FPAGYMYPSM 10 85 598.243611247786 1194.472669562372 2 598.2439575195312 MULTI HCD FTMS 0 0 0 13706 270581.75 0.750570516102311 -19 0.5193634033203125 1 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 64.742 0 0 5.4201 0 0 63.997891423745905 0 63.997891423745905 0 44.56485629844558 0 0 0 0.9247425010840047 0 2.610924374808178 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.4201 - 429 + NaN NaN 171986.6 NaN 10704 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13708 61.154 NaN 724930 35 0 76321 0.261 + 29058 TYFRFQEEI 9 92 616.8011937070484 1231.5878344808966 2 616.8007202148438 MULTI HCD FTMS 0 0 0 13706 257340.734375 0.19035301131128526 13 -0.3562431335449219 2 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 91.08480475639789 0.0044975408722150376 1 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 72.214 0 0 5.8635 5.8635 87.747 0 0 0 40.531505892858135 13.898474608419775 13.898474608419775 9.208187539523749 0 2.4604093769761874 2 1.066901560044258 0.3807196863200844 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}GV{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}GV{M(Oxidation (M))|F}QGG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}GV{M(Oxidation (M))|F}[AG]N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NQ{M(Oxidation (M))|F}[TA]TY{I|L};{[QN]|[E{I|L}]|[KN]}E{NN|[MP]|[D{I|L}]|[EV]}WWE{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[AG]{M(Oxidation (M))|F}[TA]TY{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGQ{M(Oxidation (M))|F}[TA]TY{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NQ{M(Oxidation (M))|F}[TA]{I|L}[YT] 5.8635;5.1158;4.4287;3.6845;3.6845;2.4563;1.7822;1.7122;1.7122;0.96855 +;-;-;-;-;-;-;-;-;- + 1216 + NaN NaN 213826.8 NaN 10705 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13709 61.157 NaN 400310 35 0 45759 0.262 + 21097 PNIAVFDLAG 10 85 508.7754644265341 NaN 0 508.7925109863281 PEAK HCD FTMS 0 0 0 13706 6547.2998046875 1 0 0 3 Unmodified _PNIAVFDLAG_ REV__ENST00000505072.5_1_3:130613078-130649282:+|nuORF 25.399314129420986 0.2368981700431367 1 P{I|L}G{M(Oxidation (M))|F}VE 6 -1 28.977 0 0 2.8534 0 0 114.00903987238298 256.16684900455317 370.17588887693614 0 0 0 0 0 0 0 0.6237125054200234 0 P{I|L}G{M(Oxidation (M))|F}VE 2.8534 - 183 + NaN NaN 146592.5 NaN 10706 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13710 61.161 NaN 215270 35 0 23828 0.261 + -1 YNSWFVLIM 9 50 594.7927727369674 1187.5709925407348 2 594.7916259765625 MULTI HCD FTMS 0 0 0 13706 66408.078125 0.1266763363255348 20 -0.41568756103515625 4 Oxidation (M) _YNSWFVLIM(Oxidation (M))_ REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3 29.081581746732265 0.1154664336125038 1 [YN]S 3 -1 34.705 0 0 2.9224 0 0 0 820.4131563775999 820.4131563775999 4.259687322722812 0 0 0 0 0.4247425010840047 2 0 0 [YN]S 2.9224 + + 25 + NaN NaN 121267.4 NaN 10707 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13711 61.164 NaN 367120 35 0 27517 0.261 -1 CRDERRSW 8 89 582.7701204618585 NaN 0 582.770263671875 PEAK HCD FTMS 0 0 0 13706 75185.078125 0.28156031804935844 -14 0.3786163330078125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))RDERRSW_ ENST00000326080.9_2_5:154217706-154230085:-|nuORF 20.453626601364224 0.3843868670602312 1 ST{I|L}E 4 -1 24.029 0 0 2.0652 0 0 236.07941584738438 494.22553430728755 730.3049501546719 0 0 0 0 0 0.9247425010840047 0 0 0 ST{I|L}E 2.0652 - 203 + NaN NaN 138417.2 NaN 10708 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13712 61.167 NaN 344250 35 0 28536 0.261 -1 LPAAGVGDMVM 11 97 538.7592438788679 1075.5039348245357 2 538.7590942382812 MULTI HCD FTMS 0 0 0 13706 53811.80078125 0.12810757910504014 26 -0.48917388916015625 6 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 22.736283301280096 0.2589804299186601 1 SV{M(Oxidation (M))|F} 3 -1 33.522 0 0 3.1169 0 0 724.3463001935562 0 724.3463001935562 0 16.443525400371293 0 0 0 1.1505149978319906 0 0.3054621874040891 0 SV{M(Oxidation (M))|F} 3.1169 - 454 NaN NaN 141494.5 NaN 10709 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13713 61.17 NaN 137810 35 0 13800 0.261 + 19605 NTQFTPLI 8 45 467.2555184511249 932.4964839690498 2 467.25537109375 MULTI HCD FTMS 0 0 0 13706 31908.9921875 0.5971604711109337 -6 0.16040420532226562 7 Unmodified _NTQFTPLI_ REV__CIC|p.A652Pfs*76|1|0.32|ENSG00000079432|chr19:42290717-42290717|C/-|frameshift_variant;REV__ENSG00000079432|ENST00000681038|CIC 15.847184025352803 0.47719562709667024 1 P{I|L}{I|L} 3 -1 28.188 0 0 3.0228 0 0 591.2648182599625 0 591.2648182599625 0 13.58349385648225 0 0 0 0.5 0 0 0 P{I|L}{I|L} 3.0228 + + 16 NaN NaN 110363.8 NaN 10710 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13714 61.174 NaN 73991 35 0 3751.1 0.261 -1 0 46 629.0036010742188 NaN 0 629.0036010742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 1 H 1 -1 1.5938 0 0 0.1269 0 0 591.66252118965 524.2511080377561 1115.913629227406 0 0 0 0 0 0 0 0 0 H 0.1269 - 1 + NaN NaN 93669.1 NaN 10711 3001 13706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13716 61.179 NaN 2506300 35 0 448810 0.327 + 24345 RYIDRIHIFF 10 76 460.59069929921907 1378.7502684978572 3 460.59100341796875 MULTI HCD FTMS 0 0 0 13715 1237070.75 0.17920462324382813 16 -0.3616218566894531 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 30.43146612281011 0.22844141563887774 1 H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 6 48.488 0 0 3.5168 0 0 816.4605281687569 0 816.4605281687569 0 41.49797211252192 0 0 0 1.805462187404089 0 0 0 + H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.5168 + + 97 NaN NaN 453194.5 NaN 10712 3002 13715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13717 61.183 NaN 1012900 35 0 216030 0.261 + 17030 LYIVHPTMF 9 86 568.7940859161241 1135.5736188990481 2 569.305908203125 MULTI HCD FTMS 0 0 0 13715 43838.2578125 0.1666189492402982 25 -0.459716796875 2 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 67.34385681178166 0.00994769994983633 1 {I|L}Y{I|L}VH[EC]{I|L}{M(Oxidation (M))|F} 9 3 + 64.14 0 0 5.6482 5.6482 85.02 0 0 0 41.946895687854905 16.478174818886373 16.478174818886373 5.563725500178215 0 1.7306883134323936 1.6989700043360187 0 0 {I|L}Y{I|L}VH[EC]{I|L}{M(Oxidation (M))|F};{I|L}Y{I|L}VH[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[TP]MY;[Y{I|L}]{I|L}VH[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HM][{I|L}A]{M(Oxidation (M))|F}{I|L}Y 5.6482;5.1583;4.0784;3.5482;0.89646 -;+;-;+;- + 482 + NaN NaN 251148.6 NaN 10713 3002 13715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13718 61.187 NaN 470930 35 0 206610 0.261 + 30394 VLLVLMPPMF 10 53 580.3346179869756 1158.654683040751 2 580.3350219726562 MULTI HCD FTMS 0 0 0 13715 204333.921875 0.10972817150141605 18 -0.3774757385253906 3 Unmodified _VLLVLMPPMF_ ENSG00000176555|ENST00000319988|OR4S1 12.531546534597751 0.39389615866941496 1 V{I|L}[QP][{I|L}A]{M(Oxidation (M))|F}V 8 6 46.107 0 0 3.9794 0 0 0 288.09919153385005 288.09919153385005 27.523656471886326 0 0 0 0 1.4247425010840047 1.3979400086720375 0 0 V{I|L}[QP][{I|L}A]{M(Oxidation (M))|F}V 3.9794 - 45 + NaN NaN 157393.2 NaN 10714 3002 13715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13719 61.19 NaN 236650 35 0 15960 0.261 + 27376 SYSPLLREF 9 71 556.2919536375634 1110.5693543419268 2 556.2925415039062 MULTI HCD FTMS 0 0 0 13715 57358.44921875 1 0 0 4 Unmodified _SYSPLLREF_ ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5 51.41523569358685 0.02959097413485123 1 {[{M(Oxidation (M))|F}C]|[YS]}SP{I|L}{I|L}{I|L}DG{M(Oxidation (M))|F} 10 3 {[{M(Oxidation (M))|F}C]|[YS]} + + 54.11 5.2288 2.0907 4.8723 4.8723 61.367 0 0 0 0 46.03830378720197 0 0 0 0.7742275032520141 0 0.805462187404089 0 {[{M(Oxidation (M))|F}C]|[YS]}SP{I|L}{I|L}{I|L}DG{M(Oxidation (M))|F} 4.8723 - 379 + NaN NaN 115436.6 NaN 10715 3002 13715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13720 61.193 NaN 237620 35 0 12578 0.261 + 4732 EYSKVLQFKYF 11 61 484.5905659428237 1450.749868428671 3 484.92523193359375 MULTI HCD FTMS 0 0 0 13715 30008.03515625 0.5851374811518881 1 -0.02285003662109375 5 Unmodified _EYSKVLQFKYF_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C 4.11662792887243 0.40086653484894175 1 Q 1 10 10.044 0 0 0.69235 0 0 719.3852478449602 600.2821952844232 1319.6674431293834 0 0 0 0 0 0 0 0 0.3054621874040891 + Q 0.69235 + + 131 + NaN NaN 117945 NaN 10716 3002 13715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13721 61.197 NaN 183770 35 0 28457 0.261 + 4553 EYLKNIIYRF 10 38 453.5869004749393 1357.7388720250178 3 453.9206237792969 MULTI HCD FTMS 0 0 0 13715 40269.1796875 0.40808990169575127 4 -0.11816024780273438 6 Unmodified _EYLKNIIYRF_ ENSG00000179562|ENST00000321407|GCC1 3.5870582119611467 0.4563168352879256 1 {I|L}{I|L} 2 8 8.5835 0 0 0.63219 0 0 502.2540740372636 626.2941988580686 1128.5482728953323 0 0 0 0 0 0 0 0 0 + {I|L}{I|L} 0.63219 + + 17 + NaN NaN 107247.3 NaN 10717 3002 13715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13723 61.202 NaN 1129000 35 0 232550 0.327 + 17031 LYIVHPTMF 9 91 568.7940859161241 1135.5736188990481 2 569.3051147460938 MULTI HCD FTMS 0 0 0 13722 60511.8125 0.22999122498205327 26 -0.4621925354003906 1 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 70.71552829651908 0.008856681705782516 1 [Y{I|L}]{I|L}VH[TP]MY 9 1 + 52.092 0 0 4.5873 4.5873 84.577 0 0 0 20.33711966192806 21.90236967123205 20.33711966192806 8.93553046518285 0 1.6747425010840047 1.5228787452803376 0.3494850021680094 0 [Y{I|L}]{I|L}VH[TP]MY;[Y{I|L}]{I|L}VH[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[TP]MY;[Y{I|L}]V{I|L}H[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDN{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDN{I|L}[AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDGG{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[QA][CS]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}K{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDGG{I|L}[AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.5873;3.8004;3.6831;2.8962;1.7842;0.97336;0.97336;0.82412;0.16983;0.16632 -;+;-;-;-;-;-;-;-;- + 475 NaN NaN 269270.6 NaN 10718 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13724 61.206 NaN 904520 35 0 182250 0.264 -1 0 71 413.23965808791104 1236.697144863933 3 413.2398681640625 MULTI HCD FTMS 0 0 0 13722 195145.734375 0.17504895467857487 9 -0.2653694152832031 2 NaN NaN 1 D{I|L}QR{I|L}[C(Carbamidomethyl (C))N] 7 -1 25.666 0 0 2.0754 0 0 319.2384510724625 0 319.2384510724625 0 7.953759824775979 0 0 0 0 0 0 0.7742275032520141 D{I|L}QR{I|L}[C(Carbamidomethyl (C))N] 2.0754 - 167 NaN NaN 212614.7 NaN 10719 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13725 61.21 NaN 424760 35 0 176470 0.261 -1 0 64 427.3025079880766 852.5904630429533 2 427.3026123046875 MULTI HCD FTMS 0 0 0 13722 97956.046875 0.09757022371971732 35 -0.6571311950683594 3 NaN NaN 1 YG{M(Oxidation (M))|F} 3 -1 18.416 0 0 2.16 0 0 467.42180567166264 0 467.42180567166264 0 12.93182501400722 0 0 0 0 0 0 0 YG{M(Oxidation (M))|F} 2.16 - 25 + NaN NaN 139142.8 NaN 10720 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13726 61.213 NaN 292410 35 0 31878 0.261 + 12926 KYGPVFSF 8 62 472.7474558152772 943.4803586973544 2 472.747314453125 MULTI HCD FTMS 0 0 0 13722 92375.6796875 0.16401889898851688 10 -0.2880363464355469 4 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 71.13359017698441 0.02838631364316653 1 [YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 0 [YK] + + 61.956 5.2288 1.7959 6.5667 6.5667 64.307 0 0 0 0 42.3143091967637 0 0 0 2.305462187404089 0 1.1989700043360187 0 + + [YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.5667 + + 179 + NaN NaN 139825.2 NaN 10721 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13727 61.216 NaN 365830 35 0 59805 0.261 -1 KYAMMFAEL 9 75 560.264004709818 1118.5134564864359 2 560.2642211914062 MULTI HCD FTMS 0 0 0 13722 73179.84375 0.13286247136661702 17 -0.3546257019042969 5 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 27.628801355627647 0.12213550946336599 1 {M(Oxidation (M))|F}M{M(Oxidation (M))|F}AE{I|L} 6 -1 42.409 0 0 3.7916 0 0 362.19517714668126 0 362.19517714668126 0 20.465978039238735 0 0 0 0.8252574989159953 0 0 0 {M(Oxidation (M))|F}M{M(Oxidation (M))|F}AE{I|L} 3.7916 + + 263 NaN NaN 142617.6 NaN 10722 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13728 61.22 NaN 113790 35 0 49505 0.261 -1 0 40 516.3014341890207 515.2941577224207 1 516.3013305664062 MULTI HCD FTMS 0 0 0 13722 38128.5 0.1804119713647423 17 -0.3546257019042969 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105361.6 NaN 10723 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13729 61.223 NaN 188260 35 0 22053 0.261 -1 YPEEVSSMVL 10 52 585.2732758086778 1168.5319986841555 2 585.2742309570312 MULTI HCD FTMS 0 0 0 13722 46902.5234375 0.21076303192316606 -8 0.21271133422851562 7 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 29.081581746732265 0.240155558137004 1 ES{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 6 -1 40.718 0 0 3.4846 0 0 488.24180800605626 0 488.24180800605626 0 21.25447181216778 0 0 0 1.3807196863200843 0 0.3494850021680094 0 ES{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 3.4846 - 60 NaN NaN 114181 NaN 10724 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13730 61.226 NaN 140140 35 0 8805.5 0.261 + 10180 IFTDLSSRF 9 65 543.2850675900745 1084.555582246949 2 543.2853393554688 MULTI HCD FTMS 0 0 0 13722 28564.341796875 0.3552809210510973 4 -0.11487960815429688 8 Unmodified _IFTDLSSRF_ ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant 53.40400417844725 0.026808823219830042 1 S{I|L}DTE{I|L} 6 7 56.659 0 0 5.2242 0 0 408.2120533673844 0 408.2120533673844 0 31.398101381235357 0 0 0 1.4531198197908841 0 0.4247425010840047 0 S{I|L}DTE{I|L} 5.2242 - 184 NaN NaN 109667.6 NaN 10725 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13731 61.23 NaN 148110 35 0 23199 0.262 + 4554 EYLKNIIYRF 10 39 453.5869004749393 1357.7388720250178 3 453.9208068847656 MULTI HCD FTMS 0 0 0 13722 31267.962890625 0.31687111585792854 5 -0.15097808837890625 9 Unmodified _EYLKNIIYRF_ ENSG00000179562|ENST00000321407|GCC1 3.3196427980023873 0.4577323075863651 1 P{I|L} 2 9 10.969 0 0 0.80789 0 0 405.18933205526645 739.3786745838078 1144.5680066390742 0 0 0 0 0 0 0 0 0 P{I|L} 0.80789 - 9 + NaN NaN 103885.6 NaN 10726 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13732 61.233 NaN 108760 35 0 12743 0.261 + -1 CDCRSACGEGF 11 47 631.2241239645217 1260.4336949958433 2 631.7255859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Carbamidomethyl (C) _CDC(Carbamidomethyl (C))RSAC(Carbamidomethyl (C))GEGF_ REV__ENSG00000187800|ENST00000292357|PEAR1;REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF 0.9622753412299311 0.4147004537482263 1 [YN]A[HQ]NWA 8 -1 27.466 0 0 2.1791 0 0 0 272.99095238972524 272.99095238972524 25.872604566103846 0 0 0 0 0 1.6989700043360187 0 0 [YN]A[HQ]NWA 2.1791 - 67 NaN NaN 97898.5 NaN 10727 3003 13722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13734 61.238 NaN 2144200 35 0 282610 0.327 + 13298 KYMDVQFDF 9 90 604.7680796891424 1207.5216064450847 2 604.7685546875 MULTI HCD FTMS 0 0 0 13733 1561232 0.294878665827933 16 -0.3184318542480469 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 136.39213081522345 0.00021731600835925866 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 90.389 0 0 7.4855 7.4855 87.016 0 0 0 2.1741655787624836 48.98062535455438 2.1741655787624836 2.7684772199832253 0 2.305462187404089 0 1.3539171939081172 1.0941876774005248 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 7.4855;7.2562;7.2234;6.7229;6.4937;6.4609;6.2433;6.1084;5.9295;5.6586 +;-;-;-;-;-;-;-;-;- + 4016 NaN NaN 409310.2 NaN 10728 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13735 61.242 NaN 711260 35 0 70424 0.261 + 18158 MPDGQFKDISL 11 105 625.8080112008108 1249.6014694684216 2 625.8079223632812 MULTI HCD FTMS 0 0 0 13733 454234.6875 0.9844302928948163 -1 0.03619384765625 2 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 119.6023987664813 0.017433618044069857 1 {NN|[MP]|[D{I|L}]|[EV]}DGQ{M(Oxidation (M))|F}KD{I|L} 9 2 95.324 0 0 7.6284 0 0 0 215.1033147596551 215.1033147596551 70.90894901660774 0 0 0 0 3.146591250700361 1.6989700043360187 1.0189301784845295 0.5866968715561641 + {NN|[MP]|[D{I|L}]|[EV]}DGQ{M(Oxidation (M))|F}KD{I|L} 7.6284 + + 3004 NaN NaN 199473.9 NaN 10729 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13736 61.246 NaN 653920 35 0 29250 0.261 + 21935 QEDLRTFSW 9 100 591.2829617742384 1180.5513706152767 2 591.282958984375 MULTI HCD FTMS 0 0 0 13733 106134.5703125 0.3571426505860407 5 -0.13432693481445312 3 Unmodified _QEDLRTFSW_ ENSG00000145907|ENST00000356245|G3BP1 72.96794272382148 0.008127836904478181 1 NEE{I|L}AV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SW 10 5 + 43.58 0 0 3.6915 3.6915 85.414 0 0 0 20.2524439246897 6.136218907515307 6.136218907515307 9.956130378462476 0 0.5994850021680094 0 0.7742275032520141 0 NEE{I|L}AV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SW;{[CT]|[{M(Oxidation (M))|F}G]}S[DP]R{M(Oxidation (M))|F}E{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HV]QA{[HG]|PP}S{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTE{[HG]|PP}N;[YQ][DP]R{M(Oxidation (M))|F}E{I|L}N;[YQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VA{[HG]|PP}S[VS];[YQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTE{[HG]|PP}N;{[CT]|[{M(Oxidation (M))|F}G]}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[HK]S{[DA]|[EG]};[YQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[HK]S{[DA]|[EG]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HV]QTE{[HG]|PP}N 3.6915;2.8482;2.276;2.2217;2.1912;1.8704;1.8571;1.7802;1.7176;1.6068 -;-;-;-;-;-;-;-;-;- 2817 + NaN NaN 185475.6 NaN 10730 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13737 61.249 NaN 833800 35 0 129010 0.261 + 27363 SYSMIVNNL 9 93 528.7551482305643 1055.4957435279284 2 528.7552490234375 MULTI HCD FTMS 0 0 0 13733 252891.796875 0.21716048253010042 -12 0.3396110534667969 4 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 110.6747026088012 0.0028322563155251486 1 [YV]PV{I|L}{M(Oxidation (M))|F}KP 8 7 53.37 0 0 5.0564 0 0 0 108.93425606138467 108.93425606138467 30.112300306688482 0 0 0 0 1.3807196863200843 1.5228787452803376 0 0 [YV]PV{I|L}{M(Oxidation (M))|F}KP 5.0564 - 578 NaN NaN 224137.8 NaN 10731 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13738 61.252 NaN 176650 35 0 14783 0.261 + 16431 LSMGSASYYDF 11 55 620.7631415492712 1239.5117301653422 2 620.7626342773438 MULTI HCD FTMS 0 0 0 13733 105906.578125 0.3640599595979562 11 -0.2751197814941406 5 Unmodified _LSMGSASYYDF_ REV__ENSG00000157103|ENST00000287766|SLC6A1 5.296884461304476 0.39569033063702824 1 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 54.284 0 0 4.3795 0 0 280.1060047834 0 280.1060047834 0 47.2944167232194 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.3795 - 122 NaN NaN 105129.9 NaN 10732 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13739 61.256 NaN 307550 35 0 36074 0.262 + 35122 YVEKFHLQ 8 76 532.2820432436615 1062.549533554123 2 532.268310546875 MULTI HCD FTMS 0 0 0 13733 39109.90234375 0.07724706617870304 24 -0.4166450500488281 6 Unmodified _YVEKFHLQ_ ENSG00000236543|ENST00000430816|unknown 13.50788311687929 0.4944073034352369 1 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 7 29.825 0 0 2.807 0 0 165.10588228634793 0 165.10588228634793 0 0.38827606857658736 0 0 0 0 0 0.3494850021680094 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.807 - 210 + NaN NaN 135919.1 NaN 10733 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13740 61.259 NaN 278650 35 0 51869 0.261 -1 0 47 514.5663131492491 2054.2361467305964 4 514.817626953125 MULTI HCD FTMS 0 0 0 13733 25487.55078125 0.3837294181342606 -2 0.05904388427734375 7 NaN NaN 1 {NN|[MP]|[D{I|L}]|[EV]}Y 3 -1 39.705 0 0 1.9328 0 0 0 1660.039885928551 1660.039885928551 25.72559982972642 0 0 0 0 0.9247425010840047 2 0 0 {NN|[MP]|[D{I|L}]|[EV]}Y 1.9328 - 9 + NaN NaN 127901.5 NaN 10734 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13741 61.262 NaN 110000 35 0 10400 0.261 -1 VCSMPGALPLC 11 50 574.26863751012 1146.52272208704 2 574.7722778320312 MULTI HCD FTMS 0 0 0 13733 31740.3984375 0.00890811334337378 -20 0.5555648803710938 8 Carbamidomethyl (C) _VCSMPGALPLC(Carbamidomethyl (C))_ ENST00000395879.5_2_7:43680244-43687232:-|nuORF 8.745405648335112 0.3805662881914433 1 SWV[YT]SW 7 -1 24.658 0 0 2.1507 0 0 219.0749010312498 0 219.0749010312498 0 7.1407855255014105 0 0 0 0.8494850021680094 0 0 0 SWV[YT]SW 2.1507 - 143 + NaN NaN 102011.6 NaN 10735 3004 13733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13743 61.267 NaN 4113200 35 0 489350 0.327 + 27062 SYMGHFDLL 9 119 549.7497688734081 1097.4849848136162 2 549.7501831054688 MULTI HCD FTMS 0 0 0 13742 2878775.25 0.2779213806289024 19 -0.335296630859375 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 141.82661023413823 1.746659319327287E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 64.42 0 0 5.8698 5.8698 91.114 0 0 0 5.920234257298276 25.81546893236257 5.920234257298276 22.83809673312028 0 2.1237125054200234 0 1.3851518780601921 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]YS{I|L};{I|L}[YT]EHG{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}YS{I|L} 5.8698;3.7889;3.5437;3.5009;3.4518;3.3832;3.3124;2.836;2.6766;2.6475 +;-;-;-;-;-;-;-;-;- + 4459 NaN NaN 621170.5 NaN 10736 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13744 61.272 NaN 492300 35 0 159940 0.261 + 21082 PMYMAPEVI 9 61 525.7529062461851 1049.4912595591702 2 525.7532348632812 MULTI HCD FTMS 0 0 0 13742 128728.0546875 0.9740708156703637 1 -0.029552459716796875 2 Unmodified _PMYMAPEVI_ ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1;ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant 23.1484247019978 0.1603590852062899 1 [YV]{[ES]|[DT]|[{I|L}C]}[DP]EV{I|L} 9 5 + 46.832 0 0 4.4623 4.4623 88.033 0 0 0 3.1336373073770574 22.879099962974152 3.1336373073770574 16.989700043360184 0 1 1.6989700043360187 0.75 0 [YV]{[ES]|[DT]|[{I|L}C]}[DP]EV{I|L};[YE][VS][DP]EV{I|L};[C(Carbamidomethyl (C))C][{I|L}T]{[NV]|[RG]}EV{I|L} 4.4623;2.8435;1.2015 -;-;- 68 NaN NaN 152381.5 NaN 10737 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13745 61.275 NaN 307230 35 0 30246 0.261 + -1 QQPGEAAAFFD 11 61 611.7715944915867 NaN 0 611.7579956054688 PEAK HCD FTMS 0 0 0 13742 14258.06640625 1 0 0 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QQPGEAAAFFD_ REV__ENST00000241502.8_1_3:197476625-197476913:+|nuORF 8.745405648335112 0.31731194618894887 1 D{M(Oxidation (M))|F}Q 3 -1 19.253 0 0 1.5761 0 0 165.10651826307145 663.2470421720137 828.3535604350852 0 0 0 0 0 0.3054621874040891 0 0 0 D{M(Oxidation (M))|F}Q 1.5761 - 148 + NaN NaN 134812.2 NaN 10738 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13746 61.279 NaN 1851700 35 0 155950 0.264 -1 YDSCCVIDKIT 11 82 439.5336217219572 1315.5790357660717 3 439.5337829589844 MULTI HCD FTMS 0 0 0 13742 305634.71875 0.09373199214593052 -6 0.16708755493164062 4 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 23.015651743759182 0.2565462835198615 1 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F} 7 -1 70.31 0 0 5.3444 0 0 0 357.21445724209525 357.21445724209525 50.15485646555199 0 0 0 0 1.7302046884880937 2 0.7302046884880937 0 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F} 5.3444 - 569 + NaN NaN 363409.9 NaN 10739 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13747 61.282 NaN 238220 35 0 10769 0.261 + 10208 IGMEKFFNI 9 85 557.7836580437511 1113.552763154302 2 557.7835693359375 MULTI HCD FTMS 0 0 0 13742 97147.71875 0.6867949805437026 -1 0.02956390380859375 5 Oxidation (M) _IGM(Oxidation (M))EKFFNI_ ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;RNF216-MTHFD1L|1|fusion;RNF216-MTHFD1L|2|fusion 61.08992128646608 0.016056751534446034 1 {I|L}G{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L} 9 0 + 61.744 0 0 5.5448 5.5448 89.175 0 0 0 47.14037732705787 7.438171322829611 7.438171322829611 13.653317468841074 0 2.368415180652539 0 0.28872548999643577 0.8252574989159953 + + {I|L}G{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L};{I|L}G{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L};{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}GG{I|L};{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}GG{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L};[PS][YV]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}GG{I|L};[PS][YV]K{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 5.5448;4.3187;4.0731;3.998;3.2462;3.1711;3.0869;2.387;2.26;1.1609 +;-;-;-;-;-;-;-;-;- + 306 + NaN NaN 124738.1 NaN 10740 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13748 61.285 NaN 150470 35 0 54787 0.262 + 14129 LADGLKVVL 9 39 464.29715841581015 926.5797638984203 2 464.2972412109375 MULTI HCD FTMS 0 0 0 13742 82169.0078125 1 0 0 6 Unmodified _LADGLKVVL_ ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF 27.628801355627647 0.12213550946336599 1 [{I|L}A]D 3 6 35.942 0 0 3.879 0 0 0 624.4093286779703 624.4093286779703 9.973024840566467 0 0 0 0 1 1.6989700043360187 0 0 + [{I|L}A]D 3.879 + + 9 NaN NaN 101295.5 NaN 10741 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13749 61.289 NaN 226920 35 0 17064 0.261 + -1 STCPDFDYM 9 54 576.2054356689324 1150.3963184046647 2 576.205810546875 MULTI HCD FTMS 0 0 0 13742 46743.7734375 0.3244414379485455 17 -0.3101081848144531 7 Carbamidomethyl (C),Oxidation (M) _STC(Carbamidomethyl (C))PDFDYM(Oxidation (M))_ REV__ENSG00000179833|ENST00000313349|SERTAD2 1.844237919475145 0.33703635659052655 1 {I|L} 1 -1 4.6041 0 0 0.40022 0 0 163.90719594548347 870.3818127016907 1034.2890086471741 0 0 0 0 0 0 0 0 0 {I|L} 0.40022 - 2 + NaN NaN 122174.8 NaN 10742 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13750 61.292 NaN 290780 35 0 16222 0.261 + 20789 PHDTPPPVSSM 11 92 582.7701204618585 NaN 0 582.7737426757812 PEAK HCD FTMS 0 0 0 13742 93474.7421875 0.3500532126353268 -10 0.2784690856933594 8 Unmodified _PHDTPPPVSSM_ MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant 16.149105407346934 0.28641792874078525 1 ST{I|L} 3 10 22.167 0 0 1.9052 0 0 236.0793206786729 623.2693670874521 859.3486877661251 0 0 0 0 0 1.1989700043360187 0 0 0 ST{I|L} 1.9052 - 278 + NaN NaN 128337.4 NaN 10743 3005 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13752 61.297 NaN 584270 35 0 62826 0.327 + 26489 SVDETIEHVF 10 91 588.2845087767478 1174.5544646202954 2 588.806396484375 MULTI HCD FTMS 0 0 0 13751 50934.75390625 1 0 0 1 Unmodified _SVDETIEHVF_ ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-3|POLE2 22.736283301280096 0.29844449404982915 1 {I|L}VQ{[YD]|[{M(Oxidation (M))|F}M]}N{I|L}{M(Oxidation (M))|F} 8 7 52.846 0 0 4.4992 0 0 164.03468809078146 0 164.03468809078146 0 24.451891939099664 0 0 0 0.805462187404089 0 0.28872548999643577 1.1549471895720984 {I|L}VQ{[YD]|[{M(Oxidation (M))|F}M]}N{I|L}{M(Oxidation (M))|F} 4.4992 - 1297 + NaN NaN 174400.3 NaN 10744 3006 13751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13753 61.301 NaN 517150 35 0 104750 0.261 + 5716 FPAGYMYPSM 10 75 598.243611247786 1194.472669562372 2 598.2439575195312 MULTI HCD FTMS 0 0 0 13751 191857.6875 0.5321967336121926 -14 0.3987274169921875 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 62.669 0 0 5.2466 0 0 63.99706725190078 0 63.99706725190078 0 52.936909460092 0 0 0 0.8807196863200843 0 2.385151878060192 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.2466 - 402 + NaN NaN 171632.5 NaN 10745 3006 13751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13754 61.305 NaN 316250 35 0 23672 0.261 + 19578 NTEERYENF 9 71 601.2602524235309 1200.5059519138617 2 601.2604370117188 MULTI HCD FTMS 0 0 0 13751 178042.71875 0.989987383990883 1 -0.01956939697265625 3 Unmodified _NTEERYENF_ REV__tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1 16.149105407346934 0.22083165093524068 1 NH[HQ]EN{M(Oxidation (M))|F} 7 -1 35.182 0 0 2.9306 0 0 276.1105213849625 0 276.1105213849625 0 24.903726003536306 0 0 0 0.8807196863200843 0 0 0.3054621874040891 NH[HQ]EN{M(Oxidation (M))|F} 2.9306 - 154 NaN NaN 132737.5 NaN 10746 3006 13751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13755 61.308 NaN 175760 35 0 17583 0.261 -1 VTFEAAVFCDI 11 50 636.304114099691 1270.593675266182 2 636.804443359375 MULTI HCD FTMS 0 0 0 13751 21441.326171875 0.5164904956078383 1 -0.01956939697265625 4 Carbamidomethyl (C) _VTFEAAVFC(Carbamidomethyl (C))DI_ ENSG00000158683|ENST00000289672|PKD1L1;nc|ENSG00000158683|Q8TDX9-2|PKD1L1 8.155526934196011 0.3831532958467648 1 VD{I|L} 3 -1 29.693 0 0 2.3369 0 0 925.4048939435562 0 925.4048939435562 0 21.94537812595911 0 0 0 0.5 0 0 0 VD{I|L} 2.3369 - 10 NaN NaN 111538.3 NaN 10747 3006 13751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13756 61.312 NaN 63800 35 0 3711 0.261 -1 RNQRECCWK 9 40 640.2926198114649 NaN 0 640.2689208984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _RNQREC(Carbamidomethyl (C))CWK_ ENST00000560764.5_1_15:57511653-57526277:+|nuORF 0.5247636613948944 0.2927039108006614 1 P 1 -1 3.0989 0 0 0.24238 0 0 588.4776213594547 590.0134981744749 1178.4911195339296 0 0 0 0 0 0 0 0 0 P 0.24238 - 1 + NaN NaN 94789.6 NaN 10748 3006 13751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13758 61.316 NaN 2305300 35 0 422890 0.327 + 24346 RYIDRIHIFF 10 80 460.59069929921907 1378.7502684978572 3 460.5910339355469 MULTI HCD FTMS 0 0 0 13757 693372.875 0.10044342640213984 21 -0.33795928955078125 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 33.82136114134338 0.19902429369531874 1 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 70.636 0 0 5.1232 0 0 547.2755242141008 0 547.2755242141008 0 61.172137691284405 0 0 0 2.25 0 0 0.6989700043360187 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1232 + + 210 NaN NaN 419305.8 NaN 10749 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13759 61.321 NaN 557430 35 0 117970 0.261 + 16033 LPSEDPYQL 9 67 531.2613947767766 1060.508236620353 2 531.2613525390625 MULTI HCD FTMS 0 0 0 13757 403038.53125 0.30093902385983107 -5 0.13772964477539062 2 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 30.636539890814138 0.10832830463492794 1 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L} 9 2 + 42.343 0 0 3.9927 3.9927 82.571 0 0 0 0.647124887093824 26.76985621489237 0.647124887093824 6.008337601396853 0 0.5 0 0 0.75 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L};[VP]{[ET]|[MV]}DPYQ{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}DPYQ{I|L};{[QN]|[E{I|L}]|[KN]}[PS]DPY[AG]{I|L};[VP]{[ET]|[MV]}DPY[AG]{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}DPY[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}YM[{M(Oxidation (M))|F}T]Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}YMG[YG]V{I|L};{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RRNN 3.9927;3.4262;3.1423;3.1244;2.2512;1.9673;1.6378;1.2106;0.26905 -;-;+;-;-;-;-;-;- + 146 NaN NaN 172498.5 NaN 10750 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13760 61.324 NaN 675890 35 0 132170 0.261 + 17032 LYIVHPTMF 9 78 568.7940859161241 1135.5736188990481 2 569.3052978515625 MULTI HCD FTMS 0 0 0 13757 40554.87109375 0.15413956542519405 30 -0.5195426940917969 3 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 53.57557251787612 0.02656881086235134 1 [Y{I|L}]{I|L}VH[TP]MY 9 1 + 41.754 0 0 3.6769 3.6769 88.48 0 0 0 3.2492563016127463 14.72743112049912 3.2492563016127463 32.29486901908295 0 1.3494850021680094 1.6989700043360187 0 0 [Y{I|L}]{I|L}VH[TP]MY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]{I|L}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[TP]{[RE]|[WV]}[{M(Oxidation (M))|F}V]Q{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}QQ[{M(Oxidation (M))|F}V]Q{I|L}{M(Oxidation (M))|F};[TP]P{[MG]|[TS]}[{M(Oxidation (M))|F}V]Q{I|L}{M(Oxidation (M))|F};[TP]{[RE]|[WV]}T{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}QQT{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[DN]{I|L}[AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.6769;0.83301;0.82175;0.79271;0.76279;0.55665;0.20622;0.14727;0.022123 -;-;-;-;-;-;-;-;- 340 NaN NaN 185018.9 NaN 10751 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13761 61.328 NaN 324500 35 0 53756 0.261 + 10653 IPVESEVNL 9 57 500.2717266539479 998.5289003746958 2 500.2713317871094 MULTI HCD FTMS 0 0 0 13757 132050.046875 0.1470810089720219 -4 0.11487960815429688 4 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 49.93300154707207 0.03166451819912738 1 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}VN{I|L} 9 3 + 46.628 0 0 4.6697 4.6697 90.138 0 0 0 0.3554434910878257 32.67606240177031 0.3554434910878257 40.197180143148614 0 1.1747425010840047 0 0.4247425010840047 0.75 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}VN{I|L};{[NV]|[RG]}R[QP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 4.6697;0.64408 -;- 55 NaN NaN 123967.4 NaN 10752 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13762 61.331 NaN 476370 35 0 26651 0.261 + 31416 VYAQVARLF 9 96 533.8056679013904 1065.5967828695807 2 533.8058471679688 MULTI HCD FTMS 0 0 0 13757 140586.453125 1 0 0 5 Unmodified _VYAQVARLF_ ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF 74.92900055777586 0.007493270374442853 1 [YV]AQVAR{I|L}{M(Oxidation (M))|F} 9 0 + 78.527 0 0 7.3693 7.3693 90.452 0 0 0 7.089380922211106 54.3360688456422 7.089380922211106 9.208187539523749 0 3.1237125054200234 1.5228787452803376 0 0 + + [YV]AQVAR{I|L}{M(Oxidation (M))|F};[YV]A[AG]VAR{I|L}{M(Oxidation (M))|F} 7.3693;6.5052 +;- + 1081 NaN NaN 150879.5 NaN 10753 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13763 61.334 NaN 334710 35 0 143450 0.261 + 30226 VINGRTKAMVA 11 61 580.3346179869756 1158.654683040751 2 580.3351440429688 MULTI HCD FTMS 0 0 0 13757 141863 0.07618102491679288 23 -0.3663978576660156 6 Unmodified _VINGRTKAMVA_ ENSG00000269858|ENST00000303961|EGLN2;nc|ENSG00000269858|Q96KS0-2|EGLN2 8.155526934196011 0.3831532958467648 1 [{I|L}V][QP][{I|L}A]{M(Oxidation (M))|F}V 8 6 30.15 0 0 2.6022 0 0 0 288.0990389459594 288.0990389459594 24.665762445130497 0 0 0 0 1.5 1.6989700043360187 0 0 [{I|L}V][QP][{I|L}A]{M(Oxidation (M))|F}V 2.6022 - 58 + NaN NaN 133142.4 NaN 10754 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13764 61.338 NaN 191200 35 0 11416 0.261 + 19412 NPIGFVEKL 9 72 508.7922790855909 1015.5700052379818 2 508.79241943359375 MULTI HCD FTMS 0 0 0 13757 57464.453125 0.22390208695636293 8 -0.19643402099609375 7 Unmodified _NPIGFVEKL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 64.9267550582149 0.010729834900650251 1 NP{I|L}G{M(Oxidation (M))|F}VEK{I|L} 9 0 + 61.64 0 0 6.0695 6.0695 92.764 0 0 0 38.68108131561996 7.632192780232785 7.632192780232785 47.49404740203601 0 2.2346368802282015 0 0.3252574989159953 0 + + NP{I|L}G{M(Oxidation (M))|F}VEK{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T{[DA]|[EG]}{[HG]|PP}K{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T{I|L}[PS][NP]{I|L} 6.0695;1.3929;0.92525 +;-;- + 178 + NaN NaN 111522.7 NaN 10755 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13765 61.341 NaN 147610 35 0 26733 0.261 + 2744 DWEEKRHFR 9 57 434.8822326184507 1301.6248684555521 3 434.88214111328125 MULTI HCD FTMS 0 0 0 13757 56590.77734375 0.6411242727672144 21 -0.33795928955078125 8 Unmodified _DWEEKRHFR_ ENSG00000015479|ENST00000394805|MATR3 1.0714618166137932 0.3428945748894048 1 W 1 8 6.9897 0 0 0.537 0 0 129.98825250978604 982.5348546052264 1112.5231071150124 0 0 0 0 0 0 0 0 0 + W 0.537 + + 10 + NaN NaN 110640.8 NaN 10756 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13766 61.344 NaN 214430 35 0 21213 0.261 + 3842 EPIFEDVMM 9 67 571.7420506358112 NaN 0 571.739501953125 PEAK HCD FTMS 0 0 0 13757 77113.7890625 1 0 0 9 2 Oxidation (M) _EPIFEDVM(Oxidation (M))M(Oxidation (M))_ ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion 48.345845343767074 0.05150985380647864 1 R{M(Oxidation (M))|F}EDV{M(Oxidation (M))|F} 6 4 25.979 0 0 2.2759 0 0 183.06136552640822 162.02280603580314 345.0841715622114 0 0 0 0 0 1.3494850021680094 0 0 0 R{M(Oxidation (M))|F}EDV{M(Oxidation (M))|F} 2.2759 - 88 + NaN NaN 118499.8 NaN 10757 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13767 61.348 NaN 238790 35 0 26139 0.261 + 25153 SAIITEEML 9 68 511.7574890731431 1021.5004252130863 2 511.7575988769531 MULTI HCD FTMS 0 0 0 13757 29807.69140625 0.5838699345397028 -1 0.01956939697265625 10 Oxidation (M) _SAIITEEM(Oxidation (M))L_ ENSG00000261150|ENST00000615648|EPPK1 47.748688679222035 0.03472022231463587 1 {I|L}TEE{M(Oxidation (M))|F}{I|L} 6 3 46.38 0 0 4.5404 0 0 271.15336806465 0 271.15336806465 0 39.39055965521284 0 0 0 1.774227503252014 0 0.3054621874040891 0 + {I|L}TEE{M(Oxidation (M))|F}{I|L} 4.5404 + + 83 NaN NaN 132445.8 NaN 10758 3007 13757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13769 61.352 NaN 4259500 35 0 520200 0.327 + 2886 DYSPYFKTI 9 120 567.2793386389775 1132.544124344755 2 567.2791137695312 MULTI HCD FTMS 0 0 0 13768 2620283.5 0.014871615654598123 -15 0.421539306640625 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 1 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 117.68 0 0 10.391 10.391 91.463 0 0 0 4.916440611282624 4.916440611282624 4.916440611282624 4.916440611282624 0 3.004432191740108 2 2.052887198244136 0.5044321917401079 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}TK{I|L};[PS]YDY{M(Oxidation (M))|F}KT{I|L};{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}KT{I|L};[PS]YDY{M(Oxidation (M))|F}TK{I|L} 10.391;9.9566;8.8703;8.06;6.9737;6.6178;5.5315;5.2921;4.9882;4.2059 +;+;-;-;-;-;-;-;-;- + 2409 + NaN NaN 741707.5 NaN 10759 3008 13768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13770 61.357 NaN 384800 35 0 25192 0.261 + 34581 YPNERFELL 9 82 590.8033312028755 1179.5921094725509 2 590.8035888671875 MULTI HCD FTMS 0 0 0 13768 192832.078125 0.9653465602108591 4 -0.11439132690429688 2 Unmodified _YPNERFELL_ ENSG00000163960|ENST00000296328|UBXN7 40.72490554402381 0.06201705472789164 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NN[NG]{M(Oxidation (M))|F}E{I|L}{I|L} 10 3 + 42.29 0 0 3.5851 3.5851 83.332 0 0 0 2.5036109816090004 18.607770283605994 2.5036109816090004 8.891660843645326 0 1.0044321917401078 1.3979400086720375 0 0.6382104921644451 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NN[NG]{M(Oxidation (M))|F}E{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HV]QA[HC]{I|L}{I|L};[YQ][DP]R{M(Oxidation (M))|F}E{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[DP]R{M(Oxidation (M))|F}E{I|L}{I|L};[NP]YER{M(Oxidation (M))|F}E{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NN[NG]{M(Oxidation (M))|F}{I|L}E{I|L};[YQ][DP]R{M(Oxidation (M))|F}{I|L}E{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[DP]R{M(Oxidation (M))|F}{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HV]QA{I|L}[HC]{I|L};[YQ]{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{I|L}{I|L} 3.5851;2.8314;2.7086;2.6698;2.2848;2.2531;2.0221;1.9833;1.9713;1.9317 -;-;-;-;-;-;-;-;-;- 945 NaN NaN 141580.2 NaN 10760 3008 13768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13771 61.361 NaN 129620 35 0 8766.7 0.262 -1 MPDLDLHL 8 54 485.2389979417569 968.4634429503138 2 485.2390441894531 MULTI HCD FTMS 0 0 0 13768 32771.046875 0.38562034061723244 10 -0.18779373168945312 3 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 30.224811164608877 0.3565035853404968 1 {I|L}H{I|L} 3 -1 33.188 0 0 3.4268 0 0 587.2273724411032 0 587.2273724411032 0 26.197887582883936 0 0 0 1 0 0 0 {I|L}H{I|L} 3.4268 + + 31 NaN NaN 105908.4 NaN 10761 3008 13768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13772 61.364 NaN 102980 35 0 6657.9 0.261 + 7375 FVGLHCGRV 9 49 494.2613958237824 NaN 0 494.2715148925781 PEAK HCD FTMS 0 0 0 13768 6873.00244140625 1 0 0 4 Unmodified _FVGLHCGRV_ REV__ENSG00000104812|ENST00000323798|GYS1;REV__ENSG00000111713|ENST00000261195|GYS2;REV__nc|ENSG00000104812|P13807-2|GYS1 8.593279151180031 0.2536050107310812 1 S 1 -1 4.6041 0 0 0.46671 0 0 131.07600102080852 765.3826387994749 896.4586398202835 0 0 0 0 0 0 0 0 0 S 0.46671 - 30 + NaN NaN 95118.9 NaN 10762 3008 13768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13773 61.367 NaN 88884 35 0 5717.9 0.261 + 34118 YNRWMCYDE 9 42 640.2476652839883 NaN 0 639.9309692382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YNRWMCYDE_ REV__ENSG00000153147|ENST00000283131|SMARCA5 4.3292370932331545 0.2742679634796037 1 Y 1 -1 2.7642 0 0 0.21621 0 0 592.1989916013766 520.2065523736936 1112.4055439750703 0 0 0 0 0 0 0 0 0 Y 0.21621 + + 1 + NaN NaN 99077.2 NaN 10763 3008 13768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13775 61.372 NaN 1565900 35 0 196060 0.327 + 13299 KYMDVQFDF 9 91 604.7680796891424 1207.5216064450847 2 604.7686157226562 MULTI HCD FTMS 0 0 0 13774 950243.0625 0.17947774993226448 21 -0.3107566833496094 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 84.5221896805406 0.004669506596793478 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 81.18 0 0 6.7228 6.7228 85.093 0 0 0 1.5051499783199063 6.094405869988378 1.5051499783199063 1.5051499783199063 0 2.305462187404089 0 1.0010912013506126 0.7302046884880937 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VDYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.7228;6.5982;6.5559;6.3575;5.9603;5.9021;5.8356;5.7934;5.7716;5.5949 +;-;-;-;-;-;-;-;-;- + 3023 NaN NaN 336726.1 NaN 10764 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13776 61.376 NaN 341990 35 0 34962 0.261 + 18159 MPDGQFKDISL 11 78 625.8080112008108 1249.6014694684216 2 625.8081665039062 MULTI HCD FTMS 0 0 0 13774 212115.203125 0.45970208195468826 4 -0.11751556396484375 2 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 53.7980654928069 0.06582189813508678 1 [{M(Oxidation (M))|F}V]{I|L}SK{M(Oxidation (M))|F}MQ 8 9 54.347 0 0 4.3492 0 0 0 266.07834802799067 266.07834802799067 17.665025357721547 0 0 0 0 0.8252574989159953 2 0 0 [{M(Oxidation (M))|F}V]{I|L}SK{M(Oxidation (M))|F}MQ 4.3492 - 487 + NaN NaN 131151.2 NaN 10765 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13777 61.38 NaN 1425300 35 0 96343 0.261 + 20276 NYLVLPNRI 9 104 551.3246395932935 1100.6347262533868 2 551.32470703125 MULTI HCD FTMS 0 0 0 13774 229369.828125 0.395290620016008 -2 0.05564117431640625 3 Unmodified _NYLVLPNRI_ ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2 43.85829265575387 0.04763305254408404 1 [YN]{I|L}V{I|L} 5 4 59.397 0 0 5.3967 0 0 0 495.26894121399374 495.26894121399374 45.42649237128066 0 0 0 0 1.5 1.6989700043360187 0 0.6694451763165201 + [YN]{I|L}V{I|L} 5.3967 + + 1982 NaN NaN 302007.8 NaN 10766 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13778 61.383 NaN 611720 35 0 89033 0.261 + 29059 TYFRFQEEI 9 79 616.8011937070484 1231.5878344808966 2 616.8011474609375 MULTI HCD FTMS 0 0 0 13774 95693.8671875 0.07078403591022167 21 -0.3107566833496094 4 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 73.1962812333195 0.00805395026373928 1 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 70.374 0 0 5.7141 5.7141 84.13 0 0 0 44.170883486118896 18.304162967199034 18.304162967199034 3.2390874094431865 0 2.4802046884880937 2 1.0189301784845295 0.3252574989159953 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}RQ{M(Oxidation (M))|F}EE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}R[AG]{M(Oxidation (M))|F}EE{I|L};{[QN]|[E{I|L}]|[KN]}E[VP]{M(Oxidation (M))|F}QQ{[QD]|[EN]|[WG]|[KD]|[RS]};EE{I|L}[VP]{M(Oxidation (M))|F}QQ{[QD]|[EN]|[WG]|[KD]|[RS]};{[QN]|[E{I|L}]|[KN]}E[VP]{M(Oxidation (M))|F}[AG]Q{[QD]|[EN]|[WG]|[KD]|[RS]};{[QN]|[E{I|L}]|[KN]}E[VP]{M(Oxidation (M))|F}Q[AG]{[QD]|[EN]|[WG]|[KD]|[RS]};EE{I|L}[VP]{M(Oxidation (M))|F}[AG]Q{[QD]|[EN]|[WG]|[KD]|[RS]};EE{I|L}[VP]{M(Oxidation (M))|F}Q[AG]{[QD]|[EN]|[WG]|[KD]|[RS]} 5.7141;5.4511;4.9664;4.7034;1.3288;1.2174;0.58467;0.58467;0.47324;0.47324 +;-;-;-;-;-;-;-;-;- + 468 + NaN NaN 173191.2 NaN 10767 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13779 61.387 NaN 320900 35 0 41688 0.261 + 34342 YPEEVSSMVL 10 51 585.2732758086778 1168.5319986841555 2 585.2740478515625 MULTI HCD FTMS 0 0 0 13774 101408.2734375 0.4556922230476944 -2 0.05564117431640625 5 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 47.748688679222035 0.08597705450879027 1 SS{M(Oxidation (M))|F}V{I|L} 5 5 60.701 0 0 5.1946 0 0 617.2695972501263 0 617.2695972501263 0 55.21652514092061 0 0 0 1.8494850021680094 0 0.4247425010840047 0 + SS{M(Oxidation (M))|F}V{I|L} 5.1946 + + 470 NaN NaN 134884 NaN 10768 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13780 61.39 NaN 274440 35 0 79892 0.261 -1 KYAMMFAEL 9 72 560.264004709818 1118.5134564864359 2 560.2642822265625 MULTI HCD FTMS 0 0 0 13774 43470.82421875 0.07892393372385294 23 -0.3358802795410156 6 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 1 {[CP]|[EA]}[{I|L}P]DD{M(Oxidation (M))|F}AE{I|L} 10 -1 + 40.775 0 0 3.6455 3.6455 59.731 0 0 0 0 7.555358961449841 0 0 0 0.7302046884880937 0 0.3807196863200844 0 {[CP]|[EA]}[{I|L}P]DD{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[PA]DD{M(Oxidation (M))|F}AE{I|L} 3.6455;3.6455 -;- 151 NaN NaN 124933.4 NaN 10769 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13781 61.393 NaN 255090 35 0 30870 0.262 + 4236 EVFFSEKIYKL 11 48 468.25860755949367 1401.753993278681 3 468.2585754394531 MULTI HCD FTMS 0 0 0 13774 53590.58203125 0.6142217301392512 1 -0.03609466552734375 7 Unmodified _EVFFSEKIYKL_ ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000560033.5_1_15:78834730-78834988:+|nuORF 4.603747607663779 0.39873019341487226 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S 5 6 20.713 0 0 1.4777 0 0 0 789.4505999607273 789.4505999607273 11.249387366082999 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S 1.4777 + + 36 + NaN NaN 117544.9 NaN 10770 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13782 61.397 NaN 296230 35 0 42755 0.261 + 16028 LPSCPFGLCF 10 70 542.2522222058851 1082.4898914785701 2 542.2525024414062 MULTI HCD FTMS 0 0 0 13774 33016.5859375 0.1614356937758687 -3 0.0752105712890625 8 Unmodified _LPSCPFGLCF_ REV__ENST00000525088.5_1_11:67202187-67202637:+|nuORF 34.10243960390752 0.1965851268881605 1 {I|L}PS 3 -1 50.674 0 0 4.6813 0 0 0 782.2976168268186 782.2976168268186 33.01538440272459 0 0 0 0 0.5 1.5228787452803376 0.7742275032520141 0 {I|L}PS 4.6813 + + 47 + NaN NaN 139923.9 NaN 10771 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13783 61.4 NaN 168100 35 0 14838 0.261 + 12927 KYGPVFSF 8 58 472.7474558152772 943.4803586973544 2 472.7477722167969 MULTI HCD FTMS 0 0 0 13774 27084.91015625 0.048090981934416674 16 -0.2379608154296875 9 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 52.268347100219714 0.11372384022409306 1 [YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 0 + 56.93 0 0 6.034 6.034 90.45 0 0 0 5.484550065040281 8.781446971601312 5.484550065040281 16.064921830680703 0 2.25 0 0.805462187404089 0 + + [YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YK]G[VP]AY{M(Oxidation (M))|F};[YK]G{M(Oxidation (M))|F}[VP]S{M(Oxidation (M))|F} 6.034;4.3313;4.2048 +;-;- + 182 + NaN NaN 113451.4 NaN 10772 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13784 61.403 NaN 183020 35 0 19478 0.261 + 12652 KWFFQKLRF 9 58 433.91669708106457 1298.7282618433937 3 433.9169921875 MULTI HCD FTMS 0 0 0 13774 31537.423828125 0.04252651076300043 111 -2.6407508850097656 10 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 7.101721422024254 0.29718071671418667 1 KW 2 7 23.271 0 0 1.7918 0 0 0 981.5323596768234 981.5323596768234 7.786596949921218 0 0 0 0 0.3807196863200844 0 0 0 + KW 1.7918 + + 16 + NaN NaN 113560.9 NaN 10773 3009 13774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13786 61.408 NaN 1100800 35 0 215910 0.327 + 27364 SYSMIVNNL 9 96 528.7551482305643 1055.4957435279284 2 528.7555541992188 MULTI HCD FTMS 0 0 0 13785 357865 0.30730192533309864 -6 0.17042160034179688 1 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 155.02607137521346 3.513045939247001E-06 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 77.582 0 0 7.3503 7.3503 88.76 0 0 0 5.558933348155222 42.8046442003941 5.558933348155222 7.223323745606564 0 2.5189301784845295 0 1.2856668758921828 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};[YV][{M(Oxidation (M))|F}T]SVNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};[YV][{M(Oxidation (M))|F}T]SVNGG{I|L};[YV][{M(Oxidation (M))|F}T]SVGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SVNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};[YT][{M(Oxidation (M))|F}V]SVNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SVGGN{I|L} 7.3503;6.6659;6.4779;6.4779;5.7935;5.7935;5.7022;5.2785;5.278;4.8298 +;-;-;-;-;-;-;-;-;- + 1038 NaN NaN 255594.1 NaN 10774 3010 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13787 61.413 NaN 217920 35 0 33894 0.261 + 9354 HPSFPEVSF 9 59 523.7507281710383 1045.4869034088765 2 523.751220703125 MULTI HCD FTMS 0 0 0 13785 76453.8828125 0.2993490675304736 -2 0.055637359619140625 2 Unmodified _HPSFPEVSF_ ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR 54.773552608820026 0.024892918755467567 1 S{[ES]|[DT]|[{I|L}C]}[EP]VS{M(Oxidation (M))|F} 8 3 45.45 0 0 4.3473 0 0 165.0784479772862 0 165.0784479772862 0 40.38872836444014 0 0 0 0.8807196863200843 0 1.1237125054200234 0 S{[ES]|[DT]|[{I|L}C]}[EP]VS{M(Oxidation (M))|F} 4.3473 - 66 + NaN NaN 114439.2 NaN 10775 3010 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13788 61.416 NaN 911490 35 0 98992 0.261 + 26725 SYDPLYYIN 9 92 574.26863751012 1146.52272208704 2 574.2682495117188 MULTI HCD FTMS 0 0 0 13785 329594.625 0.05980329638387375 -13 0.36029052734375 3 Unmodified _SYDPLYYIN_ REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1 32.30548876998284 0.10066689432505688 1 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 7 -1 59.6 0 0 5.1984 0 0 292.0695153773896 0 292.0695153773896 0 -0.6335491125370396 -0.6335491125370396 0 0 2.110924374808178 0 1.4802046884880937 0 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 5.1984 - 391 NaN NaN 218625.7 NaN 10776 3010 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13789 61.419 NaN 476770 35 0 80770 0.261 + 29060 TYFRFQEEI 9 73 616.8011937070484 1231.5878344808966 2 616.8011474609375 MULTI HCD FTMS 0 0 0 13785 96400.03125 0.07130638017143298 22 -0.2997856140136719 4 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 69.33821966488729 0.009302356455414924 1 {M(Oxidation (M))|F}QEE{I|L} 5 4 44.605 0 0 3.6218 0 0 567.2816639630875 0 567.2816639630875 0 7.878355373048805 0 0 0 0.9634679910804405 0 0.4247425010840047 0 + {M(Oxidation (M))|F}QEE{I|L} 3.6218 + + 140 NaN NaN 164185.1 NaN 10777 3010 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13790 61.423 NaN 86340 35 0 7632.3 0.263 + 7376 FVGSPAYLI 9 47 483.76629638671875 NaN 0 483.76629638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FVGSPAYLI_ ENSG00000162461|ENST00000294454|SLC25A34 12.531546534597751 0.23452071659215576 1 {I|L} 1 8 8.7371 0 0 0.90492 0 0 131.09536959328562 718.3178630441187 849.4132326374042 0 0 0 0 0 0.3252574989159953 0 0 0 + {I|L} 0.90492 + + 4 + NaN NaN 95639.2 NaN 10778 3010 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13791 61.426 NaN 57430 35 0 10536 0.261 -1 EERGLMSQPLM 11 39 436.2099609375 NaN 0 436.2099609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _EERGLM(Oxidation (M))SQPLM_ ENSG00000120949|ENST00000263932|TNFRSF8;nc|ENSG00000120949|P28908-3|TNFRSF8 1.4551175022131473 0.3379923941668102 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94172.6 NaN 10779 3010 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13793 61.431 NaN 6373700 35 0 664280 0.327 + 33090 YDSCCVIDKIT 11 123 439.5336217219572 1315.5790357660717 3 439.5340270996094 MULTI HCD FTMS 0 0 0 13792 3260730 1 0 0 1 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 59.17704102725264 0.04373365728438054 1 {[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD 11 7 + 71.151 0 0 5.4083 5.4083 84.277 0 0 0 11.163745471406273 24.418954370983002 11.163745471406273 4.771212547196626 0 1 2 1.4731975075880328 0 {[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]ST{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]T{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PS{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]T{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]TS{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]TP{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[QS]|[NT]}KT{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]PST{I|L}YD 5.4083;5.0457;4.999;4.9516;4.9118;4.8168;4.683;4.5889;4.5854;4.5423 -;-;-;-;-;-;-;-;-;- 4912 NaN NaN 880267.6 NaN 10780 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13794 61.435 NaN 2883400 35 0 321240 0.261 + 27063 SYMGHFDLL 9 117 549.7497688734081 1097.4849848136162 2 549.7503662109375 MULTI HCD FTMS 0 0 0 13792 2772427.75 0.2676544297697021 25 -0.3676261901855469 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 128.3654064809346 0.00070410514679239 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 58.113 0 0 5.2951 5.2951 87.973 0 0 0 1.519178048740244 25.771147014961493 1.519178048740244 10.88090859114196 0 2.1435078169319297 0 1.035666875892183 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHVE{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YR]{M(Oxidation (M))|F}SY{I|L} 5.2951;4.3037;4.1071;3.7695;3.435;3.2903;3.0002;2.9755;2.7267;2.4305 +;-;-;-;-;-;-;-;-;- + 3519 NaN NaN 516302.8 NaN 10781 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13795 61.439 NaN 1381600 35 0 69642 0.261 + 2519 DSNLKIESME 10 118 583.2742064420759 1164.5338599509516 2 583.2740478515625 MULTI HCD FTMS 0 0 0 13792 555599.9375 0.1783800347577839 -12 0.33077239990234375 3 Unmodified _DSNLKIESME_ REV__nc|ENSG00000069869|P46934-2|NEDD4;REV__nc|ENSG00000069869|P46934-3|NEDD4;REV__nc|ENSG00000069869|P46934|NEDD4 29.84058131909904 0.23356904650364865 1 DYSEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 105.46 0 0 9.056 9.056 96.809 0 0 0 80.52767656524125 17.86098023303616 17.86098023303616 27.588191538938602 0 2.473197507588033 2 1.9336068845642203 0 DYSEY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};DYS{M(Oxidation (M))|F}[YE]KT{I|L};DYYA[YE]KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L};DYS{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T][TA]T{I|L};DYYA[{M(Oxidation (M))|F}T][TA]T{I|L};[{I|L}T]K{M(Oxidation (M))|F}[YE]SYD;[{I|L}T]K{M(Oxidation (M))|F}[YE]YSD 9.056;6.687;6.6676;5.2124;5.0342;4.9048;3.4496;0.87278;0.78521 -;-;-;-;-;-;-;-;- 2644 + NaN NaN 300345.4 NaN 10782 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13796 61.442 NaN 483370 35 0 93409 0.261 -1 VYPLMKEYF 9 83 603.2993101230447 1204.5840673128894 2 603.2994995117188 MULTI HCD FTMS 0 0 0 13792 319165.15625 0.07605872609411293 101 -2.37677001953125 4 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 26.268140514670165 0.13340543277302316 1 DY{M(Oxidation (M))|F} 3 -1 32.096 0 0 2.6645 0 0 761.4103871076187 0 761.4103871076187 0 0.056584229283842546 0 0 0 0.9247425010840047 0 0.3807196863200844 0 DY{M(Oxidation (M))|F} 2.6645 - 266 NaN NaN 155853.2 NaN 10783 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13797 61.445 NaN 1313700 35 0 262790 0.261 + 33111 YDTQYHAWC 9 89 593.7351433434706 1185.455733753741 2 593.7349243164062 MULTI HCD FTMS 0 0 0 13792 597282.0625 0.24005942081162254 -12 0.33077239990234375 5 Unmodified _YDTQYHAWC_ REV__ENSG00000167291|ENST00000310924|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-2|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F}M 2 -1 35.93 0 0 3.0309 0 0 0 904.3450685401269 904.3450685401269 22.875914648099954 0 0 0 0 0.4247425010840047 2 0 0 {M(Oxidation (M))|F}M 3.0309 - 145 + NaN NaN 282397.7 NaN 10784 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13798 61.449 NaN 325110 35 0 28008 0.261 + 16817 LYECTGQFDF 10 58 611.7578938075267 1221.5012346818532 2 612.260009765625 MULTI HCD FTMS 0 0 0 13792 132864.84375 0.3675916557232352 24 -0.34490966796875 6 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 28.494509381512117 0.24525010509582015 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 58.906 0 0 4.8224 4.8224 83.773 0 0 0 4.476664759506974 37.49159686636801 4.476664759506974 6.00833760139686 0 2.3494850021680094 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG][MT][DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]} 4.8224;4.3305;4.0722;3.8382;3.5803;3.3125;3.088;0.83239;0.48204;0.34051 -;-;-;-;-;-;-;-;-;- 320 NaN NaN 129765.4 NaN 10785 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13799 61.452 NaN 593520 35 0 63082 0.261 + 2769 DYCLENKTL 9 86 578.2705714487314 1154.5265899642627 2 578.2716064453125 MULTI HCD FTMS 0 0 0 13792 167700.109375 0.10716682251217528 -11 0.30789947509765625 7 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 55.50274090549119 0.023872834264864425 1 DYS 3 7 55.177 0 0 4.7792 0 0 0 786.3810645832687 786.3810645832687 9.55513970213957 0 0 0 0 0.7742275032520141 2 0.4247425010840047 0 DYS 4.7792 - 114 + NaN NaN 175815 NaN 10786 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13800 61.455 NaN 930030 35 0 157020 0.261 -1 MTDMFLLNL 9 103 557.2682564602909 1112.5219599873817 2 557.7841796875 MULTI HCD FTMS 0 0 0 13792 39240.328125 0.5595068086393816 -1 0.0228271484375 8 Oxidation (M) _MTDM(Oxidation (M))FLLNL_ ENSG00000173585|ENST00000357632|CCR9;nc|ENSG00000173585|P51686-2|CCR9 19.256988751693697 0.19398022840297344 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 31.254 0 0 2.8093 0 0 0 744.3778309192754 744.3778309192754 -1.2913676671290943 0 -1.2913676671290943 0 0 0 1.6989700043360187 0.7302046884880937 0 {[YD]|[{M(Oxidation (M))|F}M]}S 2.8093 - 1246 NaN NaN 226097.4 NaN 10787 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13801 61.459 NaN 179830 35 0 17881 0.261 + 16432 LSMGSASYYDF 11 51 620.7631415492712 1239.5117301653422 2 620.7636108398438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LSMGSASYYDF_ REV__ENSG00000157103|ENST00000287766|SLC6A1 8.745405648335112 0.3805662881914433 1 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 54.724 0 0 4.415 0 0 280.1059742658219 0 280.1059742658219 0 44.26677000861204 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.415 - 149 NaN NaN 115966.7 NaN 10788 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13802 61.462 NaN 192300 35 0 12483 0.261 + 7842 FYRSYFSQF 9 67 622.790283203125 NaN 0 622.790283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _FYRSYFSQF_ ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK 35.61225514009592 0.09234706881258196 1 QS{M(Oxidation (M))|F} 3 7 28.5 0 0 2.2918 0 0 165.08593133907362 713.3040255182249 878.3899568572986 0 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 QS{M(Oxidation (M))|F} 2.2918 - 37 + NaN NaN 112200.2 NaN 10789 3011 13792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13804 61.467 NaN 1438900 35 0 309170 0.327 + 16034 LPSEDPYQL 9 76 531.2613947767766 1060.508236620353 2 531.26123046875 MULTI HCD FTMS 0 0 0 13803 1339269.75 1 0 0 1 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 56.17704186161178 0.022929533404884107 1 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L} 9 2 + 62.602 0 0 5.9031 5.9031 85.483 0 0 0 3.217196696094433 42.68089865121331 3.217196696094433 5.568109453757657 0 1.6549471895720984 0 0.6382104921644451 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L};[VP]{[ET]|[MV]}DPYQ{I|L};{[QN]|[E{I|L}]|[KN]}[PS]DPY[AG]{I|L};[VP]{[ET]|[MV]}DPY[AG]{I|L};[VP][EP]{[ES]|[DT]|[{I|L}C]}YQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{[ES]|[DT]|[{I|L}C]}YQ{I|L};{[WT]|[RM]}[RD][DG]AQ{I|L} 5.9031;5.378;5.0348;4.1507;2.8799;2.6666;1.2359 -;-;-;-;-;-;- 464 NaN NaN 301650.8 NaN 10790 3012 13803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13805 61.471 NaN 1337900 35 0 243950 0.261 + 24347 RYIDRIHIFF 10 78 460.59069929921907 1378.7502684978572 3 460.5908508300781 MULTI HCD FTMS 0 0 0 13803 660603.125 0.09569633275163972 26 -0.39176177978515625 2 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 19.986897341741983 0.32416132266773673 1 R[H{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 43.416 0 0 3.149 0 0 547.2757421361368 0 547.2757421361368 0 36.42667503568731 0 0 0 1.5 0 0 0 + R[H{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.149 + + 48 NaN NaN 290709.8 NaN 10791 3012 13803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13806 61.475 NaN 535110 35 0 86170 0.261 + 5717 FPAGYMYPSM 10 88 598.243611247786 1194.472669562372 2 598.244384765625 MULTI HCD FTMS 0 0 0 13803 275447.78125 0.7640684685203232 -8 0.22917556762695312 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 1 [YV]{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F}YPS 8 6 61.846 0 0 5.1777 0 0 0 162.0259739356192 162.0259739356192 45.375240784723374 0 0 0 0 2.024227503252014 1.5228787452803376 0 0 [YV]{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F}YPS 5.1777 - 607 NaN NaN 176612.2 NaN 10792 3012 13803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13807 61.478 NaN 295730 35 0 14315 0.261 + -1 SYSMDGFKK 9 67 539.7465017902141 1077.478450647228 2 540.2484741210938 MULTI HCD FTMS 0 0 0 13803 70734.1953125 0.4339242910898448 1 -0.02266693115234375 4 Oxidation (M) _SYSM(Oxidation (M))DGFKK_ REV__ENSG00000111907|ENST00000534000|TPD52L1;REV__ENST00000530868.1_1_6:125552357-125584105:+|nuORF;REV__nc|ENSG00000111907|Q16890-2|TPD52L1;REV__nc|ENSG00000111907|Q16890-5|TPD52L1;REV__RNF217-TPD52L1|1|fusion;REV__RNF217-TPD52L1|2|fusion 18.1463463914782 0.20357593197100715 1 AV{I|L}{M(Oxidation (M))|F}S[MT] 7 -1 23.677 0 0 2.1974 0 0 310.1306324689469 0 310.1306324689469 0 8.130551101096726 0 0 0 0.9247425010840047 0 0 0 AV{I|L}{M(Oxidation (M))|F}S[MT] 2.1974 - 227 NaN NaN 127131.3 NaN 10793 3012 13803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13808 61.481 NaN 82194 35 0 4477.5 0.261 -1 MDMCFGCMIC 10 43 629.690673828125 NaN 0 629.690673828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),3 Oxidation (M) _M(Oxidation (M))DM(Oxidation (M))C(Carbamidomethyl (C))FGCM(Oxidation (M))IC_ ENST00000256108.9_1_8:82571492-82571558:-|nuORF 0 0.34018428902965525 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.5559 0 0 231.88742919746238 875.3747652643186 1107.262194461781 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.5559 + + 2 + NaN NaN 89401.8 NaN 10794 3012 13803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13809 61.485 NaN 123500 35 0 6347.1 0.262 + 26901 SYKTQDATL 9 62 513.7593994140625 NaN 0 513.7593994140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SYKTQDATL_ REV__ENSG00000164715|ENST00000297293|LMTK2 9.38312468134398 0.24977752951804 1 K 1 -1 9.2917 0 0 0.90607 0 0 665.2666157385257 229.1193789117797 894.3859946503054 0 0 0 0 0 0.3807196863200844 0 0 0 K 0.90607 + + 6 + NaN NaN 104337.3 NaN 10795 3012 13803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13811 61.489 NaN 96470000 35 0 12939000 0.327 + 2887 DYSPYFKTI 9 110 567.2793386389775 1132.544124344755 2 567.2798461914062 MULTI HCD FTMS 0 0 0 13810 104467752 0.5929145667038984 -10 0.2880363464355469 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.23 0 0 10.262 10.262 89.235 0 0 0 0.40939380995489216 0.40939380995489216 0.40939380995489216 0.40939380995489216 0 2.7302046884880937 2 2.635151878060192 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}T{I|L}K 10.262;10.226;9.1964;8.5653;8.3208;8.144;7.4992;7.2548;6.8934;6.4468 +;+;-;-;-;-;-;-;-;- + 3368 NaN NaN 953275.9 NaN 10796 3013 13810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13812 61.494 NaN 876650 35 0 133650 0.261 + 10654 IPVESEVNL 9 81 500.2717266539479 998.5289003746958 2 500.2716369628906 MULTI HCD FTMS 0 0 0 13810 773587.625 0.8616433776882755 2 -0.02327728271484375 2 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 114.6490535036381 0.0021834323520089267 1 ESEVN{I|L} 6 3 67.229 0 0 6.7328 0 0 309.20466811347814 0 309.20466811347814 0 54.46444654504422 0 0 0 1.860924374808178 0 1.4802046884880937 0.3807196863200844 + ESEVN{I|L} 6.7328 + + 480 NaN NaN 220319.6 NaN 10797 3013 13810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13813 61.497 NaN 1262500 35 0 220570 0.261 + -1 DKSSMTECTL 10 93 586.2529085149123 1170.4912640966245 2 586.2530517578125 MULTI HCD FTMS 0 0 0 13810 217974.703125 0.22045097380096276 -9 0.2518424987792969 3 Carbamidomethyl (C) _DKSSMTEC(Carbamidomethyl (C))TL_ REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF 21.536976647645854 0.3096624038397699 1 DYS 3 -1 42.14 0 0 3.6002 0 0 0 802.3531588190061 802.3531588190061 15.713337517843655 0 0 0 0 0 1.5228787452803376 0.8494850021680094 0 DYS 3.6002 - 691 + NaN NaN 273856.7 NaN 10798 3013 13810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13814 61.501 NaN 469520 35 0 34209 0.261 + 34582 YPNERFELL 9 97 590.8033312028755 1179.5921094725509 2 590.8046264648438 MULTI HCD FTMS 0 0 0 13810 94170.328125 0.47143091135733034 9 -0.08782958984375 4 Unmodified _YPNERFELL_ ENSG00000163960|ENST00000296328|UBXN7 9.5439744041441 0.27789851728676895 1 {[HG]|PP}VS[YE]{M(Oxidation (M))|F}KT{I|L} 10 6 + 28.205 0 0 2.3911 2.3911 80.252 0 0 0 2.7102154270018275 2.4029530315658576 2.4029530315658576 3.1600719761070124 0 0.4247425010840047 0 0.7302046884880937 0 {[HG]|PP}VS[YE]{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[HG]|PP}{[NV]|[RG]}Y{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[HG]|PP}{[NV]|[RG]}{I|L}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[HG]|PP}{[NV]|[RG]}Y{I|L}{I|L};[RH][Y{M(Oxidation (M))|F}]{[ES]|[DT]|[{I|L}C]}KT{I|L};{[HG]|PP}V[Y{M(Oxidation (M))|F}]{[ES]|[DT]|[{I|L}C]}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[HG]|PP}{[NV]|[RG]}{I|L}Y{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{[{M(Oxidation (M))|F}H]|[RQ]}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 2.3911;2.1232;1.2344;1.0874;0.47645;0.43766;0.19853;0.19395 -;-;-;-;-;-;-;- 265 + NaN NaN 155649.6 NaN 10799 3013 13810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13816 61.505 NaN 1323200 35 0 136300 0.411 + 13300 KYMDVQFDF 9 101 604.7680796891424 1207.5216064450847 2 604.7685546875 MULTI HCD FTMS 0 0 0 13815 899970.6875 0.16998252381084145 26 -0.4086265563964844 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 125.0377797344192 0.0009059125702818869 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 84.675 0 0 7.0123 7.0123 87.052 0 0 0 2.051821014592363 48.743449014905146 2.051821014592363 4.640697330661382 0 2.305462187404089 0 0.9698565171985375 1.110924374808178 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.0123;6.6279;6.5132;6.4407;6.2497;6.157;5.8654;5.7507;5.7183;5.6782 +;-;-;-;-;-;-;-;-;- + 4847 NaN NaN 483959 NaN 10800 3014 13815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13818 61.513 NaN 5841500 35 0 1077100 0.327 + 13067 KYLDVKFEYL 10 117 439.90766346480865 1316.701160994626 3 439.90777587890625 MULTI HCD FTMS 0 0 0 13817 1261139.75 0.49980481634010226 3 -0.02745819091796875 1 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 37.250883937326 0.16926328642339214 1 {[YD]|[{M(Oxidation (M))|F}M]}P{I|L}{I|L}PV[QP]Y{I|L} 11 7 + 57.54 0 0 4.37 4.37 88.056 0 0 0 17.670304092308946 11.939619816497746 11.939619816497746 18.098269928065385 0 1.3494850021680094 2 1.336696871556164 0 {[YD]|[{M(Oxidation (M))|F}M]}P{I|L}{I|L}PV[QP]Y{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YE]VD{I|L}KY{I|L};[DP]Y{I|L}{I|L}PV[QP]Y{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}T]E[{M(Oxidation (M))|F}E]KY{I|L};[YK]{I|L}DV[{M(Oxidation (M))|F}E]KY{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}T]EK[{M(Oxidation (M))|F}E]Y{I|L};[YK]{I|L}DVK[{M(Oxidation (M))|F}E]Y{I|L};[YK]VVE[{M(Oxidation (M))|F}E]KY{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YV]E[{M(Oxidation (M))|F}E]KY{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YE]VD{I|L}YK{I|L} 4.37;2.9955;2.9697;2.8241;2.777;2.7087;2.6617;2.5353;2.4617;2.4279 -;-;-;-;-;-;+;-;-;- + 2955 NaN NaN 898005.2 NaN 10801 3015 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13819 61.517 NaN 188180 35 0 13969 0.261 + 33093 YDSFKNYLIS 10 59 625.3074340820312 NaN 0 625.3074340820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YDSFKNYLIS_ REV__ENSG00000168263|ENST00000382082|KCNV2 3.944395688203298 0.33680843299986807 1 S{I|L}DK 4 -1 11.771 0 0 0.94274 0 0 130.07651767402496 672.2452486627561 802.3217663367811 0 0 0 0 0 0 0 0 0 S{I|L}DK 0.94274 - 14 + NaN NaN 131870.4 NaN 10802 3015 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13821 61.522 NaN 2020100 35 0 384940 0.326 + 2850 DYLSAMGFVL 10 118 558.2742118650824 NaN 0 558.2742309570312 PEAK HCD FTMS 0 0 0 13820 524434.375 1 0 0 1 Unmodified _DYLSAMGFVL_ REV__ENSG00000172831|ENST00000317091|CES2;REV__ENST00000568470.5_1_16:66969809-66977925:+|nuORF;REV__nc|ENSG00000172831|O00748-2|CES2;REV__nc|ENSG00000172831|O00748-4|CES2;REV__nc|ENSG00000172831|O00748-5|CES2 46.020951573049366 0.10247455346275337 1 TK{M(Oxidation (M))|F}YPS 6 -1 48.484 0 0 4.3502 0 0 131.0946832119924 257.0566449336631 388.1513281456555 0 0 0 0 0 2.1989700043360187 0 0.8921590589602533 0.2614393726401688 TK{M(Oxidation (M))|F}YPS 4.3502 - 1127 + NaN NaN 401873 NaN 10803 3016 13820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13822 61.526 NaN 630400 35 0 108000 0.261 + -1 LYMCMAPIF 9 92 589.2609977886857 NaN 0 589.2611694335938 PEAK HCD FTMS 0 0 0 13820 165128.3125 0.6141317909218406 -2 0.016521453857421875 2 Carbamidomethyl (C),2 Oxidation (M) _LYM(Oxidation (M))C(Carbamidomethyl (C))M(Oxidation (M))APIF_ REV__ENSG00000204701|ENST00000641151|OR2J3 9.347437153973935 0.2499504662953367 1 {I|L}N 2 -1 13.271 0 0 1.128 0 0 165.9878191251667 780.3711339416352 946.3589530668019 0 0 0 0 0 0 0 0 0.3807196863200844 {I|L}N 1.128 - 107 + NaN NaN 184185.8 NaN 10804 3016 13820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13824 61.531 NaN 1274100 35 0 244780 0.327 + 27365 SYSMIVNNL 9 97 528.7551482305643 1055.4957435279284 2 528.7554931640625 MULTI HCD FTMS 0 0 0 13823 911179.25 0.7824378965491702 1 -0.009181976318359375 1 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 155.02607137521346 3.513045939247001E-06 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 76.145 0 0 7.2141 7.2141 89.545 0 0 0 4.309545982072223 46.48649701939571 4.309545982072223 9.208187539523735 0 2.5189301784845295 0 1.0451140161145327 0.6382104921644451 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};[YV][{M(Oxidation (M))|F}T][VS]NN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS]NN{I|L};[YV]PWD[YT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}[KC]N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}[HV]TM;{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}TM 7.2141;6.3417;6.0682;4.8688;4.3769;3.2948;2.2782;1.7247;1.3093;0.28311 +;-;-;-;-;-;-;-;-;- + 1074 NaN NaN 276655.3 NaN 10805 3017 13823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13825 61.535 NaN 403630 35 0 92493 0.261 + 14038 KYVENFGLI 9 78 541.7977298733354 1081.5809068134706 2 541.7981567382812 MULTI HCD FTMS 0 0 0 13823 346522.46875 0.234002212409923 -6 0.10014724731445312 2 Unmodified _KYVENFGLI_ ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF 57.24910588100465 0.021429789259086996 1 [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L} 9 0 + 79.007 0 0 7.3048 7.3048 86.619 0 0 0 4.762036441594191 61.30047129326641 4.762036441594191 2.498774732165998 0 2.4674165578762484 0 0 0.75 + + [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L};[YK]VEGG{M(Oxidation (M))|F}G{I|L}{I|L};[Y{I|L}]{[NV]|[RG]}SG{M(Oxidation (M))|F}G{I|L}{I|L};[YK][TP]SG{M(Oxidation (M))|F}G{I|L}{I|L};[YK][DG]{I|L}G{M(Oxidation (M))|F}G{I|L}{I|L};[Y{I|L}]{[NV]|[RG]}[YQ]G{I|L}{I|L};[YK]VEG{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{I|L};[YK][TP][YQ]G{I|L}{I|L};[Y{I|L}]{[NV]|[RG]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{I|L};[YK][TP]S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{I|L} 7.3048;7.0737;5.5908;4.4362;4.4362;3.6218;3.5068;2.4672;2.0238;0.86925 +;-;-;-;-;-;-;-;-;- + 461 NaN NaN 146632.4 NaN 10806 3017 13823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13827 61.54 NaN 3582900 35 0 399650 0.327 + 2879 DYSFVPEKY 9 120 574.26863751012 1146.52272208704 2 574.2686767578125 MULTI HCD FTMS 0 0 0 13826 1740749.375 0.3158502685023094 -5 0.0507354736328125 1 Unmodified _DYSFVPEKY_ ENSG00000104237|ENST00000220676|RP1 34.40172386719151 0.0910440009062557 1 DSPY{M(Oxidation (M))|F}KT{I|L} 8 7 68 0 0 5.931 0 0 177.04280287910314 0 177.04280287910314 0 8.798793729568857 0 0 0 2.353917193908117 0 1.7856668758921828 0 DSPY{M(Oxidation (M))|F}KT{I|L} 5.931 - 2162 NaN NaN 537803.9 NaN 10807 3018 13826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13828 61.544 NaN 556530 35 0 53436 0.261 + 3943 EQCAEEEKTI 10 95 590.2637182012246 1178.5128834692491 2 590.264404296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _EQCAEEEKTI_ REV__ENSG00000173064|ENST00000682272|HECTD4;REV__ENST00000311694.7_1_12:112687934-112711582:-|nuORF;REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4;REV__nc|ENSG00000173064|Q9Y4D8-3|HECTD4;REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4;REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4;REV__nc|ENSG00000173064|Q9Y4D8|HECTD4 11.494710602746466 0.4035943721457025 1 S[YE]{M(Oxidation (M))|F}K[{I|L}T] 7 -1 42.597 0 0 3.6145 0 0 292.0634604922739 0 292.0634604922739 0 19.92107276150385 0 0 0 2.110924374808178 0 1.3539171939081172 0 S[YE]{M(Oxidation (M))|F}K[{I|L}T] 3.6145 - 187 + NaN NaN 166813.5 NaN 10808 3018 13826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13830 61.549 NaN 3911300 35 0 779100 0.326 -1 YDSCCVIDKIT 11 112 439.5336217219572 1315.5790357660717 3 439.53369140625 MULTI HCD FTMS 0 0 0 13829 964445.6875 0.2957760033796113 8 -0.08901214599609375 1 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 37.250883937326 0.1546552337217693 1 {[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD 11 -1 + 65.372 0 0 4.9691 4.9691 82.665 0 0 0 4.147070268612538 37.1318685302946 4.147070268612538 3.0102999566398054 0 1 2 1.0994850021680094 0 {[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PS{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]T{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}PS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]TS{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]ST{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}PS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}PS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PS{I|L}YD;{[{M(Oxidation (M))|F}C]|[YS]}DP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD 4.9691;4.7403;4.5115;4.209;4.0848;3.9802;3.9802;3.856;3.6272;3.4164 -;-;-;-;-;-;-;-;-;- 1750 NaN NaN 711633.3 NaN 10809 3019 13829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13832 61.555 NaN 3065700 35 0 271020 0.327 + 27064 SYMGHFDLL 9 122 549.7497688734081 1097.4849848136162 2 549.7504272460938 MULTI HCD FTMS 0 0 0 13831 2678336.75 0.2585707402302863 34 -0.6873893737792969 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 103.74828524460852 0.00396301343438984 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L} 9 2 + 62.958 0 0 5.7365 5.7365 90.037 0 0 0 18.80093124670207 6.9923339537769635 6.9923339537769635 16.222368109229457 0 1.7179001828205482 2 0.9634679910804405 0 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}S[QP]WA{I|L};SY{M(Oxidation (M))|F}S{[HG]|PP}[KS]W;SY{M(Oxidation (M))|F}S[QP][{I|L}A]W;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}{[QN]|[E{I|L}]|[KN]}WA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L} 5.7365;4.2584;4.1653;4.1106;3.8363;3.0445;2.9782;2.7092;2.2227;2.0439 -;+;-;-;-;-;-;-;-;- + 3505 + NaN NaN 547089.5 NaN 10810 3020 13831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13833 61.56 NaN 268800 35 0 21902 0.261 + -1 FLFQCVSF 8 86 524.2528076171875 NaN 0 524.2528076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _FLFQC(Carbamidomethyl (C))VSF_ REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF 14.581692164780916 0.38795613832665576 1 SV 2 -1 31.454 0 0 3.0085 0 0 165.07917983222814 691.285602178381 856.3647820106091 0 0 0 0 0 1.4247425010840047 0 0.9247425010840047 0 SV 3.0085 - 92 NaN NaN 138380.2 NaN 10811 3020 13831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13835 61.565 NaN 2666100 35 0 521380 0.327 + 9992 IEMFEEEEM 9 107 593.7351433434706 1185.455733753741 2 593.7349243164062 MULTI HCD FTMS 0 0 0 13834 1357536.25 0.5456205474206453 -2 0.01552581787109375 1 Unmodified _IEMFEEEEM_ REV__ENSG00000196406|ENST00000370515|SPANXD;REV__ENSG00000198021|ENST00000370519|SPANXA1;REV__ENSG00000198573|ENST00000358993|SPANXC;REV__ENSG00000203926|ENST00000370518|SPANXA2 16.942295170755138 0.21397866736869717 1 [YN]{I|L} 3 -1 30.488 0 0 2.5719 0 0 0 792.2427265118066 792.2427265118066 13.42355294484548 0 0 0 0 0 2 0 0.6307196863200843 [YN]{I|L} 2.5719 - 249 NaN NaN 417958 NaN 10812 3021 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13836 61.569 NaN 2311700 35 0 117290 0.261 + 2329 DNADEMIKTL 10 123 583.2742064420759 1164.5338599509516 2 583.2744140625 MULTI HCD FTMS 0 0 0 13834 2048029.75 0.6575371833802186 -2 0.01552581787109375 2 Oxidation (M) _DNADEM(Oxidation (M))IKTL_ tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 45.739877483867886 0.09559676962230333 1 DYSEY{M(Oxidation (M))|F}KT{I|L} 9 5 + 106.9 0 0 9.1796 9.1796 96.518 0 0 0 76.77346719650137 19.198763237279536 19.198763237279536 22.86150500836483 0 2.504432191740108 2 1.979339555460717 0 DYSEY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};DYS{M(Oxidation (M))|F}[YE]KT{I|L};DYYA[YE]KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L};[{I|L}T]K{M(Oxidation (M))|F}[YE]SYD;[HK][RN][YT]D[MT] 9.1796;7.2164;6.9156;5.8006;5.5761;1.2386;0.28785 -;-;-;-;-;-;- 2955 + NaN NaN 450308.4 NaN 10813 3021 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13837 61.573 NaN 193520 35 0 11892 0.261 + 3068 EAFYRQNLPN 10 75 626.3078002929688 NaN 0 626.3078002929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EAFYRQNLPN_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 8.155526934196011 0.33320428830121973 1 {I|L}DK{M(Oxidation (M))|F} 4 10 15.433 0 0 1.2341 0 0 219.12630935404064 525.1777437799436 744.3040531339843 0 0 0 0 0 0 0 0 0 {I|L}DK{M(Oxidation (M))|F} 1.2341 - 136 + NaN NaN 116066.8 NaN 10814 3021 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13839 61.577 NaN 2330300 35 0 446290 0.327 + 2849 DYLSAMGFVL 10 121 558.2739695445233 1114.5333861558465 2 558.2717895507812 MULTI HCD FTMS 0 0 0 13838 326307.46875 0.5367096671526358 -4 0.0370941162109375 1 Unmodified _DYLSAMGFVL_ REV__ENSG00000172831|ENST00000317091|CES2;REV__ENST00000568470.5_1_16:66969809-66977925:+|nuORF;REV__nc|ENSG00000172831|O00748-2|CES2;REV__nc|ENSG00000172831|O00748-4|CES2;REV__nc|ENSG00000172831|O00748-5|CES2 46.020951573049366 0.09315764076686055 1 DYS{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}KT{I|L} 9 -1 + 78.497 0 0 7.043 7.043 86.54 0 0 0 3.4377143879388257 3.4377143879388257 3.4377143879388257 3.4377143879388257 0 2.385151878060192 2 1.4802046884880937 0 DYS{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPYEKT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SPY{M(Oxidation (M))|F}KT{I|L};DYSPY{M(Oxidation (M))|F}K[VP];DYS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP];{I|L}TK{M(Oxidation (M))|F}YPD[MT];D[MT]PY{M(Oxidation (M))|F}KT{I|L};{I|L}TK{M(Oxidation (M))|F}YPSYP;DY{I|L}S{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP];[MT]DPY{M(Oxidation (M))|F}KT{I|L} 7.043;6.7346;6.3796;5.9059;5.8348;5.8262;5.8105;5.6454;5.3187;5.0914 -;-;-;-;-;-;-;-;-;- 3718 + NaN NaN 449154 NaN 10815 3022 13838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13840 61.582 NaN 1594000 35 0 164440 0.261 + 2770 DYCLENKTL 9 114 578.2705714487314 1154.5265899642627 2 578.2700805664062 MULTI HCD FTMS 0 0 0 13838 1564851 1 0 0 2 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 55.50274090549119 0.023872834264864425 1 DYSPY{M(Oxidation (M))|F}K 7 6 74.211 0 0 6.4279 0 0 0 251.10173975162346 251.10173975162346 19.52758721629985 0 0 0 0 1.5356668758921828 2 0.4247425010840047 0.23965182871044374 DYSPY{M(Oxidation (M))|F}K 6.4279 - 1678 + NaN NaN 336045.7 NaN 10816 3022 13838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13841 61.585 NaN 434600 35 0 39541 0.261 + 16978 LYIGHLTTL 9 96 515.8001148454115 1029.5856767576229 2 515.7996215820312 MULTI HCD FTMS 0 0 0 13838 210510.546875 0.34135840969003917 -10 0.11049652099609375 3 Unmodified _LYIGHLTTL_ ENSG00000082805|ENST00000360905|ERC1;ENST00000542302.6_1_12:1519571-1599393:+|nuORF;nc|ENSG00000082805|Q8IUD2-3|ERC1 89.42679046578446 0.004540987215715461 1 {I|L}Y{I|L} 3 6 44.45 0 0 4.3173 0 0 0 637.3323185992731 637.3323185992731 20.074615764381814 0 0 0 0 0.8252574989159953 1.6989700043360187 0 0 + {I|L}Y{I|L} 4.3173 + + 407 + NaN NaN 150887.7 NaN 10817 3022 13838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13843 61.59 NaN 814600 35 0 168620 0.327 + 16035 LPSEDPYQL 9 76 531.2613947767766 1060.508236620353 2 531.261962890625 MULTI HCD FTMS 0 0 0 13842 679271.5 0.5071954324362213 11 -0.16316986083984375 1 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 39.94969957227396 0.06557568441294001 1 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L} 9 2 + 59.679 0 0 5.6274 5.6274 86.179 0 0 0 5.2239953007803805 45.68254727757935 5.2239953007803805 8.455364353722011 0 1.5941876774005248 0 0.6139829889124311 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L};[VP]{[ET]|[MV]}DPYQ{I|L};{[QN]|[E{I|L}]|[KN]}[PS]DPY[AG]{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}DPYQ{I|L};[VP]{[ET]|[MV]}DPY[AG]{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}DPY[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{M(Oxidation (M))|F}MYQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}YM{M(Oxidation (M))|F}TQ{I|L};[VP][EP]{[ES]|[DT]|[{I|L}C]}YQ{I|L};[{I|L}P][DP]{[ES]|[DT]|[{I|L}C]}YQ{I|L} 5.6274;4.8301;4.7591;4.3802;3.6323;3.1824;2.4761;2.3989;2.3262;1.8763 -;-;-;+;-;-;-;-;-;- + 301 NaN NaN 199528.7 NaN 10818 3023 13842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13844 61.594 NaN 1293100 35 0 172390 0.261 + 31508 VYGFLRNGF 9 87 536.7825132891246 1071.5504736450491 2 536.781982421875 MULTI HCD FTMS 0 0 0 13842 747280.5625 0.8020332683960701 -10 0.10044479370117188 2 Unmodified _VYGFLRNGF_ ENST00000343327.6_1_9:115030452-115095785:-|nuORF 154.46347324262513 4.107785341423729E-06 1 VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F} 9 0 + 107.67 0 0 10.048 10.048 95.296 0 0 0 88.5235909396512 16.478174818886373 16.478174818886373 11.822581265925436 0 2.6721675119240516 1.6989700043360187 0 0.9674165578762486 + + VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VY{[ET]|[MV]}{I|L}V{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};VYG[WK]Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YV]G{M(Oxidation (M))|F}{I|L}G[RN]{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}GVNG{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}VVANG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG][VS]{M(Oxidation (M))|F}GP{M(Oxidation (M))|F} 10.048;8.9443;7.3052;6.4459;6.2518;6.2502;4.9811;4.766;4.5882;4.368 +;-;+;-;-;-;-;-;-;- + 1699 + NaN NaN 280821.2 NaN 10819 3023 13842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13845 61.598 NaN 162870 35 0 8815.7 0.261 -1 YSDFYPSM 8 56 513.1987915039062 NaN 0 513.1987915039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YSDFYPSM(Oxidation (M))_ ENST00000341618.8_2_21:30547632-30547791:+|nuORF 2.577480529830294 0.38822285293237185 1 K 1 -1 5.4846 0 0 0.5354 0 0 664.1456302847052 229.1192568414672 893.2648871261724 0 0 0 0 0 0 0 0 0 K 0.5354 - 15 + NaN NaN 112983.9 NaN 10820 3023 13842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13847 61.602 NaN 1059400 35 0 180920 0.411 + 24348 RYIDRIHIFF 10 95 460.59092839477734 NaN 0 460.5907287597656 PEAK HCD FTMS 0 0 0 13846 535284.5 0.5103222771824732 1 -0.007427215576171875 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 28.181266145913348 0.21436315299765657 1 {I|L}{M(Oxidation (M))|F} 2 8 7.0783 0 0 0.77008 0 0 493.93501733467343 162.0561464899047 655.9911638245782 0 0 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 0.77008 + + 26 + NaN NaN 392017.6 NaN 10821 3024 13846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13849 61.61 NaN 132840000 35 0 18209000 0.327 + 2888 DYSPYFKTI 9 110 567.2793386389775 1132.544124344755 2 567.280029296875 MULTI HCD FTMS 0 0 0 13848 142122448 0.8066266198091191 2 -0.028385162353515625 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 203.63889746883072 1.2993995354712843E-17 1 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.96 0 0 10.327 10.327 89.633 0 0 0 1.095756168365014 1.095756168365014 1.095756168365014 1.095756168365014 0 3.048455006504028 2 2.316036427016881 0.25 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}T{I|L}K 10.327;10.23;9.2341;8.61;8.3208;8.2182;7.6139;7.3247;7.172;6.598 +;+;-;-;-;-;-;-;-;- + 2936 + NaN NaN 720898.6 NaN 10822 3025 13848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13850 61.614 NaN 351920 35 0 49884 0.261 + 10655 IPVESEVNL 9 70 500.2717266539479 998.5289003746958 2 500.2719421386719 MULTI HCD FTMS 0 0 0 13848 244014.859375 0.2717905261708453 14 -0.2747344970703125 2 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 61.357469665136826 0.01568246967499496 1 ESEVN{I|L} 6 3 53.281 0 0 5.336 0 0 309.20414931465 0 309.20414931465 0 33.989568978889935 0 0 0 0.9247425010840047 0 0.9247425010840047 0.3807196863200844 + ESEVN{I|L} 5.336 + + 223 NaN NaN 151934.3 NaN 10823 3025 13848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13851 61.618 NaN 632140 35 0 68009 0.261 + 5718 FPAGYMYPSM 10 85 598.24369257095 1194.4728322086999 2 598.7452392578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.13359017698441 0.016242133362018647 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 50.618 0 0 4.2376 0 0 535.2459583966812 0 535.2459583966812 0 22.470390930149687 0 0 0 1.805462187404089 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.2376 + + 839 NaN NaN 186853.4 NaN 10824 3025 13848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13852 61.621 NaN 156490 35 0 17374 0.261 -1 0 50 644.1331787109375 NaN 0 644.1331787109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 {I|L}{I|L} 2 -1 9.464 0 0 0.73578 0 0 660.9020068341812 396.1524752252563 1057.0544820594375 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.73578 - 6 + NaN NaN 115388.5 NaN 10825 3025 13848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13854 61.626 NaN 1074700 35 0 187260 0.326 + -1 DKSSMTECTL 10 90 586.2529085149123 1170.4912640966245 2 586.2535400390625 MULTI HCD FTMS 0 0 0 13853 442777.78125 0.4478078953869073 4 -0.057071685791015625 1 Carbamidomethyl (C) _DKSSMTEC(Carbamidomethyl (C))TL_ REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF 32.78568957990786 0.20801173326193015 1 DYS 3 -1 46.655 0 0 3.986 0 0 0 802.3457125299436 802.3457125299436 21.97621246364342 0 0 0 0 0 2 0.7614393726401688 0 DYS 3.986 - 189 + NaN NaN 259923.6 NaN 10826 3026 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13855 61.63 NaN 538980 35 0 47244 0.261 + 34864 YSDFYEAATL 10 102 590.2637182012246 1178.5128834692491 2 590.2643432617188 MULTI HCD FTMS 0 0 0 13853 167645.578125 0.4290262276069441 9 -0.150146484375 2 Unmodified _YSDFYEAATL_ REV__ENSG00000182223|ENST00000327939|ZAR1 8.745405648335112 0.42901288225909884 1 S[YE]{M(Oxidation (M))|F}KT{I|L} 7 -1 42.809 0 0 3.6324 0 0 292.07053668606017 0 292.07053668606017 0 20.13251345633968 0 0 0 2.548455006504028 0 0.7614393726401688 0 S[YE]{M(Oxidation (M))|F}KT{I|L} 3.6324 - 323 + NaN NaN 168935.8 NaN 10827 3026 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13856 61.633 NaN 2447000 35 0 262230 0.264 + 26179 SPPPFPTL 8 93 428.23407015999305 NaN 0 428.2342834472656 PEAK HCD FTMS 0 0 0 13853 53530.640625 0.160120427261874 3 -0.03798675537109375 3 Unmodified _SPPPFPTL_ REV__ENST00000401558.6_1_2:61764944-61765121:-|nuORF 74.39630413441286 0.12918482660764355 1 PY{M(Oxidation (M))|F}KT 5 -1 58.206 0 0 6.8121 0 0 87.03203480396367 128.07175623111564 215.10379103507933 0 0 0 0 0 2.274227503252014 0 1.892159058960253 0 PY{M(Oxidation (M))|F}KT 6.8121 - 250 + NaN NaN 445022.9 NaN 10828 3026 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13858 61.638 NaN 1262400 35 0 143800 0.327 + 13301 KYMDVQFDF 9 78 604.7680796891424 1207.5216064450847 2 604.768310546875 MULTI HCD FTMS 0 0 0 13857 616400.625 0.11642305174087134 39 -0.9236068725585938 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 84.5221896805406 0.004669506596793478 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 75.346 0 0 6.2397 6.2397 83.609 0 0 0 0.44022814763920337 7.535918783769091 0.44022814763920337 0.44022814763920337 0 2.274227503252014 0 0.6747425010840047 0.805462187404089 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.2397;6.2033;5.8505;5.8468;5.4782;5.4772;5.4407;5.3572;5.3419;5.1254 +;-;-;-;-;-;-;-;-;- + 1319 NaN NaN 276055.6 NaN 10829 3027 13857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13859 61.643 NaN 2622600 35 0 471780 0.264 + 13068 KYLDVKFEYL 10 95 439.90766346480865 1316.701160994626 3 439.90777587890625 MULTI HCD FTMS 0 0 0 13857 887500.9375 0.3517272713581949 15 -0.31133270263671875 2 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 22.10888232116614 0.3043129911316316 1 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 9 7 56.41 0 0 4.2842 0 0 116.14804990482965 0 116.14804990482965 0 16.567795724880753 0 0 0 0.5 0 2.094187677400525 0 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 4.2842 - 973 + NaN NaN 473849.2 NaN 10830 3027 13857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13860 61.646 NaN 1667200 35 0 192980 0.261 + 23429 RLPEEWSQW 9 94 615.7989279497837 1229.5833029663672 2 615.7984008789062 MULTI HCD FTMS 0 0 0 13857 535386.25 0.2798576082001326 -8 0.08901214599609375 3 Unmodified _RLPEEWSQW_ ENSG00000106211|ENST00000248553|HSPB1 80.6760300276096 0.005633624786464751 1 [R{I|L}][EP]EWSQW 9 0 + 77.884 0 0 6.3342 6.3342 88.504 0 0 0 8.354706403678875 8.354706403678875 8.354706403678875 9.208187539523749 0 2.25 1.3979400086720375 0.7302046884880937 0 + + [R{I|L}][EP]EWSQW;[R{I|L}][EP]EWS[AG]W;[R{I|L}][EP]EW{[WT]|[RM]}N;{[CT]|[{M(Oxidation (M))|F}G]}QSWE{I|L}{I|L}HN;[YT][RV][YQ]SQW;{[CT]|[{M(Oxidation (M))|F}G]}QSWE[HV][Q{I|L}];{[CT]|[{M(Oxidation (M))|F}G]}[AG]SWE{I|L}{I|L}HN;{[CT]|[{M(Oxidation (M))|F}G]}[AG]SWE[HV][Q{I|L}];[R{I|L}]WWE{[QD]|[EN]|[WG]|[KD]|[RS]}[TP];[YT][RV][WY]TQN 6.3342;5.5853;3.8699;3.6387;3.3215;3.3073;2.8933;2.5619;1.5016;1.1384 +;-;-;-;-;-;-;-;-;- + 391 NaN NaN 331650.2 NaN 10831 3027 13857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13861 61.649 NaN 189200 35 0 7442.1 0.261 + 18160 MPDGQFKDISL 11 52 625.8080444335938 NaN 0 625.8080444335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 5.783430956126388 0.3257142153868472 1 T 1 11 4.6041 0 0 0.36844 0 0 653.2710160138687 492.25889002017817 1145.529906034047 0 0 0 0 0 0 0 0 0 T 0.36844 - 5 + NaN NaN 108300 NaN 10832 3027 13857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13863 61.654 NaN 380020 35 0 38465 0.327 -1 LRSDPDDARAM 11 72 631.7937039303056 1261.572854927411 2 632.2955932617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 16.149105407346934 0.31637472687818013 1 SC(Carbamidomethyl (C))W 3 -1 36.031 0 0 2.856 0 0 810.401942914716 0 810.401942914716 0 25.74539712336197 0 0 0 1.1861818737241734 0 0.2742275032520141 0 SC(Carbamidomethyl (C))W 2.856 - 174 NaN NaN 146070.9 NaN 10833 3028 13862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13864 61.659 NaN 374970 35 0 43924 0.263 + 3807 EPEPGEPLL 9 65 490.750556054329 979.4865591754581 2 490.75079345703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 16.942295170755138 0.21397866736869717 1 D{M(Oxidation (M))|F} 2 9 14.949 0 0 1.5262 0 0 699.3579533782832 0 699.3579533782832 0 5.040462739150296 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 1.5262 - 52 NaN NaN 134216.8 NaN 10834 3028 13862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13866 61.663 NaN 3412700 35 0 330110 0.327 + 26726 SYDPLYYIN 9 113 574.26863751012 1146.52272208704 2 574.770263671875 MULTI HCD FTMS 0 0 0 13865 2026426.75 0.5687275541480689 5 -0.08945846557617188 1 Unmodified _SYDPLYYIN_ REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1 34.10243960390752 0.09241788333544565 1 SPY{M(Oxidation (M))|F}KT{I|L} 7 -1 67.273 0 0 5.8675 0 0 292.0694824655506 0 292.0694824655506 0 13.856150930823148 0 0 0 2.3979400086720375 0 1.8098943791441968 0 SPY{M(Oxidation (M))|F}KT{I|L} 5.8675 - 1925 NaN NaN 609011.3 NaN 10835 3029 13865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13867 61.668 NaN 1078100 35 0 288550 0.261 + 14039 KYVENFGLI 9 74 541.7977298733354 1081.5809068134706 2 541.7979125976562 MULTI HCD FTMS 0 0 0 13865 1240235.75 0.8375154155422431 6 -0.11215972900390625 2 Unmodified _KYVENFGLI_ ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF 83.42873516780209 0.004742894019233849 1 [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L} 9 0 + 94.556 0 0 8.7424 8.7424 88.968 0 0 0 2.7241553025821474 16.478174818886373 2.7241553025821474 2.7241553025821474 0 2.75 0 0.5114393726401688 1.1307196863200843 + + [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L};[Y{I|L}]DKN{M(Oxidation (M))|F}G{I|L}{I|L};[YK]VEGG{M(Oxidation (M))|F}G{I|L}{I|L};[Y{I|L}]DKGG{M(Oxidation (M))|F}G{I|L}{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NE[YV]K{I|L};[YK]VE[PG][YV]K;[{M(Oxidation (M))|F}V]ANE[YV]K{I|L};[Y{I|L}]DK[PG][YV]K;{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NE[YV]{I|L}K;{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NE{I|L}[YV]K 8.7424;8.4906;7.8911;7.6392;3.0142;2.5198;2.2948;2.2679;2.1752;1.9005 +;-;-;-;-;-;-;-;-;- + 1160 NaN NaN 245885.5 NaN 10836 3029 13865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13868 61.671 NaN 982380 35 0 184910 0.261 + 27366 SYSMIVNNL 9 87 528.7551482305643 1055.4957435279284 2 528.7550659179688 MULTI HCD FTMS 0 0 0 13865 604021.4375 0.5186786936029394 13 -0.2860069274902344 3 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 129.77232118876745 0.0006187813247758304 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 65.094 0 0 6.1672 6.1672 88.218 0 0 0 39.7098361658898 1.7331644591528317 1.7331644591528317 9.208187539523749 0 2.615356566548286 0 0.2742275032520141 1.2887254899964358 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};[{M(Oxidation (M))|F}V]S{I|L}{[{M(Oxidation (M))|F}C]|[YS]}NN{I|L};[YV]PWD[YT]{I|L};[{M(Oxidation (M))|F}V]S{I|L}{[{M(Oxidation (M))|F}C]|[YS]}GGN{I|L};[DN]{I|L}[PA][PA]MD{I|L} 6.1672;5.2947;2.9028;2.0479;2.0304;1.362 +;-;-;-;-;- + 575 + NaN NaN 235971.1 NaN 10837 3029 13865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13869 61.675 NaN 385230 35 0 43237 0.261 + 24569 RYLNELKWSF 10 60 452.57496816219697 1354.703075086791 3 452.57537841796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RYLNELKWSF_ ENSG00000163517|ENST00000295757|HDAC11;ENST00000475818.5_1_3:13522761-13543460:+|nuORF 45.602519287354625 0.09678874836934029 1 [YR]{I|L}NE{I|L}[WK]S{M(Oxidation (M))|F} 10 0 + 80.323 0 0 5.9292 5.9292 86.687 0 0 0 7.269987279362624 74.83796566865003 7.269987279362624 8.45098040014257 0 2.305462187404089 0 0.4247425010840047 0.7614393726401688 + + [YR]{I|L}NE{I|L}[WK]S{M(Oxidation (M))|F};[YR]N{I|L}E{I|L}[WK]S{M(Oxidation (M))|F};[YR]{I|L}GGE{I|L}[WK]S{M(Oxidation (M))|F};[YR]GG{I|L}E{I|L}[WK]S{M(Oxidation (M))|F};[YR]D[Q{I|L}]{I|L}[WK]S{M(Oxidation (M))|F} 5.9292;5.3053;5.2527;4.6288;4.0418 +;-;-;-;- + 105 NaN NaN 140285.7 NaN 10838 3029 13865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13870 61.678 NaN 225050 35 0 23780 0.261 + 340 AGSERCLRSYS 11 72 410.19636506685197 1227.5672658007559 3 410.19671630859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _AGSERCLRSYS_ REV__ENSG00000169683|ENST00000306688|LRRC45;REV__ENST00000583383.5_1_17:79981501-79983267:+|nuORF 19.361941925380144 0.2883811769592959 1 E 1 -1 19.292 0 0 1.5715 0 0 603.243916507344 492.25749018874427 1095.5014066960882 0 0 0 0 0 0.9247425010840047 0 0.3054621874040891 0 E 1.5715 + + 43 + NaN NaN 117671.3 NaN 10839 3029 13865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13872 61.683 NaN 2039900 35 0 360840 0.327 -1 YDSCCVIDKIT 11 90 439.5336217219572 1315.5790357660717 3 439.8681335449219 MULTI HCD FTMS 0 0 0 13871 361735.53125 0.16890863323402697 19 -0.42655181884765625 1 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 23.015651743759182 0.2565462835198615 1 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 -1 76.934 0 0 5.8479 0 0 0 128.0718172662719 128.0718172662719 51.134993639681305 0 0 0 0 1.7302046884880937 2 1.1549471895720984 0 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 5.8479 - 877 + NaN NaN 391388.4 NaN 10840 3030 13871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13873 61.687 NaN 681100 35 0 123780 0.261 + 25468 SFDGIIAMM 9 81 508.72498263151743 1015.4354123298349 2 508.7250671386719 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 42.09456458481378 0.05572955244001856 1 S{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 46.23 0 0 4.5527 0 0 432.2040272443375 0 432.2040272443375 0 15.230012720637376 0 0 0 1.274227503252014 0 0.805462187404089 0 S{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5527 - 270 NaN NaN 184128.1 NaN 10841 3030 13871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13875 61.692 NaN 1629200 35 0 87573 0.327 -1 DNADEMIKTL 10 115 583.2742064420759 1164.5338599509516 2 583.2743530273438 MULTI HCD FTMS 0 0 0 13874 1279492.5 0.41079183278764103 8 -0.19261932373046875 1 Oxidation (M) _DNADEM(Oxidation (M))IKTL_ tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 34.93206674587334 0.18938571726943593 1 {[YD]|[{M(Oxidation (M))|F}M]}S[YE]{M(Oxidation (M))|F}KT{I|L} 9 -1 + 83.468 0 0 7.1675 7.1675 93.278 0 0 0 21.33159645642374 14.973024840566481 14.973024840566481 21.33159645642374 0 2.2302046884880937 2 1.433324508278978 0 {[YD]|[{M(Oxidation (M))|F}M]}S[YE]{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D[YE]{M(Oxidation (M))|F}KT{I|L};[{I|L}T]K{M(Oxidation (M))|F}[YE]{[YD]|[{M(Oxidation (M))|F}M]}S 7.1675;5.3357;0.40682 -;-;- 2036 NaN NaN 335874.5 NaN 10842 3031 13874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13876 61.696 NaN 2499300 35 0 183190 0.261 + 27065 SYMGHFDLL 9 137 549.7497688734081 1097.4849848136162 2 549.750244140625 MULTI HCD FTMS 0 0 0 13874 1132611.625 0.10934406447198153 45 -1.1643791198730469 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 74.92900055777586 0.007493270374442853 1 SY{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L} 9 2 + 48.666 0 0 4.4343 4.4343 84.407 0 0 0 1.6130739890010517 6.76354650097359 1.6130739890010517 9.047546135381644 0 1.6351518780601921 2 0.9392404878284264 0 SY{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}{[HG]|PP}[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};SY{[C(Carbamidomethyl (C))G]|[NC]}{I|L}EWA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};[{M(Oxidation (M))|F}E]EW{M(Oxidation (M))|F}VKN;{NN|[MP]|[D{I|L}]|[EV]}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}SY{I|L};[{M(Oxidation (M))|F}E]EWV{M(Oxidation (M))|F}KN 4.4343;3.6099;3.5708;3.3942;2.3361;2.2192;1.8946;1.6465;1.5504;1.5296 -;+;-;-;-;-;-;-;-;- + 4987 + NaN NaN 460373.6 NaN 10843 3031 13874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13877 61.7 NaN 2472000 35 0 302810 0.261 + 20273 NYLSIFRKF 9 120 594.332339014796 1186.650125096392 2 594.3318481445312 MULTI HCD FTMS 0 0 0 13874 846941.8125 0.721234052803793 8 -0.19261932373046875 3 Unmodified _NYLSIFRKF_ ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF 121.5340881639634 0.001118397630175091 1 NY{I|L}S{I|L}{M(Oxidation (M))|F}RK{M(Oxidation (M))|F} 9 0 + 81.447 0 0 6.8636 6.8636 93.639 0 0 0 42.56478326369406 7.044161002296946 7.044161002296946 33.412063604933174 0 1.7544321917401078 2 0.6861818737241735 0.5649093276264391 + + NY{I|L}S{I|L}{M(Oxidation (M))|F}RK{M(Oxidation (M))|F};[YN]{I|L}[YR][{I|L}A]K{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}][RH]{I|L}S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]K{I|L}S{M(Oxidation (M))|F}DK{M(Oxidation (M))|F};[RK]N[TP]{I|L}S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[RK]{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F}DK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[Y{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[RK]GG[TP]{I|L}S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[HG]|PP}V{I|L}NK{M(Oxidation (M))|F};[QP]{M(Oxidation (M))|F}S{I|L}H[{I|L}A]K{M(Oxidation (M))|F} 6.8636;4.048;3.1602;2.8026;2.6754;2.4231;2.0381;1.9031;1.8467;1.7668 +;-;-;-;-;-;-;-;-;- + 1264 + NaN NaN 464398.1 NaN 10844 3031 13874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13878 61.703 NaN 1174000 35 0 95029 0.261 -1 RLPFQCSASY 10 93 614.7909072848989 NaN 0 614.790771484375 PEAK HCD FTMS 0 0 0 13874 401618.25 0.5345839002186457 -2 0.02840423583984375 4 Carbamidomethyl (C) _RLPFQC(Carbamidomethyl (C))SASY_ ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2 27.628801355627647 0.21883835723996892 1 QSWEEP 6 -1 24.619 0 0 2.0055 0 0 202.07472325432428 266.162173722384 468.2368969767083 0 0 0 0 0 1.3807196863200843 0 0 0 QSWEEP 2.0055 - 409 + NaN NaN 281620 NaN 10845 3031 13874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13880 61.708 NaN 2371800 35 0 627770 0.327 + 1016 AYFTSRDLF 9 112 560.2775800768909 1118.5406072205817 2 560.2779541015625 MULTI HCD FTMS 0 0 0 13879 1215595 0.7458479975653693 -4 0.053562164306640625 1 Unmodified _AYFTSRDLF_ LIMK2-ATXN10|2|fusion;nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2 110.6747026088012 0.0028322563155251486 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TSRD{I|L}{M(Oxidation (M))|F} 9 0 + 96.455 0 0 8.6233 8.6233 92.426 0 0 0 25.642492736872597 65.63100339696028 25.642492736872597 9.208187539523749 0 2.548455006504028 2 1.3169015600442577 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TSRD{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TS[VG]D{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]TES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RV]ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]TEYA;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RV]EYA;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]AV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]ATSRD{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]RYES{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]AT[RV]ES{M(Oxidation (M))|F} 8.6233;7.8001;7.5229;7.4733;6.3763;6.3267;6.2736;5.9617;5.4622;4.8117 +;-;-;-;-;-;-;-;-;- + 2711 NaN NaN 444347.2 NaN 10846 3032 13879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13881 61.712 NaN 791700 35 0 60656 0.261 + 592 APFKFDMEL 9 93 557.268033382246 1112.521513831292 2 557.26806640625 MULTI HCD FTMS 0 0 0 13879 344197.75 0.37721887756101524 -12 0.15177536010742188 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 121.5340881639634 0.001118397630175091 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 92.022 0 0 8.2715 8.2715 93.759 0 0 0 13.085456211725202 13.085456211725202 13.085456211725202 13.085456211725202 0 3.0356668758921828 0 2.2614393726401687 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}Y{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]D{I|L} 8.2715;7.0953;6.3587;6.1351;5.7229;5.6511;5.3985;5.3681;5.293;4.9513 +;+;-;-;-;-;-;-;-;- + 1836 + NaN NaN 204726 NaN 10847 3032 13879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13882 61.716 NaN 613680 35 0 55947 0.261 -1 DYCLENKTL 9 84 578.2705714487314 1154.5265899642627 2 578.2710571289062 MULTI HCD FTMS 0 0 0 13879 199992.15625 0.12780268297109437 10 -0.24179840087890625 3 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 39.94969957227396 0.06557568441294001 1 DYSP 4 -1 53.73 0 0 4.6539 0 0 0 689.3261202447874 689.3261202447874 29.917665879116626 0 0 0 0 0.7059771852360797 2 0.4247425010840047 0 DYSP 4.6539 - 302 + NaN NaN 186983.5 NaN 10848 3032 13879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13883 61.719 NaN 284800 35 0 15326 0.261 + 34070 YNKPLDPNSDD 11 77 639.287884292277 1276.561215651354 2 639.7906494140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YNKPLDPNSDD_ ENSG00000163623|ENST00000295886|NKX6-1 7.608950283845883 0.38555039536024605 1 [R{I|L}][EP]EWSC(Carbamidomethyl (C))[NS] 10 9 + 25.256 0 0 1.9784 1.9784 80.672 0 0 0 1.6501298457641234 3.3725054575099733 1.6501298457641234 4.27028188162717 0 0.3494850021680094 0 0.28872548999643577 0 [R{I|L}][EP]EWSC(Carbamidomethyl (C))[NS];[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}SQ{[C(Carbamidomethyl (C))G]|[NC]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}S{I|L}[EC];[R{I|L}][EP]EWS[SG]{[C(Carbamidomethyl (C))G]|[NC]};[R{I|L}][EP]EW[KC]{[C(Carbamidomethyl (C))G]|[NC]};[R{I|L}][EP]EHHQ[EC];[R{I|L}][EP][C(Carbamidomethyl (C))R]SQ[EC];[R{I|L}][EP]EWS[CG][NS];[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AE[EC];[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AC(Carbamidomethyl (C))[NS] 1.9784;1.6439;1.6029;1.506;1.3646;1.3236;1.3236;1.2605;1.2291;1.0247 -;-;-;-;-;-;-;-;-;- 229 NaN NaN 131691.8 NaN 10849 3032 13879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13885 61.724 NaN 1385300 35 0 246610 0.327 + 31509 VYGFLRNGF 9 95 536.7825132891246 1071.5504736450491 2 536.782470703125 MULTI HCD FTMS 0 0 0 13884 931732.625 1 0 0 1 Unmodified _VYGFLRNGF_ ENST00000343327.6_1_9:115030452-115095785:-|nuORF 170.55093314911917 3.526520053928E-09 1 VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F} 9 0 + 116.72 0 0 10.893 10.893 95.823 0 0 0 92.84440644703906 16.478174818886373 16.478174818886373 12.26280941356464 0 2.885151878060192 2 0 1.4049471895720984 + + VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VYGQ[HK]PP{M(Oxidation (M))|F};VY{[ET]|[MV]}{I|L}V{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}G[RN]{M(Oxidation (M))|F};VYG[AG][HK]PP{M(Oxidation (M))|F};[YV]P[HK]QPG{M(Oxidation (M))|F} 10.893;9.7485;8.3295;7.4701;6.8695;6.1762;6.0558;6.0316;6.0102;5.5731 +;-;+;-;-;-;-;-;-;- + 3583 + NaN NaN 296321.9 NaN 10850 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13886 61.728 NaN 1508100 35 0 262940 0.261 + -1 SNMSGDTSERS 11 104 593.7351433434706 1185.455733753741 2 593.735107421875 MULTI HCD FTMS 0 0 0 13884 654797.3125 0.2631759322049907 10 -0.24184799194335938 2 Oxidation (M) _SNM(Oxidation (M))SGDTSERS_ REV__ENSG00000176406|ENST00000696799|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-1|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-7|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2;REV__nc|ENSG00000176406|Q9UQ26|RIMS2;REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant 8.155526934196011 0.3831532958467648 1 [YN]{I|L}S 4 -1 35.565 0 0 3.0001 0 0 0 705.2101337383691 705.2101337383691 20.097295165075927 0 0 0 0 0 2 0.4247425010840047 0.6139829889124311 [YN]{I|L}S 3.0001 - 119 NaN NaN 328374.8 NaN 10851 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13887 61.732 NaN 638700 35 0 46558 0.261 + 5839 FPDAVKQIL 9 92 515.8001148454115 1029.5856767576229 2 515.8002319335938 MULTI HCD FTMS 0 0 0 13884 616684.8125 1 0 0 3 Unmodified _FPDAVKQIL_ ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;nc|ENSG00000142733|O95382-3|MAP3K6 67.83816525789305 0.009787749748478139 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQ{I|L}{I|L} 9 0 + 78.572 0 0 7.6314 7.6314 90.876 0 0 0 19.990823894397565 53.886664592400564 19.990823894397565 9.208187539523749 0 2.055462187404089 1.5228787452803376 0.6747425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVK[AG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVK{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVK{I|L}GA{I|L};[DP]{M(Oxidation (M))|F}AVKQ{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VKQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK[AG]{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK{I|L}Q{I|L};{M(Oxidation (M))|F}PDAVKQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK{I|L}GA{I|L} 7.6314;6.737;6.6575;6.4711;5.2763;4.5714;4.382;4.3024;4.2066;4.1161 +;-;-;-;-;-;-;-;+;- + 635 NaN NaN 181031.3 NaN 10852 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13888 61.735 NaN 423790 35 0 22625 0.261 + 10747 IRPEDDDEKQ 10 75 622.7910324002158 1243.5675118672316 2 623.291259765625 MULTI HCD FTMS 0 0 0 13884 54925.35546875 0.2140670956425278 1 -0.029254913330078125 4 Unmodified _IRPEDDDEKQ_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000584025.1_1_17:73738673-73744941:+|nuORF;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 16.149105407346934 0.3600587335443843 1 [R{I|L}][EP]EWSQ{[CP]|[EA]} 10 6 + 53.134 0 0 4.2727 4.2727 83.667 0 0 0 15.081782716425948 7.269987279362624 7.269987279362624 7.808487663269972 0 1 1.5228787452803376 0 0 [R{I|L}][EP]EWSQ{[CP]|[EA]};[R{I|L}][EP]EW[DN]W;[R{I|L}][EP]E{[DA]|[EG]}SQ{[CP]|[EA]};[R{I|L}][EP]EWS[AG]{[CP]|[EA]};[R{I|L}][EP]EW{[WN]|[YH]}D;{[MS]|[{M(Oxidation (M))|F}A]}QS[YV]{I|L}SQSD;[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AQ{[CP]|[EA]};[R{I|L}][EP]EW{[QC]|[C(Carbamidomethyl (C))A]}[PS];[R{I|L}][EP]TDDAQ{[CP]|[EA]};[R{I|L}][EP]T[WD]Q{[CP]|[EA]} 4.2727;3.6448;3.5357;3.5357;3.5053;3.0599;3.0516;2.7649;2.709;2.6644 -;-;-;-;-;-;-;-;-;- 479 NaN NaN 150608.2 NaN 10853 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13889 61.738 NaN 454220 35 0 26873 0.261 -1 KYMYFTVVM 9 83 599.2878015917288 1196.5610502502575 2 599.2881469726562 MULTI HCD FTMS 0 0 0 13884 148286.859375 0.49145908527440246 8 -0.20627593994140625 5 Oxidation (M) _KYMYFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 38.175570920033316 0.07371992880350783 1 {I|L}T{M(Oxidation (M))|F}Y{[SA]|[TG]}V{M(Oxidation (M))|F} 8 -1 47.63 0 0 3.9805 0 0 250.09474379707189 0 250.09474379707189 0 34.4420594384119 0 0 0 1.7614393726401687 0 0.3807196863200844 0 {I|L}T{M(Oxidation (M))|F}Y{[SA]|[TG]}V{M(Oxidation (M))|F} 3.9805 - 673 NaN NaN 158202.3 NaN 10854 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13890 61.742 NaN 293110 35 0 22885 0.261 + 34075 YNLHKNAFP 9 74 552.2852261940781 NaN 0 552.3182983398438 PEAK HCD FTMS 0 0 0 13884 28379.87890625 0.18884815153498521 4 -0.11202621459960938 6 Unmodified _YNLHKNAFP_ REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;REV__FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant 20.453626601364224 0.18435338882370536 1 {I|L}{M(Oxidation (M))|F}TKG{I|L} 6 -1 23.32 0 0 2.1151 0 0 166.08186493164436 274.0830477350219 440.1649126666663 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}TKG{I|L} 2.1151 - 291 + NaN NaN 136832.3 NaN 10855 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13891 61.745 NaN 203280 35 0 13910 0.261 + 33125 YDYVIISI 8 55 493.26426246169456 NaN 0 493.2641296386719 PEAK HCD FTMS 0 0 0 13884 42991.234375 0.2751597216839968 4 -0.11202621459960938 7 Unmodified _YDYVIISI_ REV__tr|U7T5T5|U7T5T5_FUSNUDNApolymeraseIIIdeltaN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00384PE=4SV=1 24.67388899826682 0.38182156912090326 1 S 1 -1 15.485 0 0 1.5728 0 0 131.0925844411958 763.3617642926016 894.4543487337974 0 0 0 0 0 0.5 0 0.3494850021680094 0 S 1.5728 + + 13 + NaN NaN 124793.7 NaN 10856 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13892 61.748 NaN 186460 35 0 7942.8 0.261 -1 RLNTTPCCWS 10 61 647.7883113279846 NaN 0 647.6991577148438 PEAK HCD FTMS 0 0 0 13884 52633.61328125 0.6583953165419184 -2 0.03179931640625 8 2 Carbamidomethyl (C) _RLNTTPC(Carbamidomethyl (C))C(Carbamidomethyl (C))WS_ ENST00000558780.5_2_14:24651254-24657791:-|nuORF 5.296884461304476 0.3356508900602619 1 E 1 -1 6.9897 0 0 0.54035 0 0 669.2349834816297 492.2562349908813 1161.491218472511 0 0 0 0 0 0 0 0 0 E 0.54035 - 14 + NaN NaN 113378.6 NaN 10857 3033 13884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13894 61.753 NaN 52194000 35 0 7099100 0.327 + 2889 DYSPYFKTI 9 103 567.2793386389775 1132.544124344755 2 567.2799072265625 MULTI HCD FTMS 0 0 0 13893 48428400 0.2748590187157763 11 -0.25141143798828125 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 203.63889746883072 1.2993995354712843E-17 1 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 118.54 0 0 10.467 10.467 90.413 0 0 0 2.6289167215168163 2.6289167215168163 2.6289167215168163 2.6289167215168163 0 3.048455006504028 2 2.3600592417808013 0.23965182871044374 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}[{I|L}T]K;{[YD]|[{M(Oxidation (M))|F}M]}SPYT{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K;{[YD]|[{M(Oxidation (M))|F}M]}SPYT[K{I|L}]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}[{I|L}T]K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}[{I|L}T]K;{[YD]|[{M(Oxidation (M))|F}M]}PSYT{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K 10.467;10.235;8.5742;8.2932;7.5034;6.243;6.0333;5.8428;5.5618;4.5824 +;+;-;-;-;-;-;-;-;- + 2754 + NaN NaN 636491.9 NaN 10858 3034 13893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13895 61.757 NaN 966530 35 0 164750 0.262 + 24349 RYIDRIHIFF 10 59 460.59092839477734 NaN 0 460.59100341796875 PEAK HCD FTMS 0 0 0 13893 285202.46875 0.27190246179473376 11 -0.25141143798828125 2 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 17.86316937532769 0.2979442087540508 1 {M(Oxidation (M))|F} 1 9 6.9897 0 0 0.76044 0 0 607.019978771645 162.0561922662719 769.0761710379169 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.76044 + + 9 + NaN NaN 241040.6 NaN 10859 3034 13893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13896 61.761 NaN 421120 35 0 204900 0.261 + 16336 LRLVRLVGLIK 11 55 427.3026067211566 NaN 0 427.302734375 PEAK HCD FTMS 0 0 0 13893 141287.25 0.42768079246140794 1 -0.022701263427734375 3 Unmodified _LRLVRLVGLIK_ REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__ENSG00000196557|ENST00000348261|CACNA1H;REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H;REV__SH3BP1-CACNA1I|1|fusion 0.09484139111097674 0.34185110575506755 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.64328 0 0 249.3797362921195 453.15363489322505 702.5333711853445 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.64328 - 11 + NaN NaN 155027.3 NaN 10860 3034 13893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13897 61.764 NaN 425320 35 0 25546 0.261 + -1 LCGAREELPPC 11 82 622.7910324002158 1243.5675118672316 2 623.7960205078125 MULTI HCD FTMS 0 0 0 13893 106742.171875 0.41630825597010745 -3 0.061054229736328125 4 Carbamidomethyl (C) _LC(Carbamidomethyl (C))GAREELPPC_ REV__ENSG00000164764|ENST00000297354|SBSPON 11.494710602746466 0.35692862141139436 1 [R{I|L}][EP]EWSQ{[CP]|[EA]} 10 -1 + 47.553 0 0 3.8239 3.8239 82.496 0 0 0 12.85280958067105 6.588709367037282 6.588709367037282 6.154239528859442 0 0.3054621874040891 1.5228787452803376 0.2614393726401688 0 [R{I|L}][EP]EWSQ{[CP]|[EA]};[R{I|L}][EP]TDDAQ{[CP]|[EA]};[R{I|L}][EP]EWCQ[PS];[R{I|L}][EP]E{I|L}C(Carbamidomethyl (C))Q{[CP]|[EA]};[R{I|L}][EP]E{[DA]|[EG]}SQ{[CP]|[EA]};[R{I|L}][EP]EWS[AG]{[CP]|[EA]};[R{I|L}][EP]T[WD]Q{[CP]|[EA]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AQ{[CP]|[EA]};[R{I|L}][EP]TDDSQ[PS];[R{I|L}][HS][WE]SQ{[DS]|[MA]|[CV]|TT} 3.8239;3.3291;3.2941;3.1444;3.087;3.087;3.0423;2.8449;2.7992;2.7904 -;-;-;-;-;-;-;-;-;- 465 NaN NaN 149462.3 NaN 10861 3034 13893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13898 61.768 NaN 282140 35 0 10851 0.261 -1 RICFPHSQEC 10 70 638.7839767697982 NaN 0 638.7837524414062 PEAK HCD FTMS 0 0 0 13893 185838.1875 0.8810124286915241 -1 0.029254913330078125 5 Carbamidomethyl (C) _RIC(Carbamidomethyl (C))FPHSQEC_ ENSG00000274209|ENST00000620264|ANTXRL 38.61474834105838 0.1441486199092484 1 QSWE 4 -1 38.047 0 0 2.9828 0 0 250.05929993210935 492.25754724674067 742.31684717885 0 0 0 0 0 1.610924374808178 0 0 0 QSWE 2.9828 - 113 + NaN NaN 135050.1 NaN 10862 3034 13893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13899 61.771 NaN 411840 35 0 64250 0.264 + 32603 WLDHWLQHR 9 57 430.88812362177003 NaN 0 430.8886413574219 PEAK HCD FTMS 0 0 0 13893 236112.6875 0.6450075341593947 4 -0.10548019409179688 6 Unmodified _WLDHWLQHR_ ENSG00000115107|ENST00000393110|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3 0.9622753412299311 0.2905837902567025 1 W 1 8 5.4846 0 0 0.63792 0 0 122.41982797372528 548.235585881399 670.6554138551243 0 0 0 0 0 0 0 0 0 + W 0.63792 + + 6 + NaN NaN 147382.9 NaN 10863 3034 13893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13901 61.776 NaN 1046500 35 0 119340 0.327 + 13302 KYMDVQFDF 9 74 604.7680796891424 1207.5216064450847 2 604.7681274414062 MULTI HCD FTMS 0 0 0 13900 760443.75 0.1436292866384946 47 -1.2405738830566406 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 93.93812099017352 0.0044227730261779084 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 79.263 0 0 6.5641 6.5641 88.955 0 0 0 1.4485657490360637 56.15356566548286 1.4485657490360637 9.208187539523749 0 2.274227503252014 0 0.7302046884880937 0.7614393726401688 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}DK{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K 6.5641;5.8015;4.8455;4.6996;3.4559;3.3101;3.2467;3.1009;2.7691;2.6821 +;-;-;-;-;-;-;-;-;- + 1529 NaN NaN 236026.2 NaN 10864 3035 13900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13902 61.78 NaN 396650 35 0 63974 0.261 -1 DISMTNLGSMA 11 65 586.2529085149123 1170.4912640966245 2 586.2525024414062 MULTI HCD FTMS 0 0 0 13900 157083.578125 0.15886810381816346 12 -0.2744636535644531 2 2 Oxidation (M) _DISM(Oxidation (M))TNLGSM(Oxidation (M))A_ ENSG00000175820|ENST00000322527|CCDC168 16.149105407346934 0.31637472687818013 1 D{I|L} 2 -1 18.583 0 0 1.5877 0 0 0 939.3586980540373 939.3586980540373 3.8907562519182193 0 0 0 0 0 0 0 0 D{I|L} 1.5877 + + 20 + NaN NaN 139802.3 NaN 10865 3035 13900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13903 61.784 NaN 286650 35 0 16345 0.261 + 34865 YSDFYEAATL 10 88 590.2637182012246 1178.5128834692491 2 590.2631225585938 MULTI HCD FTMS 0 0 0 13900 135976.609375 0.3479813330921357 18 -0.4381866455078125 3 Unmodified _YSDFYEAATL_ REV__ENSG00000182223|ENST00000327939|ZAR1 8.745405648335112 0.42901288225909884 1 S[YE]{M(Oxidation (M))|F}KT{I|L} 7 -1 38.873 0 0 3.2985 0 0 292.066218711579 0 292.066218711579 0 16.197435287020383 0 0 0 2.3494850021680094 0 0.6549471895720985 0 S[YE]{M(Oxidation (M))|F}KT{I|L} 3.2985 - 243 + NaN NaN 127798.4 NaN 10866 3035 13900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13904 61.787 NaN 313190 35 0 41612 0.261 + 5719 FPAGYMYPSM 10 68 598.24369257095 1194.4728322086999 2 598.24365234375 MULTI HCD FTMS 0 0 0 13900 156333.234375 0.7282920381101566 -1 0.022701263427734375 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 1 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 53.003 0 0 4.4374 0 0 535.242479392775 0 535.242479392775 0 43.70629071651592 0 0 0 1.805462187404089 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.4374 + + 227 NaN NaN 127350.2 NaN 10867 3035 13900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13905 61.79 NaN 205090 35 0 29388 0.264 -1 PERLEMMKY 9 61 410.19636506685197 1227.5672658007559 3 410.5320739746094 MULTI HCD FTMS 0 0 0 13900 24243.80859375 0.21840686400609105 3 -0.0827789306640625 5 2 Oxidation (M) _PERLEM(Oxidation (M))M(Oxidation (M))KY_ tr|U7T0G0|U7T0G0_FUSNULargeribosomalsubunitproteinbL33OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmGPE=3SV=1 12.872603262515298 0.2491399024913319 1 Q[R{I|L}]CCE 6 -1 21.923 0 0 1.7859 0 0 0 492.2573879450342 492.2573879450342 18.824543621168388 0 0 0 0 0.9247425010840047 0 0 0 Q[R{I|L}]CCE 1.7859 - 21 + NaN NaN 116611.4 NaN 10868 3035 13900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13906 61.794 NaN 151650 35 0 13268 0.261 + 10656 IPVESEVNL 9 56 500.27131931250335 NaN 0 500.2711486816406 PEAK HCD FTMS 0 0 0 13900 26050.615234375 0.2507997324484949 3 -0.0827789306640625 6 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 32.30548876998284 0.10480114246275442 1 NV 2 8 22.519 0 0 2.2552 0 0 131.0932234865317 651.3024801532065 782.3957036397383 0 0 0 0 0 1 0 0 0.3054621874040891 NV 2.2552 - 28 + NaN NaN 108127.8 NaN 10869 3035 13900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13908 61.798 NaN 2266700 35 0 211750 0.327 + 23430 RLPEEWSQW 9 114 615.7989279497837 1229.5833029663672 2 615.7987670898438 MULTI HCD FTMS 0 0 0 13907 1339242.875 0.7000503053572429 1 -0.037353515625 1 Unmodified _RLPEEWSQW_ ENSG00000106211|ENST00000248553|HSPB1 93.93812099017352 0.0044227730261779084 1 [R{I|L}]PEEWSQW 9 0 + 82.761 0 0 6.7308 6.7308 89.295 0 0 0 1.645745892184678 1.645745892184678 1.645745892184678 9.208187539523749 0 2.4564608101803795 1.3979400086720375 0.7614393726401688 0.25 + + [R{I|L}]PEEWSQW;[R{I|L}]PEEWS[AG]W;[R{I|L}]PEESWQW;[R{I|L}]PEEWQSW;[R{I|L}]PE{[WS]|[C(Carbamidomethyl (C)){I|L}]}EQW;[R{I|L}]PETDWQW;[R{I|L}]PEESW[AG]W;{M(Oxidation (M))|F}GQSWE{I|L}{I|L}HN;[R{I|L}]PEEW[AG]SW;[R{I|L}]PETDW[AG]W 6.7308;5.9819;5.5689;5.2288;5.1862;5.1437;4.82;4.5183;4.4799;4.3948 +;-;-;-;-;-;-;-;-;- + 2742 NaN NaN 435723.8 NaN 10870 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13909 61.803 NaN 1683800 35 0 181480 0.261 + 26727 SYDPLYYIN 9 97 574.26863751012 1146.52272208704 2 574.2686767578125 MULTI HCD FTMS 0 0 0 13907 1431843.875 0.2598009103821377 13 -0.310760498046875 2 Unmodified _SYDPLYYIN_ REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1 26.88365393820708 0.12808753336095696 1 SPY{M(Oxidation (M))|F}KT{I|L} 7 -1 65.344 0 0 5.6993 0 0 292.06949724288404 0 292.06949724288404 0 10.294840081751445 0 0 0 2.353917193908117 0 1.6610892374447825 0 SPY{M(Oxidation (M))|F}KT{I|L} 5.6993 - 847 NaN NaN 345754.9 NaN 10871 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13910 61.808 NaN 592310 35 0 66236 0.261 -1 LRSDPDDARAM 11 91 631.7937039303056 1261.572854927411 2 631.793701171875 MULTI HCD FTMS 0 0 0 13907 442400.03125 0.9100423040303992 1 -0.037353515625 3 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 21.536976647645854 0.2694300281126922 1 [R{I|L}]PE[WE]SQ 8 -1 48.931 0 0 3.8786 0 0 0 233.05655520657606 233.05655520657606 27.649860214307225 0 0 0 0 1.8169015600442577 1.154901959985743 0.3807196863200844 0 [R{I|L}]PE[WE]SQ 3.8786 - 1080 NaN NaN 179760.8 NaN 10872 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13911 61.811 NaN 369090 35 0 58508 0.263 + 3808 EPEPGEPLL 9 65 490.750556054329 979.4865591754581 2 490.75042724609375 MULTI HCD FTMS 0 0 0 13907 165282.78125 0.5425394034953 4 -0.1154937744140625 4 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 34.10243960390752 0.09241788333544565 1 P{I|L}{I|L} 3 6 28.188 0 0 2.8778 0 0 638.2549063176015 0 638.2549063176015 0 10.255762612236904 0 0 0 0.5 0 0 0 + P{I|L}{I|L} 2.8778 + + 143 NaN NaN 138942.8 NaN 10873 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13912 61.814 NaN 540790 35 0 124090 0.261 -1 HPWMQDVLL 9 71 577.7866920795215 1153.5588312258428 2 577.7877197265625 MULTI HCD FTMS 0 0 0 13907 192999.015625 0.4362191207060344 -17 0.24921417236328125 5 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 13.90604991867851 0.24021115267848145 1 V{I|L}{I|L} 3 -1 28.188 0 0 2.4435 0 0 810.315233299025 0 810.315233299025 0 3.750612633917001 0 0 0 0.5 0 0 0 V{I|L}{I|L} 2.4435 + + 121 NaN NaN 158301.3 NaN 10874 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13913 61.818 NaN 196050 35 0 32158 0.261 + 16036 LPSEDPYQL 9 51 531.2613947767766 1060.508236620353 2 531.2611083984375 MULTI HCD FTMS 0 0 0 13907 179726.1875 0.13419715296339665 24 -0.610992431640625 6 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 13.90604991867851 0.24021115267848145 1 PYQ{I|L} 4 5 36.186 0 0 3.4121 0 0 541.2390003888687 0 541.2390003888687 0 22.998037644757048 0 0 0 0.4247425010840047 0 0 0 + PYQ{I|L} 3.4121 + + 37 NaN NaN 112219.2 NaN 10875 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13914 61.821 NaN 257640 35 0 91913 0.261 -1 0 62 525.2881288497448 524.2808523831447 1 525.2877197265625 MULTI HCD FTMS 0 0 0 13907 249632.890625 0.9299202992227821 -2 0.04541778564453125 7 NaN NaN 1 V{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 1.9947 0 0 191.108746525526 0 191.108746525526 0 3.0102999566398125 0 0 0 0 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.9947 - 14 + NaN NaN 122526.3 NaN 10876 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13915 61.824 NaN 349500 35 0 66839 0.261 + 17880 MIIEDETEF 9 76 571.7501660012792 1141.4857790693584 2 571.749755859375 MULTI HCD FTMS 0 0 0 13907 106942.6328125 0.5523584266126494 1 -0.037353515625 8 Oxidation (M) _M(Oxidation (M))IIEDETEF_ ENSG00000137200|ENST00000373451|CMTR1 46.020951573049366 0.037705236580089195 1 TE{M(Oxidation (M))|F} 3 6 38.94 0 0 3.4114 0 0 746.3148623440434 0 746.3148623440434 0 12.74227503252014 0 0 0 1 0 0.4247425010840047 0 + TE{M(Oxidation (M))|F} 3.4114 + + 170 NaN NaN 137425.6 NaN 10877 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13916 61.828 NaN 118420 35 0 13377 0.264 -1 0 49 424.08152088159693 NaN 0 423.8515930175781 PEAK HCD FTMS 0 0 0 13907 95440.40625 0.760255008749263 3 -0.08614730834960938 9 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107738.1 NaN 10878 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13917 61.831 NaN 124040 35 0 40578 0.261 + 28093 THLRTLIHWL 10 45 645.3781855464548 NaN 0 645.3786010742188 PEAK HCD FTMS 0 0 0 13907 75126.1796875 1 0 0 10 Unmodified _THLRTLIHWL_ nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 1.4819007175156935 0.33891598740166873 1 YSY 3 10 21.682 0 0 1.6825 0 0 131.2184895053761 741.3351534479124 872.5536429532885 0 0 0 0 0 0 0 1 0 YSY 1.6825 - 20 + NaN NaN 107293.9 NaN 10879 3036 13907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13919 61.836 NaN 1324700 35 0 219000 0.327 + 13069 KYLDVKFEYL 10 80 439.90766346480865 1316.701160994626 3 440.2427062988281 MULTI HCD FTMS 0 0 0 13918 197448.25 0.116063308702114 20 -0.4927711486816406 1 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 15.538449434065043 0.365770603482074 1 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 9 7 44.307 0 0 3.365 0 0 116.14776043143213 0 116.14776043143213 0 2.5797884053066156 0 0 0 0.5 0 0.7302046884880937 0.4247425010840047 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 3.365 - 281 + NaN NaN 284575.9 NaN 10880 3037 13918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13920 61.84 NaN 339990 35 0 212520 0.261 + 34044 YNCCCGNF 8 50 462.1465470450607 NaN 0 462.14654541015625 PEAK HCD FTMS 0 0 0 13918 224373.890625 0.5424338340772823 25 -0.6325874328613281 2 Unmodified _YNCCCGNF_ ENSG00000186980|ENST00000334160|KRTAP23-1 0.7936320650641473 0.38822285293237185 1 {M(Oxidation (M))|F} 1 7 5.4846 0 0 0.59467 0 0 610.1318564418808 162.05585657291252 772.1877130147933 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.59467 + + 6 + NaN NaN 134050.8 NaN 10881 3037 13918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13921 61.844 NaN 632970 35 0 111770 0.261 + 27367 SYSMIVNNL 9 89 528.7551482305643 1055.4957435279284 2 528.7552490234375 MULTI HCD FTMS 0 0 0 13918 268790.78125 0.2308130847943016 21 -0.5211982727050781 3 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 114.6490535036381 0.0021834323520089267 1 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 50.089 0 0 4.7456 4.7456 85.818 0 0 0 36.70003260253354 3.8950677260325506 3.8950677260325506 9.208187539523749 0 1.7856668758921828 0 0 0.8921590589602532 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};[{M(Oxidation (M))|F}V]S{I|L}{[{M(Oxidation (M))|F}C]|[YS]}NN{I|L};[{M(Oxidation (M))|F}V]S{I|L}{[{M(Oxidation (M))|F}C]|[YS]}GGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}V[{M(Oxidation (M))|F}V]{I|L} 4.7456;3.8732;1.9403;1.0679;0.39083 +;-;-;-;- + 461 + NaN NaN 176382.2 NaN 10882 3037 13918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13922 61.847 NaN 276780 35 0 28129 0.261 + 24570 RYLNELKWSF 10 64 452.57496816219697 1354.703075086791 3 452.9093017578125 MULTI HCD FTMS 0 0 0 13918 52648.35546875 0.23882560911965817 4 -0.09424972534179688 4 Unmodified _RYLNELKWSF_ ENSG00000163517|ENST00000295757|HDAC11;ENST00000475818.5_1_3:13522761-13543460:+|nuORF 33.63211310249256 0.2006665665698524 1 [YR]{I|L}NE{I|L}WKS{M(Oxidation (M))|F} 10 2 + 71.362 0 0 5.2677 5.2677 85.958 0 0 0 5.764837301042718 51.897737521010825 5.764837301042718 9.164539485499255 0 2.5682503180159344 0 0.4247425010840047 0.3807196863200844 [YR]{I|L}NE{I|L}WKS{M(Oxidation (M))|F};[YR]{I|L}GGE{I|L}WKS{M(Oxidation (M))|F};[YR]D[Q{I|L}]{I|L}WKS{M(Oxidation (M))|F} 5.2677;4.5912;4.3667 -;-;- 95 NaN NaN 117490.7 NaN 10883 3037 13918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13923 61.85 NaN 392100 35 0 52537 0.261 + 25469 SFDGIIAMM 9 66 508.72498263151743 1015.4354123298349 2 508.7250671386719 MULTI HCD FTMS 0 0 0 13918 100188.296875 0.38808598808285294 9 -0.19815826416015625 5 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 42.09456458481378 0.05572955244001856 1 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 5 40.94 0 0 4.0318 0 0 331.15611464668126 0 331.15611464668126 0 15.578278345927217 0 0 0 1.3494850021680094 0 0.4247425010840047 0 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0318 - 322 NaN NaN 145500.6 NaN 10884 3037 13918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13924 61.854 NaN 39065 35 0 4966.1 0.261 -1 PDHRIGGY 8 34 478.73272358027185 NaN 0 479.1771240234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PDHRIGGY_ ENSG00000077782|ENST00000447712|FGFR1;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;FGFR1|p.R209H|1|0.24|ENSG00000077782|chr8:38426241-38426241|C/T|missense_variant;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96319.6 NaN 10885 3037 13918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13926 61.859 NaN 1783100 35 0 155470 0.327 + 27066 SYMGHFDLL 9 112 549.7497688734081 1097.4849848136162 2 549.7501831054688 MULTI HCD FTMS 0 0 0 13925 1026648.125 0.09911418556209764 52 -1.3261833190917969 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 92.4914307365334 0.004460681868130716 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L} 9 2 + 55.227 0 0 5.0321 5.0321 87.463 0 0 0 8.654396981659438 9.092160346844516 8.654396981659438 10.490643297394662 0 1.7000612056866313 2 0.8807196863200845 0 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}{I|L}EAW{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}{I|L}EWA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}VVDW{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT] 5.0321;4.0763;3.2843;3.01;2.774;2.6313;2.6137;2.2187;2.0691;1.928 -;+;-;-;-;-;-;-;-;- + 4197 + NaN NaN 360788.5 NaN 10886 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13927 61.863 NaN 815300 35 0 40121 0.261 -1 DNADEMIKTL 10 108 583.2742064420759 1164.5338599509516 2 583.2742919921875 MULTI HCD FTMS 0 0 0 13925 767960.5625 0.24656020021844816 15 -0.35540771484375 2 Oxidation (M) _DNADEM(Oxidation (M))IKTL_ tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 34.93206674587334 0.18938571726943593 1 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 84.024 0 0 7.2152 7.2152 93.12 0 0 0 17.108157047234428 43.52211747517542 17.108157047234428 19.247425010840047 0 2.6237125054200234 2 1.1923239215968577 0 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L} 7.2152;5.5624 -;- 704 NaN NaN 206260.7 NaN 10887 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13928 61.867 NaN 1115500 35 0 98762 0.261 + 593 APFKFDMEL 9 96 557.268033382246 1112.521513831292 2 557.2681274414062 MULTI HCD FTMS 0 0 0 13925 870824.8125 0.9543686974233025 -6 0.15073013305664062 3 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 133.0521902211835 0.0004198702180815479 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 97.15 0 0 8.7324 8.7324 90.256 0 0 0 5.555322366546221 5.555322366546221 5.555322366546221 5.555322366546221 0 3.110924374808178 0 2.221848749616356 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AP{M(Oxidation (M))|F}YQV{M(Oxidation (M))|F}E{I|L} 8.7324;8.2331;7.7326;7.5131;7.2298;6.7293;6.6308;6.5097;6.2685;6.1861 +;-;+;-;-;-;-;-;-;- + 3067 + NaN NaN 246332.8 NaN 10888 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13929 61.87 NaN 819550 35 0 124830 0.262 -1 YDSCCVIDKIT 11 76 439.5336217219572 1315.5790357660717 3 439.5338439941406 MULTI HCD FTMS 0 0 0 13925 177932.9375 0.05456843636240964 27 -0.6771202087402344 4 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 18.3397198061782 0.2972878317988595 1 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 -1 74.077 0 0 5.6308 0 0 0 128.07161890201408 128.07161890201408 61.312777702569186 0 0 0 0 1.8494850021680094 2 0.75 0 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 5.6308 - 230 + NaN NaN 206305 NaN 10889 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13930 61.873 NaN 776390 35 0 102230 0.261 + 31510 VYGFLRNGF 9 85 536.7825132891246 1071.5504736450491 2 536.7824096679688 MULTI HCD FTMS 0 0 0 13925 246450.109375 0.2645073304962354 5 -0.10711288452148438 5 Unmodified _VYGFLRNGF_ ENST00000343327.6_1_9:115030452-115095785:-|nuORF 112.59319219568356 0.00251905749371435 1 VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F} 9 0 + 98.414 0 0 9.1842 9.1842 93.164 0 0 0 77.22357194224834 16.478174818886373 16.478174818886373 9.208187539523749 0 2.7034021960761265 2 0 0.4247425010840047 + + VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VY{[ET]|[MV]}{I|L}VMA{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VY[KG]WY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YV]G{M(Oxidation (M))|F}{I|L}{[ET]|[MV]}M{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VV{M(Oxidation (M))|F}GM{I|L};[YR]{M(Oxidation (M))|F}{I|L}GVNG{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}VVANG{M(Oxidation (M))|F} 9.1842;8.3249;7.2509;6.7321;6.3916;4.7998;4.7502;4.5365;3.8275;3.7063 +;-;+;-;-;-;-;-;-;- + 1299 + NaN NaN 200507.9 NaN 10890 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13931 61.877 NaN 113160 35 0 20184 0.261 -1 YSCLIFLPSFF 11 38 465.2346032197391 1392.6819802594173 3 465.2347412109375 MULTI HCD FTMS 0 0 0 13925 10026.6240234375 0.09664521581254829 4 -0.09106826782226562 6 Carbamidomethyl (C) _YSC(Carbamidomethyl (C))LIFLPSFF_ ENSG00000203737|ENST00000367685|GPR52 2.6312355333042263 0.4073809613003177 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 99705.8 NaN 10891 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13932 61.88 NaN 84479 35 0 7276.1 0.261 + -1 VICAWLLL 8 44 494.2882995605469 NaN 0 494.2882995605469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _VIC(Carbamidomethyl (C))AWLLL_ REV__ENSG00000187533|ENST00000344526|PRR27 2.8892196856762586 0.38822285293237185 1 D 1 -1 6.9897 0 0 0.70849 0 0 132.14261318505902 736.3651217096311 868.5077348946902 0 0 0 0 0 0 0 0 0 D 0.70849 - 2 + NaN NaN 91875.8 NaN 10892 3038 13925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13934 61.885 NaN 613010 35 0 57323 0.327 + 5840 FPDAVKQIL 9 82 515.8001148454115 1029.5856767576229 2 515.8001708984375 MULTI HCD FTMS 0 0 0 13933 369971.59375 0.5999362822803423 6 -0.11984634399414062 1 Unmodified _FPDAVKQIL_ ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;nc|ENSG00000142733|O95382-3|MAP3K6 83.42873516780209 0.004742894019233849 1 {M(Oxidation (M))|F}PDAVKQ{I|L}{I|L} 9 0 + 61.314 0 0 5.9552 5.9552 87.88 0 0 0 26.15865011156764 5.85393343170842 5.85393343170842 9.208187539523749 0 2.221848749616356 0 0 0.3054621874040891 + + {M(Oxidation (M))|F}PDAVKQ{I|L}{I|L};{M(Oxidation (M))|F}PDAVK[AG]{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVKQ{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VKQ{I|L}{I|L};[DP]AV{M(Oxidation (M))|F}KQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK[AG]{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VK[AG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]VK[KP]E;[DP]{M(Oxidation (M))|F}AVKAAV{I|L};[DP]AV{M(Oxidation (M))|F}K[AG]{I|L}{I|L} 5.9552;5.0609;4.8394;4.1828;3.9895;3.9451;3.2884;3.2558;3.2125;3.0952 +;-;-;-;-;-;-;-;-;- + 633 + NaN NaN 183701.7 NaN 10893 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13935 61.889 NaN 870170 35 0 112810 0.261 -1 0 90 593.7351433434706 1185.455733753741 2 593.7346801757812 MULTI HCD FTMS 0 0 0 13933 259922.046875 0.10446778824700416 16 -0.3850250244140625 2 NaN NaN 1 YY{I|L}Q 4 -1 23.02 0 0 1.9419 0 0 0 615.163716502041 615.163716502041 -1.403018563800984 0 -1.403018563800984 0 0 0 2 0 0 YY{I|L}Q 1.9419 - 188 NaN NaN 220573.4 NaN 10894 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13936 61.893 NaN 718090 35 0 67953 0.261 + 17881 MIIEDETEF 9 75 571.7501660012792 1141.4857790693584 2 571.769287109375 MULTI HCD FTMS 0 0 0 13933 164313.21875 0.8486773571353633 4 -0.08102798461914062 3 Oxidation (M) _M(Oxidation (M))IIEDETEF_ ENSG00000137200|ENST00000373451|CMTR1 52.268347100219714 0.028397529699942435 1 GC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 8 51.865 0 0 4.5436 0 0 74.0581140253956 0 74.0581140253956 0 20.121155736184022 0 0 0 0.5 0 1.031234684152075 0 GC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.5436 - 567 + NaN NaN 198409.8 NaN 10895 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13937 61.896 NaN 451490 35 0 50579 0.261 + 7739 FYMDTSHLF 9 84 588.7553316353258 1175.4961103374515 2 588.7554931640625 MULTI HCD FTMS 0 0 0 13933 118990.09375 0.408762436328179 -8 0.19261932373046875 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 100.37149154755038 0.004254194004462789 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 67.268 0 0 5.7225 5.7225 90.357 0 0 0 53.53392749119463 7.064083326475128 7.064083326475128 18.555818204543385 0 2.2658715643802765 0 0.9749073637206092 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DP{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}D[NG][PG]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}D[NG][VP]A{M(Oxidation (M))|F} 5.7225;4.1439;4.0207;3.426;2.8461 +;+;-;-;- + 372 + NaN NaN 157641.8 NaN 10896 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13938 61.899 NaN 145810 35 0 15099 0.264 -1 PERLEMMKY 9 43 410.19636506685197 1227.5672658007559 3 410.1961975097656 MULTI HCD FTMS 0 0 0 13933 57647.05078125 0.4583805712532124 4 -0.08102798461914062 5 2 Oxidation (M) _PERLEM(Oxidation (M))M(Oxidation (M))KY_ tr|U7T0G0|U7T0G0_FUSNULargeribosomalsubunitproteinbL33OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmGPE=3SV=1 8.97624648632007 0.2828035605319045 1 E 1 -1 19.732 0 0 1.6074 0 0 603.2435383701303 492.25773145921215 1095.5012698293424 0 0 0 0 0 1 0 0.4247425010840047 0 E 1.6074 + + 19 NaN NaN 100694.1 NaN 10897 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13939 61.903 NaN 223840 35 0 66632 0.261 -1 0 45 610.1832456658346 609.1759691992346 1 610.1847534179688 MULTI HCD FTMS 0 0 0 13933 64143.31640625 0.4262051548207023 5 -0.10047531127929688 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124398.3 NaN 10898 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13940 61.906 NaN 135100 35 0 39387 0.261 + 25021 RYVYYYSYL 9 47 645.3145271005028 NaN 0 645.3157958984375 PEAK HCD FTMS 0 0 0 13933 44216.13671875 0.729356618538957 2 -0.0454559326171875 7 Unmodified _RYVYYYSYL_ ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN;PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant 24.020572477871973 0.16041128140741606 1 YSY 3 6 32.747 0 0 2.5413 0 0 131.101147851593 741.3377779596311 872.4389258112242 0 0 0 0 0 0.8807196863200843 0 0.9247425010840047 0 + YSY 2.5413 + + 15 + NaN NaN 121283.6 NaN 10899 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13941 61.909 NaN 96736 35 0 5519.4 0.261 -1 DCSCRLCRKK 10 37 634.805113940598 1267.5956749479958 2 635.789794921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _DCSCRLC(Carbamidomethyl (C))RKK_ ENSG00000223591|ENST00000602548|CENPVL1;ENSG00000224109|ENST00000417339|CENPVL3;ENSG00000283093|ENST00000634648|CENPVL2 1.3295316138638542 0.46826628246186464 1 EKK 3 -1 10.458 0 0 0.82499 0 0 864.3629627912125 0 864.3629627912125 0 3.4678748622465623 0 0 0 0 0 0 0 EKK 0.82499 - 2 NaN NaN 92855.4 NaN 10900 3039 13933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13943 61.914 NaN 23161000 35 0 3033600 0.327 + 2890 DYSPYFKTI 9 108 567.2793386389775 1132.544124344755 2 567.2797241210938 MULTI HCD FTMS 0 0 0 13942 17557088 0.09964657059053224 17 -0.4146308898925781 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 203.63889746883072 1.2993995354712843E-17 1 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 118.91 0 0 10.499 10.499 90.435 0 0 0 2.679425186737518 2.679425186737518 2.679425186737518 2.679425186737518 0 3.048455006504028 2 2.3472711111689564 0.28872548999643577 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}SPYT{M(Oxidation (M))|F}K{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPYT{M(Oxidation (M))|F}{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}SPYT[K{I|L}]{M(Oxidation (M))|F} 10.499;10.262;9.1373;8.3208;7.9197;7.8365;7.1957;6.6189;5.9781;5.8983 +;+;-;-;-;-;-;-;-;- + 4628 + NaN NaN 756694.2 NaN 10901 3040 13942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13944 61.918 NaN 894530 35 0 104380 0.261 + 13303 KYMDVQFDF 9 71 604.7680796891424 1207.5216064450847 2 604.7684326171875 MULTI HCD FTMS 0 0 0 13942 500129.34375 0.09446224111880852 52 -1.30621337890625 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 71.70789743142352 0.008535567138151097 1 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 70.389 0 0 5.8292 5.8292 84.826 0 0 0 4.341153291726982 6.584165411656073 4.341153291726982 4.341153291726982 0 1.5 1.0457574905606752 0.3494850021680094 0.7614393726401688 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}DK{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[AG]VY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 5.8292;5.4697;5.0667;4.7072;4.5782;4.3609;4.1318;4.0764;3.5984;3.3138 -;+;-;-;-;-;-;-;-;- + 848 NaN NaN 226615.6 NaN 10902 3040 13942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13945 61.922 NaN 514390 35 0 107560 0.264 + 2268 DLLLLKDHPF 10 44 404.23236799717034 1209.675274591711 3 404.232666015625 MULTI HCD FTMS 0 0 0 13942 104637.9921875 0.07823694490793534 -7 0.19016647338867188 3 Unmodified _DLLLLKDHPF_ REV__ENSG00000167721|ENST00000301364|TSR1 6.623454094837244 0.4402447091689353 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 6 -1 42.14 0 0 3.4836 0 0 0 524.2624583979782 524.2624583979782 27.447274948966935 0 0 0 0 0 1.5228787452803376 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 3.4836 - 56 + NaN NaN 168240.6 NaN 10903 3040 13942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13946 61.925 NaN 131210 35 0 8946.1 0.261 -1 MPMQDIKMIL 10 60 626.310502773955 1250.60645261471 2 626.3109130859375 MULTI HCD FTMS 0 0 0 13942 35818.83984375 0.14657403552717063 6 -0.12001800537109375 4 2 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKMIL_ ENSG00000185686|ENST00000405655|PRAME 14.405379775768559 0.37636895476610294 1 KM{I|L}{I|L} 4 -1 27.027 0 0 2.1611 0 0 747.2930775373062 0 747.2930775373062 0 19.948500216800937 0 0 0 0.2614393726401688 0 0 0 KM{I|L}{I|L} 2.1611 + + 36 NaN NaN 100748.7 NaN 10904 3040 13942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13948 61.93 NaN 954330 35 0 95750 0.327 + 2882 DYSKYPFEV 9 105 574.26863751012 1146.52272208704 2 574.2688598632812 MULTI HCD FTMS 0 0 0 13947 495424.875 0.08989236591940358 18 -0.4465065002441406 1 Unmodified _DYSKYPFEV_ ENSG00000158481|ENST00000368170|CD1C 25.399314129420986 0.14091189997036632 1 SPY{M(Oxidation (M))|F}KT{I|L} 7 7 60.868 0 0 5.3089 0 0 292.069419124415 0 292.069419124415 0 6.910772804864038 0 0 0 1.9322333069283655 0 1.6351518780601921 0 SPY{M(Oxidation (M))|F}KT{I|L} 5.3089 - 891 NaN NaN 236533.3 NaN 10905 3041 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13949 61.935 NaN 2320500 35 0 322220 0.261 + 23431 RLPEEWSQW 9 103 615.7989279497837 1229.5833029663672 2 615.7987670898438 MULTI HCD FTMS 0 0 0 13947 624249.0625 0.32630806180103633 6 -0.12014389038085938 2 Unmodified _RLPEEWSQW_ ENSG00000106211|ENST00000248553|HSPB1 71.70789743142352 0.008535567138151097 1 [R{I|L}][EP]EWSQW 9 0 + 69.649 0 0 5.6644 5.6644 87.383 0 0 0 8.720478788738028 8.720478788738028 8.720478788738028 9.208187539523749 0 2.094187677400525 1.3010299956639813 0.7614393726401688 0 + + [R{I|L}][EP]EWSQW;[R{I|L}][EP]EWS[AG]W;[R{I|L}][EP]T[WD]QW;[R{I|L}][EP]EW{[WT]|[RM]}N;[R{I|L}][HM]S{[DA]|[EG]}SQ[VS];[YT][RV][YQ]SQW;[YT][YN][R{I|L}]SQW;{[QS]|[NT]}YY[R{I|L}]SQW;[WE][EP][R{I|L}]SQW;{[QS]|[NT]}N{I|L}{I|L}[EP][C(Carbamidomethyl (C))R]N 5.6644;4.9155;4.4487;3.2854;3.2739;2.8257;2.7548;2.4004;2.1011;1.4104 +;-;-;-;-;-;-;-;-;- + 742 NaN NaN 437097.8 NaN 10906 3041 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13950 61.938 NaN 493760 35 0 55633 0.261 + 8548 HANKDCLAAEL 11 90 592.7900922859898 NaN 0 592.8010864257812 PEAK HCD FTMS 0 0 0 13947 19907.125 1 0 0 3 Unmodified _HANKDCLAAEL_ REV__ENSG00000187105|ENST00000553558|HEATR4 10.150570793230772 0.3133258973391819 1 Y{I|L}ND{I|L}D 6 -1 30.667 0 0 2.5911 0 0 163.0447708983482 284.17231165103755 447.21708254938574 0 0 0 0 0 0 0 0.2614393726401688 0.3807196863200844 Y{I|L}ND{I|L}D 2.5911 - 438 + NaN NaN 157908 NaN 10907 3041 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13951 61.942 NaN 367440 35 0 51843 0.261 + 8361 GYKQYWCTF 9 69 598.2653462772812 1194.5161396213623 2 598.244140625 MULTI HCD FTMS 0 0 0 13947 60029.11328125 0.6501864402362282 1 -0.019527435302734375 4 Unmodified _GYKQYWCTF_ ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-2|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2 24.990960013464015 0.14443998892849796 1 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 9 39.09 0 0 3.2725 0 0 64.04813003806233 0 64.04813003806233 0 -5.105450102066129 -5.105450102066129 0 0 0 0 1.6237125054200234 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3.2725 - 262 + NaN NaN 142116.1 NaN 10908 3041 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13952 61.945 NaN 283940 35 0 13060 0.261 -1 LRSWPWCNK 9 73 623.8114861457387 NaN 0 623.796142578125 PEAK HCD FTMS 0 0 0 13947 22468.53515625 0.5155752358026324 -2 0.0454559326171875 5 Carbamidomethyl (C) _LRSWPWC(Carbamidomethyl (C))NK_ nc|ENSG00000024862|Q8IWP9|CCDC28A 6.723162845929126 0.26266733336404485 1 QSWE 4 -1 14.949 0 0 1.2001 0 0 220.1158336595509 492.25826646010324 712.3741001196541 0 0 0 0 0 0 0 0 0 QSWE 1.2001 - 124 + NaN NaN 131969.1 NaN 10909 3041 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13954 61.95 NaN 528930 35 0 136320 0.327 -1 HPWMQDVLL 9 64 577.7866920795215 1153.5588312258428 2 577.7866821289062 MULTI HCD FTMS 0 0 0 13953 227213.953125 0.5135522091828266 -11 0.2576026916503906 1 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 29.081581746732265 0.1154664336125038 1 {[YD]|[{M(Oxidation (M))|F}M]}[WR][CS]V{I|L}{I|L} 9 -1 + 47.227 0 0 4.094 4.094 89.555 0 0 0 17.534241220071536 36.28485385398854 17.534241220071536 47.226978824635566 0 0.5 1.6989700043360187 0.6307196863200843 0.4247425010840047 {[YD]|[{M(Oxidation (M))|F}M]}[WR][CS]V{I|L}{I|L} 4.094 - 43 NaN NaN 167089.9 NaN 10910 3042 13953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13955 61.954 NaN 195680 35 0 29797 0.262 + 3809 EPEPGEPLL 9 50 490.750556054329 979.4865591754581 2 490.7508239746094 MULTI HCD FTMS 0 0 0 13953 146685.078125 0.4814925921849405 10 -0.24480056762695312 2 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 16.942295170755138 0.21397866736869717 1 S{I|L} 2 8 30.217 0 0 3.0849 0 0 761.3615589826187 0 761.3615589826187 0 15.612431371158735 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 3.0849 - 34 NaN NaN 128546 NaN 10911 3042 13953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13956 61.958 NaN 139670 35 0 21870 0.261 + 16037 LPSEDPYQL 9 45 531.2613947767766 1060.508236620353 2 531.26220703125 MULTI HCD FTMS 0 0 0 13953 38849.00390625 0.029007602020616086 30 -0.7887382507324219 3 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 10.073929032068715 0.27331982688540024 1 Q{I|L} 2 7 25.217 0 0 2.3778 0 0 801.3546845122163 0 801.3546845122163 0 5.752574989159953 0 0 0 0.4247425010840047 0 0 0 + Q{I|L} 2.3778 + + 27 NaN NaN 100545.7 NaN 10912 3042 13953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13957 61.961 NaN 78880 35 0 8561.7 0.261 -1 ADCFRCCDCSA 11 44 455.48921674283207 NaN 0 455.4895324707031 PEAK HCD FTMS 0 0 0 13953 14063.7080078125 0.6214335153459318 1 -0.01604461669921875 4 3 Carbamidomethyl (C) _ADCFRC(Carbamidomethyl (C))C(Carbamidomethyl (C))DC(Carbamidomethyl (C))SA_ ENSG00000106683|ENST00000336180|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;nc|ENSG00000106683|P53667-3|LIMK1 0.40826533853263924 0.34096201227758716 1 HR 2 -1 6.1979 0 0 0.68186 0 0 98.65346903078292 514.1284281105985 612.7818971413815 0 0 0 0 0 0 0 0 0 HR 0.68186 - 9 + NaN NaN 101799.6 NaN 10913 3042 13953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13959 61.966 NaN 236010 35 0 22275 0.327 -1 LRSDPDDARAM 11 65 631.7937039303056 1261.572854927411 2 631.7932739257812 MULTI HCD FTMS 0 0 0 13958 127880.3203125 0.26305717250632077 8 -0.19264602661132812 1 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 11.494710602746466 0.35692862141139436 1 SQ{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 28.06 0 0 2.2242 0 0 810.4024977668226 0 810.4024977668226 0 6.121506059964545 0 0 0 0.7614393726401688 0 0.4247425010840047 0 SQ{[MS]|[{M(Oxidation (M))|F}A]} 2.2242 - 247 NaN NaN 113681.8 NaN 10914 3043 13958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13960 61.97 NaN 280200 35 0 30477 0.261 + -1 DKSSMTECTL 10 68 586.2529085149123 1170.4912640966245 2 586.253173828125 MULTI HCD FTMS 0 0 0 13958 36678.9765625 0.037095662869598485 20 -0.5155830383300781 2 Carbamidomethyl (C) _DKSSMTEC(Carbamidomethyl (C))TL_ REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF 8.745405648335112 0.42901288225909884 1 DC(Carbamidomethyl (C)) 2 -1 16.198 0 0 1.3839 0 0 0 892.3932589166624 892.3932589166624 3.552713678800501E-15 0 0 0 0 0 0 0 0 DC(Carbamidomethyl (C)) 1.3839 - 24 + NaN NaN 132459.7 NaN 10915 3043 13958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13961 61.974 NaN 156450 35 0 9859.7 0.261 + 10752 IRWEEPYHD 9 53 622.7910324002158 1243.5675118672316 2 622.7881469726562 MULTI HCD FTMS 0 0 0 13958 42127.18359375 0.1508643727965347 12 -0.3039970397949219 3 Unmodified _IRWEEPYHD_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 6.723162845929126 0.3000504726104499 1 [R{I|L}][EP][WE]SQ{[CP]|[EA]} 10 6 + 35.915 0 0 2.8881 2.8881 88.136 0 0 0 22.727562184969372 31.478174818886373 22.727562184969372 35.915149811213496 0 0.5 1.6989700043360187 0 0 [R{I|L}][EP][WE]SQ{[CP]|[EA]} 2.8881 - 23 NaN NaN 120324.7 NaN 10916 3043 13958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13962 61.977 NaN 154370 35 0 5850.1 0.261 + -1 LRCLDTHCMQ 10 65 638.7839767697982 NaN 0 638.7838745117188 PEAK HCD FTMS 0 0 0 13958 57643.08984375 0.2732714909874264 8 -0.19264602661132812 4 Carbamidomethyl (C) _LRC(Carbamidomethyl (C))LDTHCMQ_ REV__ENSG00000089847|ENST00000318934|ANKRD24;REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 15.248480904072842 0.31912431859025153 1 WE 2 -1 15.459 0 0 1.2119 0 0 465.1489617212157 492.25763879947505 957.4066005206907 0 0 0 0 0 0.5994850021680094 0 0 0 WE 1.2119 - 72 + NaN NaN 113891.7 NaN 10917 3043 13958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13963 61.98 NaN 373100 35 0 29646 0.262 + 10162 IFSNVRINL 9 95 538.3164837562622 1074.6184145793243 2 538.3152465820312 MULTI HCD FTMS 0 0 0 13958 96201.2265625 0.9154497043984754 2 -0.038818359375 5 Unmodified _IFSNVRINL_ ENSG00000105974|ENST00000341049|CAV1;nc|ENSG00000105974|Q03135-2|CAV1 61.60191391372663 0.015340508911304802 1 {I|L}{M(Oxidation (M))|F}SNVR{I|L}N{I|L} 9 0 + 47.176 0 0 4.39 4.39 85.272 0 0 0 21.835108682486542 1.9374882936472417 1.9374882936472417 9.208187539523749 0 1.524227503252014 0 0.7887254899964358 0.47151416192329076 + + {I|L}{M(Oxidation (M))|F}SNVR{I|L}N{I|L};{I|L}{M(Oxidation (M))|F}SGGVR{I|L}N{I|L} 4.39;3.5332 +;- + 750 + NaN NaN 136054.5 NaN 10918 3043 13958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13965 61.985 NaN 570010 35 0 71333 0.326 + 17987 MLDAIIENL 9 85 516.2757261347979 1030.5368993363957 2 516.27587890625 MULTI HCD FTMS 0 0 0 13964 163915.359375 0.7436155926602344 -8 0.18662261962890625 1 Unmodified _MLDAIIENL_ REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant 26.88365393820708 0.12808753336095696 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQN 8 -1 44.646 0 0 4.3323 0 0 0 128.07449172093428 128.07449172093428 22.961242502342554 0 0 0 0 0 1.6989700043360187 0.7302046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQN 4.3323 - 487 NaN NaN 172480.4 NaN 10919 3044 13964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13966 61.99 NaN 466550 35 0 68132 0.261 + 29813 VENCHETLI 9 88 529.2504718863648 1056.4863908395296 2 529.257080078125 MULTI HCD FTMS 0 0 0 13964 14934.7373046875 0.4499061717975735 -4 0.07112884521484375 2 Unmodified _VENCHETLI_ REV__ENSG00000162923|ENST00000414423|WDR26;REV__nc|ENSG00000162923|Q9H7D7-2|WDR26;REV__nc|ENSG00000162923|Q9H7D7|WDR26 18.1463463914782 0.20357593197100715 1 {I|L}VND{I|L} 5 -1 35.584 0 0 3.3682 0 0 484.161912986525 0 484.161912986525 0 4.615005783267996 0 0 0 0 0 0 0.23965182871044374 {I|L}VND{I|L} 3.3682 - 554 NaN NaN 155103 NaN 10920 3044 13964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13967 61.993 NaN 217740 35 0 93481 0.261 -1 0 53 525.2881288497448 524.2808523831447 1 525.2885131835938 MULTI HCD FTMS 0 0 0 13964 210905.4375 0.7856546749776345 6 -0.15687942504882812 3 NaN NaN 1 [YV]A 3 -1 19.666 0 0 3.751 0 0 0 188.08560637167912 188.08560637167912 9.20818753952375 0 0 0 0 0 1.5228787452803376 0 0 [YV]A 3.751 - 23 NaN NaN 114877.6 NaN 10921 3044 13964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13968 61.996 NaN 162330 35 0 12233 0.261 + -1 CCCPKYCSSQ 10 59 450.4952143262436 1348.463813578931 3 450.4947814941406 MULTI HCD FTMS 0 0 0 13964 98443.7265625 1 0 0 4 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))PKYC(Carbamidomethyl (C))SSQ_ REV__ENSG00000185940|ENST00000399676|KRTAP5-5 0.776531954647913 0.4711933975711956 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.0008 0 0 1183.384908404906 0 1183.384908404906 0 -0.4845500650402812 -0.4845500650402812 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0008 - 16 + NaN NaN 107225.9 NaN 10922 3044 13964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13969 62 NaN 85064 35 0 4284.6 0.261 -1 0 47 513.0849320682078 NaN 0 512.9707641601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85897.8 NaN 10923 3044 13964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13971 62.005 NaN 1368000 35 0 133490 0.327 + 27067 SYMGHFDLL 9 110 549.7497688734081 1097.4849848136162 2 549.750244140625 MULTI HCD FTMS 0 0 0 13970 821387.3125 0.07929799171403316 59 -1.5775871276855469 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 68.08070601005525 0.009709267492204555 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 43.834 0 0 3.994 3.994 87.106 0 0 0 4.760910282354054 19.27053264989243 4.760910282354054 15.458248768983317 0 1.7302046884880937 0 0.7614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};[{M(Oxidation (M))|F}E]EWVKN{M(Oxidation (M))|F} 3.994;2.5855;2.1974;1.7574;0.50352 +;-;-;-;- + 2741 NaN NaN 297423 NaN 10924 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13972 62.009 NaN 1052700 35 0 86287 0.261 + 594 APFKFDMEL 9 101 557.268033382246 1112.521513831292 2 557.2684326171875 MULTI HCD FTMS 0 0 0 13970 831347.25 0.9111037957349714 1 -0.02951812744140625 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 145.12958885780327 1.3974915176135797E-05 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 98.788 0 0 8.8797 8.8797 91.467 0 0 0 7.9850023609038345 7.9850023609038345 7.9850023609038345 7.9850023609038345 0 3.110924374808178 0 2.510574239612792 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AP{M(Oxidation (M))|F}{I|L}[YN]{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}YQV{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}{I|L}[YG]G{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}Y{[VA]|[{I|L}G]}G{M(Oxidation (M))|F}E{I|L} 8.8797;8.1619;7.7046;7.4419;6.6028;6.2685;6.2158;6.1941;6.1134;5.5345 +;-;+;-;-;-;-;-;-;- + 5569 + NaN NaN 239022.9 NaN 10925 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13973 62.013 NaN 629840 35 0 31796 0.261 + 2520 DSNLKIESME 10 109 583.2742064420759 1164.5338599509516 2 583.274658203125 MULTI HCD FTMS 0 0 0 13970 318127.59375 0.10213754070218044 22 -0.5869255065917969 3 Unmodified _DSNLKIESME_ REV__nc|ENSG00000069869|P46934-2|NEDD4;REV__nc|ENSG00000069869|P46934-3|NEDD4;REV__nc|ENSG00000069869|P46934|NEDD4 26.268140514670165 0.2654086933305545 1 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 79.944 0 0 6.8649 6.8649 92.701 0 0 0 11.886343361007263 59.45940619637945 11.886343361007263 21.237125054200234 0 2.6237125054200234 2 0.9604093769761876 0 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L};{[MS]|[{M(Oxidation (M))|F}A]}EEE[QA]KT{I|L};[YG]YE[YE]KT{I|L} 6.8649;5.0412;1.2647;1.0027 -;-;-;- 724 NaN NaN 188311.3 NaN 10926 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13974 62.016 NaN 1054800 35 0 69302 0.261 + 4263 EVILIDPFHK 10 77 605.8450449140216 1209.6755368948432 2 605.8451538085938 MULTI HCD FTMS 0 0 0 13970 320338.25 0.6418322794772687 -2 0.038818359375 4 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 102.5486954659897 6.036587169858109E-05 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}WD{I|L}{I|L}{I|L} 8 6 82.344 0 0 6.8071 0 0 0 225.08819807293165 225.08819807293165 40.35666875892183 0 0 0 0 1.079689690656103 1.6989700043360187 1.642159058960253 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}WD{I|L}{I|L}{I|L} 6.8071 - 683 NaN NaN 266629.7 NaN 10927 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13975 62.019 NaN 863360 35 0 126290 0.264 + 33578 YINAFLVTTYI 11 66 439.90766346480865 1316.701160994626 3 439.9078063964844 MULTI HCD FTMS 0 0 0 13970 185177.25 0.0733879662635447 33 -0.894287109375 5 Unmodified _YINAFLVTTYI_ REV__ENSG00000056291|ENST00000308744|NPFFR2;REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF;REV__nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;REV__nc|ENSG00000056291|Q9Y5X5|NPFFR2;REV__NPFFR2|p.T494Pfs*15|1|0.33|ENSG00000056291|chr4:72147721-72147721|A/-|frameshift_variant 9.764250979337305 0.37200617284565546 1 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 -1 39.614 0 0 3.0086 0 0 0 851.502872965135 851.502872965135 1.2072677877081475 0 0 0 0 0 1.6989700043360187 1.0941876774005248 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 3.0086 - 216 NaN NaN 214838.5 NaN 10928 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13976 62.023 NaN 281680 35 0 15712 0.261 + 6249 FPEYTHQLF 9 89 591.2848513486426 1180.5551497640852 2 591.285400390625 MULTI HCD FTMS 0 0 0 13970 62200.953125 0.5032169847287716 8 -0.20947647094726562 6 Unmodified _FPEYTHQLF_ ENSG00000128708|ENST00000264108|HAT1 43.77239144664712 0.04802738721622131 1 Q{I|L}{M(Oxidation (M))|F} 3 6 34.253 0 0 2.9014 0 0 774.3367849704953 0 774.3367849704953 0 9.158781176037891 0 0 0 0.805462187404089 0 0 0 + Q{I|L}{M(Oxidation (M))|F} 2.9014 + + 385 NaN NaN 126851.4 NaN 10929 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13977 62.026 NaN 111990 35 0 10504 0.263 + 24571 RYLNELKWSF 10 43 452.57496816219697 1354.703075086791 3 452.5751647949219 MULTI HCD FTMS 0 0 0 13970 43687.6953125 0.15996730296676231 16 -0.4311866760253906 7 Unmodified _RYLNELKWSF_ ENSG00000163517|ENST00000295757|HDAC11;ENST00000475818.5_1_3:13522761-13543460:+|nuORF 23.015651743759182 0.29583137589827896 1 {I|L}[WK]S{M(Oxidation (M))|F} 5 5 34.961 0 0 2.5807 0 0 675.3335055542666 0 675.3335055542666 0 27.001962355242952 0 0 0 1.4247425010840047 0 0 0 + {I|L}[WK]S{M(Oxidation (M))|F} 2.5807 + + 17 + NaN NaN 92562.5 NaN 10930 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13978 62.029 NaN 212200 35 0 15452 0.261 + 35202 YVLGPHTEF 9 63 531.7642181589331 1061.513883384666 2 532.2820434570312 MULTI HCD FTMS 0 0 0 13970 20374.146484375 0.8826134201949767 -1 0.01937103271484375 8 Unmodified _YVLGPHTEF_ REV__tr|U7SQ46|U7SQ46_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01689PE=4SV=1 8.593279151180031 0.2858735984551981 1 [YV][PG]P[MT]GQ{I|L} 10 -1 + 21.092 0 0 1.987 1.987 80.975 0 0 0 5.68636235841012 1.8177450164824336 1.8177450164824336 4.948500216800937 0 0 1.6989700043360187 0 0 [YV][PG]P[MT]GQ{I|L};[YV][PG]P[MT]V[QA];[YV][PG]P{[C(Carbamidomethyl (C))E]|[WC]}Q{I|L};[YV][PG]{[QN]|[E{I|L}]|[KN]}W[QA];{M(Oxidation (M))|F}N[PG]{[QN]|[E{I|L}]|[KN]}WS{I|L};[YV][PG]P{[WT]|[RM]}NE;[YV]{[RE]|[WV]}V[PG]NE;{M(Oxidation (M))|F}[HM]{[QN]|[E{I|L}]|[KN]}WS{I|L};[YV]H[H{I|L}][HQ]E;[HQ]{M(Oxidation (M))|F}[H{I|L}]HP{M(Oxidation (M))|F} 1.987;1.5208;1.3717;1.355;1.2618;1.254;1.0617;0.93514;0.92727;0.76138 -;-;-;-;-;-;-;-;-;- 291 NaN NaN 111190.1 NaN 10931 3045 13970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13980 62.034 NaN 932140 35 0 101560 0.327 -1 MIIEDETEF 9 89 571.7501660012792 1141.4857790693584 2 571.769775390625 MULTI HCD FTMS 0 0 0 13979 80512.8515625 0.41584867364479344 11 -0.2946128845214844 1 Oxidation (M) _M(Oxidation (M))IIEDETEF_ ENSG00000137200|ENST00000373451|CMTR1 34.10243960390752 0.09241788333544565 1 GC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 -1 56.781 0 0 4.9743 0 0 74.05516168351194 0 74.05516168351194 0 28.817365755370403 0 0 0 0.4247425010840047 0 1.0752574989159953 0 GC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.9743 - 1714 + NaN NaN 221953.1 NaN 10932 3046 13979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13981 62.039 NaN 624280 35 0 85174 0.261 -1 0 82 593.7351433434706 1185.455733753741 2 593.7353515625 MULTI HCD FTMS 0 0 0 13979 106072.375 0.04263257597261801 23 -0.6097373962402344 2 NaN NaN 1 YY{I|L}Q 4 -1 22.14 0 0 1.8676 0 0 0 615.1632570144008 615.1632570144008 -0.28151250383643855 0 -0.28151250383643855 0 0 0 2 0 0 YY{I|L}Q 1.8676 - 157 NaN NaN 181656.3 NaN 10933 3046 13979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13982 62.042 NaN 452190 35 0 80480 0.261 + 5841 FPDAVKQIL 9 70 515.8001148454115 1029.5856767576229 2 515.8001098632812 MULTI HCD FTMS 0 0 0 13979 138061.9375 0.22387763522228787 13 -0.34259796142578125 3 Unmodified _FPDAVKQIL_ ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;nc|ENSG00000142733|O95382-3|MAP3K6 59.368380827593164 0.01846506874148156 1 {M(Oxidation (M))|F}PDAVKQ{I|L}{I|L} 9 0 + 44.725 0 0 4.344 4.344 86.097 0 0 0 15.4058269257659 4.040499889340325 4.040499889340325 9.674369677984252 0 2.5673851849885576 0 0 0 + + {M(Oxidation (M))|F}PDAVKQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVKQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK[AG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]VK[KP]E 4.344;3.4044;2.51;2.0893 +;-;-;- + 256 + NaN NaN 152934.9 NaN 10934 3046 13979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13983 62.045 NaN 770220 35 0 97816 0.261 + 24131 RYAVVLNATW 10 83 596.8276653534533 1191.6407777737065 2 596.8274536132812 MULTI HCD FTMS 0 0 0 13979 194628.453125 0.18377267935340547 -4 0.084381103515625 4 Unmodified _RYAVVLNATW_ ENSG00000099194|ENST00000370355|SCD 83.42873516780209 0.0016734765818451427 1 TA{I|L}V{I|L}NATW 9 3 86.112 0 0 7.2264 0 0 204.0902313136799 0 204.0902313136799 0 80.42587241604323 0 0 0 1 0 2.2302046884880937 0.4247425010840047 TA{I|L}V{I|L}NATW 7.2264 - 623 + NaN NaN 216470.7 NaN 10935 3046 13979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13985 62.05 NaN 13818000 35 0 1783700 0.327 + 2891 DYSPYFKTI 9 113 567.2793386389775 1132.544124344755 2 567.2799072265625 MULTI HCD FTMS 0 0 0 13984 10595502 0.06013556678562672 24 -0.6585311889648438 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 203.63889746883072 1.2993995354712843E-17 1 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 117.88 0 0 10.408 10.408 90.31 0 0 0 2.4730248405664668 2.4730248405664668 2.4730248405664668 2.4730248405664668 0 3.048455006504028 2 2.1465912507003613 0.5114393726401688 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K 10.408;10.19;9.0647;8.5292;8.2932;7.9434;7.404;7.1681;6.2828;6.0469 +;+;-;-;-;-;-;-;-;- + 3932 + NaN NaN 814678.6 NaN 10936 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13986 62.055 NaN 4496000 35 0 925080 0.264 + 4264 EVILIDPFHK 10 69 404.23236799717034 1209.675274591711 3 404.2325134277344 MULTI HCD FTMS 0 0 0 13984 1337449.875 1 0 0 2 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 50.13029200064056 0.07731568956748922 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}DWD 8 4 60.431 0 0 4.9956 0 0 0 223.1455019586547 223.1455019586547 39.997906580286795 0 0 0 0 1.1861818737241734 1.0969100130080565 0.8494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}DWD 4.9956 - 278 + NaN NaN 766554.1 NaN 10937 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13987 62.058 NaN 896120 35 0 92251 0.261 + 13304 KYMDVQFDF 9 81 604.7680796891424 1207.5216064450847 2 604.7684326171875 MULTI HCD FTMS 0 0 0 13984 475866.5625 0.08987959320723934 59 -1.5841560363769531 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 61.08992128646608 0.016056751534446034 1 DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 63.875 0 0 5.2898 0 0 438.1925835782255 0 438.1925835782255 0 34.01523067564945 0 0 0 1.9247425010840047 0 0.3494850021680094 0.3252574989159953 + DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.2898 + + 2102 NaN NaN 225128 NaN 10938 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13988 62.062 NaN 615010 35 0 72840 0.261 + 7740 FYMDTSHLF 9 85 588.7553316353258 1175.4961103374515 2 588.7551879882812 MULTI HCD FTMS 0 0 0 13984 291098.40625 1 0 0 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 133.70201269244603 0.0003804610509361063 1 [Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 74.536 0 0 6.3408 6.3408 84.145 0 0 0 1.134993639681312 8.951651955316393 1.134993639681312 1.134993639681312 0 2.6549471895720984 0 1.4163865622122673 0 + + [Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]T{[{M(Oxidation (M))|F}D]|MM}SH{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Y{M(Oxidation (M))|F}TSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];[H{I|L}]SES{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}D[QA]AAP{M(Oxidation (M))|F};[YV]AA[WQ]{M(Oxidation (M))|F}YE;[YV]AA[WQ]EY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 6.3408;6.2442;4.6153;4.5285;3.7714;2.3883;2.3744;2.3672;2.3032;1.8416 +;+;-;-;-;-;-;-;-;- + 760 NaN NaN 175659.9 NaN 10939 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13989 62.065 NaN 643610 35 0 80764 0.264 + -1 LYTRMVEEMI 10 84 439.5454034116996 NaN 0 439.5336608886719 PEAK HCD FTMS 0 0 0 13984 44830.765625 1 0 0 5 2 Oxidation (M) _LYTRM(Oxidation (M))VEEM(Oxidation (M))I_ REV__ENSG00000136603|ENST00000259119|SKIL;REV__nc|ENSG00000136603|P12757-3|SKIL;REV__nc|ENSG00000136603|P12757-5|SKIL 14.957161354070239 0.32148413320461994 1 {M(Oxidation (M))|F}PDD 4 -1 16.006 0 0 1.825 0 0 267.85281746617426 132.04554163150627 399.89835909768055 0 0 0 0 0 0 0 0.6989700043360187 0 {M(Oxidation (M))|F}PDD 1.825 - 70 + NaN NaN 180536 NaN 10940 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13990 62.068 NaN 349560 35 0 50198 0.261 + 22517 QRVDSCFTNVK 11 50 432.8852168452168 NaN 0 432.8851623535156 PEAK HCD FTMS 0 0 0 13984 110539.2578125 0.5842768161483272 -12 0.2744636535644531 6 Unmodified _QRVDSCFTNVK_ REV__ENST00000284881.8_2_21:19162276-19162378:-|nuORF 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 147623.2 NaN 10941 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13991 62.072 NaN 212000 35 0 49768 0.261 + 5434 FIEENDEVL 9 47 554.2639091343366 1106.513265335473 2 554.2646484375 MULTI HCD FTMS 0 0 0 13984 98255.8984375 0.9645201221437413 -1 0.0162353515625 7 Unmodified _FIEENDEVL_ ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant 24.990960013464015 0.14443998892849796 1 ED{M(Oxidation (M))|F}H{[C(Carbamidomethyl (C))G]|[NC]}{I|L} 7 7 26.203 0 0 2.368 0 0 230.16308791328282 0 230.16308791328282 0 26.202519733105163 0 0 0 1.1989700043360187 0 0 0.4247425010840047 ED{M(Oxidation (M))|F}H{[C(Carbamidomethyl (C))G]|[NC]}{I|L} 2.368 - 38 NaN NaN 115290.2 NaN 10942 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13992 62.075 NaN 118710 35 0 10303 0.261 + -1 NQRSYCPTLL 10 50 626.310502773955 1250.60645261471 2 626.310791015625 MULTI HCD FTMS 0 0 0 13984 87075.125 0.35631953801289357 13 -0.35924530029296875 8 Carbamidomethyl (C) _NQRSYC(Carbamidomethyl (C))PTLL_ REV__ENSG00000049860|ENST00000261416|HEXB;REV__ENST00000504459.5_1_5:74009375-74016573:+|nuORF 5.296884461304476 0.4472664531305844 1 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 27.167 0 0 2.1723 0 0 731.2958241193375 0 731.2958241193375 0 24.06804392152253 0 0 0 0 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 2.1723 - 26 NaN NaN 117057.4 NaN 10943 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13993 62.078 NaN 345660 35 0 75008 0.264 -1 RMCLSRRFIMA 11 70 467.2420011621631 1398.7041740866894 3 467.2419128417969 MULTI HCD FTMS 0 0 0 13984 49233.79296875 0.56618021490306 -5 0.100616455078125 9 Oxidation (M) _RMCLSRRFIM(Oxidation (M))A_ ENST00000547505.2_1_12:44054435-44054633:+|nuORF 2.6312355333042263 0.4073809613003177 1 VAVWK 5 -1 18.315 0 0 1.3095 0 0 596.3147830728207 216.02993189029533 812.344714963116 0 0 0 0 0 0.4247425010840047 0 0 0 VAVWK 1.3095 - 66 + NaN NaN 127936.9 NaN 10944 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13994 62.082 NaN 199440 35 0 17404 0.261 -1 KYMYFTVVM 9 68 599.2878015917288 1196.5610502502575 2 599.2871704101562 MULTI HCD FTMS 0 0 0 13984 40583.15625 0.1345025508816981 21 -0.5706558227539062 10 Oxidation (M) _KYMYFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1703 0 0 932.4473863992622 0 932.4473863992622 0 14.286662482156343 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.1703 + + 149 NaN NaN 128823.9 NaN 10945 3047 13984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13996 62.086 NaN 569670 35 0 66678 0.327 + 34876 YSDYKFPDI 9 83 574.26863751012 1146.52272208704 2 574.2686767578125 MULTI HCD FTMS 0 0 0 13995 237594.96875 0.043110418853078904 25 -0.6814804077148438 1 Unmodified _YSDYKFPDI_ ENSG00000152582|ENST00000356031|SPEF2;nc|ENSG00000152582|Q9C093-4|SPEF2;NIPBL-SPEF2|2|fusion 25.399314129420986 0.14091189997036632 1 SPY{M(Oxidation (M))|F}KT{I|L} 7 5 62.462 0 0 5.4479 0 0 292.0692108365153 0 292.0692108365153 0 22.272277813228868 0 0 0 2.4291746928241125 0 1.3098943791441968 0.28872548999643577 SPY{M(Oxidation (M))|F}KT{I|L} 5.4479 - 495 NaN NaN 164649.6 NaN 10946 3048 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13997 62.091 NaN 176220 35 0 14139 0.264 -1 LYSFRDCYF 9 50 424.1911206301871 1269.5515324907612 3 424.5252685546875 MULTI HCD FTMS 0 0 0 13995 8182.39990234375 0.09927818141523757 1 -0.022853851318359375 2 Carbamidomethyl (C) _LYSFRDC(Carbamidomethyl (C))YF_ ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF;ENST00000557379.1_1_14:20768687-20774096:-|nuORF 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1503 0 0 1104.472825680994 0 1104.472825680994 0 12.129843661361406 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1503 + + 12 + NaN NaN 107634.4 NaN 10947 3048 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13998 62.095 NaN 293310 35 0 19104 0.261 + -1 EHCECHCDLF 10 66 450.4952143262436 1348.463813578931 3 450.830078125 MULTI HCD FTMS 0 0 0 13995 7384.08349609375 0.09136224312054396 1 -0.022853851318359375 3 2 Carbamidomethyl (C) _EHC(Carbamidomethyl (C))EC(Carbamidomethyl (C))HCDLF_ REV__ENSG00000119514|ENST00000375011|GALNT12 0.6976657623105312 0.47161084886498755 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1483 0 0 1183.38467952307 0 1183.38467952307 0 3.7018134474712205 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1483 + + 14 + NaN NaN 132741.7 NaN 10948 3048 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 13999 62.098 NaN 374780 35 0 22245 0.261 + 34668 YPTISLHAL 9 69 507.78446465218593 1013.5543763711719 2 507.7842712402344 MULTI HCD FTMS 0 0 0 13995 45351.45703125 0.1327415971286588 -7 0.15630340576171875 4 Unmodified _YPTISLHAL_ ENSG00000074201|ENST00000525428|CLNS1A 100.37149154755038 0.004254194004462789 1 YPT{I|L}S{I|L}HA{I|L} 9 0 + 76.597 0 0 7.5572 7.5572 93.607 0 0 0 51.19070971708595 9.137342758552691 9.137342758552691 18.54757507271316 0 2.2034021960761265 1.3979400086720375 0.5 0 + + YPT{I|L}S{I|L}HA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{I|L}S{I|L}HA{I|L};YPT{I|L}S[HA]{I|L}{I|L};[HK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.5572;5.7273;5.1899;0.80948 +;+;-;- + 370 + NaN NaN 127347.6 NaN 10949 3048 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14000 62.101 NaN 617280 35 0 129410 0.261 + 35699 YYLDWIHHY 9 71 437.2046514456232 1308.5921249370697 3 437.2044982910156 MULTI HCD FTMS 0 0 0 13995 110146.578125 0.22151355750588397 -4 0.10128402709960938 5 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 51.629811660486645 0.02929079705179888 1 YY{I|L}DW{I|L}HHY 9 0 + 100.23 0 0 7.6595 7.6595 96.17 0 0 0 91.80314108824469 14.973024840566467 14.973024840566467 66.88161603087728 0 1.6861818737241734 2 0.3807196863200844 0 + + YY{I|L}DW{I|L}HHY;YYR[YR]YYY 7.6595;2.5486 +;- + 437 + NaN NaN 178095.7 NaN 10950 3048 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14001 62.104 NaN 113630 35 0 6885.6 0.261 + 33162 YEPLDHRLR 9 48 599.8188861777561 NaN 0 599.8191528320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YEPLDHRLR_ REV__ENSG00000265817|ENST00000481490|FSBP;REV__nc|ENSG00000265817|O95073-2|FSBP 2.0597508629832335 0.2852655770354268 1 VVTR 4 -1 14.781 0 0 1.2342 0 0 166.0984871450574 573.1876314752561 739.2861186203136 0 0 0 0 0 0 0 0 0 VVTR 1.2342 - 17 + NaN NaN 95658.4 NaN 10951 3048 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14003 62.109 NaN 1046400 35 0 248390 0.327 + 4770 EYVAFSLLW 9 81 564.2911724295353 NaN 0 564.3090209960938 PEAK HCD FTMS 0 0 0 14002 7047.49072265625 0.2689400788563592 -2 0.05901336669921875 1 Unmodified _EYVAFSLLW_ REV__ENSG00000148841|ENST00000337478|ITPRIP 24.67388899826682 0.15602608049614122 1 T{M(Oxidation (M))|F}TRVV 6 -1 31.235 0 0 2.7726 0 0 149.07065727863136 271.07224451236567 420.14290179099703 0 0 0 0 0 0 0 0.6989700043360187 0 T{M(Oxidation (M))|F}TRVV 2.7726 - 561 + NaN NaN 253328.1 NaN 10952 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14004 62.114 NaN 832500 35 0 184120 0.261 + 23582 RPEDQPWLL 9 72 577.303364068702 1152.5921752042038 2 577.7865600585938 MULTI HCD FTMS 0 0 0 14002 47932.44140625 0.6692468367768568 2 -0.049060821533203125 2 Unmodified _RPEDQPWLL_ ENSG00000125651|ENST00000394456|GTF2F1 17.11289562659939 0.2125047172822487 1 TGQ[WP]{I|L}{I|L} 7 4 24.038 0 0 2.0856 0 0 339.1700916974625 0 339.1700916974625 0 12.355837201946239 0 0 0 0.9247425010840047 0 0 0.28872548999643577 TGQ[WP]{I|L}{I|L} 2.0856 - 246 NaN NaN 210292.7 NaN 10953 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14005 62.117 NaN 476400 35 0 28203 0.261 + 24003 RWFDKSFTF 9 100 617.3059297494793 1232.5973065657586 2 617.3055419921875 MULTI HCD FTMS 0 0 0 14002 200327.46875 0.6529927702497944 -2 0.05901336669921875 3 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 96.93554129104106 0.004344229100022454 1 [WR]{M(Oxidation (M))|F}DKS{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 86.308 0 0 7.0021 7.0021 93.736 0 0 0 25.263685067960232 47.12918726627608 25.263685067960232 31.039624234944725 0 1.2134679910804405 1.5228787452803376 1.5941876774005248 0.6382104921644451 + + [WR]{M(Oxidation (M))|F}DKS{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[WR]{M(Oxidation (M))|F}DKTYA{M(Oxidation (M))|F};{M(Oxidation (M))|F}HES[H{I|L}]{M(Oxidation (M))|F}A[{M(Oxidation (M))|F}V];[YT][KP]DK{[C(Carbamidomethyl (C))G]|[NC]}[HK];R{[QD]|[EN]|[WG]|[KD]|[RS]}TKD[Q{I|L}]TE;[YT]A{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[WR]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Q{I|L}]DK{[C(Carbamidomethyl (C))G]|[NC]}[HK];{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[NV]|[RG]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}A[{M(Oxidation (M))|F}V];[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[WR]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[Q{I|L}]G[W{I|L}]{M(Oxidation (M))|F}HE 7.0021;4.4839;2.0426;1.8686;1.8079;1.6536;1.0573;0.88994;0.84233;0.82789 +;-;-;-;-;-;-;-;-;- + 2268 NaN NaN 148958.1 NaN 10954 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14006 62.121 NaN 618150 35 0 140410 0.263 + 11863 KFDDGAVFL 9 72 506.26094660106827 1010.5073402689366 2 506.2608947753906 MULTI HCD FTMS 0 0 0 14002 175180.078125 0.2862375437225182 -4 0.104766845703125 4 Unmodified _KFDDGAVFL_ ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A 32.78568957990786 0.09846250359632436 1 V{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.5821 0 0 633.2762873489058 0 633.2762873489058 0 17.781512503836435 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F}{I|L} 3.5821 + + 261 NaN NaN 174811.3 NaN 10955 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14007 62.124 NaN 454070 35 0 81139 0.261 + 8084 GIRLATSMATW 11 76 603.8183943510302 1205.6222357688603 2 603.2994384765625 MULTI HCD FTMS 0 0 0 14002 31118.01171875 0.6110606254115786 -2 0.05901336669921875 5 Unmodified _GIRLATSMATW_ ENST00000599652.5_1_19:49965164-49969478:+|nuORF 18.373094154950223 0.29699704000378496 1 NATW 4 8 41.759 0 0 3.4637 0 0 715.4020863263687 0 715.4020863263687 0 28.1676069578598 0 0 0 1.579689690656103 0 0 0.3054621874040891 NATW 3.4637 - 307 NaN NaN 140731.6 NaN 10956 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14008 62.127 NaN 161890 35 0 7029.2 0.261 + -1 NYAACKYSGKD 11 58 638.7839767697982 NaN 0 638.7848510742188 PEAK HCD FTMS 0 0 0 14002 35404.7265625 0.16784496531956028 14 -0.3719978332519531 6 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 20.41453444215458 0.2532867789550098 1 A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY 5 -1 22.703 0 0 1.7799 0 0 277.10346229970645 428.19233118228755 705.295793481994 0 0 0 0 0 0.4247425010840047 0 0.9247425010840047 0 A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY 1.7799 - 40 + NaN NaN 98571.7 NaN 10957 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14009 62.131 NaN 79043 35 0 10925 0.261 -1 PSLLWCAICF 10 34 633.8031535980846 NaN 0 633.8038330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C) _PSLLWC(Carbamidomethyl (C))AIC(Carbamidomethyl (C))F_ ENSG00000170923|ENST00000641081|OR7G2 1.6526216038709556 0.33876987398426067 1 Q 1 -1 6.9897 0 0 0.55229 0 0 325.11966061238155 809.3830050104124 1134.502665622794 0 0 0 0 0 0 0 0 0 Q 0.55229 - 1 + NaN NaN 102779.1 NaN 10958 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14010 62.134 NaN 165050 35 0 24280 0.261 + -1 AGSRQWARPMA 11 52 623.8114861457387 NaN 0 623.7952270507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _AGSRQWARPM(Oxidation (M))A_ REV__ENST00000263212.9_2_22:22274709-22275219:-|nuORF 4.5288652416199255 0.32927305702295745 1 MQS 3 -1 14.693 0 0 1.1796 0 0 89.07292643293802 807.3805896536143 896.4535160865523 0 0 0 0 0 0 0 0 0 MQS 1.1796 - 14 + NaN NaN 113049.4 NaN 10959 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14011 62.137 NaN 111210 35 0 8011.2 0.261 + 19241 NKNVFINCLSS 11 43 619.8128810205825 1237.611209107965 2 619.8126831054688 MULTI HCD FTMS 0 0 0 14002 48953.6875 0.5578626751246675 -3 0.07524871826171875 9 Unmodified _NKNVFINCLSS_ ENSG00000184305|ENST00000509176|CCSER1;nc|ENSG00000184305|Q9C0I3-2|CCSER1 4.5288652416199255 0.3990586020344083 1 {I|L}NAT{[MS]|[{M(Oxidation (M))|F}A]} 6 8 25.428 0 0 2.0546 0 0 602.3117542951187 0 602.3117542951187 0 17.980734984209512 0 0 0 0.4247425010840047 0 0 0 {I|L}NAT{[MS]|[{M(Oxidation (M))|F}A]} 2.0546 - 26 NaN NaN 105162.4 NaN 10960 3049 14002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14013 62.142 NaN 576680 35 0 109240 0.327 -1 MPVLEQSVL 9 68 516.2757261347979 1030.5368993363957 2 516.2755737304688 MULTI HCD FTMS 0 0 0 14012 136071.453125 0.6172994077278561 -2 0.05559539794921875 1 Oxidation (M) _M(Oxidation (M))PVLEQSVL_ ENSG00000073614|ENST00000399788|KDM5A;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 31.26834338654808 0.10542797264966089 1 EQSV{I|L} 5 -1 47.097 0 0 4.5701 0 0 456.2364979474625 0 456.2364979474625 0 31.233265875949456 0 0 0 1.1307196863200843 0 0.9247425010840047 0 EQSV{I|L} 4.5701 + + 181 NaN NaN 172924.4 NaN 10961 3050 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14014 62.147 NaN 143920 35 0 6809.2 0.261 -1 YNAPTDHGLCI 11 54 630.7862403050943 NaN 0 630.7855224609375 PEAK HCD FTMS 0 0 0 14012 44200.4453125 0.1504776532191031 20 -0.5372543334960938 2 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 8.155526934196011 0.3189852622248163 1 A 1 -1 13.099 0 0 1.04 0 0 911.4150271416355 274.0823153131469 1185.4973424547825 0 0 0 0 0 0.8494850021680094 0 0 0 A 1.04 + + 47 + NaN NaN 111602.1 NaN 10962 3050 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14015 62.15 NaN 405380 35 0 57682 0.264 + -1 YLEKRMCTF 9 76 416.5338985411113 1246.5798662235338 3 416.53338623046875 MULTI HCD FTMS 0 0 0 14012 26013.541015625 0.5330277996266426 -3 0.09175491333007812 3 Carbamidomethyl (C) _YLEKRMC(Carbamidomethyl (C))TF_ REV__ENST00000354485.5_1_9:730997-731267:+|nuORF 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.764 0 0 1081.5008389791963 0 1081.5008389791963 0 17.808487663269972 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.764 + + 18 + NaN NaN 157047.1 NaN 10963 3050 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14016 62.154 NaN 200010 35 0 21888 0.261 + -1 DLQSVQMTSM 10 62 586.2529085149123 1170.4912640966245 2 586.253173828125 MULTI HCD FTMS 0 0 0 14012 63062.8671875 0.06377928393916768 27 -0.7272262573242188 4 2 Oxidation (M) _DLQSVQM(Oxidation (M))TSM(Oxidation (M))_ REV__ENSG00000178467|ENST00000383729|P4HTM;REV__ENST00000472301.5_1_3:49027419-49042675:+|nuORF;REV__ENST00000484115.5_1_3:49028265-49040202:+|nuORF;REV__ENST00000485210.1_1_3:49038767-49040202:+|nuORF;REV__nc|ENSG00000178467|Q9NXG6-2|P4HTM;REV__nc|ENSG00000178467|Q9NXG6-3|P4HTM 4.897010918128616 0.4493830473644964 1 D{I|L}[YC(Carbamidomethyl (C))]YK 6 -1 21.916 0 0 1.8724 0 0 0 325.11872278385005 325.11872278385005 0.48963451112506107 0 0 0 0 0 0 0 0.8807196863200843 D{I|L}[YC(Carbamidomethyl (C))]YK 1.8724 - 142 + NaN NaN 113440.2 NaN 10964 3050 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14018 62.158 NaN 1532600 35 0 115660 0.327 + 27068 SYMGHFDLL 9 123 549.7497688734081 1097.4849848136162 2 549.750244140625 MULTI HCD FTMS 0 0 0 14017 482898.125 0.046619726080772826 65 -1.7500152587890625 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 81.89019881105858 0.005240739447516426 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 49.693 0 0 4.5279 4.5279 88.826 0 0 0 7.181883935264047 31.58153150123929 7.181883935264047 22.853057777312824 0 2.115356566548286 0 0.6989700043360187 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV[{M(Oxidation (M))|F}E]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YR]{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F}HGE{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}[WM][NG]D{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[QN]|[E{I|L}]|[KN]}[VG]Q{[CA]|SS}{M(Oxidation (M))|F}[MT] 4.5279;2.4456;1.8898;1.856;1.3925;1.208;0.78727;0.53088;0.48286;0.14795 +;-;-;-;-;-;-;-;-;- + 1708 NaN NaN 325322.5 NaN 10965 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14019 62.163 NaN 902640 35 0 73028 0.261 + 595 APFKFDMEL 9 95 557.268033382246 1112.521513831292 2 557.268310546875 MULTI HCD FTMS 0 0 0 14017 510792.40625 0.5597960421075242 7 -0.19873046875 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 133.0521902211835 0.0004198702180815479 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 100.03 0 0 8.9916 8.9916 93.837 0 0 0 9.675087638780852 9.675087638780852 9.675087638780852 9.675087638780852 0 3.305462187404089 0 2.440614065464281 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AP{M(Oxidation (M))|F}{I|L}[YN]{M(Oxidation (M))|F}E{I|L} 8.9916;8.122;8.1116;7.402;7.0633;7.0529;6.581;6.3432;6.2467;6.0026 +;-;+;-;-;-;-;-;-;- + 3280 + NaN NaN 217079.8 NaN 10966 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14020 62.166 NaN 881810 35 0 89104 0.261 -1 MSFYMSITF 9 96 571.7501660012792 1141.4857790693584 2 571.7701416015625 MULTI HCD FTMS 0 0 0 14017 46008.4140625 0.23763334167265215 16 -0.43309783935546875 3 Oxidation (M) _M(Oxidation (M))SFYMSITF_ ENST00000318493.10_1_7:116339298-116339358:+|nuORF 21.74664581756881 0.17247014374749275 1 MC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L} 8 -1 50.073 0 0 4.3867 0 0 0 162.05588709049064 162.05588709049064 16.93852093626802 0 0 0 0 0.4247425010840047 0 1.0356668758921828 0 MC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L} 4.3867 - 1081 + NaN NaN 219898.5 NaN 10967 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14021 62.17 NaN 695790 35 0 40450 0.261 + 29803 VELIIFLNCF 10 87 605.8290449258176 NaN 0 605.8453369140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VELIIFLNCF_ ENSG00000111331|ENST00000228928|OAS3 32.30548876998284 0.18095516228401948 1 {I|L}{I|L}{I|L}DWD 6 7 42.925 0 0 3.5485 0 0 228.078082824736 223.1455477350219 451.2236305597579 0 0 0 0 0 0 0 1.2658715643802767 0 {I|L}{I|L}{I|L}DWD 3.5485 - 453 + NaN NaN 190855.3 NaN 10968 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14022 62.173 NaN 1166600 35 0 339420 0.264 + 24006 RWFDKSFTF 9 80 411.8729860415971 1232.5971287249913 3 411.8731384277344 MULTI HCD FTMS 0 0 0 14017 229041.375 0.7272316312426885 1 -0.03610992431640625 5 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 72.96794272382148 0.008127836904478181 1 D{M(Oxidation (M))|F}[Q{I|L}]T{M(Oxidation (M))|F} 6 6 36.872 0 0 2.9914 0 0 463.24119765449376 0 463.24119765449376 0 12.179250024847263 0 0 0 0.9247425010840047 0 0.8494850021680094 0 D{M(Oxidation (M))|F}[Q{I|L}]T{M(Oxidation (M))|F} 2.9914 - 306 NaN NaN 253276.9 NaN 10969 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14023 62.176 NaN 368540 35 0 15823 0.261 + 8003 GFLYDSSYTL 10 77 583.2742064420759 1164.5338599509516 2 583.2738647460938 MULTI HCD FTMS 0 0 0 14017 137037.484375 0.04399703739335242 28 -0.7699432373046875 6 Unmodified _GFLYDSSYTL_ REV__GPR156|p.A102D|1|0.09|ENSG00000175697|chr3:120193353-120193353|G/T|missense_variant 13.90604991867851 0.3810395177745597 1 {I|L}SEY{M(Oxidation (M))|F}KT{I|L} 8 -1 54.022 0 0 4.6389 0 0 165.01397199007016 0 165.01397199007016 0 34.72988165616712 0 0 0 1.9604093769761874 0 0.5796896906561032 0 {I|L}SEY{M(Oxidation (M))|F}KT{I|L} 4.6389 - 430 + NaN NaN 153266.6 NaN 10970 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14024 62.18 NaN 1675700 35 0 240990 0.261 + 5148 FFDAELSQM 9 94 552.2393276201218 1102.4641023070435 2 552.2396240234375 MULTI HCD FTMS 0 0 0 14017 193214.046875 0.030432275724566662 -6 0.15382766723632812 7 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 85.305 0 0 7.7377 7.7377 91.033 0 0 0 1.6812123800902157 68.64414136323865 1.6812123800902157 9.208187539523749 0 2.5189301784845295 0 1.5044321917401078 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}TN{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAES{I|L}Q{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}TGG{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAES{I|L}[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DATD{I|L}Q{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DATD{I|L}[AG]{M(Oxidation (M))|F} 7.7377;6.9025;6.2613;6.1324;5.4261;5.2971;4.83;4.4963;3.9948;3.661 +;-;-;-;-;-;-;-;-;- + 2583 NaN NaN 338333.7 NaN 10971 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14025 62.183 NaN 400220 35 0 20258 0.261 + 7104 FRLSYETF 8 80 531.7642181589331 1061.513883384666 2 532.2824096679688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _FRLSYETF_ REV__ENSG00000187323|ENST00000442544|DCC 14.581692164780916 0.48650662947107914 1 VA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 6 -1 43.14 0 0 4.064 0 0 349.2025405475326 0 349.2025405475326 0 16.23855442125601 0 0 0 0 0 0.6139829889124311 0 VA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 4.064 - 854 + NaN NaN 136029.6 NaN 10972 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14026 62.186 NaN 323520 35 0 33095 0.261 + 2843 DYLKRFYLY 9 63 640.8376333246131 1279.660713716026 2 640.8373413085938 MULTI HCD FTMS 0 0 0 14017 102356.8515625 0.3307672029189423 -2 0.049060821533203125 9 Unmodified _DYLKRFYLY_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 43.77239144664712 0.04802738721622131 1 DY{I|L} 3 6 50.445 0 0 3.9421 0 0 0 885.4626756714205 885.4626756714205 -2.1708468912152767 0 -2.1708468912152767 0 0 0.4247425010840047 2 0 0 + DY{I|L} 3.9421 + + 227 + NaN NaN 134717.4 NaN 10973 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14027 62.19 NaN 137990 35 0 12921 0.261 + 19510 NRKEEPGQSSM 11 53 631.7937039303056 1261.572854927411 2 631.7944946289062 MULTI HCD FTMS 0 0 0 14017 64731.2578125 0.13315591962330647 16 -0.43309783935546875 10 Unmodified _NRKEEPGQSSM_ REV__ENST00000609682.1_1_3:101396927-101397152:+|nuORF 10.150570793230772 0.3686401556411756 1 SQ{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 22.664 0 0 1.7965 0 0 810.4019642560562 0 810.4019642560562 0 15.216525140920607 0 0 0 0.7742275032520141 0 0.3494850021680094 0 SQ{[MS]|[{M(Oxidation (M))|F}A]} 1.7965 - 27 NaN NaN 117652.9 NaN 10974 3051 14017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14029 62.194 NaN 6884600 35 0 911770 0.327 + 2892 DYSPYFKTI 9 116 567.2793386389775 1132.544124344755 2 567.2796020507812 MULTI HCD FTMS 0 0 0 14028 6475460 0.036751959208507004 29 -0.7892570495605469 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 115.59 0 0 10.206 10.206 89.488 0 0 0 0.9640156839957825 0.9640156839957825 0.9640156839957825 0.9640156839957825 0 2.7302046884880937 2 2.5713337517843655 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}KT{I|L} 10.206;10.121;9.1198;8.2819;7.8618;7.1957;5.9578;5.9578;5.9377;5.0299 +;+;-;-;-;-;-;-;-;- + 4927 NaN NaN 756348.8 NaN 10975 3052 14028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14030 62.199 NaN 1832700 35 0 226510 0.261 + 24132 RYAVVLNATW 10 112 596.8276653534533 1191.6407777737065 2 596.8276977539062 MULTI HCD FTMS 0 0 0 14028 852314.625 0.8047751486148129 2 -0.049015045166015625 2 Unmodified _RYAVVLNATW_ ENSG00000099194|ENST00000370355|SCD 114.18643581695662 4.601856720657053E-05 1 TA{I|L}V{I|L}NATW 9 3 95.928 0 0 8.0501 0 0 204.09050590060082 0 204.09050590060082 0 76.90904348617437 0 0 0 1 0 2.385151878060192 1.0752574989159953 TA{I|L}V{I|L}NATW 8.0501 - 2957 + NaN NaN 368158.3 NaN 10976 3052 14028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14031 62.203 NaN 1068000 35 0 259220 0.261 + 23396 RLFGTTVTF 9 82 521.2898597669574 1040.5651666007147 2 521.2899780273438 MULTI HCD FTMS 0 0 0 14028 213654.328125 0.7549254442307476 -1 0.03610992431640625 3 Unmodified _RLFGTTVTF_ ENSG00000071553|ENST00000369762|ATP6AP1 89.40071534611396 0.0045416704840156395 1 [YV]{I|L}KDRT{M(Oxidation (M))|F} 8 7 + 74.06 0 0 7.1173 7.1173 91.639 0 0 0 4.978368397046864 57.86230460946402 4.978368397046864 12.39094983007871 0 1.305462187404089 1.5228787452803376 0.805462187404089 0 [YV]{I|L}KDRT{M(Oxidation (M))|F};[R{I|L}]{M(Oxidation (M))|F}{[SA]|[TG]}TVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V{[QV]|[N{I|L}]|[RA]|[KV]}TVT{M(Oxidation (M))|F};[R{I|L}]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}GVT{M(Oxidation (M))|F};[YV]{[HG]|PP}[{I|L}P]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 7.1173;5.9265;5.2328;4.194;1.1412 -;+;-;-;- + 680 NaN NaN 243310.6 NaN 10977 3052 14028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14032 62.206 NaN 677210 35 0 41928 0.261 + 30807 VPVKDSWLL 9 100 528.8080160637394 1055.6014791942787 2 528.8078002929688 MULTI HCD FTMS 0 0 0 14028 150416.3125 0.49609611974276874 -4 0.10802459716796875 4 Unmodified _VPVKDSWLL_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 36.506200033944 0.08138327636155518 1 VPV 3 6 38.544 0 0 3.6514 0 0 0 757.387894301551 757.387894301551 13.138181262758266 0 0 0 0 0.6861818737241735 1.3979400086720375 0 0 + VPV 3.6514 + + 841 + NaN NaN 191729.1 NaN 10978 3052 14028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14033 62.209 NaN 394770 35 0 80468 0.262 + 16875 LYFDRKYLF 9 54 422.22896925408315 1263.6650783624495 3 422.5635070800781 MULTI HCD FTMS 0 0 0 14028 70630.3359375 0.7707555655814413 -1 0.03610992431640625 5 Unmodified _LYFDRKYLF_ ENSG00000186417|ENST00000335449|GLDN;nc|ENSG00000186417|Q6ZMI3-2|GLDN 14.838274106304384 0.23215694253501695 1 {I|L}Y 2 7 45.217 0 0 3.5782 0 0 0 984.4945637192457 984.4945637192457 22.769250191953674 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.5782 + + 15 + NaN NaN 157022.9 NaN 10979 3052 14028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14035 62.214 NaN 1861300 35 0 400510 0.327 + 4265 EVILIDPFHK 10 58 404.23236799717034 1209.675274591711 3 404.2325744628906 MULTI HCD FTMS 0 0 0 14034 586124.4375 0.43824030227674887 6 -0.16263961791992188 1 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 46.4752305370441 0.09060834033530853 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D[HK]P{M(Oxidation (M))|F} 10 4 + 58.752 0 0 4.8568 4.8568 91.093 0 0 0 39.82402579306971 1.5477943320234289 1.5477943320234289 58.75192609659102 0 1.4361818737241734 1.0969100130080565 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D[HK]P{M(Oxidation (M))|F} 4.8568 - 218 + NaN NaN 363855.7 NaN 10980 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14036 62.218 NaN 680460 35 0 56932 0.261 + 13305 KYMDVQFDF 9 86 604.7680796891424 1207.5216064450847 2 604.7683715820312 MULTI HCD FTMS 0 0 0 14034 346976.125 0.06553533159334814 65 -1.7464637756347656 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 61.60191391372663 0.015340508911304802 1 TAYPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 5 62.438 0 0 5.1707 0 0 220.08459670234532 0 220.08459670234532 0 47.11015528703888 0 0 0 1 0 0.7971062485323517 0.28872548999643577 TAYPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.1707 - 3765 NaN NaN 193328.5 NaN 10981 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14037 62.222 NaN 710780 35 0 66246 0.261 + 11036 IYFEYSHAF 9 99 588.77144573732 1175.52833854144 2 588.7554321289062 MULTI HCD FTMS 0 0 0 14034 44819.70703125 0.1786371411842236 -4 0.10470962524414062 3 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 92.8221339359638 0.0044520161739443126 1 {I|L}Y{M(Oxidation (M))|F}EYSHA{M(Oxidation (M))|F} 9 0 + 65.908 0 0 5.6067 5.6067 91.964 0 0 0 27.585076950613164 12.351905544230348 12.351905544230348 46.62149931569481 0 1.6571406706489746 1.6989700043360187 0.28872548999643577 0 + + {I|L}Y{M(Oxidation (M))|F}EYSHA{M(Oxidation (M))|F};M{I|L}SEY{[CA]|SS}{[NV]|[RG]}{M(Oxidation (M))|F};{I|L}MSEY{[CA]|SS}{[NV]|[RG]}{M(Oxidation (M))|F};[HV][C(Carbamidomethyl (C))R]YSHA{M(Oxidation (M))|F};[HV]HSY[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F} 5.6067;1.6407;1.0928;0.90447;0.17199 +;-;-;-;- + 923 + NaN NaN 201827.5 NaN 10982 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14038 62.225 NaN 1137800 35 0 193420 0.264 + 2854 DYLYFRKLY 9 96 427.56040154912273 1279.6593752475683 3 427.5605773925781 MULTI HCD FTMS 0 0 0 14034 247620.4375 0.8593315374954276 -2 0.0556488037109375 4 Unmodified _DYLYFRKLY_ REV__ENSG00000137673|ENST00000260227|MMP7;REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF;REV__ENST00000533366.5_1_11:102395628-102401431:-|nuORF 36.12702656103203 0.08312389501731911 1 DP{M(Oxidation (M))|F}KT[YV]{I|L}Y 9 -1 37.894 0 0 2.9613 0 0 135.06843764472814 0 135.06843764472814 0 19.935304931145964 0 0 0 0.8252574989159953 0 0.9876954943324545 0 DP{M(Oxidation (M))|F}KT[YV]{I|L}Y 2.9613 - 219 NaN NaN 251721.2 NaN 10983 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14039 62.229 NaN 449040 35 0 68583 0.261 + -1 YDQQYNLLMI 10 60 439.54606484283323 NaN 0 439.5337219238281 PEAK HCD FTMS 0 0 0 14034 9258.1494140625 0.9329540442381261 -2 0.0556488037109375 5 Oxidation (M) _YDQQYNLLM(Oxidation (M))I_ REV__ENSG00000070214|ENST00000374720|SLC44A1;REV__nc|ENSG00000070214|Q8WWI5-2|SLC44A1;REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 8.444304893310646 0.3329571343918231 1 PDD 3 -1 19.922 0 0 2.2714 0 0 414.9027243128165 132.0454500787719 546.9481743915884 0 0 0 0 0 0 0 0.7614393726401688 0 PDD 2.2714 - 25 + NaN NaN 156013.1 NaN 10984 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14040 62.232 NaN 191880 35 0 44777 0.261 -1 RMCLSRRFIMA 11 57 467.2420011621631 1398.7041740866894 3 467.242431640625 MULTI HCD FTMS 0 0 0 14034 67911.6171875 0.7809720051030492 1 -0.029476165771484375 6 Oxidation (M) _RMCLSRRFIM(Oxidation (M))A_ ENST00000547505.2_1_12:44054435-44054633:+|nuORF 2.6312355333042263 0.4073809613003177 1 K 1 -1 5.7969 0 0 0.41445 0 0 1051.5558109048518 216.02926050357658 1267.5850714084283 0 0 0 0 0 0.3807196863200844 0 0 0 K 0.41445 - 21 + NaN NaN 120807.5 NaN 10985 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14041 62.235 NaN 203460 35 0 42040 0.261 + 28848 TVISEDAVL 9 60 473.7582653298913 945.5019777265826 2 473.7582092285156 MULTI HCD FTMS 0 0 0 14034 140894.359375 1 0 0 7 Unmodified _TVISEDAVL_ ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant 43.85829265575387 0.04763305254408404 1 VT{I|L}CR 5 8 48.505 0 0 5.1301 0 0 0 370.15268884830317 370.15268884830317 23.728721920568248 0 0 0 0 0.9604093769761877 1.5228787452803376 0 0 VT{I|L}CR 5.1301 - 91 + NaN NaN 131337.1 NaN 10986 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14042 62.239 NaN 247380 35 0 26787 0.261 + 25765 SLEEIEHL 8 70 485.2500685361721 NaN 0 485.23931884765625 PEAK HCD FTMS 0 0 0 14034 10432.607421875 1 0 0 8 Unmodified _SLEEIEHL_ ENST00000407916.2_1_7:55002433-55002823:+|nuORF 9.347437153973935 0.38822285293237185 1 D{I|L} 2 7 7.0783 0 0 0.73087 0 0 472.22036915066604 265.1311129205688 737.3514820712348 0 0 0 0 0 0 0 0 0 D{I|L} 0.73087 - 30 + NaN NaN 134399.2 NaN 10987 3053 14034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14044 62.244 NaN 1882500 35 0 238350 0.327 + 14636 LGAISGYRTTW 11 116 612.8220928891878 1223.6296328451756 2 612.8062744140625 MULTI HCD FTMS 0 0 0 14043 157760.6875 0.6316243971166948 4 -0.11360549926757812 1 Unmodified _LGAISGYRTTW_ REV__ENSG00000106290|ENST00000453269|TAF6;REV__ENST00000487115.1_1_7:99707771-99708935:-|nuORF;REV__nc|ENSG00000106290|P49848-2|TAF6;REV__nc|ENSG00000106290|P49848-3|TAF6;REV__nc|ENSG00000106290|P49848-4|TAF6 14.405379775768559 0.3315678654765638 1 [Y{I|L}]S{[SA]|[TG]}NPQSY 10 -1 65.154 0 0 5.3247 0 0 0 110.08954927476285 110.08954927476285 29.139107048501486 0 0 0 0 0.3494850021680094 2 2.0055233930907206 0 [Y{I|L}]S{[SA]|[TG]}NPQSY 5.3247 - 6893 NaN NaN 372082.3 NaN 10988 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14045 62.248 NaN 969500 35 0 229520 0.264 + 35700 YYLDWIHHY 9 75 437.2046514456232 1308.5921249370697 3 437.2048645019531 MULTI HCD FTMS 0 0 0 14043 393921.1875 0.7922069401106723 2 -0.05902862548828125 2 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 51.629811660486645 0.02929079705179888 1 YY{I|L}DW{I|L}HHY 9 0 + 102.36 0 0 7.8223 7.8223 96.501 0 0 0 91.77153377858993 14.09256854528806 14.09256854528806 71.67017533604145 0 1.7302046884880937 2 0.4247425010840047 0 + + YY{I|L}DW{I|L}HHY;YYR[YR]YYY 7.8223;2.3454 +;- + 377 + NaN NaN 235700.5 NaN 10989 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14046 62.252 NaN 435130 35 0 33895 0.261 + 6024 FPDRIMNTF 9 69 570.7786329085807 1139.5427128839613 2 570.778564453125 MULTI HCD FTMS 0 0 0 14043 254819.78125 0.7464604331891689 -3 0.08512496948242188 3 Unmodified _FPDRIMNTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 139.78183599554657 1.962818552322152E-05 1 {M(Oxidation (M))|F}PDR{I|L}MNT{M(Oxidation (M))|F} 9 0 + 96.684 0 0 8.4845 8.4845 90.099 0 0 0 69.82570335676726 16.478174818886373 16.478174818886373 6.052659518797938 0 2.9291746928241125 0 2.1307196863200843 1.0044321917401078 + + {M(Oxidation (M))|F}PDR{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}MGGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRP{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}MGGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPN{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRP{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPGG{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPNT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{[QS]|[NT]}M{M(Oxidation (M))|F} 8.4845;7.9533;7.3697;7.1569;7.1453;6.52;6.3489;5.712;5.1825;4.7335 +;+;-;-;-;-;-;-;-;- + 983 + NaN NaN 150211.4 NaN 10990 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14047 62.255 NaN 398210 35 0 77259 0.261 -1 TMNQKTFFRFF 11 63 494.9113945502776 1481.7123542510328 3 495.24615478515625 MULTI HCD FTMS 0 0 0 14043 70009.859375 0.9159355035085815 1 -0.026226043701171875 4 Oxidation (M) _TM(Oxidation (M))NQKTFFRFF_ ENST00000552189.5_1_12:48437042-48437348:-|nuORF 4.11662792887243 0.40086653484894175 1 {M(Oxidation (M))|F}[K{I|L}]{[C(Carbamidomethyl (C))G]|[NC]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 37.223 0 0 2.5122 0 0 564.2659519878792 0 564.2659519878792 0 27.759169494624132 0 0 0 2 0 0 0.4247425010840047 {M(Oxidation (M))|F}[K{I|L}]{[C(Carbamidomethyl (C))G]|[NC]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5122 - 46 NaN NaN 142139.1 NaN 10991 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14048 62.258 NaN 185140 35 0 14671 0.261 + 20461 PARHWETRFG 10 48 628.8168058407923 1255.6190587483845 2 629.3186645507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PARHWETRFG_ nc|ENSG00000203797|Q99489-3|DDO;nc|ENSG00000203797|Q99489-4|DDO 3.2813086475875832 0.45793521633868084 1 W 1 9 6.4659 0 0 0.51496 0 0 647.3221359962346 419.19269739322505 1066.5148333894597 0 0 0 0 0 0.4247425010840047 0 0 0 + W 0.51496 + + 17 + NaN NaN 119305 NaN 10992 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14049 62.262 NaN 206670 35 0 17221 0.261 -1 AYMGLYKYF 9 61 586.2770694823818 1170.5395860315634 2 586.278076171875 MULTI HCD FTMS 0 0 0 14043 25852.826171875 0.7258514299276136 1 -0.026226043701171875 6 Oxidation (M) _AYM(Oxidation (M))GLYKYF_ ENSG00000164615|ENST00000297156|CAMLG 39.957323273324995 0.06554068735427583 1 NPKY{M(Oxidation (M))|F} 5 -1 41.454 0 0 3.5414 0 0 503.2365895001969 0 503.2365895001969 0 25.880456295278407 0 0 0 1 0 0 0 NPKY{M(Oxidation (M))|F} 3.5414 - 94 NaN NaN 115391.4 NaN 10993 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14050 62.265 NaN 123750 35 0 18369 0.262 + -1 CSIMFLPI 8 46 490.750556054329 979.4865591754581 2 490.7508239746094 MULTI HCD FTMS 0 0 0 14043 14844.0927734375 0.04872561544416579 22 -0.6129608154296875 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))SIMFLPI_ REV__ENSG00000197938|ENST00000355273|OR5H2 9.347437153973935 0.5250182646323369 1 W 1 -1 1.1092 0 0 0.11325 0 0 507.27774067135493 283.1048678033813 790.3826084747362 0 0 0 0 0 0 0 0 0 W 0.11325 - 20 + NaN NaN 99968.2 NaN 10994 3054 14043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14052 62.27 NaN 833230 35 0 197020 0.327 + 11864 KFDDGAVFL 9 75 506.26094660106827 1010.5073402689366 2 506.2609558105469 MULTI HCD FTMS 0 0 0 14051 425447.53125 0.6951649846902892 2 -0.05895233154296875 1 Unmodified _KFDDGAVFL_ ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A 31.26834338654808 0.10542797264966089 1 [{M(Oxidation (M))|F}V]{[DA]|[EG]}[NS]V{M(Oxidation (M))|F}{I|L} 9 4 + 43.579 0 0 4.3126 4.3126 81.008 0 0 0 7.381062318217104 18.507112333562855 7.381062318217104 1.549471895720984 0 1 1.3979400086720375 0.4247425010840047 0 [{M(Oxidation (M))|F}V]{[DA]|[EG]}[NS]V{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]NG{[ES]|[DT]|[{I|L}C]}V{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]{[DA]|[EG]}[DG]K{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]K[{M(Oxidation (M))|F}E]DN{I|L};[{M(Oxidation (M))|F}V]{[DA]|[EG]}[DG]{M(Oxidation (M))|F}K{I|L};[{M(Oxidation (M))|F}V]K[{M(Oxidation (M))|F}E]DGG{I|L};[{M(Oxidation (M))|F}V]{[DA]|[EG]}[DG]{M(Oxidation (M))|F}{I|L}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[{M(Oxidation (M))|F}E]DN{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[{M(Oxidation (M))|F}E]DGG{I|L} 4.3126;4.1592;3.5199;2.7778;2.5529;1.8612;1.6604;1.3187;0.40212 -;-;-;-;-;-;-;-;- 275 NaN NaN 208414.5 NaN 10995 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14053 62.274 NaN 710600 35 0 189160 0.261 + 20799 PHGIRCNMIL 10 74 577.303364068702 1152.5921752042038 2 577.78662109375 MULTI HCD FTMS 0 0 0 14051 27786.0546875 0.3879570633281658 8 -0.21158599853515625 2 Unmodified _PHGIRCNMIL_ REV__ENSG00000083457|ENST00000263087|ITGAE 7.289230182591677 0.43672065049472153 1 N[WP]Q 4 -1 15.974 0 0 1.3859 0 0 130.1289820048749 494.2110994928344 624.3400814977093 0 0 0 0 0 0.8494850021680094 0 0 0.7302046884880937 N[WP]Q 1.3859 - 62 + NaN NaN 187388 NaN 10996 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14054 62.278 NaN 181720 35 0 14257 0.261 + 24004 RWFDKSFTF 9 54 617.3059297494793 1232.5973065657586 2 617.3060913085938 MULTI HCD FTMS 0 0 0 14051 164983.6875 0.5377852364375336 4 -0.10693740844726562 3 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 23.789781309258295 0.1548179064208189 1 {M(Oxidation (M))|F}SKD[Q{I|L}]TE 8 7 24.799 0 0 2.0119 0 0 266.1257358920706 0 266.1257358920706 0 13.829628067253168 0 0 0 1.110924374808178 0 0 0.3054621874040891 {M(Oxidation (M))|F}SKD[Q{I|L}]TE 2.0119 - 70 + NaN NaN 109433.4 NaN 10997 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14055 62.281 NaN 317990 35 0 42488 0.261 -1 HPNYLGDLIM 10 61 594.790109244699 1187.565665556198 2 594.7900390625 MULTI HCD FTMS 0 0 0 14051 144011.328125 0.9050599437210121 4 -0.10693740844726562 4 Oxidation (M) _HPNYLGDLIM(Oxidation (M))_ ENSG00000143815|ENST00000272163|LBR;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENST00000530650.5_1_11:64879967-64883522:+|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2 26.268140514670165 0.2654086933305545 1 [YN][YE]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}{M(Oxidation (M))|F} 9 -1 + 37.303 0 0 3.1411 3.1411 86.747 0 0 0 4.995456044618798 12.240918700215893 4.995456044618798 17.65916793966632 0 0.8494850021680094 1.6989700043360187 0.4247425010840047 0 [YN][YE]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]{[RE]|[WV]}{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]{I|L}[DG]{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]{I|L}{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 3.1411;1.6541;1.5489;1.1063 -;-;+;- + 57 NaN NaN 127907.7 NaN 10998 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14056 62.284 NaN 136650 35 0 10506 0.261 + -1 LVCVDMWAWL 10 58 626.2965162846485 NaN 0 626.3096313476562 PEAK HCD FTMS 0 0 0 14051 10348.5771484375 0.6182964333375187 -1 0.026226043701171875 5 Oxidation (M) _LVCVDM(Oxidation (M))WAWL_ REV__chr5:128369334-128374628|354|18.19|0.91|4.33|-|0|FBN2,FBN2|1 3.944395688203298 0.33680843299986807 1 E 1 -1 5.4846 0 0 0.43856 0 0 393.11114672769696 725.4013129276664 1118.5124596553633 0 0 0 0 0 0 0 0 0 E 0.43856 - 22 + NaN NaN 116912.1 NaN 10999 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14057 62.288 NaN 142180 35 0 10801 0.264 -1 YYYNKQREC 9 55 441.86450128822344 1322.5716744648703 3 441.8643798828125 MULTI HCD FTMS 0 0 0 14051 49073.78515625 0.7609974891646399 2 -0.05895233154296875 6 Carbamidomethyl (C) _YYYNKQREC(Carbamidomethyl (C))_ ENSG00000197889|ENST00000407572|MEIG1 4.189502756095605 0.319257502753388 1 YY 2 -1 42.717 0 0 3.2298 0 0 0 993.4218873522105 993.4218873522105 35.72682509756042 0 0 0 0 0.3252574989159953 2 0 0 YY 3.2298 + + 41 + NaN NaN 117544 NaN 11000 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14058 62.291 NaN 516560 35 0 136610 0.261 + 16714 LYAEYVSKEF 10 62 416.87676888716965 1247.608477261709 3 416.8769836425781 MULTI HCD FTMS 0 0 0 14051 66206.4375 0.46378158676731074 -1 0.026226043701171875 7 Unmodified _LYAEYVSKEF_ REV__PCDH7|p.D316Y|1|0.17|ENSG00000169851|chr4:30722368-30722368|G/T|missense_variant 6.1918466704503565 0.44252927588099017 1 [Y{I|L}]QSE 5 -1 21.427 0 0 1.7174 0 0 0 624.3217700686026 624.3217700686026 4.436974992327123 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]QSE 1.7174 - 32 NaN NaN 168577.9 NaN 11001 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14059 62.294 NaN 131320 35 0 26350 0.261 + -1 EHSFLIFLHC 10 42 434.88228830034404 NaN 0 434.8821716308594 PEAK HCD FTMS 0 0 0 14051 46422.5625 0.49704570845614304 -11 0.2845497131347656 8 Carbamidomethyl (C) _EHSFLIFLHC(Carbamidomethyl (C))_ REV__ENST00000480594.1_1_2:65243695-65245227:+|nuORF 0.776531954647913 0.3395196853010637 1 V 1 -1 4.6041 0 0 0.53058 0 0 131.2514407590881 634.4068087213499 765.6582494804379 0 0 0 0 0 0 0 0 0 V 0.53058 - 1 + NaN NaN 115074.3 NaN 11002 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14060 62.298 NaN 492260 35 0 104360 0.261 + 3225 EDLIAYLK 8 61 482.7711603734485 963.527767813697 2 482.7711486816406 MULTI HCD FTMS 0 0 0 14051 78830.5 0.20490864274147724 -6 0.16041183471679688 9 Unmodified _EDLIAYLK_ CON__P62894 15.847184025352803 0.47719562709667024 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY[K{I|L}] 8 0 + 33.633 0 0 3.4906 3.4906 88.37 0 0 0 11.694699959806982 6.9897000433601875 6.9897000433601875 33.63290021996811 0 0.4247425010840047 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY[K{I|L}] 3.4906 + + 73 + NaN NaN 164327.5 NaN 11003 3055 14051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14062 62.303 NaN 1349800 35 0 108600 0.327 + 27069 SYMGHFDLL 9 113 549.7497688734081 1097.4849848136162 2 549.7505493164062 MULTI HCD FTMS 0 0 0 14061 595638.875 0.05750389110655521 70 -1.8772048950195312 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 1 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L} 9 2 + 50.077 0 0 4.5629 4.5629 90.015 0 0 0 1.299290122852426 5.652209333178611 1.299290122852426 42.43980478910716 0 1.5484550065040281 2 0.7302046884880937 0 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};S[QP]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}QE{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[DS]|[MA]|[CV]|TT}WE[KA]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[DS]|[MA]|[CV]|TT}WE[QA]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[DS]|[MA]|[CV]|TT}WAKE{I|L};[{M(Oxidation (M))|F}E]EW{M(Oxidation (M))|F}AA[KA] 4.5629;0.69587;0.42068;0.42068;0.33366;0.055811 -;-;-;-;-;- 1892 + NaN NaN 290054.6 NaN 11004 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14063 62.307 NaN 397210 35 0 75754 0.263 -1 VNMHIKEEKF 10 47 430.88812362177003 NaN 0 430.88812255859375 PEAK HCD FTMS 0 0 0 14061 126228.7578125 0.3448289911004636 26 -0.7138824462890625 2 Oxidation (M) _VNM(Oxidation (M))HIKEEKF_ ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000244474|P22310-2|UGT1A4 3.5870582119611467 0.3371142643538189 1 W 1 -1 5.4846 0 0 0.63792 0 0 122.37301655237839 548.2843721979124 670.6573887502908 0 0 0 0 0 0 0 0 0 W 0.63792 - 3 + NaN NaN 152238.3 NaN 11005 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14064 62.311 NaN 301520 35 0 46896 0.261 + 17988 MLDAIIENL 9 63 516.2757261347979 1030.5368993363957 2 516.2761840820312 MULTI HCD FTMS 0 0 0 14061 146986.140625 0.6668147908192325 4 -0.10701751708984375 3 Unmodified _MLDAIIENL_ REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant 11.640296217721598 0.25978676193971967 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 -1 24.181 0 0 2.3465 0 0 0 668.36606738743 668.36606738743 4.7172622283295595 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 2.3465 + + 69 NaN NaN 144307.2 NaN 11006 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14065 62.314 NaN 495050 35 0 174670 0.261 -1 IPCEGECC 8 50 455.6604335598094 NaN 0 455.660400390625 PEAK HCD FTMS 0 0 0 14061 137439.6875 0.7821381552681359 -4 0.10804367065429688 4 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))EGECC_ ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3 0.7936320650641473 0.38822285293237185 1 Y 1 -1 2.4743 0 0 0.2721 0 0 310.0285564733313 433.18573938541255 743.2142958587439 0 0 0 0 0 0 0 0 0 Y 0.2721 - 4 + NaN NaN 177455.3 NaN 11007 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14066 62.317 NaN 242770 35 0 20356 0.261 + 27461 SYVVAMETF 9 58 531.7441522578185 1061.473751582437 2 531.743896484375 MULTI HCD FTMS 0 0 0 14061 116958.546875 0.9672519939036874 -5 0.14415359497070312 5 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 107.99703571036002 0.003269392969029945 1 {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]}V + + 65.438 14.265 4.0854 6.1648 6.1648 63.55 0 0 0 0 49.599009323677095 0 0 0 1.9247425010840047 0 0.9559771852360797 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 6.1648 + + 527 + NaN NaN 135736.3 NaN 11008 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14067 62.321 NaN 256110 35 0 23902 0.261 + 35780 YYMKDLPTSF 10 64 632.7989793098772 1263.5834056865542 2 632.79931640625 MULTI HCD FTMS 0 0 0 14061 126129.7421875 1 0 0 6 Unmodified _YYMKDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 61.08992128646608 0.03745793995309655 1 YYM{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}PTS{M(Oxidation (M))|F} 10 0 + 64.9 0 0 5.1362 5.1362 85.133 0 0 0 5.841218823962109 5.841218823962109 5.841218823962109 7.984550065040281 0 2.274227503252014 2 0.4247425010840047 0.3807196863200844 + + YYM{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}PTS{M(Oxidation (M))|F};YYM{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[{M(Oxidation (M))|F}V]W;YY{[TV]|[{I|L}S]}{[WT]|[RM]}PTS{M(Oxidation (M))|F};YY[KP]{[{M(Oxidation (M))|F}D]|MM}PTS{M(Oxidation (M))|F};YYM{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[RE]|[WV]}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}V]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}MG[HN];{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}V]{I|L}{[{M(Oxidation (M))|F}C]|[YS]}PTS{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}Q{[HG]|PP}{[WT]|[RM]}PTS{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PTS{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}QA[C(Carbamidomethyl (C))H]{I|L}{[RE]|[WV]}{M(Oxidation (M))|F} 5.1362;4.5043;3.834;3.7714;3.6668;2.6368;2.5369;2.2557;2.2537;2.0639 +;-;-;-;-;-;-;-;-;- + 320 NaN NaN 119419.9 NaN 11009 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14068 62.324 NaN 183610 35 0 17142 0.261 + 6250 FPEYTHQLF 9 59 591.2848513486426 1180.5551497640852 2 591.2847290039062 MULTI HCD FTMS 0 0 0 14061 27859.3671875 0.22538733006827102 19 -0.5177192687988281 7 Unmodified _FPEYTHQLF_ ENSG00000128708|ENST00000264108|HAT1 5.731851221503515 0.3075653528928475 1 {I|L}E{I|L}MQN 6 7 36.375 0 0 3.0812 0 0 434.2028065412125 0 434.2028065412125 0 20.80198135264581 0 0 0 0 0 0 0 {I|L}E{I|L}MQN 3.0812 - 96 NaN NaN 111468.3 NaN 11010 3056 14061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14070 62.329 NaN 10872000 35 0 1695200 0.327 + 5149 FFDAELSQM 9 105 552.2393276201218 1102.4641023070435 2 552.2399291992188 MULTI HCD FTMS 0 0 0 14069 6348984.5 1 0 0 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.548 3.7236 1.266 8.9388 8.9388 68.216 0 0 0 0 48.26827915468907 0 0 0 3.2302046884880937 0 1.7416440611282624 0.9143943297944485 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9388 + + 5447 + NaN NaN 826109.7 NaN 11011 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14071 62.333 NaN 6508500 35 0 823180 0.2 + 2893 DYSPYFKTI 9 118 567.2793386389775 1132.544124344755 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14069 4345276.5 0.024661942885553165 34 -0.8788223266601562 2 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 115.25 0 0 10.177 10.177 90.086 0 0 0 2.2317268792385363 2.2317268792385363 2.2317268792385363 2.2317268792385363 0 2.7302046884880937 2 2.537860356969059 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};DY{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]{M(Oxidation (M))|F}K;DYS[K{I|L}]TPY{M(Oxidation (M))|F} 10.177;9.9795;9.105;8.2672;7.7771;7.1957;6.7297;5.8678;5.8327;5.0394 +;+;-;-;-;-;-;-;-;- + 3725 NaN NaN 671315.4 NaN 11012 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14072 62.336 NaN 1276100 35 0 297390 0.261 + -1 FFSFCTMW 8 93 563.2306075460008 1124.4466621588015 2 563.2307739257812 MULTI HCD FTMS 0 0 0 14069 780840.5625 0.8823408021095754 1 -0.0284271240234375 3 Carbamidomethyl (C) _FFSFC(Carbamidomethyl (C))TMW_ REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|125|2|anti-sense 20.871210003555333 0.44023077629866025 1 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 78.378 0 0 6.9704 0 0 315.08629042793126 0 315.08629042793126 0 42.57592922705584 0 0 0 2.4049471895720984 0 0.9247425010840047 0 S{I|L}EAD{M(Oxidation (M))|F}E 6.9704 - 1523 NaN NaN 280582.3 NaN 11013 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14073 62.339 NaN 856490 35 0 111240 0.261 + 20365 NYTDIKDYL 9 117 572.7797832153976 1143.5450134975952 2 572.77978515625 MULTI HCD FTMS 0 0 0 14069 453180.75 0.86318909729861 1 -0.0284271240234375 4 Unmodified _NYTDIKDYL_ ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 100.7086487251713 0.004245359191255521 1 [YN]TD{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L} 9 0 + 95.999 0 0 8.3948 8.3948 95.697 0 0 0 22.995754372608204 68.17504726708569 22.995754372608204 25.368931070804592 0 2.305462187404089 1.6989700043360187 1.1496498648046138 1.4615005783268 + + [YN]TD{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSD{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};[YQ]SD{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};{[CT]|[{M(Oxidation (M))|F}G]}SSD{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QS]|[NT]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QS]|[NT]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L} 8.3948;6.1764;5.5316;5.517;5.0095;4.8863;4.2433;4.0547;3.6127;3.4241 +;-;-;-;-;-;-;-;-;- + 2917 NaN NaN 213595.6 NaN 11014 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14074 62.342 NaN 726290 35 0 56885 0.261 + 596 APFKFDMEL 9 92 557.268033382246 1112.521513831292 2 557.2679443359375 MULTI HCD FTMS 0 0 0 14069 462233.71875 0.5065788040675135 13 -0.3506317138671875 5 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 121.5340881639634 0.001118397630175091 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 91.512 0 0 8.2256 8.2256 93.088 0 0 0 11.012196779647638 11.012196779647638 11.012196779647638 11.012196779647638 0 3.079689690656103 0 2.166386562212267 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}YQV{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AP{M(Oxidation (M))|F}Y[AG]V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{I|L}MQA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}YQ{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L} 8.2256;7.2358;6.1087;5.9757;5.903;5.7206;5.281;4.6429;4.5728;3.2098 +;+;-;-;-;-;-;-;-;- + 2030 + NaN NaN 209303.2 NaN 11015 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14075 62.346 NaN 262810 35 0 19726 0.261 + 2844 DYLKRFYLY 9 64 640.8376333246131 1279.660713716026 2 640.83740234375 MULTI HCD FTMS 0 0 0 14069 153630.984375 0.4964600826196156 4 -0.1070556640625 6 Unmodified _DYLKRFYLY_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 41.95555342248728 0.056367691549927025 1 DY{I|L}K{[DS]|[MA]|[CV]|TT}N 7 5 60.093 0 0 4.696 0 0 0 441.2206209772094 441.2206209772094 23.90765071402221 0 0 0 0 0.4247425010840047 2 0.3494850021680094 0 DY{I|L}K{[DS]|[MA]|[CV]|TT}N 4.696 - 110 + NaN NaN 120536.7 NaN 11016 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14076 62.349 NaN 462990 35 0 47155 0.261 + 17043 LYKELGEYF 9 82 581.2944882941952 1160.5744236551902 2 581.2950439453125 MULTI HCD FTMS 0 0 0 14069 224122.671875 1 0 0 7 Unmodified _LYKELGEYF_ ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1 59.368380827593164 0.01846506874148156 1 [Y{I|L}]{[SA]|[TG]}V{I|L}GEY{M(Oxidation (M))|F} 10 3 + 76.432 0 0 6.5857 6.5857 92.115 0 0 0 2.3860585694618663 63.33281569033012 2.3860585694618663 20.511525224473814 0 1.8807196863200843 2 0 0 [Y{I|L}]{[SA]|[TG]}V{I|L}GEY{M(Oxidation (M))|F};[Y{I|L}]{[SA]|[TG]}V{[DA]|[EG]}{I|L}Y{M(Oxidation (M))|F};[RH][Y{M(Oxidation (M))|F}][KT]Y{M(Oxidation (M))|F} 6.5857;4.8183;1.5428 -;-;- 315 NaN NaN 154217.3 NaN 11017 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14077 62.352 NaN 302810 35 0 42327 0.261 -1 PYMDSPQSIGF 11 58 629.2764609080789 1256.5383688829577 2 629.2767944335938 MULTI HCD FTMS 0 0 0 14069 99854.6328125 0.5171175577880623 -5 0.13419342041015625 8 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 30.7034409873982 0.19682282685441074 1 S{I|L}G{M(Oxidation (M))|F} 4 -1 45.918 0 0 3.6543 0 0 834.320851652941 0 834.320851652941 0 38.92790030352131 0 0 0 1 0 1 0 S{I|L}G{M(Oxidation (M))|F} 3.6543 + + 35 NaN NaN 133215.9 NaN 11018 3057 14069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14079 62.357 NaN 747990 35 0 67501 0.327 + 13306 KYMDVQFDF 9 90 604.7680796891424 1207.5216064450847 2 604.7685546875 MULTI HCD FTMS 0 0 0 14078 321128.65625 0.060653374843788056 70 -1.8974266052246094 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 65.47368725323818 0.010552856507075443 1 [Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 65.968 0 0 5.4631 5.4631 84.039 0 0 0 2.631288188505671 47.78785393283259 2.631288188505671 4.035532020140657 0 1.8494850021680094 0 0.23965182871044374 0.6694451763165201 [Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG]T[MT]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[MT]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[QT]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG]T[MT]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[MT]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.4631;5.1289;4.7005;4.6156;4.4898;4.2453;3.8734;3.8155;3.3022;3.1765 -;-;-;-;-;-;-;-;-;- 3224 NaN NaN 212791 NaN 11019 3058 14078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14080 62.362 NaN 1050600 35 0 235850 0.264 + 4266 EVILIDPFHK 10 60 404.23236799717034 1209.675274591711 3 404.2326354980469 MULTI HCD FTMS 0 0 0 14078 203902.09375 0.15245587708473934 11 -0.2866973876953125 2 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 8.751783647060863 0.42897912249790143 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 6 4 30.164 0 0 2.4935 0 0 0 524.2621799228235 524.2621799228235 13.965912507003605 0 0 0 0 0.3252574989159953 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 2.4935 + + 80 + NaN NaN 235531.6 NaN 11020 3058 14078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14081 62.365 NaN 746260 35 0 53116 0.261 + 30818 VPVRRWPF 8 104 528.8080160637394 1055.6014791942787 2 528.8084716796875 MULTI HCD FTMS 0 0 0 14078 240543.84375 0.7933505716834127 2 -0.052440643310546875 3 Unmodified _VPVRRWPF_ ENST00000454741.5_1_22:28395954-28396164:+|nuORF 34.18733598223924 0.30560024141787767 1 VPV 3 5 43.645 0 0 4.1346 0 0 0 757.387742937398 757.387742937398 15.219114953917376 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 + VPV 4.1346 + + 906 + NaN NaN 198364.4 NaN 11021 3058 14078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14082 62.368 NaN 649550 35 0 78762 0.261 + 11037 IYFEYSHAF 9 85 588.77144573732 1175.52833854144 2 588.7721557617188 MULTI HCD FTMS 0 0 0 14078 162178.0625 0.6463903351174661 1 -0.019557952880859375 4 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 52.268347100219714 0.028397529699942435 1 {I|L}Y{M(Oxidation (M))|F}EYS 6 3 67.216 0 0 5.718 0 0 0 370.15192590885005 370.15192590885005 33.28722440767503 0 0 0 0 1.5356668758921828 1.6989700043360187 0 0 + {I|L}Y{M(Oxidation (M))|F}EYS 5.718 + + 702 + NaN NaN 192315.9 NaN 11022 3058 14078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14083 62.372 NaN 263500 35 0 45052 0.264 + 17584 LYVVHPYVQF 10 56 422.22896925408315 1263.6650783624495 3 422.2292785644531 MULTI HCD FTMS 0 0 0 14078 62183.703125 0.46614158896287355 2 -0.052440643310546875 5 Unmodified _LYVVHPYVQF_ ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 10.823927491677226 0.4098686510432541 1 {I|L}YY 3 7 50.445 0 0 3.992 0 0 0 821.4107149713499 821.4107149713499 33.455612550363796 0 0 0 0 0.4247425010840047 2 0 0 {I|L}YY 3.992 - 17 + NaN NaN 124488 NaN 11023 3058 14078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14085 62.377 NaN 2211400 35 0 294880 0.327 + -1 IYSICVLLMP 10 110 612.8220928891878 1223.6296328451756 2 612.8062744140625 MULTI HCD FTMS 0 0 0 14084 93177.9921875 0.3730555062393081 8 -0.21480941772460938 1 Carbamidomethyl (C),Oxidation (M) _IYSIC(Carbamidomethyl (C))VLLM(Oxidation (M))P_ REV__ENSG00000171133|ENST00000302681|OR2K2 11.640296217721598 0.4022326134240651 1 YSQTY{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}] 8 -1 56.745 0 0 4.6375 0 0 113.11441556366965 0 113.11441556366965 0 -10.994850021680094 -10.994850021680094 0 0 0 0 1.5356668758921828 0.3252574989159953 YSQTY{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}] 4.6375 - 3669 + NaN NaN 419843.9 NaN 11024 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14086 62.381 NaN 1940400 35 0 256980 0.261 + 20013 NYIGLINRI 9 95 538.3164166178896 1074.618280302579 2 538.316650390625 MULTI HCD FTMS 0 0 0 14084 665376.875 0.10450535592857234 -5 0.1331634521484375 2 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 152.41221235671458 6.276234901293889E-06 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 109.92 0 0 10.229 10.229 93.97 0 0 0 19.541681973056683 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6747425010840047 1.6989700043360187 0 2.361407999752478 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}{I|L}RN{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}RGG{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}NR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}RN{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}GGR{I|L} 10.229;9.3723;9.249;8.4107;8.3921;8.0328;7.5538;5.3064;4.3262;4.1849 +;-;-;+;-;-;-;-;-;- + 1166 NaN NaN 376337.5 NaN 11025 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14087 62.385 NaN 1115300 35 0 49760 0.261 + 22854 QYMERLQLL 9 109 597.3201718656029 1192.6257907980057 2 597.3198852539062 MULTI HCD FTMS 0 0 0 14084 362387.59375 1 0 0 3 Unmodified _QYMERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 110.6747026088012 0.0028322563155251486 1 {I|L}Q{I|L}[DC]{I|L}ATW 9 8 48.731 0 0 4.086 0 0 131.09287415796945 0 131.09287415796945 0 20.70944848895899 0 0 0 0.75 0 1.9843545039429593 0.9247425010840047 {I|L}Q{I|L}[DC]{I|L}ATW 4.086 - 3470 + NaN NaN 267270.4 NaN 11026 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14088 62.388 NaN 579120 35 0 35328 0.262 + 34669 YPTISLHAL 9 92 507.78446465218593 1013.5543763711719 2 507.7845153808594 MULTI HCD FTMS 0 0 0 14084 281548.125 0.8240782155097426 4 -0.10464859008789062 4 Unmodified _YPTISLHAL_ ENSG00000074201|ENST00000525428|CLNS1A 112.59319219568356 0.00251905749371435 1 YPT{I|L}S{I|L}HA{I|L} 9 0 + 83.709 0 0 8.2589 8.2589 94.189 0 0 0 56.2870828221435 9.137342758552677 9.137342758552677 15.151921918943046 0 2.353917193908117 1.6989700043360187 0.5 0 + + YPT{I|L}S{I|L}HA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{I|L}S{I|L}HA{I|L};[{I|L}T]PYS{I|L}HA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[QP][KP]A{I|L};[TP]Y{I|L}S{I|L}HA{I|L};[TP]{I|L}YS{I|L}HA{I|L};{I|L}[DV]{M(Oxidation (M))|F}S{I|L}HA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[QP][{I|L}P][KA];{I|L}[WK][QP]TE{I|L};[TP]Y[QP][KP]A{I|L} 8.2589;6.764;4.508;4.3409;4.0747;3.3025;2.9123;1.9058;1.6663;1.6515 +;+;-;-;-;-;-;-;-;- + 686 + NaN NaN 167287.2 NaN 11027 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14089 62.391 NaN 637890 35 0 77259 0.261 + 11038 IYFEYSHAF 9 88 588.77144573732 1175.52833854144 2 588.7551879882812 MULTI HCD FTMS 0 0 0 14084 196681.59375 0.7839104706007931 2 -0.059070587158203125 5 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 68.08070601005525 0.009709267492204555 1 {I|L}Y{M(Oxidation (M))|F}EYSQ 7 3 66.253 0 0 5.636 0 0 0 242.09290491275627 242.09290491275627 33.53027241216562 0 0 0 0 1.6307196863200843 1.6989700043360187 0.3807196863200844 0 {I|L}Y{M(Oxidation (M))|F}EYSQ 5.636 - 970 + NaN NaN 194578.4 NaN 11028 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14090 62.395 NaN 462840 35 0 100370 0.264 + 35701 YYLDWIHHY 9 71 437.2046514456232 1308.5921249370697 3 437.20458984375 MULTI HCD FTMS 0 0 0 14084 144995.984375 0.2915984942040052 7 -0.18529510498046875 6 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 45.69961567697781 0.039180348357221985 1 YY{I|L}DW{I|L}HHY 9 0 + 86.348 0 0 6.5986 6.5986 92.085 0 0 0 79.26985621489237 6.395067726032551 6.395067726032551 20 0 1.1989700043360187 2 0.8494850021680094 0 + + YY{I|L}DW{I|L}HHY;YY{I|L}DH[W{I|L}]HY 6.5986;5.0702 +;- + 234 + NaN NaN 167279.6 NaN 11029 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14091 62.398 NaN 478500 35 0 43938 0.261 -1 YDSCCVIDKIT 11 62 439.5336217219572 1315.5790357660717 3 439.5335998535156 MULTI HCD FTMS 0 0 0 14084 95995.125 0.02943976502194294 48 -1.2905197143554688 7 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 23.015651743759182 0.2565462835198615 1 {[YD]|[{M(Oxidation (M))|F}M]}SP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 -1 53.267 0 0 4.0489 0 0 0 128.07209192447502 128.07209192447502 37.693409159737854 0 0 0 0 1.774227503252014 2 0.3807196863200844 0 {[YD]|[{M(Oxidation (M))|F}M]}SP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 4.0489 - 174 + NaN NaN 145925.2 NaN 11030 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14092 62.401 NaN 251020 35 0 40374 0.261 + 30584 VNTSKGFLI 9 49 489.78455712811956 977.5545613230391 2 489.78485107421875 MULTI HCD FTMS 0 0 0 14084 44500.90234375 0.4544305763668023 -5 0.1331634521484375 8 Unmodified _VNTSKGFLI_ ENSG00000106992|ENST00000644144|AK1 14.838274106304384 0.23215694253501695 1 {I|L}{I|L} 2 7 24.464 0 0 2.5026 0 0 733.3757175221185 0 733.3757175221185 0 10.484550065040281 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.5026 + + 44 NaN NaN 121520.3 NaN 11031 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14093 62.405 NaN 164380 35 0 17529 0.261 + 11505 IYQYNCFIR 9 65 407.20398314209336 NaN 0 407.22772216796875 PEAK HCD FTMS 0 0 0 14084 26721.81640625 0.8139274369391655 3 -0.09183120727539062 9 Unmodified _IYQYNCFIR_ REV__ENST00000526353.1_1_11:9983413-9985421:-|nuORF 4.75600775471527 0.27219989241163056 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101646.8 NaN 11032 3059 14084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14095 62.41 NaN 1564300 35 0 191780 0.327 + 28993 TYDPWIGKL 9 108 546.7909191693185 NaN 0 546.8010864257812 PEAK HCD FTMS 0 0 0 14094 65843.4921875 0.7486919603778013 -2 0.052440643310546875 1 Unmodified _TYDPWIGKL_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 45.69961567697781 0.05999643521280087 1 K{I|L}ANE{I|L} 6 8 42.561 0 0 3.8991 0 0 149.08761579741616 271.0727633111938 420.16037910860996 0 0 0 0 0 0 0 0.8778623208748889 0.6861818737241735 K{I|L}ANE{I|L} 3.8991 - 317 + NaN NaN 327121.3 NaN 11033 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14096 62.414 NaN 321170 35 0 83032 0.261 + 3886 EPNPESLEL 9 57 514.2508094205297 1026.4870659078592 2 514.2509155273438 MULTI HCD FTMS 0 0 0 14094 178185.15625 0.3903339795401241 -3 0.08086776733398438 2 Unmodified _EPNPESLEL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 47.594388314883695 0.03493607795751234 1 R[EP]S{I|L}E{I|L} 7 3 50.934 0 0 4.962 0 0 184.02997023750157 0 184.02997023750157 0 28.25843240721518 0 0 0 1.8494850021680094 0 0.8494850021680094 0 R[EP]S{I|L}E{I|L} 4.962 - 111 NaN NaN 132049 NaN 11034 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14097 62.418 NaN 369610 35 0 89334 0.261 + 19628 NVDPDSVVL 9 56 479.2479502036451 956.4813474740902 2 479.2478332519531 MULTI HCD FTMS 0 0 0 14094 266274.25 0.4247594669614588 -2 0.052440643310546875 3 Unmodified _NVDPDSVVL_ ENSG00000099860|ENST00000215631|GADD45B 66.45667989310934 0.010234776021261575 1 {[NV]|[RG]}D[DP]SVV{I|L} 9 0 + 59.447 0 0 6.2152 6.2152 93.4 0 0 0 9.889917747712644 49.26985621489237 9.889917747712644 59.44714388449668 0 1.8494850021680094 0 0.6861818737241735 0.4247425010840047 + + {[NV]|[RG]}D[DP]SVV{I|L} 6.2152 + + 102 NaN NaN 137833.7 NaN 11035 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14098 62.421 NaN 1168900 35 0 393540 0.261 + 5950 FPDPRGLYHF 10 54 416.87676888716965 1247.608477261709 3 416.88531494140625 MULTI HCD FTMS 0 0 0 14094 90853.8359375 0.6364386574189356 4 -0.10004806518554688 4 Unmodified _FPDPRGLYHF_ ENSG00000205336|ENST00000562631|ADGRG1;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1 5.40270961882225 0.4467063037482923 1 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.7625 0 0 1082.5294652761604 0 1082.5294652761604 0 2.5257498915995313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7625 + + 21 + NaN NaN 254182.9 NaN 11036 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14099 62.424 NaN 233050 35 0 68411 0.261 -1 0 54 610.1814219317231 609.174145465123 1 610.1844482421875 MULTI HCD FTMS 0 0 0 14094 82618.3828125 0.8031143069155458 -1 0.0328826904296875 5 NaN NaN 1 D 1 -1 9.2917 0 0 1.5253 0 0 146.99932354305116 344.12433801822505 491.1236615612762 0 0 0 0 0 0 0 0.3807196863200844 0 D 1.5253 - 4 + NaN NaN 115970.5 NaN 11037 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14100 62.428 NaN 318320 35 0 54744 0.262 + -1 RQCSLSKFYFF 11 54 494.9113945502776 1481.7123542510328 3 494.91143798828125 MULTI HCD FTMS 0 0 0 14094 58670.22265625 0.6530501300093334 3 -0.07176589965820312 6 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))SLSKFYFF_ REV__ENSG00000064989|ENST00000392370|CALCRL 6.623454094837244 0.3898724468670146 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 29.222 0 0 1.9722 0 0 1169.5659710542773 0 1169.5659710542773 0 2.2981877066301593 0 0 0 0.8252574989159953 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9722 + + 57 NaN NaN 134067.1 NaN 11038 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14101 62.431 NaN 503350 35 0 44177 0.261 + 13961 KYRPLFDYF 9 77 624.8243037855011 1247.6340546378021 2 624.8234252929688 MULTI HCD FTMS 0 0 0 14094 146361.8125 0.34488850754312766 -3 0.08086776733398438 7 Unmodified _KYRPLFDYF_ ENSG00000196305|ENST00000443024|IARS1 51.629811660486645 0.02929079705179888 1 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F} 9 4 + 53.935 0 0 4.323 4.323 87.491 0 0 0 13.969319389390833 22.73727878127538 13.969319389390833 15.268024924119665 0 0.5 2 0 0.805462187404089 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RYK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RP{[HG]|PP}{M(Oxidation (M))|F};KYRYSKKE{M(Oxidation (M))|F};[R{I|L}]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{NN|[MP]|[D{I|L}]|[EV]}YQ{M(Oxidation (M))|F} 4.323;3.0992;2.4613;1.7085;0.85829 -;-;-;-;- 369 NaN NaN 158968.1 NaN 11039 3060 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14103 62.436 NaN 1516400 35 0 156630 0.327 + 11111 IYIDRGVVF 9 104 541.3055772164209 1080.5966014996418 2 541.305908203125 MULTI HCD FTMS 0 0 0 14102 699472.0625 0.9652999949973521 -1 0.026187896728515625 1 Unmodified _IYIDRGVVF_ ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 79.59630418116434 0.005983006570063981 1 {I|L}Y{I|L}DRGVV{M(Oxidation (M))|F} 9 0 + 91.876 0 0 8.5024 8.5024 93.617 0 0 0 62.94837287805555 16.478174818886373 16.478174818886373 11.453650195120844 0 2.610924374808178 1.6989700043360187 0.23965182871044374 0.3252574989159953 + + {I|L}Y{I|L}DRGVV{M(Oxidation (M))|F};{I|L}Y{I|L}D[VG]RV{M(Oxidation (M))|F};[Y{I|L}]{I|L}DRGVV{M(Oxidation (M))|F};[Y{I|L}]Q[KQ]GVV{M(Oxidation (M))|F};[Y{I|L}]{I|L}DRAA{I|L}{M(Oxidation (M))|F};[Y{I|L}][TP][VS]RV{M(Oxidation (M))|F};[Y{I|L}][AG][KQ]GVV{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}TV[KQ]GVV{M(Oxidation (M))|F};[Y{I|L}]Q[KQ]AA{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}TV[KQ]AA{I|L}{M(Oxidation (M))|F} 8.5024;7.4424;6.5882;4.9953;4.5018;4.3703;4.1431;3.0773;2.9089;0.99088 +;-;+;-;-;-;-;-;-;- + 1802 + NaN NaN 319952.6 NaN 11040 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14104 62.44 NaN 870090 35 0 198430 0.261 + 3226 EDLIAYLK 8 67 482.7711603734485 963.527767813697 2 482.7711486816406 MULTI HCD FTMS 0 0 0 14102 384710.46875 1 0 0 2 Unmodified _EDLIAYLK_ CON__P62894 39.957323273324995 0.23147789240432073 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY{I|L}K 8 0 + 47.414 0 0 4.9209 4.9209 90.811 0 0 0 -1.0340874929963917 10.287049245784772 -1.0340874929963917 47.41434719156942 0 0.7059771852360797 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY{I|L}K 4.9209 + + 182 + NaN NaN 211222.1 NaN 11041 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14105 62.444 NaN 593770 35 0 156670 0.261 -1 HPWMQDVLL 9 73 577.7866920795215 1153.5588312258428 2 577.7869262695312 MULTI HCD FTMS 0 0 0 14102 318416.9375 0.7196904919144368 8 -0.20806884765625 3 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 17.11289562659939 0.2125047172822487 1 V{I|L}{I|L} 3 -1 31.198 0 0 2.7045 0 0 810.3108998029312 0 810.3108998029312 0 20.18491783126585 0 0 0 0.5 0 0 0 V{I|L}{I|L} 2.7045 + + 15 NaN NaN 178763.4 NaN 11042 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14106 62.447 NaN 425390 35 0 29546 0.261 + 6025 FPDRIMNTF 9 72 570.7786329085807 1139.5427128839613 2 570.778564453125 MULTI HCD FTMS 0 0 0 14102 260389.96875 0.7627775517181876 4 -0.10000228881835938 4 Unmodified _FPDRIMNTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 103.82355648334675 0.003950725192926219 1 R{I|L}MNT{M(Oxidation (M))|F} 6 3 65.073 0 0 5.7104 0 0 359.1467457501969 0 359.1467457501969 0 40.591517729002206 0 0 0 1.805462187404089 0 0.28872548999643577 0.75 + R{I|L}MNT{M(Oxidation (M))|F} 5.7104 + + 779 NaN NaN 146810.5 NaN 11043 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14107 62.45 NaN 233950 35 0 22914 0.261 + 24005 RWFDKSFTF 9 78 617.3059297494793 1232.5973065657586 2 617.3059692382812 MULTI HCD FTMS 0 0 0 14102 75514.7734375 0.2461499733882037 10 -0.2730979919433594 5 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 20.41453444215458 0.18397929046831515 1 EE 2 9 8.4434 0 0 0.685 0 0 132.10611450584184 839.3797805564786 971.4858950623204 0 0 0 0 0 0 0 0.3494850021680094 0 EE 0.685 - 47 + NaN NaN 118966.1 NaN 11044 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14108 62.454 NaN 523290 35 0 113160 0.263 + 35956 YYVPRGFWKQF 11 49 497.59082808686696 1489.750654860801 3 497.5909423828125 MULTI HCD FTMS 0 0 0 14102 156981.265625 1 0 0 6 Unmodified _YYVPRGFWKQF_ ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;nc|ENSG00000114374|O00507-2|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 34.221707139014875 0.1741640856101893 1 YYV 3 8 55.445 0 0 3.7218 0 0 0 1061.5322982413722 1061.5322982413722 33.23908740944319 0 0 0 0 0.9247425010840047 2 0 0 + YYV 3.7218 + + 23 + NaN NaN 159078.5 NaN 11045 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14109 62.46 NaN 213400 35 0 17572 0.261 + 3716 EMAQQLYS 8 56 485.2224245068751 NaN 0 485.2388000488281 PEAK HCD FTMS 0 0 0 14102 28755.1953125 0.554864361682081 4 -0.10000228881835938 7 Unmodified _EMAQQLYS_ ENSG00000126733|ENST00000373125|DACH2;nc|ENSG00000126733|Q96NX9-3|DACH2;nc|ENSG00000126733|Q96NX9-4|DACH2 6.723162845929126 0.38822285293237185 1 PD{I|L}D{I|L} 5 7 16.287 0 0 1.6817 0 0 146.99897391433768 265.1300142877563 412.128988202094 0 0 0 0 0 0 0 0 0 PD{I|L}D{I|L} 1.6817 - 27 + NaN NaN 113346.3 NaN 11046 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14110 62.464 NaN 195330 35 0 57111 0.261 -1 WLSGPLCVMY 10 51 621.2883727869586 1240.562192640717 2 621.288818359375 MULTI HCD FTMS 0 0 0 14102 59398.1328125 0.6743359357884857 -1 0.026187896728515625 8 Carbamidomethyl (C),Oxidation (M) _WLSGPLC(Carbamidomethyl (C))VM(Oxidation (M))Y_ ENSG00000187918|ENST00000641930|OR51I2 7.289230182591677 0.43672065049472153 1 D{M(Oxidation (M))|F}QEQ 5 -1 14.641 0 0 1.1802 0 0 166.12354625575455 424.1523531549438 590.2758994106983 0 0 0 0 0 0 0 0.5 0 D{M(Oxidation (M))|F}QEQ 1.1802 - 51 + NaN NaN 122957.6 NaN 11047 3061 14102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14112 62.468 NaN 1229000 35 0 109960 0.327 + 27070 SYMGHFDLL 9 114 549.7497688734081 1097.4849848136162 2 549.7504272460938 MULTI HCD FTMS 0 0 0 14111 449852.84375 0.04342948391502183 76 -2.062213897705078 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 50.64 0 0 4.6142 4.6142 89.17 0 0 0 5.6424927368725974 33.569233304795034 5.6424927368725974 25.159940911636763 0 1.7474250108400469 0 0.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D[HS][YT]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}R[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}R{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}D[HS][{I|L}T]Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]{I|L}{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[PA][WQ]S{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D[EP]{M(Oxidation (M))|F}AA[KA] 4.6142;2.3217;2.2858;2.0287;1.7329;1.5003;1.1014;0.51109;0.49803;0.32856 +;-;-;-;-;-;-;-;-;- + 1311 NaN NaN 271316 NaN 11048 3062 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14113 62.473 NaN 294480 35 0 22407 0.261 + 27462 SYVVAMETF 9 69 531.7441522578185 1061.473751582437 2 531.7443237304688 MULTI HCD FTMS 0 0 0 14111 54366.97265625 0.44961710032587193 1 -0.0128173828125 2 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 99.79894945604345 0.0042691968066200965 1 {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 79.615 5.2288 2.0907 7.5004 7.5004 66.012 0 0 0 0 58.81305428125607 0 0 0 2.75 0 1.1549471895720984 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 7.5004 + + 956 + NaN NaN 127842.9 NaN 11049 3062 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14114 62.476 NaN 398470 35 0 58541 0.261 + -1 VNCMERVI 8 57 490.23923124308004 978.4639095529601 2 490.2394714355469 MULTI HCD FTMS 0 0 0 14111 127813.2109375 1 0 0 3 Oxidation (M) _VNCM(Oxidation (M))ERVI_ REV__ENSG00000205476|ENST00000380243|CCDC85C 20.453626601364224 0.4433031943603284 1 V{I|L} 2 -1 19.068 0 0 1.9488 0 0 748.2997489029111 0 748.2997489029111 0 0.11561899423568534 0 0 0 0.3494850021680094 0 0 0 V{I|L} 1.9488 + + 52 NaN NaN 138974.1 NaN 11050 3062 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14116 62.481 NaN 5625600 35 0 852050 0.327 + 5150 FFDAELSQM 9 102 552.2393276201218 1102.4641023070435 2 552.2396240234375 MULTI HCD FTMS 0 0 0 14115 2993001.25 0.4714141686753212 6 -0.1624908447265625 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.453 3.7236 1.266 8.9303 8.9303 68.21 0 0 0 0 72.34153255283901 0 0 0 3.2302046884880937 0 1.6906140654642812 0.9559771852360797 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9303 + + 5361 + NaN NaN 610602.4 NaN 11051 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14117 62.486 NaN 7066100 35 0 648590 0.189 + 10968 IYDSVKVYF 9 133 567.2967680278759 1132.5789831225518 2 567.2798461914062 MULTI HCD FTMS 0 0 0 14115 1453011.5 0.8166620789505891 1 -0.02828216552734375 2 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 59.368380827593164 0.01846506874148156 1 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F} 9 3 + 76.693 0 0 6.7715 6.7715 86.381 0 0 0 6.2679152944645296 6.2679152944645296 6.2679152944645296 4.018637558036673 0 1.305462187404089 2 0.805462187404089 0 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKVY{M(Oxidation (M))|F};{I|L}YDS{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[{I|L}T];{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SVKVY{M(Oxidation (M))|F};{I|L}YDAY{M(Oxidation (M))|F}K[{I|L}T];[Y{I|L}]DSKVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKYV{M(Oxidation (M))|F} 6.7715;6.4167;6.3502;6.2181;6.084;5.9954;5.9095;5.8839;5.7292;5.6627 -;-;-;-;-;-;-;-;-;- 9474 NaN NaN 648356.2 NaN 11052 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14118 62.488 NaN 647530 35 0 48508 0.261 + 597 APFKFDMEL 9 103 557.268033382246 1112.521513831292 2 557.2675170898438 MULTI HCD FTMS 0 0 0 14115 320211.96875 0.35093198439989187 19 -0.5350990295410156 3 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 121.5340881639634 0.001118397630175091 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 90.913 0 0 8.1718 8.1718 93.626 0 0 0 13.392966803802949 13.392966803802949 13.392966803802949 13.392966803802949 0 3.004432191740108 0 2.1025684359364405 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{I|L}MQA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D[VP][QT]{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D[VP][TA]G{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{I|L}T]GPDG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}RRD{M(Oxidation (M))|F}NK;{I|L}W[YK]D{M(Oxidation (M))|F}E{I|L} 8.1718;6.968;5.3697;5.0836;4.3785;3.6699;3.4974;3.4464;3.4372;3.2557 +;+;-;-;-;-;-;-;-;- + 2854 + NaN NaN 183933.7 NaN 11053 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14119 62.491 NaN 687720 35 0 87167 0.261 + 13307 KYMDVQFDF 9 76 604.7680796891424 1207.5216064450847 2 604.7682495117188 MULTI HCD FTMS 0 0 0 14115 321455.9375 0.06071519029360621 75 -2.049396514892578 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 69.33821966488729 0.009302356455414924 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 66.524 0 0 5.5091 5.5091 82.229 0 0 0 0.14568035994955153 8.302106383188452 0.14568035994955153 0.14568035994955153 0 1.8494850021680094 0 0.3252574989159953 0.6694451763165201 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG]T[MT]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[MT]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.5091;5.4971;5.243;4.9937;4.7899;4.7466;4.6642;4.6478;4.4805;4.4149 -;-;-;-;-;-;-;-;-;- 1373 NaN NaN 190364.4 NaN 11054 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14120 62.495 NaN 249230 35 0 37869 0.261 + 21574 PYMDSPQSIGF 11 63 629.2764609080789 1256.5383688829577 2 629.2763061523438 MULTI HCD FTMS 0 0 0 14115 117442.0234375 0.608197442934124 1 -0.02828216552734375 5 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 42.312485326615175 0.12205692784641806 1 S[QP]S{I|L}G{M(Oxidation (M))|F} 7 4 51.119 0 0 4.0682 0 0 522.1835804669937 0 522.1835804669937 0 44.1292603010276 0 0 0 1.8807196863200843 0 1.1861818737241734 0 + S[QP]S{I|L}G{M(Oxidation (M))|F} 4.0682 + + 105 NaN NaN 130076.8 NaN 11055 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14121 62.498 NaN 273990 35 0 21193 0.261 + 17044 LYKELGEYF 9 70 581.2944882941952 1160.5744236551902 2 581.29443359375 MULTI HCD FTMS 0 0 0 14115 89506.1796875 0.3993624515480536 6 -0.1624908447265625 6 Unmodified _LYKELGEYF_ ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1 45.739877483867886 0.03899552410870734 1 {I|L}GEY{M(Oxidation (M))|F} 5 4 39.737 0 0 3.4239 0 0 533.2833119123062 0 533.2833119123062 0 9.675390846596486 0 0 0 1.1307196863200843 0 0.3252574989159953 0 + {I|L}GEY{M(Oxidation (M))|F} 3.4239 + + 86 NaN NaN 131372.1 NaN 11056 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14122 62.501 NaN 140590 35 0 7653.4 0.261 + 34803 YRDDFYDRL 9 54 631.7937039303056 1261.572854927411 2 631.79443359375 MULTI HCD FTMS 0 0 0 14115 37524.9375 0.07719095426961892 28 -0.7261886596679688 7 Unmodified _YRDDFYDRL_ ENSG00000125970|ENST00000246194|RALY 3.5964929083625545 0.32375295897743744 1 MHY 3 8 20.177 0 0 1.5994 0 0 0 827.3811739557249 827.3811739557249 3.187587626244124 0 0 0 0 0 0 0 0 MHY 1.5994 - 42 + NaN NaN 102750.1 NaN 11057 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14123 62.505 NaN 160170 35 0 22230 0.263 + 30615 VPDEELDAL 9 53 500.7453733631158 999.4761937930316 2 500.7449645996094 MULTI HCD FTMS 0 0 0 14115 62876.05859375 1 0 0 8 Unmodified _VPDEELDAL_ ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF;nc|ENSG00000186716|P11274-2|BCR 26.88365393820708 0.12808753336095696 1 DA{I|L} 3 6 35.005 0 0 3.5023 0 0 682.3170028535176 0 682.3170028535176 0 14.035984316004217 0 0 0 0.8807196863200843 0 0 0 + DA{I|L} 3.5023 + + 64 NaN NaN 119306.6 NaN 11058 3063 14115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14125 62.51 NaN 297810 35 0 21987 0.327 + 2875 DYRYRVSW 8 87 572.7797832153976 1143.5450134975952 2 574.2693481445312 MULTI HCD FTMS 0 0 0 14124 8079.5283203125 0.2700095805422177 4 -0.11136245727539062 1 Unmodified _DYRYRVSW_ REV__ENSG00000149256|ENST00000278550|TENM4 9.347437153973935 0.5250182646323369 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 23.301 0 0 2.0376 0 0 0 775.3995416560514 775.3995416560514 9.232712163289278 0 0 0 0 0 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}S 2.0376 - 563 NaN NaN 134834.5 NaN 11059 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14126 62.514 NaN 484340 35 0 24851 0.261 + -1 CIFWRSVLL 9 81 597.3304154381748 NaN 0 597.319091796875 PEAK HCD FTMS 0 0 0 14124 27256.4140625 0.37188235422028715 2 -0.052364349365234375 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))IFWRSVLL_ REV__ENSG00000139835|ENST00000375431|GRTP1;REV__nc|ENSG00000139835|Q5TC63-2|GRTP1;REV__nc|ENSG00000139835|Q5TC63-3|GRTP1 28.486842064014134 0.13043271994793734 1 TA{I|L}V{I|L}NAT 8 -1 20.897 0 0 1.7521 0 0 205.09569728912385 201.06687341861564 406.1625707077395 0 0 0 0 0 0 0 0.6307196863200843 0 TA{I|L}V{I|L}NAT 1.7521 - 554 + NaN NaN 161436.5 NaN 11060 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14127 62.518 NaN 389080 35 0 38390 0.262 + -1 FLCNVFVI 8 66 506.271350661685 NaN 0 506.2607727050781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FLC(Carbamidomethyl (C))NVFVI_ REV__ENST00000354371.6_1_2:238006612-238006942:+|nuORF 6.354104778181461 0.38822285293237185 1 {M(Oxidation (M))|F}V 2 -1 10.969 0 0 1.0855 0 0 131.1146362625389 630.2537302495252 761.3683665120641 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 1.0855 + + 91 + NaN NaN 147303.4 NaN 11061 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14128 62.521 NaN 644020 35 0 158730 0.263 + 4267 EVILIDPFHK 10 51 404.23236799717034 1209.675274591711 3 404.5668029785156 MULTI HCD FTMS 0 0 0 14124 81530.8046875 0.07822570978001216 17 -0.4741477966308594 4 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 3.8459078486920597 0.4549467030100971 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 6 4 26.911 0 0 2.2247 0 0 0 524.2622938472446 524.2622938472446 12.21848749616356 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 2.2247 + + 38 + NaN NaN 176436 NaN 11062 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14129 62.524 NaN 255640 35 0 15475 0.261 + 5519 FLDGNEMTL 9 68 528.2395612683779 1054.4645696035557 2 528.2394409179688 MULTI HCD FTMS 0 0 0 14124 79784.2421875 0.6695124248178922 3 -0.081878662109375 5 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 43.77239144664712 0.04802738721622131 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{M(Oxidation (M))|F}T{I|L} 9 0 + 31.25 0 0 2.9636 2.9636 87.895 0 0 0 4.167724800373456 10.614940251032873 4.167724800373456 31.249802826243936 0 0.8945990182825423 0 0 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{M(Oxidation (M))|F}T{I|L} 2.9636 + + 155 NaN NaN 145575.3 NaN 11063 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14130 62.528 NaN 166400 35 0 34809 0.261 + 19134 NFTLPDSF 8 42 470.7241829469553 939.4338129607106 2 470.7245178222656 MULTI HCD FTMS 0 0 0 14124 37226.4765625 0.4058279757245324 -1 0.02828216552734375 6 Unmodified _NFTLPDSF_ REV__ENSG00000117461|ENST00000262741|PIK3R3;REV__nc|ENSG00000117461|Q92569-2|PIK3R3;REV__nc|ENSG00000117461|Q92569-3|PIK3R3 21.74664581756881 0.4337896562907935 1 S{M(Oxidation (M))|F} 2 -1 35.217 0 0 3.7487 0 0 687.3231237290685 0 687.3231237290685 0 31.721675119240516 0 0 0 1 0 0.4247425010840047 0 S{M(Oxidation (M))|F} 3.7487 + + 36 + NaN NaN 103831.9 NaN 11064 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14131 62.531 NaN 342980 35 0 14452 0.261 + 16137 LPTLNVFLV 9 88 508.312844906937 1014.611136880674 2 508.3128967285156 MULTI HCD FTMS 0 0 0 14124 63452.5390625 0.8758309930356667 3 -0.081878662109375 7 Unmodified _LPTLNVFLV_ ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF 36.12702656103203 0.08312389501731911 1 {I|L}PT 3 6 27.128 0 0 2.6737 0 0 0 700.4039871278891 700.4039871278891 4.458865705675876 0 0 0 0 0.6861818737241735 0 0.7614393726401688 0 + {I|L}PT 2.6737 + + 382 + NaN NaN 131697.5 NaN 11065 3064 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14133 62.536 NaN 11084000 35 0 1627400 0.327 + 20014 NYIGLINRI 9 105 538.3164166178896 1074.618280302579 2 538.3170166015625 MULTI HCD FTMS 0 0 0 14132 5414906.5 0.8504755009744512 1 -0.02622222900390625 1 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 152.41221235671458 6.276234901293889E-06 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 113.4 0 0 10.553 10.553 94.116 0 0 0 22.71652514092061 16.478174818886373 16.478174818886373 9.208187539523749 0 2.7302046884880937 1.6989700043360187 0 2.528659694992122 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]G{I|L}{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};[Y{I|L}]NG{I|L}{I|L}NR{I|L};[YN]G{I|L}{I|L}{I|L}GGR{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};[Y{I|L}]NG{I|L}{I|L}GGR{I|L};NY{I|L}G{I|L}{I|L}{I|L}[RN] 10.553;9.6958;8.8316;8.4572;8.4387;8.2463;7.9747;7.5819;7.3894;7.2026 +;-;-;-;+;-;-;-;-;- + 1651 NaN NaN 759968.3 NaN 11066 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14134 62.54 NaN 1083300 35 0 134920 0.261 + -1 YILPNLMPTF 10 94 612.8215780290823 1223.6286031249645 2 612.8062133789062 MULTI HCD FTMS 0 0 0 14132 41967.046875 0.8301986344749183 2 -0.055736541748046875 2 Oxidation (M) _YILPNLM(Oxidation (M))PTF_ REV__nc|ENSG00000260811|A6NMZ5|OR4C45 10.073929032068715 0.4168838835836452 1 [Y{I|L}]S[NP]GTQSY 10 -1 63.862 0 0 5.219 0 0 0 110.0917736844589 110.0917736844589 36.19280313679916 0 0 0 0 0 1.6989700043360187 1.4476212463643423 0 [Y{I|L}]S[NP]GTQSY 5.219 - 2322 NaN NaN 252982.2 NaN 11067 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14135 62.544 NaN 626640 35 0 59224 0.261 + 31795 VYMDWYEKF 9 74 648.7838334379875 1295.5531139427749 2 648.78369140625 MULTI HCD FTMS 0 0 0 14132 166680.953125 0.08543630385277443 21 -0.5447196960449219 3 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 87.25819977447905 0.004597812622239197 1 VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 111.21 0 0 8.5838 8.5838 93.164 0 0 0 9.27440017027358 9.27440017027358 9.27440017027358 9.27440017027358 0 3.0356668758921828 2 0.6237125054200234 0 + + VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWEYK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYTGV{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};VY{[HG]|PP}EWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWE{[HG]|PP}P{M(Oxidation (M))|F};V{[HG]|PP}YEWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[YV]WYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}D{[SA]|[TG]}[WY]V{M(Oxidation (M))|F} 8.5838;7.868;6.8199;6.7846;5.8492;5.3166;5.0808;4.8012;4.5314;3.6572 +;+;-;-;-;-;-;-;-;- + 653 + NaN NaN 173655.2 NaN 11068 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14136 62.547 NaN 405440 35 0 39236 0.261 + 11039 IYFEYSHAF 9 77 588.77144573732 1175.52833854144 2 588.7551879882812 MULTI HCD FTMS 0 0 0 14132 41356.69921875 0.16483469006395401 8 -0.23220443725585938 4 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 37.97399986684836 0.07464525285885698 1 {I|L}Y{M(Oxidation (M))|F}EY 5 4 47.682 0 0 4.0562 0 0 0 457.1844576471313 457.1844576471313 16.754354679996254 0 0 0 0 0.9634679910804405 1.6989700043360187 0 0 + {I|L}Y{M(Oxidation (M))|F}EY 4.0562 + + 447 + NaN NaN 153317.4 NaN 11069 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14137 62.55 NaN 352090 35 0 43614 0.264 + 35702 YYLDWIHHY 9 64 437.2046514456232 1308.5921249370697 3 437.20440673828125 MULTI HCD FTMS 0 0 0 14132 102766.3515625 0.20667133300024823 13 -0.36309814453125 5 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 39.94969957227396 0.06557568441294001 1 YY{I|L}DW{I|L}H{[WN]|[YH]} 9 0 + 70.556 0 0 5.3918 5.3918 92.243 0 0 0 55.07183756753818 2.3764301679958777 2.3764301679958777 70.55638763257846 0 0.8494850021680094 2 0 0 + + YY{I|L}DW{I|L}H{[WN]|[YH]} 5.3918 + + 296 + NaN NaN 135974.1 NaN 11070 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14138 62.554 NaN 188880 35 0 12452 0.261 + -1 NYAACKYSGKD 11 49 638.7851877612163 1275.5558225892325 2 638.7864990234375 MULTI HCD FTMS 0 0 0 14132 59330.31640625 0.5611768835290618 -6 0.1590728759765625 6 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 26.268140514670165 0.22820724222159966 1 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY 7 -1 54.481 0 0 4.2711 0 0 0 428.19394861392817 428.19394861392817 30.980910146099774 0 0 0 0 0.9247425010840047 2 0.9247425010840047 0 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY 4.2711 - 138 + NaN NaN 107578.1 NaN 11071 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14139 62.557 NaN 319820 35 0 15259 0.261 + 14648 LGHDAVIQALA 11 75 554.3108660989935 1106.607179264787 2 554.3125 MULTI HCD FTMS 0 0 0 14132 24434.34375 0.5646801638686744 1 -0.02622222900390625 7 Unmodified _LGHDAVIQALA_ CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 4.897010918128616 0.3974440401582579 1 QS{I|L}D{I|L}{[C(Carbamidomethyl (C))G]|[NC]}{M(Oxidation (M))|F} 8 9 19.149 0 0 1.7304 0 0 168.18611100482445 0 168.18611100482445 0 8.659423083538089 0 0 0 0 0 0 0 QS{I|L}D{I|L}{[C(Carbamidomethyl (C))G]|[NC]}{M(Oxidation (M))|F} 1.7304 - 230 + NaN NaN 143408.6 NaN 11072 3065 14132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14141 62.562 NaN 816140 35 0 104130 0.327 + 28994 TYDPWIGKL 9 95 546.7889371607571 NaN 0 546.8008422851562 PEAK HCD FTMS 0 0 0 14140 40217.6328125 0.4792073347940813 -5 0.12622451782226562 1 Unmodified _TYDPWIGKL_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 36.12702656103203 0.09069617296470832 1 K{I|L}ANE{I|L} 6 8 40.926 0 0 3.7493 0 0 149.08302968099116 271.0723055475219 420.1553352285131 0 0 0 0 0 0 0 0.785666875892183 0.6694451763165201 K{I|L}ANE{I|L} 3.7493 - 354 + NaN NaN 207233.1 NaN 11073 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14142 62.566 NaN 1948800 35 0 800280 0.263 + 5951 FPDPRGLYHF 10 62 416.87676888716965 1247.608477261709 3 416.88507080078125 MULTI HCD FTMS 0 0 0 14140 31583.4140625 0.22124443547404654 10 -0.29450225830078125 2 Unmodified _FPDPRGLYHF_ ENSG00000205336|ENST00000562631|ADGRG1;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1 5.047519993296601 0.4485863789024576 1 DY{M(Oxidation (M))|F} 3 7 27.435 0 0 2.199 0 0 804.4659444270203 0 804.4659444270203 0 6.237125054200234 0 0 0 0 0 0.4247425010840047 0 DY{M(Oxidation (M))|F} 2.199 - 52 NaN NaN 372768.2 NaN 11074 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14143 62.57 NaN 857590 35 0 204360 0.261 + 3887 EPNPESLEL 9 82 514.2508094205297 1026.4870659078592 2 514.2509155273438 MULTI HCD FTMS 0 0 0 14140 350344.65625 0.7674681031949278 3 -0.08184432983398438 3 Unmodified _EPNPESLEL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 66.45667989310934 0.010234776021261575 1 AS{I|L}E{I|L} 5 5 59.24 0 0 5.7712 0 0 495.197069236525 0 495.197069236525 0 33.77804008921409 0 0 0 1.4247425010840047 0 1.1549471895720984 0 AS{I|L}E{I|L} 5.7712 - 280 NaN NaN 212662.3 NaN 11075 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14144 62.573 NaN 540260 35 0 139180 0.261 + 19629 NVDPDSVVL 9 51 479.2479502036451 956.4813474740902 2 479.2479553222656 MULTI HCD FTMS 0 0 0 14140 214554.328125 0.3422560839008989 4 -0.11735153198242188 4 Unmodified _NVDPDSVVL_ ENSG00000099860|ENST00000215631|GADD45B 63.960520009940105 0.0120409805053046 1 {[NV]|[RG]}D[DP]SVV{I|L} 9 0 + 57.884 0 0 6.0518 6.0518 93.099 0 0 0 9.889917747712644 42.39963434401865 9.889917747712644 57.88418440905893 0 2.2302046884880937 0 0.3252574989159953 0.4247425010840047 + + {[NV]|[RG]}D[DP]SVV{I|L} 6.0518 + + 103 NaN NaN 170396.2 NaN 11076 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14145 62.577 NaN 525350 35 0 36642 0.261 + 5890 FPDKVAIQL 9 82 515.8004476549919 1029.5863423767837 2 515.80029296875 MULTI HCD FTMS 0 0 0 14140 115605.984375 0.13977902892609603 -13 0.3479347229003906 5 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 49.52724829834842 0.03223213920720493 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 57.053 0 0 5.5414 5.5414 83.609 0 0 0 18.741436528314566 35.37069682934217 18.741436528314566 3.0102999566398054 0 1.031234684152075 1.3979400086720375 0.3252574989159953 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA[AG]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}Q{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}GA{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VAQ{I|L}{I|L};[VP][YQ]VA{I|L}Q{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}GA{I|L} 5.5414;5.249;4.7609;3.8665;3.6547;3.3623;2.9022;2.8742;2.6308;2.6141 +;-;-;-;-;-;-;-;-;- + 536 NaN NaN 161012.6 NaN 11077 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14146 62.58 NaN 310630 35 0 14908 0.261 + 35092 YVAHLLDIL 9 78 528.8080160637394 1055.6014791942787 2 528.8084716796875 MULTI HCD FTMS 0 0 0 14140 41257.796875 0.13607455600151633 10 -0.29450225830078125 6 Unmodified _YVAHLLDIL_ nc|ENSG00000138081|Q86XK2-5|FBXO11 24.67388899826682 0.14717941214954053 1 [YV]PV 4 7 22.051 0 0 2.089 0 0 0 594.3292068156255 594.3292068156255 -0.026975159433533236 0 -0.026975159433533236 0 0 0 1.3010299956639813 0 0 [YV]PV 2.089 - 236 NaN NaN 137394.3 NaN 11078 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14147 62.583 NaN 285360 35 0 21029 0.261 -1 MVAMVEVQL 9 66 526.2619448493862 1050.5093367655722 2 526.26220703125 MULTI HCD FTMS 0 0 0 14140 38849.1953125 0.35792986033118845 5 -0.14687347412109375 7 2 Oxidation (M) _M(Oxidation (M))VAM(Oxidation (M))VEVQL_ ENSG00000160991|ENST00000495936|ORAI2;ENSG00000175938|ENST00000318663|ORAI3;ENSG00000276045|ENST00000617316|ORAI1;nc|ENSG00000276045|Q96D31-2|ORAI1 29.081581746732265 0.1154664336125038 1 VEVQ{I|L} 5 -1 43.025 0 0 4.0956 0 0 464.1755543439469 0 464.1755543439469 0 33.05966222270566 0 0 0 1.2302046884880937 0 0 0 VEVQ{I|L} 4.0956 + + 165 NaN NaN 130065 NaN 11079 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14148 62.587 NaN 290340 35 0 61350 0.261 + 14339 LDSHLAPII 9 65 489.78455712811956 977.5545613230391 2 489.7842712402344 MULTI HCD FTMS 0 0 0 14140 80957.3828125 0.8267138011820381 2 -0.05899810791015625 8 Unmodified _LDSHLAPII_ REV__ENST00000497858.1_1_1:38027150-38027537:+|nuORF 18.13498045792455 0.20367413111508956 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6565 0 0 733.3757590453124 0 733.3757590453124 0 14.542425094393248 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6565 + + 29 NaN NaN 125051 NaN 11080 3066 14140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14150 62.591 NaN 656380 35 0 74541 0.327 + 34183 YPDINFNRL 9 82 576.2957691552065 1150.5769853772128 2 576.2959594726562 MULTI HCD FTMS 0 0 0 14149 343145.4375 0.497174694608937 -4 0.11016082763671875 1 Unmodified _YPDINFNRL_ ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-2|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-5|PARG 125.52916310638031 0.0008761121089336018 1 YPD{I|L}N{M(Oxidation (M))|F}NR{I|L} 9 0 + 109.96 0 0 9.5567 9.5567 93.478 0 0 0 82.64014361800122 6.7074145675533 6.7074145675533 9.208187539523749 0 2.4916440611282624 2 0.2742275032520141 1.4674165578762484 + + YPD{I|L}N{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}NR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}GGR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}N{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N[R{I|L}]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{[WT]|[RM]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[DP]{I|L}YN{M(Oxidation (M))|F}NR{I|L} 9.5567;8.7564;8.7564;7.9599;6.9458;5.9183;4.926;4.8479;4.0951;3.9472 +;-;-;-;+;-;-;-;-;- + 1068 + NaN NaN 177962.8 NaN 11081 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14151 62.596 NaN 398950 35 0 42576 0.261 + 13962 KYRPLFDYF 9 62 624.8243037855011 1247.6340546378021 2 624.8240356445312 MULTI HCD FTMS 0 0 0 14149 194008.265625 0.4571631085973121 4 -0.11735916137695312 2 Unmodified _KYRPLFDYF_ ENSG00000196305|ENST00000443024|IARS1 75.76082778847304 0.0072241045649327805 1 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F} 9 4 + 52.866 0 0 4.2373 4.2373 89.263 0 0 0 13.123468415207498 21.66772480037345 13.123468415207498 35.47228775315752 0 0.5 2 0 0.7742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]R[Y{M(Oxidation (M))|F}]K 4.2373;1.3941 -;- 121 NaN NaN 148545.3 NaN 11082 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14152 62.6 NaN 605420 35 0 57889 0.261 + 11112 IYIDRGVVF 9 78 541.3055772164209 1080.5966014996418 2 541.3054809570312 MULTI HCD FTMS 0 0 0 14149 212725.53125 0.2935699154552496 5 -0.14694976806640625 3 Unmodified _IYIDRGVVF_ ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 47.594388314883695 0.03493607795751234 1 {I|L}Y{I|L}{[CA]|SS}PRV{M(Oxidation (M))|F} 9 4 + 66.053 0 0 6.1126 6.1126 85.444 0 0 0 4.7437850918995395 4.7437850918995395 4.7437850918995395 4.7437850918995395 0 2.1677353201839438 1.5228787452803376 0 0.3494850021680094 {I|L}Y{I|L}{[CA]|SS}PRV{M(Oxidation (M))|F};[Y{I|L}]{I|L}[RD]GVV{M(Oxidation (M))|F};[Y{I|L}][QA][KG]GVV{M(Oxidation (M))|F};[Y{I|L}][QA]{[QN]|[E{I|L}]|[KN]}VV{M(Oxidation (M))|F};[Y{I|L}]{I|L}[RD]AA{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T{[VA]|[{I|L}G]}[KG]GVV{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T{[VA]|[{I|L}G]}{[QN]|[E{I|L}]|[KN]}VV{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[NG]{I|L}{I|L}Y{I|L}{M(Oxidation (M))|F} 6.1126;5.6736;4.6125;4.2866;3.8699;2.5605;2.2305;1.8101 -;+;-;-;-;-;-;- + 947 + NaN NaN 183125.2 NaN 11083 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14153 62.603 NaN 1202100 35 0 386070 0.261 + 24710 RYLTVATVF 9 51 535.3056431478079 1068.5967333624158 2 535.3060913085938 MULTI HCD FTMS 0 0 0 14149 373540.78125 0.06652286970411775 -6 0.15573883056640625 4 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 51.629811660486645 0.02929079705179888 1 VTA[VP]ATV{M(Oxidation (M))|F} 9 4 58.862 0 0 5.5083 0 0 165.07903442118646 0 165.07903442118646 0 51.871987629411294 0 0 0 0 0 1.274227503252014 0 VTA[VP]ATV{M(Oxidation (M))|F} 5.5083 - 81 + NaN NaN 255306.7 NaN 11084 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14154 62.606 NaN 844160 35 0 206520 0.261 + 26091 SPHYQEWIL 9 92 586.7903293566119 1171.5661057800237 2 586.7905883789062 MULTI HCD FTMS 0 0 0 14149 252254.046875 0.4586826574937668 -4 0.11016082763671875 5 Unmodified _SPHYQEWIL_ ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 31.26834338654808 0.10542797264966089 1 DSEW{I|L}{I|L} 6 5 57.108 0 0 4.8745 0 0 410.19539076972814 0 410.19539076972814 0 37.74932786777548 0 0 0 1.2059771852360797 0 0.23965182871044374 0 DSEW{I|L}{I|L} 4.8745 - 1073 NaN NaN 210210.4 NaN 11085 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14155 62.609 NaN 613350 35 0 35816 0.261 + 5891 FPDKVAIQL 9 89 515.8004476549919 1029.5863423767837 2 515.8005981445312 MULTI HCD FTMS 0 0 0 14149 162549.921875 0.19653887603256073 -12 0.321746826171875 6 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 63.227496030279354 0.01306643085373406 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 65.198 0 0 6.3324 6.3324 84.767 0 0 0 21.013466144901656 36.821026868327024 21.013466144901656 2.498774732166005 0 1.5669015600442577 1.3010299956639813 0 0.23965182871044374 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}Q{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}GA{I|L};[VP][YQ]VA{I|L}Q{I|L};{M(Oxidation (M))|F}P{I|L}AASA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKV[Q{I|L}]A{I|L};[VP][YQ]VA{I|L}GA{I|L};[Q{I|L}]AQ[{I|L}T]P{M(Oxidation (M))|F}{I|L};[Q{I|L}]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVQ{I|L} 6.3324;6.0897;4.1415;3.8988;3.3852;3.2526;3.1442;3.1425;2.6356;2.6188 +;-;-;-;-;-;-;-;-;- + 487 NaN NaN 174612.8 NaN 11086 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14156 62.613 NaN 247290 35 0 45905 0.261 + 22364 QPQDVDLAL 9 52 499.76140386582676 997.5082547984535 2 499.76171875 MULTI HCD FTMS 0 0 0 14149 54735.71875 0.5058218988936952 -1 0.029514312744140625 7 Unmodified _QPQDVDLAL_ ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 27.628801355627647 0.12213550946336599 1 D{I|L}A{I|L} 4 5 49.993 0 0 5.0118 0 0 567.2650013654312 0 567.2650013654312 0 49.02372200412145 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + D{I|L}A{I|L} 5.0118 + + 22 NaN NaN 130252 NaN 11087 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14157 62.616 NaN 581180 35 0 91058 0.261 + 3262 EEAFAIFRKF 10 61 419.89211647467994 1256.65452002424 3 420.22705078125 MULTI HCD FTMS 0 0 0 14149 114736.890625 1 0 0 8 Unmodified _EEAFAIFRKF_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 7.945399516374404 0.4332474418965133 1 {I|L}A{M(Oxidation (M))|F}A[HC] 6 7 28.416 0 0 2.2613 0 0 596.3425136093027 0 596.3425136093027 0 6.478174818886373 0 0 0 0 0 0 0 {I|L}A{M(Oxidation (M))|F}A[HC] 2.2613 - 35 NaN NaN 167959 NaN 11088 3067 14149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14159 62.621 NaN 2319400 35 0 360500 0.327 + 5151 FFDAELSQM 9 100 552.2393276201218 1102.4641023070435 2 552.2394409179688 MULTI HCD FTMS 0 0 0 14158 1235337.625 0.19457247454297613 11 -0.3073616027832031 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 155.02607137521346 3.513045939247001E-06 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 90.442 0 0 8.2036 8.2036 91.785 0 0 0 4.762036441594191 55.496812376923046 4.762036441594191 9.208187539523749 0 2.7059771852360797 0 1.6549471895720984 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[DV]VSQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[DV]VS[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[SA]|[TG]}E{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[SA]|[TG]}E{I|L}D[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}];[NP]TYEA[YV]{M(Oxidation (M))|F} 8.2036;7.3684;5.5761;5.1862;4.7409;4.351;3.1927;2.3574;2.3279;1.4828 +;-;-;-;-;-;-;-;-;- + 2465 NaN NaN 434484.2 NaN 11089 3068 14158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14160 62.625 NaN 763330 35 0 71180 0.261 + 26720 SYDPDFNQL 9 107 549.7402460217376 1097.465939110275 2 549.7503662109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SYDPDFNQL_ ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF 60.07390631473393 0.0174780869009295 1 D[DP]{M(Oxidation (M))|F}E{I|L}{I|L} 7 4 49.117 0 0 4.4755 0 0 250.09516693556307 0 250.09516693556307 0 35.13759790242446 0 0 0 1.7302046884880937 0 0.7614393726401688 0 D[DP]{M(Oxidation (M))|F}E{I|L}{I|L} 4.4755 - 1042 NaN NaN 203056.4 NaN 11090 3068 14158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14161 62.629 NaN 1025400 35 0 253620 0.261 + 24874 RYQFLEEAF 9 76 601.7956025436106 1201.576652154021 2 601.7957153320312 MULTI HCD FTMS 0 0 0 14158 475120.96875 0.29413015009741356 -5 0.13964462280273438 3 Unmodified _RYQFLEEAF_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 60.07390631473393 0.0174780869009295 1 EE{I|L}{M(Oxidation (M))|F}[NP]A{M(Oxidation (M))|F} 8 6 64.175 0 0 5.3409 0 0 236.11612136054845 0 236.11612136054845 0 42.23705952196511 0 0 0 1.4247425010840047 0 0.7302046884880937 0.75 EE{I|L}{M(Oxidation (M))|F}[NP]A{M(Oxidation (M))|F} 5.3409 - 338 NaN NaN 231520.8 NaN 11091 3068 14158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14162 62.632 NaN 319750 35 0 145150 0.261 -1 0 58 560.3281819439018 559.3209054773017 1 560.3280639648438 MULTI HCD FTMS 0 0 0 14158 213889.375 0.047906302130648476 21 -0.5344200134277344 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 2.7685 0 0 394.2421223735892 0 394.2421223735892 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.7685 - 22 + NaN NaN 123694.3 NaN 11092 3068 14158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14163 62.636 NaN 463360 35 0 101470 0.262 + 12850 KYFGEKIGLYF 11 48 455.5797233005085 1363.7173405017254 3 455.5798034667969 MULTI HCD FTMS 0 0 0 14158 56811.9765625 0.42752009604005276 4 -0.11746597290039062 5 Unmodified _KYFGEKIGLYF_ ENSG00000047617|ENST00000682330|ANO2;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1 3.5926746625661337 0.403164415885289 1 Y{M(Oxidation (M))|F} 2 9 30.217 0 0 2.2157 0 0 1035.575535914202 0 1035.575535914202 0 23.226825097560422 0 0 0 0.9247425010840047 0 0 0 + Y{M(Oxidation (M))|F} 2.2157 + + 26 NaN NaN 144649.4 NaN 11093 3068 14158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14164 62.639 NaN 240070 35 0 21127 0.261 + 18177 MPDLDLHL 8 60 485.2391298169829 968.4637067007658 2 485.2392272949219 MULTI HCD FTMS 0 0 0 14158 76908.1484375 0.5582473394307288 -11 0.2922782897949219 6 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 70.71552829651908 0.028868882208589616 1 {M(Oxidation (M))|F}PD{I|L}D{I|L}H{I|L} 8 0 + 49.32 0 0 5.0927 5.0927 90.078 0 0 0 28.35138771613167 9.731975075880328 9.731975075880328 26.22486274231747 0 1.6747425010840047 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{I|L}DPE;[KS]A{I|L}{NN|[MP]|[D{I|L}]|[EV]}[YC(Carbamidomethyl (C))];[KS]A{I|L}[YE]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.0927;2.3848;0.012735;0.012735 +;-;-;- + 133 + NaN NaN 119816 NaN 11094 3068 14158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14166 62.644 NaN 4363200 35 0 422780 0.327 + 10969 IYDSVKVYF 9 118 567.2967680278759 1132.5789831225518 2 567.2799072265625 MULTI HCD FTMS 0 0 0 14165 511756.21875 0.28763151394209024 7 -0.21265792846679688 1 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 67.83816525789305 0.009787749748478139 1 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F} 9 3 + 63.418 0 0 5.5994 5.5994 84.556 0 0 0 4.725400257283205 4.725400257283205 4.725400257283205 4.725400257283205 0 0.6549471895720984 2 0.8609243748081782 0 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F};{I|L}YDAY{M(Oxidation (M))|F}K[{I|L}T];{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVVY{M(Oxidation (M))|F};{I|L}YDS{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[{I|L}T];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SVKVY{M(Oxidation (M))|F};[Y{I|L}]DSKVVY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{I|L}KVVY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[Y{I|L}]{I|L}KSYP;[Y{I|L}]DSVKVY{M(Oxidation (M))|F} 5.5994;5.1822;5.0679;5.0679;4.9203;4.5363;4.2715;4.1106;3.7576;3.7399 -;-;-;-;-;-;-;-;-;+ + 6248 NaN NaN 564064.8 NaN 11095 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14167 62.648 NaN 1700900 35 0 584530 0.261 + 10541 IPHMDIEAL 9 89 519.7681011370865 1037.521649340973 2 519.7680053710938 MULTI HCD FTMS 0 0 0 14165 439161.125 1 0 0 2 Unmodified _IPHMDIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 48.345845343767074 0.03388484103555672 1 Y{I|L}EA{I|L} 5 5 47.585 0 0 4.5864 0 0 430.2104969709 0 430.2104969709 0 29.981866023275877 0 0 0 0.7742275032520141 0 0.6109243748081782 0 Y{I|L}EA{I|L} 4.5864 - 719 NaN NaN 343596 NaN 11096 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14168 62.652 NaN 669350 35 0 128800 0.262 + 13308 KYMDVQFDF 9 73 604.7680796891424 1207.5216064450847 2 604.7680053710938 MULTI HCD FTMS 0 0 0 14165 195871.03125 0.03699526295216942 81 -2.214183807373047 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 59.05245873256422 0.018907022117377846 1 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 60.478 0 0 5.0084 5.0084 86.287 0 0 0 2.3764301679958777 47.55810179117964 2.3764301679958777 9.208187539523749 0 2.1549471895720984 0 0.28872548999643577 0 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{[MG]|[TS]}[PG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}[MT]{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY[YK][MD];[YK]{M(Oxidation (M))|F}[MT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}D{M(Oxidation (M))|F} 5.0084;4.2458;3.7547;3.7067;2.9958;2.9477;2.1359;1.863;1.0493;1.0125 +;-;-;-;-;-;-;-;-;- + 949 NaN NaN 185090.6 NaN 11097 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14169 62.655 NaN 480680 35 0 36177 0.261 + 598 APFKFDMEL 9 82 557.268033382246 1112.521513831292 2 557.267822265625 MULTI HCD FTMS 0 0 0 14165 164547.5 0.18033361129022824 25 -0.6353530883789062 4 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 83.42873516780209 0.004742894019233849 1 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 73.443 0 0 6.6015 6.6015 84.842 0 0 0 1.4211382937389772 1.4211382937389772 1.4211382937389772 1.4211382937389772 0 2.9291746928241125 0 1.673877368056628 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}MQA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 6.6015;6.4738;3.3248 +;+;- + 515 + NaN NaN 157955.1 NaN 11098 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14170 62.658 NaN 306750 35 0 32718 0.263 -1 YDSCCVIDKIT 11 65 439.5336217219572 1315.5790357660717 3 439.5333557128906 MULTI HCD FTMS 0 0 0 14165 61908.41015625 0.018986058384548858 58 -1.5753288269042969 5 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 12.227587767072771 0.3505430386502343 1 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 -1 47.792 0 0 3.6327 0 0 0 850.3797938483438 850.3797938483438 33.09894379144197 0 0 0 0 1.2302046884880937 2 0.3807196863200844 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 3.6327 - 73 + NaN NaN 128484.8 NaN 11099 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14171 62.662 NaN 419830 35 0 53040 0.261 + 18274 MPDVDLHL 8 70 470.23380515187733 938.4530573705547 2 470.2341613769531 MULTI HCD FTMS 0 0 0 14165 126605.8046875 0.09655005129939563 -9 0.23425674438476562 6 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 74.42276476219924 0.02458962149020947 1 MPDVD{I|L}H{I|L} 8 0 + 82.159 0 0 8.7547 8.7547 96.333 0 0 0 61.18948444925195 7.658715643802765 7.658715643802765 26.624087660102802 0 2.3169015600442577 1.3010299956639813 0.2614393726401688 0 + + MPDVD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DP][DV]M{I|L}H{I|L};[DP][DV][H{I|L}]M{I|L} 8.7547;5.9177;5.6081;3.255;0.21393 +;-;+;-;- + 284 + NaN NaN 145578.1 NaN 11100 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14172 62.665 NaN 376340 35 0 18396 0.261 + -1 CIFWRSVLL 9 82 597.3295185221134 NaN 0 597.3203735351562 PEAK HCD FTMS 0 0 0 14165 23513.548828125 0.5054341911919056 -2 0.05233001708984375 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))IFWRSVLL_ REV__ENSG00000139835|ENST00000375431|GRTP1;REV__nc|ENSG00000139835|Q5TC63-2|GRTP1;REV__nc|ENSG00000139835|Q5TC63-3|GRTP1 28.486842064014134 0.13043271994793734 1 TA{I|L}VN{I|L}AT 8 -1 25.949 0 0 2.1758 0 0 205.0935781342078 201.06685815982658 406.1604362940344 0 0 0 0 0 0.4247425010840047 0 0 0 TA{I|L}VN{I|L}AT 2.1758 - 574 + NaN NaN 136744.7 NaN 11101 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14173 62.668 NaN 246800 35 0 34574 0.262 + 12226 KLDTLVEF 8 49 482.7711603734485 963.527767813697 2 482.77099609375 MULTI HCD FTMS 0 0 0 14165 43276.515625 0.11249113070828021 8 -0.2254791259765625 8 Unmodified _KLDTLVEF_ ENSG00000102226|ENST00000377107|USP11;ENST00000467378.1_1_X:47106498-47106892:+|nuORF;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;nc|ENSG00000102226|P51784|USP11 8.593279151180031 0.5292430274356741 1 E{M(Oxidation (M))|F} 2 6 22.831 0 0 2.3695 0 0 669.4066568291252 0 669.4066568291252 0 5.383643918355361 0 0 0 0 0 0.4247425010840047 0 + E{M(Oxidation (M))|F} 2.3695 + + 58 + NaN NaN 124330.9 NaN 11102 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14174 62.674 NaN 216660 35 0 10108 0.26 + 27435 SYVHKVPSF 9 73 532.2822602653499 1062.5499675974997 2 532.2677001953125 MULTI HCD FTMS 0 0 0 14165 31650.232421875 0.33745703518450215 22 -0.5636978149414062 9 Unmodified _SYVHKVPSF_ ENSG00000123066|ENST00000281928|MED13L 10.823927491677226 0.26684000660059787 1 VA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 6 7 49.271 0 0 4.6371 0 0 350.2383353726935 0 350.2383353726935 0 33.07319389984244 0 0 0 0 0 0.75 0 VA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 4.6371 - 295 + NaN NaN 130781.6 NaN 11103 3069 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14176 62.679 NaN 3924100 35 0 561540 0.327 + 20015 NYIGLINRI 9 97 538.3164166178896 1074.618280302579 2 538.3167114257812 MULTI HCD FTMS 0 0 0 14175 2136570.75 0.3355738605964127 6 -0.17715072631835938 1 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 152.41221235671458 6.276234901293889E-06 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 110.02 0 0 10.238 10.238 93.974 0 0 0 23.558846066617576 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6747425010840047 1.6989700043360187 0 2.4679001828205482 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};[Y{I|L}]NG{I|L}{I|L}NR{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};[Y{I|L}]NG{I|L}{I|L}GGR{I|L};NY{I|L}G{I|L}[RN]{I|L}{I|L};[Y{I|L}]NG{I|L}[RN]{I|L}{I|L};[Y{I|L}]GGG{I|L}{I|L}NR{I|L} 10.238;9.3812;8.5739;8.0458;7.8494;7.1889;6.9925;6.3685;6.1852;5.6852 +;-;-;+;-;-;-;-;-;- + 1092 NaN NaN 501476.3 NaN 11104 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14177 62.684 NaN 749350 35 0 105500 0.261 + 8322 GYASRFIVI 9 68 513.2926510143773 1024.5707490955544 2 513.2928466796875 MULTI HCD FTMS 0 0 0 14175 277280.3125 0.750697589341395 -1 0.0355072021484375 2 Unmodified _GYASRFIVI_ ENSG00000153574|ENST00000283646|RPIA 57.72198328787511 0.020768266150574023 1 [YG]ASR{M(Oxidation (M))|F}{I|L}V{I|L} 9 0 + 74.135 0 0 7.2357 7.2357 93.852 0 0 0 60.411159568492465 11.264100213633768 11.264100213633768 25.779550148593486 0 2.7302046884880937 1.6989700043360187 0 0 + + [YG]ASR{M(Oxidation (M))|F}{I|L}V{I|L};[YG]ASRV{I|L}{I|L}{M(Oxidation (M))|F} 7.2357;4.7196 +;- + 339 + NaN NaN 194940.5 NaN 11105 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14178 62.687 NaN 824450 35 0 62061 0.261 + 5892 FPDKVAIQL 9 104 515.8004476549919 1029.5863423767837 2 515.80029296875 MULTI HCD FTMS 0 0 0 14175 337803.34375 0.40843753558811574 -9 0.2435760498046875 3 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 71.70789743142352 0.008535567138151097 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 71.276 0 0 6.9227 6.9227 86.118 0 0 0 22.25817726334342 16.47817481888638 16.47817481888638 3.0102999566398125 0 1.5228787452803376 1.3979400086720375 0.3807196863200844 0.23965182871044374 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}Q{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAAAV{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}GA{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VA{I|L}GA{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}GA{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L} 6.9227;6.6304;4.7609;4.7279;4.6104;4.4852;4.4685;4.4355;4.1928;4.0252 +;-;-;-;-;-;-;-;-;- + 1300 NaN NaN 211641.2 NaN 11106 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14179 62.691 NaN 3032900 35 0 178580 0.261 + 35475 YYFEGIKQTF 10 125 648.3188217650031 1294.6230905968062 2 648.3190307617188 MULTI HCD FTMS 0 0 0 14175 698297.0625 0.12600438075930454 -4 0.11735153198242188 4 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 176.4269993864032 3.3074236493791942E-12 1 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 115.79 0 0 8.9436 8.9436 92.204 0 0 0 9.067795724880753 8.138181262758266 8.138181262758266 9.164539485499262 0 2.6989700043360187 2 1.2931576817365436 0.25 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YEG{I|L}KQT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]EYG{I|L}KQT{M(Oxidation (M))|F};{M(Oxidation (M))|F}YYEG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[{I|L}V]NQT{M(Oxidation (M))|F} 8.9436;8.2357;7.1638;6.4559;6.4407;6.3159;6.2673;5.8801;5.8785;5.81 +;-;-;-;-;-;-;-;-;- + 20084 NaN NaN 540420.5 NaN 11107 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14180 62.694 NaN 621660 35 0 81313 0.263 + 26775 SYGKINILL 9 72 510.8080156168902 1019.6014783005804 2 510.8079528808594 MULTI HCD FTMS 0 0 0 14175 280574.9375 0.6036996447017282 -3 0.08783721923828125 5 Unmodified _SYGKINILL_ ENSG00000112249|ENST00000369162|ASCC3 47.594388314883695 0.03493607795751234 1 [KG]YS{I|L}N{I|L}{I|L}{I|L} 9 4 + 62.189 0 0 6.0994 6.0994 86.925 0 0 0 4.762036441594191 32.089380922211106 4.762036441594191 8.310384486277798 0 1.1549471895720984 0 0 0.3807196863200844 [KG]YS{I|L}N{I|L}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GK{I|L}N{I|L}{I|L}{I|L};[KG]YS{I|L}GG{I|L}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GK{I|L}GG{I|L}{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}[KG]{[{M(Oxidation (M))|F}C]|[YS]}{I|L} 6.0994;5.2843;5.1963;4.3812;0.89832 -;+;-;-;- + 300 NaN NaN 173757.5 NaN 11108 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14181 62.697 NaN 444780 35 0 79699 0.262 + 2269 DLLLLKDHPF 10 76 404.23236799717034 1209.675274591711 3 404.2327575683594 MULTI HCD FTMS 0 0 0 14175 68970.5546875 0.051568702481279906 23 -0.5670356750488281 6 Unmodified _DLLLLKDHPF_ REV__ENSG00000167721|ENST00000301364|TSR1 4.11662792887243 0.45351373858798727 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}V[YG]{I|L}{I|L}{I|L} 9 -1 24.359 0 0 2.0136 0 0 0 207.07741724185783 207.07741724185783 11.594290206405628 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}V[YG]{I|L}{I|L}{I|L} 2.0136 - 96 + NaN NaN 164996.1 NaN 11109 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14182 62.701 NaN 182230 35 0 9896.2 0.261 -1 ITSMAMVDY 9 61 531.7275937640176 NaN 0 531.7440795898438 PEAK HCD FTMS 0 0 0 14175 8581.6181640625 1 0 0 7 2 Oxidation (M) _ITSM(Oxidation (M))AM(Oxidation (M))VDY_ ENSG00000151224|ENST00000372213|MAT1A 15.847184025352803 0.21527282152051216 1 VA{M(Oxidation (M))|F}ET 5 -1 38.998 0 0 3.6741 0 0 349.1287336196228 162.05620752506096 511.18494114468376 0 0 0 0 0 0.25 0 1.0044321917401078 0 VA{M(Oxidation (M))|F}ET 3.6741 - 159 + NaN NaN 119110.1 NaN 11110 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14183 62.704 NaN 212310 35 0 20298 0.261 -1 VEHCCMRCC 9 54 578.6947946692013 1155.3750364052025 2 579.1959228515625 MULTI HCD FTMS 0 0 0 14175 17812.462890625 0.07776372513849304 13 -0.3564033508300781 8 Carbamidomethyl (C),Oxidation (M) _VEHC(Carbamidomethyl (C))CM(Oxidation (M))RCC_ ENSG00000170011|ENST00000302541|MYRIP;MYRIP|p.S404Rfs*2|1|0.41|ENSG00000170011|chr3:40190008-40190009|-/G|frameshift_variant;nc|ENSG00000170011|Q8NFW9-2|MYRIP;nc|ENSG00000170011|Q8NFW9-5|MYRIP 0.5247636613948944 0.34703895399870666 1 {I|L} 1 -1 6.9897 0 0 0.60497 0 0 130.90665546358474 908.3612443699037 1039.2678998334884 0 0 0 0 0 0 0 0 0 {I|L} 0.60497 - 3 + NaN NaN 134743.8 NaN 11111 3070 14175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14185 62.709 NaN 2177100 35 0 510980 0.327 + 9343 HPSDIEVDLL 10 118 569.2928560740897 1136.5711592149794 2 569.2930908203125 MULTI HCD FTMS 0 0 0 14184 1140754.625 1 0 0 1 Unmodified _HPSDIEVDLL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 92.4914307365334 0.0008111888129278865 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S{[{M(Oxidation (M))|F}C]|[YS]}VD{I|L}{I|L} 10 5 + 76.507 0 0 6.7314 6.7314 85.263 0 0 0 9.582203056413121 37.87758240107836 9.582203056413121 1.7609125905568135 0 1.305462187404089 1.6989700043360187 1.360924374808178 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S{[{M(Oxidation (M))|F}C]|[YS]}VD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}VT{[{M(Oxidation (M))|F}C]|[YS]}VD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}S{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}S{[{M(Oxidation (M))|F}C]|[YS]}VEV{I|L};{NN|[MP]|[D{I|L}]|[EV]}VT{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}VT{[{M(Oxidation (M))|F}C]|[YS]}VEV{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{M(Oxidation (M))|F}[RD]{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{I|L}{M(Oxidation (M))|F}[RD]{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}{[{M(Oxidation (M))|F}C]|[YS]}VD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}S{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}EV 6.7314;6.5764;5.3969;5.3179;5.242;5.163;4.907;4.7521;4.3706;4.3459 -;-;-;-;-;-;-;-;-;- 3593 NaN NaN 410036 NaN 11112 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14186 62.713 NaN 545170 35 0 285920 0.263 -1 0 61 427.30251436250745 852.5904757918149 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14184 428356.9375 0.8872840835379401 -2 0.06502914428710938 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8162 0 0 687.5113722535322 0 687.5113722535322 0 2.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8162 - 25 + NaN NaN 178266.4 NaN 11113 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14187 62.717 NaN 603160 35 0 71304 0.261 + -1 YILPNLMPTF 10 83 612.8215780290823 1223.6286031249645 2 612.8067016601562 MULTI HCD FTMS 0 0 0 14184 18965.982421875 0.3751880077484229 7 -0.19000244140625 3 Oxidation (M) _YILPNLM(Oxidation (M))PTF_ REV__nc|ENSG00000260811|A6NMZ5|OR4C45 6.2057823575117 0.44245551207394906 1 YSQTY{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}] 8 -1 41.235 0 0 3.3699 0 0 113.11761808018817 0 113.11761808018817 0 -4.296831374325905 -4.296831374325905 0 0 0 0 0.8494850021680094 0 YSQTY{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}] 3.3699 - 620 + NaN NaN 181991.9 NaN 11114 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14188 62.72 NaN 923800 35 0 334240 0.264 + 5952 FPDPRGLYHF 10 57 416.87676888716965 1247.608477261709 3 416.8851623535156 MULTI HCD FTMS 0 0 0 14184 28325.796875 0.198424556843676 15 -0.3716239929199219 4 Unmodified _FPDPRGLYHF_ ENSG00000205336|ENST00000562631|ADGRG1;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1 6.1918466704503565 0.44252927588099017 1 H{M(Oxidation (M))|F} 2 8 24.464 0 0 1.9609 0 0 945.4713140310433 0 945.4713140310433 0 12.016675202793719 0 0 0 0.5 0 0 0 + H{M(Oxidation (M))|F} 1.9609 + + 15 + NaN NaN 223310.2 NaN 11115 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14189 62.724 NaN 522650 35 0 77795 0.261 + 13309 KYMDVQFDF 9 66 604.7680796891424 1207.5216064450847 2 604.7681884765625 MULTI HCD FTMS 0 0 0 14184 271218.5 0.051226563014243394 83 -2.2543563842773438 5 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 57.24910588100465 0.021429789259086996 1 DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 60.623 0 0 5.0204 0 0 438.19322402168126 0 438.19322402168126 0 46.56804392152253 0 0 0 1.9247425010840047 0 0.3494850021680094 0 + DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.0204 + + 1140 NaN NaN 183375.7 NaN 11116 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14190 62.727 NaN 134460 35 0 8618.8 0.261 + -1 NYAACKYSGKD 11 46 638.7851877612163 1275.5558225892325 2 638.7855224609375 MULTI HCD FTMS 0 0 0 14184 105724.8046875 1 0 0 6 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 20.41453444215458 0.279209903849948 1 [YN]A{[SA]|[TG]}{I|L} 6 -1 40.819 0 0 3.2001 0 0 0 653.24415201722 653.24415201722 30.361753205006607 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3494850021680094 0.3807196863200844 [YN]A{[SA]|[TG]}{I|L} 3.2001 - 41 NaN NaN 113877.8 NaN 11117 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14191 62.73 NaN 241490 35 0 30062 0.264 + 17632 LYYDRVHVVF 10 53 437.56763457766357 1309.6810743331907 3 437.56805419921875 MULTI HCD FTMS 0 0 0 14184 47196.625 0.5753916383185507 4 -0.11141586303710938 7 Unmodified _LYYDRVHVVF_ ENST00000472127.1_1_3:42672642-42674322:+|nuORF 20.580933911654288 0.31860490502175054 1 {I|L}Y 2 8 37.691 0 0 2.8779 0 0 0 1030.5107797129867 1030.5107797129867 22.11758134947864 0 0 0 0 0.2742275032520141 1.3979400086720375 0 0 + {I|L}Y 2.8779 + + 88 + NaN NaN 120759.1 NaN 11118 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14192 62.734 NaN 303790 35 0 19005 0.261 -1 FLDGNEMTL 9 82 528.2395612683779 1054.4645696035557 2 528.2393798828125 MULTI HCD FTMS 0 0 0 14184 74204.1015625 0.6226864679843521 10 -0.27490997314453125 8 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 17.11289562659939 0.2125047172822487 1 [YV]AMQDDT{I|L} 9 -1 + 46.877 0 0 4.4456 4.4456 86.974 0 0 0 5.7306842758112 41.146387799684874 5.7306842758112 12.26280941356464 0 0 1.6989700043360187 0 0.3054621874040891 [YV]AMQDDT{I|L};[YV]AM[AG]DDT{I|L};[YV]{I|L}{[C(Carbamidomethyl (C))G]|[NC]}DDT{I|L} 4.4456;3.2826;2.0964 -;-;- 520 NaN NaN 132078.1 NaN 11119 3071 14184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14194 62.738 NaN 938390 35 0 116140 0.327 + 34184 YPDINFNRL 9 86 576.2957691552065 1150.5769853772128 2 576.2958984375 MULTI HCD FTMS 0 0 0 14193 457441.90625 0.662775940423727 1 -0.02951812744140625 1 Unmodified _YPDINFNRL_ ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-2|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-5|PARG 137.42381684818497 0.00015474832393368816 1 YPD{I|L}N{M(Oxidation (M))|F}NR{I|L} 9 0 + 109.37 0 0 9.5055 9.5055 93.439 0 0 0 81.89417063682184 8.256886463274284 8.256886463274284 9.208187539523749 0 2.579689690656103 1.6989700043360187 0 1.673877368056628 + + YPD{I|L}N{M(Oxidation (M))|F}NR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}GGR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DVQ{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG{M(Oxidation (M))|F}NR{I|L};Y{I|L}[DP]N{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}N{M(Oxidation (M))|F}NR{I|L};{I|L}Y[DP]N{M(Oxidation (M))|F}NR{I|L} 9.5055;8.7052;8.7052;7.9087;7.3533;6.3113;6.032;5.9463;5.8568;5.5698 +;-;-;-;+;-;-;-;-;- + 897 + NaN NaN 232086.1 NaN 11120 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14195 62.743 NaN 304350 35 0 29709 0.261 + 11113 IYIDRGVVF 9 62 541.3055772164209 1080.5966014996418 2 541.3051147460938 MULTI HCD FTMS 0 0 0 14193 118064.375 0.16293365626288397 10 -0.2779884338378906 2 Unmodified _IYIDRGVVF_ ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 22.736283301280096 0.1639198954644489 1 V{M(Oxidation (M))|F} 2 7 30.969 0 0 2.8659 0 0 816.4494895385075 0 816.4494895385075 0 1.5321251377534395 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.8659 + + 148 + NaN NaN 137416.2 NaN 11121 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14196 62.746 NaN 236900 35 0 36835 0.261 + 26257 SQLLLSNHVHT 11 52 624.8391595911165 NaN 0 624.8244018554688 PEAK HCD FTMS 0 0 0 14193 10181.9736328125 0.31887713533038214 -1 0.029590606689453125 3 Unmodified _SQLLLSNHVHT_ ENST00000252599.8_2_19:17692309-17692558:+|nuORF 7.101721422024254 0.3219746049828039 1 YD 2 11 12.959 0 0 1.0386 0 0 165.10787997087692 801.4394406602111 966.547320631088 0 0 0 0 0 0 0 0.3494850021680094 0 YD 1.0386 - 18 + NaN NaN 139520.1 NaN 11122 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14197 62.75 NaN 200470 35 0 12431 0.261 + 24133 RYAVVLNATW 10 65 596.8276653534533 1191.6407777737065 2 596.8277587890625 MULTI HCD FTMS 0 0 0 14193 56389.53515625 0.05324430111203514 22 -0.5407333374023438 4 Unmodified _RYAVVLNATW_ ENSG00000099194|ENST00000370355|SCD 22.65808497894818 0.29917593477267174 1 NATW 4 6 45.745 0 0 3.8389 0 0 701.4230213849625 0 701.4230213849625 0 38.75569708000178 0 0 0 1 0 0 0.3807196863200844 + NATW 3.8389 + + 219 NaN NaN 117471.3 NaN 11123 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14198 62.753 NaN 146940 35 0 18176 0.264 + -1 YYGDLCQCRN 10 54 450.1851099417628 1347.5335004254885 3 450.18548583984375 MULTI HCD FTMS 0 0 0 14193 26105.560546875 0.09202075462095954 -2 0.059112548828125 5 2 Carbamidomethyl (C) _YYGDLC(Carbamidomethyl (C))QC(Carbamidomethyl (C))RN_ REV__ENSG00000139626|ENST00000267082|ITGB7 2.0860074813731053 0.46426213543441425 1 YYYT 4 -1 22.396 0 0 1.662 0 0 0 754.2622961620697 754.2622961620697 7.791681396005998 0 0 0 0 0 1.6989700043360187 0 0 YYYT 1.662 - 13 NaN NaN 105937.5 NaN 11124 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14199 62.756 NaN 275390 35 0 21817 0.261 + 30576 VNQYEVFL 8 60 506.26094660106827 1010.5073402689366 2 506.2604675292969 MULTI HCD FTMS 0 0 0 14193 49502.25390625 0.08088478849029186 19 -0.46907806396484375 6 Unmodified _VNQYEVFL_ ENST00000510531.5_1_5:6644946-6645183:+|nuORF 14.838274106304384 0.4846187982323419 1 V{I|L}{M(Oxidation (M))|F} 3 6 28.729 0 0 2.843 0 0 633.2758166867085 0 633.2758166867085 0 16.165827977365623 0 0 0 0.8807196863200843 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.843 - 60 + NaN NaN 118227.8 NaN 11125 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14200 62.76 NaN 221340 35 0 15607 0.261 + 19066 NEIEDTFRQF 10 57 433.53821888726145 1297.5928272619844 3 433.8726501464844 MULTI HCD FTMS 0 0 0 14193 10043.7451171875 0.14921752166939853 1 -0.02951812744140625 7 Unmodified _NEIEDTFRQF_ ENSG00000128524|ENST00000249289|ATP6V1F 17.571907917122694 0.346750318923987 1 {M(Oxidation (M))|F} 1 9 21.237 0 0 1.6367 0 0 1132.51407467585 0 1132.51407467585 0 10.026975159433531 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.6367 + + 22 + NaN NaN 106102.5 NaN 11126 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14201 62.763 NaN 211120 35 0 33850 0.261 + 34852 YRSVEVLL 8 53 489.78455712811956 977.5545613230391 2 489.78448486328125 MULTI HCD FTMS 0 0 0 14193 44761.18359375 0.45708849457127626 8 -0.21927261352539062 8 Unmodified _YRSVEVLL_ REV__ENSG00000100288|ENST00000406938|CHKB 7.289230182591677 0.5311777711368266 1 {I|L}{I|L} 2 -1 25.217 0 0 2.5796 0 0 733.3750697006273 0 733.3750697006273 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.5796 + + 25 NaN NaN 124514.2 NaN 11127 3072 14193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14203 62.768 NaN 8587400 35 0 2715300 0.327 + 24711 RYLTVATVF 9 83 535.3056431478079 1068.5967333624158 2 535.30615234375 MULTI HCD FTMS 0 0 0 14202 5615223.5 1 0 0 1 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 51.629811660486645 0.02929079705179888 1 [Y{I|L}]R{[TV]|[{I|L}S]}ATV{M(Oxidation (M))|F} 9 2 + 73.299 0 0 6.8593 6.8593 86.37 0 0 0 3.6675055410631785 6.63303128443836 3.6675055410631785 3.6675055410631785 0 2.4247425010840047 1.2218487496163564 1 0 [Y{I|L}]R{[TV]|[{I|L}S]}ATV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[Y{I|L}]RATV{M(Oxidation (M))|F};[Y{I|L}]RG[{I|L}T]TV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[HV][VP]ATV{M(Oxidation (M))|F};[Y{I|L}]T[RV]ATV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}AVTVPHV{M(Oxidation (M))|F};[NP][KP][VP]ATV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}P{[TV]|[{I|L}S]}V[HV];[Y{I|L}]AAP{[TV]|[{I|L}S]}V[HV] 6.8593;6.5161;6.3914;6.3336;5.769;5.5404;4.3702;2.5831;0.59569 -;-;-;-;-;-;-;-;- 1147 NaN NaN 1004190.4 NaN 11128 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14204 62.772 NaN 2395500 35 0 558170 0.261 + 24875 RYQFLEEAF 9 101 601.7956025436106 1201.576652154021 2 601.7958984375 MULTI HCD FTMS 0 0 0 14202 1615342.625 1 0 0 2 Unmodified _RYQFLEEAF_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 86.33184430468982 0.004622086694044132 1 {[CT]|[{M(Oxidation (M))|F}G]}SR{M(Oxidation (M))|F}{I|L}EEA{M(Oxidation (M))|F} 10 4 + 90.126 0 0 7.5006 7.5006 88.643 0 0 0 5.764837301042718 52.39909385331508 5.764837301042718 6.264100213633768 0 2.5994850021680094 0 0.5484550065040282 0.75 {[CT]|[{M(Oxidation (M))|F}G]}SR{M(Oxidation (M))|F}{I|L}EEA{M(Oxidation (M))|F};[YR]Q{M(Oxidation (M))|F}{I|L}EEA{M(Oxidation (M))|F};[YT]TE{I|L}{M(Oxidation (M))|F}RSW;[YQ]R{M(Oxidation (M))|F}{I|L}EEA{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SR{M(Oxidation (M))|F}{I|L}EAE{M(Oxidation (M))|F};[YR][AG]{M(Oxidation (M))|F}{I|L}EEA{M(Oxidation (M))|F};[YR]Q{M(Oxidation (M))|F}{I|L}EAE{M(Oxidation (M))|F};[YQ]R{M(Oxidation (M))|F}{I|L}EAE{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SR{M(Oxidation (M))|F}{I|L}EA{M(Oxidation (M))|F}E;[HV]EE{I|L}NY{I|L}W 7.5006;6.9793;6.8519;6.7086;6.3281;6.213;5.8067;5.5361;5.2958;5.0583 -;+;-;-;-;-;-;-;-;- + 4426 NaN NaN 454754.2 NaN 11129 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14205 62.776 NaN 1247000 35 0 189340 0.261 + 5152 FFDAELSQM 9 90 552.2393276201218 1102.4641023070435 2 552.239501953125 MULTI HCD FTMS 0 0 0 14202 755744.4375 0.11903390809979139 16 -0.3874359130859375 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 95.584 3.7236 1.266 8.67 8.67 67.838 0 0 0 0 64.21858891296019 0 0 0 3.2302046884880937 0 1.785666875892183 0.6989700043360187 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.67 + + 2341 + NaN NaN 282266.5 NaN 11130 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14206 62.779 NaN 1082500 35 0 71571 0.261 + 4526 EYLENALKL 9 107 546.8004503609103 1091.5863477886205 2 547.2832641601562 MULTI HCD FTMS 0 0 0 14202 97374.3203125 0.13068111379670036 11 -0.28054046630859375 4 Unmodified _EYLENALKL_ ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 26.268140514670165 0.13340543277302316 1 [YT]KD{I|L}DP{I|L}K 9 7 + 58.383 0 0 5.3484 5.3484 82.762 0 0 0 5.482650933829696 2.5397888757737164 2.5397888757737164 1.7216751192405155 0 0.6747425010840047 0.9208187539523752 0.4247425010840047 0 [YT]KD{I|L}DP{I|L}K;[YT]KD{I|L}D{I|L}PK;[YT]KD{I|L}DPK{I|L};[YT]V[SG]{I|L}DP{I|L}K;[YT]V[SG]{I|L}D{I|L}PK;[YT]V[SG]{I|L}DPK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DKAHHK;{[QV]|[N{I|L}]|[RA]|[KV]}TYEDP{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[SG]{I|L}DP{I|L}K;{[QV]|[N{I|L}]|[RA]|[KV]}TYED{I|L}PK 5.3484;5.1907;5.0569;3.6776;3.5198;3.386;2.9903;2.6469;2.6159;2.4892 -;-;-;-;-;-;-;-;-;- 3534 NaN NaN 252852 NaN 11131 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14207 62.783 NaN 602410 35 0 159690 0.261 + 26092 SPHYQEWIL 9 63 586.7903293566119 1171.5661057800237 2 586.7903442382812 MULTI HCD FTMS 0 0 0 14202 436771.34375 0.7941971324156721 2 -0.05230712890625 5 Unmodified _SPHYQEWIL_ ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 21.536976647645854 0.1742816388551942 1 SDEW{I|L}{I|L} 6 4 55.138 0 0 4.7064 0 0 410.1954518048844 0 410.1954518048844 0 48.17532531436136 0 0 0 1.25 0 0.3252574989159953 0 SDEW{I|L}{I|L} 4.7064 - 268 NaN NaN 184242.8 NaN 11132 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14208 62.786 NaN 571270 35 0 57187 0.261 + 27071 SYMGHFDLL 9 89 549.7497688734081 1097.4849848136162 2 549.7503662109375 MULTI HCD FTMS 0 0 0 14202 456314.125 0.044053265922884936 87 -2.3556556701660156 6 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 88.90359156742426 0.00455469703666567 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 47.642 0 0 4.341 4.341 88.665 0 0 0 4.762036441594191 33.50379364601565 4.762036441594191 23.820684442917603 0 1.8494850021680094 0 0.805462187404089 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}E[KA]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}AA[QA];{[{M(Oxidation (M))|F}C]|[YS]}KK[YC(Carbamidomethyl (C))]{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}D[EP]{M(Oxidation (M))|F}AA[KA];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]{I|L}{[{M(Oxidation (M))|F}C]|[YS]} 4.341;2.1705;0.89553;0.67254;0.26111;0.21696;0.21338 +;-;-;-;-;-;- + 338 NaN NaN 166849.6 NaN 11133 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14209 62.789 NaN 659650 35 0 91193 0.261 + 24766 RYPAIIYNI 9 68 561.8191471148502 1121.6237412965004 2 561.8190307617188 MULTI HCD FTMS 0 0 0 14202 210011.328125 0.7649483272267873 -5 0.14698410034179688 7 Unmodified _RYPAIIYNI_ ENSG00000121073|ENST00000240333|SLC35B1;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;nc|ENSG00000121073|P78383-2|SLC35B1 41.8396318013385 0.056899836730939755 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YN{I|L} 9 5 + 59.86 0 0 5.3369 5.3369 85.889 0 0 0 11.372724716820244 41.07509072285026 11.372724716820244 9.018637558036673 0 1.274227503252014 1.5228787452803376 0 0.3807196863200844 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YN{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}NY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YGG{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}GGY{I|L} 5.3369;4.5329;4.516;3.7119 -;-;-;- 262 NaN NaN 179313.1 NaN 11134 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14210 62.793 NaN 102660 35 0 15829 0.261 + 22365 QPQDVDLAL 9 45 499.76140386582676 997.5082547984535 2 499.7613220214844 MULTI HCD FTMS 0 0 0 14202 96028.734375 0.8874175379293939 5 -0.13089370727539062 8 Unmodified _QPQDVDLAL_ ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 8.745405648335112 0.2847203663274469 1 {I|L}DA{I|L} 4 6 27.435 0 0 2.7504 0 0 567.2652566068505 0 567.2652566068505 0 27.43501263708417 0 0 0 1.4247425010840047 0 0 0 {I|L}DA{I|L} 2.7504 - 23 + NaN NaN 104153.7 NaN 11135 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14211 62.796 NaN 324240 35 0 42851 0.261 + -1 NKGSYAGTQRC 11 51 621.2883727869586 1240.562192640717 2 621.2722778320312 MULTI HCD FTMS 0 0 0 14202 26530.88671875 0.30120021414244835 11 -0.28054046630859375 9 Carbamidomethyl (C) _NKGSYAGTQRC(Carbamidomethyl (C))_ REV__ENST00000484590.1_1_2:9539095-9539452:+|nuORF 4.5288652416199255 0.3990586020344083 1 EQ 2 -1 12.474 0 0 1.0055 0 0 299.16417941679146 681.2564791315061 980.4206585482975 0 0 0 0 0 0.5 0 0 0 EQ 1.0055 - 98 + NaN NaN 132226.9 NaN 11136 3073 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14213 62.801 NaN 3477900 35 0 351160 0.327 + 10970 IYDSVKVYF 9 126 567.2967680278759 1132.5789831225518 2 567.2796020507812 MULTI HCD FTMS 0 0 0 14212 224855.234375 0.1263794148687808 12 -0.27972412109375 1 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 59.368380827593164 0.01846506874148156 1 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F} 9 3 + 60.867 0 0 5.3742 5.3742 83.068 0 0 0 2.4019874343821783 2.4019874343821783 2.4019874343821783 2.2628094135646393 0 0.6549471895720984 2 0.8945990182825423 0 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVYV{M(Oxidation (M))|F};{I|L}YDAY{M(Oxidation (M))|F}K[{I|L}T];{I|L}YDS{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[{I|L}T];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SVKVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SVKYV{M(Oxidation (M))|F} 5.3742;5.1744;5.1621;5.1171;4.8212;4.757;4.6214;4.5572;4.2041;4.0043 -;-;-;-;-;-;-;-;-;- 7540 NaN NaN 560001.6 NaN 11137 3074 14212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14214 62.805 NaN 715010 35 0 155420 0.261 + 9344 HPSDIEVDLL 10 83 569.2928560740897 1136.5711592149794 2 570.2958374023438 MULTI HCD FTMS 0 0 0 14212 162738.703125 0.6808452375668317 3 -0.06855010986328125 2 Unmodified _HPSDIEVDLL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 36.12702656103203 0.1790159924230938 1 KDVE[RN]N{M(Oxidation (M))|F} 8 8 41.993 0 0 3.6947 0 0 116.07300355267314 0 116.07300355267314 0 9.060866055724546 0 0 0 1.1549471895720984 0 0.6747425010840047 0.3252574989159953 KDVE[RN]N{M(Oxidation (M))|F} 3.6947 - 2414 + NaN NaN 194088.5 NaN 11138 3074 14212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14215 62.809 NaN 424520 35 0 25144 0.261 + 599 APFKFDMEL 9 82 557.268033382246 1112.521513831292 2 557.26806640625 MULTI HCD FTMS 0 0 0 14212 185469.078125 0.2032623324021983 30 -0.781402587890625 3 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 65.47368725323818 0.010552856507075443 1 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 8 9 53.608 0 0 4.8186 0 0 166.0088453890706 0 166.0088453890706 0 -2.2211214065803375 -2.2211214065803375 0 0 0 0 0.2742275032520141 0 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 4.8186 - 1038 + NaN NaN 154906.1 NaN 11139 3074 14212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14216 62.812 NaN 278950 35 0 20391 0.261 + 18178 MPDLDLHL 8 62 485.2391298169829 968.4637067007658 2 485.239013671875 MULTI HCD FTMS 0 0 0 14212 96609.3515625 0.7012509671549528 -5 0.15692901611328125 4 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 81.86404211737425 0.01600015972391505 1 {M(Oxidation (M))|F}PD{I|L}D{I|L}H{I|L} 8 0 + 52.687 0 0 5.4403 5.4403 88.307 0 0 0 33.223506410013215 8.851518780601921 8.851518780601921 11.211375162600703 0 1.6307196863200843 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}PD{I|L}D{I|L}H{I|L};{M(Oxidation (M))|F}E[VP]D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{I|L}DPE;[H{I|L}]{I|L}[{M(Oxidation (M))|F}V]DPE;[H{I|L}][{M(Oxidation (M))|F}V][VP]EE 5.4403;4.2827;2.6489;1.8454;1.4912 +;-;-;-;- + 156 + NaN NaN 130665.4 NaN 11140 3074 14212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14217 62.815 NaN 558870 35 0 94956 0.261 + 6794 FPRRSFRPNL 10 60 430.5795746910561 1288.7168946733684 3 430.8879089355469 MULTI HCD FTMS 0 0 0 14212 40847.16796875 0.3694423209098374 5 -0.12758636474609375 5 Unmodified _FPRRSFRPNL_ ENSG00000146063|ENST00000315073|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;nc|ENSG00000146063|Q8WV44-4|TRIM41 7.477065608646677 0.43572640772348226 1 PE 2 9 24.024 0 0 1.8642 0 0 1044.6011351286445 0 1044.6011351286445 0 3.0546218740408904 0 0 0 0.3054621874040891 0 0 0 PE 1.8642 - 27 NaN NaN 173318.6 NaN 11141 3074 14212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14219 62.82 NaN 8077200 35 0 479430 0.327 + 35476 YYFEGIKQTF 10 136 648.3188217650031 1294.6230905968062 2 648.3192138671875 MULTI HCD FTMS 0 0 0 14218 5082704.5 0.917149831351368 1 -0.036212921142578125 1 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 192.32093250933514 9.400247209675653E-17 1 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 123.71 0 0 9.5559 9.5559 92.799 0 0 0 21.919076829902167 45.092911211496485 21.919076829902167 9.164539485499262 0 3.004432191740108 2 1.705112052208703 0.3252574989159953 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YEG{I|L}KQT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};{M(Oxidation (M))|F}YYEG{I|L}KQT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]EYG{I|L}KQT{M(Oxidation (M))|F};[NP]D{M(Oxidation (M))|F}EG{I|L}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9.5559;8.848;7.516;7.053;6.9282;6.8702;6.8081;6.5932;6.4924;6.3989 +;-;-;-;-;-;-;-;-;- + 42970 NaN NaN 1319503.9 NaN 11142 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14220 62.825 NaN 3444900 35 0 310750 0.262 + 20016 NYIGLINRI 9 110 538.3164166178896 1074.618280302579 2 538.3160400390625 MULTI HCD FTMS 0 0 0 14218 919750.8125 0.1444578097576747 11 -0.2602081298828125 2 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 166.44778350782605 5.759113011535275E-09 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 96.261 0 0 8.9577 8.9577 92.267 0 0 0 9.184240242164421 9.184240242164421 9.184240242164421 9.184240242164421 0 2.610924374808178 1.5228787452803376 0 2.189265307492605 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};NY{I|L}G{I|L}[RN]{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}NR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}GGR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}[RN]{I|L}{I|L};[MT]{I|L}{I|L}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.9577;8.1031;8.1008;7.2481;7.2462;7.0491;4.66;3.5639;3.2756;2.4997 +;+;-;-;-;-;-;-;-;- + 2041 NaN NaN 611176.6 NaN 11143 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14221 62.828 NaN 1488400 35 0 230550 0.261 + 18275 MPDVDLHL 8 81 470.23380515187733 938.4530573705547 2 470.2338562011719 MULTI HCD FTMS 0 0 0 14218 1019541.5 0.7775060896286187 -3 0.08182525634765625 3 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 97.07464715276575 0.03528778528112001 1 MPDVD{I|L}H{I|L} 8 0 + 91.151 0 0 9.7129 9.7129 97.508 0 0 0 40.79689690656103 8.979400086720375 8.979400086720375 30.33809673312028 0 2.4291746928241125 1.5228787452803376 0.6505149978319906 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DV]PMD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DV]PDM{I|L}H{I|L};[DP]VMD{I|L}H{I|L};MP[KT][QT]S{M(Oxidation (M))|F};[DP]VDM{I|L}H{I|L};[DV]PD{I|L}MH{I|L};[DV]PD{I|L}HM{I|L} 9.7129;6.4802;5.7774;5.4675;5.2446;4.8273;4.3787;4.2945;3.7237;3.4588 +;+;-;-;-;-;-;-;-;- + 656 + NaN NaN 322626.9 NaN 11144 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14222 62.832 NaN 1130500 35 0 88596 0.261 + 5893 FPDKVAIQL 9 100 515.8004476549919 1029.5863423767837 2 515.8003540039062 MULTI HCD FTMS 0 0 0 14218 613212.25 0.7414340468097972 -4 0.11141586303710938 4 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 103.82355648334675 0.003950725192926219 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 78.943 0 0 7.6674 7.6674 87.423 0 0 0 15.44550431060312 15.44550431060312 15.44550431060312 3.0102999566398125 0 2.144599018282542 1.3010299956639813 0.4247425010840047 0.2614393726401688 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAGA{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAG{I|L}A{I|L};{M(Oxidation (M))|F}PDKVA{I|L}Q{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVQA{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}GA{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L} 7.6674;7.375;6.9737;6.8466;6.4551;6.1673;5.8998;5.8536;5.6074;5.4085 +;-;-;-;-;+;-;-;-;- + 2392 NaN NaN 256757.8 NaN 11145 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14223 62.835 NaN 615650 35 0 57791 0.261 + 6717 FPQDRVFML 9 89 584.7944593895264 1167.5743658458528 2 584.7950439453125 MULTI HCD FTMS 0 0 0 14218 340378.09375 0.5817623435900329 -30 0.8157005310058594 5 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 80.6760300276096 0.005633624786464751 1 {I|L}MQDRV{M(Oxidation (M))|F} 7 4 89.62 0 0 7.6757 0 0 0 275.10712610416255 275.10712610416255 68.65077175326432 0 0 0 0 2.7302046884880937 2 0.7742275032520141 0.6139829889124311 {I|L}MQDRV{M(Oxidation (M))|F} 7.6757 - 1697 + NaN NaN 187384.4 NaN 11146 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14224 62.838 NaN 336430 35 0 50723 0.261 + 8323 GYASRFIVI 9 62 513.2926510143773 1024.5707490955544 2 513.2929077148438 MULTI HCD FTMS 0 0 0 14218 172673.046875 0.46748807682945825 4 -0.10807037353515625 6 Unmodified _GYASRFIVI_ ENSG00000153574|ENST00000283646|RPIA 36.506200033944 0.08138327636155518 1 [YG]AV[SG]{M(Oxidation (M))|F}{I|L}V 9 3 50.396 0 0 4.9188 0 0 0 128.071941046754 128.071941046754 34.82325282109926 0 0 0 0 1.4247425010840047 1.6989700043360187 0.3807196863200844 0 [YG]AV[SG]{M(Oxidation (M))|F}{I|L}V 4.9188 - 212 NaN NaN 129551.9 NaN 11147 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14225 62.842 NaN 479740 35 0 41505 0.261 + 284 AFMKGVFTF 9 76 532.2678518541809 1062.5211507751617 2 532.2681884765625 MULTI HCD FTMS 0 0 0 14218 234290.40625 0.5449315064510478 -3 0.08182525634765625 7 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 85.64151623876279 0.004640175941193596 1 A{M(Oxidation (M))|F}{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T 7 3 62.572 0 0 5.889 0 0 0 162.05600916080314 162.05600916080314 43.1084121911062 0 0 0 0 2.473197507588033 0 1.0629529932484498 0 A{M(Oxidation (M))|F}{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T 5.889 - 816 + NaN NaN 156838.8 NaN 11148 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14226 62.845 NaN 191320 35 0 25829 0.261 + 12932 KYGQGFYLI 9 66 544.7924425357446 1087.5703321382891 2 544.7926635742188 MULTI HCD FTMS 0 0 0 14218 167552.09375 1 0 0 8 Unmodified _KYGQGFYLI_ ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-2|LLGL2 20.453626601364224 0.18364154288633264 1 KY{I|L}{I|L} 4 5 37.735 0 0 3.4697 0 0 552.2339955060562 0 552.2339955060562 0 13.55388478663194 0 0 0 0.8807196863200843 0 0 0 KY{I|L}{I|L} 3.4697 - 65 NaN NaN 108110.4 NaN 11149 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14227 62.848 NaN 247020 35 0 29476 0.261 + 11160 IYISTLKTEF 10 52 607.8368500740975 1213.6591472149948 2 607.8372802734375 MULTI HCD FTMS 0 0 0 14218 168211.984375 0.7712539663935815 -4 0.11141586303710938 9 Unmodified _IYISTLKTEF_ ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 70.92866715596459 0.016484948974345597 1 [Y{I|L}]{I|L}ST{I|L}KTE{M(Oxidation (M))|F} 10 0 + 91.324 0 0 7.5247 7.5247 94.338 0 0 0 12.805621271586318 81.85972531752853 12.805621271586318 25.912968196660273 0 2.9247425010840047 1.6989700043360187 0.7742275032520141 0 + + [Y{I|L}]{I|L}ST{I|L}KTE{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{[MG]|[TS]}KTE{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HK][HK]E{M(Oxidation (M))|F} 7.5247;5.3895;3.554 +;-;- + 117 NaN NaN 131880 NaN 11150 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14228 62.852 NaN 512230 35 0 72236 0.263 + 19416 NPISTVTEL 9 81 487.2636999750872 972.5128470169744 2 487.2636413574219 MULTI HCD FTMS 0 0 0 14218 118526.2890625 0.22071040709710546 -4 0.11141586303710938 10 Unmodified _NPISTVTEL_ ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4 57.72198328787511 0.020768266150574023 1 {[TV]|[{I|L}S]}[NP]{[TV]|[{I|L}S]}TE{I|L} 9 4 + 52.412 0 0 5.3893 5.3893 88.046 0 0 0 4.857405846330778 38.701746761134714 4.857405846330778 10.522562268522577 0 1.1747425010840047 1.5228787452803376 1.2302046884880937 0 {[TV]|[{I|L}S]}[NP]{[TV]|[{I|L}S]}TE{I|L};{[QN]|[E{I|L}]|[KN]}G[Q{I|L}]ATE{I|L};[DP][KA]{[TV]|[{I|L}S]}TE{I|L};[KG][EP]{[TV]|[{I|L}S]}TE{I|L} 5.3893;4.3073;3.5609;3.3636 -;-;-;- 185 NaN NaN 165773.8 NaN 11151 3075 14218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14230 62.856 NaN 3038300 35 0 300850 0.326 + 35921 YYTKGFALL 9 106 538.2949111235207 1074.5752693138413 2 538.2951049804688 MULTI HCD FTMS 0 0 0 14229 814145.625 0.7410161323077921 2 -0.0423736572265625 1 Unmodified _YYTKGFALL_ ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 82.5293158979368 0.005033931517079822 1 [YN]{I|L}G{I|L}{I|L}NR 8 7 53.621 0 0 4.99 0 0 0 128.0218198590392 128.0218198590392 4.441811241770125 0 0 0 0 0 1.6989700043360187 0 2.1839679827251204 [YN]{I|L}G{I|L}{I|L}NR 4.99 - 2323 NaN NaN 541307.3 NaN 11152 3076 14229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14231 62.861 NaN 435610 35 0 49687 0.261 + 26776 SYGKINILL 9 71 510.8080156168902 1019.6014783005804 2 510.80810546875 MULTI HCD FTMS 0 0 0 14229 228182.453125 0.4909692473110905 3 -0.07185745239257812 2 Unmodified _SYGKINILL_ ENSG00000112249|ENST00000369162|ASCC3 41.95555342248728 0.056367691549927025 1 [KG]YS{I|L}N{I|L}{I|L}{I|L} 9 4 + 66.406 0 0 6.5129 6.5129 88.867 0 0 0 5.6424927368725974 38.90978057358332 5.6424927368725974 9.208187539523749 0 0.7742275032520141 0 0 0.7059771852360797 [KG]YS{I|L}N{I|L}{I|L}{I|L};[KG]YS{I|L}GG{I|L}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KG]{I|L}N{I|L}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KG]{I|L}GG{I|L}{I|L}{I|L};[KG]Y[KG]E{I|L}{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}SY[KG]{I|L};{I|L}{I|L}N{I|L}SY[KG]{I|L};{I|L}{I|L}[HD][PS]{I|L}{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}YT[{I|L}V][KG]{I|L};{I|L}{I|L}GG{I|L}SY[KG]{I|L} 6.5129;5.6098;5.213;4.3099;3.7407;1.8627;1.7556;1.1591;1.0044;0.8525 -;-;+;-;-;-;-;-;-;- + 545 NaN NaN 154425.7 NaN 11153 3076 14229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14232 62.864 NaN 541920 35 0 55357 0.261 + 13310 KYMDVQFDF 9 69 604.7680796891424 1207.5216064450847 2 604.7680053710938 MULTI HCD FTMS 0 0 0 14229 238229.484375 0.04499574215323309 88 -2.385101318359375 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 53.31671820480216 0.026930930319421505 1 DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 56.503 0 0 4.6792 0 0 438.19420058418126 0 438.19420058418126 0 42.39986682528553 0 0 0 1.8494850021680094 0 0 0.3807196863200844 + DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6792 + + 836 NaN NaN 168235.3 NaN 11154 3076 14229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14234 62.869 NaN 790400 35 0 82884 0.327 + 34185 YPDINFNRL 9 90 576.2957691552065 1150.5769853772128 2 576.2960205078125 MULTI HCD FTMS 0 0 0 14233 414788.5625 0.6009765957859121 6 -0.16643142700195312 1 Unmodified _YPDINFNRL_ ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-2|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-5|PARG 103.41943736471063 0.004016698775839292 1 YPD{I|L}N{M(Oxidation (M))|F}NR{I|L} 9 0 + 102.98 0 0 8.9504 8.9504 92.897 0 0 0 80.03973386459987 7.147642715192504 7.147642715192504 9.208187539523749 0 2.5356668758921828 2 0 1 + + YPD{I|L}N{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}NR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}GGR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}N{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG{M(Oxidation (M))|F}NR{I|L};[DP]{I|L}YN{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}GG{M(Oxidation (M))|F}NR{I|L};[DP]{I|L}YGG{M(Oxidation (M))|F}NR{I|L} 8.9504;8.1501;8.1501;7.3536;7.11;6.3052;6.027;5.3052;5.2222;4.2222 +;-;-;-;+;-;-;-;-;- + 873 + NaN NaN 210358 NaN 11155 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14235 62.874 NaN 584900 35 0 303000 0.263 -1 0 64 427.30251436250745 852.5904757918149 2 427.3026123046875 MULTI HCD FTMS 0 0 0 14233 304676.75 0.6310971230600604 4 -0.11445999145507812 2 NaN NaN 1 G{M(Oxidation (M))|F} 2 -1 17.474 0 0 2.0495 0 0 630.4899946900556 0 630.4899946900556 0 0.4845500650402812 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 2.0495 - 27 + NaN NaN 188253.7 NaN 11156 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14236 62.877 NaN 294180 35 0 32146 0.261 + 11551 IYSQTYFRF 9 61 612.8062523194469 1223.5979517056937 2 612.8062744140625 MULTI HCD FTMS 0 0 0 14233 226441.21875 0.11714454150967896 20 -0.4916648864746094 3 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 84.5221896805406 0.004669506596793478 1 {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 97.54 0 0 7.9715 7.9715 91.366 0 0 0 78.07570277971656 8.384767769392738 8.384767769392738 9.208187539523749 0 2.168826521534556 2 0.4247425010840047 0 + + {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}YS[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]S{[SA]|[TG]}AY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}SYQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}SY[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 7.9715;7.219;6.2167;5.793;5.1507;4.3982 +;-;+;-;-;- + 282 + NaN NaN 133497.6 NaN 11157 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14237 62.881 NaN 505250 35 0 172890 0.264 + 5953 FPDPRGLYHF 10 50 416.87676888716965 1247.608477261709 3 416.8851013183594 MULTI HCD FTMS 0 0 0 14233 14071.1787109375 0.09856977412876196 21 -0.5244789123535156 4 Unmodified _FPDPRGLYHF_ ENSG00000205336|ENST00000562631|ADGRG1;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1 3.5870582119611467 0.4563168352879256 1 H{M(Oxidation (M))|F} 2 8 22.474 0 0 1.8014 0 0 945.4709173025277 0 945.4709173025277 0 7.769250191953672 0 0 0 0.5 0 0 0 + H{M(Oxidation (M))|F} 1.8014 + + 10 + NaN NaN 155865.2 NaN 11158 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14238 62.884 NaN 516090 35 0 37453 0.261 + 4659 EYNNIFHTF 9 83 592.7715060316092 1183.5284591300183 2 592.7718505859375 MULTI HCD FTMS 0 0 0 14233 75659.3125 0.4362612286319935 -2 0.04903411865234375 5 Unmodified _EYNNIFHTF_ ENST00000545363.6_1_12:9808558-9809281:+|nuORF 79.59630418116434 0.005983006570063981 1 MWT[KS]{M(Oxidation (M))|F}H 7 7 48.39 0 0 4.0886 0 0 0 263.10346399478755 263.10346399478755 24.84591650641846 0 0 0 0 1.0114393726401687 0 0.805462187404089 0 MWT[KS]{M(Oxidation (M))|F}H 4.0886 - 620 + NaN NaN 180044.7 NaN 11159 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14239 62.887 NaN 120730 35 0 7674.7 0.261 + -1 NYAACKYSGKD 11 42 638.7851877612163 1275.5558225892325 2 638.7853393554688 MULTI HCD FTMS 0 0 0 14233 51696.2265625 0.4889697050309342 6 -0.16643142700195312 6 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 15.248480904072842 0.3242218977034194 1 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY 7 -1 49.965 0 0 3.9171 0 0 0 428.19440637760005 428.19440637760005 42.97569463554474 0 0 0 0 1 1.6989700043360187 1 0 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY 3.9171 - 30 + NaN NaN 104473 NaN 11160 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14240 62.891 NaN 308220 35 0 18497 0.261 -1 IILCHYEMS 9 73 583.2737126597216 1164.532872386243 2 583.2722778320312 MULTI HCD FTMS 0 0 0 14233 55112.33203125 0.15701903536633954 -5 0.130859375 7 Carbamidomethyl (C) _IILC(Carbamidomethyl (C))HYEMS_ ENST00000476618.5_1_2:173940647-174074648:+|nuORF 11.640296217721598 0.25978676193971967 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 21.923 0 0 1.8826 0 0 0 796.3877057204805 796.3877057204805 3.9646872391696064 0 0 0 0 0.6861818737241735 1.3979400086720375 0 0 {[YD]|[{M(Oxidation (M))|F}M]}S 1.8826 - 182 NaN NaN 137557.2 NaN 11161 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14241 62.894 NaN 141270 35 0 13274 0.264 + 12653 KWFFQKLRF 9 50 433.9165718499505 1298.7278861500515 3 433.9169921875 MULTI HCD FTMS 0 0 0 14233 26461.724609375 0.4775983832922527 -1 0.012821197509765625 8 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 4.897010918128616 0.31389406404703984 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.1923 0 0 1133.6490267523936 0 1133.6490267523936 0 11.505149978319906 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1923 + + 7 + NaN NaN 101828.2 NaN 11162 3077 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14243 62.899 NaN 1502200 35 0 196590 0.327 + 9345 HPSDIEVDLL 10 114 569.2928560740897 1136.5711592149794 2 569.7818603515625 MULTI HCD FTMS 0 0 0 14242 228142.8125 0.3487003614832918 7 -0.16893386840820312 1 Unmodified _HPSDIEVDLL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 65.23502041540118 0.023231415588018726 1 [YT]{[RE]|[WV]}EVD{I|L}{I|L} 9 5 + 58.457 0 0 5.1433 5.1433 85.117 0 0 0 1.1131029263325587 23.283409326844257 1.1131029263325587 7.9369094600919965 0 1.829689690656103 1.0969100130080565 0.809894379144197 0 [YT]{[RE]|[WV]}EVD{I|L}{I|L};[YK]GVT[DN]D{I|L}{I|L};[YG]KVT[DN]D{I|L}{I|L};[YT][VG]K[DN]D{I|L}{I|L};[YK]G[NS]EVD{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}Y[RP]VD{I|L}{I|L};[YK]EK[DN]D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}D]|MM}T{[DS]|[MA]|[CV]|TT}{I|L}{I|L};[YG]K[NS]EVD{I|L}{I|L};[YT]{[RE]|[WV]}EVEV{I|L} 5.1433;4.445;4.2654;4.1867;4.0678;4.0419;3.9617;3.9028;3.8882;3.6783 -;-;-;-;-;-;-;-;-;- 6863 NaN NaN 318305.4 NaN 11163 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14244 62.903 NaN 375230 35 0 32025 0.261 -1 APFKFDMEL 9 73 557.268033382246 1112.521513831292 2 557.2681274414062 MULTI HCD FTMS 0 0 0 14242 140927.453125 0.1544475397800976 34 -0.9088630676269531 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 26.020703789607367 0.13554323117744113 1 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 8 -1 60.426 0 0 5.4314 0 0 166.0089362943724 0 166.0089362943724 0 22.533284873352315 0 0 0 0 0 0.6549471895720984 0 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 5.4314 - 680 + NaN NaN 144411.9 NaN 11164 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14245 62.907 NaN 199550 35 0 25227 0.262 + -1 YYGDLCQCRN 10 72 450.1851099417628 1347.5335004254885 3 450.18487548828125 MULTI HCD FTMS 0 0 0 14242 139200.875 0.49067590555649737 4 -0.11757659912109375 3 2 Carbamidomethyl (C) _YYGDLC(Carbamidomethyl (C))QC(Carbamidomethyl (C))RN_ REV__ENSG00000139626|ENST00000267082|ITGB7 1.7422754331352037 0.46608156381052757 1 {I|L} 1 -1 14.604 0 0 1.0838 0 0 1216.4390770629868 0 1216.4390770629868 0 1.1092437480817807 0 0 0 0 0 0 0 {I|L} 1.0838 + + 13 + NaN NaN 116600.4 NaN 11165 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14246 62.91 NaN 345450 35 0 94981 0.261 -1 0 63 525.2875456176753 524.2802691510752 1 527.2908935546875 MULTI HCD FTMS 0 0 0 14242 154645.15625 0.22489490214983865 -6 0.16041183471679688 4 NaN NaN 1 AAP{M(Oxidation (M))|F} 4 -1 19.385 0 0 3.6975 0 0 120.07380212825895 0 120.07380212825895 0 16.286531417686096 0 0 0 0 0 0 0 AAP{M(Oxidation (M))|F} 3.6975 - 50 + NaN NaN 137263.3 NaN 11166 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14247 62.913 NaN 256320 35 0 25531 0.262 + 35784 YYMQRMWEI 9 56 440.5339720746664 1318.5800868241993 3 440.53350830078125 MULTI HCD FTMS 0 0 0 14242 42899.80078125 0.4729127606600071 3 -0.08490753173828125 5 Unmodified _YYMQRMWEI_ REV__ENSG00000166323|ENST00000393084|C11orf65;REV__ENST00000526725.1_1_11:108211081-108276220:-|nuORF;REV__nc|ENSG00000166323|Q8NCR3-2|MFI 8.745405648335112 0.2847203663274469 1 {I|L} 1 -1 15.485 0 0 1.1743 0 0 1187.485724496854 0 1187.485724496854 0 0.5900001671064068 0 0 0 0 0 0 0 {I|L} 1.1743 + + 51 + NaN NaN 127257.3 NaN 11167 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14248 62.917 NaN 185060 35 0 51654 0.261 + 13963 KYRPLFDYF 9 48 624.8243037855011 1247.6340546378021 2 624.8242797851562 MULTI HCD FTMS 0 0 0 14242 57939.4140625 0.13652904198585902 15 -0.34751129150390625 6 Unmodified _KYRPLFDYF_ ENSG00000196305|ENST00000443024|IARS1 21.536976647645854 0.1742816388551942 1 KY{M(Oxidation (M))|F} 3 6 31.555 0 0 2.5292 0 0 791.40336806465 0 791.40336806465 0 19.27440017027358 0 0 0 0.5 0 0 0.4247425010840047 KY{M(Oxidation (M))|F} 2.5292 - 22 NaN NaN 108297.4 NaN 11168 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14249 62.92 NaN 164300 35 0 9140.2 0.263 + 30577 VNQYEVFL 8 56 506.26094660106827 1010.5073402689366 2 506.2611389160156 MULTI HCD FTMS 0 0 0 14242 33611.39453125 0.054919732395875026 25 -0.6471900939941406 7 Unmodified _VNQYEVFL_ ENST00000510531.5_1_5:6644946-6645183:+|nuORF 7.289230182591677 0.5311777711368266 1 {M(Oxidation (M))|F} 1 7 11.237 0 0 1.112 0 0 131.14764121814545 729.321532489625 860.4691737077706 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.112 + + 7 + NaN NaN 109020.7 NaN 11169 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14250 62.923 NaN 308550 35 0 40243 0.261 + 35060 YTNTPPVI 8 53 452.7422415111567 903.4699300891134 2 452.766357421875 MULTI HCD FTMS 0 0 0 14242 32386.6328125 0.8531066086663761 2 -0.05886077880859375 8 Unmodified _YTNTPPVI_ ENSG00000004897|ENST00000066544|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;nc|ENSG00000004897|P30260-2|CDC27 7.289230182591677 0.5311777711368266 1 A{M(Oxidation (M))|F} 2 8 15.573 0 0 1.7237 0 0 667.3547089971197 0 667.3547089971197 0 1.593793813122062 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.7237 - 26 + NaN NaN 136338.8 NaN 11170 3078 14242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14252 62.928 NaN 3041400 35 0 933990 0.327 + 24712 RYLTVATVF 9 71 535.3056431478079 1068.5967333624158 2 535.3057250976562 MULTI HCD FTMS 0 0 0 14251 1706061.5 0.3038278885960639 6 -0.1394500732421875 1 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 51.629811660486645 0.02929079705179888 1 EATV{M(Oxidation (M))|F} 5 5 60.433 0 0 5.6554 0 0 503.30809218574376 0 503.30809218574376 0 38.11365663899274 0 0 0 2 0 1 0 EATV{M(Oxidation (M))|F} 5.6554 - 515 NaN NaN 535090.6 NaN 11171 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14253 62.933 NaN 1810500 35 0 131580 0.261 + 6530 FPITSDATKL 10 116 546.8004503609103 1091.5863477886205 2 547.2836303710938 MULTI HCD FTMS 0 0 0 14251 47746.5625 0.06407822870998554 16 -0.37691497802734375 2 Unmodified _FPITSDATKL_ ENSG00000174776|ENST00000682715|WDR49 25.399314129420986 0.2735354021946395 1 [YT]KD{I|L}D{I|L}PK 9 8 + 59.007 0 0 5.4057 5.4057 84.145 0 0 0 2.6541826021754034 -1.2510383006518069 -1.2510383006518069 4.498803669497512 0 0.2614393726401688 0.9208187539523752 0.3252574989159953 0.2742275032520141 [YT]KD{I|L}D{I|L}PK;[YT]KD{I|L}DP{I|L}K;[YT]KD{I|L}DPK{I|L};[KT]YD{I|L}D{I|L}PK;[YT]V[SG]{I|L}D{I|L}PK;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[SG]{I|L}D{I|L}PK;[KT]YD{I|L}DP{I|L}K;[YT]V[SG]{I|L}DP{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[SG]{I|L}DP{I|L}K;[KT]YD{I|L}DPK{I|L} 5.4057;4.9935;4.6294;4.1267;3.8738;3.761;3.7145;3.7129;3.6001;3.3504 -;-;-;-;-;-;-;-;-;- 4961 NaN NaN 356212.7 NaN 11172 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14254 62.936 NaN 1877000 35 0 310530 0.261 + 25705 SIWPNSPEAPT 11 109 599.7908778922598 1197.5672028513195 2 599.8090209960938 MULTI HCD FTMS 0 0 0 14251 106342.640625 0.5645020394777331 1 -0.029376983642578125 3 Unmodified _SIWPNSPEAPT_ REV__ENSG00000182732|ENST00000553525|RGS6;REV__nc|ENSG00000182732|P49758-12|RGS6;REV__nc|ENSG00000182732|P49758-13|RGS6;REV__nc|ENSG00000182732|P49758-14|RGS6;REV__nc|ENSG00000182732|P49758-15|RGS6;REV__nc|ENSG00000182732|P49758-16|RGS6;REV__nc|ENSG00000182732|P49758-2|RGS6;REV__nc|ENSG00000182732|P49758-5|RGS6;REV__nc|ENSG00000182732|P49758-8|RGS6;REV__nc|ENSG00000182732|P49758|RGS6 16.149105407346934 0.31637472687818013 1 YY{I|L}ND{I|L}ER 8 -1 63.793 0 0 5.3269 0 0 0 128.03417209565796 128.03417209565796 3.323916163414573 0 0 0 0 0 2 0.899649864804614 1.8243923658886185 YY{I|L}ND{I|L}ER 5.3269 - 3709 NaN NaN 375504.1 NaN 11173 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14255 62.94 NaN 550140 35 0 122110 0.261 + 24876 RYQFLEEAF 9 68 601.7956025436106 1201.576652154021 2 601.7955322265625 MULTI HCD FTMS 0 0 0 14251 445631.15625 0.27587407733390307 6 -0.1394500732421875 4 Unmodified _RYQFLEEAF_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 51.629811660486645 0.02929079705179888 1 EEA{M(Oxidation (M))|F} 4 5 46.938 0 0 3.9064 0 0 707.3755196190009 0 707.3755196190009 0 33.605384569831 0 0 0 1.5 0 0 0 + EEA{M(Oxidation (M))|F} 3.9064 + + 79 NaN NaN 165148.9 NaN 11174 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14256 62.943 NaN 1048500 35 0 110270 0.261 + 5153 FFDAELSQM 9 96 552.2393276201218 1102.4641023070435 2 552.2394409179688 MULTI HCD FTMS 0 0 0 14251 435515 0.06859600933031101 22 -0.5638999938964844 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 157.7952019732125 5.857147217999733E-07 1 DAE{I|L}SQ{M(Oxidation (M))|F} 7 2 75.504 0 0 6.8487 0 0 294.12720152754974 0 294.12720152754974 0 44.56083711839304 0 0 0 2.579689690656103 0 1.316901560044258 0.6139829889124311 + DAE{I|L}SQ{M(Oxidation (M))|F} 6.8487 + + 1319 + NaN NaN 243276.8 NaN 11175 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14257 62.946 NaN 700370 35 0 63133 0.261 + 27072 SYMGHFDLL 9 104 549.7497688734081 1097.4849848136162 2 549.7501831054688 MULTI HCD FTMS 0 0 0 14251 374526.21875 0.036157335935385136 93 -2.5321311950683594 6 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 96.28474662873226 0.004361282420133734 1 SY{M(Oxidation (M))|F}D 4 5 55.974 0 0 5.1002 0 0 0 582.2963961236936 582.2963961236936 17.21340305007878 0 0 0 0 0.6421590589602533 2 0.7614393726401688 0 SY{M(Oxidation (M))|F}D 5.1002 - 815 + NaN NaN 207635.8 NaN 11176 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14258 62.95 NaN 647090 35 0 40239 0.261 + 25202 SANTRAIYLN 10 80 561.80097217974 NaN 0 561.8192138671875 PEAK HCD FTMS 0 0 0 14251 58010.734375 1 0 0 7 Unmodified _SANTRAIYLN_ REV__ENSG00000184144|ENST00000331830|CNTN2;REV__ENST00000530117.5_1_1:205027631-205031234:+|nuORF 21.536976647645854 0.26818477760186155 1 NE{M(Oxidation (M))|F}{I|L}P{I|L} 6 -1 21.86 0 0 1.949 0 0 131.06114327286917 274.08283411197505 405.1439773848442 0 0 0 0 0 0.6237125054200234 0 0.3494850021680094 0.4247425010840047 NE{M(Oxidation (M))|F}{I|L}P{I|L} 1.949 - 177 + NaN NaN 175683.5 NaN 11177 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14259 62.953 NaN 339820 35 0 86259 0.263 + 1800 CNPHCPHC 8 60 455.66015915616333 909.3057653791267 2 455.6604309082031 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _CNPHCPHC_ REV__ENSG00000178568|ENST00000342788|ERBB4;REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF;REV__nc|ENSG00000178568|Q15303-2|ERBB4;REV__nc|ENSG00000178568|Q15303-3|ERBB4;REV__nc|ENSG00000178568|Q15303-4|ERBB4 0.6903765706972694 0.5409681170271811 1 Y{M(Oxidation (M))|F} 2 -1 17.474 0 0 1.9217 0 0 581.1625291504142 0 581.1625291504142 0 10.484550065040281 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.9217 - 11 + NaN NaN 147988.4 NaN 11178 3079 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14261 62.958 NaN 13033000 35 0 2587100 0.327 + 29072 TYGEIFEKF 9 123 567.2791460627044 1132.5437391922087 2 567.27978515625 MULTI HCD FTMS 0 0 0 14260 12474236 0.5059281375001815 -4 0.10123443603515625 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 148.26817274609934 1.0657023776783114E-05 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 113.24 0 0 9.9985 9.9985 95.351 0 0 0 12.132186136930386 12.132186136930386 12.132186136930386 12.132186136930386 0 2.6237125054200234 2 1.2031198197908841 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}K;TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}[SG]{I|L}{M(Oxidation (M))|F} 9.9985;8.9273;7.81;7.3134;7.0987;6.9991;6.8852;6.836;6.7531;6.716 +;-;-;-;-;-;-;-;-;- + 11942 + NaN NaN 633681.1 NaN 11179 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14262 62.962 NaN 3533800 35 0 209760 0.261 + 35477 YYFEGIKQTF 10 125 648.3188217650031 1294.6230905968062 2 648.3192138671875 MULTI HCD FTMS 0 0 0 14260 1665624.5 0.30055401199690174 6 -0.12276077270507812 2 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 163.68669969883206 7.320398983075742E-11 1 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 110.64 0 0 8.5462 8.5462 91.523 0 0 0 23.177418734074564 42.70299346378384 23.177418734074564 9.164539485499247 0 2.6989700043360187 2 1.329689690656103 0 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YEG{I|L}KQT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K{[NV]|[RG]}Y;{M(Oxidation (M))|F}YYEG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[{I|L}V]NQT{M(Oxidation (M))|F} 8.5462;7.8383;6.9024;6.2046;6.1945;6.0752;5.9185;5.7702;5.7345;5.5934 +;-;-;-;-;-;-;-;-;- + 26241 NaN NaN 629053.1 NaN 11180 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14263 62.966 NaN 761120 35 0 137340 0.261 -1 QRCTFQEDC 9 89 593.7349066565118 1185.4552603798236 2 593.7350463867188 MULTI HCD FTMS 0 0 0 14260 169041.359375 0.44578075903130027 -4 0.10123443603515625 3 Carbamidomethyl (C) _QRCTFQEDC(Carbamidomethyl (C))_ PLXNC1|p.G485E|1|0.19|ENSG00000136040|chr12:94209604-94209604|G/A|missense_variant 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46265 0 0 422.1191530573611 613.2458590143186 1035.3650120716798 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46265 + + 159 + NaN NaN 196483.1 NaN 11181 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14264 62.969 NaN 633170 35 0 130100 0.261 + 29576 VADPYVVIM 9 58 511.76500996776963 1021.5154670023393 2 511.76483154296875 MULTI HCD FTMS 0 0 0 14260 204769.09375 0.28786221261052797 -6 0.15696334838867188 4 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 57.47134341890925 0.0211188941628804 1 {[VA]|[{I|L}G]}D{I|L}{M(Oxidation (M))|F}VV{I|L}{M(Oxidation (M))|F} 9 2 {[VA]|[{I|L}G]} + + 59.711 2.2185 1.3042 5.8453 5.8453 63.06 0 0 0 0 52.721157291141836 0 0 0 2.75 0 0 0 {[VA]|[{I|L}G]}D{I|L}{M(Oxidation (M))|F}VV{I|L}{M(Oxidation (M))|F} 5.8453 - 122 + NaN NaN 174182.8 NaN 11182 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14265 62.972 NaN 424140 35 0 48652 0.261 + 26093 SPHYQEWIL 9 65 586.7903293566119 1171.5661057800237 2 586.7907104492188 MULTI HCD FTMS 0 0 0 14260 78635.171875 0.14298517726447915 9 -0.19768142700195312 5 Unmodified _SPHYQEWIL_ ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 12.240655878213236 0.2545997876781172 1 EW{I|L}{I|L} 4 5 29.157 0 0 2.4887 0 0 612.2636585919937 0 612.2636585919937 0 21.197887582883936 0 0 0 0.5 0 0 0 + EW{I|L}{I|L} 2.4887 + + 46 NaN NaN 154188.7 NaN 11183 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14266 62.976 NaN 302370 35 0 18452 0.261 -1 APFKFDMEL 9 84 557.268033382246 1112.521513831292 2 557.2673950195312 MULTI HCD FTMS 0 0 0 14260 114825.265625 0.1258411997600447 36 -0.9506950378417969 6 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 38.61474834105838 0.07170385841135779 1 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 8 -1 56.491 0 0 5.0777 0 0 166.00996646143102 0 166.00996646143102 0 25.728502661257977 0 0 0 0 0 0.2614393726401688 0 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 5.0777 - 517 + NaN NaN 132330.2 NaN 11184 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14267 62.979 NaN 298270 35 0 69544 0.261 + 4468 EYIPKWEQF 9 65 620.3060590471663 1238.5975651611325 2 620.3062744140625 MULTI HCD FTMS 0 0 0 14260 107056.8203125 0.5276573910994292 -4 0.10123443603515625 7 Unmodified _EYIPKWEQF_ ENSG00000114405|ENST00000462069|C3orf14 41.8396318013385 0.056899836730939755 1 [YE]{I|L} 3 6 42.548 0 0 3.4352 0 0 0 830.3843442961512 830.3843442961512 26.35029351276792 0 0 0 0 1 1.5228787452803376 0.9247425010840047 0 + [YE]{I|L} 3.4352 + + 69 NaN NaN 122492 NaN 11185 3080 14260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14269 62.984 NaN 1333600 35 0 199680 0.327 + 18276 MPDVDLHL 8 78 470.23380515187733 938.4530573705547 2 470.2339172363281 MULTI HCD FTMS 0 0 0 14268 728936.375 0.5558895547795851 3 -0.06473922729492188 1 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 85.35673624503755 0.01682165142544485 1 MPDVD{I|L}H{I|L} 8 0 + 87.389 0 0 9.312 9.312 97.342 0 0 0 41.56295947543775 8.979400086720375 8.979400086720375 32.52574989159953 0 2.353917193908117 1.5228787452803376 0.3494850021680094 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DV]PMD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DV]PDM{I|L}H{I|L};[DP]VMD{I|L}H{I|L};[DP]VDM{I|L}H{I|L};[DV]PD{I|L}MH{I|L};[DV]PD{I|L}HM{I|L};[H{I|L}]AEEPM{I|L} 9.312;5.8461;5.5022;5.21;5.1026;4.4367;4.037;3.6693;3.4043;3.1134 +;+;-;-;-;-;-;-;-;- + 398 + NaN NaN 278242.4 NaN 11186 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14270 62.988 NaN 1240900 35 0 97427 0.261 + 5894 FPDKVAIQL 9 101 515.8004476549919 1029.5863423767837 2 515.8008422851562 MULTI HCD FTMS 0 0 0 14268 524016.5 0.6335875941651624 2 -0.051971435546875 2 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 103.82355648334675 0.003950725192926219 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 78.973 0 0 7.6703 7.6703 86.382 0 0 0 15.453919826577739 15.453919826577739 15.453919826577739 0.7082530717588753 0 2.1610892374447825 1.3010299956639813 0.3807196863200844 0.2742275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAGA{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAG{I|L}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVQA{I|L}{I|L};{M(Oxidation (M))|F}PDKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVQ{I|L}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAAAV{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}Q{I|L} 7.6703;7.6015;7.3643;7.0731;6.8457;6.3173;6.1693;5.7988;5.5426;5.5397 +;-;-;-;-;-;+;-;-;- + 2509 NaN NaN 271932.2 NaN 11187 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14271 62.992 NaN 1726200 35 0 177380 0.261 + 20017 NYIGLINRI 9 97 538.3164166178896 1074.618280302579 2 538.316650390625 MULTI HCD FTMS 0 0 0 14268 499218.59375 0.07840822064338365 17 -0.4100189208984375 3 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 166.44778350782605 5.759113011535275E-09 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 101.31 0 0 9.4279 9.4279 93.362 0 0 0 9.33820636277541 9.33820636277541 9.33820636277541 9.208187539523749 0 2.6237125054200234 2 0 2.146591250700361 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}[RN]{I|L}{I|L};[YN]{I|L}GQ[RV]{I|L}{I|L};[YN]{I|L}GQ[{I|L}V]R{I|L};[YN]{I|L}G[AG][RV]{I|L}{I|L};[YN]{I|L}G[AG][{I|L}V]R{I|L} 9.4279;8.571;8.5589;7.702;7.6048;7.432;6.229;6.147;5.3721;5.2901 +;-;+;-;-;-;-;-;-;- + 1271 NaN NaN 347562 NaN 11188 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14272 62.995 NaN 644560 35 0 59258 0.261 + 285 AFMKGVFTF 9 92 532.2678518541809 1062.5211507751617 2 532.2678833007812 MULTI HCD FTMS 0 0 0 14268 355171.3125 0.8260860590352102 3 -0.06473922729492188 4 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 103.35351024395868 0.004027461563756449 1 A{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 78.752 0 0 7.4118 7.4118 94.093 0 0 0 59.28842824069392 7.147642715192504 7.147642715192504 24.847594070116017 0 2.555462187404089 0 1.4604093769761874 0 + + A{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}K[VG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}GNRKEA{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}GGGRKEA{M(Oxidation (M))|F};A{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}][YK]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[VG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F};A[WR]R{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KC];{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}K[KP]YY;{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VG]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F} 7.4118;5.0733;4.9177;4.051;3.0507;1.2581;0.97441;0.92881;0.77126;0.74604 +;+;-;-;-;-;-;-;-;- + 668 + NaN NaN 181845.8 NaN 11189 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14273 62.998 NaN 565790 35 0 46316 0.261 + 6718 FPQDRVFML 9 78 584.7944593895264 1167.5743658458528 2 584.7946166992188 MULTI HCD FTMS 0 0 0 14268 266045.65625 0.45471593890418593 -24 0.6550636291503906 5 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 65.47368725323818 0.010552856507075443 1 {I|L}MQDRV{M(Oxidation (M))|F} 7 4 83.562 0 0 7.1569 0 0 0 275.1065767877563 275.1065767877563 62.59282368915983 0 0 0 0 2.25 2 0.7742275032520141 0.3054621874040891 {I|L}MQDRV{M(Oxidation (M))|F} 7.1569 - 490 + NaN NaN 163014.5 NaN 11190 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14274 63.002 NaN 888510 35 0 61558 0.261 + 11474 IYQKAFDLI 9 99 555.813229172886 1109.611905412572 2 555.8134155273438 MULTI HCD FTMS 0 0 0 14268 187454.765625 0.3135235092750089 -3 0.08490753173828125 6 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 129.77232118876745 0.0006187813247758304 1 {I|L}YQKA{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 93.739 0 0 8.4479 8.4479 90.461 0 0 0 23.481610638605105 7.003435819718732 7.003435819718732 7.003435819718732 0 2.774227503252014 2 1.836696871556164 0.3807196863200844 + + {I|L}YQKA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]QKA{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[AG]KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}][AG]KA{M(Oxidation (M))|F}D{I|L}{I|L};[YQ]{I|L}KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}QY{I|L}{I|L};[Y{I|L}]QKA{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}Q{I|L}Y{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}{I|L}QY{I|L} 8.4479;7.8167;7.618;6.9869;5.2924;5.2817;4.9195;4.9085;4.6299;4.5585 +;+;-;-;-;-;-;-;-;- + 2300 + NaN NaN 214181 NaN 11191 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14275 63.005 NaN 755180 35 0 171320 0.261 -1 QRCTFQEDC 9 79 593.7349066565118 1185.4552603798236 2 593.7344970703125 MULTI HCD FTMS 0 0 0 14268 121924.953125 0.32152958512564145 -3 0.08490753173828125 7 Carbamidomethyl (C) _QRCTFQEDC(Carbamidomethyl (C))_ PLXNC1|p.G485E|1|0.19|ENSG00000136040|chr12:94209604-94209604|G/A|missense_variant 3.5964929083625545 0.32375295897743744 1 {I|L}C(Carbamidomethyl (C))[KC]{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T] 8 -1 12.541 0 0 1.0579 0 0 131.00816938503186 0 131.00816938503186 0 7.0564531648135915 0 0 0 0 0 0.7302046884880937 0 {I|L}C(Carbamidomethyl (C))[KC]{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T] 1.0579 - 218 + NaN NaN 203582.5 NaN 11192 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14276 63.008 NaN 221350 35 0 16431 0.261 + 11161 IYISTLKTEF 10 58 607.8369750976562 NaN 0 607.8369750976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _IYISTLKTEF_ ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 30.7034409873982 0.19393244365846177 1 {I|L}ST{I|L}K 5 5 43.443 0 0 3.5795 0 0 276.1468837280299 392.14533411197505 668.2922178400049 0 0 0 0 0 1.274227503252014 0 0.4247425010840047 0 + {I|L}ST{I|L}K 3.5795 + + 47 + NaN NaN 115464.3 NaN 11193 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14277 63.012 NaN 232840 35 0 25503 0.261 + -1 RYFTMMCGTI 10 64 640.2833109020215 1278.552068870843 2 640.283935546875 MULTI HCD FTMS 0 0 0 14268 115868.03125 1 0 0 9 Carbamidomethyl (C) _RYFTMMC(Carbamidomethyl (C))GTI_ REV__ENSG00000164466|ENST00000321442|SFXN1;REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF;REV__ENST00000508290.5_1_5:174919260-174936221:+|nuORF;REV__ENST00000513725.1_1_5:174919106-174937211:+|nuORF 16.149105407346934 0.3600587335443843 1 {M(Oxidation (M))|F}NT{I|L} 4 -1 38.928 0 0 3.0447 0 0 785.2989529473496 0 785.2989529473496 0 30.255762612236907 0 0 0 0.5 0 0 0.5 {M(Oxidation (M))|F}NT{I|L} 3.0447 - 65 NaN NaN 122481.9 NaN 11194 3081 14268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14279 63.016 NaN 595290 35 0 120330 0.327 + 19417 NPISTVTEL 9 63 487.2636999750872 972.5128470169744 2 487.2637939453125 MULTI HCD FTMS 0 0 0 14278 424240.875 0.789988254665663 3 -0.051357269287109375 1 Unmodified _NPISTVTEL_ ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4 89.40071534611396 0.0045416704840156395 1 [VP]QSTVTE{I|L} 9 2 + 60.486 0 0 6.2196 6.2196 85.151 0 0 0 3.641303353600094 15.87205316164642 3.641303353600094 3.641303353600094 0 1.9177353201839438 0 1.6237125054200234 0 [VP]QSTVTE{I|L};{[QN]|[E{I|L}]|[KN]}G{[NV]|[RG]}VTE{I|L};[NP]{I|L}STVTE{I|L};[VP][AG]STVTE{I|L};{[DS]|[MA]|[CV]|TT}P{[NV]|[RG]}VTE{I|L};{[ET]|[MV]}{I|L}[H{I|L}]T{M(Oxidation (M))|F}{I|L} 6.2196;5.8452;5.8104;5.2727;4.864;2.8523 -;-;+;-;-;- + 323 NaN NaN 168302.2 NaN 11195 3082 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14280 63.021 NaN 4449200 35 0 1879300 0.261 + 16475 LSVMTSKRN 9 100 526.2815928167875 1050.5486327003748 2 526.782958984375 MULTI HCD FTMS 0 0 0 14278 723735.25 0.3265712344779616 -9 0.24847030639648438 2 Oxidation (M) _LSVM(Oxidation (M))TSKRN_ REV__ENSG00000106078|ENST00000265136|COBL;REV__nc|ENSG00000106078|O75128-3|COBL 49.93300154707207 0.03166451819912738 1 {[RE]|[WV]}YVVWS 7 -1 65.829 0 0 6.2661 0 0 0 128.06878930749238 128.06878930749238 20.80025969152824 0 0 0 0 1.7614393726401687 1 1.426935982160881 0 {[RE]|[WV]}YVVWS 6.2661 - 6404 NaN NaN 761927.1 NaN 11196 3082 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14281 63.024 NaN 845420 35 0 140100 0.261 + 9963 IEGYFDEKF 9 108 574.2688723278808 1146.5231917225615 2 574.2684326171875 MULTI HCD FTMS 0 0 0 14278 526059 0.9931483282855529 -5 0.14712905883789062 3 Unmodified _IEGYFDEKF_ REV__ENSG00000135002|ENST00000376736|RFK;REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF;REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF 37.97399986684836 0.07464525285885698 1 {M(Oxidation (M))|F}MW{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 8 -1 + 89.219 0 0 7.7817 7.7817 91.927 0 0 0 68.07278570139889 12.213403050078767 12.213403050078767 9.483376082655269 0 2.368415180652539 1.2218487496163564 0.6694451763165201 0.25 {M(Oxidation (M))|F}MW{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GE{I|L}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[TP]T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[TP]{M(Oxidation (M))|F}TEK{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[TP]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[TP]{M(Oxidation (M))|F}T{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[EP]T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[EP]{M(Oxidation (M))|F}TEK{M(Oxidation (M))|F} 7.7817;6.9546;5.2247;5.1033;5.0028;3.7681;3.3735;3.2729;2.7138;2.6132 -;-;-;-;-;-;-;-;-;- 1493 + NaN NaN 214981.2 NaN 11197 3082 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14282 63.028 NaN 462970 35 0 37404 0.261 -1 KYMDVQFDF 9 67 604.7680082675702 1207.5214636019402 2 604.7679443359375 MULTI HCD FTMS 0 0 0 14278 180440.703125 0.06631722108441318 -16 0.4544525146484375 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 35.61225514009592 0.08548698421724198 1 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 57.853 0 0 4.7911 4.7911 85.16 0 0 0 5.597718523607966 35.430599746173215 5.597718523607966 9.164539485499255 0 1.5 1.3979400086720375 0 0 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q[MT]{[SA]|[TG]}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7911;4.0321;3.1348;2.9456;2.3758 -;-;-;-;- 411 NaN NaN 147070.4 NaN 11198 3082 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14283 63.031 NaN 463010 35 0 31631 0.261 + 4819 EYVRLVTEF 9 79 578.3051603630564 1154.5957677929127 2 578.3053588867188 MULTI HCD FTMS 0 0 0 14278 266455.21875 1 0 0 5 Unmodified _EYVRLVTEF_ ENSG00000141101|ENST00000268802|NOB1 72.96794272382148 0.008127836904478181 1 [YE]VR[{I|L}V]TE{M(Oxidation (M))|F} 9 0 + 48.303 0 0 4.1835 4.1835 89.714 0 0 0 31.30773735390441 16.478174818886373 16.478174818886373 48.30252184334938 0 1.3494850021680094 1.2218487496163564 0.7059771852360797 0 + + [YE]VR[{I|L}V]TE{M(Oxidation (M))|F} 4.1835 + + 181 + NaN NaN 160601.3 NaN 11199 3082 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14285 63.036 NaN 671420 35 0 91306 0.327 + 9346 HPSDIEVDLL 10 94 569.2928560740897 1136.5711592149794 2 569.7815551757812 MULTI HCD FTMS 0 0 0 14284 18142.34375 0.027729305843370106 12 -0.2695198059082031 1 Unmodified _HPSDIEVDLL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 47.748688679222035 0.08597705450879027 1 [YT]{[RE]|[WV]}EVD{I|L}{I|L} 9 5 + 71.251 0 0 6.269 6.269 91.248 0 0 0 20.75134972132595 42.57560855094894 20.75134972132595 18.742209500285014 0 1.7416440611282624 1.6989700043360187 0.5752574989159953 0 [YT]{[RE]|[WV]}EVD{I|L}{I|L};[YT][VG]K[DN]D{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}Y[RP]VD{I|L}{I|L};[YK][VG]T[DN]D{I|L}{I|L};[YK]EK[DN]D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[TP][HV]VD{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}Y[HK]{[DS]|[MA]|[CV]|TT}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}K{[WN]|[YH]}{[DS]|[MA]|[CV]|TT}{I|L}{I|L};{[TV]|[{I|L}S]}[YG]K[DN]D{I|L}{I|L};[Y{I|L}][SG]K[DN]D{I|L}{I|L} 6.269;4.6199;3.4993;2.8367;2.767;2.4629;2.1156;2.0303;1.9568;1.8352 -;-;-;-;-;-;-;-;-;- 2084 NaN NaN 185678.3 NaN 11200 3083 14284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14286 63.04 NaN 316640 35 0 33254 0.261 + 11552 IYSQTYFRF 9 67 612.8062523194469 1223.5979517056937 2 612.8055419921875 MULTI HCD FTMS 0 0 0 14284 81340.1171875 0.042079577149746486 26 -0.6870880126953125 2 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 67.83816525789305 0.009787749748478139 1 [Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 76.781 0 0 6.275 6.275 87.77 0 0 0 61.83226801159755 7.1476427151924895 7.1476427151924895 9.208187539523735 0 1.7638793319624577 2 0.4247425010840047 0 + + [Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]S[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]S{[SA]|[TG]}AY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 6.275;5.5224;4.1637 +;-;- + 251 + NaN NaN 147216.1 NaN 11201 3083 14284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14287 63.044 NaN 891890 35 0 180670 0.264 + 3279 EEFDFHVRW 9 65 422.19601423877253 1263.5662133165176 3 422.19610595703125 MULTI HCD FTMS 0 0 0 14284 33372.671875 0.09429190448411358 -4 0.10739517211914062 3 Unmodified _EEFDFHVRW_ ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 16.565877749689598 0.21723083036893404 1 EE{M(Oxidation (M))|F}D{M(Oxidation (M))|F}H 6 3 37.391 0 0 2.9591 0 0 0 456.2364901178344 456.2364901178344 22.786641047341227 0 0 0 0 0.2742275032520141 1.0457574905606752 0 0 + EE{M(Oxidation (M))|F}D{M(Oxidation (M))|F}H 2.9591 + + 48 + NaN NaN 214529 NaN 11202 3083 14284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14289 63.048 NaN 422640 35 0 30217 0.327 + 17728 MCTLFFISGF 10 105 583.2737126597216 1164.532872386243 2 583.274169921875 MULTI HCD FTMS 0 0 0 14288 287301 0.8185414083767186 2 -0.03197479248046875 1 Unmodified _MCTLFFISGF_ REV__ENSG00000144476|ENST00000272928|ACKR3 24.020572477871973 0.2864316864133941 1 {M(Oxidation (M))|F}MCT{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 -1 + 87.952 0 0 7.5526 7.5526 89.908 0 0 0 69.40327426295916 14.09256854528806 14.09256854528806 9.156687756324686 0 3.017220322351953 1.5228787452803376 1.5 0.2302046884880938 {M(Oxidation (M))|F}MCT{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}E{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YG]{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[Y{I|L}]CC{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};T[HN]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{M(Oxidation (M))|F}MS{[QS]|[NT]}[YK]K{M(Oxidation (M))|F};[Y{I|L}]CC{I|L}E{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[ET]|[MV]}[YV]TK{M(Oxidation (M))|F} 7.5526;6.7663;5.7027;4.6474;4.5291;4.4864;4.2146;4.0268;3.7498;2.6102 -;-;-;-;-;-;-;-;-;- 938 + NaN NaN 142850.5 NaN 11203 3084 14288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14290 63.053 NaN 724920 35 0 43899 0.261 + 29118 TYIANYYTF 9 95 578.2703683075323 1154.5261836818645 2 578.2709350585938 MULTI HCD FTMS 0 0 0 14288 206397.265625 0.9179243971229148 2 -0.03197479248046875 2 Unmodified _TYIANYYTF_ REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 24.990960013464015 0.14443998892849796 1 TYW{I|L}[DV][DP]{M(Oxidation (M))|F} 9 -1 + 43.101 0 0 3.7332 3.7332 80.955 0 0 0 8.899699876253777 1.2287219205682476 1.2287219205682476 3.0102999566398125 0 0.7059771852360797 2 0 0 TYW{I|L}[DV][DP]{M(Oxidation (M))|F};TYW{I|L}[VP]DD{M(Oxidation (M))|F};TYW{I|L}[DV]{M(Oxidation (M))|F}[DP];{M(Oxidation (M))|F}{I|L}[CS][WP]QK{M(Oxidation (M))|F};[Y{I|L}]{[CA]|SS}[WP]QK{M(Oxidation (M))|F};{[ET]|[MV]}{M(Oxidation (M))|F}[MT]{[WN]|[YH]}{I|L}N;[{M(Oxidation (M))|F}E]T[DV]{I|L}[CS]KN;{[ET]|[MV]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EK{M(Oxidation (M))|F};{[ET]|[MV]}{M(Oxidation (M))|F}[DV]{I|L}[CS]KN;{[ET]|[MV]}{M(Oxidation (M))|F}[MT][HD]K{M(Oxidation (M))|F} 3.7332;3.4725;3.1427;1.7019;0.83297;0.65573;0.3607;0.32138;0.28678;0.2528 -;-;-;-;-;-;-;-;-;- 655 + NaN NaN 191316.1 NaN 11204 3084 14288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14291 63.056 NaN 174440 35 0 16410 0.261 -1 FYMDTSHLF 9 59 588.7553316353258 1175.4961103374515 2 588.75537109375 MULTI HCD FTMS 0 0 0 14288 95797.03125 0.32908813374858525 37 -0.9937629699707031 3 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 39.957323273324995 0.06554068735427583 1 D{M(Oxidation (M))|F}[YE] 4 -1 22.307 0 0 1.8977 0 0 603.3038197248062 0 603.3038197248062 0 -0.9640156839957825 -0.9640156839957825 0 0 0.8494850021680094 0 0 0 D{M(Oxidation (M))|F}[YE] 1.8977 - 51 NaN NaN 122538.6 NaN 11205 3084 14288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14292 63.06 NaN 422820 35 0 46649 0.261 -1 DHCNFGFKF 9 74 586.2528272055602 1170.4911014779202 2 586.2532958984375 MULTI HCD FTMS 0 0 0 14288 155175.0625 1 0 0 4 Carbamidomethyl (C) _DHC(Carbamidomethyl (C))NFGFKF_ ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant 10.823927491677226 0.26684000660059787 1 DQW 3 -1 17.435 0 0 1.4895 0 0 0 738.2846773736936 738.2846773736936 8.851518780601925 0 0 0 0 0 0 0 0.2742275032520141 DQW 1.4895 - 45 + NaN NaN 142815.7 NaN 11206 3084 14288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14293 63.063 NaN 83533 35 0 4743.3 0.261 + 30216 VIFIIILLKGK 11 41 628.9388846633037 NaN 0 629.4046630859375 PEAK HCD FTMS 0 0 0 14288 62725.16796875 1 0 0 5 Unmodified _VIFIIILLKGK_ REV__ENSG00000198673|ENST00000416284|TAFA2 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112988.8 NaN 11207 3084 14288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14295 63.068 NaN 1935400 35 0 331280 0.327 + 29363 TYPTYRVPSD 10 110 599.7908778922598 1197.5672028513195 2 599.8088989257812 MULTI HCD FTMS 0 0 0 14294 37365.5546875 0.19834876869092719 6 -0.13973236083984375 1 Unmodified _TYPTYRVPSD_ REV__ENSG00000147206|ENST00000395065|NXF3 16.149105407346934 0.3600587335443843 1 Y{I|L}ND{I|L}E{I|L}R 8 -1 64.875 0 0 5.4172 0 0 163.02648740186652 0 163.02648740186652 0 -9.648167490521175 -9.648167490521175 0 0 0 0 1.0114393726401687 0.9802046884880937 Y{I|L}ND{I|L}E{I|L}R 5.4172 - 3109 + NaN NaN 379484.6 NaN 11208 3085 14294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14296 63.072 NaN 1827500 35 0 529290 0.261 + 24713 RYLTVATVF 9 81 535.3056431478079 1068.5967333624158 2 535.305419921875 MULTI HCD FTMS 0 0 0 14294 1021218.4375 0.1818660356974215 12 -0.2931785583496094 2 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 43.77239144664712 0.04802738721622131 1 ATV{M(Oxidation (M))|F} 4 5 55.918 0 0 5.2328 0 0 632.3648155145744 0 632.3648155145744 0 30.850847225428094 0 0 0 2 0 1 0 + ATV{M(Oxidation (M))|F} 5.2328 + + 429 NaN NaN 356824.2 NaN 11209 3085 14294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14297 63.076 NaN 1780800 35 0 233180 0.261 + 6558 FPLDLDVKM 9 113 547.2833211479854 1092.5520893627706 2 547.2837524414062 MULTI HCD FTMS 0 0 0 14294 643723.4375 0.6019507633050635 6 -0.13973236083984375 3 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 133.0521902211835 0.0004198702180815479 1 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 98.828 0 0 9.0456 9.0456 94.723 0 0 0 68.34289638765965 16.478174818886373 16.478174818886373 12.566212630749831 0 2.721848749616356 0 0.5484550065040282 0.2302046884880938 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}PD{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}PD{I|L}[SG]VV{M(Oxidation (M))|F} 9.0456;7.8954;7.8128;6.6988;6.2891;5.9753;5.9364;5.5865;4.954;4.7425 +;+;-;-;-;-;-;-;-;- + 3127 + NaN NaN 355896.9 NaN 11210 3085 14294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14299 63.08 NaN 25254000 35 0 5322700 0.327 + 29073 TYGEIFEKF 9 117 567.2791460627044 1132.5437391922087 2 567.2799072265625 MULTI HCD FTMS 0 0 0 14298 21593672 0.8757928146260676 2 -0.0521697998046875 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 136.39213081522345 0.00021731600835925866 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 114.27 0 0 10.09 10.09 97.766 0 0 0 64.12106126661739 16.478174818886373 16.478174818886373 30.093480084245158 0 2.6989700043360187 2 1.0189301784845295 0.2302046884880938 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE[{M(Oxidation (M))|F}E]{I|L}K{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};[YT][TP]{M(Oxidation (M))|F}TEK{M(Oxidation (M))|F};[YT]GE[{M(Oxidation (M))|F}E]{I|L}{M(Oxidation (M))|F}K;[YT]G{I|L}E{M(Oxidation (M))|F}E{M(Oxidation (M))|F}K;[YG]TE[{M(Oxidation (M))|F}E]{I|L}K{M(Oxidation (M))|F} 10.09;7.4327;7.1984;7.1495;6.6089;6.1797;6.0896;5.87;5.5868;5.5534 +;-;-;-;-;-;-;-;-;- + 9803 + NaN NaN 629672.4 NaN 11211 3086 14298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14300 63.085 NaN 1109600 35 0 148340 0.261 + 29456 TYVENLRLL 9 95 560.8217495275421 1119.6289461218842 2 560.8218994140625 MULTI HCD FTMS 0 0 0 14298 512357.53125 0.31361010591951416 -5 0.09671401977539062 2 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 145.12958885780327 1.3974915176135797E-05 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 113.15 0 0 10.106 10.106 96.584 0 0 0 27.858142223397607 16.478174818886373 16.478174818886373 17.26280941356464 0 2.805462187404089 2 1.591129063296272 1.5356668758921828 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YEN{I|L}R{I|L}{I|L};[YT]VE[R{I|L}]N{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YEGG{I|L}R{I|L}{I|L};[YT]VE[R{I|L}]GG{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]GG{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YE[R{I|L}]N{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT][R{I|L}]N{I|L}{I|L} 10.106;8.5637;7.2893;6.5517;6.5277;5.7474;5.7293;5.7053;3.7354;2.9739 +;-;-;-;-;-;-;-;-;- + 673 NaN NaN 249213 NaN 11212 3086 14298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14301 63.088 NaN 510110 35 0 49868 0.261 + 27073 SYMGHFDLL 9 84 549.7497688734081 1097.4849848136162 2 549.7505493164062 MULTI HCD FTMS 0 0 0 14298 287047.78125 0.02771203332787552 100 -2.762714385986328 3 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 71.13359017698441 0.008721403657255008 1 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 36.815 0 0 3.3545 0 0 591.2122839225943 0 591.2122839225943 0 14.79818770663016 0 0 0 0.805462187404089 0 0.7614393726401688 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.3545 + + 315 NaN NaN 165638.3 NaN 11213 3086 14298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14302 63.092 NaN 1059100 35 0 102770 0.261 + 5154 FFDAELSQM 9 89 552.2393276201218 1102.4641023070435 2 552.2393188476562 MULTI HCD FTMS 0 0 0 14298 398636.125 0.06278738355716572 29 -0.8052558898925781 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 142.0795815696625 1.719916958814042E-05 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 72.833 0 0 6.6064 6.6064 89.065 0 0 0 0.8033316510224466 49.472893776096214 0.8033316510224466 9.208187539523749 0 2.110924374808178 0 1.392159058960253 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}TN{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}TGG{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{NN|[MP]|[D{I|L}]|[EV]}Q{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{NN|[MP]|[D{I|L}]|[EV]}[AG]{M(Oxidation (M))|F};{[QS]|[NT]}PYEA[YV]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{[QN]|[E{I|L}]|[KN]}N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F} 6.6064;5.7711;5.4482;4.613;2.6754;1.8402;1.5631;1.5305;1.5173;1.398 +;-;-;-;-;-;-;-;-;- + 1102 NaN NaN 233369.5 NaN 11214 3086 14298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14303 63.095 NaN 471980 35 0 51611 0.261 + 26094 SPHYQEWIL 9 63 586.7903293566119 1171.5661057800237 2 586.7901000976562 MULTI HCD FTMS 0 0 0 14298 55987.078125 0.10180332921442309 14 -0.3789825439453125 5 Unmodified _SPHYQEWIL_ ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 9.38312468134398 0.279288223203164 1 W{I|L}{I|L} 3 6 26.682 0 0 2.2775 0 0 741.3097401349625 0 741.3097401349625 0 22.078343878162343 0 0 0 0.5 0 0 0 + W{I|L}{I|L} 2.2775 + + 48 NaN NaN 148237.5 NaN 11215 3086 14298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14305 63.1 NaN 5453400 35 0 1546700 0.327 -1 0 102 525.2875456176753 524.2802691510752 1 526.281494140625 MULTI HCD FTMS 0 0 0 14304 2137769.25 0.5447255737913361 3 -0.0849456787109375 1 NaN NaN 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 3 -1 25.418 0 0 4.8481 0 0 0 135.06186029781273 135.06186029781273 6.376816376337896 0 0 0 0 0 1.154901959985743 0.5796896906561032 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 4.8481 - 61 NaN NaN 671788.6 NaN 11216 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14306 63.104 NaN 1656400 35 0 101870 0.261 + 35478 YYFEGIKQTF 10 107 648.3188217650031 1294.6230905968062 2 648.3193969726562 MULTI HCD FTMS 0 0 0 14304 917001 0.16546846516436983 13 -0.3595848083496094 2 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 203.63889746883072 2.641645943637514E-23 1 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 112.25 0 0 8.6705 8.6705 93.516 0 0 0 0.9851775227940891 0.9851775227940891 0.9851775227940891 10.14971700829335 0 3.412437995416459 2 2.4049471895720984 1.3441876774005248 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}KTQ{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}KT[AG]{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};[NP]D{M(Oxidation (M))|F}EG{I|L}KTK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KTQ{M(Oxidation (M))|F} 8.6705;7.8865;7.3175;6.9274;6.6096;6.2196;6.1631;5.9667;5.6796;5.6506 +;-;-;-;-;-;-;-;-;- + 11406 + NaN NaN 324655.2 NaN 11217 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14307 63.108 NaN 995530 35 0 243210 0.263 + 29577 VADPYVVIM 9 50 511.76500996776963 1021.5154670023393 2 511.7653503417969 MULTI HCD FTMS 0 0 0 14304 617840.4375 0.8685535112840076 1 -0.032772064208984375 3 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 57.47134341890925 0.0211188941628804 1 {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F} 9 0 + 63.166 0 0 6.1835 6.1835 92.078 0 0 0 3.5784094103974695 3.5784094103974695 3.5784094103974695 28.967137774837603 0 2.7302046884880937 0 0 0 + + {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[ET]|[MV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VY[VP];{[VA]|[{I|L}G]}{[ET]|[MV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[VP] 6.1835;3.3478;3.1966;0.36094 +;-;-;- + 105 + NaN NaN 231757.5 NaN 11218 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14308 63.111 NaN 773440 35 0 317990 0.261 -1 0 71 427.30247491207956 852.5903968909591 2 427.302734375 MULTI HCD FTMS 0 0 0 14304 348694.0625 0.18164862478397276 -40 1.0495529174804688 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7129 0 0 687.511690081192 0 687.511690081192 0 1.1092437480817807 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7129 - 33 + NaN NaN 191430.7 NaN 11219 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14309 63.114 NaN 554970 35 0 45858 0.261 + 31710 VYLDHAGATLF 11 76 603.8113826546696 1205.6082123761391 2 603.8123779296875 MULTI HCD FTMS 0 0 0 14304 184100.25 0.5840247171233253 -3 0.051372528076171875 5 Unmodified _VYLDHAGATLF_ ENSG00000075643|ENST00000261326|MOCOS 63.960520009940105 0.024090765213710594 1 [YV]EVHAGAT{I|L}{M(Oxidation (M))|F} 11 2 + 84.932 0 0 7.0448 7.0448 86.67 0 0 0 21.237125054200227 16.575773191777927 16.575773191777927 3.565473235138114 0 1.305462187404089 2 0.75 0 [YV]EVHAGAT{I|L}{M(Oxidation (M))|F};[YV]EVHQAT{I|L}{M(Oxidation (M))|F};[YV]EVHAQT{I|L}{M(Oxidation (M))|F};[YV][HV]EAGAT{I|L}{M(Oxidation (M))|F};[YV][HV]EQAT{I|L}{M(Oxidation (M))|F};[YV][HV]EAQT{I|L}{M(Oxidation (M))|F};[{I|L}T]{[{M(Oxidation (M))|F}H]|[RQ]}EAGAT{I|L}{M(Oxidation (M))|F};[{I|L}T]{[{M(Oxidation (M))|F}H]|[RQ]}EQAT{I|L}{M(Oxidation (M))|F};[YV]EVHAG[VS]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][{I|L}T]HAGAT{I|L}{M(Oxidation (M))|F} 7.0448;6.749;6.4993;6.1349;5.8392;5.5895;5.2832;4.9875;4.7791;4.7414 -;-;-;-;-;-;-;-;-;- 1449 NaN NaN 163165.7 NaN 11220 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14310 63.118 NaN 809400 35 0 171770 0.261 + 2462 DRDTDYTDW 9 75 593.7349066565118 1185.4552603798236 2 594.2372436523438 MULTI HCD FTMS 0 0 0 14304 209990.359375 0.8371606120273859 3 -0.0849456787109375 6 Unmodified _DRDTDYTDW_ REV__ENSG00000142552|ENST00000270645|RCN3 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.38838 0 0 462.0633058893923 573.3126314752561 1035.3759373646485 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.38838 - 39 + NaN NaN 220199.1 NaN 11221 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14311 63.121 NaN 261770 35 0 16957 0.262 + 25936 SPDAKIFCL 9 63 497.2576008362225 992.500648739245 2 497.2583923339844 MULTI HCD FTMS 0 0 0 14304 122653.4765625 0.44593394483905285 -6 0.11611175537109375 7 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 53.40400417844725 0.026808823219830042 1 [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 83.918 0 0 8.4552 8.4552 89.085 0 0 0 3.7628749457997657 3.7628749457997657 3.7628749457997657 3.7628749457997657 0 2.4247425010840047 1.6989700043360187 0.3807196863200844 0 + + [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L};SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L};[DP]SA[K{I|L}]{M(Oxidation (M))|F}C{I|L};SPDA[K{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};[PS]DA[K{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};[DP]SA[K{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};[PS][VS][Q{I|L}]{M(Oxidation (M))|F}C{I|L};[PS]D{[{M(Oxidation (M))|F}C]|[YS]}[K{I|L}]A{I|L};[DP]S{[{M(Oxidation (M))|F}C]|[YS]}[K{I|L}]A{I|L};[VG][DV][Q{I|L}]{M(Oxidation (M))|F}C{I|L} 8.4552;8.0761;7.6482;7.3622;5.7589;4.9518;4.7739;4.3286;3.5215;2.255 +;+;-;-;-;-;-;-;-;- + 200 NaN NaN 130077.7 NaN 11222 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14312 63.124 NaN 141090 35 0 8809.4 0.261 -1 0 47 645.5880640333656 NaN 0 645.36767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 1 AVV 3 -1 14.693 0 0 1.1397 0 0 759.8713662485687 257.0936373346313 1016.9650035832001 0 0 0 0 0 0 0 0 0 AVV 1.1397 - 23 + NaN NaN 106299.3 NaN 11223 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14313 63.128 NaN 158220 35 0 18111 0.264 + 15869 LPLEEETL 8 71 472.25309265208034 NaN 0 472.2529602050781 PEAK HCD FTMS 0 0 0 14304 52086.109375 0.45140264088969967 2 -0.055522918701171875 9 Unmodified _LPLEEETL_ ENSG00000196878|ENST00000356082|LAMB3 24.67388899826682 0.38182156912090326 1 TE 2 7 16.083 0 0 1.7065 0 0 131.09442373746327 578.2839449518186 709.3783686892818 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 TE 1.7065 - 8 + NaN NaN 105004.1 NaN 11224 3087 14304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14315 63.133 NaN 2144500 35 0 343370 0.327 + 6559 FPLDLDVKM 9 105 547.2833211479854 1092.5520893627706 2 547.7706909179688 MULTI HCD FTMS 0 0 0 14314 254178.90625 0.4418449579135782 9 -0.22832107543945312 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 100.0907132914201 0.004261551473353346 1 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 89.766 0 0 8.2162 8.2162 93.97 0 0 0 61.77108148272637 16.478174818886373 16.478174818886373 14.428031367991565 0 2.7658715643802765 0 0.25 0.3054621874040891 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}TM;[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D[VG]TVV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}[{M(Oxidation (M))|F}V]NE;{M(Oxidation (M))|F}P{I|L}D[VG]T{I|L}TM;{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F} 8.2162;6.8956;5.7424;5.7148;5.6332;5.2052;4.4062;4.3534;4.297;4.1666 +;+;-;-;-;-;-;-;-;- + 2718 + NaN NaN 404230.9 NaN 11225 3088 14314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14316 63.137 NaN 1253900 35 0 116590 0.261 + 5895 FPDKVAIQL 9 103 515.8004476549919 1029.5863423767837 2 515.8008422851562 MULTI HCD FTMS 0 0 0 14314 440512.625 0.532623179371509 9 -0.22832107543945312 2 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 87.25819977447905 0.004597812622239197 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 68.757 0 0 6.6782 6.6782 86.135 0 0 0 17.147642715192504 38.656389428335274 17.147642715192504 3.881801713828807 0 1.7971062485323517 1.3010299956639813 0.3494850021680094 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA[AG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAAAV{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}Q{I|L};{M(Oxidation (M))|F}P{I|L}[QT]A{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKV{[NV]|[RG]}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKV[Q{I|L}]A{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}GA{I|L} 6.6782;6.3011;6.042;5.1477;4.4026;4.0233;3.9121;3.6907;3.6907;3.6463 +;-;-;-;-;-;-;-;-;- + 2371 NaN NaN 267190.4 NaN 11226 3088 14314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14317 63.141 NaN 639140 35 0 95046 0.261 + 18277 MPDVDLHL 8 68 470.23380515187733 938.4530573705547 2 470.23370361328125 MULTI HCD FTMS 0 0 0 14314 390615.78125 0.2978850283455018 10 -0.2611351013183594 3 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 74.42276476219924 0.02458962149020947 1 MPDVD{I|L}H{I|L} 8 0 + 86.45 0 0 9.212 9.212 97.144 0 0 0 55.97295930833134 8.098943791441968 8.098943791441968 30.822646798160562 0 2.4604093769761874 1.5228787452803376 0.3252574989159953 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DP]VMD{I|L}H{I|L};[DP]VDM{I|L}H{I|L};[DP]VD[H{I|L}]M{I|L};{NN|[MP]|[D{I|L}]|[EV]}[VS][YV]M{I|L};[DP]VD[H{I|L}]{I|L}M;{NN|[MP]|[D{I|L}]|[EV]}[VS][YV]{I|L}M;[VS]{NN|[MP]|[D{I|L}]|[EV]}[YV]M{I|L} 9.212;5.9276;5.1584;4.385;3.8522;1.4241;1.1623;1.0001;0.7383;0.17564 +;+;-;-;-;-;-;-;-;- + 272 + NaN NaN 183229.6 NaN 11227 3088 14314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14318 63.144 NaN 576180 35 0 48301 0.261 + 5080 FEEDTWDELL 10 63 432.85891295799127 1295.5549094741739 3 432.85986328125 MULTI HCD FTMS 0 0 0 14314 75707.296875 0.7599555752413373 2 -0.052173614501953125 4 Unmodified _FEEDTWDELL_ ENSG00000117791|ENST00000366913|MTARC2 6.723162845929126 0.4397169348982109 1 D{M(Oxidation (M))|F}[HC] 4 9 23.94 0 0 1.8479 0 0 775.3763392582019 0 775.3763392582019 0 9.960762528683702 0 0 0 0 0 0.7742275032520141 0 D{M(Oxidation (M))|F}[HC] 1.8479 - 49 NaN NaN 159475 NaN 11228 3088 14314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14319 63.147 NaN 170330 35 0 15007 0.261 -1 YDSCCVIDKIT 11 51 439.5336217219572 1315.5790357660717 3 439.5337829589844 MULTI HCD FTMS 0 0 0 14314 40193.81640625 0.012326631277735353 75 -2.0760841369628906 5 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 5.868138319507137 0.39318500527288264 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 40.942 0 0 3.1121 0 0 0 947.4353544978367 947.4353544978367 25.457574905606748 0 0 0 0 0.9247425010840047 1.6989700043360187 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}S 3.1121 + + 36 + NaN NaN 99817.6 NaN 11229 3088 14314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14320 63.151 NaN 130740 35 0 9655.7 0.261 -1 YECKECDKAF 10 56 450.52129578311275 NaN 0 450.18585205078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _YEC(Carbamidomethyl (C))KEC(Carbamidomethyl (C))DKAF_ ENSG00000176222|ENST00000587539|ZNF404 2.0860074813731053 0.33839895573887124 1 A 1 -1 6.9897 0 0 0.77747 0 0 662.9117341670084 162.05596338443596 824.9676975514443 0 0 0 0 0 0 0 0 0 A 0.77747 + + 7 + NaN NaN 106257.1 NaN 11230 3088 14314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14322 63.155 NaN 1196700 35 0 125250 0.326 + 20018 NYIGLINRI 9 91 538.3164166178896 1074.618280302579 2 538.3163452148438 MULTI HCD FTMS 0 0 0 14321 240155.09375 0.03771921521980067 25 -0.7010078430175781 1 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 99.79894945604345 0.0042691968066200965 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 92.396 0 0 8.598 8.598 96.222 0 0 0 19.186252728754994 14.38826912134661 14.38826912134661 28.394440268278743 0 2.531718309096375 2 0 1.8996498648046138 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};[MT]{I|L}{I|L}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.598;5.9557;5.3687;1.0369 +;-;-;- + 808 NaN NaN 284551.6 NaN 11231 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14323 63.16 NaN 720200 35 0 54564 0.261 + 286 AFMKGVFTF 9 97 532.2678518541809 1062.5211507751617 2 532.2675170898438 MULTI HCD FTMS 0 0 0 14321 207686.828125 0.4830547606777907 11 -0.3040618896484375 2 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 96.11092074494114 0.00436583732602279 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 3 65.9 0 0 6.2022 0 0 71.03389372285683 0 71.03389372285683 0 56.6030140161445 0 0 0 2.517220322351953 0 1.3516784832448856 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 6.2022 - 549 + NaN NaN 190157.5 NaN 11232 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14324 63.163 NaN 611430 35 0 49929 0.261 + -1 MPNLSPHPLM 10 94 584.7805801166855 NaN 0 584.7943725585938 PEAK HCD FTMS 0 0 0 14321 16843.703125 1 0 0 3 2 Oxidation (M) _M(Oxidation (M))PNLSPHPLM(Oxidation (M))_ REV__ENST00000557552.1_1_14:105241736-105242162:-|nuORF 23.789781309258295 0.24993608346601393 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VRDQ 6 -1 25.645 0 0 2.1964 0 0 131.06492215304553 241.09833704166252 372.1632591947081 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VRDQ 2.1964 - 491 + NaN NaN 174974.8 NaN 11233 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14325 63.167 NaN 548750 35 0 41986 0.261 + 11475 IYQKAFDLI 9 83 555.813229172886 1109.611905412572 2 555.8135375976562 MULTI HCD FTMS 0 0 0 14321 234052.390625 0.39145938284520576 5 -0.123779296875 4 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 118.0683919894846 0.0016252157255221692 1 {I|L}YQKA{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 92.621 0 0 8.3472 8.3472 92.039 0 0 0 48.698135779525714 7.900217704352457 7.900217704352457 9.208187539523749 0 2.6989700043360187 2 1.7544321917401078 0.3807196863200844 + + {I|L}YQKA{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[AG]KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]QKA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}][AG]KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]QQ{[VA]|[{I|L}G]}Y{I|L}{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}QY{I|L}{I|L};[Y{I|L}]QQ[YG]{I|L}{I|L}{I|L};[YQ]{I|L}KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]QQ{[VA]|[{I|L}G]}{I|L}Y{I|L};[Y{I|L}]Q[AG]{[VA]|[{I|L}G]}Y{I|L}{I|L} 8.3472;7.5173;7.5145;6.6847;5.5919;5.5315;5.3206;4.8315;4.7803;4.762 +;-;+;-;-;-;-;-;-;- + 1774 + NaN NaN 158400.2 NaN 11234 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14326 63.17 NaN 181850 35 0 27136 0.261 + 2346 DPAKSLTEI 9 45 487.2636999750872 972.5128470169744 2 487.26373291015625 MULTI HCD FTMS 0 0 0 14321 55371.796875 0.10310903957800592 10 -0.2711753845214844 5 Unmodified _DPAKSLTEI_ CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;CYLD|p.E638Rfs*9|1|0.59|ENSG00000083799|chr16:50784411-50784412|-/A|frameshift_variant;ENSG00000083799|ENST00000427738|CYLD;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;nc|ENSG00000083799|Q9NQC7-2|CYLD 34.40172386719151 0.0910440009062557 1 TE{I|L} 3 6 42.945 0 0 4.4159 0 0 611.3290627529982 0 611.3290627529982 0 27.728787452803374 0 0 0 0.8252574989159953 0 0.8494850021680094 0 + TE{I|L} 4.4159 + + 39 NaN NaN 114408.1 NaN 11235 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14327 63.173 NaN 492770 35 0 144840 0.261 + 16982 LYIGWDKHYGF 11 48 466.8992776736009 1397.6760036210028 3 466.8994140625 MULTI HCD FTMS 0 0 0 14321 106472.3671875 0.3430647591021091 -2 0.055522918701171875 6 Unmodified _LYIGWDKHYGF_ ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 23.96415052054722 0.2482819825798713 1 {I|L}Y{I|L}G 4 7 60.433 0 0 4.3238 0 0 0 948.400712880657 948.400712880657 44.94850021680094 0 0 0 0 0.8494850021680094 2 0 0 + {I|L}Y{I|L}G 4.3238 + + 16 + NaN NaN 155220.1 NaN 11236 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14328 63.177 NaN 529150 35 0 116280 0.261 + -1 EDDSTMLSIC 10 65 593.7349066565118 1185.4552603798236 2 593.7343139648438 MULTI HCD FTMS 0 0 0 14321 79347.234375 0.20924743209296012 5 -0.123779296875 7 Carbamidomethyl (C),Oxidation (M) _EDDSTM(Oxidation (M))LSIC(Carbamidomethyl (C))_ REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|53|3|anti-sense 1.4819007175156935 0.4674597685733628 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46265 0 0 62.03714676075453 973.3264485884881 1035.3635953492426 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46265 + + 5 + NaN NaN 168660.6 NaN 11237 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14329 63.18 NaN 201120 35 0 30448 0.264 + 30151 VGTAYIAL 8 60 404.2326600011279 NaN 0 404.56683349609375 PEAK HCD FTMS 0 0 0 14321 8193.0654296875 0.14732812354905567 9 -0.23838424682617188 8 Unmodified _VGTAYIAL_ tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 5.760428011301431 0.38822285293237185 1 {I|L}{I|L} 2 6 7.9588 0 0 0.98689 0 0 257.0979569074237 320.16111169986567 577.2590686072894 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.98689 - 27 + NaN NaN 119043.1 NaN 11238 3089 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14331 63.185 NaN 1632800 35 0 148160 0.327 + 13259 KYMDINFDF 9 103 604.7680082675702 1207.5214636019402 2 604.7684936523438 MULTI HCD FTMS 0 0 0 14330 929104.6875 0.34147307067861504 -8 0.16838836669921875 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 93.93812099017352 0.0044227730261779084 1 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 76.945 0 0 6.3721 6.3721 83.732 0 0 0 0.21474846862918184 16.47817481888638 0.21474846862918184 0.21474846862918184 0 2.2302046884880937 0 0.6861818737241735 0.9698565171985375 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}EKN{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}EKGG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VEKN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.3721;6.3543;6.265;5.8753;5.7087;5.6095;5.6016;5.5918;5.5024;5.3804 +;-;-;-;-;-;-;-;-;- + 3757 NaN NaN 332656.3 NaN 11239 3090 14330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14332 63.189 NaN 528770 35 0 90853 0.261 + 9964 IEGYFDEKF 9 97 574.2688723278808 1146.5231917225615 2 574.2689819335938 MULTI HCD FTMS 0 0 0 14330 267860 0.5056936792537875 3 -0.06154632568359375 2 Unmodified _IEGYFDEKF_ REV__ENSG00000135002|ENST00000376736|RFK;REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF;REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF 19.256988751693697 0.19398022840297344 1 {[YD]|[{M(Oxidation (M))|F}M]}GE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 -1 {[YD]|[{M(Oxidation (M))|F}M]} + + 51.15 16.198 5.8247 4.4613 4.4613 60.72 0 0 0 0 29.37901640716136 0 0 0 2.048455006504028 0 0.7134679910804405 0 {[YD]|[{M(Oxidation (M))|F}M]}GE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 4.4613 - 549 + NaN NaN 162218.1 NaN 11240 3090 14330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14333 63.193 NaN 660820 35 0 127640 0.264 + 2097 DFDRLEHWF 9 65 422.19601423877253 1263.5662133165176 3 422.19635009765625 MULTI HCD FTMS 0 0 0 14330 247611.125 0.6996060919291889 3 -0.06154632568359375 3 Unmodified _DFDRLEHWF_ tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1 2.498486711656943 0.33207666356665205 1 PQ{M(Oxidation (M))|F}[HC] 5 8 19.208 0 0 1.5202 0 0 633.2953358380875 0 633.2953358380875 0 4.515449934959717 0 0 0 0 0 0 0 PQ{M(Oxidation (M))|F}[HC] 1.5202 - 54 NaN NaN 183790.7 NaN 11241 3090 14330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14334 63.196 NaN 1101000 35 0 115050 0.261 + 32316 VYVDLGGSHVF 11 91 596.803681012921 1191.5928090926418 2 596.8038330078125 MULTI HCD FTMS 0 0 0 14330 492385.46875 0.3641394640210311 -3 0.0849456787109375 4 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 114.20165948288297 0.01873520274434939 1 VYVD{I|L}GGSHV{M(Oxidation (M))|F} 11 0 + 114.26 0 0 9.5891 9.5891 92.54 0 0 0 82.32502949339067 9.229404389495912 9.229404389495912 9.018637558036659 0 3.504432191740108 1.6989700043360187 0.7059771852360797 0 + + VYVD{I|L}GGSHV{M(Oxidation (M))|F};VYVD{I|L}GSGHV{M(Oxidation (M))|F};VYVD{I|L}NSHV{M(Oxidation (M))|F};[YV]VD{I|L}GGSHV{M(Oxidation (M))|F};[YV]VEVGGSHV{M(Oxidation (M))|F};VY[EP]GREPV{M(Oxidation (M))|F};[YV]VD{I|L}NSHV{M(Oxidation (M))|F};[YV]DV{I|L}GGSHV{M(Oxidation (M))|F};[YV]D{I|L}VGGSHV{M(Oxidation (M))|F};VY[EP]GREVP{M(Oxidation (M))|F} 9.5891;8.8323;8.6808;8.0836;8.0723;7.3689;7.3647;7.2635;7.2523;6.8932 +;-;-;+;-;-;-;-;-;- + 2121 + NaN NaN 253551.3 NaN 11242 3090 14330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14335 63.199 NaN 269890 35 0 13311 0.261 -1 QSRHPLCVW 9 64 591.7948968630533 NaN 0 591.7939453125 PEAK HCD FTMS 0 0 0 14330 24755.212890625 0.6560901142988002 1 -0.022701263427734375 5 Carbamidomethyl (C) _QSRHPLC(Carbamidomethyl (C))VW_ ENST00000578237.5_1_17:15586405-15587608:-|nuORF 4.3292370932331545 0.2742679634796037 1 T 1 -1 5.4846 0 0 0.46417 0 0 165.14587175169396 912.3530977838499 1077.498969535544 0 0 0 0 0 0 0 0 0 T 0.46417 - 8 + NaN NaN 131475.5 NaN 11243 3090 14330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14336 63.203 NaN 134610 35 0 8401.5 0.261 + -1 ILQKECTQTF 10 46 634.319296746099 NaN 0 634.320068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _ILQKEC(Carbamidomethyl (C))TQTF_ REV__ENSG00000134627|ENST00000299001|PIWIL4;REV__nc|ENSG00000134627|Q7Z3Z4-2|PIWIL4;REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4 7.101721422024254 0.3341061997659158 1 TQTA 4 -1 26.186 0 0 2.0674 0 0 165.07871401137464 697.3238619440061 862.4025759553808 0 0 0 0 0 0 0 0.4247425010840047 0 TQTA 2.0674 - 18 + NaN NaN 102579.8 NaN 11244 3090 14330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14338 63.207 NaN 1380800 35 0 357840 0.326 + 16382 LSFSLRTVF 9 88 535.3056431478079 1068.5967333624158 2 535.3056640625 MULTI HCD FTMS 0 0 0 14337 648167.25 0.11543035642303463 18 -0.5153007507324219 1 Unmodified _LSFSLRTVF_ REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF 36.12702656103203 0.08312389501731911 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS][{I|L}V]ATV{M(Oxidation (M))|F} 10 -1 + 61.493 0 0 5.7546 5.7546 91.153 0 0 0 5.575579613617435 39.537632942370266 5.575579613617435 25.295000083553205 0 2.2134679910804405 1.2218487496163564 1.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS][{I|L}V]ATV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}SVQK{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YG]{[QV]|[N{I|L}]|[RA]|[KV]}QK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS]{[QV]|[N{I|L}]|[RA]|[KV]}QK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}SKKV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}S[KQ]V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}SV[AG]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}SVKK{M(Oxidation (M))|F};[Y{I|L}][SG]{[QV]|[N{I|L}]|[RA]|[KV]}QK{M(Oxidation (M))|F} 5.7546;3.3874;3.2593;3.2477;3.2263;3.2263;2.5257;2.361;1.6974 -;-;-;-;-;-;-;-;- 910 NaN NaN 297359.5 NaN 11245 3091 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14339 63.212 NaN 1007900 35 0 87383 0.261 + 12456 KQPEDYFYL 9 96 601.7905165613729 1201.5664801895457 2 601.7914428710938 MULTI HCD FTMS 0 0 0 14337 323588.0625 0.5798395079066748 -2 0.0521240234375 2 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 45.69961567697781 0.039180348357221985 1 [KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L} 9 0 + 42.238 0 0 3.5153 3.5153 85.128 0 0 0 6.793030540281258 4.328408833346778 4.328408833346778 9.582946177749683 0 1.6747425010840047 0 0.3494850021680094 0.6643943297944485 + + [KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L};[KQ][EP][QP]EEA{M(Oxidation (M))|F};[KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}Y{M(Oxidation (M))|F}{I|L};[YK]{[MS]|[{M(Oxidation (M))|F}A]}[HN]{M(Oxidation (M))|F}Y{I|L};[Y{I|L}][K{I|L}][CS]EEA{M(Oxidation (M))|F};[KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}][YK]D[PG]EA{M(Oxidation (M))|F};[Y{I|L}][YK]D{I|L}[C(Carbamidomethyl (C))D]{I|L};[KQ][EP]S{I|L}[PG]EA{M(Oxidation (M))|F};[YK]{I|L}{I|L}[CS]EEA{M(Oxidation (M))|F} 3.5153;2.7177;2.5556;2.1405;2.0712;2.069;1.8398;1.7021;1.6576;1.4089 +;-;-;-;-;-;-;-;-;- + 466 NaN NaN 238360.6 NaN 11246 3091 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14340 63.215 NaN 261990 35 0 26084 0.261 -1 MPLEDMNEF 9 77 571.2301248533201 1140.4456967734402 2 571.2302856445312 MULTI HCD FTMS 0 0 0 14337 62275.19921875 0.6679165623120202 1 -0.012760162353515625 3 Oxidation (M) _MPLEDM(Oxidation (M))NEF_ ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 13.90604991867851 0.24021115267848145 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.2771 0 0 862.282502048634 0 862.282502048634 0 14.714628317912782 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2771 - 462 + NaN NaN 129747.9 NaN 11247 3091 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14342 63.22 NaN 16230000 35 0 3329400 0.327 + 29074 TYGEIFEKF 9 126 567.2791460627044 1132.5437391922087 2 567.27978515625 MULTI HCD FTMS 0 0 0 14341 13330623 0.5406613492086475 8 -0.23917770385742188 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 160.6895995991744 8.89223804155775E-09 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 118.94 0 0 10.502 10.502 93.119 0 0 0 62.68249381319945 16.478174818886373 16.478174818886373 8.928643424857867 0 2.6549471895720984 2 1.5021934810768762 0.4793036574208875 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};YTGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};YDAT{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}K;YDSVV{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F} 10.502;9.7134;8.8843;7.7315;7.3957;7.3904;7.3092;7.112;6.985;6.8406 +;-;-;-;-;-;-;-;-;- + 15105 + NaN NaN 627427.7 NaN 11248 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14343 63.225 NaN 2104400 35 0 324870 0.261 + 29457 TYVENLRLL 9 109 560.8217495275421 1119.6289461218842 2 560.8222045898438 MULTI HCD FTMS 0 0 0 14341 1570193.625 0.9611034463551587 1 -0.02608489990234375 2 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 187.2963844392146 5.770654906347067E-13 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 119.78 0 0 10.698 10.698 95.177 0 0 0 10.159940911636767 10.159940911636767 10.159940911636767 10.159940911636767 0 2.8807196863200843 2 1.6624379954164592 1.6549471895720984 + + [YT]VEN{I|L}R{I|L}{I|L};TYVEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};TYVEGG{I|L}R{I|L}{I|L};[YV]TEN{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YEN{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YTN{I|L}R{I|L}{I|L};[YV]ETN{I|L}R{I|L}{I|L};[YV]TEGG{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YTGG{I|L}R{I|L}{I|L} 10.698;9.791;9.1173;8.9686;8.7753;7.7706;7.6879;7.5306;7.1941;6.8655 +;+;-;-;-;-;-;-;-;- + 1539 NaN NaN 401846.1 NaN 11249 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14344 63.228 NaN 793180 35 0 118110 0.261 + -1 HQMAGQLQNR 10 93 599.7908778922598 1197.5672028513195 2 599.8088989257812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _HQM(Oxidation (M))AGQLQNR_ REV__ENSG00000198373|ENST00000359154|WWP2;REV__nc|ENSG00000198373|O00308-2|WWP2;REV__WWP2|p.D675Efs*8|1|0.13|ENSG00000198373|chr16:69936360-69936360|C/-|frameshift_variant 10.073929032068715 0.4168838835836452 1 YY{I|L}ND{I|L}ER 8 -1 58.879 0 0 4.9165 0 0 0 128.0332604375332 128.0332604375332 10.439126045904338 0 0 0 0 0 2 0.48965182871044377 1.5669015600442577 YY{I|L}ND{I|L}ER 4.9165 - 1051 NaN NaN 203446.6 NaN 11250 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14345 63.232 NaN 823950 35 0 92373 0.261 + 5155 FFDAELSQM 9 90 552.2393276201218 1102.4641023070435 2 552.2390747070312 MULTI HCD FTMS 0 0 0 14341 219446.34375 0.034564006850229353 35 -0.998870849609375 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 129.77232118876745 0.0006187813247758304 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 74.153 0 0 6.7261 6.7261 89.278 0 0 0 4.681825591057901 50.864875295848435 4.681825591057901 9.208187539523749 0 2.0669015600442577 0 1.392159058960253 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};[MN][HS][RP]SQ{M(Oxidation (M))|F};{[QS]|[NT]}PY[TP][YT]{M(Oxidation (M))|F} 6.7261;5.8909;1.9442;0.97893 +;-;-;- + 728 NaN NaN 205213.2 NaN 11251 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14346 63.235 NaN 368460 35 0 108920 0.262 + -1 PCHCGPHC 8 52 455.66015915616333 909.3057653791267 2 455.66046142578125 MULTI HCD FTMS 0 0 0 14341 102259.1171875 0.6906451151978611 1 -0.02608489990234375 5 Carbamidomethyl (C) _PC(Carbamidomethyl (C))HCGPHC_ REV__nc|ENSG00000197558|A2VEC9|SSPOP 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.2268602051017 0 744.2268602051017 0 13.688943958548375 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 12 + NaN NaN 135696.5 NaN 11252 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14347 63.238 NaN 465520 35 0 58681 0.261 + 18311 MPEQWARLL 9 83 580.2999690774157 1158.5853852216312 2 580.3008422851562 MULTI HCD FTMS 0 0 0 14341 80505.6484375 0.42793526006414095 -1 0.012760162353515625 6 Oxidation (M) _M(Oxidation (M))PEQWARLL_ ENSG00000149269|ENST00000356341|PAK1;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;nc|ENSG00000149269|Q13153-2|PAK1;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant 79.59630418116434 0.005983006570063981 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQWAR{I|L}{I|L} 9 0 + 56.022 0 0 4.8354 4.8354 90.985 0 0 0 4.51976140907405 42.527515650137104 4.51976140907405 56.0223656718172 0 2.5924778212679485 0 1.274227503252014 0.3252574989159953 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQWAR{I|L}{I|L} 4.8354 + + 202 NaN NaN 150241.5 NaN 11253 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14348 63.242 NaN 158680 35 0 16539 0.261 + 12815 KYEFFNKI 8 62 544.7913307211469 NaN 0 544.8909301757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KYEFFNKI_ REV__tr|U7SMD1|U7SMD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01959PE=4SV=1 3.944395688203298 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.64269 0 0 292.1417526239164 679.3204064074619 971.4621590313782 0 0 0 0 0 0 0 0 0 {I|L} 0.64269 + + 12 + NaN NaN 107850 NaN 11254 3092 14341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14350 63.246 NaN 4509900 35 0 502160 0.327 -1 0 110 525.2875456176753 524.2802691510752 1 526.281982421875 MULTI HCD FTMS 0 0 0 14349 438189.875 0.11165528322990372 9 -0.2720222473144531 1 NaN NaN 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 3 -1 27.547 0 0 5.2542 0 0 0 135.06192133296898 135.06192133296898 7.027587216299839 0 0 0 0 0.23965182871044374 1.0969100130080565 0.6109243748081782 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 5.2542 - 93 NaN NaN 509536.1 NaN 11255 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14351 63.251 NaN 1607100 35 0 81942 0.261 + 35479 YYFEGIKQTF 10 123 648.3188217650031 1294.6230905968062 2 648.319091796875 MULTI HCD FTMS 0 0 0 14349 517692.71875 0.09341518667736706 19 -0.5613517761230469 2 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 128.57297698046145 2.2510087319712773E-05 1 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 89.354 0 0 6.9019 6.9019 88.907 0 0 0 0.24080156804436115 0.24080156804436115 0.24080156804436115 9.164539485499262 0 3.0673851849885576 2 2.059894379144197 0.28872548999643577 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}KTQ{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}KT[AG]{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KTQ{M(Oxidation (M))|F};[YV]{[CP]|[EA]}{M(Oxidation (M))|F}YKQT{M(Oxidation (M))|F};[YV][PS]YYKQT{M(Oxidation (M))|F} 6.9019;6.1941;5.9844;5.7713;5.6499;5.2765;4.942;4.7509;4.2122;4.0883 +;-;-;-;-;-;-;-;-;- + 11830 + NaN NaN 338584.1 NaN 11256 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14352 63.254 NaN 979250 35 0 478180 0.264 -1 0 69 427.30247491207956 852.5903968909591 2 427.3026123046875 MULTI HCD FTMS 0 0 0 14349 581475.375 0.3029136815729257 -34 0.8696823120117188 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.6396 0 0 687.5115222345123 0 687.5115222345123 0 1.5051499783199063 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6396 - 25 + NaN NaN 231373.4 NaN 11257 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14353 63.258 NaN 902250 35 0 87643 0.261 + 12457 KQPEDYFYL 9 91 601.7905165613729 1201.5664801895457 2 601.7896728515625 MULTI HCD FTMS 0 0 0 14349 558064.875 1 0 0 4 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 45.69961567697781 0.039180348357221985 1 EE[QP]{[MG]|[TS]}Y{I|L} 8 6 46.418 0 0 3.8631 0 0 236.11583144355626 0 236.11583144355626 0 23.67111652267218 0 0 0 2.1861818737241734 0 0.6747425010840047 0.28872548999643577 EE[QP]{[MG]|[TS]}Y{I|L} 3.8631 - 343 NaN NaN 222884 NaN 11258 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14354 63.261 NaN 465120 35 0 23941 0.261 + 33073 YDIYKSVYD 9 95 583.2737126597216 1164.532872386243 2 583.2738037109375 MULTI HCD FTMS 0 0 0 14349 198818.625 0.5664486977734943 11 -0.3357887268066406 5 Unmodified _YDIYKSVYD_ REV__ENSG00000138642|ENST00000264346|HERC6;REV__nc|ENSG00000138642|Q8IVU3-2|HERC6 13.042465956692817 0.2476723265019929 1 [YV]{I|L}AA[{M(Oxidation (M))|F}T]CM{M(Oxidation (M))|F} 10 -1 + 35.596 0 0 3.0566 3.0566 59.303 0 0 0 5.273357566846233 9.889917747712644 5.273357566846233 0 0 0.2742275032520141 2 0 0 [YV]{I|L}AA[{M(Oxidation (M))|F}T]CM{M(Oxidation (M))|F};[YV]AA{I|L}[{M(Oxidation (M))|F}T]CM{M(Oxidation (M))|F};[YV][W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YV]AA{I|L}[{M(Oxidation (M))|F}T]C{M(Oxidation (M))|F}M;[YV]{I|L}AA[{M(Oxidation (M))|F}T]C{M(Oxidation (M))|F}M;{[YD]|[{M(Oxidation (M))|F}M]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YQ]{I|L}{I|L}[{M(Oxidation (M))|F}T]CM{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YG]A{I|L}{I|L}[{M(Oxidation (M))|F}T]CM{M(Oxidation (M))|F};[YQ]{I|L}{I|L}[{M(Oxidation (M))|F}T]C{M(Oxidation (M))|F}M 3.0566;3.0566;2.7407;2.5396;2.5396;1.864;1.7882;1.5568;1.3926;1.2712 -;-;-;-;-;-;-;-;-;- 359 NaN NaN 149667.2 NaN 11259 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14355 63.264 NaN 564870 35 0 94835 0.261 + 29578 VADPYVVIM 9 70 511.76500996776963 1021.5154670023393 2 511.7650146484375 MULTI HCD FTMS 0 0 0 14349 203359.453125 0.2858805548228855 7 -0.21309280395507812 6 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 48.345845343767074 0.03388484103555672 1 {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F} 9 0 + 49.359 0 0 4.8319 4.8319 90.04 0 0 0 40.37909996297415 0.4305997461732147 0.4305997461732147 32.730012720637376 0 2.3494850021680094 0 0 0 + + {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VY[VP] 4.8319;1.6278 +;- + 155 + NaN NaN 166571.4 NaN 11260 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14356 63.268 NaN 347250 35 0 22315 0.261 + 16818 LYECTGQFDF 10 70 611.7577778575575 1221.5010027819148 2 611.7579345703125 MULTI HCD FTMS 0 0 0 14349 90910.0546875 0.4158288437776119 -4 0.09096908569335938 7 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 24.990960013464015 0.27735500881591096 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 50.433 0 0 4.1288 0 0 680.2843228687306 0 680.2843228687306 0 34.97547537623447 0 0 0 1.4247425010840047 0 0 0.4247425010840047 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1288 - 206 NaN NaN 139728.2 NaN 11261 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14357 63.271 NaN 335060 35 0 34078 0.261 + 29119 TYIANYYTF 9 72 578.2703683075323 1154.5261836818645 2 578.2706909179688 MULTI HCD FTMS 0 0 0 14349 90009.390625 0.40030479752075965 11 -0.3357887268066406 8 Unmodified _TYIANYYTF_ REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 22.736283301280096 0.1639198954644489 1 TE{M(Oxidation (M))|F} 3 -1 25.45 0 0 2.2044 0 0 759.3571600996364 0 759.3571600996364 0 -0.8260095831277781 -0.8260095831277781 0 0 0.4247425010840047 0 0.7302046884880937 0 TE{M(Oxidation (M))|F} 2.2044 - 69 + NaN NaN 133558 NaN 11262 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14358 63.274 NaN 219140 35 0 16082 0.263 -1 YYIKIARFMP 10 68 439.9072379429574 1316.6998844290722 3 440.2026062011719 MULTI HCD FTMS 0 0 0 14349 8912.173828125 1 0 0 9 Oxidation (M) _YYIKIARFM(Oxidation (M))P_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 3.876331618118854 0.45478566516190344 1 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 -1 31.471 0 0 2.3901 0 0 0 851.5005185445597 851.5005185445597 20.674100046527357 0 0 0 0 0 2 0.3054621874040891 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 2.3901 - 39 NaN NaN 114642.1 NaN 11263 3093 14349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14360 63.279 NaN 1678800 35 0 331700 0.327 + 6560 FPLDLDVKM 9 97 547.2833211479854 1092.5520893627706 2 547.770751953125 MULTI HCD FTMS 0 0 0 14359 151329.109375 0.2630588232098672 15 -0.4436454772949219 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 1 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 76.358 0 0 6.989 6.989 91.751 0 0 0 53.962345622814624 14.973024840566467 14.973024840566467 13.64150745282187 0 2.530369551124698 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[{M(Oxidation (M))|F}E]P[KS]E;{M(Oxidation (M))|F}E[VP]{I|L}[SG]{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}E]{I|L}P[KS]E;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PE 6.989;5.7404;5.1475;4.8835;4.8106;3.3337;2.6741;2.6206;2.548;2.488 +;+;-;-;-;-;-;-;-;- + 1471 + NaN NaN 337300.1 NaN 11264 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14361 63.284 NaN 939730 35 0 135100 0.261 -1 0 98 541.261647089203 540.254370622603 1 542.2772216796875 MULTI HCD FTMS 0 0 0 14359 18333.30859375 0.05213305419007251 10 -0.302978515625 2 NaN NaN 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F} 3 -1 23.461 0 0 4.3425 0 0 114.06575475521863 0 114.06575475521863 0 16.22486274231747 0 0 0 0 0 0 0.5044321917401079 {M(Oxidation (M))|F}N{M(Oxidation (M))|F} 4.3425 - 59 + NaN NaN 223356.9 NaN 11265 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14362 63.287 NaN 672790 35 0 41342 0.261 + 5896 FPDKVAIQL 9 102 515.8004476549919 1029.5863423767837 2 515.8004150390625 MULTI HCD FTMS 0 0 0 14359 152998.875 0.18499071903504263 15 -0.4436454772949219 3 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 57.24910588100465 0.021429789259086996 1 VA{I|L}Q{I|L} 5 4 37.677 0 0 3.6595 0 0 487.2424134445077 0 487.2424134445077 0 14.718487496163561 0 0 0 0.8494850021680094 0 0 0.25 + VA{I|L}Q{I|L} 3.6595 + + 800 NaN NaN 188357.4 NaN 11266 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14363 63.29 NaN 339930 35 0 25427 0.261 + 25937 SPDAKIFCL 9 82 497.2576008362225 992.500648739245 2 497.25787353515625 MULTI HCD FTMS 0 0 0 14359 186512.34375 0.6781070340654655 1 -0.0260772705078125 4 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 89.40071534611396 0.0045416704840156395 1 [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 93.963 0 0 9.4673 9.4673 92.436 0 0 0 8.979400086720375 10.55462187404089 8.979400086720375 8.979400086720375 0 2.4247425010840047 1.6989700043360187 1.3851518780601921 0 + + [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L};[DP]SA[K{I|L}]{M(Oxidation (M))|F}C{I|L};SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L};[PS]DA{M(Oxidation (M))|F}[K{I|L}]C{I|L};[PS]DA[K{I|L}]C{M(Oxidation (M))|F}{I|L};[DP]SA{M(Oxidation (M))|F}[K{I|L}]C{I|L};[PS]DA[K{I|L}]C{I|L}{M(Oxidation (M))|F};[DP]SA[K{I|L}]C{M(Oxidation (M))|F}{I|L};[PS]DA{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}K{I|L};[DP]SA[K{I|L}]C{I|L}{M(Oxidation (M))|F} 9.4673;8.5625;8.4038;8.1249;7.7014;7.2202;6.9972;6.7967;6.5648;6.0925 +;-;+;-;-;-;-;-;-;- + 590 NaN NaN 133762.4 NaN 11267 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14364 63.294 NaN 210460 35 0 14609 0.261 -1 MAEPPRMMDF 10 64 620.7629519354753 1239.5113509377504 2 620.7632446289062 MULTI HCD FTMS 0 0 0 14359 54658.34375 0.35824850433394445 -3 0.0716552734375 5 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 15.248480904072842 0.3684828712757339 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 43.928 0 0 3.544 0 0 698.2959487074502 0 698.2959487074502 0 36.48062535455438 0 0 0 1.5 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.544 - 196 NaN NaN 116466.3 NaN 11268 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14365 63.297 NaN 493470 35 0 98250 0.261 + -1 YAYFMDMVM 9 70 593.7349066565118 1185.4552603798236 2 593.7359008789062 MULTI HCD FTMS 0 0 0 14359 91883.640625 0.24230732178097594 10 -0.302978515625 6 Oxidation (M) _YAYFMDMVM(Oxidation (M))_ REV__ENSG00000135537|ENST00000368977|AFG1L 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46265 0 0 62.037335454650766 973.3300240702305 1035.3673595248813 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46265 + + 20 + NaN NaN 153211 NaN 11269 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14366 63.3 NaN 77629 35 0 5472.6 0.261 + 10394 INEKDEHINF 10 42 629.8084490495389 NaN 0 629.8087768554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _INEKDEHINF_ tr|U7SSV7|U7SSV7_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01514PE=4SV=1 9.38312468134398 0.33215363477037435 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93629.6 NaN 11270 3094 14359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14368 63.305 NaN 981360 35 0 57488 0.327 + 6719 FPQDRVFML 9 102 584.7944593895264 1167.5743658458528 2 584.7944946289062 MULTI HCD FTMS 0 0 0 14367 272352.5 0.4654953758539416 -10 0.23746490478515625 1 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 80.6760300276096 0.005633624786464751 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRVYM{I|L} 9 1 + 66.882 0 0 5.7283 5.7283 84.55 0 0 0 6.532621531037002 40.84675556591044 6.532621531037002 4.030899869919438 0 2.1861818737241734 1.5228787452803376 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRVYM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PQDRVYM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRVYP{M(Oxidation (M))|F};{M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DRVYM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}P[AG]DRVYM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L} 5.7283;5.3831;5.3221;5.0482;4.9987;4.9396;4.703;4.5944;4.5335;4.2884 -;+;-;-;+;-;-;-;-;- + 2215 NaN NaN 243431 NaN 11271 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14369 63.31 NaN 621020 35 0 60540 0.261 + 20019 NYIGLINRI 9 70 538.3164166178896 1074.618280302579 2 538.3165283203125 MULTI HCD FTMS 0 0 0 14367 247500.921875 0.038872964939150684 31 -0.8745002746582031 2 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 88.95385435242217 0.004553379958619559 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 84.618 0 0 7.8742 7.8742 94.781 0 0 0 15.65552802072581 15.65552802072581 15.65552802072581 24.86371556024956 0 2.492992819099939 1.6989700043360187 0 1.336696871556164 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L} 7.8742;5.5605;5.1177 +;-;- + 228 NaN NaN 188179.1 NaN 11272 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14370 63.313 NaN 490800 35 0 40946 0.261 + 1277 AYMPHTFFI 9 81 571.7703588933117 1141.5261648534233 2 571.7710571289062 MULTI HCD FTMS 0 0 0 14367 108718.875 0.12198157312501144 -10 0.23746490478515625 3 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 81.61307344734483 0.005330412723537057 1 AY{M(Oxidation (M))|F}PH 5 4 55.529 0 0 4.8644 0 0 0 523.2568453424436 523.2568453424436 22.948879477912968 0 0 0 0 0.805462187404089 2 0 0 + AY{M(Oxidation (M))|F}PH 4.8644 + + 190 + NaN NaN 154433.9 NaN 11273 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14371 63.317 NaN 296550 35 0 44304 0.262 + 18278 MPDVDLHL 8 56 470.23380515187733 938.4530573705547 2 470.2337951660156 MULTI HCD FTMS 0 0 0 14367 169574.546875 0.12931817178734378 17 -0.5024642944335938 4 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 74.42276476219924 0.02458962149020947 1 MPDVD{I|L}H{I|L} 8 0 + 84.889 0 0 9.0456 9.0456 96.955 0 0 0 63.919497169889326 8.098943791441968 8.098943791441968 30.510299956639813 0 2.4291746928241125 1.3979400086720375 0.3252574989159953 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DP]VMD{I|L}H{I|L};[DP]VDM{I|L}H{I|L};[DP]VD[H{I|L}]M{I|L} 9.0456;5.7945;4.9409;3.9085;3.1168;0.076999 +;+;-;-;-;- + 122 + NaN NaN 119374.9 NaN 11274 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14372 63.32 NaN 437330 35 0 64296 0.261 + 33176 YESEYYLTF 9 68 607.7666106090023 1213.5186682848046 2 607.7671508789062 MULTI HCD FTMS 0 0 0 14367 120773.375 0.489264191723047 -2 0.058887481689453125 5 Unmodified _YESEYYLTF_ tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 16.942295170755138 0.21397866736869717 1 MPWT{M(Oxidation (M))|F} 5 7 51.331 0 0 4.2299 0 0 533.2293568341812 0 533.2293568341812 0 34.87695494332455 0 0 0 1.2887254899964358 0 0.3494850021680094 0 MPWT{M(Oxidation (M))|F} 4.2299 - 242 NaN NaN 161727 NaN 11275 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14373 63.323 NaN 193230 35 0 24169 0.261 -1 VYIQEMFRF 9 56 624.8078943265688 1247.6012357199374 2 625.309814453125 MULTI HCD FTMS 0 0 0 14367 49489.83203125 0.6579985214843367 2 -0.055713653564453125 6 Oxidation (M) _VYIQEM(Oxidation (M))FRF_ ENSG00000138613|ENST00000261879|APH1B;nc|ENSG00000138613|Q8WW43-2|APH1B 29.84058131909904 0.11198220037953927 1 [YV]{I|L}Q[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 -1 + 48.847 0 0 3.9153 3.9153 84.676 0 0 0 37.592503013052934 6.8918801029555965 6.8918801029555965 9.208187539523749 0 1.3494850021680094 1.6989700043360187 0 0 [YV]{I|L}Q[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[YV]{I|L}[AG][{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[YV]{I|L}Q{[C(Carbamidomethyl (C))G]|[NC]}[KA]Y{M(Oxidation (M))|F};[YV]{[HG]|PP}[WH]{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[YV][YE]S{[RE]|[WV]}R{M(Oxidation (M))|F};[YV][YE][QP]{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 3.9153;3.1772;3.078;2.0934;1.9762;1.9762 +;-;-;-;-;- + 97 + NaN NaN 110545.2 NaN 11276 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14374 63.327 NaN 187800 35 0 16130 0.263 + 30350 VLGAPSSTEL 10 60 487.2636999750872 972.5128470169744 2 487.2640075683594 MULTI HCD FTMS 0 0 0 14367 43376.32421875 0.08077200638288859 16 -0.47640228271484375 7 Unmodified _VLGAPSSTEL_ ENSG00000176092|ENST00000308182|CRYBG2 19.256988751693697 0.33098864134661865 1 E{I|L} 2 8 26.964 0 0 2.7726 0 0 712.3762517675417 0 712.3762517675417 0 20.441453415473205 0 0 0 0.3252574989159953 0 0.4247425010840047 0 + E{I|L} 2.7726 + + 16 NaN NaN 117763.8 NaN 11277 3095 14367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14376 63.331 NaN 3205500 35 0 344970 0.327 + 13260 KYMDINFDF 9 117 604.7680082675702 1207.5214636019402 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14375 2127005.75 0.7817366488139375 -2 0.052272796630859375 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 136.39213081522345 0.00021731600835925866 1 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 89.419 0 0 7.4052 7.4052 87.93 0 0 0 3.2568864632742844 44.24607471246341 3.2568864632742844 4.9168929071461775 0 2.3494850021680094 0 1.2000612056866313 1.1861818737241734 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VEKN{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.4052;6.998;6.7782;6.6426;6.3711;6.2354;6.0157;5.7654;5.6344;5.6085 +;-;-;-;-;-;-;-;-;- + 7021 NaN NaN 575378.2 NaN 11278 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14377 63.336 NaN 1597500 35 0 193460 0.261 + 32317 VYVDLGGSHVF 11 99 596.803681012921 1191.5928090926418 2 596.8038330078125 MULTI HCD FTMS 0 0 0 14375 1092186.75 0.807717373880912 3 -0.095123291015625 2 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 199.7497906028788 4.84643000741473E-21 1 [YV]VD{I|L}GGSHV{M(Oxidation (M))|F} 11 0 + 116.59 0 0 9.7842 9.7842 90.218 0 0 0 4.195003167622616 86.13751490189807 4.195003167622616 3.1160423527677352 0 3.642159058960253 1.6989700043360187 1.8798545532927078 0 + + [YV]VD{I|L}GGSHV{M(Oxidation (M))|F};[YV]VEVGGSHV{M(Oxidation (M))|F};[YV]VD{I|L}GGSH{M(Oxidation (M))|F}V;[YV]VEVGGSH{M(Oxidation (M))|F}V;[YV]DV{I|L}GGSHV{M(Oxidation (M))|F};[YV]VD{I|L}NSHV{M(Oxidation (M))|F};[YV]D{I|L}VGGSHV{M(Oxidation (M))|F};[YV]V{I|L}DGGSHV{M(Oxidation (M))|F};[YV]VEVNSHV{M(Oxidation (M))|F};[YV]DV{I|L}GGSH{M(Oxidation (M))|F}V 9.7842;9.5227;9.2789;9.0174;8.9642;8.8459;8.7027;8.6487;8.5844;8.4589 +;-;-;-;-;-;-;-;-;- + 10843 NaN NaN 325538.6 NaN 11279 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14378 63.339 NaN 297690 35 0 23783 0.262 -1 0 67 503.3062114231276 502.2989349565276 1 505.31182861328125 MULTI HCD FTMS 0 0 0 14375 410861.5625 0.14117005066396762 12 -0.36193084716796875 3 NaN NaN 1 E 1 -1 0.088644 0 0 0.017648 0 0 155.13024706765884 215.10354028873283 370.23378735639164 0 0 0 0 0 0 0 0 0 E 0.017648 - 3 + NaN NaN 131825.1 NaN 11280 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14379 63.343 NaN 631560 35 0 82979 0.261 + 2233 DLADYFEKF 9 105 574.2688723278808 1146.5231917225615 2 574.2688598632812 MULTI HCD FTMS 0 0 0 14375 323036.84375 0.6098622043249025 9 -0.2735404968261719 4 Unmodified _DLADYFEKF_ tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 30.636539890814138 0.10832830463492794 1 T[{I|L}P]GE[YG]YT{M(Oxidation (M))|F} 10 7 + 46.08 0 0 4.0191 4.0191 82.848 0 0 0 6.958865705675876 7.1250074119184035 6.958865705675876 6.505149978319906 0 0.4247425010840047 0 0.8979400086720375 0 T[{I|L}P]GE[YG]YT{M(Oxidation (M))|F};T[{I|L}P]EG[YG]YT{M(Oxidation (M))|F};T[{I|L}P]E[YN]YT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GE[KG]EG[RH];{[YD]|[{M(Oxidation (M))|F}M]}GE[KG]GE[RH];{[YD]|[{M(Oxidation (M))|F}M]}SMG[KP]G[RH];[YT]CEG[KP]G[RH];[YG]A{I|L}[MN]EG[RH];{[YD]|[{M(Oxidation (M))|F}M]}G{[MS]|[{M(Oxidation (M))|F}A]}[KP]G[RH];[YG]{M(Oxidation (M))|F}EG[KP]G[RH] 4.0191;3.4517;3.1446;3.0489;2.4815;2.2124;1.9909;1.819;1.7801;1.67 -;-;-;-;-;-;-;-;-;- 1618 + NaN NaN 182100.4 NaN 11281 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14380 63.346 NaN 571080 35 0 164730 0.262 + 16983 LYIGWDKHYGF 11 53 466.8992776736009 1397.6760036210028 3 466.8995361328125 MULTI HCD FTMS 0 0 0 14375 199284.953125 0.6421163184632349 5 -0.16078948974609375 5 Unmodified _LYIGWDKHYGF_ ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 23.96415052054722 0.2482819825798713 1 {I|L}Y{I|L}G 4 7 59.993 0 0 4.2923 0 0 0 948.3927792720441 948.3927792720441 44.58674701179433 0 0 0 0 0.805462187404089 2 0 0 + {I|L}Y{I|L}G 4.2923 + + 66 + NaN NaN 164414.2 NaN 11282 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14381 63.349 NaN 324000 35 0 16118 0.261 + 11476 IYQKAFDLI 9 84 555.813229172886 1109.611905412572 2 555.8135375976562 MULTI HCD FTMS 0 0 0 14375 136448.109375 0.22821340360463424 12 -0.36193084716796875 6 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 72.96794272382148 0.008127836904478181 1 {I|L}YQ 3 6 50.758 0 0 4.5744 0 0 0 702.3885592096311 702.3885592096311 29.402281476392034 0 0 0 0 0.9247425010840047 2 0 0.3807196863200844 + {I|L}YQ 4.5744 + + 336 + NaN NaN 134411.1 NaN 11283 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14382 63.353 NaN 293370 35 0 39036 0.264 + 33880 YLLYCDPCKF 10 68 422.19601423877253 1263.5662133165176 3 422.1960144042969 MULTI HCD FTMS 0 0 0 14375 51726.7578125 0.1461499554245423 9 -0.2735404968261719 7 Unmodified _YLLYCDPCKF_ REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF 4.189502756095605 0.45312800054222196 1 {M(Oxidation (M))|F}QD{M(Oxidation (M))|F}[HC] 6 -1 21.911 0 0 1.7341 0 0 468.2459889142594 0 468.2459889142594 0 4.921525057367404 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QD{M(Oxidation (M))|F}[HC] 1.7341 - 203 NaN NaN 128610.2 NaN 11284 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14383 63.356 NaN 264540 35 0 36743 0.261 + -1 FERCAMVII 9 66 577.7870402091164 1153.5595274850327 2 577.787109375 MULTI HCD FTMS 0 0 0 14375 39224.91796875 0.41983896272265736 11 -0.33575439453125 8 Carbamidomethyl (C),Oxidation (M) _FERC(Carbamidomethyl (C))AM(Oxidation (M))VII_ REV__ENSG00000127947|ENST00000248594|PTPN12;REV__nc|ENSG00000127947|Q05209-3|PTPN12 10.073929032068715 0.27331982688540024 1 {I|L}{I|L} 2 -1 25.217 0 0 2.186 0 0 909.3782167205723 0 909.3782167205723 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.186 + + 21 NaN NaN 121257.6 NaN 11285 3096 14375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14385 63.361 NaN 10218000 35 0 2030200 0.327 + 29075 TYGEIFEKF 9 120 567.2791460627044 1132.5437391922087 2 567.2796630859375 MULTI HCD FTMS 0 0 0 14384 8374756 0.33966206067437477 13 -0.38466644287109375 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 160.6895995991744 8.89223804155775E-09 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 115.65 0 0 10.211 10.211 95.921 0 0 0 13.484848393029694 13.484848393029694 13.484848393029694 13.484848393029694 0 2.6237125054200234 2 1.5233623702246375 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}K;TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 10.211;9.0207;7.8168;7.4281;7.3116;7.1634;7.146;6.7477;6.7174;6.6652 +;-;-;-;-;-;-;-;-;- + 13645 + NaN NaN 604649.6 NaN 11286 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14386 63.365 NaN 1428700 35 0 207900 0.261 + 29458 TYVENLRLL 9 96 560.8217495275421 1119.6289461218842 2 560.8220825195312 MULTI HCD FTMS 0 0 0 14384 851089.375 0.5209452633389452 6 -0.18507766723632812 2 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 187.2963844392146 5.770654906347067E-13 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 117.66 0 0 10.509 10.509 92.856 0 0 0 8.15056674074016 8.15056674074016 8.15056674074016 8.15056674074016 0 2.8807196863200843 2 1.4742887089386452 1.6307196863200843 + + [YT]VEN{I|L}R{I|L}{I|L};TYVEN{I|L}R{I|L}{I|L};TYVEGG{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YV]TEN{I|L}R{I|L}{I|L};[YT]VG{[DA]|[EG]}{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YEN{I|L}R{I|L}{I|L};[YT]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};[YT]R{[DA]|[EG]}{I|L}[VG]{I|L}{I|L} 10.509;9.7808;8.9584;8.9492;7.7381;7.6921;7.5498;7.2442;6.8161;6.5335 +;+;-;-;-;-;-;-;-;- + 1252 NaN NaN 291310.5 NaN 11287 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14387 63.369 NaN 952070 35 0 223930 0.261 + 16383 LSFSLRTVF 9 82 535.3056431478079 1068.5967333624158 2 535.3054809570312 MULTI HCD FTMS 0 0 0 14384 394836.625 0.07031538904907347 24 -0.6812973022460938 3 Unmodified _LSFSLRTVF_ REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF 36.12702656103203 0.08312389501731911 1 ATV{M(Oxidation (M))|F} 4 -1 51.714 0 0 4.8395 0 0 632.3643870965237 0 632.3643870965237 0 33.92281585743653 0 0 0 1.7302046884880937 0 1 0 ATV{M(Oxidation (M))|F} 4.8395 - 307 NaN NaN 227685.9 NaN 11288 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14388 63.372 NaN 494480 35 0 47616 0.261 + 27074 SYMGHFDLL 9 87 549.7497688734081 1097.4849848136162 2 549.7501220703125 MULTI HCD FTMS 0 0 0 14384 331133.9375 0.03196817851031778 111 -3.0730438232421875 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 64.23631603340823 0.01165516075559909 1 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 34.329 0 0 3.128 0 0 591.2103138654312 0 591.2103138654312 0 15.816694200196576 0 0 0 0.3807196863200844 0 0.7614393726401688 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.128 + + 93 NaN NaN 154595.9 NaN 11289 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14389 63.376 NaN 138980 35 0 14217 0.262 -1 ETMMTCAYDDP 11 44 450.4951087704536 1348.463496911561 3 450.8294982910156 MULTI HCD FTMS 0 0 0 14384 42683.91015625 0.4932490785108403 -3 0.08179092407226562 5 Carbamidomethyl (C),Oxidation (M) _ETM(Oxidation (M))MTC(Carbamidomethyl (C))AYDDP_ HKDC1|p.G212E|1|0.44|ENSG00000156510|chr10:69240695-69240695|G/A|missense_variant 1.1097533296519684 0.4140536653900533 1 [YT]GT 4 -1 36.995 0 0 2.7435 0 0 0 923.2604078825171 923.2604078825171 20.79689690656103 0 0 0 0 0 2 0.3807196863200844 0 [YT]GT 2.7435 - 29 NaN NaN 104045.8 NaN 11290 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14390 63.379 NaN 105780 35 0 8761.6 0.261 -1 VYIQEMFRF 9 52 624.8078943265688 1247.6012357199374 2 625.3085327148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _VYIQEM(Oxidation (M))FRF_ ENSG00000138613|ENST00000261879|APH1B;nc|ENSG00000138613|Q8WW43-2|APH1B 21.536976647645854 0.1742816388551942 1 [YV]{I|L}Q 4 -1 41.242 0 0 3.3057 0 0 0 741.3043637907579 741.3043637907579 41.15356566548286 0 0 0 0 0.805462187404089 1.6989700043360187 0 0 [YV]{I|L}Q 3.3057 + + 21 + NaN NaN 98981 NaN 11291 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14391 63.382 NaN 691980 35 0 191130 0.264 + 11211 IYKIDFVRF 9 67 400.8970031738281 NaN 0 400.8970031738281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IYKIDFVRF_ ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 39.212999716063884 0.08079931377422125 1 D{M(Oxidation (M))|F}VR 4 5 12.027 0 0 1.5038 0 0 117.43755428591824 162.05588709049064 279.4934413764089 0 0 0 0 0 0 0 0 0 + D{M(Oxidation (M))|F}VR 1.5038 + + 39 + NaN NaN 183056.2 NaN 11292 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14392 63.386 NaN 359870 35 0 35137 0.261 + -1 LYQYLCHFSS 10 72 439.86803909387726 NaN 0 439.8682556152344 PEAK HCD FTMS 0 0 0 14384 8380.205078125 0.19986468137237776 -9 0.22832107543945312 8 Carbamidomethyl (C) _LYQYLC(Carbamidomethyl (C))HFSS_ REV__ENSG00000186103|ENST00000334384|ARGFX 3.876331618118854 0.3368666864104206 1 {I|L} 1 -1 5.4846 0 0 0.62486 0 0 629.5693168578733 132.04548059635002 761.6147974542233 0 0 0 0 0 0 0 0 0 {I|L} 0.62486 + + 19 + NaN NaN 137828.2 NaN 11293 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14393 63.389 NaN 148120 35 0 8840.9 0.261 + 19312 NMRYCHDPLE 10 57 639.2732361087767 1276.5319192843533 2 639.2738647460938 MULTI HCD FTMS 0 0 0 14384 76364.109375 1 0 0 9 Unmodified _NMRYCHDPLE_ REV__nc|ENSG00000101049|Q9HBY8-1|SGK2;REV__nc|ENSG00000101049|Q9HBY8-3|SGK2 9.38312468134398 0.42334543440173333 1 TE{I|L} 3 -1 30.445 0 0 2.385 0 0 915.368505826819 0 915.368505826819 0 2.998037644757048 0 0 0 0 0 0.4247425010840047 0 TE{I|L} 2.385 - 33 NaN NaN 112139.5 NaN 11294 3097 14384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14395 63.394 NaN 2803500 35 0 302290 0.326 + 16476 LSVMTSKRN 9 120 526.2815928167875 1050.5486327003748 2 526.2819213867188 MULTI HCD FTMS 0 0 0 14394 2061103.625 0.550978927519038 7 -0.21120834350585938 1 Oxidation (M) _LSVM(Oxidation (M))TSKRN_ REV__ENSG00000106078|ENST00000265136|COBL;REV__nc|ENSG00000106078|O75128-3|COBL 52.268347100219714 0.028397529699942435 1 {[RE]|[WV]}YVVWS 7 -1 66.807 0 0 6.3592 0 0 0 128.06909532786236 128.06909532786236 24.28108311137678 0 0 0 0 1.7302046884880937 0.9208187539523752 1.6351518780601921 0 {[RE]|[WV]}YVVWS 6.3592 - 11041 NaN NaN 504117.7 NaN 11295 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14396 63.398 NaN 571220 35 0 114230 0.261 + 8373 GYMEGYYTF 9 87 573.7256388277112 1145.4367247222224 2 573.7257080078125 MULTI HCD FTMS 0 0 0 14394 339502.1875 0.7824623262374406 -2 0.0623321533203125 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 120.45040980043947 0.0012363446172167195 1 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 93.58 0 0 8.1698 8.1698 95.652 0 0 0 7.147642715192504 68.42986265876426 7.147642715192504 30.74031267727719 0 2.9247425010840047 1.3010299956639813 0.75 0 [YT]CEGYYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GYYT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[YQ]{I|L}[MN]DDT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]E{M(Oxidation (M))|F}[YG];{[YD]|[{M(Oxidation (M))|F}M]}[QT]AAEE[YG];[{M(Oxidation (M))|F}T]Y[YG]{M(Oxidation (M))|F}E[YG];[{M(Oxidation (M))|F}T][VG][MN]EE[YG] 8.1698;5.4861;5.2939;4.1308;2.6971;2.0608;1.534;1.2484;0.95101;0.72233 -;-;-;-;-;-;-;-;-;- 1296 NaN NaN 165945.5 NaN 11296 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14397 63.402 NaN 447200 35 0 64369 0.261 + 5156 FFDAELSQM 9 73 552.2393276201218 1102.4641023070435 2 552.2391967773438 MULTI HCD FTMS 0 0 0 14394 209894.984375 0.03305961518334152 41 -1.1697769165039062 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 106.94017166704063 0.003441928997083001 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 76.609 0 0 6.9489 6.9489 89.671 0 0 0 0.3609802330361589 55.45039703980876 0.3609802330361589 9.208187539523749 0 2.274227503252014 0 1.0044321917401078 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAV[YE];{[QS]|[NT]}PY{[MS]|[{M(Oxidation (M))|F}A]}V[YE];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D{[NV]|[RG]}AV[YE];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAAAAV[YE] 6.9489;6.1137;1.9826;1.175;0.87074;0.80492 +;-;-;-;-;- + 634 NaN NaN 148422.9 NaN 11297 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14398 63.405 NaN 454900 35 0 87575 0.263 + -1 AMRKKHGHYF 10 46 430.8881280827447 NaN 0 430.8881530761719 PEAK HCD FTMS 0 0 0 14394 141434.546875 0.5500922572351222 -246 6.2154541015625 4 Oxidation (M) _AM(Oxidation (M))RKKHGHYF_ REV__ENSG00000221843|ENST00000447166|C2orf16;REV__nc|ENSG00000221843|Q68DN1|SPATA31H1 0.776531954647913 0.3395196853010637 1 {M(Oxidation (M))|F} 1 -1 0.27759 0 0 0.032286 0 0 308.5022560660769 401.18174158267817 709.683997648755 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.032286 + + 1 + NaN NaN 152210.5 NaN 11298 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14399 63.408 NaN 154270 35 0 35352 0.261 + 1801 CNPHCPHC 8 37 455.66015915616333 909.3057653791267 2 455.66033935546875 MULTI HCD FTMS 0 0 0 14394 70364.8046875 0.4752349714712173 7 -0.21120834350585938 5 Unmodified _CNPHCPHC_ REV__ENSG00000178568|ENST00000342788|ERBB4;REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF;REV__nc|ENSG00000178568|Q15303-2|ERBB4;REV__nc|ENSG00000178568|Q15303-3|ERBB4;REV__nc|ENSG00000178568|Q15303-4|ERBB4 0.6903765706972694 0.5409681170271811 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.2264939941642 0 744.2264939941642 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 11 + NaN NaN 103832.1 NaN 11299 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14400 63.412 NaN 94279 35 0 13124 0.261 -1 EKVLTCSF 8 32 492.2469272781806 982.4793016231612 2 492.2467956542969 MULTI HCD FTMS 0 0 0 14394 39671.765625 0.6579828584497192 -2 0.0623321533203125 6 Carbamidomethyl (C) _EKVLTC(Carbamidomethyl (C))SF_ ENST00000284000.8_1_19:33873367-33873568:+|nuORF 8.593279151180031 0.5292430274356741 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7293 0 0 817.4006711073393 0 817.4006711073393 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7293 + + 2 + NaN NaN 103632 NaN 11300 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14401 63.415 NaN 130450 35 0 13294 0.261 -1 SSMLEPLAL 9 50 488.7544496268399 NaN 0 488.7544250488281 PEAK HCD FTMS 0 0 0 14394 52068.69921875 0.669175121978892 5 -0.15226364135742188 7 Oxidation (M) _SSM(Oxidation (M))LEPLAL_ ENSG00000070601|ENST00000377765|FRMPD1;nc|ENSG00000070601|Q5SYB0-2|FRMPD1;nc|ENSG00000070601|Q5SYB0-3|FRMPD1 11.640296217721598 0.23883959125015683 1 A 1 -1 8.0989 0 0 0.83024 0 0 131.09291358165018 770.341893367163 901.4348069488133 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.83024 + + 9 + NaN NaN 96924.5 NaN 11301 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14402 63.418 NaN 107660 35 0 12052 0.261 + 31171 VVDHPALAF 9 39 484.7637875953961 NaN 0 484.7647399902344 PEAK HCD FTMS 0 0 0 14394 56896.48828125 1 0 0 8 Unmodified _VVDHPALAF_ ENSG00000197147|ENST00000330947|LRRC8B 12.531546534597751 0.23452071659215576 1 A 1 8 16.99 0 0 1.756 0 0 731.3969771909891 162.0561922662719 893.453169457261 0 0 0 0 0 1 0 0 0 + A 1.756 + + 32 + NaN NaN 99819.2 NaN 11302 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14403 63.422 NaN 212200 35 0 28863 0.261 + 3205 EDEFSDEEDF 10 60 631.2237453921508 1260.4329378511015 2 631.7264404296875 MULTI HCD FTMS 0 0 0 14394 38677.78125 0.8160646224484877 -2 0.0623321533203125 9 Unmodified _EDEFSDEEDF_ ENSG00000067334|ENST00000436063|DNTTIP2 1.7422754331352037 0.46608156381052757 1 D{M(Oxidation (M))|F} 2 8 17.959 0 0 1.4248 0 0 980.3327503888687 0 980.3327503888687 0 10.740312677277187 0 0 0 0 0 0 0 + D{M(Oxidation (M))|F} 1.4248 + + 8 NaN NaN 117987.8 NaN 11303 3098 14394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14405 63.427 NaN 1540200 35 0 331300 0.326 + 6561 FPLDLDVKM 9 96 547.2833211479854 1092.5520893627706 2 547.77099609375 MULTI HCD FTMS 0 0 0 14404 114117.8359375 0.19837362258298455 20 -0.5600357055664062 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 74.19965305603844 0.007729275404663812 1 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 62.472 0 0 5.718 5.718 83.02 0 0 0 41.58182379530109 14.973024840566467 14.973024840566467 0.9421249706470292 0 2.0233623702246373 0 0 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}SGVV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}SG{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}SGVV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[TA]A[{I|L}P]VV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}E]{I|L}P[KS]E 5.718;5.6318;4.7976;4.1947;4.1085;3.8835;3.7508;2.9544;2.7141;2.2531 +;-;-;-;-;-;+;-;-;- + 1023 + NaN NaN 316848.9 NaN 11304 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14406 63.431 NaN 821910 35 0 426330 0.262 -1 0 64 427.30247491207956 852.5903968909591 2 427.3025817871094 MULTI HCD FTMS 0 0 0 14404 643266.0625 0.3351029116629311 -28 0.7177200317382812 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8162 0 0 687.5114306817779 0 687.5114306817779 0 2.7203402217513784 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8162 - 20 + NaN NaN 202931.3 NaN 11305 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14407 63.435 NaN 424470 35 0 24941 0.261 + 4411 EYFKSFNF 8 71 541.2527773824336 1080.491001831667 2 541.2522583007812 MULTI HCD FTMS 0 0 0 14404 144004.953125 0.488322054696971 2 -0.06566619873046875 3 Unmodified _EYFKSFNF_ ENSG00000151470|ENST00000425929|C4orf33 29.081581746732265 0.3711897268585781 1 N{M(Oxidation (M))|F}SRNN{M(Oxidation (M))|F} 7 5 47.871 0 0 4.4305 0 0 183.09520198148067 0 183.09520198148067 0 25.40705219359991 0 0 0 0.3252574989159953 0 0 0.6694451763165201 N{M(Oxidation (M))|F}SRNN{M(Oxidation (M))|F} 4.4305 - 495 + NaN NaN 145021.2 NaN 11306 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14408 63.438 NaN 351200 35 0 34398 0.261 + 12458 KQPEDYFYL 9 61 601.7905165613729 1201.5664801895457 2 601.7913208007812 MULTI HCD FTMS 0 0 0 14404 222308.953125 0.39835682746562395 6 -0.17841720581054688 4 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 26.268140514670165 0.13340543277302316 1 {M(Oxidation (M))|F}Y{I|L} 3 6 35.005 0 0 2.9133 0 0 760.3378958685581 0 760.3378958685581 0 1.8297591317234208 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F}Y{I|L} 2.9133 + + 100 NaN NaN 131432.7 NaN 11307 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14409 63.441 NaN 295410 35 0 23123 0.261 + 16819 LYECTGQFDF 10 63 611.7577778575575 1221.5010027819148 2 611.7576293945312 MULTI HCD FTMS 0 0 0 14404 129805.390625 0.5937387859377974 2 -0.06566619873046875 5 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 24.990960013464015 0.27735500881591096 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 65.195 0 0 5.3373 5.3373 86.095 0 0 0 4.884381005764311 56.15356566548286 4.884381005764311 9.164539485499255 0 2.3494850021680094 0 0 0.805462187404089 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][CS]{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][CS][DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.3373;4.587;4.3557;3.8825;3.5954;3.0607;2.946;2.901;2.8416;2.3068 -;-;-;-;-;-;-;-;-;- 291 NaN NaN 146535.9 NaN 11308 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14410 63.445 NaN 209980 35 0 16601 0.261 + 18312 MPEQWARLL 9 67 580.2999690774157 1158.5853852216312 2 580.3003540039062 MULTI HCD FTMS 0 0 0 14404 91938.6015625 0.48870818548994277 6 -0.17841720581054688 6 Oxidation (M) _M(Oxidation (M))PEQWARLL_ ENSG00000149269|ENST00000356341|PAK1;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;nc|ENSG00000149269|Q13153-2|PAK1;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant 49.55428908609986 0.03219431099695407 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQWAR{I|L}{I|L} 9 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} + + 47.846 3.7236 1.5256 4.1297 4.1297 60.249 0 0 0 0 38.66525065095942 0 0 0 1.8505762035186217 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQWAR{I|L}{I|L} 4.1297 + + 62 + NaN NaN 129888.3 NaN 11309 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14411 63.448 NaN 342900 35 0 20564 0.263 + -1 MDADEMDMKMT 11 69 450.4951087704536 1348.463496911561 3 450.49517822265625 MULTI HCD FTMS 0 0 0 14404 109123.2734375 0.5957609623159021 -1 0.0327911376953125 7 2 Oxidation (M) _MDADEMDM(Oxidation (M))KM(Oxidation (M))T_ REV__ENSG00000057657|ENST00000369096|PRDM1 2.6312355333042263 0.4073809613003177 1 [YT]GT 4 -1 33.43 0 0 2.4791 0 0 0 923.2604689176734 923.2604689176734 20.66565281547536 0 0 0 0 0 1.6989700043360187 0.3252574989159953 0 [YT]GT 2.4791 - 79 NaN NaN 138679.5 NaN 11310 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14412 63.451 NaN 104550 35 0 22104 0.261 + 35193 YVLDSWCHLI 10 46 624.8078943265688 1247.6012357199374 2 624.8088989257812 MULTI HCD FTMS 0 0 0 14404 42856.125 0.6166724636325639 1 -0.032886505126953125 8 Unmodified _YVLDSWCHLI_ REV__ENST00000549479.1_1_12:76462365-76462575:-|nuORF 6.723162845929126 0.4397169348982109 1 [YV]{I|L} 3 -1 34.705 0 0 2.7817 0 0 0 869.3618258111936 869.3618258111936 31.2101498947667 0 0 0 0 0.4247425010840047 2 0 0 [YV]{I|L} 2.7817 + + 20 + NaN NaN 109756.5 NaN 11311 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14413 63.455 NaN 105480 35 0 7339.1 0.264 + 34631 YPQQQQAL 8 57 488.2504360987729 NaN 0 488.25018310546875 PEAK HCD FTMS 0 0 0 14404 11820.8896484375 0.2199934274174905 1 -0.032886505126953125 9 Unmodified _YPQQQQAL_ REV__ENST00000511473.5_1_5:180666163-180666565:-|nuORF 14.581692164780916 0.38795613832665576 1 P 1 -1 8.9794 0 0 0.92145 0 0 163.06328724083204 711.3492778992891 874.4125651401212 0 0 0 0 0 0.3494850021680094 0 0 0 P 0.92145 + + 3 + NaN NaN 102290.5 NaN 11312 3099 14404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14415 63.459 NaN 1166000 35 0 129530 0.327 + 1278 AYMPHTFFI 9 101 571.7703588933117 1141.5261648534233 2 571.7702026367188 MULTI HCD FTMS 0 0 0 14414 606952.8125 0.6809954470316226 -5 0.154205322265625 1 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 117.59872219059416 0.0017018906413822257 1 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L} 8 1 90.417 0 0 7.9208 0 0 0 162.05585657291252 162.05585657291252 48.742209500285014 0 0 0 0 2.4604093769761874 2 0.75 0 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L} 7.9208 - 2383 + NaN NaN 275640.5 NaN 11313 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14416 63.464 NaN 680370 35 0 57620 0.261 + 6720 FPQDRVFML 9 100 584.7944593895264 1167.5743658458528 2 584.7946166992188 MULTI HCD FTMS 0 0 0 14414 543623.1875 0.9291417555859787 -5 0.154205322265625 2 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 90.13494162714682 0.004522430935000059 1 {I|L}MQDRV{M(Oxidation (M))|F} 7 4 86.873 0 0 7.4404 0 0 0 275.1068514459594 275.1068514459594 65.90366047130118 0 0 0 0 2.586696871556164 2 1.0484550065040281 0.3054621874040891 {I|L}MQDRV{M(Oxidation (M))|F} 7.4404 - 635 + NaN NaN 203183.9 NaN 11314 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14417 63.467 NaN 349360 35 0 30380 0.261 + 12459 KQPEDYFYL 9 76 601.7905165613729 1201.5664801895457 2 601.7896728515625 MULTI HCD FTMS 0 0 0 14414 220035.109375 0.3942823123834841 7 -0.20774459838867188 3 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 32.78568957990786 0.09846250359632436 1 [KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L} 9 0 + 36.915 0 0 3.0722 3.0722 80.401 0 0 0 2.2223466744143465 -3.789850105233292 -3.789850105233292 2.9833247972062864 0 1.274227503252014 0 0.3807196863200844 0.3252574989159953 + + [KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L};[KQ][EP][QP]EEA{M(Oxidation (M))|F};[KQ][EP][QP]ES{M(Oxidation (M))|F}{I|L};[KQ][EP][QP]ES{I|L}{M(Oxidation (M))|F} 3.0722;2.824;2.5734;2.3229 +;-;-;- + 54 NaN NaN 142019.1 NaN 11315 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14418 63.471 NaN 1351800 35 0 116030 0.261 + 6734 FPQEVKDLL 9 102 544.8028953888972 1087.5912378445944 2 544.8029174804688 MULTI HCD FTMS 0 0 0 14414 418392.5625 0.4871785504302878 -5 0.154205322265625 4 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 103.82355648334675 0.003950725192926219 1 {M(Oxidation (M))|F}PQEVKD{I|L}{I|L} 9 0 + 74.558 0 0 6.8553 6.8553 87.865 0 0 0 21.227248456092468 2.086487901398698 2.086487901398698 7.250298905040097 0 2.368415180652539 0 1.2302046884880937 0.7302046884880937 + + {M(Oxidation (M))|F}PQEVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}QPE;{M(Oxidation (M))|F}P[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V]QPE;{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}[AG]PE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V][AG]PE;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}V{M(Oxidation (M))|F}QPE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}N{I|L}{I|L}PE;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}[{I|L}V]QPE;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}K[{I|L}V]QPE 6.8553;6.1887;6.0087;5.9078;5.342;5.0611;4.9256;4.7649;4.6447;4.6002 +;-;-;-;-;-;-;-;-;- + 3317 + NaN NaN 301976.9 NaN 11316 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14419 63.474 NaN 245070 35 0 12299 0.261 + 6955 FPVQSLVQL 9 79 515.8004476549919 1029.5863423767837 2 515.7999267578125 MULTI HCD FTMS 0 0 0 14414 144442.90625 0.17464570956288897 21 -0.5828056335449219 5 Unmodified _FPVQSLVQL_ REV__ENSG00000137948|ENST00000399546|BRDT;REV__nc|ENSG00000137948|Q58F21-2|BRDT;REV__nc|ENSG00000137948|Q58F21-3|BRDT;REV__nc|ENSG00000137948|Q58F21-4|BRDT;REV__nc|ENSG00000137948|Q58F21-5|BRDT 31.26834338654808 0.10542797264966089 1 {I|L}Q{I|L} 3 -1 29.807 0 0 2.8951 0 0 657.3489672158842 0 657.3489672158842 0 3.085163917663408 0 0 0 0.5994850021680094 0 0 0 {I|L}Q{I|L} 2.8951 - 182 NaN NaN 118447.3 NaN 11317 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14420 63.477 NaN 107850 35 0 14522 0.261 + 18279 MPDVDLHL 8 33 470.23380515187733 938.4530573705547 2 470.2339172363281 MULTI HCD FTMS 0 0 0 14414 73462.78125 0.05602298659047239 22 -0.6090202331542969 6 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 1 MP 2 6 20.969 0 0 2.2344 0 0 0 707.3367403619749 707.3367403619749 11.365006360318688 0 0 0 0 0 0 0 0 + MP 2.2344 + + 13 + NaN NaN 94127.9 NaN 11318 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14421 63.481 NaN 149480 35 0 12954 0.261 -1 MAEPPRMMDF 10 41 620.7629519354753 1239.5113509377504 2 620.7631225585938 MULTI HCD FTMS 0 0 0 14414 103734.2734375 0.6799080571692734 3 -0.08658599853515625 7 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 15.248480904072842 0.3684828712757339 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.7868 0 0 698.2960889022831 0 698.2960889022831 0 41.453650195120844 0 0 0 1.5 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7868 - 68 NaN NaN 103810.2 NaN 11319 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14422 63.484 NaN 147900 35 0 9784.9 0.263 + 25938 SPDAKIFCL 9 53 497.2576008362225 992.500648739245 2 497.25762939453125 MULTI HCD FTMS 0 0 0 14414 115094.703125 0.4184523458530557 7 -0.20774459838867188 8 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 53.40400417844725 0.026808823219830042 1 [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 80.045 0 0 8.0649 8.0649 92.454 0 0 0 9.771212547196626 16.478174818886373 9.771212547196626 9.771212547196626 0 2 1.6989700043360187 0.5941876774005248 0 + + [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L};[DP]SA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 8.0649;7.0804 +;- + 70 NaN NaN 121531 NaN 11320 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14423 63.487 NaN 308520 35 0 70958 0.261 + 14173 LAIETEAEL 9 59 494.7634591850468 987.5123654368937 2 494.7635192871094 MULTI HCD FTMS 0 0 0 14414 217758.328125 0.7443327181002125 -5 0.154205322265625 9 Unmodified _LAIETEAEL_ ENSG00000013364|ENST00000357402|MVP 96.28474662873226 0.004361282420133734 1 {[QN]|[E{I|L}]|[KN]}A{I|L}TEAE{I|L} 9 2 + 82.005 0 0 8.3042 8.3042 88.46 0 0 0 3.0102999566398125 16.478174818886373 3.0102999566398125 3.0102999566398125 0 1.8494850021680094 0 1.4916440611282626 0 {[QN]|[E{I|L}]|[KN]}A{I|L}TEAE{I|L};{[CP]|[EA]}{I|L}{I|L}TEAE{I|L} 8.3042;7.9994 -;- 181 NaN NaN 128880.2 NaN 11321 3100 14414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14425 63.492 NaN 1964000 35 0 225830 0.327 + 13261 KYMDINFDF 9 90 604.7680082675702 1207.5214636019402 2 604.7684936523438 MULTI HCD FTMS 0 0 0 14424 1301130.25 0.4782033152968395 3 -0.08991622924804688 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 117.83759599426817 0.001662893820975323 1 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 85.531 0 0 7.0832 7.0832 88.419 0 0 0 3.2568864632742844 38.22682509756042 3.2568864632742844 7.570071809000609 0 2.5994850021680094 0 0.6861818737241735 1.1861818737241734 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}DY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}GG{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}DK{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 7.0832;6.4562;6.3206;5.6937;5.4644;5.3186;5.2595;4.9235;4.7019;4.387 +;-;-;-;-;-;-;-;-;- + 4408 NaN NaN 338616.8 NaN 11322 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14426 63.497 NaN 1757500 35 0 210910 0.262 + 26808 SYIDVAVKL 9 90 504.2924133963365 1006.570273859473 2 504.79388427734375 MULTI HCD FTMS 0 0 0 14424 350739.59375 0.5679365701685604 -2 0.06566619873046875 2 Unmodified _SYIDVAVKL_ ENSG00000087301|ENST00000281741|TXNDC16 96.36657018975838 0.004359138328518304 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVAVK{I|L} 9 0 + 81.353 0 0 8.0822 8.0822 88.885 0 0 0 4.762036441594191 69.13479704297593 4.762036441594191 4.771212547196626 0 2.610924374808178 0 1.1421590589602533 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVAVK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVAV{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVG{I|L}K{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVG{I|L}{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D[K{I|L}][VG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D[KG][{I|L}V]{I|L};[K{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}D]|MM}K{I|L};[K{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}D]|MM}{I|L}K 8.0822;7.6082;7.0267;6.5527;2.2677;2.0263;1.1395;0.66548 +;-;-;-;-;-;-;- + 366 NaN NaN 350359.4 NaN 11323 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14427 63.5 NaN 596750 35 0 57958 0.261 + 32032 VYPMPQDFVP 10 82 596.7906028417493 NaN 0 596.8037719726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VYPMPQDFVP_ ENSG00000282815|ENST00000695840|TEX13C 11.640296217721598 0.3302218087712401 1 PVD{I|L}GG 6 8 38.321 0 0 3.216 0 0 165.05270231388323 485.2150057428344 650.2677080567177 0 0 0 0 0 0 0 0.6549471895720984 0 PVD{I|L}GG 3.216 - 1713 + NaN NaN 178573 NaN 11324 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14428 63.504 NaN 550060 35 0 46636 0.261 + 6896 FPVEHVQLL 9 86 541.3054706011272 1080.5963882690544 2 541.3054809570312 MULTI HCD FTMS 0 0 0 14424 224333.921875 0.486627033421062 -4 0.1312713623046875 4 Unmodified _FPVEHVQLL_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 57.72198328787511 0.020768266150574023 1 VEHVQ{I|L}{I|L} 7 2 47.956 0 0 4.4379 0 0 244.12114150215 0 244.12114150215 0 18.93253245374254 0 0 0 1.4291746928241125 0 0 0 + VEHVQ{I|L}{I|L} 4.4379 + + 410 NaN NaN 159155.8 NaN 11325 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14429 63.507 NaN 417460 35 0 43130 0.261 + 20020 NYIGLINRI 9 65 538.3164166178896 1074.618280302579 2 538.316162109375 MULTI HCD FTMS 0 0 0 14424 160590.59375 0.02522266371013347 37 -1.0384902954101562 5 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 78.7280429016045 0.006263961847259105 1 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 79.86 0 0 7.4315 7.4315 94.136 0 0 0 15.669015600442577 15.669015600442577 15.669015600442577 24.877203139966326 0 2.3737125054200234 1.6989700043360187 0 0.9802046884880937 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L} 7.4315;5.1165;4.6 +;-;- + 148 NaN NaN 153050.3 NaN 11326 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14430 63.51 NaN 258730 35 0 64080 0.261 -1 EDYVMAVV 8 52 471.2177538821417 940.4209548310835 2 471.2179260253906 MULTI HCD FTMS 0 0 0 14424 136574.671875 0.7625468119703597 -4 0.1312713623046875 6 Oxidation (M) _EDYVM(Oxidation (M))AVV_ ENSG00000131711|ENST00000296755|MAP1B 14.581692164780916 0.48650662947107914 1 VV 2 -1 25.217 0 0 2.6814 0 0 724.2749641767111 0 724.2749641767111 0 18.935078169319297 0 0 0 0.4247425010840047 0 0 0 VV 2.6814 + + 22 NaN NaN 137477.6 NaN 11327 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14431 63.514 NaN 579840 35 0 70535 0.261 + 32390 VYWKIYNSI 9 75 593.3187552170008 1184.6229575008015 2 593.3192138671875 MULTI HCD FTMS 0 0 0 14424 172611.171875 0.4984434126653392 -4 0.1312713623046875 7 Unmodified _VYWKIYNSI_ ENSG00000115524|ENST00000335508|SF3B1 128.93241758739586 0.0006697181619526092 1 VYWK{I|L}YNS{I|L} 9 0 + 106 0 0 8.9482 8.9482 90.067 0 0 0 4.424712680444358 4.424712680444358 4.424712680444358 4.424712680444358 0 3.1237125054200234 2 1.4361818737241734 0.6861818737241735 + + VYWK{I|L}YNS{I|L};[YV]WK{I|L}YNS{I|L};VYWK{I|L}YGGS{I|L};[YV]WK{I|L}YGGS{I|L};[YV]WY[K{I|L}]NS{I|L};[YV]WY[K{I|L}]GGS{I|L};[YV]WYV[KQ]S{I|L};[YV]WK{[QS]|[NT]}[YV]{I|L};[YV]{[QS]|[NT]}V{I|L}Y[WK];[WK][YV]{I|L}YNS{I|L} 8.9482;8.5747;7.9502;7.7974;6.1262;5.3488;5.2594;4.9483;4.3765;4.3743 +;+;-;-;-;-;-;-;-;- + 743 + NaN NaN 169585.9 NaN 11328 3101 14424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14433 63.518 NaN 4959400 35 0 955170 0.327 + 29076 TYGEIFEKF 9 122 567.2791460627044 1132.5437391922087 2 567.2796020507812 MULTI HCD FTMS 0 0 0 14432 3309343.5 0.1342198426663831 18 -0.4943885803222656 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 148.26817274609934 1.0657023776783114E-05 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 115.67 0 0 10.214 10.214 98.058 0 0 0 49.67379235157807 16.478174818886373 16.478174818886373 32.94531259372398 0 2.6237125054200234 2 1.214559192431053 0.25 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]GE[{M(Oxidation (M))|F}E]{I|L}K{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPYT{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[CA]|SS}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT][TP]{M(Oxidation (M))|F}TEK{M(Oxidation (M))|F};[YT]GE[{M(Oxidation (M))|F}E]{I|L}{M(Oxidation (M))|F}K 10.214;7.3047;6.8071;6.7659;6.4531;6.2252;5.6097;5.5766;5.5638;5.1932 +;-;-;-;-;-;-;-;-;- + 9356 + NaN NaN 537418 NaN 11329 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14434 63.523 NaN 541940 35 0 76856 0.261 + 29459 TYVENLRLL 9 70 560.8217495275421 1119.6289461218842 2 560.8220825195312 MULTI HCD FTMS 0 0 0 14432 180653.984375 0.11057691498435646 11 -0.315338134765625 2 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 121.5340881639634 0.001118397630175091 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 102.87 0 0 9.1876 9.1876 95.285 0 0 0 18.80362997901186 16.478174818886373 16.478174818886373 14.208187539523749 0 2.805462187404089 2 1.360924374808178 1.1694451763165201 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]GG{I|L}R{I|L}{I|L} 9.1876;7.9186;5.0157;4.1933 +;-;-;- + 345 NaN NaN 183116.4 NaN 11330 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14435 63.526 NaN 557250 35 0 135950 0.261 + 16384 LSFSLRTVF 9 69 535.3056431478079 1068.5967333624158 2 535.305419921875 MULTI HCD FTMS 0 0 0 14432 115544.0625 0.02057693028603403 29 -0.8246421813964844 3 Unmodified _LSFSLRTVF_ REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF 36.12702656103203 0.08312389501731911 1 ATV{M(Oxidation (M))|F} 4 -1 56.67 0 0 5.3032 0 0 632.3681372768579 0 632.3681372768579 0 26.993471026770948 0 0 0 1.8494850021680094 0 0.9247425010840047 0 ATV{M(Oxidation (M))|F} 5.3032 - 387 NaN NaN 173838.1 NaN 11331 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14436 63.53 NaN 445630 35 0 48951 0.261 + 27075 SYMGHFDLL 9 90 549.7497688734081 1097.4849848136162 2 549.7498779296875 MULTI HCD FTMS 0 0 0 14432 123210.1953125 0.01189490134348165 116 -3.1567115783691406 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 71.13359017698441 0.008721403657255008 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 39.536 0 0 3.6024 3.6024 86.682 0 0 0 4.762036441594198 19.358500049694534 4.762036441594198 15.441380936008098 0 1.274227503252014 0 0.7742275032520141 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[QV]|[N{I|L}]|[RA]|[KV]}[WP]G{M(Oxidation (M))|F};[YT]V[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]};[Y{I|L}]S[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]{I|L}{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]} 3.6024;2.1954;1.6615;0.93857;0.55043;0.17211;0.12039 +;-;-;-;-;-;- + 339 NaN NaN 162964.2 NaN 11332 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14437 63.533 NaN 646680 35 0 107840 0.261 + 2234 DLADYFEKF 9 96 574.2688723278808 1146.5231917225615 2 574.2687377929688 MULTI HCD FTMS 0 0 0 14432 122554.6015625 0.2313711915688143 15 -0.416046142578125 5 Unmodified _DLADYFEKF_ tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 19.256988751693697 0.19398022840297344 1 T[{I|L}P]GEGYYT{M(Oxidation (M))|F} 10 8 + 57.948 0 0 5.0542 5.0542 88.893 0 0 0 6.478362010071585 8.289470844121269 6.478362010071585 16.331830406279394 0 0.3494850021680094 0 1.3129529932484498 0 T[{I|L}P]GEGYYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SMGY[W{I|L}]{I|L};T[{I|L}P]G{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};T{[RE]|[WV]}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GEKGEG[RH];[YT]CEG[KP]G[RH];{[YD]|[{M(Oxidation (M))|F}M]}SMG[KP]G[RH];{[YD]|[{M(Oxidation (M))|F}M]}S{[QV]|[N{I|L}]|[RA]|[KV]}G{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EG[KP]G[RH];T[{I|L}P]GEGKED{[DS]|[MA]|[CV]|TT} 5.0542;3.6298;3.5301;3.1173;2.5788;2.3859;2.2993;2.1012;2.0543;2.0375 -;-;-;-;-;-;-;-;-;- 1427 + NaN NaN 182300.8 NaN 11333 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14438 63.536 NaN 217440 35 0 36162 0.261 + -1 ICVLCGPDMTF 11 47 607.7666106090023 1213.5186682848046 2 607.7671508789062 MULTI HCD FTMS 0 0 0 14432 58406.72265625 0.23661107385301053 5 -0.14881515502929688 6 Oxidation (M) _ICVLCGPDM(Oxidation (M))TF_ REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF 13.042465956692817 0.3434429782671734 1 MPWT{M(Oxidation (M))|F} 5 -1 49.38 0 0 4.0692 0 0 533.2275257794937 0 533.2275257794937 0 49.38039076304328 0 0 0 1 0 0.3807196863200844 0 MPWT{M(Oxidation (M))|F} 4.0692 - 53 NaN NaN 115107.6 NaN 11334 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14439 63.541 NaN 231940 35 0 26988 0.261 + 35723 YYLNDLERI 9 72 599.808710876716 1197.6028688202318 2 599.8087158203125 MULTI HCD FTMS 0 0 0 14432 70296.484375 0.04087175402520425 20 -0.5500907897949219 7 Unmodified _YYLNDLERI_ ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2 51.487983226225225 0.029489205318603332 1 YY{I|L}ND{I|L}ER{I|L} 9 0 + 88.225 0 0 7.3668 7.3668 90.45 0 0 0 68.40469588669954 9.009461452434238 9.009461452434238 9.208187539523749 0 2.0768323252109075 2 0 0.3054621874040891 + + YY{I|L}ND{I|L}ER{I|L};YY{I|L}GGD{I|L}ER{I|L};YY{I|L}E{[NV]|[RG]}ER{I|L};YY{I|L}NDVVN[KA];YY{I|L}NDVVGG[KA];YY{I|L}GGDVVN[KA] 7.3668;6.5979;5.0398;3.2923;2.5271;2.5271 +;-;-;-;-;- + 347 + NaN NaN 117767.2 NaN 11335 3102 14432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14441 63.546 NaN 1457600 35 0 166620 0.327 + 10899 IWPLHWSL 8 96 526.2916519279357 NaN 0 526.2822265625 PEAK HCD FTMS 0 0 0 14440 100789.359375 0.9719594919878558 -1 0.02765655517578125 1 Unmodified _IWPLHWSL_ REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|26 32.116972079565 0.3772972708913157 1 VSWVYV 6 -1 27.216 0 0 2.5906 0 0 131.1125132201259 183.05636011295158 314.1688733330775 0 0 0 0 0 0 0 0.7742275032520141 0 VSWVYV 2.5906 - 2431 + NaN NaN 308521.2 NaN 11336 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14442 63.55 NaN 441650 35 0 38644 0.261 + 7036 FPYVRDFVM 9 79 595.2891396629333 1188.5637263926665 2 595.2891235351562 MULTI HCD FTMS 0 0 0 14440 253620.703125 0.6672486830124535 4 -0.12115859985351562 2 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 61.60191391372663 0.015340508911304802 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 79.575 0 0 6.6951 6.6951 86.554 0 0 0 18.680540824916392 10 10 4.771212547196626 0 1.9247425010840047 2 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{M(Oxidation (M))|F}PYVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{M(Oxidation (M))|F}PYV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};[YV]{M(Oxidation (M))|F}PRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6951;6.2936;5.1234;4.3834;4.3642;4.3384;3.937;3.9231;3.6484;3.621 -;+;+;-;-;-;-;-;-;- + 727 NaN NaN 171936.6 NaN 11337 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14443 63.554 NaN 432700 35 0 56541 0.261 + 5157 FFDAELSQM 9 63 552.2393276201218 1102.4641023070435 2 552.2396240234375 MULTI HCD FTMS 0 0 0 14440 187558.296875 0.029541463973490563 46 -1.2825050354003906 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 96.36657018975838 0.004359138328518304 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 76.864 0 0 6.972 6.972 89.71 0 0 0 3.8946154301689972 54.03266562845701 3.8946154301689972 9.208187539523749 0 2.7302046884880937 0 0.75 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};{[QS]|[NT]}PY{[CP]|[EA]}[YV]{M(Oxidation (M))|F} 6.972;6.1367;1.5028;0.78376 +;-;-;- + 388 NaN NaN 164665.7 NaN 11338 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14444 63.557 NaN 191790 35 0 9431.4 0.261 -1 APFKFDMEL 9 74 557.268033382246 1112.521513831292 2 557.783935546875 MULTI HCD FTMS 0 0 0 14440 21645.580078125 0.03592289783242363 58 -1.6070899963378906 4 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 23.789781309258295 0.1548179064208189 1 {M(Oxidation (M))|F}E{I|L} 3 -1 23.06 0 0 2.0727 0 0 705.35063368965 0 705.35063368965 0 2.8946809624041236 0 0 0 0.3807196863200844 0 0.3054621874040891 0 {M(Oxidation (M))|F}E{I|L} 2.0727 + + 397 NaN NaN 104999.6 NaN 11339 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14445 63.561 NaN 356240 35 0 38633 0.261 + 6622 FPLSESQTL 9 60 511.26402506068985 NaN 0 511.2633056640625 PEAK HCD FTMS 0 0 0 14440 115641.78125 0.9763180920974958 -2 0.053806304931640625 5 Unmodified _FPLSESQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 22.736283301280096 0.1690317064107932 1 {I|L}Q{I|L} 3 6 13.43 0 0 1.316 0 0 132.0067381125496 531.2575777643186 663.2643158768683 0 0 0 0 0 0 0 0 0.3252574989159953 {I|L}Q{I|L} 1.316 - 72 + NaN NaN 136907.4 NaN 11340 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14446 63.564 NaN 435150 35 0 39716 0.261 + 35922 YYTKGFALL 9 63 538.2949111235207 1074.5752693138413 2 538.2953491210938 MULTI HCD FTMS 0 0 0 14440 47997.03515625 0.04368576856717187 29 -0.8264350891113281 6 Unmodified _YYTKGFALL_ ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 22.736283301280096 0.1639198954644489 1 [YN]{I|L}G{I|L}{I|L} 6 5 36.647 0 0 3.4104 0 0 0 398.1747210682519 398.1747210682519 10.215752168950168 0 0 0 0 0 1.6989700043360187 0 0.7059771852360797 [YN]{I|L}G{I|L}{I|L} 3.4104 - 307 NaN NaN 152933.8 NaN 11341 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14447 63.567 NaN 233060 35 0 20032 0.261 + 34141 YPAHFGQLECL 11 62 639.3025581268515 1276.590563320503 2 639.8038940429688 MULTI HCD FTMS 0 0 0 14440 70211.59375 0.8404435577802585 -2 0.053806304931640625 7 Unmodified _YPAHFGQLECL_ ENSG00000166747|ENST00000299980|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF;nc|ENSG00000166747|O43747-2|AP1G1 19.361941925380144 0.2883811769592959 1 Y{M(Oxidation (M))|F}{[QG]|[NA]}{I|L}EC{I|L} 8 3 48.933 0 0 3.8331 0 0 305.1496754376969 0 305.1496754376969 0 41.48570980063916 0 0 0 0.8807196863200843 0 0 0.3494850021680094 Y{M(Oxidation (M))|F}{[QG]|[NA]}{I|L}EC{I|L} 3.8331 - 213 NaN NaN 119246.4 NaN 11342 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14448 63.571 NaN 226950 35 0 31738 0.261 + 35827 YYPYVYYKI 9 40 636.3210192449217 1270.6274855566433 2 636.8235473632812 MULTI HCD FTMS 0 0 0 14440 43924.50390625 0.6816679399183624 4 -0.12115859985351562 8 Unmodified _YYPYVYYKI_ ENSG00000155097|ENST00000518738|ATP6V1C1 16.942295170755138 0.21397866736869717 1 YYK 3 6 32.447 0 0 2.5536 0 0 0 813.3850898869745 813.3850898869745 23.77513725768253 0 0 0 0 0.5 2 0 0 + YYK 2.5536 + + 8 NaN NaN 114722.7 NaN 11343 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14449 63.574 NaN 189120 35 0 15190 0.263 -1 VSRHCATAL 9 61 507.7622870859073 NaN 0 507.76226806640625 PEAK HCD FTMS 0 0 0 14440 43680.67578125 0.5728870312007854 16 -0.4405632019042969 9 Carbamidomethyl (C) _VSRHC(Carbamidomethyl (C))ATAL_ chr4:456368-472575|479|13.75|0.0|20.39|-|0|TE_info:AluSx,AluSx_dup24773,Alu,SINE,acceptor,-,456051,456368|None,ZNF721|6 8.745405648335112 0.25286782695573473 1 A 1 -1 11.99 0 0 1.183 0 0 131.09655474863422 808.3554497927104 939.4520045413446 0 0 0 0 0 0.5 0 0 0 A 1.183 + + 14 + NaN NaN 127664.6 NaN 11344 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14450 63.577 NaN 297100 35 0 32614 0.261 + 28722 TSSFWRHH 8 69 529.2498208234271 1056.485088713654 2 529.2501220703125 MULTI HCD FTMS 0 0 0 14440 67209.3515625 0.7619680656723382 -2 0.053806304931640625 10 Unmodified _TSSFWRHH_ ENST00000422744.2_1_10:96902449-96904134:-|nuORF 5.230669730166228 0.5342319408533849 1 RG{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 6 7 6.1317 0 0 0.58038 0 0 395.13402777791026 0 395.13402777791026 0 0.6471248870938258 0 0 0 0.4247425010840047 0 0 0 RG{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 0.58038 - 34 + NaN NaN 141281.3 NaN 11345 3103 14440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14452 63.582 NaN 1499400 35 0 743870 0.327 -1 0 68 427.30247491207956 852.5903968909591 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14451 923565.375 0.48112198717706617 -23 0.5983924865722656 1 NaN NaN 1 {I|L}[KS] 3 -1 7.4473 0 0 0.87349 0 0 506.36873061347814 0 506.36873061347814 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}[KS] 0.87349 - 28 NaN NaN 315485.3 NaN 11346 3104 14451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14453 63.587 NaN 388150 35 0 67724 0.261 + 8374 GYMEGYYTF 9 85 573.7256388277112 1145.4367247222224 2 573.7259521484375 MULTI HCD FTMS 0 0 0 14451 147355.5 0.33961527070832553 4 -0.11122512817382812 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 96.28474662873226 0.004361282420133734 1 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 88.995 0 0 7.7695 7.7695 93.311 0 0 0 14.771212547196626 16.478174818886373 14.771212547196626 14.771212547196626 0 2.5356668758921828 1 0.805462187404089 0 [YT]CEGYYT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EGYYT{M(Oxidation (M))|F};[YE]{[CT]|[{M(Oxidation (M))|F}G]}GYYT{M(Oxidation (M))|F};[YE]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YYT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ET]|[MV]}KGDDT{M(Oxidation (M))|F};[YT][YG][EC]YT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}EGKGDDT{M(Oxidation (M))|F};[YE]DGKGE{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F} 7.7695;6.4799;5.7728;4.7011;3.9476;3.75;3.5656;3.5227;2.8148;2.7087 -;+;-;-;-;-;-;-;-;- + 1261 NaN NaN 151369.9 NaN 11347 3104 14451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14454 63.59 NaN 330420 35 0 41395 0.262 + -1 IYMCIYYIFI 10 65 466.8992776736009 1397.6760036210028 3 467.2333679199219 MULTI HCD FTMS 0 0 0 14451 120639.328125 0.420223876527199 -1 0.03610992431640625 3 Carbamidomethyl (C) _IYMC(Carbamidomethyl (C))IYYIFI_ REV__ENST00000606662.1_1_5:115420473-115420716:-|nuORF 4.189502756095605 0.45312800054222196 1 {I|L}Y[{M(Oxidation (M))|F}T]{I|L}{I|L} 6 -1 52.664 0 0 3.768 0 0 0 644.2227684565368 644.2227684565368 45.67410004652736 0 0 0 0 0.4247425010840047 2 0 0 {I|L}Y[{M(Oxidation (M))|F}T]{I|L}{I|L} 3.768 - 64 + NaN NaN 127631.6 NaN 11348 3104 14451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14455 63.593 NaN 244220 35 0 22106 0.261 + 16305 LQTKWELL 8 63 515.8004476549919 1029.5863423767837 2 516.7900390625 MULTI HCD FTMS 0 0 0 14451 7495.58642578125 0.048430256896112564 24 -0.6723976135253906 4 Unmodified _LQTKWELL_ CON__ENSEMBL:ENSBTAP00000038253;CON__P04264;CON__P35908;CON__P35908v2;CON__Q6IFZ6;CON__Q6NXH9;CON__Q7Z794;CON__Q9R0H5;ENSG00000167768|ENST00000252244|KRT1;ENSG00000172867|ENST00000309680|KRT2;ENSG00000189182|ENST00000341809|KRT77 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.6501 0 0 864.5403351519775 0 864.5403351519775 0 6.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6501 - 125 + NaN NaN 119722.8 NaN 11349 3104 14451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14456 63.597 NaN 307840 35 0 49539 0.261 + 287 AFMKGVFTF 9 63 532.2678518541809 1062.5211507751617 2 532.2677612304688 MULTI HCD FTMS 0 0 0 14451 64892.48046875 0.1509321602415427 26 -0.7346916198730469 5 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 74.92900055777586 0.007493270374442853 1 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8 2 {[MS]|[{M(Oxidation (M))|F}A]} + + 53.324 1.7339 0.79499 5.0186 5.0186 61.647 0 0 0 0 42.355064229975795 0 0 0 1.7302046884880937 0 0.9749073637206092 0.3252574989159953 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.0186 - 144 + NaN NaN 129993.3 NaN 11350 3104 14451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14457 63.6 NaN 431370 35 0 34574 0.261 + 14190 LALYIECW 8 94 505.75463273176075 NaN 0 505.7544860839844 PEAK HCD FTMS 0 0 0 14451 9395.435546875 0.174733948671812 1 -0.02283477783203125 6 Unmodified _LALYIECW_ REV__ENSG00000150594|ENST00000280155|ADRA2A 26.34127834903884 0.38080804198364926 1 {M(Oxidation (M))|F}T 2 -1 11.995 0 0 1.1882 0 0 113.08517991489028 645.3244112604124 758.4095911753027 0 0 0 0 0 0 0 0.7302046884880937 0 {M(Oxidation (M))|F}T 1.1882 - 37 + NaN NaN 160480.8 NaN 11351 3104 14451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14459 63.605 NaN 1137700 35 0 144950 0.327 + 1279 AYMPHTFFI 9 92 571.7703588933117 1141.5261648534233 2 571.7705078125 MULTI HCD FTMS 0 0 0 14458 891272.9375 1 0 0 1 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 117.59872219059416 0.0017018906413822257 1 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 98 0 0 8.585 8.585 96.469 0 0 0 43.58471912431625 10.202264589233394 10.202264589233394 32.79976385353109 0 2.4916440611282624 2 0.75 0 + + AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}YY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RYY{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}Y{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R[NP]VY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RYY{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R[NP]V{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R[YV][NP]{I|L};{I|L}[HD]{M(Oxidation (M))|F}CT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R[YV][{I|L}P]N 8.585;5.7117;5.6044;4.9875;4.8495;4.6859;4.1253;3.4941;3.4147;2.3968 +;-;-;-;-;-;-;-;-;- + 1483 + NaN NaN 261534.1 NaN 11352 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14460 63.609 NaN 1648800 35 0 143120 0.261 + 6735 FPQEVKDLL 9 103 544.8028953888972 1087.5912378445944 2 544.80322265625 MULTI HCD FTMS 0 0 0 14458 858807.4375 1 0 0 2 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 96.93554129104106 0.004344229100022454 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L} 9 0 + 68.514 0 0 6.2996 6.2996 85.635 0 0 0 3.4057429772605445 14.839854989141458 3.4057429772605445 4.457188141978321 0 1.9419628234359578 2 1.122363747448347 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}QPE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V]QPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVK[{I|L}V]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}[AG]PE;{NN|[MP]|[D{I|L}]|[EV]}K{I|L}DQP{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V][AG]PE;{NN|[MP]|[D{I|L}]|[EV]}{I|L}KV{M(Oxidation (M))|F}QPE;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}V{M(Oxidation (M))|F}QPE 6.2996;5.8897;5.5995;5.5573;5.4529;5.0431;4.8007;4.7528;4.691;4.6737 +;-;-;-;-;-;-;-;-;- + 3639 NaN NaN 329182.3 NaN 11353 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14461 63.613 NaN 1135100 35 0 92682 0.261 + 6721 FPQDRVFML 9 105 584.7944593895264 1167.5743658458528 2 584.7948608398438 MULTI HCD FTMS 0 0 0 14458 585081 1 0 0 3 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 121.5340881639634 0.001118397630175091 1 {M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 2 + 98.194 0 0 8.4101 8.4101 92.127 0 0 0 68.99772391588013 5.360279740530814 5.360279740530814 9.208187539523749 0 2.8556270500406935 0 0.899649864804614 0.6307196863200843 {M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[AG]DRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PQV[RD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRVYM{I|L};{I|L}MQDRY{M(Oxidation (M))|F}[VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}P[AG]V[RD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DRVYM{I|L};{M(Oxidation (M))|F}PQV{M(Oxidation (M))|F}[RD]{I|L}{M(Oxidation (M))|F} 8.4101;7.6214;6.7574;6.6108;6.3243;6.1165;5.9687;5.8221;5.5356;5.4091 -;-;+;-;-;-;-;-;-;- + 4790 + NaN NaN 260448.2 NaN 11354 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14462 63.616 NaN 298230 35 0 53238 0.261 + 8504 HAFSVEPLL 9 54 506.77659810890725 1011.5386432846145 2 506.7766418457031 MULTI HCD FTMS 0 0 0 14458 113576.53125 1 0 0 4 Unmodified _HAFSVEPLL_ ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF 14.838274106304384 0.23215694253501695 1 EP{I|L}{I|L} 4 5 41.186 0 0 4.0716 0 0 541.263475486525 0 541.263475486525 0 37.2062251842808 0 0 0 0.9247425010840047 0 0 0 + EP{I|L}{I|L} 4.0716 + + 25 NaN NaN 128923.4 NaN 11355 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14463 63.62 NaN 185970 35 0 16862 0.261 + 11745 KDMQEYFDF 9 54 611.7577778575575 1221.5010027819148 2 611.7577514648438 MULTI HCD FTMS 0 0 0 14458 105116.671875 0.4808108880561701 8 -0.22873687744140625 5 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 57.836 0 0 4.7348 0 0 305.1390553205094 0 305.1390553205094 0 52.7738823421749 0 0 0 2.274227503252014 0 0 0.4247425010840047 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7348 - 126 NaN NaN 106831.9 NaN 11356 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14464 63.623 NaN 351490 35 0 38223 0.262 + 26780 SYGRRRLL 8 67 510.8076239097475 1019.6006948862951 2 510.8081970214844 MULTI HCD FTMS 0 0 0 14458 143722.03125 1 0 0 6 Unmodified _SYGRRRLL_ REV__nc|ENSG00000100490|Q00532-2|CDKL1 23.1484247019978 0.4234759064137959 1 CQ{M(Oxidation (M))|F}KQ{I|L}{I|L} 7 -1 49.794 0 0 4.8837 0 0 141.16827590156407 0 141.16827590156407 0 29.331205967070446 0 0 0 0 0 0 0.9802046884880937 CQ{M(Oxidation (M))|F}KQ{I|L}{I|L} 4.8837 - 312 NaN NaN 140483.7 NaN 11357 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14465 63.626 NaN 606070 35 0 175380 0.261 -1 LPAGDALLQM 10 79 522.7726854046417 1043.5308178760833 2 522.771484375 MULTI HCD FTMS 0 0 0 14458 85673.546875 0.6478532938083188 -8 0.24402236938476562 7 Oxidation (M) _LPAGDALLQM(Oxidation (M))_ ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 36.12702656103203 0.1790159924230938 1 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 6 -1 40.935 0 0 3.9227 0 0 263.1830814749939 0 263.1830814749939 0 19.965846974768482 0 0 0 1.4247425010840047 0 0 0.5796896906561032 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 3.9227 - 501 + NaN NaN 175168.5 NaN 11358 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14466 63.63 NaN 273880 35 0 23891 0.261 -1 0 67 587.3398212821282 586.3325448155282 1 587.292236328125 MULTI HCD FTMS 0 0 0 14458 48886.58203125 0.045602846465124185 -6 0.17841720581054688 8 NaN NaN 1 {[QV]|[N{I|L}]|[RA]|[KV]}D{I|L}{I|L} 5 -1 + 48.481 0 0 8.2686 8.2686 90.634 0 0 0 8.04953742795611 16.020599913279625 8.04953742795611 8.04953742795611 0 0.3494850021680094 1.3010299956639813 0.3494850021680094 0.3252574989159953 {[QV]|[N{I|L}]|[RA]|[KV]}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}N{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}GG{I|L}{I|L} 8.2686;6.8957;6.0887;5.2682;4.4612 -;-;-;-;- 48 NaN NaN 137899.7 NaN 11359 3105 14458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14468 63.634 NaN 995040 35 0 108280 0.327 + 13262 KYMDINFDF 9 78 604.7680082675702 1207.5214636019402 2 604.768310546875 MULTI HCD FTMS 0 0 0 14467 476090.1875 0.17497702942714147 8 -0.22192764282226562 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 84.5221896805406 0.004669506596793478 1 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 74.069 0 0 6.1339 6.1339 86.351 0 0 0 3.2568864632742844 43.455612550363796 3.2568864632742844 6.817496819840656 0 2.2302046884880937 0 0.2614393726401688 1.1861818737241734 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{I|L}{[{M(Oxidation (M))|F}D]|MM}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{I|L}{[{M(Oxidation (M))|F}D]|MM}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};[YK]{I|L}{[{M(Oxidation (M))|F}D]|MM}C{[SA]|[TG]}D{M(Oxidation (M))|F};[YK]{[C(Carbamidomethyl (C))E]|[WC]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}Y{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F} 6.1339;5.5693;5.3714;4.8183;4.8068;4.0558;4.041;3.4289;2.756;2.6777 +;-;-;-;-;-;-;-;-;- + 1476 NaN NaN 254872 NaN 11360 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14469 63.639 NaN 1098300 35 0 169800 0.261 + 6562 FPLDLDVKM 9 101 547.2833211479854 1092.5520893627706 2 547.7699584960938 MULTI HCD FTMS 0 0 0 14467 31956.025390625 0.05554988374967067 27 -0.7608833312988281 2 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 45.739877483867886 0.03899552410870734 1 {M(Oxidation (M))|F}P{I|L}DTGVVV{M(Oxidation (M))|F} 10 4 + 46.455 0 0 4.252 4.252 80.263 0 0 0 28.139494725432293 8.48599459218456 8.48599459218456 0.26802492411967904 0 0.5114393726401688 0 0.5 0 {M(Oxidation (M))|F}P{I|L}DTGVVV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}DTGV{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DQV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D[VG]TVV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]TGVVV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[TA]A[{I|L}P]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT] 4.252;4.2274;3.5236;3.3962;3.3261;3.2681;3.248;3.123;2.6912;2.5977 -;-;-;-;-;-;-;-;-;- 2000 + NaN NaN 246332.8 NaN 11361 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14470 63.642 NaN 221970 35 0 49258 0.261 + 14174 LAIETEAEL 9 53 494.7634591850468 987.5123654368937 2 494.7637023925781 MULTI HCD FTMS 0 0 0 14467 128419.5 0.4389583457731199 1 -0.032726287841796875 3 Unmodified _LAIETEAEL_ ENSG00000013364|ENST00000357402|MVP 65.23502041540118 0.010630085227462206 1 ETEAE{I|L} 6 3 63.109 0 0 6.3907 0 0 297.20408827949376 0 297.20408827949376 0 48.50501891384965 0 0 0 2.1861818737241734 0 0.4247425010840047 0 + ETEAE{I|L} 6.3907 + + 87 NaN NaN 115493.7 NaN 11362 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14471 63.646 NaN 493570 35 0 100420 0.261 + -1 FAPICCALI 9 80 532.7662709159748 1063.5179888987495 2 532.7669677734375 MULTI HCD FTMS 0 0 0 14467 145459.296875 0.7319397270182721 -4 0.1160888671875 4 2 Carbamidomethyl (C) _FAPIC(Carbamidomethyl (C))C(Carbamidomethyl (C))ALI_ REV__ENSG00000074964|ENST00000361221|ARHGEF10L;REV__ENST00000469726.5_1_1:17942561-18023872:+|nuORF;REV__nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;REV__nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L 28.173230860318316 0.11963627304438548 1 EA{I|L}{I|L} 4 -1 42.097 0 0 3.9583 0 0 619.2604847638687 0 619.2604847638687 0 4.261364886420367 0 0 0 1.2302046884880937 0 0.3252574989159953 0 EA{I|L}{I|L} 3.9583 - 165 NaN NaN 158994.1 NaN 11363 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14472 63.649 NaN 232200 35 0 31778 0.261 + 1842 CTRCCMGH 8 49 455.66017429197643 909.3057956507529 2 455.6603698730469 MULTI HCD FTMS 0 0 0 14467 41585.74609375 0.3907242172395541 -3 0.08843231201171875 5 Unmodified _CTRCCMGH_ ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;nc|ENSG00000114374|O00507-2|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 7 16.99 0 0 1.8684 0 0 744.2269972882514 0 744.2269972882514 0 13.293037728310253 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8684 + + 14 + NaN NaN 118175.5 NaN 11364 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14473 63.652 NaN 91758 35 0 9649.2 0.261 + -1 EHCECHCDLF 10 39 450.4951087704536 1348.463496911561 3 450.4949951171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _EHC(Carbamidomethyl (C))EC(Carbamidomethyl (C))HCDLF_ REV__ENSG00000119514|ENST00000375011|GALNT12 0.6976657623105312 0.47161084886498755 1 [YT]GT 4 -1 26.682 0 0 1.9787 0 0 0 923.2612013395484 923.2612013395484 8.723637474483468 0 0 0 0 0 2 0 0 [YT]GT 1.9787 - 15 NaN NaN 104511.7 NaN 11365 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14474 63.656 NaN 462380 35 0 69860 0.261 -1 SPGSPVILQM 10 75 522.7726854046417 1043.5308178760833 2 522.7731323242188 MULTI HCD FTMS 0 0 0 14467 73712.328125 0.5574039632062429 -7 0.20790481567382812 7 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 22.736283301280096 0.29844449404982915 1 {M(Oxidation (M))|F}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 7 -1 40.195 0 0 3.8519 0 0 116.11559246792395 0 116.11559246792395 0 34.71085733450202 0 0 0 1.4247425010840047 0 0 0.3252574989159953 {M(Oxidation (M))|F}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 3.8519 - 137 + NaN NaN 153227.2 NaN 11366 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14475 63.659 NaN 192200 35 0 24227 0.261 + -1 MDCFSRLLL 9 58 577.7870402091164 1153.5595274850327 2 577.787109375 MULTI HCD FTMS 0 0 0 14467 32340.455078125 0.3461519823902741 21 -0.5846748352050781 8 Carbamidomethyl (C) _MDC(Carbamidomethyl (C))FSRLLL_ REV__ENST00000540006.5_1_13:111293886-111296904:-|nuORF 6.2057823575117 0.30397260197431997 1 {I|L}{I|L} 2 -1 20.445 0 0 1.7724 0 0 909.3796934406142 0 909.3796934406142 0 18.66257597615492 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 1.7724 + + 7 NaN NaN 104180.9 NaN 11367 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14476 63.662 NaN 78653 35 0 4051.5 0.261 -1 MAEPPRMMDF 10 46 620.7629519354753 1239.5113509377504 2 621.2645263671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 10.799506525563784 0.4100970765206026 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.7868 0 0 698.2948633248052 0 698.2948633248052 0 45.96910013008056 0 0 0 1.5 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7868 - 79 NaN NaN 92572.9 NaN 11368 3106 14467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14478 63.667 NaN 3590100 35 0 679900 0.327 + 29077 TYGEIFEKF 9 105 567.2791460627044 1132.5437391922087 2 567.2794799804688 MULTI HCD FTMS 0 0 0 14477 2680467.5 0.10871398696519512 23 -0.6496429443359375 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 136.39213081522345 0.00021731600835925866 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 110.82 0 0 9.7847 9.7847 97.731 0 0 0 43.48964054505268 16.478174818886373 16.478174818886373 32.841830880828425 0 2.5994850021680094 2 0.8882104921644451 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT][TP]T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SP{I|L}[YT]K{M(Oxidation (M))|F};[YT][TP]TE{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9.7847;6.8848;5.3981;5.1499;5.1363;5.1126;4.9808;4.888;4.8851;4.8012 +;-;-;-;-;-;-;-;-;- + 4919 + NaN NaN 411915.9 NaN 11369 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14479 63.672 NaN 630670 35 0 61697 0.261 + 6897 FPVEHVQLL 9 95 541.3054706011272 1080.5963882690544 2 541.3058471679688 MULTI HCD FTMS 0 0 0 14477 262229.875 0.5688312542261433 2 -0.0556182861328125 2 Unmodified _FPVEHVQLL_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 75.76082778847304 0.0072241045649327805 1 VQ{I|L}{I|L} 4 5 47.607 0 0 4.4056 0 0 609.2921339152199 0 609.2921339152199 0 17.808939959133525 0 0 0 1.1861818737241734 0 0 0.3807196863200844 + VQ{I|L}{I|L} 4.4056 + + 597 NaN NaN 180105.6 NaN 11370 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14480 63.675 NaN 447330 35 0 40377 0.261 + 32391 VYWKIYNSI 9 75 593.3187552170008 1184.6229575008015 2 593.3190307617188 MULTI HCD FTMS 0 0 0 14477 131354.21875 0.37930711176187876 2 -0.0556182861328125 3 Unmodified _VYWKIYNSI_ ENSG00000115524|ENST00000335508|SF3B1 93.16586880292088 0.00444300900000894 1 [YV]WK{I|L}YNS{I|L} 9 0 + 85.024 0 0 7.1773 7.1773 90.108 0 0 0 8.213541617065431 8.213541617065431 8.213541617065431 9.208187539523749 0 2.3243923658886185 2 0.3252574989159953 0.4247425010840047 + + [YV]WK{I|L}YNS{I|L};[YV]WK{I|L}YGGS{I|L};[YV]WK{I|L}[QT][{M(Oxidation (M))|F}T];[YV]WK{I|L}{[QS]|[NT]}[YV];[YV]{[QS]|[NT]}V{I|L}Y[WK];{[{M(Oxidation (M))|F}C]|[YS]}{[QV]|[N{I|L}]|[RA]|[KV]}V{I|L}Y[WK] 7.1773;6.4;3.9332;3.1589;3.1014;0.40094 +;-;-;-;-;- + 508 NaN NaN 151407.5 NaN 11371 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14481 63.679 NaN 557480 35 0 117370 0.261 + -1 SPAWCLKML 9 82 532.7662709159748 1063.5179888987495 2 532.765380859375 MULTI HCD FTMS 0 0 0 14477 154679.84375 0.778336792779193 -3 0.08504867553710938 4 Oxidation (M) _SPAWCLKM(Oxidation (M))L_ REV__ENSG00000105639|ENST00000458235|JAK3 29.081581746732265 0.1154664336125038 1 EA{I|L}{I|L} 4 -1 41.344 0 0 3.8875 0 0 619.2617054669937 0 619.2617054669937 0 -0.254085048539352 -0.254085048539352 0 0 1.1549471895720984 0 0.3252574989159953 0 EA{I|L}{I|L} 3.8875 - 211 NaN NaN 168720.5 NaN 11372 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14482 63.682 NaN 404800 35 0 54947 0.261 + 29460 TYVENLRLL 9 68 560.8217495275421 1119.6289461218842 2 560.8217163085938 MULTI HCD FTMS 0 0 0 14477 102998.0234375 0.06304429830655481 16 -0.42407989501953125 5 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 67.83816525789305 0.009787749748478139 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 85.429 0 0 7.6301 7.6301 93.419 0 0 0 7.2897845729981725 7.2897845729981725 7.2897845729981725 16.49797211252192 0 2.6549471895720984 2 0.6549471895720985 0.4247425010840047 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YT]V{[NV]|[RG]}D[{I|L}A]{I|L}{I|L} 7.6301;6.1566;3.2892 +;-;- + 219 NaN NaN 145766.3 NaN 11373 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14483 63.685 NaN 143960 35 0 23111 0.262 + 34025 YMPMAMVV 8 50 471.2177538821417 940.4209548310835 2 471.2180480957031 MULTI HCD FTMS 0 0 0 14477 56712.1328125 0.31664477375272115 2 -0.0556182861328125 6 Unmodified _YMPMAMVV_ REV__ENSG00000189337|ENST00000376030|KAZN 6.354104778181461 0.5325651638111438 1 VV 2 -1 24.776 0 0 2.6346 0 0 724.2754994123062 0 724.2754994123062 0 19.291746928241125 0 0 0 0.3807196863200844 0 0 0 VV 2.6346 + + 32 NaN NaN 121040.3 NaN 11374 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14484 63.689 NaN 101210 35 0 5798.1 0.261 + 25939 SPDAKIFCL 9 44 497.2576008362225 992.500648739245 2 497.2574462890625 MULTI HCD FTMS 0 0 0 14477 27644.771484375 0.1005087042593506 14 -0.37506103515625 7 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 20.41453444215458 0.18397929046831515 1 C{I|L} 2 7 25.969 0 0 2.6165 0 0 758.3965243104765 0 758.3965243104765 0 2.7815125038364386 0 0 0 0.5 0 0 0 + C{I|L} 2.6165 + + 17 NaN NaN 103908.7 NaN 11375 3107 14477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14486 63.693 NaN 7449400 35 0 2108300 0.327 + 24686 RYLTVAAVF 9 90 520.3002137463006 1038.5858745594012 2 520.30078125 MULTI HCD FTMS 0 0 0 14485 4580236 0.19532502968958054 -5 0.14733505249023438 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 60.07390631473393 0.0174780869009295 1 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 81.707 0 0 7.8671 7.8671 93.878 0 0 0 10.287241512618948 52.197926122642954 10.287241512618948 17.0289375146765 0 2.305462187404089 0.8860566476931632 1.1989700043360187 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVAVA{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}[HV]PAV{M(Oxidation (M))|F};[Y{I|L}]RTVQ{I|L}{M(Oxidation (M))|F};[HV]VPTVAAV{M(Oxidation (M))|F};[HV]VAVTPAV{M(Oxidation (M))|F};[Y{I|L}]RTAAVV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{M(Oxidation (M))|F}{I|L};[Y{I|L}]R{[QD]|[EN]|[WG]|[KD]|[RS]}VV{M(Oxidation (M))|F} 7.8671;6.2275;6.2275;5.3547;5.2372;5.2081;5.0809;4.8306;4.7574;4.6662 -;-;-;-;-;-;-;-;-;- 632 NaN NaN 1020356.5 NaN 11376 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14487 63.698 NaN 718300 35 0 72791 0.261 -1 0 93 526.2815928167875 1050.5486327003748 2 526.2821044921875 MULTI HCD FTMS 0 0 0 14485 307457.46875 0.08219023261850464 17 -0.46022796630859375 2 NaN NaN 1 VYVVWS{I|L} 7 -1 54.245 0 0 5.1635 0 0 186.07910353828282 0 186.07910353828282 0 18.675252279609836 0 0 0 1.3807196863200843 0 0.4247425010840047 0 VYVVWS{I|L} 5.1635 - 2033 NaN NaN 187395.7 NaN 11377 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14488 63.701 NaN 424460 35 0 39070 0.261 + 27076 SYMGHFDLL 9 80 549.7497688734081 1097.4849848136162 2 549.75 MULTI HCD FTMS 0 0 0 14485 187204.53125 0.018073012745606493 122 -3.3111648559570312 3 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 64.23631603340823 0.01165516075559909 1 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 33.774 0 0 3.0774 0 0 591.2095814435562 0 591.2095814435562 0 11.122731327798547 0 0 0 0.3807196863200844 0 0.7059771852360797 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.0774 + + 183 NaN NaN 150517.2 NaN 11378 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14489 63.705 NaN 436010 35 0 51554 0.261 + 5158 FFDAELSQM 9 62 552.2393276201218 1102.4641023070435 2 552.2392578125 MULTI HCD FTMS 0 0 0 14485 112096.4140625 0.01765580213063995 51 -1.4106979370117188 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 86.33184430468982 0.004622086694044132 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 73.338 0 0 6.6522 6.6522 89.142 0 0 0 3.410065365128716 56.348200093054714 3.410065365128716 9.208187539523749 0 2.274227503252014 0 0.7742275032520141 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F} 6.6522;5.8169;1.4145;1.3012 +;-;-;- + 246 NaN NaN 150429.7 NaN 11379 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14490 63.708 NaN 241740 35 0 23023 0.261 + 32318 VYVDLGGSHVF 11 65 596.803681012921 1191.5928090926418 2 596.8040771484375 MULTI HCD FTMS 0 0 0 14485 109625.2734375 0.08107243378654282 15 -0.3979034423828125 5 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 70.33199760932243 0.015004000202230274 1 [YV]VD{I|L}GGSHV{M(Oxidation (M))|F} 11 0 + 79.53 0 0 6.6743 6.6743 87.765 0 0 0 10.07007180900061 10.07007180900061 10.07007180900061 7.812898245978175 0 2.885151878060192 2 0 0 + + [YV]VD{I|L}GGSHV{M(Oxidation (M))|F};[YV]VD{I|L}NSHV{M(Oxidation (M))|F};[YV]VEVGGSHV{M(Oxidation (M))|F};[YV]DV{I|L}GGSHV{M(Oxidation (M))|F};[YV]D{I|L}VGGSHV{M(Oxidation (M))|F};[YV]D[PA]REPV{M(Oxidation (M))|F};[YV]D[PA]REVP{M(Oxidation (M))|F};[YV]V{[TV]|[{I|L}S]}[DN]HV{M(Oxidation (M))|F};[YV]VD{I|L}G{[WN]|[YH]}{[QV]|[N{I|L}]|[RA]|[KV]};[YV]VEVG{[WN]|[YH]}{[QV]|[N{I|L}]|[RA]|[KV]} 6.6743;6.0186;5.3047;5.0521;4.5276;4.5239;4.0374;3.8826;3.3387;2.8143 +;-;-;-;-;-;-;-;-;- + 822 + NaN NaN 124300.6 NaN 11380 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14491 63.711 NaN 298360 35 0 31405 0.261 -1 APFKFDMEL 9 77 557.268033382246 1112.521513831292 2 557.7837524414062 MULTI HCD FTMS 0 0 0 14485 30647.244140625 0.050862015068915724 63 -1.74090576171875 6 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 10.150570793230772 0.27265765907388223 1 GV{I|L}{M(Oxidation (M))|F}DPVG{M(Oxidation (M))|F} 9 -1 45.416 0 0 4.0823 0 0 163.01725465336068 0 163.01725465336068 0 29.53070327321406 0 0 0 0 0 0 0 GV{I|L}{M(Oxidation (M))|F}DPVG{M(Oxidation (M))|F} 4.0823 - 841 + NaN NaN 128951 NaN 11381 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14492 63.715 NaN 279890 35 0 33830 0.261 + 49 AATTVEEIL 9 52 473.7582276739842 945.5019024147684 2 473.7582092285156 MULTI HCD FTMS 0 0 0 14485 173847.734375 0.49129800731693146 -2 0.058902740478515625 7 Unmodified _AATTVEEIL_ ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 71.13359017698441 0.008721403657255008 1 VEE{I|L}{I|L} 5 4 60.745 0 0 6.4247 0 0 344.17198378730626 0 344.17198378730626 0 53.75569708000178 0 0 0 1.8807196863200843 0 0.8494850021680094 0 + VEE{I|L}{I|L} 6.4247 + + 87 NaN NaN 123690 NaN 11382 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14493 63.718 NaN 169300 35 0 17820 0.261 + 35724 YYLNDLERI 9 66 599.808710876716 1197.6028688202318 2 599.8091430664062 MULTI HCD FTMS 0 0 0 14485 86530.296875 0.050310410841266195 26 -0.732666015625 8 Unmodified _YYLNDLERI_ ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2 24.990960013464015 0.14443998892849796 1 YY{I|L}[DN]{I|L}ER{I|L} 9 0 + 48.094 0 0 4.0159 4.0159 89.517 0 0 0 34.361089862691294 8.256886463274284 8.256886463274284 48.09439983606076 0 1.274227503252014 2 0 0 + + YY{I|L}[DN]{I|L}ER{I|L} 4.0159 + + 93 + NaN NaN 119631.4 NaN 11383 3108 14485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14495 63.723 NaN 1263500 35 0 622670 0.327 -1 0 69 427.30247491207956 852.5903968909591 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14494 705438.1875 0.36749084773840485 -18 0.5153007507324219 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.3598 0 0 687.5114917169342 0 687.5114917169342 0 4.146518864155125 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3598 - 33 + NaN NaN 271450.9 NaN 11384 3109 14494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14496 63.727 NaN 1208300 35 0 165230 0.261 + 14036 KYVDLTVSF 9 85 536.2892160408406 1070.5638791484812 2 536.289306640625 MULTI HCD FTMS 0 0 0 14494 668968.75 1 0 0 2 Unmodified _KYVDLTVSF_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 133.0521902211835 0.0004198702180815479 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTA{I|L}TVS{M(Oxidation (M))|F} 10 3 + 92.507 0 0 8.6409 8.6409 88.459 0 0 0 1.8312325961992002 11.505149978319906 1.8312325961992002 1.8312325961992002 0 2.2302046884880937 1.5228787452803376 1.4163865622122673 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTA{I|L}TVS{M(Oxidation (M))|F};[YK]VD{I|L}TVS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}S{M(Oxidation (M))|F}A{I|L}TVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTA{I|L}TSV{M(Oxidation (M))|F};[YK]VD{I|L}TSV{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}TA{I|L}TVS{M(Oxidation (M))|F};[VS]T{M(Oxidation (M))|F}A{I|L}TVS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}S{M(Oxidation (M))|F}A{I|L}TSV{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}TA{I|L}TSV{M(Oxidation (M))|F};[VS]T{M(Oxidation (M))|F}A{I|L}TSV{M(Oxidation (M))|F} 8.6409;8.4699;7.8088;7.5371;7.366;7.2184;6.8747;6.705;6.1146;5.7709 -;+;-;-;-;-;-;-;-;- + 1822 NaN NaN 288831.9 NaN 11385 3109 14494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14497 63.731 NaN 1847300 35 0 390820 0.262 + 821 AVLGRYVP 8 95 437.7606221097689 873.5066912863379 2 437.76080322265625 MULTI HCD FTMS 0 0 0 14494 159197 0.307072135222303 -5 0.14066696166992188 3 Unmodified _AVLGRYVP_ ENSG00000141699|ENST00000309428|RETREG3 46.92087301778293 0.1468278106890452 1 {I|L}YTVAR 6 7 71.023 0 0 8.1308 0 0 0 167.0823153131469 167.0823153131469 10.52503872613935 0 0 0 0 1.2887254899964358 1.6989700043360187 0.6989700043360187 0 {I|L}YTVAR 8.1308 - 2001 + NaN NaN 364446.1 NaN 11386 3109 14494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14498 63.734 NaN 152370 35 0 16030 0.261 + 34142 YPAHFGQLECL 11 55 639.3025581268515 1276.590563320503 2 639.3019409179688 MULTI HCD FTMS 0 0 0 14494 77241.96875 0.5772033737215321 4 -0.11090469360351562 4 Unmodified _YPAHFGQLECL_ ENSG00000166747|ENST00000299980|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF;nc|ENSG00000166747|O43747-2|AP1G1 18.373094154950223 0.29699704000378496 1 [YN]{[WT]|[RM]}[HV]{I|L}EC{I|L} 10 6 + 41.444 0 0 3.2464 3.2464 88.141 0 0 0 4.505369237630177 37.46416941107093 4.505369237630177 32.730012720637376 0 0.5 1.5228787452803376 0 0 [YN]{[WT]|[RM]}[HV]{I|L}EC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}[HV][WE][KC] 3.2464;0.68256 -;- 48 NaN NaN 107618.6 NaN 11387 3109 14494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14499 63.737 NaN 216520 35 0 11947 0.261 + 11553 IYSQTYFRF 9 67 612.8062523194469 1223.5979517056937 2 612.8055419921875 MULTI HCD FTMS 0 0 0 14494 30831.49609375 0.01595001781874044 52 -1.4303131103515625 5 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 20.453626601364224 0.18364154288633264 1 [Y{I|L}]R 3 6 27.24 0 0 2.2262 0 0 0 788.3269610653218 788.3269610653218 10.786661328054965 0 0 0 0 0.5 2 0 0 [Y{I|L}]R 2.2262 - 99 NaN NaN 106451.8 NaN 11388 3109 14494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14500 63.741 NaN 83194 35 0 7944.4 0.261 -1 0 41 590.5489501953125 NaN 0 590.5489501953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 Y 1 -1 5.4846 0 0 0.46558 0 0 665.817284080275 346.10801111392817 1011.9252951942033 0 0 0 0 0 0 0 0 0 Y 0.46558 - 6 + NaN NaN 114144.5 NaN 11389 3109 14494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14502 63.746 NaN 1078600 35 0 95766 0.327 + 1280 AYMPHTFFI 9 108 571.7703588933117 1141.5261648534233 2 571.7704467773438 MULTI HCD FTMS 0 0 0 14501 567328.0625 0.6365368436871225 5 -0.14009857177734375 1 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 104.79918948944588 0.003791450360204016 1 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 2 + 93.017 0 0 8.1485 8.1485 96.783 0 0 0 60.982339513155544 12.587418566968154 12.587418566968154 60.30848766326997 0 1.9436726795685342 2 0.6747425010840047 0 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{I|L}[HD]{M(Oxidation (M))|F}CT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Q{I|L}]{[RE]|[WV]}C{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L};[QP]AW{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L};A[KP]PG{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};A[QP]PG{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};A[QP]P[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}{[YC]|[HE]}[{M(Oxidation (M))|F}V]Y;[Q{I|L}]{[RE]|[WV]}C{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[QP]AW{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F} 8.1485;2.8653;1.9873;1.8779;1.7514;1.7514;1.7066;1.6654;1.466;1.3565 -;-;-;-;-;-;-;-;-;- 1853 + NaN NaN 248545 NaN 11390 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14503 63.75 NaN 778610 35 0 67247 0.261 + 6722 FPQDRVFML 9 91 584.7944593895264 1167.5743658458528 2 584.7948608398438 MULTI HCD FTMS 0 0 0 14501 466133.59375 0.7966992497619988 5 -0.14009857177734375 2 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 80.6760300276096 0.005633624786464751 1 {M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 2 + 95.36 0 0 8.1673 8.1673 91.699 0 0 0 68.67722213736918 4.85863111416478 4.85863111416478 9.208187539523749 0 2.6549471895720984 0 0.3252574989159953 0.5994850021680094 {M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[AG]DRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDRVYM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DRVYM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]DR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[QP]{M(Oxidation (M))|F}DRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}E[NP]RV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8.1673;7.3787;6.8584;6.4068;6.0697;5.9145;5.6181;5.1259;4.975;4.9069 -;-;+;-;-;-;-;-;-;- + 1629 + NaN NaN 200265.2 NaN 11391 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14504 63.754 NaN 575330 35 0 46927 0.261 + 6736 FPQEVKDLL 9 86 544.8028953888972 1087.5912378445944 2 544.8030395507812 MULTI HCD FTMS 0 0 0 14501 211085.484375 0.245789073496467 5 -0.14009857177734375 3 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 78.06048673739656 0.006479972202176041 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L} 9 0 + 56.665 0 0 5.2102 5.2102 81.994 0 0 0 0.5775337560018627 0.5775337560018627 0.5775337560018627 0.5775337560018627 0 1.6989700043360187 2 0.3054621874040891 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}QPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVK[{I|L}V]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}[AG]PE;{NN|[MP]|[D{I|L}]|[EV]}[QP]{M(Oxidation (M))|F}KD{I|L}{I|L};{[TV]|[{I|L}S]}[VG]{I|L}V{M(Oxidation (M))|F}QPE;[QP]{I|L}D{M(Oxidation (M))|F}KD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[QP]{M(Oxidation (M))|F}K[{I|L}V]E;[QP]{M(Oxidation (M))|F}EVKD{I|L}{I|L} 5.2102;5.1571;4.4743;4.3635;4.3104;3.4538;3.1869;2.931;2.718;2.6553 +;-;-;-;-;-;-;-;-;- + 444 NaN NaN 187053.2 NaN 11392 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14505 63.757 NaN 302480 35 0 32448 0.261 + -1 IYMCIYYIFI 10 58 466.8992776736009 1397.6760036210028 3 467.2336730957031 MULTI HCD FTMS 0 0 0 14501 100908.3515625 0.351494817872546 5 -0.14009857177734375 4 Carbamidomethyl (C) _IYMC(Carbamidomethyl (C))IYYIFI_ REV__ENST00000606662.1_1_5:115420473-115420716:-|nuORF 4.189502756095605 0.45312800054222196 1 {I|L}Y[{M(Oxidation (M))|F}T]{I|L}{I|L} 6 -1 49.654 0 0 3.5526 0 0 0 644.2243746393186 644.2243746393186 40.189549981487076 0 0 0 0 0.4247425010840047 2 0 0 {I|L}Y[{M(Oxidation (M))|F}T]{I|L}{I|L} 3.5526 - 37 + NaN NaN 137353.7 NaN 11393 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14506 63.76 NaN 298630 35 0 34835 0.261 + 29461 TYVENLRLL 9 66 560.8217495275421 1119.6289461218842 2 560.8216552734375 MULTI HCD FTMS 0 0 0 14501 114490.0390625 0.07007847272103496 19 -0.5317611694335938 5 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 76.82478488871298 0.006879825292024087 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 82.391 0 0 7.3588 7.3588 92.962 0 0 0 7.134928107446186 7.134928107446186 7.134928107446186 16.343115646969935 0 2.6237125054200234 2 0.6549471895720984 0.805462187404089 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L} 7.3588;5.8991;3.3442 +;-;- + 288 NaN NaN 138348.3 NaN 11394 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14507 63.764 NaN 397700 35 0 32778 0.261 + 18030 MLLTSDQTL 9 81 511.26402506068985 NaN 0 511.2638244628906 PEAK HCD FTMS 0 0 0 14501 71561.5390625 0.6041659383818979 5 -0.14009857177734375 6 Unmodified _MLLTSDQTL_ ENSG00000106410|ENST00000467773|NOBOX;nc|ENSG00000106410|O60393-2|NOBOX 30.636539890814138 0.11600348607007434 1 V 1 9 9.732 0 0 0.95364 0 0 643.315268283686 275.1068514459594 918.4221197296454 0 0 0 0 0 0.2742275032520141 0 0 0 V 0.95364 - 173 + NaN NaN 151625.2 NaN 11395 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14508 63.767 NaN 281160 35 0 30247 0.261 + 29462 TYVENLRLL 9 58 560.8217495275421 1119.6289461218842 2 561.3233032226562 MULTI HCD FTMS 0 0 0 14501 112149.8828125 0.10764248171608594 19 -0.5317611694335938 7 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 76.82478488871298 0.006879825292024087 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 85.358 0 0 7.6238 7.6238 93.927 0 0 0 10.982587709797329 10.982587709797329 10.982587709797329 20.190775249321078 0 2.579689690656103 2 0.6747425010840047 0.7742275032520141 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L} 7.6238;5.8205 +;- + 233 NaN NaN 127303.4 NaN 11396 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14509 63.77 NaN 323590 35 0 32824 0.261 + 25407 SEPDFVAKFY 10 91 601.7903146426586 NaN 0 601.797119140625 PEAK HCD FTMS 0 0 0 14501 81320.453125 0.37570786646956206 -4 0.11115646362304688 8 Unmodified _SEPDFVAKFY_ ENSG00000179933|ENST00000319074|C14orf119 23.789781309258295 0.24993608346601393 1 {I|L}ER 3 9 12.307 0 0 1.0243 0 0 535.2515144398109 265.06479822330317 800.3163126631141 0 0 0 0 0 0 0 0 0 {I|L}ER 1.0243 - 231 + NaN NaN 129370.2 NaN 11397 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14510 63.773 NaN 152120 35 0 8982.1 0.262 + 15779 LPGRDLLLV 9 51 498.315757794647 994.6169626560941 2 498.3158264160156 MULTI HCD FTMS 0 0 0 14501 80190.3671875 0.9325987109627947 -4 0.11115646362304688 9 Unmodified _LPGRDLLLV_ ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3;PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant;PLXNB3|p.P1357Afs*73|1|0.68|ENSG00000198753|chrX:153775012-153775013|-/G|frameshift_variant 16.149105407346934 0.22083165093524068 1 DV{I|L} 3 7 31.242 0 0 3.1411 0 0 649.4277328607224 0 649.4277328607224 0 15.300084529637983 0 0 0 0.805462187404089 0 0 0 DV{I|L} 3.1411 - 45 NaN NaN 110294.8 NaN 11398 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14511 63.777 NaN 81492 35 0 5719.8 0.261 + 18280 MPDVDLHL 8 47 470.23380515187733 938.4530573705547 2 470.234130859375 MULTI HCD FTMS 0 0 0 14501 13859.314453125 0.010569164065790962 32 -0.90643310546875 10 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 8.593279151180031 0.5292430274356741 1 MP 2 6 20.969 0 0 2.2344 0 0 0 707.3378407822345 707.3378407822345 20.969100130080562 0 0 0 0 0 0 0 0 + MP 2.2344 + + 4 + NaN NaN 103721.8 NaN 11399 3110 14501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14513 63.782 NaN 676940 35 0 67444 0.327 + 13263 KYMDINFDF 9 70 604.7680082675702 1207.5214636019402 2 604.7683715820312 MULTI HCD FTMS 0 0 0 14512 450758.03125 0.1656667231742759 13 -0.3424415588378906 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 63.227496030279354 0.01306643085373406 1 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 69.814 0 0 5.7816 5.7816 85.545 0 0 0 2.922152515121226 45.17548507536412 2.922152515121226 6.159393232904208 0 1.9247425010840047 0 0.23965182871044374 1.1549471895720984 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}P]{[HG]|PP}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F} 5.7816;5.2715;5.2461;5.019;4.7361;4.7281;4.509;3.6886;3.5307;3.2191 +;-;-;-;-;-;-;-;-;- + 948 NaN NaN 188238.1 NaN 11400 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14514 63.786 NaN 1271300 35 0 209440 0.261 + 3815 EPEQFVVVM 9 105 547.2664685839877 NaN 0 547.2664794921875 PEAK HCD FTMS 0 0 0 14512 203157.265625 0.6633817647560633 1 -0.02606201171875 2 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 61.357469665136826 0.022835916367010354 1 VQTHV{I|L} 6 7 39.819 0 0 3.6447 0 0 165.04888322183666 247.07233606510002 412.1212192869367 0 0 0 0 0 1.9247425010840047 0 0.7742275032520141 0 VQTHV{I|L} 3.6447 - 650 + NaN NaN 276792.1 NaN 11401 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14515 63.79 NaN 675560 35 0 76733 0.261 + 11477 IYQKAFDLI 9 79 555.8135375976562 NaN 0 555.794921875 PEAK HCD FTMS 0 0 0 14512 15300.193359375 0.6028118397594693 2 -0.05207061767578125 3 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 24.020572477871973 0.16041128140741606 1 S{I|L}EKWY 6 8 22.089 0 0 1.9907 0 0 131.12882742170615 169.06206690006096 300.19089432176713 0 0 0 0 0 0 0 0.3494850021680094 0 S{I|L}EKWY 1.9907 - 165 + NaN NaN 188670.5 NaN 11402 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14516 63.793 NaN 469250 35 0 57919 0.261 + 11454 IYQFIMDRF 9 66 624.8076309459402 1247.6007089586803 2 624.8069458007812 MULTI HCD FTMS 0 0 0 14512 213088.3125 0.9072024251221259 -3 0.08827590942382812 4 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 73.1962812333195 0.00805395026373928 1 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 105.5 0 0 8.4562 8.4562 92.19 0 0 0 79.48638135581298 9.889917747712644 9.889917747712644 9.208187539523749 0 2.885151878060192 2 0.4247425010840047 0.3807196863200844 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]{[WT]|[RM]}T{M(Oxidation (M))|F}D[VG]{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};QY{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F} 8.4562;7.7181;7.0207;6.2826;5.4478;4.7756;4.6019;4.5859;4.4178;4.2843 +;-;+;-;-;-;-;-;-;- + 478 + NaN NaN 165176.3 NaN 11403 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14517 63.796 NaN 421120 35 0 119150 0.263 -1 TAMDVVYAL 9 47 499.74680302113535 997.4790531090707 2 499.7464599609375 MULTI HCD FTMS 0 0 0 14512 139020.78125 0.20438003454094322 -4 0.11445236206054688 5 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 28.486842064014134 0.11819662193267319 1 VYA{I|L} 4 -1 45.745 0 0 4.5861 0 0 533.2144225987494 0 533.2144225987494 0 45.74539712336197 0 0 0 1.3807196863200843 0 0 0 VYA{I|L} 4.5861 + + 35 NaN NaN 160570.2 NaN 11404 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14518 63.8 NaN 285910 35 0 27035 0.261 + 28922 TWSLTETYF 9 80 574.2688723278808 1146.5231917225615 2 574.2685546875 MULTI HCD FTMS 0 0 0 14512 50685.05859375 0.09568847070659015 24 -0.6671943664550781 6 Unmodified _TWSLTETYF_ ENST00000582151.1_1_17:7486853-7487033:+|nuORF 7.289230182591677 0.29575926068275815 1 YT{M(Oxidation (M))|F} 3 7 26.44 0 0 2.3061 0 0 717.3336359346933 0 717.3336359346933 0 12.460762528683702 0 0 0 0.3252574989159953 0 0 0 YT{M(Oxidation (M))|F} 2.3061 - 153 + NaN NaN 134349.3 NaN 11405 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14519 63.803 NaN 180510 35 0 15151 0.262 + 21121 PPDRTQLF 8 52 487.25781510850777 NaN 0 487.2574768066406 PEAK HCD FTMS 0 0 0 14512 19738.6953125 0.2661226495801217 -3 0.08827590942382812 7 Unmodified _PPDRTQLF_ REV__ENSG00000149016|ENST00000476907|TUT1;REV__ENST00000463241.2_1_11:62344075-62344783:-|nuORF;REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF;REV__ENST00000526409.5_1_11:62342279-62344783:-|nuORF 5.760428011301431 0.38822285293237185 1 E 1 -1 5.4846 0 0 0.56396 0 0 534.326072256275 306.1101168268188 840.4361890830937 0 0 0 0 0 0 0 0 0 E 0.56396 - 4 + NaN NaN 119058.5 NaN 11406 3111 14512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14521 63.808 NaN 3009000 35 0 512760 0.327 + 29078 TYGEIFEKF 9 120 567.2791460627044 1132.5437391922087 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14520 2791287.5 0.11320860741311435 28 -0.7820930480957031 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 136.39213081522345 0.00021731600835925866 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 107.31 0 0 9.4755 9.4755 92.31 0 0 0 8.521434897169684 8.521434897169684 8.521434897169684 8.521434897169684 0 2.555462187404089 2 1.1738773680566281 0 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}K;{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}[YQ]{I|L};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F} 9.4755;8.723;7.4335;7.2482;7.0092;6.8261;6.4762;6.385;6.3819;6.2556 +;-;-;-;-;-;-;-;-;- + 11170 + NaN NaN 547741.4 NaN 11407 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14522 63.812 NaN 320490 35 0 27512 0.261 + 6898 FPVEHVQLL 9 75 541.3054706011272 1080.5963882690544 2 541.3055419921875 MULTI HCD FTMS 0 0 0 14520 122268.34375 0.2652255214150018 7 -0.17889022827148438 2 Unmodified _FPVEHVQLL_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 43.77239144664712 0.04802738721622131 1 VQ{I|L}{I|L} 4 5 43.245 0 0 4.002 0 0 609.2907582013687 0 609.2907582013687 0 5.386962605902568 0 0 0 1.1307196863200843 0 0 0 + VQ{I|L}{I|L} 4.002 + + 451 NaN NaN 136191.2 NaN 11408 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14523 63.816 NaN 308490 35 0 33847 0.261 + 23326 RIYERPVE 8 59 531.2915868780241 1060.568620822848 2 531.2923583984375 MULTI HCD FTMS 0 0 0 14520 126386.6953125 0.8518907317430738 -2 0.062084197998046875 3 Unmodified _RIYERPVE_ REV__ENSG00000164934|ENST00000612750|DCAF13;REV__ENST00000521716.1_1_8:104427674-104432721:+|nuORF;REV__nc|ENSG00000164934|Q9NV06-2|DCAF13 13.90604991867851 0.4914777452512057 1 VE 2 -1 20.969 0 0 1.9772 0 0 814.4319423409398 0 814.4319423409398 0 1.0475750727131548 0 0 0 0 0 0 0 VE 1.9772 + + 37 NaN NaN 135657.1 NaN 11409 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14524 63.819 NaN 103170 35 0 9655.7 0.261 + 34143 YPAHFGQLECL 11 47 639.3025581268515 1276.590563320503 2 639.3037109375 MULTI HCD FTMS 0 0 0 14520 46112.6015625 0.34458403409029875 7 -0.17889022827148438 4 Unmodified _YPAHFGQLECL_ ENSG00000166747|ENST00000299980|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF;nc|ENSG00000166747|O43747-2|AP1G1 15.248480904072842 0.3242218977034194 1 {I|L}EC{I|L} 4 7 36.938 0 0 2.8935 0 0 800.3602162091812 0 800.3602162091812 0 32.95880017344075 0 0 0 0.5 0 0 0 + {I|L}EC{I|L} 2.8935 + + 30 NaN NaN 99979.8 NaN 11410 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14525 63.822 NaN 396050 35 0 45494 0.263 + 10451 IPDHPDLLL 9 77 516.7900088463182 1031.5654647594363 2 516.7904663085938 MULTI HCD FTMS 0 0 0 14520 80538.1484375 0.49386113438828266 7 -0.17889022827148438 5 Unmodified _IPDHPDLLL_ ENSG00000075539|ENST00000358350|FRYL 20.453626601364224 0.18364154288633264 1 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 8 27.409 0 0 2.6571 0 0 475.382494644005 0 475.382494644005 0 -0.5050555087532729 -0.5050555087532729 0 0 0 0 0.3252574989159953 0 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 2.6571 - 201 + NaN NaN 142641.2 NaN 11411 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14526 63.826 NaN 200220 35 0 22097 0.261 + 8505 HAFSVEPLL 9 60 506.77659810890725 1011.5386432846145 2 506.77703857421875 MULTI HCD FTMS 0 0 0 14520 75754.8125 0.6669935387730025 7 -0.17889022827148438 6 Unmodified _HAFSVEPLL_ ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF 20.453626601364224 0.18364154288633264 1 DEP{I|L}{I|L} 5 5 43.245 0 0 4.2752 0 0 426.22349745918126 0 426.22349745918126 0 27.760847058321687 0 0 0 1.1307196863200843 0 0 0 DEP{I|L}{I|L} 4.2752 - 126 NaN NaN 111652.6 NaN 11412 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14527 63.829 NaN 581300 35 0 84442 0.261 -1 SPGSPVILQM 10 93 522.7726854046417 1043.5308178760833 2 522.7728271484375 MULTI HCD FTMS 0 0 0 14520 76921.578125 0.5816719345812094 -1 0.02606201171875 7 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 22.736283301280096 0.29844449404982915 1 TPN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 8 -1 41.056 0 0 3.9343 0 0 65.08500712652672 0 65.08500712652672 0 34.065950501809326 0 0 0 1.4247425010840047 0 0.25 0.5994850021680094 TPN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 3.9343 - 223 + NaN NaN 172155.8 NaN 11413 3112 14520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14529 63.834 NaN 27635000 35 0 8568000 0.327 + 24687 RYLTVAAVF 9 72 520.3002137463006 1038.5858745594012 2 520.3009643554688 MULTI HCD FTMS 0 0 0 14528 23449304 1 0 0 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 60.07390631473393 0.0174780869009295 1 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 80.46 0 0 7.7471 7.7471 92.635 0 0 0 4.137342758552691 46.19809168210571 4.137342758552691 12.213403050078782 0 2.3494850021680094 0 1.1382104921644451 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVAVA{M(Oxidation (M))|F};[HV]VAVTPAV{M(Oxidation (M))|F};[HV]VPTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVQ{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}AVTRY{I|L}{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]V{M(Oxidation (M))|F};[HV]VPTVQ{I|L}{M(Oxidation (M))|F};[Q{I|L}]VTRY{I|L}{M(Oxidation (M))|F} 7.7471;6.5711;6.1075;5.5789;5.4925;5.466;4.8038;4.367;3.582;3.5275 -;-;-;-;-;-;-;-;-;- 408 NaN NaN 735703.1 NaN 11414 3113 14528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14530 63.838 NaN 790540 35 0 93106 0.261 -1 0 88 526.2815928167875 1050.5486327003748 2 526.783447265625 MULTI HCD FTMS 0 0 0 14528 278401.15625 0.12562302206042109 22 -0.6151237487792969 2 NaN NaN 1 Y[DP]VSVS{I|L} 8 -1 58.894 0 0 5.606 0 0 172.12095839668126 0 172.12095839668126 0 24.156687756324686 0 0 0 1.805462187404089 0 1.1989700043360187 0 Y[DP]VSVS{I|L} 5.606 - 3210 NaN NaN 205372.4 NaN 11415 3113 14528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14531 63.842 NaN 556550 35 0 56243 0.261 + 32822 WVDEMQVQL 9 90 582.2730754085107 1162.5315978838214 2 582.2742919921875 MULTI HCD FTMS 0 0 0 14528 235786.015625 0.6856902562066891 -2 0.05207061767578125 3 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 89.40071534611396 0.0045416704840156395 1 {[RE]|[WV]}DE{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 84.949 0 0 7.3072 7.3072 90.357 0 0 0 6.267186419914097 71.7612048846186 6.267186419914097 9.208187539523749 0 2.305462187404089 0 0.9876954943324545 0.9163865622122673 + + {[RE]|[WV]}DE{M(Oxidation (M))|F}QVQ{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}QV[AG]{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}[AG]VQ{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}[AG]V[AG]{I|L};ERDE{M(Oxidation (M))|F}QVQ{I|L};ERDE{M(Oxidation (M))|F}[AG]VQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VQ{M(Oxidation (M))|F}[HT]C(Carbamidomethyl (C)){I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V[AG]{M(Oxidation (M))|F}[HT]C(Carbamidomethyl (C)){I|L};{[RE]|[WV]}D[NP][YE]Q{I|L};{[RE]|[WV]}YY[YE]Q{I|L} 7.3072;6.5151;6.5151;5.7268;5.2798;4.4877;4.2779;3.1852;2.8142;2.3398 +;-;-;-;-;-;-;-;-;- + 476 NaN NaN 172392.4 NaN 11416 3113 14528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14532 63.845 NaN 329670 35 0 23624 0.261 + 8963 HPDYAEYIF 9 61 577.7610186829062 1153.5074844326123 2 577.7621459960938 MULTI HCD FTMS 0 0 0 14528 65529.6015625 0.7717266576255467 -4 0.11090469360351562 4 Unmodified _HPDYAEYIF_ ENSG00000101040|ENST00000471951|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8 11.640296217721598 0.25978676193971967 1 Y{I|L}{M(Oxidation (M))|F} 3 6 31.995 0 0 2.7737 0 0 712.281541892775 0 712.281541892775 0 12.269987279362624 0 0 0 0.7302046884880937 0 0 0 + Y{I|L}{M(Oxidation (M))|F} 2.7737 + + 96 NaN NaN 138854.2 NaN 11417 3113 14528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14533 63.848 NaN 216160 35 0 27545 0.261 + 6273 FPFHESIL 8 56 495.2577457859312 988.5009386386624 2 495.25848388671875 MULTI HCD FTMS 0 0 0 14528 83860.6015625 0.6712114407673634 -1 0.02600860595703125 5 Unmodified _FPFHESIL_ nc|ENSG00000120802|P42166|TMPO 24.67388899826682 0.4122521268485776 1 S{I|L}{I|L} 3 5 36.114 0 0 3.6534 0 0 657.2855091779312 0 657.2855091779312 0 17.28855930516417 0 0 0 0.5 0 0.7302046884880937 0 + S{I|L}{I|L} 3.6534 + + 102 NaN NaN 118265.1 NaN 11418 3113 14528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14534 63.852 NaN 168540 35 0 20375 0.261 + 11746 KDMQEYFDF 9 57 611.7577778575575 1221.5010027819148 2 611.7576904296875 MULTI HCD FTMS 0 0 0 14528 54576.14453125 0.24963503933949302 16 -0.4436683654785156 6 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 8.155526934196011 0.2891920862272901 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 44.68 0 0 3.6578 0 0 680.2828236310562 0 680.2828236310562 0 41.91626544939236 0 0 0 1.274227503252014 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.6578 - 42 NaN NaN 106903.4 NaN 11419 3113 14528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14536 63.856 NaN 982990 35 0 510680 0.327 -1 0 55 427.30247491207956 852.5903968909591 2 427.3025207519531 MULTI HCD FTMS 0 0 0 14535 731528.0625 0.3810821027215199 -13 0.364166259765625 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.4331 0 0 687.5112323175201 0 687.5112323175201 0 6.728852985038499 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4331 - 13 + NaN NaN 229154.8 NaN 11420 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14537 63.861 NaN 1147300 35 0 90282 0.261 + 930 AYDTVRWEF 9 104 593.7800537416834 1185.5455545501668 2 593.7799072265625 MULTI HCD FTMS 0 0 0 14535 567706.375 0.24617627749396492 -5 0.13358306884765625 2 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 96.93554129104106 0.004344229100022454 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F} 9 0 + 102.63 0 0 8.6567 8.6567 92.473 0 0 0 25.642492736872597 83.65787713959719 25.642492736872597 9.208187539523749 0 2.7302046884880937 2 0.8494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR{I|L}DS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}ATVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[R{I|L}]SWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTK[HA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[CA]|SS}VRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTK{[QN]|[E{I|L}]|[KN]}AE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[R{I|L}]S{I|L}DS{M(Oxidation (M))|F} 8.6567;7.88;7.7859;6.1456;5.9369;5.8358;5.2564;5.201;5.1116;5.066 +;-;-;-;-;-;-;-;-;- + 2613 NaN NaN 259161.5 NaN 11421 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14538 63.864 NaN 522680 35 0 47702 0.261 + 27077 SYMGHFDLL 9 85 549.7497688734081 1097.4849848136162 2 549.7501220703125 MULTI HCD FTMS 0 0 0 14535 195641.875 0.018887566859839843 128 -3.4690093994140625 3 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 1 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 36.414 0 0 3.318 0 0 591.2091583508376 0 591.2091583508376 0 18.967137774837607 0 0 0 0.6861818737241735 0 0.7614393726401688 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.318 + + 331 NaN NaN 159454.5 NaN 11422 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14539 63.868 NaN 394740 35 0 40516 0.261 + 50 AATTVEEIL 9 60 473.7582276739842 945.5019024147684 2 473.7581481933594 MULTI HCD FTMS 0 0 0 14535 257353.796875 0.727288210195485 4 -0.10410308837890625 4 Unmodified _AATTVEEIL_ ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 74.42276476219924 0.007657080072768255 1 EE{I|L}{I|L} 4 5 58.488 0 0 6.1859 0 0 443.2390791442778 0 443.2390791442778 0 42.91447825603967 0 0 0 1.4247425010840047 0 1.2302046884880937 0 + EE{I|L}{I|L} 6.1859 + + 163 NaN NaN 152906.4 NaN 11423 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14540 63.871 NaN 411500 35 0 51492 0.261 + 5159 FFDAELSQM 9 59 552.2393276201218 1102.4641023070435 2 552.2394409179688 MULTI HCD FTMS 0 0 0 14535 216959.90625 0.03417237926002182 57 -1.577880859375 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 51.629811660486645 0.02929079705179888 1 E{I|L}SQ{M(Oxidation (M))|F} 5 4 55.943 0 0 5.0744 0 0 480.20166441817474 0 480.20166441817474 0 46.651603310239906 0 0 0 1.9247425010840047 0 0.3252574989159953 0 + E{I|L}SQ{M(Oxidation (M))|F} 5.0744 + + 193 + NaN NaN 154840.4 NaN 11424 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14541 63.874 NaN 206020 35 0 14813 0.261 -1 0 53 596.9665516079718 1787.8778254241154 3 597.3038940429688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 [YV]VE[QP]DVP 9 -1 38.082 0 0 2.13 0 0 0 758.3420241634998 758.3420241634998 23.478043754416127 0 0 0 0 0 1.6989700043360187 0 0 [YV]VE[QP]DVP 2.13 - 330 NaN NaN 116057.9 NaN 11425 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14542 63.878 NaN 262870 35 0 21506 0.261 + 29463 TYVENLRLL 9 63 560.8217495275421 1119.6289461218842 2 561.3229370117188 MULTI HCD FTMS 0 0 0 14535 83578.15625 0.08021907763422166 23 -0.6481552124023438 7 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 45.739877483867886 0.03899552410870734 1 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 69.376 0 0 6.1963 6.1963 86.241 0 0 0 6.27513725768253 6.27513725768253 6.27513725768253 6.27513725768253 0 2.004432191740108 2 0 0 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VNE{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YT]VGGE{I|L}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}R{I|L}{I|L};[YT]VR{[CP]|[EA]}{[VA]|[{I|L}G]}V{I|L};[YT]VN{[VA]|[{I|L}G]}{I|L}{[NV]|[RG]}K;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EGG{I|L}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}R{[CP]|[EA]}{[VA]|[{I|L}G]}V{I|L};{[{M(Oxidation (M))|F}C]|[YS]}RAE{I|L}{[VA]|[{I|L}G]}V{I|L} 6.1963;5.6359;5.3739;4.5229;3.4929;3.3044;2.9752;2.6705;0.60104;0.47803 +;-;-;-;-;-;-;-;-;- + 383 + NaN NaN 115350.3 NaN 11426 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14543 63.881 NaN 298910 35 0 45306 0.262 -1 0 51 455.66017429197643 909.3057956507529 2 456.1621398925781 MULTI HCD FTMS 0 0 0 14535 15498.150390625 0.21366108338666523 1 -0.029327392578125 8 NaN NaN 1 {NN|[MP]|[D{I|L}]|[EV]}N 3 -1 17.28 0 0 1.9004 0 0 0 564.1296231256154 564.1296231256154 0.29045612817199995 0 0 0 0 0 1.2218487496163564 0 0 {NN|[MP]|[D{I|L}]|[EV]}N 1.9004 - 28 NaN NaN 124197.2 NaN 11427 3114 14535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14545 63.886 NaN 2640100 35 0 544760 0.327 + 827 AVRFATPL 8 90 437.7606221097689 873.5066912863379 2 437.7608337402344 MULTI HCD FTMS 0 0 0 14544 444993.28125 0.8583392716760762 1 -0.022678375244140625 1 Unmodified _AVRFATPL_ REV__ENSG00000104381|ENST00000220822|GDAP1;REV__nc|ENSG00000104381|Q8TB36-2|GDAP1 39.957323273324995 0.23147789240432073 1 {I|L}YTVAR 6 -1 74.047 0 0 8.477 0 0 0 167.08277307681877 167.08277307681877 9.814761492627255 0 0 0 0 1.7984550065040281 1.6989700043360187 0.7302046884880937 0 {I|L}YTVAR 8.477 - 2016 + NaN NaN 490075 NaN 11428 3115 14544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14546 63.89 NaN 979370 35 0 183770 0.261 + 23446 RLPSETYFF 9 64 580.2925245774138 1158.5704962216275 2 580.2929077148438 MULTI HCD FTMS 0 0 0 14544 603691.5625 0.781440828362155 -4 0.10407638549804688 2 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 47.748688679222035 0.03472022231463587 1 [R{I|L}][PS]TEY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 71.297 0 0 6.1539 6.1539 93.542 0 0 0 16.131674952134105 59.324302927043 16.131674952134105 71.29670030985565 0 1.9247425010840047 1.3979400086720375 1.1237125054200234 0 [R{I|L}][PS]TEY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1539 - 77 NaN NaN 230030.2 NaN 11429 3115 14544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14547 63.894 NaN 789670 35 0 62841 0.261 + 20651 PFHSFTFLF 9 94 571.7895560751729 NaN 0 571.7706298828125 PEAK HCD FTMS 0 0 0 14544 55020.1484375 1 0 0 3 Unmodified _PFHSFTFLF_ REV__ENST00000530561.5_1_11:58294471-58294537:-|nuORF 13.50788311687929 0.22978952576613207 1 C{M(Oxidation (M))|F}P[HT]{M(Oxidation (M))|F}{I|L} 7 -1 13.76 0 0 1.2054 0 0 131.1272484187279 162.0555819147094 293.1828303334373 0 0 0 0 0 0 0 0.6549471895720984 0 C{M(Oxidation (M))|F}P[HT]{M(Oxidation (M))|F}{I|L} 1.2054 - 175 + NaN NaN 206177.1 NaN 11430 3115 14544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14548 63.897 NaN 371500 35 0 37712 0.261 + 11455 IYQFIMDRF 9 61 624.8076309459402 1247.6007089586803 2 624.8085327148438 MULTI HCD FTMS 0 0 0 14544 187002.390625 0.7961441915245121 1 -0.022678375244140625 4 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 64.9267550582149 0.010729834900650251 1 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 100.37 0 0 8.0452 8.0452 91.506 0 0 0 75.15539695625556 9.889917747712644 9.889917747712644 9.208187539523749 0 2.9291746928241125 2 0 0.4247425010840047 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]{[WT]|[RM]}T{M(Oxidation (M))|F}D[VG]{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};{I|L}[HA]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 8.0452;7.3071;7.1619;6.4238;5.1779;4.9167;4.7623;4.743;4.4607;3.8382 +;-;+;-;-;-;-;-;-;- + 453 + NaN NaN 147449.5 NaN 11431 3115 14544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14549 63.9 NaN 571090 35 0 81369 0.261 + 25408 SEPDFVAKFY 10 102 601.7903146426586 NaN 0 601.7891845703125 PEAK HCD FTMS 0 0 0 14544 214917.078125 0.9929363866935036 1 -0.022678375244140625 5 Unmodified _SEPDFVAKFY_ ENSG00000179933|ENST00000319074|C14orf119 59.368380827593164 0.05197269514762316 1 YKAVP 5 9 23.409 0 0 1.9482 0 0 165.07076454146096 475.1632715693884 640.2340361108494 0 0 0 0 0 1.5484550065040281 0 0 0.3054621874040891 YKAVP 1.9482 - 998 + NaN NaN 167987.3 NaN 11432 3115 14544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14550 63.904 NaN 437410 35 0 37624 0.261 + 28400 TPFHEIMSL 9 75 537.7677687934661 1073.520984653732 2 537.7683715820312 MULTI HCD FTMS 0 0 0 14544 102346.609375 0.3842534293513784 6 -0.15653228759765625 6 Unmodified _TPFHEIMSL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 25.399314129420986 0.14091189997036632 1 YY{[RE]|[WV]}{I|L}MS{I|L} 8 4 + 46.322 0 0 4.315 4.315 87.947 0 0 0 7.904849854573683 27.625787886405245 7.904849854573683 17.902889807533477 0 0.9247425010840047 1.2218487496163564 0.3252574989159953 0 YY{[RE]|[WV]}{I|L}MS{I|L};[YN]{I|L}[KS]{[{M(Oxidation (M))|F}C]|[YS]}S{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}MS{I|L};[YN]{I|L}[KT][YC(Carbamidomethyl (C))]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[{M(Oxidation (M))|F}C]|[YS]}[KQ]MS{I|L} 4.315;2.6473;2.611;1.8971;0.67271 -;-;-;-;- 174 NaN NaN 148348.5 NaN 11433 3115 14544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14552 63.908 NaN 563210 35 0 63505 0.327 + 27655 TALFVEHVL 9 66 514.7925430059001 1027.5705330786002 2 514.7929077148438 MULTI HCD FTMS 0 0 0 14551 341105.96875 0.6897913650188269 -4 0.1006927490234375 1 Unmodified _TALFVEHVL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 103.74828524460852 0.00396301343438984 1 [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L} 9 0 + 104.59 0 0 10.178 10.178 94.852 0 0 0 8.680540824916392 8.680540824916392 8.680540824916392 9.771212547196626 0 2.9247425010840047 1.6989700043360187 0.6747425010840047 0 + + [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L};[TA]{M(Oxidation (M))|F}{I|L}VEHV{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}[PG]{I|L};[TA]{M(Oxidation (M))|F}{I|L}V[NP][PG]{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[NP][PG]{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}{I|L}[PG];[TA]{M(Oxidation (M))|F}{I|L}V[NP]{I|L}[PG];[TA]{I|L}{M(Oxidation (M))|F}V[NP]{I|L}[PG];[TA]{I|L}[PG]GV{M(Oxidation (M))|F}[PG]{I|L};[TA]{I|L}[PG]GV{M(Oxidation (M))|F}{I|L}[PG] 10.178;9.2273;6.6375;6.4829;6.4606;6.4439;6.2893;6.267;6.264;6.0703 +;-;-;-;-;-;-;-;-;- + 543 NaN NaN 179607.4 NaN 11434 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14553 63.913 NaN 489780 35 0 40843 0.261 + 6723 FPQDRVFML 9 88 584.7944593895264 1167.5743658458528 2 584.7945556640625 MULTI HCD FTMS 0 0 0 14551 260621.546875 0.4454452407017148 11 -0.3107414245605469 2 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 65.47368725323818 0.010552856507075443 1 {M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 2 + 74.293 0 0 6.363 6.363 88.551 0 0 0 53.20082700931911 11.478174818886373 11.478174818886373 9.208187539523749 0 2.048455006504028 0 0.3252574989159953 0.5941876774005248 {M(Oxidation (M))|F}PQDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[AG]DRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[QP]D{M(Oxidation (M))|F}RVYM{I|L};[QP]D{M(Oxidation (M))|F}RV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[QP]DR{M(Oxidation (M))|F}VYM{I|L};[QP]DR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HV][W{I|L}]QPE;[RP][DG]V{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV][HQ]SK{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV][HQ]SKYM{I|L} 6.363;5.5744;3.8569;3.8498;2.7946;2.7874;2.1777;1.845;1.8363;1.3677 -;-;-;-;-;-;-;-;-;- 853 + NaN NaN 161066.9 NaN 11435 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14554 63.916 NaN 469750 35 0 37496 0.261 + 5502 FKQIVYNGF 9 77 558.297682435366 1114.580811937532 2 558.7896118164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FKQIVYNGF_ REV__ENSG00000055917|ENST00000361078|PUM2;REV__ENSG00000134644|ENST00000426105|PUM1;REV__nc|ENSG00000055917|Q8TB72-2|PUM2;REV__nc|ENSG00000055917|Q8TB72-4|PUM2;REV__nc|ENSG00000055917|Q8TB72|PUM2;REV__nc|ENSG00000134644|Q14671-2|PUM1;REV__nc|ENSG00000134644|Q14671-4|PUM1;REV__nc|ENSG00000134644|Q14671|PUM1 34.10243960390752 0.09241788333544565 1 YQDR{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 7 -1 72.868 0 0 6.5377 0 0 112.1041099491484 0 112.1041099491484 0 14.758950235313861 0 0 0 1.392159058960253 0 0.3252574989159953 1.1237125054200234 YQDR{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 6.5377 - 1971 + NaN NaN 165571.3 NaN 11436 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14555 63.92 NaN 218980 35 0 21902 0.261 + 24770 RYPDIRIE 8 52 531.2915868780241 1060.568620822848 2 531.2908935546875 MULTI HCD FTMS 0 0 0 14551 71647.0390625 0.48292621611209374 2 -0.052097320556640625 4 Unmodified _RYPDIRIE_ ENSG00000198843|ENST00000471696|SELENOT 10.073929032068715 0.5196730168178844 1 RY{I|L} 3 5 17.792 0 0 1.6776 0 0 0 625.2963350885374 625.2963350885374 10.801981352645814 0 0 0 0 0 0 0 0 RY{I|L} 1.6776 - 17 + NaN NaN 121850.2 NaN 11437 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14556 63.923 NaN 429320 35 0 38699 0.261 + 3090 EAINVEQAF 9 82 510.75311884095885 1019.4916847487177 2 510.7525634765625 MULTI HCD FTMS 0 0 0 14551 161902.75 1 0 0 5 Unmodified _EAINVEQAF_ ENSG00000075785|ENST00000265062|RAB7A 49.52724829834842 0.03223213920720493 1 VEQA{M(Oxidation (M))|F} 5 4 59.068 0 0 5.7939 0 0 427.20483279734896 0 427.20483279734896 0 47.976306933210054 0 0 0 2.1747425010840047 0 0.3252574989159953 0 + VEQA{M(Oxidation (M))|F} 5.7939 + + 1426 + NaN NaN 144163.1 NaN 11438 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14557 63.926 NaN 425430 35 0 50159 0.261 -1 SPGSPVILQM 10 75 522.7726854046417 1043.5308178760833 2 522.7733154296875 MULTI HCD FTMS 0 0 0 14551 44929.17578125 0.3397491475454425 3 -0.07819747924804688 6 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 29.081581746732265 0.240155558137004 1 QR{I|L}Q{M(Oxidation (M))|F} 5 -1 43.448 0 0 4.1636 0 0 353.20325547549584 0 353.20325547549584 0 37.96388461952553 0 0 0 1.4247425010840047 0 0 0.6549471895720985 QR{I|L}Q{M(Oxidation (M))|F} 4.1636 - 250 + NaN NaN 153980.8 NaN 11439 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14558 63.93 NaN 96502 35 0 4088 0.261 -1 MLPCLCWQL 9 57 590.2718643412558 NaN 0 590.3362426757812 PEAK HCD FTMS 0 0 0 14551 29560.33203125 1 0 0 7 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LPC(Carbamidomethyl (C))LCWQL_ ENST00000589874.2_1_19:1432091-1433000:+|nuORF 12.531546534597751 0.23452071659215576 1 QV 2 -1 14.464 0 0 1.2273 0 0 131.09760944247392 817.2841890924436 948.3817985349176 0 0 0 0 0 0.5 0 0 0 QV 1.2273 - 10 + NaN NaN 102967.4 NaN 11440 3116 14551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14560 63.934 NaN 1029700 35 0 344450 0.326 -1 TAMDVVYAL 9 48 499.74680302113535 997.4790531090707 2 499.74688720703125 MULTI HCD FTMS 0 0 0 14559 608951.4375 0.8952439679230118 2 -0.052173614501953125 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 44.40701690623563 0.04511410083598184 1 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2154427127635 0 533.2154427127635 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 49 NaN NaN 230769.8 NaN 11441 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14561 63.939 NaN 582200 35 0 55320 0.261 + 13311 KYMDVQFDF 9 66 604.7680082675702 1207.5214636019402 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14559 346290.375 0.12727181262628073 19 -0.5339622497558594 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 53.40400417844725 0.026808823219830042 1 {M(Oxidation (M))|F}KY{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 4 + 57.47 0 0 4.7593 4.7593 81.418 0 0 0 4.244974475172043 1.588709367037282 1.588709367037282 1.020599913279625 0 2.4291746928241125 0 1.305462187404089 0 {M(Oxidation (M))|F}KY{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}KY[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[Y{I|L}]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[Y{I|L}]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{NN|[MP]|[D{I|L}]|[EV]}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7593;4.6748;4.6277;4.4163;4.3725;4.3424;4.3161;4.1407;3.8652;3.5798 -;-;-;-;-;-;-;-;-;- 831 + NaN NaN 175493.4 NaN 11442 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14562 63.942 NaN 491250 35 0 60608 0.261 + 33562 YILFNQISI 9 79 555.8126233097881 NaN 0 555.7948608398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YILFNQISI_ REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF 15.847184025352803 0.21527282152051216 1 S{I|L}EKWY 6 -1 25.003 0 0 2.2533 0 0 131.13112351011677 169.0615633600219 300.1926868701387 0 0 0 0 0 0 0 0.28872548999643577 0 S{I|L}EKWY 2.2533 - 144 + NaN NaN 150406.2 NaN 11443 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14563 63.946 NaN 353120 35 0 36794 0.261 + 33100 YDSPREFTGF 10 81 609.7746935515911 1217.534834169982 2 609.7747802734375 MULTI HCD FTMS 0 0 0 14559 214162.0625 0.9788811376595478 -2 0.048702239990234375 4 Unmodified _YDSPREFTGF_ DYSF|p.G545D|1|0.41|ENSG00000135636|chr2:71551152-71551152|G/A|missense_variant 6.2057823575117 0.44245551207394906 1 RTWE{M(Oxidation (M))|F} 5 8 40.49 0 0 3.3255 0 0 480.20184709026285 0 480.20184709026285 0 13.57840941039747 0 0 0 0.5 0 0.3807196863200844 0 RTWE{M(Oxidation (M))|F} 3.3255 - 670 NaN NaN 150980.7 NaN 11444 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14564 63.949 NaN 283480 35 0 30301 0.261 + 19868 NYAYCQVVRE 10 46 622.7905081621901 1243.5664633911802 2 622.790283203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _NYAYCQVVRE_ ENSG00000187790|ENST00000267430|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM 22.736283301280096 0.29844449404982915 1 [YN]A{[DS]|[MA]|[CV]|TT}VYY 8 4 66.617 0 0 5.357 0 0 0 265.1307772272094 265.1307772272094 47.15350013324773 0 0 0 0 2.0994850021680094 1.6989700043360187 0.9247425010840047 0 [YN]A{[DS]|[MA]|[CV]|TT}VYY 5.357 - 148 + NaN NaN 135148 NaN 11445 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14565 63.952 NaN 250280 35 0 24092 0.261 + 24297 RYFPTQALNF 10 56 628.824235180762 1255.633917428324 2 628.8251953125 MULTI HCD FTMS 0 0 0 14559 91972.890625 0.5427175852865431 -3 0.07802963256835938 6 Unmodified _RYFPTQALNF_ ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000169100|ENST00000381401|SLC25A6 31.635753872319068 0.2179907440432224 1 QQA{I|L}N{M(Oxidation (M))|F} 6 5 51.943 0 0 4.1368 0 0 536.2744007794937 0 536.2744007794937 0 36.48570980063916 0 0 0 1.3807196863200843 0 0 0 QQA{I|L}N{M(Oxidation (M))|F} 4.1368 - 200 NaN NaN 123044.2 NaN 11446 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14566 63.956 NaN 357890 35 0 24871 0.262 + 20021 NYIGLINRI 9 90 538.3164166178896 1074.618280302579 2 538.3164672851562 MULTI HCD FTMS 0 0 0 14559 100105.859375 0.01572281643319808 53 -1.4769706726074219 7 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 62.57269311338072 0.013982455292112035 1 [YN]{I|L}G{I|L}{I|L}[RN]{I|L} 9 0 + 67.308 0 0 6.2635 6.2635 92.738 0 0 0 14.322128970061883 52.360921648031024 14.322128970061883 38.34605507340511 0 2.2302046884880937 1.3979400086720375 0 0.9634679910804405 + + [YN]{I|L}G{I|L}{I|L}[RN]{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}[RN]{I|L} 6.2635;2.6951 +;- + 225 NaN NaN 134375.5 NaN 11447 3117 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14568 63.961 NaN 2422300 35 0 397860 0.327 + 29079 TYGEIFEKF 9 119 567.2791460627044 1132.5437391922087 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14567 1705210 0.0691596438729141 34 -0.9532012939453125 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 103.82355648334675 0.003950725192926219 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 99.368 0 0 8.7739 8.7739 91.426 0 0 0 8.151464743253257 8.151464743253257 8.151464743253257 8.151464743253257 0 2.5356668758921828 2 0.6421590589602533 0 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};[YT]GE{M(Oxidation (M))|F}{I|L}[YQ]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 8.7739;8.0541;6.6904;6.28;6.0748;6.0636;5.8868;5.3016;5.2617;4.8754 +;-;-;-;-;-;-;-;-;- + 5149 + NaN NaN 466954.5 NaN 11448 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14569 63.965 NaN 430430 35 0 44154 0.261 + 18559 MVERFQDEF 9 79 600.770280864753 1199.5260087963059 2 600.7702026367188 MULTI HCD FTMS 0 0 0 14567 248711.984375 0.9490670205144884 -1 0.026073455810546875 2 Unmodified _MVERFQDEF_ tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 14.838274106304384 0.23215694253501695 1 WRVTDDD 7 7 52.709 0 0 4.3941 0 0 294.1209889142594 0 294.1209889142594 0 18.591444694250683 0 0 0 1.8494850021680094 0 0.3252574989159953 0 WRVTDDD 4.3941 - 692 NaN NaN 148307.5 NaN 11449 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14570 63.968 NaN 197310 35 0 24070 0.262 + 6274 FPFHESIL 8 55 495.2577457859312 988.5009386386624 2 495.2581787109375 MULTI HCD FTMS 0 0 0 14567 66299.8515625 0.5306570434837853 4 -0.10797119140625 3 Unmodified _FPFHESIL_ nc|ENSG00000120802|P42166|TMPO 40.44857923139169 0.22516712537107883 1 {I|L}{I|L} 2 6 20.969 0 0 2.1213 0 0 744.3212097582585 0 744.3212097582585 0 2.341284356197235 0 0 0 0 0 0 0 + {I|L}{I|L} 2.1213 + + 41 NaN NaN 109332 NaN 11450 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14571 63.972 NaN 514330 35 0 59629 0.261 -1 YPDTDVILM 9 73 541.7573246265175 1081.500096319835 2 541.7567138671875 MULTI HCD FTMS 0 0 0 14567 166184 0.19889548222473508 -9 0.2376861572265625 4 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 28.486842064014134 0.11819662193267319 1 Q{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 45.433 0 0 4.2009 0 0 562.2374142903412 0 562.2374142903412 0 30.818787619909784 0 0 0 1.5 0 0 0 Q{I|L}{I|L}{M(Oxidation (M))|F} 4.2009 - 1002 + NaN NaN 156180.4 NaN 11451 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14572 63.975 NaN 132740 35 0 5058 0.261 + 33086 YDRFFLSVC 9 55 575.2733866018814 NaN 0 575.2743530273438 PEAK HCD FTMS 0 0 0 14567 9024.236328125 0.17009888718052404 5 -0.13077545166015625 5 Unmodified _YDRFFLSVC_ REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF 7.910154910731844 0.25691533546754686 1 S 1 -1 5.4846 0 0 0.47753 0 0 841.4159310633346 217.06223474674064 1058.4781658100753 0 0 0 0 0 0 0 0 0 S 0.47753 + + 12 + NaN NaN 99636.7 NaN 11452 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14573 63.978 NaN 245400 35 0 57310 0.261 + 16657 LWGHRFTF 8 64 532.279705883142 NaN 0 532.2674560546875 PEAK HCD FTMS 0 0 0 14567 18185.45703125 0.2163227433251407 4 -0.10797119140625 6 Unmodified _LWGHRFTF_ ENST00000443035.7_1_15:66044937-66048577:-|nuORF 24.67388899826682 0.38182156912090326 1 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T 6 5 25.155 0 0 2.3674 0 0 165.1014504285775 162.05608545474846 327.157535883326 0 0 0 0 0 0 0 0.9749073637206093 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T 2.3674 - 30 + NaN NaN 120477.3 NaN 11453 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14574 63.982 NaN 126030 35 0 15657 0.261 -1 0 43 637.1067504882812 NaN 0 637.1067504882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 Y 1 -1 6.9897 0 0 0.5497 0 0 251.99034286933744 853.4590548150999 1105.4493976844374 0 0 0 0 0 0 0 0 0 Y 0.5497 - 1 + NaN NaN 118795.6 NaN 11454 3118 14567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14576 63.987 NaN 12841000 35 0 3800500 0.327 + 24688 RYLTVAAVF 9 79 520.3002137463006 1038.5858745594012 2 520.3009033203125 MULTI HCD FTMS 0 0 0 14575 7941760 0.33867785585448507 6 -0.16699981689453125 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 66.45667989310934 0.010234776021261575 1 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 73.681 0 0 7.0943 7.0943 88.854 0 0 0 2.6312881885056782 64.3837976454305 2.6312881885056782 8.538719643217618 0 2.2302046884880937 0 1.1747425010840047 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[VP][HV]TVAAV{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}HVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVAA{M(Oxidation (M))|F}V;[Y{I|L}]RTVAVA{M(Oxidation (M))|F};[YR]{I|L}TVAAV{M(Oxidation (M))|F};[VP][HV]TVAA{M(Oxidation (M))|F}V;[VP][HV]TVAG{I|L}{M(Oxidation (M))|F};[VP][HV]TVAVA{M(Oxidation (M))|F} 7.0943;6.2722;5.4763;5.4547;5.4547;5.3344;4.8008;4.6325;4.6325;4.5122 -;-;-;-;-;-;+;-;-;- + 492 NaN NaN 664525.7 NaN 11455 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14577 63.991 NaN 360690 35 0 34820 0.261 -1 0 84 526.2815928167875 1050.5486327003748 2 526.2819213867188 MULTI HCD FTMS 0 0 0 14575 191520.828125 0.0511977851079033 28 -0.8030014038085938 2 NaN NaN 1 VSVS{I|L} 5 -1 58.756 0 0 5.5929 0 0 547.274745061329 0 547.274745061329 0 45.31234684152075 0 0 0 1.305462187404089 0 0.7742275032520141 0 VSVS{I|L} 5.5929 - 731 NaN NaN 152873.4 NaN 11456 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14578 63.995 NaN 238290 35 0 21976 0.261 + 6737 FPQEVKDLL 9 64 544.8028953888972 1087.5912378445944 2 544.8028564453125 MULTI HCD FTMS 0 0 0 14575 42413.30859375 0.04938628468008581 14 -0.40875244140625 3 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 30.7034409873982 0.10802119112323902 1 KD{I|L}{I|L} 4 5 22.384 0 0 2.0581 0 0 600.291307517775 0 600.291307517775 0 1.9382002601611248 0 0 0 0.2742275032520141 0 0 0 + KD{I|L}{I|L} 2.0581 + + 34 NaN NaN 132128.2 NaN 11457 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14579 63.998 NaN 308250 35 0 20437 0.261 + 3091 EAINVEQAF 9 77 510.75311884095885 1019.4916847487177 2 510.73846435546875 MULTI HCD FTMS 0 0 0 14575 80370.5 0.4964121980633436 3 -0.08187103271484375 4 Unmodified _EAINVEQAF_ ENSG00000075785|ENST00000265062|RAB7A 32.037481411007896 0.10189719824197178 1 VEQA{M(Oxidation (M))|F} 5 4 42.735 0 0 4.1918 0 0 427.2067127912125 0 427.2067127912125 0 26.960090973509878 0 0 0 1.7302046884880937 0 0 0 + VEQA{M(Oxidation (M))|F} 4.1918 + + 912 NaN NaN 127385.6 NaN 11458 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14580 64.001 NaN 230810 35 0 41234 0.261 -1 MYPYIYHVL 9 55 607.7999365255617 1213.5853201179234 2 607.800048828125 MULTI HCD FTMS 0 0 0 14575 51786.80859375 0.3893371312927319 -8 0.20495223999023438 5 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 36.466142684027034 0.08156716203802528 1 TTY 3 -1 23.416 0 0 1.9295 0 0 165.15463115508356 680.2734469049436 845.4280780600272 0 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 TTY 1.9295 - 46 + NaN NaN 118216.8 NaN 11459 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14581 64.005 NaN 171690 35 0 25023 0.263 + 27833 TCPLWLVE 8 57 480.74764721688985 NaN 0 480.7479553222656 PEAK HCD FTMS 0 0 0 14575 58524.9921875 0.7110441944323425 -2 0.052173614501953125 6 Unmodified _TCPLWLVE_ REV__ENST00000406316.6_3_2:51255552-51255684:-|nuORF 23.1484247019978 0.3827488267290106 1 D{I|L}WV 4 -1 22.964 0 0 2.3934 0 0 131.0938163066782 312.09919153385005 443.19300784052825 0 0 0 0 0 0.8807196863200843 0 0 0 D{I|L}WV 2.3934 - 34 + NaN NaN 110081 NaN 11460 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14582 64.008 NaN 165120 35 0 11235 0.261 + 1511 AYVGDLQTL 9 50 490.25823926106835 978.5019255889367 2 490.25848388671875 MULTI HCD FTMS 0 0 0 14575 36518.41015625 0.41084633339263227 -3 0.07819747924804688 7 Unmodified _AYVGDLQTL_ ENSG00000065802|ENST00000264607|ASB1 53.40400417844725 0.026808823219830042 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG]{I|L}QT{I|L} 9 0 + 72.77 0 0 7.4369 7.4369 90.59 0 0 0 12.980690886789503 12.980690886789503 12.980690886789503 9.208187539523749 0 1.9916440611282624 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG]{I|L}QT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG]{I|L}[AG]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG][WR]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VK[WP]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RD]{I|L}[WR];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[RE]|[WV]}[WR];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RD][WR]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VK[HQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QA][KG][WR] 7.4369;6.4958;4.6507;4.5366;4.3483;3.9956;3.9142;3.2937;2.0377 +;-;-;-;-;-;-;-;- + 172 NaN NaN 105377.2 NaN 11461 3119 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14584 64.013 NaN 2484700 35 0 222580 0.327 + 931 AYDTVRWEF 9 119 593.7800537416834 1185.5455545501668 2 593.7800903320312 MULTI HCD FTMS 0 0 0 14583 1559709.25 0.6763415632560122 1 -0.02948760986328125 1 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 143.90916361153978 1.5265063399744E-05 1 AYDTVRWE{M(Oxidation (M))|F} 9 0 + 123.13 0 0 10.386 10.386 95.684 0 0 0 66.12518186346655 13.46787486224656 13.46787486224656 12.367516394294213 0 3.1989700043360187 2 1.8851518780601921 0 + + AYDTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};AYDTVWRE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVREVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WE{M(Oxidation (M))|F};{M(Oxidation (M))|F}SDTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVREW{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRW{M(Oxidation (M))|F}E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]EW{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]W{M(Oxidation (M))|F}E 10.386;9.3431;9.0861;8.7408;8.5664;8.546;8.4437;8.35;7.667;7.5733 +;+;-;-;-;-;-;-;-;- + 5077 + NaN NaN 463305.2 NaN 11462 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14585 64.017 NaN 2242100 35 0 1230900 0.264 -1 0 59 427.30247491207956 852.5903968909591 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14583 1716355 0.8941176777023429 -7 0.17905044555664062 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.3598 0 0 687.5123004327545 0 687.5123004327545 0 5.083559388717376 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3598 - 38 + NaN NaN 431871.2 NaN 11463 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14586 64.021 NaN 1698000 35 0 205620 0.261 + 23434 RLPEPLPSW 9 109 547.8033185266116 1093.5920841200232 2 548.289794921875 MULTI HCD FTMS 0 0 0 14583 61839.734375 0.8549256951555637 1 -0.02948760986328125 3 Unmodified _RLPEPLPSW_ ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF 29.84058131909904 0.11198220037953927 1 VVHA{I|L}DE 7 8 26.975 0 0 2.4666 0 0 165.1184645905294 162.0561464899047 327.17461108043415 0 0 0 0 0 0 0 1.870608661729415 0 VVHA{I|L}DE 2.4666 - 2044 + NaN NaN 355861 NaN 11464 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14587 64.024 NaN 761070 35 0 91714 0.261 + 11849 KFAEEFYSF 9 85 584.2714263400449 1166.5282997468896 2 584.2715454101562 MULTI HCD FTMS 0 0 0 14583 373094.53125 0.3907201363822814 -4 0.10436630249023438 4 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 133.0521902211835 0.0004198702180815479 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 9 0 + 95.759 0 0 8.2089 8.2089 93.134 0 0 0 4.391179610450266 62.650064313529 4.391179610450266 11.269184659718547 0 3.2302046884880937 0 1.3129529932484498 0.3494850021680094 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA][VS]YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}EAEK;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[PA][VS]YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}EAEK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}AEK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[{M(Oxidation (M))|F}E][Q{I|L}]S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A[HC]R[DG]S{M(Oxidation (M))|F} 8.2089;7.2429;6.2785;4.6621;4.6432;3.6977;3.6789;3.4634;3.3946;3.363 +;-;-;-;-;-;-;-;-;- + 1017 NaN NaN 195314.1 NaN 11465 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14588 64.027 NaN 414390 35 0 48810 0.261 + 5160 FFDAELSQM 9 65 552.2390895993532 1102.4636262655063 2 552.2394409179688 MULTI HCD FTMS 0 0 0 14583 148432.078125 0.0431751383927354 -40 1.0550613403320312 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 78.7280429016045 0.006263961847259105 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 54.548 0 0 4.9478 4.9478 81.726 0 0 0 0.6866105550518995 37.196844979456586 0.6866105550518995 0.9813624419633271 0 2.1237125054200234 0 0.6989700043360187 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SM[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAV[YE];{[QS]|[NT]}PY{M(Oxidation (M))|F}AV[YE] 4.9478;4.8588;0.82434;0.2731 +;-;-;- + 284 NaN NaN 153069.6 NaN 11466 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14589 64.031 NaN 273170 35 0 36754 0.261 + 8964 HPDYAEYIF 9 60 577.7610186829062 1153.5074844326123 2 577.7613525390625 MULTI HCD FTMS 0 0 0 14583 48011.84765625 0.5654242027222727 3 -0.0785064697265625 6 Unmodified _HPDYAEYIF_ ENSG00000101040|ENST00000471951|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8 11.640296217721598 0.25978676193971967 1 Y{I|L}{M(Oxidation (M))|F} 3 6 33.94 0 0 2.9423 0 0 712.2820912091812 0 712.2820912091812 0 4.215365405321734 0 0 0 0.7742275032520141 0 0 0 + Y{I|L}{M(Oxidation (M))|F} 2.9423 + + 21 NaN NaN 127824.8 NaN 11467 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14590 64.034 NaN 111630 35 0 8504.5 0.262 + -1 ELLMQSPI 8 49 473.74810151235505 NaN 0 473.7582702636719 PEAK HCD FTMS 0 0 0 14583 22704.33203125 1 0 0 7 Oxidation (M) _ELLM(Oxidation (M))QSPI_ REV__ENSG00000168065|ENST00000301891|SLC22A11;REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11 16.942295170755138 0.3865212393897457 1 {I|L}EE 3 -1 20.93 0 0 2.2137 0 0 131.07482841839777 440.21598002265733 571.2908084410551 0 0 0 0 0 0 0 0.7742275032520141 0 {I|L}EE 2.2137 - 9 + NaN NaN 117603.5 NaN 11468 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14591 64.037 NaN 97710 35 0 4179.8 0.261 -1 WCHMTLVAQM 10 46 638.7843627929688 NaN 0 638.7843627929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _WC(Carbamidomethyl (C))HMTLVAQM_ ENST00000218758.9_1_19:11685532-11685814:-|nuORF 9.38312468134398 0.33215363477037435 1 A 1 -1 16.237 0 0 1.2729 0 0 927.4131775861343 274.0827730768188 1201.4959506629532 0 0 0 0 0 0.9247425010840047 0 0 0 A 1.2729 + + 7 + NaN NaN 108744.6 NaN 11469 3120 14583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14593 64.042 NaN 829320 35 0 145750 0.327 + 23447 RLPSETYFF 9 75 580.2925245774138 1158.5704962216275 2 580.2929077148438 MULTI HCD FTMS 0 0 0 14592 527404.5 0.6826920151992818 2 -0.04901885986328125 1 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 47.748688679222035 0.03472022231463587 1 [R{I|L}][PS]{[ET]|[MV]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 51.118 0 0 4.4122 4.4122 90.157 0 0 0 9.920299789533402 43.44212497064703 9.920299789533402 51.11818737241734 0 1.9247425010840047 0 1.1747425010840047 0 + + [R{I|L}][PS]{[ET]|[MV]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4122 + + 56 NaN NaN 208472.2 NaN 11470 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14594 64.047 NaN 356440 35 0 33125 0.261 + 7158 FSFTMLHFI 9 72 571.7895560751729 NaN 0 571.7706909179688 PEAK HCD FTMS 0 0 0 14592 13754.080078125 0.24998260580392495 6 -0.17688751220703125 2 Unmodified _FSFTMLHFI_ ENSG00000162402|ENST00000294383|USP24 12.531546534597751 0.23452071659215576 1 C{M(Oxidation (M))|F}PK[RD]V 7 8 21.035 0 0 1.8427 0 0 131.12910522605222 162.02283655338127 293.1519417794335 0 0 0 0 0 0 0 0.9476212463643423 0 C{M(Oxidation (M))|F}PK[RD]V 1.8427 - 210 + NaN NaN 142969.1 NaN 11471 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14595 64.05 NaN 731030 35 0 45865 0.261 + 27163 SYNNFFRMF 9 88 621.2740788742191 1240.533604815238 2 621.2743530273438 MULTI HCD FTMS 0 0 0 14592 397050.125 0.0716681970197014 -7 0.18585968017578125 3 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 140.63315402491853 1.8728231636916273E-05 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 106.35 0 0 8.5728 8.5728 92.364 0 0 0 85.37909996297415 10.642492736872597 10.642492736872597 9.208187539523749 0 2.7658715643802765 2 0 0.805462187404089 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.5728;7.8305;7.8305;7.3151;7.0917;6.5728;6.5728;5.667;5.1848;5.1206 +;-;-;+;-;-;-;-;-;- + 1465 + NaN NaN 194987.5 NaN 11472 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14596 64.054 NaN 1045600 35 0 231030 0.264 + 824 AVPPLHAGL 9 75 437.7606221097689 873.5066912863379 2 437.7607727050781 MULTI HCD FTMS 0 0 0 14592 129205.296875 0.2492216963475304 7 -0.21228790283203125 4 Unmodified _AVPPLHAGL_ ENSG00000128242|ENST00000406361|GAL3ST1 45.7499826716795 0.03894913563566938 1 {I|L}YTVRA 6 8 61.464 0 0 7.0364 0 0 0 167.08254419498283 167.08254419498283 24.653500133247732 0 0 0 0 1.3252574989159953 1.6989700043360187 0.3252574989159953 0 {I|L}YTVRA 7.0364 - 614 + NaN NaN 235270.3 NaN 11473 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14597 64.057 NaN 164980 35 0 15658 0.261 + 11456 IYQFIMDRF 9 47 624.8076309459402 1247.6007089586803 2 624.80810546875 MULTI HCD FTMS 0 0 0 14592 74309.75 0.3163664145597797 7 -0.21228790283203125 5 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 55.23464941255904 0.024247875903973527 1 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6 3 83.365 0 0 6.682 0 0 0 433.1847323053344 433.1847323053344 64.78138143936619 0 0 0 0 2.110924374808178 2 0 0.3494850021680094 + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.682 + + 143 + NaN NaN 106953.1 NaN 11474 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14598 64.06 NaN 233840 35 0 20217 0.261 + -1 MDELHCLLG 9 58 544.2489355532393 1086.4833181732786 2 544.2490234375 MULTI HCD FTMS 0 0 0 14592 29200.8203125 0.08985188317775566 16 -0.4622955322265625 6 Carbamidomethyl (C) _MDELHC(Carbamidomethyl (C))LLG_ REV__ENSG00000204301|ENST00000375023|NOTCH4 4.3292370932331545 0.3181982124262546 1 W 1 -1 1.5938 0 0 0.14669 0 0 243.08135391722232 654.3202608697874 897.4016147870097 0 0 0 0 0 0 0 0 0 W 0.14669 - 9 + NaN NaN 116235.8 NaN 11475 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14599 64.064 NaN 124000 35 0 7908.9 0.261 + 24910 RYRLEVPE 8 53 531.2915868780241 1060.568620822848 2 531.2923583984375 MULTI HCD FTMS 0 0 0 14592 37979.86328125 0.255997622551699 7 -0.21228790283203125 7 Unmodified _RYRLEVPE_ ENSG00000254521|ENST00000291707|SIGLEC12;nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 3.5964929083625545 0.5366564765791996 1 RY 2 6 14.949 0 0 1.4095 0 0 0 738.380528712522 738.380528712522 8.494850021680094 0 0 0 0 0 0 0 0 + RY 1.4095 + + 14 + NaN NaN 101160.2 NaN 11476 3121 14592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14601 64.068 NaN 601260 35 0 66684 0.327 + 27656 TALFVEHVL 9 62 514.7925430059001 1027.5705330786002 2 514.7926635742188 MULTI HCD FTMS 0 0 0 14600 283162.0625 0.5726160299369472 2 -0.0556182861328125 1 Unmodified _TALFVEHVL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 103.74828524460852 0.00396301343438984 1 [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L} 9 0 + 103.4 0 0 10.062 10.062 98.073 0 0 0 14.917665879116626 14.917665879116626 14.917665879116626 35.63100339696028 0 2.75 1.6989700043360187 0.7302046884880937 0 + + [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}[PG]{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[HV]E{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[NP][PG]{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}{I|L}[PG];[TA]{I|L}{M(Oxidation (M))|F}V[NP]{I|L}[PG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TA]VEHV{I|L};[{M(Oxidation (M))|F}T][{I|L}A]VEHV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TA]V[NP]{I|L}[PG];[{M(Oxidation (M))|F}T][{I|L}A]V[NP]{I|L}[PG] 10.062;6.5947;6.4802;6.4178;6.401;6.2241;5.4395;4.9306;3.5478;3.039 +;-;-;-;-;-;-;-;-;- + 294 NaN NaN 172181.2 NaN 11477 3122 14600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14602 64.073 NaN 374510 35 0 20056 0.261 + 23051 RDTFRFKF 8 79 558.8012288345176 NaN 0 558.7901611328125 PEAK HCD FTMS 0 0 0 14600 9993.572265625 1 0 0 2 Unmodified _RDTFRFKF_ REV__ENSG00000167207|ENST00000647318|NOD2;REV__nc|ENSG00000167207|Q9HC29|NOD2 20.453626601364224 0.3843868670602312 1 YQDR{M(Oxidation (M))|F}K 6 -1 28.894 0 0 2.59 0 0 113.10281059696634 162.0560701959594 275.15888079292574 0 0 0 0 0 0.5 0 0 0.805462187404089 YQDR{M(Oxidation (M))|F}K 2.59 - 497 + NaN NaN 155766.5 NaN 11478 3122 14600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14603 64.076 NaN 208560 35 0 35938 0.261 + 15792 LPHISDVVL 9 54 496.7923930431718 991.5702331531436 2 496.79254150390625 MULTI HCD FTMS 0 0 0 14600 97863.6796875 0.7976528540274157 2 -0.0556182861328125 3 Unmodified _LPHISDVVL_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 16.942295170755138 0.21397866736869717 1 VV{I|L} 3 6 28.812 0 0 2.9057 0 0 662.3366566388687 0 662.3366566388687 0 13.327731244245342 0 0 0 0.5 0 0 0 + VV{I|L} 2.9057 + + 20 NaN NaN 105918.9 NaN 11479 3122 14600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14604 64.08 NaN 359290 35 0 98147 0.261 -1 0 57 454.6623418148364 907.3101306964728 2 454.66253662109375 MULTI HCD FTMS 0 0 0 14600 104812.65625 0.5398052245954142 8 -0.2483673095703125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.7066 0 0 742.2312102636588 0 742.2312102636588 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7066 - 7 + NaN NaN 148046.8 NaN 11480 3122 14600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14605 64.083 NaN 216170 35 0 14941 0.261 + -1 PMAEELNL 8 56 466.72323954393397 NaN 0 466.7232666015625 PEAK HCD FTMS 0 0 0 14600 22217.48828125 0.3521938439360764 10 -0.3040008544921875 5 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.38822285293237185 1 N{I|L} 2 -1 14.464 0 0 1.5529 0 0 131.09751553239477 570.186943908863 701.2844594412577 0 0 0 0 0 0.3494850021680094 0 0 0 N{I|L} 1.5529 + + 22 + NaN NaN 111523.7 NaN 11481 3122 14600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14606 64.086 NaN 350670 35 0 49976 0.261 -1 SPGSPVILQM 10 80 522.7726854046417 1043.5308178760833 2 522.7727661132812 MULTI HCD FTMS 0 0 0 14600 80994.3515625 0.6124697687162795 9 -0.2745513916015625 6 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 17.11289562659939 0.35104376501799556 1 {I|L}Q{M(Oxidation (M))|F} 3 -1 38.94 0 0 3.7316 0 0 637.3429914582645 0 637.3429914582645 0 21.95046257204389 0 0 0 1.274227503252014 0 0 0 {I|L}Q{M(Oxidation (M))|F} 3.7316 + + 285 NaN NaN 143749.2 NaN 11482 3122 14600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14608 64.091 NaN 2060700 35 0 322560 0.327 + 29080 TYGEIFEKF 9 114 567.2791460627044 1132.5437391922087 2 567.2794799804688 MULTI HCD FTMS 0 0 0 14607 1239160.75 0.050257690355612 39 -1.0880050659179688 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 125.0377797344192 0.0009059125702818869 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 95.337 0 0 8.418 8.418 95.542 0 0 0 14.50420879168918 14.973024840566467 14.50420879168918 23.42941036290071 0 2.504432191740108 2 0.6421590589602533 0.2302046884880938 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};TY[YV][PS]EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YT][YV][PS]EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KT{I|L} 8.418;6.3492;5.76;5.7484;5.6301;5.1238;5.0139;4.9092;4.8654;4.7162 +;-;-;-;-;-;-;-;-;- + 5225 + NaN NaN 401986.5 NaN 11483 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14609 64.096 NaN 528470 35 0 46335 0.261 -1 KYMDVQFDF 9 83 604.7680082675702 1207.5214636019402 2 604.768310546875 MULTI HCD FTMS 0 0 0 14607 263982.0625 0.09702110719998824 25 -0.7144699096679688 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 69.33821966488729 0.009302356455414924 1 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 -1 63.537 0 0 5.2618 0 0 438.1945973126969 0 438.1945973126969 0 48.92281585743653 0 0 0 1.8807196863200843 0 0 1.110924374808178 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.2618 - 1657 NaN NaN 186749.1 NaN 11484 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14610 64.099 NaN 426650 35 0 44404 0.261 + 684 APVFRDYVF 9 91 557.2902182211232 1112.5658835090462 2 557.2901000976562 MULTI HCD FTMS 0 0 0 14607 141535 0.7730205399718604 -2 0.04901885986328125 3 Unmodified _APVFRDYVF_ ENSG00000093072|ENST00000399837|ADA2 45.739877483867886 0.03899552410870734 1 APV{M(Oxidation (M))|F}[EP][HA]V{M(Oxidation (M))|F} 10 4 + 38.201 0 0 3.4336 3.4336 81.016 0 0 0 11.607033196197037 1.614751552698607 1.614751552698607 3.5733249643126754 0 1.3252574989159953 0 0.28872548999643577 0 APV{M(Oxidation (M))|F}[EP][HA]V{M(Oxidation (M))|F};APV{M(Oxidation (M))|F}[H{I|L}]ADP{M(Oxidation (M))|F};A[HC]N{I|L}RRP{M(Oxidation (M))|F};APV{M(Oxidation (M))|F}[H{I|L}][TP][MT] 3.4336;3.1124;2.3864;0.42061 -;-;-;- 442 + NaN NaN 146116.7 NaN 11485 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14611 64.103 NaN 203550 35 0 38191 0.261 + 8048 GHEDSIVEWF 10 61 609.7746935515911 1217.534834169982 2 609.7745361328125 MULTI HCD FTMS 0 0 0 14607 98198.4296875 0.4488404222801184 4 -0.12786865234375 4 Unmodified _GHEDSIVEWF_ REV__ENSG00000104833|ENST00000264071|TUBB4A;REV__ENSG00000137267|ENST00000333628|TUBB2A;REV__ENSG00000137285|ENST00000259818|TUBB2B;REV__ENSG00000176014|ENST00000317702|TUBB6;REV__ENSG00000188229|ENST00000340384|TUBB4B;REV__ENSG00000196230|ENST00000327892|TUBB;REV__ENSG00000258947|ENST00000315491|TUBB3;REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF;REV__ENST00000417736.2_1_18:12308439-12326126:+|nuORF;REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF;REV__ENST00000518096.1_1_8:30209523-30210210:+|nuORF;REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF;REV__ENST00000587204.1_1_18:12308291-12311096:+|nuORF;REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF 3.2813086475875832 0.45793521633868084 1 WE{M(Oxidation (M))|F} 3 -1 21.911 0 0 1.7996 0 0 737.3338490216812 0 737.3338490216812 0 16.84955642535897 0 0 0 0.2614393726401688 0 0 0 WE{M(Oxidation (M))|F} 1.7996 - 27 NaN NaN 121303.8 NaN 11486 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14612 64.106 NaN 313380 35 0 26020 0.261 + 24298 RYFPTQALNF 10 67 628.824235180762 1255.633917428324 2 628.8250122070312 MULTI HCD FTMS 0 0 0 14607 90802.78125 0.5358129536042533 3 -0.088470458984375 5 Unmodified _RYFPTQALNF_ ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000169100|ENST00000381401|SLC25A6 15.738622578938676 0.3638982514236938 1 A{I|L}N{M(Oxidation (M))|F} 4 6 38.175 0 0 3.0403 0 0 792.3920842531459 0 792.3920842531459 0 14.643331241078172 0 0 0 0.7742275032520141 0 0 0 + A{I|L}N{M(Oxidation (M))|F} 3.0403 + + 168 NaN NaN 145409.9 NaN 11487 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14613 64.109 NaN 388930 35 0 136510 0.264 + 7624 FYIKSSGLDLI 11 46 419.23601160862864 1254.686205426086 3 419.2363586425781 MULTI HCD FTMS 0 0 0 14607 113998.7109375 1 0 0 6 Unmodified _FYIKSSGLDLI_ REV__ENSG00000187554|ENST00000642603|TLR5 9.764250979337305 0.37200617284565546 1 {I|L}{I|L} 2 -1 29.776 0 0 2.3732 0 0 1010.5075741777091 0 1010.5075741777091 0 14.291746928241125 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L} 2.3732 + + 15 NaN NaN 146741.7 NaN 11488 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14614 64.113 NaN 338210 35 0 62638 0.261 -1 IYQFIMDRF 9 51 624.8076309459402 1247.6007089586803 2 625.7889404296875 MULTI HCD FTMS 0 0 0 14607 21372.859375 0.2936993778124183 10 -0.3040771484375 7 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 11.494710602746466 0.2610445893512368 1 E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3 -1 12.319 0 0 0.98745 0 0 843.398241111525 0 843.398241111525 0 1.7293052809020555 0 0 0 0.4247425010840047 0 0 0 E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 0.98745 - 47 NaN NaN 153479.5 NaN 11489 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14615 64.116 NaN 166450 35 0 20598 0.261 + 29464 TYVENLRLL 9 52 560.8217495275421 1119.6289461218842 2 560.8211669921875 MULTI HCD FTMS 0 0 0 14607 36494.3828125 0.02233793115399906 32 -0.8948211669921875 8 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 33.4449034751529 0.0954363425218424 1 [YT]VD[Q{I|L}]R{I|L}{I|L} 9 2 + 60.116 0 0 5.3693 5.3693 82.59 0 0 0 1.2691846597185474 1.2691846597185474 1.2691846597185474 1.2691846597185474 0 1.805462187404089 2 0 0 [YT]VD[Q{I|L}]R{I|L}{I|L};[YT]VE{[QV]|[N{I|L}]|[RA]|[KV]}R{I|L}{I|L};{[DS]|[MA]|[CV]|TT}[Y{I|L}][Q{I|L}]R{I|L}{I|L} 5.3693;5.2559;1.3358 -;+;- + 65 NaN NaN 112699.2 NaN 11490 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14616 64.119 NaN 95917 35 0 26930 0.261 -1 NYAWVYYHM 9 37 631.7669504578528 NaN 0 632.032958984375 PEAK HCD FTMS 0 0 0 14607 27227.810546875 1 0 0 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 2.302733041254933 0.2840881193086663 1 YC(Carbamidomethyl (C)) 2 -1 8.5835 0 0 0.68041 0 0 414.03285003504294 521.3736055963499 935.4064556313929 0 0 0 0 0 0 0 0 0 YC(Carbamidomethyl (C)) 0.68041 - 7 + NaN NaN 103830.4 NaN 11491 3123 14607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14618 64.124 NaN 1288400 35 0 150840 0.327 + 21856 QAVQVDVEL 9 67 500.7690971040936 999.5236412749872 2 500.769287109375 MULTI HCD FTMS 0 0 0 14617 637270.0625 0.6759317982686853 -4 0.11132049560546875 1 Unmodified _QAVQVDVEL_ ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 122.17920374332846 0.0010792739174387011 1 QVDVE{I|L} 6 3 80.733 0 0 8.0772 0 0 298.16319472480626 0 298.16319472480626 0 56.788384143273916 0 0 0 2.1989700043360187 0 0.9876954943324545 1.3116042352767734 + QVDVE{I|L} 8.0772 + + 593 NaN NaN 286541.7 NaN 11492 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14619 64.129 NaN 1170600 35 0 168260 0.261 + 34307 YPDTDVILM 9 81 541.7573246265175 1081.500096319835 2 541.757568359375 MULTI HCD FTMS 0 0 0 14617 589171.1875 0.7051430188870909 -3 0.0818328857421875 2 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 63.562846038646086 0.012597299157545023 1 TNS[KP]V{I|L}{I|L}{M(Oxidation (M))|F} 9 5 59.575 0 0 5.5086 0 0 63.9892395282945 0 63.9892395282945 0 44.380843058906834 0 0 0 1.5 0 0.7742275032520141 0 TNS[KP]V{I|L}{I|L}{M(Oxidation (M))|F} 5.5086 - 1121 + NaN NaN 258451.3 NaN 11493 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14620 64.132 NaN 340890 35 0 27267 0.261 + 3283 EEFELLGKAY 10 76 599.8031626770636 1197.591772420927 2 599.8026123046875 MULTI HCD FTMS 0 0 0 14617 130120.0703125 0.7636958981245365 1 -0.029510498046875 3 Unmodified _EEFELLGKAY_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;nc|ENSG00000184110|Q99613-2|EIF3C 90.13494162714682 0.000992056157953851 1 EE{M(Oxidation (M))|F}E{I|L}{I|L}GKAY 10 0 + 71.138 0 0 5.9401 5.9401 83.027 0 0 0 0.23001272063737588 0.23001272063737588 0.23001272063737588 0.23001272063737588 0 2.555462187404089 0 0 0 + + EE{M(Oxidation (M))|F}E{I|L}{I|L}GKAY;[{M(Oxidation (M))|F}E]{I|L}EE{I|L}GKAY;[RN]KG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AGKAY;[RN]KG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKAY;EE{M(Oxidation (M))|F}E{I|L}{I|L}[KQ]Y;[{M(Oxidation (M))|F}E]{I|L}EE{I|L}[KQ]Y;[RN]KG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[KQ]Y;[RN]KG{I|L}{I|L}EE[HC] 5.9401;5.9209;4.7361;3.8323;3.5595;2.9567;2.3519;1.461 +;-;-;-;-;-;-;- + 732 + NaN NaN 154117.8 NaN 11494 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14621 64.135 NaN 345610 35 0 35202 0.261 -1 PYMDSPQSIGF 11 72 629.2771150152156 1256.539677097231 2 629.7787475585938 MULTI HCD FTMS 0 0 0 14617 100675.140625 0.7107310397714086 -4 0.11132049560546875 4 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 30.7034409873982 0.19682282685441074 1 S{I|L}G{M(Oxidation (M))|F} 4 -1 53.175 0 0 4.2319 0 0 834.3233043498976 0 834.3233043498976 0 43.34357025103624 0 0 0 1.5 0 0.9247425010840047 0 S{I|L}G{M(Oxidation (M))|F} 4.2319 + + 234 NaN NaN 138370.2 NaN 11495 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14622 64.139 NaN 701970 35 0 111550 0.263 + 25222 SAQIELDSL 9 66 488.2532305834015 974.491908233603 2 488.25323486328125 MULTI HCD FTMS 0 0 0 14617 273300.09375 0.3046198077485199 -3 0.0818328857421875 5 Unmodified _SAQIELDSL_ REV__ENSG00000162086|ENST00000669516|ZNF75A;REV__nc|ENSG00000162086|Q96N20|ZNF75A 92.65332237495696 0.004456439685314431 1 {[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L} 9 -1 + 77.756 0 0 7.9792 7.9792 86.578 0 0 0 8.481362441963327 16.478174818886373 8.481362441963327 0.2422750325201406 0 1.75 1.2218487496163564 1.2302046884880937 0.6861818737241735 {[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L};{[TV]|[{I|L}S]}D{[NV]|[RG]}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[TV]|[{I|L}S]}D{I|L}{[NV]|[RG]}DS{I|L};{[CA]|SS}[KP]E{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[TV]|[{I|L}S]}D{I|L}E[QA]S{I|L};{[TV]|[{I|L}S]}[PG]{[CA]|SS}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};{[TV]|[{I|L}S]}[QA]ES{NN|[MP]|[D{I|L}]|[EV]}{I|L} 7.9792;7.9543;7.1088;7.0602;6.8248;6.2147;6.0838;5.8712;5.2383;4.4123 -;-;-;-;-;-;-;-;-;- 210 NaN NaN 193801.6 NaN 11496 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14623 64.142 NaN 222120 35 0 18360 0.261 -1 SFDGIIAMM 9 61 508.7247679645223 1015.4349829958446 2 508.7253723144531 MULTI HCD FTMS 0 0 0 14617 59208.546875 0.8308909189899625 -3 0.0818328857421875 6 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 21.74664581756881 0.17247014374749275 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 9 -1 + 31.092 0 0 3.062 3.062 80.932 0 0 0 3.9524249272868452 4.137342758552695 3.9524249272868452 3.9524249272868452 0 1 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[QN]|[E{I|L}]|[KN]}[YN]{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}[TP]A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.062;2.6727;0.18025 -;-;- 117 NaN NaN 123624.1 NaN 11497 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14624 64.145 NaN 206840 35 0 28524 0.261 + 28604 TQIHGLFTF 9 63 532.2805577477582 NaN 0 532.2676391601562 PEAK HCD FTMS 0 0 0 14617 22164.4921875 0.942403081269479 -1 0.03281402587890625 7 Unmodified _TQIHGLFTF_ REV__ENSG00000112159|ENST00000369393|MDN1;REV__MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant 7.910154910731844 0.25691533546754686 1 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T 6 -1 18.773 0 0 1.7668 0 0 165.10364371641623 162.05585657291252 327.1595002893288 0 0 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T 1.7668 - 40 + NaN NaN 112751.6 NaN 11498 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14625 64.149 NaN 188020 35 0 27522 0.262 + 22214 QLRQDVCLCQP 11 56 434.88225862998394 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 14617 68208.9765625 0.7738506821444798 35 -0.97998046875 8 Unmodified _QLRQDVCLCQP_ REV__ENST00000361906.7_1_22:38616937-38617486:-|nuORF 2.0839675508343545 0.3362085276781715 1 VD 2 -1 10.969 0 0 1.2641 0 0 128.36093952383663 522.2700899713499 650.6310294951866 0 0 0 0 0 0 0 0 0 VD 1.2641 - 10 + NaN NaN 114197.9 NaN 11499 3124 14617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14627 64.154 NaN 5560100 35 0 1536900 0.327 + 24689 RYLTVAAVF 9 90 520.3002137463006 1038.5858745594012 2 520.3006591796875 MULTI HCD FTMS 0 0 0 14626 2995463.5 0.12774210697255664 12 -0.3509521484375 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 53.832793166522166 0.026208976789938845 1 VAAV{M(Oxidation (M))|F} 5 4 53.756 0 0 5.1759 0 0 533.2967396466812 0 533.2967396466812 0 46.76599703664159 0 0 0 1.8807196863200843 0 0 0 + VAAV{M(Oxidation (M))|F} 5.1759 + + 296 NaN NaN 726534.3 NaN 11500 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14628 64.158 NaN 988160 35 0 75757 0.261 + 932 AYDTVRWEF 9 97 593.7800537416834 1185.5455545501668 2 593.7801513671875 MULTI HCD FTMS 0 0 0 14626 398406.84375 0.17276239626954112 6 -0.189422607421875 2 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 100.7086487251713 0.004245359191255521 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F} 9 0 + 107.33 0 0 9.0533 9.0533 90.435 0 0 0 4.8290220443144705 4.8290220443144705 4.8290220443144705 4.8290220443144705 0 2.75 2 1.1237125054200234 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};AYDTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}ATVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[KS]QQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[CA]|SS}VRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KA][HT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KA][KT]NE{M(Oxidation (M))|F} 9.0533;8.646;8.2766;7.5998;6.6089;6.2157;5.491;5.3005;4.5034;4.4184 +;+;-;-;-;-;-;-;-;- + 1787 NaN NaN 242784.7 NaN 11501 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14629 64.162 NaN 477930 35 0 52975 0.261 + 10900 IWPLHWSL 8 78 526.2915105528058 NaN 0 526.2817993164062 PEAK HCD FTMS 0 0 0 14626 6811.39453125 0.280007428466684 -2 0.06232452392578125 3 Unmodified _IWPLHWSL_ REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|26 26.34127834903884 0.38080804198364926 1 SVW 3 -1 16.995 0 0 1.6177 0 0 131.10723958400212 544.2520468837354 675.3592864677375 0 0 0 0 0 0 0 0.3807196863200844 0 SVW 1.6177 - 250 + NaN NaN 160405.8 NaN 11502 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14630 64.165 NaN 323600 35 0 27875 0.261 + 3284 EEFELLGKAY 10 69 599.8031626770636 1197.591772420927 2 599.8043212890625 MULTI HCD FTMS 0 0 0 14626 97651.9453125 0.5731351812209527 2 -0.06554412841796875 4 Unmodified _EEFELLGKAY_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;nc|ENSG00000184110|Q99613-2|EIF3C 83.42873516780209 0.0016734765818451427 1 [{M(Oxidation (M))|F}E]{I|L}EE{I|L}GKAY 10 3 + 74.645 0 0 6.2329 6.2329 85.029 0 0 0 3.454387282529794 3.454387282529794 3.454387282529794 3.454387282529794 0 2.5 0 1.9802046884880937 0 [{M(Oxidation (M))|F}E]{I|L}EE{I|L}GKAY;EE{M(Oxidation (M))|F}E{I|L}{I|L}GKAY;[RN]KG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AGKAY;{[QD]|[EN]|[WG]|[KD]|[RS]}{[HG]|PP}A[HD]GKAY;{[QD]|[EN]|[WG]|[KD]|[RS]}{[HG]|PP}[WH]GKAY;[RN]KG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKAY;EE{M(Oxidation (M))|F}E{I|L}{I|L}[KQ]Y;{[QD]|[EN]|[WG]|[KD]|[RS]}HG{I|L}{I|L}E[HS]Y;[{M(Oxidation (M))|F}E]{I|L}EE{I|L}[KQ]Y;[RN]KG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[KQ]Y 6.2329;5.9445;4.7143;4.6797;4.382;3.8106;3.2497;3.0203;3.0115;2.0159 -;+;-;-;-;-;-;-;-;- + 782 NaN NaN 138643.5 NaN 11503 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14631 64.168 NaN 107260 35 0 8452.8 0.262 + 145 AEGDLVRLL 9 46 493.28744016820156 984.5603274032031 2 493.28802490234375 MULTI HCD FTMS 0 0 0 14626 44180.66796875 0.8977676482835556 1 -0.02614593505859375 5 Unmodified _AEGDLVRLL_ ENSG00000100365|ENST00000248899|NCF4 36.506200033944 0.08138327636155518 1 {[CP]|[EA]}[DG]{I|L}VR{I|L}{I|L} 9 0 + 42.425 0 0 4.3091 4.3091 83.534 0 0 0 1.6330312844383599 1.6330312844383599 1.6330312844383599 7.275071725447404 0 2.2302046884880937 0 0 0 + + {[CP]|[EA]}[DG]{I|L}VR{I|L}{I|L};{[CP]|[EA]}{[RE]|[WV]}VR{I|L}{I|L};{[CP]|[EA]}[DG]{I|L}RV{I|L}{I|L};{[CP]|[EA]}{[RE]|[WV]}RV{I|L}{I|L} 4.3091;3.5702;3.0913;2.3524 +;-;-;- + 52 + NaN NaN 113108 NaN 11504 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14632 64.172 NaN 214950 35 0 35193 0.261 + 25454 SEYYRPEI 8 63 528.7555575197049 NaN 0 528.7550659179688 PEAK HCD FTMS 0 0 0 14626 38015.24609375 0.7138869861330546 -2 0.06232452392578125 6 Unmodified _SEYYRPEI_ REV__ENSG00000164929|ENST00000309982|BAALC;REV__nc|ENSG00000164929|Q8WXS3-1|BAALC;REV__nc|ENSG00000164929|Q8WXS3-3|BAALC;REV__nc|ENSG00000164929|Q8WXS3-4|BAALC;REV__nc|ENSG00000164929|Q8WXS3-5|BAALC;REV__nc|ENSG00000164929|Q8WXS3-6|BAALC 14.838274106304384 0.38780017429789254 1 P 1 -1 10.485 0 0 0.99333 0 0 698.306789212909 257.1147554986938 955.4215447116028 0 0 0 0 0 0.5 0 0 0 P 0.99333 + + 27 + NaN NaN 127702.6 NaN 11505 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14633 64.175 NaN 278160 35 0 13731 0.261 -1 IMWRNSSL 8 81 511.7598995748927 1021.5052462165854 2 511.76055908203125 MULTI HCD FTMS 0 0 0 14626 47329.43359375 0.4133686677123645 -3 0.0851287841796875 7 Oxidation (M) _IM(Oxidation (M))WRNSSL_ nc|ENSG00000137502|Q15771-2|RAB30 23.1484247019978 0.4234759064137959 1 [QA]VQVDV[YT] 9 -1 + 34.103 0 0 3.3385 3.3385 79.87 0 0 0 1.8791654952092856 1.2763625255165323 1.2763625255165323 1.2763625255165323 0 0 0 0 0 [QA]VQVDV[YT];[QA]VQVDYS{I|L};[QA]V[AG]VDV[YT];[QA]V[AG]VDYS{I|L};MV[VP]{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F};MV[VP]V{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HD]K[HM]{I|L};{NN|[MP]|[D{I|L}]|[EV]}[HM][HK]E{I|L};{NN|[MP]|[D{I|L}]|[EV]}[HM]V{[HG]|PP}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[HM]{I|L} 3.3385;3.2135;2.437;2.3121;2.1834;1.8482;1.7489;1.6136;1.4817;1.3319 -;-;-;-;-;-;-;-;-;- 497 + NaN NaN 140693.6 NaN 11506 3125 14626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14635 64.18 NaN 2403800 35 0 1278800 0.327 -1 0 70 427.30247491207956 852.5903968909591 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14634 1757152.875 0.9153709156689583 -1 0.02614593505859375 1 NaN NaN 1 {I|L} 1 -1 5.4846 0 0 0.64328 0 0 190.13038820130913 546.3526565313322 736.4830447326412 0 0 0 0 0 0 0 0 0 {I|L} 0.64328 - 25 + NaN NaN 436226.2 NaN 11507 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14636 64.184 NaN 947620 35 0 120700 0.261 + 11850 KFAEEFYSF 9 91 584.2714263400449 1166.5282997468896 2 584.2716674804688 MULTI HCD FTMS 0 0 0 14634 589886.5625 0.617753783144135 2 -0.074798583984375 2 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 145.12958885780327 1.3974915176135797E-05 1 {M(Oxidation (M))|F}KAEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 9 2 + 113.24 0 0 9.7076 9.7076 95.768 0 0 0 70.3713816064726 16.478174818886373 16.478174818886373 14.56989664711034 0 3.305462187404089 0 2.4604093769761874 0 {M(Oxidation (M))|F}KAEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};[QA][Y{I|L}]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}EAKE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[EP]KYS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}EAEK;[Y{M(Oxidation (M))|F}]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}EAKE;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EAKE 9.7076;8.4586;7.7752;6.8109;6.2306;5.8439;5.8204;5.6733;4.8796;4.8796 -;+;-;-;-;-;-;-;-;- + 2006 + NaN NaN 223681.7 NaN 11508 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14637 64.188 NaN 1620400 35 0 145460 0.261 + 23435 RLPEPLPSW 9 110 547.8033185266116 1093.5920841200232 2 548.2898559570312 MULTI HCD FTMS 0 0 0 14634 35906.27734375 0.49639927190508626 7 -0.215606689453125 3 Unmodified _RLPEPLPSW_ ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF 12.240655878213236 0.2545997876781172 1 {I|L}PA{I|L}DE 6 6 19.09 0 0 1.7456 0 0 290.184686530378 162.05599390201408 452.2406804323921 0 0 0 0 0 0 0 1.0189301784845295 0 {I|L}PA{I|L}DE 1.7456 - 885 + NaN NaN 348775.1 NaN 11509 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14638 64.191 NaN 506260 35 0 77266 0.261 + 23448 RLPSETYFF 9 80 580.2925245774138 1158.5704962216275 2 580.2933959960938 MULTI HCD FTMS 0 0 0 14634 204691.875 0.26496078178830385 7 -0.215606689453125 4 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 36.12702656103203 0.08312389501731911 1 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 40.445 0 0 3.491 0 0 683.3604893922586 0 683.3604893922586 0 26.95046257204389 0 0 0 1.4247425010840047 0 0 0 + Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.491 + + 132 NaN NaN 174517.5 NaN 11510 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14639 64.194 NaN 373220 35 0 31761 0.261 -1 YPEEISSMVL 10 60 592.2814709363397 1182.5483889394793 2 592.28125 MULTI HCD FTMS 0 0 0 14634 181702.921875 1 0 0 5 Oxidation (M) _YPEEISSM(Oxidation (M))VL_ ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L;nc|ENSG00000225217|P48741|HSPA7 39.94969957227396 0.1458432724694501 1 {I|L}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 6 -1 41.308 0 0 3.4932 0 0 518.2008534162125 0 518.2008534162125 0 34.27433348393707 0 0 0 1.6861818737241734 0 0.4247425010840047 0 {I|L}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 3.4932 + + 73 NaN NaN 137983.5 NaN 11511 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14640 64.198 NaN 330010 35 0 51423 0.261 -1 MYPYIYHVL 9 62 607.7999365255617 1213.5853201179234 2 608.3026123046875 MULTI HCD FTMS 0 0 0 14634 110376.828125 0.795486723620801 -1 0.02614593505859375 6 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 28.173230860318316 0.11963627304438548 1 {I|L}Q{I|L} 3 -1 17.435 0 0 1.4367 0 0 130.087970789939 726.2439669244749 856.3319377144139 0 0 0 0 0 0 0 0 0.4247425010840047 {I|L}Q{I|L} 1.4367 - 71 + NaN NaN 136166.1 NaN 11512 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14641 64.201 NaN 219960 35 0 15255 0.261 -1 FEDGKGKCPY 10 64 600.770280864753 1199.5260087963059 2 600.7694091796875 MULTI HCD FTMS 0 0 0 14634 85959.0234375 0.32801344279879235 7 -0.215606689453125 7 Carbamidomethyl (C) _FEDGKGKC(Carbamidomethyl (C))PY_ ENSG00000168758|ENST00000305476|SEMA4C 9.38312468134398 0.42334543440173333 1 [{M(Oxidation (M))|F}T]{[ET]|[MV]}[Q{I|L}]VSE{M(Oxidation (M))|F} 10 -1 + 30.864 0 0 2.573 2.573 87.667 0 0 0 2.4595372608497 12.904849854573683 2.4595372608497 30.863650028014433 0 1.1989700043360187 0 0 0 [{M(Oxidation (M))|F}T]{[ET]|[MV]}[Q{I|L}]VSE{M(Oxidation (M))|F} 2.573 - 280 NaN NaN 116716.8 NaN 11513 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14642 64.204 NaN 478450 35 0 89228 0.261 + 19620 NVDEGIYQL 9 67 525.7585196768844 1049.5024864205686 2 525.7586059570312 MULTI HCD FTMS 0 0 0 14634 69787.75 0.6316584276578396 1 -0.039398193359375 8 Unmodified _NVDEGIYQL_ ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2 53.832793166522166 0.026208976789938845 1 [Q{I|L}][WP]CYQ{I|L} 8 6 + 41.075 0 0 3.9138 3.9138 85.407 0 0 0 3.339993556128107 8.962053328752823 3.339993556128107 9.262137858390812 0 0.8807196863200843 0 0 0.6861818737241735 [Q{I|L}][WP]CYQ{I|L};[Q{I|L}][WP]CY[AG]{I|L};[QT]SS{[QN]|[E{I|L}]|[KN]}WS{I|L};{[NV]|[RG]}CSV[C(Carbamidomethyl (C))K]Q{I|L};{[NV]|[RG]}CS{[QN]|[E{I|L}]|[KN]}{I|L}C(Carbamidomethyl (C)){I|L};{[NV]|[RG]}CSV[KQ]C(Carbamidomethyl (C)){I|L};[QT]SS{[QN]|[E{I|L}]|[KN]}{I|L}C(Carbamidomethyl (C)){I|L};{[NV]|[RG]}CSV{[RE]|[WV]}M{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y[PA][PA]C(Carbamidomethyl (C)){I|L};[Q{I|L}]Y{[QN]|[E{I|L}]|[KN]}SS[NP] 3.9138;3.0312;2.2466;2.1007;1.9854;1.8176;1.6348;0.97042;0.96741;0.89706 -;-;-;-;-;-;-;-;-;- 423 NaN NaN 162681.1 NaN 11514 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14643 64.208 NaN 265280 35 0 21879 0.261 -1 0 61 596.9665516079718 1787.8778254241154 3 597.2992553710938 MULTI HCD FTMS 0 0 0 14634 63239.80078125 0.13143532105461903 -6 0.1669769287109375 9 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.4525 0 0 1475.7339019960664 0 1475.7339019960664 0 1.1877186907143766 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4525 - 89 NaN NaN 127869.7 NaN 11515 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14644 64.211 NaN 384520 35 0 17114 0.262 + 16265 LQGRFGCEI 9 80 511.7598995748927 1021.5052462165854 2 511.7589111328125 MULTI HCD FTMS 0 0 0 14634 68234.0390625 0.5959465744298222 -2 0.05565643310546875 10 Unmodified _LQGRFGCEI_ ENSG00000160862|ENST00000292401|AZGP1 46.020951573049366 0.037705236580089195 1 [QA]V{M(Oxidation (M))|F}Q{[MG]|[TS]}E{I|L} 9 5 + 41.094 0 0 4.0229 4.0229 80.078 0 0 0 1.40462328965436 1.40462328965436 1.40462328965436 0.45757490560674796 0 1.2302046884880937 0 0.4247425010840047 1.1861818737241734 [QA]V{M(Oxidation (M))|F}Q{[MG]|[TS]}E{I|L};[QA]V{M(Oxidation (M))|F}[C(Carbamidomethyl (C))R]E{I|L};[QA]VQVDV[YT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HD[HK]E{I|L};[QA]V{M(Oxidation (M))|F}[AG]{[MG]|[TS]}E{I|L};[QA]V[AG]VDV[YT];[QA]V{M(Oxidation (M))|F}Q[WM]{I|L};[QA]VTQ{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L};[QA]VTQEYA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[{M(Oxidation (M))|F}V][HK]E{I|L} 4.0229;3.9781;3.8854;3.7656;3.1215;2.984;2.7001;2.5225;2.2003;1.967 -;-;-;-;-;-;-;-;-;- 596 NaN NaN 140855.4 NaN 11516 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14645 64.214 NaN 220160 35 0 25789 0.261 + 31492 VYFPDQHINF 10 46 640.3083149109358 1278.6020768886715 2 640.3077392578125 MULTI HCD FTMS 0 0 0 14634 38165.30078125 0.38602498199925533 -3 0.088470458984375 11 Unmodified _VYFPDQHINF_ ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B 19.361941925380144 0.3300069447713393 1 [YV]{M(Oxidation (M))|F} 3 7 37.447 0 0 2.9288 0 0 0 866.3797312678308 866.3797312678308 16.478174818886373 0 0 0 0 1 1.6989700043360187 0 0 + [YV]{M(Oxidation (M))|F} 2.9288 + + 21 NaN NaN 119390.1 NaN 11517 3126 14634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14647 64.219 NaN 6763100 35 0 388210 0.327 + 27164 SYNNFFRMF 9 132 621.2740788742191 1240.533604815238 2 621.2744140625 MULTI HCD FTMS 0 0 0 14646 5300689 0.956783034867862 -1 0.039398193359375 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 208.14542850568068 7.55743023528371E-18 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 120.45 0 0 9.7095 0 0 0 208.0361727350219 208.0361727350219 84.18678988642628 0 0 0 0 2.775318704602627 2 1.4531198197908841 1.295114016114533 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.7095 - 15079 + NaN NaN 886549.3 NaN 11518 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14648 64.224 NaN 4571900 35 0 173680 0.217 + 27165 SYNNFFRMF 9 132 621.2740788742191 1240.533604815238 2 622.2764892578125 MULTI HCD FTMS 0 0 0 14646 1518718.625 1 0 0 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 129.77232118876745 0.0006187813247758304 1 TR{M(Oxidation (M))|F}{M(Oxidation (M))|F}DNCQ 8 8 81.816 0 0 6.5953 0 0 211.05919081855626 0 211.05919081855626 0 36.043511795240605 0 0 0 1.3737125054200234 0 1.7803695511246984 0.7614393726401688 TR{M(Oxidation (M))|F}{M(Oxidation (M))|F}DNCQ 6.5953 - 13005 NaN NaN 585828.1 NaN 11519 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14649 64.226 NaN 456800 35 0 34433 0.262 + 27657 TALFVEHVL 9 76 514.7925430059001 1027.5705330786002 2 514.7926025390625 MULTI HCD FTMS 0 0 0 14646 153872.96875 0.31116501872575864 7 -0.2068939208984375 3 Unmodified _TALFVEHVL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 71.92227651296345 0.008466197542043549 1 [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L} 9 0 + 92.872 0 0 9.038 9.038 94.513 0 0 0 7.9722877531575165 7.9722877531575165 7.9722877531575165 11.989700043360187 0 2.8807196863200843 1.6989700043360187 0.3252574989159953 0 + + [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L};[TA]{M(Oxidation (M))|F}{I|L}VEHV{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[NP][PG]{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}[PG]{I|L};[TA]{M(Oxidation (M))|F}{I|L}V[NP][PG]{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[NP]{I|L}[PG];[TA]{I|L}[NP]V{M(Oxidation (M))|F}{I|L}[PG];[TA]{M(Oxidation (M))|F}{I|L}V[NP]{I|L}[PG];[TA]{I|L}[NP]V{I|L}[PG]{M(Oxidation (M))|F};[TA]E{I|L}[{M(Oxidation (M))|F}V]HV{I|L} 9.038;7.8712;6.0237;5.9269;5.8301;5.8301;5.7332;5.6364;5.3422;4.5854 +;-;-;-;-;-;-;-;-;- + 514 NaN NaN 159279.1 NaN 11520 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14650 64.23 NaN 442420 35 0 59828 0.261 + 23449 RLPSETYFF 9 74 580.2925245774138 1158.5704962216275 2 580.2929077148438 MULTI HCD FTMS 0 0 0 14646 196810.265625 0.25475853325376857 8 -0.22969818115234375 4 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 29.081581746732265 0.1154664336125038 1 SY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 44.597 0 0 3.8493 0 0 596.3097401349625 0 596.3097401349625 0 30.617515817243515 0 0 0 1.4247425010840047 0 0.3807196863200844 0 SY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8493 - 116 NaN NaN 150823.5 NaN 11521 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14651 64.233 NaN 1132500 35 0 150490 0.261 + 5804 FPAYERVLL 9 88 554.3131691724249 1106.6117854116496 2 554.3137817382812 MULTI HCD FTMS 0 0 0 14646 595540 0.740267817868436 -1 0.039398193359375 5 Unmodified _FPAYERVLL_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 59.368380827593164 0.01846506874148156 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L} 9 0 + 75.869 0 0 6.8559 6.8559 91.368 0 0 0 10.607887415777526 24.599009323677095 10.607887415777526 13.156753288559813 0 2.3807196863200843 1.6989700043360187 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L};{M(Oxidation (M))|F}PAYERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SE{M(Oxidation (M))|F}RV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SERV{M(Oxidation (M))|F}{I|L}{I|L};{M(Oxidation (M))|F}PAYER{I|L}V{I|L};[PA]{M(Oxidation (M))|F}YERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SERV{I|L}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SER{M(Oxidation (M))|F}V{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SG[KA]Q{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S[KQ]Q{M(Oxidation (M))|F}{I|L}{I|L} 6.8559;5.667;5.1704;4.919;4.8131;4.5968;4.575;4.5594;4.371;4.3248 +;+;-;-;-;-;-;-;-;- + 1322 NaN NaN 256052 NaN 11522 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14652 64.236 NaN 392300 35 0 32187 0.261 + 27078 SYMGHFDLL 9 88 549.7497688734081 1097.4849848136162 2 549.7501831054688 MULTI HCD FTMS 0 0 0 14646 172892.1875 0.016691277115138136 141 -3.7722244262695312 6 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 57.47134341890925 0.0211188941628804 1 EW{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L} 6 5 29.403 0 0 2.6791 0 0 276.0778065412125 0 276.0778065412125 0 12.949171771974761 0 0 0 0.3807196863200844 0 1.0356668758921828 0 EW{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L} 2.6791 - 224 NaN NaN 151429.8 NaN 11523 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14653 64.24 NaN 521070 35 0 30700 0.261 + 5344 FFSSSLASPSL 11 97 571.7895560751729 NaN 0 571.77099609375 PEAK HCD FTMS 0 0 0 14646 10495.06640625 0.19074951093910342 10 -0.28540802001953125 7 Unmodified _FFSSSLASPSL_ ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-2|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-5|CUX1 17.11289562659939 0.27893181706115244 1 S{M(Oxidation (M))|F}T 3 10 17.937 0 0 1.5712 0 0 586.3301975001519 217.06203638248283 803.3922338826347 0 0 0 0 0 0 0 0.7134679910804405 0 S{M(Oxidation (M))|F}T 1.5712 - 769 + NaN NaN 173346.7 NaN 11524 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14654 64.243 NaN 237990 35 0 13967 0.261 -1 IPWYQSMF 8 60 544.2489355532393 1086.4833181732786 2 544.2493286132812 MULTI HCD FTMS 0 0 0 14646 48684.8984375 0.1498050315064124 22 -0.6093978881835938 8 Oxidation (M) _IPWYQSM(Oxidation (M))F_ nc|ENSG807|P61550|ERVS71-1 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3442 0 0 921.4038484240583 0 921.4038484240583 0 7.437106056797374 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3442 + + 19 + NaN NaN 126482.2 NaN 11525 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14655 64.246 NaN 234900 35 0 11287 0.261 + -1 YLSFSKMKQ 9 76 574.2922807027032 NaN 0 574.2914428710938 PEAK HCD FTMS 0 0 0 14646 43243.77734375 0.9607910135061247 -1 0.039398193359375 9 Oxidation (M) _YLSFSKM(Oxidation (M))KQ_ REV__ENST00000496308.1_1_3:159706816-159711351:+|nuORF 10.823927491677226 0.2427956001690155 1 {M(Oxidation (M))|F}SYE 4 -1 10.522 0 0 0.91767 0 0 131.08753884505637 486.2366121881469 617.3241510332033 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}SYE 0.91767 - 201 + NaN NaN 120039.2 NaN 11526 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14656 64.25 NaN 91360 35 0 8650.2 0.263 + 28982 TYDAHHSA 8 46 451.1938354738497 NaN 0 450.72845458984375 PEAK HCD FTMS 0 0 0 14646 7020.8095703125 0.3325933999540154 7 -0.2068939208984375 10 Unmodified _TYDAHHSA_ ENSG00000140968|ENST00000268638|IRF8 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115092.8 NaN 11527 3127 14646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14658 64.255 NaN 1777200 35 0 249180 0.327 + 29081 TYGEIFEKF 9 106 567.2791460627044 1132.5437391922087 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14657 1178624.75 0.04780248061517491 44 -1.2059173583984375 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 114.18643581695662 0.002258955990713129 1 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 94.087 0 0 8.3076 8.3076 95.194 0 0 0 16.140930126415682 14.973024840566467 14.973024840566467 21.62089213865474 0 2.41944517631652 2 0.5994850021680094 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KT{I|L};[YT][TP]T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SP{I|L}[YT]K{M(Oxidation (M))|F} 8.3076;6.3985;5.6511;5.2049;5.0703;4.6626;4.5904;4.5787;4.4955;4.1225 +;-;-;-;-;-;-;-;-;- + 3924 + NaN NaN 354077.6 NaN 11528 3128 14657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14659 64.259 NaN 446780 35 0 43112 0.261 + 13312 KYMDVQFDF 9 56 604.7680082675702 1207.5214636019402 2 604.7686767578125 MULTI HCD FTMS 0 0 0 14657 224738.390625 0.08259791321533809 30 -0.820068359375 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 61.60191391372663 0.015340508911304802 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 6 58.175 0 0 4.8177 0 0 666.305253821362 0 666.305253821362 0 35.577737855223646 0 0 0 1.5 0 0 1.1237125054200234 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8177 - 552 NaN NaN 154213.9 NaN 11529 3128 14657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14660 64.263 NaN 278810 35 0 36481 0.261 + 27392 SYTHIQYLF 9 61 586.2921058371545 1170.569658741109 2 586.292724609375 MULTI HCD FTMS 0 0 0 14657 158459.65625 0.5674102730316498 4 -0.11792755126953125 3 Unmodified _SYTHIQYLF_ ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C 30.636539890814138 0.10832830463492794 1 [Y{I|L}][QT][HS]Y{I|L}{M(Oxidation (M))|F} 9 4 + 49.376 0 0 4.2181 4.2181 83.503 0 0 0 8.930534213938088 36.29924602543241 8.930534213938088 7.570071809000609 0 1.5 1.5228787452803376 0.4247425010840047 0.3807196863200844 [Y{I|L}][QT][HS]Y{I|L}{M(Oxidation (M))|F};[Y{I|L}][QT][HS]{I|L}Y{M(Oxidation (M))|F};[Y{I|L}][QT][HS]Y{M(Oxidation (M))|F}{I|L};[RP]{[MG]|[TS]}[C(Carbamidomethyl (C))K]Y{I|L}{M(Oxidation (M))|F} 4.2181;3.5714;3.0205;2.6158 -;-;-;- 108 NaN NaN 130429 NaN 11530 3128 14657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14661 64.266 NaN 337630 35 0 29628 0.261 + 4633 EYMEHVYLI 9 73 598.7862309138502 1195.5579088945003 2 598.7866821289062 MULTI HCD FTMS 0 0 0 14657 176310.53125 1 0 0 4 Unmodified _EYMEHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 36.04419817259434 0.08350412372117409 1 Y{I|L}{I|L} 3 6 30.93 0 0 2.5871 0 0 788.3168202130875 0 788.3168202130875 0 18.064250275506875 0 0 0 0.9247425010840047 0 0 0 + Y{I|L}{I|L} 2.5871 + + 177 NaN NaN 138153.7 NaN 11531 3128 14657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14662 64.269 NaN 390700 35 0 85683 0.264 + 7541 FYAERFFKF 9 52 418.88142932671656 1253.6224585803498 3 418.88165283203125 MULTI HCD FTMS 0 0 0 14657 72480.109375 0.8175508302797478 1 -0.0228424072265625 5 Unmodified _FYAERFFKF_ ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 9.5439744041441 0.27789851728676895 1 AYE 3 7 27.435 0 0 2.1885 0 0 872.4560154541551 0 872.4560154541551 0 13.455612550363796 0 0 0 0.4247425010840047 0 0 0 AYE 2.1885 - 19 NaN NaN 143373.2 NaN 11532 3128 14657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14663 64.273 NaN 216040 35 0 59285 0.261 -1 0 47 454.6623418148364 907.3101306964728 2 454.66253662109375 MULTI HCD FTMS 0 0 0 14657 83640.34375 0.4307637661191933 14 -0.39751434326171875 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.5408 0 0 742.231500180651 0 742.231500180651 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5408 - 8 + NaN NaN 111998.4 NaN 11533 3128 14657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14665 64.277 NaN 1145000 35 0 105380 0.327 + 21857 QAVQVDVEL 9 72 500.7690971040936 999.5236412749872 2 500.7692565917969 MULTI HCD FTMS 0 0 0 14664 524604.8125 0.5564314019435543 1 -0.03945159912109375 1 Unmodified _QAVQVDVEL_ ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 99.75527289724121 0.004270341300239591 1 QVDVE{I|L} 6 3 70.57 0 0 7.0604 0 0 298.163866111525 0 298.163866111525 0 36.89503113112893 0 0 0 2.1237125054200234 0 0.7302046884880937 0.9802046884880937 + QVDVE{I|L} 7.0604 + + 706 NaN NaN 258321.8 NaN 11534 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14666 64.282 NaN 1687300 35 0 574060 0.261 + 23222 RFVNVVPTF 9 69 539.8050559818482 1077.5955590304964 2 539.80615234375 MULTI HCD FTMS 0 0 0 14664 691484.125 0.7923605351850818 1 -0.03945159912109375 2 Unmodified _RFVNVVPTF_ ENSG00000149806|ENST00000529639|FAU 43.85829265575387 0.04763305254408404 1 VPT{M(Oxidation (M))|F} 4 5 47.907 0 0 4.4458 0 0 615.3476538331237 0 615.3476538331237 0 13.248715810909175 0 0 0 1.4247425010840047 0 0.7742275032520141 0 + VPT{M(Oxidation (M))|F} 4.4458 + + 166 + NaN NaN 339607.3 NaN 11535 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14667 64.285 NaN 983300 35 0 161720 0.261 + 25223 SAQIELDSL 9 76 488.2532305834015 974.491908233603 2 488.25335693359375 MULTI HCD FTMS 0 0 0 14664 611695.4375 0.6817946675947555 2 -0.06563568115234375 3 Unmodified _SAQIELDSL_ REV__ENSG00000162086|ENST00000669516|ZNF75A;REV__nc|ENSG00000162086|Q96N20|ZNF75A 103.35351024395868 0.004027461563756449 1 {[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L} 9 -1 + 78.239 0 0 8.0287 8.0287 88.637 0 0 0 12.04119982655925 16.478174818886373 12.04119982655925 4.348331157524967 0 1.3494850021680094 1.3010299956639813 1.4916440611282626 0.6694451763165201 {[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L};{[TV]|[{I|L}S]}D{[NV]|[RG]}{I|L}DS{I|L};{[TV]|[{I|L}S]}D{I|L}{[NV]|[RG]}DS{I|L};{[CA]|SS}[KP]E{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[TV]|[{I|L}S]}D{I|L}E[QA]S{I|L};{[TV]|[{I|L}S]}[PG]{[CA]|SS}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};T{[QG]|[NA]}{I|L}E{I|L}DS{I|L} 8.0287;7.5825;7.1318;6.7931;6.6558;6.2051;6.1874;5.6973;5.2607;4.701 -;-;-;-;-;-;-;-;-;- 275 NaN NaN 230573.4 NaN 11536 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14668 64.289 NaN 1276000 35 0 160800 0.261 + 34308 YPDTDVILM 9 91 541.7573246265175 1081.500096319835 2 541.7575073242188 MULTI HCD FTMS 0 0 0 14664 602765 0.7214126230154073 2 -0.06563568115234375 4 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 67.34385681178166 0.00994769994983633 1 DV{I|L}{I|L}{M(Oxidation (M))|F} 5 4 63.192 0 0 5.843 0 0 476.1914234845719 0 476.1914234845719 0 36.748854377895825 0 0 0 2 0 1.0629529932484498 0 + DV{I|L}{I|L}{M(Oxidation (M))|F} 5.843 + + 2626 NaN NaN 270254.4 NaN 11537 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14669 64.292 NaN 363740 35 0 29348 0.261 -1 PYMDSPQSIGF 11 71 629.2771150152156 1256.539677097231 2 629.7783203125 MULTI HCD FTMS 0 0 0 14664 103054.015625 0.7275250595437173 1 -0.03945159912109375 5 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 30.7034409873982 0.19682282685441074 1 S{I|L}G{M(Oxidation (M))|F} 4 -1 49.725 0 0 3.9573 0 0 834.3196729178671 0 834.3196729178671 0 32.37965367563433 0 0 0 1.3807196863200843 0 1 0 S{I|L}G{M(Oxidation (M))|F} 3.9573 + + 109 NaN NaN 145209.1 NaN 11538 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14670 64.295 NaN 333360 35 0 40273 0.262 + 25532 SFLEYRTF 8 67 531.7661074803768 1061.5176620275536 2 532.2659912109375 MULTI HCD FTMS 0 0 0 14664 110826.859375 0.3759714252092965 -17 0.4696769714355469 6 Unmodified _SFLEYRTF_ ENSG00000073060|ENST00000261693|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-4|SCARB1;nc|ENSG00000073060|Q8WTV0-5|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1 5.230669730166228 0.5342319408533849 1 PD{M(Oxidation (M))|F}DVA[R{I|L}] 8 7 38.136 0 0 3.5926 0 0 130.03846172383413 0 130.03846172383413 0 9.420080530223132 0 0 0 0 0 0 0 PD{M(Oxidation (M))|F}DVA[R{I|L}] 3.5926 - 190 + NaN NaN 151007.8 NaN 11539 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14671 64.299 NaN 211450 35 0 43848 0.261 + 35260 YVRTFFPEF 9 50 603.3024488805338 1204.5903448278675 2 603.2994995117188 MULTI HCD FTMS 0 0 0 14664 67237.921875 0.17447531233609592 -31 0.8836135864257812 7 Unmodified _YVRTFFPEF_ ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C 6.723162845929126 0.3000504726104499 1 Y{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1558 0 0 876.4447216437834 0 876.4447216437834 0 25.48455006504028 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 2.1558 - 14 NaN NaN 113372.5 NaN 11540 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14672 64.302 NaN 466910 35 0 106890 0.264 + 17431 LYRVPGGL 8 58 437.7606221097689 873.5066912863379 2 437.76068115234375 MULTI HCD FTMS 0 0 0 14664 68104.2578125 0.1313650374329578 15 -0.4236907958984375 8 Unmodified _LYRVPGGL_ REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF 23.1484247019978 0.4234759064137959 1 {I|L}YTV 4 -1 53.646 0 0 6.1415 0 0 0 394.22031580142817 394.22031580142817 30.815468932362577 0 0 0 0 0.4247425010840047 2 0.6747425010840047 0 {I|L}YTV 6.1415 - 103 + NaN NaN 167369.7 NaN 11541 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14673 64.305 NaN 123100 35 0 11425 0.261 + 29749 VDTIYFSI 8 49 479.2480758160124 NaN 0 479.24822998046875 PEAK HCD FTMS 0 0 0 14664 24413.0703125 0.4630335650743814 1 -0.03945159912109375 9 Unmodified _VDTIYFSI_ REV__ENSG00000102755|ENST00000282397|FLT1;REV__nc|ENSG00000102755|P17948-2|FLT1;REV__nc|ENSG00000102755|P17948-3|FLT1 16.942295170755138 0.3865212393897457 1 E{I|L} 2 -1 24.821 0 0 2.595 0 0 399.20994765449376 312.12128310728104 711.3312307617748 0 0 0 0 0 1.4247425010840047 0 0.5 0 E{I|L} 2.595 - 33 NaN NaN 102092 NaN 11542 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14674 64.309 NaN 120780 35 0 8102.7 0.261 + -1 PMAEELNL 8 52 466.7230588990161 931.4315648648322 2 466.7233581542969 MULTI HCD FTMS 0 0 0 14664 37007.8671875 0.6659363449019393 2 -0.06563568115234375 10 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.50814828952472 1 {I|L}N{I|L} 3 -1 30.005 0 0 3.2214 0 0 573.211256333941 0 573.211256333941 0 26.025684359364405 0 0 0 0.3807196863200844 0 0 0 {I|L}N{I|L} 3.2214 + + 44 NaN NaN 97264.6 NaN 11543 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14675 64.312 NaN 127630 35 0 12802 0.261 + 34877 YSEDFSENQF 10 61 422.5044183918974 NaN 0 422.7397155761719 PEAK HCD FTMS 0 0 0 14664 9571.6064453125 0.8596691282624858 1 -0.03945159912109375 11 Unmodified _YSEDFSENQF_ ENSG00000137766|ENST00000260323|UNC13C 3.5964929083625545 0.337106189561315 1 G 1 10 5.4846 0 0 0.6506 0 0 620.8939553367261 162.05599390201408 782.9499492387401 0 0 0 0 0 0 0 0 0 G 0.6506 - 7 + NaN NaN 111825.4 NaN 11544 3129 14664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14677 64.317 NaN 4628500 35 0 1238000 0.327 + 24690 RYLTVAAVF 9 87 520.3002137463006 1038.5858745594012 2 520.300537109375 MULTI HCD FTMS 0 0 0 14676 2485003.5 0.10597344381735167 17 -0.4727630615234375 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 60.07390631473393 0.0174780869009295 1 TVAAV{M(Oxidation (M))|F} 6 3 67.785 0 0 6.5266 0 0 432.24925429511876 0 432.24925429511876 0 60.794803486847826 0 0 0 2.1989700043360187 0 1.1549471895720984 0 + TVAAV{M(Oxidation (M))|F} 6.5266 + + 518 NaN NaN 659522.6 NaN 11545 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14678 64.321 NaN 1194700 35 0 327290 0.261 -1 TAMDVVYAL 9 79 499.7466801642808 997.4788073953616 2 499.7469787597656 MULTI HCD FTMS 0 0 0 14676 538412.9375 0.6751811825356244 2 -0.055633544921875 2 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 1 C(Carbamidomethyl (C))VYA{I|L} 5 -1 47.435 0 0 4.7555 0 0 373.1864186017594 0 373.1864186017594 0 13.203168625674095 0 0 0 1.4247425010840047 0 0 0 C(Carbamidomethyl (C))VYA{I|L} 4.7555 - 581 NaN NaN 250666.2 NaN 11546 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14679 64.325 NaN 634090 35 0 47109 0.261 + -1 YAMVALIFNE 10 86 593.7928125209186 NaN 0 593.780029296875 PEAK HCD FTMS 0 0 0 14676 12195.4580078125 0.9987790535625667 -1 0.03945159912109375 3 Oxidation (M) _YAM(Oxidation (M))VALIFNE_ REV__ENSG00000165202|ENST00000297913|OR1Q1 10.823927491677226 0.33092050725491123 1 EWRVTD 6 -1 32.484 0 0 2.74 0 0 165.10396997892184 231.07695947818596 396.1809294571078 0 0 0 0 0 0 0 0.8494850021680094 0 EWRVTD 2.74 - 499 + NaN NaN 183654.7 NaN 11547 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14680 64.328 NaN 1252300 35 0 426280 0.261 + 10804 ISTICAPDVL 10 68 516.2758713208177 1030.5371897084353 2 516.761474609375 MULTI HCD FTMS 0 0 0 14676 67840.171875 0.45143712117234275 11 -0.29909515380859375 4 Unmodified _ISTICAPDVL_ REV__ENSG00000130669|ENST00000360442|PAK4;REV__nc|ENSG00000130669|O96013-2|PAK4;REV__nc|ENSG00000130669|O96013-3|PAK4;REV__nc|ENSG00000130669|O96013-4|PAK4 19.256988751693697 0.33098864134661865 1 PEVA{I|L}H{M(Oxidation (M))|F} 7 -1 39.685 0 0 3.8509 0 0 219.11433463533598 0 219.11433463533598 0 -5.582107673544108 -5.582107673544108 0 0 0 0 0 0 PEVA{I|L}H{M(Oxidation (M))|F} 3.8509 - 490 + NaN NaN 267490.3 NaN 11548 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14681 64.331 NaN 384480 35 0 45975 0.261 + 20408 NYYKVNWTF 9 77 617.7983443911801 1233.58213584916 2 617.7984008789062 MULTI HCD FTMS 0 0 0 14676 154645.609375 0.9192983834728166 -3 0.09769439697265625 5 Unmodified _NYYKVNWTF_ ENST00000518345.1_1_8:109254078-109254135:-|nuORF 57.24910588100465 0.021429789259086996 1 [YN]YKVNWT{M(Oxidation (M))|F} 9 0 + 63.783 0 0 5.1706 5.1706 86.536 0 0 0 42.457443841136495 9.009461452434238 9.009461452434238 9.208187539523749 0 2.774227503252014 2 0 0 + + [YN]YKVNWT{M(Oxidation (M))|F};[YN]YKVGGWT{M(Oxidation (M))|F};{[WT]|[RM]}R[HS]NWT{M(Oxidation (M))|F};[YN]YRR[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[WP]AANWT{M(Oxidation (M))|F};{[WT]|[RM]}R[HS]GGWT{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}GRRY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}[WP]QQWT{M(Oxidation (M))|F};{[YC]|[HE]}{[CA]|SS}K[KP]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WT]|[RM]}R[HS]{[WS]|[C(Carbamidomethyl (C)){I|L}]}Q{M(Oxidation (M))|F} 5.1706;4.4241;3.3555;3.3333;2.8901;2.609;2.5422;2.1383;1.15;0.70219 +;-;-;-;-;-;-;-;-;- + 767 + NaN NaN 134776.1 NaN 11549 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14682 64.335 NaN 167110 35 0 27264 0.264 + -1 DNTRRPRDLC 10 49 434.88225862998394 NaN 0 434.88238525390625 PEAK HCD FTMS 0 0 0 14676 70025.2890625 0.7944572758502897 41 -1.1174392700195312 6 Carbamidomethyl (C) _DNTRRPRDLC(Carbamidomethyl (C))_ REV__ENST00000367459.7_1_1:192548511-192548616:+|nuORF 3.3196427980023873 0.3373431348853355 1 VD 2 -1 10.969 0 0 1.2641 0 0 128.36289264883663 522.2702730768186 650.6331657256553 0 0 0 0 0 0 0 0 0 VD 1.2641 - 3 + NaN NaN 109930.2 NaN 11550 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14683 64.338 NaN 74896 35 0 6412.7 0.261 + 10348 ILSCQNAQL 9 37 495.2577457859312 988.5009386386624 2 495.2583923339844 MULTI HCD FTMS 0 0 0 14676 10421.4931640625 0.08341253593780074 16 -0.44654083251953125 7 Unmodified _ILSCQNAQL_ ENSG00000104059|ENST00000261275|ENTREP2 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.4774 0 0 823.4217740652234 0 823.4217740652234 0 12.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4774 - 3 + NaN NaN 105066.8 NaN 11551 3130 14676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14685 64.343 NaN 1277300 35 0 675580 0.327 -1 0 60 427.30247491207956 852.5903968909591 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14684 723496.75 0.376898272172827 4 -0.1058197021484375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.4063 0 0 687.5116595636139 0 687.5116595636139 0 6.928031367991563 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4063 - 5 + NaN NaN 290716 NaN 11552 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14686 64.347 NaN 411420 35 0 46071 0.261 + 11851 KFAEEFYSF 9 63 584.2714263400449 1166.5282997468896 2 584.2718505859375 MULTI HCD FTMS 0 0 0 14684 170853.671875 0.17892508301517368 7 -0.1876983642578125 2 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 76.82478488871298 0.006879825292024087 1 EE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 6 3 81.023 0 0 6.9457 0 0 346.2007373463021 0 346.2007373463021 0 65.05083573054164 0 0 0 2.9247425010840047 0 1.0629529932484498 0 + EE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 6.9457 + + 404 + NaN NaN 142504.7 NaN 11553 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14687 64.351 NaN 1394500 35 0 212290 0.261 -1 0 74 596.9665516079718 1787.8778254241154 3 597.301025390625 MULTI HCD FTMS 0 0 0 14684 354560.84375 0.7369064695961985 -1 0.02618408203125 3 NaN NaN 1 Y{I|L}E{[NV]|[RG]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 41.375 0 0 2.3142 0 0 694.3627630235279 0 694.3627630235279 0 16.938200260161125 0 0 0 1.3494850021680094 0 0.8494850021680094 0 Y{I|L}E{[NV]|[RG]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3142 - 106 + NaN NaN 300584.3 NaN 11554 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14688 64.354 NaN 306080 35 0 20504 0.262 -1 0 63 526.2815928167875 1050.5486327003748 2 526.2816772460938 MULTI HCD FTMS 0 0 0 14684 74607.328125 0.019944201318540432 40 -1.0912551879882812 4 NaN NaN 1 VWS{I|L} 4 -1 44.438 0 0 4.23 0 0 547.2758045880875 0 547.2758045880875 0 30.94335023848103 0 0 0 0.9247425010840047 0 0.3252574989159953 0 VWS{I|L} 4.23 - 139 NaN NaN 124724.1 NaN 11555 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14689 64.358 NaN 196500 35 0 41319 0.261 + 18710 MYPYIYHVL 9 55 607.7986996579364 1213.5828463826726 2 607.7992553710938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 45.7499826716795 0.03894913563566938 1 YHV{I|L} 4 5 36.23 0 0 2.9854 0 0 683.2995472638687 0 683.2995472638687 0 33.13100339696028 0 0 0 0.8807196863200843 0 0 0 + YHV{I|L} 2.9854 + + 57 NaN NaN 119183.7 NaN 11556 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14690 64.361 NaN 148440 35 0 15457 0.261 + -1 ACAILGMMYPD 11 52 637.2689931795196 1272.5234334258391 2 637.2691040039062 MULTI HCD FTMS 0 0 0 14684 49946.34375 0.5688581802573183 4 -0.1058197021484375 6 Carbamidomethyl (C),2 Oxidation (M) _AC(Carbamidomethyl (C))AILGM(Oxidation (M))M(Oxidation (M))YPD_ REV__SEPHS2|p.R152L|1|0.35|ENSG00000179918|chr16:30445273-30445273|C/A|missense_variant 3.2813086475875832 0.40452996145431686 1 VY[R{M(Oxidation (M))|F}]H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7 -1 15.986 0 0 1.2562 0 0 292.03663030259537 0 292.03663030259537 0 6.5220444404238975 0 0 0 0 0 0 0 VY[R{M(Oxidation (M))|F}]H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.2562 - 23 + NaN NaN 100828.9 NaN 11557 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14691 64.364 NaN 126730 35 0 17242 0.261 + -1 CNPCPVPGFFI 11 47 625.7882590829227 1249.5619652326452 2 625.7875366210938 MULTI HCD FTMS 0 0 0 14684 11455.3671875 0.09197226719576122 6 -0.161529541015625 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))NPCPVPGFFI_ REV__ENSG00000187545|ENST00000235347|PRAMEF10 3.2813086475875832 0.40452996145431686 1 [YN]E 3 -1 24.181 0 0 1.9352 0 0 0 840.3722258223871 840.3722258223871 7.191512336730028 0 0 0 0 0 1.5228787452803376 0 0 [YN]E 1.9352 - 15 + NaN NaN 98190.5 NaN 11558 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14692 64.368 NaN 246180 35 0 25786 0.262 -1 SPGSPVILQM 10 66 522.7726854046417 1043.5308178760833 2 522.7738647460938 MULTI HCD FTMS 0 0 0 14684 20192.306640625 0.15269184998028593 18 -0.4855194091796875 8 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 17.11289562659939 0.35104376501799556 1 {I|L}Q{M(Oxidation (M))|F} 3 -1 37.747 0 0 3.6173 0 0 637.3434315412125 0 637.3434315412125 0 20.757659435244733 0 0 0 1.1549471895720984 0 0 0 {I|L}Q{M(Oxidation (M))|F} 3.6173 + + 88 NaN NaN 124834.7 NaN 11559 3131 14684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14694 64.372 NaN 3724600 35 0 216650 0.327 + 27166 SYNNFFRMF 9 116 621.2740788742191 1240.533604815238 2 621.274169921875 MULTI HCD FTMS 0 0 0 14693 2563682.25 0.462748839554984 4 -0.095916748046875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 179.17365725063826 1.1335045685127237E-12 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 115.39 0 0 9.302 0 0 0 208.03631006412346 208.03631006412346 75.02402636603848 0 0 0 0 2.7000612056866315 2 1.4773473230428984 0.7614393726401688 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.302 - 11139 + NaN NaN 558504.6 NaN 11560 3132 14693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14695 64.377 NaN 1273500 35 0 158070 0.261 + 5805 FPAYERVLL 9 95 554.3131691724249 1106.6117854116496 2 554.3134765625 MULTI HCD FTMS 0 0 0 14693 668139.8125 0.8305107986539964 4 -0.095916748046875 2 Unmodified _FPAYERVLL_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 59.368380827593164 0.01846506874148156 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L} 9 0 + 74.504 0 0 6.7326 6.7326 87.995 0 0 0 9.26863094705837 36.14848121939807 9.26863094705837 8.010299956639813 0 2.3807196863200843 1.6989700043360187 0 0.2614393726401688 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F}ERV{I|L}{I|L};{M(Oxidation (M))|F}PAYERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SG[KQ]A{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[RE]|[WV]}V{M(Oxidation (M))|F}{I|L}{I|L};[PA]{M(Oxidation (M))|F}YERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SG[KQ]A{I|L}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[RE]|[WV]}V{I|L}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[RE]|[WV]}{M(Oxidation (M))|F}V{I|L}{I|L};[PA]Y{M(Oxidation (M))|F}ERV{I|L}{I|L} 6.7326;6.0087;5.3011;4.7726;4.6134;4.2014;4.1923;4.0331;3.9818;3.4776 +;-;+;-;-;-;-;-;-;- + 554 NaN NaN 281877.1 NaN 11561 3132 14693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14696 64.381 NaN 1503000 35 0 79374 0.261 -1 NMCLKTSQL 9 122 547.7702486468327 1093.5259443604652 2 547.7596435546875 MULTI HCD FTMS 0 0 0 14693 40611.1953125 0.0586474906317146 42 -1.1403045654296875 3 Carbamidomethyl (C) _NMC(Carbamidomethyl (C))LKTSQL_ CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF 13.042465956692817 0.2476723265019929 1 NTA[DP]CE{I|L} 8 -1 45.042 0 0 4.119 0 0 232.14232070136876 0 232.14232070136876 0 2.5134875797167666 0 0 0 0.4247425010840047 0 0.3807196863200844 1.1861818737241734 NTA[DP]CE{I|L} 4.119 - 3473 NaN NaN 311984.2 NaN 11562 3132 14693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14697 64.384 NaN 541410 35 0 48623 0.261 + 21564 PYMAKFVVF 9 90 559.2909168091152 1116.5672806850303 2 559.29150390625 MULTI HCD FTMS 0 0 0 14693 183088.6875 0.46081243817419476 -5 0.15332794189453125 4 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 81.61307344734483 0.005330412723537057 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 2 + 92.189 0 0 8.2565 8.2565 87.846 0 0 0 24.366130211356065 59.0018312907727 24.366130211356065 1.7609125905568135 0 2.274227503252014 1.6989700043360187 0.2614393726401688 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KV{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V][EC]KV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]K{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F} 8.2565;8.0988;7.595;7.2695;7.1118;6.608;4.3851;4.2274;3.8025;3.7236 -;+;-;-;-;-;-;-;-;- + 901 NaN NaN 173205.2 NaN 11563 3132 14693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14698 64.387 NaN 205760 35 0 34884 0.261 -1 MYPYIYHVL 9 53 607.7986996579364 1213.5828463826726 2 608.30224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 36.466142684027034 0.08156716203802528 1 Y{[QN]|[E{I|L}]|[KN]}[Y{M(Oxidation (M))|F}]{I|L} 6 -1 20.973 0 0 1.7282 0 0 367.2207203595719 0 367.2207203595719 0 10.17097795568553 0 0 0 0.805462187404089 0 0 0.3252574989159953 Y{[QN]|[E{I|L}]|[KN]}[Y{M(Oxidation (M))|F}]{I|L} 1.7282 - 19 NaN NaN 128954 NaN 11564 3132 14693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14699 64.39 NaN 159770 35 0 33756 0.263 + 3399 EEYAMTVV 8 54 471.2177273062202 940.4209016792404 2 471.21844482421875 MULTI HCD FTMS 0 0 0 14693 56244.37109375 0.26627157995774436 -7 0.2188720703125 6 Unmodified _EEYAMTVV_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 9.347437153973935 0.5250182646323369 1 VV 2 -1 25.217 0 0 2.6814 0 0 724.274549277929 0 724.274549277929 0 22.11758134947864 0 0 0 0.4247425010840047 0 0 0 VV 2.6814 + + 9 NaN NaN 101897.4 NaN 11565 3132 14693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14701 64.395 NaN 1453700 35 0 190140 0.327 + 29082 TYGEIFEKF 9 103 567.2791460627044 1132.5437391922087 2 567.279296875 MULTI HCD FTMS 0 0 0 14700 883197.4375 0.035820585292703135 49 -1.3265762329101562 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 110.5527297667825 0.0028521687250969148 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 74.349 0 0 6.5648 6.5648 90.117 0 0 0 10.663485447708268 10.663485447708268 10.663485447708268 10.663485447708268 0 2.2034021960761265 1.6989700043360187 1.326348700266608 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};[YT]G{I|L}{M(Oxidation (M))|F}EEK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YT]G{I|L}{M(Oxidation (M))|F}E[YQ]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F} 6.5648;5.6232;5.2951;5.2296;5.1587;4.7123;4.6267;4.1518;3.989;3.889 -;-;-;-;-;-;-;-;-;- 3770 NaN NaN 309494.6 NaN 11566 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14702 64.4 NaN 546850 35 0 38605 0.261 -1 0 68 604.7680411660131 1207.521529398826 2 604.7687377929688 MULTI HCD FTMS 0 0 0 14700 215900.703125 0.06774642308523235 -27 0.7608833312988281 2 NaN NaN 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 50.433 0 0 4.1766 0 0 666.3051574538475 0 666.3051574538475 0 37.08822047627011 0 0 0 1.4247425010840047 0 0 0.4247425010840047 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1766 - 459 NaN NaN 180932.6 NaN 11567 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14703 64.403 NaN 343970 35 0 54807 0.261 -1 YNAPTDHGLCI 11 60 630.7878617904959 1259.5611706477916 2 630.7879028320312 MULTI HCD FTMS 0 0 0 14700 156511.296875 0.503037896569495 -4 0.1179656982421875 3 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 15.248480904072842 0.3242218977034194 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 75.623 0 0 6.0039 0 0 0 265.1300142877563 265.1300142877563 54.65350013324773 0 0 0 0 2.274227503252014 2 0 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.0039 - 183 + NaN NaN 130542.3 NaN 11568 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14704 64.408 NaN 217200 35 0 34119 0.261 + 23450 RLPSETYFF 9 52 580.2925245774138 1158.5704962216275 2 580.2923583984375 MULTI HCD FTMS 0 0 0 14700 82282.8515625 0.10650998569323261 14 -0.39424896240234375 4 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 22.736283301280096 0.1639198954644489 1 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 33.5 0 0 2.8915 0 0 683.3627186505875 0 683.3627186505875 0 33.499934467764874 0 0 0 0.8807196863200843 0 0 0 + Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8915 + + 11 NaN NaN 111644.5 NaN 11569 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14705 64.411 NaN 282000 35 0 18588 0.261 + 1281 AYMPHTFFI 9 84 571.7703588933117 1141.5261648534233 2 571.770751953125 MULTI HCD FTMS 0 0 0 14700 54615.3828125 0.061277954838048695 28 -0.7577743530273438 5 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 50.855029805455786 0.030374663808198754 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RYY{M(Oxidation (M))|F}{I|L} 8 4 + 53.51 0 0 4.6876 4.6876 86.481 0 0 0 8.187339429602346 39.864692631441784 8.187339429602346 9.262137858390815 0 1.4247425010840047 2 0.28872548999643577 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RYY{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[VG]YY{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[Y{I|L}]{[YC]|[HE]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R{NN|[MP]|[D{I|L}]|[EV]}AAC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[ES]|[DT]|[{I|L}C]}YY{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}R{NN|[MP]|[D{I|L}]|[EV]}[MN]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[Y{I|L}]{[{M(Oxidation (M))|F}C]|[YS]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[VG][{I|L}T]WW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[Y{I|L}][MT]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[ES]|[DT]|[{I|L}C]}[{I|L}T]WW 4.6876;3.8762;3.4783;3.3854;3.2839;3.2512;2.5895;1.718;1.3201;1.1258 -;-;-;-;-;-;-;-;-;- 467 NaN NaN 136443.7 NaN 11570 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14706 64.415 NaN 203280 35 0 15319 0.261 + 30334 VLDNLMDKSH 10 66 586.2921058371545 1170.569658741109 2 586.2932739257812 MULTI HCD FTMS 0 0 0 14700 55249.28125 0.19783590663232245 9 -0.25670623779296875 6 Unmodified _VLDNLMDKSH_ ENSG00000173166|ENST00000319170|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1 8.155526934196011 0.43213520406898465 1 Y{I|L}{M(Oxidation (M))|F} 3 8 29.693 0 0 2.5366 0 0 729.3448022907214 0 729.3448022907214 0 21.10924374808178 0 0 0 0.3494850021680094 0 0 0 Y{I|L}{M(Oxidation (M))|F} 2.5366 - 23 NaN NaN 119407.2 NaN 11571 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14707 64.418 NaN 391500 35 0 49492 0.261 + -1 MEYMTQLR 8 63 544.2502392273714 NaN 0 544.2689819335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _MEYM(Oxidation (M))TQLR_ REV__ENSG00000102743|ENST00000338625|SLC25A15;REV__ENSG00000120329|ENST00000239451|SLC25A2 18.13498045792455 0.38579626240450227 1 EY{I|L} 3 -1 17.619 0 0 1.6217 0 0 131.05872546777476 547.2166842096311 678.2754096774058 0 0 0 0 0 0 0 0.3807196863200844 0 EY{I|L} 1.6217 - 68 + NaN NaN 145736.6 NaN 11572 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14708 64.421 NaN 122250 35 0 14631 0.261 + -1 CNPCPVPGFFI 11 48 625.7882590829227 1249.5619652326452 2 625.787109375 MULTI HCD FTMS 0 0 0 14700 64417.578125 0.5171925622673388 8 -0.2205810546875 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))NPCPVPGFFI_ REV__ENSG00000187545|ENST00000235347|PRAMEF10 3.2813086475875832 0.40452996145431686 1 S 1 -1 15.485 0 0 1.2392 0 0 387.09090917971395 772.4165879973411 1159.507497177055 0 0 0 0 0 0.8494850021680094 0 0 0 S 1.2392 - 5 + NaN NaN 101123.7 NaN 11573 3133 14700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14710 64.426 NaN 675100 35 0 60915 0.327 + 21858 QAVQVDVEL 9 56 500.7690971040936 999.5236412749872 2 500.7692565917969 MULTI HCD FTMS 0 0 0 14709 298388.84375 0.316491421153573 6 -0.16376495361328125 1 Unmodified _QAVQVDVEL_ ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 89.40071534611396 0.0045416704840156395 1 QVDVE{I|L} 6 3 70.779 0 0 7.0812 0 0 298.16340834785314 0 298.16340834785314 0 46.25402610551825 0 0 0 2.1549471895720984 0 0.6989700043360187 1.0010912013506126 + QVDVE{I|L} 7.0812 + + 329 NaN NaN 188796.5 NaN 11574 3134 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14711 64.43 NaN 300920 35 0 50248 0.261 + 25224 SAQIELDSL 9 51 488.2532305834015 974.491908233603 2 488.2533874511719 MULTI HCD FTMS 0 0 0 14709 173782 0.19369711405433165 7 -0.1898956298828125 2 Unmodified _SAQIELDSL_ REV__ENSG00000162086|ENST00000669516|ZNF75A;REV__nc|ENSG00000162086|Q96N20|ZNF75A 51.629811660486645 0.02929079705179888 1 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L} 9 -1 + 62.413 0 0 6.4047 6.4047 85.737 0 0 0 11.254471812167779 35.94720941673181 11.254471812167779 4.247425010840047 0 1.4247425010840047 0 1.2302046884880937 0 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}S{NN|[MP]|[D{I|L}]|[EV]}{I|L} 6.4047;5.9688;4.711;2.8378 -;-;-;- 87 NaN NaN 118726.6 NaN 11575 3134 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14712 64.434 NaN 137320 35 0 15696 0.261 + 21990 QEVFRFAYY 9 47 611.7985816821217 NaN 0 611.7991943359375 PEAK HCD FTMS 0 0 0 14709 33743.3203125 0.7170775695323156 2 -0.04235076904296875 3 Unmodified _QEVFRFAYY_ ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-2|APH1A 26.88365393820708 0.14119366324382274 1 Y 1 8 13.099 0 0 1.0723 0 0 877.445019954284 178.05074487857658 1055.4957648328607 0 0 0 0 0 0.8494850021680094 0 0 0 + Y 1.0723 + + 12 + NaN NaN 105871.8 NaN 11576 3134 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14713 64.437 NaN 209470 35 0 26409 0.262 + 425 ALAAPQQEAL 10 53 506.27630123631496 1010.53804953943 2 506.2765808105469 MULTI HCD FTMS 0 0 0 14709 59246.57421875 0.6479875976341958 -4 0.10919952392578125 4 Unmodified _ALAAPQQEAL_ ENSG00000113140|ENST00000231061|SPARC;ENST00000521327.1_1_5:151052612-151066451:-|nuORF 8.155526934196011 0.43213520406898465 1 A{I|L} 2 8 25.969 0 0 2.5698 0 0 808.4078730790305 0 808.4078730790305 0 18.979400086720375 0 0 0 0.5 0 0 0 + A{I|L} 2.5698 + + 20 NaN NaN 113516.7 NaN 11577 3134 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14714 64.441 NaN 154940 35 0 24769 0.261 + 34469 YPFELEKDL 9 50 577.2921319841216 NaN 0 577.2922973632812 PEAK HCD FTMS 0 0 0 14709 9401.4482421875 0.24836996201858258 1 -0.02280426025390625 5 Unmodified _YPFELEKDL_ ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF 20.41453444215458 0.1846157837989407 1 {I|L}M 2 8 8.5835 0 0 0.74473 0 0 130.1056129899244 775.3335665338499 905.4391795237743 0 0 0 0 0 0 0 0 0 {I|L}M 0.74473 - 8 + NaN NaN 108378.2 NaN 11578 3134 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14715 64.444 NaN 205880 35 0 12127 0.261 + -1 DYSRRYKC 8 71 574.2688723278808 1146.5231917225615 2 574.2709350585938 MULTI HCD FTMS 0 0 0 14709 19611.462890625 0.0370245382838396 47 -1.2631072998046875 6 Carbamidomethyl (C) _DYSRRYKC(Carbamidomethyl (C))_ REV__ENSG00000163071|ENST00000295213|SPATA18;REV__nc|ENSG00000163071|Q8TC71-2|SPATA18 4.3292370932331545 0.5355693454741696 1 NS 2 -1 12.206 0 0 1.0646 0 0 164.06263371650522 778.3792208307249 942.4418545472302 0 0 0 0 0 0.4247425010840047 0 0 0 NS 1.0646 - 150 + NaN NaN 118413.4 NaN 11579 3134 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14717 64.449 NaN 3176100 35 0 791190 0.327 + 24691 RYLTVAAVF 9 76 520.3002137463006 1038.5858745594012 2 520.3004760742188 MULTI HCD FTMS 0 0 0 14716 1721474.25 0.07341259467658401 22 -0.5995407104492188 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 60.07390631473393 0.0174780869009295 1 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 66.112 0 0 6.3656 6.3656 89.717 0 0 0 10.612431371158735 57.69585969540586 10.612431371158735 10.66946789630613 0 2.2302046884880937 0 1.1237125054200234 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[VP][HV]TVAAV{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}HVAAV{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]V{M(Oxidation (M))|F};[Y{I|L}]RTV[Q{I|L}]{M(Oxidation (M))|F};[VP][HV]T[Q{I|L}]V{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}H[Q{I|L}]V{M(Oxidation (M))|F};[VP][HV]TV[Q{I|L}]{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}HV[Q{I|L}]{M(Oxidation (M))|F};[Q{I|L}]VTR[Y{I|L}]{M(Oxidation (M))|F} 6.3656;5.3383;5.1983;3.1143;2.9693;2.0818;1.9418;1.9368;1.7969;1.3711 -;-;-;-;-;-;-;-;-;- 319 NaN NaN 564160.6 NaN 11580 3135 14716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14718 64.453 NaN 837840 35 0 102310 0.262 + 34309 YPDTDVILM 9 81 541.7573246265175 1081.500096319835 2 541.7575073242188 MULTI HCD FTMS 0 0 0 14716 263249.59375 0.31506736445368905 8 -0.22933197021484375 2 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 53.57557251787612 0.02656881086235134 1 EV{I|L}{I|L}{M(Oxidation (M))|F} 5 5 60.063 0 0 5.5537 0 0 462.1858082501969 0 462.1858082501969 0 37.879011768134134 0 0 0 2 0 1.0114393726401687 0 EV{I|L}{I|L}{M(Oxidation (M))|F} 5.5537 - 574 NaN NaN 212813.3 NaN 11581 3135 14716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14719 64.457 NaN 273900 35 0 21425 0.261 + 4769 EYTVRFTF 8 59 531.7661074803768 1061.5176620275536 2 532.266357421875 MULTI HCD FTMS 0 0 0 14716 84902.0390625 0.28802350630089296 -11 0.3247528076171875 3 Unmodified _EYTVRFTF_ ABCF1|p.P617L|1|0.18|ENSG00000204574|chr6:30586270-30586270|C/T|missense_variant;ENSG00000204574|ENST00000326195|ABCF1;nc|ENSG00000204574|Q8NE71-2|ABCF1 7.910154910731844 0.5302565402355366 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 5 24.935 0 0 2.349 0 0 648.3200434746224 0 648.3200434746224 0 2.271212547196626 0 0 0 0.3252574989159953 0 0 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.349 + + 154 + NaN NaN 117865.7 NaN 11582 3135 14716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14720 64.46 NaN 306870 35 0 29640 0.261 + 27079 SYMGHFDLL 9 81 549.7497688734081 1097.4849848136162 2 549.7496337890625 MULTI HCD FTMS 0 0 0 14716 133142.765625 0.012853806924750508 149 -3.97601318359375 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 61.357469665136826 0.01568246967499496 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 38.689 0 0 3.5252 3.5252 87.727 0 0 0 2.9658005691457205 20.323935290026935 2.9658005691457205 23.845760471140565 0 1.4247425010840047 0 0.7742275032520141 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}YR{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]};{[TV]|[{I|L}S]}YYR{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]} 3.5252;1.3525;0.46213 +;-;- + 415 NaN NaN 133849.8 NaN 11583 3135 14716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14721 64.464 NaN 334710 35 0 72681 0.262 + 11663 IYVPRGAV 8 54 437.7606221097689 873.5066912863379 2 437.7606506347656 MULTI HCD FTMS 0 0 0 14716 34420.6328125 0.06639331905398493 21 -0.5700225830078125 5 Unmodified _IYVPRGAV_ REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF 18.13498045792455 0.4603629008820478 1 {I|L}Y 2 -1 35.969 0 0 4.1178 0 0 0 594.3369757982148 594.3369757982148 8.846886630380695 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}Y 4.1178 + + 27 + NaN NaN 131199.4 NaN 11584 3135 14716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14723 64.468 NaN 857900 35 0 284220 0.327 + 8687 HFTMARGVL 9 50 516.2758713208177 1030.5371897084353 2 516.7613525390625 MULTI HCD FTMS 0 0 0 14722 37492.16015625 0.24948864927193867 17 -0.4618682861328125 1 Unmodified _HFTMARGVL_ REV__ENSG00000130702|ENST00000252999|LAMA5;REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF 14.838274106304384 0.23215694253501695 1 PEVA{I|L}H{M(Oxidation (M))|F} 7 -1 39.685 0 0 3.8509 0 0 219.1145727609399 0 219.1145727609399 0 6.320232147054057 0 0 0 0 0 0 0 PEVA{I|L}H{M(Oxidation (M))|F} 3.8509 - 514 + NaN NaN 209028.5 NaN 11585 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14724 64.473 NaN 806210 35 0 252550 0.261 + 33955 YLSMKIVKP 9 73 539.8180149091737 NaN 0 539.80615234375 PEAK HCD FTMS 0 0 0 14722 11492.400390625 0.3885184107699217 4 -0.1214141845703125 2 Unmodified _YLSMKIVKP_ ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF 19.256988751693697 0.19238547928067054 1 VPT 3 8 17.167 0 0 1.593 0 0 615.3734645717344 162.0561464899047 777.4296110616391 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 VPT 1.593 - 52 + NaN NaN 212986.7 NaN 11586 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14725 64.476 NaN 519310 35 0 149770 0.261 -1 TAMDVVYAL 9 63 499.7466801642808 997.4788073953616 2 499.746826171875 MULTI HCD FTMS 0 0 0 14722 323539.4375 0.40572528034425387 8 -0.23268890380859375 3 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 44.40701690623563 0.04511410083598184 1 {[TV]|[{I|L}S]}[{M(Oxidation (M))|F}E]GVYA{I|L} 9 -1 + 52.144 0 0 5.2276 5.2276 91.522 0 0 0 4.937646547500947 48.16447164506137 4.937646547500947 52.14387173178174 0 1.8494850021680094 0 1.1307196863200843 0 {[TV]|[{I|L}S]}[{M(Oxidation (M))|F}E]GVYA{I|L} 5.2276 - 85 NaN NaN 164495.7 NaN 11587 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14726 64.48 NaN 513810 35 0 45857 0.261 + 7221 FSRVFVTMEA 10 73 593.7986901241773 1185.5828273151544 2 593.7804565429688 MULTI HCD FTMS 0 0 0 14722 20037.84765625 0.10431555411958761 -4 0.095916748046875 4 Unmodified _FSRVFVTMEA_ REV__ENSG00000051620|ENST00000607197|HEBP2;REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2 13.90604991867851 0.3810395177745597 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWY{I|L} 9 -1 + 63.81 0 0 5.3822 5.3822 83.861 0 0 0 19.77216123634374 6.210149894766701 6.210149894766701 3.935078169319297 0 0 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRYW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]YW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG][{M(Oxidation (M))|F}V]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}V]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]{M(Oxidation (M))|F}R{[DA]|[EG]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]{M(Oxidation (M))|F}[VG]WY{I|L};[{M(Oxidation (M))|F}E]{[CA]|SS}VRWY{I|L} 5.3822;5.0503;4.9266;4.6055;4.2736;4.1536;3.7711;3.45;3.45;3.4037 -;-;-;-;-;-;-;-;-;- 737 NaN NaN 166747.9 NaN 11588 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14727 64.483 NaN 214720 35 0 43846 0.263 -1 ACGNDDCR 8 43 455.65988115964655 909.3052093860931 2 455.66033935546875 MULTI HCD FTMS 0 0 0 14722 61321.85546875 0.6358740001479267 -3 0.07303619384765625 5 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.5392561982033289 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.4405 0 0 744.22676197574 0 744.22676197574 0 13.098943791441968 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4405 - 4 + NaN NaN 110750.5 NaN 11589 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14728 64.486 NaN 173020 35 0 11852 0.261 -1 SFHRNCSI 8 71 510.7377768930467 1019.4610008528934 2 510.73797607421875 MULTI HCD FTMS 0 0 0 14722 37938.25390625 0.42824144153646027 8 -0.23268890380859375 6 Carbamidomethyl (C) _SFHRNC(Carbamidomethyl (C))SI_ ENST00000368468.3_1_6:119500260-119500521:-|nuORF 10.823927491677226 0.514154816617796 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]YA 7 -1 26.247 0 0 2.5746 0 0 0 128.06430417381628 128.06430417381628 14.793191455385397 0 0 0 0 0.3807196863200844 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]YA 2.5746 - 57 NaN NaN 129266.3 NaN 11590 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14729 64.49 NaN 873000 35 0 62403 0.261 + 25132 SAHLYGTYIF 10 106 586.2921058371545 1170.569658741109 2 586.8084106445312 MULTI HCD FTMS 0 0 0 14722 44132.25390625 0.2355964853847837 11 -0.3212127685546875 7 Unmodified _SAHLYGTYIF_ REV__ENSG00000112365|ENST00000230122|ZBTB24;REV__nc|ENSG00000112365|O43167-2|ZBTB24;REV__ZBTB24|p.L509Ffs*5|1|0.2|ENSG00000112365|chr6:109466418-109466419|-/A|frameshift_variant 19.256988751693697 0.33098864134661865 1 [YV]SRT{M(Oxidation (M))|F}TW 8 -1 49.066 0 0 4.1916 0 0 0 127.03756597578457 127.03756597578457 16.512933156714467 0 0 0 0 0 2 0.9247425010840047 0 [YV]SRT{M(Oxidation (M))|F}TW 4.1916 - 4402 NaN NaN 214790.1 NaN 11591 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14730 64.493 NaN 234810 35 0 14632 0.261 -1 YDETHCHW 8 70 574.2156901411607 1146.4168273491214 2 574.216552734375 MULTI HCD FTMS 0 0 0 14722 47724.578125 0.8031807754520709 -4 0.095916748046875 8 Carbamidomethyl (C) _YDETHC(Carbamidomethyl (C))HW_ ENST00000453064.1_1_7:76744718-76745129:-|nuORF 5.760428011301431 0.5334459684533844 1 SW 2 -1 13.188 0 0 1.1503 0 0 855.2947565052847 0 855.2947565052847 0 6.197887582883936 0 0 0 0 0 0 0 SW 1.1503 - 195 + NaN NaN 109536.6 NaN 11592 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14731 64.496 NaN 94444 35 0 8532.4 0.262 + 3234 EDMTPLNL 8 42 466.7230588990161 931.4315648648322 2 467.2333984375 MULTI HCD FTMS 0 0 0 14722 22816.734375 0.6493320513628607 5 -0.14754486083984375 9 Unmodified _EDMTPLNL_ ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ 7.289230182591677 0.5311777711368266 1 {I|L}N{I|L} 3 5 26.198 0 0 2.8126 0 0 573.2144032209 0 573.2144032209 0 20.713337517843655 0 0 0 0 0 0 0 + {I|L}N{I|L} 2.8126 + + 6 NaN NaN 101146.4 NaN 11593 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14732 64.5 NaN 180100 35 0 19011 0.261 -1 0 52 416.76325992357556 NaN 0 416.7548828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.5537 0 0 565.3699682602992 116.05066858463124 681.4206368449304 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.5537 - 6 + NaN NaN 106714.1 NaN 11594 3136 14722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14734 64.505 NaN 605050 35 0 315230 0.327 -1 0 51 427.30247491207956 852.5903968909591 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14733 365200.0625 0.19024725757739538 10 -0.2850494384765625 1 NaN NaN 1 {I|L} 1 -1 3.9794 0 0 0.46674 0 0 486.32745818880585 250.1636904352172 736.491148624023 0 0 0 0 0 0 0 0 0 {I|L} 0.46674 - 7 + NaN NaN 173932.2 NaN 11595 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14735 64.509 NaN 1202200 35 0 142520 0.261 + 18529 MTEGQKRVDE 10 69 596.7850653235491 1191.5555777138982 2 597.3007202148438 MULTI HCD FTMS 0 0 0 14733 69683.4375 0.6928893445583808 -2 0.0557098388671875 2 Unmodified _MTEGQKRVDE_ REV__ENSG00000066032|ENST00000402739|CTNNA2;REV__nc|ENSG00000066032|P26232-2|CTNNA2;REV__nc|ENSG00000066032|P26232-3|CTNNA2;REV__nc|ENSG00000066032|P26232-5|CTNNA2 12.240655878213236 0.39661705172222156 1 [YV]{I|L}EYYVP{M(Oxidation (M))|F} 9 -1 + 35.529 0 0 2.9818 2.9818 80.237 0 0 0 4.25514336734161 10.748031033778751 4.25514336734161 2.593176876429517 0 0 2 0 0 [YV]{I|L}EYYVP{M(Oxidation (M))|F};[YV]{I|L}[RH]{[{M(Oxidation (M))|F}D]|MM}NE;[YV]{I|L}G[HV]{[{M(Oxidation (M))|F}D]|MM}NE;[YV]{I|L}G[HV]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DE;[YV]{I|L}[RH]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}P{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[HQ]E{I|L}NE;{M(Oxidation (M))|F}DVYYE{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[Y{M(Oxidation (M))|F}]{I|L}[HQ]E{I|L}GGE;{M(Oxidation (M))|F}[{I|L}T]YYE{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{M(Oxidation (M))|F}DV{NN|[MP]|[D{I|L}]|[EV]}HQA[{M(Oxidation (M))|F}T] 2.9818;2.7641;2.7257;2.0727;1.9441;1.837;1.4703;1.0642;0.80234;0.73772 -;-;-;-;-;-;-;-;-;- 220 NaN NaN 265409.8 NaN 11596 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14736 64.513 NaN 654180 35 0 105590 0.261 -1 0 97 585.2478275282557 1168.4811021233113 2 585.2481689453125 MULTI HCD FTMS 0 0 0 14733 328805.53125 0.8778458531082968 -2 0.0557098388671875 3 NaN NaN 1 {I|L}V{I|L}DE 5 -1 62.211 0 0 5.3241 0 0 0 596.1514376275999 596.1514376275999 24.16386562212267 0 0 0 0 1.2302046884880937 1.6989700043360187 0.2742275032520141 0 {I|L}V{I|L}DE 5.3241 - 498 + NaN NaN 182059.9 NaN 11597 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14737 64.516 NaN 580180 35 0 145230 0.261 + 24419 RYLADLPTL 9 59 531.303009816087 1060.5914666989738 2 531.3031616210938 MULTI HCD FTMS 0 0 0 14733 244174.015625 0.6302494922396145 -2 0.0557098388671875 4 Unmodified _RYLADLPTL_ ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 36.506200033944 0.08138327636155518 1 D{I|L}PT{I|L} 5 4 49.196 0 0 4.6385 0 0 503.2866383283219 0 503.2866383283219 0 22.028937514676485 0 0 0 1 0 0.4247425010840047 0 + D{I|L}PT{I|L} 4.6385 + + 124 NaN NaN 179034.8 NaN 11598 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14738 64.519 NaN 178080 35 0 12696 0.261 + -1 FEWDQMVIL 9 64 598.7862309138502 1195.5579088945003 2 599.2879638671875 MULTI HCD FTMS 0 0 0 14733 59549.35546875 0.3163959978860215 6 -0.17362213134765625 5 Oxidation (M) _FEWDQM(Oxidation (M))VIL_ REV__ENSG00000139173|ENST00000266534|TMEM117 19.256988751693697 0.19398022840297344 1 {I|L}{I|L} 2 -1 23.583 0 0 1.9726 0 0 951.3806867351169 0 951.3806867351169 0 11.989700043360187 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.9726 + + 37 NaN NaN 114985.3 NaN 11599 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14739 64.523 NaN 183840 35 0 16804 0.261 + 20409 NYYKVNWTF 9 55 617.7983443911801 1233.58213584916 2 617.7985229492188 MULTI HCD FTMS 0 0 0 14733 41838.8125 0.24871286584286365 4 -0.11138153076171875 6 Unmodified _NYYKVNWTF_ ENST00000518345.1_1_8:109254078-109254135:-|nuORF 20.41453444215458 0.18397929046831515 1 [YN]Y[YQ]K{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 6 + 46.602 0 0 3.7777 3.7777 89.198 0 0 0 7.336740400816026 21.38498702870301 7.336740400816026 46.60151216962362 0 1 2 0 0 [YN]Y[YQ]K{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 3.7777 - 74 NaN NaN 109870.7 NaN 11600 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14740 64.526 NaN 282000 35 0 63266 0.261 + 18711 MYPYIYHVL 9 54 607.7986996579364 1213.5828463826726 2 607.7989501953125 MULTI HCD FTMS 0 0 0 14733 90622.40625 0.4796434327905213 -6 0.161529541015625 7 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 67.41302359171755 0.009925318700911543 1 YHV{I|L} 4 5 35.918 0 0 2.9596 0 0 683.3000193021047 0 683.3000193021047 0 18.48258770979733 0 0 0 1 0 0 0 + YHV{I|L} 2.9596 + + 58 NaN NaN 131613.8 NaN 11601 3137 14733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14742 64.531 NaN 2266200 35 0 94766 0.327 + 27167 SYNNFFRMF 9 132 621.2740788742191 1240.533604815238 2 621.2743530273438 MULTI HCD FTMS 0 0 0 14741 1080723.75 0.19507240462113068 10 -0.2750244140625 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 128.93241758739586 0.0006697181619526092 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 98.37 0 0 7.9296 7.9296 91.323 0 0 0 68.66291748826197 0.7404377078198223 0.7404377078198223 9.208187539523749 0 2.6791746928241125 2 0 0.5994850021680094 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];[WQ][PG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.9296;7.1874;7.1874;6.7347;6.4486;5.9924;5.9924;4.9827;4.7484;4.6043 +;-;-;+;-;-;-;-;-;- + 13598 + NaN NaN 427677 NaN 11602 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14743 64.535 NaN 1320000 35 0 153320 0.261 + 29083 TYGEIFEKF 9 110 567.2791460627044 1132.5437391922087 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14741 814741.625 0.033044165019815344 54 -1.4721221923828125 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 110.5527297667825 0.0028521687250969148 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 70.816 0 0 6.2528 6.2528 89.57 0 0 0 13.673692088882824 10.815468932362577 10.815468932362577 10.815468932362577 0 2.254432191740108 1.6989700043360187 1.0189301784845295 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}[{I|L}T]K;[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]{M(Oxidation (M))|F}K;{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F} 6.2528;5.2978;5.0455;4.8467;4.3889;4.2847;4.1704;4.0398;4.0376;3.8917 -;-;-;-;-;-;-;-;-;- 2490 NaN NaN 285260.4 NaN 11603 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14744 64.539 NaN 1119300 35 0 59064 0.261 + 34940 YSLVDQELQ 9 121 547.7706586066832 1093.5267642801664 2 547.760009765625 MULTI HCD FTMS 0 0 0 14741 47686.5703125 0.808370211639129 -15 0.43944549560546875 3 Unmodified _YSLVDQELQ_ REV__ENSG00000136861|ENST00000349780|CDK5RAP2;REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF;REV__nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;REV__nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2 22.736283301280096 0.1639198954644489 1 EC[DP]ATN[{I|L}T] 9 -1 38.161 0 0 3.4897 0 0 131.1190149484258 0 131.1190149484258 0 0.3712060008230722 0 0 0 0.4247425010840047 0 0.9040461585048922 0.7302046884880937 EC[DP]ATN[{I|L}T] 3.4897 - 5844 + NaN NaN 260742.4 NaN 11604 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14745 64.542 NaN 848890 35 0 84274 0.261 + 21565 PYMAKFVVF 9 102 559.2909168091152 1116.5672806850303 2 559.2911987304688 MULTI HCD FTMS 0 0 0 14741 309540.40625 0.7790763660233965 1 -0.03282928466796875 4 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 81.61307344734483 0.005330412723537057 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}VV{M(Oxidation (M))|F} 9 0 + 92.986 0 0 8.3279 8.3279 87.109 0 0 0 24.850680276396346 59.79872819733373 24.850680276396346 0.044321917401077826 0 2.305462187404089 1.6989700043360187 0.6109243748081782 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KV{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V][EC]K{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]KV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}VV{M(Oxidation (M))|F} 8.3279;8.3239;8.0583;6.9805;6.9765;6.7109;4.3697;4.3657;4.1001;3.7591 +;-;-;-;-;-;-;-;-;- + 1218 NaN NaN 214024.4 NaN 11605 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14746 64.545 NaN 598120 35 0 69863 0.261 + 5806 FPAYERVLL 9 72 554.3131691724249 1106.6117854116496 2 554.3134155273438 MULTI HCD FTMS 0 0 0 14741 217744.0625 0.2706601101532783 10 -0.2750244140625 5 Unmodified _FPAYERVLL_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 59.368380827593164 0.01846506874148156 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L} 9 0 + 65.908 0 0 5.9558 5.9558 85.659 0 0 0 8.50833760139686 8.50833760139686 8.50833760139686 5.848396689760094 0 2.305462187404089 1.6989700043360187 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYER{I|L}V{I|L};{M(Oxidation (M))|F}PAYERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SGV{[NV]|[RG]}K{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[TA]{[NV]|[RG]}K{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SGV{[NV]|[RG]}K{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[TA]{[NV]|[RG]}K{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]ERV{I|L}{I|L} 5.9558;5.4273;5.187;3.19;3.1231;2.7588;2.6919;2.4967 +;-;+;-;-;-;-;- + 340 NaN NaN 187750.6 NaN 11606 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14747 64.549 NaN 199910 35 0 59261 0.261 + 3400 EEYAMTVV 8 45 471.2177273062202 940.4209016792404 2 471.2176208496094 MULTI HCD FTMS 0 0 0 14741 146581.25 0.6939435941887218 -1 0.0261688232421875 6 Unmodified _EEYAMTVV_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 9.347437153973935 0.5250182646323369 1 VV 2 -1 25.969 0 0 2.7614 0 0 724.2739579387394 0 724.2739579387394 0 21.53212513775344 0 0 0 0.5 0 0 0 VV 2.7614 + + 22 NaN NaN 121089.6 NaN 11607 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14748 64.552 NaN 523980 35 0 68905 0.261 + 16734 LYANMFERL 9 77 578.7944732162439 1155.5743934992877 2 578.7951049804688 MULTI HCD FTMS 0 0 0 14741 167564.21875 0.5538081823131882 -1 0.0261688232421875 7 Unmodified _LYANMFERL_ ENSG00000004478|ENST00000001008|FKBP4 103.82355648334675 0.003950725192926219 1 {I|L}YANM{M(Oxidation (M))|F}ER{I|L} 9 0 + 103.18 0 0 8.9293 8.9293 92.865 0 0 0 90.46774379777631 9.009461452434238 9.009461452434238 9.208187539523749 0 2.555462187404089 2 0.7742275032520141 0.3054621874040891 + + {I|L}YANM{M(Oxidation (M))|F}ER{I|L};{I|L}YAGGM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]ANM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGGM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{[CA]|SS}A{M(Oxidation (M))|F}ER{I|L};{I|L}Y[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}[TP]S{I|L};[Y{I|L}][C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}E[VG]{I|L};{I|L}YA{[WT]|[RM]}[{M(Oxidation (M))|F}E]N{I|L};[Y{I|L}]A[MD]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}ER{I|L} 8.9293;8.1324;7.5953;5.772;5.2708;4.7592;4.694;3.9361;3.9334;2.3893 +;-;+;-;-;-;-;-;-;- + 685 + NaN NaN 160805.5 NaN 11608 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14749 64.555 NaN 241240 35 0 17057 0.261 + 11203 IYKEIWSI 8 61 526.2941853912077 1050.5738178492154 2 526.2819213867188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _IYKEIWSI_ REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1 19.438996006549623 0.45076845602799126 1 [Y{I|L}]Q{[QN]|[E{I|L}]|[KN]}SVS{I|L} 9 -1 + 55.824 0 0 5.3137 5.3137 84.349 0 0 0 20.775006193212278 29.388065022124827 20.775006193212278 5.255762612236907 0 0 1.6989700043360187 0.4247425010840047 0.3494850021680094 [Y{I|L}]Q{[QN]|[E{I|L}]|[KN]}SVS{I|L};[Y{I|L}][RD]VSVS{I|L};[Y{I|L}]QV{[ET]|[MV]}VS{I|L};[Y{I|L}][AG]{[QN]|[E{I|L}]|[KN]}SVS{I|L};[Q{I|L}]Y{[QN]|[E{I|L}]|[KN]}SVS{I|L};[Y{I|L}][AG]V{[ET]|[MV]}VS{I|L};[Q{I|L}]YV{[ET]|[MV]}VS{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}VV[{M(Oxidation (M))|F}T]S{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}V[{M(Oxidation (M))|F}T]VS{I|L} 5.3137;4.8134;4.4541;4.1046;3.3177;3.2449;2.4581;1.8262;1.8262 -;-;-;-;-;-;-;-;- 258 NaN NaN 130917.4 NaN 11609 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14750 64.559 NaN 185450 35 0 17942 0.261 + -1 LFCETIMFTL 10 56 637.811639013488 1273.608725093776 2 637.8118286132812 MULTI HCD FTMS 0 0 0 14741 127058.3046875 1 0 0 9 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))ETIMFTL_ REV__ENSG00000279961|ENST00000623286|OR8U3 18.1463463914782 0.3413772152514074 1 {M(Oxidation (M))|F}T{I|L} 3 -1 38.188 0 0 2.9984 0 0 894.3950068758655 0 894.3950068758655 0 31.197887582883936 0 0 0 1 0 0.5 0 {M(Oxidation (M))|F}T{I|L} 2.9984 + + 90 NaN NaN 110328.1 NaN 11610 3138 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14752 64.564 NaN 3850400 35 0 178230 0.327 + 29397 TYQRWQFTL 9 128 621.8168531276966 1241.6191533221931 2 621.8169555664062 MULTI HCD FTMS 0 0 0 14751 1471181.25 1 0 0 1 Unmodified _TYQRWQFTL_ ENSG00000174231|ENST00000304992|PRPF8 114.4966697963812 0.002208309420877245 1 [YT]QRWQ{M(Oxidation (M))|F}T{I|L} 9 0 + 80.491 0 0 6.4827 6.4827 88.805 0 0 0 18.60038831858624 26.505894568245253 18.60038831858624 9.208187539523749 0 2.341129063296272 1.3979400086720375 0.4247425010840047 0.5242275032520141 + + [YT]QRWQ{M(Oxidation (M))|F}T{I|L};[YT]QRW[AG]{M(Oxidation (M))|F}T{I|L};[YT][AG]RWQ{M(Oxidation (M))|F}T{I|L};[YT]QRWQ{M(Oxidation (M))|F}{I|L}T;[YT][AG]RW[AG]{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T][SG]RWQ{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T]R[SG]WQ{M(Oxidation (M))|F}T{I|L};[YG][TA]RWQ{M(Oxidation (M))|F}T{I|L};[YT][VS]SRRC(Carbamidomethyl (C))T{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AARWQ{M(Oxidation (M))|F}T{I|L} 6.4827;5.7411;5.7411;5.1708;5.003;4.9733;4.9091;4.7307;4.6187;4.4514 +;-;-;-;-;-;-;-;-;- + 14860 NaN NaN 626059.9 NaN 11611 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14753 64.568 NaN 796960 35 0 132600 0.261 + 32148 VYSNSIYEL 9 75 544.2690641769922 1086.5235754207843 2 544.2692260742188 MULTI HCD FTMS 0 0 0 14751 663551.25 1 0 0 2 Unmodified _VYSNSIYEL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 133.0521902211835 0.0004198702180815479 1 [YV]SNS{I|L}YE{I|L} 9 0 + 102.86 0 0 9.4672 9.4672 96.611 0 0 0 16.355830254716253 78.68230658345396 16.355830254716253 21.510234424404686 0 1.9604093769761874 1.2218487496163564 1.4916440611282624 1.2302046884880937 + + [YV]SNS{I|L}YE{I|L};[YV]SGGS{I|L}YE{I|L};[YV]SK{[DA]|[EG]}YE{I|L};[YT][QA]S{I|L}YE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YG]S{I|L}YE{I|L};[YT]{[QS]|[NT]}A{I|L}YE{I|L};[YV][YT]T[QA]E{I|L};[YV]SKM{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};[YT][YV]T[QA]E{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}H]|[RQ]}[NP]SM{I|L} 9.4672;7.4875;7.2577;6.1287;5.8516;5.2877;4.0489;3.6471;2.5135;2.45 +;-;-;-;-;-;-;-;-;- + 721 NaN NaN 203395.8 NaN 11612 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14754 64.572 NaN 1372700 35 0 419280 0.261 + 30877 VQPSLFYHL 9 93 552.2977490159989 1102.5809450987977 2 552.2978515625 MULTI HCD FTMS 0 0 0 14751 640582.25 0.8337672059344758 -3 0.09516143798828125 3 Unmodified _VQPSLFYHL_ ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6 45.69961567697781 0.039180348357221985 1 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 8 7 48.434 0 0 4.3927 0 0 165.16099395730413 0 165.16099395730413 0 14.293715317411682 0 0 0 0 0 1.329689690656103 0.23965182871044374 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 4.3927 - 906 + NaN NaN 288790.8 NaN 11613 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14755 64.575 NaN 428170 35 0 71275 0.261 -1 YNAPTDHGLCI 11 64 630.7878617904959 1259.5611706477916 2 630.787841796875 MULTI HCD FTMS 0 0 0 14751 234443.84375 0.7535183745736715 2 -0.0523834228515625 4 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 26.268140514670165 0.22820724222159966 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 81.93 0 0 6.5046 0 0 0 265.1304110162719 265.1304110162719 62.46584697476848 0 0 0 0 2.579689690656103 2 0.3252574989159953 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.5046 - 249 + NaN NaN 151674 NaN 11614 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14756 64.578 NaN 506750 35 0 41495 0.261 -1 0 66 604.7680411660131 1207.521529398826 2 604.7680053710938 MULTI HCD FTMS 0 0 0 14751 332662.28125 0.10438446620997338 -21 0.6030502319335938 5 NaN NaN 1 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 60.521 0 0 5.012 0 0 262.0953541486344 0 262.0953541486344 0 40.38441689032581 0 0 0 1.3494850021680094 0 0 0.805462187404089 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.012 - 566 NaN NaN 172883.1 NaN 11615 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14757 64.582 NaN 218000 35 0 9206.4 0.261 + 6277 FPFHFVDRL 9 77 589.310982627855 1176.6074123225098 2 589.8321533203125 MULTI HCD FTMS 0 0 0 14751 57514.89453125 1 0 0 6 Unmodified _FPFHFVDRL_ ENSG00000135972|ENST00000258455|MRPS9;ENST00000472220.1_1_2:105708813-105716216:+|nuORF;SIK3-MRPS9|1|fusion 29.84058131909904 0.11198220037953927 1 ED{M(Oxidation (M))|F}H{M(Oxidation (M))|F}Q 6 6 38.18 0 0 3.2449 0 0 0 370.20954309635005 370.20954309635005 12.262357117701086 0 0 0 0 0.2742275032520141 0 0.4247425010840047 0 ED{M(Oxidation (M))|F}H{M(Oxidation (M))|F}Q 3.2449 - 690 + NaN NaN 118363.1 NaN 11616 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14758 64.585 NaN 310370 35 0 45451 0.264 + 32621 WLPGTPGF 8 52 437.7261498215497 873.4377467098994 2 437.7261047363281 MULTI HCD FTMS 0 0 0 14751 101481.25 1 0 0 7 Unmodified _WLPGTPGF_ ENST00000390654.7_2_5:177686746-178016941:-|nuORF 5.230669730166228 0.5342319408533849 1 E{M(Oxidation (M))|F} 2 7 32.474 0 0 3.718 0 0 579.3166357253276 0 579.3166357253276 0 16.276362525516532 0 0 0 1 0 0.5 0 E{M(Oxidation (M))|F} 3.718 - 27 + NaN NaN 122478.4 NaN 11617 3139 14751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14760 64.59 NaN 2540000 35 0 556490 0.327 + 24692 RYLTVAAVF 9 80 520.3002137463006 1038.5858745594012 2 520.3005981445312 MULTI HCD FTMS 0 0 0 14759 1231490 0.052517123749173965 27 -0.7431106567382812 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 47.748688679222035 0.03472022231463587 1 [Y{I|L}]R{[TV]|[{I|L}S]}AAV{M(Oxidation (M))|F} 9 2 + 51.243 0 0 4.9339 4.9339 88.555 0 0 0 2.754829638464699 44.25280175098662 2.754829638464699 15.836134377877329 0 1.9436726795685342 0 0.8494850021680094 0 [Y{I|L}]R{[TV]|[{I|L}S]}AAV{M(Oxidation (M))|F};[Y{I|L}]R{[TV]|[{I|L}S]}AG{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}[HV]PAV{M(Oxidation (M))|F};[Y{I|L}]R{[TV]|[{I|L}S]}Q{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}[HV]PG{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}{M(Oxidation (M))|F} 4.9339;3.4091;3.3468;2.4488;1.822;0.50659 -;-;-;-;-;- 290 NaN NaN 470982.4 NaN 11618 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14761 64.594 NaN 660060 35 0 48075 0.261 + 21498 PYFTATPRSF 10 91 593.7986901241773 1185.5828273151544 2 595.2894287109375 MULTI HCD FTMS 0 0 0 14759 26342.578125 0.6661708359679895 -1 0.02625274658203125 2 Unmodified _PYFTATPRSF_ ENSG00000168930|ENST00000329758|TRIM49;ENSG00000182053|ENST00000332682|TRIM49B;ENSG00000204449|ENST00000448984|TRIM49C 16.149105407346934 0.3600587335443843 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}[SG] 10 8 + 44.346 0 0 3.7405 3.7405 59.812 0 0 0 13.222192947339195 0.7918124604762511 0.7918124604762511 0 0 0 1.6989700043360187 0.2742275032520141 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV[SG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKN[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KP{M(Oxidation (M))|F}[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VV{[WT]|[RM]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VRDV{M(Oxidation (M))|F}[SG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VRD{M(Oxidation (M))|F}V[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V[SG] 3.7405;3.7405;3.0503;3.0234;2.897;2.8765;2.7532;2.6252;2.6252;2.585 -;-;-;-;-;-;-;-;-;- 2707 NaN NaN 196372.2 NaN 11619 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14762 64.598 NaN 934480 35 0 95911 0.261 + 32346 VYVGHEVFEN 10 72 596.7850653235491 1191.5555777138982 2 597.3008422851562 MULTI HCD FTMS 0 0 0 14759 56421.9765625 0.5610255142633994 1 -0.02613067626953125 3 Unmodified _VYVGHEVFEN_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 11.640296217721598 0.4022326134240651 1 [YV]V 3 7 25.062 0 0 2.1033 0 0 0 827.3307601692294 827.3307601692294 4.259687322722812 0 0 0 0 0 2 0 0 + [YV]V 2.1033 + + 128 NaN NaN 219747.2 NaN 11620 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14763 64.601 NaN 632870 35 0 81577 0.261 + 1282 AYMPHTFFI 9 84 571.7703588933117 1141.5261648534233 2 571.7701416015625 MULTI HCD FTMS 0 0 0 14759 101906.609375 0.11433827404301726 35 -0.9458847045898438 4 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 44.40701690623563 0.04511410083598184 1 MYS 3 8 33.94 0 0 2.9732 0 0 0 757.3685117676602 757.3685117676602 6.649837551702326 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 MYS 2.9732 - 354 + NaN NaN 182738.3 NaN 11621 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14764 64.604 NaN 123320 35 0 15051 0.261 + 762 ASGLEALDSL 10 44 488.2532305834015 974.491908233603 2 488.2533264160156 MULTI HCD FTMS 0 0 0 14759 90846.3203125 0.10125715014780966 13 -0.3404541015625 5 Unmodified _ASGLEALDSL_ LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant 34.40172386719151 0.19398797222092762 1 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L} 9 4 + 47.993 0 0 4.925 4.925 82.677 0 0 0 4.19347469197298 37.81620601977153 4.19347469197298 3.0546218740408904 0 1.1861818737241734 0 0.4247425010840047 0 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}S{NN|[MP]|[D{I|L}]|[EV]}{I|L} 4.925;4.6115;1.4805 -;-;- 57 NaN NaN 93969.2 NaN 11622 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14765 64.608 NaN 134920 35 0 12028 0.261 + 1092 AYIKGGWIL 9 57 510.797319571607 1019.580086210014 2 510.79779052734375 MULTI HCD FTMS 0 0 0 14759 68640.1640625 1 0 0 6 Unmodified _AYIKGGWIL_ ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-2|TTC39C 28.486842064014134 0.11819662193267319 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{[WN]|[YH]}{I|L}{I|L} 8 2 + 39.587 0 0 3.8827 3.8827 89.076 0 0 0 14.370762361577292 1.7956061064919027 1.7956061064919027 39.5872875024979 0 1.8494850021680094 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{[WN]|[YH]}{I|L}{I|L} 3.8827 - 29 + NaN NaN 99812.1 NaN 11623 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14766 64.611 NaN 104490 35 0 13182 0.261 + -1 PMAEELNL 8 40 466.7230588990161 931.4315648648322 2 467.2335510253906 MULTI HCD FTMS 0 0 0 14759 19324.31640625 0.549942765999146 9 -0.238739013671875 7 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 4.3292370932331545 0.5355693454741696 1 {I|L}N{I|L} 3 -1 16.031 0 0 1.7211 0 0 573.2108021466812 0 573.2108021466812 0 5.061668675368626 0 0 0 0 0 0 0 {I|L}N{I|L} 1.7211 + + 15 NaN NaN 101296.4 NaN 11624 3140 14759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14768 64.616 NaN 1795200 35 0 301730 0.327 + 20136 NYISGIQTI 9 90 504.771584415814 1007.528615898428 2 504.7718811035156 MULTI HCD FTMS 0 0 0 14767 839805.5 0.4599449540191555 -3 0.08521270751953125 1 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 147.24064527209634 1.1743253965278724E-05 1 [YN]{I|L}SG{I|L}QT{I|L} 9 0 + 99.795 0 0 9.9049 9.9049 93.731 0 0 0 26.980523937757752 50.58688557878098 26.980523937757752 9.208187539523749 0 2.3243923658886185 1.5228787452803376 0.7059771852360797 1.2658715643802767 + + [YN]{I|L}SG{I|L}QT{I|L};[YN]{I|L}SG{I|L}[AG]T{I|L};[YN]{I|L}[NG][{I|L}T]T{I|L};[{I|L}T]Q{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]E[KQ]{I|L}YN;[{I|L}T]Q{[VA]|[{I|L}G]}S[YN]{I|L};[QT]{I|L}{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]E[KQ][YN]{I|L};[{I|L}T][AG]{[VA]|[{I|L}G]}S{I|L}YN;[QT]{I|L}{[VA]|[{I|L}G]}S[YN]{I|L} 9.9049;8.991;4.8753;3.5947;3.2246;2.661;2.5952;2.2909;2.1054;1.6614 +;-;-;-;-;-;-;-;-;- + 749 NaN NaN 351714.4 NaN 11625 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14769 64.62 NaN 481050 35 0 31553 0.261 + 31796 VYMDWYEKF 9 89 648.7837956152945 1295.5530382973889 2 648.7841186523438 MULTI HCD FTMS 0 0 0 14767 128352.265625 0.05485342912819524 43 -1.1649017333984375 2 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 87.25819977447905 0.004597812622239197 1 VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 107 0 0 8.2594 8.2594 93.134 0 0 0 10.950528104279016 10.950528104279016 10.950528104279016 10.950528104279016 0 2.9291746928241125 2 0.3494850021680094 0.2614393726401688 + + VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}DWY[VG]T{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYTGV{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}NSY[QT]K{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYT[MT]A;VY{M(Oxidation (M))|F}NSY[KQ]T{M(Oxidation (M))|F};V{[HG]|PP}EC{[QG]|[NA]}YEK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[W{I|L}]DDK{M(Oxidation (M))|F} 8.2594;7.4142;6.4184;6.0614;5.3954;5.3841;4.9824;4.2539;3.9059;3.3844 +;+;-;-;-;-;-;-;-;- + 761 + NaN NaN 159252.3 NaN 11626 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14770 64.624 NaN 874910 35 0 123570 0.261 + 35759 YYLTHGLYL 9 96 571.7975286058188 1141.5805042784375 2 571.7981567382812 MULTI HCD FTMS 0 0 0 14767 276083.28125 0.42639686345342526 -4 0.11138153076171875 3 Unmodified _YYLTHGLYL_ ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU 85.35673624503755 0.00464763827098139 1 YY{I|L}T{I|L}{[HG]|PP}Y{I|L} 9 2 + 67.986 0 0 5.9555 5.9555 84.276 0 0 0 2.8578940267558295 2.8578940267558295 2.8578940267558295 2.8578940267558295 0 1.6861818737241734 1.6989700043360187 0.7302046884880937 0 YY{I|L}T{I|L}{[HG]|PP}Y{I|L};YY{I|L}THG{I|L}Y{I|L};YY{I|L}THG{I|L}{I|L}Y;YY{I|L}THGY{I|L}{I|L};YY{I|L}TH[YV]A{I|L};{I|L}YYT{I|L}{[HG]|PP}Y{I|L} 5.9555;5.7051;4.8442;4.5157;3.3312;3.3292 -;+;-;-;-;- + 489 + NaN NaN 216466.1 NaN 11627 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14771 64.627 NaN 357580 35 0 28043 0.261 + 27080 SYMGHFDLL 9 67 549.7497688734081 1097.4849848136162 2 549.7500610351562 MULTI HCD FTMS 0 0 0 14767 109921.953125 0.01061203404952349 155 -4.1429290771484375 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 64.23631603340823 0.01165516075559909 1 D{I|L}{I|L} 3 6 30.177 0 0 2.7497 0 0 738.2769642560562 0 738.2769642560562 0 12.941905711336755 0 0 0 0.3494850021680094 0 0.6989700043360187 0 + D{I|L}{I|L} 2.7497 + + 216 NaN NaN 131065.9 NaN 11628 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14772 64.631 NaN 473800 35 0 60047 0.261 -1 YPDTDVILM 9 76 541.7573246265175 1081.500096319835 2 541.757568359375 MULTI HCD FTMS 0 0 0 14767 76454.2109375 0.09150337669406007 14 -0.3701629638671875 5 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 23.1484247019978 0.1603590852062899 1 T[PG]EA[NG]{I|L}{I|L}{M(Oxidation (M))|F} 10 -1 46.872 0 0 4.334 0 0 63.989630199758786 0 63.989630199758786 0 21.18562527100117 0 0 0 1.5 0 0.4247425010840047 0 T[PG]EA[NG]{I|L}{I|L}{M(Oxidation (M))|F} 4.334 - 574 + NaN NaN 153283.7 NaN 11629 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14773 64.634 NaN 235040 35 0 16907 0.261 + 23451 RLPSETYFF 9 62 580.2925245774138 1158.5704962216275 2 580.29345703125 MULTI HCD FTMS 0 0 0 14767 41365.34375 0.05354484059976454 22 -0.5927886962890625 6 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 6.2057823575117 0.30397260197431997 1 C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 28.812 0 0 2.4869 0 0 743.4208241193375 0 743.4208241193375 0 3.750612633917001 0 0 0 0.5 0 0 0 C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4869 - 41 NaN NaN 120376.7 NaN 11630 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14774 64.637 NaN 157900 35 0 12740 0.261 + -1 YGSSTEPMME 10 61 574.2156901411607 1146.4168273491214 2 574.216064453125 MULTI HCD FTMS 0 0 0 14767 20647.4375 0.3474860441702054 1 -0.03612518310546875 7 Oxidation (M) _YGSSTEPM(Oxidation (M))ME_ REV__ENSG00000196406|ENST00000370515|SPANXD;REV__ENSG00000198573|ENST00000358993|SPANXC 3.5964929083625545 0.45626689593999237 1 SW 2 -1 20.969 0 0 1.8291 0 0 855.2942582102738 0 855.2942582102738 0 5.919693766594705 0 0 0 0 0 0 0 SW 1.8291 - 94 + NaN NaN 102636.1 NaN 11631 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14775 64.641 NaN 116250 35 0 6333 0.261 -1 TLVQAMPVTVC 11 57 617.8122546737819 1233.6099564143638 2 618.3139038085938 MULTI HCD FTMS 0 0 0 14767 53770.26953125 0.5814770115913622 4 -0.12461090087890625 8 Carbamidomethyl (C),Oxidation (M) _TLVQAM(Oxidation (M))PVTVC(Carbamidomethyl (C))_ ENSG00000163395|ENST00000335211|IGFN1;ENST00000473483.1_1_1:201186566-201195005:+|nuORF;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1 2.9952420565917617 0.40578455234410343 1 MKM[KP] 5 -1 10.713 0 0 0.86845 0 0 600.2626209943375 0 600.2626209943375 0 5.228787452803374 0 0 0 0 0 0 0 MKM[KP] 0.86845 - 46 NaN NaN 95728.4 NaN 11632 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14776 64.644 NaN 81450 35 0 5332.2 0.264 + -1 YTWHKCFLN 9 46 423.53377849707954 NaN 0 423.5323181152344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _YTWHKC(Carbamidomethyl (C))FLN_ REV__ENSG00000152223|ENST00000282041|EPG5;REV__ENST00000585906.5_1_18:43437816-43497657:-|nuORF;REV__ENST00000590884.5_1_18:43447592-43462392:-|nuORF;REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 2.498486711656943 0.28313952434011336 1 N 1 -1 3.9794 0 0 0.47091 0 0 568.0375144142779 159.95083032779533 727.9883447420732 0 0 0 0 0 0 0 0 0 N 0.47091 + + 4 + NaN NaN 88571.6 NaN 11633 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14777 64.647 NaN 92429 35 0 10626 0.261 + 20354 NYSQYFLRIF 10 52 450.90059255890793 NaN 0 450.90069580078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _NYSQYFLRIF_ L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|24|3|anti-sense 8.444304893310646 0.3329571343918231 1 V 1 10 5.4846 0 0 0.60954 0 0 366.4528441980909 431.24045740299067 797.6933016010815 0 0 0 0 0 0 0 0 0 V 0.60954 - 1 + NaN NaN 94075.9 NaN 11634 3141 14767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14779 64.652 NaN 2413700 35 0 207860 0.327 + 32173 VYSRTFTWL 9 113 586.8083791463571 1171.602205359514 2 586.8087768554688 MULTI HCD FTMS 0 0 0 14778 1500216.875 1 0 0 1 Unmodified _VYSRTFTWL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 136.39213081522345 0.00021731600835925866 1 VYSRT{M(Oxidation (M))|F}TW{I|L} 9 0 + 110.3 0 0 9.4144 9.4144 88.85 0 0 0 3.6764917942299746 3.6764917942299746 3.6764917942299746 0.8470463913834578 0 3.048455006504028 2 1.520021379835142 0 + + VYSRT{M(Oxidation (M))|F}TW{I|L};VYRST{M(Oxidation (M))|F}TW{I|L};VYR{M(Oxidation (M))|F}TSTW{I|L};[YV]SRT{M(Oxidation (M))|F}TW{I|L};[YV]SRT{M(Oxidation (M))|F}T{I|L}W;[YV][R{M(Oxidation (M))|F}]TSTW{I|L};[YV]SRTWT{M(Oxidation (M))|F}{I|L};[YV][R{M(Oxidation (M))|F}]TST{I|L}W;[{M(Oxidation (M))|F}T]TRT{M(Oxidation (M))|F}TW{I|L};[YV]SRWSYV{I|L} 9.4144;9.3421;9.2098;9.1006;8.0096;7.7631;6.678;6.6721;6.6661;6.5475 +;-;-;+;-;-;-;-;-;- + 31312 + NaN NaN 449697.6 NaN 11635 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14780 64.656 NaN 235260 35 0 14146 0.261 + 2759 DYALLMESTTI 11 74 628.806761068228 1255.5989692032558 2 628.8076171875 MULTI HCD FTMS 0 0 0 14778 135708.171875 0.8021218265532625 1 -0.02611541748046875 2 Unmodified _DYALLMESTTI_ ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000163873|Q13003-2|GRIK3 11.494710602746466 0.35692862141139436 1 Q{M(Oxidation (M))|F}T{I|L} 4 8 44.379 0 0 3.5345 0 0 748.3300648419937 0 748.3300648419937 0 27.07190913370092 0 0 0 1.1203715150305282 0 0.4247425010840047 0 Q{M(Oxidation (M))|F}T{I|L} 3.5345 - 257 NaN NaN 120193 NaN 11636 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14781 64.66 NaN 545640 35 0 45162 0.261 + 32795 WSIFAYTWL 9 97 593.7986901241773 1185.5828273151544 2 593.7979125976562 MULTI HCD FTMS 0 0 0 14778 184764.5625 0.9618706584406527 2 -0.04901885986328125 3 Unmodified _WSIFAYTWL_ ENSG00000183023|ENST00000332839|SLC8A1;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1 10.823927491677226 0.26684000660059787 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[WT]|[RM]}YW{I|L} 9 4 + 33.368 0 0 2.8144 2.8144 79.08 0 0 0 5.57582781025922 10.524035732998364 5.57582781025922 0.3953548257807 0 0.8807196863200843 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[WT]|[RM]}YW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ESVRYW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A][WY]TW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][RD]TW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[WT]|[RM]}YGE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A][WY]TGE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]QPY{M(Oxidation (M))|F}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[WT]|[RM]}WY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ESVRWY{I|L};[{M(Oxidation (M))|F}E]SSVRYW{I|L} 2.8144;2.7811;2.6466;2.6084;2.6037;2.4359;2.2778;2.2394;2.2061;2.1722 -;-;-;-;-;-;-;-;-;- 862 NaN NaN 165516.4 NaN 11637 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14782 64.663 NaN 442740 35 0 84185 0.261 + 23223 RFVNVVPTF 9 73 539.8050559818482 1077.5955590304964 2 539.8058471679688 MULTI HCD FTMS 0 0 0 14778 100534.0703125 0.11520037391624448 14 -0.3668060302734375 4 Unmodified _RFVNVVPTF_ ENSG00000149806|ENST00000529639|FAU 24.020572477871973 0.15282392193088168 1 {I|L}{I|L}S{M(Oxidation (M))|F} 4 8 25.037 0 0 2.3234 0 0 599.3517276843334 0 599.3517276843334 0 1.3206844429176101 0 0 0 0 0 0.2614393726401688 0 {I|L}{I|L}S{M(Oxidation (M))|F} 2.3234 - 73 + NaN NaN 147268.5 NaN 11638 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14783 64.667 NaN 554170 35 0 71228 0.261 -1 KHSFPRML 8 81 516.2758713208177 1030.5371897084353 2 516.761474609375 MULTI HCD FTMS 0 0 0 14778 21011.677734375 0.1398205671542937 23 -0.615692138671875 5 Oxidation (M) _KHSFPRM(Oxidation (M))L_ ENSG00000100897|ENST00000446197|DCAF11;ENST00000396936.5_1_14:24584803-24587275:+|nuORF;ENST00000557802.5_1_14:24584825-24587275:+|nuORF;ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-2|DCAF11 12.531546534597751 0.5015908124873912 1 [YN]{I|L}[H{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8 -1 + 36.655 0 0 3.5569 3.5569 82.702 0 0 0 7.323937598229687 6.9897000433601875 6.9897000433601875 7.323937598229687 0 0 2 0 0 [YN]{I|L}[H{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YG]G{I|L}[H{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG][H{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YG][HA][{I|L}V]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}Q[{I|L}V]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.5569;2.8462;0.82502;0.7909;0.62526 -;-;-;-;- 472 NaN NaN 175748.8 NaN 11639 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14784 64.67 NaN 747290 35 0 59882 0.261 + 14072 KYVTVYNLI 9 92 556.8210122242411 1111.6274715152822 2 556.8212280273438 MULTI HCD FTMS 0 0 0 14778 233778.484375 0.3488863672846395 -6 0.1836700439453125 6 Unmodified _KYVTVYNLI_ ENSG00000138592|ENST00000307179|USP8;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;USP8-MYEF2|1|fusion 79.59630418116434 0.005983006570063981 1 [YV]KTVYN{I|L}{I|L} 9 2 + 75.601 0 0 6.8009 6.8009 88.461 0 0 0 1.9053676826723631 39.31749681984065 1.9053676826723631 9.018637558036673 0 2.048455006504028 1.0969100130080565 0.7302046884880937 0.2742275032520141 [YV]KTVYN{I|L}{I|L};[YV]KTVNY{I|L}{I|L};[YV]KTVYGG{I|L}{I|L};[YK]VTVYN{I|L}{I|L};[YV]KTVGGY{I|L}{I|L};[YK]VTVNY{I|L}{I|L};[YK]VTVYGG{I|L}{I|L};[Y{I|L}]Y[VS]KN{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}YV[YK]S{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}YV[KS]Y{I|L}{I|L} 6.8009;5.9896;5.9726;5.7539;5.1613;4.9426;4.9256;4.5559;4.4968;4.3384 -;-;-;+;-;-;-;-;-;- + 3283 NaN NaN 198082.9 NaN 11640 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14785 64.673 NaN 249570 35 0 17049 0.261 + 25772 SLFGMSALLL 10 70 526.2941853912077 1050.5738178492154 2 526.78369140625 MULTI HCD FTMS 0 0 0 14778 10863.6728515625 0.36057021586045956 -5 0.1475067138671875 7 Unmodified _SLFGMSALLL_ ENSG00000143252|ENST00000367975|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;nc|ENSG00000143252|Q99643-5|SDHC 24.020572477871973 0.2864316864133941 1 GE{[QN]|[E{I|L}]|[KN]}WS{I|L} 7 8 24.269 0 0 2.3101 0 0 218.14938625234737 0 218.14938625234737 0 -1.6996962110517444 -1.6996962110517444 0 0 0.3494850021680094 0 0.6549471895720985 0 GE{[QN]|[E{I|L}]|[KN]}WS{I|L} 2.3101 - 101 + NaN NaN 127351.9 NaN 11641 3142 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14787 64.678 NaN 1245500 35 0 120100 0.327 + 29084 TYGEIFEKF 9 112 567.2791460627044 1132.5437391922087 2 567.279296875 MULTI HCD FTMS 0 0 0 14786 540592.4375 0.021925264605468283 59 -1.612152099609375 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 90.13494162714682 0.004522430935000059 1 TYW{M(Oxidation (M))|F}{I|L}EK 7 4 61.12 0 0 5.3967 0 0 0 162.05593286685783 162.05593286685783 -2.965949657193633 0 -2.965949657193633 0 0 1.9802046884880937 2 0.3807196863200844 0 TYW{M(Oxidation (M))|F}{I|L}EK 5.3967 - 2560 + NaN NaN 274264.5 NaN 11642 3143 14786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14788 64.683 NaN 897770 35 0 89723 0.261 + 24420 RYLADLPTL 9 94 531.303009816087 1060.5914666989738 2 531.3031616210938 MULTI HCD FTMS 0 0 0 14786 127267.3828125 0.32849606536114306 4 -0.11142730712890625 2 Unmodified _RYLADLPTL_ ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 55.50274090549119 0.023872834264864425 1 [YR][{I|L}A]D{I|L}PT{I|L} 9 0 [YR][{I|L}A]D + + 41.797 -0.50644 -0.081907 3.9409 3.9409 60.047 0 0 0 0 21.206743012379476 0 0 0 1.6307196863200843 0 1.2302046884880937 0 + + [YR][{I|L}A]D{I|L}PT{I|L} 3.9409 + + 265 + NaN NaN 217566.1 NaN 11643 3143 14786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14789 64.686 NaN 486190 35 0 54774 0.261 + 14079 KYWDVPPPGF 10 80 603.3024488805338 1204.5903448278675 2 603.3033447265625 MULTI HCD FTMS 0 0 0 14786 137585.671875 0.3570203005082425 -17 0.4984283447265625 3 Unmodified _KYWDVPPPGF_ ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 19.361941925380144 0.3300069447713393 1 YVGPP{[WS]|[C(Carbamidomethyl (C)){I|L}]}TW{I|L} 10 9 + 66.04 0 0 5.4824 5.4824 88.525 0 0 0 47.80832766146821 7.019060916568719 7.019060916568719 11.923913079345162 0 1.6382104921644451 2 0.3494850021680094 0 YVGPP{[WS]|[C(Carbamidomethyl (C)){I|L}]}TW{I|L};YVGPP{[WS]|[C(Carbamidomethyl (C)){I|L}]}[VG]P{M(Oxidation (M))|F};[YV][VG]{[WS]|[C(Carbamidomethyl (C)){I|L}]}PPGP{M(Oxidation (M))|F};YVGPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PG]P{M(Oxidation (M))|F};YVGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[PG]P{M(Oxidation (M))|F};[YV][PG]P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};[YV][PG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};YVGPV{[WS]|[C(Carbamidomethyl (C)){I|L}]}[PG]P{M(Oxidation (M))|F};[YV][PG]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VPGP{M(Oxidation (M))|F};[PA][{M(Oxidation (M))|F}T]P{[WS]|[C(Carbamidomethyl (C)){I|L}]}TW{I|L} 5.4824;4.4925;4.1918;4.0372;4.0372;3.7365;3.7365;3.226;2.9253;1.106 -;-;-;-;-;-;-;-;-;- 673 + NaN NaN 153346.8 NaN 11644 3143 14786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14790 64.69 NaN 602580 35 0 135740 0.261 + 18712 MYPYIYHVL 9 65 607.7986996579364 1213.5828463826726 2 607.7993774414062 MULTI HCD FTMS 0 0 0 14786 188937.03125 1 0 0 4 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 93.76273176245871 0.004427368897683185 1 [Y{M(Oxidation (M))|F}]PY{I|L}YHV{I|L} 9 0 + 64.051 0 0 5.2779 5.2779 91.925 0 0 0 5.6424927368725974 54.31926257837823 5.6424927368725974 64.05123765425856 0 2.1989700043360187 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}YHV{I|L} 5.2779 + + 134 NaN NaN 167471.5 NaN 11645 3143 14786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14791 64.693 NaN 209380 35 0 43669 0.264 + -1 PCHCGPHC 8 50 455.65988115964655 909.3052093860931 2 455.66033935546875 MULTI HCD FTMS 0 0 0 14786 19256.166015625 0.19967587768292341 4 -0.11142730712890625 5 Carbamidomethyl (C) _PC(Carbamidomethyl (C))HCGPHC_ REV__nc|ENSG00000197558|A2VEC9|SSPOP 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.22578541324 0 744.22578541324 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 10 + NaN NaN 110004.9 NaN 11646 3143 14786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14792 64.696 NaN 239640 35 0 21004 0.261 -1 ICKVEEVF 8 65 512.2646428626871 1022.5147327921742 2 512.2528076171875 MULTI HCD FTMS 0 0 0 14786 16473.748046875 0.5504601591542819 -2 0.0622406005859375 6 Carbamidomethyl (C) _IC(Carbamidomethyl (C))KVEEVF_ ENST00000601399.3_1_3:14179396-14186982:+|nuORF 14.581692164780916 0.48650662947107914 1 VE[HV]EV{M(Oxidation (M))|F} 7 -1 35.265 0 0 3.4489 0 0 165.10240439539433 0 165.10240439539433 0 9.067591625658977 0 0 0 0 0 0.6549471895720984 0 VE[HV]EV{M(Oxidation (M))|F} 3.4489 - 160 + NaN NaN 118927.5 NaN 11647 3143 14786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14794 64.701 NaN 2003300 35 0 97511 0.327 + 29354 TYPKEEELYA 10 125 621.8006828905606 NaN 0 621.81689453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TYPKEEELYA_ ENSG00000116209|ENST00000234831|TMEM59 18.1463463914782 0.29565035219289926 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 7 10 42.997 0 0 3.4631 0 0 65.05275643214561 208.03656946353752 273.08932589568315 0 0 0 0 0 0 0 0.5941876774005248 0.816901560044258 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 3.4631 - 6079 + NaN NaN 386052.1 NaN 11648 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14795 64.706 NaN 1603300 35 0 321430 0.261 + 14029 KYTSWYVAL 9 86 565.7976757030947 1129.5807984729893 2 565.7853393554688 MULTI HCD FTMS 0 0 0 14793 135996.328125 0.984931409964439 -1 0.0229034423828125 2 Unmodified _KYTSWYVAL_ ENSG00000138685|ENST00000644866|FGF2;nc|ENSG00000138685|P09038-1|FGF2;nc|ENSG00000138685|P09038-3|FGF2;nc|ENSG00000138685|P09038|FGF2 26.268140514670165 0.13340543277302316 1 {I|L}ADM{[QG]|[NA]}A{I|L}{M(Oxidation (M))|F} 9 8 56.094 0 0 4.9659 0 0 165.10414154646327 0 165.10414154646327 0 19.647642715192504 0 0 0 0.3252574989159953 0 0.4247425010840047 0.6989700043360187 {I|L}ADM{[QG]|[NA]}A{I|L}{M(Oxidation (M))|F} 4.9659 - 1498 + NaN NaN 335894.3 NaN 11649 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14796 64.709 NaN 943270 35 0 104050 0.261 -1 MYPYIYHVL 9 104 607.7999365255617 1213.5853201179234 2 608.822265625 MULTI HCD FTMS 0 0 0 14793 29090.4296875 0.5430841878757785 3 -0.08852386474609375 3 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 28.173230860318316 0.11963627304438548 1 [Y{I|L}]ND[R{I|L}]{I|L}Y 8 -1 39.416 0 0 3.2479 0 0 0 160.013083719079 160.013083719079 19.846716107517658 0 0 0 0 0 1.154901959985743 0.3494850021680094 1.6906140654642812 [Y{I|L}]ND[R{I|L}]{I|L}Y 3.2479 - 792 NaN NaN 237543.2 NaN 11650 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14797 64.712 NaN 1381700 35 0 85929 0.261 + 22708 QYASAFHFL 9 90 542.2668609850439 1082.5191690368877 2 542.266845703125 MULTI HCD FTMS 0 0 0 14793 429061.625 0.5237094788023483 -4 0.11127471923828125 4 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 81.61307344734483 0.005330412723537057 1 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 8 6 58.894 0 0 5.4404 0 0 165.07859999824376 0 165.07859999824376 0 25.6449432725406 0 0 0 0.8283409326844268 0 0.5 0 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 5.4404 - 1440 NaN NaN 289679.8 NaN 11651 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14798 64.716 NaN 1048000 35 0 77469 0.261 -1 NSPRMDLTL 9 90 531.7661074803768 1061.5176620275536 2 531.7664794921875 MULTI HCD FTMS 0 0 0 14793 290810.9375 0.560864524332677 -4 0.11127471923828125 5 Oxidation (M) _NSPRM(Oxidation (M))DLTL_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant 45.69961567697781 0.039180348357221985 1 D{I|L}T{I|L} 4 -1 43.248 0 0 4.0741 0 0 601.2629818982407 0 601.2629818982407 0 22.35703261914636 0 0 0 1.0941876774005248 0 0.6643943297944485 0 D{I|L}T{I|L} 4.0741 + + 396 NaN NaN 239781.7 NaN 11652 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14799 64.719 NaN 436510 35 0 44372 0.261 + 21566 PYMAKFVVF 9 83 559.2909168091152 1116.5672806850303 2 559.2913208007812 MULTI HCD FTMS 0 0 0 14793 245430.203125 0.6177186141203788 7 -0.18308258056640625 6 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 81.61307344734483 0.005330412723537057 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 2 + 91.269 0 0 8.1741 8.1741 88.398 0 0 0 24.678477052876815 56.320976736979404 24.678477052876815 3.406206186877938 0 2.06295299324845 1.5228787452803376 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]KV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]VK[EC]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]K{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VV{M(Oxidation (M))|F};PS{[QV]|[N{I|L}]|[RA]|[KV]}V[RN]GN{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[PA]{[HG]|PP}MV{M(Oxidation (M))|F} 8.1741;7.8691;7.4417;4.4375;4.1789;4.1325;3.7051;3.177;3.1509;3.0787 -;+;-;-;-;-;-;-;-;- + 1293 NaN NaN 156249.3 NaN 11653 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14800 64.722 NaN 383670 35 0 40712 0.261 + 16735 LYANMFERL 9 76 578.7944732162439 1155.5743934992877 2 578.7948608398438 MULTI HCD FTMS 0 0 0 14793 164275.453125 0.542938646284421 5 -0.12746429443359375 7 Unmodified _LYANMFERL_ ENSG00000004478|ENST00000001008|FKBP4 69.33821966488729 0.009302356455414924 1 {I|L}YANM{M(Oxidation (M))|F}ER{I|L} 9 0 + 89.689 0 0 7.7615 7.7615 91.074 0 0 0 78.98834371105593 7.504311474114331 7.504311474114331 9.208187539523749 0 2.028659694992122 2 0.6549471895720984 0 + + {I|L}YANM{M(Oxidation (M))|F}ER{I|L};{I|L}YAGGM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]ANM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGGM{M(Oxidation (M))|F}ER{I|L};{I|L}Y[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}[DG]{I|L}{I|L};[Y{I|L}]A{[CA]|SS}A{M(Oxidation (M))|F}ER{I|L} 7.7615;6.9646;5.2861;4.1598;3.997;3.6007 +;-;+;-;-;- + 558 + NaN NaN 159661.2 NaN 11654 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14801 64.726 NaN 297220 35 0 40831 0.261 + 32149 VYSNSIYEL 9 60 544.2690641769922 1086.5235754207843 2 544.269287109375 MULTI HCD FTMS 0 0 0 14793 195444.28125 0.29454285746579484 5 -0.12746429443359375 8 Unmodified _VYSNSIYEL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 75.76082778847304 0.0072241045649327805 1 {I|L}YE{I|L} 4 5 40.037 0 0 3.6849 0 0 550.2388783185562 0 550.2388783185562 0 30.573193899842437 0 0 0 0.8807196863200843 0 0.3807196863200844 0 + {I|L}YE{I|L} 3.6849 + + 55 NaN NaN 119299.8 NaN 11655 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14802 64.729 NaN 416060 35 0 36891 0.261 + 25609 SGDSPTPRTL 10 84 515.7626785553007 1029.5108041774013 2 515.7633666992188 MULTI HCD FTMS 0 0 0 14793 105869.6328125 0.6115596500358416 2 -0.0623016357421875 9 Unmodified _SGDSPTPRTL_ ENST00000538502.5_2_1:109856041-109856413:-|nuORF 24.990960013464015 0.27735500881591096 1 [YN]{I|L}S{[VA]|[{I|L}G]}Q 7 9 56.145 0 0 5.4535 0 0 0 251.10122095279533 251.10122095279533 17.455473983377146 0 0 0 0 1.5994850021680094 2 0.805462187404089 0 [YN]{I|L}S{[VA]|[{I|L}G]}Q 5.4535 - 224 + NaN NaN 142369.6 NaN 11656 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14803 64.732 NaN 1284500 35 0 489080 0.262 -1 0 52 406.21659614654493 1215.6279590398349 3 406.216796875 MULTI HCD FTMS 0 0 0 14793 236032.203125 0.4147361990813573 -4 0.11127471923828125 10 NaN NaN 1 {I|L}R{I|L}Y{M(Oxidation (M))|F} 5 -1 57.959 0 0 4.7678 0 0 505.2162300952304 0 505.2162300952304 0 56.36500636031869 0 0 0 2 0 0 0 {I|L}R{I|L}Y{M(Oxidation (M))|F} 4.7678 - 64 + NaN NaN 271242.2 NaN 11657 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14804 64.736 NaN 558630 35 0 51506 0.261 + -1 EPMQIILSM 9 87 539.2675119431769 NaN 0 539.2785034179688 PEAK HCD FTMS 0 0 0 14793 10809.443359375 0.17135888058128884 -6 0.17035675048828125 11 Oxidation (M) _EPMQIILSM(Oxidation (M))_ REV__ENSG00000136425|ENST00000258930|CIB2;REV__nc|ENSG00000136425|O75838-2|CIB2;REV__nc|ENSG00000136425|O75838-3|CIB2 23.1484247019978 0.16626532474190622 1 S{I|L}{I|L}E 4 -1 25.79 0 0 2.3957 0 0 165.01822316641284 466.2294100397094 631.2476332061223 0 0 0 0 0 0 0 0.6861818737241735 0 S{I|L}{I|L}E 2.3957 - 140 + NaN NaN 161830.4 NaN 11658 3144 14793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14806 64.741 NaN 1958000 35 0 434840 0.327 + 24693 RYLTVAAVF 9 80 520.3002137463006 1038.5858745594012 2 520.3004760742188 MULTI HCD FTMS 0 0 0 14805 753514.4375 0.032133765569332035 32 -0.8541641235351562 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 41.8396318013385 0.056899836730939755 1 AAV{M(Oxidation (M))|F} 4 5 47.805 0 0 4.6029 0 0 632.3650615709611 0 632.3650615709611 0 40.81546893236258 0 0 0 1.586696871556164 0 0 0 + AAV{M(Oxidation (M))|F} 4.6029 + + 128 NaN NaN 371257.7 NaN 11659 3145 14805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14807 64.745 NaN 1498600 35 0 346160 0.261 + 30878 VQPSLFYHL 9 104 552.2977490159989 1102.5809450987977 2 552.298095703125 MULTI HCD FTMS 0 0 0 14805 509699.0625 0.6634126424952405 3 -0.0652008056640625 2 Unmodified _VQPSLFYHL_ ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6 31.26834338654808 0.10542797264966089 1 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 8 7 50.469 0 0 4.5773 0 0 165.16351201088258 0 165.16351201088258 0 25.04599948109863 0 0 0 0 0 1.305462187404089 0.555462187404089 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 4.5773 - 1342 + NaN NaN 315963.8 NaN 11660 3145 14805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14808 64.749 NaN 653570 35 0 49890 0.261 -1 0 69 604.7680411660131 1207.521529398826 2 604.7682495117188 MULTI HCD FTMS 0 0 0 14805 261575.609375 0.08207852797605945 -15 0.4237060546875 3 NaN NaN 1 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 -1 59.858 0 0 4.9571 0 0 438.1935079144407 0 438.1935079144407 0 40.81669420019658 0 0 0 1.8494850021680094 0 0 0.7742275032520141 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.9571 - 707 NaN NaN 188134 NaN 11661 3145 14805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14809 64.752 NaN 179540 35 0 27116 0.261 -1 YNAPTDHGLCI 11 50 630.7878617904959 1259.5611706477916 2 630.7880249023438 MULTI HCD FTMS 0 0 0 14805 96737.515625 0.31092091977375774 8 -0.1897125244140625 4 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 15.248480904072842 0.3242218977034194 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VY 7 -1 72.211 0 0 5.733 0 0 0 428.19541345767817 428.19541345767817 51.24175720442146 0 0 0 0 2.3494850021680094 2 0 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VY 5.733 - 76 + NaN NaN 104139.1 NaN 11662 3145 14805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14810 64.755 NaN 313650 35 0 15214 0.262 + 33927 YLRASELSL 9 76 526.2941853912077 1050.5738178492154 2 526.281982421875 MULTI HCD FTMS 0 0 0 14805 38876.69140625 0.9452499741188293 1 -0.02283477783203125 5 Unmodified _YLRASELSL_ ENST00000317114.1_1_18:3596827-3597223:+|nuORF;ENST00000576606.5_1_18:3594116-3597223:+|nuORF 26.88365393820708 0.12808753336095696 1 [Y{I|L}]Q{[MS]|[{M(Oxidation (M))|F}A]}[{I|L}A]{I|L}{I|L} 9 4 + 22.742 0 0 2.1647 2.1647 79.332 0 0 0 2.040835725535718 -4.1693141692309865 -4.1693141692309865 1.3055192995032918 0 0.4247425010840047 1.154901959985743 0.3054621874040891 0 [Y{I|L}]Q{[MS]|[{M(Oxidation (M))|F}A]}[{I|L}A]{I|L}{I|L};[Y{I|L}]R{I|L}D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[Y{I|L}]N[MT][{I|L}A]{I|L}{I|L};[Y{I|L}]Q[KQ]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[Y{I|L}]RD{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[Y{I|L}]R{I|L}[YN]P{I|L};[Y{I|L}]R{I|L}[YN]{I|L}P;[Y{I|L}]R{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}YP;[R{I|L}]{I|L}YD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[Y{I|L}][VG]{I|L}D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 2.1647;2.0404;1.7106;1.4898;1.4187;1.2955;1.27;1.2265;1.201;1.1588 -;-;-;-;-;-;-;-;-;- 1074 NaN NaN 125870.7 NaN 11663 3145 14805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14811 64.759 NaN 113180 35 0 16719 0.261 + -1 LFCETIMFTL 10 39 637.811639013488 1273.608725093776 2 637.8115844726562 MULTI HCD FTMS 0 0 0 14805 52871.15625 0.41611728080298765 7 -0.17315673828125 6 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))ETIMFTL_ REV__ENSG00000279961|ENST00000623286|OR8U3 5.731851221503515 0.44496410492002586 1 W{M(Oxidation (M))|F}[{I|L}T] 4 -1 23.188 0 0 1.8206 0 0 708.3118633767823 0 708.3118633767823 0 21.40485100867506 0 0 0 1 0 0 0 W{M(Oxidation (M))|F}[{I|L}T] 1.8206 - 8 + NaN NaN 101269.6 NaN 11664 3145 14805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14813 64.763 NaN 2593800 35 0 447520 0.327 + 20137 NYISGIQTI 9 95 504.771584415814 1007.528615898428 2 504.7718200683594 MULTI HCD FTMS 0 0 0 14812 1408603.25 0.7714642938781456 2 -0.04236602783203125 1 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 184.3555567057281 7.78523872066095E-13 1 [YN]{I|L}SG{I|L}QT{I|L} 9 0 + 117.39 0 0 11.652 11.652 94.323 0 0 0 30.87128018967597 51.16750554106318 30.87128018967597 9.208187539523749 0 2.4604093769761874 1.5228787452803376 1.316901560044258 1.579689690656103 + + [YN]{I|L}SG{I|L}QT{I|L};[YN]{I|L}SG{I|L}[AG]T{I|L};[{I|L}T]Q{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]Q{[VA]|[{I|L}G]}S[YN]{I|L};[{I|L}T]E[KQ]{I|L}YN;[QT]{I|L}{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]E[KQ][YN]{I|L};[{I|L}T][AG]{[VA]|[{I|L}G]}S{I|L}YN;[QT]{I|L}{[VA]|[{I|L}G]}S[YN]{I|L};[QT][SG]{I|L}{I|L}{I|L}YN 11.652;10.738;4.7819;4.0431;3.7512;3.3828;3.0124;2.7826;2.644;0.86182 +;-;-;-;-;-;-;-;-;- + 901 NaN NaN 479786.8 NaN 11665 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14814 64.768 NaN 1197900 35 0 149780 0.261 + 35495 YYFPVKNVI 9 104 571.8157113536367 1141.6168697740734 2 571.7978515625 MULTI HCD FTMS 0 0 0 14812 229629.15625 0.41289913328713684 -4 0.11132049560546875 2 Unmodified _YYFPVKNVI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 28.486842064014134 0.11819662193267319 1 YY{I|L}THG{I|L}Y 8 7 34.211 0 0 2.9967 0 0 0 128.10757041708237 128.10757041708237 11.636474606673488 0 0 0 0 0 1.6989700043360187 1.0044321917401078 0 YY{I|L}THG{I|L}Y 2.9967 - 923 NaN NaN 268378.4 NaN 11666 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14815 64.771 NaN 713940 35 0 155590 0.262 -1 LLSICLDD 8 70 467.23323308066614 932.4519132281323 2 467.2335205078125 MULTI HCD FTMS 0 0 0 14812 388706.28125 0.680781351235883 -7 0.1998291015625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLSICLDD_ ENST00000414195.6_1_2:145780810-145939628:+|nuORF;ENST00000420472.1_1_2:145780789-145929735:+|nuORF;ENST00000451478.5_1_2:145780789-145939807:+|nuORF;ENST00000595686.5_1_2:145693006-145939807:+|nuORF;ENST00000596034.5_2_2:145780810-145939776:+|nuORF;ENST00000599187.5_1_2:145875193-145939807:+|nuORF;ENST00000602041.5_2_2:145875217-145939776:+|nuORF;ENST00000605238.3_1_2:145929591-145938821:+|nuORF;ENST00000608432.5_2_2:145780810-145939776:+|nuORF;ENST00000609705.5_1_2:145780810-145938583:+|nuORF 2.577480529830294 0.5381683276125971 1 {I|L}{I|L}K 3 -1 24.253 0 0 2.6009 0 0 59.04681732819808 516.1181124322874 575.1649297604855 0 0 0 0 0 0 0 0 1.1549471895720984 {I|L}{I|L}K 2.6009 - 39 + NaN NaN 195487.2 NaN 11667 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14816 64.775 NaN 714150 35 0 75152 0.261 + 35196 YVLFCRELSG 10 87 593.7986901241773 1185.5828273151544 2 595.2894897460938 MULTI HCD FTMS 0 0 0 14812 26098.30859375 0.6599935651988886 4 -0.0946197509765625 4 Unmodified _YVLFCRELSG_ REV__ENSG00000161847|ENST00000617231|RAVER1;REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF;REV__nc|ENSG00000161847|Q8IY67-2|RAVER1;REV__nc|ENSG00000161847|Q8IY67|RAVER1 13.042465956692817 0.38911719078024076 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VYP 8 -1 45.45 0 0 3.8336 0 0 0 141.06444546103685 141.06444546103685 6.06533002912424 0 0 0 0 0 2 0.3054621874040891 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VYP 3.8336 - 3550 NaN NaN 186283 NaN 11668 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14817 64.778 NaN 580380 35 0 119240 0.261 + 14080 KYWDVPPPGF 10 63 603.3024488805338 1204.5903448278675 2 603.302734375 MULTI HCD FTMS 0 0 0 14812 169308 0.4393363946600964 -14 0.39090728759765625 5 Unmodified _KYWDVPPPGF_ ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 29.84058131909904 0.23356904650364865 1 [YV]GPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F} 11 7 + 69.992 0 0 5.8105 5.8105 62.987 0 0 0 1.7165906731557357 1.7165906731557357 1.7165906731557357 0 0 0.5 2 0 0 [YV]GPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};YVGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};YVGPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};[YV]PG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};[YV]PGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};YVGPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GPP{M(Oxidation (M))|F};YVGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGPP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]Y{M(Oxidation (M))|F};YVGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]Y{M(Oxidation (M))|F} 5.8105;5.8105;5.6679;5.6679;5.5795;5.5795;5.437;5.437;5.1787;5.0749 -;-;-;-;-;-;-;-;-;- 838 NaN NaN 168853.4 NaN 11669 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14818 64.781 NaN 207530 35 0 48639 0.264 + 25047 SAALDVEL 8 47 409.2185171775521 816.4224814219042 2 409.21875 MULTI HCD FTMS 0 0 0 14812 120791.3125 1 0 0 6 Unmodified _SAALDVEL_ ENSG00000163479|ENST00000295702|SSR2;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF 81.61307344734483 0.016289852701728367 1 {[SA]|[TG]}A{I|L}DVE{I|L} 8 0 + 71.52 0 0 8.7602 8.7602 90.261 0 0 0 4.6040937697618745 54.53070327321406 4.6040937697618745 5.445764889587537 0 2.1861818737241734 0 0.805462187404089 0 + + {[SA]|[TG]}A{I|L}DVE{I|L};[QT]{I|L}DVE{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}VE{I|L};{[QN]|[E{I|L}]|[KN]}[DV][QT]{I|L} 8.7602;8.0932;5.8607;1.2815 +;-;-;- + 122 NaN NaN 112157.1 NaN 11670 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14819 64.785 NaN 148520 35 0 20239 0.261 + 3401 EEYAMTVV 8 46 471.2177273062202 940.4209016792404 2 471.2177429199219 MULTI HCD FTMS 0 0 0 14812 51979.23828125 0.24607962775650105 7 -0.16687774658203125 7 Unmodified _EEYAMTVV_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 5.230669730166228 0.5342319408533849 1 VV 2 -1 25.969 0 0 2.7614 0 0 724.2736197250689 0 724.2736197250689 0 25.969100130080562 0 0 0 0.5 0 0 0 VV 2.7614 + + 5 NaN NaN 97446 NaN 11671 3146 14812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14821 64.79 NaN 992360 35 0 89892 0.327 + 32174 VYSRTFTWL 9 96 586.8083791463571 1171.602205359514 2 586.8087768554688 MULTI HCD FTMS 0 0 0 14820 481478.3125 0.32093913921612166 5 -0.1240997314453125 1 Unmodified _VYSRTFTWL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 93.93812099017352 0.0044227730261779084 1 [YV]SRT{M(Oxidation (M))|F}TW{I|L} 9 0 + 99.677 0 0 8.5078 8.5078 87.794 0 0 0 0.9247782126794846 0.9247782126794846 0.9247782126794846 0.9247782126794846 0 2.7059771852360797 2 1.305462187404089 0 + + [YV]SRT{M(Oxidation (M))|F}TW{I|L};VYR{M(Oxidation (M))|F}TSTW{I|L};VYRST{M(Oxidation (M))|F}TW{I|L};VYSRT{M(Oxidation (M))|F}TW{I|L};[YV][R{M(Oxidation (M))|F}]TSTW{I|L};[{M(Oxidation (M))|F}T]TRT{M(Oxidation (M))|F}TW{I|L};[YV]SRTWT{M(Oxidation (M))|F}{I|L};[YV]SR{[WS]|[C(Carbamidomethyl (C)){I|L}]}YV{I|L};[YV]SR{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{I|L};[YV]SRTWVYV 8.5078;8.4288;8.3161;8.1196;7.2878;6.0343;5.5557;5.0414;4.9978;4.6826 +;-;-;+;-;-;-;-;-;- + 6751 NaN NaN 235160.8 NaN 11672 3147 14820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14822 64.794 NaN 374180 35 0 26979 0.261 + 31797 VYMDWYEKF 9 74 648.7837956152945 1295.5530382973889 2 648.7841186523438 MULTI HCD FTMS 0 0 0 14820 105337.328125 0.045017621112663046 49 -1.3311691284179688 2 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 69.33821966488729 0.009302356455414924 1 [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 91.807 0 0 7.0863 7.0863 88.495 0 0 0 1.0692333047950342 77.82760017977509 1.0692333047950342 7.7815125038364386 0 2.774227503252014 2 0.3252574989159953 0 + + [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYE{M(Oxidation (M))|F}K;VY{M(Oxidation (M))|F}DWY[VG]T{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYT[VG]{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[KQ]T{M(Oxidation (M))|F};YY[{M(Oxidation (M))|F}E]{[VA]|[{I|L}G]}N{M(Oxidation (M))|F}P{M(Oxidation (M))|F};VEE{NN|[MP]|[D{I|L}]|[EV]}WD{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 7.0863;6.4857;6.2471;5.2739;5.0676;4.1855;3.0247;2.5226 +;-;-;-;-;-;-;- + 556 NaN NaN 138617.5 NaN 11673 3147 14820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14823 64.798 NaN 311610 35 0 42479 0.263 + 22172 QLAALICGLF 10 64 524.7963625397092 1047.5781721462183 2 524.7966918945312 MULTI HCD FTMS 0 0 0 14820 86978.859375 0.809742104713843 -5 0.137542724609375 3 Unmodified _QLAALICGLF_ ENSG00000120800|ENST00000261637|UTP20 34.10243960390752 0.1965851268881605 1 [Q{I|L}]A 3 7 23.406 0 0 2.2343 0 0 0 732.375205187487 732.375205187487 1.200273296658935 0 0 0 0 0.5 1.2218487496163564 0 0.28872548999643577 + [Q{I|L}]A 2.2343 + + 52 NaN NaN 143343 NaN 11674 3147 14820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14824 64.801 NaN 190090 35 0 18189 0.261 -1 NYALKMFLY 9 72 589.798765031718 1177.5829771302358 2 589.8009643554688 MULTI HCD FTMS 0 0 0 14820 38579.5078125 0.6533454507062043 9 -0.2292633056640625 4 Oxidation (M) _NYALKM(Oxidation (M))FLY_ ENSG00000009844|ENST00000367630|VTA1;nc|ENSG00000009844|Q9NP79-2|VTA1 24.020572477871973 0.15282392193088168 1 AKM 3 -1 21.937 0 0 1.8629 0 0 829.4382760577734 0 829.4382760577734 0 1.9268061001575596 0 0 0 1.024227503252014 0 0 0.4247425010840047 AKM 1.8629 - 73 + NaN NaN 108292.5 NaN 11675 3147 14820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14826 64.806 NaN 1684000 35 0 167110 0.327 + 10953 IYDKFIAQL 9 108 555.8133642304546 NaN 0 555.8135375976562 PEAK HCD FTMS 0 0 0 14825 729848.375 1 0 0 1 Unmodified _IYDKFIAQL_ ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1 114.18643581695662 1.6649804195458256E-08 1 QA{I|L}{M(Oxidation (M))|F}KD 6 8 60.355 0 0 5.4392 0 0 131.09434855967191 273.1244401778683 404.2187887375402 0 0 0 0 0 2.6861818737241734 0 0.3054621874040891 0.3807196863200844 QA{I|L}{M(Oxidation (M))|F}KD 5.4392 - 1265 + NaN NaN 342889.4 NaN 11676 3148 14825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14827 64.81 NaN 1110600 35 0 49365 0.261 + 27168 SYNNFFRMF 9 107 621.2740788742191 1240.533604815238 2 621.2742309570312 MULTI HCD FTMS 0 0 0 14825 507654.1875 0.09163241121666045 20 -0.553375244140625 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.706 0 0 6.5058 6.5058 88.85 0 0 0 9.771212547196626 13.520644010699641 9.771212547196626 9.208187539523749 0 2.9247425010840047 0 0.8829131673969606 1.579689690656103 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NN[MT];{[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}A]W{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R[QP]SNN[MT];{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NN[MT] 6.5058;5.7635;5.7635;5.7181;4.9758;4.3754;2.5078;2.4134;2.2987;2.2197 +;-;-;-;-;-;-;-;-;- + 5690 NaN NaN 249153.6 NaN 11677 3148 14825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14828 64.814 NaN 1341700 35 0 109250 0.261 + 35496 YYFPVKNVI 9 107 571.8157113536367 1141.6168697740734 2 571.81591796875 MULTI HCD FTMS 0 0 0 14825 439170.4375 0.7896780006963192 -2 0.04236602783203125 3 Unmodified _YYFPVKNVI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 67.34385681178166 0.00994769994983633 1 YY{M(Oxidation (M))|F}[VP]KNV 8 1 48.822 0 0 4.2766 0 0 0 128.06557002028651 128.06557002028651 26.43175948177209 0 0 0 0 1.610924374808178 2 0 0.3494850021680094 + YY{M(Oxidation (M))|F}[VP]KNV 4.2766 + + 809 NaN NaN 303276.6 NaN 11678 3148 14825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14829 64.817 NaN 125970 35 0 7359.5 0.261 + -1 TQRCPFSFTL 10 57 628.806761068228 1255.5989692032558 2 628.8065795898438 MULTI HCD FTMS 0 0 0 14825 55970.01953125 0.3308185032510816 7 -0.18035125732421875 4 Carbamidomethyl (C) _TQRC(Carbamidomethyl (C))PFSFTL_ REV__ENSG00000156510|ENST00000354624|HKDC1;REV__nc|ENSG00000156510|Q2TB90-2|HKDC1;REV__nc|ENSG00000156510|Q2TB90-3|HKDC1 15.248480904072842 0.3684828712757339 1 {M(Oxidation (M))|F}T{I|L} 3 -1 36.682 0 0 2.9215 0 0 876.3873393337637 0 876.3873393337637 0 21.22486274231747 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}T{I|L} 2.9215 + + 21 NaN NaN 99017.2 NaN 11679 3148 14825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14830 64.82 NaN 234970 35 0 27521 0.261 -1 FPAGYMYPSM 10 69 590.2457738184258 1178.4769947036516 2 590.24609375 MULTI HCD FTMS 0 0 0 14825 48281.734375 0.2218254211248762 -20 0.5512008666992188 5 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 25.399314129420986 0.2735354021946395 1 WMY[PS]{M(Oxidation (M))|F} 6 -1 29.43 0 0 2.4973 0 0 349.152147361525 0 349.152147361525 0 7.262809413564639 0 0 0 1.305462187404089 0 0 0 WMY[PS]{M(Oxidation (M))|F} 2.4973 - 98 NaN NaN 122486.1 NaN 11680 3148 14825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14831 64.824 NaN 382700 35 0 78765 0.261 + 8375 GYMEGYYTF 9 72 573.7262469290902 1145.4379409249802 2 573.7263793945312 MULTI HCD FTMS 0 0 0 14825 73469.8984375 0.18631937494670445 -5 0.12757110595703125 6 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 74.92900055777586 0.007493270374442853 1 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 80.869 0 0 7.0601 7.0601 93.495 0 0 0 22.35863111416478 56.687522094009 22.35863111416478 25.69599075987611 0 2.504432191740108 1.3979400086720375 0.7742275032520141 0 [YT]CEGYYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GYYT{M(Oxidation (M))|F} 7.0601;4.8167 -;- 186 NaN NaN 135968.4 NaN 11681 3148 14825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14833 64.829 NaN 1462300 35 0 171880 0.327 + 5161 FFDAELSQM 9 87 552.2390895993532 1102.4636262655063 2 552.2396850585938 MULTI HCD FTMS 0 0 0 14832 447380.09375 0.13013155717960603 -11 0.297821044921875 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 90.36 0 0 8.1962 8.1962 91.768 0 0 0 4.137342758552691 78.90600959017256 4.137342758552691 9.208187539523749 0 2.973197507588033 0 1.5044321917401078 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YCEAD[Y{I|L}];{[QV]|[N{I|L}]|[RA]|[KV]}YCEAV[YE];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAV[YE];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAAAAD[Y{I|L}] 8.1962;7.3609;5.0154;4.1802;3.7224;3.1335;2.3181;2.3087;2.2855;1.1311 +;-;-;-;-;-;-;-;-;- + 1325 NaN NaN 301511 NaN 11682 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14834 64.833 NaN 185510 35 0 24490 0.261 -1 YNAPTDHGLCI 11 57 630.7877762463431 1259.5609995594862 2 630.7872924804688 MULTI HCD FTMS 0 0 0 14832 46762.36328125 0.2717316003401921 -10 0.26499176025390625 2 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 15.248480904072842 0.3242218977034194 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 72.286 0 0 5.739 0 0 0 265.13117395572505 265.13117395572505 49.09887825920684 0 0 0 0 2.1307196863200843 1.6989700043360187 0 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 5.739 - 199 + NaN NaN 114201.5 NaN 11683 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14835 64.837 NaN 293150 35 0 18868 0.261 -1 NYALKMFLY 9 93 589.798765031718 1177.5829771302358 2 589.7997436523438 MULTI HCD FTMS 0 0 0 14832 22256.08984375 0.3769077387039986 11 -0.29506683349609375 3 Oxidation (M) _NYALKM(Oxidation (M))FLY_ ENSG00000009844|ENST00000367630|VTA1;nc|ENSG00000009844|Q9NP79-2|VTA1 30.636539890814138 0.10832830463492794 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]{I|L}NPY 9 -1 + 23.866 0 0 2.0267 2.0267 80.056 0 0 0 7.791255729271207 4.200335810349191 4.200335810349191 3.0102999566398125 0 0 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]{I|L}NPY;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]N{I|L}PY;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]NP{I|L}Y;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]{I|L}GGPY;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]GG{I|L}PY;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]GGP{I|L}Y 2.0267;1.7711;1.6111;1.2447;0.98911;0.82913 -;-;-;-;-;- 339 NaN NaN 133867.5 NaN 11684 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14836 64.84 NaN 257370 35 0 24044 0.261 -1 GCLIWEVF 8 60 512.2531482892351 1022.4917436452703 2 512.2528686523438 MULTI HCD FTMS 0 0 0 14832 35344.40234375 0.45651704909354685 4 -0.101715087890625 4 Carbamidomethyl (C) _GC(Carbamidomethyl (C))LIWEVF_ ENSG00000142186|ENST00000270176|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1 26.34127834903884 0.3999841173197873 1 EV{M(Oxidation (M))|F} 3 -1 28.659 0 0 2.8028 0 0 629.3011775997136 0 629.3011775997136 0 5.471062485323515 0 0 0 0.8494850021680094 0 0.3252574989159953 0 EV{M(Oxidation (M))|F} 2.8028 + + 51 NaN NaN 133400.6 NaN 11685 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14837 64.843 NaN 163800 35 0 16040 0.261 + 16922 LYGPSSVSF 9 51 478.7396462188789 955.4647395045578 2 478.7395324707031 MULTI HCD FTMS 0 0 0 14832 30119.927734375 0.25534953309727626 -4 0.0879974365234375 5 Unmodified _LYGPSSVSF_ ENSG00000149257|ENST00000358171|SERPINH1 68.08070601005525 0.009709267492204555 1 [Y{I|L}]G[PS]SVS{M(Oxidation (M))|F} 9 0 + 77.826 0 0 8.1454 8.1454 94.381 0 0 0 55.63486257521106 16.478174818886373 16.478174818886373 17.498774732165998 0 2 1.5228787452803376 0.8494850021680094 0 + + [Y{I|L}]G[PS]SVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[Q{I|L}]VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP][TA]VS{M(Oxidation (M))|F} 8.1454;6.314;5.2745 +;-;- + 112 + NaN NaN 109432.6 NaN 11686 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14838 64.847 NaN 184940 35 0 38759 0.261 + -1 PCHCGPHC 8 43 455.65988115964655 909.3052093860931 2 455.6600341796875 MULTI HCD FTMS 0 0 0 14832 39679.07421875 0.4114502317774917 10 -0.2755279541015625 6 Carbamidomethyl (C) _PC(Carbamidomethyl (C))HCGPHC_ REV__nc|ENSG00000197558|A2VEC9|SSPOP 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.2264720587478 0 744.2264720587478 0 3.037275116073344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 16 + NaN NaN 105256.8 NaN 11687 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14839 64.85 NaN 46541 35 0 3111.1 0.261 + 3547 EIQEQLHKQQ 10 36 640.8351636332777 NaN 0 640.6182250976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EIQEQLHKQQ_ ENSG00000197102|ENST00000360184|DYNC1H1 1.4819007175156935 0.33891598740166873 1 P 1 10 3.9794 0 0 0.31097 0 0 499.23568263589283 680.3325289361936 1179.5682115720865 0 0 0 0 0 0 0 0 0 P 0.31097 - 2 + NaN NaN 92259.5 NaN 11688 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14840 64.853 NaN 172350 35 0 8009.3 0.261 -1 0 59 625.1237146568252 NaN 0 625.3082275390625 PEAK HCD FTMS 0 0 0 14832 9483.119140625 0.34362256865983537 -1 0.022796630859375 8 NaN NaN 1 Q 1 -1 6.9897 0 0 0.55997 0 0 276.7770589616385 840.3699108512393 1117.1469698128778 0 0 0 0 0 0 0 0 0 Q 0.55997 - 1 + NaN NaN 109857.3 NaN 11689 3149 14832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14842 64.858 NaN 1426700 35 0 177100 0.327 + 11867 KFDDIRIYF 9 102 608.8214222990848 1215.6282916649695 2 608.8218994140625 MULTI HCD FTMS 0 0 0 14841 974640.9375 0.8172457413671772 2 -0.05570220947265625 1 Unmodified _KFDDIRIYF_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 135.71846124360977 0.0002581714079839297 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}R{I|L}Y{M(Oxidation (M))|F} 9 0 + 93.487 0 0 7.6904 7.6904 86.966 0 0 0 1.7613648864203668 7.441199184903823 1.7613648864203668 1.7613648864203668 0 1.8807196863200843 0 1.2585820071949732 2.128144697160131 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}R{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]ND{I|L}R{I|L}Y{M(Oxidation (M))|F};K{[CP]|[EA]}{I|L}R{I|L}DDKE;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}RY{I|L}{M(Oxidation (M))|F};[Y{I|L}]ND{I|L}RY{I|L}{M(Oxidation (M))|F};[Y{I|L}]GGD{I|L}R{I|L}Y{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]D{I|L}R{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]GGD{I|L}RY{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]D{I|L}RY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[KG][QA]{I|L}Y{M(Oxidation (M))|F} 7.6904;7.5455;7.0783;6.5001;6.3552;6.213;5.6156;5.0227;4.4253;4.2615 +;-;-;-;-;-;-;-;-;- + 1646 NaN NaN 302042.4 NaN 11690 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14843 64.862 NaN 1202500 35 0 72858 0.261 + 22709 QYASAFHFL 9 94 542.2668609850439 1082.5191690368877 2 542.2667846679688 MULTI HCD FTMS 0 0 0 14841 592458.5625 0.7231505846715225 2 -0.05570220947265625 2 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 131.29775728308752 0.0005262696486345744 1 H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 7 5 62.243 0 0 5.7498 0 0 278.1629278037868 0 278.1629278037868 0 32.44464103855016 0 0 0 0.9247425010840047 0 1.1549471895720984 0 H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 5.7498 - 1727 NaN NaN 269104 NaN 11691 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14844 64.866 NaN 999340 35 0 93296 0.261 + 29085 TYGEIFEKF 9 104 567.2791460627044 1132.5437391922087 2 567.279296875 MULTI HCD FTMS 0 0 0 14841 609804.4375 0.02473235421421567 66 -1.7881317138671875 3 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 96.36657018975838 0.004359138328518304 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 60.394 0 0 5.3326 5.3326 83.388 0 0 0 18.226825097560422 3.060931587959672 3.060931587959672 3.060931587959672 0 2.2619229975844686 1.6989700043360187 0.3494850021680094 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}[{I|L}T]K;{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]{M(Oxidation (M))|F}K;{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K 5.3326;5.0623;4.8895;4.6936;3.7232;3.7212;3.5369;3.485;3.453;3.3641 -;-;-;-;-;-;-;-;-;- 1419 NaN NaN 236762.5 NaN 11692 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14845 64.869 NaN 873380 35 0 116990 0.261 -1 NSPRMDLTL 9 71 531.7661074803768 1061.5176620275536 2 531.7666015625 MULTI HCD FTMS 0 0 0 14841 507922.75 0.9795912561799545 2 -0.05570220947265625 4 Oxidation (M) _NSPRM(Oxidation (M))DLTL_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant 45.69961567697781 0.039180348357221985 1 D{I|L}T{I|L} 4 -1 50.865 0 0 4.7917 0 0 601.2648401402063 0 601.2648401402063 0 30.062645746560847 0 0 0 1.1549471895720984 0 1.0387254899964358 0 D{I|L}T{I|L} 4.7917 + + 319 NaN NaN 209984.7 NaN 11693 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14846 64.873 NaN 657860 35 0 56686 0.261 + 32112 VYSFGFERL 9 100 559.287407210511 1116.560261487822 2 559.290771484375 MULTI HCD FTMS 0 0 0 14841 193889.515625 0.14320792621918663 -6 0.15692138671875 5 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 80.6760300276096 0.005633624786464751 1 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L} 9 0 + 87.476 0 0 7.8344 7.8344 94.57 0 0 0 40.030586141042534 7.147642715192504 7.147642715192504 23.455612550363796 0 1.8737125054200234 1.6989700043360187 0.7134679910804405 0 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L};VY[YQ]{M(Oxidation (M))|F}ER{I|L};[YV]{M(Oxidation (M))|F}[YQ]ER{I|L};V[DN][PA]G{I|L}WV{M(Oxidation (M))|F};[PS]{[QV]|[N{I|L}]|[RA]|[KV]}V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SP{M(Oxidation (M))|F};[PS][NG]{I|L}[W{I|L}]SP{M(Oxidation (M))|F};V[DN][QP]{I|L}WV{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[VA]|[{I|L}G]}[QP]SP{M(Oxidation (M))|F};[PS]K[TP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SP{M(Oxidation (M))|F};[PS]{[QV]|[N{I|L}]|[RA]|[KV]}G[W{I|L}]SP{M(Oxidation (M))|F} 7.8344;5.7337;3.3205;3.2329;2.7436;2.7436;2.6478;2.465;2.414;2.3163 +;-;-;-;-;-;-;-;-;- + 2977 + NaN NaN 199936.6 NaN 11694 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14847 64.876 NaN 181990 35 0 26146 0.261 -1 TAMDVVYAL 9 51 499.7466801642808 997.4788073953616 2 499.7462158203125 MULTI HCD FTMS 0 0 0 14841 82865.5703125 0.10391517338879451 22 -0.6024627685546875 6 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 26.88365393820708 0.12808753336095696 1 GVYA{I|L} 5 -1 45.745 0 0 4.5861 0 0 476.20396620918126 0 476.20396620918126 0 28.75569708000178 0 0 0 1.3807196863200843 0 0 0 GVYA{I|L} 4.5861 - 40 NaN NaN 119154.3 NaN 11695 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14848 64.879 NaN 163750 35 0 15583 0.261 + 11747 KDMQEYFDF 9 48 611.7574396651034 1221.5003263970068 2 611.7579956054688 MULTI HCD FTMS 0 0 0 14841 25536.43359375 0.11968469630607462 -10 0.26819610595703125 7 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 12.240655878213236 0.2545997876781172 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.7811 0 0 680.2837391584 0 680.2837391584 0 33.738350322034236 0 0 0 1.4247425010840047 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7811 - 51 NaN NaN 126659.8 NaN 11696 3150 14841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14850 64.884 NaN 1295400 35 0 126920 0.327 -1 0 79 604.7680411660131 1207.521529398826 2 604.7685546875 MULTI HCD FTMS 0 0 0 14849 605126.5 0.18987967753560717 -9 0.2321014404296875 1 NaN NaN 1 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 78.299 0 0 6.4843 0 0 291.1581288068375 0 291.1581288068375 0 44.29658317768413 0 0 0 2.6307196863200843 0 0.28872548999643577 1.1549471895720984 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.4843 - 2194 NaN NaN 278009 NaN 11697 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14851 64.889 NaN 1661300 35 0 370390 0.261 + 24694 RYLTVAAVF 9 73 520.3002137463006 1038.5858745594012 2 520.3004760742188 MULTI HCD FTMS 0 0 0 14849 399212.5 0.017024492496664292 38 -1.04058837890625 2 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 34.40172386719151 0.0910440009062557 1 AAV{M(Oxidation (M))|F} 4 5 49.553 0 0 4.7712 0 0 632.3657459382305 0 632.3657459382305 0 44.06804392152253 0 0 0 1.7614393726401687 0 0 0 + AAV{M(Oxidation (M))|F} 4.7712 + + 92 NaN NaN 336965.4 NaN 11698 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14852 64.892 NaN 1083300 35 0 417530 0.263 -1 0 53 406.21659614654493 1215.6279590398349 3 406.216796875 MULTI HCD FTMS 0 0 0 14849 216517.640625 0.38044682936471985 3 -0.07904052734375 3 NaN NaN 1 {I|L}R{I|L}Y{M(Oxidation (M))|F} 5 -1 57.959 0 0 4.7678 0 0 505.21618899287324 0 505.21618899287324 0 57.95880017344075 0 0 0 2 0 0 0 {I|L}R{I|L}Y{M(Oxidation (M))|F} 4.7678 - 41 + NaN NaN 239175 NaN 11699 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14853 64.896 NaN 858140 35 0 101550 0.261 + 6515 FPISEETIKL 10 87 588.8291292699886 1175.643705606777 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14849 361376.625 0.16908996668749623 -5 0.12078094482421875 4 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 124.953037156858 2.971737173510385E-05 1 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 108.99 0 0 9.271 9.271 96.075 0 0 0 61.25876757090721 1.3586966463999062 1.3586966463999062 18.361636072835083 0 3.159379381312206 0 1.3001648626366045 0.3252574989159953 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L} 9.271;7.7092;7.0278 +;+;- + 1492 + NaN NaN 227060.2 NaN 11700 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14854 64.899 NaN 428330 35 0 45448 0.261 + -1 EPMQIILSM 9 74 539.2675119431769 NaN 0 539.2789306640625 PEAK HCD FTMS 0 0 0 14849 13800.8701171875 0.21878107648142103 1 -0.029541015625 5 Oxidation (M) _EPMQIILSM(Oxidation (M))_ REV__ENSG00000136425|ENST00000258930|CIB2;REV__nc|ENSG00000136425|O75838-2|CIB2;REV__nc|ENSG00000136425|O75838-3|CIB2 16.942295170755138 0.2079222001251384 1 S{I|L}{I|L}E 4 -1 25.31 0 0 2.3511 0 0 165.02242054033815 466.22895227603755 631.2513728163757 0 0 0 0 0 0 0 0.6382104921644451 0 S{I|L}{I|L}E 2.3511 - 86 + NaN NaN 149248.2 NaN 11701 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14855 64.902 NaN 454810 35 0 71372 0.261 + 17348 LYPYLNEKL 9 81 576.8183030673202 1151.6220532014404 2 576.818115234375 MULTI HCD FTMS 0 0 0 14849 86022.171875 0.2884839777555695 -2 0.0556182861328125 6 Unmodified _LYPYLNEKL_ REV__ENSG00000136631|ENST00000644510|VPS45;REV__nc|ENSG00000136631|Q9NRW7-2|VPS45 51.629811660486645 0.02929079705179888 1 {I|L}YST[W{I|L}]EK{I|L} 9 -1 + 80.727 0 0 7.0099 7.0099 90.729 0 0 0 64.69659678281481 8.620280792130544 8.620280792130544 9.802046884880937 0 2.2856668758921828 2 1.1549471895720984 0 {I|L}YST[W{I|L}]EK{I|L};[Y{I|L}]ST[W{I|L}]EK{I|L};[Y{I|L}]S[VP]K{[DA]|[EG]}{M(Oxidation (M))|F}{I|L};[Y{I|L}]S[VP]KT[TP]{M(Oxidation (M))|F};[Y{I|L}]S[VP]K{[DA]|[EG]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}T[W{I|L}]EK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[VP]K{[DA]|[EG]}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[VP]KT[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[VP]{I|L}KT[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[VP]K{[DA]|[EG]}{I|L}{M(Oxidation (M))|F} 7.0099;6.1587;3.9803;3.504;3.4154;3.3809;1.2025;0.72625;0.68696;0.63763 -;-;-;-;-;-;-;-;-;- 695 + NaN NaN 159662.7 NaN 11702 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14856 64.905 NaN 837610 35 0 49937 0.261 + 24416 RYKVFVDLF 9 114 593.8343134689653 1185.6540740047305 2 593.8345336914062 MULTI HCD FTMS 0 0 0 14849 89433.2890625 0.29242231387444706 -2 0.0556182861328125 7 Unmodified _RYKVFVDLF_ ENSG00000151790|ENST00000536354|TDO2 38.175570920033316 0.07371992880350783 1 [YR]KV{M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F} 9 0 + 62.145 0 0 5.2414 5.2414 84.186 0 0 0 3.2568864632742844 39.7063742723287 3.2568864632742844 5.198405410982616 0 0.5 0 0.7302046884880937 0 + + [YR]KV{M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}DV{I|L}{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}VEV{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}{I|L}DV{M(Oxidation (M))|F};[YR]KV{I|L}D{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YR]KV{I|L}DV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KV{I|L}{M(Oxidation (M))|F}DV{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}V{M(Oxidation (M))|F}VE;[YR]K{I|L}VD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2414;4.803;4.2447;3.8063;3.3664;3.2291;2.6396;2.6047;2.4078;2.3508 +;-;-;-;-;-;-;-;-;- + 1399 NaN NaN 223036 NaN 11703 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14857 64.909 NaN 322840 35 0 41330 0.264 + 19588 NTFDFIKVLR 10 55 418.23941596754236 1251.696418502827 3 418.23944091796875 MULTI HCD FTMS 0 0 0 14849 83715.9296875 0.7607634869501168 -1 0.02616119384765625 8 Unmodified _NTFDFIKVLR_ ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 11.631370582801994 0.4023161008015784 1 NT{M(Oxidation (M))|F}D 4 6 49.157 0 0 3.9272 0 0 0 771.4855380431833 771.4855380431833 35.17728766960431 0 0 0 0 0.5 1.5228787452803376 0 0 + NT{M(Oxidation (M))|F}D 3.9272 + + 17 + NaN NaN 130609 NaN 11704 3151 14849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14859 64.914 NaN 496280 35 0 44590 0.327 + 7037 FPYVRDFVM 9 77 595.2890978246447 1188.5636427160894 2 595.2892456054688 MULTI HCD FTMS 0 0 0 14858 251753.984375 0.6286728415991917 7 -0.19036865234375 1 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 70.33199760932243 0.0089807860198535 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 82.15 0 0 6.9117 6.9117 92.316 0 0 0 17.430380486862944 10 10 17.430380486862944 0 2.305462187404089 2 0 0.3054621874040891 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVR[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVKN{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKN{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KN{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[R{M(Oxidation (M))|F}]AYPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVKGG{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKGG{M(Oxidation (M))|F} 6.9117;5.4452;5.0579;5.0434;5.0241;4.8985;4.8342;4.6389;4.2686;4.2494 +;-;-;-;-;-;-;-;-;- + 1032 NaN NaN 171794.1 NaN 11705 3152 14858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14860 64.918 NaN 298640 35 0 24916 0.261 + 27081 SYMGHFDLL 9 70 549.7497688734081 1097.4849848136162 2 549.7496948242188 MULTI HCD FTMS 0 0 0 14858 110820.3984375 0.010698771338816764 166 -4.4199371337890625 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 64.23631603340823 0.01165516075559909 1 D{I|L}{I|L} 3 6 31.484 0 0 2.8688 0 0 738.279588767775 0 738.279588767775 0 3.789850105233299 0 0 0 0.4247425010840047 0 0.7059771852360797 0 + D{I|L}{I|L} 2.8688 + + 444 NaN NaN 128809.7 NaN 11706 3152 14858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14861 64.922 NaN 122520 35 0 14166 0.261 + 5145 FFAGFLLF 8 36 481.2618441267151 NaN 0 481.2615661621094 PEAK HCD FTMS 0 0 0 14858 48799.63671875 0.6981679326345194 -4 0.1079559326171875 3 Unmodified _FFAGFLLF_ REV__ENSG00000214814|ENST00000522917|FER1L6 17.086550045450526 0.386433553673079 1 {I|L} 1 -1 9.2917 0 0 0.96738 0 0 165.0807102032863 679.3193453424436 844.4000555457299 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 0.96738 + + 6 + NaN NaN 99029.2 NaN 11707 3152 14858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14862 64.925 NaN 129710 35 0 12269 0.261 + 11071 IYGPIESTI 9 51 496.76857928615203 991.5226056391041 2 496.7686462402344 MULTI HCD FTMS 0 0 0 14858 66687.4921875 1 0 0 4 Unmodified _IYGPIESTI_ ENSG00000163751|ENST00000296046|CPA3 15.847184025352803 0.2234401846867398 1 E{[MG]|[TS]}{I|L} 4 5 26.198 0 0 2.6422 0 0 543.3061359505729 0 543.3061359505729 0 20.511525224473814 0 0 0 1 0 0 0 + E{[MG]|[TS]}{I|L} 2.6422 + + 20 NaN NaN 106171.7 NaN 11708 3152 14858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14864 64.93 NaN 558090 35 0 112680 0.327 -1 0 73 467.23323308066614 932.4519132281323 2 467.2334899902344 MULTI HCD FTMS 0 0 0 14863 570970.8125 1 0 0 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.4048 0 0 767.3730538304745 0 767.3730538304745 0 2.129843661361406 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4048 - 60 + NaN NaN 160950.5 NaN 11709 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14865 64.935 NaN 1465600 35 0 231030 0.261 + 32113 VYSFGFERL 9 91 559.287407210511 1116.560261487822 2 559.2879028320312 MULTI HCD FTMS 0 0 0 14863 696686.3125 0.5145765706660664 -3 0.07225799560546875 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 107.09958533191995 0.0034159042678574016 1 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L} 9 0 + 97.322 0 0 8.7162 8.7162 96.013 0 0 0 55.11968227170824 8.384767769392738 8.384767769392738 23.6672573444214 0 2.443672679568534 1.6989700043360187 0.7302046884880937 0 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L};[YV]S{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};VYSE{I|L}GR{M(Oxidation (M))|F}{M(Oxidation (M))|F};VY[YQ]{M(Oxidation (M))|F}ER{I|L};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{I|L};[YV]S{M(Oxidation (M))|F}GE[R{I|L}]{M(Oxidation (M))|F};V{[NV]|[RG]}[TP]AWSP{M(Oxidation (M))|F};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}[R{I|L}]{M(Oxidation (M))|F};[PS]N{I|L}VAWSP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L} 8.7162;6.5966;6.042;6.02;5.6781;5.0453;4.2657;4.1269;4.1199;3.9303 +;-;-;-;-;-;-;-;-;- + 4511 + NaN NaN 318394.5 NaN 11710 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14866 64.938 NaN 519450 35 0 291090 0.263 -1 0 50 427.3023969861822 852.5902410391644 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14863 327302.375 0.4106523552076321 -17 0.4618682861328125 3 NaN NaN 1 V 1 -1 1.5938 0 0 0.18694 0 0 569.4073014413113 181.0873201959594 750.4946216372707 0 0 0 0 0 0 0 0 0 V 0.18694 - 6 + NaN NaN 152055.2 NaN 11711 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14867 64.942 NaN 532810 35 0 30471 0.261 + 24417 RYKVFVDLF 9 104 593.8343134689653 1185.6540740047305 2 593.8347778320312 MULTI HCD FTMS 0 0 0 14863 305836.0625 1 0 0 4 Unmodified _RYKVFVDLF_ ENSG00000151790|ENST00000536354|TDO2 39.94969957227396 0.06557568441294001 1 [YR]KV{M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F} 9 0 + 60.576 0 0 5.1091 5.1091 83.564 0 0 0 3.65279269351241 50.44273702751334 3.65279269351241 4.291746928241125 0 0.6643943297944485 0 0.6307196863200843 0 + + [YR]KV{M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}VEV{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}DV{I|L}{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YR]KV{I|L}D{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}V[{M(Oxidation (M))|F}V]E 5.1091;4.7471;4.5249;4.163;3.8218;2.3835 +;-;-;-;-;- + 802 NaN NaN 159358.9 NaN 11712 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14868 64.945 NaN 252050 35 0 38868 0.261 -1 YNAPTDHGLCI 11 48 630.7877762463431 1259.5609995594862 2 630.7879638671875 MULTI HCD FTMS 0 0 0 14863 117927.828125 0.6852672793356902 -6 0.140655517578125 5 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 26.268140514670165 0.22820724222159966 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 79.474 0 0 6.3097 0 0 0 265.1307772272094 265.1307772272094 58.50501891384965 0 0 0 0 2.2302046884880937 2 0.3807196863200844 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.3097 - 165 + NaN NaN 118960.1 NaN 11713 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14869 64.948 NaN 203020 35 0 20312 0.261 + -1 GSQSLHIGELC 11 62 600.7877165077157 1199.5608800822313 2 600.7884521484375 MULTI HCD FTMS 0 0 0 14863 155663.21875 0.9662418250891566 7 -0.19335174560546875 6 Carbamidomethyl (C) _GSQSLHIGELC(Carbamidomethyl (C))_ REV__ENSG00000197386|ENST00000355072|HTT;REV__ENST00000510626.5_1_4:3190651-3210559:+|nuORF 15.248480904072842 0.3242218977034194 1 SVSH 4 -1 24.68 0 0 2.0575 0 0 272.1149160300493 514.2267550104124 786.3416710404617 0 0 0 0 0 0.9247425010840047 0 0 0 SVSH 2.0575 - 65 + NaN NaN 120121.6 NaN 11714 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14870 64.952 NaN 341570 35 0 40662 0.262 + 21512 PYIDRFVI 8 66 511.7881507238708 1021.5617485145416 2 511.7886047363281 MULTI HCD FTMS 0 0 0 14863 89428.109375 0.9470519375359949 -1 0.0165557861328125 7 Unmodified _PYIDRFVI_ tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1 17.11289562659939 0.4678830079548939 1 {M(Oxidation (M))|F}V{I|L} 3 5 30.005 0 0 2.9372 0 0 644.3171088603966 0 644.3171088603966 0 15.056584229283843 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}V{I|L} 2.9372 + + 97 NaN NaN 125864.9 NaN 11715 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14871 64.955 NaN 143700 35 0 10587 0.261 + -1 NYPKQGMHIM 10 48 617.789948232491 1233.565343531782 2 618.3125 MULTI HCD FTMS 0 0 0 14863 13331.5283203125 0.3485580814345325 -7 0.16687774658203125 8 Oxidation (M) _NYPKQGMHIM(Oxidation (M))_ REV__ENSG00000159885|ENST00000391960|ZNF222;REV__nc|ENSG00000159885|Q9UK12|ZNF222 9.38312468134398 0.42334543440173333 1 AMET{M(Oxidation (M))|F} 5 -1 35.573 0 0 2.8838 0 0 636.3690052716812 0 636.3690052716812 0 8.125918950875501 0 0 0 0 0 0 0 AMET{M(Oxidation (M))|F} 2.8838 - 50 NaN NaN 106533.7 NaN 11716 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14872 64.958 NaN 63088 35 0 5153.3 0.264 + 31294 VWFPGGAF 8 40 440.721457883777 NaN 0 440.5768127441406 PEAK HCD FTMS 0 0 0 14863 10238.2509765625 1 0 0 9 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.38822285293237185 1 G 1 7 3.9794 0 0 0.4525 0 0 565.2568062931416 254.12983118228752 819.3866374754291 0 0 0 0 0 0 0 0 0 + G 0.4525 + + 2 + NaN NaN 97583.4 NaN 11717 3153 14863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14874 64.963 NaN 1848600 35 0 315550 0.327 + 32114 VYSFGFERL 9 102 559.287407210511 1116.560261487822 2 559.2877807617188 MULTI HCD FTMS 0 0 0 14873 1030143.8125 0.7608702235399771 -2 0.04949951171875 1 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 107.09958533191995 0.0034159042678574016 1 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L} 9 0 + 99.932 0 0 8.95 8.95 95.906 0 0 0 51.76547226131292 9.009461452434238 9.009461452434238 19.771212547196626 0 2.579689690656103 1.6989700043360187 0.7302046884880937 0 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L};[YV]S{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{I|L};VY[YQ]{M(Oxidation (M))|F}ER{I|L};[YV]S{M(Oxidation (M))|F}GE[R{I|L}]{M(Oxidation (M))|F};VYTAW[HV]E{I|L};[YV]AYGE{M(Oxidation (M))|F}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};[DV][HV]{I|L}G{M(Oxidation (M))|F}SP{M(Oxidation (M))|F};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}[R{I|L}]{M(Oxidation (M))|F} 8.95;7.1792;6.2008;6.1992;5.3572;5.2646;5.0041;4.5129;4.4486;4.3787 +;-;-;-;-;-;-;-;-;- + 6685 + NaN NaN 368300.2 NaN 11718 3154 14873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14875 64.968 NaN 810300 35 0 39941 0.261 + 27169 SYNNFFRMF 9 103 621.2740788742191 1240.533604815238 2 621.2745361328125 MULTI HCD FTMS 0 0 0 14873 351379.8125 0.06342463091025531 26 -0.699798583984375 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 133.0521902211835 0.0004198702180815479 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.649 0 0 6.5012 6.5012 88.841 0 0 0 8.784853853988537 59.69712155814348 8.784853853988537 9.208187539523749 0 3 0 0.9194451763165201 1.5114393726401687 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}W[PA]{M(Oxidation (M))|F}NN[MT];[R{M(Oxidation (M))|F}][SG][PA]{M(Oxidation (M))|F}NN[MT];{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NN[MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NN[MT] 6.5012;5.7589;5.7589;5.5716;4.8293;4.3709;2.7331;2.1526;2.0877;2.0083 +;-;-;-;-;-;-;-;-;- + 3042 NaN NaN 210938.2 NaN 11719 3154 14873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14876 64.971 NaN 208170 35 0 33667 0.262 + 16282 LQNLIMGLF 9 45 524.7963625397092 1047.5781721462183 2 524.79638671875 MULTI HCD FTMS 0 0 0 14873 69554.359375 0.647526235191395 2 -0.0556640625 3 Unmodified _LQNLIMGLF_ ENSG00000138075|ENST00000405322|ABCG5 23.1484247019978 0.1603590852062899 1 [Q{I|L}]{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}Q{I|L}{M(Oxidation (M))|F} 9 3 [Q{I|L}]{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}Q + + 20.261 13.802 1.7939 1.9341 1.9341 58.888 0 0 0 0 2.7966776472507604 0 0 0 0.3807196863200844 0 0 0 [Q{I|L}]{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}Q{I|L}{M(Oxidation (M))|F} 1.9341 - 48 + NaN NaN 122352.1 NaN 11720 3154 14873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14877 64.975 NaN 180190 35 0 12963 0.261 + 11852 KFAEEFYSF 9 68 584.2716695917059 NaN 0 584.2721557617188 PEAK HCD FTMS 0 0 0 14873 59721.5234375 0.7450570140975317 2 -0.0556640625 4 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 47.594388314883695 0.053919811388395404 1 SY{M(Oxidation (M))|F}E 4 8 35.372 0 0 3.0322 0 0 165.08075027378248 472.2206209772094 637.3013712509919 0 0 0 0 0 1.872363747448347 0 0.6382104921644451 0 SY{M(Oxidation (M))|F}E 3.0322 - 51 + NaN NaN 128636 NaN 11721 3154 14873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14878 64.978 NaN 260200 35 0 50480 0.264 + 31757 VYLPGHFFHL 10 55 410.5533479704287 1228.6382145114862 3 410.5537414550781 MULTI HCD FTMS 0 0 0 14873 59126.76171875 0.7727130855184527 1 -0.02289581298828125 5 Unmodified _VYLPGHFFHL_ ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-2|GSAP;nc|ENSG00000186088|A4D1B5-3|GSAP 15.248480904072842 0.3684828712757339 1 VY{I|L} 3 7 49.297 0 0 4.0123 0 0 0 850.4005116364407 850.4005116364407 34.69273760456403 0 0 0 0 0.6109243748081782 1.6989700043360187 0 0 + VY{I|L} 4.0123 + + 30 + NaN NaN 120610.9 NaN 11722 3154 14873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14879 64.981 NaN 144190 35 0 12135 0.261 -1 TAIGIGDMF 9 57 470.7256501462239 939.4367473592479 2 471.2176818847656 MULTI HCD FTMS 0 0 0 14873 9227.828125 0.5192162799673303 -2 0.04949951171875 6 Oxidation (M) _TAIGIGDM(Oxidation (M))F_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F} 1 -1 17.857 0 0 1.9008 0 0 774.3578421852229 0 774.3578421852229 0 1.403018563800984 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F} 1.9008 + + 16 + NaN NaN 99799.4 NaN 11723 3154 14873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14881 64.986 NaN 4599400 35 0 706330 0.327 + 5162 FFDAELSQM 9 100 552.2390895993532 1102.4636262655063 2 552.2398071289062 MULTI HCD FTMS 0 0 0 14880 2311006 0.6722132111659531 -5 0.1280975341796875 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 QDAE{I|L}SQ{M(Oxidation (M))|F} 8 2 99.665 0 0 9.0402 0 0 166.064347556325 0 166.064347556325 0 59.166316157790675 0 0 0 3.1747425010840047 0 1.7614393726401687 0.9604093769761876 QDAE{I|L}SQ{M(Oxidation (M))|F} 9.0402 - 3814 + NaN NaN 787478.2 NaN 11724 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14882 64.991 NaN 703250 35 0 159890 0.261 + 8376 GYMEGYYTF 9 83 573.7262469290902 1145.4379409249802 2 573.726318359375 MULTI HCD FTMS 0 0 0 14880 361698.71875 0.9172665354077358 2 -0.062286376953125 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 147.8311659463005 1.1118996804784084E-05 1 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 104.63 0 0 9.1345 9.1345 94.106 0 0 0 10 16.478174818886373 10 10 0 2.7302046884880937 1.3979400086720375 1.350576203518622 0 [YT]CEGYYT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EGYYT{M(Oxidation (M))|F};[YT]C[KP]GDDT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}[KP]GDDT{M(Oxidation (M))|F};{[NV]|[RG]}{[ES]|[DT]|[{I|L}C]}YGDDT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[YT]{M(Oxidation (M))|F}[YG]E{M(Oxidation (M))|F}[YG];[YG]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}Y{[YC]|[HE]} 9.1345;8.2615;5.9599;5.299;4.7545;4.5846;4.2177;3.2255;2.1442;2.134 -;+;-;-;-;-;-;-;-;- + 533 NaN NaN 204850 NaN 11725 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14883 64.994 NaN 725990 35 0 106170 0.261 + 20138 NYISGIQTI 9 82 504.771584415814 1007.528615898428 2 504.77178955078125 MULTI HCD FTMS 0 0 0 14880 227015.109375 0.12433171019139305 11 -0.32068634033203125 3 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 117.76058876431921 0.001675465467887476 1 [YN]{I|L}SAVQT{I|L} 9 2 + 78.29 0 0 7.7705 7.7705 91.086 0 0 0 19.140440438841566 50.867261009623434 19.140440438841566 9.208187539523749 0 2.278659694992122 1.3979400086720375 0.7059771852360797 0.6382104921644451 [YN]{I|L}SAVQT{I|L};[YN]{I|L}SAV[AG]T{I|L};[{I|L}T]E[KQ]{I|L}YN;[{I|L}T]Q{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]{[TV]|[{I|L}S]}AN{I|L}YN;[{I|L}T]E[KQ][YN]{I|L};[{I|L}T]Q{[VA]|[{I|L}G]}S[YN]{I|L} 7.7705;6.8566;0.94245;0.90927;0.61489;0.056833;0.023659 -;-;-;-;-;-;- 386 NaN NaN 207671.5 NaN 11726 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14884 64.997 NaN 283430 35 0 49549 0.261 + 268 AFLKVSSVF 9 63 499.2894335142177 996.5643140952354 2 499.2897033691406 MULTI HCD FTMS 0 0 0 14880 110099.984375 0.6136970006495449 -1 0.02289581298828125 4 Unmodified _AFLKVSSVF_ ENSG00000100401|ENST00000356244|RANGAP1 63.960520009940105 0.0120409805053046 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}KVSSV{M(Oxidation (M))|F} 9 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 48.039 5.2288 2.3974 4.8205 4.8205 61.283 0 0 0 0 34.85155235696066 0 0 0 2.6549471895720984 0 0 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}KVSSV{M(Oxidation (M))|F} 4.8205 + + 125 + NaN NaN 126810.8 NaN 11727 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14885 65.001 NaN 211230 35 0 21151 0.261 -1 0 66 526.2815928167875 1050.5486327003748 2 526.2818603515625 MULTI HCD FTMS 0 0 0 14880 52985.7578125 0.014164273770230617 64 -1.7180938720703125 5 NaN NaN 1 VWS{I|L} 4 -1 37.423 0 0 3.5622 0 0 547.27446181465 0 547.27446181465 0 20.43305028184122 0 0 0 1 0 0 0 VWS{I|L} 3.5622 - 124 NaN NaN 129875.1 NaN 11728 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14886 65.004 NaN 153090 35 0 15148 0.261 + 16923 LYGPSSVSF 9 46 478.7396462188789 955.4647395045578 2 478.7398681640625 MULTI HCD FTMS 0 0 0 14880 77511.9296875 0.6571275744657007 2 -0.062286376953125 6 Unmodified _LYGPSSVSF_ ENSG00000149257|ENST00000358171|SERPINH1 52.268347100219714 0.028397529699942435 1 SVS{M(Oxidation (M))|F} 4 5 57.18 0 0 5.9846 0 0 517.2537708966812 0 517.2537708966812 0 50.19077524932108 0 0 0 1.8252574989159953 0 0.8494850021680094 0 + SVS{M(Oxidation (M))|F} 5.9846 + + 92 NaN NaN 108295.1 NaN 11729 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14887 65.007 NaN 190640 35 0 41173 0.261 + 16534 LTPASEPEAL 10 55 514.2690833388377 NaN 0 514.2693481445312 PEAK HCD FTMS 0 0 0 14880 27759.81640625 0.5734813786542979 1 -0.03276824951171875 7 Unmodified _LTPASEPEAL_ REV__ENSG00000196872|ENST00000397899|CRACDL 9.38312468134398 0.33215363477037435 1 AE 2 -1 17.078 0 0 1.6637 0 0 131.09772840123838 692.3299044244749 823.4276328257133 0 0 0 0 0 0.8494850021680094 0 0 0 AE 1.6637 - 20 + NaN NaN 126287.6 NaN 11730 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14888 65.011 NaN 163000 35 0 17775 0.261 -1 TAIGIGDMF 9 50 470.7256501462239 939.4367473592479 2 471.2178039550781 MULTI HCD FTMS 0 0 0 14880 7060.5693359375 0.3972725212691229 -1 0.02289581298828125 8 Oxidation (M) _TAIGIGDM(Oxidation (M))F_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 14.838274106304384 0.23215694253501695 1 EA 2 -1 11.454 0 0 1.2192 0 0 0 736.3394869440061 736.3394869440061 5.969100130080562 0 0 0 0 0 0 0 0 EA 1.2192 - 10 + NaN NaN 105371.8 NaN 11731 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14889 65.014 NaN 68961 35 0 4802.3 0.261 + 10873 IVSEYFVL 8 39 485.2662139731126 NaN 0 485.2664489746094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _IVSEYFVL_ CON__Q3KUS7 5.230669730166228 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88503.5 NaN 11732 3155 14880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14891 65.019 NaN 1285000 35 0 121160 0.327 + 2894 DYSPYFKTI 9 107 567.2791460627044 1132.5437391922087 2 567.2791137695312 MULTI HCD FTMS 0 0 0 14890 633406 0.02568958274169576 72 -1.9233856201171875 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 78.06048673739656 0.006479972202176041 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 74.483 0 0 6.5766 6.5766 91.293 0 0 0 9.731450300551657 9.986512420283233 9.731450300551657 15.182576214910867 0 2.2376954943324545 1.6989700043360187 1.305462187404089 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};[YT]GE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}[{I|L}T]K;[YT]GE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K 6.5766;5.236;5.2349;5.1705;4.8596;4.7686;4.6656;4.5366;4.4239;4.1025 +;-;-;-;-;-;-;-;-;- + 2055 NaN NaN 285503.9 NaN 11733 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14892 65.023 NaN 544590 35 0 62270 0.261 + -1 YLCLFWKPM 9 84 608.8012414462664 NaN 0 608.8217163085938 PEAK HCD FTMS 0 0 0 14890 26500.88671875 0.9982465056655656 1 -0.02951812744140625 2 Oxidation (M) _YLCLFWKPM(Oxidation (M))_ REV__ENST00000336415.8_1_1:243349322-243349403:-|nuORF 23.1484247019978 0.16626532474190622 1 Y{I|L}[R{I|L}]DN 6 -1 27.797 0 0 2.2867 0 0 165.03684435009046 273.12424646549067 438.16109081558113 0 0 0 0 0 0.3252574989159953 0 0.3054621874040891 1.360924374808178 Y{I|L}[R{I|L}]DN 2.2867 - 146 + NaN NaN 162331.3 NaN 11734 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14893 65.027 NaN 859870 35 0 40192 0.261 + 27170 SYNNFFRMF 9 105 621.2740788742191 1240.533604815238 2 621.2747192382812 MULTI HCD FTMS 0 0 0 14890 439850.5 0.079393734716024 28 -0.7619705200195312 3 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 118.0683919894846 0.0016252157255221692 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 67.528 0 0 5.4435 0 0 63.99795025263354 0 63.99795025263354 0 41.20726778770815 0 0 0 2.31295299324845 0 0 0.3252574989159953 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4435 - 2805 + NaN NaN 208502 NaN 11735 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14894 65.03 NaN 564780 35 0 53458 0.262 -1 NSPRMDLTL 9 93 531.7661074803768 1061.5176620275536 2 531.7665405273438 MULTI HCD FTMS 0 0 0 14890 257393.328125 0.496414570188691 8 -0.22270965576171875 4 Oxidation (M) _NSPRM(Oxidation (M))DLTL_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant 26.268140514670165 0.13340543277302316 1 D{I|L}T{I|L} 4 -1 36.146 0 0 3.4052 0 0 601.2635975568375 0 601.2635975568375 0 18.241537945111187 0 0 0 0.8807196863200843 0 0.3807196863200844 0 D{I|L}T{I|L} 3.4052 + + 431 NaN NaN 162437 NaN 11736 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14895 65.034 NaN 636160 35 0 81277 0.261 + 20139 NYISGIQTI 9 81 504.771584415814 1007.528615898428 2 504.7717590332031 MULTI HCD FTMS 0 0 0 14890 287388 0.15739675489819616 12 -0.3402557373046875 5 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 96.93554129104106 0.004344229100022454 1 [YN]{I|L}SAVQT{I|L} 9 2 + 72.973 0 0 7.2428 7.2428 90.252 0 0 0 11.649605070435456 41.686296826174996 11.649605070435456 9.208187539523749 0 2.291447825603967 1.3979400086720375 0 0.6747425010840047 [YN]{I|L}SAVQT{I|L};[YN]{I|L}SAV[AG]T{I|L};[YN]{I|L}S[VS]{[NV]|[RG]}{I|L};[YN]{I|L}S[VS][{I|L}V]N;[{I|L}T]Q{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]E[KQ]{I|L}YN;[{I|L}T][AG]{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T][K{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YN 7.2428;6.3288;3.1541;2.8554;1.5003;1.4549;0.58638;0.11283 -;-;-;-;-;-;-;- 339 NaN NaN 177666.6 NaN 11737 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14896 65.037 NaN 383980 35 0 25873 0.261 + 14073 KYVTVYNLI 9 78 556.8210122242411 1111.6274715152822 2 556.8214721679688 MULTI HCD FTMS 0 0 0 14890 190609.453125 0.2844617623759587 8 -0.22270965576171875 6 Unmodified _KYVTVYNLI_ ENSG00000138592|ENST00000307179|USP8;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;USP8-MYEF2|1|fusion 53.40400417844725 0.026808823219830042 1 [YK]VTVYN{I|L}{I|L} 9 0 + 53.241 0 0 4.7895 4.7895 84.831 0 0 0 3.2568864632742844 26.329628067253168 3.2568864632742844 8.57840941039747 0 1.8098943791441968 0 0.3252574989159953 0.3807196863200844 + + [YK]VTVYN{I|L}{I|L};[YK]VTVNY{I|L}{I|L};[YK]VTVYGG{I|L}{I|L};[Y{I|L}]DK[KG]Y{I|L}{I|L};[YK]V[YN]{I|L}S{I|L}{I|L};[YK]VTVGGY{I|L}{I|L};[YK]VE[KG]Y{I|L}{I|L};[YK]D{I|L}[KG]Y{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YK[KG]Y{I|L}{I|L} 4.7895;4.0178;3.9611;3.4979;3.4349;3.1894;2.1933;1.1112;0.93855 +;-;-;-;-;-;-;-;- + 540 NaN NaN 141655 NaN 11738 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14897 65.04 NaN 1441900 35 0 399070 0.262 + -1 GFIICWLIMAK 11 82 456.5784833434032 1366.7136206304097 3 456.57904052734375 MULTI HCD FTMS 0 0 0 14890 322235.78125 0.11871634475679345 -7 0.1903228759765625 7 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 10.315234532428624 0.3672054350828177 1 {I|L}ND[YQ]{I|L}{I|L}GE 9 -1 75.768 0 0 5.5438 0 0 303.1699944717039 0 303.1699944717039 0 66.81540340012745 0 0 0 2.1861818737241734 0 0.3494850021680094 0.7302046884880937 {I|L}ND[YQ]{I|L}{I|L}GE 5.5438 - 274 NaN NaN 296534.2 NaN 11739 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14898 65.044 NaN 248710 35 0 23264 0.261 -1 0 49 596.9665516079718 1787.8778254241154 3 597.3001708984375 MULTI HCD FTMS 0 0 0 14890 62486.80078125 0.12987031301329907 24 -0.644134521484375 8 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.4525 0 0 1475.7318195726598 0 1475.7318195726598 0 18.979400086720375 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4525 - 16 NaN NaN 115327.7 NaN 11740 3156 14890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14900 65.048 NaN 3293700 35 0 354070 0.327 -1 0 110 604.7680411660131 1207.521529398826 2 604.7685546875 MULTI HCD FTMS 0 0 0 14899 2618459.75 0.8216336467994155 -3 0.08518218994140625 1 NaN NaN 1 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 89.069 0 0 7.3762 0 0 291.15855605293126 0 291.15855605293126 0 62.19585219288946 0 0 0 2.610924374808178 0 1.4863467363607779 1.2302046884880937 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.3762 - 10191 NaN NaN 586450.7 NaN 11741 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14901 65.053 NaN 2267500 35 0 251490 0.261 + 6516 FPISEETIKL 10 101 588.8291292699886 1175.643705606777 2 588.8295288085938 MULTI HCD FTMS 0 0 0 14899 1927079.375 0.9016902720891565 1 -0.0262298583984375 2 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 159.1008501968603 9.836314158329496E-11 1 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 109.16 0 0 9.2853 9.2853 90.696 0 0 0 18.47750326371255 1.1607435312808434 1.1607435312808434 4.99491555391522 0 3.1791746928241125 0 1.316901560044258 0.3054621874040891 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};{M(Oxidation (M))|F}{I|L}PSEET{I|L}K{I|L};{I|L}{M(Oxidation (M))|F}PSEET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SETE{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}EET{I|L}K{I|L};[{I|L}P]SEE{M(Oxidation (M))|F}T{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}STEE{I|L}K{I|L};[{I|L}P]SE{M(Oxidation (M))|F}ET{I|L}K{I|L} 9.2853;8.8604;8.465;8.2089;7.9697;7.6279;7.534;7.0971;6.9466;6.9383 +;+;-;-;-;-;-;-;-;- + 7016 + NaN NaN 435125.2 NaN 11742 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14902 65.056 NaN 436160 35 0 155940 0.264 -1 0 57 406.21659614654493 1215.6279590398349 3 406.2168273925781 MULTI HCD FTMS 0 0 0 14899 141917.328125 0.24936535129985476 9 -0.25839996337890625 3 NaN NaN 1 {I|L}R{I|L}Y{M(Oxidation (M))|F} 5 -1 54.949 0 0 4.5202 0 0 505.2174437458029 0 505.2174437458029 0 54.94850021680094 0 0 0 2 0 0 0 {I|L}R{I|L}Y{M(Oxidation (M))|F} 4.5202 - 25 + NaN NaN 149022.2 NaN 11743 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14903 65.06 NaN 574850 35 0 32456 0.261 + 32175 VYSRTFTWL 9 77 586.8083791463571 1171.602205359514 2 586.808837890625 MULTI HCD FTMS 0 0 0 14899 201041.65625 0.13400839545282411 15 -0.412078857421875 4 Unmodified _VYSRTFTWL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 53.40400417844725 0.026808823219830042 1 [YV]SRT{M(Oxidation (M))|F}TW{I|L} 9 0 + 69.808 0 0 5.9584 5.9584 90.605 0 0 0 17.473797812536915 16.478174818886373 16.478174818886373 17.473797812536915 0 1.5484550065040281 1.5228787452803376 0.8494850021680094 0 + + [YV]SRT{M(Oxidation (M))|F}TW{I|L};[YV]R{M(Oxidation (M))|F}TSTW{I|L};[YV]SRTWT{M(Oxidation (M))|F}{I|L};[YV]{[HG]|PP}{I|L}[PS]TW{I|L};[YV][VG]{M(Oxidation (M))|F}[RD]G{M(Oxidation (M))|F}{I|L};[YN][RV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}{I|L};[YV]SR{[WS]|[C(Carbamidomethyl (C)){I|L}]}YV{I|L};[YV]SR{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{I|L};[YV]RN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}{I|L} 5.9584;4.4669;4.3569;3.8518;3.2956;2.9108;2.8469;2.7794;2.4964 +;-;-;-;-;-;-;-;- + 1561 NaN NaN 183098.1 NaN 11744 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14904 65.063 NaN 667610 35 0 28634 0.261 + 22710 QYASAFHFL 9 84 542.2668609850439 1082.5191690368877 2 542.2673950195312 MULTI HCD FTMS 0 0 0 14899 150193.265625 0.18332480062762876 9 -0.25839996337890625 5 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 60.38955033654506 0.017036522530421875 1 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 8 6 48.075 0 0 4.441 0 0 165.07910353828282 0 165.07910353828282 0 25.379304062195928 0 0 0 0.28872548999643577 0 0.5 0 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 4.441 - 699 NaN NaN 201863.4 NaN 11745 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14905 65.066 NaN 217430 35 0 29273 0.261 + 17349 LYPYLNEKL 9 70 576.8183030673202 1151.6220532014404 2 576.8186645507812 MULTI HCD FTMS 0 0 0 14899 116866.78125 0.3919244676997991 4 -0.10474395751953125 6 Unmodified _LYPYLNEKL_ REV__ENSG00000136631|ENST00000644510|VPS45;REV__nc|ENSG00000136631|Q9NRW7-2|VPS45 31.26834338654808 0.10542797264966089 1 {I|L}YST[W{I|L}]EK{I|L} 9 -1 + 74.292 0 0 6.4511 6.4511 93.106 0 0 0 59.10273743745762 8.273780925378276 8.273780925378276 38.36696871556164 0 1.9163865622122673 2 0.8807196863200843 0 {I|L}YST[W{I|L}]EK{I|L};[Y{I|L}]S[VP]K{[DA]|[EG]}{M(Oxidation (M))|F}{I|L} 6.4511;3.1195 -;- 346 + NaN NaN 116810.6 NaN 11746 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14906 65.07 NaN 319590 35 0 24562 0.261 + 11748 KDMQEYFDF 9 62 611.7574396651034 1221.5003263970068 2 611.7576293945312 MULTI HCD FTMS 0 0 0 14899 135125.90625 0.6333109513214309 -3 0.08518218994140625 7 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 22.736283301280096 0.1639198954644489 1 {M(Oxidation (M))|F}DRN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 56.458 0 0 4.622 0 0 262.09529311347814 0 262.09529311347814 0 37.94608556569443 0 0 0 1.5 0 0 0.4247425010840047 {M(Oxidation (M))|F}DRN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.622 - 349 NaN NaN 128289.3 NaN 11747 3157 14899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14908 65.075 NaN 1553600 35 0 455090 0.327 + 24695 RYLTVAAVF 9 79 520.3002137463006 1038.5858745594012 2 520.3004760742188 MULTI HCD FTMS 0 0 0 14907 496858.28125 0.021188615288965505 45 -1.241912841796875 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 36.12702656103203 0.08312389501731911 1 AAV{M(Oxidation (M))|F} 4 5 48.245 0 0 4.6453 0 0 632.3651488337235 0 632.3651488337235 0 41.25569708000178 0 0 0 1.6307196863200843 0 0 0 + AAV{M(Oxidation (M))|F} 4.6453 + + 98 NaN NaN 318779.5 NaN 11748 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14909 65.079 NaN 556370 35 0 307900 0.262 -1 0 55 427.3023969861822 852.5902410391644 2 427.302734375 MULTI HCD FTMS 0 0 0 14907 254861.15625 0.31976344218401354 -12 0.3112335205078125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.5828 0 0 687.5106797372098 0 687.5106797372098 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5828 - 4 + NaN NaN 169386.5 NaN 11749 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14910 65.083 NaN 920560 35 0 102930 0.261 + 11737 KDHCCMLEF 9 97 563.2301772692612 1124.4458016053222 2 563.23046875 MULTI HCD FTMS 0 0 0 14907 230009.96875 0.721263029698678 2 -0.0489959716796875 3 Unmodified _KDHCCMLEF_ ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 21.74664581756881 0.17247014374749275 1 S{I|L}EAD{M(Oxidation (M))|F}E 7 7 55.315 0 0 4.9193 0 0 315.08641249824376 0 315.08641249824376 0 25.58635421423829 0 0 0 2.0158715643802765 0 0.3252574989159953 0 S{I|L}EAD{M(Oxidation (M))|F}E 4.9193 - 810 NaN NaN 223322.1 NaN 11750 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14911 65.086 NaN 750570 35 0 111190 0.261 + 9094 HPFHILIAL 9 82 530.818618658761 1059.622684384322 2 530.8187866210938 MULTI HCD FTMS 0 0 0 14907 159760.15625 0.3341134045527377 -2 0.05574798583984375 4 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 45.7499826716795 0.03894913563566938 1 G{[SA]|[TG]}{I|L}{I|L}A{I|L} 7 5 51.999 0 0 4.9074 0 0 416.2549000470719 0 416.2549000470719 0 25.34395415117551 0 0 0 1.1549471895720984 0 1.3979400086720375 0 G{[SA]|[TG]}{I|L}{I|L}A{I|L} 4.9074 - 293 NaN NaN 216735.5 NaN 11751 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14912 65.089 NaN 559240 35 0 23125 0.261 + 22711 QYASAFHFL 9 86 542.2668609850439 1082.5191690368877 2 542.266845703125 MULTI HCD FTMS 0 0 0 14907 173145.359375 0.21133995825267884 10 -0.28450775146484375 5 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 50.855029805455786 0.030374663808198754 1 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 8 6 47.802 0 0 4.4158 0 0 165.07957656074376 0 165.07957656074376 0 22.09614293199344 0 0 0 0.2614393726401688 0 0.5 0 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 4.4158 - 852 NaN NaN 176653.1 NaN 11752 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14913 65.093 NaN 351910 35 0 36057 0.261 + -1 WCTQLLVRFA 10 59 647.3431912762923 1292.6718296193844 2 647.34423828125 MULTI HCD FTMS 0 0 0 14907 123478.40625 0.7417807879720387 -1 0.0262298583984375 6 Carbamidomethyl (C) _WC(Carbamidomethyl (C))TQLLVRFA_ REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF 24.990960013464015 0.27735500881591096 1 {[ES]|[DT]|[{I|L}C]}QSGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR 12 -1 + 90.416 0 0 6.9945 6.9945 88.868 0 0 0 65.81546893236258 2.1421059732441705 2.1421059732441705 9.098233696509112 0 3.309894379144197 0 0.3494850021680094 0 {[ES]|[DT]|[{I|L}C]}QSGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}[AG]SGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}QS{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}Q{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}[AG]S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}[AG]{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR 6.9945;6.2907;5.0696;4.6828;4.3634;3.9766 -;-;-;-;-;- 205 + NaN NaN 140587.9 NaN 11753 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14914 65.096 NaN 290330 35 0 23874 0.261 + 7038 FPYVRDFVM 9 69 595.2890978246447 1188.5636427160894 2 595.2891845703125 MULTI HCD FTMS 0 0 0 14907 85846.28125 0.21437287559974058 13 -0.3596649169921875 7 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 53.40400417844725 0.026808823219830042 1 {M(Oxidation (M))|F}PYVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 61.009 0 0 5.133 5.133 82.637 0 0 0 8.256886463274284 2.240378209512315 2.240378209512315 2.240378209512315 0 2.309894379144197 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}PYVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKN{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{M(Oxidation (M))|F}PYV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKGG{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKN{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F} 5.133;4.9445;3.9165;3.7346;3.2088;3.1418;2.5878;1.8855;1.5598;1.3779 +;+;-;-;-;-;-;-;-;- + 345 + NaN NaN 130690.9 NaN 11754 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14915 65.099 NaN 273200 35 0 21364 0.261 + 27082 SYMGHFDLL 9 59 549.7497688734081 1097.4849848136162 2 549.7506103515625 MULTI HCD FTMS 0 0 0 14907 127949.8125 0.012352471260550541 172 -4.6141510009765625 8 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 48.345845343767074 0.03388484103555672 1 {I|L}{I|L} 2 7 22.831 0 0 2.0803 0 0 853.3078776173214 0 853.3078776173214 0 10.383643918355359 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.0803 + + 64 NaN NaN 125671 NaN 11755 3158 14907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14917 65.104 NaN 1494400 35 0 272030 0.327 + 32115 VYSFGFERL 9 101 559.287407210511 1116.560261487822 2 559.2877807617188 MULTI HCD FTMS 0 0 0 14916 802737.875 0.592906872791857 3 -0.0752105712890625 1 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 107.09958533191995 0.0034159042678574016 1 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L} 9 0 + 99.887 0 0 8.946 8.946 95.964 0 0 0 55.80998812022186 9.009461452434238 9.009461452434238 20.38364391835536 0 2.555462187404089 1.6989700043360187 0.75 0 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L};[YV]S{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{I|L};VY[YQ]{M(Oxidation (M))|F}ER{I|L};VYSE{I|L}GR{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]S{M(Oxidation (M))|F}GE[R{I|L}]{M(Oxidation (M))|F};VYS[PG]YYR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};[DV][HV]{I|L}G{M(Oxidation (M))|F}SP{M(Oxidation (M))|F};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}[R{I|L}]{M(Oxidation (M))|F} 8.946;7.1204;6.2997;6.2347;5.576;5.1155;4.5964;4.4541;4.384;4.2948 +;-;-;-;-;-;-;-;-;- + 4068 + NaN NaN 308439.1 NaN 11756 3159 14916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14918 65.108 NaN 2009400 35 0 195390 0.261 + 27301 SYQKVIELF 9 107 563.8106306773733 1125.6067084215465 2 563.8106689453125 MULTI HCD FTMS 0 0 0 14916 926804.4375 0.32297099747919694 -4 0.11797332763671875 2 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 93.93812099017352 0.0044227730261779084 1 {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F} 9 0 + 76.845 0 0 6.827 6.827 84.919 0 0 0 0.7403126772771884 10.464752771404733 0.7403126772771884 0.7403126772771884 0 3.110924374808178 0 0.3054621874040891 0.3807196863200844 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{I|L}{M(Oxidation (M))|F};[YQ]SKV{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V[YT]{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{M(Oxidation (M))|F}{I|L};[YQ]KSV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}V[YT]E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}NK{M(Oxidation (M))|F} 6.827;6.7612;6.2213;6.0089;5.9991;5.7771;5.7141;5.7113;5.3998;5.2948 +;-;-;-;-;-;-;-;-;- + 1948 NaN NaN 399861.9 NaN 11757 3159 14916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14919 65.112 NaN 781240 35 0 67212 0.261 + 9807 HYNWLIYHL 9 84 629.8219077281749 1257.6292625231497 2 629.822509765625 MULTI HCD FTMS 0 0 0 14916 279473.75 0.2438103592276767 -4 0.11797332763671875 3 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 103.35351024395868 0.004027461563756449 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 105.13 0 0 8.3594 8.3594 91.126 0 0 0 10.281512503836439 9.030899869919438 9.030899869919438 9.030899869919438 0 2.774227503252014 1.5228787452803376 0 1.055462187404089 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}NW{I|L}{I|L}NW{I|L};{[WN]|[YH]}GGW{I|L}{I|L}Y{I|L}H;[YN]HW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L} 8.3594;7.6413;7.6272;7.5418;7.1803;7.125;6.9091;6.8055;6.7304;6.5667 +;-;-;+;-;-;-;-;-;- + 1060 NaN NaN 200119.6 NaN 11758 3159 14916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14920 65.115 NaN 368670 35 0 105420 0.264 -1 TAIGIGDMF 9 55 470.7256501462239 939.4367473592479 2 470.7422180175781 MULTI HCD FTMS 0 0 0 14916 36669.8515625 0.5486950472454375 -1 0.02945709228515625 4 Oxidation (M) _TAIGIGDM(Oxidation (M))F_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 19.256988751693697 0.19398022840297344 1 {[DA]|[EG]}{M(Oxidation (M))|F} 3 -1 27.447 0 0 2.9217 0 0 0 603.2818455860635 603.2818455860635 11.288624837399293 0 0 0 0 0 1.6989700043360187 0 0 {[DA]|[EG]}{M(Oxidation (M))|F} 2.9217 - 82 NaN NaN 152457.5 NaN 11759 3159 14916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14921 65.119 NaN 526310 35 0 94257 0.261 + -1 LFLPKCCIL 9 83 582.3190626144344 1162.6235722956687 2 582.319580078125 MULTI HCD FTMS 0 0 0 14916 62726.08984375 0.4045214186862996 -4 0.11797332763671875 5 2 Carbamidomethyl (C) _LFLPKC(Carbamidomethyl (C))C(Carbamidomethyl (C))IL_ REV__ENST00000398576.6_1_13:46701143-46701437:-|nuORF 21.74664581756881 0.17247014374749275 1 DN{I|L}{M(Oxidation (M))|F}R{I|L}{I|L} 7 -1 53.166 0 0 4.573 0 0 0 288.11054407291255 288.11054407291255 32.19736975478526 0 0 0 0 1.8252574989159953 0 0 0 DN{I|L}{M(Oxidation (M))|F}R{I|L}{I|L} 4.573 - 269 + NaN NaN 177281.3 NaN 11760 3159 14916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14923 65.124 NaN 5807000 35 0 914330 0.327 + 5163 FFDAELSQM 9 101 552.2390895993532 1102.4636262655063 2 552.2398071289062 MULTI HCD FTMS 0 0 0 14922 3437906.25 1 0 0 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 QDAE{I|L}SQ{M(Oxidation (M))|F} 8 2 97.425 0 0 8.8371 0 0 166.061906150075 0 166.061906150075 0 55.02585881091255 0 0 0 3.1747425010840047 0 1.7249073637206092 0.9604093769761876 QDAE{I|L}SQ{M(Oxidation (M))|F} 8.8371 - 4864 + NaN NaN 958219.4 NaN 11761 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14924 65.128 NaN 634870 35 0 146800 0.261 + 8377 GYMEGYYTF 9 73 573.7262469290902 1145.4379409249802 2 573.7262573242188 MULTI HCD FTMS 0 0 0 14922 290903.78125 0.737730850931297 7 -0.2093048095703125 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 120.45040980043947 0.0012363446172167195 1 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 94.914 0 0 8.2862 8.2862 89.084 0 0 0 4.357285695614365 16.478174818886373 4.357285695614365 4.357285695614365 0 2.6989700043360187 0.958607314841775 0.8494850021680094 0 [YT]CEGYYT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EGYYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GYYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YG]GYYT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[MD]GYYT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YN]YYT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[YT]CN[HQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 8.2862;7.9058;6.3665;5.445;5.146;4.7968;4.5086;3.7155;2.8419;2.7451 -;+;-;-;-;-;-;-;-;- + 643 NaN NaN 176710.8 NaN 11762 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14925 65.132 NaN 1303200 35 0 227620 0.262 + 2324 DMREFVLLFMV 11 96 467.24166873157225 1398.7031767949168 3 467.24212646484375 MULTI HCD FTMS 0 0 0 14922 229107.921875 0.5616634367845573 -2 0.0489959716796875 3 Unmodified _DMREFVLLFMV_ CON__Q28107 2.6312355333042263 0.4073809613003177 1 [R{M(Oxidation (M))|F}]{I|L}NDP 6 8 28.536 0 0 2.0401 0 0 0 653.3020656074923 653.3020656074923 11.502256957507495 0 0 0 0 0.7134679910804405 0 0.25 0 [R{M(Oxidation (M))|F}]{I|L}NDP 2.0401 - 205 NaN NaN 286045.4 NaN 11763 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14926 65.135 NaN 499310 35 0 43280 0.261 + 11457 IYQFIMDRF 9 79 624.8075114680809 1247.6004700029616 2 624.807861328125 MULTI HCD FTMS 0 0 0 14922 211782.40625 0.7888307896773493 -2 0.0489959716796875 4 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 73.1962812333195 0.00805395026373928 1 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 106.27 0 0 8.5179 8.5179 92.301 0 0 0 83.6056768638928 9.009461452434238 9.009461452434238 9.208187539523749 0 2.912437995416459 2 0.4247425010840047 0.3054621874040891 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y{[MS]|[{M(Oxidation (M))|F}A]}G{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}C(Carbamidomethyl (C))[KS][VG]{M(Oxidation (M))|F} 8.5179;7.7798;7.1685;6.8965;6.4304;5.374;4.8457;4.5675;4.5072;4.406 +;-;+;-;-;-;-;-;-;- + 1287 + NaN NaN 166832.3 NaN 11764 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14927 65.138 NaN 253630 35 0 22776 0.261 + 33797 YLGYLKQLL 9 72 555.8290583431921 1109.643563753184 2 555.8131713867188 MULTI HCD FTMS 0 0 0 14922 31168.666015625 0.5624883507807268 -3 0.075225830078125 5 Unmodified _YLGYLKQLL_ REV__DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 12.531546534597751 0.2520865569484384 1 [Y{I|L}]D{M(Oxidation (M))|F}K{I|L}AQ 8 -1 42.133 0 0 3.797 0 0 0 128.1051108109473 128.1051108109473 23.83085333508717 0 0 0 0 0 2 0.3054621874040891 0.3494850021680094 [Y{I|L}]D{M(Oxidation (M))|F}K{I|L}AQ 3.797 - 267 NaN NaN 119049.8 NaN 11765 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14928 65.142 NaN 466570 35 0 66663 0.261 + 29579 VADPYVVIM 9 65 511.7647874743493 1021.5150220154986 2 511.76544189453125 MULTI HCD FTMS 0 0 0 14922 100250.75 0.31240203425957375 -7 0.19335174560546875 6 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 42.09456458481378 0.05572955244001856 1 VV{I|L}{M(Oxidation (M))|F} 4 5 46.938 0 0 4.595 0 0 545.2484337360049 0 545.2484337360049 0 25.969100130080562 0 0 0 1.8494850021680094 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.595 + + 92 + NaN NaN 146835.9 NaN 11766 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14929 65.145 NaN 166760 35 0 13375 0.261 + -1 NWRAEMLSHL 10 55 636.8114550741036 1271.6083572150071 2 636.8131103515625 MULTI HCD FTMS 0 0 0 14922 47345.30078125 0.36056513461252415 -6 0.16040802001953125 7 Oxidation (M) _NWRAEM(Oxidation (M))LSHL_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 17.11289562659939 0.35104376501799556 1 YH{I|L} 3 -1 36.198 0 0 2.8466 0 0 840.3947010724625 0 840.3947010724625 0 31.593793813122062 0 0 0 1 0 0 0 YH{I|L} 2.8466 - 17 NaN NaN 125214.7 NaN 11767 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14930 65.148 NaN 130850 35 0 10518 0.263 + 17215 LYNPVEGLL 9 49 509.28449278409954 1016.5544326349991 2 509.28460693359375 MULTI HCD FTMS 0 0 0 14922 39412.73828125 1 0 0 8 Unmodified _LYNPVEGLL_ REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF 13.042465956692817 0.2476723265019929 1 E[RP]{I|L}{I|L} 5 -1 26.51 0 0 2.6079 0 0 390.1910572736344 0 390.1910572736344 0 17.557809497117844 0 0 0 0.8807196863200843 0 0 0 E[RP]{I|L}{I|L} 2.6079 - 23 NaN NaN 105492 NaN 11768 3160 14922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14932 65.153 NaN 709650 35 0 48219 0.327 + 6563 FPLDLDVKM 9 95 547.2838380527611 1092.553123172322 2 547.2841186523438 MULTI HCD FTMS 0 0 0 14931 327024.65625 0.46227560627795744 -12 0.3245849609375 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 100.0907132914201 0.004261551473353346 1 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 94.612 0 0 8.6597 8.6597 93.441 0 0 0 82.13767093717598 14.973024840566467 14.973024840566467 9.899546149178633 0 2.7931576817365436 0 0.535666875892183 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]M[{I|L}T];{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];{NN|[MP]|[D{I|L}]|[EV]}P{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[RH]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[C(Carbamidomethyl (C))E]|[WC]}T{I|L}[{I|L}T] 8.6597;7.7536;7.3178;5.7418;4.5456;4.3675;3.1065;2.5937;2.1937;1.8843 +;+;-;-;-;-;-;-;-;- + 1302 + NaN NaN 192855.3 NaN 11769 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14933 65.158 NaN 255700 35 0 9621.8 0.261 -1 VEHCCMRCC 9 80 578.6947674737232 1155.3749820142464 2 578.6953125 MULTI HCD FTMS 0 0 0 14931 83858.2265625 0.7486940049044524 -5 0.1342620849609375 2 Carbamidomethyl (C),Oxidation (M) _VEHC(Carbamidomethyl (C))CM(Oxidation (M))RCC_ ENSG00000170011|ENST00000302541|MYRIP;MYRIP|p.S404Rfs*2|1|0.41|ENSG00000170011|chr3:40190008-40190009|-/G|frameshift_variant;nc|ENSG00000170011|Q8NFW9-2|MYRIP;nc|ENSG00000170011|Q8NFW9-5|MYRIP 1.844237919475145 0.33703635659052655 1 {I|L} 1 -1 8.7371 0 0 0.75622 0 0 380.1351620086787 659.1320894830686 1039.2672514917474 0 0 0 0 0 0.3252574989159953 0 0 0 {I|L} 0.75622 - 60 + NaN NaN 124242.8 NaN 11770 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14934 65.161 NaN 217940 35 0 33127 0.261 + 269 AFLKVSSVF 9 55 499.2894335142177 996.5643140952354 2 499.2892761230469 MULTI HCD FTMS 0 0 0 14931 83320.4296875 0.4644278387714353 5 -0.153656005859375 3 Unmodified _AFLKVSSVF_ ENSG00000100401|ENST00000356244|RANGAP1 36.506200033944 0.08138327636155518 1 SSV{M(Oxidation (M))|F} 4 5 33.66 0 0 3.3776 0 0 558.3531971662125 0 558.3531971662125 0 15.460025441274748 0 0 0 0.9247425010840047 0 0 0 + SSV{M(Oxidation (M))|F} 3.3776 + + 42 NaN NaN 107117 NaN 11771 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14935 65.164 NaN 162250 35 0 38155 0.261 + 16277 LQMLGVALGF 10 51 524.7963625397092 1047.5781721462183 2 524.7966918945312 MULTI HCD FTMS 0 0 0 14931 38344.05078125 0.3569694130961217 9 -0.258270263671875 4 Unmodified _LQMLGVALGF_ REV__ENSG00000152904|ENST00000282841|GGPS1;REV__nc|ENSG00000152904|O95749-2|GGPS1 10.823927491677226 0.4098686510432541 1 [Q{I|L}][WP]{NN|[MP]|[D{I|L}]|[EV]}{I|L} 7 -1 18.256 0 0 1.7427 0 0 0 179.08155711980456 179.08155711980456 1.8023316764263342 0 0 0 0 0.5 1 0 0 [Q{I|L}][WP]{NN|[MP]|[D{I|L}]|[EV]}{I|L} 1.7427 - 19 NaN NaN 109506.1 NaN 11772 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14936 65.168 NaN 203330 35 0 46625 0.261 + 34146 YPASTVQIL 9 44 496.2764316638347 990.5383103944695 2 496.2767028808594 MULTI HCD FTMS 0 0 0 14931 75471.3515625 0.2750636724825537 -5 0.1342620849609375 5 Unmodified _YPASTVQIL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 22.736283301280096 0.1639198954644489 1 Q{I|L}{I|L} 3 6 40.005 0 0 4.0387 0 0 618.2997303693375 0 618.2997303693375 0 39.5205343810445 0 0 0 1 0 0 0.3807196863200844 + Q{I|L}{I|L} 4.0387 + + 38 NaN NaN 124756.7 NaN 11773 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14937 65.171 NaN 149880 35 0 14444 0.262 + 22187 QLHALDVWAR 10 45 403.55575485016846 1207.6454351507055 3 403.8904724121094 MULTI HCD FTMS 0 0 0 14931 35067.41015625 1 0 0 6 Unmodified _QLHALDVWAR_ REV__ENSG00000174348|ENST00000312553|PODN;REV__nc|ENSG00000174348|Q7Z5L7-2|PODN;REV__nc|ENSG00000174348|Q7Z5L7-3|PODN;REV__nc|ENSG00000174348|Q7Z5L7-4|PODN 2.6312355333042263 0.46137615667793275 1 [R{M(Oxidation (M))|F}]{I|L}ND 5 -1 15.974 0 0 1.3228 0 0 0 559.2989082688975 559.2989082688975 8.984484532805155 0 0 0 0 0.8807196863200843 0 0 0 [R{M(Oxidation (M))|F}]{I|L}ND 1.3228 - 38 NaN NaN 100599.8 NaN 11774 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14938 65.174 NaN 190030 35 0 28257 0.261 -1 LDCWFDEDF 9 51 416.16329654872806 NaN 0 416.1630554199219 PEAK HCD FTMS 0 0 0 14931 10012.5166015625 0.2750472065939969 4 -0.1146240234375 7 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))WFDEDF_ ENSG00000186912|ENST00000374519|P2RY4 5.296884461304476 0.2695788793730278 1 N 1 -1 2.7642 0 0 0.33291 0 0 289.0340993456999 424.20908533267817 713.243184678378 0 0 0 0 0 0 0 0 0 N 0.33291 - 3 + NaN NaN 105230.2 NaN 11775 3161 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14940 65.179 NaN 6559200 35 0 1877800 0.327 + -1 GFIICWLIMAK 11 106 456.5784833434032 1366.7136206304097 3 456.5789489746094 MULTI HCD FTMS 0 0 0 14939 2247909.5 0.8281625279131574 -1 0.026153564453125 1 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 14.218169984304629 0.3331990305275193 1 {I|L}NDP{[HG]|PP}{I|L}{I|L}GE 10 -1 88.153 0 0 6.45 0 0 303.16961808116156 0 303.16961808116156 0 69.61085577954421 0 0 0 2.7302046884880937 0 0.3494850021680094 1.274227503252014 {I|L}NDP{[HG]|PP}{I|L}{I|L}GE 6.45 - 494 NaN NaN 1034165.5 NaN 11776 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14941 65.184 NaN 780680 35 0 33974 0.261 + 27171 SYNNFFRMF 9 96 621.2740788742191 1240.533604815238 2 621.2750244140625 MULTI HCD FTMS 0 0 0 14939 289155.34375 0.05219301251995446 34 -0.9414901733398438 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 75.556 0 0 6.0906 6.0906 86.932 0 0 0 6.477970719664597 36.266734124050544 6.477970719664597 8.424226808222059 0 3 0 0.9361818737241734 1.4802046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NS]YN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NS]YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NS]QVC(Carbamidomethyl (C))PSR{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NN[MT] 6.0906;5.4115;5.3483;5.3483;4.6692;4.4027;3.9855;3.6605;2.274;2.0745 +;-;-;-;-;-;-;-;-;- + 6282 NaN NaN 228924.5 NaN 11777 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14942 65.187 NaN 941870 35 0 96929 0.261 + 11868 KFDDIRIYF 9 106 608.8214222990848 1215.6282916649695 2 608.8217163085938 MULTI HCD FTMS 0 0 0 14939 131237.984375 0.11004430422468367 14 -0.38588714599609375 3 Unmodified _KFDDIRIYF_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 28.181266145913348 0.1195993865820924 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K 7 6 53.833 0 0 4.4284 0 0 0 401.1100123352058 401.1100123352058 0.8700023707644462 0 0 0 0 0 1.6989700043360187 0.23965182871044374 1.2887254899964358 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K 4.4284 - 5790 NaN NaN 229426.5 NaN 11778 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14943 65.191 NaN 174160 35 0 15288 0.261 + 23067 REEPIEWEF 9 59 617.789948232491 1233.565343531782 2 617.7894897460938 MULTI HCD FTMS 0 0 0 14939 35241.0859375 0.45862701223680735 1 -0.02944183349609375 4 Unmodified _REEPIEWEF_ ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-2|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-6|CUX1 22.65808497894818 0.16459551161911185 1 WE{M(Oxidation (M))|F} 3 6 19.666 0 0 1.5942 0 0 753.3639407991633 0 753.3639407991633 0 5.853481135844877 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + WE{M(Oxidation (M))|F} 1.5942 + + 36 + NaN NaN 111910.5 NaN 11779 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14944 65.194 NaN 160910 35 0 10113 0.261 + 35750 YYLQHPPISF 10 55 632.8215767673016 1263.6286006014031 2 632.8220825195312 MULTI HCD FTMS 0 0 0 14939 42406.23828125 0.6200281365830523 -1 0.026153564453125 5 Unmodified _YYLQHPPISF_ ENSG00000159842|ENST00000302538|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-2|ABR;nc|ENSG00000159842|Q12979-3|ABR;nc|ENSG00000159842|Q12979-4|ABR;VPS53-ABR|1|fusion 24.990960013464015 0.27735500881591096 1 YY[R{I|L}]K{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 9 5 + 42.113 0 0 3.3327 3.3327 88.633 0 0 0 12.663800089887545 25.915149811213496 12.663800089887545 42.11303739409743 0 0.5 2 0 0 YY[R{I|L}]K{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 3.3327 - 66 NaN NaN 101477.8 NaN 11780 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14945 65.197 NaN 153180 35 0 18610 0.262 + -1 SETPLAILMS 10 55 539.278604412555 1076.5426558919098 2 539.2484130859375 MULTI HCD FTMS 0 0 0 14939 33190.890625 0.14423566134020216 12 -0.33349609375 6 Oxidation (M) _SETPLAILM(Oxidation (M))S_ REV__ENSG00000135919|ENST00000409304|SERPINE2;REV__ENST00000478966.1_1_2:224840586-224849719:-|nuORF;REV__nc|ENSG00000135919|P07093-3|SERPINE2;REV__nc|ENSG00000135919|P07093|SERPINE2 12.240655878213236 0.39661705172222156 1 {I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 -1 25.177 0 0 2.3387 0 0 598.29594618965 0 598.29594618965 0 19.69273760456403 0 0 0 1.1989700043360187 0 0 0 {I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.3387 + + 23 NaN NaN 123937.8 NaN 11781 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14946 65.201 NaN 176580 35 0 41415 0.261 + 34778 YQQRQSVIFHK 11 43 478.59193155696414 NaN 0 478.5920104980469 PEAK HCD FTMS 0 0 0 14939 8190.3212890625 0.2672313106073786 1 -0.02944183349609375 7 Unmodified _YQQRQSVIFHK_ ENSG00000133019|ENST00000676153|CHRM3 1.1097533296519684 0.33897209286470975 1 S 1 10 6.9897 0 0 0.73178 0 0 703.0588040545549 162.05629907779533 865.1151031323502 0 0 0 0 0 0 0 0 0 + S 0.73178 + + 14 + NaN NaN 112215.1 NaN 11782 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14947 65.204 NaN 101880 35 0 9312.5 0.261 + 22599 QTLLDASDL 9 52 488.2531217123919 974.4916904915838 2 488.25421142578125 MULTI HCD FTMS 0 0 0 14939 9620.13671875 0.036971686148665285 -8 0.2160797119140625 8 Unmodified _QTLLDASDL_ ENSG00000050030|ENST00000055682|NEXMIF 5.731851221503515 0.3075653528928475 1 {I|L}{[DS]|[MA]|[CV]|TT}{I|L} 4 5 12.435 0 0 1.2761 0 0 528.2548695294937 0 528.2548695294937 0 12.43501263708417 0 0 0 0.4247425010840047 0 0 0 {I|L}{[DS]|[MA]|[CV]|TT}{I|L} 1.2761 - 6 NaN NaN 96267.3 NaN 11783 3162 14939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14949 65.209 NaN 4046400 35 0 412710 0.327 -1 0 113 604.7680411660131 1207.521529398826 2 604.7684936523438 MULTI HCD FTMS 0 0 0 14948 2816260.75 0.8837006527828266 3 -0.09806060791015625 1 NaN NaN 1 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 85.328 0 0 7.0664 0 0 291.15818984199376 0 291.15818984199376 0 62.21926046813401 0 0 0 2.5387254899964358 0 1.2179001828205482 1.2302046884880937 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.0664 - 7463 NaN NaN 639450.4 NaN 11784 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14950 65.213 NaN 1462400 35 0 164480 0.261 + 6517 FPISEETIKL 10 109 588.8291292699886 1175.643705606777 2 588.829345703125 MULTI HCD FTMS 0 0 0 14948 1437862.625 0.6727832586361829 7 -0.20267486572265625 2 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 135.86342318000737 7.994840703560577E-06 1 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 109.35 0 0 9.3014 9.3014 90.77 0 0 0 33.96566431036183 1.1607435312808434 1.1607435312808434 5.153383001076207 0 3.2346368802282015 0 1.2803695511246982 0.3054621874040891 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SETE{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}EET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SETE{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}STEE{I|L}K{I|L};[{I|L}P]SE{M(Oxidation (M))|F}ET{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}ETE{I|L}K{I|L};[{I|L}P]SEE{M(Oxidation (M))|F}T{I|L}K{I|L} 9.3014;8.863;8.0357;7.905;7.3337;7.0776;7.0604;6.5699;6.5063;6.1892 +;+;-;-;-;-;-;-;-;- + 4323 + NaN NaN 305212.3 NaN 11785 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14951 65.217 NaN 1109100 35 0 131270 0.261 -1 0 107 608.8500402887187 1215.6855276442373 2 608.8502807617188 MULTI HCD FTMS 0 0 0 14948 655772.9375 0.6511673933189037 -3 0.085113525390625 3 NaN NaN 1 {I|L}MN{I|L}V{I|L}K 7 -1 87.076 0 0 7.1627 0 0 0 401.16669641666255 401.16669641666255 46.410101249690214 0 0 0 0 2.5669015600442577 1.5228787452803376 0 0.6237125054200234 {I|L}MN{I|L}V{I|L}K 7.1627 - 8014 + NaN NaN 248181.3 NaN 11786 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14952 65.22 NaN 371640 35 0 28818 0.261 + 11749 KDMQEYFDF 9 71 611.7574396651034 1221.5003263970068 2 611.757568359375 MULTI HCD FTMS 0 0 0 14948 164430.796875 0.7706577316327691 3 -0.09806060791015625 4 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 59.781 0 0 4.8941 0 0 305.1377125470719 0 305.1377125470719 0 51.7089605114942 0 0 0 2.3494850021680094 0 0 0.805462187404089 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8941 - 764 NaN NaN 146444.2 NaN 11787 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14953 65.223 NaN 417150 35 0 40061 0.262 + 20140 NYISGIQTI 9 70 504.771584415814 1007.528615898428 2 504.77178955078125 MULTI HCD FTMS 0 0 0 14948 91886.359375 0.050324351695388965 19 -0.5132064819335938 5 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 49.52724829834842 0.03223213920720493 1 [YN]{I|L}SAVQT{I|L} 9 2 + 59.949 0 0 5.9501 5.9501 87.871 0 0 0 20.536590338942915 31.171160620092184 20.536590338942915 9.208187539523749 0 1.7914478256039672 1.3979400086720375 0 0.3494850021680094 [YN]{I|L}SAVQT{I|L};[YN]{I|L}SAV[AG]T{I|L} 5.9501;5.0362 -;- 199 NaN NaN 144819.9 NaN 11788 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14954 65.227 NaN 280320 35 0 89005 0.262 + 23053 RDVARNTEQQ 10 48 406.2075769311909 NaN 0 406.2169189453125 PEAK HCD FTMS 0 0 0 14948 18344.859375 1 0 0 6 Unmodified _RDVARNTEQQ_ ENST00000582337.5_1_18:72347588-72515991:+|nuORF 4.897010918128616 0.3359931263921593 1 {I|L}R{I|L}Y 4 9 14.949 0 0 1.8446 0 0 99.9883975989364 162.05608545474846 262.04448305368487 0 0 0 0 0 0 0 0 0 {I|L}R{I|L}Y 1.8446 - 14 + NaN NaN 144925.3 NaN 11789 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14955 65.23 NaN 108050 35 0 19602 0.261 -1 QMEYLLQKIQE 11 37 480.24530224627176 1437.7140773390154 3 480.2452392578125 MULTI HCD FTMS 0 0 0 14948 36172.71484375 0.8687916730034134 3 -0.09806060791015625 7 Oxidation (M) _QM(Oxidation (M))EYLLQKIQE_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000550589.1_1_12:82746932-82748399:-|nuORF 1.7824221048909905 0.41110356865096537 1 {I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3 -1 15.458 0 0 1.0751 0 0 1049.5413218014921 0 1049.5413218014921 0 5.725599829726422 0 0 0 0.5 0 0 0 {I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.0751 + + 9 NaN NaN 98645.8 NaN 11790 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14956 65.233 NaN 158320 35 0 22704 0.261 + 31758 VYLPGHFFHL 10 46 410.5533479704287 1228.6382145114862 3 410.5538330078125 MULTI HCD FTMS 0 0 0 14948 22980.525390625 0.4313299233205357 6 -0.17986297607421875 8 Unmodified _VYLPGHFFHL_ ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-2|GSAP;nc|ENSG00000186088|A4D1B5-3|GSAP 7.101721422024254 0.4377131641736035 1 VY{I|L} 3 7 45.234 0 0 3.6816 0 0 0 850.4001877494854 850.4001877494854 30.62977812912628 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 + VY{I|L} 3.6816 + + 15 + NaN NaN 96993.3 NaN 11791 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14957 65.237 NaN 323700 35 0 92708 0.261 + 25024 RYYLKFNFL 9 57 421.900775291409 1262.680496474427 3 422.2359313964844 MULTI HCD FTMS 0 0 0 14948 52464.07421875 0.4572578033545396 -3 0.085113525390625 9 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 20.453626601364224 0.18364154288633264 1 [YR]Y{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L} 9 2 + 49.855 0 0 3.9484 3.9484 89.519 0 0 0 4.762036441594191 35.8759123398972 4.762036441594191 49.85531242661757 0 0.8494850021680094 0 0.4247425010840047 0 [YR]Y{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L} 3.9484 - 68 NaN NaN 131432.5 NaN 11792 3163 14948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14959 65.242 NaN 767430 35 0 449230 0.327 -1 0 45 427.3023969861822 852.5902410391644 2 427.3025817871094 MULTI HCD FTMS 0 0 0 14958 249817.890625 0.31343587151837465 -6 0.166961669921875 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.4063 0 0 687.5443253670926 0 687.5443253670926 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4063 - 3 + NaN NaN 196034.7 NaN 11793 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14960 65.246 NaN 762520 35 0 136590 0.261 + 9095 HPFHILIAL 9 78 530.818618658761 1059.622684384322 2 530.8189086914062 MULTI HCD FTMS 0 0 0 14958 223693.65625 0.46782033030552506 4 -0.11754608154296875 2 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 56.04830969593885 0.023109620888794903 1 {I|L}{I|L}A{I|L} 4 5 46.938 0 0 4.4297 0 0 631.3226340902501 0 631.3226340902501 0 23.38168156311241 0 0 0 1.5 0 0 0 + {I|L}{I|L}A{I|L} 4.4297 + + 260 NaN NaN 197412.5 NaN 11794 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14961 65.25 NaN 209240 35 0 16871 0.261 + -1 WCTQLLVRFA 10 55 647.3431912762923 1292.6718296193844 2 647.3433837890625 MULTI HCD FTMS 0 0 0 14958 81659.4140625 0.4905585223215191 5 -0.14701080322265625 3 Carbamidomethyl (C) _WC(Carbamidomethyl (C))TQLLVRFA_ REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF 16.149105407346934 0.3600587335443843 1 {[ES]|[DT]|[{I|L}C]}QSGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]} 12 -1 + 73.554 0 0 5.6901 5.6901 86.56 0 0 0 62.7524439246897 7.447274948966935 7.447274948966935 9.098233696509126 0 2.274227503252014 0 0 0 {[ES]|[DT]|[{I|L}C]}QSGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]};{[ES]|[DT]|[{I|L}C]}[AG]SGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]};{[ES]|[DT]|[{I|L}C]}QS{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]};{[ES]|[DT]|[{I|L}C]}[AG]S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]} 5.6901;4.9863;4.3301;3.6239 -;-;-;- 131 + NaN NaN 116635.2 NaN 11795 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14962 65.253 NaN 168040 35 0 20297 0.264 -1 TAMDVVYAL 9 40 499.7466801642808 997.4788073953616 2 499.7463684082031 MULTI HCD FTMS 0 0 0 14958 28213.25 0.035380010715610276 36 -0.9964065551757812 4 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 11.640296217721598 0.25978676193971967 1 V{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 4 -1 26.198 0 0 2.6264 0 0 533.2145079342273 0 533.2145079342273 0 20.51152522447381 0 0 0 1 0 0 0 V{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 2.6264 - 23 + NaN NaN 113152.6 NaN 11796 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14963 65.256 NaN 299970 35 0 12164 0.261 + 22712 QYASAFHFL 9 78 542.2668609850439 1082.5191690368877 2 542.2673950195312 MULTI HCD FTMS 0 0 0 14958 48662.515625 0.05939711036888905 16 -0.42142486572265625 5 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 18.13498045792455 0.20367413111508956 1 [YQ]ASA[NG]{I|L}{I|L}{M(Oxidation (M))|F} 10 4 [YQ] + + 30.979 2.3854 0.81938 2.8618 2.8618 59.21 0 0 0 0 8.003574386705381 0 0 0 0 0 0 0 [YQ]ASA[NG]{I|L}{I|L}{M(Oxidation (M))|F} 2.8618 - 337 + NaN NaN 132715.8 NaN 11797 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14964 65.26 NaN 211530 35 0 39083 0.261 + 10648 IPVDATSPVG 10 47 478.2569553302793 NaN 0 478.2394104003906 PEAK HCD FTMS 0 0 0 14958 22401.625 0.58590998111031 1 -0.02617645263671875 6 Unmodified _IPVDATSPVG_ ENSG00000204351|ENST00000375394|SKIC2 3.2813086475875832 0.33737594360511275 1 S 1 9 6.9897 0 0 0.73229 0 0 702.3891415181774 162.05596338443596 864.4451049026134 0 0 0 0 0 0 0 0 0 + S 0.73229 + + 6 + NaN NaN 110855.3 NaN 11798 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14965 65.263 NaN 154960 35 0 12091 0.261 -1 VYMDWYEKF 9 60 648.7837956152945 1295.5530382973889 2 649.6627197265625 MULTI HCD FTMS 0 0 0 14958 43555.13671875 0.045726874611920224 64 -1.7006759643554688 7 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 31.26834338654808 0.10542797264966089 1 [YV]{M(Oxidation (M))|F} 3 -1 25.33 0 0 1.9551 0 0 0 883.3688396492045 883.3688396492045 4.589088628149316 0 0 0 0 0.4247425010840047 2 0 0 [YV]{M(Oxidation (M))|F} 1.9551 + + 118 NaN NaN 98416.4 NaN 11799 3164 14958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14967 65.268 NaN 4906800 35 0 776630 0.327 + 5164 FFDAELSQM 9 99 552.2390895993532 1102.4636262655063 2 552.2396850585938 MULTI HCD FTMS 0 0 0 14966 2825057.75 0.8217378673429504 5 -0.143646240234375 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 97.956 2.8432 0.96662 8.8852 8.8852 68.163 0 0 0 0 52.14049323143962 0 0 0 3.1989700043360187 0 1.7856668758921828 0.9674165578762485 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.8852 + + 5118 + NaN NaN 784574.9 NaN 11800 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14968 65.272 NaN 3729300 35 0 412900 0.233 + 27302 SYQKVIELF 9 110 563.8106306773733 1125.6067084215465 2 563.8109130859375 MULTI HCD FTMS 0 0 0 14966 2408001 0.8391354782447336 2 -0.06516265869140625 2 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 128.93241758739586 0.0006697181619526092 1 {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F} 9 0 + 87.463 0 0 7.7703 7.7703 88.781 0 0 0 5.617515817243515 16.478174818886373 5.617515817243515 5.617515817243515 0 2.774227503252014 0 0.8539171939081174 0.6109243748081782 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{I|L}{M(Oxidation (M))|F};[YQ]SKV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V[YT]{I|L}E{I|L}{M(Oxidation (M))|F};[KQ]YSV{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{M(Oxidation (M))|F}{I|L};[YQ]KSV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}V[YT]E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V{I|L}[YT]E{I|L}{M(Oxidation (M))|F} 7.7703;7.2712;6.9522;6.8916;6.47;6.4616;6.2926;6.1873;5.9589;5.8025 +;-;-;-;-;-;-;-;-;- + 2567 NaN NaN 552876.1 NaN 11801 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14969 65.275 NaN 1734100 35 0 166920 0.261 + 9808 HYNWLIYHL 9 95 629.8219077281749 1257.6292625231497 2 629.822021484375 MULTI HCD FTMS 0 0 0 14966 1063871.625 0.9281119356053373 2 -0.06516265869140625 3 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 114.6490535036381 0.0021834323520089267 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 107.73 0 0 8.5658 8.5658 91.423 0 0 0 12.921656121837657 9.030899869919438 9.030899869919438 9.030899869919438 0 2.774227503252014 1.5228787452803376 0 1.4119543704721593 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}GGW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}{I|L}{I|L}YHYH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{I|L}WNYH{I|L};HYNW{I|L}{I|L}{I|L}YH 8.5658;7.8477;7.8336;7.5383;7.3867;7.1155;7.0604;7.0332;6.7846;6.74 +;-;-;+;-;-;-;-;-;- + 1784 NaN NaN 361706.6 NaN 11802 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14970 65.279 NaN 2034200 35 0 879150 0.264 + 34843 YRQHVKMSII 10 56 425.57271711330554 1273.6963219401166 3 425.5729675292969 MULTI HCD FTMS 0 0 0 14966 564239 0.4681589688934763 -2 0.05902862548828125 4 Unmodified _YRQHVKMSII_ REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1 10.898955630103616 0.4091668631510381 1 YY 2 -1 36.198 0 0 2.842 0 0 0 944.5470757548106 944.5470757548106 5.228787452803374 0 0 0 0 0 2 0 0 YY 2.842 - 17 + NaN NaN 392316.4 NaN 11803 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14971 65.282 NaN 1247700 35 0 155800 0.261 + 32116 VYSFGFERL 9 98 559.287407210511 1116.560261487822 2 559.2882080078125 MULTI HCD FTMS 0 0 0 14966 299175.40625 0.22097269863580427 9 -0.245025634765625 5 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 40.23920728925047 0.06424668180817725 1 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 9 5 70.231 0 0 6.2899 0 0 0 128.1086489220833 128.1086489220833 27.225913558603324 0 0 0 0 0.9247425010840047 1.6989700043360187 0.8481362441963329 1.5669015600442577 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 6.2899 - 4242 NaN NaN 283328 NaN 11804 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14972 65.285 NaN 970540 35 0 162960 0.262 -1 KMDMKKLKQSM 11 99 467.24166873157225 1398.7031767949168 3 467.57611083984375 MULTI HCD FTMS 0 0 0 14966 230201.609375 0.6724175104459764 2 -0.06516265869140625 6 2 Oxidation (M) _KM(Oxidation (M))DM(Oxidation (M))KKLKQSM_ ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH 3.8459078486920597 0.402053821155582 1 [R{M(Oxidation (M))|F}]{I|L}NDD{I|L} 7 -1 26.431 0 0 1.8897 0 0 0 522.2752184620967 522.2752184620967 8.086229183695647 0 0 0 0 0.4247425010840047 0 0 0 [R{M(Oxidation (M))|F}]{I|L}NDD{I|L} 1.8897 - 186 NaN NaN 236347.6 NaN 11805 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14973 65.289 NaN 228260 35 0 58541 0.261 -1 TAIGIGDMF 9 55 470.7256501462239 939.4367473592479 2 470.7419738769531 MULTI HCD FTMS 0 0 0 14966 9027.0263671875 0.13507239456881168 5 -0.143646240234375 7 Oxidation (M) _TAIGIGDM(Oxidation (M))F_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 20.453626601364224 0.18364154288633264 1 {[DA]|[EG]}{M(Oxidation (M))|F} 3 -1 25.942 0 0 2.7615 0 0 0 603.2818150684853 603.2818150684853 7.204999916446795 0 0 0 0 0 1.6989700043360187 0 0 {[DA]|[EG]}{M(Oxidation (M))|F} 2.7615 - 24 NaN NaN 121477.5 NaN 11806 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14974 65.292 NaN 386300 35 0 80074 0.261 + 8378 GYMEGYYTF 9 67 573.7262469290902 1145.4379409249802 2 573.7263793945312 MULTI HCD FTMS 0 0 0 14966 209681.046875 0.5317503143842649 12 -0.32695770263671875 8 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 120.45040980043947 0.0012363446172167195 1 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 100.37 0 0 8.7628 8.7628 91.155 0 0 0 7.659167939666318 16.478174818886373 7.659167939666318 7.659167939666318 0 2.805462187404089 1.5228787452803376 0.8494850021680094 0 [YT]CEGYYT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EGYYT{M(Oxidation (M))|F};[YT]C[KP]GDDT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}[KP]GDDT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[HT]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}[MT]T{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]E{M(Oxidation (M))|F}[YG] 8.7628;8.0941;5.9672;5.0769;4.9934;3.8914;2.5657;1.4494;1.3802 -;+;-;-;-;-;-;-;- + 377 NaN NaN 149130.7 NaN 11807 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14975 65.295 NaN 423690 35 0 71436 0.261 + 28737 TSWLTGIITAT 11 79 582.3190626144344 1162.6235722956687 2 582.31982421875 MULTI HCD FTMS 0 0 0 14966 83782.4765625 0.5403143471008358 2 -0.06516265869140625 9 Unmodified _TSWLTGIITAT_ ENSG00000175398|ENST00000309675|OR10P1 15.248480904072842 0.3242218977034194 1 {I|L}{I|L}[C(Carbamidomethyl (C))C]R{I|L}{I|L} 7 9 48.588 0 0 4.1792 0 0 0 288.1124361627563 288.1124361627563 27.619025876622914 0 0 0 0 1.9247425010840047 0 0 0 {I|L}{I|L}[C(Carbamidomethyl (C))C]R{I|L}{I|L} 4.1792 - 272 + NaN NaN 152619.1 NaN 11808 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14976 65.299 NaN 285620 35 0 51092 0.261 + 27083 SYMGHFDLL 9 71 549.7497688734081 1097.4849848136162 2 549.7506103515625 MULTI HCD FTMS 0 0 0 14966 60230.24609375 0.005814720391942219 179 -4.814125061035156 10 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 48.345845343767074 0.03388484103555672 1 {I|L}{I|L} 2 7 23.711 0 0 2.1605 0 0 853.3062961775693 0 853.3062961775693 0 2.7422750325201406 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.1605 + + 79 NaN NaN 142492.3 NaN 11809 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14977 65.302 NaN 339620 35 0 22629 0.261 + 31798 VYMDWYEKF 9 68 648.7837956152945 1295.5530382973889 2 648.7837524414062 MULTI HCD FTMS 0 0 0 14966 112436.765625 0.048051681242883684 67 -1.7924270629882812 11 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 78.06048673739656 0.006479972202176041 1 [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 88.286 0 0 6.8146 6.8146 88.542 0 0 0 1.528033478235784 81.29670030985565 1.528033478235784 9.07312836760731 0 2.6747425010840047 2 0.6747425010840047 0 + + [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}DWY[VG]T{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}D[{M(Oxidation (M))|F}T]TRT{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 6.8146;6.1142;5.1341;4.7959 +;-;-;- + 494 NaN NaN 149716.2 NaN 11810 3165 14966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14979 65.307 NaN 1124400 35 0 87188 0.327 + 6564 FPLDLDVKM 9 105 547.2838380527611 1092.553123172322 2 547.2837524414062 MULTI HCD FTMS 0 0 0 14978 618781.25 0.8746969747703307 -7 0.2027130126953125 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 110.5527297667825 0.0028521687250969148 1 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 104.88 0 0 9.5991 9.5991 91.764 0 0 0 61.53720958383822 16.478174818886373 16.478174818886373 6.9858408651094095 0 2.916386562212267 0 0.535666875892183 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};[{I|L}P]D{I|L}D{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}[VS]GV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{I|L}D{M(Oxidation (M))|F}VK{M(Oxidation (M))|F} 9.5991;8.9597;8.2226;7.3917;6.2085;6.1486;5.912;4.8782;4.8485;4.552 +;+;-;-;-;-;-;-;-;- + 3168 + NaN NaN 255378.2 NaN 11811 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14980 65.311 NaN 1551000 35 0 223200 0.261 + 32117 VYSFGFERL 9 112 559.287407210511 1116.560261487822 2 559.2693481445312 MULTI HCD FTMS 0 0 0 14978 209827.375 0.15497972203862226 10 -0.25838470458984375 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 47.594388314883695 0.03493607795751234 1 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 9 5 70.287 0 0 6.295 0 0 0 128.1081865696165 128.1081865696165 29.35936820157373 0 0 0 0 0.9247425010840047 1.5228787452803376 0.9049471895720984 1.5669015600442577 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 6.295 - 5265 NaN NaN 321421.5 NaN 11812 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14981 65.315 NaN 1032300 35 0 157090 0.261 + 29580 VADPYVVIM 9 69 511.7647874743493 1021.5150220154986 2 511.7647705078125 MULTI HCD FTMS 0 0 0 14978 302405.53125 0.9423580684817531 -1 0.039031982421875 3 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 48.345845343767074 0.03388484103555672 1 [PS]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F} 9 3 + 52.183 0 0 5.1084 5.1084 83.988 0 0 0 1.9923339537769635 25.36262135688581 1.9923339537769635 5.242275032520141 0 2.2059771852360797 0 0 0 [PS]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F};[{I|L}T][PA]{[{M(Oxidation (M))|F}D]|MM}V{I|L}{M(Oxidation (M))|F};[VP][VS]{[{M(Oxidation (M))|F}D]|MM}V{I|L}{M(Oxidation (M))|F};[PS]VV{[{M(Oxidation (M))|F}D]|MM}V{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VY[VP] 5.1084;4.5952;3.2185;2.7541;2.6592;1.6083 -;+;-;-;-;- + 397 NaN NaN 233605.2 NaN 11813 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14982 65.318 NaN 459740 35 0 46182 0.261 + 11458 IYQFIMDRF 9 65 624.8075114680809 1247.6004700029616 2 624.8074340820312 MULTI HCD FTMS 0 0 0 14978 242382.9375 0.9028092908092578 4 -0.1046142578125 4 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 73.1962812333195 0.00805395026373928 1 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 108.47 0 0 8.6943 8.6943 92.547 0 0 0 86.07992697229326 9.889917747712644 9.889917747712644 9.208187539523749 0 2.912437995416459 2 0.4247425010840047 0.3494850021680094 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]{[WT]|[RM]}T{M(Oxidation (M))|F}D[VG]{M(Oxidation (M))|F};{I|L}[HA]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 8.6943;7.9563;7.1685;6.4304;5.5505;4.8457;4.5675;4.5072;3.9848;3.8025 +;-;+;-;-;-;-;-;-;- + 629 + NaN NaN 159912.6 NaN 11814 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14983 65.321 NaN 223540 35 0 19409 0.261 + 25026 RYYLKFNFL 9 66 632.3475013608723 1262.6804497885446 2 632.3472900390625 MULTI HCD FTMS 0 0 0 14978 109131.4765625 0.9269642256708064 1 -0.02613067626953125 5 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 24.020572477871973 0.15282392193088168 1 [YR]Y{I|L}K{M(Oxidation (M))|F} 6 3 24.191 0 0 1.9158 0 0 0 389.1837554221922 389.1837554221922 16.743609930009278 0 0 0 0 0.5774509799928715 0 0 0 + [YR]Y{I|L}K{M(Oxidation (M))|F} 1.9158 + + 226 NaN NaN 115199.2 NaN 11815 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14984 65.325 NaN 242450 35 0 34219 0.261 + -1 NWRAEMLSHL 10 56 636.8114550741036 1271.6083572150071 2 636.8120727539062 MULTI HCD FTMS 0 0 0 14978 131308.59375 1 0 0 6 Oxidation (M) _NWRAEM(Oxidation (M))LSHL_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 16.149105407346934 0.3600587335443843 1 YT{I|L}YYH{I|L} 7 -1 47.574 0 0 3.7412 0 0 300.1214771955094 0 300.1214771955094 0 33.8367107531424 0 0 0 1.25 0 0.805462187404089 0 YT{I|L}YYH{I|L} 3.7412 - 227 NaN NaN 142410.3 NaN 11816 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14985 65.328 NaN 250380 35 0 24477 0.261 -1 MLFGEGRSQHL 11 68 645.8167747745365 1289.618996615873 2 645.81787109375 MULTI HCD FTMS 0 0 0 14978 93730.9375 0.9265119638179099 1 -0.02613067626953125 7 Oxidation (M) _M(Oxidation (M))LFGEGRSQHL_ ENST00000358598.6_1_17:66526858-66526924:+|nuORF 9.38312468134398 0.3753269387758208 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV 4 -1 18.505 0 0 1.4349 0 0 0 828.3422686708135 828.3422686708135 10.04477421326463 0 0 0 0 0 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV 1.4349 - 117 NaN NaN 119542.4 NaN 11817 3166 14978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14987 65.333 NaN 2383000 35 0 674630 0.327 + -1 GFIICWLIMAK 11 87 456.5784833434032 1366.7136206304097 3 456.5788269042969 MULTI HCD FTMS 0 0 0 14986 1037781.5625 0.38233380935561073 4 -0.1013641357421875 1 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 14.218169984304629 0.3331990305275193 1 {I|L}NDP{[HG]|PP}{I|L}{I|L}GE 10 -1 84.703 0 0 6.1976 0 0 303.16902358222814 0 303.16902358222814 0 65.07683381878294 0 0 0 2.6861818737241734 0 0.3494850021680094 1.274227503252014 {I|L}NDP{[HG]|PP}{I|L}{I|L}GE 6.1976 - 556 NaN NaN 463624.6 NaN 11818 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14988 65.337 NaN 1215400 35 0 116820 0.261 -1 0 85 502.23069998583856 1002.4468470384771 2 502.2313232421875 MULTI HCD FTMS 0 0 0 14986 558275.6875 0.5580159310840803 -18 0.5043716430664062 2 NaN NaN 1 {I|L}D{M(Oxidation (M))|F}DPE 6 -1 51.111 0 0 5.0986 0 0 268.1535037827971 0 268.1535037827971 0 15.448923575332984 0 0 0 1.610924374808178 0 0.8882104921644451 0 {I|L}D{M(Oxidation (M))|F}DPE 5.0986 - 468 NaN NaN 282133.8 NaN 11819 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14989 65.341 NaN 376030 35 0 104390 0.261 + 34147 YPASTVQIL 9 39 496.2764316638347 990.5383103944695 2 496.27667236328125 MULTI HCD FTMS 0 0 0 14986 273369.375 0.9963248659922315 1 -0.02620697021484375 3 Unmodified _YPASTVQIL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 39.94969957227396 0.06557568441294001 1 VQ{I|L}{I|L} 4 5 44.029 0 0 4.4449 0 0 519.2335072248062 0 519.2335072248062 0 44.02880645020623 0 0 0 1.2614393726401687 0 0 0.4247425010840047 + VQ{I|L}{I|L} 4.4449 + + 60 NaN NaN 135743.1 NaN 11820 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14990 65.344 NaN 594730 35 0 70922 0.261 + -1 NYAICNKTNF 10 89 622.7904697821617 1243.5663866311234 2 622.7908325195312 MULTI HCD FTMS 0 0 0 14986 236280.9375 0.7502338964675853 14 -0.356231689453125 4 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ REV__ENSG00000134539|ENST00000336164|KLRD1;REV__ENST00000539374.1_1_12:10464095-10467389:+|nuORF;REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF;REV__nc|ENSG00000134539|Q13241-2|KLRD1;REV__nc|ENSG00000134539|Q13241-3|KLRD1 34.40172386719151 0.19398797222092762 1 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L} 9 -1 + 89.249 0 0 7.1769 7.1769 89.009 0 0 0 15.259621790487685 66.686296826175 15.259621790487685 8.544256385165951 0 2.3807196863200843 1.6989700043360187 0 1.860924374808178 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}VY{[RE]|[WV]}Q;[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[RE]|[WV]}Q;[YN]A{[DS]|[MA]|[CV]|TT}VWR{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]A{[DS]|[MA]|[CV]|TT}[KG]Q{M(Oxidation (M))|F}SQ;[YN]A{[DS]|[MA]|[CV]|TT}V{NN|[MP]|[D{I|L}]|[EV]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D;[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VW[YN]{I|L};[YN]A{[DS]|[MA]|[CV]|TT}V{[NV]|[RG]}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]A{[{M(Oxidation (M))|F}H]|[RQ]}YY[PG]{I|L} 7.1769;6.4898;5.2814;4.8245;4.621;4.5251;4.4844;4.4203;4.283;4.0891 -;-;-;-;-;-;-;-;-;- 1169 NaN NaN 178833.4 NaN 11821 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14991 65.348 NaN 223030 35 0 8799.5 0.261 + -1 CENEENRCC 9 71 578.6947674737232 1155.3749820142464 2 578.6954345703125 MULTI HCD FTMS 0 0 0 14986 53436.4453125 0.4770855274295066 1 -0.02620697021484375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))ENEENRCC_ REV__ENSG00000149090|ENST00000619888|PAMR1;REV__ENST00000534803.1_1_11:35474916-35547133:-|nuORF;REV__nc|ENSG00000149090|Q6UXH9-2|PAMR1;REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1 1.4819007175156935 0.3397831423917744 1 {I|L} 1 -1 6.9897 0 0 0.60497 0 0 380.13531513277513 659.1338595025999 1039.269174635375 0 0 0 0 0 0 0 0 0 {I|L} 0.60497 - 52 + NaN NaN 119171.3 NaN 11822 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14992 65.351 NaN 198910 35 0 18412 0.261 + 33798 YLGYLKQLL 9 71 555.8290583431921 1109.643563753184 2 555.813232421875 MULTI HCD FTMS 0 0 0 14986 10972.8896484375 0.19802331606217616 4 -0.1013641357421875 6 Unmodified _YLGYLKQLL_ REV__DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 12.531546534597751 0.2520865569484384 1 MQ 2 -1 9.5649 0 0 0.86198 0 0 113.11324256353403 734.3848360650999 847.498078628634 0 0 0 0 0 0.4247425010840047 0 0 0.5 MQ 0.86198 - 81 + NaN NaN 115193.4 NaN 11823 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14993 65.354 NaN 121140 35 0 14468 0.264 + 20459 PAPWPPPPPPR 11 50 403.55609130859375 NaN 0 403.55609130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PAPWPPPPPPR_ ENST00000554659.5_1_14:68129237-68141235:-|nuORF 1.214830529360525 0.33867401910978034 1 P 1 10 4.6041 0 0 0.57187 0 0 242.77502996512197 462.24718070787856 705.0222106730005 0 0 0 0 0 0 0 0 0 + P 0.57187 + + 2 + NaN NaN 96919.2 NaN 11824 3167 14986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14995 65.359 NaN 2651200 35 0 257770 0.327 -1 0 108 604.7680411660131 1207.521529398826 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14994 1653671.25 0.5188973936852945 8 -0.20604705810546875 1 NaN NaN 1 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 86.432 0 0 7.1578 0 0 291.158006736525 0 291.158006736525 0 63.84790779899292 0 0 0 2.5189301784845295 0 1.2689301784845295 1.2302046884880937 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.1578 - 4965 NaN NaN 497551.3 NaN 11825 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14996 65.364 NaN 1280100 35 0 153380 0.261 -1 0 100 608.8500402887187 1215.6855276442373 2 608.8506469726562 MULTI HCD FTMS 0 0 0 14994 670596.75 0.6658870970344496 2 -0.052276611328125 2 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}KGS{I|L} 10 -1 99.475 0 0 8.1827 0 0 0 144.04376806769042 144.04376806769042 59.54877890573205 0 0 0 0 3.0356668758921828 1.3979400086720375 1.2134679910804405 1.3441876774005248 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}KGS{I|L} 8.1827 - 10403 NaN NaN 284617.5 NaN 11826 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14997 65.367 NaN 626750 35 0 60326 0.261 + 6518 FPISEETIKL 10 88 588.8291292699886 1175.643705606777 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14994 536824.4375 0.2511828933426696 12 -0.3038787841796875 3 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 107.5634045930896 5.418360979759365E-05 1 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 101.53 0 0 8.6365 8.6365 95.972 0 0 0 58.9350781693193 0.72051538364164 0.72051538364164 24.72811589762955 0 2.7416440611282624 0 1.0356668758921828 0.2614393726401688 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}E{M(Oxidation (M))|F}T{I|L}K{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}D[YV]{I|L}K{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}D{I|L}[YV]K{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}E[{I|L}T]{M(Oxidation (M))|F}K{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}EV[YV]K{I|L} 8.6365;6.5331;5.8517;4.2643;3.3119;2.842;2.6818;2.4362 +;+;-;-;-;-;-;- + 796 + NaN NaN 176182.1 NaN 11827 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14998 65.37 NaN 1617100 35 0 169410 0.261 + 30649 VPDPKELLL 9 84 512.3077278541672 1022.6009027751344 2 512.3079833984375 MULTI HCD FTMS 0 0 0 14994 491081.78125 0.6410628399673974 -2 0.052337646484375 4 Unmodified _VPDPKELLL_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-3|TACC2 69.33821966488729 0.009302356455414924 1 [VP]DPKE{I|L}{I|L}{I|L} 9 0 + 57.099 0 0 5.5837 5.5837 82.799 0 0 0 1.906592950506365 3.3868910397398295 1.906592950506365 0.9691001300805624 0 1.7231975075880328 1.3979400086720375 0.5866968715561641 0 + + [VP]DPKE{I|L}{I|L}{I|L};[VP]DPK{I|L}E{I|L}{I|L};[DP]VPKE{I|L}{I|L}{I|L};[DP]VPK{I|L}E{I|L}{I|L};VPDPKE{I|L}{I|L}{I|L};{I|L}{I|L}E[KP]DPV{I|L};{I|L}{I|L}E[KP]DP{I|L}V;{I|L}{I|L}E[KP]V[DP]{I|L};{I|L}{I|L}E[KP]VEPV 5.5837;5.4889;5.3972;5.3025;5.2525;2.1897;1.2828;1.0015;0.27289 +;-;-;-;+;-;-;-;- + 657 NaN NaN 330981.8 NaN 11828 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 14999 65.374 NaN 560060 35 0 28882 0.261 + 27172 SYNNFFRMF 9 92 621.2740788742191 1240.533604815238 2 621.2747802734375 MULTI HCD FTMS 0 0 0 14994 275912.625 0.04980268012438729 40 -1.0748825073242188 5 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 106.94017166704063 0.003441928997083001 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 66.745 0 0 5.3804 0 0 63.998080147091805 0 63.998080147091805 0 35.10213141451892 0 0 0 2.2104093769761874 0 0 0.3494850021680094 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.3804 - 1291 + NaN NaN 183189.2 NaN 11829 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15000 65.377 NaN 308970 35 0 19133 0.261 + 11750 KDMQEYFDF 9 65 611.7574396651034 1221.5003263970068 2 611.7578125 MULTI HCD FTMS 0 0 0 14994 135998.234375 0.6373993972015723 8 -0.20604705810546875 6 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 29.081581746732265 0.1154664336125038 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 59.887 0 0 4.9028 4.9028 85.328 0 0 0 2.0074990971912854 52.391143015546646 2.0074990971912854 9.164539485499255 0 2.274227503252014 0 0 0.7302046884880937 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}C{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{I|L}C{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[KC]EE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}A{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}GG{I|L}C{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[PS]C{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.9028;4.1525;3.3349;3.0884;2.384;2.3172;2.1385;1.9868;1.8416 -;-;-;-;-;-;-;-;- 391 NaN NaN 133868.5 NaN 11830 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15001 65.38 NaN 164260 35 0 11986 0.261 -1 FPYVRDFVM 9 57 595.2890978246447 1188.5636427160894 2 595.289306640625 MULTI HCD FTMS 0 0 0 14994 54373.4296875 0.1357797718037982 23 -0.6176605224609375 7 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 27.223235318498237 0.1251536255799991 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[VP]{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10 -1 + 37.826 0 0 3.1825 3.1825 88.364 0 0 0 0.8881746517799627 20.831590422496117 0.8881746517799627 37.82637491194109 0 0.8494850021680094 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[VP]{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.1825 - 51 NaN NaN 108930.6 NaN 11831 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15002 65.384 NaN 169890 35 0 19779 0.262 + 11744 KDMNFPVF 8 70 499.2443392329148 NaN 0 499.25372314453125 PEAK HCD FTMS 0 0 0 14994 12825.9931640625 0.355876377434728 -3 0.09136962890625 8 Unmodified _KDMNFPVF_ ENST00000464428.2_1_1:177936859-177991802:-|nuORF 8.593279151180031 0.38822285293237185 1 SVN 3 7 10.177 0 0 1.0213 0 0 263.11390932344835 430.2015780084594 693.3154873319078 0 0 0 0 0 0 0 0 0 SVN 1.0213 - 100 + NaN NaN 119940.4 NaN 11832 3168 14994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15004 65.389 NaN 809800 35 0 226180 0.326 + 14081 KYWDVPPPGF 10 57 603.3024488805338 1204.5903448278675 2 603.3031616210938 MULTI HCD FTMS 0 0 0 15003 285095.375 0.7397924149288172 9 -0.2156219482421875 1 Unmodified _KYWDVPPPGF_ ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 49.55428908609986 0.07941048486997417 1 [YV]GPPV{[WS]|[C(Carbamidomethyl (C)){I|L}]}GP{M(Oxidation (M))|F} 11 8 + 82.779 0 0 6.8719 6.8719 88.542 0 0 0 14.235162698957282 9.426132236780987 9.426132236780987 8.807196863200858 0 1 2 0.3807196863200844 0 [YV]GPPV{[WS]|[C(Carbamidomethyl (C)){I|L}]}GP{M(Oxidation (M))|F};[YV]GPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};[YV]GPPV{[QN]|[E{I|L}]|[KN]}{[QG]|[NA]}{M(Oxidation (M))|F};[YV]GP{[WS]|[C(Carbamidomethyl (C)){I|L}]}VPGP{M(Oxidation (M))|F};[YK]WDVPPGP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]Y{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CT]|[{M(Oxidation (M))|F}G]}[YK];[YV]G{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[KG]Y{M(Oxidation (M))|F};[YK]WDV[KG]Y{M(Oxidation (M))|F} 6.8719;6.1408;6.1408;5.9993;5.542;4.9738;4.2055;4.0806;3.7904;1.8325 -;-;-;-;-;-;-;-;-;- 521 NaN NaN 209025.1 NaN 11833 3169 15003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15005 65.393 NaN 780980 35 0 75720 0.261 + 4986 FAYIKYDNEL 10 97 638.3162774777584 1274.6180020223167 2 638.316650390625 MULTI HCD FTMS 0 0 0 15003 421098.8125 0.5023800411040731 -3 0.0818023681640625 2 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 17.11289562659939 0.35104376501799556 1 {[MS]|[{M(Oxidation (M))|F}A]}YDGK{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L} 11 4 + 62.662 0 0 4.9161 4.9161 87.152 0 0 0 5.862435673934293 46.30365513955183 5.862435673934293 10.255762612236907 0 2.353917193908117 0 0.5891368308784531 0 {[MS]|[{M(Oxidation (M))|F}A]}YDGK{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[QA]{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGK{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKA{I|L}DY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}[KQ]DY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD[KQ]{I|L}DY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[QA]{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}AKGDY{M(Oxidation (M))|F}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[QA]A{I|L}DY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKA{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L} 4.9161;4.1115;3.9615;3.8245;3.5623;3.4477;3.1569;3.1371;3.0199;2.9998 -;-;-;-;-;-;-;-;-;- 4123 NaN NaN 214679.2 NaN 11834 3169 15003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15006 65.397 NaN 530220 35 0 58704 0.261 + 13887 KYQELQVLF 9 71 584.3238319932752 1166.6331110533504 2 584.3240356445312 MULTI HCD FTMS 0 0 0 15003 317699.40625 0.5147476823298492 -3 0.0818023681640625 3 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 53.40400417844725 0.026808823219830042 1 E{I|L}QV{I|L}{M(Oxidation (M))|F} 6 3 68.237 0 0 5.8491 0 0 419.21809584785314 0 419.21809584785314 0 33.36941925122964 0 0 0 2.6861818737241734 0 0 0.3494850021680094 + E{I|L}QV{I|L}{M(Oxidation (M))|F} 5.8491 + + 404 NaN NaN 173301.6 NaN 11835 3169 15003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15007 65.4 NaN 245480 35 0 37678 0.261 + 9096 HPFHILIAL 9 54 530.818618658761 1059.622684384322 2 530.8187255859375 MULTI HCD FTMS 0 0 0 15003 156443.75 0.3271776590635211 9 -0.2156219482421875 4 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 36.466142684027034 0.08156716203802528 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{M(Oxidation (M))|F}{I|L}{I|L}A{I|L} 9 2 + 54.939 0 0 5.1848 5.1848 91.549 0 0 0 7.732646631054152 33.767959391884546 7.732646631054152 54.93887181533495 0 0.9247425010840047 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{M(Oxidation (M))|F}{I|L}{I|L}A{I|L} 5.1848 - 97 NaN NaN 113159.8 NaN 11836 3169 15003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15008 65.403 NaN 373840 35 0 104950 0.262 + 25025 RYYLKFNFL 9 53 421.900775291409 1262.680496474427 3 421.9009094238281 MULTI HCD FTMS 0 0 0 15003 86608.78125 0.3993666000858972 3 -0.07187652587890625 5 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 20.453626601364224 0.18364154288633264 1 [QP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}{I|L} 10 4 + 46.923 0 0 3.7162 3.7162 89.129 0 0 0 4.259687322722812 28.423552944845483 4.259687322722812 46.923487412610356 0 1 0 0.4247425010840047 0 [QP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}{I|L} 3.7162 - 78 NaN NaN 131782.8 NaN 11837 3169 15003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15009 65.407 NaN 1594200 35 0 457560 0.261 + 24696 RYLTVAAVF 9 79 520.3002137463006 1038.5858745594012 2 520.8019409179688 MULTI HCD FTMS 0 0 0 15003 205693.875 0.01546896849064547 56 -1.4723129272460938 6 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 29.081581746732265 0.1154664336125038 1 AAV{M(Oxidation (M))|F} 4 5 47.735 0 0 4.5962 0 0 632.3661541089934 0 632.3661541089934 0 40.74539712336197 0 0 0 1.579689690656103 0 0 0 + AAV{M(Oxidation (M))|F} 4.5962 + + 38 NaN NaN 326156.2 NaN 11838 3169 15003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15011 65.411 NaN 3913700 35 0 631160 0.327 + 5165 FFDAELSQM 9 95 552.2390895993532 1102.4636262655063 2 552.2396850585938 MULTI HCD FTMS 0 0 0 15010 2267911.5 0.6596781107687273 10 -0.2516021728515625 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.988 2.8432 0.96662 8.9788 8.9788 68.281 0 0 0 0 59.61191957698767 0 0 0 3.1989700043360187 0 1.7614393726401687 0.9698565171985375 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9788 + + 3729 + NaN NaN 672704.3 NaN 11839 3170 15010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15012 65.416 NaN 2211200 35 0 954660 0.263 + 34844 YRQHVKMSII 10 54 425.57271711330554 1273.6963219401166 3 425.5730895996094 MULTI HCD FTMS 0 0 0 15010 1000622.5 0.8302339927789687 3 -0.07526397705078125 2 Unmodified _YRQHVKMSII_ REV__tr|U7T0G4|U7T0G4_FUSNUGlycine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glySPE=3SV=1 10.898955630103616 0.4091668631510381 1 YY 2 -1 39.693 0 0 3.1163 0 0 0 944.5480070490925 944.5480070490925 8.723637474483468 0 0 0 0 0.3494850021680094 2 0 0 YY 3.1163 - 20 + NaN NaN 420690 NaN 11840 3170 15010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15013 65.419 NaN 2071900 35 0 209170 0.261 + 27303 SYQKVIELF 9 113 563.8106306773733 1125.6067084215465 2 563.8109130859375 MULTI HCD FTMS 0 0 0 15010 976177.9375 0.34017657818083136 7 -0.18331146240234375 3 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 103.82355648334675 0.003950725192926219 1 {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F} 9 0 + 76.405 0 0 6.7879 6.7879 85.719 0 0 0 2.6418211816987736 6.89983094072403 2.6418211816987736 2.6418211816987736 0 3.110924374808178 0 0.2614393726401688 0.3807196863200844 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{I|L}{M(Oxidation (M))|F};[YQ]SKV{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V[YT]{I|L}E{I|L}{M(Oxidation (M))|F};[YQ]KSV{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}NK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}V[YT]E{I|L}{M(Oxidation (M))|F} 6.7879;6.5532;6.1454;5.9698;5.7504;5.5006;5.3845;5.1498;5.1259;4.8194 +;-;-;-;-;-;-;-;-;- + 1864 NaN NaN 404794.3 NaN 11841 3170 15010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15014 65.423 NaN 1284800 35 0 116040 0.261 + 9809 HYNWLIYHL 9 87 629.8219077281749 1257.6292625231497 2 629.822265625 MULTI HCD FTMS 0 0 0 15010 782934.625 0.6830250503778489 7 -0.18331146240234375 4 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 114.6490535036381 0.0021834323520089267 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 108.38 0 0 8.618 8.618 90.977 0 0 0 13.534087492996392 7.7815125038364386 7.7815125038364386 7.7815125038364386 0 2.774227503252014 1.5228787452803376 0 1.3807196863200843 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}NW{I|L}Y{I|L}{I|L}H;{[WN]|[YH]}NW{I|L}{I|L}{I|L}YH;{[WN]|[YH]}GGW{I|L}Y{I|L}H{I|L};HYNW{I|L}{I|L}{I|L}YH 8.618;7.9992;7.8858;7.5631;7.5418;7.267;6.9444;6.9297;6.8309;6.7799 +;-;-;-;+;-;-;-;-;- + 1010 NaN NaN 284397.3 NaN 11842 3170 15010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15015 65.426 NaN 447610 35 0 62934 0.263 + 25225 SAQIELDSL 9 58 488.2531217123919 974.4916904915838 2 488.2533264160156 MULTI HCD FTMS 0 0 0 15010 260202.8125 1 0 0 5 Unmodified _SAQIELDSL_ REV__ENSG00000162086|ENST00000669516|ZNF75A;REV__nc|ENSG00000162086|Q96N20|ZNF75A 92.65332237495696 0.004456439685314431 1 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L} 9 -1 + 65.855 0 0 6.7579 6.7579 85.819 0 0 0 3.0102999566398125 16.478174818886373 3.0102999566398125 3.0102999566398125 0 1.2614393726401687 0 1.4489700043360187 0.28872548999643577 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[TV]|[{I|L}S]}D{[NV]|[RG]}{I|L}DS{I|L};{[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[TV]|[{I|L}S]}D{I|L}{[NV]|[RG]}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};{[TV]|[{I|L}S]}D{I|L}E[QA]S{I|L} 6.7579;6.449;6.0749;5.7895;5.4806;4.5316;4.2227 -;-;-;-;-;-;- 160 NaN NaN 148196.1 NaN 11843 3170 15010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15016 65.429 NaN 520200 35 0 87867 0.261 + 24558 RYLLTQELL 9 89 574.8370493709648 1147.6595458087295 2 574.8372802734375 MULTI HCD FTMS 0 0 0 15010 184377.5 0.8119252868224799 -2 0.052276611328125 6 Unmodified _RYLLTQELL_ ENSG00000103335|ENST00000301015|PIEZO1 47.7319792270244 0.034743597693959835 1 [YR]{I|L}{I|L}TQE{I|L}{I|L} 9 0 + 75.829 0 0 6.6073 6.6073 89.069 0 0 0 4.232712163289278 65.37167390053439 4.232712163289278 9.208187539523749 0 2.2302046884880937 0 0.6694451763165201 0 + + [YR]{I|L}{I|L}TQE{I|L}{I|L};[YR]{I|L}{I|L}T[AG]E{I|L}{I|L} 6.6073;5.8049 +;- + 483 NaN NaN 169391.7 NaN 11844 3170 15010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15018 65.434 NaN 634420 35 0 92496 0.327 -1 KMDMKKLKQSM 11 88 467.24166873157225 1398.7031767949168 3 467.24188232421875 MULTI HCD FTMS 0 0 0 15017 148553.515625 0.3641824230673645 9 -0.22872161865234375 1 2 Oxidation (M) _KM(Oxidation (M))DM(Oxidation (M))KKLKQSM_ ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH 2.4347853303010236 0.4082425251555256 1 V[QT]{I|L}{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 18.345 0 0 1.3116 0 0 721.3605824201187 0 721.3605824201187 0 0.2853716820872165 0 0 0 0.4247425010840047 0 0 0.3807196863200844 V[QT]{I|L}{[MS]|[{M(Oxidation (M))|F}A]} 1.3116 - 77 NaN NaN 178400.1 NaN 11845 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15019 65.439 NaN 156830 35 0 25632 0.261 + 8433 GYSIHTYLW 9 48 570.2795403233529 1138.5445277135057 2 570.2796630859375 MULTI HCD FTMS 0 0 0 15017 38802.234375 0.2978270324472094 5 -0.130889892578125 2 Unmodified _GYSIHTYLW_ ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-2|GBA1;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1 16.942295170755138 0.21397866736869717 1 {I|L}W 2 7 30.969 0 0 2.7201 0 0 821.3698278617463 0 821.3698278617463 0 23.979400086720375 0 0 0 1 0 0 0 + {I|L}W 2.7201 + + 22 + NaN NaN 110041.2 NaN 11846 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15020 65.442 NaN 120730 35 0 25134 0.262 + -1 DAMYQALL 8 51 470.7256558419405 NaN 0 470.741455078125 PEAK HCD FTMS 0 0 0 15017 19252.984375 0.897331299236449 1 -0.02618408203125 3 Oxidation (M) _DAM(Oxidation (M))YQALL_ REV__ENSG00000148341|ENST00000372564|SH3GLB2;REV__nc|ENSG00000148341|Q9NR46-2|SH3GLB2 9.347437153973935 0.38822285293237185 1 H{I|L} 2 -1 9.464 0 0 1.0074 0 0 132.07923452028916 554.1875460017991 686.2667805220883 0 0 0 0 0 0 0 0 0 H{I|L} 1.0074 - 18 + NaN NaN 99265.8 NaN 11847 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15021 65.446 NaN 338900 35 0 39161 0.261 + 35578 YYIFFLFF 8 69 580.296129155658 NaN 0 580.31103515625 PEAK HCD FTMS 0 0 0 15017 31288.505859375 0.9259708937084419 -6 0.16652679443359375 4 Unmodified _YYIFFLFF_ ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13 24.20995872069341 0.3821035703978675 1 N{I|L}S 3 7 17.747 0 0 1.5318 0 0 212.0753311334998 629.3422163028752 841.4175474363749 0 0 0 0 0 0 0 0.3054621874040891 0 N{I|L}S 1.5318 - 53 + NaN NaN 147916.9 NaN 11848 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15022 65.449 NaN 296710 35 0 20159 0.261 -1 IGDEPCQII 9 55 522.7563716943328 NaN 0 522.7565307617188 PEAK HCD FTMS 0 0 0 15017 19788.01171875 0.38202690438760006 1 -0.02618408203125 5 Carbamidomethyl (C) _IGDEPC(Carbamidomethyl (C))QII_ ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant 13.042465956692817 0.23204487237355156 1 {M(Oxidation (M))|F}N{I|L}D 4 -1 19.725 0 0 1.8903 0 0 116.08114311534514 435.17217540860344 551.2533185239486 0 0 0 0 0 0 0 0 0.3807196863200844 {M(Oxidation (M))|F}N{I|L}D 1.8903 - 61 + NaN NaN 132256.6 NaN 11849 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15023 65.452 NaN 184110 35 0 10710 0.261 + 14074 KYVTVYNLI 9 66 556.8217285629445 NaN 0 556.82177734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KYVTVYNLI_ ENSG00000138592|ENST00000307179|USP8;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;USP8-MYEF2|1|fusion 28.494509381512117 0.13038125526484795 1 {I|L}SRC 4 9 17.868 0 0 1.6074 0 0 131.09719002708624 518.2616671197874 649.3588571468736 0 0 0 0 0 0.7742275032520141 0 0.3494850021680094 0 {I|L}SRC 1.6074 - 262 + NaN NaN 112485.3 NaN 11850 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15024 65.456 NaN 82700 35 0 17867 0.264 -1 EGVICLTHRQ 10 41 404.87657692325666 1211.60790136997 3 404.877197265625 MULTI HCD FTMS 0 0 0 15017 11651.541015625 0.3189034120097912 1 -0.02618408203125 7 Carbamidomethyl (C) _EGVIC(Carbamidomethyl (C))LTHRQ_ ENSG00000182472|ENST00000328867|CAPN12 3.5870582119611467 0.4563168352879256 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 92792.4 NaN 11851 3171 15017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15026 65.461 NaN 1588000 35 0 207450 0.326 + 32118 VYSFGFERL 9 113 559.287407210511 1116.560261487822 2 559.2694091796875 MULTI HCD FTMS 0 0 0 15025 120757.4765625 0.08919217595769709 16 -0.4349212646484375 1 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 36.506200033944 0.08138327636155518 1 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 9 5 55.305 0 0 4.9532 0 0 0 128.10882526492358 128.10882526492358 28.416126882405717 0 0 0 0 0.8807196863200843 1.5228787452803376 0.5629529932484498 1.579689690656103 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 4.9532 - 4875 NaN NaN 327930.3 NaN 11852 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15027 65.465 NaN 328290 35 0 29793 0.261 + 11459 IYQFIMDRF 9 72 624.8075114680809 1247.6004700029616 2 624.8076782226562 MULTI HCD FTMS 0 0 0 15025 127623.046875 0.47536049207314934 10 -0.26146697998046875 2 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 69.33821966488729 0.009302356455414924 1 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 87.674 0 0 7.0274 7.0274 84.947 0 0 0 0.10213141451892227 0.10213141451892227 0.10213141451892227 0.10213141451892227 0 2.305462187404089 2 0 0.3807196863200844 + + [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]D;[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ{M(Oxidation (M))|F}[NP]{[HG]|PP}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]D 7.0274;7.0192;6.2893;6.2811;5.4033;5.2966;4.8824;4.859;4.6462;4.5585 +;+;-;-;-;-;-;-;-;- + 479 NaN NaN 139978.9 NaN 11853 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15028 65.468 NaN 403250 35 0 68441 0.261 + 5753 FPAGYMYPSM 10 73 590.2457738184258 1178.4769947036516 2 590.2461547851562 MULTI HCD FTMS 0 0 0 15025 139547.296875 0.6411355825726796 4 -0.104705810546875 3 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]MYPS{M(Oxidation (M))|F} 9 2 + 54.161 0 0 4.5958 4.5958 82.489 0 0 0 2.662574822053543 28.46910013008056 2.662574822053543 3.8013692957795016 0 1.805462187404089 0 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]MYPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]M[VS]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VYW{M(Oxidation (M))|F}PS{M(Oxidation (M))|F};[WY][VS]MYPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]M[VS]PCM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PS{M(Oxidation (M))|F};[WY]YM[VS]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PY[TA]YPS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY{[DA]|[EG]}{M(Oxidation (M))|F}PS{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F} 4.5958;4.2732;4.1275;4.0349;4.0178;4.0117;3.8316;3.5011;3.3461;3.2474 -;-;-;-;-;-;-;-;-;- 541 NaN NaN 144872.5 NaN 11854 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15029 65.472 NaN 163010 35 0 41895 0.264 + -1 QLEARICDVI 10 42 406.21659614654493 1215.6279590398349 3 406.2170715332031 MULTI HCD FTMS 0 0 0 15025 40382.5703125 0.07095690121433258 24 -0.660308837890625 4 Carbamidomethyl (C) _QLEARIC(Carbamidomethyl (C))DVI_ REV__ENSG00000166685|ENST00000299886|COG1 5.783430956126388 0.4446910851847804 1 Y{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.4857 0 0 887.4877902637064 0 887.4877902637064 0 27.452315297631706 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F} 2.4857 - 14 NaN NaN 100852.5 NaN 11855 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15030 65.475 NaN 60735 35 0 10241 0.261 + 23012 RATPHWSL 8 26 484.25843313558187 966.5023133379638 2 484.25885009765625 MULTI HCD FTMS 0 0 0 15025 45965.18359375 0.6699541642464726 3 -0.075225830078125 5 Unmodified _RATPHWSL_ REV__ENSG00000167549|ENST00000388767|CORO6;REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF;REV__nc|ENSG00000167549|Q6QEF8|CORO6 4.3292370932331545 0.5355693454741696 1 WS{I|L} 3 -1 13.952 0 0 1.4436 0 0 562.2946239842513 0 562.2946239842513 0 13.952424927286843 0 0 0 0.3494850021680094 0 0 0 WS{I|L} 1.4436 + + 3 + NaN NaN 89594.4 NaN 11856 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15031 65.478 NaN 155430 35 0 14843 0.261 -1 SFDGIIAMM 9 45 508.7247305309564 1015.4349081287128 2 508.72467041015625 MULTI HCD FTMS 0 0 0 15025 42270.28125 0.7122811655164352 -12 0.33685302734375 6 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 21.74664581756881 0.17247014374749275 1 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 50.126 0 0 4.9364 0 0 331.15696913886876 0 331.15696913886876 0 44.64123782136497 0 0 0 1 0 0.3494850021680094 0 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9364 - 42 NaN NaN 118411.6 NaN 11857 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15032 65.482 NaN 94837 35 0 8102.6 0.261 -1 0 47 439.98658399926774 NaN 0 439.53326416015625 PEAK HCD FTMS 0 0 0 15025 5688.4091796875 0.8472377359066878 -1 0.02618408203125 7 NaN NaN 1 Y 1 -1 6.9897 0 0 0.79613 0 0 294.709665945998 417.16071497135005 711.870380917348 0 0 0 0 0 0 0 0 0 Y 0.79613 - 2 + NaN NaN 109756.1 NaN 11858 3172 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15034 65.487 NaN 1470600 35 0 137630 0.327 -1 0 96 502.23069998583856 1002.4468470384771 2 502.23150634765625 MULTI HCD FTMS 0 0 0 15033 833046.125 0.8326585224577959 -12 0.33353424072265625 1 NaN NaN 1 D{M(Oxidation (M))|F}D{I|L}H{I|L} 6 -1 64.162 0 0 6.4005 0 0 244.08816725898595 0 244.08816725898595 0 40.97418457616534 0 0 0 2.2302046884880937 0 1.610924374808178 0 D{M(Oxidation (M))|F}D{I|L}H{I|L} 6.4005 - 610 NaN NaN 309578.8 NaN 11859 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15035 65.491 NaN 1204200 35 0 334830 0.261 + -1 GFIICWLIMAK 11 70 456.5784833434032 1366.7136206304097 3 456.5787658691406 MULTI HCD FTMS 0 0 0 15033 397270.125 0.14636008744318932 10 -0.25806427001953125 2 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 7.0370850670814 0.388058401935362 1 {I|L}ND[YQ]{I|L}{I|L}W 8 -1 66.732 0 0 4.8827 0 0 303.1699493820072 0 303.1699493820072 0 57.1277502416482 0 0 0 1.8807196863200843 0 0.3807196863200844 0.7742275032520141 {I|L}ND[YQ]{I|L}{I|L}W 4.8827 - 201 NaN NaN 268073.1 NaN 11860 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15036 65.495 NaN 149920 35 0 33840 0.261 -1 0 36 496.2764316638347 990.5383103944695 2 496.27703857421875 MULTI HCD FTMS 0 0 0 15033 77732.15625 0.28330342474927356 7 -0.17633819580078125 3 NaN NaN 1 Q{I|L}{I|L} 3 -1 40.445 0 0 4.0832 0 0 618.3046742169937 0 618.3046742169937 0 40.35666875892183 0 0 0 1 0 0 0.4247425010840047 Q{I|L}{I|L} 4.0832 - 21 NaN NaN 113473.1 NaN 11861 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15037 65.498 NaN 444970 35 0 62932 0.261 + 19475 NPVSQVEIL 9 70 499.7793491024618 997.5441452717237 2 499.7796325683594 MULTI HCD FTMS 0 0 0 15033 240164.515625 0.8083245518055098 -3 0.07526397705078125 4 Unmodified _NPVSQVEIL_ ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|2|fusion;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|4|fusion;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6 22.65808497894818 0.16459551161911185 1 D{I|L}GVE{I|L}{I|L} 7 5 36.992 0 0 3.7083 0 0 240.10841567207189 0 240.10841567207189 0 19.51798866546774 0 0 0 1.2614393726401687 0 0 0 D{I|L}GVE{I|L}{I|L} 3.7083 - 290 NaN NaN 161425.8 NaN 11862 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15038 65.501 NaN 170010 35 0 17787 0.261 -1 GTLLEITAYYM 11 52 645.8167747745365 1289.618996615873 2 645.8172607421875 MULTI HCD FTMS 0 0 0 15033 40290.34375 0.39826215875319876 8 -0.202484130859375 5 Oxidation (M) _GTLLEITAYYM(Oxidation (M))_ CON__ENSEMBL:ENSBTAP00000013050 5.731851221503515 0.39378271418728467 1 {I|L} 1 -1 6.9897 0 0 0.542 0 0 663.2577209605803 510.25708948306874 1173.514810443649 0 0 0 0 0 0 0 0 0 {I|L} 0.542 + + 14 + NaN NaN 108351.8 NaN 11863 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15039 65.505 NaN 166870 35 0 12039 0.263 + 55 AAVYVMREL 9 61 526.2820344041008 NaN 0 526.2814331054688 PEAK HCD FTMS 0 0 0 15033 46597.95703125 0.921685729060759 -1 0.0261993408203125 6 Unmodified _AAVYVMREL_ REV__ENSG00000070882|ENST00000313367|OSBPL3;REV__nc|ENSG00000070882|Q9H4L5-2|OSBPL3;REV__nc|ENSG00000070882|Q9H4L5-3|OSBPL3;REV__nc|ENSG00000070882|Q9H4L5-4|OSBPL3 14.838274106304384 0.2220448417561729 1 RW 2 -1 17.959 0 0 1.7095 0 0 490.23275669707033 215.10390649967033 705.3366631967407 0 0 0 0 0 1 0 0 0 RW 1.7095 - 29 + NaN NaN 106569.8 NaN 11864 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15040 65.508 NaN 161340 35 0 12117 0.261 + 25027 RYYLKFNFL 9 53 632.3475013608723 1262.6804497885446 2 632.3474731445312 MULTI HCD FTMS 0 0 0 15033 35792.3671875 0.304020846963294 8 -0.202484130859375 7 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 10.823927491677226 0.26684000660059787 1 YYR{I|L}K{M(Oxidation (M))|F} 6 5 14.103 0 0 1.1169 0 0 0 389.1822557790321 389.1822557790321 6.03076880544919 0 0 0 0 0 0 0 0 YYR{I|L}K{M(Oxidation (M))|F} 1.1169 - 101 NaN NaN 103997 NaN 11865 3173 15033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15042 65.513 NaN 2441200 35 0 604750 0.327 -1 0 103 604.7680411660131 1207.521529398826 2 604.7685546875 MULTI HCD FTMS 0 0 0 15041 1110189.125 0.3483608023422175 14 -0.38260650634765625 1 NaN NaN 1 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 77.621 0 0 6.4282 0 0 291.1583424298844 0 291.1583424298844 0 46.32902089021309 0 0 0 2.473197507588033 0 0.6549471895720984 1.1861818737241734 {M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.4282 - 3162 NaN NaN 472863.7 NaN 11866 3174 15041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15043 65.517 NaN 1302600 35 0 135400 0.262 + 30650 VPDPKELLL 9 81 512.3077278541672 1022.6009027751344 2 512.3079833984375 MULTI HCD FTMS 0 0 0 15041 400760.90625 0.5231571084852435 4 -0.0914306640625 2 Unmodified _VPDPKELLL_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-3|TACC2 42.312485326615175 0.05472917415473307 1 [VP]DPKE{I|L}{I|L}{I|L} 9 0 + 45.601 0 0 4.4593 4.4593 80.926 0 0 0 0.3360033134070761 17.543096649567076 0.3360033134070761 0.9691001300805624 0 1.3539171939081172 1.5228787452803376 0 0 + + [VP]DPKE{I|L}{I|L}{I|L};[VP]DPK{I|L}E{I|L}{I|L};[DP]VPKE{I|L}{I|L}{I|L};[DP]VPK{I|L}E{I|L}{I|L};{I|L}{I|L}E[KP]DPV{I|L};[YV]{I|L}[KS]{[MG]|[TS]}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[KP]DPV{I|L};{I|L}{I|L}E[KP]V[DP]{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[KP]V[DP]{I|L};{I|L}{I|L}E[KP]V{I|L}[DP] 4.4593;4.3645;4.3039;4.2092;2.3287;2.1078;1.7769;0.96161;0.40981;0.32283 +;-;-;-;-;-;-;-;-;- + 572 NaN NaN 286856.5 NaN 11867 3174 15041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15044 65.521 NaN 536110 35 0 30635 0.261 + 27173 SYNNFFRMF 9 80 621.2738121112648 1240.5330712893294 2 621.27490234375 MULTI HCD FTMS 0 0 0 15041 263615.65625 0.05215497064627072 -24 0.6547775268554688 3 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 106.94017166704063 0.003441928997083001 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 68.325 0 0 5.5077 0 0 63.99881744210945 0 63.99881744210945 0 41.32552069236061 0 0 0 2.368415180652539 0 0 0.3494850021680094 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5077 - 1180 + NaN NaN 171580.4 NaN 11868 3174 15041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15045 65.524 NaN 536190 35 0 67477 0.261 -1 0 87 608.8500402887187 1215.6855276442373 2 608.8506469726562 MULTI HCD FTMS 0 0 0 15041 198515.28125 0.19712109303920694 8 -0.2091522216796875 4 NaN NaN 1 K{I|L}V{I|L}NPE 7 -1 64.545 0 0 5.3093 0 0 404.18675429511876 0 404.18675429511876 0 43.275238674479155 0 0 0 2.4604093769761874 0 0 0 K{I|L}V{I|L}NPE 5.3093 - 3564 NaN NaN 167895.7 NaN 11869 3174 15041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15046 65.528 NaN 495990 35 0 53584 0.261 + 11751 KDMQEYFDF 9 73 611.7574396651034 1221.5003263970068 2 611.7572021484375 MULTI HCD FTMS 0 0 0 15041 80270.859375 0.37621515906887804 14 -0.38260650634765625 5 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 22.736283301280096 0.1639198954644489 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 46.623 0 0 3.8168 3.8168 83.749 0 0 0 4.884381005764311 11.936974992327123 4.884381005764311 9.164539485499247 0 2.079689690656103 0 0 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}KC[TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EKC[TA]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[{I|L}T]C[DG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[{I|L}T]C{M(Oxidation (M))|F}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}{[QV]|[N{I|L}]|[RA]|[KV]}A{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[PS]A{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F} 3.8168;3.0666;2.7956;2.6249;1.8187;0.66166;0.59794;0.54463;0.025715 -;-;-;-;-;-;-;-;- 906 NaN NaN 152898.3 NaN 11870 3174 15041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15047 65.531 NaN 814680 35 0 140870 0.261 + 31576 VYIEAAIRF 9 92 541.3057207962513 1080.5968886593025 2 541.3062133789062 MULTI HCD FTMS 0 0 0 15041 177950.0625 0.35721886542023606 -6 0.153656005859375 6 Unmodified _VYIEAAIRF_ ENSG00000204178|ENST00000374343|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1 67.83816525789305 0.009787749748478139 1 [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F} 9 0 + 103.59 0 0 9.5867 9.5867 94.414 0 0 0 2.243012119929091 82.67606240177031 2.243012119929091 9.771212547196626 0 3.5 1.6989700043360187 0 0 + + [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}EAAR{I|L}{M(Oxidation (M))|F};[YV]{I|L}EAAR{M(Oxidation (M))|F}{I|L};[YV][DV]VA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}EVR[VG]{M(Oxidation (M))|F};[YV]{I|L}EV[VG]R{M(Oxidation (M))|F};[YV]{I|L}EA[R{I|L}]A{M(Oxidation (M))|F};[YV]{I|L}[RD]{I|L}[VG]{M(Oxidation (M))|F};[YV][DV]VAR{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV]AA{I|L}R{M(Oxidation (M))|F} 9.5867;8.6825;7.7782;6.8364;6.7012;6.7012;6.3689;6.3052;5.9322;5.8801 +;-;-;-;-;-;-;-;-;- + 1646 NaN NaN 227276.9 NaN 11871 3174 15041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15049 65.536 NaN 1065600 35 0 126790 0.327 + 4987 FAYIKYDNEL 10 97 638.3162774777584 1274.6180020223167 2 638.3165893554688 MULTI HCD FTMS 0 0 0 15048 651362.75 0.7770899261765599 3 -0.06851959228515625 1 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 32.78568957990786 0.20801173326193015 1 {[MS]|[{M(Oxidation (M))|F}A]}YDGKDY{I|L}A{I|L} 11 6 + 89.945 0 0 7.0567 7.0567 91.566 0 0 0 5.862435673934272 44.75802817529549 5.862435673934272 12.513487579716767 0 2.579689690656103 0 0.9436726795685342 0 {[MS]|[{M(Oxidation (M))|F}A]}YDGKDY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKDYA{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}YA{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}AY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A{[CA]|SS}A{M(Oxidation (M))|F}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKA{I|L}DY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}{M(Oxidation (M))|F}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YA[QT]DY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}S{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A[QT]YA{I|L} 7.0567;6.0749;6.0591;5.1945;5.1637;5.1185;5.0784;5.0542;4.9033;4.7831 -;-;-;-;-;-;-;-;-;- 9219 NaN NaN 247052.7 NaN 11872 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15050 65.54 NaN 789850 35 0 82852 0.261 + 13888 KYQELQVLF 9 73 584.3238319932752 1166.6331110533504 2 584.3243408203125 MULTI HCD FTMS 0 0 0 15048 377292 0.6113016856215591 3 -0.06851959228515625 2 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 55.50274090549119 0.023872834264864425 1 [YQ]KE{I|L}QV{I|L}{M(Oxidation (M))|F} 9 2 + 73.567 0 0 6.3059 6.3059 87.43 0 0 0 2.1476427151925037 44.26985621489237 2.1476427151925037 8.750612633917001 0 2.305462187404089 0 0 1.066901560044258 [YQ]KE{I|L}QV{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[SG]E{I|L}QV{I|L}{M(Oxidation (M))|F};[YQ]KE{I|L}[AG]V{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[SG]E{I|L}[AG]V{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EEKQV{I|L}{M(Oxidation (M))|F};[YQ]K{[DS]|[MA]|[CV]|TT}[PA]V{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EEK[AG]V{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[YQ]{[QN]|[E{I|L}]|[KN]}K{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[YQ]{[QN]|[E{I|L}]|[KN]}{I|L}K{M(Oxidation (M))|F} 6.3059;5.5558;5.5166;4.7703;4.1531;3.6317;3.3638;1.8396;1.2175 -;-;-;-;-;-;-;-;- 543 NaN NaN 203076.8 NaN 11873 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15051 65.544 NaN 815520 35 0 58501 0.261 + 29086 TYGEIFEKF 9 104 567.2791460627044 1132.5437391922087 2 567.2789916992188 MULTI HCD FTMS 0 0 0 15048 440667.28125 0.017872515548052893 91 -2.3982620239257812 3 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 96.36657018975838 0.004359138328518304 1 [YT]GE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 2 + 54.925 0 0 4.8497 4.8497 82.418 0 0 0 2.9655257433751814 6.444889945534058 2.9655257433751814 2.9655257433751814 0 1.9559771852360797 2 0.8921590589602532 0 [YT]GE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};[YT]GE{[QN]|[E{I|L}]|[KN]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[TA]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}KYM;{[{M(Oxidation (M))|F}C]|[YS]}AE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{M(Oxidation (M))|F}YKM 4.8497;4.5878;4.299;3.9746;3.5179;3.4239;3.3963;3.1821;3.167;3.1266 -;-;-;-;-;-;-;-;-;- 1456 NaN NaN 207181.2 NaN 11874 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15052 65.547 NaN 880680 35 0 90697 0.261 + 13221 KYMDIEFDF 9 84 612.267984504842 1222.521416076484 2 612.2694091796875 MULTI HCD FTMS 0 0 0 15048 386258.875 0.19158483268270388 -8 0.2027740478515625 4 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 100.0907132914201 0.004261551473353346 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 74.223 0 0 6.0713 6.0713 90.08 0 0 0 3.2568864632742844 34.48206988169864 3.2568864632742844 13.697887582883936 0 2.579689690656103 0 1.0044321917401078 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[PA]KD{[SA]|[TG]}D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}[YT]{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}EV[Y{M(Oxidation (M))|F}]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EEV[Y{M(Oxidation (M))|F}]K;{[{M(Oxidation (M))|F}D]|MM}E{I|L}D{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]K;[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K 6.0713;4.9508;2.8119;2.2293;1.6306;1.6108;1.1611;1.1413;1.069;0.85222 +;-;-;-;-;-;-;-;-;- + 2411 NaN NaN 235514.7 NaN 11875 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15053 65.55 NaN 254680 35 0 40535 0.261 + 9097 HPFHILIAL 9 63 530.818618658761 1059.622684384322 2 530.81884765625 MULTI HCD FTMS 0 0 0 15048 62104.140625 0.12988110645416784 15 -0.41503143310546875 5 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 36.466142684027034 0.08156716203802528 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{M(Oxidation (M))|F}{I|L}{I|L}A{I|L} 9 2 + 54.231 0 0 5.1179 5.1179 91.415 0 0 0 11.271818570135324 47.240918700215886 11.271818570135324 54.23061874357607 0 0.805462187404089 0 0.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{M(Oxidation (M))|F}{I|L}{I|L}A{I|L} 5.1179 - 46 NaN NaN 131670.3 NaN 11876 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15054 65.554 NaN 161730 35 0 16330 0.261 -1 SFDGIIAMM 9 53 508.7247305309564 1015.4349081287128 2 508.7254333496094 MULTI HCD FTMS 0 0 0 15048 48906.53515625 0.824106271175195 -9 0.22890472412109375 6 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 16.942295170755138 0.21397866736869717 1 TS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 36.387 0 0 3.5834 0 0 331.1562672345719 0 331.1562672345719 0 29.397737521010825 0 0 0 1 0 0.4247425010840047 0 TS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.5834 - 25 NaN NaN 109272.1 NaN 11877 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15055 65.557 NaN 105840 35 0 9628.6 0.261 -1 DESEPDSMESF 11 40 644.7286482110188 NaN 0 644.729248046875 PEAK HCD FTMS 0 0 0 15048 29301.302734375 0.5950871869322735 8 -0.20903778076171875 7 Oxidation (M) _DESEPDSM(Oxidation (M))ESF_ ENSG00000147642|ENST00000276646|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-5|SYBU 2.735195868890462 0.3343611804837492 1 Q{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.61819 0 0 165.07799850902262 844.2444552057249 1009.3224537147476 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 0.61819 - 5 + NaN NaN 98816.5 NaN 11878 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15056 65.56 NaN 114860 35 0 4546.2 0.262 + 10954 IYDKFIAQL 9 57 555.8132034939672 NaN 0 555.8120727539062 PEAK HCD FTMS 0 0 0 15048 9384.357421875 0.18278720885828767 -2 0.0490264892578125 8 Unmodified _IYDKFIAQL_ ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1 17.11289562659939 0.20677709319598864 1 A 1 8 8.0989 0 0 0.72989 0 0 779.4207967811 256.13019739322505 1035.550994174325 0 0 0 0 0 0.5 0 0 0 + A 0.72989 + + 25 + NaN NaN 104278.9 NaN 11879 3175 15048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15058 65.565 NaN 2639800 35 0 395480 0.327 + 5166 FFDAELSQM 9 90 552.2390895993532 1102.4636262655063 2 552.239501953125 MULTI HCD FTMS 0 0 0 15057 1412072.375 0.410736149364166 16 -0.43767547607421875 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.013 3.7236 1.266 8.8903 8.8903 68.171 0 0 0 0 54.771985519167075 0 0 0 3.2302046884880937 0 1.7856668758921828 0.9049471895720985 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.8903 + + 2076 + NaN NaN 496905.9 NaN 11880 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15059 65.57 NaN 558030 35 0 54587 0.261 + 9810 HYNWLIYHL 9 71 629.8219077281749 1257.6292625231497 2 629.8220825195312 MULTI HCD FTMS 0 0 0 15057 417337.03125 0.3640810326840164 13 -0.35958099365234375 2 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 126.56589448801843 0.0008132384440316759 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 108.69 0 0 8.6428 8.6428 92.456 0 0 0 9.63849499163517 9.63849499163517 9.63849499163517 9.208187539523749 0 2.774227503252014 1.5228787452803376 0 1.4119543704721593 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{I|L}{[WN]|[YH]}YH{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}YH{I|L};[H{I|L}]Y{I|L}{[WN]|[YH]}YH{I|L};{[WN]|[YH]}{I|L}[HV]W[YQ]{I|L};[H{I|L}]Y[HV]W[YQ]{I|L} 8.6428;7.9106;7.8764;7.0139;6.7068;5.879;4.4693;3.3343;2.5908;0.046191 +;-;+;-;-;-;-;-;-;- + 550 NaN NaN 166017.3 NaN 11881 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15060 65.573 NaN 652150 35 0 40590 0.261 + 15079 LMADVVYCPH 10 91 574.2672997166287 1146.5200465000573 2 574.267578125 MULTI HCD FTMS 0 0 0 15057 323341.09375 1 0 0 3 Unmodified _LMADVVYCPH_ ENST00000427378.1_1_7:134813580-134814228:+|nuORF 20.453626601364224 0.3197956946484955 1 {I|L}MAH{I|L}{I|L}D{I|L} 8 7 57.767 0 0 5.0385 0 0 0 237.0009707086547 237.0009707086547 31.569561483418326 0 0 0 0 1.8098943791441968 1.0969100130080565 0.7887254899964358 0 {I|L}MAH{I|L}{I|L}D{I|L} 5.0385 - 414 + NaN NaN 193450.5 NaN 11882 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15061 65.576 NaN 490600 35 0 94419 0.261 + 11677 IYYFKANVF 9 84 582.8078701202747 1163.6011873073494 2 582.8079833984375 MULTI HCD FTMS 0 0 0 15057 194609.921875 1 0 0 4 Unmodified _IYYFKANVF_ ENSG00000111229|ENST00000228825|ARPC3 85.35673624503755 0.00464763827098139 1 [Y{I|L}]YK{M(Oxidation (M))|F}{[QG]|[NA]}V{M(Oxidation (M))|F} 9 2 + 70.384 0 0 6.0488 6.0488 83.339 0 0 0 18.203709116377667 43.00112385103738 18.203709116377667 0.4845500650402812 0 1.805462187404089 1.6989700043360187 0 0.4247425010840047 [Y{I|L}]YK{M(Oxidation (M))|F}{[QG]|[NA]}V{M(Oxidation (M))|F};[Y{I|L}]Y{M(Oxidation (M))|F}K{[QG]|[NA]}V{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}D{I|L}{[SA]|[TG]}[RP]V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}V[Q{I|L}]S[QP]K{M(Oxidation (M))|F} 6.0488;6.0072;2.158;1.6938 -;+;-;- + 506 NaN NaN 165906.3 NaN 11883 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15062 65.58 NaN 140260 35 0 28559 0.264 + 30081 VFTSNNHIEEL 11 41 434.8822789067168 NaN 0 434.8819580078125 PEAK HCD FTMS 0 0 0 15057 53172.1484375 0.6366046343568872 -32 0.8640899658203125 5 Unmodified _VFTSNNHIEEL_ REV__GJC1|p.H16N|1|0.39|ENSG00000182963|chr17:44805772-44805772|G/T|missense_variant 2.4347853303010236 0.3352133586680373 1 {I|L} 1 -1 1.5938 0 0 0.18367 0 0 434.0056944327711 317.64533411197505 751.6510285447462 0 0 0 0 0 0 0 0 0 {I|L} 0.18367 + + 1 + NaN NaN 94548 NaN 11884 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15063 65.583 NaN 145980 35 0 24461 0.261 + 10732 IQYRKQSMPL 10 52 421.900775291409 1262.680496474427 3 421.9014587402344 MULTI HCD FTMS 0 0 0 15057 34328.47265625 0.15829394217307788 10 -0.27801513671875 6 Unmodified _IQYRKQSMPL_ GABRB3|p.R409L|1|0.26|ENSG00000166206|chr15:26547989-26547989|C/A|missense_variant 6.2057823575117 0.44245551207394906 1 {I|L} 1 9 19.604 0 0 1.5526 0 0 1131.585737418566 0 1131.585737418566 0 3.150443574641031 0 0 0 0.5 0 0 0 + {I|L} 1.5526 + + 9 + NaN NaN 97897.7 NaN 11885 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15064 65.587 NaN 109830 35 0 17939 0.261 + 4365 EWLNKFNTF 9 55 599.7979469565944 1197.5813409799887 2 599.7999877929688 MULTI HCD FTMS 0 0 0 15057 43440.64453125 0.9714759661402236 -2 0.05239105224609375 7 Unmodified _EWLNKFNTF_ ENSG00000136878|ENST00000372429|USP20 5.296884461304476 0.3108627248283497 1 N[{M(Oxidation (M))|F}T] 3 6 8.072 0 0 0.67402 0 0 817.4128056790106 0 817.4128056790106 0 1.0822685886482493 0 0 0 0 0 0 0 + N[{M(Oxidation (M))|F}T] 0.67402 + + 35 + NaN NaN 103614.1 NaN 11886 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15065 65.59 NaN 92059 35 0 15049 0.263 -1 PIVKNPFM 8 40 481.2618441267151 NaN 0 481.26202392578125 PEAK HCD FTMS 0 0 0 15057 23284.765625 0.33313110038049454 20 -0.55560302734375 8 Oxidation (M) _PIVKNPFM(Oxidation (M))_ ENSG00000079435|ENST00000244289|LIPE;nc|ENSG00000079435|Q05469-2|LIPE 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100243.7 NaN 11887 3176 15057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15067 65.595 NaN 219100 35 0 9609.3 0.327 + -1 CENEENRCC 9 69 578.6947674737232 1155.3749820142464 2 578.6951293945312 MULTI HCD FTMS 0 0 0 15066 36401.94921875 0.3249999703559428 11 -0.3006744384765625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))ENEENRCC_ REV__ENSG00000149090|ENST00000619888|PAMR1;REV__ENST00000534803.1_1_11:35474916-35547133:-|nuORF;REV__nc|ENSG00000149090|Q6UXH9-2|PAMR1;REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1 1.4819007175156935 0.3397831423917744 1 {I|L} 1 -1 5.4846 0 0 0.4747 0 0 131.90790333850742 907.3562105768186 1039.264113915326 0 0 0 0 0 0 0 0 0 {I|L} 0.4747 - 9 + NaN NaN 118125.4 NaN 11888 3177 15066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15068 65.599 NaN 154590 35 0 21028 0.261 + 4366 EWLNKFNTF 9 52 599.7979469565944 1197.5813409799887 2 599.7974853515625 MULTI HCD FTMS 0 0 0 15066 11303.861328125 0.25279159007310786 -1 0.029541015625 2 Unmodified _EWLNKFNTF_ ENSG00000136878|ENST00000372429|USP20 5.296884461304476 0.3108627248283497 1 {[CP]|[EA]}D{I|L}N 5 7 14.437 0 0 1.2055 0 0 0 652.3097017877561 652.3097017877561 5.484550065040279 0 0 0 0 0 0 0 0 {[CP]|[EA]}D{I|L}N 1.2055 - 31 + NaN NaN 107230.7 NaN 11889 3177 15066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15070 65.604 NaN 1600700 35 0 158150 0.327 -1 0 100 502.23069998583856 1002.4468470384771 2 502.23150634765625 MULTI HCD FTMS 0 0 0 15069 842339.875 0.8419479482300989 -7 0.16992950439453125 1 NaN NaN 1 D{M(Oxidation (M))|F}D{I|L}H{I|L} 6 -1 58.982 0 0 5.8838 0 0 244.08816725898595 0 244.08816725898595 0 32.68085455379329 0 0 0 2.1549471895720984 0 1.610924374808178 0 D{M(Oxidation (M))|F}D{I|L}H{I|L} 5.8838 - 726 NaN NaN 342793.6 NaN 11890 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15071 65.608 NaN 1150100 35 0 82374 0.261 + 32247 VYTVVDEMF 9 102 559.757145713297 1117.4997384933938 2 559.7574462890625 MULTI HCD FTMS 0 0 0 15069 293101.625 0.614549861692321 3 -0.08493804931640625 2 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 131.29775728308752 0.0005262696486345744 1 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 70.023 0 0 6.266 6.266 87.123 0 0 0 19.76437805794918 23.608310774309572 19.76437805794918 8.111206103324733 0 2.0669015600442577 1.5228787452803376 1.7803695511246982 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]S{I|L}[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{I|L}[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]T[MD]{I|L}{[ET]|[MV]}{M(Oxidation (M))|F} 6.266;5.5402;3.6906;1.9539 +;-;-;- + 2599 NaN NaN 255089.5 NaN 11891 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15072 65.612 NaN 562400 35 0 71729 0.261 + 5754 FPAGYMYPSM 10 88 590.2457738184258 1178.4769947036516 2 590.24658203125 MULTI HCD FTMS 0 0 0 15069 157305.25 0.7227226564684469 10 -0.29117584228515625 3 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 1 MYPS{M(Oxidation (M))|F} 5 5 42.797 0 0 3.6315 0 0 535.2429620814612 0 535.2429620814612 0 22.26256121692286 0 0 0 1.7134679910804405 0 0 0 + MYPS{M(Oxidation (M))|F} 3.6315 + + 443 NaN NaN 184269.1 NaN 11892 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15073 65.615 NaN 289030 35 0 22963 0.261 + 11460 IYQFIMDRF 9 67 624.8075114680809 1247.6004700029616 2 624.8077392578125 MULTI HCD FTMS 0 0 0 15069 114413.5625 0.42615882241952646 16 -0.457672119140625 4 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 55.23464941255904 0.024247875903973527 1 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 84.389 0 0 6.7641 6.7641 89.349 0 0 0 57.67483713393631 9.009461452434238 9.009461452434238 9.208187539523749 0 2.555462187404089 1.6989700043360187 0.4247425010840047 0.3494850021680094 + + [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[Y{I|L}]MDR{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][AG][Y{I|L}]MDR{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]QQC(Carbamidomethyl (C))[YV]K{M(Oxidation (M))|F};[YV]AA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 6.7641;6.0261;4.2966;4.2486;3.996;3.8687;3.5586;3.5533;3.4956;3.3628 +;-;-;-;-;-;-;-;-;- + 768 + NaN NaN 132648 NaN 11893 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15074 65.619 NaN 158070 35 0 10934 0.261 -1 FPYVRDFVM 9 49 595.2890978246447 1188.5636427160894 2 595.7899780273438 MULTI HCD FTMS 0 0 0 15069 46596.96875 0.1526853980584592 33 -0.921234130859375 5 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 23.789781309258295 0.1548179064208189 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F} 9 -1 + 42.003 0 0 3.5339 3.5339 81.79 0 0 0 8.018018313141376 26.78597770502592 8.018018313141376 5.172203223519524 0 1.3182503180159344 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YK]{M(Oxidation (M))|F}V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{M(Oxidation (M))|F}PY[RD][{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F} 3.5339;3.0987;1.9683 -;-;- 71 NaN NaN 100758.5 NaN 11894 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15075 65.622 NaN 148660 35 0 24111 0.264 + 24030 RWLWLDYVL 9 44 421.900775291409 1262.680496474427 3 421.9010009765625 MULTI HCD FTMS 0 0 0 15069 23659.125 0.1090959158631187 12 -0.3465118408203125 6 Unmodified _RWLWLDYVL_ ENSG00000130702|ENST00000252999|LAMA5 7.289230182591677 0.29575926068275815 1 {I|L} 1 8 18.099 0 0 1.4334 0 0 1131.5856763834097 0 1131.5856763834097 0 0.14014361800121833 0 0 0 0.5 0 0 0 + {I|L} 1.4334 + + 8 + NaN NaN 105494.7 NaN 11895 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15076 65.625 NaN 261740 35 0 22375 0.261 -1 0 74 521.9360181986473 2604.6437086602364 5 522.1375122070312 MULTI HCD FTMS 0 0 0 15069 39273.1484375 0.8637790482638162 14 -0.3986358642578125 7 NaN NaN 1 {M(Oxidation (M))|F}N 2 -1 18.583 0 0 0.71348 0 0 1677.2285585477953 663.2827315713515 2340.511290119147 0 0 0 0 0 0 0 0 0.7614393726401688 {M(Oxidation (M))|F}N 0.71348 - 88 + NaN NaN 126704.5 NaN 11896 3178 15069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15078 65.63 NaN 1370700 35 0 107770 0.327 + 4615 EYLTYSLKL 9 102 565.3104758910655 1128.606398848931 2 565.3106079101562 MULTI HCD FTMS 0 0 0 15077 536768.25 0.8765285017720318 -1 0.02594757080078125 1 Unmodified _EYLTYSLKL_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 86.33184430468982 0.004622086694044132 1 [YE]{I|L}TYS{I|L}K{I|L} 9 0 + 65.287 0 0 5.7848 5.7848 90.998 0 0 0 8.960828060918828 8.960828060918828 8.960828060918828 23.036049848239344 0 1.6351518780601921 1.3979400086720375 0.2614393726401688 0 + + [YE]{I|L}TYS{I|L}K{I|L};[Y{I|L}]ETYS{I|L}K{I|L};[K{I|L}]SYT{I|L}[YE]{I|L};[Y{I|L}][KS]T{I|L}[YE]{I|L} 5.7848;3.7437;1.2856;0.59607 +;-;-;- + 1451 + NaN NaN 293352.3 NaN 11897 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15079 65.635 NaN 737240 35 0 62559 0.261 + 32119 VYSFGFERL 9 91 559.287407210511 1116.560261487822 2 559.26904296875 MULTI HCD FTMS 0 0 0 15077 67681.53125 0.04998997342588557 23 -0.6601715087890625 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 31.26834338654808 0.10542797264966089 1 [YV]S{M(Oxidation (M))|F}GTVTP 9 4 50.847 0 0 4.5539 0 0 0 162.05584131412346 162.05584131412346 19.48084461386465 0 0 0 0 0.6139829889124311 1.6989700043360187 1.2302046884880937 0 [YV]S{M(Oxidation (M))|F}GTVTP 4.5539 - 3247 + NaN NaN 193954.4 NaN 11898 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15080 65.638 NaN 1263400 35 0 90121 0.261 + 29544 TYYRGFLTL 9 103 567.3026783549586 1132.5908037767172 2 567.3031005859375 MULTI HCD FTMS 0 0 0 15077 376961.03125 0.6957363288155398 -4 0.0944671630859375 3 Unmodified _TYYRGFLTL_ ENSG00000140025|ENST00000316738|EFCAB11;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;nc|ENSG00000140025|Q9BUY7-6|EFCAB11 80.6760300276096 0.005633624786464751 1 [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L} 9 0 + 73.425 0 0 6.4829 6.4829 90.618 0 0 0 14.84657290150379 14.84657290150379 14.84657290150379 12.998037644757048 0 1.9177353201839438 2 0.4247425010840047 0.28872548999643577 + + [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L};[YT]YRA[{M(Oxidation (M))|F}V]T{I|L};[YT]T[HV]W{I|L}T{I|L};[YT]YRG{M(Oxidation (M))|F}T{I|L}{I|L};[YT]YRAS{M(Oxidation (M))|F}{I|L}{I|L};[YT]YRGT{M(Oxidation (M))|F}{I|L}{I|L};[YT]YRA[{I|L}A]Y{I|L};[YT]YRGVVY{I|L};[YT]T{[MS]|[{M(Oxidation (M))|F}A]}[KQ]K{M(Oxidation (M))|F};[YT]Y[VG][KQ]K{M(Oxidation (M))|F} 6.4829;5.3353;5.1721;5.1551;4.5998;4.2485;4.1177;3.7664;3.1625;2.3398 +;-;-;-;-;-;-;-;-;- + 1494 NaN NaN 272287.6 NaN 11899 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15081 65.642 NaN 770690 35 0 207150 0.262 + -1 GFIICWLIMAK 11 69 456.5784833434032 1366.7136206304097 3 456.578857421875 MULTI HCD FTMS 0 0 0 15077 174684.34375 0.0643562508663498 16 -0.4644775390625 4 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 7.477065608646677 0.3861287967437539 1 DNV{I|L}W 5 -1 47.391 0 0 3.4675 0 0 721.3914281348092 0 721.3914281348092 0 34.71462831791278 0 0 0 2.0924778212679485 0 0 0.4247425010840047 DNV{I|L}W 3.4675 - 92 NaN NaN 193072.3 NaN 11900 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15082 65.645 NaN 361450 35 0 132350 0.261 -1 0 64 608.8500402887187 1215.6855276442373 2 608.8505249023438 MULTI HCD FTMS 0 0 0 15077 123577.2421875 0.12270934963486997 13 -0.37268829345703125 5 NaN NaN 1 {I|L}MN{I|L}V{I|L} 6 -1 68.269 0 0 5.6157 0 0 0 529.26398796325 529.26398796325 51.81540340012745 0 0 0 0 1.4604093769761874 2 0 0.3054621874040891 {I|L}MN{I|L}V{I|L} 5.6157 - 370 + NaN NaN 133430.6 NaN 11901 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15083 65.648 NaN 638900 35 0 106130 0.261 + 34377 YPEHISNIISL 11 84 643.3429158803186 1284.6712788274372 2 643.3432006835938 MULTI HCD FTMS 0 0 0 15077 215247.515625 0.22495258893110753 -4 0.0944671630859375 6 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 55.23464941255904 0.05992270572966781 1 DN{I|L}{I|L}S{I|L} 6 6 62.583 0 0 4.8715 0 0 611.3134632794937 0 611.3134632794937 0 50.61097028902558 0 0 0 1.4896518287104437 0 0.4247425010840047 0.75 DN{I|L}{I|L}S{I|L} 4.8715 - 454 NaN NaN 186204.6 NaN 11902 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15084 65.651 NaN 289040 35 0 16579 0.261 + 35664 YYISPRLTF 9 57 580.310800213343 1158.6070474934859 2 580.3106689453125 MULTI HCD FTMS 0 0 0 15077 45411.03515625 0.35996662175402316 4 -0.11457061767578125 7 Unmodified _YYISPRLTF_ ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-2|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;SLA|p.W141L|1|0.19|ENSG00000155926|chr8:133045046-133045046|C/A|missense_variant 24.020572477871973 0.15282392193088168 1 YY{I|L}S 4 5 45.322 0 0 3.9118 0 0 0 629.3401724734068 629.3401724734068 28.86861734192769 0 0 0 0 1.2134679910804405 1.6989700043360187 0 0 + YY{I|L}S 3.9118 + + 34 + NaN NaN 130876.7 NaN 11903 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15085 65.655 NaN 187320 35 0 18185 0.261 -1 SFDGIIAMM 9 58 508.7247305309564 1015.4349081287128 2 508.7248229980469 MULTI HCD FTMS 0 0 0 15077 29596.166015625 0.4987142503204254 -5 0.11737823486328125 8 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 28.486842064014134 0.11819662193267319 1 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 49.914 0 0 4.9156 0 0 331.15635878730626 0 331.15635878730626 0 44.42979712652914 0 0 0 1 0 0.805462187404089 0 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9156 - 31 NaN NaN 113814.4 NaN 11904 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15086 65.658 NaN 71548 35 0 10033 0.261 + 25810 SLPEPSQPI 9 42 484.25738525390625 NaN 0 484.25738525390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SLPEPSQPI_ ENSG00000166987|ENST00000355673|MBD6;MBD6|p.H425Tfs*62|1|0.12|ENSG00000166987|chr12:57526239-57526239|C/-|frameshift_variant;MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant 3.944395688203298 0.27613285122220627 1 {I|L} 1 8 1.2591 0 0 0.13027 0 0 432.2507486310563 418.13849817447505 850.3892468055313 0 0 0 0 0 0 0 0 0 + {I|L} 0.13027 + + 1 + NaN NaN 96939.4 NaN 11905 3179 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15088 65.663 NaN 533760 35 0 30625 0.327 + 27174 SYNNFFRMF 9 83 621.2738121112648 1240.5330712893294 2 621.274658203125 MULTI HCD FTMS 0 0 0 15087 273123.0625 0.05403596095217529 -18 0.4837188720703125 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 118.0683919894846 0.0016252157255221692 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 70.627 0 0 5.6933 0 0 63.99563814866594 0 63.99563814866594 0 37.730012720637376 0 0 0 2.368415180652539 0 0 0.7302046884880937 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6933 - 1520 + NaN NaN 159691.1 NaN 11906 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15089 65.667 NaN 370730 35 0 62355 0.263 + 19476 NPVSQVEIL 9 72 499.7793491024618 997.5441452717237 2 499.77960205078125 MULTI HCD FTMS 0 0 0 15087 187393.015625 0.630710889876328 4 -0.11783599853515625 2 Unmodified _NPVSQVEIL_ ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|2|fusion;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|4|fusion;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6 18.373094154950223 0.20161688160436167 1 DVE{I|L}{I|L} 5 5 35.79 0 0 3.5878 0 0 410.2145252912125 0 410.2145252912125 0 21.18562527100117 0 0 0 0.9247425010840047 0 0 0 DVE{I|L}{I|L} 3.5878 - 77 NaN NaN 135430.9 NaN 11907 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15090 65.671 NaN 573700 35 0 84809 0.261 + 29581 VADPYVVIM 9 67 511.7647874743493 1021.5150220154986 2 511.7650146484375 MULTI HCD FTMS 0 0 0 15087 164942.03125 0.5139934224672253 13 -0.369354248046875 3 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 48.345845343767074 0.03388484103555672 1 VV{I|L}{M(Oxidation (M))|F} 4 5 48.488 0 0 4.7466 0 0 545.2478782664671 0 545.2478782664671 0 34.675390846596486 0 0 0 1.805462187404089 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.7466 + + 269 NaN NaN 166606.4 NaN 11908 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15091 65.674 NaN 1344300 35 0 268940 0.261 + 24697 RYLTVAAVF 9 91 520.3002137463006 1038.5858745594012 2 520.8021850585938 MULTI HCD FTMS 0 0 0 15087 123124.6640625 0.00925944707300653 67 -1.7801437377929688 4 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 29.081581746732265 0.1154664336125038 1 MAAV{M(Oxidation (M))|F} 5 5 42.039 0 0 4.0477 0 0 501.3155995099625 0 501.3155995099625 0 21.74865027867405 0 0 0 1.5356668758921828 0 0 0 MAAV{M(Oxidation (M))|F} 4.0477 - 623 NaN NaN 285655.7 NaN 11909 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15092 65.678 NaN 298090 35 0 26576 0.261 + 19041 NDVLLSHMIT 10 87 571.7975286058188 1141.5805042784375 2 571.79736328125 MULTI HCD FTMS 0 0 0 15087 27965.919921875 0.04319196904748161 35 -0.963714599609375 5 Unmodified _NDVLLSHMIT_ ENSG00000196455|ENST00000356763|PIK3R4 17.11289562659939 0.35104376501799556 1 YY{M(Oxidation (M))|F} 3 9 22.976 0 0 2.0127 0 0 0 665.4009493463499 665.4009493463499 5.981362441963327 0 0 0 0 0.3054621874040891 1.3979400086720375 0 0 YY{M(Oxidation (M))|F} 2.0127 - 372 + NaN NaN 123984 NaN 11910 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15093 65.681 NaN 115340 35 0 13157 0.261 + 26457 STSAPDEPLL 10 53 515.2587181262438 NaN 0 515.259033203125 PEAK HCD FTMS 0 0 0 15087 52238.6015625 0.852350345010795 4 -0.11783599853515625 6 Unmodified _STSAPDEPLL_ ENSG00000184304|ENST00000331968|PRKD1;ENST00000468370.5_1_14:30107689-30135322:-|nuORF 9.38312468134398 0.33215363477037435 1 {I|L}P 2 9 15.217 0 0 1.4795 0 0 131.09657065109394 684.2480124804093 815.3445831315032 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}P 1.4795 - 14 + NaN NaN 104173.1 NaN 11911 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15094 65.684 NaN 143840 35 0 9134.5 0.261 -1 HPAVKVCQL 9 58 526.2918068979476 NaN 0 526.2816772460938 PEAK HCD FTMS 0 0 0 15087 21209.232421875 1 0 0 7 Carbamidomethyl (C) _HPAVKVC(Carbamidomethyl (C))QL_ chr4:177336321-177339783|484|10.95|0.64|4.1|+|0|NEIL3,NEIL3|1;ENSG00000109674|ENST00000264596|NEIL3 7.910154910731844 0.25691533546754686 1 W 1 -1 13.852 0 0 1.3185 0 0 218.12671096015782 643.3361256422451 861.4628366024028 0 0 0 0 0 0.9247425010840047 0 0 0 W 1.3185 - 32 NaN NaN 106942.5 NaN 11912 3180 15087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15096 65.689 NaN 2310200 35 0 289570 0.327 + 13222 KYMDIEFDF 9 100 612.267984504842 1222.521416076484 2 612.2683715820312 MULTI HCD FTMS 0 0 0 15095 1524357.625 0.7560830816747676 -2 0.058990478515625 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 86.947 0 0 7.1121 7.1121 87.413 0 0 0 3.65279269351241 48.23831443747274 3.65279269351241 4.955678082598922 0 2.6549471895720984 0 1.7544321917401078 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YK{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG][MT]T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};Y[YT]EK{M(Oxidation (M))|F}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};Y[YT]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};Y[YT]EKE{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[DN][TP]EK{M(Oxidation (M))|F}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[DN][TP]EKE{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};Y[YT]E{I|L}[SG]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 7.1121;6.7068;5.8419;5.255;4.1678;4.1605;3.9586;3.7401;3.5309;3.2658 +;-;-;-;-;-;-;-;-;- + 8555 NaN NaN 433678.7 NaN 11913 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15097 65.694 NaN 664800 35 0 112450 0.261 + 31577 VYIEAAIRF 9 79 541.3057207962513 1080.5968886593025 2 541.3060302734375 MULTI HCD FTMS 0 0 0 15095 228160.90625 0.45801265208253494 1 -0.03278350830078125 2 Unmodified _VYIEAAIRF_ ENSG00000204178|ENST00000374343|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1 63.960520009940105 0.0120409805053046 1 [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F} 9 0 + 103.59 0 0 9.5867 9.5867 91.71 0 0 0 11.962724883926654 76.97621246364342 11.962724883926654 6.883957647232265 0 3.5 1.6989700043360187 0 0 + + [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}EAAR{I|L}{M(Oxidation (M))|F};[YV]{I|L}[RD]{I|L}GV{M(Oxidation (M))|F};[YV]{I|L}E[RV]GV{M(Oxidation (M))|F};[YV][DV]VA{I|L}R{M(Oxidation (M))|F};[YV][DV]VAR{I|L}{M(Oxidation (M))|F};[YV]{I|L}[RD][VG]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV]AA{I|L}GV{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV]AA{I|L}R{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV]AAR{I|L}{M(Oxidation (M))|F} 9.5867;8.9497;7.2047;6.9261;6.8364;6.1994;5.6681;5.1226;5.0753;4.4382 +;-;-;-;-;-;-;-;-;- + 712 NaN NaN 187002.8 NaN 11914 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15098 65.697 NaN 407150 35 0 42268 0.261 + 4988 FAYIKYDNEL 10 70 638.3162774777584 1274.6180020223167 2 638.3167724609375 MULTI HCD FTMS 0 0 0 15095 173693.125 0.2072196754936109 9 -0.26157379150390625 3 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 17.11289562659939 0.35104376501799556 1 {[MS]|[{M(Oxidation (M))|F}A]}YDGK{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L} 11 4 + 63.932 0 0 5.0158 5.0158 87.569 0 0 0 5.862435673934279 57.301373021504354 5.862435673934279 11.020599913279625 0 1.9247425010840047 0 0.3494850021680094 0 {[MS]|[{M(Oxidation (M))|F}A]}YDGK{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGK{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD[{M(Oxidation (M))|F}T]{[QS]|[NT]}{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKA{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKA{NN|[MP]|[D{I|L}]|[EV]}Y{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDG{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}YS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDG{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}SY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD[{M(Oxidation (M))|F}T]{[QS]|[NT]}A{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GK{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}G{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}YS{I|L} 5.0158;4.1512;3.7809;3.4882;3.35;3.235;3.1939;2.9163;2.8192;2.4894 -;-;-;-;-;-;-;-;-;- 599 NaN NaN 141099.3 NaN 11915 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15099 65.7 NaN 894070 35 0 215110 0.261 + 19684 NWPSRPYLF 9 96 590.3006318745154 1178.5867108158307 2 590.301025390625 MULTI HCD FTMS 0 0 0 15095 270088.9375 0.736631577673401 -2 0.058990478515625 4 Unmodified _NWPSRPYLF_ ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B 47.594388314883695 0.03493607795751234 1 NWP 3 6 50.049 0 0 4.2466 0 0 0 778.3942354791624 778.3942354791624 28.467582568184767 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + NWP 4.2466 + + 788 + NaN NaN 218934.1 NaN 11916 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15100 65.704 NaN 615730 35 0 153520 0.261 + 13889 KYQELQVLF 9 74 584.3238319932752 1166.6331110533504 2 584.3240356445312 MULTI HCD FTMS 0 0 0 15095 119128.625 0.19301636204393044 9 -0.26157379150390625 5 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 32.78568957990786 0.09846250359632436 1 QV{I|L}{M(Oxidation (M))|F} 4 5 52.295 0 0 4.4825 0 0 661.3525813527597 0 661.3525813527597 0 29.938331324631378 0 0 0 1.7614393726401687 0 0 0.2742275032520141 + QV{I|L}{M(Oxidation (M))|F} 4.4825 + + 774 NaN NaN 175297.6 NaN 11917 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15101 65.707 NaN 100300 35 0 14459 0.261 -1 GTLLEITAYYM 11 40 645.8182983398438 NaN 0 645.8182983398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _GTLLEITAYYM(Oxidation (M))_ CON__ENSEMBL:ENSBTAP00000013050 2.9952420565917617 0.33362350433860827 1 {I|L} 1 -1 6.9897 0 0 0.542 0 0 663.2613713746165 510.26032434635 1173.5216957209664 0 0 0 0 0 0 0 0 0 {I|L} 0.542 + + 3 + NaN NaN 98286.1 NaN 11918 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15102 65.71 NaN 250200 35 0 26073 0.262 + 9098 HPFHILIAL 9 63 530.818618658761 1059.622684384322 2 530.8193359375 MULTI HCD FTMS 0 0 0 15095 18972.123046875 0.039677230991596917 21 -0.6011810302734375 7 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 36.466142684027034 0.08156716203802528 1 {I|L}{I|L}A{I|L} 4 5 36.058 0 0 3.4029 0 0 631.3254261701187 0 631.3254261701187 0 20.573193899842437 0 0 0 0.7614393726401688 0 0 0 + {I|L}{I|L}A{I|L} 3.4029 + + 131 NaN NaN 126317.5 NaN 11919 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15103 65.714 NaN 225880 35 0 15195 0.261 + -1 QSCTNTFNHML 11 55 451.5286328120415 1351.5640690363246 3 451.5291748046875 MULTI HCD FTMS 0 0 0 15095 44289.2890625 0.4052469960299723 -4 0.0944366455078125 8 Carbamidomethyl (C) _QSC(Carbamidomethyl (C))TNTFNHML_ REV__ENST00000354828.7_1_21:27143132-27143276:+|nuORF 1.9275035174196113 0.4104672908605315 1 A{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3287 0 0 1115.4477798290964 0 1115.4477798290964 0 13.777587793350532 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.3287 - 19 + NaN NaN 120989.7 NaN 11920 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15104 65.717 NaN 145720 35 0 17908 0.261 -1 SFDGIIAMM 9 55 508.7247305309564 1015.4349081287128 2 509.22625732421875 MULTI HCD FTMS 0 0 0 15095 20218.380859375 0.5190453823020544 -3 0.08493804931640625 9 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 23.1484247019978 0.1603590852062899 1 TS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 38.148 0 0 3.7568 0 0 331.1566334455094 0 331.1566334455094 0 32.663800089887545 0 0 0 1 0 0.4247425010840047 0 TS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.7568 - 38 NaN NaN 100871.8 NaN 11921 3181 15095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15106 65.722 NaN 2007400 35 0 297470 0.326 + 5167 FFDAELSQM 9 88 552.2390895993532 1102.4636262655063 2 552.239501953125 MULTI HCD FTMS 0 0 0 15105 993849.5 0.28908568987301503 22 -0.6273727416992188 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 95.218 2.2185 0.75424 8.6368 8.6368 67.786 0 0 0 0 59.819918418177146 0 0 0 3.1747425010840047 0 1.7051120522087029 0.7614393726401688 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.6368 + + 1614 + NaN NaN 384151.1 NaN 11922 3182 15105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15107 65.726 NaN 566470 35 0 54897 0.261 + 9811 HYNWLIYHL 9 73 629.8219077281749 1257.6292625231497 2 629.8218994140625 MULTI HCD FTMS 0 0 0 15105 255118.5 0.22256306050434446 19 -0.5389175415039062 2 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 114.6490535036381 0.0021834323520089267 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 107.53 0 0 8.55 8.55 92.338 0 0 0 11.328110505357373 11.328110505357373 11.328110505357373 9.208187539523749 0 2.774227503252014 1.5228787452803376 0 1.392159058960253 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{I|L}YHYH{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}YH{I|L};[H{I|L}]Y{I|L}YHYH{I|L} 8.55;7.8178;7.6493;7.0174;6.6875;6.5569;5.488;4.1792 +;-;+;-;-;-;-;- + 480 NaN NaN 166012 NaN 11923 3182 15105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15108 65.73 NaN 521700 35 0 83367 0.261 -1 YSCKFLNCI 9 89 574.2672997166287 1146.5200465000573 2 574.2674560546875 MULTI HCD FTMS 0 0 0 15105 128156.4921875 0.3963507721866856 6 -0.17345428466796875 3 Carbamidomethyl (C) _YSCKFLNC(Carbamidomethyl (C))I_ ENST00000256689.9_1_12:46752348-46752465:-|nuORF 6.723162845929126 0.3000504726104499 1 {I|L}D{M(Oxidation (M))|F}T[W{I|L}]{I|L} 7 -1 27.153 0 0 2.3683 0 0 240.02318007636876 0 240.02318007636876 0 11.676127934005436 0 0 0 1.0682503180159344 0 0.3494850021680094 0 {I|L}D{M(Oxidation (M))|F}T[W{I|L}]{I|L} 2.3683 - 258 NaN NaN 169379.7 NaN 11924 3182 15105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15109 65.733 NaN 250320 35 0 36197 0.261 + 11678 IYYFKANVF 9 74 582.8078701202747 1163.6011873073494 2 582.8084106445312 MULTI HCD FTMS 0 0 0 15105 100985.03125 0.5189099829908146 6 -0.17345428466796875 4 Unmodified _IYYFKANVF_ ENSG00000111229|ENST00000228825|ARPC3 26.88365393820708 0.12808753336095696 1 {I|L}YY 3 6 49.425 0 0 4.2476 0 0 0 721.3712252252561 721.3712252252561 34.73197507588033 0 0 0 0 0.9247425010840047 2 0 0 + {I|L}YY 4.2476 + + 81 + NaN NaN 122684 NaN 11925 3182 15105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15110 65.737 NaN 191500 35 0 14379 0.261 + 31799 VYMDWYEKF 9 66 648.7837956152945 1295.5530382973889 2 648.7836303710938 MULTI HCD FTMS 0 0 0 15105 57861.41796875 0.02472801842920886 84 -2.2120208740234375 5 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 78.06048673739656 0.006479972202176041 1 VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 107.4 0 0 8.29 8.29 93.357 0 0 0 101.45873464120562 8.123468415207498 8.123468415207498 11.600971678920047 0 2.8979400086720375 2 0.3807196863200844 0 + + VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[QT]K{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY[{M(Oxidation (M))|F}E]{[VA]|[{I|L}G]}N{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 8.29;7.3945;5.484;5.3758;3.6946 +;+;-;-;- + 295 + NaN NaN 118716.5 NaN 11926 3182 15105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15111 65.74 NaN 287890 35 0 34528 0.261 + 1119 AYKYIQELW 9 76 607.3160160858336 1212.617479238467 2 607.3170776367188 MULTI HCD FTMS 0 0 0 15105 50110.91796875 0.1728782369873647 8 -0.228790283203125 6 Unmodified _AYKYIQELW_ ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15 23.80106514851385 0.15472041655325736 1 YYRRQE{I|L} 7 5 27.17 0 0 2.2406 0 0 0 201.0606258649115 201.0606258649115 11.597200695509287 0 0 0 0 0.6747425010840047 2 0 0 YYRRQE{I|L} 2.2406 - 369 NaN NaN 130793.9 NaN 11927 3182 15105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15113 65.745 NaN 3615600 35 0 506230 0.327 + 6565 FPLDLDVKM 9 120 547.2838380527611 1092.553123172322 2 547.7723999023438 MULTI HCD FTMS 0 0 0 15112 242502.953125 0.5274832774203336 13 -0.37604522705078125 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 1 {M(Oxidation (M))|F}{I|L}PD{I|L}DVK{M(Oxidation (M))|F} 9 2 + 74.457 0 0 6.8149 6.8149 91.233 0 0 0 20.95204566617481 12.98332479720628 12.98332479720628 12.825382125373963 0 1.9876954943324545 2 0 0 {M(Oxidation (M))|F}{I|L}PD{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}E[VP]DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DV{M(Oxidation (M))|F}Q;[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}PD{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDD{I|L}{I|L}VK{M(Oxidation (M))|F} 6.8149;5.641;5.1532;4.9867;4.6758;3.9444;3.6215;3.4622;3.3862;3.1089 -;+;+;-;-;-;-;-;-;- + 4410 + NaN NaN 632303.1 NaN 11928 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15114 65.749 NaN 1634900 35 0 156470 0.261 -1 0 88 502.23069998583856 1002.4468470384771 2 502.2314758300781 MULTI HCD FTMS 0 0 0 15112 873914.4375 0.8735078196099716 -2 0.05558013916015625 2 NaN NaN 1 D{M(Oxidation (M))|F}D{I|L}H{I|L} 6 -1 58.563 0 0 5.842 0 0 244.08807570625157 0 244.08807570625157 0 36.51145969223869 0 0 0 2.1307196863200843 0 1.610924374808178 0 D{M(Oxidation (M))|F}D{I|L}H{I|L} 5.842 - 375 NaN NaN 329911.2 NaN 11929 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15115 65.753 NaN 1159200 35 0 691860 0.262 -1 0 56 427.3023969861822 852.5902410391644 2 427.30255126953125 MULTI HCD FTMS 0 0 0 15112 730480 0.91650215624641 13 -0.37604522705078125 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.4331 0 0 687.5113511239285 0 687.5113511239285 0 8.15044357464103 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4331 - 24 + NaN NaN 259160 NaN 11930 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15116 65.756 NaN 371210 35 0 76062 0.261 + 24156 RYFDALLKL 9 66 569.8341289647628 1137.6537049963256 2 569.834228515625 MULTI HCD FTMS 0 0 0 15112 141370.203125 1 0 0 4 Unmodified _RYFDALLKL_ ENSG00000183856|ENST00000361170|IQGAP3 18.373094154950223 0.20161688160436167 1 A{I|L}{I|L}K{I|L} 5 4 34.693 0 0 3.0495 0 0 581.2599115076717 0 581.2599115076717 0 20.713337517843655 0 0 0 1 0 0 0 + A{I|L}{I|L}K{I|L} 3.0495 + + 64 NaN NaN 147831.2 NaN 11931 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15117 65.759 NaN 216950 35 0 25172 0.261 + 22831 QYLQKVVL 8 59 495.8024983044086 989.5904436756172 2 495.80279541015625 MULTI HCD FTMS 0 0 0 15112 105543.25 0.6964973692014473 -4 0.11457061767578125 5 Unmodified _QYLQKVVL_ ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT 8.593279151180031 0.5292430274356741 1 VV{I|L} 3 5 28.188 0 0 2.8484 0 0 660.3553333966812 0 660.3553333966812 0 12.703037561203843 0 0 0 0.5 0 0 0 + VV{I|L} 2.8484 + + 45 NaN NaN 114247.3 NaN 11932 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15118 65.763 NaN 190920 35 0 28261 0.261 + 28099 TIAEIKNLF 9 46 524.8053412327444 1047.5961295322886 2 524.8052368164062 MULTI HCD FTMS 0 0 0 15112 61426.16796875 0.3769757600718419 -8 0.20903778076171875 6 Unmodified _TIAEIKNLF_ ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF 51.629811660486645 0.02929079705179888 1 [{I|L}T]AE 4 5 47.435 0 0 4.528 0 0 0 630.3610275637917 630.3610275637917 18.723637474483468 0 0 0 0 1.4247425010840047 2 0 0 + [{I|L}T]AE 4.528 + + 90 NaN NaN 110566.6 NaN 11933 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15119 65.766 NaN 231360 35 0 17224 0.261 + 31800 VYMDWYEKF 9 63 648.7837956152945 1295.5530382973889 2 648.7839965820312 MULTI HCD FTMS 0 0 0 15112 102295.1640625 0.04371750280165301 85 -2.24664306640625 7 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 61.08992128646608 0.016056751534446034 1 [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 90.046 0 0 6.9504 6.9504 93.174 0 0 0 3.243398883557518 83.05638763257846 3.243398883557518 24.45046257204389 0 2.774227503252014 2 0.3252574989159953 0 + + [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYT[VG]{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}D[VS]YTR{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 6.9504;5.0631;5.0631;4.9317 +;-;-;- + 367 NaN NaN 125047.6 NaN 11934 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15120 65.769 NaN 220820 35 0 20069 0.264 + 2720 DVNSFDWLSQL 11 59 441.8779514788441 1322.6120250367323 3 441.877685546875 MULTI HCD FTMS 0 0 0 15112 44005.3828125 0.7249915275692831 -2 0.05558013916015625 8 Unmodified _DVNSFDWLSQL_ DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF;nc|ENSG00000183914|Q9P225-2|DNAH2 9.243775137331637 0.3765410959215665 1 Q{I|L} 2 9 23.315 0 0 1.7628 0 0 1063.4590231830198 0 1063.4590231830198 0 7.742275032520141 0 0 0 0.5 0 0 0.4247425010840047 + Q{I|L} 1.7628 + + 25 + NaN NaN 115254.7 NaN 11935 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15121 65.773 NaN 131270 35 0 9460.8 0.261 + 26236 SPYFTHPTI 9 58 531.7661074803768 1061.5176620275536 2 531.766357421875 MULTI HCD FTMS 0 0 0 15112 31824.505859375 0.06137745882044362 35 -0.9303665161132812 9 Unmodified _SPYFTHPTI_ ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-6|NFIX 6.723162845929126 0.3000504726104499 1 T{I|L} 2 7 24.464 0 0 2.3046 0 0 829.3792013401165 0 829.3792013401165 0 7.474250108400469 0 0 0 0.5 0 0 0 + T{I|L} 2.3046 + + 36 NaN NaN 107076.3 NaN 11936 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15122 65.776 NaN 220910 35 0 20769 0.261 + 20022 NYIGLINRI 9 71 538.3168524674668 NaN 0 538.31689453125 PEAK HCD FTMS 0 0 0 15112 31291.134765625 0.528656149371835 -7 0.17955780029296875 10 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 24.020572477871973 0.16041128140741606 1 {I|L} 1 8 13.737 0 0 1.2783 0 0 277.1049998524498 681.4038063898762 958.508806242326 0 0 0 0 0 0.8252574989159953 0 0 0 + {I|L} 1.2783 + + 20 + NaN NaN 115802.5 NaN 11937 3183 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15124 65.781 NaN 1292600 35 0 141210 0.327 + 15574 LPDTILEKL 9 98 521.3130266957086 1040.611500458217 2 521.313232421875 MULTI HCD FTMS 0 0 0 15123 446708.21875 0.8871638728672577 -1 0.03610992431640625 1 Unmodified _LPDTILEKL_ ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7 136.39213081522345 0.00021731600835925866 1 {I|L}PDT{I|L}{I|L}EK{I|L} 9 0 + 98.533 0 0 9.4687 9.4687 96.706 0 0 0 83.92844079422488 10.246586506634472 10.246586506634472 22.340059088363233 0 2.552887198244136 1.5228787452803376 1.4731975075880328 0.2742275032520141 + + {I|L}PDT{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}{I|L}EK{I|L};{I|L}PDT{I|L}{I|L}{[VA]|[{I|L}G]}S{I|L};[{I|L}P]ES{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}E{I|L}K{I|L};[{I|L}P]ES{I|L}E{I|L}K{I|L};[{I|L}P]DT{I|L}EK{I|L}{I|L};[{I|L}P]DT{I|L}{I|L}T[VG]{I|L};[DP]{I|L}T{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}{I|L}[SG]{I|L}{I|L} 9.4687;7.3219;7.2613;6.9615;6.7776;6.4172;5.4042;5.2125;5.161;5.0636 +;+;-;-;-;-;-;-;-;- + 1175 + NaN NaN 277673.8 NaN 11938 3184 15123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15125 65.785 NaN 1158300 35 0 57474 0.261 + 6330 FPFYYEIKM 9 99 627.299003034021 1252.5834531348419 2 627.2987670898438 MULTI HCD FTMS 0 0 0 15123 515635.1875 0.5998106235340828 -2 0.05890655517578125 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 96.36657018975838 0.004359138328518304 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 69.777 0 0 5.5706 5.5706 82.442 0 0 0 0.31234684152074976 0.31234684152074976 0.31234684152074976 0.31234684152074976 0 2.2346368802282015 0 0.8556270500406936 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}PV[DG]CVE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC[DG]VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC{[HG]|PP}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}PV[C(Carbamidomethyl (C))D]VE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKV[C(Carbamidomethyl (C))D]VPE 5.5706;5.5457;5.5267;5.0981;4.7379;3.5982;3.5733;3.3794;3.3136;3.2887 +;-;+;-;-;-;-;-;-;- + 4514 + NaN NaN 262833.5 NaN 11939 3184 15123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15126 65.789 NaN 247130 35 0 23676 0.261 + 33479 YHTSKWQPF 9 54 597.2901861175244 1192.5658193018487 2 597.289794921875 MULTI HCD FTMS 0 0 0 15123 46483.5390625 0.644422568582416 -3 0.0916900634765625 3 Unmodified _YHTSKWQPF_ REV__ENSG00000162885|ENST00000366600|B3GALNT2;REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2 10.823927491677226 0.26684000660059787 1 M 1 -1 5.4846 0 0 0.45989 0 0 632.2022461590738 426.3015535943969 1058.5037997534707 0 0 0 0 0 0 0 0 0 M 0.45989 - 11 + NaN NaN 117010.8 NaN 11940 3184 15123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15127 65.792 NaN 192120 35 0 19654 0.264 + 21084 PNAVEQYFDQL 11 50 441.8779514788441 1322.6120250367323 3 441.8789978027344 MULTI HCD FTMS 0 0 0 15123 37597.30859375 0.6194180904190162 -1 0.03610992431640625 4 Unmodified _PNAVEQYFDQL_ REV__CON__Q3T052;REV__ENSG00000055955|ENST00000266041|ITIH4;REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF;REV__nc|ENSG00000055955|Q14624-2|ITIH4;REV__nc|ENSG00000055955|Q14624-3|ITIH4;REV__nc|ENSG00000055955|Q14624-4|ITIH4 4.406150317652783 0.39959678800402487 1 Q{I|L} 2 -1 21.722 0 0 1.6423 0 0 1063.4582297259885 0 1063.4582297259885 0 18.622731327798547 0 0 0 0.4247425010840047 0 0 0 Q{I|L} 1.6423 + + 33 + NaN NaN 112419.9 NaN 11941 3184 15123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15128 65.796 NaN 230450 35 0 46991 0.261 + 18601 MVTRCNNV 8 47 468.72299860860966 935.4314442840193 2 468.7232971191406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MVTRCNNV_ CON__Q3MHH8;ENSG00000174876|ENST00000330330|AMY1B;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;nc|ENSG00000240038|P19961-2|AMY2B;nc|ENSG00000243480|P04746-2|AMY2A 2.577480529830294 0.5381683276125971 1 V 1 7 4.6041 0 0 0.49219 0 0 114.00533505728784 719.3361300104124 833.3414650677003 0 0 0 0 0 0 0 0 0 + V 0.49219 + + 8 + NaN NaN 122786.5 NaN 11942 3184 15123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15129 65.799 NaN 174560 35 0 37790 0.261 + -1 SCYWPVCL 8 56 514.2226147053143 NaN 0 514.2230224609375 PEAK HCD FTMS 0 0 0 15123 25095.640625 0.5564412752700927 -1 0.03610992431640625 6 Carbamidomethyl (C) _SC(Carbamidomethyl (C))YWPVCL_ REV__ENST00000475488.3_1_7:149493482-149494663:+|nuORF 14.581692164780916 0.38795613832665576 1 V 1 -1 9.2917 0 0 0.90525 0 0 185.080071824978 739.2580660455686 924.3381378705467 0 0 0 0 0 0.3807196863200844 0 0 0 V 0.90525 + + 21 + NaN NaN 106753 NaN 11943 3184 15123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15131 65.804 NaN 1277400 35 0 211000 0.327 + 34378 YPEHISNIISL 11 102 643.3429158803186 1284.6712788274372 2 643.3430786132812 MULTI HCD FTMS 0 0 0 15130 889457.875 0.9295617240711715 2 -0.06226348876953125 1 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 88.36371040165146 0.007145524729115633 1 SDN{I|L}{I|L}S{I|L} 7 6 75.03 0 0 5.8404 0 0 524.2681141584 0 524.2681141584 0 53.99535244889127 0 0 0 1.5387254899964358 0 1.3338395061109685 0.75 SDN{I|L}{I|L}S{I|L} 5.8404 - 2487 NaN NaN 277823.2 NaN 11944 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15132 65.808 NaN 1651200 35 0 238420 0.261 + 15397 LPDGYEFKF 9 119 558.2735391054898 1114.5325252777795 2 558.762939453125 MULTI HCD FTMS 0 0 0 15130 35392.4609375 0.3709487213332106 5 -0.147003173828125 2 Unmodified _LPDGYEFKF_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF;ENST00000472321.1_1_22:38074415-38075753:+|nuORF 23.789781309258295 0.1548179064208189 1 {I|L}EENEKEA 8 7 53.9 0 0 4.8361 0 0 0 169.0620058649047 169.0620058649047 19.842757820673015 0 0 0 0 0 1.3010299956639813 0.6109243748081782 0.6747425010840047 {I|L}EENEKEA 4.8361 - 3368 + NaN NaN 341260 NaN 11945 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15133 65.812 NaN 1423500 35 0 82103 0.261 + 29545 TYYRGFLTL 9 116 567.3026783549586 1132.5908037767172 2 567.3031616210938 MULTI HCD FTMS 0 0 0 15130 354586.0625 0.6544400744948555 2 -0.06226348876953125 3 Unmodified _TYYRGFLTL_ ENSG00000140025|ENST00000316738|EFCAB11;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;nc|ENSG00000140025|Q9BUY7-6|EFCAB11 80.6760300276096 0.005633624786464751 1 [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L} 9 0 + 59.231 0 0 5.2297 5.2297 87.964 0 0 0 21.42544976785331 35.52046884880937 21.42544976785331 11.210823758143285 0 1.6549471895720984 2 0.3807196863200844 0 + + [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L};[YT]YRG{M(Oxidation (M))|F}{I|L}{I|L}T;[YT]YRA[{M(Oxidation (M))|F}V]T{I|L};[YT]YRA{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[YT]YRGVVY{I|L};[YT]YRA[{M(Oxidation (M))|F}V]{I|L}T;[YT]YRA[{I|L}A]Y{I|L};{[CT]|[{M(Oxidation (M))|F}G]}DH[{I|L}A]{M(Oxidation (M))|F}{I|L}T{I|L};{[CT]|[{M(Oxidation (M))|F}G]}DH[{I|L}A]{M(Oxidation (M))|F}{I|L}{I|L}T;{[CT]|[{M(Oxidation (M))|F}G]}DHVV[{M(Oxidation (M))|F}V]T{I|L} 5.2297;4.2398;3.5441;2.9073;2.6449;2.5543;2.4195;2.2677;1.2779;0.58223 +;-;-;-;-;-;-;-;-;- + 1379 NaN NaN 307399.3 NaN 11946 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15134 65.815 NaN 1587500 35 0 576530 0.261 -1 FGLDCEMCLT 10 100 574.227266486537 1146.439980039874 2 574.2274780273438 MULTI HCD FTMS 0 0 0 15130 766313.8125 0.4956346149555033 -5 0.140716552734375 4 Oxidation (M) _FGLDCEM(Oxidation (M))CLT_ ENSG00000005189|ENST00000261377|REXO5;nc|ENSG00000005189|Q96IC2-2|REXO5 14.838274106304384 0.3723198072575719 1 V[{I|L}T] 3 -1 19.014 0 0 1.6585 0 0 815.2290863404584 0 815.2290863404584 0 1.6674766037316715 0 0 0 0.805462187404089 0 0.28872548999643577 0 V[{I|L}T] 1.6585 - 272 + NaN NaN 324487.8 NaN 11947 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15135 65.818 NaN 606690 35 0 33000 0.261 + 27175 SYNNFFRMF 9 86 621.2738121112648 1240.5330712893294 2 621.2747802734375 MULTI HCD FTMS 0 0 0 15130 287429.65625 0.0568664452553221 -13 0.34325408935546875 5 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 110.5527297667825 0.0028521687250969148 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 85.065 0 0 6.8571 6.8571 89.51 0 0 0 11.879617791072832 59.65858457933251 11.879617791072832 9.208187539523749 0 3 0 0.6237125054200234 1.579689690656103 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NN[MT];{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}GGN[MT];{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NGG[MT] 6.8571;6.1148;6.1148;4.752;2.3912;1.6524;1.6524 +;-;-;-;-;-;- + 1524 NaN NaN 176634.7 NaN 11948 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15136 65.822 NaN 605880 35 0 144140 0.264 + 3230 EDLLELSHLIW 11 69 456.5784833434032 1366.7136206304097 3 456.9132385253906 MULTI HCD FTMS 0 0 0 15130 180259.59375 0.08448003606320552 22 -0.6207351684570312 6 Unmodified _EDLLELSHLIW_ REV__ENSG00000257365|ENST00000246166|FNTB;REV__ENST00000554334.5_1_14:65482315-65499209:+|nuORF;REV__ENST00000555372.5_1_14:65453620-65488730:+|nuORF;REV__nc|ENSG00000257365|P49356-2|FNTB 7.477065608646677 0.3861287967437539 1 {I|L}W 2 -1 28.856 0 0 2.1114 0 0 1049.5390438560303 0 1049.5390438560303 0 15.317183090963749 0 0 0 0.7887254899964358 0 0 0 {I|L}W 2.1114 + + 83 NaN NaN 167097.9 NaN 11949 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15137 65.825 NaN 498440 35 0 74817 0.261 -1 VADPYVVIM 9 73 511.7647874743493 1021.5150220154986 2 511.7649841308594 MULTI HCD FTMS 0 0 0 15130 142468 0.4439597012181251 18 -0.5128097534179688 7 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 34.10243960390752 0.09241788333544565 1 VV{I|L}{M(Oxidation (M))|F} 4 -1 45.433 0 0 4.4476 0 0 545.2485829084 0 545.2485829084 0 28.979400086720375 0 0 0 1.5 0 0 0 VV{I|L}{M(Oxidation (M))|F} 4.4476 + + 90 NaN NaN 158830.7 NaN 11950 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15138 65.828 NaN 678880 35 0 219120 0.262 + 33710 YLAMLLFMLF 10 72 421.2287851562138 1260.6645260688415 3 421.5634460449219 MULTI HCD FTMS 0 0 0 15130 99998.859375 0.5864458538446637 -3 0.081787109375 8 Unmodified _YLAMLLFMLF_ ENSG00000188869|ENST00000359440|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;nc|ENSG00000188869|Q7Z5M5-2|TMC3;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant 12.531546534597751 0.39389615866941496 1 [Y{I|L}]D{I|L} 4 7 28.962 0 0 2.2974 0 0 0 753.3845327429227 753.3845327429227 2.992997296092277 0 0 0 0 0 2 0 0 [Y{I|L}]D{I|L} 2.2974 - 65 NaN NaN 187093.1 NaN 11951 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15139 65.832 NaN 157110 35 0 36444 0.261 + 20572 PEGLDVQL 8 49 435.73166116245534 869.4487693917107 2 435.7315979003906 MULTI HCD FTMS 0 0 0 15130 84029.3203125 0.8207534362971662 -2 0.058990478515625 9 Unmodified _PEGLDVQL_ REV__ENSG00000126461|ENST00000360565|SCAF1;REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 46.020951573049366 0.15358337540685318 1 QHDVQ{I|L} 6 -1 48.593 0 0 5.589 0 0 131.0938819478659 0 131.0938819478659 0 48.593210452788256 0 0 0 0.8807196863200843 0 0 1.1861818737241734 QHDVQ{I|L} 5.589 - 75 + NaN NaN 100381.4 NaN 11952 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15140 65.835 NaN 1120000 35 0 189580 0.261 + 28830 TVFDQPQE 8 78 482.2244184827376 962.4342840322752 2 482.2244567871094 MULTI HCD FTMS 0 0 0 15130 63698.42578125 0.25040496485810415 -5 0.140716552734375 10 Unmodified _TVFDQPQE_ DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;ENSG00000103423|ENST00000262375|DNAJA3;ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;nc|ENSG00000103423|Q96EY1-3|DNAJA3 85.27202061508552 0.016688148945806582 1 TAAENE{M(Oxidation (M))|F} 7 7 105.59 0 0 10.971 0 0 0 197.09319482974846 197.09319482974846 66.49772391588014 0 0 0 0 2.56295299324845 1.6989700043360187 2.031234684152075 0.7742275032520141 TAAENE{M(Oxidation (M))|F} 10.971 - 3244 + NaN NaN 247308.4 NaN 11953 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15141 65.838 NaN 183060 35 0 32788 0.261 + 33193 YFALAPIATV 10 59 533.3026306723798 1064.5907084115595 2 533.3028564453125 MULTI HCD FTMS 0 0 0 15130 53885.0859375 0.746522113526319 -5 0.140716552734375 11 Unmodified _YFALAPIATV_ ENSG00000173239|ENST00000404743|LIPM;nc|ENSG00000173239|Q5VYY2-2|LIPM 15.847184025352803 0.36288280428275715 1 SS{I|L} 3 9 14.437 0 0 1.3561 0 0 759.438194839097 0 759.438194839097 0 8.952424927286843 0 0 0 0.27422750325201406 0 0.4247425010840047 0 SS{I|L} 1.3561 - 35 + NaN NaN 105531.9 NaN 11954 3185 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15143 65.843 NaN 2078200 35 0 252360 0.327 + 13223 KYMDIEFDF 9 107 612.267984504842 1222.521416076484 2 612.2682495117188 MULTI HCD FTMS 0 0 0 15142 1286964.625 0.6383358889790784 3 -0.08156585693359375 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 83.317 0 0 6.8151 6.8151 86.861 0 0 0 2.922152515121226 48.20545915954033 2.922152515121226 4.898641557451526 0 2.6549471895720984 0 1.6624379954164592 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VEKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}VEE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KVEE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG][MT]T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]AAT{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VKEE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.8151;6.4144;5.9903;5.9345;5.7077;5.5338;5.1698;5.0676;5.0676;5.0423 +;-;-;-;-;-;-;-;-;- + 4341 NaN NaN 399193.4 NaN 11955 3186 15142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15144 65.848 NaN 955370 35 0 109270 0.261 + 889 AYAKFYTLL 9 91 545.3031555258353 1088.5917581184706 2 545.3035888671875 MULTI HCD FTMS 0 0 0 15142 631933.4375 0.9547153620269745 -1 0.03946685791015625 2 Unmodified _AYAKFYTLL_ ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C 92.65332237495696 0.004456439685314431 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AK{M(Oxidation (M))|F}YT{I|L}{I|L} 9 0 + 103.64 0 0 9.5204 9.5204 89.116 0 0 0 5.110782744792687 5.110782744792687 5.110782744792687 1.2371250542002343 0 2.7302046884880937 2 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AK{M(Oxidation (M))|F}YT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KA{M(Oxidation (M))|F}YT{I|L}{I|L};YAAK{M(Oxidation (M))|F}YT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[RH]KAC{I|L};[KA]YA{M(Oxidation (M))|F}YT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[RH]CAK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[Y{M(Oxidation (M))|F}]AT{I|L}{I|L};YAAK[RH]KC{I|L};[KA]Y[RH]KAC{I|L};[KA]Y[Y{M(Oxidation (M))|F}]AT{I|L}{I|L} 9.5204;9.4067;9.0509;6.9864;6.7446;6.7168;6.2659;5.6197;4.1686;3.6038 +;-;-;-;-;-;-;-;-;- + 1429 NaN NaN 226714.7 NaN 11956 3186 15142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15145 65.851 NaN 1793600 35 0 153170 0.261 + 2895 DYSPYFKTI 9 114 567.2791460627044 1132.5437391922087 2 567.2792358398438 MULTI HCD FTMS 0 0 0 15142 345812.65625 0.014025416314117594 102 -2.7028579711914062 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 70.33199760932243 0.0089807860198535 1 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 7 4 54.001 0 0 4.7681 0 0 0 229.11928735904533 229.11928735904533 22.746039030862164 0 0 0 0 1.5356668758921828 1.5228787452803376 0.6307196863200843 0 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 4.7681 - 1264 + NaN NaN 358329.9 NaN 11957 3186 15142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15146 65.854 NaN 367110 35 0 47472 0.261 + 31578 VYIEAAIRF 9 68 541.3057207962513 1080.5968886593025 2 541.3062133789062 MULTI HCD FTMS 0 0 0 15142 221486.171875 0.4446137186574964 6 -0.15966033935546875 4 Unmodified _VYIEAAIRF_ ENSG00000204178|ENST00000374343|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1 63.960520009940105 0.0120409805053046 1 [YV]{I|L}EAA{I|L}R 8 1 88.805 0 0 8.2182 0 0 0 162.05628381900627 162.05628381900627 66.62122126841915 0 0 0 0 2.916386562212267 2 0 0 + [YV]{I|L}EAA{I|L}R 8.2182 + + 686 + NaN NaN 131487.2 NaN 11958 3186 15142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15147 65.858 NaN 476760 35 0 95833 0.261 + 35472 YYFDSYAHF 9 68 606.7532896229152 1211.4920263126303 2 606.7537231445312 MULTI HCD FTMS 0 0 0 15142 102590.921875 0.7890752962749356 -1 0.03946685791015625 5 Unmodified _YYFDSYAHF_ ENSG00000111218|ENST00000382622|PRMT8;ENSG00000126457|ENST00000454376|PRMT1;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1 42.09456458481378 0.05572955244001856 1 YY{M(Oxidation (M))|F}D 4 5 55.305 0 0 4.565 0 0 0 620.2482393854124 620.2482393854124 33.878493940035455 0 0 0 0 0.9247425010840047 2 0.3494850021680094 0 + YY{M(Oxidation (M))|F}D 4.565 + + 166 + NaN NaN 149644.5 NaN 11959 3186 15142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15148 65.861 NaN 181440 35 0 25755 0.262 + 14428 LEPAAQGSLL 10 57 499.7793491024618 997.5441452717237 2 499.7798767089844 MULTI HCD FTMS 0 0 0 15142 60814.953125 0.20468560728011884 10 -0.277587890625 6 Unmodified _LEPAAQGSLL_ ENST00000407627.6_1_19:8025016-8025118:-|nuORF 8.745405648335112 0.42901288225909884 1 E{I|L}{I|L} 3 7 28.812 0 0 2.8883 0 0 624.3187123029312 0 624.3187123029312 0 21.822581265925436 0 0 0 0.5 0 0 0 E{I|L}{I|L} 2.8883 - 34 NaN NaN 109195.1 NaN 11960 3186 15142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15150 65.866 NaN 1873400 35 0 237650 0.327 + 5168 FFDAELSQM 9 104 552.2390895993532 1102.4636262655063 2 552.23876953125 MULTI HCD FTMS 0 0 0 15149 794469.125 0.23109098015689056 27 -0.724609375 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 94.364 3.7236 1.266 8.5594 8.5594 67.694 0 0 0 0 69.28000939168703 0 0 0 3.2302046884880937 0 1.7134679910804405 0.6747425010840047 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.5594 + + 1858 + NaN NaN 367718.8 NaN 11961 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15151 65.87 NaN 892870 35 0 174790 0.261 -1 EENTIFKAW 9 109 590.2876825884198 NaN 0 590.3009033203125 PEAK HCD FTMS 0 0 0 15149 29201.9609375 0.8920284014263955 1 -0.0294036865234375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EENTIFKAW_ ENSG00000117595|ENST00000367021|IRF6;IRF6|p.V62I|1|0.07|ENSG00000117595|chr1:209796543-209796543|C/T|missense_variant 16.149105407346934 0.21324626030841579 1 PN 2 -1 8.4434 0 0 0.71641 0 0 781.3856241106301 183.05640588931877 964.4420299999489 0 0 0 0 0 0 0 0 0.3494850021680094 PN 0.71641 - 466 + NaN NaN 217389 NaN 11962 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15152 65.874 NaN 724490 35 0 68375 0.261 + 30255 VKDASDQNFD 10 93 569.7536201404158 1137.4926873476315 2 569.754150390625 MULTI HCD FTMS 0 0 0 15149 209797.109375 0.6560522671815925 -2 0.06226348876953125 3 Unmodified _VKDASDQNFD_ ENSG00000169213|ENST00000371655|RAB3B 4.189502756095605 0.45312800054222196 1 {I|L}[HT]{M(Oxidation (M))|F} 4 9 13.812 0 0 1.2143 0 0 0 636.1849459283811 636.1849459283811 2.2184874961635614 0 0 0 0 0 0 0 0 {I|L}[HT]{M(Oxidation (M))|F} 1.2143 - 194 + NaN NaN 191463.4 NaN 11963 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15153 65.877 NaN 725320 35 0 84538 0.261 + 16492 LTDFINEQP 9 88 538.7666763056175 1075.5187996780348 2 538.7667236328125 MULTI HCD FTMS 0 0 0 15149 155383.234375 0.711301701826455 -1 0.022796630859375 4 Unmodified _LTDFINEQP_ REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF 66.45667989310934 0.010234776021261575 1 TAAENE{M(Oxidation (M))|F}VPV 10 -1 + 91.966 0 0 8.5508 8.5508 91.664 0 0 0 52.57174937269816 6.759687322722812 6.759687322722812 9.164539485499262 0 3.055462187404089 1.5228787452803376 1.360924374808178 0 TAAENE{M(Oxidation (M))|F}VPV;TAAEGGE{M(Oxidation (M))|F}VPV;TAAENRRC(Carbamidomethyl (C))V;[TA]A{M(Oxidation (M))|F}PW{[MG]|[TS]}PV;TA{[ET]|[MV]}WP{M(Oxidation (M))|F}A[PG];TA{[ET]|[MV]}WP{M(Oxidation (M))|F}[QP];{I|L}T{[MG]|[TS]}WP{M(Oxidation (M))|F}A[PG];TAAEGGRRC(Carbamidomethyl (C))V;T{I|L}{[MG]|[TS]}WP{M(Oxidation (M))|F}A[PG];{I|L}T{[MG]|[TS]}WP{M(Oxidation (M))|F}[QP] 8.5508;7.6987;5.0972;4.8287;4.5078;4.3654;4.2476;4.241;3.619;3.5478 -;-;-;-;-;-;-;-;-;- 1084 + NaN NaN 188967.6 NaN 11964 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15154 65.881 NaN 333770 35 0 47470 0.261 + -1 AMFKHGNI 8 66 467.23347543657377 NaN 0 467.2334289550781 PEAK HCD FTMS 0 0 0 15149 54041.13671875 0.7297278579295386 2 -0.05876922607421875 5 Oxidation (M) _AM(Oxidation (M))FKHGNI_ REV__ENSG00000027075|ENST00000332981|PRKCH;REV__nc|ENSG00000027075|P24723-2|PRKCH 5.760428011301431 0.38822285293237185 1 N{I|L} 2 -1 10.969 0 0 1.1764 0 0 132.11769469721224 570.1868665587939 702.3045612560061 0 0 0 0 0 0 0 0 0 N{I|L} 1.1764 + + 16 + NaN NaN 130719.2 NaN 11965 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15155 65.884 NaN 219920 35 0 18204 0.261 + 31801 VYMDWYEKF 9 59 648.7837956152945 1295.5530382973889 2 648.7840576171875 MULTI HCD FTMS 0 0 0 15149 57008.85546875 0.024363661972831685 89 -2.3332290649414062 6 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 57.24910588100465 0.021429789259086996 1 [YV]{M(Oxidation (M))|F}DWYE 7 2 67.44 0 0 5.2055 0 0 0 290.15070520572505 290.15070520572505 27.488510660087677 0 0 0 0 2.024227503252014 2 0.3252574989159953 0 + [YV]{M(Oxidation (M))|F}DWYE 5.2055 + + 157 + NaN NaN 112420.6 NaN 11966 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15156 65.887 NaN 424840 35 0 75317 0.261 + 32650 WNAWPPFIY 9 72 597.2901861175244 1192.5658193018487 2 597.2918701171875 MULTI HCD FTMS 0 0 0 15149 72132.078125 1 0 0 7 Unmodified _WNAWPPFIY_ REV__ENSG00000103546|ENST00000568943|SLC6A2;REV__nc|ENSG00000103546|P23975-2|SLC6A2;REV__nc|ENSG00000103546|P23975-3|SLC6A2 13.50788311687929 0.24365122550260465 1 Y 1 -1 4.6041 0 0 0.38607 0 0 150.1052661568968 876.3703052273776 1026.4755713842744 0 0 0 0 0 0 0 0 0 Y 0.38607 + + 18 + NaN NaN 150752.6 NaN 11967 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15157 65.891 NaN 211360 35 0 38110 0.261 + 4333 EVVDLLLAR 9 75 514.3110908225186 NaN 0 514.3109741210938 PEAK HCD FTMS 0 0 0 15149 18014.89453125 0.4110444052912437 1 -0.0294036865234375 8 Unmodified _EVVDLLLAR_ ENSG00000131503|ENST00000360839|ANKHD1;ENST00000506930.2_1_5:139884419-139889237:+|nuORF;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 17.11289562659939 0.20677709319598864 1 {I|L}{I|L}{I|L} 3 6 13.812 0 0 1.3454 0 0 263.16243915707656 421.1720369928344 684.334476149911 0 0 0 0 0 0 0 0 0 + {I|L}{I|L}{I|L} 1.3454 + + 35 + NaN NaN 114580 NaN 11968 3187 15149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15159 65.895 NaN 29603000 35 0 5312600 0.327 + 27530 TAAENEFVTL 10 96 547.7716926644357 1093.5288323956713 2 547.7725219726562 MULTI HCD FTMS 0 0 0 15158 27633318 1 0 0 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 200.32105748857333 3.4553563873582277E-23 1 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 117.96 0 0 10.787 10.787 96.409 0 0 0 14.763582385535088 16.53212513775344 14.763582385535088 14.763582385535088 0 2.9559771852360797 1.154901959985743 2.118415180652539 1.2302046884880937 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};[TP]{[CA]|SS}NE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}N[TA]E{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L} 10.787;9.437;9.3867;8.824;8.5447;8.0138;7.8678;7.4739;6.925;6.0507 +;-;-;-;-;-;-;-;-;- + 3266 NaN NaN 713452.3 NaN 11969 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15160 65.9 NaN 852150 35 0 486890 0.262 -1 0 58 427.3023969861822 852.5902410391644 2 427.3026428222656 MULTI HCD FTMS 0 0 0 15158 632481.875 0.7935480810210715 18 -0.49961090087890625 2 NaN NaN 1 {I|L} 1 -1 3.0989 0 0 0.36347 0 0 486.32716065723685 250.1625155084594 736.4896761656962 0 0 0 0 0 0 0 0 0 {I|L} 0.36347 - 18 + NaN NaN 207419.5 NaN 11970 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15161 65.903 NaN 1268300 35 0 119650 0.261 -1 0 93 502.23069998583856 1002.4468470384771 2 502.23138427734375 MULTI HCD FTMS 0 0 0 15158 818509.625 0.8181287860500936 3 -0.08139801025390625 3 NaN NaN 1 D{M(Oxidation (M))|F}D{I|L}H{I|L} 6 -1 59.562 0 0 5.9417 0 0 244.08839614082189 0 244.08839614082189 0 37.51094186414001 0 0 0 2.1549471895720984 0 1.610924374808178 0 D{M(Oxidation (M))|F}D{I|L}H{I|L} 5.9417 - 483 NaN NaN 271840.6 NaN 11971 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15162 65.907 NaN 1806700 35 0 404030 0.261 + 20116 NYIPYLTKL 9 88 562.820955992304 1123.627359051408 2 562.8209838867188 MULTI HCD FTMS 0 0 0 15158 723711.9375 0.5070820935516698 -3 0.09166717529296875 4 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 96.93554129104106 0.004344229100022454 1 [YN]{I|L}PY{I|L}TK{I|L} 9 0 + 91.437 0 0 8.1376 8.1376 95.254 0 0 0 16.276362525516532 16.276362525516532 16.276362525516532 25.576512587389644 0 2.473197507588033 1.6989700043360187 0 1.6861818737241734 + + [YN]{I|L}PY{I|L}TK{I|L};[Y{I|L}]NPY{I|L}TK{I|L};[Y{I|L}]GGPY{I|L}TK{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]PY{I|L}TK{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[Q{I|L}]{I|L}TK{I|L} 8.1376;5.8614;4.1026;3.4903;3.3086 +;-;-;-;- + 385 NaN NaN 364362.5 NaN 11972 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15163 65.91 NaN 384370 35 0 31409 0.261 + 9812 HYNWLIYHL 9 78 629.8219077281749 1257.6292625231497 2 629.8219604492188 MULTI HCD FTMS 0 0 0 15158 194800.84375 0.169942485448247 25 -0.67572021484375 5 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 92.65332237495696 0.004456439685314431 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 89.231 0 0 7.0951 7.0951 88.349 0 0 0 14.867034247796767 14.867034247796767 14.867034247796767 7.284700126913393 0 2.274227503252014 1.5228787452803376 0 0.7614393726401688 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}WN{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}WN{I|L};{[WN]|[YH]}NW{I|L}{I|L}WGG{I|L};{[WN]|[YH]}GGW{I|L}{I|L}WN{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}WGG{I|L} 7.0951;6.5159;6.363;5.913;5.8989;5.3197;5.1667;5.1667;4.9729;4.5875 +;-;-;+;-;-;-;-;-;- + 234 NaN NaN 140989.8 NaN 11973 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15164 65.913 NaN 276290 35 0 16524 0.261 + 22141 QKDLDYYFAL 10 56 638.3162774777584 1274.6180020223167 2 638.3168334960938 MULTI HCD FTMS 0 0 0 15158 111090.9765625 0.13253395097560472 16 -0.45391845703125 6 Unmodified _QKDLDYYFAL_ REV__ENSG00000042062|ENST00000327979|RIPOR3;REV__ENST00000462493.1_1_20:49214115-49253138:-|nuORF;REV__nc|ENSG00000042062|Q96MK2-2|RIPOR3;REV__nc|ENSG00000042062|Q96MK2|RIPOR3 4.897010918128616 0.4493830473644964 1 DYS{I|L} 4 -1 34.157 0 0 2.6798 0 0 778.4247303693375 0 778.4247303693375 0 22.1669877129645 0 0 0 0.8494850021680094 0 0 0 DYS{I|L} 2.6798 - 18 NaN NaN 139028.2 NaN 11974 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15165 65.917 NaN 614940 35 0 93544 0.261 + -1 CALKCVFLT 9 75 556.2844082924432 1110.5542636516864 2 556.2836303710938 MULTI HCD FTMS 0 0 0 15158 107253.3046875 0.9658048910516587 1 -0.02936553955078125 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))ALKC(Carbamidomethyl (C))VFLT_ REV__ENSG00000081985|ENST00000674203|IL12RB2;REV__nc|ENSG00000081985|Q99665-2|IL12RB2;REV__nc|ENSG00000081985|Q99665-3|IL12RB2 7.910154910731844 0.2910521888787154 1 WWNE{M(Oxidation (M))|F}VT 7 -1 48.056 0 0 4.3272 0 0 0 145.0963112413049 145.0963112413049 11.32937987061139 0 0 0 0 0 0 1.4124379954164592 1.1747425010840047 WWNE{M(Oxidation (M))|F}VT 4.3272 - 355 NaN NaN 175050.2 NaN 11975 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15166 65.92 NaN 351940 35 0 68715 0.261 + 13890 KYQELQVLF 9 72 584.3238319932752 1166.6331110533504 2 584.32421875 MULTI HCD FTMS 0 0 0 15158 82495.5625 0.13366219377179658 16 -0.45391845703125 8 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 34.40172386719151 0.0910440009062557 1 QV{I|L}{M(Oxidation (M))|F} 4 5 52.537 0 0 4.5033 0 0 661.3427014769654 0 661.3427014769654 0 46.33925646871916 0 0 0 1.6747425010840047 0 0 0.6861818737241735 + QV{I|L}{M(Oxidation (M))|F} 4.5033 + + 389 NaN NaN 131891.7 NaN 11976 3188 15158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15168 65.925 NaN 1450500 35 0 64790 0.327 + 6331 FPFYYEIKM 9 102 627.299003034021 1252.5834531348419 2 627.299072265625 MULTI HCD FTMS 0 0 0 15167 833177.6875 0.9691906998764706 3 -0.078094482421875 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 86.33184430468982 0.004622086694044132 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 75.345 0 0 6.0152 6.0152 85.94 0 0 0 7.469413858957466 6.27661072215831 6.27661072215831 6.27661072215831 0 2.5994850021680094 1.6989700043360187 0.9049471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC[DG]VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC{[HG]|PP}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}PV[DG]CVE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE[KP]Y;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKV[C(Carbamidomethyl (C))D]VPE 6.0152;5.5141;5.478;5.4188;4.8033;4.3436;4.2684;4.2484;4.0701;4.0589 +;-;-;+;-;-;-;-;-;- + 6642 NaN NaN 296676.6 NaN 11977 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15169 65.929 NaN 1538900 35 0 198140 0.261 -1 TLDMHEEEI 9 117 566.745050598699 1131.4755482641979 2 566.7451782226562 MULTI HCD FTMS 0 0 0 15167 492618 0.9481791441653372 -1 0.02936553955078125 2 Oxidation (M) _TLDM(Oxidation (M))HEEEI_ ENST00000544751.1_1_12:10205211-10205388:+|nuORF 26.88365393820708 0.12808753336095696 1 {[YD]|[{M(Oxidation (M))|F}M]}S[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}VT{I|L} 9 -1 + 44.79 0 0 3.9586 3.9586 88.082 0 0 0 9.948223638114051 12.969837217489513 9.948223638114051 22.900990676322902 0 0.4247425010840047 1.3979400086720375 0.3252574989159953 0 {[YD]|[{M(Oxidation (M))|F}M]}S[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}VT{I|L};{I|L}{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]{I|L}NA[MT];{I|L}T[C(Carbamidomethyl (C))C]A[YV]A[MT];{I|L}{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]{I|L}NG[{M(Oxidation (M))|F}V];TCC(Carbamidomethyl (C)){[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{I|L}{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]{I|L}[SG]A{[DS]|[MA]|[CV]|TT};{I|L}T[C(Carbamidomethyl (C))C]A[YV]G[{M(Oxidation (M))|F}V];{I|L}{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]{I|L}NT{[DS]|[MA]|[CV]|TT};{I|L}T[C(Carbamidomethyl (C))C]A[YV]T{[DS]|[MA]|[CV]|TT};{I|L}{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]{I|L}GGA[MT] 3.9586;1.9346;1.9232;1.5125;1.4526;1.4492;1.3957;1.3792;1.3678;1.1208 -;-;-;-;-;-;-;-;-;- 1223 NaN NaN 316078.1 NaN 11978 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15170 65.933 NaN 1987500 35 0 830310 0.261 + 5049 FDQKDFYDM 9 96 604.7484973986703 NaN 0 604.7681274414062 PEAK HCD FTMS 0 0 0 15167 28411.029296875 1 0 0 3 Unmodified _FDQKDFYDM_ REV__ENSG00000104375|ENST00000419617|STK3;REV__ENST00000517832.1_1_8:99446484-99539107:-|nuORF;REV__ENST00000520440.1_1_8:99538957-99560377:-|nuORF;REV__nc|ENSG00000104375|Q13188-2|STK3 11.640296217721598 0.23883959125015683 1 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F} 6 -1 27.898 0 0 2.3104 0 0 165.03947088094384 277.0830664754162 442.12253735636006 0 0 0 0 0 0 0 0 0.805462187404089 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F} 2.3104 - 466 + NaN NaN 385652.6 NaN 11979 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15171 65.936 NaN 496910 35 0 72310 0.261 -1 FPLLPDMPPM 10 66 595.2862667274787 1188.5579805217574 2 595.3020629882812 MULTI HCD FTMS 0 0 0 15167 21272.693359375 0.0770064008330444 -6 0.180023193359375 4 2 Oxidation (M) _FPLLPDM(Oxidation (M))PPM(Oxidation (M))_ ENSG00000176542|ENST00000316407|USF3 8.745405648335112 0.42901288225909884 1 [YV]P[WH]VYPE 9 -1 + 37.571 0 0 3.161 3.161 79.158 0 0 0 10.174837133936315 1.9188552623891297 1.9188552623891297 0.15794267183232336 0 0 1.6989700043360187 0 0 [YV]P[WH]VYPE;[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}M{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};{M(Oxidation (M))|F}DP[EP]M{I|L}PM{I|L};{M(Oxidation (M))|F}PD[EP]M{I|L}PM{I|L} 3.161;3.1477;2.9996;1.8679;1.4665 -;-;-;-;- 177 NaN NaN 168271.3 NaN 11980 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15172 65.939 NaN 247710 35 0 36200 0.261 + 28100 TIAEIKNLF 9 51 524.8053412327444 1047.5961295322886 2 524.805419921875 MULTI HCD FTMS 0 0 0 15167 57706.375 0.35414718671174206 -2 0.05876922607421875 5 Unmodified _TIAEIKNLF_ ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF 60.07390631473393 0.0174780869009295 1 [{I|L}T]AE 4 5 53.984 0 0 5.1532 0 0 0 630.3614853274636 630.3614853274636 25.273109370204452 0 0 0 0 1.4247425010840047 2 0.6549471895720984 0 + [{I|L}T]AE 5.1532 + + 33 NaN NaN 114484.9 NaN 11981 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15173 65.943 NaN 515140 35 0 38220 0.261 + 19281 NLPVKQWYF 9 81 597.8186399382005 1193.6227269432009 2 597.8189697265625 MULTI HCD FTMS 0 0 0 15167 125694.34375 0.9087525023505517 -2 0.05876922607421875 6 Unmodified _NLPVKQWYF_ ENSG00000088035|ENST00000263440|ALG6 25.399314129420986 0.14091189997036632 1 {[QV]|[N{I|L}]|[RA]|[KV]}[VP][KQ]WY{M(Oxidation (M))|F} 9 0 + 33.591 0 0 2.8142 2.8142 87.958 0 0 0 9.127262061223156 4.1542372206566895 4.1542372206566895 33.59121221298381 0 1 2 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}[VP][KQ]WY{M(Oxidation (M))|F} 2.8142 + + 151 NaN NaN 166478.4 NaN 11982 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15174 65.946 NaN 132340 35 0 8632.3 0.261 + 7946 GEAAWNNMQVF 11 55 633.7841428155489 NaN 0 633.7177734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _GEAAWNNMQVF_ ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000164574|Q86SR1-4|GALNT10 10.799506525563784 0.3114850535502259 1 W 1 10 15.797 0 0 1.2482 0 0 342.11789393012265 734.3303316705686 1076.4482256006913 0 0 0 0 0 0.8807196863200843 0 0 0 + W 1.2482 + + 27 + NaN NaN 103899.6 NaN 11983 3189 15167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15176 65.951 NaN 3016200 35 0 465170 0.327 + 3575 EKDKEDQPQ 9 118 558.7627402255438 1115.5109275178875 2 558.7630004882812 MULTI HCD FTMS 0 0 0 15175 2508547.75 1 0 0 1 Unmodified _EKDKEDQPQ_ ENSG00000068394|ENST00000156109|GPKOW 45.739877483867886 0.03899552410870734 1 AENE[HM]T{I|L} 8 8 65.976 0 0 5.9144 0 0 172.08494765449376 0 172.08494765449376 0 29.76203644159419 0 0 0 2.579689690656103 0 1.2134679910804405 1.024227503252014 AENE[HM]T{I|L} 5.9144 - 5249 NaN NaN 552018.8 NaN 11984 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15177 65.955 NaN 2753700 35 0 1008300 0.261 -1 EVMAMFEQM 9 106 574.227266486537 1146.439980039874 2 574.2276000976562 MULTI HCD FTMS 0 0 0 15175 1546126.5 1 0 0 2 2 Oxidation (M) _EVMAM(Oxidation (M))FEQM(Oxidation (M))_ ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000588422.3_1_19:39109887-39111017:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V[{I|L}T] 5 -1 25.93 0 0 2.2618 0 0 521.077871740849 0 521.077871740849 0 11.875306316958499 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V[{I|L}T] 2.2618 - 230 + NaN NaN 498919.8 NaN 11985 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15178 65.959 NaN 576050 35 0 86530 0.261 + 34379 YPEHISNIISL 11 79 643.3429158803186 1284.6712788274372 2 643.343017578125 MULTI HCD FTMS 0 0 0 15175 388662.21875 0.40618620881014383 7 -0.20546722412109375 3 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 38.61474834105838 0.1458715177421877 1 N{I|L}{I|L}S{I|L} 5 6 56.326 0 0 4.3844 0 0 726.3351307599625 0 726.3351307599625 0 42.63695830312702 0 0 0 1 0 0.4247425010840047 0.6505149978319906 + N{I|L}{I|L}S{I|L} 4.3844 + + 423 NaN NaN 175821.9 NaN 11986 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15179 65.962 NaN 623280 35 0 85766 0.261 -1 FPAGYMYPSM 10 86 590.2457738184258 1178.4769947036516 2 590.246826171875 MULTI HCD FTMS 0 0 0 15175 130216.59375 0.5982666347834708 22 -0.5908966064453125 4 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 32.30548876998284 0.21217886106551395 1 {[WN]|[YH]}[DP]M 5 -1 25.77 0 0 2.1867 0 0 0 532.2204669858951 532.2204669858951 -2.140785525501414 0 -2.140785525501414 0 0 0.7302046884880937 1.6989700043360187 0 0.3494850021680094 {[WN]|[YH]}[DP]M 2.1867 - 355 NaN NaN 173018.2 NaN 11987 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15180 65.965 NaN 244170 35 0 16503 0.261 + 4989 FAYIKYDNEL 10 59 638.3162774777584 1274.6180020223167 2 638.8179931640625 MULTI HCD FTMS 0 0 0 15175 63486.53515625 0.09537647685320072 17 -0.47373199462890625 5 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 12.240655878213236 0.39661705172222156 1 DYS{I|L} 4 8 40.235 0 0 3.1566 0 0 778.4186268537125 0 778.4186268537125 0 28.24539712336197 0 0 0 0.75 0 0.3807196863200844 0 DYS{I|L} 3.1566 - 25 NaN NaN 119974.1 NaN 11988 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15181 65.969 NaN 89292 35 0 6938.3 0.264 + 12679 KWIKLLLLII 10 51 418.29737454469506 NaN 0 418.2973937988281 PEAK HCD FTMS 0 0 0 15175 65513.8046875 0.6943886357567088 1 -0.02606201171875 6 Unmodified _KWIKLLLLII_ REV__ENSG00000105438|ENST00000330720|KDELR1;REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF;REV__ENST00000599084.1_1_19:48892794-48894615:-|nuORF 0 0.34018428902965525 1 {I|L} 1 -1 6.9897 0 0 0.83751 0 0 190.13282174388388 528.3410598615548 718.4738816054387 0 0 0 0 0 0 0 0 0 {I|L} 0.83751 + + 1 + NaN NaN 92712.3 NaN 11989 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15182 65.972 NaN 237730 35 0 26300 0.261 + 27521 TAAENEFVAL 10 66 532.7665985022375 1063.5186440712748 2 532.7672119140625 MULTI HCD FTMS 0 0 0 15175 52346.52734375 0.21353551821906294 -3 0.08473968505859375 7 Unmodified _TAAENEFVAL_ CON__O95678;ENSG00000170454|ENST00000252245|KRT75 29.84058131909904 0.23356904650364865 1 {M(Oxidation (M))|F}VA{I|L} 4 6 37.167 0 0 3.4947 0 0 615.249315330275 0 615.249315330275 0 24.06804392152253 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}VA{I|L} 3.4947 + + 38 NaN NaN 115391.3 NaN 11990 3190 15175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15184 65.977 NaN 1866900 35 0 107310 0.327 + 27176 SYNNFFRMF 9 114 621.2738121112648 1240.5330712893294 2 621.2740478515625 MULTI HCD FTMS 0 0 0 15183 1317975 0.2607544195794276 -7 0.19594573974609375 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 107.59 0 0 8.6725 0 0 0 208.03667627506096 208.03667627506096 69.8601836473197 0 0 0 0 2.6861818737241734 2 0.9143943297944485 0.7614393726401688 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8.6725 - 9265 + NaN NaN 364407.1 NaN 11991 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15185 65.981 NaN 1241200 35 0 207140 0.263 + 28831 TVFDQPQE 8 83 482.2244184827376 962.4342840322752 2 482.2245178222656 MULTI HCD FTMS 0 0 0 15183 210206.125 0.826341572778352 1 -0.02606201171875 2 Unmodified _TVFDQPQE_ DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;ENSG00000103423|ENST00000262375|DNAJA3;ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;nc|ENSG00000103423|Q96EY1-3|DNAJA3 85.27202061508552 0.016688148945806582 1 TAAENE{M(Oxidation (M))|F} 7 7 101.49 0 0 10.546 0 0 0 197.09324060611564 197.09324060611564 66.71297969154674 0 0 0 0 2.274227503252014 1.6989700043360187 2.055462187404089 0.805462187404089 TAAENE{M(Oxidation (M))|F} 10.546 - 4186 + NaN NaN 264717.2 NaN 11992 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15186 65.985 NaN 1091500 35 0 60383 0.261 + 19013 NAVHLYELL 9 79 536.295054174229 1070.575555415258 2 536.2954711914062 MULTI HCD FTMS 0 0 0 15183 245217.703125 0.856594011785177 -2 0.052032470703125 3 Unmodified _NAVHLYELL_ ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1 41.8396318013385 0.056899836730939755 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}DH{I|L} 9 7 + 60.799 0 0 5.6791 5.6791 82.724 0 0 0 17.2046792403399 14.35768298030407 14.35768298030407 0.4845500650402812 0 0.1989700043360188 1.6989700043360187 0.3252574989159953 1.3494850021680094 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}DH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N[HD]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG[HD]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG{I|L}DH{I|L};[Y{I|L}]A{I|L}N{I|L}DH{I|L};[Y{I|L}]A{I|L}N[HD]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}N{I|L}DH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}N[HD]{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[HK]{NN|[MP]|[D{I|L}]|[EV]}E{I|L}{I|L};[Y{I|L}]A{I|L}GG[HD]{I|L}{I|L} 5.6791;5.6338;3.9802;3.5584;3.2008;3.1555;3.1194;3.0741;1.8513;1.5019 -;-;-;-;-;-;-;-;-;- 1098 NaN NaN 249146 NaN 11993 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15187 65.988 NaN 419950 35 0 108440 0.261 + -1 GFIICWLIMAK 11 64 456.5784833434032 1366.7136206304097 3 456.9129638671875 MULTI HCD FTMS 0 0 0 15183 164744.6875 0.07720885669210892 28 -0.7274093627929688 4 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 7.0370850670814 0.388058401935362 1 {I|L}ND[YQ]{I|L}{I|L}W 8 -1 47.032 0 0 3.4412 0 0 303.1696034162125 0 303.1696034162125 0 38.959959909039625 0 0 0 1.305462187404089 0 0 0.4247425010840047 {I|L}ND[YQ]{I|L}{I|L}W 3.4412 - 160 NaN NaN 138476.5 NaN 11994 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15188 65.991 NaN 427480 35 0 112930 0.261 + 33725 YLDIQPSPDQS 11 71 421.53463828374885 1261.5820854514466 3 421.869384765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLDIQPSPDQS_ ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-1|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-4|RORA 13.614867670302875 0.33845562336951207 1 {I|L}YD{I|L} 4 9 64.68 0 0 5.1269 0 0 0 754.3019556693781 754.3019556693781 46.721675119240516 0 0 0 0 1.274227503252014 2 0 0 {I|L}YD{I|L} 5.1269 - 88 + NaN NaN 144159.9 NaN 11995 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15189 65.995 NaN 195560 35 0 53893 0.261 + 7115 FRSLYRYPL 9 45 405.56084954625214 NaN 0 405.56072998046875 PEAK HCD FTMS 0 0 0 15183 73570.265625 1 0 0 6 Unmodified _FRSLYRYPL_ ENST00000529121.2_1_11:61102034-61102169:+|nuORF 7.289230182591677 0.2599242500475609 1 H 1 9 6.9897 0 0 0.86388 0 0 283.83189088762305 385.18760095767817 669.0194918453012 0 0 0 0 0 0 0 0 0 H 0.86388 - 8 + NaN NaN 102846.1 NaN 11996 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15190 65.998 NaN 84772 35 0 4413.6 0.261 + -1 MRKMLLTF 8 36 528.2898559570312 NaN 0 528.2898559570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _M(Oxidation (M))RKMLLTF_ REV__ENST00000304337.2_1_4:153690730-153690883:-|nuORF 2.577480529830294 0.38822285293237185 1 T 1 -1 1.5938 0 0 0.15113 0 0 788.4385818830093 162.05661951236564 950.4952013953749 0 0 0 0 0 0 0 0 0 T 0.15113 + + 2 + NaN NaN 88759 NaN 11997 3191 15183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15192 66.003 NaN 1451300 35 0 176870 0.327 + 5169 FFDAELSQM 9 99 552.2390895993532 1102.4636262655063 2 552.2388305664062 MULTI HCD FTMS 0 0 0 15191 646034.5 0.18791510094261588 32 -0.818603515625 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 86.653 0 0 7.86 7.86 91.196 0 0 0 2.6760624017703094 65.7319095436452 2.6760624017703094 9.208187539523749 0 3.048455006504028 0 1.5356668758921828 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP];{[QS]|[NT]}PYEA[YV]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{M(Oxidation (M))|F};{[QS]|[NT]}PY[TP][YT]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{M(Oxidation (M))|F} 7.86;7.0247;4.6094;3.7742;2.654;2.4178;1.4389;1.3015;1.1195 +;-;-;-;-;-;-;-;- + 1677 NaN NaN 296864.2 NaN 11998 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15193 66.007 NaN 1055800 35 0 81696 0.261 + 13224 KYMDIEFDF 9 97 612.267984504842 1222.521416076484 2 612.2681274414062 MULTI HCD FTMS 0 0 0 15191 394907.5625 0.1958745913260813 9 -0.25800323486328125 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 76.82478488871298 0.006879825292024087 1 QD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 3 65.372 0 0 5.3473 0 0 310.131151267775 0 310.131151267775 0 49.90378101471016 0 0 0 2.2302046884880937 0 1.024227503252014 0 QD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.3473 - 1666 NaN NaN 246851.4 NaN 11999 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15194 66.011 NaN 329270 35 0 99298 0.264 + 33847 YLKYRQFPF 9 63 421.2287851562138 1260.6645260688415 3 421.2289123535156 MULTI HCD FTMS 0 0 0 15191 52749.10546875 0.22213869032676853 3 -0.09178924560546875 3 Unmodified _YLKYRQFPF_ ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1 8.593279151180031 0.2858735984551981 1 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.7443 0 0 1095.5854072717696 0 1095.5854072717696 0 0.8187876199097843 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7443 + + 21 + NaN NaN 136230.8 NaN 12000 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15195 66.014 NaN 405120 35 0 36187 0.261 + 19282 NLPVKQWYF 9 79 597.8186399382005 1193.6227269432009 2 597.8189086914062 MULTI HCD FTMS 0 0 0 15191 130103.796875 0.9406322309190157 1 -0.029510498046875 4 Unmodified _NLPVKQWYF_ ENSG00000088035|ENST00000263440|ALG6 39.957323273324995 0.06554068735427583 1 {[QV]|[N{I|L}]|[RA]|[KV]}[VP][KQ]WY{M(Oxidation (M))|F} 9 0 + 29.146 0 0 2.4418 2.4418 87.532 0 0 0 20.294315306422778 5.359302669338607 5.359302669338607 29.1458340870247 0 1.555462187404089 2 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}[VP][KQ]WY{M(Oxidation (M))|F} 2.4418 + + 57 + NaN NaN 136568.9 NaN 12001 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15196 66.017 NaN 245780 35 0 30329 0.261 + 35473 YYFDSYAHF 9 52 606.7532896229152 1211.4920263126303 2 606.7537231445312 MULTI HCD FTMS 0 0 0 15191 44949.69921875 0.3457293937929573 5 -0.15334320068359375 5 Unmodified _YYFDSYAHF_ ENSG00000111218|ENST00000382622|PRMT8;ENSG00000126457|ENST00000454376|PRMT1;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1 23.1484247019978 0.1603590852062899 1 YY{M(Oxidation (M))|F}D 4 5 43.232 0 0 3.5685 0 0 0 620.2523287408811 620.2523287408811 20.044321917401078 0 0 0 0 0.805462187404089 2 0.3494850021680094 0 + YY{M(Oxidation (M))|F}D 3.5685 + + 79 + NaN NaN 118941.6 NaN 12002 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15197 66.021 NaN 85328 35 0 26190 0.264 + 20573 PEGLDVQL 8 37 435.73166116245534 869.4487693917107 2 435.7323303222656 MULTI HCD FTMS 0 0 0 15191 53836.8515625 0.5258495576902723 5 -0.15334320068359375 6 Unmodified _PEGLDVQL_ REV__ENSG00000126461|ENST00000360565|SCAF1;REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 21.74664581756881 0.4337896562907935 1 DVQ{I|L} 4 -1 40.433 0 0 4.6504 0 0 396.20018202949376 0 396.20018202949376 0 23.44335023848103 0 0 0 1 0 0 0 DVQ{I|L} 4.6504 + + 35 NaN NaN 89187.6 NaN 12003 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15198 66.024 NaN 351230 35 0 41609 0.261 + 34471 YPFESAEAQL 10 64 577.7717863530306 1153.5290197728611 2 577.7723388671875 MULTI HCD FTMS 0 0 0 15191 52747.2109375 0.19267602336297482 -8 0.22200775146484375 7 Unmodified _YPFESAEAQL_ ENSG00000167325|ENST00000300738|RRM1 20.41453444215458 0.3201613495159799 1 EAQ{I|L} 4 6 39.073 0 0 3.3872 0 0 694.2978191787246 0 694.2978191787246 0 35.09348008424516 0 0 0 0.7134679910804405 0 0 0 + EAQ{I|L} 3.3872 + + 58 NaN NaN 131759.3 NaN 12004 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15199 66.027 NaN 63271 35 0 4437.6 0.263 -1 ERMHTWNESF 10 45 451.5286328120415 1351.5640690363246 3 451.5291442871094 MULTI HCD FTMS 0 0 0 15191 47217.625 0.4320412699313628 5 -0.15334320068359375 8 Oxidation (M) _ERM(Oxidation (M))HTWNESF_ ENST00000300305.7_1_21:36265232-36421152:-|nuORF 1.4551175022131473 0.4676015363898197 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.0343 0 0 1186.4849502392526 0 1186.4849502392526 0 3.521825181113625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0343 + + 4 + NaN NaN 88307.1 NaN 12005 3192 15191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15201 66.032 NaN 570810 35 0 54393 0.327 -1 YPDTDVILM 9 75 541.7574008348665 1081.500248736533 2 541.7584228515625 MULTI HCD FTMS 0 0 0 15200 158310.796875 0.2337094761585167 -14 0.40219879150390625 1 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 36.04419817259434 0.08350412372117409 1 P{I|L}E[KG]{I|L}{I|L}{M(Oxidation (M))|F} 8 -1 49.373 0 0 4.5653 0 0 165.98110202200127 0 165.98110202200127 0 25.420787969958454 0 0 0 1.4247425010840047 0 0 0 P{I|L}E[KG]{I|L}{I|L}{M(Oxidation (M))|F} 4.5653 - 510 + NaN NaN 169031.8 NaN 12006 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15202 66.037 NaN 361300 35 0 31983 0.261 + 9813 HYNWLIYHL 9 71 629.8219077281749 1257.6292625231497 2 630.3245849609375 MULTI HCD FTMS 0 0 0 15200 197637.78125 0.23337793451744188 30 -0.7629623413085938 2 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 96.11092074494114 0.00436583732602279 1 HYNW{I|L}{I|L}YH{I|L} 9 0 + 82.251 0 0 6.5401 6.5401 84.302 0 0 0 0.6172676206017371 0.6172676206017371 0.6172676206017371 0.6172676206017371 0 2.7134679910804405 1.5228787452803376 0 0.3054621874040891 + + HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}YH{I|L} 6.5401;6.4911;6.4323;5.5651;4.0458 +;-;+;-;- + 174 + NaN NaN 127563.2 NaN 12007 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15203 66.04 NaN 1180000 35 0 305230 0.262 + 24698 RYLTVAAVF 9 88 520.3002137463006 1038.5858745594012 2 520.8020629882812 MULTI HCD FTMS 0 0 0 15200 127581.046875 0.009594584156251312 80 -2.081024169921875 3 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 22.736283301280096 0.1639198954644489 1 MAAV{M(Oxidation (M))|F} 5 5 42.664 0 0 4.1079 0 0 501.315721580275 0 501.315721580275 0 33.20005403734866 0 0 0 1.1861818737241734 0 0 0 MAAV{M(Oxidation (M))|F} 4.1079 - 182 NaN NaN 264683 NaN 12008 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15204 66.044 NaN 418920 35 0 67220 0.261 + 33469 YHNNTAFSTK 10 77 591.780412614783 NaN 0 591.7947998046875 PEAK HCD FTMS 0 0 0 15200 23879.97265625 1 0 0 4 Unmodified _YHNNTAFSTK_ ENSG00000171819|ENST00000376819|ANGPTL7 10.823927491677226 0.33092050725491123 1 {I|L}T 2 9 10.551 0 0 0.89297 0 0 131.06315818173613 833.3269747369749 964.3901329187111 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}T 0.89297 - 36 + NaN NaN 144827.8 NaN 12009 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15205 66.047 NaN 399250 35 0 43690 0.261 + 16493 LTDFINEQP 9 68 538.7666763056175 1075.5187996780348 2 538.7670288085938 MULTI HCD FTMS 0 0 0 15200 71728.359375 0.32835269710968173 5 -0.1499786376953125 5 Unmodified _LTDFINEQP_ REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF 36.506200033944 0.08138327636155518 1 {I|L}T{[MG]|[TS]}[WP]{M(Oxidation (M))|F}A[PG] 10 -1 + 41.686 0 0 3.8759 3.8759 83.035 0 0 0 32.08220305641312 7.269987279362624 7.269987279362624 7.2847001269133855 0 1.1549471895720984 0 0.8252574989159953 0 {I|L}T{[MG]|[TS]}[WP]{M(Oxidation (M))|F}A[PG];{I|L}T{[MG]|[TS]}[WP]{M(Oxidation (M))|F}[QP];{I|L}T{[MG]|[TS]}[WP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[TA]{[ET]|[MV]}[WP]{M(Oxidation (M))|F}A[PG];[YN]{I|L}[WP]{[ET]|[MV]}[PG];{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[WP]{[ET]|[MV]}[PG];[TA]A{M(Oxidation (M))|F}[WP][NG]{[NV]|[RG]};[YN]{I|L}[WP][NG]{[NV]|[RG]};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[WP][NG]{[NV]|[RG]};[{I|L}T][WP][WC(Carbamidomethyl (C))]T{I|L} 3.8759;3.1986;2.1538;1.5485;1.4973;1.406;1.3611;0.45007;0.35883;0.24152 -;-;-;-;-;-;-;-;-;- 164 + NaN NaN 141809.7 NaN 12010 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15206 66.05 NaN 329790 35 0 43719 0.261 + -1 CALKCVFLT 9 62 556.2844082924432 1110.5542636516864 2 556.2852172851562 MULTI HCD FTMS 0 0 0 15200 52715.80078125 0.474700321622536 6 -0.17948150634765625 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))ALKC(Carbamidomethyl (C))VFLT_ REV__ENSG00000081985|ENST00000674203|IL12RB2;REV__nc|ENSG00000081985|Q99665-2|IL12RB2;REV__nc|ENSG00000081985|Q99665-3|IL12RB2 7.910154910731844 0.2910521888787154 1 WWNE{M(Oxidation (M))|F}VT 7 -1 39.288 0 0 3.5377 0 0 0 145.0968788845037 145.0968788845037 16.2282696247047 0 0 0 0 0 0 0.75 0.9604093769761877 WWNE{M(Oxidation (M))|F}VT 3.5377 - 224 NaN NaN 129554.4 NaN 12011 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15207 66.054 NaN 333320 35 0 51822 0.263 + 21558 PYLWWKKYI 9 59 432.9090277956166 1295.70525398705 3 433.2437438964844 MULTI HCD FTMS 0 0 0 15200 62879.0703125 0.7112394719424117 -5 0.13697052001953125 7 Unmodified _PYLWWKKYI_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 21.536976647645854 0.1742816388551942 1 PY 2 7 37.435 0 0 2.8892 0 0 0 1032.566336615686 1032.566336615686 36.721675119240516 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 + PY 2.8892 + + 10 + NaN NaN 142848.2 NaN 12012 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15208 66.057 NaN 219340 35 0 18174 0.261 + -1 PMAEELNL 8 64 466.72297268479525 931.4313924363905 2 466.7229919433594 MULTI HCD FTMS 0 0 0 15200 88998.96875 0.6695939011702746 2 -0.06227874755859375 8 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.50814828952472 1 {I|L}N{I|L} 3 -1 29.693 0 0 3.1879 0 0 573.2108193859982 0 573.2108193859982 0 15.713337517843655 0 0 0 0.3494850021680094 0 0 0 {I|L}N{I|L} 3.1879 + + 38 NaN NaN 121987.8 NaN 12013 3193 15200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15210 66.062 NaN 13456000 35 0 2408200 0.327 + 27531 TAAENEFVTL 10 89 547.7716926644357 1093.5288323956713 2 547.7728271484375 MULTI HCD FTMS 0 0 0 15209 10829610 0.3919040775342288 6 -0.1761016845703125 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 228.36842504977758 1.5959189353506314E-32 1 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 121.25 0 0 11.088 11.088 96.753 0 0 0 16.264100213633768 16.53212513775344 16.264100213633768 16.264100213633768 0 2.9049471895720984 1.3010299956639813 1.7416440611282624 1.841129063296272 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[PG]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}VT{I|L};[TA]A{M(Oxidation (M))|F}WWVT{I|L} 11.088;9.6009;9.5175;8.7588;8.5664;8.2279;6.9958;5.7062;5.5878;5.0437 +;-;-;-;-;-;-;-;-;- + 2278 NaN NaN 582045 NaN 12014 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15211 66.066 NaN 1466800 35 0 347130 0.261 + 20117 NYIPYLTKL 9 75 562.820955992304 1123.627359051408 2 562.8211669921875 MULTI HCD FTMS 0 0 0 15209 823333.5625 0.5768838192804503 3 -0.09430694580078125 2 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 107.09958533191995 0.0034159042678574016 1 [YN]{I|L}PY{I|L}TK{I|L} 9 0 + 91.393 0 0 8.1337 8.1337 95.069 0 0 0 13.636218907515314 13.636218907515314 13.636218907515314 23.65479093331686 0 2.4489700043360187 1.6989700043360187 0 1.7059771852360797 + + [YN]{I|L}PY{I|L}TK{I|L};[YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[YN]{I|L}[{I|L}V]{I|L}[YN]{I|L};[YN]{I|L}[{I|L}V]{I|L}{I|L}[YN];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[Q{I|L}]{I|L}TK{I|L} 8.1337;6.0285;5.2219;4.3104;3.3262 +;-;-;-;- + 265 NaN NaN 308286.9 NaN 12015 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15212 66.07 NaN 1659100 35 0 131760 0.261 + 1207 AYLLNLNHL 9 96 535.8033386786182 1069.5921244240362 2 535.8038330078125 MULTI HCD FTMS 0 0 0 15209 835868.8125 1 0 0 3 Unmodified _AYLLNLNHL_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 179.22989800431262 1.129651853483991E-12 1 AY{I|L}{I|L}N{I|L}NH{I|L} 9 0 + 99.408 0 0 9.294 9.294 91.37 0 0 0 6.602196946754049 6.602196946754049 6.602196946754049 6.602196946754049 0 2.7971062485323515 1.6989700043360187 0 1.4604093769761874 + + AY{I|L}{I|L}N{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}NH{I|L};AY{I|L}{I|L}GG{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{I|L}NH{I|L};AY{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{I|L}GGH{I|L};AY{I|L}{I|L}N[HN]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG{I|L}NH{I|L};AY{I|L}{I|L}GG[HN]{I|L}{I|L} 9.294;8.6767;8.4331;8.2356;8.0771;7.8158;7.3747;7.1849;6.9513;6.324 +;+;-;-;-;-;-;-;-;- + 1168 + NaN NaN 331789.9 NaN 12016 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15213 66.073 NaN 950470 35 0 82548 0.261 -1 0 97 503.3062114231276 502.2989349565276 1 503.3063659667969 MULTI HCD FTMS 0 0 0 15209 416861.5 0.006487400239811647 110 -2.8831558227539062 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 2.6866 0 0 337.2201823703932 0 337.2201823703932 0 7.904916540910188 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.6866 - 20 + NaN NaN 228089.5 NaN 12017 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15214 66.076 NaN 1321600 35 0 109620 0.261 + 1454 AYSPRFLYI 9 105 565.3054826581144 1128.5964123830288 2 565.3054809570312 MULTI HCD FTMS 0 0 0 15209 556110.8125 0.4692118411038793 -3 0.0850982666015625 5 Unmodified _AYSPRFLYI_ ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 75.76082778847304 0.0072241045649327805 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPR{M(Oxidation (M))|F}{I|L}Y{I|L} 9 0 + 71.142 0 0 6.3036 6.3036 89.522 0 0 0 24.934239665113722 49.804016742640286 24.934239665113722 10.268024924119672 0 2.004432191740108 2 1.079689690656103 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPR{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPR{M(Oxidation (M))|F}{I|L}{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}APR{M(Oxidation (M))|F}{I|L}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}APR{M(Oxidation (M))|F}{I|L}{I|L}Y 6.3036;5.3938;3.7358;2.826 +;-;-;- + 452 NaN NaN 295367 NaN 12018 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15215 66.08 NaN 333920 35 0 35394 0.261 + 7482 FVYLNHCEN 9 70 569.7536201404158 1137.4926873476315 2 569.754638671875 MULTI HCD FTMS 0 0 0 15209 73831.7578125 0.2308777859103564 5 -0.14995574951171875 6 Unmodified _FVYLNHCEN_ REV__ENST00000267339.6_1_13:111531801-111531978:-|nuORF 4.3292370932331545 0.3181982124262546 1 {I|L}[NS]W 4 -1 15.177 0 0 1.3343 0 0 0 634.2114962213499 634.2114962213499 1.1978875828839364 0 0 0 0 0.5 0 0 0 {I|L}[NS]W 1.3343 - 55 + NaN NaN 139042.4 NaN 12019 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15216 66.083 NaN 135630 35 0 25193 0.261 -1 TAMDVVYAL 9 52 499.7466991268183 997.4788453204367 2 499.7469787597656 MULTI HCD FTMS 0 0 0 15209 51483.8515625 0.05662515751233926 -29 0.79412841796875 7 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 1 VYA{I|L} 4 -1 37.211 0 0 3.7305 0 0 533.2147469371288 0 533.2147469371288 0 16.242209500285014 0 0 0 1.305462187404089 0 0 0 VYA{I|L} 3.7305 + + 89 NaN NaN 104487.9 NaN 12020 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15217 66.086 NaN 104980 35 0 13957 0.261 -1 WDECCDCVGM 10 45 645.698489898472 NaN 0 645.81396484375 PEAK HCD FTMS 0 0 0 15209 10693.25390625 0.9964610269328327 -1 0.0295257568359375 8 2 Carbamidomethyl (C),Oxidation (M) _WDEC(Carbamidomethyl (C))CDC(Carbamidomethyl (C))VGM(Oxidation (M))_ ENSG00000128791|ENST00000262120|TWSG1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104679.9 NaN 12021 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15218 66.09 NaN 138120 35 0 11377 0.264 + 30325 VKVYVNGVL 9 49 495.8024983044086 989.5904436756172 2 495.8027038574219 MULTI HCD FTMS 0 0 0 15209 31184.2421875 0.20578997372294805 7 -0.19896697998046875 9 Unmodified _VKVYVNGVL_ REV__ENST00000590135.5_1_19:36235145-36235544:-|nuORF 7.910154910731844 0.2910521888787154 1 V{I|L} 2 -1 23.711 0 0 2.3961 0 0 759.4291902059113 0 759.4291902059113 0 4.542425094393252 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.3961 + + 32 NaN NaN 104998.6 NaN 12022 3194 15209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15220 66.095 NaN 1259600 35 0 184520 0.327 + 28721 TSSEHDQVTL 10 103 558.7627402255438 1115.5109275178875 2 558.762939453125 MULTI HCD FTMS 0 0 0 15219 559146.75 0.22289659425458416 5 -0.14334869384765625 1 Unmodified _TSSEHDQVTL_ REV__ENSG00000177873|ENST00000432264|ZNF619;REV__ENST00000494154.6_1_3:40523704-40529729:+|nuORF;REV__nc|ENSG00000177873|Q8N2I2-2|ZNF619;REV__nc|ENSG00000177873|Q8N2I2-4|ZNF619;REV__nc|ENSG00000177873|Q8N2I2|ZNF619 36.506200033944 0.17572556831573002 1 T{M(Oxidation (M))|F}VT{I|L} 5 -1 51.916 0 0 4.654 0 0 536.1989613263687 0 536.1989613263687 0 3.358410700753126 0 0 0 1.1549471895720984 0 0.4793036574208875 0 T{M(Oxidation (M))|F}VT{I|L} 4.654 - 1035 NaN NaN 284271.8 NaN 12023 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15221 66.099 NaN 1964000 35 0 372640 0.261 + 20337 NYRDTFFNL 9 100 595.2862667274787 1188.5579805217574 2 595.302001953125 MULTI HCD FTMS 0 0 0 15219 276245.78125 1 0 0 2 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 80.6760300276096 0.005633624786464751 1 [YV][NG]DT{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 9 5 52.921 0 0 4.4526 0 0 0 127.08715586938241 127.08715586938241 19.610472741640628 0 0 0 0 1.555462187404089 1.6989700043360187 0.6203715150305281 0.3494850021680094 [YV][NG]DT{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 4.4526 - 2088 NaN NaN 379361 NaN 12024 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15222 66.103 NaN 848510 35 0 79989 0.262 -1 0 78 502.23069998583856 1002.4468470384771 2 502.2314147949219 MULTI HCD FTMS 0 0 0 15219 349839.78125 0.3496770066034261 10 -0.287506103515625 3 NaN NaN 1 {I|L}D{M(Oxidation (M))|F}DPE 6 -1 56.441 0 0 5.6304 0 0 268.1535359662971 0 268.1535359662971 0 30.73572462447597 0 0 0 1.8441876774005248 0 0.6139829889124311 0 {I|L}D{M(Oxidation (M))|F}DPE 5.6304 - 293 NaN NaN 211534.1 NaN 12025 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15223 66.106 NaN 1453500 35 0 257260 0.261 -1 0 93 604.7680411660131 1207.521529398826 2 604.7686157226562 MULTI HCD FTMS 0 0 0 15219 375520.75 0.11783281498650175 35 -0.9099044799804688 4 NaN NaN 1 C(Carbamidomethyl (C))D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 61.61 0 0 5.1022 0 0 278.16343886543126 0 278.16343886543126 0 50.64047179662451 0 0 0 1.805462187404089 0 0 0.9634679910804405 C(Carbamidomethyl (C))D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.1022 - 1319 NaN NaN 305507.3 NaN 12026 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15224 66.109 NaN 443170 35 0 24376 0.261 + 6332 FPFYYEIKM 9 69 627.299003034021 1252.5834531348419 2 627.2991333007812 MULTI HCD FTMS 0 0 0 15219 311641.875 0.3625161972932281 9 -0.254669189453125 5 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 51.41523569358685 0.02959097413485123 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE 9 6 + 64.575 0 0 5.1553 5.1553 81.906 0 0 0 0.6246936830414995 0.6246936830414995 0.6246936830414995 0.6246936830414995 0 0.7742275032520141 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[{I|L}P]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}[{I|L}P]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{[DS]|[MA]|[CV]|TT}[DG]VPE;{M(Oxidation (M))|F}PV[DG]{[DS]|[MA]|[CV]|TT}E{I|L}K{M(Oxidation (M))|F};{[HG]|PP}V{M(Oxidation (M))|F}NYE{I|L}K{M(Oxidation (M))|F} 5.1553;5.1055;4.7871;4.4202;4.2474;3.1809;2.6411;2.4492;2.3993;2.2455 -;+;+;-;-;-;-;-;-;- + 1441 NaN NaN 146895.1 NaN 12027 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15225 66.113 NaN 959750 35 0 58435 0.261 + 2896 DYSPYFKTI 9 112 567.2791460627044 1132.5437391922087 2 567.279296875 MULTI HCD FTMS 0 0 0 15219 282289.65625 0.011449060288913002 111 -2.8994674682617188 6 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 74.19965305603844 0.007729275404663812 1 {[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F} 9 4 + 45.089 0 0 3.9812 3.9812 81.132 0 0 0 1.9436280827964367 13.318102842779354 1.9436280827964367 2.8329430290755084 0 2.1721675119240516 1.5228787452803376 0.5796896906561032 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YE][{I|L}A]EK{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K]{I|L}GTD 3.9812;3.7311;2.3719;2.1217;0.32818;0.31601 -;+;-;-;-;- + 1762 NaN NaN 229241.3 NaN 12028 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15226 66.116 NaN 243110 35 0 17220 0.261 + 33953 YLSKGKQVQL 10 65 582.3453172786801 NaN 0 582.345458984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YLSKGKQVQL_ REV__ENSG00000160785|ENST00000359511|SLC25A44 14.838274106304384 0.3224471714378502 1 QVQ{M(Oxidation (M))|F} 4 -1 17.423 0 0 1.4985 0 0 131.23888457248364 526.1961763971311 657.4350609696148 0 0 0 0 0 0 0 0 0 QVQ{M(Oxidation (M))|F} 1.4985 - 33 + NaN NaN 132817.8 NaN 12029 3195 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15228 66.121 NaN 5109600 35 0 299250 0.327 + 27177 SYNNFFRMF 9 130 621.2738121112648 1240.5330712893294 2 621.2742919921875 MULTI HCD FTMS 0 0 0 15227 3620181.5 0.7162338631648412 -2 0.05889129638671875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 193.2943466776899 1.661812519250559E-13 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 114.47 0 0 9.2274 0 0 0 208.0365389459594 208.0365389459594 77.04952202706862 0 0 0 0 2.504432191740108 2 1.374803706770636 1.079689690656103 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.2274 - 14847 + NaN NaN 686605.6 NaN 12030 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15229 66.125 NaN 841400 35 0 300950 0.261 + -1 SMLFCCSIE 9 83 574.227266486537 1146.439980039874 2 574.2276611328125 MULTI HCD FTMS 0 0 0 15227 382247.21875 0.24722894197208314 6 -0.1695556640625 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))SM(Oxidation (M))LFCC(Carbamidomethyl (C))SIE_ REV__ENST00000549784.5_3_12:54119514-54121194:-|nuORF 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F}V[{I|L}T] 4 -1 17.792 0 0 1.5519 0 0 668.159959861525 0 668.159959861525 0 4.6040937697618745 0 0 0 0.7614393726401688 0 0 0 {M(Oxidation (M))|F}V[{I|L}T] 1.5519 - 87 NaN NaN 216279.5 NaN 12031 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15230 66.129 NaN 1008400 35 0 64724 0.261 + 16289 LQQEPNSFFD 10 108 612.7810412971864 1223.5475296611728 2 612.78125 MULTI HCD FTMS 0 0 0 15227 289489.8125 0.8368243494103089 4 -0.11721038818359375 3 Unmodified _LQQEPNSFFD_ ENSG00000005889|ENST00000304543|ZFX;ENST00000480195.1_1_X:24190859-24190928:+|nuORF;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant 13.90604991867851 0.3810395177745597 1 VYK{I|L}E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 7 32.375 0 0 2.646 0 0 163.9843715574603 0 163.9843715574603 0 0.9830400056608752 0 0 0 0 0 0.9802046884880937 0 VYK{I|L}E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.646 - 1276 + NaN NaN 231434.6 NaN 12032 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15231 66.132 NaN 322520 35 0 43628 0.261 + 27522 TAAENEFVAL 10 65 532.7665985022375 1063.5186440712748 2 532.7669677734375 MULTI HCD FTMS 0 0 0 15227 166861.625 0.6806733010438019 3 -0.091064453125 4 Unmodified _TAAENEFVAL_ CON__O95678;ENSG00000170454|ENST00000252245|KRT75 49.55428908609986 0.07941048486997417 1 {M(Oxidation (M))|F}VA{I|L} 4 6 43.928 0 0 4.1304 0 0 615.2492133924289 0 615.2492133924289 0 29.323806533759438 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}VA{I|L} 4.1304 + + 52 NaN NaN 135309.3 NaN 12033 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15232 66.135 NaN 481950 35 0 55164 0.261 + 16181 LPVHVFEAL 9 68 512.7947045619219 1023.5748561906438 2 512.7951049804688 MULTI HCD FTMS 0 0 0 15227 229735.828125 0.6973739292226144 -2 0.05889129638671875 5 Unmodified _LPVHVFEAL_ ENSG00000100982|ENST00000372409|PCIF1 81.61307344734483 0.005330412723537057 1 {I|L}PVHV{M(Oxidation (M))|F}EA{I|L} 9 0 + 72.321 0 0 7.0655 7.0655 94.368 0 0 0 50.89403206983519 11.39506772603255 11.39506772603255 40.6724224828298 0 2.3494850021680094 1.0457574905606752 1.1747425010840047 0 + + {I|L}PVHV{M(Oxidation (M))|F}EA{I|L};[{I|L}A]E{M(Oxidation (M))|F}[YR]{I|L}{I|L};[{M(Oxidation (M))|F}E]A{I|L}[YR]{I|L}{I|L};[{M(Oxidation (M))|F}V][DV][YR]{I|L}{I|L} 7.0655;3.0919;2.1923;0.55987 +;-;-;- + 267 + NaN NaN 154611.7 NaN 12034 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15233 66.141 NaN 972800 35 0 52599 0.261 + -1 PDMIRMVVQ 9 100 552.7814708769943 1103.5483888207884 2 553.795654296875 MULTI HCD FTMS 0 0 0 15227 8598.6806640625 0.2310219114077224 -3 0.08841705322265625 6 Oxidation (M) _PDM(Oxidation (M))IRMVVQ_ REV__ENSG00000177613|ENST00000331173|CSTF2T 21.536976647645854 0.1742816388551942 1 [YN]DEA{I|L}R{I|L} 8 -1 40.531 0 0 3.6728 0 0 0 126.04276690704627 126.04276690704627 7.31862067087804 0 0 0 0 0 2 0.2614393726401688 0.8609243748081782 [YN]DEA{I|L}R{I|L} 3.6728 - 1164 NaN NaN 228206.4 NaN 12035 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15234 66.145 NaN 305160 35 0 36985 0.261 + 34380 YPEHISNIISL 11 75 643.3429158803186 1284.6712788274372 2 643.3432006835938 MULTI HCD FTMS 0 0 0 15227 99021.0078125 0.10348566394046761 13 -0.352386474609375 7 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 17.44264345198275 0.3051040874848456 1 {I|L}S{I|L} 3 8 39.45 0 0 3.0709 0 0 953.4615184381443 0 953.4615184381443 0 31.65878117603789 0 0 0 1 0 0.3252574989159953 0 + {I|L}S{I|L} 3.0709 + + 27 NaN NaN 132537.6 NaN 12036 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15235 66.148 NaN 153270 35 0 11793 0.261 -1 MPMQDIKMIL 10 50 618.3135229063906 NaN 0 618.3135986328125 PEAK HCD FTMS 0 0 0 15227 63948.3359375 0.7320822072008619 8 -0.2285308837890625 8 Oxidation (M) _MPMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 28.233623360808718 0.21393903686512575 1 {I|L}{M(Oxidation (M))|F}K{I|L} 4 -1 27.652 0 0 2.2397 0 0 131.09930928288082 599.1955660455686 730.2948753284495 0 0 0 0 0 0.9604093769761876 0 0 0 {I|L}{M(Oxidation (M))|F}K{I|L} 2.2397 - 22 + NaN NaN 108815.4 NaN 12037 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15236 66.151 NaN 384870 35 0 58610 0.263 + 27545 TAAHGPHWS 9 62 482.2244184827376 962.4342840322752 2 482.22491455078125 MULTI HCD FTMS 0 0 0 15227 70317.015625 0.27642331204498655 6 -0.1695556640625 9 Unmodified _TAAHGPHWS_ ENST00000592688.1_1_18:47376025-47376169:-|nuORF 34.10243960390752 0.09241788333544565 1 TAAEH 5 5 72.396 0 0 7.5222 0 0 0 450.18760095767817 450.18760095767817 43.667053245199625 0 0 0 0 1.4247425010840047 1.6989700043360187 1.274227503252014 0 TAAEH 7.5222 - 186 + NaN NaN 129863.7 NaN 12038 3196 15227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15238 66.156 NaN 1219900 35 0 139630 0.327 + 5170 FFDAELSQM 9 97 552.2390895993532 1102.4636262655063 2 552.2393798828125 MULTI HCD FTMS 0 0 0 15237 396710.625 0.11539308990755638 37 -0.9562835693359375 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D + + 82.643 7.0685 1.7275 7.4962 7.4962 66.001 0 0 0 0 56.49649864804614 0 0 0 2.586696871556164 0 1.2134679910804405 0.6505149978319906 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 7.4962 + + 1712 + NaN NaN 267789.5 NaN 12039 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15239 66.161 NaN 972140 35 0 52666 0.261 + 17765 MEGPLPFWK 9 102 552.7814708769943 1103.5483888207884 2 553.7955932617188 MULTI HCD FTMS 0 0 0 15237 13085.138671875 0.3515601829064153 -2 0.061553955078125 2 Unmodified _MEGPLPFWK_ REV__ENST00000428670.7_1_12:90049866-90102507:-|nuORF 11.640296217721598 0.25978676193971967 1 [YN]DEA{I|L}R{I|L} 8 -1 56.411 0 0 5.1118 0 0 0 126.04325967400918 126.04325967400918 27.684713732044077 0 0 0 0 0 2 0.25 1.133803120088516 [YN]DEA{I|L}R{I|L} 5.1118 - 833 NaN NaN 223197.6 NaN 12040 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15240 66.164 NaN 369750 35 0 38170 0.261 + 22294 QPELPEVIAM 10 84 571.7913629343119 1141.5681729354237 2 571.7913818359375 MULTI HCD FTMS 0 0 0 15237 148158.078125 0.9512162115257251 -1 0.0354156494140625 3 Oxidation (M) _QPELPEVIAM(Oxidation (M))_ CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;TMX2-CTNND1|1|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion 85.64151623876279 0.0013369395341731622 1 Q[RD]V{I|L}A{M(Oxidation (M))|F} 7 5 56.264 0 0 4.9287 0 0 294.15742690254064 0 294.15742690254064 0 25.081881825019828 0 0 0 2.0994850021680094 0 1.079689690656103 0.7059771852360797 Q[RD]V{I|L}A{M(Oxidation (M))|F} 4.9287 - 1043 NaN NaN 131616.3 NaN 12041 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15241 66.168 NaN 299600 35 0 74198 0.262 -1 0 46 456.5784833434032 1366.7136206304097 3 456.57867431640625 MULTI HCD FTMS 0 0 0 15237 68629.34375 0.025284047604683838 34 -0.86456298828125 4 NaN NaN 1 {I|L}W 2 -1 25.969 0 0 1.9001 0 0 1049.542315349384 0 1049.542315349384 0 16.232492903979008 0 0 0 0.5 0 0 0 {I|L}W 1.9001 - 30 NaN NaN 129937.4 NaN 12042 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15242 66.171 NaN 407180 35 0 130210 0.261 + 9267 HPLYVDVVL 9 44 527.8000353886083 1053.5855178440165 2 527.8005981445312 MULTI HCD FTMS 0 0 0 15237 116064.078125 0.2903864017822008 -3 0.09430694580078125 5 Unmodified _HPLYVDVVL_ ENSG00000177663|ENST00000319363|IL17RA;nc|ENSG00000177663|Q96F46-2|IL17RA 12.531546534597751 0.2520865569484384 1 {M(Oxidation (M))|F}T[DV]V{I|L} 6 5 27.88 0 0 2.6462 0 0 361.20054824043126 0 361.20054824043126 0 9.921525057367404 0 0 0 0.5 0 0.3494850021680094 0 {M(Oxidation (M))|F}T[DV]V{I|L} 2.6462 - 46 NaN NaN 137968.6 NaN 12043 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15243 66.174 NaN 339320 35 0 33373 0.261 + 32823 WVDEMQVQL 9 68 582.2730897490377 1162.5316265648753 2 582.2742309570312 MULTI HCD FTMS 0 0 0 15237 126927.1796875 0.3593436367117331 -9 0.26080322265625 6 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 49.55428908609986 0.03219431099695407 1 E{M(Oxidation (M))|F}QVQ{I|L} 6 3 64.39 0 0 5.5388 0 0 400.17524916816564 0 400.17524916816564 0 56.598630062565064 0 0 0 1.805462187404089 0 0.6694451763165201 0 + E{M(Oxidation (M))|F}QVQ{I|L} 5.5388 + + 167 NaN NaN 144104.2 NaN 12044 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15244 66.177 NaN 191960 35 0 52531 0.261 + 5106 FEKDHEVL 8 48 508.7557723206498 1015.4969917080996 2 508.75628662109375 MULTI HCD FTMS 0 0 0 15237 66291.2734375 0.8818341163745262 2 -0.0556488037109375 7 Unmodified _FEKDHEVL_ REV__ENSG00000101144|ENST00000395863|BMP7 6.723162845929126 0.5320176132289695 1 V{I|L} 2 -1 25.969 0 0 2.5573 0 0 785.3352713933019 0 785.3352713933019 0 15.511525224473813 0 0 0 0.5 0 0 0 V{I|L} 2.5573 + + 36 NaN NaN 110375.1 NaN 12045 3197 15237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15246 66.182 NaN 1621500 35 0 252530 0.327 + 8938 HPDPTRLLLF 10 100 604.8427034737233 1207.6708540142465 2 604.8432006835938 MULTI HCD FTMS 0 0 0 15245 400833.625 0.9417433300979285 1 -0.02950286865234375 1 Unmodified _HPDPTRLLLF_ ENSG00000183751|ENST00000568546|TBL3 32.89776655970281 0.20703914202719614 1 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 8 43.995 0 0 3.6429 0 0 165.22733249737286 0 165.22733249737286 0 8.549340831250731 0 0 0 0.2302046884880938 0 0.6989700043360187 0.6109243748081782 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.6429 - 960 + NaN NaN 329649.1 NaN 12046 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15247 66.187 NaN 1195800 35 0 54886 0.262 + 5938 FPDPNVKYVF 10 116 613.3165422889869 1224.6185316447736 2 613.31640625 MULTI HCD FTMS 0 0 0 15245 441630.75 0.33639198820501076 -16 0.4604034423828125 2 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 64.69154705217129 0.02435962300912059 1 VYK{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 9 50.954 0 0 4.1608 0 0 165.07939900933735 0 165.07939900933735 0 2.8540348485050515 0 0 0 0.8252574989159953 0 1.297106248532352 0 VYK{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1608 - 2985 + NaN NaN 267886.6 NaN 12047 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15248 66.19 NaN 844720 35 0 138300 0.261 + 34310 YPDTDVILM 9 76 541.7574008348665 1081.500248736533 2 541.7578125 MULTI HCD FTMS 0 0 0 15245 501548.1875 0.740420530265103 -9 0.2575836181640625 3 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 70.71552829651908 0.008856681705782516 1 DV{I|L}{I|L}{M(Oxidation (M))|F} 5 4 65.049 0 0 6.0147 0 0 476.193162986525 0 476.193162986525 0 36.84492427513774 0 0 0 2 0 1.1861818737241734 0 + DV{I|L}{I|L}{M(Oxidation (M))|F} 6.0147 + + 463 NaN NaN 210155.4 NaN 12048 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15249 66.194 NaN 516920 35 0 49748 0.261 + 34472 YPFESAEAQL 10 79 577.7717863530306 1153.5290197728611 2 577.7720947265625 MULTI HCD FTMS 0 0 0 15245 250527.9375 0.9151332531311224 -2 0.06156158447265625 4 Unmodified _YPFESAEAQL_ ENSG00000167325|ENST00000300738|RRM1 74.19965305603844 0.012609120674105788 1 [Y{M(Oxidation (M))|F}]PESAEAQ{I|L} 10 2 + 78.949 0 0 6.8441 6.8441 90.777 0 0 0 2.7545373444029053 57.86671262054874 2.7545373444029053 11.065374126544242 0 1.7312958898387063 0 1.079689690656103 0.3494850021680094 [Y{M(Oxidation (M))|F}]PESAEAQ{I|L};[Y{M(Oxidation (M))|F}]PSEAEAQ{I|L};[Y{M(Oxidation (M))|F}]PESAEA[AG]{I|L};[Y{M(Oxidation (M))|F}]PSEAEA[AG]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[MT][RD]Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AEA[MT]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 6.8441;5.8849;5.7467;4.7874;3.9021;3.1027 -;-;-;-;-;- 653 NaN NaN 162544.7 NaN 12049 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15250 66.197 NaN 439540 35 0 77025 0.261 + 35798 YYPEHFTLL 9 73 591.7951359275047 1181.5757189218093 2 591.7949829101562 MULTI HCD FTMS 0 0 0 15245 225973.453125 0.9104537455433581 2 -0.0556488037109375 5 Unmodified _YYPEHFTLL_ ENSG00000100065|ENST00000251973|CARD10 42.09456458481378 0.05572955244001856 1 T{I|L}{I|L} 3 6 25.199 0 0 2.1327 0 0 836.3514881818375 0 836.3514881818375 0 7.145274469708763 0 0 0 0.5 0 0.4247425010840047 0 + T{I|L}{I|L} 2.1327 + + 96 NaN NaN 151802.3 NaN 12050 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15251 66.2 NaN 270290 35 0 30095 0.261 + 9814 HYNWLIYHL 9 67 629.8219077281749 1257.6292625231497 2 629.8221435546875 MULTI HCD FTMS 0 0 0 15245 102254.9765625 0.08920631210809883 35 -0.8973388671875 6 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 85.64151623876279 0.004640175941193596 1 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 87.985 0 0 6.9961 6.9961 88.201 0 0 0 7.467692197839909 7.467692197839909 7.467692197839909 7.467692197839909 0 2.473197507588033 1.5228787452803376 0 0.6139829889124311 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}NW{I|L}YH{I|L};HYN{I|L}W{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};HYGG{I|L}W{I|L}YH{I|L};[H{I|L}]YNW{I|L}YH{I|L};{I|L}[YG]{[HG]|PP}W{I|L}YH{I|L} 6.9961;6.4023;6.314;6.1447;5.6701;5.4126;4.2866;2.6925 +;+;-;-;-;-;-;- + 303 NaN NaN 123374.5 NaN 12051 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15252 66.204 NaN 260780 35 0 18890 0.262 + 25129 SAHLFEVEL 9 63 522.7712047864098 1043.5278566396196 2 522.771728515625 MULTI HCD FTMS 0 0 0 15245 67835.1015625 0.460060014649195 3 -0.07851409912109375 7 Unmodified _SAHLFEVEL_ ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF 20.453626601364224 0.18364154288633264 1 EVE{I|L} 4 5 30.662 0 0 2.9383 0 0 555.2808094709 0 555.2808094709 0 21.370090806403468 0 0 0 0.2742275032520141 0 0.4247425010840047 0 + EVE{I|L} 2.9383 + + 71 NaN NaN 117703.4 NaN 12052 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15253 66.207 NaN 287120 35 0 65775 0.262 + 8828 HKRSHQRLF 9 49 403.56392094914355 1207.6699334476307 3 403.89892578125 MULTI HCD FTMS 0 0 0 15245 28781.48828125 0.6020756566190267 -2 0.06156158447265625 8 Unmodified _HKRSHQRLF_ ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 10.150570793230772 0.27265765907388223 1 {I|L}{M(Oxidation (M))|F} 2 7 30.969 0 0 2.5644 0 0 929.5067728981658 0 929.5067728981658 0 27.78151250383644 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.5644 + + 10 + NaN NaN 128328.6 NaN 12053 3198 15245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15255 66.212 NaN 4742300 35 0 818360 0.327 + 27532 TAAENEFVTL 10 92 547.7716926644357 1093.5288323956713 2 547.7723388671875 MULTI HCD FTMS 0 0 0 15254 3182472.25 0.11516793784951919 11 -0.27750396728515625 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 200.32105748857333 3.4553563873582277E-23 1 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 107.59 0 0 9.8387 9.8387 90.267 0 0 0 3.1259189508755014 16.53212513775344 3.1259189508755014 3.1259189508755014 0 2.8723637474483468 0 1.9447638809191468 1.4291746928241125 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};[TP]{[CA]|SS}NE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};[TP]{[CA]|SS}GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L} 9.8387;9.5528;8.7108;8.4314;7.9951;7.9454;7.6937;6.2864;5.8501;5.8004 +;-;-;-;-;-;-;-;-;- + 2193 NaN NaN 411956.6 NaN 12054 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15256 66.216 NaN 1006300 35 0 71902 0.261 + 1208 AYLLNLNHL 9 87 535.8033386786182 1069.5921244240362 2 535.8035888671875 MULTI HCD FTMS 0 0 0 15254 349933.9375 0.4186469602249934 5 -0.1374664306640625 2 Unmodified _AYLLNLNHL_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 179.22989800431262 1.129651853483991E-12 1 AY{I|L}{I|L}N{I|L}NH{I|L} 9 0 + 94.827 0 0 8.8657 8.8657 92.781 0 0 0 81.72827712722109 5.3915663740786925 5.3915663740786925 9.208187539523749 0 2.673877368056628 1.6989700043360187 0 1.329689690656103 + + AY{I|L}{I|L}N{I|L}NH{I|L};AY{I|L}{I|L}GG{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}NH{I|L};AY{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}GGH{I|L};AY{I|L}{I|L}N[HN]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG{I|L}NH{I|L};AY{I|L}{I|L}GG{I|L}GGH{I|L};AY{I|L}{I|L}GG[HN]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG{I|L}GGH{I|L} 8.8657;8.0048;7.9587;7.6781;7.0978;6.4612;6.2744;5.9048;5.6003;4.862 +;-;+;-;-;-;-;-;-;- + 625 + NaN NaN 238454.4 NaN 12055 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15257 66.22 NaN 747940 35 0 76404 0.261 -1 0 93 503.3062114231276 502.2989349565276 1 503.306396484375 MULTI HCD FTMS 0 0 0 15254 382242.1875 0.005948637758232959 115 -3.0177764892578125 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 2.9075 0 0 337.21999926492447 0 337.21999926492447 0 12.385606273598311 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.9075 - 19 + NaN NaN 199481.1 NaN 12056 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15258 66.223 NaN 535860 35 0 112690 0.261 + 20118 NYIPYLTKL 9 74 562.820955992304 1123.627359051408 2 562.8215942382812 MULTI HCD FTMS 0 0 0 15254 257363.40625 0.1803264090069523 8 -0.212615966796875 4 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 59.368380827593164 0.01846506874148156 1 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L} 9 4 + 64.287 0 0 5.7214 5.7214 86.593 0 0 0 12.597499264297696 12.597499264297696 12.597499264297696 9.06295947543775 0 1.3807196863200843 1.6989700043360187 0 1.0356668758921828 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[YN]{I|L}[{I|L}V]{I|L}[YN]{I|L};[YN]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}TK{I|L} 5.7214;4.9148;4.6003 -;-;+ + 134 NaN NaN 163208.4 NaN 12057 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15259 66.226 NaN 328490 35 0 50973 0.263 + 21559 PYLWWKKYI 9 55 432.9090277956166 1295.70525398705 3 433.2436828613281 MULTI HCD FTMS 0 0 0 15254 33021.671875 0.3735156443997494 1 -0.02614593505859375 5 Unmodified _PYLWWKKYI_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 20.41453444215458 0.18397929046831515 1 PY{I|L} 3 6 40.463 0 0 3.1228 0 0 0 919.4919527643186 919.4919527643186 26.483259264971153 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 + PY{I|L} 3.1228 + + 12 + NaN NaN 123007.4 NaN 12058 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15260 66.23 NaN 272520 35 0 21038 0.261 -1 TADPLSNMVL 10 62 538.7666763056175 1075.5187996780348 2 538.7666015625 MULTI HCD FTMS 0 0 0 15254 41685.32421875 0.19082394685146942 11 -0.27750396728515625 6 Oxidation (M) _TADPLSNM(Oxidation (M))VL_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 13.614867670302875 0.3837631382804675 1 T{I|L} 2 -1 19.464 0 0 1.8097 0 0 843.3748646466812 0 843.3748646466812 0 2.2751384117839066 0 0 0 0 0 0 0 T{I|L} 1.8097 - 74 NaN NaN 120071.4 NaN 12059 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15261 66.233 NaN 197570 35 0 25783 0.261 + 16945 LYHLQPIF 8 60 515.7891372240556 1029.563721514911 2 515.7892456054688 MULTI HCD FTMS 0 0 0 15254 25451.359375 0.32676488347787014 -4 0.1172027587890625 7 Unmodified _LYHLQPIF_ REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 40.44857923139169 0.22516712537107883 1 {I|L}YV 3 -1 47.664 0 0 4.6295 0 0 0 651.3258933346666 651.3258933346666 18.640078085766092 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 {I|L}YV 4.6295 - 32 + NaN NaN 123296.3 NaN 12060 3199 15254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15263 66.238 NaN 2703300 35 0 669590 0.327 + 20338 NYRDTFFNL 9 91 595.2862667274787 1188.5579805217574 2 595.3017578125 MULTI HCD FTMS 0 0 0 15262 139088.65625 0.5034960375526096 5 -0.14415740966796875 1 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 40.23920728925047 0.06424668180817725 1 [YV]P{I|L}MKEY{M(Oxidation (M))|F} 9 8 + 68.567 0 0 5.7689 5.7689 86.021 0 0 0 16.989700043360187 16.478174818886373 16.478174818886373 7.447274948966935 0 0 1.6989700043360187 0.3494850021680094 0 [YV]P{I|L}MKEY{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]MKEY{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV]P{I|L}M[YE]K{M(Oxidation (M))|F};[{I|L}P]MKYEVY{M(Oxidation (M))|F};[{I|L}P][YV]M{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]MKYVEY{M(Oxidation (M))|F};[{I|L}P][YV]M[EP]PP{M(Oxidation (M))|F} 5.7689;5.1423;5.1219;4.3395;4.0885;3.8973;3.8478;3.7129;3.6997;3.6925 -;-;-;-;-;-;-;-;-;- 1125 NaN NaN 493594.2 NaN 12061 3200 15262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15264 66.242 NaN 1344500 35 0 108400 0.261 + 1455 AYSPRFLYI 9 101 565.3054826581144 1128.5964123830288 2 565.3057250976562 MULTI HCD FTMS 0 0 0 15262 818001.8125 0.6901792373789447 3 -0.07854461669921875 2 Unmodified _AYSPRFLYI_ ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 69.10491478415734 0.009377850133389008 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[RP]{M(Oxidation (M))|F}{I|L}Y{I|L} 9 0 + 72.36 0 0 6.4115 6.4115 89.99 0 0 0 25.642492736872597 54.84900271269879 25.642492736872597 11.237125054200234 0 1.774227503252014 2 1.1307196863200843 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[RP]{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[RP]{M(Oxidation (M))|F}{I|L}{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}A[RP]{M(Oxidation (M))|F}{I|L}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[RP]{M(Oxidation (M))|F}{I|L}{I|L}Y 6.4115;5.4159;3.7736;2.778 +;-;-;- + 270 NaN NaN 287306.3 NaN 12062 3200 15262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15265 66.246 NaN 453820 35 0 63004 0.261 + 28104 TIAFFHYAF 9 98 558.7780103575091 NaN 0 558.7631225585938 PEAK HCD FTMS 0 0 0 15262 10632.2734375 1 0 0 3 Unmodified _TIAFFHYAF_ REV__nc|ENSG00000273540|Q96MI9|AGBL1 12.531546534597751 0.23452071659215576 1 TV{M(Oxidation (M))|F} 3 -1 18.188 0 0 1.6304 0 0 131.12690839820726 634.2092989557249 765.3362073539322 0 0 0 0 0 0 0 0.3494850021680094 0 TV{M(Oxidation (M))|F} 1.6304 - 282 + NaN NaN 146370 NaN 12063 3200 15262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15266 66.249 NaN 158250 35 0 13879 0.261 + -1 CCHSIFPLHC 10 56 637.2687918654117 1272.5230307976233 2 637.7713012695312 MULTI HCD FTMS 0 0 0 15262 51264.86328125 0.8028717467962806 -3 0.08179473876953125 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))HSIFPLHC_ REV__ENST00000368655.4_1_1:153782348-153782624:-|nuORF 3.944395688203298 0.4544253912184634 1 NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 7 -1 34.469 0 0 2.7087 0 0 282.08475062359827 0 282.08475062359827 0 34.46858230198188 0 0 0 0.2742275032520141 0 0 0 NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 2.7087 - 74 + NaN NaN 113829.9 NaN 12064 3200 15262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15267 66.253 NaN 262730 35 0 15736 0.261 + 31802 VYMDWYEKF 9 65 648.7840025842971 NaN 0 648.7842407226562 PEAK HCD FTMS 0 0 0 15262 65946.28125 0.8100512826615202 2 -0.05234527587890625 5 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 57.24910588100465 0.030557824717750096 1 KEYWD{M(Oxidation (M))|F} 6 7 53.423 0 0 4.1235 0 0 165.07818475668165 259.1084078424438 424.18659259912545 0 0 0 0 0 2.805462187404089 0 0.3252574989159953 0 KEYWD{M(Oxidation (M))|F} 4.1235 - 136 + NaN NaN 123437.4 NaN 12065 3200 15262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15268 66.256 NaN 167040 35 0 37409 0.264 -1 TAMDVVYAL 9 54 499.7466991268183 997.4788453204367 2 499.7472839355469 MULTI HCD FTMS 0 0 0 15262 70512.6484375 0.07755421754991468 -23 0.6432723999023438 6 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 1 M{I|L}{[C(Carbamidomethyl (C))E]|[WC]}VY 6 -1 39.654 0 0 3.9754 0 0 0 199.10926233463127 199.10926233463127 13.455612550363796 0 0 0 0 1.4247425010840047 0 0 0 M{I|L}{[C(Carbamidomethyl (C))E]|[WC]}VY 3.9754 - 67 + NaN NaN 104869.1 NaN 12066 3200 15262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15270 66.261 NaN 5978800 35 0 331360 0.327 + 27178 SYNNFFRMF 9 123 621.2738121112648 1240.5330712893294 2 621.2744140625 MULTI HCD FTMS 0 0 0 15269 4455428 0.8814829887652876 3 -0.0884552001953125 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 179.17365725063826 1.1335045685127237E-12 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 117.22 0 0 9.4491 0 0 0 208.03652368717033 208.03652368717033 83.69853552431174 0 0 0 0 2.7440840204505514 2 1.4679001828205485 1.055462187404089 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.4491 - 11111 + NaN NaN 674566.8 NaN 12067 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15271 66.265 NaN 2435000 35 0 621630 0.261 + 20339 NYRDTFFNL 9 86 595.2862667274787 1188.5579805217574 2 595.3018188476562 MULTI HCD FTMS 0 0 0 15269 137389.984375 0.497346905184638 6 -0.163604736328125 2 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 40.23920728925047 0.06424668180817725 1 [YV]P{I|L}MKEY{M(Oxidation (M))|F} 9 8 + 67.317 0 0 5.6638 5.6638 85.817 0 0 0 14.49092531119419 16.140530381629645 14.49092531119419 7.447274948966935 0 0 1.6989700043360187 0.3494850021680094 0 [YV]P{I|L}MKEY{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]MKEY{M(Oxidation (M))|F};[YV]P{I|L}M[EP]P{M(Oxidation (M))|F}P;[YV]P{I|L}M{[SA]|[TG]}YV{M(Oxidation (M))|F};[{I|L}P][YV]M{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P][YV]M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}M[YE]K{M(Oxidation (M))|F};{M(Oxidation (M))|F}DP[EP]M{I|L}PM{I|L} 5.6638;5.0372;5.0168;4.4446;4.3058;4.0321;3.818;3.7976;3.7921;3.4837 -;-;-;-;-;-;-;-;-;- 1016 NaN NaN 454253.8 NaN 12068 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15272 66.269 NaN 1126800 35 0 135270 0.261 -1 0 90 604.7680411660131 1207.521529398826 2 604.7686157226562 MULTI HCD FTMS 0 0 0 15269 317815.71875 0.09972583615491508 41 -1.0645599365234375 3 NaN NaN 1 C(Carbamidomethyl (C))D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 65.635 0 0 5.4355 0 0 278.16267592597814 0 278.16267592597814 0 56.65603136123936 0 0 0 1.9247425010840047 0 0.3054621874040891 0.9634679910804405 C(Carbamidomethyl (C))D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.4355 - 1664 NaN NaN 253542.1 NaN 12069 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15273 66.272 NaN 365420 35 0 44978 0.261 -1 FPAGYMYPSM 10 74 590.2457738184258 1178.4769947036516 2 590.2459716796875 MULTI HCD FTMS 0 0 0 15269 139482.59375 0.6408383107754458 33 -0.85162353515625 4 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 39.957323273324995 0.14577711486213385 1 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE] 8 -1 + 49.569 0 0 4.2062 4.2062 83.162 0 0 0 23.10477135886331 10.048056065109215 10.048056065109215 6.775625438107582 0 1.5 0 1.120371515030528 0 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE];M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE];M[AG][Y{I|L}]{M(Oxidation (M))|F}Y[WE];[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}Y[WE];[Q{I|L}]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}Y[WE];M{[YC]|[HE]}V{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}];{[QD]|[EN]|[WG]|[KD]|[RS]}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PCM;[WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}];[WY]YM[{M(Oxidation (M))|F}E][Q{I|L}] 4.2062;3.6312;3.4202;2.2968;2.2207;2.1356;1.8347;1.628;1.0798 -;-;-;-;-;-;-;-;- 697 + NaN NaN 133842.4 NaN 12070 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15274 66.275 NaN 275570 35 0 14543 0.261 + 18538 MTQKWIQSGH 10 69 608.3011582807663 NaN 0 608.2832641601562 PEAK HCD FTMS 0 0 0 15269 24163.263671875 0.7136523931853981 -2 0.04901123046875 5 Unmodified _MTQKWIQSGH_ CON__P20930;ENSG00000143631|ENST00000368799|FLG;FLG|p.Q3155Sfs*61|1|0.08|ENSG00000143631|chr1:152305423-152305423|G/-|frameshift_variant;FLG|p.S2719Rfs*26|1|0.08|ENSG00000143631|chr1:152306729-152306730|-/ACACC|frameshift_variant;FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant 6.723162845929126 0.3344301934401713 1 DN{M(Oxidation (M))|F}[QA]VDG 8 9 32.561 0 0 2.6808 0 0 164.12644643997606 201.0668123834594 365.1932588234355 0 0 0 0 0 0 0 1.1549471895720984 1.4916440611282624 DN{M(Oxidation (M))|F}[QA]VDG 2.6808 - 223 + NaN NaN 121784.3 NaN 12071 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15275 66.279 NaN 164070 35 0 12395 0.263 + -1 PMAEELNL 8 51 466.72297268479525 931.4313924363905 2 466.7232360839844 MULTI HCD FTMS 0 0 0 15269 50939.46484375 0.383248878805156 10 -0.26459503173828125 6 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.50814828952472 1 {I|L}N{I|L} 3 -1 30.005 0 0 3.2214 0 0 573.2102165174283 0 573.2102165174283 0 24.943415770716157 0 0 0 0.3807196863200844 0 0 0 {I|L}N{I|L} 3.2214 + + 27 NaN NaN 99099.5 NaN 12072 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15276 66.282 NaN 220900 35 0 15294 0.261 -1 IYNPSMGVSVL 11 72 598.3052850350152 NaN 0 598.3048706054688 PEAK HCD FTMS 0 0 0 15269 82692 1 0 0 7 Oxidation (M) _IYNPSM(Oxidation (M))GVSVL_ ENSG00000110400|ENST00000264025|NECTIN1;ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-2|NECTIN1;nc|ENSG00000110400|Q15223-3|NECTIN1 24.881564428377168 0.21858972073100275 1 VSR 3 -1 20.005 0 0 1.6746 0 0 131.0903635798216 718.2872448652151 849.3776084450367 0 0 0 0 0 0.8807196863200843 0 0.5 0 VSR 1.6746 - 36 + NaN NaN 117286.3 NaN 12073 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15277 66.285 NaN 150730 35 0 13160 0.261 -1 IYQFIMDRF 9 55 624.8075114680809 1247.6004700029616 2 624.8074340820312 MULTI HCD FTMS 0 0 0 15269 60860.390625 0.22668809391143982 39 -1.0155410766601562 8 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 20.580933911654288 0.18254163597178805 1 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 -1 + 54.587 0 0 4.3754 4.3754 85.257 0 0 0 18.40166223149673 11.39506772603255 11.39506772603255 9.208187539523749 0 1.3494850021680094 2 0 0 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[YV]AA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[Y{I|L}]MDR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][AG][Y{I|L}]MDR{M(Oxidation (M))|F};[YV]AA[Y{I|L}]MDR{M(Oxidation (M))|F} 4.3754;3.6373;3.354;3.3335;3.1567;2.5955;2.3122 +;-;-;-;-;-;- + 103 + NaN NaN 111559.4 NaN 12074 3201 15269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15279 66.29 NaN 856780 35 0 452670 0.327 -1 0 70 427.3023667931273 852.5901806530546 2 427.3026123046875 MULTI HCD FTMS 0 0 0 15278 464360.71875 0.5931890304079006 -6 0.1695556640625 1 NaN NaN 1 {I|L} 1 -1 3.9794 0 0 0.46674 0 0 486.32714698511376 250.16181360416252 736.4889605892763 0 0 0 0 0 0 0 0 0 {I|L} 0.46674 - 10 + NaN NaN 204870.8 NaN 12075 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15280 66.295 NaN 776190 35 0 54358 0.261 + 34336 YPEEFEKLL 9 91 584.3000920349472 1166.5856311366942 2 584.30029296875 MULTI HCD FTMS 0 0 0 15278 448683.1875 0.6292667880157842 -4 0.10799407958984375 2 Unmodified _YPEEFEKLL_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 128.93241758739586 0.0006697181619526092 1 YPEE{M(Oxidation (M))|F}EK{I|L}{I|L} 9 0 + 104.77 0 0 8.9811 8.9811 90.985 0 0 0 6.482762871687584 6.482762871687584 6.482762871687584 6.482762871687584 0 3.079689690656103 1.5228787452803376 1.1914339689053026 0 + + YPEE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}E{I|L}K{I|L};[EP]YE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]Y{I|L}{I|L};YP{M(Oxidation (M))|F}EEEK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}E{I|L}{I|L}Q;[EP]EY{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]{I|L}Y{I|L};[EP]YE{M(Oxidation (M))|F}E{I|L}K{I|L} 8.9811;8.4254;6.9046;6.4148;6.1311;6.1253;6.0183;5.5452;5.3799;4.894 +;+;-;-;-;-;-;-;-;- + 1175 + NaN NaN 199627.5 NaN 12076 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15281 66.298 NaN 664300 35 0 35271 0.261 + 29087 TYGEIFEKF 9 96 567.2791460627044 1132.5437391922087 2 567.2794189453125 MULTI HCD FTMS 0 0 0 15278 273840.84375 0.011106394656146936 118 -3.1087112426757812 3 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 72.96794272382148 0.008127836904478181 1 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 5 46.442 0 0 4.1007 0 0 0 357.2132861221838 357.2132861221838 11.765748839999816 0 0 0 0 1.774227503252014 1.6989700043360187 0.6382104921644451 0 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1007 - 1278 NaN NaN 177434.6 NaN 12077 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15282 66.302 NaN 306300 35 0 34472 0.261 + 16182 LPVHVFEAL 9 62 512.7947045619219 1023.5748561906438 2 512.794921875 MULTI HCD FTMS 0 0 0 15278 170340.953125 0.5170779880431696 4 -0.10466766357421875 4 Unmodified _LPVHVFEAL_ ENSG00000100982|ENST00000372409|PCIF1 57.47134341890925 0.0211188941628804 1 {M(Oxidation (M))|F}EA{I|L} 4 5 45.433 0 0 4.4387 0 0 545.3334279438875 0 545.3334279438875 0 29.235162698957282 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}EA{I|L} 4.4387 + + 107 NaN NaN 120103.8 NaN 12078 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15283 66.305 NaN 388770 35 0 100140 0.261 + -1 IECWDSHSN 9 68 574.227266486537 1146.439980039874 2 574.2277221679688 MULTI HCD FTMS 0 0 0 15278 110145.484375 0.07123963296340888 12 -0.300262451171875 5 Carbamidomethyl (C) _IEC(Carbamidomethyl (C))WDSHSN_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|2 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F}EN 3 -1 15.662 0 0 1.3661 0 0 738.3043914373153 0 738.3043914373153 0 7.461987796517704 0 0 0 0 0 0 0 {M(Oxidation (M))|F}EN 1.3661 - 107 NaN NaN 143246.1 NaN 12079 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15284 66.308 NaN 210170 35 0 16870 0.261 + 20629 PFCDSRREMD 10 68 628.262899547263 1254.511246161326 2 628.263916015625 MULTI HCD FTMS 0 0 0 15278 90601.71875 0.5843957876005911 2 -0.0589752197265625 6 Unmodified _PFCDSRREMD_ ENSG00000102595|ENST00000376747|UGGT2;ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1 5.296884461304476 0.4472664531305844 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 8 22.831 0 0 1.8199 0 0 942.4020252912125 0 942.4020252912125 0 1.6330312844383599 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8199 - 254 NaN NaN 114515.4 NaN 12080 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15285 66.312 NaN 137380 35 0 12054 0.264 + -1 CSIKCIDCYHL 11 53 471.2092372007327 1410.605882202398 3 471.20928955078125 MULTI HCD FTMS 0 0 0 15278 37690.98828125 0.9790878359798121 1 -0.0261993408203125 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))SIKC(Carbamidomethyl (C))IDCYHL_ REV__ENSG00000105278|ENST00000262961|ZFR2;REV__nc|ENSG00000105278|Q9UPR6-3|ZFR2 2.6312355333042263 0.4073809613003177 1 [YN]AWVH 6 -1 64.654 0 0 4.5834 0 0 0 637.2480562799436 637.2480562799436 57.663800089887545 0 0 0 0 1.774227503252014 2 0 0 [YN]AWVH 4.5834 - 195 + NaN NaN 104664.9 NaN 12081 3202 15278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15287 66.317 NaN 986940 35 0 119740 0.327 + 5171 FFDAELSQM 9 97 552.2390895993532 1102.4636262655063 2 552.2393188476562 MULTI HCD FTMS 0 0 0 15286 340049.8125 0.09891189223091816 43 -1.1004257202148438 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 142.0795815696625 1.719916958814042E-05 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D + + 82.648 2.6761 0.65403 7.4966 7.4966 66.004 0 0 0 0 62.47043502756969 0 0 0 2.75 0 0.9269359821608809 0.7742275032520141 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 7.4966 + + 1395 + NaN NaN 228446.9 NaN 12082 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15288 66.321 NaN 773330 35 0 255940 0.261 + 9268 HPLYVDVVL 9 54 527.8000353886083 1053.5855178440165 2 527.800537109375 MULTI HCD FTMS 0 0 0 15286 243907.875 0.6102450588657774 3 -0.07846832275390625 2 Unmodified _HPLYVDVVL_ ENSG00000177663|ENST00000319363|IL17RA;nc|ENSG00000177663|Q96F46-2|IL17RA 21.74664581756881 0.17247014374749275 1 DVV{I|L} 4 5 38.73 0 0 3.676 0 0 609.3273792951187 0 609.3273792951187 0 33.24539712336197 0 0 0 0.8252574989159953 0 0.3054621874040891 0 + DVV{I|L} 3.676 + + 48 NaN NaN 198077.4 NaN 12083 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15289 66.325 NaN 735170 35 0 73740 0.261 + -1 NYAELLCVNH 10 77 616.7903330166926 1231.566113100185 2 616.7909545898438 MULTI HCD FTMS 0 0 0 15286 209830.90625 0.30447847919584103 -3 0.07854461669921875 3 Carbamidomethyl (C) _NYAELLC(Carbamidomethyl (C))VNH_ REV__ENSG00000276023|ENST00000617516|DUSP14 39.94969957227396 0.1458432724694501 1 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L} 9 -1 + 77.915 0 0 6.3265 6.3265 93.942 0 0 0 58.45106859498259 8.384767769392738 8.384767769392738 77.91501874674324 0 2.579689690656103 1.6989700043360187 0.3807196863200844 0.5 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L} 6.3265 - 234 + NaN NaN 199622.5 NaN 12084 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15290 66.328 NaN 574610 35 0 18718 0.261 + 19880 NYDEALRLL 9 102 553.7951348966917 1105.5757168601833 2 553.7959594726562 MULTI HCD FTMS 0 0 0 15286 85786.59375 0.3031381959045213 5 -0.1174774169921875 4 Unmodified _NYDEALRLL_ ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF 59.05245873256422 0.018907022117377846 1 [YN]DEA{I|L}R{I|L}{I|L} 9 0 + 63.278 0 0 5.7235 5.7235 90.482 0 0 0 5.376466052557376 5.376466052557376 5.376466052557376 19.45554701812867 0 2.3169015600442577 2 0 0.6109243748081782 + + [YN]DEA{I|L}R{I|L}{I|L};[YN]NSN{I|L}[VG]{I|L}{I|L};[YN]GGSN{I|L}[VG]{I|L}{I|L};[YN]NSGG{I|L}[VG]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{NN|[MP]|[D{I|L}]|[EV]}N{I|L}[VG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[WT]|[RM]}{[CA]|SS}R{I|L}{I|L} 5.7235;3.9638;3.1348;3.1348;1.4997;1.2669;0.55664 +;-;-;-;-;-;- + 2115 NaN NaN 166916 NaN 12085 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15291 66.331 NaN 256050 35 0 26002 0.261 + 22295 QPELPEVIAM 10 78 571.7913629343119 1141.5681729354237 2 571.791015625 MULTI HCD FTMS 0 0 0 15286 128320.7265625 0.8238548780177067 5 -0.1174774169921875 5 Oxidation (M) _QPELPEVIAM(Oxidation (M))_ CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;TMX2-CTNND1|1|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion 58.678817012210395 0.04622659334010173 1 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 8 6 58.933 0 0 5.1625 0 0 165.04522281915212 0 165.04522281915212 0 37.01667520279372 0 0 0 0 0 1.0484550065040281 1.031234684152075 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 5.1625 - 379 + NaN NaN 134540.6 NaN 12086 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15292 66.334 NaN 119410 35 0 11714 0.261 + 27523 TAAENEFVAL 10 52 532.7665985022375 1063.5186440712748 2 532.7667846679688 MULTI HCD FTMS 0 0 0 15286 47821.53515625 0.19507686201537897 10 -0.25457763671875 6 Unmodified _TAAENEFVAL_ CON__O95678;ENSG00000170454|ENST00000252245|KRT75 11.494710602746466 0.4035943721457025 1 A{I|L} 2 8 25.969 0 0 2.4418 0 0 861.3861523306177 0 861.3861523306177 0 7.557809497117844 0 0 0 0.5 0 0 0 + A{I|L} 2.4418 + + 8 NaN NaN 104000 NaN 12087 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15293 66.338 NaN 270270 35 0 64373 0.261 + -1 GFIICWLIMAK 11 53 456.5784833434032 1366.7136206304097 3 456.5789794921875 MULTI HCD FTMS 0 0 0 15286 92684.3828125 0.03414627357910574 40 -1.025054931640625 7 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 2.843284757254958 0.4064509854383032 1 W 1 -1 21.99 0 0 1.6089 0 0 1162.623607057947 0 1162.623607057947 0 13.89075625191822 0 0 0 0.5 0 0 0 W 1.6089 + + 29 + NaN NaN 121770.2 NaN 12088 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15294 66.341 NaN 213230 35 0 92507 0.261 + 6830 FPSSLTSSL 9 59 469.7449206174264 937.4752883016528 2 469.7452392578125 MULTI HCD FTMS 0 0 0 15286 44070.96484375 0.7399816351896003 1 -0.03277587890625 8 Unmodified _FPSSLTSSL_ ENSG00000204852|ENST00000397659|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-6|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1 18.1463463914782 0.20357593197100715 1 THHTSS{I|L} 7 5 37.611 0 0 4.012 0 0 156.10145766425939 0 156.10145766425939 0 34.05487701791266 0 0 0 1.610924374808178 0 0.4247425010840047 0 THHTSS{I|L} 4.012 - 208 NaN NaN 108597 NaN 12089 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15295 66.344 NaN 145230 35 0 11748 0.261 + 17832 MHLIQESVELS 11 50 643.3270359479334 NaN 0 643.3427124023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _MHLIQESVELS_ REV__ENSG00000159753|ENST00000334583|CARMIL2;REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 4.897010918128616 0.3282287337590871 1 S{I|L} 2 -1 15.217 0 0 1.1845 0 0 131.06090539400776 950.4348010786508 1081.4957064726586 0 0 0 0 0 0 0 0.4247425010840047 0 S{I|L} 1.1845 - 3 + NaN NaN 110847.7 NaN 12090 3203 15286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15297 66.349 NaN 1615000 35 0 104080 0.327 + 5939 FPDPNVKYVF 10 115 613.3165422889869 1224.6185316447736 2 613.3165893554688 MULTI HCD FTMS 0 0 0 15296 761146.8125 0.5797687085258025 -10 0.28742218017578125 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 88.5755730146405 0.0011117422026452513 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKYV{M(Oxidation (M))|F} 10 0 + 79.674 0 0 6.506 6.506 91.278 0 0 0 13.420525082771292 43.917527312129984 13.420525082771292 15.836134377877336 0 2.309894379144197 1.2218487496163564 0.6643943297944485 0.8539171939081174 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKYV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKVY{M(Oxidation (M))|F};[NP]VDP{M(Oxidation (M))|F}KYV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PPNVKYV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNKVYV{M(Oxidation (M))|F};[DP]{[NV]|[RG]}P{M(Oxidation (M))|F}KYV{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}PE;[DP][NP]V{M(Oxidation (M))|F}KYV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[NV]|[RG]}[DP]KYV{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}WG{[TV]|[{I|L}S]}PE 6.506;5.2129;5.1152;5.0954;5.09;4.7903;4.5808;4.5027;4.3949;4.3768 +;-;-;-;-;-;-;-;-;- + 4418 NaN NaN 335041.2 NaN 12091 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15298 66.354 NaN 1482000 35 0 188580 0.261 + 34311 YPDTDVILM 9 96 541.7574008348665 1081.500248736533 2 541.7576293945312 MULTI HCD FTMS 0 0 0 15296 566478.625 0.8362753856155575 -3 0.0884552001953125 2 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 85.35673624503755 0.00464763827098139 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTDV{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 66.502 0 0 6.1491 6.1491 83.422 0 0 0 3.652792693512417 31.224144781520877 3.652792693512417 0.3778856088940046 0 2.1307196863200843 0 1.0994850021680094 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTDV{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSEV{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTDV{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSEV{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WP]{M(Oxidation (M))|F} 6.1491;6.1141;4.551;4.516;1.0788 +;-;-;-;- + 1721 NaN NaN 312989.8 NaN 12092 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15299 66.357 NaN 367170 35 0 30958 0.261 + 34473 YPFESAEAQL 10 76 577.7717863530306 1153.5290197728611 2 577.7723388671875 MULTI HCD FTMS 0 0 0 15296 139293.828125 0.5088151658659573 4 -0.0847015380859375 3 Unmodified _YPFESAEAQL_ ENSG00000167325|ENST00000300738|RRM1 45.69961567697781 0.09594615698576985 1 ESAEAQ{I|L} 7 3 54.003 0 0 4.6815 0 0 407.18394667793126 0 407.18394667793126 0 41.439710319540524 0 0 0 0.75 0 0.3807196863200844 0 + ESAEAQ{I|L} 4.6815 + + 163 NaN NaN 142056.3 NaN 12093 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15300 66.361 NaN 217520 35 0 11006 0.261 + 6333 FPFYYEIKM 9 60 627.299003034021 1252.5834531348419 2 627.2991943359375 MULTI HCD FTMS 0 0 0 15296 85545.9375 0.09951097860768601 18 -0.42324066162109375 4 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 40.23920728925047 0.06424668180817725 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F} 9 0 + 55.71 0 0 4.4476 4.4476 87.158 0 0 0 44.740918700215886 7.944539621753535 7.944539621753535 12.88364391835536 0 2.2856668758921828 0 0 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]Q{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]K{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}[YE]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[YK]Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}[YE]Q{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}[YE]K{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE][AG]{I|L}{M(Oxidation (M))|F} 4.4476;3.419;2.9802;2.9802;2.9394;2.8815;2.8407;2.5005;2.5005;2.2451 +;+;-;-;-;-;-;-;-;- + 810 + NaN NaN 115979.8 NaN 12094 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15301 66.364 NaN 460220 35 0 17924 0.261 + 19881 NYDEALRLL 9 94 553.7951348966917 1105.5757168601833 2 553.79541015625 MULTI HCD FTMS 0 0 0 15296 78587.421875 0.27769897657202425 6 -0.14003753662109375 5 Unmodified _NYDEALRLL_ ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF 55.23464941255904 0.024247875903973527 1 [YN]DEA{I|L}R{I|L}{I|L} 9 0 + 55.93 0 0 5.0589 5.0589 91.265 0 0 0 29.722346674414332 8.697114610913488 8.697114610913488 52.283059003063734 0 2.0400990676322905 2 0 0 + + [YN]DEA{I|L}R{I|L}{I|L};[YN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QP]V[KT] 5.0589;0.3299 +;- + 1451 + NaN NaN 152843 NaN 12095 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15302 66.367 NaN 281810 35 0 17584 0.261 + 15668 LPEKLTIYTTL 11 67 646.3787783227858 1290.7430037123715 2 646.3788452148438 MULTI HCD FTMS 0 0 0 15296 133911.515625 1 0 0 6 Unmodified _LPEKLTIYTTL_ ENSG00000136937|ENST00000375147|NCBP1 42.835182525472874 0.11869059338859039 1 T{I|L}YT[{I|L}T] 6 5 56.471 0 0 4.3751 0 0 580.3412225617841 0 580.3412225617841 0 37.30204688488094 0 0 0 2 0 1.1549471895720984 0 + T{I|L}YT[{I|L}T] 4.3751 + + 156 + NaN NaN 131890.4 NaN 12096 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15303 66.371 NaN 261480 35 0 21749 0.261 + 9815 HYNWLIYHL 9 67 629.8219077281749 1257.6292625231497 2 630.3242797851562 MULTI HCD FTMS 0 0 0 15296 53476.0390625 0.06314646654929643 41 -1.0314865112304688 7 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 69.10491478415734 0.009377850133389008 1 HYNW{I|L}{I|L}YH{I|L} 9 0 + 73.018 0 0 5.806 5.806 82.79 0 0 0 0.1785129374383132 0.1785129374383132 0.1785129374383132 0.1785129374383132 0 2.4247425010840047 1.5228787452803376 0 0 + + HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}YH{I|L};[YV][Q{I|L}][WH]YH{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}[WH]YH{I|L} 5.806;5.7918;5.0738;3.6874;1.5948;0.52394 +;-;-;-;-;- + 208 + NaN NaN 117492.4 NaN 12097 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15304 66.374 NaN 117070 35 0 27866 0.264 + 12304 KLQHYQNIAF 10 38 421.2287851562138 1260.6645260688415 3 421.22900390625 MULTI HCD FTMS 0 0 0 15296 17470.369140625 0.0735717674439569 15 -0.354888916015625 8 Unmodified _KLQHYQNIAF_ REV__ENSG00000153898|ENST00000370608|MCOLN2;REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF;REV__nc|ENSG00000153898|Q8IZK6-2|MCOLN2 3.944395688203298 0.4544253912184634 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7443 0 0 1095.5856056360274 0 1095.5856056360274 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7443 + + 3 + NaN NaN 117363.4 NaN 12098 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15305 66.377 NaN 157220 35 0 30652 0.261 + 16882 LYFFLFVLF 9 51 403.56392094914355 1207.6699334476307 3 403.5643310546875 MULTI HCD FTMS 0 0 0 15296 38014.65234375 0.4835825679229269 6 -0.14003753662109375 9 Unmodified _LYFFLFVLF_ ENST00000290075.10_1_8:23423911-23424199:+|nuORF 9.347437153973935 0.2795965555214564 1 {I|L}{M(Oxidation (M))|F} 2 7 30.217 0 0 2.5021 0 0 929.508210284445 0 929.508210284445 0 29.93893850167145 0 0 0 0.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.5021 + + 8 NaN NaN 107626.8 NaN 12099 3204 15296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15307 66.382 NaN 2606000 35 0 421540 0.327 + 27533 TAAENEFVTL 10 112 547.7716926644357 1093.5288323956713 2 547.772216796875 MULTI HCD FTMS 0 0 0 15306 1801912 0.06520794933131084 17 -0.39040374755859375 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 187.1423235319798 2.3722378751884736E-16 1 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 112.25 0 0 10.265 10.265 96.101 0 0 0 14.222900387074517 16.53212513775344 14.222900387074517 14.222900387074517 0 2.885151878060192 1.0969100130080565 1.6593793813122062 1.5484550065040281 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};[TA]AENE{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L};[TA]AEN{I|L}TD{M(Oxidation (M))|F}{I|L} 10.265;8.9646;8.5923;8.1226;8.0112;7.5067;6.3382;5.7786;5.2526;4.9048 +;-;-;-;-;-;-;-;-;- + 2402 NaN NaN 475103.3 NaN 12100 3205 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15308 66.387 NaN 189410 35 0 29855 0.261 + 16946 LYHLQPIF 8 54 515.7891372240556 1029.563721514911 2 515.7894897460938 MULTI HCD FTMS 0 0 0 15306 26898.412109375 0.3453433024600342 2 -0.0423126220703125 2 Unmodified _LYHLQPIF_ REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 19.438996006549623 0.45076845602799126 1 [Y{I|L}]V 3 -1 36.254 0 0 3.5213 0 0 0 651.3263152605806 651.3263152605806 19.800821617046935 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]V 3.5213 - 80 + NaN NaN 111543.3 NaN 12101 3205 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15309 66.39 NaN 192260 35 0 9773.2 0.261 + 11 AAGFDEDMVIQ 11 78 598.2683966264111 1194.5222403196221 2 598.268798828125 MULTI HCD FTMS 0 0 0 15306 17298.60546875 0.30851469007929805 5 -0.10720062255859375 3 Unmodified _AAGFDEDMVIQ_ ENSG00000131023|ENST00000543571|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;nc|ENSG00000131023|O95835-2|LATS1 11.494710602746466 0.35692862141139436 1 VQ{I|L} 3 10 17.051 0 0 1.4275 0 0 836.2921620099625 0 836.2921620099625 0 5.078971335916162 0 0 0 0.5 0 0 0 VQ{I|L} 1.4275 - 63 NaN NaN 124600.6 NaN 12102 3205 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15311 66.395 NaN 4960100 35 0 277940 0.327 + 27179 SYNNFFRMF 9 132 621.2738121112648 1240.5330712893294 2 621.2742309570312 MULTI HCD FTMS 0 0 0 15310 3417169.25 0.6760689575966295 8 -0.19559478759765625 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 193.2943466776899 1.661812519250559E-13 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 109.54 0 0 8.8298 0 0 0 208.03640161685783 208.03640161685783 69.60629610878809 0 0 0 0 2.4604093769761874 2 0.9049471895720985 1.0501648626366045 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8.8298 - 19930 + NaN NaN 624405.7 NaN 12103 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15312 66.399 NaN 1683600 35 0 408520 0.261 + 20340 NYRDTFFNL 9 80 595.2862667274787 1188.5579805217574 2 595.3018188476562 MULTI HCD FTMS 0 0 0 15310 54103.015625 0.1958510112993807 10 -0.25113677978515625 2 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 18.373094154950223 0.20161688160436167 1 [YV]P{I|L}MKEY{M(Oxidation (M))|F} 9 8 + 66.877 0 0 5.6267 5.6267 85.754 0 0 0 14.49092531119419 16.478174818886373 14.49092531119419 7.447274948966935 0 0 1.6989700043360187 0.3054621874040891 0 [YV]P{I|L}MKEY{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]MKEY{M(Oxidation (M))|F};[{I|L}P][YV]M{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}M[YE]K{M(Oxidation (M))|F};[{I|L}P][YV]M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}[C(Carbamidomethyl (C))S][HS]N{I|L};[{I|L}P][YV]M[YE]K{M(Oxidation (M))|F};[YN]{[QD]|[EN]|[WG]|[KD]|[RS]}[Q{I|L}]VY{M(Oxidation (M))|F} 5.6267;5.0002;4.7432;4.4075;3.781;3.7358;3.524;2.703;2.5166;1.4413 -;-;-;-;-;-;-;-;-;- 677 NaN NaN 332829.8 NaN 12104 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15313 66.403 NaN 762060 35 0 90643 0.261 -1 0 81 604.7680411660131 1207.521529398826 2 604.7681274414062 MULTI HCD FTMS 0 0 0 15310 237158.84375 0.07441691080454656 46 -1.1870574951171875 3 NaN NaN 1 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 53.928 0 0 4.466 0 0 666.3051244651792 0 666.3051244651792 0 42.95880017344075 0 0 0 1.5 0 0 0.6989700043360187 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.466 - 500 NaN NaN 210573.7 NaN 12105 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15314 66.406 NaN 367640 35 0 31183 0.261 + 35799 YYPEHFTLL 9 58 591.7951359275047 1181.5757189218093 2 592.2815551757812 MULTI HCD FTMS 0 0 0 15310 52728.5625 0.28941034995755277 11 -0.27056121826171875 4 Unmodified _YYPEHFTLL_ ENSG00000100065|ENST00000251973|CARD10 16.942295170755138 0.21397866736869717 1 YY[KP]{I|L} 5 5 26.082 0 0 2.2074 0 0 0 514.2075908302655 514.2075908302655 12.626656038284452 0 0 0 0 0.5 2 0 0 YY[KP]{I|L} 2.2074 - 59 NaN NaN 137302.6 NaN 12106 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15315 66.41 NaN 469740 35 0 152860 0.262 -1 TAMDVVYAL 9 37 499.7466991268183 997.4788453204367 2 499.7470397949219 MULTI HCD FTMS 0 0 0 15310 164877.265625 0.18134232099720682 -17 0.470245361328125 5 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 28.486842064014134 0.11819662193267319 1 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2153576697448 0 533.2153576697448 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 19 NaN NaN 147998.4 NaN 12107 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15316 66.413 NaN 349840 35 0 56975 0.261 + 16947 LYHLQPIF 8 68 515.7891372240556 1029.563721514911 2 516.2744140625 MULTI HCD FTMS 0 0 0 15310 18526 0.38533648904802875 3 -0.07816314697265625 6 Unmodified _LYHLQPIF_ REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 40.44857923139169 0.22516712537107883 1 {I|L}YVR[YV]A{M(Oxidation (M))|F} 8 -1 + 51.825 0 0 5.0337 5.0337 90.889 0 0 0 31.374971153266475 10.093275985023382 10.093275985023382 44.101001529553926 0 1.5484550065040281 1.5228787452803376 0 0 {I|L}YVR[YV]A{M(Oxidation (M))|F};[Q{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R[{I|L}P]{M(Oxidation (M))|F} 5.0337;0.75023 -;- 210 + NaN NaN 134542.8 NaN 12108 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15317 66.416 NaN 265090 35 0 17511 0.261 + 31775 VYLQNWSHVL 10 76 629.8338038337585 1257.6530547343168 2 629.8216552734375 MULTI HCD FTMS 0 0 0 15310 26870.693359375 0.18885199065428154 -5 0.13414764404296875 7 Unmodified _VYLQNWSHVL_ ENSG00000169727|ENST00000578552|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098|GPS1 50.13029200064056 0.07731568956748922 1 VY{I|L}QNWSVH{I|L} 10 2 + 80.914 0 0 6.4338 6.4338 87.887 0 0 0 34.54033167468005 9.131806016604358 9.131806016604358 9.164539485499247 0 2.055462187404089 1.3979400086720375 0 0.3807196863200844 VY{I|L}QNWSVH{I|L};VY{I|L}[AG]NWSVH{I|L};VY{I|L}QGGWSVH{I|L};{[WN]|[YH]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}NQ{I|L}M{I|L};{[WN]|[YH]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}NQP{M(Oxidation (M))|F}{I|L};{[WN]|[YH]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}GGQ{I|L}M{I|L};{[WN]|[YH]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}N[AG]{I|L}M{I|L};VY{I|L}[AG]GGWSVH{I|L};[YV]{I|L}QHYSVH{I|L};{I|L}[YV]QNWSVH{I|L} 6.4338;5.7051;5.7051;5.5346;4.8175;4.8059;4.8059;4.6765;4.3978;4.3698 -;-;-;-;-;-;-;-;-;- 903 + NaN NaN 125586.7 NaN 12109 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15318 66.42 NaN 170840 35 0 26015 0.262 + 14909 LLAPHLIGEF 10 52 555.3210695548744 1108.6275861765487 2 555.3232421875 MULTI HCD FTMS 0 0 0 15310 44686.25 0.9811602527381698 2 -0.03900909423828125 8 Unmodified _LLAPHLIGEF_ ENSG00000138075|ENST00000405322|ABCG5;nc|ENSG00000138075|Q9H222-2|ABCG5 14.838274106304384 0.3723198072575719 1 {I|L}W{I|L}{M(Oxidation (M))|F} 4 7 28.761 0 0 2.5943 0 0 531.31743056465 0 531.31743056465 0 26.771081482726373 0 0 0 0.7614393726401688 0 0 0 {I|L}W{I|L}{M(Oxidation (M))|F} 2.5943 - 21 NaN NaN 112627.7 NaN 12110 3206 15310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15320 66.424 NaN 266350 35 0 30356 0.327 + -1 KDMRYQML 8 77 558.7627402255438 1115.5109275178875 2 558.762939453125 MULTI HCD FTMS 0 0 0 15319 93451.9765625 0.03725341746534424 17 -0.39699554443359375 1 2 Oxidation (M) _KDM(Oxidation (M))RYQM(Oxidation (M))L_ REV__ENST00000491936.5_1_1:25664838-25679420:+|nuORF 16.942295170755138 0.46913822049235215 1 VT{I|L} 3 -1 30.688 0 0 2.751 0 0 784.2973257883132 0 784.2973257883132 0 5.194093936868285 0 0 0 0.5 0 0.25 0 VT{I|L} 2.751 - 133 NaN NaN 126341.6 NaN 12111 3207 15319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15321 66.429 NaN 205020 35 0 8324.9 0.261 + 22750 QYHFVFNNF 9 66 608.2824006306911 1214.550248328182 2 608.2838745117188 MULTI HCD FTMS 0 0 0 15319 34706.4296875 0.2873647429789124 3 -0.06488800048828125 2 Unmodified _QYHFVFNNF_ nc|ENSG00000225830|P0DP91|ERCC6 28.494509381512117 0.11816142465008336 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}N 4 6 31.525 0 0 2.5956 0 0 674.3192005841812 0 674.3192005841812 0 27.54559128265509 0 0 0 1.079689690656103 0 0 0.3807196863200844 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}N 2.5956 - 63 NaN NaN 119533.3 NaN 12112 3207 15319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15323 66.434 NaN 1322500 35 0 700170 0.327 -1 0 66 427.3023667931273 852.5901806530546 2 427.3026428222656 MULTI HCD FTMS 0 0 0 15322 782820.8125 1 0 0 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.4971 0 0 687.5111839262953 0 687.5111839262953 0 6.197391189600372 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4971 - 6 + NaN NaN 285251.4 NaN 12113 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15324 66.438 NaN 834650 35 0 61363 0.261 + 34337 YPEEFEKLL 9 104 584.3000920349472 1166.5856311366942 2 584.3004760742188 MULTI HCD FTMS 0 0 0 15322 461100.375 0.6466815784781853 2 -0.05533599853515625 2 Unmodified _YPEEFEKLL_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 96.93554129104106 0.004344229100022454 1 YPEE{M(Oxidation (M))|F}EK{I|L}{I|L} 9 0 + 98.189 0 0 8.4168 8.4168 87.794 0 0 0 1.2233892778416902 1.2233892778416902 1.2233892778416902 1.2233892778416902 0 3.1237125054200234 1.5228787452803376 0.6139829889124311 0 + + YPEE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}EK{I|L}{I|L};[YE]PE{M(Oxidation (M))|F}EK{I|L}{I|L};[EP]YE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]Y{I|L}{I|L};[EP]EY{M(Oxidation (M))|F}EK{I|L}{I|L};YP{M(Oxidation (M))|F}EEEK{I|L}{I|L};YP[K{I|L}]{M(Oxidation (M))|F}EEE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}[K{I|L}]E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]{I|L}Y{I|L} 8.4168;8.3119;6.3844;6.3013;5.8836;5.7863;5.561;5.432;5.303;5.1324 +;+;-;-;-;-;-;-;-;- + 2116 + NaN NaN 209409.8 NaN 12114 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15325 66.442 NaN 803860 35 0 109800 0.261 + 5172 FFDAELSQM 9 94 552.2390895993532 1102.4636262655063 2 552.2393798828125 MULTI HCD FTMS 0 0 0 15322 306624.8125 0.08918940488851318 48 -1.2512359619140625 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 129.77232118876745 0.0006187813247758304 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 83.179 0 0 7.5448 7.5448 90.734 0 0 0 3.65279269351241 67.48265324203246 3.65279269351241 9.208187539523749 0 2.774227503252014 0 1.4802046884880937 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SM[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAEK{[CP]|[EA]}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YCEADE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP] 7.5448;6.7096;5.393;3.7632;3.4347;2.3579;2.2446;1.7854 +;-;-;-;-;-;-;- + 1611 NaN NaN 210308.5 NaN 12115 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15326 66.445 NaN 618940 35 0 35391 0.261 + 2897 DYSPYFKTI 9 94 567.2791460627044 1132.5437391922087 2 567.2789306640625 MULTI HCD FTMS 0 0 0 15322 314721.6875 0.012764433604413861 124 -3.3105239868164062 4 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 74.19965305603844 0.007729275404663812 1 K{M(Oxidation (M))|F}YPSEM 7 8 46.35 0 0 4.0926 0 0 232.14210707832189 0 232.14210707832189 0 5.026318764348204 0 0 0 1.5629529932484498 0 0.7302046884880937 0 K{M(Oxidation (M))|F}YPSEM 4.0926 - 598 NaN NaN 187200.5 NaN 12116 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15327 66.448 NaN 779490 35 0 106740 0.261 -1 0 74 604.7680411660131 1207.521529398826 2 604.7684326171875 MULTI HCD FTMS 0 0 0 15322 290996.625 0.09131040421953096 48 -1.2512359619140625 5 NaN NaN 1 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 50.895 0 0 4.2148 0 0 262.0953541486344 0 262.0953541486344 0 33.90530909766723 0 0 0 1.2887254899964358 0 0 0.3807196863200844 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.2148 - 378 NaN NaN 200523.5 NaN 12117 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15328 66.452 NaN 112800 35 0 13713 0.263 -1 0 44 495.2244314792502 494.2171550126502 1 495.2326965332031 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 {[QN]|[E{I|L}]|[KN]}W 3 -1 6.9627 0 0 1.4088 0 0 0 62.990567448450214 62.990567448450214 -1.9897000433601875 0 -1.9897000433601875 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}W 1.4088 - 8 NaN NaN 97849.6 NaN 12118 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15329 66.455 NaN 132450 35 0 17011 0.261 + 24992 RYVIIPTTF 9 49 555.3210695548744 1108.6275861765487 2 555.3213500976562 MULTI HCD FTMS 0 0 0 15322 12316.8974609375 0.2704377795345002 4 -0.10761260986328125 7 Unmodified _RYVIIPTTF_ ENSG00000149260|ENST00000648180|CAPN5;ENST00000527129.1_1_11:76831698-76834913:+|nuORF 13.90604991867851 0.24021115267848145 1 T{M(Oxidation (M))|F} 2 7 21.454 0 0 1.9352 0 0 842.5093250959 0 842.5093250959 0 14.463950151760656 0 0 0 0 0 0.5 0 + T{M(Oxidation (M))|F} 1.9352 + + 7 NaN NaN 99386.6 NaN 12119 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15330 66.458 NaN 178660 35 0 31866 0.261 + 22001 QFHRCEDAQM 10 50 632.7666365078092 NaN 0 632.78515625 PEAK HCD FTMS 0 0 0 15322 16450.0859375 0.5963778927529461 -1 0.009552001953125 8 Unmodified _QFHRCEDAQM_ REV__ENST00000311028.4_1_8:102699264-102699300:-|nuORF 3.2813086475875832 0.33737594360511275 1 A 1 -1 6.9897 0 0 0.55319 0 0 915.3750871251901 274.0825289361938 1189.457616061384 0 0 0 0 0 0 0 0 0 A 0.55319 + + 8 + NaN NaN 107273.8 NaN 12120 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15331 66.462 NaN 216910 35 0 10072 0.261 + 31803 VYMDWYEKF 9 65 648.7840025842971 NaN 0 648.7839965820312 PEAK HCD FTMS 0 0 0 15322 52272.5625 0.6420901300045555 10 -0.2410888671875 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 53.31671820480216 0.03794897575274257 1 P{M(Oxidation (M))|F}DWYE 6 4 43.225 0 0 3.3364 0 0 165.07673651255942 290.15094934635005 455.22768585890947 0 0 0 0 0 2.110924374808178 0 0 0 P{M(Oxidation (M))|F}DWYE 3.3364 - 78 + NaN NaN 112430.3 NaN 12121 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15332 66.465 NaN 45715 35 0 8406.6 0.264 + 8743 HHHIALEL 8 32 485.26640345515 NaN 0 484.8245544433594 PEAK HCD FTMS 0 0 0 15322 9653.8916015625 0.1527880145614358 -6 0.1436767578125 10 Unmodified _HHHIALEL_ REV__ENSG00000160145|ENST00000682506|KALRN;REV__nc|ENSG00000160145|O60229-2|KALRN;REV__nc|ENSG00000160145|O60229|KALRN 5.230669730166228 0.38822285293237185 1 E 1 -1 11.237 0 0 1.1602 0 0 131.09480534604376 705.3598116510374 836.4546169970811 0 0 0 0 0 0.4247425010840047 0 0 0 E 1.1602 + + 1 + NaN NaN 94747.4 NaN 12122 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15333 66.468 NaN 30193 35 0 4270.6 0.261 + 30224 VILVLLGGV 9 28 441.80596923828125 NaN 0 441.80596923828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _VILVLLGGV_ REV__ENSG00000083457|ENST00000263087|ITGAE 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88900.9 NaN 12123 3208 15322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15335 66.473 NaN 1222200 35 0 134450 0.327 + 19706 NYAELLCVNH 10 100 616.7903330166926 1231.566113100185 2 616.7905883789062 MULTI HCD FTMS 0 0 0 15334 504008 0.7313488374286495 3 -0.06845855712890625 1 Carbamidomethyl (C) _NYAELLC(Carbamidomethyl (C))VNH_ REV__ENSG00000276023|ENST00000617516|DUSP14 47.748688679222035 0.08597705450879027 1 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L} 9 -1 + 75.028 0 0 6.092 6.092 90.98 0 0 0 60.07901543333617 7.147642715192504 7.147642715192504 18.807196863200843 0 2.5356668758921828 1.6989700043360187 0.3807196863200844 0 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L};NYA[{M(Oxidation (M))|F}V]V[YN]GW;NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VY{[VA]|[{I|L}G]}GW;NYAVV{M(Oxidation (M))|F}[YN]GW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YN]VY{[QV]|[N{I|L}]|[RA]|[KV]}W;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YN]VW[YN]{I|L};[{M(Oxidation (M))|F}E][HQ][WR]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YN]VWK{[{M(Oxidation (M))|F}D]|MM} 6.092;4.5649;4.5521;3.5074;2.3312;1.397;0.99274;0.76519 -;-;-;-;-;-;-;- 1120 + NaN NaN 273268.7 NaN 12124 3209 15334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15336 66.478 NaN 316680 35 0 47951 0.261 + 5755 FPAGYMYPSM 10 72 590.2457738184258 1178.4769947036516 2 590.2465209960938 MULTI HCD FTMS 0 0 0 15334 115932.7734375 0.5326411037807359 41 -1.0595169067382812 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 74.42276476219924 0.012344753082416305 1 M{[DS]|[MA]|[CV]|TT}YWYPSM 9 4 + 59.204 0 0 5.0237 5.0237 84.972 0 0 0 39.34324671144019 0.13051521653522968 0.13051521653522968 7.984550065040281 0 0.8494850021680094 0 1.836696871556164 0 M{[DS]|[MA]|[CV]|TT}YWYPSM;M{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{[DA]|[EG]}YPSM;M[YG][PS]{M(Oxidation (M))|F}YPSM;[WY][VS]{M(Oxidation (M))|F}YPSM;MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE];M{[DS]|[MA]|[CV]|TT}Y{M(Oxidation (M))|F}[W{I|L}]SM;M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE];M[AG][Y{I|L}]{M(Oxidation (M))|F}Y[WE];{[MS]|[{M(Oxidation (M))|F}A]}P{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))Q]PSM;[PS]M{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))Q]PSM 5.0237;4.3462;4.3268;4.3018;4.1547;4.0594;3.7292;3.3688;2.6103;2.6103 -;-;-;-;-;-;-;-;-;- 1351 + NaN NaN 134349.2 NaN 12125 3209 15334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15337 66.481 NaN 985080 35 0 80047 0.261 + 12743 KYDEIFYNL 9 79 602.7977747539607 1203.5809965747212 2 603.3015747070312 MULTI HCD FTMS 0 0 0 15334 285174.46875 0.06111431720334534 -9 0.23517608642578125 3 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 69.33821966488729 0.009302356455414924 1 [YV]EEK{M(Oxidation (M))|F}YN{I|L} 9 3 + 73.783 0 0 6.1303 6.1303 83.786 0 0 0 4.431890546242343 16.478174818886373 4.431890546242343 1.1143281941665606 0 1.774227503252014 1.3010299956639813 0 0.6989700043360187 [YV]EEK{M(Oxidation (M))|F}YN{I|L};[YV]GSE{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]GS{I|L}E{M(Oxidation (M))|F}YN{I|L};[YV]EEK{M(Oxidation (M))|F}YGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};[YV]EE{M(Oxidation (M))|F}KYN{I|L} 6.1303;6.0377;5.8802;5.7621;5.512;5.457;5.4055;5.3652;5.2619;5.1967 -;-;-;-;-;-;-;-;-;- 3253 NaN NaN 243289.1 NaN 12126 3209 15334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15338 66.484 NaN 126360 35 0 9252 0.262 + 16183 LPVHVFEAL 9 60 512.7947045619219 1023.5748561906438 2 512.79541015625 MULTI HCD FTMS 0 0 0 15334 52503.890625 0.1593780334720294 11 -0.2471466064453125 4 Unmodified _LPVHVFEAL_ ENSG00000100982|ENST00000372409|PCIF1 12.531546534597751 0.2520865569484384 1 {I|L}{M(Oxidation (M))|F}EA{I|L} 5 4 39.949 0 0 3.9028 0 0 432.24202162910314 0 432.24202162910314 0 29.49092531119419 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F}EA{I|L} 3.9028 - 40 NaN NaN 106511.6 NaN 12127 3209 15334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15340 66.489 NaN 2409900 35 0 273110 0.327 + 5940 FPDPNVKYVF 10 116 613.3165422889869 1224.6185316447736 2 613.3167724609375 MULTI HCD FTMS 0 0 0 15339 1108144.125 0.844078011837835 -4 0.0943450927734375 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 97.28384467902475 0.00044335720165875547 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKYV 9 1 66.242 0 0 5.4092 0 0 0 162.0499477363866 162.0499477363866 24.075105882938757 0 0 0 0 2.256625672816984 1.154901959985743 1.1496498648046138 1.1465912507003613 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKYV 5.4092 + + 4376 NaN NaN 453445.2 NaN 12128 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15341 66.494 NaN 1853900 35 0 118200 0.261 + 17424 LYRLQFNEF 9 117 615.3191920903099 1228.6238312474197 2 615.319580078125 MULTI HCD FTMS 0 0 0 15339 1045241.6875 0.8629557656832518 -4 0.0943450927734375 2 Unmodified _LYRLQFNEF_ ENSG00000122644|ENST00000651779|ARL4A;ENST00000404372.1_1_6:151256177-151256594:+|nuORF 187.2963844392146 5.770654906347067E-13 1 {I|L}YR{I|L}Q{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 9 0 + 96.135 0 0 7.8246 7.8246 86.392 0 0 0 0.3393660983742848 0.3393660983742848 0.3393660983742848 0.3393660983742848 0 3.048455006504028 1.3979400086720375 1.6549471895720984 1.1791746928241125 + + {I|L}YR{I|L}Q{M(Oxidation (M))|F}NE{M(Oxidation (M))|F};[Y{I|L}]R{I|L}Q{M(Oxidation (M))|F}NE{M(Oxidation (M))|F};{I|L}YR{I|L}[AG]{M(Oxidation (M))|F}NE{M(Oxidation (M))|F};[Y{I|L}]R{I|L}Q{M(Oxidation (M))|F}GGE{M(Oxidation (M))|F};[Y{I|L}]R{I|L}[AG]{M(Oxidation (M))|F}NE{M(Oxidation (M))|F};{I|L}YR{I|L}Q{M(Oxidation (M))|F}GGE{M(Oxidation (M))|F};[YR]{I|L}{I|L}Q{M(Oxidation (M))|F}NE{M(Oxidation (M))|F};[Y{I|L}]R{I|L}[AG]{M(Oxidation (M))|F}GGE{M(Oxidation (M))|F};[YR]{I|L}{I|L}Q{M(Oxidation (M))|F}GGE{M(Oxidation (M))|F};[YR]{I|L}{I|L}[AG]{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 7.8246;7.797;7.0752;7.0476;7.0476;6.6034;6.5585;6.3016;5.809;5.809 +;+;-;-;-;-;-;-;-;- + 2032 + NaN NaN 362141.8 NaN 12129 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15342 66.497 NaN 2214100 35 0 359750 0.261 + 12838 KYFEVPSVL 9 109 541.3000932676571 1080.585633602114 2 541.30029296875 MULTI HCD FTMS 0 0 0 15339 902684.5 0.8240585030419459 -4 0.0943450927734375 3 Unmodified _KYFEVPSVL_ ENSG00000131966|ENST00000254286|ACTR10 74.19965305603844 0.007729275404663812 1 [YK]{M(Oxidation (M))|F}EVPSV{I|L} 9 0 + 68.954 0 0 6.3812 6.3812 84.009 0 0 0 0.6687674038007998 15.795671638727029 0.6687674038007998 0.6687674038007998 0 2.3001648626366045 0 1.309894379144197 0 + + [YK]{M(Oxidation (M))|F}EVPSV{I|L};[Y{M(Oxidation (M))|F}]KEVPSV{I|L};[{I|L}T]{[TV]|[{I|L}S]}V{[{M(Oxidation (M))|F}C]|[YS]}W{I|L};[{I|L}T]{[TV]|[{I|L}S]}[WY]SV{I|L};[YV]{[WT]|[RM]}[{I|L}T]SV{I|L};[YV]{I|L}[YQ]PSV{I|L};[{I|L}T][Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}SV{I|L};[YV]{[WT]|[RM]}V{[DS]|[MA]|[CV]|TT}V{I|L};[YV]{I|L}[YQ]{[TV]|[{I|L}S]}[VP];[{I|L}T]{[TV]|[{I|L}S]}[YQ]{I|L}P{M(Oxidation (M))|F} 6.3812;6.3193;3.5832;3.4243;2.327;2.3033;1.8024;1.4871;0.42833;0.21579 +;-;-;-;-;-;-;-;-;- + 1919 NaN NaN 436374 NaN 12130 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15343 66.501 NaN 1371900 35 0 149620 0.261 + 12744 KYDEIFYNL 9 99 602.7977747539607 1203.5809965747212 2 602.7982177734375 MULTI HCD FTMS 0 0 0 15339 517819.6875 0.07955736070424485 -8 0.19901275634765625 4 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 107.09958533191995 0.0034159042678574016 1 [YV]EEK{M(Oxidation (M))|F}YN{I|L} 9 3 + 75.017 0 0 6.2328 6.2328 83.605 0 0 0 0.45757490560673375 13.467874862246553 0.45757490560673375 0.45757490560673375 0 1.8252574989159953 1.0969100130080565 1.0138793319624577 0.3807196863200844 [YV]EEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};[YV]GSE{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L} 6.2328;6.1948;6.1927;6.1422;6.1041;5.986;5.9802;5.948;5.8371;5.8017 -;-;-;-;-;-;-;-;-;+ + 12488 NaN NaN 300372.3 NaN 12131 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15344 66.504 NaN 314350 35 0 78113 0.261 -1 HPDVLTIML 9 50 527.7836264063386 NaN 0 527.8003540039062 PEAK HCD FTMS 0 0 0 15339 25498.06640625 0.5708850675209369 -4 0.0943450927734375 5 Oxidation (M) _HPDVLTIM(Oxidation (M))L_ ENSG00000162129|ENST00000538039|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078|CLPB 16.942295170755138 0.2079222001251384 1 {M(Oxidation (M))|F}{I|L}T 3 -1 19.526 0 0 1.8533 0 0 131.060361145198 558.269630375157 689.329991520355 0 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}{I|L}T 1.8533 - 42 + NaN NaN 139749.1 NaN 12132 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15345 66.507 NaN 361980 35 0 23735 0.261 + 31776 VYLQNWSHVL 10 72 629.8338038337585 1257.6530547343168 2 629.8344116210938 MULTI HCD FTMS 0 0 0 15339 112966.6328125 0.7939494972766912 -1 0.01618194580078125 6 Unmodified _VYLQNWSHVL_ ENSG00000169727|ENST00000578552|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098|GPS1 66.54955139489424 0.02167381291790446 1 VY{I|L}QNWSVH{I|L} 10 2 + 102.73 0 0 8.1686 8.1686 91.027 0 0 0 63.859053762354705 8.507112333562858 8.507112333562858 9.164539485499262 0 2.9291746928241125 1.6989700043360187 0.3494850021680094 0.6861818737241735 VY{I|L}QNWSVH{I|L};VY{I|L}QGGWSVH{I|L};VY{I|L}[AG]NWSVH{I|L};[YV]{I|L}QHYSVH{I|L};[YV]{I|L}QHYSHV{I|L};[YV]{I|L}QHNQ{I|L}M{I|L};VY{I|L}[AG]GGWSVH{I|L};VY{I|L}QNHQ{I|L}M{I|L};[YV]{I|L}[AG]HYSVH{I|L};[YV]{I|L}NQHQ{I|L}M{I|L} 8.1686;7.4399;7.4399;6.8674;6.7274;6.3791;6.1685;6.1432;5.836;5.8233 -;-;-;-;-;-;-;-;-;- 2014 + NaN NaN 148773.4 NaN 12133 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15346 66.511 NaN 680810 35 0 48277 0.261 + 11249 IYLLIHNNF 9 89 573.8186455363372 1145.6227381394742 2 573.8179931640625 MULTI HCD FTMS 0 0 0 15339 133905.78125 0.23394411615112154 -4 0.0943450927734375 7 Unmodified _IYLLIHNNF_ ENSG00000143119|ENST00000271324|CD53;ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF 146.00731375242447 1.3047045798573153E-05 1 [Y{I|L}]{I|L}{I|L}{I|L}HNN{M(Oxidation (M))|F} 9 0 + 80.882 0 0 7.0601 7.0601 89.889 0 0 0 7.60090614668492 61.373949984654246 7.60090614668492 9.208187539523749 0 2.3807196863200843 1.6989700043360187 0 0.3252574989159953 + + [Y{I|L}]{I|L}{I|L}{I|L}HNN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HNGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HGGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HGGGG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))Q]{I|L}{I|L}[KG][VS];{[CT]|[{M(Oxidation (M))|F}G]}[DG][H{I|L}]{I|L}{I|L}K{M(Oxidation (M))|F} 7.0601;6.2563;6.2563;5.1725;1.7331;0.7305 +;-;-;-;-;- + 876 NaN NaN 205205.4 NaN 12134 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15347 66.514 NaN 305750 35 0 70636 0.261 + 10834 ITRDGFLLL 9 62 524.3132666570325 1046.611980380865 2 524.3133544921875 MULTI HCD FTMS 0 0 0 15339 86671.359375 0.7652408091403985 1 -0.036102294921875 8 Unmodified _ITRDGFLLL_ ENSG00000087237|ENST00000200676|CETP;nc|ENSG00000087237|P11597-2|CETP 13.042465956692817 0.2476723265019929 1 {I|L}{I|L}{I|L} 3 6 31.198 0 0 2.9808 0 0 689.3495052727251 0 689.3495052727251 0 23.239087409443187 0 0 0 0.5 0 0 0 + {I|L}{I|L}{I|L} 2.9808 + + 22 NaN NaN 132827.9 NaN 12135 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15348 66.517 NaN 220330 35 0 58364 0.261 + 3231 EDLLELSHLIW 11 45 456.5784833434032 1366.7136206304097 3 456.57855224609375 MULTI HCD FTMS 0 0 0 15339 64488.234375 0.023758402729583274 47 -1.2257308959960938 9 Unmodified _EDLLELSHLIW_ REV__ENSG00000257365|ENST00000246166|FNTB;REV__ENST00000554334.5_1_14:65482315-65499209:+|nuORF;REV__ENST00000555372.5_1_14:65453620-65488730:+|nuORF;REV__nc|ENSG00000257365|P49356-2|FNTB 2.6312355333042263 0.4073809613003177 1 {I|L}W 2 -1 25.969 0 0 1.9001 0 0 1049.543579221977 0 1049.543579221977 0 17.47425010840047 0 0 0 0.5 0 0 0 {I|L}W 1.9001 + + 15 NaN NaN 122074.4 NaN 12136 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15349 66.521 NaN 172550 35 0 23508 0.261 + 33082 YDPTAFEKPS 10 63 577.7717863530306 1153.5290197728611 2 577.7723999023438 MULTI HCD FTMS 0 0 0 15339 73408 0.2681461497516597 10 -0.23096466064453125 10 Unmodified _YDPTAFEKPS_ REV__nc|ENSG00000204053|P12525|MYCLP1 8.745405648335112 0.42901288225909884 1 EAQ{I|L} 4 -1 35.477 0 0 3.0756 0 0 694.2963124005875 0 694.2963124005875 0 28.48767215588211 0 0 0 0.3494850021680094 0 0.3054621874040891 0 EAQ{I|L} 3.0756 - 28 NaN NaN 109269.6 NaN 12137 3210 15339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15351 66.525 NaN 273300 35 0 22822 0.327 + 15669 LPEKLTIYTTL 11 58 646.3787783227858 1290.7430037123715 2 646.3787231445312 MULTI HCD FTMS 0 0 0 15350 85708.734375 0.6400400591015266 7 -0.14965057373046875 1 Unmodified _LPEKLTIYTTL_ ENSG00000136937|ENST00000375147|NCBP1 16.565877749689598 0.3127433757948945 1 {M(Oxidation (M))|F}EY{I|L}YT[{I|L}T] 8 5 37.986 0 0 2.943 0 0 242.1990714917452 0 242.1990714917452 0 14.621192331087641 0 0 0 1.6677353201839438 0 0.6694451763165201 0 {M(Oxidation (M))|F}EY{I|L}YT[{I|L}T] 2.943 - 194 + NaN NaN 126295.4 NaN 12138 3211 15350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15352 66.53 NaN 526710 35 0 51216 0.262 + 27084 SYMGHFDLL 9 106 549.7486704469052 1097.4827879606103 2 549.7493896484375 MULTI HCD FTMS 0 0 0 15350 51421.875 0.40505602474989544 20 -0.49530792236328125 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 42.09456458481378 0.05572955244001856 1 [YV]{I|L} 3 7 24.181 0 0 2.2033 0 0 0 719.2435766441973 719.2435766441973 4.206962271689747 0 0 0 0 0 1.5228787452803376 0 0 [YV]{I|L} 2.2033 - 441 NaN NaN 175228.7 NaN 12139 3211 15350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15353 66.533 NaN 208610 35 0 16701 0.261 + 16343 LRQVGEGCNFL 11 67 618.3133911834562 NaN 0 618.3141479492188 PEAK HCD FTMS 0 0 0 15350 38557.0234375 0.4246100062169119 -3 0.09143829345703125 3 Unmodified _LRQVGEGCNFL_ REV__ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;REV__ENSG00000006744|ENST00000338034|ELAC2;REV__ENST00000484122.5_1_17:12899737-12920449:-|nuORF;REV__ENST00000609345.1_1_17:12920217-12920930:-|nuORF;REV__nc|ENSG00000006744|Q9BQ52-4|ELAC2 4.897010918128616 0.3282287337590871 1 TVY 3 -1 14.693 0 0 1.1901 0 0 439.22784330265614 429.1985262506469 868.4263695533031 0 0 0 0 0 0 0 0 0 TVY 1.1901 - 150 + NaN NaN 108168 NaN 12140 3211 15350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15354 66.537 NaN 146040 35 0 10814 0.261 + 12509 KRMPMFYLIS 10 54 643.3429158803186 1284.6712788274372 2 643.3453369140625 MULTI HCD FTMS 0 0 0 15350 34427.03125 0.03597927616684725 28 -0.7281341552734375 4 Unmodified _KRMPMFYLIS_ ENST00000295974.12_1_4:40815451-40815556:-|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}{[TV]|[{I|L}S]} 3 7 15.458 0 0 1.2032 0 0 953.4629754207918 0 953.4629754207918 0 9.973024840566469 0 0 0 0.5 0 0 0 + {I|L}{[TV]|[{I|L}S]} 1.2032 + + 5 NaN NaN 118723.8 NaN 12141 3211 15350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15356 66.542 NaN 3429900 35 0 198060 0.327 + 27180 SYNNFFRMF 9 123 621.2738121112648 1240.5330712893294 2 621.2739868164062 MULTI HCD FTMS 0 0 0 15355 2414556.5 0.477707299986141 14 -0.3420867919921875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 208.14542850568068 7.55743023528371E-18 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 117.36 0 0 9.4608 0 0 0 208.03635584049064 208.03635584049064 81.68601691445583 0 0 0 0 2.5356668758921828 2 1.4040461585048922 1.2753187046026266 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.4608 - 7372 + NaN NaN 610452.2 NaN 12142 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15357 66.546 NaN 942960 35 0 221860 0.261 + 19905 NYFIPSHYF 9 81 594.2814063066825 1186.5482596801648 2 595.3021240234375 MULTI HCD FTMS 0 0 0 15355 20038.986328125 0.11254606178990953 -15 0.38542938232421875 2 Unmodified _NYFIPSHYF_ ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH 20.453626601364224 0.18364154288633264 1 [YV]P{I|L}MKEY 8 6 36.095 0 0 3.042 0 0 0 160.01496021465564 160.01496021465564 -0.6757411703770089 0 -0.6757411703770089 0 0 0 2 0 0 [YV]P{I|L}MKEY 3.042 - 1231 NaN NaN 241861.8 NaN 12143 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15358 66.55 NaN 1003000 35 0 328090 0.262 -1 TAMDVVYAL 9 60 499.7466991268183 997.4788453204367 2 499.7468566894531 MULTI HCD FTMS 0 0 0 15355 510281.75 0.5612397595068161 -11 0.28076934814453125 3 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 1 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.215559014199 0 533.215559014199 0 18.738350322034236 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 46 NaN NaN 227430.2 NaN 12144 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15359 66.553 NaN 1126500 35 0 178000 0.261 + 35570 YYIDKLEYL 9 91 610.3158445586632 1218.6171361841264 2 610.3162231445312 MULTI HCD FTMS 0 0 0 15355 440055.625 0.1637507065508004 -6 0.1466217041015625 4 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 96.93554129104106 0.004344229100022454 1 YY{I|L}DK{I|L}EY{I|L} 9 0 + 93.259 0 0 7.6529 7.6529 94.794 0 0 0 4.902953031565858 4.902953031565858 4.902953031565858 29.948500216800937 0 3.004432191740108 2 1.4163865622122673 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK[YE]{I|L}{I|L};YY{I|L}{[VA]|[{I|L}G]}[VS]EY{I|L};{I|L}YYDK{I|L}EY{I|L};YY{I|L}[YE]{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}EY{I|L};{NN|[MP]|[D{I|L}]|[EV]}YYK{I|L}EY{I|L};YY{I|L}[YE]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYY{I|L}EY{I|L};YY{I|L}[YE]A[TA]{I|L}{I|L} 7.6529;5.1953;5.0797;4.313;4.0901;3.7723;3.4321;3.3951;3.3154;3.2376 +;-;-;-;-;-;-;-;-;- + 1518 + NaN NaN 259434.8 NaN 12145 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15360 66.556 NaN 305070 35 0 54004 0.262 + 17583 LYVTPTPLQ 9 62 516.291978314799 NaN 0 516.2739868164062 PEAK HCD FTMS 0 0 0 15355 26807.806640625 1 0 0 5 Unmodified _LYVTPTPLQ_ ENSG00000169169|ENST00000598293|CPT1C;ENST00000295404.9_1_19:50200719-50213852:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C 13.50788311687929 0.22978952576613207 1 QV 2 8 10.969 0 0 1.0644 0 0 131.12982942451146 669.2893660499377 800.4191954744492 0 0 0 0 0 0 0 0 0 QV 1.0644 - 31 + NaN NaN 134836.9 NaN 12146 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15361 66.56 NaN 366010 35 0 41105 0.261 + 24818 RYPQSIFSTF 10 75 623.3164157146421 1244.618278496084 2 624.3197021484375 MULTI HCD FTMS 0 0 0 15355 83867.1953125 0.7006681377541496 -1 0.01617431640625 6 Unmodified _RYPQSIFSTF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 38.61474834105838 0.1574278268413918 1 TS{M(Oxidation (M))|F}[HV]RS[{M(Oxidation (M))|F}T] 9 7 34.675 0 0 2.786 0 0 164.07556688693177 0 164.07556688693177 0 19.35727478186054 0 0 0 0.6549471895720984 0 1.2059771852360797 0 TS{M(Oxidation (M))|F}[HV]RS[{M(Oxidation (M))|F}T] 2.786 - 300 + NaN NaN 145237.8 NaN 12147 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15362 66.563 NaN 258170 35 0 24790 0.261 + 3633 ELFEVDVEIAK 11 63 646.3422000007356 1290.669847068271 2 646.3426513671875 MULTI HCD FTMS 0 0 0 15355 96787.0390625 1 0 0 7 Unmodified _ELFEVDVEIAK_ ENST00000506450.1_1_4:25624416-25624897:+|nuORF 32.89776655970281 0.18269067959614227 1 {[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EVDV{[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T] 11 3 + 59.697 0 0 4.6253 4.6253 88.014 0 0 0 43.49926060438829 0.7198415202650565 0.7198415202650565 15.740312677277188 0 0.6237125054200234 2 0.5 0 {[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EVDV{[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T];{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EV{[NV]|[RG]}{NN|[MP]|[D{I|L}]|[EV]}[{I|L}T];{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}ERR{NN|[MP]|[D{I|L}]|[EV]}[{I|L}T];[EC]T[RK]DV{[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T] 4.6253;3.4057;2.6255;1.4105 -;-;-;- 150 + NaN NaN 128089.1 NaN 12148 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15363 66.566 NaN 308610 35 0 95132 0.264 + -1 RIYPRMCIVF 10 51 452.24289115489535 1353.7068440648861 3 452.57763671875 MULTI HCD FTMS 0 0 0 15355 32003.7265625 0.4569485459551265 -2 0.052276611328125 8 Carbamidomethyl (C) _RIYPRMC(Carbamidomethyl (C))IVF_ REV__ENSG00000171509|ENST00000307765|RXFP1;REV__nc|ENSG00000171509|Q9HBX9-2|RXFP1;REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1;REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1 3.5870582119611467 0.4563168352879256 1 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.2877 0 0 1089.559548998283 0 1089.559548998283 0 30.969100130080562 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.2877 + + 6 + NaN NaN 135424 NaN 12149 3212 15355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15365 66.571 NaN 4923900 35 0 977440 0.327 + 5941 FPDPNVKYVF 10 119 613.3165422889869 1224.6185316447736 2 613.33251953125 MULTI HCD FTMS 0 0 0 15364 1127427.125 0.8587659535369971 -1 0.02948760986328125 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 64.68765255105646 0.024373786448983335 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKYV 9 1 55.178 0 0 4.5057 0 0 0 162.03753259653504 162.03753259653504 -6.43818696451612 0 -6.43818696451612 0 0 1.9921276860725623 1.2218487496163564 1.113364334130467 0.5283773187068795 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPNVKYV 4.5057 + + 9790 NaN NaN 736248.3 NaN 12150 3213 15364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15366 66.576 NaN 427090 35 0 50562 0.261 + 32824 WVDEMQVQL 9 69 582.2730897490377 1162.5316265648753 2 582.2740478515625 MULTI HCD FTMS 0 0 0 15364 214352.359375 0.6068531306312364 7 -0.149200439453125 2 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 61.60191391372663 0.015340508911304802 1 E{M(Oxidation (M))|F}QVQ{I|L} 6 3 66.235 0 0 5.6975 0 0 400.1751881330094 0 400.1751881330094 0 53.13608784304506 0 0 0 1.8494850021680094 0 0.2614393726401688 0.6989700043360187 + E{M(Oxidation (M))|F}QVQ{I|L} 5.6975 + + 245 NaN NaN 165841.8 NaN 12151 3213 15364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15367 66.579 NaN 1344500 35 0 256300 0.262 -1 0 77 467.2706223900158 1398.7900377702474 3 467.605712890625 MULTI HCD FTMS 0 0 0 15364 259700.96875 0.41184243794906955 -5 0.1371002197265625 3 NaN NaN 1 NY{I|L} 3 -1 52.435 0 0 3.7486 0 0 0 1005.5780100090481 1005.5780100090481 32.7962253513872 0 0 0 0 0.9247425010840047 2 0 0 NY{I|L} 3.7486 - 76 + NaN NaN 281338.2 NaN 12152 3213 15364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15368 66.582 NaN 199520 35 0 17544 0.261 + -1 YGRPCICTF 9 71 558.7509597068042 NaN 0 558.7626953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YGRPCIC(Carbamidomethyl (C))TF_ REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|1|fusion;REV__GPI-EYS|2|fusion;REV__nc|ENSG00000188107|Q5T1H1|EYS 4.3292370932331545 0.2742679634796037 1 {I|L} 1 -1 6.9897 0 0 0.62661 0 0 427.05152771263334 572.3295382135374 999.3810659261708 0 0 0 0 0 0 0 0 0 {I|L} 0.62661 + + 39 + NaN NaN 125371.1 NaN 12153 3213 15364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15369 66.586 NaN 102080 35 0 7252.7 0.261 + 12510 KRMPMFYLIS 10 51 643.3429158803186 1284.6712788274372 2 643.3427734375 MULTI HCD FTMS 0 0 0 15364 30613 0.03199327799418356 30 -0.770477294921875 5 Unmodified _KRMPMFYLIS_ ENST00000295974.12_1_4:40815451-40815556:-|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}{[TV]|[{I|L}S]} 3 7 14.705 0 0 1.1447 0 0 953.460073614407 0 953.460073614407 0 10.100906146684922 0 0 0 0.4247425010840047 0 0 0 + {I|L}{[TV]|[{I|L}S]} 1.1447 + + 9 NaN NaN 112701.5 NaN 12154 3213 15364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15371 66.591 NaN 850780 35 0 68948 0.327 + 20204 NYLHLDYNF 9 84 599.7801034295221 1197.5456539258441 2 599.7806396484375 MULTI HCD FTMS 0 0 0 15370 667199.75 0.5845834244646109 -2 0.04897308349609375 1 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 93.93812099017352 0.0044227730261779084 1 [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F} 9 0 + 90.085 0 0 7.5225 7.5225 90.701 0 0 0 16.249387366083 12.385606273598313 12.385606273598313 9.208187539523749 0 2.3494850021680094 1.5228787452803376 0 0.6747425010840047 + + [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DYGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYN{M(Oxidation (M))|F};[YG]G{I|L}H{I|L}DYN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYGG{M(Oxidation (M))|F};[YG]G{I|L}H{I|L}DYGG{M(Oxidation (M))|F};[H{I|L}][YN]{I|L}DYN{M(Oxidation (M))|F};[H{I|L}][YN]{I|L}DYGG{M(Oxidation (M))|F};[H{I|L}]D{I|L}YNYN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}YR[EP][QP]{M(Oxidation (M))|F} 7.5225;6.7536;6.1656;5.6573;5.3967;4.5374;3.832;3.063;2.9654;2.951 +;-;-;-;-;-;-;-;-;- + 873 NaN NaN 223716.8 NaN 12155 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15372 66.595 NaN 609670 35 0 56385 0.261 + 10044 IFDQSGTYL 9 75 522.2556636294779 1042.4967743257557 2 522.2559204101562 MULTI HCD FTMS 0 0 0 15370 492947.53125 1 0 0 2 Unmodified _IFDQSGTYL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 96.36657018975838 0.004359138328518304 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DNTGTY{I|L} 9 2 + 75.856 0 0 7.2764 7.2764 87.405 0 0 0 4.259687322722812 15.536298044881121 4.259687322722812 4.259687322722812 0 1.9247425010840047 0 1.2302046884880937 0.3494850021680094 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DNTGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}NTGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}QVTGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}N{I|L}TGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DGGTGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}GGTGTY{I|L};[YT][QP]TGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}[AG]VTGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}GG{I|L}TGTY{I|L};{I|L}[QA]{[YD]|[{M(Oxidation (M))|F}M]}GTY{I|L} 7.2764;6.8678;6.1716;6.0787;6.0579;5.6493;5.1902;4.9531;4.8602;4.4525 -;-;-;-;-;-;-;-;-;- 1045 NaN NaN 180873 NaN 12156 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15373 66.599 NaN 664750 35 0 87654 0.261 + 5173 FFDAELSQM 9 90 552.2390895993532 1102.4636262655063 2 552.2388305664062 MULTI HCD FTMS 0 0 0 15370 342339.09375 0.09957778626162363 54 -1.4007797241210938 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 142.0795815696625 1.719916958814042E-05 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D + + 83.312 4.437 1.0844 7.5569 7.5569 66.1 0 0 0 0 66.03805166187507 0 0 0 2.805462187404089 0 0.9194451763165201 0.7302046884880937 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 7.5569 + + 1515 + NaN NaN 183959.5 NaN 12157 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15374 66.602 NaN 290940 35 0 73699 0.261 + 34338 YPEEFEKLL 9 63 584.3000920349472 1166.5856311366942 2 585.28857421875 MULTI HCD FTMS 0 0 0 15370 62479.421875 0.3557012018921353 10 -0.23085784912109375 4 Unmodified _YPEEFEKLL_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 7.289230182591677 0.29575926068275815 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RN]QQY{I|L} 8 7 25.635 0 0 2.1974 0 0 0 127.0709744077616 127.0709744077616 6.42667503568731 0 0 0 0 0 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RN]QQY{I|L} 2.1974 - 215 NaN NaN 127541.1 NaN 12158 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15375 66.605 NaN 455800 35 0 40156 0.261 + 2801 DYILNVMKF 9 75 579.796843480503 1157.5791340278058 2 579.7964477539062 MULTI HCD FTMS 0 0 0 15370 147965.125 0.3391209968954807 -6 0.156585693359375 5 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 67.83816525789305 0.009787749748478139 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 82.189 0 0 7.1001 7.1001 93.891 0 0 0 24.13734275855269 68.74606867853579 24.13734275855269 30.440680443502757 0 2.504432191740108 1.6989700043360187 0 0.7302046884880937 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N;[Y{I|L}]D[YV]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VN{I|L}{I|L}DY{M(Oxidation (M))|F};[MT][KQ]{I|L}{I|L}DY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VGG{I|L}{I|L}DY{M(Oxidation (M))|F} 7.1001;4.4704;4.1129;1.4832;1.3757;0.7035;0.58025 +;-;-;-;-;-;- + 388 NaN NaN 166946.9 NaN 12159 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15376 66.609 NaN 316460 35 0 35583 0.261 + 14613 LFSGQGSLLQ 10 63 525.2845566523886 1048.554560371577 2 525.7850341796875 MULTI HCD FTMS 0 0 0 15370 126880.265625 1 0 0 6 Unmodified _LFSGQGSLLQ_ ENSG00000109133|ENST00000504986|TMEM33 17.11289562659939 0.35104376501799556 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[{M(Oxidation (M))|F}V][KQ]Q 8 8 + 27.669 0 0 2.6388 2.6388 82.036 0 0 0 10.75765943524473 1.2375773500637877 1.2375773500637877 7.034021960761265 0 0 1.6989700043360187 0 0.3054621874040891 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[{M(Oxidation (M))|F}V][KQ]Q;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[{M(Oxidation (M))|F}V]WVV;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[{M(Oxidation (M))|F}E]RVV;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}PQ;[{M(Oxidation (M))|F}E]K{[QN]|[E{I|L}]|[KN]}[KQ]Q;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]{[MG]|[TS]}WVV;[{M(Oxidation (M))|F}E]K{[QN]|[E{I|L}]|[KN]}WVV;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]{[MS]|[{M(Oxidation (M))|F}A]}RVV;R[{M(Oxidation (M))|F}V]{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C)){I|L}{I|L} 2.6388;1.9679;1.7568;1.649;1.1607;0.51043;0.4899;0.29934;0.040338 -;-;-;-;-;-;-;-;- 269 NaN NaN 151317.1 NaN 12160 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15377 66.612 NaN 539860 35 0 29813 0.261 + 31777 VYLQNWSHVL 10 93 629.8338038337585 1257.6530547343168 2 629.822021484375 MULTI HCD FTMS 0 0 0 15370 99556.59375 0.6997013683641106 3 -0.0749664306640625 7 Unmodified _VYLQNWSHVL_ ENSG00000169727|ENST00000578552|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098|GPS1 62.78007862980855 0.031311211223229926 1 [YV]{I|L}QNWSVH{I|L} 10 2 + 81.001 0 0 6.4407 6.4407 88.042 0 0 0 47.55810179117964 8.507112333562858 8.507112333562858 9.164539485499262 0 2.4040820565447216 1.6989700043360187 0.2742275032520141 0.2614393726401688 [YV]{I|L}QNWSVH{I|L};[YV]{I|L}QGGWSVH{I|L};[YV]{I|L}[AG]NWSVH{I|L};[YV]{I|L}QHYSVH{I|L};[YV]{I|L}QHNQ{I|L}M{I|L};[YV]{I|L}[AG]GGWSVH{I|L};[YV]{I|L}QHYSHV{I|L};{I|L}[YV]QNWSVH{I|L};[YV]{I|L}QH[VS]YH{I|L};[YV]{I|L}QHN[AG]{I|L}M{I|L} 6.4407;5.712;5.712;4.9451;4.8039;4.7783;4.6525;4.3909;4.1578;4.0752 -;-;-;-;-;-;-;-;-;- 1428 + NaN NaN 176224.7 NaN 12161 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15378 66.615 NaN 384160 35 0 25942 0.263 + 25944 SPDAPDFQL 9 77 495.2319898967236 988.4494268602472 2 495.2326354980469 MULTI HCD FTMS 0 0 0 15370 115968.0625 1 0 0 8 Unmodified _SPDAPDFQL_ ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}Q{I|L} 3 6 25.93 0 0 2.6233 0 0 582.2298451154312 0 582.2298451154312 0 5.576512587389637 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}Q{I|L} 2.6233 + + 150 NaN NaN 145849.1 NaN 12162 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15379 66.619 NaN 274570 35 0 44015 0.261 -1 MYSRLFYL 8 67 554.7789797521784 1107.5434065711568 2 554.7791137695312 MULTI HCD FTMS 0 0 0 15370 170861.328125 0.6603112261528322 -4 0.10124969482421875 9 Oxidation (M) _M(Oxidation (M))YSRLFYL_ nc|nan|O96002|CXorf1 18.13498045792455 0.4603629008820478 1 SYGD{I|L}{I|L} 6 -1 42.669 0 0 3.8526 0 0 441.22192841952545 0 441.22192841952545 0 32.84826562528984 0 0 0 1.3807196863200843 0 0.4247425010840047 0 SYGD{I|L}{I|L} 3.8526 - 125 NaN NaN 128006.8 NaN 12163 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15380 66.622 NaN 1060500 35 0 89506 0.261 + 31068 VTASNNISAAN 11 101 531.2647150187047 NaN 0 531.264404296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VTASNNISAAN_ ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1 19.361941925380144 0.26146265060873025 1 PTS{I|L}AS{I|L} 7 7 32.516 0 0 3.0661 0 0 164.00642639879237 224.11521326236564 388.12163966115804 0 0 0 0 0 0 0 1.274227503252014 0 PTS{I|L}AS{I|L} 3.0661 - 1478 + NaN NaN 246007.7 NaN 12164 3214 15370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15382 66.627 NaN 262350 35 0 13989 0.327 + -1 RMHQTFSSNL 10 72 618.7930251967659 1235.5714974603318 2 618.7923583984375 MULTI HCD FTMS 0 0 0 15381 127036.9921875 0.7905729362457514 1 -0.01941680908203125 1 Oxidation (M) _RM(Oxidation (M))HQTFSSNL_ REV__ENSG00000153896|ENST00000329285|ZNF599 20.41453444215458 0.3201613495159799 1 C(Carbamidomethyl (C)){M(Oxidation (M))|F}YN{I|L} 5 -1 39.034 0 0 3.1592 0 0 520.2620716779312 0 520.2620716779312 0 16.65258038143213 0 0 0 1.2614393726401687 0 0 0.28872548999643577 C(Carbamidomethyl (C)){M(Oxidation (M))|F}YN{I|L} 3.1592 - 472 NaN NaN 125164.6 NaN 12165 3215 15381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15383 66.631 NaN 370160 35 0 57509 0.261 + 5756 FPAGYMYPSM 10 74 590.2457738184258 1178.4769947036516 2 590.2461547851562 MULTI HCD FTMS 0 0 0 15381 132247.421875 0.607597063979768 47 -1.19384765625 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 1 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE] 8 7 + 45.583 0 0 3.868 3.868 81.502 0 0 0 33.989568978889935 3.3205533784473573 3.3205533784473573 3.6817660927503937 0 1.5 0 1.1989700043360187 0 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPSM;[WY][VS]{M(Oxidation (M))|F}YPSM;M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE];M{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{[DA]|[EG]}YPSM;M[AG][Y{I|L}]{M(Oxidation (M))|F}Y[WE];[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPSM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[CP]|[EA]}M;[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}Y[WE];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}[PS]YM 3.868;3.5556;3.3834;3.2557;3.1086;3.082;3.0603;2.8168;2.6189;2.3055 -;-;-;-;-;-;-;-;-;- 515 + NaN NaN 156786.7 NaN 12166 3215 15381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15384 66.635 NaN 179910 35 0 12188 0.261 + 8241 GSSGVVPATMD 11 52 510.7376515932701 1019.4607502533402 2 510.7380065917969 MULTI HCD FTMS 0 0 0 15381 56121.26171875 0.41668536384496274 -7 0.19271087646484375 3 Unmodified _GSSGVVPATMD_ REV__ENSG00000141314|ENST00000269051|RHBDL3;REV__nc|ENSG00000141314|P58872-2|RHBDL3;REV__nc|ENSG00000141314|P58872-3|RHBDL3 11.494710602746466 0.35692862141139436 1 VYA{I|L} 4 -1 32.467 0 0 3.1847 0 0 555.1907826154312 0 555.1907826154312 0 11.81994735550866 0 0 0 0.805462187404089 0 0 0 VYA{I|L} 3.1847 - 82 NaN NaN 108831.5 NaN 12167 3215 15381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15385 66.638 NaN 165630 35 0 26837 0.262 + -1 SAPFTMMMFF 10 57 419.8377563346446 1256.4914396041338 3 419.837646484375 MULTI HCD FTMS 0 0 0 15381 35509.5 0.38446282353504424 1 -0.01941680908203125 4 3 Oxidation (M) _SAPFTM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))FF_ REV__ENSG00000148842|ENST00000369878|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2 1.7422754331352037 0.46608156381052757 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 0.95422 0 0 1091.4129464174134 0 1091.4129464174134 0 0.9767302917421006 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.95422 + + 4 + NaN NaN 119580.5 NaN 12168 3215 15381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15386 66.641 NaN 327830 35 0 46737 0.261 + 1619 AYVVKVFSL 9 58 513.304961018381 1024.595369103562 2 513.3052368164062 MULTI HCD FTMS 0 0 0 15381 118008.921875 0.5746817061795146 -3 0.0850982666015625 5 Unmodified _AYVVKVFSL_ C3|p.A1089P|1|0.12|ENSG00000125730|chr19:6693049-6693049|C/G|missense_variant;ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF 45.69961567697781 0.039180348357221985 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVKV{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 9 0 + 65.837 0 0 6.4256 6.4256 86.703 0 0 0 61.857274781860525 4.762036441594191 4.762036441594191 6.465912507003608 0 2.3494850021680094 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVKV{M(Oxidation (M))|F}{[TV]|[{I|L}S]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVKVY[{I|L}A];{[MS]|[{M(Oxidation (M))|F}A]}[{I|L}T]KVY[{I|L}A];{[MS]|[{M(Oxidation (M))|F}A]}[{I|L}T]KV{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 6.4256;5.7946;1.7019;1.5468 +;-;-;- + 146 + NaN NaN 131013.9 NaN 12169 3215 15381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15388 66.646 NaN 7552400 35 0 946940 0.327 + 12745 KYDEIFYNL 9 117 602.7977747539607 1203.5809965747212 2 602.79833984375 MULTI HCD FTMS 0 0 0 15387 6037904.5 0.9276583293374359 -2 0.0555419921875 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 143.90916361153978 1.5265063399744E-05 1 {NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L} 10 4 + 89.216 0 0 7.4125 7.4125 86.166 0 0 0 4.790775890976519 16.53212513775344 4.790775890976519 1.104159301997015 0 2.6549471895720984 0 1.9188265215345564 0.7614393726401688 {NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{I|L}DY[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KEYN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L} 7.4125;7.3208;7.318;7.192;7.0145;6.9706;6.8817;6.7155;6.6881;6.6511 -;-;-;-;-;-;+;-;-;- + 29924 NaN NaN 654003.4 NaN 12170 3216 15387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15389 66.651 NaN 1523000 35 0 217190 0.261 + 12839 KYFEVPSVL 9 103 541.3000932676571 1080.585633602114 2 541.3007202148438 MULTI HCD FTMS 0 0 0 15387 660795.625 0.6032387324188763 2 -0.028961181640625 2 Unmodified _KYFEVPSVL_ ENSG00000131966|ENST00000254286|ACTR10 76.82478488871298 0.006879825292024087 1 EVPSV{I|L} 6 3 62.054 0 0 5.7426 0 0 438.2271162845458 0 438.2271162845458 0 19.144506377564554 0 0 0 2.079689690656103 0 1.035666875892183 0 + EVPSV{I|L} 5.7426 + + 1682 NaN NaN 307738 NaN 12171 3216 15387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15390 66.654 NaN 2873000 35 0 215460 0.261 + 11250 IYLLIHNNF 9 122 573.8186455363372 1145.6227381394742 2 573.8006591796875 MULTI HCD FTMS 0 0 0 15387 354175.1875 0.6187723967470243 2 -0.028961181640625 3 Unmodified _IYLLIHNNF_ ENSG00000143119|ENST00000271324|CD53;ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF 97.07464715276575 0.004340583992084827 1 {I|L}Y{I|L}{I|L}{I|L}HNGG{M(Oxidation (M))|F} 10 2 + 66.301 0 0 5.7874 5.7874 90.736 0 0 0 27.951170011779205 12.307131330965717 12.307131330965717 20.58114473761087 0 2.052887198244136 1.5228787452803376 0 0.6421590589602533 {I|L}Y{I|L}{I|L}{I|L}HNGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HNN{M(Oxidation (M))|F};{I|L}Y{I|L}S[KT][HV]W;[Y{I|L}]{I|L}{I|L}{I|L}HGGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HN]{I|L}{I|L}N{M(Oxidation (M))|F};[YR]SV{[TV]|[{I|L}S]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YR]SV{M(Oxidation (M))|F}{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F}[KT]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};RRGA[HK]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};RRQ[HK]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 5.7874;3.9909;3.7098;3.1871;2.2095;1.3076;1.0984;0.69133;0.63743;0.48844 -;+;-;-;-;-;-;-;-;- + 7938 + NaN NaN 528714.9 NaN 12172 3216 15387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15391 66.657 NaN 298390 35 0 22775 0.261 -1 0 61 604.7680411660131 1207.521529398826 2 605.7730712890625 MULTI HCD FTMS 0 0 0 15387 55334.0859375 0.07530823502212305 56 -1.4340896606445312 4 NaN NaN 1 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4 -1 33.188 0 0 2.7484 0 0 666.3040583599454 0 666.3040583599454 0 12.474250108400469 0 0 0 1.274227503252014 0 0.4247425010840047 0 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.7484 - 151 + NaN NaN 141412.1 NaN 12173 3216 15387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15392 66.661 NaN 222350 35 0 49258 0.264 -1 0 52 456.5784833434032 1366.7136206304097 3 456.57904052734375 MULTI HCD FTMS 0 0 0 15387 79237.0234375 0.0291920709594021 53 -1.3616256713867188 5 NaN NaN 1 {I|L}W 2 -1 23.711 0 0 1.7349 0 0 1049.541011324687 0 1049.541011324687 0 23.622731327798547 0 0 0 0.4247425010840047 0 0 0 {I|L}W 1.7349 - 24 NaN NaN 131833.9 NaN 12174 3216 15387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15394 66.666 NaN 567350 35 0 37440 0.327 -1 YTGMLNAVNLF 11 93 629.8088525076146 1257.603152082029 2 629.8096313476562 MULTI HCD FTMS 0 0 0 15393 133173.625 0.7198683763773436 -3 0.0749664306640625 1 Oxidation (M) _YTGM(Oxidation (M))LNAVNLF_ ENSG00000138075|ENST00000405322|ABCG5;nc|ENSG00000138075|Q9H222-2|ABCG5 29.84058131909904 0.20237991466741817 1 [YV][WY][HV]N{I|L} 8 -1 23.377 0 0 1.8589 0 0 0 180.0690042621051 180.0690042621051 3.9266750356873104 0 0 0 0 0 1.6989700043360187 0 0.2742275032520141 [YV][WY][HV]N{I|L} 1.8589 - 586 NaN NaN 176052.3 NaN 12175 3217 15393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15395 66.67 NaN 171600 35 0 23338 0.264 + -1 PTCHRLRKCF 10 60 439.8923253954964 NaN 0 439.53369140625 PEAK HCD FTMS 0 0 0 15393 42303.6796875 1 0 0 2 Carbamidomethyl (C) _PTC(Carbamidomethyl (C))HRLRKCF_ REV__ENST00000591658.5_1_17:40091560-40091933:+|nuORF 3.3196427980023873 0.3373431348853355 1 D 1 -1 5.4846 0 0 0.62483 0 0 551.6435242267366 208.07375513248283 759.7172793592194 0 0 0 0 0 0 0 0 0 D 0.62483 - 7 + NaN NaN 116294.1 NaN 12176 3217 15393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15397 66.675 NaN 3144400 35 0 548980 0.327 + 35571 YYIDKLEYL 9 103 610.3158445586632 1218.6171361841264 2 610.3161010742188 MULTI HCD FTMS 0 0 0 15396 2687351 1 0 0 1 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 152.88595553498965 5.775426743015152E-06 1 YY{I|L}DK{I|L}EY{I|L} 9 0 + 104.95 0 0 8.6125 8.6125 94.439 0 0 0 3.6925990375773807 3.6925990375773807 3.6925990375773807 13.726796160228915 0 3.079689690656103 2 2.0545970543767123 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DKE{I|L}Y{I|L};YY{I|L}DK{I|L}E{I|L}Y;YY{I|L}DK{I|L}YE{I|L};YY{I|L}DKEY{I|L}{I|L};YY{I|L}DKE{I|L}{I|L}Y;YY{I|L}EY{I|L}DK{I|L};YY{I|L}E{I|L}YDK{I|L};YY{I|L}DY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};YY{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L} 8.6125;7.4861;7.3491;7.1743;6.993;6.5257;6.0173;5.5809;5.4051;5.3304 +;-;-;-;-;-;-;-;-;- + 7771 + NaN NaN 561074.4 NaN 12177 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15398 66.679 NaN 2508500 35 0 139490 0.261 + 27181 SYNNFFRMF 9 118 621.2738121112648 1240.5330712893294 2 621.27392578125 MULTI HCD FTMS 0 0 0 15396 1843537.5 0.36473419509885163 20 -0.5522918701171875 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 108.1 0 0 8.7143 0 0 0 208.03675256900627 208.03675256900627 79.42838848394636 0 0 0 0 2.4604093769761874 2 1.2544321917401078 0.7614393726401688 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8.7143 - 7528 + NaN NaN 484802.6 NaN 12178 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15399 66.683 NaN 1398900 35 0 443930 0.263 -1 TAMDVVYAL 9 57 499.7466991268183 997.4788453204367 2 499.7469787597656 MULTI HCD FTMS 0 0 0 15396 740321.8125 0.8142521969581515 -5 0.1039886474609375 3 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 1 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2156302535675 0 533.2156302535675 0 21.12395659563255 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 125 NaN NaN 305862.9 NaN 12179 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15400 66.686 NaN 1469500 35 0 155570 0.261 + 34312 YPDTDVILM 9 87 541.7574008348665 1081.500248736533 2 541.7583618164062 MULTI HCD FTMS 0 0 0 15396 430803.4375 0.6359821799451307 11 -0.2966461181640625 4 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 50.855029805455786 0.030374663808198754 1 V{I|L}{I|L}{M(Oxidation (M))|F} 4 5 41.67 0 0 3.853 0 0 591.217088767775 0 591.217088767775 0 9.648123393101159 0 0 0 1.4247425010840047 0 0 0 + V{I|L}{I|L}{M(Oxidation (M))|F} 3.853 + + 1077 NaN NaN 312857 NaN 12180 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15401 66.689 NaN 915730 35 0 149050 0.261 + 19906 NYFIPSHYF 9 88 594.2814063066825 1186.5482596801648 2 595.3021240234375 MULTI HCD FTMS 0 0 0 15396 36553.203125 0.2052957664705535 -9 0.201934814453125 5 Unmodified _NYFIPSHYF_ ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH 25.399314129420986 0.14091189997036632 1 [YN]{M(Oxidation (M))|F}{I|L}[EP]YP 8 3 54.09 0 0 4.5586 0 0 0 160.01646025072833 160.01646025072833 14.038778228222753 0 0 0 0 1.1861818737241734 1.3979400086720375 0 0.7614393726401688 [YN]{M(Oxidation (M))|F}{I|L}[EP]YP 4.5586 - 3666 NaN NaN 220066.8 NaN 12181 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15402 66.693 NaN 308200 35 0 27982 0.261 + 24819 RYPQSIFSTF 10 82 623.3164157146421 1244.618278496084 2 624.3212280273438 MULTI HCD FTMS 0 0 0 15396 77713.625 0.6492581599275039 5 -0.1202239990234375 6 Unmodified _RYPQSIFSTF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 19.361941925380144 0.3300069447713393 1 TSP{I|L}Y[RP][{M(Oxidation (M))|F}T] 9 7 32.896 0 0 2.6431 0 0 164.0722086898723 0 164.0722086898723 0 21.742881055458845 0 0 0 0.3252574989159953 0 0.8807196863200843 0 TSP{I|L}Y[RP][{M(Oxidation (M))|F}T] 2.6431 - 716 + NaN NaN 142719.8 NaN 12182 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15403 66.696 NaN 143260 35 0 14118 0.261 -1 KYLGIINMF 9 56 557.8012789185116 1113.588004903823 2 557.8021850585938 MULTI HCD FTMS 0 0 0 15396 59189.75390625 1 0 0 7 Oxidation (M) _KYLGIINM(Oxidation (M))F_ ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;nc|ENSG00000111731|Q86YS7|C2CD5 37.97399986684836 0.07464525285885698 1 {I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 44.285 0 0 3.9767 0 0 574.3476628315123 0 574.3476628315123 0 37.29486901908295 0 0 0 1.3807196863200843 0 0 0.3054621874040891 {I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.9767 + + 76 + NaN NaN 109539.1 NaN 12183 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15404 66.699 NaN 260720 35 0 8974.8 0.261 -1 VYMDWYEKF 9 70 648.7841424681742 NaN 0 648.783935546875 PEAK HCD FTMS 0 0 0 15396 81361.8046875 0.8977568730787788 -1 0.0095367431640625 8 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 29.84058131909904 0.12134613108984595 1 KEY 3 -1 20.177 0 0 1.5574 0 0 165.0843238994358 707.2504930367573 872.3348169361932 0 0 0 0 0 1 0 0 0 KEY 1.5574 - 28 + NaN NaN 121648.1 NaN 12184 3218 15396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15406 66.704 NaN 350030 35 0 24799 0.327 -1 SSCRSLCCGDI 11 81 629.2532144590816 1256.4918759849631 2 629.2532958984375 MULTI HCD FTMS 0 0 0 15405 71462.3828125 0.5253613387133106 1 -0.01611328125 1 2 Carbamidomethyl (C) _SSCRSLC(Carbamidomethyl (C))C(Carbamidomethyl (C))GDI_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 4.189502756095605 0.4005469306127019 1 {M(Oxidation (M))|F}YN{I|L} 4 -1 22.396 0 0 1.7824 0 0 701.22465712715 0 701.22465712715 0 2.6548564655519833 0 0 0 0 0 0 0 {M(Oxidation (M))|F}YN{I|L} 1.7824 - 199 NaN NaN 153020.8 NaN 12185 3219 15405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15407 66.709 NaN 219900 35 0 38633 0.262 + 20687 PFLTFSIPK 9 55 525.3055609649631 NaN 0 525.2879028320312 PEAK HCD FTMS 0 0 0 15405 13971.892578125 0.28176214713703535 -3 0.0580596923828125 2 Unmodified _PFLTFSIPK_ REV__ENST00000552279.1_1_12:58150872-58151028:+|nuORF 11.640296217721598 0.23883959125015683 1 {I|L}M 2 -1 4.9485 0 0 0.47192 0 0 130.13918481879483 671.3114107721311 801.450595590926 0 0 0 0 0 0 0 0 0 {I|L}M 0.47192 - 13 + NaN NaN 121758.9 NaN 12186 3219 15405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15408 66.712 NaN 167930 35 0 17957 0.261 + 2360 DPEAFLVQI 9 61 516.273949896553 1030.5333468599058 2 516.2742309570312 MULTI HCD FTMS 0 0 0 15405 46285.125 0.26876524323441053 10 -0.267547607421875 3 Unmodified _DPEAFLVQI_ ENSG00000120334|ENST00000682279|CENPL 13.90604991867851 0.24021115267848145 1 VQ{I|L} 3 6 27.307 0 0 2.6498 0 0 672.309862205275 0 672.309862205275 0 12.35863111416478 0 0 0 0.5 0 0 0 + VQ{I|L} 2.6498 + + 50 NaN NaN 105694.4 NaN 12187 3219 15405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15409 66.715 NaN 119610 35 0 12811 0.261 + 10193 IFWEDEIN 8 58 533.2471496306799 NaN 0 533.2479858398438 PEAK HCD FTMS 0 0 0 15405 42883.39453125 0.6995074076816314 5 -0.11725616455078125 4 Unmodified _IFWEDEIN_ REV__ENSG00000122882|ENST00000372979|ECD;REV__nc|ENSG00000122882|O95905-2|ECD;REV__nc|ENSG00000122882|O95905-3|ECD 23.1484247019978 0.3827488267290106 1 {M(Oxidation (M))|F} 1 -1 11.237 0 0 1.0556 0 0 113.08323545999572 801.3025776644474 914.3858131244432 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.0556 + + 8 + NaN NaN 98671.9 NaN 12188 3219 15405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15411 66.72 NaN 7330200 35 0 1673700 0.327 + 5942 FPDPNVKYVF 10 113 613.3165422889869 1224.6185316447736 2 613.33203125 MULTI HCD FTMS 0 0 0 15410 882527.8125 0.6722251235746015 6 -0.16339874267578125 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 35.995811192298525 0.18015466441198996 1 QAS{I|L}A{M(Oxidation (M))|F} 6 9 50.878 0 0 4.1546 0 0 589.315721580275 0 589.315721580275 0 6.418306166134471 0 0 0 0 0 1.4247425010840047 0 QAS{I|L}A{M(Oxidation (M))|F} 4.1546 - 7608 NaN NaN 612033.8 NaN 12189 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15412 66.725 NaN 1252500 35 0 93793 0.261 + 20205 NYLHLDYNF 9 95 599.7801034295221 1197.5456539258441 2 599.7804565429688 MULTI HCD FTMS 0 0 0 15410 836521.25 0.7329386094080773 4 -0.10114288330078125 2 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 114.18643581695662 0.002258955990713129 1 [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F} 9 0 + 103.5 0 0 8.6428 8.6428 92.454 0 0 0 19.629843661361406 16.478174818886373 16.478174818886373 9.208187539523749 0 2.2302046884880937 1.5228787452803376 0.5387254899964358 1.1989700043360187 + + [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DYGG{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DNY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DGGY{M(Oxidation (M))|F};[YG]G{I|L}H{I|L}DYN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DNY{M(Oxidation (M))|F};[YG]G{I|L}H{I|L}DNY{M(Oxidation (M))|F};[YG]G{I|L}H{I|L}DYGG{M(Oxidation (M))|F} 8.6428;7.8739;7.2524;7.0036;6.4835;6.4005;6.2347;5.6133;5.302;5.2805 +;-;-;-;-;-;-;-;-;- + 5131 NaN NaN 278589.4 NaN 12190 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15413 66.728 NaN 2097100 35 0 428760 0.263 -1 0 97 467.2706223900158 1398.7900377702474 3 467.2708740234375 MULTI HCD FTMS 0 0 0 15410 594968.375 0.8661694359326743 2 -0.05223846435546875 3 NaN NaN 1 NY{I|L}PY{I|L} 6 -1 62.868 0 0 4.4945 0 0 0 632.3790233800875 632.3790233800875 46.837294113476204 0 0 0 0 0.9247425010840047 2 0 0 NY{I|L}PY{I|L} 4.4945 - 214 + NaN NaN 400120.8 NaN 12191 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15414 66.732 NaN 546780 35 0 50393 0.261 + 10045 IFDQSGTYL 9 78 522.2556636294779 1042.4967743257557 2 522.2560424804688 MULTI HCD FTMS 0 0 0 15410 258043.390625 0.5234702970733257 6 -0.16339874267578125 4 Unmodified _IFDQSGTYL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 93.93812099017352 0.0044227730261779084 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQSGTY{I|L} 9 0 + 88.893 0 0 8.5269 8.5269 89.904 0 0 0 4.762036441594191 81.44524706148886 4.762036441594191 5.382418650521359 0 2.6747425010840047 0 1.2302046884880937 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQSGTY{I|L};{I|L}{M(Oxidation (M))|F}DQSGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NESGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}QSGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[AG]SGTY{I|L};{I|L}{M(Oxidation (M))|F}D[AG]SGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGESGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}[AG]SGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}Q{I|L}SGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}[AG]{I|L}SGTY{I|L} 8.5269;8.0106;7.8307;7.8063;7.6436;7.1273;6.9474;6.923;6.6887;5.8054 +;+;-;-;-;-;-;-;-;- + 1232 NaN NaN 173662.7 NaN 12192 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15415 66.735 NaN 426190 35 0 36599 0.261 + 32825 WVDEMQVQL 9 82 582.2730897490377 1162.5316265648753 2 582.2737426757812 MULTI HCD FTMS 0 0 0 15410 199148.109375 0.5638083666813412 14 -0.3921661376953125 5 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 51.41523569358685 0.02959097413485123 1 {M(Oxidation (M))|F}QVQ{I|L} 5 4 56.058 0 0 4.822 0 0 529.2179432599625 0 529.2179432599625 0 46.136218907515314 0 0 0 1.6549471895720984 0 0 0.3054621874040891 + {M(Oxidation (M))|F}QVQ{I|L} 4.822 + + 197 NaN NaN 148391.1 NaN 12193 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15416 66.738 NaN 154920 35 0 43076 0.263 + -1 RIYPRMCIVF 10 31 452.24289115489535 1353.7068440648861 3 452.24273681640625 MULTI HCD FTMS 0 0 0 15410 33106.47265625 0.3732900092211949 5 -0.140594482421875 6 Carbamidomethyl (C) _RIYPRMC(Carbamidomethyl (C))IVF_ REV__ENSG00000171509|ENST00000307765|RXFP1;REV__nc|ENSG00000171509|Q9HBX9-2|RXFP1;REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1;REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1 1.7422754331352037 0.46608156381052757 1 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9184 0 0 1089.5610588307065 0 1089.5610588307065 0 20.48455006504028 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.9184 + + 4 NaN NaN 117322.2 NaN 12194 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15417 66.742 NaN 204940 35 0 14307 0.261 + 8445 GYYNGKWEFL 10 58 638.8030390663009 1275.5915251994018 2 638.8032836914062 MULTI HCD FTMS 0 0 0 15410 77699.84375 0.6509013951383741 -2 0.0452117919921875 7 Unmodified _GYYNGKWEFL_ ENSG00000144843|ENST00000357003|ADPRH 38.61474834105838 0.1574278268413918 1 [YG]YNG 5 5 41.708 0 0 3.2697 0 0 0 718.3573702447874 718.3573702447874 5.192868669034283 0 0 0 0 0.75 1.6989700043360187 0 0 + [YG]YNG 3.2697 + + 84 + NaN NaN 123801.2 NaN 12195 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15418 66.745 NaN 184570 35 0 11348 0.261 + -1 YVIMYNEAV 9 60 559.2657119335064 NaN 0 559.2647705078125 PEAK HCD FTMS 0 0 0 15410 14129.021484375 0.2590599702108532 1 -0.03278350830078125 8 Oxidation (M) _YVIM(Oxidation (M))YNEAV_ REV__ENSG00000140299|ENST00000607373|BNIP2;REV__nc|ENSG00000140299|Q12982-2|BNIP2 7.910154910731844 0.25691533546754686 1 T 1 -1 7.3464 0 0 0.65797 0 0 132.09831377850156 880.3458696059909 1012.4441833844924 0 0 0 0 0 0 0 0.2742275032520141 0 T 0.65797 - 19 + NaN NaN 123119.3 NaN 12196 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15419 66.748 NaN 309130 35 0 41682 0.263 -1 FYMIRFHSF 9 68 421.87266751335676 1262.5961731402704 3 421.87298583984375 MULTI HCD FTMS 0 0 0 15410 42520.33984375 0.8921204681490364 -3 0.05474853515625 9 Oxidation (M) _FYM(Oxidation (M))IRFHSF_ ENSG00000100253|ENST00000216075|MIOX 7.101721422024254 0.29718071671418667 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.6224 0 0 1097.517176413511 0 1097.517176413511 0 13.494850021680094 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 1.6224 + + 11 + NaN NaN 146990 NaN 12197 3220 15410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15421 66.753 NaN 806450 35 0 64361 0.327 + 2802 DYILNVMKF 9 80 579.796843480503 1157.5791340278058 2 579.7969970703125 MULTI HCD FTMS 0 0 0 15420 326231.09375 0.7476884416567959 1 -0.0194549560546875 1 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 103.41943736471063 0.004016698775839292 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 113.68 0 0 9.8207 9.8207 96.241 0 0 0 17.552725051033065 16.478174818886373 16.478174818886373 16.510234424404686 0 3.2302046884880937 2 0.5242275032520141 1.055462187404089 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[HG]|PP}V{M(Oxidation (M))|F}VN{I|L}[EP]{M(Oxidation (M))|F};{[HG]|PP}V{M(Oxidation (M))|F}VGG{I|L}[EP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[HG]|PP}V{M(Oxidation (M))|F}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VN{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VGG{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F} 9.8207;8.3944;8.3044;6.8781;6.4324;5.0099;4.2738;2.3533;1.7396;0.94409 +;-;-;-;-;-;-;-;-;- + 931 NaN NaN 219208.3 NaN 12198 3221 15420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15422 66.757 NaN 1216700 35 0 156300 0.261 + 33571 YILRQEEKF 9 101 613.3320516954759 1224.6495504577517 2 615.3191528320312 MULTI HCD FTMS 0 0 0 15420 64298.171875 0.733517686465927 3 -0.068359375 2 Unmodified _YILRQEEKF_ REV__ENSG00000164221|ENST00000379611|CCDC112;REV__nc|ENSG00000164221|Q8NEF3|CCDC112 15.847184025352803 0.2234401846867398 1 [Y{I|L}]R{I|L}Q{M(Oxidation (M))|F}NE 8 -1 42.912 0 0 3.5041 0 0 0 158.08408837679931 158.08408837679931 18.992070597046684 0 0 0 0 0 1.6989700043360187 0 0.9291746928241127 [Y{I|L}]R{I|L}Q{M(Oxidation (M))|F}NE 3.5041 - 1135 NaN NaN 272023 NaN 12199 3221 15420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15423 66.761 NaN 330160 35 0 58632 0.262 + -1 MLRRDMIV 8 70 525.2845566523886 1048.554560371577 2 525.7845458984375 MULTI HCD FTMS 0 0 0 15420 81834.8984375 0.6449773574668145 7 -0.1891632080078125 3 Oxidation (M) _MLRRDM(Oxidation (M))IV_ REV__ENSG00000112893|ENST00000261483|MAN2A1 13.50788311687929 0.4944073034352369 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R{M(Oxidation (M))|F}VW[TP] 8 -1 + 31.592 0 0 3.0129 3.0129 80.377 0 0 0 10.789719040763046 -1.249387366082999 -1.249387366082999 2.998037644757048 0 0.4247425010840047 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R{M(Oxidation (M))|F}VW[TP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R{M(Oxidation (M))|F}V[KQ]Q;{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VWVV 3.0129;2.727;0.18269 -;-;- 158 NaN NaN 125992.3 NaN 12200 3221 15420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15424 66.764 NaN 325140 35 0 30117 0.261 + 18725 MYTKLFVGF 9 76 561.2884455837101 1120.56233823422 2 561.2879638671875 MULTI HCD FTMS 0 0 0 15420 128334.8984375 0.2756879028571816 -10 0.2276458740234375 4 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 78.7280429016045 0.006263961847259105 1 [Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 63.913 0 0 5.7037 5.7037 90.129 0 0 0 7.147642715192504 46.923531510030365 7.147642715192504 17.028937514676485 0 2.06295299324845 0 1.0941876774005248 0 + + [Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}GV{M(Oxidation (M))|F} 5.7037;4.184 +;- + 535 NaN NaN 147317.8 NaN 12201 3221 15420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15425 66.768 NaN 121500 35 0 16079 0.263 + 2150 DGTLPDRFIHF 11 46 439.8923253954964 NaN 0 439.892333984375 PEAK HCD FTMS 0 0 0 15420 8616.734375 0.2036875855398956 3 -0.068359375 5 Unmodified _DGTLPDRFIHF_ REV__ENSG00000100170|ENST00000266088|SLC5A1;REV__nc|ENSG00000100170|P13866-2|SLC5A1 2.4347853303010236 0.3352133586680373 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108076.1 NaN 12202 3221 15420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15427 66.773 NaN 5853900 35 0 389150 0.327 + 24935 RYSVFFQSL 9 119 573.7982647685991 1145.581976603998 2 573.799072265625 MULTI HCD FTMS 0 0 0 15426 3226454 1 0 0 1 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 79.42699986076722 0.0060377907040421955 1 STSV{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 10 8 78.268 0 0 6.8321 0 0 131.08948947133757 0 131.08948947133757 0 29.678957730785477 0 0 0 3.173877368056628 0 0.9361818737241734 0 STSV{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 6.8321 - 11121 + NaN NaN 592335.2 NaN 12203 3222 15426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15428 66.777 NaN 788280 35 0 59739 0.261 + 2803 DYILNVMKF 9 85 579.796843480503 1157.5791340278058 2 579.796875 MULTI HCD FTMS 0 0 0 15426 270277.78125 0.6194491480083477 2 -0.0489044189453125 2 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 86.33184430468982 0.004622086694044132 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 101.61 0 0 8.7777 8.7777 93.583 0 0 0 12.71652514092061 14.973024840566467 12.71652514092061 9.75772496747986 0 2.805462187404089 2 0.5994850021680094 0.6747425010840047 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[HG]|PP}V{M(Oxidation (M))|F}VN{I|L}[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GRE[RH];{[HG]|PP}V{M(Oxidation (M))|F}VGG{I|L}[EP]{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{[SA]|[TG]}{[DS]|[MA]|[CV]|TT}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}P[EP][QP]S;[Y{I|L}]D{I|L}[TA]{[MG]|[TS]}K{M(Oxidation (M))|F} 8.7777;7.9348;7.6792;6.8362;5.5845;5.3799;4.7453;4.5041;4.286;4.2441 +;-;-;-;-;-;-;-;-;- + 1288 NaN NaN 203758.5 NaN 12204 3222 15426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15429 66.78 NaN 290980 35 0 49629 0.261 + -1 IMRYSLFY 8 70 554.7789797521784 1107.5434065711568 2 554.7792358398438 MULTI HCD FTMS 0 0 0 15426 165154.921875 0.6382582306083574 4 -0.1111602783203125 3 Oxidation (M) _IM(Oxidation (M))RYSLFY_ REV__ENSG00000260230|ENST00000561981|FRRS1L 28.486842064014134 0.3788298654084067 1 SYGD{I|L}{I|L} 6 -1 54.858 0 0 4.9531 0 0 441.2225923248612 0 441.2225923248612 0 42.86806291892539 0 0 0 1.8494850021680094 0 0.4247425010840047 0 SYGD{I|L}{I|L} 4.9531 - 185 NaN NaN 143219.3 NaN 12205 3222 15426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15430 66.784 NaN 648520 35 0 54905 0.261 + 22425 QPYSQEWEL 9 89 590.2691938318918 1178.5238347305835 2 590.2698974609375 MULTI HCD FTMS 0 0 0 15426 211499.203125 0.6692067052628737 -2 0.05223846435546875 4 Unmodified _QPYSQEWEL_ ENSG00000103061|ENST00000263997|SLC7A6OS 36.12702656103203 0.08312389501731911 1 WE{I|L} 3 6 38.5 0 0 3.2668 0 0 732.3075335680913 0 732.3075335680913 0 5.56347730353643 0 0 0 0.805462187404089 0 0.4247425010840047 0 + WE{I|L} 3.2668 + + 1981 NaN NaN 181496.4 NaN 12206 3222 15426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15431 66.787 NaN 239170 35 0 34048 0.262 + 1620 AYVVKVFSL 9 49 513.304961018381 1024.595369103562 2 513.3052978515625 MULTI HCD FTMS 0 0 0 15426 88991.9375 0.4333743387037509 4 -0.1111602783203125 5 Unmodified _AYVVKVFSL_ C3|p.A1089P|1|0.12|ENSG00000125730|chr19:6693049-6693049|C/G|missense_variant;ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF 55.50274090549119 0.023872834264864425 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVKV{M(Oxidation (M))|F}S{I|L} 9 0 + 83.822 0 0 8.181 8.181 97.258 0 0 0 12.285925394747395 12.285925394747395 12.285925394747395 83.82245020145518 0 2.5228787452803374 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVKV{M(Oxidation (M))|F}S{I|L} 8.181 + + 119 NaN NaN 118128.2 NaN 12207 3222 15426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15432 66.79 NaN 481110 35 0 104840 0.262 + 7658 FYIWRPLRI 9 56 421.91650847376906 1262.7276960215072 3 421.9169616699219 MULTI HCD FTMS 0 0 0 15426 69780.2890625 0.3948660779019785 -2 0.05223846435546875 6 Unmodified _FYIWRPLRI_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 7.608950283845883 0.29333554423920943 1 YE 2 8 25.217 0 0 1.997 0 0 952.5964923160697 0 952.5964923160697 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 YE 1.997 - 10 NaN NaN 152342.9 NaN 12208 3222 15426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15434 66.795 NaN 4053600 35 0 474620 0.326 + 12746 KYDEIFYNL 9 120 602.7977747539607 1203.5809965747212 2 602.7981567382812 MULTI HCD FTMS 0 0 0 15433 3152195.5 0.4843005402412349 5 -0.14693450927734375 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 143.90916361153978 1.5265063399744E-05 1 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L} 9 4 + 86.281 0 0 7.1687 7.1687 85.349 0 0 0 0.42416500171179905 4.145789989604708 0.42416500171179905 0.42416500171179905 0 1.8807196863200843 0 1.7357280815788143 0.805462187404089 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}K{I|L}E{M(Oxidation (M))|F}YN{I|L} 7.1687;7.1334;7.0979;7.0955;7.0565;6.9622;6.4562;6.4036;6.3684;6.366 -;-;-;-;+;-;-;-;-;- + 29658 NaN NaN 609985.9 NaN 12209 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15435 66.8 NaN 1718500 35 0 351470 0.261 + 13991 KYSPFVVSF 9 83 537.2870220359804 1072.5594911387607 2 537.2874145507812 MULTI HCD FTMS 0 0 0 15433 779301.375 0.23683176457511482 -5 0.1202239990234375 2 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 125.52916310638031 0.0008761121089336018 1 [YK]SP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F} 9 0 + 83.655 0 0 7.7996 7.7996 95.022 0 0 0 60.35457533920862 16.478174818886373 16.478174818886373 30.07638152291939 0 2.8494850021680094 0 1.3098943791441968 0 + + [YK]SP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}VVVVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]N[YV]VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]GG[YV]VVS{M(Oxidation (M))|F};[YK]SP{M(Oxidation (M))|F}VG[Y{I|L}] 7.7996;4.9954;4.6335;3.775;3.4981 +;-;-;-;- + 869 + NaN NaN 346162.3 NaN 12210 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15436 66.803 NaN 512940 35 0 73807 0.261 + 19907 NYFIPSHYF 9 75 594.2814063066825 1186.5482596801648 2 594.2799072265625 MULTI HCD FTMS 0 0 0 15433 107628.4921875 0.36046943969334716 4 -0.12410736083984375 3 Unmodified _NYFIPSHYF_ ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH 39.957323273324995 0.06554068735427583 1 YN{M(Oxidation (M))|F}GGKE 7 8 67.542 0 0 5.6923 0 0 0 388.1513765924438 388.1513765924438 46.541841734059446 0 0 0 0 1.7614393726401687 1.6989700043360187 0.3252574989159953 0 YN{M(Oxidation (M))|F}GGKE 5.6923 - 1775 + NaN NaN 164235.4 NaN 12211 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15437 66.807 NaN 564160 35 0 76461 0.261 -1 YNALNPMHKE 10 79 616.7903330166926 1231.566113100185 2 616.79052734375 MULTI HCD FTMS 0 0 0 15433 120819.453125 0.1753169921543586 17 -0.48107147216796875 4 Oxidation (M) _YNALNPM(Oxidation (M))HKE_ ENSG00000213160|ENST00000392647|KLHL23 22.736283301280096 0.29844449404982915 1 [YN]A 3 -1 44.507 0 0 3.6139 0 0 0 880.3996940731159 880.3996940731159 29.030899869919438 0 0 0 0 1 1.6989700043360187 0 0.7059771852360797 [YN]A 3.6139 + + 136 NaN NaN 177408.5 NaN 12212 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15438 66.81 NaN 200990 35 0 50892 0.264 + -1 GFIICWLIMAK 11 46 456.5784833434032 1366.7136206304097 3 456.9132995605469 MULTI HCD FTMS 0 0 0 15433 57601.94140625 0.026995590004821317 60 -1.5994644165039062 5 Carbamidomethyl (C),Oxidation (M) _GFIIC(Carbamidomethyl (C))WLIM(Oxidation (M))AK_ REV__ENST00000475912.1_1_2:37509613-37518050:-|nuORF 2.843284757254958 0.4064509854383032 1 W 1 -1 21.99 0 0 1.6089 0 0 1162.623607057947 0 1162.623607057947 0 8.494850021680094 0 0 0 0.5 0 0 0 W 1.6089 + + 15 + NaN NaN 108560.6 NaN 12213 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15439 66.813 NaN 205190 35 0 18101 0.261 -1 EWCLPDMEL 9 57 596.7564758258204 1191.4983987184407 2 597.2605590820312 MULTI HCD FTMS 0 0 0 15433 37804.49609375 0.7567884731101403 1 -0.02613067626953125 6 Carbamidomethyl (C) _EWC(Carbamidomethyl (C))LPDMEL_ ENSG00000233436|ENST00000422652|BTBD18 7.289230182591677 0.29575926068275815 1 EW 2 -1 13.711 0 0 1.1508 0 0 130.091541549665 743.2688692682249 873.3604108178899 0 0 0 0 0 0 0 0.4247425010840047 0 EW 1.1508 + + 19 + NaN NaN 115684 NaN 12214 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15440 66.817 NaN 265730 35 0 20621 0.261 -1 0 66 604.7680411660131 1207.521529398826 2 605.7717895507812 MULTI HCD FTMS 0 0 0 15433 53138.86328125 0.07232059474720297 63 -1.683685302734375 7 NaN NaN 1 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4 -1 33.188 0 0 2.7484 0 0 666.3044031835632 0 666.3044031835632 0 16.989700043360184 0 0 0 1.274227503252014 0 0.4247425010840047 0 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.7484 - 64 + NaN NaN 125371 NaN 12215 3223 15433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15442 66.821 NaN 1481200 35 0 248950 0.326 + 35572 YYIDKLEYL 9 99 610.3158445586632 1218.6171361841264 2 610.3161010742188 MULTI HCD FTMS 0 0 0 15441 1012398 0.37672711901050515 6 -0.1830902099609375 1 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 117.76058876431921 0.001675465467887476 1 YY{I|L}DK{I|L}EY{I|L} 9 0 + 100.33 0 0 8.2328 8.2328 93.179 0 0 0 0.20500595037441371 0.20500595037441371 0.20500595037441371 11.276362525516532 0 2.5356668758921828 2 0.9386218330464625 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK{I|L}E{I|L}Y;YY{I|L}DK{I|L}YE{I|L};[Y{I|L}]YDK{I|L}EY{I|L};Y{I|L}YDK{I|L}EY{I|L};YY{I|L}DK[YE]{I|L}{I|L};[Y{I|L}]YDK{I|L}E{I|L}Y;[Y{I|L}]YDK{I|L}YE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}EY{I|L};[Y{I|L}]YDK[YE]{I|L}{I|L} 8.2328;7.3075;7.0976;6.7505;6.47;6.369;5.8252;5.6153;5.2198;4.8867 +;-;-;-;-;-;-;-;-;- + 2697 NaN NaN 318921.8 NaN 12216 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15443 66.826 NaN 1913700 35 0 110050 0.261 + 27182 SYNNFFRMF 9 119 621.2738121112648 1240.5330712893294 2 621.2740478515625 MULTI HCD FTMS 0 0 0 15441 1177571 0.23297622687726713 26 -0.7112274169921875 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 179.17365725063826 1.1335045685127237E-12 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 106.81 0 0 8.6098 8.6098 92.411 0 0 0 78.94138788323808 2.0007370874089503 2.0007370874089503 9.208187539523749 0 2.809894379144197 2 0 1.0114393726401687 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GSN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.6098;7.8675;7.8675;7.8363;7.6489;7.1287;7.094;6.9067;6.8478;6.2389 +;-;-;+;-;-;-;-;-;- + 6954 + NaN NaN 374582.7 NaN 12217 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15444 66.829 NaN 1613500 35 0 506540 0.263 -1 TAMDVVYAL 9 58 499.7466991268183 997.4788453204367 2 499.7469177246094 MULTI HCD FTMS 0 0 0 15441 804915.875 0.8852967838027099 1 -0.03945159912109375 3 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 1 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2153900100609 0 533.2153900100609 0 20.243500300354142 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 116 NaN NaN 337320 NaN 12218 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15445 66.833 NaN 904950 35 0 70542 0.261 + 34313 YPDTDVILM 9 95 541.7574008348665 1081.500248736533 2 541.7581176757812 MULTI HCD FTMS 0 0 0 15441 280990.96875 0.41481853043598127 17 -0.4744415283203125 4 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 60.38955033654506 0.017036522530421875 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ES]|[DT]|[{I|L}C]}V{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 63.698 0 0 5.8898 5.8898 90.177 0 0 0 20.87128018967597 38.622113237004626 20.87128018967597 15.6687674038008 0 1.4247425010840047 1.5228787452803376 0.6139829889124311 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ES]|[DT]|[{I|L}C]}V{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ES]|[DT]|[{I|L}C]}V{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}VV{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}VV{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}{I|L}{I|L}[MT] 5.8898;4.441;4.1572;2.7084;0.45328 +;-;-;-;- + 709 NaN NaN 238843.3 NaN 12219 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15446 66.836 NaN 391920 35 0 56576 0.261 -1 0 66 615.4038311667025 614.3965547001025 1 616.4071655273438 MULTI HCD FTMS 0 0 0 15441 108669.84375 0.6448528929077281 -31 0.789093017578125 5 NaN NaN 1 [YN]A 3 -1 29.437 0 0 4.7912 0 0 0 263.23023935269936 263.23023935269936 24.83288122256525 0 0 0 0 0 2 0 0.3494850021680094 [YN]A 4.7912 - 46 NaN NaN 147860.3 NaN 12220 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15447 66.839 NaN 292820 35 0 14214 0.261 + 9920 IDFQNFTNIF 10 84 629.8088525076146 1257.603152082029 2 629.8089599609375 MULTI HCD FTMS 0 0 0 15441 95407.34375 0.5157232120082906 4 -0.1208038330078125 6 Unmodified _IDFQNFTNIF_ tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1 27.223235318498237 0.2564750587861972 1 C{I|L}YH{I|L} 5 9 33.188 0 0 2.639 0 0 610.3168202130875 0 610.3168202130875 0 16.365006360318684 0 0 0 0 0 0 0 C{I|L}YH{I|L} 2.639 - 195 NaN NaN 132863 NaN 12221 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15448 66.843 NaN 169730 35 0 23270 0.263 + 19086 NETPLPPVL 9 37 490.27631766666815 978.5380824001363 2 490.2770690917969 MULTI HCD FTMS 0 0 0 15441 31216.7109375 0.27966367895984073 1 -0.03945159912109375 7 Unmodified _NETPLPPVL_ REV__METTL1|p.V244Efs*100|1|0.25|ENSG00000037897|chr12:57769077-57769096|CTTCCCTCCATTACGTAGAA/-|frameshift_variant 21.74664581756881 0.17247014374749275 1 E 1 -1 7.4743 0 0 0.76382 0 0 522.2814428511114 324.1926609247594 846.4741037758708 0 0 0 0 0 0.5 0 0 0 E 0.76382 + + 2 + NaN NaN 122093.9 NaN 12222 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15449 66.846 NaN 150560 35 0 11135 0.261 + 12957 KYIDYLMTW 9 62 624.8032220894784 1247.5918912457566 2 624.8035278320312 MULTI HCD FTMS 0 0 0 15441 76179.921875 0.895136762908643 1 -0.03945159912109375 8 Oxidation (M) _KYIDYLM(Oxidation (M))TW_ ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF;nc|ENSG00000114978|Q9H8S9-2|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B 51.41523569358685 0.02959097413485123 1 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}TW 9 2 + 91.693 0 0 7.3496 7.3496 93.842 0 0 0 22.632192780232785 58.50501891384965 22.632192780232785 23.750612633917 0 2.309894379144197 1.6989700043360187 0 0 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}TW;[Y{I|L}]KDY{I|L}{[WT]|[RM]}{M(Oxidation (M))|F};[Y{I|L}]KDY[CS]P{I|L}{M(Oxidation (M))|F};[Y{I|L}]V[SG]Y{I|L}{M(Oxidation (M))|F}TW;[Y{I|L}]KDY[CS][QT]K;[Y{I|L}]V[CS]Y[{I|L}T]TW 7.3496;5.4459;4.6214;4.1147;3.5234;2.8823 -;-;-;-;-;- 196 NaN NaN 109042 NaN 12223 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15450 66.849 NaN 163650 35 0 7938.1 0.261 + 29182 TYITDAYYNI 10 68 618.7930251967659 1235.5714974603318 2 618.791259765625 MULTI HCD FTMS 0 0 0 15441 52102.8046875 0.32424466747165975 10 -0.29102325439453125 9 Unmodified _TYITDAYYNI_ REV__ENSG00000197241|ENST00000400906|SLC2A7 11.494710602746466 0.4035943721457025 1 {M(Oxidation (M))|F}YN{I|L} 4 -1 26.389 0 0 2.1357 0 0 680.2889271466812 0 680.2889271466812 0 6.946603393793108 0 0 0 0.5866968715561641 0 0 0 {M(Oxidation (M))|F}YN{I|L} 2.1357 - 90 NaN NaN 112542.8 NaN 12224 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15451 66.853 NaN 157080 35 0 12858 0.263 + 8242 GSSGVVPATMD 11 52 510.7376515932701 1019.4607502533402 2 510.7388916015625 MULTI HCD FTMS 0 0 0 15441 102368.3203125 0.7600574094249324 2 -0.062255859375 10 Unmodified _GSSGVVPATMD_ REV__ENSG00000141314|ENST00000269051|RHBDL3;REV__nc|ENSG00000141314|P58872-2|RHBDL3;REV__nc|ENSG00000141314|P58872-3|RHBDL3 16.149105407346934 0.31637472687818013 1 YA{I|L} 3 -1 32.435 0 0 3.1816 0 0 654.2666805750152 0 654.2666805750152 0 -1.254471812167779 -1.254471812167779 0 0 0.9247425010840047 0 0 0 YA{I|L} 3.1816 - 70 NaN NaN 118732 NaN 12225 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15452 66.856 NaN 200970 35 0 46770 0.261 -1 0 48 456.5784833434032 1366.7136206304097 3 456.9141845703125 MULTI HCD FTMS 0 0 0 15441 30458.3046875 0.01427451723869261 61 -1.6401748657226562 11 NaN NaN 1 W 1 -1 21.99 0 0 1.6089 0 0 1162.623835939783 0 1162.623835939783 0 10.206963425791127 0 0 0 0.5 0 0 0 W 1.6089 - 34 + NaN NaN 103486 NaN 12226 3224 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15454 66.861 NaN 675520 35 0 102390 0.327 + 19908 NYFIPSHYF 9 78 594.2814063066825 1186.5482596801648 2 595.3019409179688 MULTI HCD FTMS 0 0 0 15453 159707.234375 0.8969725301442499 -2 0.065582275390625 1 Unmodified _NYFIPSHYF_ ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH 25.399314129420986 0.14091189997036632 1 YN{M(Oxidation (M))|F}{I|L}QMGA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 10 7 + 64.241 0 0 5.4141 5.4141 82.541 0 0 0 2.292170286773171 1.042782920690172 1.042782920690172 1.042782920690172 0 1.8371804965004639 1.5228787452803376 0.3807196863200844 0 YN{M(Oxidation (M))|F}{I|L}QMGA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YPY{I|L}EP{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YN{M(Oxidation (M))|F}{I|L}QMQ{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YN{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YN{M(Oxidation (M))|F}{I|L}[AG]MGA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YN{M(Oxidation (M))|F}{I|L}QP{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YPY[EP]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YN{M(Oxidation (M))|F}{I|L}QMGV{[ES]|[DT]|[{I|L}C]};YN{M(Oxidation (M))|F}{I|L}[AG]MQ{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YYP{I|L}EP{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.4141;5.3262;5.2657;4.6513;4.6417;4.637;4.6113;4.5817;4.4896;4.4426 -;-;-;-;-;-;-;-;-;- 1652 + NaN NaN 189101.6 NaN 12227 3225 15453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15455 66.865 NaN 710370 35 0 71706 0.261 + 3420 EFFKEEQF 8 91 552.2565413390744 NaN 0 552.2391357421875 PEAK HCD FTMS 0 0 0 15453 20059.59765625 0.38846587186063797 -1 0.03945159912109375 2 Unmodified _EFFKEEQF_ ENSG00000162971|ENST00000354611|TYW5;ENST00000441832.1_1_2:200800752-200808538:-|nuORF;ENST00000452512.6_1_2:200797792-200820219:-|nuORF 20.453626601364224 0.3843868670602312 1 QS[QT]{I|L}SQ 7 7 43.654 0 0 3.9596 0 0 165.08066734327969 162.02305017642814 327.10371751970786 0 0 0 0 0 0.3807196863200844 0 1.201163485412895 0.6109243748081782 QS[QT]{I|L}SQ 3.9596 - 635 + NaN NaN 186785.1 NaN 12228 3225 15453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15456 66.869 NaN 318440 35 0 21981 0.261 + 24820 RYPQSIFSTF 10 75 623.3164157146421 1244.618278496084 2 623.31640625 MULTI HCD FTMS 0 0 0 15453 73014.0234375 0.18684353923412542 12 -0.3403167724609375 3 Unmodified _RYPQSIFSTF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 42.312485326615175 0.12533928745458864 1 [YN]{I|L}[R{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}A{I|L}{M(Oxidation (M))|F} 10 8 + 56.731 0 0 4.5581 4.5581 81.076 0 0 0 12.758396522653683 19.203351290080747 12.758396522653683 0.9948500216800937 0 0.3807196863200844 1.5228787452803376 0.805462187404089 0.5994850021680094 [YN]{I|L}[R{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}A{I|L}{M(Oxidation (M))|F};[YN]{I|L}[R{M(Oxidation (M))|F}][TP]ST{M(Oxidation (M))|F};[YN]AQQ[YK]A{I|L}{M(Oxidation (M))|F};[YR]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[DS]|[MA]|[CV]|TT}A{I|L}{M(Oxidation (M))|F};[YR]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[TP]ST{M(Oxidation (M))|F};[YR][QP]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP][RK]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F};{[YC]|[HE]}[{I|L}T][KP]WST{M(Oxidation (M))|F};[YR][MT][R{M(Oxidation (M))|F}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.5581;4.4781;3.4635;2.8528;2.7729;2.613;2.3418;1.1125;0.5703 -;-;-;-;-;+;-;-;- + 1087 NaN NaN 148818.5 NaN 12229 3225 15453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15457 66.872 NaN 237970 35 0 35967 0.261 -1 AGGGAGDP 8 63 643.2681517421674 642.2608752755674 1 643.2692260742188 MULTI HCD FTMS 0 0 0 15453 68127.7265625 0.5404917819716141 -2 0.065582275390625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGGGAGDP_ ENSG00000107338|ENST00000377707|SHB;ENSG00000118508|ENST00000367495|RAB32;nc|ENSG00000107338|Q15464-2|SHB;RAB32|p.H47Tfs*45|1|0.35|ENSG00000118508|chr6:146544009-146544009|C/-|frameshift_variant 0.6903765706972694 0.5409681170271811 1 [YV]{M(Oxidation (M))|F} 3 -1 21.427 0 0 3.3361 0 0 0 230.07124449847677 230.07124449847677 17.931825014007217 0 0 0 0 0 1.6989700043360187 0 0 [YV]{M(Oxidation (M))|F} 3.3361 - 15 NaN NaN 128363.5 NaN 12230 3225 15453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15458 66.876 NaN 200260 35 0 28899 0.263 -1 MMDMCFII 8 52 526.2023987734166 1050.390244613633 2 526.2030639648438 MULTI HCD FTMS 0 0 0 15453 30571.939453125 0.49459375734054417 -6 0.156707763671875 5 3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))DM(Oxidation (M))CFII_ ENSG00000174429|ENST00000311955|ABRA 2.577480529830294 0.5381683276125971 1 W 1 -1 6.7217 0 0 0.63992 0 0 400.0424795763268 461.2396639459594 861.2821435222862 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.63992 - 33 + NaN NaN 102894.3 NaN 12231 3225 15453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15459 66.879 NaN 145160 35 0 7293.7 0.261 + 6098 FPEGALIRL 9 61 508.30024819784444 NaN 0 508.3006286621094 PEAK HCD FTMS 0 0 0 15453 30490.580078125 0.760442855152647 1 -0.02280426025390625 6 Unmodified _FPEGALIRL_ ENSG00000197948|ENST00000435817|FCHSD1;ENST00000522126.5_1_5:141021104-141024617:-|nuORF;nc|ENSG00000197948|Q86WN1-2|FCHSD1 18.1463463914782 0.1998403495282098 1 PE 2 7 13.583 0 0 1.3388 0 0 147.06760244716787 638.4011324518186 785.4687348989864 0 0 0 0 0 0.5 0 0 0 + PE 1.3388 + + 16 + NaN NaN 106335.9 NaN 12232 3225 15453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15461 66.884 NaN 2924300 35 0 605520 0.327 + 5943 FPDPNVKYVF 10 113 613.3165422889869 1224.6185316447736 2 613.3324584960938 MULTI HCD FTMS 0 0 0 15460 544050.6875 0.41440568269403344 12 -0.34368133544921875 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 66.54955139489424 0.02167381291790446 1 {I|L}D[RP]AS{I|L}A{M(Oxidation (M))|F} 9 7 48.638 0 0 3.9717 0 0 236.11624343086095 0 236.11624343086095 0 -8.130813544524635 -8.130813544524635 0 0 0 0 2.004432191740108 0 {I|L}D[RP]AS{I|L}A{M(Oxidation (M))|F} 3.9717 - 4747 NaN NaN 517946.7 NaN 12233 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15462 66.888 NaN 2866500 35 0 205960 0.237 + 24936 RYSVFFQSL 9 120 573.7982647685991 1145.581976603998 2 573.7973022460938 MULTI HCD FTMS 0 0 0 15460 1469535.125 0.45546445881453756 4 -0.1208343505859375 2 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 88.36371040165146 0.004568843997105255 1 [Y{I|L}]KTAEA{M(Oxidation (M))|F}G 9 8 77.726 0 0 6.7849 0 0 0 162.06130317459636 162.06130317459636 10.066052628948071 0 0 0 0 2.305462187404089 1.154901959985743 1.8586856641449465 0 [Y{I|L}]KTAEA{M(Oxidation (M))|F}G 6.7849 - 13575 NaN NaN 452756.2 NaN 12234 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15463 66.891 NaN 343340 35 0 25996 0.261 + 20206 NYLHLDYNF 9 60 599.7801034295221 1197.5456539258441 2 599.7803344726562 MULTI HCD FTMS 0 0 0 15460 268520.3125 0.23527065742988879 10 -0.29450225830078125 3 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 76.82478488871298 0.006879825292024087 1 [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F} 9 0 + 87.145 0 0 7.2769 7.2769 90.306 0 0 0 22.376430167995878 80.55085089063013 22.376430167995878 9.208187539523749 0 1.8494850021680094 1.5228787452803376 0 0.4247425010840047 + + [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DYGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}D{M(Oxidation (M))|F}[YN];{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYGG{M(Oxidation (M))|F};[YN]{I|L}HY{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}D{M(Oxidation (M))|F}[YN];[YN]{I|L}HY[{M(Oxidation (M))|F}V]{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]QQHH{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}[KT]YH{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.2769;6.508;5.0008;4.7505;4.2319;3.4934;2.4743;2.2776;1.8755;0.92498 +;-;-;-;-;-;-;-;-;- + 382 NaN NaN 133979.7 NaN 12235 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15464 66.895 NaN 728380 35 0 144170 0.263 -1 0 75 467.2706223900158 1398.7900377702474 3 467.2708435058594 MULTI HCD FTMS 0 0 0 15460 134349.4375 0.1955891798404362 8 -0.22876739501953125 4 NaN NaN 1 NY{I|L} 3 -1 50.674 0 0 3.6227 0 0 0 1005.5784844264035 1005.5784844264035 29.090182831513065 0 0 0 0 0.9247425010840047 2 0 0 NY{I|L} 3.6227 - 70 + NaN NaN 187235.7 NaN 12236 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15465 66.898 NaN 181140 35 0 54256 0.261 + -1 AYMLRSREQ 9 51 585.2883567002699 NaN 0 585.2885131835938 PEAK HCD FTMS 0 0 0 15460 112408.3359375 0.158396043263643 8 -0.22876739501953125 5 Oxidation (M) _AYM(Oxidation (M))LRSREQ_ REV__ENST00000566346.2_1_16:33401403-33412789:+|nuORF 7.910154910731844 0.25691533546754686 1 {I|L}C 2 -1 7.4743 0 0 0.63961 0 0 443.2413119339397 506.2195301668905 949.4608421008302 0 0 0 0 0 0 0 0 0 {I|L}C 0.63961 - 31 + NaN NaN 112058.5 NaN 12237 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15466 66.901 NaN 328660 35 0 22354 0.261 + 29187 TYKDYVDLF 9 86 582.2847126465161 1162.5548723598322 2 582.2736206054688 MULTI HCD FTMS 0 0 0 15460 86855.359375 0.15093464333681395 -8 0.20861053466796875 6 Unmodified _TYKDYVDLF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 33.4449034751529 0.0954363425218424 1 [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F} 9 0 + 42.647 0 0 3.6683 3.6683 85.693 0 0 0 4.426894294997581 4.33107259439744 4.33107259439744 11.0649218306807 0 1.3979400086720375 1.2218487496163564 0.3807196863200844 0 + + [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{M(Oxidation (M))|F}{I|L};[YT][RH][C(Carbamidomethyl (C))S]VQ{I|L};[YT][RH]C{[QD]|[EN]|[WG]|[KD]|[RS]}Q{I|L} 3.6683;2.7166;1.6279;1.2175 +;-;-;- + 584 NaN NaN 148327.4 NaN 12238 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15467 66.905 NaN 139810 35 0 11292 0.261 + 8446 GYYNGKWEFL 10 52 638.8030390663009 1275.5915251994018 2 638.8030395507812 MULTI HCD FTMS 0 0 0 15460 52511.2421875 0.43989330159100604 4 -0.1208343505859375 7 Unmodified _GYYNGKWEFL_ ENSG00000144843|ENST00000357003|ADPRH 22.65808497894818 0.29917593477267174 1 E{M(Oxidation (M))|F}{I|L} 3 7 29.693 0 0 2.3278 0 0 868.394334861525 0 868.394334861525 0 8.494850021680094 0 0 0 0.5 0 0 0 + E{M(Oxidation (M))|F}{I|L} 2.3278 + + 25 NaN NaN 110462.7 NaN 12239 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15468 66.908 NaN 152010 35 0 13754 0.263 + -1 GLMSDLQSGP 10 47 510.7376515932701 1019.4607502533402 2 510.73760986328125 MULTI HCD FTMS 0 0 0 15460 112890.7734375 0.8381838106256974 4 -0.1208343505859375 8 Oxidation (M) _GLM(Oxidation (M))SDLQSGP_ REV__ENSG00000089159|ENST00000637617|PXN;REV__ENST00000323871.9_2_12:120650119-120654597:-|nuORF;REV__nc|ENSG00000089159|P49023-2|PXN;REV__nc|ENSG00000089159|P49023-3|PXN;REV__nc|ENSG00000089159|P49023-4|PXN;REV__nc|ENSG00000089159|P49023|PXN 8.745405648335112 0.42901288225909884 1 YA{I|L} 3 -1 35.445 0 0 3.4769 0 0 654.263630892022 0 654.263630892022 0 8.96205332875283 0 0 0 0.9247425010840047 0 0 0 YA{I|L} 3.4769 - 57 NaN NaN 124679.5 NaN 12240 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15469 66.911 NaN 119160 35 0 7449.6 0.261 + -1 KNRCVNQL 8 42 516.273949896553 1030.5333468599058 2 516.274658203125 MULTI HCD FTMS 0 0 0 15460 12216.9853515625 0.07094074045611685 15 -0.4121856689453125 9 Carbamidomethyl (C) _KNRC(Carbamidomethyl (C))VNQL_ REV__ENST00000083182.7_1_17:58524734-58524857:-|nuORF 7.910154910731844 0.5302565402355366 1 Q{I|L} 2 -1 24.464 0 0 2.3739 0 0 771.3817005841812 0 771.3817005841812 0 24.463950151760656 0 0 0 0.5 0 0 0 Q{I|L} 2.3739 + + 4 NaN NaN 94580.5 NaN 12241 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15470 66.915 NaN 89596 35 0 5012.5 0.261 -1 LFMKIFMFY 9 44 636.311767578125 NaN 0 636.311767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Oxidation (M) _LFM(Oxidation (M))KIFM(Oxidation (M))FY_ ENST00000413765.6_1_7:107834744-107836232:-|nuORF 2.302733041254933 0.2840881193086663 1 Y 1 -1 6.9897 0 0 0.55011 0 0 163.9918118146498 940.5232027643186 1104.5150145789685 0 0 0 0 0 0 0 0 0 Y 0.55011 + + 2 + NaN NaN 93901 NaN 12242 3226 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15472 66.919 NaN 670050 35 0 59603 0.327 + 29399 TYRELVPPF 9 100 561.3021534342066 1120.5897539352131 2 561.288818359375 MULTI HCD FTMS 0 0 0 15471 40608.09765625 0.1881031168993783 -7 0.19911956787109375 1 Unmodified _TYRELVPPF_ REV__ENSG00000115520|ENST00000263960|COQ10B;REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B 18.1463463914782 0.20357593197100715 1 [YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}RT 8 -1 41.672 0 0 3.7188 0 0 0 61.00189729377772 61.00189729377772 12.732081686990583 0 0 0 0 0.28872548999643577 1.0969100130080565 1.6906140654642812 0 [YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}RT 3.7188 - 928 NaN NaN 188302.5 NaN 12243 3227 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15473 66.924 NaN 1074400 35 0 125940 0.261 + 7003 FPWNSHVVL 9 104 549.7903149967343 NaN 0 549.79052734375 PEAK HCD FTMS 0 0 0 15471 403930.65625 1 0 0 2 Unmodified _FPWNSHVVL_ ENSG00000103335|ENST00000301015|PIEZO1 43.77239144664712 0.06617713280084607 1 VV 2 7 15.969 0 0 1.455 0 0 131.09497079941542 765.311599307356 896.4065701067714 0 0 0 0 0 0.5 0 0 0 + VV 1.455 + + 119 + NaN NaN 249159.6 NaN 12244 3227 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15474 66.927 NaN 604800 35 0 74376 0.261 -1 YNFLNQKMN 9 65 594.2814063066825 1186.5482596801648 2 595.2874145507812 MULTI HCD FTMS 0 0 0 15471 178051.421875 1 0 0 3 Oxidation (M) _YNFLNQKM(Oxidation (M))N_ ENSG00000108370|ENST00000262406|RGS9;ENST00000581175.5_1_17:63133658-63206777:+|nuORF;nc|ENSG00000108370|O75916-2|RGS9;nc|ENSG00000108370|O75916-3|RGS9;nc|ENSG00000108370|O75916-5|RGS9 30.636539890814138 0.10832830463492794 1 YN{M(Oxidation (M))|F}{I|L} 4 -1 47.18 0 0 3.9763 0 0 0 646.2619112604124 646.2619112604124 10.859950851565415 0 0 0 0 1.3252574989159953 1.3010299956639813 0 0.3494850021680094 YN{M(Oxidation (M))|F}{I|L} 3.9763 + + 822 + NaN NaN 177314 NaN 12245 3227 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15475 66.931 NaN 303870 35 0 18122 0.261 + 2804 DYILNVMKF 9 74 579.796843480503 1157.5791340278058 2 579.79736328125 MULTI HCD FTMS 0 0 0 15471 76208.2265625 0.17466149380478443 7 -0.19304656982421875 4 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 70.33199760932243 0.0089807860198535 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 82.336 0 0 7.1128 7.1128 89.992 0 0 0 67.55957525565542 14.973024840566467 14.973024840566467 9.208187539523749 0 2.4291746928241125 2 0 0.3252574989159953 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}P[KT]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}VVQ{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}VV[AG]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]DP[KT]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]DVVQ{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 7.1128;6.3173;4.2659;4.1821;3.5579;3.1372;2.513;1.7624;1.6787;0.79589 +;-;-;-;-;-;-;-;-;- + 820 + NaN NaN 137258.6 NaN 12246 3227 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15476 66.934 NaN 269420 35 0 58209 0.261 -1 LYHLCQMF 8 65 556.2569157970703 1110.4992786609405 2 556.25732421875 MULTI HCD FTMS 0 0 0 15471 105783.1171875 0.9002605989020871 -4 0.12410736083984375 5 Carbamidomethyl (C) _LYHLC(Carbamidomethyl (C))QMF_ ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 32.116972079565 0.3321965280364247 1 {I|L}YGYVAE 7 -1 73.92 0 0 6.6565 0 0 0 312.09690271549067 312.09690271549067 47.95117001177921 0 0 0 0 1.6989700043360187 2 0 0 {I|L}YGYVAE 6.6565 - 223 + NaN NaN 128782.8 NaN 12247 3227 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15477 66.937 NaN 252170 35 0 28495 0.261 + 21802 QALLDLHAL 9 59 497.28988401852934 992.5652151038587 2 497.2897033691406 MULTI HCD FTMS 0 0 0 15471 89435.9765625 0.6720239889881993 -1 0.0357208251953125 6 Unmodified _QALLDLHAL_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 39.957323273324995 0.06554068735427583 1 [QA]{I|L}{I|L}D{I|L}HA{I|L} 9 0 + 33.623 0 0 3.3875 3.3875 80.718 0 0 0 8.21719669609444 4.110367599119165 4.110367599119165 3.010299956639816 0 0.7302046884880937 0 0 0 + + [QA]{I|L}{I|L}D{I|L}HA{I|L};[QA]{I|L}{I|L}VEHA{I|L} 3.3875;3.0842 +;- + 150 + NaN NaN 110044.9 NaN 12248 3227 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15479 66.942 NaN 4854400 35 0 1054000 0.327 + 13992 KYSPFVVSF 9 110 537.2870220359804 1072.5594911387607 2 537.2874145507812 MULTI HCD FTMS 0 0 0 15478 3290527.25 1 0 0 1 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 140.63315402491853 1.8728231636916273E-05 1 [YK]SP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F} 9 0 + 90.989 0 0 8.4834 8.4834 93.745 0 0 0 11.127042801912879 50.8116097541118 11.127042801912879 12.028937514676485 0 2.6549471895720984 0 1.3371804965004639 0.5484550065040282 + + [YK]SP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};KYSP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[KS]YP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VAA{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}AA{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[YK]SP{M(Oxidation (M))|F}VSV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SAA{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[VS]AA{M(Oxidation (M))|F}{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F} 8.4834;7.3619;7.2227;7.1961;7.1057;6.8927;6.8017;6.6609;6.5217;6.3575 +;+;-;-;-;-;-;-;-;- + 4061 NaN NaN 728196.6 NaN 12249 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15480 66.947 NaN 1696900 35 0 207180 0.261 + 12747 KYDEIFYNL 9 100 602.7977747539607 1203.5809965747212 2 602.798095703125 MULTI HCD FTMS 0 0 0 15478 1144860 0.17589528203456295 10 -0.28513336181640625 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 121.34585337138759 0.001129813327125052 1 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L} 9 4 + 83.265 0 0 6.9181 6.9181 84.885 0 0 0 5.554169578177337 16.478174818886373 5.554169578177337 0.4275135398928853 0 1.8252574989159953 0 1.7416440611282624 0.6203715150305281 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KEYN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YGG{I|L} 6.9181;6.8826;6.864;6.8084;6.4566;6.3352;6.3172;6.1746;6.1662;6.153 -;-;-;-;-;-;+;-;-;- + 9507 NaN NaN 338494.9 NaN 12250 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15481 66.95 NaN 1354300 35 0 123830 0.261 + 27117 SYMGHFDLL 9 110 541.7524296466896 1081.4903063601791 2 541.7544555664062 MULTI HCD FTMS 0 0 0 15478 429284.84375 0.0865701684255571 -6 0.169708251953125 3 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 1 {I|L}D{M(Oxidation (M))|F}{[HG]|PP}C{I|L}{M(Oxidation (M))|F} 8 5 42.733 0 0 3.9513 0 0 131.0942134277147 0 131.0942134277147 0 22.94345165527765 0 0 0 1.8539171939081172 0 0.6549471895720984 0 {I|L}D{M(Oxidation (M))|F}{[HG]|PP}C{I|L}{M(Oxidation (M))|F} 3.9513 - 1220 + NaN NaN 283264 NaN 12251 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15482 66.954 NaN 614720 35 0 62548 0.261 + 18090 MNEKEVLIQ 9 82 552.2914695322303 NaN 0 552.3098754882812 PEAK HCD FTMS 0 0 0 15478 7919.2001953125 0.7975317927994707 -1 0.0228271484375 4 Unmodified _MNEKEVLIQ_ REV__ENSG00000144674|ENST00000361924|GOLGA4;REV__GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant;REV__nc|ENSG00000144674|Q13439-3|GOLGA4;REV__nc|ENSG00000144674|Q13439-4|GOLGA4;REV__nc|ENSG00000144674|Q13439-5|GOLGA4 13.90604991867851 0.22786006501039813 1 QS{I|L}[QT]SQ 7 -1 39.847 0 0 3.614 0 0 165.1500112465199 162.02315698795158 327.1731682344715 0 0 0 0 0 0 0 1.3684151806525389 0.5941876774005248 QS{I|L}[QT]SQ 3.614 - 588 + NaN NaN 171177.6 NaN 12252 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15483 66.957 NaN 470450 35 0 141600 0.263 + 7659 FYIWRPLRI 9 47 421.91650847376906 1262.7276960215072 3 421.9166564941406 MULTI HCD FTMS 0 0 0 15478 147571.65625 0.835064484481355 4 -0.11792755126953125 5 Unmodified _FYIWRPLRI_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 10.799506525563784 0.2670509983294061 1 YE 2 8 25.217 0 0 1.997 0 0 952.5971606612309 0 952.5971606612309 0 7.257724967479859 0 0 0 0.4247425010840047 0 0 0 YE 1.997 - 12 NaN NaN 148001.4 NaN 12253 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15484 66.96 NaN 272160 35 0 31968 0.261 -1 MRNILMMLT 9 64 585.7867870202999 1169.5590211073998 2 586.7893676757812 MULTI HCD FTMS 0 0 0 15478 113665.9765625 0.9075432421572032 -3 0.08135223388671875 6 3 Oxidation (M) _M(Oxidation (M))RNILM(Oxidation (M))M(Oxidation (M))LT_ ENST00000256412.8_1_8:24241812-24241986:+|nuORF 7.289230182591677 0.29575926068275815 1 Y[DV]{M(Oxidation (M))|F}{I|L}{I|L}QG{[ES]|[DT]|[{I|L}C]} 10 -1 + 29.72 0 0 2.5411 2.5411 81.973 0 0 0 17.04394265628904 2.8554434910878257 2.8554434910878257 6.9897000433601875 0 0 0 0 0.28872548999643577 Y[DV]{M(Oxidation (M))|F}{I|L}{I|L}QG{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{I|L}{I|L}QG{[ES]|[DT]|[{I|L}C]};Y[DV]{M(Oxidation (M))|F}{I|L}N[{I|L}A]{[ES]|[DT]|[{I|L}C]};Y[DV]{M(Oxidation (M))|F}{I|L}{I|L}[AG]G{[ES]|[DT]|[{I|L}C]};YT{[VA]|[{I|L}G]}[WM]T[W{I|L}];[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{I|L}N[{I|L}A]{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{I|L}{I|L}[AG]G{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{I|L}GG[{I|L}A]{[ES]|[DT]|[{I|L}C]};[WE][KS]A[HN][W{I|L}] 2.5411;1.9435;1.7538;1.5107;1.4632;1.1562;0.91304;0.12572;0.034511 -;-;-;-;-;-;-;-;- 517 + NaN NaN 129585.2 NaN 12254 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15485 66.964 NaN 633380 35 0 101560 0.261 + 29260 TYLPAPEGLKF 11 69 618.3371881569985 1234.659823380797 2 618.3367309570312 MULTI HCD FTMS 0 0 0 15478 215759.796875 0.25068397600136694 -6 0.169708251953125 7 Unmodified _TYLPAPEGLKF_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 42.312485326615175 0.12205692784641806 1 [YT]{I|L}PA 5 6 41.95 0 0 3.3977 0 0 0 686.352576685978 686.352576685978 25.575287319555642 0 0 0 0 1.274227503252014 1.6989700043360187 0 0 + [YT]{I|L}PA 3.3977 + + 124 + NaN NaN 184638.2 NaN 12255 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15486 66.967 NaN 225380 35 0 21366 0.261 + 11472 IYQGRLWAF 9 76 577.3109923694093 1152.6074318056185 2 577.3106079101562 MULTI HCD FTMS 0 0 0 15478 45614.49609375 0.20054975308151765 7 -0.19974517822265625 8 Unmodified _IYQGRLWAF_ ENSG00000206047|ENST00000382692|DEFA1;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000240247|ENST00000382689|DEFA1B 34.10243960390752 0.09241788333544565 1 WA{M(Oxidation (M))|F} 3 6 33.188 0 0 2.8793 0 0 730.41118056465 0 730.41118056465 0 -1.0771841425634676 -1.0771841425634676 0 0 0.8494850021680094 0 0 0 + WA{M(Oxidation (M))|F} 2.8793 + + 24 NaN NaN 114931.7 NaN 12256 3228 15478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15488 66.972 NaN 1522800 35 0 180010 0.327 + 12748 KYDEIFYNL 9 97 602.7977747539607 1203.5809965747212 2 602.7981567382812 MULTI HCD FTMS 0 0 0 15487 1018895.8125 0.156542255213321 11 -0.30464935302734375 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 107.09958533191995 0.0034159042678574016 1 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L} 9 4 + 74.992 0 0 6.2307 6.2307 83.674 0 0 0 4.023722004121453 13.467874862246568 4.023722004121453 0.5115252244738144 0 1.8494850021680094 0 1.2803695511246984 0.5891368308784531 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}EYK{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KEYN{I|L} 6.2307;6.1882;6.0844;5.9896;5.8964;5.7918;5.6843;5.6543;5.5143;5.5 -;-;-;-;-;-;-;+;-;- + 9890 NaN NaN 319951.4 NaN 12257 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15489 66.976 NaN 1406500 35 0 78271 0.261 + 27183 SYNNFFRMF 9 108 621.2738121112648 1240.5330712893294 2 621.274169921875 MULTI HCD FTMS 0 0 0 15487 780028.1875 0.15432447298860405 31 -0.8126602172851562 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 104.25 0 0 8.4036 8.4036 92.114 0 0 0 66.04605897940615 10.642492736872597 10.642492736872597 9.208187539523749 0 2.7104093769761874 2 0 0.7302046884880937 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY;{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY;{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY 8.4036;7.6613;7.6613;7.4923;6.9225;6.75;6.5356;6.529;5.7933;5.5723 +;-;-;+;-;-;-;-;-;- + 3322 + NaN NaN 297082.2 NaN 12258 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15490 66.98 NaN 1420000 35 0 386280 0.263 -1 TAMDVVYAL 9 56 499.7466991268183 997.4788453204367 2 499.74700927734375 MULTI HCD FTMS 0 0 0 15487 637225.4375 0.7008603605637977 6 -0.170257568359375 3 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 1 VYA{I|L} 4 -1 42.735 0 0 4.2843 0 0 533.2157651033135 0 533.2157651033135 0 30.032059605518313 0 0 0 1.3807196863200843 0 0 0 VYA{I|L} 4.2843 + + 59 NaN NaN 301714.7 NaN 12259 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15491 66.983 NaN 617570 35 0 101080 0.261 + 35573 YYIDKLEYL 9 77 610.3158445586632 1218.6171361841264 2 610.3161010742188 MULTI HCD FTMS 0 0 0 15487 414915.28125 0.15439564137695447 11 -0.30464935302734375 4 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 80.6760300276096 0.005633624786464751 1 YY{I|L}DK{I|L}EY{I|L} 9 0 + 86.498 0 0 7.0981 7.0981 87.812 0 0 0 5.570947463396209 56.72212741510407 5.570947463396209 6.020599913279625 0 2.1549471895720984 2 0.28872548999643577 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK{I|L}E{I|L}Y;YY{I|L}DK[YE]{I|L}{I|L};YY{I|L}[YE]{I|L}DK{I|L};YY{I|L}[YE]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}EY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}E{I|L}Y;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[YE]{I|L}YY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY[YE]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[YE]{I|L}Y{I|L}Y 7.0981;6.604;5.6265;4.2952;3.5175;3.3541;2.86;2.2943;1.8825;1.8003 +;-;-;-;-;-;-;-;-;- + 631 NaN NaN 177168.3 NaN 12260 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15492 66.986 NaN 2228400 35 0 307950 0.262 + 27118 SYMGHFDLL 9 109 541.7524296466896 1081.4903063601791 2 541.752685546875 MULTI HCD FTMS 0 0 0 15487 1010910.25 0.20386154293531833 -5 0.15029144287109375 5 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 111.28704002717404 0.0027322905094575235 1 SYMGH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 81.609 0 0 7.546 7.546 93.4 0 0 0 26.475540908469597 19.220449851406514 19.220449851406514 17.042425094393252 0 2.4247425010840047 2 0.9559771852360797 0 + + SYMGH{M(Oxidation (M))|F}D{I|L}{I|L};SYMG{M(Oxidation (M))|F}HD{I|L}{I|L};SYMG{M(Oxidation (M))|F}EVH{I|L};{[{M(Oxidation (M))|F}C]|[YS]}MGH{M(Oxidation (M))|F}D{I|L}{I|L};SY[YV]{[HG]|PP}P{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{M(Oxidation (M))|F}D{I|L}{I|L};SY[YV][YR][MT];[HV][RN]HGC{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}M[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YR]MSY{I|L} 7.546;5.9702;5.2035;4.8423;4.6499;4.1764;2.7435;2.4925;2.33;2.2356 +;-;-;+;-;-;-;-;-;- + 2002 + NaN NaN 424418.8 NaN 12261 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15493 66.99 NaN 396000 35 0 36496 0.261 + 22426 QPYSQEWEL 9 68 590.2691938318918 1178.5238347305835 2 590.26953125 MULTI HCD FTMS 0 0 0 15487 138668.8125 0.4387633511838566 5 -0.1407318115234375 6 Unmodified _QPYSQEWEL_ ENSG00000103061|ENST00000263997|SLC7A6OS 17.11289562659939 0.2125047172822487 1 YWVHE{I|L} 6 6 46.631 0 0 3.9567 0 0 333.1355245991321 0 333.1355245991321 0 38.40411276716473 0 0 0 0.4247425010840047 0 0.4247425010840047 0 YWVHE{I|L} 3.9567 - 320 NaN NaN 149056 NaN 12262 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15494 66.993 NaN 670270 35 0 82516 0.261 + 29188 TYKDYVDLF 9 95 582.2847126465161 1162.5548723598322 2 582.2844848632812 MULTI HCD FTMS 0 0 0 15487 265763.46875 0.461835799844513 -5 0.15029144287109375 7 Unmodified _TYKDYVDLF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 83.42873516780209 0.004742894019233849 1 [YT]KDYVD{I|L}{M(Oxidation (M))|F} 9 0 + 93.197 0 0 8.0165 8.0165 92.748 0 0 0 24.76203644159419 58.336586673740875 24.76203644159419 11.064921830680703 0 2.1549471895720984 2 0.3807196863200844 0.6747425010840047 + + [YT]KDYVD{I|L}{M(Oxidation (M))|F};[YT]KDYVD{M(Oxidation (M))|F}{I|L};[YK]TDYVD{I|L}{M(Oxidation (M))|F};[YT]KDYV[{M(Oxidation (M))|F}E]V;[YK]TDYVD{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[KT]YVD{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}TEK[YT]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[KT]YVD{M(Oxidation (M))|F}{I|L};[YT]KD[{I|L}V]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}TE[YT]K{M(Oxidation (M))|F} 8.0165;7.0648;5.5189;5.194;4.5672;4.2956;3.4748;3.3438;3.246;3.1757 +;-;-;-;-;-;-;-;-;- + 1302 NaN NaN 191537.5 NaN 12263 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15495 66.996 NaN 392850 35 0 31230 0.261 + 10114 IFIQNSKLYF 10 72 636.8528552413194 1271.6911575494387 2 636.8536376953125 MULTI HCD FTMS 0 0 0 15487 126618.3671875 0.4175744732380722 -5 0.15029144287109375 8 Unmodified _IFIQNSKLYF_ ENSG00000138459|ENST00000492406|SLC35A5 75.5705956163825 0.010984675281887875 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QNSK{I|L}Y{M(Oxidation (M))|F} 10 0 + 68.498 0 0 5.3864 5.3864 86.162 0 0 0 7.269987279362624 62.528740917971106 7.269987279362624 9.164539485499255 0 2.6549471895720984 0 0.3807196863200844 0.3807196863200844 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QNSK{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QGGSK{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]NSK{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NG]ASK{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QNSKY{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]GGSK{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QGGSKY{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]NSKY{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NG]ASKY{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]GGSKY{I|L}{M(Oxidation (M))|F} 5.3864;4.6657;4.6657;4.5092;4.1442;3.9479;3.4235;3.4235;3.267;2.7057 +;-;-;-;-;-;-;-;-;- + 541 NaN NaN 142087.1 NaN 12264 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15496 67 NaN 182610 35 0 56257 0.262 + 28225 TLFPQSPIF 9 52 525.2882776373591 NaN 0 525.28857421875 PEAK HCD FTMS 0 0 0 15487 84856.2265625 0.6139695059165297 -2 0.05231475830078125 9 Unmodified _TLFPQSPIF_ REV__ENSG00000061987|ENST00000393630|MON2;REV__ENST00000547095.5_1_12:62864501-62986526:+|nuORF;REV__ENST00000551307.5_1_12:62954224-62986526:+|nuORF;REV__nc|ENSG00000061987|Q7Z3U7-2|MON2;REV__nc|ENSG00000061987|Q7Z3U7-3|MON2;REV__nc|ENSG00000061987|Q7Z3U7-5|MON2;REV__nc|ENSG00000061987|Q7Z3U7-6|MON2 7.910154910731844 0.25691533546754686 1 W 1 -1 5.4846 0 0 0.52305 0 0 130.17632448025125 729.2847384088499 859.4610628891012 0 0 0 0 0 0 0 0 0 W 0.52305 - 3 + NaN NaN 109316.6 NaN 12265 3229 15487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15498 67.005 NaN 500440 35 0 73015 0.327 + 19909 NYFIPSHYF 9 68 594.2814063066825 1186.5482596801648 2 595.3018798828125 MULTI HCD FTMS 0 0 0 15497 138498.46875 0.777856572508767 3 -0.07513427734375 1 Unmodified _NYFIPSHYF_ ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH 25.399314129420986 0.14091189997036632 1 YV{M(Oxidation (M))|F}K[QP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9 7 + 49.033 0 0 4.1324 4.1324 81.876 0 0 0 10.879231027444405 3.943481302951284 3.943481302951284 3.943481302951284 0 1.492992819099939 2 0 0 YV{M(Oxidation (M))|F}K[QP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YN{M(Oxidation (M))|F}{I|L}[C(Carbamidomethyl (C))R]V{[ES]|[DT]|[{I|L}C]};YN{M(Oxidation (M))|F}[QP]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YN{M(Oxidation (M))|F}[QP]Q{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YN{M(Oxidation (M))|F}{I|L}[QP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YV{M(Oxidation (M))|F}K[C(Carbamidomethyl (C))R]V{[ES]|[DT]|[{I|L}C]};YYP[EP]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YN{M(Oxidation (M))|F}W{[QD]|[EN]|[WG]|[KD]|[RS]}A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YN{M(Oxidation (M))|F}W{[QD]|[EN]|[WG]|[KD]|[RS]}V{[ES]|[DT]|[{I|L}C]};YN{M(Oxidation (M))|F}{I|L}[DG]{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.1324;3.8;3.5712;3.4825;3.3809;3.2669;3.188;2.938;2.7896;2.6241 -;-;-;-;-;-;-;-;-;- 889 + NaN NaN 157699.8 NaN 12266 3230 15497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15499 67.009 NaN 259270 35 0 48797 0.261 + 22112 QIIEADEVL 9 54 515.2766172926675 1028.538681652135 2 515.277099609375 MULTI HCD FTMS 0 0 0 15497 149646.140625 0.4068832835634474 -4 0.1208343505859375 2 Unmodified _QIIEADEVL_ ENSG00000155876|ENST00000380527|RRAGA 31.26834338654808 0.10542797264966089 1 DEV{I|L} 4 5 42.295 0 0 4.1121 0 0 554.309373924025 0 554.309373924025 0 39.820618910682484 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + DEV{I|L} 4.1121 + + 14 NaN NaN 119472.5 NaN 12267 3230 15497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15500 67.013 NaN 203820 35 0 11201 0.261 -1 VYMDWYEKF 9 68 648.7841424681742 NaN 0 648.7843017578125 PEAK HCD FTMS 0 0 0 15497 67317.0390625 0.7427850786470672 11 -0.291351318359375 3 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 37.07464296494664 0.08765712315935065 1 Y{M(Oxidation (M))|F}DW 4 -1 27.18 0 0 2.098 0 0 99.06954544472553 582.2558687799436 681.3254142246692 0 0 0 0 0 0.8252574989159953 0 0 0 Y{M(Oxidation (M))|F}DW 2.098 + + 64 + NaN NaN 111238.2 NaN 12268 3230 15497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15501 67.016 NaN 104140 35 0 26781 0.264 -1 HKFLVQEIMF 10 39 436.56679858948127 NaN 0 436.56658935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _HKFLVQEIM(Oxidation (M))F_ ENSG00000151503|ENST00000534548|NCAPD3 0.776531954647913 0.3395196853010637 1 {I|L} 1 -1 3.0989 0 0 0.35574 0 0 436.11682974556567 318.8853853815063 755.002215127072 0 0 0 0 0 0 0 0 0 {I|L} 0.35574 + + 2 + NaN NaN 95547.1 NaN 12269 3230 15497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15503 67.021 NaN 2083300 35 0 408490 0.327 + 5944 FPDPNVKYVF 10 113 613.3165422889869 1224.6185316447736 2 613.33251953125 MULTI HCD FTMS 0 0 0 15502 457987.90625 0.3488513024903442 17 -0.45885467529296875 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 48.56086444690353 0.08302335073406558 1 YYTE{I|L}KYV 8 7 46.836 0 0 3.8246 0 0 0 162.03683347010715 162.03683347010715 -3.957866885181133 0 -3.957866885181133 0 0 0.5796896906561032 1.6989700043360187 0.6643943297944485 0.2614393726401688 YYTE{I|L}KYV 3.8246 - 2963 NaN NaN 399085.4 NaN 12270 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15504 67.025 NaN 1777100 35 0 116460 0.261 + 24937 RYSVFFQSL 9 123 573.7982647685991 1145.581976603998 2 573.7981567382812 MULTI HCD FTMS 0 0 0 15502 671846.3125 0.20823055667305346 9 -0.25563812255859375 2 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 51.487983226225225 0.029489205318603332 1 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 9 3 + 79.21 0 0 6.9144 6.9144 89.613 0 0 0 9.053331073971762 20.488861539154613 9.053331073971762 9.208187539523749 0 1.610924374808178 1.2218487496163564 0.7059771852360797 0 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[AG]{I|L};[Y{I|L}]KT[RD]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YR]SV{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[Y{I|L}]KTAY{M(Oxidation (M))|F}Q{I|L} 6.9144;6.1106;6.1037;5.7436;5.2999;5.2707;5.0111;4.9398;4.933;4.9261 -;-;-;-;-;-;+;-;-;- + 10593 NaN NaN 357743.7 NaN 12271 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15505 67.029 NaN 1006200 35 0 77910 0.261 + 29249 TYLNYVVHL 9 108 561.3021534342066 1120.5897539352131 2 561.2889404296875 MULTI HCD FTMS 0 0 0 15502 90590.3828125 0.41962894968354764 -3 0.07849884033203125 3 Unmodified _TYLNYVVHL_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 69.10491478415734 0.009377850133389008 1 [YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}VG 8 6 53.987 0 0 4.8178 0 0 0 162.07886200522503 162.07886200522503 15.19893018631128 0 0 0 0 0.4247425010840047 1.6989700043360187 1.4436726795685342 0 [YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}VG 4.8178 - 1633 NaN NaN 237790.5 NaN 12272 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15506 67.032 NaN 592110 35 0 60396 0.261 + 31729 VYLKYLASF 9 85 552.309961451096 1102.605369968992 2 553.3001708984375 MULTI HCD FTMS 0 0 0 15502 23624.47265625 0.38436456725290774 7 -0.206634521484375 4 Unmodified _VYLKYLASF_ ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000487976.2_1_9:100136781-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9-3|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180 7.910154910731844 0.2910521888787154 1 QS{[ET]|[MV]}{I|L}SQ{M(Oxidation (M))|F} 8 7 32.974 0 0 2.9905 0 0 164.18448481449815 0 164.18448481449815 0 14.257798002231382 0 0 0 0 0 0.5629529932484498 0 QS{[ET]|[MV]}{I|L}SQ{M(Oxidation (M))|F} 2.9905 - 983 + NaN NaN 166834.6 NaN 12273 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15507 67.035 NaN 367860 35 0 68027 0.262 -1 0 64 467.2706223900158 1398.7900377702474 3 467.2709655761719 MULTI HCD FTMS 0 0 0 15502 120751.390625 0.1757928123587111 13 -0.33699798583984375 5 NaN NaN 1 NY{I|L} 3 -1 55.445 0 0 3.9638 0 0 0 1005.5782497276206 1005.5782497276206 37.99803764475705 0 0 0 0 0.9247425010840047 2 0 0 NY{I|L} 3.9638 - 51 + NaN NaN 135787.7 NaN 12274 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15508 67.039 NaN 217670 35 0 12385 0.261 + 20207 NYLHLDYNF 9 60 599.7801034295221 1197.5456539258441 2 599.779541015625 MULTI HCD FTMS 0 0 0 15502 194291.4375 0.17023320808783562 15 -0.39620208740234375 6 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 51.629811660486645 0.02929079705179888 1 DYN{M(Oxidation (M))|F} 4 5 40.974 0 0 3.4215 0 0 640.333787986525 0 640.333787986525 0 20.79689690656103 0 0 0 1 0 0 0.3807196863200844 + DYN{M(Oxidation (M))|F} 3.4215 + + 127 NaN NaN 124310.5 NaN 12275 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15509 67.042 NaN 125340 35 0 11182 0.261 + 2379 DPGGGGSP 8 59 643.2681517421674 642.2608752755674 1 643.26904296875 MULTI HCD FTMS 0 0 0 15502 51939.7265625 0.4120641738885854 4 -0.121246337890625 7 Unmodified _DPGGGGSP_ REV__ENST00000397323.8_2_8:30242577-30332371:+|nuORF 0.7936320650641473 0.540814922690045 1 Q 1 -1 3.4949 0 0 0.54415 0 0 86.91188953513615 424.2751864068969 511.18707594203306 0 0 0 0 0 0 0 0 0 Q 0.54415 - 12 + NaN NaN 106560.3 NaN 12276 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15510 67.045 NaN 161680 35 0 28234 0.261 -1 MPDWFEAKL 9 67 576.7727060820547 1151.5308592309093 2 576.772216796875 MULTI HCD FTMS 0 0 0 15502 21124.708984375 0.20794631573499306 8 -0.23282623291015625 8 Oxidation (M) _M(Oxidation (M))PDWFEAKL_ ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant 29.84058131909904 0.11198220037953927 1 AK{I|L} 3 -1 27.906 0 0 2.4234 0 0 821.301073142775 0 821.301073142775 0 15.230012720637374 0 0 0 0.75 0 0 0.3494850021680094 AK{I|L} 2.4234 + + 79 NaN NaN 107141.4 NaN 12277 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15511 67.049 NaN 169160 35 0 35516 0.262 -1 LGLILYCVCKW 11 41 456.5784833434032 1366.7136206304097 3 456.5787353515625 MULTI HCD FTMS 0 0 0 15502 70786.2734375 0.026078691847492962 67 -1.7905044555664062 9 Carbamidomethyl (C) _LGLILYCVC(Carbamidomethyl (C))KW_ ENSG00000161929|ENST00000574081|SCIMP 2.843284757254958 0.4064509854383032 1 W 1 -1 20.485 0 0 1.4988 0 0 1162.623607057947 0 1162.623607057947 0 19.771212547196622 0 0 0 0.5 0 0 0 W 1.4988 + + 14 + NaN NaN 107998.6 NaN 12278 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15512 67.052 NaN 282610 35 0 37269 0.261 + 35130 YVEQDDEI 8 62 505.71899403974226 1009.4234351462845 2 505.71917724609375 MULTI HCD FTMS 0 0 0 15502 47689.51953125 0.45354253805892164 -3 0.07849884033203125 10 Unmodified _YVEQDDEI_ REV__ENSG00000082074|ENST00000512982|FYB1;REV__nc|ENSG00000082074|O15117-3|FYB1;REV__nc|ENSG00000082074|O15117|FYB1 21.74664581756881 0.4337896562907935 1 YE{I|L} 3 -1 33.5 0 0 3.3187 0 0 586.2236691595259 0 586.2236691595259 0 16.510234424404686 0 0 0 0.7302046884880938 0 0 0 YE{I|L} 3.3187 - 50 NaN NaN 129280 NaN 12279 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15513 67.055 NaN 143820 35 0 8862.2 0.261 -1 0 59 471.3538772824028 NaN 0 471.2093505859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 NaN NaN 1 V 1 -1 5.4846 0 0 0.58303 0 0 64.30803356985537 774.2953420250453 838.6033755949007 0 0 0 0 0 0 0 0 0 V 0.58303 - 43 + NaN NaN 107901.4 NaN 12280 3231 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15515 67.06 NaN 153290 35 0 34901 0.327 -1 ENKFLCVLM 9 49 585.2883567002699 NaN 0 585.2874755859375 PEAK HCD FTMS 0 0 0 15514 34299.37109375 0.048331688414123504 14 -0.35677337646484375 1 Carbamidomethyl (C),Oxidation (M) _ENKFLC(Carbamidomethyl (C))VLM(Oxidation (M))_ ENSG00000179335|ENST00000395066|CLK3;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3 3.944395688203298 0.27613285122220627 1 {I|L} 1 -1 5.4846 0 0 0.46934 0 0 129.05959122987616 923.3948458307249 1052.454437060601 0 0 0 0 0 0 0 0 0 {I|L} 0.46934 + + 5 + NaN NaN 106755 NaN 12281 3232 15514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15516 67.065 NaN 264020 35 0 30006 0.261 + 5757 FPAGYMYPSM 10 71 590.2457738184258 1178.4769947036516 2 590.2466430664062 MULTI HCD FTMS 0 0 0 15514 59808.94140625 0.2747859783045429 64 -1.6986846923828125 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 48.345845343767074 0.08380532769255708 1 ME{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Y[WE] 8 8 + 48.65 0 0 4.1282 4.1282 83.246 0 0 0 36.95554701812867 4.805906063131715 4.805906063131715 7.215853585746785 0 1.4247425010840047 0 1.1549471895720984 0 ME{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Y[WE];M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE];ME[HV]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}];[WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}] 4.1282;3.5159;2.6275;1.891 -;-;-;- 358 + NaN NaN 122194.3 NaN 12282 3232 15514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15517 67.068 NaN 128690 35 0 11372 0.261 + -1 TAFYKLMM 8 62 510.74901358838196 NaN 0 510.7386779785156 PEAK HCD FTMS 0 0 0 15514 7602.72021484375 0.48166860010084794 -3 0.08843994140625 3 Oxidation (M) _TAFYKLM(Oxidation (M))M_ REV__ENSG00000108239|ENST00000225235|TBC1D12 4.3292370932331545 0.38822285293237185 1 AY 2 -1 7.9588 0 0 0.78067 0 0 131.1182269641261 651.2452007686302 782.3634277327562 0 0 0 0 0 0 0 0 0 AY 0.78067 - 35 + NaN NaN 97076.9 NaN 12283 3232 15514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15518 67.071 NaN 99382 35 0 5032.7 0.261 + 5041 FDLHNENQFI 10 41 638.8030390663009 1275.5915251994018 2 638.80419921875 MULTI HCD FTMS 0 0 0 15514 40013.55078125 0.3351985637417167 10 -0.265228271484375 4 Unmodified _FDLHNENQFI_ ENST00000421351.3_1_6:138411940-138412057:-|nuORF 2.735195868890462 0.4608258780945842 1 {M(Oxidation (M))|F}{I|L} 2 8 20.969 0 0 1.6439 0 0 997.4310030502489 0 997.4310030502489 0 20.48455006504028 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L} 1.6439 + + 4 NaN NaN 97065.6 NaN 12284 3232 15514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15519 67.075 NaN 143900 35 0 7226 0.261 -1 HYIFLKMCF 9 55 629.8088525076146 1257.603152082029 2 629.8204956054688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _HYIFLKMC(Carbamidomethyl (C))F_ ENST00000370812.7_2_1:77557956-77558046:-|nuORF 7.910154910731844 0.2910521888787154 1 MHY{I|L}C 5 -1 30.433 0 0 2.4199 0 0 0 607.2932833307249 607.2932833307249 -2.7545373444029053 0 -2.7545373444029053 0 0 0 0 0 0 MHY{I|L}C 2.4199 - 46 + NaN NaN 99374.1 NaN 12285 3232 15514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15521 67.08 NaN 1917200 35 0 380170 0.327 + 13993 KYSPFVVSF 9 94 537.2870220359804 1072.5594911387607 2 537.2874145507812 MULTI HCD FTMS 0 0 0 15520 911271.6875 0.2769378942234865 5 -0.14771270751953125 1 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 106.94017166704063 0.003441928997083001 1 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 72.207 0 0 6.7322 6.7322 91.28 0 0 0 2.464825806156256 32.977992154479715 2.464825806156256 13.512870643024229 0 2.7302046884880937 0 0.9749073637206092 0.2302046884880938 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[KS]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]N[YV]VVS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}VYPKS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYPKS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SVYPKS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]GG[YV]VVS{M(Oxidation (M))|F};[YK][{I|L}P][YG]VS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}VYV{[NV]|[RG]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYV{[NV]|[RG]}{M(Oxidation (M))|F} 6.7322;5.4723;5.4194;5.0498;5.0498;4.5623;4.5609;3.9186;3.8268;3.8268 +;-;-;-;-;-;-;-;-;- + 694 NaN NaN 376938.9 NaN 12286 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15522 67.084 NaN 913180 35 0 112350 0.261 + 12749 KYDEIFYNL 9 79 602.7977747539607 1203.5809965747212 2 602.7980346679688 MULTI HCD FTMS 0 0 0 15520 553027.5625 0.08496666760898659 15 -0.399932861328125 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 67.83816525789305 0.009787749748478139 1 {NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L} 9 4 + 70.237 0 0 5.8356 5.8356 84.356 0 0 0 5.440228147639203 10.14645333192 5.440228147639203 3.3597908497636553 0 2.2302046884880937 0 0.7134679910804405 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EK{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}EKYN{I|L};{NN|[MP]|[D{I|L}]|[EV]}K[YE]{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}{M(Oxidation (M))|F}DK;{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L} 5.8356;5.5565;5.3836;5.2485;5.1045;5.0706;4.9985;4.9878;4.9237;4.795 -;-;-;-;-;-;-;-;-;- 3605 NaN NaN 225747.6 NaN 12287 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15523 67.088 NaN 851240 35 0 55799 0.261 + 29250 TYLNYVVHL 9 105 561.3021534342066 1120.5897539352131 2 561.288818359375 MULTI HCD FTMS 0 0 0 15520 99810.0625 0.4623359609972312 -1 0.01949310302734375 3 Unmodified _TYLNYVVHL_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 78.7280429016045 0.006263961847259105 1 [YT]{I|L}NYVVH{I|L} 9 0 + 55.759 0 0 4.9759 4.9759 86.235 0 0 0 17.558101791179638 2.592254816411156 2.592254816411156 9.208187539523749 0 1.892642683904553 1.6989700043360187 0 0 + + [YT]{I|L}NYVVH{I|L};[YT]{I|L}GGYVVH{I|L};[YT]{M(Oxidation (M))|F}KDVVH{I|L};[YT]{I|L}Q{M(Oxidation (M))|F}TVH{I|L};[Y{I|L}]TNYVVH{I|L};{M(Oxidation (M))|F}YTKDVVH{I|L};[YT]{I|L}[AG]{M(Oxidation (M))|F}TVH{I|L};[Y{I|L}]TQ{M(Oxidation (M))|F}TVH{I|L};[Y{I|L}]TGGYVVH{I|L};[YT]{M(Oxidation (M))|F}[K{I|L}]E[HA]{I|L} 4.9759;4.1542;3.8985;3.4237;3.1687;3.0607;2.3443;2.0902;1.8167;1.5912 +;-;-;-;-;-;-;-;-;- + 1142 + NaN NaN 215799 NaN 12288 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15524 67.091 NaN 936250 35 0 122370 0.261 + 16167 LPVEEEAVTL 10 95 550.2986463516645 1098.582739770129 2 550.298828125 MULTI HCD FTMS 0 0 0 15520 327561.78125 0.9925120191556566 -1 0.01949310302734375 4 Unmodified _LPVEEEAVTL_ ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 39.94969957227396 0.1458432724694501 1 EAVT{I|L} 5 5 49.865 0 0 4.539 0 0 567.2914295880875 0 567.2914295880875 0 26.90614065464281 0 0 0 1.4247425010840047 0 0.3054621874040891 0 + EAVT{I|L} 4.539 + + 500 NaN NaN 224211.7 NaN 12289 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15525 67.094 NaN 402020 35 0 25679 0.261 + 11377 IYNQVNVVL 9 89 531.3030945351012 1060.5916361370023 2 531.3036499023438 MULTI HCD FTMS 0 0 0 15520 100753.484375 0.8347450345359283 1 -0.03279876708984375 5 Unmodified _IYNQVNVVL_ ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF 42.09456458481378 0.05572955244001856 1 NVV{I|L} 4 5 49.042 0 0 4.6241 0 0 617.3177955686269 0 617.3177955686269 0 31.41773141135175 0 0 0 1.4247425010840047 0 0 0.5866968715561641 + NVV{I|L} 4.6241 + + 489 NaN NaN 147051.2 NaN 12290 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15526 67.098 NaN 163440 35 0 9275 0.261 + 6334 FPFYYEIKM 9 59 627.2987212994602 1252.5828896657204 2 627.2974853515625 MULTI HCD FTMS 0 0 0 15520 32143.77734375 0.03824070009345654 -30 0.7631454467773438 6 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 40.23920728925047 0.06424668180817725 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F} 9 0 + 58.254 0 0 4.6507 4.6507 88.762 0 0 0 45.0667531214534 7.944539621753535 7.944539621753535 20.479465618955494 0 2.159379381312206 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]{I|L}Q{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]{I|L}[AG]{M(Oxidation (M))|F} 4.6507;3.0158;3.0158;2.2806 +;+;-;- + 128 + NaN NaN 106047.1 NaN 12291 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15527 67.101 NaN 172550 35 0 17936 0.261 -1 0 47 604.7680411660131 1207.521529398826 2 605.7720336914062 MULTI HCD FTMS 0 0 0 15520 38829.2109375 0.05284553441991771 73 -1.9144287109375 7 NaN NaN 1 D{M(Oxidation (M))|F}E[QP]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 -1 42.44 0 0 3.5146 0 0 164.07734206463766 0 164.07734206463766 0 31.95554701812867 0 0 0 0.8494850021680094 0 0.805462187404089 0.3494850021680094 D{M(Oxidation (M))|F}E[QP]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 3.5146 - 99 + NaN NaN 126391.2 NaN 12292 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15528 67.104 NaN 77697 35 0 6215 0.261 -1 IYVALFPCHE 10 39 624.8060554003468 NaN 0 624.8063354492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _IYVALFPC(Carbamidomethyl (C))HE_ tr|U7SMC8|U7SMC8_FUSNUdCMPdeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01904PE=3SV=1 3.2813086475875832 0.33737594360511275 1 Q 1 -1 6.9897 0 0 0.56025 0 0 276.1535403887811 840.3700045221311 1116.5235449109123 0 0 0 0 0 0 0 0 0 Q 0.56025 - 6 + NaN NaN 98386.2 NaN 12293 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15529 67.108 NaN 200590 35 0 30073 0.263 + 1920 DADDAVYEL 9 63 505.71899403974226 1009.4234351462845 2 506.2212219238281 MULTI HCD FTMS 0 0 0 15520 8190.01416015625 0.32715098938255943 1 -0.03279876708984375 9 Unmodified _DADDAVYEL_ ENSG00000100650|ENST00000557154|SRSF5;ENSG00000116350|ENST00000373795|SRSF4;ENSG00000124193|ENST00000244020|SRSF6;ENST00000554465.5_1_14:70234873-70235638:+|nuORF;ENST00000556436.1_1_14:70234873-70235392:+|nuORF;ENST00000605204.1_1_1:29486580-29492463:-|nuORF;nc|ENSG00000100650|Q13243-2|SRSF5;nc|ENSG00000100650|Q13243-3|SRSF5;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant 13.90604991867851 0.24021115267848145 1 YYE{I|L} 4 6 36.67 0 0 3.6328 0 0 423.1679859845719 0 423.1679859845719 0 36.67017533604145 0 0 0 0.7742275032520141 0 0 0 YYE{I|L} 3.6328 - 28 NaN NaN 120555.7 NaN 12294 3233 15520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15531 67.112 NaN 1077300 35 0 186330 0.327 + 29261 TYLPAPEGLKF 11 67 618.3371881569985 1234.659823380797 2 618.3372192382812 MULTI HCD FTMS 0 0 0 15530 860684.4375 1 0 0 1 Unmodified _TYLPAPEGLKF_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 64.9267550582149 0.020241327821910484 1 [YT]{I|L}PA[EP]G{I|L}K{M(Oxidation (M))|F} 11 0 + 55.863 0 0 4.5246 4.5246 90.48 0 0 0 30.06099481199204 0.2918756845086179 0.2918756845086179 55.86297616463785 0 2.441962823435958 1.6989700043360187 0 0.3494850021680094 + + [YT]{I|L}PA[EP]G{I|L}K{M(Oxidation (M))|F} 4.5246 + + 392 + NaN NaN 250037.5 NaN 12295 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15532 67.117 NaN 476620 35 0 29901 0.261 + 2898 DYSPYFKTI 9 91 567.2791460627044 1132.5437391922087 2 567.2792358398438 MULTI HCD FTMS 0 0 0 15530 284855.0625 0.011553107639467684 150 -4.05853271484375 2 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.24910588100465 0.021429789259086996 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 62.378 0 0 5.5078 5.5078 88.126 0 0 0 17.78659694992122 10.230012720637376 10.230012720637376 10.230012720637376 0 2.0189301784845295 1.6989700043360187 0.3807196863200844 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{M(Oxidation (M))|F} 5.5078;4.6045;3.9373;3.034;2.2844 +;-;-;-;- + 429 NaN NaN 151899 NaN 12296 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15533 67.121 NaN 317740 35 0 28973 0.261 + 15990 LPQPTEINL 9 65 512.7893080540243 1023.5640631748487 2 512.786865234375 MULTI HCD FTMS 0 0 0 15530 213085.140625 1 0 0 3 Unmodified _LPQPTEINL_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-4|MTRF1L 45.739877483867886 0.03899552410870734 1 {I|L}E{I|L}N{I|L} 5 4 51.128 0 0 4.9951 0 0 423.21226699043126 0 423.21226699043126 0 29.165090889956673 0 0 0 1.3807196863200843 0 0 0.3252574989159953 {I|L}E{I|L}N{I|L} 4.9951 - 188 NaN NaN 126917.2 NaN 12297 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15534 67.124 NaN 215640 35 0 22522 0.261 + 34470 YPFELEKDLHL 11 61 468.57824518891766 1402.712906166953 3 468.5781555175781 MULTI HCD FTMS 0 0 0 15530 61065.98828125 0.8620879755964511 1 -0.0295257568359375 4 Unmodified _YPFELEKDLHL_ ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF 10.016264844850085 0.3698103677728216 1 YP 2 9 37.58 0 0 2.6791 0 0 0 1139.5735086683308 1139.5735086683308 24.085142482848298 0 0 0 0 0.28872548999643577 1.5228787452803376 0 0 + YP 2.6791 + + 38 + NaN NaN 122872.6 NaN 12298 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15535 67.127 NaN 154070 35 0 23021 0.261 -1 MPDWFEAKL 9 70 576.7727060820547 1151.5308592309093 2 576.7743530273438 MULTI HCD FTMS 0 0 0 15530 59219.5625 0.5829424609078228 11 -0.26831817626953125 5 Oxidation (M) _M(Oxidation (M))PDWFEAKL_ ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant 18.1463463914782 0.20357593197100715 1 [YE]{I|L}H 4 -1 20.59 0 0 1.7881 0 0 0 606.272228209678 606.272228209678 7.8870508007425855 0 0 0 0 0 1.154901959985743 0 0 [YE]{I|L}H 1.7881 - 66 NaN NaN 105907.3 NaN 12299 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15536 67.13 NaN 177430 35 0 11552 0.261 + 31804 VYMDWYEKF 9 55 648.7841424681742 NaN 0 648.7838745117188 PEAK HCD FTMS 0 0 0 15530 61224.77734375 0.6755622601315527 15 -0.386993408203125 6 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 49.52724829834842 0.0477210396783803 1 TKEYWD{M(Oxidation (M))|F} 7 7 49.83 0 0 3.8463 0 0 64.00038023879763 259.10886560611567 323.1092458449133 0 0 0 0 0 2.579689690656103 0 0 0 TKEYWD{M(Oxidation (M))|F} 3.8463 - 119 + NaN NaN 108157 NaN 12300 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15537 67.134 NaN 97114 35 0 6760.1 0.264 + 21803 QALLDLHAL 9 44 497.28988401852934 992.5652151038587 2 497.2903747558594 MULTI HCD FTMS 0 0 0 15530 38102.67578125 0.286304383915858 6 -0.16391754150390625 7 Unmodified _QALLDLHAL_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 4.3292370932331545 0.3181982124262546 1 {I|L}D 2 7 10.969 0 0 1.1051 0 0 312.17997448061493 449.25104982789026 761.4310243085051 0 0 0 0 0 0 0 0 0 + {I|L}D 1.1051 + + 9 + NaN NaN 92780.1 NaN 12301 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15538 67.137 NaN 126120 35 0 7948.5 0.261 + 1496 AYTSQFVSL 9 58 508.25797159087426 1014.5013902485485 2 508.25897216796875 MULTI HCD FTMS 0 0 0 15530 25357.982421875 0.4615121652315661 3 -0.0887451171875 8 Unmodified _AYTSQFVSL_ ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1 5.731851221503515 0.3075653528928475 1 V{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 4 6 17.703 0 0 1.745 0 0 550.2378537268673 0 550.2378537268673 0 8.239087409443187 0 0 0 0.8494850021680094 0 0 0 V{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 1.745 - 26 + NaN NaN 101157.9 NaN 12302 3234 15530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15540 67.142 NaN 3612600 35 0 592070 0.327 + 27119 SYMGHFDLL 9 97 541.7524296466896 1081.4903063601791 2 541.7529296875 MULTI HCD FTMS 0 0 0 15539 2298540.75 0.4635268697638626 1 -0.0362091064453125 1 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 149.9946105101851 8.83195450578534E-06 1 SYMGH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 94.329 0 0 8.7221 8.7221 96.746 0 0 0 54.28695477621814 9.009461452434238 9.009461452434238 33.96668547897406 0 2.5356668758921828 2 1.6610892374447825 0 + + SYMGH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}MGH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{M(Oxidation (M))|F}D{I|L}{I|L};SY[YV]{[HG]|PP}P{I|L}{M(Oxidation (M))|F};SY[YV]{I|L}GHP{M(Oxidation (M))|F};SY[YV]{[HG]|PP}{I|L}P{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]C{M(Oxidation (M))|F}{I|L};SY[YV][YR][MT];{[{M(Oxidation (M))|F}C]|[YS]}M[YR]SY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}VHG[{M(Oxidation (M))|F}E]S 8.7221;5.5814;4.9155;4.5379;4.0968;3.8433;3.2652;3.1888;2.6568;2.3817 +;+;-;-;-;-;-;-;-;- + 2463 + NaN NaN 441377.7 NaN 12303 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15541 67.146 NaN 1124100 35 0 64019 0.261 + 27184 SYNNFFRMF 9 99 621.2738121112648 1240.5330712893294 2 621.2740478515625 MULTI HCD FTMS 0 0 0 15539 587557.5625 0.11624517246472107 37 -0.9382247924804688 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 140.63315402491853 1.8728231636916273E-05 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 106.11 0 0 8.5533 8.5533 92.342 0 0 0 80.60882038954973 10.642492736872597 10.642492736872597 9.208187539523749 0 2.7856668758921828 2 0 0.7614393726401688 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT] 8.5533;7.811;7.811;7.3147;7.0722;6.5724;6.5724;6.4263;5.684;5.6666 +;-;-;+;-;-;-;-;-;- + 2296 + NaN NaN 267005.1 NaN 12304 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15542 67.15 NaN 1350000 35 0 231420 0.263 + 14230 LAYHLAVVL 9 79 499.80521744062196 997.5958819480439 2 499.8055419921875 MULTI HCD FTMS 0 0 0 15539 343906.78125 0.4555726487602813 1 -0.0362091064453125 3 Unmodified _LAYHLAVVL_ ENSG00000132517|ENST00000254853|SLC52A1;ENSG00000185803|ENST00000643944|SLC52A2;ENST00000573674.1_1_17:4936254-4937771:-|nuORF;ENST00000575919.1_1_17:4936703-4937901:-|nuORF 45.7499826716795 0.03894913563566938 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]AVV{I|L} 9 2 + 44.319 0 0 4.4426 4.4426 83.609 0 0 0 9.154237220656682 23.367669208066975 9.154237220656682 6.98970004336018 0 0.9247425010840047 1.3010299956639813 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]AVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]AV{I|L}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]G{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]G{I|L}{I|L}V;[{I|L}A]Y[H{I|L}]AVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]GV{I|L}{I|L};[{I|L}A]Y[H{I|L}]AV{I|L}V;[{I|L}A]Y[H{I|L}]G{I|L}V{I|L};[{I|L}A]Y[H{I|L}]G{I|L}{I|L}V;[{I|L}A]Y[H{I|L}]GV{I|L}{I|L} 4.4426;3.742;3.5386;2.8379;2.7638;2.4339;2.0632;1.8598;1.1591;0.75508 -;-;-;-;+;-;-;-;-;- + 346 NaN NaN 282821.6 NaN 12305 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15543 67.153 NaN 960720 35 0 79143 0.261 + 29189 TYKDYVDLF 9 99 582.2847126465161 1162.5548723598322 2 582.2852172851562 MULTI HCD FTMS 0 0 0 15539 275435.84375 0.47864416355804945 1 -0.0362091064453125 4 Unmodified _TYKDYVDLF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 79.59630418116434 0.005983006570063981 1 [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F} 9 0 + 78.497 0 0 6.7521 6.7521 91.009 0 0 0 21.12704280191288 50.74871581090916 21.12704280191288 12.513487579716767 0 1.916386562212267 1.6989700043360187 0.5994850021680094 0.6505149978319906 + + [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{M(Oxidation (M))|F}{I|L};[YT][Q{I|L}][YT]D{I|L}{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}V[{M(Oxidation (M))|F}E]V;[YT][Q{I|L}][YT]D{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}TEK[YT]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}TE[YT]K{M(Oxidation (M))|F};[Q{I|L}][YT][YT]D{I|L}{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P][YT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}TEK{M(Oxidation (M))|F}[YT] 6.7521;5.6757;4.3229;3.8473;3.2465;2.9741;2.7544;2.2186;1.8861;1.7068 +;-;-;-;-;-;-;-;-;- + 1257 NaN NaN 235347.7 NaN 12306 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15544 67.157 NaN 344390 35 0 50434 0.261 + 10115 IFIQNSKLYF 10 66 636.8528552413194 1271.6911575494387 2 636.8530883789062 MULTI HCD FTMS 0 0 0 15539 122634.8203125 0.40443714154681726 1 -0.0362091064453125 5 Unmodified _IFIQNSKLYF_ ENSG00000138459|ENST00000492406|SLC35A5 59.368380827593164 0.04371880213842136 1 {I|L}Y{M(Oxidation (M))|F} 3 7 31.198 0 0 2.4533 0 0 830.4684925763687 0 830.4684925763687 0 -1.1966623150499345 -1.1966623150499345 0 0 0.5 0 0 0 + {I|L}Y{M(Oxidation (M))|F} 2.4533 + + 89 NaN NaN 144258.6 NaN 12307 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15545 67.16 NaN 949750 35 0 98107 0.261 + 13340 KYMDVQFDF 9 84 596.77074268441 1191.52693243562 2 596.7708129882812 MULTI HCD FTMS 0 0 0 15539 333040.21875 0.14134976276373748 -6 0.170257568359375 6 Unmodified _KYMDVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 97.74103586103693 0.004323122048066454 1 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 94.294 0 0 7.9137 7.9137 91.301 0 0 0 7.504311474114331 71.67403451429223 7.504311474114331 9.208187539523749 0 2.7302046884880937 0 0.9361818737241735 1.079689690656103 + + [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}V{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}QV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}V{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 7.9137;7.1409;6.8346;6.0618;5.9633;5.8772;5.8487;5.8317;5.2478;5.1037 +;-;-;-;-;-;-;-;-;- + 1251 NaN NaN 229286.1 NaN 12308 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15546 67.163 NaN 523130 35 0 58962 0.261 + 5174 FFDAELSQM 9 81 552.2390895993532 1102.4636262655063 2 552.7408447265625 MULTI HCD FTMS 0 0 0 15539 81378.7734375 0.042989212882219775 73 -1.9179153442382812 7 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 82.5293158979368 0.005033931517079822 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 74.109 0 0 6.7221 6.7221 89.265 0 0 0 5.6424927368725974 49.952359395051715 5.6424927368725974 9.208187539523749 0 2.274227503252014 0 1.055462187404089 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SM[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}MS[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP] 6.7221;5.8869;4.9319;3.3641;1.3243 +;-;-;-;- + 608 NaN NaN 158225 NaN 12309 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15547 67.167 NaN 111980 35 0 33519 0.261 + 5326 FFLVGELKP 9 48 525.3062732471111 NaN 0 525.2883911132812 PEAK HCD FTMS 0 0 0 15539 7621.873046875 0.3586172793399029 1 -0.0362091064453125 8 Unmodified _FFLVGELKP_ ENST00000499247.2_1_17:48941386-48941458:-|nuORF 2.0597508629832335 0.2852655770354268 1 N 1 9 4.6041 0 0 0.43907 0 0 652.397719978794 279.1306551568969 931.528375135691 0 0 0 0 0 0 0 0 0 N 0.43907 - 1 + NaN NaN 93487.7 NaN 12310 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15548 67.17 NaN 209450 35 0 10831 0.261 -1 DYILNVMKF 9 63 579.796843480503 1157.5791340278058 2 579.294189453125 MULTI HCD FTMS 0 0 0 15539 36422.9921875 0.22699304688358135 13 -0.33760833740234375 9 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 29.081581746732265 0.1154664336125038 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}[KT]{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F} 10 -1 + 43.539 0 0 3.7613 3.7613 85.973 0 0 0 27.08581403802212 3.300756084811809 3.300756084811809 11.822785365147212 0 0.9436726795685342 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}[KT]{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}[VG]GY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV]N{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VG]{I|L}GY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]D{I|L}[VG]GY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV]GG{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]D[YV]N{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]D[VG]{I|L}GY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VG][YG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]D[YV]GG{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.7613;2.7399;2.6057;2.4689;1.8121;1.8102;1.6779;1.541;1.3007;0.88239 -;-;-;-;-;-;-;-;-;- 417 + NaN NaN 115243 NaN 12311 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15549 67.173 NaN 187280 35 0 43640 0.264 + 7660 FYIWRPLRI 9 47 421.91650847376906 1262.7276960215072 3 421.9167175292969 MULTI HCD FTMS 0 0 0 15539 37218.921875 0.21061090319299508 11 -0.27495574951171875 10 Unmodified _FYIWRPLRI_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 7.608950283845883 0.29333554423920943 1 YE 2 8 25.217 0 0 1.997 0 0 952.596842517597 0 952.596842517597 0 10.612431371158735 0 0 0 0.4247425010840047 0 0 0 YE 1.997 - 8 NaN NaN 110477.2 NaN 12312 3235 15539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15551 67.178 NaN 1196900 35 0 238790 0.327 -1 TAMDVVYAL 9 80 499.7466991268183 997.4788453204367 2 499.74700927734375 MULTI HCD FTMS 0 0 0 15550 375327.875 0.41280905362812675 13 -0.321258544921875 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 36.04419817259434 0.08350412372117409 1 VYA{I|L} 4 -1 37.652 0 0 3.7747 0 0 533.2152678857362 0 533.2152678857362 0 17.730012720637372 0 0 0 1.3494850021680094 0 0 0 VYA{I|L} 3.7747 + + 312 NaN NaN 253288.2 NaN 12313 3236 15550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15552 67.183 NaN 1487100 35 0 212430 0.261 + 5945 FPDPNVKYVF 10 106 613.3165422889869 1224.6185316447736 2 613.332763671875 MULTI HCD FTMS 0 0 0 15550 219905.90625 0.1675032479542292 22 -0.5599899291992188 2 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 26.120906184454547 0.2667858735782719 1 YYTE{I|L}KY 7 8 41.832 0 0 3.4159 0 0 0 261.1239566084475 261.1239566084475 2.0509164228652565 0 0 0 0 0.6549471895720985 1.5228787452803376 0.2614393726401688 0 YYTE{I|L}KY 3.4159 - 2004 NaN NaN 326268.7 NaN 12314 3236 15550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15553 67.186 NaN 803860 35 0 46625 0.261 + 24938 RYSVFFQSL 9 99 573.7982647685991 1145.581976603998 2 573.7972412109375 MULTI HCD FTMS 0 0 0 15550 263865.96875 0.08178203338711787 14 -0.35446929931640625 3 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 69.33821966488729 0.009302356455414924 1 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 9 3 + 79.954 0 0 6.9794 6.9794 86.699 0 0 0 11.470062510727402 4.71184865248037 4.71184865248037 3.9608280609188284 0 2.2034021960761265 1.154901959985743 0.3807196863200844 0.5451140161145328 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[AG]{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{[MG]|[TS]}SS{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[YK]{I|L}T[RD]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}[RD]G{M(Oxidation (M))|F} 6.9794;6.6336;6.1756;5.8298;5.2742;4.9718;4.9224;4.4643;4.387;4.1758 -;-;-;-;-;-;-;-;-;- 3717 NaN NaN 210944.4 NaN 12315 3236 15550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15554 67.19 NaN 257770 35 0 49244 0.261 + 22113 QIIEADEVL 9 59 515.2766172926675 1028.538681652135 2 515.2767333984375 MULTI HCD FTMS 0 0 0 15550 162206.3125 0.4410340070854644 2 -0.0491790771484375 4 Unmodified _QIIEADEVL_ ENSG00000155876|ENST00000380527|RRAGA 26.268140514670165 0.13340543277302316 1 EV{I|L} 3 6 39.693 0 0 3.8591 0 0 669.333787986525 0 669.333787986525 0 32.70303756120384 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + EV{I|L} 3.8591 + + 80 NaN NaN 129141.8 NaN 12316 3236 15550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15555 67.193 NaN 238690 35 0 20918 0.261 -1 MRFPRCTF 8 78 557.7683177461456 NaN 0 557.782470703125 PEAK HCD FTMS 0 0 0 15550 16657.400390625 0.6630667768177139 -1 0.0362091064453125 5 Carbamidomethyl (C) _MRFPRC(Carbamidomethyl (C))TF_ ENST00000378567.7_1_1:2116514-2116796:+|nuORF 12.531546534597751 0.38822285293237185 1 TW 2 -1 9.068 0 0 0.81436 0 0 131.0333529161539 692.3406466119749 823.3739995281287 0 0 0 0 0 0 0 0.2614393726401688 0 TW 0.81436 - 110 + NaN NaN 119635.2 NaN 12317 3236 15550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15556 67.196 NaN 376180 35 0 65813 0.263 + 24474 RYLDVSILGKF 11 57 437.5866385607105 1309.7380862823316 3 437.922119140625 MULTI HCD FTMS 0 0 0 15550 66658.3828125 0.710902311300094 -4 0.1180267333984375 6 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 22.48609341952514 0.2611603425612102 1 S{I|L}{I|L}[KG]{M(Oxidation (M))|F} 6 5 51.643 0 0 3.943 0 0 646.3444004032107 0 646.3444004032107 0 49.65350013324773 0 0 0 2.4247425010840047 0 0.5 0 + S{I|L}{I|L}[KG]{M(Oxidation (M))|F} 3.943 + + 44 NaN NaN 142153.4 NaN 12318 3236 15550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15558 67.201 NaN 1314400 35 0 113380 0.327 + 13225 KYMDIEFDF 9 108 612.2680883328802 1222.5216237325603 2 612.2686157226562 MULTI HCD FTMS 0 0 0 15557 615548.8125 0.2360728540526765 -12 0.3403167724609375 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 100.0907132914201 0.004261551473353346 1 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F} 9 5 + 82.461 0 0 6.7452 6.7452 87.958 0 0 0 9.866261275826318 10.964015683995783 9.866261275826318 7.95371572735597 0 1.6989700043360187 1.5228787452803376 1.3129529932484498 0 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;[YK]{M(Oxidation (M))|F}{[ET]|[MV]}T[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}YY{M(Oxidation (M))|F} 6.7452;6.0946;5.9381;2.0954;0.99256;0.97705;0.29989;0.0082227 -;-;+;-;-;-;-;- + 3243 NaN NaN 282135.4 NaN 12319 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15559 67.206 NaN 821640 35 0 153790 0.261 + 29781 VEEGCEDRIL 10 80 581.7739321607121 1161.533311388224 2 581.7745361328125 MULTI HCD FTMS 0 0 0 15557 425169.59375 0.36475507405166924 -4 0.12154388427734375 2 Unmodified _VEEGCEDRIL_ ENSG00000165983|ENST00000535784|PTER;nc|ENSG00000165983|Q96BW5-2|PTER 18.1463463914782 0.3413772152514074 1 {I|L}DVNYD{I|L}{M(Oxidation (M))|F} 8 8 38.141 0 0 3.2837 0 0 164.05651803060533 0 164.05651803060533 0 18.677222137369185 0 0 0 0.3182503180159344 0 0.3494850021680094 0.3494850021680094 {I|L}DVNYD{I|L}{M(Oxidation (M))|F} 3.2837 - 441 + NaN NaN 212598.7 NaN 12320 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15560 67.209 NaN 275810 35 0 27710 0.261 -1 FPAGYMYPSM 10 57 590.2457738184258 1178.4769947036516 2 590.2465209960938 MULTI HCD FTMS 0 0 0 15557 68801.0859375 0.3160994537478177 69 -1.7928848266601562 3 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 25.399314129420986 0.2735354021946395 1 MEHVWYP 7 -1 48.492 0 0 4.1148 0 0 0 233.06099878482658 233.06099878482658 36.29615981915208 0 0 0 0 0.5 0 0.3807196863200844 0 MEHVWYP 4.1148 - 357 + NaN NaN 118991.4 NaN 12321 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15561 67.213 NaN 300880 35 0 54793 0.263 -1 0 53 467.2706223900158 1398.7900377702474 3 467.60504150390625 MULTI HCD FTMS 0 0 0 15557 51720.47265625 0.08202004656799414 19 -0.4840240478515625 4 NaN NaN 1 [YN]{I|L} 3 -1 40.7 0 0 2.9096 0 0 0 1005.5770724316423 1005.5770724316423 33.53286222516239 0 0 0 0 1 2 0 0.3252574989159953 [YN]{I|L} 2.9096 - 51 NaN NaN 125781.1 NaN 12322 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15562 67.216 NaN 176930 35 0 37284 0.261 -1 0 56 456.5784833434032 1366.7136206304097 3 456.9132080078125 MULTI HCD FTMS 0 0 0 15557 19706.890625 0.009235784881455978 72 -1.894866943359375 5 NaN NaN 1 W 1 -1 21.99 0 0 1.6089 0 0 1162.623835939783 0 1162.623835939783 0 18.494850021680094 0 0 0 0.5 0 0 0 W 1.6089 - 14 + NaN NaN 103506.2 NaN 12323 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15563 67.219 NaN 190850 35 0 16808 0.261 + 19252 NLEDDEYL 8 55 505.71899403974226 1009.4234351462845 2 505.7189636230469 MULTI HCD FTMS 0 0 0 15557 10605.470703125 0.1008614082776181 3 -0.07517242431640625 6 Unmodified _NLEDDEYL_ tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1 7.289230182591677 0.5311777711368266 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.534 0 0 844.3447435953065 0 844.3447435953065 0 0.5360498482393439 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.534 - 20 + NaN NaN 121192.2 NaN 12324 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15564 67.223 NaN 102070 35 0 8685.7 0.261 + 22288 QPEAPWTL 8 57 471.23810427493436 NaN 0 471.2392578125 PEAK HCD FTMS 0 0 0 15557 10229.91015625 0.46318286614425014 1 -0.0261688232421875 7 Unmodified _QPEAPWTL_ ENSG00000180900|ENST00000356994|SCRIB;nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB 7.910154910731844 0.38822285293237185 1 V 1 8 5.4846 0 0 0.58318 0 0 64.08102863047516 774.2919165007056 838.3729451311808 0 0 0 0 0 0 0 0 0 V 0.58318 - 7 + NaN NaN 95711.7 NaN 12325 3237 15557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15566 67.227 NaN 1336900 35 0 232870 0.327 + 13994 KYSPFVVSF 9 92 537.2870220359804 1072.5594911387607 2 537.2872924804688 MULTI HCD FTMS 0 0 0 15565 379391.15625 0.11529798340068449 10 -0.25222015380859375 1 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 86.33184430468982 0.004622086694044132 1 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 64.562 0 0 6.0194 6.0194 85.882 0 0 0 28.978174818886373 10.241297961327916 10.241297961327916 6.150158783095634 0 2.774227503252014 0 0.8737125054200234 0 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]N[YV]VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]GG[YV]VVS{M(Oxidation (M))|F};[YK][{I|L}P][YG]VS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Q{I|L}[VG][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[Q{I|L}]S{I|L}[VG][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 6.0194;5.446;4.5875;3.9477;1.7289;0.94421 +;-;-;-;-;- + 630 + NaN NaN 282241.9 NaN 12326 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15567 67.232 NaN 756580 35 0 85017 0.261 + 12750 KYDEIFYNL 9 85 602.7977747539607 1203.5809965747212 2 602.7979736328125 MULTI HCD FTMS 0 0 0 15565 310944.15625 0.04777318629403854 20 -0.5108108520507812 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 90.13494162714682 0.004522430935000059 1 {[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L} 9 2 + 76.18 0 0 6.3294 6.3294 83.751 0 0 0 0.4258425654093543 16.47817481888638 0.4258425654093543 0.4258425654093543 0 1.8807196863200843 0 1.3945990182825423 0.2614393726401688 {[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EEK{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};[YV]EKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EK{M(Oxidation (M))|F}YN{I|L} 6.3294;6.294;6.2209;6.1785;6.1452;6.1244;6.0721;5.9756;5.8293;5.6799 -;-;-;-;-;-;-;-;-;- 4350 NaN NaN 203529.6 NaN 12327 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15568 67.235 NaN 482370 35 0 35105 0.261 + 29251 TYLNYVVHL 9 89 561.3021534342066 1120.5897539352131 2 561.2886962890625 MULTI HCD FTMS 0 0 0 15565 33182.6328125 0.1537071918954609 4 -0.0980224609375 3 Unmodified _TYLNYVVHL_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 52.268347100219714 0.028397529699942435 1 [YT]{I|L}NYVVH{I|L} 9 0 + 50.372 0 0 4.4951 4.4951 83.424 0 0 0 15.261095254963465 3.2441718555279664 3.2441718555279664 6.399407582191984 0 1.3539171939081172 1.6989700043360187 0 0 + + [YT]{I|L}NYVVH{I|L};{I|L}YTNYVVH{I|L};[YT]{I|L}GGYVVH{I|L};[YT]{M(Oxidation (M))|F}KDVVH{I|L};{I|L}YTGGYVVH{I|L};{M(Oxidation (M))|F}YTKDVVH{I|L};[YT]{I|L}AA[RV]AQE;[YT]{I|L}{[RE]|[WV]}{[NV]|[RG]}N{I|L};[Y{I|L}]{I|L}[HV][KG]YE;[Y{I|L}]TAA[RV]AQE 4.4951;3.9241;3.6734;3.3619;3.1023;2.6232;1.8697;1.7723;0.4337;0.42461 +;-;-;-;-;-;-;-;-;- + 589 + NaN NaN 154187.6 NaN 12328 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15569 67.239 NaN 588160 35 0 149370 0.261 + 30402 VLPARYFYI 9 64 571.323640085992 1140.632727238784 2 571.3235473632812 MULTI HCD FTMS 0 0 0 15565 158844.140625 0.5046074728380779 -3 0.08538818359375 4 Unmodified _VLPARYFYI_ ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103443606-103451020:-|nuORF 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}Y{I|L} 3 6 26.682 0 0 2.3393 0 0 699.4081898419937 0 699.4081898419937 0 3.8560627359831265 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}Y{I|L} 2.3393 + + 104 NaN NaN 173956.2 NaN 12329 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15570 67.242 NaN 274330 35 0 18759 0.261 -1 IPMDDDFQL 9 62 555.2442848258927 1108.4740167185853 2 555.2447509765625 MULTI HCD FTMS 0 0 0 15565 35724.53515625 0.3500353614720171 -3 0.08538818359375 5 Oxidation (M) _IPM(Oxidation (M))DDDFQL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F}Q{I|L} 3 -1 31.198 0 0 2.8145 0 0 702.2541371076187 0 702.2541371076187 0 18.723637474483468 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}Q{I|L} 2.8145 + + 85 NaN NaN 132576.7 NaN 12330 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15571 67.245 NaN 187980 35 0 8917 0.261 + -1 LVLEPDCYIH 10 67 629.8088525076146 1257.603152082029 2 629.8090209960938 MULTI HCD FTMS 0 0 0 15565 43267.95703125 0.23388440449263587 17 -0.427886962890625 6 Carbamidomethyl (C) _LVLEPDC(Carbamidomethyl (C))YIH_ REV__COL16A1|p.E250Rfs*13|1|0.25|ENSG00000084636|chr1:31697080-31697081|-/G|frameshift_variant;REV__ENSG00000084636|ENST00000373672|COL16A1;REV__nc|ENSG00000084636|Q07092-2|COL16A1 7.289230182591677 0.43672065049472153 1 HY 2 -1 26.454 0 0 2.1035 0 0 0 954.4846561769955 954.4846561769955 0.2557626122369072 0 0 0 0 0 1.3979400086720375 0 0 HY 2.1035 - 75 + NaN NaN 116201.6 NaN 12331 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15572 67.249 NaN 356640 35 0 43397 0.261 -1 SFKTTSPEKM 10 70 586.288574706951 NaN 0 586.3048095703125 PEAK HCD FTMS 0 0 0 15565 21966.2578125 0.6015196083517594 3 -0.06850433349609375 7 Oxidation (M) _SFKTTSPEKM(Oxidation (M))_ ENSG00000178177|ENST00000635767|LCORL 16.149105407346934 0.31182886977857566 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.59712 0 0 378.18065175589555 642.3276461236936 1020.5082978795892 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.59712 + + 359 + NaN NaN 141206.1 NaN 12332 3238 15565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15574 67.254 NaN 676220 35 0 91932 0.326 + 29262 TYLPAPEGLKF 11 73 618.3371881569985 1234.659823380797 2 618.3372802734375 MULTI HCD FTMS 0 0 0 15573 220114.875 0.25574399327976693 5 -0.1041717529296875 1 Unmodified _TYLPAPEGLKF_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 32.037481411007896 0.18823118669267547 1 [YT]{I|L}[PA]T{I|L}VV 9 5 50.328 0 0 4.0762 0 0 0 274.08286462955317 274.08286462955317 33.78530614985209 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 [YT]{I|L}[PA]T{I|L}VV 4.0762 - 379 + NaN NaN 198764.6 NaN 12333 3239 15573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15575 67.258 NaN 766710 35 0 48932 0.261 + 24939 RYSVFFQSL 9 111 573.7982647685991 1145.581976603998 2 573.7994384765625 MULTI HCD FTMS 0 0 0 15573 193217 0.05988524863518897 17 -0.43166351318359375 2 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 61.08992128646608 0.016056751534446034 1 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 9 3 + 64.585 0 0 5.6377 5.6377 86.095 0 0 0 3.6768732281805825 11.475732489984566 3.6768732281805825 8.125818238328677 0 1.8979400086720375 0.7695510786217261 0.3807196863200844 0 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}NT{I|L};{[TV]|[{I|L}S]}Q[WE]RQS{I|L};{[TV]|[{I|L}S]}E[WQ]RQS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGT{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};{[TV]|[{I|L}S]}Q[WE]R[AG]S{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{[TV]|[{I|L}S]}AG{M(Oxidation (M))|F} 5.6377;4.9284;4.8339;4.5293;4.1952;3.858;3.7255;3.5913;3.3914;3.3493 -;-;-;-;-;-;-;-;-;- 5607 NaN NaN 209711.1 NaN 12334 3239 15573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15576 67.262 NaN 439790 35 0 34648 0.261 + 2899 DYSPYFKTI 9 80 567.2791460627044 1132.5437391922087 2 567.2791137695312 MULTI HCD FTMS 0 0 0 15573 200832.03125 0.008145314512302857 155 -4.210914611816406 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.24910588100465 0.021429789259086996 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 59.109 0 0 5.2191 5.2191 85.039 0 0 0 18.979400086720375 7.391915987517095 7.391915987517095 7.391915987517095 0 1.75 2 0.3807196863200844 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[C(Carbamidomethyl (C))K]E[RH] 5.2191;4.5665;3.5433;2.8906;0.027627 +;-;-;-;- + 383 NaN NaN 147908.2 NaN 12335 3239 15573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15577 67.265 NaN 736520 35 0 307640 0.261 + 10778 ISPGRYFLL 9 59 533.308312078647 1064.6020712240938 2 533.3087158203125 MULTI HCD FTMS 0 0 0 15573 240827.1875 0.19033936233830168 -5 0.14110565185546875 4 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 34.93206674587334 0.08860942999206235 1 {I|L}SP 3 6 45.662 0 0 4.2891 0 0 0 764.4108980768186 764.4108980768186 25.885540741363187 0 0 0 0 0.5 1.3979400086720375 0.5 0 + {I|L}SP 4.2891 + + 24 + NaN NaN 191139.7 NaN 12336 3239 15573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15578 67.268 NaN 317010 35 0 43955 0.261 + 23614 RPLDVDWTL 9 70 557.7982009219967 1113.5818489107933 2 557.7982788085938 MULTI HCD FTMS 0 0 0 15573 113722.0546875 0.573740363936949 -5 0.14110565185546875 5 Unmodified _RPLDVDWTL_ ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39 22.65808497894818 0.16459551161911185 1 VDWT{I|L} 5 4 44.196 0 0 3.9688 0 0 481.2650318830094 0 481.2650318830094 0 23.182503180159344 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + VDWT{I|L} 3.9688 + + 236 NaN NaN 125077.7 NaN 12337 3239 15573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15579 67.272 NaN 57760 35 0 4693.6 0.262 + 7668 FYKRKLIIIK 10 41 441.29740960615027 NaN 0 441.2974853515625 PEAK HCD FTMS 0 0 0 15573 11372.693359375 0.2561460465842217 -17 0.4810333251953125 6 Unmodified _FYKRKLIIIK_ REV__ENSG00000162753|ENST00000367714|SLC9C2 0.13989180515190558 0.34006456103295546 1 R 1 -1 6.9897 0 0 0.79376 0 0 130.19447633945055 591.256018449055 721.4504947885055 0 0 0 0 0 0 0 0 0 R 0.79376 + + 5 + NaN NaN 91343.8 NaN 12338 3239 15573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15581 67.276 NaN 1639800 35 0 256620 0.327 + 27120 SYMGHFDLL 9 101 541.7524296466896 1081.4903063601791 2 541.7527465820312 MULTI HCD FTMS 0 0 0 15580 926801.125 0.1868999818101447 6 -0.14056396484375 1 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 88.95385435242217 0.004553379958619559 1 SYMGH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 80.494 0 0 7.4429 7.4429 94.258 0 0 0 38.367199443912156 9.009461452434238 9.009461452434238 26.220454731232742 0 2.473197507588033 2 0.7302046884880937 0 + + SYMGH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}MGH{M(Oxidation (M))|F}D{I|L}{I|L};SY[YV]{[HG]|PP}P{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{M(Oxidation (M))|F}D{I|L}{I|L};SY[YV][YR][MT];{[{M(Oxidation (M))|F}C]|[YS]}M[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YR]MSY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}KK[MT];{[{M(Oxidation (M))|F}C]|[YS]}M[YR]{I|L}SY;{[{M(Oxidation (M))|F}C]|[YS]}[YR]{I|L}MSY 7.4429;5.0184;4.3502;4.0963;2.6539;2.2145;1.8677;1.4597;1.2162;1.0941 +;+;-;-;-;-;-;-;-;- + 1203 + NaN NaN 347090.3 NaN 12339 3240 15580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15582 67.281 NaN 914660 35 0 52621 0.261 + 27185 SYNNFFRMF 9 100 621.2738121112648 1240.5330712893294 2 621.2742919921875 MULTI HCD FTMS 0 0 0 15580 465511.125 0.09209892691981363 42 -1.085235595703125 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 133.0521902211835 0.0004198702180815479 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 94.236 0 0 7.5964 7.5964 90.82 0 0 0 15.642492736872597 78.03781560677692 15.642492736872597 9.208187539523749 0 3 0 1 1.916386562212267 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[YC]|[HE]}[DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[HQ]QE[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HM]E[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}N[HM]E[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[QA]{[ES]|[DT]|[{I|L}C]}ER{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RP][MT] 7.5964;6.8541;6.6079;5.2198;4.263;3.4671;3.3206;2.8317;2.6933;2.078 +;-;-;-;-;-;-;-;-;- + 1932 NaN NaN 223799.1 NaN 12340 3240 15580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15583 67.284 NaN 427440 35 0 41488 0.262 + 15991 LPQPTEINL 9 81 512.7893080540243 1023.5640631748487 2 512.7871704101562 MULTI HCD FTMS 0 0 0 15580 92771.875 0.4353746804112705 6 -0.14056396484375 3 Unmodified _LPQPTEINL_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-4|MTRF1L 41.95555342248728 0.056367691549927025 1 E{I|L}N{I|L} 4 5 36.547 0 0 3.5706 0 0 536.29594618965 0 536.29594618965 0 7.725132373774365 0 0 0 0.9247425010840047 0 0 0.28872548999643577 + E{I|L}N{I|L} 3.5706 + + 853 NaN NaN 141537.8 NaN 12341 3240 15580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15584 67.288 NaN 255880 35 0 13034 0.261 + 2106 DFEIDMYK 8 76 530.7356657909717 NaN 0 530.7696533203125 PEAK HCD FTMS 0 0 0 15580 9540.4501953125 0.3329127434078859 -5 0.13439178466796875 4 Unmodified _DFEIDMYK_ REV__ENSG00000128641|ENST00000392318|MYO1B;REV__ENSG00000166866|ENST00000300119|MYO1A;REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF;REV__nc|ENSG00000128641|O43795-2|MYO1B 8.593279151180031 0.38822285293237185 1 E 1 -1 7.3464 0 0 0.69341 0 0 668.3198290411245 259.07278389197586 927.3926129331004 0 0 0 0 0 0 0 0.4247425010840047 0 E 0.69341 + + 69 + NaN NaN 128652.2 NaN 12342 3240 15580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15585 67.291 NaN 631030 35 0 72600 0.261 + 20005 NYIGISLRI 9 69 524.8111696594632 1047.6077863857263 2 524.8106689453125 MULTI HCD FTMS 0 0 0 15580 128871.9375 0.28810875511633993 -4 0.09818267822265625 5 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 93.93812099017352 0.0044227730261779084 1 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 101.13 0 0 9.6534 9.6534 91.023 0 0 0 21.51121149559691 16.478174818886373 16.478174818886373 5.044321917401078 0 2.6861818737241734 1.6989700043360187 0.4247425010840047 1.4436726795685342 + + [YN]{I|L}G{I|L}S{I|L}R{I|L};[YN]{I|L}G{I|L}SR{I|L}{I|L};[{I|L}T]AA{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}R{I|L};[{I|L}T]AA{[CT]|[{M(Oxidation (M))|F}G]}SR{I|L}{I|L};[{I|L}T]AA[YQ]{I|L}R{I|L};[{I|L}T]AA[YQ]R{I|L}{I|L} 9.6534;9.1718;2.8961;2.4146;2.1289;1.6474 +;-;-;-;-;- + 353 NaN NaN 198671.8 NaN 12343 3240 15580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15587 67.296 NaN 3055400 35 0 341550 0.326 + 13341 KYMDVQFDF 9 104 596.77074268441 1191.52693243562 2 596.7711181640625 MULTI HCD FTMS 0 0 0 15586 2356142.75 1 0 0 1 Unmodified _KYMDVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 163.68669969883206 7.261465303366562E-09 1 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 106.27 0 0 8.9187 8.9187 90.522 0 0 0 5.568109453757657 16.478174818886373 5.568109453757657 5.568109453757657 0 2.7302046884880937 0 1.6382104921644451 1.7000612056866313 + + [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.9187;8.4513;8.2121;8.1458;7.8922;7.6785;7.4393;7.306;7.1626;7.1194 +;-;-;-;-;-;-;-;-;- + 6684 NaN NaN 522567.7 NaN 12344 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15588 67.3 NaN 711170 35 0 196840 0.262 + 15536 LPDPQNISL 9 64 498.77181118435016 995.5290694355003 2 498.771728515625 MULTI HCD FTMS 0 0 0 15586 442327.8125 0.7211628651785975 -4 0.09467315673828125 2 Unmodified _LPDPQNISL_ ENSG00000198860|ENST00000645668|TSEN15;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF 38.61474834105838 0.07170385841135779 1 N{I|L}S{I|L} 4 5 55.433 0 0 5.5682 0 0 550.2752792974073 0 550.2752792974073 0 41.938200260161125 0 0 0 1.5 0 0.4247425010840047 0.4247425010840047 + N{I|L}S{I|L} 5.5682 + + 76 NaN NaN 191977.6 NaN 12345 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15589 67.304 NaN 447940 35 0 34318 0.261 -1 0 70 604.7680411660131 1207.521529398826 2 604.7681884765625 MULTI HCD FTMS 0 0 0 15586 170505.8125 0.053502182924473965 81 -2.1621780395507812 3 NaN NaN 1 DQPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 51.931 0 0 4.3006 0 0 312.14695937324376 0 312.14695937324376 0 31.864269272909738 0 0 0 0.5 0 0.3494850021680094 0.3494850021680094 DQPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.3006 - 1572 NaN NaN 147749.8 NaN 12346 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15590 67.307 NaN 391420 35 0 33699 0.262 + 15992 LPQPTEINL 9 74 512.7893080540243 1023.5640631748487 2 513.2929077148438 MULTI HCD FTMS 0 0 0 15586 181755.59375 0.8000376072128819 -3 0.06850433349609375 4 Unmodified _LPQPTEINL_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-4|MTRF1L 38.61474834105838 0.07170385841135779 1 AH[TP]E{I|L}N{I|L} 8 3 34.708 0 0 3.3909 0 0 130.09020714117554 0 130.09020714117554 0 18.254340747697526 0 0 0 1.7786596949921218 0 0.3494850021680094 0.9604093769761874 AH[TP]E{I|L}N{I|L} 3.3909 - 378 + NaN NaN 137268.9 NaN 12347 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15591 67.311 NaN 483000 35 0 56982 0.261 + 5175 FFDAELSQM 9 69 552.2390895993532 1102.4636262655063 2 552.2391967773438 MULTI HCD FTMS 0 0 0 15586 148615.34375 0.0432284457291411 81 -2.1621780395507812 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 106.94017166704063 0.003441928997083001 1 MYDAE{I|L}SQ{M(Oxidation (M))|F} 9 2 + 87.133 0 0 7.9035 7.9035 88.845 0 0 0 71.6482846226927 8.952877223150395 8.952877223150395 5.300084529637985 0 2.9489700043360187 0 0.8252574989159953 0.3807196863200844 MYDAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};MYDAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[SG]M;{[QV]|[N{I|L}]|[RA]|[KV]}{[YC]|[HE]}EADE{M(Oxidation (M))|F};MYDAE{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[{I|L}T];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP];[YV]{M(Oxidation (M))|F}AAAADE{M(Oxidation (M))|F} 7.9035;7.4227;6.7229;6.5875;6.112;3.2726;2.6438;1.8448;1.6801 -;+;-;-;-;-;-;-;- + 710 + NaN NaN 178536.3 NaN 12348 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15592 67.314 NaN 186010 35 0 14198 0.261 + -1 RQCCVAAEDF 10 46 628.2626767847519 1254.5108006363037 2 628.2620849609375 MULTI HCD FTMS 0 0 0 15586 64187.40625 0.35632790889511295 -11 0.291351318359375 6 2 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))C(Carbamidomethyl (C))VAAEDF_ REV__ENSG00000160360|ENST00000440944|GPSM1;REV__nc|ENSG00000160360|Q86YR5-3|GPSM1;REV__nc|ENSG00000160360|Q86YR5-4|GPSM1;REV__nc|ENSG00000160360|Q86YR5|GPSM1 5.296884461304476 0.4472664531305844 1 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.6816 0 0 698.2884999005875 0 698.2884999005875 0 35.70107520596089 0 0 0 1.4247425010840047 0 0 0 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.6816 - 123 NaN NaN 113397.6 NaN 12349 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15593 67.317 NaN 372510 35 0 93915 0.261 -1 AYPPAPFMHIL 11 60 636.8260658958287 1271.6375788584573 2 636.8260498046875 MULTI HCD FTMS 0 0 0 15586 60959.1484375 0.6614551490916021 -7 0.18341827392578125 7 Oxidation (M) _AYPPAPFM(Oxidation (M))HIL_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 15.847184025352803 0.3190053777784024 1 {I|L}Y{M(Oxidation (M))|F} 3 -1 23.812 0 0 1.8726 0 0 830.4710560529312 0 830.4710560529312 0 12.245462655597093 0 0 0 0 0 0 0 {I|L}Y{M(Oxidation (M))|F} 1.8726 - 27 NaN NaN 158612.1 NaN 12350 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15594 67.32 NaN 126470 35 0 11220 0.264 -1 0 48 451.08850141115545 NaN 0 451.08837890625 PEAK HCD FTMS 0 0 0 15586 8748.3037109375 0.2794871153296335 -1 0.019500732421875 8 NaN NaN 1 {I|L}S 2 -1 6.757 0 0 0.75064 0 0 534.9673032600078 162.05620752506096 697.0235107850688 0 0 0 0 0 0 0 0.25 0 {I|L}S 0.75064 - 7 + NaN NaN 96466.9 NaN 12351 3241 15586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15596 67.325 NaN 1278800 35 0 141840 0.327 + 13712 KYPLLLQSI 9 81 537.8315639754669 1073.6485750177337 2 537.831787109375 MULTI HCD FTMS 0 0 0 15595 283218.34375 0.712746590187267 8 -0.20726776123046875 1 Unmodified _KYPLLLQSI_ ENSG00000076928|ENST00000354532|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 106.94017166704063 0.003441928997083001 1 [YK][{I|L}P]{I|L}{I|L}QS{I|L} 9 0 + 54.807 0 0 5.1048 5.1048 81.949 0 0 0 0.9367923279204646 5.324857350045299 0.9367923279204646 0.9367923279204646 0 2.1549471895720984 0 0.3807196863200844 0.6139829889124311 + + [YK][{I|L}P]{I|L}{I|L}QS{I|L};[Q{I|L}]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}QS{I|L};[YK][{I|L}P]{I|L}{I|L}[AG]S{I|L};[Q{I|L}]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}[AG]S{I|L};[YK][{I|L}P]{I|L}{I|L}{[CP]|[EA]}K;[Q{I|L}]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{[CP]|[EA]}K;[Q{I|L}]S{I|L}{I|L}[{I|L}P]YK;[Q{I|L}]{I|L}S{I|L}[{I|L}P]YK 5.1048;5.0175;4.2471;4.1599;2.8885;2.8013;0.74962;0.28864 +;-;-;-;-;-;-;- + 433 NaN NaN 279537.8 NaN 12352 3242 15595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15597 67.33 NaN 317910 35 0 21346 0.261 + 16496 LTDIFFETL 9 91 549.7903149967343 NaN 0 549.7904663085938 PEAK HCD FTMS 0 0 0 15595 22041.8125 0.05456830809681829 15 -0.3896636962890625 2 Unmodified _LTDIFFETL_ tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1 15.847184025352803 0.21527282152051216 1 VV 2 9 12.959 0 0 1.1807 0 0 131.09124361700952 765.3124483697874 896.403691986797 0 0 0 0 0 0.3494850021680094 0 0 0 VV 1.1807 - 81 + NaN NaN 123009.3 NaN 12353 3242 15595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15598 67.333 NaN 343650 35 0 102650 0.261 -1 AYPPAPFMHIL 11 54 636.8260658958287 1271.6375788584573 2 637.3269653320312 MULTI HCD FTMS 0 0 0 15595 57716.453125 0.6060217233144801 1 -0.01617431640625 3 Oxidation (M) _AYPPAPFM(Oxidation (M))HIL_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 10.823927491677226 0.3627731766506869 1 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.649 0 0 943.5482472944014 0 943.5482472944014 0 12.016675202793719 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.649 - 13 NaN NaN 136677.2 NaN 12354 3242 15595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15599 67.337 NaN 139990 35 0 11723 0.264 + 3979 ERDSDDERPSF 11 55 451.52867570424115 1351.5641977129235 3 451.5290222167969 MULTI HCD FTMS 0 0 0 15595 21385.455078125 0.23919297245784668 -9 0.24573516845703125 4 Unmodified _ERDSDDERPSF_ ENSG00000100109|ENST00000407690|TFIP11;ENST00000479489.5_1_22:26902719-26906244:-|nuORF 1.3296431237094175 0.4130893034510334 1 {I|L}S{M(Oxidation (M))|F} 3 9 18.416 0 0 1.3626 0 0 986.3686848728829 0 986.3686848728829 0 7.447274948966939 0 0 0 0 0 0 0 {I|L}S{M(Oxidation (M))|F} 1.3626 - 14 + NaN NaN 105362.1 NaN 12355 3242 15595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15601 67.342 NaN 2720100 35 0 325270 0.327 + 13226 KYMDIEFDF 9 108 612.2680883328802 1222.5216237325603 2 612.2683715820312 MULTI HCD FTMS 0 0 0 15600 2011461.375 0.7714277372811453 -6 0.1403656005859375 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 84.675 0 0 6.9262 6.9262 85.278 0 0 0 1.2037151503052712 8.88940595354157 1.2037151503052712 1.2037151503052712 0 2.6861818737241734 0 1.700061205686631 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}D{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{I|L}[CG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}C]|[YS]}[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{I|L}Y{M(Oxidation (M))|F}DK{M(Oxidation (M))|F} 6.9262;6.8278;6.6916;6.0745;3.0138;2.7165;2.454;2.0007;1.8708;1.7832 +;-;-;-;-;-;-;-;-;- + 6775 NaN NaN 493211.3 NaN 12356 3243 15600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15602 67.346 NaN 1528600 35 0 368470 0.261 + 3785 EPEDHYFLL 9 82 581.7739321607121 1161.533311388224 2 581.7747192382812 MULTI HCD FTMS 0 0 0 15600 1002055.3125 0.8596681538090495 2 -0.03920745849609375 2 Unmodified _EPEDHYFLL_ ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF 70.71552829651908 0.008856681705782516 1 DHY{M(Oxidation (M))|F}{I|L}{I|L} 6 3 30.818 0 0 2.6532 0 0 355.13597168340806 0 355.13597168340806 0 2.427352624788746 0 0 0 1.3193415193665468 0 0 0 + DHY{M(Oxidation (M))|F}{I|L}{I|L} 2.6532 + + 345 + NaN NaN 311622.2 NaN 12357 3243 15600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15603 67.35 NaN 573390 35 0 91884 0.261 + 11929 KFISTSLLL 9 82 511.31816216765253 1020.6217714021051 2 511.318359375 MULTI HCD FTMS 0 0 0 15600 295995 0.6327629930542533 -2 0.04569244384765625 3 Unmodified _KFISTSLLL_ ENSG00000156234|ENST00000682537|CXCL13;ENST00000506590.1_1_4:78527019-78531849:+|nuORF 67.83816525789305 0.009787749748478139 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}STS{I|L}{I|L}{I|L} 9 0 + 76.169 0 0 7.463 7.463 96.052 0 0 0 4.762036441594191 56.4933840597207 4.762036441594191 76.1688190037372 0 2.548455006504028 0 0.6861818737241735 0 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}STS{I|L}{I|L}{I|L} 7.463 + + 452 NaN NaN 164610.5 NaN 12358 3243 15600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15604 67.353 NaN 196470 35 0 10798 0.261 -1 YHLVCLDPEL 10 68 629.8088525076146 1257.603152082029 2 629.822021484375 MULTI HCD FTMS 0 0 0 15600 46159.8671875 0.24951658893462908 22 -0.55560302734375 4 Carbamidomethyl (C) _YHLVC(Carbamidomethyl (C))LDPEL_ ENSG00000116254|ENST00000262450|CHD5;ENSG00000170004|ENST00000330494|CHD3;ENST00000572579.1_1_17:7796637-7797935:+|nuORF;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 7.289230182591677 0.43672065049472153 1 {I|L}[HQ]WVYY 7 -1 27.211 0 0 2.1637 0 0 0 265.1310213678344 265.1310213678344 4.534794932731714 0 0 0 0 0 0 0 0 {I|L}[HQ]WVYY 2.1637 - 297 + NaN NaN 107491.2 NaN 12359 3243 15600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15606 67.358 NaN 491500 35 0 54360 0.327 + 12751 KYDEIFYNL 9 71 602.7977747539607 1203.5809965747212 2 602.7979736328125 MULTI HCD FTMS 0 0 0 15605 277531.46875 0.04263969041563837 26 -0.6796646118164062 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 63.227496030279354 0.01306643085373406 1 [YV]EEK{M(Oxidation (M))|F}YN{I|L} 9 3 + 68.893 0 0 5.724 5.724 82.834 0 0 0 5.783409326844264 10.669015600442577 5.783409326844264 0.4845500650402812 0 1.8807196863200843 1.2218487496163564 0 0.3252574989159953 [YV]EEK{M(Oxidation (M))|F}YN{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EKE{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EEK{M(Oxidation (M))|F}YGG{I|L};[YV][SG]{I|L}E{M(Oxidation (M))|F}YN{I|L} 5.724;5.6837;5.6434;5.6291;5.2434;5.0595;4.979;4.9647;4.9589;4.9329 -;-;-;-;-;-;-;-;-;- 1015 NaN NaN 159615.8 NaN 12360 3244 15605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15607 67.362 NaN 244800 35 0 18224 0.261 + -1 RQCCVAAEDF 10 49 628.2626767847519 1254.5108006363037 2 628.7640380859375 MULTI HCD FTMS 0 0 0 15605 97474.8203125 0.9406678084257356 1 -0.023040771484375 2 2 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))C(Carbamidomethyl (C))VAAEDF_ REV__ENSG00000160360|ENST00000440944|GPSM1;REV__nc|ENSG00000160360|Q86YR5-3|GPSM1;REV__nc|ENSG00000160360|Q86YR5-4|GPSM1;REV__nc|ENSG00000160360|Q86YR5|GPSM1 8.745405648335112 0.42901288225909884 1 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 51.186 0 0 4.0801 0 0 698.2932237084709 0 698.2932237084709 0 46.5815315012393 0 0 0 1.5 0 0.4247425010840047 0 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.0801 - 82 NaN NaN 122652.7 NaN 12361 3244 15605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15608 67.366 NaN 268250 35 0 45751 0.264 + 24475 RYLDVSILGKF 11 54 437.5866385607105 1309.7380862823316 3 437.92144775390625 MULTI HCD FTMS 0 0 0 15605 63013.94140625 0.6720348544284123 4 -0.121856689453125 3 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 20.410884301107757 0.2792417076485638 1 S{I|L}{I|L}[KG]{M(Oxidation (M))|F} 6 5 42.893 0 0 3.2749 0 0 646.3423329084 0 646.3423329084 0 38.288493772929044 0 0 0 1.5 0 0.4247425010840047 0 + S{I|L}{I|L}[KG]{M(Oxidation (M))|F} 3.2749 + + 41 NaN NaN 125240.8 NaN 12362 3244 15605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15609 67.369 NaN 411610 35 0 26666 0.261 -1 SYMGHFDLL 9 89 549.7497595181673 1097.4849661031344 2 549.7506713867188 MULTI HCD FTMS 0 0 0 15605 65758.859375 0.6899937174436684 10 -0.27411651611328125 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 34.10243960390752 0.09241788333544565 1 [{I|L}T]{I|L}D{I|L}{[QS]|[NT]}{I|L} 8 -1 39.628 0 0 3.6108 0 0 0 210.94829380282025 210.94829380282025 26.528806450206233 0 0 0 0 0 2 0.3252574989159953 0 [{I|L}T]{I|L}D{I|L}{[QS]|[NT]}{I|L} 3.6108 - 410 NaN NaN 143570.2 NaN 12363 3244 15605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15610 67.373 NaN 150340 35 0 11980 0.261 + -1 YCRDCEEMN 9 56 638.7238740442425 1275.433195155285 2 639.2242431640625 MULTI HCD FTMS 0 0 0 15605 23698.68359375 0.5910716643081397 -1 0.01616668701171875 5 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))RDC(Carbamidomethyl (C))EEMN_ REV__nc|ENSG00000105971|P51636-3|CAV2 1.844237919475145 0.33703635659052655 1 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 26.692 0 0 2.0928 0 0 719.2198963849625 0 719.2198963849625 0 20.749985176163186 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.0928 - 23 NaN NaN 96503.4 NaN 12364 3244 15605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15611 67.376 NaN 137560 35 0 8536.4 0.264 + -1 KSCSTNYRCFS 11 59 451.52867570424115 1351.5641977129235 3 451.86383056640625 MULTI HCD FTMS 0 0 0 15605 23429.578125 0.3648622285837859 -7 0.15653228759765625 6 Carbamidomethyl (C) _KSC(Carbamidomethyl (C))STNYRCFS_ REV__ENSG00000137871|ENST00000267807|ZNF280D;REV__nc|ENSG00000285253|Q6N043-2|ZNF280D;REV__nc|ENSG00000285253|Q6N043-4|ZNF280D 2.0839675508343545 0.40978109276162705 1 {I|L}S{M(Oxidation (M))|F} 3 -1 20.177 0 0 1.4929 0 0 986.3681355564767 0 986.3681355564767 0 15.573193899842437 0 0 0 0 0 0 0 {I|L}S{M(Oxidation (M))|F} 1.4929 - 10 + NaN NaN 95268.2 NaN 12365 3244 15605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15613 67.381 NaN 1122100 35 0 168470 0.327 -1 IYNPSMGVSVL 11 102 598.3048634458851 1194.59517395857 2 598.8192749023438 MULTI HCD FTMS 0 0 0 15612 23104.181640625 0.4561538466284458 -1 0.023040771484375 1 Oxidation (M) _IYNPSM(Oxidation (M))GVSVL_ ENSG00000110400|ENST00000264025|NECTIN1;ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-2|NECTIN1;nc|ENSG00000110400|Q15223-3|NECTIN1 16.565877749689598 0.3127433757948945 1 TT{I|L}A{I|L}{[CP]|[EA]}A{M(Oxidation (M))|F}[VP] 11 -1 39.953 0 0 3.3445 0 0 62.983009760414525 0 62.983009760414525 0 13.52623576382183 0 0 0 0 0 0.4247425010840047 0 TT{I|L}A{I|L}{[CP]|[EA]}A{M(Oxidation (M))|F}[VP] 3.3445 - 2043 + NaN NaN 253364.5 NaN 12366 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15614 67.385 NaN 900290 35 0 115600 0.261 + 13995 KYSPFVVSF 9 77 537.2870220359804 1072.5594911387607 2 537.287109375 MULTI HCD FTMS 0 0 0 15612 298411.5625 0.09068806906248839 17 -0.4397735595703125 2 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 67.83816525789305 0.009787749748478139 1 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 57.731 0 0 5.3825 5.3825 89.106 0 0 0 22.874015516889372 5.73576872189598 5.73576872189598 14.669563279175144 0 2.7302046884880937 0 0.535666875892183 0 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[YK][{I|L}P][YG]VS{M(Oxidation (M))|F};[YK][PG][Y{I|L}]VS{M(Oxidation (M))|F};[Q{I|L}]S{I|L}[VG][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 5.3825;4.0148;3.4446;0.91796 +;-;-;- + 537 + NaN NaN 210217.5 NaN 12367 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15615 67.389 NaN 372560 35 0 29309 0.261 -1 0 62 604.7680411660131 1207.521529398826 2 604.7684936523438 MULTI HCD FTMS 0 0 0 15612 154759.890625 0.04856134730064017 85 -2.3079757690429688 3 NaN NaN 1 DQPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 56.516 0 0 4.6803 0 0 312.1468678205094 0 312.1468678205094 0 38.355479375649324 0 0 0 0.5 0 0.3252574989159953 0.3807196863200844 DQPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6803 - 1300 NaN NaN 131411.8 NaN 12368 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15616 67.392 NaN 444140 35 0 107580 0.261 + 30403 VLPARYFYI 9 67 571.323640085992 1140.632727238784 2 571.3235473632812 MULTI HCD FTMS 0 0 0 15612 159576.265625 0.5069332479318144 4 -0.11867523193359375 4 Unmodified _VLPARYFYI_ ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103443606-103451020:-|nuORF 28.486842064014134 0.11819662193267319 1 Y{I|L} 2 7 23.711 0 0 2.0788 0 0 846.4788989120404 0 846.4788989120404 0 7.474250108400469 0 0 0 0.4247425010840047 0 0 0 + Y{I|L} 2.0788 + + 86 NaN NaN 146949.5 NaN 12369 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15617 67.395 NaN 590320 35 0 29170 0.261 + 24940 RYSVFFQSL 9 101 573.7982647685991 1145.581976603998 2 573.7960815429688 MULTI HCD FTMS 0 0 0 15612 92196.9453125 0.028575316837772986 23 -0.6105804443359375 5 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 44.391923383255 0.04518338856193886 1 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 9 3 + 68.98 0 0 6.0214 6.0214 85.777 0 0 0 9.973024840566467 17.737179672681513 9.973024840566467 5.9640156839957825 0 1.8851518780601921 1.3979400086720375 0.3807196863200844 0 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[AG]{I|L};[YR]SV{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};{[TV]|[{I|L}S]}Q[WE]RQS{I|L};[YR]SV{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}[RD]G{M(Oxidation (M))|F};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L} 6.0214;5.5008;5.2176;4.697;4.3746;4.3447;4.1196;3.854;3.8279;3.8241 -;-;-;-;+;-;-;-;-;- + 3480 NaN NaN 173867.6 NaN 12370 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15618 67.399 NaN 440990 35 0 36661 0.261 -1 YMTGLTASLF 10 97 560.2723178317838 1118.5300827303674 2 561.2885131835938 MULTI HCD FTMS 0 0 0 15612 10179.1572265625 0.2928264732967337 -2 0.03920745849609375 6 Oxidation (M) _YM(Oxidation (M))TGLTASLF_ ENSG00000176495|ENST00000641998|OR5AN1 25.399314129420986 0.2735354021946395 1 YGV{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}VG 9 -1 45.06 0 0 4.0285 0 0 0 162.05611597232658 162.05611597232658 18.769636955582094 0 0 0 0 0.3252574989159953 0 0.9489700043360187 0 YGV{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}VG 4.0285 - 837 + NaN NaN 147029.9 NaN 12371 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15619 67.402 NaN 192140 35 0 23832 0.261 + 18031 MLMKKCDQL 9 54 555.2782300068087 NaN 0 555.2973022460938 PEAK HCD FTMS 0 0 0 15612 7686.81689453125 0.44021470986925826 1 -0.036163330078125 7 Unmodified _MLMKKCDQL_ REV__nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L 16.942295170755138 0.2079222001251384 1 Q{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.98951 0 0 131.16094886795457 699.2312014427433 830.3921503106978 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 0.98951 - 13 + NaN NaN 112931.9 NaN 12372 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15620 67.405 NaN 217770 35 0 37045 0.262 + 24476 RYLDVSILGKF 11 49 437.5866385607105 1309.7380862823316 3 437.9206237792969 MULTI HCD FTMS 0 0 0 15612 52725.48046875 0.5623098603378278 5 -0.151885986328125 8 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 10.016264844850085 0.3698103677728216 1 {I|L}[KG]{M(Oxidation (M))|F} 4 7 30.445 0 0 2.3245 0 0 846.4599408714087 0 846.4599408714087 0 23.455612550363796 0 0 0 1.4247425010840047 0 0 0 + {I|L}[KG]{M(Oxidation (M))|F} 2.3245 + + 17 + NaN NaN 118565.6 NaN 12373 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15621 67.409 NaN 216260 35 0 12805 0.261 + -1 HITMCMIMDK 10 61 648.2814667463201 1294.5483805594401 2 648.783203125 MULTI HCD FTMS 0 0 0 15612 24095.666015625 0.49102466661455385 -6 0.1272125244140625 9 Carbamidomethyl (C),Oxidation (M) _HITMC(Carbamidomethyl (C))MIM(Oxidation (M))DK_ REV__ENSG00000103994|ENST00000564754|ZNF106;REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106;REV__nc|ENSG00000103994|Q9H2Y7|ZNF106 5.731851221503515 0.44496410492002586 1 [YV]{M(Oxidation (M))|F}[WD]YEK 8 -1 26.833 0 0 2.0727 0 0 0 161.05567971399014 161.05567971399014 3.557423288775823 0 0 0 0 0 2 0 0 [YV]{M(Oxidation (M))|F}[WD]YEK 2.0727 - 207 NaN NaN 112740.7 NaN 12374 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15622 67.412 NaN 289120 35 0 41281 0.263 -1 LYWVMAFI 8 65 529.7735475982688 1057.5325422633375 2 529.7387084960938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _LYWVM(Oxidation (M))AFI_ ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9 11.114462752807354 0.5120171699125776 1 {M(Oxidation (M))|F}E 2 -1 13.201 0 0 1.2483 0 0 115.12343689400002 663.2820731437685 778.4055100377685 0 0 0 0 0 0.25 0 0.2742275032520141 0 {M(Oxidation (M))|F}E 1.2483 - 56 + NaN NaN 116765.4 NaN 12375 3245 15612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15624 67.417 NaN 2415500 35 0 1069900 0.327 + 10779 ISPGRYFLL 9 77 533.308312078647 1064.6020712240938 2 533.3085327148438 MULTI HCD FTMS 0 0 0 15623 959086.9375 0.7580207118880404 2 -0.062652587890625 1 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 57.72198328787511 0.020768266150574023 1 {I|L}SP{[NV]|[RG]}Y{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 69.307 0 0 6.5101 6.5101 90.54 0 0 0 39.06804392152253 2.9048057571536674 2.9048057571536674 12.474250108400469 0 2.3494850021680094 1.6989700043360187 0.5 0 + + {I|L}SP{[NV]|[RG]}Y{M(Oxidation (M))|F}{I|L}{I|L};{I|L}SP{[NV]|[RG]}Y{I|L}{I|L}{M(Oxidation (M))|F} 6.5101;5.3384 +;- + 337 + NaN NaN 443616.7 NaN 12376 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15625 67.421 NaN 466050 35 0 33211 0.261 + 2900 DYSPYFKTI 9 83 567.2791460627044 1132.5437391922087 2 567.2789306640625 MULTI HCD FTMS 0 0 0 15623 199878.859375 0.008106655914579012 162 -4.426307678222656 2 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.24910588100465 0.021429789259086996 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 62.239 0 0 5.4955 5.4955 88.456 0 0 0 16.365006360318688 11.542045833281222 11.542045833281222 11.542045833281222 0 2.094187677400525 1.6989700043360187 0.3494850021680094 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};[YT][{I|L}T][YT]VSW;{[CT]|[{M(Oxidation (M))|F}G]}SV[YT]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};[YQ]V[YT]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[KA]{[QS]|[NT]}E[RH];{[CT]|[{M(Oxidation (M))|F}G]}SVS[YT]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};[YQ]VS[YT]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 5.4955;4.4763;4.0505;3.0314;2.0345;0.44783;0.40266;0.25343;0.12292;0.077749 +;-;-;-;-;-;-;-;-;- + 529 NaN NaN 152772.1 NaN 12377 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15626 67.425 NaN 1294900 35 0 193610 0.261 -1 PLEEMVPLSH 10 108 584.289645907993 1166.5647388827858 2 585.2979125976562 MULTI HCD FTMS 0 0 0 15623 116977.5 0.023706517658419638 -11 0.27495574951171875 3 Oxidation (M) _PLEEM(Oxidation (M))VPLSH_ ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF;nc|ENSG00000099308|O60307|MAST3 13.90604991867851 0.3810395177745597 1 [{I|L}P]EDWTAN{I|L} 9 -1 45.527 0 0 3.9027 0 0 0 124.04087592010742 124.04087592010742 6.863336299137536 0 0 0 0 0.3054621874040891 1.3979400086720375 1.0189301784845295 0.3054621874040891 [{I|L}P]EDWTAN{I|L} 3.9027 - 6275 NaN NaN 282670.8 NaN 12378 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15627 67.428 NaN 814100 35 0 87646 0.261 + 24308 RYGDLVDYL 9 87 557.2821841152138 1112.5498152972275 2 557.79833984375 MULTI HCD FTMS 0 0 0 15623 125410.8515625 0.6528963014854838 -1 0.036163330078125 4 Unmodified _RYGDLVDYL_ ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant 31.26834338654808 0.10542797264966089 1 {[YD]|[{M(Oxidation (M))|F}M]}[RV]AVDY{I|L} 9 4 + 53.188 0 0 4.7807 4.7807 88.98 0 0 0 8.141267469038596 31.205810038607268 8.141267469038596 20.511525224473814 0 1.2887254899964358 1.3979400086720375 0 0 {[YD]|[{M(Oxidation (M))|F}M]}[RV]AVDY{I|L};[{M(Oxidation (M))|F}T]{[RE]|[WV]}AVDY{I|L};[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}NVDY{I|L};{[QN]|[E{I|L}]|[KN]}[YK]AVDY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[RV]AV[YE]V;[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}GGVDY{I|L};[{M(Oxidation (M))|F}T]{[RE]|[WV]}AV[YE]V;[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}NV[YE]V;{[QN]|[E{I|L}]|[KN]}[YK]AV[YE]V;[KC]W{[QV]|[N{I|L}]|[RA]|[KV]}{[CA]|SS}Y{I|L} 4.7807;2.9371;2.8248;2.8248;2.5336;1.9971;0.68998;0.57768;0.57768;0.57679 -;-;-;-;-;-;-;-;-;- 808 NaN NaN 206314.9 NaN 12379 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15628 67.432 NaN 332180 35 0 42500 0.261 -1 YVVFICCNI 9 64 594.2814063066825 1186.5482596801648 2 595.3023071289062 MULTI HCD FTMS 0 0 0 15623 44185.1484375 0.24815948096454932 19 -0.48023223876953125 5 2 Carbamidomethyl (C) _YVVFIC(Carbamidomethyl (C))C(Carbamidomethyl (C))NI_ ENST00000586588.5_1_19:10244028-10244166:-|nuORF 8.593279151180031 0.2858735984551981 1 YP 2 -1 20.969 0 0 1.7672 0 0 0 923.4350683333533 923.4350683333533 15.484550065040281 0 0 0 0 0 0 0 0 YP 1.7672 - 73 + NaN NaN 131770.6 NaN 12380 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15629 67.435 NaN 55744 35 0 3365.7 0.261 -1 MEFLFNKTGW 10 43 644.8056091243594 NaN 0 644.80517578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))EFLFNKTGW_ ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF 6.630372943996041 0.3345096087358732 1 {I|L} 1 -1 6.9897 0 0 0.54285 0 0 423.1461170750875 748.3409517877561 1171.4870688628437 0 0 0 0 0 0 0 0 0 {I|L} 0.54285 + + 4 + NaN NaN 90734.5 NaN 12381 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15630 67.438 NaN 86907 35 0 6774.7 0.264 + -1 YICCVGLL 8 47 470.7348327636719 NaN 0 470.7348327636719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YIC(Carbamidomethyl (C))CVGLL_ REV__ENSG00000184261|ENST00000327876|KCNK12 6.354104778181461 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91588.8 NaN 12382 3246 15623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15632 67.443 NaN 1610900 35 0 162100 0.327 + 13342 KYMDVQFDF 9 99 596.77074268441 1191.52693243562 2 596.77099609375 MULTI HCD FTMS 0 0 0 15631 846526.375 0.3592848417185249 6 -0.149017333984375 1 Unmodified _KYMDVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 139.78183599554657 1.962818552322152E-05 1 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 97.691 0 0 8.1988 8.1988 90.239 0 0 0 7.486964716146787 14.379617791072832 7.486964716146787 7.486964716146787 0 2.7302046884880937 0 0.9802046884880937 1.3754223615525998 + + [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]Q{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.1988;7.5705;7.426;7.3085;7.2794;6.8864;6.7977;6.5357;6.5177;6.5066 +;-;-;-;-;-;-;-;-;- + 5505 NaN NaN 328188.1 NaN 12383 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15633 67.448 NaN 777670 35 0 117590 0.261 + 27121 SYMGHFDLL 9 82 541.7524296466896 1081.4903063601791 2 541.7523803710938 MULTI HCD FTMS 0 0 0 15631 390911.625 0.07883177267601407 13 -0.34125518798828125 2 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 1 {I|L}D{M(Oxidation (M))|F}{[HG]|PP}C{I|L}{M(Oxidation (M))|F} 8 5 50.909 0 0 4.7073 0 0 131.09456257038556 0 131.09456257038556 0 37.62131061736055 0 0 0 2.048455006504028 0 0.7059771852360797 0 {I|L}D{M(Oxidation (M))|F}{[HG]|PP}C{I|L}{M(Oxidation (M))|F} 4.7073 - 472 + NaN NaN 202445 NaN 12384 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15634 67.451 NaN 737040 35 0 196230 0.261 + 19147 NGKYTITSL 9 62 498.77181118435016 995.5290694355003 2 498.7718200683594 MULTI HCD FTMS 0 0 0 15631 410725.90625 0.66963971738568 2 -0.0563201904296875 3 Unmodified _NGKYTITSL_ TTN|p.R2317L|1|0.3|ENSG00000155657|chr2:178774314-178774314|C/A|missense_variant 47.748688679222035 0.03472022231463587 1 AN{I|L}S{I|L} 5 6 61.37 0 0 6.1646 0 0 479.2421131818375 0 479.2421131818375 0 31.901056208558032 0 0 0 1.5 0 0.4247425010840047 0.805462187404089 AN{I|L}S{I|L} 6.1646 - 243 NaN NaN 191493.4 NaN 12385 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15635 67.455 NaN 951040 35 0 42096 0.261 -1 MDMLIYHYL 9 106 620.792761137397 1239.5709693415938 2 621.274169921875 MULTI HCD FTMS 0 0 0 15631 45250.640625 0.7599111604008448 -3 0.08539581298828125 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MDMLIYHYL_ ENST00000344442.9_2_4:113566021-113567542:+|nuORF 12.531546534597751 0.2520865569484384 1 M{[SA]|[TG]}AWVYVA{[QD]|[EN]|[WG]|[KD]|[RS]} 11 -1 + 43.529 0 0 3.5116 3.5116 80.029 0 0 0 -1.4978365640801528 4.596242040587306 -1.4978365640801528 1.3520701850593397 0 2.110924374808178 0 0 0.2302046884880938 M{[SA]|[TG]}AWVYVA{[QD]|[EN]|[WG]|[KD]|[RS]};M[QT]WVYVA{[QD]|[EN]|[WG]|[KD]|[RS]};M{[SA]|[TG]}AWVYV[WQ];M[QT]WVYV[WQ];M{[SA]|[TG]}TS{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[C(Carbamidomethyl (C))E]|[WC]}A{[DA]|[EG]}VYVA{[QD]|[EN]|[WG]|[KD]|[RS]};M{[SA]|[TG]}AWVWK{[{M(Oxidation (M))|F}D]|MM};M[QT]WVWK{[{M(Oxidation (M))|F}D]|MM};{[C(Carbamidomethyl (C))E]|[WC]}AW[KP]R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AVY[PA]NN[KC] 3.5116;3.4026;3.0383;2.9327;2.6242;2.4847;2.4044;2.2988;2.2516;2.1636 -;-;-;-;-;-;-;-;-;- 3788 + NaN NaN 227778.4 NaN 12386 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15636 67.458 NaN 873230 35 0 98839 0.262 + 20006 NYIGISLRI 9 69 524.8111696594632 1047.6077863857263 2 524.8111572265625 MULTI HCD FTMS 0 0 0 15631 384799.65625 0.8602660290676785 3 -0.08953094482421875 5 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 114.18643581695662 0.002258955990713129 1 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 105.26 0 0 10.048 10.048 92.837 0 0 0 24.081531501239297 16.478174818886373 16.478174818886373 8.865006360318688 0 2.7302046884880937 1.6989700043360187 0.3252574989159953 1.9916440611282624 + + [YN]{I|L}G{I|L}S{I|L}R{I|L};[YN]{I|L}G{I|L}SR{I|L}{I|L};[YN]{I|L}G{I|L}RS{I|L}{I|L};{[NV]|[RG]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{I|L}R{I|L};{[NV]|[RG]}[{M(Oxidation (M))|F}V]TS{I|L}R{I|L} 10.048;9.2017;9.0605;2.5642;1.8209 +;-;-;-;- + 959 NaN NaN 212000 NaN 12387 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15637 67.461 NaN 659610 35 0 94030 0.261 + -1 LYDMEWIK 8 81 557.2704385255871 NaN 0 557.2825317382812 PEAK HCD FTMS 0 0 0 15631 13013.4716796875 1 0 0 6 Oxidation (M) _LYDM(Oxidation (M))EWIK_ REV__tr|U7SV01|U7SV01_FUSNUWGRdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01456PE=4SV=1 20.871210003555333 0.3841330378571171 1 YDVNV{I|L}N 7 -1 29.774 0 0 2.6762 0 0 131.0663923080952 161.0245760553344 292.0909683634296 0 0 0 0 0 0.5484550065040282 0 0 0 YDVNV{I|L}N 2.6762 - 419 + NaN NaN 179899.2 NaN 12388 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15638 67.465 NaN 466760 35 0 71776 0.261 -1 FPFYYEIKM 9 59 627.2987212994602 1252.5828896657204 2 626.794677734375 MULTI HCD FTMS 0 0 0 15631 181421.859375 0.45681965988945206 -7 0.16675567626953125 7 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 5.296884461304476 0.3108627248283497 1 W[{I|L}A]Y{I|L}{M(Oxidation (M))|F}{I|L} 7 -1 25.706 0 0 2.0522 0 0 328.1420814965668 0 328.1420814965668 0 -4.929155219028942 -4.929155219028942 0 0 0 0 0 0 W[{I|L}A]Y{I|L}{M(Oxidation (M))|F}{I|L} 2.0522 - 146 NaN NaN 148599 NaN 12389 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15639 67.468 NaN 219380 35 0 18934 0.261 -1 0 69 578.3382688691462 577.3309924025461 1 578.33837890625 MULTI HCD FTMS 0 0 0 15631 42285.67578125 0.5525625212344744 2 -0.0563201904296875 8 NaN NaN 1 {I|L}T 2 -1 12.307 0 0 2.1317 0 0 155.11442243359926 205.06189905338127 360.17632148698056 0 0 0 0 0 0 0 0.7614393726401688 0 {I|L}T 2.1317 - 23 + NaN NaN 114760.9 NaN 12390 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15640 67.471 NaN 232820 35 0 17669 0.261 -1 FDELMDKF 8 70 530.7356657909717 NaN 0 530.7353515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _FDELM(Oxidation (M))DKF_ ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO 9.347437153973935 0.38822285293237185 1 E 1 -1 11.237 0 0 1.0606 0 0 668.3187142611424 259.0726411868347 927.391355447977 0 0 0 0 0 0 0 0.4247425010840047 0 E 1.0606 + + 31 + NaN NaN 119912.2 NaN 12391 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15641 67.475 NaN 99559 35 0 10058 0.261 + 17688 MALFFWQHGE 10 45 633.2912950380899 NaN 0 633.291748046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _MALFFWQHGE_ ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3 1.6526216038709556 0.33876987398426067 1 Y 1 10 6.9897 0 0 0.55273 0 0 164.0864220080171 934.3892305963499 1098.475652604367 0 0 0 0 0 0 0 0 0 Y 0.55273 - 16 + NaN NaN 89217 NaN 12392 3247 15631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15643 67.48 NaN 1033100 35 0 172510 0.327 + 30228 VINHPEIIV 9 71 517.3055708058494 1032.5965886784986 2 517.3058471679688 MULTI HCD FTMS 0 0 0 15642 547890.375 0.9624627023231195 -2 0.062652587890625 1 Unmodified _VINHPEIIV_ tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 30.636539890814138 0.10832830463492794 1 {I|L}N{I|L}V{I|L} 5 6 49.068 0 0 4.7519 0 0 462.22361952949376 0 462.22361952949376 0 20.10594649534969 0 0 0 0.7742275032520141 0 0 0.6861818737241735 {I|L}N{I|L}V{I|L} 4.7519 - 565 NaN NaN 239407.7 NaN 12393 3248 15642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15644 67.484 NaN 959330 35 0 89369 0.261 + 13713 KYPLLLQSI 9 83 537.8315639754669 1073.6485750177337 2 537.8316650390625 MULTI HCD FTMS 0 0 0 15642 171066.3125 0.43050506304037545 14 -0.3409576416015625 2 Unmodified _KYPLLLQSI_ ENSG00000076928|ENST00000354532|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 67.83816525789305 0.009787749748478139 1 [YK][{I|L}P]{I|L}{I|L}QS{I|L} 9 0 + 51.823 0 0 4.8268 4.8268 82.835 0 0 0 3.7086764302909145 3.7086764302909145 3.7086764302909145 3.7086764302909145 0 2.329689690656103 0 1.3441876774005248 0.2742275032520141 + + [YK][{I|L}P]{I|L}{I|L}QS{I|L};[{M(Oxidation (M))|F}V][VG]V{I|L}{I|L}QS{I|L};[YK][{I|L}P]{I|L}{I|L}[AG]S{I|L};[{M(Oxidation (M))|F}V][VG]V{I|L}{I|L}[AG]S{I|L} 4.8268;4.4814;3.7137;3.6278 +;-;-;- + 416 + NaN NaN 231741.4 NaN 12394 3248 15642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15645 67.488 NaN 507710 35 0 54546 0.261 + 5299 FFIAGRYEF 9 81 575.2898294524651 1148.5651059717302 2 575.2891235351562 MULTI HCD FTMS 0 0 0 15642 147471.921875 0.7463263118648544 -2 0.062652587890625 3 Unmodified _FFIAGRYEF_ ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1 38.175570920033316 0.07371992880350783 1 A{I|L}E{M(Oxidation (M))|F} 4 6 51.186 0 0 4.4565 0 0 670.3071861940824 0 670.3071861940824 0 36.96054326937343 0 0 0 1.9247425010840047 0 0 0 A{I|L}E{M(Oxidation (M))|F} 4.4565 - 2970 NaN NaN 173314.3 NaN 12395 3248 15642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15646 67.491 NaN 588570 35 0 52322 0.261 + 5176 FFDAELSQM 9 69 552.2390895993532 1102.4636262655063 2 552.2395629882812 MULTI HCD FTMS 0 0 0 15642 126913.375 0.03691589175824675 88 -2.3863983154296875 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 72.96794272382148 0.008127836904478181 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D + + 66.988 5.0617 1.2371 6.0762 6.0762 63.414 0 0 0 0 55.929862658764264 0 0 0 2.274227503252014 0 0.3494850021680094 0.3494850021680094 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 6.0762 + + 592 + NaN NaN 171800.2 NaN 12396 3248 15642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15647 67.495 NaN 342470 35 0 23241 0.261 + 28237 TLIDLPGITR 10 93 549.8292507910023 1097.6439486488046 2 549.8296508789062 MULTI HCD FTMS 0 0 0 15642 66055.703125 0.7254805086848678 6 -0.15225982666015625 5 Unmodified _TLIDLPGITR_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 32.037481411007896 0.2145045983280644 1 [{I|L}T]{I|L}D 4 6 46.555 0 0 4.2413 0 0 0 652.3788546197874 652.3788546197874 23.612562435628988 0 0 0 0 1.1861818737241734 2 0 0 + [{I|L}T]{I|L}D 4.2413 + + 439 + NaN NaN 135204 NaN 12397 3248 15642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15649 67.5 NaN 3298200 35 0 397130 0.326 + 13227 KYMDIEFDF 9 110 612.2680883328802 1222.5216237325603 2 612.2684326171875 MULTI HCD FTMS 0 0 0 15648 2607452.75 1 0 0 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 85.16 0 0 6.9659 6.9659 85.945 0 0 0 2.301594589017384 45.20181229336984 2.301594589017384 2.4809756783349 0 2.6861818737241734 0 1.6906140654642812 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}D{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F};YK{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{I|L}[CG]{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}VEE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VEKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}YKD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KVEE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.9659;6.763;6.7143;6.5278;6.522;6.0098;5.9791;5.941;5.8919;5.541 +;-;-;-;-;-;-;-;-;- + 10716 NaN NaN 589772.2 NaN 12398 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15650 67.504 NaN 820840 35 0 186190 0.261 + 3786 EPEDHYFLL 9 71 581.7739321607121 1161.533311388224 2 581.774658203125 MULTI HCD FTMS 0 0 0 15648 609135.4375 0.522580271211618 8 -0.215606689453125 2 Unmodified _EPEDHYFLL_ ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF 30.224811164608877 0.11021837014094292 1 {I|L}{I|L} 2 7 21.454 0 0 1.847 0 0 917.3554417533921 0 917.3554417533921 0 7.636736735613994 0 0 0 0.5 0 0 0 + {I|L}{I|L} 1.847 + + 89 NaN NaN 211742.4 NaN 12399 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15651 67.508 NaN 541240 35 0 66422 0.261 + 11930 KFISTSLLL 9 83 511.31816216765253 1020.6217714021051 2 511.3183898925781 MULTI HCD FTMS 0 0 0 15648 302594.28125 0.6468705994521885 4 -0.0926971435546875 3 Unmodified _KFISTSLLL_ ENSG00000156234|ENST00000682537|CXCL13;ENST00000506590.1_1_4:78527019-78531849:+|nuORF 70.33199760932243 0.0089807860198535 1 STS{I|L}{I|L}{I|L} 6 3 58.127 0 0 5.6953 0 0 388.2473888301179 0 388.2473888301179 0 37.90627922162946 0 0 0 1.9802046884880937 0 1.0189301784845295 0 + STS{I|L}{I|L}{I|L} 5.6953 + + 635 NaN NaN 156084.1 NaN 12400 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15652 67.511 NaN 410190 35 0 38980 0.261 + 12752 KYDEIFYNL 9 69 602.7977747539607 1203.5809965747212 2 602.7979736328125 MULTI HCD FTMS 0 0 0 15648 228967.953125 0.035178434648601986 31 -0.8124847412109375 4 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 49.52724829834842 0.03223213920720493 1 [YV]EEK{M(Oxidation (M))|F}YN{I|L} 9 3 + 66.577 0 0 5.5316 5.5316 82.292 0 0 0 5.223703006718594 16.46128035678238 5.223703006718594 0.17220322351953143 0 1.5 1.5228787452803376 0.3494850021680094 0 [YV]EEK{M(Oxidation (M))|F}YN{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EEK{M(Oxidation (M))|F}YGG{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EK{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[SG]{I|L}{M(Oxidation (M))|F}YN{I|L} 5.5316;5.5173;5.5173;5.0976;5.017;4.7665;4.7558;4.7558;4.3468;4.3325 -;-;-;-;+;-;-;-;-;- + 1363 NaN NaN 143862.5 NaN 12401 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15653 67.514 NaN 499720 35 0 56038 0.261 + 5300 FFIAGRYEF 9 71 575.2898294524651 1148.5651059717302 2 575.7916870117188 MULTI HCD FTMS 0 0 0 15648 147650.234375 0.9306622468421688 1 -0.03321075439453125 5 Unmodified _FFIAGRYEF_ ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1 47.748688679222035 0.03472022231463587 1 SA{I|L}E{M(Oxidation (M))|F} 5 6 60.093 0 0 5.232 0 0 583.2718983380875 0 583.2718983380875 0 39.29149873159935 0 0 0 1.9247425010840047 0 0.6382104921644451 0 SA{I|L}E{M(Oxidation (M))|F} 5.232 - 289 NaN NaN 162769.3 NaN 12402 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15654 67.518 NaN 272910 35 0 110380 0.261 -1 AYPPAPFMHIL 11 43 636.8260658958287 1271.6375788584573 2 636.8262939453125 MULTI HCD FTMS 0 0 0 15648 73831.125 0.8011263123950313 1 -0.03321075439453125 6 Oxidation (M) _AYPPAPFM(Oxidation (M))HIL_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 6.723162845929126 0.38943515815631113 1 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.649 0 0 943.5533314435562 0 943.5533314435562 0 10.511525224473813 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.649 - 11 NaN NaN 120166.7 NaN 12403 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15655 67.521 NaN 184040 35 0 8944.6 0.261 + -1 KGDKETNGCHL 11 55 629.7976943441806 1257.5808357551612 2 629.79736328125 MULTI HCD FTMS 0 0 0 15648 34792.30859375 0.5254300089407975 2 -0.0432281494140625 7 Carbamidomethyl (C) _KGDKETNGC(Carbamidomethyl (C))HL_ REV__ENST00000484221.1_1_1:160721938-160722951:+|nuORF;REV__nc|ENSG00000026751|Q9NQ25-3|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-4|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7 4.897010918128616 0.3974440401582579 1 MHY 3 -1 23.188 0 0 1.8438 0 0 0 823.3883761041624 823.3883761041624 0.7918124604762511 0 0 0 0 0 0 0 0 MHY 1.8438 - 247 + NaN NaN 114408.5 NaN 12404 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15656 67.524 NaN 118850 35 0 17201 0.264 + 24477 RYLDVSILGKF 11 43 437.5866385607105 1309.7380862823316 3 437.5871276855469 MULTI HCD FTMS 0 0 0 15648 41397.95703125 0.3044259823209123 9 -0.23873138427734375 8 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 11.065280125700339 0.3606702632373656 1 {I|L}[KG]{M(Oxidation (M))|F} 4 7 26.682 0 0 2.0372 0 0 846.4589360872873 0 846.4589360872873 0 12.078343878162343 0 0 0 1.3494850021680094 0 0 0 + {I|L}[KG]{M(Oxidation (M))|F} 2.0372 + + 13 + NaN NaN 100378.4 NaN 12405 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15657 67.528 NaN 136500 35 0 17927 0.261 + 32609 WLGPGALP 8 55 405.72890380387713 809.4432546745543 2 405.7296447753906 MULTI HCD FTMS 0 0 0 15648 38818.8828125 0.5703356897516693 -1 0.01985931396484375 9 Unmodified _WLGPGALP_ REV__ENST00000380817.7_1_22:50883462-50883615:-|nuORF 11.114462752807354 0.5120171699125776 1 W{I|L}E{I|L}[H{I|L}] 6 -1 + 59.218 0 0 7.3159 7.3159 94.392 0 0 0 45.723506410013215 2.5874185669681538 2.5874185669681538 31.837294113476204 0 1.0356668758921828 2 0.4247425010840047 0 W{I|L}E{I|L}[H{I|L}];[W{I|L}]E{I|L}[H{I|L}] 7.3159;3.3827 -;- 35 + NaN NaN 97222.7 NaN 12406 3249 15648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15659 67.533 NaN 449370 35 0 58067 0.327 -1 IYNPSMGVSVL 11 75 598.3048634458851 1194.59517395857 2 598.8193969726562 MULTI HCD FTMS 0 0 0 15658 13427.7783203125 0.26510927016408725 4 -0.09918975830078125 1 Oxidation (M) _IYNPSM(Oxidation (M))GVSVL_ ENSG00000110400|ENST00000264025|NECTIN1;ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-2|NECTIN1;nc|ENSG00000110400|Q15223-3|NECTIN1 19.625955294349634 0.28608081981942357 1 RSV{I|L} 4 -1 28.22 0 0 2.3623 0 0 721.3117542951187 0 721.3117542951187 0 7.774334638038454 0 0 0 0.8494850021680094 0 0.3807196863200844 0 RSV{I|L} 2.3623 - 435 NaN NaN 152669.2 NaN 12407 3250 15658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15660 67.537 NaN 176630 35 0 16426 0.261 + 11164 IYIVGGCLHEL 11 50 608.8228831783716 1215.6312134235432 2 608.8235473632812 MULTI HCD FTMS 0 0 0 15658 67349.875 0.6661646416047204 1 -0.01001739501953125 2 Unmodified _IYIVGGCLHEL_ ENSG00000087448|ENST00000381271|KLHL42 27.088373467376528 0.22106052561220446 1 [Y{I|L}]{I|L}VG 5 6 58.015 0 0 4.7724 0 0 0 667.2916964166624 667.2916964166624 50.228787452803374 0 0 0 0 1.8807196863200843 1.6989700043360187 0 0 + [Y{I|L}]{I|L}VG 4.7724 + + 89 + NaN NaN 105703.6 NaN 12408 3250 15658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15662 67.542 NaN 1650600 35 0 278820 0.327 + 33360 YGHLELIQL 9 101 543.3031228870129 1084.5916928408258 2 543.3032836914062 MULTI HCD FTMS 0 0 0 15661 906603.375 0.5445210847977618 -3 0.06308746337890625 1 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 88.95385435242217 0.004553379958619559 1 {I|L}E{I|L}{I|L}Q{I|L} 6 3 67.233 0 0 6.199 0 0 357.143846580275 0 357.143846580275 0 50.834040958164124 0 0 0 2.079689690656103 0 0.5629529932484498 0.3807196863200844 + {I|L}E{I|L}{I|L}Q{I|L} 6.199 + + 994 NaN NaN 333767.9 NaN 12409 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15663 67.547 NaN 1281300 35 0 496020 0.261 + 10780 ISPGRYFLL 9 80 533.308312078647 1064.6020712240938 2 533.3084106445312 MULTI HCD FTMS 0 0 0 15661 493195.71875 0.38980050213332074 7 -0.19550323486328125 2 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 34.93206674587334 0.08860942999206235 1 {I|L}SP[HA]{I|L}{I|L}AP{M(Oxidation (M))|F} 10 7 + 75.126 0 0 7.0567 7.0567 95.288 0 0 0 53.21456278567766 13.037275116073346 13.037275116073346 75.12578788640525 0 0.5 1.6989700043360187 0.5 0 {I|L}SP[HA]{I|L}{I|L}AP{M(Oxidation (M))|F} 7.0567 - 762 + NaN NaN 273349.5 NaN 12410 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15664 67.551 NaN 1046200 35 0 108300 0.261 -1 SYINYVITM 9 107 560.2723178317838 1118.5300827303674 2 561.2886962890625 MULTI HCD FTMS 0 0 0 15661 30981.037109375 0.8912395824027518 4 -0.112579345703125 3 Oxidation (M) _SYINYVITM(Oxidation (M))_ ENSG00000144426|ENST00000683969|NBEAL1;ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1 23.789781309258295 0.1548179064208189 1 YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 8 -1 47.657 0 0 4.2606 0 0 145.00403400165493 0 145.00403400165493 0 -2.324229892291484 -2.324229892291484 0 0 0 0 0.3807196863200844 0 YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 4.2606 - 1480 + NaN NaN 238009 NaN 12411 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15665 67.554 NaN 1408200 35 0 177150 0.261 + 1149 AYLESFYKF 9 102 584.289645907993 1166.5647388827858 2 584.2900390625 MULTI HCD FTMS 0 0 0 15661 616194.6875 0.0334206961858966 -7 0.18494415283203125 4 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 127.5 0 0 10.929 10.929 95.804 0 0 0 70.6652005196118 14.973024840566467 14.973024840566467 12.253909886649083 0 3.2302046884880937 2 0.6139829889124311 0.8243923658886186 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYS{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYYAK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YEAYK{M(Oxidation (M))|F} 10.929;9.8789;9.3982;8.9342;8.8172;8.7833;8.3365;8.3026;8.1856;8.1124 +;+;-;-;-;-;-;-;-;- + 9961 + NaN NaN 301119.9 NaN 12412 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15666 67.557 NaN 542630 35 0 66321 0.262 + 13996 KYSPFVVSF 9 70 537.2870220359804 1072.5594911387607 2 537.2871704101562 MULTI HCD FTMS 0 0 0 15661 134888.71875 0.040993041084829186 23 -0.6003875732421875 5 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 51.41523569358685 0.02959097413485123 1 VVS{M(Oxidation (M))|F} 4 5 51.322 0 0 4.785 0 0 622.3136242948138 0 622.3136242948138 0 28.78603502440253 0 0 0 1.805462187404089 0 0.555462187404089 0 + VVS{M(Oxidation (M))|F} 4.785 + + 216 + NaN NaN 164957.4 NaN 12413 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15667 67.561 NaN 472260 35 0 28293 0.261 + 2901 DYSPYFKTI 9 89 567.2791460627044 1132.5437391922087 2 567.2791748046875 MULTI HCD FTMS 0 0 0 15661 228063.890625 0.009249780059873114 167 -4.577781677246094 6 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.24910588100465 0.021429789259086996 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 57.63 0 0 5.0885 5.0885 87.904 0 0 0 15.390078662816784 11.955254724066876 11.955254724066876 11.955254724066876 0 1.7302046884880937 1.6989700043360187 0.3494850021680094 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};[YT]{[NV]|[RG]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VYY[QP]T{I|L};[RH]{M(Oxidation (M))|F}{[QS]|[NT]}QV[MT];{[YD]|[{M(Oxidation (M))|F}M]}[KA]{[QS]|[NT]}E[RH];[Y{I|L}]Q[C(Carbamidomethyl (C))K]E[RH];{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[C(Carbamidomethyl (C))K]E[RH] 5.0885;4.0329;3.7296;2.674;2.1065;1.3194;1.1428;0.89193;0.67859;0.55576 +;-;-;-;-;-;-;-;-;- + 1488 NaN NaN 159252.9 NaN 12414 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15668 67.564 NaN 298180 35 0 22243 0.261 -1 0 62 604.7680411660131 1207.521529398826 2 604.7683715820312 MULTI HCD FTMS 0 0 0 15661 137232.078125 0.04306138095409183 91 -2.49029541015625 7 NaN NaN 1 DQPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 53.461 0 0 4.4274 0 0 312.14729506660314 0 312.14729506660314 0 30.2738823421749 0 0 0 0.5 0 0.3252574989159953 0.4247425010840047 DQPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.4274 - 543 NaN NaN 130598.2 NaN 12415 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15669 67.567 NaN 1636100 35 0 159660 0.261 + 1150 AYLESFYKF 9 115 584.289645907993 1166.5647388827858 2 585.294189453125 MULTI HCD FTMS 0 0 0 15661 170850.328125 0.0346243193831472 -6 0.16190338134765625 8 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 85.64151623876279 0.004640175941193596 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESKE{I|L}S 9 4 79.446 0 0 6.8102 0 0 0 143.04689080647577 143.04689080647577 32.87623210270171 0 0 0 0 1.4291746928241125 2 1.0451140161145327 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESKE{I|L}S 6.8102 - 9710 NaN NaN 338134.9 NaN 12416 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15670 67.57 NaN 275000 35 0 44020 0.261 + 30404 VLPARYFYI 9 68 571.323640085992 1140.632727238784 2 571.32421875 MULTI HCD FTMS 0 0 0 15661 40053.765625 0.1272406358217214 10 -0.26482391357421875 9 Unmodified _VLPARYFYI_ ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103443606-103451020:-|nuORF 21.74664581756881 0.17247014374749275 1 Q[PA]{M(Oxidation (M))|F}[YR]{I|L}Y 8 5 23.549 0 0 2.0645 0 0 84.10446371435303 0 84.10446371435303 0 9.569488448666803 0 0 0 0.8807196863200843 0 0 0.3807196863200844 Q[PA]{M(Oxidation (M))|F}[YR]{I|L}Y 2.0645 - 177 + NaN NaN 124293.2 NaN 12417 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15671 67.574 NaN 168890 35 0 35812 0.263 + 26105 SPISAQDLL 9 46 472.25831507852945 942.5020772238589 2 472.25823974609375 MULTI HCD FTMS 0 0 0 15661 63866.953125 0.4102029154570445 -3 0.06308746337890625 10 Unmodified _SPISAQDLL_ ENSG00000170265|ENST00000610704|ZNF282;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant 23.789781309258295 0.1548179064208189 1 QD{I|L}{I|L} 4 5 45.349 0 0 4.8116 0 0 455.23909194160314 0 455.23909194160314 0 34.38039076304328 0 0 0 1.1549471895720984 0 0.4247425010840047 0 + QD{I|L}{I|L} 4.8116 + + 53 NaN NaN 104735.6 NaN 12418 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15672 67.577 NaN 145690 35 0 10333 0.261 + 9607 HSNASQIMSYF 11 53 642.7889287689069 1283.5633046046137 2 643.290283203125 MULTI HCD FTMS 0 0 0 15661 31993.8671875 0.554431407303191 -2 0.0432281494140625 11 Unmodified _HSNASQIMSYF_ REV__ENSG00000165675|ENST00000394363|ENOX2;REV__nc|ENSG00000165675|Q16206|ENOX2 6.630372943996041 0.3898421031449734 1 WY{M(Oxidation (M))|F} 3 -1 25.049 0 0 1.9516 0 0 769.3421498029312 0 769.3421498029312 0 3.6227313277985473 0 0 0 0.4247425010840047 0 0 0 WY{M(Oxidation (M))|F} 1.9516 - 12 NaN NaN 104908.9 NaN 12419 3251 15661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15674 67.582 NaN 316180 35 0 32761 0.326 + 33410 YGRIEILSGF 10 74 577.8138279645603 1153.6131029959206 2 577.8136596679688 MULTI HCD FTMS 0 0 0 15673 81401.328125 0.7197753943927212 1 -0.01010894775390625 1 Unmodified _YGRIEILSGF_ ENSG00000145740|ENST00000396591|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;nc|ENSG00000145740|Q8TAD4-2|SLC30A5 34.93206674587334 0.18938571726943593 1 [HA]T{I|L}{I|L}EVVSW 10 8 + 61.515 0 0 5.3324 5.3324 84.571 0 0 0 36.56681865368853 3.5340874929963917 3.5340874929963917 5.752574989159953 0 1.9604093769761877 0 0.3494850021680094 0 [HA]T{I|L}{I|L}EVVSW;[HA]T{I|L}{I|L}[DV]{I|L}SW;[HA]T{I|L}{I|L}E[{I|L}A]TW;[Y{I|L}]{[NV]|[RG]}E{I|L}{I|L}[YQ];[HA]T{I|L}{I|L}[DV]VTW;[Y{I|L}]{[NV]|[RG]}E{I|L}{I|L}[SG]{M(Oxidation (M))|F};[HA]R[QT]R{I|L}SW;[HA]R[QT]RVTW;[Y{I|L}]{[NV]|[RG]}E{I|L}[VP][HA];[Y{I|L}]Q[DV]{I|L}[VP][HA] 5.3324;4.8337;4.8105;4.3536;4.3119;4.0413;3.2393;2.7174;2.6654;2.1667 -;-;-;-;-;-;-;-;-;- 1013 + NaN NaN 130825.1 NaN 12420 3252 15673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15675 67.586 NaN 168910 35 0 28544 0.263 + 22040 QGFLIYKPCIW 11 45 456.57865495836336 1366.71413547529 3 456.91424560546875 MULTI HCD FTMS 0 0 0 15673 19764.48828125 0.4759046258614863 1 -0.01010894775390625 2 Unmodified _QGFLIYKPCIW_ ENST00000581335.1_1_17:73224204-73224372:+|nuORF 9.764250979337305 0.37200617284565546 1 W 1 10 21.99 0 0 1.6089 0 0 1162.6241524204056 0 1162.6241524204056 0 15.026975159433531 0 0 0 0.5 0 0 0 + W 1.6089 + + 17 + NaN NaN 108728.3 NaN 12421 3252 15673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15677 67.592 NaN 658730 35 0 64435 0.327 + 13273 KYMDINFDF 9 70 596.77074268441 1191.52693243562 2 596.77099609375 MULTI HCD FTMS 0 0 0 15676 332353.46875 0.14105829061078748 12 -0.305023193359375 1 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 80.6760300276096 0.005633624786464751 1 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 84.901 0 0 7.1254 7.1254 87.696 0 0 0 5.593859345357188 12.205452212310348 5.593859345357188 5.593859345357188 0 2.6989700043360187 0 0.7059771852360797 0.6237125054200234 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]Q{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]Q{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][AG]{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.1254;6.6559;6.4712;6.4417;6.3526;5.8831;5.6984;5.6689;5.653;5.4387 -;-;-;-;-;-;-;-;-;- 924 NaN NaN 188415.5 NaN 12422 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15678 67.596 NaN 855130 35 0 49341 0.261 + -1 QSIRSCQSMK 10 100 620.792761137397 1239.5709693415938 2 621.274169921875 MULTI HCD FTMS 0 0 0 15676 16699.34375 0.28043840952793353 3 -0.09307861328125 2 Carbamidomethyl (C),Oxidation (M) _QSIRSC(Carbamidomethyl (C))QSM(Oxidation (M))K_ REV__ENST00000588134.1_1_18:53447116-53447923:-|nuORF 12.240655878213236 0.39661705172222156 1 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}NNCK 7 -1 43.748 0 0 3.5293 0 0 312.1140309064469 0 312.1140309064469 0 1.8579595589909559 0 0 0 0 0 0 0.3807196863200844 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}NNCK 3.5293 - 3481 NaN NaN 216571.3 NaN 12423 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15679 67.6 NaN 771740 35 0 107450 0.261 -1 FPFYYEIKM 9 84 627.2987212994602 1252.5828896657204 2 626.7947998046875 MULTI HCD FTMS 0 0 0 15676 306516.375 0.771807248919327 -1 0.01010894775390625 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 19.361941925380144 0.1930734562688509 1 [WY]{M(Oxidation (M))|F}[K{I|L}]WY 7 -1 28.204 0 0 2.2517 0 0 0 163.06452479425857 163.06452479425857 4.259687322722812 0 0 0 0 0 1.5228787452803376 0 0 [WY]{M(Oxidation (M))|F}[K{I|L}]WY 2.2517 - 1168 NaN NaN 206890.2 NaN 12424 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15680 67.604 NaN 661270 35 0 57725 0.261 + 13122 KYLINLETL 9 84 553.8263774480523 1105.6382019629045 2 553.8265991210938 MULTI HCD FTMS 0 0 0 15676 310532.09375 0.4349058029064951 -2 0.049468994140625 4 Unmodified _KYLINLETL_ ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant 145.12958885780327 1.3974915176135797E-05 1 [YK]{I|L}{I|L}N{I|L}ET{I|L} 9 0 + 94.263 0 0 8.5256 8.5256 92.308 0 0 0 5.6424927368725974 15.573193899842437 5.6424927368725974 9.208187539523749 0 2.579689690656103 0 0.3054621874040891 1.3807196863200843 + + [YK]{I|L}{I|L}N{I|L}ET{I|L};[YK]{I|L}{I|L}GG{I|L}ET{I|L};[YK]{I|L}{I|L}A[VG]ET{I|L};[{I|L}T]E{I|L}N{I|L}{I|L}YK;[YK]{I|L}[PS]{I|L}[TA]T{I|L};[YK]{I|L}{I|L}[PS][TA]T{I|L};[{I|L}T]EN{I|L}{I|L}{I|L}YK;[{I|L}T]E{I|L}GG{I|L}{I|L}YK;[{I|L}T]E{I|L}N{I|L}[YK]{I|L};[{I|L}T]EGG{I|L}{I|L}{I|L}YK 8.5256;7.6928;6.3627;5.6161;5.3145;4.9304;4.9123;4.7832;4.7191;4.0794 +;-;-;-;-;-;-;-;-;- + 1054 NaN NaN 186866.5 NaN 12425 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15681 67.607 NaN 270820 35 0 37492 0.261 + 33078 YDLSQVIYL 9 62 557.2940587936431 NaN 0 557.2822265625 PEAK HCD FTMS 0 0 0 15676 9064.5341796875 0.593161235464181 -1 0.01010894775390625 5 Unmodified _YDLSQVIYL_ ENST00000497048.5_1_9:110247318-110247534:-|nuORF 10.823927491677226 0.2427956001690155 1 YDV{[NV]|[RG]}{I|L} 6 5 17.638 0 0 1.5853 0 0 131.11578575411005 275.06723962955317 406.1830253836632 0 0 0 0 0 0.3252574989159953 0 0 0.3494850021680094 YDV{[NV]|[RG]}{I|L} 1.5853 - 148 + NaN NaN 120360.1 NaN 12426 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15682 67.61 NaN 319440 35 0 54976 0.261 + 33376 YGKNITTTV 9 67 498.77181118435016 995.5290694355003 2 498.7728271484375 MULTI HCD FTMS 0 0 0 15676 80740.515625 0.1316378033183756 8 -0.21535491943359375 6 Unmodified _YGKNITTTV_ tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1 49.93300154707207 0.03166451819912738 1 TT{I|L}SM{I|L}{I|L} 7 8 57.303 0 0 5.756 0 0 218.1265583722672 0 218.1265583722672 0 29.255668142670274 0 0 0 1.4247425010840047 0 1.3882104921644451 0 TT{I|L}SM{I|L}{I|L} 5.756 - 545 NaN NaN 136403.7 NaN 12427 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15683 67.614 NaN 491700 35 0 21999 0.261 + 5547 FLFSYGTILS 10 99 574.3037223230277 NaN 0 574.2935180664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _FLFSYGTILS_ ENSG00000168038|ENST00000301831|ULK4 25.399314129420986 0.2368981700431367 1 VP{M(Oxidation (M))|F}{I|L}[VS]A{M(Oxidation (M))|F}G 9 9 23.616 0 0 2.0597 0 0 64.03397698692795 162.0564364068969 226.09041339382486 0 0 0 0 0 0 0 1.3851518780601921 0 VP{M(Oxidation (M))|F}{I|L}[VS]A{M(Oxidation (M))|F}G 2.0597 - 869 + NaN NaN 152963.1 NaN 12428 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15684 67.617 NaN 630550 35 0 69921 0.261 + 20007 NYIGISLRI 9 74 524.8111696594632 1047.6077863857263 2 524.8114624023438 MULTI HCD FTMS 0 0 0 15676 123751.8125 0.27666209831574634 9 -0.22840118408203125 8 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 103.82355648334675 0.003950725192926219 1 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 99.675 0 0 9.5145 9.5145 91.218 0 0 0 21.74607471246341 16.478174818886373 16.478174818886373 5.848396689760094 0 2.6549471895720984 1.6989700043360187 0 1.930265894174725 + + [YN]{I|L}G{I|L}S{I|L}R{I|L};[YN]{I|L}G{I|L}SR{I|L}{I|L};[YN]{I|L}G{I|L}RS{I|L}{I|L};[YN]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}VS{I|L}{I|L};[YN]{I|L}G{I|L}KK{[NV]|[RG]};[YN]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[KA]{[NV]|[RG]} 9.5145;8.9562;8.8967;5.9284;5.7736;2.8053 +;-;-;-;-;- + 814 NaN NaN 179342.6 NaN 12429 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15685 67.62 NaN 169550 35 0 5720 0.261 + 9816 HYNWLIYHL 9 67 629.822209971294 1257.629867009388 2 629.8229370117188 MULTI HCD FTMS 0 0 0 15676 10542.5302734375 0.2546952843835004 -1 0.01010894775390625 9 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 23.789781309258295 0.1548179064208189 1 {I|L}YH{I|L} 4 5 40.165 0 0 3.1937 0 0 713.3270741193375 0 713.3270741193375 0 21.18562527100117 0 0 0 1.1237125054200234 0 0 0 + {I|L}YH{I|L} 3.1937 + + 196 NaN NaN 108035.9 NaN 12430 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15686 67.624 NaN 79838 35 0 12510 0.263 + 11392 IYPEEAHL 8 26 486.2464242276754 NaN 0 486.4869079589844 PEAK HCD FTMS 0 0 0 15676 8374.5654296875 0.8526653787861237 -1 0.01010894775390625 10 Unmodified _IYPEEAHL_ REV__ENSG00000258484|ENST00000310673|SPESP1 5.230669730166228 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.72023 0 0 131.0927497231258 779.3417073207398 910.4344570438657 0 0 0 0 0 0 0 0 0 G 0.72023 - 1 + NaN NaN 92592.5 NaN 12431 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15687 67.627 NaN 249700 35 0 31030 0.261 + 2116 DFISTLSYI 9 70 529.7735475982688 1057.5325422633375 2 529.7734985351562 MULTI HCD FTMS 0 0 0 15676 25518.296875 0.46104526055998574 2 -0.0631103515625 11 Unmodified _DFISTLSYI_ ENSG00000176681|ENST00000320254|LRRC37A;ENSG00000238083|ENST00000576629|LRRC37A2;ENST00000572638.1_1_17:44625595-44632942:+|nuORF 25.399314129420986 0.14091189997036632 1 C(Carbamidomethyl (C)){I|L}SY{I|L} 5 5 39.285 0 0 3.7147 0 0 403.2350331037125 0 403.2350331037125 0 23.272372282795498 0 0 0 0.7614393726401688 0 0.4247425010840047 0 C(Carbamidomethyl (C)){I|L}SY{I|L} 3.7147 - 126 NaN NaN 114905.3 NaN 12432 3253 15676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15689 67.632 NaN 537030 35 0 62796 0.327 + 11393 IYPHGLVLL 9 75 512.813002013963 1023.611451094726 2 512.81298828125 MULTI HCD FTMS 0 0 0 15688 275649.40625 0.8969680385300097 -1 0.039703369140625 1 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 36.466142684027034 0.08156716203802528 1 V{I|L}{I|L} 3 6 31.242 0 0 3.0522 0 0 680.3650133000625 0 680.3650133000625 0 17.085521743960328 0 0 0 0.805462187404089 0 0 0 + V{I|L}{I|L} 3.0522 + + 222 NaN NaN 161280.3 NaN 12433 3254 15688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15690 67.636 NaN 349890 35 0 68620 0.261 -1 TAMDVVYAL 9 59 499.7466991268183 997.4788453204367 2 499.7469482421875 MULTI HCD FTMS 0 0 0 15688 108751.9375 0.11961217748508604 31 -0.8297576904296875 2 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 1 VYA{I|L} 4 -1 40.662 0 0 4.0765 0 0 533.2161296347575 0 533.2161296347575 0 7.50885542949554 0 0 0 1.3494850021680094 0 0 0 VYA{I|L} 4.0765 + + 331 NaN NaN 145819.5 NaN 12434 3254 15688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15691 67.64 NaN 486800 35 0 73458 0.261 -1 PYSINMNVF 9 79 550.7572202844511 NaN 0 550.7574462890625 PEAK HCD FTMS 0 0 0 15688 128145.5546875 1 0 0 3 Oxidation (M) _PYSINM(Oxidation (M))NVF_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 32.78568957990786 0.10157793141031472 1 VN 2 -1 23.201 0 0 2.1101 0 0 165.07711328229385 718.2893160455686 883.3664293278625 0 0 0 0 0 1.25 0 0 0.2742275032520141 VN 2.1101 - 107 + NaN NaN 151165.8 NaN 12435 3254 15688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15692 67.644 NaN 279610 35 0 28645 0.261 + 14772 LIDQELLSM 9 67 539.2784502593228 1076.5423475854454 2 539.2788696289062 MULTI HCD FTMS 0 0 0 15688 109266.578125 0.6695418192861787 -6 0.15225982666015625 4 Oxidation (M) _LIDQELLSM(Oxidation (M))_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 66.45667989310934 0.010234776021261575 1 E{I|L}{I|L}S{M(Oxidation (M))|F} 5 4 62.251 0 0 5.7825 0 0 469.2557397747017 0 469.2557397747017 0 51.79297219607513 0 0 0 1.9247425010840047 0 0.6549471895720985 0 + E{I|L}{I|L}S{M(Oxidation (M))|F} 5.7825 + + 145 + NaN NaN 120752.2 NaN 12436 3254 15688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15693 67.647 NaN 188550 35 0 42584 0.262 + 16438 LSNEKPVSL 9 46 493.7794246431072 985.5442963530144 2 493.77935791015625 MULTI HCD FTMS 0 0 0 15688 63218.94921875 0.3673560715069142 -4 0.09918975830078125 5 Unmodified _LSNEKPVSL_ ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1 12.240655878213236 0.2545997876781172 1 VS{I|L} 3 6 35.445 0 0 3.5965 0 0 668.3507909652466 0 668.3507909652466 0 21.46591250700361 0 0 0 0.9247425010840047 0 0 0 + VS{I|L} 3.5965 + + 22 NaN NaN 112529.6 NaN 12437 3254 15688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15694 67.65 NaN 65517 35 0 5632.2 0.261 + 16407 LSKILRAKKHK 11 37 441.29740960615027 NaN 0 441.29766845703125 PEAK HCD FTMS 0 0 0 15688 11772.67578125 0.2651548110720118 -2 0.04981231689453125 6 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83996.2 NaN 12438 3254 15688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15696 67.655 NaN 2375600 35 0 277930 0.326 + 13228 KYMDIEFDF 9 102 612.2680883328802 1222.5216237325603 2 612.2682495117188 MULTI HCD FTMS 0 0 0 15695 1760471.25 0.6751689939539652 6 -0.15224456787109375 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 1 YYTE{I|L}D{[SA]|[TG]}DT 10 7 84.33 0 0 6.8981 0 0 0 60.98412208698952 60.98412208698952 46.86355464514541 0 0 0 0 2.274227503252014 1.5228787452803376 2.0495462078546405 0 YYTE{I|L}D{[SA]|[TG]}DT 6.8981 - 5276 NaN NaN 446977.3 NaN 12439 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15697 67.66 NaN 472670 35 0 75307 0.261 -1 QLEGNSCEIL 10 64 581.7739321607121 1161.533311388224 2 581.7752685546875 MULTI HCD FTMS 0 0 0 15695 291171.34375 0.2497973199694629 14 -0.35248565673828125 2 Carbamidomethyl (C) _QLEGNSC(Carbamidomethyl (C))EIL_ ENSG00000075420|ENST00000415807|FNDC3B 13.042465956692817 0.38911719078024076 1 {I|L}{I|L} 2 -1 18.812 0 0 1.6196 0 0 917.3597279279312 0 917.3597279279312 0 7.843181179205061 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.6196 + + 77 NaN NaN 163316.9 NaN 12440 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15698 67.664 NaN 310770 35 0 30011 0.261 + 12753 KYDEIFYNL 9 52 602.7977747539607 1203.5809965747212 2 602.798095703125 MULTI HCD FTMS 0 0 0 15695 208811.28125 0.03208158133524378 37 -0.9991836547851562 3 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 37.07464296494664 0.07877380486334713 1 E{I|L}{M(Oxidation (M))|F}YN{I|L} 6 3 53.933 0 0 4.481 0 0 406.1872730939469 0 406.1872730939469 0 43.75569708000178 0 0 0 1.8807196863200843 0 0 0 + E{I|L}{M(Oxidation (M))|F}YN{I|L} 4.481 + + 250 NaN NaN 130210.8 NaN 12441 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15699 67.667 NaN 514000 35 0 27083 0.261 + 1269 AYLVYYNEF 9 96 591.2792658929294 1180.5439788526587 2 591.2787475585938 MULTI HCD FTMS 0 0 0 15695 148618.390625 0.44286214343635333 -8 0.212127685546875 4 Unmodified _AYLVYYNEF_ REV__ENSG00000161958|ENST00000293829|FGF11;REV__ENST00000575310.1_1_17:7324913-7346173:+|nuORF;REV__ENST00000575331.1_1_17:7344773-7346173:+|nuORF 29.081581746732265 0.1154664336125038 1 AY{I|L}E[DV]E{I|L} 8 -1 53.84 0 0 4.5606 0 0 0 245.05660425357658 245.05660425357658 18.727799860549894 0 0 0 0 2.344187677400525 1.5228787452803376 0 0 AY{I|L}E[DV]E{I|L} 4.5606 - 793 + NaN NaN 165733.1 NaN 12442 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15700 67.67 NaN 185970 35 0 13495 0.261 + 7179 FSLEEWEFL 9 72 600.2842547781815 1198.553956623163 2 600.283935546875 MULTI HCD FTMS 0 0 0 15695 90411.4921875 0.3626475332403975 -5 0.12259674072265625 5 Unmodified _FSLEEWEFL_ ENSG00000197124|ENST00000397165|ZNF682 32.30548876998284 0.10066689432505688 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{M(Oxidation (M))|F}T 10 4 + 59.715 0 0 4.9823 4.9823 87.134 0 0 0 4.215613601963511 32.40803747765064 4.215613601963511 9.697529756587016 0 1.6861818737241734 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{M(Oxidation (M))|F}T;AYHH{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HHYYAK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HA]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WH]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH[DV]P{I|L}{M(Oxidation (M))|F}T;{[QN]|[E{I|L}]|[KN]}{[YC]|[HE]}[DV]P{I|L}{M(Oxidation (M))|F}T;[YN][KA][DV]E{I|L}{M(Oxidation (M))|F}T;[YN][WY][HA]AK{M(Oxidation (M))|F} 4.9823;4.1732;4.0722;3.9749;3.6811;3.521;3.2044;1.1186;1.0437;0.67862 -;-;-;-;-;-;-;-;-;- 426 NaN NaN 124260.1 NaN 12443 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15701 67.674 NaN 221340 35 0 78201 0.261 -1 AYPPAPFMHIL 11 53 636.8260658958287 1271.6375788584573 2 636.8260498046875 MULTI HCD FTMS 0 0 0 15695 42655.21875 0.46284298257125156 7 -0.16529083251953125 6 Oxidation (M) _AYPPAPFM(Oxidation (M))HIL_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 6.723162845929126 0.38943515815631113 1 P{[ES]|[DT]|[{I|L}C]} 3 -1 8.9524 0 0 0.70401 0 0 940.4844837873062 0 940.4844837873062 0 3.4678748622465623 0 0 0 0 0 0 0 P{[ES]|[DT]|[{I|L}C]} 0.70401 - 7 NaN NaN 118615.3 NaN 12444 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15702 67.677 NaN 93533 35 0 10916 0.261 + 25864 SMRFEKCGMS 10 41 588.2552572042141 NaN 0 588.2549438476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SMRFEKCGMS_ ENST00000485981.5_1_9:4635336-4666313:-|nuORF;ENST00000498087.5_1_9:4635336-4666491:-|nuORF 5.296884461304476 0.3356508900602619 1 {M(Oxidation (M))|F}Q 2 9 9.464 0 0 0.80579 0 0 236.07950889571174 660.3006075494749 896.3801164451866 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Q 0.80579 - 5 + NaN NaN 90056.6 NaN 12445 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15703 67.68 NaN 96945 35 0 5578.4 0.262 -1 WCRDCCMWT 9 37 638.7225341796875 NaN 0 638.7225341796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _WC(Carbamidomethyl (C))RDCCM(Oxidation (M))WT_ ENST00000531002.1_1_11:30605754-30618795:+|nuORF 0.5247636613948944 0.2927039108006614 1 {M(Oxidation (M))|F} 1 -1 9.6041 0 0 0.75301 0 0 280.10032118964983 845.235361340396 1125.335682530046 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.75301 + + 1 + NaN NaN 99065.5 NaN 12446 3255 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15705 67.685 NaN 2445400 35 0 365750 0.327 + 33361 YGHLELIQL 9 104 543.3031228870129 1084.5916928408258 2 543.3033447265625 MULTI HCD FTMS 0 0 0 15704 703144.6875 0.4223204088637804 2 -0.05295562744140625 1 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 99.79894945604345 0.0042691968066200965 1 {I|L}DE{I|L}{I|L}Q{I|L} 7 4 67.731 0 0 6.2448 0 0 242.12645156074376 0 242.12645156074376 0 47.174690354091155 0 0 0 2.0994850021680094 0 0.5629529932484498 0.3807196863200844 {I|L}DE{I|L}{I|L}Q{I|L} 6.2448 - 2977 NaN NaN 452684.8 NaN 12447 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15706 67.69 NaN 2467200 35 0 297730 0.261 + 7675 FYLEGGFSKF 10 102 597.7950511296735 1193.575549326147 2 597.7952270507812 MULTI HCD FTMS 0 0 0 15704 447997 0.10779010047163297 -7 0.1857757568359375 2 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 151.47984550603806 1.6769878081458435E-07 1 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 90.72 0 0 7.6007 7.6007 86.467 0 0 0 11.144141363238646 1.1968664142717103 1.1968664142717103 1.1968664142717103 0 3.048455006504028 0 1.829689690656103 0.28872548999643577 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 7.6007;7.5004;7.4561;7.3957;7.3515;6.8292;6.552;6.4516;6.4473;6.4296 -;-;-;-;+;+;-;-;-;- + 11459 + NaN NaN 463640.4 NaN 12448 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15707 67.693 NaN 863350 35 0 168960 0.261 + 11068 IYGLLKNPF 9 77 532.8107588434349 NaN 0 532.8107299804688 PEAK HCD FTMS 0 0 0 15704 100943.515625 0.2717938774126159 1 -0.0298309326171875 3 Unmodified _IYGLLKNPF_ ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF;nc|ENSG00000136758|Q96TA2-3|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant 154.46347324262513 2.1807464064502986E-19 1 YG{I|L}{I|L}KNP 7 2 69.602 0 0 6.5439 0 0 113.08729338340557 162.05585657291252 275.1431499563181 0 0 0 0 0 3.1549471895720984 0 0 0.8851518780601924 + YG{I|L}{I|L}KNP 6.5439 + + 486 + NaN NaN 204395 NaN 12449 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15708 67.697 NaN 879680 35 0 76169 0.261 -1 0 89 576.3086234746577 2301.2053880322305 4 576.3090209960938 MULTI HCD FTMS 0 0 0 15704 42615.43359375 0.08085553179545267 -7 0.1857757568359375 4 NaN NaN 1 {M(Oxidation (M))|F}Q{I|L} 3 -1 38.5 0 0 1.673 0 0 1894.9830582159261 0 1894.9830582159261 0 21.53930300355142 0 0 0 0.805462187404089 0 0 0.4247425010840047 {M(Oxidation (M))|F}Q{I|L} 1.673 - 343 NaN NaN 213458.2 NaN 12450 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15709 67.7 NaN 316620 35 0 32646 0.265 + -1 AYFDRCTQC 9 61 407.49897883244 1219.47510709752 3 407.83355712890625 MULTI HCD FTMS 0 0 0 15704 37364.2734375 0.34957784981525675 -7 0.1857757568359375 5 2 Carbamidomethyl (C) _AYFDRC(Carbamidomethyl (C))TQC(Carbamidomethyl (C))_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 7.101721422024254 0.29718071671418667 1 AY 2 -1 42.206 0 0 3.461 0 0 0 982.3538319555371 982.3538319555371 28.711375162600703 0 0 0 0 0.4247425010840047 2 0 0 AY 3.461 + + 51 + NaN NaN 137949.9 NaN 12451 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15710 67.703 NaN 161520 35 0 17975 0.261 + 11165 IYIVGGCLHEL 11 46 608.8228831783716 1215.6312134235432 2 609.3243408203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _IYIVGGCLHEL_ ENSG00000087448|ENST00000381271|KLHL42 27.088373467376528 0.22106052561220446 1 [Y{I|L}]{I|L}VG 5 6 58.456 0 0 4.8087 0 0 0 667.2890417273205 667.2890417273205 53.85151878060192 0 0 0 0 1.9247425010840047 1.6989700043360187 0 0 + [Y{I|L}]{I|L}VG 4.8087 + + 23 + NaN NaN 101428.7 NaN 12452 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15711 67.707 NaN 92795 35 0 10197 0.264 + 24478 RYLDVSILGKF 11 35 437.5866385607105 1309.7380862823316 3 437.5867004394531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 2.2527281973983926 0.4090409658946738 1 {I|L} 1 10 14.604 0 0 1.115 0 0 1178.6440291307674 0 1178.6440291307674 0 2.614393726401687 0 0 0 0 0 0 0 + {I|L} 1.115 + + 6 + NaN NaN 100065.6 NaN 12453 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15712 67.71 NaN 131370 35 0 10109 0.261 + 26246 SQEEEKGAEYV 11 45 634.7868041992188 NaN 0 634.7868041992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _SQEEEKGAEYV_ ENSG00000006747|ENST00000297029|SCIN;nc|ENSG00000006747|Q9Y6U3-3|SCIN 2.282774691075616 0.33564456907475565 1 {M(Oxidation (M))|F} 1 11 7.4743 0 0 0.59059 0 0 181.07630799108648 934.3861788385374 1115.462486829624 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.59059 - 5 + NaN NaN 118011.8 NaN 12454 3256 15704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15714 67.715 NaN 20435000 35 0 2982500 0.327 + 1151 AYLESFYKF 9 93 584.289645907993 1166.5647388827858 2 584.2899780273438 MULTI HCD FTMS 0 0 0 15713 18343220 0.9948855371964925 -1 0.0298309326171875 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 129.39 0 0 11.091 11.091 95.463 0 0 0 64.53267166238463 14.973024840566467 14.973024840566467 10.817685518174926 0 3.2302046884880937 2 0.9698565171985376 0.3054621874040891 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{M(Oxidation (M))|F}SYK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K 11.091;10.164;9.4983;9.4645;9.3289;9.1326;9.1205;9.0359;8.972;8.9199 +;+;-;-;-;-;-;-;-;- + 8995 + NaN NaN 635760.9 NaN 12455 3257 15713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15715 67.719 NaN 313530 35 0 131480 0.261 + 14986 LLKQLKKLF 9 69 565.8868587361234 NaN 0 565.8868408203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLKQLKKLF_ REV__ENSG00000214954|ENST00000448384|LRRC69 2.0597508629832335 0.2852655770354268 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.40753 0 0 165.38676357825278 814.3124483697874 979.6992119480401 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.40753 + + 19 + NaN NaN 127068.5 NaN 12456 3257 15713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15716 67.723 NaN 542830 35 0 30837 0.261 + 7166 FSHLPPSEEF 10 77 595.2807450819678 1188.5469372307355 2 595.2810668945312 MULTI HCD FTMS 0 0 0 15713 76359.9453125 0.35513192685572303 1 -0.02312469482421875 3 Unmodified _FSHLPPSEEF_ REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|22|2|anti-sense 22.736283301280096 0.29844449404982915 1 YYV{I|L}{[CA]|SS}E{I|L}SE 10 -1 + 51.189 0 0 4.3069 4.3069 81.634 0 0 0 3.0102999566398125 12.896358526101679 3.0102999566398125 3.0102999566398125 0 0.3252574989159953 2 0.7302046884880937 0 YYV{I|L}{[CA]|SS}E{I|L}SE;[YV]Y{I|L}{[CA]|SS}E{I|L}SE;YYV{[WT]|[RM]}E{I|L}SE;[YV]Y{[WT]|[RM]}E{I|L}SE;YYV[HK][YT]SE;YYV[HK][HV]DE;YYV{I|L}{[CA]|SS}[{I|L}T]DE;YYV{I|L}[NS]{[QS]|[NT]}SE;[YV]Y[HK][YT]SE;[YV]Y[HK][HV]DE 4.3069;4.0536;4.0106;3.7573;2.9803;2.9599;2.9214;2.8188;2.727;2.7066 -;-;-;-;-;-;-;-;-;- 806 NaN NaN 170697.6 NaN 12457 3257 15713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15717 67.727 NaN 1189300 35 0 135070 0.261 + 18726 MYTKLFVGF 9 106 561.2887753749021 1120.5629978166041 2 561.2892456054688 MULTI HCD FTMS 0 0 0 15713 617491 0.7745731827879804 3 -0.06932830810546875 4 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 106.94017166704063 0.003441928997083001 1 [Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 85.601 0 0 7.6391 7.6391 94.916 0 0 0 7.147642715192504 68.60293403416298 7.147642715192504 31.84955642535897 0 2.7614393726401687 0 1.416386562212267 0 + + [Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}G[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VG{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{M(Oxidation (M))|F} 7.6391;4.7968;2.9891;1.5809 +;-;-;- + 1634 NaN NaN 266034.2 NaN 12458 3257 15713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15718 67.73 NaN 244860 35 0 31297 0.264 + 33233 YFETYREVI 9 49 407.2038745247124 NaN 0 407.33673095703125 PEAK HCD FTMS 0 0 0 15713 31666.447265625 0.9627998977176377 -4 0.1229095458984375 5 Unmodified _YFETYREVI_ REV__ENSG00000163110|ENST00000317968|PDLIM5;REV__nc|ENSG00000163110|Q96HC4-2|PDLIM5;REV__nc|ENSG00000163110|Q96HC4-3|PDLIM5;REV__nc|ENSG00000163110|Q96HC4-4|PDLIM5;REV__nc|ENSG00000163110|Q96HC4-6|PDLIM5;REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5 2.9952420565917617 0.2807323172627736 1 R 1 -1 5.6515 0 0 0.69566 0 0 356.1587123289185 297.11008630924067 653.2687986381592 0 0 0 0 0 0 0 0 0.28872548999643577 R 0.69566 + + 11 + NaN NaN 118238.2 NaN 12459 3257 15713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15719 67.733 NaN 67115 35 0 4459.1 0.261 -1 0 42 509.4046936035156 NaN 0 509.4046936035156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 V 1 -1 6.9897 0 0 0.68742 0 0 673.6049189435563 241.09823023013908 914.7031491736954 0 0 0 0 0 0 0 0 0 V 0.68742 - 6 + NaN NaN 85117.7 NaN 12460 3257 15713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15721 67.738 NaN 770760 35 0 65229 0.325 + 13123 KYLINLETL 9 89 553.8263774480523 1105.6382019629045 2 553.8265991210938 MULTI HCD FTMS 0 0 0 15720 547666.125 0.7670162943272717 3 -0.0693206787109375 1 Unmodified _KYLINLETL_ ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant 157.7952019732125 5.857147217999733E-07 1 [YK]{I|L}{I|L}N{I|L}ET{I|L} 9 0 + 96.239 0 0 8.7044 8.7044 92.557 0 0 0 7.816658315635081 18.974563837277373 7.816658315635081 9.208187539523749 0 2.5356668758921828 0 0.4247425010840047 1.6791746928241125 + + [YK]{I|L}{I|L}N{I|L}ET{I|L};[YK]{I|L}{I|L}GG{I|L}ET{I|L};{[QN]|[E{I|L}]|[KN]}T{I|L}N{I|L}YK{I|L};[{I|L}T]E{I|L}N{I|L}YK{I|L};{[QN]|[E{I|L}]|[KN]}T{I|L}N{I|L}{I|L}YK;[{I|L}T]E{I|L}N{I|L}{I|L}YK;{[QN]|[E{I|L}]|[KN]}T{I|L}N{I|L}Y{I|L}K;{[QN]|[E{I|L}]|[KN]}TN{I|L}{I|L}YK{I|L};[{I|L}T]E{I|L}N{I|L}Y{I|L}K;[{I|L}T]EN{I|L}{I|L}YK{I|L} 8.7044;7.8715;6.2094;6.1218;5.9146;5.827;5.615;5.5414;5.5274;5.4538 +;-;-;-;-;-;-;-;-;- + 1489 NaN NaN 198407.5 NaN 12461 3258 15720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15722 67.743 NaN 450190 35 0 45108 0.261 + 4955 FASSFKIVL 9 75 506.2975799322659 1010.5806069313318 2 506.2977600097656 MULTI HCD FTMS 0 0 0 15720 213718.96875 0.6580814659565155 -5 0.14603424072265625 2 Unmodified _FASSFKIVL_ ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 89.40071534611396 0.0045416704840156395 1 {[MS]|[{M(Oxidation (M))|F}A]}SS{M(Oxidation (M))|F}K{I|L}V{I|L} 9 0 + 78.765 0 0 7.794 7.794 96.585 0 0 0 7.147642715192504 58.47418457616534 7.147642715192504 78.76464070433734 0 2.25 0 1.341129063296272 0 + + {[MS]|[{M(Oxidation (M))|F}A]}SS{M(Oxidation (M))|F}K{I|L}V{I|L} 7.794 + + 168 NaN NaN 159501.1 NaN 12462 3258 15720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15723 67.746 NaN 472320 35 0 27474 0.261 + 2902 DYSPYFKTI 9 84 567.2791460627044 1132.5437391922087 2 567.279296875 MULTI HCD FTMS 0 0 0 15720 198133.390625 0.008035863462540085 174 -4.803062438964844 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 65.47368725323818 0.010552856507075443 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 56.384 0 0 4.9785 4.9785 87.392 0 0 0 19.03598431600421 10.640107023097599 10.640107023097599 10.640107023097599 0 1.8851518780601921 1.6989700043360187 0.3252574989159953 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F} 4.9785;4.0391;3.2977;2.3582 +;-;-;- + 384 NaN NaN 157029.2 NaN 12463 3258 15720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15724 67.75 NaN 208330 35 0 50599 0.262 + 26106 SPISAQDLL 9 40 472.25831507852945 942.5020772238589 2 472.25823974609375 MULTI HCD FTMS 0 0 0 15720 94885.359375 0.6094270846714109 4 -0.082366943359375 4 Unmodified _SPISAQDLL_ ENSG00000170265|ENST00000610704|ZNF282;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant 19.361941925380144 0.1930734562688509 1 ASE[HV]SA{I|L} 8 7 29.698 0 0 3.151 0 0 130.10829167874016 0 130.10829167874016 0 -6.091896990114236 -6.091896990114236 0 0 0.3494850021680094 0 0.3807196863200844 0 ASE[HV]SA{I|L} 3.151 - 66 + NaN NaN 108651 NaN 12464 3258 15720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15725 67.753 NaN 198710 35 0 29332 0.261 + 13056 KYLDEFLLNKI 11 50 465.934070549389 1394.780382248367 3 465.9346008300781 MULTI HCD FTMS 0 0 0 15720 99653.9453125 0.7451298481292579 3 -0.0693206787109375 5 Unmodified _KYLDEFLLNKI_ ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF;nc|ENSG00000099331|Q13459-2|MYO9B 11.798310955661274 0.3542833415824928 1 {M(Oxidation (M))|F}{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L} 6 5 39.213 0 0 2.8114 0 0 648.3099232404312 0 648.3099232404312 0 23.728721920568248 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L} 2.8114 + + 37 NaN NaN 107426.4 NaN 12465 3258 15720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15726 67.756 NaN 180260 35 0 16110 0.261 + 33070 YDINGGKAYL 10 76 557.2821841152138 1112.5498152972275 2 557.2836303710938 MULTI HCD FTMS 0 0 0 15720 41219.37890625 0.1615980449017636 8 -0.1957550048828125 6 Unmodified _YDINGGKAYL_ REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1 21.536976647645854 0.3096624038397699 1 DY{I|L} 3 -1 35.445 0 0 3.186 0 0 703.3641475545505 0 703.3641475545505 0 14.018637558036673 0 0 0 0.9247425010840047 0 0 0 DY{I|L} 3.186 - 154 NaN NaN 108848.7 NaN 12466 3258 15720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15728 67.761 NaN 1195600 35 0 80691 0.327 + 6335 FPFYYEIKM 9 95 627.2987212994602 1252.5828896657204 2 627.2984008789062 MULTI HCD FTMS 0 0 0 15727 480190.1875 0.5712710348766339 -4 0.105987548828125 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 106.94017166704063 0.003441928997083001 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 79.355 0 0 6.3353 6.3353 84.11 0 0 0 3.027646714607357 1.0822685886482475 1.0822685886482475 1.0822685886482475 0 2.6549471895720984 1.6989700043360187 0.6307196863200843 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYYEP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE;{M(Oxidation (M))|F}P[NP]VYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKCV[VS]V[DP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKCV{[DA]|[EG]}V[DP] 6.3353;6.2489;6.0936;5.9361;5.5427;4.5783;4.1791;4.1609;4.1106;4.1106 +;-;+;-;-;-;-;-;-;- + 2992 NaN NaN 265314.6 NaN 12467 3259 15727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15729 67.766 NaN 619230 35 0 34919 0.261 + 27186 SYNNFFRMF 9 90 621.2738121112648 1240.5330712893294 2 621.2744140625 MULTI HCD FTMS 0 0 0 15727 259480.6875 0.05133688883410788 61 -1.6377792358398438 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 85.012 0 0 6.8528 6.8528 89.502 0 0 0 10.577053078093215 74.75083939574367 10.577053078093215 9.208187539523749 0 3 0 0.9194451763165201 1.579689690656103 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY;[YG][SG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY;{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY;{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG][SG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}RMY;[YG][SG]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.8528;6.1106;6.1106;5.7825;5.2689;5.0402;5.0402;4.7225;4.1986;3.8809 +;-;-;-;-;-;-;-;-;- + 2180 NaN NaN 171428.4 NaN 12468 3259 15727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15730 67.77 NaN 313230 35 0 21462 0.261 + 4947 FAQYAVTFDF 10 65 604.784759791264 1207.554966649328 2 605.26953125 MULTI HCD FTMS 0 0 0 15727 78379.96875 1 0 0 3 Unmodified _FAQYAVTFDF_ ENSG00000157827|ENST00000288670|FMNL2;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2 9.38312468134398 0.42334543440173333 1 D{M(Oxidation (M))|F}NQT{I|L} 6 8 40.706 0 0 3.371 0 0 165.11391028390932 321.0877712249967 486.201681508906 0 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0.3494850021680094 D{M(Oxidation (M))|F}NQT{I|L} 3.371 - 541 + NaN NaN 134838.3 NaN 12469 3259 15727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15731 67.773 NaN 314100 35 0 55373 0.261 + 24145 RYDNVTILF 9 46 570.8061764844165 1139.5978000356329 2 570.8065795898438 MULTI HCD FTMS 0 0 0 15727 97150.203125 0.8362724058591939 2 -0.04625701904296875 4 Unmodified _RYDNVTILF_ ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1 27.628801355627647 0.12213550946336599 1 T{I|L}{I|L}{M(Oxidation (M))|F} 4 5 54.68 0 0 4.7982 0 0 647.3038807599625 0 647.3038807599625 0 47.69077524932108 0 0 0 1.8494850021680094 0 0.4247425010840047 0 + T{I|L}{I|L}{M(Oxidation (M))|F} 4.7982 + + 39 NaN NaN 130631.9 NaN 12470 3259 15727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15732 67.776 NaN 193520 35 0 16761 0.261 + 20008 NYIGISLRI 9 58 524.8111696594632 1047.6077863857263 2 524.8115234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 32.037481411007896 0.10189719824197178 1 [YN]{I|L}{[VA]|[{I|L}G]}S{I|L}R{I|L} 9 0 + 52.584 0 0 5.0194 5.0194 83.611 0 0 0 0.41447825603967203 0.41447825603967203 0.41447825603967203 4.745462655597095 0 2.024227503252014 2 0 0 + + [YN]{I|L}{[VA]|[{I|L}G]}S{I|L}R{I|L};[YN]{I|L}{[VA]|[{I|L}G]}R{[TV]|[{I|L}S]}{I|L};[Y{I|L}]N{[VA]|[{I|L}G]}S{I|L}R{I|L};[Y{I|L}]N{[VA]|[{I|L}G]}R{[TV]|[{I|L}S]}{I|L} 5.0194;4.5665;3.7994;3.3464 +;-;-;- + 217 NaN NaN 109226.2 NaN 12471 3259 15727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15733 67.78 NaN 187220 35 0 14508 0.261 + -1 ISRCTDLSFG 10 63 578.2776205517467 1154.5406881702934 2 578.2774047851562 MULTI HCD FTMS 0 0 0 15727 33610.98046875 0.46137766022134347 -3 0.076019287109375 6 Carbamidomethyl (C) _ISRC(Carbamidomethyl (C))TDLSFG_ REV__ENSG00000256812|ENST00000457326|CAPNS2 10.073929032068715 0.4168838835836452 1 D{I|L}{I|L} 3 -1 21.682 0 0 1.878 0 0 795.3354359357437 0 795.3354359357437 0 10.48455006504028 0 0 0 0 0 0 0 D{I|L}{I|L} 1.878 - 84 NaN NaN 111451.4 NaN 12472 3259 15727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15735 67.784 NaN 496650 35 0 137010 0.327 + 10063 IFFENHPYF 9 58 607.287363119328 1212.560173305456 2 607.2872314453125 MULTI HCD FTMS 0 0 0 15734 295220.65625 0.1344268974546395 -7 0.19223785400390625 1 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 78.7280429016045 0.006263961847259105 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENH 6 3 60.438 0 0 4.9843 0 0 0 422.17174400853895 422.17174400853895 39.011007396375135 0 0 0 0 1.6989700043360187 0 0.3494850021680094 0.4247425010840047 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENH 4.9843 + + 116 + NaN NaN 153362.1 NaN 12473 3260 15734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15736 67.789 NaN 399770 35 0 62459 0.263 + 11394 IYPHGLVLL 9 64 512.813002013963 1023.611451094726 2 512.8131103515625 MULTI HCD FTMS 0 0 0 15734 228672.1875 0.7441033386526353 5 -0.11278533935546875 2 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 45.7499826716795 0.03894913563566938 1 {I|L}Y[VP][HA]V{I|L}{I|L} 9 3 + 50.084 0 0 4.8929 4.8929 86.981 0 0 0 37.164537177296495 9.009461452434238 9.009461452434238 9.771212547196626 0 1.774227503252014 2 0 0 {I|L}Y[VP][HA]V{I|L}{I|L};{I|L}Y[VP][HV]A{I|L}{I|L};{I|L}Y[VP][HV]{I|L}A{I|L} 4.8929;3.9383;3.3066 -;-;- 131 + NaN NaN 143282.5 NaN 12474 3260 15734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15737 67.793 NaN 451970 35 0 61181 0.261 -1 MMAVMVAALM 10 79 550.2556557650513 1098.4967585969025 2 550.7576293945312 MULTI HCD FTMS 0 0 0 15734 106617.828125 0.5613885626334252 -2 0.04620361328125 3 2 Oxidation (M) _MM(Oxidation (M))AVM(Oxidation (M))VAALM_ ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11 7.910154910731844 0.4334339971971892 1 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9089 0 0 820.3340521533463 0 820.3340521533463 0 6.588709367037282 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9089 + + 183 + NaN NaN 151242.8 NaN 12475 3260 15734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15738 67.796 NaN 181810 35 0 43204 0.261 + 16443 LSPINESAL 9 46 472.25831507852945 942.5020772238589 2 472.7503356933594 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LSPINESAL_ REV__ENSG00000100614|ENST00000395076|PPM1A;REV__nc|ENSG00000100614|P35813-3|PPM1A 14.838274106304384 0.23215694253501695 1 ASA 3 -1 23.06 0 0 2.4466 0 0 130.10802579895568 580.2743624322874 710.3823882312431 0 0 0 0 0 0.3054621874040891 0 0.3807196863200844 0 ASA 2.4466 - 22 + NaN NaN 104975.3 NaN 12476 3260 15734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15739 67.799 NaN 275240 35 0 58451 0.261 -1 TAMDVVYAL 9 62 499.7466991268183 997.4788453204367 2 499.7470397949219 MULTI HCD FTMS 0 0 0 15734 41542.19140625 0.045690698352880296 37 -1.0106430053710938 5 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 1 VYA{I|L} 4 -1 42.423 0 0 4.253 0 0 533.2153349214691 0 533.2153349214691 0 22.245462655597095 0 0 0 1.3494850021680094 0 0 0 VYA{I|L} 4.253 + + 89 NaN NaN 137820.4 NaN 12477 3260 15734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15740 67.803 NaN 186430 35 0 15735 0.261 + 33896 YLNSNKLDF 9 72 557.2821841152138 1112.5498152972275 2 557.2821655273438 MULTI HCD FTMS 0 0 0 15734 17349.2734375 0.06801676159028672 10 -0.25301361083984375 6 Unmodified _YLNSNKLDF_ ENSG00000177731|ENST00000327031|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII 21.74664581756881 0.17247014374749275 1 VDY{I|L} 4 8 37.691 0 0 3.3878 0 0 604.2957630841812 0 604.2957630841812 0 12.004412890910956 0 0 0 0.9247425010840047 0 0 0 VDY{I|L} 3.3878 - 209 NaN NaN 112510.8 NaN 12478 3260 15734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15742 67.807 NaN 1720100 35 0 194740 0.325 + 13229 KYMDIEFDF 9 94 612.2680883328802 1222.5216237325603 2 612.268310546875 MULTI HCD FTMS 0 0 0 15741 955894.5625 0.3666009144365128 12 -0.3058624267578125 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 79.693 0 0 6.5187 6.5187 84.508 0 0 0 1.140078085766092 9.361818737241734 1.140078085766092 1.140078085766092 0 2.531234684152075 0 1.6298545532927078 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}ET{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]AG;[{M(Oxidation (M))|F}E]D{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K 6.5187;6.4255;5.9258;3.7692;3.2965;2.2842;2.2016;1.7378;1.6547;1.5425 +;-;-;-;-;-;-;-;-;- + 3173 NaN NaN 350521.4 NaN 12479 3261 15741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15743 67.812 NaN 527610 35 0 26916 0.261 + 3890 EPPFPDLYGF 10 89 591.2792658929294 1180.5439788526587 2 591.27978515625 MULTI HCD FTMS 0 0 0 15741 241873.59375 0.7207496846003392 -2 0.04625701904296875 2 Unmodified _EPPFPDLYGF_ REV__ENSG00000018236|ENST00000551295|CNTN1;REV__nc|ENSG00000018236|Q12860-2|CNTN1;REV__nc|ENSG00000018236|Q12860-3|CNTN1 19.256988751693697 0.33098864134661865 1 AY[HV][VS]Y{I|L} 8 -1 40.104 0 0 3.3971 0 0 0 245.05672632388908 245.05672632388908 15.63994702129584 0 0 0 0 1.6549471895720984 1.5228787452803376 0.2742275032520141 0 AY[HV][VS]Y{I|L} 3.3971 - 201 + NaN NaN 155825 NaN 12480 3261 15741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15744 67.816 NaN 734690 35 0 225530 0.261 + 1318 AYPAIRYLL 9 76 540.3161748849977 1078.6177968367954 2 540.31640625 MULTI HCD FTMS 0 0 0 15741 211549.265625 0.6430574001206212 -6 0.15224456787109375 3 Unmodified _AYPAIRYLL_ ENSG00000132676|ENST00000368336|DAP3;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3 54.773552608820026 0.024892918755467567 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L} 9 0 + 57.22 0 0 5.305 5.305 86.766 0 0 0 8.2306842758112 26.343115646969935 8.2306842758112 9.208187539523749 0 1.992992819099939 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VG]Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VP]{I|L}[HV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA[VP]{I|L}{I|L}[HV] 5.305;4.4513;2.6904;1.9478 +;-;-;- + 321 NaN NaN 193422.5 NaN 12481 3261 15741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15746 67.821 NaN 4528900 35 0 589740 0.327 + 7676 FYLEGGFSKF 10 98 597.7950511296735 1193.575549326147 2 597.7952880859375 MULTI HCD FTMS 0 0 0 15745 3461158.25 0.8327702987201283 -1 0.0130462646484375 1 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 151.47984550603806 1.6769878081458435E-07 1 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 92.889 0 0 7.7824 7.7824 86.407 0 0 0 11.311508337315175 0.4654532639100637 0.4654532639100637 0.4654532639100637 0 3.048455006504028 0 1.9049471895720984 0.3054621874040891 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F}A[DG]SK{M(Oxidation (M))|F} 7.7824;7.7434;7.7006;7.5945;7.5516;7.011;6.9425;6.8997;6.7389;6.6968 -;-;-;+;-;+;-;-;-;- + 9405 + NaN NaN 538928.1 NaN 12482 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15747 67.825 NaN 1136900 35 0 171230 0.261 + 33362 YGHLELIQL 9 96 543.3031228870129 1084.5916928408258 2 543.30322265625 MULTI HCD FTMS 0 0 0 15745 566171.625 0.34005210649774126 8 -0.21685028076171875 2 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 65.23502041540118 0.010630085227462206 1 {I|L}DE{I|L}{I|L}Q{I|L} 7 4 62.44 0 0 5.757 0 0 242.12664992500157 0 242.12664992500157 0 46.721675119240516 0 0 0 1.9802046884880937 0 0.25 0.3807196863200844 {I|L}DE{I|L}{I|L}Q{I|L} 5.757 - 1391 NaN NaN 257259.6 NaN 12483 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15748 67.829 NaN 579460 35 0 134950 0.262 + 10781 ISPGRYFLL 9 65 533.308312078647 1064.6020712240938 2 533.3082275390625 MULTI HCD FTMS 0 0 0 15745 189470.140625 0.14974898026706743 18 -0.49138641357421875 3 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 17.11289562659939 0.2125047172822487 1 [Y{I|L}]G{I|L}{I|L}KNC(Carbamidomethyl (C)) 8 7 47.969 0 0 4.5058 0 0 0 100.07396998801883 100.07396998801883 6.783343794609138 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]G{I|L}{I|L}KNC(Carbamidomethyl (C)) 4.5058 - 381 NaN NaN 171091 NaN 12484 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15749 67.832 NaN 630490 35 0 47866 0.261 + 11578 IYSTTLWHL 9 96 567.3028652740675 1132.5911776149348 2 567.3034057617188 MULTI HCD FTMS 0 0 0 15745 162252.6875 1 0 0 4 Unmodified _IYSTTLWHL_ ENSG00000004897|ENST00000066544|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;nc|ENSG00000004897|P30260-2|CDC27 57.47134341890925 0.0211188941628804 1 {I|L}YST[{I|L}T][H{I|L}]W 9 2 + 53.271 0 0 4.7035 4.7035 81.977 0 0 0 29.798480000691953 0.9716899430773367 0.9716899430773367 2.430380486862944 0 1.2302046884880937 1.5228787452803376 0.28872548999643577 0 {I|L}YST[{I|L}T][H{I|L}]W;{I|L}YST[{I|L}T]W[H{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AV[{I|L}T]GE[H{I|L}];{I|L}Y[DV]{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[H{I|L}];[Y{I|L}]SSP{I|L}[HA][{M(Oxidation (M))|F}V];{I|L}[HD]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K[{I|L}T];[YT]VSP{I|L}[HA][{M(Oxidation (M))|F}V] 4.7035;4.4889;1.8622;1.601;1.5852;0.37375;0.1053 -;+;-;-;-;-;- + 1320 + NaN NaN 177067.5 NaN 12485 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15750 67.836 NaN 429260 35 0 54818 0.261 + 25830 SLSTFQQMW 9 87 572.2593372112088 1142.5041214892176 2 572.261474609375 MULTI HCD FTMS 0 0 0 15745 84080.75 0.6290313266757767 5 -0.1373443603515625 5 Oxidation (M) _SLSTFQQM(Oxidation (M))W_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP 61.60191391372663 0.015340508911304802 1 {[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}W 9 0 + 61.891 0 0 5.4171 5.4171 85.125 0 0 0 3.4678748622465605 6.805234507957891 3.4678748622465605 6.805234507957891 0 2.004432191740108 0 0 0.3252574989159953 + + {[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}[PS]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}[{I|L}A]W;{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}[AG]Q{M(Oxidation (M))|F}W;{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}[PS]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}[{I|L}A]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[AG]Q{M(Oxidation (M))|F}[{I|L}A]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[AG]Q{M(Oxidation (M))|F}[PS]W;{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}[AG][AG]{M(Oxidation (M))|F}W 5.4171;4.8215;4.8215;4.6111;4.6111;4.0155;4.0155;4.0155;4.0155;3.5243 +;-;-;-;-;-;-;-;-;- + 783 + NaN NaN 146596.5 NaN 12486 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15751 67.839 NaN 227850 35 0 15502 0.261 + -1 SLCSHYYIL 9 67 578.2776205517467 1154.5406881702934 2 578.7779541015625 MULTI HCD FTMS 0 0 0 15745 32307.83203125 0.42447354237296314 -1 0.0130462646484375 6 Carbamidomethyl (C) _SLC(Carbamidomethyl (C))SHYYIL_ REV__ENST00000469878.5_1_1:155106165-155106540:+|nuORF 11.640296217721598 0.25978676193971967 1 D{I|L}{I|L} 3 -1 31.682 0 0 2.7442 0 0 795.3327308110838 0 795.3327308110838 0 26.10924374808178 0 0 0 0.5 0 0.3494850021680094 0 D{I|L}{I|L} 2.7442 - 23 NaN NaN 130596.4 NaN 12487 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15752 67.842 NaN 111860 35 0 16857 0.262 + 21854 QAVQELVSL 9 41 493.7794246431072 985.5442963530144 2 493.7796630859375 MULTI HCD FTMS 0 0 0 15745 30865.615234375 0.1793555776751355 4 -0.1133880615234375 7 Unmodified _QAVQELVSL_ ENSG00000108784|ENST00000225927|NAGLU 8.155526934196011 0.2891920862272901 1 VS{I|L} 3 6 36.198 0 0 3.6729 0 0 668.3504407755967 0 668.3504407755967 0 36.197887582883936 0 0 0 1 0 0 0 + VS{I|L} 3.6729 + + 11 NaN NaN 92606.8 NaN 12488 3262 15745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15754 67.847 NaN 1775800 35 0 542370 0.326 + 24604 RYLPTGSFPF 10 82 592.8085720950354 1183.6025912568707 2 592.8088989257812 MULTI HCD FTMS 0 0 0 15753 1152171.25 0.20549559257850253 -6 0.13201141357421875 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 87.25819977447905 0.0012128544035916314 1 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 91.503 0 0 7.7309 7.7309 94.953 0 0 0 9.259687322722812 79.7466879234311 9.259687322722812 30.56933472159166 0 2.5 0 1.1861818737241734 0.3494850021680094 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{[RE]|[WV]}G{I|L}GP{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}GP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV][HV]G{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}{[{M(Oxidation (M))|F}D]|MM}G{I|L}GP{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}SGT[HV]K{M(Oxidation (M))|F};[YR]{I|L}{[{M(Oxidation (M))|F}D]|MM}{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}S[TP]{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F};[YR]{I|L}G[TP]S{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 7.7309;5.1482;4.7522;4.3847;4.0894;3.9709;3.9514;3.2724;2.9589;2.8953 +;-;-;-;-;-;-;-;-;- + 646 NaN NaN 364830.3 NaN 12489 3263 15753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15755 67.852 NaN 233250 35 0 22236 0.265 + -1 AYFDRCTQC 9 68 407.49897883244 1219.47510709752 3 407.498779296875 MULTI HCD FTMS 0 0 0 15753 156164.765625 1 0 0 2 2 Carbamidomethyl (C) _AYFDRC(Carbamidomethyl (C))TQC(Carbamidomethyl (C))_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 7.101721422024254 0.29718071671418667 1 AY 2 -1 39.693 0 0 3.2549 0 0 0 982.3538298818598 982.3538298818598 26.593793813122062 0 0 0 0 0.3494850021680094 2 0 0 AY 3.2549 + + 56 + NaN NaN 113473.6 NaN 12490 3263 15753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15756 67.855 NaN 368800 35 0 49298 0.261 + 25831 SLSTFQQMW 9 86 572.2593372112088 1142.5041214892176 2 572.2603149414062 MULTI HCD FTMS 0 0 0 15753 50240.51953125 0.37586321070664164 6 -0.160675048828125 3 Oxidation (M) _SLSTFQQM(Oxidation (M))W_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP 79.59630418116434 0.005983006570063981 1 {[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}W 9 0 + 54.88 0 0 4.8035 4.8035 82.035 0 0 0 1.4266750356873104 2.149640954996954 1.4266750356873104 2.149640954996954 0 2.004432191740108 0 0 0.3054621874040891 + + {[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}[{I|L}A]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}[PS]W;{[MS]|[{M(Oxidation (M))|F}A]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Q{M(Oxidation (M))|F}[PS]W;{[MS]|[{M(Oxidation (M))|F}A]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Q{M(Oxidation (M))|F}[{I|L}A]W;{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}[AG]Q{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}[PS]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}[{I|L}A]W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}[KG]{[QG]|[NA]};[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QQ{M(Oxidation (M))|F}W 4.8035;4.6153;4.6153;4.2096;4.2096;3.9975;3.8094;3.8094;3.7597;3.7351 +;-;-;-;-;-;-;-;-;- + 612 + NaN NaN 139897.7 NaN 12491 3263 15753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15757 67.859 NaN 157730 35 0 12118 0.261 + 31646 VYITGKEVFSF 11 53 645.3425179265266 1288.6704829198532 2 645.3426513671875 MULTI HCD FTMS 0 0 0 15753 123605.2109375 1 0 0 4 Unmodified _VYITGKEVFSF_ ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant 57.107585691075435 0.0522316747233038 1 [YV]{I|L}T[WK]V{M(Oxidation (M))|F}S 9 3 61.366 0 0 4.7619 0 0 0 162.05782582422526 162.05782582422526 47.09618702941345 0 0 0 0 2.4247425010840047 1.5228787452803376 0.3807196863200844 0 [YV]{I|L}T[WK]V{M(Oxidation (M))|F}S 4.7619 - 79 NaN NaN 109318 NaN 12492 3263 15753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15758 67.862 NaN 102310 35 0 6855.8 0.261 + 3373 EEQVFHFYW 9 49 642.7889287689069 1283.5633046046137 2 642.7899780273438 MULTI HCD FTMS 0 0 0 15753 26597.90625 0.3242555027436929 8 -0.2166595458984375 5 Unmodified _EEQVFHFYW_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 2.302733041254933 0.33356062215410776 1 W 1 8 16.237 0 0 1.265 0 0 360.1357114386839 734.3280733697874 1094.4637848084712 0 0 0 0 0 0.9247425010840047 0 0 0 + W 1.265 + + 4 + NaN NaN 94486.3 NaN 12493 3263 15753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15759 67.865 NaN 121710 35 0 5892 0.261 + 3712 ELWWAPPSWS 10 57 629.796818653497 NaN 0 629.537841796875 PEAK HCD FTMS 0 0 0 15753 11751.5966796875 1 0 0 6 Unmodified _ELWWAPPSWS_ chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|99 3.5964929083625545 0.337106189561315 1 TY 2 10 7.9588 0 0 0.63287 0 0 167.02776709039387 823.3924654596311 990.420232550025 0 0 0 0 0 0 0 0 0 TY 0.63287 - 26 + NaN NaN 97077.3 NaN 12494 3263 15753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15761 67.87 NaN 8563800 35 0 1219900 0.327 + 1152 AYLESFYKF 9 89 584.289645907993 1166.5647388827858 2 584.29052734375 MULTI HCD FTMS 0 0 0 15760 7164664 0.3885915663919623 6 -0.16709136962890625 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 129.88 0 0 11.134 11.134 95.561 0 0 0 64.7811332427244 14.973024840566453 14.973024840566453 11.141055156958302 0 3.2302046884880937 2 1.0189301784845295 0.3054621874040891 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F} 11.134;10.179;9.5897;9.3432;9.2338;9.1469;9.0413;8.972;8.5229;8.3985 +;+;-;-;-;-;-;-;-;- + 6629 + NaN NaN 496326.7 NaN 12495 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15762 67.875 NaN 926160 35 0 89264 0.261 + 18727 MYTKLFVGF 9 104 561.2887753749021 1120.5629978166041 2 561.2891845703125 MULTI HCD FTMS 0 0 0 15760 422080.59375 0.5294527513663811 10 -0.27275848388671875 2 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 155.02607137521346 3.513045939247001E-06 1 {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 97.406 0 0 8.6926 8.6926 88.66 0 0 0 83.42654397121706 9.304461535987443 9.304461535987443 2.156818820794939 0 3.079689690656103 0 0.8807196863200843 0 + + {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[DN]R[R{I|L}]{[ET]|[MV]}A{M(Oxidation (M))|F} 8.6926;8.5001;0.31978 +;+;- + 1451 + NaN NaN 222344.1 NaN 12496 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15763 67.879 NaN 504950 35 0 64950 0.262 + 3313 EEIDLRSVGW 10 81 602.3041934000676 1202.593833866935 2 602.3041381835938 MULTI HCD FTMS 0 0 0 15760 225644.40625 0.6894862861799967 1 -0.02686309814453125 3 Unmodified _EEIDLRSVGW_ ENSG00000110057|ENST00000227471|UNC93B1 87.25819977447905 0.0012128544035916314 1 {[QD]|[EN]|[WG]|[KD]|[RS]}QD[R{I|L}]WGW 9 4 + 58.055 0 0 4.8275 4.8275 81.612 0 0 0 1.217327760564686 4.23216075883186 1.217327760564686 1.217327760564686 0 2.1237125054200234 1.3010299956639813 1.9247425010840047 0 {[QD]|[EN]|[WG]|[KD]|[RS]}QD[R{I|L}]WGW;EE{I|L}D[R{I|L}]SVGW;{[CT]|[{M(Oxidation (M))|F}G]}GVC(Carbamidomethyl (C))K{M(Oxidation (M))|F}KG{[CT]|[{M(Oxidation (M))|F}G]};{[QD]|[EN]|[WG]|[KD]|[RS]}QD[R{I|L}]SRW;{[QD]|[EN]|[WG]|[KD]|[RS]}[YN]K{[HG]|PP}VGW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VC(Carbamidomethyl (C))K{M(Oxidation (M))|F}KG{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}GV[CG]K{M(Oxidation (M))|F}KG{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}GVC(Carbamidomethyl (C))K{[HG]|PP}VGW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VC(Carbamidomethyl (C))K{[HG]|PP}VGW;EE{I|L}D[R{I|L}]WG[VS] 4.8275;4.7263;4.4756;4.4154;3.8211;3.7915;3.7165;3.6832;3.6323;3.2483 -;+;-;-;-;-;-;-;-;- + 1343 NaN NaN 166738.1 NaN 12497 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15764 67.882 NaN 413690 35 0 26837 0.261 + 13124 KYLINLETL 9 89 553.8263774480523 1105.6382019629045 2 553.8265380859375 MULTI HCD FTMS 0 0 0 15760 143546.15625 0.20103898306983753 9 -0.2430572509765625 4 Unmodified _KYLINLETL_ ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant 137.42381684818497 0.00015474832393368816 1 {I|L}N{I|L}ET{I|L} 6 3 79.8 0 0 7.2175 0 0 404.24241835761876 0 404.24241835761876 0 41.487803220352355 0 0 0 2.1989700043360187 0 0.3494850021680094 1.316901560044258 + {I|L}N{I|L}ET{I|L} 7.2175 + + 1152 NaN NaN 159344.7 NaN 12498 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15765 67.886 NaN 162010 35 0 29428 0.264 + 7921 GAPGVRQF 8 48 416.2277890725714 NaN 0 416.5028381347656 PEAK HCD FTMS 0 0 0 15760 9369.974609375 0.5067669068093502 1 -0.02686309814453125 5 Unmodified _GAPGVRQF_ REV__nc|ENSG00000117385|Q32P28-3|P3H1 2.8892196856762586 0.38822285293237185 1 Y 1 -1 2.2185 0 0 0.26715 0 0 548.3049606140897 116.05059992008046 664.3555605341702 0 0 0 0 0 0 0 0 0 Y 0.26715 - 3 + NaN NaN 107941.1 NaN 12499 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15766 67.889 NaN 100050 35 0 15750 0.261 + -1 PDLFAISM 8 41 455.22394221731673 NaN 0 455.6600036621094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _PDLFAISM(Oxidation (M))_ REV__ENSG00000018280|ENST00000233202|SLC11A1;REV__ENST00000468221.5_1_2:219248908-219249148:+|nuORF;REV__ENST00000469449.1_1_2:219248824-219251606:+|nuORF;REV__ENST00000471875.5_1_2:219248977-219249704:+|nuORF;REV__ENST00000492413.5_1_2:219247091-219251606:+|nuORF;REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF;REV__SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant 2.302733041254933 0.38822285293237185 1 Y 1 -1 5.4846 0 0 0.60374 0 0 617.360163632096 124.99106775455313 742.3512313866491 0 0 0 0 0 0 0 0 0 Y 0.60374 - 2 + NaN NaN 97521.6 NaN 12500 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15767 67.892 NaN 84445 35 0 8551.3 0.261 -1 MPDVDFNL 8 38 483.71553412020637 965.4165153072128 2 483.71588134765625 MULTI HCD FTMS 0 0 0 15760 20848.673828125 0.3166151734850196 -16 0.390716552734375 7 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 10.823927491677226 0.514154816617796 1 D{M(Oxidation (M))|F}N{I|L} 4 -1 32.713 0 0 3.3885 0 0 458.18477065254064 0 458.18477065254064 0 25.723010016729653 0 0 0 0.5 0 0 0 D{M(Oxidation (M))|F}N{I|L} 3.3885 + + 18 NaN NaN 97406.5 NaN 12501 3264 15760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15769 67.897 NaN 1239900 35 0 76099 0.327 + 6336 FPFYYEIKM 9 97 627.2987212994602 1252.5828896657204 2 627.2987670898438 MULTI HCD FTMS 0 0 0 15768 666940.6875 0.7934437368099253 2 -0.06072235107421875 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 70.275 0 0 5.6104 5.6104 83.338 0 0 0 2.5173467579675446 5.343181179205061 2.5173467579675446 1.9453781259591096 0 2.6435078169319297 1.6989700043360187 0.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]P{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}[MN]E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]E{I|L}M{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC[VS]V[DP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC{[DA]|[EG]}V[DP] 5.6104;5.4551;5.4094;5.1838;4.7618;4.636;3.9002;3.8025;3.5368;3.5368 +;-;+;-;-;-;-;-;-;- + 5203 NaN NaN 275880.2 NaN 12502 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15770 67.902 NaN 280750 35 0 26682 0.262 + 4956 FASSFKIVL 9 62 506.2975799322659 1010.5806069313318 2 506.2973327636719 MULTI HCD FTMS 0 0 0 15768 138804 0.42740398914931677 2 -0.06072235107421875 2 Unmodified _FASSFKIVL_ ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 39.94969957227396 0.06557568441294001 1 {M(Oxidation (M))|F}SSS{I|L} 5 5 46.035 0 0 4.5553 0 0 471.34239394355626 0 471.34239394355626 0 30.629281735842717 0 0 0 0.5 0 0.7302046884880937 0 {M(Oxidation (M))|F}SSS{I|L} 4.5553 - 54 NaN NaN 126146.9 NaN 12503 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15771 67.906 NaN 587820 35 0 41516 0.261 + 2903 DYSPYFKTI 9 96 567.2791460627044 1132.5437391922087 2 567.2793579101562 MULTI HCD FTMS 0 0 0 15768 153807.671875 0.006238107805957639 181 -5.026161193847656 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 65.47368725323818 0.010552856507075443 1 M{M(Oxidation (M))|F}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K 7 4 54.39 0 0 4.8025 0 0 0 229.11971460513908 229.11971460513908 30.287618118533448 0 0 0 0 1.8169015600442577 1.3979400086720375 0.6307196863200843 0 M{M(Oxidation (M))|F}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K 4.8025 - 1300 + NaN NaN 181434.2 NaN 12504 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15772 67.909 NaN 420860 35 0 107680 0.261 + 10782 ISPGRYFLL 9 59 533.308312078647 1064.6020712240938 2 533.3086547851562 MULTI HCD FTMS 0 0 0 15768 108561.875 0.08580259677595752 21 -0.581817626953125 4 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 21.536976647645854 0.1742816388551942 1 {I|L}SP[HA]{I|L}{I|L}A 8 5 52.612 0 0 4.942 0 0 0 259.10861586641045 259.10861586641045 42.321844178516486 0 0 0 0 0.4247425010840047 1.3010299956639813 0.5 0 {I|L}SP[HA]{I|L}{I|L}A 4.942 - 269 + NaN NaN 146027.7 NaN 12505 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15773 67.912 NaN 336610 35 0 19602 0.261 -1 DLMGDVYFFD 10 73 619.2578453807354 1236.5011378282707 2 619.2576293945312 MULTI HCD FTMS 0 0 0 15768 108922.28125 0.40165272190005746 18 -0.49759674072265625 5 Oxidation (M) _DLM(Oxidation (M))GDVYFFD_ ENSG00000137628|ENST00000393743|DDX60 9.38312468134398 0.42334543440173333 1 QE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5 -1 49.464 0 0 4.0003 0 0 552.2315540998062 0 552.2315540998062 0 38.777587793350534 0 0 0 1.5 0 0 0 QE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.0003 - 186 NaN NaN 134701.5 NaN 12506 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15774 67.916 NaN 131460 35 0 16186 0.263 + 21308 PSFYAERFFKF 11 45 480.2443433264118 1437.7112005794354 3 480.2435607910156 MULTI HCD FTMS 0 0 0 15768 46522.17578125 0.46752640732209394 -2 0.05010223388671875 6 Unmodified _PSFYAERFFKF_ ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 10.52747425323666 0.3653561834368464 1 PS 2 9 41.454 0 0 2.8833 0 0 0 1250.6006957777495 1250.6006957777495 14.458865705675876 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + PS 2.8833 + + 27 + NaN NaN 94247 NaN 12507 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15775 67.919 NaN 79560 35 0 7281.2 0.261 + 7945 GEAAWNNMQVF 11 40 633.7842779258189 1265.5540029184376 2 633.7842407226562 MULTI HCD FTMS 0 0 0 15768 18519.5859375 0.21065235745551186 7 -0.18303680419921875 7 Unmodified _GEAAWNNMQVF_ ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000164574|Q86SR1-4|GALNT10 2.498486711656943 0.4079631525365919 1 HWY{M(Oxidation (M))|F} 4 9 27.423 0 0 2.1669 0 0 614.2775135724625 0 614.2775135724625 0 15.433050281841219 0 0 0 0 0 0 0 HWY{M(Oxidation (M))|F} 2.1669 - 13 NaN NaN 93484.7 NaN 12508 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15776 67.922 NaN 111090 35 0 13165 0.264 + 1771 CLPSPGEVGL 10 33 486.246975438636 970.479397944072 2 486.2475280761719 MULTI HCD FTMS 0 0 0 15768 23783.19140625 0.24262100631520256 -19 0.48023223876953125 8 Unmodified _CLPSPGEVGL_ REV__ENST00000570950.1_1_16:2906057-2907066:-|nuORF 10.073929032068715 0.4168838835836452 1 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.2944203107437 0 683.2944203107437 0 36.197887582883936 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 8 NaN NaN 106721.8 NaN 12509 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15777 67.926 NaN 105560 35 0 9233.1 0.262 + 816 AVKLYNSGDF 10 52 557.2821841152138 1112.5498152972275 2 557.2821655273438 MULTI HCD FTMS 0 0 0 15768 23677.263671875 0.09282525888371392 15 -0.414764404296875 9 Unmodified _AVKLYNSGDF_ ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion 6.2057823575117 0.44245551207394906 1 DY{I|L} 3 9 28.188 0 0 2.5336 0 0 703.3649159162125 0 703.3649159162125 0 7.2184874961635614 0 0 0 0.5 0 0 0 DY{I|L} 2.5336 - 27 NaN NaN 99671.9 NaN 12510 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15778 67.929 NaN 83666 35 0 5541.7 0.262 + 1751 CLFESFWCRY 10 44 451.86308729414225 1352.5674324826268 3 451.8634948730469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _CLFESFWCRY_ REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF 0.776531954647913 0.4711933975711956 1 A{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.2165 0 0 1116.4532337295002 0 1116.4532337295002 0 -4.515449934959719 -4.515449934959719 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.2165 - 4 + NaN NaN 91908.6 NaN 12511 3265 15768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15780 67.934 NaN 2593400 35 0 738630 0.326 + 10064 IFFENHPYF 9 101 607.287363119328 1212.560173305456 2 607.2876586914062 MULTI HCD FTMS 0 0 0 15779 1909079.5 0.8692875269606222 -1 0.03676605224609375 1 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 155.02607137521346 3.513045939247001E-06 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F} 9 0 + 93.497 0 0 7.7107 7.7107 93.485 0 0 0 56.60342221458804 9.889917747712644 9.889917747712644 16.197887582883936 0 2.9049471895720984 0 0.7614393726401688 0.6989700043360187 + + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGGHPY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}NHPY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}ENHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[DG]AHPY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}NHPY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E{I|L}NHPY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}{M(Oxidation (M))|F}NHPY{M(Oxidation (M))|F};YYP{I|L}NHPY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{[CA]|SS}NH{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.7107;6.3748;6.2748;5.7172;5.528;5.0566;5.0566;4.8083;4.7858;4.5011 +;-;-;-;-;-;-;-;-;- + 5531 + NaN NaN 485493.2 NaN 12512 3266 15779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15781 67.938 NaN 535850 35 0 29449 0.261 + 27187 SYNNFFRMF 9 89 621.2738121112648 1240.5330712893294 2 621.2742919921875 MULTI HCD FTMS 0 0 0 15779 258548.3125 0.05115242334579788 68 -1.8696517944335938 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 110.5527297667825 0.0028521687250969148 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.433 0 0 6.4838 6.4838 88.811 0 0 0 9.18100828086844 63.09131362978043 9.18100828086844 9.208187539523749 0 3 0 0.6109243748081782 1.5484550065040281 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG][SG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG][SG]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][MT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QN]|[E{I|L}]|[KN]}NN[MT];[{M(Oxidation (M))|F}V]HH{[QN]|[E{I|L}]|[KN]}NN[MT];{[{M(Oxidation (M))|F}C]|[YS]}NN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RP][MT] 6.4838;5.7415;5.7415;4.8531;4.3786;3.4902;2.661;1.3449;1.2271;1.2123 +;-;-;-;-;-;-;-;-;- + 1470 NaN NaN 162556.6 NaN 12513 3266 15779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15782 67.943 NaN 687110 35 0 97970 0.261 -1 MDQSHRKEM 9 60 589.2609515437487 NaN 0 589.2742919921875 PEAK HCD FTMS 0 0 0 15779 17462.072265625 1 0 0 3 Oxidation (M) _MDQSHRKEM(Oxidation (M))_ ENSG00000187954|ENST00000530374|ZFTRAF1;ENST00000528558.1_1_8:145677565-145687797:-|nuORF;nc|ENSG00000291317|P0DTL6-1|ZFTRAF1;nc|ENSG00000291317|P0DTL6-2|ZFTRAF1;nc|ENSG00000291317|P0DTL6-4|ZFTRAF1 15.847184025352803 0.21527282152051216 1 EYA{[VA]|[{I|L}G]}VS 7 -1 34.614 0 0 2.9421 0 0 165.05193556122612 289.0829993102948 454.1349348715209 0 0 0 0 0 0 0 1.916386562212267 0 EYA{[VA]|[{I|L}G]}VS 2.9421 - 439 + NaN NaN 183361.4 NaN 12514 3266 15779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15783 67.946 NaN 586940 35 0 49300 0.262 + 26683 SYANYFIRL 9 98 573.8012983781484 1145.5880438230968 2 573.8006591796875 MULTI HCD FTMS 0 0 0 15779 186666.8125 0.32686262576494823 -5 0.126434326171875 4 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 133.0521902211835 0.0004198702180815479 1 {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L} 9 0 + 90.729 0 0 7.9198 7.9198 93.98 0 0 0 12.618705200516018 46.42667503568731 12.618705200516018 17.073259432077563 0 3 0 0.785666875892183 1.9049471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}R{I|L}{I|L};[YQ][SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}R{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};[YQ][SG]Y{M(Oxidation (M))|F}R{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L} 7.9198;6.4295;5.8266;5.8239;4.7044;4.4946;4.3363;3.375;3.1744;2.3706 +;-;-;-;-;-;-;-;-;- + 1965 NaN NaN 182994.4 NaN 12515 3266 15779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15784 67.95 NaN 276810 35 0 19709 0.261 + 12537 KSGFFVDFFD 10 67 604.784759791264 1207.554966649328 2 604.7682495117188 MULTI HCD FTMS 0 0 0 15779 26974.685546875 0.3798681348882056 3 -0.0738067626953125 5 Unmodified _KSGFFVDFFD_ ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8 6.723162845929126 0.4397169348982109 1 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 6 34.333 0 0 2.8432 0 0 165.11506856402394 0 165.11506856402394 0 9.851905544230355 0 0 0 0 0 0.75 0 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.8432 - 297 + NaN NaN 123622.2 NaN 12516 3266 15779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15785 67.953 NaN 167160 35 0 19934 0.261 + 17760 MEEKNLSSAGP 11 51 581.7739321607121 1161.533311388224 2 581.7745971679688 MULTI HCD FTMS 0 0 0 15779 72118.875 0.06187113560763205 25 -0.6975479125976562 6 Unmodified _MEEKNLSSAGP_ REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF 2.0860074813731053 0.4097721463192591 1 ME 2 -1 12.307 0 0 1.0596 0 0 0 898.4292696588499 898.4292696588499 5.317431287605531 0 0 0 0 0 0 0 0 ME 1.0596 + + 14 + NaN NaN 104223.3 NaN 12517 3266 15779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15787 67.958 NaN 2146600 35 0 267320 0.326 + 7677 FYLEGGFSKF 10 94 597.7950511296735 1193.575549326147 2 597.795166015625 MULTI HCD FTMS 0 0 0 15786 1470104.125 0.35371368856825397 4 -0.1058349609375 1 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 139.78183599554657 4.535006195463608E-07 1 [Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 4 + 90.473 0 0 7.58 7.58 86.483 0 0 0 1.478174818886373 13.252050213831282 1.478174818886373 1.249387366082999 0 2.1549471895720984 1.0457574905606752 1.6861818737241734 0 [Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 7.58;7.4753;7.4561;7.434;7.3515;6.6625;6.3616;6.2569;6.1994;6.0947 -;-;-;-;+;+;-;-;-;- + 7317 NaN NaN 408610.1 NaN 12518 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15788 67.962 NaN 1103800 35 0 133840 0.261 + 13230 KYMDIEFDF 9 86 612.2680883328802 1222.5216237325603 2 612.2681274414062 MULTI HCD FTMS 0 0 0 15786 766169.125 0.29383816255155537 18 -0.5037155151367188 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 93.16586880292088 0.00444300900000894 1 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F} 9 5 + 75.741 0 0 6.1955 6.1955 83.966 0 0 0 4.691512336730028 39.68047529268126 4.691512336730028 1.2628749457997657 0 1.8807196863200843 1.3979400086720375 1.1861818737241734 0 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;[{M(Oxidation (M))|F}E]D{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EEV[Y{M(Oxidation (M))|F}]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}EV[Y{M(Oxidation (M))|F}]K 6.1955;6.0922;3.6346;2.5328;2.1336;1.8473;1.8124;1.7743;1.2725;1.2375 -;-;-;-;-;-;-;-;-;- 1360 NaN NaN 255199 NaN 12519 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15789 67.967 NaN 1116300 35 0 69289 0.262 + 891 AYALLLQHL 9 81 521.308155216206 1040.601757499212 2 521.3082275390625 MULTI HCD FTMS 0 0 0 15786 395892.375 1 0 0 3 Unmodified _AYALLLQHL_ ENSG00000225697|ENST00000395550|SLC26A6;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6 101.72198241140316 0.004218805956062179 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}{I|L}QH{I|L} 9 0 + 82.049 0 0 7.8848 7.8848 89.394 0 0 0 2.946537861557985 2.946537861557985 2.946537861557985 6.7609125905568135 0 2.4247425010840047 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}{I|L}QH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}{I|L}QH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}{I|L}[AG]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}{I|L}[AG]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}[HQ]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}[HQ]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PV[KT]H{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}G[KT]H{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AV[KT]H{I|L} 7.8848;7.2351;6.9999;6.3502;5.4192;4.7695;3.7036;0.59733;0.38413 +;-;-;-;-;-;-;-;- + 578 NaN NaN 252671.2 NaN 12520 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15790 67.97 NaN 839950 35 0 282000 0.261 + 1319 AYPAIRYLL 9 68 540.3161748849977 1078.6177968367954 2 540.3163452148438 MULTI HCD FTMS 0 0 0 15786 328974.15625 1 0 0 4 Unmodified _AYPAIRYLL_ ENSG00000132676|ENST00000368336|DAP3;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3 74.42276476219924 0.007657080072768255 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L} 9 0 + 73.061 0 0 6.7736 6.7736 87.335 0 0 0 7.320618910682484 7.320618910682484 7.320618910682484 6.262874945799766 0 2.4802046884880937 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}R{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VG]Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VG]{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VP][HV]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA[VP][HV]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VP]{I|L}[HV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA[VP]{I|L}[HV]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA[VP]{I|L}{I|L}[HV];[RP][YV][VG]Y{I|L}{I|L} 6.7736;6.193;5.9199;5.3393;4.1125;3.8771;3.5544;3.3699;2.8117;0.80949 +;-;-;-;-;-;-;-;-;- + 312 NaN NaN 206686.2 NaN 12521 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15791 67.973 NaN 470050 35 0 70349 0.261 + 33363 YGHLELIQL 9 78 543.3031228870129 1084.5916928408258 2 543.3031005859375 MULTI HCD FTMS 0 0 0 15786 237417.890625 0.14259713885746497 13 -0.35404205322265625 5 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 36.12702656103203 0.08312389501731911 1 E{I|L}{I|L}Q{I|L} 5 4 52.206 0 0 4.8134 0 0 470.2284413068375 0 470.2284413068375 0 46.721675119240516 0 0 0 1.4247425010840047 0 0 0.3494850021680094 + E{I|L}{I|L}Q{I|L} 4.8134 + + 205 NaN NaN 160355.2 NaN 12522 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15792 67.977 NaN 340210 35 0 49672 0.261 -1 MLISLCMCL 9 72 550.2556557650513 1098.4967585969025 2 550.7574462890625 MULTI HCD FTMS 0 0 0 15786 90706.9453125 0.47761094504899976 5 -0.122314453125 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LISLC(Carbamidomethyl (C))MCL_ ENST00000375592.7_1_1:16621313-16632330:-|nuORF 7.910154910731844 0.2910521888787154 1 {I|L}{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7719 0 0 820.3337774951432 0 820.3337774951432 0 4.771212547196626 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7719 - 136 + NaN NaN 148317.5 NaN 12523 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15793 67.98 NaN 502920 35 0 208780 0.261 + 10230 IHSGLEVLL 9 43 490.7923563270418 979.5701597208836 2 490.79217529296875 MULTI HCD FTMS 0 0 0 15786 146496.78125 0.2899329218520837 -4 0.1108245849609375 7 Unmodified _IHSGLEVLL_ ENST00000585058.1_1_17:29850640-29851216:+|nuORF 15.847184025352803 0.2234401846867398 1 V{I|L}{I|L} 3 6 36.198 0 0 3.6953 0 0 636.3232781499364 0 636.3232781499364 0 30.713337517843655 0 0 0 1 0 0 0 + V{I|L}{I|L} 3.6953 + + 11 NaN NaN 163882.9 NaN 12524 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15794 67.983 NaN 180410 35 0 21213 0.261 + 11395 IYPHGLVLL 9 60 512.813002013963 1023.611451094726 2 512.8131713867188 MULTI HCD FTMS 0 0 0 15786 111901.765625 0.36413032259415984 12 -0.3243255615234375 8 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 45.7499826716795 0.03894913563566938 1 {I|L}Y 2 7 38.756 0 0 3.7862 0 0 0 744.4412926385447 744.4412926385447 15.454940995189972 0 0 0 0 0.3807196863200844 2 0 0 + {I|L}Y 3.7862 + + 44 + NaN NaN 117617.9 NaN 12525 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15795 67.987 NaN 389890 35 0 38548 0.261 + 22260 QPDDLINQL 9 63 528.2719927026187 1054.5294324720373 2 528.2723388671875 MULTI HCD FTMS 0 0 0 15786 144426.25 0.8103661300889745 -2 0.06072235107421875 9 Unmodified _QPDDLINQL_ ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF 71.92227651296345 0.008466197542043549 1 [Q{I|L}]D[DP]{I|L}NQ{I|L} 9 2 + 68.91 0 0 6.5346 6.5346 88.899 0 0 0 11.615407947783936 63.196283053937904 11.615407947783936 9.208187539523749 0 1.2614393726401687 0 0.9802046884880937 1.0629529932484498 [Q{I|L}]D[DP]{I|L}NQ{I|L};[Q{I|L}]D[DP]{I|L}GGQ{I|L};[Q{I|L}]D[DP]{I|L}N[AG]{I|L};[Q{I|L}]D{I|L}[DP]NQ{I|L};[Q{I|L}]D{I|L}[DP]GGQ{I|L};[Q{I|L}]D{I|L}[DP]N[AG]{I|L} 6.5346;5.6614;5.6614;5.0408;4.1676;4.1676 -;-;-;-;-;- 148 NaN NaN 140693.1 NaN 12526 3267 15786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15797 67.991 NaN 7514900 35 0 2480500 0.326 + 24605 RYLPTGSFPF 10 79 592.8085720950354 1183.6025912568707 2 592.80908203125 MULTI HCD FTMS 0 0 0 15796 5016077 0.8946428020438778 -1 0.0334625244140625 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 114.18643581695662 4.601856720657053E-05 1 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 115.85 0 0 9.788 9.788 97.817 0 0 0 18.77513725768253 99.73705952196511 18.77513725768253 34.17735320183944 0 3.1549471895720984 1.3010299956639813 1.4916440611282626 0 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};[YR][TA][VP]S{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR][TA]YP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 9.788;6.9005;6.5824;5.7144;5.4687;4.1534;1.892 +;-;-;-;-;-;- + 349 NaN NaN 919320.6 NaN 12527 3268 15796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15798 67.996 NaN 305540 35 0 74637 0.261 + 10783 ISPGRYFLL 9 55 533.308312078647 1064.6020712240938 2 533.3086547851562 MULTI HCD FTMS 0 0 0 15796 75904.796875 0.059991858832823076 24 -0.6630859375 2 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 12.240655878213236 0.2545997876781172 1 [Y{I|L}]G{I|L}{I|L}KN 7 7 44.201 0 0 4.1518 0 0 0 260.1035224716322 260.1035224716322 21.98206988169865 0 0 0 0 0 2 0 0 [Y{I|L}]G{I|L}{I|L}KN 4.1518 - 174 NaN NaN 128762.1 NaN 12528 3268 15796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15799 68 NaN 123130 35 0 24250 0.261 + 9594 HSFRTTPF 8 45 496.7504418952653 991.4863308573306 2 496.75048828125 MULTI HCD FTMS 0 0 0 15796 31638.533203125 0.5971294091522547 -2 0.0574188232421875 3 Unmodified _HSFRTTPF_ REV__ENSG00000166428|ENST00000392593|PLD4 8.593279151180031 0.5292430274356741 1 {M(Oxidation (M))|F}H{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F} 6 -1 27.708 0 0 2.7946 0 0 229.13240126924308 0 229.13240126924308 0 1.7390218772080601 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}H{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F} 2.7946 - 28 + NaN NaN 103249.9 NaN 12529 3268 15796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15800 68.003 NaN 431750 35 0 101320 0.261 + 29292 TYLSIIHSL 9 75 523.7972999534439 1045.5800469736878 2 523.7971801757812 MULTI HCD FTMS 0 0 0 15796 69862.453125 1 0 0 4 Unmodified _TYLSIIHSL_ ENSG00000133030|ENST00000651222|MPRIP 47.748688679222035 0.03472022231463587 1 [YT]{I|L}S{I|L}{I|L}H{[TV]|[{I|L}S]} 9 0 + 51.806 0 0 4.9547 4.9547 83.611 0 0 0 -2.808487663269972 4.577118610328341 -2.808487663269972 4.973024840566467 0 1.5484550065040281 2 0 0 + + [YT]{I|L}S{I|L}{I|L}H{[TV]|[{I|L}S]};[KT]VQEVTKN;[KT]V[AG]EVTKN;[KT]VQQV[KT]D;[KT]V{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}TKN;[KT]VQE{[QN]|[E{I|L}]|[KN]}{[TV]|[{I|L}S]};[KT]V[AG]QV[KT]D;[KT]VQ[AG]V[KT]D;[KT]VQQV[SG]{[TV]|[{I|L}S]};[KT][TP]{[SA]|[TG]}VTKN 4.9547;4.4791;3.5984;2.3052;2.2295;1.7074;1.4245;1.4245;1.3757;1.2848 +;-;-;-;-;-;-;-;-;- + 241 + NaN NaN 147250.8 NaN 12530 3268 15796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15802 68.008 NaN 3438900 35 0 502290 0.327 + 1153 AYLESFYKF 9 107 584.289645907993 1166.5647388827858 2 584.2901000976562 MULTI HCD FTMS 0 0 0 15801 2748130 0.14905097312989743 11 -0.30419158935546875 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 129.88 0 0 11.134 11.134 95.561 0 0 0 67.96363642288374 14.973024840566453 14.973024840566453 11.141055156958302 0 3.2302046884880937 2 0.7302046884880937 0.5941876774005248 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYS{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 11.134;10.179;9.3432;9.1469;9.0829;9.0101;8.972;8.8511;8.5229;8.3116 +;+;-;-;-;-;-;-;-;- + 10029 + NaN NaN 467545.5 NaN 12531 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15803 68.012 NaN 560160 35 0 48429 0.261 + 18728 MYTKLFVGF 9 90 561.2887753749021 1120.5629978166041 2 561.2893676757812 MULTI HCD FTMS 0 0 0 15801 188990.4375 0.23706730088514308 15 -0.4170989990234375 2 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 92.65332237495696 0.004456439685314431 1 {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 79.408 0 0 7.0864 7.0864 92.245 0 0 0 65.94766171259536 16.478174818886373 16.478174818886373 15.172203223519531 0 2.6549471895720984 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 7.0864;5.7324 +;+ + 658 + NaN NaN 169917.8 NaN 12532 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15804 68.016 NaN 824470 35 0 224860 0.261 + 2630 DVASVIVTKL 10 75 522.8184999735133 1043.6224470138266 2 522.818603515625 MULTI HCD FTMS 0 0 0 15801 303646.375 0.3650832726532201 -4 0.11057281494140625 3 Unmodified _DVASVIVTKL_ ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54 84.5221896805406 0.0014228510802933125 1 [DV]ASV{I|L}VTK{I|L} 10 0 + 90.305 0 0 8.6531 8.6531 96.243 0 0 0 20.993624753846106 64.17366128710782 20.993624753846106 27.946537861557992 0 1.7510912013506124 1.5228787452803376 1.7491348669726232 0 + + [DV]ASV{I|L}VTK{I|L};[VS]{[DA]|[EG]}V{I|L}VTK{I|L};[DV][{I|L}A][VS]VTK{I|L};[DV][{I|L}A]{I|L}[TA]TK{I|L};[KT]V{I|L}[VS]A[DV]{I|L} 8.6531;5.9752;3.3502;2.9327;2.8683 +;-;-;-;- + 322 NaN NaN 199308.4 NaN 12533 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15805 68.019 NaN 598500 35 0 82939 0.261 + 3314 EEIDLRSVGW 10 89 602.3041934000676 1202.593833866935 2 602.8236083984375 MULTI HCD FTMS 0 0 0 15801 27933.310546875 0.24813830191453948 6 -0.1684112548828125 4 Unmodified _EEIDLRSVGW_ ENSG00000110057|ENST00000227471|UNC93B1 38.61474834105838 0.1574278268413918 1 Q{M(Oxidation (M))|F}{I|L}S[VS]GW 8 5 32.446 0 0 2.698 0 0 280.14223246632685 0 280.14223246632685 0 -1.8875686288412652 -1.8875686288412652 0 0 0.6747425010840047 0 1.2614393726401687 0 Q{M(Oxidation (M))|F}{I|L}S[VS]GW 2.698 - 3155 NaN NaN 193177.1 NaN 12534 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15806 68.023 NaN 138170 35 0 8937.6 0.261 + 31647 VYITGKEVFSF 11 52 645.3425179265266 1288.6704829198532 2 645.3426513671875 MULTI HCD FTMS 0 0 0 15801 56182.23828125 0.4545296905779976 6 -0.1684112548828125 5 Unmodified _VYITGKEVFSF_ ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant 42.835182525472874 0.11869059338859039 1 [YV]{I|L}T[WK]V{M(Oxidation (M))|F}S 9 3 56.405 0 0 4.377 0 0 0 162.04875375409065 162.04875375409065 49.41508427897837 0 0 0 0 2.2302046884880937 1.6989700043360187 0 0 [YV]{I|L}T[WK]V{M(Oxidation (M))|F}S 4.377 - 185 NaN NaN 116407.7 NaN 12535 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15807 68.026 NaN 266000 35 0 15223 0.262 + 6320 FPFSRPELL 9 72 553.305565233394 1104.5965775335878 2 553.8268432617188 MULTI HCD FTMS 0 0 0 15801 33953.88671875 0.7839793110589112 1 -0.02965545654296875 6 Unmodified _FPFSRPELL_ ENSG00000041988|ENST00000054650|THAP3;nc|ENSG00000041988|Q8WTV1-3|THAP3;nc|ENSG00000041988|Q8WTV1-4|THAP3 26.268140514670165 0.13340543277302316 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}V[RP]E[{I|L}T] 9 2 + 38.623 0 0 3.4966 3.4966 80.586 0 0 0 12.995587109089051 2.705671471620626 2.705671471620626 2.7165251409206093 0 0.8252574989159953 0 0.7059771852360797 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}V[RP]E[{I|L}T];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YAR{I|L}{I|L}PE;{M(Oxidation (M))|F}P{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}Q{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}AG{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[QT][KP]{I|L}Q{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[QT][{I|L}P]KQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[QT][KP]{I|L}AG{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[QT][{I|L}P]KAG{M(Oxidation (M))|F};[KC]E{I|L}[KP]{I|L}Q{M(Oxidation (M))|F};[KC]E{I|L}[{I|L}P]KQ{M(Oxidation (M))|F} 3.4966;3.2507;1.6679;1.354;1.2759;1.2344;0.96191;0.92049;0.52875;0.48732 -;-;-;-;-;-;-;-;-;- 655 + NaN NaN 129322.6 NaN 12536 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15808 68.029 NaN 365140 35 0 58168 0.261 + 19696 NYAAALETF 9 59 500.24241302616554 998.4702731191311 2 500.2426452636719 MULTI HCD FTMS 0 0 0 15801 102718.1953125 0.5195291131493734 -3 0.0738067626953125 7 Unmodified _NYAAALETF_ ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF;nc|ENSG00000165416|Q9Y2Z0|SUGT1 103.35351024395868 0.004027461563756449 1 [YN]AAA{I|L}ET{M(Oxidation (M))|F} 9 0 + 89.368 0 0 8.9505 8.9505 95.146 0 0 0 76.18083311897819 16.478174818886373 16.478174818886373 14.827796776480469 0 2.385151878060192 2 1.1694451763165201 0 + + [YN]AAA{I|L}ET{M(Oxidation (M))|F};[YN]AADVVT{M(Oxidation (M))|F};[YN]{[NV]|[RG]}{I|L}ET{M(Oxidation (M))|F};[YN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NAA{I|L}ET{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][NG]A{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGAA{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{[{M(Oxidation (M))|F}H]|[RQ]}Y[KG] 8.9505;7.4655;7.4517;5.9666;4.7491;3.248;3.0642;0.44489 +;-;-;-;-;-;-;- + 391 + NaN NaN 134289.4 NaN 12537 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15809 68.033 NaN 52416 35 0 5510 0.261 + 26763 SYFYLRHWH 9 38 436.8792992331647 NaN 0 436.5498352050781 PEAK HCD FTMS 0 0 0 15801 24192.109375 1 0 0 8 Unmodified _SYFYLRHWH_ ENSG00000165152|ENST00000374848|PGAP4 1.0714618166137932 0.2900546878344058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94643.3 NaN 12538 3269 15801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15811 68.037 NaN 1179900 35 0 75684 0.326 + 6337 FPFYYEIKM 9 92 627.2987212994602 1252.5828896657204 2 627.299072265625 MULTI HCD FTMS 0 0 0 15810 611434.375 0.7274091750685718 7 -0.18837738037109375 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 86.33184430468982 0.004622086694044132 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 73.017 0 0 5.8293 5.8293 83.895 0 0 0 2.372366890523324 6.959113902317654 2.372366890523324 2.372366890523324 0 2.6435078169319297 1.6989700043360187 0.9291746928241125 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYE{M(Oxidation (M))|F}{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYE{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[NP]YVE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[NP]VYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}[MN]E{I|L}K{M(Oxidation (M))|F} 5.8293;5.6399;5.3919;5.2737;5.0325;4.6627;4.2137;4.0077;4.0077;3.7276 +;+;-;-;-;-;-;-;-;- + 4258 NaN NaN 266194.2 NaN 12539 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15812 68.042 NaN 2188500 35 0 398200 0.262 + 1237 AYLPVNESF 9 98 520.2583269513063 1038.5021009694126 2 520.2584228515625 MULTI HCD FTMS 0 0 0 15810 567439.4375 0.3223644004113638 -3 0.07950592041015625 2 Unmodified _AYLPVNESF_ ENSG00000167658|ENST00000309311|EEF2 147.05914393524117 1.1935124485855994E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F} 9 0 + 105.19 0 0 10.129 10.129 94.965 0 0 0 16.280673999630864 74.38547520912806 16.280673999630864 10.268024924119672 0 2.9049471895720984 1.6989700043360187 0.3494850021680094 0.7059771852360797 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVENS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVEGGS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[DN]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVN{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NVP{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EN[VP]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[DN]TV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGG{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]} 10.129;9.14;8.5623;7.5735;7.5052;6.53;6.482;6.062;5.96;5.6433 +;-;-;-;-;-;-;-;-;- + 1111 NaN NaN 433473.8 NaN 12540 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15813 68.046 NaN 348140 35 0 24635 0.261 + 32195 VYTEYYQSF 9 84 600.2657877825841 1198.517022631968 2 600.2650756835938 MULTI HCD FTMS 0 0 0 15810 104204.0703125 1 0 0 3 Unmodified _VYTEYYQSF_ REV__ENSG00000071991|ENST00000262150|CDH19;REV__nc|ENSG00000071991|Q9H159-2|CDH19 19.256988751693697 0.19398022840297344 1 VYS{NN|[MP]|[D{I|L}]|[EV]}AAY 8 -1 54.805 0 0 4.5727 0 0 0 313.0804842584594 313.0804842584594 25.931087926598266 0 0 0 0 1.0114393726401687 1.6989700043360187 0.2742275032520141 0 VYS{NN|[MP]|[D{I|L}]|[EV]}AAY 4.5727 - 408 + NaN NaN 139100.6 NaN 12541 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15814 68.049 NaN 285440 35 0 34069 0.261 + 5177 FFDAELSQM 9 55 552.2390895993532 1102.4636262655063 2 552.239990234375 MULTI HCD FTMS 0 0 0 15810 87758.296875 0.025526669575413816 110 -3.0188980102539062 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 60.07390631473393 0.0174780869009295 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA + + 58.315 13.188 2.7463 5.2896 5.2896 62.081 0 0 0 0 43.20947833959288 0 0 0 1.9247425010840047 0 0 0.3494850021680094 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 5.2896 + + 218 + NaN NaN 122557.1 NaN 12542 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15815 68.052 NaN 248440 35 0 50590 0.261 + 3846 EPIPYEFMA 9 63 556.7519991332617 1111.4894453333234 2 556.7529296875 MULTI HCD FTMS 0 0 0 15810 58870.4609375 0.34451292969483294 -3 0.07950592041015625 5 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 54.773552608820026 0.024892918755467567 1 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4 5 50.79 0 0 4.5695 0 0 599.2928333966812 0 599.2928333966812 0 32.830918867322296 0 0 0 1.3807196863200843 0 0.805462187404089 0 + E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4.5695 + + 98 NaN NaN 113487.4 NaN 12543 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15816 68.056 NaN 115700 35 0 9574.6 0.261 -1 MPDVDFNL 8 43 483.71553412020637 965.4165153072128 2 483.7157287597656 MULTI HCD FTMS 0 0 0 15810 42350.91015625 0.6431555731991366 -10 0.25301361083984375 6 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 4.3292370932331545 0.5355693454741696 1 {M(Oxidation (M))|F}N{I|L} 3 -1 24.693 0 0 2.5577 0 0 573.2104393089387 0 573.2104393089387 0 17.703037561203843 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N{I|L} 2.5577 + + 8 NaN NaN 98831.4 NaN 12544 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15817 68.059 NaN 71976 35 0 7808.4 0.261 + 12016 KHAQFKLELF 10 36 630.859375 NaN 0 630.859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KHAQFKLELF_ ENST00000439964.1_1_2:64871847-64873778:+|nuORF 1.6526216038709556 0.33876987398426067 1 H 1 9 6.9897 0 0 0.55487 0 0 132.1721856731338 987.4554844515498 1119.6276701246836 0 0 0 0 0 0 0 0 0 + H 0.55487 + + 4 + NaN NaN 102064.9 NaN 12545 3270 15810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15819 68.064 NaN 213300 35 0 30526 0.327 + 1955 DAINDANLL 9 53 479.74558345433394 NaN 0 479.7457275390625 PEAK HCD FTMS 0 0 0 15818 98400.40625 0.49404730991816903 -2 0.0559844970703125 1 Unmodified _DAINDANLL_ ENSG00000160752|ENST00000368356|FDPS;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 76.82478488871298 0.004028098895544731 1 {I|L}NADN{I|L} 6 5 50.52 0 0 5.2764 0 0 131.09552569194733 183.0409334772094 314.13645916915675 0 0 0 0 0 2.079689690656103 0 0.3807196863200844 0.75 {I|L}NADN{I|L} 5.2764 - 92 + NaN NaN 118260.5 NaN 12546 3271 15818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15820 68.068 NaN 193400 35 0 14754 0.261 + 4957 FASSFKIVL 9 60 506.2975799322659 1010.5806069313318 2 506.2973327636719 MULTI HCD FTMS 0 0 0 15818 60340.37109375 0.1857995109090435 8 -0.2184906005859375 2 Unmodified _FASSFKIVL_ ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 34.40172386719151 0.0910440009062557 1 SS{I|L} 3 6 40.119 0 0 3.9699 0 0 705.4467030255875 0 705.4467030255875 0 25.515384402724592 0 0 0 0.8252574989159953 0 0.805462187404089 0 SS{I|L} 3.9699 - 100 NaN NaN 107086.4 NaN 12547 3271 15818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15821 68.072 NaN 101570 35 0 4916.7 0.261 + -1 VYPFWCTFF 9 41 633.7842779258189 1265.5540029184376 2 634.2891235351562 MULTI HCD FTMS 0 0 0 15818 26617.345703125 0.5781628412182007 13 -0.361114501953125 3 Carbamidomethyl (C) _VYPFWC(Carbamidomethyl (C))TFF_ REV__ENST00000263228.3_1_9:33920018-33920222:+|nuORF 2.0597508629832335 0.3354026079994024 1 W 1 -1 3.9794 0 0 0.31444 0 0 342.11875732989796 734.3303927057249 1076.4491500356228 0 0 0 0 0 0 0 0 0 W 0.31444 + + 1 + NaN NaN 111030.1 NaN 12548 3271 15818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15822 68.075 NaN 119520 35 0 16883 0.264 -1 MPDLPNVGL 9 45 486.246975438636 970.479397944072 2 486.2470397949219 MULTI HCD FTMS 0 0 0 15818 59573.09765625 0.6077268881111942 -13 0.3255462646484375 4 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.042465956692817 0.2476723265019929 1 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.29465280516 0 683.29465280516 0 32.70303756120384 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 12 NaN NaN 99898.2 NaN 12549 3271 15818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15824 68.08 NaN 1649600 35 0 442590 0.327 + 4401 EYDNFFQHL 9 108 606.7699751250075 1211.5253973168149 2 607.28759765625 MULTI HCD FTMS 0 0 0 15823 57638.58203125 0.7074860875955974 3 -0.095947265625 1 Unmodified _EYDNFFQHL_ ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 46.020951573049366 0.037705236580089195 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 8 8 45.288 0 0 3.7381 0 0 112.04870048728033 0 112.04870048728033 0 2.718079538519028 0 0 0 0.3054621874040891 0 0.6382104921644451 0.4247425010840047 {M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 3.7381 - 6399 + NaN NaN 331069.1 NaN 12550 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15825 68.085 NaN 1538700 35 0 219370 0.261 + 32106 VYSEVAAYEF 10 82 589.2744667578457 1176.5343805824914 2 589.274658203125 MULTI HCD FTMS 0 0 0 15823 748081.875 0.845865753578388 1 -0.0331573486328125 2 Unmodified _VYSEVAAYEF_ ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF 152.41221235671458 1.4491950712217411E-07 1 [YE]SVAVAYE{M(Oxidation (M))|F} 10 3 + 102.55 0 0 8.7159 8.7159 90.471 0 0 0 6.077184142563468 16.53212513775344 6.077184142563468 6.077184142563468 0 2.305462187404089 1.3010299956639813 2.2658715643802765 0 [YE]SVAVAYE{M(Oxidation (M))|F};[YV]SEAVAYE{M(Oxidation (M))|F};[YE]AA[{I|L}T]AYE{M(Oxidation (M))|F};[YT]DVAVAYE{M(Oxidation (M))|F};[YE]A[VS]VAYE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]SA[{I|L}T]AYE{M(Oxidation (M))|F};[YE]SV[Q{I|L}]YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]S[VS]VAYE{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}T]AVAYE{M(Oxidation (M))|F};[YV]SE[Q{I|L}]YE{M(Oxidation (M))|F} 8.7159;8.1994;7.5273;7.2719;7.1218;6.9228;6.8854;6.5172;6.4182;6.3688 -;-;-;-;-;-;-;-;-;- 3528 NaN NaN 312706.9 NaN 12551 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15826 68.089 NaN 1134200 35 0 106550 0.261 + 26684 SYANYFIRL 9 105 573.8012983781484 1145.5880438230968 2 573.8012084960938 MULTI HCD FTMS 0 0 0 15823 545631.75 0.955427609852843 1 -0.0331573486328125 3 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 157.7952019732125 5.857147217999733E-07 1 {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L} 9 0 + 96.529 0 0 8.4262 8.4262 94.675 0 0 0 13.686785716942168 60.94643644476136 13.686785716942168 16.281446971601312 0 3 0 1.2447026752325154 1.9802046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}{I|L}R{I|L};[YQ][SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}R{I|L}{I|L};[YQ][SG]Y{M(Oxidation (M))|F}R{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};[{M(Oxidation (M))|F}E]N[HA]{M(Oxidation (M))|F}{I|L}[VG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[HA]{M(Oxidation (M))|F}{I|L}[VG]{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}R{I|L}{I|L} 8.4262;7.0049;6.2646;5.9963;5.2141;4.5751;4.5295;3.9222;3.7684;3.479 +;-;-;-;-;-;-;-;-;- + 2864 NaN NaN 258580 NaN 12552 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15827 68.092 NaN 500510 35 0 32618 0.261 + 27188 SYNNFFRMF 9 81 621.2738121112648 1240.5330712893294 2 621.2738037109375 MULTI HCD FTMS 0 0 0 15823 185848.171875 0.03676908301535562 74 -2.05047607421875 4 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 110.5527297667825 0.0028521687250969148 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 82.239 0 0 6.6293 6.6293 89.102 0 0 0 10.691446804494902 68.96767826554118 10.691446804494902 9.208187539523749 0 3 0 0.6109243748081782 1.610924374808178 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RP][MT] 6.6293;5.887;5.887;4.499;1.2915 +;-;-;-;- + 546 NaN NaN 166387.1 NaN 12553 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15828 68.095 NaN 610240 35 0 29284 0.261 + 2904 DYSPYFKTI 9 102 567.2791460627044 1132.5437391922087 2 567.2789916992188 MULTI HCD FTMS 0 0 0 15823 174194.0625 0.007064935888996746 188 -5.245628356933594 5 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 59.368380827593164 0.01846506874148156 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 33.729 0 0 2.9781 0 0 0 764.3985114912899 764.3985114912899 1.5881579625798636 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3054621874040891 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 2.9781 + + 1651 NaN NaN 185867.4 NaN 12554 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15829 68.099 NaN 389710 35 0 75296 0.261 + 7240 FSTWHRDL 8 62 531.2615141841188 NaN 0 531.2493896484375 PEAK HCD FTMS 0 0 0 15823 31729.142578125 0.6424814075605576 4 -0.118988037109375 6 Unmodified _FSTWHRDL_ REV__ENSG00000143434|ENST00000368914|SEMA6C;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000143434|Q9H3T2-3|SEMA6C 10.823927491677226 0.38822285293237185 1 DAE 3 -1 15.732 0 0 1.4834 0 0 131.09566473546892 611.2831514947874 742.3788162302562 0 0 0 0 0 0.7059771852360797 0 0 0 DAE 1.4834 - 40 + NaN NaN 139766.5 NaN 12555 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15830 68.102 NaN 170600 35 0 9620.3 0.261 -1 YALPRKCN 8 69 511.2660298830739 NaN 0 511.3181457519531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YALPRKC(Carbamidomethyl (C))N_ ENSG00000100297|ENST00000216122|MCM5 11.114462752807354 0.38822285293237185 1 A 1 -1 5.4846 0 0 0.53743 0 0 672.3741485339228 274.08274255924067 946.4568910931634 0 0 0 0 0 0 0 0 0 A 0.53743 + + 74 + NaN NaN 108430 NaN 12556 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15831 68.105 NaN 221320 35 0 57633 0.261 + -1 KECENCKFIN 10 50 642.7889287689069 1283.5633046046137 2 642.7896118164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _KEC(Carbamidomethyl (C))ENCKFIN_ REV__ENSG00000204524|ENST00000414468|ZNF805;REV__nc|ENSG00000204524|Q5CZA5-2|ZNF805 7.608950283845883 0.4350283211712914 1 {I|L}WD{I|L}N 5 -1 38.223 0 0 2.9779 0 0 624.2543812482437 0 624.2543812482437 0 38.22301001672965 0 0 0 0.75 0 0 0 {I|L}WD{I|L}N 2.9779 - 31 NaN NaN 130646 NaN 12557 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15832 68.108 NaN 151130 35 0 21375 0.264 + 21098 PNIHFIKQANW 11 51 456.5785781796567 1366.71390513917 3 456.5785217285156 MULTI HCD FTMS 0 0 0 15823 33027.39453125 0.8048538466671534 -6 0.146270751953125 9 Unmodified _PNIHFIKQANW_ REV__ENSG00000181222|ENST00000674977|POLR2A;REV__nc|ENSG00000181222|P24928|POLR2A 2.4347853303010236 0.4082425251555256 1 W 1 -1 21.99 0 0 1.6089 0 0 1162.624242518856 0 1162.624242518856 0 8.076512587389642 0 0 0 0.5 0 0 0 W 1.6089 + + 51 + NaN NaN 123604.2 NaN 12558 3272 15823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15834 68.113 NaN 1082700 35 0 124620 0.327 + 7678 FYLEGGFSKF 10 94 597.7950511296735 1193.575549326147 2 597.7951049804688 MULTI HCD FTMS 0 0 0 15833 684767.75 0.16475821171176155 10 -0.281402587890625 1 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 128.57297698046145 2.2510087319712773E-05 1 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 85.755 0 0 7.1847 7.1847 85.515 0 0 0 11.144141363238631 0.5813929342526478 0.5813929342526478 0.5813929342526478 0 3.004432191740108 0 1.5021934810768762 0.28872548999643577 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[DG]SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 7.1847;7.136;6.8455;6.4133;6.2613;5.9708;5.28;5.2465;4.956;4.9382 -;-;+;+;-;-;-;-;-;- + 4599 + NaN NaN 253647.1 NaN 12559 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15835 68.118 NaN 1495700 35 0 217000 0.261 + 12912 KYGIVQEFF 9 105 565.7975877124654 1129.5806224917308 2 565.7979125976562 MULTI HCD FTMS 0 0 0 15833 903296.1875 0.8197908562485267 -3 0.07596588134765625 2 Unmodified _KYGIVQEFF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 129.77232118876745 0.0006187813247758304 1 [{M(Oxidation (M))|F}V]SKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 75.007 0 0 6.6402 6.6402 84.837 0 0 0 1.2763625255165323 7.683240267568294 1.2763625255165323 1.2763625255165323 0 2.1989700043360187 0 0.6382104921644451 0.9802046884880937 [{M(Oxidation (M))|F}V]SKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}GVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}VQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SKV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VS]VQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SVKQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}GV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}V[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PS]QV[PA]K{M(Oxidation (M))|F};[YK]GV{I|L}QE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6402;6.5272;6.468;5.825;5.8063;5.7752;5.712;5.6528;5.5511;5.0699 -;-;+;-;-;-;-;-;-;- + 5487 NaN NaN 316544.8 NaN 12560 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15836 68.122 NaN 760090 35 0 88999 0.261 + 13231 KYMDIEFDF 9 72 612.2680883328802 1222.5216237325603 2 612.2681884765625 MULTI HCD FTMS 0 0 0 15833 470280.6875 0.18036019540526668 24 -0.6816635131835938 3 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 90.13494162714682 0.004522430935000059 1 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 77.846 0 0 6.3677 6.3677 83.994 0 0 0 0.6888128940781257 9.451687839877891 0.6888128940781257 0.6888128940781257 0 2.6989700043360187 0 1.0044321917401078 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}MAAD{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYTE{I|L}M{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K 6.3677;6.3113;6.2739;6.0035;5.3306;3.546;2.0705;1.9297;1.6663;1.6627 +;-;-;-;-;-;-;-;-;- + 1177 NaN NaN 212978.3 NaN 12561 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15837 68.125 NaN 465300 35 0 121780 0.261 + 22811 QYLKILTSL 9 74 539.8288306018871 1077.6431082705742 2 540.3162841796875 MULTI HCD FTMS 0 0 0 15833 11641.0869140625 0.39370629315198197 -4 0.105621337890625 4 Unmodified _QYLKILTSL_ ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1 5.731851221503515 0.3075653528928475 1 {I|L}{I|L}S{M(Oxidation (M))|F} 4 6 20.918 0 0 1.9411 0 0 599.3975466024086 0 599.3975466024086 0 10.194093936868283 0 0 0 0 0 0 0 {I|L}{I|L}S{M(Oxidation (M))|F} 1.9411 - 81 + NaN NaN 159029.4 NaN 12562 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15838 68.128 NaN 599710 35 0 212200 0.261 + 25802 SLPEDFYHF 9 83 577.7613398827461 1153.5081268322922 2 577.7615356445312 MULTI HCD FTMS 0 0 0 15833 157389.28125 0.6120956058598096 -6 0.1554718017578125 5 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 20.453626601364224 0.18364154288633264 1 {[TV]|[{I|L}S]}V 3 7 27.192 0 0 2.3573 0 0 0 851.3005822368422 851.3005822368422 12.24301211992909 0 0 0 0 0.5 1.5228787452803376 0 0 {[TV]|[{I|L}S]}V 2.3573 - 327 NaN NaN 177152.7 NaN 12563 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15839 68.132 NaN 290710 35 0 24431 0.261 + 31692 VYKVPPFTF 9 77 549.3049190832124 1096.5952852332248 2 549.3054809570312 MULTI HCD FTMS 0 0 0 15833 82145.453125 0.8541553343796405 -10 0.26629638671875 6 Unmodified _VYKVPPFTF_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 63.960520009940105 0.0120409805053046 1 VY[{M(Oxidation (M))|F}T]PVKP{M(Oxidation (M))|F} 9 5 + 80.855 0 0 7.3733 7.3733 92.478 0 0 0 13.723637474483468 13.723637474483468 13.723637474483468 13.723637474483468 0 1.6747425010840047 1.6989700043360187 0.3807196863200844 0 VY[{M(Oxidation (M))|F}T]PVKP{M(Oxidation (M))|F};[YV]KVP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F};[YV]KVP[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F} 7.3733;6.1218;5.9404 -;+;- + 220 + NaN NaN 124692 NaN 12564 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15840 68.135 NaN 261090 35 0 71623 0.261 + 3241 EDRFETNFLL 10 51 642.3170235394488 1282.6194941456974 2 642.8172607421875 MULTI HCD FTMS 0 0 0 15833 54424.61328125 0.7403831816276026 -3 0.07596588134765625 7 Unmodified _EDRFETNFLL_ ENSG00000275572|ENST00000614228|GRIFIN 8.155526934196011 0.43213520406898465 1 HWD{I|L}{I|L} 5 8 36.454 0 0 2.8421 0 0 600.294725486525 0 600.294725486525 0 20.969100130080562 0 0 0 0.5 0 0 0 HWD{I|L}{I|L} 2.8421 - 66 NaN NaN 120189.3 NaN 12565 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15841 68.138 NaN 112980 35 0 13229 0.261 -1 MYDSFWRQF 9 47 648.2794678160986 NaN 0 648.2789916992188 PEAK HCD FTMS 0 0 0 15833 25847.34765625 0.5576779184046023 -2 0.0496368408203125 8 Oxidation (M) _M(Oxidation (M))YDSFWRQF_ ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF;nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1 8.745405648335112 0.25286782695573473 1 V 1 -1 9.732 0 0 0.75177 0 0 326.0444570171597 866.3972262018186 1192.4416832189784 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.75177 - 10 + NaN NaN 114831.3 NaN 12566 3273 15833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15843 68.143 NaN 3941200 35 0 1272700 0.327 + 24606 RYLPTGSFPF 10 74 592.8085720950354 1183.6025912568707 2 592.808837890625 MULTI HCD FTMS 0 0 0 15842 2104058 0.3752694276389373 5 -0.13915252685546875 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 96.93554129104106 0.00047009049263694176 1 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 103.41 0 0 8.7368 8.7368 96.611 0 0 0 18.77513725768253 92.44009708316895 18.77513725768253 31.564184743271753 0 2.774227503252014 1.3010299956639813 1.2302046884880937 0 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}GP{M(Oxidation (M))|F};[YR][TA][VP]S{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}PT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 8.7368;6.07;6.0001;5.381;3.641;1.9555 +;-;-;-;-;- + 332 NaN NaN 554205.9 NaN 12567 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15844 68.148 NaN 814180 35 0 289950 0.262 + 10231 IHSGLEVLL 9 56 490.7923563270418 979.5701597208836 2 490.7924499511719 MULTI HCD FTMS 0 0 0 15842 221423.625 0.438221222442934 3 -0.08271026611328125 2 Unmodified _IHSGLEVLL_ ENST00000585058.1_1_17:29850640-29851216:+|nuORF 20.453626601364224 0.18364154288633264 1 YNEV{I|L}{I|L} 6 5 50.878 0 0 5.1939 0 0 230.16298110175939 0 230.16298110175939 0 35.900253588913955 0 0 0 1.4247425010840047 0 0 0 YNEV{I|L}{I|L} 5.1939 - 114 NaN NaN 222799.7 NaN 12568 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15845 68.151 NaN 355760 35 0 43343 0.261 + 2409 DPNLEFVAM 9 53 526.242108478168 1050.469664023136 2 526.2417602539062 MULTI HCD FTMS 0 0 0 15842 108664.7265625 0.7008915564272961 -2 0.06285858154296875 3 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 57.72198328787511 0.020768266150574023 1 {I|L}E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 6 3 66.815 0 0 6.3605 0 0 326.12205702949376 0 326.12205702949376 0 57.86297847284061 0 0 0 2.4247425010840047 0 0.3807196863200844 0 + {I|L}E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 6.3605 + + 177 NaN NaN 145403.4 NaN 12569 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15846 68.155 NaN 258880 35 0 35885 0.261 + 29588 VAEHYLIQL 9 62 543.3031228870129 1084.5916928408258 2 543.3033447265625 MULTI HCD FTMS 0 0 0 15842 64552.5 0.03877130650038394 20 -0.5571441650390625 4 Unmodified _VAEHYLIQL_ REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF 29.081581746732265 0.1154664336125038 1 {I|L}{I|L}Q{I|L} 4 -1 47.18 0 0 4.3501 0 0 599.26957900215 0 599.26957900215 0 44.0815315012393 0 0 0 1.1747425010840047 0 0 0.3494850021680094 {I|L}{I|L}Q{I|L} 4.3501 + + 92 NaN NaN 123623.1 NaN 12570 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15847 68.158 NaN 232270 35 0 32957 0.261 -1 MKNHMFFI 8 68 550.2556557650513 1098.4967585969025 2 550.7582397460938 MULTI HCD FTMS 0 0 0 15842 61558.49609375 0.3241318665714063 12 -0.3359222412109375 5 2 Oxidation (M) _M(Oxidation (M))KNHM(Oxidation (M))FFI_ DTD1-RALGAPA2|1|fusion;ENSG00000188559|ENST00000202677|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.1924 0 0 933.4503088672135 0 933.4503088672135 0 -0.08864383480215565 -0.08864383480215565 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1924 + + 28 + NaN NaN 113656.3 NaN 12571 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15848 68.161 NaN 237250 35 0 17985 0.261 + 22261 QPDDLINQL 9 59 528.2719927026187 1054.5294324720373 2 528.2717895507812 MULTI HCD FTMS 0 0 0 15842 66833.8203125 0.3750001424651164 5 -0.13915252685546875 6 Unmodified _QPDDLINQL_ ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF 53.832793166522166 0.026208976789938845 1 {[QN]|[E{I|L}]|[KN]}[NP]D{I|L}NQ{I|L} 9 3 + 65.546 0 0 6.2157 6.2157 88.967 0 0 0 8.401662231496736 61.1092878455018 8.401662231496736 9.208187539523756 0 1.2134679910804405 0 0.6549471895720984 0.9749073637206093 {[QN]|[E{I|L}]|[KN]}[NP]D{I|L}NQ{I|L};{[QN]|[E{I|L}]|[KN]}[NP]D{I|L}GGQ{I|L};{[QN]|[E{I|L}]|[KN]}[NP]D{I|L}N[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[NP]DQVQ{I|L};{[QN]|[E{I|L}]|[KN]}[NP]DQV[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[NP]D[AG]VQ{I|L};{[QN]|[E{I|L}]|[KN]}[NP]D{I|L}[Q{I|L}]N;{[QN]|[E{I|L}]|[KN]}[NP]DQ{I|L}{I|L}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[C(Carbamidomethyl (C))R]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 6.2157;5.3425;5.3425;4.3112;3.438;3.438;3.1859;1.2814;0.74214 -;-;-;-;-;-;-;-;- 215 NaN NaN 119214.9 NaN 12572 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15849 68.165 NaN 147480 35 0 11653 0.261 + 33813 YLIPLYAL 8 47 483.2871468882108 NaN 0 483.2872009277344 PEAK HCD FTMS 0 0 0 15842 7902.3388671875 0.17518897775739437 1 -0.03308868408203125 7 Unmodified _YLIPLYAL_ ENST00000327827.11_1_16:9212636-9212786:+|nuORF 6.354104778181461 0.38822285293237185 1 A 1 7 11.99 0 0 1.243 0 0 131.09343246548377 759.4062308022317 890.4996632677155 0 0 0 0 0 0.5 0 0 0 + A 1.243 + + 12 + NaN NaN 99216.6 NaN 12573 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15850 68.168 NaN 341550 35 0 100550 0.261 + 9285 HPNIVSLQDVL 11 54 617.8433588378276 1233.6721647424552 2 617.8428955078125 MULTI HCD FTMS 0 0 0 15842 65216.6796875 0.17880336993792403 -6 0.15171051025390625 8 Unmodified _HPNIVSLQDVL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 25.997395711884035 0.23056625056501562 1 TVQDV{I|L} 6 6 53.008 0 0 4.2967 0 0 560.3074036481258 0 560.3074036481258 0 45.56047929209612 0 0 0 1.5 0 0.3807196863200844 0 TVQDV{I|L} 4.2967 - 137 NaN NaN 130264.4 NaN 12574 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15851 68.171 NaN 85449 35 0 6427.9 0.264 + 4951 FASCMGDS 8 50 409.147329868995 NaN 0 408.8570861816406 PEAK HCD FTMS 0 0 0 15842 4573.1552734375 0.5485345135268511 -5 0.13532257080078125 9 Unmodified _FASCMGDS_ ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000459929.5_1_1:185275751-185278625:-|nuORF;IVNS1ABP|p.S246Rfs*23|1|0.16|ENSG00000116679|chr1:185305563-185305564|-/CT|frameshift_variant 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107994.8 NaN 12575 3274 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15853 68.176 NaN 2210000 35 0 277120 0.327 + 1154 AYLESFYKF 9 107 584.289645907993 1166.5647388827858 2 584.2899169921875 MULTI HCD FTMS 0 0 0 15852 1671965 0.09068275892666247 17 -0.4782867431640625 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 191.38036244623 2.972967745938989E-13 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 133.99 0 0 11.486 11.486 96.946 0 0 0 74.07288017096553 14.973024840566467 14.973024840566467 16.796583177684127 0 3.2302046884880937 2 1.3001648626366045 0.6109243748081782 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};AY{I|L}{M(Oxidation (M))|F}DTYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYYAK{M(Oxidation (M))|F} 11.486;10.046;9.1481;9.0409;9.0179;8.8867;8.8417;8.6882;8.1203;8.0754 +;+;-;-;-;-;-;-;-;- + 9207 + NaN NaN 425493.6 NaN 12576 3275 15852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15854 68.181 NaN 859190 35 0 255850 0.261 + 2631 DVASVIVTKL 10 66 522.8184999735133 1043.6224470138266 2 522.818603515625 MULTI HCD FTMS 0 0 0 15852 461428.4375 0.5547894456430176 2 -0.04962158203125 2 Unmodified _DVASVIVTKL_ ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54 93.93812099017352 0.0007001511577108254 1 [DV]ASV{I|L}VTK{I|L} 10 0 + 90.448 0 0 8.6668 8.6668 96.342 0 0 0 20.993624753846092 71.45200907127119 20.993624753846092 29.195925227640984 0 1.829689690656103 1.5228787452803376 1.860924374808178 0 + + [DV]ASV{I|L}VTK{I|L};[VS]{[DA]|[EG]}V{I|L}VTK{I|L};[DV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}VTK{I|L};[KT]V{I|L}[VS]A[DV]{I|L} 8.6668;5.8692;4.3883;3.2496 +;-;-;- + 198 NaN NaN 217559.7 NaN 12577 3275 15852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15855 68.184 NaN 416570 35 0 41508 0.261 -1 MYRFSLAAF 9 92 561.2750930005781 1120.535633067956 2 561.289306640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))YRFSLAAF_ ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 18.13498045792455 0.20367413111508956 1 TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 7 -1 41.719 0 0 3.7231 0 0 310.09868056465 0 310.09868056465 0 2.838096733120281 0 0 0 0 0 0.805462187404089 0 TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 3.7231 - 766 NaN NaN 157997.2 NaN 12578 3275 15852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15856 68.188 NaN 373230 35 0 65992 0.261 + 19697 NYAAALETF 9 55 500.24241302616554 998.4702731191311 2 500.24237060546875 MULTI HCD FTMS 0 0 0 15852 135789.671875 0.6867983572865418 3 -0.07953643798828125 4 Unmodified _NYAAALETF_ ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF;nc|ENSG00000165416|Q9Y2Z0|SUGT1 82.5293158979368 0.005033931517079822 1 [YN]AAA{I|L}ET{M(Oxidation (M))|F} 9 0 + 86.754 0 0 8.6887 8.6887 95.313 0 0 0 78.33765193977312 16.478174818886373 16.478174818886373 17.83809673312028 0 2.412437995416459 1.5228787452803376 0.8807196863200843 0 + + [YN]AAA{I|L}ET{M(Oxidation (M))|F};[YN]AADVVT{M(Oxidation (M))|F};[YN][VG]G{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NAA{I|L}ET{M(Oxidation (M))|F};[YN]AAA{[YD]|[{M(Oxidation (M))|F}M]}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGAA{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QA]G{I|L}ET{M(Oxidation (M))|F} 8.6887;6.9022;5.1668;4.493;3.4088;3.1895;2.9901 +;-;-;-;-;-;- + 496 + NaN NaN 154521.7 NaN 12579 3275 15852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15857 68.191 NaN 236220 35 0 38848 0.261 + 23726 RQTEVFTLF 9 53 570.8060261531532 1139.5974993731063 2 570.8058471679688 MULTI HCD FTMS 0 0 0 15852 73483.5234375 0.8355011075003749 -1 0.03308868408203125 5 Unmodified _RQTEVFTLF_ ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5 27.628801355627647 0.12213550946336599 1 {M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F} 4 5 50.477 0 0 4.4294 0 0 613.31743056465 0 613.31743056465 0 44.90417829939986 0 0 0 1.4247425010840047 0 0.8807196863200843 0 + {M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F} 4.4294 + + 59 NaN NaN 127943.4 NaN 12580 3275 15852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15858 68.194 NaN 284260 35 0 28780 0.261 -1 SYMFVDENTF 10 69 634.76066195083 1267.50677096846 2 634.7609252929688 MULTI HCD FTMS 0 0 0 15852 76695.9765625 0.6546327183493289 -6 0.1684112548828125 6 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 27.223235318498237 0.2564750587861972 1 VYVRT 5 -1 22.423 0 0 1.769 0 0 291.0220759984123 355.0912264459594 646.1133024443717 0 0 0 0 0 0 0 0.3494850021680094 0 VYVRT 1.769 - 350 + NaN NaN 143434.4 NaN 12581 3275 15852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15860 68.199 NaN 2376400 35 0 394540 0.327 + 1238 AYLPVNESF 9 98 520.2583269513063 1038.5021009694126 2 520.2586059570312 MULTI HCD FTMS 0 0 0 15859 1056222.875 0.6000440422333915 3 -0.0830230712890625 1 Unmodified _AYLPVNESF_ ENSG00000167658|ENST00000309311|EEF2 174.72732175369546 1.2540765405420886E-09 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F} 9 0 + 107.35 0 0 10.337 10.337 96.198 0 0 0 23.699690177124126 81.39633709128657 23.699690177124126 14.528937514676485 0 2.8169015600442577 1.6989700043360187 0.5994850021680094 0.9361818737241734 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVENS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[DN]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVEGGS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EN[VP]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PDD[KA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EGG[VP]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ED[VP][KA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[DN]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 10.337;8.9378;8.5487;7.8048;7.3904;5.9176;5.5614;4.3702;3.5902;3.3262 +;-;-;-;-;-;-;-;-;- + 1032 NaN NaN 450436.2 NaN 12582 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15861 68.204 NaN 874440 35 0 52752 0.261 + 6338 FPFYYEIKM 9 73 627.2987212994602 1252.5828896657204 2 627.2988891601562 MULTI HCD FTMS 0 0 0 15859 531646.875 0.6324878524723674 13 -0.37313079833984375 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 86.33184430468982 0.004622086694044132 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F} 9 2 + 71.06 0 0 5.673 5.673 82.584 0 0 0 0.24735947860492047 1.7525094569248267 0.24735947860492047 0.24735947860492047 0 1.75 1.6989700043360187 0.6549471895720984 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[TA][PG]E{I|L}K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]PY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK[PG][TA]{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE 5.673;5.6533;5.6104;5.5331;4.9221;3.7058;3.6772;3.5857;3.2403;3.1776 -;+;+;-;-;-;-;-;-;- + 2840 NaN NaN 221372 NaN 12583 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15862 68.208 NaN 181660 35 0 30136 0.263 + 1956 DAINDANLL 9 62 479.74558345433394 NaN 0 479.7455139160156 PEAK HCD FTMS 0 0 0 15859 119861.7265625 0.6017999907429271 3 -0.0830230712890625 3 Unmodified _DAINDANLL_ ENSG00000160752|ENST00000368356|FDPS;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 110.5527297667825 2.165091618498739E-08 1 {I|L}NDAN 5 4 55.309 0 0 5.7765 0 0 186.06317511003664 241.15560327701408 427.21877838705075 0 0 0 0 0 2.3807196863200843 0 0.6861818737241735 0.9947026752325154 + {I|L}NDAN 5.7765 + + 97 + NaN NaN 116587.3 NaN 12584 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15863 68.211 NaN 347580 35 0 37161 0.261 + 31400 VYAKYWIYV 9 75 602.8236741805124 1203.6327954278247 2 602.8240966796875 MULTI HCD FTMS 0 0 0 15859 126279.6015625 0.4862203287871761 3 -0.0830230712890625 4 Unmodified _VYAKYWIYV_ ENSG00000103335|ENST00000301015|PIEZO1 48.345845343767074 0.03388484103555672 1 [YV]AK[WY]{I|L}YV 9 0 + 48.055 0 0 3.9925 3.9925 87.646 0 0 0 11.116962104583337 18.746068678535792 11.116962104583337 18.908555305749314 0 2.048455006504028 1.5228787452803376 0 0 + + [YV]AK[WY]{I|L}YV;[Y{I|L}]KG[WY]{I|L}YV;[KS]{M(Oxidation (M))|F}V[WY]{I|L}YV 3.9925;2.4216;1.2945 +;-;- + 733 NaN NaN 151902.8 NaN 12585 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15864 68.214 NaN 327420 35 0 70930 0.261 + 3847 EPIPYEFMA 9 62 556.7519991332617 1111.4894453333234 2 556.7521362304688 MULTI HCD FTMS 0 0 0 15859 131715.453125 0.7708055265670763 3 -0.0830230712890625 5 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 64.23631603340823 0.01165516075559909 1 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4 5 55.918 0 0 5.0309 0 0 599.2956410138687 0 599.2956410138687 0 31.141303353600094 0 0 0 1.5 0 1.1989700043360187 0 + E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 5.0309 + + 121 NaN NaN 138546.6 NaN 12586 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15865 68.218 NaN 328990 35 0 34829 0.261 + 5178 FFDAELSQM 9 64 552.2390895993532 1102.4636262655063 2 552.2393188476562 MULTI HCD FTMS 0 0 0 15859 59365.203125 0.01726783652841028 116 -3.2029037475585938 6 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 45.739877483867886 0.03899552410870734 1 AE{I|L}SQ{M(Oxidation (M))|F} 6 3 60.636 0 0 5.5001 0 0 409.15998964616875 0 409.15998964616875 0 47.67728766960431 0 0 0 2.274227503252014 0 0.3252574989159953 0 + AE{I|L}SQ{M(Oxidation (M))|F} 5.5001 + + 326 + NaN NaN 141098.9 NaN 12587 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15866 68.221 NaN 133470 35 0 11275 0.261 + 10291 IKVYNAPIL 9 54 515.8183938544618 1029.6222347757234 2 515.8184204101562 MULTI HCD FTMS 0 0 0 15859 36151.01171875 0.5524071663607871 1 -0.026580810546875 7 Unmodified _IKVYNAPIL_ REV__ENSG00000162928|ENST00000295030|PEX13 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 -1 25.969 0 0 2.5222 0 0 785.4446938365882 0 785.4446938365882 0 17.026755900123256 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.5222 + + 22 NaN NaN 112514.6 NaN 12588 3276 15859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15868 68.226 NaN 778930 35 0 213280 0.327 + -1 LMWQICSRC 9 85 606.7699751250075 1211.5253973168149 2 607.28759765625 MULTI HCD FTMS 0 0 0 15867 25717.37890625 0.31566855297952534 8 -0.23583221435546875 1 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))WQIC(Carbamidomethyl (C))SRC_ REV__ENST00000496169.5_1_7:140156452-140158931:-|nuORF 12.531546534597751 0.2520865569484384 1 MQ{M(Oxidation (M))|F}ENHP 7 -1 43.994 0 0 3.6313 0 0 0 325.11994348697505 325.11994348697505 6.94029367987433 0 0 0 0 0 0 0.28872548999643577 0.3807196863200844 MQ{M(Oxidation (M))|F}ENHP 3.6313 - 1600 + NaN NaN 212885.1 NaN 12589 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15869 68.23 NaN 551870 35 0 73740 0.261 + 32107 VYSEVAAYEF 10 57 589.2744667578457 1176.5343805824914 2 589.2743530273438 MULTI HCD FTMS 0 0 0 15867 226349.84375 0.2559366662318134 6 -0.1689910888671875 2 Unmodified _VYSEVAAYEF_ ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF 81.89019881105858 0.0034965057646611547 1 [YE]SV{[VA]|[{I|L}G]}AYE{M(Oxidation (M))|F} 10 2 + 86.731 0 0 7.3717 7.3717 87.664 0 0 0 12.728787452803374 16.53212513775344 12.728787452803374 4.4897000433601875 0 1.8494850021680094 1.3010299956639813 1.9361818737241734 0 [YE]SV{[VA]|[{I|L}G]}AYE{M(Oxidation (M))|F};[YE]AA[{I|L}T]AYE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]SA[{I|L}T]AYE{M(Oxidation (M))|F};[YT]DV{[VA]|[{I|L}G]}AYE{M(Oxidation (M))|F};[YE]SV[Q{I|L}]YE{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}T]{[VA]|[{I|L}G]}AYE{M(Oxidation (M))|F};[YT]DV[Q{I|L}]YE{M(Oxidation (M))|F};{[ET]|[MV]}{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}T]AYE{M(Oxidation (M))|F};[YE]SV{[VA]|[{I|L}G]}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}T][Q{I|L}]YE{M(Oxidation (M))|F} 7.3717;6.9901;6.2898;6.0773;6.0679;5.4832;4.7736;4.6961;4.3074;4.1795 -;-;-;-;-;-;-;-;-;- 439 NaN NaN 174530.1 NaN 12590 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15870 68.234 NaN 477460 35 0 41570 0.261 + 26685 SYANYFIRL 9 93 573.8012983781484 1145.5880438230968 2 573.8013305664062 MULTI HCD FTMS 0 0 0 15867 179117.984375 0.3136442622575851 6 -0.1689910888671875 3 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 100.0907132914201 0.004261551473353346 1 {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L} 9 0 + 89.166 0 0 7.7834 7.7834 94.057 0 0 0 5.768696479293496 48.33999355612811 5.768696479293496 19.322581265925436 0 3 0 0.5752574989159953 1.4361818737241734 + + {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}{I|L}R{I|L};[YQ][SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[HA]{M(Oxidation (M))|F}{I|L}[VG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};{[CT]|[{M(Oxidation (M))|F}G]}AD[HA]{M(Oxidation (M))|F}{I|L}[VG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};{I|L}P{[ET]|[MV]}[HK]A{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{I|L}P{[ET]|[MV]}[HK]AG{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.7834;6.0967;5.6902;4.7674;3.9489;3.2377;2.6591;2.4339;2.3123;1.1916 +;-;-;-;-;-;-;-;-;- + 1604 NaN NaN 162884.5 NaN 12591 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15871 68.238 NaN 247880 35 0 54657 0.261 + 8652 HFDMAVYL 8 40 498.23632099331945 994.4580890534389 2 498.23651123046875 MULTI HCD FTMS 0 0 0 15867 107915.8359375 0.7191868911768834 4 -0.1126556396484375 4 Unmodified _HFDMAVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 1 VY{I|L} 3 5 33.188 0 0 3.3373 0 0 601.231737205275 0 601.231737205275 0 31.197887582883936 0 0 0 0.8494850021680094 0 0 0 + VY{I|L} 3.3373 + + 14 NaN NaN 116882.3 NaN 12592 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15872 68.241 NaN 143480 35 0 8747.4 0.261 + 29244 TYLNWLVRM 9 55 606.3153328581878 1210.6161127831756 2 606.3154907226562 MULTI HCD FTMS 0 0 0 15867 63427.39453125 0.44864780763603074 7 -0.199066162109375 5 Oxidation (M) _TYLNWLVRM(Oxidation (M))_ ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 59.368380827593164 0.01846506874148156 1 [YT]{I|L}RWAVGV{M(Oxidation (M))|F} 10 4 + 93.326 0 0 7.7089 7.7089 88.533 0 0 0 9.847594070116017 9.847594070116017 9.847594070116017 5.228787452803374 0 1.9247425010840047 2 0 0.8494850021680094 [YT]{I|L}RWAVGV{M(Oxidation (M))|F};[YT]R{I|L}WAVGV{M(Oxidation (M))|F};[YT]R{I|L}WN{I|L}V{M(Oxidation (M))|F};[YT]{I|L}NW{I|L}VR{M(Oxidation (M))|F};[YT]GVAW{I|L}VR{M(Oxidation (M))|F};[YT]RAW{I|L}VGV{M(Oxidation (M))|F};[YT]R{I|L}WGG{I|L}V{M(Oxidation (M))|F};[YT]{I|L}GGW{I|L}VR{M(Oxidation (M))|F};[YT]{I|L}RWN{I|L}V{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}WAVGV{M(Oxidation (M))|F} 7.7089;7.277;6.9309;6.8955;6.5142;6.3019;6.1702;6.1349;5.8714;5.8304 -;-;-;+;-;-;-;-;-;- + 835 NaN NaN 100069.9 NaN 12593 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15873 68.244 NaN 248230 35 0 95364 0.264 + 24470 RYLDSLKAIVF 11 39 442.2587669767779 1323.7544715305337 3 442.2587585449219 MULTI HCD FTMS 0 0 0 15867 70595.6640625 0.347611898683496 -3 0.08271026611328125 6 Unmodified _RYLDSLKAIVF_ ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN 5.868138319507137 0.39318500527288264 1 V{M(Oxidation (M))|F} 2 9 30.969 0 0 2.3395 0 0 1059.6076647451805 0 1059.6076647451805 0 30.969100130080562 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3395 + + 4 + NaN NaN 128851.8 NaN 12594 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15874 68.248 NaN 121420 35 0 22731 0.261 -1 MPDLPNVGL 9 43 486.246975438636 970.479397944072 2 486.246826171875 MULTI HCD FTMS 0 0 0 15867 60144.6640625 0.6135576454007268 -7 0.18837738037109375 7 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.042465956692817 0.2476723265019929 1 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.2950916974625 0 683.2950916974625 0 32.21848749616356 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 12 NaN NaN 91709 NaN 12595 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15875 68.251 NaN 163330 35 0 18517 0.261 + 26101 SPILRDLVL 9 55 513.322050703579 1024.6295484739578 2 513.322998046875 MULTI HCD FTMS 0 0 0 15867 41094.578125 0.7108049636429237 4 -0.1126556396484375 8 Unmodified _SPILRDLVL_ ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant 10.799506525563784 0.2670509983294061 1 V{I|L} 2 7 22.959 0 0 2.2407 0 0 794.4672532438993 0 794.4672532438993 0 16.505149978319906 0 0 0 0.3494850021680094 0 0 0 + V{I|L} 2.2407 + + 26 NaN NaN 106406.4 NaN 12596 3277 15867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15877 68.256 NaN 1251700 35 0 157060 0.327 + 12913 KYGIVQEFF 9 104 565.7975877124654 1129.5806224917308 2 565.7977905273438 MULTI HCD FTMS 0 0 0 15876 796656.5625 0.7230095449814825 2 -0.056243896484375 1 Unmodified _KYGIVQEFF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 118.0683919894846 0.0016252157255221692 1 [Y{I|L}]GKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 83.699 0 0 7.4098 7.4098 87.391 0 0 0 7.045831976780477 14.130128452906803 7.045831976780477 3.679767852945943 0 2.1989700043360187 1.154901959985743 0.3252574989159953 0.785666875892183 [Y{I|L}]GKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]KGVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}VQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GKV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GVKQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}GVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]VAVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]KGV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}V[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.4098;7.084;6.786;6.5946;6.5447;6.484;6.3468;6.2907;6.2688;5.9708 -;-;+;-;-;-;-;-;-;- + 4761 NaN NaN 267406.2 NaN 12597 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15878 68.26 NaN 1139900 35 0 118030 0.261 + 32108 VYSEVAAYEF 10 93 589.2744667578457 1176.5343805824914 2 590.2984008789062 MULTI HCD FTMS 0 0 0 15876 50698.078125 0.2561241472466558 8 -0.223297119140625 2 Unmodified _VYSEVAAYEF_ ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF 38.175570920033316 0.1612389583597779 1 TTQT{I|L}{I|L}YE{M(Oxidation (M))|F} 9 7 69.012 0 0 5.8657 0 0 61.96962104886149 0 61.96962104886149 0 14.175879737363658 0 0 0 0.9634679910804405 0 1.9916440611282624 0.3252574989159953 TTQT{I|L}{I|L}YE{M(Oxidation (M))|F} 5.8657 - 5877 + NaN NaN 262415.5 NaN 12598 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15879 68.264 NaN 746330 35 0 83579 0.261 + 7679 FYLEGGFSKF 10 81 597.7950511296735 1193.575549326147 2 597.7952880859375 MULTI HCD FTMS 0 0 0 15876 402563.1875 0.0968585200945672 15 -0.43155670166015625 3 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 91.08480475639789 0.0009191514194420671 1 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 80.684 0 0 6.7599 6.7599 86.388 0 0 0 4.1465188641551265 10.607799220937508 4.1465188641551265 4.1465188641551265 0 2.610924374808178 0 1.0752574989159953 0 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[DG]SK{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[DG]SK{M(Oxidation (M))|F} 6.7599;6.4125;5.9884;5.8711;5.7937;5.641;5.0997;5.0222;4.6552;4.1139 -;-;+;-;-;+;-;-;-;- + 2160 NaN NaN 202523.6 NaN 12599 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15880 68.267 NaN 426390 35 0 27243 0.261 + 27189 SYNNFFRMF 9 72 621.2738121112648 1240.5330712893294 2 621.2736206054688 MULTI HCD FTMS 0 0 0 15876 194077.78125 0.038397267932325625 80 -2.17822265625 4 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 103.35351024395868 0.004027461563756449 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 65.75 0 0 5.3002 0 0 63.99677444358628 0 63.99677444358628 0 52.47933455448525 0 0 0 2.079689690656103 0 0 0.3807196863200844 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.3002 - 548 + NaN NaN 146631.9 NaN 12600 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15881 68.271 NaN 679460 35 0 45526 0.261 + 22955 QYVYWLHML 9 82 634.8103092675826 1267.6060656019652 2 634.8103637695312 MULTI HCD FTMS 0 0 0 15876 182443.71875 0.5208966754844919 -7 0.19196319580078125 5 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 98.80718514221951 0.0042951848413998895 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L} 10 8 + 72.145 0 0 5.6914 5.6914 86.424 0 0 0 11.03794667124717 23.039909026490122 11.03794667124717 8.762874945799766 0 1.1549471895720984 1.3979400086720375 0.7742275032520141 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[DA]|[EG]}RVYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]VC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}W[VG]VYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}AAC(Carbamidomethyl (C)){I|L} 5.6914;5.0002;4.9685;4.7244;4.2772;4.1709;4.0015;3.9717;3.8952;3.5389 -;-;-;-;-;-;-;-;-;- 909 NaN NaN 180617.2 NaN 12601 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15882 68.274 NaN 383400 35 0 33550 0.262 + 23863 RSMLPHSSF 9 79 531.2615141841188 NaN 0 531.2491455078125 PEAK HCD FTMS 0 0 0 15876 9556.630859375 0.19351161573149403 10 -0.29033660888671875 6 Unmodified _RSMLPHSSF_ ENST00000235382.6_1_1:192781079-192781220:+|nuORF 19.256988751693697 0.19238547928067054 1 C{I|L} 2 8 10.969 0 0 1.0343 0 0 131.09784025672928 710.2770861833743 841.3749264401035 0 0 0 0 0 0 0 0 0 C{I|L} 1.0343 - 128 + NaN NaN 137795 NaN 12602 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15883 68.277 NaN 136320 35 0 13260 0.261 + 11060 IYGCFHVQ 8 52 483.72859343376405 NaN 0 483.71563720703125 PEAK HCD FTMS 0 0 0 15876 7253.7001953125 0.20172822557875755 -2 0.05649566650390625 7 Unmodified _IYGCFHVQ_ nc|ENSG00000182077|Q3KNS1|PTCHD3 5.760428011301431 0.38822285293237185 1 N{M(Oxidation (M))|F} 2 7 9.464 0 0 0.98027 0 0 131.12622677130906 570.1876959741696 701.3139227454787 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 0.98027 - 18 + NaN NaN 116340.8 NaN 12603 3278 15876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15885 68.282 NaN 1912200 35 0 611220 0.327 + 24607 RYLPTGSFPF 10 68 592.8085720950354 1183.6025912568707 2 592.8087768554688 MULTI HCD FTMS 0 0 0 15884 1166684.75 0.20808414899569147 10 -0.29010772705078125 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 75.5705956163825 0.010984675281887875 1 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 88.498 0 0 7.477 7.477 94.583 0 0 0 4.884381005764311 77.5287409179711 4.884381005764311 30.8116097541118 0 2.885151878060192 0 1.2302046884880937 0 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 7.477;4.8738;4.8641;2.1494;0.37509 +;-;-;-;- + 254 NaN NaN 377443.5 NaN 12604 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15886 68.287 NaN 649200 35 0 74458 0.261 + 13232 KYMDIEFDF 9 67 612.2680883328802 1222.5216237325603 2 612.2684936523438 MULTI HCD FTMS 0 0 0 15884 364939.6875 0.13996023034357957 30 -0.8138504028320312 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 49.55428908609986 0.03219431099695407 1 E{M(Oxidation (M))|F}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 59.487 0 0 4.8659 0 0 262.0953846662125 0 262.0953846662125 0 39.82139188265293 0 0 0 1.5 0 0.6307196863200843 0 E{M(Oxidation (M))|F}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8659 - 302 NaN NaN 183230.2 NaN 12605 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15887 68.29 NaN 721650 35 0 248420 0.261 + 25803 SLPEDFYHF 9 85 577.7613398827461 1153.5081268322922 2 577.7613525390625 MULTI HCD FTMS 0 0 0 15884 257131.859375 1 0 0 3 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 34.10243960390752 0.09241788333544565 1 {I|L}RAVQ{M(Oxidation (M))|F} 6 7 32.133 0 0 2.7857 0 0 421.080823712145 0 421.080823712145 0 1.6971504954749825 0 0 0 0.3054621874040891 0 0 0.3494850021680094 {I|L}RAVQ{M(Oxidation (M))|F} 2.7857 - 984 + NaN NaN 188972.8 NaN 12606 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15888 68.294 NaN 346880 35 0 122960 0.262 + 10232 IHSGLEVLL 9 42 490.7923563270418 979.5701597208836 2 490.7923889160156 MULTI HCD FTMS 0 0 0 15884 185259.625 0.36664876811053715 8 -0.23419952392578125 4 Unmodified _IHSGLEVLL_ ENST00000585058.1_1_17:29850640-29851216:+|nuORF 15.847184025352803 0.2234401846867398 1 EV{I|L}{I|L} 4 5 35.979 0 0 3.6729 0 0 507.2639332501969 0 507.2639332501969 0 25.00956171512948 0 0 0 0.9247425010840047 0 0 0 + EV{I|L}{I|L} 3.6729 + + 47 NaN NaN 127822.7 NaN 12607 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15889 68.297 NaN 416000 35 0 25605 0.261 -1 YLSVTMMQL 9 82 559.2667873507436 1116.519021768287 2 559.757568359375 MULTI HCD FTMS 0 0 0 15884 8143.50048828125 0.8260065009194695 -1 0.02652740478515625 5 2 Oxidation (M) _YLSVTM(Oxidation (M))M(Oxidation (M))QL_ ENST00000590311.5_1_17:67109267-67109498:-|nuORF 18.13498045792455 0.20367413111508956 1 YAQV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 36.507 0 0 3.2697 3.2697 79.937 0 0 0 5.929089686793823 1.07886170626103 1.07886170626103 1.549471895720984 0 0.15494718957209852 0 0.5114393726401688 0 YAQV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y[KA]V[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y[YN][DV]VTP{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KT{I|L}[VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][PA][HM]KEE;[Y{I|L}]SV[DV][HD]{[VA]|[{I|L}G]};[Y{I|L}][PA]VD[VP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]TV[DV][HD]{[VA]|[{I|L}G]};[{M(Oxidation (M))|F}E]K[HM]VP{[ET]|[MV]};{[{M(Oxidation (M))|F}D]|MM}AAT{I|L}[VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2697;3.1309;2.443;2.0468;1.6966;1.4526;1.2551;0.92748;0.81989;0.59374 -;-;-;-;-;-;-;-;-;- 412 + NaN NaN 145166.3 NaN 12608 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15890 68.3 NaN 625450 35 0 55017 0.261 + 16114 LPTENELTF 9 97 532.2687650102198 1062.5229770872395 2 532.2686157226562 MULTI HCD FTMS 0 0 0 15884 126091.9140625 0.6318081351609948 -3 0.0830230712890625 6 Unmodified _LPTENELTF_ ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 41.8396318013385 0.056899836730939755 1 [Y{I|L}]K{M(Oxidation (M))|F}[MN]T{M(Oxidation (M))|F} 8 5 + 46.801 0 0 4.4047 4.4047 81.988 0 0 0 3.449171216688356 8.344946382456229 3.449171216688356 3.449171216688356 0 1 1.154901959985743 0.3252574989159953 0.3494850021680094 [Y{I|L}]K{M(Oxidation (M))|F}[MN]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VK[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}K[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F};[YK]{I|L}{M(Oxidation (M))|F}[MN]T{M(Oxidation (M))|F};[Y{I|L}]AVK[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F};[Y{I|L}]G{I|L}K[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F};[Y{I|L}]K{[VA]|[{I|L}G]}[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RH]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}V{[HG]|PP}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VVK[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F} 4.4047;4.08;3.7337;3.664;3.3165;2.9701;2.9419;2.5241;2.476;2.3898 -;-;-;-;-;-;-;-;-;- 1157 NaN NaN 170731.9 NaN 12609 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15891 68.304 NaN 292240 35 0 60903 0.261 -1 0 59 604.7680411660131 1207.521529398826 2 604.7683715820312 MULTI HCD FTMS 0 0 0 15884 98932.3125 0.031043485280105757 119 -3.290374755859375 7 NaN NaN 1 HHN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 -1 49.373 0 0 4.0888 0 0 392.20405776191564 0 392.20405776191564 0 44.76911912748342 0 0 0 1.4247425010840047 0 0 0 HHN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.0888 - 187 NaN NaN 129079.2 NaN 12610 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15892 68.307 NaN 219770 35 0 22756 0.261 + 31693 VYKVPPFTF 9 72 549.3049190832124 1096.5952852332248 2 549.3051147460938 MULTI HCD FTMS 0 0 0 15884 71161.921875 0.7399476521450923 -4 0.1060638427734375 8 Unmodified _VYKVPPFTF_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 72.96794272382148 0.008127836904478181 1 [YV]KVP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F} 9 0 + 65.155 0 0 5.9416 5.9416 84.263 0 0 0 2.7461342107709186 47.68114684785509 2.7461342107709186 2.9096420065966697 0 2.2302046884880937 1.6989700043360187 0 0 + + [YV]KVP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F};[YV]KVP[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F};VY[{M(Oxidation (M))|F}T]PVKP{M(Oxidation (M))|F} 5.9416;5.6763;5.657 +;-;- + 177 NaN NaN 114629 NaN 12611 3279 15884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15894 68.312 NaN 763480 35 0 248480 0.327 + 9286 HPNIVSLQDVL 11 69 617.8433588378276 1233.6721647424552 2 617.84326171875 MULTI HCD FTMS 0 0 0 15893 364739.65625 1 0 0 1 Unmodified _HPNIVSLQDVL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 68.4839486629058 0.016794639141754924 1 [YT]A[KP]S{I|L}QDV 10 6 81.749 0 0 6.6265 0 0 0 128.07167305730505 128.07167305730505 67.14484880297397 0 0 0 0 2.1861818737241734 1.6989700043360187 0.6694451763165201 0.3807196863200844 [YT]A[KP]S{I|L}QDV 6.6265 - 833 NaN NaN 195579.4 NaN 12612 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15895 68.316 NaN 1145500 35 0 152380 0.261 + -1 GLWSLSLQPM 10 108 595.30117718957 1188.58780144594 2 595.3219604492188 MULTI HCD FTMS 0 0 0 15893 59623 0.6460511970421511 16 -0.4469146728515625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))GLWSLSLQPM(Oxidation (M))_ REV__chr19:15934409-15934694|124|21.61|0.13|7.41|-|1|CYP4F11,None|1;REV__ENSG00000171903|ENST00000402119|CYP4F11 17.11289562659939 0.35104376501799556 1 {[{M(Oxidation (M))|F}D]|MM}V[PA]P{I|L}AVN{M(Oxidation (M))|F} 11 -1 + 48.448 0 0 4.0761 4.0761 80.874 0 0 0 1.2575546854158333 6.527741184173998 1.2575546854158333 1.8839576472322719 0 0.4247425010840047 0 0.2742275032520141 0.4247425010840047 {[{M(Oxidation (M))|F}D]|MM}V[PA]P{I|L}AVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[PA]P{I|L}ANV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[{I|L}P][PA]AVN{M(Oxidation (M))|F};[YV][KA][VS]YVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[PA]P{I|L}AVGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[{I|L}P][PA]ANV{M(Oxidation (M))|F};YTNA{I|L}P[PA]VP{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KS]VVYVN{M(Oxidation (M))|F};[YV][KA][VS]YNV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D[PA]P{I|L}AVN{M(Oxidation (M))|F} 4.0761;3.9176;3.0866;3.0858;2.9507;2.9281;2.8267;2.7109;2.7074;2.6852 -;-;-;-;-;-;-;-;-;- 1968 NaN NaN 260787 NaN 12613 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15896 68.32 NaN 680830 35 0 68080 0.261 + 13113 KYLGLLENL 9 91 531.8130218771535 1061.6114908211068 2 531.8135375976562 MULTI HCD FTMS 0 0 0 15893 256848.34375 0.8023297505559541 -3 0.08615875244140625 3 Unmodified _KYLGLLENL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 75.5705956163825 0.007285660612518157 1 [YK]{I|L}G{I|L}{I|L}EN{I|L} 9 0 + 63.664 0 0 5.9969 5.9969 89.04 0 0 0 3.688215083997939 3.688215083997939 3.688215083997939 10.440680443502757 0 2.7179001828205482 0 0.7302046884880937 0.8882104921644451 + + [YK]{I|L}G{I|L}{I|L}EN{I|L};[YK]{I|L}G{I|L}{I|L}QD{I|L};[YK]{I|L}G{I|L}{I|L}EGG{I|L};[YK]{I|L}G{I|L}{I|L}[AG]D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]KEN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]EKN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]KEGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]EKGG{I|L} 5.9969;5.0134;4.7821;3.6158;3.6129;2.8795;2.7455;2.0121 +;-;-;-;-;-;-;- + 723 + NaN NaN 185664.2 NaN 12614 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15897 68.324 NaN 275100 35 0 27696 0.261 -1 DPNLEFVAM 9 58 526.242108478168 1050.469664023136 2 526.2418212890625 MULTI HCD FTMS 0 0 0 15893 111020.09375 0.7160837630082894 4 -0.11290740966796875 4 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 38.175570920033316 0.07371992880350783 1 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 60.701 0 0 5.7785 0 0 439.20637164207966 0 439.20637164207966 0 51.74865027867405 0 0 0 2.4247425010840047 0 0 0 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.7785 + + 74 + NaN NaN 120015.1 NaN 12615 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15898 68.327 NaN 267480 35 0 77684 0.261 + 3954 EQFQSRMQDL 10 54 641.2989295999437 1280.5833062666873 2 642.3170166015625 MULTI HCD FTMS 0 0 0 15893 9008.662109375 0.4156962819330217 -4 0.11273956298828125 5 Unmodified _EQFQSRMQDL_ REV__ENSG00000135976|ENST00000420699|ANKRD36;REV__ENSG00000174501|ENST00000295246|ANKRD36C;REV__ENSG00000196912|ENST00000359901|ANKRD36B;REV__ENST00000494336.1_1_2:97911343-97914952:+|nuORF;REV__nc|ENSG00000174501|Q5JPF3-2|ANKRD36C;REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C 8.155526934196011 0.43213520406898465 1 E{I|L}{M(Oxidation (M))|F} 3 -1 23.812 0 0 1.8595 0 0 0 888.3736055963499 888.3736055963499 7.04119982655925 0 0 0 0 0 0 0 0 E{I|L}{M(Oxidation (M))|F} 1.8595 - 104 + NaN NaN 120632 NaN 12616 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15899 68.33 NaN 301270 35 0 21837 0.262 + 27122 SYMGHFDLL 9 81 541.7524296466896 1081.4903063601791 2 541.7525024414062 MULTI HCD FTMS 0 0 0 15893 97509.359375 0.01966387070743614 46 -1.2504959106445312 6 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 42.09456458481378 0.05572955244001856 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EA[QP]C{M(Oxidation (M))|F}{I|L} 9 8 + 23.869 0 0 2.2071 2.2071 81.913 0 0 0 0.8441734104857836 1.434465871653984 0.8441734104857836 7.064404002582023 0 0.3807196863200844 0 0.6139829889124311 0.2742275032520141 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EA[QP]C{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KP][WC(Carbamidomethyl (C))]E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EA[WC(Carbamidomethyl (C))]E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EA[QP]C{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EA[KC]DKN;[HM]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}VS{I|L} 2.2071;1.5539;1.4949;1.4082;0.75948;0.47779 -;-;-;-;-;- 524 NaN NaN 127274.6 NaN 12617 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15900 68.334 NaN 174870 35 0 15195 0.261 + 13704 KYPLLLDNI 9 61 544.8209217349369 1087.6272905366736 2 544.8218383789062 MULTI HCD FTMS 0 0 0 15893 36150.859375 0.4543444377611422 -6 0.1688690185546875 7 Unmodified _KYPLLLDNI_ ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12 35.61225514009592 0.08548698421724198 1 [YK][{I|L}P]{I|L}{I|L}DN{I|L} 9 0 + 49.504 0 0 4.5515 4.5515 85.5 0 0 0 5.034693515935089 34.810990509216495 5.034693515935089 9.208187539523749 0 2.142159058960253 0 0 0 + + [YK][{I|L}P]{I|L}{I|L}DN{I|L};[YK][{I|L}P]{I|L}{I|L}DGG{I|L};[YK][{I|L}P]D{I|L}{I|L}N{I|L} 4.5515;3.7049;1.4172 +;-;- + 109 NaN NaN 104092.9 NaN 12618 3280 15893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15902 68.338 NaN 1432400 35 0 192930 0.327 + 1155 AYLESFYKF 9 88 584.289645907993 1166.5647388827858 2 584.2899169921875 MULTI HCD FTMS 0 0 0 15901 948499.9375 0.0514440141834709 23 -0.6065902709960938 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 149.91393105778798 8.917243180786556E-06 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 125.53 0 0 10.761 10.761 93.073 0 0 0 71.88039076304328 14.973024840566467 14.973024840566467 8.539171939081172 0 3.2302046884880937 2 0.9361818737241735 0.3054621874040891 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};AY{I|L}{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YEAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYK{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 10.761;10.029;9.1311;9.0617;8.8489;8.7882;7.8819;7.6143;7.6102;7.4922 +;+;-;-;-;-;-;-;-;- + 5815 + NaN NaN 317099 NaN 12619 3281 15901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15903 68.343 NaN 1795400 35 0 238180 0.261 + 12916 KYGLGFQII 9 98 519.8019092773395 1037.589265621479 2 519.8030395507812 MULTI HCD FTMS 0 0 0 15901 484700 0.8098990821798182 -1 0.02649688720703125 2 Unmodified _KYGLGFQII_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 41.8396318013385 0.056899836730939755 1 SERKQ{I|L}{I|L} 7 6 44.548 0 0 4.2934 0 0 165.07922560859532 0 165.07922560859532 0 3.921663069067648 0 0 0 0.805462187404089 0 1.086696871556164 0.28872548999643577 SERKQ{I|L}{I|L} 4.2934 - 1497 NaN NaN 370514.8 NaN 12620 3281 15901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15904 68.347 NaN 582580 35 0 36603 0.261 + 6339 FPFYYEIKM 9 71 627.2987212994602 1252.5828896657204 2 627.2989501953125 MULTI HCD FTMS 0 0 0 15901 295878.71875 0.35199999137484456 18 -0.5088882446289062 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 80.5 0 0 6.4267 6.4267 84.319 0 0 0 1.136218907515314 1.136218907515314 1.136218907515314 1.136218907515314 0 2.584121882396211 0 0.3054621874040891 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYE{M(Oxidation (M))|F}{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE 6.4267;6.336;6.3319;5.7921;5.3788;5.1989;4.7603;4.7192;4.4954;3.9557 +;-;+;-;-;-;-;-;-;- + 2557 + NaN NaN 155953.5 NaN 12621 3281 15901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15905 68.35 NaN 400440 35 0 72540 0.262 + 2632 DVASVIVTKL 10 72 522.8184999735133 1043.6224470138266 2 522.818603515625 MULTI HCD FTMS 0 0 0 15901 110890.9140625 0.13332751893858272 8 -0.23389434814453125 4 Unmodified _DVASVIVTKL_ ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54 29.84058131909904 0.23356904650364865 1 [DV]A[VS]{I|L}VTK{I|L} 10 0 + 45.384 0 0 4.3487 4.3487 89.85 0 0 0 16.66817709623701 17.452359395051722 16.66817709623701 45.38418440905894 0 0.4247425010840047 1.6989700043360187 0.3054621874040891 0 + + [DV]A[VS]{I|L}VTK{I|L} 4.3487 + + 98 NaN NaN 144852.1 NaN 12622 3281 15901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15906 68.353 NaN 251890 35 0 29764 0.261 + 32480 WEQKATVI 8 45 487.76888219008293 973.5232114469659 2 487.76898193359375 MULTI HCD FTMS 0 0 0 15901 106182.515625 0.7585118094425313 -2 0.05621337890625 5 Unmodified _WEQKATVI_ ENSG00000081237|ENST00000442510|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC 29.081581746732265 0.3711897268585781 1 ATV{I|L} 4 4 51.186 0 0 5.2578 0 0 571.2755563601258 0 571.2755563601258 0 47.2062251842808 0 0 0 1.5 0 0.4247425010840047 0 + ATV{I|L} 5.2578 + + 88 NaN NaN 118670.4 NaN 12623 3281 15901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15907 68.357 NaN 87193 35 0 13406 0.262 + -1 VLAKDFVDCF 10 45 405.2029341309291 NaN 0 405.16302490234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _VLAKDFVDC(Carbamidomethyl (C))F_ REV__ENSG00000160695|ENST00000621676|VPS11;REV__nc|ENSG00000160695|Q9H270|VPS11 1.7422754331352037 0.33869314273211465 1 {I|L} 1 -1 5.4846 0 0 0.67845 0 0 156.1756236497601 536.1092623346311 692.2848859843912 0 0 0 0 0 0 0 0 0 {I|L} 0.67845 + + 1 + NaN NaN 95975.8 NaN 12624 3281 15901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15909 68.362 NaN 1536100 35 0 254970 0.327 + 9845 HYSPIYLSF 9 80 563.7819170688691 1125.5492812045381 2 563.7821655273438 MULTI HCD FTMS 0 0 0 15908 769647.375 0.9978295367106972 -1 0.0231781005859375 1 Unmodified _HYSPIYLSF_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 88.90359156742426 0.00455469703666567 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F} 9 4 + 86.865 0 0 7.7175 7.7175 93.326 0 0 0 17.914930551903225 72.17207215904928 17.914930551903225 15.268024924119672 0 1.9247425010840047 1.3979400086720375 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}PH;{[TV]|[{I|L}S]}{M(Oxidation (M))|F}YSY{I|L}PH;{[WN]|[YH]}S[{I|L}P]Y{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Y{M(Oxidation (M))|F}SY{I|L}PH;{[WN]|[YH]}[{I|L}P]SY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YS[{I|L}P]YH;{[TV]|[{I|L}S]}{M(Oxidation (M))|F}YS[{I|L}P]YH;{[TV]|[{I|L}S]}Y{M(Oxidation (M))|F}S[{I|L}P]YH 7.7175;6.3611;5.7916;5.3734;5.2567;5.1881;3.312;2.7425;2.2076 -;-;-;+;-;-;-;-;- + 337 NaN NaN 307393.2 NaN 12625 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15910 68.366 NaN 593830 35 0 166610 0.261 + -1 LMWQICSRC 9 64 606.7699751250075 1211.5253973168149 2 607.287841796875 MULTI HCD FTMS 0 0 0 15908 33806.453125 0.41495807866895074 12 -0.33860015869140625 2 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))WQIC(Carbamidomethyl (C))SRC_ REV__ENST00000496169.5_1_7:140156452-140158931:-|nuORF 12.531546534597751 0.2520865569484384 1 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}ENH 6 -1 28.729 0 0 2.3713 0 0 0 422.17177599721515 422.17177599721515 4.796962438796157 0 0 0 0 0 0 0.3494850021680094 0.3807196863200844 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}ENH 2.3713 - 324 + NaN NaN 176328.9 NaN 12626 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15911 68.37 NaN 308590 35 0 37478 0.261 + 31707 VYLDGIVRI 9 62 524.3128316349228 1046.6111103366454 2 524.3132934570312 MULTI HCD FTMS 0 0 0 15908 153512.359375 0.9846892349879304 -1 0.0231781005859375 3 Unmodified _VYLDGIVRI_ ENSG00000196123|ENST00000563902|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1 61.60191391372663 0.015340508911304802 1 VY{I|L}DG{I|L}VR{I|L} 9 0 + 89.078 0 0 8.511 8.511 95.349 0 0 0 69.61358879855484 9.889917747712644 9.889917747712644 20.187592506070345 0 2.5356668758921828 1.6989700043360187 0.7302046884880937 0 + + VY{I|L}DG{I|L}VR{I|L};[YV]{I|L}DG{I|L}VR{I|L};[YV]{I|L}{[RE]|[WV]}V[VG]{I|L};[YV]{I|L}D[R{I|L}][VG]{I|L};[YV]{I|L}{[RE]|[WV]}AA{I|L}{I|L};[{M(Oxidation (M))|F}E][{I|L}T]G{I|L}VR{I|L} 8.511;6.5822;4.9292;4.7609;4.1718;2.0867 +;+;-;-;-;- + 197 + NaN NaN 131341.2 NaN 12627 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15912 68.373 NaN 227540 35 0 20435 0.261 -1 NCQLAWLGGW 10 58 602.7816706421551 NaN 0 602.7970581054688 PEAK HCD FTMS 0 0 0 15908 12852.548828125 0.42012200607036093 -1 0.0231781005859375 4 Carbamidomethyl (C) _NC(Carbamidomethyl (C))QLAWLGGW_ ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 6.723162845929126 0.3344301934401713 1 GK{M(Oxidation (M))|F} 3 -1 13.188 0 0 1.0957 0 0 223.05600378255377 645.2886293692511 868.3446331518048 0 0 0 0 0 0 0 0 0 GK{M(Oxidation (M))|F} 1.0957 - 63 + NaN NaN 122873.2 NaN 12628 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15913 68.377 NaN 443910 35 0 65414 0.261 + 4564 EYLLKAYVL 9 73 556.3233951860898 1110.6322374389795 2 556.32373046875 MULTI HCD FTMS 0 0 0 15908 169854.015625 0.537211482485592 -4 0.10591888427734375 5 Unmodified _EYLLKAYVL_ ENSG00000116406|ENST00000318130|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 111.28704002717404 0.0027322905094575235 1 [YE]{I|L}{I|L}KAYV{I|L} 9 0 + 82.731 0 0 7.449 7.449 96.121 0 0 0 20.03083433768431 14.973024840566467 14.973024840566467 82.73055321134095 0 2.492992819099939 1.3979400086720375 2.75 0 + + [YE]{I|L}{I|L}KAYV{I|L} 7.449 + + 267 NaN NaN 150948.5 NaN 12629 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15914 68.38 NaN 299990 35 0 31508 0.261 + 5179 FFDAELSQM 9 66 552.2397154397356 NaN 0 552.239990234375 PEAK HCD FTMS 0 0 0 15908 78727.703125 0.6402386275902064 -4 0.10591888427734375 6 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 57.72198328787511 0.02966902416627691 1 E{I|L}SQ 4 5 48.708 0 0 4.4181 0 0 480.2006092755875 162.02454526488364 642.2251545404712 0 0 0 0 0 2.3494850021680094 0 0.75 0 + E{I|L}SQ 4.4181 + + 184 NaN NaN 126764.2 NaN 12630 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15915 68.383 NaN 82652 35 0 9095.6 0.261 + 1957 DAINDANLL 9 34 479.74558345433394 NaN 0 479.7461853027344 PEAK HCD FTMS 0 0 0 15908 28760.26171875 0.14439909829834605 9 -0.26987457275390625 7 Unmodified _DAINDANLL_ ENSG00000160752|ENST00000368356|FDPS;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 10.799506525563784 0.2429139407627568 1 {I|L}N 2 7 10.701 0 0 1.1176 0 0 131.09370977262125 596.2303560846311 727.3240658572524 0 0 0 0 0 0 0 0 0.4247425010840047 + {I|L}N 1.1176 + + 4 + NaN NaN 91346.5 NaN 12631 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15916 68.387 NaN 161120 35 0 11268 0.261 + 9993 IEMKRYLGYNL 11 46 467.25029440041436 1398.7290538014431 3 467.58428955078125 MULTI HCD FTMS 0 0 0 15908 21066.955078125 0.43546131616833095 2 -0.063232421875 8 Unmodified _IEMKRYLGYNL_ REV__ENSG00000116478|ENST00000373548|HDAC1;REV__ENSG00000196591|ENST00000519065|HDAC2;REV__ENST00000463172.5_1_1:32757770-32792715:+|nuORF;REV__ENST00000481281.5_1_1:32757770-32793222:+|nuORF;REV__ENST00000520170.1_1_6:114281018-114292096:-|nuORF;REV__ENST00000521233.1_1_6:114279792-114292096:-|nuORF;REV__nc|ENSG00000196591|Q92769-3|HDAC2 7.0370850670814 0.388058401935362 1 T{I|L} 2 -1 23.711 0 0 1.6952 0 0 1166.5869029302744 0 1166.5869029302744 0 10.21652514092061 0 0 0 0 0 0.4247425010840047 0 T{I|L} 1.6952 - 25 NaN NaN 103963.7 NaN 12632 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15917 68.39 NaN 93848 35 0 5669.1 0.261 + 3703 ELTKKWLL 8 48 515.8183938544618 1029.6222347757234 2 515.7902221679688 MULTI HCD FTMS 0 0 0 15908 23669.607421875 0.3616845046139785 6 -0.184417724609375 9 Unmodified _ELTKKWLL_ ENSG00000170775|ENST00000303921|GPR37 11.640296217721598 0.50814828952472 1 {I|L}{I|L} 2 6 22.717 0 0 2.2063 0 0 785.4451771466812 0 785.4451771466812 0 19.952315297631706 0 0 0 0.3252574989159953 0 0 0 + {I|L}{I|L} 2.2063 + + 25 NaN NaN 94691.6 NaN 12633 3282 15908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15919 68.395 NaN 274680 35 0 23840 0.326 + 8874 HNFLSLIVGF 10 82 573.8188073812227 NaN 0 573.8017578125 PEAK HCD FTMS 0 0 0 15918 9413.7392578125 0.4559561506481658 -2 0.05633544921875 1 Unmodified _HNFLSLIVGF_ REV__ENSG00000105929|ENST00000310018|ATP6V0A4 10.823927491677226 0.33092050725491123 1 WANY{M(Oxidation (M))|F}{I|L} 6 -1 35.266 0 0 3.0783 0 0 64.03125944151664 284.17270837955317 348.2039678210698 0 0 0 0 0 0 0 0 0.2614393726401688 WANY{M(Oxidation (M))|F}{I|L} 3.0783 - 368 + NaN NaN 124545.3 NaN 12634 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15920 68.399 NaN 343820 35 0 144430 0.263 + 24471 RYLDSLKAIVF 11 37 442.2587669767779 1323.7544715305337 3 442.2587890625 MULTI HCD FTMS 0 0 0 15918 158876.09375 0.782303294929851 3 -0.08422088623046875 2 Unmodified _RYLDSLKAIVF_ ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN 8.751783647060863 0.3805383164556717 1 V{M(Oxidation (M))|F} 2 9 30.969 0 0 2.3395 0 0 1059.6075731924461 0 1059.6075731924461 0 30.969100130080562 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3395 + + 4 + NaN NaN 124598.2 NaN 12635 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15921 68.403 NaN 188020 35 0 24222 0.261 + -1 EYERALSYM 9 43 589.2616557154873 NaN 0 589.2747802734375 PEAK HCD FTMS 0 0 0 15918 9607.6259765625 0.8162046956076626 1 -0.0300750732421875 3 Oxidation (M) _EYERALSYM(Oxidation (M))_ REV__tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1 10.073929032068715 0.24642998803896465 1 E[PS]VAAY 7 -1 20.706 0 0 1.7599 0 0 165.05462684240484 291.09870325260005 456.1533300950049 0 0 0 0 0 0 0 0.3494850021680094 0 E[PS]VAAY 1.7599 - 52 + NaN NaN 124257.2 NaN 12636 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15922 68.407 NaN 573640 35 0 43544 0.262 + 16517 LTIQSPNPQ 9 87 499.26867628084517 996.5227996284904 2 499.7687683105469 MULTI HCD FTMS 0 0 0 15918 127973.140625 0.6829201363558781 -2 0.05633544921875 4 Unmodified _LTIQSPNPQ_ ENST00000590320.2_1_19:10333357-10333468:-|nuORF 14.838274106304384 0.23215694253501695 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPP{I|L}TPQ 9 6 + 49.497 0 0 4.967 4.967 83.166 0 0 0 3.8958108473691127 3.8958108473691127 3.8958108473691127 3.8958108473691127 0 0 1.3979400086720375 0.6643943297944485 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPP{I|L}TPQ;[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}K;[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L}K;[VS]QQP{I|L}TPQ;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}{[HG]|PP}TPQ;[HV][R{M(Oxidation (M))|F}]{I|L}TPQ;[DV]T[Q{I|L}][TA][H{I|L}];[PA][KA][DG]{I|L}TPQ;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[YT][K{I|L}]Q;[DV]TVV{[QS]|[NT]}[H{I|L}] 4.967;4.5761;3.6466;3.2947;3.1854;2.1948;2.0704;1.7442;1.6758;1.643 -;-;-;-;-;-;-;-;-;- 1071 NaN NaN 159093.9 NaN 12637 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15923 68.41 NaN 164510 35 0 10864 0.261 + 12958 KYIDYLMTW 9 54 624.802091648386 1247.5896303635718 2 624.8016357421875 MULTI HCD FTMS 0 0 0 15918 83515.546875 0.8565568769121809 -2 0.05633544921875 5 Oxidation (M) _KYIDYLM(Oxidation (M))TW_ ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF;nc|ENSG00000114978|Q9H8S9-2|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B 53.40400417844725 0.026808823219830042 1 Y{I|L}{M(Oxidation (M))|F}TW 5 4 68.36 0 0 5.4793 0 0 519.2689649356406 0 519.2689649356406 0 49.2300782528725 0 0 0 2.4247425010840047 0 1.1549471895720984 0 + Y{I|L}{M(Oxidation (M))|F}TW 5.4793 + + 116 + NaN NaN 106503.2 NaN 12638 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15924 68.413 NaN 195430 35 0 12145 0.261 + 13705 KYPLLLDNI 9 60 544.8209217349369 1087.6272905366736 2 544.8204345703125 MULTI HCD FTMS 0 0 0 15918 37767.3828125 0.4746609238706414 -3 0.08283233642578125 6 Unmodified _KYPLLLDNI_ ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12 35.61225514009592 0.08548698421724198 1 [YK][{I|L}P]{I|L}{I|L}DN{I|L} 9 0 + 53.394 0 0 4.9093 4.9093 86.095 0 0 0 7.420299789533402 36.9408341705779 7.420299789533402 9.208187539523749 0 2.2302046884880937 0 0 0 + + [YK][{I|L}P]{I|L}{I|L}DN{I|L};[YK][{I|L}P]{I|L}{I|L}DGG{I|L} 4.9093;4.0626 +;- + 79 NaN NaN 102099.3 NaN 12639 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15925 68.417 NaN 127420 35 0 6839.4 0.261 + 16841 LYEFIFARC 9 57 581.2925566893088 NaN 0 581.2911987304688 PEAK HCD FTMS 0 0 0 15918 21010.255859375 0.46829531423070847 1 -0.0300750732421875 7 Unmodified _LYEFIFARC_ ENST00000377966.3_1_9:36060123-36063798:+|nuORF 14.838274106304384 0.2220448417561729 1 {I|L} 1 8 6.9897 0 0 0.60226 0 0 148.1432665995174 896.3189180963499 1044.4621846958673 0 0 0 0 0 0 0 0 0 + {I|L} 0.60226 + + 16 + NaN NaN 125595.8 NaN 12640 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15926 68.42 NaN 351050 35 0 119570 0.264 + -1 ENMTLRRLIF 10 55 436.90787792535576 1307.7018043762673 3 437.2425842285156 MULTI HCD FTMS 0 0 0 15918 46124.11328125 0.40567971451802654 -3 0.08283233642578125 8 Oxidation (M) _ENM(Oxidation (M))TLRRLIF_ REV__ENSG00000059588|ENST00000040877|TARBP1;REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant 7.477065608646677 0.43572640772348226 1 Y[R{I|L}]{I|L}{M(Oxidation (M))|F} 5 -1 31.026 0 0 2.3725 0 0 597.2905750959 0 597.2905750959 0 29.035984316004217 0 0 0 0.8807196863200843 0 0 0 Y[R{I|L}]{I|L}{M(Oxidation (M))|F} 2.3725 - 12 NaN NaN 134438.9 NaN 12641 3283 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15928 68.425 NaN 1120400 35 0 339120 0.327 + 24608 RYLPTGSFPF 10 66 592.8085720950354 1183.6025912568707 2 592.80908203125 MULTI HCD FTMS 0 0 0 15927 598146.375 0.10668244306504628 15 -0.42247772216796875 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 71.70789743142352 0.01556163018108538 1 [YR]{I|L}[TP]GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 80.495 0 0 6.8008 6.8008 93.51 0 0 0 4.259687322722812 69.52561882712928 4.259687322722812 33.112431371158735 0 2.579689690656103 0 1.2302046884880937 0 + + [YR]{I|L}[TP]GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}[TP][YQ]P{M(Oxidation (M))|F};[YR][{M(Oxidation (M))|F}V]{[DA]|[EG]}{I|L}GP{M(Oxidation (M))|F};[YV]G{I|L}W[R{I|L}]{[YD]|[{M(Oxidation (M))|F}M]};[YR]{I|L}{[DA]|[EG]}[VG]{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YV]G{I|L}{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{M(Oxidation (M))|F};[YR]{I|L}[TP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}WD{[VA]|[{I|L}G]}[YV] 6.8008;4.0032;3.9805;2.8178;2.3116;2.0003;1.656;1.2561;0.38486 +;-;-;-;-;-;-;-;- + 281 NaN NaN 264013.8 NaN 12642 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15929 68.429 NaN 775540 35 0 88249 0.261 + 15393 LPDGTSLTQTF 11 82 590.298270082073 1178.581987230946 2 590.2986450195312 MULTI HCD FTMS 0 0 0 15927 368589.71875 0.5124098374728565 4 -0.121185302734375 2 Unmodified _LPDGTSLTQTF_ ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1 124.953037156858 0.013497877353096458 1 TQAS{I|L}TQT{M(Oxidation (M))|F} 9 5 80.74 0 0 6.8506 0 0 183.09003926332883 0 183.09003926332883 0 38.63387729116033 0 0 0 2.6989700043360187 0 1.8001648626366045 0.2742275032520141 TQAS{I|L}TQT{M(Oxidation (M))|F} 6.8506 - 3034 + NaN NaN 197514.7 NaN 12643 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15930 68.433 NaN 991030 35 0 306760 0.261 + 1382 AYPTVKFYF 9 89 568.2946532158254 1134.5747534984507 2 568.2947387695312 MULTI HCD FTMS 0 0 0 15927 296935.90625 0.6670949942192279 -1 0.0300750732421875 3 Unmodified _AYPTVKFYF_ ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10 69.10491478415734 0.009377850133389008 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTVK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 9 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} + + 48.554 23.724 10.134 4.2794 4.2794 60.451 0 0 0 0 37.853670747481516 0 0 0 2.2614393726401687 0 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTVK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 4.2794 + + 411 + NaN NaN 222768.5 NaN 12644 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15931 68.437 NaN 570550 35 0 53773 0.261 + 7680 FYLEGGFSKF 10 87 597.7950511296735 1193.575549326147 2 597.7949829101562 MULTI HCD FTMS 0 0 0 15927 272099.59375 0.06546839052181826 21 -0.5496826171875 4 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 91.08480475639789 0.0009191514194420671 1 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 75.578 0 0 6.3321 6.3321 84.252 0 0 0 10.999161495794425 1.3375789050216014 1.3375789050216014 1.3375789050216014 0 3.004432191740108 0 1.0941876774005248 0.2742275032520141 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[DG]SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EN[KA]Y{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 6.3321;6.22;5.5606;5.4485;5.2967;5.0016;4.5748;4.5252;4.4012;4.2301 -;-;+;+;-;-;-;-;-;- + 1583 + NaN NaN 163724 NaN 12645 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15932 68.44 NaN 467100 35 0 53669 0.261 + 13233 KYMDIEFDF 9 66 612.2680883328802 1222.5216237325603 2 612.2682495117188 MULTI HCD FTMS 0 0 0 15927 259370.28125 0.09947266781727876 35 -0.9381027221679688 5 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 41.95555342248728 0.056367691549927025 1 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 58.933 0 0 4.8206 0 0 262.0957203595719 0 262.0957203595719 0 53.44798238870226 0 0 0 1.5 0 0.2742275032520141 0 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8206 - 286 NaN NaN 155234.4 NaN 12646 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15933 68.443 NaN 771130 35 0 53379 0.261 + 22956 QYVYWLHML 9 97 634.8103092675826 1267.6060656019652 2 634.8103637695312 MULTI HCD FTMS 0 0 0 15927 344989.375 0.9849822166868799 -1 0.0300750732421875 6 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 129.2004930540761 0.0006534604433583781 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L} 10 8 + 79.843 0 0 6.2987 6.2987 87.42 0 0 0 11.835528354938617 12.397868585481078 11.835528354938617 8.762874945799766 0 1.416386562212267 1.3979400086720375 0.805462187404089 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVYC(Carbamidomethyl (C)){I|L};[YQ]VYW{I|L}H{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYW{I|L}H{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}VYC(Carbamidomethyl (C)){I|L} 6.2987;5.6074;5.5757;5.5234;5.365;5.3071;5.0504;4.9752;4.8845;4.8321 -;-;-;-;+;-;-;-;-;- + 1678 NaN NaN 199270.6 NaN 12647 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15934 68.447 NaN 982580 35 0 163590 0.261 + 25804 SLPEDFYHF 9 77 577.7613398827461 1153.5081268322922 2 578.2774047851562 MULTI HCD FTMS 0 0 0 15927 102075.765625 0.7065070664235814 2 -0.05414581298828125 7 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 34.10243960390752 0.09241788333544565 1 {[TV]|[{I|L}S]}[DP]DQY{I|L}G 9 4 42.999 0 0 3.7276 0 0 0 162.0560701959594 162.0560701959594 -1.0796346782314714 0 -1.0796346782314714 0 0 0.7302046884880937 1.6989700043360187 0 0 {[TV]|[{I|L}S]}[DP]DQY{I|L}G 3.7276 - 486 + NaN NaN 235080.6 NaN 12648 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15935 68.45 NaN 368000 35 0 38872 0.261 + 13863 KYPVDLYYL 9 64 587.3131186192064 1172.6116843052127 2 587.3132934570312 MULTI HCD FTMS 0 0 0 15927 173545.96875 0.6959861746985178 -1 0.0300750732421875 8 Unmodified _KYPVDLYYL_ ENSG00000105855|ENST00000222573|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF;nc|ENSG00000105855|P26012-2|ITGB8 29.84058131909904 0.11198220037953927 1 [YK][VP]D{I|L}YY{I|L} 9 0 + 53.606 0 0 4.5715 4.5715 86.595 0 0 0 3.6574248437336365 34.14197490877392 3.6574248437336365 10.268024924119672 0 1.774227503252014 0 0 0 + + [YK][VP]D{I|L}YY{I|L};[{M(Oxidation (M))|F}V][Q{I|L}]D{I|L}YY{I|L};[YK][VP]D[RH]MK;[{M(Oxidation (M))|F}V][Q{I|L}]D[RH]MK 4.5715;3.6958;2.0968;1.2211 +;-;-;- + 149 NaN NaN 139241.1 NaN 12649 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15936 68.453 NaN 385650 35 0 23630 0.261 + 27190 SYNNFFRMF 9 77 621.2738121112648 1240.5330712893294 2 621.274169921875 MULTI HCD FTMS 0 0 0 15927 163282.421875 0.03230456810147298 86 -2.3531265258789062 9 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 110.6747026088012 0.0028322563155251486 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 95.143 0 0 7.6695 7.6695 90.94 0 0 0 74.17403451429223 10.642492736872597 10.642492736872597 9.208187539523749 0 2.004432191740108 2 0 0.3494850021680094 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNNC(Carbamidomethyl (C))[TP]R{[ET]|[MV]};SYN{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[RE]|[WV]}G{[QD]|[EN]|[WG]|[KD]|[RS]};SYGGNC(Carbamidomethyl (C))[TP]R{[ET]|[MV]};SYNGGC(Carbamidomethyl (C))[TP]R{[ET]|[MV]};SYNN[CG][TP]R{[ET]|[MV]};SYNN[HA][RH]{[QD]|[EN]|[WG]|[KD]|[RS]} 7.6695;6.9273;6.9273;6.1885;4.6239;3.9469;3.8852;3.8852;3.8852;3.8287 +;-;-;-;-;-;-;-;-;- + 1188 + NaN NaN 151080.3 NaN 12650 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15937 68.457 NaN 229820 35 0 19535 0.261 + 21553 PYLPNQIQL 9 72 543.3031228870129 1084.5916928408258 2 543.3030395507812 MULTI HCD FTMS 0 0 0 15927 81234.7421875 0.048790938969540024 30 -0.8047561645507812 10 Unmodified _PYLPNQIQL_ REV__ENSG00000170075|ENST00000367282|GPR37L1 20.453626601364224 0.18364154288633264 1 M{I|L}{I|L}Q{I|L} 5 -1 40.815 0 0 3.7632 0 0 468.23790175605626 0 468.23790175605626 0 31.863044005075736 0 0 0 0.6747425010840047 0 0 0 M{I|L}{I|L}Q{I|L} 3.7632 - 65 NaN NaN 108270.5 NaN 12651 3284 15927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15939 68.462 NaN 3757200 35 0 538940 0.326 + 31887 VYNIHLAVNF 10 126 595.3218169221777 1188.6290809111554 2 595.3220825195312 MULTI HCD FTMS 0 0 0 15938 2889825.5 0.9906027599036692 -1 0.03676605224609375 1 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 134.295615338601 1.1116339284287773E-05 1 [YV]N{I|L}H{I|L}AVN{M(Oxidation (M))|F} 10 0 + 92.828 0 0 7.8096 7.8096 90.462 0 0 0 11.10924374808178 11.505149978319906 11.10924374808178 9.164539485499262 0 2.992992819099939 1.5228787452803376 0 1.0044321917401078 + + [YV]N{I|L}H{I|L}AVN{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}AVGG{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}ANV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}AVN{M(Oxidation (M))|F};[YV]GG{I|L}H{I|L}AVN{M(Oxidation (M))|F};{[NV]|[RG]}Y{I|L}H{I|L}AVN{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}G{I|L}N{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}AGGV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}AVGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}ANV{M(Oxidation (M))|F} 7.8096;7.0386;6.9998;6.875;6.5509;6.5296;6.3292;6.2288;6.104;6.0651 +;-;-;-;-;-;-;-;-;- + 9913 NaN NaN 611688 NaN 12652 3285 15938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15940 68.466 NaN 614870 35 0 48557 0.261 + 32248 VYTVVDEMF 9 81 559.7575706348756 1117.5005883365511 2 559.758056640625 MULTI HCD FTMS 0 0 0 15938 363500.4375 1 0 0 2 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 139.54400939418784 2.61670173137287E-05 1 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 89.702 0 0 8.027 8.027 92.69 0 0 0 4.986512420283233 4.986512420283233 4.986512420283233 10.805300040193018 0 2.8494850021680094 1.6989700043360187 2.0114393726401687 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]VT[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[{I|L}T]VD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[WY]{I|L} 8.027;7.0601;4.3112;1.5287 +;-;-;- + 482 NaN NaN 173169.7 NaN 12653 3285 15938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15941 68.471 NaN 604250 35 0 121460 0.261 + 9287 HPNIVSLQDVL 11 72 617.8433588378276 1233.6721647424552 2 617.8427734375 MULTI HCD FTMS 0 0 0 15938 176887.515625 0.4849692447583974 5 -0.143646240234375 3 Unmodified _HPNIVSLQDVL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 21.799462835604743 0.267142977351036 1 [DV]NR{M(Oxidation (M))|F}AV{[DS]|[MA]|[CV]|TT}V{I|L} 11 7 + 54.658 0 0 4.4305 4.4305 84.475 0 0 0 6.963276288384073 -2.174839442139067 -2.174839442139067 9.128498242810998 0 0 2 0 0 [DV]NR{M(Oxidation (M))|F}AV{[DS]|[MA]|[CV]|TT}V{I|L};[DV]GGR{M(Oxidation (M))|F}AV{[DS]|[MA]|[CV]|TT}V{I|L};[VS]RW{[CA]|SS}V{[DS]|[MA]|[CV]|TT}V{I|L} 4.4305;3.6906;1.1738 -;-;- 1056 NaN NaN 172647 NaN 12654 3285 15938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15942 68.474 NaN 302760 35 0 39876 0.262 + 31504 VYGDFQEAF 9 67 538.241195040947 1074.467837148694 2 538.2403564453125 MULTI HCD FTMS 0 0 0 15938 122207.4453125 1 0 0 4 Unmodified _VYGDFQEAF_ ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A 49.55428908609986 0.03219431099695407 1 S{M(Oxidation (M))|F}QEA{M(Oxidation (M))|F} 6 4 67.058 0 0 6.241 0 0 347.1474781720719 0 347.1474781720719 0 57.593728280886936 0 0 0 2.1861818737241734 0 0.3252574989159953 0.3807196863200844 S{M(Oxidation (M))|F}QEA{M(Oxidation (M))|F} 6.241 - 222 NaN NaN 129261.1 NaN 12655 3285 15938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15944 68.479 NaN 1055800 35 0 156630 0.326 + 1156 AYLESFYKF 9 87 584.289645907993 1166.5647388827858 2 584.2899169921875 MULTI HCD FTMS 0 0 0 15943 716897.5625 0.03888254170111183 28 -0.7506103515625 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 149.91393105778798 8.917243180786556E-06 1 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 124.61 0 0 10.682 10.682 92.978 0 0 0 67.94653786155799 14.973024840566467 14.973024840566467 8.424778212679485 0 3.1989700043360187 2 0.6989700043360187 0.3054621874040891 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYK{M(Oxidation (M))|F}S{M(Oxidation (M))|F};AY{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};AY{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]} 10.682;9.9594;8.9546;8.95;8.7796;7.7748;7.4073;7.3804;6.6519;6.5251 +;+;-;-;-;-;-;-;-;- + 2689 + NaN NaN 246649.7 NaN 12656 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15945 68.483 NaN 1364200 35 0 263290 0.261 + 12917 KYGLGFQII 9 105 519.8019092773395 1037.589265621479 2 519.8029174804688 MULTI HCD FTMS 0 0 0 15943 260150.171875 0.43469235698470077 4 -0.1262664794921875 2 Unmodified _KYGLGFQII_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 41.8396318013385 0.056899836730939755 1 YQ{I|L}{I|L} 4 5 39.557 0 0 3.8124 0 0 502.29890639472814 0 502.29890639472814 0 8.38265863430463 0 0 0 0.7742275032520141 0 0 0.28872548999643577 YQ{I|L}{I|L} 3.8124 - 1063 NaN NaN 286566.6 NaN 12657 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15946 68.488 NaN 488260 35 0 30198 0.261 + 6340 FPFYYEIKM 9 77 627.2987212994602 1252.5828896657204 2 627.299072265625 MULTI HCD FTMS 0 0 0 15943 245099.125 0.2915886963769068 23 -0.6170806884765625 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 81.481 0 0 6.5051 6.5051 83.951 0 0 0 0.056584229283842546 0.056584229283842546 0.056584229283842546 0.056584229283842546 0 2.809894379144197 0 0.6549471895720984 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYT{I|L}[VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE 6.5051;6.5005;6.4134;5.8121;5.7739;5.195;5.1402;4.9938;4.5942;4.5555 +;-;+;-;-;-;-;-;-;- + 1974 + NaN NaN 149696.8 NaN 12658 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15947 68.492 NaN 470040 35 0 38530 0.262 + 13114 KYLGLLENL 9 83 531.8130218771535 1061.6114908211068 2 531.8133544921875 MULTI HCD FTMS 0 0 0 15943 154342.6875 0.48212781189876985 3 -0.0933380126953125 4 Unmodified _KYLGLLENL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 1 [YK]{I|L}{[VA]|[{I|L}G]}{I|L}EN{I|L} 9 0 + 52.686 0 0 4.9629 4.9629 83.934 0 0 0 4.762036441594191 27.037881139012043 4.762036441594191 5.740764973140742 0 2.1861818737241734 0 0 0.2742275032520141 + + [YK]{I|L}{[VA]|[{I|L}G]}{I|L}EN{I|L};{I|L}[YK]{[VA]|[{I|L}G]}{I|L}EN{I|L};[YK]{I|L}{[VA]|[{I|L}G]}{I|L}EGG{I|L};[YK]{I|L}{[CP]|[EA]}[{I|L}V]N{I|L} 4.9629;4.4221;4.0955;1.2934 +;-;-;- + 400 NaN NaN 148173.4 NaN 12659 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15948 68.495 NaN 266190 35 0 24696 0.261 + 27123 SYMGHFDLL 9 87 541.7524296466896 1081.4903063601791 2 541.7520751953125 MULTI HCD FTMS 0 0 0 15943 88997.8359375 0.01794742525572678 52 -1.442718505859375 5 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 57.47134341890925 0.0211188941628804 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 8 31.242 0 0 2.8888 0 0 690.2755064107636 0 690.2755064107636 0 6.865385621430722 0 0 0 1.1549471895720984 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.8888 - 329 + NaN NaN 124469.2 NaN 12660 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15949 68.498 NaN 273910 35 0 22472 0.261 -1 SFSLKESIM 9 71 529.2637606201953 NaN 0 529.2785034179688 PEAK HCD FTMS 0 0 0 15943 17858.8515625 0.5242161237186312 1 -0.0374298095703125 6 Oxidation (M) _SFSLKESIM(Oxidation (M))_ ENSG00000149311|ENST00000675843|ATM 25.399314129420986 0.1511568710901456 1 {I|L}SGM{I|L}R 6 -1 30.438 0 0 2.881 0 0 234.06930028080097 162.05605493717033 396.12535521797133 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}SGM{I|L}R 2.881 - 266 + NaN NaN 118261.8 NaN 12661 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15950 68.502 NaN 214780 35 0 43087 0.261 + 3520 EIFHNLCCRF 10 53 641.2989295999437 1280.5833062666873 2 642.3168334960938 MULTI HCD FTMS 0 0 0 15943 21414.134765625 0.988135207515354 2 -0.06703948974609375 7 Unmodified _EIFHNLCCRF_ REV__ENSG00000218819|ENST00000405799|TDRD15 6.2057823575117 0.44245551207394906 1 E{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 1.9282 0 0 0 888.3734835260374 888.3734835260374 13.01029995663981 0 0 0 0 0 0 0 0 E{I|L}{M(Oxidation (M))|F} 1.9282 + + 27 + NaN NaN 105330.6 NaN 12662 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15951 68.505 NaN 231760 35 0 38201 0.264 -1 IYNENKEMLFK 11 45 482.2435640909712 1443.7088628731135 3 482.24322509765625 MULTI HCD FTMS 0 0 0 15943 57641.8046875 0.7949506689225363 1 -0.0374298095703125 8 Oxidation (M) _IYNENKEM(Oxidation (M))LFK_ tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1 7.846045518447754 0.3845105762037768 1 {I|L}Y[HV]{M(Oxidation (M))|F}YN 7 -1 56.33 0 0 3.9018 0 0 0 504.23627649478755 504.23627649478755 49.34070099586343 0 0 0 0 0.4247425010840047 2 0 0.4247425010840047 {I|L}Y[HV]{M(Oxidation (M))|F}YN 3.9018 - 52 + NaN NaN 114902.4 NaN 12663 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15952 68.508 NaN 211830 35 0 14688 0.261 -1 SYMGHFDLL 9 63 549.7498697382105 1097.4851865432208 2 549.7498168945312 MULTI HCD FTMS 0 0 0 15943 27611.193359375 0.3386431928481428 24 -0.6365432739257812 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 16.942295170755138 0.21397866736869717 1 [YV]KVP 5 -1 34.001 0 0 3.0981 0 0 0 508.11138218214586 508.11138218214586 14.79303657420887 0 0 0 0 0 1.6989700043360187 0 0 [YV]KVP 3.0981 - 140 NaN NaN 110243.3 NaN 12664 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15953 68.512 NaN 171750 35 0 41916 0.261 + 21885 QDAPVPKLI 9 51 490.7923563270418 979.5701597208836 2 490.7920837402344 MULTI HCD FTMS 0 0 0 15943 58824.6015625 0.11642022754544495 15 -0.4007110595703125 10 Unmodified _QDAPVPKLI_ REV__ENSG00000074657|ENST00000591808|ZNF532 5.731851221503515 0.3075653528928475 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6511 0 0 735.3926227750309 0 735.3926227750309 0 22.870156338638594 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6511 + + 8 NaN NaN 104498 NaN 12665 3286 15943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15955 68.517 NaN 1622700 35 0 257150 0.327 + 9846 HYSPIYLSF 9 94 563.7819170688691 1125.5492812045381 2 563.7821044921875 MULTI HCD FTMS 0 0 0 15954 418197.09375 0.5421825966863364 4 -0.1150665283203125 1 Unmodified _HYSPIYLSF_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 81.61307344734483 0.005330412723537057 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F} 9 4 + 67.889 0 0 6.0317 6.0317 86.983 0 0 0 9.040295790118549 22.136153375280188 9.040295790118549 8.82576888900239 0 1.6549471895720984 1.3010299956639813 0.7059771852360797 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[HK]RS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YPHY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][QP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][PA]G{M(Oxidation (M))|F};{[WN]|[YH]}[{I|L}P]SY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[QP][VP]S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[PA][QP]Y{I|L}S{M(Oxidation (M))|F};{[WN]|[YH]}S[{I|L}P]Y{I|L}S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}S[VP][QP]{M(Oxidation (M))|F} 6.0317;5.2475;4.4815;4.4775;4.3109;4.239;4.1165;4.0419;3.9715;3.7455 -;-;-;-;-;-;-;-;+;- + 2025 NaN NaN 329707.8 NaN 12666 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15956 68.521 NaN 413060 35 0 112420 0.261 + 10065 IFFENHPYF 9 67 607.287363119328 1212.560173305456 2 607.28759765625 MULTI HCD FTMS 0 0 0 15954 282120.15625 0.1284616659140213 20 -0.51715087890625 2 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 78.7280429016045 0.006263961847259105 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F} 9 0 + 84.575 0 0 6.9749 6.9749 91.655 0 0 0 65.99153133413289 9.009461452434238 9.009461452434238 13.455612550363796 0 2.048455006504028 1.3979400086720375 0 0.4247425010840047 + + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGGHPY{M(Oxidation (M))|F} 6.9749;5.8652 +;- + 152 + NaN NaN 151422.3 NaN 12667 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15957 68.525 NaN 226200 35 0 22201 0.263 + 9592 HSFISATVL 9 56 487.76888219008293 973.5232114469659 2 487.7687683105469 MULTI HCD FTMS 0 0 0 15954 76103.8203125 0.5436454967274528 4 -0.1150665283203125 3 Unmodified _HSFISATVL_ ENST00000295133.9_1_2:73483541-73483895:-|nuORF 32.30548876998284 0.10066689432505688 1 ATV{I|L} 4 5 54.68 0 0 5.6168 0 0 571.27565334331 0 571.27565334331 0 42.461987796517704 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + ATV{I|L} 5.6168 + + 80 NaN NaN 112669.5 NaN 12668 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15958 68.528 NaN 263830 35 0 26445 0.261 -1 SPMDDGFVSL 10 73 542.2369592721791 1082.459365611158 2 542.23681640625 MULTI HCD FTMS 0 0 0 15954 56478.109375 0.5701764327903122 5 -0.13802337646484375 4 Oxidation (M) _SPM(Oxidation (M))DDGFVSL_ ENSG00000168522|ENST00000302279|FNTA;ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA 39.94969957227396 0.1458432724694501 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}C(Carbamidomethyl (C))VS{I|L} 9 -1 + 51.365 0 0 4.7452 4.7452 85.816 0 0 0 3.063113202512895 28.443350238481028 3.063113202512895 9.208187539523749 0 1 1.0969100130080565 0.6505149978319906 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}C(Carbamidomethyl (C))VS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}[CG]VS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}C(Carbamidomethyl (C))W{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}[CG]W{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}VV{M(Oxidation (M))|F}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}[MT]N{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ET]|[MV]}[MT]{I|L}N 4.7452;3.8945;3.3844;2.5287;1.6509;1.6301;1.4882 -;-;-;-;-;-;- 343 NaN NaN 132198.4 NaN 12669 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15959 68.531 NaN 188070 35 0 13303 0.261 + 31694 VYKVPPFTF 9 65 549.3049190832124 1096.5952852332248 2 549.304443359375 MULTI HCD FTMS 0 0 0 15954 49718.86328125 0.5169809243896812 4 -0.1150665283203125 5 Unmodified _VYKVPPFTF_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 72.96794272382148 0.008127836904478181 1 VYKVP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F} 9 0 + 72.703 0 0 6.6299 6.6299 86.656 0 0 0 5.254537344402905 5.254537344402905 5.254537344402905 5.254537344402905 0 2.4247425010840047 2 0.5629529932484498 0.3494850021680094 + + VYKVP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F};[YV][{M(Oxidation (M))|F}T]PVKP{M(Oxidation (M))|F};[YV]KVP[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F};VYKVP[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F};VY[{M(Oxidation (M))|F}T]PVKP{M(Oxidation (M))|F};[YV]KVP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F} 6.6299;6.1507;6.1475;5.9978;5.9945;5.7445 +;-;-;-;-;+ + 215 + NaN NaN 116061 NaN 12670 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15960 68.535 NaN 122830 35 0 8995 0.261 + 26703 SYATLLHVL 9 57 508.7924084663876 1015.5702639995752 2 508.79290771484375 MULTI HCD FTMS 0 0 0 15954 31159.744140625 0.6511454540393551 1 -0.02960968017578125 6 Unmodified _SYATLLHVL_ ENSG00000183840|ENST00000329321|GPR39 88.90359156742426 0.00455469703666567 1 {[{M(Oxidation (M))|F}C]|[YS]}AT{I|L}{I|L}HV{I|L} 9 0 + 60.358 0 0 5.9433 5.9433 92.983 0 0 0 5.6424927368725974 57.25949072601743 5.6424927368725974 60.3584345174594 0 2.4247425010840047 0 0.7059771852360797 0 + + {[{M(Oxidation (M))|F}C]|[YS]}AT{I|L}{I|L}HV{I|L} 5.9433 + + 85 NaN NaN 99648.3 NaN 12671 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15961 68.538 NaN 131130 35 0 9025.5 0.261 -1 DPNLEFVAM 9 55 526.242108478168 1050.469664023136 2 526.24267578125 MULTI HCD FTMS 0 0 0 15954 7788.20458984375 0.05023421131612712 11 -0.29482269287109375 7 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 22.736283301280096 0.1639198954644489 1 {M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 4 -1 46.67 0 0 4.4428 0 0 568.2499202260641 0 568.2499202260641 0 36.212600430434705 0 0 0 1.9247425010840047 0 0 0 {M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 4.4428 + + 40 + NaN NaN 109105 NaN 12672 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15962 68.541 NaN 97884 35 0 11290 0.261 + 19522 NRSSCQKI 8 44 468.23958017531254 934.4646074174251 2 468.2395324707031 MULTI HCD FTMS 0 0 0 15954 18900.978515625 0.33191713586475186 7 -0.1837921142578125 8 Unmodified _NRSSCQKI_ ENSG00000154309|ENST00000675850|DISP1 3.944395688203298 0.5361403129012058 1 G[QP] 3 7 10.458 0 0 1.1191 0 0 634.3210083617577 0 634.3210083617577 0 10.45757490560675 0 0 0 0 0 0 0 G[QP] 1.1191 - 1 NaN NaN 113842 NaN 12673 3287 15954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15964 68.546 NaN 381510 35 0 59365 0.327 + 4565 EYLLKAYVL 9 60 556.3233951860898 1110.6322374389795 2 556.3237915039062 MULTI HCD FTMS 0 0 0 15963 194946.40625 0.6165732821884881 2 -0.05922698974609375 1 Unmodified _EYLLKAYVL_ ENSG00000116406|ENST00000318130|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 111.28704002717404 0.0027322905094575235 1 [YE]{I|L}{I|L}KAYV{I|L} 9 0 + 89.892 0 0 8.0938 8.0938 96.381 0 0 0 22.289784572998173 14.973024840566467 14.973024840566467 50.394265106388474 0 2.579689690656103 1.3979400086720375 2.805462187404089 0 + + [YE]{I|L}{I|L}KAYV{I|L};[YV]AVV[VS]YV{I|L};[YV][{I|L}T][Q{I|L}]YV{I|L};[YT][{I|L}V][Q{I|L}]YV{I|L} 8.0938;3.5564;3.0998;2.0156 +;-;-;- + 575 NaN NaN 148577.9 NaN 12674 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15965 68.551 NaN 421400 35 0 43192 0.261 + 25445 SETDTSLIRG 10 80 539.7724899998566 1077.530427066513 2 539.7725219726562 MULTI HCD FTMS 0 0 0 15963 80442.5390625 0.8099385410314837 1 -0.02629852294921875 2 Unmodified _SETDTSLIRG_ ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A 16.149105407346934 0.3600587335443843 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}G[C(Carbamidomethyl (C))S]{I|L}T 8 7 47.44 0 0 4.4027 0 0 0 215.10415064029533 215.10415064029533 17.796225351387204 0 0 0 0 0.8494850021680094 2 0.3054621874040891 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}G[C(Carbamidomethyl (C))S]{I|L}T 4.4027 - 454 + NaN NaN 147465.6 NaN 12675 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15966 68.554 NaN 369200 35 0 27418 0.261 + 18315 MPEQWARLL 9 91 572.3022873862203 1142.5900218392405 2 572.30224609375 MULTI HCD FTMS 0 0 0 15963 116141.8515625 1 0 0 3 Unmodified _MPEQWARLL_ ENSG00000149269|ENST00000356341|PAK1;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;nc|ENSG00000149269|Q13153-2|PAK1;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant 45.739877483867886 0.03899552410870734 1 MPEQWAR{I|L}{I|L} 9 0 + 56.493 0 0 4.9443 4.9443 86.162 0 0 0 37.45211119840994 3.65279269351241 3.65279269351241 9.208187539523749 0 1.8129529932484498 0 0.25 0 + + MPEQWAR{I|L}{I|L};MPE[AG]WAR{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}EQAWR{I|L}{I|L};[EP]MQAWR{I|L}{I|L};[YG]HQAW[VG]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}EQADAR{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}E[AG]AWR{I|L}{I|L};[EP]M[AG]AWR{I|L}{I|L};[YG]H[AG]AW[VG]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}E[AG]ADAR{I|L}{I|L} 4.9443;4.1384;2.7982;2.6415;2.5717;2.3367;1.9923;1.8356;1.7696;1.5347 +;-;-;-;-;-;-;-;-;- + 579 + NaN NaN 144327 NaN 12676 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15967 68.558 NaN 331230 35 0 33053 0.261 + 1413 AYQLMTDVF 9 59 552.2575025749194 1102.5004522166387 2 552.2396850585938 MULTI HCD FTMS 0 0 0 15963 41210.33984375 0.15978640655061674 -5 0.1512603759765625 4 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 71.92227651296345 0.008466197542043549 1 {I|L}{M(Oxidation (M))|F}TDV{M(Oxidation (M))|F} 6 3 61.82 0 0 5.6073 0 0 362.15909587073867 0 362.15909587073867 0 39.01699643418702 0 0 0 2.110924374808178 0 1.274227503252014 0 + {I|L}{M(Oxidation (M))|F}TDV{M(Oxidation (M))|F} 5.6073 + + 296 + NaN NaN 129669.9 NaN 12677 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15968 68.561 NaN 90175 35 0 29176 0.262 + 3584 EKILRKEYVF 10 26 442.2587669767779 1323.7544715305337 3 442.2588195800781 MULTI HCD FTMS 0 0 0 15963 15569.7294921875 0.07666509413348889 8 -0.21282196044921875 5 Unmodified _EKILRKEYVF_ ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D 1.4551175022131473 0.4676015363898197 1 V{M(Oxidation (M))|F} 2 8 25.969 0 0 1.9618 0 0 1059.6098616915976 0 1059.6098616915976 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 1.9618 + + 2 NaN NaN 99427.1 NaN 12678 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15969 68.564 NaN 175340 35 0 10546 0.261 + 31708 VYLDGIVRI 9 68 524.3128316349228 1046.6111103366454 2 524.31396484375 MULTI HCD FTMS 0 0 0 15963 32817.32421875 0.21050334976855553 5 -0.1412200927734375 6 Unmodified _VYLDGIVRI_ ENSG00000196123|ENST00000563902|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1 32.78568957990786 0.09846250359632436 1 [YV]{I|L}D{[VA]|[{I|L}G]}VR{I|L} 9 0 + 42.871 0 0 4.0961 4.0961 89.394 0 0 0 23.40674667758151 7.208859094697573 7.208859094697573 42.870696829342165 0 1.6549471895720984 1.6989700043360187 0 0 + + [YV]{I|L}D{[VA]|[{I|L}G]}VR{I|L} 4.0961 + + 84 + NaN NaN 102748.4 NaN 12679 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15970 68.567 NaN 149170 35 0 17937 0.261 + 18653 MYHLFSCIVS 10 42 600.2842547781815 1198.553956623163 2 600.3023071289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _MYHLFSCIVS_ REV__ENSG00000102302|ENST00000375135|FGD1 3.944395688203298 0.4544253912184634 1 E 1 -1 4.6041 0 0 0.38414 0 0 166.01375333336165 900.4643776244044 1066.478130957766 0 0 0 0 0 0 0 0 0 E 0.38414 - 10 + NaN NaN 108731 NaN 12680 3288 15963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15972 68.572 NaN 1597000 35 0 391120 0.327 + 31542 VYGPLPQSF 9 82 504.2636027595603 1006.5126525859206 2 504.263916015625 MULTI HCD FTMS 0 0 0 15971 569515.9375 0.7066311272382004 -4 0.1107177734375 1 Unmodified _VYGPLPQSF_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 88.95385435242217 0.004553379958619559 1 [YV]G[{I|L}P]PQS{M(Oxidation (M))|F} 9 0 + 70.301 0 0 6.9846 6.9846 85.226 0 0 0 5.330918867322296 5.330918867322296 5.330918867322296 0.8226467981605623 0 2.4559771852360797 1.6989700043360187 0.805462187404089 0.2614393726401688 + + [YV]G[{I|L}P]PQS{M(Oxidation (M))|F};[YV]APVPQS{M(Oxidation (M))|F};[YV]G[{I|L}P]P[AG]S{M(Oxidation (M))|F};[YV]APVP[AG]S{M(Oxidation (M))|F};[YV]{[QS]|[NT]}[{I|L}P]GP{M(Oxidation (M))|F};[YV]G{[SA]|[TG]}VPAP{M(Oxidation (M))|F};[YV]{[QS]|[NT]}VPAP{M(Oxidation (M))|F};[YV]G[{I|L}P]{[QS]|[NT]}P{M(Oxidation (M))|F};[YV]APV{[SA]|[TG]}GP{M(Oxidation (M))|F};[YV]APV{[QS]|[NT]}P{M(Oxidation (M))|F} 6.9846;6.9028;5.81;5.7282;4.9747;4.966;4.8929;4.8207;4.812;4.739 +;-;-;-;-;-;-;-;-;- + 986 + NaN NaN 329856.2 NaN 12681 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15973 68.577 NaN 755200 35 0 214890 0.261 + 24609 RYLPTGSFPF 10 52 592.8085720950354 1183.6025912568707 2 592.808837890625 MULTI HCD FTMS 0 0 0 15971 357516.75 0.06376492765115459 20 -0.52374267578125 2 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 59.368380827593164 0.04371880213842136 1 [YR]{I|L}TPGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 2 + 67.657 0 0 5.7162 5.7162 88.196 0 0 0 4.259687322722812 58.192672072328904 4.259687322722812 9.247425010840047 0 1.9291746928241125 0 1.1989700043360187 0 [YR]{I|L}TPGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR][TP]{I|L}GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}TP[YQ]P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PT{[VA]|[{I|L}G]}P{M(Oxidation (M))|F};[YR][TP]{I|L}[YQ]P{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}SGP[RP][YV];[YR]{I|L}TP{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YV][YQ]P[RP][YV] 5.7162;4.9349;3.4346;3.1167;2.6533;1.0799;0.71027;0.091055 -;-;-;-;-;-;-;- 204 NaN NaN 217297.9 NaN 12682 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15974 68.58 NaN 1931800 35 0 215120 0.261 + 11959 KFNPVSFTW 9 101 563.2902382284798 1124.5659235237595 2 563.2903442382812 MULTI HCD FTMS 0 0 0 15971 640556.5625 0.3587111046493436 -4 0.1107177734375 3 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 122.17920374332846 0.0010792739174387011 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW 9 0 + 81.15 0 0 7.2161 7.2161 85.571 0 0 0 0.5815970334744236 5.796896906561031 0.5815970334744236 0.5815970334744236 0 2.6237125054200234 0 1.1549471895720984 0.75 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}KPVS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}GKPVS{M(Oxidation (M))|F}TW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGPVS{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}SVPKGW;[WE][KT]K{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}SVPKGW;[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}SVPKGW;{[WT]|[RM]}{[VA]|[{I|L}G]}KS{M(Oxidation (M))|F}TW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[VP]KS{M(Oxidation (M))|F}TW 7.2161;7.1644;7.0114;6.3973;6.0036;5.6877;5.5183;5.2114;5.1018;4.9667 +;-;-;-;-;-;-;-;-;- + 3255 NaN NaN 378086.3 NaN 12683 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15975 68.584 NaN 979920 35 0 99878 0.261 + 29015 TYELRYFQI 9 92 616.8191961951685 1231.623839457137 2 616.8194580078125 MULTI HCD FTMS 0 0 0 15971 343289.09375 0.4337346395903459 -4 0.1107177734375 4 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 110.5527297667825 0.0028521687250969148 1 [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L} 9 0 + 101.16 0 0 8.2135 8.2135 91.811 0 0 0 19.16845367492388 16.478174818886373 16.478174818886373 9.208187539523749 0 2.3737125054200234 2 0.8829131673969606 0 + + [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YT]E{I|L}RYQ{M(Oxidation (M))|F}{I|L};[YT]E{I|L}RY[AG]{M(Oxidation (M))|F}{I|L};[YT]E{I|L}RQY{M(Oxidation (M))|F}{I|L};[YT]E{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]E{I|L}R[AG]Y{M(Oxidation (M))|F}{I|L};[YT]E{I|L}R[AG]{M(Oxidation (M))|F}Y{I|L};[YT]{[NV]|[RG]}[KG]Y{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[YT]RY{M(Oxidation (M))|F}Q{I|L} 8.2135;7.4659;7.1848;6.4371;6.3532;6.2319;5.6055;5.4843;5.0053;4.3088 +;-;-;-;-;-;-;-;-;- + 2760 NaN NaN 235387.7 NaN 12684 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15976 68.587 NaN 482400 35 0 40470 0.261 + 7681 FYLEGGFSKF 10 81 597.7950511296735 1193.575549326147 2 597.7951049804688 MULTI HCD FTMS 0 0 0 15971 165405.6875 0.039797355058637726 26 -0.679962158203125 5 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 67.08073823543168 0.021044403604576784 1 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 62.608 0 0 5.2454 5.2454 86.669 0 0 0 33.244171855527966 16.633571775141938 16.633571775141938 9.208187539523749 0 2.4291746928241125 0 0.8807196863200843 0 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}YE;{M(Oxidation (M))|F}Y{I|L}[KS]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}GG{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}YE;{M(Oxidation (M))|F}Y{I|L}[KS][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}NE{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};[KS]Y{[{M(Oxidation (M))|F}D]|MM}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}GGE{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 5.2454;4.4739;3.299;2.9804;2.5275;2.209;1.4338;1.0864;0.77806;0.66228 -;+;-;-;-;-;-;-;-;- + 718 + NaN NaN 158806.5 NaN 12685 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15977 68.59 NaN 278860 35 0 21544 0.261 + 15394 LPDGTSLTQTF 11 74 590.298270082073 1178.581987230946 2 590.298583984375 MULTI HCD FTMS 0 0 0 15971 118389.0625 0.1645833217484145 9 -0.23891448974609375 6 Unmodified _LPDGTSLTQTF_ ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1 34.221707139014875 0.1741640856101893 1 TQT{M(Oxidation (M))|F} 4 7 48.928 0 0 4.1514 0 0 683.3501902133679 0 683.3501902133679 0 40.169569313102755 0 0 0 1.3494850021680094 0 0.3494850021680094 0 + TQT{M(Oxidation (M))|F} 4.1514 + + 186 NaN NaN 118892.1 NaN 12686 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15978 68.594 NaN 260700 35 0 100600 0.264 + 29861 VFAKHFVNSLF 11 39 436.90787792535576 1307.7018043762673 3 436.9079895019531 MULTI HCD FTMS 0 0 0 15971 70718.3203125 0.4291004394087252 4 -0.11492156982421875 7 Unmodified _VFAKHFVNSLF_ REV__ENSG00000242550|ENST00000238508|SERPINB10 4.11662792887243 0.40086653484894175 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.2531 0 0 1029.5402541308285 0 1029.5402541308285 0 29.463950151760656 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2531 + + 4 NaN NaN 121391.5 NaN 12687 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15979 68.597 NaN 279490 35 0 45474 0.261 + 31418 VYARSGTEF 9 58 515.2543862694506 1028.4942196057011 2 515.254638671875 MULTI HCD FTMS 0 0 0 15971 65595.1171875 0.5255921286018759 -2 0.055908203125 8 Unmodified _VYARSGTEF_ REV__ENST00000552029.1_1_12:107380386-107380746:-|nuORF 32.30548876998284 0.10066689432505688 1 VYG{[SA]|[TG]}[W{I|L}]S 8 -1 56.164 0 0 5.4608 0 0 0 162.0559481256469 162.0559481256469 41.04593394886351 0 0 0 0 1.8494850021680094 2 0.3054621874040891 0 VYG{[SA]|[TG]}[W{I|L}]S 5.4608 - 177 + NaN NaN 146281.5 NaN 12688 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15980 68.6 NaN 189500 35 0 20726 0.261 + 34204 YPDPAIAQF 9 54 511.2527650378728 1020.4909771425456 2 511.25335693359375 MULTI HCD FTMS 0 0 0 15971 85549.6953125 0.8431267684385938 -1 0.02629852294921875 9 Unmodified _YPDPAIAQF_ ENSG00000170606|ENST00000304858|HSPA4 41.8396318013385 0.056899836730939755 1 {I|L}AQ{M(Oxidation (M))|F} 4 5 54.597 0 0 5.3501 0 0 543.23320844313 0 543.23320844313 0 36.62122126841915 0 0 0 1.805462187404089 0 0 0.8494850021680094 + {I|L}AQ{M(Oxidation (M))|F} 5.3501 + + 133 + NaN NaN 126264.6 NaN 12689 3289 15971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15982 68.605 NaN 1633500 35 0 247960 0.327 + -1 GLWSLSLQPM 10 115 595.3019220579614 NaN 0 595.3220825195312 PEAK HCD FTMS 0 0 0 15981 33189.578125 0.6763708987034012 -12 0.3495635986328125 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))GLWSLSLQPM(Oxidation (M))_ REV__chr19:15934409-15934694|124|21.61|0.13|7.41|-|1|CYP4F11,None|1;REV__ENSG00000171903|ENST00000402119|CYP4F11 17.11289562659939 0.30402175129113823 1 CNVA{I|L}[HK]V 8 -1 37.119 0 0 3.123 0 0 62.012073353453225 259.0724606435895 321.08453399704274 0 0 0 0 0 0.4247425010840047 0 0 1.0387254899964358 CNVA{I|L}[HK]V 3.123 - 1451 + NaN NaN 332173 NaN 12690 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15983 68.61 NaN 1008900 35 0 136820 0.261 + 25805 SLPEDFYHF 9 90 577.7613398827461 1153.5081268322922 2 578.27734375 MULTI HCD FTMS 0 0 0 15981 79880.6328125 0.5528857041322697 8 -0.20598602294921875 2 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 11.640296217721598 0.25978676193971967 1 {[TV]|[{I|L}S]}PDDQY{I|L}G 9 4 39.083 0 0 3.3882 0 0 0 162.0561464899047 162.0561464899047 15.013035283853213 0 0 0 0 0.2742275032520141 1.3979400086720375 0 0 {[TV]|[{I|L}S]}PDDQY{I|L}G 3.3882 - 367 + NaN NaN 230437.8 NaN 12691 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15984 68.613 NaN 435800 35 0 35437 0.261 + 13234 KYMDIEFDF 9 66 612.2680883328802 1222.5216237325603 2 612.7698974609375 MULTI HCD FTMS 0 0 0 15981 162677.046875 0.08876250265912443 41 -1.116363525390625 3 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 47.594388314883695 0.03493607795751234 1 D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 54.43 0 0 4.4523 0 0 438.19595342181657 0 438.19595342181657 0 45.38872836444014 0 0 0 2.2302046884880937 0 1.1237125054200234 0 + D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.4523 + + 219 + NaN NaN 152450.4 NaN 12692 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15985 68.617 NaN 334580 35 0 21862 0.261 + 27191 SYNNFFRMF 9 72 621.2738121112648 1240.5330712893294 2 621.2744140625 MULTI HCD FTMS 0 0 0 15981 239631.359375 0.04740980369647175 92 -2.519989013671875 4 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 96.36657018975838 0.004359138328518304 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 71.191 0 0 5.7387 0 0 63.99884920305369 0 63.99884920305369 0 57.37842840780033 0 0 0 2.6237125054200234 0 0 0.3807196863200844 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.7387 - 540 + NaN NaN 127460.7 NaN 12693 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15986 68.62 NaN 291040 35 0 18845 0.261 + 22957 QYVYWLHML 9 68 634.8103092675826 1267.6060656019652 2 634.8107299804688 MULTI HCD FTMS 0 0 0 15981 122046.3671875 0.3484556627024373 5 -0.13775634765625 5 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 63.562846038646086 0.012597299157545023 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RVC(Carbamidomethyl (C)){I|L} 10 7 + 55.16 0 0 4.3515 4.3515 80.745 0 0 0 13.728721920568248 9.577118610328341 9.577118610328341 0.9298626587642644 0 0.7302046884880937 1.3979400086720375 0.5 0.3807196863200844 {[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}[WY]VC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]VC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG][WY]VC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}AAC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]V[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}AA[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYAA[W{I|L}]C(Carbamidomethyl (C)){I|L};[YQ]VRM{[CP]|[EA]}VC(Carbamidomethyl (C)){I|L} 4.3515;4.2782;4.0512;3.9018;3.6286;3.538;3.3282;2.815;2.1574;1.8434 -;-;-;-;-;-;-;-;-;- 374 NaN NaN 145550 NaN 12694 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15987 68.623 NaN 425410 35 0 63411 0.261 + 1414 AYQLMTDVF 9 64 552.2575025749194 1102.5004522166387 2 552.257568359375 MULTI HCD FTMS 0 0 0 15981 144357.984375 0.559724662976047 -3 0.088836669921875 6 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 62.57269311338072 0.013982455292112035 1 VDT{M(Oxidation (M))|F}{I|L}{[QC]|[C(Carbamidomethyl (C))A]}{I|L} 8 8 54.875 0 0 4.9773 0 0 165.07914931465 0 165.07914931465 0 12.870404535280372 0 0 0 2.305462187404089 0 0.9247425010840047 0 VDT{M(Oxidation (M))|F}{I|L}{[QC]|[C(Carbamidomethyl (C))A]}{I|L} 4.9773 - 571 NaN NaN 167757.9 NaN 12695 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15988 68.627 NaN 519750 35 0 29097 0.261 + 13159 KYLQILTSL 9 98 539.8289436308202 1077.6433343284402 2 539.8289184570312 MULTI HCD FTMS 0 0 0 15981 111091.5390625 0.8207085984384525 -3 0.088836669921875 7 Unmodified _KYLQILTSL_ ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104 66.45667989310934 0.010234776021261575 1 T{I|L}{[NV]|[RG]}{I|L}TS{I|L} 8 4 55.028 0 0 5.1064 0 0 218.1265583722672 0 218.1265583722672 0 24.56074892355302 0 0 0 0 0 1.0387254899964358 0.3494850021680094 T{I|L}{[NV]|[RG]}{I|L}TS{I|L} 5.1064 - 654 NaN NaN 175057 NaN 12696 3290 15981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15990 68.632 NaN 736060 35 0 113070 0.327 + 1157 AYLESFYKF 9 70 584.289645907993 1166.5647388827858 2 584.2896728515625 MULTI HCD FTMS 0 0 0 15989 467281.84375 0.02534407525730958 33 -0.8786544799804688 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 110.6747026088012 0.0028322563155251486 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 111.44 0 0 9.5526 9.5526 94.743 0 0 0 25.642492736872597 82.97659922727185 25.642492736872597 11.020599913279625 0 3.3494850021680094 2 1.110924374808178 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[Y{I|L}]ATD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YAS{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]EAS{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9.5526;8.6079;8.5478;7.6031;7.0005;6.6141;6.0558;5.9957;5.9487;5.7978 +;-;-;-;-;-;-;-;-;- + 1580 NaN NaN 194000.7 NaN 12697 3291 15989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15991 68.636 NaN 569930 35 0 40774 0.261 + 32249 VYTVVDEMF 9 90 559.7575706348756 1117.5005883365511 2 559.7577514648438 MULTI HCD FTMS 0 0 0 15989 299167.75 0.8230189544132255 6 -0.163543701171875 2 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 139.54400939418784 2.61670173137287E-05 1 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 89.702 0 0 8.027 8.027 92.909 0 0 0 5.351832509478825 5.351832509478825 5.351832509478825 11.676801797382012 0 2.8494850021680094 1.6989700043360187 2.0114393726401687 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]VT[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}T[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]VD{[TV]|[{I|L}S]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[{I|L}T]VD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}{[{M(Oxidation (M))|F}D]|MM}YVTP{M(Oxidation (M))|F};{[ET]|[MV]}[DV][{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]VD{[YD]|[{M(Oxidation (M))|F}M]}M[{I|L}T];[YV]T[Y{M(Oxidation (M))|F}][TP]{NN|[MP]|[D{I|L}]|[EV]} 8.027;6.9821;4.9355;4.8298;4.5097;4.2545;2.2064;1.4015;0.96139 +;-;-;-;-;-;-;-;- + 551 NaN NaN 178123.7 NaN 12698 3291 15989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15992 68.64 NaN 381370 35 0 20092 0.261 + 6341 FPFYYEIKM 9 66 627.2987212994602 1252.5828896657204 2 627.2990112304688 MULTI HCD FTMS 0 0 0 15989 168293.359375 0.2002146734267066 28 -0.7314605712890625 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 76.741 0 0 6.1266 6.1266 85.665 0 0 0 5.783657523486042 5.158963840444542 5.158963840444542 5.158963840444542 0 2.6747425010840047 1.6989700043360187 0.3494850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYQY{I|L}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE;[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F} 6.1266;5.7147;5.6649;5.5868;4.9473;4.5225;4.2754;4.119;3.7357;3.5136 +;-;+;-;-;-;-;-;-;- + 1928 NaN NaN 165504.5 NaN 12699 3291 15989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15993 68.643 NaN 639810 35 0 31239 0.261 + -1 MYSIQLTNR 9 100 571.2878156800725 1140.561078426945 2 571.286865234375 MULTI HCD FTMS 0 0 0 15989 166556.1875 0.6035523971846893 -2 0.0591583251953125 4 Oxidation (M) _M(Oxidation (M))YSIQLTNR_ REV__ENSG00000236027|ENST00000445202|PATE3 25.399314129420986 0.14091189997036632 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[VP]S{M(Oxidation (M))|F}T{[DS]|[MA]|[CV]|TT} 10 -1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} + + 58.488 0.71334 0.25924 5.128 5.128 61.806 0 0 0 0 36.8052786053779 0 0 0 2.7614393726401687 0 1.7764209843288903 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[VP]S{M(Oxidation (M))|F}T{[DS]|[MA]|[CV]|TT} 5.128 - 1173 + NaN NaN 199093.9 NaN 12700 3291 15989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15994 68.646 NaN 109350 35 0 11973 0.262 -1 MPDLPNVGL 9 38 486.246975438636 970.479397944072 2 486.2469787597656 MULTI HCD FTMS 0 0 0 15989 31754.916015625 0.3239434753546588 7 -0.17975616455078125 5 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 8.745405648335112 0.2847203663274469 1 VG{I|L} 3 -1 31.198 0 0 3.2147 0 0 683.2950916974625 0 683.2950916974625 0 31.197887582883936 0 0 0 0.5 0 0 0 VG{I|L} 3.2147 + + 5 NaN NaN 103591.4 NaN 12701 3291 15989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15995 68.65 NaN 125820 35 0 13266 0.261 + -1 KVMHSMEI 8 51 495.74293529566324 NaN 0 495.7426452636719 PEAK HCD FTMS 0 0 0 15989 21179.919921875 0.5745933646745741 -17 0.4884185791015625 6 Oxidation (M) _KVM(Oxidation (M))HSMEI_ REV__ENSG00000166793|ENST00000300022|YPEL4;REV__ENST00000532314.5_1_11:57413456-57414597:-|nuORF 7.910154910731844 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 9.6041 0 0 0.97063 0 0 413.2183402184765 413.20480044558644 826.4231406640629 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 0.97063 - 15 + NaN NaN 107063.8 NaN 12702 3291 15989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15997 68.654 NaN 1113200 35 0 152000 0.327 + 29961 VFIDEKSDGF 10 105 578.7818840212378 1155.5492151092756 2 579.2848510742188 MULTI HCD FTMS 0 0 0 15996 497475.03125 0.9582614651325206 -1 0.02295684814453125 1 Unmodified _VFIDEKSDGF_ ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF 16.149105407346934 0.3600587335443843 1 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 8 7 53.211 0 0 4.6048 0 0 235.07346853101905 0 235.07346853101905 0 27.131068929195408 0 0 0 1.3494850021680094 0 0.9361818737241734 0 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 4.6048 - 1119 + NaN NaN 253996.5 NaN 12703 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15998 68.659 NaN 321640 35 0 84014 0.261 + 10066 IFFENHPYF 9 59 607.287363119328 1212.560173305456 2 607.28759765625 MULTI HCD FTMS 0 0 0 15996 161976.921875 0.07375518821579335 25 -0.6531295776367188 2 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 60.07390631473393 0.0174780869009295 1 {M(Oxidation (M))|F}E[HN]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7 4 50.054 0 0 4.128 0 0 260.1522694318375 0 260.1522694318375 0 29.084938383626522 0 0 0 2 0 0 0.7614393726401688 {M(Oxidation (M))|F}E[HN]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.128 - 100 NaN NaN 129813.6 NaN 12704 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 15999 68.662 NaN 469680 35 0 66300 0.261 -1 IPDEIIDMV 9 69 530.7649280029965 1059.515303072793 2 530.7654418945312 MULTI HCD FTMS 0 0 0 15996 107986.359375 0.6072160827155265 -6 0.17545318603515625 3 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 32.30548876998284 0.10066689432505688 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]H{I|L}D{M(Oxidation (M))|F}V 9 -1 + 58.579 0 0 5.5288 5.5288 91.498 0 0 0 11.195437047215933 41.55455634180576 11.195437047215933 38.24153794511119 0 0.9247425010840047 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]H{I|L}D{M(Oxidation (M))|F}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]H{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KS];[YV][PA]H{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KS] 5.5288;1.9195;0.27278 -;-;- 160 NaN NaN 150364.9 NaN 12705 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16000 68.666 NaN 249530 35 0 33894 0.261 + 34731 YPVNSVNIL 9 51 509.78174956629664 1017.5489461993933 2 509.7813415527344 MULTI HCD FTMS 0 0 0 15996 62281.98828125 0.8393418067386809 -1 0.02295684814453125 4 Unmodified _YPVNSVNIL_ ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF 11.494710602746466 0.2610445893512368 1 CN{I|L}{I|L} 4 6 32.713 0 0 3.2149 0 0 556.3208485334 0 556.3208485334 0 15.723010016729653 0 0 0 0.5 0 0 0 CN{I|L}{I|L} 3.2149 - 15 NaN NaN 118170 NaN 12706 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16001 68.669 NaN 187330 35 0 20198 0.261 + -1 QRSTISKM 8 53 483.75575209751185 965.4969512618237 2 483.75579833984375 MULTI HCD FTMS 0 0 0 15996 83549.3671875 1 0 0 5 Oxidation (M) _QRSTISKM(Oxidation (M))_ REV__ENST00000568432.1_1_15:42556388-42560176:-|nuORF 18.1463463914782 0.46027927471454505 1 S{M(Oxidation (M))|F}Q 3 -1 35.005 0 0 3.6256 0 0 585.3282098206822 0 585.3282098206822 0 25.400990676322905 0 0 0 0.8807196863200843 0 0 0 S{M(Oxidation (M))|F}Q 3.6256 - 45 NaN NaN 110435.4 NaN 12707 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16002 68.672 NaN 434210 35 0 82703 0.261 -1 FPIEAGDMF 9 73 521.7309096238401 1041.4472663144802 2 521.73046875 MULTI HCD FTMS 0 0 0 15996 38868.5234375 0.15145207563491095 -17 0.4782867431640625 6 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 39.957323273324995 0.06554068735427583 1 EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 39.231 0 0 3.7669 0 0 357.20408827949376 0 357.20408827949376 0 33.74606867853579 0 0 0 1.6861818737241734 0 0.3494850021680094 0 EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7669 + + 108 NaN NaN 149241.4 NaN 12708 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16003 68.676 NaN 104860 35 0 15666 0.261 + 13706 KYPLLLDNI 9 55 544.8209217349369 1087.6272905366736 2 544.8203125 MULTI HCD FTMS 0 0 0 15996 26881.404296875 0.33784581425302906 6 -0.15679931640625 7 Unmodified _KYPLLLDNI_ ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12 14.405379775768559 0.2358970535022398 1 {I|L}{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 5 4 24.309 0 0 2.2351 0 0 501.29576308418126 0 501.29576308418126 0 7.319393642848482 0 0 0 0.9247425010840047 0 0 0 + {I|L}{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 2.2351 + + 14 NaN NaN 98598.3 NaN 12709 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16004 68.679 NaN 214850 35 0 34310 0.261 + 31073 VTDIFSLSAL 10 64 533.2950554961899 1064.5755580591797 2 533.2955322265625 MULTI HCD FTMS 0 0 0 15996 42787.26953125 0.6207216494728518 6 -0.15679931640625 8 Unmodified _VTDIFSLSAL_ REV__ENSG00000181958|ENST00000641526|OR4A15;REV__nc|ENSG00000181958|Q8NGL6|OR4A15 9.38312468134398 0.42334543440173333 1 A{I|L} 2 -1 22.959 0 0 2.1566 0 0 862.4434612106621 0 862.4434612106621 0 9.463950151760656 0 0 0 0.3494850021680094 0 0 0 A{I|L} 2.1566 + + 130 NaN NaN 120130.2 NaN 12710 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16005 68.682 NaN 182420 35 0 14732 0.261 + 2323 DMRDSRDPMY 10 62 643.2684849333025 1284.5224169334049 2 643.7647094726562 MULTI HCD FTMS 0 0 0 15996 23425.7109375 0.2049959407468684 -10 0.2928314208984375 9 Unmodified _DMRDSRDPMY_ ENSG00000124160|ENST00000290231|NCOA5 2.9952420565917617 0.4594494122822477 1 EVY 3 9 30.445 0 0 2.3702 0 0 875.3530946192952 0 875.3530946192952 0 20.686318260990113 0 0 0 0.4247425010840047 0 0 0 EVY 2.3702 - 38 NaN NaN 119801.7 NaN 12711 3292 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16007 68.687 NaN 390910 35 0 39837 0.327 + 31463 VYDVVELKF 9 78 556.3052508598854 1110.5959487865707 2 556.3243408203125 MULTI HCD FTMS 0 0 0 16006 139963.46875 0.3847906342944642 -3 0.08199310302734375 1 Unmodified _VYDVVELKF_ ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7 74.19965305603844 0.007729275404663812 1 [YV]DVVE{I|L}K{M(Oxidation (M))|F} 9 0 + 91.124 0 0 8.205 8.205 96.232 0 0 0 7.18765315847925 7.18765315847925 7.18765315847925 40.03205960551831 0 2.7302046884880937 2 0 0 + + [YV]DVVE{I|L}K{M(Oxidation (M))|F};[YE][{I|L}A]VE{I|L}K{M(Oxidation (M))|F};[YV]DVV[{I|L}T][VG]{M(Oxidation (M))|F};M[{M(Oxidation (M))|F}V]VPM{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}VE{I|L}K{M(Oxidation (M))|F};[YE]{I|L}{I|L}GE{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{[QN]|[E{I|L}]|[KN]}GE{I|L}K{M(Oxidation (M))|F};[RH]{I|L}EN[KC][{I|L}V];[RH]{I|L}EGG[KC][{I|L}V];[YE]{I|L}{I|L}K{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F} 8.205;4.6005;4.5826;4.4643;4.4419;3.6323;3.4737;1.6499;1.3376;1.2346 +;-;-;-;-;-;-;-;-;- + 1430 NaN NaN 150512.1 NaN 12712 3293 16006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16008 68.692 NaN 247790 35 0 34131 0.261 + 25926 SPAPSAVLTL 10 51 478.27652383782015 954.5384947424403 2 478.2762145996094 MULTI HCD FTMS 0 0 0 16006 145035 0.18077529211145224 -13 0.37531280517578125 2 Unmodified _SPAPSAVLTL_ HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense 27.628801355627647 0.2527626205058048 1 [QP]S[TP]V{I|L}T{I|L} 9 4 + 52.611 0 0 5.5117 5.5117 83.063 0 0 0 1.7609125905568135 16.478174818886373 1.7609125905568135 1.7609125905568135 0 1.3494850021680094 0 0.3252574989159953 0 [QP]S[TP]V{I|L}T{I|L};[TP]N[TP]V{I|L}T{I|L};[TP]GG[TP]V{I|L}T{I|L} 5.5117;5.3272;4.3625 -;-;- 130 NaN NaN 113126.3 NaN 12713 3293 16006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16009 68.695 NaN 100470 35 0 6884.9 0.261 -1 0 52 467.1018892022949 NaN 0 467.10162353515625 PEAK HCD FTMS 0 0 0 16006 41884.671875 0.6125483312997845 70 -1.8809661865234375 3 NaN NaN 1 R 1 -1 0.71334 0 0 0.076523 0 0 371.9070732270523 401.15509973697505 773.0621729640274 0 0 0 0 0 0 0 0 0 R 0.076523 - 1 + NaN NaN 104344.9 NaN 12714 3293 16006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16011 68.7 NaN 1255000 35 0 292460 0.327 + 31543 VYGPLPQSF 9 88 504.2636027595603 1006.5126525859206 2 504.2637634277344 MULTI HCD FTMS 0 0 0 16010 502921.5625 0.6240036620955354 1 -0.0428009033203125 1 Unmodified _VYGPLPQSF_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 88.95385435242217 0.004553379958619559 1 [YV]APVPQS{M(Oxidation (M))|F} 9 2 + 68.028 0 0 6.7588 6.7588 86.751 0 0 0 9.646044220174076 9.646044220174076 9.646044220174076 4.955678082598915 0 2.281718309096375 1.3979400086720375 0.6643943297944485 0.3494850021680094 [YV]APVPQS{M(Oxidation (M))|F};[YV]G[{I|L}P]PQS{M(Oxidation (M))|F};[YV]APVP[AG]S{M(Oxidation (M))|F};[YV]G[{I|L}P]P[AG]S{M(Oxidation (M))|F};[YV]{[QS]|[NT]}VPAP{M(Oxidation (M))|F};[YV]APV{[QS]|[NT]}P{M(Oxidation (M))|F};[YV]G{[SA]|[TG]}VPAP{M(Oxidation (M))|F};[YV]APV{[SA]|[TG]}GP{M(Oxidation (M))|F};[YV]G[{I|L}P][SG]AP{M(Oxidation (M))|F};[YV]A[SG][{I|L}P]GP{M(Oxidation (M))|F} 6.7588;6.2664;5.4967;5.0043;4.6616;4.5628;4.471;4.3721;4.2899;4.1911 -;+;-;-;-;-;-;-;-;- + 1286 + NaN NaN 276380.4 NaN 12715 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16012 68.705 NaN 630500 35 0 161660 0.261 + 24610 RYLPTGSFPF 10 63 592.8085720950354 1183.6025912568707 2 592.8088989257812 MULTI HCD FTMS 0 0 0 16010 279235.1875 0.04980301350522482 25 -0.6627349853515625 2 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 57.72198328787511 0.049706386133502735 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 7 33.94 0 0 2.8675 0 0 774.4033337486424 0 774.4033337486424 0 23.455612550363796 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 2.8675 + + 49 NaN NaN 178484.1 NaN 12716 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16013 68.708 NaN 416460 35 0 48183 0.261 + 31464 VYDVVELKF 9 66 556.3052508598854 1110.5959487865707 2 556.305419921875 MULTI HCD FTMS 0 0 0 16010 144678.75 0.3977539887988108 -2 0.04576873779296875 3 Unmodified _VYDVVELKF_ ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7 65.47368725323818 0.010552856507075443 1 [YV]DVVE{I|L}K{M(Oxidation (M))|F} 9 0 + 100.77 0 0 9.0733 9.0733 97.162 0 0 0 11.998103176992174 11.998103176992174 11.998103176992174 33.21501508154121 0 2.916386562212267 1.6989700043360187 0 0 + + [YV]DVVE{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}VE{I|L}K{M(Oxidation (M))|F};MV{M(Oxidation (M))|F}VPM{I|L}K{M(Oxidation (M))|F};[YE][{I|L}A]VE{I|L}K{M(Oxidation (M))|F};[K{I|L}]E{[{M(Oxidation (M))|F}H]|[RQ]}{[HG]|PP}{I|L}M;[K{I|L}]E{[{M(Oxidation (M))|F}H]|[RQ]}[HA]VM 9.0733;6.0826;5.7213;4.9111;1.0907;0.48191 +;-;-;-;-;- + 603 NaN NaN 149661.8 NaN 12717 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16014 68.712 NaN 441550 35 0 47904 0.261 -1 QMEYLDMV 8 58 530.7192063336992 1059.4238597341982 2 530.7195434570312 MULTI HCD FTMS 0 0 0 16010 63905.9296875 0.5854774105506994 1 -0.0428009033203125 4 2 Oxidation (M) _QM(Oxidation (M))EYLDM(Oxidation (M))V_ ENSG00000021461|ENST00000354829|CYP3A43;ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43 14.581692164780916 0.48650662947107914 1 {I|L}DV{M(Oxidation (M))|F} 4 -1 29.017 0 0 2.7389 0 0 567.1992331246264 0 567.1992331246264 0 9.463950151760656 0 0 0 0 0 0.7614393726401688 0 {I|L}DV{M(Oxidation (M))|F} 2.7389 - 90 + NaN NaN 143698.6 NaN 12718 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16015 68.715 NaN 160630 35 0 13754 0.261 -1 FIIFVHCHLLL 11 40 471.2701557544852 1410.7886378636556 3 471.26904296875 MULTI HCD FTMS 0 0 0 16010 65381.27734375 0.5892267542686499 -2 0.04576873779296875 5 Carbamidomethyl (C) _FIIFVHC(Carbamidomethyl (C))HLLL_ ENST00000525367.1_1_11:11901789-11906208:+|nuORF 1.4551175022131473 0.41253901545122046 1 VT 2 -1 12.831 0 0 0.90949 0 0 601.3611688268107 606.2861422174436 1207.6473110442544 0 0 0 0 0 0 0 0.4247425010840047 0 VT 0.90949 - 7 + NaN NaN 109802.5 NaN 12719 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16016 68.718 NaN 323940 35 0 47409 0.261 + 7575 FYGTFDVHL 9 72 549.7664009674158 1097.5182490016316 2 549.766357421875 MULTI HCD FTMS 0 0 0 16010 62709.71875 0.23171476065856653 -6 0.15418243408203125 6 Unmodified _FYGTFDVHL_ ENSG00000090054|ENST00000262554|SPTLC1 81.61307344734483 0.005330412723537057 1 {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}] 9 0 + 46.218 0 0 4.2111 4.2111 88.813 0 0 0 18.682058386812187 2.632192780232785 2.632192780232785 28.131207496182054 0 1.7179001828205482 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}];[Y{M(Oxidation (M))|F}]GT{M(Oxidation (M))|F}DV[H{I|L}];{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[HC]V[H{I|L}];{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[C(Carbamidomethyl (C))R]KP{M(Oxidation (M))|F};[H{I|L}][C(Carbamidomethyl (C))R][HQ]T{M(Oxidation (M))|F} 4.2111;1.648;1.5191;1.3316;0.17572 +;+;-;-;- + 229 + NaN NaN 132663.8 NaN 12720 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16017 68.722 NaN 212550 35 0 16068 0.261 -1 YSCPEEVLS 9 70 542.2369592721791 1082.459365611158 2 542.2369995117188 MULTI HCD FTMS 0 0 0 16010 53335.38671875 0.5384489827531282 12 -0.29387664794921875 7 Carbamidomethyl (C) _YSC(Carbamidomethyl (C))PEEVLS_ CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46 20.453626601364224 0.18364154288633264 1 V{[SA]|[TG]}[QP]C{M(Oxidation (M))|F}N 8 -1 27.357 0 0 2.5273 0 0 218.126756736525 0 218.126756736525 0 8.659875379401637 0 0 0 0.9247425010840047 0 0.3494850021680094 0 V{[SA]|[TG]}[QP]C{M(Oxidation (M))|F}N 2.5273 - 190 NaN NaN 113288.4 NaN 12721 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16018 68.725 NaN 235740 35 0 20388 0.261 -1 0 67 643.2904757610272 642.2831992944272 1 643.2677612304688 MULTI HCD FTMS 0 0 0 16010 9956.2119140625 0.39664173666501423 -1 0.01296234130859375 8 NaN NaN 1 [YV]{M(Oxidation (M))|F} 3 -1 18.697 0 0 2.911 0 0 0 230.09332437671154 230.09332437671154 3.4801371741293288 0 0 0 0 0 1.3010299956639813 0 0 [YV]{M(Oxidation (M))|F} 2.911 - 21 NaN NaN 126705.4 NaN 12722 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16019 68.728 NaN 122240 35 0 23032 0.264 -1 0 37 490.7923563270418 979.5701597208836 2 490.79205322265625 MULTI HCD FTMS 0 0 0 16010 21359.42578125 0.0422726060804871 23 -0.60736083984375 9 NaN NaN 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6511 0 0 735.3957060291337 0 735.3957060291337 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6511 - 3 NaN NaN 100717.9 NaN 12723 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16020 68.732 NaN 126810 35 0 23128 0.261 + 25684 SIFVIGESTL 10 42 533.2950554961899 1064.5755580591797 2 533.3084106445312 MULTI HCD FTMS 0 0 0 16010 24671.833984375 0.3579181764593945 8 -0.1990509033203125 10 Unmodified _SIFVIGESTL_ REV__ENSG00000120008|ENST00000263461|WDR11;REV__WDR11-PDLIM1|1|fusion 5.731851221503515 0.44496410492002586 1 A{I|L} 2 -1 19.464 0 0 1.8283 0 0 862.4448719709 0 862.4448719709 0 6.020599913279625 0 0 0 0 0 0 0 A{I|L} 1.8283 - 16 NaN NaN 114401.5 NaN 12724 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16021 68.735 NaN 115560 35 0 15203 0.261 + 23191 RFLNDPGHLLW 11 47 456.5785348433344 1366.7137751302032 3 456.57855224609375 MULTI HCD FTMS 0 0 0 16010 24261.96484375 0.47113355814416374 -3 0.0687255859375 11 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 6.623454094837244 0.3898724468670146 1 W 1 10 21.99 0 0 1.6089 0 0 1162.6239904395766 0 1162.6239904395766 0 19.51544993495972 0 0 0 0.5 0 0 0 + W 1.6089 + + 11 + NaN NaN 97903.2 NaN 12725 3294 16010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16023 68.743 NaN 1745300 35 0 213960 0.327 + 11960 KFNPVSFTW 9 94 563.2902382284798 1124.5659235237595 2 563.2902221679688 MULTI HCD FTMS 0 0 0 16022 975592.1875 0.5463307563340974 2 -0.0520172119140625 1 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 149.91393105778798 8.917243180786556E-06 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW 9 0 + 95.913 0 0 8.5289 8.5289 90.525 0 0 0 0.6800526444913402 65.52887198244136 0.6800526444913402 6.862066933883511 0 3.1549471895720984 0 1.1549471895720984 0.7742275032520141 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}[KG]PVS{M(Oxidation (M))|F}TW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGPVS{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}SVP[KG]W;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}SVP[KG]W;[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}SVP[KG]W;{[WT]|[RM]}[KA]VS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}SV[H{I|L}]A{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[KG]PVS{[WT]|[RM]}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QV]|[N{I|L}]|[RA]|[KV]}VS{M(Oxidation (M))|F}T{[DA]|[EG]} 8.5289;7.9187;7.7101;7.6436;7.2287;7.0518;6.114;4.8545;4.8263;4.8223 +;-;-;-;-;-;-;-;-;- + 2515 NaN NaN 348548 NaN 12726 3295 16022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16024 68.747 NaN 1078700 35 0 112450 0.261 + 29016 TYELRYFQI 9 97 616.8191961951685 1231.623839457137 2 616.8192138671875 MULTI HCD FTMS 0 0 0 16022 535176.0625 0.6761776031104045 2 -0.0520172119140625 2 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 100.0907132914201 0.004261551473353346 1 [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L} 9 0 + 105.87 0 0 8.596 8.596 92.398 0 0 0 13.278324880759484 16.478174818886373 13.278324880759484 9.208187539523749 0 2.4291746928241125 2 1.2984550065040281 0 + + [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YE]T{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YE]T{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YT]E{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]EY[R{I|L}]{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}R[AG]{M(Oxidation (M))|F}Y{I|L};[YE]T{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]E{I|L}RY{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YT]EY[R{I|L}]{M(Oxidation (M))|F}[AG]{I|L} 8.596;7.8483;7.5179;6.7702;6.6666;6.1021;5.9189;5.5885;5.5347;5.3545 +;-;-;-;-;-;-;-;-;- + 2839 NaN NaN 241268.6 NaN 12727 3295 16022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16025 68.751 NaN 692260 35 0 205790 0.262 + 14097 KYYQTPRLWLF 11 60 505.6098334802913 1513.807671041074 3 505.9444580078125 MULTI HCD FTMS 0 0 0 16022 139250.09375 0.703785259720435 2 -0.0520172119140625 3 Unmodified _KYYQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 5.868138319507137 0.39318500527288264 1 K[DG]W{I|L}{M(Oxidation (M))|F} 6 7 40.406 0 0 2.6692 0 0 749.4124967808843 0 749.4124967808843 0 24.0063752461539 0 0 0 0.9247425010840047 0 0.4247425010840047 0 K[DG]W{I|L}{M(Oxidation (M))|F} 2.6692 - 118 NaN NaN 179135 NaN 12728 3295 16022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16026 68.754 NaN 150980 35 0 10174 0.261 + 26686 SYANYFIRL 9 68 573.8012983781484 1145.5880438230968 2 573.8025512695312 MULTI HCD FTMS 0 0 0 16022 44751.0390625 0.07836123592499078 24 -0.61993408203125 4 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 32.78568957990786 0.09846250359632436 1 {M(Oxidation (M))|F}[VS]P{M(Oxidation (M))|F}QS{I|L} 8 7 48.141 0 0 4.2023 0 0 222.09988600898595 0 222.09988600898595 0 22.71144069483583 0 0 0 1.7302046884880937 0 0.3494850021680094 0 {M(Oxidation (M))|F}[VS]P{M(Oxidation (M))|F}QS{I|L} 4.2023 - 513 NaN NaN 101578.6 NaN 12729 3295 16022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16028 68.759 NaN 602440 35 0 85093 0.327 -1 FNMYLILIM 9 81 595.3019220579614 NaN 0 595.3220825195312 PEAK HCD FTMS 0 0 0 16027 29153.3359375 0.5941162600496006 -6 0.153594970703125 1 2 Oxidation (M) _FNM(Oxidation (M))YLILIM(Oxidation (M))_ ENSG00000176136|ENST00000589410|MC5R 18.13498045792455 0.19991664011725976 1 NVA{I|L}HKV 7 -1 41.006 0 0 3.45 0 0 165.03901760527407 259.07224451236567 424.11126211763974 0 0 0 0 0 0.3807196863200844 0 0 0.4247425010840047 NVA{I|L}HKV 3.45 - 464 + NaN NaN 182065.5 NaN 12730 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16029 68.763 NaN 597290 35 0 87872 0.261 + 1158 AYLESFYKF 9 78 584.289645907993 1166.5647388827858 2 584.2897338867188 MULTI HCD FTMS 0 0 0 16027 372308.1875 0.020192966726866383 38 -1.04473876953125 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 110.6747026088012 0.0028322563155251486 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 114.18 0 0 9.7876 9.7876 95.086 0 0 0 18.802112417116064 16.478174818886373 16.478174818886373 11.721675119240516 0 3.3494850021680094 1.6989700043360187 1.3851518780601921 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYS{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]AESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]ATD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AEYAYK{M(Oxidation (M))|F} 9.7876;8.7828;8.692;8.6757;8.1759;7.6872;7.6709;7.1711;7.0802;7.064 +;-;-;-;-;-;-;-;-;- + 1881 NaN NaN 173648 NaN 12731 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16030 68.767 NaN 1704100 35 0 370280 0.263 -1 FMFLTLLCLTL 11 64 463.25022747711455 1386.7288530315436 3 463.2503967285156 MULTI HCD FTMS 0 0 0 16027 611315.5625 0.6774848281838927 -6 0.153594970703125 3 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))FLTLLC(Carbamidomethyl (C))LTL_ ABCD4|p.L41F|1|0.07|ENSG00000119688|chr14:74300184-74300184|C/G|missense_variant 13.51866281300042 0.33929385944539686 1 {I|L}WT{I|L} 4 -1 45.433 0 0 3.2763 0 0 855.4217948902772 0 855.4217948902772 0 27.47425010840047 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}WT{I|L} 3.2763 - 116 NaN NaN 345284.5 NaN 12732 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16031 68.77 NaN 559130 35 0 101080 0.261 + 15390 LPDGQVITI 9 53 478.27652383782015 954.5384947424403 2 478.2764892578125 MULTI HCD FTMS 0 0 0 16027 366348.40625 0.4566259189465213 -10 0.2798614501953125 4 Unmodified _LPDGQVITI_ ACTG2|p.E242Q|1|0.26|ENSG00000163017|chr2:73914790-73914790|G/C|missense_variant;ENSG00000075624|ENST00000646664|ACTB;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP 45.69961567697781 0.039180348357221985 1 [QP]S[TP]V{I|L}T{I|L} 9 4 + 56.647 0 0 5.9345 5.9345 92.888 0 0 0 5.461434083857526 22.6059905927697 5.461434083857526 56.6470593548587 0 1.5 0 0.7302046884880937 0.3252574989159953 [QP]S[TP]V{I|L}T{I|L} 5.9345 - 95 NaN NaN 163270.1 NaN 12733 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16032 68.774 NaN 423720 35 0 52899 0.261 + 1415 AYQLMTDVF 9 65 552.2575025749194 1102.5004522166387 2 552.257568359375 MULTI HCD FTMS 0 0 0 16027 184890.75 0.7168838854268503 3 -0.088470458984375 5 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 65.23502041540118 0.010630085227462206 1 QS{I|L}E{[ES]|[DT]|[{I|L}C]}V{M(Oxidation (M))|F} 8 4 55.539 0 0 5.0376 0 0 165.04614455390782 0 165.04614455390782 0 35.4402281476392 0 0 0 1.4247425010840047 0 0.7302046884880937 0 QS{I|L}E{[ES]|[DT]|[{I|L}C]}V{M(Oxidation (M))|F} 5.0376 - 315 NaN NaN 142162.4 NaN 12734 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16033 68.777 NaN 382370 35 0 39780 0.261 + 13235 KYMDIEFDF 9 60 612.2680883328802 1222.5216237325603 2 612.2681884765625 MULTI HCD FTMS 0 0 0 16027 266496.4375 0.10220566317069409 47 -1.2969589233398438 6 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 41.95555342248728 0.056367691549927025 1 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 53.18 0 0 4.35 0 0 262.09504897285314 0 262.09504897285314 0 47.695407399542304 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.35 - 234 NaN NaN 147122.4 NaN 12735 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16034 68.78 NaN 349900 35 0 21278 0.261 + 27192 SYNNFFRMF 9 66 621.2738121112648 1240.5330712893294 2 621.2743530273438 MULTI HCD FTMS 0 0 0 16027 193748.609375 0.038332143008706056 98 -2.70562744140625 7 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 96.36657018975838 0.004359138328518304 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 67.938 0 0 5.4765 0 0 63.99644084266249 0 63.99644084266249 0 62.45358466288572 0 0 0 2.329689690656103 0 0 0.3494850021680094 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4765 - 324 + NaN NaN 132353.5 NaN 12736 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16035 68.784 NaN 460360 35 0 29988 0.261 + 7682 FYLEGGFSKF 10 91 597.7950511296735 1193.575549326147 2 597.79541015625 MULTI HCD FTMS 0 0 0 16027 174857.234375 0.042071439901323275 33 -0.9003448486328125 8 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 61.08992128646608 0.03745793995309655 1 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 65.025 0 0 5.4479 5.4479 86.998 0 0 0 5.6424927368725974 46.44168017729987 5.6424927368725974 9.208187539523749 0 2.368415180652539 0 0.6549471895720984 0 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]Q{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AY{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][AG]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][DP][YK]SK{M(Oxidation (M))|F};{I|L}{I|L}{[{M(Oxidation (M))|F}C]|[YS]}[K{I|L}]{M(Oxidation (M))|F}C[HA] 5.4479;4.6765;3.4109;3.0392;2.9153;2.6394;2.368;2.2677;2.0614;1.3823 -;+;-;-;-;-;-;-;-;- + 1416 NaN NaN 151962 NaN 12737 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16036 68.787 NaN 239970 35 0 65524 0.261 -1 KYMDVQFDF 9 54 604.7683668648137 NaN 0 604.76806640625 PEAK HCD FTMS 0 0 0 16027 68194.3359375 0.6003903246425549 3 -0.088470458984375 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 22.65808497894818 0.16955659035853546 1 D{M(Oxidation (M))|F}N 3 -1 30.445 0 0 2.5213 0 0 165.08013171783278 663.2830687692433 828.363200487076 0 0 0 0 0 1.4247425010840047 0 0 0 D{M(Oxidation (M))|F}N 2.5213 - 53 + NaN NaN 110026.9 NaN 12738 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16037 68.79 NaN 415260 35 0 121000 0.262 -1 YRPMKECVWKI 11 53 509.25950013331504 1524.7566710001452 3 509.2591857910156 MULTI HCD FTMS 0 0 0 16027 135034.890625 0.90608534921928 -1 0.015838623046875 10 Carbamidomethyl (C),Oxidation (M) _YRPM(Oxidation (M))KEC(Carbamidomethyl (C))VWKI_ ENSG00000038295|ENST00000061240|TLL1 2.6312355333042263 0.4073809613003177 1 {I|L}{I|L} 2 -1 19.464 0 0 1.2765 0 0 1280.5791220599954 0 1280.5791220599954 0 12.474250108400469 0 0 0 0 0 0 0 {I|L}{I|L} 1.2765 - 7 NaN NaN 138957.4 NaN 12739 3296 16027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16039 68.795 NaN 535960 35 0 26622 0.327 + 32250 VYTVVDEMF 9 84 559.7575706348756 1117.5005883365511 2 559.7576293945312 MULTI HCD FTMS 0 0 0 16038 207526.203125 0.5709104631407769 12 -0.3010406494140625 1 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 125.62461146993168 0.0008703235425492373 1 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 72.756 0 0 6.5106 6.5106 92.252 0 0 0 1.817496819840656 1.817496819840656 1.817496819840656 23.354706403678875 0 2.6549471895720984 1.3010299956639813 1.5114393726401687 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]V{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PVV{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}T][DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]T{[QD]|[EN]|[WG]|[KD]|[RS]}[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PV{[YD]|[{M(Oxidation (M))|F}M]}{[ET]|[MV]}{M(Oxidation (M))|F} 6.5106;4.4207;3.3951;3.1103;2.9753;0.97871 +;-;-;-;-;- + 427 NaN NaN 160876.2 NaN 12740 3297 16038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16040 68.799 NaN 248880 35 0 13768 0.261 + 6342 FPFYYEIKM 9 74 627.2987212994602 1252.5828896657204 2 627.2988891601562 MULTI HCD FTMS 0 0 0 16038 121928.15625 0.14505507570693002 34 -0.9265899658203125 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 59.368380827593164 0.01846506874148156 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 65.767 0 0 5.2505 5.2505 82.904 0 0 0 2.8258344212375164 2.4072928877252906 2.4072928877252906 2.4072928877252906 0 2.309894379144197 0 0.3494850021680094 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[HG]|PP}V{M(Oxidation (M))|F}NYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE;{M(Oxidation (M))|F}P[KP]DD{M(Oxidation (M))|F}{I|L}K{M(Oxidation (M))|F} 5.2505;5.0584;5.0249;4.5186;3.7603;2.9678;2.8488;2.6456;2.4281;2.3902 +;+;-;-;-;-;-;-;-;- + 761 + NaN NaN 136243.3 NaN 12741 3297 16038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16041 68.803 NaN 377270 35 0 19263 0.262 + 16214 LPVVDFNEM 9 96 540.2575552800864 1078.5005576269727 2 540.2577514648438 MULTI HCD FTMS 0 0 0 16038 96030.8828125 0.7390371280998779 -1 0.0361785888671875 3 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 122.17920374332846 0.0010792739174387011 1 VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6 3 74.742 0 0 6.9302 0 0 309.20494277168126 0 309.20494277168126 0 51.091896990114236 0 0 0 2.5356668758921828 0 0.3494850021680094 0.6505149978319906 + VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6.9302 + + 284 NaN NaN 143257.7 NaN 12742 3297 16038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16042 68.806 NaN 175380 35 0 25680 0.261 -1 MYLKQILYL 9 43 600.838292541434 1199.662032149668 2 600.838623046875 MULTI HCD FTMS 0 0 0 16038 70139.640625 0.35299010166949596 -14 0.40026092529296875 4 Oxidation (M) _M(Oxidation (M))YLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 11.640296217721598 0.25978676193971967 1 {I|L}Y{I|L} 3 -1 31.198 0 0 2.6006 0 0 792.4180720657579 0 792.4180720657579 0 28.098943791441968 0 0 0 0.5 0 0 0 {I|L}Y{I|L} 2.6006 + + 16 NaN NaN 109691.1 NaN 12743 3297 16038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16044 68.811 NaN 583660 35 0 63772 0.326 + -1 CLMCISLIGF 10 86 578.7818840212378 1155.5492151092756 2 579.284912109375 MULTI HCD FTMS 0 0 0 16043 227168.875 0.43758413048997913 5 -0.11419677734375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LMCISLIGF_ REV__ENSG00000064115|ENST00000343028|TM7SF3 14.838274106304384 0.3723198072575719 1 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 8 -1 45.487 0 0 3.9364 0 0 235.07317007396495 0 235.07317007396495 0 34.275917732169376 0 0 0 1.3494850021680094 0 0.28872548999643577 0 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 3.9364 - 285 + NaN NaN 168749.7 NaN 12744 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16045 68.816 NaN 255040 35 0 64750 0.261 + 10067 IFFENHPYF 9 61 607.287363119328 1212.560173305456 2 607.287841796875 MULTI HCD FTMS 0 0 0 16043 179943.40625 0.08193611560541772 31 -0.8479537963867188 2 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 63.960520009940105 0.0120409805053046 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F} 9 0 + 59.196 0 0 4.8819 4.8819 87.325 0 0 0 6.941038269799677 42.99832993881884 6.941038269799677 11.030520608807407 0 1.6822333069283655 1.3010299956639813 0 0.7302046884880937 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E[WQ]A{[WS]|[C(Carbamidomethyl (C)){I|L}]};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EN[RD]{[WS]|[C(Carbamidomethyl (C)){I|L}]};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGG[RD]{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4.8819;3.9722;3.5235;2.7641 +;-;-;- + 338 NaN NaN 124478.5 NaN 12745 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16046 68.819 NaN 392730 35 0 36449 0.262 -1 IPDEIIDMV 9 57 530.7649280029965 1059.515303072793 2 530.764892578125 MULTI HCD FTMS 0 0 0 16043 177838.4375 1 0 0 3 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 32.30548876998284 0.10066689432505688 1 H{I|L}D{M(Oxidation (M))|F}V 5 -1 49.196 0 0 4.6432 0 0 430.2189198224625 0 430.2189198224625 0 32.2062251842808 0 0 0 1.4247425010840047 0 0 0 H{I|L}D{M(Oxidation (M))|F}V 4.6432 - 47 NaN NaN 140213 NaN 12746 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16047 68.823 NaN 224170 35 0 44518 0.261 + 2935 DYTIGFGKF 9 63 524.2591094542278 1046.5036659752554 2 524.26123046875 MULTI HCD FTMS 0 0 0 16043 61446.4375 0.6479087675485121 5 -0.11419677734375 4 Unmodified _DYTIGFGKF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 66.45667989310934 0.010234776021261575 1 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F} 9 2 + 68.399 0 0 6.536 6.536 87.542 0 0 0 15.347040357455839 57.43001638583941 15.347040357455839 7.944087325889981 0 2.6237125054200234 2 0.7302046884880937 0 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}E{I|L}{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}E{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};[YV]{[ET]|[MV]}{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}V]Y{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};[YV]{[ET]|[MV]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 6.536;5.7769;4.603;3.8439;2.8289;2.1635;2.0698 -;-;-;-;-;-;- 340 NaN NaN 125211.4 NaN 12747 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16048 68.826 NaN 200200 35 0 19044 0.261 + 3951 EQFLKQHFETL 11 50 473.9135366068298 1418.7187804206894 3 473.91387939453125 MULTI HCD FTMS 0 0 0 16043 83564.375 1 0 0 5 Unmodified _EQFLKQHFETL_ ENSG00000137802|ENST00000457542|MAPKBP1;ENST00000502695.1_1_15:42114172-42114769:+|nuORF;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;ENST00000506301.1_1_15:42114172-42114999:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 2.2527281973983926 0.4090409658946738 1 T{I|L} 2 9 25.217 0 0 1.7774 0 0 1186.5753108579465 0 1186.5753108579465 0 19.731975075880328 0 0 0 0 0 0.4247425010840047 0 + T{I|L} 1.7774 + + 7 NaN NaN 104789.4 NaN 12748 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16049 68.829 NaN 159960 35 0 27156 0.261 + 15547 LPDPRSRH 8 48 489.2674131905242 976.5202734478485 2 489.267822265625 MULTI HCD FTMS 0 0 0 16043 73099.8984375 0.506847828760079 -8 0.20598602294921875 6 Unmodified _LPDPRSRH_ ENST00000375446.4_1_9:95884160-95884508:-|nuORF 16.942295170755138 0.46913822049235215 1 {I|L}PN 3 6 41.287 0 0 4.2279 0 0 0 649.3330782525999 649.3330782525999 30.049406363485858 0 0 0 0 0.3494850021680094 1.3979400086720375 0 0 {I|L}PN 4.2279 - 20 + NaN NaN 104401.9 NaN 12749 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16050 68.833 NaN 134300 35 0 11328 0.261 + 14852 LKFVNLNF 8 49 497.7897170497334 993.5648811662668 2 497.7899475097656 MULTI HCD FTMS 0 0 0 16043 31083.685546875 0.513619354021683 2 -0.0489501953125 7 Unmodified _LKFVNLNF_ ENST00000603544.5_2_14:35649921-35735939:+|nuORF 25.399314129420986 0.40691472774782006 1 N{M(Oxidation (M))|F} 2 6 23.711 0 0 2.3865 0 0 714.4444944729227 0 714.4444944729227 0 0.013487579716766618 0 0 0 0.4247425010840047 0 0 0 + N{M(Oxidation (M))|F} 2.3865 + + 21 NaN NaN 99981.6 NaN 12750 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16051 68.836 NaN 136660 35 0 22660 0.261 + 14574 LFLCFLLN 8 58 491.77636754456495 981.5381821559299 2 491.7760925292969 MULTI HCD FTMS 0 0 0 16043 44520.4609375 0.6022838642977153 3 -0.06845855712890625 8 Unmodified _LFLCFLLN_ REV__ENST00000486701.1_1_2:27663393-27664286:+|nuORF 9.347437153973935 0.5250182646323369 1 {I|L}P 2 -1 24.776 0 0 2.5242 0 0 753.3918496827187 0 753.3918496827187 0 3.5784094103974695 0 0 0 0.3807196863200844 0 0 0 {I|L}P 2.5242 - 26 NaN NaN 114344.5 NaN 12751 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16052 68.839 NaN 102850 35 0 12460 0.261 + 12424 KPNVFSFGA 9 43 483.75575209751185 965.4969512618237 2 483.7554016113281 MULTI HCD FTMS 0 0 0 16043 30547.783203125 0.3656255484804596 6 -0.13378143310546875 9 Unmodified _KPNVFSFGA_ REV__ENSG00000163932|ENST00000330452|PRKCD;REV__nc|ENSG00000163932|Q05655-2|PRKCD 9.38312468134398 0.279288223203164 1 S{M(Oxidation (M))|F}Q 3 -1 23.416 0 0 2.4253 0 0 585.3278320944631 0 585.3278320944631 0 22.931825014007217 0 0 0 0.3494850021680094 0 0 0 S{M(Oxidation (M))|F}Q 2.4253 - 9 NaN NaN 93789 NaN 12752 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16053 68.842 NaN 103890 35 0 9496.3 0.261 + 21554 PYLPNQIQL 9 51 543.3031228870129 1084.5916928408258 2 543.30224609375 MULTI HCD FTMS 0 0 0 16043 40611.29296875 0.024391818861675282 44 -1.2217330932617188 10 Unmodified _PYLPNQIQL_ REV__ENSG00000170075|ENST00000367282|GPR37L1 6.723162845929126 0.3000504726104499 1 {I|L}Q{I|L} 3 -1 29.693 0 0 2.7377 0 0 712.3559437482437 0 712.3559437482437 0 22.703037561203843 0 0 0 0.3494850021680094 0 0 0 {I|L}Q{I|L} 2.7377 + + 11 NaN NaN 97605.6 NaN 12753 3298 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16055 68.847 NaN 615730 35 0 32779 0.327 + 34463 YPEVRIVLM 9 91 560.3153425348769 NaN 0 560.3156127929688 PEAK HCD FTMS 0 0 0 16054 103352.375 0.49004024825349757 1 -0.01287078857421875 1 Unmodified _YPEVRIVLM_ ENSG00000135829|ENST00000367549|DHX9 38.61474834105838 0.08271793371078505 1 {M(Oxidation (M))|F}E[DV]VTP 7 6 19.433 0 0 1.7372 0 0 166.1998210070746 162.05599390201408 328.2558149090887 0 0 0 0 0 0.5 0 1.3129529932484498 0 {M(Oxidation (M))|F}E[DV]VTP 1.7372 - 342 + NaN NaN 193954.6 NaN 12754 3299 16054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16056 68.852 NaN 243090 35 0 50719 0.261 + 2936 DYTIGFGKF 9 58 524.2591094542278 1046.5036659752554 2 524.7590942382812 MULTI HCD FTMS 0 0 0 16054 86166.1875 0.888052291454972 1 -0.01287078857421875 2 Unmodified _DYTIGFGKF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 32.78568957990786 0.09846250359632436 1 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L}[TA]{M(Oxidation (M))|F}A 8 5 42.925 0 0 4.1017 0 0 0 161.05691101841583 161.05691101841583 14.737059521965108 0 0 0 0 1.2302046884880937 1.6989700043360187 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L}[TA]{M(Oxidation (M))|F}A 4.1017 - 130 NaN NaN 129863.9 NaN 12755 3299 16054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16057 68.855 NaN 141050 35 0 8129.8 0.261 -1 QYVYWLHML 9 46 634.8103092675826 1267.6060656019652 2 634.810791015625 MULTI HCD FTMS 0 0 0 16054 49326.49609375 0.14083251538925973 14 -0.35626220703125 3 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 26.34127834903884 0.13277353811156473 1 {I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 6 -1 32.224 0 0 2.5421 0 0 415.18895156074376 0 415.18895156074376 0 16.0256843593644 0 0 0 0.3807196863200844 0 0 0 {I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 2.5421 - 39 NaN NaN 113002.6 NaN 12756 3299 16054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16059 68.86 NaN 612680 35 0 126830 0.327 + 7576 FYGTFDVHL 9 75 549.7664009674158 1097.5182490016316 2 549.7666015625 MULTI HCD FTMS 0 0 0 16058 270633.25 1 0 0 1 Unmodified _FYGTFDVHL_ ENSG00000090054|ENST00000262554|SPTLC1 125.62461146993168 0.0008703235425492373 1 {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}] 9 0 + 69.166 0 0 6.302 6.302 91.469 0 0 0 37.05948102688779 4.762036441594191 4.762036441594191 19.912829629673624 0 2.2856668758921828 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}];[Y{M(Oxidation (M))|F}]GT{M(Oxidation (M))|F}DV[H{I|L}];[HV][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}TGYE;{M(Oxidation (M))|F}YG[KQ][DP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[C(Carbamidomethyl (C))R]K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6.302;4.4877;3.9503;1.6487;0.011238 +;+;-;-;- + 345 + NaN NaN 175733.6 NaN 12757 3300 16058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16060 68.865 NaN 501810 35 0 24417 0.261 + 29088 TYGEIFEKF 9 92 567.2791460627044 1132.5437391922087 2 567.2788696289062 MULTI HCD FTMS 0 0 0 16058 153819.828125 0.006238600837268053 216 -5.976036071777344 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 45.69961567697781 0.039180348357221985 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 6 + 51.823 0 0 4.5758 4.5758 88.514 0 0 0 19.476212463643414 14.973024840566467 14.973024840566467 19.476212463643414 0 1.8684151806525389 1.6989700043360187 0.3252574989159953 0 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};[YT][{I|L}T][YT]VSW;{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};[RH]{[QG]|[NA]}[MT]EK{M(Oxidation (M))|F};[RH]E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HPT{I|L} 4.5758;2.8562;2.7712;1.5681;1.0516;0.11536;0.046108 -;-;-;-;-;-;- 564 NaN NaN 157414 NaN 12758 3300 16058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16061 68.868 NaN 404280 35 0 43701 0.261 + 31465 VYDVVELKF 9 75 556.3052508598854 1110.5959487865707 2 556.305419921875 MULTI HCD FTMS 0 0 0 16058 229122.4375 0.6299084242774508 4 -0.08483123779296875 3 Unmodified _VYDVVELKF_ ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7 65.47368725323818 0.010552856507075443 1 [YV]DVVE{I|L}K{M(Oxidation (M))|F} 9 0 + 91.889 0 0 8.2739 8.2739 93.325 0 0 0 5.392047051987348 5.392047051987348 5.392047051987348 11.593793813122062 0 2.9035984316004217 1.5228787452803376 0 0 + + [YV]DVVE{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}VE{I|L}K{M(Oxidation (M))|F};[VP]P{I|L}EVVDP{M(Oxidation (M))|F};[K{I|L}]EV[DV][YV]{M(Oxidation (M))|F} 8.2739;7.23;5.7419;0.9591 +;-;-;- + 405 NaN NaN 146055.2 NaN 12759 3300 16058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16062 68.872 NaN 237520 35 0 34308 0.261 -1 VYQHDFCGPY 10 59 643.2684849333025 1284.5224169334049 2 643.268798828125 MULTI HCD FTMS 0 0 0 16058 119124.046875 0.7798582005139495 -10 0.25493621826171875 4 Carbamidomethyl (C) _VYQHDFC(Carbamidomethyl (C))GPY_ ENSG00000172324|ENST00000302040|OR5A2 13.90604991867851 0.3810395177745597 1 {M(Oxidation (M))|F}YVY 4 -1 42.423 0 0 3.3026 0 0 694.2823561091789 0 694.2823561091789 0 7.985775332874283 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}YVY 3.3026 - 76 NaN NaN 115030.9 NaN 12760 3300 16058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16063 68.875 NaN 121170 35 0 21698 0.262 + 28616 TQPRALQRP 9 53 533.8106214600779 NaN 0 533.8107299804688 PEAK HCD FTMS 0 0 0 16058 22089.796875 0.7928667915767504 2 -0.03907012939453125 5 Unmodified _TQPRALQRP_ ENST00000514254.2_1_12:124412777-124412945:-|nuORF 1.6526216038709556 0.28723846860855273 1 P 1 8 5.4846 0 0 0.51469 0 0 549.3274063949619 416.1912935846313 965.5186999795933 0 0 0 0 0 0 0 0 0 + P 0.51469 + + 8 + NaN NaN 108945.6 NaN 12761 3300 16058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16065 68.88 NaN 911000 35 0 96198 0.327 + 11961 KFNPVSFTW 9 90 563.2902382284798 1124.5659235237595 2 563.2901000976562 MULTI HCD FTMS 0 0 0 16064 397345.625 0.22251319620401805 8 -0.21636962890625 1 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 99.75527289724121 0.004270341300239591 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW 9 0 + 75.328 0 0 6.6984 6.6984 88.095 0 0 0 4.137342758552691 46.23589978636623 4.137342758552691 8.499934467764874 0 2.305462187404089 0 0.3807196863200844 0.6861818737241735 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}[KG]PVS{M(Oxidation (M))|F}TW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGPVS{M(Oxidation (M))|F}TW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[PG]K{M(Oxidation (M))|F}TW;{[WT]|[RM]}[KA]VS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}[KG][KS]MNEK;{[CT]|[{M(Oxidation (M))|F}G]}[PA][TA]K{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}K[PG][VS]W;{[WT]|[RM]}{M(Oxidation (M))|F}S[{I|L}T]NEK;[{M(Oxidation (M))|F}T]AA[PG]K{M(Oxidation (M))|F}TW 6.6984;5.9425;5.8795;4.2732;4.2489;3.5605;3.4098;3.2066;3.1961;2.9593 +;-;-;-;-;-;-;-;-;- + 1450 NaN NaN 224309.2 NaN 12762 3301 16064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16066 68.884 NaN 853360 35 0 60410 0.261 + 29017 TYELRYFQI 9 102 616.8191961951685 1231.623839457137 2 616.8193359375 MULTI HCD FTMS 0 0 0 16064 310587.96875 0.39241782841194284 8 -0.21636962890625 2 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 80.6760300276096 0.005633624786464751 1 [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L} 9 0 + 95.601 0 0 7.7622 7.7622 86.364 0 0 0 23.667053245199625 16.478174818886373 16.478174818886373 0.45757490560674796 0 2.329689690656103 2 1.024227503252014 0 + + [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}GA{I|L};[YT]KN[VG]Y{M(Oxidation (M))|F}Q{I|L};[YT]KN[VG]Y{M(Oxidation (M))|F}GA{I|L};[YT]KGG[VG]Y{M(Oxidation (M))|F}Q{I|L};[YT]KGG[VG]Y{M(Oxidation (M))|F}GA{I|L};[YT]E{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]{[NV]|[RG]}[KG]Y{M(Oxidation (M))|F}Q{I|L};[YT]{[NV]|[RG]}[KG]Y{M(Oxidation (M))|F}GA{I|L};[YT]E{I|L}RY{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.7622;7.725;6.7111;6.6775;5.967;5.9363;5.2956;5.1157;5.0821;4.8602 +;-;-;-;-;-;-;-;-;- + 3399 NaN NaN 212645.5 NaN 12763 3301 16064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16067 68.888 NaN 308670 35 0 84636 0.264 -1 FIIFVHCHLLL 11 37 471.2701557544852 1410.7886378636556 3 471.2704772949219 MULTI HCD FTMS 0 0 0 16064 56230.40625 0.5067576087829728 5 -0.11438751220703125 3 Carbamidomethyl (C) _FIIFVHC(Carbamidomethyl (C))HLLL_ ENST00000525367.1_1_11:11901789-11906208:+|nuORF 3.072263186857199 0.40544676383124106 1 {I|L}{I|L} 2 -1 25.969 0 0 1.8408 0 0 1166.6138991019295 0 1166.6138991019295 0 25 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.8408 + + 4 NaN NaN 149679.4 NaN 12764 3301 16064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16068 68.891 NaN 130920 35 0 21237 0.261 + 21123 PPEEEPLVL 9 52 511.7737513691753 1021.5329498051506 2 511.7743835449219 MULTI HCD FTMS 0 0 0 16064 75310.9375 1 0 0 4 Unmodified _PPEEEPLVL_ ENSG00000100243|ENST00000352397|CYB5R3;ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3 16.942295170755138 0.21397866736869717 1 T{M(Oxidation (M))|F}V{I|L} 4 7 30.918 0 0 3.0266 0 0 543.270799705275 0 543.270799705275 0 23.839256468719157 0 0 0 0.5 0 0.3494850021680094 0 T{M(Oxidation (M))|F}V{I|L} 3.0266 - 31 NaN NaN 105474.4 NaN 12765 3301 16064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16069 68.894 NaN 401500 35 0 52659 0.261 + -1 LYIMIKKE 8 65 527.3057241962618 1052.5968954593236 2 527.3076782226562 MULTI HCD FTMS 0 0 0 16064 59358.19921875 0.2850133108879342 -5 0.120849609375 5 Oxidation (M) _LYIM(Oxidation (M))IKKE_ REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF 12.531546534597751 0.5015908124873912 1 [Y{I|L}]{I|L}RREG 7 -1 58.02 0 0 5.5121 0 0 0 162.0560701959594 162.0560701959594 32.80349141202521 0 0 0 0 2.3807196863200843 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]{I|L}RREG 5.5121 - 81 + NaN NaN 143766.2 NaN 12766 3301 16064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16071 68.899 NaN 2116400 35 0 457660 0.327 -1 FMFLTLLCLTL 11 75 463.25022747711455 1386.7288530315436 3 463.2505187988281 MULTI HCD FTMS 0 0 0 16070 902331 1 0 0 1 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))FLTLLC(Carbamidomethyl (C))LTL_ ABCD4|p.L41F|1|0.07|ENSG00000119688|chr14:74300184-74300184|C/G|missense_variant 13.51866281300042 0.33929385944539686 1 {I|L}WT{I|L} 4 -1 46.186 0 0 3.3305 0 0 855.423631736525 0 855.423631736525 0 28.226825097560422 0 0 0 1 0 0.4247425010840047 0 {I|L}WT{I|L} 3.3305 - 476 NaN NaN 395152.3 NaN 12767 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16072 68.904 NaN 965820 35 0 131710 0.261 + 15391 LPDGQVITI 9 61 478.27652383782015 954.5384947424403 2 478.276611328125 MULTI HCD FTMS 0 0 0 16070 631082.25 0.786596877237236 -4 0.08802032470703125 2 Unmodified _LPDGQVITI_ ACTG2|p.E242Q|1|0.26|ENSG00000163017|chr2:73914790-73914790|G/C|missense_variant;ENSG00000075624|ENST00000646664|ACTB;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP 51.629811660486645 0.02929079705179888 1 V{I|L}T{I|L} 4 5 48.928 0 0 5.1258 0 0 510.24421140691686 0 510.24421140691686 0 5.498037644757048 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + V{I|L}T{I|L} 5.1258 + + 156 NaN NaN 228463.6 NaN 12768 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16073 68.907 NaN 540350 35 0 73390 0.261 + 25518 SFIVEKPSGMA 11 68 583.2985724083196 1164.5825918834391 2 584.289794921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SFIVEKPSGMA_ REV__ENSG00000041982|ENST00000350763|TNC;REV__nc|ENSG00000041982|P24821-2|TNC;REV__nc|ENSG00000041982|P24821-3|TNC;REV__nc|ENSG00000041982|P24821-4|TNC;REV__nc|ENSG00000041982|P24821-5|TNC;REV__nc|ENSG00000041982|P24821-6|TNC 8.155526934196011 0.3831532958467648 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK 8 -1 57.969 0 0 4.9777 0 0 0 160.07472776157263 160.07472776157263 7.007499097191285 0 0 0 0 0 2 0.7614393726401688 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK 4.9777 - 1592 NaN NaN 159025.4 NaN 12769 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16074 68.911 NaN 503240 35 0 45112 0.261 + 12012 KGTGKPLEVNF 11 90 595.33426061666 NaN 0 595.3220825195312 PEAK HCD FTMS 0 0 0 16070 14210.6494140625 1 0 0 4 Unmodified _KGTGKPLEVNF_ ENSG00000196569|ENST00000421865|LAMA2 18.373094154950223 0.2691433934672084 1 NVA{I|L}H{I|L}P 7 10 32.243 0 0 2.7126 0 0 165.10270235780655 276.0986727350219 441.20137509282847 0 0 0 0 0 0 0 0 0.3807196863200844 NVA{I|L}H{I|L}P 2.7126 - 1142 + NaN NaN 159883.3 NaN 12770 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16075 68.914 NaN 276500 35 0 71098 0.262 + -1 EMYRVKRKELF 11 54 505.6098334802913 1513.807671041074 3 505.94403076171875 MULTI HCD FTMS 0 0 0 16070 60937.9921875 0.30798730186507706 9 -0.25234222412109375 5 Oxidation (M) _EM(Oxidation (M))YRVKRKELF_ REV__ENST00000564980.1_1_16:29830785-29832247:-|nuORF 4.11662792887243 0.40086653484894175 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.222 0 0 1.9303 0 0 1235.648100281544 0 1235.648100281544 0 23.737125054200234 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9303 + + 15 NaN NaN 129912 NaN 12771 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16076 68.917 NaN 188400 35 0 12080 0.261 + -1 VYMPTHLTNN 10 56 603.2851331715118 NaN 0 603.3001098632812 PEAK HCD FTMS 0 0 0 16070 26262.2109375 0.382245471246446 -2 0.03907012939453125 6 Oxidation (M) _VYM(Oxidation (M))PTHLTNN_ REV__ENSG00000197437|ENST00000642119|OR13G1 8.745405648335112 0.33269943387702366 1 P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 -1 16.208 0 0 1.3455 0 0 165.043824837361 532.2117814057596 697.2556062431206 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 1.3455 - 76 + NaN NaN 114856.9 NaN 12772 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16077 68.921 NaN 138740 35 0 6964.1 0.261 + 26687 SYANYFIRL 9 64 573.8012983781484 1145.5880438230968 2 573.802490234375 MULTI HCD FTMS 0 0 0 16070 52305.71875 0.09158984580158236 31 -0.88140869140625 7 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 18.1463463914782 0.20357593197100715 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 5 7 40.252 0 0 3.5136 0 0 505.26402480293126 0 505.26402480293126 0 26.272436660929245 0 0 0 0.75 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 3.5136 - 324 NaN NaN 105329 NaN 12773 3302 16070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16079 68.926 NaN 731230 35 0 114240 0.327 + 29723 VDKQGFYNLF 10 68 615.811306840642 1229.608060748084 2 615.811279296875 MULTI HCD FTMS 0 0 0 16078 284192.3125 0.9686924003139302 1 -0.01958465576171875 1 Unmodified _VDKQGFYNLF_ tr|U7SSG2|U7SSG2_FUSNUHDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01256PE=4SV=1 21.536976647645854 0.3096624038397699 1 {[QV]|[N{I|L}]|[RA]|[KV]}{[WT]|[RM]}[WH]N{I|L}{M(Oxidation (M))|F} 9 5 + 50.366 0 0 4.0961 4.0961 89.682 0 0 0 23.440899702813027 28.481362441963327 23.440899702813027 50.365612383257385 0 0.8252574989159953 1.6989700043360187 1.5 0 {[QV]|[N{I|L}]|[RA]|[KV]}{[WT]|[RM]}[WH]N{I|L}{M(Oxidation (M))|F} 4.0961 - 151 NaN NaN 186530.1 NaN 12774 3303 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16080 68.93 NaN 935370 35 0 121430 0.261 + 13154 KYLPEWTAW 9 108 597.3033861504335 1192.592219367667 2 597.3030395507812 MULTI HCD FTMS 0 0 0 16078 229733.40625 0.46970938338459384 -2 0.04573822021484375 2 Unmodified _KYLPEWTAW_ ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1 76.82478488871298 0.006879825292024087 1 [YK]{I|L}PEWTAW 9 0 + 77.59 0 0 6.506 6.506 92.144 0 0 0 6.879617791072832 54.93862361869317 6.879617791072832 22.260175503147863 0 2.899649864804614 0 0.4247425010840047 0.2742275032520141 + + [YK]{I|L}PEWTAW;{I|L}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EWTAW;{[CT]|[{M(Oxidation (M))|F}G]}A{I|L}{I|L}EWTAW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}EWTAW;{[CT]|[{M(Oxidation (M))|F}G]}ATWE{I|L}{I|L}AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TWE{I|L}{I|L}AW;[YV]NWE{I|L}{I|L}AW;[YK]{I|L}P{[DS]|[MA]|[CV]|TT}[DV]AW;{[CT]|[{M(Oxidation (M))|F}G]}AT[HK]E{I|L}YK;[YK]{I|L}PEWN{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6.506;4.6395;4.458;4.3295;3.9553;3.8268;3.7471;3.5232;3.2147;3.153 +;-;-;-;-;-;-;-;-;- + 2697 NaN NaN 238248.6 NaN 12775 3303 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16081 68.934 NaN 363050 35 0 20298 0.261 + -1 PHAVFPDVSNC 11 74 621.7823641191582 1241.5501753051162 2 621.2742309570312 MULTI HCD FTMS 0 0 0 16078 175491.875 0.21381613139213615 -9 0.22522735595703125 3 Carbamidomethyl (C) _PHAVFPDVSNC(Carbamidomethyl (C))_ REV__ENSG00000099204|ENST00000533213|ABLIM1 5.731851221503515 0.39378271418728467 1 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 8 -1 43.136 0 0 3.4744 0 0 65.02142437251389 0 65.02142437251389 0 21.4363034371533 0 0 0 0 0 0 0.3494850021680094 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.4744 - 283 + NaN NaN 145466 NaN 12776 3303 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16082 68.937 NaN 315300 35 0 34368 0.261 -1 YYTVRMFLD 9 63 612.2900538025082 1222.5655546718162 2 612.2686157226562 MULTI HCD FTMS 0 0 0 16078 55745.87109375 0.4551361995175046 -6 0.13040924072265625 4 Oxidation (M) _YYTVRM(Oxidation (M))FLD_ ENSG00000223601|ENST00000422359|EBLN1 8.593279151180031 0.2858735984551981 1 YYTE 4 -1 32.179 0 0 2.6321 0 0 0 663.325871536707 663.325871536707 -1.1856252710011717 0 -1.1856252710011717 0 0 0 1.5228787452803376 0.7742275032520141 0 YYTE 2.6321 - 307 NaN NaN 141648.7 NaN 12777 3303 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16083 68.94 NaN 248700 35 0 25247 0.261 + 1416 AYQLMTDVF 9 74 552.2575025749194 1102.5004522166387 2 552.2399291992188 MULTI HCD FTMS 0 0 0 16078 47607.08984375 0.18458876683150804 10 -0.27814483642578125 5 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 48.345845343767074 0.03388484103555672 1 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 8 6 51.191 0 0 4.6431 0 0 165.04565627265782 0 165.04565627265782 0 34.01145969223869 0 0 0 0.5 0 0.4247425010840047 0.3807196863200844 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 4.6431 - 257 NaN NaN 136420.5 NaN 12778 3303 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16085 68.945 NaN 455180 35 0 107850 0.327 + 24611 RYLPTGSFPF 10 63 592.8085720950354 1183.6025912568707 2 592.8089599609375 MULTI HCD FTMS 0 0 0 16084 179377.09375 0.03199281545617967 35 -1.002838134765625 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 24.881564428377168 0.27837825820855233 1 GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 5 5 46.186 0 0 3.9021 0 0 630.3462391584 0 630.3462391584 0 38.42141542771227 0 0 0 1.5484550065040281 0 0.4247425010840047 0 + GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.9021 + + 69 NaN NaN 149938.2 NaN 12779 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16086 68.95 NaN 286760 35 0 19424 0.261 + 32251 VYTVVDEMF 9 75 559.7575706348756 1117.5005883365511 2 559.7575073242188 MULTI HCD FTMS 0 0 0 16084 93798.4609375 0.2580422229546835 19 -0.5390396118164062 2 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 112.59319219568356 0.00251905749371435 1 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 73.668 0 0 6.5922 6.5922 93.687 0 0 0 11.17931555708239 11.17931555708239 11.17931555708239 46.18562527100117 0 2.4802046884880937 1.3979400086720375 1.555462187404089 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]V{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.5922;2.4592 +;- + 260 NaN NaN 122814.3 NaN 12780 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16087 68.953 NaN 347640 35 0 77533 0.261 + 17505 LYTILDPKF 9 52 555.3154318841714 1108.6163108351427 2 555.3157958984375 MULTI HCD FTMS 0 0 0 16084 82212.0859375 0.6390845095014439 -2 0.0457611083984375 3 Unmodified _LYTILDPKF_ REV__ENSG00000214652|ENST00000456806|ZNF727 16.942295170755138 0.21397866736869717 1 K{M(Oxidation (M))|F} 2 -1 16.058 0 0 1.4484 0 0 815.4431063447115 0 815.4431063447115 0 0.39590623023812377 0 0 0 0 0 0 0.5 K{M(Oxidation (M))|F} 1.4484 + + 38 + NaN NaN 142642.1 NaN 12781 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16088 68.956 NaN 378340 35 0 37700 0.261 + 12553 KSPEYESLGF 10 81 578.7818840212378 1155.5492151092756 2 579.28515625 MULTI HCD FTMS 0 0 0 16084 120428.859375 0.23197613544333195 11 -0.3072662353515625 4 Unmodified _KSPEYESLGF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;NT5C2|p.F246Lfs*14|1|0.17|ENSG00000076685|chr10:103097321-103097324|AAGA/-|frameshift_variant 16.149105407346934 0.3600587335443843 1 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 8 7 36.737 0 0 3.1792 0 0 235.07317827742298 0 235.07317827742298 0 30.142886447731016 0 0 0 1.3494850021680094 0 0.28872548999643577 0 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 3.1792 - 141 + NaN NaN 152855.3 NaN 12782 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16089 68.96 NaN 207480 35 0 11982 0.261 + 6343 FPFYYEIKM 9 60 627.2987212994602 1252.5828896657204 2 627.2992553710938 MULTI HCD FTMS 0 0 0 16084 115141.484375 0.13698113091104766 41 -1.1562423706054688 5 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 51.41523569358685 0.02959097413485123 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 67.93 0 0 5.4232 5.4232 82.837 0 0 0 1.6330312844383599 1.6330312844383599 1.6330312844383599 1.6330312844383599 0 2.2346368802282015 0 0 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY{M(Oxidation (M))|F}[Q{I|L}]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY{M(Oxidation (M))|F}[K{I|L}]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[Q{I|L}]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[K{I|L}]E 5.4232;5.2928;5.1069;4.6574;4.5671;3.832;3.832;3.2922;3.2922 +;-;+;-;-;-;-;-;- + 469 + NaN NaN 128271.2 NaN 12783 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16090 68.963 NaN 273580 35 0 43916 0.261 -1 MYLKQILYL 9 62 600.838292541434 1199.662032149668 2 600.8388061523438 MULTI HCD FTMS 0 0 0 16084 109839.34375 0.5527858536504046 -7 0.149993896484375 6 Oxidation (M) _M(Oxidation (M))YLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 34.10243960390752 0.09241788333544565 1 {I|L}Y{I|L} 3 -1 35.005 0 0 2.9179 0 0 792.4219837873062 0 792.4219837873062 0 4.815534464597704 0 0 0 0.8807196863200843 0 0 0 {I|L}Y{I|L} 2.9179 + + 41 NaN NaN 134966.9 NaN 12784 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16091 68.966 NaN 331450 35 0 38524 0.261 -1 KYMDVQFDF 9 79 604.7689085503563 NaN 0 604.7681884765625 PEAK HCD FTMS 0 0 0 16084 84917.953125 0.6694107410712988 -10 0.24481201171875 7 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 26.020703789607367 0.146985970127073 1 D{M(Oxidation (M))|F}NH 4 -1 30.918 0 0 2.5604 0 0 165.0807017384953 526.2276705377561 691.3083722762515 0 0 0 0 0 1.3494850021680094 0 0 0 D{M(Oxidation (M))|F}NH 2.5604 - 403 + NaN NaN 136469 NaN 12785 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16092 68.97 NaN 113950 35 0 19583 0.261 + 35064 YTRKHTFL 8 47 533.2950554961899 1064.5755580591797 2 533.3087768554688 MULTI HCD FTMS 0 0 0 16084 22040.626953125 0.3197468421715356 16 -0.45400238037109375 8 Unmodified _YTRKHTFL_ REV__ENSG00000135631|ENST00000486777|RAB11FIP5;REV__ENST00000493523.2_1_2:73302651-73316730:-|nuORF;REV__nc|ENSG00000135631|Q9BXF6|RAB11FIP5 3.944395688203298 0.5361403129012058 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 8.9524 0 0 0.84094 0 0 674.3710804669937 0 674.3710804669937 0 3.4678748622465623 0 0 0 0 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.84094 - 6 NaN NaN 95772.2 NaN 12786 3304 16084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16094 68.975 NaN 299570 35 0 18479 0.327 + 16215 LPVVDFNEM 9 66 540.2575552800864 1078.5005576269727 2 540.2578735351562 MULTI HCD FTMS 0 0 0 16093 116455.4609375 0.8962211622154821 7 -0.20635223388671875 1 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 79.59630418116434 0.005983006570063981 1 VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6 3 73.448 0 0 6.8102 0 0 309.20604140449376 0 309.20604140449376 0 62.99085977895906 0 0 0 2.579689690656103 0 0 0.6505149978319906 + VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6.8102 + + 121 NaN NaN 131224.5 NaN 12787 3305 16093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16095 68.979 NaN 221670 35 0 19052 0.261 -1 IPDEIIDMV 9 48 530.7649280029965 1059.515303072793 2 530.7651977539062 MULTI HCD FTMS 0 0 0 16093 107393.0546875 0.6038798821964458 7 -0.20635223388671875 2 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 32.30548876998284 0.10066689432505688 1 {I|L}D{M(Oxidation (M))|F}V 4 -1 46.186 0 0 4.3591 0 0 567.2902067101998 0 567.2902067101998 0 32.37334396171555 0 0 0 1.4247425010840047 0 0 0 {I|L}D{M(Oxidation (M))|F}V 4.3591 + + 41 NaN NaN 124730 NaN 12788 3305 16093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16096 68.983 NaN 119650 35 0 15968 0.261 + 22041 QGFLIYKPCIW 11 40 456.57910239530906 NaN 0 456.57928466796875 PEAK HCD FTMS 0 0 0 16093 8104.59619140625 0.2795581542216883 -1 0.02950286865234375 3 Unmodified _QGFLIYKPCIW_ ENST00000581335.1_1_17:73224204-73224372:+|nuORF 4.715918219556657 0.3287424415929785 1 VA 2 11 5.5732 0 0 0.61167 0 0 130.74225943952462 607.2728975885374 738.015157028062 0 0 0 0 0 0 0 0 0 VA 0.61167 - 4 + NaN NaN 105287.4 NaN 12789 3305 16093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16097 68.986 NaN 101510 35 0 9629.1 0.261 + 33564 YILGLFMIYL 10 45 623.3533536533602 1244.6921543735202 2 623.3534545898438 MULTI HCD FTMS 0 0 0 16093 34586.97265625 0.6202341156100283 -4 0.09482574462890625 4 Unmodified _YILGLFMIYL_ ENSG00000169359|ENST00000643144|SLC33A1;SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant 12.531546534597751 0.39389615866941496 1 [Y{I|L}]{I|L} 3 7 31.171 0 0 2.5043 0 0 0 852.4387638976056 852.4387638976056 20.713337517843655 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 + [Y{I|L}]{I|L} 2.5043 + + 38 + NaN NaN 93635.8 NaN 12790 3305 16093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16098 68.989 NaN 154150 35 0 9461 0.261 + 21993 QEYPDLIHIY 10 54 645.8221042960425 1289.629655658885 2 645.8220825195312 MULTI HCD FTMS 0 0 0 16093 26478.640625 0.46985455545356225 -2 0.0490875244140625 5 Unmodified _QEYPDLIHIY_ ENSG00000067066|ENST00000340126|SP100;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497|SP100;nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L 14.838274106304384 0.3723198072575719 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YPD{I|L}{I|L} 7 3 14.201 0 0 1.1011 0 0 0 428.19382654361567 428.19382654361567 3.742982472255461 0 0 0 0 0 0 0 0 + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YPD{I|L}{I|L} 1.1011 + + 36 + NaN NaN 119458 NaN 12791 3305 16093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16100 68.994 NaN 561380 35 0 102020 0.327 + 1680 CFGLAMFYLL 10 58 589.2927325572133 1176.5709121812265 2 589.2927856445312 MULTI HCD FTMS 0 0 0 16099 449691.34375 0.7109151667588197 -3 0.0686492919921875 1 Unmodified _CFGLAMFYLL_ ENSG00000111897|ENST00000339697|SERINC1 24.67388899826682 0.2803207841117527 1 {M(Oxidation (M))|F}Y{I|L}{I|L} 4 6 43.686 0 0 3.713 0 0 622.2613392560562 0 622.2613392560562 0 16.238350322034236 0 0 0 1.3252574989159953 0 0 0 + {M(Oxidation (M))|F}Y{I|L}{I|L} 3.713 + + 143 NaN NaN 191498.2 NaN 12792 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16101 68.999 NaN 627120 35 0 50487 0.261 + 29018 TYELRYFQI 9 89 616.8191961951685 1231.623839457137 2 616.81884765625 MULTI HCD FTMS 0 0 0 16099 206029.75 0.2603119090821366 13 -0.36885833740234375 2 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 71.70789743142352 0.008535567138151097 1 [YT]E{I|L}RY{M(Oxidation (M))|F}GA{I|L} 10 2 + 83.3 0 0 6.7634 6.7634 84.695 0 0 0 15.50434735867583 15.50434735867583 15.50434735867583 0.5115252244738144 0 2.25 2 0.4247425010840047 0 [YT]E{I|L}RY{M(Oxidation (M))|F}GA{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RYG{M(Oxidation (M))|F}A{I|L};[YT]KN[VG]Y{M(Oxidation (M))|F}GA{I|L};[YT]KN[VG]Y{M(Oxidation (M))|F}Q{I|L};[YT]KN[VG]YG{M(Oxidation (M))|F}A{I|L};[YT]E{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]KGG[VG]Y{M(Oxidation (M))|F}GA{I|L};[YT]KGG[VG]Y{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RYQ{M(Oxidation (M))|F}{I|L} 6.7634;6.7219;6.1119;5.9189;5.8738;5.2674;5.1813;5.1777;5.1297;4.6283 -;+;-;-;-;-;-;-;-;- + 2845 NaN NaN 177423.8 NaN 12793 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16102 69.002 NaN 542560 35 0 24061 0.261 + 2905 DYSPYFKTI 9 94 567.2791460627044 1132.5437391922087 2 567.2789306640625 MULTI HCD FTMS 0 0 0 16099 186452.1875 0.007562099029929338 222 -6.165428161621094 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 47.7319792270244 0.034743597693959835 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 35.176 0 0 3.1059 0 0 0 764.3989387373837 764.3989387373837 6.447340481202062 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3252574989159953 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.1059 + + 744 NaN NaN 182281 NaN 12794 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16103 69.005 NaN 314280 35 0 24018 0.261 + 25806 SLPEDFYHF 9 69 577.7613398827461 1153.5081268322922 2 578.2775268554688 MULTI HCD FTMS 0 0 0 16099 29487.203125 0.20409268791002527 23 -0.6651077270507812 4 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 8.593279151180031 0.2858735984551981 1 Y{I|L}G{M(Oxidation (M))|F} 4 7 21.692 0 0 1.8805 0 0 655.2626261992829 0 655.2626261992829 0 15.238459951689372 0 0 0 0 0 0 0 Y{I|L}G{M(Oxidation (M))|F} 1.8805 - 57 + NaN NaN 146200.6 NaN 12795 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16104 69.009 NaN 465990 35 0 46744 0.261 + 7577 FYGTFDVHL 9 85 549.7664009674158 1097.5182490016316 2 549.7667846679688 MULTI HCD FTMS 0 0 0 16099 86846.2421875 0.3209001192111465 6 -0.18679046630859375 5 Unmodified _FYGTFDVHL_ ENSG00000090054|ENST00000262554|SPTLC1 67.34385681178166 0.00994769994983633 1 [YN]A{I|L}[PA]TG 8 8 28.597 0 0 2.6056 0 0 0 307.1086606063105 307.1086606063105 6.604582660529044 0 0 0 0 1.0387254899964358 1.3010299956639813 0.3807196863200844 0 [YN]A{I|L}[PA]TG 2.6056 - 833 NaN NaN 162519.7 NaN 12796 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16105 69.012 NaN 152170 35 0 9833.1 0.261 + 28105 TICVLYTTLL 10 57 570.3222740228887 1138.6299951125773 2 570.32275390625 MULTI HCD FTMS 0 0 0 16099 61566.96484375 0.30202575985588437 10 -0.29413604736328125 6 Unmodified _TICVLYTTLL_ nc|ENSG00000288611|P48145|NPBWR1 24.020572477871973 0.2864316864133941 1 KT{I|L}{I|L} 4 7 49.68 0 0 4.3632 0 0 665.3090077130875 0 665.3090077130875 0 34.73197507588033 0 0 0 1 0 0.7742275032520141 0 KT{I|L}{I|L} 4.3632 - 81 NaN NaN 104362.2 NaN 12797 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16106 69.015 NaN 191320 35 0 30373 0.261 + 33085 YDQYKAIF 8 58 524.2591094542278 1046.5036659752554 2 524.7593994140625 MULTI HCD FTMS 0 0 0 16099 80829.4609375 0.8330505281159971 8 -0.23551177978515625 7 Unmodified _YDQYKAIF_ REV__ENSG00000166866|ENST00000300119|MYO1A 10.823927491677226 0.514154816617796 1 {M(Oxidation (M))|F}A{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.8373 0 0 663.3185596293555 0 663.3185596293555 0 13.851518780601921 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}A{M(Oxidation (M))|F} 2.8373 - 126 + NaN NaN 112349.6 NaN 12798 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16107 69.019 NaN 132690 35 0 8241.3 0.261 -1 QYVYWLHML 9 46 634.8103092675826 1267.6060656019652 2 634.8104248046875 MULTI HCD FTMS 0 0 0 16099 36936.39453125 0.1054574268028161 21 -0.5946197509765625 8 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 26.34127834903884 0.13277353811156473 1 [YQ]VYW{I|L}HEM 9 -1 [YQ] + + 35.322 2.8432 0.97663 2.7865 2.7865 59.146 0 0 0 0 29.837513372786475 0 0 0 0.6861818737241735 0 0 0 [YQ]VYW{I|L}HEM 2.7865 - 40 + NaN NaN 103952.5 NaN 12799 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16108 69.022 NaN 122350 35 0 8863.8 0.262 + 16301 LQSQLQQLQ 9 62 543.3022529463852 1084.5899529595704 2 543.3027954101562 MULTI HCD FTMS 0 0 0 16099 64880.09375 0.5296905087346787 -6 0.1338958740234375 9 Unmodified _LQSQLQQLQ_ REV__ENSG00000127603|ENST00000564288|MACF1;REV__ENST00000476350.1_1_1:39768622-39838291:+|nuORF;REV__MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;REV__MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;REV__MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;REV__MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;REV__nc|ENSG00000127603|Q9UPN3-2|MACF1;REV__nc|ENSG00000127603|Q9UPN3-3|MACF1;REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1 10.073929032068715 0.27331982688540024 1 S 1 -1 8.4113 0 0 0.77553 0 0 172.11871380117037 822.4153070956417 994.5340208968121 0 0 0 0 0 0.3807196863200844 0 0 0 S 0.77553 + + 10 + NaN NaN 126214.1 NaN 12800 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16109 69.025 NaN 232550 35 0 7631.6 0.261 -1 SSAGAHKTDCL 11 88 573.7645409467414 NaN 0 573.7642211914062 PEAK HCD FTMS 0 0 0 16099 66539.875 0.6649683388525474 -4 0.09482574462890625 10 Carbamidomethyl (C) _SSAGAHKTDC(Carbamidomethyl (C))L_ ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C 10.150570793230772 0.3133258973391819 1 SQ{M(Oxidation (M))|F}PK 5 -1 15.662 0 0 1.3672 0 0 131.0196986728601 424.17096887760005 555.1906675504601 0 0 0 0 0 0 0 0 0 SQ{M(Oxidation (M))|F}PK 1.3672 - 200 + NaN NaN 133321.5 NaN 12801 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16110 69.029 NaN 408630 35 0 67045 0.261 + -1 EMYRVKRKELF 11 70 505.6098334802913 1513.807671041074 3 505.60992431640625 MULTI HCD FTMS 0 0 0 16099 60875.47265625 0.23520692162230902 10 -0.29413604736328125 11 Oxidation (M) _EM(Oxidation (M))YRVKRKELF_ REV__ENST00000564980.1_1_16:29830785-29832247:-|nuORF 6.623454094837244 0.3898724468670146 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.222 0 0 1.9303 0 0 1235.6484341902337 0 1235.6484341902337 0 23.737125054200234 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9303 + + 25 NaN NaN 151128.6 NaN 12802 3306 16099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16112 69.034 NaN 428020 35 0 35379 0.327 + 22867 QYNTYPIKLF 10 78 643.8425904883727 1285.6706280435453 2 643.8425903320312 MULTI HCD FTMS 0 0 0 16111 161609.234375 0.9193577734153998 1 -0.02632904052734375 1 Unmodified _QYNTYPIKLF_ ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 71.70789743142352 0.01556163018108538 1 K[{I|L}P]YT[HC]{M(Oxidation (M))|F} 8 8 30.693 0 0 2.3873 0 0 278.16319472480626 0 278.16319472480626 0 7.989634511125061 0 0 0 1.0994850021680094 0 0.4247425010840047 0.3054621874040891 K[{I|L}P]YT[HC]{M(Oxidation (M))|F} 2.3873 - 183 NaN NaN 153348.8 NaN 12803 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16113 69.038 NaN 138190 35 0 15344 0.264 + -1 IARLCMTL 8 50 489.2674131905242 976.5202734478485 2 489.2674560546875 MULTI HCD FTMS 0 0 0 16111 77229.453125 0.5354806431940818 1 -0.02632904052734375 2 Carbamidomethyl (C) _IARLC(Carbamidomethyl (C))MTL_ REV__ENSG00000133704|ENST00000256079|IPO8;REV__IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;REV__IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;REV__IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant 19.256988751693697 0.45210759540527456 1 {I|L}AN{I|L}E 5 -1 46.026 0 0 4.7132 0 0 0 433.20758997135005 433.20758997135005 36.29370928348408 0 0 0 0 0.8935078169319297 1.3010299956639813 0.4247425010840047 0 {I|L}AN{I|L}E 4.7132 - 42 + NaN NaN 102405.4 NaN 12804 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16114 69.042 NaN 255690 35 0 22247 0.261 -1 FQGLLFSLGC 10 81 571.2878156800725 1140.561078426945 2 571.7911987304688 MULTI HCD FTMS 0 0 0 16111 83236.921875 0.4542452124300949 13 -0.36545562744140625 3 Carbamidomethyl (C) _FQGLLFSLGC(Carbamidomethyl (C))_ ENSG00000117425|ENST00000372192|PTCH2;nc|ENSG00000117425|Q9Y6C5-2|PTCH2;PTCH2|p.E369Pfs*40|1|0.19|ENSG00000117425|chr1:44829503-44829512|AAGCGTTCTC/-|frameshift_variant 24.020572477871973 0.2864316864133941 1 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 8 -1 53.448 0 0 4.6862 0 0 164.03912291150942 0 164.03912291150942 0 7.311923482988703 0 0 0 0 0 0.5796896906561032 0.6505149978319906 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 4.6862 - 743 + NaN NaN 127248.3 NaN 12805 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16115 69.045 NaN 111100 35 0 15604 0.262 + 31170 VVCFHSQF 8 42 483.7285546703435 NaN 0 483.7286376953125 PEAK HCD FTMS 0 0 0 16111 23278.056640625 0.92320527550962 1 -0.02632904052734375 4 Unmodified _VVCFHSQF_ REV__ENSG00000101868|ENST00000379068|POLA1;REV__ENST00000493342.1_1_X:24745055-24752029:+|nuORF;REV__nc|ENSG00000101868|P09884|POLA1 5.230669730166228 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109258.5 NaN 12806 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16116 69.048 NaN 180110 35 0 19437 0.261 + 1684 CFQYVVLL 8 55 492.76549365764237 983.5164343820848 2 492.7659606933594 MULTI HCD FTMS 0 0 0 16111 5909.25439453125 0.09601789423408012 -2 0.05904388427734375 5 Unmodified _CFQYVVLL_ REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|68;REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|58;REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|16 19.438996006549623 0.45076845602799126 1 VV{I|L}{I|L} 4 -1 25.005 0 0 2.5424 0 0 541.2009874600129 0 541.2009874600129 0 6.025684359364405 0 0 0 1.2302046884880937 0 0 0 VV{I|L}{I|L} 2.5424 + + 24 + NaN NaN 112464.9 NaN 12807 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16117 69.052 NaN 136320 35 0 12036 0.261 + 33565 YILGLFMIYL 10 45 623.3533536533602 1244.6921543735202 2 623.8546142578125 MULTI HCD FTMS 0 0 0 16111 7259.0830078125 0.3021443781105933 2 -0.0625 6 Unmodified _YILGLFMIYL_ ENSG00000169359|ENST00000643144|SLC33A1;SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant 12.531546534597751 0.39389615866941496 1 [Y{I|L}]{I|L} 3 7 32.179 0 0 2.5853 0 0 0 852.4377187074115 852.4377187074115 1.3772686722014527 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0 + [Y{I|L}]{I|L} 2.5853 + + 53 NaN NaN 100752.2 NaN 12808 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16118 69.055 NaN 74574 35 0 14344 0.264 + 30302 VKNNIWYPKF 10 43 436.90787792535576 1307.7018043762673 3 436.90802001953125 MULTI HCD FTMS 0 0 0 16111 19463.19921875 0.11809764853236993 22 -0.6256256103515625 7 Unmodified _VKNNIWYPKF_ ENSG00000135124|ENST00000337233|P2RX4;ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000538417.2_3_12:121659934-121670193:+|nuORF;ENST00000541187.5_1_12:121659934-121666726:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;ENST00000543430.5_1_12:121659934-121670518:+|nuORF;nc|ENSG00000135124|Q99571-2|P2RX4;nc|ENSG00000135124|Q99571-3|P2RX4;P2RX4|p.M361Ifs*13|1|0.33|ENSG00000135124|chr12:121233033-121233034|-/T|frameshift_variant;PTPN1-P2RX4|1|fusion 0.6976657623105312 0.47161084886498755 1 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.6816 0 0 1142.622822908297 0 1142.622822908297 0 17.385606273598313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6816 + + 2 + NaN NaN 87879.5 NaN 12809 3307 16111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16120 69.06 NaN 6577500 35 0 757390 0.327 + 19735 NYAWVYYHL 9 113 614.7929287250602 1227.5713045169202 2 614.79296875 MULTI HCD FTMS 0 0 0 16119 4366749 0.07782452983404725 -3 0.0853729248046875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 1 [YN]AWVYYH{I|L} 9 0 + 123.62 0 0 10.071 10.071 96.067 0 0 0 24.333879024322783 16.478174818886373 16.478174818886373 14.705673779823385 0 2.8494850021680094 1.6989700043360187 0 2.653598431600422 + + [YN]AWVYYH{I|L};[YN]AWVYNW{I|L};[YN]WAVYYH{I|L};[YN]AVWYYH{I|L};[YN]AWVYGGW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYYH{I|L};NYAWVYYH{I|L};[YN]WAVYNW{I|L};[YN]AVWYNW{I|L};NYAWVYN{I|L}W 10.071;8.8727;8.7193;8.7178;8.1226;8.0884;7.7645;7.5214;7.5199;7.4126 +;-;-;-;-;-;+;-;-;- + 9748 NaN NaN 1086713.2 NaN 12810 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16121 69.064 NaN 658060 35 0 80578 0.263 + 9883 IANLEPVSL 9 50 478.27652383782015 954.5384947424403 2 478.276611328125 MULTI HCD FTMS 0 0 0 16119 433894.625 0.5408172343225016 2 -0.055633544921875 2 Unmodified _IANLEPVSL_ ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2 47.748688679222035 0.03472022231463587 1 V{I|L}T{I|L} 4 7 47.607 0 0 4.9875 0 0 510.2432317474155 0 510.2432317474155 0 3.2932859249520305 0 0 0 1.3807196863200843 0 0.4247425010840047 0 V{I|L}T{I|L} 4.9875 - 113 NaN NaN 173665 NaN 12811 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16122 69.068 NaN 1094400 35 0 233400 0.261 -1 FMFLTLLCLTL 11 56 463.25022747711455 1386.7288530315436 3 463.2505187988281 MULTI HCD FTMS 0 0 0 16119 475940.90625 0.5274571152381997 6 -0.16970062255859375 3 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))FLTLLC(Carbamidomethyl (C))LTL_ ABCD4|p.L41F|1|0.07|ENSG00000119688|chr14:74300184-74300184|C/G|missense_variant 9.764250979337305 0.37200617284565546 1 WT{I|L} 3 -1 43.5 0 0 3.1369 0 0 968.5089031150325 0 968.5089031150325 0 25.541134294324124 0 0 0 1.305462187404089 0 0.4247425010840047 0 WT{I|L} 3.1369 - 69 NaN NaN 265293.4 NaN 12812 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16123 69.071 NaN 476400 35 0 65348 0.261 + -1 QDLELLCKF 9 76 583.2985724083196 1164.5825918834391 2 584.2899169921875 MULTI HCD FTMS 0 0 0 16119 20930.685546875 0.5842525494952694 2 -0.055633544921875 4 Carbamidomethyl (C) _QDLELLC(Carbamidomethyl (C))KF_ REV__ENSG00000163554|ENST00000643759|SPTA1;REV__nc|ENSG00000163554|P02549-2|SPTA1 8.745405648335112 0.2847203663274469 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK 8 -1 52.014 0 0 4.4663 0 0 0 160.07639102995316 160.07639102995316 3.1375073993816827 0 0 0 0 0 2 0.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK 4.4663 - 1025 NaN NaN 168081.5 NaN 12813 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16124 69.075 NaN 746740 35 0 84489 0.261 + 27555 TADKLYFVL 9 80 535.299925405595 1068.58529787799 2 535.3002319335938 MULTI HCD FTMS 0 0 0 16119 288804.6875 0.6492694923463234 -3 0.0853729248046875 5 Unmodified _TADKLYFVL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 36.506200033944 0.08138327636155518 1 [TA]AAT[Y{I|L}]{M(Oxidation (M))|F}V{I|L} 10 3 + 58.757 0 0 5.4986 5.4986 90.149 0 0 0 20.339322000954276 16.53212513775344 16.53212513775344 20.339322000954276 0 1.1861818737241734 1.3010299956639813 0.8391368308784531 0 [TA]AAT[Y{I|L}]{M(Oxidation (M))|F}V{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}AT[Y{I|L}]{M(Oxidation (M))|F}V{I|L};[TA]AAT[Y{I|L}]{I|L}[{M(Oxidation (M))|F}V];[{M(Oxidation (M))|F}V]Y[{I|L}T]A[SG]V{I|L};[{M(Oxidation (M))|F}V]Y[{I|L}T]ADK{I|L};[{M(Oxidation (M))|F}V]Y[{I|L}T]{[QS]|[NT]}V{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]A[SG]V{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]ADK{I|L};[Y{M(Oxidation (M))|F}]{I|L}{[TV]|[{I|L}S]}A[SG]V{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]{[QS]|[NT]}V{I|L} 5.4986;3.5952;2.6882;2.2848;2.2268;1.9552;1.9124;1.8544;1.6307;1.5828 -;-;-;-;-;-;-;-;-;- 498 NaN NaN 189553 NaN 12814 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16125 69.078 NaN 1150400 35 0 101090 0.261 + 27676 TALWELHAL 9 86 527.2901238295874 1052.5656947259747 2 527.2902221679688 MULTI HCD FTMS 0 0 0 16119 304545.4375 0.5905146496860056 -3 0.0853729248046875 6 Unmodified _TALWELHAL_ ENSG00000173145|ENST00000371361|NOC3L;NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant 133.70201269244603 0.0003804610509361063 1 [TA]{I|L}WE{I|L}HA{I|L} 9 0 + 90.166 0 0 8.5663 8.5663 96.968 0 0 0 12.206225184280797 12.206225184280797 12.206225184280797 45.04940636348586 0 2.6549471895720984 1.5228787452803376 1.2346368802282017 0 + + [TA]{I|L}WE{I|L}HA{I|L};[W{I|L}][TA]E{I|L}HA{I|L};[TA]{I|L}{[DA]|[EG]}[R{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F};[K{I|L}][NP]EW{I|L}[PG];[Y{I|L}]{I|L}{[{M(Oxidation (M))|F}D]|MM}[RN]{I|L};[W{I|L}]E[TA]{I|L}HA{I|L};[K{I|L}][NP]EW[PG]{I|L};[WE]{I|L}[TA]{I|L}HA{I|L};{[QN]|[E{I|L}]|[KN]}W[TA]{I|L}HA{I|L};[TA][KG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AA{I|L}{M(Oxidation (M))|F} 8.5663;4.2863;4.2669;3.1196;2.5759;2.4899;2.4772;2.2473;2.1286;1.7513 +;-;-;-;-;-;-;-;-;- + 1019 NaN NaN 261413.9 NaN 12815 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16126 69.081 NaN 453230 35 0 111380 0.261 + 29569 VADPVEAVL 9 56 456.75531931945306 911.4960857057062 2 456.7558288574219 MULTI HCD FTMS 0 0 0 16119 134057.46875 0.1542160844713098 -4 0.11487579345703125 7 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 61.357469665136826 0.01568246967499496 1 {[VA]|[{I|L}G]}D[VP]EAV{I|L} 9 0 + 74.415 0 0 8.1641 8.1641 97.093 0 0 0 17.772336398234003 57.42538423561818 17.772336398234003 74.41508427897837 0 2.7302046884880937 1.3010299956639813 0 0 + + {[VA]|[{I|L}G]}D[VP]EAV{I|L} 8.1641 + + 63 NaN NaN 153683.6 NaN 12816 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16127 69.085 NaN 323160 35 0 29490 0.261 + 16216 LPVVDFNEM 9 57 540.2575552800864 1078.5005576269727 2 540.76904296875 MULTI HCD FTMS 0 0 0 16119 36579.0859375 0.5053204027088434 10 -0.2737274169921875 8 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 70.33199760932243 0.0089807860198535 1 VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6 3 64.672 0 0 5.9965 0 0 309.2048512189469 0 309.2048512189469 0 50.692672072328904 0 0 0 2.504432191740108 0 0 0.3252574989159953 + VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 5.9965 + + 110 NaN NaN 137970.3 NaN 12817 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16128 69.088 NaN 635010 35 0 225910 0.262 + 33597 YIRERLLPIF 10 45 440.5990379869836 1318.7752845611508 3 440.9336853027344 MULTI HCD FTMS 0 0 0 16119 57557.2109375 0.11734978866177091 -4 0.11487579345703125 9 Unmodified _YIRERLLPIF_ REV__ENSG00000103043|ENST00000261776|VAC14 5.40270961882225 0.4467063037482923 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.2913 0 0 1040.6139315559 0 1040.6139315559 0 6.9157690561088 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2913 + + 41 NaN NaN 179650.5 NaN 12818 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16129 69.091 NaN 170480 35 0 26877 0.261 + -1 WVLCQGFG 8 47 483.7285546703435 NaN 0 483.7282409667969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _WVLC(Carbamidomethyl (C))QGFG_ REV__ENSG00000078487|ENST00000684423|ZCWPW1;REV__ENST00000490089.1_1_7:99998800-100014813:-|nuORF;REV__nc|ENSG00000078487|Q9H0M4-2|ZCWPW1;REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1;REV__nc|ENSG00000078487|Q9H0M4-4|ZCWPW1;REV__nc|ENSG00000078487|Q9H0M4-5|ZCWPW1;REV__nc|ENSG00000078487|Q9H0M4|ZCWPW1 4.75600775471527 0.38822285293237185 1 V{I|L} 2 -1 7.0783 0 0 0.73317 0 0 186.08537857364598 564.1799410455686 750.2653196192146 0 0 0 0 0 0 0 0 0 V{I|L} 0.73317 + + 4 + NaN NaN 103120.9 NaN 12819 3308 16119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16131 69.096 NaN 2260500 35 0 158200 0.327 + -1 TPSWHSTPAVC 11 131 621.7823641191582 1241.5501753051162 2 621.7831420898438 MULTI HCD FTMS 0 0 0 16130 2113085.25 0.46597797841195465 -5 0.1510467529296875 1 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 1 NYAPCVYY 8 -1 79.436 0 0 6.3981 0 0 0 265.1306453880886 265.1306453880886 32.75465793887857 0 0 0 0 2.9361818737241734 1.5228787452803376 0 0 NYAPCVYY 6.3981 - 66662 + NaN NaN 441698.4 NaN 12820 3309 16130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16132 69.1 NaN 1647100 35 0 132560 0.261 + 2950 DYVEGLRVF 9 104 549.2849270367394 1096.5553011402787 2 549.28515625 MULTI HCD FTMS 0 0 0 16130 887008.5 0.4671613288927099 -3 0.10198211669921875 2 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 118.0683919894846 0.0016252157255221692 1 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 110.2 0 0 10.05 10.05 97.065 0 0 0 21.651051905782495 16.478174818886373 16.478174818886373 21.651051905782495 0 3.2302046884880937 1.6989700043360187 1.6298545532927078 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};[YV]DEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VT[TP]RV{M(Oxidation (M))|F};[YN]A{[SA]|[TG]}G{I|L}[VG]V{M(Oxidation (M))|F};[YN][QT]G{I|L}[VG]V{M(Oxidation (M))|F};[YV]DT[TP]RV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QQG{I|L}[VG]V{M(Oxidation (M))|F};[YN]ANT{I|L}[VG]V{M(Oxidation (M))|F};[YN]A{I|L}{[QS]|[NT]}[VG]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VE[TP]RV{M(Oxidation (M))|F} 10.05;8.0756;7.6096;6.3407;6.0156;5.6352;5.3822;5.2851;4.85;4.6719 +;-;-;-;-;-;-;-;-;- + 2965 NaN NaN 331379.7 NaN 12821 3309 16130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16133 69.104 NaN 622150 35 0 78684 0.261 + 13155 KYLPEWTAW 9 96 597.3033861504335 1192.592219367667 2 597.3029174804688 MULTI HCD FTMS 0 0 0 16130 75337.0859375 0.15403304534294424 4 -0.107513427734375 3 Unmodified _KYLPEWTAW_ ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1 63.960520009940105 0.0120409805053046 1 [YK]{I|L}[EP]WTAW 9 0 + 58.937 0 0 4.9419 4.9419 89.074 0 0 0 5.012262311882765 35.048181095651856 5.012262311882765 18.99797211252192 0 2.5356668758921828 0 0.4247425010840047 0.25 + + [YK]{I|L}[EP]WTAW;{[CT]|[{M(Oxidation (M))|F}G]}AT[HK]E{I|L}YK;{[CT]|[{M(Oxidation (M))|F}G]}AT[HK][Y{I|L}]EK;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[HK]E{I|L}YK;{[CT]|[{M(Oxidation (M))|F}G]}AT[HK][Y{I|L}]A[VS];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[HK][Y{I|L}]A[VS];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[HK]E{I|L}S{[CT]|[{M(Oxidation (M))|F}G]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[HK][Y{I|L}]EK;[YK]{I|L}[EP]W[PG]{[CT]|[{M(Oxidation (M))|F}G]};{[MG]|[TS]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[HA]{I|L}YK 4.9419;3.3489;2.4483;2.3819;1.8836;1.7515;1.6243;1.4813;1.4029;0.28566 +;-;-;-;-;-;-;-;-;- + 1208 NaN NaN 176238.3 NaN 12822 3309 16130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16134 69.107 NaN 485520 35 0 27676 0.261 -1 LCFLCLYF 8 95 560.7624504627199 NaN 0 560.7782592773438 PEAK HCD FTMS 0 0 0 16130 42981.3125 0.3393398672322981 -2 0.0625 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))FLCLYF_ ENST00000301180.9_1_12:51102235-51102331:+|nuORF 17.086550045450526 0.386433553673079 1 PA{M(Oxidation (M))|F}{I|L}[KT]A 7 -1 23.905 0 0 2.1353 0 0 147.00273733217222 241.0648592584594 388.06759659063164 0 0 0 0 0 0 0 0.28872548999643577 0.5796896906561032 PA{M(Oxidation (M))|F}{I|L}[KT]A 2.1353 - 466 + NaN NaN 171952.5 NaN 12823 3309 16130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16135 69.111 NaN 201950 35 0 24730 0.261 + 5180 FFDAELSQM 9 52 552.2397154397356 NaN 0 552.2395629882812 PEAK HCD FTMS 0 0 0 16130 94604.703125 0.7693554224001619 23 -0.6484451293945312 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 41.95555342248728 0.07200381670044957 1 QS{I|L}E 4 8 42.849 0 0 3.8867 0 0 165.04536862769004 477.17637048892817 642.2217391166182 0 0 0 0 0 2.25 0 0.3807196863200844 0 QS{I|L}E 3.8867 - 70 + NaN NaN 127527.3 NaN 12824 3309 16130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16137 69.115 NaN 472030 35 0 28569 0.327 + -1 NYRFLEGCES 10 95 637.7778689754364 1273.5411850176727 2 637.7775268554688 MULTI HCD FTMS 0 0 0 16136 204006.671875 0.3596574848290989 -3 0.08196258544921875 1 Carbamidomethyl (C) _NYRFLEGC(Carbamidomethyl (C))ES_ REV__ENSG00000186230|ENST00000334181|ZNF749 26.268140514670165 0.2654086933305545 1 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWA{M(Oxidation (M))|F}GS 11 -1 + 67.462 0 0 5.2972 5.2972 85.261 0 0 0 24.627502045006416 11.439914418762292 11.439914418762292 7.702789364562058 0 1.113982988912431 1.5228787452803376 0.2614393726401688 0.9049471895720984 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWA{M(Oxidation (M))|F}GS;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{M(Oxidation (M))|F}]AEGS;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWDC(Carbamidomethyl (C))S;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[DS]|[MA]|[CV]|TT}SDGS;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWA[CS]T;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VW{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}T;[YN]AW[SG][KS]A{M(Oxidation (M))|F}GS;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWD[CG]S;[YN]A{[QC]|[C(Carbamidomethyl (C))A]}V[KS]A{M(Oxidation (M))|F}GS;[YN]AW[SG][{M(Oxidation (M))|F}V]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5.2972;4.6923;4.6302;4.2501;4.1995;4.0053;3.9503;3.9106;3.6379;3.5621 -;-;-;-;-;-;-;-;-;- 2003 NaN NaN 166270 NaN 12825 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16138 69.12 NaN 469090 35 0 54714 0.264 + 34047 YNCNFPDDFF 10 78 427.8344783137218 1280.4816055413653 3 427.834716796875 MULTI HCD FTMS 0 0 0 16136 310593.8125 0.3898673117722645 -2 0.055633544921875 2 Unmodified _YNCNFPDDFF_ tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1 1.9063754702782614 0.46521295622613185 1 {M(Oxidation (M))|F} 1 9 13.495 0 0 1.0539 0 0 1115.4029750255434 0 1115.4029750255434 0 5.708253071758875 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0539 + + 19 + NaN NaN 149016.3 NaN 12826 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16139 69.124 NaN 676960 35 0 66285 0.261 + -1 NTFLNGCKACV 11 82 409.52573009437424 1225.5553608833227 3 409.8611145019531 MULTI HCD FTMS 0 0 0 16136 142978.171875 0.3527494797962653 -2 0.055633544921875 3 Carbamidomethyl (C) _NTFLNGCKAC(Carbamidomethyl (C))V_ REV__ENSG00000101493|ENST00000443185|ZNF516;REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant 12.227587767072771 0.3505430386502343 1 NYA[PS]V[WR]S{M(Oxidation (M))|F} 10 -1 + 71.648 0 0 5.8462 5.8462 85.171 0 0 0 58.54934083125073 0.2557626122369072 0.2557626122369072 5.000452295863553 0 1.7302046884880937 2 0.4247425010840047 0.8494850021680094 NYA[PS]V[WR]S{M(Oxidation (M))|F};NYARVPC(Carbamidomethyl (C)){I|L}S{M(Oxidation (M))|F};YNA[PS]V[WR]S{M(Oxidation (M))|F};NYA[WP]YYH{I|L};YNA[WP]YYH{I|L};YNARVPC(Carbamidomethyl (C)){I|L}S{M(Oxidation (M))|F};NYA[{M(Oxidation (M))|F}V]V{[QC]|[C(Carbamidomethyl (C))A]}[WP];NYARVP[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYA[{M(Oxidation (M))|F}V]{[CP]|[EA]}YH{I|L};YNA[{M(Oxidation (M))|F}V]{[CP]|[EA]}YH{I|L} 5.8462;5.4382;5.4173;5.2945;5.1508;5.0093;4.9698;4.7565;4.7055;4.5618 -;-;-;-;-;-;-;-;-;- 764 + NaN NaN 194563.1 NaN 12827 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16140 69.127 NaN 419190 35 0 82672 0.261 + 24612 RYLPTGSFPF 10 59 592.8085720950354 1183.6025912568707 2 592.8087768554688 MULTI HCD FTMS 0 0 0 16136 171286.671875 0.030549847635716176 41 -1.14251708984375 4 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 31.26834338654808 0.2211790902911672 1 [YR]{I|L}[TP][SG]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 10 0 + 18.441 0 0 1.558 1.558 82.052 0 0 0 0.24104976468613515 9.488474775526184 0.24104976468613515 7.76925019195367 0 1.4247425010840047 0 0.4247425010840047 0 + + [YR]{I|L}[TP][SG]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YR]{I|L}[TP][YQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.558;0.90162 +;- + 117 NaN NaN 148616.6 NaN 12828 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16141 69.13 NaN 338930 35 0 42778 0.261 + 10068 IFFENHPYF 9 66 607.287363119328 1212.560173305456 2 607.2881469726562 MULTI HCD FTMS 0 0 0 16136 74190.6484375 0.03378225228642355 43 -1.1975326538085938 5 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 47.748688679222035 0.03472022231463587 1 E{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 4 7 23.812 0 0 1.9638 0 0 676.296678611525 0 676.296678611525 0 10.088643834802156 0 0 0 1 0 0 0 E{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 1.9638 - 271 NaN NaN 148968.5 NaN 12829 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16142 69.133 NaN 724610 35 0 108350 0.261 + 31888 VYNIHLAVNF 10 88 595.3218169221777 1188.6290809111554 2 595.3220825195312 MULTI HCD FTMS 0 0 0 16136 116575.6171875 0.03996093470813761 24 -0.6880569458007812 6 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 41.8396318013385 0.12944265636084 1 AVN{M(Oxidation (M))|F} 4 6 41.855 0 0 3.5213 0 0 739.4017201154312 0 739.4017201154312 0 13.41914236213728 0 0 0 0.7614393726401688 0 0 0.3807196863200844 + AVN{M(Oxidation (M))|F} 3.5213 + + 544 NaN NaN 194719.5 NaN 12830 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16143 69.137 NaN 340450 35 0 31619 0.261 -1 YPEEMIVAL 9 64 540.7683017659411 1079.5220505986822 2 540.7681884765625 MULTI HCD FTMS 0 0 0 16136 100924.796875 0.6538718081901982 1 -0.03607177734375 7 Oxidation (M) _YPEEM(Oxidation (M))IVAL_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2 11.640296217721598 0.25978676193971967 1 VA{I|L} 3 -1 33.94 0 0 3.144 0 0 778.3206679382123 0 778.3206679382123 0 0.7240822678306245 0 0 0 0.9247425010840047 0 0 0 VA{I|L} 3.144 + + 90 NaN NaN 125697.2 NaN 12831 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16144 69.14 NaN 481080 35 0 116830 0.262 -1 NYTICQCDHL 10 60 422.8463620684532 1265.5172568055596 3 422.8468933105469 MULTI HCD FTMS 0 0 0 16136 251301.203125 0.43229525663376195 -2 0.055633544921875 8 Carbamidomethyl (C) _NYTIC(Carbamidomethyl (C))QCDHL_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 5.40270961882225 0.4467063037482923 1 N{I|L} 2 -1 22.474 0 0 1.7759 0 0 1020.3793415826523 0 1020.3793415826523 0 5.484550065040281 0 0 0 0.5 0 0 0 N{I|L} 1.7759 - 12 NaN NaN 149603.5 NaN 12832 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16145 69.143 NaN 326980 35 0 55584 0.261 -1 IPMDDDFQL 9 66 555.2449705155026 1108.475388097805 2 555.2449340820312 MULTI HCD FTMS 0 0 0 16136 76082.390625 0.6406566829909398 1 -0.03607177734375 9 Oxidation (M) _IPM(Oxidation (M))DDDFQL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}Q{I|L} 3 -1 25.802 0 0 2.3277 0 0 702.2543731694827 0 702.2543731694827 0 7.843181179205061 0 0 0 0.2614393726401688 0 0 0 {M(Oxidation (M))|F}Q{I|L} 2.3277 + + 107 NaN NaN 137600.5 NaN 12833 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16146 69.147 NaN 1120100 35 0 289140 0.261 + -1 LEYGDDCICH 10 91 641.2484078849534 1280.4822628367067 2 641.7501220703125 MULTI HCD FTMS 0 0 0 16136 164592.375 0.512180008806419 -2 0.055633544921875 10 2 Carbamidomethyl (C) _LEYGDDC(Carbamidomethyl (C))IC(Carbamidomethyl (C))H_ REV__ENSG00000138829|ENST00000262464|FBN2 3.5964929083625545 0.45626689593999237 1 N{[RE]|[WV]}[DP]AY{I|L} 8 -1 29.729 0 0 2.3217 0 0 304.03795058418126 0 304.03795058418126 0 7.052593986562812 0 0 0 1.25 0 0 0.2614393726401688 N{[RE]|[WV]}[DP]AY{I|L} 2.3217 - 207 NaN NaN 253329.1 NaN 12834 3310 16136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16148 69.152 NaN 431260 35 0 75147 0.327 + 12774 KYDTDFYIL 9 60 589.2927325572133 1176.5709121812265 2 589.2927856445312 MULTI HCD FTMS 0 0 0 16147 284693.1875 0.4500702708193111 2 -0.05197906494140625 1 Unmodified _KYDTDFYIL_ ENSG00000115866|ENST00000264161|DARS1;ENST00000489964.5_1_2:136664888-136672125:-|nuORF;nc|ENSG00000115866|P14868-2|DARS1 23.789781309258295 0.1548179064208189 1 KY{I|L}{I|L} 4 5 39.553 0 0 3.3617 0 0 641.2306385724625 0 641.2306385724625 0 12.105319037595876 0 0 0 1 0 0 0 KY{I|L}{I|L} 3.3617 - 118 NaN NaN 163118.4 NaN 12835 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16149 69.156 NaN 679270 35 0 108760 0.261 + -1 LQDQCLCGCL 10 70 633.7667241159263 1265.5188952986525 2 633.7662353515625 MULTI HCD FTMS 0 0 0 16147 179908.9375 0.9289823228939086 -4 0.11803436279296875 2 3 Carbamidomethyl (C) _LQDQC(Carbamidomethyl (C))LC(Carbamidomethyl (C))GC(Carbamidomethyl (C))L_ REV__ENST00000571989.1_1_17:80551317-80551389:+|nuORF 8.155526934196011 0.43213520406898465 1 WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4 -1 25.005 0 0 1.9759 0 0 731.2961302613463 0 731.2961302613463 0 7.04628427264403 0 0 0 0.5 0 0 0.3807196863200844 WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.9759 - 58 + NaN NaN 186681.7 NaN 12836 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16150 69.159 NaN 382850 35 0 43153 0.261 -1 VYQHDFCGPY 10 59 643.2684849333025 1284.5224169334049 2 643.2694702148438 MULTI HCD FTMS 0 0 0 16147 44547.9296875 0.2916377439659216 1 -0.02927398681640625 3 Carbamidomethyl (C) _VYQHDFC(Carbamidomethyl (C))GPY_ ENSG00000172324|ENST00000302040|OR5A2 12.240655878213236 0.39661705172222156 1 [YN]A[R{M(Oxidation (M))|F}][HS]{M(Oxidation (M))|F}C 9 -1 34.332 0 0 2.6727 0 0 0 156.09121435979333 156.09121435979333 2.661349554219548 0 0 0 0 0.8494850021680094 2 0.5 0 [YN]A[R{M(Oxidation (M))|F}][HS]{M(Oxidation (M))|F}C 2.6727 - 145 NaN NaN 135713.1 NaN 12837 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16151 69.163 NaN 190110 35 0 30955 0.261 -1 MYLKQILYL 9 56 600.838292541434 1199.662032149668 2 600.83837890625 MULTI HCD FTMS 0 0 0 16147 198701.4375 1 0 0 4 Oxidation (M) _M(Oxidation (M))YLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 15.847184025352803 0.2234401846867398 1 {I|L}Y{I|L} 3 -1 35.445 0 0 2.9546 0 0 792.4210375748335 0 792.4210375748335 0 31.54947189572098 0 0 0 0.9247425010840047 0 0 0 {I|L}Y{I|L} 2.9546 + + 58 NaN NaN 115541.3 NaN 12838 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16152 69.166 NaN 287500 35 0 38706 0.262 -1 PPWVCVLL 8 56 492.2738975543269 982.5332421754538 2 492.27398681640625 MULTI HCD FTMS 0 0 0 16147 54766.578125 0.41613351847885605 -2 0.05553436279296875 5 Carbamidomethyl (C) _PPWVC(Carbamidomethyl (C))VLL_ ENST00000434274.2_1_2:109278866-109278920:+|nuORF 17.086550045450526 0.4680768486079041 1 VV{I|L}{I|L} 4 -1 38.443 0 0 3.9127 0 0 540.2169056623062 0 540.2169056623062 0 20.48455006504028 0 0 0 1 0 0 0 VV{I|L}{I|L} 3.9127 - 73 NaN NaN 125210.9 NaN 12839 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16153 69.169 NaN 370130 35 0 42176 0.261 + 3083 EAIAELDTL 9 60 487.7554970634691 973.4964411937382 2 487.75518798828125 MULTI HCD FTMS 0 0 0 16147 152012.453125 0.524253296629987 -1 0.03607177734375 6 Unmodified _EAIAELDTL_ ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;YWHAZ|p.S207I|1|0.43|ENSG00000164924|chr8:100924013-100924013|C/A|missense_variant 115.6920309560759 0.002013163348980568 1 {[CP]|[EA]}{I|L}AE{I|L}DT{I|L} 9 0 + 71.269 0 0 7.321 7.321 89.269 0 0 0 8.543804089302398 16.478174818886373 8.543804089302398 8.543804089302398 0 1.7614393726401687 0 1.7034021960761265 0 + + {[CP]|[EA]}{I|L}AE{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}[PS]{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[PS]DT{I|L};{[WN]|[YH]}{[NV]|[RG]}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}EA{[CP]|[EA]}{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}EA{I|L}{[CP]|[EA]};[H{I|L}][HA][PA]DT{I|L} 7.321;6.4433;5.1579;4.6471;3.585;2.8847;1.9451 +;-;-;-;-;-;- + 183 NaN NaN 133948.8 NaN 12840 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16154 69.173 NaN 133810 35 0 10112 0.261 + -1 KKMEVAYL 8 62 499.27496838232213 NaN 0 499.2748107910156 PEAK HCD FTMS 0 0 0 16147 109389.1328125 0.762653095083691 2 -0.05197906494140625 7 Oxidation (M) _KKM(Oxidation (M))EVAYL_ REV__ENSG00000114021|ENST00000394140|NIT2;REV__ENST00000465368.5_1_3:100064894-100074109:+|nuORF 6.354104778181461 0.38822285293237185 1 Y 1 -1 5.4846 0 0 0.55036 0 0 132.1723775871638 698.2823580377561 830.45473562492 0 0 0 0 0 0 0 0 0 Y 0.55036 + + 45 + NaN NaN 106727.1 NaN 12841 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16155 69.176 NaN 372180 35 0 55322 0.261 + 13977 KYSFLPYQL 9 68 579.8129347360565 1157.611316538913 2 579.8126220703125 MULTI HCD FTMS 0 0 0 16147 48833.96875 0.19879505810736167 -1 0.03607177734375 8 Unmodified _KYSFLPYQL_ ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR 23.789781309258295 0.1548179064208189 1 {I|L}PYQ{I|L} 5 4 37.039 0 0 3.1996 0 0 525.2562733380875 0 525.2562733380875 0 29.987737688117235 0 0 0 0.9247425010840047 0 0 0 + {I|L}PYQ{I|L} 3.1996 + + 246 NaN NaN 137729.9 NaN 12842 3311 16147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16157 69.181 NaN 3543600 35 0 212780 0.327 -1 YNAPTDHGLCI 11 133 630.7877655450172 1259.5609781568344 2 630.7880249023438 MULTI HCD FTMS 0 0 0 16156 3310840 1 0 0 1 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 1 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GYYH{I|L} 10 -1 + 87.232 0 0 6.9256 6.9256 87.14 0 0 0 5.385379826259054 51.58281511327944 5.385379826259054 5.161413668932568 0 2.3807196863200843 1.6989700043360187 0.7951140161145329 1.5911290632962718 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GYYH{I|L};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}VNPDH{I|L};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}VD[NP]H{I|L};[YN]AWVYPANY;[YN]AWVYPSN{M(Oxidation (M))|F};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}VY{[RE]|[WV]}Q;[YN]A{[MS]|[{M(Oxidation (M))|F}A]}VGGPDH{I|L};[YN]A{[MS]|[{M(Oxidation (M))|F}A]}V[PG]GDH{I|L};[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GNPDH{I|L};[YN]AWVYNAPY 6.9256;6.5158;6.1922;6.0723;5.9857;5.9641;5.7911;5.7611;5.5869;5.5513 -;-;-;-;-;-;-;-;-;- 41573 NaN NaN 493064.5 NaN 12843 3312 16156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16158 69.185 NaN 1002100 35 0 266810 0.261 + 9847 HYSPIYLSF 9 102 563.7816228379162 NaN 0 563.7922973632812 PEAK HCD FTMS 0 0 0 16156 128182.3359375 1 0 0 2 Unmodified _HYSPIYLSF_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 32.30548876998284 0.10480114246275442 1 T{M(Oxidation (M))|F}S[VP]KG 7 7 17.981 0 0 1.5975 0 0 205.0716773534828 201.06736169986564 406.1390390533485 0 0 0 0 0 0 0 0.3054621874040891 0.4247425010840047 T{M(Oxidation (M))|F}S[VP]KG 1.5975 - 411 + NaN NaN 246590.2 NaN 12844 3312 16156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16159 69.189 NaN 723940 35 0 66810 0.263 + 3721 EMDARLHEDH 10 82 418.18327570665025 1251.5279977201508 3 418.18328857421875 MULTI HCD FTMS 0 0 0 16156 218829.09375 1 0 0 3 Unmodified _EMDARLHEDH_ ENSG00000178896|ENST00000316052|EXOSC4 9.38312468134398 0.42334543440173333 1 NYA 3 9 44.724 0 0 3.5735 0 0 0 900.3616950579625 900.3616950579625 28.29689690656103 0 0 0 0 0.6307196863200843 2 0 0 NYA 3.5735 - 102 + NaN NaN 197138.2 NaN 12845 3312 16156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16160 69.192 NaN 511670 35 0 27962 0.261 + 17202 LYNDHVVQF 9 106 567.7807436220404 NaN 0 567.779541015625 PEAK HCD FTMS 0 0 0 16156 186828.53125 1 0 0 4 Unmodified _LYNDHVVQF_ REV__ENSG00000113263|ENST00000422843|ITK;REV__ENST00000519402.5_1_5:156607865-156667213:+|nuORF;REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF 18.1463463914782 0.1998403495282098 1 NS 2 -1 11.766 0 0 1.038 0 0 165.0726433946682 764.3995391050066 929.4721824996748 0 0 0 0 0 0 0 0.3807196863200844 0 NS 1.038 - 150 + NaN NaN 164389.3 NaN 12846 3312 16156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16161 69.195 NaN 168200 35 0 21915 0.262 + 8104 GLDDALFAL 9 59 467.7464075134455 NaN 0 467.7460632324219 PEAK HCD FTMS 0 0 0 16156 226648.46875 1 0 0 5 Unmodified _GLDDALFAL_ REV__ENSG00000165233|ENST00000375464|CARD19;REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF;REV__ENST00000468781.5_1_9:95858594-95875386:+|nuORF 20.453626601364224 0.18435338882370536 1 AD 2 -1 19.464 0 0 2.0851 0 0 99.06531150950975 645.3239826900235 744.3892941995333 0 0 0 0 0 1 0 0 0 AD 2.0851 - 22 + NaN NaN 109495.6 NaN 12847 3312 16156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16162 69.199 NaN 198980 35 0 25352 0.261 -1 KYMDVQFDF 9 72 604.7689085503563 NaN 0 604.769287109375 PEAK HCD FTMS 0 0 0 16156 52889.41796875 0.41692884925257795 -2 0.06534576416015625 6 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 34.93206674587334 0.09452846457412575 1 D{M(Oxidation (M))|F}NK 4 -1 29.984 0 0 2.4831 0 0 165.08221506760793 535.1844576471311 700.2666727147391 0 0 0 0 0 1.3252574989159953 0 0 0 D{M(Oxidation (M))|F}NK 2.4831 - 174 + NaN NaN 112664.6 NaN 12848 3312 16156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16164 69.203 NaN 51520000 35 0 6094000 0.327 + 19736 NYAWVYYHL 9 119 614.7929287250602 1227.5713045169202 2 614.79345703125 MULTI HCD FTMS 0 0 0 16163 51303992 0.9143436126073932 2 -0.0487060546875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 1 [YN]AWVYYH{I|L} 9 0 + 123.11 0 0 10.029 10.029 95.875 0 0 0 27.231423671422917 16.478174818886373 16.478174818886373 14.00560227418346 0 2.8494850021680094 1.6989700043360187 0 2.6025684359364405 + + [YN]AWVYYH{I|L};[YN]AVWYYH{I|L};[YN]AWVYNW{I|L};[YN]AWVYHY{I|L};[YN]WAVYYH{I|L};[YN]AWVYGGW{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYYH{I|L};[YN]AVWYNW{I|L};NYAWVYYH{I|L};[YN]AVWYHY{I|L} 10.029;8.8882;8.8566;8.8258;8.8212;8.1065;7.8108;7.7157;7.6856;7.6849 +;-;-;-;-;-;-;-;+;- + 28900 NaN NaN 1245551.8 NaN 12849 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16165 69.208 NaN 1209700 35 0 150270 0.264 -1 LEFWMIACV 9 98 409.52573009437424 1225.5553608833227 3 409.52557373046875 MULTI HCD FTMS 0 0 0 16163 276752.75 0.5300149714575171 1 -0.0260162353515625 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))LEFWM(Oxidation (M))IAC(Carbamidomethyl (C))V_ ENST00000354619.9_1_1:236433215-236433290:-|nuORF 16.149105407346934 0.22083165093524068 1 YNA[WP]YYH{I|L} 9 -1 + 67.89 0 0 5.5396 5.5396 84.308 0 0 0 52.661414376112546 8.226825097560422 8.226825097560422 4.3312325961992 0 1.610924374808178 2 0 0 YNA[WP]YYH{I|L};YNA[{M(Oxidation (M))|F}V]{[CP]|[EA]}YH{I|L};YNA[PA]D[WR]S{M(Oxidation (M))|F};YNAR[SG][QT]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YNA[{M(Oxidation (M))|F}V]TG[VP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YNAR[{M(Oxidation (M))|F}T][VP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YNA[{M(Oxidation (M))|F}V][WP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YNAR[WP][VS]S{M(Oxidation (M))|F};YNAK[DG][QT]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YNAK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 5.5396;5.1862;4.5055;4.4771;4.4416;4.3881;4.2616;4.0096;3.9427;3.9151 -;-;-;-;-;-;-;-;-;- 1688 + NaN NaN 269423.7 NaN 12850 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16166 69.211 NaN 596660 35 0 110610 0.261 -1 FMFLTLLCLTL 11 45 463.25022747711455 1386.7288530315436 3 463.25067138671875 MULTI HCD FTMS 0 0 0 16163 234945.671875 0.26037637172501 11 -0.30655670166015625 3 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))FLTLLC(Carbamidomethyl (C))LTL_ ABCD4|p.L41F|1|0.07|ENSG00000119688|chr14:74300184-74300184|C/G|missense_variant 13.51866281300042 0.33929385944539686 1 WT{I|L} 3 -1 38.698 0 0 2.7906 0 0 968.5088701917922 0 968.5088701917922 0 34.09379381312206 0 0 0 0.8252574989159953 0 0.4247425010840047 0 WT{I|L} 2.7906 - 17 NaN NaN 172592.3 NaN 12851 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16167 69.215 NaN 789410 35 0 89497 0.261 + 14371 LEEQHHQAMQ 10 93 625.7838610241098 1249.5531691150195 2 625.7839965820312 MULTI HCD FTMS 0 0 0 16163 245469.984375 0.6003967643401428 1 -0.0260162353515625 4 Unmodified _LEEQHHQAMQ_ ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3 26.268140514670165 0.2654086933305545 1 [YN]AW{[{M(Oxidation (M))|F}H]|[RQ]}YH 8 9 65.252 0 0 5.2221 0 0 0 128.07561116058324 128.07561116058324 29.925296040778157 0 0 0 0 2.2614393726401687 2 0 1.024227503252014 [YN]AW{[{M(Oxidation (M))|F}H]|[RQ]}YH 5.2221 - 1118 NaN NaN 201396.7 NaN 12852 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16168 69.218 NaN 463320 35 0 55358 0.261 + 1159 AYLESFYKF 9 76 584.289645907993 1166.5647388827858 2 584.2899169921875 MULTI HCD FTMS 0 0 0 16163 238614.828125 0.012941808551725888 55 -1.5220794677734375 5 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 79.59630418116434 0.005983006570063981 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 96.71 0 0 8.2901 8.2901 91.07 0 0 0 24.473761927975417 77.02484585515883 24.473761927975417 9.119543704721593 0 3.1237125054200234 2 0.6421590589602533 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}[DP]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YKE{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[RH]E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}C{I|L} 8.2901;7.5084;5.7071;5.4623;5.3495;5.2555;5.1556;5.113;4.9182;4.8364 +;-;-;-;-;-;-;-;-;- + 1086 NaN NaN 152806.1 NaN 12853 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16169 69.221 NaN 654850 35 0 48738 0.261 + 27677 TALWELHAL 9 84 527.2901238295874 1052.5656947259747 2 527.2915649414062 MULTI HCD FTMS 0 0 0 16163 225497.71875 0.437240851433375 2 -0.0487060546875 6 Unmodified _TALWELHAL_ ENSG00000173145|ENST00000371361|NOC3L;NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant 85.27202061508552 0.004649858145912257 1 [TA]{I|L}WE{I|L}HA{I|L} 9 0 + 80.918 0 0 7.6877 7.6877 95.508 0 0 0 8.68440000316717 8.68440000316717 8.68440000316717 43.170693164140125 0 2.6989700043360187 1.3979400086720375 0.566901560044258 0 + + [TA]{I|L}WE{I|L}HA{I|L};{[RE]|[WV]}[VS]E{I|L}HA{I|L};[W{I|L}][TA]E{I|L}HA{I|L};[TA][KG][WY]KS{I|L} 7.6877;3.5862;3.25;1.6505 +;-;-;- + 648 NaN NaN 181254.8 NaN 12854 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16170 69.225 NaN 275070 35 0 19755 0.262 + 1687 CFRSSDNMWK 10 64 425.18670654296875 NaN 0 425.18670654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _CFRSSDNMWK_ REV__ENST00000300417.10_1_9:130248035-130251759:+|nuORF 3.944395688203298 0.33680843299986807 1 Y 1 -1 6.9897 0 0 0.82456 0 0 253.40788470948877 428.1934680903805 681.6013527998693 0 0 0 0 0 0 0 0 0 Y 0.82456 - 17 + NaN NaN 121134.5 NaN 12855 3313 16163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16172 69.23 NaN 697600 35 0 191760 0.327 + 29570 VADPVEAVL 9 56 456.75531931945306 911.4960857057062 2 456.755615234375 MULTI HCD FTMS 0 0 0 16171 556744.0625 0.6404633040738372 2 -0.058624267578125 1 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 54.773552608820026 0.024892918755467567 1 {[VA]|[{I|L}G]}D[VP]EAV{I|L} 9 0 + 74.09 0 0 8.1284 8.1284 97.019 0 0 0 19.621892823592972 57.10077508221467 19.621892823592972 74.09047512557486 0 2.4247425010840047 1.3979400086720375 0 0 + + {[VA]|[{I|L}G]}D[VP]EAV{I|L} 8.1284 + + 63 NaN NaN 193147.5 NaN 12856 3314 16171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16173 69.234 NaN 1095900 35 0 429200 0.261 + 33598 YIRERLLPIF 10 61 440.5990379869836 1318.7752845611508 3 440.59918212890625 MULTI HCD FTMS 0 0 0 16171 203515.875 0.34182191354742636 2 -0.058624267578125 2 Unmodified _YIRERLLPIF_ REV__ENSG00000103043|ENST00000261776|VAC14 5.40270961882225 0.4467063037482923 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.2579 0 0 1040.6133077132095 0 1040.6133077132095 0 22.302046884880937 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2579 + + 86 NaN NaN 252883.8 NaN 12857 3314 16171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16174 69.237 NaN 632720 35 0 44618 0.261 + 27678 TALWELHAL 9 89 527.2901238295874 1052.5656947259747 2 527.2899780273438 MULTI HCD FTMS 0 0 0 16171 193777.46875 0.37573517769724313 3 -0.077972412109375 3 Unmodified _TALWELHAL_ ENSG00000173145|ENST00000371361|NOC3L;NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant 85.27202061508552 0.004649858145912257 1 [TA]{I|L}WE{I|L}HA{I|L} 9 0 + 77.207 0 0 7.3351 7.3351 94.381 0 0 0 3.112431371158735 3.112431371158735 3.112431371158735 31.22994718840225 0 2.6861818737241734 1.3979400086720375 0.3054621874040891 0 + + [TA]{I|L}WE{I|L}HA{I|L};[TA]{I|L}{[DA]|[EG]}[R{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F};[W{I|L}][TA]E{I|L}HA{I|L};[TA][KG][WY]KS{I|L} 7.3351;4.3681;3.7329;1.3209 +;-;-;- + 905 NaN NaN 180993.5 NaN 12858 3314 16171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16175 69.241 NaN 409250 35 0 66899 0.261 + 18182 MPDLDLHL 8 65 477.24156791417727 952.4685828951546 2 477.2414855957031 MULTI HCD FTMS 0 0 0 16171 46807.16796875 0.21104304620248673 1 -0.0226898193359375 4 Unmodified _MPDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 42.09456458481378 0.20402248593209013 1 MPD{I|L}D{I|L}[H{I|L}] 8 0 + 59.168 0 0 6.2121 6.2121 85.376 0 0 0 35.91973020644261 3.979400086720375 3.979400086720375 4.2216751192405155 0 1.5114393726401687 1.3979400086720375 0 0 + + MPD{I|L}D{I|L}[H{I|L}];MPD{I|L}DH{I|L}{I|L};MPD{I|L}VE[H{I|L}];MK[YK][PA]{[ES]|[DT]|[{I|L}C]} 6.2121;5.7688;5.3711;0.3859 +;-;-;- + 305 + NaN NaN 135616 NaN 12859 3314 16171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16176 69.244 NaN 888740 35 0 138290 0.261 + 31889 VYNIHLAVNF 10 79 595.3218169221777 1188.6290809111554 2 595.80712890625 MULTI HCD FTMS 0 0 0 16171 26418.19921875 0.012184170253678158 27 -0.7772674560546875 5 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 36.12702656103203 0.1790159924230938 1 VN{M(Oxidation (M))|F} 3 7 29.213 0 0 2.4577 0 0 810.4396501202217 0 810.4396501202217 0 14.798187706630156 0 0 0 0.7302046884880937 0 0 0.3494850021680094 + VN{M(Oxidation (M))|F} 2.4577 + + 293 NaN NaN 234430.7 NaN 12860 3314 16171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16177 69.247 NaN 339510 35 0 30886 0.264 + 19976 NYGYRHNAEE 10 79 418.18327570665025 1251.5279977201508 3 418.18359375 MULTI HCD FTMS 0 0 0 16171 135014.078125 0.6169841304522607 2 -0.058624267578125 6 Unmodified _NYGYRHNAEE_ ENSG00000187664|ENST00000291481|HAPLN4;HAPLN4|p.R261H|1|0.44|ENSG00000187664|chr19:19258558-19258558|C/T|missense_variant 8.745405648335112 0.42901288225909884 1 NY 2 8 38.443 0 0 3.0717 0 0 0 971.4006396050016 971.4006396050016 22.206225184280797 0 0 0 0 0.3494850021680094 2 0 0 + NY 3.0717 + + 31 + NaN NaN 130368.2 NaN 12861 3314 16171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16179 69.252 NaN 5916400 35 0 422870 0.327 + -1 TPSWHSTPAVC 11 131 621.7823641191582 1241.5501753051162 2 621.7822265625 MULTI HCD FTMS 0 0 0 16178 3092861.5 0.6820384313780836 1 -0.0359344482421875 1 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 1 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 89.72 0 0 7.2265 7.2265 92.665 0 0 0 12.38315573793031 10.880456295278407 10.880456295278407 16.0515567098831 0 2.274227503252014 1.5228787452803376 1.1861818737241734 1.305462187404089 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCVD[NP]H{I|L};[YN]APCVGERAY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NW[{M(Oxidation (M))|F}E]YH{I|L};NYAW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]APCVDARAY;[YN]APCVR{[DA]|[EG]}AY;[YN]APCVD{I|L}NHP;[YN]APCRE{I|L}NY 7.2265;5.9336;5.8609;5.7346;5.6886;5.613;5.4065;5.3617;5.2883;5.2804 -;-;-;-;-;-;-;-;-;- 90212 NaN NaN 514568.8 NaN 12862 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16180 69.257 NaN 2189100 35 0 171980 0.261 + 2951 DYVEGLRVF 9 110 549.2849270367394 1096.5553011402787 2 549.2852172851562 MULTI HCD FTMS 0 0 0 16178 858119.75 0.4519464726201383 3 -0.08133697509765625 2 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 129.77232118876745 0.0006187813247758304 1 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 112.22 0 0 10.234 10.234 97.521 0 0 0 24.82393759822969 16.478174818886373 16.478174818886373 24.82393759822969 0 3.305462187404089 1.6989700043360187 1.9604093769761874 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};[YV]DEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VT[TP]RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VV{[CP]|[EA]}RV{M(Oxidation (M))|F};[YN]A{[SA]|[TG]}G{I|L}[VG]V{M(Oxidation (M))|F};[YN][QT]G{I|L}[VG]V{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V[QA][KQ]V{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VQQ[KA]V{M(Oxidation (M))|F};[YN]ANT{I|L}[VG]V{M(Oxidation (M))|F};[YV]DT[TP]RV{M(Oxidation (M))|F} 10.234;7.9702;7.5703;7.2957;6.6746;6.1309;5.6608;5.566;5.4753;5.3064 +;-;-;-;-;-;-;-;-;- + 9035 NaN NaN 415031.1 NaN 12863 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16181 69.26 NaN 840480 35 0 80672 0.263 + 34048 YNCNFPDDFF 10 92 427.8344783137218 1280.4816055413653 3 427.834716796875 MULTI HCD FTMS 0 0 0 16178 148363.78125 0.1862309750948622 3 -0.08133697509765625 3 Unmodified _YNCNFPDDFF_ tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1 3.3196427980023873 0.4577323075863651 1 [YN]CWG 5 7 27.664 0 0 2.1604 0 0 0 654.2452523521653 654.2452523521653 6.237125054200234 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [YN]CWG 2.1604 - 214 NaN NaN 216012.8 NaN 12864 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16182 69.263 NaN 806750 35 0 48018 0.261 + 34049 YNCQEPPSSHI 11 106 637.7778689754364 1273.5411850176727 2 637.7774658203125 MULTI HCD FTMS 0 0 0 16178 341962.5625 0.6028694748268929 2 -0.0552825927734375 4 Unmodified _YNCQEPPSSHI_ ENSG00000114316|ENST00000265560|USP4;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4 31.26834338654808 0.19318467762437158 1 [YN]APYVCTAE 10 9 57.417 0 0 4.5084 0 0 0 159.03072584023553 159.03072584023553 16.591918739416748 0 0 0 0 1.863364334130467 1.5228787452803376 0.7302046884880937 0.3054621874040891 [YN]APYVCTAE 4.5084 - 4676 NaN NaN 212430.7 NaN 12865 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16183 69.267 NaN 614030 35 0 35813 0.261 + 18102 MPAFIFEHI 9 105 560.7777571083583 1119.5409612835165 2 560.7785034179688 MULTI HCD FTMS 0 0 0 16178 319218 1 0 0 5 Oxidation (M) _M(Oxidation (M))PAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 97.07464715276575 0.004340583992084827 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L} 9 0 + 65.614 0 0 5.8608 5.8608 89.095 0 0 0 10.642492736872597 49.41630954681237 10.642492736872597 11.478174818886373 0 2.3807196863200843 0 1.0994850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};[WE]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{M(Oxidation (M))|F}PA[{I|L}P]YYH{I|L};{M(Oxidation (M))|F}PA[KT]{I|L}{NN|[MP]|[D{I|L}]|[EV]}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}EH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}[EP][RK]E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}P]M{M(Oxidation (M))|F}EH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}[EP][PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}EEH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[VG]QQD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.8608;4.8356;3.4016;3.1322;2.6251;2.4502;1.595;1.5057;0.9275;0.70367 +;-;-;-;-;-;-;-;-;- + 1289 NaN NaN 178410.7 NaN 12866 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16184 69.27 NaN 1138000 35 0 234260 0.261 + 27556 TADKLYFVL 9 83 535.299925405595 1068.58529787799 2 535.3005981445312 MULTI HCD FTMS 0 0 0 16178 143045.921875 0.3215853381119137 4 -0.11065673828125 6 Unmodified _TADKLYFVL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 31.26834338654808 0.10542797264966089 1 {M(Oxidation (M))|F}V{I|L} 3 6 32.505 0 0 3.0419 0 0 691.3538966974473 0 691.3538966974473 0 2.5664608273916123 0 0 0 0.6307196863200843 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.0419 + + 151 NaN NaN 260404.6 NaN 12867 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16185 69.273 NaN 834440 35 0 124300 0.261 + 31890 VYNIHLAVNF 10 85 595.3218169221777 1188.6290809111554 2 595.804931640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 32.78568957990786 0.20801173326193015 1 CVN{M(Oxidation (M))|F} 4 7 30.438 0 0 2.5608 0 0 707.4272938459 0 707.4272938459 0 13.526909627198403 0 0 0 1.079689690656103 0 0 0 CVN{M(Oxidation (M))|F} 2.5608 - 318 NaN NaN 217433.1 NaN 12868 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16186 69.277 NaN 332350 35 0 37335 0.261 + 6228 FPESSAIEAL 10 58 532.2690101731423 1062.5234674130845 2 532.2689819335938 MULTI HCD FTMS 0 0 0 16178 80243.15625 0.33657886120207176 -8 0.218719482421875 8 Unmodified _FPESSAIEAL_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-9|SON 27.628801355627647 0.2527626205058048 1 NA{I|L}[NG]EA{I|L} 8 7 52.194 0 0 4.9123 0 0 262.1340504376969 0 262.1340504376969 0 12.552769148453073 0 0 0 1 0 0 0.8829131673969606 NA{I|L}[NG]EA{I|L} 4.9123 - 255 NaN NaN 144471.2 NaN 12869 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16187 69.28 NaN 301420 35 0 29214 0.261 -1 0 63 478.27652383782015 954.5384947424403 2 478.2766418457031 MULTI HCD FTMS 0 0 0 16178 107372.9453125 0.1338323546298078 9 -0.25785064697265625 9 NaN NaN 1 V{I|L}T{I|L} 4 -1 32.273 0 0 3.381 0 0 510.24434096504064 0 510.24434096504064 0 16.798260741381682 0 0 0 0.8494850021680094 0 0.28872548999643577 0 V{I|L}T{I|L} 3.381 - 182 NaN NaN 133399.5 NaN 12870 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16188 69.283 NaN 196100 35 0 26645 0.261 + 10700 IPWLEWLA 8 66 514.2860618556318 NaN 0 514.2857666015625 PEAK HCD FTMS 0 0 0 16178 37004.30859375 0.47173871148459384 1 -0.0359344482421875 10 Unmodified _IPWLEWLA_ ENSG00000173825|ENST00000309880|TIGD3 5.760428011301431 0.38822285293237185 1 A{[TV]|[{I|L}S]}E 4 6 8.9845 0 0 0.87521 0 0 132.09749905855955 491.24009119205317 623.3375902506127 0 0 0 0 0 0 0 0.7302046884880937 0 A{[TV]|[{I|L}S]}E 0.87521 - 19 + NaN NaN 113372.1 NaN 12871 3315 16178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16190 69.288 NaN 466060 35 0 109000 0.326 -1 NYTICQCDHL 10 56 422.8463620684532 1265.5172568055596 3 422.8467102050781 MULTI HCD FTMS 0 0 0 16189 250958.8125 0.43170626684277497 4 -0.11080169677734375 1 Carbamidomethyl (C) _NYTIC(Carbamidomethyl (C))QCDHL_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 12.174745833636585 0.39723355204102767 1 {I|L} 1 -1 20.485 0 0 1.6187 0 0 1134.4227876666907 0 1134.4227876666907 0 4.030899869919438 0 0 0 0.5 0 0 0 {I|L} 1.6187 + + 21 + NaN NaN 159467.7 NaN 12872 3316 16189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16191 69.293 NaN 1794700 35 0 433370 0.261 + 24425 RYLDEINLL 9 93 574.8189054301534 1147.6232579271068 2 575.3204956054688 MULTI HCD FTMS 0 0 0 16189 572197.9375 0.06123647805506594 -7 0.1921539306640625 2 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 70.33199760932243 0.0089807860198535 1 {I|L}HDE{I|L}N{I|L}{I|L} 8 3 74.378 0 0 6.4811 0 0 182.105760642775 0 182.105760642775 0 35.20548809687184 0 0 0 1.8494850021680094 0 0.805462187404089 0.3494850021680094 {I|L}HDE{I|L}N{I|L}{I|L} 6.4811 - 1305 NaN NaN 355493.5 NaN 12873 3316 16189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16192 69.296 NaN 218640 35 0 22062 0.261 + 26926 SYLELVKSL 9 59 526.3052580058903 1050.5959630785806 2 526.3048706054688 MULTI HCD FTMS 0 0 0 16189 179618.71875 1 0 0 3 Unmodified _SYLELVKSL_ ENSG00000143252|ENST00000367975|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;nc|ENSG00000143252|Q99643-5|SDHC 93.93812099017352 0.0044227730261779084 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}VKS{I|L} 9 0 + 77.33 0 0 7.3605 7.3605 87.024 0 0 0 3.138181262758266 8.138181262758266 3.138181262758266 3.138181262758266 0 2.860924374808178 0 1.2856668758921828 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}VKS{I|L};{[TV]|[{I|L}S]}YE{I|L}VKS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}HH{I|L}VKS{I|L} 7.3605;7.0618;4.091 +;-;- + 112 + NaN NaN 134958.7 NaN 12874 3316 16189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16193 69.299 NaN 181480 35 0 26874 0.261 + 1681 CFGLAMFYLL 10 43 589.2927325572133 1176.5709121812265 2 589.2911376953125 MULTI HCD FTMS 0 0 0 16189 88411.6640625 0.13976963037865223 7 -0.19583892822265625 4 Unmodified _CFGLAMFYLL_ ENSG00000111897|ENST00000339697|SERINC1 12.531546534597751 0.39389615866941496 1 KY{I|L}{I|L} 4 7 35.745 0 0 3.0381 0 0 641.2328968732437 0 641.2328968732437 0 28.75569708000178 0 0 0 0.8807196863200843 0 0 0 KY{I|L}{I|L} 3.0381 - 30 NaN NaN 120073.9 NaN 12875 3316 16189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16194 69.303 NaN 504670 35 0 41737 0.261 + 13213 KYLVLANML 9 76 532.8121820206844 1063.6098111081687 2 532.8121337890625 MULTI HCD FTMS 0 0 0 16189 187206.984375 1 0 0 5 Unmodified _KYLVLANML_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 74.92900055777586 0.007493270374442853 1 [YN]VA{I|L}[K{I|L}]M{I|L} 9 5 + 73.012 0 0 6.8646 6.8646 91.029 0 0 0 4.814309196763702 53.526291536404486 4.814309196763702 11.989700043360187 0 1.9247425010840047 1.3010299956639813 0 1.392159058960253 [YN]VA{I|L}[K{I|L}]M{I|L};[YV]NA{I|L}[K{I|L}]M{I|L};[YV][K{I|L}]{I|L}ANM{I|L};[YV][K{I|L}]{I|L}AGGM{I|L};[YV]GGA{I|L}[K{I|L}]M{I|L};[YV][K{I|L}]{I|L}A{[CA]|SS}A{I|L};[YV][K{I|L}]{I|L}[MN]A{I|L};[YV]{[VA]|[{I|L}G]}Q[K{I|L}]M{I|L};[YV][K{I|L}]{I|L}[TP][KC];[KA][{M(Oxidation (M))|F}T]{I|L}[K{I|L}]P{M(Oxidation (M))|F} 6.8646;5.7373;4.9986;4.1329;3.9206;3.851;3.4557;3.361;2.7985;2.6655 -;-;-;-;-;-;-;-;-;- 378 NaN NaN 150096.6 NaN 12876 3316 16189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16196 69.308 NaN 734340 35 0 96385 0.327 + 31891 VYNIHLAVNF 10 82 595.3218169221777 1188.6290809111554 2 595.8067016601562 MULTI HCD FTMS 0 0 0 16195 76176.421875 0.03513284481488323 29 -0.8231124877929688 1 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 62.57269311338072 0.03206542651389879 1 [YV]N{I|L}[H{I|L}]AVN{M(Oxidation (M))|F} 10 0 + 40.213 0 0 3.3831 3.3831 83.393 0 0 0 5.003406882387225 27.052141690699255 5.003406882387225 9.164539485499251 0 1.055462187404089 1.154901959985743 0 0.3494850021680094 + + [YV]N{I|L}[H{I|L}]AVN{M(Oxidation (M))|F};[YV]GG{I|L}[H{I|L}]AVN{M(Oxidation (M))|F};[YV]N{I|L}[H{I|L}]AVGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VK[H{I|L}]AVN{M(Oxidation (M))|F};{[NV]|[RG]}Y{I|L}[H{I|L}]AVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VK[H{I|L}]AVGG{M(Oxidation (M))|F};{[NV]|[RG]}Y{I|L}[H{I|L}]AVGG{M(Oxidation (M))|F} 3.3831;2.6121;2.6121;2.4034;2.2398;1.6324;1.4688 +;-;-;-;-;-;- + 401 NaN NaN 197728.4 NaN 12877 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16197 69.312 NaN 1023200 35 0 209470 0.261 + 26764 SYGDILHVI 9 86 508.77408775248415 1015.5336225717683 2 508.77398681640625 MULTI HCD FTMS 0 0 0 16195 323491.59375 0.3896453059054855 -1 0.01934814453125 2 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 133.70201269244603 0.0003804610509361063 1 SYGD{I|L}{I|L}HV{I|L} 9 0 + 101.12 0 0 9.9578 9.9578 95.781 0 0 0 75.05346964095841 8.384767769392738 8.384767769392738 13.692803136799157 0 3.1549471895720984 2 0.2742275032520141 0 + + SYGD{I|L}{I|L}HV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GD{I|L}{I|L}HV{I|L};[Y{I|L}]D[SG]{I|L}HV{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}HV{I|L};[Y{I|L}]D[VG]THV{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[VG]THV{I|L};[Y{I|L}]D[VG]{I|L}[HS]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[VP][PS]YN{I|L} 9.9578;8.6094;5.2326;4.3962;3.9502;3.1137;0.62675;0.0094225 +;+;-;-;-;-;-;- + 553 + NaN NaN 248080.7 NaN 12878 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16198 69.315 NaN 556530 35 0 163610 0.261 -1 YNYQMREMD 9 73 641.2484078849534 1280.4822628367067 2 641.2488403320312 MULTI HCD FTMS 0 0 0 16195 157301.4375 0.3150647007767073 5 -0.150482177734375 3 2 Oxidation (M) _YNYQM(Oxidation (M))REM(Oxidation (M))D_ tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1 3.944395688203298 0.32111559684428237 1 [YN]A 3 -1 21.171 0 0 1.6534 0 0 0 929.3161611123504 929.3161611123504 6.73393743112328 0 0 0 0 0 1.5228787452803376 0 0 [YN]A 1.6534 - 72 NaN NaN 177934.8 NaN 12879 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16199 69.319 NaN 328000 35 0 65456 0.261 + 24613 RYLPTGSFPF 10 52 592.8085720950354 1183.6025912568707 2 592.808349609375 MULTI HCD FTMS 0 0 0 16195 95648.4140625 0.017059380302162037 48 -1.329559326171875 4 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 23.789781309258295 0.28859042913526417 1 SRW{[VA]|[{I|L}G]}P{M(Oxidation (M))|F} 7 6 41.859 0 0 3.5366 0 0 322.16194350410314 0 322.16194350410314 0 38.76032923022301 0 0 0 1.4247425010840047 0 0.4247425010840047 0.3054621874040891 SRW{[VA]|[{I|L}G]}P{M(Oxidation (M))|F} 3.5366 - 117 NaN NaN 140676 NaN 12880 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16200 69.322 NaN 280380 35 0 38698 0.261 + 10069 IFFENHPYF 9 75 607.2878829273457 1212.5612129214912 2 607.2899169921875 MULTI HCD FTMS 0 0 0 16195 43045.66015625 0.378097277087523 1 -0.02605438232421875 5 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 27.628801355627647 0.12213550946336599 1 Q{M(Oxidation (M))|F}{[MG]|[TS]}V 5 8 26.708 0 0 2.2026 0 0 132.10580281999643 515.1770723932249 647.2828752132214 0 0 0 0 0 1.274227503252014 0 0.3252574989159953 0 Q{M(Oxidation (M))|F}{[MG]|[TS]}V 2.2026 - 223 + NaN NaN 127046.3 NaN 12881 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16201 69.325 NaN 280190 35 0 29453 0.262 + 32962 YALNFKSAI 9 63 513.7846202246833 NaN 0 513.78515625 PEAK HCD FTMS 0 0 0 16195 69726.09375 0.6698160616442057 1 -0.02605438232421875 6 Unmodified _YALNFKSAI_ REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1 32.30548876998284 0.10480114246275442 1 {M(Oxidation (M))|F}WT{I|L}{I|L} 5 -1 21.454 0 0 2.0919 0 0 131.094075066598 231.0776766412719 362.17175170786993 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}WT{I|L}{I|L} 2.0919 - 101 + NaN NaN 123699.2 NaN 12882 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16202 69.329 NaN 104200 35 0 7066.7 0.262 -1 0 61 420.3188420181999 NaN 0 420.52392578125 PEAK HCD FTMS 0 0 0 16195 11526.984375 0.2633529273067928 -4 0.1039886474609375 7 NaN NaN 1 VYV 3 -1 8.1876 0 0 0.97631 0 0 145.2833006362061 329.1346529596313 474.4179535958374 0 0 0 0 0 0 0 0 0 VYV 0.97631 - 20 + NaN NaN 99164.8 NaN 12883 3317 16195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16204 69.334 NaN 2325800 35 0 140420 0.327 -1 YNAPTDHGLCI 11 120 630.7877655450172 1259.5609781568344 2 630.787841796875 MULTI HCD FTMS 0 0 0 16203 1783759.5 0.5387634255959213 6 -0.176513671875 1 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 82.701 0 0 6.5659 0 0 0 265.1305563443884 265.1305563443884 31.389472639878086 0 0 0 0 2.504432191740108 1.6989700043360187 0.7302046884880937 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.5659 - 20752 + NaN NaN 432281.7 NaN 12884 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16205 69.338 NaN 421980 35 0 49949 0.261 + 22728 QYEEQFVTL 9 73 578.7797441175563 1155.5449353019126 2 578.7791137695312 MULTI HCD FTMS 0 0 0 16203 150364.28125 0.9304694284099025 3 -0.098175048828125 2 Unmodified _QYEEQFVTL_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF 45.69961567697781 0.039180348357221985 1 {M(Oxidation (M))|F}VT{I|L} 4 5 45.918 0 0 3.9737 0 0 677.2677391730758 0 677.2677391730758 0 26.8765315847925 0 0 0 1.3494850021680094 0 0.3494850021680094 0 + {M(Oxidation (M))|F}VT{I|L} 3.9737 + + 75 NaN NaN 158670.3 NaN 12885 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16206 69.342 NaN 353470 35 0 49256 0.261 + -1 IAQMHTSTCVC 11 59 633.7667241159263 1265.5188952986525 2 633.7669677734375 MULTI HCD FTMS 0 0 0 16203 71274.1953125 0.3680332308326838 3 -0.098175048828125 3 Carbamidomethyl (C),Oxidation (M) _IAQM(Oxidation (M))HTSTCVC(Carbamidomethyl (C))_ REV__ENST00000401886.5_1_22:20052239-20052689:+|nuORF 8.745405648335112 0.3805662881914433 1 WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4 -1 20.445 0 0 1.6156 0 0 731.2959471558776 0 731.2959471558776 0 2.4865124202832334 0 0 0 0 0 0 0.4247425010840047 WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.6156 - 13 + NaN NaN 133398.3 NaN 12886 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16207 69.345 NaN 176910 35 0 20087 0.261 -1 KYMDVQFDF 9 57 604.7689085503563 NaN 0 604.7692260742188 PEAK HCD FTMS 0 0 0 16203 77275.59375 0.6091657956329494 4 -0.12442779541015625 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 22.65808497894818 0.16955659035853546 1 D{M(Oxidation (M))|F}N 3 -1 31.198 0 0 2.5836 0 0 165.08239244103044 663.2825676668805 828.364960107911 0 0 0 0 0 1.5 0 0 0 D{M(Oxidation (M))|F}N 2.5836 - 166 + NaN NaN 122182.2 NaN 12887 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16208 69.348 NaN 222290 35 0 23340 0.261 -1 FFDAELSQM 9 61 552.239060575028 1102.463568216856 2 552.239501953125 MULTI HCD FTMS 0 0 0 16203 69866.875 0.7893408237637577 2 -0.065399169921875 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 19.361941925380144 0.1930734562688509 1 S{I|L}ESVE{M(Oxidation (M))|F} 7 -1 42.325 0 0 3.8392 0 0 293.1049061505875 0 293.1049061505875 0 12.015245835737947 0 0 0 1.5994850021680094 0 0 0 S{I|L}ESVE{M(Oxidation (M))|F} 3.8392 - 562 NaN NaN 124968.8 NaN 12888 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16209 69.351 NaN 275920 35 0 31650 0.261 + 32963 YALNFKSAI 9 63 513.7846202246833 NaN 0 513.78466796875 PEAK HCD FTMS 0 0 0 16203 51603.53125 0.4957236553755558 2 -0.065399169921875 6 Unmodified _YALNFKSAI_ REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1 25.399314129420986 0.1511568710901456 1 KG{I|L}T{I|L}{I|L} 6 -1 25.266 0 0 2.4636 0 0 166.03653467794294 231.07746301822502 397.113997696168 0 0 0 0 0 0 0 0.3494850021680094 0 KG{I|L}T{I|L}{I|L} 2.4636 - 164 + NaN NaN 129168.5 NaN 12889 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16210 69.355 NaN 148900 35 0 16748 0.261 -1 FYMLCAFLI 9 50 589.2927325572133 1176.5709121812265 2 589.2928466796875 MULTI HCD FTMS 0 0 0 16203 77320.5703125 0.1222357666020739 9 -0.2550811767578125 7 Carbamidomethyl (C) _FYMLC(Carbamidomethyl (C))AFLI_ ENSG00000151067|ENST00000399655|CACNA1C;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D 9.347437153973935 0.2795965555214564 1 Y{I|L}{I|L} 3 -1 29.693 0 0 2.5237 0 0 769.3282948224625 0 769.3282948224625 0 22.703037561203843 0 0 0 0.5 0 0 0 Y{I|L}{I|L} 2.5237 - 32 NaN NaN 98464.4 NaN 12890 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16211 69.358 NaN 172610 35 0 11277 0.261 + 31013 VSLIAVVPVLA 11 55 540.8549410042647 1079.6953290753293 2 540.767578125 MULTI HCD FTMS 0 0 0 16203 23446.947265625 0.16462695149696407 -5 0.13004302978515625 8 Unmodified _VSLIAVVPVLA_ REV__ENST00000493997.1_1_2:55086744-55094271:+|nuORF 5.731851221503515 0.39378271418728467 1 EN{M(Oxidation (M))|F}DV 5 -1 20.177 0 0 1.8688 0 0 166.24148220713977 306.18222986392817 472.42371207106794 0 0 0 0 0 0 0 0 0 EN{M(Oxidation (M))|F}DV 1.8688 - 51 + NaN NaN 106086.4 NaN 12891 3318 16203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16213 69.363 NaN 25489000 35 0 2977500 0.327 + 19737 NYAWVYYHL 9 101 614.7929287250602 1227.5713045169202 2 614.7935180664062 MULTI HCD FTMS 0 0 0 16212 18114748 0.3228424043063267 8 -0.22576141357421875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 1 [YN]AWVYYH{I|L} 9 0 + 123.87 0 0 10.09 10.09 96.116 0 0 0 29.5205343810445 16.478174818886373 16.478174818886373 14.827796776480469 0 2.8494850021680094 1.6989700043360187 0 2.6778259348524363 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYAWVY{[QV]|[N{I|L}]|[RA]|[KV]}W;{[WN]|[YH]}YAVYYH{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}GYAVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L} 10.09;8.8825;7.6856;7.2148;6.889;6.2878;6.0069;5.8946;5.8619;5.6776 +;-;+;-;-;-;-;-;-;- + 5272 NaN NaN 674857 NaN 12892 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16214 69.367 NaN 1799800 35 0 160230 0.261 + 12718 KYALLLQEL 9 107 545.8290241378968 1089.6434953425935 2 545.8291015625 MULTI HCD FTMS 0 0 0 16212 800757.375 0.8241436883731198 -1 0.02931976318359375 2 Unmodified _KYALLLQEL_ ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4 128.93241758739586 0.0006697181619526092 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{I|L}QE{I|L} 9 2 + 82.93 0 0 7.6107 7.6107 89.772 0 0 0 7.580648899613706 45.40964200659667 7.580648899613706 8.57840941039747 0 2.1861818737241734 1.3010299956639813 0 0.5484550065040282 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{I|L}[AG]E{I|L};[YK]A{I|L}{I|L}{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}{I|L}[AG]E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}K{I|L}QE{I|L};[YK]{I|L}A{I|L}{I|L}QE{I|L};[YK]A{I|L}{I|L}{I|L}[AG]E{I|L};[{M(Oxidation (M))|F}V]TK{I|L}{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}K{I|L}[AG]E{I|L} 7.6107;6.8235;6.7657;6.4612;5.9784;5.8811;5.7086;5.6161;5.0528;5.0361 -;-;-;+;-;-;-;-;-;- + 2780 NaN NaN 360204.6 NaN 12893 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16215 69.371 NaN 289510 35 0 28066 0.261 + 14372 LEEQHHQAMQ 10 64 625.7838610241098 1249.5531691150195 2 625.7841186523438 MULTI HCD FTMS 0 0 0 16212 162959.625 0.3985840949849657 7 -0.19948577880859375 3 Unmodified _LEEQHHQAMQ_ ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3 15.248480904072842 0.3684828712757339 1 [YN]AW{[{M(Oxidation (M))|F}H]|[RQ]}YH 8 9 61.921 0 0 4.9555 0 0 0 128.07730326617153 128.07730326617153 43.05945812348389 0 0 0 0 2.2614393726401687 2 0 0.5941876774005248 [YN]AW{[{M(Oxidation (M))|F}H]|[RQ]}YH 4.9555 - 345 NaN NaN 138198.4 NaN 12894 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16216 69.374 NaN 347900 35 0 52229 0.261 + 1160 AYLESFYKF 9 64 584.289645907993 1166.5647388827858 2 584.2899169921875 MULTI HCD FTMS 0 0 0 16212 169340.90625 0.009184582558780418 61 -1.6933517456054688 4 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 79.59630418116434 0.005983006570063981 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 106.88 0 0 9.1617 9.1617 94.587 0 0 0 25.642492736872597 92.26280941356464 25.642492736872597 11.760912590556813 0 3.274227503252014 2 0.7302046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YKE{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[WH]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[RH]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YKE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F} 9.1617;8.1535;5.3474;5.0124;4.7057;4.2574;4.2473;4.1447;4.0386;3.7313 +;-;-;-;-;-;-;-;-;- + 456 NaN NaN 132771.5 NaN 12895 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16217 69.378 NaN 405170 35 0 60596 0.261 -1 0 60 536.1643267359541 535.157050269354 1 536.1654663085938 MULTI HCD FTMS 0 0 0 16212 156395.53125 0.6019403533048701 8 -0.22576141357421875 5 NaN NaN 1 A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 4.1812 0 0 0.78131 0 0 187.01381404064153 0 187.01381404064153 0 4.1812123800902175 0 0 0 0 0 0 0 A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.78131 - 16 + NaN NaN 144133.4 NaN 12896 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16218 69.381 NaN 513300 35 0 29395 0.261 + 2906 DYSPYFKTI 9 107 567.2791460627044 1132.5437391922087 2 567.2791748046875 MULTI HCD FTMS 0 0 0 16212 168214.59375 0.006822421518743686 235 -6.430572509765625 6 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 59.368380827593164 0.01846506874148156 1 M{M(Oxidation (M))|F}S 3 8 45.177 0 0 3.989 0 0 0 764.3987447476522 764.3987447476522 20.255762612236907 0 0 0 0 0.8494850021680094 1.6989700043360187 0.3494850021680094 0 M{M(Oxidation (M))|F}S 3.989 - 1173 + NaN NaN 178414.4 NaN 12897 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16219 69.384 NaN 311480 35 0 24286 0.264 + -1 NYCHSSLFAK 10 56 409.52573009437424 1225.5553608833227 3 410.19537353515625 MULTI HCD FTMS 0 0 0 16212 49570.95703125 0.22765007613710722 8 -0.22576141357421875 7 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))HSSLFAK_ REV__ENSG00000005700|ENST00000306270|IBTK;REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF;REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF;REV__nc|ENSG00000005700|Q9P2D0-2|IBTK 8.97624648632007 0.42715123575657504 1 YNA[PS]VY 7 -1 62.211 0 0 5.0761 0 0 0 428.1957511499447 428.1957511499447 52.60676356474015 0 0 0 0 1.3494850021680094 2 0 0 YNA[PS]VY 5.0761 - 91 + NaN NaN 147115.9 NaN 12898 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16220 69.388 NaN 152160 35 0 11419 0.261 + 4228 EVDVALSEL 9 52 487.7554970634691 973.4964411937382 2 487.75537109375 MULTI HCD FTMS 0 0 0 16212 43543.640625 0.15017123055146195 7 -0.19948577880859375 8 Unmodified _EVDVALSEL_ REV__ENSG00000181191|ENST00000374571|PJA1;REV__ENSG00000198961|ENST00000361189|PJA2;REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000181191|Q8NG27|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2 25.399314129420986 0.14091189997036632 1 {I|L}DT{I|L} 4 -1 33.914 0 0 3.4838 0 0 513.2440796330726 0 513.2440796330726 0 26.924712680444358 0 0 0 0.8252574989159953 0 0 0 {I|L}DT{I|L} 3.4838 - 75 NaN NaN 121853.4 NaN 12899 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16221 69.391 NaN 681540 35 0 109280 0.261 + 7795 FYPPKVELF 9 73 570.3105901170402 1138.6066273008803 2 570.8123779296875 MULTI HCD FTMS 0 0 0 16212 116444.1328125 0.12743939688688008 -9 0.24741363525390625 9 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 12.240655878213236 0.2545997876781172 1 YYS 3 8 31.343 0 0 2.7528 0 0 0 722.4180391900999 722.4180391900999 10.374015516889372 0 0 0 0 0.7614393726401688 1.3979400086720375 0.3807196863200844 0 YYS 2.7528 - 58 + NaN NaN 185367.3 NaN 12900 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16222 69.394 NaN 444150 35 0 62410 0.261 + 10127 IFLNKTFQW 9 85 598.8268217367107 1195.6390905402213 2 598.8267211914062 MULTI HCD FTMS 0 0 0 16212 147448.421875 0.3598394264959628 -4 0.11065673828125 10 Unmodified _IFLNKTFQW_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 84.5221896805406 0.004669506596793478 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW 9 0 + 81.45 0 0 6.8123 6.8123 89.435 0 0 0 7.147642715192504 68.26274388132951 7.147642715192504 9.208187539523749 0 2.9049471895720984 0 0 0.3807196863200844 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}[AG]W;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}V]KT{M(Oxidation (M))|F}QW;{[CT]|[{M(Oxidation (M))|F}G]}Q{M(Oxidation (M))|F}TK[{I|L}V]AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}V]KT{M(Oxidation (M))|F}[AG]W;{[CT]|[{M(Oxidation (M))|F}G]}[AG]{M(Oxidation (M))|F}TK[{I|L}V]AW 6.8123;6.0421;6.0421;5.2756;3.9041;3.8434;3.134;3.0769 +;-;-;-;-;-;-;- + 644 NaN NaN 167710.1 NaN 12901 3319 16212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16224 69.399 NaN 2719000 35 0 184720 0.327 + -1 TPSWHSTPAVC 11 140 621.7823641191582 1241.5501753051162 2 621.7821655273438 MULTI HCD FTMS 0 0 0 16223 1749576.75 0.3858170118983878 6 -0.1634063720703125 1 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 1 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 89.495 0 0 7.2083 7.2083 92.536 0 0 0 16.810734810058307 38.53792004211842 16.810734810058307 15.605117956918988 0 2.274227503252014 1.5228787452803376 1.110924374808178 1.3001648626366045 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCVGREAY;[YN]APCVGERAY;[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]APCVRGEAY;[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}DA;[YN]AW[{M(Oxidation (M))|F}E][WQ]V;[YN]APCVGERYA;[YN]APCVGREYA;NYAPYVW[SG]W 7.2083;5.9514;5.9514;5.8777;5.8508;5.7234;5.4027;5.3345;5.3345;5.3256 -;-;-;-;-;-;-;-;-;- 36752 NaN NaN 467387.5 NaN 12902 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16225 69.403 NaN 950210 35 0 172930 0.261 + 11962 KFNPVSFTW 9 100 563.2902382284798 1124.5659235237595 2 563.7730102539062 MULTI HCD FTMS 0 0 0 16223 94041.203125 0.08810902098722721 26 -0.731658935546875 2 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 36.506200033944 0.08138327636155518 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][KG]W 10 7 + 48.049 0 0 4.2726 4.2726 83.113 0 0 0 9.714686662118915 19.60660264963601 9.714686662118915 6.466586370380178 0 2.394599018282542 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][KG]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][VG][KS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[K{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}S[VP][KG]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[K{I|L}]D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[VS];{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}SG[H{I|L}]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[RN]VV[VS];{[CT]|[{M(Oxidation (M))|F}G]}[KG][VP]S{M(Oxidation (M))|F}TW;[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}S[VP][KG]W;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}[{I|L}A][HV]S{M(Oxidation (M))|F} 4.2726;3.6976;3.6499;2.9985;2.6734;2.6237;2.4714;1.7859;1.5029;1.3461 -;-;-;-;-;-;-;-;-;- 1434 NaN NaN 224699.6 NaN 12903 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16226 69.407 NaN 236110 35 0 52015 0.262 + 29571 VADPVEAVL 9 42 456.75531931945306 911.4960857057062 2 456.7554931640625 MULTI HCD FTMS 0 0 0 16223 192733.28125 0.2217151514110079 8 -0.23065185546875 3 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 54.773552608820026 0.024892918755467567 1 {[VA]|[{I|L}G]}D[VP]EAV{I|L} 9 0 + 61.36 0 0 6.7318 6.7318 88.353 0 0 0 13.937712079736073 39.44923730420989 13.937712079736073 9.018637558036673 0 2.1237125054200234 1.3010299956639813 0 0 + + {[VA]|[{I|L}G]}D[VP]EAV{I|L};{[VA]|[{I|L}G]}D[VP]E{I|L}G{I|L} 6.7318;5.7424 +;- + 83 NaN NaN 120337.2 NaN 12904 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16227 69.41 NaN 397790 35 0 142010 0.261 -1 0 39 440.5990379869836 1318.7752845611508 3 440.5992736816406 MULTI HCD FTMS 0 0 0 16223 170382.796875 0.286172140936794 8 -0.23065185546875 4 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.2579 0 0 1040.6130482632345 0 1040.6130482632345 0 22.78659694992122 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2579 - 14 NaN NaN 141276.2 NaN 12905 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16228 69.414 NaN 378440 35 0 22811 0.261 -1 LEFWMIACV 9 64 409.52573009437424 1225.5553608833227 3 409.5254211425781 MULTI HCD FTMS 0 0 0 16223 90973.109375 0.1742245017214543 8 -0.23065185546875 5 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))LEFWM(Oxidation (M))IAC(Carbamidomethyl (C))V_ ENST00000354619.9_1_1:236433215-236433290:-|nuORF 8.155526934196011 0.2891920862272901 1 YNA[PS]VYY 8 -1 62.401 0 0 5.0916 0 0 0 265.12949548892817 265.12949548892817 48.42145952513228 0 0 0 0 1.7302046884880937 2 0 0 YNA[PS]VYY 5.0916 - 356 + NaN NaN 134586.9 NaN 12906 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16229 69.417 NaN 322740 35 0 57955 0.261 -1 MCMKYLYT 8 62 555.2449705155026 1108.475388097805 2 555.7484741210938 MULTI HCD FTMS 0 0 0 16223 80635.9296875 0.8003342803705852 -2 0.065399169921875 6 Carbamidomethyl (C) _MC(Carbamidomethyl (C))MKYLYT_ ENST00000268607.9_1_16:87437976-87438060:+|nuORF 4.75600775471527 0.5349361699807423 1 [Y{I|L}]TC(Carbamidomethyl (C)) 4 -1 21.146 0 0 1.9077 0 0 0 568.23146654923 568.23146654923 2.5628939432026243 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]TC(Carbamidomethyl (C)) 1.9077 - 55 NaN NaN 126735.4 NaN 12907 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16230 69.42 NaN 238600 35 0 19287 0.261 + 6697 FPNRWEYYL 9 62 644.3114647874859 1286.6083766417717 2 644.3118286132812 MULTI HCD FTMS 0 0 0 16223 99893.265625 1 0 0 7 Unmodified _FPNRWEYYL_ APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-2|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-5|APAF1 26.268140514670165 0.13340543277302316 1 {M(Oxidation (M))|F}EYY{I|L} 5 4 44.24 0 0 3.4385 0 0 553.2756214826187 0 553.2756214826187 0 14.37022187087372 0 0 0 0.9247425010840047 0 0.3054621874040891 0 {M(Oxidation (M))|F}EYY{I|L} 3.4385 - 254 NaN NaN 119350.7 NaN 12908 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16231 69.424 NaN 205470 35 0 29625 0.261 + 10070 IFFENHPYF 9 70 607.2878829273457 1212.5612129214912 2 607.287109375 MULTI HCD FTMS 0 0 0 16223 74156.9453125 0.6513673851907126 4 -0.111114501953125 8 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 21.536976647645854 0.1742816388551942 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ES 5 5 33.175 0 0 2.736 0 0 0 586.2393282525999 586.2393282525999 16.977437731477423 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ES 2.736 - 154 + NaN NaN 108413 NaN 12909 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16232 69.427 NaN 265730 35 0 26223 0.261 + -1 TAMVMEIVL 9 76 540.7692061681155 NaN 0 540.7592163085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))TAM(Oxidation (M))VM(Oxidation (M))EIVL_ REV__ENSG00000154678|ENST00000396191|PDE1C;REV__nc|ENSG00000154678|Q14123-2|PDE1C;REV__nc|ENSG00000154678|Q14123-3|PDE1C;REV__PDE1C|p.R330Q|1|0.06|ENSG00000154678|chr7:31837963-31837963|C/T|missense_variant 7.910154910731844 0.25691533546754686 1 VDV 3 -1 16.198 0 0 1.5005 0 0 130.92305878234407 632.4124849908811 763.3355437732253 0 0 0 0 0 0 0 0 0 VDV 1.5005 - 58 + NaN NaN 135542.5 NaN 12910 3320 16223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16234 69.432 NaN 1854600 35 0 285210 0.327 + 24739 RYLWATVTI 9 115 561.8189609741303 1121.6233690150605 2 561.8191528320312 MULTI HCD FTMS 0 0 0 16233 892485.4375 0.5933004237347641 -2 0.06885528564453125 1 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 79.59630418116434 0.005983006570063981 1 VTADATVT{I|L} 9 4 86.336 0 0 7.6974 0 0 232.14224440742345 0 232.14224440742345 0 48.7113751626007 0 0 0 0 0 2.2971062485323515 0 VTADATVT{I|L} 7.6974 - 7287 NaN NaN 367904.8 NaN 12911 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16235 69.436 NaN 609260 35 0 40088 0.261 + 2952 DYVEGLRVF 9 79 549.2849270367394 1096.5553011402787 2 549.2850341796875 MULTI HCD FTMS 0 0 0 16233 232102.234375 0.12224143088774483 9 -0.25695037841796875 2 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 67.83816525789305 0.009787749748478139 1 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 92.903 0 0 8.4722 8.4722 96.587 0 0 0 21.61159286695316 73.23699398972998 21.61159286695316 38.372727025023 0 3.2614393726401687 1.6989700043360187 0.4247425010840047 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};[YN]A{[SA]|[TG]}G{I|L}[VG]V{M(Oxidation (M))|F};[YN][QT]G{I|L}[VG]V{M(Oxidation (M))|F};[Y{I|L}]DDG{I|L}RV{M(Oxidation (M))|F};[YN]ANT{I|L}[VG]V{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[YD]|[{M(Oxidation (M))|F}M]}G{I|L}RV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QQG{I|L}[VG]V{M(Oxidation (M))|F} 8.4722;4.9728;4.6477;4.3254;4.0986;4.0793;3.7357 +;-;-;-;-;-;- + 1046 NaN NaN 169986 NaN 12912 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16236 69.44 NaN 354970 35 0 25144 0.261 + -1 NYAERAKEMM 10 80 637.7778689754364 1273.5411850176727 2 637.7770385742188 MULTI HCD FTMS 0 0 0 16233 126863.34375 0.22365617119665282 8 -0.22739410400390625 3 2 Oxidation (M) _NYAERAKEM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000101161|ENST00000266079|PRPF6;REV__nc|ENSG00000101161|O94906-2|PRPF6 17.11289562659939 0.35104376501799556 1 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{M(Oxidation (M))|F}]AE[SG] 11 -1 + 54.358 0 0 4.2682 4.2682 83.024 0 0 0 11.470278992291796 2.3406104928206517 2.3406104928206517 6.200229199238926 0 1.7302046884880937 1.3979400086720375 0.7302046884880937 0.3054621874040891 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{M(Oxidation (M))|F}]AE[SG];[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWA{M(Oxidation (M))|F}[SG];[YN]A[EC]VYY[H{I|L}];[C(Carbamidomethyl (C))M]A{[CT]|[{M(Oxidation (M))|F}G]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[CP]|[EA]}MYY[H{I|L}];[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[MS]|[{M(Oxidation (M))|F}A]}W[SG];[YN]AW[SG][KS]A{M(Oxidation (M))|F}[SG];[YN]AW[SG][{M(Oxidation (M))|F}V]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[C(Carbamidomethyl (C))M]AW[HT][{I|L}P]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AW[SG][{M(Oxidation (M))|F}V]{I|L}[DC] 4.2682;3.7814;3.3676;3.1706;3.1502;2.7192;2.6139;2.4693;2.3332;2.3311 -;-;-;-;-;-;-;-;-;- 836 NaN NaN 136465.9 NaN 12913 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16237 69.443 NaN 496940 35 0 58993 0.262 + 6229 FPESSAIEAL 10 74 532.2690101731423 1062.5234674130845 2 532.2689819335938 MULTI HCD FTMS 0 0 0 16233 225488.78125 0.945809720775634 -2 0.06885528564453125 4 Unmodified _FPESSAIEAL_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-9|SON 45.69961567697781 0.09594615698576985 1 NA{I|L}[NG]EA{I|L} 8 7 46.921 0 0 4.416 0 0 262.1338062970719 0 262.1338062970719 0 27.99324549273406 0 0 0 1 0 0.3054621874040891 0.28872548999643577 NA{I|L}[NG]EA{I|L} 4.416 - 747 NaN NaN 159920.2 NaN 12914 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16238 69.447 NaN 200060 35 0 47092 0.262 -1 NYTICQCDHL 10 53 422.8463620684532 1265.5172568055596 3 422.8466491699219 MULTI HCD FTMS 0 0 0 16233 77761.1953125 0.13376695163311417 9 -0.25695037841796875 5 Carbamidomethyl (C) _NYTIC(Carbamidomethyl (C))QCDHL_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 8.444304893310646 0.4306066564229251 1 {I|L} 1 -1 18.495 0 0 1.4614 0 0 1134.422604561222 0 1134.422604561222 0 4.515449934959719 0 0 0 0.5 0 0 0 {I|L} 1.4614 + + 22 + NaN NaN 132359.4 NaN 12915 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16239 69.45 NaN 378290 35 0 92133 0.261 + 5119 FEREEINIL 9 64 581.8083528675305 1161.602152801861 2 581.80908203125 MULTI HCD FTMS 0 0 0 16233 176219.03125 0.7746468212331192 -4 0.12422943115234375 6 Unmodified _FEREEINIL_ tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1 36.506200033944 0.08138327636155518 1 E{I|L}N{I|L}{I|L} 5 4 50.745 0 0 4.3686 0 0 561.2570057599625 0 561.2570057599625 0 25.683728447993346 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + E{I|L}N{I|L}{I|L} 4.3686 + + 51 NaN NaN 132689.7 NaN 12916 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16240 69.453 NaN 423670 35 0 91273 0.261 + -1 CLFGMSMNLL 10 69 601.2749227980888 1200.5352926629776 2 601.2754516601562 MULTI HCD FTMS 0 0 0 16233 124139.953125 0.8724357990292356 -2 0.06885528564453125 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LFGM(Oxidation (M))SMNLL_ REV__ENST00000551555.2_1_12:111066661-111070313:+|nuORF 12.240655878213236 0.39661705172222156 1 {I|L}N{I|L}{I|L} 4 -1 44.24 0 0 3.685 0 0 729.2291548599394 0 729.2291548599394 0 18.298122174395033 0 0 0 1.2302046884880937 0 0 0 {I|L}N{I|L}{I|L} 3.685 - 51 NaN NaN 150533.4 NaN 12917 3321 16233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16242 69.458 NaN 18933000 35 0 4804000 0.327 + 24426 RYLDEINLL 9 109 574.8189054301534 1147.6232579271068 2 574.8198852539062 MULTI HCD FTMS 0 0 0 16241 14502925 0.9463515164312543 -1 0.02625274658203125 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 125.0377797344192 0.0009059125702818869 1 [YR]{I|L}DE{I|L}N{I|L}{I|L} 9 0 + 96.581 0 0 8.4158 8.4158 87.39 0 0 0 0.4127832240508553 16.478174818886373 0.4127832240508553 0.4127832240508553 0 2.474907363720609 0.958607314841775 0.7302046884880937 0.6861818737241735 + + [YR]{I|L}DE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}N{I|L}{I|L};[YR]{I|L}D{I|L}EN{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};[YR]{I|L}DE{I|L}GG{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[YR]{I|L}D{I|L}EGG{I|L}{I|L};[Y{I|L}]RD{I|L}EGG{I|L}{I|L};[Y{I|L}]DR{I|L}EN{I|L}{I|L} 8.4158;8.3798;7.8217;7.7857;7.6134;7.5774;7.4851;7.0193;6.9834;6.891 +;-;-;-;-;-;-;-;-;- + 7925 NaN NaN 941345.8 NaN 12918 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16243 69.462 NaN 2025000 35 0 220270 0.261 + 26765 SYGDILHVI 9 96 508.77408775248415 1015.5336225717683 2 508.7742919921875 MULTI HCD FTMS 0 0 0 16241 466510.9375 0.5619119645220838 4 -0.10437774658203125 2 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 96.28474662873226 0.004361282420133734 1 SYGD{I|L}{I|L}HV{I|L} 9 0 + 69.932 0 0 6.8863 6.8863 92.658 0 0 0 21.52359359484872 6.932535108940058 6.932535108940058 20.49308446004985 0 2.503083433768431 2 0 0 + + SYGD{I|L}{I|L}HV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GD{I|L}{I|L}HV{I|L};[Y{I|L}]DVGTHV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GD{I|L}{I|L}H{I|L}V;[Y{I|L}]DVGTH{I|L}V;[Y{I|L}]D[SG]{I|L}HV{I|L};{NN|[MP]|[D{I|L}]|[EV]}YVGTHV{I|L};[Y{I|L}]D[SG]{I|L}H{I|L}V;{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}HV{I|L};{NN|[MP]|[D{I|L}]|[EV]}YVGTH{I|L}V 6.8863;4.8683;4.6612;4.3534;4.1464;4.0006;3.7298;3.4857;3.0691;2.9883 +;+;-;-;-;-;-;-;-;- + 1811 + NaN NaN 400655.2 NaN 12919 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16244 69.466 NaN 846290 35 0 113570 0.261 + 4428 EYGKFFVTL 9 78 552.2922455325703 1102.5699381319405 2 552.2926635742188 MULTI HCD FTMS 0 0 0 16241 348864.0625 0.25566581826802826 -5 0.150482177734375 3 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 62.57269311338072 0.013982455292112035 1 [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L} 9 0 + 43.755 0 0 3.9684 3.9684 88.33 0 0 0 14.881062318217108 7.764137363823792 7.764137363823792 25.392339346049138 0 0.9634679910804405 1.2218487496163564 0.6549471895720985 0 + + [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L};[KG][RH]{M(Oxidation (M))|F}[MN]T{I|L};[{M(Oxidation (M))|F}V]Y[NS]VVY{I|L};[{M(Oxidation (M))|F}V]YA[QT]VY{I|L};[{M(Oxidation (M))|F}V]YA{I|L}{[QS]|[NT]}Y{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[MS]|[{M(Oxidation (M))|F}A]}{[ES]|[DT]|[{I|L}C]}VY{I|L} 3.9684;1.6654;1.2887;0.89021;0.55646;0.36958 +;-;-;-;-;- + 1657 + NaN NaN 211895.2 NaN 12920 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16245 69.469 NaN 210440 35 0 38261 0.261 + 34164 YPDENGFDAF 10 56 587.7379859142688 1173.4614188953376 2 587.7374267578125 MULTI HCD FTMS 0 0 0 16241 121714.2578125 0.32511198831056143 -11 0.30644989013671875 4 Unmodified _YPDENGFDAF_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 57.24910588100465 0.05142613675551719 1 G{M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 5 5 57.563 0 0 4.9054 0 0 618.2296620099625 0 618.2296620099625 0 53.1259189508755 0 0 0 1.8494850021680094 0 0.3494850021680094 0 + G{M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 4.9054 + + 50 NaN NaN 118240.5 NaN 12921 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16246 69.473 NaN 340060 35 0 70252 0.261 + -1 DLEEVQGMF 9 59 555.2449705155026 1108.475388097805 2 555.7471923828125 MULTI HCD FTMS 0 0 0 16241 100752.8125 1 0 0 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DLEEVQGMF_ REV__ENST00000370872.7_1_1:75175921-75180300:-|nuORF 4.75600775471527 0.31496297302216103 1 MPNW 4 -1 20.662 0 0 1.864 0 0 0 577.2478121393186 577.2478121393186 3.7506126339169974 0 0 0 0 0 0 0 0 MPNW 1.864 - 110 + NaN NaN 136568.6 NaN 12922 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16247 69.476 NaN 287330 35 0 29435 0.261 + 16185 LPVKVVVDVL 10 70 540.8549410042647 1079.6953290753293 2 540.854736328125 MULTI HCD FTMS 0 0 0 16241 61176.2578125 0.4295339906542733 -1 0.02625274658203125 6 Unmodified _LPVKVVVDVL_ ENSG00000062725|ENST00000083182|APPBP2 24.990960013464015 0.27735500881591096 1 VDV{I|L} 4 6 41.186 0 0 3.8146 0 0 635.4377308576187 0 635.4377308576187 0 28.086681479559203 0 0 0 0.9247425010840047 0 0 0 + VDV{I|L} 3.8146 + + 218 NaN NaN 125332.6 NaN 12923 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16248 69.479 NaN 252900 35 0 70847 0.261 -1 DIHEDFCSVC 10 54 641.2484078849534 1280.4822628367067 2 641.2484130859375 MULTI HCD FTMS 0 0 0 16241 18360.94921875 0.03677580487197891 10 -0.28646087646484375 7 2 Carbamidomethyl (C) _DIHEDFC(Carbamidomethyl (C))SVC(Carbamidomethyl (C))_ ENSG00000135365|ENST00000676320|PHF21A;ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A 1.6526216038709556 0.46655611578153744 1 G 1 -1 3.9794 0 0 0.31077 0 0 704.7750617642442 515.6579683893186 1220.4330301535629 0 0 0 0 0 0 0 0 0 G 0.31077 - 27 + NaN NaN 122526.3 NaN 12924 3322 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16250 69.484 NaN 1324800 35 0 147170 0.327 + 1387 AYPYNFSNL 9 88 544.7560759211783 1087.4975989091565 2 544.7562866210938 MULTI HCD FTMS 0 0 0 16249 856867.5625 0.9923024598892086 2 -0.04559326171875 1 Unmodified _AYPYNFSNL_ ENSG00000174282|ENST00000380599|ZBTB4 174.72732175369546 1.2540765405420886E-09 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYN{M(Oxidation (M))|F}SN{I|L} 9 0 + 94.28 0 0 8.6694 8.6694 92.493 0 0 0 17.632414347745808 14.973024840566467 14.973024840566467 9.208187539523749 0 2.25 2 0.3054621874040891 1.5114393726401687 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYN{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYN{M(Oxidation (M))|F}SGG{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AYN{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYGG{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYNNYA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AYN{M(Oxidation (M))|F}SGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYNN{I|L}AY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYGG{M(Oxidation (M))|F}SGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYNGGYA{I|L} 8.6694;7.8227;7.048;6.7829;6.2398;6.2013;5.8364;5.8253;5.5901;5.3931 +;-;-;-;-;-;-;-;-;- + 1871 NaN NaN 290851.3 NaN 12925 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16251 69.488 NaN 1047900 35 0 69883 0.261 + 19132 NFSSSNFAKQM 11 106 630.7877655450172 1259.5609781568344 2 630.7881469726562 MULTI HCD FTMS 0 0 0 16249 734919.4375 0.2219737098440275 11 -0.31952667236328125 2 Unmodified _NFSSSNFAKQM_ REV__ENSG00000100401|ENST00000356244|RANGAP1 45.739877483867886 0.09998344372470726 1 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GYYH{I|L} 10 -1 + 78.246 0 0 6.2121 6.2121 87.188 0 0 0 4.792170286773171 35.57680488145144 4.792170286773171 8.512870643024229 0 2.3494850021680094 1.6989700043360187 0 1.2689301784845295 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GYYH{I|L};NYA{[DA]|[EG]}HT[{I|L}P]MQ;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[VP]HDQ;[YN][{I|L}P]TH{[DA]|[EG]}AMQ;[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[VP]HV[SG];[YN]AW[YV]PSN{M(Oxidation (M))|F};[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GY{[RE]|[WV]}Q;NYA{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}E]YH{I|L};[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GY[R{I|L}][SG];[YN]AW{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[VA]|[{I|L}G]}DQ 6.2121;5.5363;4.966;4.9359;4.9122;4.8917;4.6724;4.6644;4.6157;4.6116 -;-;-;-;-;-;-;-;-;- 5034 NaN NaN 234932.2 NaN 12926 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16252 69.492 NaN 316130 35 0 53331 0.261 + 19268 NLPCPWQPLI 10 76 590.8137966320144 1179.6130403308287 2 590.8139038085938 MULTI HCD FTMS 0 0 0 16249 133948.09375 1 0 0 3 Unmodified _NLPCPWQPLI_ ENST00000420967.5_1_12:118454632-118456902:+|nuORF 10.073929032068715 0.4168838835836452 1 V{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{I|L} 7 7 46.274 0 0 3.9228 0 0 349.1278592155813 0 349.1278592155813 0 -12.940006580126173 -12.940006580126173 0 0 0.8807196863200843 0 0 0 V{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{I|L} 3.9228 - 723 NaN NaN 135659.7 NaN 12927 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16253 69.495 NaN 198710 35 0 25219 0.261 + 15842 LPIVLVGITV 10 48 512.344170756763 1022.673788580326 2 512.3446655273438 MULTI HCD FTMS 0 0 0 16249 116279.109375 1 0 0 4 Unmodified _LPIVLVGITV_ ENSG00000126903|ENST00000651600|SLC10A3;nc|ENSG00000126903|P09131-2|SLC10A3 37.97399986684836 0.1629881689457739 1 {I|L}P{I|L}V[R{I|L}]S 7 5 70.265 0 0 6.8708 0 0 0 241.1554354303344 241.1554354303344 63.275779165182726 0 0 0 0 1.7302046884880937 1.6989700043360187 0.4247425010840047 0 {I|L}P{I|L}V[R{I|L}]S 6.8708 - 33 + NaN NaN 113031.7 NaN 12928 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16254 69.499 NaN 167440 35 0 17495 0.261 -1 KYMDVQFDF 9 53 604.7689085503563 NaN 0 604.76953125 PEAK HCD FTMS 0 0 0 16249 87233.1640625 0.6876616175040702 9 -0.2604522705078125 5 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 28.494509381512117 0.13038125526484795 1 D{M(Oxidation (M))|F}NK 4 -1 30.433 0 0 2.5203 0 0 165.0782041271719 535.1933687799436 700.2715729071156 0 0 0 0 0 1.3494850021680094 0 0 0 D{M(Oxidation (M))|F}NK 2.5203 - 145 + NaN NaN 109090.6 NaN 12929 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16255 69.502 NaN 183550 35 0 29853 0.261 + 10071 IFFENHPYF 9 59 607.2878829273457 1212.5612129214912 2 607.7909545898438 MULTI HCD FTMS 0 0 0 16249 43924.2265625 0.4366483696304717 9 -0.2604522705078125 6 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 34.40172386719151 0.0910440009062557 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 4 5 38.175 0 0 3.1483 0 0 0 673.2726158411334 673.2726158411334 13.750612633917001 0 0 0 0 0.4247425010840047 0 0.5 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.1483 + + 39 + NaN NaN 109872.2 NaN 12930 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16256 69.505 NaN 178070 35 0 27981 0.262 -1 LPDMEVVGL 9 53 494.7544276908168 987.4943024484336 2 494.7547302246094 MULTI HCD FTMS 0 0 0 16249 58444.25390625 0.7071436795277583 -5 0.1504364013671875 7 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 15.847184025352803 0.2234401846867398 1 VVG{I|L} 4 -1 41.938 0 0 4.2469 0 0 601.24223525215 0 601.24223525215 0 34.771212547196626 0 0 0 1 0 0 0 VVG{I|L} 4.2469 + + 60 NaN NaN 108381.7 NaN 12931 3323 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16258 69.51 NaN 8552900 35 0 1029200 0.327 + 19738 NYAWVYYHL 9 86 614.7929287250602 1227.5713045169202 2 614.793212890625 MULTI HCD FTMS 0 0 0 16257 5332735 0.09504040513997208 13 -0.38207244873046875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 149.9946105101851 8.83195450578534E-06 1 [YN]WAVYYH{I|L} 9 2 + 104.29 0 0 8.4959 8.4959 94.405 0 0 0 14.417950670662023 14.417950670662023 14.417950670662023 14.417950670662023 0 2.3494850021680094 1.6989700043360187 0 2.2416440611282624 [YN]WAVYYH{I|L};NYAWVYYH{I|L};[WY]NAVYYH{I|L};[WY]ANVYYH{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[WN]|[YH]}YAVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[HT]VCYH{I|L} 8.4959;7.3214;6.4952;6.369;5.7892;5.7835;5.706;5.1841;5.0334;5.0333 -;+;-;-;-;-;-;-;-;- + 3335 NaN NaN 408053.5 NaN 12932 3324 16257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16259 69.515 NaN 377770 35 0 53882 0.261 + 35468 YYFAVKTLI 9 83 559.3182207435848 1116.6218885539695 2 559.318603515625 MULTI HCD FTMS 0 0 0 16257 112364.046875 0.5937097780620025 1 -0.0195159912109375 2 Unmodified _YYFAVKTLI_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 66.45667989310934 0.010234776021261575 1 YY{M(Oxidation (M))|F}AVK{I|L}T{I|L} 9 2 + 74.447 0 0 6.6672 6.6672 86.402 0 0 0 4.547509540478032 4.547509540478032 4.547509540478032 4.547509540478032 0 1.774227503252014 2 0.6861818737241735 0 YY{M(Oxidation (M))|F}AVK{I|L}T{I|L};YY{M(Oxidation (M))|F}AVKT{I|L}{I|L};YY{M(Oxidation (M))|F}AV[{I|L}T]K{I|L};[Y{M(Oxidation (M))|F}]YAVKT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}YVKT{I|L}{I|L};[Y{M(Oxidation (M))|F}]AYVKT{I|L}{I|L};YY{M(Oxidation (M))|F}AV{I|L}{I|L}[KT];[Y{M(Oxidation (M))|F}]YAV[{I|L}T]K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}YV[{I|L}T]K{I|L};[Y{M(Oxidation (M))|F}]AYV[{I|L}T]K{I|L} 6.6672;6.2599;5.293;3.436;3.3711;3.0557;2.9164;2.4691;2.4041;2.0887 -;+;-;-;-;-;-;-;-;- + 296 + NaN NaN 136833.3 NaN 12933 3324 16257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16260 69.518 NaN 198220 35 0 27931 0.262 -1 VPMEDINL 8 64 473.73104613587077 945.4475393385416 2 473.7310485839844 MULTI HCD FTMS 0 0 0 16257 73068.6953125 0.229507538997514 -25 0.6628189086914062 3 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 15.847184025352803 0.47719562709667024 1 D{I|L}N{I|L} 4 -1 30.79 0 0 3.2566 0 0 472.19966323066564 0 472.19966323066564 0 16.837294113476204 0 0 0 0.4247425010840047 0 0 0 D{I|L}N{I|L} 3.2566 + + 37 NaN NaN 115147.7 NaN 12934 3324 16257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16261 69.522 NaN 169020 35 0 40602 0.261 + 704 APYPGPVAL 9 43 442.74727414037864 883.4799953475573 2 442.74737548828125 MULTI HCD FTMS 0 0 0 16257 94281.4296875 0.9910317057275414 1 -0.0195159912109375 4 Unmodified _APYPGPVAL_ REV__ENSG00000196781|ENST00000376499|TLE1;REV__TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant;REV__TLE1|p.T727Pfs*28|1|0.17|ENSG00000196781|chr9:81584475-81584475|C/-|frameshift_variant 28.173230860318316 0.11963627304438548 1 A{I|L} 2 -1 30.969 0 0 3.5054 0 0 681.3482184694308 0 681.3482184694308 0 12.385606273598313 0 0 0 1 0 0 0 A{I|L} 3.5054 + + 17 + NaN NaN 106730.4 NaN 12935 3324 16257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16262 69.525 NaN 340750 35 0 43581 0.261 + 3032 EADSFFKVL 9 69 528.2738182682813 1054.5330836033625 2 528.2743530273438 MULTI HCD FTMS 0 0 0 16257 70602.1875 0.23303503462616737 -3 0.078338623046875 5 Unmodified _EADSFFKVL_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 49.55428908609986 0.03219431099695407 1 {[CP]|[EA]}DS{M(Oxidation (M))|F}{M(Oxidation (M))|F}KV{I|L} 9 0 + 41.691 0 0 3.9535 3.9535 86.876 0 0 0 10.004311474114331 10.202264589233394 10.004311474114331 14.436974992327123 0 1.360924374808178 0 0 0 + + {[CP]|[EA]}DS{M(Oxidation (M))|F}{M(Oxidation (M))|F}KV{I|L};{[CP]|[EA]}[WY]{M(Oxidation (M))|F}KV{I|L};{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))E]|[WC]}[RH]V{I|L} 3.9535;2.5845;1.4625 +;-;- + 114 + NaN NaN 122981.7 NaN 12936 3324 16257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16264 69.53 NaN 1631400 35 0 108690 0.327 + 8617 HDQDICVYIH 10 126 621.7823641191582 1241.5501753051162 2 621.7827758789062 MULTI HCD FTMS 0 0 0 16263 879635.3125 0.19397735356797272 11 -0.336334228515625 1 Unmodified _HDQDICVYIH_ ENST00000259526.3_1_8:120436340-120436517:+|nuORF 32.30548876998284 0.21217886106551395 1 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 9 + 86.905 0 0 6.9997 6.9997 92.594 0 0 0 9.064198990057875 41.06743071055483 9.064198990057875 18.426251677155264 0 2.274227503252014 1.5228787452803376 0.9604093769761877 1.425833702434617 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}DA;[YN]APCV[DP]NH{I|L};[YN]AW[{M(Oxidation (M))|F}E][WQ]V;[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SPY;[YN]APCRE{I|L}NY;[YN]APCVR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y;[YN]APYVC{[QV]|[N{I|L}]|[RA]|[KV]}DA;[YN]APCV[DP]GGH{I|L} 6.9997;5.5156;5.3263;5.2523;5.1824;4.9737;4.7499;4.7488;4.5389;4.5171 -;-;-;-;-;-;-;-;-;- 26828 NaN NaN 333548.4 NaN 12937 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16265 69.534 NaN 1794900 35 0 472290 0.261 + 7796 FYPPKVELF 9 74 570.3105901170402 1138.6066273008803 2 570.3109130859375 MULTI HCD FTMS 0 0 0 16263 868550.6875 0.6029583237626083 -4 0.0978546142578125 2 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 29.081581746732265 0.1154664336125038 1 E{I|L}{M(Oxidation (M))|F} 3 6 33.672 0 0 2.9573 0 0 731.4222868251222 0 731.4222868251222 0 12.299412974464158 0 0 0 1.3494850021680094 0 0 0 + E{I|L}{M(Oxidation (M))|F} 2.9573 + + 100 NaN NaN 355918.9 NaN 12938 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16266 69.538 NaN 599050 35 0 62836 0.261 + 10128 IFLNKTFQW 9 96 598.8268217367107 1195.6390905402213 2 598.8271484375 MULTI HCD FTMS 0 0 0 16263 289354.25 0.7061524704715965 2 -0.059051513671875 3 Unmodified _IFLNKTFQW_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 125.0377797344192 0.0009059125702818869 1 {I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}QW 9 0 + 82.982 0 0 6.9404 6.9404 89.663 0 0 0 53.80871442509664 14.09256854528806 14.09256854528806 9.208187539523749 0 2.8283409326844264 0 0 1.3129529932484498 + + {I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}GGKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}GGKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}[AG]W;{I|L}{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}{[QN]|[E{I|L}]|[KN]};{I|L}[KA]{I|L}[YQ]{M(Oxidation (M))|F}QW 6.9404;6.1703;5.878;5.6287;5.1115;4.8586;4.8586;4.0921;2.1182;2.0081 +;-;-;+;-;-;-;-;-;- + 1652 + NaN NaN 177437.1 NaN 12939 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16267 69.541 NaN 519790 35 0 25589 0.261 + 2907 DYSPYFKTI 9 100 567.2791460627044 1132.5437391922087 2 567.2792358398438 MULTI HCD FTMS 0 0 0 16263 168202.796875 0.006821943062909031 241 -6.405387878417969 4 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.24910588100465 0.021429789259086996 1 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 52.134 0 0 4.6033 4.6033 87.289 0 0 0 19.47621246364342 11.429388014783221 11.429388014783221 12.606967663961917 0 1.9194451763165201 1.6989700043360187 0.5649093276264391 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[QT]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};N{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[WT]|[RM]}VSW;{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[QT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SP{I|L}EYK{M(Oxidation (M))|F} 4.6033;3.4901;3.0328;2.8836;1.9021;1.7704;1.3131;0.97973 +;-;-;-;-;-;-;- + 1009 NaN NaN 160504.9 NaN 12940 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16268 69.544 NaN 297540 35 0 42258 0.261 + 1161 AYLESFYKF 9 60 584.289645907993 1166.5647388827858 2 584.2894897460938 MULTI HCD FTMS 0 0 0 16263 152335.859375 0.008262275832083256 67 -1.8724441528320312 5 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 79.59630418116434 0.005983006570063981 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 104.62 0 0 8.9682 8.9682 94.193 0 0 0 25.642492736872597 84.67084689121528 25.642492736872597 11.020599913279625 0 3.3494850021680094 2 0.7302046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{[CP]|[EA]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{I|L}{[CP]|[EA]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}[KP]{[NV]|[RG]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESG[QA]{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[QN]|[E{I|L}]|[KN]}[KS]GW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]} 8.9682;8.0235;6.8295;5.9919;5.3474;5.1944;4.9479;4.4952;4.4567;4.4476 +;-;-;-;-;-;-;-;-;- + 884 NaN NaN 136127.7 NaN 12941 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16269 69.548 NaN 215820 35 0 33776 0.261 -1 SYAASGMCLLF 11 57 618.2749892088583 1234.5354254845165 2 618.2747802734375 MULTI HCD FTMS 0 0 0 16263 109714.40625 0.5494717483103779 -2 0.04559326171875 6 Carbamidomethyl (C),Oxidation (M) _SYAASGM(Oxidation (M))C(Carbamidomethyl (C))LLF_ ENSG00000132164|ENST00000254488|SLC6A11 17.11289562659939 0.30797719109864646 1 T{I|L}{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.2762 0 0 855.3266434967173 0 855.3266434967173 0 21.93311581407634 0 0 0 1 0 0.4247425010840047 0 T{I|L}{M(Oxidation (M))|F} 3.2762 - 42 NaN NaN 128980 NaN 12942 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16270 69.551 NaN 215550 35 0 53325 0.262 + 30724 VPILSEEEL 9 57 514.7791739050891 1027.5437948769782 2 514.7789306640625 MULTI HCD FTMS 0 0 0 16263 123205.1484375 0.9859692687741846 2 -0.059051513671875 7 Unmodified _VPILSEEEL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 37.97399986684836 0.07464525285885698 1 {I|L}{[ES]|[DT]|[{I|L}C]}EE{I|L} 6 3 42.708 0 0 4.1563 0 0 309.20527846504064 0 309.20527846504064 0 28.104028237526748 0 0 0 1.7302046884880937 0 0 0 + {I|L}{[ES]|[DT]|[{I|L}C]}EE{I|L} 4.1563 + + 40 NaN NaN 125174 NaN 12943 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16271 69.554 NaN 249280 35 0 17763 0.261 + 32692 WPLHTSSLTI 10 83 577.8133403986201 1153.61212786404 2 577.8131103515625 MULTI HCD FTMS 0 0 0 16263 59919.61328125 0.7604766554104602 2 -0.059051513671875 8 Unmodified _WPLHTSSLTI_ REV__tr|U7SYD6|U7SYD6_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00977PE=4SV=1 13.90604991867851 0.3810395177745597 1 VT{I|L} 3 -1 32.619 0 0 2.8276 0 0 822.4002552716812 0 822.4002552716812 0 25.17220322351953 0 0 0 0.5 0 0.3807196863200844 0 VT{I|L} 2.8276 - 217 NaN NaN 126006.5 NaN 12944 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16272 69.558 NaN 283160 35 0 35582 0.261 + 27041 SYMFVDENTF 10 66 634.7603224134787 1267.5060918937572 2 634.759765625 MULTI HCD FTMS 0 0 0 16263 32836.26171875 0.20189852391203325 -8 0.22208404541015625 9 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 49.52724829834842 0.07950882623896251 1 VDENT{M(Oxidation (M))|F} 6 4 47.44 0 0 3.7428 0 0 544.1998158185562 0 544.1998158185562 0 31.165827977365623 0 0 0 1.1549471895720984 0 0 0 + VDENT{M(Oxidation (M))|F} 3.7428 + + 142 NaN NaN 127636.6 NaN 12945 3325 16263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16274 69.562 NaN 287320 35 0 46902 0.327 + 3848 EPIPYEFMA 9 71 556.7520403406618 1111.4895277481235 2 556.7522583007812 MULTI HCD FTMS 0 0 0 16273 119123.78125 0.6794381067794607 -3 0.078369140625 1 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 54.773552608820026 0.024892918755467567 1 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4 5 42.766 0 0 3.8476 0 0 599.2947865216812 0 599.2947865216812 0 24.807131330965717 0 0 0 1.3252574989159953 0 0.7742275032520141 0 + E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 3.8476 + + 110 NaN NaN 132074.5 NaN 12946 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16275 69.567 NaN 176330 35 0 12071 0.263 + 34115 YNRAVDCWSL 10 48 409.52573009437424 1225.5553608833227 3 409.5255126953125 MULTI HCD FTMS 0 0 0 16273 60900.10546875 0.11663106387119664 14 -0.41490936279296875 2 Unmodified _YNRAVDCWSL_ CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2 8.444304893310646 0.4306066564229251 1 NYA[WP]Y 6 7 52.752 0 0 4.3044 0 0 0 428.19480310611567 428.19480310611567 45.76274388132951 0 0 0 0 1.0356668758921828 2 0 0 NYA[WP]Y 4.3044 - 75 + NaN NaN 118586.2 NaN 12947 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16276 69.57 NaN 124900 35 0 11948 0.261 + 14373 LEEQHHQAMQ 10 49 625.7838610241098 1249.5531691150195 2 625.7832641601562 MULTI HCD FTMS 0 0 0 16273 43605.171875 0.10665419712680828 14 -0.41490936279296875 3 Unmodified _LEEQHHQAMQ_ ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3 10.799506525563784 0.4100970765206026 1 AW{[{M(Oxidation (M))|F}H]|[RQ]}YH{I|L} 7 8 42.752 0 0 3.4214 0 0 277.106248924025 0 277.106248924025 0 37.267441563785866 0 0 0 1.8807196863200843 0 0 0 AW{[{M(Oxidation (M))|F}H]|[RQ]}YH{I|L} 3.4214 - 52 NaN NaN 97045.1 NaN 12948 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16277 69.574 NaN 119540 35 0 17999 0.263 + 21371 PTPGCLDVGL 10 40 486.24694600107915 970.4793390689583 2 486.2471923828125 MULTI HCD FTMS 0 0 0 16273 51348.96484375 0.35851479437893674 -12 0.33283233642578125 4 Unmodified _PTPGCLDVGL_ ENST00000409690.3_1_3:196435554-196438869:-|nuORF 10.073929032068715 0.4168838835836452 1 VG{I|L} 3 7 34.693 0 0 3.5748 0 0 683.2929217911936 0 683.2929217911936 0 19.20818753952375 0 0 0 1 0 0 0 + VG{I|L} 3.5748 + + 18 NaN NaN 94068.9 NaN 12949 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16278 69.577 NaN 97316 35 0 6444.7 0.261 -1 FQQWKQMYL 9 48 644.3114647874859 1286.6083766417717 2 644.3124389648438 MULTI HCD FTMS 0 0 0 16273 12334.310546875 0.12347489562687926 6 -0.1820831298828125 5 Oxidation (M) _FQQWKQM(Oxidation (M))YL_ ENSG00000149970|ENST00000379510|CNKSR2;nc|ENSG00000149970|Q8WXI2-5|CNKSR2 11.640296217721598 0.25978676193971967 1 YY{I|L} 3 -1 26.995 0 0 2.0981 0 0 829.3863013672716 0 829.3863013672716 0 21.510234424404686 0 0 0 0.3807196863200844 0 0 0 YY{I|L} 2.0981 - 10 NaN NaN 91796.3 NaN 12950 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16279 69.58 NaN 197370 35 0 22935 0.264 + 943 AYEGQTALN 9 53 483.7285431845806 NaN 0 483.7154235839844 PEAK HCD FTMS 0 0 0 16273 11907.03125 0.4190817048467029 -1 0.03277587890625 6 Unmodified _AYEGQTALN_ ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3;nc|ENSG00000167723|Q8NET8-3|TRPV3 11.640296217721598 0.23883959125015683 1 N{M(Oxidation (M))|F}D 3 9 9.0411 0 0 0.93647 0 0 131.12679386904614 455.1614168756469 586.2882107446931 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}D 0.93647 - 15 + NaN NaN 123399.3 NaN 12951 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16280 69.584 NaN 161000 35 0 34228 0.261 + 34851 YRRVMLDNF 9 54 405.21006335897215 NaN 0 405.20989990234375 PEAK HCD FTMS 0 0 0 16273 23774.701171875 0.7046696645760803 1 -0.026275634765625 7 Unmodified _YRRVMLDNF_ ENSG00000083812|ENST00000196482|ZNF324 7.289230182591677 0.2599242500475609 1 Y 1 8 3.9794 0 0 0.49225 0 0 489.24124990954743 153.07796655826408 642.3192164678115 0 0 0 0 0 0 0 0 0 + Y 0.49225 + + 4 + NaN NaN 115317.6 NaN 12952 3326 16273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16282 69.589 NaN 1332400 35 0 202380 0.326 + 24740 RYLWATVTI 9 95 561.8189609741303 1121.6233690150605 2 561.819091796875 MULTI HCD FTMS 0 0 0 16281 791539.625 0.5261943502751621 4 -0.13291168212890625 1 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 72.96794272382148 0.008127836904478181 1 VTADATVT{I|L} 9 4 82.899 0 0 7.391 0 0 232.14224440742345 0 232.14224440742345 0 42.73123798847138 0 0 0 0 0 2.254432191740108 0 VTADATVT{I|L} 7.391 - 3054 NaN NaN 282517 NaN 12953 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16283 69.593 NaN 515300 35 0 82410 0.261 + 26947 SYLHEVFEF 9 70 585.7765371156662 1169.5385212981323 2 585.7770385742188 MULTI HCD FTMS 0 0 0 16281 282080.25 1 0 0 2 Unmodified _SYLHEVFEF_ ENSG00000064313|ENST00000378164|TAF2 88.90359156742426 0.00455469703666567 1 EV{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 4 54.319 0 0 4.6445 0 0 500.23839003730626 0 500.23839003730626 0 38.65429454003329 0 0 0 1.3494850021680094 0 1.1861818737241734 0 + EV{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.6445 + + 473 NaN NaN 156558.3 NaN 12954 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16284 69.597 NaN 496290 35 0 77246 0.261 + 15469 LPDLSRFTL 9 79 531.3032572633912 1060.5919615935823 2 531.30419921875 MULTI HCD FTMS 0 0 0 16281 232199.359375 1 0 0 3 Unmodified _LPDLSRFTL_ MADD|p.P287L|1|0.26|ENSG00000110514|chr11:47276099-47276099|C/T|missense_variant 47.748688679222035 0.03472022231463587 1 {M(Oxidation (M))|F}{I|L}T{I|L} 4 6 41.186 0 0 3.8833 0 0 568.2962973417482 0 568.2962973417482 0 17.240830505375868 0 0 0 0.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}{I|L}T{I|L} 3.8833 - 288 NaN NaN 161029 NaN 12955 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16285 69.6 NaN 469030 35 0 46031 0.261 -1 QMLMVLEAL 9 67 532.2793991292915 NaN 0 532.26904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _QM(Oxidation (M))LMVLEAL_ ENSG00000144406|ENST00000673920|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80 11.640296217721598 0.23883959125015683 1 {I|L}E 2 -1 17.831 0 0 1.6781 0 0 618.286385073233 199.10897241763908 817.395357490872 0 0 0 0 0 0.5 0 0.4247425010840047 0 {I|L}E 1.6781 + + 105 + NaN NaN 156102.2 NaN 12956 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16286 69.603 NaN 191200 35 0 54115 0.262 -1 0 38 440.5990379869836 1318.7752845611508 3 440.5992736816406 MULTI HCD FTMS 0 0 0 16281 55414.9140625 0.09307397746691719 15 -0.44426727294921875 5 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.2579 0 0 1040.6121713674402 0 1040.6121713674402 0 29.776296993281406 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2579 - 9 NaN NaN 103158.6 NaN 12957 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16287 69.608 NaN 148280 35 0 23513 0.261 + 10072 IFFENHPYF 9 58 607.2878829273457 1212.5612129214912 2 607.2877197265625 MULTI HCD FTMS 0 0 0 16281 59735.8046875 0.5246973798285792 11 -0.33300018310546875 6 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 39.94969957227396 0.06557568441294001 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 31.242 0 0 2.5765 0 0 0 802.3183150825296 802.3183150825296 1.7558281444720336 0 0 0 0 0.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5765 + + 33 + NaN NaN 103889.3 NaN 12958 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16288 69.612 NaN 221520 35 0 18132 0.261 + -1 TMNGYKTANQM 11 68 637.7778689754364 1273.5411850176727 2 637.77685546875 MULTI HCD FTMS 0 0 0 16281 90311.7734375 0.15921687749942207 14 -0.41815948486328125 7 Oxidation (M) _TM(Oxidation (M))NGYKTANQM_ REV__ENSG00000019582|ENST00000009530|CD74;REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF;REV__ENST00000523813.1_1_5:149785162-149785881:-|nuORF;REV__ENST00000523836.5_1_5:149785806-149792312:-|nuORF;REV__nc|ENSG00000019582|P04233-2|CD74;REV__nc|ENSG00000019582|P04233-3|CD74;REV__nc|ENSG00000019582|P04233-4|CD74;REV__nc|ENSG00000019582|P04233-5|CD74 12.872603262515298 0.344922997490724 1 [YN]C{[CP]|[EA]}VYY[H{I|L}] 10 -1 + 42.386 0 0 3.3282 3.3282 80.173 0 0 0 1.9313391417849246 1.9313391417849246 1.9313391417849246 1.9313391417849246 0 0.4247425010840047 1.5228787452803376 0.5796896906561032 0 [YN]C{[CP]|[EA]}VYY[H{I|L}];[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWCD[SG];[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{M(Oxidation (M))|F}]AE[SG];[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VWA{M(Oxidation (M))|F}[SG];[YN]N[SG][SG]YY[H{I|L}];[YN]C{[CP]|[EA]}V[NP]D[H{I|L}];{[YD]|[{M(Oxidation (M))|F}M]}A{[QC]|[C(Carbamidomethyl (C))A]}VYY[H{I|L}];{[YD]|[{M(Oxidation (M))|F}M]}AW[SG]YY[H{I|L}];[YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[RD][YN];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[SG]YY[H{I|L}] 3.3282;3.1766;3.1385;2.8566;2.3573;2.1359;1.4855;1.3839;1.1253;0.79798 -;-;-;-;-;-;-;-;-;- 612 + NaN NaN 119510.8 NaN 12959 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16289 69.615 NaN 162300 35 0 24898 0.261 + -1 CEYEFIDLI 9 47 601.2749227980888 1200.5352926629776 2 601.2745971679688 MULTI HCD FTMS 0 0 0 16281 55874.6328125 0.3926780113583081 4 -0.13291168212890625 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))EYEFIDLI_ REV__ENSG00000069122|ENST00000283296|ADGRF5;REV__nc|ENSG00000069122|Q8IZF2-2|ADGRF5 4.3292370932331545 0.3181982124262546 1 {I|L}N{I|L}{I|L} 4 -1 31.938 0 0 2.6603 0 0 729.231737205275 0 729.231737205275 0 24.948500216800937 0 0 0 0 0 0 0 {I|L}N{I|L}{I|L} 2.6603 - 17 NaN NaN 111071.1 NaN 12960 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16290 69.618 NaN 212390 35 0 51688 0.261 + 14699 LHAFMGFNIL 10 62 581.8083528675305 1161.602152801861 2 581.80859375 MULTI HCD FTMS 0 0 0 16281 60852.66015625 0.26750413629696057 2 -0.07048797607421875 9 Unmodified _LHAFMGFNIL_ ENST00000355068.4_1_17:7213473-7213746:+|nuORF 13.90604991867851 0.3810395177745597 1 {I|L}N{I|L}{I|L} 4 6 38.175 0 0 3.2864 0 0 690.2949085919937 0 690.2949085919937 0 28.711375162600703 0 0 0 0.9247425010840047 0 0 0 {I|L}N{I|L}{I|L} 3.2864 - 29 NaN NaN 117096 NaN 12961 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16291 69.621 NaN 122210 35 0 22876 0.264 + -1 STLCCYMLML 10 36 422.8463620684532 1265.5172568055596 3 423.1802978515625 MULTI HCD FTMS 0 0 0 16281 29586.33203125 0.09926086371683494 15 -0.44426727294921875 10 Carbamidomethyl (C),2 Oxidation (M) _STLCC(Carbamidomethyl (C))YM(Oxidation (M))LM(Oxidation (M))L_ REV__ENSG00000185792|ENST00000332836|NLRP9;REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9 1.7422754331352037 0.46608156381052757 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97687.3 NaN 12962 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16292 69.625 NaN 79426 35 0 17962 0.261 + 20926 PLADPYII 8 41 451.2547484524294 900.4949439716588 2 451.25433349609375 MULTI HCD FTMS 0 0 0 16281 45018.8984375 0.827672559945701 4 -0.13291168212890625 11 Unmodified _PLADPYII_ tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1 13.50788311687929 0.4944073034352369 1 Y{I|L}{I|L} 3 5 35.445 0 0 3.9362 0 0 493.253709861525 0 493.253709861525 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 + Y{I|L}{I|L} 3.9362 + + 7 NaN NaN 94882.8 NaN 12963 3327 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16294 69.63 NaN 6632200 35 0 1541900 0.327 + 19886 NYDLALKYF 9 101 573.795417264638 1145.576281596076 2 574.8192749023438 MULTI HCD FTMS 0 0 0 16293 211358.09375 0.9024503138947635 -1 0.0409698486328125 1 Unmodified _NYDLALKYF_ ENSG00000071537|ENST00000336735|SEL1L 51.41523569358685 0.02959097413485123 1 E{I|L}N{I|L}[YG]KY{M(Oxidation (M))|F} 9 5 + 69.489 0 0 6.0658 6.0658 87.416 0 0 0 12.32749356866482 10.059049011737969 10.059049011737969 9.208187539523742 0 1.2898166913470481 0 0 0.6747425010840047 E{I|L}N{I|L}[YG]KY{M(Oxidation (M))|F};E{I|L}GG{I|L}[YG]KY{M(Oxidation (M))|F};E{I|L}NV[KG]{I|L}DMQ;EN{I|L}{I|L}[YG]KY{M(Oxidation (M))|F};E{M(Oxidation (M))|F}D{I|L}[KG]KY{M(Oxidation (M))|F};E{I|L}N{I|L}[VG]KDMQ;E{I|L}{[{M(Oxidation (M))|F}D]|MM}[KG]KY{M(Oxidation (M))|F};E{I|L}GGV[KG]{I|L}DMQ;E{I|L}NV[W{I|L}][EP]{M(Oxidation (M))|F};E{M(Oxidation (M))|F}VE[KG]KY{M(Oxidation (M))|F} 6.0658;5.262;5.1877;4.9489;4.6073;4.5966;4.4485;4.3878;4.2641;4.1508 -;-;-;-;-;-;-;-;-;- 6398 + NaN NaN 468018.3 NaN 12964 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16295 69.634 NaN 1763800 35 0 277240 0.261 + 4429 EYGKFFVTL 9 83 552.2922455325703 1102.5699381319405 2 552.29248046875 MULTI HCD FTMS 0 0 0 16293 1067321.75 0.782189161628002 1 -0.02951812744140625 2 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 114.20165948288297 0.0022564706844261533 1 [YE]GK{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L} 9 0 + 71.141 0 0 6.4523 6.4523 92.925 0 0 0 26.997943175190414 22.847244456677615 22.847244456677615 35.004836249442995 0 1.7104093769761874 1.154901959985743 1.2644979867444217 0 + + [YE]GK{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[KS]{M(Oxidation (M))|F}VT{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VT[YN]VT{I|L};[KG][RH]{M(Oxidation (M))|F}[MN]T{I|L};[KG][RH]{M(Oxidation (M))|F}K[DC]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VT[KG][YE]{I|L} 6.4523;3.2775;2.9812;2.2531;1.5266;0.28574 +;-;-;-;-;- + 791 + NaN NaN 357468.7 NaN 12965 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16296 69.638 NaN 676300 35 0 109840 0.261 + 1508 AYVEWFNRL 9 80 599.3064036704163 1196.5982544076326 2 599.3065185546875 MULTI HCD FTMS 0 0 0 16293 350836.625 1 0 0 3 Unmodified _AYVEWFNRL_ ENSG00000138670|ENST00000264400|RASGEF1B;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant 70.33199760932243 0.0089807860198535 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NGV{I|L} 10 2 + 96.926 0 0 8.1001 8.1001 88.162 0 0 0 18.558721036074942 16.53212513775344 16.53212513775344 3.1259189508755014 0 2.7614393726401687 1.5228787452803376 0 0.9749073637206093 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NGV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}GGR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}GGGV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}{I|L}[RN];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][C(Carbamidomethyl (C))S]NGV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][C(Carbamidomethyl (C))S]NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}[PG][KT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE[RV]{M(Oxidation (M))|F}QW;[WE]V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NGV{I|L} 8.1001;7.8389;6.8281;6.5195;5.8345;5.601;5.3361;4.6924;4.1194;3.6035 -;+;-;-;-;-;-;-;-;- + 1420 NaN NaN 193685.9 NaN 12966 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16297 69.641 NaN 354320 35 0 98062 0.261 + 34165 YPDENGFDAF 10 66 587.7379859142688 1173.4614188953376 2 587.7380981445312 MULTI HCD FTMS 0 0 0 16293 269204.03125 0.7190731754346499 -5 0.1456146240234375 4 Unmodified _YPDENGFDAF_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 51.41523569358685 0.07264263333115425 1 NG{M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 6 4 63.766 0 0 5.434 0 0 504.1876895025626 0 504.1876895025626 0 57.198799121841034 0 0 0 2 0 0.7134679910804405 0 + NG{M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 5.434 + + 76 + NaN NaN 137589.2 NaN 12967 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16298 69.644 NaN 601260 35 0 48362 0.261 + 26766 SYGDILHVI 9 90 508.77408775248415 1015.5336225717683 2 508.77410888671875 MULTI HCD FTMS 0 0 0 16293 117165.2421875 0.1411254187610207 10 -0.29203033447265625 5 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 78.14939416004806 0.006451203201226903 1 [Y{I|L}]DRE{I|L}N 7 7 44.213 0 0 4.3537 0 0 0 109.06503061303707 109.06503061303707 -1.4990373785541635 0 -1.4990373785541635 0 0 0 1.3979400086720375 0.6421590589602533 0.3054621874040891 [Y{I|L}]DRE{I|L}N 4.3537 - 680 NaN NaN 175550.4 NaN 12968 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16299 69.648 NaN 156010 35 0 21669 0.261 -1 KYMDVQFDF 9 43 604.7689085503563 NaN 0 604.7676391601562 PEAK HCD FTMS 0 0 0 16293 60140.953125 0.4740929157922457 14 -0.40329742431640625 6 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 18.373094154950223 0.19831836980174267 1 D{M(Oxidation (M))|F}N 3 -1 31.198 0 0 2.5836 0 0 165.0803302193063 663.2821472827025 828.3624775020087 0 0 0 0 0 1.5 0 0 0 D{M(Oxidation (M))|F}N 2.5836 - 51 + NaN NaN 106789.8 NaN 12969 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16300 69.651 NaN 294190 35 0 22208 0.261 -1 APDAFDIVAM 10 67 533.2494474869917 1064.4843420407833 2 533.2496337890625 MULTI HCD FTMS 0 0 0 16293 33448.5546875 0.4735292292728829 -1 0.0409698486328125 7 Oxidation (M) _APDAFDIVAM(Oxidation (M))_ ENSG00000183856|ENST00000361170|IQGAP3 36.12702656103203 0.1790159924230938 1 D{I|L}VA{M(Oxidation (M))|F} 5 -1 61.454 0 0 5.7731 0 0 501.22178208160204 0 501.22178208160204 0 38.26606256887672 0 0 0 2.3494850021680094 0 0 0 D{I|L}VA{M(Oxidation (M))|F} 5.7731 + + 426 + NaN NaN 130026.9 NaN 12970 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16301 69.654 NaN 88010 35 0 5174.1 0.261 + 23218 RFTDQTFKPKH 11 48 468.9160316670939 NaN 0 468.9160461425781 PEAK HCD FTMS 0 0 0 16293 10924.361328125 0.4432026975329244 6 -0.17391204833984375 8 Unmodified _RFTDQTFKPKH_ REV__chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3;REV__ENSG00000062038|ENST00000264012|CDH3;REV__ENST00000542274.5_1_16:68679206-68732300:+|nuORF;REV__nc|ENSG00000062038|P22223-2|CDH3 1.1097533296519684 0.33897209286470975 1 N 1 -1 5.4846 0 0 0.58607 0 0 671.8180730004003 146.92812524967033 818.7461982500706 0 0 0 0 0 0 0 0 0 N 0.58607 - 5 + NaN NaN 96650.2 NaN 12971 3328 16293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16303 69.659 NaN 6759100 35 0 764490 0.327 + 19739 NYAWVYYHL 9 112 614.7929287250602 1227.5713045169202 2 614.7932739257812 MULTI HCD FTMS 0 0 0 16302 4449280.5 0.07929541244809231 18 -0.4976806640625 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 1 [YN]AWVYYH{I|L} 9 0 + 123.24 0 0 10.04 10.04 95.973 0 0 0 28.895840698003 16.478174818886373 16.478174818886373 14.393326938302636 0 2.8494850021680094 1.6989700043360187 0 2.615356566548286 + + [YN]AWVYYH{I|L};[YN]AWVYNW{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};[YN]AWVYGGW{I|L};NYAWVYYH{I|L};[YN]AVWYNW{I|L};[YN]WAVYNW{I|L};[YN]AWVW[YN]{I|L};NYAWVYN{I|L}W 10.04;8.867;8.7089;8.6882;8.1169;7.6856;7.5364;7.5157;7.1893;7.0418 +;-;-;-;-;+;-;-;-;- + 8569 NaN NaN 665625.6 NaN 12972 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16304 69.664 NaN 603360 35 0 38893 0.261 -1 YNAPTDHGLCI 11 91 630.7877655450172 1259.5609781568344 2 630.7879638671875 MULTI HCD FTMS 0 0 0 16302 376408.6875 0.11368978491863092 17 -0.47148895263671875 2 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 1 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 83.326 0 0 6.6155 0 0 0 265.13044153385005 265.13044153385005 60.13805019828801 0 0 0 0 2.504432191740108 1.6989700043360187 0.7302046884880937 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.6155 - 1523 + NaN NaN 171281.4 NaN 12973 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16305 69.667 NaN 284340 35 0 31825 0.262 + 1388 AYPYNFSNL 9 54 544.7560759211783 1087.4975989091565 2 544.7559204101562 MULTI HCD FTMS 0 0 0 16302 156477.3125 0.18120982623916565 8 -0.2330169677734375 3 Unmodified _AYPYNFSNL_ ENSG00000174282|ENST00000380599|ZBTB4 55.50274090549119 0.023872834264864425 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SN{I|L} 9 0 + 69.243 0 0 6.3672 6.3672 88.566 0 0 0 52.789230860337994 9.137342758552691 9.137342758552691 9.208187539523749 0 1.8851518780601921 2 0.3494850021680094 0.7742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}S{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F} 6.3672;5.5204;3.7919;2.2385 +;-;-;- + 134 + NaN NaN 121489.1 NaN 12974 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16306 69.671 NaN 216510 35 0 33308 0.261 -1 VPMEDINL 8 52 473.73104613587077 945.4475393385416 2 473.7310791015625 MULTI HCD FTMS 0 0 0 16302 160685.828125 0.5047114746886329 -20 0.5631256103515625 4 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 23.1484247019978 0.4234759064137959 1 {I|L}N{I|L} 3 -1 35.005 0 0 3.7025 0 0 587.2257007640382 0 587.2257007640382 0 24.547509540478032 0 0 0 0.5 0 0 0.3807196863200844 {I|L}N{I|L} 3.7025 + + 36 NaN NaN 109792.4 NaN 12975 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16307 69.674 NaN 252180 35 0 46121 0.261 + 24614 RYLPTGSFPF 10 48 592.8085720950354 1183.6025912568707 2 592.8093872070312 MULTI HCD FTMS 0 0 0 16302 82897.3359375 0.014785160775063392 60 -1.652130126953125 5 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 12.240655878213236 0.39661705172222156 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 7 30.93 0 0 2.6132 0 0 774.4019525611308 0 774.4019525611308 0 23.940162615404077 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 2.6132 + + 15 NaN NaN 119117.7 NaN 12976 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16308 69.677 NaN 388960 35 0 58751 0.261 + 31813 VYMDWYEKF 9 67 640.7862258131424 1279.5578986930848 2 640.7862548828125 MULTI HCD FTMS 0 0 0 16302 149237.53125 0.13566052423878883 -5 0.14905548095703125 6 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 74.19965305603844 0.007729275404663812 1 [YV]MDWYEK{M(Oxidation (M))|F} 9 0 + 89.875 0 0 7.0239 7.0239 85.439 0 0 0 1.096981436199016 1.096981436199016 1.096981436199016 1.096981436199016 0 2.3494850021680094 1.6989700043360187 0.3807196863200844 0 + + [YV]MDWYEK{M(Oxidation (M))|F};VYMDWYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWDMP{M(Oxidation (M))|F};[YV]MDW{[SA]|[TG]}[YV]{M(Oxidation (M))|F};[Y{I|L}][EC]WYEK{M(Oxidation (M))|F};[Y{I|L}][Y{M(Oxidation (M))|F}]{[QG]|[NA]}DMP{M(Oxidation (M))|F} 7.0239;6.9382;5.2152;4.2104;3.6087;2.5705 +;+;-;-;-;- + 341 NaN NaN 143429.5 NaN 12977 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16309 69.681 NaN 137980 35 0 26714 0.263 -1 LPDMEVVGL 9 38 494.7544276908168 987.4943024484336 2 494.754638671875 MULTI HCD FTMS 0 0 0 16302 60162.3125 0.727931253915781 1 -0.0295562744140625 7 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 15.847184025352803 0.2234401846867398 1 VVG{I|L} 4 -1 41.938 0 0 4.2469 0 0 601.24125868965 0 601.24125868965 0 38.83925646871916 0 0 0 1 0 0 0 VVG{I|L} 4.2469 + + 15 NaN NaN 102612.3 NaN 12978 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16310 69.684 NaN 176490 35 0 22174 0.261 + 35469 YYFAVKTLI 9 62 559.3182207435848 1116.6218885539695 2 559.3180541992188 MULTI HCD FTMS 0 0 0 16302 87620.984375 0.4629722463158253 6 -0.17725372314453125 8 Unmodified _YYFAVKTLI_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 39.94969957227396 0.06557568441294001 1 YY{M(Oxidation (M))|F}AV[K{I|L}]T{I|L} 9 2 + 64.128 0 0 5.7431 5.7431 90.768 0 0 0 48.722412206649466 11.425449767853308 11.425449767853308 21.56295947543775 0 1.774227503252014 2 0.3252574989159953 0 YY{M(Oxidation (M))|F}AV[K{I|L}]T{I|L};YY{M(Oxidation (M))|F}AV{I|L}{I|L}[KT] 5.7431;3.812 -;- 67 + NaN NaN 112461.7 NaN 12979 3329 16302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16312 69.689 NaN 2370300 35 0 684800 0.326 + 7797 FYPPKVELF 9 50 570.3105901170402 1138.6066273008803 2 570.3106689453125 MULTI HCD FTMS 0 0 0 16311 1156353.375 0.8027544076605602 1 -0.032867431640625 1 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 39.94969957227396 0.06557568441294001 1 PE{I|L}{M(Oxidation (M))|F} 4 5 39.725 0 0 3.4889 0 0 634.3720570294937 0 634.3720570294937 0 17.048734808312034 0 0 0 1.3807196863200843 0 0 0 PE{I|L}{M(Oxidation (M))|F} 3.4889 - 74 NaN NaN 443077.2 NaN 12980 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16313 69.693 NaN 1008800 35 0 71996 0.261 + -1 TPSWHSTPAVC 11 110 621.7823641191582 1241.5501753051162 2 621.7826538085938 MULTI HCD FTMS 0 0 0 16311 440046.03125 0.09703903808427929 16 -0.44193267822265625 2 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 1 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 80.253 0 0 6.464 6.464 91.957 0 0 0 11.535502169506785 26.32196805495775 11.535502169506785 21.39403810376281 0 2.1989700043360187 1.5228787452803376 1.024227503252014 0.8901668265424344 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]AW[{M(Oxidation (M))|F}E][WQ]V;[YN]APCVG{[QN]|[E{I|L}]|[KN]}NY;[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SPY;[YN][NS][KT]CYH{I|L};[YN]APCVR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y;[YN][NS][KT]WAC(Carbamidomethyl (C))V;[YN]G[SG][KT]CYH{I|L};[YN]G[SG][KT]WAC(Carbamidomethyl (C))V 6.464;4.7408;4.7408;4.6503;4.597;4.5552;4.3903;4.347;4.3163;4.108 -;-;-;-;-;-;-;-;-;- 8742 NaN NaN 249963 NaN 12981 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16314 69.697 NaN 604260 35 0 42796 0.261 -1 YNAPTDHGLCI 11 91 630.7877655450172 1259.5609781568344 2 630.7876586914062 MULTI HCD FTMS 0 0 0 16311 250440.890625 0.07564270415513888 18 -0.49761199951171875 3 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 1 [YN]A{M(Oxidation (M))|F}AVY{[RE]|[WV]}Q 10 -1 + 79.006 0 0 6.2725 6.2725 89.205 0 0 0 7.486760616925011 46.545700912310224 7.486760616925011 9.393326938302621 0 2.5 1.6989700043360187 0 1.2614393726401687 [YN]A{M(Oxidation (M))|F}AVY{[RE]|[WV]}Q;[YN]A{M(Oxidation (M))|F}AV[VP][HD]Q;[YN]A{M(Oxidation (M))|F}{I|L}GY{[RE]|[WV]}Q;[YN]A{M(Oxidation (M))|F}{I|L}G[VP][HD]Q;[YN]P[YQ]YYH{I|L};D[HN]{NN|[MP]|[D{I|L}]|[EV]}VA{M(Oxidation (M))|F}AMQ;[YN]A{M(Oxidation (M))|F}{I|L}[R{M(Oxidation (M))|F}]AD[SG];[YN]A{M(Oxidation (M))|F}{I|L}{[RE]|[WV]}A[YN];[YN]A{M(Oxidation (M))|F}{I|L}{[RE]|[WV]}[YG]Q;[YN]A{M(Oxidation (M))|F}{I|L}{[RE]|[WV]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6.2725;5.5268;5.1145;4.3687;3.971;3.6468;3.5374;2.9524;2.9524;2.7914 -;-;-;-;-;-;-;-;-;- 2461 NaN NaN 183386.2 NaN 12982 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16315 69.7 NaN 1375100 35 0 250370 0.261 + 29876 VFDEAIRAVL 10 104 566.8216788775242 1131.6288048218482 2 566.8219604492188 MULTI HCD FTMS 0 0 0 16311 430350.8125 0.6100656207372304 -1 0.0295562744140625 4 Unmodified _VFDEAIRAVL_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 71.70789743142352 0.01556163018108538 1 [{M(Oxidation (M))|F}V]DEA{I|L}RAV{I|L} 10 0 + 72.159 0 0 6.3765 6.3765 87.377 0 0 0 3.177418734074564 49.4825221775622 3.177418734074564 8.26606256887672 0 2.778659694992122 0 0.6747425010840047 0 + + [{M(Oxidation (M))|F}V]DEA{I|L}RAV{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RA{I|L}V;{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RAV{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RG{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[QA]A{I|L}GVAV{I|L};{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RA{I|L}V;[{M(Oxidation (M))|F}V]DEA{I|L}GR{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RG{I|L}{I|L};[YQ][QA]A{I|L}GVAV{I|L};[{M(Oxidation (M))|F}V][TA]QQGVAV{I|L} 6.3765;5.6461;5.5796;5.4224;5.0175;4.8491;4.692;4.6255;4.5247;4.4181 +;-;-;-;-;-;-;-;-;- + 1565 NaN NaN 293116.7 NaN 12983 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16316 69.703 NaN 288370 35 0 40722 0.261 + 3033 EADSFFKVL 9 58 528.2738182682813 1054.5330836033625 2 528.2742309570312 MULTI HCD FTMS 0 0 0 16311 131001.0703125 0.43239225351676847 3 -0.0919189453125 5 Unmodified _EADSFFKVL_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 57.72198328787511 0.020768266150574023 1 {[CP]|[EA]}DS{M(Oxidation (M))|F}{M(Oxidation (M))|F}KV{I|L} 9 0 + 43.623 0 0 4.1367 4.1367 87.08 0 0 0 11.668177096237002 10.642492736872597 10.642492736872597 14.436974992327123 0 1.4291746928241125 0 0 0 + + {[CP]|[EA]}DS{M(Oxidation (M))|F}{M(Oxidation (M))|F}KV{I|L};{[CP]|[EA]}[WY]{M(Oxidation (M))|F}KV{I|L};{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))E]|[WC]}[RH]V{I|L};{[QN]|[E{I|L}]|[KN]}[NP][WR]Q{I|L};{[QN]|[E{I|L}]|[KN]}[YV][YQ]Q{I|L} 4.1367;2.7677;1.86;0.57774;0.45926 +;-;-;-;- + 112 + NaN NaN 122000 NaN 12984 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16317 69.707 NaN 602700 35 0 44461 0.261 + 33499 YIDKVFLNF 9 86 579.8127906812376 1157.6110284292752 2 579.7967529296875 MULTI HCD FTMS 0 0 0 16311 15011.66015625 0.21244473264364538 2 -0.05576324462890625 6 Unmodified _YIDKVFLNF_ REV__ENSG00000198915|ENST00000395810|RASGEF1A;REV__nc|ENSG00000198915|Q8N9B8-2|RASGEF1A 26.88365393820708 0.12808753336095696 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K 8 -1 59.576 0 0 5.1465 0 0 0 162.0848434385397 162.0848434385397 12.06530859430913 0 0 0 0 0 1.6989700043360187 0.5866968715561641 0.7614393726401688 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K 5.1465 - 1222 NaN NaN 185639.1 NaN 12985 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16318 69.713 NaN 129000 35 0 15201 0.261 -1 NHQCCRTLF 9 61 618.2749892088583 1234.5354254845165 2 618.275146484375 MULTI HCD FTMS 0 0 0 16311 71291.1640625 0.3570404461492846 3 -0.0919189453125 7 2 Carbamidomethyl (C) _NHQC(Carbamidomethyl (C))C(Carbamidomethyl (C))RTLF_ nc|ENSG00000121964|Q4AE62-5|GTDC1 19.256988751693697 0.19398022840297344 1 T{I|L}{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.2152 0 0 855.3247932228112 0 855.3247932228112 0 20.981362441963327 0 0 0 0.9247425010840047 0 0.4247425010840047 0 T{I|L}{M(Oxidation (M))|F} 3.2152 + + 23 NaN NaN 98684.6 NaN 12986 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16319 69.717 NaN 298450 35 0 82067 0.262 -1 FPANVMDVI 9 39 511.25409607697145 1020.4936392207429 2 511.2549133300781 MULTI HCD FTMS 0 0 0 16311 141055.59375 0.25200452223431874 -22 0.6288528442382812 8 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 22.736283301280096 0.1639198954644489 1 {M(Oxidation (M))|F}DV{I|L} 4 -1 39.553 0 0 3.8758 0 0 528.2679310529312 0 528.2679310529312 0 39.55259398656281 0 0 0 1 0 0 0 {M(Oxidation (M))|F}DV{I|L} 3.8758 + + 11 NaN NaN 130195.7 NaN 12987 3330 16311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16321 69.722 NaN 328300 35 0 58931 0.326 + 27042 SYMFVDENTF 10 60 634.7603224134787 1267.5060918937572 2 634.7610473632812 MULTI HCD FTMS 0 0 0 16320 160811.640625 0.988773726685226 -2 0.0624237060546875 1 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 49.52724829834842 0.07950882623896251 1 EDV{M(Oxidation (M))|F}EC{M(Oxidation (M))|F} 7 7 42.088 0 0 3.3205 0 0 380.16996962715 0 380.16996962715 0 26.254019516304226 0 0 0 2.1677353201839438 0 0.4247425010840047 0 EDV{M(Oxidation (M))|F}EC{M(Oxidation (M))|F} 3.3205 - 120 NaN NaN 126795 NaN 12988 3331 16320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16322 69.726 NaN 729400 35 0 85310 0.262 + 30058 VFSTVVIHF 9 86 524.7950064029178 1047.5754598726355 2 524.7950439453125 MULTI HCD FTMS 0 0 0 16320 245089.78125 0.48508465770454695 -3 0.09194183349609375 2 Unmodified _VFSTVVIHF_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 154.46347324262513 4.107785341423729E-06 1 V{M(Oxidation (M))|F}STVV{I|L}H{M(Oxidation (M))|F} 9 0 + 85.812 0 0 8.1915 8.1915 90.108 0 0 0 76.85005281864252 14.37330807715405 14.37330807715405 7.225665361961546 0 2.791447825603967 0 0.805462187404089 0 + + V{M(Oxidation (M))|F}STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{[MG]|[TS]}V{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V]V{[MG]|[TS]}[H{I|L}]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{[WT]|[RM]}{I|L}{[QG]|[NA]}V;[{M(Oxidation (M))|F}V]V{[MG]|[TS]}[H{I|L}]{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V][Q{I|L}][WK]EV;[{M(Oxidation (M))|F}V]VAA[WK]EV 8.1915;7.5017;5.2857;4.9819;4.0194;2.7659;2.5003;1.4995;0.42771;0.23939 +;+;-;-;-;-;-;-;-;- + 389 + NaN NaN 192903.6 NaN 12989 3331 16320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16323 69.73 NaN 397840 35 0 34337 0.261 + 1162 AYLESFYKF 9 74 584.289645907993 1166.5647388827858 2 584.2908935546875 MULTI HCD FTMS 0 0 0 16320 130635.7890625 0.007085324015005707 73 -2.0203094482421875 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 66.45667989310934 0.010234776021261575 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 81.339 0 0 6.9725 6.9725 92.845 0 0 0 23.263612033208716 34.1721087539529 23.263612033208716 20.929162166258934 0 2.055462187404089 2 0.6382104921644451 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[WQ]{M(Oxidation (M))|F}GW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[WQ]WG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[WH]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[{M(Oxidation (M))|F}V]{[QS]|[NT]}G[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[{M(Oxidation (M))|F}T]{[NV]|[RG]}GW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]} 6.9725;5.1784;4.8065;4.7777;4.4989;4.0899;3.3733;3.264;3.2493;3.147 +;-;-;-;-;-;-;-;-;- + 803 NaN NaN 152079.9 NaN 12990 3331 16320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16324 69.733 NaN 325600 35 0 75109 0.261 + 3849 EPIPYEFMA 9 62 556.7520403406618 1111.4895277481235 2 556.7523193359375 MULTI HCD FTMS 0 0 0 16320 91332.1171875 0.5209247065437225 2 -0.059051513671875 4 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 64.23631603340823 0.01165516075559909 1 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4 5 49.725 0 0 4.4737 0 0 599.2943592755875 0 599.2943592755875 0 31.765997036641593 0 0 0 1.4247425010840047 0 0.805462187404089 0 + E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4.4737 + + 75 NaN NaN 131108.4 NaN 12991 3331 16320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16325 69.736 NaN 168770 35 0 28753 0.261 -1 MPDLPNVGL 9 39 486.24694600107915 970.4793390689583 2 486.24725341796875 MULTI HCD FTMS 0 0 0 16320 83389.8125 0.5822216976078822 -7 0.21147918701171875 5 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.042465956692817 0.2476723265019929 1 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.2948462370605 0 683.2948462370605 0 19.20818753952375 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 21 NaN NaN 104119.1 NaN 12992 3331 16320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16326 69.74 NaN 211470 35 0 22664 0.261 + 13709 KYPLLLESI 9 68 538.3236343245692 1074.6327157159383 2 538.3246459960938 MULTI HCD FTMS 0 0 0 16320 63487.94921875 1 0 0 6 Unmodified _KYPLLLESI_ ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;nc|ENSG00000132694|O15085|ARHGEF11 49.55428908609986 0.03219431099695407 1 {I|L}{I|L}ES{I|L} 5 4 50.406 0 0 4.6905 0 0 501.2958241193375 0 501.2958241193375 0 40.80173315600403 0 0 0 1.5941876774005248 0 0 0 + {I|L}{I|L}ES{I|L} 4.6905 + + 53 NaN NaN 109433.6 NaN 12993 3331 16320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16328 69.745 NaN 359370 35 0 40699 0.326 + 24741 RYLWATVTI 9 72 561.8189609741303 1121.6233690150605 2 561.8189697265625 MULTI HCD FTMS 0 0 0 16327 139034.5625 0.09242645468378026 9 -0.26235198974609375 1 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 55.50274090549119 0.023872834264864425 1 TWATVT{I|L} 7 3 65.566 0 0 5.8456 0 0 331.21089369941564 0 331.21089369941564 0 41.2315883122519 0 0 0 0.805462187404089 0 1.1549471895720984 0 TWATVT{I|L} 5.8456 - 721 NaN NaN 131797.9 NaN 12994 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16329 69.749 NaN 249390 35 0 32139 0.261 + 6230 FPESSAIEAL 10 53 532.2690101731423 1062.5234674130845 2 532.2691650390625 MULTI HCD FTMS 0 0 0 16327 116544.359375 0.4888437792221377 9 -0.26235198974609375 2 Unmodified _FPESSAIEAL_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-9|SON 39.94969957227396 0.1458432724694501 1 {I|L}EA{I|L} 4 6 47.933 0 0 4.5112 0 0 618.2684193341812 0 618.2684193341812 0 33.15675328855981 0 0 0 1.4247425010840047 0 0.3252574989159953 0 + {I|L}EA{I|L} 4.5112 + + 72 NaN NaN 118880.6 NaN 12995 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16330 69.753 NaN 199180 35 0 40170 0.261 -1 LPMPTEPLL 9 46 513.7801051989912 1025.5456574647824 2 513.7805786132812 MULTI HCD FTMS 0 0 0 16327 86552.1640625 0.9392781650078119 -2 0.05576324462890625 3 Oxidation (M) _LPM(Oxidation (M))PTEPLL_ ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 32.30548876998284 0.10066689432505688 1 EP{I|L}{I|L} 4 -1 44.438 0 0 4.3331 0 0 555.2738514630875 0 555.2738514630875 0 28.953650195120844 0 0 0 0.9247425010840047 0 0.3252574989159953 0 EP{I|L}{I|L} 4.3331 + + 17 NaN NaN 113410.3 NaN 12996 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16331 69.756 NaN 204920 35 0 11696 0.261 + 21988 QEVDASIFKAW 11 79 647.3267068825704 1292.6388608319407 2 647.3276977539062 MULTI HCD FTMS 0 0 0 16327 38085.203125 0.6337503187500565 1 -0.03615570068359375 4 Unmodified _QEVDASIFKAW_ ENSG00000140968|ENST00000268638|IRF8 24.881564428377168 0.24028852512227317 1 [YV]{M(Oxidation (M))|F} 3 9 15.15 0 0 1.172 0 0 0 880.4152847535516 880.4152847535516 0.5634773035364304 0 0 0 0 0 1.2218487496163564 0 0 [YV]{M(Oxidation (M))|F} 1.172 - 448 NaN NaN 113163 NaN 12997 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16332 69.759 NaN 246370 35 0 33636 0.261 + -1 RQFNSNCYI 9 56 601.2749227980888 1200.5352926629776 2 601.2586669921875 MULTI HCD FTMS 0 0 0 16327 10709.490234375 0.07526458996174 9 -0.26235198974609375 5 Carbamidomethyl (C) _RQFNSNC(Carbamidomethyl (C))YI_ REV__ENSG00000283463|ENST00000457775|HSFX4;REV__ENSG00000283697|ENST00000431993|HSFX3 3.5964929083625545 0.32375295897743744 1 TW 2 -1 12.831 0 0 1.0688 0 0 165.11162155406652 745.2692354791624 910.380857033229 0 0 0 0 0 0 0 0.4247425010840047 0 TW 1.0688 - 26 + NaN NaN 130996.5 NaN 12998 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16333 69.763 NaN 171440 35 0 24051 0.261 + 10073 IFFENHPYF 9 67 607.2878829273457 1212.5612129214912 2 607.789306640625 MULTI HCD FTMS 0 0 0 16327 32590.67578125 0.32398215196320485 18 -0.48731231689453125 6 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 24.020572477871973 0.15282392193088168 1 SE{M(Oxidation (M))|F}E{I|L} 5 7 34.597 0 0 2.8532 0 0 589.2521839826187 0 589.2521839826187 0 26.49797211252192 0 0 0 0.805462187404089 0 0 0 SE{M(Oxidation (M))|F}E{I|L} 2.8532 - 108 NaN NaN 104967.2 NaN 12999 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16334 69.766 NaN 227150 35 0 14271 0.261 -1 VYYMIVCLI 9 66 595.3016541927266 NaN 0 595.3216552734375 PEAK HCD FTMS 0 0 0 16327 26614.58203125 0.48557725029610355 12 -0.33734893798828125 7 Carbamidomethyl (C),Oxidation (M) _VYYM(Oxidation (M))IVC(Carbamidomethyl (C))LI_ ENSG00000037749|ENST00000522782|MFAP3;nc|ENSG00000037749|P55082-2|MFAP3 9.347437153973935 0.2499504662953367 1 {I|L} 1 -1 10.242 0 0 0.86172 0 0 612.3174674657281 460.1623629205688 1072.479830386297 0 0 0 0 0 0.3252574989159953 0 0 0 {I|L} 0.86172 + + 15 + NaN NaN 125166.8 NaN 13000 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16335 69.769 NaN 128460 35 0 19291 0.264 + -1 NYCRMRNGR 9 60 409.52573009437424 1225.5553608833227 3 409.8609924316406 MULTI HCD FTMS 0 0 0 16327 5159.45263671875 0.012729175438242108 20 -0.5424270629882812 8 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))RMRNGR_ REV__nc|ENSG00000204424|Q5SQ64-2|LY6G6F 4.897010918128616 0.31389406404703984 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3863 0 0 1060.4763488977742 0 1060.4763488977742 0 5.752574989159953 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3863 + + 15 + NaN NaN 92220.1 NaN 13001 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16336 69.773 NaN 338080 35 0 82508 0.261 + 1971 DALPEYSTF 9 56 521.7409856694155 NaN 0 521.7413940429688 PEAK HCD FTMS 0 0 0 16327 19345.31640625 0.6563678797820139 1 -0.03615570068359375 9 Unmodified _DALPEYSTF_ ENSG00000115364|ENST00000393909|MRPL19 19.256988751693697 0.19238547928067054 1 ST 2 7 10.969 0 0 1.0532 0 0 688.3088013175435 162.05584131412346 850.3646426316669 0 0 0 0 0 1 0 0 0 + ST 1.0532 + + 8 + NaN NaN 128259.9 NaN 13002 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16337 69.776 NaN 186440 35 0 74144 0.261 + 8266 GTNDAEDCC 9 38 464.14295149878393 NaN 0 464.58184814453125 PEAK HCD FTMS 0 0 0 16327 42820.171875 0.4289723608936523 113 -3.1527023315429688 10 Unmodified _GTNDAEDCC_ ENSG00000172724|ENST00000311925|CCL19 0.45834013312273997 0.29302578994899664 1 Q 1 9 1.9897 0 0 0.21481 0 0 305.4384776051866 489.74494348697505 795.1834210921617 0 0 0 0 0 0 0 0 0 Q 0.21481 - 1 + NaN NaN 104280.4 NaN 13003 3332 16327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16339 69.781 NaN 2439700 35 0 577060 0.327 + 24427 RYLDEINLL 9 104 574.8189054301534 1147.6232579271068 2 574.8192749023438 MULTI HCD FTMS 0 0 0 16338 1321887.375 0.08625640151090763 10 -0.27513885498046875 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 100.0907132914201 0.004261551473353346 1 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 80.355 0 0 7.0019 7.0019 87.063 0 0 0 9.71971276399755 16.478174818886373 9.71971276399755 4.744237387763093 0 2.004432191740108 1.0969100130080565 0.6549471895720985 0.5501648626366046 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[YR]{I|L}DE{I|L}N{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}N{I|L}{I|L};[Y{I|L}]DRE{I|L}GG{I|L}{I|L};[Y{I|L}]DR{I|L}EN{I|L}{I|L};[YN]D{I|L}[KG]VN{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[QT][YG]{I|L}N{I|L}{I|L} 7.0019;6.5885;6.1995;6.1549;6.0576;5.9639;5.7861;5.6442;5.5904;5.575 -;-;-;+;-;-;-;-;-;- + 4170 NaN NaN 446036.5 NaN 13004 3333 16338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16340 69.785 NaN 619280 35 0 81873 0.261 + 4430 EYGKFFVTL 9 63 552.2922455325703 1102.5699381319405 2 552.2925415039062 MULTI HCD FTMS 0 0 0 16338 273442.78125 0.20039316149902 6 -0.1671905517578125 2 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 53.832793166522166 0.026208976789938845 1 [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L} 9 0 + 41.633 0 0 3.776 3.776 88.183 0 0 0 13.964234943306053 7.121892823592972 7.121892823592972 26.280994675737755 0 1.1237125054200234 1.154901959985743 0.3494850021680094 0 + + [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L};[KG][RH]{M(Oxidation (M))|F}[MN]T{I|L} 3.776;1.3924 +;- + 304 + NaN NaN 172716.7 NaN 13005 3333 16338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16341 69.789 NaN 250810 35 0 16657 0.261 + -1 LCMKNWIMV 9 76 605.792543883473 1209.5705348337458 2 606.31591796875 MULTI HCD FTMS 0 0 0 16338 10209.8330078125 0.033579671494131734 -19 0.5510711669921875 3 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))MKNWIM(Oxidation (M))V_ REV__ENST00000439174.6_1_17:63007720-63007828:-|nuORF 8.593279151180031 0.2858735984551981 1 [YT]R{I|L}WAVGV 9 -1 72.145 0 0 5.9645 0 0 0 160.978076291971 160.978076291971 55.15031251017078 0 0 0 0 0 1.6989700043360187 0.3494850021680094 0.8807196863200843 [YT]R{I|L}WAVGV 5.9645 - 1330 NaN NaN 118513.3 NaN 13006 3333 16338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16342 69.792 NaN 266820 35 0 22037 0.261 + -1 GFCYTNEEFK 10 78 647.7766210837813 1293.5386892343624 2 647.7757568359375 MULTI HCD FTMS 0 0 0 16338 79272.0703125 0.7955110825456355 -1 0.03615570068359375 4 Carbamidomethyl (C) _GFC(Carbamidomethyl (C))YTNEEFK_ REV__ENSG00000177646|ENST00000308982|ACAD9;REV__ENST00000511325.1_1_3:128623240-128628375:+|nuORF 21.536976647645854 0.3096624038397699 1 VYMD{[CP]|[EA]}YEK{M(Oxidation (M))|F} 10 -1 + 72.49 0 0 5.604 5.604 91.084 0 0 0 44.43189054624234 10.012262311882765 10.012262311882765 28.23976127281977 0 2.079689690656103 1.5228787452803376 0.6109243748081782 0 VYMD{[CP]|[EA]}YEK{M(Oxidation (M))|F};VYMCC[SG]{M(Oxidation (M))|F}KAW;VYMD{[CP]|[EA]}[WH]P{M(Oxidation (M))|F};VYMCC[YQ]KAW;[YV][WH]{[CP]|[EA]}DMP{M(Oxidation (M))|F};[YV][WH]{[CP]|[EA]}TMEE;[YV]MDW[C(Carbamidomethyl (C))Q][RH];{[CT]|[{M(Oxidation (M))|F}G]}AK{M(Oxidation (M))|F}[SG]CCMP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{M(Oxidation (M))|F}[SG]CCMP{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]MTW[C(Carbamidomethyl (C))Q][RH] 5.604;3.4208;2.6807;2.6763;2.5027;1.7724;1.691;1.5378;1.4921;1.1191 -;-;-;-;-;-;-;-;-;- 431 + NaN NaN 122983.7 NaN 13007 3333 16338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16343 69.795 NaN 250250 35 0 21291 0.264 -1 MPDVDFNL 8 58 483.7158656783491 965.4171784234982 2 483.7154235839844 MULTI HCD FTMS 0 0 0 16338 116662.234375 0.5891655441847546 -15 0.44704437255859375 5 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 34.10243960390752 0.30669083636501265 1 D{M(Oxidation (M))|F}N{I|L} 4 -1 34.984 0 0 3.6237 0 0 458.1845875470719 0 458.1845875470719 0 9.534226059983041 0 0 0 0.6694451763165201 0 0 0.3252574989159953 D{M(Oxidation (M))|F}N{I|L} 3.6237 + + 179 NaN NaN 114202.9 NaN 13008 3333 16338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16344 69.799 NaN 68364 35 0 5818.4 0.261 + 16589 LVGQEFEL 8 44 467.7471335643137 933.4797141954274 2 467.7475891113281 MULTI HCD FTMS 0 0 0 16338 18624 0.5777920348400158 1 -0.022918701171875 6 Unmodified _LVGQEFEL_ ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF;nc|ENSG00000054654|Q8WXH0|SYNE2 13.042465956692817 0.497831663890332 1 E{M(Oxidation (M))|F}E{I|L} 4 4 33.034 0 0 3.5388 0 0 397.233202049025 0 397.233202049025 0 11.351518780601921 0 0 0 0.8252574989159953 0 0 0 + E{M(Oxidation (M))|F}E{I|L} 3.5388 + + 36 NaN NaN 84787.9 NaN 13009 3333 16338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16346 69.804 NaN 4433000 35 0 505070 0.327 + 19740 NYAWVYYHL 9 100 614.7929287250602 1227.5713045169202 2 614.793212890625 MULTI HCD FTMS 0 0 0 16345 2961791.75 0.05278527582192382 23 -0.600860595703125 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 1 [YN]AWVYYH{I|L} 9 0 + 123.44 0 0 10.056 10.056 96.422 0 0 0 28.1246936830415 16.478174818886373 16.478174818886373 16.588709367037282 0 2.8494850021680094 1.6989700043360187 0 2.635151878060192 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};[YN]AVWYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYADAV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}YAVYYH{I|L};[YN]WAVW[YN]{I|L};[YN]AVWW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L} 10.056;8.7043;8.6492;7.7645;7.2055;6.912;5.9144;5.8541;5.799;5.7237 +;-;-;+;-;-;-;-;-;- + 3384 NaN NaN 565190.9 NaN 13010 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16347 69.808 NaN 502210 35 0 122770 0.261 + 34166 YPDENGFDAF 10 71 587.7379859142688 1173.4614188953376 2 587.73828125 MULTI HCD FTMS 0 0 0 16345 282153.84375 0.7536635296445047 1 -0.03285980224609375 2 Unmodified _YPDENGFDAF_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 74.19965305603844 0.012609120674105788 1 [YT]SWN[NG]DAT 10 5 63.778 0 0 5.435 0 0 0 60.99434203739899 60.99434203739899 36.56681865368853 0 0 0 0 1 2 0.805462187404089 0.805462187404089 [YT]SWN[NG]DAT 5.435 - 542 NaN NaN 155792.6 NaN 13011 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16348 69.812 NaN 562630 35 0 29252 0.261 -1 YNAPTDHGLCI 11 95 630.7877655450172 1259.5609781568344 2 630.7879638671875 MULTI HCD FTMS 0 0 0 16345 250822.65625 0.0757580119395682 22 -0.5779571533203125 3 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 36.506200033944 0.15945123241780773 1 YNA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 73.881 0 0 5.8657 0 0 0 265.1298922174438 265.1298922174438 54.14442544444192 0 0 0 0 2.079689690656103 1.6989700043360187 0.6989700043360187 0 YNA{[MS]|[{M(Oxidation (M))|F}A]}VYY 5.8657 - 2474 + NaN NaN 170657.9 NaN 13012 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16349 69.815 NaN 271250 35 0 42152 0.264 + 2024 DDLMPINL 8 55 473.73104613587077 945.4475393385416 2 473.7309265136719 MULTI HCD FTMS 0 0 0 16345 157220.921875 0.49382826262505897 -15 0.440643310546875 4 Oxidation (M) _DDLM(Oxidation (M))PINL_ ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B 42.09456458481378 0.20402248593209013 1 {I|L}N{I|L} 3 5 37.307 0 0 3.946 0 0 587.2255493675012 0 587.2255493675012 0 22.703037561203843 0 0 0 0.7614393726401688 0 0 0.3494850021680094 + {I|L}N{I|L} 3.946 + + 94 NaN NaN 127055.7 NaN 13013 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16350 69.818 NaN 338170 35 0 38322 0.261 + 1163 AYLESFYKF 9 62 584.289645907993 1166.5647388827858 2 584.2916259765625 MULTI HCD FTMS 0 0 0 16345 100537.0703125 0.005452852727384456 76 -2.1017532348632812 5 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 70.33199760932243 0.0089807860198535 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 93.821 0 0 8.0425 8.0425 95.822 0 0 0 24.76203644159419 47.90362458673968 24.76203644159419 37.2062251842808 0 2.892159058960253 2 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP][Q{I|L}]WG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))K]{I|L}DDK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP][Q{I|L}]{M(Oxidation (M))|F}GW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[ES]|[DT]|[{I|L}C]};[YR]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}HPG{M(Oxidation (M))|F} 8.0425;4.8531;4.16;4.1065;3.9959;3.1387;3.0797;2.8576;2.3678;1.8632 +;-;-;-;-;-;-;-;-;- + 438 NaN NaN 142589.9 NaN 13014 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16351 69.822 NaN 241170 35 0 18430 0.261 + 26767 SYGDILHVI 9 64 508.77408775248415 1015.5336225717683 2 508.774169921875 MULTI HCD FTMS 0 0 0 16345 39697.30078125 0.04781535967356872 16 -0.4282379150390625 6 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 28.486842064014134 0.11819662193267319 1 [YV]EVG{I|L}[HS]{I|L} 9 5 + 29.509 0 0 2.9057 2.9057 81.201 0 0 0 4.771212547196619 0.6155175774390713 0.6155175774390713 4.771212547196619 0 0 1.3979400086720375 0 0 [YV]EVG{I|L}[HS]{I|L};[Y{I|L}]DVG{I|L}[HS]{I|L};{NN|[MP]|[D{I|L}]|[EV]}YVG{I|L}[HS]{I|L};[YV]EV[H{I|L}][SG]{I|L};[Y{I|L}]DV[H{I|L}][SG]{I|L};[VP]{[QV]|[N{I|L}]|[RA]|[KV]}[PS]YN{I|L} 2.9057;2.4359;1.3107;1.0594;0.58954;0.36324 -;-;-;-;-;- 400 NaN NaN 119788.5 NaN 13015 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16352 69.825 NaN 217470 35 0 8096.4 0.261 + 2953 DYVEGLRVF 9 71 549.2849270367394 1096.5553011402787 2 549.7503662109375 MULTI HCD FTMS 0 0 0 16345 23165.33984375 0.02059614115306914 22 -0.5779571533203125 7 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 47.594388314883695 0.03493607795751234 1 {[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F} 9 0 + 61.85 0 0 5.6404 5.6404 91.063 0 0 0 13.301208380675362 40.42342188037523 13.301208380675362 26.98970004336018 0 2.1549471895720984 2 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}T][PS]RV{M(Oxidation (M))|F};[Y{I|L}]DD{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[QN]|[E{I|L}]|[KN]}[PS]RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V{[QG]|[NA]}[KP][YK];{[YD]|[{M(Oxidation (M))|F}M]}V[PG][KQ][YK] 5.6404;3.1791;2.9779;2.0094;1.579;1.4906 +;-;-;-;-;- + 303 NaN NaN 114827.1 NaN 13016 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16353 69.828 NaN 83178 35 0 8635 0.261 -1 LMPSGSWTV 9 39 497.23781068005337 NaN 0 497.2379455566406 PEAK HCD FTMS 0 0 0 16345 39460.38671875 0.9342670770396361 -4 0.114837646484375 8 Oxidation (M) _LM(Oxidation (M))PSGSWTV_ SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|1|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|15|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|1|1|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|15|2|sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|26|3|sense 10.823927491677226 0.2427956001690155 1 T 1 -1 11.237 0 0 1.1322 0 0 117.07955502832426 771.3142794244749 888.3938344527992 0 0 0 0 0 0.4247425010840047 0 0 0 T 1.1322 + + 3 + NaN NaN 98823.8 NaN 13017 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16354 69.832 NaN 172840 35 0 17821 0.261 + -1 MHHELVDF 8 59 522.233322277081 NaN 0 522.2454223632812 PEAK HCD FTMS 0 0 0 16345 8972.6318359375 0.5394978311400076 -1 0.022918701171875 9 Oxidation (M) _M(Oxidation (M))HHELVDF_ REV__ENSG00000198915|ENST00000395810|RASGEF1A;REV__nc|ENSG00000198915|Q8N9B8-2|RASGEF1A 5.230669730166228 0.38822285293237185 1 PA 2 -1 6.4537 0 0 0.61908 0 0 147.0441851583284 724.2990206354124 871.3432057937407 0 0 0 0 0 0 0 0 0 PA 0.61908 - 6 + NaN NaN 113148.2 NaN 13018 3334 16345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16356 69.837 NaN 1410700 35 0 239810 0.327 + 31814 VYMDWYEKF 9 78 640.7862258131424 1279.5578986930848 2 640.7865600585938 MULTI HCD FTMS 0 0 0 16355 1080393.25 0.9821035864867192 1 -0.029541015625 1 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 128.93241758739586 0.0006697181619526092 1 VYMDWYEK{M(Oxidation (M))|F} 9 0 + 117.49 0 0 9.182 9.182 95.564 0 0 0 79.76403468139864 12.191964632593582 12.191964632593582 15.752574989159953 0 2.973197507588033 2 1.3098943791441968 0.3054621874040891 + + VYMDWYEK{M(Oxidation (M))|F};[YV]MDWYEK{M(Oxidation (M))|F};[YV]MDWEYK{M(Oxidation (M))|F};[YV]MDWYE{M(Oxidation (M))|F}K;[YV]MDWEY{M(Oxidation (M))|F}K;VY{[HG]|PP}EWDMP{M(Oxidation (M))|F};[YV]MDWYT[VG]{M(Oxidation (M))|F};[YV]MDWE{[HG]|PP}P{M(Oxidation (M))|F};[YV][WD]MYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWDMP{M(Oxidation (M))|F} 9.182;7.9509;7.3837;7.1829;6.6157;6.3322;6.2908;6.1522;5.9393;5.8482 +;+;-;-;-;-;-;-;-;- + 3272 + NaN NaN 300311 NaN 13019 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16357 69.841 NaN 1179300 35 0 287360 0.261 + 7798 FYPPKVELF 9 54 570.3105901170402 1138.6066273008803 2 570.3106689453125 MULTI HCD FTMS 0 0 0 16355 642963.9375 0.44635329126350665 6 -0.17041778564453125 2 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 36.12702656103203 0.08312389501731911 1 [Y{M(Oxidation (M))|F}]P{[QV]|[N{I|L}]|[RA]|[KV]}[EP]{I|L}{M(Oxidation (M))|F} 9 2 + 34.159 0 0 3.0001 3.0001 88.093 0 0 0 5.430599746173222 15.206896739454624 5.430599746173222 34.15932166674147 0 1.8807196863200843 0 0 0 [Y{M(Oxidation (M))|F}]P{[QV]|[N{I|L}]|[RA]|[KV]}[EP]{I|L}{M(Oxidation (M))|F} 3.0001 - 142 NaN NaN 258612.5 NaN 13020 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16358 69.845 NaN 783230 35 0 48083 0.261 + -1 TPSWHSTPAVC 11 103 621.7823641191582 1241.5501753051162 2 621.7833251953125 MULTI HCD FTMS 0 0 0 16355 375673.625 0.08284362229124015 21 -0.5450973510742188 3 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 1 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 81.629 0 0 6.5748 6.5748 91.869 0 0 0 28.278041712858574 22.42366257450061 22.42366257450061 18.864554064455128 0 1.8494850021680094 1.5228787452803376 0.9049471895720984 1.1443525400371293 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][WQ]V;[YN]AW[{M(Oxidation (M))|F}E]{[QV]|[N{I|L}]|[RA]|[KV]}W;[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN][NS][KT]CYH{I|L};[YN]AWVYP[SG]W;[YN]G[SG][KT]CYH{I|L};[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}{[DA]|[EG]};[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SPY;[YN]APYVW[SG]W 6.5748;5.0554;4.9135;4.8596;4.6636;4.5255;4.4658;4.4024;4.3652;4.2496 -;-;-;-;-;-;-;-;-;- 6410 NaN NaN 211386.5 NaN 13021 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16359 69.848 NaN 265910 35 0 30269 0.261 + 1164 AYLESFYKF 9 59 584.289645907993 1166.5647388827858 2 584.2894287109375 MULTI HCD FTMS 0 0 0 16355 130592.9296875 0.007082999441003935 77 -2.12420654296875 4 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 63.960520009940105 0.0120409805053046 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 9 3 + 55.123 0 0 4.7253 4.7253 83.401 0 0 0 7.63937064603077 14.729524540212324 7.63937064603077 5.457574905606748 0 1.5 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP][Q{I|L}]{M(Oxidation (M))|F}GW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP][Q{I|L}]WG{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G[KS][DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]E{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KS][DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[ES]|[DT]|[{I|L}C]};[YK]{[QG]|[NA]}[DV]E{I|L}{[ES]|[DT]|[{I|L}C]} 4.7253;4.2574;4.1699;2.8625;2.8025;2.7938;2.6849;2.3128;2.2607;1.7284 -;-;-;-;-;-;-;-;-;- 466 NaN NaN 122831.8 NaN 13022 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16360 69.851 NaN 548460 35 0 223930 0.264 + -1 NRIRITMYF 9 36 410.55343159526205 1228.6384653859861 3 410.55364990234375 MULTI HCD FTMS 0 0 0 16355 205855.828125 0.29503395221885925 -3 0.0919342041015625 5 Oxidation (M) _NRIRITM(Oxidation (M))YF_ REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1 4.189502756095605 0.319257502753388 1 Y{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5206 0 0 900.4958700264143 0 900.4958700264143 0 25.48455006504028 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F} 2.5206 + + 8 + NaN NaN 171182.6 NaN 13023 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16361 69.855 NaN 84485 35 0 17992 0.261 -1 LPDMEVVGL 9 25 494.7544276908168 987.4943024484336 2 494.7545471191406 MULTI HCD FTMS 0 0 0 16355 36734.8125 0.44447124810047994 7 -0.19652557373046875 6 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 11.640296217721598 0.25978676193971967 1 VG{I|L} 3 -1 36.198 0 0 3.6656 0 0 700.3099311993825 0 700.3099311993825 0 33.979400086720375 0 0 0 1 0 0 0 VG{I|L} 3.6656 + + 13 NaN NaN 95188.7 NaN 13024 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16362 69.858 NaN 137350 35 0 38545 0.261 + 12256 KLLDRWTKLF 10 37 440.5990379869836 1318.7752845611508 3 440.599365234375 MULTI HCD FTMS 0 0 0 16355 56213.9296875 0.09441599095796202 23 -0.5974655151367188 7 Unmodified _KLLDRWTKLF_ REV__ENSG00000205208|ENST00000379205|C4orf46;REV__ENST00000508836.1_1_4:159590767-159593157:-|nuORF 5.40270961882225 0.4467063037482923 1 {I|L}{M(Oxidation (M))|F} 2 -1 22.474 0 0 1.7042 0 0 1040.6126086351726 0 1040.6126086351726 0 22.47425010840047 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7042 + + 10 + NaN NaN 95621.3 NaN 13025 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16363 69.861 NaN 239860 35 0 15910 0.261 + 28761 TTGMLILYIFL 11 57 642.8690107281964 NaN 0 642.869140625 PEAK HCD FTMS 0 0 0 16355 33474.2421875 0.7684165540414518 -1 0.03285980224609375 8 Unmodified _TTGMLILYIFL_ ENST00000415215.1_1_X:73167175-73167235:+|nuORF 5.731851221503515 0.3258605322397891 1 {I|L}T 2 10 26.638 0 0 2.0751 0 0 390.1538563459 676.4139158324588 1066.5677721783588 0 0 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {I|L}T 2.0751 - 27 NaN NaN 122701.5 NaN 13026 3335 16355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16365 69.866 NaN 806450 35 0 103770 0.327 + 30059 VFSTVVIHF 9 83 524.7950064029178 1047.5754598726355 2 524.7949829101562 MULTI HCD FTMS 0 0 0 16364 380324.53125 0.7527429096273206 2 -0.05571746826171875 1 Unmodified _VFSTVVIHF_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 139.54400939418784 2.61670173137287E-05 1 V{M(Oxidation (M))|F}STVV{I|L}H{M(Oxidation (M))|F} 9 0 + 87.885 0 0 8.3894 8.3894 93.39 0 0 0 61.687522094009 16.478174818886373 16.478174818886373 11.104159301997 0 2.822682509756042 0 0.805462187404089 0 + + V{M(Oxidation (M))|F}STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{[MG]|[TS]}V{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V]V{[MG]|[TS]}[H{I|L}]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V{[MG]|[TS]}[H{I|L}]{M(Oxidation (M))|F}V 8.3894;7.3294;5.4768;4.6349;4.1386;2.7823;1.4441 +;+;-;-;-;-;- + 292 + NaN NaN 210542 NaN 13027 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16366 69.87 NaN 862020 35 0 158290 0.261 + 29877 VFDEAIRAVL 10 97 566.8216788775242 1131.6288048218482 2 566.8218994140625 MULTI HCD FTMS 0 0 0 16364 288594.625 0.40911194757429026 5 -0.14087677001953125 2 Unmodified _VFDEAIRAVL_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 55.23464941255904 0.058752269732683056 1 [YT]PEA{I|L}RAV{I|L} 10 3 + 63.855 0 0 5.6427 5.6427 86.205 0 0 0 10.395906230238126 42.427834771286186 10.395906230238126 8.45098040014257 0 2.128144697160131 1.5228787452803376 0 0 [YT]PEA{I|L}RAV{I|L};[YT]PEA{I|L}RA{I|L}V;[{M(Oxidation (M))|F}V]DEA{I|L}RAV{I|L};[YT]PEA{I|L}RG{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RAV{I|L};[YT]PEA{I|L}GR{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[QA]A{I|L}GVAV{I|L};[YQ][QA]A{I|L}GVAV{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RA{I|L}V;[{M(Oxidation (M))|F}V]DEA{I|L}RG{I|L}{I|L} 5.6427;4.8959;4.7162;4.6536;4.4074;4.3836;4.0675;4.0152;3.9694;3.7271 -;-;+;-;-;-;-;-;-;- + 2009 NaN NaN 208222.8 NaN 13028 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16367 69.874 NaN 1008700 35 0 71928 0.261 + 2757 DYAIWNTKF 9 105 579.2838073673369 1156.5530618014736 2 579.797119140625 MULTI HCD FTMS 0 0 0 16364 30896.6796875 0.6613304049194411 -2 0.06240081787109375 3 Unmodified _DYAIWNTKF_ ENSG00000181544|ENST00000650831|FANCB;FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant 45.739877483867886 0.03899552410870734 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K 8 5 73.045 0 0 6.3158 0 0 0 161.03557070436446 161.03557070436446 10.662290030508146 0 0 0 0 0.2742275032520141 2 0.7786596949921221 1.341129063296272 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K 6.3158 - 3799 NaN NaN 261361.4 NaN 13029 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16368 69.877 NaN 633860 35 0 183950 0.261 + 5773 FPANVMDVI 9 59 511.25409607697145 1020.4936392207429 2 511.2547607421875 MULTI HCD FTMS 0 0 0 16364 377549.53125 0.6745155347123356 -16 0.4669647216796875 4 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 41.8396318013385 0.056899836730939755 1 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 5 + 66.744 0 0 6.5404 6.5404 92.377 0 0 0 21.690222690762283 55.204262829037845 21.690222690762283 23.93575203269588 0 1.2302046884880937 1.5228787452803376 0 0.3807196863200844 [DV][WK]{M(Oxidation (M))|F}DV{I|L};[VS]{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F}DV{I|L} 6.5404;4.1949 -;- 98 NaN NaN 184504.1 NaN 13030 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16369 69.881 NaN 469690 35 0 53327 0.261 + 12885 KYFQGDLQLF 10 87 629.8265548711906 1257.6385568091812 2 629.8270874023438 MULTI HCD FTMS 0 0 0 16364 188263 0.5817790199709092 1 -0.02622222900390625 5 Unmodified _KYFQGDLQLF_ ENSG00000005882|ENST00000503176|PDK2;ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2 47.7319792270244 0.08603782309361356 1 C(Carbamidomethyl (C))E{I|L}Q[DG]{I|L}Q{I|L}{M(Oxidation (M))|F} 10 3 C(Carbamidomethyl (C))E{I|L} + + 65.138 21.925 5.0031 5.1794 5.1794 61.89 0 0 0 0 26.741115296921265 0 0 0 2.079689690656103 0 0 0.9604093769761877 C(Carbamidomethyl (C))E{I|L}Q[DG]{I|L}Q{I|L}{M(Oxidation (M))|F} 5.1794 - 3032 NaN NaN 151030.9 NaN 13031 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16370 69.884 NaN 287420 35 0 41327 0.261 + 27043 SYMFVDENTF 10 66 634.7603224134787 1267.5060918937572 2 634.7606201171875 MULTI HCD FTMS 0 0 0 16364 97888.15625 0.6018795447735219 3 -0.08187103271484375 6 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 46.0223103267499 0.09314584965737738 1 {M(Oxidation (M))|F}VDENT{M(Oxidation (M))|F} 7 3 46.508 0 0 3.6692 0 0 397.12922866035314 0 397.12922866035314 0 36.33040103922362 0 0 0 1.610924374808178 0 0 0 + {M(Oxidation (M))|F}VDENT{M(Oxidation (M))|F} 3.6692 + + 75 NaN NaN 128282.3 NaN 13032 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16371 69.887 NaN 123580 35 0 5392.3 0.261 + -1 FPRFFFQMK 9 62 632.3216755203915 1262.628798107583 2 632.3214111328125 MULTI HCD FTMS 0 0 0 16364 17906.828125 0.33735397621819563 -6 0.17723846435546875 7 Oxidation (M) _FPRFFFQM(Oxidation (M))K_ REV__ENSG00000172289|ENST00000307552|OR10V1 10.823927491677226 0.26684000660059787 1 [YN]A[HK]NWAN 9 -1 30.423 0 0 2.4095 0 0 0 161.09426830893304 161.09426830893304 4.225082001627744 0 0 0 0 0 1.6989700043360187 0 0 [YN]A[HK]NWAN 2.4095 - 152 NaN NaN 105832.7 NaN 13033 3336 16364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16373 69.892 NaN 405850 35 0 30143 0.327 + 10049 IFDRVLTEL 9 75 553.3161489101512 1104.6177448871024 2 553.31640625 MULTI HCD FTMS 0 0 0 16372 94464.03125 0.602294992044547 1 -0.0294952392578125 1 Unmodified _IFDRVLTEL_ ENSG00000143171|ENST00000359842|RXRG;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000186350|P19793-2|RXRA 43.981846655682396 0.04706587046877104 1 {I|L}{M(Oxidation (M))|F}T{I|L} 4 5 54.998 0 0 4.9789 0 0 0 627.3263623036352 627.3263623036352 41.79805664215991 0 0 0 0 0.7742275032520141 2 0.8494850021680094 0 {I|L}{M(Oxidation (M))|F}T{I|L} 4.9789 - 557 + NaN NaN 160471.6 NaN 13034 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16374 69.897 NaN 280700 35 0 35103 0.261 + 34020 YMLVPIEKKFF 11 46 472.263885296917 1413.7698264909511 3 472.2763977050781 MULTI HCD FTMS 0 0 0 16372 16950.90234375 0.34368110131764334 3 -0.0851287841796875 2 Unmodified _YMLVPIEKKFF_ REV__tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1 7.477065608646677 0.3861287967437539 1 V{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 21.471 0 0 1.5187 0 0 602.3251591163596 0 602.3251591163596 0 9.788107009300617 0 0 0 0 0 0.8494850021680094 0 V{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.5187 - 61 + NaN NaN 121466.6 NaN 13035 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16375 69.9 NaN 186420 35 0 32912 0.261 -1 MPDLPNVGL 9 40 486.24694600107915 970.4793390689583 2 486.2470397949219 MULTI HCD FTMS 0 0 0 16372 90508.0078125 0.6319204273987451 -1 0.02622222900390625 3 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 18.1463463914782 0.20357593197100715 1 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.2947074470785 0 683.2947074470785 0 36.197887582883936 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 16 NaN NaN 108471.5 NaN 13036 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16376 69.904 NaN 263310 35 0 41250 0.261 -1 EPIPYEFMA 9 66 556.7520403406618 1111.4895277481235 2 556.7525634765625 MULTI HCD FTMS 0 0 0 16372 87088.640625 0.4967214815324445 8 -0.20905303955078125 4 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 34.10243960390752 0.09241788333544565 1 {I|L}A[QT]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 8 -1 51.419 0 0 4.6262 0 0 186.07905776191564 0 186.07905776191564 0 29.965846974768482 0 0 0 1 0 0.805462187404089 0 {I|L}A[QT]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4.6262 - 169 NaN NaN 127008.3 NaN 13037 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16377 69.907 NaN 530970 35 0 87171 0.261 + 16927 LYGRLLVTF 9 70 541.3238242159241 1080.6330954986481 2 541.32421875 MULTI HCD FTMS 0 0 0 16372 269561.90625 0.2777773806147157 -6 0.17059326171875 5 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 85.64151623876279 0.004640175941193596 1 [Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F} 9 2 + 77.954 0 0 7.2138 7.2138 87.164 0 0 0 9.018637558036673 16.478174818886373 9.018637558036673 3.979400086720375 0 2.305462187404089 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}TV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]A[RV]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]A[RV]T{I|L}V{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}TV{M(Oxidation (M))|F} 7.2138;6.8455;6.6289;6.3792;6.3095;6.2606;6.031;5.9413;5.8876;5.7943 -;+;-;-;-;-;-;-;-;- + 1282 NaN NaN 160878 NaN 13038 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16378 69.91 NaN 302990 35 0 29778 0.261 + 17597 LYWRSLATL 9 79 561.8189609741303 1121.6233690150605 2 561.8192749023438 MULTI HCD FTMS 0 0 0 16372 118338.28125 0.07866812102429256 14 -0.36583709716796875 6 Unmodified _LYWRSLATL_ REV__ENSG00000198133|ENST00000554480|TMEM229B 37.97399986684836 0.07464525285885698 1 [Y{I|L}]RWATVT{I|L} 9 -1 + 80.671 0 0 7.1923 7.1923 87.549 0 0 0 21.751736484954378 46.509009156570684 21.751736484954378 4.89909385331508 0 0.7614393726401688 1.6989700043360187 0.7742275032520141 0.3252574989159953 [Y{I|L}]RWATVT{I|L};[Y{I|L}]RAWTVT{I|L};[Y{I|L}]N{M(Oxidation (M))|F}[RP]VT{I|L};[Y{I|L}]GG{M(Oxidation (M))|F}[RP]VT{I|L} 7.1923;6.7555;5.0873;4.2663 -;-;-;- 1168 NaN NaN 128681.4 NaN 13039 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16379 69.914 NaN 180010 35 0 10621 0.261 + -1 YFMQSCNKC 9 62 598.729109285094 1195.4436656369878 2 598.7291870117188 MULTI HCD FTMS 0 0 0 16372 35779.2734375 0.4700864781084646 -1 0.02622222900390625 7 Carbamidomethyl (C),Oxidation (M) _YFM(Oxidation (M))QSC(Carbamidomethyl (C))NKC_ REV__ENSG00000118156|ENST00000391901|ZNF541;REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 4.3292370932331545 0.3181982124262546 1 YP 2 -1 22.717 0 0 1.9003 0 0 0 932.3050380263853 932.3050380263853 7.231975075880328 0 0 0 0 0.3252574989159953 0 0 0 YP 1.9003 - 63 + NaN NaN 119466.6 NaN 13040 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16380 69.917 NaN 185050 35 0 12676 0.262 + 32693 WPLKDLTL 8 61 493.28945192840405 984.5643509236081 2 493.28955078125 MULTI HCD FTMS 0 0 0 16372 59746.703125 0.6699485561846987 -1 0.02622222900390625 8 Unmodified _WPLKDLTL_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-6|ALS2CL 34.40172386719151 0.3028461740636462 1 WP{I|L} 3 5 40.445 0 0 4.1079 0 0 0 585.3265258299266 585.3265258299266 23.50711233356286 0 0 0 0 0.4247425010840047 1.3010299956639813 0 0 + WP{I|L} 4.1079 + + 33 + NaN NaN 108215.3 NaN 13041 3337 16372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16382 69.922 NaN 1439300 35 0 376650 0.326 + 24428 RYLDEINLL 9 103 574.8189054301534 1147.6232579271068 2 574.8194580078125 MULTI HCD FTMS 0 0 0 16381 960367.75 0.06266635706550035 15 -0.391357421875 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 83.42873516780209 0.004742894019233849 1 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 87.744 0 0 7.6457 7.6457 89.996 0 0 0 11.706962271689747 56.44016261540408 11.706962271689747 9.075221787320515 0 1.9361818737241734 1 0.566901560044258 0.6549471895720985 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};[Y{I|L}]DRE{I|L}GG{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}N{I|L}{I|L};[Y{I|L}]DR{I|L}EN{I|L}{I|L};[Y{I|L}]RD{I|L}EGG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[QT][YG]{I|L}N{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}GG{I|L}{I|L} 7.6457;6.8549;6.8433;6.5775;6.0525;6.0419;5.7868;5.7752;5.4434;5.2395 -;-;-;-;-;-;-;-;-;- 3010 NaN NaN 304163.2 NaN 13042 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16383 69.926 NaN 1423500 35 0 105710 0.261 + 7761 FYNLLTRTF 9 93 587.8165257685989 1173.6184986039978 2 587.8167724609375 MULTI HCD FTMS 0 0 0 16381 645135.0625 0.9545704781905503 -2 0.05571746826171875 2 Unmodified _FYNLLTRTF_ ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT 133.0521902211835 0.0004198702180815479 1 [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 9 0 + 84.976 0 0 7.2405 7.2405 92.878 0 0 0 4.66621474099405 64.78162963600796 4.66621474099405 16.822581265925436 0 2.9247425010840047 0 0.7302046884880937 0.7614393726401688 + + [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]GG{I|L}{I|L}TRT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}Y{I|L}TRT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{M(Oxidation (M))|F}{I|L}TRT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}Y{I|L}T[VG]T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{M(Oxidation (M))|F}{I|L}T[VG]T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][KA]{I|L}ERT{M(Oxidation (M))|F};{[WT]|[RM]}H{I|L}{I|L}T[VG]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{M(Oxidation (M))|F}{I|L}TRT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}Y{I|L}T[SG]{I|L}{M(Oxidation (M))|F} 7.2405;5.8071;5.7325;5.6831;4.9479;4.8985;4.6066;4.5121;4.3997;3.9263 +;-;-;-;-;-;-;-;-;- + 1501 NaN NaN 291843.5 NaN 13043 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16384 69.93 NaN 1514200 35 0 87613 0.261 + 3612 EKQGLILVSM 10 112 559.3182207435848 1116.6218885539695 2 559.3062133789062 MULTI HCD FTMS 0 0 0 16381 14508.5751953125 0.07666049059969707 14 -0.365234375 3 Unmodified _EKQGLILVSM_ REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF 14.838274106304384 0.3723198072575719 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AH{I|L}{I|L}{I|L}T 8 -1 59.607 0 0 5.3381 0 0 0 231.10236019433265 231.10236019433265 18.420919034428707 0 0 0 0 0 1.6989700043360187 1.8996498648046138 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AH{I|L}{I|L}{I|L}T 5.3381 - 1617 NaN NaN 318005.8 NaN 13044 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16385 69.933 NaN 759860 35 0 66904 0.261 + 33169 YEQSALVVSSQ 11 98 605.8030399746816 NaN 0 605.792724609375 PEAK HCD FTMS 0 0 0 16381 21076.013671875 1 0 0 4 Unmodified _YEQSALVVSSQ_ REV__ENSG00000176715|ENST00000614302|ACSF3 41.95555342248728 0.14401700297076817 1 K{I|L}{I|L}EYP 6 -1 24.914 0 0 2.0597 0 0 164.01750465463812 299.11469446353755 463.13219911817566 0 0 0 0 0 0 0 0.3054621874040891 0 K{I|L}{I|L}EYP 2.0597 - 1477 + NaN NaN 216656.4 NaN 13045 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16386 69.936 NaN 164780 35 0 21252 0.261 + 8030 GGHPPGDMWTF 11 45 601.2586781755257 1200.5028034178513 2 601.2596435546875 MULTI HCD FTMS 0 0 0 16381 69639.40625 0.5299807018009076 5 -0.13410186767578125 5 Unmodified _GGHPPGDMWTF_ REV__nc|ENSG00000229214|Q5T6M2|LINC00242 12.240655878213236 0.35042917576941135 1 KWT{M(Oxidation (M))|F} 4 -1 32.396 0 0 2.6985 0 0 620.19047743965 0 620.19047743965 0 25.406075122407685 0 0 0 0.5 0 0.5 0 KWT{M(Oxidation (M))|F} 2.6985 - 28 NaN NaN 107624.8 NaN 13046 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16387 69.94 NaN 149240 35 0 14304 0.261 + 2093 DFDQLLEAL 9 53 532.2690101731423 1062.5234674130845 2 532.2688598632812 MULTI HCD FTMS 0 0 0 16381 51776.52734375 0.21717596147468718 15 -0.391357421875 6 Unmodified _DFDQLLEAL_ ENSG00000107719|ENST00000263563|PALD1 21.536976647645854 0.1742816388551942 1 EA{I|L} 3 6 39.253 0 0 3.6943 0 0 731.3488011657479 0 731.3488011657479 0 33.767959391884546 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + EA{I|L} 3.6943 + + 91 NaN NaN 118978.8 NaN 13047 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16388 69.943 NaN 150320 35 0 12890 0.261 + 28762 TTGMLILYIFL 11 56 642.8690107281964 NaN 0 642.86865234375 PEAK HCD FTMS 0 0 0 16381 39511.58984375 0.9070066334099471 2 -0.055633544921875 7 Unmodified _TTGMLILYIFL_ ENST00000415215.1_1_X:73167175-73167235:+|nuORF 9.38312468134398 0.31550292094573573 1 {I|L}T 2 10 27.078 0 0 2.1094 0 0 390.15464980293126 676.4153442601872 1066.5699940631184 0 0 0 0 0 1.5 0 0.3494850021680094 0 {I|L}T 2.1094 - 15 NaN NaN 107172.5 NaN 13048 3338 16381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16390 69.948 NaN 3550900 35 0 357170 0.327 + 19741 NYAWVYYHL 9 99 614.7929287250602 1227.5713045169202 2 614.7929077148438 MULTI HCD FTMS 0 0 0 16389 1402655.125 0.024998225366844252 28 -0.7450332641601562 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 172.90653553480564 2.2447970467336844E-09 1 [YN]AWVYYH{I|L} 9 0 + 120.05 0 0 9.7792 9.7792 96.217 0 0 0 25.17097795568553 16.478174818886373 16.478174818886373 16.588709367037282 0 2.8494850021680094 1.6989700043360187 0 2.471848749616356 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};{[WN]|[YH]}YAVYYH{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[HT]VCYH{I|L} 9.7792;8.4278;7.7287;6.9487;5.6379;5.5974;5.5361;4.786;4.7673;4.6828 +;-;+;-;-;-;-;-;-;- + 2706 NaN NaN 575183.1 NaN 13049 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16391 69.952 NaN 456560 35 0 26295 0.261 -1 YNAPTDHGLCI 11 87 630.7877655450172 1259.5609781568344 2 630.7879638671875 MULTI HCD FTMS 0 0 0 16389 215220.296875 0.06500474105514009 27 -0.7121353149414062 2 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 1 [YN]AWMYY 7 -1 66.687 0 0 5.2945 0 0 0 265.13022791080317 265.13022791080317 42.20577288841724 0 0 0 0 2.1861818737241734 1.6989700043360187 0 0 [YN]AWMYY 5.2945 - 1467 + NaN NaN 150554.7 NaN 13050 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16392 69.956 NaN 392480 35 0 38868 0.261 + 4431 EYGKFFVTL 9 65 552.2922455325703 1102.5699381319405 2 552.29248046875 MULTI HCD FTMS 0 0 0 16389 80375.9296875 0.058903682097115384 12 -0.31018829345703125 3 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 22.736283301280096 0.1639198954644489 1 [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[{I|L}T] 9 0 + 30.569 0 0 2.7725 2.7725 87.508 0 0 0 3.6831747353331714 7.147642715192507 3.6831747353331714 26.977437731477423 0 0.4247425010840047 1.3979400086720375 0 0 + + [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[{I|L}T];[YE][KG]{M(Oxidation (M))|F}[{I|L}V][{M(Oxidation (M))|F}T];[KG][RH]{M(Oxidation (M))|F}[MN][{I|L}T] 2.7725;0.32571;0.14525 +;-;- + 293 + NaN NaN 153741.7 NaN 13051 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16393 69.959 NaN 218570 35 0 12393 0.261 + 2247 DLERVLCREG 10 66 595.3016541927266 NaN 0 595.3221435546875 PEAK HCD FTMS 0 0 0 16389 21112.599609375 0.3851947797972392 18 -0.4565887451171875 4 Unmodified _DLERVLCREG_ ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9 8.745405648335112 0.33269943387702366 1 D{I|L} 2 8 7.4743 0 0 0.62883 0 0 537.2874145768066 420.13999353580317 957.4274081126098 0 0 0 0 0 0 0 0 0 + D{I|L} 0.62883 + + 35 + NaN NaN 113682 NaN 13052 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16394 69.963 NaN 240980 35 0 25307 0.261 + -1 LQKVCGMQL 9 67 538.7846247277641 1075.5546965223282 2 538.7849731445312 MULTI HCD FTMS 0 0 0 16389 39371.40625 0.8386959716701251 1 -0.02947998046875 5 Carbamidomethyl (C) _LQKVC(Carbamidomethyl (C))GMQL_ REV__ENST00000341697.7_1_1:151117547-151117748:-|nuORF 14.838274106304384 0.23215694253501695 1 {I|L}Q{I|L} 3 -1 29.085 0 0 2.7042 0 0 703.3180496105032 0 703.3180496105032 0 15.897554856604168 0 0 0 0.28872548999643577 0 0 0 {I|L}Q{I|L} 2.7042 - 32 NaN NaN 116902.5 NaN 13053 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16395 69.966 NaN 151430 35 0 12815 0.261 + 5603 FLSCPAHTLFV 11 52 617.816990266503 1233.619427599806 2 617.8159790039062 MULTI HCD FTMS 0 0 0 16389 26757.46484375 0.47262339960565447 2 -0.0590057373046875 6 Unmodified _FLSCPAHTLFV_ ENSG00000159307|ENST00000360835|SCUBE1 5.731851221503515 0.39378271418728467 1 VV{M(Oxidation (M))|F} 3 10 29.693 0 0 2.407 0 0 870.4034901349625 0 870.4034901349625 0 24.20818753952375 0 0 0 0.5 0 0 0 VV{M(Oxidation (M))|F} 2.407 - 18 NaN NaN 105798.1 NaN 13054 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16396 69.969 NaN 133510 35 0 12518 0.262 -1 LPMPTEPLL 9 46 513.7801051989912 1025.5456574647824 2 513.7804565429688 MULTI HCD FTMS 0 0 0 16389 9372.373046875 0.10171051703433455 5 -0.134002685546875 7 Oxidation (M) _LPM(Oxidation (M))PTEPLL_ ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 12.531546534597751 0.2520865569484384 1 {I|L}[DP]{I|L}NG{I|L} 7 -1 40.578 0 0 3.9567 0 0 285.1329823224625 0 285.1329823224625 0 25.093275985023382 0 0 0 0.7742275032520141 0 0.3494850021680094 0 {I|L}[DP]{I|L}NG{I|L} 3.9567 - 126 NaN NaN 103715.5 NaN 13055 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16397 69.973 NaN 60405 35 0 5325.9 0.261 + 2791 DYGNGFGGF 9 44 467.18960053108646 NaN 0 467.1897277832031 PEAK HCD FTMS 0 0 0 16389 17895.193359375 0.7375549452871524 1 -0.02947998046875 8 Unmodified _DYGNGFGGF_ ENSG00000177733|ENST00000314940|HNRNPA0 19.256988751693697 0.19238547928067054 1 N 1 8 11.99 0 0 1.2859 0 0 653.2425910994792 162.05599390201408 815.2985850014933 0 0 0 0 0 0.5 0 0 0 + N 1.2859 + + 3 + NaN NaN 88084 NaN 13056 3339 16389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16399 69.977 NaN 2141600 35 0 466580 0.327 + 8792 HIKIVDPFF 9 100 558.3167114023549 NaN 0 558.2979125976562 PEAK HCD FTMS 0 0 0 16398 29112.236328125 0.9710996596664108 1 -0.0295257568359375 1 Unmodified _HIKIVDPFF_ REV__nc|ENSG00000289746|P0CF51|TRGC1 18.13498045792455 0.19991664011725976 1 {M(Oxidation (M))|F}P{I|L}SR 5 -1 34.821 0 0 3.124 0 0 165.11642806438857 346.1407564752563 511.25718453964487 0 0 0 0 0 0 0 1.0356668758921828 0 {M(Oxidation (M))|F}P{I|L}SR 3.124 - 899 + NaN NaN 407646.7 NaN 13057 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16400 69.982 NaN 483110 35 0 66094 0.261 + 31815 VYMDWYEKF 9 76 640.7862258131424 1279.5578986930848 2 640.7864990234375 MULTI HCD FTMS 0 0 0 16398 284626.5 0.25873237032826907 6 -0.15334320068359375 2 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 78.06048673739656 0.006479972202176041 1 VYMDWYEK{M(Oxidation (M))|F} 9 0 + 103.62 0 0 8.0985 8.0985 93.439 0 0 0 77.42660950345218 9.137342758552691 9.137342758552691 13.169015600442577 0 2.9489700043360187 1.6989700043360187 0.7302046884880937 0 + + VYMDWYEK{M(Oxidation (M))|F};[YV]MDWYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWDMP{M(Oxidation (M))|F};[YV]MDW{[SA]|[TG]}[YV]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}[YG]MP{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}W[YV]{M(Oxidation (M))|F} 8.0985;7.0693;5.2606;4.1925;2.3797;0.48056 +;+;-;-;-;- + 548 + NaN NaN 151929.2 NaN 13058 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16401 69.985 NaN 321760 35 0 45517 0.264 -1 LEVPDMNI 8 54 473.73104613587077 945.4475393385416 2 473.7310791015625 MULTI HCD FTMS 0 0 0 16398 176485.71875 0.5543386645305364 -9 0.2557220458984375 3 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 20.453626601364224 0.4433031943603284 1 {I|L}N{I|L} 3 -1 34.253 0 0 3.6229 0 0 587.2262777888263 0 587.2262777888263 0 19.648415687162952 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {I|L}N{I|L} 3.6229 - 27 NaN NaN 131254.2 NaN 13059 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16402 69.989 NaN 229340 35 0 24019 0.261 + 18230 MPDVDFNL 8 56 483.7158656783491 965.4171784234982 2 483.716064453125 MULTI HCD FTMS 0 0 0 16398 107316.9140625 0.5419699735102159 -8 0.23282623291015625 4 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 42.09456458481378 0.20402248593209013 1 D{M(Oxidation (M))|F}N{I|L} 4 4 43.29 0 0 4.484 0 0 458.18440444160314 0 458.18440444160314 0 21.730530548736056 0 0 0 0.805462187404089 0 0.3054621874040891 0.3252574989159953 + D{M(Oxidation (M))|F}N{I|L} 4.484 + + 126 NaN NaN 110024.1 NaN 13060 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16403 69.992 NaN 232030 35 0 16147 0.261 + 19714 NYAPAFTML 9 62 522.2461597613791 1042.477766589558 2 522.2464599609375 MULTI HCD FTMS 0 0 0 16398 51323.9375 0.3897599511698321 -12 0.34766387939453125 5 Oxidation (M) _NYAPAFTM(Oxidation (M))L_ ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF 43.85829265575387 0.04763305254408404 1 [YN]{[WT]|[RM]}VT{M(Oxidation (M))|F}{I|L} 8 4 + 31.652 0 0 3.0362 3.0362 80.055 0 0 0 7.628173600180244 1.0266614305566222 1.0266614305566222 2.130820732553623 0 1.0317183090963749 1.2218487496163564 0.3252574989159953 0 [YN]{[WT]|[RM]}VT{M(Oxidation (M))|F}{I|L};[YN]A{[ES]|[DT]|[{I|L}C]}V[DV]{M(Oxidation (M))|F};[YN]{[WT]|[RM]}V[DV]{M(Oxidation (M))|F} 3.0362;2.8318;2.2606 -;-;- 97 NaN NaN 129008.5 NaN 13061 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16404 69.995 NaN 236840 35 0 19464 0.261 + 5081 FEEEVPRIFK 10 49 647.3479049222844 NaN 0 647.7743530273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FEEEVPRIFK_ ENSG00000080986|ENST00000261597|NDC80 3.2813086475875832 0.33737594360511275 1 E 1 9 4.6041 0 0 0.35617 0 0 887.5288654092188 273.0876864068969 1160.6165518161158 0 0 0 0 0 0 0 0 0 + E 0.35617 + + 7 + NaN NaN 128589 NaN 13062 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16405 69.999 NaN 140150 35 0 11962 0.263 + 26768 SYGDILHVI 9 60 508.77408775248415 1015.5336225717683 2 508.77398681640625 MULTI HCD FTMS 0 0 0 16398 19409.751953125 0.02337902710130311 22 -0.5680084228515625 7 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 18.13498045792455 0.20367413111508956 1 [Y{I|L}]DR{[QV]|[N{I|L}]|[RA]|[KV]}E 7 6 9.0014 0 0 0.88637 0 0 0 109.06478647241207 109.06478647241207 1.5541040459422106 0 0 0 0 0 0 0.3807196863200844 0 [Y{I|L}]DR{[QV]|[N{I|L}]|[RA]|[KV]}E 0.88637 - 41 NaN NaN 102935.4 NaN 13063 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16406 70.002 NaN 61303 35 0 4518.9 0.261 + 16901 LYFPETSH 8 39 497.23781068005337 NaN 0 497.2380676269531 PEAK HCD FTMS 0 0 0 16398 20712.990234375 0.4904023110808748 2 -0.055633544921875 8 Unmodified _LYFPETSH_ ENST00000264992.7_1_3:130745437-130745518:-|nuORF 2.577480529830294 0.38822285293237185 1 T 1 7 6.9897 0 0 0.70428 0 0 130.07405778413175 758.3133028619749 888.3873606461066 0 0 0 0 0 0 0 0 0 + T 0.70428 + + 3 + NaN NaN 100888.2 NaN 13064 3340 16398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16408 70.007 NaN 1378000 35 0 579190 0.327 + 7997 GFLELLVEYF 10 48 410.55343159526205 1228.6384653859861 3 410.5536193847656 MULTI HCD FTMS 0 0 0 16407 319881.1875 0.4584558613093042 3 -0.0749969482421875 1 Unmodified _GFLELLVEYF_ ENSG00000049618|ENST00000636930|ARID1B;nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B 9.5439744041441 0.42184090036563754 1 Y{M(Oxidation (M))|F} 2 8 30.969 0 0 2.5206 0 0 900.4959564442344 0 900.4959564442344 0 18.494850021680094 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F} 2.5206 + + 16 + NaN NaN 286772.4 NaN 13065 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16409 70.011 NaN 789760 35 0 49644 0.261 + 34909 YSIKSEEGKSD 11 107 621.7967992814879 1241.5790456297757 2 621.7821655273438 MULTI HCD FTMS 0 0 0 16407 69382.03125 0.8071700704039095 -2 0.0590057373046875 2 Unmodified _YSIKSEEGKSD_ REV__ENSG00000100364|ENST00000336156|KIAA0930;REV__nc|ENSG00000100364|Q6ICG6-2|KIAA0930;REV__nc|ENSG00000100364|Q6ICG6-3|KIAA0930 21.536976647645854 0.2694300281126922 1 [YN]AWVEMP{M(Oxidation (M))|F} 9 -1 63.889 0 0 5.1458 0 0 0 101.0640482896853 101.0640482896853 31.91381491372436 0 0 0 0 0 2 0.3494850021680094 1.506625672816984 [YN]AWVEMP{M(Oxidation (M))|F} 5.1458 - 6761 NaN NaN 204275.5 NaN 13066 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16410 70.015 NaN 505490 35 0 125480 0.261 + 7799 FYPPKVELF 9 59 570.3105901170402 1138.6066273008803 2 570.3108520507812 MULTI HCD FTMS 0 0 0 16407 197579.53125 0.13716208470827085 12 -0.3061981201171875 3 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 22.736283301280096 0.1639198954644489 1 [Y{M(Oxidation (M))|F}]P{[QV]|[N{I|L}]|[RA]|[KV]}[EP]{I|L}{M(Oxidation (M))|F} 9 2 + 22.342 0 0 1.9622 1.9622 86.856 0 0 0 1.9357497244931245 8.846974825220716 1.9357497244931245 22.34182484690081 0 1 0 0 0 [Y{M(Oxidation (M))|F}]P{[QV]|[N{I|L}]|[RA]|[KV]}[EP]{I|L}{M(Oxidation (M))|F} 1.9622 - 41 NaN NaN 155166.5 NaN 13067 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16411 70.018 NaN 261090 35 0 24533 0.262 -1 LACALEVVM 9 54 482.7451744359102 963.4757959386204 2 482.7452392578125 MULTI HCD FTMS 0 0 0 16407 56390.25390625 0.39943733640282675 -8 0.2261962890625 4 Oxidation (M) _LACALEVVM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.30548876998284 0.10066689432505688 1 N[QP]EVV{M(Oxidation (M))|F} 7 -1 52.836 0 0 5.4838 0 0 132.0984288505329 0 132.0984288505329 0 31.893426046896494 0 0 0 1.305462187404089 0 0.3054621874040891 0.3494850021680094 N[QP]EVV{M(Oxidation (M))|F} 5.4838 - 194 + NaN NaN 120785.7 NaN 13068 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16412 70.021 NaN 268720 35 0 42482 0.261 + 30060 VFSTVVIHF 9 58 524.7950064029178 1047.5754598726355 2 524.7948608398438 MULTI HCD FTMS 0 0 0 16407 83059.28125 0.16439193347373368 7 -0.17949676513671875 5 Unmodified _VFSTVVIHF_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 97.07464715276575 0.004340583992084827 1 ESTVV{I|L}H{M(Oxidation (M))|F} 8 2 64.928 0 0 6.1979 0 0 117.07956251111052 0 117.07956251111052 0 43.67336295911841 0 0 0 2.254432191740108 0 0.4247425010840047 0 ESTVV{I|L}H{M(Oxidation (M))|F} 6.1979 - 167 + NaN NaN 126637.1 NaN 13069 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16413 70.025 NaN 244820 35 0 14110 0.261 + 7683 FYLEGGFSKF 10 70 597.7946737905037 1193.5747946478073 2 597.7959594726562 MULTI HCD FTMS 0 0 0 16407 40108.17578125 0.3345587931020438 29 -0.7711029052734375 6 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 33.4449034751529 0.20229115034201947 1 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 34.548 0 0 2.8945 2.8945 84.546 0 0 0 5.6424927368726046 19.85531242661758 5.6424927368726046 9.208187539523756 0 1.4247425010840047 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}E{[MS]|[{M(Oxidation (M))|F}A]}[YK]N 2.8945;2.123;1.034 -;+;- + 164 NaN NaN 131895.9 NaN 13070 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16414 70.028 NaN 122000 35 0 16381 0.261 + -1 ESVCLVMDTF 10 42 601.2586781755257 1200.5028034178513 2 601.2575073242188 MULTI HCD FTMS 0 0 0 16407 42614.25 0.32430963068010543 8 -0.20221710205078125 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ESVCLVM(Oxidation (M))DTF_ REV__ENST00000263207.7_1_22:19958033-19958066:-|nuORF 13.90604991867851 0.3810395177745597 1 T{M(Oxidation (M))|F} 2 -1 26.198 0 0 2.1822 0 0 934.3731354047176 0 934.3731354047176 0 19.20818753952375 0 0 0 0.5 0 0.5 0 T{M(Oxidation (M))|F} 2.1822 + + 12 NaN NaN 116078.1 NaN 13071 3341 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16416 70.033 NaN 751170 35 0 59636 0.327 + 2758 DYAIWNTKF 9 88 579.2838073673369 1156.5530618014736 2 579.7973022460938 MULTI HCD FTMS 0 0 0 16415 10771.7119140625 0.23056395295072984 2 -0.04888916015625 1 Unmodified _DYAIWNTKF_ ENSG00000181544|ENST00000650831|FANCB;FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant 29.081581746732265 0.1154664336125038 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVHH{M(Oxidation (M))|F} 9 5 + 57.898 0 0 5.0061 5.0061 81.744 0 0 0 10.53359931257134 24.437427288190676 10.53359931257134 0.7525749891599531 0 0.4247425010840047 1.6989700043360187 0 0.3807196863200844 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVHH{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}HH;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}ARV{[C(Carbamidomethyl (C))G]|[NC]}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}N[C(Carbamidomethyl (C))R]G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}N{[MG]|[TS]}QG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGVHH{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}AR{[MG]|[TS]}QG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}RV{[C(Carbamidomethyl (C))G]|[NC]}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}HH;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}A[VG]VHH{M(Oxidation (M))|F} 5.0061;4.941;4.4486;4.2064;4.0405;3.8807;3.6489;3.6235;3.5134;3.4891 -;-;-;-;-;-;-;-;-;- 1816 NaN NaN 218328.4 NaN 13072 3342 16415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16417 70.037 NaN 630930 35 0 178870 0.261 -1 FPANVMDVI 9 62 511.25409607697145 1020.4936392207429 2 511.2548522949219 MULTI HCD FTMS 0 0 0 16415 406809.96875 0.7267911118555118 -10 0.28845977783203125 2 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 18.1463463914782 0.20357593197100715 1 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 -1 + 54.442 0 0 5.3349 5.3349 91.676 0 0 0 13.679767852945943 36.1709124234504 13.679767852945943 50.877822384861624 0 0.4247425010840047 1.3010299956639813 0.3054621874040891 0.3494850021680094 [DV][WK]{M(Oxidation (M))|F}DV{I|L};[DV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}{I|L}[QA] 5.3349;0.34927 -;- 215 NaN NaN 177268.4 NaN 13073 3342 16415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16418 70.041 NaN 430930 35 0 94850 0.261 + 7800 FYPPKVELF 9 51 570.3105901170402 1138.6066273008803 2 570.3107299804688 MULTI HCD FTMS 0 0 0 16415 167038.109375 0.11595986265709475 13 -0.3324127197265625 3 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 29.081581746732265 0.1154664336125038 1 {I|L}E{I|L}{M(Oxidation (M))|F} 4 6 26.688 0 0 2.3439 0 0 618.3431263654312 0 618.3431263654312 0 18.615553462000562 0 0 0 0.8807196863200843 0 0 0 {I|L}E{I|L}{M(Oxidation (M))|F} 2.3439 - 54 NaN NaN 168428.2 NaN 13074 3342 16415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16419 70.044 NaN 180820 35 0 19055 0.261 -1 SYMFVDENTF 10 56 634.7603224134787 1267.5060918937572 2 635.2611694335938 MULTI HCD FTMS 0 0 0 16415 37458.65625 0.3454654199757172 8 -0.1988525390625 4 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 7.608950283845883 0.4350283211712914 1 T[{I|L}A]DE{[QS]|[NT]}{M(Oxidation (M))|F} 8 -1 22.88 0 0 1.8051 0 0 358.1114979474625 0 358.1114979474625 0 6.338031200885155 0 0 0 0.3494850021680094 0 0 0 T[{I|L}A]DE{[QS]|[NT]}{M(Oxidation (M))|F} 1.8051 - 71 NaN NaN 114176.2 NaN 13075 3342 16415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16420 70.048 NaN 129710 35 0 10569 0.261 + 5624 FMATVYAVNAF 11 57 617.3031533942535 NaN 0 617.317626953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FMATVYAVNAF_ REV__SLC7A8|p.S292F|1|0.13|ENSG00000092068|chr14:23139461-23139461|G/A|missense_variant 7.101721422024254 0.3219746049828039 1 A 1 -1 6.9897 0 0 0.56707 0 0 884.4495798126094 274.08339224912635 1158.5329720617358 0 0 0 0 0 0 0 0 0 A 0.56707 + + 47 + NaN NaN 110246 NaN 13076 3342 16415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16421 70.051 NaN 70177 35 0 4811 0.262 -1 MAIASLFCP 9 48 497.7394714355469 NaN 0 497.7394714355469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MAIASLFCP_ ENST00000504087.5_1_4:125599853-125599892:-|nuORF 4.75600775471527 0.27219989241163056 1 ND 2 -1 6.4537 0 0 0.64961 0 0 131.0629710919938 630.3217867486936 761.3847578406874 0 0 0 0 0 0 0 0 0 ND 0.64961 - 12 + NaN NaN 87747.3 NaN 13077 3342 16415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16423 70.056 NaN 1373400 35 0 246170 0.327 + 16928 LYGRLLVTF 9 96 541.3238242159241 1080.6330954986481 2 541.3240966796875 MULTI HCD FTMS 0 0 0 16422 970424.25 1 0 0 1 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 126.56589448801843 0.0008132384440316759 1 {I|L}YGR{I|L}{I|L}VT{M(Oxidation (M))|F} 9 0 + 111.51 0 0 10.319 10.319 96.841 0 0 0 65.7747579965705 16.478174818886373 16.478174818886373 18.34097062732033 0 3.079689690656103 1.6989700043360187 1.6892404878284264 0 + + {I|L}YGR{I|L}{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}VT{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}S{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]GR{I|L}T{I|L}V{M(Oxidation (M))|F} 10.319;8.6219;8.0003;7.8806;7.8151;7.2138;7.0738;6.9249;6.9109;6.8908 +;+;-;-;-;-;-;-;-;- + 3640 + NaN NaN 304320.9 NaN 13078 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16424 70.06 NaN 1086800 35 0 281930 0.261 + 24429 RYLDEINLL 9 106 574.8189054301534 1147.6232579271068 2 574.819580078125 MULTI HCD FTMS 0 0 0 16422 504679.34375 0.03293156809880371 20 -0.5124053955078125 2 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 69.33821966488729 0.009302356455414924 1 DE{I|L}N{I|L}{I|L} 6 3 68.114 0 0 5.9352 0 0 432.2466297834 0 432.2466297834 0 40.621993086288214 0 0 0 1.9258337024346173 0 0.3807196863200844 0.23965182871044374 + DE{I|L}N{I|L}{I|L} 5.9352 + + 2415 NaN NaN 269686.1 NaN 13079 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16425 70.064 NaN 304470 35 0 47580 0.262 -1 MPDLPNVGL 9 54 486.24694600107915 970.4793390689583 2 486.2467956542969 MULTI HCD FTMS 0 0 0 16422 142754.640625 0.9967026752349474 5 -0.13055419921875 3 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 18.1463463914782 0.20357593197100715 1 VG{I|L} 3 -1 35.445 0 0 3.6524 0 0 683.2947451484558 0 683.2947451484558 0 31.46591250700361 0 0 0 0.9247425010840047 0 0 0 VG{I|L} 3.6524 + + 59 NaN NaN 152726.4 NaN 13080 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16426 70.067 NaN 163300 35 0 11235 0.261 + 32694 WPLKDLTL 8 57 493.28945192840405 984.5643509236081 2 493.28887939453125 MULTI HCD FTMS 0 0 0 16422 80968.875 0.9079158859805179 5 -0.13055419921875 4 Unmodified _WPLKDLTL_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-6|ALS2CL 18.1463463914782 0.46027927471454505 1 WP{I|L} 3 5 31.198 0 0 3.1687 0 0 0 585.3240297103125 585.3240297103125 17.998037644757048 0 0 0 0 0.5 0 0 0 + WP{I|L} 3.1687 + + 23 + NaN NaN 106698.8 NaN 13081 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16427 70.07 NaN 164980 35 0 8560.5 0.261 + 14584 LFLFVDRTW 9 70 598.8268217367107 1195.6390905402213 2 598.826416015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LFLFVDRTW_ REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF 21.536976647645854 0.1742816388551942 1 {I|L}{M(Oxidation (M))|F}{I|L} 3 -1 22.703 0 0 1.8988 0 0 0 819.3821505182249 819.3821505182249 3.8515187806019213 0 0 0 0 0.3494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L} 1.8988 + + 54 + NaN NaN 110840.6 NaN 13082 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16428 70.074 NaN 127480 35 0 11008 0.261 -1 KCNECSRTF 9 42 601.2586781755257 1200.5028034178513 2 601.7064208984375 MULTI HCD FTMS 0 0 0 16422 42573.41796875 0.5579118704829737 10 -0.25725555419921875 6 2 Carbamidomethyl (C) _KC(Carbamidomethyl (C))NEC(Carbamidomethyl (C))SRTF_ ENSG00000213799|ENST00000458035|ZNF845 10.073929032068715 0.27331982688540024 1 T{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.3289 0 0 934.3764563886903 0 934.3764563886903 0 22.47425010840047 0 0 0 0.5 0 0.5 0 T{M(Oxidation (M))|F} 2.3289 + + 5 NaN NaN 99483.4 NaN 13083 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16429 70.077 NaN 82523 35 0 5088.1 0.262 + -1 FLHRPAPF 8 44 513.7783813476562 NaN 0 513.7783813476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FLHRPAPF_ REV__ENST00000371626.8_1_1:52520697-52520838:-|nuORF 5.760428011301431 0.38822285293237185 1 {I|L}Y 2 -1 10.886 0 0 1.0614 0 0 302.16073114308364 444.2001131647094 746.3608443077931 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L}Y 1.0614 - 14 + NaN NaN 92453.7 NaN 13084 3343 16422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16431 70.082 NaN 1057200 35 0 70597 0.327 + 7762 FYNLLTRTF 9 89 587.8165257685989 1173.6184986039978 2 587.8170776367188 MULTI HCD FTMS 0 0 0 16430 419390.9375 0.6205494492994762 4 -0.10449981689453125 1 Unmodified _FYNLLTRTF_ ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT 136.39213081522345 0.00021731600835925866 1 [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 9 0 [Y{M(Oxidation (M))|F}] + + 96.433 14.693 4.7376 8.2167 8.2167 67.158 0 0 0 0 72.90053838045935 0 0 0 3.004432191740108 0 1.7416440611282624 0 + + [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 8.2167 + + 1877 + NaN NaN 245091.2 NaN 13085 3344 16430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16432 70.086 NaN 1059100 35 0 84670 0.261 + 4525 EYLDSGWNLN 10 101 605.7724103607663 NaN 0 605.7921142578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _EYLDSGWNLN_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 14.838274106304384 0.3224471714378502 1 K{I|L}{I|L}EYP 6 9 25.508 0 0 2.1089 0 0 163.94660187212008 299.11445032291255 463.06105219503263 0 0 0 0 0 0 0 0.3252574989159953 0 K{I|L}{I|L}EYP 2.1089 - 1366 + NaN NaN 247449.6 NaN 13086 3344 16430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16433 70.09 NaN 136650 35 0 10579 0.261 -1 0 56 629.3141624911208 628.3068860245207 1 629.314697265625 MULTI HCD FTMS 0 0 0 16430 241711.28125 0.7028020452126026 -1 0.02605438232421875 3 NaN NaN 1 [YN]AP 4 -1 20.177 0 0 3.2114 0 0 0 180.09061340172698 180.09061340172698 13.187587626244124 0 0 0 0 0 1.3979400086720375 0 0 [YN]AP 3.2114 - 32 NaN NaN 105358.6 NaN 13087 3344 16430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16434 70.093 NaN 325010 35 0 23715 0.261 + 33673 YKILMNFFD 9 82 595.8004831033959 1189.5864132735917 2 597.3194580078125 MULTI HCD FTMS 0 0 0 16430 13498.0439453125 0.37119102124656833 -7 0.1896514892578125 4 Unmodified _YKILMNFFD_ REV__ENSG00000160360|ENST00000440944|GPSM1;REV__nc|ENSG00000160360|Q86YR5-2|GPSM1;REV__nc|ENSG00000160360|Q86YR5-4|GPSM1;REV__nc|ENSG00000160360|Q86YR5|GPSM1 7.289230182591677 0.29575926068275815 1 W 1 -1 14.604 0 0 1.2277 0 0 985.4959114198792 0 985.4959114198792 0 4.146518864155125 0 0 0 0 0 0 0 W 1.2277 - 155 + NaN NaN 132056.2 NaN 13088 3344 16430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16435 70.096 NaN 149390 35 0 7397.6 0.261 + -1 NLMSADRRFE 10 59 627.8008561936533 NaN 0 627.80224609375 PEAK HCD FTMS 0 0 0 16430 45106.33984375 0.692919593055768 -5 0.134002685546875 5 Oxidation (M) _NLM(Oxidation (M))SADRRFE_ REV__ENSG00000131653|ENST00000326181|TRAF7;REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 5.296884461304476 0.3356508900602619 1 PE 2 -1 14.821 0 0 1.1823 0 0 148.07094452955158 876.4038179986936 1024.4747625282453 0 0 0 0 0 0.5 0 0.4247425010840047 0 PE 1.1823 - 64 + NaN NaN 108779.8 NaN 13089 3344 16430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16437 70.101 NaN 3591900 35 0 604310 0.327 + 19742 NYAWVYYHL 9 95 614.7929287250602 1227.5713045169202 2 614.79248046875 MULTI HCD FTMS 0 0 0 16436 1434516.125 0.025566054510457174 34 -0.9189300537109375 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 1 [YN]AWVYYH{I|L} 9 0 + 120.29 0 0 9.7989 9.7989 96.482 0 0 0 29.392653074926045 16.478174818886373 16.478174818886373 18.349621957594096 0 2.774227503252014 1.6989700043360187 0 2.5713337517843655 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYAWVY{[QV]|[N{I|L}]|[RA]|[KV]}W;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[WN]|[YH]}YAVYYH{I|L};[YN]WAVW[YN]{I|L};NYA[{M(Oxidation (M))|F}V]VW[SG]W;{[QD]|[EN]|[WG]|[KD]|[RS]}GYAVYYH{I|L} 9.7989;8.3041;7.4045;6.9233;6.7619;5.5687;5.5142;5.4285;5.2517;5.1127 +;-;+;-;-;-;-;-;-;- + 2882 NaN NaN 558885.8 NaN 13090 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16438 70.106 NaN 1888200 35 0 198750 0.261 + 29417 TYTDRVFFL 9 112 581.3005047013379 1160.5864564694757 2 581.301025390625 MULTI HCD FTMS 0 0 0 16436 745461.25 0.14834354529255395 -7 0.17955780029296875 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 110.5527297667825 0.0028521687250969148 1 TYTDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 2 + 102.53 0 0 8.8347 8.8347 88.532 0 0 0 1.3919815197522212 1.3919815197522212 1.3919815197522212 1.3919815197522212 0 2.642159058960253 1.6989700043360187 0.6549471895720984 0 TYTDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}V;{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}RV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}[HD]D[VG]V{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][{I|L}A]YRD{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}R{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KS][NG]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.8347;8.7147;7.4371;6.3749;5.3062;5.2495;4.8465;3.9768;3.9719;3.8308 -;+;-;-;-;-;-;-;-;- + 4482 + NaN NaN 377227.2 NaN 13091 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16439 70.109 NaN 1740700 35 0 446890 0.261 + 24580 RYLPDTLLL 9 90 552.3265013397413 1102.6384497462825 2 552.3268432617188 MULTI HCD FTMS 0 0 0 16436 419520.25 0.046100351279808154 -7 0.17955780029296875 3 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 60.07390631473393 0.0174780869009295 1 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L} 9 2 + 69.006 0 0 6.2583 6.2583 90.181 0 0 0 13.010299956639813 16.478174818886373 13.010299956639813 13.010299956639813 0 1.6861818737241734 1.154901959985743 1.1237125054200234 0.3494850021680094 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L};[YR]{I|L}[DP]T{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ[KG]T{I|L}{I|L}{I|L} 6.2583;5.0784;4.7088 -;+;- + 560 NaN NaN 364057.2 NaN 13092 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16440 70.113 NaN 804670 35 0 60977 0.261 + 32184 VYTDFAFRI 9 102 566.2955249358419 1130.5764969384836 2 566.2957153320312 MULTI HCD FTMS 0 0 0 16436 212242.609375 0.291194901922382 -4 0.09439849853515625 4 Unmodified _VYTDFAFRI_ ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF 110.6747026088012 0.0028322563155251486 1 [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L} 9 0 + 98.545 0 0 8.7164 8.7164 93.74 0 0 0 16.641974908773918 76.86288400327398 16.641974908773918 10.656505091918035 0 2.9247425010840047 1.6989700043360187 1.6936726795685342 0 + + [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]TD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};[YV]TD{M(Oxidation (M))|F}AR{I|L}{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}A{M(Oxidation (M))|F}R{I|L};[YT]VD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}AR{M(Oxidation (M))|F}{I|L};[YT]VD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}AR{I|L}{M(Oxidation (M))|F};[YT]VD{M(Oxidation (M))|F}AR{I|L}{M(Oxidation (M))|F} 8.7164;7.7738;6.5993;6.3263;6.0831;5.3838;5.1405;4.6706;4.2093;3.9661 +;-;-;-;-;-;-;-;-;- + 2528 NaN NaN 198831.8 NaN 13093 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16441 70.116 NaN 692060 35 0 69823 0.261 + 4451 EYIHALTLL 9 66 536.8055404551002 1071.5965279770003 2 536.8056030273438 MULTI HCD FTMS 0 0 0 16436 117929.6640625 0.33566776840729473 -3 0.06829071044921875 5 Unmodified _EYIHALTLL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF 48.345845343767074 0.03388484103555672 1 QT{I|L}{I|L} 4 6 41.402 0 0 3.8636 0 0 598.3228683217276 0 598.3228683217276 0 6.946051989335693 0 0 0 0.8494850021680094 0 1 0 QT{I|L}{I|L} 3.8636 - 167 NaN NaN 207023.1 NaN 13094 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16442 70.119 NaN 465830 35 0 46935 0.261 + 16854 LYENCFHIL 9 76 576.2813575183771 1150.5481621035542 2 576.28173828125 MULTI HCD FTMS 0 0 0 16436 100094.5859375 0.7445477961755249 1 -0.0294189453125 6 Unmodified _LYENCFHIL_ ENSG00000124571|ENST00000265351|XPO5 92.65332237495696 0.004456439685314431 1 {I|L}YENC{M(Oxidation (M))|F}H{I|L}{I|L} 9 0 + 98.708 0 0 8.5792 8.5792 94.742 0 0 0 88.53056470622741 8.256886463274284 8.256886463274284 15.59029246116819 0 2.31295299324845 2 0.7134679910804405 0.6382104921644451 + + {I|L}YENC{M(Oxidation (M))|F}H{I|L}{I|L};{I|L}YEGGC{M(Oxidation (M))|F}H{I|L}{I|L};{I|L}YE{[{M(Oxidation (M))|F}C]|[YS]}NH{I|L}{I|L};{I|L}YE{[{M(Oxidation (M))|F}C]|[YS]}HN{I|L}{I|L};[Y{I|L}]ENC{M(Oxidation (M))|F}H{I|L}{I|L};{I|L}YE{[{M(Oxidation (M))|F}C]|[YS]}GGH{I|L}{I|L};{I|L}YE{[{M(Oxidation (M))|F}C]|[YS]}HGG{I|L}{I|L} 8.5792;7.2242;6.5803;6.0677;5.7705;5.2253;4.7127 +;-;-;-;+;-;- + 430 + NaN NaN 165240 NaN 13095 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16443 70.123 NaN 278990 35 0 22204 0.261 + 7911 FYYIMPPLF 9 76 595.8004831033959 1189.5864132735917 2 597.3191528320312 MULTI HCD FTMS 0 0 0 16436 33397.6015625 0.9184212083911211 -6 0.15340423583984375 7 Unmodified _FYYIMPPLF_ OR14C36|p.S277Y|1|0.22|ENSG00000177174|chr1:248349604-248349604|C/A|missense_variant 9.347437153973935 0.2795965555214564 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5 5 18.442 0 0 1.5503 0 0 489.2718678205094 0 489.2718678205094 0 3.8380312008851547 0 0 0 0.25 0 0 0 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.5503 - 308 NaN NaN 126838.3 NaN 13096 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16444 70.126 NaN 291610 35 0 20836 0.261 + 17598 LYWRSLATL 9 81 561.8189609741303 1121.6233690150605 2 561.8187866210938 MULTI HCD FTMS 0 0 0 16436 39018.6875 0.02593857877633364 22 -0.5916290283203125 8 Unmodified _LYWRSLATL_ REV__ENSG00000198133|ENST00000554480|TMEM229B 20.453626601364224 0.18364154288633264 1 [Y{I|L}]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TVT{I|L} 9 -1 + 53.852 0 0 4.8013 4.8013 81.835 0 0 0 8.942796525820853 9.84539173108979 8.942796525820853 1.7339374311232802 0 0.5 1.5228787452803376 0.7302046884880937 0 [Y{I|L}]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TVT{I|L};[Y{I|L}]N{M(Oxidation (M))|F}[RP]VT{I|L};[Y{I|L}]GG{M(Oxidation (M))|F}[RP]VT{I|L};[Y{I|L}]{I|L}[WR]{[SA]|[TG]}T{I|L} 4.8013;4.6467;3.8257;3.6663 -;-;-;- 350 NaN NaN 126988 NaN 13097 3345 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16446 70.131 NaN 2319700 35 0 543300 0.327 + 27449 SYVRSLPFF 9 108 558.2988451643577 1114.5831373955152 2 558.298095703125 MULTI HCD FTMS 0 0 0 16445 1199104.875 0.6628957288910673 3 -0.078399658203125 1 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 93.16586880292088 0.00444300900000894 1 {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 83.638 0 0 7.504 7.504 88.749 0 0 0 4.137342758552691 58.36742101142519 4.137342758552691 6.518637558036673 0 3.079689690656103 0 1.1237125054200234 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]SRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YK]G{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};Q[{I|L}A]P{I|L}SRSP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YV]{I|L}SRSP{M(Oxidation (M))|F};{I|L}{[HG]|PP}[TP]S{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};Q[PS]P{I|L}SRV[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YK]G{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YV]SRS{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 7.504;6.9191;6.5534;6.3814;6.0512;5.3577;5.1665;5.1054;5.1006;5.0355 +;-;-;-;-;-;-;-;-;- + 2498 NaN NaN 439835.8 NaN 13098 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16447 70.135 NaN 681650 35 0 50196 0.261 + 16844 LYEHNFAFF 9 88 594.2808681720345 1186.547183410869 2 594.2684326171875 MULTI HCD FTMS 0 0 0 16445 109101.8125 0.37863140987752597 -3 0.0748748779296875 2 Unmodified _LYEHNFAFF_ ENSG00000060642|ENST00000674202|PIGV 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F} 9 7 + 32.641 0 0 2.7509 2.7509 81.506 0 0 0 1.4663648028671652 8.294446370893034 1.4663648028671652 5.687036221786705 0 0.4247425010840047 0 1.4802046884880937 0 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[YQ][QA]WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D[RN]T{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{[QS]|[NT]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]{M(Oxidation (M))|F}{[WT]|[RM]};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]{M(Oxidation (M))|F}G{[ET]|[MV]};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}[EP]P{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[YQ][QA]{M(Oxidation (M))|F}{[WT]|[RM]};[{M(Oxidation (M))|F}T]W{[WN]|[YH]}{[CA]|SS}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}{[WN]|[YH]}{[CA]|SS}{I|L}{M(Oxidation (M))|F} 2.7509;2.2716;2.1392;1.6825;1.5153;1.4767;1.4657;1.036;1.0123;1.0123 -;-;-;-;-;-;-;-;-;- 890 + NaN NaN 182688.7 NaN 13099 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16448 70.139 NaN 320430 35 0 36484 0.261 + 31816 VYMDWYEKF 9 64 640.7862258131424 1279.5578986930848 2 640.78662109375 MULTI HCD FTMS 0 0 0 16445 162043.046875 0.14730104755946324 12 -0.30323028564453125 3 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 65.47368725323818 0.010552856507075443 1 [YV]MDWYEK{M(Oxidation (M))|F} 9 0 + 82.094 0 0 6.4158 6.4158 84.505 0 0 0 1.5237220041214528 1.5237220041214528 1.5237220041214528 1.5237220041214528 0 2.3494850021680094 1.6989700043360187 0.3807196863200844 0 + + [YV]MDWYEK{M(Oxidation (M))|F};VYMDWYEK{M(Oxidation (M))|F};[YV]MDWYQ[Y{I|L}];V{[HG]|PP}EYWDMP{M(Oxidation (M))|F};[YV]MDWY[AG][Y{I|L}];[YV]M[YN][WE][Y{I|L}] 6.4158;6.2967;4.778;4.5483;3.7608;1.6569 +;+;-;-;-;- + 322 NaN NaN 133172 NaN 13100 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16449 70.142 NaN 368300 35 0 45371 0.264 -1 LEVPDMNI 8 52 473.73104613587077 945.4475393385416 2 473.73089599609375 MULTI HCD FTMS 0 0 0 16445 236655.8125 0.7433319136743977 -3 0.0748748779296875 4 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 20.453626601364224 0.4433031943603284 1 {I|L}N{I|L} 3 -1 34.253 0 0 3.6229 0 0 587.2263294650502 0 587.2263294650502 0 18.767959391884546 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {I|L}N{I|L} 3.6229 - 60 NaN NaN 140778.6 NaN 13101 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16450 70.145 NaN 217080 35 0 18529 0.261 -1 MPDVDFNL 8 59 483.7158656783491 965.4171784234982 2 483.71575927734375 MULTI HCD FTMS 0 0 0 16445 95191.4609375 0.48073422547958977 -2 0.04882049560546875 5 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 1 D{M(Oxidation (M))|F}N{I|L} 4 -1 36.498 0 0 3.7805 0 0 458.184373924025 0 458.184373924025 0 20.05440261473062 0 0 0 0.5 0 0 0.3054621874040891 D{M(Oxidation (M))|F}N{I|L} 3.7805 + + 79 NaN NaN 116219.1 NaN 13102 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16451 70.149 NaN 239870 35 0 30462 0.261 + 21086 PNELVDLTL 9 51 507.2792668441966 1012.5439807551933 2 507.2792663574219 MULTI HCD FTMS 0 0 0 16445 58537.64453125 0.1116109428622738 -9 0.23847198486328125 6 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 38.175570920033316 0.07371992880350783 1 D{I|L}T{I|L} 4 -1 49.993 0 0 4.9373 0 0 552.2905398087986 0 552.2905398087986 0 42.54554718523508 0 0 0 1.3807196863200843 0 0.4247425010840047 0 D{I|L}T{I|L} 4.9373 + + 55 NaN NaN 105666.2 NaN 13103 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16452 70.152 NaN 355460 35 0 74862 0.261 + 1050 AYGLVSATF 9 54 464.7421633236367 927.4697737140734 2 464.7422790527344 MULTI HCD FTMS 0 0 0 16445 69561.3515625 0.18658047249728255 -6 0.15334320068359375 7 Unmodified _AYGLVSATF_ ENSG00000156875|ENST00000370152|MFSD14A 64.23631603340823 0.01165516075559909 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}VSAT{M(Oxidation (M))|F} 9 0 + 66.845 0 0 7.2072 7.2072 93.327 0 0 0 10.857340314095651 60.647124887093824 10.857340314095651 21.178090289248388 0 2.274227503252014 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}VSAT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}E]SAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}V[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA][{I|L}A]AT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP][KT]T{M(Oxidation (M))|F} 7.2072;4.9238;4.7565;4.4277;3.0554 +;-;-;-;- + 132 NaN NaN 137422.7 NaN 13104 3346 16445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16454 70.157 NaN 735290 35 0 267390 0.327 + 14186 LALIEVDYFF 10 45 410.55343159526205 1228.6384653859861 3 410.55377197265625 MULTI HCD FTMS 0 0 0 16453 327982.0625 0.47006608963973395 9 -0.22467041015625 1 Unmodified _LALIEVDYFF_ REV__OR2M2|p.K338E|1|0.16|ENSG00000198601|chr1:248180997-248180997|A/G|missense_variant 9.5439744041441 0.42184090036563754 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.9462 0 0 753.4284840975992 0 753.4284840975992 0 28.750612633917 0 0 0 1 0 0 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 2.9462 - 20 NaN NaN 186383.6 NaN 13105 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16455 70.161 NaN 697150 35 0 43360 0.261 + -1 LMACGVYLAQT 11 103 621.7967992814879 1241.5790456297757 2 621.781982421875 MULTI HCD FTMS 0 0 0 16453 48689.65625 0.5664410879186339 4 -0.10117340087890625 2 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))AC(Carbamidomethyl (C))GVYLAQT_ REV__ENSG00000119285|ENST00000366582|HEATR1 19.256988751693697 0.28929563740265996 1 [YN]AWVEMAY 9 -1 62.567 0 0 5.0393 0 0 0 111.04937123809341 111.04937123809341 40.363445015490285 0 0 0 0 0 1.5228787452803376 0.2302046884880938 1.5473074971914091 [YN]AWVEMAY 5.0393 - 6130 NaN NaN 191467.4 NaN 13106 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16456 70.165 NaN 320240 35 0 20881 0.262 + 19715 NYAPAFTML 9 62 522.2461597613791 1042.477766589558 2 522.246337890625 MULTI HCD FTMS 0 0 0 16453 87679.9453125 0.6658517032831619 -5 0.1239013671875 3 Oxidation (M) _NYAPAFTM(Oxidation (M))L_ ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF 47.748688679222035 0.03472022231463587 1 {I|L}MA[YN]AT 7 7 42.287 0 0 4.0564 0 0 0 275.10740076236567 275.10740076236567 11.115652570594428 0 0 0 0 1.2302046884880937 1.6989700043360187 0.7614393726401688 0 {I|L}MA[YN]AT 4.0564 - 145 + NaN NaN 149654.9 NaN 13107 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16457 70.168 NaN 203280 35 0 19310 0.261 + 6033 FPDTGSLNL 9 56 482.2424242264056 NaN 0 482.2427673339844 PEAK HCD FTMS 0 0 0 16453 80641.375 0.6269367089530188 -1 0.02619171142578125 4 Unmodified _FPDTGSLNL_ ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF;NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant 43.85829265575387 0.06590164363483184 1 N[QP]EVV 6 8 25.648 0 0 2.6648 0 0 131.09274532605497 162.02301965885002 293.115764984905 0 0 0 0 0 0.5 0 0.3252574989159953 0.3494850021680094 N[QP]EVV 2.6648 - 88 + NaN NaN 109941.4 NaN 13108 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16458 70.172 NaN 220380 35 0 28411 0.261 + 7189 FSLFHASGVGF 11 57 584.792303379723 NaN 0 584.7921142578125 PEAK HCD FTMS 0 0 0 16453 65380.15625 0.5743984289300463 3 -0.074951171875 5 Unmodified _FSLFHASGVGF_ REV__ENST00000270066.10_1_19:44258808-44259084:-|nuORF 9.38312468134398 0.31550292094573573 1 KY{M(Oxidation (M))|F}SE{I|L} 6 -1 25.411 0 0 2.1764 0 0 166.0847778273391 231.07760034732658 397.1623781746657 0 0 0 0 0 0 0 0.3807196863200844 0 KY{M(Oxidation (M))|F}SE{I|L} 2.1764 - 99 + NaN NaN 120124.6 NaN 13109 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16459 70.175 NaN 325340 35 0 25173 0.261 + 12754 KYDEIFYNL 9 67 602.7991020556699 1203.5836511781397 2 602.7861328125 MULTI HCD FTMS 0 0 0 16453 13573.783203125 0.2642837998643477 -4 0.10106658935546875 6 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 10.150570793230772 0.27265765907388223 1 QD{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 7 6 42.325 0 0 3.5166 0 0 264.13930552260393 0 264.13930552260393 0 -10.032511901381866 -10.032511901381866 0 0 0.3494850021680094 0 0.6861818737241735 0.3252574989159953 QD{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 3.5166 - 1068 + NaN NaN 137456.8 NaN 13110 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16460 70.178 NaN 131140 35 0 11144 0.261 -1 MAGSFCWRML 10 61 637.7766266677767 NaN 0 637.7758178710938 PEAK HCD FTMS 0 0 0 16453 30705.85546875 0.6221933738023843 1 -0.02948760986328125 7 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))AGSFC(Carbamidomethyl (C))WRML_ nc|ENSG00000109685|O96028-2|NSD2 3.5964929083625545 0.337106189561315 1 A 1 -1 10.485 0 0 0.82326 0 0 911.4169790662189 288.06232629947505 1199.479305365694 0 0 0 0 0 0.5 0 0 0 A 0.82326 + + 7 + NaN NaN 109955.7 NaN 13111 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16461 70.181 NaN 75520 35 0 4847.9 0.263 + -1 LVCPDFPF 8 50 497.73873897324165 NaN 0 497.7394104003906 PEAK HCD FTMS 0 0 0 16453 8674.984375 0.36758000730593066 1 -0.02948760986328125 8 Carbamidomethyl (C) _LVC(Carbamidomethyl (C))PDFPF_ REV__ENSG00000085721|ENST00000198767|RRN3;REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF;REV__nc|ENSG00000085721|Q9NYV6-3|RRN3;REV__nc|ENSG00000085721|Q9NYV6-4|RRN3 2.8892196856762586 0.38822285293237185 1 SA 2 -1 8.5835 0 0 0.864 0 0 131.06346319863331 701.3235567682249 832.3870199668581 0 0 0 0 0 0 0 0 0 SA 0.864 - 7 + NaN NaN 95413.9 NaN 13112 3347 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16463 70.186 NaN 907820 35 0 205250 0.327 -1 FPANVMDVI 9 67 511.25409607697145 1020.4936392207429 2 511.2551574707031 MULTI HCD FTMS 0 0 0 16462 475996.90625 0.850397844959942 -4 0.10449981689453125 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 18.1463463914782 0.20357593197100715 1 {[TV]|[{I|L}S]}ED[KC]DV 8 -1 36.195 0 0 3.5468 0 0 0 128.07024982536464 128.07024982536464 3.9969684122009497 0 0 0 0 0.7302046884880937 1.3979400086720375 0.3494850021680094 0.3494850021680094 {[TV]|[{I|L}S]}ED[KC]DV 3.5468 - 332 NaN NaN 226097.4 NaN 13113 3348 16462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16464 70.191 NaN 706780 35 0 56552 0.261 + 16845 LYEHNFAFF 9 90 594.2808681720345 1186.547183410869 2 594.2799682617188 MULTI HCD FTMS 0 0 0 16462 198502.34375 0.688890684360132 -1 0.02948760986328125 2 Unmodified _LYEHNFAFF_ ENSG00000060642|ENST00000674202|PIGV 34.40172386719151 0.0910440009062557 1 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F} 9 7 + 37.034 0 0 3.1212 3.1212 82.175 0 0 0 18.522117475175417 16.316344586758177 16.316344586758177 6.817496819840656 0 0.5 0 1.0941876774005248 0 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D[RN]T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}V{M(Oxidation (M))|F}A[HD]{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}A[HD]{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}{[WN]|[YH]}{[CA]|SS}{I|L}{M(Oxidation (M))|F};[Q{I|L}][C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}V{[CA]|SS}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}{[WN]|[YH]}{[SA]|[TG]}Y{I|L};{[WT]|[RM]}{M(Oxidation (M))|F}{[WN]|[YH]}{[CA]|SS}{M(Oxidation (M))|F}{I|L} 3.1212;2.5466;2.1642;1.7038;1.082;0.43879;0.4299;0.19509 -;-;-;-;-;-;-;- 520 + NaN NaN 191173.2 NaN 13114 3348 16462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16465 70.194 NaN 345260 35 0 77090 0.261 + 7801 FYPPKVELF 9 52 570.3105901170402 1138.6066273008803 2 570.3096923828125 MULTI HCD FTMS 0 0 0 16462 115080.640625 0.07989036353019653 19 -0.50653076171875 3 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 22.736283301280096 0.1639198954644489 1 E{I|L}{M(Oxidation (M))|F} 3 6 17.409 0 0 1.529 0 0 731.4201527326187 0 731.4201527326187 0 1.7474250108400486 0 0 0 0.3252574989159953 0 0 0 + E{I|L}{M(Oxidation (M))|F} 1.529 + + 32 NaN NaN 128993.7 NaN 13115 3348 16462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16466 70.198 NaN 263160 35 0 35930 0.261 + -1 VCYCMSLF 8 47 491.1978831911458 980.3812134490917 2 491.1982727050781 MULTI HCD FTMS 0 0 0 16462 117710.453125 0.6667639947554351 -4 0.10449981689453125 4 Oxidation (M) _VCYCM(Oxidation (M))SLF_ REV__ENSG00000111432|ENST00000229030|FZD10 2.8892196856762586 0.5377058178582064 1 V{[QN]|[E{I|L}]|[KN]} 3 -1 7.4473 0 0 0.75963 0 0 621.1602489488948 0 621.1602489488948 0 4.348331157524969 0 0 0 0 0 0 0 V{[QN]|[E{I|L}]|[KN]} 0.75963 - 36 + NaN NaN 126344.2 NaN 13116 3348 16462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16467 70.201 NaN 230860 35 0 11786 0.261 + 22958 QYVYWLHML 9 67 634.8103877121284 1267.6062224910568 2 634.8109741210938 MULTI HCD FTMS 0 0 0 16462 39826.98046875 0.067808805225062 -12 0.32037353515625 5 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 40.44857923139169 0.06328554730241728 1 [YQ]VYW{I|L}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 0 + 46.176 0 0 3.6428 3.6428 85.626 0 0 0 30.93704052456225 5.6424927368725974 5.6424927368725974 10.969100130080562 0 0.7302046884880937 0 0 0 + + [YQ]VYW{I|L}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PREGYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VREGYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PE{[NV]|[RG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VE{[NV]|[RG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PE[YG]RV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VE[YG]RV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3.6428;2.7774;2.6788;2.4871;2.3024;2.1107;2.0101;1.358;1.2573;0.60516 +;-;-;-;-;-;-;-;-;- + 621 + NaN NaN 112834.9 NaN 13117 3348 16462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16468 70.204 NaN 141110 35 0 6139.7 0.263 + 32695 WPLKDLTL 8 60 493.28945192840405 984.5643509236081 2 493.2897644042969 MULTI HCD FTMS 0 0 0 16462 39959.078125 0.448067011167243 9 -0.21808624267578125 6 Unmodified _WPLKDLTL_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-6|ALS2CL 6.2057823575117 0.5327852213979698 1 WP{I|L} 3 5 19.922 0 0 2.0234 0 0 0 585.3239840143186 585.3239840143186 12.47425010840047 0 0 0 0 0 0 0 0 + WP{I|L} 2.0234 + + 20 + NaN NaN 103947.9 NaN 13118 3348 16462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16470 70.209 NaN 817130 35 0 187310 0.327 + 24430 RYLDEINLL 9 86 574.8189054301534 1147.6232579271068 2 574.819580078125 MULTI HCD FTMS 0 0 0 16469 474813.5 0.030982748359177983 26 -0.6898193359375 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 49.55428908609986 0.03219431099695407 1 DE{I|L}N{I|L}{I|L} 6 3 63.646 0 0 5.5459 0 0 432.2468434064469 0 432.2468434064469 0 33.750513525323136 0 0 0 1.3494850021680094 0 0.3494850021680094 0.25 + DE{I|L}N{I|L}{I|L} 5.5459 + + 1199 NaN NaN 202228.3 NaN 13119 3349 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16471 70.213 NaN 565550 35 0 77422 0.261 + 16929 LYGRLLVTF 9 86 541.3238242159241 1080.6330954986481 2 541.323974609375 MULTI HCD FTMS 0 0 0 16469 302167.875 0.31137708584673146 6 -0.15630340576171875 2 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 71.92227651296345 0.008466197542043549 1 VT{M(Oxidation (M))|F} 3 6 48.333 0 0 4.4726 0 0 715.43797484722 0 715.43797484722 0 6.957392241200097 0 0 0 1.5 0 0.7134679910804405 0 + VT{M(Oxidation (M))|F} 4.4726 + + 1147 + NaN NaN 165200.5 NaN 13120 3349 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16472 70.217 NaN 358770 35 0 17326 0.261 + 16701 LYAADSFSCLL 11 80 630.3022412524738 1258.5899295717475 2 630.788330078125 MULTI HCD FTMS 0 0 0 16469 36233.4921875 0.2494450009315422 -6 0.1532745361328125 3 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 41.8396318013385 0.12510225336016262 1 [YN]AWM[{I|L}T]CD 9 -1 47.156 0 0 3.7467 0 0 0 158.06146574858727 158.06146574858727 4.970449274355822 0 0 0 0 0 1.6989700043360187 0.4247425010840047 0.5451140161145328 [YN]AWM[{I|L}T]CD 3.7467 - 1352 NaN NaN 138472.2 NaN 13121 3349 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16473 70.22 NaN 486660 35 0 52686 0.261 + 3778 EPDPEEWQL 9 90 571.7540194082172 1141.4934858832344 2 571.75390625 MULTI HCD FTMS 0 0 0 16469 153806.65625 0.8323867576137024 -3 0.078399658203125 4 Unmodified _EPDPEEWQL_ ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3 49.93300154707207 0.03166451819912738 1 {[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{M(Oxidation (M))|F}WQ{I|L} 8 5 + 47.981 0 0 4.2034 4.2034 85.711 0 0 0 8.300756084811809 29.220902147270067 8.300756084811809 9.262137858390808 0 0.9247425010840047 0 1.110924374808178 0 {[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{M(Oxidation (M))|F}WQ{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{M(Oxidation (M))|F}W[AG]{I|L};[WY]{[CP]|[EA]}{M(Oxidation (M))|F}[VS]Q{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]EW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.2034;3.392;3.0696;0.095702 -;-;-;- 310 NaN NaN 179791.5 NaN 13122 3349 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16474 70.224 NaN 274910 35 0 19831 0.261 + 7909 FYVRITTF 8 67 523.7871635818315 1045.5597742304628 2 524.2706298828125 MULTI HCD FTMS 0 0 0 16469 14086.5732421875 0.5666163266127018 -2 0.05220794677734375 5 Unmodified _FYVRITTF_ REV__ENSG00000196159|ENST00000394329|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4;REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7|FAT4 19.438996006549623 0.45076845602799126 1 SMKR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 -1 58.264 0 0 5.5725 0 0 130.12131095096908 0 130.12131095096908 0 46.32531659313884 0 0 0 0 0 1.4291746928241125 0 SMKR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.5725 - 166 + NaN NaN 127956.5 NaN 13123 3349 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16475 70.227 NaN 716050 35 0 105320 0.261 -1 MPDLPNVGL 9 70 486.24694600107915 970.4793390689583 2 486.24664306640625 MULTI HCD FTMS 0 0 0 16469 123562.5078125 0.8627045786831691 11 -0.28729248046875 6 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.90604991867851 0.24021115267848145 1 VG{I|L} 3 -1 29.297 0 0 3.0188 0 0 683.2955189435562 0 683.2955189435562 0 3.261430418655493 0 0 0 0.8494850021680094 0 0 0 VG{I|L} 3.0188 + + 159 NaN NaN 211621.9 NaN 13124 3349 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16477 70.232 NaN 474850 35 0 57574 0.327 + 18307 MPEPTVLSL 9 78 501.7624514830848 1001.5103500329697 2 501.7626953125 MULTI HCD FTMS 0 0 0 16476 135154.078125 0.417498386692737 2 -0.05511474609375 1 Oxidation (M) _M(Oxidation (M))PEPTVLSL_ ENSG00000196683|ENST00000358435|TOMM7 52.268347100219714 0.028397529699942435 1 [EP]{M(Oxidation (M))|F}[TP]V{I|L}S{I|L} 9 2 + 63.284 0 0 6.3188 6.3188 90.839 0 0 0 13.290879486704043 37.597339262495936 13.290879486704043 15.496812376923046 0 1.4247425010840047 1.3010299956639813 0.6694451763165201 0 [EP]{M(Oxidation (M))|F}[TP]V{I|L}S{I|L};{[TV]|[{I|L}S]}[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}S{I|L};[EP]{[TV]|[{I|L}S]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[TP]V{I|L}S{I|L};[TP]{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}S{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}S{I|L} 6.3188;4.7715;4.6747;4.4765;3.2394;2.8992 -;-;-;+;-;- + 159 NaN NaN 165221.9 NaN 13125 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16478 70.236 NaN 1426800 35 0 220870 0.261 + 3053 EAFVWEPAM 9 89 548.2448142833094 1094.4750756334188 2 548.244873046875 MULTI HCD FTMS 0 0 0 16476 246735.484375 0.6578630507844162 -2 0.04546356201171875 2 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 100.37149154755038 0.004254194004462789 1 CNVWEPA{M(Oxidation (M))|F} 8 3 60.347 0 0 5.5138 0 0 130.0708474326047 0 130.0708474326047 0 44.40527250276361 0 0 0 2.305462187404089 0 0.3494850021680094 0 CNVWEPA{M(Oxidation (M))|F} 5.5138 - 1781 + NaN NaN 303093.6 NaN 13126 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16479 70.24 NaN 749950 35 0 37910 0.261 + 27865 TDRFFCFQF 9 108 605.7733708043498 NaN 0 605.79248046875 PEAK HCD FTMS 0 0 0 16476 9848.5546875 0.2933508854642014 1 -0.02622222900390625 3 Unmodified _TDRFFCFQF_ REV__ENSG00000163534|ENST00000368176|FCRL1;REV__ENST00000368175.7_1_1:157771904-157789836:-|nuORF;REV__ENST00000489998.5_1_1:157772059-157773899:-|nuORF;REV__nc|ENSG00000163534|Q96LA6-2|FCRL1;REV__nc|ENSG00000163534|Q96LA6-3|FCRL1;REV__nc|ENSG00000163534|Q96LA6-4|FCRL1 21.536976647645854 0.17708171045360593 1 PK{M(Oxidation (M))|F}N{I|L} 5 -1 14.781 0 0 1.2221 0 0 86.02599100053688 521.1683443658811 607.194335366418 0 0 0 0 0 0 0 0 0 PK{M(Oxidation (M))|F}N{I|L} 1.2221 - 840 + NaN NaN 204296.9 NaN 13127 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16480 70.243 NaN 486030 35 0 36498 0.261 + 7763 FYNLLTRTF 9 74 587.8165257685989 1173.6184986039978 2 587.8168334960938 MULTI HCD FTMS 0 0 0 16476 152819.4375 0.22611842389388953 10 -0.26454925537109375 4 Unmodified _FYNLLTRTF_ ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT 103.82355648334675 0.003950725192926219 1 [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 9 0 [Y{M(Oxidation (M))|F}] + + 94.562 2.8432 0.91676 8.0573 8.0573 66.868 0 0 0 0 76.37447475998292 0 0 0 2.9291746928241125 0 1.6298545532927076 0 + + [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 8.0573 + + 1157 + NaN NaN 153061.6 NaN 13128 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16481 70.247 NaN 238900 35 0 10632 0.261 + 7684 FYLEGGFSKF 10 78 597.7950005925837 NaN 0 597.7949829101562 PEAK HCD FTMS 0 0 0 16476 43986.61328125 0.4268750575266374 1 -0.02622222900390625 5 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 34.93206674587334 0.16487075143760066 1 {I|L}E 2 8 17.836 0 0 1.4943 0 0 310.13136435735754 638.2955416315061 948.4269059888636 0 0 0 0 0 0.9876954943324545 0 0 0 + {I|L}E 1.4943 + + 40 + NaN NaN 121000.2 NaN 13129 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16482 70.25 NaN 252380 35 0 14888 0.261 + -1 LYLPKNLLM 9 69 560.8236621520876 1119.6327713709752 2 560.8244018554688 MULTI HCD FTMS 0 0 0 16476 26975.080078125 0.388691708659048 2 -0.05511474609375 6 Oxidation (M) _LYLPKNLLM(Oxidation (M))_ REV__ENSG00000188316|ENST00000341276|ENO4;REV__nc|ENSG00000188316|A6NNW6-4|ENO4 18.13498045792455 0.20367413111508956 1 [Y{I|L}]{I|L} 3 -1 34.749 0 0 3.1036 0 0 0 727.3793981556894 727.3793981556894 1.3059715953668416 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.1036 + + 235 + NaN NaN 126017.1 NaN 13130 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16483 70.253 NaN 151280 35 0 17220 0.264 + 34838 YRMKMLQPF 9 55 405.21170479161634 NaN 0 405.5064697265625 PEAK HCD FTMS 0 0 0 16476 5188.271484375 0.678450436106483 -1 0.02274322509765625 7 Unmodified _YRMKMLQPF_ REV__ENSG00000100353|ENST00000216190|EIF3D;REV__nc|ENSG00000100353|O15371-2|EIF3D;REV__nc|ENSG00000100353|O15371-3|EIF3D 8.745405648335112 0.25286782695573473 1 Y 1 -1 6.9897 0 0 0.86462 0 0 489.24444122210144 153.07821069888908 642.3226519209906 0 0 0 0 0 0 0 0 0 Y 0.86462 + + 7 + NaN NaN 100760.4 NaN 13131 3350 16476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16485 70.258 NaN 10166000 35 0 2966000 0.327 + 24581 RYLPDTLLL 9 97 552.3265013397413 1102.6384497462825 2 552.3272094726562 MULTI HCD FTMS 0 0 0 16484 6606912 0.7260220789694415 -1 0.02622222900390625 1 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 72.96794272382148 0.008127836904478181 1 [Y{I|L}]RPDT{I|L}{I|L}{I|L} 9 2 + 86.693 0 0 7.8623 7.8623 92.792 0 0 0 12.245462655597095 16.478174818886373 12.245462655597095 12.245462655597095 0 1.8807196863200843 1.3979400086720375 1.2302046884880937 0 [Y{I|L}]RPDT{I|L}{I|L}{I|L};[YR]{I|L}PDT{I|L}{I|L}{I|L};[Y{I|L}]RPD{I|L}T{I|L}{I|L};[YR]{I|L}PD{I|L}T{I|L}{I|L};{I|L}{I|L}T[DP]RY{I|L}{I|L};[DP]T{I|L}{I|L}RY{I|L}{I|L};{I|L}{I|L}T[DP]R{I|L}Y{I|L};{I|L}{I|L}T[DP]{I|L}RY{I|L};[DP]T{I|L}{I|L}R{I|L}Y{I|L};[DP]T{I|L}{I|L}{I|L}RY{I|L} 7.8623;6.7517;6.2971;5.1866;4.0437;2.9093;2.7723;2.659;1.6379;1.5246 -;+;-;-;-;-;-;-;-;- + 746 NaN NaN 1408059.8 NaN 13132 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16486 70.262 NaN 5747400 35 0 615740 0.228 + 29418 TYTDRVFFL 9 121 581.3005047013379 1160.5864564694757 2 581.3010864257812 MULTI HCD FTMS 0 0 0 16484 3703309.25 0.7369424278722858 -1 0.02622222900390625 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 121.5340881639634 0.001118397630175091 1 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 111.28 0 0 9.5885 9.5885 94.767 0 0 0 23.569233304795034 86.58098009678187 23.569233304795034 11.020599913279625 0 2.8494850021680094 1.6989700043360187 2.197621246364342 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT]TDRV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT][RD]TV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}V;[YT][RD]TV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][RD]T{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L} 9.5885;8.639;8.4186;7.4739;7.469;7.102;6.925;6.5243;5.9754;5.755 +;-;-;-;-;-;-;-;-;- + 8093 NaN NaN 776776.1 NaN 13133 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16487 70.266 NaN 1140500 35 0 99318 0.261 + 32185 VYTDFAFRI 9 98 566.2955249358419 1130.5764969384836 2 566.2954711914062 MULTI HCD FTMS 0 0 0 16484 403359.5 0.5534055126246303 2 -0.05501556396484375 3 Unmodified _VYTDFAFRI_ ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF 125.52916310638031 0.0008761121089336018 1 [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L} 9 0 + 102.01 0 0 9.0228 9.0228 92.077 0 0 0 16.030768805449185 79.04783077187133 16.030768805449185 9.06295947543775 0 2.9247425010840047 1.6989700043360187 1.7971062485323517 0 + + [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]TD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};[YV]TA{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}R{I|L};[YT]VD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}A{M(Oxidation (M))|F}R{I|L};[YV]TA{[{M(Oxidation (M))|F}D]|MM}R{M(Oxidation (M))|F}{I|L};[YT]VD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}AR{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};{[ES]|[DT]|[{I|L}C]}[YV]{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L} 9.0228;8.2212;6.5612;6.1567;6.0574;5.7596;5.3551;5.2557;4.7108;4.541 +;-;-;-;-;-;-;-;-;- + 1734 NaN NaN 254246.8 NaN 13134 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16488 70.269 NaN 658130 35 0 65141 0.261 + 4452 EYIHALTLL 9 71 536.8055404551002 1071.5965279770003 2 536.8057861328125 MULTI HCD FTMS 0 0 0 16484 203594.90625 0.5795000637313028 3 -0.08121490478515625 4 Unmodified _EYIHALTLL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF 42.09456458481378 0.05572955244001856 1 QT{I|L}{I|L} 4 6 41.402 0 0 3.8636 0 0 598.3216514196522 0 598.3216514196522 0 21.480625354554373 0 0 0 0.8494850021680094 0 1 0 QT{I|L}{I|L} 3.8636 - 97 NaN NaN 175433.4 NaN 13135 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16489 70.272 NaN 1894400 35 0 420970 0.261 + 12802 KYEELFPAF 9 91 572.2896840640939 1142.5648151949877 2 572.2899169921875 MULTI HCD FTMS 0 0 0 16484 588062.125 0.07669169816606224 -9 0.22507476806640625 5 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 72.96794272382148 0.008127836904478181 1 APSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 9 3 79.691 0 0 6.9747 0 0 165.07914931465 0 165.07914931465 0 52.351453248366795 0 0 0 1.305462187404089 0 1.079689690656103 0 APSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 6.9747 - 1208 NaN NaN 375398.9 NaN 13136 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16490 70.275 NaN 1598900 35 0 209770 0.261 + 11655 IYVLTGHVA 9 86 486.77927105910976 971.5439891850195 2 486.7787780761719 MULTI HCD FTMS 0 0 0 16484 97383.78125 0.7045575631650909 -1 0.02622222900390625 6 Unmodified _IYVLTGHVA_ REV__ADAM21|p.D4H|1|0.07|ENSG00000139985|chr14:70457509-70457509|G/C|missense_variant 30.224811164608877 0.11021837014094292 1 {I|L}YR{I|L}{I|L}T 6 -1 68.536 0 0 7.0543 0 0 0 209.05678735904533 209.05678735904533 44.17735320183944 0 0 0 0 1.829689690656103 2 1.110924374808178 0 {I|L}YR{I|L}{I|L}T 7.0543 - 320 + NaN NaN 317491.9 NaN 13137 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16491 70.279 NaN 371060 35 0 68432 0.261 + 2776 DYDPLVVKL 9 63 531.2972888987813 1060.5800248643625 2 531.2979125976562 MULTI HCD FTMS 0 0 0 16484 98067.328125 0.42486690731344345 -1 0.02622222900390625 7 Unmodified _DYDPLVVKL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF 75.76082778847304 0.0072241045649327805 1 {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VVK{I|L} 9 0 + 79.733 0 0 7.5178 7.5178 96.17 0 0 0 17.78659694992122 16.478174818886373 16.478174818886373 79.7325155665839 0 2.2302046884880937 1.6989700043360187 1.110924374808178 0 + + {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VVK{I|L} 7.5178 + + 96 NaN NaN 137253.8 NaN 13138 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16492 70.282 NaN 160480 35 0 9327.7 0.261 + -1 SKMCPQCR 8 66 533.7347337134771 1065.4549144937541 2 533.7357177734375 MULTI HCD FTMS 0 0 0 16484 13525.78515625 0.1310149230441736 -4 0.10117340087890625 8 2 Carbamidomethyl (C) _SKMC(Carbamidomethyl (C))PQC(Carbamidomethyl (C))R_ REV__ENST00000451608.2_1_2:74475609-74479477:-|nuORF 7.289230182591677 0.5311777711368266 1 YC(Carbamidomethyl (C))R 3 -1 21.682 0 0 2.035 0 0 568.2488880841812 0 568.2488880841812 0 9.463950151760656 0 0 0 0 0 0 0 YC(Carbamidomethyl (C))R 2.035 - 58 NaN NaN 100473 NaN 13139 3351 16484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16494 70.287 NaN 2734300 35 0 280210 0.327 + 19743 NYAWVYYHL 9 101 614.7929287250602 1227.5713045169202 2 614.7918701171875 MULTI HCD FTMS 0 0 0 16493 1695053.875 0.030209377929726416 41 -1.1446609497070312 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 1 [YN]AWVYYH{I|L} 9 0 + 121.55 0 0 9.9018 9.9018 96.385 0 0 0 26.676127934005436 16.478174818886373 16.478174818886373 17.028937514676485 0 2.8494850021680094 1.6989700043360187 0 2.6223637474483468 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVY[W{I|L}]N;[YN]AWVW[YN]{I|L};[YN]AWVW{I|L}YN;[YN]WAVY[W{I|L}]N;{[WN]|[YH]}YAVYYH{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L} 9.9018;8.5146;7.7287;7.2693;7.0262;6.5721;5.8821;5.7247;5.639;5.5757 +;-;+;-;-;-;-;-;-;- + 2633 NaN NaN 496738.9 NaN 13140 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16495 70.291 NaN 789790 35 0 168250 0.261 + 27450 SYVRSLPFF 9 84 558.2988451643577 1114.5831373955152 2 558.2977294921875 MULTI HCD FTMS 0 0 0 16493 384744.09375 0.21269633856082804 9 -0.23224639892578125 2 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 83.42873516780209 0.004742894019233849 1 GVRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 73.243 0 0 6.5714 0 0 193.0752467856094 0 193.0752467856094 0 67.75875363860848 0 0 0 2.9291746928241125 0 0 0.3252574989159953 GVRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.5714 - 656 + NaN NaN 202184.2 NaN 13141 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16496 70.295 NaN 713700 35 0 101380 0.261 + 21087 PNELVDLTL 9 60 507.2792668441966 1012.5439807551933 2 507.2792053222656 MULTI HCD FTMS 0 0 0 16493 512440.6875 0.9770462879204869 -3 0.07785797119140625 3 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 38.175570920033316 0.07371992880350783 1 D{I|L}T{I|L} 4 -1 51.186 0 0 5.0552 0 0 552.291028860889 0 552.291028860889 0 28.1651564221918 0 0 0 1.5 0 0.4247425010840047 0 D{I|L}T{I|L} 5.0552 + + 50 NaN NaN 190627.6 NaN 13142 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16497 70.298 NaN 661970 35 0 47059 0.261 + 16846 LYEHNFAFF 9 77 594.2808681720345 1186.547183410869 2 594.2682495117188 MULTI HCD FTMS 0 0 0 16493 153969.265625 0.5343412614836353 3 -0.0784454345703125 4 Unmodified _LYEHNFAFF_ ENSG00000060642|ENST00000674202|PIGV 19.256988751693697 0.19398022840297344 1 NVWT{M(Oxidation (M))|F} 5 7 31.542 0 0 2.6583 0 0 521.2055531232437 0 521.2055531232437 0 13.381681563112405 0 0 0 0 0 0 0.3494850021680094 NVWT{M(Oxidation (M))|F} 2.6583 - 402 NaN NaN 178025.3 NaN 13143 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16498 70.302 NaN 264280 35 0 38766 0.263 -1 VPMEDINL 8 49 473.73104613587077 945.4475393385416 2 473.7311706542969 MULTI HCD FTMS 0 0 0 16493 284517.78125 0.8936655498835726 3 -0.0784454345703125 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 16.942295170755138 0.46913822049235215 1 {I|L}N{I|L} 3 -1 33.94 0 0 3.5899 0 0 587.2265601679976 0 587.2265601679976 0 18.455612550363796 0 0 0 0.4247425010840047 0 0 0.3494850021680094 {I|L}N{I|L} 3.5899 + + 35 NaN NaN 126054.8 NaN 13144 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16499 70.305 NaN 494090 35 0 60783 0.261 + -1 LYAADSFSCLL 11 81 630.3022412524738 1258.5899295717475 2 630.3029174804688 MULTI HCD FTMS 0 0 0 16493 300089.34375 1 0 0 6 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 34.40172386719151 0.17300472122796048 1 [YN]A[{M(Oxidation (M))|F}T]D{[DS]|[MA]|[CV]|TT}T{I|L}{I|L} 11 -1 + 50.723 0 0 4.0301 4.0301 89.635 0 0 0 4.743563524386509 19.53457336521868 4.743563524386509 50.72283254663663 0 0.4247425010840047 1.5228787452803376 0.8807196863200843 0 [YN]A[{M(Oxidation (M))|F}T]D{[DS]|[MA]|[CV]|TT}T{I|L}{I|L} 4.0301 - 686 NaN NaN 159262 NaN 13145 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16500 70.308 NaN 257300 35 0 89831 0.261 -1 ESCDLWSLGVI 11 38 639.8050590520436 1277.595565170887 2 639.8053588867188 MULTI HCD FTMS 0 0 0 16493 189062.53125 1 0 0 7 Carbamidomethyl (C) _ESC(Carbamidomethyl (C))DLWSLGVI_ ENSG00000100784|ENST00000614987|RPS6KA5;ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000100784|O75582-3|RPS6KA5;nc|ENSG00000162302|O75676-2|RPS6KA4;OTUB1-RPS6KA4|1|fusion;OTUB1-RPS6KA4|2|fusion 5.296884461304476 0.39569033063702824 1 V{I|L} 2 -1 25.969 0 0 2.0327 0 0 1047.4333868648378 0 1047.4333868648378 0 21.989700043360187 0 0 0 0.5 0 0 0 V{I|L} 2.0327 + + 4 NaN NaN 137686.6 NaN 13146 3352 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16502 70.313 NaN 489500 35 0 33309 0.327 + 28221 TLEDVPSYPPE 11 81 623.794076585852 NaN 0 623.8082885742188 PEAK HCD FTMS 0 0 0 16501 13039.0859375 0.4214327323614053 1 -0.0261993408203125 1 Unmodified _TLEDVPSYPPE_ ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM 12.240655878213236 0.3073969278659688 1 TQ{I|L}H{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7 10 36.675 0 0 2.9444 0 0 131.06581475910576 209.05671106510002 340.1225258242058 0 0 0 0 0 0 0 0.7614393726401688 0 TQ{I|L}H{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 2.9444 - 985 + NaN NaN 162470.8 NaN 13147 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16503 70.317 NaN 386370 35 0 86721 0.264 + 1051 AYGLVSATF 9 52 464.7421633236367 927.4697737140734 2 464.7422180175781 MULTI HCD FTMS 0 0 0 16501 127727.4453125 0.34259609052973633 1 -0.0261993408203125 2 Unmodified _AYGLVSATF_ ENSG00000156875|ENST00000370152|MFSD14A 64.23631603340823 0.01165516075559909 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}VSAT{M(Oxidation (M))|F} 9 0 + 67.598 0 0 7.2884 7.2884 93.127 0 0 0 5.232646631054152 61.655462488490684 5.232646631054152 17.98332479720628 0 2.3494850021680094 1.3979400086720375 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}VSAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]DAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA][{I|L}A]AT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}V[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}T[VG]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]V[VG]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}T{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]{[CP]|[EA]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]V{[VA]|[{I|L}G]}S{M(Oxidation (M))|F} 7.2884;5.3494;4.59;4.1885;3.5653;3.022;2.7017;2.2495;2.1583 +;-;-;-;-;-;-;-;- + 186 NaN NaN 155828.7 NaN 13148 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16504 70.321 NaN 311630 35 0 29618 0.261 + 1685 CFRNKFYNI 9 62 602.7991020556699 1203.5836511781397 2 602.7860107421875 MULTI HCD FTMS 0 0 0 16501 29261.587890625 0.5697279470338497 1 -0.0261993408203125 3 Unmodified _CFRNKFYNI_ REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF 13.90604991867851 0.24021115267848145 1 [YT][TA]{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}N{I|L} 10 -1 + 54.614 0 0 4.5376 4.5376 84.745 0 0 0 10.841671119825662 7.174165578762484 7.174165578762484 9.164539485499255 0 0 2 0 0 [YT][TA]{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}N{I|L};[YT][TA]{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}GG{I|L};[YT]{[WT]|[RM]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]QD[QP][{I|L}P]{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]QD[{I|L}P][QP]{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]QD[{I|L}P]G[PA]{[QD]|[EN]|[WG]|[KD]|[RS]} 4.5376;3.7762;2.3416;1.6497;1.5459;1.5115 -;-;-;-;-;- 570 NaN NaN 128331.6 NaN 13149 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16505 70.324 NaN 506380 35 0 42627 0.261 + 6047 FPDWREDVL 9 96 588.7877329764015 1175.5609130196028 2 588.7880249023438 MULTI HCD FTMS 0 0 0 16501 200624.203125 0.47757973679152027 -7 0.18238067626953125 4 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 47.7319792270244 0.034743597693959835 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L} 9 0 + 55.677 0 0 4.7362 4.7362 87.261 0 0 0 11.788384143273909 11.788384143273909 11.788384143273909 11.788384143273909 0 1.5356668758921828 2 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L};{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]TQTRT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREVVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[PG]G{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[PG]G{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHG{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHG{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[NP]{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[NP]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}V{I|L};{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]T[AG]TRT{M(Oxidation (M))|F} 4.7362;3.7334;3.6391;3.3312;3.2634;3.1189;3.0511;3.0279;2.9601;2.9501 +;-;-;-;-;-;-;-;-;- + 2536 NaN NaN 180402.9 NaN 13150 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16506 70.328 NaN 530670 35 0 136800 0.262 + 15985 LPQPSSIVL 9 61 477.28690468101496 952.5592564288299 2 477.2870178222656 MULTI HCD FTMS 0 0 0 16501 215487.140625 0.34409862586871875 -7 0.18238067626953125 5 Unmodified _LPQPSSIVL_ ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF 38.175570920033316 0.07371992880350783 1 S{I|L}V{I|L} 4 5 43.474 0 0 4.5639 0 0 522.2815340840798 0 522.2815340840798 0 26.484484532805155 0 0 0 1.2059771852360797 0 0.4247425010840047 0 + S{I|L}V{I|L} 4.5639 + + 132 NaN NaN 165294.3 NaN 13151 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16507 70.331 NaN 190530 35 0 17011 0.261 + 6071 FPEDTMVQ 8 57 483.7158656783491 965.4171784234982 2 483.7155456542969 MULTI HCD FTMS 0 0 0 16501 55408.29296875 0.27982197713056534 5 -0.120849609375 6 Unmodified _FPEDTMVQ_ REV__ENSG00000164128|ENST00000296533|NPY1R 12.531546534597751 0.5015908124873912 1 {M(Oxidation (M))|F}N{I|L} 3 -1 24.935 0 0 2.5828 0 0 573.2105295760879 0 573.2105295760879 0 3.063025007672877 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F}N{I|L} 2.5828 - 113 NaN NaN 108565.9 NaN 13152 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16508 70.334 NaN 364130 35 0 126430 0.261 + -1 LSTSLPIFFY 10 43 410.55343159526205 1228.6384653859861 3 410.8880615234375 MULTI HCD FTMS 0 0 0 16501 55499.0546875 0.11476602131220638 15 -0.41259765625 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LSTSLPIFFY_ REV__ENST00000415590.6_1_10:10828625-10834355:-|nuORF;REV__ENST00000434919.6_1_10:10828625-10836821:-|nuORF 6.630372943996041 0.44020808660041416 1 Y{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5206 0 0 900.4962667549299 0 900.4962667549299 0 25.48455006504028 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F} 2.5206 - 7 + NaN NaN 129464.7 NaN 13153 3353 16501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16510 70.339 NaN 741020 35 0 161670 0.327 + 7357 FVDPAQITM 9 64 511.25409607697145 1020.4936392207429 2 511.2550964355469 MULTI HCD FTMS 0 0 0 16509 420756.625 0.7517076738408285 2 -0.0422821044921875 1 Unmodified _FVDPAQITM_ ENSG00000167325|ENST00000300738|RRM1 22.65808497894818 0.16459551161911185 1 W{I|L}Y{M(Oxidation (M))|F}ES{I|L} 7 8 37.726 0 0 3.6969 0 0 64.01879664927067 0 64.01879664927067 0 8.15146474325326 0 0 0 1.1989700043360187 0 0.6307196863200843 0 W{I|L}Y{M(Oxidation (M))|F}ES{I|L} 3.6969 - 364 + NaN NaN 192155 NaN 13154 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16511 70.344 NaN 683690 35 0 47519 0.261 + 22959 QYVYWLHML 9 76 634.8103877121284 1267.6062224910568 2 635.3118896484375 MULTI HCD FTMS 0 0 0 16509 186077.421875 0.5144299684904514 -6 0.15290069580078125 2 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 129.2004930540761 0.0006534604433583781 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L} 10 8 + 81.053 0 0 6.3942 6.3942 86.117 0 0 0 19.093473137015167 28.479888977487548 19.093473137015167 5.083559388717376 0 1.7179001828205482 1.5228787452803376 0.5 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVYC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}VYC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WVYC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVY[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV[CG]{I|L} 6.3942;5.9931;5.7421;5.7174;5.6712;5.341;5.2702;5.0653;5.0191;4.9945 -;-;-;-;-;-;-;-;-;- 1880 NaN NaN 196181.6 NaN 13155 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16512 70.347 NaN 467380 35 0 51587 0.263 + 23513 RNFENISF 8 70 513.7552357916369 NaN 0 513.74267578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RNFENISF_ tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1 18.13498045792455 0.38579626240450227 1 {I|L}S 2 6 18.271 0 0 1.7817 0 0 660.3004058100331 162.05611597232658 822.3565217823597 0 0 0 0 0 0 0 0.7302046884880937 0 + {I|L}S 1.7817 + + 56 + NaN NaN 164352.6 NaN 13156 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16513 70.351 NaN 258530 35 0 25907 0.261 -1 FLSMCYCV 8 58 491.1978831911458 980.3812134490917 2 491.1982727050781 MULTI HCD FTMS 0 0 0 16509 63243.46484375 0.3582389171216069 2 -0.0422821044921875 4 Oxidation (M) _FLSM(Oxidation (M))CYCV_ ENSG00000111432|ENST00000229030|FZD10 2.8892196856762586 0.5377058178582064 1 V{[QN]|[E{I|L}]|[KN]} 3 -1 10.458 0 0 1.0667 0 0 621.1608593004573 0 621.1608593004573 0 7.235790156711097 0 0 0 0 0 0 0 V{[QN]|[E{I|L}]|[KN]} 1.0667 - 71 + NaN NaN 123846.5 NaN 13157 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16514 70.354 NaN 375060 35 0 27995 0.261 + 7849 FYSNIQTVI 9 75 542.7878989672685 1083.5612450013368 2 542.7877197265625 MULTI HCD FTMS 0 0 0 16509 174235.375 0.4915991733810208 -6 0.15290069580078125 5 Unmodified _FYSNIQTVI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 49.55428908609986 0.03219431099695407 1 D[SG]QTV{I|L} 7 4 48.976 0 0 4.5199 0 0 365.2065703030909 0 365.2065703030909 0 32.2931914553854 0 0 0 1.805462187404089 0 0.6747425010840047 0.3494850021680094 D[SG]QTV{I|L} 4.5199 - 245 NaN NaN 148746.4 NaN 13158 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16515 70.357 NaN 180600 35 0 12744 0.261 + 5007 FCPAWINL 8 63 482.2424242264056 NaN 0 482.2425231933594 PEAK HCD FTMS 0 0 0 16509 84371.4375 0.6559356329909468 6 -0.15711212158203125 6 Unmodified _FCPAWINL_ ENST00000278505.4_1_11:94863553-94863637:+|nuORF 34.18733598223924 0.36535021990301164 1 D[QP]EVV 6 7 26.159 0 0 2.7179 0 0 130.1036548529625 162.02295862369377 292.1266134766563 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 D[QP]EVV 2.7179 - 144 + NaN NaN 119875.6 NaN 13159 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16516 70.361 NaN 183900 35 0 25250 0.261 + 15199 LNGETVEII 9 54 494.2714909830619 986.5284290329238 2 494.2728271484375 MULTI HCD FTMS 0 0 0 16509 82866.9765625 0.9258701451377378 2 -0.0422821044921875 7 Unmodified _LNGETVEII_ tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1 31.26834338654808 0.10542797264966089 1 VE{I|L}{I|L} 4 5 45.745 0 0 4.637 0 0 514.2381235251323 0 514.2381235251323 0 38.75569708000178 0 0 0 1.3807196863200843 0 0 0 + VE{I|L}{I|L} 4.637 + + 73 NaN NaN 109186.4 NaN 13160 3354 16509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16518 70.365 NaN 649110 35 0 120090 0.327 + 24431 RYLDEINLL 9 91 574.8189054301534 1147.6232579271068 2 574.819091796875 MULTI HCD FTMS 0 0 0 16517 285207.21875 0.01861047229860204 32 -0.8902359008789062 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 45.739877483867886 0.03899552410870734 1 SVDE{I|L}N{I|L}{I|L} 8 3 63.129 0 0 5.5008 0 0 246.136522361525 0 246.136522361525 0 46.887152772825615 0 0 0 1.566901560044258 0 0.3494850021680094 0 SVDE{I|L}N{I|L}{I|L} 5.5008 - 544 NaN NaN 181186.7 NaN 13161 3355 16517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16519 70.37 NaN 160520 35 0 10892 0.261 + 34541 YPIEKFISL 9 57 555.3153593331766 1108.6161657331531 2 555.3154296875 MULTI HCD FTMS 0 0 0 16517 29669.3046875 0.4631450689192248 3 -0.0685272216796875 2 Unmodified _YPIEKFISL_ ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF;nc|ENSG00000107186|O75970-2|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-5|MPDZ 19.361941925380144 0.1930734562688509 1 YP{I|L} 3 6 47.307 0 0 4.2672 0 0 0 732.3951510065061 732.3951510065061 36.84955642535897 0 0 0 0 0.3494850021680094 2 0 0 + YP{I|L} 4.2672 + + 70 + NaN NaN 120370.1 NaN 13162 3355 16517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16520 70.373 NaN 71980 35 0 6810.6 0.261 + 19497 NQQVWICVVF 10 47 618.3160711739104 NaN 0 618.3193359375 PEAK HCD FTMS 0 0 0 16517 32510.943359375 1 0 0 3 Unmodified _NQQVWICVVF_ REV__nc|ENSG00000100336|Q9BPW4|APOL4 3.5964929083625545 0.337106189561315 1 E 1 -1 6.9897 0 0 0.56614 0 0 165.07042061836347 937.5020235650999 1102.5724441834634 0 0 0 0 0 0 0 0 0 E 0.56614 - 3 + NaN NaN 90358.2 NaN 13163 3355 16517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16521 70.377 NaN 122700 35 0 5925.2 0.261 + -1 AYGQYHCHMM 10 59 636.7313404079515 1271.448127882703 2 636.7308349609375 MULTI HCD FTMS 0 0 0 16517 46968.03125 0.908344767139415 -8 0.2085113525390625 4 2 Oxidation (M) _AYGQYHCHM(Oxidation (M))M(Oxidation (M))_ REV__ADAM18|p.C437Lfs*6|1|0.31|ENSG00000168619|chr8:39663871-39663872|-/T|frameshift_variant;REV__ENSG00000168619|ENST00000265707|ADAM18;REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;REV__nc|ENSG00000168619|Q9Y3Q7-3|ADAM18 3.944395688203298 0.4544253912184634 1 Q{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0425 0 0 978.3102874226383 0 978.3102874226383 0 12.016675202793719 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F} 2.0425 - 26 NaN NaN 99648 NaN 13164 3355 16517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16523 70.382 NaN 1030700 35 0 75698 0.327 + 13090 KYLELCVDL 9 100 548.2916503143242 1094.5687476954483 2 548.2919311523438 MULTI HCD FTMS 0 0 0 16522 420779.34375 0.5645181563109852 -2 0.0422821044921875 1 Unmodified _KYLELCVDL_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 74.19965305603844 0.007729275404663812 1 E{I|L}CVD{I|L} 6 3 61.419 0 0 5.6113 0 0 404.2420089862089 0 404.2420089862089 0 30.639406530592268 0 0 0 2.2302046884880937 0 0.4247425010840047 0 + E{I|L}CVD{I|L} 5.6113 + + 3375 NaN NaN 235157.2 NaN 13165 3356 16522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16524 70.386 NaN 370120 35 0 24874 0.261 + 22932 QYSYIDFKF 9 91 605.792543883473 1209.5705348337458 2 605.7927856445312 MULTI HCD FTMS 0 0 0 16522 201308.5625 0.5603204796618041 5 -0.13764190673828125 2 Unmodified _QYSYIDFKF_ ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|1|fusion;RNF216-MTHFD1L|2|fusion 43.981846655682396 0.04706587046877104 1 [YT]YN{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 3 + 40.287 0 0 3.3307 3.3307 81.275 0 0 0 4.304009240123889 6.43677577293159 4.304009240123889 4.304009240123889 0 1.774227503252014 1.5228787452803376 1.1861818737241734 0.9247425010840047 [YT]YN{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};YYTN{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[HG]|PP}PSY{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YT]YK{I|L}YS{[WS]|[C(Carbamidomethyl (C)){I|L}]};YYTK{I|L}YS{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YT]R{I|L}[DC]{M(Oxidation (M))|F}[RH];[YT]YGG{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ET]|[MV]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[RH]{M(Oxidation (M))|F}D{I|L}YG[R{M(Oxidation (M))|F}];YYTGG{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3.3307;2.9749;2.7986;2.787;2.4312;1.8886;1.8049;1.8005;1.6778;1.4491 -;-;-;-;-;-;-;-;-;- 2069 NaN NaN 140217.8 NaN 13166 3356 16522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16525 70.39 NaN 278870 35 0 13036 0.261 -1 TCKMLFTF 8 81 524.2550036117516 1046.495454290303 2 524.270263671875 MULTI HCD FTMS 0 0 0 16522 20873.009765625 0.3334900565676532 -3 0.0684814453125 3 Carbamidomethyl (C) _TC(Carbamidomethyl (C))KMLFTF_ ENST00000545653.5_1_5:39373349-39375117:-|nuORF 14.581692164780916 0.48650662947107914 1 {[MS]|[{M(Oxidation (M))|F}A]}MKR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8 -1 {[MS]|[{M(Oxidation (M))|F}A]} + + 48.351 -0.42288 -0.19392 4.6203 4.6203 60.95 0 0 0 0 20.63842945940005 0 0 0 0 0 1.4194451763165201 0 {[MS]|[{M(Oxidation (M))|F}A]}MKR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.6203 - 424 + NaN NaN 125671.5 NaN 13167 3356 16522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16526 70.393 NaN 282150 35 0 24666 0.261 + 10181 IFTDVALKF 9 55 527.3025213913324 1052.5904898494648 2 527.302490234375 MULTI HCD FTMS 0 0 0 16522 89956.2578125 0.20486673023944696 -4 0.0946044921875 4 Unmodified _IFTDVALKF_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 66.45667989310934 0.010234776021261575 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{[MG]|[TS]}{I|L}K{M(Oxidation (M))|F} 9 3 + 54.676 0 0 5.1944 5.1944 83.233 0 0 0 0.9936247538460918 27.331655954731247 0.9936247538460918 3.2660625688767198 0 2.1861818737241734 0 0.7742275032520141 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{[MG]|[TS]}{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[DV]A{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{[MG]|[TS]}K{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[DV]AK{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{[MG]|[TS]}K{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[DV]AK{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVV[KS]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVV[KS]{M(Oxidation (M))|F}{I|L} 5.1944;4.8841;4.1014;3.7911;3.0544;2.7441;2.031;0.98397 -;+;-;-;-;-;-;- + 373 NaN NaN 125140.1 NaN 13168 3356 16522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16527 70.396 NaN 291720 35 0 52988 0.261 + 1738 CKRCMEPSNE 10 63 598.7454926658418 1195.4764323984834 2 599.2470703125 MULTI HCD FTMS 0 0 0 16522 56622.703125 0.4526086471866777 -4 0.0946044921875 5 Unmodified _CKRCMEPSNE_ REV__ENSG00000173535|ENST00000356864|TNFRSF10C 5.731851221503515 0.44496410492002586 1 HQ[Q{I|L}] 4 -1 19.297 0 0 1.6142 0 0 671.2049002713335 0 671.2049002713335 0 7.35985638199878 0 0 0 0 0 0 0.6989700043360187 HQ[Q{I|L}] 1.6142 - 78 + NaN NaN 127665.9 NaN 13169 3356 16522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16528 70.4 NaN 80980 35 0 7185.6 0.264 + 24854 RYQCRECGKA 10 48 405.18894002283133 NaN 0 405.50677490234375 PEAK HCD FTMS 0 0 0 16522 7240.435546875 0.7637912042007143 -2 0.0422821044921875 6 Unmodified _RYQCRECGKA_ ENSG00000235109|ENST00000344279|ZSCAN31;nc|ENSG00000235109|Q96LW9-2|ZSCAN31 3.072263186857199 0.33755485754653514 1 H 1 10 6.9897 0 0 0.86467 0 0 146.03668172039016 522.2533663385374 668.2900480589276 0 0 0 0 0 0 0 0 0 H 0.86467 - 4 + NaN NaN 95642.1 NaN 13170 3356 16522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16530 70.404 NaN 8375800 35 0 2267300 0.327 + 12803 KYEELFPAF 9 92 572.2896840640939 1142.5648151949877 2 572.2902221679688 MULTI HCD FTMS 0 0 0 16529 4712172.5 0.6145345801286198 -3 0.065185546875 1 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 99.75527289724121 0.004270341300239591 1 [VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 10 4 + 108.32 0 0 9.4805 9.4805 91.075 0 0 0 5.563025007672877 11.785437214322343 5.563025007672877 5.563025007672877 0 2.3494850021680094 0 2.7658715643802765 0 [VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YK]EE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YE]KE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]{I|L}ESPA{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SNK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SE[PA]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SGGK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YE]K{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YK]ENK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 9.4805;8.9936;8.4091;8.3106;6.5612;5.9723;5.4302;5.1702;5.1478;4.6102 -;+;-;-;-;-;-;-;-;- + 2155 NaN NaN 857709.2 NaN 13171 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16531 70.409 NaN 3943500 35 0 1202900 0.26 + 24582 RYLPDTLLL 9 97 552.3265013397413 1102.6384497462825 2 552.3268432617188 MULTI HCD FTMS 0 0 0 16529 2077435.5 0.22828577717319698 5 -0.140899658203125 2 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 66.45667989310934 0.010234776021261575 1 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L} 9 2 + 77.814 0 0 7.0571 7.0571 91.853 0 0 0 13.494850021680094 16.478174818886373 13.494850021680094 13.494850021680094 0 1.774227503252014 1.3979400086720375 1.1989700043360187 0 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L};[YR]{I|L}[DP]T{I|L}{I|L}{I|L};[Y{I|L}]R[DP]{I|L}T{I|L}{I|L};[YR]{I|L}[DP]{I|L}T{I|L}{I|L};[DP]T{I|L}[YR]{I|L}{I|L}{I|L};[DP]T{I|L}[R{I|L}]Y{I|L}{I|L};[DP][KQ]{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}{I|L};[YR]{I|L}[DP]{I|L}{I|L}T{I|L};[DP]T{I|L}[R{I|L}]{I|L}Y{I|L};[DP]T{I|L}{I|L}{I|L}RY{I|L} 7.0571;5.8332;5.5885;4.3646;3.5123;2.2641;1.4705;1.1787;0.99276;0.90487 -;+;-;-;-;-;-;-;-;- + 548 NaN NaN 671344.5 NaN 13172 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16532 70.412 NaN 2603600 35 0 290540 0.261 + 29419 TYTDRVFFL 9 108 581.3005047013379 1160.5864564694757 2 581.3007202148438 MULTI HCD FTMS 0 0 0 16529 1659913.875 0.3303156389387124 5 -0.140899658203125 3 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 121.5340881639634 0.001118397630175091 1 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 108.62 0 0 9.3587 9.3587 94.421 0 0 0 21.571334227024636 90.51226981439916 21.571334227024636 10.440680443502757 0 2.8494850021680094 1.6989700043360187 1.9308845489566888 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TDRV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT][RD]TV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}V;[YT][RD]TV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][RD]T{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L} 9.3587;8.4591;8.1887;7.2891;7.0188;6.9721;6.8052;5.9857;5.9056;5.6352 +;-;-;-;-;-;-;-;-;- + 2475 NaN NaN 482336.3 NaN 13173 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16533 70.416 NaN 604300 35 0 28047 0.261 + 32186 VYTDFAFRI 9 80 566.2955249358419 1130.5764969384836 2 566.2962036132812 MULTI HCD FTMS 0 0 0 16529 89029.0546875 0.1221470416534684 8 -0.2326812744140625 4 Unmodified _VYTDFAFRI_ ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF 63.960520009940105 0.0120409805053046 1 {M(Oxidation (M))|F}A{M(Oxidation (M))|F}DTM{I|L} 7 7 64.175 0 0 5.6763 0 0 287.1959706037125 0 287.1959706037125 0 49.22630726946174 0 0 0 1.892159058960253 0 0.7302046884880937 0 {M(Oxidation (M))|F}A{M(Oxidation (M))|F}DTM{I|L} 5.6763 - 712 NaN NaN 169247.5 NaN 13174 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16534 70.419 NaN 430610 35 0 74593 0.261 + -1 FEELMEVIL 9 62 569.7896718684848 1137.5647908037695 2 569.7894287109375 MULTI HCD FTMS 0 0 0 16529 116155.4453125 0.8351147515606273 2 -0.05896759033203125 5 Oxidation (M) _FEELM(Oxidation (M))EVIL_ REV__ENSG00000218819|ENST00000405799|TDRD15 11.640296217721598 0.25978676193971967 1 V{I|L}{I|L} 3 -1 33.5 0 0 2.9449 0 0 794.3207874982437 0 794.3207874982437 0 24.547509540478032 0 0 0 0.8807196863200843 0 0 0 V{I|L}{I|L} 2.9449 + + 36 NaN NaN 163202.3 NaN 13175 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16535 70.422 NaN 593210 35 0 66592 0.261 + 17068 LYKVAELH 8 63 486.77927105910976 971.5439891850195 2 486.7796630859375 MULTI HCD FTMS 0 0 0 16529 30401.37890625 0.21994957645009391 5 -0.140899658203125 6 Unmodified _LYKVAELH_ REV__ENSG00000181090|ENST00000460843|EHMT1;REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF;REV__nc|ENSG00000181090|Q9H9B1-3|EHMT1 28.486842064014134 0.3788298654084067 1 {I|L}Y[HT]{[VA]|[{I|L}G]}VG{I|L} 9 -1 + 48.178 0 0 4.9589 4.9589 88.321 0 0 0 24.225534297491294 2.961434083857526 2.961434083857526 14.24742501084004 0 0.6989700043360187 2 0.805462187404089 0 {I|L}Y[HT]{[VA]|[{I|L}G]}VG{I|L};Y{I|L}[HT]{[VA]|[{I|L}G]}VG{I|L};{I|L}T{[WN]|[YH]}{[VA]|[{I|L}G]}VG{I|L};T{I|L}{[WN]|[YH]}{[VA]|[{I|L}G]}VG{I|L} 4.9589;3.4924;2.8905;1.5237 -;-;-;- 110 + NaN NaN 189514.3 NaN 13176 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16536 70.426 NaN 150870 35 0 9927.4 0.261 + -1 HSCSFLTTN 9 53 533.7347337134771 1065.4549144937541 2 533.734375 MULTI HCD FTMS 0 0 0 16529 38695.49609375 0.3748164993243422 2 -0.05896759033203125 7 Carbamidomethyl (C) _HSC(Carbamidomethyl (C))SFLTTN_ REV__ENSG00000159110|ENST00000342136|IFNAR2;REV__nc|ENSG00000159110|P48551-2|IFNAR2;REV__nc|ENSG00000159110|P48551-3|IFNAR2 3.944395688203298 0.32111559684428237 1 YC(Carbamidomethyl (C))R 3 -1 21.682 0 0 2.035 0 0 568.2490101544937 0 568.2490101544937 0 7.870156338638592 0 0 0 0 0 0 0 YC(Carbamidomethyl (C))R 2.035 - 15 NaN NaN 106729.2 NaN 13177 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16537 70.429 NaN 51893 35 0 5392.2 0.262 -1 NKNDTKLQNSM 11 39 436.8794789813176 NaN 0 436.87957763671875 PEAK HCD FTMS 0 0 0 16529 24045.24609375 1 0 0 8 Oxidation (M) _NKNDTKLQNSM(Oxidation (M))_ tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105099.2 NaN 13178 3357 16529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16539 70.434 NaN 2300200 35 0 252800 0.327 + 19744 NYAWVYYHL 9 98 614.7929287250602 1227.5713045169202 2 614.7928466796875 MULTI HCD FTMS 0 0 0 16538 1196866.375 0.021330642752435618 47 -1.3374786376953125 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 1 [YN]AWVYYH{I|L} 9 0 + 123.24 0 0 10.04 10.04 95.724 0 0 0 28.895840698003 16.478174818886373 16.478174818886373 13.322646798160562 0 2.8494850021680094 1.6989700043360187 0 2.615356566548286 + + [YN]AWVYYH{I|L};[YN]AWVYHY{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};[YN]AWVWNY{I|L};NYAWVYYH{I|L};[YN]AVWYHY{I|L};[YN]WAVYHY{I|L};NYADAV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVWGGY{I|L} 10.04;8.9542;8.6636;8.6523;7.7105;7.6856;7.5783;7.567;7.0615;6.9603 +;-;-;-;-;+;-;-;-;- + 4987 NaN NaN 435468.7 NaN 13179 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16540 70.438 NaN 781240 35 0 107460 0.262 + 10511 IPENVDITL 9 72 507.2792668441966 1012.5439807551933 2 507.27935791015625 MULTI HCD FTMS 0 0 0 16538 489844.09375 0.9339624372785825 3 -0.08527374267578125 2 Unmodified _IPENVDITL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENST00000514842.5_1_4:39459094-39460113:-|nuORF;RPL9-UGDH|1|fusion;RPL9-UGDH|2|fusion 43.77239144664712 0.04802738721622131 1 D{I|L}T{I|L} 4 5 50.745 0 0 5.0117 0 0 552.2908540062938 0 552.2908540062938 0 26.41142169743297 0 0 0 1.5 0 0.3807196863200844 0 + D{I|L}T{I|L} 5.0117 + + 147 NaN NaN 201103.3 NaN 13180 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16541 70.442 NaN 517650 35 0 25802 0.261 + 2908 DYSPYFKTI 9 90 567.2791460627044 1132.5437391922087 2 567.2794189453125 MULTI HCD FTMS 0 0 0 16538 163597.03125 0.006635143131881703 274 -6.878448486328125 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 59.368380827593164 0.01846506874148156 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 34.736 0 0 3.0671 0 0 0 764.3983372039787 764.3983372039787 13.700229199238922 0 0 0 0 0.8807196863200843 1.6989700043360187 0.3252574989159953 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.0671 + + 358 NaN NaN 158886.3 NaN 13181 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16542 70.445 NaN 365260 35 0 44239 0.261 + 2777 DYDPLVVKL 9 70 531.2972888987813 1060.5800248643625 2 531.2980346679688 MULTI HCD FTMS 0 0 0 16538 99021.703125 0.4290016417088827 6 -0.16713714599609375 4 Unmodified _DYDPLVVKL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF 62.57269311338072 0.013982455292112035 1 {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VV[K{I|L}] 9 0 + 54.929 0 0 5.1792 5.1792 89.704 0 0 0 4.163865622122678 4.163865622122678 4.163865622122678 21.109696043945334 0 2.086696871556164 1.6989700043360187 0 0.8252574989159953 + + {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VV[K{I|L}];{[YD]|[{M(Oxidation (M))|F}M]}[VP]EVV[K{I|L}];{[YD]|[{M(Oxidation (M))|F}M]}RR[NP][K{I|L}] 5.1792;3.1888;2.8253 +;-;- + 179 + NaN NaN 139393.4 NaN 13182 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16543 70.449 NaN 360070 35 0 80339 0.261 + 27451 SYVRSLPFF 9 58 558.2988451643577 1114.5831373955152 2 558.298095703125 MULTI HCD FTMS 0 0 0 16538 168656.03125 0.09323735154303611 15 -0.4127197265625 5 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 38.61474834105838 0.07170385841135779 1 {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 44.747 0 0 4.0147 4.0147 89.37 0 0 0 2.3244780889332617 33.460696996448576 2.3244780889332617 44.74722841413467 0 2.0924778212679485 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0147 + + 133 NaN NaN 138243.2 NaN 13183 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16544 70.452 NaN 306250 35 0 13189 0.261 + -1 YNCKFPREE 9 85 621.7823641191582 1241.5501753051162 2 621.2745361328125 MULTI HCD FTMS 0 0 0 16538 133112.4375 0.16218179004827152 46 -1.308013916015625 6 Carbamidomethyl (C) _YNC(Carbamidomethyl (C))KFPREE_ REV__ENSG00000173275|ENST00000339249|ZNF449 15.847184025352803 0.2234401846867398 1 [YN]A{M(Oxidation (M))|F}VVWA 8 -1 61.221 0 0 4.931 0 0 0 288.06528695966625 288.06528695966625 27.231770976658552 0 0 0 0 1.8494850021680094 1.5228787452803376 0 0.6139829889124311 [YN]A{M(Oxidation (M))|F}VVWA 4.931 - 1785 NaN NaN 136663.3 NaN 13184 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16545 70.455 NaN 147620 35 0 21375 0.263 + 15922 LPMSLRKM 8 45 488.2778089495496 974.5410649658992 2 488.27789306640625 MULTI HCD FTMS 0 0 0 16538 109968.296875 1 0 0 7 Unmodified _LPMSLRKM_ ENST00000378953.8_2_5:131746438-131755609:+|nuORF 10.823927491677226 0.514154816617796 1 {I|L}PQ 3 6 30.005 0 0 3.0789 0 0 0 633.3228749035668 633.3228749035668 19.20818753952375 0 0 0 0 0.3807196863200844 0 0 0 {I|L}PQ 3.0789 - 26 + NaN NaN 99455.1 NaN 13185 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16546 70.459 NaN 129860 35 0 12188 0.261 -1 RYAMTVWYF 9 45 626.7935929985357 NaN 0 626.7948608398438 PEAK HCD FTMS 0 0 0 16538 33519.75 0.7676734386276333 -1 0.0294647216796875 8 Oxidation (M) _RYAM(Oxidation (M))TVWYF_ ENSG00000129521|ENST00000250457|EGLN3 13.042465956692817 0.23204487237355156 1 YW{M(Oxidation (M))|F}M 4 -1 16.899 0 0 1.3502 0 0 165.0736146098214 456.27521692447505 621.3488315342964 0 0 0 0 0 0.4247425010840047 0 0 0 YW{M(Oxidation (M))|F}M 1.3502 - 48 + NaN NaN 101176.4 NaN 13186 3358 16538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16548 70.463 NaN 1156800 35 0 110690 0.327 + 7350 FVDETWQQL 9 108 583.2796599425349 1164.5447669518696 2 583.2799682617188 MULTI HCD FTMS 0 0 0 16547 644067.0625 0.767095120312118 -1 0.02950286865234375 1 Unmodified _FVDETWQQL_ ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2 129.77232118876745 0.0006187813247758304 1 [{M(Oxidation (M))|F}V]DETWQQ{I|L} 9 0 + 77.445 0 0 6.6502 6.6502 89.138 0 0 0 4.748869537984319 32.45059363651414 4.748869537984319 9.208187539523749 0 2.1549471895720984 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]DETWQQ{I|L};[{M(Oxidation (M))|F}V]DETWQ[AG]{I|L};[{M(Oxidation (M))|F}V]DETW[AG]Q{I|L};[{M(Oxidation (M))|F}V]DETW[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}WQQ{I|L};{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}ADQQ{I|L};{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}WQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}W[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}T{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QQ{I|L};[WQ]QT{I|L}{M(Oxidation (M))|F}DD{I|L} 6.6502;5.8595;5.8595;5.0725;4.7373;4.103;3.9466;3.9466;3.9126;3.8496 +;-;-;-;-;-;-;-;-;- + 8210 NaN NaN 253530.8 NaN 13187 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16549 70.468 NaN 537170 35 0 35818 0.261 + 18061 MLYEYKRDE 9 88 623.7938784530328 NaN 0 623.8087768554688 PEAK HCD FTMS 0 0 0 16547 15136.107421875 0.6195775877183409 -1 0.02950286865234375 2 Unmodified _MLYEYKRDE_ REV__ENSG00000112773|ENST00000320172|TENT5A;REV__nc|ENSG00000112773|Q96IP4-2|TENT5A 20.41453444215458 0.1846157837989407 1 TQ{I|L}{M(Oxidation (M))|F}HED 7 -1 30.895 0 0 2.4804 0 0 131.06362833154554 241.0976503961547 372.1612787277003 0 0 0 0 0 0 0 0.5 0.2742275032520141 TQ{I|L}{M(Oxidation (M))|F}HED 2.4804 - 686 + NaN NaN 168299.5 NaN 13188 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16550 70.475 NaN 657810 35 0 52348 0.261 + 6048 FPDWREDVL 9 84 588.7877329764015 1175.5609130196028 2 588.7877197265625 MULTI HCD FTMS 0 0 0 16547 259362 0.6174032532682354 -1 0.02950286865234375 3 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 57.24910588100465 0.021429789259086996 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L} 9 0 + 62.877 0 0 5.3487 5.3487 88.151 0 0 0 24.38908619073706 39.08559477871185 24.38908619073706 11.102065882283796 0 1.5924778212679485 2 0.6139829889124311 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TA]Y[HN]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREVVE;[DP]{M(Oxidation (M))|F}WREDV{I|L};{M(Oxidation (M))|F}PD[VS]{I|L}[HN]T{M(Oxidation (M))|F};[DP][WR]{M(Oxidation (M))|F}EDV{I|L};[DP]{M(Oxidation (M))|F}[TA]Y[HN]V{I|L};[DP]{M(Oxidation (M))|F}WREVVE;[DP][WR]{M(Oxidation (M))|F}EVVE 5.3487;4.4043;3.706;3.03;2.5505;2.3339;2.0856;1.3873;0.69128 +;-;-;-;-;-;-;-;- + 800 NaN NaN 185906 NaN 13189 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16551 70.478 NaN 426940 35 0 22870 0.261 -1 FVYCNERSL 9 92 594.2808681720345 1186.547183410869 2 594.2692260742188 MULTI HCD FTMS 0 0 0 16547 20885.419921875 0.07248161886314858 9 -0.26224517822265625 4 Carbamidomethyl (C) _FVYC(Carbamidomethyl (C))NERSL_ ENSG00000185070|ENST00000330753|FLRT2 32.30548876998284 0.10066689432505688 1 [YV]{M(Oxidation (M))|F}{[WT]|[RM]}[HS]T{M(Oxidation (M))|F} 9 -1 + 34.9 0 0 2.9413 2.9413 79.868 0 0 0 8.521825181113627 14.53788113901205 8.521825181113627 1.7609125905568135 0 0 1.3979400086720375 0 0.3807196863200844 [YV]{M(Oxidation (M))|F}{[WT]|[RM]}[HS]T{M(Oxidation (M))|F};[YV]A{[QG]|[NA]}{[ES]|[DT]|[{I|L}C]}WT{M(Oxidation (M))|F};[YV]QQ{[ES]|[DT]|[{I|L}C]}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}[MN]WT{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[HQ]{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}[SG]TWT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y{[WT]|[RM]}[HS]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S{[QG]|[NA]}{[ES]|[DT]|[{I|L}C]}WT{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))Q]{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L};[YV]{M(Oxidation (M))|F}{[WT]|[RM]}{[QC]|[C(Carbamidomethyl (C))A]}Q{I|L} 2.9413;2.7929;2.6445;2.2231;2.2006;2.1178;1.7857;1.6373;1.6022;1.5862 -;-;-;-;-;-;-;-;-;- 766 NaN NaN 162168.3 NaN 13190 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16552 70.482 NaN 149530 35 0 21120 0.262 -1 LEVPDMNI 8 52 473.73104613587077 945.4475393385416 2 473.73114013671875 MULTI HCD FTMS 0 0 0 16547 96311.8359375 0.3025138514901953 10 -0.2884063720703125 5 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 28.486842064014134 0.3788298654084067 1 {I|L}N{I|L} 3 -1 35.005 0 0 3.7025 0 0 587.2276942024969 0 587.2276942024969 0 13.093859345357188 0 0 0 0.5 0 0 0.3807196863200844 {I|L}N{I|L} 3.7025 - 30 NaN NaN 107586.7 NaN 13191 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16553 70.485 NaN 301890 35 0 27405 0.261 -1 MVLTEEPLL 9 70 530.7835099967838 1059.5524670603675 2 531.296630859375 MULTI HCD FTMS 0 0 0 16547 8100.6474609375 0.41299280944900457 -2 0.05896759033203125 6 Oxidation (M) _M(Oxidation (M))VLTEEPLL_ ENSG00000118217|ENST00000367942|ATF6 25.399314129420986 0.14091189997036632 1 EP{I|L}{I|L} 4 -1 34.157 0 0 3.2237 0 0 589.2790496268177 0 589.2790496268177 0 11.480625354554377 0 0 0 1 0 0 0 EP{I|L}{I|L} 3.2237 + + 149 NaN NaN 126801.7 NaN 13192 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16554 70.488 NaN 244660 35 0 25071 0.261 + 35254 YVRDNCHPFK 10 70 639.8050590520436 1277.595565170887 2 640.7869262695312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YVRDNCHPFK_ ENSG00000163626|ENST00000507544|COX18;ENST00000449739.6_1_4:73923833-73935428:-|nuORF;nc|ENSG00000163626|Q8N8Q8|COX18 3.944395688203298 0.4544253912184634 1 [YV][WH]WDMP 8 7 31.348 0 0 2.4537 0 0 0 160.0950358361437 160.0950358361437 17.904849854573683 0 0 0 0 0 1.6989700043360187 0 0 [YV][WH]WDMP 2.4537 - 185 NaN NaN 130980.7 NaN 13193 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16555 70.492 NaN 270460 35 0 14499 0.261 + -1 LYAADSFSCLL 11 77 630.3022412524738 1258.5899295717475 2 630.804443359375 MULTI HCD FTMS 0 0 0 16547 44863.79296875 0.3088592405327991 4 -0.10479736328125 8 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 27.628801355627647 0.21662447369784368 1 YYV{[MS]|[{M(Oxidation (M))|F}A]}C{I|L}{I|L} 8 -1 39.88 0 0 3.1686 0 0 268.15336806465 0 268.15336806465 0 5.825141431248575 0 0 0 0.3494850021680094 0 0.8494850021680094 0 YYV{[MS]|[{M(Oxidation (M))|F}A]}C{I|L}{I|L} 3.1686 - 1051 NaN NaN 134824.6 NaN 13194 3359 16547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16557 70.496 NaN 850030 35 0 266620 0.327 + 15986 LPQPSSIVL 9 67 477.28690468101496 952.5592564288299 2 477.2868957519531 MULTI HCD FTMS 0 0 0 16556 626236.5625 1 0 0 1 Unmodified _LPQPSSIVL_ ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF 51.629811660486645 0.02929079705179888 1 PSS{I|L}V{I|L} 6 3 56.776 0 0 5.9604 0 0 338.1948154118515 0 338.1948154118515 0 37.31196758040872 0 0 0 1.9247425010840047 0 0.6382104921644451 0 + PSS{I|L}V{I|L} 5.9604 + + 120 NaN NaN 218209.8 NaN 13195 3360 16556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16558 70.501 NaN 808200 35 0 112900 0.261 + 26211 SPSYPEISF 9 66 513.7421767329118 1025.4698005326236 2 513.7427368164062 MULTI HCD FTMS 0 0 0 16556 543600.9375 1 0 0 2 Unmodified _SPSYPEISF_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF 85.27202061508552 0.004649858145912257 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PE{I|L}S{M(Oxidation (M))|F} 9 3 + 77.898 0 0 7.5963 7.5963 95.088 0 0 0 15.404849854573683 64.63660567114374 15.404849854573683 36.210823758143285 0 2.3494850021680094 1.3979400086720375 1.1549471895720984 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PE{I|L}S{M(Oxidation (M))|F};[VP][YG]DE{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR][YG]S{M(Oxidation (M))|F};[NS][HN][HA]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PHH{[DS]|[MA]|[CV]|TT};[NS][RH]P{[CP]|[EA]}{[ES]|[DT]|[{I|L}C]} 7.5963;4.0651;4.0359;3.374;1.3335;0.35835 -;-;-;-;-;- 292 NaN NaN 201071.5 NaN 13196 3360 16556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16559 70.504 NaN 961860 35 0 77792 0.261 + 9172 HPKAPPSYRES 11 82 634.8248453484592 NaN 0 634.8104248046875 PEAK HCD FTMS 0 0 0 16556 35317.87890625 1 0 0 3 Unmodified _HPKAPPSYRES_ TMEM252|p.E142K|1|0.34|ENSG00000181778|chr9:68537348-68537348|C/T|missense_variant 15.248480904072842 0.2934134091661347 1 C(Carbamidomethyl (C))VYW{I|L}H 6 10 33.761 0 0 2.6633 0 0 131.12265093347997 275.1066988580688 406.22934979154877 0 0 0 0 0 0.3494850021680094 0 0 0 C(Carbamidomethyl (C))VYW{I|L}H 2.6633 - 661 + NaN NaN 231405.5 NaN 13197 3360 16556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16560 70.508 NaN 423720 35 0 39125 0.262 + 7850 FYSNIQTVI 9 60 542.7878989672685 1083.5612450013368 2 542.787841796875 MULTI HCD FTMS 0 0 0 16556 354425.6875 1 0 0 4 Unmodified _FYSNIQTVI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 41.95555342248728 0.056367691549927025 1 {I|L}QTV{I|L} 5 4 46.704 0 0 4.3103 0 0 511.205370017775 0 511.205370017775 0 33.209522437012886 0 0 0 1 0 0.4247425010840047 0.3494850021680094 + {I|L}QTV{I|L} 4.3103 + + 78 NaN NaN 144285.1 NaN 13198 3360 16556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16561 70.511 NaN 192780 35 0 13158 0.261 + -1 LYAADSFSCLL 11 71 630.3022412524738 1258.5899295717475 2 630.3026733398438 MULTI HCD FTMS 0 0 0 16556 47409.06640625 0.15798317199075818 8 -0.22928619384765625 5 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 21.536976647645854 0.2694300281126922 1 [YN]AVV{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}C{I|L} 10 -1 45.014 0 0 3.5765 0 0 0 128.0737696463997 128.0737696463997 19.02102327181167 0 0 0 0 0 1.6989700043360187 1.1747425010840047 0.28872548999643577 [YN]AVV{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}C{I|L} 3.5765 - 454 NaN NaN 107682.2 NaN 13199 3360 16556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16562 70.514 NaN 203230 35 0 10067 0.261 + 29365 TYQDIFRDF 9 59 602.785527629146 1203.556502325092 2 603.3017578125 MULTI HCD FTMS 0 0 0 16556 29341.908203125 0.17000413132348918 8 -0.22928619384765625 6 Unmodified _TYQDIFRDF_ ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF 35.079672537005266 0.08793183672117794 1 [YT]QD{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 9 0 + 68.522 0 0 5.6933 5.6933 87.45 0 0 0 49.05841552005654 7.147642715192504 7.147642715192504 9.208187539523749 0 2.2658715643802765 2 0 0 + + [YT]QD{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT][AG]D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT][YK][DP]RD{M(Oxidation (M))|F};[YT]QQQ{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YT]QQQ{M(Oxidation (M))|F}YN{I|L};[YT][TA][PS]{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT][TA]{M(Oxidation (M))|F}[PS]RD{M(Oxidation (M))|F};[YT][AG]QQ{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YT][YR][DP]KD{M(Oxidation (M))|F};[YT][AG]QQ{M(Oxidation (M))|F}YN{I|L} 5.6933;4.9282;3.4332;3.3162;3.1466;3.1175;2.8202;2.5511;2.4238;2.3815 +;-;-;-;-;-;-;-;-;- + 312 + NaN NaN 115718.6 NaN 13200 3360 16556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16564 70.519 NaN 863580 35 0 83346 0.327 + 6460 FPIIRDQIF 9 114 574.8272614073752 1147.6399698815503 2 574.826416015625 MULTI HCD FTMS 0 0 0 16563 147195.765625 0.5644046275944454 1 -0.02616119384765625 1 Unmodified _FPIIRDQIF_ ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 79.59630418116434 0.005983006570063981 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RDQ{I|L}{M(Oxidation (M))|F} 9 0 + 84.291 0 0 7.3447 7.3447 86.068 0 0 0 25.642492736872605 53.87137441844361 25.642492736872605 1.2371250542002343 0 2.1549471895720984 2 0 0.5451140161145328 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RDQ{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RDQ{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RD[AG]{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RD[AG]{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}R{M(Oxidation (M))|F}KD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}R{M(Oxidation (M))|F}KVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[WN]|[YH]}[{I|L}V]{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}[VG]{M(Oxidation (M))|F}KD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[WN]|[YH]}[{I|L}V]{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}[MN]{[MG]|[TS]}{I|L}{I|L} 7.3447;7.2369;6.5424;6.4346;5.0825;4.6618;4.3349;4.2801;4.2271;4.1945 +;-;-;-;-;-;-;-;-;- + 1302 NaN NaN 209998.2 NaN 13201 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16565 70.524 NaN 224550 35 0 8364.9 0.261 + 4454 EYIIEYPHF 9 82 605.792543883473 1209.5705348337458 2 605.7930297851562 MULTI HCD FTMS 0 0 0 16563 50940.8046875 0.1417881870616322 10 -0.278350830078125 2 Unmodified _EYIIEYPHF_ ENSG00000112992|ENST00000344920|NNT 16.942295170755138 0.21397866736869717 1 [YT]YK{I|L} 5 7 23.288 0 0 1.9253 0 0 0 538.186781742202 538.186781742202 5.865291151864085 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 [YT]YK{I|L} 1.9253 - 1605 NaN NaN 109332.5 NaN 13202 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16566 70.527 NaN 239850 35 0 11216 0.261 + -1 LYAADSFSCLL 11 65 630.3022412524738 1258.5899295717475 2 630.7877807617188 MULTI HCD FTMS 0 0 0 16563 22577.28515625 0.15543053061761894 6 -0.1737060546875 3 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 21.536976647645854 0.2694300281126922 1 YYV{[MS]|[{M(Oxidation (M))|F}A]}C{I|L}{I|L} 8 -1 41.165 0 0 3.2707 0 0 268.15437514472814 0 268.15437514472814 0 6.243434768119016 0 0 0 0.3252574989159953 0 0.8807196863200843 0 YYV{[MS]|[{M(Oxidation (M))|F}A]}C{I|L}{I|L} 3.2707 - 848 NaN NaN 126205.9 NaN 13203 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16567 70.531 NaN 104330 35 0 10344 0.264 + 22474 QRCRAAVQ 8 35 466.24756926530034 930.4805855974007 2 466.2479553222656 MULTI HCD FTMS 0 0 0 16563 74819.921875 0.83637328415732 1 -0.02616119384765625 4 Unmodified _QRCRAAVQ_ ENST00000356554.7_1_1:118067591-118067774:+|nuORF 28.486842064014134 0.3788298654084067 1 NAA[{I|L}P][WE] 7 8 44.041 0 0 4.7331 0 0 131.0888386457047 0 131.0888386457047 0 29.775844697417853 0 0 0 2.3494850021680094 0 0 0.805462187404089 NAA[{I|L}P][WE] 4.7331 - 44 NaN NaN 98862.6 NaN 13204 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16568 70.534 NaN 215780 35 0 77603 0.261 + -1 NRIRITMYF 9 45 410.55343159526205 1228.6384653859861 3 410.5537414550781 MULTI HCD FTMS 0 0 0 16563 48535.59375 0.06956153817834233 23 -0.6518020629882812 5 Oxidation (M) _NRIRITM(Oxidation (M))YF_ REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1 4.189502756095605 0.319257502753388 1 Y{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5206 0 0 900.4961752021956 0 900.4961752021956 0 26.365006360318688 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F} 2.5206 + + 10 + NaN NaN 108734.7 NaN 13205 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16569 70.537 NaN 118060 35 0 7615.2 0.261 -1 MLGIGDIVM 9 56 482.7451744359102 963.4757959386204 2 482.74560546875 MULTI HCD FTMS 0 0 0 16563 32190.291015625 0.22801819836970055 12 -0.32744598388671875 6 Oxidation (M) _MLGIGDIVM(Oxidation (M))_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;nc|ENSG00000157837|Q8TCT6-3|SPPL3 23.1484247019978 0.1603590852062899 1 VVE[QP]D{I|L} 7 -1 41.771 0 0 4.3354 0 0 165.04602248359532 0 165.04602248359532 0 19.374854021094947 0 0 0 1.305462187404089 0 0 0 VVE[QP]D{I|L} 4.3354 - 144 NaN NaN 97550 NaN 13206 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16570 70.541 NaN 149110 35 0 6211.6 0.261 -1 SFGESMCEYF 10 53 636.7313404079515 1271.448127882703 2 636.73193359375 MULTI HCD FTMS 0 0 0 16563 8763.6220703125 0.16948528684084127 -2 0.0557708740234375 7 Carbamidomethyl (C),Oxidation (M) _SFGESM(Oxidation (M))C(Carbamidomethyl (C))EYF_ ENSG00000185220|ENST00000329291|PGBD2;nc|ENSG00000185220|Q6P3X8-2|PGBD2 3.2813086475875832 0.45793521633868084 1 Q{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4125 0 0 978.3135714994924 0 978.3135714994924 0 9.006375246153906 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.4125 - 31 NaN NaN 114405.3 NaN 13207 3361 16563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16572 70.545 NaN 6436900 35 0 1755700 0.327 + 12804 KYEELFPAF 9 75 572.2896840640939 1142.5648151949877 2 572.2902221679688 MULTI HCD FTMS 0 0 0 16571 3954715.5 0.5157513714365602 2 -0.05570220947265625 1 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 118.0683919894846 0.0016252157255221692 1 [YK]EE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 9 0 + 103.4 0 0 9.0494 9.0494 91.163 0 0 0 4.137342758552691 73.04113429432412 4.137342758552691 6.677805497702991 0 3.274227503252014 0 1.9049471895720984 0 + + [YK]EE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YE]KE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};KYEE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L}E[VS]{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L}{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AS{M(Oxidation (M))|F}{I|L}E[VS]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AS{M(Oxidation (M))|F}{I|L}{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};[YK]ENK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}SE{I|L}[YV]A{M(Oxidation (M))|F};[YE]KNK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 9.0494;8.465;8.3685;5.0697;4.9156;4.6521;4.498;4.3673;3.8601;3.7829 +;-;+;-;-;-;-;-;-;- + 1479 NaN NaN 600538.1 NaN 13208 3362 16571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16573 70.55 NaN 1545700 35 0 477530 0.261 + 24583 RYLPDTLLL 9 83 552.3265013397413 1102.6384497462825 2 552.3267822265625 MULTI HCD FTMS 0 0 0 16571 752228.9375 0.08266113080736115 10 -0.27178192138671875 2 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 51.629811660486645 0.02929079705179888 1 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L} 9 2 + 66.647 0 0 6.0443 6.0443 90.454 0 0 0 16.020599913279625 16.478174818886373 16.020599913279625 16.020599913279625 0 1.7059771852360797 1.5228787452803376 0.8494850021680094 0 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L};[YR]{I|L}[DP]T{I|L}{I|L}{I|L} 6.0443;4.5914 -;+ + 344 NaN NaN 328309.5 NaN 13209 3362 16571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16574 70.553 NaN 562060 35 0 65618 0.261 + 10182 IFTDVALKF 9 77 527.3025213913324 1052.5904898494648 2 527.3026123046875 MULTI HCD FTMS 0 0 0 16571 306245.34375 0.697444332954454 2 -0.05570220947265625 3 Unmodified _IFTDVALKF_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 163.03601447609117 7.615514112917802E-09 1 {I|L}{M(Oxidation (M))|F}TDVA{I|L}K{M(Oxidation (M))|F} 9 0 + 124.4 0 0 11.819 11.819 97.981 0 0 0 83.96479615848263 16.478174818886373 16.478174818886373 26.17570457547339 0 3.079689690656103 1.3979400086720375 0.7742275032520141 0.930884548956689 + + {I|L}{M(Oxidation (M))|F}TDVA{I|L}K{M(Oxidation (M))|F};{I|L}Y{[CP]|[EA]}VA{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TDVA{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}VA{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDA{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TDVAK{I|L}{M(Oxidation (M))|F};[Y{I|L}]V{[CP]|[EA]}A{I|L}K{M(Oxidation (M))|F};[Y{I|L}][{I|L}A]DA{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}VAK{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDAK{I|L}{M(Oxidation (M))|F} 11.819;9.3317;8.6317;7.7828;7.5319;7.4672;7.1363;6.683;6.6183;6.3674 +;-;+;-;-;-;-;-;-;- + 726 + NaN NaN 173877.3 NaN 13210 3362 16571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16575 70.557 NaN 426060 35 0 20730 0.261 + 7337 FVCPICFDMI 10 91 594.268495335413 1186.522437737626 2 594.268310546875 MULTI HCD FTMS 0 0 0 16571 147898.71875 0.4748289229583198 13 -0.35355377197265625 4 Unmodified _FVCPICFDMI_ ENSG00000143207|ENST00000367669|COP1;nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;nc|ENSG00000143207|Q8NHY2-5|COP1 25.399314129420986 0.2735354021946395 1 {I|L}WT{M(Oxidation (M))|F} 4 8 38.443 0 0 3.24 0 0 621.2330189435562 0 621.2330189435562 0 13.011525224473814 0 0 0 1 0 0 0 {I|L}WT{M(Oxidation (M))|F} 3.24 - 517 NaN NaN 146302.1 NaN 13211 3362 16571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16576 70.56 NaN 92053 35 0 9598.4 0.262 + -1 DPFNEVVM 8 44 483.7158656783491 965.4171784234982 2 483.7156066894531 MULTI HCD FTMS 0 0 0 16571 28297.67578125 0.1429084196796133 14 -0.383087158203125 5 Oxidation (M) _DPFNEVVM(Oxidation (M))_ REV__ENSG00000134775|ENST00000590592|FHOD3;REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3;REV__nc|ENSG00000134775|Q2V2M9-3|FHOD3;REV__nc|ENSG00000134775|Q2V2M9|FHOD3 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F}N{I|L} 3 -1 24.693 0 0 2.5577 0 0 573.21098525215 0 573.21098525215 0 15.194701113908359 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N{I|L} 2.5577 - 25 NaN NaN 119497 NaN 13212 3362 16571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16577 70.563 NaN 135170 35 0 8653.7 0.261 -1 DCPNKKAIY 9 61 554.7769775390625 NaN 0 554.7769775390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _DC(Carbamidomethyl (C))PNKKAIY_ ENSG00000158125|ENST00000379416|XDH 4.3292370932331545 0.2742679634796037 1 DV 2 -1 9.464 0 0 0.8545 0 0 130.08029286933748 760.3351534479124 890.4154463172499 0 0 0 0 0 0 0 0 0 DV 0.8545 - 7 + NaN NaN 108283.7 NaN 13213 3362 16571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16579 70.568 NaN 1841800 35 0 207880 0.327 + 19745 NYAWVYYHL 9 94 614.7929287250602 1227.5713045169202 2 614.7927856445312 MULTI HCD FTMS 0 0 0 16578 990567.75 0.017653973107343714 52 -1.4606475830078125 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 1 [YN]AWVYYH{I|L} 9 0 + 122.8 0 0 10.004 10.004 96.235 0 0 0 33.46787486224656 97.09814117179789 33.46787486224656 15.919941963236482 0 2.8494850021680094 1.6989700043360187 0 2.5713337517843655 + + [YN]AWVYYH{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]AV{M(Oxidation (M))|F}VC{NN|[MP]|[D{I|L}]|[EV]}[KG];{[WN]|[YH]}YAVYYH{I|L};[YN]AVWW[YN]{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};[YN]ADAV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10.004;8.7068;8.6523;7.1535;6.9436;5.8624;5.8566;5.8021;5.719;5.5378 +;-;-;-;-;-;-;-;-;- + 2518 NaN NaN 367120.4 NaN 13214 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16580 70.573 NaN 1223600 35 0 137950 0.261 + 29420 TYTDRVFFL 9 95 581.3005047013379 1160.5864564694757 2 581.3007202148438 MULTI HCD FTMS 0 0 0 16578 657131.125 0.1307662347366606 11 -0.31121063232421875 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 89.40071534611396 0.0045416704840156395 1 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 93.439 0 0 8.051 8.051 92.625 0 0 0 24.053783369835315 77.19991547036201 24.053783369835315 10.440680443502757 0 2.742992819099939 1.6989700043360187 1.4916440611282626 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};{[{M(Oxidation (M))|F}C]|[YS]}KK[DN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}KK[DN]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]V{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]V{I|L}{M(Oxidation (M))|F} 8.051;7.1514;6.881;5.9814;5.6034;2.6334;1.7338;1.1138;0.21421 +;-;-;-;-;-;-;-;- + 1970 NaN NaN 285055.8 NaN 13215 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16581 70.576 NaN 193840 35 0 50740 0.261 -1 FPANVMDVI 9 46 511.25409607697145 1020.4936392207429 2 511.2550354003906 MULTI HCD FTMS 0 0 0 16578 128635.953125 0.22981606788934483 11 -0.31121063232421875 3 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 9.38312468134398 0.279288223203164 1 DV{I|L} 3 -1 23.188 0 0 2.2722 0 0 675.3024769513687 0 675.3024769513687 0 8.58349385648225 0 0 0 0 0 0 0 DV{I|L} 2.2722 + + 17 NaN NaN 110622.8 NaN 13216 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16582 70.58 NaN 192500 35 0 23878 0.261 + -1 PFEEACQCR 9 73 598.7454926658418 1195.4764323984834 2 598.7451171875 MULTI HCD FTMS 0 0 0 16578 32981.4375 0.1783359093381484 3 -0.0917816162109375 4 2 Carbamidomethyl (C) _PFEEAC(Carbamidomethyl (C))QC(Carbamidomethyl (C))R_ REV__BRINP1|p.E573Rfs*90|1|0.44|ENSG00000078725|chr9:119167653-119167653|C/-|frameshift_variant;REV__ENSG00000078725|ENST00000265922|BRINP1;REV__nc|ENSG00000078725|O60477-2|BRINP1 3.5964929083625545 0.32375295897743744 1 T{I|L}[RV]CQ[Q{I|L}] 8 -1 23.887 0 0 1.9982 0 0 235.97011569539035 0 235.97011569539035 0 11.54483214958229 0 0 0 0 0 0 0.3252574989159953 T{I|L}[RV]CQ[Q{I|L}] 1.9982 - 138 + NaN NaN 129051.7 NaN 13217 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16583 70.583 NaN 309540 35 0 69608 0.262 + 15062 LLTSTFVKP 9 58 503.3036873900452 1004.5928218468904 2 503.3060607910156 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LLTSTFVKP_ REV__ENST00000312858.9_3_14:76644237-76662256:+|nuORF 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5414 0 0 839.5136420146623 0 839.5136420146623 0 3.5463498048791564 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5414 + + 11 + NaN NaN 133370.4 NaN 13218 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16584 70.586 NaN 85680 35 0 7840.9 0.261 -1 LMTPSGECR 9 47 533.7347337134771 1065.4549144937541 2 533.7335205078125 MULTI HCD FTMS 0 0 0 16578 21770.09375 0.21087183659743 8 -0.2293243408203125 6 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))TPSGEC(Carbamidomethyl (C))R_ ENSG00000254585|ENST00000650528|MAGEL2;ENST00000314233.2_15:23890641-23890966:-|nuORF 6.2057823575117 0.30397260197431997 1 YC(Carbamidomethyl (C))R 3 -1 22.307 0 0 2.0937 0 0 568.2515736310562 0 568.2515736310562 0 6.822581265925436 0 0 0 0 0 0 0 YC(Carbamidomethyl (C))R 2.0937 - 21 NaN NaN 103409.4 NaN 13219 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16585 70.59 NaN 158220 35 0 10643 0.261 + 5489 FIYFSEEI 8 65 524.2550036117516 1046.495454290303 2 524.2543334960938 MULTI HCD FTMS 0 0 0 16578 33305.40234375 0.5321235718443147 4 -0.1246795654296875 7 Unmodified _FIYFSEEI_ REV__ENSG00000163933|ENST00000296292|RFT1;REV__ENST00000471158.1_1_3:53137921-53154019:-|nuORF 10.183394434864962 0.5188676124868831 1 D{I|L} 2 -1 24.464 0 0 2.3377 0 0 800.378221580275 0 800.378221580275 0 4.286662482156345 0 0 0 0.5 0 0 0 D{I|L} 2.3377 - 96 NaN NaN 103068.5 NaN 13220 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16586 70.593 NaN 160780 35 0 16947 0.261 + 734 ARGSLKTF 8 53 440.2551733150006 878.4957936968012 2 440.2557678222656 MULTI HCD FTMS 0 0 0 16578 21553.66015625 0.48660674127972914 -4 0.10479736328125 8 Unmodified _ARGSLKTF_ ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.6624 0 0 713.4167664524638 0 713.4167664524638 0 7.525749891599531 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.6624 + + 27 + NaN NaN 102061.6 NaN 13221 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16587 70.596 NaN 263890 35 0 54291 0.261 + 8127 GLSPIDPCGI 10 55 486.24694600107915 970.4793390689583 2 486.2472229003906 MULTI HCD FTMS 0 0 0 16578 28726.0859375 0.20056347434719515 25 -0.7169265747070312 9 Unmodified _GLSPIDPCGI_ REV__ENSG00000283992|ENST00000317543|SLURP2;REV__nc|ENSG00000180155|P0DP58-2|LYNX1 19.256988751693697 0.33098864134661865 1 VG{I|L} 3 -1 29.425 0 0 3.032 0 0 683.2955799787125 0 683.2955799787125 0 14.093793813122062 0 0 0 0.7742275032520141 0 0 0 VG{I|L} 3.032 - 100 NaN NaN 132915.9 NaN 13222 3363 16578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16589 70.601 NaN 2251200 35 0 267180 0.327 + 24125 RYAVEILTW 9 126 575.8162440995874 1149.6179352659747 2 575.8164672851562 MULTI HCD FTMS 0 0 0 16588 1224085.375 0.5458673278157309 -4 0.10467529296875 1 Unmodified _RYAVEILTW_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 96.36657018975838 0.004359138328518304 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RVE{I|L}{I|L}TW 9 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R + + 80.583 -1.0476 -0.26847 7.0096 7.0096 65.135 0 0 0 0 53.79102036189344 0 0 0 2.8807196863200843 0 1.8411290632962718 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RVE{I|L}{I|L}TW 7.0096 - 4420 + NaN NaN 438038.6 NaN 13223 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16590 70.606 NaN 1308200 35 0 98374 0.261 + 13091 KYLELCVDL 9 109 548.2916503143242 1094.5687476954483 2 548.7932739257812 MULTI HCD FTMS 0 0 0 16588 544396.5625 0.7324100735273591 4 -0.12461090087890625 2 Unmodified _KYLELCVDL_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 83.42873516780209 0.004742894019233849 1 [YK]{I|L}E{I|L}CVD{I|L} 9 0 + 68.13 0 0 6.2244 6.2244 90.551 0 0 0 1.5398434942549954 15.855866849619872 1.5398434942549954 14.776296993281406 0 2.305462187404089 0 0.8754223615525999 0 + + [YK]{I|L}E{I|L}CVD{I|L};{[QN]|[E{I|L}]|[KN]}[YK]{I|L}CVD{I|L};{NN|[MP]|[D{I|L}]|[EV]}VM[YK]VD{I|L};[{M(Oxidation (M))|F}T]{[TV]|[{I|L}S]}VVCVD{I|L};{[QN]|[E{I|L}]|[KN]}C{I|L}[YK]VD{I|L};[DV]M{I|L}[YK]VD{I|L};[DV]{I|L}M[YK]VD{I|L};{NN|[MP]|[D{I|L}]|[EV]}VM[YV]KD{I|L};{I|L}{I|L}[EC][YK]VD{I|L};{[QN]|[E{I|L}]|[KN]}C{I|L}[YV]KD{I|L} 6.2244;4.8744;3.6187;3.4819;2.6054;2.4912;2.4027;2.3532;1.7401;1.3399 +;-;-;-;-;-;-;-;-;- + 3518 NaN NaN 291306.3 NaN 13224 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16591 70.609 NaN 344890 35 0 43312 0.261 + 21088 PNELVDLTL 9 57 507.2792668441966 1012.5439807551933 2 507.2794189453125 MULTI HCD FTMS 0 0 0 16588 143945.65625 0.27445433692526794 9 -0.24558258056640625 3 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 24.990960013464015 0.14443998892849796 1 D{I|L}T{I|L} 4 -1 50.745 0 0 5.0117 0 0 552.2903897960972 0 552.2903897960972 0 38.09385934535719 0 0 0 1.5 0 0.3807196863200844 0 D{I|L}T{I|L} 5.0117 + + 71 NaN NaN 138247.5 NaN 13225 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16592 70.612 NaN 363110 35 0 18836 0.261 + 2909 DYSPYFKTI 9 72 567.2791460627044 1132.5437391922087 2 567.279541015625 MULTI HCD FTMS 0 0 0 16588 103071.7734375 0.004180369071426503 280 -6.9697418212890625 4 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 29.84058131909904 0.11198220037953927 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 30.234 0 0 2.6696 0 0 0 764.3981757979305 764.3981757979305 6.690840781556204 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 2.6696 + + 363 NaN NaN 141663.4 NaN 13226 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16593 70.616 NaN 306510 35 0 15587 0.261 -1 GMLDQGTRFF 10 55 594.2814817374664 NaN 0 594.2687377929688 PEAK HCD FTMS 0 0 0 16588 29590.69140625 0.9947271777877152 1 -0.03607940673828125 5 Oxidation (M) _GM(Oxidation (M))LDQGTRFF_ ENST00000215071.8_1_19:38874132-38874405:+|nuORF 9.38312468134398 0.33215363477037435 1 TW 2 -1 10.969 0 0 0.92445 0 0 165.10273256277816 731.2956927069658 896.3984252697439 0 0 0 0 0 0 0 0 0 TW 0.92445 - 12 + NaN NaN 130683.4 NaN 13227 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16594 70.619 NaN 344340 35 0 42856 0.261 -1 0 67 558.0213883390526 3899.098783107168 7 558.2979125976562 MULTI HCD FTMS 0 0 0 16588 13390.375 0.6028792771504312 -2 0.05570220947265625 6 NaN NaN 1 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 17.932 0 0 0.4599 0 0 3489.930125735877 0 3489.930125735877 0 7.447274948966939 0 0 0 0 0 0 0 P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.4599 - 100 + NaN NaN 147454.5 NaN 13228 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16595 70.622 NaN 224350 35 0 15429 0.261 + -1 FVNAKGSITAM 11 69 598.8022073522872 1195.5898617713742 2 598.8023681640625 MULTI HCD FTMS 0 0 0 16588 44111.38671875 0.31367891588266256 -4 0.10467529296875 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))FVNAKGSITAM(Oxidation (M))_ REV__ENST00000489828.5_1_7:104937893-104937950:-|nuORF 14.405379775768559 0.3315678654765638 1 {I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 28.94 0 0 2.4206 0 0 745.3770988258605 0 745.3770988258605 0 20.379011768134134 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 2.4206 + + 253 NaN NaN 111626.2 NaN 13229 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16596 70.626 NaN 260160 35 0 15224 0.261 + 6613 FPLQFGREVL 10 72 603.3371534618441 1204.659753990488 2 603.3375244140625 MULTI HCD FTMS 0 0 0 16588 59374.46484375 0.6851950641708993 -1 0.0328369140625 8 Unmodified _FPLQFGREVL_ ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1 23.80106514851385 0.2884848839100546 1 V{M(Oxidation (M))|F}Q{I|L}PE 6 8 28.453 0 0 2.3619 0 0 473.24730117011876 0 473.24730117011876 0 3.2141104898141037 0 0 0 0.6549471895720984 0 0 0 V{M(Oxidation (M))|F}Q{I|L}PE 2.3619 - 671 NaN NaN 121992.2 NaN 13230 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16597 70.629 NaN 105030 35 0 5700.9 0.261 + 30116 VFYVEYVE 8 54 524.2550036117516 1046.495454290303 2 524.2548217773438 MULTI HCD FTMS 0 0 0 16588 20123.240234375 0.32151091766066875 5 -0.1507720947265625 9 Unmodified _VFYVEYVE_ REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;REV__ENSG00000105877|ENST00000409508|DNAH11 9.347437153973935 0.5250182646323369 1 D{I|L} 2 -1 23.711 0 0 2.2658 0 0 800.375780174025 0 800.375780174025 0 3.5340874929963917 0 0 0 0.4247425010840047 0 0 0 D{I|L} 2.2658 - 36 NaN NaN 119175.4 NaN 13231 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16598 70.632 NaN 97254 35 0 8464.1 0.261 + -1 LCEETVCR 8 53 533.7347337134771 1065.4549144937541 2 533.7349853515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))EETVC(Carbamidomethyl (C))R_ REV__ENSG00000260458|ENST00000567955|KCNJ18 5.230669730166228 0.5342319408533849 1 C(Carbamidomethyl (C))R 2 -1 17.959 0 0 1.6856 0 0 731.313280174025 0 731.313280174025 0 3.3547064036788754 0 0 0 0 0 0 0 C(Carbamidomethyl (C))R 1.6856 + + 7 NaN NaN 109084.6 NaN 13232 3364 16588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16600 70.637 NaN 545230 35 0 50220 0.327 + 6049 FPDWREDVL 9 93 588.7877329764015 1175.5609130196028 2 588.7879638671875 MULTI HCD FTMS 0 0 0 16599 221916.625 0.5282656913090855 5 -0.140838623046875 1 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 38.61474834105838 0.07170385841135779 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[PG][YR]VPE 10 6 + 44.696 0 0 3.8021 3.8021 86.398 0 0 0 6.094078604667459 17.261131849867084 6.094078604667459 13.094632317327633 0 0.5 2 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[PG][YR]VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWR{[QD]|[EN]|[WG]|[KD]|[RS]}{[NV]|[RG]};[DP]{M(Oxidation (M))|F}[PG][YR]VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N{I|L};{M(Oxidation (M))|F}PDW[DN][VG]{[QV]|[N{I|L}]|[RA]|[KV]};[DP]{M(Oxidation (M))|F}WR{[QD]|[EN]|[WG]|[KD]|[RS]}{[NV]|[RG]} 3.8021;2.6882;2.2359;1.856;1.5247;0.43686 -;-;-;-;-;- 846 NaN NaN 173297.8 NaN 13233 3365 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16601 70.642 NaN 210660 35 0 10924 0.261 + 5844 FPDEFHLQTL 10 61 623.8086092601616 1245.602665587123 2 623.8092041015625 MULTI HCD FTMS 0 0 0 16599 127329.6640625 0.2722527609650988 11 -0.2913055419921875 2 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 61.08992128646608 0.03745793995309655 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L} 10 0 + 54.275 0 0 4.3573 4.3573 84.491 0 0 0 4.884381005764311 37.82129046585631 4.884381005764311 9.164539485499255 0 1.6421590589602533 0 0.5 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[AG]T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}[KT]PE 4.3573;3.6216;1.7184 +;-;- + 199 NaN NaN 124126.2 NaN 13234 3365 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16602 70.645 NaN 431720 35 0 65006 0.261 + 16767 LYDLDLGKF 9 82 542.2898259904644 NaN 0 542.2899780273438 PEAK HCD FTMS 0 0 0 16599 121155.1640625 0.7105248978714392 -1 0.03607940673828125 3 Unmodified _LYDLDLGKF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 80.6760300276096 0.0027682388075221274 1 YD{I|L}D{I|L}GK 7 2 58.013 0 0 5.3588 0 0 113.08685845529108 162.05616174869377 275.14302020398486 0 0 0 0 0 2.610924374808178 0 0 0.7614393726401688 + YD{I|L}D{I|L}GK 5.3588 + + 886 + NaN NaN 154994.8 NaN 13235 3365 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16603 70.649 NaN 157140 35 0 16407 0.261 + 31817 VYMDWYEKF 9 48 640.7862258131424 1279.5578986930848 2 640.7870483398438 MULTI HCD FTMS 0 0 0 16599 64314.578125 0.0584635065425879 31 -0.8831100463867188 4 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 43.981846655682396 0.04706587046877104 1 VYMDW[YE]K{M(Oxidation (M))|F} 9 0 + 68.382 0 0 5.3442 5.3442 85.33 0 0 0 42.41312192373542 5.647124887093824 5.647124887093824 7.54554718523508 0 2.1549471895720984 1.6989700043360187 0 0 + + VYMDW[YE]K{M(Oxidation (M))|F};[YV]MDW[YE]K{M(Oxidation (M))|F} 5.3442;4.7545 +;+ + 103 + NaN NaN 117074.2 NaN 13236 3365 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16604 70.652 NaN 252280 35 0 15684 0.261 + 17430 LYRRHSFMS 9 87 598.8022073522872 1195.5898617713742 2 598.8006591796875 MULTI HCD FTMS 0 0 0 16599 92530.09375 0.6579874643044007 -3 0.0917816162109375 5 Unmodified _LYRRHSFMS_ ENSG00000108309|ENST00000426726|RUNDC3A;nc|ENSG00000108309|Q59EK9-2|RUNDC3A;nc|ENSG00000108309|Q59EK9-3|RUNDC3A 30.636539890814138 0.10832830463492794 1 {I|L}{I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 5 6 33.64 0 0 2.8137 0 0 632.2917347638687 0 632.2917347638687 0 4.237708414534037 0 0 0 1 0 0.3807196863200844 0 {I|L}{I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 2.8137 - 193 NaN NaN 131085.8 NaN 13237 3365 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16605 70.655 NaN 128210 35 0 34200 0.261 + 30211 VIEALLLPLF 10 53 564.3591518484426 NaN 0 564.3592529296875 PEAK HCD FTMS 0 0 0 16599 125343.0078125 0.17724397682867066 56 -1.5794143676757812 6 Unmodified _VIEALLLPLF_ REV__nc|ENSG00000102007|Q04941-2|PLP2 1.844237919475145 0.33860587697544825 1 S 1 -1 9.2917 0 0 0.82468 0 0 874.5926953211055 162.05585657291252 1036.648551894018 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.82468 - 8 + NaN NaN 120249.1 NaN 13238 3365 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16607 70.66 NaN 625030 35 0 53964 0.327 + 22960 QYVYWLHML 9 76 634.8103877121284 1267.6062224910568 2 634.8104858398438 MULTI HCD FTMS 0 0 0 16606 212921.734375 0.3625172745833802 6 -0.157135009765625 1 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 123.09622228370866 0.0010236603636890153 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L} 10 8 + 80.894 0 0 6.3817 6.3817 87.527 0 0 0 8.638312327228519 10.553396606206888 8.638312327228519 8.57840941039747 0 1.6976212463643423 1.5228787452803376 0.805462187404089 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVYC(Carbamidomethyl (C)){I|L};[YQ]VYW{I|L}H{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}VYC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVY[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV[CG]{I|L} 6.3817;5.7049;5.7002;5.6657;5.6587;5.3654;5.1188;4.989;4.982;4.9428 -;-;+;-;-;-;-;-;-;- + 1511 NaN NaN 179137.9 NaN 13239 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16608 70.664 NaN 180640 35 0 19164 0.263 + 26212 SPSYPEISF 9 54 513.7421767329118 1025.4698005326236 2 513.74267578125 MULTI HCD FTMS 0 0 0 16606 29725.8125 0.0546831516455948 6 -0.157135009765625 2 Unmodified _SPSYPEISF_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF 52.268347100219714 0.028397529699942435 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PE{I|L}S{M(Oxidation (M))|F} 9 3 + 62.24 0 0 6.0694 6.0694 93.235 0 0 0 10.016121490133543 53.828402799419166 10.016121490133543 62.239693432381884 0 2.1549471895720984 1.3010299956639813 0.6307196863200843 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PE{I|L}S{M(Oxidation (M))|F} 6.0694 - 64 NaN NaN 124196.1 NaN 13240 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16609 70.668 NaN 425310 35 0 54426 0.261 + 10298 ILDPHVVLL 9 83 509.8183259944046 1017.6220990556092 2 509.8183898925781 MULTI HCD FTMS 0 0 0 16606 152962.234375 0.7062051894081157 -2 0.0589447021484375 3 Unmodified _ILDPHVVLL_ ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF 57.47134341890925 0.0211188941628804 1 {I|L}{I|L}DP[HV]V{I|L}{I|L} 9 0 + 65.34 0 0 6.4208 6.4208 89.798 0 0 0 44.83796566865003 8.925449767853308 8.925449767853308 10.457574905606748 0 2.1989700043360187 1.5228787452803376 0.9247425010840047 0 + + {I|L}{I|L}DP[HV]V{I|L}{I|L};{I|L}{I|L}D[YR]{I|L}{I|L}{I|L};{I|L}{I|L}[YR]EV{I|L}{I|L};{I|L}{I|L}[YR]D{I|L}{I|L}{I|L};{I|L}{I|L}[YR]{I|L}D{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YR]{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[YR]{I|L}{I|L}{I|L};[{I|L}V]E[YR]{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{I|L}{I|L}{I|L} 6.4208;5.3932;4.7251;4.3102;4.1666;2.6407;2.5749;2.2791;2.0835 +;-;-;-;-;-;-;-;- + 434 + NaN NaN 143917 NaN 13241 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16610 70.671 NaN 120180 35 0 24593 0.261 + 22351 QPLSPLSVL 9 31 477.28690468101496 952.5592564288299 2 477.2870788574219 MULTI HCD FTMS 0 0 0 16606 46920.6796875 0.07492484868687302 6 -0.157135009765625 4 Unmodified _QPLSPLSVL_ REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__nc|ENSG00000140836|Q15911-2|ZFHX3 8.745405648335112 0.2847203663274469 1 V{I|L} 2 -1 24.464 0 0 2.5682 0 0 722.3968430292073 0 722.3968430292073 0 22.870156338638594 0 0 0 0.5 0 0 0 V{I|L} 2.5682 + + 9 NaN NaN 94487.7 NaN 13242 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16611 70.675 NaN 211230 35 0 9827.2 0.261 -1 YNAPTDHGLCI 11 72 630.7877655450172 1259.5609781568344 2 630.7882690429688 MULTI HCD FTMS 0 0 0 16606 63852.04296875 0.019285753152900775 54 -1.5295333862304688 5 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 17.11289562659939 0.30797719109864646 1 [YN]AWMY 6 -1 53.677 0 0 4.2616 0 0 0 428.1927889459594 428.1927889459594 39.649640954996954 0 0 0 0 1.579689690656103 1.6989700043360187 0 0 [YN]AWMY 4.2616 - 403 + NaN NaN 126663.8 NaN 13243 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16612 70.678 NaN 196310 35 0 57991 0.263 + 20847 PIAYDGEVL 9 41 488.75292295719345 975.4912929811869 2 488.7532043457031 MULTI HCD FTMS 0 0 0 16606 83796.7109375 0.4800379287097078 -4 0.11464691162109375 6 Unmodified _PIAYDGEVL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 10.823927491677226 0.26684000660059787 1 HWV{I|L} 4 7 37.735 0 0 3.8683 0 0 422.1979237287125 0 422.1979237287125 0 30.74539712336197 0 0 0 0.8807196863200843 0 0 0 HWV{I|L} 3.8683 - 15 NaN NaN 113846.9 NaN 13244 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16613 70.681 NaN 128320 35 0 11928 0.261 + 19040 NDVDVGVYQLM 11 47 626.7954613404672 1251.5763697477344 2 626.7931518554688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NDVDVGVYQLM_ ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENST00000523091.5_1_8:23112705-23118098:+|nuORF 5.783430956126388 0.39355650299313505 1 WY{M(Oxidation (M))|F} 3 9 27.435 0 0 2.192 0 0 737.3541737287125 0 737.3541737287125 0 6.465912507003608 0 0 0 0.4247425010840047 0 0 0 WY{M(Oxidation (M))|F} 2.192 - 25 NaN NaN 98398.5 NaN 13245 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16614 70.685 NaN 153910 35 0 16346 0.262 -1 MPEDLVEAL 9 48 516.7493651588878 1031.4841773845756 2 516.748779296875 MULTI HCD FTMS 0 0 0 16606 57436.5390625 0.871075370725667 -5 0.14080810546875 8 Oxidation (M) _M(Oxidation (M))PEDLVEAL_ ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;nc|ENSG00000133835|P51659-2|HSD17B4;nc|ENSG00000133835|P51659-3|HSD17B4 20.453626601364224 0.18364154288633264 1 VEA{I|L} 4 -1 37.251 0 0 3.6114 0 0 601.2421131818375 0 601.2421131818375 0 29.291746928241125 0 0 0 0.8807196863200843 0 0 0 VEA{I|L} 3.6114 + + 18 NaN NaN 109296.6 NaN 13246 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16615 70.688 NaN 370400 35 0 29162 0.261 -1 VPMEDINL 8 63 473.73104613587077 945.4475393385416 2 473.7309875488281 MULTI HCD FTMS 0 0 0 16606 48084.12890625 0.15103143751117135 17 -0.48809051513671875 9 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 28.486842064014134 0.3788298654084067 1 T{I|L}EM{I|L}N{I|L} 7 -1 32.102 0 0 3.3954 0 0 113.0038840384304 0 113.0038840384304 0 7.9203356740949005 0 0 0 1.0484550065040281 0 0.3252574989159953 0.805462187404089 T{I|L}EM{I|L}N{I|L} 3.3954 - 259 + NaN NaN 137034.8 NaN 13247 3366 16606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16617 70.693 NaN 2175900 35 0 589220 0.327 + 12805 KYEELFPAF 9 87 572.2896840640939 1142.5648151949877 2 572.2901611328125 MULTI HCD FTMS 0 0 0 16616 1164880.75 0.1519170833837602 7 -0.18653106689453125 1 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 69.10491478415734 0.009377850133389008 1 [VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F} 10 6 + 95.623 0 0 8.3691 8.3691 92.979 0 0 0 9.572034164243561 66.90659295050637 9.572034164243561 9.744237387763093 0 2 0 1.6237125054200234 0 [VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[YG]{I|L}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[HV]PSE{I|L}{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};[HV]P{M(Oxidation (M))|F}K[C(Carbamidomethyl (C))K]{NN|[MP]|[D{I|L}]|[EV]};[VS]{M(Oxidation (M))|F}[RN][R{M(Oxidation (M))|F}]A{M(Oxidation (M))|F};[RH][PA]{M(Oxidation (M))|F}NS{I|L}{[DS]|[MA]|[CV]|TT};[HV]PK{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K]{NN|[MP]|[D{I|L}]|[EV]};[RH][PA]{M(Oxidation (M))|F}GGS{I|L}{[DS]|[MA]|[CV]|TT};[PA]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{I|L}[YV]A{M(Oxidation (M))|F};[PA][RH]M{[QD]|[EN]|[WG]|[KD]|[RS]}AA{M(Oxidation (M))|F} 8.3691;7.5163;6.0069;4.0425;3.4424;3.2794;3.0829;2.4773;2.4154;2.3599 -;-;-;-;-;-;-;-;-;- 2030 NaN NaN 419749.4 NaN 13248 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16618 70.697 NaN 1570100 35 0 86756 0.261 + 609 APFKFDMEL 9 114 549.2704411230641 1096.526329312928 2 549.2708129882812 MULTI HCD FTMS 0 0 0 16616 546304.8125 0.8474349389903215 -1 0.03289794921875 2 Unmodified _APFKFDMEL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 93.16586880292088 0.00444300900000894 1 [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DME{I|L} 9 0 + 55.517 0 0 5.063 5.063 83.218 0 0 0 3.636343938057955 3.636343938057955 3.636343938057955 3.636343938057955 0 1.7786596949921218 0 0.566901560044258 0 + + [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DME{I|L};AP{M(Oxidation (M))|F}[YG]{I|L}GME{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DEM{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}DME{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DM{I|L}E;AP{M(Oxidation (M))|F}[YG]{I|L}CVD{I|L};APY{[CT]|[{M(Oxidation (M))|F}G]}{I|L}GME{I|L};{I|L}{M(Oxidation (M))|F}MT[VG]GEP{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}MT[VG][EP]G{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}MDG[TP]{I|L}G{M(Oxidation (M))|F} 5.063;4.7314;4.2558;4.1006;3.8725;3.6563;3.6288;3.5898;3.5393;3.4775 +;-;-;-;-;-;-;-;-;- + 11899 NaN NaN 316371.9 NaN 13249 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16619 70.701 NaN 1006500 35 0 86662 0.261 -1 VFRTDLITAM 10 116 591.8114347669983 NaN 0 591.8114624023438 PEAK HCD FTMS 0 0 0 16616 495100.59375 1 0 0 3 Oxidation (M) _VFRTDLITAM(Oxidation (M))_ ENSG00000043143|ENST00000681547|JADE2;ENSG00000077684|ENST00000226319|JADE1;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;nc|ENSG00000077684|Q6IE81-2|JADE1;nc|ENSG00000077684|Q6IE81-3|JADE1 29.84058131909904 0.2009219809393727 1 T{I|L}{I|L}EA{I|L}T 7 -1 51.961 0 0 4.3975 0 0 236.07995803047032 201.06514829091876 437.1451063213891 0 0 0 0 0 3.274227503252014 0 1.4049471895720984 0 T{I|L}{I|L}EA{I|L}T 4.3975 - 1192 NaN NaN 253890.4 NaN 13250 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16620 70.704 NaN 1245400 35 0 278280 0.261 + 24584 RYLPDTLLL 9 84 552.3265013397413 1102.6384497462825 2 552.32666015625 MULTI HCD FTMS 0 0 0 16616 436014.125 0.047912834542452196 15 -0.43235015869140625 4 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 43.77239144664712 0.04802738721622131 1 {I|L}{I|L}[HK]TDV{M(Oxidation (M))|F} 8 7 47.005 0 0 4.263 0 0 131.09439196614625 0 131.09439196614625 0 22.58024070117017 0 0 0 0.805462187404089 0 1.0356668758921828 0 {I|L}{I|L}[HK]TDV{M(Oxidation (M))|F} 4.263 - 1102 + NaN NaN 270549.9 NaN 13251 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16621 70.708 NaN 302900 35 0 64305 0.261 + 16165 LPVEDDIDL 9 59 514.760652469812 1027.506752006424 2 514.7611694335938 MULTI HCD FTMS 0 0 0 16616 105558.0703125 0.7514537502853108 -1 0.03289794921875 5 Unmodified _LPVEDDIDL_ ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6;nc|ENSG00000143870|Q15084-3|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6 14.838274106304384 0.23215694253501695 1 {I|L}D{I|L} 3 6 31.198 0 0 3.0363 0 0 668.3039004202838 0 668.3039004202838 0 11.787887749990343 0 0 0 0.5 0 0 0 + {I|L}D{I|L} 3.0363 + + 92 NaN NaN 140466.5 NaN 13252 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16622 70.711 NaN 228010 35 0 35197 0.261 + 15701 LPERFLAVL 9 55 529.3237987410728 1056.6330445489455 2 529.3239135742188 MULTI HCD FTMS 0 0 0 16616 73240.8359375 0.7750010230202286 1 -0.03276824951171875 6 Unmodified _LPERFLAVL_ ENSG00000198189|ENST00000358290|HSD17B11;ENST00000502576.5_1_4:88258430-88295551:-|nuORF 13.614867670302875 0.2427269026982664 1 {I|L}AV{I|L} 4 5 35.433 0 0 3.3534 0 0 642.3469105451187 0 642.3469105451187 0 19.948500216800937 0 0 0 0.5 0 0 0 + {I|L}AV{I|L} 3.3534 + + 27 NaN NaN 118563.5 NaN 13253 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16623 70.714 NaN 503830 35 0 24764 0.261 + -1 YNNACFNLIGG 11 93 621.7823641191582 1241.5501753051162 2 621.7841186523438 MULTI HCD FTMS 0 0 0 16616 105011.3828125 0.023157130964409803 53 -1.4966354370117188 7 Carbamidomethyl (C) _YNNAC(Carbamidomethyl (C))FNLIGG_ REV__ENSG00000100116|ENST00000248924|GCAT;REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF 19.256988751693697 0.28929563740265996 1 [YN]AMC(Carbamidomethyl (C)){I|L}N 7 -1 62.145 0 0 5.0054 0 0 0 372.15647302799067 372.15647302799067 31.539799396834987 0 0 0 0 1 1.5228787452803376 0 1.2971062485323515 [YN]AMC(Carbamidomethyl (C)){I|L}N 5.0054 - 2262 + NaN NaN 171961 NaN 13254 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16624 70.717 NaN 256880 35 0 16223 0.261 + 28614 TQPGTGWVQF 10 81 560.7748141092404 1119.5350752852808 2 560.7747192382812 MULTI HCD FTMS 0 0 0 16616 66080.1640625 0.5993544631503687 2 -0.058929443359375 8 Unmodified _TQPGTGWVQF_ ENSG00000157191|ENST00000337132|NECAP2;nc|ENSG00000157191|Q9NVZ3-4|NECAP2 42.312485326615175 0.12533928745458864 1 QVSYPSQ{M(Oxidation (M))|F} 8 7 53.18 0 0 4.7502 0 0 165.06357368945868 0 165.06357368945868 0 47.69585969540586 0 0 0 0.8182503180159344 0 0.7742275032520141 0.6109243748081782 QVSYPSQ{M(Oxidation (M))|F} 4.7502 - 1246 + NaN NaN 123365 NaN 13255 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16625 70.721 NaN 277230 35 0 74726 0.261 -1 0 62 503.1076226854327 NaN 0 503.107666015625 PEAK HCD FTMS 0 0 0 16616 69765.6640625 0.6238372044284732 45 -1.26776123046875 9 NaN NaN 1 M 1 -1 3.4949 0 0 0.34802 0 0 459.13399429489044 411.0062349908813 870.1402292857717 0 0 0 0 0 0 0 0 0 M 0.34802 - 3 + NaN NaN 129131.2 NaN 13256 3367 16616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16627 70.726 NaN 1664200 35 0 186510 0.327 + 19746 NYAWVYYHL 9 100 614.7929287250602 1227.5713045169202 2 614.7930297851562 MULTI HCD FTMS 0 0 0 16626 895138 0.015953216909556603 57 -1.6089859008789062 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 1 [YN]AWVYYH{I|L} 9 0 + 122.56 0 0 9.9839 9.9839 96.1 0 0 0 27.244237387763093 16.478174818886373 16.478174818886373 15.268024924119672 0 2.8494850021680094 1.6989700043360187 0 2.5471062485323515 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};{[WN]|[YH]}YAVYYH{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L};NYA[{M(Oxidation (M))|F}V]VN[NG][KC] 9.9839;8.7401;7.7645;7.0907;5.9503;5.8469;5.5788;4.8287;4.6572;4.2625 +;-;+;-;-;-;-;-;-;- + 2403 NaN NaN 334910.2 NaN 13257 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16628 70.73 NaN 791940 35 0 90909 0.261 + 29421 TYTDRVFFL 9 89 581.3005047013379 1160.5864564694757 2 581.3007202148438 MULTI HCD FTMS 0 0 0 16626 377812.1875 0.07518298147420156 16 -0.4453277587890625 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 79.59630418116434 0.005983006570063981 1 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 91.647 0 0 7.8966 7.8966 93.384 0 0 0 15.426740567922437 14.247425010840047 14.247425010840047 14.247425010840047 0 2.5682503180159344 1.6989700043360187 1.1861818737241734 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]T{[QG]|[NA]}[KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KS][NG]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]Q{[SA]|[TG]}[KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}KK[DN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KS][NG]V{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.8966;6.669;6.619;5.3914;5.132;3.9869;3.4731;3.145;2.63;2.2455 +;-;-;-;-;-;-;-;-;- + 1574 NaN NaN 205301.6 NaN 13258 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16629 70.734 NaN 1339700 35 0 110400 0.261 + 7351 FVDETWQQL 9 125 583.2796599425349 1164.5447669518696 2 583.7614135742188 MULTI HCD FTMS 0 0 0 16626 56242.21875 0.12159210406751457 10 -0.2584075927734375 3 Unmodified _FVDETWQQL_ ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2 43.77239144664712 0.04802738721622131 1 [YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY 8 8 60.224 0 0 5.1715 0 0 0 161.09296084563087 161.09296084563087 12.448995141495722 0 0 0 0 0 1.6989700043360187 0.5451140161145328 1.5387254899964358 [YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY 5.1715 - 5638 NaN NaN 288984.3 NaN 13259 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16630 70.737 NaN 171540 35 0 15781 0.261 + 10183 IFTDVALKF 9 55 527.3025213913324 1052.5904898494648 2 527.3028564453125 MULTI HCD FTMS 0 0 0 16626 47283.8125 0.10768433787364635 8 -0.2027740478515625 4 Unmodified _IFTDVALKF_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 36.12702656103203 0.08312389501731911 1 {I|L}K{M(Oxidation (M))|F} 3 6 31.682 0 0 3.0099 0 0 646.3383656232437 0 646.3383656232437 0 5.713337517843655 0 0 0 1 0 0 0 + {I|L}K{M(Oxidation (M))|F} 3.0099 + + 25 NaN NaN 102072.5 NaN 13260 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16631 70.74 NaN 234200 35 0 12296 0.261 + 34053 YNDWMFIAK 9 70 594.2804185465022 NaN 0 594.2686767578125 PEAK HCD FTMS 0 0 0 16626 19247.017578125 0.7134881080766032 -2 0.06566619873046875 5 Unmodified _YNDWMFIAK_ ENSG00000131203|ENST00000518237|IDO1 11.640296217721598 0.23883959125015683 1 TW 2 8 10.969 0 0 0.92446 0 0 165.10092438847238 731.2936952992858 896.3946196877582 0 0 0 0 0 0 0 0 0 TW 0.92446 - 15 + NaN NaN 125965.4 NaN 13261 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16632 70.744 NaN 103490 35 0 13810 0.262 + 3894 EPPPEFEF 8 40 496.22412019941333 NaN 0 496.2243347167969 PEAK HCD FTMS 0 0 0 16626 18686.552734375 0.3858335374574717 -8 0.22928619384765625 6 Unmodified _EPPPEFEF_ ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant 18.13498045792455 0.38579626240450227 1 {I|L}{I|L} 2 8 9.464 0 0 0.95554 0 0 145.9526162814155 615.2893770807249 761.2419933621404 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.95554 - 3 + NaN NaN 106028.1 NaN 13262 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16633 70.747 NaN 75185 35 0 5693.4 0.261 + -1 TCNCNNCF 8 52 545.1812759907704 NaN 0 544.775390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 3 Carbamidomethyl (C) _TC(Carbamidomethyl (C))NC(Carbamidomethyl (C))NNC(Carbamidomethyl (C))F_ REV__ENSG00000189308|ENST00000340417|LIN54;REV__LIN54-SEC31A|1|fusion;REV__LIN54-SEC31A|2|fusion;REV__LIN54-SEC31A|3|fusion;REV__LIN54-SEC31A|4|fusion;REV__LIN54-SEC31A|5|fusion;REV__LIN54-SEC31A|6|fusion;REV__LIN54-SEC31A|7|fusion;REV__LIN54-SEC31A|8|fusion;REV__nc|ENSG00000189308|Q6MZP7-2|LIN54;REV__nc|ENSG00000189308|Q6MZP7-3|LIN54;REV__nc|ENSG00000189308|Q6MZP7-4|LIN54 0.7936320650641473 0.38822285293237185 1 D{I|L}D 3 -1 11.682 0 0 1.0734 0 0 223.97227990947187 518.2109469049436 742.1832268144155 0 0 0 0 0 0 0 0 0 D{I|L}D 1.0734 - 8 + NaN NaN 93109.6 NaN 13263 3368 16626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16635 70.752 NaN 2482300 35 0 322800 0.327 + 24126 RYAVEILTW 9 106 575.8162440995874 1149.6179352659747 2 575.8162841796875 MULTI HCD FTMS 0 0 0 16634 1610791 0.7183144221779703 1 -0.02614593505859375 1 Unmodified _RYAVEILTW_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 86.33184430468982 0.004622086694044132 1 T{I|L}AE{I|L}{I|L}TW 8 3 77.772 0 0 6.7651 0 0 204.08898423989905 0 204.08898423989905 0 59.36349630093929 0 0 0 1 0 1.9916440611282624 0 T{I|L}AE{I|L}{I|L}TW 6.7651 - 5385 + NaN NaN 402797.2 NaN 13264 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16636 70.756 NaN 644090 35 0 66581 0.261 + 4497 EYISIALRI 9 74 539.3187701384826 1076.622987343765 2 539.3190307617188 MULTI HCD FTMS 0 0 0 16634 157054.703125 0.21322573002890866 -1 0.02616119384765625 2 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 110.6747026088012 0.0028322563155251486 1 [YE]{I|L}S{I|L}A{I|L}R{I|L} 9 0 + 80.772 0 0 7.5023 7.5023 88.59 0 0 0 6.7216751192405155 6.7216751192405155 6.7216751192405155 6.143644969955076 0 2.6989700043360187 1.5228787452803376 2.524227503252014 0 + + [YE]{I|L}S{I|L}A{I|L}R{I|L};[YE]{I|L}S{I|L}AR{I|L}{I|L};[YE]VT{I|L}A{I|L}R{I|L};{[QN]|[E{I|L}]|[KN]}YS{I|L}A{I|L}R{I|L};{[QN]|[E{I|L}]|[KN]}YS{I|L}AR{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}YS{I|L}A{I|L}[VG]{I|L};{[QN]|[E{I|L}]|[KN]}YS{I|L}A[VG]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YT]A{I|L}R{I|L};{[QN]|[E{I|L}]|[KN]}V[YT]AR{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YT]A{I|L}[VG]{I|L} 7.5023;6.9317;5.4966;4.8671;4.2964;4.0118;3.4412;3.3103;2.7396;2.455 +;-;-;-;-;-;-;-;-;- + 606 NaN NaN 181618.2 NaN 13265 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16637 70.76 NaN 357110 35 0 51484 0.261 + 3852 EPISVEVQL 9 58 507.2792494925505 1012.543946051901 2 507.2793273925781 MULTI HCD FTMS 0 0 0 16634 110562.1328125 0.3167323931834809 -1 0.02616119384765625 3 Unmodified _EPISVEVQL_ ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 63.960520009940105 0.0120409805053046 1 {[QN]|[E{I|L}]|[KN]}PSVEVQ{I|L} 9 2 + 60.701 0 0 5.9949 5.9949 85.042 0 0 0 7.837644437256728 16.478174818886373 7.837644437256728 4.265997036641593 0 1.9731975075880328 1.154901959985743 1.1549471895720984 0 {[QN]|[E{I|L}]|[KN]}PSVEVQ{I|L};{[QN]|[E{I|L}]|[KN]}P{[NV]|[RG]}D{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}SPVEVQ{I|L};[{I|L}T]DPVEVQ{I|L};{[QN]|[E{I|L}]|[KN]}PSVEV[AG]{I|L};{[QN]|[E{I|L}]|[KN]}SPVEV[AG]{I|L};[{I|L}T]DPVEV[AG]{I|L} 5.9949;5.5736;5.5181;5.2208;5.0855;4.6087;4.3114 -;-;-;-;-;-;- 271 NaN NaN 137439.6 NaN 13266 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16638 70.763 NaN 237120 35 0 46645 0.261 + 10106 IFIDKIYSI 9 62 556.3230650472 1110.6315771611999 2 556.3231201171875 MULTI HCD FTMS 0 0 0 16634 88917.171875 0.5633339213460701 -2 0.058929443359375 4 Unmodified _IFIDKIYSI_ ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586 59.368380827593164 0.01846506874148156 1 {I|L}{M(Oxidation (M))|F}{I|L}D[K{I|L}]YS{I|L} 9 0 + 57.932 0 0 5.2161 5.2161 84.618 0 0 0 14.09256854528806 6.382104921644455 6.382104921644455 6.382104921644455 0 2.1237125054200234 0 1.2134679910804405 0 + + {I|L}{M(Oxidation (M))|F}{I|L}D[K{I|L}]YS{I|L};{I|L}{M(Oxidation (M))|F}{I|L}D[K{I|L}]SY{I|L} 5.2161;4.6415 +;- + 131 + NaN NaN 117141.3 NaN 13267 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16639 70.766 NaN 158020 35 0 10824 0.262 -1 LEKKLQLMVEE 11 55 459.25512952329814 1374.7435591700944 3 459.25457763671875 MULTI HCD FTMS 0 0 0 16634 29519.69140625 0.2689838686725154 -7 0.20647430419921875 5 Oxidation (M) _LEKKLQLM(Oxidation (M))VEE_ ENSG00000135968|ENST00000309863|GCC2 3.8459078486920597 0.402053821155582 1 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.5253 0 0 0 1095.6115592254544 1095.6115592254544 14.3753063169585 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.5253 - 15 + NaN NaN 105412.2 NaN 13268 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16640 70.77 NaN 73470 35 0 4857.6 0.261 -1 LACALEVVM 9 40 482.7451744359102 963.4757959386204 2 482.7454528808594 MULTI HCD FTMS 0 0 0 16634 25409.91796875 0.1799897898762057 20 -0.5595016479492188 6 Oxidation (M) _LACALEVVM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 21.74664581756881 0.17247014374749275 1 EVV{M(Oxidation (M))|F} 4 -1 43.175 0 0 4.4812 0 0 471.25007069623604 0 471.25007069623604 0 36.18562527100117 0 0 0 1.4247425010840047 0 0 0 EVV{M(Oxidation (M))|F} 4.4812 + + 38 + NaN NaN 88836.5 NaN 13269 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16641 70.773 NaN 77436 35 0 7549 0.261 + 14762 LHWEPIRD 8 45 533.2772094470163 NaN 0 533.2763061523438 PEAK HCD FTMS 0 0 0 16634 7232.046875 0.33623379912407597 1 -0.02614593505859375 7 Unmodified _LHWEPIRD_ ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-2|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT;nc|ENSG00000168743|Q6UXI9-4|NPNT;nc|ENSG00000168743|Q6UXI9-5|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT 2.302733041254933 0.38822285293237185 1 V 1 8 6.9897 0 0 0.65659 0 0 597.3591846637606 365.0918367975219 962.4510214612826 0 0 0 0 0 0 0 0 0 V 0.65659 - 1 + NaN NaN 87370.1 NaN 13270 3369 16634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16643 70.778 NaN 392060 35 0 33736 0.327 + 6050 FPDWREDVL 9 86 588.7877329764015 1175.5609130196028 2 588.7879028320312 MULTI HCD FTMS 0 0 0 16642 125422.015625 0.2985632454960035 10 -0.27832794189453125 1 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 38.61474834105838 0.07170385841135779 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 6 36.695 0 0 3.1215 0 0 0 813.3899590003247 813.3899590003247 10.764837301042718 0 0 0 0 0.9247425010840047 2 0 0 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3.1215 + + 312 NaN NaN 152122.9 NaN 13271 3370 16642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16644 70.782 NaN 98402 35 0 30324 0.262 -1 0 31 476.3065305204448 475.29925405384483 1 476.30633544921875 MULTI HCD FTMS 0 0 0 16642 53622.80859375 0.2135295108039335 22 -0.6241302490234375 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91517.3 NaN 13272 3370 16642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16645 70.786 NaN 158080 35 0 11707 0.261 + 4355 EWDLRDIDF 9 57 604.7829399047946 1207.551326876389 2 604.768310546875 MULTI HCD FTMS 0 0 0 16642 27742.16015625 0.5175861019759317 13 -0.3701171875 3 Unmodified _EWDLRDIDF_ ENSG00000276234|ENST00000615182|TADA2A;nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A 7.289230182591677 0.29575926068275815 1 D{M(Oxidation (M))|F}NAAP{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 9 7 23.65 0 0 1.9585 0 0 165.11851477858914 0 165.11851477858914 0 18.165696912895374 0 0 0 0 0 0.3807196863200844 0 D{M(Oxidation (M))|F}NAAP{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 1.9585 - 203 + NaN NaN 105120.8 NaN 13273 3370 16642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16646 70.789 NaN 78138 35 0 5164.3 0.261 + 5845 FPDEFHLQTL 10 43 623.8086092601616 1245.602665587123 2 623.8090209960938 MULTI HCD FTMS 0 0 0 16642 41855.8046875 0.08949492227509818 16 -0.44815826416015625 4 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 11.494710602746466 0.4035943721457025 1 {I|L}QT{I|L} 4 6 34.725 0 0 2.7878 0 0 772.3177357404312 0 772.3177357404312 0 25.260847058321687 0 0 0 0.3807196863200844 0 0.5 0 + {I|L}QT{I|L} 2.7878 + + 45 NaN NaN 110576.4 NaN 13274 3370 16642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16647 70.793 NaN 116270 35 0 36981 0.264 + -1 NRIRITMYF 9 36 410.55343159526205 1228.6384653859861 3 410.5543518066406 MULTI HCD FTMS 0 0 0 16642 22890 0.032806101375905304 32 -0.9127273559570312 5 Oxidation (M) _NRIRITM(Oxidation (M))YF_ REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1 2.498486711656943 0.33207666356665205 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7898 0 0 1063.5593313301251 0 1063.5593313301251 0 17.385606273598313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7898 + + 3 + NaN NaN 103241.8 NaN 13275 3370 16642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16649 70.798 NaN 3080400 35 0 246770 0.326 + 4710 EYQKVWNLF 9 118 613.8136951048748 1225.6128372765495 2 613.8143920898438 MULTI HCD FTMS 0 0 0 16648 1691382.625 0.12036689614466152 -6 0.16040802001953125 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 143.21322497773306 1.6000761055044888E-05 1 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 77.795 0 0 6.3474 6.3474 86.983 0 0 0 7.4793345544852485 9.771212547196626 7.4793345544852485 7.4793345544852485 0 2.548455006504028 1 2.6549471895720984 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};[YE]QKVWN{M(Oxidation (M))|F}{I|L};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWNPY 6.3474;5.7372;5.5961;5.5961;5.5502;5.2046;5.1813;4.9894;4.9399;4.8853 +;-;-;-;-;-;-;-;-;- + 6479 NaN NaN 572592.9 NaN 13276 3371 16648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16650 70.802 NaN 364800 35 0 31261 0.261 + 22961 QYVYWLHML 9 62 634.8103877121284 1267.6062224910568 2 634.810546875 MULTI HCD FTMS 0 0 0 16648 193667.765625 0.32973576312025027 11 -0.32770538330078125 2 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 89.42679046578446 0.004540987215715461 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 10 8 + 64.186 0 0 5.0636 5.0636 87.334 0 0 0 8.067336481787208 16.842021443606185 8.067336481787208 9.827796776480469 0 1.7530834337684313 1.3979400086720375 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YQ]VYW{I|L}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]V{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[YD]|[{M(Oxidation (M))|F}M]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}AA{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5.0636;4.2883;4.2883;3.5483;3.1798;3.0535;3.0535;2.9837;2.5157;2.4045 -;-;-;+;-;-;-;-;-;- + 553 NaN NaN 137496.3 NaN 13277 3371 16648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16651 70.806 NaN 395670 35 0 41741 0.263 + 10299 ILDPHVVLL 9 75 509.8183259944046 1017.6220990556092 2 509.8184814453125 MULTI HCD FTMS 0 0 0 16648 172020.03125 0.794192365502939 3 -0.08188629150390625 3 Unmodified _ILDPHVVLL_ ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF 57.47134341890925 0.0211188941628804 1 {I|L}{I|L}DP[HV]V{I|L}{I|L} 9 0 + 68.808 0 0 6.7616 6.7616 90.766 0 0 0 49.3931053707896 8.541805849497948 8.541805849497948 11.635665194855136 0 2.1989700043360187 2 0.9247425010840047 0 + + {I|L}{I|L}DP[HV]V{I|L}{I|L};{I|L}{I|L}D[YR]{I|L}{I|L}{I|L};{I|L}{I|L}[YR]EV{I|L}{I|L};{I|L}{I|L}[YR]D{I|L}{I|L}{I|L};{I|L}{I|L}[YR]{I|L}D{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]G{I|L}{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[YR]{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][{I|L}A]V{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YR]{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{I|L}{I|L}{I|L} 6.7616;5.6182;4.7189;4.1035;3.9305;2.7895;2.7704;2.6887;2.5196;1.4486 +;-;-;-;-;-;-;-;-;- + 395 + NaN NaN 143337 NaN 13278 3371 16648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16652 70.809 NaN 364760 35 0 20959 0.261 + 22464 QQYAVFENIF 10 83 629.8087122251125 1257.6028715170248 2 629.8087768554688 MULTI HCD FTMS 0 0 0 16648 109999.578125 0.09732275412506287 -6 0.16040802001953125 4 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 27.628801355627647 0.2527626205058048 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GET{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F} 11 -1 + 63.18 0 0 5.0238 5.0238 82.156 0 0 0 13.16009860523576 -0.4269621354354669 -0.4269621354354669 1.5321251377534182 0 1 1.6989700043360187 1.5 0 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GET{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GET{[CT]|[{M(Oxidation (M))|F}G]}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{[DA]|[EG]}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}{[WS]|[C(Carbamidomethyl (C)){I|L}]}N{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[DS]|[MA]|[CV]|TT}{[WS]|[C(Carbamidomethyl (C)){I|L}]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}RKHN[SG];{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GER[YT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GET[YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}Y[RD][YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.0238;4.902;4.298;4.1761;3.7422;3.0463;2.2331;2.1195;2.1195;1.5595 -;-;-;-;-;-;-;-;-;- 878 NaN NaN 141806.3 NaN 13279 3371 16648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16653 70.812 NaN 274530 35 0 15030 0.262 + 16768 LYDLDLGKF 9 81 542.2898259904644 NaN 0 542.2889404296875 PEAK HCD FTMS 0 0 0 16648 49364.83203125 0.28950431051664166 5 -0.13089752197265625 5 Unmodified _LYDLDLGKF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 59.368380827593164 0.026574524365726337 1 YD{I|L}D{I|L}GK 7 2 43.166 0 0 3.9874 0 0 113.08775637370361 162.0561464899047 275.14390286360833 0 0 0 0 0 2.079689690656103 0 0 1.0994850021680094 + YD{I|L}D{I|L}GK 3.9874 + + 286 + NaN NaN 122458.6 NaN 13280 3371 16648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16655 70.817 NaN 235660 35 0 79368 0.327 + 20848 PIAYDGEVL 9 40 488.75292295719345 975.4912929811869 2 488.7529296875 MULTI HCD FTMS 0 0 0 16654 167109.546875 0.9573039305722192 2 -0.06229400634765625 1 Unmodified _PIAYDGEVL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 10.823927491677226 0.26684000660059787 1 WV{I|L} 3 7 35.445 0 0 3.6336 0 0 559.2642987272847 0 559.2642987272847 0 35.35666875892183 0 0 0 0.9247425010840047 0 0 0 WV{I|L} 3.6336 - 15 NaN NaN 111061.1 NaN 13281 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16656 70.822 NaN 151410 35 0 14706 0.261 + 31818 VYMDWYEKF 9 44 640.7862258131424 1279.5578986930848 2 641.2886962890625 MULTI HCD FTMS 0 0 0 16654 48265.171875 0.05719667590314936 37 -1.0587997436523438 2 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 34.93206674587334 0.08860942999206235 1 [YV]MDWYEK{M(Oxidation (M))|F} 9 0 + 65.015 0 0 5.0811 5.0811 91.628 0 0 0 23.332815690330122 37.79676584209078 23.332815690330122 65.01525333825434 0 1.8182503180159344 1.6989700043360187 0 0 + + [YV]MDWYEK{M(Oxidation (M))|F} 5.0811 + + 66 NaN NaN 100644.3 NaN 13282 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16657 70.825 NaN 269300 35 0 12438 0.262 -1 MKKIFITL 8 63 526.314496130303 1050.614439327406 2 526.31494140625 MULTI HCD FTMS 0 0 0 16654 19826.517578125 0.4106384116551801 1 -0.02950286865234375 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))KKIFITL_ tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1 10.823927491677226 0.514154816617796 1 W{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 31.454 0 0 2.9938 0 0 382.3061640361935 0 382.3061640361935 0 9.532752595507255 0 0 0 0 0 0 0 W{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 2.9938 - 135 + NaN NaN 121319 NaN 13283 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16658 70.829 NaN 203650 35 0 12552 0.261 + 6614 FPLQFGREVL 10 67 603.3371534618441 1204.659753990488 2 603.33740234375 MULTI HCD FTMS 0 0 0 16654 22918.140625 0.26448064631066015 7 -0.20306396484375 4 Unmodified _FPLQFGREVL_ ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1 8.444304893310646 0.4306066564229251 1 V{I|L} 2 8 13.188 0 0 1.0947 0 0 974.4996730109445 0 974.4996730109445 0 1.7609125905568117 0 0 0 0 0 0 0 + V{I|L} 1.0947 + + 191 NaN NaN 110063.8 NaN 13284 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16659 70.832 NaN 147400 35 0 11859 0.261 + 23047 RDRCFIYF 8 71 560.2727793713502 NaN 0 560.2733764648438 PEAK HCD FTMS 0 0 0 16654 42227.984375 0.6715436946530895 -3 0.0653076171875 5 Unmodified _RDRCFIYF_ REV__AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|20|2|anti-sense 24.67388899826682 0.38182156912090326 1 ASV{M(Oxidation (M))|F}A{I|L}T 7 -1 24.746 0 0 2.2124 0 0 221.10887397700156 205.06173120670158 426.1706051837032 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 ASV{M(Oxidation (M))|F}A{I|L}T 2.2124 - 492 + NaN NaN 102641.9 NaN 13285 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16660 70.835 NaN 220040 35 0 18578 0.261 -1 FPDELEEML 9 61 569.7521852751048 1137.4898176170095 2 569.751220703125 MULTI HCD FTMS 0 0 0 16654 58503.078125 0.6942479742199833 -3 0.0653076171875 6 Oxidation (M) _FPDELEEM(Oxidation (M))L_ ENSG00000051382|ENST00000674063|PIK3CB 26.88365393820708 0.12808753336095696 1 DEE{M(Oxidation (M))|F}{I|L} 5 -1 39.526 0 0 3.4748 0 0 486.23436171699376 0 486.23436171699376 0 18.556518697048716 0 0 0 0.7302046884880937 0 0.3807196863200844 0 DEE{M(Oxidation (M))|F}{I|L} 3.4748 - 256 NaN NaN 109340.6 NaN 13286 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16661 70.838 NaN 221720 35 0 19735 0.262 -1 LEVPDMNI 8 48 473.73125752503404 945.4479621168681 2 474.2330322265625 MULTI HCD FTMS 0 0 0 16654 29816.830078125 0.11328804794689296 -34 0.8954238891601562 7 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 1 {I|L}N{I|L} 3 -1 28.94 0 0 3.061 0 0 587.2257401464693 0 587.2257401464693 0 11.532577433616993 0 0 0 0.4247425010840047 0 0 0 {I|L}N{I|L} 3.061 - 80 NaN NaN 119565.3 NaN 13287 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16662 70.842 NaN 104750 35 0 12957 0.261 -1 EIVCLHWLLW 10 43 456.90739174271505 1367.7003458283452 3 456.9080810546875 MULTI HCD FTMS 0 0 0 16654 7587.52587890625 0.20906360671808283 -5 0.124237060546875 8 Carbamidomethyl (C) _EIVC(Carbamidomethyl (C))LHWLLW_ nc|ENSG00000137494|Q8N9B4|ANKRD42 0.776531954647913 0.4711933975711956 1 W 1 -1 16.99 0 0 1.2422 0 0 1163.6103780322499 0 1163.6103780322499 0 16.989700043360187 0 0 0 0 0 0 0 W 1.2422 + + 10 + NaN NaN 101047.9 NaN 13288 3372 16654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16664 70.847 NaN 1374200 35 0 166720 0.327 + 24127 RYAVEILTW 9 96 575.8162440995874 1149.6179352659747 2 575.816650390625 MULTI HCD FTMS 0 0 0 16663 629751.1875 0.2808305735287527 5 -0.1374359130859375 1 Unmodified _RYAVEILTW_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 79.59630418116434 0.005983006570063981 1 {I|L}D{M(Oxidation (M))|F}E{I|L}{I|L}TW 8 4 86.707 0 0 7.5422 0 0 114.09613841058133 0 114.09613841058133 0 56.74887184618707 0 0 0 2.5 0 2.778659694992122 0 {I|L}D{M(Oxidation (M))|F}E{I|L}{I|L}TW 7.5422 - 4828 + NaN NaN 308104.7 NaN 13289 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16665 70.851 NaN 1041100 35 0 191850 0.261 + 34835 YRLESPIIL 9 82 552.3265013397413 1102.6384497462825 2 552.3267822265625 MULTI HCD FTMS 0 0 0 16663 213111.640625 0.023418467868067713 21 -0.6178436279296875 2 Unmodified _YRLESPIIL_ REV__ENSG00000014138|ENST00000265465|POLA2;REV__ENST00000527850.5_1_11:65029833-65063521:+|nuORF;REV__nc|ENSG00000014138|Q14181-2|POLA2 29.081581746732265 0.1154664336125038 1 {I|L}{I|L}[HK]TDV{M(Oxidation (M))|F} 8 -1 46.283 0 0 4.1975 0 0 131.09426484088493 0 131.09426484088493 0 27.697600846483134 0 0 0 0.7887254899964358 0 0.9802046884880938 0 {I|L}{I|L}[HK]TDV{M(Oxidation (M))|F} 4.1975 - 1246 + NaN NaN 242880.2 NaN 13290 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16666 70.855 NaN 850010 35 0 37198 0.261 + 610 APFKFDMEL 9 104 549.2704411230641 1096.526329312928 2 549.2708129882812 MULTI HCD FTMS 0 0 0 16663 214090.703125 0.33210020814365315 5 -0.1374359130859375 3 Unmodified _APFKFDMEL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 65.47368725323818 0.010552856507075443 1 DGA{I|L}TME{I|L} 8 6 40.406 0 0 3.6849 0 0 248.11558730293126 0 248.11558730293126 0 -2.1937956088788724 -2.1937956088788724 0 0 0.5994850021680094 0 0.9531198197908842 0 DGA{I|L}TME{I|L} 3.6849 - 7261 NaN NaN 212411.3 NaN 13291 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16667 70.858 NaN 1085800 35 0 52741 0.261 + -1 TMQLMVQNLF 10 103 620.8043883709606 1239.5942238087212 2 620.8033447265625 MULTI HCD FTMS 0 0 0 16663 319144.6875 0.21007407184336896 -4 0.09481048583984375 4 Oxidation (M) _TM(Oxidation (M))QLMVQNLF_ REV__ENST00000471947.1_1_2:55633152-55646215:-|nuORF 45.69961567697781 0.09594615698576985 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]WN{I|L}{M(Oxidation (M))|F} 10 -1 + 84.399 0 0 6.8086 6.8086 86.476 0 0 0 19.20818753952375 15.026975159433533 15.026975159433533 4.136642266047346 0 1.305462187404089 1.6989700043360187 2.138210492164445 0.6139829889124311 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]WN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}D{M(Oxidation (M))|F}[TA]WN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]WGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DR{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}D{M(Oxidation (M))|F}[TA]WGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}D{M(Oxidation (M))|F}R{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DGP{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DGV{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]T[QA]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}N[TA]WN{I|L}{M(Oxidation (M))|F} 6.8086;6.4749;6.0693;5.8805;5.7356;5.5468;5.5193;5.2765;5.2626;5.259 -;-;-;-;-;-;-;-;-;- 6190 NaN NaN 251253 NaN 13292 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16668 70.861 NaN 470620 35 0 47179 0.262 + 1262 AYLVNTYAL 9 69 514.2765773803314 1026.5386018274628 2 514.2767333984375 MULTI HCD FTMS 0 0 0 16663 107985.453125 0.2759985127938071 -4 0.09481048583984375 5 Unmodified _AYLVNTYAL_ ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF 99.79894945604345 0.0042691968066200965 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L} 9 0 + 96.428 0 0 9.3935 9.3935 95.768 0 0 0 15.898255349109505 16.478174818886373 15.898255349109505 15.898255349109505 0 2.3494850021680094 1.2218487496163564 0.6139829889124311 0.7742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VNTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGGTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}VYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VGGTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNT{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[QS]|[NT]}VYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGGT{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VNT{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VGGT{I|L}S{M(Oxidation (M))|F} 9.3935;7.8448;7.7423;6.7878;6.1936;5.9239;5.2391;5.0269;4.3752;3.4781 +;-;-;-;-;-;-;-;-;- + 916 NaN NaN 153421 NaN 13293 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16669 70.865 NaN 519320 35 0 27266 0.261 + 27402 SYTRYGLSW 9 82 566.7752665133095 NaN 0 566.775634765625 PEAK HCD FTMS 0 0 0 16663 42219.00390625 0.3695870341112966 1 -0.0327911376953125 6 Unmodified _SYTRYGLSW_ REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 19.256988751693697 0.19238547928067054 1 SV 2 -1 20.573 0 0 1.8182 0 0 204.09201651077223 738.3237398736936 942.4157563844658 0 0 0 0 0 0.8807196863200843 0 0.3807196863200844 0 SV 1.8182 - 36 + NaN NaN 183428.4 NaN 13294 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16670 70.868 NaN 166390 35 0 12741 0.261 + -1 RCADWLVL 8 54 516.7675229176797 NaN 0 516.7501831054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _RC(Carbamidomethyl (C))ADWLVL_ REV__ENST00000323944.9_1_14:25444023-25519191:-|nuORF;REV__ENST00000396700.5_1_14:25479837-25519191:-|nuORF 8.593279151180031 0.38822285293237185 1 AE 2 -1 10.969 0 0 1.0634 0 0 131.13355835080932 697.2891750563001 828.4227334071095 0 0 0 0 0 0 0 0 0 AE 1.0634 - 9 + NaN NaN 113676.4 NaN 13295 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16671 70.871 NaN 124520 35 0 5355.2 0.261 -1 MPDLLDINHL 10 67 598.8022073522872 1195.5898617713742 2 599.3046875 MULTI HCD FTMS 0 0 0 16663 49621.7421875 0.5674069586240978 7 -0.20966339111328125 8 Oxidation (M) _M(Oxidation (M))PDLLDINHL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 14.405379775768559 0.37636895476610294 1 {I|L}{M(Oxidation (M))|F}[DP]{I|L}D{I|L}N[H{I|L}] 10 -1 + 31.82 0 0 2.6615 2.6615 85.661 0 0 0 11.0235909396512 4.884381005764311 4.884381005764311 13.411964496339298 0 0.5 0 0 0.4247425010840047 {I|L}{M(Oxidation (M))|F}[DP]{I|L}D{I|L}N[H{I|L}];{I|L}{M(Oxidation (M))|F}[DP]{I|L}D{I|L}GG[H{I|L}];{I|L}Y[HT]AD{I|L}N[H{I|L}];{[CT]|[{M(Oxidation (M))|F}G]}[HM]{I|L}D{I|L}N[H{I|L}];{I|L}{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}[HV]{I|L}N[H{I|L}];{[CT]|[{M(Oxidation (M))|F}G]}[HM]{I|L}D{I|L}GG[H{I|L}];{I|L}Y[HT]AD{I|L}GG[H{I|L}];{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}[HV]{I|L}N[H{I|L}] 2.6615;1.5397;1.4451;1.346;0.67497;0.57945;0.32336;0.27693 -;-;-;-;-;-;-;- 272 + NaN NaN 103989.6 NaN 13296 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16672 70.875 NaN 396240 35 0 23841 0.261 -1 DPNLEFVAM 9 74 526.2420242273795 1050.4694955215589 2 526.241455078125 MULTI HCD FTMS 0 0 0 16663 27428.767578125 0.20231285462120877 -11 0.3012847900390625 9 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 24.990960013464015 0.14443998892849796 1 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 50.222 0 0 4.7809 0 0 439.20799452949376 0 439.20799452949376 0 26.030724708029176 0 0 0 2.1549471895720984 0 0 0 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 4.7809 + + 121 NaN NaN 143077.4 NaN 13297 3373 16663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16674 70.879 NaN 746850 35 0 81644 0.327 + 20352 NYSPYVNYF 9 98 583.7612116326577 1165.5078703321153 2 583.7615356445312 MULTI HCD FTMS 0 0 0 16673 283171.90625 0.5225747780982167 4 -0.104644775390625 1 Unmodified _NYSPYVNYF_ ENSG00000156162|ENST00000414645|DPY19L4 118.0683919894846 0.0016252157255221692 1 [YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY{M(Oxidation (M))|F} 9 0 + 98.547 0 0 8.4553 8.4553 92.181 0 0 0 20.527646714607343 16.478174818886373 16.478174818886373 9.208187539523749 0 2.9247425010840047 1.6989700043360187 0.2742275032520141 1.370371515030528 + + [YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY{M(Oxidation (M))|F};[YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VGGY{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{[CP]|[EA]}VNY{M(Oxidation (M))|F};[YG]GS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{[CP]|[EA]}VGGY{M(Oxidation (M))|F};[YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F}YN;[YG]G{M(Oxidation (M))|F}{[CP]|[EA]}VNY{M(Oxidation (M))|F};[YG]GS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VGGY{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{[CP]|[EA]}V{M(Oxidation (M))|F}YN;[YG]GS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F}YN 8.4553;7.6652;7.4658;6.694;6.6758;6.3021;5.7046;5.3376;5.3127;4.5409 +;-;-;-;-;-;-;-;-;- + 4089 NaN NaN 192422.3 NaN 13298 3374 16673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16675 70.884 NaN 521580 35 0 52408 0.261 + 29422 TYTDRVFFL 9 69 581.3005047013379 1160.5864564694757 2 581.30078125 MULTI HCD FTMS 0 0 0 16673 296624.03125 0.059026891625278056 22 -0.6408157348632812 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 72.96794272382148 0.008127836904478181 1 [YT]WWV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 4 60.819 0 0 5.2404 0 0 0 128.06895320597542 128.06895320597542 45.8188758147498 0 0 0 0 1.8494850021680094 1.6989700043360187 1.2614393726401687 0 [YT]WWV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2404 - 419 NaN NaN 161220 NaN 13299 3374 16673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16676 70.887 NaN 437470 35 0 22319 0.261 + 12529 KRYYNDKF 8 83 567.289426710091 NaN 0 567.27880859375 PEAK HCD FTMS 0 0 0 16673 9755.140625 0.22104180985286248 -2 0.06229400634765625 3 Unmodified _KRYYNDKF_ REV__tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1 15.847184025352803 0.3871869056683869 1 K 1 -1 11.268 0 0 0.99491 0 0 165.07911879707189 836.3676506669225 1001.4467694639943 0 0 0 0 0 0.8252574989159953 0 0 0.2302046884880938 K 0.99491 + + 165 NaN NaN 151590.1 NaN 13300 3374 16673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16677 70.891 NaN 422950 35 0 20835 0.261 + 19020 NAVYTFETL 9 70 529.2636621988655 1056.512771464531 2 529.2637329101562 MULTI HCD FTMS 0 0 0 16673 205317.203125 0.6578717305675451 -2 0.06229400634765625 4 Unmodified _NAVYTFETL_ ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2 149.91393105778798 8.917243180786556E-06 1 {[QG]|[NA]}VYT{M(Oxidation (M))|F}ET{I|L} 9 0 + 111.61 0 0 10.564 10.564 95.721 0 0 0 12.74227503252014 12.74227503252014 12.74227503252014 12.25772496747986 0 2.6989700043360187 1.6989700043360187 1.079689690656103 0.6989700043360187 + + {[QG]|[NA]}VYT{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}VYTE{M(Oxidation (M))|F}T{I|L};{I|L}[NG]YT{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}VYT{[YD]|[{M(Oxidation (M))|F}M]}V{I|L};[KQ][YE]{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}V[HS][C(Carbamidomethyl (C))R]T{I|L};[KQ][YE]E{M(Oxidation (M))|F}T{I|L};{I|L}[NG]YT{[YD]|[{M(Oxidation (M))|F}M]}V{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[HS]T{[C(Carbamidomethyl (C))G]|[NC]}V{I|L} 10.564;9.4037;7.3272;5.5234;5.1493;4.5738;3.9891;3.4928;1.7355 +;-;-;-;-;-;-;-;- + 466 NaN NaN 139432.9 NaN 13301 3374 16673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16678 70.894 NaN 166290 35 0 17111 0.261 + 28008 TFSFQGTENFI 11 66 645.8034037036042 NaN 0 645.8040771484375 PEAK HCD FTMS 0 0 0 16673 43718.84765625 0.4137069240456189 -4 0.1014556884765625 5 Unmodified _TFSFQGTENFI_ REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant 11.494710602746466 0.3095129597915146 1 {I|L}N{[CP]|[EA]}V 5 -1 8.768 0 0 0.6799 0 0 183.0875680499833 577.2271212213499 760.3146892713332 0 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {I|L}N{[CP]|[EA]}V 0.6799 - 33 + NaN NaN 111348.1 NaN 13302 3374 16673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16680 70.899 NaN 1258800 35 0 81301 0.327 + 19994 NYIEFTRIL 9 99 584.8216400289996 1167.628727124799 2 584.82177734375 MULTI HCD FTMS 0 0 0 16679 507185.53125 0.962719020910362 -1 0.01947784423828125 1 Unmodified _NYIEFTRIL_ ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B 132.37960578797484 0.0004606598083464779 1 [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L} 9 0 + 112.38 0 0 9.6249 9.6249 97.693 0 0 0 31.873707821940087 16.478174818886373 16.478174818886373 34.03463401762758 0 2.610924374808178 1.6989700043360187 0.5283773187068795 1.6375918373824814 + + [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RE{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RE{M(Oxidation (M))|F}T[VG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}T[VG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TP]{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{M(Oxidation (M))|F}TR{I|L}{I|L};[YN]{I|L}[KQ][YN]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TP]{M(Oxidation (M))|F}T[VG]{I|L}{I|L} 9.6249;6.7101;5.6548;5.4493;5.4325;5.4239;5.4216;5.2468;5.1759;4.1441 +;-;-;-;-;-;-;-;-;- + 4963 NaN NaN 283957.6 NaN 13303 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16681 70.903 NaN 872370 35 0 94215 0.261 + 4498 EYISIALRI 9 66 539.3187701384826 1076.622987343765 2 539.3190307617188 MULTI HCD FTMS 0 0 0 16679 440494.375 0.5980383446922188 5 -0.1573944091796875 2 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 129.77232118876745 0.0006187813247758304 1 [YE]{I|L}S{I|L}A{I|L}R{I|L} 9 0 + 93.806 0 0 8.713 8.713 95.05 0 0 0 16.19325543266271 14.973024840566467 14.973024840566467 16.19325543266271 0 2.805462187404089 1.5228787452803376 3.004432191740108 0 + + [YE]{I|L}S{I|L}A{I|L}R{I|L};[Y{I|L}]ES{I|L}A{I|L}R{I|L};[YT]{NN|[MP]|[D{I|L}]|[EV]}{I|L}A{I|L}R{I|L};[Y{I|L}]N[KS]A{I|L}[VG]{I|L};[R{I|L}]A{I|L}S{I|L}[YE]{I|L};[R{I|L}]A{I|L}[{I|L}T]{[YD]|[{M(Oxidation (M))|F}M]}{I|L} 8.713;7.2089;5.1013;3.7211;0.62485;0.23877 +;-;-;-;-;- + 580 NaN NaN 213962.7 NaN 13304 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16682 70.907 NaN 475160 35 0 78471 0.261 + 3853 EPISVEVQL 9 63 507.2792494925505 1012.543946051901 2 507.2793273925781 MULTI HCD FTMS 0 0 0 16679 309555.0625 0.8867965303632604 5 -0.1573944091796875 3 Unmodified _EPISVEVQL_ ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 85.64151623876279 0.004640175941193596 1 EVQ{I|L} 4 5 57.735 0 0 5.702 0 0 525.2807656071534 0 525.2807656071534 0 46.78788774999035 0 0 0 1.5 0 1.2302046884880937 0 + EVQ{I|L} 5.702 + + 397 NaN NaN 164450.7 NaN 13305 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16683 70.91 NaN 1776500 35 0 337550 0.262 -1 0 93 408.5640241148902 1222.6702429448706 3 408.56427001953125 MULTI HCD FTMS 0 0 0 16679 416579.28125 0.14041911468524632 -4 0.1013641357421875 4 NaN NaN 1 {I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F} 8 -1 79.453 0 0 6.4983 0 0 303.1694813459 0 303.1694813459 0 67.23446970896833 0 0 0 2.4634679910804405 0 1.9436726795685342 0 {I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F} 6.4983 - 1481 NaN NaN 351201.2 NaN 13306 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16684 70.914 NaN 733380 35 0 89881 0.261 + 12055 KITDVIIGF 9 72 503.3036873900452 1004.5928218468904 2 503.303466796875 MULTI HCD FTMS 0 0 0 16679 184584.375 0.45566969605588475 -4 0.1013641357421875 5 Unmodified _KITDVIIGF_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9 55.50274090549119 0.023872834264864425 1 DV{I|L}{I|L}G{M(Oxidation (M))|F} 6 3 67.925 0 0 6.7614 0 0 342.22661484085927 0 342.22661484085927 0 55.70615965204567 0 0 0 2.774227503252014 0 0.3807196863200844 0 + DV{I|L}{I|L}G{M(Oxidation (M))|F} 6.7614 + + 138 NaN NaN 195591.2 NaN 13307 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16685 70.917 NaN 108710 35 0 3635.7 0.261 + 33236 YFFHIRQW 8 67 598.8022073522872 1195.5898617713742 2 598.801513671875 MULTI HCD FTMS 0 0 0 16679 50474.453125 0.3589270914779559 7 -0.22634124755859375 6 Unmodified _YFFHIRQW_ REV__ENSG00000167769|ENST00000301452|ACER1 5.760428011301431 0.5334459684533844 1 W 1 -1 18.495 0 0 1.5469 0 0 991.4982155084821 0 991.4982155084821 0 1.020599913279625 0 0 0 0.5 0 0 0 W 1.5469 + + 18 + NaN NaN 105023.9 NaN 13308 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16686 70.92 NaN 261270 35 0 31379 0.264 + 19483 NPYQFNFTSF 10 52 422.1937273626364 1263.5593526881094 3 422.19415283203125 MULTI HCD FTMS 0 0 0 16679 48782.00390625 0.4324215363372869 -4 0.1013641357421875 7 Unmodified _NPYQFNFTSF_ REV__ENSG00000116711|ENST00000367466|PLA2G4A 9.38312468134398 0.42334543440173333 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7403 0 0 1098.4802033734593 0 1098.4802033734593 0 16.505149978319906 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7403 + + 22 + NaN NaN 119102.3 NaN 13309 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16687 70.924 NaN 71909 35 0 13587 0.261 + -1 DMIHCPLF 8 42 496.22412019941333 NaN 0 496.2238464355469 PEAK HCD FTMS 0 0 0 16679 36608.27734375 0.7558751658769072 -1 0.01947784423828125 8 Oxidation (M) _DM(Oxidation (M))IHCPLF_ REV__ENSG00000145700|ENST00000506364|ANKRD31;REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 10.183394434864962 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83722.6 NaN 13310 3375 16679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16689 70.928 NaN 925800 35 0 104740 0.327 + 24128 RYAVEILTW 9 96 575.8162440995874 1149.6179352659747 2 575.816650390625 MULTI HCD FTMS 0 0 0 16688 332282.9375 0.14817789908803258 8 -0.2425537109375 1 Unmodified _RYAVEILTW_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 63.960520009940105 0.0120409805053046 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}TW 10 3 + 97.312 0 0 8.4647 8.4647 88.064 0 0 0 18.444218390360234 66.95764043784187 18.444218390360234 1.588709367037282 0 1.305462187404089 1.5228787452803376 1.1861818737241734 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RVE{I|L}{I|L}TW;[Y{I|L}]{[NV]|[RG]}E{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RD]{I|L}{I|L}TW;[Y{I|L}][RV]EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}[VP]{[CT]|[{M(Oxidation (M))|F}G]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}[TA]{[QN]|[E{I|L}]|[KN]}W 8.4647;8.3265;8.1535;8.0153;7.4578;6.2127;5.9121;5.705;5.5522;5.5499 -;-;-;-;-;-;-;-;-;- 5648 NaN NaN 228516.8 NaN 13311 3376 16688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16690 70.933 NaN 488480 35 0 24744 0.261 + 32553 WIFLWALF 8 105 548.3054134943716 NaN 0 548.291259765625 PEAK HCD FTMS 0 0 0 16688 28549.26953125 1 0 0 2 Unmodified _WIFLWALF_ ENSG00000205269|ENST00000379426|TMEM170B;TMEM170B|p.G67Efs*17|1|0.18|ENSG00000205269|chr6:11565766-11565766|G/-|frameshift_variant 11.114462752807354 0.38822285293237185 1 DVCK 4 8 17.652 0 0 1.6126 0 0 131.12308493366442 515.2528170221311 646.3759019557956 0 0 0 0 0 0.2614393726401688 0 0 0 DVCK 1.6126 - 2029 + NaN NaN 155616.8 NaN 13312 3376 16688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16691 70.936 NaN 180290 35 0 15442 0.261 + 6051 FPDWREDVL 9 63 588.7877329764015 1175.5609130196028 2 588.7885131835938 MULTI HCD FTMS 0 0 0 16688 105389.5546875 0.2508765891863616 16 -0.473663330078125 3 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 26.020703789607367 0.13554323117744113 1 NWDPE 5 7 38.175 0 0 3.2474 0 0 516.298143455275 0 516.298143455275 0 17.206225184280797 0 0 0 0.9247425010840047 0 0 0 NWDPE 3.2474 - 92 NaN NaN 108649.5 NaN 13313 3376 16688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16692 70.94 NaN 624020 35 0 127890 0.261 -1 KYMDINFDF 9 97 604.7686419564312 1207.5227309796624 2 604.7694091796875 MULTI HCD FTMS 0 0 0 16688 41397.90625 0.39493345818727166 28 -0.8134918212890625 4 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 18.373094154950223 0.20161688160436167 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 + 48.382 0 0 4.0067 4.0067 84.766 0 0 0 2.4156676393121757 19.62144052772942 2.4156676393121757 9.208187539523749 0 1.1549471895720984 1.6989700043360187 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]{M(Oxidation (M))|F}ND{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]{M(Oxidation (M))|F}GGD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]K[YE]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}]{[MG]|[TS]}{[DS]|[MA]|[CV]|TT}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]K[YE]GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]K[YE]{M(Oxidation (M))|F}ND{M(Oxidation (M))|F};[Y{I|L}]{[MG]|[TS]}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}ND{M(Oxidation (M))|F} 4.0067;3.2442;3.2409;2.4783;1.8999;1.7541;1.5719;1.1373;1.134;0.9882 -;-;-;-;-;-;-;-;-;- 1132 NaN NaN 188716.8 NaN 13314 3376 16688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16693 70.943 NaN 456550 35 0 29912 0.262 -1 DPNLEFVAM 9 67 526.2420242273795 1050.4694955215589 2 526.2431030273438 MULTI HCD FTMS 0 0 0 16688 33482.0390625 0.24696140218401488 -8 0.2027740478515625 5 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 31.26834338654808 0.10542797264966089 1 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 56.81 0 0 5.4081 0 0 439.2089497225339 0 439.2089497225339 0 43.57840941039747 0 0 0 2.274227503252014 0 0 0 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.4081 + + 97 + NaN NaN 157259.3 NaN 13315 3376 16688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16695 70.948 NaN 17272000 35 0 1728900 0.327 + 4711 EYQKVWNLF 9 115 613.8136951048748 1225.6128372765495 2 613.8143920898438 MULTI HCD FTMS 0 0 0 16694 14051892 1 0 0 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 143.21322497773306 1.6000761055044888E-05 1 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 87.864 0 0 7.169 7.169 88.452 0 0 0 7.236607226101555 14.973024840566467 7.236607226101555 7.236607226101555 0 2.142159058960253 1.154901959985743 2.6747425010840047 0.3054621874040891 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};[YQ]KEVWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWGG{I|L}{M(Oxidation (M))|F} 7.169;6.5785;6.4177;6.4177;5.8308;5.7896;5.6699;5.2937;5.1798;5.0383 +;-;-;-;-;-;-;-;-;- + 8604 NaN NaN 637621.9 NaN 13316 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16696 70.952 NaN 1458200 35 0 104840 0.261 + 9921 IDFQNFTNIF 10 109 629.8087122251125 1257.6028715170248 2 629.80859375 MULTI HCD FTMS 0 0 0 16694 1130255.5 1 0 0 2 Unmodified _IDFQNFTNIF_ tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1 36.506200033944 0.17572556831573002 1 {[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}TWN{I|L} 8 6 67.146 0 0 5.3392 0 0 0 180.06886697890255 180.06886697890255 14.274648366915358 0 0 0 0 0 1.6989700043360187 0.9049471895720984 0.7742275032520141 {[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}TWN{I|L} 5.3392 - 3479 NaN NaN 311232.2 NaN 13317 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16697 70.956 NaN 776400 35 0 116120 0.261 + -1 TTCIFLSDM 9 79 552.2392988803797 1102.4640448275593 2 552.2581176757812 MULTI HCD FTMS 0 0 0 16694 48141.80859375 0.7741322444660076 4 -0.14780426025390625 3 Carbamidomethyl (C),Oxidation (M) _TTC(Carbamidomethyl (C))IFLSDM(Oxidation (M))_ REV__OR2T11|p.T68S|1|0.44|ENSG00000279301|chr1:248626926-248626926|G/C|missense_variant 21.74664581756881 0.17247014374749275 1 M{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F} 9 -1 + 41.238 0 0 3.7405 3.7405 59.815 0 0 0 14.638787285696964 7.269987279362624 7.269987279362624 0 0 0 0 1.4916440611282626 0 M{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};M[KC]{I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};M{I|L}[KC]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};[YT][NP]{M(Oxidation (M))|F}TDV{M(Oxidation (M))|F};M[WY]{M(Oxidation (M))|F}[NP]V{M(Oxidation (M))|F};[YT][NP]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}{M(Oxidation (M))|F}{I|L}SQ{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}DDN;[YT][NP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F}[{I|L}T];[YT]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[NP]V{M(Oxidation (M))|F} 3.7405;3.7405;3.0422;2.5372;1.712;1.702;1.6074;1.1159;0.99612;0.75852 -;-;-;-;-;-;-;-;-;- 906 + NaN NaN 204415.8 NaN 13318 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16698 70.959 NaN 340910 35 0 22906 0.261 + 22962 QYVYWLHML 9 63 634.8103877121284 1267.6062224910568 2 634.8114013671875 MULTI HCD FTMS 0 0 0 16694 126049.4375 0.21460983623583224 17 -0.5165557861328125 4 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 56.541270873467816 0.02242000196051205 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 10 8 + 54.754 0 0 4.3195 4.3195 86.004 0 0 0 5.853933431708427 10.420430854003655 5.853933431708427 9.515449934959719 0 1.110924374808178 1.3979400086720375 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]V{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[YD]|[{M(Oxidation (M))|F}M]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}AA{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY[VS]{I|L}H{[YD]|[{M(Oxidation (M))|F}M]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[YD]|[{M(Oxidation (M))|F}M]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[YD]|[{M(Oxidation (M))|F}M]};[YQ]V[WC(Carbamidomethyl (C))][{I|L}T][W{I|L}] 4.3195;3.5688;3.5688;2.641;2.2396;2.1032;1.5654;1.4889;1.4889;0.27977 -;-;-;-;-;-;-;-;-;- 568 NaN NaN 129143.9 NaN 13319 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16699 70.963 NaN 172510 35 0 17004 0.264 + 3862 EPKSQKPFRKM 11 39 459.25512952329814 1374.7435591700944 3 459.25567626953125 MULTI HCD FTMS 0 0 0 16694 60514.7734375 0.5514115187401045 1 -0.0361480712890625 5 Unmodified _EPKSQKPFRKM_ ENSG00000088970|ENST00000619189|KIZ;KIZ|p.S376Rfs*12|1|0.15|ENSG00000088970|chr20:21162934-21162935|-/AATTACTCATCAGT|frameshift_variant;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;nc|ENSG00000088970|Q2M2Z5-5|KIZ 4.11662792887243 0.40086653484894175 1 E{M(Oxidation (M))|F} 2 9 20.969 0 0 1.5253 0 0 0 1095.6117710873511 1095.6117710873511 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.5253 - 9 + NaN NaN 106908.7 NaN 13320 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16700 70.966 NaN 323700 35 0 28528 0.261 -1 PAAACSCSWRN 11 68 640.2691012146076 1278.5236494960152 2 640.7866821289062 MULTI HCD FTMS 0 0 0 16694 57907.046875 0.9357173430209633 1 -0.0361480712890625 6 2 Carbamidomethyl (C) _PAAAC(Carbamidomethyl (C))SC(Carbamidomethyl (C))SWRN_ ENST00000264235.12_2_3:119812650-119812956:-|nuORF 4.897010918128616 0.3974440401582579 1 [YV][WH][WD]MPG 9 -1 14.911 0 0 1.1663 0 0 0 104.0235199494679 104.0235199494679 -4.296743179485887 0 -4.296743179485887 0 0 0 1.6989700043360187 0 0 [YV][WH][WD]MPG 1.1663 - 102 NaN NaN 125307.3 NaN 13321 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16701 70.969 NaN 303090 35 0 24326 0.261 -1 LMATTLMMW 9 69 557.2609521816373 1112.5073514300746 2 557.7451782226562 MULTI HCD FTMS 0 0 0 16694 15674.2001953125 0.4179605167150552 1 -0.0361480712890625 7 Oxidation (M) _LMATTLM(Oxidation (M))MW_ ENST00000442738.6_1_22:38349729-38352826:+|nuORF 8.593279151180031 0.2858735984551981 1 W 1 -1 20.485 0 0 1.8413 0 0 908.4176735509715 0 908.4176735509715 0 1.187718690714373 0 0 0 0.5 0 0 0 W 1.8413 + + 113 + NaN NaN 134142 NaN 13322 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16702 70.973 NaN 77156 35 0 7825.3 0.263 + 12161 KKKKKKVKKI 10 47 419.31556432306473 NaN 0 419.315185546875 PEAK HCD FTMS 0 0 0 16694 60624.78125 0.4679723060709133 -52 1.4182662963867188 8 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94177.7 NaN 13323 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16703 70.976 NaN 141950 35 0 15917 0.261 -1 MPSLENLDL 9 42 524.2550381239223 1046.4955233146445 2 524.2555541992188 MULTI HCD FTMS 0 0 0 16694 69567.5859375 1 0 0 9 Oxidation (M) _M(Oxidation (M))PSLENLDL_ ENSG00000277586|ENST00000610854|NEFL 12.240655878213236 0.2545997876781172 1 N{I|L}D{I|L} 4 -1 33.047 0 0 3.1579 0 0 573.2494374005875 0 573.2494374005875 0 7.078343878162343 0 0 0 0.5 0 0 0 N{I|L}D{I|L} 3.1579 + + 20 NaN NaN 97030.3 NaN 13324 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16704 70.979 NaN 165380 35 0 30817 0.261 + 33763 YLFIAWPVT 9 48 555.3028525018592 1108.5911520705183 2 555.3035888671875 MULTI HCD FTMS 0 0 0 16694 36224.0625 0.8062390551624161 -1 0.0194854736328125 10 Unmodified _YLFIAWPVT_ ENST00000378891.9_3_1:1270760-1271384:-|nuORF 8.593279151180031 0.2858735984551981 1 V 1 8 8.9794 0 0 0.80998 0 0 315.17851540756004 691.3229464166624 1006.5014618242224 0 0 0 0 0 0.5 0 0 0 + V 0.80998 + + 27 + NaN NaN 104182.3 NaN 13325 3377 16694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16706 70.984 NaN 2037100 35 0 106630 0.326 + 29715 VDGQYVWFNI 10 112 620.8043883709606 1239.5942238087212 2 620.802978515625 MULTI HCD FTMS 0 0 0 16705 1247090.75 0.8208860810528168 1 -0.03612518310546875 1 Unmodified _VDGQYVWFNI_ ENSG00000141385|ENST00000269143|AFG3L2 38.175570920033316 0.1612389583597779 1 EKVWN{I|L}{M(Oxidation (M))|F} 7 7 64.791 0 0 5.2268 0 0 305.1009693830094 0 305.1009693830094 0 29.864488532220008 0 0 0 2.0669015600442577 0 2.610924374808178 0 EKVWN{I|L}{M(Oxidation (M))|F} 5.2268 - 6620 NaN NaN 400565.8 NaN 13326 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16707 70.989 NaN 382000 35 0 14725 0.261 -1 YLCESQVNLF 10 82 636.7995440409484 1271.5845351486967 2 636.7984008789062 MULTI HCD FTMS 0 0 0 16705 242798.359375 1 0 0 2 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))ESQVNLF_ ENST00000471743.1_1_2:26435372-26437931:-|nuORF 27.628801355627647 0.2527626205058048 1 N{M(Oxidation (M))|F}A[DV]T{I|L}TN 9 -1 39.849 0 0 3.1338 0 0 278.16282851386876 0 278.16282851386876 0 16.111490184528016 0 0 0 1.1747425010840047 0 0.4247425010840047 0.2742275032520141 N{M(Oxidation (M))|F}A[DV]T{I|L}TN 3.1338 - 890 NaN NaN 139489.7 NaN 13327 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16708 70.992 NaN 191760 35 0 12278 0.261 + 11544 IYSLEMKMSF 10 72 624.8036280452131 1247.5927031572262 2 624.804443359375 MULTI HCD FTMS 0 0 0 16705 84641.3125 0.7048848107600697 1 -0.03612518310546875 3 Unmodified _IYSLEMKMSF_ ENSG00000166105|ENST00000431683|GLB1L3;nc|ENSG00000166105|Q8NCI6-2|GLB1L3 8.745405648335112 0.42901288225909884 1 EYQKVW[PA]{NN|[MP]|[D{I|L}]|[EV]} 10 9 + 41.119 0 0 3.2959 3.2959 83.329 0 0 0 23.583493856482246 2.7545373444029053 2.7545373444029053 9.164539485499251 0 0.3494850021680094 0 0 0 EYQKVW[PA]{NN|[MP]|[D{I|L}]|[EV]};EYQKV{[DA]|[EG]}[PA]{NN|[MP]|[D{I|L}]|[EV]};EY[AG]KVW[PA]{NN|[MP]|[D{I|L}]|[EV]};E{M(Oxidation (M))|F}[SG]KVW[PA]{NN|[MP]|[D{I|L}]|[EV]};[Y{I|L}]Q[SG]VW[PA]{NN|[MP]|[D{I|L}]|[EV]};[{M(Oxidation (M))|F}V][PA]WV[WE][KS] 3.2959;2.5613;2.5613;2.3835;2.0476;1.155 -;-;-;-;-;- 161 + NaN NaN 112664.1 NaN 13328 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16709 70.995 NaN 279570 35 0 19096 0.261 + 13193 KYLTQVDILL 10 78 603.3607979585678 1204.7070429839355 2 603.3622436523438 MULTI HCD FTMS 0 0 0 16705 50766.7109375 0.5884845154362037 1 -0.03612518310546875 4 Unmodified _KYLTQVDILL_ ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant;nc|ENSG00000123485|Q8NCD3-2|HJURP 21.590151480376914 0.30916502439568466 1 D{I|L}{I|L}{I|L} 4 6 34.399 0 0 2.8554 0 0 732.4196034162125 0 732.4196034162125 0 21.858411854854506 0 0 0 0.8252574989159953 0 0.3494850021680094 0 + D{I|L}{I|L}{I|L} 2.8554 + + 479 NaN NaN 125499.4 NaN 13329 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16710 70.999 NaN 212310 35 0 16585 0.261 + 28009 TFSFQGTENFI 11 60 645.8034037036042 NaN 0 645.8023681640625 PEAK HCD FTMS 0 0 0 16705 105675.890625 1 0 0 5 Unmodified _TFSFQGTENFI_ REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant 11.494710602746466 0.3095129597915146 1 {I|L}T{I|L} 3 -1 16.414 0 0 1.2728 0 0 663.1892526202959 296.16184412174067 959.3510967420366 0 0 0 0 0 0 0 0.7742275032520141 0 {I|L}T{I|L} 1.2728 - 67 + NaN NaN 121462.2 NaN 13330 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16711 71.002 NaN 102200 35 0 20412 0.264 + 20849 PIAYDGEVL 9 35 488.75292295719345 975.4912929811869 2 488.7529602050781 MULTI HCD FTMS 0 0 0 16705 19991.69921875 0.11452446971950979 8 -0.24205780029296875 6 Unmodified _PIAYDGEVL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 10.823927491677226 0.26684000660059787 1 H{[DA]|[EG]}V{I|L} 5 5 27.218 0 0 2.7902 0 0 422.19725234199376 0 422.19725234199376 0 27.21848749616356 0 0 0 0.8494850021680094 0 0 0 H{[DA]|[EG]}V{I|L} 2.7902 - 8 NaN NaN 92340.2 NaN 13331 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16712 71.005 NaN 231690 35 0 19336 0.261 -1 LEVPDMNI 8 57 473.73125752503404 945.4479621168681 2 473.7308654785156 MULTI HCD FTMS 0 0 0 16705 58692.40234375 0.10892620807807699 -33 0.8828048706054688 7 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 1 {I|L}N{I|L} 3 -1 28.188 0 0 2.9814 0 0 587.2265859638604 0 587.2265859638604 0 14.999999999999998 0 0 0 0.5 0 0 0 {I|L}N{I|L} 2.9814 - 79 NaN NaN 108922.3 NaN 13332 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16713 71.009 NaN 239050 35 0 40606 0.261 + 30745 VPLDQTVTL 9 40 493.28173561315367 984.5489182931074 2 493.2818908691406 MULTI HCD FTMS 0 0 0 16705 38028.20703125 0.16812935597988088 -3 0.08516693115234375 8 Unmodified _VPLDQTVTL_ REV__ENSG00000180304|ENST00000326005|OAZ2;REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF 36.12702656103203 0.08312389501731911 1 T{I|L} 2 -1 30.217 0 0 3.0691 0 0 752.4071912026615 0 752.4071912026615 0 7.808487663269972 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 3.0691 + + 18 NaN NaN 130458.1 NaN 13333 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16714 71.012 NaN 324870 35 0 23493 0.261 -1 MPSLPEMMF 9 75 557.7339489244996 1113.453344915799 2 557.7344970703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Oxidation (M) _MPSLPEM(Oxidation (M))M(Oxidation (M))F_ ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 32.664 0 0 2.9336 0 0 654.3066273419937 0 654.3066273419937 0 4.995163750557001 0 0 0 1.1861818737241734 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9336 + + 259 NaN NaN 128976.2 NaN 13334 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16715 71.015 NaN 140200 35 0 11136 0.261 + 19035 NDITFSYLF 9 72 560.2727793713502 NaN 0 560.2715454101562 PEAK HCD FTMS 0 0 0 16705 29022.4375 0.46153836596867814 3 -0.11165618896484375 10 Unmodified _NDITFSYLF_ REV__ENSG00000111728|ENST00000396037|ST8SIA1;REV__nc|ENSG00000111728|Q92185-2|ST8SIA1 19.256988751693697 0.19238547928067054 1 Y{I|L} 2 -1 16.766 0 0 1.4989 0 0 677.3041819343035 162.05584131412346 839.360023248427 0 0 0 0 0 0.8807196863200843 0 0 0 Y{I|L} 1.4989 + + 90 + NaN NaN 103311.5 NaN 13335 3378 16705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16717 71.02 NaN 1813000 35 0 93133 0.327 + -1 ELCTSRTNLF 10 122 620.8043883709606 1239.5942238087212 2 620.802978515625 MULTI HCD FTMS 0 0 0 16716 1084461.875 0.7138371113889984 2 -0.075531005859375 1 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))TSRTNLF_ REV__ENST00000480234.1_1_21:46285323-46293531:-|nuORF 43.77239144664712 0.11267038882370725 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DATWN{I|L}{M(Oxidation (M))|F} 10 -1 + 73.594 0 0 5.9369 5.9369 86.644 0 0 0 9.752789609442985 22.839322000954283 9.752789609442985 8.296896906561031 0 1.5356668758921828 1.6989700043360187 2.1861818737241734 0 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DATWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DS[RD]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DATWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}T{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}T[VS]N{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[DG]KVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DR{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}KVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DS[RD]GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}DSW[QA]{I|L}{M(Oxidation (M))|F} 5.9369;5.2676;5.1976;5.0201;5.0201;4.8049;4.7624;4.7411;4.5283;4.3188 -;-;-;-;-;-;-;-;-;- 8832 NaN NaN 356965.8 NaN 13336 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16718 71.025 NaN 332700 35 0 31195 0.262 + 1263 AYLVNTYAL 9 70 514.2765773803314 1026.5386018274628 2 514.2765502929688 MULTI HCD FTMS 0 0 0 16716 159564.6875 0.40782915818698223 2 -0.075531005859375 2 Unmodified _AYLVNTYAL_ ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF 103.35351024395868 0.004027461563756449 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L} 9 0 + 103.14 0 0 10.047 10.047 96.588 0 0 0 17.772336398234003 93.17455234239091 17.772336398234003 17.703037561203843 0 2.524227503252014 1.3010299956639813 0.6549471895720984 0.8494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGGTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}VYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YK]{[DA]|[EG]}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Y{I|L}][NS]A{I|L};Q{I|L}{M(Oxidation (M))|F}[TA]TYA{I|L} 10.047;8.3228;7.3199;5.4945;5.2784;2.8343 +;-;-;-;-;- + 418 NaN NaN 125178.3 NaN 13337 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16719 71.028 NaN 726010 35 0 143100 0.261 + 16909 LYGESLYIW 9 78 572.2896840640939 1142.5648151949877 2 572.2894287109375 MULTI HCD FTMS 0 0 0 16716 240738.84375 0.03139578278693228 19 -0.552398681640625 3 Unmodified _LYGESLYIW_ REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF 53.57557251787612 0.02656881086235134 1 [Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 10 -1 + 101.34 0 0 8.8692 8.8692 91.037 0 0 0 23.362132466118638 16.53212513775344 16.53212513775344 6.977437731477423 0 2.416386562212267 2 0.3807196863200844 0 [Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]D{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YG]{I|L}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]GSE{I|L}WY{I|L};[Y{I|L}]GV{[ET]|[MV]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YG]{I|L}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}{[DA]|[EG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}[EP]{M(Oxidation (M))|F} 8.8692;8.2585;8.0452;7.8745;6.8245;6.5982;6.4807;6.3517;5.8627;5.3504 -;-;-;-;-;-;-;-;-;- 1787 NaN NaN 197308.1 NaN 13338 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16720 71.032 NaN 1424900 35 0 102690 0.261 + 6318 FPFSDKLGEL 10 118 576.8002923225939 1151.5860317119877 2 576.8004760742188 MULTI HCD FTMS 0 0 0 16716 295204.84375 0.9292341164502155 3 -0.10504913330078125 4 Unmodified _FPFSDKLGEL_ CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant;CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 67.08073823543168 0.021044403604576784 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[DV]K{M(Oxidation (M))|F}PE 10 7 + 58.623 0 0 5.0906 5.0906 83.759 0 0 0 1.9365226964635696 8.890427122153802 1.9365226964635696 4.771212547196626 0 0.7302046884880937 1.6989700043360187 1.1688265215345564 0.25 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[DV]K{M(Oxidation (M))|F}PE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[DV]K{M(Oxidation (M))|F}PE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AA[RD]MKN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[DV]KRCN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}A[RD]MKN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[DV]KRCN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RD]AAMKN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RD]{I|L}C(Carbamidomethyl (C))KN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RD][KG]{I|L}CN;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}C(Carbamidomethyl (C))KN 5.0906;4.6763;4.6703;4.6195;4.256;4.2052;4.1482;4.1176;4.0514;3.7653 -;-;-;-;-;-;-;-;-;- 12605 NaN NaN 295820.4 NaN 13339 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16721 71.035 NaN 291800 35 0 39746 0.261 -1 YPEEMIVAL 9 68 540.7675798128076 1079.5206066924152 2 540.7677612304688 MULTI HCD FTMS 0 0 0 16716 95824.109375 0.6449744728535137 2 -0.075531005859375 5 Oxidation (M) _YPEEM(Oxidation (M))IVAL_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2 15.847184025352803 0.2234401846867398 1 {I|L}VA{I|L} 4 -1 33.276 0 0 3.0825 0 0 665.2382069318375 0 665.2382069318375 0 12.307131330965717 0 0 0 0.8494850021680094 0 0 0 {I|L}VA{I|L} 3.0825 + + 40 NaN NaN 126225.7 NaN 13340 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16722 71.038 NaN 232220 35 0 29247 0.261 + 10612 IPPDGEFEL 9 65 508.74992618625265 1015.4852994393053 2 508.750732421875 MULTI HCD FTMS 0 0 0 16716 103893.9296875 1 0 0 6 Unmodified _IPPDGEFEL_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000161203|Q96CW1-2|AP2M1 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}E{I|L} 3 6 33.94 0 0 3.3423 0 0 608.2809449024026 0 608.2809449024026 0 18.99166239860314 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}E{I|L} 3.3423 + + 99 NaN NaN 114356.6 NaN 13341 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16723 71.041 NaN 169780 35 0 13244 0.261 + 23119 RFCDNVWTF 9 45 594.268495335413 1186.522437737626 2 594.26904296875 MULTI HCD FTMS 0 0 0 16716 49318.08203125 0.1583357311759572 30 -0.8557357788085938 7 Unmodified _RFCDNVWTF_ ENSG00000140307|ENST00000396060|GTF2A2;ENST00000267869.8_1_15:59931333-59949661:-|nuORF 17.11289562659939 0.2125047172822487 1 WT{M(Oxidation (M))|F} 3 6 36.198 0 0 3.0508 0 0 734.3179666363126 0 734.3179666363126 0 36.197887582883936 0 0 0 1 0 0 0 + WT{M(Oxidation (M))|F} 3.0508 + + 15 NaN NaN 115987.9 NaN 13342 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16724 71.045 NaN 79796 35 0 12017 0.262 -1 VYAICFIL 8 42 499.77374254107264 997.5329321489453 2 499.7745666503906 MULTI HCD FTMS 0 0 0 16716 14813.4755859375 0.23357366780620772 2 -0.075531005859375 8 Carbamidomethyl (C) _VYAIC(Carbamidomethyl (C))FIL_ ENSG00000179820|ENST00000391770|MYADM 11.114462752807354 0.5120171699125776 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6033 0 0 753.3543568341812 0 753.3543568341812 0 22.47425010840047 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6033 + + 5 NaN NaN 89727 NaN 13343 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16725 71.048 NaN 133230 35 0 34561 0.262 + -1 NRIRITMYF 9 48 410.55343159526205 1228.6384653859861 3 410.88787841796875 MULTI HCD FTMS 0 0 0 16716 14159.484375 0.029280276838969416 41 -1.1693344116210938 9 Oxidation (M) _NRIRITM(Oxidation (M))YF_ REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1 4.189502756095605 0.319257502753388 1 Y{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.4235 0 0 900.4984501952283 0 900.4984501952283 0 22.697953115119063 0 0 0 0.8807196863200843 0 0 0 Y{M(Oxidation (M))|F} 2.4235 + + 13 NaN NaN 112625.3 NaN 13344 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16726 71.051 NaN 66259 35 0 18923 0.261 -1 MLWAICVA 8 37 482.2435550601572 NaN 0 481.8346252441406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _MLWAIC(Carbamidomethyl (C))VA_ ENSG00000000971|ENST00000367429|CFH;ENST00000496761.1_1_1:196621247-196642313:+|nuORF;nc|ENSG00000000971|P08603-2|CFH;nc|ENSG00000000971|P08603|CFH 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87104.5 NaN 13345 3379 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16728 71.056 NaN 3882900 35 0 822190 0.327 -1 0 88 408.5640241148902 1222.6702429448706 3 408.5644226074219 MULTI HCD FTMS 0 0 0 16727 2009737.125 0.6774352939391948 1 -0.0394287109375 1 NaN NaN 1 {I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F} 8 -1 87.103 0 0 7.124 0 0 303.169725486525 0 303.169725486525 0 60.53386823368612 0 0 0 2.75 0 1.8737125054200234 0 {I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F} 7.124 - 1179 NaN NaN 493396.4 NaN 13346 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16729 71.061 NaN 1214700 35 0 100760 0.261 + 1270 AYLYKYFAL 9 109 576.3099656705185 1150.605378407837 2 576.3091430664062 MULTI HCD FTMS 0 0 0 16727 388738.28125 0.8898966501248683 1 -0.0394287109375 2 Unmodified _AYLYKYFAL_ ENSG00000136156|ENST00000647800|ITM2B;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;nc|ENSG00000136156|Q9Y287-2|ITM2B 71.13359017698441 0.008721403657255008 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YKY{M(Oxidation (M))|F}A{I|L} 9 0 + 77.423 0 0 6.7289 6.7289 84.525 0 0 0 0.37421961611114796 0.37421961611114796 0.37421961611114796 0.37421961611114796 0 2.138210492164445 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YKY{M(Oxidation (M))|F}A{I|L};AY{I|L}[KG]EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}C(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YK{M(Oxidation (M))|F}YA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE[KG]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}C(Carbamidomethyl (C)){I|L}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}EAC(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}C(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}EA{I|L}C(Carbamidomethyl (C))K 6.7289;6.6964;6.6872;6.6183;6.5759;6.2947;6.2725;6.2464;6.2182;6.1776 +;-;-;-;-;-;-;-;-;- + 10680 NaN NaN 268092.4 NaN 13347 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16730 71.064 NaN 183820 35 0 12605 0.261 + 4499 EYISIALRI 9 56 539.3187701384826 1076.622987343765 2 539.31884765625 MULTI HCD FTMS 0 0 0 16727 67511.6875 0.09165741977948837 10 -0.29349517822265625 3 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 38.175570920033316 0.07371992880350783 1 [YE]{I|L}S{I|L}A{I|L}R{I|L} 9 0 + 53.056 0 0 4.928 4.928 91.048 0 0 0 33.8553779588527 14.647642715192504 14.647642715192504 53.05638763257846 0 0.7742275032520141 1.2218487496163564 0 0.3252574989159953 + + [YE]{I|L}S{I|L}A{I|L}R{I|L} 4.928 + + 91 + NaN NaN 110329.7 NaN 13348 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16731 71.068 NaN 143500 35 0 24346 0.261 + 3854 EPISVEVQL 9 39 507.2792494925505 1012.543946051901 2 507.2793273925781 MULTI HCD FTMS 0 0 0 16727 87232.5546875 0.2498990848569901 10 -0.29349517822265625 4 Unmodified _EPISVEVQL_ ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 38.175570920033316 0.07371992880350783 1 EVQ{I|L} 4 5 50.767 0 0 5.0138 0 0 525.277635642775 0 525.277635642775 0 45.28278186909045 0 0 0 1.5 0 0.805462187404089 0 + EVQ{I|L} 5.0138 + + 75 NaN NaN 104292.2 NaN 13349 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16732 71.071 NaN 418720 35 0 38489 0.261 + 29423 TYTDRVFFL 9 74 581.3005047013379 1160.5864564694757 2 581.3008422851562 MULTI HCD FTMS 0 0 0 16727 178336.09375 0.03548810672654048 28 -0.7869491577148438 5 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 57.72198328787511 0.020768266150574023 1 [YT]T[RD]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 53.534 0 0 4.6127 4.6127 83.438 0 0 0 35.84340043851533 8.708720527710923 8.708720527710923 6.020599913279625 0 2.1861818737241734 1.6989700043360187 0 0 + + [YT]T[RD]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]E{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[{I|L}P]{[QS]|[NT]}V{[QD]|[EN]|[WG]|[KD]|[RS]}D{M(Oxidation (M))|F}{I|L};[YT][{I|L}A][YR]D{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}[YK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[{I|L}P]{[QS]|[NT]}V[RD]T[{M(Oxidation (M))|F}V];[{I|L}P]{[QS]|[NT]}V{[QD]|[EN]|[WG]|[KD]|[RS]}E[{M(Oxidation (M))|F}V];[YT]E[YR]{[MS]|[{M(Oxidation (M))|F}A]}V{I|L};[YT][{I|L}A][YR]E[{M(Oxidation (M))|F}V] 4.6127;4.0939;3.6616;3.607;2.6399;1.768;1.2492;0.87754;0.50058 +;-;-;-;-;-;-;-;- + 265 + NaN NaN 144086.7 NaN 13350 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16733 71.074 NaN 562730 35 0 103300 0.261 + 19021 NAVYTFETL 9 78 529.2636621988655 1056.512771464531 2 529.2637329101562 MULTI HCD FTMS 0 0 0 16727 90133.1796875 0.28880225329423975 4 -0.11469268798828125 6 Unmodified _NAVYTFETL_ ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2 93.16586880292088 0.00444300900000894 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}T{M(Oxidation (M))|F}ET{I|L} 9 2 + 65.134 0 0 6.165 6.165 83.375 0 0 0 3.22051538364164 11.721675119240516 3.22051538364164 0.22878745280337398 0 1.7302046884880937 1.6989700043360187 0.6549471895720984 0.2742275032520141 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}T{M(Oxidation (M))|F}ET{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[NS]{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}VYT{M(Oxidation (M))|F}ET{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}TE{M(Oxidation (M))|F}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[NS]E{M(Oxidation (M))|F}T{I|L};{[QG]|[NA]}VYTE{M(Oxidation (M))|F}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][Q{I|L}]ET{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][QA]ET{I|L};{[QG]|[NA]}V[HS]T{[NV]|[RG]}C{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[HS][NS]{I|L}C{I|L} 6.165;6.1433;5.8601;5.0222;5.0006;4.7174;3.5899;3.5899;1.9275;1.5888 -;-;+;-;-;-;-;-;-;- + 351 NaN NaN 166615.9 NaN 13351 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16734 71.078 NaN 1091300 35 0 199590 0.261 + 16232 LPWSKAWEL 9 104 565.3057164389593 1128.5968799447185 2 565.3057861328125 MULTI HCD FTMS 0 0 0 16727 311072.75 0.22782594652908514 -5 0.1573944091796875 7 Unmodified _LPWSKAWEL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 96.93554129104106 0.004344229100022454 1 {I|L}PWSKAWE{I|L} 9 0 + 94.261 0 0 8.3521 8.3521 90.465 0 0 0 16.428768455400515 7.4101308973638425 7.4101308973638425 7.4101308973638425 0 2.778659694992122 1.6989700043360187 1.555462187404089 0.3807196863200844 + + {I|L}PWSKAWE{I|L};[{I|L}P]WSKAWE{I|L};[{I|L}P]WSKAEW{I|L};{I|L}PWSKA[PS]P{M(Oxidation (M))|F};[WP]{I|L}SKAWE{I|L};[WP]{I|L}SKAEW{I|L};[WP]S{I|L}KAWE{I|L};[{I|L}P]W[KT]GWE{I|L};[WP]S{I|L}KAEW{I|L};[{I|L}P]W[KT]WGE{I|L} 8.3521;7.6955;7.1609;6.8145;6.563;6.0283;5.5865;5.5052;5.0519;5.0345 +;+;-;-;-;-;-;-;-;- + 2025 + NaN NaN 255324.6 NaN 13352 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16735 71.081 NaN 291060 35 0 47690 0.261 -1 TPEIMAPIL 9 58 500.7725209121171 999.5304888910342 2 500.7730407714844 MULTI HCD FTMS 0 0 0 16727 67725.8046875 0.3626812506129127 -4 0.12786102294921875 8 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 34.10243960390752 0.09241788333544565 1 [{I|L}P]{[ET]|[MV]}{M(Oxidation (M))|F}AP{I|L}{I|L} 9 -1 + 55.824 0 0 5.5851 5.5851 90.738 0 0 0 5.51924358097537 27.99349368937584 5.51924358097537 24.23516269895728 0 1.774227503252014 1.3979400086720375 0 0 [{I|L}P]{[ET]|[MV]}{M(Oxidation (M))|F}AP{I|L}{I|L};[{I|L}P]{[ET]|[MV]}{M(Oxidation (M))|F}P[{I|L}A]{I|L} 5.5851;3.1604 -;- 83 NaN NaN 128030 NaN 13353 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16736 71.084 NaN 102370 35 0 8380.1 0.261 -1 LYCPACLV 8 48 469.7274974306773 NaN 0 469.7271728515625 PEAK HCD FTMS 0 0 0 16727 10924.6318359375 0.2850207856741247 1 -0.0394287109375 9 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))PACLV_ ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF;HELZ2|p.T48S|1|0.53|ENSG00000130589|chr20:63572243-63572243|G/C|missense_variant;nc|ENSG00000130589|Q9BYK8|HELZ2 6.354104778181461 0.38822285293237185 1 SV 2 -1 9.464 0 0 1.0096 0 0 132.09859730100465 616.2184542291624 748.317051530167 0 0 0 0 0 0 0 0 0 SV 1.0096 - 25 + NaN NaN 102030.7 NaN 13354 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16737 71.088 NaN 187620 35 0 30572 0.261 -1 0 73 542.1837582293517 3788.2353723392616 7 542.3424682617188 MULTI HCD FTMS 0 0 0 16727 28577.259765625 1 0 0 10 NaN NaN 1 [Y{I|L}]D 3 -1 18.952 0 0 0.5003 0 0 0 3394.036006454749 3394.036006454749 5.853481135844877 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]D 0.5003 - 75 NaN NaN 113779.4 NaN 13355 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16738 71.091 NaN 213580 35 0 20525 0.261 + 10300 ILDPHVVLL 9 76 509.8183259944046 1017.6220990556092 2 509.81878662109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _ILDPHVVLL_ ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF 23.1484247019978 0.1603590852062899 1 {I|L}{I|L} 2 7 14.825 0 0 1.4569 0 0 773.4428578107437 0 773.4428578107437 0 1.7265113686835143 0 0 0 0.28872548999643577 0 0 0 + {I|L}{I|L} 1.4569 + + 171 NaN NaN 107641.2 NaN 13356 3380 16727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16740 71.096 NaN 6936800 35 0 675960 0.327 + 4712 EYQKVWNLF 9 124 613.8136951048748 1225.6128372765495 2 613.8140258789062 MULTI HCD FTMS 0 0 0 16739 4045082.25 0.2878674451810475 4 -0.0981597900390625 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 143.21322497773306 1.6000761055044888E-05 1 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 83.159 0 0 6.7851 6.7851 87.695 0 0 0 7.054396580803001 13.821909710751612 7.054396580803001 7.054396580803001 0 2.610924374808178 1 2.6747425010840047 0.25 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};[YQ]KEVWN{I|L}{M(Oxidation (M))|F};[KA][YG]EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F} 6.7851;6.2095;6.0337;6.0337;5.4617;5.4046;5.286;4.9903;4.8883;4.7441 +;-;-;-;-;-;-;-;-;- + 6395 NaN NaN 487478.4 NaN 13357 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16741 71.1 NaN 518020 35 0 73951 0.262 + 12056 KITDVIIGF 9 70 503.3036873900452 1004.5928218468904 2 503.30291748046875 MULTI HCD FTMS 0 0 0 16739 179200.453125 0.4423788091952289 2 -0.05236053466796875 2 Unmodified _KITDVIIGF_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9 47.594388314883695 0.03493607795751234 1 [K{I|L}]TDV{I|L}{I|L}G{M(Oxidation (M))|F} 9 0 + 55.441 0 0 5.5188 5.5188 90.274 0 0 0 0.5063074057160293 50.837226273038326 0.5063074057160293 21.082819993105673 0 2.555462187404089 0 0 0 + + [K{I|L}]TDV{I|L}{I|L}G{M(Oxidation (M))|F};{I|L}{I|L}{[MG]|[TS]}AA{I|L}{I|L}G{M(Oxidation (M))|F};[K{I|L}]TDV{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 5.5188;3.4201;0.66723 +;-;- + 96 NaN NaN 160338.1 NaN 13358 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16742 71.104 NaN 1157600 35 0 230810 0.261 + 1231 AYLPKILQI 9 85 529.8341594801072 1057.6537660270144 2 529.8341674804688 MULTI HCD FTMS 0 0 0 16739 446763.9375 0.5075079439412911 -3 0.11165618896484375 3 Unmodified _AYLPKILQI_ ENSG00000120800|ENST00000261637|UTP20 92.8221339359638 0.0044520161739443126 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}Q{I|L} 9 0 + 72.221 0 0 6.8284 6.8284 89.469 0 0 0 24.13734275855269 56.77108148272637 24.13734275855269 9.208187539523749 0 1.7302046884880937 1.6989700043360187 0 0.3807196863200844 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}[AG]{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L};[KP]{I|L}{I|L}Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L};[KP]{I|L}{I|L}[AG]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 6.8284;5.9578;3.0879;2.3975;2.2173;1.5269 +;-;-;-;-;- + 447 NaN NaN 263921.2 NaN 13359 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16743 71.107 NaN 371510 35 0 75349 0.261 + 5963 FPDQLYDAV 9 47 534.2558046007191 1066.497056268238 2 534.2557983398438 MULTI HCD FTMS 0 0 0 16739 242796.59375 0.9517242097384792 -4 0.14780426025390625 4 Unmodified _FPDQLYDAV_ ENSG00000175274|ENST00000525680|TP53I11 34.93206674587334 0.08860942999206235 1 {I|L}YDAV 5 4 50.846 0 0 4.7676 0 0 487.2074452130875 0 487.2074452130875 0 32.88725489996436 0 0 0 1.6382104921644451 0 0 0 + {I|L}YDAV 4.7676 + + 71 NaN NaN 137467.4 NaN 13360 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16744 71.11 NaN 410600 35 0 27849 0.261 + 19995 NYIEFTRIL 9 84 584.8216400289996 1167.628727124799 2 584.8219604492188 MULTI HCD FTMS 0 0 0 16739 127376.984375 0.24178182958371702 5 -0.130401611328125 5 Unmodified _NYIEFTRIL_ ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B 49.74193281347159 0.03193181027262171 1 [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L} 9 0 + 88.399 0 0 7.5708 7.5708 93.94 0 0 0 16.2946863546763 14.973024840566467 14.973024840566467 21.126342309407548 0 2.5669015600442577 1.6989700043360187 0 0.28872548999643577 + + [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L};[YG]G{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}T[VG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RE{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RE{M(Oxidation (M))|F}T[VG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{M(Oxidation (M))|F}T[VG]{I|L}{I|L} 7.5708;5.7615;5.3524;4.6664;4.5823;4.5676;3.9279;3.9132;3.8963;3.8815 +;-;-;-;-;-;-;-;-;- + 1601 NaN NaN 143474.9 NaN 13361 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16745 71.114 NaN 627190 35 0 64118 0.261 + 7826 FYQRFPLSF 9 77 602.811244157672 1203.607935382144 2 602.8117065429688 MULTI HCD FTMS 0 0 0 16739 218147.96875 0.4180196732400425 -3 0.11165618896484375 6 Unmodified _FYQRFPLSF_ ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF 99.75527289724121 0.004270341300239591 1 {M(Oxidation (M))|F}YQR{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F} 9 0 + 80.997 0 0 6.7295 6.7295 89.289 0 0 0 13.46787486224656 22.914478256039672 13.46787486224656 9.208187539523749 0 2.3979400086720375 0 2.0356668758921828 0.3807196863200844 + + {M(Oxidation (M))|F}YQR{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[AG]R{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};[{I|L}P]S{[CA]|SS}[RN]P{I|L}S{M(Oxidation (M))|F};[{I|L}P]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[RN]P{I|L}S{M(Oxidation (M))|F};[{I|L}P]S{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}RS{M(Oxidation (M))|F};[{I|L}P]S{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}R{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][AG]R{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}YQ[KA]KWS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}PTV{M(Oxidation (M))|F} 6.7295;5.9644;4.8257;4.3806;4.3344;4.1226;4.1226;4.0606;3.9031;3.7637 +;-;+;-;-;-;-;-;-;- + 864 + NaN NaN 178762.6 NaN 13362 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16746 71.117 NaN 472380 35 0 43428 0.261 + 2410 DPNLEFVAM 9 60 526.2420242273795 1050.4694955215589 2 526.2420043945312 MULTI HCD FTMS 0 0 0 16739 100620.5546875 0.7421708465178203 -3 0.11165618896484375 7 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 45.69961567697781 0.039180348357221985 1 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 4 60.701 0 0 5.7785 0 0 439.2066594285977 0 439.2066594285977 0 57.60213141451892 0 0 0 2.4247425010840047 0 0 0 + E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.7785 + + 134 + NaN NaN 158420.8 NaN 13363 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16747 71.12 NaN 334480 35 0 35135 0.261 + 15781 LPHALLAVL 9 52 473.8077947835836 945.6010366339672 2 473.8077392578125 MULTI HCD FTMS 0 0 0 16739 120866.8984375 1 0 0 8 Unmodified _LPHALLAVL_ ABCC10|p.A144Lfs*4|1|0.19|ENSG00000124574|chr6:43432410-43432410|G/-|frameshift_variant;ENSG00000124574|ENST00000372530|ABCC10 20.871210003555333 0.18003371494288972 1 {I|L}AV{I|L} 4 5 40.745 0 0 4.3089 0 0 531.3151112287125 0 531.3151112287125 0 29.776296993281406 0 0 0 0.8807196863200843 0 0 0 + {I|L}AV{I|L} 4.3089 + + 65 NaN NaN 131227 NaN 13364 3381 16739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16749 71.125 NaN 443030 35 0 29781 0.327 + 22465 QQYAVFENIF 10 79 629.8087122251125 1257.6028715170248 2 629.8087158203125 MULTI HCD FTMS 0 0 0 16748 252881.953125 0.22373875033123042 5 -0.13037872314453125 1 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 26.268140514670165 0.2654086933305545 1 {[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}SWN{I|L}{M(Oxidation (M))|F} 10 -1 + 69.334 0 0 5.5132 5.5132 86.358 0 0 0 12.430380486862944 11.800398258514889 11.800398258514889 9.164539485499255 0 1.5 1.6989700043360187 2 0 {[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}SWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}SWGG{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[DS]|[MA]|[CV]|TT}SWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YAA{M(Oxidation (M))|F}{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y[YG]T[PG]N{I|L}{M(Oxidation (M))|F};[YN]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S[VS]N{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[DS]|[MA]|[CV]|TT}SWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[SA]|[TG]}Y[PG]N{I|L}{M(Oxidation (M))|F};[YN]A[{I|L}A]{M(Oxidation (M))|F}{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};[YN]{I|L}AA{M(Oxidation (M))|F}{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F} 5.5132;4.7845;4.5248;4.4862;4.0749;3.796;3.796;3.656;3.4978;3.4978 -;-;-;-;-;-;-;-;-;- 1960 NaN NaN 154641.6 NaN 13365 3382 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16750 71.13 NaN 365910 35 0 23759 0.261 + 13092 KYLELCVDL 9 93 548.2916503143242 1094.5687476954483 2 548.2916870117188 MULTI HCD FTMS 0 0 0 16748 70576.5703125 0.09468562547888881 24 -0.6723098754882812 2 Unmodified _KYLELCVDL_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 37.07464296494664 0.07877380486334713 1 E{I|L}CVD{I|L} 6 3 57.964 0 0 5.2956 0 0 404.2424488751969 0 404.2424488751969 0 30.03968976717985 0 0 0 2.2302046884880937 0 0 0 + E{I|L}CVD{I|L} 5.2956 + + 1755 NaN NaN 141818.1 NaN 13366 3382 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16751 71.133 NaN 557240 35 0 76618 0.261 + 33519 YIEPLRSIL 9 70 552.3265013397413 1102.6384497462825 2 552.3271484375 MULTI HCD FTMS 0 0 0 16748 120508.5546875 0.0132424756690904 30 -0.8354110717773438 3 Unmodified _YIEPLRSIL_ REV__ENSG00000103966|ENST00000220325|EHD4 20.453626601364224 0.18364154288633264 1 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F} 6 -1 26.688 0 0 2.4203 0 0 362.29764271678874 0 362.29764271678874 0 0.718421963928435 0 0 0 0 0 0.8807196863200843 0 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F} 2.4203 - 564 + NaN NaN 158712.7 NaN 13367 3382 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16752 71.137 NaN 307260 35 0 55274 0.261 -1 TPEIMAPIL 9 52 500.7725209121171 999.5304888910342 2 500.7731018066406 MULTI HCD FTMS 0 0 0 16748 127637.8046875 0.683518473396495 -2 0.06894683837890625 4 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 28.486842064014134 0.11819662193267319 1 AP{I|L}{I|L} 4 -1 42.423 0 0 4.2443 0 0 587.2615668481341 0 587.2615668481341 0 11.453650195120844 0 0 0 1.3494850021680094 0 0 0 AP{I|L}{I|L} 4.2443 + + 34 NaN NaN 125007.6 NaN 13368 3382 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16753 71.14 NaN 428280 35 0 43034 0.261 + 6442 FPIEAGDMF 9 69 521.7312459008294 1041.4479388684588 2 521.7311401367188 MULTI HCD FTMS 0 0 0 16748 98518.5 0.4465689314806186 -11 0.32770538330078125 5 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 48.345845343767074 0.03388484103555672 1 EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 35.947 0 0 3.4517 0 0 357.2051149278489 0 357.2051149278489 0 28.95750937337162 0 0 0 1.8494850021680094 0 0.3807196863200844 0 + EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4517 + + 37 + NaN NaN 143691.6 NaN 13369 3382 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16754 71.143 NaN 126440 35 0 11027 0.261 + -1 WPFLFLIDM 9 48 599.3042127145742 NaN 0 599.2913818359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WPFLFLIDM(Oxidation (M))_ REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF 2.302733041254933 0.2840881193086663 1 PWW 3 -1 16.198 0 0 1.3537 0 0 147.09639446816487 577.2663057916624 724.3627002598273 0 0 0 0 0 0 0 0 0 PWW 1.3537 - 23 + NaN NaN 104280.8 NaN 13370 3382 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16756 71.148 NaN 284790 35 0 39176 0.327 + 13685 KYPGFLLNNF 10 78 606.824741398966 1211.634929864732 2 606.8252563476562 MULTI HCD FTMS 0 0 0 16755 179448.96875 1 0 0 1 Unmodified _KYPGFLLNNF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 89.40071534611396 0.0010484101455745577 1 [{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}{I|L}NN{M(Oxidation (M))|F} 10 5 + 71.464 0 0 5.8981 5.8981 83.379 0 0 0 3.8784939400354546 3.8784939400354546 3.8784939400354546 1.020599913279625 0 1.3494850021680094 0 0 0.7614393726401688 [{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}{I|L}NN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}QVN{M(Oxidation (M))|F};[YK]PG{M(Oxidation (M))|F}{I|L}{I|L}NN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}{I|L}GGN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}{I|L}NGG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}{I|L}KANN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}[AG]VN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}AK{I|L}QVGG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[HV]K{I|L}{I|L}NN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}KA{I|L}NN{M(Oxidation (M))|F} 5.8981;5.8139;5.578;5.1418;5.1418;5.0913;5.0575;5.0575;5.0117;5.007 -;-;+;-;-;-;-;-;-;- + 2355 NaN NaN 128302.8 NaN 13371 3383 16755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16757 71.153 NaN 318200 35 0 56179 0.263 + 30746 VPLDQTVTL 9 53 493.28173561315367 984.5489182931074 2 493.281982421875 MULTI HCD FTMS 0 0 0 16755 80878.1484375 0.3575764431509437 2 -0.04579925537109375 2 Unmodified _VPLDQTVTL_ REV__ENSG00000180304|ENST00000326005|OAZ2;REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF 49.93300154707207 0.03166451819912738 1 CTVT{I|L} 5 -1 44.208 0 0 4.4902 0 0 449.2836727870511 0 449.2836727870511 0 38.72363747448347 0 0 0 1.3494850021680094 0 0.8494850021680094 0 CTVT{I|L} 4.4902 - 45 + NaN NaN 129496.1 NaN 13372 3383 16755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16758 71.156 NaN 241910 35 0 16040 0.261 + 22963 QYVYWLHML 9 64 634.8103877121284 1267.6062224910568 2 634.810546875 MULTI HCD FTMS 0 0 0 16755 95676.5703125 0.16289745907332362 23 -0.6494674682617188 3 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 63.562846038646086 0.012597299157545023 1 [YQ]VYW{I|L}HEM 9 2 [YQ] + + 48.505 3.7236 1.2791 3.8265 3.8265 59.926 0 0 0 0 27.69241637317073 0 0 0 1.677825934852436 0 0 0 [YQ]VYW{I|L}HEM 3.8265 - 247 + NaN NaN 119165.2 NaN 13373 3383 16755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16759 71.159 NaN 190580 35 0 31236 0.261 + 12547 KSLEFNYPQF 10 60 636.816168743697 1271.6177845541938 2 637.2998657226562 MULTI HCD FTMS 0 0 0 16755 18846.259765625 0.8231298894552745 -3 0.09178924560546875 4 Unmodified _KSLEFNYPQF_ REV__ENSG00000119915|ENST00000370005|ELOVL3 6.2057823575117 0.44245551207394906 1 NPY 3 -1 8.9967 0 0 0.7075 0 0 879.4111633157157 0 879.4111633157157 0 -3.5832456598404665 -3.5832456598404665 0 0 0.15494718957209846 0 0 0 NPY 0.7075 - 133 + NaN NaN 112555.5 NaN 13374 3383 16755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16760 71.163 NaN 223560 35 0 39586 0.264 + 3989 ERFVHCPARF 10 49 421.2128548080583 1260.616735024375 3 421.56207275390625 MULTI HCD FTMS 0 0 0 16755 4914.6142578125 0.08751342115967722 3 -0.07804107666015625 5 Unmodified _ERFVHCPARF_ ENST00000319540.8_1_4:83551356-83551434:-|nuORF 8.444304893310646 0.4306066564229251 1 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.7444 0 0 1095.5378908855062 0 1095.5378908855062 0 15 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7444 + + 11 + NaN NaN 114597.3 NaN 13375 3383 16755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16761 71.166 NaN 138170 35 0 6291.9 0.261 + -1 ELMKLHCVW 9 63 587.7902595066569 1173.5659660801136 2 588.290771484375 MULTI HCD FTMS 0 0 0 16755 27482.212890625 0.28904957820338845 -1 0.0228424072265625 6 Oxidation (M) _ELM(Oxidation (M))KLHCVW_ REV__ENST00000366535.3_1_1:244582114-244582183:-|nuORF 7.289230182591677 0.29575926068275815 1 KM 2 -1 12.474 0 0 1.0629 0 0 896.4110000214938 0 896.4110000214938 0 1.6773532018394377 0 0 0 0 0 0 0 KM 1.0629 - 68 NaN NaN 106527.1 NaN 13376 3383 16755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16763 71.171 NaN 482990 35 0 25368 0.327 + -1 ELCTSRTNLF 10 90 620.8043883709606 1239.5942238087212 2 620.803466796875 MULTI HCD FTMS 0 0 0 16762 352639.3125 0.23212160242811886 7 -0.20162200927734375 1 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))TSRTNLF_ REV__ENST00000480234.1_1_21:46285323-46293531:-|nuORF 31.26834338654808 0.2211790902911672 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}WN{I|L}{M(Oxidation (M))|F} 9 -1 + 67.105 0 0 5.4135 5.4135 86.942 0 0 0 19.462724883926654 35.401763648293354 19.462724883926654 9.208187539523749 0 1.4247425010840047 1.6989700043360187 1.9247425010840047 0 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}WN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}WGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}T[QA]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}TN[TP]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}TNVV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}[RN]VCN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[WK][RD]N{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[WT]|[RM]}{[QG]|[NA]}V[Y{I|L}] 5.4135;4.6707;4.6707;3.8639;2.9997;2.9997;2.3055;2.2046;1.8719;1.8329 -;-;-;-;-;-;-;-;-;- 1321 NaN NaN 154758.2 NaN 13377 3384 16762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16764 71.175 NaN 977790 35 0 96585 0.261 + 12806 KYEELFPAF 9 106 572.2896840640939 1142.5648151949877 2 572.2894287109375 MULTI HCD FTMS 0 0 0 16762 230357.984375 0.03004197049389974 24 -0.6722564697265625 2 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 34.93206674587334 0.08860942999206235 1 {I|L}YG{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F} 10 5 + 71.495 0 0 6.2574 6.2574 84.648 0 0 0 2.530157902684252 2.530157902684252 2.530157902684252 2.530157902684252 0 1.7440840204505517 2 0 0 {I|L}YG{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{I|L}YGSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]D{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}[RN]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};[Y{I|L}]GRN{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}{[DA]|[EG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YG]{I|L}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YT][VG]E{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 6.2574;6.0359;5.5038;5.3555;5.2823;4.3411;3.919;3.6696;3.6375;3.6244 -;-;-;-;-;-;-;-;-;- 4137 + NaN NaN 228576.1 NaN 13378 3384 16762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16765 71.179 NaN 284490 35 0 25193 0.261 + 10175 IFTARLYYF 9 70 597.3211033981014 1192.6276538630027 2 597.3213500976562 MULTI HCD FTMS 0 0 0 16762 133932.34375 0.6940211564771095 -3 0.07526397705078125 3 Unmodified _IFTARLYYF_ ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C 49.93300154707207 0.03166451819912738 1 YY{M(Oxidation (M))|F} 3 6 29.693 0 0 2.4897 0 0 701.4251576154312 0 701.4251576154312 0 10.93704052456225 0 0 0 0.5 0 0 0 + YY{M(Oxidation (M))|F} 2.4897 + + 121 NaN NaN 119130.9 NaN 13379 3384 16762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16766 71.182 NaN 144210 35 0 43789 0.262 + 8280 GVEVPDVEL 9 35 478.7504445191439 955.4863361050878 2 478.7503356933594 MULTI HCD FTMS 0 0 0 16762 99671.890625 1 0 0 4 Unmodified _GVEVPDVEL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 10.073929032068715 0.27331982688540024 1 E{I|L} 2 7 20.969 0 0 2.1946 0 0 695.3505116193375 0 695.3505116193375 0 8.979400086720375 0 0 0 0 0 0 0 + E{I|L} 2.1946 + + 14 NaN NaN 122121.3 NaN 13380 3384 16762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16767 71.186 NaN 204680 35 0 16346 0.261 + 27452 SYVRSLPFF 9 55 558.2988451643577 1114.5831373955152 2 558.2986450195312 MULTI HCD FTMS 0 0 0 16762 36013.609375 0.0199092409132594 41 -1.1636581420898438 5 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[WR]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 6 22.937 0 0 2.0579 0 0 166.20651556786078 0 166.20651556786078 0 16.994784489444967 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[WR]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0579 - 89 + NaN NaN 109130.5 NaN 13381 3384 16762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16768 71.189 NaN 83856 35 0 9046 0.262 + -1 DCLFHHIVNSD 11 36 452.8703632013494 NaN 0 452.88116455078125 PEAK HCD FTMS 0 0 0 16762 5576.015625 0.22289713496936348 6 -0.178802490234375 6 Carbamidomethyl (C) _DC(Carbamidomethyl (C))LFHHIVNSD_ REV__ENSG00000171496|ENST00000641027|OR1L8 1.214830529360525 0.33867401910978034 1 T 1 -1 1.5938 0 0 0.17636 0 0 419.78774070758317 379.85737024478755 799.6451109523707 0 0 0 0 0 0 0 0 0 T 0.17636 - 2 + NaN NaN 96184.5 NaN 13382 3384 16762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16770 71.194 NaN 2036600 35 0 368060 0.327 -1 MIKVELEAKM 10 112 612.3218065062987 1222.6290600793973 2 612.3433227539062 MULTI HCD FTMS 0 0 0 16769 45374.31640625 0.4040282178448902 -4 0.0981597900390625 1 2 Oxidation (M) _M(Oxidation (M))IKVELEAKM(Oxidation (M))_ CON__P07744 20.41453444215458 0.3201613495159799 1 RD{I|L}G{I|L}K{M(Oxidation (M))|F} 7 -1 58.745 0 0 4.8048 0 0 375.1801930158219 0 375.1801930158219 0 25.769796716584857 0 0 0 0 0 1.0114393726401687 0.8945990182825423 RD{I|L}G{I|L}K{M(Oxidation (M))|F} 4.8048 - 2473 NaN NaN 407176.2 NaN 13383 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16771 71.198 NaN 1245900 35 0 256840 0.264 -1 0 79 408.5640241148902 1222.6702429448706 3 408.5643615722656 MULTI HCD FTMS 0 0 0 16769 527018.9375 0.17764573505444628 6 -0.1787261962890625 2 NaN NaN 1 HD{I|L}G{I|L}K{M(Oxidation (M))|F} 7 -1 73.518 0 0 6.0129 0 0 394.2087574689469 0 394.2087574689469 0 61.83561654977865 0 0 0 2.5682503180159344 0 1.610924374808178 0 HD{I|L}G{I|L}K{M(Oxidation (M))|F} 6.0129 - 500 NaN NaN 270653.3 NaN 13384 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16772 71.202 NaN 2346900 35 0 145160 0.223 + 19747 NYAWVYYHL 9 111 614.7929287250602 1227.5713045169202 2 614.79296875 MULTI HCD FTMS 0 0 0 16769 586691.3125 0.010456056794890796 74 -2.1092529296875 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 131.26759243768294 0.0005280990274065272 1 [YN]AWVYYH{I|L} 9 0 + 89.998 0 0 7.3314 7.3314 93.641 0 0 0 15.176835373740758 11.681737155418887 11.681737155418887 21.853940378938404 0 2.7302046884880937 1.6989700043360187 0 1.8116042352767732 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GYV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};DS[KT]YVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GYVQE{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GYV{[DA]|[EG]}{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GCV{[TV]|[{I|L}S]}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};D[RH]WVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.3314;5.5511;5.0925;4.6479;4.5447;4.2001;3.9953;3.9719;3.9577;3.9219 +;-;-;-;-;-;-;-;-;- + 4839 NaN NaN 349974.4 NaN 13385 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16773 71.205 NaN 855520 35 0 70766 0.261 + 1271 AYLYKYFAL 9 106 576.3099656705185 1150.605378407837 2 576.3098754882812 MULTI HCD FTMS 0 0 0 16769 94921.8828125 0.21729443590369082 6 -0.1787261962890625 4 Unmodified _AYLYKYFAL_ ENSG00000136156|ENST00000647800|ITM2B;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;nc|ENSG00000136156|Q9Y287-2|ITM2B 48.345845343767074 0.03388484103555672 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}C(Carbamidomethyl (C))K 10 7 + 59.327 0 0 5.1561 5.1561 82.57 0 0 0 4.451687839877891 3.3727270250230035 3.3727270250230035 1.9897000433601875 0 0.9247425010840047 1.3979400086720375 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE[KG]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KG]EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}[C(Carbamidomethyl (C))K]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE[KG][KS]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}[KG]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}[C(Carbamidomethyl (C))K]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}[KG]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}CAVK 5.1561;4.9832;4.863;4.7692;4.7261;4.6912;4.6668;4.5531;4.4939;4.4439 -;-;-;-;-;-;-;-;-;- 8626 NaN NaN 211412.7 NaN 13386 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16774 71.208 NaN 1124200 35 0 269220 0.261 + 6403 FPHLLQPVL 9 94 532.3186598442988 1062.6227667553976 2 532.318603515625 MULTI HCD FTMS 0 0 0 16769 333069.125 0.2931453323929106 -4 0.0981597900390625 5 Unmodified _FPHLLQPVL_ ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 53.57557251787612 0.02656881086235134 1 QPV{I|L} 4 5 50.86 0 0 4.7863 0 0 607.34847075059 0 607.34847075059 0 25.787953282225466 0 0 0 1.3807196863200843 0 0 0.5114393726401688 + QPV{I|L} 4.7863 + + 628 NaN NaN 250371.8 NaN 13387 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16775 71.211 NaN 1497500 35 0 408800 0.261 + 23649 RPVSVWDVL 9 89 535.8031112556107 1069.5916695780213 2 535.8034057617188 MULTI HCD FTMS 0 0 0 16769 447993.28125 0.17438807309772555 -4 0.0981597900390625 6 Unmodified _RPVSVWDVL_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 53.40400417844725 0.026808823219830042 1 [VP]RSVWDV{I|L} 9 2 + 67.898 0 0 6.348 6.348 87.312 0 0 0 8.234002963358407 16.478174818886373 8.234002963358407 8.234002963358407 0 1.0994850021680094 1.3010299956639813 0.7059771852360797 0 [VP]RSVWDV{I|L};[RP]VSVWDV{I|L};[DV]W[VS]PRV{I|L};[DV]W[VS]RPV{I|L};[RV]PSVWDV{I|L};[DV]WR[VP]SV{I|L};[VP][VS]RWDV{I|L};[DV]WR[VS]PV{I|L};[VS][RP]VWDV{I|L};[VS][VP]RWDV{I|L} 6.348;5.5782;5.4357;5.2711;4.995;4.7435;4.7023;4.5789;4.3135;3.8579 -;+;-;-;-;-;-;-;-;- + 2350 NaN NaN 311871.3 NaN 13388 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16776 71.215 NaN 416950 35 0 50735 0.261 + 9871 IADTNFDVL 9 75 504.25570530158546 1006.496857669971 2 504.2563781738281 MULTI HCD FTMS 0 0 0 16769 97730.1484375 0.5660322095758149 -4 0.0981597900390625 7 Unmodified _IADTNFDVL_ ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20 21.536976647645854 0.1742816388551942 1 {M(Oxidation (M))|F}DV{I|L} 4 5 41.23 0 0 4.0964 0 0 514.2390003888687 0 514.2390003888687 0 18.526909627198407 0 0 0 0.7302046884880937 0 0.3494850021680094 0 + {M(Oxidation (M))|F}DV{I|L} 4.0964 + + 107 NaN NaN 145754.5 NaN 13389 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16777 71.218 NaN 199500 35 0 22825 0.261 + 21160 PPPLPSGLYF 10 49 544.2946057869935 1086.574658640787 2 544.2944946289062 MULTI HCD FTMS 0 0 0 16769 63322.43359375 0.8447057171999147 1 -0.0322418212890625 8 Unmodified _PPPLPSGLYF_ REV__ENST00000502379.5_1_5:218428-224813:+|nuORF 19.256988751693697 0.33098864134661865 1 G{I|L}Y{M(Oxidation (M))|F} 4 -1 42.735 0 0 3.933 0 0 588.3287831037125 0 588.3287831037125 0 25.21652514092061 0 0 0 1.3807196863200843 0 0 0 G{I|L}Y{M(Oxidation (M))|F} 3.933 + + 22 NaN NaN 111514.1 NaN 13390 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16778 71.221 NaN 220960 35 0 22052 0.261 + -1 VEYISMPAL 9 75 540.7675798128076 1079.5206066924152 2 540.7681274414062 MULTI HCD FTMS 0 0 0 16769 77139.0703125 0.5192089082353114 8 -0.2377166748046875 9 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VEYISM(Oxidation (M))PAL_ REV__ENSG00000074966|ENST00000264316|TXK;REV__TXK|p.P488S|1|0.55|ENSG00000074966|chr4:48071570-48071570|G/A|missense_variant 12.531546534597751 0.2520865569484384 1 VA{I|L} 3 -1 33.5 0 0 3.1032 0 0 778.323045799025 0 778.323045799025 0 14.035984316004217 0 0 0 0.8807196863200843 0 0 0 VA{I|L} 3.1032 - 81 NaN NaN 117354 NaN 13391 3385 16769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16780 71.226 NaN 2224600 35 0 477950 0.327 + 16233 LPWSKAWEL 9 115 565.3057164389593 1128.5968799447185 2 565.3058471679688 MULTI HCD FTMS 0 0 0 16779 1348995.125 0.9879878299087481 1 -0.0294952392578125 1 Unmodified _LPWSKAWEL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 114.18643581695662 0.002258955990713129 1 {I|L}PWSKAWE{I|L} 9 0 + 103.29 0 0 9.1516 9.1516 94.205 0 0 0 20.012714607746318 10.324609153403514 10.324609153403514 10.324609153403514 0 2.885151878060192 1.6989700043360187 1.555462187404089 0.3807196863200844 + + {I|L}PWSKAWE{I|L};[{I|L}P]WSKAWE{I|L};[{I|L}P]WSKAEW{I|L};[WP]{I|L}SKAWE{I|L};[{I|L}P]WSKEAW{I|L};[WP]{I|L}SKAEW{I|L};[WP]S{I|L}KAWE{I|L};[WP]{I|L}SKEAW{I|L};[W{I|L}]PSKAWE{I|L};[WP]S{I|L}KAEW{I|L} 9.1516;8.2368;7.3999;7.371;6.636;6.5341;6.3087;5.7702;5.755;5.4717 +;+;-;-;-;-;-;-;-;- + 11356 + NaN NaN 425252.7 NaN 13392 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16781 71.231 NaN 1242900 35 0 112680 0.261 + 6758 FPQKWPDLL 9 113 572.3135319264283 1142.6125109196564 2 572.3135375976562 MULTI HCD FTMS 0 0 0 16779 388055.84375 0.3658229537366548 -7 0.2059326171875 2 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 86.33184430468982 0.004622086694044132 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE 9 4 + 63.343 0 0 5.5437 5.5437 84.364 0 0 0 11.447340481202062 4.471128017558641 4.471128017558641 4.471128017558641 0 1.1989700043360187 1.6989700043360187 0.805462187404089 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}[DP]{I|L};[Y{I|L}]G{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWP[{I|L}V]E;{M(Oxidation (M))|F}P[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}[DP]{I|L} 5.5437;5.1524;4.7378;4.5418;4.3465;4.2593;4.2505;4.1153;3.736;3.4534 -;+;-;+;-;-;-;-;-;- + 5008 NaN NaN 269376.5 NaN 13393 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16782 71.234 NaN 1178100 35 0 206650 0.261 + 24540 RYLETILEI 9 100 575.3294910876635 1148.644429242127 2 575.3300170898438 MULTI HCD FTMS 0 0 0 16779 397175.46875 0.6387745269708726 -1 0.0322418212890625 3 Unmodified _RYLETILEI_ ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP 76.82478488871298 0.006879825292024087 1 [Y{I|L}]RET{I|L}{I|L}E{I|L} 9 2 + 77.674 0 0 6.7622 6.7622 86.925 0 0 0 5.313119813491198 16.478174818886373 5.313119813491198 5.313119813491198 0 1.9005149978319906 1.154901959985743 1.079689690656103 0.25 [Y{I|L}]RET{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[YR]T{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}V[YG]T{I|L}{I|L}E{I|L};{[CT]|[{M(Oxidation (M))|F}G]}T[KQ]T{I|L}{I|L}E{I|L};[VP][HV]ET{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}V[YG]T{I|L}{I|L}G[KG];[Y{I|L}][KS][NG]{I|L}{I|L}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[K{I|L}][NG]{I|L}{I|L}E{I|L};{[DS]|[MA]|[CV]|TT}VV[YV]{I|L}{I|L}G[KG];{[QN]|[E{I|L}]|[KN]}V[YG]G{I|L}{I|L}T[KG] 6.7622;6.2996;6.1909;5.4891;5.346;5.1098;4.3947;3.3203;2.7236;2.6652 -;-;-;-;-;-;-;-;-;- 3837 NaN NaN 270078 NaN 13394 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16783 71.238 NaN 476060 35 0 27496 0.261 + 29424 TYTDRVFFL 9 78 581.3005047013379 1160.5864564694757 2 581.30078125 MULTI HCD FTMS 0 0 0 16779 264266.34375 0.05258785259914685 34 -0.9634017944335938 4 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 49.55428908609986 0.03219431099695407 1 {I|L}P{[DS]|[MA]|[CV]|TT}HSV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 5 + 59.274 0 0 5.1073 5.1073 89.317 0 0 0 31.34266335110638 10.324609153403514 10.324609153403514 18.833719726770823 0 1.9604093769761874 1.6989700043360187 0.9247425010840047 0 {I|L}P{[DS]|[MA]|[CV]|TT}HSV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}PW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QT]{M(Oxidation (M))|F}{I|L};[YT]{[RE]|[WV]}SV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.1073;3.4845;3.3312 -;-;- 372 + NaN NaN 154167.4 NaN 13395 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16784 71.241 NaN 453770 35 0 105810 0.261 -1 NEDSMDAMEI 10 67 585.7179266192262 1169.4213003052523 2 585.718505859375 MULTI HCD FTMS 0 0 0 16779 141832.609375 0.4165042900374975 -4 0.10088348388671875 5 Oxidation (M) _NEDSM(Oxidation (M))DAMEI_ ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 1.3295316138638542 0.46826628246186464 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 40.433 0 0 3.4575 0 0 649.1649037091812 0 649.1649037091812 0 25.74031267727719 0 0 0 1 0 0 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.4575 - 63 NaN NaN 154305.9 NaN 13396 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16785 71.244 NaN 153400 35 0 12683 0.261 + 3855 EPISVEVQL 9 46 507.2792494925505 1012.543946051901 2 507.2793273925781 MULTI HCD FTMS 0 0 0 16779 109378.3359375 0.31334111619086225 16 -0.464569091796875 6 Unmodified _EPISVEVQL_ ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 18.1463463914782 0.20357593197100715 1 VQ{I|L} 3 6 30.005 0 0 2.9633 0 0 654.3226185529312 0 654.3226185529312 0 23.015384402724592 0 0 0 0.3807196863200844 0 0 0 + VQ{I|L} 2.9633 + + 32 NaN NaN 124697.3 NaN 13397 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16786 71.247 NaN 560570 35 0 60654 0.261 -1 0 86 551.2643798809362 550.2571034143361 1 552.2577514648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 17.474 0 0 3.1757 0 0 272.09360351374863 0 272.09360351374863 0 10.395906230238126 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 3.1757 - 36 + NaN NaN 167576.1 NaN 13398 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16787 71.251 NaN 329030 35 0 32000 0.261 + 4500 EYISIALRI 9 68 539.3187701384826 1076.622987343765 2 539.3186645507812 MULTI HCD FTMS 0 0 0 16779 153335.984375 0.20817700175485088 16 -0.464569091796875 8 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 72.96794272382148 0.008127836904478181 1 [YE]{I|L}S{I|L}AR{I|L}{I|L} 9 2 + 62.507 0 0 5.8058 5.8058 82.863 0 0 0 0.33091886732229625 0.33091886732229625 0.33091886732229625 0.33091886732229625 0 2.524227503252014 1.0969100130080565 1.5994850021680094 0 [YE]{I|L}S{I|L}AR{I|L}{I|L};[YE]{I|L}S{I|L}A{I|L}R{I|L};[YT]{NN|[MP]|[D{I|L}]|[EV]}{I|L}AR{I|L}{I|L} 5.8058;5.7751;2.5887 -;+;- + 384 NaN NaN 135623.6 NaN 13399 3386 16779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16789 71.256 NaN 2306300 35 0 215810 0.327 + 4713 EYQKVWNLF 9 122 613.8136951048748 1225.6128372765495 2 613.8141479492188 MULTI HCD FTMS 0 0 0 16788 892777.4375 0.06353432245992212 10 -0.2874755859375 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 121.50329630698991 0.001120265034723027 1 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 80.544 0 0 6.5717 6.5717 87.803 0 0 0 8.371600865782867 9.574484699911565 8.371600865782867 8.371600865782867 0 2.610924374808178 1.154901959985743 2.7302046884880937 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};[KA][YG]EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};[YN]A{[TV]|[{I|L}S]}VWN{I|L}{M(Oxidation (M))|F};[YE]QKV{I|L}NW{M(Oxidation (M))|F} 6.5717;5.8887;5.8204;5.8204;5.1409;5.0726;4.8187;4.7854;4.4041;4.2513 +;-;-;-;-;-;-;-;-;- + 4555 NaN NaN 430035.7 NaN 13400 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16790 71.26 NaN 1146200 35 0 242060 0.261 + 1232 AYLPKILQI 9 76 529.8341594801072 1057.6537660270144 2 529.834228515625 MULTI HCD FTMS 0 0 0 16788 590266.6875 0.6705219642983418 3 -0.09416961669921875 2 Unmodified _AYLPKILQI_ ENSG00000120800|ENST00000261637|UTP20 107.99703571036002 0.003269392969029945 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}Q{I|L} 9 0 + 83.601 0 0 7.9044 7.9044 92.656 0 0 0 2.3318600539530223 2.3318600539530223 2.3318600539530223 11.540047593476771 0 2.8243923658886185 1.6989700043360187 0 1.079689690656103 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Q{I|L}]{I|L}[KP]{I|L};[KP]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}Q{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L};[KP]{I|L}{I|L}Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[KP]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[AG]{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L};[KP]{I|L}{I|L}[AG]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 7.9044;6.8133;4.4798;2.7296;2.4233;1.8699;1.8589;1.5527;0.99925 +;-;-;-;-;-;-;-;- + 278 + NaN NaN 251494.6 NaN 13401 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16791 71.264 NaN 446900 35 0 40161 0.261 + 7827 FYQRFPLSF 9 68 602.811244157672 1203.607935382144 2 602.8114624023438 MULTI HCD FTMS 0 0 0 16788 230473.21875 0.4416375735447037 3 -0.09416961669921875 3 Unmodified _FYQRFPLSF_ ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF 88.95385435242217 0.004553379958619559 1 [Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F} 9 0 [Y{M(Oxidation (M))|F}] + + 53.46 3.7236 1.2007 4.4417 4.4417 60.692 0 0 0 0 31.74574744714249 0 0 0 2.024227503252014 0 1.3737125054200234 0.3494850021680094 + + [Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F} 4.4417 + + 679 + NaN NaN 154943.1 NaN 13402 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16792 71.267 NaN 509130 35 0 35673 0.261 + 29425 TYTDRVFFL 9 84 581.3005047013379 1160.5864564694757 2 581.301025390625 MULTI HCD FTMS 0 0 0 16788 268070.3125 0.05334482582955565 35 -0.9871749877929688 4 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 53.832793166522166 0.026208976789938845 1 [YT]{[RE]|[WV]}SV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 5 + 49.011 0 0 4.2229 4.2229 81.158 0 0 0 12.062405762777573 6.676127934005429 6.676127934005429 2.2172622283295595 0 1.524227503252014 1.5228787452803376 0 0 [YT]{[RE]|[WV]}SV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{I|L}P{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}V]SH{I|L}{M(Oxidation (M))|F};[YT][DV]A[VP]H{I|L}{M(Oxidation (M))|F};[{I|L}P]{[QS]|[NT]}VS{[RE]|[WV]}[{M(Oxidation (M))|F}V];[YT][PA][HD]{M(Oxidation (M))|F}VV{I|L} 4.2229;4.0319;2.9141;2.3388;1.2272 -;-;-;-;- 1087 + NaN NaN 162805.8 NaN 13403 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16793 71.27 NaN 1060500 35 0 156150 0.261 + 16019 LPSAFYIKL 9 89 526.3130884458317 1050.6116239584633 2 526.3131713867188 MULTI HCD FTMS 0 0 0 16788 338455.75 0.25459168845035973 -4 0.10753631591796875 5 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 99.75527289724121 0.004270341300239591 1 {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L} 9 0 + 91.587 0 0 8.7175 8.7175 95.067 0 0 0 60.52916427650315 11.144141363238646 11.144141363238646 16.19763938624216 0 2.4604093769761874 1.6989700043360187 0.805462187404089 0.28872548999643577 + + {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}YK{I|L}{I|L};[PS]{I|L}A{M(Oxidation (M))|F}Y{I|L}K{I|L};[TA]Y{M(Oxidation (M))|F}[VP]{I|L}K{I|L};[PS]A{I|L}{M(Oxidation (M))|F}Y{I|L}K{I|L};[PS]{I|L}A{M(Oxidation (M))|F}YK{I|L}{I|L};[TA][VP]{M(Oxidation (M))|F}Y{I|L}K{I|L};[PS]A{M(Oxidation (M))|F}{I|L}Y{I|L}K{I|L};[TA]Y{M(Oxidation (M))|F}[VP]K{I|L}{I|L} 8.7175;7.1758;5.9629;4.2783;3.7844;3.6884;3.0654;2.8719;2.7577;2.5715 +;+;-;-;-;-;-;-;-;- + 567 + NaN NaN 255486.2 NaN 13404 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16794 71.274 NaN 266060 35 0 39086 0.261 -1 VPMEDINL 8 53 473.73125752503404 945.4479621168681 2 473.73101806640625 MULTI HCD FTMS 0 0 0 16788 219625.0625 0.4075983313295601 -24 0.687408447265625 6 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 16.942295170755138 0.46913822049235215 1 {I|L}N{I|L} 3 -1 31.198 0 0 3.2998 0 0 587.2259415151128 0 587.2259415151128 0 17.385606273598313 0 0 0 0.5 0 0 0 {I|L}N{I|L} 3.2998 + + 33 NaN NaN 115841.8 NaN 13405 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16795 71.277 NaN 504460 35 0 29615 0.261 + 6319 FPFSDKLGEL 10 105 576.8002923225939 1151.5860317119877 2 576.8002319335938 MULTI HCD FTMS 0 0 0 16788 71530.140625 0.22515974392182223 11 -0.3169708251953125 7 Unmodified _FPFSDKLGEL_ CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant;CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 24.881564428377168 0.27837825820855233 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[WR]{M(Oxidation (M))|F}P 8 8 31.565 0 0 2.741 0 0 0 144.04539021385713 144.04539021385713 12.988861539154613 0 0 0 0 0.6237125054200234 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[WR]{M(Oxidation (M))|F}P 2.741 - 3459 NaN NaN 160706.3 NaN 13406 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16796 71.28 NaN 351160 35 0 33557 0.261 + -1 DSSMSEQVRES 11 89 635.7649052112549 1269.5152574893098 2 635.7658081054688 MULTI HCD FTMS 0 0 0 16788 149143.46875 0.7366235533378983 -4 0.10753631591796875 8 Oxidation (M) _DSSM(Oxidation (M))SEQVRES_ REV__SPDL1|p.E162D|1|0.18|ENSG00000040275|chr5:169593503-169593503|G/C|missense_variant 4.897010918128616 0.3974440401582579 1 YAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 -1 35.839 0 0 2.8231 0 0 228.02338844809725 0 228.02338844809725 0 22.65153777800478 0 0 0 0 0 1 0 YAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.8231 - 332 + NaN NaN 137524.5 NaN 13407 3387 16788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16798 71.285 NaN 335920 35 0 33497 0.327 + 7828 FYQRFPLSF 9 66 602.811244157672 1203.607935382144 2 602.81103515625 MULTI HCD FTMS 0 0 0 16797 146653.015625 0.28101955760809416 4 -0.1169586181640625 1 Unmodified _FYQRFPLSF_ ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF 63.960520009940105 0.0120409805053046 1 {M(Oxidation (M))|F}YQR{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F} 9 0 + 65.2 0 0 5.417 5.417 86.953 0 0 0 44.75440627993265 13.829628067253168 13.829628067253168 9.208187539523749 0 1.9604093769761874 0 0.8494850021680094 0.4247425010840047 + + {M(Oxidation (M))|F}YQR{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[AG]R{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F};{M(Oxidation (M))|F}G{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F}[{I|L}P]S{M(Oxidation (M))|F};{M(Oxidation (M))|F}YQ[{I|L}P]{M(Oxidation (M))|F}RS{M(Oxidation (M))|F};{M(Oxidation (M))|F}YQ[KA]KWS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QK[KA]WS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}[TP]V{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[AG][KA]KWS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][AG]K[KA]WS{M(Oxidation (M))|F} 5.417;4.652;3.3716;3.3655;3.2715;2.9084;2.5412;2.3755;2.1433;1.7761 +;-;+;-;-;-;-;-;-;- + 497 + NaN NaN 136084.2 NaN 13408 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16799 71.29 NaN 606670 35 0 65414 0.261 + 6443 FPIEAGDMF 9 76 521.7312459008294 1041.4479388684588 2 521.7315063476562 MULTI HCD FTMS 0 0 0 16797 152451.53125 0.6910389156645365 -5 0.137054443359375 2 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 81.61307344734483 0.005330412723537057 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 70.191 0 0 6.7397 6.7397 90.206 0 0 0 15.475373959437846 63.73721324904025 15.475373959437846 9.730749808046326 0 2.055462187404089 1.2218487496163564 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EQD{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AGD{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7397;5.8054;3.8641;2.9297 +;-;-;- + 257 NaN NaN 172650.7 NaN 13409 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16800 71.293 NaN 588790 35 0 57747 0.261 + 6453 FPIENRDVL 9 90 551.798243900542 1101.581934867884 2 551.7982788085938 MULTI HCD FTMS 0 0 0 16797 147984 0.7064665988369491 -2 0.05901336669921875 3 Unmodified _FPIENRDVL_ ENSG00000182446|ENST00000331134|NPLOC4;ENST00000576713.6_1_17:79534551-79539120:-|nuORF;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant 24.020572477871973 0.15282392193088168 1 DV{I|L} 3 6 36.669 0 0 3.3288 0 0 756.395799705275 0 756.395799705275 0 18.0854562117252 0 0 0 0.8252574989159953 0 0.7614393726401688 0 + DV{I|L} 3.3288 + + 625 NaN NaN 169426 NaN 13410 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16801 71.297 NaN 218020 35 0 15769 0.261 + 9817 HYNWLIYHL 9 63 629.8229294527882 NaN 0 629.80908203125 PEAK HCD FTMS 0 0 0 16797 15976.599609375 0.8345990709648351 -1 0.02951812744140625 4 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 8.155526934196011 0.2557262968844962 1 {I|L}NWT 4 7 25.662 0 0 2.0405 0 0 183.11736565927237 557.2290743463499 740.3464400056223 0 0 0 0 0 0 0 0 0.7614393726401688 {I|L}NWT 2.0405 - 107 + NaN NaN 121361.8 NaN 13411 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16802 71.3 NaN 207500 35 0 20266 0.263 -1 TPEIMAPIL 9 58 500.7725209121171 999.5304888910342 2 500.7726745605469 MULTI HCD FTMS 0 0 0 16797 44455.39453125 0.23806491719780185 4 -0.1169586181640625 5 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}A[{I|L}P]{I|L} 5 -1 31.07 0 0 3.1085 0 0 440.22850234199376 0 440.22850234199376 0 0.8534811358448735 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}A[{I|L}P]{I|L} 3.1085 + + 61 NaN NaN 112737.3 NaN 13412 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16803 71.303 NaN 316000 35 0 25346 0.261 -1 FYNMRMLAL 9 75 587.7902595066569 1173.5659660801136 2 588.3085327148438 MULTI HCD FTMS 0 0 0 16797 26914.111328125 0.2830744583078094 4 -0.1169586181640625 6 Oxidation (M) _FYNMRM(Oxidation (M))LAL_ ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 7.910154910731844 0.2910521888787154 1 A{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[QS]|[NT]}{M(Oxidation (M))|F}[{I|L}A] 9 -1 21.36 0 0 1.8201 0 0 130.05672914385246 0 130.05672914385246 0 9.018637558036673 0 0 0 0 0 1.4247425010840047 0 A{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[QS]|[NT]}{M(Oxidation (M))|F}[{I|L}A] 1.8201 - 288 + NaN NaN 131974.8 NaN 13413 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16804 71.306 NaN 551280 35 0 29755 0.261 + 35387 YYDVAKILI 9 114 549.3150162331442 1096.6154795330883 2 549.315673828125 MULTI HCD FTMS 0 0 0 16797 127214.5625 1 0 0 7 Unmodified _YYDVAKILI_ ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;ENSG00000101745|ENST00000262126|ANKRD12;ENST00000540578.6_1_18:9182415-9235682:+|nuORF;nc|ENSG00000101745|Q6UB98-2|ANKRD12 41.95555342248728 0.056367691549927025 1 YYDVAK{I|L}{I|L}{I|L} 9 0 + 59.592 0 0 5.4342 5.4342 89.904 0 0 0 9.235162698957282 9.235162698957282 9.235162698957282 19.169623931584034 0 1.9291746928241125 2 0 0 + + YYDVAK{I|L}{I|L}{I|L};YYDVA{I|L}{I|L}K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VDYK{I|L}{I|L}{I|L};YY[VS]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}YVAK{I|L}{I|L}{I|L};[{M(Oxidation (M))|F}T]EAYK{I|L}{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VAYK{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VDY{I|L}{I|L}K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VD{I|L}{I|L}YK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}YVA{I|L}{I|L}K{I|L} 5.4342;3.6861;3.2717;3.0428;2.4793;2.3437;2.1647;1.5237;0.97061;0.73126 +;-;-;-;-;-;-;-;-;- + 2411 NaN NaN 161385.1 NaN 13414 3388 16797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16806 71.311 NaN 1305600 35 0 178520 0.327 + 1594 AYVLNIVRF 9 99 547.8215579835019 1093.6285630338036 2 547.8217163085938 MULTI HCD FTMS 0 0 0 16805 509696.15625 0.18606468534452114 -4 0.11743927001953125 1 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 120.45040980043947 0.0012363446172167195 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F} 9 0 + 104.35 0 0 9.5418 9.5418 88.751 0 0 0 23.20055043063222 79.28965350852792 23.20055043063222 0.45757490560674796 0 3.4247425010840047 1.6989700043360187 0 1.2302046884880937 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}AA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}[{I|L}A]A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N[RV]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[R{I|L}]{I|L}VGV{M(Oxidation (M))|F} 9.5418;9.4999;8.4933;8.2012;7.9633;7.537;7.4647;7.3032;7.0738;7.0576 +;-;-;-;-;-;-;-;-;- + 1874 NaN NaN 274132.2 NaN 13415 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16807 71.316 NaN 317580 35 0 12057 0.261 + 3874 EPNKYLCNFI 10 82 620.8043883709606 1239.5942238087212 2 620.8042602539062 MULTI HCD FTMS 0 0 0 16805 163398.4375 0.107555527141492 12 -0.339874267578125 2 Unmodified _EPNKYLCNFI_ REV__ENSG00000152463|ENST00000378228|OLAH;REV__nc|ENSG00000152463|Q9NV23-2|OLAH 32.78568957990786 0.20801173326193015 1 {[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}[MT]N{M(Oxidation (M))|F}{I|L} 10 -1 + 48.152 0 0 3.8845 3.8845 82.715 0 0 0 7.332560546458353 12.231975075880328 7.332560546458353 6.505149978319906 0 0.8494850021680094 1.5228787452803376 1.555462187404089 0 {[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}[MT]N{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W{[ET]|[MV]}{[CT]|[{M(Oxidation (M))|F}G]}N{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}[MT]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[QA]{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}N[MT]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W{[ET]|[MV]}{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HM]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}T[MN]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[Y{M(Oxidation (M))|F}][Y{M(Oxidation (M))|F}]N{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[QA]{I|L}{M(Oxidation (M))|F} 3.8845;3.3597;3.3437;3.0778;2.9105;2.8189;2.766;2.7316;2.7305;2.537 -;-;-;-;-;-;-;-;-;- 2474 NaN NaN 130112.2 NaN 13416 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16808 71.319 NaN 365380 35 0 36114 0.261 + 29294 TYMETYVYF 9 64 616.7629909463006 1231.5114289594012 2 616.7626953125 MULTI HCD FTMS 0 0 0 16805 148173.015625 0.9255254900621209 -2 0.05570220947265625 3 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ ENSG00000013563|ENST00000369807|DNASE1L1 44.40701690623563 0.04511410083598184 1 YVY{M(Oxidation (M))|F} 4 5 46.938 0 0 3.8114 0 0 641.2376634207568 0 641.2376634207568 0 31.787887749990343 0 0 0 1.5 0 0 0 + YVY{M(Oxidation (M))|F} 3.8114 + + 108 NaN NaN 144108.7 NaN 13417 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16809 71.323 NaN 149480 35 0 18705 0.261 + 13686 KYPGFLLNNF 10 59 606.824741398966 1211.634929864732 2 606.8255004882812 MULTI HCD FTMS 0 0 0 16805 46293.28515625 0.25797465139375453 6 -0.17598724365234375 4 Unmodified _KYPGFLLNNF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 43.77239144664712 0.11267038882370725 1 [{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}{I|L}[KA]NN{M(Oxidation (M))|F} 10 6 + 45.512 0 0 3.7562 3.7562 80.256 0 0 0 2.302295081522722 36.2149861442097 2.302295081522722 1.3382353001069305 0 0.7887254899964358 0 0 0 [{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}{I|L}[KA]NN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}[KA]{I|L}{I|L}NN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}[KA]{I|L}NN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}{I|L}[KA]GGN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}{I|L}[KA]NGG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}[KA]{I|L}{I|L}GGN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}[KA]{I|L}{I|L}NGG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}[KA]{I|L}GGN{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L}[KA]{I|L}NGG{M(Oxidation (M))|F};[YK]{[QS]|[NT]}{I|L}[TA]V[R{M(Oxidation (M))|F}] 3.7562;3.6458;3.1053;2.9999;2.9999;2.8894;2.8894;2.3489;2.3489;1.6056 -;-;-;-;-;-;-;-;-;- 203 NaN NaN 103952.9 NaN 13418 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16810 71.326 NaN 273960 35 0 88842 0.261 -1 MPDQFDQAVVL 11 43 639.8052595502007 1277.5959661672014 2 639.8060913085938 MULTI HCD FTMS 0 0 0 16805 117154.7890625 0.5858674552508655 -4 0.11743927001953125 5 Oxidation (M) _M(Oxidation (M))PDQFDQAVVL_ ENSG00000145555|ENST00000513610|MYO10;ENST00000511972.1_1_5:16710938-16713441:-|nuORF;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10 6.1918466704503565 0.39176533041107 1 AVV{I|L} 4 -1 36.938 0 0 2.8912 0 0 877.3235951154312 0 877.3235951154312 0 32.33410649039925 0 0 0 0.5 0 0 0 AVV{I|L} 2.8912 + + 10 NaN NaN 130033.4 NaN 13419 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16811 71.329 NaN 353020 35 0 75412 0.264 + 868 AYAENIALL 9 48 489.268805616118 976.523058299036 2 489.26861572265625 MULTI HCD FTMS 0 0 0 16805 117262.25 0.08030956875013698 -6 0.163238525390625 6 Unmodified _AYAENIALL_ ENSG00000196455|ENST00000356763|PIK3R4 72.96794272382148 0.008127836904478181 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L} 9 0 + 68.394 0 0 7.0039 7.0039 93.037 0 0 0 4.594465368295886 46.510234424404686 4.594465368295886 21.95046257204389 0 2.473197507588033 0 0.3807196863200844 1.274227503252014 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEGG{I|L}A{I|L}{I|L} 7.0039;4.7561 +;- + 94 NaN NaN 131279.7 NaN 13420 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16812 71.333 NaN 86932 35 0 6785.6 0.261 -1 0 39 493.28173561315367 984.5489182931074 2 493.28179931640625 MULTI HCD FTMS 0 0 0 16805 47208.4296875 0.2087167263410149 8 -0.23177337646484375 7 NaN NaN 1 T{I|L} 2 -1 22.959 0 0 2.3319 0 0 752.4102366158708 0 752.4102366158708 0 14.006375246153906 0 0 0 0.5 0 0 0 T{I|L} 2.3319 - 9 NaN NaN 89210 NaN 13421 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16813 71.336 NaN 161880 35 0 31728 0.261 + -1 HCHTLLVL 8 36 496.7702096834322 991.5258664336644 2 496.7705383300781 MULTI HCD FTMS 0 0 0 16805 78709.625 0.6663030101658041 -5 0.1403350830078125 8 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HTLLVL_ REV__ENSG00000130766|ENST00000253063|SESN2;REV__SESN2|p.A197V|1|0.19|ENSG00000130766|chr1:28272633-28272633|C/T|missense_variant 13.50788311687929 0.4944073034352369 1 {I|L}V{I|L} 3 -1 31.198 0 0 3.1465 0 0 648.2831898419937 0 648.2831898419937 0 14.208187539523749 0 0 0 0.5 0 0 0 {I|L}V{I|L} 3.1465 + + 7 NaN NaN 100795.7 NaN 13422 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16814 71.342 NaN 173700 35 0 19428 0.261 -1 DIMKHVTLF 9 56 560.2976263916015 NaN 0 560.2984008789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _DIM(Oxidation (M))KHVTLF_ PLCL1|p.E837K|1|0.3|ENSG00000115896|chr2:198086026-198086026|G/A|missense_variant 13.90604991867851 0.22786006501039813 1 VC(Carbamidomethyl (C))E 3 -1 9.2082 0 0 0.8232 0 0 132.09513297098607 595.2902315729124 727.3853645438985 0 0 0 0 0 0 0 0 0 VC(Carbamidomethyl (C))E 0.8232 - 27 + NaN NaN 113306.7 NaN 13423 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16815 71.345 NaN 262180 35 0 35338 0.262 + 30595 VPAPPPPPAP 10 71 470.26842935998013 938.5223057867603 2 470.77020263671875 MULTI HCD FTMS 0 0 0 16805 52950.84375 1 0 0 10 Unmodified _VPAPPPPPAP_ REV__nc|ENSG00000141858|Q6SPF0|SAMD1 12.531546534597751 0.39389615866941496 1 PVSV{[CA]|SS}VS 8 -1 47.489 0 0 5.06 0 0 0 193.09821497135002 193.09821497135002 30.015005141612562 0 0 0 0 0 1.6989700043360187 0.7134679910804405 0 PVSV{[CA]|SS}VS 5.06 - 492 + NaN NaN 117591.6 NaN 13424 3389 16805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16817 71.35 NaN 430480 35 0 81599 0.327 -1 0 59 408.5640241148902 1222.6702429448706 3 408.5642395019531 MULTI HCD FTMS 0 0 0 16816 136365.5 0.045965614819234266 11 -0.3014068603515625 1 NaN NaN 1 D{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 6 -1 54.085 0 0 4.4235 0 0 531.27836806465 0 531.27836806465 0 47.09569063612989 0 0 0 2 0 0.805462187404089 0 D{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 4.4235 - 100 NaN NaN 153012.1 NaN 13425 3390 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16818 71.354 NaN 725520 35 0 126430 0.261 + 34549 YPIYGYDEL 9 92 566.7634642786195 1131.512375624039 2 566.7635498046875 MULTI HCD FTMS 0 0 0 16816 296053.5625 0.7274471149024889 -1 0.0384674072265625 2 Unmodified _YPIYGYDEL_ ENSG00000137073|ENST00000379238|UBAP2;nc|ENSG00000137073|Q5T6F2-2|UBAP2 123.09622228370866 0.0010236603636890153 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YGYDE{I|L} 9 0 + 66.437 0 0 5.8716 5.8716 89.013 0 0 0 8.851297213088884 51.83330156255241 8.851297213088884 10.983591410118294 0 1.9049471895720984 0.958607314841775 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YGYDE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GY{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[MN];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{[HG]|PP}[VS]S{[DA]|[EG]};{[YD]|[{M(Oxidation (M))|F}M]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[W{M(Oxidation (M))|F}]E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WM]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[C(Carbamidomethyl (C))R][HV]DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{[HG]|PP}{[ET]|[MV]}[QT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YGY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[C(Carbamidomethyl (C))K]GYAA{[NV]|[RG]} 5.8716;4.9009;2.9298;2.1973;2.018;1.1635;0.92228;0.86931;0.86513;0.82805 +;-;-;-;-;-;-;-;-;- + 752 NaN NaN 187309.6 NaN 13426 3390 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16819 71.358 NaN 180470 35 0 25104 0.261 + 33197 YFDEPVEL 8 48 506.2370666740052 1010.4595804148104 2 506.237060546875 MULTI HCD FTMS 0 0 0 16816 109397.7578125 0.8848234304064956 1 -0.02281951904296875 3 Unmodified _YFDEPVEL_ ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 16.942295170755138 0.46913822049235215 1 E{I|L} 2 6 24.776 0 0 2.452 0 0 750.3223612113213 0 750.3223612113213 0 19.805972749468218 0 0 0 0.3807196863200844 0 0 0 + E{I|L} 2.452 + + 30 NaN NaN 109636.3 NaN 13427 3390 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16820 71.361 NaN 214890 35 0 26797 0.261 + 10176 IFTARLYYF 9 68 597.3211033981014 1192.6276538630027 2 597.3214111328125 MULTI HCD FTMS 0 0 0 16816 70496.921875 0.3653064963836559 3 -0.08180999755859375 4 Unmodified _IFTARLYYF_ ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C 41.8396318013385 0.056899836730939755 1 YY{M(Oxidation (M))|F} 3 6 36.198 0 0 3.0351 0 0 701.4188709943375 0 701.4188709943375 0 8.762874945799766 0 0 0 1 0 0 0 + YY{M(Oxidation (M))|F} 3.0351 + + 47 NaN NaN 117989.6 NaN 13428 3390 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16821 71.364 NaN 397600 35 0 81655 0.261 + 29702 VDDARWLVL 9 76 543.8011013055855 1085.5876496779708 2 543.80126953125 MULTI HCD FTMS 0 0 0 16816 154662.078125 1 0 0 5 Unmodified _VDDARWLVL_ REV__ENSG00000180071|ENST00000399703|ANKRD18A;REV__ENSG00000230453|ENST00000684830|ANKRD18B;REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B 20.453626601364224 0.18364154288633264 1 DV{I|L} 3 -1 40.802 0 0 3.7585 0 0 740.3986429320618 0 740.3986429320618 0 11.90868637021957 0 0 0 0.8494850021680094 0 0.7614393726401688 0 DV{I|L} 3.7585 - 292 NaN NaN 153319.8 NaN 13429 3390 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16822 71.368 NaN 234030 35 0 23175 0.261 + -1 YPLTCWMPS 9 75 577.7545581922382 1153.4945634512762 2 577.7542724609375 MULTI HCD FTMS 0 0 0 16816 39993.5078125 0.5243945537702304 1 -0.02281951904296875 6 Carbamidomethyl (C) _YPLTC(Carbamidomethyl (C))WMPS_ REV__ENST00000296530.12_1_4:159092151-159092343:-|nuORF 16.942295170755138 0.21397866736869717 1 YP{I|L}YC 5 -1 61.81 0 0 5.3585 0 0 0 511.19355188541243 511.19355188541243 47.346368802282015 0 0 0 0 0.6237125054200234 2 0 0 YP{I|L}YC 5.3585 - 132 + NaN NaN 115141.4 NaN 13430 3390 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16824 71.373 NaN 3935100 35 0 1059600 0.327 + 23650 RPVSVWDVL 9 103 535.8031112556107 1069.5916695780213 2 535.8033447265625 MULTI HCD FTMS 0 0 0 16823 2558309 0.9958599728409858 2 -0.058990478515625 1 Unmodified _RPVSVWDVL_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 86.33184430468982 0.004622086694044132 1 [VP]RSVWDV{I|L} 9 2 + 81.856 0 0 7.653 7.653 91.865 0 0 0 10.484550065040281 12.838096733120281 10.484550065040281 9.876954943324549 0 1.5189301784845295 1.3979400086720375 1.0114393726401687 0 [VP]RSVWDV{I|L};[VP]SRVWDV{I|L};[RP]VSVWDV{I|L};[DV]WSVPRV{I|L};[VP]RSVDWV{I|L};[VP]RSVWD{I|L}V;[RV]PSVWDV{I|L};[DV]WSVRPV{I|L};[VP]SVRWDV{I|L};[VS]PRVWDV{I|L} 7.653;6.7296;6.6728;6.5626;6.482;6.4527;6.4151;6.277;5.9353;5.7041 -;-;+;-;-;-;-;-;-;- + 8648 NaN NaN 670840.3 NaN 13431 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16825 71.377 NaN 2059700 35 0 473670 0.261 + 8179 GPSLPWPPVL 10 106 531.802749531888 1061.590946130576 2 532.3189086914062 MULTI HCD FTMS 0 0 0 16823 68225.7265625 0.9896392016608645 -4 0.1169891357421875 2 Unmodified _GPSLPWPPVL_ REV__ENST00000356487.9_2_19:34856112-34856244:+|nuORF 20.453626601364224 0.3197956946484955 1 VPQR 4 -1 28.602 0 0 2.6943 0 0 130.06308794368573 448.22883020572505 578.2919181494108 0 0 0 0 0 0.3252574989159953 0 0 0.7302046884880937 VPQR 2.6943 - 1109 + NaN NaN 392742.1 NaN 13432 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16826 71.381 NaN 1863500 35 0 238980 0.261 + 6759 FPQKWPDLL 9 114 572.3135319264283 1142.6125109196564 2 572.3135986328125 MULTI HCD FTMS 0 0 0 16823 836331.75 0.7884157809148972 -2 0.06128692626953125 3 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 129.77232118876745 0.0006187813247758304 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L} 9 0 + 86.937 0 0 7.6086 7.6086 90.837 0 0 0 17.3840518759999 9.430087952002154 9.430087952002154 9.208187539523749 0 2.1549471895720984 1.5228787452803376 1.2786596949921218 0.5010912013506126 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}DP{I|L};{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}DP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWP[{I|L}V]E;{M(Oxidation (M))|F}P[AG]KWPD{I|L}{I|L};[QP]{M(Oxidation (M))|F}KWPD{I|L}{I|L} 7.6086;6.8027;6.7833;6.2238;6.0872;5.9774;5.4179;5.4057;5.2813;4.8748 +;-;-;-;+;-;-;-;-;- + 9707 NaN NaN 361017.2 NaN 13433 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16827 71.384 NaN 598220 35 0 116950 0.261 + 16234 LPWSKAWEL 9 85 565.3057164389593 1128.5968799447185 2 565.3057861328125 MULTI HCD FTMS 0 0 0 16823 344057.78125 0.251983787310133 6 -0.1704864501953125 4 Unmodified _LPWSKAWEL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 96.93554129104106 0.004344229100022454 1 {I|L}PWSKAWE{I|L} 9 0 + 92.036 0 0 8.1549 8.1549 90.515 0 0 0 21.45242492728684 8.424778212679485 8.424778212679485 8.424778212679485 0 2.635151878060192 2 1.5044321917401078 0.3807196863200844 + + {I|L}PWSKAWE{I|L};[{I|L}P]WSKAWE{I|L};[WP]{I|L}SKAWE{I|L};[VP]{[WT]|[RM]}KAWE{I|L} 8.1549;7.4084;5.3493;3.2449 +;+;-;- + 798 + NaN NaN 170510.4 NaN 13434 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16828 71.387 NaN 666780 35 0 100430 0.261 + 24541 RYLETILEI 9 76 575.3294910876635 1148.644429242127 2 575.3297729492188 MULTI HCD FTMS 0 0 0 16823 375732.6875 0.6042882519423154 4 -0.1147003173828125 5 Unmodified _RYLETILEI_ ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP 36.506200033944 0.08138327636155518 1 {[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}{I|L}E{I|L} 10 5 + 65.495 0 0 5.7019 5.7019 89.267 0 0 0 13.022562268522577 38.58349385648225 13.022562268522577 12.971736348700098 0 1.2302046884880937 1.0969100130080565 0.3807196863200844 0 {[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}{I|L}G[KG];{[QN]|[E{I|L}]|[KN]}{I|L}[VP][HS]{I|L}E{I|L};[VP][HV]{[ET]|[MV]}{I|L}{I|L}E{I|L};{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}AE{I|L}{I|L}T[KG];{[DS]|[MA]|[CV]|TT}VV[YV]{I|L}{I|L}G[KG];[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L}{I|L}T[KG] 5.7019;4.5726;4.15;3.3077;2.6231;1.6542;0.74581 -;-;-;-;-;-;- 791 NaN NaN 185690.4 NaN 13435 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16829 71.391 NaN 662030 35 0 138550 0.261 -1 DDCELCLESS 10 83 585.7179266192262 1169.4213003052523 2 585.718505859375 MULTI HCD FTMS 0 0 0 16823 316428.3125 0.9292203691826487 1 -0.02948760986328125 6 Carbamidomethyl (C) _DDCELC(Carbamidomethyl (C))LESS_ ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5 3.5964929083625545 0.45626689593999237 1 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 46.938 0 0 4.0138 0 0 649.1672230451187 0 649.1672230451187 0 32.93128452330364 0 0 0 1.5 0 0 0 E{M(Oxidation (M))|F}{I|L}{I|L} 4.0138 - 359 NaN NaN 189228 NaN 13436 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16830 71.394 NaN 486990 35 0 79964 0.261 + 7747 FYMDTSHLF 9 82 580.7578651117204 1159.5011772902408 2 580.7578125 MULTI HCD FTMS 0 0 0 16823 200489.203125 0.8549907106706748 1 -0.02948760986328125 7 Unmodified _FYMDTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 107.99703571036002 0.003269392969029945 1 {M(Oxidation (M))|F}YMDTSH{I|L}{M(Oxidation (M))|F} 9 0 + 88.911 0 0 7.668 7.668 94.762 0 0 0 68.7684116877481 16.478174818886373 16.478174818886373 28.51342204748164 0 2.805462187404089 0 1.305462187404089 0 + + {M(Oxidation (M))|F}YMDTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]MDTSH{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[C(Carbamidomethyl (C))C][RH]TSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[{I|L}T][HD]A{M(Oxidation (M))|F};[C(Carbamidomethyl (C))C]T[RH]SH{I|L}{M(Oxidation (M))|F};[YT][{I|L}A][HD]MY{M(Oxidation (M))|F};[YT][HS][VP]{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 7.668;5.2089;4.3662;3.2892;2.6242;2.4416;2.0302;1.8031 +;+;-;-;-;-;-;- + 886 + NaN NaN 157174.3 NaN 13437 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16831 71.397 NaN 137610 35 0 16809 0.262 + 27961 TFDAGLQAF 9 53 485.23745220857853 968.4603514839571 2 485.23736572265625 MULTI HCD FTMS 0 0 0 16823 59770.6015625 0.8813827825091997 -1 0.02281951904296875 8 Unmodified _TFDAGLQAF_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 41.8396318013385 0.056899836730939755 1 QA{M(Oxidation (M))|F} 3 6 45.005 0 0 4.6471 0 0 604.286057108341 0 604.286057108341 0 39.9607625286837 0 0 0 1.5 0 0 0.3807196863200844 + QA{M(Oxidation (M))|F} 4.6471 + + 38 + NaN NaN 101404.1 NaN 13438 3391 16823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16833 71.402 NaN 1111900 35 0 97045 0.327 + 4714 EYQKVWNLF 9 109 613.8136951048748 1225.6128372765495 2 613.8140869140625 MULTI HCD FTMS 0 0 0 16832 548705.9375 0.039048545028669446 15 -0.42494964599609375 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 111.30893174071366 0.002728716625640322 1 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 81.045 0 0 6.6126 6.6126 86.463 0 0 0 4.792969887872374 14.973024840566467 4.792969887872374 4.792969887872374 0 2.610924374808178 0.958607314841775 2.6237125054200234 0.2614393726401688 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YN]A{[TV]|[{I|L}S]}VWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};[YN]A{[TV]|[{I|L}S]}VWGG{I|L}{M(Oxidation (M))|F} 6.6126;6.2216;5.8613;5.8613;5.7532;5.6099;5.4738;5.1136;5.101;5.0055 +;-;-;-;-;-;-;-;-;- + 4272 NaN NaN 266785.2 NaN 13439 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16834 71.407 NaN 394740 35 0 31179 0.261 + 4833 EYYRGFTLF 9 71 598.291333426794 1194.568113920388 2 598.2927856445312 MULTI HCD FTMS 0 0 0 16832 162056.421875 0.5968602660420845 -1 0.02948760986328125 2 Unmodified _EYYRGFTLF_ ENSG00000179335|ENST00000395066|CLK3;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3 38.175570920033316 0.07371992880350783 1 T{I|L}{M(Oxidation (M))|F} 3 6 36.911 0 0 3.0899 0 0 815.3594277394812 0 815.3594277394812 0 17.447274948966935 0 0 0 1 0 1 0 + T{I|L}{M(Oxidation (M))|F} 3.0899 + + 208 NaN NaN 145748.6 NaN 13440 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16835 71.41 NaN 327880 35 0 53228 0.261 + 1233 AYLPKILQI 9 68 529.8341594801072 1057.6537660270144 2 529.8342895507812 MULTI HCD FTMS 0 0 0 16832 102590.875 0.11653958537866096 8 -0.22948455810546875 3 Unmodified _AYLPKILQI_ ENSG00000120800|ENST00000261637|UTP20 39.957323273324995 0.06554068735427583 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y 4 6 41.682 0 0 3.941 0 0 0 544.3856745565644 544.3856745565644 16.46591250700361 0 0 0 0 1 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y 3.941 - 158 NaN NaN 134523.6 NaN 13441 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16836 71.413 NaN 468220 35 0 70188 0.261 + 10449 IPDEVFDAV 9 70 502.75042582819697 1003.486298723194 2 502.7505798339844 MULTI HCD FTMS 0 0 0 16832 153765.40625 0.8044631130943827 -1 0.02948760986328125 4 Unmodified _IPDEVFDAV_ ENSG00000066557|ENST00000370952|LRRC40;LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}DAV 4 5 42.493 0 0 4.2345 0 0 553.2738739010196 0 553.2738739010196 0 24.47235328539264 0 0 0 1.055462187404089 0 0 0 + {M(Oxidation (M))|F}DAV 4.2345 + + 263 NaN NaN 145590.1 NaN 13442 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16837 71.417 NaN 563210 35 0 105110 0.261 + 18446 MPVLEQSVL 9 77 508.2782476532618 1014.5419423733236 2 508.2781677246094 MULTI HCD FTMS 0 0 0 16832 189690.8125 0.48339537993576287 -3 0.0907745361328125 5 Unmodified _MPVLEQSVL_ ENSG00000073614|ENST00000399788|KDM5A;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 47.594388314883695 0.03493607795751234 1 {I|L}EQSV{I|L} 6 3 65.667 0 0 6.4726 0 0 327.1606617658219 0 327.1606617658219 0 50.18237211568909 0 0 0 2.2302046884880937 0 0.8494850021680094 0 + {I|L}EQSV{I|L} 6.4726 + + 360 NaN NaN 165455.8 NaN 13443 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16838 71.42 NaN 235440 35 0 20420 0.261 + 4501 EYISIALRI 9 57 539.3187701384826 1076.622987343765 2 539.3187255859375 MULTI HCD FTMS 0 0 0 16832 20127.763671875 0.02732651119253067 22 -0.6105880737304688 6 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 43.77239144664712 0.04802738721622131 1 [YE]{I|L}S{I|L}A{I|L}R{I|L} 9 0 + 44.587 0 0 4.1414 4.1414 89.51 0 0 0 17.471799572732465 9.889917747712644 9.889917747712644 44.5872875024979 0 1.0484550065040281 0 0 0 + + [YE]{I|L}S{I|L}A{I|L}R{I|L} 4.1414 + + 129 + NaN NaN 123580.8 NaN 13444 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16839 71.423 NaN 401100 35 0 61869 0.261 + 14596 LFNPFTSLTF 10 71 593.8114635075458 NaN 0 593.8005981445312 PEAK HCD FTMS 0 0 0 16832 15040.5576171875 0.6906556405934206 -1 0.02948760986328125 7 Unmodified _LFNPFTSLTF_ REV__OR6C74|p.T73Lfs*62|1|0.26|ENSG00000197706|chr12:55247503-55247503|A/-|frameshift_variant 9.38312468134398 0.33215363477037435 1 {I|L}W 2 -1 5.9691 0 0 0.50346 0 0 620.3176158805228 263.1035250299438 883.4211409104666 0 0 0 0 0 0 0 0 0 {I|L}W 0.50346 - 39 + NaN NaN 159335.1 NaN 13445 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16840 71.427 NaN 355810 35 0 59000 0.262 + 32887 YAAAGSAYLL 10 63 500.2600158555183 998.5054787778366 2 500.26025390625 MULTI HCD FTMS 0 0 0 16832 71224.1328125 0.36253184141838335 -3 0.0907745361328125 8 Unmodified _YAAAGSAYLL_ REV__ENSG00000090530|ENST00000319332|P3H2 25.399314129420986 0.2735354021946395 1 {I|L}NEAC{I|L} 6 -1 38.677 0 0 3.8735 0 0 337.19754646427214 0 337.19754646427214 0 27.22357194224834 0 0 0 1.2302046884880937 0 0 0 {I|L}NEAC{I|L} 3.8735 - 36 NaN NaN 136369.2 NaN 13446 3392 16832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16842 71.432 NaN 1812200 35 0 298910 0.327 + 16020 LPSAFYIKL 9 93 526.3130884458317 1050.6116239584633 2 526.3131713867188 MULTI HCD FTMS 0 0 0 16841 1133834.375 0.8528878825498115 2 -0.0557098388671875 1 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 122.17920374332846 0.0010792739174387011 1 {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L} 9 0 + 103.75 0 0 9.8754 9.8754 96.749 0 0 0 69.11877073275114 5.865743447727638 5.865743447727638 20.013487579716767 0 2.4489700043360187 1.6989700043360187 0.805462187404089 0.2614393726401688 + + {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}YK{I|L}{I|L};[PS]{I|L}A{M(Oxidation (M))|F}Y{I|L}K{I|L};[PS]A{I|L}{M(Oxidation (M))|F}Y{I|L}K{I|L};[PS]A{M(Oxidation (M))|F}Y{I|L}{I|L}K{I|L};[PS]{I|L}A{M(Oxidation (M))|F}YK{I|L}{I|L};[PS]A{I|L}{M(Oxidation (M))|F}YK{I|L}{I|L};[{I|L}P]{[{M(Oxidation (M))|F}H]|[RQ]}R{I|L}R{I|L};[PS]A{M(Oxidation (M))|F}Y{I|L}K{I|L}{I|L} 9.8754;7.9705;6.6605;5.487;5.2168;4.3731;4.177;3.9068;3.2729;3.0631 +;+;-;-;-;-;-;-;-;- + 1009 + NaN NaN 356789.4 NaN 13447 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16843 71.436 NaN 480160 35 0 81170 0.261 -1 VPMEDINL 8 54 473.73125752503404 945.4479621168681 2 473.7311706542969 MULTI HCD FTMS 0 0 0 16841 311173.3125 0.5775011352781823 -18 0.5326995849609375 2 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 42.09456458481378 0.20402248593209013 1 D{I|L}N{I|L} 4 -1 45.349 0 0 4.7966 0 0 472.19908339668126 0 472.19908339668126 0 23.156753288559813 0 0 0 0.9247425010840047 0 0.3807196863200844 0.4247425010840047 D{I|L}N{I|L} 4.7966 + + 71 NaN NaN 152514.2 NaN 13448 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16844 71.44 NaN 805180 35 0 108590 0.261 + 19332 NPAVTVAMVCT 11 88 553.2721302140659 1104.5297074949317 2 553.291015625 MULTI HCD FTMS 0 0 0 16841 19263.07421875 0.9011973604871131 2 -0.0557098388671875 3 Unmodified _NPAVTVAMVCT_ ENSG00000171885|ENST00000383168|AQP4;nc|ENSG00000171885|P55087-2|AQP4 13.614867670302875 0.33845562336951207 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 8 + 77.387 0 0 7.0064 7.0064 94.301 0 0 0 20.41202772037167 6.786662482156345 6.786662482156345 42.79885926180398 0 0 2 1.7544321917401078 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[HC]VE{I|L}{[DS]|[MA]|[CV]|TT}VG{M(Oxidation (M))|F};[HC]V[PS]{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[HC][WP]{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[C(Carbamidomethyl (C))S][Y{I|L}]{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[HN][QT][VG]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[HN][YR]{[NV]|[RG]}VG{M(Oxidation (M))|F};[HC]VE[PA][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[HC]V[PS]{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[HC][WP]{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 7.0064;3.1315;3.0207;2.9744;2.3416;1.7773;1.6785;1.5494;1.5494;1.5079 -;-;-;-;-;-;-;-;-;- 1224 NaN NaN 217541.8 NaN 13449 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16845 71.443 NaN 597020 35 0 71987 0.261 + 6444 FPIEAGDMF 9 70 521.7312459008294 1041.4479388684588 2 521.7313232421875 MULTI HCD FTMS 0 0 0 16841 220612.078125 1 0 0 4 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 71.13359017698441 0.008721403657255008 1 EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 51.65 0 0 4.9594 0 0 357.2048483194225 0 357.2048483194225 0 47.67010980380633 0 0 0 2.1307196863200843 0 0.4247425010840047 0 + EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9594 + + 165 NaN NaN 178402.4 NaN 13450 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16846 71.446 NaN 457620 35 0 23152 0.261 + 26907 SYLDQVKLQF 10 99 620.8321511560848 1239.6497493789695 2 620.8323364257812 MULTI HCD FTMS 0 0 0 16841 178634 1 0 0 5 Unmodified _SYLDQVKLQF_ ENSG00000169375|ENST00000394947|SIN3A 70.92866715596459 0.016484948974345597 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}AG{M(Oxidation (M))|F} 11 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 61.105 5.2288 2.0907 4.9292 4.9292 61.466 0 0 0 0 44.360468438865084 0 0 0 2.7104093769761874 0 0 0.23965182871044374 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}AG{M(Oxidation (M))|F} 4.9292 - 2799 + NaN NaN 153328.4 NaN 13451 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16847 71.45 NaN 318970 35 0 23786 0.261 -1 WDMCNYVVPA 10 74 635.7649052112549 1269.5152574893098 2 635.7656860351562 MULTI HCD FTMS 0 0 0 16841 95567.90625 0.47201242720820213 2 -0.0557098388671875 6 Carbamidomethyl (C),Oxidation (M) _WDM(Oxidation (M))C(Carbamidomethyl (C))NYVVPA_ ENSG00000165029|ENST00000374736|ABCA1 3.944395688203298 0.4544253912184634 1 VQAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 -1 40.315 0 0 3.1756 0 0 163.93989235434725 0 163.93989235434725 0 33.32563782453214 0 0 0 0 0 0.9247425010840047 0 VQAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3.1756 - 549 + NaN NaN 135470.7 NaN 13452 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16848 71.453 NaN 204800 35 0 12062 0.261 + 7829 FYQRFPLSF 9 70 602.811244157672 1203.607935382144 2 602.8109741210938 MULTI HCD FTMS 0 0 0 16841 119114.4765625 0.22824963650189822 9 -0.25909423828125 7 Unmodified _FYQRFPLSF_ ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF 31.26834338654808 0.10542797264966089 1 WS{M(Oxidation (M))|F} 3 7 29.935 0 0 2.4871 0 0 765.422166892775 0 765.422166892775 0 7.945312593723983 0 0 0 0.8252574989159953 0 0 0 WS{M(Oxidation (M))|F} 2.4871 - 268 NaN NaN 115011 NaN 13453 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16849 71.456 NaN 404480 35 0 107970 0.262 + -1 SYMPCMLI 8 57 515.7243763452332 1029.4341997572662 2 515.724609375 MULTI HCD FTMS 0 0 0 16841 132219.6875 0.9322463739376521 -2 0.058990478515625 8 Carbamidomethyl (C),Oxidation (M) _SYM(Oxidation (M))PC(Carbamidomethyl (C))MLI_ REV__ENST00000540992.1_1_12:16666501-16667302:+|nuORF 6.354104778181461 0.5325651638111438 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EA 4 -1 28.416 0 0 2.7604 0 0 0 582.2108470563475 582.2108470563475 12.98332479720628 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EA 2.7604 - 69 NaN NaN 145538.4 NaN 13454 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16850 71.46 NaN 170460 35 0 23247 0.261 + 34514 YPFSMCLFF 9 64 577.7545581922382 1153.4945634512762 2 577.7560424804688 MULTI HCD FTMS 0 0 0 16841 56537.51953125 0.7413195027768741 4 -0.1114959716796875 9 Unmodified _YPFSMCLFF_ ENST00000242719.3_1_1:51738308-51738467:+|nuORF 7.910154910731844 0.2910521888787154 1 YP{I|L}YC[WY]{M(Oxidation (M))|F} 8 5 + 52.062 0 0 4.5134 4.5134 81.741 0 0 0 35.07183756753818 8.416375079047498 8.416375079047498 2.5527250510330575 0 0 1.5228787452803376 0 0 YP{I|L}YC[WY]{M(Oxidation (M))|F};YP{I|L}YC{[{M(Oxidation (M))|F}C]|[YS]}V{M(Oxidation (M))|F} 4.5134;4.2921 -;- 41 + NaN NaN 106043.8 NaN 13455 3393 16841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16852 71.465 NaN 3763600 35 0 509950 0.327 + 1595 AYVLNIVRF 9 99 547.8215579835019 1093.6285630338036 2 547.8218383789062 MULTI HCD FTMS 0 0 0 16851 2049673.25 0.7482336361455189 1 -0.02283477783203125 1 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 141.82661023413823 1.746659319327287E-05 1 AYV{I|L}N{I|L}VR{M(Oxidation (M))|F} 9 0 + 119.62 0 0 10.938 10.938 94.215 0 0 0 67.11372217122786 14.973024840566467 14.973024840566467 9.208187539523749 0 2.6549471895720984 1.6989700043360187 0 0.8737125054200234 + + AYV{I|L}N{I|L}VR{M(Oxidation (M))|F};AYV{I|L}GG{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}V{I|L}GV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}{I|L}AA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}V{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VN{I|L}RV{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VGG{I|L}{I|L}VR{M(Oxidation (M))|F} 10.938;10.096;8.9678;8.8068;7.9613;7.4856;7.3833;7.3245;6.9225;6.9088 +;-;-;-;-;-;-;-;-;- + 2352 + NaN NaN 578019.1 NaN 13456 3394 16851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16853 71.469 NaN 1890000 35 0 206730 0.261 + 12951 KYIDYIFNV 9 113 587.8104035990881 1173.606254264976 2 587.8110961914062 MULTI HCD FTMS 0 0 0 16851 1030906.4375 0.523539681790008 -3 0.09186553955078125 2 Unmodified _KYIDYIFNV_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 114.18643581695662 0.002258955990713129 1 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV 9 2 + 93.599 0 0 7.9753 7.9753 91.379 0 0 0 9.731975075880328 16.478174818886373 9.731975075880328 9.208187539523749 0 2.274227503252014 1.3979400086720375 0.9247425010840047 0.3807196863200844 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}NV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}GGV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DYK{I|L}{M(Oxidation (M))|F}NV;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}KY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]DYK{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DY{I|L}K{M(Oxidation (M))|F}NV 7.9753;7.1907;7.1498;7.1461;6.3652;6.3615;6.2313;5.7344;5.4467;5.1216 -;-;-;+;-;-;-;-;-;- + 10038 NaN NaN 372495.7 NaN 13457 3394 16851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16854 71.473 NaN 510790 35 0 42238 0.261 + 29069 TYGDAGLTYTF 11 72 604.7780842180225 1207.541615502845 2 604.7781982421875 MULTI HCD FTMS 0 0 0 16851 172305.046875 0.7658233957639273 -1 0.03287506103515625 3 Unmodified _TYGDAGLTYTF_ ENSG00000189046|ENST00000429722|ALKBH2 152.88595553498965 6.361237294962641E-05 1 [YT]GDAG{I|L}TYT{M(Oxidation (M))|F} 11 0 + 105.12 0 0 8.705 8.705 91.684 0 0 0 21.091223126737646 71.5796323700287 21.091223126737646 9.106607529462238 0 2.6747425010840047 1.5228787452803376 1.7971062485323517 0 + + [YT]GDAG{I|L}TYT{M(Oxidation (M))|F};[YT]GDQ{I|L}TYT{M(Oxidation (M))|F};[YT]GDAG{I|L}T{M(Oxidation (M))|F}[YT];{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}AG{I|L}TYT{M(Oxidation (M))|F};[YT]GDQ{I|L}T{M(Oxidation (M))|F}[YT];{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}Q{I|L}TYT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}AG{I|L}T{M(Oxidation (M))|F}[YT];[YT]T{[NV]|[RG]}{[CP]|[EA]}YT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}Q{I|L}T{M(Oxidation (M))|F}[YT];[YT]YH{I|L}N[HN]{M(Oxidation (M))|F} 8.705;7.9509;6.632;6.1404;5.8779;5.3862;4.0674;3.8097;3.3133;3.2192 +;-;-;-;-;-;-;-;-;- + 1446 NaN NaN 161971 NaN 13458 3394 16851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16855 71.476 NaN 263480 35 0 22767 0.261 + 29295 TYMETYVYF 9 68 616.7629909463006 1231.5114289594012 2 616.7623901367188 MULTI HCD FTMS 0 0 0 16851 101748.40625 0.6355458391688585 3 -0.07862091064453125 4 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ ENSG00000013563|ENST00000369807|DNASE1L1 44.40701690623563 0.04511410083598184 1 YVY{M(Oxidation (M))|F} 4 5 43.928 0 0 3.567 0 0 641.2364369123062 0 641.2364369123062 0 27.52820042726753 0 0 0 1.3494850021680094 0 0 0 + YVY{M(Oxidation (M))|F} 3.567 + + 193 NaN NaN 119457.1 NaN 13459 3394 16851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16856 71.479 NaN 389040 35 0 24220 0.261 + 8320 GYAKLVDFGF 10 83 558.7892476612257 1115.5639423892512 2 558.7898559570312 MULTI HCD FTMS 0 0 0 16851 45542.00390625 0.5916046582432638 1 -0.02283477783203125 5 Unmodified _GYAKLVDFGF_ ENSG00000185532|ENST00000373980|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976-3|PRKG1;nc|ENSG00000185532|Q13976|PRKG1 74.19965305603844 0.012609120674105788 1 {I|L}PRVD{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 8 5 64.097 0 0 5.7457 0 0 166.04326099467158 0 166.04326099467158 0 46.190461520444174 0 0 0 1.9604093769761874 0 0.25 0.28872548999643577 {I|L}PRVD{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 5.7457 - 582 + NaN NaN 132185.9 NaN 13460 3394 16851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16857 71.482 NaN 272400 35 0 22934 0.261 + 30675 VPELEEVARVL 11 66 627.3585594356883 1252.7025659381766 2 627.3582153320312 MULTI HCD FTMS 0 0 0 16851 66495.2109375 0.549768873102565 -3 0.09186553955078125 6 Unmodified _VPELEEVARVL_ ENSG00000104881|ENST00000360957|PPP1R13L 60.94344597037026 0.036480086864956726 1 VPE{I|L}EEVA 8 3 78.159 0 0 6.2393 0 0 0 383.2408541315063 383.2408541315063 35.20854767402343 0 0 0 0 2.7416440611282624 0 0.28872548999643577 0 + VPE{I|L}EEVA 6.2393 + + 1051 + NaN NaN 124723.4 NaN 13461 3394 16851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16859 71.487 NaN 1771800 35 0 388900 0.327 + 869 AYAENIALL 9 62 489.268805616118 976.523058299036 2 489.26885986328125 MULTI HCD FTMS 0 0 0 16858 1460128 1 0 0 1 Unmodified _AYAENIALL_ ENSG00000196455|ENST00000356763|PIK3R4 139.13845188893973 5.0762478717762276E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L} 9 0 + 108.7 0 0 11.131 11.131 97.866 0 0 0 16.980523937757752 65.14645333192 16.980523937757752 25.757659435244733 0 2.6549471895720984 1.2218487496163564 0.6549471895720985 1.6549471895720984 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEGG{I|L}A{I|L}{I|L};[{I|L}A]{I|L}N{[CP]|[EA]}{I|L}AY;[{I|L}A]{I|L}GG{[CP]|[EA]}{I|L}AY 11.131;8.4936;3.2845;2.0607 +;-;-;- + 285 NaN NaN 352237.3 NaN 13462 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16860 71.492 NaN 829120 35 0 64402 0.261 + 34550 YPIYGYDEL 9 106 566.7634642786195 1131.512375624039 2 566.7636108398438 MULTI HCD FTMS 0 0 0 16858 136138.828125 0.3345131094166011 4 -0.11145782470703125 2 Unmodified _YPIYGYDEL_ ENSG00000137073|ENST00000379238|UBAP2;nc|ENSG00000137073|Q5T6F2-2|UBAP2 67.34385681178166 0.00994769994983633 1 [Y{I|L}]PY[YG]DE{I|L} 9 2 + 47.755 0 0 4.2204 4.2204 87.306 0 0 0 13.17560522608052 24.795700335259532 13.17560522608052 15.07084478097105 0 1.4143943297944483 1.154901959985743 0 0 [Y{I|L}]PY[YG]DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Y[YG]DE{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[C(Carbamidomethyl (C))R][HV]DE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]{[ES]|[DT]|[{I|L}C]}Y{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QN]|[E{I|L}]|[KN]}[YG]PY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QN]|[E{I|L}]|[KN]}T{[ES]|[DT]|[{I|L}C]}Y{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y[YG]PY{I|L};{[QN]|[E{I|L}]|[KN]}DY[YG]PY{I|L} 4.2204;2.8885;1.4864;1.0208;0.6443;0.6443;0.18219;0.026568 -;+;-;-;-;-;-;- + 843 NaN NaN 210917.9 NaN 13463 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16861 71.495 NaN 362600 35 0 122560 0.261 -1 MPDQFDQAVVL 11 44 639.8052595502007 1277.5959661672014 2 639.8054809570312 MULTI HCD FTMS 0 0 0 16858 158084.484375 0.7905486008430876 2 -0.0557861328125 3 Oxidation (M) _M(Oxidation (M))PDQFDQAVVL_ ENSG00000145555|ENST00000513610|MYO10;ENST00000511972.1_1_5:16710938-16713441:-|nuORF;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10 6.1918466704503565 0.39176533041107 1 AVV{I|L} 4 -1 36.938 0 0 2.8912 0 0 877.3246937482437 0 877.3246937482437 0 36.938200260161125 0 0 0 0.5 0 0 0 AVV{I|L} 2.8912 + + 8 NaN NaN 142188.5 NaN 13464 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16862 71.499 NaN 335740 35 0 67682 0.264 -1 0 58 408.5640241148902 1222.6702429448706 3 408.564453125 MULTI HCD FTMS 0 0 0 16858 156745.53125 0.05283524582151459 16 -0.45064544677734375 4 NaN NaN 1 D{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 6 -1 52.58 0 0 4.3004 0 0 531.2802601544937 0 531.2802601544937 0 47.09569063612989 0 0 0 2 0 0.805462187404089 0 D{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 4.3004 - 81 NaN NaN 129469.9 NaN 13465 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16863 71.502 NaN 931570 35 0 156180 0.261 + 15218 LNTLDHTTEIS 11 97 622.3127420734417 NaN 0 622.2957153320312 PEAK HCD FTMS 0 0 0 16858 43993.33203125 1 0 0 5 Unmodified _LNTLDHTTEIS_ ENSG00000138101|ENST00000406818|DTNB;ENST00000472690.5_1_2:25819066-25872751:-|nuORF;ENST00000493538.5_1_2:25803688-25875529:-|nuORF;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-7|DTNB 10.799506525563784 0.3114850535502259 1 {I|L}Y{M(Oxidation (M))|F}Y[DP]G 7 9 24.358 0 0 1.9602 0 0 165.11480888023158 219.07769190006096 384.19250078029256 0 0 0 0 0 0 0 1.066901560044258 0 {I|L}Y{M(Oxidation (M))|F}Y[DP]G 1.9602 - 2218 + NaN NaN 233405.2 NaN 13466 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16864 71.505 NaN 500460 35 0 71985 0.263 + 18115 MPDFDLHL 8 55 494.23385529338344 986.4531576535669 2 494.23370361328125 MULTI HCD FTMS 0 0 0 16858 219346.046875 0.15916109083365979 -10 0.293426513671875 6 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 60.38955033654506 0.06344887527228933 1 MPD 3 5 50.916 0 0 5.1616 0 0 0 640.3106169864484 640.3106169864484 8.22559982972642 0 0 0 0 0.7742275032520141 1.5228787452803376 0.3252574989159953 0 + MPD 5.1616 + + 73 + NaN NaN 166111.4 NaN 13467 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16865 71.509 NaN 285270 35 0 23140 0.261 + 30676 VPELEEVARVL 11 69 627.3585594356883 1252.7025659381766 2 627.8609619140625 MULTI HCD FTMS 0 0 0 16858 57121.578125 0.8065482136126181 1 -0.032928466796875 7 Unmodified _VPELEEVARVL_ ENSG00000104881|ENST00000360957|PPP1R13L 60.94344597037026 0.036480086864956726 1 VPE{I|L}EEVARV{I|L} 11 0 + 103.12 0 0 8.2321 8.2321 94.385 0 0 0 76.92526408490178 11.615010663094239 11.615010663094239 16.48780322035236 0 3.841129063296272 0 0 0 + + VPE{I|L}EEVARV{I|L};[VP]E{I|L}EEVARV{I|L};[EP]V{I|L}EEVARV{I|L};[EP]{I|L}VEEVARV{I|L};[VP]E{I|L}E[W{I|L}]GVV{I|L};[EP]V{I|L}E[W{I|L}]GVV{I|L};[EP]{I|L}[DN]KVAGVV{I|L};[VP]E{I|L}{[VA]|[{I|L}G]}EERV{I|L};[EP]{I|L}VE[W{I|L}]GVV{I|L};[EP]V{I|L}{[VA]|[{I|L}G]}EERV{I|L} 8.2321;6.9159;6.7174;5.9374;5.1014;4.9029;4.6142;4.3072;4.1229;4.1087 +;+;-;-;-;-;-;-;-;- + 931 + NaN NaN 121780 NaN 13468 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16866 71.512 NaN 150540 35 0 18775 0.261 + 22466 QQYAVFENIF 10 51 629.8087122251125 1257.6028715170248 2 629.8088989257812 MULTI HCD FTMS 0 0 0 16858 60591.82421875 0.053608962061011865 18 -0.499359130859375 8 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 16.149105407346934 0.3600587335443843 1 T{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F} 6 -1 32.625 0 0 2.5942 0 0 560.2505360334 0 560.2505360334 0 26.42667503568731 0 0 0 0.5 0 1.3494850021680094 0 T{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F} 2.5942 - 118 NaN NaN 110213.6 NaN 13469 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16867 71.515 NaN 158400 35 0 28893 0.263 + 25604 SFYYNKSL 8 56 511.25374321645376 1020.4929334997075 2 511.254150390625 MULTI HCD FTMS 0 0 0 16858 27107.626953125 0.47118484897721513 9 -0.25461578369140625 9 Unmodified _SFYYNKSL_ REV__tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1 4.75600775471527 0.5349361699807423 1 {I|L} 1 -1 6.9897 0 0 0.68493 0 0 131.98664960002844 772.4023263941265 904.3889759941549 0 0 0 0 0 0 0 0 0 {I|L} 0.68493 + + 2 + NaN NaN 114735.7 NaN 13470 3395 16858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16869 71.52 NaN 1664200 35 0 244630 0.327 + 23651 RPVSVWDVL 9 105 535.8031112556107 1069.5916695780213 2 535.803466796875 MULTI HCD FTMS 0 0 0 16868 400909.09375 0.15605985016414328 7 -0.19324493408203125 1 Unmodified _RPVSVWDVL_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 38.61474834105838 0.07170385841135779 1 [VP]RSVWDV{I|L} 9 2 + 51.882 0 0 4.8506 4.8506 84.201 0 0 0 6.830532103693869 16.478174818886373 6.830532103693869 6.830532103693869 0 1.079689690656103 1.154901959985743 0.3494850021680094 0 [VP]RSVWDV{I|L};[RP]VSVWDV{I|L};[DV]W[VS]RPV{I|L};[DV]W[VS]PRV{I|L};[VS][RP]VWDV{I|L};[WD]V[VS]RPV{I|L};[WD]V[VS]PRV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[RD]VGPV{I|L};[PA]{M(Oxidation (M))|F}[RD]VGPV{I|L};[PA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GPV{I|L} 4.8506;4.212;3.7316;3.5669;3.2806;2.3984;2.2337;2.195;2.191;2.1127 -;+;-;-;-;-;-;-;-;- + 2999 NaN NaN 338994.7 NaN 13471 3396 16868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16870 71.525 NaN 770490 35 0 157720 0.261 + 30561 VNLFPFNVL 9 87 531.802749531888 1061.590946130576 2 532.31884765625 MULTI HCD FTMS 0 0 0 16868 32960.8046875 0.4781085681389614 1 -0.022857666015625 2 Unmodified _VNLFPFNVL_ ENST00000471743.1_1_2:26435372-26437931:-|nuORF 15.847184025352803 0.2234401846867398 1 [VP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}QK{I|L} 9 4 + 24.103 0 0 2.2704 2.2704 87.099 0 0 0 0.32485735004529914 0.32485735004529914 0.32485735004529914 24.102737437457623 0 0 1.6989700043360187 0 0 [VP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}QK{I|L} 2.2704 - 218 NaN NaN 204953.2 NaN 13472 3396 16868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16871 71.528 NaN 752220 35 0 76102 0.261 + 11533 IYSIDFTRF 9 89 581.3007795287762 1160.5870061243522 2 581.3009643554688 MULTI HCD FTMS 0 0 0 16868 268005.78125 0.20653716981979056 -5 0.1476287841796875 3 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 114.20165948288297 0.0022564706844261533 1 {I|L}YS{[HG]|PP}TSH{I|L}{M(Oxidation (M))|F} 10 6 + 77.974 0 0 6.7185 6.7185 92.137 0 0 0 44.789784572998165 8.191606806296662 8.191606806296662 18.79493455131808 0 2.0356668758921828 1.5228787452803376 0.805462187404089 0 {I|L}YS{[HG]|PP}TSH{I|L}{M(Oxidation (M))|F};{I|L}YS{[DA]|[EG]}[VP]H{I|L}{M(Oxidation (M))|F};[Y{I|L}]S{I|L}[YR]EA{M(Oxidation (M))|F};[YT]V{[HG]|PP}TSH{I|L}{M(Oxidation (M))|F};[YT]V{I|L}[YR]EA{M(Oxidation (M))|F};[YT]T[YR]{I|L}[TP]{M(Oxidation (M))|F};[YT]V{[DA]|[EG]}[VP]H{I|L}{M(Oxidation (M))|F};[YT]T[YR][TP]{I|L}{M(Oxidation (M))|F};{I|L}[EP]{[MS]|[{M(Oxidation (M))|F}A]}TSH{I|L}{M(Oxidation (M))|F};{I|L}[EP]T{[MS]|[{M(Oxidation (M))|F}A]}SH{I|L}{M(Oxidation (M))|F} 6.7185;5.0991;4.662;4.1039;3.5921;2.9375;2.4845;2.2886;2.235;1.7125 -;-;-;-;-;-;-;-;-;- 2192 + NaN NaN 198778.5 NaN 13473 3396 16868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16872 71.532 NaN 721070 35 0 100940 0.261 + 7894 FYVNVIVIF 9 83 557.320476383668 1112.626399834136 2 557.8056030273438 MULTI HCD FTMS 0 0 0 16868 21327.072265625 0.707072936813763 3 -0.07852935791015625 4 Unmodified _FYVNVIVIF_ ENSG00000169777|ENST00000382492|TAS2R1;TAS2R1|p.I62T|1|0.47|ENSG00000169777|chr5:9629848-9629848|A/G|missense_variant 19.438996006549623 0.19240772610395238 1 {I|L}Q{[QG]|[NA]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 8 6 27.706 0 0 2.4901 0 0 164.1082801022598 0 164.1082801022598 0 11.507892808049696 0 0 0 0 0 0 0.6382104921644451 {I|L}Q{[QG]|[NA]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 2.4901 - 713 + NaN NaN 193481.1 NaN 13474 3396 16868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16873 71.535 NaN 134150 35 0 23137 0.261 + 5427 FHRMALAF 8 41 496.76053439248295 NaN 0 496.77032470703125 PEAK HCD FTMS 0 0 0 16868 7668.65185546875 0.7256153019855158 -1 0.032928466796875 5 Unmodified _FHRMALAF_ REV__ENST00000456101.6_1_6:109775937-109776843:-|nuORF 2.8892196856762586 0.38822285293237185 1 V{I|L} 2 -1 9.464 0 0 0.9545 0 0 131.0753093046223 645.2590426080686 776.3343519126909 0 0 0 0 0 0 0 0 0 V{I|L} 0.9545 - 10 + NaN NaN 101571.8 NaN 13475 3396 16868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16874 71.538 NaN 205510 35 0 23694 0.261 + 10103 IFHPTQPWVF 10 69 636.3328664952884 1270.6511800573767 2 636.333740234375 MULTI HCD FTMS 0 0 0 16868 35858.76953125 0.4413269473495754 3 -0.07852935791015625 6 Unmodified _IFHPTQPWVF_ ENSG00000261236|ENST00000569669|BOP1;nc|ENSG00000261236|Q14137-2|BOP1 17.11289562659939 0.35104376501799556 1 V{M(Oxidation (M))|F} 2 8 25.217 0 0 1.9845 0 0 1006.5012410420994 0 1006.5012410420994 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 1.9845 + + 79 NaN NaN 118676.9 NaN 13476 3396 16868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16876 71.543 NaN 1341900 35 0 183840 0.327 + 6760 FPQKWPDLL 9 103 572.3135319264283 1142.6125109196564 2 572.3135986328125 MULTI HCD FTMS 0 0 0 16875 727828.5625 0.6861290683698239 4 -0.10810089111328125 1 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 106.94017166704063 0.003441928997083001 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L} 9 0 + 81.868 0 0 7.165 7.165 88.446 0 0 0 12.610578645570925 7.257272671616306 7.257272671616306 7.257272671616306 0 2.1549471895720984 1.5228787452803376 1.4489700043360187 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}DP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;{M(Oxidation (M))|F}P[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWP[{I|L}V]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}DP{I|L};{M(Oxidation (M))|F}PQKW{I|L}{I|L}[DP] 7.165;6.5299;6.3591;6.0613;5.8249;5.724;5.2555;5.0674;5.019;4.6476 +;-;-;+;-;-;-;-;-;- + 4462 NaN NaN 287611.4 NaN 13477 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16877 71.548 NaN 1212200 35 0 100300 0.261 + 19748 NYAWVYYHL 9 104 614.7929287250602 1227.5713045169202 2 614.79296875 MULTI HCD FTMS 0 0 0 16875 404869.3125 0.007215611405543678 86 -2.4205474853515625 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 131.26759243768294 0.0005280990274065272 1 [YN]AWVYYH{I|L} 9 0 + 110.15 0 0 8.9729 8.9729 96.688 0 0 0 30.789719040763046 16.478174818886373 16.478174818886373 27.50630971391878 0 2.75 1.6989700043360187 0 2.3085456211725206 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]AWVD[WK]{M(Oxidation (M))|F};[YN]V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};E[HQ]{[TV]|[{I|L}S]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VD[NP]H{I|L};[NS]{M(Oxidation (M))|F}WVYYH{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]A[VS]VYR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8.9729;6.7321;6.1305;5.5673;5.062;4.5948;4.3625;4.2847;3.9465;3.9383 +;-;-;-;-;-;-;-;-;- + 5303 NaN NaN 263913.5 NaN 13478 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16878 71.551 NaN 1873100 35 0 277020 0.261 + 23652 RPVSVWDVL 9 115 535.8031112556107 1069.5916695780213 2 535.787353515625 MULTI HCD FTMS 0 0 0 16875 378652.46875 0.14739612659985454 8 -0.22829437255859375 3 Unmodified _RPVSVWDVL_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 24.990960013464015 0.14443998892849796 1 WDV{I|L} 4 5 31.45 0 0 2.9404 0 0 538.324510642775 0 538.324510642775 0 8.948317552394283 0 0 0 0.6747425010840047 0 0 0 + WDV{I|L} 2.9404 + + 1358 NaN NaN 369707.8 NaN 13479 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16879 71.554 NaN 1111300 35 0 103050 0.261 + 13181 KYLTEGLLQF 10 90 606.3372036148426 1210.659854296485 2 606.3374633789062 MULTI HCD FTMS 0 0 0 16875 575497.75 0.11882849512259257 -5 0.14099884033203125 4 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 108.26204199777034 5.332231170430618E-05 1 [YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F} 10 2 + 99.919 0 0 8.2533 8.2533 88.235 0 0 0 7.146942222687173 82.30273313060016 7.146942222687173 2.7422750325201406 0 2.1237125054200234 0 1.7658715643802767 0.28872548999643577 [YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}[AG]{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}[AG]{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}[AG]{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}[AG]{M(Oxidation (M))|F};[YK]{I|L}TEAVQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}TAEVQ{I|L}{M(Oxidation (M))|F} 8.2533;8.0268;7.9305;7.704;7.4963;7.2698;7.1735;6.947;6.842;6.6155 -;-;+;-;-;-;-;-;-;- + 3077 NaN NaN 265337.2 NaN 13480 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16880 71.558 NaN 259930 35 0 19116 0.261 + 4834 EYYRGFTLF 9 63 598.291333426794 1194.568113920388 2 598.29296875 MULTI HCD FTMS 0 0 0 16875 154119.90625 0.5676297624151534 4 -0.10810089111328125 5 Unmodified _EYYRGFTLF_ ENSG00000179335|ENST00000395066|CLK3;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3 27.628801355627647 0.12213550946336599 1 T{I|L}{M(Oxidation (M))|F} 3 6 35.662 0 0 2.9853 0 0 815.3600941388687 0 815.3600941388687 0 16.197887582883936 0 0 0 1 0 1 0 + T{I|L}{M(Oxidation (M))|F} 2.9853 + + 92 NaN NaN 119732.2 NaN 13481 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16881 71.561 NaN 242610 35 0 58720 0.261 + 13148 KYLNWDAVF 9 56 578.2951831003296 1154.5758132674591 2 578.2958984375 MULTI HCD FTMS 0 0 0 16875 164447.921875 1 0 0 6 Unmodified _KYLNWDAVF_ ENSG00000149311|ENST00000675843|ATM 29.081581746732265 0.1154664336125038 1 WV{M(Oxidation (M))|F} 3 6 36.198 0 0 3.1352 0 0 704.3658924787125 0 704.3658924787125 0 29.286662482156345 0 0 0 1 0 0 0 WV{M(Oxidation (M))|F} 3.1352 - 135 NaN NaN 118610.5 NaN 13482 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16882 71.564 NaN 122090 35 0 10610 0.261 + 21476 PYDDLLQII 9 38 545.2956043515769 1088.5766557699537 2 545.2947387695312 MULTI HCD FTMS 0 0 0 16875 41624.31640625 0.5031555871774812 4 -0.10810089111328125 7 Unmodified _PYDDLLQII_ REV__ENSG00000089157|ENST00000392514|RPLP0;REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF;REV__ENST00000546564.5_1_12:120636605-120638589:-|nuORF;REV__ENST00000548568.5_1_12:120636605-120638589:-|nuORF;REV__ENST00000549242.1_1_12:120637045-120638589:-|nuORF;REV__nc|ENSG00000089157|P05388-2|RPLP0;REV__nc|ENSG00000213553|Q8NHW5|RPLP0P6 6.723162845929126 0.3000504726104499 1 E{I|L} 2 -1 18.188 0 0 1.6708 0 0 828.4520130841812 0 828.4520130841812 0 3.5834938564822494 0 0 0 0 0 0.5 0 E{I|L} 1.6708 - 11 NaN NaN 98286.6 NaN 13483 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16883 71.568 NaN 142300 35 0 12851 0.261 + 10006 IEQSFQAF 8 55 485.23745220857853 968.4603514839571 2 485.2380676269531 MULTI HCD FTMS 0 0 0 16875 45857.3046875 0.6762160284028162 5 -0.1475982666015625 8 Unmodified _IEQSFQAF_ REV__ENSG00000129167|ENST00000682019|TPH1;REV__ENSG00000139287|ENST00000333850|TPH2;REV__ENSG00000171759|ENST00000553106|PAH;REV__nc|ENSG00000129167|P17752-2|TPH1;REV__nc|ENSG00000139287|Q8IWU9-2|TPH2 20.453626601364224 0.4433031943603284 1 {I|L}[HS]QA{M(Oxidation (M))|F} 6 -1 42.154 0 0 4.3526 0 0 267.11897475410314 0 267.11897475410314 0 31.695925227640984 0 0 0 1.5 0 0.3252574989159953 0 {I|L}[HS]QA{M(Oxidation (M))|F} 4.3526 - 84 NaN NaN 110733.3 NaN 13484 3397 16875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16885 71.573 NaN 996110 35 0 82340 0.327 + 4715 EYQKVWNLF 9 107 613.8136951048748 1225.6128372765495 2 613.8141479492188 MULTI HCD FTMS 0 0 0 16884 387815.21875 0.027598790166477226 21 -0.5840530395507812 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 92.20098385977256 0.0044682926920227755 1 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 76.076 0 0 6.2072 6.2072 87.231 0 0 0 8.591886076360396 13.711375162600717 8.591886076360396 8.591886076360396 0 2.610924374808178 1.0457574905606752 2.6989700043360187 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YN]A{[TV]|[{I|L}S]}VWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};[YN]A{[TV]|[{I|L}S]}VWGG{I|L}{M(Oxidation (M))|F};[KA][YG]EVWN{I|L}{M(Oxidation (M))|F};[YE]QKV[RK]E{M(Oxidation (M))|F} 6.2072;5.5061;5.4558;5.4558;5.1333;4.7584;4.7081;4.3856;4.3196;3.7791 +;-;-;-;-;-;-;-;-;- + 2769 NaN NaN 235171 NaN 13485 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16886 71.577 NaN 447530 35 0 93028 0.262 + 18447 MPVLEQSVL 9 63 508.2782476532618 1014.5419423733236 2 508.2784118652344 MULTI HCD FTMS 0 0 0 16884 198587.6875 0.5060675811572427 3 -0.07860565185546875 2 Unmodified _MPVLEQSVL_ ENSG00000073614|ENST00000399788|KDM5A;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 47.594388314883695 0.03493607795751234 1 {I|L}EQSV{I|L} 6 3 64.954 0 0 6.4023 0 0 327.16209609199376 0 327.16209609199376 0 48.499934467764874 0 0 0 2.2302046884880937 0 0.8494850021680094 0 + {I|L}EQSV{I|L} 6.4023 + + 289 NaN NaN 162314.2 NaN 13486 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16887 71.581 NaN 690410 35 0 57516 0.261 + 16021 LPSAFYIKL 9 83 526.3130884458317 1050.6116239584633 2 526.3130493164062 MULTI HCD FTMS 0 0 0 16884 206045.03125 0.15499028278510452 7 -0.19879913330078125 3 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 82.5293158979368 0.005033931517079822 1 {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L} 9 0 + 74.58 0 0 7.0987 7.0987 94.987 0 0 0 43.521913375953645 7.262036441594191 7.262036441594191 56.04548165299995 0 2.024227503252014 1.6989700043360187 0.6747425010840047 0 + + {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L};[Y{M(Oxidation (M))|F}][TA][VP]{I|L}K{I|L} 7.0987;1.7641 +;- + 272 + NaN NaN 203469.5 NaN 13487 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16888 71.584 NaN 1015100 35 0 44222 0.261 + 17489 LYTEAIKFF 9 119 566.3080534574284 1130.6015539816567 2 566.3082885742188 MULTI HCD FTMS 0 0 0 16884 226481.5625 0.7721376669039308 -1 0.0294952392578125 4 Unmodified _LYTEAIKFF_ ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A 103.35351024395868 0.004027461563756449 1 [Y{I|L}]TEA{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.694 0 0 7.1373 7.1373 93.445 0 0 0 22.632192780232785 64.24053943910386 22.632192780232785 23.470325397914564 0 2.774227503252014 1.6989700043360187 1.2931576817365436 0 + + [Y{I|L}]TEA{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][DV]S{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{I|L}EA{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[Y{I|L}]A{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]A{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]P[W{I|L}][RH]{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}[HV]{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.1373;5.0614;4.8404;3.5565;3.3139;3.0616;1.3154 +;-;-;-;-;-;- + 4325 NaN NaN 248721.1 NaN 13488 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16889 71.587 NaN 259700 35 0 42713 0.261 + 32888 YAAAGSAYLL 10 54 500.2600158555183 998.5054787778366 2 500.2603759765625 MULTI HCD FTMS 0 0 0 16884 70637.71875 0.35954698556241355 3 -0.07860565185546875 5 Unmodified _YAAAGSAYLL_ REV__ENSG00000090530|ENST00000319332|P3H2 25.399314129420986 0.2735354021946395 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AE 4 -1 43.188 0 0 4.3252 0 0 0 561.3031099908811 561.3031099908811 20.981362441963327 0 0 0 0 0.8494850021680094 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AE 4.3252 - 19 + NaN NaN 124612.1 NaN 13489 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16890 71.591 NaN 551000 35 0 134240 0.261 + 1467 AYSTVPGYYSW 11 69 647.2927339697668 1292.5709150063335 2 647.2926635742188 MULTI HCD FTMS 0 0 0 16884 97049.0703125 0.23544595206639615 -4 0.10811614990234375 6 Unmodified _AYSTVPGYYSW_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 24.990960013464015 0.23933535780272686 1 QYSW 4 8 33.404 0 0 2.5843 0 0 710.3405018537125 0 710.3405018537125 0 18.404520965608278 0 0 0 0.6861818737241735 0 0 0 QYSW 2.5843 - 234 NaN NaN 165133.6 NaN 13490 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16891 71.594 NaN 430340 35 0 26832 0.261 + 11467 IYQFIMDRF 9 91 616.8103667619623 NaN 0 616.8104858398438 PEAK HCD FTMS 0 0 0 16884 61820.8125 0.537844091181678 -1 0.0294952392578125 7 Unmodified _IYQFIMDRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 49.52724829834842 0.0477210396783803 1 AQ{M(Oxidation (M))|F}{I|L}MD 6 4 43.281 0 0 3.5142 0 0 205.10820803388702 318.15671716861567 523.2649252025027 0 0 0 0 0 2.079689690656103 0 0 0 AQ{M(Oxidation (M))|F}{I|L}MD 3.5142 - 727 + NaN NaN 155003.9 NaN 13491 3398 16884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16893 71.599 NaN 1136400 35 0 168940 0.327 + 1596 AYVLNIVRF 9 87 547.8215579835019 1093.6285630338036 2 547.8218383789062 MULTI HCD FTMS 0 0 0 16892 459967.625 0.16791127491319335 6 -0.1726226806640625 1 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 120.45040980043947 0.0012363446172167195 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F} 10 2 + 104.42 0 0 9.5483 9.5483 88.816 0 0 0 23.41682737491105 79.98564426840403 23.41682737491105 0.5115252244738144 0 3.4247425010840047 1.6989700043360187 0 1.1861818737241734 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}AA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[R{I|L}]{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N[RV]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}AA{I|L}{M(Oxidation (M))|F} 9.5483;9.5015;8.4209;7.9633;7.6932;7.6256;7.2308;7.0336;6.5658;6.1187 -;+;-;-;-;-;-;-;-;- + 877 NaN NaN 250130.9 NaN 13492 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16894 71.603 NaN 616900 35 0 98368 0.261 -1 MPDLDLNL 8 70 473.73125752503404 945.4479621168681 2 473.7311706542969 MULTI HCD FTMS 0 0 0 16892 457951.40625 0.8499040450701089 -12 0.34314727783203125 2 Oxidation (M) _M(Oxidation (M))PDLDLNL_ ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}N{I|L} 8 -1 + 49.492 0 0 5.2348 5.2348 88.631 0 0 0 1.9774818288974316 30.04177620182432 1.9774818288974316 13.509562869230855 0 0.8494850021680094 0 1.086696871556164 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}GG{I|L} 5.2348;3.8059 +;- + 105 NaN NaN 178178.9 NaN 13493 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16895 71.607 NaN 653180 35 0 70199 0.261 + 24075 RYAGLYFCI 9 84 553.2785381898582 1104.5425234465163 2 553.2911376953125 MULTI HCD FTMS 0 0 0 16892 35523.265625 0.27239343027239593 -7 0.1966705322265625 3 Unmodified _RYAGLYFCI_ ENSG00000042753|ENST00000263270|AP2S1 15.847184025352803 0.2234401846867398 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TK{I|L}{M(Oxidation (M))|F}VGV 9 7 48.855 0 0 4.4231 0 0 0 62.96807578374084 62.96807578374084 -5.747490543075173 0 -5.747490543075173 0 0 0 2 1.079689690656103 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TK{I|L}{M(Oxidation (M))|F}VGV 4.4231 - 1592 NaN NaN 179394 NaN 13494 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16896 71.61 NaN 695720 35 0 60953 0.261 + 34322 YPDYYKIIL 9 93 594.3213001359899 1186.6280473387797 2 594.3215942382812 MULTI HCD FTMS 0 0 0 16892 246975.0625 0.6133226446311777 -2 0.05567169189453125 4 Unmodified _YPDYYKIIL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant 59.368380827593164 0.01846506874148156 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DYYK{I|L}{I|L}{I|L} 9 0 + 94.887 0 0 7.9964 7.9964 94.209 0 0 0 17.92719286378599 14.973024840566467 14.973024840566467 17.92719286378599 0 2.1237125054200234 1.5228787452803376 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DYYK{I|L}{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PYYK{I|L}{I|L}{I|L};YPDYYK{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DY[K{I|L}]Y{I|L}{I|L};[DP]YYYK{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DY[K{I|L}]{I|L}Y{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PY[K{I|L}]Y{I|L}{I|L};[DP]YY[K{I|L}]Y{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PY[K{I|L}]{I|L}Y{I|L};{I|L}{I|L}KYYDPY{I|L} 7.9964;6.4856;5.8755;5.7864;5.766;4.6002;4.2756;3.556;3.0894;2.6783 +;-;+;-;-;-;-;-;-;- + 1022 NaN NaN 193007.3 NaN 13495 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16897 71.613 NaN 763970 35 0 154070 0.262 + 3140 EARDRNLQ 8 86 501.2605382704691 1000.5065236077382 2 502.27789306640625 MULTI HCD FTMS 0 0 0 16892 9791.1416015625 0.220472288401662 1 -0.03281402587890625 5 Unmodified _EARDRNLQ_ ENSG00000099203|ENST00000214869|TMED1 11.640296217721598 0.50814828952472 1 EAQ 3 5 26.44 0 0 2.6427 0 0 0 669.3256879115639 669.3256879115639 6.149706487232081 0 0 0 0 0 0 0 0.3252574989159953 EAQ 2.6427 - 484 + NaN NaN 194248.6 NaN 13496 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16898 71.617 NaN 658960 35 0 52561 0.261 + 6445 FPIEAGDMF 9 73 521.7312459008294 1041.4479388684588 2 521.7312622070312 MULTI HCD FTMS 0 0 0 16892 156330.40625 0.7086212485674621 6 -0.1726226806640625 6 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 71.13359017698441 0.008721403657255008 1 {I|L}{I|L}MEAGD{M(Oxidation (M))|F}T 9 4 64.91 0 0 6.2326 0 0 0 60.9838580273636 60.9838580273636 47.86536418661561 0 0 0 0 2.06295299324845 1.2218487496163564 0.8494850021680094 0 {I|L}{I|L}MEAGD{M(Oxidation (M))|F}T 6.2326 - 605 NaN NaN 185379.5 NaN 13497 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16899 71.62 NaN 343160 35 0 13581 0.261 + 4502 EYISIALRI 9 79 539.3187701384826 1076.622987343765 2 539.3192138671875 MULTI HCD FTMS 0 0 0 16892 41274.6015625 0.05603657117362366 28 -0.801666259765625 7 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 20.41453444215458 0.18397929046831515 1 [YE]{I|L}{[TV]|[{I|L}S]}A{I|L}R{I|L} 9 0 + 19.7 0 0 1.8298 1.8298 86.525 0 0 0 5.096362191303715 2.6052176207992552 2.6052176207992552 19.70045596106559 0 0.6109243748081782 0 0 0 + + [YE]{I|L}{[TV]|[{I|L}S]}A{I|L}R{I|L} 1.8298 + + 329 + NaN NaN 133257.4 NaN 13498 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16900 71.623 NaN 154120 35 0 9918.6 0.261 + 10007 IEQSFQAF 8 56 485.23745220857853 968.4603514839571 2 485.2373352050781 MULTI HCD FTMS 0 0 0 16892 39472.84375 0.5820701807986068 7 -0.19878387451171875 8 Unmodified _IEQSFQAF_ REV__ENSG00000129167|ENST00000682019|TPH1;REV__ENSG00000139287|ENST00000333850|TPH2;REV__ENSG00000171759|ENST00000553106|PAH;REV__nc|ENSG00000129167|P17752-2|TPH1;REV__nc|ENSG00000139287|Q8IWU9-2|TPH2 20.453626601364224 0.4433031943603284 1 {I|L}[HS]QA{M(Oxidation (M))|F} 6 -1 43.901 0 0 4.5331 0 0 267.119432517775 0 267.119432517775 0 37.730012720637376 0 0 0 1.3494850021680094 0 0.3494850021680094 0 {I|L}[HS]QA{M(Oxidation (M))|F} 4.5331 - 118 NaN NaN 101398 NaN 13499 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16901 71.627 NaN 120950 35 0 10245 0.261 + 23947 RVAAAARQ 8 68 421.75136438601817 NaN 0 421.75146484375 PEAK HCD FTMS 0 0 0 16892 103369.5234375 1 0 0 9 Unmodified _RVAAAARQ_ ENST00000282388.3_2_2:43451527-43452328:-|nuORF;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.79|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant;ZFP36L2|p.H133Qfs*341|1|0.44|ENSG00000152518|chr2:43225405-43225406|-/T|frameshift_variant;ZFP36L2|p.R130Sfs*344|1|0.41|ENSG00000152518|chr2:43225416-43225417|-/A|frameshift_variant;ZFP36L2|p.R160Pfs*314|1|0.33|ENSG00000152518|chr2:43225325-43225326|-/G|frameshift_variant;ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant 5.230669730166228 0.38822285293237185 1 K 1 8 5.4846 0 0 0.65177 0 0 215.1167291609051 495.2443026178344 710.3610317787395 0 0 0 0 0 0 0 0 0 K 0.65177 - 6 + NaN NaN 101728.9 NaN 13500 3399 16892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16903 71.632 NaN 1771700 35 0 177380 0.327 + 12952 KYIDYIFNV 9 109 587.8104035990881 1173.606254264976 2 587.8109741210938 MULTI HCD FTMS 0 0 0 16902 1354753.625 0.688003543227811 3 -0.08190155029296875 1 Unmodified _KYIDYIFNV_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 103.82355648334675 0.003950725192926219 1 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV 9 2 + 83.841 0 0 7.1439 7.1439 87.389 0 0 0 7.246936120072874 4.771212547196626 4.771212547196626 4.771212547196626 0 2.305462187404089 1.2218487496163564 0.5994850021680094 0 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}VN;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}NV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}VN;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}VN;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}GGV;[YK]{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}{M(Oxidation (M))|F}NV 7.1439;6.7373;6.5264;6.3593;6.3065;5.9734;5.8999;5.5953;5.5219;4.2698 -;-;+;-;-;-;-;-;-;- + 8679 NaN NaN 355312.1 NaN 13501 3400 16902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16904 71.636 NaN 401750 35 0 81125 0.262 + 870 AYAENIALL 9 59 489.268805616118 976.523058299036 2 489.2688293457031 MULTI HCD FTMS 0 0 0 16902 366626.1875 0.25109181352593746 5 -0.13980865478515625 2 Unmodified _AYAENIALL_ ENSG00000196455|ENST00000356763|PIK3R4 88.95385435242217 0.004553379958619559 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L} 9 0 + 90.358 0 0 9.2531 9.2531 96.499 0 0 0 17.772336398234003 50.565243062074 17.772336398234003 21.95046257204389 0 2.2302046884880937 1.3010299956639813 0.3252574989159953 1.274227503252014 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEGG{I|L}A{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}N{I|L}A{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}GG{I|L}A{I|L}{I|L} 9.2531;7.0053;6.4076;4.1598 +;-;-;- + 147 NaN NaN 140752.2 NaN 13502 3400 16902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16905 71.64 NaN 313640 35 0 34914 0.261 + 21655 PYRTSKREL 9 73 575.3204667053424 NaN 0 575.330810546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PYRTSKREL_ ENST00000476950.5_2_21:38600601-38604703:-|nuORF 16.149105407346934 0.21324626030841579 1 {I|L}N{I|L}EE{I|L}T 7 8 18.83 0 0 1.6394 0 0 132.09241572833338 201.06670557193596 333.15912130026936 0 0 0 0 0 0 0 0.25 0 {I|L}N{I|L}EE{I|L}T 1.6394 - 224 + NaN NaN 138194 NaN 13503 3400 16902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16906 71.643 NaN 99171 35 0 24892 0.264 + 12825 KYEREMDEL 9 36 404.85842681724176 NaN 0 404.8587646484375 PEAK HCD FTMS 0 0 0 16902 7426.43212890625 0.2671627915179524 1 -0.01961517333984375 4 Unmodified _KYEREMDEL_ REV__tr|U7T386|U7T386_FUSNUCelldivisionproteinFtsAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsAPE=3SV=1 3.5964929083625545 0.27781873954207675 1 {I|L} 1 -1 6.9897 0 0 0.86538 0 0 421.4708991893679 270.1246431940063 691.5955423833742 0 0 0 0 0 0 0 0 0 {I|L} 0.86538 + + 1 + NaN NaN 89835.9 NaN 13504 3400 16902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16907 71.646 NaN 282020 35 0 40829 0.261 + 10742 IRKELKRKKKW 11 58 504.9994830023437 NaN 0 504.74871826171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IRKELKRKKKW_ ENSG00000150337|ENST00000369168|FCGR1A;nc|ENSG00000150337|P12314-2|FCGR1A;nc|ENSG00000291135|Q92637-3|FCGR1BP;nc|ENSG00000291135|Q92637|FCGR1BP 0 0.34212014346876374 1 Y 1 11 3.9794 0 0 0.39479 0 0 522.7574060908219 319.1406683484226 841.8980744392445 0 0 0 0 0 0 0 0 0 Y 0.39479 - 17 + NaN NaN 123329.5 NaN 13505 3400 16902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16909 71.651 NaN 2335400 35 0 432950 0.327 + 25872 SMTRYFYLF 9 108 622.2945812592782 1242.5746095853563 2 622.2945556640625 MULTI HCD FTMS 0 0 0 16908 1575143.125 0.9049963034978377 1 -0.03949737548828125 1 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 63.960520009940105 0.0120409805053046 1 SY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 6 3 68.805 0 0 5.5373 0 0 404.18541152168126 0 404.18541152168126 0 28.74552818783222 0 0 0 1.610924374808178 0 1.1549471895720984 0 SY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5.5373 - 5694 NaN NaN 438039 NaN 13506 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16910 71.656 NaN 1777200 35 0 266440 0.263 + 18116 MPDFDLHL 8 84 494.23385529338344 986.4531576535669 2 494.2339172363281 MULTI HCD FTMS 0 0 0 16908 1060972.75 0.7698592367658225 -4 0.10810089111328125 2 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 129.2004930540761 0.03681736901630326 1 MPD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 83.894 0 0 8.5046 8.5046 95.89 0 0 0 34.39200851222832 8.979400086720375 8.979400086720375 25.80600053269835 0 2.004432191740108 1.5228787452803376 0.6505149978319906 0 + + MPD{M(Oxidation (M))|F}D{I|L}H{I|L};[DP]{M(Oxidation (M))|F}DM{I|L}H{I|L};MPTK[NS]Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PDM{I|L}H{I|L};[DP]{M(Oxidation (M))|F}D{I|L}MH{I|L};MPTK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN];[DP]{M(Oxidation (M))|F}D{I|L}HM{I|L};[DP]{M(Oxidation (M))|F}VEMH{I|L};{[{M(Oxidation (M))|F}D]|MM}PD{I|L}MH{I|L};[H{I|L}]D{[{M(Oxidation (M))|F}D]|MM}PM{I|L} 8.5046;5.8885;5.056;4.8748;4.3854;4.1904;3.8036;3.6768;3.3717;3.2558 +;-;-;-;-;-;-;-;-;- + 856 + NaN NaN 351184.7 NaN 13507 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16911 71.659 NaN 542360 35 0 60999 0.261 + 26747 SYEYRFLEF 9 80 627.2956702732074 1252.5767876132147 2 627.2953491210938 MULTI HCD FTMS 0 0 0 16908 182719.71875 0.21858167673948894 -4 0.10810089111328125 3 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 69.33821966488729 0.009302356455414924 1 {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 9 0 + 70.416 0 0 5.6217 5.6217 91.057 0 0 0 4.762036441594191 49.95403695874927 4.762036441594191 27.37334396171555 0 2.2302046884880937 0 0.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYRE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][HT][PS]{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[YR]ESY{M(Oxidation (M))|F};{[ET]|[MV]}{[{M(Oxidation (M))|F}H]|[RQ]}[PS]{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[YR]{[{M(Oxidation (M))|F}C]|[YS]}E{M(Oxidation (M))|F} 5.6217;3.4363;3.2736;2.8066;2.7929;2.0093 +;-;-;-;-;- + 599 NaN NaN 183802.9 NaN 13508 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16912 71.663 NaN 953800 35 0 223860 0.261 -1 RHFGMALGALF 11 75 618.3213634677372 1234.6281740022744 2 618.3214721679688 MULTI HCD FTMS 0 0 0 16908 271652.78125 0.046399201947021414 -6 0.16388702392578125 4 Oxidation (M) _RHFGM(Oxidation (M))ALGALF_ ENSG00000171551|ENST00000304546|ECEL1;nc|ENSG00000171551|O95672-2|ECEL1 8.745405648335112 0.3805662881914433 1 YYPEYK{I|L}{I|L}C 9 -1 52.233 0 0 4.2306 0 0 0 59.024353211195745 59.024353211195745 44.785240617616964 0 0 0 0 2.0682503180159344 2 0 0 YYPEYK{I|L}{I|L}C 4.2306 - 298 NaN NaN 227562.8 NaN 13509 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16913 71.666 NaN 410660 35 0 32410 0.262 + -1 ESLLMEPLL 9 67 530.7835891813753 1059.5526254295505 2 530.765380859375 MULTI HCD FTMS 0 0 0 16908 23244.73828125 0.36073549229535357 -6 0.16388702392578125 5 Oxidation (M) _ESLLM(Oxidation (M))EPLL_ REV__ENSG00000172465|ENST00000372625|TCEAL1 25.399314129420986 0.14091189997036632 1 [YT]D{I|L}PEP{I|L} 8 -1 55.716 0 0 5.2585 0 0 0 128.0694685917538 128.0694685917538 32.05182101459236 0 0 0 0 1.1549471895720984 1.0457574905606752 0.6989700043360187 0 [YT]D{I|L}PEP{I|L} 5.2585 - 291 NaN NaN 148345.4 NaN 13510 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16914 71.669 NaN 201440 35 0 59302 0.261 -1 VDPDNVTFCVL 11 47 639.8052595502007 1277.5959661672014 2 639.80517578125 MULTI HCD FTMS 0 0 0 16908 95120.4140625 0.47567799297966074 8 -0.2247314453125 6 Carbamidomethyl (C) _VDPDNVTFC(Carbamidomethyl (C))VL_ ENSG00000130222|ENST00000252506|GADD45G 4.5288652416199255 0.3990586020344083 1 V{I|L} 2 -1 25.969 0 0 2.0327 0 0 1047.4338347436326 0 1047.4338347436326 0 24.186363512511498 0 0 0 0.5 0 0 0 V{I|L} 2.0327 + + 5 NaN NaN 117407.2 NaN 13511 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16915 71.673 NaN 322060 35 0 20996 0.261 + 34454 YPEVEIFRTL 10 78 633.8398291751703 1265.6651054171405 2 633.8395385742188 MULTI HCD FTMS 0 0 0 16908 81757.1875 0.3055761221197223 -5 0.13095855712890625 7 Unmodified _YPEVEIFRTL_ ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant 64.69154705217129 0.02435962300912059 1 YPEVE{I|L}{M(Oxidation (M))|F}RT{I|L} 10 0 + 99.87 0 0 7.8907 7.8907 95.916 0 0 0 85 6.27513725768253 6.27513725768253 46.589383230413866 0 2.6989700043360187 1.5228787452803376 0.3494850021680094 0 + + YPEVE{I|L}{M(Oxidation (M))|F}RT{I|L};YPEV{I|L}{I|L}P{[HG]|PP}E{I|L} 7.8907;4.2097 +;- + 312 + NaN NaN 130917.1 NaN 13512 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16916 71.676 NaN 330930 35 0 45642 0.263 -1 LPMPTEPLL 9 59 513.7805877214055 1025.5466225096109 2 513.7808227539062 MULTI HCD FTMS 0 0 0 16908 105928.59375 0.9755419839573166 -1 0.01961517333984375 8 Oxidation (M) _LPM(Oxidation (M))PTEPLL_ ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 32.30548876998284 0.10066689432505688 1 EP{I|L}{I|L} 4 -1 40.675 0 0 3.9662 0 0 555.2723866193375 0 555.2723866193375 0 23.68562527100117 0 0 0 0.8252574989159953 0 0.3494850021680094 0 EP{I|L}{I|L} 3.9662 + + 35 NaN NaN 129441.3 NaN 13513 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16917 71.679 NaN 359480 35 0 40425 0.261 + 21011 PLPEGWEI 8 51 470.74243466578787 939.4703163983758 2 470.7424621582031 MULTI HCD FTMS 0 0 0 16908 64550.453125 0.14569757160192565 -12 0.339874267578125 9 Unmodified _PLPEGWEI_ ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-3|WWP1;nc|ENSG00000123124|Q9H0M0-6|WWP1;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 16.942295170755138 0.46913822049235215 1 WE{I|L} 3 5 28.672 0 0 3.0519 0 0 493.25356989366605 0 493.25356989366605 0 21.22486274231747 0 0 0 0.8494850021680094 0 0 0 + WE{I|L} 3.0519 + + 39 NaN NaN 135934.4 NaN 13514 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16918 71.683 NaN 306060 35 0 53375 0.261 -1 0 66 408.5640241148902 1222.6702429448706 3 408.5639343261719 MULTI HCD FTMS 0 0 0 16908 61212.8828125 0.020633428494262113 22 -0.62445068359375 10 NaN NaN 1 WGD{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 8 -1 46.648 0 0 3.8153 0 0 288.1821766584 0 288.1821766584 0 42.668884535972325 0 0 0 1.4247425010840047 0 0.3807196863200844 0 WGD{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 3.8153 - 149 NaN NaN 127042.3 NaN 13515 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16919 71.686 NaN 266800 35 0 42811 0.261 + 7643 FYIPPLATHTI 11 65 636.8528731479453 1271.6911933626905 2 636.8521118164062 MULTI HCD FTMS 0 0 0 16908 22195.6640625 0.3196408603232068 -3 0.07860565185546875 11 Unmodified _FYIPPLATHTI_ ENSG00000117335|ENST00000367042|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529|CD46 27.628801355627647 0.21662447369784368 1 P{I|L}[YE] 4 9 20.802 0 0 1.6358 0 0 751.4201527326187 0 751.4201527326187 0 12.843181179205061 0 0 0 1 0 0 0 P{I|L}[YE] 1.6358 - 19 NaN NaN 146036.9 NaN 13516 3401 16908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16921 71.691 NaN 1927900 35 0 314030 0.327 + 11534 IYSIDFTRF 9 112 581.3007795287762 1160.5870061243522 2 581.3009033203125 MULTI HCD FTMS 0 0 0 16920 1053587.25 0.811941174396648 1 -0.02278900146484375 1 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 137.42381684818497 0.00015474832393368816 1 {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F} 9 0 + 109.95 0 0 9.4737 9.4737 96.572 0 0 0 65.5202206521676 16.478174818886373 16.478174818886373 21.096430031741605 0 2.6237125054200234 1.6989700043360187 1.524227503252014 0.28872548999643577 + + {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};{I|L}YS{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F};[YT]V{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};[YT]V{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F};[Y{I|L}]S{[{M(Oxidation (M))|F}C]|[YS]}[RP]Y{I|L};[YT]V{[{M(Oxidation (M))|F}C]|[YS]}[RP]Y{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DH[EP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V[RV]DY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[{M(Oxidation (M))|F}C]|[YS]}[RP]Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V[RV]D{I|L}Y{M(Oxidation (M))|F} 9.4737;7.6559;6.3479;4.5301;4.2873;2.847;2.1996;2.1822;1.7221;1.696 +;-;-;-;-;-;-;-;-;- + 5960 + NaN NaN 373079.6 NaN 13517 3402 16920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16922 71.695 NaN 1222600 35 0 100020 0.261 + 6761 FPQKWPDLL 9 107 572.3135319264283 1142.6125109196564 2 572.31396484375 MULTI HCD FTMS 0 0 0 16920 334834.625 0.3156509391718319 9 -0.24726104736328125 2 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 63.960520009940105 0.0120409805053046 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L} 9 0 + 49.258 0 0 4.311 4.311 82.945 0 0 0 2.8434734732668616 4.648867983026513 2.8434734732668616 5.898255349109512 0 1.6549471895720984 1.2218487496163564 1.0189301784845295 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWP[{I|L}V]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;P{M(Oxidation (M))|F}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWP[{I|L}V]E;{M(Oxidation (M))|F}PQKW{I|L}V[EP];P{M(Oxidation (M))|F}QKW{I|L}VPE 4.311;3.7948;3.6295;3.5051;3.3629;2.9889;2.9454;2.8236;2.1538;2.1079 +;-;-;-;+;-;-;-;-;- + 2338 NaN NaN 255619.6 NaN 13518 3402 16920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16923 71.699 NaN 526550 35 0 71011 0.261 + 7895 FYVNVIVIF 9 78 557.320476383668 1112.626399834136 2 557.8057250976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FYVNVIVIF_ ENSG00000169777|ENST00000382492|TAS2R1;TAS2R1|p.I62T|1|0.47|ENSG00000169777|chr5:9629848-9629848|A/G|missense_variant 19.438996006549623 0.19240772610395238 1 {M(Oxidation (M))|F}P{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 8 6 33.11 0 0 2.9759 0 0 130.13077138369766 0 130.13077138369766 0 20.63608784304506 0 0 0 0 0 0.25 0 {M(Oxidation (M))|F}P{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 2.9759 - 537 + NaN NaN 162271.5 NaN 13519 3402 16920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16924 71.702 NaN 402870 35 0 30019 0.261 -1 MPVDDVIGTL 10 76 538.2702390301394 1074.5259251270786 2 538.2704467773438 MULTI HCD FTMS 0 0 0 16920 120792.5703125 1 0 0 4 Oxidation (M) _M(Oxidation (M))PVDDVIGTL_ ENSG00000140157|ENST00000337451|NIPA2;nc|ENSG00000140157|Q8N8Q9-2|NIPA2 29.081581746732265 0.240155558137004 1 {I|L}GT{I|L} 4 -1 37.18 0 0 3.4602 0 0 672.2795272466818 0 672.2795272466818 0 21.695925227640984 0 0 0 0.8252574989159953 0 0 0 {I|L}GT{I|L} 3.4602 + + 114 NaN NaN 146883.3 NaN 13520 3402 16920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16925 71.705 NaN 124780 35 0 13633 0.261 + -1 DFPHLKELGM 10 48 601.7954760599243 NaN 0 601.8096923828125 PEAK HCD FTMS 0 0 0 16920 19060.0703125 1 0 0 5 Oxidation (M) _DFPHLKELGM(Oxidation (M))_ REV__ENSG00000163517|ENST00000295757|HDAC11;REV__ENST00000475818.5_1_3:13522761-13543460:+|nuORF;REV__nc|ENSG00000163517|Q96DB2-2|HDAC11 8.155526934196011 0.33320428830121973 1 P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G 4 -1 10.49 0 0 0.87299 0 0 165.05114892070634 645.3369845025999 810.3881334233063 0 0 0 0 0 0 0 0.7302046884880937 0 P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G 0.87299 - 25 + NaN NaN 99773.4 NaN 13521 3402 16920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16926 71.709 NaN 326990 35 0 17364 0.261 + 3875 EPNKYLCNFI 10 98 620.8043883709606 1239.5942238087212 2 621.3060913085938 MULTI HCD FTMS 0 0 0 16920 70498.0234375 0.07139243229127208 25 -0.7097396850585938 6 Unmodified _EPNKYLCNFI_ REV__ENSG00000152463|ENST00000378228|OLAH;REV__nc|ENSG00000152463|Q9NV23-2|OLAH 32.78568957990786 0.20801173326193015 1 [YN]A{M(Oxidation (M))|F}VVDHY{I|L} 10 -1 + 45.275 0 0 3.6524 3.6524 83.487 0 0 0 1.0101842930570726 6.241232429092797 1.0101842930570726 9.06917008076266 0 0.718765315847925 1.0969100130080565 0.4247425010840047 0.6549471895720985 [YN]A{M(Oxidation (M))|F}VVDHY{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]{[CA]|SS}{M(Oxidation (M))|F}NMT{I|L};[YN]A{M(Oxidation (M))|F}V[PA]NMT{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[HM]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]{[CA]|SS}{M(Oxidation (M))|F}MNT{I|L};[YN]A{M(Oxidation (M))|F}V[PA]MNT{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PY{I|L};[YN]A{M(Oxidation (M))|F}VVW[DN]{I|L};[YN]A{M(Oxidation (M))|F}V[PA]MA[SG]{I|L};[YN]A{M(Oxidation (M))|F}VV{[CP]|[EA]}NT{I|L} 3.6524;2.9208;2.911;2.8827;2.6964;2.6866;2.678;2.3805;2.3351;2.3017 -;-;-;-;-;-;-;-;-;- 3974 NaN NaN 137100 NaN 13522 3402 16920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16928 71.714 NaN 10176000 35 0 1899500 0.327 + 6139 FPEHIFPAL 9 108 535.7874980933541 1069.560443253508 2 535.7875366210938 MULTI HCD FTMS 0 0 0 16927 6783110 0.46913127536763927 -8 0.22617340087890625 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 131.29775728308752 0.0005262696486345744 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 96.539 0 0 9.026 9.026 91.73 0 0 0 15.45371572735597 16.478174818886373 15.45371572735597 8.05462187404089 0 2.4049471895720984 1.3979400086720375 0.9916440611282626 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[YC]|[HE]}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{M(Oxidation (M))|F}{I|L}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}{I|L}AP;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L} 9.026;8.273;8.1828;7.8758;7.5812;7.4125;7.2973;7.2479;7.1697;7.1483 +;-;-;-;-;-;-;-;-;- + 5823 NaN NaN 846651.8 NaN 13523 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16929 71.718 NaN 6481800 35 0 610630 0.192 + 13182 KYLTEGLLQF 10 108 606.3372036148426 1210.659854296485 2 606.337646484375 MULTI HCD FTMS 0 0 0 16927 4414922 0.9115909442628171 1 -0.0284423828125 2 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 185.27212559001313 2.889465977405496E-16 1 [Y{I|L}]KTAEV{I|L}Q{M(Oxidation (M))|F} 10 5 + 110.07 0 0 9.092 9.092 88.676 0 0 0 1.073969527010405 10.014986047507577 1.073969527010405 1.073969527010405 0 1.774227503252014 0.8860566476931632 2.0119229975844686 0.9194451763165201 [Y{I|L}]KTAEV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAD{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEG{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAEV{I|L}[AG]{M(Oxidation (M))|F};KY{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F} 9.092;9.0033;8.9007;8.8491;8.812;8.7604;8.6579;8.5692;8.335;8.2648 -;-;-;-;-;-;-;+;-;+ + 17747 NaN NaN 620424.3 NaN 13524 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16930 71.72 NaN 1193400 35 0 103000 0.261 + 19749 NYAWVYYHL 9 99 614.7929287250602 1227.5713045169202 2 614.7928466796875 MULTI HCD FTMS 0 0 0 16927 408259.78125 0.007276036595172342 92 -2.5660629272460938 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 131.26759243768294 0.0005280990274065272 1 [YN]AWVYYH{I|L} 9 0 + 109.11 0 0 8.888 8.888 95.514 0 0 0 30.78181083182585 16.478174818886373 16.478174818886373 17.258177263343413 0 2.7302046884880937 1.6989700043360187 0 2.321051375499123 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]WAVW[YN]{I|L};{[WN]|[YH]}YAVYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VD[NP]H{I|L};[YN]ADAV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[NS]{M(Oxidation (M))|F}WVYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W[YG]YYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VDA[YN]{I|L} 8.888;7.4821;6.6925;5.2866;4.645;4.2548;4.2384;4.0987;4.0049;3.3831 +;-;-;-;-;-;-;-;-;- + 1960 NaN NaN 260130.9 NaN 13525 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16931 71.724 NaN 1203200 35 0 128680 0.261 + 19371 NPDWGTFEEV 10 112 597.2589991235423 1192.5034453138844 2 596.7710571289062 MULTI HCD FTMS 0 0 0 16927 48793.9921875 1 0 0 4 Unmodified _NPDWGTFEEV_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 27.223235318498237 0.2564750587861972 1 DAAD{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 9 9 50.679 0 0 4.2498 0 0 166.05505085797705 0 166.05505085797705 0 6.049282489045943 0 0 0 0.13821049216444517 0 1.6329131673969606 1.0114393726401687 DAAD{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 4.2498 - 8340 + NaN NaN 270817.5 NaN 13526 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16932 71.727 NaN 529810 35 0 43074 0.261 + 11622 IYTVLFERL 9 88 577.3344059979004 1152.6542590626007 2 577.3343505859375 MULTI HCD FTMS 0 0 0 16927 211587.328125 0.8676119879399427 -2 0.062286376953125 5 Unmodified _IYTVLFERL_ ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF;nc|ENSG00000108528|Q02978-2|SLC25A11 100.0907132914201 0.004261551473353346 1 [Y{I|L}]TV{I|L}{M(Oxidation (M))|F}ER{I|L} 9 0 + 98.943 0 0 8.5839 8.5839 93.321 0 0 0 24.13734275855269 92.74526605889172 24.13734275855269 9.815534464597704 0 2.805462187404089 1.6989700043360187 2.0356668758921828 0 + + [Y{I|L}]TV{I|L}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]TV{I|L}E{M(Oxidation (M))|F}R{I|L} 8.5839;7.7324 +;- + 882 NaN NaN 159567.3 NaN 13527 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16933 71.73 NaN 442150 35 0 66375 0.261 + 16022 LPSAFYIKL 9 65 526.3130884458317 1050.6116239584633 2 526.3134765625 MULTI HCD FTMS 0 0 0 16927 82860.6171875 0.06232904725596928 12 -0.31537628173828125 6 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 43.77239144664712 0.04802738721622131 1 {I|L}PSA[Y{M(Oxidation (M))|F}]{I|L}K{I|L} 9 0 + 48.663 0 0 4.6319 4.6319 90.385 0 0 0 15.064827361114062 4.65543355115917 4.65543355115917 48.663326359208874 0 1.3684151806525389 1.3979400086720375 0.6139829889124311 0 + + {I|L}PSA[Y{M(Oxidation (M))|F}]{I|L}K{I|L} 4.6319 + + 105 + NaN NaN 144570.5 NaN 13528 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16934 71.734 NaN 164370 35 0 15439 0.261 + 18963 NAILVDTPL 9 41 478.27670330188704 954.5388536705741 2 478.2765197753906 MULTI HCD FTMS 0 0 0 16927 85803.6796875 1 0 0 7 Unmodified _NAILVDTPL_ ENSG00000159720|ENST00000290949|ATP6V0D1 45.69961567697781 0.039180348357221985 1 {I|L}VDT[{I|L}P] 6 3 50.252 0 0 5.2646 0 0 298.16398902389284 0 298.16398902389284 0 37.06485629844558 0 0 0 2.25 0 0.6861818737241735 0 + {I|L}VDT[{I|L}P] 5.2646 + + 40 + NaN NaN 106190.8 NaN 13529 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16935 71.737 NaN 315900 35 0 50674 0.261 + -1 GQLLYEMM 8 69 508.72514305118113 NaN 0 508.7249450683594 PEAK HCD FTMS 0 0 0 16927 33073.98046875 0.5299751059504045 -7 0.19324493408203125 8 2 Oxidation (M) _GQLLYEM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000130772|ENST00000373842|MED18;REV__ENST00000475655.1_1_1:28655643-28657251:+|nuORF 12.531546534597751 0.38822285293237185 1 A{I|L} 2 -1 14.196 0 0 1.398 0 0 312.08259703810603 516.2109366007397 828.2935336388457 0 0 0 0 0 0.9247425010840047 0 0 0 A{I|L} 1.398 - 25 + NaN NaN 131804.6 NaN 13530 3403 16927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16937 71.742 NaN 2147900 35 0 224390 0.327 + 6762 FPQKWPDLL 9 117 572.3135319264283 1142.6125109196564 2 572.3262329101562 MULTI HCD FTMS 0 0 0 16936 209988.671875 0.1979577873488723 11 -0.28693389892578125 1 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 41.8396318013385 0.056899836730939755 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 8 6 57.753 0 0 5.0545 0 0 0 128.04664152678586 128.04664152678586 -4.716969934267773 0 -4.716969934267773 0 0 0 2 1.1914339689053026 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 5.0545 - 3525 NaN NaN 421663.8 NaN 13531 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16938 71.746 NaN 714190 35 0 121130 0.262 -1 MPDLDLNL 8 67 473.73125752503404 945.4479621168681 2 473.7311096191406 MULTI HCD FTMS 0 0 0 16936 436044.59375 0.8092475729985321 -7 0.19882965087890625 2 Oxidation (M) _M(Oxidation (M))PDLDLNL_ ENSG00000124942|ENST00000378024|AHNAK 67.34385681178166 0.03276080048072826 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L} 8 -1 + 56.59 0 0 5.9855 5.9855 88.679 0 0 0 10.082085924241596 16.40978057358332 10.082085924241596 9.262137858390815 0 0.4247425010840047 0 0.9802046884880937 0.7134679910804405 {NN|[MP]|[D{I|L}]|[EV]}{I|L}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GG{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}GG{I|L} 5.9855;5.0059;4.9192;3.4903 -;-;+;- + 98 NaN NaN 204918.4 NaN 13532 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16939 71.75 NaN 815320 35 0 211540 0.261 + 1468 AYSTVPGYYSW 11 83 647.2927339697668 1292.5709150063335 2 647.29248046875 MULTI HCD FTMS 0 0 0 16936 133949.78125 0.32496894276203736 2 -0.05562591552734375 3 Unmodified _AYSTVPGYYSW_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 40.23920728925047 0.13540949088500095 1 VP[YG]YSW 7 4 41.629 0 0 3.2207 0 0 422.1789723126969 0 422.1789723126969 0 29.18916321785865 0 0 0 1.7059771852360797 0 0 0 + VP[YG]YSW 3.2207 + + 1018 NaN NaN 204375.4 NaN 13533 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16940 71.753 NaN 1355900 35 0 117560 0.262 + 20716 PFVDHVFTF 9 105 554.7767785582037 1107.5390041832072 2 554.7764892578125 MULTI HCD FTMS 0 0 0 16936 511103.9375 0.18625734491854082 -6 0.16933441162109375 4 Unmodified _PFVDHVFTF_ ENSG00000113460|ENST00000336767|BRIX1 234.6835571636531 7.149366722189799E-32 1 P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 116.97 0 0 10.561 10.561 91.392 0 0 0 64.00662344279569 16.478174818886373 16.478174818886373 4.688105454342804 0 3.2302046884880937 0 2.635151878060192 0 + + P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}PVDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHVT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDH{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]PDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};P{[QS]|[NT]}PWV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDH{M(Oxidation (M))|F}TV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHTV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHT{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10.561;10.138;9.8963;8.6255;8.6076;7.6283;7.2044;7.065;6.9775;6.7057 +;-;+;-;-;-;-;-;-;- + 6112 + NaN NaN 288832.6 NaN 13534 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16941 71.757 NaN 1006300 35 0 169160 0.261 + 20297 NYPETLGRLLI 11 99 644.8667645071672 1287.7189760811343 2 644.8668823242188 MULTI HCD FTMS 0 0 0 16936 210953.78125 0.5007472426719443 -3 0.090728759765625 5 Unmodified _NYPETLGRLLI_ ENSG00000103184|ENST00000251170|SEC14L5;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 66.68293810318366 0.018539700951393005 1 [YN]PET{I|L}GR{I|L}{I|L}{I|L} 11 0 + 70.577 0 0 5.4808 5.4808 89.426 0 0 0 39.33494268640206 9.229404389495912 9.229404389495912 15.664030262951655 0 2.579689690656103 2 0 0 + + [YN]PET{I|L}GR{I|L}{I|L}{I|L};[MT]{I|L}WWGR{I|L}{I|L}{I|L};[MT]{I|L}{[SA]|[TG]}[DV]GR{I|L}{I|L}{I|L} 5.4808;4.2644;3.7175 +;-;- + 232 + NaN NaN 230414.3 NaN 13535 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16942 71.76 NaN 522260 35 0 19995 0.261 + 33837 YLKIIFFW 8 93 565.3243517026846 1128.634150472169 2 566.3082885742188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YLKIIFFW_ ENST00000083182.7_1_17:58533662-58538045:-|nuORF 10.183394434864962 0.5188676124868831 1 [Y{I|L}]V 3 6 24.978 0 0 2.2131 0 0 0 750.3800753229124 750.3800753229124 3.9786271147499264 0 0 0 0 0.3807196863200844 2 0 0 [Y{I|L}]V 2.2131 - 171 + NaN NaN 156081.6 NaN 13536 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16943 71.763 NaN 421150 35 0 57553 0.261 + 21571 PYMANVYLI 9 67 550.2782094694481 1098.5418660056962 2 550.2781982421875 MULTI HCD FTMS 0 0 0 16936 158813.96875 0.7221238030166223 -1 0.0284423828125 7 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 42.09456458481378 0.05572955244001856 1 VY{I|L}{I|L} 4 5 41.938 0 0 3.8176 0 0 592.2328358380875 0 592.2328358380875 0 35.25576261223691 0 0 0 1 0 0 0 + VY{I|L}{I|L} 3.8176 + + 93 NaN NaN 142692.4 NaN 13537 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16944 71.767 NaN 852180 35 0 112460 0.261 + 1597 AYVLNIVRF 9 110 547.8215579835019 1093.6285630338036 2 547.8215942382812 MULTI HCD FTMS 0 0 0 16936 124729.9765625 0.0455327032734143 11 -0.28693389892578125 8 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 100.37149154755038 0.004254194004462789 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F} 9 0 + 80.077 0 0 7.3221 7.3221 88.667 0 0 0 21.751736484954378 61.59957875171217 21.751736484954378 7.020534381044499 0 3.1677353201839438 1.6989700043360187 0 1.110924374808178 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}AA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}[R{I|L}]V{[QV]|[N{I|L}]|[RA]|[KV]} 7.3221;6.6802;5.1773;2.7549 +;-;-;- + 899 NaN NaN 221067.5 NaN 13538 3404 16936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16946 71.771 NaN 1933200 35 0 653750 0.327 + 17239 LYPEGLAQL 9 79 502.27734891351014 1002.5401448938203 2 502.2769470214844 MULTI HCD FTMS 0 0 0 16945 1072645.125 1 0 0 1 Unmodified _LYPEGLAQL_ ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF 78.7280429016045 0.006263961847259105 1 [Y{I|L}]PT[TP]AGA{I|L} 10 5 + 66.661 0 0 6.6492 6.6492 86.252 0 0 0 6.23106353692323 25.19672784728506 6.23106353692323 4.27440017027358 0 1.9489700043360187 1.3979400086720375 1.1307196863200843 0 [Y{I|L}]PT[TP]AGA{I|L};[Y{I|L}]PT[TP]QA{I|L};[Y{I|L}]PT[TP]AQ{I|L};[Y{I|L}]PT[QP]TA{I|L};{[QN]|[E{I|L}]|[KN]}ASW{I|L}TA{I|L};[QA]{I|L}G{I|L}[EP]Y{I|L};[QA]{I|L}G[EP]{I|L}Y{I|L};[QA]{I|L}G[EP]Y{I|L}{I|L};[Q{I|L}]AG{I|L}[EP]Y{I|L};[Q{I|L}]Q{I|L}[EP]Y{I|L} 6.6492;6.2228;5.3132;5.0871;4.933;3.5872;3.2869;3.0657;2.4663;2.1817 -;-;-;-;-;-;-;-;-;- 1726 NaN NaN 368374.1 NaN 13539 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16947 71.776 NaN 645240 35 0 60971 0.261 + -1 YSAITMLFNV 10 104 587.793567211209 NaN 0 587.8108520507812 PEAK HCD FTMS 0 0 0 16945 22671.865234375 0.26816247085857214 -8 0.22829437255859375 2 Oxidation (M) _YSAITM(Oxidation (M))LFNV_ REV__ENSG00000256574|ENST00000553795|OR13A1 18.1463463914782 0.29565035219289926 1 N{M(Oxidation (M))|F}{I|L}YDK 6 -1 24.245 0 0 2.0659 0 0 117.04704283208055 273.1257723443969 390.17281517647746 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}{I|L}YDK 2.0659 - 2081 + NaN NaN 186747.7 NaN 13540 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16948 71.779 NaN 905590 35 0 241210 0.261 + 21704 QADEEFQIL 9 77 546.7640650351817 1091.5135771371633 2 546.76416015625 MULTI HCD FTMS 0 0 0 16945 372608.90625 0.5683049178133824 -3 0.08069610595703125 3 Unmodified _QADEEFQIL_ ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1 55.50274090549119 0.023872834264864425 1 E{M(Oxidation (M))|F}Q{I|L}{I|L} 5 4 66.172 0 0 6.0624 0 0 443.1649342267594 0 443.1649342267594 0 28.036049848239344 0 0 0 1.8252574989159953 0 1.0044321917401078 0.3807196863200844 + E{M(Oxidation (M))|F}Q{I|L}{I|L} 6.0624 + + 154 NaN NaN 215778.2 NaN 13541 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16949 71.783 NaN 386540 35 0 24050 0.261 + 34323 YPDYYKIIL 9 91 594.3213001359899 1186.6280473387797 2 594.3216552734375 MULTI HCD FTMS 0 0 0 16945 129999.6015625 0.3228329962718883 4 -0.1045379638671875 4 Unmodified _YPDYYKIIL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant 53.40400417844725 0.026808823219830042 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DYYK{I|L}{I|L} 8 1 49.423 0 0 4.165 0 0 0 128.0796786485195 128.0796786485195 29.781381439366186 0 0 0 0 1.8494850021680094 1.3010299956639813 0.3494850021680094 0 + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DYYK{I|L}{I|L} 4.165 + + 310 NaN NaN 137919.2 NaN 13542 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16950 71.786 NaN 711390 35 0 82522 0.264 -1 PDGSSKGC 8 72 404.16961921983085 806.3246855064617 2 404.169921875 MULTI HCD FTMS 0 0 0 16945 338908.1875 0.032896690628222314 -6 0.1726226806640625 5 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.15417831205286 0 449.15417831205286 0 1.3380312008851565 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 10 NaN NaN 183504 NaN 13543 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16951 71.789 NaN 539690 35 0 125080 0.261 + 11994 KGAAVYFLF 9 69 508.28462168894964 1014.5546904446993 2 508.2850341796875 MULTI HCD FTMS 0 0 0 16945 231451.5 0.55099132639158 -2 0.0579071044921875 6 Unmodified _KGAAVYFLF_ ENST00000394464.6_1_5:142780416-142782924:-|nuORF 34.10243960390752 0.09241788333544565 1 VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 4 51.186 0 0 5.0451 0 0 327.1906910626969 0 327.1906910626969 0 38.42137133029226 0 0 0 1.9247425010840047 0 0 0 + VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.0451 + + 192 NaN NaN 158528.8 NaN 13544 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16952 71.793 NaN 197720 35 0 12656 0.261 -1 ECLYVNFDF 9 63 603.7609688849146 1205.5073848366292 2 603.7613525390625 MULTI HCD FTMS 0 0 0 16945 79321.9453125 0.48650702715777455 -3 0.08069610595703125 7 Carbamidomethyl (C) _EC(Carbamidomethyl (C))LYVNFDF_ ENSG00000104408|ENST00000220849|EIF3E 19.361941925380144 0.1930734562688509 1 [YV]{[CA]|SS}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 49.843 0 0 4.1346 4.1346 86.022 0 0 0 2.7157521689501607 31.77108148272637 2.7157521689501607 10.44068044350275 0 2 1.2218487496163564 0 0 [YV]{[CA]|SS}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[RV]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[RV]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[YT][HD]D{M(Oxidation (M))|F};[C(Carbamidomethyl (C))C][HN][RV]M{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}[RV][HD]M{[WT]|[RM]} 4.1346;3.2685;2.5047;1.5189;1.1654;0.18463 -;-;-;-;-;- 205 NaN NaN 110861.4 NaN 13545 3405 16945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16954 71.798 NaN 7414700 35 0 1930000 0.327 + -1 ATHMHLHLLF 10 84 618.3213634677372 1234.6281740022744 2 618.3211669921875 MULTI HCD FTMS 0 0 0 16953 5527787 0.9441644740499768 -1 0.02616119384765625 1 Oxidation (M) _ATHM(Oxidation (M))HLHLLF_ REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|0|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|3 14.838274106304384 0.3723198072575719 1 YYPEYK{I|L}{I|L} 8 -1 73.982 0 0 5.9923 0 0 0 162.05601401660047 162.05601401660047 30.662290030508146 0 0 0 0 2.6549471895720984 2 0.6109243748081782 0 YYPEYK{I|L}{I|L} 5.9923 - 552 NaN NaN 753129.2 NaN 13546 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16955 71.802 NaN 1636500 35 0 249220 0.263 + 18117 MPDFDLHL 8 81 494.23385529338344 986.4531576535669 2 494.23394775390625 MULTI HCD FTMS 0 0 0 16953 970092.9375 0.7039153535806313 1 -0.0294952392578125 2 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 129.2004930540761 0.03681736901630326 1 MPD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 84.136 0 0 8.5291 8.5291 96.536 0 0 0 48.283409326844264 8.979400086720375 8.979400086720375 35.34440644703906 0 2.004432191740108 1.5228787452803376 0.6747425010840047 0 + + MPD{M(Oxidation (M))|F}D{I|L}H{I|L};[DP]{M(Oxidation (M))|F}DM{I|L}H{I|L};{[{M(Oxidation (M))|F}D]|MM}PDM{I|L}H{I|L};[DP]{M(Oxidation (M))|F}D{I|L}MH{I|L};{[{M(Oxidation (M))|F}D]|MM}PD{I|L}MH{I|L};[DP]{M(Oxidation (M))|F}D{I|L}HM{I|L};{[{M(Oxidation (M))|F}D]|MM}PD{I|L}HM{I|L};[DP]{M(Oxidation (M))|F}VEMH{I|L};[DP]{M(Oxidation (M))|F}D{I|L}H{I|L}M;[H{I|L}]EP[YT]PM 8.5291;4.9462;4.798;3.2645;3.1164;2.6827;2.5346;2.0982;1.9697;1.9527 +;-;-;-;-;-;-;-;-;- + 763 + NaN NaN 330085.6 NaN 13547 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16956 71.806 NaN 1057800 35 0 121170 0.261 + 26748 SYEYRFLEF 9 97 627.2956702732074 1252.5767876132147 2 627.2953491210938 MULTI HCD FTMS 0 0 0 16953 814888.75 0.9748249972672762 1 -0.0294952392578125 3 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 114.18643581695662 0.002258955990713129 1 {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 9 0 + 80.082 0 0 6.3933 6.3933 86.75 0 0 0 4.137342758552705 70.34953499054386 4.137342758552705 6.677805497702991 0 2.5994850021680094 0 1.3274509799928715 0 + + {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[YE]SYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYRE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]SYRE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NP]T{I|L}ERYE[MT];{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}[YT]E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NP]T{I|L}ER[HC]H{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NW[WM]{I|L}P{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}{[ET]|[MV]}Y{M(Oxidation (M))|F} 6.3933;5.8602;4.5559;4.0228;2.9236;1.0957;1.0342;0.97722;0.71994;0.58968 +;-;-;-;-;-;-;-;-;- + 1410 NaN NaN 242208.1 NaN 13548 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16957 71.809 NaN 1141400 35 0 139620 0.261 + 19124 NFLSRSFYW 9 106 610.2980715549255 1218.581590176651 2 610.2986450195312 MULTI HCD FTMS 0 0 0 16953 643844.9375 1 0 0 4 Unmodified _NFLSRSFYW_ ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 103.82355648334675 0.003950725192926219 1 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW 9 0 + 94.254 0 0 7.7347 7.7347 89.013 0 0 0 6.355129762210922 16.478174818886373 6.355129762210922 6.355129762210922 0 2.8494850021680094 0 0.5994850021680094 1.2931576817365436 + + {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS{M(Oxidation (M))|F}YW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QVRS{M(Oxidation (M))|F}YW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRYYAW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QVGVS{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS[WY]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS[WY]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRYYAW;{[CT]|[{M(Oxidation (M))|F}G]}Y{M(Oxidation (M))|F}[WR]TG[VS];N{M(Oxidation (M))|F}TW{M(Oxidation (M))|F}TRT{M(Oxidation (M))|F} 7.7347;7.2132;5.1695;5.1492;5.1319;5.0753;4.8379;4.6277;3.729;3.7179 +;-;-;-;-;-;-;-;-;- + 2592 NaN NaN 268869.1 NaN 13549 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16958 71.812 NaN 791620 35 0 131450 0.261 + -1 IHSMSDFFIM 10 92 622.2800870245867 NaN 0 622.2944946289062 PEAK HCD FTMS 0 0 0 16953 44035.125 1 0 0 5 Oxidation (M) _IHSMSDFFIM(Oxidation (M))_ REV__chr4:67649211-67660890|138|12.25|0.08|7.18|-|0|TE_info:THE1D-int,THE1D-int_dup616,ERVL-MaLR,LTR,donor,+,67660890,67661264|UBA6,None|4 13.90604991867851 0.3282826376286837 1 {I|L}Y{M(Oxidation (M))|F}Y 4 -1 17.423 0 0 1.4022 0 0 165.050314046413 488.19431482486567 653.2446288712787 0 0 0 0 0 0 0 0 0 {I|L}Y{M(Oxidation (M))|F}Y 1.4022 - 975 + NaN NaN 213633 NaN 13550 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16959 71.816 NaN 425820 35 0 109180 0.261 + 25357 SEALALTQTW 10 55 560.2871576033441 1118.559762273488 2 560.2872924804688 MULTI HCD FTMS 0 0 0 16953 182625.25 1 0 0 6 Unmodified _SEALALTQTW_ ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF 41.95555342248728 0.12843670176738353 1 {I|L}[QT]TW 5 5 27.536 0 0 2.4617 0 0 471.23148105221065 0 471.23148105221065 0 8.952424927286842 0 0 0 1.3494850021680094 0 0.2614393726401688 0 + {I|L}[QT]TW 2.4617 + + 93 + NaN NaN 153835.6 NaN 13551 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16960 71.819 NaN 1310600 35 0 217470 0.261 + 16103 LPTEAEFQL 9 81 524.2717353896322 1046.5289178460644 2 524.2719116210938 MULTI HCD FTMS 0 0 0 16953 356382.65625 0.13570930985849122 -5 0.14635467529296875 7 Unmodified _LPTEAEFQL_ ENSG00000183508|ENST00000369448|TENT5C 69.10491478415734 0.009377850133389008 1 E{I|L}[TP]AE{M(Oxidation (M))|F}Q{I|L} 9 2 + 58.91 0 0 5.6291 5.6291 88.459 0 0 0 41.145614827714425 7.1438717317817435 7.1438717317817435 10.503122090841828 0 2.2302046884880937 0 0 1.6307196863200843 E{I|L}[TP]AE{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[TP]AE{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[CP]|[EA]}[TP]Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[TP][KG]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.6291;4.6255;2.406;1.061 -;-;-;- 926 + NaN NaN 283468.4 NaN 13552 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16961 71.822 NaN 522290 35 0 64782 0.261 + 29914 VFDTSIAQL 9 72 497.26572807895604 992.5169032247121 2 497.2652587890625 MULTI HCD FTMS 0 0 0 16953 209903.921875 1 0 0 8 Unmodified _VFDTSIAQL_ ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 106.94017166704063 0.003441928997083001 1 [{M(Oxidation (M))|F}V]DTS{I|L}AQ{I|L} 9 0 + 79.963 0 0 8.0565 8.0565 91.521 0 0 0 3.2568864632742844 65.80706579873059 3.2568864632742844 9.208187539523749 0 2.524227503252014 0 1.5669015600442577 0 + + [{M(Oxidation (M))|F}V]DTS{I|L}AQ{I|L};[{M(Oxidation (M))|F}V]DTS{I|L}A[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[YG]S{I|L}AQ{I|L};{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}AQ{I|L};{[QN]|[E{I|L}]|[KN]}[YG]S{I|L}A[AG]{I|L};{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}A[AG]{I|L};[{M(Oxidation (M))|F}V]DTS{I|L}K[PS];{[QN]|[E{I|L}]|[KN]}[YG]SRR{I|L};{[DS]|[MA]|[CV]|TT}[Y{I|L}][PS]AQ{I|L};[{M(Oxidation (M))|F}V]DTS{[NV]|[RG]}V{I|L} 8.0565;7.1288;6.3513;5.9008;5.4235;4.973;4.1305;2.5969;2.4688;2.1611 +;-;-;-;-;-;-;-;-;- + 418 NaN NaN 166245.4 NaN 13553 3406 16953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16963 71.827 NaN 434810 35 0 30935 0.327 + 34455 YPEVEIFRTL 10 92 633.8398291751703 1265.6651054171405 2 633.8395385742188 MULTI HCD FTMS 0 0 0 16962 153120.640625 0.5723045643990029 1 -0.01619720458984375 1 Unmodified _YPEVEIFRTL_ ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant 78.61045856554632 0.007382707188123376 1 YPEVE{I|L}{M(Oxidation (M))|F}RT{I|L} 10 0 + 113.74 0 0 8.9862 8.9862 95.703 0 0 0 92.76593150440647 7.269987279362624 7.269987279362624 17.69862697849564 0 3.278659694992122 1.6989700043360187 0.9802046884880937 0 + + YPEVE{I|L}{M(Oxidation (M))|F}RT{I|L};YPEVE{I|L}{M(Oxidation (M))|F}[KG][KG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVE{I|L}{M(Oxidation (M))|F}RT{I|L};YPP[HV]H{M(Oxidation (M))|F}RT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVE{I|L}[{I|L}P]{[HG]|PP}{I|L};[EP]YVE{I|L}{M(Oxidation (M))|F}RT{I|L};[EP]VYE{I|L}{M(Oxidation (M))|F}RT{I|L};[EP]VEY{I|L}{M(Oxidation (M))|F}RT{I|L};[EP]V[{I|L}P]{I|L}EV[HA]Y;YPP[HV]H{M(Oxidation (M))|F}[KG][KG] 8.9862;7.5878;6.9373;5.4665;4.9918;4.8229;4.7635;4.2515;4.1679;3.535 +;-;+;-;-;-;-;-;-;- + 886 + NaN NaN 146854.7 NaN 13554 3407 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16964 71.831 NaN 348980 35 0 88148 0.263 + 17224 LYNQVELF 8 57 513.2679974057827 1024.5214418783653 2 513.2675170898438 MULTI HCD FTMS 0 0 0 16962 142353.25 0.8652309855861757 2 -0.04888153076171875 2 Unmodified _LYNQVELF_ REV__tr|U7T6N5|U7T6N5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00309PE=4SV=1 18.13498045792455 0.4603629008820478 1 {I|L}Y 2 -1 42.206 0 0 4.1196 0 0 0 745.3502878265958 745.3502878265958 25.21652514092061 0 0 0 0 0.4247425010840047 2 0 0 {I|L}Y 4.1196 + + 38 + NaN NaN 132170.2 NaN 13555 3407 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16965 71.835 NaN 762020 35 0 45243 0.261 + 31840 VYMIRVYLL 9 107 593.3389239719324 1184.6632950106648 2 593.3384399414062 MULTI HCD FTMS 0 0 0 16962 141857.6875 0.5932073132309085 -5 0.1363525390625 3 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 81.61307344734483 0.005330412723537057 1 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 66.104 0 0 5.58 5.58 85.2 0 0 0 7.015449934959719 7.015449934959719 7.015449934959719 6.262874945799759 0 2.2104093769761874 1.0969100130080565 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};VY{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}RYV{I|L}{I|L};[YV]K[C(Carbamidomethyl (C))K]VY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}VY{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L} 5.58;5.0513;4.9878;4.9491;4.7072;4.5292;4.4828;4.4828;4.4204;4.3475 +;-;+;-;-;-;-;-;-;- + 4247 NaN NaN 204357.6 NaN 13556 3407 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16966 71.838 NaN 551680 35 0 38621 0.261 -1 FPIEAGDMF 9 91 521.7312459008294 1041.4479388684588 2 521.7313842773438 MULTI HCD FTMS 0 0 0 16962 71501.59375 0.3241055265772294 14 -0.389495849609375 4 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 37.97399986684836 0.07464525285885698 1 ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 39.258 0 0 3.7695 0 0 357.2049732892594 0 357.2049732892594 0 27.619478172486467 0 0 0 1.4247425010840047 0 0.2614393726401688 0 ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7695 - 362 NaN NaN 164514.9 NaN 13557 3407 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16968 71.843 NaN 19403000 35 0 3380800 0.327 + 6140 FPEHIFPAL 9 115 535.7874980933541 1069.560443253508 2 535.7879638671875 MULTI HCD FTMS 0 0 0 16967 9569692 0.6618559647175845 -3 0.0718536376953125 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 131.29775728308752 0.0005262696486345744 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 85.967 0 0 8.0376 8.0376 92.435 0 0 0 19.621892823592958 55.30058092292154 19.621892823592958 9.827796776480454 0 2.263632853717045 1.3979400086720375 0.8539171939081174 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[H{I|L}]E{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{M(Oxidation (M))|F}{I|L}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L} 8.0376;7.1187;6.8676;6.5117;6.3885;6.3496;6.0656;5.9989;5.9702;5.7006 +;-;-;-;-;-;-;-;-;- + 9110 NaN NaN 1036176.2 NaN 13558 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16969 71.848 NaN 1813000 35 0 167730 0.261 + 13183 KYLTEGLLQF 10 108 606.3372036148426 1210.659854296485 2 606.337646484375 MULTI HCD FTMS 0 0 0 16967 741058 0.15301329490611945 6 -0.16944122314453125 2 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 146.67986876980638 2.849702000123902E-07 1 [YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F} 10 2 + 104.86 0 0 8.6612 8.6612 67.821 0 0 0 6.759687322722812 82.6869160710703 6.759687322722812 0 0 2.9247425010840047 0 1.524227503252014 0.8252574989159953 [YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAD{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEG{I|L}{I|L}Q{M(Oxidation (M))|F};[K{I|L}]YTEG{I|L}{I|L}Q{M(Oxidation (M))|F};[K{I|L}]YTAD{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAEV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEAV{I|L}Q{M(Oxidation (M))|F} 8.6612;8.6612;8.5427;8.5427;8.1016;8.1016;8.0297;8.0297;7.9831;7.9831 -;+;-;-;-;-;-;-;-;- + 8938 NaN NaN 373971.5 NaN 13559 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16970 71.851 NaN 612340 35 0 64111 0.261 + 11535 IYSIDFTRF 9 84 581.3007795287762 1160.5870061243522 2 581.3006591796875 MULTI HCD FTMS 0 0 0 16967 309113.28125 0.23821643684443444 7 -0.18561553955078125 3 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 93.16586880292088 0.00444300900000894 1 {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F} 9 0 + 88.986 0 0 7.6673 7.6673 94.239 0 0 0 40.48606762693608 16.478174818886373 16.478174818886373 22.409014548842862 0 2.35697580801237 1.6989700043360187 0.7614393726401688 0 + + {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};[Y{I|L}]S{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F};[YT]V{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};[YT]V{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PA][NP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PA][NP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.6673;5.7365;5.1176;4.4858;3.0196;2.547;1.6671 +;-;-;-;-;-;- + 2377 + NaN NaN 170466.9 NaN 13560 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16971 71.854 NaN 637920 35 0 126270 0.261 + 23456 RLPSSWALF 9 84 538.7976616177166 1075.580770302233 2 538.7973022460938 MULTI HCD FTMS 0 0 0 16967 73727.4765625 0.20599972827669535 -4 0.101318359375 4 Unmodified _RLPSSWALF_ ENSG00000129636|ENST00000320640|ITFG1 29.081581746732265 0.1154664336125038 1 VA{I|L}{M(Oxidation (M))|F} 4 6 41.855 0 0 3.8914 0 0 627.3213978498062 0 627.3213978498062 0 30.17220322351953 0 0 0 1.3807196863200843 0 0 0 VA{I|L}{M(Oxidation (M))|F} 3.8914 - 276 NaN NaN 185707.6 NaN 13561 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16972 71.858 NaN 750220 35 0 81068 0.261 + 14515 LFDFTGQI 8 70 470.74243466578787 939.4703163983758 2 470.7424011230469 MULTI HCD FTMS 0 0 0 16967 170062.359375 0.38384971107561805 -5 0.1297607421875 5 Unmodified _LFDFTGQI_ REV__ENSG00000133116|ENST00000380099|KL 23.1484247019978 0.4234759064137959 1 {[QN]|[E{I|L}]|[KN]}P[PG]WE{I|L} 8 -1 + 31.476 0 0 3.3504 3.3504 83.005 0 0 0 4.436974992327123 18.711871555884265 4.436974992327123 8.45098040014257 0 0.4247425010840047 0 0.2614393726401688 0 {[QN]|[E{I|L}]|[KN]}P[PG]WE{I|L};[EP]{I|L}[PG]WE{I|L};{[QN]|[E{I|L}]|[KN]}P[PG]{[QN]|[E{I|L}]|[KN]}W 3.3504;2.4509;0.75713 -;-;- 198 NaN NaN 197135.7 NaN 13562 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16973 71.861 NaN 386050 35 0 30357 0.261 -1 MVLTEEPLL 9 70 530.7835891813753 1059.5526254295505 2 530.7658081054688 MULTI HCD FTMS 0 0 0 16967 24713.4375 0.38352826067584106 1 -0.032684326171875 6 Oxidation (M) _M(Oxidation (M))VLTEEPLL_ ENSG00000118217|ENST00000367942|ATF6 32.30548876998284 0.10066689432505688 1 D{I|L}PEP{I|L}{I|L} 7 -1 42.762 0 0 4.0358 0 0 264.11412245918126 0 264.11412245918126 0 26.56402474146999 0 0 0 0.6861818737241735 0 0.6382104921644451 0 D{I|L}PEP{I|L}{I|L} 4.0358 - 229 NaN NaN 135943 NaN 13563 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16974 71.864 NaN 218420 35 0 78501 0.261 -1 0 56 564.3591393796879 563.3518629130879 1 564.359619140625 MULTI HCD FTMS 0 0 0 16967 102291.8828125 0.7346048890694726 3 -0.0947113037109375 7 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 17.474 0 0 3.1018 0 0 285.18848508281286 0 285.18848508281286 0 11.989700043360187 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 3.1018 - 15 + NaN NaN 111789 NaN 13564 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16975 71.868 NaN 205950 35 0 24426 0.261 + 7886 FYTVGSGEL 9 44 486.7375450386057 971.4605371440114 2 486.7370910644531 MULTI HCD FTMS 0 0 0 16967 69717.796875 0.6378046811529785 -7 0.192047119140625 8 Unmodified _FYTVGSGEL_ tr|U7T2E8|U7T2E8_FUSNUPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mraYPE=3SV=1 7.289230182591677 0.29575926068275815 1 G{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 8 26.938 0 0 2.773 0 0 503.26383411842386 0 503.26383411842386 0 6.9897000433601875 0 0 0 0 0 0 0 G{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.773 - 35 + NaN NaN 124020.6 NaN 13565 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16976 71.871 NaN 121690 35 0 12918 0.261 + 8192 GQLFDTALL 9 55 489.268805616118 976.523058299036 2 489.26861572265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _GQLFDTALL_ REV__ENSG00000275591|ENST00000618742|XKR5 24.020572477871973 0.15282392193088168 1 A{I|L}{I|L} 3 -1 36.198 0 0 3.7068 0 0 661.3101877244223 0 661.3101877244223 0 25.228787452803374 0 0 0 1 0 0 0 A{I|L}{I|L} 3.7068 + + 31 NaN NaN 97286.1 NaN 13566 3408 16967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16978 71.876 NaN 3021900 35 0 360060 0.327 + 13274 KYMDINFDF 9 120 596.7710756229087 1191.5275983126173 2 596.77099609375 MULTI HCD FTMS 0 0 0 16977 2141783 0.8918067776895389 2 -0.0620269775390625 1 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 189.73149822037072 4.1025052375754644E-13 1 [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 98.878 0 0 8.2984 8.2984 90.009 0 0 0 3.2568864632742844 41.445990182825426 3.2568864632742844 6.491662398603154 0 2.774227503252014 0 1.545114016114533 1.1861818737241734 + + [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GV{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[HG]|PP}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.2984;7.7536;7.6722;7.5256;7.2484;7.2098;6.9808;6.8994;6.8762;6.7755 +;-;-;-;-;-;-;-;-;- + 17232 NaN NaN 484385.9 NaN 13567 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16979 71.88 NaN 1089200 35 0 96800 0.261 + 19750 NYAWVYYHL 9 97 614.7929287250602 1227.5713045169202 2 614.79345703125 MULTI HCD FTMS 0 0 0 16977 403068.84375 0.007183523315765757 98 -2.7095489501953125 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 1 [YN]AWVYYH{I|L} 9 0 + 112.63 0 0 9.1754 9.1754 95.935 0 0 0 23.244171855527966 16.478174818886373 16.478174818886373 17.83809673312028 0 2.774227503252014 1.6989700043360187 0 2.40803062334053 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYA[{M(Oxidation (M))|F}V]VADA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]WAVW[YN]{I|L};NYADAV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};NS{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]VADA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NS{M(Oxidation (M))|F}WVYYH{I|L};{[WN]|[YH]}YAVYYH{I|L} 9.1754;7.7223;7.2819;6.7935;6.7147;5.3403;5.2033;5.1686;4.9212;4.8852 +;-;+;-;-;-;-;-;-;- + 2211 NaN NaN 241786.8 NaN 13568 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16980 71.884 NaN 625280 35 0 44420 0.261 -1 QYQIIMTMI 9 99 586.7897642615401 1171.56497558988 2 586.7908325195312 MULTI HCD FTMS 0 0 0 16977 245113.28125 0.8655615184996687 -1 0.032684326171875 3 2 Oxidation (M) _QYQIIM(Oxidation (M))TM(Oxidation (M))I_ ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2 24.020572477871973 0.15282392193088168 1 {I|L}A{M(Oxidation (M))|F}AG{M(Oxidation (M))|F} 6 -1 48.365 0 0 4.1282 0 0 547.2759358568344 0 547.2759358568344 0 30.644490976677044 0 0 0 1.5 0 0 0 {I|L}A{M(Oxidation (M))|F}AG{M(Oxidation (M))|F} 4.1282 - 1379 NaN NaN 192137.2 NaN 13569 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16981 71.887 NaN 584310 35 0 139780 0.261 + 23457 RLPSSWALF 9 66 538.7976616177166 1075.580770302233 2 539.2994995117188 MULTI HCD FTMS 0 0 0 16977 149987.453125 0.6080231438034218 -2 0.04888153076171875 4 Unmodified _RLPSSWALF_ ENSG00000129636|ENST00000320640|ITFG1 39.94969957227396 0.06557568441294001 1 [R{I|L}][PS]{[WS]|[C(Carbamidomethyl (C)){I|L}]}A{I|L}{M(Oxidation (M))|F} 9 0 + 48.847 0 0 4.5415 4.5415 90.251 0 0 0 7.649087242336776 33.59666076009212 7.649087242336776 48.84697482522071 0 1.9247425010840047 1.0969100130080565 0.4247425010840047 0 + + [R{I|L}][PS]{[WS]|[C(Carbamidomethyl (C)){I|L}]}A{I|L}{M(Oxidation (M))|F} 4.5415 + + 81 NaN NaN 167239.7 NaN 13570 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16982 71.891 NaN 473360 35 0 23947 0.261 + 2910 DYSPYFKTI 9 82 567.278739176949 1132.5429254206979 2 567.2796630859375 MULTI HCD FTMS 0 0 0 16977 87234.8359375 0.5538993944243867 3 -0.08472442626953125 5 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 36.506200033944 0.08138327636155518 1 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 34.978 0 0 3.0885 0 0 0 764.3982165186072 764.3982165186072 11.113014731492537 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3054621874040891 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.0885 + + 879 NaN NaN 155000.9 NaN 13571 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16983 71.894 NaN 233330 35 0 31108 0.261 + 32683 WPIEGEEL 8 52 486.7375450386057 971.4605371440114 2 486.7372131347656 MULTI HCD FTMS 0 0 0 16977 31707.697265625 0.29007396462708607 -6 0.162445068359375 6 Unmodified _WPIEGEEL_ REV__ENSG00000181191|ENST00000374571|PJA1;REV__ENSG00000198961|ENST00000361189|PJA2;REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000181191|Q8NG27|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2 13.50788311687929 0.4944073034352369 1 V{[NV]|[RG]}[QT]V{M(Oxidation (M))|F} 7 -1 26.298 0 0 2.7071 0 0 166.02727187366128 0 166.02727187366128 0 -2.7253805704161493 -2.7253805704161493 0 0 0 0 0.3494850021680094 0.3807196863200844 V{[NV]|[RG]}[QT]V{M(Oxidation (M))|F} 2.7071 - 24 + NaN NaN 115454.4 NaN 13572 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16984 71.897 NaN 133490 35 0 18216 0.261 -1 LFMMHCVEVL 10 41 639.8052595502007 1277.5959661672014 2 639.8056030273438 MULTI HCD FTMS 0 0 0 16977 13653.25390625 0.06827716720723472 16 -0.45871734619140625 7 Carbamidomethyl (C) _LFMMHC(Carbamidomethyl (C))VEVL_ ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP 3.5964929083625545 0.45626689593999237 1 V{I|L} 2 -1 25.969 0 0 2.0327 0 0 1047.433541864397 0 1047.433541864397 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.0327 + + 5 NaN NaN 101663.9 NaN 13573 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16985 71.9 NaN 385320 35 0 14203 0.261 + 33292 YFNNESDII 9 87 557.7550640668748 1113.4955752005494 2 557.7548217773438 MULTI HCD FTMS 0 0 0 16977 63460.890625 0.884151183759906 2 -0.0620269775390625 8 Unmodified _YFNNESDII_ ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11 18.13498045792455 0.20367413111508956 1 {[YD]|[{M(Oxidation (M))|F}M]}PVN[R{M(Oxidation (M))|F}]G{M(Oxidation (M))|F} 9 8 + 42.518 0 0 3.8185 3.8185 82.775 0 0 0 10.580211763838662 13.467874862246564 10.580211763838662 6.866654986684729 0 0.28872548999643577 1.154901959985743 0 0 {[YD]|[{M(Oxidation (M))|F}M]}PVN[R{M(Oxidation (M))|F}]G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[HV]YTG{M(Oxidation (M))|F};[C(Carbamidomethyl (C))N]TVNM[KT]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}PVGG[R{M(Oxidation (M))|F}]G{M(Oxidation (M))|F};[C(Carbamidomethyl (C))N]S{I|L}NM[KT]{M(Oxidation (M))|F};[C(Carbamidomethyl (C))N]TVGGM[KT]{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[WQ]EEH{I|L};[C(Carbamidomethyl (C))N]S{I|L}GGM[KT]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[NG]VNM[KT]{M(Oxidation (M))|F};[C(Carbamidomethyl (C))N]S[NP]{M(Oxidation (M))|F}[KT]{M(Oxidation (M))|F} 3.8185;3.2018;3.1742;2.9915;2.6335;2.3472;2.1753;1.8066;1.2144;0.87359 -;-;-;-;-;-;-;-;-;- 849 + NaN NaN 134200.8 NaN 13574 3409 16977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16987 71.905 NaN 3807500 35 0 395120 0.327 + 21675 PYYSKFILI 9 118 572.3261287977801 1142.6377046623602 2 572.3261108398438 MULTI HCD FTMS 0 0 0 16986 2888245.5 0.8272489779130695 3 -0.081329345703125 1 Unmodified _PYYSKFILI_ ENSG00000164815|ENST00000297431|ORC5 129.77232118876745 0.0006187813247758304 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 9 0 + 102.36 0 0 8.9584 8.9584 90.809 0 0 0 6.092145186756014 6.092145186756014 6.092145186756014 6.092145186756014 0 2.555462187404089 2 1.2984550065040281 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};PYYSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SYK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};YYPSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}ESK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KA]YY{I|L}{I|L}{I|L};[YG]{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{I|L}{I|L}{M(Oxidation (M))|F}KSYYP{I|L};{I|L}{I|L}{M(Oxidation (M))|F}KSYPY{I|L};YY[VG][VG]{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 8.9584;8.4252;7.6857;7.3822;4.5131;4.0897;3.3911;3.2366;3.1919;2.4476 +;+;-;-;-;-;-;-;-;- + 2570 NaN NaN 555474.2 NaN 13575 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16988 71.91 NaN 3394200 35 0 295960 0.253 + 20717 PFVDHVFTF 9 118 554.7767785582037 1107.5390041832072 2 554.77685546875 MULTI HCD FTMS 0 0 0 16986 2744074 1 0 0 2 Unmodified _PFVDHVFTF_ ENSG00000113460|ENST00000336767|BRIX1 225.63253280303684 3.884279688775432E-24 1 P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 113.71 0 0 10.267 10.267 92.693 0 0 0 52.90221594415691 16.478174818886373 16.478174818886373 8.010752252503366 0 2.774227503252014 0 2.7658715643802765 0 + + P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}PVDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHDV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHDVT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHD{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};P{[QS]|[NT]}PWV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]PHDV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHDTV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHD{M(Oxidation (M))|F}TV{M(Oxidation (M))|F};P{[QS]|[NT]}PVW{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 10.267;9.544;9.2193;8.1037;7.8609;7.2734;7.03;6.5149;6.5082;6.4448 +;-;-;-;-;-;-;-;-;- + 12246 + NaN NaN 574046.6 NaN 13576 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16989 71.913 NaN 518450 35 0 85941 0.261 -1 MPEVDLNL 8 62 473.73125752503404 945.4479621168681 2 473.7311096191406 MULTI HCD FTMS 0 0 0 16986 453261.96875 0.8412009996247637 -1 0.02941131591796875 3 Oxidation (M) _M(Oxidation (M))PEVDLNL_ ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 70.71552829651908 0.028868882208589616 1 D{I|L}N{I|L} 4 -1 48.51 0 0 5.1309 0 0 472.20002944160314 0 472.20002944160314 0 29.05914439460698 0 0 0 0.9247425010840047 0 0.7742275032520141 0.3807196863200844 D{I|L}N{I|L} 5.1309 + + 86 NaN NaN 162517.4 NaN 13577 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16990 71.916 NaN 822400 35 0 254060 0.261 + 20298 NYPETLGRLLI 11 74 644.8667645071672 1287.7189760811343 2 644.866943359375 MULTI HCD FTMS 0 0 0 16986 205358.34375 0.48746518684404855 3 -0.081329345703125 4 Unmodified _NYPETLGRLLI_ ENSG00000103184|ENST00000251170|SEC14L5;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 46.0223103267499 0.09816448733256712 1 [YN][EP][{I|L}T]GR{I|L}{I|L}{I|L} 11 0 + 50.691 0 0 3.9365 3.9365 89.534 0 0 0 29.721672811037756 9.229404389495919 9.229404389495919 50.69077294111832 0 2.274227503252014 2 0 0 + + [YN][EP][{I|L}T]GR{I|L}{I|L}{I|L} 3.9365 + + 49 + NaN NaN 207757.8 NaN 13578 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16991 71.92 NaN 584910 35 0 63883 0.261 + 32638 WLYSVPWGF 9 79 577.7860767409635 1153.557600548727 2 577.7850952148438 MULTI HCD FTMS 0 0 0 16986 263931 0.9926222585568473 -1 0.02941131591796875 5 Unmodified _WLYSVPWGF_ ENSG00000188501|ENST00000695545|LCTL;nc|ENSG00000188501|Q6UWM7-2|LCTL 23.1484247019978 0.1603590852062899 1 [Y{I|L}][RD][TP]WG{M(Oxidation (M))|F} 9 4 + 49.842 0 0 4.3207 4.3207 81.381 0 0 0 1.9087745650595878 11.165055005395175 1.9087745650595878 2.3599814125414227 0 1.4247425010840047 1.5228787452803376 0.3252574989159953 0 [Y{I|L}][RD][TP]WG{M(Oxidation (M))|F};[Y{I|L}][RD]{I|L}A{[CP]|[EA]}G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]E[R{I|L}]AWG{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V]{M(Oxidation (M))|F}PA{[CP]|[EA]}G{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V][SG]NAWG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][RK]NA{[DA]|[EG]}G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}WG{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V]M[TP]WG{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V]{M(Oxidation (M))|F}D[RP]G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][RD]VVWG{M(Oxidation (M))|F} 4.3207;4.1161;4.0411;3.0607;2.9498;2.946;2.4786;2.4786;2.4145;2.3587 -;-;-;-;-;-;-;-;-;- 807 NaN NaN 175947.5 NaN 13579 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16992 71.923 NaN 381840 35 0 53179 0.264 + 30168 VGYSRVLG 8 59 425.74199315874114 NaN 0 425.7421569824219 PEAK HCD FTMS 0 0 0 16986 67045.2890625 0.553835582835389 4 -0.1073455810546875 6 Unmodified _VGYSRVLG_ ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L 8.593279151180031 0.38822285293237185 1 Y 1 7 6.9897 0 0 0.82283 0 0 551.3383431516636 132.04554163150627 683.3838847831698 0 0 0 0 0 0 0 0 0 + Y 0.82283 + + 8 + NaN NaN 136125.8 NaN 13580 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16993 71.926 NaN 392550 35 0 39071 0.261 + 6446 FPIEAGDMF 9 74 521.7312459008294 1041.4479388684588 2 521.7316284179688 MULTI HCD FTMS 0 0 0 16986 79627.1328125 0.36093732260380973 17 -0.49509429931640625 7 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 43.85829265575387 0.04763305254408404 1 ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 6 43.5 0 0 4.1769 0 0 357.2057638731566 0 357.2057638731566 0 29.299377089902663 0 0 0 1.7302046884880937 0 0 0 ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1769 - 291 NaN NaN 137362.5 NaN 13581 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16994 71.93 NaN 368340 35 0 62691 0.261 -1 VYNPMPFEL 9 63 563.2680937681886 1124.521634603177 2 562.7861328125 MULTI HCD FTMS 0 0 0 16986 66484.125 0.6090767957115106 -2 0.06209564208984375 8 Oxidation (M) _VYNPM(Oxidation (M))PFEL_ ENSG00000167632|ENST00000438773|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9 22.736283301280096 0.1639198954644489 1 KA{[WT]|[RM]} 4 -1 26.198 0 0 2.3297 0 0 620.2633471049334 0 620.2633471049334 0 4.431890546242343 0 0 0 1 0 0 0 KA{[WT]|[RM]} 2.3297 - 111 + NaN NaN 147315.4 NaN 13582 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16995 71.933 NaN 93650 35 0 6746.3 0.261 + 15085 LMDNIDTF 8 52 484.72240107559236 967.4302492179847 2 484.72210693359375 MULTI HCD FTMS 0 0 0 16986 28748.669921875 0.4343415973792882 3 -0.081329345703125 9 Unmodified _LMDNIDTF_ ENSG00000105576|ENST00000425528|TNPO2;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2 14.581692164780916 0.48650662947107914 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.6006 0 0 802.3514813730613 0 802.3514813730613 0 2.350912757663222 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.6006 + + 24 + NaN NaN 90696.2 NaN 13583 3410 16986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16997 71.938 NaN 6192100 35 0 827770 0.327 + 7970 GEGPCPTF 8 84 404.16961921983085 806.3246855064617 2 404.1700439453125 MULTI HCD FTMS 0 0 0 16996 10302197 1 0 0 1 Unmodified _GEGPCPTF_ ENST00000587501.1_1_17:73789806-73789887:+|nuORF 2.577480529830294 0.5381683276125971 1 {I|L} 1 8 7.3464 0 0 0.91109 0 0 59.048331601967966 631.181447789366 690.229779391334 0 0 0 0 0 0.2742275032520141 0 0 0 {I|L} 0.91109 - 19 + NaN NaN 706989.6 NaN 13584 3411 16996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16998 71.942 NaN 1326100 35 0 111890 0.261 + 30726 VPINVVETL 9 79 492.292338565226 982.570124197252 2 492.292236328125 MULTI HCD FTMS 0 0 0 16996 1029337.4375 1 0 0 2 Unmodified _VPINVVETL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 123.45060196383646 0.0010021686353097689 1 [VP]{I|L}NVVET{I|L} 9 0 + 92.589 0 0 9.4232 9.4232 91.155 0 0 0 19.990823894397565 22.930599746173215 19.990823894397565 5.964015683995768 0 1.9247425010840047 1.5228787452803376 0.3807196863200844 1.0994850021680094 + + [VP]{I|L}NVVET{I|L};[VP]QVVVET{I|L};[VP]T[KP]VET{I|L};[VP]{I|L}GGVVET{I|L};[VP][AG]VVVET{I|L};[{I|L}T]EVVN{I|L}PV;[{I|L}T]EVVN[VP]{I|L};[{I|L}T]EVVGG{I|L}PV;[{I|L}T]EVVGG[VP]{I|L};[VP]T[TA][VS]{I|L}PV 9.4232;8.8162;7.831;7.367;6.4492;5.9065;5.2282;4.9694;4.291;3.0909 +;-;-;-;-;-;-;-;-;- + 407 NaN NaN 291174.1 NaN 13585 3411 16996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 16999 71.946 NaN 989120 35 0 290620 0.261 + 17240 LYPEGLAQL 9 72 502.27734891351014 1002.5401448938203 2 502.27691650390625 MULTI HCD FTMS 0 0 0 16996 672117.875 0.6265985453483509 6 -0.14971160888671875 3 Unmodified _LYPEGLAQL_ ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF 65.23502041540118 0.010630085227462206 1 {[QN]|[E{I|L}]|[KN]}ASW{I|L}TA{I|L} 9 6 + 59.747 0 0 5.9596 5.9596 92.127 0 0 0 6.127042801912879 32.7524439246897 6.127042801912879 35.722965919309644 0 1.2614393726401687 0 0.805462187404089 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}ASW{I|L}TA{I|L};[QA]{I|L}G{I|L}[EP]Y{I|L};[Q{I|L}]Q{I|L}[EP]Y{I|L};[Q{I|L}]AG{I|L}[EP]Y{I|L};[QA]{I|L}G{I|L}{I|L}{I|L}[{M(Oxidation (M))|F}E];[EP]KK[EP]Y{I|L} 5.9596;2.3963;1.3265;1.1965;0.22698;0.10774 -;-;-;-;-;- 585 NaN NaN 227265.5 NaN 13586 3411 16996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17000 71.949 NaN 1614400 35 0 290150 0.261 + 12683 KWLLYPTEI 9 93 581.8290784894222 1161.6436040456442 2 581.8290405273438 MULTI HCD FTMS 0 0 0 16996 1045192.375 0.7480723460375165 -4 0.11090850830078125 4 Unmodified _KWLLYPTEI_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 89.40071534611396 0.0045416704840156395 1 [WK]{I|L}{I|L}YPTE{I|L} 9 0 + 64.83 0 0 5.5809 5.5809 82.865 0 0 0 1.1186505820347463 6.309550861898465 1.1186505820347463 1.1186505820347463 0 2.416386562212267 0 0.4247425010840047 0 + + [WK]{I|L}{I|L}YPTE{I|L};{I|L}[WK]{I|L}YPTE{I|L};{I|L}{M(Oxidation (M))|F}TP[KA][EP]{I|L}{M(Oxidation (M))|F};[TP]E{I|L}Y{I|L}[WK]{I|L};{[ET]|[MV]}P{I|L}Y{I|L}[WK]{I|L};{I|L}{M(Oxidation (M))|F}[KG]{I|L}Y{I|L}P[DP];[TP]EY{I|L}{I|L}[WK]{I|L};{[ET]|[MV]}PY{I|L}{I|L}[WK]{I|L};{I|L}{M(Oxidation (M))|F}[KG]{I|L}{I|L}YP[DP];[VP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}[KG]E{I|L} 5.5809;5.4846;2.9105;2.3065;2.1549;2.0583;2.0474;1.8958;1.7992;1.3684 +;-;-;-;-;-;-;-;-;- + 1515 NaN NaN 327408.8 NaN 13587 3411 16996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17001 71.952 NaN 588830 35 0 120280 0.261 + 21705 QADEEFQIL 9 72 546.7640650351817 1091.5135771371633 2 546.7639770507812 MULTI HCD FTMS 0 0 0 16996 364945.9375 0.5566173205696564 3 -0.07472991943359375 5 Unmodified _QADEEFQIL_ ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1 39.94969957227396 0.06557568441294001 1 {M(Oxidation (M))|F}Q{I|L}{I|L} 4 5 49.825 0 0 4.5648 0 0 572.2068940605647 0 572.2068940605647 0 21.231792411473677 0 0 0 1.5 0 0 0.28872548999643577 + {M(Oxidation (M))|F}Q{I|L}{I|L} 4.5648 + + 167 NaN NaN 191823.8 NaN 13588 3411 16996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17002 71.956 NaN 478300 35 0 107900 0.261 + 11995 KGAAVYFLF 9 71 508.28462168894964 1014.5546904446993 2 508.28448486328125 MULTI HCD FTMS 0 0 0 16996 306518.90625 0.7296961079050421 4 -0.09090423583984375 6 Unmodified _KGAAVYFLF_ ENST00000394464.6_1_5:142780416-142782924:-|nuORF 34.10243960390752 0.09241788333544565 1 VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 4 47.251 0 0 4.6573 0 0 327.19148451972814 0 327.19148451972814 0 36.79297219607513 0 0 0 1.8807196863200843 0 0 0 + VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.6573 + + 95 NaN NaN 152698.2 NaN 13589 3411 16996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17004 71.961 NaN 4801400 35 0 1224300 0.326 + -1 ATHMHLHLLF 10 85 618.3213634677372 1234.6281740022744 2 618.3211059570312 MULTI HCD FTMS 0 0 0 17003 3011229 0.5143279661515608 5 -0.12701416015625 1 Oxidation (M) _ATHM(Oxidation (M))HLHLLF_ REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|0|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|3 14.838274106304384 0.3723198072575719 1 YYPEYK{I|L} 7 -1 67.228 0 0 5.4452 0 0 0 275.1403902643188 275.1403902643188 31.32068444291761 0 0 0 0 2.1549471895720984 2 0.3494850021680094 0 YYPEYK{I|L} 5.4452 - 528 + NaN NaN 617247.9 NaN 13590 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17005 71.965 NaN 2625300 35 0 471030 0.262 + 16104 LPTEAEFQL 9 88 524.2717353896322 1046.5289178460644 2 524.271728515625 MULTI HCD FTMS 0 0 0 17003 1937602.5 0.7378324770962735 1 -0.0260162353515625 2 Unmodified _LPTEAEFQL_ ENSG00000183508|ENST00000369448|TENT5C 114.6490535036381 0.0021834323520089267 1 [{I|L}P]TEAE{M(Oxidation (M))|F}Q{I|L} 9 0 + 76.216 0 0 7.2827 7.2827 92.142 0 0 0 14.154237220656682 52.182088034485815 14.154237220656682 13.015384402724592 0 2.048455006504028 1 1.736346736360778 0.3807196863200844 + + [{I|L}P]TEAE{M(Oxidation (M))|F}Q{I|L};[{I|L}P]TEAE{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[TP]AE{M(Oxidation (M))|F}Q{I|L};E{I|L}[TP]AE{M(Oxidation (M))|F}Q{I|L};[{I|L}P]T{[YD]|[{M(Oxidation (M))|F}M]}[TP]Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[CP]|[EA]}[TP]Q{I|L};E{I|L}[TP][PS]YQ{I|L};E{I|L}[PG]{NN|[MP]|[D{I|L}]|[EV]}YQ{I|L};E{I|L}[TP]T[VP][YQ];E{I|L}[TP][PS]E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.2827;6.039;5.9032;5.7662;3.783;3.6199;2.8586;1.8013;1.4211;1.3753 +;-;-;-;-;-;-;-;-;- + 2265 NaN NaN 480860.9 NaN 13591 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17006 71.969 NaN 730580 35 0 93005 0.261 + 18118 MPDFDLHL 8 79 494.23385529338344 986.4531576535669 2 494.23382568359375 MULTI HCD FTMS 0 0 0 17003 475690.75 0.3451690137485262 7 -0.19599151611328125 3 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 89.42679046578446 0.023235607516423472 1 MPD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 79.774 0 0 8.0869 8.0869 95.873 0 0 0 56.586163651460524 8.979400086720375 8.979400086720375 37.156366524931386 0 2.024227503252014 1.6989700043360187 0.5866968715561641 0 + + MPD{M(Oxidation (M))|F}D{I|L}H{I|L};[DP]{M(Oxidation (M))|F}DM{I|L}H{I|L};[DP]{M(Oxidation (M))|F}D[H{I|L}]M{I|L};[DP]{M(Oxidation (M))|F}D[H{I|L}]{I|L}M 8.0869;4.3203;1.2227;0.81931 +;-;-;- + 221 + NaN NaN 194207.1 NaN 13592 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17007 71.972 NaN 468650 35 0 45622 0.261 + 19125 NFLSRSFYW 9 87 610.2980715549255 1218.581590176651 2 610.2987060546875 MULTI HCD FTMS 0 0 0 17003 236001.40625 0.3665500689752647 6 -0.1598052978515625 4 Unmodified _NFLSRSFYW_ ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 71.70789743142352 0.008535567138151097 1 {[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS{M(Oxidation (M))|F}YW 10 2 + 81.133 0 0 6.658 6.658 85 0 0 0 1.5321251377534395 10.522562268522577 1.5321251377534395 1.5321251377534395 0 2.1747425010840047 0 0.3252574989159953 0.6747425010840047 {[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS{M(Oxidation (M))|F}YW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW;[Y{I|L}]{[QG]|[NA]}RS{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS[WY]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRYYAW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRYYAW;[{M(Oxidation (M))|F}E][KG]RS{M(Oxidation (M))|F}YW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS[WY]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}[DP][HK]YW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[DP][HK]YW 6.658;6.5322;5.1076;4.6273;4.1666;4.0409;4.0327;3.6809;3.3324;3.2067 -;+;-;-;-;-;-;-;-;- + 967 NaN NaN 144513 NaN 13593 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17008 71.975 NaN 446210 35 0 91476 0.261 + 9495 HPYFYAPELL 10 66 625.3157442450099 1248.6169355568197 2 625.3164672851562 MULTI HCD FTMS 0 0 0 17003 280974.0625 0.9529771732842442 1 -0.0260162353515625 5 Unmodified _HPYFYAPELL_ CON__P02768-1;CON__P02769;ENSG00000163631|ENST00000295897|ALB 52.268347100219714 0.06954005568441465 1 YYA{M(Oxidation (M))|F}YA 6 7 54.442 0 0 4.3602 0 0 0 467.2513168083105 467.2513168083105 28.47295930833134 0 0 0 0 1.3807196863200843 2 0 0 YYA{M(Oxidation (M))|F}YA 4.3602 - 113 + NaN NaN 160977.2 NaN 13594 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17009 71.979 NaN 365150 35 0 43031 0.261 + 26749 SYEYRFLEF 9 78 627.2956702732074 1252.5767876132147 2 627.2958984375 MULTI HCD FTMS 0 0 0 17003 187337.03125 0.22410521801453376 7 -0.19599151611328125 6 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 47.7319792270244 0.034743597693959835 1 {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 9 0 + 54.319 0 0 4.3366 4.3366 89.314 0 0 0 4.137342758552691 37.57565264836895 4.137342758552691 33.253800256993955 0 1.8979400086720375 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}][HN]R[{M(Oxidation (M))|F}T]E{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}][HN]RYE[MT];[R{M(Oxidation (M))|F}][HN]Q{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]R[HN][{M(Oxidation (M))|F}T]E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}E{[WT]|[RM]}[NP]{I|L}P{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]R[HN]YE[MT] 4.3366;1.6818;1.4414;1.3427;1.2826;1.1315;1.0423 +;-;-;-;-;-;- + 331 NaN NaN 139384.2 NaN 13595 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17010 71.982 NaN 404460 35 0 35126 0.261 + 35488 YYFKANVFF 9 69 599.8011473917159 NaN 0 599.80078125 PEAK HCD FTMS 0 0 0 17003 134131.6875 0.9553104164485035 1 -0.0260162353515625 7 Unmodified _YYFKANVFF_ ENSG00000111229|ENST00000228825|ARPC3 42.09456458481378 0.07155800144855468 1 {M(Oxidation (M))|F}V 2 7 14.464 0 0 1.2078 0 0 165.07991483779875 783.3445712078221 948.4244860456208 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}V 1.2078 - 119 + NaN NaN 140866.2 NaN 13596 3412 17003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17012 71.987 NaN 17768000 35 0 2820600 0.327 + 6141 FPEHIFPAL 9 117 535.7874980933541 1069.560443253508 2 535.7877807617188 MULTI HCD FTMS 0 0 0 17011 11761232 0.8134265503662318 2 -0.0421905517578125 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 117.59872219059416 0.0017018906413822257 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 76.446 0 0 7.1474 7.1474 88.792 0 0 0 17.06620659682222 26.648904577930125 17.06620659682222 8.066884185923655 0 2.192323921596858 1.3010299956639813 0.8481362441963329 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L};[EP]H{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}A{M(Oxidation (M))|F}P{I|L} 7.1474;6.3932;5.8726;5.6812;5.3092;5.2565;5.0438;5.0355;4.7911;4.7463 +;-;-;-;-;-;-;-;-;- + 9383 NaN NaN 1108101.9 NaN 13597 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17013 71.991 NaN 974900 35 0 65977 0.261 + 13184 KYLTEGLLQF 10 101 606.3372036148426 1210.659854296485 2 606.3375854492188 MULTI HCD FTMS 0 0 0 17011 533159 0.11008641064377112 11 -0.31514739990234375 2 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 66.68293810318366 0.021515761494065467 1 TAEV{I|L}Q{M(Oxidation (M))|F} 7 6 82.467 0 0 6.8117 0 0 404.242625695128 0 404.242625695128 0 70.55539484601134 0 0 0 1.774227503252014 0 1.4247425010840047 0 TAEV{I|L}Q{M(Oxidation (M))|F} 6.8117 - 2386 NaN NaN 231888.9 NaN 13598 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17014 71.995 NaN 534130 35 0 70452 0.264 + 12864 KYFLWVVKF 9 70 410.5741020407836 1228.7004767225508 3 410.57391357421875 MULTI HCD FTMS 0 0 0 17011 161151.1875 0.7201906994162389 -3 0.081329345703125 3 Unmodified _KYFLWVVKF_ ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2 43.981846655682396 0.04706587046877104 1 NWVVK{M(Oxidation (M))|F} 6 4 54.87 0 0 4.4657 0 0 437.26309900081895 0 437.26309900081895 0 50.89062518744797 0 0 0 2 0 0 0 NWVVK{M(Oxidation (M))|F} 4.4657 - 335 + NaN NaN 162270.7 NaN 13599 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17015 71.998 NaN 439310 35 0 60183 0.261 + 4421 EYGFISQTL 9 60 529.2641307276965 1056.513708522193 2 529.2637939453125 MULTI HCD FTMS 0 0 0 17011 177827.15625 0.6673738995981778 -2 0.04871368408203125 4 Unmodified _EYGFISQTL_ ENSG00000057704|ENST00000261226|TMCC3 63.960520009940105 0.0120409805053046 1 {I|L}SQT{I|L} 5 4 57.691 0 0 5.4605 0 0 496.19536025215 0 496.19536025215 0 42.2062251842808 0 0 0 1.8494850021680094 0 0.4247425010840047 0 + {I|L}SQT{I|L} 5.4605 + + 156 NaN NaN 150528.6 NaN 13600 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17016 72.001 NaN 172870 35 0 21637 0.261 + 32931 YAHIYRCLQ 9 71 583.7900273697056 1165.5655018062112 2 584.2903442382812 MULTI HCD FTMS 0 0 0 17011 90012.328125 1 0 0 5 Unmodified _YAHIYRCLQ_ NPY4R|p.R236H|1|0.6|ENSG00000204174|chr10:46461929-46461929|C/T|missense_variant 7.910154910731844 0.2910521888787154 1 YK{M(Oxidation (M))|F} 3 8 21.682 0 0 1.8603 0 0 709.3273864271081 0 709.3273864271081 0 10.880456295278407 0 0 0 0 0 0 0 YK{M(Oxidation (M))|F} 1.8603 - 273 + NaN NaN 100714.3 NaN 13601 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17017 72.005 NaN 327250 35 0 38071 0.261 -1 FPIEAGDMF 9 60 521.7312459008294 1041.4479388684588 2 521.7310791015625 MULTI HCD FTMS 0 0 0 17011 58108.83203125 0.2633982351515914 20 -0.587432861328125 6 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 30.636539890814138 0.10832830463492794 1 ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 43.487 0 0 4.1756 0 0 357.2052479474625 0 357.2052479474625 0 29.33053210369387 0 0 0 1.6989700043360187 0 0 0 ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1756 - 274 NaN NaN 130878.8 NaN 13602 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17018 72.008 NaN 224920 35 0 30354 0.261 + -1 DYCENRPF 8 61 550.7273553117072 1099.4401576902144 2 550.7271728515625 MULTI HCD FTMS 0 0 0 17011 66759.1953125 0.701264597203436 -2 0.04871368408203125 7 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))ENRPF_ REV__nc|ENSG00000148459|Q5T2R2-2|PDSS1 4.75600775471527 0.5349361699807423 1 DQC[MT]NY 7 -1 16.163 0 0 1.4701 0 0 0 241.15529810123283 241.15529810123283 0.6787321967485838 0 0 0 0 0 0 0 0 DQC[MT]NY 1.4701 - 80 + NaN NaN 114459.3 NaN 13603 3413 17011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17020 72.013 NaN 1256200 35 0 132300 0.327 + 13275 KYMDINFDF 9 92 596.7710756229087 1191.5275983126173 2 596.7711791992188 MULTI HCD FTMS 0 0 0 17019 689503.875 0.28709922012089956 7 -0.203857421875 1 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 117.83759599426817 0.001662893820975323 1 [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 89.294 0 0 7.494 7.494 88.79 0 0 0 3.2568864632742844 57.204999916446795 3.2568864632742844 6.689615513722202 0 2.7302046884880937 0 0.6307196863200843 1.1861818737241734 + + [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[VS]{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.494;6.9326;6.7212;6.1598;5.9274;5.8606;5.366;5.2821;5.1546;4.9175 +;-;-;-;-;-;-;-;-;- + 4329 NaN NaN 293152.2 NaN 13604 3414 17019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17021 72.017 NaN 866220 35 0 138040 0.263 + 15942 LPPGEWEL 8 69 470.74243466578787 939.4703163983758 2 470.74237060546875 MULTI HCD FTMS 0 0 0 17019 351492 0.7933566436525933 1 -0.01617431640625 2 Unmodified _LPPGEWEL_ ENSG00000163362|ENST00000413687|INAVA;ENST00000487626.1_1_3:111904329-111904731:-|nuORF;nc|ENSG00000163362|Q3KP66|INAVA 53.57557251787612 0.1056313556323 1 EWE{I|L} 4 4 47.097 0 0 5.0131 0 0 364.21040541816564 0 364.21040541816564 0 29.512043052572494 0 0 0 1.1549471895720984 0 0.5994850021680094 0 + EWE{I|L} 5.0131 + + 545 NaN NaN 215058.9 NaN 13605 3414 17019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17022 72.021 NaN 224620 35 0 24544 0.261 + 12386 KPFEAFLSF 9 61 543.2872883057393 1084.5600236782784 2 543.2879638671875 MULTI HCD FTMS 0 0 0 17019 48885.1640625 0.4228888154634289 1 -0.01617431640625 3 Unmodified _KPFEAFLSF_ ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 18.1463463914782 0.20357593197100715 1 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 4 7 40.165 0 0 3.7033 0 0 572.2951694219943 0 572.2951694219943 0 32.99803764475705 0 0 0 1 0 0.4247425010840047 0 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 3.7033 - 54 NaN NaN 124391.6 NaN 13606 3414 17019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17023 72.024 NaN 177320 35 0 7369 0.263 + 23251 RGLLCPAL 8 80 421.75136438601817 NaN 0 421.7514953613281 PEAK HCD FTMS 0 0 0 17019 62624.84765625 0.6058347332336756 15 -0.44338226318359375 4 Unmodified _RGLLCPAL_ UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant 2.577480529830294 0.38822285293237185 1 V 1 8 6.9897 0 0 0.83064 0 0 350.17769590551063 389.21894320940845 739.396639114919 0 0 0 0 0 0 0 0 0 V 0.83064 - 9 + NaN NaN 112198.5 NaN 13607 3414 17019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17025 72.029 NaN 4891200 35 0 1730700 0.327 + 8400 GYPLWKVTF 9 119 555.8026984757278 1109.5908440182554 2 555.802734375 MULTI HCD FTMS 0 0 0 17024 2454335 0.5660116064971292 -3 0.068206787109375 1 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 86.33184430468982 0.004622086694044132 1 GYP{I|L}WKVT{M(Oxidation (M))|F} 9 0 + 112.71 0 0 10.157 10.157 95.777 0 0 0 13.144490976677048 13.144490976677048 13.144490976677048 13.144490976677048 0 3.1861818737241734 2 0.7302046884880937 0 + + GYP{I|L}WKVT{M(Oxidation (M))|F};[YG]P{I|L}WKVT{M(Oxidation (M))|F};[YG]P{I|L}W{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VSWKVT{M(Oxidation (M))|F};[{I|L}P]GYWKVT{M(Oxidation (M))|F};G[{I|L}P]YWKVT{M(Oxidation (M))|F};[YG]P{I|L}W[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]};[{I|L}P]W[YG]KVT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VSW{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};[{I|L}P]GYW{[TV]|[{I|L}S]}K{M(Oxidation (M))|F} 10.157;8.9728;6.6761;6.4765;6.1541;5.669;5.0805;4.5551;4.1798;3.8573 +;+;-;-;-;-;-;-;-;- + 2947 + NaN NaN 830678.9 NaN 13608 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17026 72.033 NaN 1158400 35 0 96835 0.261 + 19751 NYAWVYYHL 9 106 614.7929287250602 1227.5713045169202 2 614.7930908203125 MULTI HCD FTMS 0 0 0 17024 457351.96875 0.00815096126125972 104 -2.8991928100585938 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 100.57 0 0 8.1926 8.1926 95.448 0 0 0 30.300084529637985 16.478174818886373 16.478174818886373 26.510908287781277 0 2.25 1.6989700043360187 0 1.947621246364342 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};NYAWVYYH{I|L};NYAWVWD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};N[HV]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYA[KC]QQN{M(Oxidation (M))|F}{I|L};NYA[WP]{[CT]|[{M(Oxidation (M))|F}G]}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]H{[MS]|[{M(Oxidation (M))|F}A]}YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}V[HA]YH{I|L} 8.1926;6.033;5.7243;4.6097;3.7433;3.5988;3.3859;2.9641;2.5525;2.4507 +;-;+;-;-;-;-;-;-;- + 2863 NaN NaN 259623.2 NaN 13609 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17027 72.037 NaN 393040 35 0 63417 0.261 + 4848 FAALVLCPTEL 11 75 588.8191941319922 1175.6238353307842 2 588.8184814453125 MULTI HCD FTMS 0 0 0 17024 198442.234375 0.9836774624887035 2 -0.058807373046875 3 Unmodified _FAALVLCPTEL_ ENSG00000102743|ENST00000338625|SLC25A15 34.40172386719151 0.17300472122796048 1 {M(Oxidation (M))|F}{I|L}[EP]PTE{I|L} 8 5 53.677 0 0 4.5659 0 0 231.1222401349625 0 231.1222401349625 0 28.015384402724592 0 0 0 1.2302046884880937 0 1.2614393726401687 0 {M(Oxidation (M))|F}{I|L}[EP]PTE{I|L} 4.5659 - 863 NaN NaN 139180.7 NaN 13610 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17028 72.04 NaN 569330 35 0 48006 0.261 + -1 VSADMRVVTM 10 80 562.773898476103 NaN 0 562.7924194335938 PEAK HCD FTMS 0 0 0 17024 12709.501953125 1 0 0 4 Oxidation (M) _VSADMRVVTM(Oxidation (M))_ REV__ENSG00000072422|ENST00000337910|RHOBTB1 11.494710602746466 0.33034640988000663 1 P{I|L}WKVT 6 -1 27.868 0 0 2.4804 0 0 234.02700045675505 162.05622278385002 396.0832232406051 0 0 0 0 0 0 0 0.2742275032520141 0 P{I|L}WKVT 2.4804 - 240 + NaN NaN 161472.2 NaN 13611 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17029 72.043 NaN 106620 35 0 10612 0.261 + -1 VTCVIFLSF 9 46 543.2872883057393 1084.5600236782784 2 543.2864990234375 MULTI HCD FTMS 0 0 0 17024 58503.48828125 0.5060936448552276 2 -0.058807373046875 5 Carbamidomethyl (C) _VTC(Carbamidomethyl (C))VIFLSF_ REV__ENSG00000187554|ENST00000642603|TLR5 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 4 -1 41.414 0 0 3.8185 0 0 572.2950254137492 0 572.2950254137492 0 34.42471268044436 0 0 0 1 0 0.4247425010840047 0 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 3.8185 - 9 NaN NaN 96035.6 NaN 13612 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17030 72.047 NaN 163460 35 0 9135.8 0.261 + 7050 FQFFFIRI 8 70 559.3110681057843 1116.6075832783686 2 559.3103637695312 MULTI HCD FTMS 0 0 0 17024 92549.7421875 0.8700185161466204 -1 0.01617431640625 6 Unmodified _FQFFFIRI_ REV__ENST00000342374.4_1_20:43127230-43127344:-|nuORF 12.531546534597751 0.5015908124873912 1 WP{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.3462 0 0 0 683.3850337663741 683.3850337663741 5.228787452803374 0 0 0 0 0 0 0 0 WP{M(Oxidation (M))|F} 2.3462 - 118 + NaN NaN 106793.9 NaN 13613 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17031 72.05 NaN 162690 35 0 17341 0.261 -1 0 60 513.7805877214055 1025.5466225096109 2 513.7807006835938 MULTI HCD FTMS 0 0 0 17024 16535.322265625 0.15228089524582594 12 -0.37157440185546875 7 NaN NaN 1 P{I|L}{I|L} 3 -1 23.416 0 0 2.2833 0 0 684.3143444963949 0 684.3143444963949 0 6.180993120779945 0 0 0 0.5 0 0 0 P{I|L}{I|L} 2.2833 - 105 NaN NaN 104794.5 NaN 13614 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17032 72.053 NaN 174050 35 0 16602 0.261 -1 0 59 511.2549282412626 1020.4953035493252 2 511.2543029785156 MULTI HCD FTMS 0 0 0 17024 68224.484375 0.08700624519224293 -27 0.7437210083007812 8 NaN NaN 1 Q{I|L} 2 -1 19.464 0 0 1.9073 0 0 761.3228016584 0 761.3228016584 0 14.859856381998782 0 0 0 0 0 0 0 Q{I|L} 1.9073 - 68 NaN NaN 106873.6 NaN 13615 3415 17024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17034 72.058 NaN 1701600 35 0 141290 0.327 + 21540 PYLGKYKAGF 10 118 572.3137229209694 1142.6128929087388 2 572.3260498046875 MULTI HCD FTMS 0 0 0 17033 64018.99609375 0.8183114252988117 4 -0.13130950927734375 1 Unmodified _PYLGKYKAGF_ ENSG00000138356|ENST00000374700|AOX1 12.531546534597751 0.39389615866941496 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 8 7 52.074 0 0 4.5574 0 0 0 128.0458620749486 128.0458620749486 -0.3661739942886797 0 -0.3661739942886797 0 0 0 2 0.8609243748081783 0.23965182871044374 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 4.5574 - 2067 NaN NaN 339879.8 NaN 13616 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17035 72.063 NaN 528300 35 0 83879 0.262 -1 MPDLDLNL 8 58 473.73125752503404 945.4479621168681 2 473.7310791015625 MULTI HCD FTMS 0 0 0 17033 366088.15625 0.6794166381034735 5 -0.1583251953125 2 Oxidation (M) _M(Oxidation (M))PDLDLNL_ ENSG00000124942|ENST00000378024|AHNAK 67.34385681178166 0.03276080048072826 1 D{I|L}N{I|L} 4 -1 48.844 0 0 5.1663 0 0 472.19990737129064 0 472.19990737129064 0 27.40417829939986 0 0 0 0.8494850021680094 0 0.6989700043360187 0.3807196863200844 D{I|L}N{I|L} 5.1663 + + 71 NaN NaN 165605 NaN 13617 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17036 72.066 NaN 613310 35 0 121200 0.261 + 23458 RLPSSWALF 9 88 538.7976616177166 1075.580770302233 2 538.7974243164062 MULTI HCD FTMS 0 0 0 17033 257325.9375 0.7189866746437364 4 -0.13130950927734375 3 Unmodified _RLPSSWALF_ ENSG00000129636|ENST00000320640|ITFG1 29.081581746732265 0.1154664336125038 1 A{I|L}{M(Oxidation (M))|F} 3 6 36.867 0 0 3.4276 0 0 726.3819442775061 0 726.3819442775061 0 30.41325298820567 0 0 0 1.305462187404089 0 0 0 + A{I|L}{M(Oxidation (M))|F} 3.4276 + + 85 NaN NaN 188845.3 NaN 13618 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17037 72.07 NaN 202640 35 0 18520 0.261 + 35361 YYATVNEL 8 52 486.7375450386057 971.4605371440114 2 486.7372131347656 MULTI HCD FTMS 0 0 0 17033 91198.15625 0.8343151042632652 1 -0.029449462890625 4 Unmodified _YYATVNEL_ ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;PCDH15|p.I385Tfs*32|1|0.2|ENSG00000150275|chr10:54195822-54195834|TTTTCATCCAGTA/-|frameshift_variant 23.1484247019978 0.4234759064137959 1 E{[MS]|[{M(Oxidation (M))|F}A]}[QT]V{M(Oxidation (M))|F} 7 6 24.314 0 0 2.5028 0 0 131.09516585345642 0 131.09516585345642 0 10.044366014821087 0 0 0 0.3494850021680094 0 0.7614393726401688 0.3494850021680094 E{[MS]|[{M(Oxidation (M))|F}A]}[QT]V{M(Oxidation (M))|F} 2.5028 - 44 + NaN NaN 110687.2 NaN 13619 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17038 72.073 NaN 271360 35 0 21164 0.261 + 32639 WLYSVPWGF 9 80 577.7860767409635 1153.557600548727 2 577.7847900390625 MULTI HCD FTMS 0 0 0 17033 74017.5703125 0.2783738470148789 5 -0.1583251953125 5 Unmodified _WLYSVPWGF_ ENSG00000188501|ENST00000695545|LCTL;nc|ENSG00000188501|Q6UWM7-2|LCTL 11.640296217721598 0.25978676193971967 1 {I|L}EWG{M(Oxidation (M))|F} 5 5 43.315 0 0 3.7549 0 0 503.2408619611344 0 503.2408619611344 0 22.680606357151518 0 0 0 0.9247425010840047 0 0 0 {I|L}EWG{M(Oxidation (M))|F} 3.7549 - 853 NaN NaN 126636.8 NaN 13620 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17039 72.076 NaN 161970 35 0 19345 0.261 + 12425 KPPAIIRIKLM 11 49 640.4171529911675 NaN 0 640.282958984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KPPAIIRIKLM_ REV__ENSG00000196834|ENST00000451531|POTEI 0.35063188157827746 0.3411255017974031 1 V 1 -1 6.9897 0 0 0.54657 0 0 132.3162204146832 1044.4097125352293 1176.7259329499125 0 0 0 0 0 0 0 0 0 V 0.54657 - 12 + NaN NaN 102848.1 NaN 13621 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17040 72.079 NaN 582100 35 0 93734 0.261 + 13939 KYQYWAVVF 9 61 602.3136879258864 1202.6128229185726 2 602.3153076171875 MULTI HCD FTMS 0 0 0 17033 166560.6875 0.061444735703602676 -5 0.12026214599609375 7 Unmodified _KYQYWAVVF_ ENSG00000135845|ENST00000344529|PIGC;PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant 57.47134341890925 0.0211188941628804 1 [YQ]KYWAVV{M(Oxidation (M))|F} 9 2 + 74.486 0 0 6.1937 6.1937 93.196 0 0 0 3.65279269351241 65.18954998148708 3.65279269351241 53.86114718206791 0 2.305462187404089 0 0 0.3807196863200844 [YQ]KYWAVV{M(Oxidation (M))|F};[RH]V[CS]WR{I|L}{M(Oxidation (M))|F};VVAWY[YG]AK{M(Oxidation (M))|F};VVAWY[YQ]K{M(Oxidation (M))|F};[RH]AP[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]R{I|L}{M(Oxidation (M))|F} 6.1937;1.715;1.504;1.4615;1.1954 -;-;-;-;- 674 NaN NaN 177859.8 NaN 13622 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17041 72.083 NaN 170500 35 0 34959 0.264 + 35115 YVDTTADL 8 57 449.213071463796 896.411589994392 2 449.2127685546875 MULTI HCD FTMS 0 0 0 17033 9242.67578125 0.15374168719533904 1 -0.029449462890625 8 Unmodified _YVDTTADL_ ENSG00000249481|ENST00000674044|SPATS1 10.183394434864962 0.5188676124868831 1 W 1 8 13.495 0 0 1.5054 0 0 692.3221562559139 0 692.3221562559139 0 -7.719932023307834 -7.719932023307834 0 0 0 0 0 0 W 1.5054 - 18 + NaN NaN 111688.7 NaN 13623 3416 17033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17043 72.088 NaN 2782400 35 0 377930 0.327 -1 PDGSSKGC 8 81 404.16961921983085 806.3246855064617 2 404.17010498046875 MULTI HCD FTMS 0 0 0 17042 2938719 0.2852516798115975 6 -0.18798065185546875 1 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.15445461462826 0 449.15445461462826 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 20 NaN NaN 427964.8 NaN 13624 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17044 72.092 NaN 1644700 35 0 312440 0.261 + 12684 KWLLYPTEI 9 94 581.8290784894222 1161.6436040456442 2 581.8291625976562 MULTI HCD FTMS 0 0 0 17042 657014.25 0.47024280231433885 2 -0.06897735595703125 2 Unmodified _KWLLYPTEI_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 82.5293158979368 0.005033931517079822 1 [W{I|L}]K{I|L}YPTE{I|L} 9 2 + 60.429 0 0 5.202 5.202 91.725 0 0 0 1.0822685886482475 20.866968715561633 1.0822685886482475 60.42850632646001 0 2.110924374808178 0 0.4247425010840047 0 [W{I|L}]K{I|L}YPTE{I|L} 5.202 - 1345 NaN NaN 333925.1 NaN 13625 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17045 72.096 NaN 422780 35 0 38085 0.262 + 30727 VPINVVETL 9 55 492.292338565226 982.570124197252 2 492.2923583984375 MULTI HCD FTMS 0 0 0 17042 207221.484375 0.20131540622702748 6 -0.18798065185546875 3 Unmodified _VPINVVETL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 88.95385435242217 0.004553379958619559 1 [VP]{I|L}NVVET{I|L} 9 0 + 66.137 0 0 6.731 6.731 91.095 0 0 0 3.65279269351241 9.252509456924827 3.65279269351241 12.95880017344075 0 2 0 0.3807196863200844 0.4247425010840047 + + [VP]{I|L}NVVET{I|L};[VP]P[KT]VET{I|L};[VP]{I|L}GGVVET{I|L};[{I|L}T]EV{[NV]|[RG]}{I|L}PV;[{I|L}T]EV{[NV]|[RG]}[VP]{I|L} 6.731;5.4121;5.3616;4.5136;3.8353 +;-;-;-;- + 147 NaN NaN 138549.4 NaN 13626 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17046 72.099 NaN 471890 35 0 105350 0.261 + 17241 LYPEGLAQL 9 64 502.27734891351014 1002.5401448938203 2 502.2774658203125 MULTI HCD FTMS 0 0 0 17042 213984.53125 0.19949238220795532 12 -0.36840057373046875 4 Unmodified _LYPEGLAQL_ ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF 43.85829265575387 0.04763305254408404 1 {I|L}TA{I|L} 4 6 46.67 0 0 4.6552 0 0 586.2788563459 0 586.2788563459 0 25.1869160710703 0 0 0 1.3494850021680094 0 0.4247425010840047 0 {I|L}TA{I|L} 4.6552 - 229 NaN NaN 164036.9 NaN 13627 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17047 72.102 NaN 327860 35 0 28867 0.261 + 7333 FVAPSDIQL 9 71 495.2690550535314 988.5235571738629 2 495.26898193359375 MULTI HCD FTMS 0 0 0 17042 91595.828125 0.8038781371979861 -1 0.029449462890625 5 Unmodified _FVAPSDIQL_ ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant 56.17704186161178 0.022929533404884107 1 {I|L}Q{I|L} 3 6 33.817 0 0 3.421 0 0 616.2870269907673 0 616.2870269907673 0 14.112117642281827 0 0 0 0.9247425010840047 0 0 0.28872548999643577 + {I|L}Q{I|L} 3.421 + + 125 NaN NaN 123442.8 NaN 13628 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17048 72.106 NaN 175170 35 0 10211 0.261 -1 QYQIIMTMI 9 71 586.7897642615401 1171.56497558988 2 586.7914428710938 MULTI HCD FTMS 0 0 0 17042 77455.4765625 0.27351630873552674 7 -0.21414947509765625 6 2 Oxidation (M) _QYQIIM(Oxidation (M))TM(Oxidation (M))I_ ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2 22.736283301280096 0.1639198954644489 1 WG{M(Oxidation (M))|F} 3 -1 34.693 0 0 2.9612 0 0 763.3886585919937 0 763.3886585919937 0 14.114459258636813 0 0 0 1 0 0 0 WG{M(Oxidation (M))|F} 2.9612 - 108 NaN NaN 103601.3 NaN 13629 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17049 72.109 NaN 338500 35 0 34240 0.262 + 2618 DVAFTDPTL 9 57 489.7426576045049 977.4707622758099 2 489.7424621582031 MULTI HCD FTMS 0 0 0 17042 79030.078125 0.44702131177865595 -2 0.058807373046875 7 Unmodified _DVAFTDPTL_ ENSG00000151689|ENST00000392329|INPP1 74.92900055777586 0.007493270374442853 1 [DV]A{M(Oxidation (M))|F}TD 6 3 66.916 0 0 6.8459 0 0 0 326.1719671456981 326.1719671456981 50.88554074136319 0 0 0 0 1.9247425010840047 1.6989700043360187 1.305462187404089 0 + [DV]A{M(Oxidation (M))|F}TD 6.8459 + + 223 + NaN NaN 146794 NaN 13630 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17050 72.112 NaN 112950 35 0 20686 0.261 + -1 LPCWGCKV 8 34 481.73359898942766 961.4526450456553 2 481.73333740234375 MULTI HCD FTMS 0 0 0 17042 31597.814453125 0.3409469984127435 2 -0.06897735595703125 8 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))WGCKV_ REV__ENST00000200691.4_1_16:56624919-56624976:+|nuORF 9.347437153973935 0.5250182646323369 1 {I|L}P 2 -1 42.959 0 0 4.4681 0 0 0 748.2929362639392 748.2929362639392 37.89713149807213 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}P 4.4681 + + 6 + NaN NaN 93813.3 NaN 13631 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17051 72.116 NaN 287750 35 0 44650 0.261 -1 FPIEAGDMF 9 58 521.7312459008294 1041.4479388684588 2 521.731689453125 MULTI HCD FTMS 0 0 0 17042 34960.51171875 0.15847052444218934 24 -0.70159912109375 9 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}KEA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 32.049 0 0 3.0774 0 0 82.01075192589094 0 82.01075192589094 0 32.049275299015605 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}KEA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0774 - 61 + NaN NaN 132217.9 NaN 13632 3417 17042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17053 72.121 NaN 1731800 35 0 423840 0.327 -1 YPQKHMRLF 9 88 618.3213634677372 1234.6281740022744 2 618.3211059570312 MULTI HCD FTMS 0 0 0 17052 870996.25 0.14876906731043585 11 -0.33560943603515625 1 Oxidation (M) _YPQKHM(Oxidation (M))RLF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 7.289230182591677 0.29575926068275815 1 YYPEY 5 -1 66.983 0 0 5.4253 0 0 0 516.3189180963499 516.3189180963499 38.57840941039747 0 0 0 0 1.6549471895720984 2 0 0 YYPEY 5.4253 - 381 + NaN NaN 349787.8 NaN 13633 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17054 72.125 NaN 616030 35 0 112320 0.262 + 16105 LPTEAEFQL 9 62 524.2717353896322 1046.5289178460644 2 524.271728515625 MULTI HCD FTMS 0 0 0 17052 361484.4375 0.1376520508991798 7 -0.2141876220703125 2 Unmodified _LPTEAEFQL_ ENSG00000183508|ENST00000369448|TENT5C 53.832793166522166 0.026208976789938845 1 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[Q{I|L}]{M(Oxidation (M))|F} 7 8 54.028 0 0 5.1626 0 0 131.0940671697685 0 131.0940671697685 0 39.75899433273387 0 0 0 0.3807196863200844 0 1.0752574989159953 0.7742275032520141 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[Q{I|L}]{M(Oxidation (M))|F} 5.1626 - 344 + NaN NaN 177790.2 NaN 13634 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17055 72.129 NaN 1695500 35 0 246840 0.261 + 13940 KYQYWAVVF 9 85 602.3136879258864 1202.6128229185726 2 602.3136596679688 MULTI HCD FTMS 0 0 0 17052 880734.4375 0.32490556775138596 -3 0.0915985107421875 3 Unmodified _KYQYWAVVF_ ENSG00000135845|ENST00000344529|PIGC;PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant 77.98433622928108 0.006504613272346738 1 [YQ]KYWAVV{M(Oxidation (M))|F} 9 2 + 84.633 0 0 7.0374 7.0374 91.61 0 0 0 6.637342758552691 52.871629803114374 6.637342758552691 12.742727328383694 0 2.3494850021680094 0 0 1.2544321917401078 [YQ]KYWAVV{M(Oxidation (M))|F};[YQ]YKWAVV{M(Oxidation (M))|F};VVAWY[YQ]K{M(Oxidation (M))|F};VVAWY[YG]AK{M(Oxidation (M))|F};VVAWY[YQ]{M(Oxidation (M))|F}K;VVAWY[YG]A{M(Oxidation (M))|F}K;[RH]V[CS]WR{I|L}{M(Oxidation (M))|F} 7.0374;5.9778;2.457;2.2715;1.5193;1.3338;0.69209 -;-;-;-;-;-;- 1482 NaN NaN 347110.6 NaN 13635 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17056 72.132 NaN 917150 35 0 90096 0.261 + 32876 WYGYHFPEL 9 105 606.2801456544437 1210.5457383756873 2 606.2799682617188 MULTI HCD FTMS 0 0 0 17052 212407.078125 0.7945196360256265 1 -0.03618621826171875 4 Unmodified _WYGYHFPEL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 67.34385681178166 0.00994769994983633 1 [WY]GYH{M(Oxidation (M))|F}PE{I|L} 9 0 + 50.006 0 0 4.1308 4.1308 86.803 0 0 0 8.30940741508558 8.094399836060767 8.094399836060767 13.298247204937667 0 1.6237125054200234 2 0 0 + + [WY]GYH{M(Oxidation (M))|F}PE{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}MYH{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}D{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}PE{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}YH{M(Oxidation (M))|F}PE{I|L};WY[W{I|L}]RM{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{M(Oxidation (M))|F}E]D{I|L}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}PE{I|L};[{M(Oxidation (M))|F}E]{I|L}D{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}PE{I|L};WY[W{I|L}][VG]M{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};W[W{M(Oxidation (M))|F}]DAV{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};W[W{M(Oxidation (M))|F}]GEV{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4.1308;3.0323;2.9899;2.9522;2.6185;1.9468;1.8915;1.8533;1.6068;1.6068 +;-;-;-;-;-;-;-;-;- + 1921 NaN NaN 221951.6 NaN 13636 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17057 72.135 NaN 394030 35 0 50573 0.262 + 18119 MPDFDLHL 8 78 494.23385529338344 986.4531576535669 2 494.23370361328125 MULTI HCD FTMS 0 0 0 17052 147650.953125 0.1071379543730588 13 -0.397918701171875 5 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 60.38955033654506 0.06344887527228933 1 MPD 3 5 44.2 0 0 4.4807 0 0 0 640.3101370269263 640.3101370269263 9.16264035428867 0 0 0 0 0.5994850021680094 1.0457574905606752 0.3054621874040891 0 + MPD 4.4807 + + 272 + NaN NaN 142267 NaN 13637 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17058 72.139 NaN 579110 35 0 72319 0.261 -1 0 95 622.2948358044622 1242.5751186757243 2 622.2950439453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 NAHNS{I|L}{M(Oxidation (M))|F} 7 -1 41.317 0 0 3.3251 0 0 441.22654921699376 0 441.22654921699376 0 3.4500758084154626 0 0 0 1.1989700043360187 0 0.7614393726401688 0.3252574989159953 NAHNS{I|L}{M(Oxidation (M))|F} 3.3251 - 2612 NaN NaN 187045.8 NaN 13638 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17059 72.142 NaN 235180 35 0 27937 0.261 + 9496 HPYFYAPELL 10 56 625.3157442450099 1248.6169355568197 2 625.3154907226562 MULTI HCD FTMS 0 0 0 17052 45604.14453125 0.15467516239310078 7 -0.2141876220703125 7 Unmodified _HPYFYAPELL_ CON__P02768-1;CON__P02769;ENSG00000163631|ENST00000295897|ALB 13.90604991867851 0.3810395177745597 1 A[EP]{I|L}{I|L} 5 5 21.972 0 0 1.7597 0 0 707.3090077130875 0 707.3090077130875 0 14.982697339452464 0 0 0 1 0 0 0 + A[EP]{I|L}{I|L} 1.7597 + + 23 NaN NaN 135615.3 NaN 13639 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17060 72.145 NaN 591560 35 0 59234 0.261 + 3054 EAFVWEPAM 9 101 548.2448198099866 1094.475086686773 2 548.244384765625 MULTI HCD FTMS 0 0 0 17052 61531.5546875 0.173272924536803 -6 0.1598052978515625 8 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 74.42276476219924 0.007657080072768255 1 {I|L}WEPA{M(Oxidation (M))|F} 6 4 44.117 0 0 4.0309 0 0 333.13620071406234 0 333.13620071406234 0 29.20310309343897 0 0 0 1.2302046884880937 0 0.6109243748081782 0 {I|L}WEPA{M(Oxidation (M))|F} 4.0309 - 1324 + NaN NaN 175211.8 NaN 13640 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17061 72.148 NaN 192320 35 0 24313 0.261 + 11996 KGAAVYFLF 9 53 508.28462168894964 1014.5546904446993 2 508.28411865234375 MULTI HCD FTMS 0 0 0 17052 43968.59765625 0.1046712418895315 11 -0.33560943603515625 9 Unmodified _KGAAVYFLF_ ENST00000394464.6_1_5:142780416-142782924:-|nuORF 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 30.93 0 0 3.0486 0 0 589.3143788068375 0 589.3143788068375 0 17.11758134947864 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.0486 + + 30 NaN NaN 110195.3 NaN 13641 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17062 72.152 NaN 224340 35 0 40023 0.262 + 8054 GHLGPVTAV 9 46 425.74199315874114 NaN 0 425.7420959472656 PEAK HCD FTMS 0 0 0 17052 87000.1015625 0.7186746843717544 12 -0.361785888671875 10 Unmodified _GHLGPVTAV_ ENSG00000184465|ENST00000448612|WDR27;ENST00000496752.1_1_6:170065563-170070787:-|nuORF;nc|ENSG00000184465|A2RRH5|WDR27 2.0597508629832335 0.2852655770354268 1 Q 1 9 2.4743 0 0 0.29127 0 0 489.29317713603854 229.0974520318969 718.3906291679355 0 0 0 0 0 0 0 0 0 Q 0.29127 - 2 + NaN NaN 126631.1 NaN 13642 3418 17052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17064 72.157 NaN 7527200 35 0 1309400 0.327 + 6142 FPEHIFPAL 9 108 535.7874980933541 1069.560443253508 2 535.7879638671875 MULTI HCD FTMS 0 0 0 17063 4724466.5 0.3267520347711724 8 -0.2437896728515625 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 131.29775728308752 0.0005262696486345744 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 85.341 0 0 7.9791 7.9791 92.097 0 0 0 19.621892823592972 57.42132095814563 19.621892823592972 9.2478773067036 0 2.263632853717045 1.3979400086720375 0.8882104921644451 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EHP{I|L}{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}A{M(Oxidation (M))|F}P{I|L} 7.9791;7.1144;6.9737;6.6178;6.0914;5.9643;5.9523;5.612;5.4746;5.4556 +;-;-;-;-;-;-;-;-;- + 6024 NaN NaN 844797.4 NaN 13643 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17065 72.161 NaN 615590 35 0 64327 0.261 -1 MRFPSGLLKM 10 92 606.3166632214325 NaN 0 606.33740234375 PEAK HCD FTMS 0 0 0 17063 18558.365234375 1 0 0 2 2 Oxidation (M) _M(Oxidation (M))RFPSGLLKM(Oxidation (M))_ ENST00000263642.2_1_2:163133258-163133306:-|nuORF 18.1463463914782 0.29565035219289926 1 Q{I|L}VEAT{I|L} 7 -1 32.67 0 0 2.6986 0 0 165.03861420286222 288.1361178033813 453.1747320062435 0 0 0 0 0 0 0 0.5994850021680094 0 Q{I|L}VEAT{I|L} 2.6986 - 360 + NaN NaN 170837.4 NaN 13644 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17066 72.165 NaN 184570 35 0 22858 0.264 + 12865 KYFLWVVKF 9 49 410.5741020407836 1228.7004767225508 3 410.573974609375 MULTI HCD FTMS 0 0 0 17063 46216.01171875 0.20654108927342318 3 -0.086151123046875 3 Unmodified _KYFLWVVKF_ ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2 21.590151480376914 0.17382222009858564 1 WVVK{M(Oxidation (M))|F} 5 4 43.928 0 0 3.5752 0 0 551.311305026428 0 551.311305026428 0 34.463950151760656 0 0 0 1.5 0 0 0 + WVVK{M(Oxidation (M))|F} 3.5752 + + 62 + NaN NaN 109500.5 NaN 13645 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17067 72.168 NaN 121610 35 0 9223.8 0.261 + 26750 SYEYRFLEF 9 47 627.2956702732074 1252.5767876132147 2 627.2962646484375 MULTI HCD FTMS 0 0 0 17063 82582.46875 0.09879073048136162 14 -0.41745758056640625 4 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 13.042465956692817 0.2476723265019929 1 E{M(Oxidation (M))|F} 2 7 25.217 0 0 2.0132 0 0 958.4527634963498 0 958.4527634963498 0 14.75895023531386 0 0 0 0.4247425010840047 0 0 0 + E{M(Oxidation (M))|F} 2.0132 + + 13 NaN NaN 103383.4 NaN 13646 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17068 72.171 NaN 483970 35 0 143460 0.261 + 7899 FYVPAEPKLAF 11 59 641.3478126951351 1280.68107245707 2 641.3475341796875 MULTI HCD FTMS 0 0 0 17063 162912.359375 0.5210482922590499 -2 0.06897735595703125 5 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 34.221707139014875 0.1741640856101893 1 [Y{M(Oxidation (M))|F}]VPAE 6 5 42.553 0 0 3.3227 0 0 0 571.3251461935374 571.3251461935374 23.08931538997598 0 0 0 0 2.242992819099939 1.5228787452803376 0 0 + [Y{M(Oxidation (M))|F}]VPAE 3.3227 + + 42 NaN NaN 159656.9 NaN 13647 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17069 72.175 NaN 170860 35 0 22620 0.262 + 4422 EYGFISQTL 9 41 529.2641307276965 1056.513708522193 2 529.2640991210938 MULTI HCD FTMS 0 0 0 17063 106706.3515625 0.40046208608343387 4 -0.1190032958984375 6 Unmodified _EYGFISQTL_ ENSG00000057704|ENST00000261226|TMCC3 47.594388314883695 0.03493607795751234 1 {I|L}SQT{I|L} 5 4 52.563 0 0 4.9751 0 0 496.1960621564469 0 496.1960621564469 0 45.57319389984244 0 0 0 1.8494850021680094 0 0 0 + {I|L}SQT{I|L} 4.9751 + + 33 NaN NaN 120172.4 NaN 13648 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17070 72.178 NaN 147550 35 0 9279.8 0.261 + 11720 KCNIFLHYH 9 64 587.7929111810734 NaN 0 587.8104248046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KCNIFLHYH_ REV__ENST00000451834.5_1_7:135047437-135047593:-|nuORF;REV__nc|ENSG00000080802|O95628-6|CNOT4 7.289230182591677 0.2599242500475609 1 T{M(Oxidation (M))|F}{I|L} 3 -1 15.049 0 0 1.2824 0 0 130.0607236299216 679.3106173150999 809.3713409450215 0 0 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F}{I|L} 1.2824 - 252 + NaN NaN 94535.9 NaN 13649 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17071 72.181 NaN 134950 35 0 11842 0.261 + 17101 LYLEQQVQF 9 59 584.3068492396638 NaN 0 584.2894287109375 PEAK HCD FTMS 0 0 0 17063 27683.537109375 0.9038908390469652 3 -0.086151123046875 8 Unmodified _LYLEQQVQF_ ENSG00000130340|ENST00000392185|SNX9 13.90604991867851 0.22786006501039813 1 Q 1 8 10.841 0 0 0.9293 0 0 873.4616466221026 162.05617700748283 1035.5178236295856 0 0 0 0 0 0.4247425010840047 0 0 0.2614393726401688 + Q 0.9293 + + 95 + NaN NaN 113909.4 NaN 13650 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17072 72.185 NaN 297780 35 0 19702 0.261 + 13390 KYPDLANFW 9 82 577.2878342069109 NaN 0 577.2884521484375 PEAK HCD FTMS 0 0 0 17063 76317.4609375 1 0 0 9 Unmodified _KYPDLANFW_ ENSG00000161791|ENST00000335154|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 53.40400417844725 0.037784916695607525 1 {M(Oxidation (M))|F}NA{I|L} 4 8 31.91 0 0 2.7686 0 0 204.09042678408508 500.21640955142817 704.3068363355133 0 0 0 0 0 1.350576203518622 0 0 0.4247425010840047 {M(Oxidation (M))|F}NA{I|L} 2.7686 - 595 + NaN NaN 129023.1 NaN 13651 3419 17063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17074 72.19 NaN 7185100 35 0 2879500 0.327 + 8401 GYPLWKVTF 9 101 555.8026984757278 1109.5908440182554 2 555.802978515625 MULTI HCD FTMS 0 0 0 17073 3393805 0.7826694482163151 2 -0.0532684326171875 1 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 103.35351024395868 0.004027461563756449 1 [YG]P{I|L}WKVT{M(Oxidation (M))|F} 9 0 + 109.69 0 0 9.8856 9.8856 97.869 0 0 0 7.667366974076529 7.667366974076529 7.667366974076529 33.975789105111375 0 3.2302046884880937 2 0.7302046884880937 0.3252574989159953 + + [YG]P{I|L}WKVT{M(Oxidation (M))|F};[YG]P{I|L}W{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};[{I|L}P]GYWKVT{M(Oxidation (M))|F};[YG]P{I|L}T{[RE]|[WV]}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]WKVT{M(Oxidation (M))|F};[{I|L}P]W[YG]KVT{M(Oxidation (M))|F};[YG]P{I|L}W[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]TGRVT{M(Oxidation (M))|F};[{I|L}P]WK[YG]VT{M(Oxidation (M))|F};[{I|L}P]GYW{[TV]|[{I|L}S]}K{M(Oxidation (M))|F} 9.8856;6.8236;6.3115;5.6791;5.677;5.0517;4.9873;4.6912;4.039;3.9405 +;-;-;-;-;-;-;-;-;- + 3433 + NaN NaN 589914.8 NaN 13652 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17075 72.194 NaN 686440 35 0 79759 0.261 + -1 LDCLRTVTF 9 92 562.7932122503262 1123.5718715674523 2 562.7926025390625 MULTI HCD FTMS 0 0 0 17073 318549.46875 0.8170603636251712 1 -0.02701568603515625 2 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))LRTVTF_ REV__nc|ENSG00000105325|Q9UM11-3|FZR1 36.12702656103203 0.08312389501731911 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT{M(Oxidation (M))|F} 9 -1 + 83.326 0 0 7.4161 7.4161 94.273 0 0 0 1.8796177910728318 67.1277502416482 1.8796177910728318 26.99092531119419 0 3.4247425010840047 0 0.6505149978319906 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}W{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[{I|L}P]GY{[CP]|[EA]}KVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}T[NP]VT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[ET]|[MV]}{[CP]|[EA]}KVT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[ES]|[DT]|[{I|L}C]}W[VG]VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][PA]W[VG]VT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}K[C(Carbamidomethyl (C))N][VG]VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}T[WP]K{M(Oxidation (M))|F} 7.4161;5.0139;4.2783;4.0772;3.7044;2.7434;2.7231;2.7231;2.4551;2.1217 -;-;-;-;-;-;-;-;-;- 680 NaN NaN 190277.4 NaN 13653 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17076 72.198 NaN 640190 35 0 110230 0.262 + 15943 LPPGEWEL 8 62 470.74243466578787 939.4703163983758 2 470.7423400878906 MULTI HCD FTMS 0 0 0 17073 269550.125 0.6084046933248466 7 -0.210906982421875 3 Unmodified _LPPGEWEL_ ENSG00000163362|ENST00000413687|INAVA;ENST00000487626.1_1_3:111904329-111904731:-|nuORF;nc|ENSG00000163362|Q3KP66|INAVA 23.1484247019978 0.4234759064137959 1 HWE{I|L} 4 5 34.702 0 0 3.6938 0 0 356.1831227033219 0 356.1831227033219 0 18.504522520566088 0 0 0 0.4247425010840047 0 0.2742275032520141 0 HWE{I|L} 3.6938 - 133 NaN NaN 181664.3 NaN 13654 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17077 72.201 NaN 942160 35 0 90644 0.261 + 19752 NYAWVYYHL 9 91 614.7929287250602 1227.5713045169202 2 614.793212890625 MULTI HCD FTMS 0 0 0 17073 358320.90625 0.0063860222006385005 109 -3.00262451171875 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 1 [YN]AWVYYH{I|L} 9 0 + 111.29 0 0 9.0657 9.0657 96.389 0 0 0 22.6893017848453 16.478174818886373 16.478174818886373 22.6893017848453 0 2.774227503252014 1.6989700043360187 0 2.2733623702246373 + + [YN]AWVYYH{I|L};NYAWVYYH{I|L};NYAWV[WD]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};NYA{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};NS{M(Oxidation (M))|F}WVYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[HT]EVCYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[HT]EVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[KA]{[YC]|[HE]}EVCYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[HT]EVW{[C(Carbamidomethyl (C))G]|[NC]}{I|L};NYA[KC]QQN{M(Oxidation (M))|F}{I|L} 9.0657;7.2174;5.6525;5.1513;4.9356;4.9198;4.161;3.9245;3.7734;3.1717 +;+;-;-;-;-;-;-;-;- + 1816 NaN NaN 227541.7 NaN 13655 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17078 72.204 NaN 466720 35 0 47391 0.261 + 13276 KYMDINFDF 9 78 596.7710756229087 1191.5275983126173 2 596.771240234375 MULTI HCD FTMS 0 0 0 17073 295813.625 0.12317242022553714 13 -0.38457489013671875 5 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 79.42699986076722 0.0060377907040421955 1 [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 75.799 0 0 6.3615 6.3615 88.549 0 0 0 3.2568864632742844 57.03070327321406 3.2568864632742844 9.208187539523749 0 2.6237125054200234 0 0 0.75 + + [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MD{I|L}ND{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}[MD]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DAAD{M(Oxidation (M))|F};[YK]MD{I|L}GGD{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QED{M(Oxidation (M))|F};[YK]{I|L}[MD]GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.3615;5.5887;5.2326;4.4598;4.3856;4.2429;4.032;3.6128;3.5329;3.4701 +;-;-;-;-;-;-;-;-;- + 1794 NaN NaN 155275.3 NaN 13656 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17079 72.208 NaN 639450 35 0 85340 0.261 + 17244 LYPEIFEKF 9 89 593.3134307090003 1184.6123084848005 2 593.3136596679688 MULTI HCD FTMS 0 0 0 17073 168184.421875 0.854921651795412 -1 0.0328826904296875 6 Unmodified _LYPEIFEKF_ ENSG00000119778|ENST00000238789|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 31.26834338654808 0.10542797264966089 1 [Y{I|L}]Q[KT]EEKC 9 5 35.529 0 0 2.9992 0 0 0 59.038223695671974 59.038223695671974 15.632412039543063 0 0 0 0 0.5 1.6989700043360187 0.5 0 [Y{I|L}]Q[KT]EEKC 2.9992 - 1313 NaN NaN 188715.5 NaN 13657 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17080 72.212 NaN 98493 35 0 4744.7 0.264 + 16537 LTPKSTPV 8 60 421.75136438601817 NaN 0 421.7513732910156 PEAK HCD FTMS 0 0 0 17073 46619.55078125 0.4509989911043504 21 -0.5997390747070312 7 Unmodified _LTPKSTPV_ ENSG00000101057|ENST00000217026|MYBL2;nc|ENSG00000101057|P10244-2|MYBL2 2.302733041254933 0.38822285293237185 1 S 1 7 3.0989 0 0 0.36827 0 0 439.2817987409832 312.15021692447505 751.4320156654583 0 0 0 0 0 0 0 0 0 + S 0.36827 + + 7 + NaN NaN 99864.8 NaN 13658 3420 17073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17082 72.217 NaN 1101100 35 0 62372 0.327 + 21541 PYLGKYKAGF 10 122 572.3137229209694 1142.6128929087388 2 572.3259887695312 MULTI HCD FTMS 0 0 0 17081 40216.69921875 0.5140628011460151 9 -0.2657012939453125 1 Unmodified _PYLGKYKAGF_ ENSG00000138356|ENST00000374700|AOX1 12.531546534597751 0.39389615866941496 1 PYYS 4 7 45.522 0 0 3.984 0 0 0 629.4052828424436 629.4052828424436 7.043775392769895 0 0 0 0 0 2 0.2614393726401688 0 PYYS 3.984 - 2332 + NaN NaN 251812 NaN 13659 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17083 72.221 NaN 683890 35 0 62817 0.262 + -1 EDPLVMNL 8 74 473.73125752503404 945.4479621168681 2 473.7310791015625 MULTI HCD FTMS 0 0 0 17081 235645.125 0.4373296865240305 10 -0.3018341064453125 2 Oxidation (M) _EDPLVM(Oxidation (M))NL_ REV__ENSG00000174282|ENST00000380599|ZBTB4 26.88365393820708 0.39599352634412927 1 {M(Oxidation (M))|F}DAV{I|L}R{I|L} 7 -1 31.559 0 0 3.338 0 0 112.96688666211931 0 112.96688666211931 0 -1.18817098657793 -1.18817098657793 0 0 0.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}DAV{I|L}R{I|L} 3.338 - 443 + NaN NaN 184076.9 NaN 13660 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17084 72.225 NaN 807920 35 0 120080 0.261 -1 VMMTLVMVVF 10 81 609.3038772485819 1216.5932015639637 2 609.3034057617188 MULTI HCD FTMS 0 0 0 17081 286524.78125 1 0 0 3 3 Oxidation (M) _VM(Oxidation (M))M(Oxidation (M))TLVM(Oxidation (M))VVF_ tr|U7SVY0|U7SVY0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01379PE=4SV=1 20.453626601364224 0.3197956946484955 1 [Y{I|L}]{M(Oxidation (M))|F}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AVV 9 -1 60.072 0 0 4.9377 0 0 0 162.05696101484264 162.05696101484264 37.61439372640169 0 0 0 0 1.3807196863200843 2 0.6421590589602533 0 [Y{I|L}]{M(Oxidation (M))|F}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AVV 4.9377 - 959 NaN NaN 198866.2 NaN 13661 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17085 72.228 NaN 507420 35 0 102080 0.261 + 16170 LPVEEFNEL 9 65 545.277111237824 1088.5396695424479 2 545.2767944335938 MULTI HCD FTMS 0 0 0 17081 198407.046875 0.6940439050695173 -3 0.0960845947265625 4 Unmodified _LPVEEFNEL_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 96.36657018975838 0.004359138328518304 1 [VP]{I|L}EE{M(Oxidation (M))|F}NE{I|L} 9 2 + 80.015 0 0 7.3507 7.3507 92.352 0 0 0 4.137342758552691 59.12462815080637 4.137342758552691 13.455612550363796 0 2.0669015600442577 0 0.3494850021680094 0.4247425010840047 [VP]{I|L}EE{M(Oxidation (M))|F}NE{I|L};[VP]{I|L}EE{M(Oxidation (M))|F}GGE{I|L};{[QN]|[E{I|L}]|[KN]}[VP]E{M(Oxidation (M))|F}NE{I|L};{[QN]|[E{I|L}]|[KN]}[VP]E{M(Oxidation (M))|F}GGE{I|L};{[QN]|[E{I|L}]|[KN]}D[{I|L}P]{M(Oxidation (M))|F}NE{I|L};{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F}[{I|L}P]NE{I|L};{[QN]|[E{I|L}]|[KN]}D[{I|L}P]{M(Oxidation (M))|F}GGE{I|L};{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F}[{I|L}P]GGE{I|L};{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F}EQ[VP]{I|L};{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F}E[AG][VP]{I|L} 7.3507;6.1146;6.0676;5.2217;5.1647;4.815;4.3188;3.9691;3.0872;2.2413 -;-;-;-;-;-;-;-;-;- 398 NaN NaN 166139.9 NaN 13662 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17086 72.231 NaN 345230 35 0 40284 0.261 -1 QYSMEYFQF 9 77 629.7581248128574 1257.5016966925148 2 629.758056640625 MULTI HCD FTMS 0 0 0 17081 80164.03125 0.793782793062888 -1 0.02701568603515625 5 Oxidation (M) _QYSM(Oxidation (M))EYFQF_ ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 31.26834338654808 0.10542797264966089 1 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 4 -1 42.735 0 0 3.3984 0 0 654.2311878888687 0 654.2311878888687 0 13.364583001786645 0 0 0 1.2302046884880937 0 0 0 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3.3984 + + 340 NaN NaN 135727.4 NaN 13663 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17087 72.235 NaN 182880 35 0 22189 0.261 + 29183 TYITNQAAVYF 11 54 645.8223328248116 1289.6301127164231 2 646.3236694335938 MULTI HCD FTMS 0 0 0 17081 63995.76171875 0.8495059897146137 1 -0.02625274658203125 6 Unmodified _TYITNQAAVYF_ ENSG00000168439|ENST00000305218|STIP1;ENST00000394563.4_1_X:85340081-85340624:-|nuORF;nc|ENSG00000168439|P31948-2|STIP1;nc|ENSG00000168439|P31948-3|STIP1 23.80106514851385 0.24970295077337615 1 [YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[DP]AVY{M(Oxidation (M))|F} 11 6 + 41.018 0 0 3.1806 3.1806 84.983 0 0 0 0.7827354634676809 28.5705576812229 0.7827354634676809 9.841835760654654 0 1.3807196863200843 0 0 0 [YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[DP]AVY{M(Oxidation (M))|F};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RN]AVY{M(Oxidation (M))|F} 3.1806;2.4174 -;- 116 NaN NaN 112265.8 NaN 13664 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17088 72.238 NaN 242550 35 0 26460 0.264 + 30668 VPEAWEEL 8 62 486.7375450386057 971.4605371440114 2 486.7370910644531 MULTI HCD FTMS 0 0 0 17081 82141.3515625 0.7514600416408386 6 -0.18389129638671875 7 Unmodified _VPEAWEEL_ ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9 9.347437153973935 0.5250182646323369 1 E{I|L} 2 6 25.217 0 0 2.5957 0 0 711.3236561505875 0 711.3236561505875 0 12.117581349478641 0 0 0 0 0 0.4247425010840047 0 + E{I|L} 2.5957 + + 21 NaN NaN 116161.4 NaN 13665 3421 17081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17090 72.243 NaN 1318200 35 0 171070 0.327 -1 PDGSSKGC 8 70 404.16961921983085 806.3246855064617 2 404.1700439453125 MULTI HCD FTMS 0 0 0 17089 1012583 0.09828806418669726 11 -0.33130645751953125 1 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.153887090148 0 449.153887090148 0 2.447274948966937 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 8 NaN NaN 286821.7 NaN 13666 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17091 72.247 NaN 671670 35 0 98658 0.261 + 17547 LYVGAKDHIF 10 88 581.8165383817992 1161.6185238303983 2 581.828857421875 MULTI HCD FTMS 0 0 0 17089 21921.072265625 0.8972533719982901 1 -0.0328521728515625 2 Unmodified _LYVGAKDHIF_ ENSG00000075213|ENST00000265362|SEMA3A 19.256988751693697 0.33098864134661865 1 P{I|L}{M(Oxidation (M))|F} 3 8 35.005 0 0 3.0135 0 0 786.4028693887952 0 786.4028693887952 0 4.0269415830747874 0 0 0 0.8807196863200843 0 0 0 P{I|L}{M(Oxidation (M))|F} 3.0135 - 470 + NaN NaN 191515.8 NaN 13667 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17092 72.251 NaN 362180 35 0 34197 0.261 -1 PCARASFETL 10 77 576.280496204659 NaN 0 576.26806640625 PEAK HCD FTMS 0 0 0 17089 18313.552734375 0.6140471316950603 1 -0.0328521728515625 3 Carbamidomethyl (C) _PC(Carbamidomethyl (C))ARASFETL_ ENSG00000117640|ENST00000374303|MTFR1L;ENST00000531361.1_1_1:26149550-26156105:+|nuORF;nc|ENSG00000117640|Q9H019-2|MTFR1L;nc|ENSG00000117640|Q9H019-3|MTFR1L 14.838274106304384 0.3224471714378502 1 TE{M(Oxidation (M))|F} 3 -1 20.005 0 0 1.7387 0 0 131.12087596112434 639.2425425317557 770.3634184928801 0 0 0 0 0 0 0 0.3807196863200844 0 TE{M(Oxidation (M))|F} 1.7387 - 256 + NaN NaN 129801.5 NaN 13668 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17093 72.254 NaN 467480 35 0 71498 0.261 + 20214 NYLKGHPMTAQ 11 80 630.3138040878544 1258.6130552425086 2 630.3139038085938 MULTI HCD FTMS 0 0 0 17089 141805.609375 1 0 0 4 Unmodified _NYLKGHPMTAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 23.789781309258295 0.24980126723476595 1 [YN]{I|L} 3 -1 41.796 0 0 3.3208 0 0 0 865.3997491653412 865.3997491653412 21.37095895828267 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0.6861818737241735 [YN]{I|L} 3.3208 + + 526 NaN NaN 151424.3 NaN 13669 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17094 72.258 NaN 207850 35 0 33718 0.263 + -1 PRQYITSP 8 51 502.26594193285024 NaN 0 502.2775573730469 PEAK HCD FTMS 0 0 0 17089 7645.48681640625 1 0 0 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PRQYITSP_ REV__TMEM132D|p.N288Kfs*12|1|0.07|ENSG00000151952|chr12:129699914-129699914|G/-|frameshift_variant 7.910154910731844 0.38822285293237185 1 AQ 2 -1 15.217 0 0 1.5178 0 0 131.06857174986095 669.3256868564915 800.3942586063524 0 0 0 0 0 0 0 0 0.4247425010840047 AQ 1.5178 - 18 + NaN NaN 120514.7 NaN 13670 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17095 72.261 NaN 379690 35 0 20954 0.261 + 10370 IMELAGQNEE 10 85 567.2604583166318 1132.5063637000635 2 567.2796630859375 MULTI HCD FTMS 0 0 0 17089 90216.171875 1 0 0 6 Unmodified _IMELAGQNEE_ REV__ENSG00000128487|ENST00000395527|SPECC1;REV__nc|ENSG00000128487|Q5M775-2|SPECC1;REV__nc|ENSG00000128487|Q5M775-3|SPECC1;REV__nc|ENSG00000128487|Q5M775-4|SPECC1;REV__nc|ENSG00000128487|Q5M775-5|SPECC1;REV__SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant 27.628801355627647 0.2527626205058048 1 {M(Oxidation (M))|F}PE{[QN]|[E{I|L}]|[KN]}[EP]SW 9 -1 + 36.009 0 0 3.1796 3.1796 79.841 0 0 0 1.4928876664371415 1.4928876664371415 1.4928876664371415 1.4928876664371415 0 0.5356668758921829 0 0.3807196863200844 0.2742275032520141 {M(Oxidation (M))|F}PE{[QN]|[E{I|L}]|[KN]}[EP]SW;{[YD]|[{M(Oxidation (M))|F}M]}[KQ][PA]GEPE;{M(Oxidation (M))|F}PE{[QN]|[E{I|L}]|[KN]}T[DP]W;{[YD]|[{M(Oxidation (M))|F}M]}[KA]G[PA]GEPE;{[YD]|[{M(Oxidation (M))|F}M]}[KA][QP]GEPE;{[YD]|[{M(Oxidation (M))|F}M]}[KA]TY{M(Oxidation (M))|F}PE;{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}H{[WS]|[C(Carbamidomethyl (C)){I|L}]}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DG]T{[QN]|[E{I|L}]|[KN]}EPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DG]T[KG]GEPE;{[YD]|[{M(Oxidation (M))|F}M]}[KQ][PA]WPE 3.1796;3.0478;2.9138;2.831;2.7179;2.6931;2.6389;2.5146;2.4781;2.4671 -;-;-;-;-;-;-;-;-;- 805 + NaN NaN 142317.5 NaN 13671 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17096 72.264 NaN 165110 35 0 9502.3 0.261 + 26751 SYEYRFLEF 9 55 627.2956702732074 1252.5767876132147 2 627.2964477539062 MULTI HCD FTMS 0 0 0 17089 57922.16796875 0.0692904120125004 17 -0.49078369140625 7 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 10.799506525563784 0.2670509983294061 1 PE{M(Oxidation (M))|F} 3 7 24.693 0 0 1.9714 0 0 861.3882313459 0 861.3882313459 0 14.23516269895728 0 0 0 0 0 0 0 PE{M(Oxidation (M))|F} 1.9714 - 21 NaN NaN 119999.5 NaN 13672 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17097 72.267 NaN 104810 35 0 7096.9 0.261 -1 QYQIIMTMI 9 61 586.7897642615401 1171.56497558988 2 586.789794921875 MULTI HCD FTMS 0 0 0 17089 44576.71484375 0.15741247799024752 12 -0.3507843017578125 8 2 Oxidation (M) _QYQIIM(Oxidation (M))TM(Oxidation (M))I_ ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2 10.823927491677226 0.26684000660059787 1 W{[CT]|[{M(Oxidation (M))|F}G]} 3 -1 19.705 0 0 1.6819 0 0 763.3856675838239 0 763.3856675838239 0 2.793774815719207 0 0 0 0.9247425010840047 0 0 0 W{[CT]|[{M(Oxidation (M))|F}G]} 1.6819 - 106 + NaN NaN 95397.7 NaN 13673 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17098 72.271 NaN 225170 35 0 18010 0.261 -1 APDAFDIVAM 10 72 533.249903432787 1064.485253932374 2 533.25048828125 MULTI HCD FTMS 0 0 0 17089 42338.52734375 0.7142324414869993 1 -0.0328521728515625 9 Oxidation (M) _APDAFDIVAM(Oxidation (M))_ ENSG00000183856|ENST00000361170|IQGAP3 36.12702656103203 0.1790159924230938 1 D{I|L}VA{M(Oxidation (M))|F} 5 -1 55.433 0 0 5.2075 0 0 501.2211680942865 0 501.2211680942865 0 44.14651886415513 0 0 0 2.3494850021680094 0 0 0 D{I|L}VA{M(Oxidation (M))|F} 5.2075 + + 251 + NaN NaN 115854.2 NaN 13674 3422 17089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17100 72.276 NaN 2693100 35 0 409230 0.327 + 13941 KYQYWAVVF 9 95 602.3136879258864 1202.6128229185726 2 602.3136596679688 MULTI HCD FTMS 0 0 0 17099 1936033.625 0.7142085937980582 2 -0.05899810791015625 1 Unmodified _KYQYWAVVF_ ENSG00000135845|ENST00000344529|PIGC;PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant 109.62928328672726 0.0030029239606406397 1 [YQ]KYWAVV{M(Oxidation (M))|F} 9 2 + 90.2 0 0 7.5003 7.5003 86.357 0 0 0 1.249387366082999 11.235899786366232 1.249387366082999 1.249387366082999 0 2.7302046884880937 0 0 1.305462187404089 [YQ]KYWAVV{M(Oxidation (M))|F};[YK]QYWAVV{M(Oxidation (M))|F};{[HG]|PP}PQYWAVV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[SG]YWAVV{M(Oxidation (M))|F};[YK][AG]YWAVV{M(Oxidation (M))|F};[YQ]YKWAVV{M(Oxidation (M))|F};{[HG]|PP}P[AG]YWAVV{M(Oxidation (M))|F};[YQ]YWKAVV{M(Oxidation (M))|F};[YQ]K{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};[WY][YQ]KAVV{M(Oxidation (M))|F} 7.5003;7.3964;7.3584;6.6699;6.6307;6.376;5.5108;5.3557;4.4493;4.4436 -;+;-;-;-;-;-;-;-;- + 4021 NaN NaN 465953.3 NaN 13675 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17101 72.28 NaN 1043100 35 0 204470 0.261 -1 0 78 618.3213634677372 1234.6281740022744 2 618.3211059570312 MULTI HCD FTMS 0 0 0 17099 421232 0.07194783187793231 16 -0.4579315185546875 2 NaN NaN 1 YYPEYRVV 8 -1 53.764 0 0 4.3547 0 0 0 162.0803573414038 162.0803573414038 26.73754841273228 0 0 0 0 1.6989700043360187 2 0.6139829889124311 0 YYPEYRVV 4.3547 - 587 NaN NaN 242497.7 NaN 13676 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17102 72.284 NaN 1421400 35 0 151080 0.261 -1 0 86 622.3646630437972 621.3573865771972 1 622.3509521484375 MULTI HCD FTMS 0 0 0 17099 22086.87109375 0.06585181959031884 8 -0.24272918701171875 3 NaN NaN 1 {I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 12.457 0 0 2.0048 0 0 159.0734337957503 0 159.0734337957503 0 9.69273760456403 0 0 0 0 0 0.3494850021680094 0 {I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.0048 - 41 + NaN NaN 298021 NaN 13677 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17103 72.287 NaN 232850 35 0 22264 0.264 + 2619 DVAFTDPTL 9 44 489.7426576045049 977.4707622758099 2 489.7425537109375 MULTI HCD FTMS 0 0 0 17099 71329.875 0.4034663136872302 4 -0.124786376953125 4 Unmodified _DVAFTDPTL_ ENSG00000151689|ENST00000392329|INPP1 71.92227651296345 0.008466197542043549 1 [DV]A{M(Oxidation (M))|F}TD[TP]{I|L} 9 0 + 74.359 0 0 7.6072 7.6072 94.719 0 0 0 7.428702923165389 65.40607512240769 7.428702923165389 29.75895023531386 0 2.1989700043360187 2 0.3494850021680094 0 + + [DV]A{M(Oxidation (M))|F}TD[TP]{I|L};[DV]A{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[DG]{I|L};[DV]A{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}A[DV] 7.6072;4.5628;4.2052 +;-;- + 131 NaN NaN 112987.3 NaN 13678 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17104 72.29 NaN 192530 35 0 26348 0.261 + 4085 ESPEVVFQL 9 53 524.2717353896322 1046.5289178460644 2 524.2714233398438 MULTI HCD FTMS 0 0 0 17099 86964.625 0.03311583499892187 12 -0.34407806396484375 5 Unmodified _ESPEVVFQL_ REV__CENPC|p.S868Lfs*5|1|0.3|ENSG00000145241|chr4:67490035-67490035|A/-|frameshift_variant;REV__ENSG00000145241|ENST00000273853|CENPC;REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF;REV__nc|ENSG00000145241|Q03188-2|CENPC 10.073929032068715 0.27331982688540024 1 DN{I|L}D{I|L} 5 -1 33.188 0 0 3.1712 0 0 458.22480971504064 0 458.22480971504064 0 8.394396170858727 0 0 0 0 0 0 0 DN{I|L}D{I|L} 3.1712 - 96 NaN NaN 112790.1 NaN 13679 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17105 72.294 NaN 163160 35 0 10329 0.261 -1 IPDEIIDMV 9 49 530.7655428516177 1059.5165327700354 2 530.7650146484375 MULTI HCD FTMS 0 0 0 17099 38713.55078125 0.18681603274771436 17 -0.48743438720703125 6 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 25.399314129420986 0.14091189997036632 1 {I|L}D{M(Oxidation (M))|F}V 4 -1 46.186 0 0 4.3591 0 0 567.2906300722385 0 567.2906300722385 0 31.237125054200234 0 0 0 1.4247425010840047 0 0 0 {I|L}D{M(Oxidation (M))|F}V 4.3591 + + 75 NaN NaN 104787.6 NaN 13680 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17106 72.297 NaN 290210 35 0 34411 0.261 + 23459 RLPSSWALF 9 61 538.7976616177166 1075.580770302233 2 538.7973022460938 MULTI HCD FTMS 0 0 0 17099 30063.84765625 0.084000493939182 11 -0.31793212890625 7 Unmodified _RLPSSWALF_ ENSG00000129636|ENST00000320640|ITFG1 17.11289562659939 0.2125047172822487 1 A{I|L}{M(Oxidation (M))|F} 3 6 31.7 0 0 2.9472 0 0 726.3795033185562 0 726.3795033185562 0 25.75741123860295 0 0 0 0.7887254899964358 0 0 0 + A{I|L}{M(Oxidation (M))|F} 2.9472 + + 41 NaN NaN 115047 NaN 13681 3423 17099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17108 72.302 NaN 3777200 35 0 629240 0.327 + 6143 FPEHIFPAL 9 104 535.7874980933541 1069.560443253508 2 535.7874755859375 MULTI HCD FTMS 0 0 0 17107 2123265 0.14684857202573312 13 -0.380218505859375 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 123.09622228370866 0.0010236603636890153 1 {I|L}MEH{I|L}{M(Oxidation (M))|F}P 7 4 52.89 0 0 4.945 0 0 0 199.10909448795158 199.10909448795158 18.39837192599463 0 0 0 0 1.7614393726401687 1.3979400086720375 0.5 0 {I|L}MEH{I|L}{M(Oxidation (M))|F}P 4.945 - 5880 + NaN NaN 656963.1 NaN 13682 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17109 72.306 NaN 889010 35 0 119930 0.261 + 3055 EAFVWEPAM 9 92 548.2448198099866 1094.475086686773 2 548.2445068359375 MULTI HCD FTMS 0 0 0 17107 355113.5 1 0 0 2 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 81.61307344734483 0.005330412723537057 1 VC{I|L}WEPA{M(Oxidation (M))|F} 8 4 64.194 0 0 5.8653 0 0 131.03620348463625 0 131.03620348463625 0 55.214431721207404 0 0 0 1.2302046884880937 0 0.7302046884880937 0 VC{I|L}WEPA{M(Oxidation (M))|F} 5.8653 - 719 + NaN NaN 217463.7 NaN 13683 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17110 72.31 NaN 706080 35 0 91417 0.261 + 14511 LFDAVIRL 8 80 473.78982323588014 945.5650935385603 2 473.78961181640625 MULTI HCD FTMS 0 0 0 17107 340438.75 1 0 0 3 Unmodified _LFDAVIRL_ ENSG00000111602|ENST00000553532|TIMELESS;nc|ENSG00000111602|Q9UNS1-2|TIMELESS 78.7280429016045 0.019620041644355855 1 {I|L}{M(Oxidation (M))|F}DAV{I|L}R{I|L} 8 0 + 66.68 0 0 7.0519 7.0519 86.85 0 0 0 12.5190243216651 3.9745638372773726 3.9745638372773726 3.9745638372773726 0 2.504432191740108 0 0.7302046884880937 0 + + {I|L}{M(Oxidation (M))|F}DAV{I|L}R{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAV{I|L}R{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}AV{I|L}R{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAVR{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}AVR{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}AV{I|L}R{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}V{I|L}R{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}G{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}AVR{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}VR{I|L}{I|L} 7.0519;6.6316;6.471;6.0502;5.8896;5.412;5.3309;4.8818;4.8306;4.7496 +;+;-;-;-;-;-;-;-;- + 897 + NaN NaN 185258.5 NaN 13684 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17111 72.313 NaN 282120 35 0 20073 0.261 + 13185 KYLTEGLLQF 10 71 606.3372036148426 1210.659854296485 2 606.3375244140625 MULTI HCD FTMS 0 0 0 17107 144868.203125 0.02991231602288247 22 -0.6215133666992188 4 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 37.771325159832564 0.16474695691370878 1 TEAV{I|L}Q{M(Oxidation (M))|F} 7 5 61.433 0 0 5.0743 0 0 404.24223525215 0 404.24223525215 0 57.453132367022164 0 0 0 1.5994850021680094 0 0.4247425010840047 0 TEAV{I|L}Q{M(Oxidation (M))|F} 5.0743 - 426 NaN NaN 126358.5 NaN 13685 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17112 72.317 NaN 236110 35 0 61683 0.262 -1 FPANVMDVI 9 36 511.2549282412626 1020.4953035493252 2 511.2546081542969 MULTI HCD FTMS 0 0 0 17107 104484.8046875 0.13324879797604536 -18 0.5042648315429688 5 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}DV{I|L} 4 -1 36.23 0 0 3.5502 0 0 528.2690907209 0 528.2690907209 0 36.22994718840225 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}DV{I|L} 3.5502 + + 19 NaN NaN 108801.6 NaN 13686 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17113 72.32 NaN 83011 35 0 4382.3 0.261 -1 0 38 499.2750666267353 498.2677901601353 1 499.27520751953125 MULTI HCD FTMS 0 0 0 17107 60865.80859375 0.554460443891545 2 -0.06235504150390625 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84969.6 NaN 13687 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17114 72.323 NaN 151610 35 0 13581 0.261 + 18120 MPDFDLHL 8 53 494.23385529338344 986.4531576535669 2 494.2340393066406 MULTI HCD FTMS 0 0 0 17107 49678.078125 0.03604722864871449 19 -0.5364303588867188 7 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 26.88365393820708 0.39599352634412927 1 MPD 3 5 28.5 0 0 2.8891 0 0 0 640.3081148736936 640.3081148736936 0.31234684152074976 0 0 0 0 0.3807196863200844 0 0 0 + MPD 2.8891 + + 27 + NaN NaN 116319.7 NaN 13688 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17115 72.326 NaN 82437 35 0 5572 0.261 + 22186 QLGEELGTL 9 52 480.2557297540831 NaN 0 480.2557373046875 PEAK HCD FTMS 0 0 0 17107 36145.5703125 0.6036753396481365 1 -0.03282928466796875 8 Unmodified _QLGEELGTL_ MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense 23.789781309258295 0.16196040133829917 1 {I|L}EE 3 6 21.727 0 0 2.2668 0 0 289.16177581500375 295.1406649225219 584.3024407375257 0 0 0 0 0 1.305462187404089 0 0 0 {I|L}EE 2.2668 - 49 + NaN NaN 98527 NaN 13689 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17116 72.33 NaN 162650 35 0 19071 0.261 + 8335 GYGKFLIAF 9 60 508.28462168894964 1014.5546904446993 2 508.2845458984375 MULTI HCD FTMS 0 0 0 17107 66971.2890625 0.15943123890188998 17 -0.48744964599609375 9 Unmodified _GYGKFLIAF_ ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF;nc|ENSG00000103510|Q9H7Z6-2|KAT8 28.486842064014134 0.11819662193267319 1 {I|L}A{M(Oxidation (M))|F} 3 6 37.747 0 0 3.7206 0 0 665.3554554669937 0 665.3554554669937 0 19.78855930516417 0 0 0 1.305462187404089 0 0 0 + {I|L}A{M(Oxidation (M))|F} 3.7206 + + 59 NaN NaN 102718.9 NaN 13690 3424 17107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17118 72.335 NaN 2772100 35 0 803920 0.327 + 11597 IYTKIMDLI 9 114 555.3176770361256 1108.620801139051 2 555.8029174804688 MULTI HCD FTMS 0 0 0 17117 62067.2109375 0.8409522616924404 -1 0.03282928466796875 1 Unmodified _IYTKIMDLI_ ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1 34.93206674587334 0.08860942999206235 1 P{I|L}[{I|L}A]TQT{M(Oxidation (M))|F} 8 8 50.359 0 0 4.5425 0 0 219.11461766364658 0 219.11461766364658 0 3.075521269411304 0 0 0 0 0 1.2491348669726232 0.2742275032520141 P{I|L}[{I|L}A]TQT{M(Oxidation (M))|F} 4.5425 - 6537 + NaN NaN 504386.3 NaN 13691 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17119 72.339 NaN 465230 35 0 139310 0.261 + 7900 FYVPAEPKLAF 11 49 641.3478126951351 1280.68107245707 2 641.3475952148438 MULTI HCD FTMS 0 0 0 17117 197732.828125 0.6324158143270613 4 -0.12142181396484375 2 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 27.223235318498237 0.2198854698817499 1 [YV]{M(Oxidation (M))|F} 3 8 25.458 0 0 1.9878 0 0 0 868.4581881818235 868.4581881818235 5.993624753846092 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]{M(Oxidation (M))|F} 1.9878 - 46 NaN NaN 150878.2 NaN 13692 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17120 72.343 NaN 1560600 35 0 181020 0.261 -1 0 91 622.2948358044622 1242.5751186757243 2 623.2969970703125 MULTI HCD FTMS 0 0 0 17117 165539.34375 0.30453030638378603 -4 0.11810302734375 3 NaN NaN 1 {M(Oxidation (M))|F}{I|L}[PS]Y{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 29.56 0 0 2.379 0 0 87.93193686908224 0 87.93193686908224 0 13.455612550363789 0 0 0 0.3807196863200844 0 0.6421590589602533 0 {M(Oxidation (M))|F}{I|L}[PS]Y{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.379 - 607 + NaN NaN 313322 NaN 13693 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17121 72.346 NaN 413580 35 0 19299 0.261 + 15103 LMGIWCYTF 9 94 567.2604583166318 1132.5063637000635 2 567.2605590820312 MULTI HCD FTMS 0 0 0 17117 64531.73046875 0.7153011386712644 3 -0.08530426025390625 4 Unmodified _LMGIWCYTF_ ENSG00000176623|ENST00000406452|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;nc|ENSG00000176623|Q96DB5-3|RMDN1 30.224811164608877 0.11021837014094292 1 {M(Oxidation (M))|F}PEE{I|L}[EP]SW 9 9 + 52.666 0 0 4.6504 4.6504 82.02 0 0 0 6.943284706245905 6.943284706245905 6.943284706245905 2.7422750325201406 0 0.9291746928241125 0 1.2104093769761874 0 {M(Oxidation (M))|F}PEE{I|L}[EP]SW;{M(Oxidation (M))|F}PEE{I|L}T[DP]W;[YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YGEPE;{[CT]|[{M(Oxidation (M))|F}G]}S[NP]{I|L}SGEPE;[YT][HT]{I|L}SGEPE;{[CT]|[{M(Oxidation (M))|F}G]}S[EP][KG]GEPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DG]T[KG]GEPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}SWPE;{[CT]|[{M(Oxidation (M))|F}G]}S[NP]KEEPE;[YT][HT]KEEPE 4.6504;4.4082;4.0373;3.6915;3.6661;3.4454;3.3981;3.39;3.3017;3.2802 -;-;-;-;-;-;-;-;-;- 895 + NaN NaN 159339.3 NaN 13694 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17122 72.349 NaN 204140 35 0 19014 0.261 -1 FPSNLVTEML 10 65 583.7900273697056 1165.5655018062112 2 584.2918090820312 MULTI HCD FTMS 0 0 0 17117 48959.47265625 0.5439196349666686 12 -0.34738922119140625 5 Oxidation (M) _FPSNLVTEM(Oxidation (M))L_ ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10 20.580933911654288 0.31860490502175054 1 VTE{M(Oxidation (M))|F}{I|L} 5 -1 38.404 0 0 3.2949 0 0 558.2835560529312 0 558.2835560529312 0 20.445312593723983 0 0 0 1.774227503252014 0 0 0 VTE{M(Oxidation (M))|F}{I|L} 3.2949 + + 234 NaN NaN 112301.2 NaN 13695 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17123 72.353 NaN 178940 35 0 11664 0.262 -1 FALLEVQM 8 53 483.7521728895097 965.4897928458195 2 483.7518310546875 MULTI HCD FTMS 0 0 0 17117 25087.431640625 0.418827632890945 -1 0.03282928466796875 6 Oxidation (M) _FALLEVQM(Oxidation (M))_ ENSG00000146233|ENST00000275016|CYP39A1 25.399314129420986 0.40691472774782006 1 V[YV]EVQ{M(Oxidation (M))|F} 7 -1 54.469 0 0 5.6415 0 0 83.0876672606283 0 83.0876672606283 0 48.9840322369416 0 0 0 1.9247425010840047 0 0 0.3494850021680094 V[YV]EVQ{M(Oxidation (M))|F} 5.6415 - 77 + NaN NaN 109686.9 NaN 13696 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17124 72.356 NaN 125980 35 0 20629 0.261 -1 0 43 408.5640241148902 1222.6702429448706 3 408.5643005371094 MULTI HCD FTMS 0 0 0 17117 18787.30078125 0.006332758881124892 45 -1.2488479614257812 7 NaN NaN 1 {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 5 -1 35.713 0 0 2.9209 0 0 646.3082818918041 0 646.3082818918041 0 30.228787452803374 0 0 0 1.3494850021680094 0 0 0 {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 2.9209 - 32 NaN NaN 103631.7 NaN 13697 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17125 72.359 NaN 85222 35 0 11614 0.261 + 20625 PFAPAIQTF 9 45 496.2659606933594 NaN 0 496.2659606933594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _PFAPAIQTF_ ENSG00000182179|ENST00000333486|UBA7 14.838274106304384 0.2220448417561729 1 Q 1 8 9.6041 0 0 0.9696 0 0 596.3365296541018 263.10285364322505 859.4393832973269 0 0 0 0 0 0.5 0 0 0 + Q 0.9696 + + 9 + NaN NaN 91643 NaN 13698 3425 17117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17127 72.364 NaN 2664700 35 0 351280 0.327 -1 0 115 622.2948358044622 1242.5751186757243 2 622.2948608398438 MULTI HCD FTMS 0 0 0 17126 1140651.25 0.6282289363643861 -3 0.08852386474609375 1 NaN NaN 1 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 -1 55.261 0 0 4.4473 0 0 491.21554913705097 0 491.21554913705097 0 23.424237721975906 0 0 0 1.8807196863200843 0 0 0 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.4473 - 6102 NaN NaN 499168.8 NaN 13699 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17128 72.369 NaN 964100 35 0 87296 0.261 + 19753 NYAWVYYHL 9 96 614.7929287250602 1227.5713045169202 2 614.7929077148438 MULTI HCD FTMS 0 0 0 17126 378863.25 0.006752129399388218 115 -3.1312789916992188 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 105.26 0 0 8.5749 8.5749 96.179 0 0 0 25.375240784723374 16.478174818886373 16.478174818886373 28.34244409179611 0 2.774227503252014 1.6989700043360187 0 1.9718487496163561 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};E[HQ]{[TV]|[{I|L}S]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VD[NP]H{I|L};E[HV][QT]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VDA[YN]{I|L};[WY]{[QG]|[NA]}VYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{[TV]|[{I|L}S]}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YN]A[KC]QQN{M(Oxidation (M))|F}{I|L} 8.5749;6.266;4.4593;3.7641;3.706;3.2347;2.8777;2.6612;2.6138;2.5629 +;-;-;-;-;-;-;-;-;- + 1862 NaN NaN 253865.7 NaN 13700 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17129 72.372 NaN 670810 35 0 44545 0.261 + 5597 FLQNKSFIF 9 99 572.3137229209694 1142.6128929087388 2 572.3261108398438 MULTI HCD FTMS 0 0 0 17126 39508.98046875 0.5050165121636776 14 -0.3989105224609375 3 Unmodified _FLQNKSFIF_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|219|2|anti-sense 12.531546534597751 0.2520865569484384 1 PYYS 4 -1 46.542 0 0 4.0733 0 0 0 629.4038179986936 629.4038179986936 2.163996686592924 0 0 0 0 0 2 0 0 PYYS 4.0733 - 659 + NaN NaN 186935.8 NaN 13701 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17130 72.376 NaN 316110 35 0 44011 0.261 + 25891 SNFTWFAVFV 10 60 609.3038772485819 1216.5932015639637 2 609.3033447265625 MULTI HCD FTMS 0 0 0 17126 122239.625 0.4266284558938129 5 -0.154205322265625 4 Unmodified _SNFTWFAVFV_ REV__ENST00000498152.1_1_3:113344816-113344903:+|nuORF 12.240655878213236 0.39661705172222156 1 [Y{I|L}]{M(Oxidation (M))|F}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AVV 9 -1 51.137 0 0 4.2033 0 0 0 162.05695192087038 162.05695192087038 35.652209333178604 0 0 0 0 1.305462187404089 2 0 0 [Y{I|L}]{M(Oxidation (M))|F}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AVV 4.2033 - 218 NaN NaN 131518.2 NaN 13702 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17131 72.379 NaN 324750 35 0 64866 0.263 + 21012 PLPEGWEI 8 47 470.74243466578787 939.4703163983758 2 470.7422790527344 MULTI HCD FTMS 0 0 0 17126 163545.90625 0.36914134963419276 13 -0.36940765380859375 5 Unmodified _PLPEGWEI_ ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-3|WWP1;nc|ENSG00000123124|Q9H0M0-6|WWP1;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 16.942295170755138 0.46913822049235215 1 EWE{I|L} 4 4 30.522 0 0 3.2488 0 0 364.20921523261876 0 364.20921523261876 0 17.33410649039925 0 0 0 0.8494850021680094 0 0 0 EWE{I|L} 3.2488 - 88 NaN NaN 133493.3 NaN 13703 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17132 72.382 NaN 307830 35 0 29385 0.261 + 13277 KYMDINFDF 9 61 596.7710756229087 1191.5275983126173 2 596.7715454101562 MULTI HCD FTMS 0 0 0 17126 136497.421875 0.056835508529703205 19 -0.5330429077148438 6 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 46.0223103267499 0.037698999139422325 1 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 59.742 0 0 5.0139 0 0 422.1996327130875 0 422.1996327130875 0 48.94016261540408 0 0 0 2.1861818737241734 0 0 0 + D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.0139 + + 681 NaN NaN 125894.2 NaN 13704 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17133 72.386 NaN 200990 35 0 13548 0.261 + 14745 LHSYTFLPF 9 72 562.7932122503262 1123.5718715674523 2 562.7924194335938 MULTI HCD FTMS 0 0 0 17126 116910.9453125 0.29986959282534903 7 -0.209930419921875 7 Unmodified _LHSYTFLPF_ ENST00000484496.5_1_7:128032984-128040541:-|nuORF 16.942295170755138 0.21397866736869717 1 WKVT{M(Oxidation (M))|F} 5 7 37.493 0 0 3.3369 0 0 444.20106244192215 0 444.20106244192215 0 17.315534464597704 0 0 0 1.555462187404089 0 0 0 WKVT{M(Oxidation (M))|F} 3.3369 - 208 + NaN NaN 124393.5 NaN 13705 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17134 72.389 NaN 335860 35 0 24684 0.261 + 33827 YLKAFEEQF 9 75 587.7929111810734 NaN 0 587.7743530273438 PEAK HCD FTMS 0 0 0 17126 16873.705078125 0.5146309979365525 3 -0.09189605712890625 8 Unmodified _YLKAFEEQF_ REV__tr|U7SL89|U7SL89_FUSNUPolyribonucleotidenucleotidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pnpPE=3SV=1 20.453626601364224 0.18435338882370536 1 QE{M(Oxidation (M))|F}QE 5 -1 39.24 0 0 3.3437 0 0 347.22106615339493 162.05597864322502 509.27704479662 0 0 0 0 0 0 0 0.9247425010840047 0.6549471895720984 QE{M(Oxidation (M))|F}QE 3.3437 - 292 + NaN NaN 134912.6 NaN 13706 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17135 72.392 NaN 197480 35 0 26047 0.261 -1 FFDAELSQM 9 50 552.2395631250037 1102.4645733168072 2 552.2393798828125 MULTI HCD FTMS 0 0 0 17126 20327.408203125 0.3541570720222585 9 -0.25555419921875 9 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 20.41453444215458 0.18397929046831515 1 {I|L}SQ{M(Oxidation (M))|F} 4 -1 34.157 0 0 3.0982 0 0 609.243374040102 0 609.243374040102 0 17.1669877129645 0 0 0 1 0 0 0 {I|L}SQ{M(Oxidation (M))|F} 3.0982 + + 46 NaN NaN 109692.2 NaN 13707 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17136 72.396 NaN 211270 35 0 27884 0.261 + 35550 YYGQGFPSF 9 63 533.2379223643711 1064.4612917955421 2 533.2393188476562 MULTI HCD FTMS 0 0 0 17126 38424.05859375 0.80854894098109 -3 0.08852386474609375 10 Unmodified _YYGQGFPSF_ ENSG00000134516|ENST00000520908|DOCK2;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF 19.256988751693697 0.19398022840297344 1 A[HK]DV{I|L}A{M(Oxidation (M))|F} 8 8 34.385 0 0 3.2303 0 0 165.01664466250605 0 165.01664466250605 0 28.90092514408778 0 0 0 0.5 0 0 0 A[HK]DV{I|L}A{M(Oxidation (M))|F} 3.2303 - 68 + NaN NaN 117586.7 NaN 13708 3426 17126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17138 72.4 NaN 732220 35 0 84657 0.327 -1 PDGSSKGC 8 57 404.16961921983085 806.3246855064617 2 404.1700134277344 MULTI HCD FTMS 0 0 0 17137 593972.625 0.057654947289398566 16 -0.43781280517578125 1 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 {I|L}[EP] 3 -1 3.9524 0 0 0.49018 0 0 449.15368734907725 0 449.15368734907725 0 2.983324797206281 0 0 0 0 0 0 0 {I|L}[EP] 0.49018 - 2 NaN NaN 191411.1 NaN 13709 3427 17137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17139 72.405 NaN 2108300 35 0 388170 0.261 + 6080 FPEELTQTF 9 112 556.2691904854104 1110.5238280376207 2 556.26904296875 MULTI HCD FTMS 0 0 0 17137 604153.3125 0.8652823990598171 7 -0.193145751953125 2 Unmodified _FPEELTQTF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 125.52916310638031 0.0008761121089336018 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F} 9 0 + 80.231 0 0 7.2246 7.2246 91.875 0 0 0 11.404937734926307 47.49314281030891 11.404937734926307 12.460762528683702 0 2.548455006504028 1.3979400086720375 0.9802046884880937 0.3252574989159953 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}T[AG]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}T]EQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}T]E[AG]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DTTS[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ESTS[VP]T{M(Oxidation (M))|F};[YG]PT{[ET]|[MV]}[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EEQ[{I|L}T]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VP]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]QT{I|L}EEP{M(Oxidation (M))|F} 7.2246;6.1025;5.4414;4.3193;4.1848;4.1004;3.939;3.8972;3.7178;3.5713 +;-;-;-;-;-;-;-;-;- + 7056 NaN NaN 418663.8 NaN 13710 3427 17137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17140 72.408 NaN 1873900 35 0 346840 0.261 + 11536 IYSIDFTRF 9 88 581.3007795287762 1160.5870061243522 2 581.2901000976562 MULTI HCD FTMS 0 0 0 17137 36921.08984375 0.028453033242133986 26 -0.7327499389648438 3 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 15.248480904072842 0.22861284681709862 1 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}[R{I|L}] 9 7 {[{M(Oxidation (M))|F}C]|[YS]} + + 24.201 -0.16712 -0.066835 2.0852 2.0852 58.918 0 0 0 0 -6.861818737241734 -6.861818737241734 0 0 0 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}[R{I|L}] 2.0852 - 1228 + NaN NaN 387242.4 NaN 13711 3427 17137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17141 72.412 NaN 197600 35 0 15992 0.261 -1 MPSVPDFETL 10 60 576.2682783740897 1150.5220038149794 2 576.2680053710938 MULTI HCD FTMS 0 0 0 17137 123287.9921875 0.7629827862510865 3 -0.08180999755859375 4 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 34.40172386719151 0.19398797222092762 1 H[DP]{M(Oxidation (M))|F}ET{I|L} 7 -1 42.351 0 0 3.681 0 0 293.13658339668126 0 293.13658339668126 0 19.95522578673537 0 0 0 1 0 0 0 H[DP]{M(Oxidation (M))|F}ET{I|L} 3.681 - 244 NaN NaN 108145.1 NaN 13712 3427 17137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17142 72.415 NaN 223610 35 0 36296 0.261 + 20215 NYLKGHPMTAQ 11 74 630.3138040878544 1258.6130552425086 2 630.3133544921875 MULTI HCD FTMS 0 0 0 17137 69024.4296875 0.48675387378342205 5 -0.14080810546875 5 Unmodified _NYLKGHPMTAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 23.789781309258295 0.24980126723476595 1 [YN]{I|L} 3 -1 43.997 0 0 3.4957 0 0 0 865.400475246668 865.400475246668 30.416571675752877 0 0 0 0 1 1.6989700043360187 0 0.6549471895720984 [YN]{I|L} 3.4957 + + 647 NaN NaN 118552.1 NaN 13713 3427 17137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17144 72.42 NaN 1729400 35 0 173490 0.327 + 17190 LYMPKLLYF 9 106 602.3278679544799 1202.6411829757596 2 602.313720703125 MULTI HCD FTMS 0 0 0 17143 488071.375 0.6611241835997113 -2 0.05577850341796875 1 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 71.13359017698441 0.008721403657255008 1 {I|L}Y{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F} 9 0 + 64.121 0 0 5.3317 5.3317 83.829 0 0 0 4.0010867008473525 4.0010867008473525 4.0010867008473525 4.0010867008473525 0 2.385151878060192 1.6989700043360187 0 0.5866968715561641 + + {I|L}Y{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}{M(Oxidation (M))|F}Y;[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{M(Oxidation (M))|F}{I|L};[Y{I|L}]{M(Oxidation (M))|F}PKY{I|L}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PK{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PKY{I|L}{M(Oxidation (M))|F}{I|L};[KP]{I|L}{I|L}Y{M(Oxidation (M))|F}{I|L}Y{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[Y{I|L}]{I|L}{I|L}Y{M(Oxidation (M))|F} 5.3317;4.999;4.2055;3.8323;3.4356;3.238;2.8789;2.8413;2.3438;2.0935 +;+;-;-;-;-;-;-;-;- + 2150 + NaN NaN 366461.9 NaN 13714 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17145 72.424 NaN 2541700 35 0 411800 0.261 + 27229 SYNPLWLRI 9 105 581.3243067189838 1160.6340605047676 2 581.3245239257812 MULTI HCD FTMS 0 0 0 17143 534907.125 0.09950376668547026 -5 0.1443023681640625 2 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 117.76058876431921 0.001675465467887476 1 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L} 9 0 + 83.999 0 0 7.2373 7.2373 91.305 0 0 0 10.268024924119672 16.47817481888636 10.268024924119672 10.268024924119672 0 2.6747425010840047 0 1.5669015600442577 1.4291746928241125 + + {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};[YN]SP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}WR{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L};[YN]SP{I|L}WR{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}W{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}WR{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}RW{I|L} 7.2373;6.3526;6.0272;5.2725;5.2125;5.1425;4.4791;4.3043;4.3036;4.1068 +;-;-;-;-;-;-;-;-;- + 2059 NaN NaN 465223.9 NaN 13715 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17146 72.428 NaN 743940 35 0 137030 0.261 + 14719 LHIVTQVHCW 10 80 618.3213634677372 1234.6281740022744 2 618.321533203125 MULTI HCD FTMS 0 0 0 17143 214942.203125 0.036712845875692915 21 -0.5985870361328125 3 Unmodified _LHIVTQVHCW_ ENST00000319074.5_1_14:23567332-23567638:+|nuORF 5.731851221503515 0.44496410492002586 1 YYPEY 5 10 41.276 0 0 3.3432 0 0 0 516.3216646783811 516.3216646783811 23.31760644949579 0 0 0 0 0.805462187404089 2 0 0 YYPEY 3.3432 - 159 + NaN NaN 220884.9 NaN 13716 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17147 72.431 NaN 215090 35 0 25318 0.261 + 16171 LPVEEFNEL 9 48 545.277111237824 1088.5396695424479 2 545.2767333984375 MULTI HCD FTMS 0 0 0 17143 72378.078125 0.2531843741162563 4 -0.1212921142578125 4 Unmodified _LPVEEFNEL_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 28.494509381512117 0.11816142465008336 1 EE{M(Oxidation (M))|F}NE{I|L} 6 3 43.237 0 0 3.972 0 0 309.2056141584 0 309.2056141584 0 30.049406363485858 0 0 0 1.0752574989159953 0 0 0 + EE{M(Oxidation (M))|F}NE{I|L} 3.972 + + 103 NaN NaN 123057.8 NaN 13717 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17148 72.435 NaN 129450 35 0 7890.9 0.261 + 18293 MPDWFEAKL 9 52 568.7760514179449 1135.5375499026898 2 568.7759399414062 MULTI HCD FTMS 0 0 0 17143 58892.8125 0.6640235903720332 1 -0.0361175537109375 5 Unmodified _MPDWFEAKL_ ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant 26.020703789607367 0.13554323117744113 1 MPDW{M(Oxidation (M))|F}EA[K{I|L}] 9 0 + 62.841 0 0 5.534 5.534 91.166 0 0 0 58.22608197622385 7.147642715192504 7.147642715192504 31.76091259055681 0 1.4247425010840047 0 0 0 + + MPDW{M(Oxidation (M))|F}EA[K{I|L}];MPDW{M(Oxidation (M))|F}[DV]{[QV]|[N{I|L}]|[RA]|[KV]} 5.534;2.737 +;- + 76 + NaN NaN 102046.1 NaN 13718 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17149 72.438 NaN 203190 35 0 24615 0.261 -1 INIEELFQ 8 64 524.2717353896322 1046.5289178460644 2 524.2720947265625 MULTI HCD FTMS 0 0 0 17143 24026.349609375 0.009149152650177857 17 -0.477264404296875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))INIEELFQ_ chr18:9845691-9855990|150|11.22|0.65|4.11|+|2|RAB31,None|1;ENSG00000168461|ENST00000578921|RAB31 8.593279151180031 0.5292430274356741 1 P{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.5722 0 0 784.3970341564144 0 784.3970341564144 0 5.779550148593485 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 1.5722 - 223 + NaN NaN 114255.9 NaN 13719 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17150 72.441 NaN 124930 35 0 15576 0.261 + 30823 VPWDDLDL 8 35 486.7375450386057 971.4605371440114 2 486.73748779296875 MULTI HCD FTMS 0 0 0 17143 27135.67578125 0.24824738897819276 13 -0.36931610107421875 7 Unmodified _VPWDDLDL_ REV__ENSG00000157985|ENST00000304032|AGAP1;REV__ENST00000453371.2_1_2:236954608-237032763:+|nuORF;REV__ENST00000482882.1_1_2:236949400-236957926:+|nuORF;REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1 2.577480529830294 0.5381683276125971 1 {[QN]|[E{I|L}]|[KN]}[EP]WW{I|L} 7 -1 + 0 0 0 0 0 39.275 0 0 0 0 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}[EP]WW{I|L} 0 - 5 NaN NaN 92097.4 NaN 13720 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17151 72.445 NaN 304120 35 0 40980 0.261 + -1 YSYIMKLF 8 65 540.7775311534505 1079.5405093737008 2 541.27734375 MULTI HCD FTMS 0 0 0 17143 46153.125 0.12304267053831605 -4 0.118133544921875 8 Oxidation (M) _YSYIM(Oxidation (M))KLF_ REV__ENSG00000173612|ENST00000310357|GPRC6A;REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A;REV__nc|ENSG00000173612|Q5T6X5-3|GPRC6A 18.13498045792455 0.4603629008820478 1 VA{M(Oxidation (M))|F} 3 -1 29.253 0 0 2.7097 0 0 744.356654248504 0 744.356654248504 0 7.056586537486595 0 0 0 0.3054621874040891 0 0 0 VA{M(Oxidation (M))|F} 2.7097 - 245 + NaN NaN 144588.1 NaN 13721 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17152 72.448 NaN 168690 35 0 13142 0.261 -1 VFCDDKIIF 9 58 578.788299694146 NaN 0 578.7769165039062 PEAK HCD FTMS 0 0 0 17143 11252.134765625 1 0 0 9 Carbamidomethyl (C) _VFC(Carbamidomethyl (C))DDKIIF_ ENSG00000092201|ENST00000216297|SUPT16H;ENST00000556217.5_1_14:21837875-21852161:-|nuORF 5.230669730166228 0.26989974671959066 1 GS 2 -1 5.5732 0 0 0.48229 0 0 166.07316813653557 842.38664630316 1008.4598144396955 0 0 0 0 0 0 0 0 0 GS 0.48229 - 9 + NaN NaN 109184.1 NaN 13722 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17153 72.451 NaN 137450 35 0 18940 0.262 + 21102 PNLAFLRF 8 53 489.28193591233725 NaN 0 489.2822570800781 PEAK HCD FTMS 0 0 0 17143 7731.0859375 0.21683300524301763 -2 0.05577850341796875 10 Unmodified _PNLAFLRF_ ENSG00000197943|ENST00000564138|PLCG2 32.30548876998284 0.37718268050996573 1 {I|L}A{M(Oxidation (M))|F} 3 5 25.688 0 0 2.6304 0 0 211.09824202478927 431.2408846490844 642.3391266738737 0 0 0 0 0 1.25 0 0 0 + {I|L}A{M(Oxidation (M))|F} 2.6304 + + 16 + NaN NaN 105611.8 NaN 13723 3428 17143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17155 72.456 NaN 2161900 35 0 347040 0.327 + 6144 FPEHIFPAL 9 106 535.7874980933541 1069.560443253508 2 535.7872924804688 MULTI HCD FTMS 0 0 0 17154 1007610.8125 0.06968805541150715 18 -0.5033645629882812 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 109.62928328672726 0.0030029239606406397 1 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 8 4 49.22 0 0 4.6019 0 0 165.07899672675939 0 165.07899672675939 0 22.19752975658702 0 0 0 1.7059771852360797 0 0.8539171939081174 0 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 4.6019 - 3171 NaN NaN 409174.2 NaN 13724 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17156 72.461 NaN 1106800 35 0 120840 0.261 + 3056 EAFVWEPAM 9 85 548.2448198099866 1094.475086686773 2 548.2445068359375 MULTI HCD FTMS 0 0 0 17154 273504.9375 0.7701901997530367 5 -0.13751220703125 2 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 88.90359156742426 0.00455469703666567 1 ETC{I|L}WEPA{M(Oxidation (M))|F} 9 3 + 75.882 0 0 6.9332 6.9332 86.398 0 0 0 60.13174048436923 9.488474775526186 9.488474775526186 3.4948500216800937 0 1.2302046884880937 0 0.6747425010840047 0 ETC{I|L}WEPA{M(Oxidation (M))|F};ETCEW{I|L}PA{M(Oxidation (M))|F};M{[ES]|[DT]|[{I|L}C]}VWEPA{M(Oxidation (M))|F};M{[ES]|[DT]|[{I|L}C]}DW{I|L}PA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}VWEPA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}DW{I|L}PA{M(Oxidation (M))|F};ET[MT]W{I|L}[WE];E[W{M(Oxidation (M))|F}]{[DA]|[EG]}{I|L}PA{M(Oxidation (M))|F};E[W{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}EPA{M(Oxidation (M))|F};E[W{M(Oxidation (M))|F}]D[VP]VG{M(Oxidation (M))|F} 6.9332;6.6139;6.2455;5.9262;5.6068;5.2875;4.2669;4.2165;4.1671;2.8618 -;-;-;-;+;-;-;-;-;- + 1726 + NaN NaN 258847.6 NaN 13725 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17157 72.464 NaN 183070 35 0 26003 0.261 + 34019 YMIQEEEW 8 59 564.2394812291649 1126.4644095251297 2 564.23974609375 MULTI HCD FTMS 0 0 0 17154 40001.34765625 0.5415164678916936 1 -0.02617645263671875 3 Unmodified _YMIQEEEW_ ENSG00000077522|ENST00000366578|ACTN2;nc|ENSG00000077522|P35609-2|ACTN2 21.74664581756881 0.4337896562907935 1 D{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[PA]{M(Oxidation (M))|F} 7 7 40.194 0 0 3.5682 0 0 347.1478749005875 0 347.1478749005875 0 33.204482088348115 0 0 0 1.8494850021680094 0 1.1989700043360187 0 D{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[PA]{M(Oxidation (M))|F} 3.5682 - 141 NaN NaN 120947 NaN 13726 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17158 72.467 NaN 382590 35 0 41915 0.262 -1 VELDNMPL 8 69 473.73125752503404 945.4479621168681 2 473.73101806640625 MULTI HCD FTMS 0 0 0 17154 146217.5625 0.2713626296000515 18 -0.5033645629882812 4 Oxidation (M) _VELDNM(Oxidation (M))PL_ ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO 18.13498045792455 0.4603629008820478 1 EDAV{I|L}{I|L}R 7 -1 38.18 0 0 4.0383 0 0 130.97754650117525 0 130.97754650117525 0 -2.77188410237045 -2.77188410237045 0 0 0 0 0 0 EDAV{I|L}{I|L}R 4.0383 - 312 + NaN NaN 130326.7 NaN 13727 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17159 72.471 NaN 211660 35 0 25924 0.261 -1 MADAVNNLAM 10 60 533.2379223643711 1064.4612917955421 2 533.2498779296875 MULTI HCD FTMS 0 0 0 17154 47522.2421875 1 0 0 5 Oxidation (M) _MADAVNNLAM(Oxidation (M))_ ENST00000419165.5_1_X:103220278-103220434:+|nuORF 19.256988751693697 0.33098864134661865 1 AKH[DV]{I|L}A{M(Oxidation (M))|F} 8 -1 28.945 0 0 2.7192 0 0 165.01725039751165 0 165.01725039751165 0 10.553396606206888 0 0 0 0.6549471895720985 0 0 0 AKH[DV]{I|L}A{M(Oxidation (M))|F} 2.7192 - 63 + NaN NaN 111339.5 NaN 13728 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17160 72.474 NaN 290620 35 0 23525 0.261 + 3100 EALAELEEI 9 73 508.76086785405454 1015.5071827749091 2 508.7605895996094 MULTI HCD FTMS 0 0 0 17154 78199.375 0.7269036529785815 -2 0.055633544921875 6 Unmodified _EALAELEEI_ REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant 61.357469665136826 0.01568246967499496 1 {[QN]|[E{I|L}]|[KN]}EAA{I|L}EE{I|L} 9 -1 + 66.898 0 0 6.5877 6.5877 85.867 0 0 0 19.084765876933794 46.56746321638626 19.084765876933794 3.6624210949784057 0 0.8807196863200843 0.8860566476931632 0.6549471895720984 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}EAA{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}AAE{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}E{I|L}AAEE{I|L};[VP]{[MG]|[TS]}E{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}[YN][HV]E{I|L};{[QG]|[NA]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A{I|L}EKN;{[QN]|[E{I|L}]|[KN]}[YN][HV]KN;{[QN]|[E{I|L}]|[KN]}[YN]{I|L}[HD]{I|L};[PS]{[TV]|[{I|L}S]}E{I|L}EE{I|L};{[QG]|[NA]}[W{I|L}]AAEKN 6.5877;6.227;5.2561;4.2913;4.2038;3.2281;3.1714;3.0037;2.1445;1.8966 -;-;-;-;-;-;-;-;-;- 335 NaN NaN 147285.3 NaN 13729 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17161 72.477 NaN 223920 35 0 18376 0.261 -1 0 59 595.3107676852819 1782.9104736560457 3 595.30908203125 MULTI HCD FTMS 0 0 0 17154 26898.853515625 0.05330100826052226 16 -0.4411468505859375 7 NaN NaN 1 [YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F}DP 8 -1 33.365 0 0 1.8714 0 0 0 738.4300938156483 738.4300938156483 8.900925144087779 0 0 0 0 0 1.6989700043360187 0 0 [YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F}DP 1.8714 - 189 NaN NaN 136352 NaN 13730 3429 17154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17163 72.482 NaN 529080 35 0 157320 0.327 -1 FPANVMDVI 9 39 511.2549282412626 1020.4953035493252 2 511.2548522949219 MULTI HCD FTMS 0 0 0 17162 339150.6875 0.4325166858213102 -12 0.361785888671875 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 22.736283301280096 0.1639198954644489 1 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 -1 + 44.896 0 0 4.3994 4.3994 89.884 0 0 0 3.710149894766701 26.936974992327123 3.710149894766701 44.89577516576787 0 0.9247425010840047 0 0 0.3252574989159953 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 4.3994 - 41 NaN NaN 166057.1 NaN 13731 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17164 72.487 NaN 534210 35 0 53989 0.261 -1 MVCSPVTLRI 10 92 588.315079480825 1174.61560602845 2 588.313720703125 MULTI HCD FTMS 0 0 0 17162 191572.46875 0.5046126023937807 -1 0.02617645263671875 2 Carbamidomethyl (C) _MVC(Carbamidomethyl (C))SPVTLRI_ ENSG00000146707|ENST00000310842|POMZP3;nc|ENSG00000146707|Q6PJE2-5|POMZP3 22.736283301280096 0.29844449404982915 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEPWR{I|L} 9 -1 + 47.111 0 0 4.0107 4.0107 84.773 0 0 0 16.355830254716256 19.31007075740089 16.355830254716256 9.208187539523749 0 0.8182503180159344 1.2218487496163564 0.28872548999643577 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEPWR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEPW[VG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]EPWR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F}T{I|L};N[HK]{I|L}{I|L}{M(Oxidation (M))|F}Q[{M(Oxidation (M))|F}E];[{M(Oxidation (M))|F}E][KA]EPWR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}T]{I|L}{I|L};{[ET]|[MV]}[WP]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}R{I|L};[{M(Oxidation (M))|F}E]Q{[TV]|[{I|L}S]}PWR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q[HD][KS]T{I|L} 4.0107;3.2268;3.2268;2.9826;2.2424;1.9931;1.8553;1.6593;1.6543;1.5155 -;-;-;-;-;-;-;-;-;- 876 NaN NaN 170850.1 NaN 13732 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17165 72.49 NaN 253720 35 0 50666 0.262 + 9554 HRGFQQLL 8 44 499.77971126543747 997.544869597675 2 499.77978515625 MULTI HCD FTMS 0 0 0 17162 177869.6875 0.704755645426003 -3 0.08180999755859375 3 Unmodified _HRGFQQLL_ ENSG00000188488|ENST00000329597|SERPINA5;ENST00000556730.1_1_14:95047745-95056676:+|nuORF 18.13498045792455 0.4603629008820478 1 {I|L}[VG]NQ{I|L}{I|L} 7 4 42.523 0 0 4.2628 0 0 242.10127455879064 0 242.10127455879064 0 42.52320417602277 0 0 0 0.8807196863200843 0 0 0.3494850021680094 {I|L}[VG]NQ{I|L}{I|L} 4.2628 - 70 NaN NaN 131170 NaN 13733 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17166 72.494 NaN 207720 35 0 20501 0.261 + 9828 HYPDFLVQI 9 64 566.2955720687394 1130.5765912042787 2 566.2957153320312 MULTI HCD FTMS 0 0 0 17162 101604.875 0.8766466584741129 1 -0.0361328125 4 Unmodified _HYPDFLVQI_ ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-3|PROM2 13.90604991867851 0.24021115267848145 1 VQ{I|L} 3 6 36.198 0 0 3.2017 0 0 772.3536637329048 0 772.3536637329048 0 21.505149978319906 0 0 0 1 0 0 0 + VQ{I|L} 3.2017 + + 89 NaN NaN 129145.4 NaN 13734 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17167 72.497 NaN 102910 35 0 12980 0.261 + 32759 WRLFPCLFQ 9 49 605.3166252240433 1208.6186975148864 2 606.337646484375 MULTI HCD FTMS 0 0 0 17162 20744.0390625 0.9203344831288371 -3 0.08180999755859375 5 Unmodified _WRLFPCLFQ_ MLT1D_dup12653|chr10:46414983-46415321:+|2.2106022030730497|0.1456467840680696|3.92|516.0|18|2|anti-sense;MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense 4.3292370932331545 0.3181982124262546 1 YQ{I|L} 3 8 24.693 0 0 2.0431 0 0 0 801.4181791043427 801.4181791043427 15.255762612236905 0 0 0 0 0 0 0 0 YQ{I|L} 2.0431 - 32 + NaN NaN 105732.4 NaN 13735 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17168 72.5 NaN 258210 35 0 26706 0.261 + 6820 FPSNLVTEML 10 85 583.7900273697056 1165.5655018062112 2 583.7914428710938 MULTI HCD FTMS 0 0 0 17162 36632.7890625 0.46792038941698916 -3 0.08180999755859375 6 Oxidation (M) _FPSNLVTEM(Oxidation (M))L_ ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10 45.739877483867886 0.09559676962230333 1 {[CT]|[{M(Oxidation (M))|F}G]}E[KP]VTE{M(Oxidation (M))|F}{I|L} 10 4 + 50.232 0 0 4.3096 4.3096 81.643 0 0 0 3.0102999566398125 7.269987279362624 3.0102999566398125 3.0102999566398125 0 1.7134679910804405 0 0 0.5752574989159953 {[CT]|[{M(Oxidation (M))|F}G]}E[KP]VTE{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]G[KP]VTE{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}E[KP]VT{[CA]|SS}{[QS]|[NT]};[{M(Oxidation (M))|F}E]G[KP]VT{[CA]|SS}{[QS]|[NT]} 4.3096;4.0514;1.1201;0.86183 -;-;-;- 426 NaN NaN 131766.8 NaN 13736 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17169 72.504 NaN 195930 35 0 31845 0.261 + 7901 FYVPAEPKLAF 11 49 641.3478126951351 1280.68107245707 2 641.8499145507812 MULTI HCD FTMS 0 0 0 17162 64431.11328125 0.2671856644958379 9 -0.25133514404296875 7 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 18.373094154950223 0.29699704000378496 1 VEY 3 9 30.177 0 0 2.3563 0 0 871.480905795251 0 871.480905795251 0 23.979400086720375 0 0 0 1 0 0 0 VEY 2.3563 - 24 NaN NaN 115336.6 NaN 13737 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17170 72.507 NaN 149900 35 0 21715 0.261 + 20216 NYLKGHPMTAQ 11 49 630.3138040878544 1258.6130552425086 2 630.8155517578125 MULTI HCD FTMS 0 0 0 17162 28143.283203125 0.23633667420943763 6 -0.1636199951171875 8 Unmodified _NYLKGHPMTAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 10.799506525563784 0.36298595732910816 1 [YN]{I|L}[R{M(Oxidation (M))|F}]W[DV]{M(Oxidation (M))|F} 9 -1 + 45.837 0 0 3.6418 3.6418 87.964 0 0 0 8.389399919613965 39.805906063131715 8.389399919613965 25.255762612236904 0 1 1.6989700043360187 0.3494850021680094 0 [YN]{I|L}[R{M(Oxidation (M))|F}]W[DV]{M(Oxidation (M))|F};[Y{I|L}]CW[R{M(Oxidation (M))|F}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.6418;1.6352 -;- 69 NaN NaN 119987.3 NaN 13738 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17171 72.51 NaN 193190 35 0 23435 0.261 + 1746 CLEMNESYVAI 11 48 636.2863226989032 1270.5580924646063 2 636.2859497070312 MULTI HCD FTMS 0 0 0 17162 84187.0078125 0.6977924091708694 -4 0.118072509765625 9 Unmodified _CLEMNESYVAI_ REV__ENSG00000106772|ENST00000376718|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-2|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-3|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2;REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant;REV__PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant 4.189502756095605 0.4005469306127019 1 VA{I|L} 3 -1 29.693 0 0 2.337 0 0 969.362108299025 0 969.362108299025 0 20.511525224473814 0 0 0 0.5 0 0 0 VA{I|L} 2.337 + + 14 NaN NaN 117731.3 NaN 13739 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17172 72.514 NaN 122270 35 0 13216 0.262 -1 STFHDQIAM 9 43 533.2379223643711 1064.4612917955421 2 533.2374267578125 MULTI HCD FTMS 0 0 0 17162 25032.361328125 0.5267504262395553 1 -0.0361328125 10 Oxidation (M) _STFHDQIAM(Oxidation (M))_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 11.640296217721598 0.25978676193971967 1 {I|L}A{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.6481 0 0 715.2974141661616 0 715.2974141661616 0 18.723637474483468 0 0 0 0.5 0 0 0 {I|L}A{M(Oxidation (M))|F} 2.6481 + + 35 + NaN NaN 111750.5 NaN 13740 3430 17162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17174 72.518 NaN 2467800 35 0 435330 0.327 -1 0 114 622.2948358044622 1242.5751186757243 2 622.294677734375 MULTI HCD FTMS 0 0 0 17173 1679134.875 0.9248059970421253 2 -0.05572509765625 1 NaN NaN 1 RY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 6 -1 61.598 0 0 4.9572 0 0 335.11461074043126 0 335.11461074043126 0 25.19660281674242 0 0 0 2.0451140161145327 0 0 0 RY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.9572 - 4769 NaN NaN 454232.6 NaN 13741 3431 17173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17175 72.523 NaN 663130 35 0 64641 0.261 + 19754 NYAWVYYHL 9 85 614.7929287250602 1227.5713045169202 2 614.7928466796875 MULTI HCD FTMS 0 0 0 17173 227136.90625 0.0040480510642737465 120 -3.2073287963867188 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 110.4 0 0 8.9936 8.9936 96.841 0 0 0 29.45046257204389 16.478174818886373 16.478174818886373 29.719712763997563 0 2.774227503252014 1.6989700043360187 0 2.059894379144197 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]A{[DA]|[EG]}VV{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{M(Oxidation (M))|F}V{[{M(Oxidation (M))|F}H]|[RQ]}[DC]{I|L};E[HQ]TVVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}V[DC]{I|L};E[YG]{[QG]|[NA]}VV{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}Y[PG]{I|L};E[YG]{[{M(Oxidation (M))|F}H]|[RQ]}V{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]{[QG]|[NA]}VYYH{I|L} 8.9936;6.5726;5.5564;5.0394;4.8089;4.2029;3.9645;3.6207;3.0215;2.9602 +;-;-;-;-;-;-;-;-;- + 1199 NaN NaN 202008.5 NaN 13742 3431 17173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17176 72.526 NaN 383690 35 0 27295 0.261 + 6763 FPQKWPDLL 9 94 572.3137229209694 1142.6128929087388 2 572.326416015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 10.823927491677226 0.26684000660059787 1 PYYS 4 8 42.652 0 0 3.7328 0 0 0 629.4048555963499 629.4048555963499 5.531417698018117 0 0 0 0 0 2 0 0 PYYS 3.7328 - 769 + NaN NaN 142883.9 NaN 13743 3431 17173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17177 72.53 NaN 114740 35 0 9020.6 0.261 + 25659 SHLVDYFPEF 10 64 627.2956702732074 1252.5767876132147 2 627.2978515625 MULTI HCD FTMS 0 0 0 17173 25523.80859375 0.030533304874625924 26 -0.7260284423828125 4 Unmodified _SHLVDYFPEF_ ENSG00000088256|ENST00000078429|GNA11;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENST00000590534.1_1_19:3119101-3121174:+|nuORF 9.38312468134398 0.42334543440173333 1 PE{M(Oxidation (M))|F} 3 7 26.682 0 0 2.1302 0 0 861.3900013654312 0 861.3900013654312 0 8.723637474483468 0 0 0 0.3494850021680094 0 0 0 + PE{M(Oxidation (M))|F} 2.1302 + + 16 NaN NaN 96774 NaN 13744 3431 17173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17178 72.533 NaN 79687 35 0 7304.7 0.264 + 20759 PGKRATRG 8 46 421.75136438601817 NaN 0 421.75140380859375 PEAK HCD FTMS 0 0 0 17173 27125.841796875 0.2624162412171322 32 -0.8954544067382812 5 Unmodified _PGKRATRG_ REV__ENST00000437621.6_1_7:1626575-1627631:+|nuORF;REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF;REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92129.6 NaN 13745 3431 17173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17179 72.536 NaN 54314 35 0 11624 0.261 -1 VQHSRNMQFHG 11 42 452.8802783574015 NaN 0 452.87042236328125 PEAK HCD FTMS 0 0 0 17173 6227.2216796875 0.40270838189562735 1 -0.02286529541015625 6 Oxidation (M) _VQHSRNM(Oxidation (M))QFHG_ ENSG00000101890|ENST00000218006|GUCY2F 0.4545168274142398 0.3408308101233591 1 {I|L} 1 -1 2.4743 0 0 0.27378 0 0 356.33402975992175 431.30356775455317 787.6375975144749 0 0 0 0 0 0 0 0 0 {I|L} 0.27378 - 1 + NaN NaN 106918.9 NaN 13746 3431 17173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17181 72.541 NaN 1800700 35 0 191580 0.327 + 17191 LYMPKLLYF 9 89 602.3278679544799 1202.6411829757596 2 602.3137817382812 MULTI HCD FTMS 0 0 0 17180 537954.875 0.7286946044476789 2 -0.052337646484375 1 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 61.357469665136826 0.01568246967499496 1 {I|L}Y{M(Oxidation (M))|F}P{I|L}K{I|L}Y{M(Oxidation (M))|F} 9 2 + 71.66 0 0 5.9586 5.9586 90.151 0 0 0 33.277872584895924 10.642492736872597 10.642492736872597 14.964329412872686 0 2.1237125054200234 1.5228787452803376 0 0 {I|L}Y{M(Oxidation (M))|F}P{I|L}K{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{M(Oxidation (M))|F}{I|L};[Y{I|L}]{M(Oxidation (M))|F}PKY{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PKY{I|L}{M(Oxidation (M))|F}{I|L};[KP]{M(Oxidation (M))|F}[Y{I|L}]{I|L}{I|L}Y{M(Oxidation (M))|F};[KP]{I|L}{I|L}Y{M(Oxidation (M))|F}{I|L}Y{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[Y{I|L}]{I|L}Y{I|L}{M(Oxidation (M))|F};[KP]{I|L}{I|L}Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5.9586;4.7143;3.7173;3.3864;2.9766;2.6457;2.0379;1.8432;1.0409;0.84627 -;+;-;-;-;-;-;-;-;- + 1061 + NaN NaN 364083.6 NaN 13747 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17182 72.546 NaN 509780 35 0 58650 0.264 + 28799 TTSMHSGS 8 64 404.16961921983085 806.3246855064617 2 404.1700134277344 MULTI HCD FTMS 0 0 0 17180 409093.78125 0.03970937279203649 21 -0.5919418334960938 2 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 1 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.1537380807741 0 449.1537380807741 0 4.436974992327125 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 3 NaN NaN 157494.9 NaN 13748 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17183 72.549 NaN 1432700 35 0 229290 0.261 + 6081 FPEELTQTF 9 112 556.2691904854104 1110.5238280376207 2 556.269287109375 MULTI HCD FTMS 0 0 0 17180 374889.375 0.5369252656080329 12 -0.329803466796875 3 Unmodified _FPEELTQTF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 122.17920374332846 0.0010792739174387011 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F} 9 0 + 82.427 0 0 7.4224 7.4224 92.315 0 0 0 11.601788748310511 53.31907991397158 11.601788748310511 12.703037561203843 0 2.3807196863200843 1.154901959985743 1.2764209843288903 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}T[AG]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}T]EQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}T]E[AG]T{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}DEVS[VP]T{M(Oxidation (M))|F};[YG]PT{[ET]|[MV]}[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TN[YV];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[MG]|[TS]}S[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]S[VP]T{M(Oxidation (M))|F} 7.4224;6.2785;5.3273;4.1835;3.9421;3.7906;3.6032;3.531;3.5286;3.3007 +;-;-;-;-;-;-;-;-;- + 5437 NaN NaN 305838.9 NaN 13749 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17184 72.553 NaN 673700 35 0 34098 0.261 + 5645 FNDLISCIRI 10 103 597.3196105914433 NaN 0 597.3195190429688 PEAK HCD FTMS 0 0 0 17180 274613.6875 0.8199633278035471 1 -0.03285980224609375 4 Unmodified _FNDLISCIRI_ ENSG00000196935|ENST00000355086|SRGAP1;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant 28.494509381512117 0.21182574702812446 1 NP{I|L}W{I|L} 5 7 23.007 0 0 1.9291 0 0 282.0861533818933 284.17282988998494 566.2589832718783 0 0 0 0 0 1.555945812348389 0 0 0 NP{I|L}W{I|L} 1.9291 - 596 + NaN NaN 181312.5 NaN 13750 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17185 72.556 NaN 871750 35 0 97315 0.261 -1 MALFEQEVL 9 84 548.2733213130575 1094.532089692915 2 548.2734375 MULTI HCD FTMS 0 0 0 17180 219337.765625 0.7629002849405419 1 -0.03285980224609375 5 Oxidation (M) _M(Oxidation (M))ALFEQEVL_ ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42 36.506200033944 0.08138327636155518 1 APEW{I|L}CV{I|L} 8 -1 56.196 0 0 5.1342 0 0 165.04577834297032 0 165.04577834297032 0 34.469034597845436 0 0 0 0.4247425010840047 0 0.6989700043360187 0 APEW{I|L}CV{I|L} 5.1342 - 1526 NaN NaN 215621.3 NaN 13751 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17186 72.559 NaN 343280 35 0 50050 0.261 + 33681 YKLYEAEFTS 10 69 625.8013722895953 1249.5881916459905 2 625.7996826171875 MULTI HCD FTMS 0 0 0 17180 97629.84375 0.5549429795069406 -1 0.02286529541015625 6 Unmodified _YKLYEAEFTS_ ENSG00000132874|ENST00000255226|SLC14A2;SLC14A2|p.P28T|1|0.65|ENSG00000132874|chr18:45624746-45624746|C/A|missense_variant 13.90604991867851 0.3810395177745597 1 T{M(Oxidation (M))|F}{I|L} 3 9 36.114 0 0 2.8901 0 0 870.375143576192 0 870.375143576192 0 11.505149978319906 0 0 0 0.8494850021680094 0 0.3807196863200844 0 T{M(Oxidation (M))|F}{I|L} 2.8901 - 125 NaN NaN 130261.9 NaN 13752 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17187 72.563 NaN 164510 35 0 22357 0.264 + 14383 LEFGAKEF 8 51 470.74243466578787 939.4703163983758 2 470.7422790527344 MULTI HCD FTMS 0 0 0 17180 54474.81640625 0.12295573585644545 19 -0.5296707153320312 7 Unmodified _LEFGAKEF_ REV__tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1 7.910154910731844 0.5302565402355366 1 WE{I|L} 3 -1 27.435 0 0 2.9203 0 0 493.254115058637 0 493.254115058637 0 12.830918867322296 0 0 0 0.4247425010840047 0 0 0 WE{I|L} 2.9203 - 9 NaN NaN 120784 NaN 13753 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17188 72.566 NaN 163330 35 0 35819 0.261 + 14294 LDEEKQLL 8 49 494.2718903622059 NaN 0 494.2718811035156 PEAK HCD FTMS 0 0 0 17180 44661.30078125 0.8416808863387423 -1 0.02286529541015625 8 Unmodified _LDEEKQLL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 14.838274106304384 0.38780017429789254 1 {I|L}Q 2 6 20.969 0 0 2.1255 0 0 131.10094319751585 611.268975805371 742.369919002887 0 0 0 0 0 1 0 0 0 {I|L}Q 2.1255 - 26 + NaN NaN 101362 NaN 13754 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17189 72.569 NaN 1095300 35 0 170140 0.261 + -1 PTCPLAPR 8 88 456.2424566686768 NaN 0 456.24267578125 PEAK HCD FTMS 0 0 0 17180 25667.015625 0.7000534941275253 -7 0.20659637451171875 9 Carbamidomethyl (C) _PTC(Carbamidomethyl (C))PLAPR_ REV__ENST00000301332.2_1_8:145691635-145692206:+|nuORF 36.04419817259434 0.34956662917365344 1 T{M(Oxidation (M))|F}{M(Oxidation (M))|F}M 4 -1 31.912 0 0 3.5051 0 0 97.05254443364215 284.17270837955317 381.2252528131953 0 0 0 0 0 1.3252574989159953 0 0.2742275032520141 0 T{M(Oxidation (M))|F}{M(Oxidation (M))|F}M 3.5051 - 261 + NaN NaN 265600.8 NaN 13755 3432 17180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17191 72.574 NaN 9976900 35 0 1337400 0.327 + 27230 SYNPLWLRI 9 118 581.3243067189838 1160.6340605047676 2 581.3244018554688 MULTI HCD FTMS 0 0 0 17190 5375747.5 1 0 0 1 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 173.68634876852585 1.8204875074637502E-09 1 SYNP{I|L}W{I|L}R{I|L} 9 0 + 91.27 0 0 7.8638 7.8638 86.416 0 0 0 0.27060049033030964 0.27060049033030964 0.27060049033030964 0.27060049033030964 0 2.6549471895720984 2 0 0.566901560044258 + + SYNP{I|L}W{I|L}R{I|L};[YN]SP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};SYGGP{I|L}W{I|L}R{I|L};[YN]SP{I|L}WR{I|L}{I|L};SYNP{I|L}{I|L}WR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}WR{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PN{I|L}W{I|L}R{I|L};SYGGP{I|L}{I|L}WR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L} 7.8638;7.8405;7.7043;7.0704;6.842;6.8274;6.7058;6.0543;6.034;5.7384 +;-;+;-;-;-;-;-;-;- + 3364 + NaN NaN 893090.6 NaN 13756 3433 17190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17192 72.579 NaN 622560 35 0 117560 0.261 + 8769 HIANMRFSLF 10 77 618.3213634677372 1234.6281740022744 2 618.3214111328125 MULTI HCD FTMS 0 0 0 17190 209260.453125 0.03574238400723933 26 -0.729034423828125 2 Unmodified _HIANMRFSLF_ REV__ENST00000573177.1_1_18:3603669-3604008:+|nuORF 8.745405648335112 0.42901288225909884 1 YY[EP]Y 5 -1 28.697 0 0 2.3243 0 0 0 516.3180025690061 516.3180025690061 10.280287236002433 0 0 0 0 0.6989700043360187 2 0 0 YY[EP]Y 2.3243 - 262 + NaN NaN 173391.9 NaN 13757 3433 17190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17193 72.582 NaN 487900 35 0 41264 0.261 + 31841 VYMIRVYLL 9 79 593.338948205577 1184.663343477954 2 593.3385009765625 MULTI HCD FTMS 0 0 0 17190 183768.046875 0.45415111274630643 -7 0.209930419921875 3 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 74.42276476219924 0.007657080072768255 1 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 68.618 0 0 5.7922 5.7922 83.709 0 0 0 11.455743614834049 16.478174818886373 11.455743614834049 2.0289375146764854 0 2.0713337517843655 1.3010299956639813 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}V[R{I|L}]Y{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}VY{I|L};[YV]{I|L}{M(Oxidation (M))|F}R{I|L}VY{I|L};[YV]{I|L}{M(Oxidation (M))|F}R{I|L}YV{I|L} 5.7922;5.6209;4.9255;4.8252;4.7542;4.5453;4.4711;4.4711;4.2999;4.2999 +;-;-;-;-;-;-;-;-;- + 1241 NaN NaN 155867.6 NaN 13758 3433 17190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17194 72.585 NaN 315240 35 0 31610 0.261 + 18413 MPSVPDFETL 10 62 576.2685579589004 1150.5225629846007 2 576.268798828125 MULTI HCD FTMS 0 0 0 17190 122660.2578125 0.588644312460788 -3 0.09185791015625 4 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 65.23502041540118 0.023231415588018726 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L} 10 0 + 51.413 0 0 4.4687 4.4687 84.224 0 0 0 2.2969624387961574 27.42870292316539 2.2969624387961574 8.450528104279016 0 1.3252574989159953 0 0.8494850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}ET{I|L};{[{M(Oxidation (M))|F}D]|MM}[PA]C(Carbamidomethyl (C))[RV]TW;{[{M(Oxidation (M))|F}D]|MM}V[EC][VP]ET{I|L};{[{M(Oxidation (M))|F}D]|MM}VS[DP][MD]{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}E[VP];{[{M(Oxidation (M))|F}D]|MM}V[EC][{I|L}T]E[VP] 4.4687;3.7342;1.3378;1.3121;1.0329;0.97241;0.036657 +;-;-;-;-;-;- + 359 NaN NaN 156974 NaN 13759 3433 17190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17195 72.589 NaN 147070 35 0 11955 0.261 -1 FPEELTQTFM 10 58 629.7862862107569 1257.5580194883137 2 629.7865600585938 MULTI HCD FTMS 0 0 0 17190 57952.37109375 0.8637125287917624 3 -0.0717620849609375 5 Oxidation (M) _FPEELTQTFM(Oxidation (M))_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 26.020703789607367 0.2677231329712098 1 QT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 42.155 0 0 3.3521 0 0 716.3426991193375 0 716.3426991193375 0 27.44972548463494 0 0 0 1.1989700043360187 0 0.4247425010840047 0 QT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3521 + + 143 NaN NaN 117820 NaN 13760 3433 17190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17197 72.594 NaN 1702400 35 0 271100 0.327 + 6145 FPEHIFPAL 9 93 535.7874980933541 1069.560443253508 2 535.787353515625 MULTI HCD FTMS 0 0 0 17196 834507.625 0.05771594835116483 23 -0.6508255004882812 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 85.35673624503755 0.00464763827098139 1 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 8 4 47.08 0 0 4.4018 0 0 165.07905776191564 0 165.07905776191564 0 27.15833638269073 0 0 0 1.7059771852360797 0 0.5941876774005248 0 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 4.4018 - 1778 NaN NaN 335353.8 NaN 13761 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17198 72.598 NaN 588900 35 0 63598 0.261 + 26828 SYIEIDEIV 9 79 540.7775311534505 1079.5405093737008 2 541.2770385742188 MULTI HCD FTMS 0 0 0 17196 337169.875 0.8988834850309748 2 -0.05228424072265625 2 Unmodified _SYIEIDEIV_ tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1 21.74664581756881 0.17247014374749275 1 AV[WH]SVA{M(Oxidation (M))|F} 8 9 28.18 0 0 2.6104 0 0 164.0801787071769 0 164.0801787071769 0 1.9825221775622026 0 0 0 0.3054621874040891 0 0 0 AV[WH]SVA{M(Oxidation (M))|F} 2.6104 - 349 + NaN NaN 178766.9 NaN 13762 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17199 72.602 NaN 779320 35 0 73474 0.261 + 3057 EAFVWEPAM 9 94 548.2448198099866 1094.475086686773 2 548.2447509765625 MULTI HCD FTMS 0 0 0 17196 199339.4375 0.5613400715545874 10 -0.2774658203125 3 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 88.90359156742426 0.00455469703666567 1 M{[DS]|[MA]|[CV]|TT}{I|L}WEPA{M(Oxidation (M))|F} 9 3 + 68.65 0 0 6.2724 6.2724 85.035 0 0 0 43.997403239773234 16.478174818886373 16.478174818886373 3.252574989159953 0 1.2302046884880937 0 0.6505149978319906 0 M{[DS]|[MA]|[CV]|TT}{I|L}WEPA{M(Oxidation (M))|F};M{[DS]|[MA]|[CV]|TT}EW{I|L}PA{M(Oxidation (M))|F};EMSVWEPA{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}{I|L}WEPA{M(Oxidation (M))|F};EMSDW{I|L}PA{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}EW{I|L}PA{M(Oxidation (M))|F};M{[DS]|[MA]|[CV]|TT}EW{I|L}[WE];E[W{M(Oxidation (M))|F}]{[DA]|[EG]}{I|L}PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PVWEPA{M(Oxidation (M))|F};E[W{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}EPA{M(Oxidation (M))|F} 6.2724;5.9753;5.6215;5.5615;5.3243;5.2643;4.5174;4.3051;4.2509;4.2335 -;-;-;-;-;-;-;-;-;- 3580 + NaN NaN 201989.7 NaN 13763 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17200 72.605 NaN 339680 35 0 51053 0.261 + 6178 FPELDSPQL 9 75 523.2638744842905 1044.5131960353808 2 523.2635498046875 MULTI HCD FTMS 0 0 0 17196 127556.234375 0.8863754021132471 -4 0.11133575439453125 4 Unmodified _FPELDSPQL_ ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF 60.07390631473393 0.0174780869009295 1 {[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}DSPQ{I|L} 9 4 + 61.466 0 0 5.8847 5.8847 87.788 0 0 0 2.632192780232785 54.01905301819761 2.632192780232785 9.208187539523749 0 1.9896518287104437 0 0.7742275032520141 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}DSPQ{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}DSP[AG]{I|L};{[QN]|[E{I|L}]|[KN]}PS{[{M(Oxidation (M))|F}D]|MM}PQ{I|L};{[QN]|[E{I|L}]|[KN]}PS{[{M(Oxidation (M))|F}D]|MM}P[AG]{I|L};{[QN]|[E{I|L}]|[KN]}P[DP][{M(Oxidation (M))|F}T]N{I|L};{[QN]|[E{I|L}]|[KN]}PC{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 5.8847;5.0031;3.7454;2.8638;0.75353;0.72362 -;-;-;-;-;- 392 NaN NaN 128476.4 NaN 13764 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17201 72.608 NaN 193520 35 0 16766 0.261 + 7902 FYVPAEPKLAF 11 65 641.3478126951351 1280.68107245707 2 641.8513793945312 MULTI HCD FTMS 0 0 0 17196 51729.59765625 0.21451448252267966 13 -0.36585235595703125 5 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 10.799506525563784 0.36298595732910816 1 [Y{M(Oxidation (M))|F}]V 3 8 18.345 0 0 1.4324 0 0 0 868.4579148288691 868.4579148288691 6.662392157646892 0 0 0 0 0.7887254899964358 0 0 0 + [Y{M(Oxidation (M))|F}]V 1.4324 + + 48 NaN NaN 112512 NaN 13765 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17202 72.612 NaN 1311400 35 0 223210 0.264 + 28401 TPFKLYSG 8 84 456.74382204695576 NaN 0 456.5792236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _TPFKLYSG_ REV__ENSG00000171310|ENST00000303694|CHST11;REV__nc|ENSG00000171310|Q9NPF2-2|CHST11 24.67388899826682 0.38182156912090326 1 T{M(Oxidation (M))|F}{M(Oxidation (M))|F}M 4 -1 27.3 0 0 2.9951 0 0 98.05460948838488 284.17255579166255 382.2271652800474 0 0 0 0 0 0.6989700043360187 0 0.28872548999643577 0 T{M(Oxidation (M))|F}{M(Oxidation (M))|F}M 2.9951 - 269 + NaN NaN 275966.3 NaN 13766 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17203 72.615 NaN 89024 35 0 16668 0.261 + 21103 PNLAFLRF 8 45 489.28193591233725 NaN 0 489.28240966796875 PEAK HCD FTMS 0 0 0 17196 10560.0234375 0.2961759364597448 4 -0.11126708984375 7 Unmodified _PNLAFLRF_ ENSG00000197943|ENST00000564138|PLCG2 7.910154910731844 0.38822285293237185 1 {I|L}A 2 6 12.959 0 0 1.327 0 0 211.097488912762 578.3103045589527 789.4077934717147 0 0 0 0 0 0.5 0 0 0 + {I|L}A 1.327 + + 3 + NaN NaN 95148.6 NaN 13767 3434 17196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17205 72.62 NaN 889310 35 0 261120 0.327 -1 FPANVMDVI 9 64 511.2549282412626 1020.4953035493252 2 511.2549133300781 MULTI HCD FTMS 0 0 0 17204 630307.9375 0.8038276501337345 -7 0.19977569580078125 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 32.78568957990786 0.09846250359632436 1 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 -1 + 63.377 0 0 6.2104 6.2104 92.682 0 0 0 11.957640437841874 36.95809273370543 11.957640437841874 38.962505624616384 0 0.9247425010840047 2 0 0.3494850021680094 [DV][WK]{M(Oxidation (M))|F}DV{I|L};[{I|L}P][YG][MN]DV{I|L} 6.2104;2.3924 -;- 288 NaN NaN 218856.6 NaN 13768 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17206 72.624 NaN 536520 35 0 86490 0.261 + 23439 RLPLRLFLI 9 88 570.8847232682322 1139.7548936032642 2 570.884765625 MULTI HCD FTMS 0 0 0 17204 310092.96875 0.5635337488451589 -3 0.07848358154296875 2 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 42.09456458481378 0.05572955244001856 1 {I|L}R{I|L}PR{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 47.29 0 0 4.1492 4.1492 81.344 0 0 0 27.359127507448342 5.959471728614574 5.959471728614574 2.9267405679224368 0 0.7161903266879721 1.0969100130080565 0 0.3807196863200844 {I|L}R{I|L}PR{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}RR[{I|L}P]{I|L}{I|L}{I|L}{M(Oxidation (M))|F};R{I|L}{I|L}PR{I|L}{I|L}{I|L}{M(Oxidation (M))|F};R{I|L}R[{I|L}P]{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}RPR{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 4.1492;3.8924;3.2869;3.0301;2.4179 -;-;-;-;- 231 + NaN NaN 161948.7 NaN 13769 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17207 72.628 NaN 167840 35 0 11784 0.261 + 3101 EALAELEEI 9 55 508.76086785405454 1015.5071827749091 2 508.7611389160156 MULTI HCD FTMS 0 0 0 17204 59007.26953125 0.5485031021610771 4 -0.11385345458984375 3 Unmodified _EALAELEEI_ REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant 37.97399986684836 0.07464525285885698 1 {[QN]|[E{I|L}]|[KN]}EAA{I|L}EE{I|L} 9 -1 + 38.79 0 0 3.8198 3.8198 83.059 0 0 0 2.9782844485415154 23.216744400230887 2.9782844485415154 7.574703959221843 0 0.7614393726401688 0 0.3494850021680094 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}EAA{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}[YN][HV]E{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}S[RV]EE{I|L};[{M(Oxidation (M))|F}T][RD][HV]E{I|L};{[QN]|[E{I|L}]|[KN]}[YN]{I|L}[HD]{I|L};[{M(Oxidation (M))|F}T][RD]{I|L}[HD]{I|L} 3.8198;3.0739;3.0293;2.3856;1.4667;0.77841 -;-;-;-;-;- 128 NaN NaN 104665.2 NaN 13770 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17208 72.631 NaN 257210 35 0 67540 0.261 + 16395 LSHWVDIAL 9 51 527.2901564449884 1052.5657599567767 2 527.2904052734375 MULTI HCD FTMS 0 0 0 17204 90119.6328125 0.627725607495107 -2 0.045623779296875 4 Unmodified _LSHWVDIAL_ ENSG00000122435|ENST00000370141|TRMT13;ENST00000482437.5_1_1:100606401-100609704:+|nuORF 11.640296217721598 0.25978676193971967 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}[QT]{I|L}A 8 6 47.625 0 0 4.5246 0 0 0 128.0722883851794 128.0722883851794 29.129712596891153 0 0 0 0 1 1.5228787452803376 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}[QT]{I|L}A 4.5246 - 92 NaN NaN 124669.4 NaN 13771 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17209 72.634 NaN 120110 35 0 13091 0.261 -1 AFFAHLAC 8 42 468.7234315682806 935.4323102033612 2 468.7234802246094 MULTI HCD FTMS 0 0 0 17204 8683.3701171875 0.10562803064745806 14 -0.39881134033203125 5 Carbamidomethyl (C) _AFFAHLAC(Carbamidomethyl (C))_ ENSG00000183495|ENST00000389561|EP400;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400 0.7936320650641473 0.540814922690045 1 T 1 -1 4.6041 0 0 0.49219 0 0 496.19076245235243 335.16074548892817 831.3515079412806 0 0 0 0 0 0 0 0 0 T 0.49219 - 4 + NaN NaN 94310.5 NaN 13772 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17210 72.638 NaN 408400 35 0 62472 0.261 + 30866 VQPRNWLLF 9 70 586.8324733058458 1171.6503936784916 2 586.8313598632812 MULTI HCD FTMS 0 0 0 17204 129697.296875 0.033381939395975065 -8 0.21929168701171875 6 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 39.957323273324995 0.06554068735427583 1 {[QV]|[N{I|L}]|[RA]|[KV]}[RP]{[WN]|[YH]}{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 41.118 0 0 3.5094 3.5094 82.223 0 0 0 2.497549464331996 28.749387366083 2.497549464331996 6.262874945799759 0 1 0 0 1.0994850021680094 + + {[QV]|[N{I|L}]|[RA]|[KV]}[RP]{[WN]|[YH]}{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP][W{I|L}]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP][W{I|L}]QV{M(Oxidation (M))|F} 3.5094;2.9749;2.4659 +;-;- + 135 NaN NaN 142273.2 NaN 13773 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17211 72.641 NaN 119550 35 0 27835 0.262 + 18331 MPFDDHLL 8 46 494.23385529338344 986.4531576535669 2 494.2337341308594 MULTI HCD FTMS 0 0 0 17204 21239.916015625 0.01541203158399613 30 -0.8427810668945312 7 Unmodified _MPFDDHLL_ REV__ENST00000416602.6_1_7:66770983-66785095:+|nuORF;REV__nc|ENSG00000291153|Q8TBR4|STAG3L4 18.13498045792455 0.4603629008820478 1 MP 2 -1 20.969 0 0 2.1257 0 0 0 755.3359469049436 755.3359469049436 3.0102999566398125 0 0 0 0 0 0 0 0 MP 2.1257 + + 21 + NaN NaN 105613.2 NaN 13774 3435 17204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17213 72.646 NaN 1036100 35 0 238520 0.327 + 26997 SYLPLAHMF 9 83 539.7734843694592 NaN 0 539.7733154296875 PEAK HCD FTMS 0 0 0 17212 394688.5 0.9915950948278123 -3 0.0717620849609375 1 Unmodified _SYLPLAHMF_ ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000197142|Q9ULC5-4|ACSL5 77.98433622928108 0.0036487741833262305 1 W{I|L}P{I|L}AHM 7 3 42.189 0 0 3.9153 0 0 64.03798086186755 162.0563143365844 226.09429519845196 0 0 0 0 0 2.7302046884880937 0 0 0 W{I|L}P{I|L}AHM 3.9153 - 279 + NaN NaN 249336.2 NaN 13775 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17214 72.65 NaN 542190 35 0 64748 0.261 + 19215 NITQSCQLRL 10 91 588.315079480825 1174.61560602845 2 588.31396484375 MULTI HCD FTMS 0 0 0 17212 253209.90625 0.6669690617780784 5 -0.143402099609375 2 Unmodified _NITQSCQLRL_ ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4 28.494509381512117 0.24525010509582015 1 {I|L}R{I|L} 3 7 31.727 0 0 2.701 0 0 774.3341752468056 0 774.3341752468056 0 13.767959391884546 0 0 0 0.9247425010840047 0 0 0.3807196863200844 + {I|L}R{I|L} 2.701 + + 805 NaN NaN 183858.9 NaN 13776 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17215 72.654 NaN 541000 35 0 20706 0.261 + 34932 YSLKQTSSPAL 11 101 597.8229400640294 1193.6313271948586 2 597.822265625 MULTI HCD FTMS 0 0 0 17212 214560.984375 0.7882758805968298 3 -0.08771514892578125 3 Unmodified _YSLKQTSSPAL_ ENST00000221233.8_1_19:41892448-41892541:-|nuORF 17.44264345198275 0.3051040874848456 1 YS{M(Oxidation (M))|F}P[W{I|L}]{I|L}R{I|L} 9 8 + 35.053 0 0 2.9367 2.9367 59.245 0 0 0 11.517091614095783 8.951199659452847 8.951199659452847 0 0 0.4929928190999391 2 0 0 YS{M(Oxidation (M))|F}P[W{I|L}]{I|L}R{I|L};YS{M(Oxidation (M))|F}P{I|L}{I|L}WR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KQ]C(Carbamidomethyl (C))V{I|L}{I|L}A{I|L};[Y{M(Oxidation (M))|F}]DKPD{I|L}{I|L}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KQ]C(Carbamidomethyl (C))V{I|L}A{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KQ][CG]V{I|L}{I|L}A{I|L};[HN]NE[W{I|L}]{I|L}R{I|L};[HN]NE{I|L}{I|L}WR{I|L};{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}E{I|L}{I|L}WR{I|L};{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}E[W{I|L}]{I|L}R{I|L} 2.9367;2.9367;1.609;1.0634;0.89033;0.84122;0.82884;0.82884;0.76251;0.76251 -;-;-;-;-;-;-;-;-;- 1422 + NaN NaN 173269.9 NaN 13777 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17216 72.657 NaN 619180 35 0 53994 0.261 + 17595 LYWMFMQL 8 95 566.2694089129118 NaN 0 566.2861938476562 PEAK HCD FTMS 0 0 0 17212 15297.90234375 1 0 0 4 Unmodified _LYWMFMQL_ REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;REV__ENSG00000157680|ENST00000614521|DGKI;REV__nc|ENSG00000157680|O75912|DGKI 14.581692164780916 0.38795613832665576 1 {I|L}CS 3 -1 15.93 0 0 1.4091 0 0 51.97035043985358 772.415242766538 824.3855932063916 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}CS 1.4091 - 327 + NaN NaN 179434 NaN 13778 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17217 72.661 NaN 220890 35 0 27022 0.262 -1 VPMEDINL 8 57 473.73125752503404 945.4479621168681 2 473.73114013671875 MULTI HCD FTMS 0 0 0 17212 93574.2578125 0.17366283658895737 25 -0.7158889770507812 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 28.486842064014134 0.3788298654084067 1 {I|L}N{I|L} 3 -1 35.802 0 0 3.7868 0 0 587.2257853001278 0 587.2257853001278 0 -5.13251345633968 -5.13251345633968 0 0 0.6109243748081782 0 0 0.3494850021680094 {I|L}N{I|L} 3.7868 + + 116 NaN NaN 130102.4 NaN 13779 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17218 72.664 NaN 238130 35 0 56091 0.261 + 4230 EVERYDKKTE 10 41 432.8852100918036 NaN 0 432.88507080078125 PEAK HCD FTMS 0 0 0 17212 114339.578125 0.5619489974665297 -26 0.7405242919921875 6 Unmodified _EVERYDKKTE_ REV__ENSG00000105186|ENST00000306065|ANKRD27 0.5059551277355931 0.3397512615639078 1 D 1 -1 6.9897 0 0 0.80922 0 0 72.4220538021121 673.2855929010374 745.7076467031495 0 0 0 0 0 0 0 0 0 D 0.80922 + + 1 + NaN NaN 121347.6 NaN 13780 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17219 72.667 NaN 186880 35 0 22041 0.261 + -1 FMPFFCFLF 9 38 636.2863226989032 1270.5580924646063 2 636.2864379882812 MULTI HCD FTMS 0 0 0 17212 119224.1875 0.9882015668302673 2 -0.05898284912109375 7 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))PFFC(Carbamidomethyl (C))FLF_ REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|59 5.230669730166228 0.3113646817964458 1 VA{I|L} 3 -1 31.198 0 0 2.4554 0 0 969.3603382794937 0 969.3603382794937 0 14.744237387763093 0 0 0 0.5 0 0 0 VA{I|L} 2.4554 - 11 NaN NaN 107193.6 NaN 13781 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17220 72.671 NaN 129040 35 0 17182 0.261 -1 RWFIWLMAA 9 52 605.3166252240433 1208.6186975148864 2 605.3169555664062 MULTI HCD FTMS 0 0 0 17212 67004.25 0.6745115606590919 2 -0.05898284912109375 8 Oxidation (M) _RWFIWLM(Oxidation (M))AA_ ENSG00000108960|ENST00000262065|MMD 7.910154910731844 0.2910521888787154 1 {I|L}A{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 31.198 0 0 2.5813 0 0 788.4179051338302 0 788.4179051338302 0 18.010299956639813 0 0 0 1.5 0 0 0 {I|L}A{[MS]|[{M(Oxidation (M))|F}A]} 2.5813 - 45 + NaN NaN 113269.3 NaN 13782 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17221 72.674 NaN 391650 35 0 45310 0.261 + 16977 LYIGFHLDF 9 70 562.7932122503262 1123.5718715674523 2 562.8104248046875 MULTI HCD FTMS 0 0 0 17212 14847.0185546875 0.03808171593142119 17 -0.4873199462890625 9 Unmodified _LYIGFHLDF_ REV__ENST00000369626.7_1_1:113471860-113498806:-|nuORF 13.50788311687929 0.24365122550260465 1 [Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 + 52.519 0 0 4.6743 4.6743 82.45 0 0 0 20.87128018967597 23.85705552255025 20.87128018967597 3.4948500216800937 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}]{I|L}HAYTP{M(Oxidation (M))|F};[YV]TPHV{M(Oxidation (M))|F}[YV];[YV][K{I|L}]C(Carbamidomethyl (C))PTP{M(Oxidation (M))|F};[YV][K{I|L}][CG]PTP{M(Oxidation (M))|F} 4.6743;4.3633;1.6069;1.0735;0.25395 -;-;-;-;- 295 NaN NaN 140604.6 NaN 13783 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17222 72.677 NaN 154850 35 0 33992 0.261 -1 YPAGFMDVI 9 48 514.7416564136945 1027.468759894189 2 514.7413940429688 MULTI HCD FTMS 0 0 0 17212 72121.984375 0.6141070927279283 -12 0.34404754638671875 10 Oxidation (M) _YPAGFM(Oxidation (M))DVI_ ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000198034|ENST00000316084|RPS4X;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENST00000406274.1_1_6:13521672-13522002:+|nuORF;ENST00000486733.2_1_X:71494866-71496063:-|nuORF 4.3292370932331545 0.3181982124262546 1 DV{I|L} 3 -1 19.041 0 0 1.8532 0 0 682.2774525373062 0 682.2774525373062 0 12.051368718728813 0 0 0 0 0 0 0 DV{I|L} 1.8532 + + 19 NaN NaN 107346.8 NaN 13784 3436 17212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17224 72.682 NaN 1516400 35 0 284820 0.327 -1 0 94 622.2948358044622 1242.5751186757243 2 622.2946166992188 MULTI HCD FTMS 0 0 0 17223 805403.5 0.4435867528739866 8 -0.215179443359375 1 NaN NaN 1 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 -1 53.901 0 0 4.3378 0 0 491.2158548291823 0 491.2158548291823 0 23.72338927784169 0 0 0 1.5941876774005248 0 0 0 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.3378 - 2084 NaN NaN 326467.5 NaN 13785 3437 17223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17225 72.686 NaN 658260 35 0 72709 0.261 + 19755 NYAWVYYHL 9 93 614.7929287250602 1227.5713045169202 2 614.79296875 MULTI HCD FTMS 0 0 0 17223 293526.5 0.005231251408389506 126 -3.2221450805664062 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 113.54 0 0 9.2492 9.2492 97.241 0 0 0 29.13811573052314 16.478174818886373 16.478174818886373 31.65205560610346 0 2.8494850021680094 1.6989700043360187 0 2.1223637474483468 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]AWVWK{[{M(Oxidation (M))|F}D]|MM};[WY]{[QG]|[NA]}VYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{[TV]|[{I|L}S]}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VWK{[{M(Oxidation (M))|F}D]|MM};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{[TV]|[{I|L}S]}N{[{M(Oxidation (M))|F}D]|MM};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{NN|[MP]|[D{I|L}]|[EV]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}]{[TV]|[{I|L}S]}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9.2492;6.6708;6.1782;3.2097;2.9021;2.755;2.4026;2.3699;2.0584;1.7959 +;-;-;-;-;-;-;-;-;- + 1596 NaN NaN 193245.6 NaN 13786 3437 17223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17226 72.69 NaN 921960 35 0 193500 0.261 + 29901 VFDPKVFTF 9 74 550.295004149522 1098.575455365844 2 550.294677734375 MULTI HCD FTMS 0 0 0 17223 470410.03125 0.1642796991692161 -5 0.1407928466796875 3 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 93.93812099017352 0.0044227730261779084 1 [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 72.674 0 0 6.6153 6.6153 90.005 0 0 0 5.6424927368725974 51.70486885197654 5.6424927368725974 9.771212547196626 0 2.7614393726401687 0 0.4247425010840047 0 + + [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KP]DV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KP]DT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{[VA]|[{I|L}G]}[VG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KP]T{M(Oxidation (M))|F}DV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KP]TD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{[VA]|[{I|L}G]}[VG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.6153;5.7258;5.493;4.6036;4.5411;3.4188;3.3098;2.6688;2.5086;2.4203 +;-;-;-;-;-;-;-;-;- + 319 NaN NaN 236169 NaN 13787 3437 17223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17227 72.693 NaN 402420 35 0 45567 0.261 + 8353 GYIKGIFGF 9 66 501.2759835219066 1000.5374141106132 2 501.2757263183594 MULTI HCD FTMS 0 0 0 17223 100451.6328125 0.5369731420904327 3 -0.08104705810546875 4 Unmodified _GYIKGIFGF_ ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68 67.34385681178166 0.00994769994983633 1 [YG]{I|L}K{[VA]|[{I|L}G]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 66.48 0 0 6.6444 6.6444 92.622 0 0 0 12.627881306118454 12.627881306118454 12.627881306118454 24.463950151760656 0 2.3169015600442577 1.6989700043360187 0 0 + + [YG]{I|L}K{[VA]|[{I|L}G]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]AK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YG]{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[QV]|[N{I|L}]|[RA]|[KV]} 6.6444;4.1993;2.6391 +;-;- + 179 + NaN NaN 156914.2 NaN 13788 3437 17223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17228 72.697 NaN 438160 35 0 22375 0.261 + 35812 YYPPSQYLL 9 92 572.2896941796361 1142.564835426072 2 572.7913208007812 MULTI HCD FTMS 0 0 0 17223 63783.7578125 0.5582528357876051 1 -0.0228118896484375 5 Unmodified _YYPPSQYLL_ ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-2|LRSAM1 38.175570920033316 0.07371992880350783 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[PS]QY{I|L}{I|L} 9 2 + 52.457 0 0 4.5912 4.5912 82.359 0 0 0 3.5340874929963917 16.478174818886373 3.5340874929963917 3.5340874929963917 0 1.2614393726401687 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[PS]QY{I|L}{I|L};YYP[PS]QY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[PS][AG]Y{I|L}{I|L};YYP[PS][AG]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[KS]{M(Oxidation (M))|F}[EP]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[KS]{M(Oxidation (M))|F}{I|L}[EP];YYP[KS]{M(Oxidation (M))|F}[EP]{I|L};YYP[KS]{M(Oxidation (M))|F}{I|L}[EP];[Y{I|L}]G{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}[EP]{I|L};[Y{I|L}]G{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}[EP] 4.5912;4.2819;3.7853;3.476;2.4242;2.3705;2.1149;2.0612;1.7026;1.4392 -;+;-;-;-;-;-;-;-;- + 533 NaN NaN 148770.9 NaN 13789 3437 17223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17229 72.7 NaN 419570 35 0 84932 0.261 -1 0 64 503.59298611344735 3015.514257881084 6 503.776123046875 MULTI HCD FTMS 0 0 0 17223 24992.505859375 0.5371643206536295 2 -0.051544189453125 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.5135 0 0 2850.435474777372 0 2850.435474777372 0 6.1928031367991565 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.5135 - 23 + NaN NaN 138283.4 NaN 13790 3437 17223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17231 72.705 NaN 4706000 35 0 922200 0.327 + 24208 RYFLPPYTF 9 98 602.3135920149654 1202.6126310967306 2 602.31396484375 MULTI HCD FTMS 0 0 0 17230 2661337 0.24993160855091737 -10 0.2848968505859375 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 85.64151623876279 0.004640175941193596 1 TVVC{I|L}PPY[{M(Oxidation (M))|F}T] 10 4 74.522 0 0 6.1967 0 0 64.0174623335284 0 64.0174623335284 0 41.15840191492586 0 0 0 2.943672679568534 0 2.2856668758921828 0 TVVC{I|L}PPY[{M(Oxidation (M))|F}T] 6.1967 - 4159 + NaN NaN 815582 NaN 13791 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17232 72.709 NaN 5006600 35 0 1116800 0.214 + 27231 SYNPLWLRI 9 93 581.3243067189838 1160.6340605047676 2 581.3242797851562 MULTI HCD FTMS 0 0 0 17230 1810367.75 0.33676577071374725 5 -0.13339996337890625 2 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 128.93241758739586 0.0006697181619526092 1 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L} 9 0 + 77.472 0 0 6.675 6.675 88.244 0 0 0 9.018637558036687 16.47817481888638 9.018637558036687 9.018637558036687 0 2.7302046884880937 0 1.205112052208703 1.4119543704721593 + + {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};[YN]SP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PN{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}WR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PGG{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}RW{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}{I|L}WR{I|L};[YN]SP{I|L}{I|L}RW{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}{I|L}RW{I|L} 6.675;5.898;5.22;4.9931;4.2695;3.8183;3.7552;3.4761;2.9782;2.3536 +;-;-;-;-;-;-;-;-;- + 1722 NaN NaN 610822.5 NaN 13792 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17233 72.712 NaN 477920 35 0 55881 0.264 -1 PDGSSKGC 8 65 404.16961921983085 806.3246855064617 2 404.1700439453125 MULTI HCD FTMS 0 0 0 17230 303479.4375 0.029457739693776 27 -0.757659912109375 3 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 V 1 -1 11.783 0 0 1.4613 0 0 689.2483056620266 0 689.2483056620266 0 5.316824110565451 0 0 0 0 0 0 0 V 1.4613 - 15 + NaN NaN 169406.7 NaN 13793 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17234 72.715 NaN 1010500 35 0 214540 0.261 + 18015 MLLEALYLF 9 84 556.8062305735807 1111.5979082139613 2 557.2902221679688 MULTI HCD FTMS 0 0 0 17230 27601.84765625 0.6513714564528204 2 -0.05823516845703125 4 Unmodified _MLLEALYLF_ ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14854584-14867061:-|nuORF;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2 14.581692164780916 0.23437375358055648 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 8 5 36.661 0 0 3.298 0 0 0 127.10403211778409 127.10403211778409 8.947836874485624 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.298 - 1637 NaN NaN 234574.7 NaN 13794 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17235 72.719 NaN 234830 35 0 30092 0.261 + 14093 KYYEGTETLF 10 60 625.8013722895953 1249.5881916459905 2 625.801513671875 MULTI HCD FTMS 0 0 0 17230 109375.6328125 0.6217078428789952 5 -0.13339996337890625 5 Unmodified _KYYEGTETLF_ REV__ENSG00000108094|ENST00000374749|CUL2;REV__nc|ENSG00000108094|Q13617-2|CUL2 8.155526934196011 0.43213520406898465 1 T{M(Oxidation (M))|F}{I|L} 3 -1 25.802 0 0 2.0648 0 0 870.3744374005875 0 870.3744374005875 0 3.634993639681312 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F}{I|L} 2.0648 - 39 NaN NaN 116650.5 NaN 13795 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17236 72.722 NaN 168590 35 0 30021 0.261 + 17589 LYVWNNYFV 9 45 609.3030957622709 1216.5916385913417 2 609.3029174804688 MULTI HCD FTMS 0 0 0 17230 57139.02734375 0.24217054382151168 -12 0.34067535400390625 6 Unmodified _LYVWNNYFV_ ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1 8.593279151180031 0.2858735984551981 1 T{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1346 0 0 950.4623903467332 0 950.4623903467332 0 12.769250191953672 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.1346 - 36 NaN NaN 104352.6 NaN 13796 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17237 72.725 NaN 273970 35 0 51503 0.261 + 34084 YNLTSELRYT 10 59 630.3157054658765 1258.6168579985529 2 630.3147583007812 MULTI HCD FTMS 0 0 0 17230 88208.34375 0.7887576342191859 -3 0.08512115478515625 7 Unmodified _YNLTSELRYT_ REV__ENSG00000184432|ENST00000333188|COPB2;REV__nc|ENSG00000184432|P35606-2|COPB2 22.736283301280096 0.29844449404982915 1 [YN]{I|L}{I|L}{I|L}TQ{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 10 -1 + 61.215 0 0 4.8637 4.8637 81.394 0 0 0 14.235162698957282 0.5803717656404217 0.5803717656404217 0.5803717656404217 0 1.7302046884880937 1.6989700043360187 0.4247425010840047 0 [YN]{I|L}{I|L}{I|L}TQ{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}TQT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}T[AG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}T[AG]T{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}T[YT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}[YR][WP]T{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}T[YE][KC];[{I|L}A]E[R{M(Oxidation (M))|F}][HD]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{I|L}A]E[R{M(Oxidation (M))|F}]T[YT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.8637;4.8176;4.1355;4.0894;3.7327;2.5751;2.2384;1.8877;1.1879 -;-;-;-;-;-;-;-;- 201 + NaN NaN 130573.7 NaN 13797 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17238 72.729 NaN 113530 35 0 12051 0.261 + 33324 YFVIQPFSPLA 11 51 641.3478126951351 1280.68107245707 2 641.8500366210938 MULTI HCD FTMS 0 0 0 17230 42478.859375 0.17615312992640003 17 -0.48737335205078125 8 Unmodified _YFVIQPFSPLA_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89 8.155526934196011 0.3831532958467648 1 [Y{M(Oxidation (M))|F}]V 3 8 18.71 0 0 1.461 0 0 0 868.45692629912 868.45692629912 15.611206103324736 0 0 0 0 0.8252574989159953 0 0 0 + [Y{M(Oxidation (M))|F}]V 1.461 + + 13 NaN NaN 112612.8 NaN 13798 3438 17230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17240 72.734 NaN 1219100 35 0 174420 0.327 + 6146 FPEHIFPAL 9 87 535.7874980933541 1069.560443253508 2 535.7872924804688 MULTI HCD FTMS 0 0 0 17239 483056.53125 0.03340900067667787 28 -0.7746200561523438 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 64.23631603340823 0.01165516075559909 1 {I|L}{M(Oxidation (M))|F}PA{I|L} 5 4 44.53 0 0 4.1634 0 0 510.22407729316564 0 510.22407729316564 0 20.361256811723045 0 0 0 1.3807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}PA{I|L} 4.1634 + + 1186 NaN NaN 265021.6 NaN 13799 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17241 72.738 NaN 763830 35 0 84742 0.261 + 31842 VYMIRVYLL 9 79 593.338948205577 1184.663343477954 2 593.3389282226562 MULTI HCD FTMS 0 0 0 17239 346963.90625 0.8574616032863719 -1 0.0287322998046875 2 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 74.42276476219924 0.007657080072768255 1 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 83.109 0 0 7.0154 7.0154 88.494 0 0 0 16.31559999683283 16.478174818886373 16.31559999683283 8.010299956639813 0 2.548455006504028 1.3010299956639813 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}VY{I|L};[Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}Y{I|L}V;[YV]{M(Oxidation (M))|F}V[R{I|L}]Y{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}R{I|L}YV{I|L} 7.0154;6.3393;6.1487;5.8525;5.8525;5.6382;5.4725;5.4498;5.4111;4.9858 +;-;-;-;-;-;-;-;-;- + 1243 NaN NaN 196561.8 NaN 13800 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17242 72.742 NaN 314520 35 0 38739 0.261 + 18414 MPSVPDFETL 10 63 576.2685579589004 1150.5225629846007 2 576.268310546875 MULTI HCD FTMS 0 0 0 17239 154929.359375 0.7435031350471646 3 -0.078460693359375 3 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 65.23502041540118 0.023231415588018726 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L} 10 0 + 54.398 0 0 4.7281 4.7281 84.766 0 0 0 3.0673364817872084 25.804074772359016 3.0673364817872084 8.762874945799766 0 1.5 0 1.274227503252014 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}ET{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}VP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[W{I|L}][MD]VP{M(Oxidation (M))|F} 4.7281;3.9664;2.0319;0.44531 +;-;-;- + 214 NaN NaN 130763.8 NaN 13801 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17243 72.745 NaN 597770 35 0 72552 0.261 + 22653 QWKRMQYVP 9 81 618.3213634677372 1234.6281740022744 2 618.3216552734375 MULTI HCD FTMS 0 0 0 17239 113042.1171875 0.019307971005364678 32 -0.8827667236328125 4 Unmodified _QWKRMQYVP_ REV__ENST00000531863.5_1_11:66276783-66276999:+|nuORF 21.74664581756881 0.17247014374749275 1 [YT]{I|L}Q 4 -1 36.682 0 0 2.9711 0 0 0 726.35266676034 726.35266676034 17.122373501501627 0 0 0 0 1.5 2 0 0 [YT]{I|L}Q 2.9711 - 584 NaN NaN 174392.4 NaN 13802 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17244 72.748 NaN 469730 35 0 63825 0.262 + 19390 NPFHLELAL 9 64 527.2901564449884 1052.5657599567767 2 528.2742309570312 MULTI HCD FTMS 0 0 0 17239 38506.453125 1 0 0 5 Unmodified _NPFHLELAL_ ENSG00000155561|ENST00000285968|NUP205 9.38312468134398 0.279288223203164 1 V{I|L}T{[CP]|[EA]}[NP]{M(Oxidation (M))|F} 8 8 35.239 0 0 3.3479 0 0 163.1115200478401 0 163.1115200478401 0 20.58037176564042 0 0 0 0 0 0.6989700043360187 0.7614393726401688 V{I|L}T{[CP]|[EA]}[NP]{M(Oxidation (M))|F} 3.3479 - 266 + NaN NaN 146942.5 NaN 13803 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17245 72.752 NaN 806140 35 0 194810 0.261 + 21625 PYPQYFTQL 9 82 578.7878928549109 1155.5612327766216 2 578.7877807617188 MULTI HCD FTMS 0 0 0 17239 216507.859375 0.28685879573695605 -4 0.11385345458984375 6 Unmodified _PYPQYFTQL_ ENSG00000103160|ENST00000219439|HSDL1 63.960520009940105 0.0120409805053046 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L} 9 0 + 58.623 0 0 5.0731 5.0731 84.575 0 0 0 8.529543537615183 38.93053421393809 8.529543537615183 6.817496819840656 0 1.555462187404089 1.3010299956639813 0.6747425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}T[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}T[AG]{I|L};[Y{I|L}]WW{[ET]|[MV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{[ET]|[MV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.0731;4.4832;4.2763;3.6863;0.98311;0.67834 +;-;-;-;-;- + 445 NaN NaN 217860.8 NaN 13804 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17246 72.755 NaN 215370 35 0 33011 0.261 + 1734 CKKQHQFL 8 54 516.2758120328997 1030.5370711325993 2 516.2756958007812 MULTI HCD FTMS 0 0 0 17239 54131.87109375 0.5705476908432461 -3 0.08771514892578125 7 Unmodified _CKKQHQFL_ REV__ENSG00000115221|ENST00000283249|ITGB6;REV__ITGB6-RBMS1|1|fusion;REV__ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;REV__nc|ENSG00000115221|P18564-2|ITGB6 13.50788311687929 0.4944073034352369 1 D{I|L}{I|L} 3 -1 30.674 0 0 2.9765 0 0 671.3326893537125 0 671.3326893537125 0 15.96910013008056 0 0 0 0.9247425010840047 0 0 0 D{I|L}{I|L} 2.9765 - 27 NaN NaN 109875 NaN 13805 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17247 72.758 NaN 98808 35 0 8259.9 0.262 + 33 AALALRPM 8 53 421.75138183200454 NaN 0 421.7513427734375 PEAK HCD FTMS 0 0 0 17239 20153.349609375 0.30675644468533975 -4 0.11385345458984375 8 Unmodified _AALALRPM_ REV__ENSG00000198535|ENST00000355522|C2CD4A 2.577480529830294 0.38822285293237185 1 H 1 -1 3.0989 0 0 0.36827 0 0 539.3502845606904 162.05608545474846 701.4063700154388 0 0 0 0 0 0 0 0 0 H 0.36827 - 4 + NaN NaN 102720.8 NaN 13806 3439 17239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17249 72.763 NaN 1035500 35 0 294600 0.327 + 5774 FPANVMDVI 9 60 511.2549282412626 1020.4953035493252 2 511.2549133300781 MULTI HCD FTMS 0 0 0 17248 574125.5625 0.7321786294117286 -2 0.05823516845703125 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 47.748688679222035 0.03472022231463587 1 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 5 + 66.137 0 0 6.4808 6.4808 94.041 0 0 0 12.76679965628567 42.57999250452839 12.76679965628567 66.13651120157711 0 0.8807196863200843 1.5228787452803376 0.28872548999643577 0.3807196863200844 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 6.4808 - 236 NaN NaN 237431.3 NaN 13807 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17250 72.768 NaN 832840 35 0 154440 0.261 + 23440 RLPLRLFLI 9 91 570.8847232682322 1139.7548936032642 2 570.8846435546875 MULTI HCD FTMS 0 0 0 17248 398314.40625 0.7238590783851694 2 -0.04895782470703125 2 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 64.23631603340823 0.01165516075559909 1 {I|L}R{I|L}PR 5 6 50.411 0 0 4.423 0 0 0 501.3072603815063 501.3072603815063 25.99870919993088 0 0 0 0 1.1989700043360187 1.0969100130080565 0 0.3807196863200844 {I|L}R{I|L}PR 4.423 - 148 + NaN NaN 219838.4 NaN 13808 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17251 72.771 NaN 1234900 35 0 93473 0.261 + 11420 IYPTTYVQF 9 111 566.2887404999749 1130.5629280667497 2 566.2882690429688 MULTI HCD FTMS 0 0 0 17248 464941.3125 0.8117464277284806 -2 0.05823516845703125 3 Unmodified _IYPTTYVQF_ ENSG00000179820|ENST00000391770|MYADM 96.11092074494114 0.00436583732602279 1 [Y{I|L}]PTTYVQ{M(Oxidation (M))|F} 9 0 [Y{I|L}] + + 56.489 16.734 6.0598 4.9965 4.9965 61.606 0 0 0 0 12.19273760456403 0 0 0 2.1989700043360187 0 0.25 0.6549471895720984 + + [Y{I|L}]PTTYVQ{M(Oxidation (M))|F} 4.9965 + + 2136 + NaN NaN 278283.8 NaN 13809 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17252 72.774 NaN 1337600 35 0 493740 0.264 -1 0 63 413.1934236862167 824.3722944392334 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17248 555677.1875 0.4189497835236729 -8 0.22183990478515625 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.4064 0 0 659.2929315015366 0 659.2929315015366 0 4.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4064 - 13 + NaN NaN 284829.8 NaN 13810 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17253 72.778 NaN 490090 35 0 75055 0.261 + -1 TCYGWVCL 8 76 501.2145194394364 1000.4144859456728 2 501.21478271484375 MULTI HCD FTMS 0 0 0 17248 143127.859375 0.8100324404436873 -1 0.02950286865234375 5 Carbamidomethyl (C) _TC(Carbamidomethyl (C))YGWVCL_ REV__DKK3|p.H194Y|1|0.28|ENSG00000050165|chr11:11967047-11967047|G/A|missense_variant 10.183394434864962 0.5188676124868831 1 {M(Oxidation (M))|F}A{I|L} 3 -1 33.5 0 0 3.3486 0 0 651.2134339171082 0 651.2134339171082 0 13.145359128556251 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}A{I|L} 3.3486 - 260 NaN NaN 175894.8 NaN 13811 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17254 72.781 NaN 938790 35 0 72497 0.261 + 34479 YPFIIDAHL 9 84 544.7927482550663 1087.5709435769325 2 544.7925415039062 MULTI HCD FTMS 0 0 0 17248 224838.921875 0.27439437439408837 -3 0.08104705810546875 6 Unmodified _YPFIIDAHL_ ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10 131.29775728308752 0.0005262696486345744 1 YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L} 9 0 + 107.67 0 0 9.9004 9.9004 96.28 0 0 0 59.34955642535897 6.751736484954378 6.751736484954378 16.505149978319906 0 3.004432191740108 2 1.079689690656103 0 + + YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L}DAH{I|L};YP{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}E{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}E{I|L}{M(Oxidation (M))|F}{I|L} 9.9004;8.3828;7.5818;7.0933;6.7073;6.7028;6.6782;6.2686;6.2143;5.7797 +;+;-;-;-;-;-;-;-;- + 950 + NaN NaN 227089.5 NaN 13812 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17255 72.784 NaN 269940 35 0 36087 0.261 -1 0 69 522.2533599371761 521.2460834705761 1 523.2638549804688 MULTI HCD FTMS 0 0 0 17248 9682.041015625 1 0 0 7 NaN NaN 1 S 1 -1 6.9897 0 0 1.341 0 0 78.00795575502981 353.18279612349875 431.19075187852854 0 0 0 0 0 0 0 0 0 S 1.341 - 9 + NaN NaN 117842.1 NaN 13813 3440 17248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17257 72.789 NaN 4081400 35 0 707990 0.327 + 30867 VQPRNWLLF 9 114 586.8324733058458 1171.6503936784916 2 586.8325805664062 MULTI HCD FTMS 0 0 0 17256 2762071.5 0.7109115273945446 -2 0.05568695068359375 1 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 96.28474662873226 0.004361282420133734 1 {[QV]|[N{I|L}]|[RA]|[KV]}PGVNW{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 78.637 0 0 6.7116 6.7116 64.591 0 0 0 2.750374958336465 2.750374958336465 2.750374958336465 0 0 2.332129649978392 0.9208187539523752 0 0.9731975075880328 {[QV]|[N{I|L}]|[RA]|[KV]}PGVNW{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PGVWN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PRNW{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PRWN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PGVW{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PRW{I|L}N{I|L}{M(Oxidation (M))|F};VQRPHY{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PGVWQV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}PRWQV{I|L}{M(Oxidation (M))|F};VQPRHY{I|L}{I|L}{M(Oxidation (M))|F} 6.7116;6.7116;6.668;6.668;6.606;6.5624;6.4769;6.4171;6.3735;6.2304 -;-;+;-;-;-;-;-;-;- + 8480 NaN NaN 667803 NaN 13814 3441 17256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17258 72.794 NaN 2436900 35 0 604580 0.261 + 27276 SYPTFFPRF 9 96 581.2908099923261 1160.567067051452 2 581.2904052734375 MULTI HCD FTMS 0 0 0 17256 823334.4375 0.41467869317207057 7 -0.19991302490234375 2 Unmodified _SYPTFFPRF_ ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF 61.60191391372663 0.015340508911304802 1 {[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}M[R{I|L}] 9 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 43.523 3.7236 1.4889 3.7502 3.7502 59.821 0 0 0 0 16.44450247156351 0 0 0 1.829689690656103 0 0.4247425010840047 0.3054621874040891 {[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}M[R{I|L}] 3.7502 - 1473 + NaN NaN 459567.1 NaN 13815 3441 17256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17259 72.797 NaN 847750 35 0 130300 0.261 + 8089 GIYPHFLSF 9 78 540.7775311534505 1079.5405093737008 2 540.779541015625 MULTI HCD FTMS 0 0 0 17256 255509.8125 0.7880243025226314 -2 0.05568695068359375 3 Unmodified _GIYPHFLSF_ REV__ENST00000504897.2_1_5:140053125-140053497:+|nuORF 24.67388899826682 0.14717941214954053 1 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 4 -1 44.412 0 0 4.114 0 0 567.2823963849625 0 567.2823963849625 0 16.273976811741534 0 0 0 1.0752574989159953 0 0.7742275032520141 0 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 4.114 - 532 NaN NaN 218471.6 NaN 13816 3441 17256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17260 72.801 NaN 307340 35 0 37016 0.261 + 6970 FPVRLSVYL 9 73 547.3237965347438 1092.6330401362875 2 547.3236083984375 MULTI HCD FTMS 0 0 0 17256 58112.38671875 0.3905373626915965 1 -0.02277374267578125 4 Unmodified _FPVRLSVYL_ ENSG00000166012|ENST00000448108|TAF1D 34.93206674587334 0.08860942999206235 1 VY{I|L} 3 6 31.198 0 0 2.8553 0 0 699.408006736525 0 699.408006736525 0 5 0 0 0 0.5 0 0 0 + VY{I|L} 2.8553 + + 80 NaN NaN 137103.6 NaN 13817 3441 17256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17261 72.804 NaN 336160 35 0 59340 0.261 + 4699 EYPKIRTF 8 58 527.2901564449884 1052.5657599567767 2 527.2898559570312 MULTI HCD FTMS 0 0 0 17256 76787.2421875 0.5348592392770669 4 -0.10794830322265625 5 Unmodified _EYPKIRTF_ ENSG00000119636|ENST00000394009|BBOF1;ENST00000492026.4_1_14:74507337-74544940:+|nuORF 13.50788311687929 0.4944073034352369 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TT{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}A 8 7 37.224 0 0 3.5365 0 0 0 128.07059712409537 128.07059712409537 17.53083433768431 0 0 0 0 0.8807196863200843 1.3010299956639813 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TT{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}A 3.5365 - 130 NaN NaN 143261.6 NaN 13818 3441 17256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17262 72.807 NaN 282880 35 0 11924 0.261 + 7014 FPYKDDLLAL 10 79 597.8229400640294 1193.6313271948586 2 597.8231811523438 MULTI HCD FTMS 0 0 0 17256 105278.8359375 0.3867840527884509 8 -0.22927093505859375 6 Unmodified _FPYKDDLLAL_ ENSG00000068697|ENST00000175091|LAPTM4A 13.614867670302875 0.3837631382804675 1 A[WE]V{I|L}{I|L}A{I|L} 8 6 32.133 0 0 2.692 0 0 280.10569960761876 0 280.10569960761876 0 21.67525978212624 0 0 0 0.5 0 0.3054621874040891 0 A[WE]V{I|L}{I|L}A{I|L} 2.692 - 354 NaN NaN 125802.1 NaN 13819 3441 17256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17264 72.812 NaN 6238800 35 0 785320 0.327 + 24209 RYFLPPYTF 9 92 602.3135920149654 1202.6126310967306 2 603.3161010742188 MULTI HCD FTMS 0 0 0 17263 1597756.5 0.5802850258380594 -6 0.16617584228515625 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 49.93300154707207 0.03166451819912738 1 TT[WK]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}T] 9 4 39.164 0 0 3.2566 0 0 63.01544322888282 0 63.01544322888282 0 20.937741017067587 0 0 0 1.2302046884880937 0 1.8243923658886185 0 TT[WK]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}T] 3.2566 - 1768 + NaN NaN 568752.2 NaN 13820 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17265 72.816 NaN 1252600 35 0 148370 0.261 + 33938 YLRTSNLQE 9 96 562.2920278601487 1122.5695027870972 2 562.8108520507812 MULTI HCD FTMS 0 0 0 17263 33750.84375 0.5142146442527059 -8 0.2184600830078125 2 Unmodified _YLRTSNLQE_ ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 19.256988751693697 0.19398022840297344 1 [Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}Y 8 7 47.344 0 0 4.2175 0 0 0 113.01835193303887 113.01835193303887 12.083428324247123 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}Y 4.2175 - 1850 NaN NaN 271576.6 NaN 13821 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17266 72.82 NaN 449340 35 0 49382 0.261 + 29296 TYMETYVYF 9 72 616.7633033229139 1231.5120537126277 2 616.7627563476562 MULTI HCD FTMS 0 0 0 17263 274088.90625 0.9539549533009535 -6 0.16617584228515625 3 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ ENSG00000013563|ENST00000369807|DNASE1L1 67.34385681178166 0.00994769994983633 1 TYVY{M(Oxidation (M))|F} 5 4 67.321 0 0 5.4665 0 0 540.1887074201187 0 540.1887074201187 0 57.14333124107817 0 0 0 1.75 0 1.5356668758921828 0 + TYVY{M(Oxidation (M))|F} 5.4665 + + 233 NaN NaN 150801 NaN 13822 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17267 72.823 NaN 283060 35 0 29882 0.263 -1 DDLMPINL 8 59 473.7313118513415 945.448070769483 2 473.73114013671875 MULTI HCD FTMS 0 0 0 17263 169198.609375 0.8980552012252159 -6 0.16617584228515625 4 Oxidation (M) _DDLM(Oxidation (M))PINL_ ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B 28.486842064014134 0.3788298654084067 1 {I|L}N{I|L} 3 -1 33.5 0 0 3.5433 0 0 587.2263068941968 0 587.2263068941968 0 15.541134294324124 0 0 0 0.3807196863200844 0 0 0.3494850021680094 {I|L}N{I|L} 3.5433 + + 75 NaN NaN 132065.2 NaN 13823 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17268 72.827 NaN 139600 35 0 10377 0.261 + -1 ECTYICELAI 10 52 636.2863226989032 1270.5580924646063 2 636.2864990234375 MULTI HCD FTMS 0 0 0 17263 46571.21484375 0.38601015819699125 8 -0.22603607177734375 5 2 Carbamidomethyl (C) _EC(Carbamidomethyl (C))TYIC(Carbamidomethyl (C))ELAI_ REV__ENSG00000151779|ENST00000281513|NBAS;REV__nc|ENSG00000151779|A2RRP1-2|NBAS 3.5964929083625545 0.45626689593999237 1 A{I|L} 2 -1 22.959 0 0 1.807 0 0 1068.42244153667 0 1068.42244153667 0 19.85985638199878 0 0 0 0.3494850021680094 0 0 0 A{I|L} 1.807 + + 11 NaN NaN 119248.7 NaN 13824 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17269 72.83 NaN 762130 35 0 60921 0.263 + 4493 EYIRPFAI 8 84 504.7795251509385 1007.5444973686771 2 504.77972412109375 MULTI HCD FTMS 0 0 0 17263 130614.875 1 0 0 6 Unmodified _EYIRPFAI_ REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 20.453626601364224 0.4433031943603284 1 EV{I|L}{I|L} 4 -1 25.662 0 0 2.547 0 0 0 550.2536919151912 550.2536919151912 0.44531259372398324 0 0 0 0 0 0 0 0 EV{I|L}{I|L} 2.547 - 508 + NaN NaN 203910.6 NaN 13825 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17270 72.833 NaN 168460 35 0 41176 0.261 -1 0 39 645.4184832685178 644.4112068019177 1 645.4183349609375 MULTI HCD FTMS 0 0 0 17263 103285.75 0.9039005506579316 4 -0.11128997802734375 7 NaN NaN 1 V{I|L} 2 -1 20.969 0 0 3.254 0 0 414.2467518537125 0 414.2467518537125 0 13.979400086720375 0 0 0 0 0 0 0 V{I|L} 3.254 - 3 NaN NaN 126013 NaN 13826 3442 17263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17272 72.838 NaN 3871700 35 0 827430 0.327 + 29902 VFDPKVFTF 9 92 550.295004149522 1098.575455365844 2 550.2950439453125 MULTI HCD FTMS 0 0 0 17271 2748083 0.959703702177454 1 -0.03279876708984375 1 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 121.34585337138759 0.001129813327125052 1 V{M(Oxidation (M))|F}DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 113.66 0 0 10.346 10.346 92.624 0 0 0 67.47454240246226 16.478174818886373 16.478174818886373 7.838096733120281 0 3.079689690656103 0 2.205112052208703 0 + + V{M(Oxidation (M))|F}DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}VDPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKVT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPK{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKTV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPK{M(Oxidation (M))|F}TV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10.346;9.6327;7.0019;6.5159;6.2931;6.1125;6.1125;5.9958;5.9238;5.6265 +;-;+;-;-;-;-;-;-;- + 1119 + NaN NaN 564561.2 NaN 13827 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17273 72.843 NaN 862050 35 0 155600 0.261 -1 0 87 622.2948358044622 1242.5751186757243 2 622.294677734375 MULTI HCD FTMS 0 0 0 17271 418293.375 0.2303806725013621 14 -0.406158447265625 2 NaN NaN 1 YY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 6 -1 53.621 0 0 4.3153 0 0 328.14305312324376 0 328.14305312324376 0 30.064119211036626 0 0 0 1.6989700043360187 0 0 0 YY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.3153 - 2269 NaN NaN 237179.6 NaN 13828 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17274 72.846 NaN 1593700 35 0 447000 0.262 + 23314 RISLPLPNF 9 75 528.8138732709568 1055.6131936087136 2 528.813720703125 MULTI HCD FTMS 0 0 0 17271 470500.375 0.36144552744645564 -5 0.13339996337890625 3 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 59.05245873256422 0.018907022117377846 1 [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F} 9 0 + 75.473 0 0 7.1497 7.1497 90.056 0 0 0 0.3763571332443547 64.02040331657425 0.3763571332443547 9.208187539523749 0 2.9604093769761874 0 0.3807196863200844 0 + + [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}PGG{M(Oxidation (M))|F};[R{I|L}]S{I|L}P[QP]V{M(Oxidation (M))|F} 7.1497;6.2774;3.2607 +;-;- + 528 NaN NaN 324560.9 NaN 13829 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17275 72.85 NaN 708970 35 0 64122 0.261 + 19756 NYAWVYYHL 9 82 614.7929287250602 1227.5713045169202 2 614.7927856445312 MULTI HCD FTMS 0 0 0 17271 269538.75 0.004803739919745056 132 -3.1822891235351562 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 111.81 0 0 9.108 9.108 97.125 0 0 0 31.735162698957282 16.478174818886373 16.478174818886373 31.863044005075736 0 2.7302046884880937 1.6989700043360187 0 1.892159058960253 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]R{I|L};[YN][VS][W{M(Oxidation (M))|F}]YH{I|L};[MT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[HA]YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}V[HA]YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]{M(Oxidation (M))|F}[HA]YH{I|L};[YN][VS][WH]{I|L}[Y{M(Oxidation (M))|F}];{[YD]|[{M(Oxidation (M))|F}M]}QQV[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]R{I|L} 9.108;6.5124;3.9002;2.3073;1.3879;1.3754;1.2217;1.0137;0.80163;0.67902 +;-;-;-;-;-;-;-;-;- + 717 NaN NaN 206218.6 NaN 13830 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17276 72.853 NaN 1006600 35 0 64329 0.261 -1 TYIYIQKCF 9 103 618.3109299649154 1234.6073069966308 2 618.313232421875 MULTI HCD FTMS 0 0 0 17271 171379.421875 0.7790123659340318 -2 0.048980712890625 5 Carbamidomethyl (C) _TYIYIQKC(Carbamidomethyl (C))F_ ENST00000383746.7_2_3:44396236-44396287:+|nuORF 32.30548876998284 0.10066689432505688 1 [YT]{I|L}Q[HS]QV{I|L}{M(Oxidation (M))|F} 10 -1 + 56.938 0 0 4.6119 4.6119 84.911 0 0 0 8.750904927978794 6.427652106879535 6.427652106879535 9.164539485499262 0 0.5 2 0.28872548999643577 0.6989700043360187 [YT]{I|L}Q[HS]QV{I|L}{M(Oxidation (M))|F};[YT]{I|L}Q[HS][AG]V{I|L}{M(Oxidation (M))|F};[YT]{I|L}[AG][HS]QV{I|L}{M(Oxidation (M))|F};[YT]{I|L}Q[HS]Q{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}Q{[QD]|[EN]|[WG]|[KD]|[RS]}[HA]{I|L}{M(Oxidation (M))|F};[YT]{I|L}[AG][HS]Q{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}Q[HS][AG]{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}Q[HS][VP][YQ];[YT]{I|L}[WK]NYT{M(Oxidation (M))|F};[YT]{I|L}[WK]NTY{M(Oxidation (M))|F} 4.6119;3.8696;3.8696;3.4927;3.1726;2.7504;2.7504;2.5618;2.523;2.4367 -;-;-;-;-;-;-;-;-;- 1471 NaN NaN 242030.3 NaN 13831 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17277 72.856 NaN 197110 35 0 51330 0.262 + 7558 FYDACPTVI 9 45 514.7416564136945 1027.468759894189 2 514.7415771484375 MULTI HCD FTMS 0 0 0 17271 60480.46875 0.5149814602682973 -5 0.13339996337890625 6 Unmodified _FYDACPTVI_ REV__ENSG00000180815|ENST00000338883|MAP3K15;REV__MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant 3.944395688203298 0.32111559684428237 1 V{I|L} 2 -1 19.464 0 0 1.8944 0 0 797.302049705275 0 797.302049705275 0 3.979400086720375 0 0 0 0 0 0 0 V{I|L} 1.8944 + + 9 NaN NaN 114350.6 NaN 13832 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17278 72.86 NaN 302820 35 0 39615 0.261 + -1 NYPVPHCLLF 10 76 630.3157054658765 1258.6168579985529 2 630.3173828125 MULTI HCD FTMS 0 0 0 17271 79467.59375 0.7105979840296158 2 -0.05896759033203125 7 Carbamidomethyl (C) _NYPVPHC(Carbamidomethyl (C))LLF_ REV__ENSG00000101353|ENST00000343811|MROH8;REV__nc|ENSG00000101353|Q9H579-2|MROH8;REV__nc|ENSG00000101353|Q9H579|MROH8 26.88365393820708 0.25965138844209146 1 [YN]{I|L}{M(Oxidation (M))|F}RW{I|L}T{M(Oxidation (M))|F} 9 -1 + 67.933 0 0 5.3974 5.3974 88.724 0 0 0 15.251539332962594 8.710149894766701 8.710149894766701 12.972287753157516 0 1.6307196863200843 1.5228787452803376 0.4247425010840047 1 [YN]{I|L}{M(Oxidation (M))|F}RW{I|L}T{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}RW[DV]{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}TQ{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}TQT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}[VG]{[DA]|[EG]}{I|L}T{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}[PS]{[SA]|[TG]}{I|L}T{M(Oxidation (M))|F};[YN]{I|L}{I|L}{I|L}T[AG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}{I|L}{I|L}T[AG]T{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN][YT]T{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.3974;4.3667;4.1856;4.0244;3.9377;3.9275;3.4575;3.4432;3.2963;3.0703 -;-;-;-;-;-;-;-;-;- 838 NaN NaN 123007.9 NaN 13833 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17279 72.863 NaN 154180 35 0 14514 0.261 + 32451 WDSEEEWLW 9 50 640.2653991888378 1278.5162454444755 2 640.26513671875 MULTI HCD FTMS 0 0 0 17271 105818.9609375 1 0 0 8 Unmodified _WDSEEEWLW_ ENST00000396037.8_1_12:22408231-22408294:-|nuORF 12.531546534597751 0.2520865569484384 1 {I|L}W 2 7 30.969 0 0 2.4223 0 0 961.3425526727943 0 961.3425526727943 0 12.552725051033061 0 0 0 1 0 0 0 + {I|L}W 2.4223 + + 31 + NaN NaN 105115 NaN 13834 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17280 72.866 NaN 187370 35 0 31804 0.261 + 34755 YPYQYPGPPP 10 69 589.7784209795873 1177.5422890259745 2 589.7786865234375 MULTI HCD FTMS 0 0 0 17271 90334.59375 1 0 0 9 Unmodified _YPYQYPGPPP_ ENSG00000107404|ENST00000378888|DVL1;nc|ENSG00000107404|O14640-2|DVL1 11.640296217721598 0.4022326134240651 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y 3 7 30.062 0 0 2.5529 0 0 0 751.3395967254463 751.3395967254463 19.604093769761874 0 0 0 0 0.5 2 0 0 + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y 2.5529 + + 40 NaN NaN 117972.8 NaN 13835 3443 17271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17282 72.871 NaN 9844500 35 0 2107700 0.327 + 24210 RYFLPPYTF 9 84 602.3135920149654 1202.6126310967306 2 602.3140869140625 MULTI HCD FTMS 0 0 0 17281 5763984.5 0.5413075900374719 -4 0.10796356201171875 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 96.11092074494114 0.00436583732602279 1 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 84.491 0 0 7.0256 7.0256 93.071 0 0 0 10.034897615156865 52.65969271499499 10.034897615156865 21.83245786403321 0 2.274227503252014 0 0.4247425010840047 0.28872548999643577 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}PPTY{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}KAA{[TV]|[{I|L}S]}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F}{I|L}RY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}RY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}P{I|L}RY{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}KAA{[DS]|[MA]|[CV]|TT}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F}{I|L}RY{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}AAK{[TV]|[{I|L}S]}T{M(Oxidation (M))|F} 7.0256;5.2102;3.9026;3.512;2.6865;2.6568;2.5141;2.4385;2.248;2.1809 +;-;-;-;-;-;-;-;-;- + 1442 NaN NaN 803338.3 NaN 13836 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17283 72.876 NaN 1795800 35 0 377990 0.261 + 27232 SYNPLWLRI 9 99 581.3243067189838 1160.6340605047676 2 581.32470703125 MULTI HCD FTMS 0 0 0 17281 297744.46875 0.055386617163473546 11 -0.32117462158203125 2 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 89.40071534611396 0.0045416704840156395 1 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L} 9 0 + 47.075 0 0 4.056 4.056 84.826 0 0 0 21.443481302951277 9.889917747712644 9.889917747712644 9.208187539523749 0 2.024227503252014 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}WR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}{I|L}WR{I|L};[Y{M(Oxidation (M))|F}]A{I|L}{[YC]|[HE]}{I|L}R{I|L} 4.056;3.2626;2.8284;2.035;2.0182 +;-;-;-;- + 1665 + NaN NaN 375830 NaN 13837 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17284 72.879 NaN 499190 35 0 112720 0.261 + 6082 FPEELTQTF 9 66 556.2691904854104 1110.5238280376207 2 557.2901611328125 MULTI HCD FTMS 0 0 0 17281 18749.15234375 0.1324293901472273 21 -0.591461181640625 3 Unmodified _FPEELTQTF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 29.081581746732265 0.1154664336125038 1 E{M(Oxidation (M))|F}P{[QN]|[E{I|L}]|[KN]}TQT{M(Oxidation (M))|F} 9 2 + 49.121 0 0 4.4233 4.4233 85.321 0 0 0 18.203709116377667 15.500671555173824 15.500671555173824 9.208187539523749 0 0.3807196863200844 0 0.3252574989159953 0 E{M(Oxidation (M))|F}P{[QN]|[E{I|L}]|[KN]}TQT{M(Oxidation (M))|F};E{M(Oxidation (M))|F}P{[QN]|[E{I|L}]|[KN]}T[AG]T{M(Oxidation (M))|F} 4.4233;3.5941 -;- 475 + NaN NaN 152059 NaN 13838 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17285 72.882 NaN 378200 35 0 37165 0.264 -1 PDGSSKGC 8 56 404.16961921983085 806.3246855064617 2 404.1700744628906 MULTI HCD FTMS 0 0 0 17281 210836.953125 0.020465241843560165 33 -0.912384033203125 4 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 {I|L}[EP] 3 -1 3.9524 0 0 0.49018 0 0 449.15413100410314 0 449.15413100410314 0 3.239087409443186 0 0 0 0 0 0 0 {I|L}[EP] 0.49018 - 2 NaN NaN 141648.8 NaN 13839 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17286 72.886 NaN 305610 35 0 63173 0.261 + 33413 YGRTQMTLTF 10 58 609.3030957622709 1216.5916385913417 2 609.3016967773438 MULTI HCD FTMS 0 0 0 17281 196180.171875 0.8314642568931134 -6 0.16619873046875 5 Unmodified _YGRTQMTLTF_ ENSG00000029639|ENST00000367166|TFB1M 7.608950283845883 0.4350283211712914 1 T{M(Oxidation (M))|F} 2 8 29.464 0 0 2.4218 0 0 950.466112205275 0 950.466112205275 0 14.014005407815445 0 0 0 0.5 0 0.3494850021680094 0 + T{M(Oxidation (M))|F} 2.4218 + + 62 NaN NaN 124226.2 NaN 13840 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17287 72.889 NaN 205400 35 0 10384 0.261 + 13186 KYLTEGLLQF 10 65 606.3372036148426 1210.659854296485 2 606.33642578125 MULTI HCD FTMS 0 0 0 17281 10697.9638671875 0.0022089103688307404 42 -1.1706161499023438 6 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 8.444304893310646 0.4306066564229251 1 K{M(Oxidation (M))|F}{I|L}YS{I|L}{M(Oxidation (M))|F} 7 6 33.665 0 0 2.7807 0 0 294.1576674216413 0 294.1576674216413 0 18.729494892538696 0 0 0 0 0 0 0 K{M(Oxidation (M))|F}{I|L}YS{I|L}{M(Oxidation (M))|F} 2.7807 - 147 NaN NaN 111511.3 NaN 13841 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17288 72.892 NaN 261550 35 0 28063 0.261 + 21635 PYPVLFHNIF 10 63 623.8346853702029 1245.6548178072057 2 625.3394775390625 MULTI HCD FTMS 0 0 0 17281 9096.9326171875 0.41016384610358264 1 -0.0261688232421875 7 Unmodified _PYPVLFHNIF_ ENST00000506539.5_1_5:65018131-65088776:+|nuORF 4.3292370932331545 0.45238836448149167 1 T{I|L} 2 9 7.9588 0 0 0.63893 0 0 62.105916691004104 966.3969708018467 1028.5028874928507 0 0 0 0 0 0 0 0 0 T{I|L} 0.63893 - 127 + NaN NaN 136471.4 NaN 13842 3444 17281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17290 72.897 NaN 1140100 35 0 295820 0.327 -1 FPANVMDVI 9 73 511.2549282412626 1020.4953035493252 2 511.2548522949219 MULTI HCD FTMS 0 0 0 17289 616052 0.7856471449245986 3 -0.0919647216796875 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 34.40172386719151 0.0910440009062557 1 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 -1 + 58.989 0 0 5.7804 5.7804 86.433 0 0 0 8.349169661730542 16.40978057358332 8.349169661730542 8.349169661730542 0 0.8494850021680094 1.6989700043360187 0.3054621874040891 0.3494850021680094 [DV][WK]{M(Oxidation (M))|F}DV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}{M(Oxidation (M))|F}DV{I|L};[DV][WK]{M(Oxidation (M))|F}[{I|L}V]D;{[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}{M(Oxidation (M))|F}[{I|L}V]D 5.7804;4.9623;2.5688;1.7507 -;-;-;- 480 NaN NaN 256881.1 NaN 13843 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17291 72.902 NaN 1616900 35 0 357920 0.261 + 21626 PYPQYFTQL 9 97 578.7878928549109 1155.5612327766216 2 578.7877197265625 MULTI HCD FTMS 0 0 0 17289 572752.3125 0.7588594663195779 2 -0.06221771240234375 2 Unmodified _PYPQYFTQL_ ENSG00000103160|ENST00000219439|HSDL1 92.65332237495696 0.004456439685314431 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L} 9 0 + 63.355 0 0 5.4826 5.4826 86.126 0 0 0 13.841890379135933 33.935982761046404 13.841890379135933 9.035984316004217 0 1.610924374808178 1.3010299956639813 0.6861818737241735 0.2302046884880938 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}T[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{M(Oxidation (M))|F}TQ{I|L};[QP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}TQ{I|L};[QP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{M(Oxidation (M))|F}T[AG]{I|L};[Y{I|L}]Y[DV]WGQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}[SG]VV 5.4826;4.7007;4.6858;3.9038;3.7161;3.7161;2.9192;2.9192;2.7827;2.726 +;-;-;-;-;-;-;-;-;- + 908 NaN NaN 321548.7 NaN 13844 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17292 72.905 NaN 944480 35 0 127540 0.261 + 6147 FPEHIFPAL 9 83 535.7874980933541 1069.560443253508 2 535.787353515625 MULTI HCD FTMS 0 0 0 17289 385146.96875 0.02663741095952562 34 -0.9485092163085938 3 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 57.47134341890925 0.0211188941628804 1 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 8 4 43.237 0 0 4.0425 0 0 165.07872206855626 0 165.07872206855626 0 21.34212286040281 0 0 0 1.7059771852360797 0 0.6747425010840047 0 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 4.0425 - 967 NaN NaN 225102.2 NaN 13845 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17293 72.909 NaN 1006000 35 0 66551 0.261 -1 TYIYIQKCF 9 100 618.3109299649154 1234.6073069966308 2 618.3097534179688 MULTI HCD FTMS 0 0 0 17289 219995.765625 1 0 0 4 Carbamidomethyl (C) _TYIYIQKC(Carbamidomethyl (C))F_ ENST00000383746.7_2_3:44396236-44396287:+|nuORF 39.957323273324995 0.06554068735427583 1 [YT]{I|L}Q 4 -1 50.049 0 0 4.0539 0 0 0 726.3379393893969 726.3379393893969 4.2657047425798 0 0 0 0 0.805462187404089 2 0 0.5796896906561032 [YT]{I|L}Q 4.0539 - 759 + NaN NaN 231683.5 NaN 13846 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17294 72.912 NaN 245010 35 0 15667 0.261 + 21676 PYYSKFILI 9 67 572.3261287977801 1142.6377046623602 2 572.8274536132812 MULTI HCD FTMS 0 0 0 17289 42656.1953125 0.018198775062211892 38 -1.0664291381835938 5 Unmodified _PYYSKFILI_ ENSG00000164815|ENST00000297431|ORC5 29.84058131909904 0.11198220037953927 1 PYYRRY 6 6 53.505 0 0 4.6826 0 0 0 241.1558779352172 241.1558779352172 35.546218740408904 0 0 0 0 1.3494850021680094 2 0 0 PYYRRY 4.6826 - 97 + NaN NaN 121802.6 NaN 13847 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17295 72.915 NaN 207520 35 0 10959 0.261 + 13379 KYNFIPEVW 9 68 598.3108638586335 1194.607174784067 2 597.8236083984375 MULTI HCD FTMS 0 0 0 17289 16747.205078125 0.5388993318757914 -3 0.085174560546875 6 Unmodified _KYNFIPEVW_ CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2 10.073929032068715 0.27331982688540024 1 W 1 8 19.604 0 0 1.641 0 0 990.5167797418779 0 990.5167797418779 0 3.713468582313906 0 0 0 0.5 0 0 0 + W 1.641 + + 184 + NaN NaN 124634.5 NaN 13848 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17296 72.918 NaN 197370 35 0 20173 0.262 + 15083 LMCCWIQF 8 60 522.229317536006 NaN 0 522.24609375 PEAK HCD FTMS 0 0 0 17289 15396.818359375 0.5167338696726208 -1 0.0261688232421875 7 Unmodified _LMCCWIQF_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|214|1|anti-sense 6.354104778181461 0.38822285293237185 1 PAN 3 8 9.6927 0 0 0.92981 0 0 147.03543944421216 610.2533663385374 757.2888057827495 0 0 0 0 0 0 0 0 0 PAN 0.92981 - 16 + NaN NaN 109321.6 NaN 13849 3445 17289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17298 72.923 NaN 1798300 35 0 677220 0.327 -1 0 61 413.1934236862167 824.3722944392334 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17297 939680.9375 0.7084673155616039 -2 0.05228424072265625 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 10.969 0 0 1.3306 0 0 659.2930535718491 0 659.2930535718491 0 0.46261525427151895 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3306 - 20 + NaN NaN 373065.8 NaN 13850 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17299 72.928 NaN 1465400 35 0 118870 0.261 + 34480 YPFIIDAHL 9 80 544.7927482550663 1087.5709435769325 2 544.7925415039062 MULTI HCD FTMS 0 0 0 17297 643153.8125 0.7849076420950984 3 -0.09520721435546875 2 Unmodified _YPFIIDAHL_ ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10 179.2298980043202 1.129651853483471E-12 1 YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L} 9 0 + 110.16 0 0 10.129 10.129 95.082 0 0 0 51.93336401071812 6.751736484954378 6.751736484954378 10.752574989159953 0 3.079689690656103 1.6989700043360187 1.7302046884880937 0 + + YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}D{I|L}[HA];YP{I|L}{M(Oxidation (M))|F}{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};YP{I|L}{M(Oxidation (M))|F}{I|L}D{I|L}[HA];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y{I|L}DAH{I|L};YP{I|L}{M(Oxidation (M))|F}{I|L}{[HG]|PP}E{I|L} 10.129;9.1404;8.9614;8.6349;7.9775;7.9728;7.2439;7.19;7.1266;6.81 +;-;-;+;-;-;-;-;-;- + 1910 + NaN NaN 317167.3 NaN 13851 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17300 72.931 NaN 552920 35 0 42267 0.261 + 11421 IYPTTYVQF 9 81 566.2887404999749 1130.5629280667497 2 566.2891845703125 MULTI HCD FTMS 0 0 0 17297 216959.453125 0.3787920245012503 4 -0.11474609375 3 Unmodified _IYPTTYVQF_ ENSG00000179820|ENST00000391770|MYADM 81.89019881105858 0.005240739447516426 1 [Y{I|L}]{I|L}SD{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 9 4 + 63.778 0 0 5.6413 5.6413 85.465 0 0 0 47.796820853264634 10.932303383713112 10.932303383713112 6.63480795672978 0 1.8252574989159953 1.154901959985743 0 0.5796896906561032 [Y{I|L}]{I|L}SD{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F};[Y{I|L}][TP]TYVQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VVTYVQ{M(Oxidation (M))|F};[Y{I|L}]{I|L}SD{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F};[Y{I|L}]{I|L}S[YT]PQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VVTYV[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VY{[TV]|[{I|L}S]}VQ{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[YD]|[{M(Oxidation (M))|F}M]}KKVQ{M(Oxidation (M))|F};{[ET]|[MV]}{[HG]|PP}[WK]VQ{M(Oxidation (M))|F};[Y{I|L}]{I|L}S[YT]P[AG]{M(Oxidation (M))|F} 5.6413;5.0544;4.5275;4.3141;4.0967;3.713;3.7071;3.2694;3.0997;3.0121 -;+;-;-;-;-;-;-;-;- + 826 + NaN NaN 177358 NaN 13852 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17301 72.935 NaN 785900 35 0 172620 0.261 + 15407 LPDIKVLTL 9 79 506.32620045275064 1010.6378479723013 2 506.3260498046875 MULTI HCD FTMS 0 0 0 17297 269184 0.545378396162725 -2 0.05228424072265625 4 Unmodified _LPDIKVLTL_ ENSG00000115241|ENST00000344034|PPM1G;ENST00000472077.1_1_2:27604468-27607956:-|nuORF 67.08073823543168 0.010032840856489532 1 [{I|L}P]D{I|L}KV{I|L}T{I|L} 9 0 + 74.809 0 0 7.4021 7.4021 87.799 0 0 0 8.350162448297667 48.994653424974715 8.350162448297667 4.731975075880328 0 2.274227503252014 1.5228787452803376 0.3807196863200844 0 + + [{I|L}P]D{I|L}KV{I|L}T{I|L};[{I|L}P]D{I|L}KVT{I|L}{I|L};[DP]{I|L}{I|L}KV{I|L}T{I|L};[DP]{I|L}{I|L}KVT{I|L}{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]V{I|L}T{I|L};[{I|L}P]{[TV]|[{I|L}S]}AA{I|L}{I|L}T{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]VT{I|L}{I|L};[{I|L}P]{[TV]|[{I|L}S]}AA{I|L}T{I|L}{I|L};[{I|L}T][VP][VG]V{I|L}T{I|L};[{I|L}T][VP]AA{I|L}{I|L}T{I|L} 7.4021;6.9339;5.2263;4.7581;3.7207;3.5012;3.2525;3.033;1.3253;1.1058 +;-;-;-;-;-;-;-;-;- + 222 NaN NaN 203422.5 NaN 13853 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17302 72.938 NaN 726190 35 0 80161 0.261 + 31843 VYMIRVYLL 9 89 593.338948205577 1184.663343477954 2 593.3387451171875 MULTI HCD FTMS 0 0 0 17297 129311.25 0.31957050791350106 6 -0.1770172119140625 5 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 71.13359017698441 0.008721403657255008 1 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 64.147 0 0 5.4148 5.4148 82.325 0 0 0 10.607346925073955 11.037202081321816 10.607346925073955 0.5676571578941036 0 2.0713337517843655 1.3010299956639813 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}V[R{I|L}]Y{I|L}{I|L};[Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L};VY{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[YV]{I|L}{M(Oxidation (M))|F}R{I|L}YV{I|L};[YV]{M(Oxidation (M))|F}VP{I|L}[HV]V{I|L} 5.4148;5.3668;4.9254;4.5194;4.4831;4.4662;4.4532;4.4183;4.4053;4.2407 +;-;-;-;+;-;-;-;-;- + 2288 NaN NaN 195950.9 NaN 13854 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17303 72.941 NaN 443790 35 0 58356 0.261 + 23441 RLPLRLFLI 9 83 570.8847232682322 1139.7548936032642 2 570.88427734375 MULTI HCD FTMS 0 0 0 17297 86978.859375 0.1580671851137213 8 -0.236083984375 6 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 34.10243960390752 0.09241788333544565 1 {I|L}R{I|L} 3 6 30.362 0 0 2.6639 0 0 0 754.4644869440061 754.4644869440061 8.959602793084827 0 0 0 0 0.2742275032520141 0 0 0.3807196863200844 + {I|L}R{I|L} 2.6639 + + 136 + NaN NaN 153093.8 NaN 13855 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17304 72.945 NaN 502720 35 0 87372 0.261 -1 VIEDVQCPDIM 11 78 639.2911799668256 1276.567807000451 2 639.2911987304688 MULTI HCD FTMS 0 0 0 17297 67016.5078125 0.7820017083841184 -2 0.05228424072265625 7 Oxidation (M) _VIEDVQCPDIM(Oxidation (M))_ ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant 20.41453444215458 0.279209903849948 1 {M(Oxidation (M))|F}EP{I|L}{I|L} 5 -1 44.24 0 0 3.4656 0 0 659.2264271466812 0 659.2264271466812 0 14.517127498657274 0 0 0 0.9247425010840047 0 0.3054621874040891 0 {M(Oxidation (M))|F}EP{I|L}{I|L} 3.4656 - 138 NaN NaN 159580.5 NaN 13856 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17305 72.948 NaN 191650 35 0 15828 0.261 + -1 FYFFMVVLN 9 58 598.2960571649429 NaN 0 598.3091430664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _FYFFM(Oxidation (M))VVLN_ REV__ENST00000370272.8_1_1:93826667-93826868:+|nuORF 5.230669730166228 0.26989974671959066 1 {I|L} 1 -1 6.9897 0 0 0.58512 0 0 311.1321465412272 767.3363131158811 1078.4684596571083 0 0 0 0 0 0 0 0 0 {I|L} 0.58512 + + 16 + NaN NaN 105110.4 NaN 13857 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17306 72.951 NaN 191180 35 0 15479 0.261 + 6179 FPELDSPQL 9 65 523.2638744842905 1044.5131960353808 2 523.2633666992188 MULTI HCD FTMS 0 0 0 17297 45091.43359375 0.313335822269745 8 -0.236083984375 9 Unmodified _FPELDSPQL_ ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF 13.042465956692817 0.2476723265019929 1 S[QP]{I|L} 4 5 28.06 0 0 2.6864 0 0 601.2733579668976 0 601.2733579668976 0 19.47621246364342 0 0 0 0.8807196863200843 0 0 0.3054621874040891 + S[QP]{I|L} 2.6864 + + 87 NaN NaN 104948.3 NaN 13858 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17307 72.955 NaN 136030 35 0 15325 0.263 + 12614 KVLVGPTE 8 67 421.75138183200454 NaN 0 421.7511291503906 PEAK HCD FTMS 0 0 0 17297 32154.84765625 0.4894326222496308 3 -0.09520721435546875 10 Unmodified _KVLVGPTE_ REV__ENSG00000115568|ENST00000411696|ZNF142 2.302733041254933 0.38822285293237185 1 H 1 -1 6.9897 0 0 0.83064 0 0 539.350437148581 162.05584131412346 701.4062784627044 0 0 0 0 0 0 0 0 0 H 0.83064 - 8 + NaN NaN 102335.7 NaN 13859 3446 17297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17309 72.96 NaN 2126700 35 0 374600 0.327 + 30868 VQPRNWLLF 9 108 586.8324733058458 1171.6503936784916 2 586.832763671875 MULTI HCD FTMS 0 0 0 17308 1398566.375 0.35996785666623815 4 -0.111480712890625 1 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 92.8221339359638 0.0044520161739443126 1 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 73.72 0 0 6.292 6.292 88.424 0 0 0 13.705505912157868 24.184475137829807 13.705505912157868 9.208187539523749 0 1.774227503252014 0.8860566476931632 0 1.3684151806525389 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]GG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]QV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{M(Oxidation (M))|F}{I|L};VQ[RP]WN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{I|L}V[PG]N{I|L}{M(Oxidation (M))|F};{[WN]|[YH]}[RP]{I|L}N{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]Q{I|L}V{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HV][PG]Y{I|L}{I|L}{M(Oxidation (M))|F} 6.292;5.5061;5.4941;5.4261;5.0313;4.9932;4.8551;4.7931;4.7244;4.7097 -;-;-;-;-;-;-;-;-;- 3007 NaN NaN 416332.9 NaN 13860 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17310 72.964 NaN 610420 35 0 76863 0.261 + 6577 FPLDLDVKM 9 87 539.2863109526344 1076.5580689720687 2 539.2862548828125 MULTI HCD FTMS 0 0 0 17308 307170.25 0.6093372319881454 -7 0.19635009765625 2 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 71.70789743142352 0.008535567138151097 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM 9 0 + 88.387 0 0 8.2102 8.2102 92.87 0 0 0 10.268024924119672 14.973024840566467 10.268024924119672 10.268024924119672 0 2.504432191740108 1.3979400086720375 0.7302046884880937 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM;[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVKM;[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}DVKM;M{I|L}{I|L}D{I|L}Q[TP]{M(Oxidation (M))|F};[{I|L}P]D{I|L}D{M(Oxidation (M))|F}VKM;[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVKM;{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}Q{I|L}TM;M{I|L}{I|L}D{I|L}[AG][TP]{M(Oxidation (M))|F} 8.2102;7.2564;6.6967;6.1913;5.8221;5.5119;5.3934;5.2697;5.2387;4.9668 +;-;-;+;-;-;-;-;-;- + 751 NaN NaN 172425.7 NaN 13861 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17311 72.968 NaN 1246700 35 0 109200 0.261 + 30049 VFRLQFDEF 9 106 600.8067915027602 1199.5990300723204 2 600.8070068359375 MULTI HCD FTMS 0 0 0 17308 581904.125 0.2681039428715507 -4 0.121185302734375 3 Unmodified _VFRLQFDEF_ ENSG00000072803|ENST00000517395|FBXW11;ENSG00000166167|ENST00000370187|BTRC;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC 165.7202790778711 6.154960448002056E-09 1 V{M(Oxidation (M))|F}R{I|L}Q{M(Oxidation (M))|F}DE{M(Oxidation (M))|F} 9 0 + 96.046 0 0 8.0065 8.0065 91.435 0 0 0 11.281899267464865 11.281899267464865 11.281899267464865 9.208187539523749 0 3.138210492164445 0 2.6861818737241734 0 + + V{M(Oxidation (M))|F}R{I|L}Q{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};V{M(Oxidation (M))|F}R{I|L}[AG]{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]R{I|L}Q{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]V{I|L}Q{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]R{I|L}[AG]{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]V{I|L}[AG]{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};V{M(Oxidation (M))|F}R{I|L}QEY{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V]RAAV{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]VAAV{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]R{I|L}QED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.0065;7.2389;7.066;6.9762;6.2984;6.2086;5.6264;5.5833;5.4934;5.1264 +;-;+;-;-;-;-;-;-;- + 4175 + NaN NaN 276893.4 NaN 13862 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17312 72.971 NaN 570400 35 0 107050 0.261 -1 VIEDVQCPDIM 11 74 639.2911799668256 1276.567807000451 2 639.3045654296875 MULTI HCD FTMS 0 0 0 17308 70934.71875 0.8277224978873104 -1 0.036102294921875 4 Oxidation (M) _VIEDVQCPDIM(Oxidation (M))_ ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant 20.41453444215458 0.279209903849948 1 D{M(Oxidation (M))|F}{I|L} 3 -1 29.737 0 0 2.3295 0 0 883.4042807432552 0 883.4042807432552 0 13.426003480513486 0 0 0 0 0 0.6549471895720984 0 D{M(Oxidation (M))|F}{I|L} 2.3295 - 147 NaN NaN 167256 NaN 13863 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17313 72.974 NaN 216030 35 0 27468 0.263 + 22281 QPDVVVVEL 9 52 499.2819142819927 996.5492756307855 2 499.2819519042969 MULTI HCD FTMS 0 0 0 17308 70075.0234375 0.5436127972237551 -1 0.036102294921875 5 Unmodified _QPDVVVVEL_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 31.26834338654808 0.10542797264966089 1 VVE{I|L} 4 5 48.175 0 0 4.8342 0 0 538.276170799025 0 538.276170799025 0 43.738350322034236 0 0 0 1.274227503252014 0 0.3494850021680094 0 + VVE{I|L} 4.8342 + + 35 NaN NaN 111579.5 NaN 13864 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17314 72.978 NaN 181690 35 0 10594 0.261 + 20358 NYSYIFKYI 9 55 605.8100973414859 1209.6056417497716 2 605.810546875 MULTI HCD FTMS 0 0 0 17308 72671.984375 0.5370023628761161 -1 0.036102294921875 6 Unmodified _NYSYIFKYI_ ENSG00000119396|ENST00000373840|RAB14 53.40400417844725 0.026808823219830042 1 [YN]SY{I|L}{M(Oxidation (M))|F}KY{I|L} 9 0 + 74.587 0 0 6.1662 6.1662 93.557 0 0 0 53.61818737241734 11.39506772603255 11.39506772603255 71.16827851303363 0 2.048455006504028 1.5228787452803376 0 0 + + [YN]SY{I|L}{M(Oxidation (M))|F}KY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K[HQ][NS][R{M(Oxidation (M))|F}] 6.1662;0.28265 +;- + 135 + NaN NaN 109233.5 NaN 13865 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17315 72.981 NaN 377360 35 0 65793 0.261 -1 MPSVPDFETL 10 71 576.2685579589004 1150.5225629846007 2 576.2799682617188 MULTI HCD FTMS 0 0 0 17308 19848.1171875 0.09525074791002479 11 -0.307708740234375 7 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 9.38312468134398 0.42334543440173333 1 K{M(Oxidation (M))|F}S{I|L}W 5 -1 34.97 0 0 3.0395 0 0 471.1659413068375 0 471.1659413068375 0 14.915944217999062 0 0 0 0 0 0.4247425010840047 0 K{M(Oxidation (M))|F}S{I|L}W 3.0395 - 203 NaN NaN 146285.4 NaN 13866 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17316 72.984 NaN 165140 35 0 9511.9 0.261 + 13380 KYNFIPEVW 9 70 598.3108638586335 1194.607174784067 2 597.8240966796875 MULTI HCD FTMS 0 0 0 17308 14513.3857421875 0.46701845730285524 -1 0.036102294921875 8 Unmodified _KYNFIPEVW_ CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2 10.073929032068715 0.27331982688540024 1 W 1 8 20.485 0 0 1.7148 0 0 990.5179699274248 0 990.5179699274248 0 4.030899869919438 0 0 0 0.3494850021680094 0 0 0 + W 1.7148 + + 204 + NaN NaN 106211.3 NaN 13867 3447 17308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17318 72.989 NaN 2897900 35 0 894750 0.327 + 23315 RISLPLPNF 9 74 528.8138732709568 1055.6131936087136 2 528.81396484375 MULTI HCD FTMS 0 0 0 17317 1301718.625 1 0 0 1 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 75.5705956163825 0.007285660612518157 1 PE{I|L}P{I|L}PN{M(Oxidation (M))|F} 8 3 86.119 0 0 8.1582 0 0 130.11121507650176 0 130.11121507650176 0 63.31050765237694 0 0 0 2.774227503252014 0 0.6307196863200843 0.9698565171985375 PE{I|L}P{I|L}PN{M(Oxidation (M))|F} 8.1582 - 493 + NaN NaN 534457.7 NaN 13868 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17319 72.994 NaN 1691800 35 0 272930 0.261 + 29903 VFDPKVFTF 9 78 550.295004149522 1098.575455365844 2 550.2948608398438 MULTI HCD FTMS 0 0 0 17317 852190.0625 0.29760744414928003 6 -0.17023468017578125 2 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 65.47368725323818 0.010552856507075443 1 [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 40.965 0 0 3.7289 3.7289 85.371 0 0 0 1.2840808820180882 1.9309134750501187 1.2840808820180882 9.771212547196622 0 2.5612431371158735 0 0 0 + + [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KP]DV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{I|L}[NP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.7289;2.8394;2.1154;0.27407 +;-;-;- + 411 NaN NaN 341219.8 NaN 13869 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17320 72.997 NaN 1056100 35 0 64288 0.261 + 25474 SFDLLPREF 9 94 562.2920278601487 1122.5695027870972 2 562.8090209960938 MULTI HCD FTMS 0 0 0 17317 56958.2421875 0.8677934827541838 -3 0.0919647216796875 3 Unmodified _SFDLLPREF_ ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L 29.84058131909904 0.11198220037953927 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}SM{I|L} 9 6 49.236 0 0 4.386 0 0 0 128.04305092247412 128.04305092247412 6.684983363500976 0 0 0 0 1.5356668758921828 1.5228787452803376 0.5796896906561032 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}SM{I|L} 4.386 - 2493 NaN NaN 248537.8 NaN 13870 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17321 73 NaN 808330 35 0 131860 0.261 -1 KYMDIEFDF 9 87 612.2684187925513 1222.5222846519025 2 612.7533569335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 31.26834338654808 0.10542797264966089 1 [YE]WYHD{M(Oxidation (M))|F}T 8 -1 44.819 0 0 3.6661 0 0 0 78.03000376890182 78.03000376890182 -0.9500758084154626 0 -0.9500758084154626 0 0 0 1.6989700043360187 0.5 0 [YE]WYHD{M(Oxidation (M))|F}T 3.6661 - 1594 NaN NaN 207008.7 NaN 13871 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17322 73.004 NaN 615780 35 0 109060 0.261 -1 0 80 622.2948358044622 1242.5751186757243 2 622.2944946289062 MULTI HCD FTMS 0 0 0 17317 325166.6875 0.17908990344704898 19 -0.5190200805664062 5 NaN NaN 1 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 -1 48.826 0 0 3.9294 0 0 491.21638686347814 0 491.21638686347814 0 17.1035532790583 0 0 0 1.3252574989159953 0 0 0 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 3.9294 - 1363 NaN NaN 176310.6 NaN 13872 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17323 73.007 NaN 481040 35 0 52234 0.261 + 29297 TYMETYVYF 9 67 616.7633033229139 1231.5120537126277 2 616.7623901367188 MULTI HCD FTMS 0 0 0 17317 287318.5 1 0 0 6 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ ENSG00000013563|ENST00000369807|DNASE1L1 64.23631603340823 0.01165516075559909 1 TYVY{M(Oxidation (M))|F} 5 4 68.003 0 0 5.5219 0 0 540.1893788068375 0 540.1893788068375 0 58.16007197610702 0 0 0 1.9247425010840047 0 1.2302046884880937 0 + TYVY{M(Oxidation (M))|F} 5.5219 + + 318 NaN NaN 159004.6 NaN 13873 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17324 73.01 NaN 243930 35 0 37377 0.263 -1 VPMEDINL 8 59 473.7313118513415 945.448070769483 2 473.73114013671875 MULTI HCD FTMS 0 0 0 17317 188405.578125 1 0 0 7 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 28.486842064014134 0.3788298654084067 1 {I|L}N{I|L} 3 -1 38.188 0 0 4.0391 0 0 587.2263891838095 0 587.2263891838095 0 24.20818753952375 0 0 0 0.8494850021680094 0 0 0.3494850021680094 {I|L}N{I|L} 4.0391 + + 20 NaN NaN 112888 NaN 13874 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17325 73.014 NaN 504580 35 0 108510 0.261 + 25146 SAIHILDVL 9 71 490.7925462500316 979.5705395668632 2 490.79248046875 MULTI HCD FTMS 0 0 0 17317 252049.984375 0.3776015586083947 -4 0.118133544921875 8 Unmodified _SAIHILDVL_ ENSG00000137200|ENST00000373451|CMTR1 68.08070601005525 0.009709267492204555 1 {I|L}{I|L}DV{I|L} 5 4 53.162 0 0 5.4271 0 0 408.21260268379064 0 408.21260268379064 0 27.219712763997563 0 0 0 1.6549471895720984 0 0.7059771852360797 0 + {I|L}{I|L}DV{I|L} 5.4271 + + 153 NaN NaN 161368.8 NaN 13875 3448 17317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17327 73.019 NaN 14290000 35 0 2998100 0.327 + 24211 RYFLPPYTF 9 85 602.3135920149654 1202.6126310967306 2 602.3138427734375 MULTI HCD FTMS 0 0 0 17326 8274826 0.7771058579424377 1 -0.01953887939453125 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 103.35351024395868 0.004027461563756449 1 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 78.58 0 0 6.5341 6.5341 91.975 0 0 0 5.6424927368725974 44.187229799947204 5.6424927368725974 20.353057777312827 0 2.4489700043360187 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]H{I|L}P{I|L}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]P[H{I|L}]{I|L}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}PP[PG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP[YR]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F} 6.5341;4.8417;4.4245;2.947;2.8322;2.8247;2.3975;2.363;2.3482;2.3316 +;-;-;-;-;-;-;-;-;- + 1482 NaN NaN 756040.2 NaN 13876 3449 17326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17328 73.023 NaN 1043900 35 0 167560 0.261 + 27233 SYNPLWLRI 9 91 581.3243067189838 1160.6340605047676 2 581.3243408203125 MULTI HCD FTMS 0 0 0 17326 271003.375 0.05041222174218562 16 -0.4439697265625 2 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 61.60191391372663 0.015340508911304802 1 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L} 9 0 + 55.406 0 0 4.7738 4.7738 85.867 0 0 0 28.41921308868605 9.889917747712644 9.889917747712644 9.208187539523749 0 1.9876954943324545 1.2218487496163564 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L} 4.7738;3.9804 +;- + 2305 + NaN NaN 262229.9 NaN 13877 3449 17326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17329 73.027 NaN 422690 35 0 95429 0.261 + 29213 TYLDNGVVF 9 51 514.2582171125084 1026.5018812918167 2 514.2586059570312 MULTI HCD FTMS 0 0 0 17326 176511.46875 0.8322558030157293 -2 0.05910491943359375 3 Unmodified _TYLDNGVVF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 78.7280429016045 0.006263961847259105 1 {I|L}DNRV{M(Oxidation (M))|F} 6 4 66.266 0 0 6.4555 0 0 264.1117115705094 0 264.1117115705094 0 59.27616592881115 0 0 0 2.1307196863200843 0 0.7614393726401688 0.8494850021680094 {I|L}DNRV{M(Oxidation (M))|F} 6.4555 - 187 NaN NaN 167897.9 NaN 13878 3449 17326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17330 73.03 NaN 488030 35 0 94654 0.261 + 33414 YGRTQMTLTF 10 56 609.3030957622709 1216.5916385913417 2 609.3033447265625 MULTI HCD FTMS 0 0 0 17326 157999.53125 0.6696444476761242 -1 0.02935791015625 4 Unmodified _YGRTQMTLTF_ ENSG00000029639|ENST00000367166|TFB1M 16.149105407346934 0.3600587335443843 1 T{M(Oxidation (M))|F} 2 8 29.464 0 0 2.4218 0 0 950.467212606643 0 950.467212606643 0 10.026975159433533 0 0 0 0.5 0 0.3494850021680094 0 + T{M(Oxidation (M))|F} 2.4218 + + 95 NaN NaN 174788.5 NaN 13879 3449 17326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17331 73.033 NaN 136940 35 0 16351 0.264 + -1 GGFGAPCQCRF 11 61 419.5151504098503 1255.523621829751 3 419.514892578125 MULTI HCD FTMS 0 0 0 17326 31094.57421875 0.2132080206945576 1 -0.01953887939453125 5 2 Carbamidomethyl (C) _GGFGAPC(Carbamidomethyl (C))QC(Carbamidomethyl (C))RF_ REV__ENSG00000162804|ENST00000310397|SNED1;REV__nc|ENSG00000162804|Q8TER0-3|SNED1;REV__nc|ENSG00000162804|Q8TER0-4|SNED1;REV__nc|ENSG00000162804|Q8TER0-5|SNED1 1.3296431237094175 0.4130893034510334 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.0166 0 0 1090.4445488090462 0 1090.4445488090462 0 8.014888009441028 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0166 + + 8 + NaN NaN 106617.3 NaN 13880 3449 17326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17333 73.038 NaN 1373900 35 0 237270 0.327 + 25928 SPASDTYIVF 10 83 550.2692002422799 1098.5238475513597 2 550.2693481445312 MULTI HCD FTMS 0 0 0 17332 798417.1875 1 0 0 1 Unmodified _SPASDTYIVF_ ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA 37.97399986684836 0.1629881689457739 1 TY{I|L}V{M(Oxidation (M))|F} 5 5 44.689 0 0 4.0681 0 0 457.1822682111344 0 457.1822682111344 0 17.266172198531855 0 0 0 1.4247425010840047 0 0.75 0 + TY{I|L}V{M(Oxidation (M))|F} 4.0681 + + 439 NaN NaN 289279.9 NaN 13881 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17334 73.043 NaN 1120900 35 0 224170 0.261 + 5775 FPANVMDVI 9 90 511.2549282412626 1020.4953035493252 2 511.2548828125 MULTI HCD FTMS 0 0 0 17332 497558.1875 0.6345327495783362 8 -0.22906494140625 2 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 56.17704186161178 0.022929533404884107 1 {[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}{M(Oxidation (M))|F}DV{I|L} 9 2 + 43.711 0 0 4.2833 4.2833 81.604 0 0 0 2.3798370503831094 24.179987112256217 2.3798370503831094 3.0102999566398125 0 1.4361818737241734 0 0.3054621874040891 0.3494850021680094 {[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}{M(Oxidation (M))|F}DV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[NV]|[RG]}{M(Oxidation (M))|F}DV{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[WD]{M(Oxidation (M))|F}DV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}D{M(Oxidation (M))|F}V{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}[C(Carbamidomethyl (C))S]DV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[NV]|[RG]}D{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{I|L}[C(Carbamidomethyl (C))S]DV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}DV{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[WD]D{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}DV{I|L} 4.2833;3.9883;3.8474;2.8872;2.8052;2.5922;2.5102;2.4654;2.4513;2.3942 -;+;-;-;-;-;-;-;-;- + 1166 NaN NaN 249664.3 NaN 13882 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17335 73.046 NaN 904700 35 0 69275 0.261 + 25475 SFDLLPREF 9 102 562.2920278601487 1122.5695027870972 2 562.3055419921875 MULTI HCD FTMS 0 0 0 17332 56611.8203125 0.4044381231934743 -1 0.01953887939453125 3 Unmodified _SFDLLPREF_ ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L 41.95555342248728 0.056367691549927025 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}SM{I|L} 9 6 63.306 0 0 5.6394 0 0 0 128.04428737233948 128.04428737233948 27.389502287551707 0 0 0 0 1.5114393726401687 2 0.6307196863200843 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}SM{I|L} 5.6394 - 1847 NaN NaN 224757.8 NaN 13883 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17336 73.049 NaN 299450 35 0 34587 0.264 + 28800 TTSMHSGS 8 63 404.16961921983085 806.3246855064617 2 404.1700439453125 MULTI HCD FTMS 0 0 0 17332 213606.671875 0.02073408923116108 39 -1.0715713500976562 4 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 1 {I|L}[EP] 3 -1 3.9524 0 0 0.49018 0 0 449.1533555720133 0 449.1533555720133 0 2.8431811792050627 0 0 0 0 0 0 0 {I|L}[EP] 0.49018 - 5 NaN NaN 126649.9 NaN 13884 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17337 73.053 NaN 576120 35 0 89769 0.261 + 21627 PYPQYFTQL 9 83 578.7878928549109 1155.5612327766216 2 578.7877807617188 MULTI HCD FTMS 0 0 0 17332 127014.25 0.16828559896906825 7 -0.206329345703125 5 Unmodified _PYPQYFTQL_ ENSG00000103160|ENST00000219439|HSDL1 47.594388314883695 0.03493607795751234 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L} 9 0 + 43.053 0 0 3.7258 3.7258 84.454 0 0 0 5.307350590275988 23.80085031357944 5.307350590275988 9.208187539523749 0 1.5451140161145327 1.154901959985743 0.2742275032520141 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}T[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}[SG]VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y[YQ]VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KV{M(Oxidation (M))|F} 3.7258;2.9289;1.7269;0.72897;0.56829 +;-;-;-;- + 343 NaN NaN 165960.1 NaN 13885 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17338 73.056 NaN 374150 35 0 83491 0.261 + 8402 GYPLWKVTF 9 70 555.8026984757278 1109.5908440182554 2 555.802490234375 MULTI HCD FTMS 0 0 0 17332 62131.53515625 0.014328594111204023 32 -0.89947509765625 6 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 51.629811660486645 0.02929079705179888 1 [YG]{I|L}Q{I|L}N 6 6 42.809 0 0 3.8581 0 0 0 418.18686853580317 418.18686853580317 12.882418650521359 0 0 0 0 0.3054621874040891 1.5228787452803376 0 0 [YG]{I|L}Q{I|L}N 3.8581 - 515 + NaN NaN 135996.5 NaN 13886 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17339 73.059 NaN 133980 35 0 6145.5 0.261 -1 0 66 606.3362051279448 605.3289286613448 1 606.3359985351562 MULTI HCD FTMS 0 0 0 17332 30519.03125 0.5941082325830779 1 -0.0328369140625 7 NaN NaN 1 K[Y{I|L}] 3 -1 8.072 0 0 1.3335 0 0 183.07701933692914 0 183.07701933692914 0 0.796896906561031 0 0 0 0 0 0 0 K[Y{I|L}] 1.3335 - 22 + NaN NaN 104341.1 NaN 13887 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17340 73.063 NaN 123350 35 0 24521 0.263 + 30790 VPSHYFVL 8 38 481.26126711281955 960.5079812924391 2 481.2613830566406 MULTI HCD FTMS 0 0 0 17332 20366.8125 0.25774127875247366 -2 0.04889678955078125 8 Unmodified _VPSHYFVL_ REV__ENSG00000182836|ENST00000377801|PLCXD3 4.75600775471527 0.5349361699807423 1 C{M(Oxidation (M))|F}V{I|L} 4 -1 27.423 0 0 2.855 0 0 480.2555103986344 0 480.2555103986344 0 24.658540481912503 0 0 0 0 0 0 0 C{M(Oxidation (M))|F}V{I|L} 2.855 - 9 NaN NaN 96333.2 NaN 13888 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17341 73.066 NaN 70352 35 0 8963.1 0.261 + 14726 LHLHDENI 8 40 495.7527770996094 NaN 0 495.7527770996094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LHLHDENI_ RPGRIP1L|p.R56H|1|0.42|ENSG00000103494|chr16:53696214-53696214|C/T|missense_variant 2.8892196856762586 0.38822285293237185 1 T 1 8 6.9897 0 0 0.70785 0 0 130.0649216610097 753.3239771638249 883.3888988248345 0 0 0 0 0 0 0 0 0 T 0.70785 - 2 + NaN NaN 94976 NaN 13889 3450 17332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17343 73.071 NaN 1722400 35 0 634460 0.327 -1 0 71 413.1934236862167 824.3722944392334 2 413.1935119628906 MULTI HCD FTMS 0 0 0 17342 990309.8125 0.7466386796169208 3 -0.0885009765625 1 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 7.7423 0 0 0.93917 0 0 238.05425352302092 423.2723577917001 661.326611314721 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 0.93917 - 15 + NaN NaN 337761.9 NaN 13890 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17344 73.075 NaN 737380 35 0 42532 0.261 + 34481 YPFIIDAHL 9 92 544.7927482550663 1087.5709435769325 2 544.79248046875 MULTI HCD FTMS 0 0 0 17342 201744.03125 0.2462092718686906 8 -0.2322235107421875 2 Unmodified _YPFIIDAHL_ ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10 81.61307344734483 0.005330412723537057 1 YP{M(Oxidation (M))|F}{I|L}{I|L}DHA{I|L} 9 2 + 86.978 0 0 7.9975 7.9975 92.564 0 0 0 54.739152941678306 7.262036441594191 7.262036441594191 10.536049848239344 0 2.2302046884880937 2 0.2614393726401688 0 YP{M(Oxidation (M))|F}{I|L}{I|L}DHA{I|L};YP{I|L}{M(Oxidation (M))|F}{I|L}DHA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YYK{I|L}{I|L}{M(Oxidation (M))|F}QN;YYK{I|L}{I|L}{M(Oxidation (M))|F}GAN;YP{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};YP{I|L}{I|L}{M(Oxidation (M))|F}DHA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}QN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}GAN 7.9975;7.0287;6.3086;6.2172;6.1701;5.9767;5.6366;5.4906;5.2559;5.2138 -;-;+;-;-;-;-;-;-;- + 1941 + NaN NaN 203016.5 NaN 13891 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17345 73.079 NaN 248850 35 0 67116 0.261 -1 CEITFIESEE 10 63 628.7696802454665 1255.5248075577329 2 628.7685546875 MULTI HCD FTMS 0 0 0 17342 26002.89453125 0.43207710211871414 3 -0.0885009765625 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))EITFIESEE_ ENSG00000106633|ENST00000403799|GCK;ENST00000459642.1_1_7:44184737-44185442:-|nuORF;GCK|p.S433C|1|0.36|ENSG00000106633|chr7:44145237-44145237|T/A|missense_variant;nc|ENSG00000106633|P35557-2|GCK;nc|ENSG00000106633|P35557-3|GCK 1.4819007175156935 0.4674597685733628 1 Q 1 -1 1.5938 0 0 0.12694 0 0 703.1957803133954 421.25730310611567 1124.4530834195111 0 0 0 0 0 0 0 0 0 Q 0.12694 - 27 + NaN NaN 118885.1 NaN 13892 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17346 73.082 NaN 180320 35 0 13007 0.261 + 2165 DIAVEIMRSIC 11 65 625.3168253284468 NaN 0 625.3016967773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _DIAVEIMRSIC_ tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 5.296884461304476 0.3270944076746277 1 {M(Oxidation (M))|F}T 2 10 10.846 0 0 0.86864 0 0 642.3333444051374 355.14878259830317 997.4821270034406 0 0 0 0 0 0 0 0.28872548999643577 0 {M(Oxidation (M))|F}T 0.86864 - 43 + NaN NaN 106492.7 NaN 13893 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17347 73.086 NaN 159260 35 0 20623 0.263 + 6953 FPVQQDYF 8 51 522.2460468192133 1042.4775407052266 2 522.2457275390625 MULTI HCD FTMS 0 0 0 17342 45819.73046875 0.5368542540725009 15 -0.39846038818359375 5 Unmodified _FPVQQDYF_ REV__ENSG00000244405|ENST00000306376|ETV5;REV__ENST00000472868.6_1_3:185783843-185823657:-|nuORF;REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF;REV__ETV5|p.H179Pfs*31|1|0.31|ENSG00000244405|chr3:186079931-186079932|-/G|frameshift_variant;REV__nc|ENSG00000244405|P41161-2|ETV5 12.531546534597751 0.5015908124873912 1 PE 2 -1 20.969 0 0 2.0115 0 0 798.3535955935238 0 798.3535955935238 0 3.0102999566398125 0 0 0 0 0 0 0 PE 2.0115 - 32 NaN NaN 109725 NaN 13894 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17348 73.089 NaN 213350 35 0 40064 0.261 + 35048 YTKMPPTVL 9 50 525.288377028906 NaN 0 525.2877807617188 PEAK HCD FTMS 0 0 0 17342 68538.609375 1 0 0 6 Unmodified _YTKMPPTVL_ REV__ENSG00000183888|ENST00000329454|SRARP 10.073929032068715 0.24642998803896465 1 A 1 -1 10.044 0 0 0.95791 0 0 812.4460645052744 162.0560701959594 974.5021347012338 0 0 0 0 0 0.3054621874040891 0 0 0 A 0.95791 - 38 + NaN NaN 114186.9 NaN 13895 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17349 73.092 NaN 215840 35 0 16723 0.261 + 21677 PYYSKFILI 9 79 572.3261287977801 1142.6377046623602 2 572.3256225585938 MULTI HCD FTMS 0 0 0 17342 59476.30078125 0.017035154744061528 44 -1.2086334228515625 7 Unmodified _PYYSKFILI_ ENSG00000164815|ENST00000297431|ORC5 20.41453444215458 0.18397929046831515 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y 3 6 37.447 0 0 3.2773 0 0 0 716.4350428794102 716.4350428794102 11.983842625304959 0 0 0 0 1 1.6989700043360187 0 0 + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y 3.2773 + + 473 NaN NaN 137752.6 NaN 13896 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17350 73.096 NaN 200160 35 0 9934.7 0.261 -1 DAFAEWTEM 9 69 558.2215331310609 NaN 0 558.220947265625 PEAK HCD FTMS 0 0 0 17342 20063.498046875 0.46753718378749815 2 -0.0622711181640625 8 Oxidation (M) _DAFAEWTEM(Oxidation (M))_ ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS;nc|ENSG00000116729|Q5T9L3-3|WLS 18.1463463914782 0.1998403495282098 1 WE 2 -1 14.068 0 0 1.2624 0 0 395.1353263879683 401.14655481510005 796.2818812030683 0 0 0 0 0 0.8494850021680094 0 0 0 WE 1.2624 - 94 + NaN NaN 116411.6 NaN 13897 3451 17342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17352 73.1 NaN 976400 35 0 160820 0.327 + 30869 VQPRNWLLF 9 82 586.8324733058458 1171.6503936784916 2 586.8328857421875 MULTI HCD FTMS 0 0 0 17351 446979.125 0.11504503502795892 9 -0.26140594482421875 1 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 64.23631603340823 0.01165516075559909 1 {[QV]|[N{I|L}]|[RA]|[KV]}[RP]WN{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 59.601 0 0 5.0869 5.0869 81.587 0 0 0 11.667724800373449 42.94531259372398 11.667724800373449 0.2422750325201406 0 1.3252574989159953 0 0 1.0484550065040281 {[QV]|[N{I|L}]|[RA]|[KV]}[RP]WN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WQV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}QV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]NW{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WGG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WQ{I|L}V{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W[AG]V{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}VQ{M(Oxidation (M))|F} 5.0869;5.0662;4.7679;4.3232;4.3161;4.301;4.2803;4.0249;3.982;3.8089 -;-;-;-;+;-;-;-;-;- + 579 NaN NaN 242242.1 NaN 13898 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17353 73.105 NaN 2312500 35 0 266300 0.261 + 19757 NYAWVYYHL 9 107 614.7929287250602 1227.5713045169202 2 615.3137817382812 MULTI HCD FTMS 0 0 0 17351 206173.3125 0.0051612680083227835 140 -3.1844100952148438 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 1 [YN]AWVYYH{I|L} 9 0 + 82.521 0 0 6.7223 6.7223 85.889 0 0 0 11.009402867429102 32.97163135807219 11.009402867429102 3.1991494456215577 0 2.4876954943324545 1.5228787452803376 0 1.4313681739009887 + + [YN]AWVYYH{I|L};[YN]AWVYHY{I|L};[YN]AWVYH{I|L}Y;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}GA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{I|L}ES{M(Oxidation (M))|F}GA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Q{I|L}]{M(Oxidation (M))|F}AES{M(Oxidation (M))|F}GA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}GR{[CA]|SS};[YN]AWV[{M(Oxidation (M))|F}V]R{[CA]|SS};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AE{M(Oxidation (M))|F}SGA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AEAYGA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.7223;6.4617;6.0185;5.287;5.0418;4.8049;4.6298;4.6045;4.4824;4.4824 +;-;-;-;-;-;-;-;-;- + 13033 NaN NaN 436150.2 NaN 13899 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17354 73.108 NaN 1918100 35 0 175260 0.261 + 4757 EYTRALFLL 9 105 563.3191115721968 1124.6236702111935 2 563.3195190429688 MULTI HCD FTMS 0 0 0 17351 846582.0625 0.48168336854928145 -3 0.08180999755859375 3 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 88.95385435242217 0.004553379958619559 1 {I|L}[C(Carbamidomethyl (C))S]{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 7 5 54.786 0 0 4.8715 0 0 260.15257032980236 0 260.15257032980236 0 14.498351373633952 0 0 0 1.610924374808178 0 1.9247425010840047 0 {I|L}[C(Carbamidomethyl (C))S]{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 4.8715 - 2472 NaN NaN 364872.8 NaN 13900 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17355 73.112 NaN 308840 35 0 45398 0.261 + 15408 LPDIKVLTL 9 70 506.32620045275064 1010.6378479723013 2 506.32598876953125 MULTI HCD FTMS 0 0 0 17351 112353.84375 0.22763373420074148 4 -0.11467742919921875 4 Unmodified _LPDIKVLTL_ ENSG00000115241|ENST00000344034|PPM1G;ENST00000472077.1_1_2:27604468-27607956:-|nuORF 49.52724829834842 0.03223213920720493 1 {I|L}PD{I|L} 4 5 45.979 0 0 4.5495 0 0 0 569.3686007135374 569.3686007135374 25.762495684687735 0 0 0 0 1.0501648626366045 0 0.805462187404089 0 + {I|L}PD{I|L} 4.5495 + + 39 + NaN NaN 136690.9 NaN 13901 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17356 73.115 NaN 859950 35 0 99587 0.261 + 6148 FPEHIFPAL 9 85 535.7874980933541 1069.560443253508 2 535.7872924804688 MULTI HCD FTMS 0 0 0 17351 311087.625 0.02151534241186416 41 -1.1168594360351562 5 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}PA{I|L} 4 5 40.42 0 0 3.7791 0 0 623.306785792412 0 623.306785792412 0 20.28151250383644 0 0 0 1.3252574989159953 0 0 0 + {M(Oxidation (M))|F}PA{I|L} 3.7791 + + 365 NaN NaN 207120.1 NaN 13902 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17357 73.118 NaN 486070 35 0 74436 0.261 -1 TFMLRYLLL 9 61 593.338948205577 1184.663343477954 2 593.8404541015625 MULTI HCD FTMS 0 0 0 17351 81677.5546875 0.286262977593854 12 -0.33283233642578125 6 Oxidation (M) _TFM(Oxidation (M))LRYLLL_ ENST00000212355.8_1_1:92177969-92181824:-|nuORF 13.90604991867851 0.24021115267848145 1 {I|L}P[YT]{I|L}{I|L} 6 -1 29.385 0 0 2.4805 0 0 466.23193696789923 0 466.23193696789923 0 6.072099696478688 0 0 0 0.3494850021680094 0 0.5 0 {I|L}P[YT]{I|L}{I|L} 2.4805 - 361 NaN NaN 173836.9 NaN 13903 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17358 73.122 NaN 284600 35 0 27235 0.261 + 23442 RLPLRLFLI 9 82 570.8847232682322 1139.7548936032642 2 570.8847045898438 MULTI HCD FTMS 0 0 0 17351 88110.0390625 0.16012288451407855 14 -0.36902618408203125 7 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 11.640296217721598 0.25978676193971967 1 {I|L}R 2 7 22.519 0 0 1.9757 0 0 0 867.5463871422488 867.5463871422488 6.58870936703728 0 0 0 0 0 0 0 0.3054621874040891 + {I|L}R 1.9757 + + 134 + NaN NaN 125907.4 NaN 13904 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17359 73.125 NaN 162490 35 0 18049 0.261 + 6954 FPVQQDYF 8 60 522.2460468192133 1042.4775407052266 2 522.7481079101562 MULTI HCD FTMS 0 0 0 17351 24271.12890625 0.3492603677352105 10 -0.28748321533203125 8 Unmodified _FPVQQDYF_ REV__ENSG00000244405|ENST00000306376|ETV5;REV__ENST00000472868.6_1_3:185783843-185823657:-|nuORF;REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF;REV__ETV5|p.H179Pfs*31|1|0.31|ENSG00000244405|chr3:186079931-186079932|-/G|frameshift_variant;REV__nc|ENSG00000244405|P41161-2|ETV5 7.910154910731844 0.5302565402355366 1 APE 3 -1 26.198 0 0 2.513 0 0 727.3219471662125 0 727.3219471662125 0 12.218487496163561 0 0 0 0 0 0 0 APE 2.513 - 17 NaN NaN 99548.9 NaN 13905 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17360 73.128 NaN 75861 35 0 8544.1 0.261 + 2639 DVDVCAQR 8 42 453.2098451725397 NaN 0 453.2101745605469 PEAK HCD FTMS 0 0 0 17351 28682.6328125 1 0 0 9 Unmodified _DVDVCAQR_ REV__ENSG00000142449|ENST00000600128|FBN3 2.302733041254933 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.77285 0 0 97.99926690582318 656.3173311822874 754.3165980881106 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.77285 - 1 + NaN NaN 97946.2 NaN 13906 3452 17351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17362 73.133 NaN 1585000 35 0 477070 0.327 + 23316 RISLPLPNF 9 72 528.8138732709568 1055.6131936087136 2 528.8138427734375 MULTI HCD FTMS 0 0 0 17361 731527.5625 0.5619705737098138 5 -0.1339569091796875 1 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 67.08073823543168 0.010032840856489532 1 [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F} 9 0 + 84.179 0 0 7.9744 7.9744 91.377 0 0 0 5.6424927368725974 67.8237410015243 5.6424927368725974 9.208187539523749 0 3.004432191740108 0 0.7302046884880937 0 + + [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}PGG{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}{M(Oxidation (M))|F}[NP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[RV]{I|L}Q[{I|L}P];[R{I|L}][YG]P{I|L}Q[{I|L}P];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[RV]{I|L}[AG][{I|L}P];[R{I|L}][YG]P{I|L}[AG][{I|L}P] 7.9744;7.1021;4.5137;2.1593;1.986;1.287;1.1137 +;-;-;-;-;-;- + 317 NaN NaN 319019.2 NaN 13907 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17363 73.138 NaN 645390 35 0 83758 0.261 + 6578 FPLDLDVKM 9 77 539.2863109526344 1076.5580689720687 2 539.2864990234375 MULTI HCD FTMS 0 0 0 17361 354603.5 0.703431127016071 -1 0.0328369140625 2 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM 9 0 + 91.086 0 0 8.4609 8.4609 94.739 0 0 0 13.844020238697041 75.44653786155797 13.844020238697041 16.49797211252192 0 2.6747425010840047 1.6989700043360187 0.7302046884880937 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}DVKM;[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}Q{I|L}TM;[{I|L}P]D{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}VKM;M{I|L}{I|L}D{I|L}P[TA]{[CT]|[{M(Oxidation (M))|F}G]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}E{I|L}[KC];{[WS]|[C(Carbamidomethyl (C)){I|L}]}RRDVKM;M{I|L}{I|L}DP{I|L}[TA]{[CT]|[{M(Oxidation (M))|F}G]};{M(Oxidation (M))|F}P{I|L}D{I|L}[AG]{I|L}TM 8.4609;6.9284;6.6255;5.1642;4.9561;4.8923;4.6937;4.6304;4.4319;4.3089 +;+;-;-;-;-;-;-;-;- + 431 NaN NaN 173013.8 NaN 13908 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17364 73.141 NaN 1100700 35 0 125510 0.261 + 19966 NYGLRTFLF 9 100 565.803738289841 1129.592923646482 2 565.8035888671875 MULTI HCD FTMS 0 0 0 17361 556020.125 0.7537017182608048 -3 0.0951080322265625 3 Unmodified _NYGLRTFLF_ ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF 103.41943736471063 0.004016698775839292 1 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 111.38 0 0 9.8602 9.8602 97.426 0 0 0 10.472287753157516 10.472287753157516 10.472287753157516 27.26403468139864 0 3.2059771852360797 2 0 1.3737125054200234 + + [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]G{I|L}R{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YN]G{I|L}RVVY{M(Oxidation (M))|F};[Y{I|L}][NG]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[MT][KS]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][QA]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[QP]TR{I|L}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{I|L}P]{[QS]|[NT]}TR{I|L}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]H{I|L}[NP]N{I|L}{M(Oxidation (M))|F};[Y{I|L}]H{I|L}[VG]{I|L}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.8602;7.4466;7.3765;5.6138;5.0137;4.9279;4.0637;3.883;3.7539;3.3973 +;-;-;-;-;-;-;-;-;- + 1770 NaN NaN 254272.6 NaN 13909 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17365 73.145 NaN 250600 35 0 59530 0.261 -1 VIEDVQCPDIM 11 50 639.2911799668256 1276.567807000451 2 639.3043823242188 MULTI HCD FTMS 0 0 0 17361 15382.3310546875 0.1794932257191121 5 -0.1339569091796875 4 Oxidation (M) _VIEDVQCPDIM(Oxidation (M))_ ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant 19.361941925380144 0.2883811769592959 1 D{NN|[MP]|[D{I|L}]|[EV]}[YV]D{I|L}{M(Oxidation (M))|F} 8 -1 35.468 0 0 2.7784 0 0 278.16279799629064 0 278.16279799629064 0 4.0410687620890045 0 0 0 0 0 1.1989700043360187 0.7614393726401688 D{NN|[MP]|[D{I|L}]|[EV]}[YV]D{I|L}{M(Oxidation (M))|F} 2.7784 - 47 NaN NaN 121102.3 NaN 13910 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17366 73.148 NaN 303500 35 0 22625 0.262 + 35489 YYFKIAVAL 9 81 544.3132401787839 1086.6119274243677 2 544.313232421875 MULTI HCD FTMS 0 0 0 17361 62118.046875 0.38477489407343557 1 -0.0262298583984375 5 Unmodified _YYFKIAVAL_ ENSG00000074370|ENST00000397041|ATP2A3;ENSG00000174437|ENST00000539276|ATP2A2;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1 28.486842064014134 0.11819662193267319 1 YY[K{I|L}]{I|L}{M(Oxidation (M))|F}GA{I|L} 9 3 + 52.448 0 0 4.8267 4.8267 83.192 0 0 0 21.143937264016873 32.15524128432501 21.143937264016873 4.594217171654108 0 0.7887254899964358 1.6989700043360187 0 0 YY[K{I|L}]{I|L}{M(Oxidation (M))|F}GA{I|L};YY[K{I|L}]{I|L}{M(Oxidation (M))|F}Q{I|L};YY[K{I|L}]{I|L}Y[KP];YY[K{I|L}]Y[KP]{I|L};YY[K{I|L}]Y{I|L}[KP] 4.8267;4.4039;2.7512;2.4013;2.1971 -;-;-;-;- 463 NaN NaN 129501.1 NaN 13911 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17367 73.151 NaN 158590 35 0 18171 0.261 + 22282 QPDVVVVEL 9 44 499.2819142819927 996.5492756307855 2 499.2819519042969 MULTI HCD FTMS 0 0 0 17361 53134.31640625 0.41219385957017535 5 -0.1339569091796875 6 Unmodified _QPDVVVVEL_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 19.361941925380144 0.1930734562688509 1 VVE{I|L} 4 5 37.757 0 0 3.7888 0 0 538.275682517775 0 538.275682517775 0 37.37842840780033 0 0 0 1.305462187404089 0 0 0 + VVE{I|L} 3.7888 + + 23 NaN NaN 104166.6 NaN 13912 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17368 73.155 NaN 485960 35 0 87684 0.261 + 15785 LPHELVLVL 9 62 516.8264732974485 1031.638393661697 2 516.8262329101562 MULTI HCD FTMS 0 0 0 17361 114178.8359375 0.31028609801759355 -1 0.0328369140625 7 Unmodified _LPHELVLVL_ ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7 28.486842064014134 0.11819662193267319 1 [{I|L}V]V{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}V 8 5 45.596 0 0 4.4197 0 0 0 128.07201464521066 128.07201464521066 32.83141526060586 0 0 0 0 1.274227503252014 1.5228787452803376 0 0 [{I|L}V]V{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}V 4.4197 - 88 NaN NaN 153781 NaN 13913 3453 17361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17370 73.159 NaN 12763000 35 0 2627500 0.327 + 24212 RYFLPPYTF 9 94 602.3135920149654 1202.6126310967306 2 602.3141479492188 MULTI HCD FTMS 0 0 0 17369 7354918 0.6907154135309043 6 -0.16641998291015625 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 85.64151623876279 0.004640175941193596 1 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 81.916 0 0 6.8115 6.8115 92.758 0 0 0 7.147642715192504 49.92992819099939 7.147642715192504 22.501225267834002 0 2.305462187404089 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]H{I|L}P{I|L}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}[YV]T{[QN]|[E{I|L}]|[KN]};[YT]P{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F};[YT]PP{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PP{I|L}[YR]{M(Oxidation (M))|F} 6.8115;4.9405;4.7374;2.5396;2.539;2.501;2.494;2.4102;2.3652;2.0486 +;-;-;-;-;-;-;-;-;- + 1294 NaN NaN 961481.6 NaN 13914 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17371 73.164 NaN 1552700 35 0 149580 0.261 + 22896 QYPVIIHLI 9 99 548.3321573240939 1094.6497617149878 2 548.3319702148438 MULTI HCD FTMS 0 0 0 17369 717675.3125 1 0 0 2 Unmodified _QYPVIIHLI_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 129.2004930540761 0.0006534604433583781 1 [YQ]PV{I|L}{I|L}H{I|L}{I|L} 9 0 + 64.914 0 0 5.9301 5.9301 92.794 0 0 0 2.9761469314082944 2.9761469314082944 2.9761469314082944 53.96668547897404 0 2.531718309096375 1.3979400086720375 0 1.8539171939081172 + + [YQ]PV{I|L}{I|L}H{I|L}{I|L};[H{I|L}]{I|L}[VP][YQ]{I|L}{I|L};[H{I|L}]{I|L}[VP]{I|L}[YQ]{I|L};[H{I|L}]{I|L}{I|L}[VP][YQ]{I|L} 5.9301;1.0001;0.85293;0.7644 +;-;-;- + 672 NaN NaN 327262.3 NaN 13915 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17372 73.167 NaN 717840 35 0 147720 0.261 + 25147 SAIHILDVL 9 69 490.7925462500316 979.5705395668632 2 490.7925720214844 MULTI HCD FTMS 0 0 0 17369 552487.375 0.827693341972502 2 -0.05561065673828125 3 Unmodified _SAIHILDVL_ ENSG00000137200|ENST00000373451|CMTR1 68.08070601005525 0.009709267492204555 1 {I|L}{I|L}DV{I|L} 5 4 54.557 0 0 5.5695 0 0 408.21275527168126 0 408.21275527168126 0 29.49576156063719 0 0 0 1.5629529932484498 0 0.6989700043360187 0 + {I|L}{I|L}DV{I|L} 5.5695 + + 121 NaN NaN 189893.7 NaN 13916 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17373 73.171 NaN 2856500 35 0 245920 0.261 + 29525 TYVYFTNEL 9 117 575.277957933509 NaN 0 575.27685546875 PEAK HCD FTMS 0 0 0 17369 711596.25 0.07181765425713096 -6 0.17023468017578125 4 Unmodified _TYVYFTNEL_ ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10 232.37328098223372 5.011033724550171E-59 1 NT{M(Oxidation (M))|F}YV 5 8 75.433 0 0 6.5677 0 0 260.1373768537125 261.08925241399214 521.2266292677047 0 0 0 0 0 2.6989700043360187 0 1.2447026752325154 1.7658715643802765 NT{M(Oxidation (M))|F}YV 6.5677 - 3211 NaN NaN 529916.4 NaN 13917 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17374 73.174 NaN 769100 35 0 115440 0.261 + 27234 SYNPLWLRI 9 86 581.3243067189838 1160.6340605047676 2 581.324462890625 MULTI HCD FTMS 0 0 0 17369 204228.734375 0.03799076023845986 21 -0.5716018676757812 5 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 47.594388314883695 0.03493607795751234 1 {[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]W{I|L}R{I|L} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 29.569 7.9711 3.1872 2.5477 2.5477 59.051 0 0 0 0 10.985994592184554 0 0 0 1.9604093769761874 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]W{I|L}R{I|L} 2.5477 + + 883 + NaN NaN 201718.2 NaN 13918 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17375 73.177 NaN 464990 35 0 68612 0.261 -1 FYCIFSFLM 9 80 622.2810624551712 NaN 0 622.2951049804688 PEAK HCD FTMS 0 0 0 17369 10326.021484375 0.38429499340721324 -1 0.0262298583984375 6 Carbamidomethyl (C),Oxidation (M) _FYC(Carbamidomethyl (C))IFSFLM(Oxidation (M))_ L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|8|1|anti-sense 12.531546534597751 0.23452071659215576 1 C{I|L}Y{M(Oxidation (M))|F}{[DA]|[EG]}W 7 -1 23.064 0 0 1.8562 0 0 62.02801792022917 279.11387048892817 341.14188840915733 0 0 0 0 0 0 0 0.8494850021680094 0 C{I|L}Y{M(Oxidation (M))|F}{[DA]|[EG]}W 1.8562 - 659 + NaN NaN 152263.8 NaN 13919 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17376 73.181 NaN 202130 35 0 26090 0.264 -1 VPMEDINL 8 47 473.7313118513415 945.448070769483 2 473.7309875488281 MULTI HCD FTMS 0 0 0 17369 128939.21875 0.684370494935419 6 -0.16641998291015625 7 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 28.486842064014134 0.3788298654084067 1 {I|L}N{I|L} 3 -1 37.747 0 0 3.9925 0 0 587.225960810285 0 587.225960810285 0 22.26280941356464 0 0 0 0.7742275032520141 0 0 0.3807196863200844 {I|L}N{I|L} 3.9925 + + 28 NaN NaN 116962.8 NaN 13920 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17377 73.184 NaN 342950 35 0 34733 0.261 + 21628 PYPQYFTQL 9 71 578.7878928549109 1155.5612327766216 2 578.8055419921875 MULTI HCD FTMS 0 0 0 17369 41812.2578125 0.055398515129016355 11 -0.30309295654296875 8 Unmodified _PYPQYFTQL_ ENSG00000103160|ENST00000219439|HSDL1 16.149105407346934 0.22083165093524068 1 Y{M(Oxidation (M))|F}[WR] 4 7 22.664 0 0 1.9613 0 0 485.2282887189469 0 485.2282887189469 0 2.658715643802765 0 0 0 1.1861818737241734 0 0 0 Y{M(Oxidation (M))|F}[WR] 1.9613 - 95 NaN NaN 129757.5 NaN 13921 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17378 73.187 NaN 346870 35 0 59353 0.261 + 1498 AYTTVLQEW 9 73 555.778009939282 1109.541466945364 2 555.7777709960938 MULTI HCD FTMS 0 0 0 17369 130141.7578125 1 0 0 9 Unmodified _AYTTVLQEW_ ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;nc|ENSG00000197256|Q63ZY3-3|KANK2 41.95555342248728 0.056367691549927025 1 N{I|L}QEW 5 5 40.952 0 0 3.6909 0 0 421.2084217755875 0 421.2084217755875 0 19.498147274412183 0 0 0 1.5 0 0 0 N{I|L}QEW 3.6909 - 633 NaN NaN 136516 NaN 13922 3454 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17380 73.192 NaN 2942100 35 0 297310 0.327 + 4758 EYTRALFLL 9 99 563.3191115721968 1124.6236702111935 2 563.31884765625 MULTI HCD FTMS 0 0 0 17379 1757548.875 1 0 0 1 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 107.1870275148908 0.00340162908551068 1 [YE]TRA{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 81.966 0 0 7.2883 7.2883 92.142 0 0 0 17.914478256039672 14.973024840566467 14.973024840566467 13.010299956639813 0 2.4604093769761874 1.3979400086720375 2.6549471895720984 0 + + [YE]TRA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE]TR{I|L}A{M(Oxidation (M))|F}{I|L}{I|L};[YE]TRA{I|L}{I|L}{M(Oxidation (M))|F}{I|L};[YT]ERA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE]TR{I|L}{M(Oxidation (M))|F}A{I|L}{I|L};[YT]REA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE]TR{I|L}A{I|L}{M(Oxidation (M))|F}{I|L};[YT]ER{I|L}A{M(Oxidation (M))|F}{I|L}{I|L};[YE][RV][VS]{M(Oxidation (M))|F}{I|L}{I|L};[YT]ERA{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 7.2883;6.1314;5.9748;5.6953;5.0896;4.8884;4.818;4.5385;4.4993;4.3819 +;-;-;-;-;-;-;-;-;- + 2409 NaN NaN 538960.6 NaN 13923 3455 17379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17381 73.197 NaN 6605000 35 0 612470 0.261 + 22090 QHYVFEAKE 9 131 575.779339350713 1149.544125768226 2 575.792724609375 MULTI HCD FTMS 0 0 0 17379 921092.3125 0.6737817983215115 -1 0.032806396484375 2 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 32.30548876998284 0.10066689432505688 1 [YT]VY{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F} 9 7 + 64.541 0 0 5.6145 5.6145 85.297 0 0 0 13.46787486224656 5.049406363485858 5.049406363485858 6.3797192078694565 0 0 1.2218487496163564 1.7530834337684316 0 [YT]VY{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};[YT]VY{M(Oxidation (M))|F}TNRS;[YT]YV{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};[YT]VYT{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[YT]VY{M(Oxidation (M))|F}TGGRS;[YT]VYE{I|L}C{I|L}{M(Oxidation (M))|F};[YT]VYE{I|L}{I|L}C{M(Oxidation (M))|F};[YT]YV{M(Oxidation (M))|F}TNRS;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TNRS 5.6145;5.0595;4.5569;4.4429;4.3774;4.2585;4.0615;4.0117;4.002;3.8879 -;-;-;-;-;-;-;-;-;- 19391 NaN NaN 1087954 NaN 13924 3455 17379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17382 73.2 NaN 756860 35 0 143070 0.261 + 34883 YSFEFSKN 8 98 511.236819490874 NaN 0 511.25469970703125 PEAK HCD FTMS 0 0 0 17379 9179.958984375 0.3196234566213753 2 -0.05218505859375 3 Unmodified _YSFEFSKN_ REV__tr|U7SHE2|U7SHE2_FUSNUDUF1934domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02277PE=4SV=1 18.13498045792455 0.38579626240450227 1 VD{M(Oxidation (M))|F} 3 -1 14.297 0 0 1.401 0 0 131.05846215892853 525.2483266785057 656.3067888374342 0 0 0 0 0 0 0 0.3494850021680094 0 VD{M(Oxidation (M))|F} 1.401 - 224 + NaN NaN 198264.1 NaN 13925 3455 17379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17383 73.204 NaN 229290 35 0 24162 0.262 -1 PDGSSKGC 8 48 404.16961921983085 806.3246855064617 2 404.1700744628906 MULTI HCD FTMS 0 0 0 17379 117625.453125 0.011417511539043565 44 -1.191192626953125 4 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 N 1 -1 3.9794 0 0 0.49352 0 0 201.04414728899593 488.21299158267817 689.2571388716741 0 0 0 0 0 0.3494850021680094 0 0 0 N 0.49352 - 3 + NaN NaN 117533.8 NaN 13926 3455 17379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17384 73.207 NaN 798120 35 0 82610 0.261 + 29904 VFDPKVFTF 9 85 550.295004149522 1098.575455365844 2 550.2946166992188 MULTI HCD FTMS 0 0 0 17379 129631.0703125 0.04527061886272435 13 -0.332183837890625 5 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 53.40400417844725 0.026808823219830042 1 V{M(Oxidation (M))|F}D 3 6 30.674 0 0 2.7922 0 0 0 734.3886140909608 734.3886140909608 3.9306942157398517 0 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}D 2.7922 + + 269 + NaN NaN 218933.4 NaN 13927 3455 17379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17385 73.21 NaN 344360 35 0 48039 0.261 + 33415 YGRTQMTLTF 10 56 609.3030957622709 1216.5916385913417 2 609.8046875 MULTI HCD FTMS 0 0 0 17379 103629.5546875 0.67601654373804 7 -0.19561004638671875 6 Unmodified _YGRTQMTLTF_ ENSG00000029639|ENST00000367166|TFB1M 7.608950283845883 0.4350283211712914 1 P{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F} 6 7 31.375 0 0 2.5789 0 0 540.2208729474625 0 540.2208729474625 0 23.927900303521312 0 0 0 0.9247425010840047 0 0.4247425010840047 0 P{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F} 2.5789 - 18 NaN NaN 126071.2 NaN 13928 3455 17379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17387 73.215 NaN 1442400 35 0 517800 0.327 -1 0 74 413.1934236862167 824.3722944392334 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17386 727060.0625 0.5481629669979625 8 -0.2181549072265625 1 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 8.2268 0 0 0.99795 0 0 238.05504698005217 423.27258931535437 661.3276362954066 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 0.99795 - 21 + NaN NaN 296365.8 NaN 13929 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17388 73.219 NaN 1188000 35 0 120440 0.261 + 26978 SYLPAFKVF 9 87 536.2981140112521 1070.581675089304 2 536.2984008789062 MULTI HCD FTMS 0 0 0 17386 263893.84375 1 0 0 2 Unmodified _SYLPAFKVF_ ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1 53.832793166522166 0.026208976789938845 1 AP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F} 8 7 39.066 0 0 3.649 0 0 132.11661877837952 0 132.11661877837952 0 17.366166095917563 0 0 0 0.9247425010840047 0 0.5484550065040282 0 AP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F} 3.649 - 643 + NaN NaN 258502.6 NaN 13930 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17389 73.223 NaN 825610 35 0 65602 0.261 + 3381 EESFFILKY 9 99 588.3019272703833 1174.5893016075665 2 588.302734375 MULTI HCD FTMS 0 0 0 17386 341236.5 0.968141562791252 -3 0.08184051513671875 3 Unmodified _EESFFILKY_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 96.11092074494114 0.00436583732602279 1 EES{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}KY 9 0 + 70.02 0 0 5.9612 5.9612 91.499 0 0 0 36.34286745032816 16.478174818886373 16.478174818886373 25.613087766244064 0 1.8371804965004639 0 0 0.3054621874040891 + + EES{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}KY;{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}KY;[QA]K{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}KY;[{M(Oxidation (M))|F}E]{I|L}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}KY;[MT]{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}KY;[K{I|L}]{I|L}{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEY;[K{I|L}]{I|L}{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}V{[{M(Oxidation (M))|F}D]|MM};[K{I|L}]{I|L}{M(Oxidation (M))|F}{[QS]|[NT]}C[HT]V 5.9612;3.7806;3.778;3.6488;2.2059;1.3255;0.30574;0.03601 +;-;-;-;-;-;-;- + 854 + NaN NaN 203264.1 NaN 13931 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17390 73.226 NaN 680030 35 0 67314 0.261 + 7349 FVDELTQTF 9 71 550.2692002422799 1098.5238475513597 2 550.2685546875 MULTI HCD FTMS 0 0 0 17386 168121.09375 0.2105679792245204 6 -0.1728057861328125 4 Unmodified _FVDELTQTF_ REV__ENSG00000159197|ENST00000290310|KCNE2 28.486842064014134 0.11819662193267319 1 D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L} 7 -1 34.588 0 0 3.1486 0 0 246.13687331367345 0 246.13687331367345 0 5.876437115225869 0 0 0 0 0 0 1.0387254899964358 D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L} 3.1486 - 232 NaN NaN 183752.4 NaN 13932 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17391 73.23 NaN 398030 35 0 81524 0.261 -1 TIQGCYPVI 9 56 525.7681222265545 1049.521691519909 2 525.7682495117188 MULTI HCD FTMS 0 0 0 17386 93290.0703125 0.438155437273742 -5 0.14411163330078125 5 Carbamidomethyl (C) _TIQGC(Carbamidomethyl (C))YPVI_ ENSG00000214021|ENST00000685419|TTLL3;nc|ENSG00000214021|Q9Y4R7|TTLL3;nc|ENSG00000241553|P59998-2|ARPC4;TTLL3|p.E371Rfs*44|1|0.15|ENSG00000214021|chr3:9820693-9820693|C/-|frameshift_variant 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F}NV{I|L} 4 -1 34.68 0 0 3.3044 0 0 558.2363148419937 0 558.2363148419937 0 10.728050365394424 0 0 0 0.4247425010840047 0 0 0.3494850021680094 {M(Oxidation (M))|F}NV{I|L} 3.3044 - 34 NaN NaN 161508.8 NaN 13933 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17392 73.233 NaN 277110 35 0 33159 0.261 + -1 CILMMIVI 8 59 496.77040173474654 991.5262505362931 2 496.77069091796875 MULTI HCD FTMS 0 0 0 17386 86291.359375 0.26529114766339124 -9 0.25559234619140625 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILMMIVI_ REV__ENSG00000196876|ENST00000627620|SCN8A;REV__nc|ENSG00000196876|Q9UQD0-3|SCN8A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000196876|Q9UQD0|SCN8A 17.086550045450526 0.4680768486079041 1 CP[WY]V{I|L} 6 -1 38.148 0 0 3.8474 0 0 212.1534138410172 0 212.1534138410172 0 28.85151878060192 0 0 0 1.4247425010840047 0 0 0 CP[WY]V{I|L} 3.8474 - 170 NaN NaN 120367.8 NaN 13934 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17393 73.236 NaN 300740 35 0 39149 0.261 + -1 TLLHSCELI 9 56 543.2850713220885 1084.5555897109768 2 543.2847290039062 MULTI HCD FTMS 0 0 0 17386 103411.75 0.42562184397898345 -3 0.08184051513671875 7 Carbamidomethyl (C) _TLLHSC(Carbamidomethyl (C))ELI_ REV__ENSG00000144481|ENST00000324695|TRPM8;REV__ENST00000444298.5_1_2:234856214-234923253:+|nuORF;REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8 26.88365393820708 0.12808753336095696 1 WG{I|L}{I|L} 4 -1 40.433 0 0 3.7281 0 0 597.2907059348195 0 597.2907059348195 0 27.361081649832784 0 0 0 0.8494850021680094 0 0 0 WG{I|L}{I|L} 3.7281 - 48 NaN NaN 132008.7 NaN 13935 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17394 73.24 NaN 240960 35 0 14228 0.261 + 5514 FLDDTRFIL 9 72 570.3086613449213 1138.6027697566426 2 570.3087158203125 MULTI HCD FTMS 0 0 0 17386 92063.5859375 1 0 0 8 Unmodified _FLDDTRFIL_ ENST00000556777.1_1_14:22932002-22932101:-|nuORF 25.399314129420986 0.14091189997036632 1 A{M(Oxidation (M))|F}E{I|L} 4 7 30.037 0 0 2.6381 0 0 660.3589955060562 0 660.3589955060562 0 8.610469015915783 0 0 0 0.3807196863200844 0 0.3807196863200844 0 A{M(Oxidation (M))|F}E{I|L} 2.6381 - 113 NaN NaN 117523.3 NaN 13936 3456 17386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17396 73.244 NaN 5208900 35 0 581970 0.327 -1 QFAKEEAFLM 10 118 615.2952835052727 1228.5760140773452 2 615.3138427734375 MULTI HCD FTMS 0 0 0 17395 141977.390625 0.5558885762673271 -2 0.05218505859375 1 Oxidation (M) _QFAKEEAFLM(Oxidation (M))_ ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant;nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1 29.081581746732265 0.240155558137004 1 [Q{I|L}]{M(Oxidation (M))|F}AES{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F} 11 -1 + 94.39 0 0 7.6829 7.6829 87.003 0 0 0 1.9449258300955705 12.40270483492408 1.9449258300955705 1.9449258300955705 0 0 1 1.9771008447974854 1.1368617341927687 [Q{I|L}]{M(Oxidation (M))|F}AES{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{I|L}ES{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};[Q{I|L}]{M(Oxidation (M))|F}AEAYGA{I|L}{M(Oxidation (M))|F};[Q{I|L}]{M(Oxidation (M))|F}AES{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AEAYGA{I|L}{M(Oxidation (M))|F};[Q{I|L}]{M(Oxidation (M))|F}AE{M(Oxidation (M))|F}SGA{I|L}{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}Q{I|L}S{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};[Q{I|L}]S{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F} 7.6829;7.5246;7.2007;7.0595;6.9127;6.9012;6.879;6.8409;6.7543;6.7542 -;-;-;-;-;-;-;-;-;- 24574 NaN NaN 590095.7 NaN 13937 3457 17395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17397 73.249 NaN 265800 35 0 19720 0.261 + 21678 PYYSKFILI 9 69 572.3261287977801 1142.6377046623602 2 572.326171875 MULTI HCD FTMS 0 0 0 17395 42047.97265625 0.012043346870340317 50 -1.3410720825195312 2 Unmodified _PYYSKFILI_ ENSG00000164815|ENST00000297431|ORC5 26.268140514670165 0.13340543277302316 1 PYY 3 6 42.396 0 0 3.7103 0 0 0 716.4325045221311 716.4325045221311 9.68256871239447 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 + PYY 3.7103 + + 271 + NaN NaN 117838.8 NaN 13938 3457 17395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17398 73.252 NaN 462910 35 0 55631 0.261 -1 KYMDIEFDF 9 77 612.2684187925513 1222.5222846519025 2 612.7540893554688 MULTI HCD FTMS 0 0 0 17395 24233.759765625 0.6249168972390543 5 -0.14342498779296875 3 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 19.361941925380144 0.1930734562688509 1 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 33.704 0 0 2.7569 0 0 666.3045455937275 0 666.3045455937275 0 13.561514948293478 0 0 0 1.2302046884880937 0 0 0 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.7569 + + 289 NaN NaN 154092.8 NaN 13939 3457 17395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17399 73.256 NaN 294540 35 0 63366 0.261 + 8403 GYPLWKVTF 9 63 555.8026984757278 1109.5908440182554 2 555.8028564453125 MULTI HCD FTMS 0 0 0 17395 72066.921875 0.01661986412847955 39 -1.0538406372070312 4 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 32.78568957990786 0.09846250359632436 1 [YG]{I|L}Q{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AW 9 7 + 44.9 0 0 4.0465 4.0465 84.818 0 0 0 7.446501976996487 7.676062401770309 7.446501976996487 9.208187539523749 0 0 1.5228787452803376 0.3807196863200844 0 [YG]{I|L}Q{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AW;[YG]{I|L}[AG]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AW;[YG][K{I|L}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[DA]|[EG]}{I|L}[R{I|L}]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}G[R{I|L}]T{M(Oxidation (M))|F};[{I|L}A][YN]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AW;{[CT]|[{M(Oxidation (M))|F}G]}A{[QN]|[E{I|L}]|[KN]}MK{I|L}{[DS]|[MA]|[CV]|TT};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}MK{I|L}{[DS]|[MA]|[CV]|TT};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}{[QV]|[N{I|L}]|[RA]|[KV]} 4.0465;3.2166;2.6279;1.7509;1.0456;0.98417;0.58072;0.53462;0.097106 -;-;-;-;-;-;-;-;- 553 + NaN NaN 125393.3 NaN 13940 3457 17395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17400 73.259 NaN 135160 35 0 6854.4 0.261 + 34063 YNIFTAVSCLM 11 55 631.3021240234375 NaN 0 631.3021240234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YNIFTAVSCLM_ REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|124|2|anti-sense 10.799506525563784 0.3114850535502259 1 DSDVM 5 -1 26.428 0 0 2.0981 0 0 162.08402392039744 547.2896730009576 709.3736969213551 0 0 0 0 0 0.5994850021680094 0 0 0 DSDVM 2.0981 - 80 + NaN NaN 98371.5 NaN 13941 3457 17395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17401 73.262 NaN 234200 35 0 25664 0.261 + 13278 KYMDINFDF 9 67 596.7710756229087 1191.5275983126173 2 596.7726440429688 MULTI HCD FTMS 0 0 0 17395 55415.88671875 0.023074355976985973 50 -1.3410720825195312 6 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 29.43715596616401 0.11383414875064776 1 WD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 3 49.087 0 0 4.1196 0 0 236.11609084297032 0 236.11609084297032 0 35.27443374663232 0 0 0 1.805462187404089 0 0 0 WD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1196 - 230 NaN NaN 120117.2 NaN 13942 3457 17395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17403 73.267 NaN 8036400 35 0 1178000 0.327 + 11631 IYVHDLLTF 9 99 560.8058039694926 1119.597055005785 2 560.8060913085938 MULTI HCD FTMS 0 0 0 17402 4148370.5 0.5711197014637903 -1 0.022735595703125 1 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 205.81641810085733 1.0367089511146742E-17 1 {I|L}YVHD{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 123.09 0 0 10.995 10.995 97.426 0 0 0 64.35611433591953 16.478174818886373 16.478174818886373 21.429125571355314 0 3.2614393726401687 1.6989700043360187 2.8979400086720375 0 + + {I|L}YVHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{I|L}{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{M(Oxidation (M))|F}{I|L};[Y{I|L}]VHDVVY{I|L};[Y{I|L}]VV{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};{I|L}[QA]EW{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHS{I|L}E{I|L}{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VVDHVY{I|L} 10.995;9.0806;8.0769;7.2726;7.0116;6.7815;6.2301;6.0695;5.9061;5.8496 +;+;-;-;-;-;-;-;-;- + 5718 + NaN NaN 468174.3 NaN 13943 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17404 73.272 NaN 1638300 35 0 195960 0.261 + 29531 TYVYMCHVGV 10 111 586.2676777977645 1170.5208026623288 2 586.2679443359375 MULTI HCD FTMS 0 0 0 17402 390089.6875 0.29608802988283495 -2 0.05211639404296875 2 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 34.10243960390752 0.1965851268881605 1 TYVY{M(Oxidation (M))|F}TN 7 5 77.573 0 0 6.6272 0 0 0 279.09617029361567 279.09617029361567 54.111913543060055 0 0 0 0 2.2416440611282624 2 0.3252574989159953 0 TYVY{M(Oxidation (M))|F}TN 6.6272 - 2216 + NaN NaN 332556.6 NaN 13944 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17405 73.275 NaN 730210 35 0 201120 0.261 + 23317 RISLPLPNF 9 62 528.8138732709568 1055.6131936087136 2 528.813720703125 MULTI HCD FTMS 0 0 0 17402 245645.40625 0.18870852850399986 10 -0.25726318359375 3 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 37.07464296494664 0.07877380486334713 1 [R{I|L}]S{I|L}[{I|L}P]PN{M(Oxidation (M))|F} 9 0 + 56.978 0 0 5.3976 5.3976 88.86 0 0 0 48.39423616905697 10.044570114042862 10.044570114042862 13.455612550363796 0 2.2887254899964358 0 0 0.4247425010840047 + + [R{I|L}]S{I|L}[{I|L}P]PN{M(Oxidation (M))|F};[R{I|L}]S{I|L}[{I|L}P]PGG{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HK]{[TV]|[{I|L}S]}PT{M(Oxidation (M))|F};[R{I|L}][KP][TP]PT{M(Oxidation (M))|F} 5.3976;4.1229;0.71845;0.18391 +;-;-;- + 241 + NaN NaN 210387.1 NaN 13945 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17406 73.278 NaN 941510 35 0 103420 0.261 + 6149 FPEHIFPAL 9 83 535.7874980933541 1069.560443253508 2 535.787353515625 MULTI HCD FTMS 0 0 0 17402 221276.75 0.015303871518625863 47 -1.269927978515625 4 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 48.345845343767074 0.03388484103555672 1 {I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PA{I|L} 7 4 44.958 0 0 4.2034 0 0 250.09521681953282 0 250.09521681953282 0 20.181919819825538 0 0 0 1.305462187404089 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PA{I|L} 4.2034 - 867 NaN NaN 223277.8 NaN 13946 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17407 73.282 NaN 452940 35 0 73086 0.261 + 31436 VYAVVRGLFL 10 68 568.8456994987378 1135.6768460642754 2 568.8450317382812 MULTI HCD FTMS 0 0 0 17402 170720.40625 0.4497857713302431 -1 0.022735595703125 5 Unmodified _VYAVVRGLFL_ ENSG00000138111|ENST00000238936|MFSD13A 68.08070601005525 0.01985953044443068 1 [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 10 0 + 82.357 0 0 7.2518 7.2518 91.192 0 0 0 16.46082806091883 65.36683765109139 16.46082806091883 9.771212547196626 0 2.774227503252014 1.6989700043360187 0 0 + + [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L};[YV]AVVR{[MS]|[{M(Oxidation (M))|F}A]}V{I|L};[YV]AVVR{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 7.2518;6.3914;5.931 +;-;- + 472 NaN NaN 170907.9 NaN 13947 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17408 73.285 NaN 559350 35 0 93594 0.261 + 893 AYANIISQF 9 63 513.7664430635639 NaN 0 513.7666015625 PEAK HCD FTMS 0 0 0 17402 112743.3984375 0.27572933456532256 -2 0.05211639404296875 6 Unmodified _AYANIISQF_ ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2 51.629811660486645 0.04111961458024335 1 {I|L}{I|L}SQ 4 5 37.652 0 0 3.6715 0 0 419.17954032459016 162.05599390201408 581.2355342266043 0 0 0 0 0 1.6861818737241734 0 0 0.4247425010840047 + {I|L}{I|L}SQ 3.6715 + + 146 + NaN NaN 170805.6 NaN 13948 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17409 73.288 NaN 235940 35 0 60061 0.261 + 10593 IPMPDFDL 8 50 482.2284074467927 962.4422619603854 2 482.2282409667969 MULTI HCD FTMS 0 0 0 17402 103161.328125 0.4824104928542901 -2 0.05211639404296875 7 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 53.57557251787612 0.1056313556323 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}[EP]{I|L} 8 5 + 39.759 0 0 4.1311 4.1311 89.342 0 0 0 2.6197263691282444 11.598878259206842 2.6197263691282444 39.75949072601743 0 0.805462187404089 1.3979400086720375 1.1861818737241734 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}[EP]{I|L} 4.1311 - 60 NaN NaN 127772.5 NaN 13949 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17410 73.292 NaN 893670 35 0 114270 0.261 -1 MGMLTNCVVM 10 84 594.2505405736524 1186.4865282141047 2 594.2501220703125 MULTI HCD FTMS 0 0 0 17402 130059.921875 0.32943271306356414 -1 0.022735595703125 8 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))GMLTNC(Carbamidomethyl (C))VVM(Oxidation (M))_ ENST00000426371.2_1_11:74065594-74065891:+|nuORF 5.731851221503515 0.44496410492002586 1 [YV]T 3 -1 24.538 0 0 2.0681 0 0 0 820.2835917729516 820.2835917729516 7.742275032520141 0 0 0 0 0.4247425010840047 1.2218487496163564 0 0 [YV]T 2.0681 - 1072 NaN NaN 225938.3 NaN 13950 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17411 73.295 NaN 473030 35 0 49668 0.261 + 17474 LYSSEQLLI 9 92 533.2952593563456 1064.575965779491 2 533.2951049804688 MULTI HCD FTMS 0 0 0 17402 62423.8125 0.24976307628540376 -1 0.022735595703125 9 Unmodified _LYSSEQLLI_ ENSG00000168209|ENST00000307365|DDIT4 52.268347100219714 0.028397529699942435 1 EAEC{I|L}{I|L}{I|L} 7 5 56.112 0 0 5.2708 0 0 275.16343886543126 0 275.16343886543126 0 30.852780643339543 0 0 0 0.7742275032520141 0 0.868415180652539 0 EAEC{I|L}{I|L}{I|L} 5.2708 - 7697 NaN NaN 171028.8 NaN 13951 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17412 73.298 NaN 168560 35 0 21475 0.262 + 30909 VQVVADVL 8 72 421.75138183200454 NaN 0 421.7516174316406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VQVVADVL_ ENSG00000198793|ENST00000361445|MTOR 5.760428011301431 0.38822285293237185 1 VV 2 6 10.969 0 0 1.3035 0 0 130.10663221694034 510.21900354556874 640.3256357625091 0 0 0 0 0 0 0 0 0 + VV 1.3035 + + 35 + NaN NaN 107498.6 NaN 13952 3458 17402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17414 73.303 NaN 785870 35 0 70600 0.327 -1 VSFNRTFLM 9 105 565.7856827655935 1129.556812597987 2 565.8035888671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _VSFNRTFLM(Oxidation (M))_ ENSG00000170054|ENST00000674397|SERPINA9;nc|ENSG00000170054|Q86WD7-2|SERPINA9;nc|ENSG00000170054|Q86WD7-5|SERPINA9;nc|ENSG00000170054|Q86WD7-6|SERPINA9;nc|ENSG00000170054|Q86WD7-7|SERPINA9 19.361941925380144 0.1930734562688509 1 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 -1 + 70.856 0 0 6.2729 6.2729 87.448 0 0 0 25.642492736872597 36.52319722879278 25.642492736872597 9.018637558036673 0 0.3054621874040891 2 0 0.6989700043360187 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]G{I|L}RT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YN]G{I|L}R{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YN]G{I|L}RVVY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][QA]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]G{I|L}[WE][HV]{I|L};K[C(Carbamidomethyl (C))H]TR{I|L}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};KMW[WH][VP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][QA]RT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[DS]|[MA]|[CV]|TT}[MN]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.2729;5.4745;5.0754;4.6701;2.49;2.3816;2.0676;1.8035;1.6916;1.6176 -;-;-;-;-;-;-;-;-;- 2830 NaN NaN 201454.5 NaN 13953 3459 17413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17415 73.307 NaN 514600 35 0 70336 0.261 + 6579 FPLDLDVKM 9 76 539.2863109526344 1076.5580689720687 2 539.2861938476562 MULTI HCD FTMS 0 0 0 17413 431703.46875 0.8563752404010668 5 -0.13004302978515625 2 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 65.47368725323818 0.010552856507075443 1 M{I|L}{I|L}D{I|L}DV 7 4 70.487 0 0 6.5474 0 0 0 274.1230867975219 274.1230867975219 38.34962195759409 0 0 0 0 2.1861818737241734 1.5228787452803376 0.4247425010840047 0 M{I|L}{I|L}D{I|L}DV 6.5474 - 605 + NaN NaN 160986.6 NaN 13954 3459 17413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17416 73.311 NaN 346430 35 0 55285 0.261 + 30423 VLPEHLILV 9 74 516.8264732974485 1031.638393661697 2 516.8265380859375 MULTI HCD FTMS 0 0 0 17413 202616.921875 0.5506205555935352 5 -0.13004302978515625 3 Unmodified _VLPEHLILV_ ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192 23.1484247019978 0.1603590852062899 1 V{I|L}V{I|L} 4 6 37.18 0 0 3.604 0 0 589.3185291974625 0 589.3185291974625 0 20.190775249321078 0 0 0 0.8252574989159953 0 0 0 V{I|L}V{I|L} 3.604 - 71 NaN NaN 128655.2 NaN 13955 3459 17413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17417 73.314 NaN 318430 35 0 47308 0.261 + 26230 SPVWQDQIL 9 52 543.2850713220885 1084.5555897109768 2 543.2852172851562 MULTI HCD FTMS 0 0 0 17413 242966.265625 1 0 0 4 Unmodified _SPVWQDQIL_ ENSG00000188419|ENST00000357749|CHM;ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM 22.65808497894818 0.16459551161911185 1 EGQWG{I|L}{I|L} 7 6 48.632 0 0 4.4841 0 0 283.15339858222814 0 283.15339858222814 0 34.68002299681771 0 0 0 1.6677353201839438 0 0 0.3494850021680094 EGQWG{I|L}{I|L} 4.4841 - 89 NaN NaN 133260.8 NaN 13956 3459 17413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17418 73.318 NaN 109460 35 0 9722.7 0.261 + -1 LYFQVMCGLF 10 44 639.3049926757812 NaN 0 639.3049926757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _LYFQVMC(Carbamidomethyl (C))GLF_ REV__ENSG00000205030|ENST00000378397|OR5L2;REV__ENSG00000279395|ENST00000625203|OR5L1 10.823927491677226 0.33092050725491123 1 P{I|L}D 3 -1 11.682 0 0 0.91512 0 0 68.02655165839981 880.3823336236936 948.4088852820935 0 0 0 0 0 0 0 0 0 P{I|L}D 0.91512 - 7 + NaN NaN 111656.5 NaN 13957 3459 17413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17419 73.321 NaN 167340 35 0 22324 0.264 + 16898 LYFLTVEI 8 53 499.28204345703125 NaN 0 499.28204345703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYFLTVEI_ tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1 16.942295170755138 0.3865212393897457 1 EV 2 7 17.276 0 0 1.7336 0 0 131.09162620673163 634.3216036432249 765.4132298499565 0 0 0 0 0 0.6307196863200843 0 0 0 EV 1.7336 - 17 + NaN NaN 108175.2 NaN 13958 3459 17413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17421 73.326 NaN 9262700 35 0 1704300 0.327 + 24213 RYFLPPYTF 9 81 602.3135920149654 1202.6126310967306 2 602.3138427734375 MULTI HCD FTMS 0 0 0 17420 5874062.5 0.5516452404763558 12 -0.320098876953125 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 85.64151623876279 0.004640175941193596 1 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 78.594 0 0 6.5352 6.5352 92.227 0 0 0 5.6424927368725974 48.94016261540408 5.6424927368725974 22.501225267834002 0 2.274227503252014 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F} 6.5352;4.6642;2.5821 +;-;- + 429 NaN NaN 529969 NaN 13959 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17422 73.33 NaN 2237000 35 0 356130 0.261 + 7538 FYAELYHII 9 109 584.8053094325448 1167.5960659318896 2 584.805419921875 MULTI HCD FTMS 0 0 0 17420 1529020.75 0.9389483813377484 -2 0.05869293212890625 2 Unmodified _FYAELYHII_ ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF 161.8943921545576 8.236690082142223E-09 1 {M(Oxidation (M))|F}YAE{I|L}YH{I|L}{I|L} 9 0 + 86.322 0 0 7.3932 7.3932 87.779 0 0 0 4.708566800635779 4.708566800635779 4.708566800635779 4.708566800635779 0 2.973197507588033 0 0.6747425010840047 0 + + {M(Oxidation (M))|F}YAE{I|L}YH{I|L}{I|L};[Y{M(Oxidation (M))|F}]AE{I|L}YH{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{I|L}YH{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{M(Oxidation (M))|F}{I|L}YH{I|L}{I|L};{[CP]|[EA]}Y{M(Oxidation (M))|F}{I|L}YH{I|L}{I|L};{M(Oxidation (M))|F}YAE{I|L}[H{I|L}]Y{I|L};[YT]VYPYH{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{[CP]|[EA]}YH{I|L}{I|L};[Y{M(Oxidation (M))|F}]A[Q{I|L}][WD]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[Q{I|L}][WD]{I|L}{I|L} 7.3932;6.9899;6.9417;6.1048;5.384;4.9089;4.6064;4.1098;2.6372;2.589 +;+;-;-;-;-;-;-;-;- + 4319 + NaN NaN 429858.7 NaN 13960 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17423 73.334 NaN 1117700 35 0 115670 0.261 + 4759 EYTRALFLL 9 80 563.3191115721968 1124.6236702111935 2 563.3193969726562 MULTI HCD FTMS 0 0 0 17420 1083960.75 0.6167457220784258 5 -0.1366729736328125 3 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 78.7280429016045 0.006263961847259105 1 [Y{I|L}]RD[VS]{M(Oxidation (M))|F}{I|L}{I|L} 9 5 + 51.326 0 0 4.5638 4.5638 82.433 0 0 0 0.6458996192598221 24.855312426617573 0.6458996192598221 3.7944822554545254 0 1 1.0457574905606752 1.4247425010840047 0 [Y{I|L}]RD[VS]{M(Oxidation (M))|F}{I|L}{I|L};[YE][RV][VS]{M(Oxidation (M))|F}{I|L}{I|L};[YE]TRA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE]TRA{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]RD[YV]A{I|L}{I|L};[YE][RV][YV]A{I|L}{I|L};[Y{I|L}][VG][R{I|L}]EY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TA][R{I|L}]EY{I|L} 4.5638;4.2264;4.0468;3.0907;2.9385;2.6011;0.70131;0.25522 -;-;+;-;-;-;-;- + 480 NaN NaN 254425.5 NaN 13961 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17424 73.337 NaN 1342100 35 0 133850 0.261 + 30072 VFTLKPLEF 9 90 547.318623812551 1092.6226946919019 2 547.3184814453125 MULTI HCD FTMS 0 0 0 17420 1067442.25 0.839709637477541 -2 0.05869293212890625 4 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 121.5340881639634 0.001118397630175091 1 V{M(Oxidation (M))|F}T{I|L}K[{I|L}P]E{M(Oxidation (M))|F} 9 0 + 83.611 0 0 7.6523 7.6523 89.662 0 0 0 47.91202772037167 15.330145895351848 15.330145895351848 8.182503180159344 0 2.579689690656103 0 1.274227503252014 0 + + V{M(Oxidation (M))|F}T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]{M(Oxidation (M))|F}V;[VP]{[TV]|[{I|L}S]}A{I|L}T{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ET]|[MV]}V{I|L}K[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}A{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V][VP]KE[Y{I|L}]V;[{M(Oxidation (M))|F}V][VP]K[Y{I|L}]EV;{[ET]|[MV]}V{I|L}K[NP][RH] 7.6523;6.9034;4.9085;3.9933;3.193;2.5702;2.2778;2.0081;1.8417;0.15306 +;+;-;-;-;-;-;-;-;- + 802 + NaN NaN 289444.2 NaN 13962 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17425 73.34 NaN 2565200 35 0 108360 0.261 + 16160 LPVDDNFSL 9 124 510.25605183240526 1018.4975507316105 2 510.2560119628906 MULTI HCD FTMS 0 0 0 17420 648659.8125 1 0 0 5 Unmodified _LPVDDNFSL_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000558761.5_1_15:50545740-50557820:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 28.494509381512117 0.11816142465008336 1 SY{I|L}EY{I|L}D 7 9 56.463 0 0 5.5437 0 0 0 132.0458925836547 132.0458925836547 21.67161236066933 0 0 0 0 0 2 0.5774509799928715 0 SY{I|L}EY{I|L}D 5.5437 - 8182 + NaN NaN 473853.7 NaN 13963 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17426 73.344 NaN 652670 35 0 59710 0.261 -1 PYMANVYLI 9 87 550.2789812655898 1098.5434095979795 2 550.2793579101562 MULTI HCD FTMS 0 0 0 17420 360562.875 1 0 0 6 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 36.04419817259434 0.08350412372117409 1 [{M(Oxidation (M))|F}V]D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L} 9 -1 + 56.859 0 0 5.1758 5.1758 85.39 0 0 0 7.147642715192504 35.02820042726753 7.147642715192504 8.45098040014257 0 1.3494850021680094 0 0 0.75 [{M(Oxidation (M))|F}V]D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}V{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L};[{M(Oxidation (M))|F}V]DN{[ES]|[DT]|[{I|L}C]}Y{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VN{[ES]|[DT]|[{I|L}C]}Y{I|L}{I|L};[{M(Oxidation (M))|F}V]DGG{[ES]|[DT]|[{I|L}C]}Y{I|L}{I|L};[{M(Oxidation (M))|F}V]D[Y{I|L}]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VGG{[ES]|[DT]|[{I|L}C]}Y{I|L}{I|L};[Y{I|L}]VV[NP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[Y{I|L}]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}V[Y{I|L}][KS]D{I|L} 5.1758;4.4065;4.0123;3.243;2.4914;1.7377;1.7221;1.0259;0.9684;0.92429 -;-;-;-;-;-;-;-;-;- 303 NaN NaN 180461.1 NaN 13964 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17427 73.347 NaN 449070 35 0 60979 0.261 -1 0 75 622.2948358044622 1242.5751186757243 2 622.294677734375 MULTI HCD FTMS 0 0 0 17420 124405.40625 0.06851794187436068 31 -0.8357009887695312 7 NaN NaN 1 RS[MD]Y{I|L}{M(Oxidation (M))|F} 7 -1 44.076 0 0 3.5472 0 0 312.1145191876969 0 312.1145191876969 0 18.133913886063944 0 0 0 0.8494850021680094 0 0.7059771852360797 0.5 RS[MD]Y{I|L}{M(Oxidation (M))|F} 3.5472 - 580 NaN NaN 159357.2 NaN 13965 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17428 73.35 NaN 466310 35 0 31515 0.261 + 11155 IYISKIVVEF 10 90 605.8575112321423 1209.7004695310845 2 605.8574829101562 MULTI HCD FTMS 0 0 0 17420 300126.6875 1 0 0 8 Unmodified _IYISKIVVEF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 51.487983226225225 0.0723780666322865 1 [Y{I|L}]{I|L}S[K{I|L}]VVE{M(Oxidation (M))|F} 10 0 + 78.65 0 0 6.5016 6.5016 89.683 0 0 0 11.760912590556813 11.760912590556813 11.760912590556813 9.515449934959719 0 2.579689690656103 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}S[K{I|L}]VVE{M(Oxidation (M))|F};[Y{I|L}]{I|L}S[K{I|L}]VEV{M(Oxidation (M))|F};[Y{I|L}]{I|L}S[K{I|L}]V{I|L}D{M(Oxidation (M))|F} 6.5016;5.715;4.5161 +;-;- + 228 NaN NaN 153608.8 NaN 13966 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17429 73.354 NaN 247090 35 0 29910 0.263 + 28887 TWASSIEAL 9 38 489.25080504415916 976.4870571551184 2 489.2514343261719 MULTI HCD FTMS 0 0 0 17420 176756.359375 1 0 0 9 Unmodified _TWASSIEAL_ ENSG00000153820|ENST00000392056|SPHKAP;nc|ENSG00000153820|Q2M3C7-2|SPHKAP 32.30548876998284 0.10066689432505688 1 {I|L}EA{I|L} 4 5 40.037 0 0 4.1001 0 0 532.2265492169937 0 532.2265492169937 0 40.03714405160309 0 0 0 1.2614393726401687 0 0 0 + {I|L}EA{I|L} 4.1001 + + 20 NaN NaN 131382.2 NaN 13967 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17430 73.357 NaN 151020 35 0 21946 0.261 -1 VPMEDINL 8 49 473.7313118513415 945.448070769483 2 473.7312316894531 MULTI HCD FTMS 0 0 0 17420 140897.3125 0.7478404509155241 12 -0.320098876953125 10 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 11.640296217721598 0.50814828952472 1 {I|L}N{I|L} 3 -1 30.445 0 0 3.2202 0 0 587.2253108187898 0 587.2253108187898 0 19.987737688117235 0 0 0 0.4247425010840047 0 0 0 {I|L}N{I|L} 3.2202 + + 15 NaN NaN 106468.2 NaN 13968 3460 17420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17432 73.362 NaN 56233000 35 0 8140600 0.327 + 26811 SYIEHIFEI 9 101 575.7920384064217 1149.5695238796434 2 575.7925415039062 MULTI HCD FTMS 0 0 0 17431 47349204 0.7621214108306822 -1 0.035919189453125 1 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 172.90653553480564 2.2447970467336844E-09 1 [YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L} 9 2 + 84.303 0 0 7.3335 7.3335 87.274 0 0 0 3.711375162600703 16.478174818886373 3.711375162600703 3.711375162600703 0 2.004432191740108 1.0969100130080565 1.7249073637206092 0 [YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VEH{I|L}E{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{M(Oxidation (M))|F}{I|L};[YT]VEH{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{I|L}{M(Oxidation (M))|F};[YT]V[PA]NP{M(Oxidation (M))|F}E{I|L};[YT]VEHE{M(Oxidation (M))|F}{I|L}{I|L};[YT]VEHE{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[PA]NP{M(Oxidation (M))|F}E{I|L} 7.3335;7.0106;6.4042;6.0814;5.6235;5.3007;5.0137;4.9218;4.9029;4.6908 -;+;-;-;-;-;-;-;-;- + 12874 NaN NaN 500957.8 NaN 13969 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17433 73.366 NaN 1396800 35 0 501480 0.264 + 9597 HSHGHGGH 8 66 413.1788874612395 NaN 0 413.1934509277344 PEAK HCD FTMS 0 0 0 17431 25896.587890625 0.9485248990904169 -3 0.09461212158203125 2 Unmodified _HSHGHGGH_ REV__ENSG00000162695|ENST00000357650|SLC30A7 2.577480529830294 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.48274 0 0 238.0234110535353 423.27241052526153 661.2958215787969 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.48274 - 7 + NaN NaN 286444.2 NaN 13970 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17434 73.37 NaN 665970 35 0 60680 0.261 + 8129 GMEEKSLFEI 10 109 591.7877521786655 1181.560951424131 2 591.7877197265625 MULTI HCD FTMS 0 0 0 17431 313364.3125 0.5263865783012567 1 -0.0260772705078125 3 Unmodified _GMEEKSLFEI_ REV__ENSG00000092439|ENST00000646667|TRPM7;REV__ENST00000560516.1_1_15:50866997-50867273:-|nuORF 43.77239144664712 0.11267038882370725 1 {I|L}{M(Oxidation (M))|F}E{I|L} 4 -1 42.295 0 0 3.5796 0 0 661.2736073224625 0 661.2736073224625 0 21.590640370550197 0 0 0 0.805462187404089 0 0.3807196863200844 0 {I|L}{M(Oxidation (M))|F}E{I|L} 3.5796 + + 2311 NaN NaN 192167.2 NaN 13971 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17435 73.373 NaN 1394500 35 0 172400 0.261 -1 HYGNCYIFN 9 100 594.2505405736524 1186.4865282141047 2 594.7661743164062 MULTI HCD FTMS 0 0 0 17431 114585.578125 0.49713048348472244 1 -0.0260772705078125 4 Carbamidomethyl (C) _HYGNC(Carbamidomethyl (C))YIFN_ ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B 4.3292370932331545 0.3181982124262546 1 {I|L}NY{I|L}RP[{M(Oxidation (M))|F}T] 8 -1 30.087 0 0 2.5358 0 0 163.93107661216465 0 163.93107661216465 0 8.65987537940164 0 0 0 0 0 0.5752574989159953 0.6989700043360187 {I|L}NY{I|L}RP[{M(Oxidation (M))|F}T] 2.5358 - 401 + NaN NaN 295104.9 NaN 13972 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17436 73.376 NaN 215560 35 0 21544 0.264 + -1 CVSSGSNP 8 60 404.16961921983085 806.3246855064617 2 404.1701354980469 MULTI HCD FTMS 0 0 0 17431 115160.3359375 0.011178230812078239 50 -1.3448333740234375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))VSSGSNP_ REV__ENST00000483926.5_1_1:27668800-27676624:+|nuORF 2.577480529830294 0.5381683276125971 1 {I|L} 1 -1 11.99 0 0 1.487 0 0 675.2298043802883 0 675.2298043802883 0 11.020599913279625 0 0 0 0 0 0 0 {I|L} 1.487 - 20 + NaN NaN 115082.7 NaN 13973 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17437 73.38 NaN 307980 35 0 34697 0.261 + 33232 YFETEDRAY 9 69 597.2592188095064 1192.5038846858126 2 597.25927734375 MULTI HCD FTMS 0 0 0 17431 21570.576171875 0.11350863481409108 1 -0.0260772705078125 6 Unmodified _YFETEDRAY_ REV__ENSG00000182899|ENST00000647248|RPL35A;REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF;REV__ENST00000485439.5_1_3:197677808-197681048:+|nuORF 4.75600775471527 0.31496297302216103 1 TD{M(Oxidation (M))|F}N 4 -1 20.191 0 0 1.6931 0 0 65.00249416022514 647.2874082131519 712.2899023733771 0 0 0 0 0 0 0 0 0.3252574989159953 TD{M(Oxidation (M))|F}N 1.6931 - 274 + NaN NaN 134432.8 NaN 13974 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17438 73.383 NaN 274940 35 0 56971 0.261 + 32558 WILPNVKPF 9 70 557.3263387715213 1112.6381246098424 2 557.3264770507812 MULTI HCD FTMS 0 0 0 17431 57011.01171875 0.39884453074204423 1 -0.0260772705078125 7 Unmodified _WILPNVKPF_ ENSG00000107518|ENST00000355044|ATRNL1;nc|ENSG00000107518|Q5VV63-2|ATRNL1 16.942295170755138 0.21397866736869717 1 {I|L} 1 8 11.99 0 0 1.0776 0 0 813.4748685341754 183.05625330142814 996.5311218356035 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.0776 + + 205 + NaN NaN 132378.9 NaN 13975 3461 17431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17440 73.388 NaN 1605100 35 0 160000 0.327 -1 QFAKEEAFLM 10 111 615.2952835052727 1228.5760140773452 2 615.3136596679688 MULTI HCD FTMS 0 0 0 17439 198707.484375 0.778005709899494 2 -0.04534912109375 1 Oxidation (M) _QFAKEEAFLM(Oxidation (M))_ ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant;nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1 32.78568957990786 0.20801173326193015 1 [YN]AK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SGA{I|L}{M(Oxidation (M))|F} 11 -1 + 71.736 0 0 5.839 5.839 85.478 0 0 0 5.87697034421204 16.219352629497884 5.87697034421204 5.87697034421204 0 0 1.5228787452803376 0.5796896906561032 1.1738773680566281 [YN]AK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SGA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};[YN]AK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SQ{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{I|L}ES{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AEAYGA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}Q{I|L}S{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AE{M(Oxidation (M))|F}SGA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AES{M(Oxidation (M))|F}GPS{M(Oxidation (M))|F};{[CP]|[EA]}K{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F} 5.839;5.3606;5.3037;5.0139;4.8706;4.8254;4.7981;4.7917;4.705;4.6964 -;-;-;-;-;-;-;-;-;- 12762 NaN NaN 337426.4 NaN 13976 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17441 73.392 NaN 617700 35 0 181330 0.264 + 3000 EAALEVVL 8 62 422.2447474600596 842.4749419869192 2 422.2447509765625 MULTI HCD FTMS 0 0 0 17439 365701.46875 0.4299843746222348 -3 0.08469390869140625 2 Unmodified _EAALEVVL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 67.03532852164291 0.03311693449179614 1 EVV{I|L} 4 4 49.993 0 0 5.934 0 0 384.20066166891536 0 384.20066166891536 0 33.79493455131808 0 0 0 1.5 0 0.3054621874040891 0 + EVV{I|L} 5.934 + + 49 + NaN NaN 170490.1 NaN 13977 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17442 73.396 NaN 1754900 35 0 166950 0.261 + 27335 SYRIIYNLF 9 98 594.8244137014566 1187.634274469713 2 594.8245849609375 MULTI HCD FTMS 0 0 0 17439 586426.4375 0.4338764127607111 -3 0.08469390869140625 3 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 80.6760300276096 0.005633624786464751 1 {[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 9 0 + 74.517 0 0 6.2744 6.2744 84.328 0 0 0 1.7478773067036002 8.084639142334737 1.7478773067036002 1.7478773067036002 0 2.360924374808178 0 0 0.805462187404089 + + {[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}YN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}NY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YGG{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}NY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}R{I|L}YN{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}YGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}GGY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}R{I|L}NY{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}GGY{I|L}{M(Oxidation (M))|F} 6.2744;6.1273;5.5521;5.4991;5.4049;5.3653;5.3519;4.7768;4.643;4.6296 +;-;-;-;-;-;-;-;-;- + 1175 NaN NaN 345687.4 NaN 13978 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17443 73.399 NaN 332350 35 0 100920 0.261 + 35021 YTFPTFKF 8 50 525.7681222265545 1049.521691519909 2 525.7684936523438 MULTI HCD FTMS 0 0 0 17439 123814.5 0.5815195144199686 1 -0.0260009765625 4 Unmodified _YTFPTFKF_ ENSG00000158163|ENST00000327532|DZIP1L;nc|ENSG00000158163|Q8IYY4-2|DZIP1L 5.760428011301431 0.5334459684533844 1 QNV{I|L} 4 8 28.047 0 0 2.6724 0 0 577.2565785138687 0 577.2565785138687 0 7.078343878162343 0 0 0 0 0 0 0 QNV{I|L} 2.6724 - 24 NaN NaN 137198.8 NaN 13979 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17444 73.402 NaN 560150 35 0 54307 0.261 + -1 HCHTLLVL 8 76 496.77040173474654 991.5262505362931 2 496.7701721191406 MULTI HCD FTMS 0 0 0 17439 238967.140625 0.7346722481765893 -3 0.08469390869140625 5 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HTLLVL_ REV__ENSG00000130766|ENST00000253063|SESN2;REV__SESN2|p.A197V|1|0.19|ENSG00000130766|chr1:28272633-28272633|C/T|missense_variant 32.116972079565 0.3321965280364247 1 {I|L}V{I|L} 3 -1 32.747 0 0 3.3027 0 0 648.2788563459 0 648.2788563459 0 20.541134294324124 0 0 0 0.805462187404089 0 0 0 {I|L}V{I|L} 3.3027 + + 151 NaN NaN 170856.2 NaN 13980 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17445 73.406 NaN 157190 35 0 17816 0.261 + 26231 SPVWQDQIL 9 51 543.2850713220885 1084.5555897109768 2 543.284423828125 MULTI HCD FTMS 0 0 0 17439 72670.4765625 0.2990969811202571 3 -0.074676513671875 6 Unmodified _SPVWQDQIL_ ENSG00000188419|ENST00000357749|CHM;ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM 19.361941925380144 0.1930734562688509 1 WG{I|L}{I|L} 4 6 37.735 0 0 3.4793 0 0 597.2911244123062 0 597.2911244123062 0 19.776296993281406 0 0 0 0.8807196863200843 0 0 0 WG{I|L}{I|L} 3.4793 - 33 NaN NaN 96510.7 NaN 13981 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17446 73.409 NaN 107590 35 0 6600 0.261 + 14570 LFKNDPLFF 9 51 570.8087270229721 1139.6029011127441 2 571.3869018554688 MULTI HCD FTMS 0 0 0 17439 23331.736328125 0.46310805021913204 -3 0.08469390869140625 7 Unmodified _LFKNDPLFF_ ENSG00000103642|ENST00000261893|LACTB;nc|ENSG00000103642|P83111-2|LACTB 9.38312468134398 0.279288223203164 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 27.206 0 0 2.3873 0 0 827.4557586340317 0 827.4557586340317 0 20.21652514092061 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3873 + + 21 + NaN NaN 99580.1 NaN 13982 3462 17439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17448 73.414 NaN 2407500 35 0 352860 0.327 + 11632 IYVHDLLTF 9 107 560.8058039694926 1119.597055005785 2 560.805908203125 MULTI HCD FTMS 0 0 0 17447 1676143 0.23076007549726377 4 -0.09436798095703125 1 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 225.63253280303684 3.884279688775432E-24 1 {I|L}YVHD{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 119.64 0 0 10.686 10.686 96.501 0 0 0 15.478597467076298 15.478597467076298 15.478597467076298 15.478597467076298 0 3.2614393726401687 1.6989700043360187 2.853917193908117 0 + + {I|L}YVHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{I|L}{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{M(Oxidation (M))|F}{I|L};[Y{I|L}]VV{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHDVVY{I|L};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};{I|L}YV[QP][VG]PT{M(Oxidation (M))|F};[Y{I|L}]VV{[YC]|[HE]}T{I|L}{M(Oxidation (M))|F} 10.686;9.3039;8.3002;7.4959;6.9147;6.7104;6.5053;6.0393;5.9847;5.911 +;+;-;-;-;-;-;-;-;- + 5060 + NaN NaN 448681.3 NaN 13983 3463 17447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17449 73.418 NaN 585600 35 0 69442 0.261 + 15305 LPAPFEESL 9 81 501.76115895763394 1001.5077649820679 2 501.7611389160156 MULTI HCD FTMS 0 0 0 17447 301228.28125 0.6234603574483498 -2 0.0520782470703125 2 Unmodified _LPAPFEESL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 97.07464715276575 0.004340583992084827 1 EES{I|L} 4 5 48.488 0 0 4.8415 0 0 525.2954762005857 0 525.2954762005857 0 18.873409493950675 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + EES{I|L} 4.8415 + + 440 NaN NaN 176622.3 NaN 13984 3463 17447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17450 73.422 NaN 714860 35 0 81680 0.261 + 6150 FPEHIFPAL 9 82 535.7874980933541 1069.560443253508 2 535.7872314453125 MULTI HCD FTMS 0 0 0 17447 200556.40625 0.013870817758699605 52 -1.3994827270507812 3 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}PA{I|L} 4 5 39.302 0 0 3.6746 0 0 623.3066216780352 0 623.3066216780352 0 19.296583177684127 0 0 0 1.2134679910804405 0 0 0 + {M(Oxidation (M))|F}PA{I|L} 3.6746 + + 395 NaN NaN 187621 NaN 13985 3463 17447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17451 73.425 NaN 272530 35 0 27709 0.261 + -1 YLFRMETNK 9 69 609.3030957622709 1216.5916385913417 2 609.3032836914062 MULTI HCD FTMS 0 0 0 17447 57408.3984375 0.24331221086233798 12 -0.3171844482421875 4 Oxidation (M) _YLFRM(Oxidation (M))ETNK_ REV__tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1 11.640296217721598 0.25978676193971967 1 [Y{I|L}]{M(Oxidation (M))|F}R{[NV]|[RG]}{[SA]|[TG]}T{M(Oxidation (M))|F} 10 -1 + 39.442 0 0 3.242 3.242 88.475 0 0 0 14.978109286651247 15.66946789630613 14.978109286651247 39.4420594384119 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F}R{[NV]|[RG]}{[SA]|[TG]}T{M(Oxidation (M))|F} 3.242 - 178 NaN NaN 121661.6 NaN 13986 3463 17447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17452 73.428 NaN 337460 35 0 38278 0.261 + 8093 GKGVGGGS 8 68 618.3214884482608 617.3142119816607 1 618.3209838867188 MULTI HCD FTMS 0 0 0 17447 93494.5078125 0.5968295656253852 2 -0.048675537109375 5 Unmodified _GKGVGGGS_ ENSG00000237441|ENST00000497454|RGL2;ENST00000483151.5_1_6:33261379-33266279:-|nuORF;ENST00000494550.5_1_6:33263795-33265760:-|nuORF;nc|ENSG00000237441|O15211-2|RGL2;RGL2|p.L729Pfs*28|1|0.24|ENSG00000237441|chr6:33292252-33292253|-/A|frameshift_variant 0.6903765706972694 0.5409681170271811 1 [WQ]VVS 5 6 + 1.0375 0 0 0.16807 0.16807 79.057 0 0 0 1.0374943753836152 1.0374943753836152 1.0374943753836152 1.0374943753836152 0 0 0 0 0 [WQ]VVS 0.16807 - 17 NaN NaN 150572.1 NaN 13987 3463 17447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17454 73.433 NaN 482020 35 0 26964 0.327 + 8555 HASFELWQL 9 89 565.7856827655935 1129.556812597987 2 565.8038940429688 MULTI HCD FTMS 0 0 0 17453 137272.5625 0.9463700812652216 4 -0.09122467041015625 1 Unmodified _HASFELWQL_ ENSG00000065060|ENST00000192788|BLTP3A 34.40172386719151 0.0910440009062557 1 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 9 + 58.927 0 0 5.2168 5.2168 83.79 0 0 0 22.63559966262001 11.028070073139403 11.028070073139403 4.370470067515505 0 0.3252574989159953 2 0 0.7134679910804405 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]G{I|L}RT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YN]G{I|L}[HA][VP]{I|L}{M(Oxidation (M))|F};[YN]G{I|L}[HA][VP]{M(Oxidation (M))|F}{I|L};[Y{I|L}][NG]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}WQQWQ{I|L};NP[DV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WQ{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}H]|[RQ]}{[SA]|[TG]}WQ{I|L};[Y{I|L}][NG]RT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}NT{M(Oxidation (M))|F}Y[KC]{I|L} 5.2168;4.8299;2.9462;2.5592;2.3742;2.3433;2.3041;2.0411;1.9873;1.8316 -;-;-;-;-;-;-;-;-;- 1912 NaN NaN 173151 NaN 13988 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17455 73.438 NaN 458270 35 0 40161 0.261 + 6580 FPLDLDVKM 9 80 539.2863109526344 1076.5580689720687 2 539.2847900390625 MULTI HCD FTMS 0 0 0 17453 143074.109375 0.2838177908691732 10 -0.27172088623046875 2 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM 9 0 + 72.613 0 0 6.7449 6.7449 90.884 0 0 0 7.343490028255729 52.386437589774886 7.343490028255729 12.197809668306178 0 2.5451140161145327 1.2218487496163564 0.7302046884880937 0.5 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}DVKM;M{I|L}{I|L}D{I|L}Q[TP]{M(Oxidation (M))|F};M{I|L}{I|L}D{I|L}[AG][TP]{M(Oxidation (M))|F};M{I|L}{I|L}D{[SA]|[TG]}[{I|L}P]A{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}Q{I|L}TM;{M(Oxidation (M))|F}P{I|L}D{I|L}QM[{I|L}T];M{I|L}{I|L}DP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}T];{M(Oxidation (M))|F}P{I|L}D{I|L}[AG]{I|L}TM;{M(Oxidation (M))|F}P{I|L}D{I|L}[AG]M[{I|L}T] 6.7449;5.6119;5.5644;4.709;4.5574;4.0063;3.6066;3.353;3.151;2.7512 +;+;-;-;-;-;-;-;-;- + 828 NaN NaN 158751.9 NaN 13989 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17456 73.441 NaN 390870 35 0 44850 0.261 + 29322 TYNPEIYVI 9 66 556.2873313252486 1110.560109717297 2 556.2882690429688 MULTI HCD FTMS 0 0 0 17453 121685.5 0.6173266494814308 -2 0.04534912109375 3 Unmodified _TYNPEIYVI_ ENSG00000164171|ENST00000296585|ITGA2 39.94969957227396 0.06557568441294001 1 [YV]Q[EP]TYV{I|L} 9 3 + 61.876 0 0 5.5716 5.5716 87.22 0 0 0 14.461499616092652 50.42219661254123 14.461499616092652 9.208187539523749 0 0.8494850021680094 1.2218487496163564 0.7059771852360797 0 [YV]Q[EP]TYV{I|L};[YV][AG][EP]TYV{I|L};[YN]{I|L}[EP]TYV{I|L};[Y{I|L}]N[EP]TYV{I|L};[Y{I|L}]GG[EP]TYV{I|L};[YT][PG]{[DA]|[EG]}{I|L}YV{I|L};[YT][PG][TP]TYV{I|L} 5.5716;4.7424;3.842;3.6582;2.829;2.7433;2.7227 -;-;-;-;-;-;- 358 NaN NaN 155620.6 NaN 13990 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17457 73.444 NaN 316880 35 0 41497 0.261 + 35805 YYPEYKLLF 9 66 618.3212154332588 1234.6278779333174 2 618.8245239257812 MULTI HCD FTMS 0 0 0 17453 71970.3671875 0.7267282957121312 4 -0.09122467041015625 4 Unmodified _YYPEYKLLF_ ENSG00000159720|ENST00000290949|ATP6V0D1 10.073929032068715 0.27331982688540024 1 YT{I|L}Q 4 7 47.167 0 0 3.8203 0 0 0 726.3369679121726 726.3369679121726 36.020599913279625 0 0 0 0 0 2 0 0 YT{I|L}Q 3.8203 - 143 + NaN NaN 128142.3 NaN 13991 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17458 73.448 NaN 133150 35 0 11091 0.261 + 9960 IEGFHEQLL 9 51 543.2850713220885 1084.5555897109768 2 543.2865600585938 MULTI HCD FTMS 0 0 0 17453 108374.5625 0.44604777630845227 5 -0.12744140625 5 Unmodified _IEGFHEQLL_ REV__ENSG00000186141|ENST00000334163|POLR3C;REV__POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant 14.838274106304384 0.23215694253501695 1 G{I|L}{I|L} 3 -1 29.693 0 0 2.7378 0 0 783.370409080275 0 783.370409080275 0 10.228787452803374 0 0 0 0.5 0 0 0 G{I|L}{I|L} 2.7378 - 17 NaN NaN 96386.9 NaN 13992 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17459 73.451 NaN 207610 35 0 29884 0.261 + 31437 VYAVVRGLFL 10 56 568.8456994987378 1135.6768460642754 2 568.845458984375 MULTI HCD FTMS 0 0 0 17453 64855.8984375 0.17087154924707104 5 -0.12744140625 6 Unmodified _VYAVVRGLFL_ ENSG00000138111|ENST00000238936|MFSD13A 58.678817012210395 0.04622659334010173 1 [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 10 0 + 67.127 0 0 5.9107 5.9107 88.74 0 0 0 7.4434157707161575 7.4434157707161575 7.4434157707161575 9.771212547196626 0 2.524227503252014 1.5228787452803376 0 0 + + [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L};[YV]AVVR{[MS]|[{M(Oxidation (M))|F}A]}V{I|L} 5.9107;5.0503 +;- + 97 NaN NaN 132319.1 NaN 13993 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17460 73.454 NaN 227770 35 0 19348 0.261 + 20842 PHYEVAESDF 10 61 597.2592188095064 1192.5038846858126 2 597.2583618164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PHYEVAESDF_ ENSG00000138131|ENST00000260702|LOXL4 6.2057823575117 0.44245551207394906 1 D{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 8 22.664 0 0 1.9005 0 0 166.0604562192962 0 166.0604562192962 0 18.05970632012567 0 0 0 0 0 0.4247425010840047 0 D{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 1.9005 - 69 + NaN NaN 116043 NaN 13994 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17461 73.458 NaN 104030 35 0 9273.6 0.263 -1 EIMCCFGCMSV 11 61 451.49737279034866 NaN 0 451.4976501464844 PEAK HCD FTMS 0 0 0 17453 31486.32421875 0.27628019493891504 -1 0.01934814453125 8 2 Carbamidomethyl (C),Oxidation (M) _EIMC(Carbamidomethyl (C))C(Carbamidomethyl (C))FGCM(Oxidation (M))SV_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 0.4545168274142398 0.3408308101233591 1 {I|L}Y 2 -1 10.969 0 0 1.2175 0 0 271.7243339715248 350.0848787897094 621.8092127612342 0 0 0 0 0 0 0 0 0 {I|L}Y 1.2175 - 7 + NaN NaN 102169.3 NaN 13995 3464 17453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17463 73.462 NaN 196360 35 0 23837 0.326 + 17475 LYSSEQLLI 9 71 533.2952593563456 1064.575965779491 2 533.2948608398438 MULTI HCD FTMS 0 0 0 17462 29173.376953125 0.11672520600125472 6 -0.153839111328125 1 Unmodified _LYSSEQLLI_ ENSG00000168209|ENST00000307365|DDIT4 22.736283301280096 0.1639198954644489 1 Q{I|L}{I|L}{I|L} 4 5 42.167 0 0 3.9609 0 0 579.2545033185562 0 579.2545033185562 0 31.682437647924218 0 0 0 1.066901560044258 0 0 0.3054621874040891 + Q{I|L}{I|L}{I|L} 3.9609 + + 126 NaN NaN 123525.6 NaN 13996 3465 17462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17465 73.469 NaN 5489300 35 0 1028300 0.327 + 24214 RYFLPPYTF 9 80 602.3135920149654 1202.6126310967306 2 602.313720703125 MULTI HCD FTMS 0 0 0 17464 3409104.75 0.3201560095117879 18 -0.5236740112304688 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 78.7280429016045 0.006263961847259105 1 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 78.109 0 0 6.495 6.495 91.699 0 0 0 7.147642715192504 50.228787452803374 7.147642715192504 18.69402840463316 0 1.9247425010840047 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}[KS]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}[KS]{[QV]|[N{I|L}]|[RA]|[KV]}E{M(Oxidation (M))|F} 6.495;4.9405;2.1854;2.16;1.8434 +;-;-;-;- + 447 NaN NaN 530524.6 NaN 13997 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17466 73.473 NaN 1295000 35 0 185670 0.261 + 8862 HLYNIKDHE 9 107 584.7916398760178 NaN 0 584.8054809570312 PEAK HCD FTMS 0 0 0 17464 42061.26953125 1 0 0 2 Unmodified _HLYNIKDHE_ ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B 15.847184025352803 0.21527282152051216 1 VAE{I|L}YH 6 7 34.399 0 0 2.9462 0 0 211.05700277809632 241.15535913638908 452.2123619144854 0 0 0 0 0 0 0 0.3252574989159953 0 VAE{I|L}YH 2.9462 - 1283 + NaN NaN 293087.4 NaN 13998 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17467 73.477 NaN 604560 35 0 57836 0.261 + 30073 VFTLKPLEF 9 81 547.318623812551 1092.6226946919019 2 547.3184814453125 MULTI HCD FTMS 0 0 0 17464 427849.90625 0.3365706104213014 4 -0.1141204833984375 3 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 110.5527297667825 0.0028521687250969148 1 V{M(Oxidation (M))|F}T{I|L}K[{I|L}P]E{M(Oxidation (M))|F} 9 0 + 87.374 0 0 7.9967 7.9967 93.63 0 0 0 60.75765943524473 16.478174818886373 16.478174818886373 14.68765315847925 0 2.6549471895720984 0 1.274227503252014 0 + + V{M(Oxidation (M))|F}T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]{M(Oxidation (M))|F}V 7.9967;6.6525;4.7486;3.6267 +;+;-;- + 197 + NaN NaN 175368.8 NaN 13999 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17468 73.48 NaN 1529600 35 0 102240 0.261 + 11558 IYSRYFFSF 9 108 615.3035583687683 1228.5925638043366 2 615.3153076171875 MULTI HCD FTMS 0 0 0 17464 288800.46875 0.3880054956160102 -4 0.08154296875 4 Unmodified _IYSRYFFSF_ ENSG00000137975|ENST00000370565|CLCA2 96.0343551737317 0.004367843638107011 1 {I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 2 + 72.079 0 0 5.8668 5.8668 83.476 0 0 0 5.902087898231528 5.902087898231528 5.902087898231528 1.2763625255165323 0 2.111407999752478 1.3010299956639813 1.329689690656103 0 {I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CP]|[EA]}QA{M(Oxidation (M))|F}Y{I|L}GA{I|L}{M(Oxidation (M))|F};{I|L}YRSY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[{M(Oxidation (M))|F}V]A{I|L}{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]A{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[NV]|[RG]}VEGA{I|L}{M(Oxidation (M))|F};{I|L}YRCV{[MG]|[TS]}Q{I|L}{M(Oxidation (M))|F} 5.8668;5.7629;5.6218;5.3864;5.0518;5.0281;4.9479;4.9461;4.9307;4.9085 -;-;+;-;-;-;-;-;-;- + 16102 + NaN NaN 318690.2 NaN 14000 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17469 73.483 NaN 786960 35 0 90126 0.261 + 14363 LEDPLNSPKY 10 90 588.3019272703833 1174.5893016075665 2 588.7830810546875 MULTI HCD FTMS 0 0 0 17464 42632.98046875 0.16035408758207792 9 -0.2616424560546875 5 Unmodified _LEDPLNSPKY_ ENSG00000141664|ENST00000269499|ZCCHC2;nc|ENSG00000141664|Q9C0B9-2|ZCCHC2 18.1463463914782 0.3413772152514074 1 YY{I|L}NE{I|L}QS 8 8 69.691 0 0 5.9332 0 0 0 161.1009625688229 161.1009625688229 4.393878342760047 0 0 0 0 0 1.5228787452803376 0.5796896906561032 1.5044321917401078 YY{I|L}NE{I|L}QS 5.9332 - 1468 NaN NaN 201339 NaN 14001 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17470 73.487 NaN 349300 35 0 47968 0.261 -1 0 67 622.2948358044622 1242.5751186757243 2 622.7973022460938 MULTI HCD FTMS 0 0 0 17464 88256.5859375 0.06719755954963103 36 -1.002410888671875 6 NaN NaN 1 Y{I|L}{M(Oxidation (M))|F} 3 -1 34.45 0 0 2.7725 0 0 801.350014911356 0 801.350014911356 0 14.784700126913389 0 0 0 0.8252574989159953 0 0 0 Y{I|L}{M(Oxidation (M))|F} 2.7725 - 201 NaN NaN 143462.2 NaN 14002 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17471 73.49 NaN 157770 35 0 37770 0.264 + -1 YCVAVVTCTLC 11 47 449.2021255570546 NaN 0 449.2022705078125 PEAK HCD FTMS 0 0 0 17464 15151.677734375 0.138174555869859 1 -0.03882598876953125 7 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))VAVVTC(Carbamidomethyl (C))TLC(Carbamidomethyl (C))_ REV__ENSG00000124155|ENST00000279036|PIGT;REV__nc|ENSG00000124155|Q969N2-2|PIGT;REV__nc|ENSG00000124155|Q969N2-3|PIGT;REV__nc|ENSG00000124155|Q969N2-4|PIGT;REV__nc|ENSG00000124155|Q969N2-5|PIGT;REV__nc|ENSG00000124155|Q969N2-6|PIGT 1.3296431237094175 0.3383483288439026 1 W 1 -1 0.9691 0 0 0.10811 0 0 560.360048377978 146.92351709537346 707.2835654733515 0 0 0 0 0 0 0 0 0 W 0.10811 - 1 + NaN NaN 103735.7 NaN 14003 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17472 73.493 NaN 240980 35 0 31839 0.261 + 28890 TWDPALAQI 9 66 507.7667565100948 1013.5189600869896 2 507.7659912109375 MULTI HCD FTMS 0 0 0 17464 48764.58203125 0.500617524362116 1 -0.03882598876953125 8 Unmodified _TWDPALAQI_ ENSG00000139278|ENST00000266659|GLIPR1;nc|ENSG00000139278|P48060-2|GLIPR1 47.748688679222035 0.03472022231463587 1 {[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[PA]{I|L}AQ{I|L} 9 3 + 45.011 0 0 4.441 4.441 85.347 0 0 0 3.0616397380371154 30.406658241942488 3.0616397380371154 9.208187539523749 0 1.6643943297944483 0 0.6694451763165201 0 {[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[PA]{I|L}AQ{I|L};{[QN]|[E{I|L}]|[KN]}[CG][PA]{I|L}AQ{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[PA]{I|L}A[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}A[HC]{I|L}AQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F} 4.441;3.5325;3.5325;2.6677;0.47785 -;-;-;-;- 101 NaN NaN 124964 NaN 14004 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17473 73.497 NaN 222710 35 0 22471 0.261 + -1 QQVVQMQVRC 10 62 617.8077420994591 1233.6009312657181 2 617.8079223632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _QQVVQM(Oxidation (M))QVRC_ REV__ENSG00000114861|ENST00000649528|FOXP1;REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENSG00000137166|ENST00000307972|FOXP4;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2;REV__nc|ENSG00000137166|Q8IVH2-2|FOXP4;REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4;REV__nc|ENSG00000285708|Q9H334-3|FOXP1;REV__nc|ENSG00000285708|Q9H334-4|FOXP1;REV__nc|ENSG00000285708|Q9H334-6|FOXP1;REV__nc|ENSG00000285708|Q9H334-7|FOXP1;REV__nc|ENSG00000285708|Q9H334-8|FOXP1 3.2813086475875832 0.45793521633868084 1 [WE]P 3 -1 8.072 0 0 0.65434 0 0 0 818.3900850885374 818.3900850885374 0.11316845856768687 0 0 0 0 0 0 0 0 [WE]P 0.65434 - 54 + NaN NaN 113746.4 NaN 14005 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17474 73.5 NaN 225920 35 0 33095 0.263 -1 QSEIQAMK 8 59 475.73438419191297 949.454215450626 2 475.7345275878906 MULTI HCD FTMS 0 0 0 17464 44147.765625 0.4985632232077963 1 -0.03882598876953125 10 Oxidation (M) _QSEIQAM(Oxidation (M))K_ ENSG00000101213|ENST00000542869|PTK6 21.74664581756881 0.4337896562907935 1 {[QS]|[NT]}E{I|L} 4 -1 24.62 0 0 2.5931 0 0 0 489.2137729059572 489.2137729059572 2.6303901859925887 0 0 0 0 0 0 0.23965182871044374 1.079689690656103 {[QS]|[NT]}E{I|L} 2.5931 + + 118 NaN NaN 119964 NaN 14006 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17475 73.503 NaN 264580 35 0 46393 0.261 + 23318 RISLPLPNF 9 63 528.8138732709568 1055.6131936087136 2 528.81396484375 MULTI HCD FTMS 0 0 0 17464 156842.921875 0.12048911251845996 18 -0.5236740112304688 11 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 17.11289562659939 0.2125047172822487 1 NP{M(Oxidation (M))|F} 3 7 34.922 0 0 3.3082 0 0 679.438825278903 0 679.438825278903 0 30 0 0 0 1 0 0 0.3494850021680094 NP{M(Oxidation (M))|F} 3.3082 - 84 + NaN NaN 129937.8 NaN 14007 3466 17464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17477 73.508 NaN 1732700 35 0 133160 0.327 + 5764 FPAHILDCL 9 106 514.7650308414508 1027.5155087497014 2 514.7654418945312 MULTI HCD FTMS 0 0 0 17476 917030.8125 0.7298764425170977 2 -0.05242156982421875 1 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 179.2298980043202 1.129651853483471E-12 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AH{I|L}{I|L}DC{I|L} 9 0 + 77.547 0 0 7.547 7.547 87.039 0 0 0 0.13992205048818107 30.5956360176486 0.13992205048818107 2.557135633741254 0 2.4049471895720984 1.3979400086720375 0.6109243748081782 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AH{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{M(Oxidation (M))|F}C{I|L};{I|L}MHA{I|L}[PA]E{M(Oxidation (M))|F};{M(Oxidation (M))|F}PHA{I|L}{I|L}DC{I|L};{I|L}MAH{I|L}[PA]E{M(Oxidation (M))|F};{M(Oxidation (M))|F}PAH{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}A{I|L}DC{I|L};{M(Oxidation (M))|F}SD{I|L}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F} 7.547;7.2981;7.2297;7.0964;7.0757;6.9423;6.9015;6.7594;6.4452;6.3425 +;-;-;-;-;+;-;-;-;- + 2429 NaN NaN 346424.4 NaN 14008 3467 17476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17478 73.513 NaN 1848300 35 0 431830 0.261 + 32168 VYSQFITQL 9 100 549.795499584766 1097.576446236332 2 549.7954711914062 MULTI HCD FTMS 0 0 0 17476 737865.3125 0.5503083324002922 -3 0.07501983642578125 2 Unmodified _VYSQFITQL_ ENSG00000113522|ENST00000378823|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 139.78183599554657 1.962818552322152E-05 1 [YV]SQ{M(Oxidation (M))|F}{I|L}TQ{I|L} 9 0 + 92.142 0 0 8.395 8.395 92.106 0 0 0 12.608728575180635 75.12491488720718 12.608728575180635 9.208187539523749 0 2.4634679910804405 0.8860566476931632 1.5673851849885576 0.6139829889124311 + + [YV]SQ{M(Oxidation (M))|F}{I|L}TQ{I|L};[YV]SQ{M(Oxidation (M))|F}{I|L}T[AG]{I|L};[YV]S[AG]{M(Oxidation (M))|F}{I|L}TQ{I|L};[YV]S[AG]{M(Oxidation (M))|F}{I|L}T[AG]{I|L};{[DA]|[EG]}[YK]{M(Oxidation (M))|F}{I|L}TQ{I|L};[YV]SQ[YV]VQ{I|L};[YV]SQ[YV]V[AG]{I|L};[YV]S[AG][YV]VQ{I|L};[YV]SQ[YV]{I|L}N{I|L};[YV]SQ{M(Oxidation (M))|F}[DV]K{I|L} 8.395;7.5561;7.2597;6.1617;4.9461;4.6679;3.829;3.5326;3.432;2.8009 +;-;-;-;-;-;-;-;-;- + 3925 NaN NaN 369308.4 NaN 14009 3467 17476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17479 73.516 NaN 169820 35 0 9528.8 0.261 + 11156 IYISKIVVEF 10 67 605.8575112321423 1209.7004695310845 2 605.8580932617188 MULTI HCD FTMS 0 0 0 17476 66763.90625 0.2224524143658501 7 -0.1967010498046875 3 Unmodified _IYISKIVVEF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 30.7034409873982 0.22608124881558994 1 [Y{I|L}]{I|L}C 4 7 31.655 0 0 2.6168 0 0 0 714.4196261041624 714.4196261041624 2.728787452803374 0 0 0 0 0.5 1.5228787452803376 0 0 [Y{I|L}]{I|L}C 2.6168 - 61 + NaN NaN 108090.7 NaN 14010 3467 17476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17480 73.52 NaN 172870 35 0 51536 0.264 + 14712 LHFLSAQN 8 46 465.24751692448024 NaN 0 464.7603454589844 PEAK HCD FTMS 0 0 0 17476 9690.2529296875 0.9828429709597934 -2 0.04569244384765625 4 Unmodified _LHFLSAQN_ ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 4.3292370932331545 0.38822285293237185 1 {I|L} 1 7 3.9794 0 0 0.42859 0 0 565.3014475679074 247.0721377008422 812.3735852687496 0 0 0 0 0 0 0 0 0 + {I|L} 0.42859 + + 5 + NaN NaN 118162.5 NaN 14011 3467 17476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17482 73.524 NaN 15801000 35 0 1968200 0.327 + 26812 SYIEHIFEI 9 109 575.7920384064217 1149.5695238796434 2 575.7913818359375 MULTI HCD FTMS 0 0 0 17481 9843873 0.15844461458735526 6 -0.1804962158203125 1 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 188.57702930522862 4.893362302778831E-13 1 [YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L} 9 2 + 82.921 0 0 7.2132 7.2132 87.598 0 0 0 4.960762528683702 16.478174818886373 4.960762528683702 4.960762528683702 0 1.8481362441963327 1.0969100130080565 1.8098943791441968 0 [YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VEH{I|L}E{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{M(Oxidation (M))|F}{I|L};[YT]VEH{I|L}E{I|L}{M(Oxidation (M))|F};[YT]VEHE{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{I|L}{M(Oxidation (M))|F};[YT]VEHE{I|L}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}N{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EHE{M(Oxidation (M))|F}{I|L}{I|L} 7.2132;6.7817;6.1906;5.759;5.3371;4.9518;4.9056;4.8413;4.724;4.5203 -;+;-;-;-;-;-;-;-;- + 11549 NaN NaN 516240.2 NaN 14012 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17483 73.529 NaN 1731700 35 0 230330 0.261 + 27336 SYRIIYNLF 9 103 594.8244137014566 1187.634274469713 2 594.8244018554688 MULTI HCD FTMS 0 0 0 17481 772067.875 0.5712260201652063 3 -0.09194183349609375 2 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 93.16586880292088 0.00444300900000894 1 {I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 6 3 68.493 0 0 5.7672 0 0 406.1963729000419 0 406.1963729000419 0 42.55063163131986 0 0 0 2.2302046884880937 0 0 0.805462187404089 + {I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 5.7672 + + 494 NaN NaN 344682.1 NaN 14013 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17484 73.532 NaN 529180 35 0 167030 0.264 + 3001 EAALEVVL 8 53 422.2447474600596 842.4749419869192 2 422.24481201171875 MULTI HCD FTMS 0 0 0 17481 397605.125 0.46749604699180064 3 -0.09194183349609375 3 Unmodified _EAALEVVL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 49.66892048692302 0.12981580074710167 1 EVV{I|L} 4 4 46.938 0 0 5.5715 0 0 384.2013074557433 0 384.2013074557433 0 25.969100130080562 0 0 0 1.5 0 0 0 + EVV{I|L} 5.5715 + + 51 + NaN NaN 163455.6 NaN 14014 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17485 73.536 NaN 2040600 35 0 130840 0.261 + 11559 IYSRYFFSF 9 122 615.3035583687683 1228.5925638043366 2 615.3028564453125 MULTI HCD FTMS 0 0 0 17481 515638.28125 0.6927637193282565 -2 0.05503082275390625 4 Unmodified _IYSRYFFSF_ ENSG00000137975|ENST00000370565|CLCA2 96.0343551737317 0.004367843638107011 1 {I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 2 + 81.579 0 0 6.64 6.64 85.28 0 0 0 14.53002870265749 14.53002870265749 14.53002870265749 2.2454626555970805 0 2.2619229975844686 1.5228787452803376 1.5471062485323515 0 {I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CP]|[EA]}QA{M(Oxidation (M))|F}Y{I|L}GA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[TP]Y{I|L}GA{I|L}{M(Oxidation (M))|F};{I|L}YRSY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[NV]|[RG]}VEGA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[{M(Oxidation (M))|F}V]A{I|L}{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 6.64;6.4572;6.395;5.4573;5.3717;5.2213;5.1215;5.095;5.0385;4.9763 -;-;+;-;-;-;-;-;-;- + 28138 + NaN NaN 394921.3 NaN 14015 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17486 73.539 NaN 1269800 35 0 458180 0.264 -1 0 75 413.1934236862167 824.3722944392334 2 413.1935119628906 MULTI HCD FTMS 0 0 0 17481 450237.28125 0.3394539415278309 20 -0.55926513671875 5 NaN NaN 1 {I|L} 1 -1 13.099 0 0 1.589 0 0 693.2777032300522 0 693.2777032300522 0 11.505149978319906 0 0 0 0 0 0 0 {I|L} 1.589 - 47 + NaN NaN 266839.8 NaN 14016 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17487 73.542 NaN 599190 35 0 78878 0.261 + -1 LFTPCPSSL 9 86 511.2549282412626 1020.4953035493252 2 511.2548522949219 MULTI HCD FTMS 0 0 0 17481 145623.71875 0.1857129899249418 26 -0.7222366333007812 6 Carbamidomethyl (C) _LFTPC(Carbamidomethyl (C))PSSL_ REV__ENST00000286692.8_1_1:111682220-111682499:-|nuORF 16.942295170755138 0.21397866736869717 1 DV{I|L} 3 -1 23.594 0 0 2.3121 0 0 675.3058338849625 0 675.3058338849625 0 4.297574495662467 0 0 0 0.3494850021680094 0 0.23965182871044374 0 DV{I|L} 2.3121 - 1174 NaN NaN 173282.4 NaN 14017 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17488 73.546 NaN 326270 35 0 46022 0.261 -1 0 78 622.2948358044622 1242.5751186757243 2 622.2947387695312 MULTI HCD FTMS 0 0 0 17481 86258.1484375 0.047507829273541725 39 -1.0610733032226562 7 NaN NaN 1 S{I|L}{M(Oxidation (M))|F} 3 -1 36.867 0 0 2.967 0 0 877.4026966779312 0 877.4026966779312 0 26.409328277719766 0 0 0 0.5 0 0.805462187404089 0 S{I|L}{M(Oxidation (M))|F} 2.967 - 159 NaN NaN 132176.1 NaN 14018 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17489 73.549 NaN 313620 35 0 34926 0.262 + 28891 TWDPALAQI 9 66 507.7667565100948 1013.5189600869896 2 507.76751708984375 MULTI HCD FTMS 0 0 0 17481 81919.2109375 0.8409831658343448 3 -0.09194183349609375 8 Unmodified _TWDPALAQI_ ENSG00000139278|ENST00000266659|GLIPR1;nc|ENSG00000139278|P48060-2|GLIPR1 45.69961567697781 0.039180348357221985 1 {I|L}AQ{I|L} 4 5 41.23 0 0 4.068 0 0 570.2431507794937 0 570.2431507794937 0 18.14535912855625 0 0 0 1.2302046884880937 0 0 0 + {I|L}AQ{I|L} 4.068 + + 331 NaN NaN 130050.5 NaN 14019 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17490 73.552 NaN 202470 35 0 55510 0.261 -1 ELGCFLAGAL 10 37 525.7681222265545 1049.521691519909 2 525.7672729492188 MULTI HCD FTMS 0 0 0 17481 70501.1328125 0.33112264330254304 7 -0.20661163330078125 9 Carbamidomethyl (C) _ELGC(Carbamidomethyl (C))FLAGAL_ ENSG00000150403|ENST00000434316|TMCO3 3.5964929083625545 0.45626689593999237 1 V{I|L} 2 -1 20.969 0 0 1.998 0 0 819.35495601196 0 819.35495601196 0 17.870156338638594 0 0 0 0 0 0 0 V{I|L} 1.998 - 8 NaN NaN 109245.8 NaN 14020 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17491 73.556 NaN 101250 35 0 10014 0.261 -1 LEVPDMNI 8 41 473.7313118513415 945.448070769483 2 473.7309265136719 MULTI HCD FTMS 0 0 0 17481 35321.98046875 0.18747842192504086 20 -0.55926513671875 10 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 1 {I|L}N{I|L} 3 -1 34.693 0 0 3.6694 0 0 587.2252119406654 0 587.2252119406654 0 22.88364391835536 0 0 0 0.4247425010840047 0 0 0.4247425010840047 {I|L}N{I|L} 3.6694 - 20 NaN NaN 99310 NaN 14021 3468 17481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17493 73.561 NaN 1414700 35 0 152030 0.327 + 21429 PVTFINEGPF 10 113 560.787505759583 1119.560458585966 2 560.8057861328125 MULTI HCD FTMS 0 0 0 17492 117148.3125 0.7858643012414206 -1 0.03621673583984375 1 Unmodified _PVTFINEGPF_ ENSG00000116194|ENST00000234816|ANGPTL1 32.30548876998284 0.21217886106551395 1 [Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F} 9 8 + 57.362 0 0 5.1236 5.1236 83.205 0 0 0 3.4948500216800937 10.387503096606139 3.4948500216800937 3.4948500216800937 0 0 1.6989700043360187 0.6549471895720985 0 [Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[YV]{I|L}HD{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[YV]V{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{I|L}{M(Oxidation (M))|F};[YV]{I|L}HD{I|L}T{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}{I|L}{I|L}[{M(Oxidation (M))|F}T]{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[YV]V{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[TP][WK]D{I|L}{I|L}T{M(Oxidation (M))|F} 5.1236;4.8114;4.3533;4.2987;4.2229;3.9108;3.8823;3.8673;3.8127;3.7128 -;-;-;-;-;-;-;-;-;- 4096 NaN NaN 312679.5 NaN 14022 3469 17492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17494 73.565 NaN 366600 35 0 20902 0.261 -1 YTCRAHNEL 9 93 582.2667103356036 1162.5188677380072 2 582.781982421875 MULTI HCD FTMS 0 0 0 17492 46193.25 0.22542821836120666 10 -0.28510284423828125 2 Carbamidomethyl (C) _YTC(Carbamidomethyl (C))RAHNEL_ ENSG00000167178|ENST00000453268|ISLR2 24.020572477871973 0.15282392193088168 1 [{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F}TNE{I|L} 9 -1 + 41.978 0 0 3.611 3.611 80.781 0 0 0 2.77188410237045 29.759490726017432 2.77188410237045 3.0102999566398054 0 1.8737125054200234 0 0.816901560044258 0 [{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F}TNE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VY{M(Oxidation (M))|F}TNE{I|L};[{M(Oxidation (M))|F}E]TYET{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VYET{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VW[QP]NE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VYETAR{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[WY]{M(Oxidation (M))|F}E{I|L} 3.611;3.352;1.2491;0.99016;0.72209;0.68732;0.39841 -;-;-;-;-;-;- 524 NaN NaN 133839 NaN 14023 3469 17492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17495 73.569 NaN 321660 35 0 66264 0.262 + -1 HCHTLLVL 8 51 496.77040173474654 991.5262505362931 2 496.7705383300781 MULTI HCD FTMS 0 0 0 17492 128357.4453125 0.3946176560982483 4 -0.11809539794921875 3 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HTLLVL_ REV__ENSG00000130766|ENST00000253063|SESN2;REV__SESN2|p.A197V|1|0.19|ENSG00000130766|chr1:28272633-28272633|C/T|missense_variant 32.116972079565 0.3321965280364247 1 {I|L}{I|L}V{I|L} 4 -1 38.443 0 0 3.8772 0 0 535.1949330060562 0 535.1949330060562 0 27.412581433031846 0 0 0 1 0 0 0 {I|L}{I|L}V{I|L} 3.8772 + + 98 NaN NaN 132529.3 NaN 14024 3469 17492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17496 73.572 NaN 191530 35 0 20521 0.262 -1 PDGSSKGC 8 51 404.16961921983085 806.3246855064617 2 404.16998291015625 MULTI HCD FTMS 0 0 0 17492 91073.9765625 0.008840248013360646 58 -1.5794601440429688 4 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 N 1 -1 0.9691 0 0 0.12019 0 0 554.2645791605618 134.99102197818596 689.2556011387477 0 0 0 0 0 0 0 0 0 N 0.12019 - 4 + NaN NaN 104039 NaN 14025 3469 17492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17497 73.575 NaN 256340 35 0 14035 0.261 + -1 YELCGSLVEL 10 77 591.7877521786655 1181.560951424131 2 591.7871704101562 MULTI HCD FTMS 0 0 0 17492 64994.62890625 0.10917739816948967 9 -0.2556915283203125 5 Carbamidomethyl (C) _YELC(Carbamidomethyl (C))GSLVEL_ REV__ENSG00000206113|ENST00000635017|CFAP99;REV__ENST00000511731.5_1_4:2428286-2451670:+|nuORF 19.256988751693697 0.33098864134661865 1 {I|L}YEEE{I|L} 6 -1 31.911 0 0 2.7008 0 0 387.17973525215 0 387.17973525215 0 17.25264052139508 0 0 0 0.3252574989159953 0 0.3252574989159953 0 {I|L}YEEE{I|L} 2.7008 - 525 NaN NaN 113400 NaN 14026 3469 17492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17498 73.579 NaN 164860 35 0 12524 0.261 + 21679 PYYSKFILI 9 53 572.326419776722 NaN 0 572.3260498046875 PEAK HCD FTMS 0 0 0 17492 42220.9140625 0.42855466246190765 3 -0.0853118896484375 6 Unmodified _PYYSKFILI_ ENSG00000164815|ENST00000297431|ORC5 26.268140514670165 0.145325121643443 1 TY 2 8 20.969 0 0 1.8351 0 0 159.09127096000446 716.4367159479124 875.5279869079168 0 0 0 0 0 1 0 0 0 TY 1.8351 - 42 + NaN NaN 110679.9 NaN 14027 3469 17492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17500 73.584 NaN 892690 35 0 79774 0.327 + 3743 ENDTEALEV 9 110 510.23098114773614 NaN 0 510.24810791015625 PEAK HCD FTMS 0 0 0 17499 24449.951171875 1 0 0 1 Unmodified _ENDTEALEV_ ENSG00000188263|ENST00000695950|IL17REL;nc|ENSG00000188263|Q6ZVW7-2|IL17REL 25.399314129420986 0.1511568710901456 1 {I|L}DAPQ 5 7 28.989 0 0 2.8464 0 0 131.05840631338168 360.1185701959594 491.1769765093411 0 0 0 0 0 0.3807196863200844 0 0.2742275032520141 0.28872548999643577 {I|L}DAPQ 2.8464 - 745 + NaN NaN 219674.1 NaN 14028 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17501 73.588 NaN 753970 35 0 72677 0.261 + 4814 EYVRALFDF 9 86 580.292799092149 1158.571045251098 2 580.2926025390625 MULTI HCD FTMS 0 0 0 17499 252846.5 0.6474986425563874 -2 0.05908966064453125 2 Unmodified _EYVRALFDF_ ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK 125.0377797344192 0.0009059125702818869 1 [YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 75.948 0 0 6.5554 6.5554 90.388 0 0 0 1.3249518196119254 1.3249518196119254 1.3249518196119254 11.774400170273566 0 2.4071406706489746 0 0.805462187404089 0 + + [YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYT{I|L}AR[EP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[KG]A{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YY{I|L}TAR[EP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[KQ]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][KG]A{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}[KQ]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][KQ]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}[KQ]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE]VR[{M(Oxidation (M))|F}T][TP]{M(Oxidation (M))|F} 6.5554;5.5391;4.7071;4.2405;4.0168;3.6904;3.5126;2.9963;2.4922;1.8869 +;-;-;-;-;-;-;-;-;- + 939 + NaN NaN 197309.6 NaN 14029 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17502 73.591 NaN 225330 35 0 22658 0.261 + 15306 LPAPFEESL 9 44 501.76115895763394 1001.5077649820679 2 501.7609558105469 MULTI HCD FTMS 0 0 0 17499 121235.6328125 0.25092468295175435 5 -0.14752197265625 3 Unmodified _LPAPFEESL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 46.020951573049366 0.037705236580089195 1 EES{I|L} 4 5 47.933 0 0 4.7861 0 0 525.2951402347271 0 525.2951402347271 0 28.469100130080562 0 0 0 1.3252574989159953 0 0.4247425010840047 0 + EES{I|L} 4.7861 + + 39 NaN NaN 115355.5 NaN 14030 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17503 73.595 NaN 542160 35 0 150800 0.261 + -1 NYLKGHPMTAQ 11 64 638.3117120173835 1274.6088711015668 2 638.3114624023438 MULTI HCD FTMS 0 0 0 17499 212759.96875 1 0 0 4 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 20.41453444215458 0.279209903849948 1 [YN]{I|L} 3 -1 44.507 0 0 3.4918 0 0 0 881.3956163150727 881.3956163150727 23.29567163872703 0 0 0 0 1 1.6989700043360187 0 0.7059771852360797 [YN]{I|L} 3.4918 + + 130 NaN NaN 160054.3 NaN 14031 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17504 73.598 NaN 564250 35 0 42712 0.261 + 32620 WLPEEPEGR 9 97 556.7712546941323 NaN 0 556.7889404296875 PEAK HCD FTMS 0 0 0 17499 12669.3349609375 0.5751456328757018 2 -0.06243896484375 5 Unmodified _WLPEEPEGR_ ENSG00000204946|ENST00000434415|ZNF783 16.942295170755138 0.2079222001251384 1 VY{I|L} 3 9 10.802 0 0 0.97181 0 0 132.06092828164918 601.2281588190061 733.2890871006553 0 0 0 0 0 0 0 0 0 VY{I|L} 0.97181 - 596 + NaN NaN 185601.2 NaN 14032 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17505 73.601 NaN 236840 35 0 21771 0.261 + 7222 FSSALDEIEEL 11 59 626.8001835895802 1251.5858142459604 2 627.2996826171875 MULTI HCD FTMS 0 0 0 17499 90921.1171875 1 0 0 6 Unmodified _FSSALDEIEEL_ ENSG00000179833|ENST00000313349|SERTAD2 24.990960013464015 0.23933535780272686 1 {[QN]|[E{I|L}]|[KN]}EY{[QS]|[NT]}{I|L}EE{I|L} 10 7 + 50.45 0 0 4.0309 4.0309 88.24 0 0 0 3.221784748895651 29.480844613864647 3.221784748895651 23.750612633917 0 1.3494850021680094 0 0 0 {[QN]|[E{I|L}]|[KN]}EY{[QS]|[NT]}{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}EY{[QS]|[NT]}{I|L}[HS]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EY{[QS]|[NT]}PHH{I|L};{[QN]|[E{I|L}]|[KN]}E{[WT]|[RM]}[W{M(Oxidation (M))|F}]E{I|L};{[QN]|[E{I|L}]|[KN]}E{[WT]|[RM]}[HQ]Y{M(Oxidation (M))|F} 4.0309;2.1332;1.7939;1.4489;0.80884 -;-;-;-;- 123 NaN NaN 133067.7 NaN 14033 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17506 73.605 NaN 72687 35 0 7357.5 0.264 + 2427 DPSLSPGPL 9 43 441.731952968332 NaN 0 441.7320251464844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _DPSLSPGPL_ REV__ENST00000509591.1_1_5:138725014-138725390:-|nuORF 4.3292370932331545 0.2742679634796037 1 D 1 -1 3.9794 0 0 0.45146 0 0 554.3194834739703 209.08022485904533 763.3997083330156 0 0 0 0 0 0 0 0 0 D 0.45146 + + 2 + NaN NaN 96236.8 NaN 14034 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17507 73.608 NaN 69995 35 0 5891.4 0.261 + -1 YVMIALLPGWC 11 42 641.3235473632812 NaN 0 641.3235473632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _YVM(Oxidation (M))IALLPGWC_ REV__ENSG00000118432|ENST00000369501|CNR1;REV__nc|ENSG00000118432|P21554-2|CNR1;REV__nc|ENSG00000118432|P21554-3|CNR1 3.5964929083625545 0.33191792882328314 1 M 1 -1 5.4846 0 0 0.42929 0 0 260.17137565650336 883.3631685846311 1143.5345442411344 0 0 0 0 0 0 0 0 0 M 0.42929 + + 2 + NaN NaN 93844.2 NaN 14035 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17508 73.611 NaN 65629 35 0 4446.7 0.264 + -1 LLMMICCV 8 47 471.22159486950034 NaN 0 470.7608947753906 PEAK HCD FTMS 0 0 0 17499 33805.19140625 1 0 0 9 Oxidation (M) _LLM(Oxidation (M))MICCV_ REV__ENSG00000187701|ENST00000460972|OR2T27;REV__nc|ENSG00000227152|P0C7T2|OR2T7 2.8892196856762586 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.74325 0 0 262.0454288029559 562.2796994686496 824.3251282716055 0 0 0 0 0 0 0 0 0 {I|L} 0.74325 + + 7 + NaN NaN 101350.4 NaN 14036 3470 17499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17510 73.616 NaN 3061500 35 0 528220 0.327 + 24215 RYFLPPYTF 9 96 602.3135920149654 1202.6126310967306 2 602.313720703125 MULTI HCD FTMS 0 0 0 17509 1364261.625 0.12812060344876972 23 -0.6302947998046875 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 85.64151623876279 0.004640175941193596 1 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 10 7 76.476 0 0 6.3592 0 0 0 60.99569078885762 60.99569078885762 51.721675119240516 0 0 0 0 1.8807196863200843 1.6989700043360187 1.9559771852360797 0 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 6.3592 - 1282 NaN NaN 548972.4 NaN 14037 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17511 73.621 NaN 2353900 35 0 393180 0.262 + 1189 AYLKAIVLF 9 96 519.3233459979147 1036.6321390626292 2 519.3233032226562 MULTI HCD FTMS 0 0 0 17509 720162 0.09135281928445353 -4 0.10814666748046875 2 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 85.35673624503755 0.00464763827098139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 82.035 0 0 7.9136 7.9136 89.986 0 0 0 15.040646113899072 68.93553046518285 15.040646113899072 8.010299956639813 0 3.048455006504028 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[{I|L}V]A{I|L}{M(Oxidation (M))|F};[{I|L}A]YKA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}{M(Oxidation (M))|F}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[{I|L}V]A{M(Oxidation (M))|F}{I|L};[{I|L}A]YKA{I|L}V{M(Oxidation (M))|F}{I|L};[K{I|L}]YAA{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}A]YKA{I|L}{I|L}V{M(Oxidation (M))|F} 7.9136;7.1408;6.923;5.4993;5.4904;5.4361;4.7266;4.7177;4.6604;4.4999 +;-;-;-;-;-;-;-;-;- + 729 NaN NaN 443266.9 NaN 14038 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17512 73.624 NaN 437940 35 0 38732 0.261 + 19913 NYFLWTEKF 9 80 624.3087289434097 1246.6029049536194 2 624.3087158203125 MULTI HCD FTMS 0 0 0 17509 139264.09375 0.17514060724724198 -4 0.10814666748046875 3 Unmodified _NYFLWTEKF_ ENSG00000100351|ENST00000344138|GRAP2 78.06048673739656 0.006479972202176041 1 [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 9 0 + 103.24 0 0 8.2819 8.2819 97.441 0 0 0 31.65282857807391 16.478174818886373 16.478174818886373 82.9439039511412 0 2.305462187404089 2 0.3494850021680094 1.110924374808178 + + [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};[YN][RH][HV]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{I|L}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[HS];[RH]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[WK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L}[HN]K{M(Oxidation (M))|F} 8.2819;1.6283;1.5896;0.60946;0.15393;0.02923 +;-;-;-;-;- + 481 NaN NaN 161537 NaN 14039 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17513 73.628 NaN 193200 35 0 33886 0.261 + 35752 YYLRTYINE 9 46 617.8077420994591 1233.6009312657181 2 618.3214721679688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYLRTYINE_ ENSG00000115850|ENST00000264162|LCT 2.302733041254933 0.33356062215410776 1 Q{I|L}[MN] 4 7 13.812 0 0 1.1197 0 0 729.3638172834 0 729.3638172834 0 8.327731244245342 0 0 0 0 0 0 0 Q{I|L}[MN] 1.1197 - 14 NaN NaN 114792.8 NaN 14040 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17514 73.631 NaN 329310 35 0 36805 0.261 + 11805 KEIYSDPLF 9 95 556.2873313252486 1110.560109717297 2 557.3088989257812 MULTI HCD FTMS 0 0 0 17509 23652.265625 0.32327202125070753 2 -0.06237030029296875 5 Unmodified _KEIYSDPLF_ REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 11.640296217721598 0.25978676193971967 1 VY{NN|[MP]|[D{I|L}]|[EV]}D{I|L}P{M(Oxidation (M))|F} 8 -1 16.04 0 0 1.4443 0 0 130.09015540071852 0 130.09015540071852 0 -1.9185629683273362 -1.9185629683273362 0 0 0 0 0.28872548999643577 0 VY{NN|[MP]|[D{I|L}]|[EV]}D{I|L}P{M(Oxidation (M))|F} 1.4443 - 190 + NaN NaN 147447.5 NaN 14041 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17515 73.634 NaN 418560 35 0 34191 0.261 -1 QADPFLGLAM 10 78 539.7660822902329 1077.5176116472658 2 539.7650756835938 MULTI HCD FTMS 0 0 0 17509 123978.6484375 0.7887635026693447 -3 0.09194183349609375 6 Oxidation (M) _QADPFLGLAM(Oxidation (M))_ ENSG00000180739|ENST00000333430|S1PR5 72.96794272382148 0.014068588219715357 1 [WQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}G{I|L}A{M(Oxidation (M))|F} 9 -1 + 68.478 0 0 6.3552 6.3552 84.465 0 0 0 37.412581433031846 12.548181095651856 12.548181095651856 1.7389777797880583 0 2.6861818737241734 0 0.2742275032520141 0 [WQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}G{I|L}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R[HK]G{I|L}A{M(Oxidation (M))|F};[MN]{I|L}{[CP]|[EA]}{I|L}G{I|L}A{M(Oxidation (M))|F};[TA][KG]D[QA]G{I|L}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VG{I|L}Y[YT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VG[HK]K{M(Oxidation (M))|F}{I|L};[WQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[Q{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R[HK][Q{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R[HK]K{M(Oxidation (M))|F}{I|L};[MN]{I|L}{[CP]|[EA]}{I|L}GV[MT] 6.3552;6.1938;5.2899;4.12;3.9602;3.9313;3.7552;3.4329;3.2561;3.1915 -;-;-;-;-;-;-;-;-;- 997 + NaN NaN 156678.8 NaN 14042 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17516 73.638 NaN 290220 35 0 12998 0.261 + 4716 EYQKVWNLF 9 87 613.813882011029 1225.613211088858 2 613.8141479492188 MULTI HCD FTMS 0 0 0 17509 61137.0625 0.4971917133274331 10 -0.288360595703125 7 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 32.037481411007896 0.10189719824197178 1 WN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 5 23.104 0 0 1.8851 0 0 647.3289500751684 0 647.3289500751684 0 12.161903266879717 0 0 0 0.9916440611282625 0 0 0 + WN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.8851 + + 257 + NaN NaN 114858.1 NaN 14043 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17517 73.641 NaN 91470 35 0 11993 0.264 + 22623 QVHSAKLP 8 50 440.2574401766359 878.5003274200718 2 440.7604675292969 MULTI HCD FTMS 0 0 0 17509 16303.474609375 0.6076267193956241 1 -0.0295867919921875 8 Unmodified _QVHSAKLP_ ENSG00000054179|ENST00000355097|ENTPD2;ENST00000460614.1_1_9:139943111-139943842:-|nuORF;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;nc|ENSG00000054179|Q9Y5L3-3|ENTPD2 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 8 0.48455 0 0 0.055157 0 0 552.3736868925373 176.06037317447502 728.4340600670123 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.055157 - 6 + NaN NaN 96646.4 NaN 14044 3471 17509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17519 73.646 NaN 4747700 35 0 402630 0.327 + 7486 FVYQSLTQI 9 144 549.795499584766 1097.576446236332 2 549.8131713867188 MULTI HCD FTMS 0 0 0 17518 861766.1875 0.6427150125207743 2 -0.05896759033203125 1 Unmodified _FVYQSLTQI_ REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF 53.832793166522166 0.026208976789938845 1 KT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}] 8 -1 49.075 0 0 4.4713 0 0 131.06838047348668 0 131.06838047348668 0 19.271081482726373 0 0 0 0.75 0 1.2134679910804405 1.3065533887547016 KT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}] 4.4713 - 8948 + NaN NaN 813215.1 NaN 14045 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17520 73.65 NaN 1917500 35 0 269650 0.261 + 35726 YYLNEIQSF 9 98 588.7822778758658 1175.5500028185315 2 588.7822875976562 MULTI HCD FTMS 0 0 0 17518 1210505.625 0.7612044266928721 2 -0.05896759033203125 2 Unmodified _YYLNEIQSF_ ENSG00000160284|ENST00000291672|SPATC1L;nc|ENSG00000160284|Q9H0A9-2|SPATC1L 232.37328098223372 3.7806638009258832E-25 1 YY{I|L}NE{I|L}QS{M(Oxidation (M))|F} 9 0 + 131.55 0 0 11.191 11.191 94.273 0 0 0 20.482099529372277 57.75576261223691 20.482099529372277 9.208187539523749 0 3.274227503252014 1.5228787452803376 1.329689690656103 1.5669015600442577 + + YY{I|L}NE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}QAY;YY{I|L}NE{I|L}TN{M(Oxidation (M))|F};YY{I|L}NE{I|L}[AG]AY;YY{I|L}GGE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}QAY;YY{I|L}NE{I|L}TGG{M(Oxidation (M))|F};[YV][YQ]E{I|L}QS{M(Oxidation (M))|F} 11.191;10.407;10.248;9.7166;9.3384;8.9333;8.7831;8.7739;8.5551;8.5344 +;-;-;-;-;-;-;-;-;- + 4567 NaN NaN 373028.6 NaN 14046 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17521 73.654 NaN 2456400 35 0 223390 0.261 + 11633 IYVHDLLTF 9 124 560.8058039694926 1119.597055005785 2 561.3212280273438 MULTI HCD FTMS 0 0 0 17518 280658.84375 0.05818530263592987 13 -0.37640380859375 3 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 125.62461146993168 0.0008703235425492373 1 PV{M(Oxidation (M))|F}{I|L}[PS]{I|L}T{M(Oxidation (M))|F} 9 6 62.125 0 0 5.5489 0 0 100.01615361771003 0 100.01615361771003 0 14.625750533254958 0 0 0 1.4247425010840047 0 1.1758337024346173 0 PV{M(Oxidation (M))|F}{I|L}[PS]{I|L}T{M(Oxidation (M))|F} 5.5489 - 7735 + NaN NaN 452342.9 NaN 14047 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17522 73.657 NaN 615800 35 0 43612 0.261 + 5765 FPAHILDCL 9 83 514.7650308414508 1027.5155087497014 2 514.765625 MULTI HCD FTMS 0 0 0 17518 370177.71875 0.29462913653225226 7 -0.19979095458984375 4 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 131.29775728308752 0.0005262696486345744 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HA{I|L}{I|L}DC{I|L} 9 2 + 79.713 0 0 7.7578 7.7578 88.573 0 0 0 5.144979867444221 5.144979867444221 5.144979867444221 5.144979867444221 0 2.504432191740108 1.2218487496163564 0.28872548999643577 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HA{I|L}{I|L}DC{I|L};{M(Oxidation (M))|F}PHA{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PAH{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}A{I|L}{I|L}DC{I|L};{M(Oxidation (M))|F}SD{I|L}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}PA{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{I|L}{I|L}DC{I|L} 7.7578;7.2571;6.8809;6.7816;6.5297;6.307;6.2975;6.0924;5.9616;5.4968 -;-;-;-;+;-;-;-;-;- + 1043 NaN NaN 172770.8 NaN 14048 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17523 73.661 NaN 886200 35 0 205780 0.261 -1 MYIMLNIRI 9 83 599.8185143383213 NaN 0 599.8023071289062 PEAK HCD FTMS 0 0 0 17518 14447.734375 0.36066560415891435 3 -0.0850830078125 5 2 Oxidation (M) _M(Oxidation (M))YIM(Oxidation (M))LNIRI_ ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9 9.347437153973935 0.2499504662953367 1 VH{M(Oxidation (M))|F}{I|L}YP 6 -1 21.86 0 0 1.8253 0 0 131.1274825402382 307.075605711849 438.2030882520872 0 0 0 0 0 0 0 0 0 VH{M(Oxidation (M))|F}{I|L}YP 1.8253 - 477 + NaN NaN 222967.2 NaN 14049 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17524 73.664 NaN 572020 35 0 66347 0.261 + -1 FGIARMVFPL 10 93 583.8228734562865 1165.631193979373 2 584.805419921875 MULTI HCD FTMS 0 0 0 17518 22007.439453125 0.403325920286299 3 -0.0850830078125 6 Oxidation (M) _FGIARM(Oxidation (M))VFPL_ REV__ENSG00000158023|ENST00000288912|CFAP251 10.073929032068715 0.4168838835836452 1 VAE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}W 8 -1 40.112 0 0 3.4413 0 0 209.12009886394168 0 209.12009886394168 0 1.0720996964786877 0 0 0 0.6747425010840047 0 0 0 VAE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}W 3.4413 - 840 + NaN NaN 162746.6 NaN 14050 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17525 73.667 NaN 180510 35 0 14818 0.261 + 30074 VFTLKPLEF 9 59 547.318623812551 1092.6226946919019 2 547.3186645507812 MULTI HCD FTMS 0 0 0 17518 89438.0625 0.07035697063571228 10 -0.29161834716796875 7 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 57.72198328787511 0.020768266150574023 1 K{I|L}TEV 5 7 53.672 0 0 4.9122 0 0 504.25813491035314 0 504.25813491035314 0 30.713337517843655 0 0 0 1.774227503252014 0 0.4247425010840047 0 K{I|L}TEV 4.9122 - 91 NaN NaN 116806.9 NaN 14051 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17526 73.671 NaN 174850 35 0 27197 0.261 -1 MPDIDFNL 8 54 490.7234369639857 979.4323209947714 2 490.7233581542969 MULTI HCD FTMS 0 0 0 17518 91795.1171875 0.7500642833359208 12 -0.34711456298828125 8 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 15.847184025352803 0.47719562709667024 1 D{M(Oxidation (M))|F}N{I|L} 4 -1 36.186 0 0 3.6946 0 0 472.20030409980626 0 472.20030409980626 0 20.70107520596089 0 0 0 0.4247425010840047 0 0 0 D{M(Oxidation (M))|F}N{I|L} 3.6946 + + 44 NaN NaN 115864.3 NaN 14052 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17527 73.674 NaN 846750 35 0 104440 0.261 + 1200 AYLKFLDQF 9 90 572.8059954988838 1143.5974380645675 2 572.805908203125 MULTI HCD FTMS 0 0 0 17518 219620.796875 0.21042747056848424 -4 0.12152862548828125 9 Unmodified _AYLKFLDQF_ ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2 145.12958885780327 1.3974915176135797E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F} 9 0 + 102.91 0 0 8.9989 8.9989 92.97 0 0 0 3.5518865468274896 66.92516497630791 3.5518865468274896 9.208187539523749 0 3.1307196863200843 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}K{I|L}{[ES]|[DT]|[{I|L}C]};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L}S{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}[K{I|L}]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}{M(Oxidation (M))|F}K{I|L}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]N{I|L}{M(Oxidation (M))|F}K{I|L}S{M(Oxidation (M))|F} 8.9989;8.1937;7.4602;5.4526;3.9447;3.465;2.689;2.341;2.2079;2.0139 +;-;-;-;-;-;-;-;-;- + 1095 NaN NaN 217589.2 NaN 14053 3472 17518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17529 73.679 NaN 6271300 35 0 729890 0.327 + 3971 EQSLCLLLCE 10 111 575.7790029674118 1149.5434530016234 2 575.7921752929688 MULTI HCD FTMS 0 0 0 17528 749757.5 0.8304533242618499 1 -0.02618408203125 1 Unmodified _EQSLCLLLCE_ ENST00000369869.1_1_1:110032306-110035219:+|nuORF;ENST00000497545.5_1_1:110032306-110034363:+|nuORF 29.84058131909904 0.23356904650364865 1 [YT]VY{M(Oxidation (M))|F}TM{I|L} 8 9 54.403 0 0 4.7325 0 0 0 128.04377173389665 128.04377173389665 10.377909666399269 0 0 0 0 0 1.0969100130080565 1.8307808920067157 0 [YT]VY{M(Oxidation (M))|F}TM{I|L} 4.7325 - 12849 NaN NaN 512265.1 NaN 14054 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17530 73.683 NaN 1330000 35 0 68296 0.261 + 11560 IYSRYFFSF 9 101 615.3035583687683 1228.5925638043366 2 615.3035888671875 MULTI HCD FTMS 0 0 0 17528 220339.703125 0.2960279672845932 3 -0.08182525634765625 2 Unmodified _IYSRYFFSF_ ENSG00000137975|ENST00000370565|CLCA2 72.58957779350692 0.008250269663349257 1 [YN]AWVPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 10 6 + 76.684 0 0 6.2416 6.2416 85.149 0 0 0 3.539624234944725 16.53212513775344 3.539624234944725 3.539624234944725 0 1 1.5228787452803376 0.3252574989159953 0.5629529932484498 [YN]AWVPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[{M(Oxidation (M))|F}V]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWVPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YN][{M(Oxidation (M))|F}V]AVWPS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[NV]|[RG]}VWPS{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]AYP;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}AAAVWPS{M(Oxidation (M))|F};[YN][{M(Oxidation (M))|F}V]AVWAYP 6.2416;5.9535;5.3302;5.0421;4.9726;4.8973;4.7282;4.7233;4.5756;4.2905 -;-;-;-;-;-;-;-;-;- 8789 NaN NaN 295452.8 NaN 14055 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17531 73.687 NaN 447200 35 0 44533 0.261 + 29532 TYVYMCHVGV 10 79 586.2676777977645 1170.5208026623288 2 586.2677612304688 MULTI HCD FTMS 0 0 0 17528 164769.375 0.12506416137641688 13 -0.362945556640625 3 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 26.88365393820708 0.25965138844209146 1 [YT]VY{M(Oxidation (M))|F}TN 7 5 67.585 0 0 5.7739 0 0 0 279.0969637506469 279.0969637506469 50.11062274299093 0 0 0 0 2.2530834337684316 2 0.2614393726401688 0 [YT]VY{M(Oxidation (M))|F}TN 5.7739 - 457 + NaN NaN 146764.4 NaN 14056 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17532 73.69 NaN 700830 35 0 90801 0.261 + 27337 SYRIIYNLF 9 76 594.8244137014566 1187.634274469713 2 594.8243408203125 MULTI HCD FTMS 0 0 0 17528 218167.375 0.16141441107252408 8 -0.22599029541015625 4 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 65.47368725323818 0.010552856507075443 1 {I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 6 3 67.211 0 0 5.6593 0 0 406.19624526191564 0 406.19624526191564 0 49.93115345883339 0 0 0 2.1989700043360187 0 0 0.805462187404089 + {I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 5.6593 + + 224 NaN NaN 185875.8 NaN 14057 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17533 73.693 NaN 664300 35 0 76574 0.261 + 6151 FPEHIFPAL 9 82 535.7874980933541 1069.560443253508 2 535.7871704101562 MULTI HCD FTMS 0 0 0 17528 166652.8125 0.011525988296184059 62 -1.663177490234375 5 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}PA{I|L} 4 5 39.302 0 0 3.6746 0 0 623.3071931730674 0 623.3071931730674 0 18.332567493688344 0 0 0 1.2134679910804405 0 0 0 + {M(Oxidation (M))|F}PA{I|L} 3.6746 + + 179 NaN NaN 182692.2 NaN 14058 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17534 73.697 NaN 400500 35 0 66074 0.261 + 33993 YLVWLQAGW 9 74 568.3008471238774 1134.5871413145546 2 568.3005981445312 MULTI HCD FTMS 0 0 0 17528 149254.1875 1 0 0 6 Unmodified _YLVWLQAGW_ REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF 36.04419817259434 0.08350412372117409 1 {I|L}YV{M(Oxidation (M))|F}H[{I|L}T]GW 9 -1 + 89.038 0 0 7.8476 7.8476 92.004 0 0 0 73.6316749521341 14.09256854528806 14.09256854528806 9.47621246364342 0 2.1989700043360187 2 0.6747425010840047 0 {I|L}YV{M(Oxidation (M))|F}H[{I|L}T]GW;{I|L}YV{M(Oxidation (M))|F}H[{I|L}A]SW;{I|L}YV{M(Oxidation (M))|F}H{[NV]|[RG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{I|L}YV{M(Oxidation (M))|F}H{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}T];[Y{I|L}]V{M(Oxidation (M))|F}H[{I|L}T]GW;[Y{I|L}]{M(Oxidation (M))|F}VH[{I|L}T]GW;{I|L}Y[QA]H{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[Y{I|L}]V{M(Oxidation (M))|F}H[VP]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YV]{I|L}{M(Oxidation (M))|F}H[{I|L}T]GW;[Y{I|L}]V{M(Oxidation (M))|F}H{[QN]|[E{I|L}]|[KN]}[KS] 7.8476;7.0124;5.5684;5.5684;5.5098;4.4531;4.3577;2.9607;2.6539;2.5401 -;-;-;-;-;-;-;-;-;- 659 + NaN NaN 146386.2 NaN 14059 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17535 73.7 NaN 130500 35 0 26541 0.263 + 3002 EAALEVVL 8 40 422.2447474600596 842.4749419869192 2 422.244873046875 MULTI HCD FTMS 0 0 0 17528 43804.04296875 0.051503905866780775 8 -0.22599029541015625 7 Unmodified _EAALEVVL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 32.116972079565 0.3321965280364247 1 PVV{I|L} 4 5 39.909 0 0 4.7371 0 0 416.18097943984736 0 416.18097943984736 0 25.929862658764264 0 0 0 1.4247425010840047 0 0 0 PVV{I|L} 4.7371 - 32 + NaN NaN 114531.1 NaN 14060 3473 17528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17537 73.705 NaN 1049500 35 0 385880 0.327 -1 0 51 413.1934236862167 824.3722944392334 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17536 395171.4375 0.29793734909328745 26 -0.7144851684570312 1 NaN NaN 1 V 1 -1 1.1092 0 0 0.13456 0 0 498.17882627692717 224.0973299615844 722.2761562385116 0 0 0 0 0 0 0 0 0 V 0.13456 - 6 + NaN NaN 237622.1 NaN 14061 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17538 73.709 NaN 248810 35 0 52522 0.261 + -1 HCHTLLVL 8 53 496.77040173474654 991.5262505362931 2 496.7703857421875 MULTI HCD FTMS 0 0 0 17536 148434.921875 0.45634315026161404 9 -0.2587432861328125 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HTLLVL_ REV__ENSG00000130766|ENST00000253063|SESN2;REV__SESN2|p.A197V|1|0.19|ENSG00000130766|chr1:28272633-28272633|C/T|missense_variant 40.44857923139169 0.22516712537107883 1 {I|L}{I|L}V{I|L} 4 -1 41.815 0 0 4.2173 0 0 535.1969471662125 0 535.1969471662125 0 36.33060513844539 0 0 0 1.2887254899964358 0 0 0 {I|L}{I|L}V{I|L} 4.2173 + + 29 NaN NaN 128950.5 NaN 14062 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17539 73.713 NaN 115000 35 0 9753.1 0.261 + 7223 FSSALDEIEEL 11 43 626.8001835895802 1251.5858142459604 2 626.8014526367188 MULTI HCD FTMS 0 0 0 17536 34743.5625 0.3852037380347522 3 -0.07852935791015625 3 Unmodified _FSSALDEIEEL_ ENSG00000179833|ENST00000313349|SERTAD2 14.405379775768559 0.3315678654765638 1 {I|L}EE{I|L} 4 7 40.745 0 0 3.2555 0 0 749.32583482754 0 749.32583482754 0 36.141303353600094 0 0 0 0.8807196863200843 0 0 0 + {I|L}EE{I|L} 3.2555 + + 29 NaN NaN 119765.1 NaN 14063 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17540 73.716 NaN 206100 35 0 16702 0.262 + 6551 FPLDKSLLL 9 61 523.31823406965 1044.6219152060999 2 523.3182983398438 MULTI HCD FTMS 0 0 0 17536 70397.5390625 0.416844459658878 -15 0.401763916015625 4 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 49.55428908609986 0.03219431099695407 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{I|L}S{I|L}{I|L} 9 2 + 56.151 0 0 5.3752 5.3752 88.973 0 0 0 22.210635766988993 45.17661380622773 22.210635766988993 14.050023300178403 0 0.9247425010840047 1.6989700043360187 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{I|L}S{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}RRP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RR{I|L}P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D[{I|L}V][KT]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RRQ[KT]{I|L} 5.3752;4.0302;3.6236;2.6034;2.5736 -;-;-;-;- 164 NaN NaN 118113.9 NaN 14064 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17541 73.72 NaN 158250 35 0 27187 0.261 + 23319 RISLPLPNF 9 57 528.8138732709568 1055.6131936087136 2 528.8138427734375 MULTI HCD FTMS 0 0 0 17536 45446.12109375 0.034912399823540975 26 -0.7144851684570312 5 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F} 1 8 18.852 0 0 1.7858 0 0 890.5341816231652 0 890.5341816231652 0 17.068782163032857 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.7858 + + 14 + NaN NaN 108729.4 NaN 14065 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17542 73.723 NaN 123050 35 0 17277 0.261 + 30102 VFVVDSAAF 9 44 477.75037451188683 953.4861960905737 2 477.7507019042969 MULTI HCD FTMS 0 0 0 17536 30134.640625 0.6435264779982185 1 -0.02611541748046875 6 Unmodified _VFVVDSAAF_ ENSG00000144867|ENST00000678299|SRPRB 34.10243960390752 0.09241788333544565 1 D{[SA]|[TG]}A{M(Oxidation (M))|F} 5 4 37.263 0 0 3.9081 0 0 444.2747835923299 0 444.2747835923299 0 17.798859261803983 0 0 0 1.805462187404089 0 0 0 + D{[SA]|[TG]}A{M(Oxidation (M))|F} 3.9081 + + 33 + NaN NaN 111941.6 NaN 14066 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17543 73.726 NaN 211590 35 0 23573 0.261 + -1 ECPALLAGAL 10 67 507.7667565100948 1013.5189600869896 2 507.7662658691406 MULTI HCD FTMS 0 0 0 17536 9688.4501953125 0.09946169432098947 9 -0.2587432861328125 7 Carbamidomethyl (C) _EC(Carbamidomethyl (C))PALLAGAL_ REV__ENSG00000148848|ENST00000448723|ADAM12;REV__nc|ENSG00000148848|O43184-2|ADAM12;REV__nc|ENSG00000148848|O43184-3|ADAM12;REV__nc|ENSG00000148848|O43184-4|ADAM12;REV__nc|ENSG00000148848|O43184|ADAM12 19.256988751693697 0.33098864134661865 1 MKA{I|L} 4 -1 36.542 0 0 3.6055 0 0 0 567.2204073541624 567.2204073541624 10.344406447039063 0 0 0 0 1 0 0 0 MKA{I|L} 3.6055 - 121 + NaN NaN 116325.6 NaN 14067 3474 17536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17545 73.731 NaN 660950 35 0 71415 0.327 + 4815 EYVRALFDF 9 87 580.292799092149 1158.571045251098 2 580.2928466796875 MULTI HCD FTMS 0 0 0 17544 290492.625 0.7439042279016783 3 -0.085296630859375 1 Unmodified _EYVRALFDF_ ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK 100.0907132914201 0.004261551473353346 1 [YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 74.862 0 0 6.4615 6.4615 91.663 0 0 0 54.251284189090825 5.509074688805811 5.509074688805811 18.953650195120844 0 2.254432191740108 0 0.8494850021680094 0 + + [YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYT{I|L}AR[EP]{M(Oxidation (M))|F};YYT{I|L}AW[KT]N;{[{M(Oxidation (M))|F}D]|MM}[{I|L}T][RV]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}[KQ]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE][{I|L}A][RV]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE]VR{[{M(Oxidation (M))|F}C]|[YS]}[VP]{M(Oxidation (M))|F};[YG][KQ]AA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.4615;4.8256;3.8264;2.9093;2.8816;2.6308;1.9789;1.8647 +;-;-;-;-;-;-;- + 1043 + NaN NaN 191262.7 NaN 14068 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17546 73.735 NaN 730960 35 0 83836 0.261 + 18371 MPMNVADLI 9 89 510.2482387751982 1018.4819246171965 2 510.248779296875 MULTI HCD FTMS 0 0 0 17544 236575.1875 0.7853113369431513 5 -0.140899658203125 2 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 47.748688679222035 0.03472022231463587 1 {[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PAD{I|L}{I|L} 9 5 + 65.746 0 0 6.4553 6.4553 89.848 0 0 0 8.31830694200113 21.93340810813814 8.31830694200113 10.39111407821514 0 1.5 0 0.2742275032520141 0.5941876774005248 {[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PAD{I|L}{I|L};{I|L}E[WC(Carbamidomethyl (C))]AD{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PW{I|L}{I|L};{[TV]|[{I|L}S]}[C(Carbamidomethyl (C))M]PAD{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QS]|[NT]}PW{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}[DN]D{I|L}{I|L};{I|L}[{M(Oxidation (M))|F}V]APYY{M(Oxidation (M))|F};{I|L}[{M(Oxidation (M))|F}V]AP{M(Oxidation (M))|F}YY;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}[DV]{I|L};{M(Oxidation (M))|F}[{I|L}V]APYY{M(Oxidation (M))|F} 6.4553;5.435;5.0448;4.577;4.3649;3.7152;3.6191;3.5715;3.0892;2.8922 -;-;-;-;-;-;-;-;-;- 717 NaN NaN 193035.2 NaN 14069 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17547 73.739 NaN 201590 35 0 47377 0.261 + -1 NYLKGHPMTAQ 11 48 638.3117120173835 1274.6088711015668 2 638.3110961914062 MULTI HCD FTMS 0 0 0 17544 80822.8828125 0.37987824160413164 5 -0.140899658203125 3 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 15.248480904072842 0.3242218977034194 1 [YN]{I|L} 3 -1 40.942 0 0 3.2121 0 0 0 881.3959303510876 881.3959303510876 19.973024840566467 0 0 0 0 1 1.6989700043360187 0 0.3494850021680094 [YN]{I|L} 3.2121 + + 21 NaN NaN 106151.3 NaN 14070 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17548 73.742 NaN 173680 35 0 17766 0.264 -1 LSSGQCGG 8 51 404.16961921983085 806.3246855064617 2 404.1700439453125 MULTI HCD FTMS 0 0 0 17544 101289.2109375 0.009831806840570025 64 -1.708831787109375 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LSSGQC(Carbamidomethyl (C))GG_ ENST00000476870.5_1_7:100468185-100470922:+|nuORF 4.75600775471527 0.5349361699807423 1 {I|L}[EP] 3 -1 1.7956 0 0 0.22269 0 0 449.15144545722814 0 449.15144545722814 0 1.7956061064919067 0 0 0 0 0 0 0 {I|L}[EP] 0.22269 - 2 NaN NaN 100567.3 NaN 14071 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17549 73.746 NaN 247370 35 0 25610 0.261 + 16801 LYDVRTILL 9 73 553.3345467548892 1104.6545405765783 2 553.3343505859375 MULTI HCD FTMS 0 0 0 17544 67118.203125 0.7585221200191451 -1 0.02611541748046875 5 Unmodified _LYDVRTILL_ chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C 38.175570920033316 0.07371992880350783 1 T{I|L}{I|L} 3 6 30.93 0 0 2.8 0 0 759.4296742169937 0 759.4296742169937 0 -3.819459175083608 -3.819459175083608 0 0 0.5 0 0.2742275032520141 0 + T{I|L}{I|L} 2.8 + + 46 NaN NaN 123869.6 NaN 14072 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17550 73.749 NaN 136150 35 0 18076 0.261 + -1 SSWALCWLIF 10 48 641.8181503883618 1281.6217478435235 2 641.818115234375 MULTI HCD FTMS 0 0 0 17544 35622.25 0.666628849128491 1 -0.0295257568359375 6 Carbamidomethyl (C) _SSWALC(Carbamidomethyl (C))WLIF_ REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF 6.2057823575117 0.44245551207394906 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.9675 0 0 1003.45929725753 0 1003.45929725753 0 22.11758134947864 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9675 + + 15 NaN NaN 113877.2 NaN 14073 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17551 73.752 NaN 231490 35 0 23717 0.263 + 729 AQVYLVVIF 9 59 526.312820766001 1050.6110885988019 2 526.3121337890625 MULTI HCD FTMS 0 0 0 17544 35467.1015625 0.707591295599092 1 -0.0295257568359375 7 Unmodified _AQVYLVVIF_ REV__ENST00000509581.5_1_5:276369-276570:+|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}RRV{I|L}{M(Oxidation (M))|F} 6 -1 33.109 0 0 3.1514 0 0 248.07921034980626 0 248.07921034980626 0 27.53591878376909 0 0 0 1.8494850021680094 0 0 0 {I|L}RRV{I|L}{M(Oxidation (M))|F} 3.1514 - 42 NaN NaN 131546.3 NaN 14074 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17552 73.756 NaN 201650 35 0 49826 0.261 + 32972 YAPIQNKIL 9 54 530.3136877811668 1058.6128226291335 2 530.3140869140625 MULTI HCD FTMS 0 0 0 17544 13011.259765625 0.011940468409804736 -9 0.2616424560546875 8 Unmodified _YAPIQNKIL_ REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1 16.942295170755138 0.21397866736869717 1 KC{I|L}{I|L} 4 -1 35.433 0 0 3.3471 0 0 583.3344593732437 0 583.3344593732437 0 9.350781693192971 0 0 0 0.3494850021680094 0 0 0 KC{I|L}{I|L} 3.3471 - 40 NaN NaN 109956.9 NaN 14075 3475 17544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17554 73.761 NaN 10553000 35 0 2135500 0.327 + 1190 AYLKAIVLF 9 84 519.3233459979147 1036.6321390626292 2 519.32373046875 MULTI HCD FTMS 0 0 0 17553 7160184 0.9082720207334399 1 -0.02288818359375 1 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 92.8221339359638 0.0044520161739443126 1 AY{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 107.97 0 0 10.416 10.416 96.415 0 0 0 57.95371572735597 16.478174818886373 16.478174818886373 15.371381606472596 0 3.142159058960253 1.6989700043360187 0 0 + + AY{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}AV{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};[{I|L}A]YKA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}AV{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}A{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}VA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}{M(Oxidation (M))|F}V 10.416;8.933;8.1603;8.1055;7.9904;7.3982;7.3328;7.1629;6.9489;6.8338 +;+;-;-;-;-;-;-;-;- + 1210 + NaN NaN 557100.1 NaN 14076 3476 17553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17555 73.765 NaN 2003600 35 0 354870 0.261 + 24216 RYFLPPYTF 9 78 602.3135920149654 1202.6126310967306 2 602.313720703125 MULTI HCD FTMS 0 0 0 17553 798206.25 0.07496118380268853 28 -0.760284423828125 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 71.92227651296345 0.008466197542043549 1 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 10 7 71.904 0 0 5.979 0 0 0 60.99256063911722 60.99256063911722 45.098272236268144 0 0 0 0 2 1.6989700043360187 1.5044321917401078 0 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 5.979 - 747 NaN NaN 387868.8 NaN 14077 3476 17553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17556 73.769 NaN 176790 35 0 20231 0.262 + 1031 AYGGAFYAF 9 46 483.72153490602915 965.4285168788583 2 483.72149658203125 MULTI HCD FTMS 0 0 0 17553 102312.953125 1 0 0 3 Unmodified _AYGGAFYAF_ ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59945878-59946064:-|nuORF 45.7499826716795 0.03894913563566938 1 {M(Oxidation (M))|F}YA{M(Oxidation (M))|F} 4 5 49.68 0 0 5.146 0 0 419.18074468557444 0 419.18074468557444 0 46.18562527100117 0 0 0 1.9247425010840047 0 0 0 + {M(Oxidation (M))|F}YA{M(Oxidation (M))|F} 5.146 + + 79 + NaN NaN 108999.1 NaN 14078 3476 17553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17557 73.772 NaN 90168 35 0 12857 0.261 + 7224 FSSALDEIEEL 11 45 626.8001835895802 1251.5858142459604 2 627.3024291992188 MULTI HCD FTMS 0 0 0 17553 21283.095703125 0.23408308610236742 6 -0.17700958251953125 4 Unmodified _FSSALDEIEEL_ ENSG00000179833|ENST00000313349|SERTAD2 7.608950283845883 0.38555039536024605 1 {I|L}EE{I|L} 4 7 35.745 0 0 2.856 0 0 749.3273182599625 0 749.3273182599625 0 10.708253071758875 0 0 0 0.3807196863200844 0 0 0 + {I|L}EE{I|L} 2.856 + + 17 NaN NaN 111908 NaN 14079 3476 17553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17558 73.775 NaN 58774 35 0 11280 0.264 + 23112 REWPSSGS 8 37 453.2095748778992 NaN 0 452.8698425292969 PEAK HCD FTMS 0 0 0 17553 18417.77734375 0.6401444528462863 8 -0.23250579833984375 5 Unmodified _REWPSSGS_ ENST00000374279.3_1_9:114659094-114659565:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97296.5 NaN 14080 3476 17553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17559 73.779 NaN 78831 35 0 9591.3 0.261 + 29739 VDQELGERHF 10 50 410.5362470393989 1228.5869117183968 3 410.87139892578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VDQELGERHF_ REV__ENST00000426678.1_1_3:48720334-48723728:-|nuORF 1.4819007175156935 0.4674597685733628 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2604 0 0 1063.507853956481 0 1063.507853956481 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2604 + + 2 + NaN NaN 89329.9 NaN 14081 3476 17553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17561 73.783 NaN 3113000 35 0 180540 0.327 + 32169 VYSQFITQL 9 137 549.795499584766 1097.576446236332 2 549.8135375976562 MULTI HCD FTMS 0 0 0 17560 141443.765625 0.10549036724031058 7 -0.20961761474609375 1 Unmodified _VYSQFITQL_ ENSG00000113522|ENST00000378823|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 40.23920728925047 0.06424668180817725 1 MKT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}] 9 7 + 58.21 0 0 5.3035 5.3035 88.603 0 0 0 9.714753348455424 10.782184059010262 9.714753348455424 13.05462187404089 0 0.5 0 1.1307196863200843 1.2059771852360797 MKT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}];MG{[HG]|PP}D{I|L}VE[K{I|L}];MGVE{[HG]|PP}VE[K{I|L}];MRE[RH]E[K{I|L}];[KT]M{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}];MGVEV{[HG]|PP}E[K{I|L}];MKT{[{M(Oxidation (M))|F}C]|[YS]}V{[VA]|[{I|L}G]}{[TV]|[{I|L}S]};MKT{[{M(Oxidation (M))|F}C]|[YS]}V[SG]{I|L}{I|L};MKT{[{M(Oxidation (M))|F}C]|[YS]}V{[SA]|[TG]}[{I|L}V];M{[DA]|[EG]}V{[HG]|PP}VE[K{I|L}] 5.3035;4.1141;3.0053;2.6673;2.6178;2.5602;2.4611;2.4575;2.3436;2.3239 -;-;-;-;-;-;-;-;-;- 9381 + NaN NaN 550599.5 NaN 14082 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17562 73.788 NaN 879480 35 0 99968 0.261 + 19914 NYFLWTEKF 9 88 624.3087289434097 1246.6029049536194 2 624.30859375 MULTI HCD FTMS 0 0 0 17560 520578.90625 0.6546878187022278 2 -0.06229400634765625 2 Unmodified _NYFLWTEKF_ ENSG00000100351|ENST00000344138|GRAP2 159.1008501968603 9.756703400391535E-09 1 [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 9 0 + 121.6 0 0 9.7542 9.7542 95.761 0 0 0 14.337419144018853 14.337419144018853 14.337419144018853 14.337419144018853 0 2.6549471895720984 2 1.1549471895720984 1.666386562212267 + + [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};NY{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};NY{M(Oxidation (M))|F}{I|L}WT{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]{M(Oxidation (M))|F}{I|L}[PG]{I|L}[YN]{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}[PG]{I|L}{[TV]|[{I|L}S]}[HS];NQ{[CP]|[EA]}{I|L}[PG]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};RR[NP]{[DA]|[EG]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};N[W{I|L}][Y{M(Oxidation (M))|F}]TEK{M(Oxidation (M))|F};RR{[QD]|[EN]|[WG]|[KD]|[RS]}[PG]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};RR[DP]{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.7542;8.604;7.2995;5.3561;4.0992;3.516;3.2779;2.1497;2.0711;1.8296 +;+;-;-;-;-;-;-;-;- + 1528 NaN NaN 233956.6 NaN 14083 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17563 73.792 NaN 512710 35 0 59941 0.261 + 35727 YYLNEIQSF 9 72 588.7822778758658 1175.5500028185315 2 588.7822265625 MULTI HCD FTMS 0 0 0 17560 278525.53125 0.1751457101527173 7 -0.20961761474609375 3 Unmodified _YYLNEIQSF_ ENSG00000160284|ENST00000291672|SPATC1L;nc|ENSG00000160284|Q9H0A9-2|SPATC1L 110.5527297667825 0.0028521687250969148 1 YY{I|L}NE{I|L}QS{M(Oxidation (M))|F} 9 0 + 107.64 0 0 9.1568 9.1568 93.131 0 0 0 22.632192780232785 93.28508689054182 22.632192780232785 9.208187539523749 0 2.805462187404089 1.6989700043360187 0 1.0994850021680094 + + YY{I|L}NE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NEA{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}NEA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};YY{I|L}GGEA{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};YY{I|L}GGEA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 9.1568;8.3735;7.7995;6.8392;6.6586;5.4968;5.4216;4.4368 +;-;-;-;-;-;-;- + 704 NaN NaN 160620 NaN 14084 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17564 73.795 NaN 212300 35 0 23833 0.264 -1 0 63 435.250960108541 868.487367283882 2 435.2508850097656 MULTI HCD FTMS 0 0 0 17560 148688 0.35803964098030594 -6 0.167083740234375 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.4069 0 0 703.4081416752867 0 703.4081416752867 0 0.7648373010427179 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4069 - 8 + NaN NaN 119253.9 NaN 14085 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17565 73.798 NaN 274740 35 0 94482 0.261 + 20872 PILAEEAVL 9 49 477.7790842103957 953.5436154875914 2 477.7792663574219 MULTI HCD FTMS 0 0 0 17560 124181.8984375 0.10491846221566316 -6 0.167083740234375 5 Unmodified _PILAEEAVL_ ENSG00000115109|ENST00000263713|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5 23.1484247019978 0.1603590852062899 1 P[QT]V{I|L} 5 6 26.753 0 0 2.8056 0 0 397.22661025215 0 397.22661025215 0 8.169015600442577 0 0 0 0.5 0 0.3807196863200844 0.3252574989159953 P[QT]V{I|L} 2.8056 - 35 NaN NaN 115834.4 NaN 14086 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17566 73.802 NaN 212030 35 0 33642 0.261 -1 TYIYIQKCF 9 59 618.3084835727648 NaN 0 618.3224487304688 PEAK HCD FTMS 0 0 0 17560 10222.03125 0.5185545690680824 -1 0.02288818359375 6 Carbamidomethyl (C) _TYIYIQKC(Carbamidomethyl (C))F_ ENST00000383746.7_2_3:44396236-44396287:+|nuORF 9.38312468134398 0.24977752951804 1 C(Carbamidomethyl (C)) 1 -1 7.3464 0 0 0.59504 0 0 579.316599858617 492.2308748834594 1071.5474747420765 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 0.59504 + + 12 + NaN NaN 111331.6 NaN 14087 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17567 73.805 NaN 101900 35 0 13116 0.262 -1 TVCSLEELL 9 39 532.2688303100548 1062.5231076869095 2 532.2692260742188 MULTI HCD FTMS 0 0 0 17560 32147.365234375 0.4773709071765104 1 -0.0328826904296875 7 Carbamidomethyl (C) _TVC(Carbamidomethyl (C))SLEELL_ ENSG00000198765|ENST00000369522|SYCP1 13.90604991867851 0.24021115267848145 1 EE{I|L}{I|L} 4 -1 39.24 0 0 3.6931 0 0 560.25883681465 0 560.25883681465 0 38.13100339696028 0 0 0 0.8807196863200843 0 0 0 EE{I|L}{I|L} 3.6931 + + 8 NaN NaN 91180.4 NaN 14088 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17568 73.808 NaN 143540 35 0 8694.3 0.261 -1 0 59 607.2923156687556 606.2850392021555 1 607.2927856445312 MULTI HCD FTMS 0 0 0 17560 31538.638671875 0.6958254394062255 -1 0.02288818359375 8 NaN NaN 1 Y 1 -1 5.4846 0 0 0.90462 0 0 110.03123778789616 330.16730676822505 440.1985445561212 0 0 0 0 0 0 0 0 0 Y 0.90462 - 5 + NaN NaN 98129.7 NaN 14089 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17569 73.811 NaN 372040 35 0 32484 0.261 + 13253 KYMDIEFDF 9 57 604.2705237789751 1206.52649462475 2 604.771240234375 MULTI HCD FTMS 0 0 0 17560 8752.365234375 0.00467036730216301 -6 0.167083740234375 9 Unmodified _KYMDIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 59.368380827593164 0.01846506874148156 1 D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 57.172 0 0 4.7386 0 0 422.1983190817134 0 422.1983190817134 0 39.262137858390815 0 0 0 1.8807196863200843 0 0.3494850021680094 0 + D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7386 + + 263 NaN NaN 139605.4 NaN 14090 3477 17560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17571 73.816 NaN 1513700 35 0 202370 0.326 + 1201 AYLKFLDQF 9 110 572.8059954988838 1143.5974380645675 2 572.8060913085938 MULTI HCD FTMS 0 0 0 17570 733424.375 0.702723231499619 2 -0.05560302734375 1 Unmodified _AYLKFLDQF_ ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2 185.05004568166646 7.3094861853412E-13 1 {M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F} 9 2 + 130.31 0 0 11.394 11.394 97.198 0 0 0 85.78365752348603 14.973024840566453 14.973024840566453 18.900925144087765 0 3.3494850021680094 0 2.135151878060192 1.7658715643802765 {M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}NE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EN;[{M(Oxidation (M))|F}V]TK{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}[PA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}GGE;{M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]EQ 11.394;9.7417;9.6452;8.9365;7.4579;7.4379;6.7659;6.6715;6.6527;6.0718 -;+;-;-;-;-;-;-;-;- + 2904 + NaN NaN 312862.7 NaN 14091 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17572 73.821 NaN 1438200 35 0 411640 0.261 + 18691 MYPYIFHVL 9 81 599.8019811851997 1197.5894094371993 2 599.8020629882812 MULTI HCD FTMS 0 0 0 17570 727077.4375 0.8431158393301944 -5 0.13759613037109375 2 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.906 0 0 6.5887 6.5887 87.345 0 0 0 5.6424927368725974 51.79297219607513 5.6424927368725974 7.112496903393861 0 2.7302046884880937 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}HY{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[RV]V{M(Oxidation (M))|F}Y{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[RV][Y{M(Oxidation (M))|F}]V{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}[RK]E;{[QN]|[E{I|L}]|[KN]}[CG][RV]V{M(Oxidation (M))|F}Y{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}Y{I|L} 6.5887;5.9948;2.0423;1.3069;1.226;1.2158;0.77694;0.6619;0.44691;0.4042 +;+;-;-;-;-;-;-;-;- + 811 NaN NaN 295819.7 NaN 14092 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17573 73.824 NaN 1507700 35 0 117690 0.261 + 11634 IYVHDLLTF 9 117 560.8058039694926 1119.597055005785 2 561.3214111328125 MULTI HCD FTMS 0 0 0 17570 174633.4375 0.03620445119606264 19 -0.50811767578125 3 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 85.35673624503755 0.00464763827098139 1 [Y{I|L}]{I|L}VHD{I|L}T{M(Oxidation (M))|F} 9 2 + 66.898 0 0 5.9752 5.9752 84.779 0 0 0 14.912750560994489 13.08881899669241 13.08881899669241 3.690104404489361 0 1.676935982160881 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]{I|L}VHD{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VESH{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VE[HV]T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHDT{I|L}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}HD{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VTDH{I|L}{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}ESH{I|L}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}E[HV]T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}HDT{I|L}{M(Oxidation (M))|F} 5.9752;5.6456;5.5219;5.2546;5.2203;5.1596;5.1191;4.8908;4.7671;4.4998 -;-;-;-;-;-;+;-;-;- + 4577 NaN NaN 314781.8 NaN 14093 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17574 73.828 NaN 334470 35 0 24106 0.261 + 5766 FPAHILDCL 9 75 514.7650308414508 1027.5155087497014 2 514.765869140625 MULTI HCD FTMS 0 0 0 17570 165765.28125 0.13193468760527188 13 -0.34522247314453125 4 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 97.07464715276575 0.004340583992084827 1 {I|L}MHA{I|L}{I|L}D 7 6 72.204 0 0 7.027 0 0 0 231.08091150455314 231.08091150455314 26.04957331251761 0 0 0 0 1.8252574989159953 1.3979400086720375 1.6307196863200843 0 {I|L}MHA{I|L}{I|L}D 7.027 - 500 + NaN NaN 154873.2 NaN 14094 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17575 73.831 NaN 910580 35 0 112220 0.261 + 28924 TWTEVSYTF 9 91 567.2613992812029 1132.5082456292057 2 567.2606811523438 MULTI HCD FTMS 0 0 0 17570 395459.375 0.5477622332642009 -6 0.170379638671875 5 Unmodified _TWTEVSYTF_ ENSG00000116663|ENST00000376753|FBXO6 100.37149154755038 0.004254194004462789 1 [YE][QP]VSYT{M(Oxidation (M))|F} 9 4 + 77.202 0 0 6.8169 6.8169 85.601 0 0 0 42.27986387747039 16.478174818886373 16.478174818886373 2.2184874961635614 0 1.9247425010840047 1.3979400086720375 0.6861818737241735 0 [YE][QP]VSYT{M(Oxidation (M))|F};[YE]V[QP]SYT{M(Oxidation (M))|F};[YE]V{[QS]|[NT]}PYT{M(Oxidation (M))|F};[YE]V{[QS]|[NT]}YPT{M(Oxidation (M))|F};[PS]T{[CA]|SS}{M(Oxidation (M))|F}PYT{M(Oxidation (M))|F};{[RE]|[WV]}[SG]HHYT{M(Oxidation (M))|F};[PS]T{[CA]|SS}{M(Oxidation (M))|F}YPT{M(Oxidation (M))|F};{[RE]|[WV]}{[CA]|SS}G[HK]DA{M(Oxidation (M))|F};[YT]{[HG]|PP}{M(Oxidation (M))|F}P[HQ]{M(Oxidation (M))|F};[YT]VY{[QS]|[NT]}[EP]{M(Oxidation (M))|F} 6.8169;6.621;5.007;4.2997;3.0608;2.8495;2.3535;2.082;2.0809;2.0809 -;-;-;-;-;-;-;-;-;- 2256 + NaN NaN 231471.8 NaN 14095 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17576 73.834 NaN 586510 35 0 52024 0.261 + 11976 KFRYNELMQ 9 102 614.8084561785107 NaN 0 614.7928466796875 PEAK HCD FTMS 0 0 0 17570 19504.423828125 0.7934309064838652 -1 0.0328826904296875 6 Unmodified _KFRYNELMQ_ ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 24.020572477871973 0.16041128140741606 1 {M(Oxidation (M))|F}AWVYY 6 8 29.931 0 0 2.4382 0 0 130.10829311698382 265.1308687799438 395.2391618969276 0 0 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}AWVYY 2.4382 - 1176 + NaN NaN 179175.1 NaN 14096 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17577 73.838 NaN 336440 35 0 42022 0.261 + 7539 FYAELYHII 9 76 584.8053094325448 1167.5960659318896 2 584.8059692382812 MULTI HCD FTMS 0 0 0 17570 100717.796875 0.06184926682498284 16 -0.430328369140625 7 Unmodified _FYAELYHII_ ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF 109.62928328672726 0.0030029239606406397 1 [Y{M(Oxidation (M))|F}]AE{I|L}YH{I|L}{I|L} 9 0 + 70.351 0 0 6.0253 6.0253 86.932 0 0 0 5.6424927368725974 43.262495684687735 5.6424927368725974 8.679067360440612 0 2.805462187404089 0 0.8754223615525999 0 + + [Y{M(Oxidation (M))|F}]AE{I|L}YH{I|L}{I|L};[Y{I|L}]AE{M(Oxidation (M))|F}YH{I|L}{I|L};[Y{M(Oxidation (M))|F}]AE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}E{[{M(Oxidation (M))|F}C]|[YS]}{I|L};[Y{M(Oxidation (M))|F}]AE{I|L}{I|L}{I|L}NW;[Y{I|L}]AE{M(Oxidation (M))|F}{I|L}{I|L}NW;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L}{I|L} 6.0253;5.282;4.3792;2.969;2.8594;2.116;0.62348 +;-;-;-;-;-;- + 601 NaN NaN 142117.6 NaN 14097 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17578 73.841 NaN 397910 35 0 23566 0.261 + 19547 NSMGLEQSGR 10 94 539.753262764543 1077.491972595886 2 539.7658081054688 MULTI HCD FTMS 0 0 0 17570 62537.25 0.8493857929768773 -1 0.0328826904296875 8 Unmodified _NSMGLEQSGR_ REV__ENSG00000066777|ENST00000262215|ARFGEF1 17.11289562659939 0.35104376501799556 1 {[CT]|[{M(Oxidation (M))|F}G]}E{[QN]|[E{I|L}]|[KN]}AVEAN 10 -1 + 43.294 0 0 4.018 4.018 82.657 0 0 0 1.9402936798743298 20.69644305573966 1.9402936798743298 6.059837384595923 0 0 0 0.6861818737241735 0.5796896906561032 {[CT]|[{M(Oxidation (M))|F}G]}E{[QN]|[E{I|L}]|[KN]}AVEAN;N{[MS]|[{M(Oxidation (M))|F}A]}VA{[QN]|[E{I|L}]|[KN]}PA{M(Oxidation (M))|F};N{[MS]|[{M(Oxidation (M))|F}A]}VA{[QN]|[E{I|L}]|[KN]}EW;{[CT]|[{M(Oxidation (M))|F}G]}EV[DV]VEAN;{[CT]|[{M(Oxidation (M))|F}G]}EVA{[QN]|[E{I|L}]|[KN]}EAN;{[YD]|[{M(Oxidation (M))|F}M]}VP[RN]PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}[EP]EAN;{[CT]|[{M(Oxidation (M))|F}G]}E[RN]AAEAN;{[{M(Oxidation (M))|F}C]|[YS]}RP{[QN]|[E{I|L}]|[KN]}EAN;{[YD]|[{M(Oxidation (M))|F}M]}K{I|L}[QP]PA{M(Oxidation (M))|F} 4.018;3.4556;3.317;3.3166;3.2047;3.0915;3.0702;3.0248;3.0164;2.9756 -;-;-;-;-;-;-;-;-;- 2726 NaN NaN 141239.7 NaN 14098 3478 17570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17580 73.846 NaN 3764100 35 0 381260 0.327 -1 YSLFMTLML 9 120 575.7790029674118 1149.5434530016234 2 575.7926635742188 MULTI HCD FTMS 0 0 0 17579 553189.125 0.6127284459331904 7 -0.1959381103515625 1 2 Oxidation (M) _YSLFM(Oxidation (M))TLM(Oxidation (M))L_ tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1 26.88365393820708 0.12808753336095696 1 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 -1 56.03 0 0 4.8741 0 0 0 128.0442589350454 128.0442589350454 8.647248293991971 0 0 0 0 0.3494850021680094 1.0969100130080565 1.5471062485323517 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.8741 - 12201 NaN NaN 485931.5 NaN 14099 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17581 73.85 NaN 998410 35 0 370440 0.264 -1 0 55 413.1934236862167 824.3722944392334 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17579 537891.375 0.40554026723564346 31 -0.8313217163085938 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 0.9691 0 0 0.11756 0 0 232.15734190192717 442.1665133111938 674.323855213121 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.11756 - 3 + NaN NaN 237016.5 NaN 14100 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17582 73.854 NaN 3319400 35 0 428290 0.261 + 35580 YYIFIPSKF 9 85 589.318302735094 1176.622052536988 2 589.3184814453125 MULTI HCD FTMS 0 0 0 17579 1430008.125 0.041288392790013506 -5 0.1408233642578125 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 114.6490535036381 0.0021834323520089267 1 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 91.103 0 0 7.7428 7.7428 88.625 0 0 0 15.814768439857247 15.814768439857247 15.814768439857247 5.300084529637985 0 2.2302046884880937 1.6989700043360187 1.1936726795685342 0.2742275032520141 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}PKS{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V{I|L}{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F} 7.7428;7.2923;6.3987;5.2663;5.1959;4.9643;4.6945;4.3758;4.0239;3.9324 +;-;-;-;-;-;-;-;-;- + 3011 + NaN NaN 582064.8 NaN 14101 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17583 73.857 NaN 1497400 35 0 108120 0.261 + 17018 LYIVEPLKF 9 103 561.3339814742221 1120.6534100152442 2 561.3341064453125 MULTI HCD FTMS 0 0 0 17579 419781.9375 0.9887724858331136 2 -0.05898284912109375 4 Unmodified _LYIVEPLKF_ ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO 63.960520009940105 0.0120409805053046 1 {I|L}Y{I|L}VE[{I|L}P]K{M(Oxidation (M))|F} 9 0 + 97.392 0 0 8.6907 8.6907 91.408 0 0 0 54.995864243062336 16.478174818886373 16.478174818886373 8.494850021680094 0 2.4802046884880937 1.6989700043360187 0.805462187404089 0.8494850021680094 + + {I|L}Y{I|L}VE[{I|L}P]K{M(Oxidation (M))|F};{I|L}Y{I|L}VEK[{I|L}P]{M(Oxidation (M))|F};{I|L}Y{I|L}VP{[QN]|[E{I|L}]|[KN]}K{M(Oxidation (M))|F};{I|L}Y{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VE[{I|L}P]K{M(Oxidation (M))|F};{I|L}Y{I|L}VTGV[{I|L}P]{M(Oxidation (M))|F};{I|L}Y{I|L}V[SG]{I|L}[{I|L}P]{M(Oxidation (M))|F};{I|L}Y{I|L}VTG{I|L}[VP]{M(Oxidation (M))|F};{I|L}Y{I|L}AA[{I|L}P]{I|L}T{M(Oxidation (M))|F};{I|L}Y{I|L}AAT{I|L}[{I|L}P]{M(Oxidation (M))|F} 8.6907;7.9327;7.5576;7.174;5.8345;5.6774;5.6546;5.566;5.3069;5.1567 +;-;-;-;+;-;-;-;-;- + 5023 + NaN NaN 309369.2 NaN 14102 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17584 73.86 NaN 164650 35 0 13962 0.261 -1 MPDIDFNL 8 53 490.7234369639857 979.4323209947714 2 490.7231750488281 MULTI HCD FTMS 0 0 0 17579 69459.21875 0.5675561046060319 19 -0.5149002075195312 5 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 15.847184025352803 0.47719562709667024 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]D{M(Oxidation (M))|F}N 7 -1 39.481 0 0 4.031 0 0 0 128.07651371990474 128.07651371990474 23.996294548824366 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]D{M(Oxidation (M))|F}N 4.031 - 85 NaN NaN 111205.3 NaN 14103 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17585 73.864 NaN 119050 35 0 15270 0.261 + -1 MTLHSVSFL 9 48 525.7681222265545 1049.521691519909 2 525.7681274414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))TLHSVSFL_ REV__ENST00000376414.4_1_13:99947594-99947642:-|nuORF 4.3292370932331545 0.3181982124262546 1 V{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.7111 0 0 785.3747321466652 0 785.3747321466652 0 4.146518864155125 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.7111 - 26 + NaN NaN 94331.7 NaN 14104 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17586 73.867 NaN 84450 35 0 8686.3 0.261 + 3416 EFDKIFSI 8 57 499.7649043651337 NaN 0 499.7640686035156 PEAK HCD FTMS 0 0 0 17579 8858.0302734375 0.29179717018005574 -2 0.06229400634765625 7 Unmodified _EFDKIFSI_ tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1 7.910154910731844 0.38822285293237185 1 A 1 8 6.9897 0 0 0.70071 0 0 131.09475089254164 792.3581637018186 923.4529145943602 0 0 0 0 0 0 0 0 0 A 0.70071 - 4 + NaN NaN 110146.4 NaN 14105 3479 17579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17588 73.872 NaN 914560 35 0 100750 0.327 + 13254 KYMDIEFDF 9 76 604.2705237789751 1206.52649462475 2 604.2706298828125 MULTI HCD FTMS 0 0 0 17587 474877.0625 0.17365344882753578 -3 0.0884857177734375 1 Unmodified _KYMDIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 100.0907132914201 0.004261551473353346 1 [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 76.054 0 0 6.3035 6.3035 92.293 0 0 0 6.174727504281179 50.63055110109673 6.174727504281179 28.92236356157298 0 2.6861818737241734 0 0.5796896906561032 0.3252574989159953 + + [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};[C(Carbamidomethyl (C))C][RH]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 6.3035;3.9064;3.0542;2.4347;2.2486;1.9336;1.8553;1.6715;1.5826;1.5435 +;-;-;-;-;-;-;-;-;- + 744 NaN NaN 232415.3 NaN 14106 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17589 73.876 NaN 272170 35 0 30283 0.261 + 29533 TYVYMCHVGV 10 74 586.2676777977645 1170.5208026623288 2 586.2677612304688 MULTI HCD FTMS 0 0 0 17587 88082.953125 0.06685720974626726 20 -0.5474700927734375 2 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 15.847184025352803 0.36288280428275715 1 [YT]VY{M(Oxidation (M))|F}T 6 5 57.396 0 0 4.9034 0 0 0 393.13935266666255 393.13935266666255 52.791681396006 0 0 0 0 1.3494850021680094 2 0 0 [YT]VY{M(Oxidation (M))|F}T 4.9034 - 96 + NaN NaN 122822.3 NaN 14107 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17590 73.88 NaN 285180 35 0 29424 0.261 + 6552 FPLDKSLLL 9 67 523.31823406965 1044.6219152060999 2 523.3179321289062 MULTI HCD FTMS 0 0 0 17587 118763.6796875 0.703234552595423 -9 0.2555694580078125 3 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 53.40400417844725 0.026808823219830042 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{I|L}S{I|L}{I|L} 9 2 + 58.879 0 0 5.6364 5.6364 83.032 0 0 0 19.053126974749986 39.16895006820745 19.053126974749986 1.249387366082999 0 1.5994850021680094 1.6989700043360187 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{I|L}S{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DKS{I|L}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}RRP{M(Oxidation (M))|F}{I|L} 5.6364;5.5168;4.9632 -;+;- + 156 NaN NaN 130183.2 NaN 14108 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17591 73.883 NaN 158480 35 0 24730 0.261 + 17965 MIWCDIVL 8 54 496.7526837448036 NaN 0 496.77020263671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MIWCDIVL_ REV__ENST00000480770.5_3_19:12241465-12247683:-|nuORF 10.183394434864962 0.38822285293237185 1 V{I|L} 2 -1 10.969 0 0 1.1063 0 0 131.057895918999 645.2591646783811 776.3170605973801 0 0 0 0 0 0 0 0 0 V{I|L} 1.1063 + + 13 + NaN NaN 115647.9 NaN 14109 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17592 73.887 NaN 349060 35 0 30839 0.261 + 4816 EYVRALFDF 9 86 580.292799092149 1158.571045251098 2 580.2921752929688 MULTI HCD FTMS 0 0 0 17587 95276.359375 0.24398721502186915 8 -0.21175384521484375 5 Unmodified _EYVRALFDF_ ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK 69.10491478415734 0.009377850133389008 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 6 43.962 0 0 3.7945 0 0 731.3964674696512 0 731.3964674696512 0 22.992997296092277 0 0 0 1.0629529932484498 0 0.7134679910804405 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7945 + + 273 + NaN NaN 130009.7 NaN 14110 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17593 73.89 NaN 518910 35 0 120850 0.262 + 9656 HVERELEEHKR 11 55 487.9238326897571 1460.7496686694712 3 488.2578125 MULTI HCD FTMS 0 0 0 17587 90329.0625 0.6483791474637322 -1 0.02619171142578125 6 Unmodified _HVERELEEHKR_ REV__ENSG00000137877|ENST00000320955|SPTBN5 2.4347853303010236 0.4082425251555256 1 [{I|L}P]{I|L}[RV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PW{M(Oxidation (M))|F}{[CP]|[EA]} 12 -1 + 40.785 0 0 2.7921 2.7921 88.28 0 0 0 8.121827291357846 18.109112683611528 8.121827291357846 40.78517508538184 0 0.9247425010840047 1.3979400086720375 0.4247425010840047 0 [{I|L}P]{I|L}[RV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PW{M(Oxidation (M))|F}{[CP]|[EA]} 2.7921 - 57 NaN NaN 155619.4 NaN 14111 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17594 73.893 NaN 283850 35 0 42644 0.261 + 14508 LFCLYVDF 8 75 510.2482387751982 1018.4819246171965 2 510.2485046386719 MULTI HCD FTMS 0 0 0 17587 80631.9921875 0.26765789876064394 10 -0.25716400146484375 7 Unmodified _LFCLYVDF_ REV__ENSG00000088387|ENST00000682017|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-4|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9;REV__nc|ENSG00000088387|Q9BZ29|DOCK9 26.34127834903884 0.3999841173197873 1 {M(Oxidation (M))|F}PAD{I|L}{I|L} 6 -1 53.008 0 0 5.2046 0 0 344.13188368965 0 344.13188368965 0 13.96713777483761 0 0 0 1.1861818737241734 0 0 0 {M(Oxidation (M))|F}PAD{I|L}{I|L} 5.2046 - 403 NaN NaN 120882 NaN 14112 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17595 73.897 NaN 74066 35 0 9549.6 0.261 + -1 IDPMLDNL 8 40 473.7313118513415 945.448070769483 2 473.7307434082031 MULTI HCD FTMS 0 0 0 17587 34912.66015625 0.1853058731259367 32 -0.8609542846679688 8 Oxidation (M) _IDPM(Oxidation (M))LDNL_ REV__ENSG00000011114|ENST00000334746|BTBD7;REV__nc|ENSG00000011114|Q9P203-5|BTBD7 7.289230182591677 0.5311777711368266 1 {NN|[MP]|[D{I|L}]|[EV]}P{[{M(Oxidation (M))|F}D]|MM}{I|L}N{I|L} 8 -1 + 26.375 0 0 2.7897 2.7897 84.543 0 0 0 0.1772876696043113 18.303206620479813 0.1772876696043113 9.262137858390812 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}P{[{M(Oxidation (M))|F}D]|MM}{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}P{[{M(Oxidation (M))|F}D]|MM}{I|L}GG{I|L} 2.7897;1.81 -;- 27 NaN NaN 99396.6 NaN 14113 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17596 73.9 NaN 88228 35 0 10477 0.261 + 8224 GRRGNAVL 8 49 421.75138183200454 NaN 0 421.7515563964844 PEAK HCD FTMS 0 0 0 17587 9588.4931640625 0.14594755362797052 35 -0.9413986206054688 9 Unmodified _GRRGNAVL_ ENST00000553027.1_1_12:49319137-49319416:-|nuORF 0.7936320650641473 0.38822285293237185 1 V 1 7 6.9897 0 0 0.83064 0 0 130.10541151381534 609.2866304986936 739.3920420125089 0 0 0 0 0 0 0 0 0 + V 0.83064 + + 1 + NaN NaN 92294.9 NaN 14114 3480 17587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17598 73.905 NaN 2946700 35 0 513360 0.327 + 1191 AYLKAIVLF 9 88 519.3233459979147 1036.6321390626292 2 519.3234252929688 MULTI HCD FTMS 0 0 0 17597 1676353.5 0.21264606899886576 6 -0.1629486083984375 1 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 85.35673624503755 0.00464763827098139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 85.901 0 0 8.2865 8.2865 90.619 0 0 0 16.03794667124717 58.31083678214135 16.03794667124717 8.010299956639813 0 3.110924374808178 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};[{I|L}A]YKA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[KA]V{I|L}{M(Oxidation (M))|F};[K{I|L}]YAA{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}A]YKA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[KA]V{M(Oxidation (M))|F}{I|L};[{I|L}A]YKA{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[KA]{I|L}V{M(Oxidation (M))|F} 8.2865;7.5138;7.4165;5.7441;5.7045;5.2769;4.9713;4.9318;4.8741;4.8345 +;-;-;-;-;-;-;-;-;- + 689 NaN NaN 415963.8 NaN 14115 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17599 73.909 NaN 1433500 35 0 268960 0.261 + 24217 RYFLPPYTF 9 79 602.3135920149654 1202.6126310967306 2 602.3135986328125 MULTI HCD FTMS 0 0 0 17597 677936.25 0.06366638176881652 33 -0.8773574829101562 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 62.57269311338072 0.013982455292112035 1 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 10 7 75.34 0 0 6.2647 0 0 0 60.99320452027306 60.99320452027306 62.44772724483049 0 0 0 0 2 1.5228787452803376 1.1861818737241734 0 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 6.2647 - 603 NaN NaN 298336.9 NaN 14116 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17600 73.913 NaN 1200300 35 0 467960 0.261 + 23565 RPDSFVLIL 9 57 530.3136877811668 1058.6128226291335 2 530.3135375976562 MULTI HCD FTMS 0 0 0 17597 586669.1875 0.538387906054773 -3 0.0883941650390625 3 Unmodified _RPDSFVLIL_ ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1 24.990960013464015 0.14443998892849796 1 RV{I|L}{I|L}{I|L} 5 4 47.959 0 0 4.5303 0 0 446.1803150861344 0 446.1803150861344 0 30.996075289514096 0 0 0 1 0 0 0 RV{I|L}{I|L}{I|L} 4.5303 - 53 NaN NaN 264094.6 NaN 14117 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17601 73.916 NaN 487430 35 0 63477 0.261 + 28063 TGPTRFFLF 9 67 543.2926243122614 1084.5706956913227 2 543.2926025390625 MULTI HCD FTMS 0 0 0 17597 169450.171875 0.3409449051097167 -3 0.0883941650390625 4 Unmodified _TGPTRFFLF_ ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF 36.506200033944 0.08138327636155518 1 T{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 4 59.97 0 0 5.5294 0 0 411.2216053693375 0 411.2216053693375 0 48.64589140640131 0 0 0 1.5 0 1.1237125054200234 0 T{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.5294 - 171 NaN NaN 148065.3 NaN 14118 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17602 73.919 NaN 171660 35 0 17051 0.264 + 28801 TTSMHSGS 8 44 404.16961921983085 806.3246855064617 2 404.16986083984375 MULTI HCD FTMS 0 0 0 17597 113361.265625 0.011003601040147068 70 -1.8209991455078125 5 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107216.6 NaN 14119 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17603 73.923 NaN 727300 35 0 112510 0.261 + 28494 TPQFPDMIL 9 70 539.2679605796511 1076.5213682261021 2 539.2676391601562 MULTI HCD FTMS 0 0 0 17597 244506.796875 0.03387843023426595 -8 0.22599029541015625 6 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 61.60191391372663 0.015340508911304802 1 {M(Oxidation (M))|F}DPPMN{I|L} 7 6 57.431 0 0 5.3349 0 0 244.17846877265782 0 244.17846877265782 0 41.94644339199135 0 0 0 1.613982988912431 0 0.7614393726401688 0.2742275032520141 {M(Oxidation (M))|F}DPPMN{I|L} 5.3349 - 664 NaN NaN 188802 NaN 14120 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17604 73.926 NaN 247550 35 0 33812 0.261 -1 0 67 622.2948358044622 1242.5751186757243 2 622.2946166992188 MULTI HCD FTMS 0 0 0 17597 66358.5078125 0.0365478359680706 52 -1.375 7 NaN NaN 1 Y{I|L}{M(Oxidation (M))|F} 3 -1 34.45 0 0 2.7725 0 0 801.3497791974625 0 801.3497791974625 0 7.003187623076954 0 0 0 0.8252574989159953 0 0 0 Y{I|L}{M(Oxidation (M))|F} 2.7725 - 294 NaN NaN 133844.3 NaN 14121 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17605 73.929 NaN 229970 35 0 34485 0.262 + 26437 STIWCAELV 9 57 511.2549282412626 1020.4953035493252 2 511.2548828125 MULTI HCD FTMS 0 0 0 17597 60327.19921875 0.07693488833330371 39 -1.0394973754882812 8 Unmodified _STIWCAELV_ REV__ENST00000591437.5_1_17:75202822-75202930:+|nuORF 6.723162845929126 0.3000504726104499 1 V{I|L} 2 -1 17.959 0 0 1.7598 0 0 790.330858299025 0 790.330858299025 0 12.016675202793719 0 0 0 0 0 0 0 V{I|L} 1.7598 - 41 NaN NaN 120714.6 NaN 14122 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17606 73.933 NaN 200020 35 0 31108 0.261 + 15451 LPDLERLL 8 56 484.7925514725268 967.5705500118536 2 484.7928466796875 MULTI HCD FTMS 0 0 0 17597 58877.0625 1 0 0 9 Unmodified _LPDLERLL_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 8.745405648335112 0.5290173259557154 1 {I|L}PD{I|L} 4 4 29.725 0 0 3.0721 0 0 0 526.2979830377561 526.2979830377561 13.526909627198407 0 0 0 0 0.3807196863200844 0 0 0 + {I|L}PD{I|L} 3.0721 + + 67 + NaN NaN 108123.9 NaN 14123 3481 17597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17608 73.937 NaN 917130 35 0 41832 0.327 + 32989 YASFIKEIQ 9 104 549.795499584766 1097.576446236332 2 549.8136596679688 MULTI HCD FTMS 0 0 0 17607 128755.7890625 0.09602753018135429 12 -0.30908966064453125 1 Unmodified _YASFIKEIQ_ REV__tr|U7SJF1|U7SJF1_FUSNUThiamine-phosphatepyrophosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02118PE=4SV=1 19.256988751693697 0.19398022840297344 1 MKT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}] 9 -1 + 42.017 0 0 3.8281 3.8281 87.428 0 0 0 -0.6842248412769152 7.3569535504672245 -0.6842248412769152 18.459631730416334 0 0.5 0 0.555462187404089 0.7059771852360797 MKT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}];[WP]VD{I|L}VE[Q{I|L}];MKT[RV][QA][HQ];MKT{[{M(Oxidation (M))|F}C]|[YS]}V[TA]VV;MKT{[{M(Oxidation (M))|F}C]|[YS]}V{[SA]|[TG]}[{I|L}V];[WP]V[RN]W[Q{I|L}];[DP]{[RE]|[WV]}{I|L}VE[Q{I|L}];[DP]{I|L}{[RE]|[WV]}VE[Q{I|L}];[WP][QA]AA{I|L}[WR];{NN|[MP]|[D{I|L}]|[EV]}P{[DS]|[MA]|[CV]|TT}{I|L}PT[Q{I|L}] 3.8281;2.1463;1.8309;1.6591;1.4986;1.4296;1.2921;0.89755;0.74729;0.72232 -;-;-;-;-;-;-;-;-;- 2149 + NaN NaN 219488.2 NaN 14124 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17609 73.942 NaN 360650 35 0 26180 0.263 -1 0 77 435.250960108541 868.487367283882 2 435.2511291503906 MULTI HCD FTMS 0 0 0 17607 305618.40625 0.7359269372829232 -1 0.03284454345703125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.259 0 0 1.2964 0 0 703.408462109857 0 703.408462109857 0 0.2899597348884342 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2964 - 5 + NaN NaN 144420.2 NaN 14125 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17610 73.945 NaN 646720 35 0 34814 0.261 + 142 AEFKEAFSLF 10 88 594.8003164292935 1187.586079925387 2 594.8001708984375 MULTI HCD FTMS 0 0 0 17607 285458.625 0.5635104336408229 -2 0.06563568115234375 3 Unmodified _AEFKEAFSLF_ ENSG00000143933|ENST00000272298|CALM2;ENSG00000160014|ENST00000291295|CALM3;ENSG00000198668|ENST00000356978|CALM1;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF 60.899326713953855 0.038151090291573736 1 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}KEA{M(Oxidation (M))|F}S{I|L} 9 3 66.124 0 0 5.568 0 0 0 162.0591649630641 162.0591649630641 52.3122157770505 0 0 0 0 2.1549471895720984 1.5228787452803376 0.7742275032520141 0 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}KEA{M(Oxidation (M))|F}S{I|L} 5.568 - 1728 NaN NaN 177964.7 NaN 14126 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17611 73.949 NaN 263370 35 0 20163 0.261 + 19915 NYFLWTEKF 9 68 624.3087289434097 1246.6029049536194 2 624.308349609375 MULTI HCD FTMS 0 0 0 17607 141984.578125 0.17856192908702262 7 -0.17209625244140625 4 Unmodified _NYFLWTEKF_ ENSG00000100351|ENST00000344138|GRAP2 73.1962812333195 0.00805395026373928 1 [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 9 0 + 103.31 0 0 8.2875 8.2875 96.228 0 0 0 21.94660339379311 16.478174818886373 16.478174818886373 36.651603310239906 0 2.6861818737241734 1.6989700043360187 0.3252574989159953 0.7614393726401688 + + [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}WT[VS]A{M(Oxidation (M))|F};[RH]ET[KS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC];[RH][HT][YQ]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.2875;5.3474;1.9878;1.7063 +;-;-;- + 588 NaN NaN 140170.4 NaN 14127 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17612 73.952 NaN 175100 35 0 24698 0.261 + 28909 TWGDNSELSF 10 62 578.2520141470978 1154.4894753609956 2 578.2518310546875 MULTI HCD FTMS 0 0 0 17607 21989.80859375 0.22917839653682529 -5 0.15412139892578125 5 Unmodified _TWGDNSELSF_ REV__ENSG00000176208|ENST00000321990|ATAD5 18.1463463914782 0.3413772152514074 1 {[WT]|[RM]}TEVS[DN]G{M(Oxidation (M))|F} 10 -1 + 46.592 0 0 4.0357 4.0357 89.482 0 0 0 19.156687756324686 10.529324278304912 10.529324278304912 46.59170039340886 0 1.5 0 0.4247425010840047 0 {[WT]|[RM]}TEVS[DN]G{M(Oxidation (M))|F} 4.0357 - 205 + NaN NaN 107681.7 NaN 14128 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17613 73.955 NaN 670350 35 0 109740 0.264 -1 MYIFFCMLF 9 72 410.85158680118025 1229.5329310037407 3 410.8515625 MULTI HCD FTMS 0 0 0 17607 189782.296875 0.3733664998340978 -1 0.03284454345703125 6 Oxidation (M) _MYIFFCM(Oxidation (M))LF_ ENST00000440205.5_1_21:26796964-26797018:-|nuORF 2.9952420565917617 0.3283108881486655 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2594 0 0 1064.4540410885047 0 1064.4540410885047 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2594 + + 74 + NaN NaN 185670.5 NaN 14129 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17614 73.959 NaN 393630 35 0 26150 0.261 + 30870 VQPRNWLLF 9 75 586.8324733058458 1171.6503936784916 2 586.8330688476562 MULTI HCD FTMS 0 0 0 17607 75431.515625 0.01941482470191456 39 -1.042755126953125 7 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 20.453626601364224 0.18364154288633264 1 [YT]V 3 9 27.447 0 0 2.3426 0 0 0 805.4490731684631 805.4490731684631 2.3978685854810777 0 0 0 0 0 2 0 0 [YT]V 2.3426 - 191 NaN NaN 153020.8 NaN 14130 3482 17607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17616 73.964 NaN 1295600 35 0 350740 0.327 + 18692 MYPYIFHVL 9 98 599.8019811851997 1197.5894094371993 2 599.8017578125 MULTI HCD FTMS 0 0 0 17615 862369.5625 1 0 0 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.664 0 0 6.5685 6.5685 87.854 0 0 0 5.6424927368725974 57.492822134202015 5.6424927368725974 8.508789897260414 0 2.7059771852360797 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};YY{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}HV{I|L};[Y{M(Oxidation (M))|F}]P[WK][MD]V{I|L};[Y{M(Oxidation (M))|F}]PA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[MT]V{I|L};[NS]N[HK]W[NS]V{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L} 6.5685;5.858;4.8936;2.1846;2.0244;1.8197;0.4042;0.28218 +;+;-;-;-;-;-;- + 905 NaN NaN 283723.2 NaN 14131 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17617 73.968 NaN 2059500 35 0 369910 0.263 + 15901 LPLPSDTVL 9 78 477.7790842103957 953.5436154875914 2 477.7789001464844 MULTI HCD FTMS 0 0 0 17615 1183603.875 1 0 0 2 Unmodified _LPLPSDTVL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 42.09456458481378 0.05572955244001856 1 [PS][VP]{[QN]|[E{I|L}]|[KN]}TV{I|L} 9 4 + 44.873 0 0 4.7059 4.7059 90.346 0 0 0 7.702264589233394 6.15787713959719 6.15787713959719 44.87265918458512 0 0.2742275032520141 1.5228787452803376 1.1549471895720984 0 [PS][VP]{[QN]|[E{I|L}]|[KN]}TV{I|L} 4.7059 - 356 NaN NaN 410325.9 NaN 14132 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17618 73.972 NaN 630310 35 0 44616 0.261 + 1202 AYLKFLDQF 9 102 572.8059954988838 1143.5974380645675 2 572.8053588867188 MULTI HCD FTMS 0 0 0 17615 213038.515625 0.2041207236040963 7 -0.165435791015625 3 Unmodified _AYLKFLDQF_ ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2 82.5293158979368 0.005033931517079822 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F} 9 0 + 69.408 0 0 6.0693 6.0693 88.054 0 0 0 11.020599913279625 16.478174818886373 11.020599913279625 9.208187539523749 0 2.0356668758921828 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};[Y{I|L}]AK{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};[Y{I|L}]AK{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}E]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RH][{I|L}P]Q{M(Oxidation (M))|F};[Y{I|L}]AK{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}E]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}N;[Y{I|L}]AK{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}N 6.0693;5.2641;5.1056;4.3004;3.9836;3.3176;3.0199;3.001;2.0373 +;-;-;-;-;-;-;-;- + 861 NaN NaN 188099.2 NaN 14133 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17619 73.975 NaN 362490 35 0 70629 0.261 -1 0 58 488.77005466890915 975.5255564046183 2 488.7703552246094 MULTI HCD FTMS 0 0 0 17615 209648.09375 1 0 0 4 NaN NaN 1 {I|L}P{I|L}P 4 -1 52.907 0 0 5.4235 0 0 0 552.2322481744749 552.2322481744749 49.685515641346036 0 0 0 0 1 1.3979400086720375 0 0 {I|L}P{I|L}P 5.4235 - 41 + NaN NaN 132580.7 NaN 14134 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17620 73.978 NaN 200760 35 0 14249 0.261 + 5767 FPAHILDCL 9 67 514.7650308414508 1027.5155087497014 2 514.7655029296875 MULTI HCD FTMS 0 0 0 17615 177339.671875 0.1411468917520963 18 -0.4720001220703125 5 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 85.35673624503755 0.00464763827098139 1 {M(Oxidation (M))|F}PHA{I|L}{I|L}DC{I|L} 9 2 + 48.145 0 0 4.6856 4.6856 81.48 0 0 0 19.830787802852043 0.8455302980764401 0.8455302980764401 1.3502935127679194 0 1.8737125054200234 0 1.336696871556164 0 {M(Oxidation (M))|F}PHA{I|L}{I|L}DC{I|L};{M(Oxidation (M))|F}PA{M(Oxidation (M))|F}{I|L}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PAH{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{M(Oxidation (M))|F}C{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}PA{I|L}{I|L}DC{I|L};[WY]{I|L}{I|L}WT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};{I|L}[WY]{I|L}WT{M(Oxidation (M))|F} 4.6856;4.5542;4.5142;4.0991;3.9937;3.6201;3.1532;3.0093 -;-;+;-;-;-;-;- + 208 + NaN NaN 118111 NaN 14135 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17621 73.982 NaN 374280 35 0 37498 0.261 + 29798 VEKGFRTLL 9 72 531.8207419707686 1061.6269310083371 2 532.3050537109375 MULTI HCD FTMS 0 0 0 17615 41418.58984375 0.582956558704489 -3 0.09172821044921875 6 Unmodified _VEKGFRTLL_ ENST00000524141.5_1_8:48192552-48196623:+|nuORF 22.736283301280096 0.1639198954644489 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}DK 8 8 42.829 0 0 4.0343 0 0 0 127.0956091368512 127.0956091368512 2.346368802282015 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}DK 4.0343 - 819 NaN NaN 157555.7 NaN 14136 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17622 73.985 NaN 147640 35 0 28734 0.261 + 34305 YPDTDVFL 8 45 485.2319063785871 968.4492598239742 2 485.2320251464844 MULTI HCD FTMS 0 0 0 17615 137543.421875 0.5069624280902131 -6 0.18021392822265625 7 Unmodified _YPDTDVFL_ ENSG00000104140|ENST00000220507|RHOV 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F}{I|L} 2 6 25.969 0 0 2.6815 0 0 690.2852611830386 0 690.2852611830386 0 18.979400086720375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.6815 + + 15 NaN NaN 112665.1 NaN 14137 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17623 73.988 NaN 141260 35 0 6888.1 0.261 -1 NTPDCTESSCF 11 58 630.7263834960137 NaN 0 630.7931518554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _NTPDC(Carbamidomethyl (C))TESSCF_ ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1-SDCCAG3|1|fusion;NOTCH1|p.C1169Afs*10|1|0.38|ENSG00000148400|chr9:136507961-136507961|G/-|frameshift_variant;NOTCH1|p.C1311Afs*134|1|0.5|ENSG00000148400|chr9:136506610-136506610|A/-|frameshift_variant;NOTCH1|p.C1352Lfs*48|1|0.32|ENSG00000148400|chr9:136505828-136505841|GCGCAGGCTGCCGC/-|frameshift_variant;NOTCH1|p.D1267Gfs*24|1|0.53|ENSG00000148400|chr9:136506817-136506818|-/C|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.E1148Sfs*31|1|0.1|ENSG00000148400|chr9:136508023-136508023|C/-|frameshift_variant;NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.H1299Sfs*48|1|0.15|ENSG00000148400|chr9:136506722-136506723|-/A|frameshift_variant;NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant 2.282774691075616 0.33564456907475565 1 Q{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.87095 0 0 166.02255168988682 815.2729893732841 981.295541063171 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 0.87095 - 50 + NaN NaN 104216.6 NaN 14138 3483 17615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17625 73.993 NaN 41068000 35 0 5859200 0.327 + 35581 YYIFIPSKF 9 83 589.318302735094 1176.622052536988 2 589.3189086914062 MULTI HCD FTMS 0 0 0 17624 34634628 1 0 0 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 139.13845188893973 5.0762478717762276E-05 1 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 104 0 0 8.8388 8.8388 93.99 0 0 0 10.916375079047498 10.916375079047498 10.916375079047498 10.916375079047498 0 2.774227503252014 1.6989700043360187 1.5713337517843657 0.2742275032520141 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{I|L}YPSK{M(Oxidation (M))|F} 8.8388;7.9111;6.7196;6.1634;6.0767;6.0728;5.7202;5.576;5.3147;5.2372 +;-;-;-;-;-;-;-;-;- + 2018 + NaN NaN 775191.7 NaN 14139 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17626 73.997 NaN 2368300 35 0 230400 0.255 + 22091 QHYVFEAKE 9 122 575.7790029674118 1149.5434530016234 2 575.7928466796875 MULTI HCD FTMS 0 0 0 17624 351723.625 0.3895793687994829 12 -0.30519866943359375 2 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 22.736283301280096 0.1639198954644489 1 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 7 55.161 0 0 4.7985 0 0 0 128.04389692839723 128.04389692839723 4.700936638974248 0 0 0 0 0.3494850021680094 1.154901959985743 1.3441876774005248 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.7985 - 14122 NaN NaN 437098.4 NaN 14140 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17627 74.001 NaN 1310400 35 0 153910 0.261 + 28925 TWTEVSYTF 9 93 567.2613992812029 1132.5082456292057 2 567.26123046875 MULTI HCD FTMS 0 0 0 17624 721954.4375 1 0 0 3 Unmodified _TWTEVSYTF_ ENSG00000116663|ENST00000376753|FBXO6 115.6920309560759 0.002013163348980568 1 [YE][QP]VSYT{M(Oxidation (M))|F} 9 4 + 77.34 0 0 6.8291 6.8291 84.682 0 0 0 0.27771166979179895 5.591283779146551 0.27771166979179895 0.27771166979179895 0 2 1.3979400086720375 0.9258337024346173 0 [YE][QP]VSYT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SPEVSYT{M(Oxidation (M))|F};[YQ]PEVSYT{M(Oxidation (M))|F};{[WT]|[RM]}TEVSYT{M(Oxidation (M))|F};[YT]{[HG]|PP}{[SA]|[TG]}SYT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SP{[TV]|[{I|L}S]}DYT{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EQV[HN]T{M(Oxidation (M))|F};[YQ]P{[TV]|[{I|L}S]}DYT{M(Oxidation (M))|F};{[WT]|[RM]}T{[TV]|[{I|L}S]}DYT{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E[AG]V[HN]T{M(Oxidation (M))|F} 6.8291;6.8046;6.3354;6.1799;5.827;4.9018;4.6537;4.4326;4.2771;3.8406 -;-;-;+;-;-;-;-;-;- + 2589 + NaN NaN 282517.9 NaN 14141 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17628 74.004 NaN 455150 35 0 105550 0.263 -1 0 49 425.7418746033724 849.4691962735449 2 425.7420959472656 MULTI HCD FTMS 0 0 0 17624 297746.65625 0.8119207979750837 -5 0.1473236083984375 4 NaN NaN 1 PS 2 -1 12.619 0 0 1.4856 0 0 537.289491538973 125.07192407779532 662.3614156167683 0 0 0 0 0 0 0 0.6421590589602533 0 PS 1.4856 - 56 + NaN NaN 154937.6 NaN 14142 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17629 74.008 NaN 548600 35 0 55698 0.261 + 11977 KFRYNELMQ 9 97 614.8119408009363 NaN 0 614.793212890625 PEAK HCD FTMS 0 0 0 17624 34719.91015625 0.7248755385107845 2 -0.048614501953125 5 Unmodified _KFRYNELMQ_ ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 18.1463463914782 0.1998403495282098 1 {I|L}AWVYY 6 9 29.157 0 0 2.3751 0 0 164.08242544777255 265.13083826236567 429.2132637101382 0 0 0 0 0 0 0 0 0 {I|L}AWVYY 2.3751 - 1050 + NaN NaN 166007.8 NaN 14143 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17630 74.011 NaN 211650 35 0 26888 0.264 -1 0 45 405.8635054339661 1214.5686869020983 3 406.1980895996094 MULTI HCD FTMS 0 0 0 17624 92114.703125 0.3457856475876761 1 -0.02928924560546875 6 NaN NaN 1 YY 2 -1 39.464 0 0 3.2492 0 0 0 885.4197380719088 885.4197380719088 24.85985638199878 0 0 0 0 0 2 0 0 YY 3.2492 - 9 + NaN NaN 111389.6 NaN 14144 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17631 74.014 NaN 324630 35 0 20524 0.261 + 15181 LMTTMSEFFD 10 63 611.2612157179325 1220.5078785026649 2 611.2608642578125 MULTI HCD FTMS 0 0 0 17624 183362.71875 1 0 0 7 Unmodified _LMTTMSEFFD_ ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-3|TRIM66 17.11289562659939 0.35104376501799556 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AM{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 6 + 52.937 0 0 4.3373 4.3373 90.058 0 0 0 2.7993115576675365 45.94720941673181 2.7993115576675365 51.251837901751 0 2.2302046884880937 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AM{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[HD][RN]M{[WT]|[RM]} 4.3373;0.13806 -;- 77 NaN NaN 134475.6 NaN 14145 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17632 74.018 NaN 439170 35 0 33293 0.261 + 22789 QYLEHILGF 9 87 560.2955539828669 NaN 0 560.2955932617188 PEAK HCD FTMS 0 0 0 17624 274829.78125 1 0 0 8 Unmodified _QYLEHILGF_ ENSG00000221909|ENST00000449309|FAM200A 74.42276476219924 0.00481387315266945 1 {I|L}{I|L}{I|L}{I|L}N 5 6 16.058 0 0 1.4356 0 0 240.11307214874915 309.0584810846313 549.1715532333805 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{I|L}{I|L}N 1.4356 - 489 + NaN NaN 144340.6 NaN 14146 3484 17624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17634 74.022 NaN 2675100 35 0 325340 0.327 + 13255 KYMDIEFDF 9 113 604.2705237789751 1206.52649462475 2 604.270751953125 MULTI HCD FTMS 0 0 0 17633 2049724.5 0.7495450015998537 2 -0.045318603515625 1 Unmodified _KYMDIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 145.12958885780327 1.3974915176135797E-05 1 [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 91.606 0 0 7.5926 7.5926 89.31 0 0 0 7.632414347745794 16.478174818886373 7.632414347745794 7.632414347745794 0 2.7302046884880937 0 1.6005762035186217 0.6237125054200234 + + [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{[CA]|SS}{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ET]|[MV]}[YE]KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KD{M(Oxidation (M))|F};YYDP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{M(Oxidation (M))|F} 7.5926;6.96;5.5974;5.4989;4.8857;4.3322;4.229;4.1959;3.9913;3.904 +;-;-;-;-;-;-;-;-;- + 4618 NaN NaN 491064 NaN 14147 3485 17633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17635 74.027 NaN 1681500 35 0 248340 0.261 + 5216 FFDAELSQM 9 94 544.2418377696521 1086.469122606104 2 544.2422485351562 MULTI HCD FTMS 0 0 0 17633 702220.75 0.2987966789530511 -4 0.1176300048828125 2 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 86.573 0 0 7.9683 7.9683 88.033 0 0 0 3.368193983395628 10.753275481665284 3.368193983395628 3.368193983395628 0 2.594187677400525 0 1.4194451763165201 0.2614393726401688 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;[YN]S{I|L}EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQM;{[QS]|[NT]}[YV]EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}[MT]N;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]M;{[QS]|[NT]}M{I|L}{M(Oxidation (M))|F}AD[{M(Oxidation (M))|F}E];{[ES]|[DT]|[{I|L}C]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YV]SQM;{[QS]|[NT]}{I|L}M{M(Oxidation (M))|F}AD[{M(Oxidation (M))|F}E] 7.9683;7.6583;6.8801;5.0199;4.8184;4.5538;3.9317;3.3856;3.1914;3.1814 +;-;-;-;-;-;-;-;-;- + 1268 NaN NaN 331351.4 NaN 14148 3485 17633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17636 74.03 NaN 579910 35 0 54695 0.261 + 8370 GYLHVFYDF 9 94 580.7744647073438 1159.5343764814875 2 580.7749633789062 MULTI HCD FTMS 0 0 0 17633 149366.078125 0.6109199386972964 1 -0.01932525634765625 3 Unmodified _GYLHVFYDF_ ENSG00000112769|ENST00000230538|LAMA4;ENST00000519245.1_1_6:112457126-112460429:-|nuORF;nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4 85.35673624503755 0.00464763827098139 1 [YG]{I|L}HV{M(Oxidation (M))|F}YD{M(Oxidation (M))|F} 9 0 + 70.53 0 0 6.0826 6.0826 89.091 0 0 0 49.10351040942807 16.478174818886373 16.478174818886373 10.013487579716767 0 2.110924374808178 1.3979400086720375 0.7059771852360797 0 + + [YG]{I|L}HV{M(Oxidation (M))|F}YD{M(Oxidation (M))|F};[YG]{I|L}HVY{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHV{M(Oxidation (M))|F}YD{M(Oxidation (M))|F};[YG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[RV]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ET]|[MV]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}RYD{M(Oxidation (M))|F};YYTYVH[PA]{M(Oxidation (M))|F};YYTYVA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};YYTYVH{I|L}{[DS]|[MA]|[CV]|TT};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YK]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT};{[ET]|[MV]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EH[PA]{M(Oxidation (M))|F} 6.0826;5.2191;3.7185;3.3089;2.5527;1.5291;1.1594;0.68639;0.15785;0.15631 +;-;-;-;-;-;-;-;-;- + 539 + NaN NaN 166689.7 NaN 14149 3485 17633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17637 74.034 NaN 432530 35 0 45105 0.261 -1 VMLMLLTLL 9 86 531.8207419707686 1061.6269310083371 2 532.3057250976562 MULTI HCD FTMS 0 0 0 17633 65849.6171875 0.9268173149411455 -2 0.05869293212890625 4 Oxidation (M) _VM(Oxidation (M))LMLLTLL_ ENSG00000139636|ENST00000267102|LMBR1L;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-2|LMBR1L;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-5|LMBR1L 21.74664581756881 0.17247014374749275 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}DK 8 -1 44.334 0 0 4.176 0 0 0 127.09286611063807 127.09286611063807 2.7030375612038426 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}DK 4.176 - 1524 NaN NaN 144046.4 NaN 14150 3485 17633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17638 74.037 NaN 368270 35 0 37612 0.261 + 17162 LYLRGLVYL 9 79 555.3398225488066 NaN 0 555.3391723632812 PEAK HCD FTMS 0 0 0 17633 133355.125 0.9400738094359543 1 -0.01932525634765625 5 Unmodified _LYLRGLVYL_ ENSG00000105339|ENST00000519811|DENND3;ENST00000520482.1_1_8:142168222-142185717:+|nuORF;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3 34.10243960390752 0.09718911733815057 1 {M(Oxidation (M))|F}DAE{I|L}S 6 8 19.351 0 0 1.7454 0 0 147.28180466616942 296.06833826236567 443.3501429285351 0 0 0 0 0 0 0 0.28872548999643577 0 {M(Oxidation (M))|F}DAE{I|L}S 1.7454 - 75 + NaN NaN 139691.4 NaN 14151 3485 17633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17640 74.042 NaN 843770 35 0 303160 0.327 -1 0 53 413.1934236862167 824.3722944392334 2 413.193359375 MULTI HCD FTMS 0 0 0 17639 586251.625 0.4420012138507152 38 -1.0002365112304688 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 205063.8 NaN 14152 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17641 74.046 NaN 537820 35 0 45553 0.261 + 11873 KFDFPVSYL 9 77 558.2921585876587 1114.5697642421173 2 558.2926025390625 MULTI HCD FTMS 0 0 0 17639 147667.453125 0.2529409041054681 -3 0.0780181884765625 2 Unmodified _KFDFPVSYL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 57.72198328787511 0.020768266150574023 1 {M(Oxidation (M))|F}[VP]SY{I|L} 6 3 52.396 0 0 4.701 0 0 390.18919570136876 0 390.18919570136876 0 33.751064929780554 0 0 0 1.6989700043360187 0 0.8494850021680094 0 + {M(Oxidation (M))|F}[VP]SY{I|L} 4.701 + + 286 NaN NaN 162437.3 NaN 14153 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17642 74.05 NaN 690020 35 0 234030 0.261 + 24015 RWFQPAIPSW 10 64 644.3355893304046 1286.656625727609 2 644.3357543945312 MULTI HCD FTMS 0 0 0 17639 316693.84375 0.42120008781268203 -3 0.0780181884765625 3 Unmodified _RWFQPAIPSW_ ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF;nc|ENSG00000092929|Q70J99-3|UNC13D 45.739877483867886 0.09559676962230333 1 Q[PA]{I|L}PSW 7 3 62.083 0 0 4.8251 0 0 489.2541121551465 0 489.2541121551465 0 54.635701079416634 0 0 0 2.8494850021680094 0 0.4247425010840047 0 + Q[PA]{I|L}PSW 4.8251 + + 189 + NaN NaN 193772 NaN 14154 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17643 74.053 NaN 1018300 35 0 49334 0.262 + 17548 LYVLPLSIGF 10 116 561.3339814742221 1120.6534100152442 2 561.3169555664062 MULTI HCD FTMS 0 0 0 17639 31940.86328125 0.07523488736638932 9 -0.237884521484375 4 Unmodified _LYVLPLSIGF_ REV__ENSG00000101337|ENST00000398022|TM9SF4 32.30548876998284 0.21217886106551395 1 [Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F} 10 -1 + 54.594 0 0 4.8716 4.8716 82.603 0 0 0 30.63676170642164 5.764837301042718 5.764837301042718 3.1259189508755014 0 0.9802046884880937 1.5228787452803376 0.5228787452803376 0 [Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}[VG]T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}{[TV]|[{I|L}S]}G{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}Q[Y{I|L}];[Y{I|L}]{I|L}VP{I|L}[AG][Y{I|L}];VV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KR{I|L}T{M(Oxidation (M))|F};VVV{M(Oxidation (M))|F}{I|L}[PS]{I|L}T{M(Oxidation (M))|F};[{I|L}V][Y{I|L}]P[VG]{I|L}T{M(Oxidation (M))|F};[{I|L}V][Y{I|L}]P{I|L}[VG]T{M(Oxidation (M))|F} 4.8716;4.5926;3.8221;3.291;2.4693;2.1069;1.9089;1.0308;0.75182 -;-;-;-;-;-;-;-;- 3431 + NaN NaN 245010 NaN 14155 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17644 74.056 NaN 253540 35 0 28112 0.261 + 6553 FPLDKSLLL 9 60 523.31823406965 1044.6219152060999 2 523.3178100585938 MULTI HCD FTMS 0 0 0 17639 138706.65625 0.8213227613580115 -3 0.0780181884765625 5 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 41.95555342248728 0.056367691549927025 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}RRP{M(Oxidation (M))|F}{I|L} 8 5 + 48.594 0 0 4.6518 4.6518 87.94 0 0 0 9.877203139966326 28.060931587959672 9.877203139966326 15 0 1 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}RRP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RR{I|L}P{M(Oxidation (M))|F}{I|L} 4.6518;3.2159 -;- 140 NaN NaN 120574.2 NaN 14156 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17645 74.059 NaN 261210 35 0 16899 0.261 + 29534 TYVYMCHVGV 10 74 586.2676777977645 1170.5208026623288 2 586.2686157226562 MULTI HCD FTMS 0 0 0 17639 55597.7890625 0.042200141036430376 26 -0.6912078857421875 6 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 15.847184025352803 0.36288280428275715 1 [YT]VY[C(Carbamidomethyl (C))C]H{I|L}{I|L} 9 4 + 48.847 0 0 4.1731 4.1731 88.431 0 0 0 31.143937264016866 1.7192245835725117 1.7192245835725117 24.134708848135908 0 1.3494850021680094 2 0 0 [YT]VY[C(Carbamidomethyl (C))C]H{I|L}{I|L};[YT]V[MN]{[WN]|[YH]}M{I|L} 4.1731;2.1112 -;- 178 + NaN NaN 121202.2 NaN 14157 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17646 74.063 NaN 230210 35 0 20633 0.262 + 14159 LAGPICLHL 9 65 468.77215576171875 NaN 0 468.77215576171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LAGPICLHL_ REV__ENST00000454607.5_1_20:34261567-34261603:-|nuORF 9.347437153973935 0.2499504662953367 1 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 5 -1 9.6184 0 0 1.0281 0 0 98.13850292793127 194.09371362857658 292.23221655650786 0 0 0 0 0 0 0 0 0.2742275032520141 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 1.0281 - 47 + NaN NaN 120911.4 NaN 14158 3486 17639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17648 74.068 NaN 4153500 35 0 763790 0.327 + 28495 TPQFPDMIL 9 86 539.2679605796511 1076.5213682261021 2 539.2681274414062 MULTI HCD FTMS 0 0 0 17647 3780661.25 0.523841750145694 -2 0.045318603515625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 99.75527289724121 0.004270341300239591 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 87.387 0 0 8.1176 8.1176 88.603 0 0 0 3.979400086720375 16.478174818886373 3.979400086720375 3.979400086720375 0 2 0 1.781234684152075 0.2742275032520141 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{I|L}{[QC]|[C(Carbamidomethyl (C))A]}EPD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};{I|L}{[QC]|[C(Carbamidomethyl (C))A]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}TP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[TP]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};[QP]T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}T 8.1176;7.7479;7.0713;6.7917;6.6378;4.4041;2.1507;1.8697;1.781;1.1477 -;+;-;-;-;-;-;-;-;- + 1099 NaN NaN 719134.8 NaN 14159 3487 17647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17649 74.072 NaN 924160 35 0 340400 0.261 + 23566 RPDSFVLIL 9 59 530.3136877811668 1058.6128226291335 2 530.313720703125 MULTI HCD FTMS 0 0 0 17647 444908.4375 0.40829368092853163 3 -0.06142425537109375 2 Unmodified _RPDSFVLIL_ ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1 23.789781309258295 0.1548179064208189 1 {M(Oxidation (M))|F}V{I|L}{I|L}{I|L} 5 4 39.693 0 0 3.7495 0 0 455.2190113751969 0 455.2190113751969 0 22.826508284614093 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}V{I|L}{I|L}{I|L} 3.7495 + + 30 NaN NaN 217390.1 NaN 14160 3487 17647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17650 74.076 NaN 407790 35 0 69667 0.261 + 3889 EPNPYKVTPF 10 73 596.3075780149298 1190.6006030966596 2 596.3075561523438 MULTI HCD FTMS 0 0 0 17647 102680.3984375 0.2865208805850802 4 -0.09387969970703125 3 Unmodified _EPNPYKVTPF_ REV__ENSG00000169299|ENST00000381967|PGM2;REV__ENST00000505986.5_1_4:37841281-37848924:+|nuORF;REV__nc|ENSG00000169299|Q96G03-2|PGM2;REV__PGM2|p.A349Pfs*41|1|0.27|ENSG00000169299|chr4:37846964-37846964|G/-|frameshift_variant 8.155526934196011 0.43213520406898465 1 {I|L}{M(Oxidation (M))|F}{I|L}RR{M(Oxidation (M))|F} 6 -1 33.148 0 0 2.7842 0 0 340.10544103602376 0 340.10544103602376 0 12.42992819099939 0 0 0 1.774227503252014 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}RR{M(Oxidation (M))|F} 2.7842 - 328 NaN NaN 151949.1 NaN 14161 3487 17647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17651 74.079 NaN 714320 35 0 95443 0.261 + 35675 YYIYSQTYF 9 80 624.284739077969 1246.554925222738 2 624.2845458984375 MULTI HCD FTMS 0 0 0 17647 445242.5625 0.5018463803126406 -2 0.045318603515625 4 Unmodified _YYIYSQTYF_ ENSG00000121858|ENST00000241261|TNFSF10 103.35351024395868 0.004027461563756449 1 YY{I|L}YSQTY{M(Oxidation (M))|F} 9 0 + 95.8 0 0 7.6852 7.6852 90.966 0 0 0 21.12704280191288 66.46836304267161 21.12704280191288 9.208187539523749 0 2.274227503252014 1.3979400086720375 1.3494850021680094 0 + + YY{I|L}YSQTY{M(Oxidation (M))|F};YY{I|L}YS[AG]TY{M(Oxidation (M))|F};YY{I|L}YSYTQ{M(Oxidation (M))|F};YY{I|L}YSYT[AG]{M(Oxidation (M))|F};[YT]P[WP]HHY{M(Oxidation (M))|F};[YT]P[WP]YHH{M(Oxidation (M))|F};YY{I|L}YS{[NV]|[RG]}YY;[YT]{[QS]|[NT]}{M(Oxidation (M))|F}Y{I|L}YY 7.6852;6.9465;5.0575;4.3188;4.0362;4.0362;3.3946;1.5875 +;-;-;-;-;-;-;- + 1241 NaN NaN 197397.9 NaN 14162 3487 17647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17653 74.084 NaN 1458100 35 0 217530 0.327 + 1192 AYLKAIVLF 9 77 519.3233459979147 1036.6321390626292 2 519.3232421875 MULTI HCD FTMS 0 0 0 17652 719271.0625 0.09123980352906622 13 -0.3519744873046875 1 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 85.35673624503755 0.00464763827098139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 84.324 0 0 8.1345 8.1345 92.709 0 0 0 20.87128018967597 70.51206571517739 20.87128018967597 10.268024924119672 0 3.004432191740108 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};[{I|L}V][{I|L}A]A[YK]{I|L}{M(Oxidation (M))|F};[{I|L}V][{I|L}A]A[Y{I|L}]K{M(Oxidation (M))|F};[{I|L}V][{I|L}A]A[Y{I|L}]{M(Oxidation (M))|F}K 8.1345;7.1439;2.2966;1.3061;0.24301 +;-;-;-;- + 302 NaN NaN 311678.5 NaN 14163 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17654 74.088 NaN 376250 35 0 23386 0.261 -1 0 76 435.250960108541 868.487367283882 2 435.2508850097656 MULTI HCD FTMS 0 0 0 17652 318760.9375 0.7675740585726201 5 -0.13353729248046875 2 NaN NaN 1 V 1 -1 7.7642 0 0 0.89399 0 0 542.2941127446227 224.09772669010002 766.3918394347227 0 0 0 0 0 0.5 0 0 0 V 0.89399 - 13 + NaN NaN 155907.2 NaN 14164 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17655 74.092 NaN 980280 35 0 39117 0.261 -1 0 110 550.2591237284136 1098.503694523627 2 550.7610473632812 MULTI HCD FTMS 0 0 0 17652 214180.234375 0.4329614964526149 -1 0.01601409912109375 3 NaN NaN 1 TPQ{M(Oxidation (M))|F}PD 6 -1 47.579 0 0 4.3312 0 0 0 410.17438684635005 410.17438684635005 20.628427830749636 0 0 0 0 1.305462187404089 0 0.4247425010840047 0.23965182871044374 TPQ{M(Oxidation (M))|F}PD 4.3312 - 813 + NaN NaN 231889.5 NaN 14165 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17656 74.095 NaN 495260 35 0 36731 0.261 + 143 AEFKEAFSLF 10 97 594.8003164292935 1187.586079925387 2 594.8013305664062 MULTI HCD FTMS 0 0 0 17652 150718.375 0.29752604901635105 4 -0.1007232666015625 4 Unmodified _AEFKEAFSLF_ ENSG00000143933|ENST00000272298|CALM2;ENSG00000160014|ENST00000291295|CALM3;ENSG00000198668|ENST00000356978|CALM1;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF 40.72490554402381 0.1391161235525472 1 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}K{[CP]|[EA]}{M(Oxidation (M))|F}S 8 4 43.822 0 0 3.69 0 0 0 275.14684700438767 275.14684700438767 34.1292603010276 0 0 0 0 1.3851518780601921 1.6989700043360187 0.3807196863200844 0 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}K{[CP]|[EA]}{M(Oxidation (M))|F}S 3.69 - 942 NaN NaN 159645.9 NaN 14166 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17657 74.098 NaN 430270 35 0 57076 0.261 + -1 FFTCWFCV 8 77 555.2329192952765 1108.4512856573529 2 555.2330932617188 MULTI HCD FTMS 0 0 0 17652 181264.21875 0.5402640734038335 -1 0.01601409912109375 5 Carbamidomethyl (C) _FFTCWFC(Carbamidomethyl (C))V_ REV__ENST00000420940.6_1_3:39137751-39138060:+|nuORF 18.13498045792455 0.4603629008820478 1 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 60.393 0 0 5.4484 0 0 299.0915699689469 0 299.0915699689469 0 39.96031023282015 0 0 0 1.9916440611282624 0 0 0 S{I|L}EAD{M(Oxidation (M))|F}E 5.4484 - 314 NaN NaN 161080.9 NaN 14167 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17658 74.102 NaN 747700 35 0 64774 0.261 + 22696 QYAHLEWLL 9 95 586.8090565541842 1171.6035601751682 2 586.8097534179688 MULTI HCD FTMS 0 0 0 17652 147023.921875 0.14737553226206498 -5 0.120025634765625 6 Unmodified _QYAHLEWLL_ ENSG00000119720|ENST00000354366|NRDE2 52.268347100219714 0.028397529699942435 1 [YT]V[KC]{M(Oxidation (M))|F}GE{I|L} 9 7 62.039 0 0 5.2953 0 0 0 128.06995621105685 128.06995621105685 36.008629895458654 0 0 0 0 1.2134679910804405 2 0.8494850021680094 1.110924374808178 [YT]V[KC]{M(Oxidation (M))|F}GE{I|L} 5.2953 - 1506 NaN NaN 200120.6 NaN 14168 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17659 74.105 NaN 372400 35 0 75029 0.261 -1 TMMYMWDM 8 75 570.6976327749716 1139.380712616743 2 570.6967163085938 MULTI HCD FTMS 0 0 0 17652 59218.0390625 0.4425353375715261 -1 0.01601409912109375 7 2 Oxidation (M) _TMM(Oxidation (M))YM(Oxidation (M))WDM_ ENST00000285667.3_1_21:15753633-15753711:-|nuORF 2.577480529830294 0.5381683276125971 1 NAG{M(Oxidation (M))|F} 4 -1 25.918 0 0 2.2747 0 0 732.2085457239681 0 732.2085457239681 0 9.006375246153908 0 0 0 0 0 0 0 NAG{M(Oxidation (M))|F} 2.2747 - 98 + NaN NaN 147474.7 NaN 14169 3488 17652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17661 74.11 NaN 1216400 35 0 310030 0.327 + 18693 MYPYIFHVL 9 88 599.8021355882393 1197.5897182432784 2 599.8020629882812 MULTI HCD FTMS 0 0 0 17660 686432.9375 0.5307777252618627 -9 0.23773193359375 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 109.15424536547461 0.003080475237576971 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 70.13 0 0 5.8559 5.8559 90.612 0 0 0 5.6424927368725974 48.95873464120562 5.6424927368725974 18.79493455131808 0 2.6307196863200843 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};YY{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}HV{I|L};[Y{M(Oxidation (M))|F}]YP{I|L}{M(Oxidation (M))|F}HV{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}{[WN]|[YH]}{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L} 5.8559;4.2865;4.0825;0.79207;0.33808;0.33808 +;-;-;-;-;- + 1007 NaN NaN 285580.8 NaN 14170 3489 17660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17662 74.114 NaN 1131000 35 0 216430 0.263 + 26127 SPLVEPTVL 9 70 477.7790842103957 953.5436154875914 2 477.7790222167969 MULTI HCD FTMS 0 0 0 17660 433664.375 0.3663931693363204 6 -0.16989898681640625 2 Unmodified _SPLVEPTVL_ KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant 30.224811164608877 0.11021837014094292 1 [PS]K{M(Oxidation (M))|F} 4 7 28.162 0 0 2.9534 0 0 0 491.30595004253206 491.30595004253206 3.750612633917001 0 0 0 0 0 1.3979400086720375 0.25 0 [PS]K{M(Oxidation (M))|F} 2.9534 - 148 NaN NaN 258462.6 NaN 14171 3489 17660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17663 74.118 NaN 401040 35 0 65440 0.261 -1 MYIFFCMLF 9 60 410.85158680118025 1229.5329310037407 3 410.85198974609375 MULTI HCD FTMS 0 0 0 17660 338431.96875 0.6658110987421375 6 -0.16989898681640625 3 Oxidation (M) _MYIFFCM(Oxidation (M))LF_ ENST00000440205.5_1_21:26796964-26797018:-|nuORF 2.9952420565917617 0.3283108881486655 1 YY 2 -1 27.167 0 0 2.2095 0 0 0 900.3872110440518 900.3872110440518 13.672137691284405 0 0 0 0 0 1.3979400086720375 0 0 YY 2.2095 - 39 + NaN NaN 136220.4 NaN 14172 3489 17660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17664 74.121 NaN 312930 35 0 34286 0.261 + 34626 YPQENIIDTF 10 57 620.298572345272 1238.5825917573438 2 620.2979736328125 MULTI HCD FTMS 0 0 0 17660 185610.953125 0.7819213604039021 -2 0.0419921875 4 Unmodified _YPQENIIDTF_ ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1 49.52724829834842 0.07950882623896251 1 {[{M(Oxidation (M))|F}D]|MM}T[PG]N{I|L}{I|L}DT{M(Oxidation (M))|F} 11 5 + 57.823 0 0 4.6685 4.6685 81.648 0 0 0 1.7609125905568135 12.323511931494885 1.7609125905568135 1.7609125905568135 0 1.4247425010840047 0 0 0.7614393726401688 {[{M(Oxidation (M))|F}D]|MM}T[PG]N{I|L}{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[PG]N{I|L}{I|L}DT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]S[PG]N{I|L}{I|L}DT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D[PG]N{I|L}{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}[HM]{I|L}DT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}T[PG]GG{I|L}{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[PG]GG{I|L}{I|L}DT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]S[PG]GG{I|L}{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{I|L}[HM]DT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D[PG]GG{I|L}{I|L}DT{M(Oxidation (M))|F} 4.6685;4.5263;4.4254;4.2292;4.188;3.3167;3.1745;3.0737;2.9435;2.8774 -;-;-;-;-;-;-;-;-;- 753 NaN NaN 142722 NaN 14173 3489 17660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17665 74.124 NaN 256650 35 0 48026 0.261 + -1 DYEMESCTF 9 65 570.6976327749716 1139.380712616743 2 571.19970703125 MULTI HCD FTMS 0 0 0 17660 26650.53125 0.29054428868106746 2 -0.05188751220703125 5 Oxidation (M) _DYEM(Oxidation (M))ESCTF_ REV__ENSG00000196159|ENST00000394329|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4;REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7|FAT4 2.0597508629832335 0.3354026079994024 1 CGAG{M(Oxidation (M))|F} 5 -1 24.157 0 0 2.1202 0 0 686.22218708139 0 686.22218708139 0 18.672137691284405 0 0 0 0 0 0 0 CGAG{M(Oxidation (M))|F} 2.1202 - 65 + NaN NaN 120530.8 NaN 14174 3489 17660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17667 74.129 NaN 17341000 35 0 2605100 0.327 + 35582 YYIFIPSKF 9 72 589.318302735094 1176.622052536988 2 589.3189697265625 MULTI HCD FTMS 0 0 0 17666 10658707 0.30774711944358113 6 -0.16916656494140625 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 126.56589448801843 0.0008132384440316759 1 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 105.8 0 0 8.9917 8.9917 95.166 0 0 0 14.686427890645248 14.686427890645248 14.686427890645248 14.686427890645248 0 2.6989700043360187 2 1.622363747448347 0.2742275032520141 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F} 8.9917;7.7435;6.4226;6.0394;5.9868;5.8703;5.5793;5.1115;4.9873;4.706 +;-;-;-;-;-;-;-;-;- + 1455 + NaN NaN 562825.3 NaN 14175 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17668 74.134 NaN 5678000 35 0 2662600 0.241 + 17272 LYPQFMFHL 9 87 606.2992527843624 1210.5839526355246 2 606.2996826171875 MULTI HCD FTMS 0 0 0 17666 2690108 0.23822755893504335 -4 0.0874176025390625 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 88.197 0 0 7.2855 7.2855 91.941 0 0 0 69.67048211768838 6.618318436887591 6.618318436887591 12.26280941356464 0 2.4049471895720984 2 0 0.3054621874040891 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}Y{[DS]|[MA]|[CV]|TT}[WM]{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{[WN]|[YH]}M{I|L};{I|L}Y{I|L}[YT]{[C(Carbamidomethyl (C))E]|[WC]}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{[WN]|[YH]}M{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}H{I|L} 7.2855;6.2725;5.6817;4.648;4.3805;4.272;4.2201;4.1299;3.1864;2.9407 +;-;+;-;-;-;-;-;-;- + 896 + NaN NaN 829677.7 NaN 14176 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17669 74.137 NaN 1680700 35 0 171780 0.261 + 22092 QHYVFEAKE 9 112 575.7790029674118 1149.5434530016234 2 575.7929077148438 MULTI HCD FTMS 0 0 0 17666 249137.953125 0.27595247979840043 18 -0.4956207275390625 3 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 29.081581746732265 0.1154664336125038 1 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 7 53.684 0 0 4.67 0 0 0 128.04342348593767 128.04342348593767 3.8425325274351323 0 0 0 0 0 1.0969100130080565 1.360924374808178 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.67 - 8845 NaN NaN 348616.2 NaN 14177 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17670 74.14 NaN 191990 35 0 53595 0.262 + -1 MMFAPPLF 8 39 485.2319063785871 968.4492598239742 2 485.2317199707031 MULTI HCD FTMS 0 0 0 17666 108971 0.4016491810246277 1 -0.0324554443359375 4 Oxidation (M) _M(Oxidation (M))MFAPPLF_ REV__ENST00000517490.5_1_8:87570634-87570742:+|nuORF 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6815 0 0 690.2866608125171 0 690.2866608125171 0 9.771212547196626 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6815 - 9 NaN NaN 126760.5 NaN 14178 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17671 74.143 NaN 554860 35 0 95473 0.261 + 31782 VYLSMSYYF 9 96 594.768078945319 1187.5216049574378 2 594.7670288085938 MULTI HCD FTMS 0 0 0 17666 145909.890625 0.5482572980454979 1 -0.0324554443359375 5 Oxidation (M) _VYLSM(Oxidation (M))SYYF_ ENSG00000167996|ENST00000273550|FTH1;ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF 64.23631603340823 0.01165516075559909 1 [YV][PS]YSYY{M(Oxidation (M))|F} 9 2 + 51.787 0 0 4.3609 4.3609 88.263 0 0 0 9.215409502741743 20.954387282529794 9.215409502741743 19.92937678654197 0 1.079689690656103 1.3010299956639813 0.6307196863200843 0 [YV][PS]YSYY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[VA]|[{I|L}G]}YSYY{M(Oxidation (M))|F} 4.3609;2.6827 -;- 559 NaN NaN 186939.4 NaN 14179 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17672 74.147 NaN 208520 35 0 26149 0.261 -1 QYSMEYFQF 9 55 629.7582471362854 1257.5019413393707 2 629.7581176757812 MULTI HCD FTMS 0 0 0 17666 121886.8125 0.5946101526704174 1 -0.0324554443359375 6 Oxidation (M) _QYSM(Oxidation (M))EYFQF_ ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 28.494509381512117 0.11816142465008336 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}C]|[YS]}EY{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 -1 + 49.248 0 0 3.9163 3.9163 84.678 0 0 0 1.5398434942549954 41.800442355934905 1.5398434942549954 9.208187539523749 0 1.2134679910804405 0 0 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}C]|[YS]}EY{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}C]|[YS]}EY{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F} 3.9163;3.1841 -;- 80 NaN NaN 123750.6 NaN 14180 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17673 74.15 NaN 289300 35 0 19064 0.261 + 1203 AYLKFLDQF 9 98 572.8059954988838 1143.5974380645675 2 572.805908203125 MULTI HCD FTMS 0 0 0 17666 30554.64453125 0.029275627146046465 14 -0.39174652099609375 7 Unmodified _AYLKFLDQF_ ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2 61.60191391372663 0.015340508911304802 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}{[MG]|[TS]}K 7 6 40.45 0 0 3.5371 0 0 0 344.16479581286757 344.16479581286757 7.970610189459961 0 0 0 0 1.1989700043360187 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}{[MG]|[TS]}K 3.5371 - 616 NaN NaN 130743.7 NaN 14181 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17674 74.153 NaN 115020 35 0 52112 0.263 + 12511 KRNQHLFRKK 10 32 452.2777099609375 NaN 0 452.2777099609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KRNQHLFRKK_ ENST00000342992.10_3_2:179542611-179544107:-|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98363.8 NaN 14182 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17675 74.157 NaN 210750 35 0 23199 0.261 -1 DVWSMGVVL 9 51 511.2549282412626 1020.4953035493252 2 511.7563781738281 MULTI HCD FTMS 0 0 0 17666 15425.2626953125 0.0361273730416366 43 -1.1506271362304688 9 Oxidation (M) _DVWSM(Oxidation (M))GVVL_ ENSG00000162526|ENST00000373534|TSSK3;ENSG00000178093|ENST00000585580|TSSK6 3.944395688203298 0.32111559684428237 1 V{I|L} 2 -1 20.969 0 0 2.0548 0 0 790.3354969709 0 790.3354969709 0 17.870156338638594 0 0 0 0 0 0 0 V{I|L} 2.0548 + + 3 NaN NaN 117419 NaN 14183 3490 17666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17677 74.162 NaN 775010 35 0 295210 0.327 + -1 GTQGTCTGMRC 11 77 565.7235751266332 1129.4325973200664 2 565.7236938476562 MULTI HCD FTMS 0 0 0 17676 152029.6875 0.33302834514495133 2 -0.05567169189453125 1 Oxidation (M) _GTQGTCTGM(Oxidation (M))RC_ REV__ENST00000243077.7_1_12:57592080-57592285:+|nuORF 2.0860074813731053 0.4097721463192591 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.5901 0 0 863.3059016186977 0 863.3059016186977 0 1.76091259055681 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5901 - 39 + NaN NaN 211988.7 NaN 14184 3491 17676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17678 74.166 NaN 832610 35 0 74832 0.261 + 28926 TWTEVSYTF 9 92 567.2613992812029 1132.5082456292057 2 567.2611694335938 MULTI HCD FTMS 0 0 0 17676 221876.40625 0.3073274360890676 7 -0.19908905029296875 2 Unmodified _TWTEVSYTF_ ENSG00000116663|ENST00000376753|FBXO6 100.37149154755038 0.004254194004462789 1 [YE][QP]VSYT{M(Oxidation (M))|F} 9 4 + 70.741 0 0 6.2464 6.2464 85.388 0 0 0 4.100971678920047 4.100971678920047 4.100971678920047 4.100971678920047 0 1.8807196863200843 1.2218487496163564 0.6861818737241735 0 [YE][QP]VSYT{M(Oxidation (M))|F};[YT]S{[HG]|PP}ASYT{M(Oxidation (M))|F};[YT]{[HG]|PP}SASYT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}T{[HG]|PP}ASYT{M(Oxidation (M))|F};[YT]S{[HG]|PP}ASY{M(Oxidation (M))|F}T;[YT]{[HG]|PP}SASY{M(Oxidation (M))|F}T;{[{M(Oxidation (M))|F}C]|[YS]}T{[HG]|PP}ASY{M(Oxidation (M))|F}T;N[C(Carbamidomethyl (C))R]SV[QP]SW;{[RE]|[WV]}[SG]HHYT{M(Oxidation (M))|F};[YQ]{[QD]|[EN]|[WG]|[KD]|[RS]}APHQ{M(Oxidation (M))|F} 6.2464;5.8843;5.7288;4.9157;4.6904;4.5349;3.7218;2.773;2.5433;2.44 -;-;-;-;-;-;-;-;-;- 1945 + NaN NaN 214585 NaN 14185 3491 17676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17679 74.17 NaN 569710 35 0 58426 0.261 + 19758 NYAWVYYHL 9 97 614.7929287250602 1227.5713045169202 2 614.7928466796875 MULTI HCD FTMS 0 0 0 17676 136199.9375 0.0024273655525802193 180 -4.187705993652344 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 108.04 0 0 8.8012 8.8012 95.983 0 0 0 22.041652122422803 16.478174818886373 16.478174818886373 22.041652122422803 0 2.774227503252014 1.6989700043360187 0 1.8695063820031512 + + [YN]AWVYYH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYR[SG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWVYYH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]AGEV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]AG{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWVYR[SG]{I|L};[YN]A[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 8.8012;7.0057;6.4697;6.1693;5.0428;4.8871;4.5159;4.425;4.4052;4.2089 +;-;-;-;-;-;-;-;-;- + 3033 NaN NaN 179169.7 NaN 14186 3491 17676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17680 74.173 NaN 330140 35 0 87130 0.264 -1 0 47 425.7418746033724 849.4691962735449 2 425.7420654296875 MULTI HCD FTMS 0 0 0 17676 133015.921875 0.36271908068536496 2 -0.05567169189453125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7192 0 0 684.3906878280355 0 684.3906878280355 0 9.655593552960937 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7192 - 14 + NaN NaN 136287.9 NaN 14187 3491 17676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17681 74.176 NaN 63640 35 0 5749.2 0.261 + 3550 EISDADTKEVF 11 41 627.297119140625 NaN 0 627.297119140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EISDADTKEVF_ ENSG00000166851|ENST00000300093|PLK1 2.0860074813731053 0.3362027409827022 1 YW{M(Oxidation (M))|F}M 4 11 13.487 0 0 1.0776 0 0 165.07598713388285 456.27631555728755 621.3523026911704 0 0 0 0 0 0 0 0 0 YW{M(Oxidation (M))|F}M 1.0776 - 18 + NaN NaN 83616.4 NaN 14188 3491 17676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17682 74.18 NaN 104050 35 0 13524 0.263 -1 0 49 488.77005466890915 975.5255564046183 2 489.2711486816406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 {I|L}P{I|L} 3 -1 30.445 0 0 3.1209 0 0 0 649.2829378245419 649.2829378245419 29.960762528683702 0 0 0 0 0.4247425010840047 0 0 0 {I|L}P{I|L} 3.1209 - 5 + NaN NaN 96655.4 NaN 14189 3491 17676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17684 74.184 NaN 2952500 35 0 495800 0.327 + 5217 FFDAELSQM 9 94 544.2418377696521 1086.469122606104 2 544.2418823242188 MULTI HCD FTMS 0 0 0 17683 1177545.5 0.5010485445155388 3 -0.09515380859375 1 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 85.966 0 0 7.9124 7.9124 86.697 0 0 0 0.6345702811492657 4.529638007181816 0.6345702811492657 0.6345702811492657 0 2.6307196863200843 0 1.5044321917401078 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;[YN]S{I|L}EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{[QS]|[NT]}[YV]EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQM;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D{I|L}{[CP]|[EA]}SQM;[YN]S{[CP]|[EA]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{[QS]|[NT]}{I|L}M{M(Oxidation (M))|F}AD[{M(Oxidation (M))|F}E];{[QS]|[NT]}M{I|L}{M(Oxidation (M))|F}AD[{M(Oxidation (M))|F}E];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]M 7.9124;7.854;7.0649;5.1919;5.1423;5.0073;4.5247;4.5197;4.3396;4.2948 +;-;-;-;-;-;-;-;-;- + 2288 NaN NaN 526832.2 NaN 14190 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17685 74.189 NaN 1915200 35 0 192180 0.261 + 35962 YYVRAWVVF 9 98 601.8239457638567 1201.6333385945134 2 601.8218994140625 MULTI HCD FTMS 0 0 0 17683 638263.125 0.44640641049503843 -2 0.0553131103515625 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 74.42276476219924 0.007657080072768255 1 YYVRAWVV{M(Oxidation (M))|F} 9 0 + 76.465 0 0 6.3634 6.3634 86.402 0 0 0 14.404238951808757 6.020599913279625 6.020599913279625 6.020599913279625 0 2.394599018282542 1.5228787452803376 0 0 + + YYVRAWVV{M(Oxidation (M))|F};YYVRAWV{M(Oxidation (M))|F}V;VVMH{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VV{M(Oxidation (M))|F};VVMH[VS]WVV{M(Oxidation (M))|F};YYV[TP][KS]VV{M(Oxidation (M))|F};YYVRVVAW{M(Oxidation (M))|F};VVMH{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V{M(Oxidation (M))|F}V;YYV[VG]V{[SA]|[TG]}VV{M(Oxidation (M))|F};VVMH{I|L}TVAW{M(Oxidation (M))|F};VVMH[VS]WV{M(Oxidation (M))|F}V 6.3634;5.8624;5.0848;4.9786;4.7613;4.5928;4.5838;4.5436;4.5179;4.4776 +;-;-;-;-;-;-;-;-;- + 2845 NaN NaN 383724.8 NaN 14191 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17686 74.192 NaN 798320 35 0 276610 0.261 + 24016 RWFQPAIPSW 10 65 644.3355893304046 1286.656625727609 2 644.335693359375 MULTI HCD FTMS 0 0 0 17683 252147.65625 0.3353542136995265 3 -0.09515380859375 3 Unmodified _RWFQPAIPSW_ ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF;nc|ENSG00000092929|Q70J99-3|UNC13D 36.506200033944 0.17572556831573002 1 W[WM][PA]{I|L}PSW 9 3 56.616 0 0 4.4003 0 0 114.09878840999734 0 114.09878840999734 0 49.16895006820745 0 0 0 2 0 0.7742275032520141 0 W[WM][PA]{I|L}PSW 4.4003 - 233 + NaN NaN 200544.9 NaN 14192 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17687 74.196 NaN 1736800 35 0 104860 0.261 + 11874 KFDFPVSYL 9 104 558.2921585876587 1114.5697642421173 2 558.292236328125 MULTI HCD FTMS 0 0 0 17683 285573.3125 0.4891610867765034 3 -0.09515380859375 4 Unmodified _KFDFPVSYL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 70.33199760932243 0.0089807860198535 1 [YV]Q{M(Oxidation (M))|F}PVSY{I|L} 9 3 + 61.014 0 0 5.4742 5.4742 82.678 0 0 0 9.647864282705534 16.478174818886373 9.647864282705534 1.211375162600703 0 1.610924374808178 1.2218487496163564 0.7614393726401688 0 [YV]Q{M(Oxidation (M))|F}PVSY{I|L};[YV]{M(Oxidation (M))|F}QPVSY{I|L};[YV][AG]{M(Oxidation (M))|F}PVSY{I|L};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}PVSY{I|L};[YV]{M(Oxidation (M))|F}[AG]PVSY{I|L};[YV]{M(Oxidation (M))|F}[EP][KG]Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}P{[MS]|[{M(Oxidation (M))|F}A]}V[VG]Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PV{[MS]|[{M(Oxidation (M))|F}A]}[VG]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{[MS]|[{M(Oxidation (M))|F}A]}V[VG]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SV{[MS]|[{M(Oxidation (M))|F}A]}[VG]Y{I|L} 5.4742;5.3655;4.6481;4.6086;4.5394;3.0762;1.9394;1.7815;1.2751;1.1172 -;-;-;-;-;-;-;-;-;- 4306 NaN NaN 356524 NaN 14193 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17688 74.199 NaN 435760 35 0 73713 0.261 + 3824 EPFKFLEPTL 10 70 610.8312125730683 1219.6478722129366 2 610.8314819335938 MULTI HCD FTMS 0 0 0 17683 84348.0546875 0.33164864461047466 -1 0.022857666015625 5 Unmodified _EPFKFLEPTL_ ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1 43.77239144664712 0.11267038882370725 1 E{[RE]|[WV]}EP[{I|L}T] 7 5 35.278 0 0 2.8925 0 0 347.20392390262117 0 347.20392390262117 0 20.598491495578415 0 0 0 0.7302046884880937 0 1.1989700043360187 0 E{[RE]|[WV]}EP[{I|L}T] 2.8925 - 117 + NaN NaN 145879.5 NaN 14194 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17689 74.202 NaN 147950 35 0 13520 0.264 + 20743 PGAYACPE 8 40 404.16961921983085 806.3246855064617 2 404.16998291015625 MULTI HCD FTMS 0 0 0 17683 43777.3359375 0.004249320405880415 81 -1.8197708129882812 6 Unmodified _PGAYACPE_ REV__ENSG00000053747|ENST00000313654|LAMA3;REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;REV__LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;REV__nc|ENSG00000053747|Q16787-3|LAMA3 2.8892196856762586 0.5377058178582064 1 S 1 -1 5.4846 0 0 0.68019 0 0 373.16603658826057 343.10126672916255 716.267303317423 0 0 0 0 0 0 0 0 0 S 0.68019 - 2 + NaN NaN 111317.3 NaN 14195 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17690 74.206 NaN 186090 35 0 33159 0.261 + 7521 FWVGFVLLW 9 56 583.8233366339339 1165.6321203346677 2 583.8235473632812 MULTI HCD FTMS 0 0 0 17683 41328.38671875 0.1514626648327107 -4 0.1007232666015625 7 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 9.347437153973935 0.2795965555214564 1 {I|L}W 2 7 30.969 0 0 2.6569 0 0 848.4581834223615 0 848.4581834223615 0 26.365006360318688 0 0 0 1 0 0 0 + {I|L}W 2.6569 + + 63 + NaN NaN 119498.9 NaN 14196 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17691 74.209 NaN 257560 35 0 25730 0.261 + -1 LWSLMNLRI 9 75 581.3274326171659 1160.6403123011316 2 581.3246459960938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _LWSLM(Oxidation (M))NLRI_ REV__ENSG00000249437|ENST00000517649|NAIP;REV__ENST00000315147.8_1_5:70265933-70281744:-|nuORF;REV__ENST00000511830.2_1_5:69390488-69422514:-|nuORF;REV__nc|ENSG00000249437|Q13075-2|NAIP 10.799506525563784 0.2670509983294061 1 YD{M(Oxidation (M))|F} 3 -1 25.203 0 0 2.1715 0 0 717.4708004376536 0 717.4708004376536 0 0.33083067248227493 0 0 0 0 0 0.25 0 YD{M(Oxidation (M))|F} 2.1715 - 155 + NaN NaN 120429.6 NaN 14197 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17692 74.212 NaN 3189500 35 0 329670 0.262 + 21213 PQRCMTSI 8 95 468.22565515388004 934.4367573745601 2 468.22601318359375 MULTI HCD FTMS 0 0 0 17683 35804.9453125 0.3808457806737988 -1 0.022857666015625 9 Unmodified _PQRCMTSI_ REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF 42.09456458481378 0.20402248593209013 1 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H 7 -1 + 82.885 0 0 8.87 8.87 95.637 0 0 0 39.26111668977859 13.934625873455744 13.934625873455744 18.50833760139686 0 1.7302046884880937 1.6989700043360187 0 0.28872548999643577 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;P{[CA]|SS}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}QP{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AGP{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}QP;{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}P;[QP]{M(Oxidation (M))|F}{[NV]|[RG]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 8.87;6.8893;5.7443;4.3883;3.7573;3.6105;2.8648;2.7902;2.7649;2.7561 -;-;-;-;-;-;-;-;-;- 1129 + NaN NaN 570475.4 NaN 14198 3492 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17694 74.217 NaN 6052100 35 0 1162000 0.327 + 28496 TPQFPDMIL 9 79 539.2679605796511 1076.5213682261021 2 539.268310546875 MULTI HCD FTMS 0 0 0 17693 5600709.5 0.776024423382977 4 -0.1072235107421875 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 114.20165948288297 0.0022564706844261533 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 92.889 0 0 8.6286 8.6286 88.207 0 0 0 1.365006360318688 16.478174818886373 1.365006360318688 1.365006360318688 0 1.9247425010840047 0 1.7689301784845295 0.6109243748081782 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};[TP]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{I|L}[C(Carbamidomethyl (C))S]{I|L}{I|L} 8.6286;8.5018;7.3367;7.079;7.0571;5.9906;2.9883;2.5124;2.3856;1.9895 -;+;-;-;-;-;-;-;-;- + 1463 NaN NaN 610960.5 NaN 14199 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17695 74.222 NaN 408580 35 0 42410 0.261 + 18678 MYLKQILYL 9 85 592.8406974133107 1183.6668418934214 2 592.841064453125 MULTI HCD FTMS 0 0 0 17693 158361.046875 1 0 0 2 Unmodified _MYLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 42.09456458481378 0.05572955244001856 1 [Y{I|L}]MG[KA]{I|L}{I|L}Y{I|L} 10 4 + 63.338 0 0 5.351 5.351 82.407 0 0 0 0.9691001300805624 16.53212513775344 0.9691001300805624 0.9691001300805624 0 1.3494850021680094 1.2218487496163564 0 0 [Y{I|L}]MG[KA]{I|L}{I|L}Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}G[KA]{I|L}{I|L}Y{I|L};[Y{I|L}]M[KQ]{I|L}{I|L}Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[KQ]{I|L}{I|L}Y{I|L};[Y{I|L}]MG[KA]{I|L}Y{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}G[KA]{I|L}Y{I|L}{I|L};[Y{I|L}]M[KQ]{I|L}Y{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[KQ]{I|L}Y{I|L}{I|L};[YV]{[DS]|[MA]|[CV]|TT}[KA]{I|L}{I|L}Y{I|L};[Y{I|L}][Q{I|L}][K{I|L}]MY{I|L} 5.351;5.2691;5.2022;5.1204;4.4199;4.3381;4.2712;4.1893;2.3758;2.0556 -;-;-;+;-;-;-;-;-;- + 601 NaN NaN 144760.6 NaN 14200 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17696 74.225 NaN 1177600 35 0 62054 0.261 + 16758 LYDIILKNF 9 102 569.8289992892563 1137.6434456453126 2 569.8289184570312 MULTI HCD FTMS 0 0 0 17693 429805.53125 0.16442472458113216 -6 0.1495513916015625 3 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 163.03601447609117 7.615514112917802E-09 1 {I|L}YD{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 9 0 + 128.03 0 0 11.254 11.254 96.029 0 0 0 104.17550797876801 16.478174818886373 16.478174818886373 12.703037561203843 0 3.079689690656103 1.6989700043360187 0 1.5911290632962718 + + {I|L}YD{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};{I|L}YD{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}NK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}GGK{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}{I|L}{I|L}[VG]N{M(Oxidation (M))|F};[Y{I|L}]N{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E;{[TV]|[{I|L}S]}[Y{I|L}]{I|L}{I|L}[VG]N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 11.254;10.138;9.409;8.8147;8.5996;8.0053;4.006;2.42;1.6536;0.90425 +;-;+;-;-;-;-;-;-;- + 1705 + NaN NaN 268587.3 NaN 14201 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17697 74.229 NaN 362110 35 0 101270 0.261 + 21337 PSVHPSPLLL 10 51 530.3136877811668 1058.6128226291335 2 530.313720703125 MULTI HCD FTMS 0 0 0 17693 173040.046875 0.15879932078527823 9 -0.25457763671875 4 Unmodified _PSVHPSPLLL_ REV__ENST00000536693.1_2_17:65989185-65989404:-|nuORF;REV__ENST00000570002.2_1_17:44344573-44344858:+|nuORF 14.838274106304384 0.3723198072575719 1 {I|L}{I|L}{I|L} 3 -1 36.198 0 0 3.4194 0 0 701.35161025215 0 701.35161025215 0 27.971062485323515 0 0 0 1 0 0 0 {I|L}{I|L}{I|L} 3.4194 + + 14 NaN NaN 128760.1 NaN 14202 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17698 74.232 NaN 494540 35 0 93154 0.261 -1 VYLSMSYYF 9 84 594.768078945319 1187.5216049574378 2 594.7683715820312 MULTI HCD FTMS 0 0 0 17693 86516.59375 0.3250866251924107 4 -0.1072235107421875 5 Oxidation (M) _VYLSM(Oxidation (M))SYYF_ ENSG00000167996|ENST00000273550|FTH1;ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 -1 27.435 0 0 2.3103 0 0 712.3517933576187 0 712.3517933576187 0 8.961512838049245 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 2.3103 - 446 NaN NaN 172472.7 NaN 14203 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17699 74.235 NaN 490340 35 0 80487 0.261 + 19391 NPFHLELAL 9 69 527.2900782306192 1052.5656035280383 2 527.2894287109375 MULTI HCD FTMS 0 0 0 17693 257982.625 0.6809849771492541 -3 0.08812713623046875 6 Unmodified _NPFHLELAL_ ENSG00000155561|ENST00000285968|NUP205 49.93300154707207 0.03166451819912738 1 DN{I|L}A{I|L} 5 6 50.235 0 0 4.7726 0 0 508.2723561017594 0 508.2723561017594 0 25.7711470149615 0 0 0 1 0 0 1.1307196863200843 DN{I|L}A{I|L} 4.7726 - 447 NaN NaN 153178.2 NaN 14204 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17700 74.238 NaN 171170 35 0 11922 0.261 + 6554 FPLDKSLLL 9 54 523.31823406965 1044.6219152060999 2 523.8194580078125 MULTI HCD FTMS 0 0 0 17693 53357.61328125 0.38386703103951253 9 -0.25457763671875 7 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 34.93206674587334 0.08860942999206235 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DT{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L} 9 2 + 42.774 0 0 4.0947 4.0947 81.098 0 0 0 11.57606548583972 16.347278033036346 11.57606548583972 2.430380486862944 0 1 2 0.28872548999643577 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DT{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{[TV]|[{I|L}S]}{I|L}{I|L} 4.0947;3.862 -;+ + 83 NaN NaN 139162.1 NaN 14205 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17701 74.242 NaN 327260 35 0 24445 0.262 -1 YLCMTDEWF 9 70 422.17226051545055 1263.4949521465517 3 422.17242431640625 MULTI HCD FTMS 0 0 0 17693 136009.75 0.9068725153041999 -1 0.03281402587890625 8 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))MTDEWF_ ENSG00000108578|ENST00000261714|BLMH;ENST00000578795.1_1_17:28576037-28576226:-|nuORF 5.731851221503515 0.3075653528928475 1 K{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6596 0 0 0 985.3303420866686 985.3303420866686 2.552725051033061 0 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 1.6596 - 26 + NaN NaN 148857.8 NaN 14206 3493 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17703 74.247 NaN 1842600 35 0 181220 0.327 + 22697 QYAHLEWLL 9 112 586.8090565541842 1171.6035601751682 2 586.8092651367188 MULTI HCD FTMS 0 0 0 17702 845673.25 0.8476956929805091 1 -0.03290557861328125 1 Unmodified _QYAHLEWLL_ ENSG00000119720|ENST00000354366|NRDE2 107.1870275148908 0.00340162908551068 1 [W{I|L}]E{[QG]|[NA]}QW{I|L}{I|L} 9 6 + 65.54 0 0 5.5941 5.5941 84.392 0 0 0 2.3425679682373755 32.12726809515076 2.3425679682373755 4.301885969776805 0 0.8807196863200843 1.3010299956639813 1.4698565171985376 1.0484550065040281 [W{I|L}]E{[QG]|[NA]}QW{I|L}{I|L};[YQ]AH{I|L}EW{I|L}{I|L};[W{I|L}]E{[QG]|[NA]}[AG]W{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}W[PS]EW{I|L}{I|L};[W{I|L}][WQ]Q{[DA]|[EG]}{I|L}{I|L};[W{I|L}]E{[QG]|[NA]}Q{I|L}W{I|L};[Q{I|L}][HT]D{M(Oxidation (M))|F}W{I|L}{I|L};[W{I|L}]E{[QG]|[NA]}WQ{I|L}{I|L};[YQ]AH{I|L}E{I|L}W{I|L};{[QN]|[E{I|L}]|[KN]}W{I|L}{[CP]|[EA]}W{I|L}{I|L} 5.5941;5.2269;4.8081;4.6948;4.498;4.3062;4.2047;4.0992;3.939;3.887 -;+;-;-;-;-;-;-;-;- + 3167 NaN NaN 370698.4 NaN 14207 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17704 74.251 NaN 914180 35 0 309360 0.264 -1 0 56 413.1934236862167 824.3722944392334 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17702 477464.25 0.35998156605590875 46 -1.216033935546875 2 NaN NaN 1 [Y{I|L}][HM]D{M(Oxidation (M))|F} 6 -1 [Y{I|L}][HM]D + + 12.764 10.035 1.522 1.5484 1.5484 58.856 0 0 0 0 1.0817721953646853 0 0 0 0 0 0 0 [Y{I|L}][HM]D{M(Oxidation (M))|F} 1.5484 - 7 + NaN NaN 228838.9 NaN 14208 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17705 74.255 NaN 1060100 35 0 126250 0.261 + 1193 AYLKAIVLF 9 92 519.3233459979147 1036.6321390626292 2 519.3233642578125 MULTI HCD FTMS 0 0 0 17702 315831.875 0.040063391571820116 19 -0.5092086791992188 3 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 74.42276476219924 0.007657080072768255 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 71.481 0 0 6.8955 6.8955 85.781 0 0 0 21.12704280191288 57.77651625259168 21.12704280191288 2.3459165064184617 0 2.610924374808178 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AK{I|L}V{I|L}{M(Oxidation (M))|F};VV[YG]K{I|L}V{I|L}{M(Oxidation (M))|F} 6.8955;6.6692;3.8217 +;-;- + 936 NaN NaN 242907.7 NaN 14209 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17706 74.258 NaN 1193800 35 0 47483 0.261 -1 MLCRMFLL 8 130 550.278693942284 NaN 0 550.25927734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LC(Carbamidomethyl (C))RMFLL_ nc|ENSG00000138448|P06756-3|ITGAV 14.581692164780916 0.38795613832665576 1 Q{M(Oxidation (M))|F}PS 4 -1 12.233 0 0 1.1136 0 0 198.1402066416892 438.17261181178327 636.3128184534725 0 0 0 0 0 0 0 0 0.2302046884880938 Q{M(Oxidation (M))|F}PS 1.1136 - 497 + NaN NaN 263874.8 NaN 14210 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17707 74.261 NaN 1728700 35 0 104250 0.261 + 27220 SYNNFFRMF 9 110 613.276194093433 1224.537835253666 2 613.2762451171875 MULTI HCD FTMS 0 0 0 17702 958994.8125 0.5554407350507299 -4 0.11756134033203125 5 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 157.7952019732125 5.857147217999733E-07 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9 0 + 96.345 0 0 7.8678 7.8678 91.218 0 0 0 9.890139315225682 16.478174818886373 9.890139315225682 9.208187539523749 0 2.9247425010840047 0 1.1496498648046138 1.6549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[WQ]RE{M(Oxidation (M))|F}NS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];[Y{I|L}][WH]{M(Oxidation (M))|F}NN[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VG]M{M(Oxidation (M))|F} 7.8678;7.1159;7.1159;7.0602;6.3082;5.7097;3.8087;3.6889;3.6821;3.5426 +;-;-;-;-;-;-;-;-;- + 2982 NaN NaN 359522.2 NaN 14211 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17708 74.265 NaN 349210 35 0 46928 0.261 + 35676 YYIYSQTYF 9 77 624.284739077969 1246.554925222738 2 624.28466796875 MULTI HCD FTMS 0 0 0 17702 309280.03125 0.3485988925099515 5 -0.13677215576171875 6 Unmodified _YYIYSQTYF_ ENSG00000121858|ENST00000241261|TNFSF10 92.65332237495696 0.004456439685314431 1 YY{I|L}YSQTY{M(Oxidation (M))|F} 9 0 + 102.31 0 0 8.207 8.207 93.543 0 0 0 21.12704280191288 70.79062363249015 21.12704280191288 12.703037561203843 0 2.1989700043360187 1.3979400086720375 1.1237125054200234 0.3494850021680094 + + YY{I|L}YSQTY{M(Oxidation (M))|F};YY{I|L}YS[AG]TY{M(Oxidation (M))|F};YY{I|L}YS[YT]Q{M(Oxidation (M))|F};YY[KS][{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F};YY{I|L}YS[YT][AG]{M(Oxidation (M))|F};YY{I|L}YS{[NV]|[RG]}YY;[YT]{[QS]|[NT]}[Y{M(Oxidation (M))|F}]{I|L}YY 8.207;7.188;4.9786;4.7596;4.24;3.3752;0.51258 +;-;-;-;-;-;- + 754 NaN NaN 140305.8 NaN 14212 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17709 74.268 NaN 328330 35 0 24460 0.264 -1 0 74 435.250960108541 868.487367283882 2 435.2511291503906 MULTI HCD FTMS 0 0 0 17702 295149.84375 0.7107187136261393 11 -0.29042816162109375 7 NaN NaN 1 V 1 -1 5.0886 0 0 0.58592 0 0 542.2941737797789 224.0979403131469 766.3921140929258 0 0 0 0 0 0.5 0 0 0 V 0.58592 - 9 + NaN NaN 141751 NaN 14213 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17710 74.271 NaN 410840 35 0 30232 0.261 + 11635 IYVHDLLTF 9 93 560.8058039694926 1119.597055005785 2 560.805908203125 MULTI HCD FTMS 0 0 0 17702 153584.453125 0.021144472755803632 35 -0.9455108642578125 8 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 67.34385681178166 0.00994769994983633 1 [Y{I|L}][HD][{I|L}V]{I|L}T{M(Oxidation (M))|F} 9 2 + 54.533 0 0 4.8708 4.8708 88.093 0 0 0 9.778930903698182 23.071720435366654 9.778930903698182 14.030899869919438 0 1.6694451763165201 1.5228787452803376 0.4247425010840047 0 [Y{I|L}][HD][{I|L}V]{I|L}T{M(Oxidation (M))|F};[Y{I|L}][HD][{I|L}V]T{I|L}{M(Oxidation (M))|F};YY[KS][KA]{I|L}T{M(Oxidation (M))|F};[{I|L}P]S{[SA]|[TG]}{[RE]|[WV]}{I|L}T{M(Oxidation (M))|F};[Y{I|L}][HD][{I|L}V]T{M(Oxidation (M))|F}{I|L};[Y{I|L}][HD]VVVY{I|L};YY[KS][KA]T{I|L}{M(Oxidation (M))|F};[{I|L}P]S{[SA]|[TG]}{[RE]|[WV]}T{I|L}{M(Oxidation (M))|F};[{I|L}P]D[{I|L}P]K[YQ]{M(Oxidation (M))|F};[DP]{I|L}[{I|L}P]K[YQ]{M(Oxidation (M))|F} 4.8708;3.6176;3.1968;3.1498;2.3655;2.0394;1.9436;1.8966;1.7341;1.076 -;-;-;-;-;-;-;-;-;- 739 NaN NaN 156829.9 NaN 14214 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17711 74.275 NaN 244070 35 0 27976 0.261 + 5286 FFFGSDFEN 9 76 555.2329192952765 1108.4512856573529 2 555.2328491210938 MULTI HCD FTMS 0 0 0 17702 149639.109375 0.44600437598200426 5 -0.13677215576171875 9 Unmodified _FFFGSDFEN_ ENSG00000132965|ENST00000380490|ALOX5AP 14.838274106304384 0.23215694253501695 1 S{I|L}EAD{M(Oxidation (M))|F}E 7 6 34.786 0 0 3.1383 0 0 299.091600486525 0 299.091600486525 0 16.59842596334329 0 0 0 1.4731975075880328 0 0 0 S{I|L}EAD{M(Oxidation (M))|F}E 3.1383 - 147 NaN NaN 116508.2 NaN 14215 3494 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17713 74.28 NaN 13591000 35 0 6569200 0.327 + 17273 LYPQFMFHL 9 58 606.2992527843624 1210.5839526355246 2 606.3002319335938 MULTI HCD FTMS 0 0 0 17712 7038339 0.6232933097583123 1 -0.01869964599609375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 104.79918948944588 0.003791450360204016 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 96.322 0 0 7.9567 7.9567 93.814 0 0 0 65.48332479720628 7.147642715192504 7.147642715192504 16.070006276765483 0 2.7856668758921828 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}[HM]Y{I|L};[Y{I|L}]PQS[MT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L}Y{I|L} 7.9567;6.6292;6.4478;5.6872;5.0702;4.0408;3.3981;3.1879;2.7749;2.6932 +;-;+;-;-;-;-;-;-;- + 478 + NaN NaN 746677.6 NaN 14216 3495 17712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17714 74.284 NaN 5214200 35 0 721170 0.215 + 35583 YYIFIPSKF 9 94 589.318302735094 1176.622052536988 2 589.3187255859375 MULTI HCD FTMS 0 0 0 17712 3117599 0.0900139305668304 11 -0.2964019775390625 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 142.0795815696625 1.719916958814042E-05 1 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 111.28 0 0 9.4573 9.4573 96.314 0 0 0 77.52147485733309 14.09256854528806 14.09256854528806 19.055781609639766 0 2.6989700043360187 2 1.1281446971601314 0.5484550065040282 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{I|L}YPSK{M(Oxidation (M))|F} 9.4573;7.8378;6.8947;6.5375;6.0902;5.9211;5.5335;5.4496;5.128;5.0323 +;-;-;-;-;-;-;-;-;- + 4338 + NaN NaN 633774.1 NaN 14217 3495 17712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17715 74.287 NaN 1365200 35 0 135340 0.261 + 22093 QHYVFEAKE 9 114 575.7790029674118 1149.5434530016234 2 575.79296875 MULTI HCD FTMS 0 0 0 17712 148713.046875 0.16471891796807908 23 -0.6156997680664062 3 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 25.399314129420986 0.14091189997036632 1 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 7 54.747 0 0 4.7625 0 0 0 128.04369545185344 128.04369545185344 1.2912794722890766 0 0 0 0 0.3494850021680094 1.0969100130080565 1.3116042352767734 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.7625 - 6433 NaN NaN 291967.2 NaN 14218 3495 17712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17716 74.29 NaN 1627600 35 0 190010 0.261 + 35216 YVLRLEPLL 9 105 558.3449235731425 1114.675294213085 2 558.3449096679688 MULTI HCD FTMS 0 0 0 17712 336274.5625 0.6393231796899248 1 -0.01869964599609375 4 Unmodified _YVLRLEPLL_ ENSG00000165943|ENST00000298894|MOAP1 72.96794272382148 0.008127836904478181 1 [YV]{I|L}R{I|L}EP{I|L}{I|L} 9 0 + 71.67 0 0 6.4297 6.4297 85.93 0 0 0 11.478378918108149 11.478378918108149 11.478378918108149 4.577322709550117 0 2.2619229975844686 1.3979400086720375 0 0 + + [YV]{I|L}R{I|L}EP{I|L}{I|L};[YV]{I|L}R{I|L}E{I|L}P{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KA]K[VP]P{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KA]K[VP]{I|L}P{I|L};[W{I|L}]KRR{M(Oxidation (M))|F}P{I|L} 6.4297;6.0191;2.3439;1.9332;1.6014 +;-;-;-;- + 2492 NaN NaN 324949 NaN 14219 3495 17712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17717 74.293 NaN 196630 35 0 21622 0.261 + 34627 YPQENIIDTF 10 58 620.298572345272 1238.5825917573438 2 620.2982177734375 MULTI HCD FTMS 0 0 0 17712 104191.1875 0.4389251480069304 4 -0.1038665771484375 5 Unmodified _YPQENIIDTF_ ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1 24.990960013464015 0.27735500881591096 1 YW[QT]{I|L}D[{M(Oxidation (M))|F}T] 8 4 42.37 0 0 3.4208 0 0 166.07676770145355 0 166.07676770145355 0 25.358501203795907 0 0 0 1.8252574989159953 0 0.9247425010840047 0 YW[QT]{I|L}D[{M(Oxidation (M))|F}T] 3.4208 - 270 + NaN NaN 114105.7 NaN 14220 3495 17712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17719 74.298 NaN 607940 35 0 259490 0.327 -1 IGFNCSWCS 9 68 565.7235751266332 1129.4325973200664 2 565.7235717773438 MULTI HCD FTMS 0 0 0 17718 174671.140625 0.382625537574198 7 -0.1864166259765625 1 2 Carbamidomethyl (C) _IGFNC(Carbamidomethyl (C))SWC(Carbamidomethyl (C))S_ ENSG00000120594|ENST00000377252|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2 3.944395688203298 0.32111559684428237 1 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.5901 0 0 863.3059016186977 0 863.3059016186977 0 6.9897000433601875 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5901 - 26 + NaN NaN 194036.4 NaN 14221 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17720 74.303 NaN 736400 35 0 65412 0.261 -1 DPACPEIKIQL 11 63 642.3369357901879 1282.6593186471757 2 642.3370971679688 MULTI HCD FTMS 0 0 0 17718 285375.65625 0.278062203212214 -5 0.13671112060546875 2 Carbamidomethyl (C) _DPAC(Carbamidomethyl (C))PEIKIQL_ ENSG00000076864|ENST00000374765|RAP1GAP;ENST00000471600.6_1_1:21924215-21924573:-|nuORF;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP 36.506200033944 0.15945123241780773 1 TAN{I|L}Q{I|L} 6 -1 85.31 0 0 6.651 0 0 624.2983731516849 0 624.2983731516849 0 64.84759407011602 0 0 0 2.2302046884880937 0 1.110924374808178 0.7742275032520141 TAN{I|L}Q{I|L} 6.651 - 499 NaN NaN 190900.6 NaN 14222 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17721 74.306 NaN 131120 35 0 31834 0.264 + -1 MMFAPPLF 8 42 485.2319063785871 968.4492598239742 2 485.23150634765625 MULTI HCD FTMS 0 0 0 17718 57193.609375 0.21080623620331299 7 -0.1864166259765625 3 Oxidation (M) _M(Oxidation (M))MFAPPLF_ REV__ENST00000517490.5_1_8:87570634-87570742:+|nuORF 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6815 0 0 690.2864103473277 0 690.2864103473277 0 25.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6815 - 5 NaN NaN 113825.2 NaN 14223 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17722 74.31 NaN 147780 35 0 7737.6 0.261 + 21139 PPLMIPVF 8 66 457.2642318855019 912.5139108378038 2 457.2642517089844 MULTI HCD FTMS 0 0 0 17718 113589.703125 0.614704682643808 -3 0.0810394287109375 4 Unmodified _PPLMIPVF_ ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-5|SOX5 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.6004 0 0 747.4346547116304 0 747.4346547116304 0 1.5051499783199063 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.6004 + + 28 + NaN NaN 115411.1 NaN 14224 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17723 74.313 NaN 413880 35 0 62289 0.261 + 25484 SFDTGFTSF 9 76 504.7190796702708 1007.4236064073416 2 505.22100830078125 MULTI HCD FTMS 0 0 0 17718 51015.55859375 0.5382589254656317 -3 0.0810394287109375 5 Unmodified _SFDTGFTSF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 85.27202061508552 0.004649858145912257 1 ST[WD]TS{M(Oxidation (M))|F} 7 4 49.455 0 0 4.9091 0 0 165.08080678551113 0 165.08080678551113 0 21.03408749299639 0 0 0 0 0 1.9489700043360187 0 ST[WD]TS{M(Oxidation (M))|F} 4.9091 - 163 + NaN NaN 160473.4 NaN 14225 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17724 74.316 NaN 409110 35 0 54946 0.261 + 26227 SPVPIISEL 9 68 477.7790842103957 953.5436154875914 2 477.7792053222656 MULTI HCD FTMS 0 0 0 17718 41243.07421875 0.03484533558049563 13 -0.34930419921875 6 Unmodified _SPVPIISEL_ REV__ENSG00000112276|ENST00000314641|BVES 11.640296217721598 0.25978676193971967 1 V[Y{M(Oxidation (M))|F}]SK{M(Oxidation (M))|F} 6 -1 33.338 0 0 3.4962 0 0 164.15251548934765 0 164.15251548934765 0 9.770221229218286 0 0 0 0 0 0.7134679910804405 0.3807196863200844 V[Y{M(Oxidation (M))|F}]SK{M(Oxidation (M))|F} 3.4962 - 387 + NaN NaN 147088.8 NaN 14226 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17725 74.32 NaN 243120 35 0 32902 0.261 + 21953 QEIKVADVI 9 65 507.7951251150152 1013.5756972968304 2 507.7955017089844 MULTI HCD FTMS 0 0 0 17718 84466.8203125 0.8934003294220422 3 -0.08516693115234375 7 Unmodified _QEIKVADVI_ REV__ENSG00000048392|ENST00000251810|RRM2B;REV__nc|ENSG00000048392|Q7LG56-2|RRM2B;REV__nc|ENSG00000048392|Q7LG56-3|RRM2B;REV__nc|ENSG00000048392|Q7LG56-6|RRM2B 19.361941925380144 0.1930734562688509 1 ADV{I|L} 4 -1 38.22 0 0 3.7708 0 0 597.3494210175197 0 597.3494210175197 0 16.347659602351143 0 0 0 1.2302046884880937 0 0 0 ADV{I|L} 3.7708 + + 266 NaN NaN 124651.9 NaN 14227 3496 17718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17727 74.324 NaN 1841700 35 0 524780 0.327 + 18694 MYPYIFHVL 9 90 599.8021355882393 1197.5897182432784 2 599.8026123046875 MULTI HCD FTMS 0 0 0 17726 1046050 0.8088481906656344 -1 0.02618408203125 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.664 0 0 6.5685 6.5685 86.861 0 0 0 5.6424927368725974 57.77310937020445 5.6424927368725974 6.0784094103974695 0 2.7059771852360797 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F}HV{I|L};[NS]N[HK]W[NS]V{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}{[WN]|[YH]}{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L};{M(Oxidation (M))|F}YP[{I|L}P][WK]T{M(Oxidation (M))|F};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F};[HV]{[ES]|[DT]|[{I|L}C]}QW[RK]E 6.5685;6.061;5.5674;2.9115;1.6097;1.5833;1.4595;1.2334;0.95993;0.60424 +;+;-;-;-;-;-;-;-;- + 818 NaN NaN 361179.6 NaN 14228 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17728 74.329 NaN 1772400 35 0 150980 0.261 -1 MYPYIFHVL 9 109 599.8021355882393 1197.5897182432784 2 601.822021484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 14.581692164780916 0.23437375358055648 1 YYP[KT]WVV 8 -1 30.517 0 0 2.5482 0 0 0 158.01869391569167 158.01869391569167 7.840839562850075 0 0 0 0 0.6694451763165201 1.3979400086720375 0 0 YYP[KT]WVV 2.5482 - 4404 NaN NaN 370412.2 NaN 14229 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17729 74.332 NaN 952580 35 0 158820 0.261 + 5218 FFDAELSQM 9 64 544.2418377696521 1086.469122606104 2 544.2418212890625 MULTI HCD FTMS 0 0 0 17726 453044.21875 0.1927714439958939 8 -0.21263885498046875 3 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 133.0521902211835 0.0004198702180815479 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 82.718 0 0 7.6135 7.6135 89.874 0 0 0 4.137342758552691 54.74932183384787 4.137342758552691 8.96713777483761 0 2.6549471895720984 0 1.5356668758921828 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;[YN]S{I|L}EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{[QS]|[NT]}[YV]EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA[{I|L}T]DQM;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA[{I|L}T]D[AG]M;[YN]S[{M(Oxidation (M))|F}E][PA]{I|L}{M(Oxidation (M))|F};[YN]D[{M(Oxidation (M))|F}T][PA]{I|L}{M(Oxidation (M))|F} 7.6135;6.7881;6.766;4.0568;3.9488;3.1013;1.7962;0.3909 +;-;-;-;-;-;-;- + 492 NaN NaN 227231.2 NaN 14230 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17730 74.336 NaN 274580 35 0 25334 0.261 -1 0 75 622.2943473180504 621.2870708514504 1 622.2941284179688 MULTI HCD FTMS 0 0 0 17726 125714.640625 0.7093012748533547 -4 0.1072235107421875 4 NaN NaN 1 [Y{I|L}]Y 3 -1 24.437 0 0 3.9333 0 0 0 179.05395252553163 179.05395252553163 8.406206186877935 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]Y 3.9333 - 28 NaN NaN 133332.1 NaN 14231 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17731 74.339 NaN 437940 35 0 59209 0.263 + 3173 EAVVEYVF 8 64 478.2422310119504 954.4699090907009 2 478.24237060546875 MULTI HCD FTMS 0 0 0 17726 144330 1 0 0 5 Unmodified _EAVVEYVF_ ENSG00000197157|ENST00000354725|SND1 46.92087301778293 0.1468278106890452 1 P{[QS]|[NT]}YV{M(Oxidation (M))|F} 6 5 46.585 0 0 4.8808 0 0 215.12710768867345 0 215.12710768867345 0 21.66386562212267 0 0 0 1.1307196863200843 0 0.6861818737241735 0 P{[QS]|[NT]}YV{M(Oxidation (M))|F} 4.8808 - 318 NaN NaN 142036.4 NaN 14232 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17732 74.342 NaN 202200 35 0 15217 0.261 + 28913 TWLVNSAAHLF 11 57 629.8325209541275 1257.650488975055 2 629.8327026367188 MULTI HCD FTMS 0 0 0 17726 28124.7109375 0.4279893909850479 1 -0.03619384765625 6 Unmodified _TWLVNSAAHLF_ ENSG00000099194|ENST00000370355|SCD 33.63211310249256 0.1779612567555719 1 {[WT]|[RM]}{I|L}VNSAAH{M(Oxidation (M))|F}{I|L} 11 2 + 31.33 0 0 2.4912 2.4912 82.508 0 0 0 11.381679254909653 7.033348097384685 7.033348097384685 8.33668578233475 0 1.8098943791441968 0 0 0 {[WT]|[RM]}{I|L}VNSAAH{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}{I|L}VN[QT]H{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}{I|L}VGGSAAH{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}{I|L}V[DP][RP]Q{M(Oxidation (M))|F};{[WT]|[RM]}{I|L}VGG[QT]H{M(Oxidation (M))|F}{I|L} 2.4912;1.8283;1.7653;1.6249;1.0996 -;-;-;-;- 172 + NaN NaN 111791 NaN 14233 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17733 74.346 NaN 302720 35 0 69688 0.264 -1 0 52 425.7418746033724 849.4691962735449 2 425.7420654296875 MULTI HCD FTMS 0 0 0 17726 47008.19921875 0.1281859386827596 8 -0.21263885498046875 7 NaN NaN 1 {I|L} 1 -1 15.485 0 0 1.8229 0 0 718.3747118758871 0 718.3747118758871 0 9.788018814460596 0 0 0 0 0 0 0 {I|L} 1.8229 - 39 + NaN NaN 120611 NaN 14234 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17734 74.349 NaN 506640 35 0 96060 0.261 + 8839 HLGDFLVF 8 67 474.25303852479726 946.4915241163945 2 474.2525939941406 MULTI HCD FTMS 0 0 0 17726 59764.92578125 1 0 0 8 Unmodified _HLGDFLVF_ ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant 13.50788311687929 0.4944073034352369 1 {M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F}V 5 6 34.553 0 0 3.6506 0 0 308.14814955879064 0 308.14814955879064 0 14.089934634871284 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F}V 3.6506 - 392 NaN NaN 161919.6 NaN 14235 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17735 74.352 NaN 91101 35 0 10281 0.261 + -1 MNQLKMRRDG 10 36 632.8165987963719 NaN 0 632.7362060546875 PEAK HCD FTMS 0 0 0 17726 21237.171875 1 0 0 9 Oxidation (M) _MNQLKM(Oxidation (M))RRDG_ REV__ENSG00000103404|ENST00000219689|USP31 1.4819007175156935 0.33891598740166873 1 N 1 -1 1.9897 0 0 0.15746 0 0 591.8128107745812 554.7533663385374 1146.5661771131186 0 0 0 0 0 0 0 0 0 N 0.15746 + + 2 + NaN NaN 95600.5 NaN 14236 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17736 74.356 NaN 72712 35 0 17083 0.264 + 8704 HGPPATHP 8 37 407.2041886382745 NaN 0 407.2041320800781 PEAK HCD FTMS 0 0 0 17726 24580.12890625 0.4135110216806157 3 -0.0949554443359375 10 Unmodified _HGPPATHP_ ENSG00000277258|ENST00000620225|PCGF2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95061.6 NaN 14237 3497 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17738 74.361 NaN 154730 35 0 15773 0.327 -1 PDGSSKGC 8 40 404.16961921983085 806.3246855064617 2 404.169921875 MULTI HCD FTMS 0 0 0 17737 159211.8125 0.015454161136697347 87 -1.7893524169921875 1 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 {I|L}[EP] 3 -1 2.4473 0 0 0.30351 0 0 449.15062148261876 0 449.15062148261876 0 2.447274948966937 0 0 0 0 0 0 0 {I|L}[EP] 0.30351 - 1 NaN NaN 109534.2 NaN 14238 3498 17737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17739 74.365 NaN 570900 35 0 45623 0.261 + 11645 IYVISAETF 9 80 521.7764216450937 1041.5382903569873 2 521.7767944335938 MULTI HCD FTMS 0 0 0 17737 136484.390625 0.42277979888171247 -3 0.08107757568359375 2 Unmodified _IYVISAETF_ ENSG00000116459|ENST00000369722|ATP5PB 162.95088124538222 7.661836540310252E-09 1 [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F} 9 0 + 88.228 0 0 8.4709 8.4709 97.112 0 0 0 6.773174902439578 6.773174902439578 6.773174902439578 52.54554718523507 0 2.9291746928241125 1.154901959985743 1.754432191740108 0 + + [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F};[Y{I|L}]V{I|L}S[DG][Y{I|L}];[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}K[{I|L}P]{M(Oxidation (M))|F};[Y{I|L}]V{[MG]|[TS]}SP[Y{I|L}];[Y{I|L}][DG]S{I|L}V[Y{I|L}] 8.4709;3.426;2.5897;1.8412;0.70664 +;-;-;-;- + 819 + NaN NaN 177494 NaN 14239 3498 17737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17740 74.369 NaN 284190 35 0 25932 0.261 + 34546 YPIYDVLQM 9 86 579.2810058676745 1156.5474588021489 2 579.2809448242188 MULTI HCD FTMS 0 0 0 17737 65659.15625 0.785178533324514 -2 0.0623779296875 3 Oxidation (M) _YPIYDVLQM(Oxidation (M))_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000493271.1_1_2:96945134-96947649:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 47.748688679222035 0.03472022231463587 1 [Y{I|L}][{M(Oxidation (M))|F}V]EV{I|L}Q{M(Oxidation (M))|F} 9 4 + 60.172 0 0 5.2028 5.2028 84.936 0 0 0 4.682656907234488 42.24046640435233 4.682656907234488 7.17371328289893 0 1.8494850021680094 1.3979400086720375 0 0.3807196863200844 [Y{I|L}][{M(Oxidation (M))|F}V]EV{I|L}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[YV]V{I|L}Q{M(Oxidation (M))|F};[Y{I|L}][{M(Oxidation (M))|F}V]EV{I|L}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[YV]V{I|L}[AG]{M(Oxidation (M))|F} 5.2028;4.5825;4.0774;3.4571 -;-;-;- 277 NaN NaN 134517.8 NaN 14240 3498 17737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17741 74.372 NaN 475430 35 0 49089 0.261 + 21107 PNQVDHAQI 9 72 511.2547301330154 NaN 0 511.255126953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PNQVDHAQI_ REV__ENSG00000132182|ENST00000254508|NUP210;REV__nc|ENSG00000132182|Q8TEM1-2|NUP210 13.90604991867851 0.22786006501039813 1 NQ{I|L}{M(Oxidation (M))|F}RT 6 -1 46.063 0 0 4.5138 0 0 96.0137194439621 162.0558260553344 258.0695454992965 0 0 0 0 0 0 0 1.0356668758921828 0.6549471895720985 NQ{I|L}{M(Oxidation (M))|F}RT 4.5138 - 197 + NaN NaN 155722.7 NaN 14241 3498 17737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17742 74.375 NaN 168190 35 0 12529 0.261 -1 QYSMEYFQF 9 57 629.7582471362854 1257.5019413393707 2 629.7589721679688 MULTI HCD FTMS 0 0 0 17737 66843.1796875 0.3260864113495504 9 -0.224853515625 5 Oxidation (M) _QYSM(Oxidation (M))EYFQF_ ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 10.799506525563784 0.2670509983294061 1 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 4 -1 36.23 0 0 2.8811 0 0 654.2333241193375 0 654.2333241193375 0 22.277522261115408 0 0 0 0.8807196863200843 0 0 0 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.8811 + + 75 NaN NaN 108933.2 NaN 14242 3498 17737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17743 74.379 NaN 77279 35 0 5506.5 0.261 + 19681 NWKELIMCNI 10 37 632.316723964577 NaN 0 632.3080444335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NWKELIMCNI_ ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1 3.3196427980023873 0.3373431348853355 1 T 1 10 10.485 0 0 0.83038 0 0 245.13105427505394 913.4227999322874 1158.5538542073414 0 0 0 0 0 0 0 0.5 0 T 0.83038 - 5 + NaN NaN 98357.6 NaN 14243 3498 17737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17745 74.383 NaN 6109900 35 0 1126900 0.327 + 28497 TPQFPDMIL 9 84 539.2679605796511 1076.5213682261021 2 539.2683715820312 MULTI HCD FTMS 0 0 0 17744 5581627 0.7733803858625153 10 -0.26413726806640625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 93.16586880292088 0.00444300900000894 1 [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 82.947 0 0 7.7051 7.7051 86.687 0 0 0 1.250612633917001 16.478174818886373 1.250612633917001 1.250612633917001 0 2.1747425010840047 0 1.4489700043360187 0.28872548999643577 + + [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}T][QP]PD{M(Oxidation (M))|F}{I|L}{I|L};{I|L}{[QC]|[C(Carbamidomethyl (C))A]}EPD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}[DP]T{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[DP]T{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L} 7.7051;7.5889;6.8448;6.8448;6.5815;5.9869;4.0231;3.7436;3.7436;3.5914 +;-;-;-;-;-;-;-;-;- + 2893 NaN NaN 709622.7 NaN 14244 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17746 74.388 NaN 3685400 35 0 215640 0.252 + 16759 LYDIILKNF 9 130 569.8289992892563 1137.6434456453126 2 569.8292236328125 MULTI HCD FTMS 0 0 0 17744 2613995.75 1 0 0 2 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 223.05949007766432 5.22265287935879E-24 1 {I|L}YD{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 9 0 + 139.92 0 0 12.299 12.299 96.106 0 0 0 90.10073701872224 16.47817481888636 16.47817481888636 12.703037561203828 0 3.079689690656103 1.6989700043360187 0.555462187404089 2.224288708938645 + + {I|L}YD{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};{I|L}YD{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}NK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}GGK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}K{I|L}N{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}Y{I|L}{I|L}KN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y{I|L}{I|L}{I|L}NK{M(Oxidation (M))|F} 12.299;11.182;9.4864;9.1118;8.677;8.0827;7.9458;7.8555;7.4821;7.4809 +;-;+;-;-;-;-;-;-;- + 5889 + NaN NaN 625405.5 NaN 14245 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17747 74.391 NaN 1484100 35 0 197350 0.261 + 26649 SYADQMFLL 9 108 552.2575892312469 1102.5006255292938 2 552.2577514648438 MULTI HCD FTMS 0 0 0 17744 759226.625 0.38593428901077687 -9 0.25433349609375 3 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 96.36657018975838 0.004359138328518304 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 88.681 0 0 8.0436 8.0436 93.986 0 0 0 4.762036441594191 75.94720941673181 4.762036441594191 16.197887582883936 0 2.305462187404089 0 1.055462187404089 0.6989700043360187 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[YV][C(Carbamidomethyl (C))D]{I|L}{I|L};[Y{I|L}]{I|L}[YN]D[CS]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}T]A{[{M(Oxidation (M))|F}C]|[YS]}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}W{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[VG]{M(Oxidation (M))|F}A{M(Oxidation (M))|F}E{I|L} 8.0436;6.5744;4.6482;2.7217;1.9529;1.9274;1.8823;1.7985;1.6757;1.4364 +;-;-;-;-;-;-;-;-;- + 1389 NaN NaN 311311 NaN 14246 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17748 74.395 NaN 793570 35 0 284980 0.263 -1 0 51 413.1934236862167 824.3722944392334 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17744 362904.4375 0.27360982050465277 51 -1.3196029663085938 4 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 10.485 0 0 1.2718 0 0 238.05455869880217 423.27236258823825 661.3269212870405 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 1.2718 - 2 + NaN NaN 211227.8 NaN 14247 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17749 74.398 NaN 527180 35 0 90132 0.261 + 19392 NPFHLELAL 9 74 527.2900782306192 1052.5656035280383 2 527.2901611328125 MULTI HCD FTMS 0 0 0 17744 191961.625 0.5067123524855934 3 -0.08837127685546875 5 Unmodified _NPFHLELAL_ ENSG00000155561|ENST00000285968|NUP205 62.57269311338072 0.013982455292112035 1 NE{I|L}A{I|L} 5 4 59.425 0 0 5.6457 0 0 494.26048476386876 0 494.26048476386876 0 35.233827801468145 0 0 0 1 0 0.3054621874040891 1.079689690656103 NE{I|L}A{I|L} 5.6457 - 344 NaN NaN 163975.6 NaN 14248 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17750 74.401 NaN 766530 35 0 123840 0.261 -1 VMSRVFLIW 9 93 583.8233366339339 1165.6321203346677 2 583.8233642578125 MULTI HCD FTMS 0 0 0 17744 261157.640625 0.9571056441102298 3 -0.08837127685546875 6 Oxidation (M) _VM(Oxidation (M))SRVFLIW_ ENSG00000206527|ENST00000383657|HACD2 29.84058131909904 0.11198220037953927 1 [YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W 9 -1 + 65.111 0 0 5.5859 5.5859 82.38 0 0 0 7.851059537508377 33.84134988843236 7.851059537508377 0.12304505667545129 0 0.9247425010840047 1.3979400086720375 0 0 [YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]G{I|L}{I|L}W;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}AVW;[YV]{I|L}[R{M(Oxidation (M))|F}]AV{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}{I|L}GW;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}G{I|L}[R{M(Oxidation (M))|F}]{I|L}P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}G[R{M(Oxidation (M))|F}]{I|L}P{M(Oxidation (M))|F};[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]AVW;[YV]{I|L}[R{M(Oxidation (M))|F}]A{I|L}VW 5.5859;5.5753;4.9183;4.8987;4.8609;4.7476;4.3473;4.3368;4.2311;4.1737 -;-;-;-;-;-;-;-;-;- 1993 NaN NaN 202266.2 NaN 14249 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17751 74.405 NaN 520030 35 0 41632 0.261 + 22698 QYAHLEWLL 9 90 586.8090565541842 1171.6035601751682 2 586.80908203125 MULTI HCD FTMS 0 0 0 17744 213125.0625 0.2136347549688391 6 -0.153656005859375 7 Unmodified _QYAHLEWLL_ ENSG00000119720|ENST00000354366|NRDE2 52.268347100219714 0.028397529699942435 1 [YV]T[KC]{M(Oxidation (M))|F}W{I|L} 8 6 54.703 0 0 4.6691 0 0 0 128.0629106191756 128.0629106191756 39.720209157281126 0 0 0 0 0.8807196863200843 1.6989700043360187 1.0994850021680094 0.6307196863200843 [YV]T[KC]{M(Oxidation (M))|F}W{I|L} 4.6691 - 967 NaN NaN 166194.2 NaN 14250 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17752 74.408 NaN 1623600 35 0 292640 0.261 + 11431 IYPWVHVVI 9 112 563.3264051785566 1124.638257423913 2 563.3270874023438 MULTI HCD FTMS 0 0 0 17744 328311.53125 0.08319135226746437 -6 0.16620635986328125 8 Unmodified _IYPWVHVVI_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 93.76273176245871 0.004427368897683185 1 [Y{I|L}]P{[RE]|[WV]}HVV{I|L} 9 0 + 53.782 0 0 4.7822 4.7822 82.192 0 0 0 2.584011684580922 16.478174818886373 2.584011684580922 2.584011684580922 0 1.7416440611282624 1.6989700043360187 0.3054621874040891 0 + + [Y{I|L}]P{[RE]|[WV]}HVV{I|L};{I|L}YP{[RE]|[WV]}HVV{I|L};[Y{I|L}][WR]V{I|L}Y{I|L};[Y{I|L}][WR]VY{I|L}{I|L};[Y{I|L}]V[WP]HVV{I|L};[Y{I|L}]V[WR]{I|L}Y{I|L};[Y{I|L}][WR][Y{I|L}]V{I|L};[Y{I|L}]V[WR]Y{I|L}{I|L};[YV]{I|L}[WP]HVV{I|L};[YV]{I|L}[WR]{I|L}Y{I|L} 4.7822;4.5524;4.482;4.255;4.0183;3.679;3.5513;3.452;2.503;2.1637 +;+;-;-;-;-;-;-;-;- + 3303 NaN NaN 330639.4 NaN 14251 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17753 74.411 NaN 175150 35 0 29128 0.261 + 25492 SFFELYLL 8 40 516.2759307282112 1030.5373085232222 2 516.2763061523438 MULTI HCD FTMS 0 0 0 17744 56259.84765625 0.4408474629292284 5 -0.13741302490234375 9 Unmodified _SFFELYLL_ REV__ENSG00000153827|ENST00000675903|TRIP12;REV__ENST00000479037.5_1_2:230672327-230744801:-|nuORF;REV__nc|ENSG00000153827|Q14669-2|TRIP12;REV__nc|ENSG00000153827|Q14669-3|TRIP12;REV__nc|ENSG00000153827|Q14669-4|TRIP12;REV__nc|ENSG00000153827|Q14669|TRIP12;REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant 13.50788311687929 0.4944073034352369 1 D{I|L}{I|L} 3 -1 31.995 0 0 3.1047 0 0 671.3298035162699 0 671.3298035162699 0 29.318722087674658 0 0 0 0.8807196863200843 0 0 0 D{I|L}{I|L} 3.1047 - 27 NaN NaN 108067.9 NaN 14252 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17754 74.415 NaN 241270 35 0 32734 0.261 + 33485 YIAPEVLVR 9 59 530.3136877811668 1058.6128226291335 2 530.8150024414062 MULTI HCD FTMS 0 0 0 17744 42532.53515625 0.05574751492788144 15 -0.398651123046875 10 Unmodified _YIAPEVLVR_ ENSG00000159792|ENST00000291041|PSKH1 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 7 25.969 0 0 2.4531 0 0 814.4354661457854 0 814.4354661457854 0 11.989700043360187 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4531 - 25 NaN NaN 125190.1 NaN 14253 3499 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17756 74.419 NaN 1803500 35 0 111870 0.327 + 27221 SYNNFFRMF 9 108 613.276194093433 1224.537835253666 2 613.276611328125 MULTI HCD FTMS 0 0 0 17755 1075905.25 0.6231541559094088 2 -0.052398681640625 1 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 1 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9 0 + 101.79 0 0 8.3124 8.3124 89.566 0 0 0 5.354159879047685 5.354159879047685 5.354159879047685 5.354159879047685 0 2.7856668758921828 2 0 0.6307196863200843 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 8.3124;7.8752;7.5604;7.5604;7.1232;7.1232;7.1013;6.812;6.3493;5.717 +;+;-;-;-;-;-;-;-;- + 5097 + NaN NaN 352581.6 NaN 14254 3500 17755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17757 74.424 NaN 341670 35 0 25739 0.264 -1 0 77 435.250960108541 868.487367283882 2 435.2510070800781 MULTI HCD FTMS 0 0 0 17755 243047.984375 0.5852578087445658 17 -0.456298828125 2 NaN NaN 1 V 1 -1 7.7423 0 0 0.89147 0 0 542.2938075688414 224.09758936099846 766.3913969298399 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.89147 - 32 + NaN NaN 133717.4 NaN 14255 3500 17755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17758 74.427 NaN 288320 35 0 26786 0.261 -1 YLYKDGEMIP 10 69 622.7959300991873 NaN 0 622.7967529296875 PEAK HCD FTMS 0 0 0 17755 95717.4921875 0.8225673084682712 11 -0.287200927734375 3 Oxidation (M) _YLYKDGEM(Oxidation (M))IP_ ENSG00000163395|ENST00000335211|IGFN1;nc|ENSG00000163395|Q86VF2-4|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1 7.289230182591677 0.3339457182549222 1 YYDV 4 -1 18.928 0 0 1.5221 0 0 114.08720273333968 586.2533053033811 700.3405080367208 0 0 0 0 0 0 0 0 0 YYDV 1.5221 - 59 + NaN NaN 124056.2 NaN 14256 3500 17755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17759 74.431 NaN 271310 35 0 43170 0.261 + 4728 EYSIVIQQL 9 60 546.8006577440257 1091.5867625548512 2 546.8003540039062 MULTI HCD FTMS 0 0 0 17755 100341.2734375 0.7998700023472317 -1 0.03597259521484375 4 Unmodified _EYSIVIQQL_ ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST 53.832793166522166 0.026208976789938845 1 [Y{I|L}]{[ES]|[DT]|[{I|L}C]}V{I|L}QQ{I|L} 9 2 + 60.881 0 0 5.5773 5.5773 87.229 0 0 0 9.070677831939307 43.89129674262179 9.070677831939307 9.208187539523749 0 1.9247425010840047 0 1.2302046884880937 0 [Y{I|L}]{[ES]|[DT]|[{I|L}C]}V{I|L}QQ{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}V{I|L}[AG]Q{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}V{I|L}Q[AG]{I|L} 5.5773;4.7337;4.7337 -;-;- 173 NaN NaN 125699.1 NaN 14257 3500 17755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17761 74.436 NaN 3273600 35 0 1555500 0.326 + 17274 LYPQFMFHL 9 62 606.2992527843624 1210.5839526355246 2 606.2996215820312 MULTI HCD FTMS 0 0 0 17760 1863956 0.1650661192198706 7 -0.189056396484375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 104.79918948944588 0.003791450360204016 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 97.404 0 0 8.0461 8.0461 93.942 0 0 0 81.0292953409734 7.147642715192504 7.147642715192504 15.902639302688954 0 2.7856668758921828 2 0 0.6694451763165201 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQW{[CA]|SS}{[MS]|[{M(Oxidation (M))|F}A]}{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[RH][HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H[Y{I|L}]{I|L} 8.0461;6.7324;6.4736;5.713;3.1879;3.0762;2.7749;2.5752;1.7191;1.5737 +;-;+;-;-;-;-;-;-;- + 480 + NaN NaN 591879 NaN 14258 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17762 74.44 NaN 3146300 35 0 408200 0.261 + 35584 YYIFIPSKF 9 106 589.318302735094 1176.622052536988 2 589.3185424804688 MULTI HCD FTMS 0 0 0 17760 1960248 0.056597922749451794 17 -0.45960235595703125 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 114.6490535036381 0.0021834323520089267 1 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 90.707 0 0 7.7091 7.7091 88.424 0 0 0 4.978634061979918 4.978634061979918 4.978634061979918 4.978634061979918 0 2.579689690656103 2 1.1056270500406935 0.2742275032520141 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}PKS{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};T[QP]{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};T[QP]{I|L}{M(Oxidation (M))|F}{I|L}PKS{M(Oxidation (M))|F} 7.7091;7.286;7.0739;6.0164;5.8463;5.5818;5.3454;5.2185;5.2139;5.211 +;-;-;-;-;-;-;-;-;- + 5513 + NaN NaN 560778.1 NaN 14259 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17763 74.444 NaN 1727800 35 0 155690 0.261 + 2340 DPACPEIKIQL 11 82 642.3369357901879 1282.6593186471757 2 642.3370361328125 MULTI HCD FTMS 0 0 0 17760 1026301.5 1 0 0 3 Carbamidomethyl (C) _DPAC(Carbamidomethyl (C))PEIKIQL_ ENSG00000076864|ENST00000374765|RAP1GAP;ENST00000471600.6_1_1:21924215-21924573:-|nuORF;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP 43.77239144664712 0.11265467298873516 1 TAN{I|L}Q{I|L} 6 7 91.701 0 0 7.1493 0 0 624.2983568783059 0 624.2983568783059 0 50.80158994999016 0 0 0 2.25 0 1.4049471895720984 1.0994850021680094 TAN{I|L}Q{I|L} 7.1493 - 2782 NaN NaN 354760.3 NaN 14260 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17764 74.447 NaN 991750 35 0 102610 0.261 -1 IMGIENICEL 10 107 575.7790029674118 1149.5434530016234 2 575.7926635742188 MULTI HCD FTMS 0 0 0 17760 137825.78125 0.15265986430018913 29 -0.7725296020507812 4 Oxidation (M) _IM(Oxidation (M))GIENICEL_ ENSG00000175745|ENST00000327111|NR2F1;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2 21.536976647645854 0.3096624038397699 1 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC] 9 -1 + 40.333 0 0 3.5086 3.5086 80.915 0 0 0 3.979400086720368 0.38119338268735703 0.38119338268735703 3.310836782141344 0 0 1.0969100130080565 1.031234684152075 0 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC];[YT]VY{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]TY{M(Oxidation (M))|F}{I|L}{I|L}[EC];[YT]VY{M(Oxidation (M))|F}TP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]TY{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]TY{M(Oxidation (M))|F}TP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L}[EC];{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}H{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]VY{M(Oxidation (M))|F}TGG{[QD]|[EN]|[WG]|[KD]|[RS]} 3.5086;3.2206;3.1624;3.1256;2.8744;2.7795;2.7076;2.5971;2.4195;2.4195 -;-;-;-;-;-;-;-;-;- 4332 NaN NaN 238841 NaN 14261 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17765 74.45 NaN 686230 35 0 313310 0.261 -1 WHPEMSPCS 9 70 565.7235751266332 1129.4325973200664 2 565.723876953125 MULTI HCD FTMS 0 0 0 17760 238741.609375 0.5229749820238145 12 -0.3202056884765625 5 Carbamidomethyl (C) _WHPEMSPC(Carbamidomethyl (C))S_ CBX6|p.R359H|1|0.23|ENSG00000183741|chr22:38866372-38866372|C/T|missense_variant 2.0597508629832335 0.3354026079994024 1 T{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.4342 0 0 863.3063898999477 0 863.3063898999477 0 6.73393743112328 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.4342 - 47 + NaN NaN 202748.4 NaN 14262 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17766 74.454 NaN 652830 35 0 78625 0.261 + 35217 YVLRLEPLL 9 90 558.3449235731425 1114.675294213085 2 558.3451538085938 MULTI HCD FTMS 0 0 0 17760 129102.0546875 0.24544805141874226 7 -0.189056396484375 6 Unmodified _YVLRLEPLL_ ENSG00000165943|ENST00000298894|MOAP1 38.175570920033316 0.07371992880350783 1 [YV]{I|L}[R{I|L}]EP{I|L}{I|L} 9 0 + 45.323 0 0 4.066 4.066 89.459 0 0 0 13.278617174821271 17.11254100081387 13.278617174821271 45.32255983111032 0 1.5021934810768762 1.3979400086720375 0 0 + + [YV]{I|L}[R{I|L}]EP{I|L}{I|L} 4.066 + + 1817 NaN NaN 198673.3 NaN 14263 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17767 74.457 NaN 273100 35 0 23170 0.261 + 11636 IYVHDLLTF 9 70 560.8058039694926 1119.597055005785 2 560.8054809570312 MULTI HCD FTMS 0 0 0 17760 91087.453125 0.01254030685924678 42 -1.1155014038085938 7 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 64.23631603340823 0.01165516075559909 1 [Y{I|L}][HD]V{I|L}{I|L}T{M(Oxidation (M))|F} 9 2 + 68.623 0 0 6.1293 6.1293 89.666 0 0 0 19.951134127217713 60.03977796201987 19.951134127217713 11.989700043360187 0 1.805462187404089 1.5228787452803376 0.4247425010840047 0 [Y{I|L}][HD]V{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}][HD]V{I|L}T{I|L}{M(Oxidation (M))|F};[Y{I|L}]VV{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VV{[YC]|[HE]}T{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{I|L}{[YC]|[HE]}T{I|L}{M(Oxidation (M))|F};[Y{I|L}][HD]VVV[Y{I|L}] 6.1293;5.0584;4.4883;3.4174;2.4326;1.3617;1.1278 -;-;-;-;-;-;- 177 NaN NaN 140638.6 NaN 14264 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17768 74.46 NaN 152420 35 0 8690.4 0.262 + 21221 PQRKADKA 8 64 457.2642318855019 912.5139108378038 2 457.2642517089844 MULTI HCD FTMS 0 0 0 17760 150323.3125 0.8134931385690112 2 -0.04901885986328125 8 Unmodified _PQRKADKA_ ENSG00000008323|ENST00000684764|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6 5.230669730166228 0.5342319408533849 1 Q 1 7 8.2268 0 0 0.90156 0 0 414.2472150560635 367.19626794986567 781.4434830059292 0 0 0 0 0 0.4247425010840047 0 0 0 + Q 0.90156 + + 23 + NaN NaN 108315.5 NaN 14265 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17769 74.464 NaN 154470 35 0 14517 0.261 + 35677 YYIYSQTYF 9 65 624.284739077969 1246.554925222738 2 624.7850341796875 MULTI HCD FTMS 0 0 0 17760 39624.96484375 0.09183845651865308 11 -0.2972259521484375 9 Unmodified _YYIYSQTYF_ ENSG00000121858|ENST00000241261|TNFSF10 34.93206674587334 0.08860942999206235 1 [Y{I|L}]YYSQTY{M(Oxidation (M))|F} 9 2 + 34.301 0 0 2.7516 2.7516 78.988 0 0 0 0.26802492411967194 0.26802492411967194 0.26802492411967194 0.26802492411967194 0 1.7672203223519531 0 0.3494850021680094 0 [Y{I|L}]YYSQTY{M(Oxidation (M))|F};Y{I|L}YYSQTY{M(Oxidation (M))|F};Y{I|L}YYS[AG]TY{M(Oxidation (M))|F};Y{I|L}Y{[QS]|[NT]}YTY{M(Oxidation (M))|F} 2.7516;2.7301;1.9914;1.1441 -;-;-;- 355 NaN NaN 110802 NaN 14266 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17770 74.467 NaN 252930 35 0 61460 0.262 + 17677 MAFMRFIL 8 60 514.7742786308668 1027.5340043285335 2 514.7744140625 MULTI HCD FTMS 0 0 0 17760 75011.0390625 0.6371126402660828 -3 0.07501983642578125 10 Unmodified _MAFMRFIL_ REV__ENST00000557444.5_1_16:90057772-90063225:+|nuORF 18.13498045792455 0.4603629008820478 1 {M(Oxidation (M))|F}{[CA]|SS}{I|L}DC{I|L} 7 -1 35.578 0 0 3.4624 0 0 244.17833144355626 0 244.17833144355626 0 15.093275985023382 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{[CA]|SS}{I|L}DC{I|L} 3.4624 - 98 NaN NaN 117290.6 NaN 14267 3501 17760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17772 74.472 NaN 2256000 35 0 621490 0.327 + 18695 MYPYIFHVL 9 109 599.8021355882393 1197.5897182432784 2 599.80224609375 MULTI HCD FTMS 0 0 0 17771 1151439.875 0.8903399068438547 4 -0.10416412353515625 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.466 0 0 6.552 6.552 87.05 0 0 0 5.6424927368725974 52.2062251842808 5.6424927368725974 6.672268755754658 0 2.6861818737241734 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};[YT][RH]SGEHV{I|L};[HV]{M(Oxidation (M))|F}{I|L}ME{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}HY{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}ME{M(Oxidation (M))|F}Y{I|L};[{M(Oxidation (M))|F}V]P[Y{I|L}]{M(Oxidation (M))|F}HY{I|L} 6.552;5.9948;3.1574;2.0041;1.6932;1.4066;0.013943 +;+;-;-;-;-;- + 1855 NaN NaN 426877.3 NaN 14268 3502 17771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17773 74.476 NaN 420690 35 0 82009 0.262 + 25258 SATLVDEVF 9 64 490.75040386507845 979.4862547969569 2 490.75048828125 MULTI HCD FTMS 0 0 0 17771 153312.5625 0.5872855483881316 -2 0.052398681640625 2 Unmodified _SATLVDEVF_ ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 64.23631603340823 0.01165516075559909 1 VDEV{M(Oxidation (M))|F} 5 4 54.112 0 0 5.5246 0 0 372.1997547834 0 372.1997547834 0 43.143265708843046 0 0 0 1.8807196863200843 0 0.4247425010840047 0 + VDEV{M(Oxidation (M))|F} 5.5246 + + 116 NaN NaN 152064.7 NaN 14269 3502 17771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17774 74.48 NaN 327280 35 0 18852 0.261 + -1 MCNNGGNVQM 10 86 578.7130902508452 1155.4116275684903 2 578.7133178710938 MULTI HCD FTMS 0 0 0 17771 75242.3125 0.5589782282665726 -1 0.03614044189453125 3 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))NNGGNVQM(Oxidation (M))_ REV__ENSG00000166147|ENST00000316623|FBN1 3.944395688203298 0.4544253912184634 1 {I|L}Q{M(Oxidation (M))|F} 3 -1 24.935 0 0 2.1581 0 0 749.2230422186841 0 749.2230422186841 0 9.006375246153906 0 0 0 0 0 0 0.3252574989159953 {I|L}Q{M(Oxidation (M))|F} 2.1581 - 107 + NaN NaN 131559.3 NaN 14270 3502 17771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17776 74.485 NaN 660700 35 0 86450 0.326 + 5219 FFDAELSQM 9 73 544.2418377696521 1086.469122606104 2 544.2418212890625 MULTI HCD FTMS 0 0 0 17775 172952.09375 0.07359154686112131 14 -0.391021728515625 1 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 114.6490535036381 0.0021834323520089267 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 68.316 0 0 6.2879 6.2879 88.418 0 0 0 3.2568864632742844 51.87916549520927 3.2568864632742844 9.208187539523749 0 1.9247425010840047 0 1.3539171939081172 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;[YN]S{I|L}[YV]E{[CP]|[EA]};[YN]S{I|L}E[YV]{[CP]|[EA]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP][YV]SQM;[Y{I|L}][NS][YV]E{[CP]|[EA]};[Y{I|L}][NS]E[YV]{[CP]|[EA]};{[QS]|[NT]}[YV][YV]E{[CP]|[EA]};{[QS]|[NT]}[YV]E[YV]{[CP]|[EA]};NYS[YV][EP]{[ES]|[DT]|[{I|L}C]} 6.2879;5.4404;4.6738;4.564;3.7614;2.7519;2.6421;1.7423;1.6325;1.4839 +;-;-;-;-;-;-;-;-;- + 356 NaN NaN 180035.9 NaN 14271 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17777 74.489 NaN 678290 35 0 50201 0.261 + 1147 AYLEQLESL 9 95 533.2773549565679 1064.5401569799358 2 533.2780151367188 MULTI HCD FTMS 0 0 0 17775 174703.453125 0.5797428852133021 -2 0.04901885986328125 2 Unmodified _AYLEQLESL_ ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 121.5340881639634 0.001118397630175091 1 [Y{I|L}]AEQ{I|L}ES{I|L} 9 2 + 90.773 0 0 8.5269 8.5269 89.227 0 0 0 3.789850105233299 14.348331157524967 3.789850105233299 3.789850105233299 0 1.9247425010840047 1.3979400086720375 0.9876954943324545 0.3054621874040891 [Y{I|L}]AEQ{I|L}ES{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQ{I|L}ES{I|L};{[TV]|[{I|L}S]}E{M(Oxidation (M))|F}Q{I|L}ES{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}EQ{I|L}ES{I|L};[Y{I|L}]AE[AG]{I|L}ES{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[AG]{I|L}ES{I|L};{[TV]|[{I|L}S]}E{M(Oxidation (M))|F}[AG]{I|L}ES{I|L};{[QN]|[E{I|L}]|[KN]}S{M(Oxidation (M))|F}Q{I|L}ES{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}TQ{I|L}ES{I|L};[Y{I|L}]V[DN]{I|L}ES{I|L} 8.5269;8.1709;8.1371;7.7633;7.375;7.019;6.9852;6.931;6.8164;6.7949 -;+;-;-;-;-;-;-;-;- + 1388 NaN NaN 190245.5 NaN 14272 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17778 74.493 NaN 457470 35 0 51594 0.261 + 15616 LPEDLYHLI 9 83 556.8034486085028 1111.5923442838055 2 556.802978515625 MULTI HCD FTMS 0 0 0 17775 84495.8984375 0.7093601852139101 1 -0.036163330078125 3 Unmodified _LPEDLYHLI_ ENSG00000110700|ENST00000525634|RPS13;ENST00000458227.1_1_2:25191966-25192092:-|nuORF;ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000531908.5_1_11:17095982-17097186:-|nuORF 37.97399986684836 0.07464525285885698 1 {I|L}PED[Y{I|L}]H{I|L}{I|L} 9 0 + 54.345 0 0 4.8889 4.8889 91.024 0 0 0 42.89136227485692 10.642492736872597 10.642492736872597 54.34501246997776 0 1.5994850021680094 0 0.4247425010840047 0 + + {I|L}PED[Y{I|L}]H{I|L}{I|L} 4.8889 + + 103 + NaN NaN 157266.1 NaN 14273 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17779 74.496 NaN 135760 35 0 13296 0.264 + 28802 TTSMHSGS 8 42 404.16961921983085 806.3246855064617 2 404.1698303222656 MULTI HCD FTMS 0 0 0 17775 77716.859375 0.007543717070737436 92 -1.8814163208007812 4 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 1 QC 2 -1 12.831 0 0 1.5913 0 0 420.1667703226711 152.07203088931877 572.2388012119899 0 0 0 0 0 0.4247425010840047 0 0 0 QC 1.5913 - 6 + NaN NaN 99638.7 NaN 14274 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17780 74.499 NaN 138740 35 0 27221 0.261 + 2255 DLIGCIIGR 9 42 480.2709919125728 958.5274308919456 2 480.27154541015625 MULTI HCD FTMS 0 0 0 17775 71843.0859375 0.8038731554061319 -1 0.01287841796875 5 Unmodified _DLIGCIIGR_ ENSG00000183570|ENST00000681687|PCBP3;ENSG00000197111|ENST00000546463|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366|PCBP2 45.69961567697781 0.039180348357221985 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}GC{I|L}{I|L}{[NV]|[RG]} 9 0 + 67.118 0 0 7.0022 7.0022 87.804 0 0 0 67.11812184018221 4.762036441594191 4.762036441594191 6.478174818886373 0 2.079689690656103 1.6989700043360187 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}GC{I|L}{I|L}{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}C(Carbamidomethyl (C)){I|L}{I|L}{[NV]|[RG]} 7.0022;6.3264 +;- + 60 + NaN NaN 102122.1 NaN 14275 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17781 74.503 NaN 136270 35 0 21855 0.261 + 16665 LWIMIALA 8 61 465.777439891302 929.540326849404 2 465.7776184082031 MULTI HCD FTMS 0 0 0 17775 53762.45703125 0.6622520823146429 2 -0.05240631103515625 6 Unmodified _LWIMIALA_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 0.7936320650641473 0.540814922690045 1 V 1 8 3.9794 0 0 0.4281 0 0 130.15185136287897 697.2937105768186 827.4455619396977 0 0 0 0 0 0 0 0 0 V 0.4281 - 10 + NaN NaN 114702.2 NaN 14276 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17782 74.506 NaN 299910 35 0 25546 0.261 + 35753 YYLSAALRMF 10 52 617.8186444806662 1233.6227360281323 2 618.321533203125 MULTI HCD FTMS 0 0 0 17775 55426.68359375 0.4465062782059205 7 -0.1923828125 7 Unmodified _YYLSAALRMF_ REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF 6.2057823575117 0.44245551207394906 1 YT 2 -1 33.456 0 0 2.712 0 0 0 966.4496754822077 966.4496754822077 12.486512420283233 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 YT 2.712 - 21 + NaN NaN 142189.2 NaN 14277 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17783 74.509 NaN 252030 35 0 35209 0.264 + 25535 SFLPSQTSDWF 11 47 438.8715251353992 1313.5927460063976 3 438.87139892578125 MULTI HCD FTMS 0 0 0 17775 49684.90625 0.2598920018801471 -5 0.1240386962890625 8 Unmodified _SFLPSQTSDWF_ ENSG00000187997|ENST00000340363|C17orf99 12.227587767072771 0.3505430386502343 1 AY 2 11 39.196 0 0 2.9839 0 0 0 1076.469906135452 1076.469906135452 13.226825097560422 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 AY 2.9839 - 31 + NaN NaN 124413.8 NaN 14278 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17784 74.513 NaN 279770 35 0 22828 0.261 + 29255 TYLPAGQSVLL 11 75 581.3274326171659 1160.6403123011316 2 581.32470703125 MULTI HCD FTMS 0 0 0 17775 48099.44140625 0.4255356494266558 -6 0.1602325439453125 9 Unmodified _TYLPAGQSVLL_ ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1 20.580933911654288 0.27776005981656166 1 W{I|L}{I|L} 3 9 26.872 0 0 2.3153 0 0 730.3672483869716 0 730.3672483869716 0 0.44506439708220213 0 0 0 0.6694451763165201 0 0 0 W{I|L}{I|L} 2.3153 - 152 NaN NaN 124244.6 NaN 14279 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17785 74.516 NaN 89175 35 0 4581.9 0.261 + 34104 YNNEWLYMK 9 58 630.7884637206713 NaN 0 630.7889404296875 PEAK HCD FTMS 0 0 0 17775 18518.17578125 0.5301946183711734 3 -0.09128570556640625 10 Unmodified _YNNEWLYMK_ REV__ENST00000292211.4_1_1:154522462-154522513:-|nuORF 9.38312468134398 0.24977752951804 1 DN 2 -1 7.9453 0 0 0.6308 0 0 162.0633033184925 865.4012545221311 1027.4645578406237 0 0 0 0 0 0.3252574989159953 0 0 0 DN 0.6308 - 72 + NaN NaN 95917.6 NaN 14280 3503 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17787 74.521 NaN 616400 35 0 51740 0.327 + 11646 IYVISAETF 9 62 521.7764216450937 1041.5382903569873 2 521.7764892578125 MULTI HCD FTMS 0 0 0 17786 226793.71875 0.7025257786746312 3 -0.0646514892578125 1 Unmodified _IYVISAETF_ ENSG00000116459|ENST00000369722|ATP5PB 154.46347324262513 4.107785341423729E-06 1 [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F} 9 0 + 91.073 0 0 8.7441 8.7441 97.396 0 0 0 18.741436528314566 68.32563782453214 18.741436528314566 48.954875462954845 0 2.579689690656103 1.3979400086720375 1.0484550065040281 0 + + [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F};[Y{I|L}]V{I|L}S[DG][Y{I|L}];[Y{I|L}][DG]S{I|L}V[Y{I|L}] 8.7441;4.0438;1.3776 +;-;- + 308 NaN NaN 182591.2 NaN 14281 3504 17786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17788 74.525 NaN 301400 35 0 27861 0.261 + 1062 AYGSLFNTI 9 48 493.25298664916056 984.4914203651211 2 493.253662109375 MULTI HCD FTMS 0 0 0 17786 122532.1015625 0.3151043847342349 -4 0.1014404296875 2 Unmodified _AYGSLFNTI_ ENSG00000137944|ENST00000260508|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-2|KYAT3;nc|ENSG00000137944|Q6YP21-3|KYAT3 131.26759243768294 0.0005280990274065272 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]NT{I|L} 9 2 + 73.835 0 0 7.4998 7.4998 87.384 0 0 0 10.726825097560422 10.726825097560422 10.726825097560422 3.4678748622465605 0 1.2614393726401687 2 0.805462187404089 0.7302046884880937 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]QNT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]GGT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]GGT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}][AG]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]QGGT{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}[Y{I|L}]NT{I|L};[YQ]A[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{I|L}{I|L}SGS{M(Oxidation (M))|F} 7.4998;7.1475;6.4102;6.2067;5.8228;5.4694;5.1909;4.4235;4.3426;3.7453 -;-;-;-;-;-;-;-;-;- 305 NaN NaN 144270.1 NaN 14282 3504 17786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17789 74.529 NaN 164190 35 0 46960 0.261 -1 QYSMEYFQF 9 55 629.7582471362854 1257.5019413393707 2 629.75927734375 MULTI HCD FTMS 0 0 0 17786 9463.111328125 0.04616465026972104 15 -0.4072265625 3 Oxidation (M) _QYSM(Oxidation (M))EYFQF_ ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.2416 0 0 817.295000184433 0 817.295000184433 0 17.21848749616356 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.2416 + + 19 NaN NaN 110516.2 NaN 14283 3504 17786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17790 74.532 NaN 344110 35 0 24835 0.263 + -1 QDRSLRTM 8 65 511.756344658599 NaN 0 511.7561950683594 PEAK HCD FTMS 0 0 0 17786 19963.576171875 0.6474870087374488 1 -0.01624298095703125 4 Oxidation (M) _QDRSLRTM(Oxidation (M))_ REV__ENST00000372685.7_1_X:102508942-102510130:-|nuORF 10.823927491677226 0.38822285293237185 1 NQ{I|L}{M(Oxidation (M))|F}RT 6 -1 35.812 0 0 3.5058 0 0 97.01529254447185 162.0555361383422 259.07082868281407 0 0 0 0 0 0 0 0.3054621874040891 0.6382104921644451 NQ{I|L}{M(Oxidation (M))|F}RT 3.5058 - 153 + NaN NaN 146423.4 NaN 14284 3504 17786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17792 74.537 NaN 5261200 35 0 978180 0.327 + 28498 TPQFPDMIL 9 80 539.2679605796511 1076.5213682261021 2 539.268310546875 MULTI HCD FTMS 0 0 0 17791 4179066.25 0.5790440437832938 16 -0.4432373046875 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 70.33199760932243 0.0089807860198535 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 78.369 0 0 7.2798 7.2798 86.456 0 0 0 2.2184874961635614 16.478174818886373 2.2184874961635614 2.2184874961635614 0 1.9247425010840047 0 1.1549471895720984 0.25 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}T][QP]PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}{[NV]|[RG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{[NV]|[RG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L} 7.2798;7.0737;6.5357;6.3296;5.9861;5.5932;3.7561;3.6401;0.94085;0.73477 -;+;-;-;-;-;-;-;-;- + 1189 NaN NaN 669690.1 NaN 14285 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17793 74.542 NaN 6138300 35 0 1317300 0.223 + 11432 IYPWVHVVI 9 117 563.3264051785566 1124.638257423913 2 563.3265991210938 MULTI HCD FTMS 0 0 0 17791 3946462.25 1 0 0 2 Unmodified _IYPWVHVVI_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 109.15424536547461 0.003080475237576971 1 {I|L}YPWVHVV{I|L} 9 0 + 72.59 0 0 6.4546 6.4546 84.58 0 0 0 18.001896823007826 1.5237220041214528 1.5237220041214528 1.5237220041214528 0 2.6549471895720984 1.6989700043360187 0 0 + + {I|L}YPWVHVV{I|L};[Y{I|L}]PWVHVV{I|L};[Y{I|L}]PWVVHV{I|L};[Y{I|L}]PWVVVH{I|L};[Y{I|L}][WR]V{I|L}Y{I|L};[Y{I|L}][WR]VY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}WVHVV{I|L};[Y{I|L}][WR]Y{I|L}V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}WVVHV{I|L};[Y{I|L}][WR]YV{I|L}{I|L} 6.4546;6.3191;5.7203;4.9473;4.6792;4.5885;4.4452;4.1654;3.8464;3.6289 +;+;-;-;-;-;-;-;-;- + 3225 + NaN NaN 786928.4 NaN 14286 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17794 74.544 NaN 2470000 35 0 344330 0.261 + 26650 SYADQMFLL 9 104 552.2575892312469 1102.5006255292938 2 552.2578125 MULTI HCD FTMS 0 0 0 17791 1586737.125 0.8065790160926972 -3 0.06528472900390625 3 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 155.02607137521346 3.513045939247001E-06 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 98.923 0 0 8.9726 8.9726 95.936 0 0 0 7.504311474114331 72.4797868503488 7.504311474114331 19.76280941356464 0 2.25 0 1.778659694992122 1.055462187404089 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{M(Oxidation (M))|F}VVD[CS]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{M(Oxidation (M))|F}VVDA[MT];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}QDA{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}A{M(Oxidation (M))|F}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}QDA{[{M(Oxidation (M))|F}C]|[YS]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[AG]DA{[{M(Oxidation (M))|F}C]|[YS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}QDA{[{M(Oxidation (M))|F}C]|[YS]} 8.9726;7.1801;4.8454;3.1794;2.1139;1.276;0.84727;0.58943;0.44081;0.095948 +;-;-;-;-;-;-;-;-;- + 1302 NaN NaN 452171.6 NaN 14287 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17795 74.548 NaN 1555400 35 0 60073 0.261 + 13715 KYPLNLYLL 9 116 568.8392548174598 1135.6639567017196 2 569.8289794921875 MULTI HCD FTMS 0 0 0 17791 76518.921875 0.360599557638439 -6 0.153656005859375 4 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}KP{I|L}{I|L}KN{M(Oxidation (M))|F} 8 6 65.03 0 0 5.7262 0 0 130.08963190060462 0 130.08963190060462 0 35.98889742371611 0 0 0 0 0 0 1.115356566548286 {M(Oxidation (M))|F}KP{I|L}{I|L}KN{M(Oxidation (M))|F} 5.7262 - 2472 + NaN NaN 320099.4 NaN 14288 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17796 74.551 NaN 1207600 35 0 120530 0.261 + 23204 RFLSGIINF 9 102 533.8060609483842 1065.5975689635684 2 533.8062133789062 MULTI HCD FTMS 0 0 0 17791 529739 0.9896726749623728 -1 0.01624298095703125 5 Unmodified _RFLSGIINF_ ENSG00000143228|ENST00000271452|NUF2 55.23464941255904 0.024247875903973527 1 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 8 5 68.127 0 0 6.3934 0 0 132.15376820877276 0 132.15376820877276 0 31.85947712088675 0 0 0 1.5 0 0.6382104921644451 1.0114393726401687 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 6.3934 - 1839 + NaN NaN 267299.8 NaN 14289 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17797 74.554 NaN 765990 35 0 275040 0.263 -1 0 46 413.1934236862167 824.3722944392334 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17791 305517.375 0.23034315785902368 57 -1.345062255859375 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.5132 0 0 659.293282453685 0 659.293282453685 0 12.474250108400469 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5132 - 5 + NaN NaN 201694.4 NaN 14290 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17798 74.558 NaN 688550 35 0 102140 0.261 + 21781 QAIGIEVEL 9 72 486.2740691727834 970.5335854123668 2 486.2741394042969 MULTI HCD FTMS 0 0 0 17791 300637.84375 0.1635814961524283 -7 0.17644500732421875 7 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 69.10491478415734 0.009377850133389008 1 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 55.599 0 0 5.7288 5.7288 84.422 0 0 0 8.454387282529794 39.785240617616964 8.454387282529794 3.7358997863662324 0 1.5044321917401078 0 0.6549471895720985 1.1663865622122673 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}QQE{I|L};[Q{I|L}]{I|L}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L} 5.7288;5.3438;5.2911;3.8843;3.4689;3.3765;2.9775 -;-;-;-;-;-;- 263 NaN NaN 182683.6 NaN 14291 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17799 74.561 NaN 320990 35 0 51071 0.261 + 7522 FWVGFVLLW 9 70 583.8233366339339 1165.6321203346677 2 583.823486328125 MULTI HCD FTMS 0 0 0 17791 158888.265625 0.5823029165397328 9 -0.2449951171875 8 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 20.871210003555333 0.18003371494288972 1 [YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W 9 5 + 63.35 0 0 5.4348 5.4348 84.828 0 0 0 20.65938719897659 36.18317473533317 20.65938719897659 6.020599913279625 0 0.9247425010840047 1.5228787452803376 0 0 [YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}{I|L}GW;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}AVW;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]{I|L}GW;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]AVW;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}Q{NN|[MP]|[D{I|L}]|[EV]};[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}M[QP];[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]Q{NN|[MP]|[D{I|L}]|[EV]};[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]M[QP] 5.4348;4.9183;4.7476;4.4894;4.2311;3.9729;2.5164;2.4725;1.9999;1.956 -;-;-;-;-;-;-;-;-;- 334 NaN NaN 136039.7 NaN 14292 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17800 74.564 NaN 523230 35 0 47512 0.261 + 11212 IYKPVTDFFL 10 81 621.8419269855586 1241.6693010379172 2 621.8419799804688 MULTI HCD FTMS 0 0 0 17791 191603.890625 0.6790544443040359 -3 0.06528472900390625 9 Unmodified _IYKPVTDFFL_ ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF 71.70789743142352 0.01556163018108538 1 [Y{I|L}]K[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 80.411 0 0 6.4761 6.4761 86.475 0 0 0 5.593859345357188 16.53212513775344 5.593859345357188 5.593859345357188 0 2.1989700043360187 1.6989700043360187 0.3807196863200844 0 + + [Y{I|L}]K[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YK[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YK]{I|L}[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YK[VP][RH]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DT[VP]{I|L}YK{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DT[VP]{I|L}KY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DT[VP]K{I|L}Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{I|L}[HT]R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}K[HT]R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6.4761;6.0255;4.6651;3.6721;1.989;1.3665;1.2659;0.42887;0.32825 +;+;-;-;-;-;-;-;- + 1405 NaN NaN 164745.5 NaN 14293 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17801 74.568 NaN 423330 35 0 19223 0.261 + 17422 LYRLEFGLF 9 96 579.3212628994772 1156.6279728657544 2 579.3215942382812 MULTI HCD FTMS 0 0 0 17791 143152.109375 1 0 0 10 Unmodified _LYRLEFGLF_ ENST00000361272.8_2_8:17087834-17087987:-|nuORF 26.88365393820708 0.12808753336095696 1 {I|L}Y 2 7 35.969 0 0 3.1098 0 0 0 877.4593107244394 877.4593107244394 11.53212513775344 0 0 0 0 0.3494850021680094 2 0 0 + {I|L}Y 3.1098 + + 168 + NaN NaN 160130.4 NaN 14294 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17802 74.571 NaN 579100 35 0 223930 0.264 + -1 KSTKQVRVEM 10 52 407.8927538026981 1220.6564320082944 3 407.89300537109375 MULTI HCD FTMS 0 0 0 17791 97438.71875 0.23669502872263562 -6 0.153656005859375 11 Oxidation (M) _KSTKQVRVEM(Oxidation (M))_ REV__ENSG00000130598|ENST00000381911|TNNI2;REV__nc|ENSG00000130598|P48788-2|TNNI2 2.0860074813731053 0.46426213543441425 1 {M(Oxidation (M))|F} 1 -1 11.42 0 0 0.93556 0 0 1055.5770690705974 0 1055.5770690705974 0 11.419983281826003 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.93556 + + 2 + NaN NaN 180520 NaN 14295 3505 17791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17804 74.576 NaN 791080 35 0 45576 0.327 + 27222 SYNNFFRMF 9 92 613.276194093433 1224.537835253666 2 613.2766723632812 MULTI HCD FTMS 0 0 0 17803 345565.84375 0.20014847187812673 8 -0.20611572265625 1 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 106.94017166704063 0.003441928997083001 1 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 60.723 3.7236 1.4889 4.9588 4.9588 61.537 0 0 0 0 47.05066822622348 0 0 0 2.4604093769761874 0 0 0.28872548999643577 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 4.9588 + + 607 + NaN NaN 212238.4 NaN 14296 3506 17803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17805 74.58 NaN 259340 35 0 30837 0.261 + -1 GWRRKWFCRKW 11 63 555.9627635524893 1664.8664612576677 3 555.9631958007812 MULTI HCD FTMS 0 0 0 17803 64655.95703125 0.3686617597665072 1 -0.00952911376953125 2 Carbamidomethyl (C) _GWRRKWFC(Carbamidomethyl (C))RKW_ REV__ENST00000565716.1_1_16:2511058-2514276:+|nuORF;REV__nc|ENSG00000162062|Q7L2K0-3|TEDC2 0.09484139111097674 0.41850472438158626 1 {I|L}AE{M(Oxidation (M))|F}A 5 -1 46.454 0 0 2.7902 0 0 0 1130.5759738771542 1130.5759738771542 32.47425010840047 0 0 0 0 0.8494850021680094 0 0 0 {I|L}AE{M(Oxidation (M))|F}A 2.7902 - 45 + NaN NaN 130435.7 NaN 14297 3506 17803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17807 74.585 NaN 1955100 35 0 273760 0.327 + 35585 YYIFIPSKF 9 84 589.318302735094 1176.622052536988 2 589.3184814453125 MULTI HCD FTMS 0 0 0 17806 954449.8125 0.027557674720802543 23 -0.6226959228515625 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 82.5293158979368 0.005033931517079822 1 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 87.362 0 0 7.4248 7.4248 93.48 0 0 0 22.672655519383085 16.478174818886373 16.478174818886373 18.979400086720375 0 2.6549471895720984 2 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}[{M(Oxidation (M))|F}V][TP]K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}[{M(Oxidation (M))|F}V]{I|L}{[NV]|[RG]}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}[KS]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 7.4248;5.8117;5.4979;4.9196;4.6387;4.5824;4.5624;4.4572;4.3634;3.5541 -;-;-;-;-;-;-;-;-;- 1660 NaN NaN 380351.1 NaN 14298 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17808 74.59 NaN 2541700 35 0 1202600 0.261 + 27909 TEFRNFIVW 9 80 606.3135830274978 1210.6126131217954 2 606.2996826171875 MULTI HCD FTMS 0 0 0 17806 31479.392578125 0.17107739390652396 -4 0.1008148193359375 2 Unmodified _TEFRNFIVW_ ENSG00000087302|ENST00000261700|RTRAF 10.073929032068715 0.27331982688540024 1 YPQ{M(Oxidation (M))|F}RCVW 8 6 41.513 0 0 3.4291 0 0 113.11264966923711 0 113.11264966923711 0 11.15840191492586 0 0 0 1.0317183090963749 0 0 0.6861818737241735 YPQ{M(Oxidation (M))|F}RCVW 3.4291 - 712 + NaN NaN 466461 NaN 14299 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17809 74.593 NaN 1341600 35 0 102280 0.261 + 13716 KYPLNLYLL 9 108 568.8392548174598 1135.6639567017196 2 568.8394165039062 MULTI HCD FTMS 0 0 0 17806 396823.125 0.428354023738233 -6 0.14983367919921875 3 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 88.90359156742426 0.00455469703666567 1 [Y{I|L}][KP]N{I|L}Y{I|L}{I|L} 9 2 + 64.13 0 0 5.6469 5.6469 84.248 0 0 0 3.7236374744834677 16.478174818886373 3.7236374744834677 3.7236374744834677 0 1.4916440611282626 1.2218487496163564 0 1.3684151806525389 [Y{I|L}][KP]N{I|L}Y{I|L}{I|L};[YK]P{I|L}N{I|L}Y{I|L}{I|L};[{I|L}P]KYN{I|L}Y{I|L}{I|L};[Y{I|L}]N[KP]{I|L}Y{I|L}{I|L};[K{I|L}]PYN{I|L}Y{I|L}{I|L};[Y{I|L}][KP]GG{I|L}Y{I|L}{I|L};[Y{I|L}]V[QP]KY{I|L}{I|L};[YK]P{I|L}GG{I|L}Y{I|L}{I|L};[{I|L}P]KYGG{I|L}Y{I|L}{I|L};[Y{I|L}]GG[KP]{I|L}Y{I|L}{I|L} 5.6469;5.319;5.1168;5.0678;4.8968;4.8361;4.7682;4.5082;4.306;4.257 -;+;-;-;-;-;-;-;-;- + 1681 NaN NaN 289183.1 NaN 14300 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17810 74.597 NaN 795550 35 0 88483 0.261 -1 IMGIENICEL 10 104 575.7790029674118 1149.5434530016234 2 575.7926025390625 MULTI HCD FTMS 0 0 0 17806 89438.015625 0.09906416060014675 35 -0.9295120239257812 4 Oxidation (M) _IM(Oxidation (M))GIENICEL_ ENSG00000175745|ENST00000327111|NR2F1;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2 21.536976647645854 0.3096624038397699 1 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC] 9 -1 + 45.926 0 0 3.9952 3.9952 81.987 0 0 0 5.484771632553311 0.6682426284721288 0.6682426284721288 4.516675202793721 0 0 1.154901959985743 1.055462187404089 0 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC];[YT]VY{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]TY{M(Oxidation (M))|F}{I|L}{I|L}[EC];[YV]TY{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]VY{M(Oxidation (M))|F}TGG{[QD]|[EN]|[WG]|[KD]|[RS]};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}H{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]TY{M(Oxidation (M))|F}TGG{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}E]{I|L}H{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}H{M(Oxidation (M))|F}TGG{[QD]|[EN]|[WG]|[KD]|[RS]};[HQ]VY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}TM{I|L} 3.9952;3.6022;3.518;3.1251;2.8012;2.4444;2.3241;1.9207;1.6434;1.444 -;-;-;-;-;-;-;-;-;- 2582 NaN NaN 208710.8 NaN 14301 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17811 74.6 NaN 313540 35 0 25472 0.263 -1 0 66 435.250960108541 868.487367283882 2 435.251220703125 MULTI HCD FTMS 0 0 0 17806 270882.75 0.6522837253696194 24 -0.6587677001953125 5 NaN NaN 1 Q 1 -1 2.7642 0 0 0.31828 0 0 370.220128722257 367.19684778385005 737.4169765061071 0 0 0 0 0 0 0 0 0 Q 0.31828 - 3 + NaN NaN 122352.8 NaN 14302 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17812 74.603 NaN 439320 35 0 35583 0.261 + 16276 LQLVPDENLLQ 11 66 641.3550067211062 1280.6954605090123 2 642.3370971679688 MULTI HCD FTMS 0 0 0 17806 33258.06640625 0.6894110940572553 -1 0.00952911376953125 6 Unmodified _LQLVPDENLLQ_ REV__ENSG00000118873|ENST00000358951|RAB3GAP2;REV__ENST00000237724.9_1_1:220369588-220445709:-|nuORF;REV__nc|ENSG00000118873|Q9H2M9-2|RAB3GAP2 10.799506525563784 0.36298595732910816 1 Q{I|L}NAT 5 -1 39.706 0 0 3.1004 0 0 129.13202454585058 621.2771090143186 750.4091335601693 0 0 0 0 0 0 0 0.75 0.4247425010840047 Q{I|L}NAT 3.1004 - 242 + NaN NaN 145472.5 NaN 14303 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17813 74.607 NaN 458010 35 0 140860 0.261 -1 TGCVCRTCSS 10 73 565.7235751266332 1129.4325973200664 2 565.7233276367188 MULTI HCD FTMS 0 0 0 17806 95655.125 0.2095371536127341 18 -0.492523193359375 7 2 Carbamidomethyl (C) _TGC(Carbamidomethyl (C))VC(Carbamidomethyl (C))RTCSS_ nc|ENSG00000106100|Q9Y239-2|NOD1 4.897010918128616 0.4493830473644964 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 16.86 0 0 1.4928 0 0 817.3189326245571 0 817.3189326245571 0 0.2319811098079363 0 0 0 0.23965182871044374 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4928 - 96 + NaN NaN 152291 NaN 14304 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17814 74.61 NaN 156220 35 0 7045.8 0.262 + 8160 GPKVQSARA 9 67 457.2642318855019 912.5139108378038 2 457.26458740234375 MULTI HCD FTMS 0 0 0 17806 159045.15625 0.8606924713158599 8 -0.22783660888671875 8 Unmodified _GPKVQSARA_ REV__ENSG00000150594|ENST00000280155|ADRA2A 3.2813086475875832 0.32614229037259 1 V 1 -1 9.732 0 0 1.0665 0 0 586.3204731930757 224.09717737369377 810.4176505667695 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.0665 + + 16 + NaN NaN 113670.4 NaN 14305 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17815 74.613 NaN 294820 35 0 12731 0.261 + 21946 QEFHLSWIL 9 90 586.8090565541842 1171.6035601751682 2 586.8095703125 MULTI HCD FTMS 0 0 0 17806 40663.46484375 0.040760712260570174 14 -0.39482879638671875 9 Unmodified _QEFHLSWIL_ ENST00000401028.2_1_1:91794325-91794628:+|nuORF 43.85829265575387 0.04763305254408404 1 [YV]{I|L}M 4 8 21.146 0 0 1.8049 0 0 0 662.3229870152651 662.3229870152651 2.7300127206373723 0 0 0 0 0 1.6989700043360187 0 0 [YV]{I|L}M 1.8049 - 442 NaN NaN 137776.5 NaN 14306 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17816 74.617 NaN 155840 35 0 22321 0.261 + 17678 MAFMRFIL 8 55 514.7742786308668 1027.5340043285335 2 514.7744750976562 MULTI HCD FTMS 0 0 0 17806 66416.859375 0.5641172441209628 3 -0.0915679931640625 10 Unmodified _MAFMRFIL_ REV__ENST00000557444.5_1_16:90057772-90063225:+|nuORF 32.116972079565 0.3321965280364247 1 {M(Oxidation (M))|F}{[CA]|SS}{I|L}DC{I|L} 7 -1 31.4 0 0 3.0559 0 0 244.1778279035172 0 244.1778279035172 0 17.588191538938602 0 0 0 1.2059771852360797 0 0 0 {M(Oxidation (M))|F}{[CA]|SS}{I|L}DC{I|L} 3.0559 - 146 NaN NaN 104241.2 NaN 14307 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17817 74.62 NaN 124480 35 0 7685.4 0.261 + 35168 YVHVPPSAAL 10 55 527.2900782306192 1052.5656035280383 2 527.2905883789062 MULTI HCD FTMS 0 0 0 17806 25782.814453125 0.06805772020966445 11 -0.3097686767578125 11 Unmodified _YVHVPPSAAL_ REV__ENST00000394818.7_1_11:61919466-61919706:+|nuORF 10.073929032068715 0.4168838835836452 1 {I|L}A{I|L} 3 -1 23.729 0 0 2.2544 0 0 737.3524647443375 0 737.3524647443375 0 6.73902187720806 0 0 0 0.3807196863200844 0 0 0 {I|L}A{I|L} 2.2544 - 13 NaN NaN 99049.6 NaN 14308 3507 17806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17819 74.625 NaN 5384500 35 0 656080 0.327 + 21535 PYLFHVVTF 9 124 561.8029047975507 1121.5912566619013 2 561.8031616210938 MULTI HCD FTMS 0 0 0 17818 3255136.25 1 0 0 1 Unmodified _PYLFHVVTF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 189.49234813286833 4.2663325471414313E-13 1 PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F} 9 0 + 116.56 0 0 10.392 10.392 95.043 0 0 0 69.18096418344844 14.973024840566467 14.973024840566467 9.980436656220107 0 3.242992819099939 1.5228787452803376 2.030369551124698 0 + + PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HVTV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HTVV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HTVV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HTVV{M(Oxidation (M))|F} 10.392;9.5022;8.4634;8.2195;7.6976;7.1807;6.649;6.6286;5.6102;5.2913 +;+;-;-;-;-;-;-;-;- + 4099 + NaN NaN 881581.1 NaN 14309 3508 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17820 74.629 NaN 1367500 35 0 362540 0.261 + 18696 MYPYIFHVL 9 90 599.8021355882393 1197.5897182432784 2 599.80224609375 MULTI HCD FTMS 0 0 0 17818 701817.3125 0.5426735465737231 10 -0.27054595947265625 2 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 73.695 0 0 6.1536 6.1536 84.117 0 0 0 1.7427928606188203 6.104159301997001 1.7427928606188203 1.7427928606188203 0 2.6861818737241734 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}ME{M(Oxidation (M))|F}Y{I|L};[HV]{M(Oxidation (M))|F}{I|L}ME{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{[{M(Oxidation (M))|F}H]|[RQ]}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[{I|L}V]{[{M(Oxidation (M))|F}H]|[RQ]}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EP][KC]WY{I|L} 6.1536;6.008;5.6439;1.4176;1.1509;1.0404;0.68615;0.41096 +;-;+;-;-;-;-;- + 1080 NaN NaN 297591.3 NaN 14310 3508 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17821 74.633 NaN 1700900 35 0 129970 0.261 + 17004 LYIRLCMKY 9 99 601.8239457638567 1201.6333385945134 2 602.3280029296875 MULTI HCD FTMS 0 0 0 17818 668762 0.8249953373179636 2 -0.05234527587890625 3 Unmodified _LYIRLCMKY_ REV__ENSG00000127191|ENST00000247668|TRAF2;REV__nc|ENSG00000127191|Q12933-2|TRAF2;REV__nc|ENSG00000127191|Q12933-3|TRAF2;REV__nc|ENSG00000127191|Q12933-4|TRAF2 23.1484247019978 0.1603590852062899 1 [Y{I|L}]{M(Oxidation (M))|F}{I|L}S[KS]V 8 -1 32.114 0 0 2.6726 0 0 0 261.12854857496126 261.12854857496126 7.741049764686139 0 0 0 0 0.9177353201839438 2 0.3807196863200844 0 [Y{I|L}]{M(Oxidation (M))|F}{I|L}S[KS]V 2.6726 - 1503 NaN NaN 351626.4 NaN 14311 3508 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17822 74.636 NaN 474460 35 0 46729 0.262 + 25259 SATLVDEVF 9 77 490.75040386507845 979.4862547969569 2 490.7502746582031 MULTI HCD FTMS 0 0 0 17818 113378.8046875 0.4343136165797849 4 -0.1081695556640625 4 Unmodified _SATLVDEVF_ ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 46.020951573049366 0.037705236580089195 1 VDEV{M(Oxidation (M))|F} 5 4 45.048 0 0 4.5992 0 0 372.2000742323069 0 372.2000742323069 0 16.938943381497687 0 0 0 1.4386218330464624 0 0.2614393726401688 0 + VDEV{M(Oxidation (M))|F} 4.5992 + + 275 + NaN NaN 172178.4 NaN 14312 3508 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17823 74.639 NaN 236450 35 0 105910 0.261 + 1380 AYPPAPFMHIL 11 55 628.828444736111 1255.642336539022 2 628.828125 MULTI HCD FTMS 0 0 0 17818 73373.8125 0.9255773322915821 1 -0.02285003662109375 5 Unmodified _AYPPAPFMHIL_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 3.5964929083625545 0.40314767035630406 1 {M(Oxidation (M))|F}[PA]P{[ES]|[DT]|[{I|L}C]} 6 7 9.6658 0 0 0.76979 0 0 609.3566518907545 0 609.3566518907545 0 -0.7918124604762511 -0.7918124604762511 0 0 0 0 0 0 {M(Oxidation (M))|F}[PA]P{[ES]|[DT]|[{I|L}C]} 0.76979 - 9 NaN NaN 113721.6 NaN 14313 3508 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17824 74.643 NaN 173690 35 0 21655 0.261 + 12967 KYIESPVLFL 10 50 604.849723890115 1207.68489484703 2 604.849853515625 MULTI HCD FTMS 0 0 0 17818 52697.08984375 0.5941233101197059 4 -0.1081695556640625 6 Unmodified _KYIESPVLFL_ ENSG00000100304|ENST00000216129|TTLL12 28.494509381512117 0.24525010509582015 1 {I|L}{M(Oxidation (M))|F}{I|L} 3 7 33.94 0 0 2.8103 0 0 816.4390736310562 0 816.4390736310562 0 11.989700043360187 0 0 0 0.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L} 2.8103 + + 103 NaN NaN 108013.5 NaN 14314 3508 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17826 74.648 NaN 295490 35 0 47644 0.327 + 1072 AYHEVPYTTSF 11 43 438.8715251353992 1313.5927460063976 3 438.8717956542969 MULTI HCD FTMS 0 0 0 17825 92243.234375 0.48250627103917193 1 -0.0294952392578125 1 Unmodified _AYHEVPYTTSF_ ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF 7.0370850670814 0.388058401935362 1 AY 2 9 39.196 0 0 2.9839 0 0 0 1076.470036746162 1076.470036746162 13.226825097560422 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 + AY 2.9839 + + 19 + NaN NaN 139567.5 NaN 14315 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17827 74.652 NaN 502340 35 0 37552 0.261 -1 0 75 497.275780052096 496.26850358549603 1 497.2760925292969 MULTI HCD FTMS 0 0 0 17825 85910.59375 0.37904543151671655 3 -0.08531951904296875 2 NaN NaN 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 4 -1 + 35.445 0 0 7.1424 7.1424 94.263 0 0 0 5.228787452803374 29.75895023531386 5.228787452803374 35.44531259372398 0 0.9247425010840047 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 7.1424 - 20 NaN NaN 168554 NaN 14316 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17828 74.656 NaN 374540 35 0 47320 0.261 + 5220 FFDAELSQM 9 64 544.2418377696521 1086.469122606104 2 544.2418823242188 MULTI HCD FTMS 0 0 0 17825 71615.671875 0.030472646838250548 20 -0.5446014404296875 3 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 63.960520009940105 0.0120409805053046 1 AE{I|L}SQM 6 3 57.506 0 0 5.293 0 0 409.16478163886876 0 409.16478163886876 0 38.06937881901167 0 0 0 1.805462187404089 0 0.7302046884880937 0 + AE{I|L}SQM 5.293 + + 202 NaN NaN 136476.1 NaN 14317 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17829 74.659 NaN 231310 35 0 16976 0.261 + 18606 MVVDIVQEL 9 66 531.2813310102306 1060.548109087261 2 531.2811889648438 MULTI HCD FTMS 0 0 0 17825 49664.921875 0.3879596780350454 1 -0.0294952392578125 4 Oxidation (M) _M(Oxidation (M))VVDIVQEL_ ENSG00000160209|ENST00000291565|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;nc|ENSG00000160209|O00764-3|PDXK 41.95555342248728 0.056367691549927025 1 VQE{I|L} 4 5 46.186 0 0 4.3549 0 0 573.2832723224815 0 573.2832723224815 0 36.88879389667527 0 0 0 1.4247425010840047 0 0 0 + VQE{I|L} 4.3549 + + 177 NaN NaN 115010.4 NaN 14318 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17830 74.662 NaN 372070 35 0 51203 0.261 + 29256 TYLPAGQSVLL 11 83 581.3274326171659 1160.6403123011316 2 581.3275756835938 MULTI HCD FTMS 0 0 0 17825 113032.6953125 1 0 0 5 Unmodified _TYLPAGQSVLL_ ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1 36.39500950444726 0.16016733442035713 1 [YT]{I|L}PA{[QG]|[NA]}[VS]{I|L}{I|L} 11 0 + 63.83 0 0 5.4995 5.4995 85.99 0 0 0 15.095147837223557 52.34646791087587 15.095147837223557 8.565473235138121 0 2.2059771852360797 1.6989700043360187 0 0 + + [YT]{I|L}PA{[QG]|[NA]}[VS]{I|L}{I|L};[YT]{I|L}PQQ[VS]{I|L}{I|L};[YT]{I|L}PA{[VA]|[{I|L}G]}[NS]{I|L}{I|L};[YT]{I|L}P[Q{I|L}][NS]{I|L}{I|L};[YT]{I|L}P[{I|L}V]DD{I|L}{I|L} 5.4995;4.7615;4.2906;3.5526;3.4483 +;-;-;-;- + 299 NaN NaN 151056.9 NaN 14319 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17831 74.666 NaN 393940 35 0 82577 0.261 + 1676 CESVHHAEL 9 66 512.729602771995 1023.4446526107901 2 512.7301025390625 MULTI HCD FTMS 0 0 0 17825 82877.6171875 0.3542370799711704 -3 0.07160186767578125 6 Unmodified _CESVHHAEL_ REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF 10.823927491677226 0.26684000660059787 1 E{I|L} 2 -1 20.445 0 0 1.9977 0 0 763.3071278021619 0 763.3071278021619 0 4.960762528683702 0 0 0 0.4247425010840047 0 0 0 E{I|L} 1.9977 + + 39 NaN NaN 142162.1 NaN 14320 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17832 74.669 NaN 272700 35 0 18709 0.261 + 33008 YAWEQPTL 8 68 504.2443345835501 NaN 0 504.2444763183594 PEAK HCD FTMS 0 0 0 17825 62170.84375 0.6888339020620868 1 -0.0294952392578125 7 Unmodified _YAWEQPTL_ REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF 20.453626601364224 0.3843868670602312 1 T{I|L}D 3 -1 11.911 0 0 1.1835 0 0 130.04975207550018 544.2415255182249 674.291277593725 0 0 0 0 0 0 0 0.3494850021680094 0 T{I|L}D 1.1835 - 21 + NaN NaN 129009.8 NaN 14321 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17833 74.672 NaN 580200 35 0 55956 0.261 + 22819 QYLPAIRALW 10 89 615.853243607017 1229.691934280834 2 615.8531494140625 MULTI HCD FTMS 0 0 0 17825 75777.6484375 0.3627408068322374 -2 0.06207275390625 8 Unmodified _QYLPAIRALW_ ENSG00000120063|ENST00000439174|GNA13;nc|ENSG00000120063|Q14344-2|GNA13 62.57269311338072 0.03206542651389879 1 R{I|L}AP{I|L}SW 7 7 46.204 0 0 3.7573 0 0 388.21125991035314 0 388.21125991035314 0 7.60987815306558 0 0 0 1.4947026752325154 0 0.3807196863200844 0.5 R{I|L}AP{I|L}SW 3.7573 - 2752 NaN NaN 161555.9 NaN 14322 3509 17825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17835 74.677 NaN 1999600 35 0 359290 0.327 + 28499 TPQFPDMIL 9 91 539.2679605796511 1076.5213682261021 2 539.2681274414062 MULTI HCD FTMS 0 0 0 17834 1265499 0.17534530790549552 21 -0.56719970703125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 70.33199760932243 0.0089807860198535 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 70.614 0 0 6.5595 6.5595 87.211 0 0 0 5.6424927368725974 57.426609503452184 5.6424927368725974 6.9897000433601875 0 1.8494850021680094 0 1.1307196863200843 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}PD{M(Oxidation (M))|F}{I|L}{I|L};[VP][YN]PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{I|L}[C(Carbamidomethyl (C))S]{I|L}{I|L};[QP]T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};[TP]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L} 6.5595;5.9102;5.7254;5.0548;4.6329;4.3846;2.1981;1.5938;1.4789;0.82957 -;+;-;-;-;-;-;-;-;- + 750 NaN NaN 382879.2 NaN 14323 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17836 74.682 NaN 595430 35 0 53670 0.261 + 1063 AYGSLFNTI 9 82 493.25298664916056 984.4914203651211 2 493.2532043457031 MULTI HCD FTMS 0 0 0 17834 304481.4375 0.783006533006332 2 -0.05582427978515625 2 Unmodified _AYGSLFNTI_ ENSG00000137944|ENST00000260508|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-2|KYAT3;nc|ENSG00000137944|Q6YP21-3|KYAT3 131.26759243768294 0.0005280990274065272 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{I|L}YNT{I|L} 9 2 + 89.99 0 0 9.1407 9.1407 89.836 0 0 0 23.978174818886373 16.478174818886373 16.478174818886373 3.4678748622465605 0 1.2059771852360797 2 0.805462187404089 0.7302046884880937 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{I|L}YNT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}YNT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}YGGT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{I|L}YGGT{I|L};{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}YNT{I|L};[{I|L}T]N{M(Oxidation (M))|F}YNT{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}YNT{I|L};[YQ]A{I|L}YNT{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}T{I|L}YNT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{I|L}YE[KA] 9.1407;8.7885;7.8477;7.4637;6.7051;6.6067;6.1208;6.0399;5.9419;5.8032 -;-;-;-;-;-;-;-;-;- 620 NaN NaN 185458.4 NaN 14324 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17837 74.685 NaN 383660 35 0 46746 0.261 + 29257 TYLPAGQSVLL 11 78 581.3274326171659 1160.6403123011316 2 581.3294677734375 MULTI HCD FTMS 0 0 0 17834 75189.46875 0.6652010601191511 1 -0.029541015625 3 Unmodified _TYLPAGQSVLL_ ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1 28.233623360808718 0.2127292296419295 1 [YT]{I|L}[PA]{[QG]|[NA]}W{I|L} 9 3 40.352 0 0 3.4767 0 0 0 128.06658515542804 128.06658515542804 31.170912423450403 0 0 0 0 1.5 1.6989700043360187 0 0 [YT]{I|L}[PA]{[QG]|[NA]}W{I|L} 3.4767 - 279 NaN NaN 139523.2 NaN 14325 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17838 74.688 NaN 914560 35 0 69338 0.262 -1 0 88 497.275780052096 496.26850358549603 1 497.2650451660156 MULTI HCD FTMS 0 0 0 17834 83406.8515625 0.36799869098749577 4 -0.10501861572265625 4 NaN NaN 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 4 -1 + 27.224 0 0 5.4857 5.4857 90.779 0 0 0 2.843181179205061 11.421590589602529 2.843181179205061 27.22357194224834 0 0.8807196863200843 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 5.4857 - 39 NaN NaN 236314.8 NaN 14326 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17839 74.692 NaN 262880 35 0 17246 0.261 + 1663 CDDCRNGGTCL 11 74 578.7130902508452 1155.4116275684903 2 578.7134399414062 MULTI HCD FTMS 0 0 0 17834 79019.8671875 0.5870418371089887 7 -0.198638916015625 5 Unmodified _CDDCRNGGTCL_ ENSG00000162591|ENST00000356575|MEGF6;nc|ENSG00000162591|O75095-2|MEGF6 2.498486711656943 0.4079631525365919 1 {M(Oxidation (M))|F} 1 11 13.979 0 0 1.2099 0 0 990.3323561835278 0 990.3323561835278 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2099 - 13 + NaN NaN 119422.1 NaN 14327 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17840 74.695 NaN 413070 35 0 50168 0.261 + 9086 HPFFNDFTF 9 83 586.2638455887189 1170.5131382442378 2 586.26513671875 MULTI HCD FTMS 0 0 0 17834 179062.609375 0.3547343793306742 -7 0.1923828125 6 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 29.081581746732265 0.1154664336125038 1 MPT{M(Oxidation (M))|F} 4 6 42.652 0 0 3.6438 0 0 676.3065170057597 0 676.3065170057597 0 18.39603729470838 0 0 0 1.4247425010840047 0 0.2742275032520141 0 MPT{M(Oxidation (M))|F} 3.6438 - 899 + NaN NaN 157889.1 NaN 14328 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17841 74.698 NaN 438800 35 0 48382 0.261 -1 SVQDWMDVL 9 81 554.7523749695022 NaN 0 554.75341796875 PEAK HCD FTMS 0 0 0 17834 62991.2890625 0.677131036424173 -5 0.13997650146484375 7 Oxidation (M) _SVQDWM(Oxidation (M))DVL_ ENSG00000117528|ENST00000370214|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3 20.453626601364224 0.18435338882370536 1 GDP{I|L}Q 5 -1 16.035 0 0 1.4479 0 0 258.0612552106855 336.1566561334594 594.2179113441449 0 0 0 0 0 0 0 0.3807196863200844 0 GDP{I|L}Q 1.4479 - 126 + NaN NaN 151890.7 NaN 14329 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17842 74.702 NaN 149870 35 0 14452 0.261 + 2256 DLIGCIIGR 9 59 480.2709919125728 958.5274308919456 2 480.271484375 MULTI HCD FTMS 0 0 0 17834 25645.52734375 0.2869552542023216 6 -0.1591796875 8 Unmodified _DLIGCIIGR_ ENSG00000183570|ENST00000681687|PCBP3;ENSG00000197111|ENST00000546463|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366|PCBP2 34.40172386719151 0.0910440009062557 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}C(Carbamidomethyl (C)) 4 5 39.297 0 0 4.0997 0 0 0 454.2774363453238 454.2774363453238 23.050211291332683 0 0 0 0 1 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}C(Carbamidomethyl (C)) 4.0997 - 172 NaN NaN 103665.8 NaN 14330 3510 17834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17844 74.707 NaN 1982000 35 0 282790 0.327 + 26651 SYADQMFLL 9 91 552.2575892312469 1102.5006255292938 2 552.2579345703125 MULTI HCD FTMS 0 0 0 17843 1525312.25 0.7753551829444579 3 -0.07547760009765625 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 129.77232118876745 0.0006187813247758304 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.794 0 0 8.7795 8.7795 93.824 0 0 0 4.137342758552691 71.8719876294113 4.137342758552691 10.541586590187677 0 2.25 0 1.7218487496163564 1.024227503252014 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[TA]{[DS]|[MA]|[CV]|TT}CS{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[TA]{I|L}{[DS]|[MA]|[CV]|TT}CS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA]{NN|[MP]|[D{I|L}]|[EV]}YS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[TA]{[DS]|[MA]|[CV]|TT}CS{I|L} 8.7795;7.8233;7.0152;6.0591;4.7164;2.4877;2.2147;2.0679;1.8572;1.7658 +;-;-;-;-;-;-;-;-;- + 1355 NaN NaN 388551.9 NaN 14331 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17845 74.711 NaN 2198400 35 0 343110 0.261 + 21782 QAIGIEVEL 9 92 486.2740691727834 970.5335854123668 2 486.2740783691406 MULTI HCD FTMS 0 0 0 17843 1092113.875 0.5942353078805505 -1 0.029541015625 2 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 139.13845188893973 5.0762478717762276E-05 1 [QA]{I|L}G{I|L}EVE{I|L} 9 0 + 67.048 0 0 6.9083 6.9083 84.708 0 0 0 0.0958217006001405 16.478174818886373 0.0958217006001405 0.0958217006001405 0 1.9604093769761874 0 1.110924374808178 1.591129063296272 + + [QA]{I|L}G{I|L}EVE{I|L};[Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[QA]VA{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};[{I|L}A]QG{I|L}EVE{I|L};[{I|L}A]NA{I|L}EVE{I|L};[{I|L}A]GQ{I|L}EVE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}QQE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L} 6.9083;6.8985;6.4519;6.409;6.3991;6.3655;5.8662;5.6559;5.3779;5.1019 +;-;-;-;-;-;-;-;-;- + 1204 NaN NaN 412320.8 NaN 14332 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17846 74.715 NaN 1068500 35 0 120510 0.261 + 12241 KLFIGGLSF 9 83 491.29198539636764 980.5694178595353 2 491.2921447753906 MULTI HCD FTMS 0 0 0 17843 522911.96875 0.8380741544022928 -2 0.0590362548828125 3 Unmodified _KLFIGGLSF_ AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000170144|ENST00000392524|HNRNPA3;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;nc|ENSG00000170144|P51991-2|HNRNPA3 107.1870275148908 0.00340162908551068 1 [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F} 9 0 + 82.573 0 0 8.4209 8.4209 90.382 0 0 0 8.384767769392738 42.5404627391503 8.384767769392738 6.962724883926654 0 2.6989700043360187 0 0.4247425010840047 0.2742275032520141 + + [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}N{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}GGS{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}NS{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}G{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}S{M(Oxidation (M))|F}{I|L}K{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}N{M(Oxidation (M))|F}{I|L}K{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{[DA]|[EG]}K{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}G[{M(Oxidation (M))|F}E]K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}K{I|L}{M(Oxidation (M))|F} 8.4209;7.7109;7.1982;6.4881;5.519;4.1082;3.9648;3.9632;3.8631;3.6677 +;-;-;-;-;-;-;-;-;- + 579 NaN NaN 246732.9 NaN 14333 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17847 74.718 NaN 726860 35 0 257840 0.262 -1 0 52 413.1934236862167 824.3722944392334 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17843 335681.84375 0.25308549448395323 63 -1.3067245483398438 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 194053 NaN 14334 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17848 74.721 NaN 299590 35 0 35944 0.261 + 23205 RFLSGIINF 9 58 533.8060609483842 1065.5975689635684 2 533.8058471679688 MULTI HCD FTMS 0 0 0 17843 147279.765625 0.275152026967856 5 -0.129638671875 5 Unmodified _RFLSGIINF_ ENSG00000143228|ENST00000271452|NUF2 34.93206674587334 0.08860942999206235 1 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 8 5 59.686 0 0 5.6011 0 0 132.15642013719963 0 132.15642013719963 0 43.48767215588211 0 0 0 1.5 0 0 0.805462187404089 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 5.6011 - 290 + NaN NaN 129270 NaN 14335 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17849 74.725 NaN 273280 35 0 15956 0.261 + 11213 IYKPVTDFFL 10 78 621.8419269855586 1241.6693010379172 2 621.8422241210938 MULTI HCD FTMS 0 0 0 17843 120630.2578125 0.4275200906303088 3 -0.07547760009765625 6 Unmodified _IYKPVTDFFL_ ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF 51.41523569358685 0.07264263333115425 1 [Y{I|L}]K[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 72.898 0 0 5.8709 5.8709 91.253 0 0 0 21.8740810491245 50.833683842209325 21.8740810491245 24.247425010840047 0 2.004432191740108 1.6989700043360187 0 0 + + [Y{I|L}]K[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YK]{I|L}[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[NV]|[RG]}[{I|L}V]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YN][{I|L}V][{I|L}V]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YK][TP][{I|L}V]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.8709;3.9181;3.7373;1.8483;1.7845 +;-;-;-;- + 1541 NaN NaN 127868.7 NaN 14336 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17850 74.728 NaN 231180 35 0 33523 0.263 + 240 AFDPTSTLL 9 59 482.753191285181 963.491829637162 2 482.7529296875 MULTI HCD FTMS 0 0 0 17843 99988.609375 0.5831559365293676 -1 0.029541015625 7 Unmodified _AFDPTSTLL_ ENSG00000183751|ENST00000568546|TBL3 65.23502041540118 0.010630085227462206 1 TSTPDS{I|L} 7 6 63.48 0 0 6.5885 0 0 244.17895705390782 0 244.17895705390782 0 60.29245436797645 0 0 0 2 0 0.805462187404089 0 TSTPDS{I|L} 6.5885 - 93 NaN NaN 120393.3 NaN 14337 3511 17843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17852 74.733 NaN 2577800 35 0 1136300 0.327 + 27910 TEFRNFIVW 9 79 606.3135830274978 1210.6126131217954 2 606.300048828125 MULTI HCD FTMS 0 0 0 17851 83604.0078125 0.454352978419353 1 -0.022979736328125 1 Unmodified _TEFRNFIVW_ ENSG00000087302|ENST00000261700|RTRAF 22.736283301280096 0.1639198954644489 1 [Y{I|L}]PQ{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V 8 7 44.914 0 0 3.7101 0 0 0 201.06636931069264 201.06636931069264 11.6847792642792 0 0 0 0 0.805462187404089 2 0 0.3494850021680094 [Y{I|L}]PQ{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V 3.7101 - 449 NaN NaN 478113.7 NaN 14338 3512 17851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17853 74.737 NaN 1398000 35 0 159080 0.261 + 13717 KYPLNLYLL 9 95 568.8392548174598 1135.6639567017196 2 568.8394775390625 MULTI HCD FTMS 0 0 0 17851 660105.0625 0.7125559016044056 -1 0.02628326416015625 2 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 96.28474662873226 0.004361282420133734 1 [Y{I|L}]KPN{I|L}Y{I|L}{I|L} 9 3 + 86.009 0 0 7.5734 7.5734 89.07 0 0 0 7.001962355242952 16.478174818886373 7.001962355242952 7.001962355242952 0 1.774227503252014 1.3010299956639813 0 1.416386562212267 [Y{I|L}]KPN{I|L}Y{I|L}{I|L};[YK]{I|L}PN{I|L}Y{I|L}{I|L};[YK]P{I|L}N{I|L}Y{I|L}{I|L};[Y{I|L}]KPGG{I|L}Y{I|L}{I|L};[YK]{I|L}PGG{I|L}Y{I|L}{I|L};[YK]P{I|L}GG{I|L}Y{I|L}{I|L};[Y{I|L}]KPN{I|L}{I|L}Y{I|L};[K{I|L}]YPN{I|L}Y{I|L}{I|L};[Y{I|L}]N[KP]{I|L}Y{I|L}{I|L};[Y{I|L}]VQPKY{I|L}{I|L} 7.5734;6.9569;6.9461;6.7626;6.1461;6.1352;6.069;5.9674;5.965;5.8988 -;-;+;-;-;-;-;-;-;- + 2901 NaN NaN 301877.8 NaN 14339 3512 17851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17854 74.741 NaN 2017500 35 0 278090 0.261 + 35586 YYIFIPSKF 9 80 589.318302735094 1176.622052536988 2 589.318603515625 MULTI HCD FTMS 0 0 0 17851 873954.9375 0.02523355924307892 28 -0.7298049926757812 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 88.95385435242217 0.004553379958619559 1 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 88.638 0 0 7.5333 7.5333 93.345 0 0 0 19.313637641589878 16.478174818886373 16.478174818886373 16.760912590556813 0 2.6549471895720984 1.6989700043360187 0.3494850021680094 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F} 7.5333;6.1088;5.8918;5.8051;5.2985;5.26;4.8594;4.7976;3.874;3.657 -;-;-;-;-;-;-;-;-;- 1489 NaN NaN 389118.2 NaN 14340 3512 17851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17855 74.744 NaN 1588300 35 0 662490 0.264 + 17219 LYNQELKKW 9 49 407.8927538026981 1220.6564320082944 3 407.8930969238281 MULTI HCD FTMS 0 0 0 17851 384127.96875 0.9331114136437567 1 -0.022979736328125 4 Unmodified _LYNQELKKW_ REV__ENST00000292535.11_1_7:101747723-101758522:+|nuORF 2.735195868890462 0.3302822318919627 1 [Y{I|L}]N 3 -1 21.171 0 0 1.7344 0 0 0 827.4421735456568 827.4421735456568 8.696662315049934 0 0 0 0 0 1.2218487496163564 0 0 [Y{I|L}]N 1.7344 + + 7 NaN NaN 329982.6 NaN 14341 3512 17851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17856 74.748 NaN 676380 35 0 72777 0.261 -1 IMGIENICEL 10 92 575.7790029674118 1149.5434530016234 2 575.7928466796875 MULTI HCD FTMS 0 0 0 17851 77554.8828125 0.08590205532372645 40 -1.0254135131835938 5 Oxidation (M) _IM(Oxidation (M))GIENICEL_ ENSG00000175745|ENST00000327111|NR2F1;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2 21.536976647645854 0.3096624038397699 1 [YT]VY{M(Oxidation (M))|F}TM{I|L} 8 -1 48.256 0 0 4.1979 0 0 0 128.04374494180357 128.04374494180357 19.962991496838676 0 0 0 0 0.3494850021680094 1.0969100130080565 1.3851518780601924 0 [YT]VY{M(Oxidation (M))|F}TM{I|L} 4.1979 - 3578 NaN NaN 194052.8 NaN 14342 3512 17851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17857 74.751 NaN 464140 35 0 24009 0.261 + 27223 SYNNFFRMF 9 98 613.276194093433 1224.537835253666 2 613.27685546875 MULTI HCD FTMS 0 0 0 17851 230077.1875 0.13325853328680504 14 -0.37125396728515625 6 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 106.94017166704063 0.003441928997083001 1 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}SPE{M(Oxidation (M))|F} 7 7 65.226 0 0 5.3266 0 0 296.1190663068375 0 296.1190663068375 0 48.354050008593546 0 0 0 1.6861818737241734 0 0.7614393726401688 0.3494850021680094 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}SPE{M(Oxidation (M))|F} 5.3266 - 444 NaN NaN 152105.5 NaN 14343 3512 17851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17859 74.756 NaN 2022900 35 0 261910 0.327 + 21536 PYLFHVVTF 9 110 561.8029047975507 1121.5912566619013 2 561.8031616210938 MULTI HCD FTMS 0 0 0 17858 1307094.25 0.40154824548434803 5 -0.13939666748046875 1 Unmodified _PYLFHVVTF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 189.49234813286833 4.2663325471414313E-13 1 PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F} 9 0 + 112.59 0 0 10.038 10.038 94.622 0 0 0 70.55339660620689 14.973024840566467 14.973024840566467 9.336068845642203 0 3.3182503180159344 1.5228787452803376 2.0356668758921828 0 + + PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HTVV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HTVV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VH{I|L}{M(Oxidation (M))|F}YP;{[TV]|[{I|L}S]}V{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}YP;{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VH{M(Oxidation (M))|F}{I|L}YP 10.038;9.2061;8.0068;7.8597;6.6996;6.6604;5.3532;3.8092;3.5925;3.2998 +;+;-;-;-;-;-;-;-;- + 1705 + NaN NaN 399379.7 NaN 14344 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17860 74.76 NaN 258450 35 0 25949 0.263 -1 0 64 435.250960108541 868.487367283882 2 435.2510986328125 MULTI HCD FTMS 0 0 0 17858 230745.421875 0.5556333261996546 30 -0.7952957153320312 2 NaN NaN 1 V 1 -1 5.0886 0 0 0.58592 0 0 542.2926479008727 224.09771143131096 766.3903593321836 0 0 0 0 0 0.5 0 0 0 V 0.58592 - 11 + NaN NaN 125130 NaN 14345 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17861 74.764 NaN 476190 35 0 37967 0.261 + 6362 FPFYYEIKM 9 81 619.3017080070932 1236.5888630809864 2 619.3014526367188 MULTI HCD FTMS 0 0 0 17858 267805.6875 0.460672312706945 -5 0.1311492919921875 3 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 96.36657018975838 0.004359138328518304 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM 9 0 + 98.643 0 0 7.977 7.977 89.213 0 0 0 17.86098023303616 57.123118091426974 17.86098023303616 6.00833760139686 0 2.6237125054200234 1.6989700043360187 1.079689690656103 0.3807196863200844 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYEK{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YEK{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[YE]{M(Oxidation (M))|F}{I|L}KM;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}YNKM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}KY{M(Oxidation (M))|F}PE 7.977;7.4912;6.7217;6.2358;6.0641;5.9977;5.9094;5.7083;5.4619;5.3658 +;-;-;-;-;+;-;-;-;- + 1909 NaN NaN 154061.8 NaN 14346 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17862 74.767 NaN 543700 35 0 54189 0.261 + 22131 QIPELPDPSL 10 82 554.7978478160826 1107.581142698965 2 554.7979736328125 MULTI HCD FTMS 0 0 0 17858 110008.1328125 0.9025252494499842 1 -0.026214599609375 4 Unmodified _QIPELPDPSL_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 78.06048673739656 0.008034375046376557 1 [Q{I|L}][EP]{I|L}PDPS{I|L} 10 0 + 54.534 0 0 4.9237 4.9237 82.149 0 0 0 1.9359712920061511 12.218939792027115 1.9359712920061511 1.9359712920061511 0 2.385151878060192 0.9208187539523752 0.3807196863200844 0.5994850021680094 + + [Q{I|L}][EP]{I|L}PDPS{I|L};[EP]{I|L}Q{I|L}PDPS{I|L};[EP]{I|L}[AG]{I|L}PDPS{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[NV]|[RG]}A[NG]Q{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}M[PG]Q{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[RE]|[WV]}Q{I|L} 4.9237;4.7489;3.3802;1.6854;1.5006;1.4545 +;-;-;-;-;- + 872 NaN NaN 164888 NaN 14347 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17863 74.771 NaN 323150 35 0 28618 0.261 + 23713 RQPYIWLTI 9 67 595.3401136482562 1188.6656743633123 2 596.3314208984375 MULTI HCD FTMS 0 0 0 17858 24371.328125 0.8034059759102857 -1 0.022979736328125 5 Unmodified _RQPYIWLTI_ ENSG00000081923|ENST00000648908|ATP8B1 10.073929032068715 0.27331982688540024 1 YY 2 8 10.969 0 0 0.92281 0 0 163.09646288700156 696.4194045146397 859.5158674016413 0 0 0 0 0 0 0 0 0 YY 0.92281 - 126 + NaN NaN 129325.8 NaN 14348 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17864 74.774 NaN 142980 35 0 10789 0.264 + -1 IGSSNGCQ 8 44 404.16961921983085 806.3246855064617 2 404.1699523925781 MULTI HCD FTMS 0 0 0 17858 72163.296875 0.007004651228762176 102 -2.17974853515625 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IGSSNGCQ_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|98|2|sense 2.302733041254933 0.5385759549224092 1 E 1 -1 6.9897 0 0 0.86686 0 0 373.1666691899297 301.10202966861567 674.2686988585453 0 0 0 0 0 0 0 0 0 E 0.86686 - 2 + NaN NaN 103393.3 NaN 14349 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17865 74.777 NaN 126690 35 0 7303.5 0.261 + 23108 RETRAAPL 8 62 457.2642318855019 912.5139108378038 2 457.26458740234375 MULTI HCD FTMS 0 0 0 17858 110724.8125 0.5992009738216105 14 -0.3842315673828125 7 Unmodified _RETRAAPL_ ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF;ENST00000606557.1_1_20:17948856-17948946:-|nuORF 2.302733041254933 0.5385759549224092 1 YW 2 8 14.693 0 0 1.6101 0 0 545.3603901852632 0 545.3603901852632 0 10.255762612236905 0 0 0 0 0 0 0 YW 1.6101 - 13 + NaN NaN 118339 NaN 14350 3513 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17867 74.782 NaN 1272100 35 0 113550 0.327 + 17005 LYIRLCMKY 9 89 601.8239457638567 1201.6333385945134 2 602.3280029296875 MULTI HCD FTMS 0 0 0 17866 352085.65625 0.43433841148687474 8 -0.21762847900390625 1 Unmodified _LYIRLCMKY_ REV__ENSG00000127191|ENST00000247668|TRAF2;REV__nc|ENSG00000127191|Q12933-2|TRAF2;REV__nc|ENSG00000127191|Q12933-3|TRAF2;REV__nc|ENSG00000127191|Q12933-4|TRAF2 16.942295170755138 0.21397866736869717 1 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 27.447 0 0 2.2842 0 0 0 775.427488540805 775.427488540805 13.034824580405342 0 0 0 0 0 2 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.2842 - 612 NaN NaN 277183.1 NaN 14351 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17868 74.786 NaN 1060300 35 0 100690 0.261 + 7008 FPYEYSYGL 9 93 569.7584936094011 1137.502434285602 2 569.7589721679688 MULTI HCD FTMS 0 0 0 17866 112020.5859375 0.8048897835953909 1 -0.03125 2 Unmodified _FPYEYSYGL_ ENSG00000184743|ENST00000398868|ATL3 36.12702656103203 0.08312389501731911 1 YSYG{I|L} 5 4 45.767 0 0 4.0235 0 0 536.2238636701187 0 536.2238636701187 0 14.845872408998453 0 0 0 1.805462187404089 0 0 0 + YSYG{I|L} 4.0235 + + 1575 NaN NaN 245369.8 NaN 14352 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17869 74.79 NaN 239380 35 0 29752 0.261 + 28050 TGIFLPILR 9 64 515.3262387741721 1028.6379246151441 2 515.3263549804688 MULTI HCD FTMS 0 0 0 17866 35354.1171875 0.5291348049194639 1 -0.03125 3 Unmodified _TGIFLPILR_ ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7 18.1463463914782 0.20357593197100715 1 CD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 7 32.167 0 0 3.1271 0 0 132.2054446615677 268.1302584283813 400.335703089949 0 0 0 0 0 1.5 0 0 0 CD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.1271 - 172 + NaN NaN 108975.2 NaN 14353 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17870 74.793 NaN 195660 35 0 23498 0.261 + 31181 VVFWFLIGW 9 70 583.8233366339339 1165.6321203346677 2 583.8232421875 MULTI HCD FTMS 0 0 0 17866 54253.07421875 0.19882980800725641 18 -0.47818756103515625 4 Unmodified _VVFWFLIGW_ ENSG00000151025|ENST00000376351|GPR158 14.581692164780916 0.23437375358055648 1 {I|L}G{I|L}W 4 7 39.24 0 0 3.3664 0 0 678.3583851544937 0 678.3583851544937 0 28.2711470149615 0 0 0 1.3807196863200843 0 0 0 {I|L}G{I|L}W 3.3664 - 162 NaN NaN 114356.2 NaN 14354 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17871 74.797 NaN 138970 35 0 21683 0.261 -1 DYMYLRQLF 9 48 632.805227846362 1263.5959027595238 2 632.8053588867188 MULTI HCD FTMS 0 0 0 17866 20466.775390625 0.34146815231809186 -2 0.0491943359375 5 Oxidation (M) _DYM(Oxidation (M))YLRQLF_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 20.41453444215458 0.18397929046831515 1 KRQ{I|L}{M(Oxidation (M))|F} 5 -1 33.188 0 0 2.6264 0 0 573.1676502912125 0 573.1676502912125 0 26.197887582883936 0 0 0 0.5 0 0 0 KRQ{I|L}{M(Oxidation (M))|F} 2.6264 - 29 NaN NaN 103838.6 NaN 14355 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17872 74.8 NaN 193770 35 0 39962 0.264 + 9 AAFDPEGH 8 44 422.18663450605396 NaN 0 422.1990966796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _AAFDPEGH_ ENSG00000134769|ENST00000444659|DTNA;nc|ENSG00000134769|Q9Y4J8-12|DTNA;nc|ENSG00000134769|Q9Y4J8-13|DTNA;nc|ENSG00000134769|Q9Y4J8-14|DTNA;nc|ENSG00000134769|Q9Y4J8-15|DTNA;nc|ENSG00000134769|Q9Y4J8-16|DTNA;nc|ENSG00000134769|Q9Y4J8-2|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-5|DTNA;nc|ENSG00000134769|Q9Y4J8-7|DTNA;nc|ENSG00000134769|Q9Y4J8-9|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110958.1 NaN 14356 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17873 74.803 NaN 90222 35 0 10889 0.261 + 17742 MDSLADYAL 9 42 499.72848813651586 997.4424233398317 2 499.728515625 MULTI HCD FTMS 0 0 0 17866 9188.521484375 0.20948299431199344 6 -0.162139892578125 7 Unmodified _MDSLADYAL_ ENSG00000167800|ENST00000335385|TBX10 7.910154910731844 0.2910521888787154 1 A{I|L} 2 7 24.464 0 0 2.4527 0 0 795.3111439435562 0 795.3111439435562 0 17.78151250383644 0 0 0 0.3494850021680094 0 0 0 + A{I|L} 2.4527 + + 21 NaN NaN 94837.6 NaN 14357 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17874 74.808 NaN 109330 35 0 11598 0.261 + 1073 AYHEVPYTTSF 11 44 438.8715251353992 1313.5927460063976 3 438.87103271484375 MULTI HCD FTMS 0 0 0 17866 39986.0234375 0.20915904774195596 6 -0.162139892578125 8 Unmodified _AYHEVPYTTSF_ ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF 4.715918219556657 0.3982382512160552 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W 3 9 28.222 0 0 2.1484 0 0 0 890.3885278269632 890.3885278269632 7.73723468385537 0 0 0 0 0.5 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W 2.1484 - 19 NaN NaN 96270 NaN 14358 3514 17866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17876 74.813 NaN 671140 35 0 59849 0.327 + 19759 NYAWVYYHL 9 106 614.7929287250602 1227.5713045169202 2 614.7926025390625 MULTI HCD FTMS 0 0 0 17875 200840.375 0.003579392302160884 204 -4.9175262451171875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 1 [YN]AWVYYH{I|L} 9 0 + 104.41 0 0 8.5052 8.5052 96.245 0 0 0 21.197887582883936 16.478174818886373 16.478174818886373 31.07576458622684 0 2.8494850021680094 1.6989700043360187 0 1.6861818737241734 + + [YN]AWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YG]QWVYYH{I|L};[YG]GAWVYYH{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RYVWQ{[DS]|[MA]|[CV]|TT};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RYVWAG{[DS]|[MA]|[CV]|TT};[YN]AWV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{[CT]|[{M(Oxidation (M))|F}G]};{[DS]|[MA]|[CV]|TT}[KT]YVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AW[KS]{[QG]|[NA]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YN]A[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 8.5052;5.9738;5.5892;5.4651;4.7741;4.6501;4.5783;4.4983;3.8873;3.8723 +;-;-;-;-;-;-;-;-;- + 2797 NaN NaN 184141 NaN 14359 3515 17875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17877 74.818 NaN 301980 35 0 39751 0.261 + 5221 FFDAELSQM 9 66 544.2418377696521 1086.469122606104 2 544.2421264648438 MULTI HCD FTMS 0 0 0 17875 78862.0546875 0.03355600078186083 26 -0.6821365356445312 2 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 57.72198328787511 0.020768266150574023 1 E{I|L}SQM 5 4 61.74 0 0 5.6827 0 0 480.2013416974625 0 480.2013416974625 0 45.08478465655138 0 0 0 1.75 0 1.079689690656103 0 + E{I|L}SQM 5.6827 + + 229 NaN NaN 126179.6 NaN 14360 3515 17875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17878 74.821 NaN 160560 35 0 7833.8 0.261 + 25121 SAFSSWEEL 9 61 528.2374240641733 1054.4602951951465 2 528.2373046875 MULTI HCD FTMS 0 0 0 17875 46304.4375 0.8105428300419127 -3 0.0804443359375 3 Unmodified _SAFSSWEEL_ ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3470835-3470958:-|nuORF 39.94969957227396 0.06557568441294001 1 SSWEE{I|L} 6 3 42.528 0 0 4.0332 0 0 305.137498924025 0 305.137498924025 0 30.649123126898274 0 0 0 1.610924374808178 0 0 0 + SSWEE{I|L} 4.0332 + + 140 NaN NaN 102793.9 NaN 14361 3515 17875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17879 74.825 NaN 62413 35 0 7269.7 0.261 + 14477 LEYLVIGF 8 25 477.26896352824804 952.5233741232961 2 477.2690734863281 MULTI HCD FTMS 0 0 0 17875 6883.314453125 0.18531363991915784 1 -0.02291107177734375 4 Unmodified _LEYLVIGF_ REV__ENSG00000157764|ENST00000646891|BRAF;REV__ENST00000445336.2_1_X:74804463-74804925:+|nuORF;REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7837 0 0 787.4442705850133 0 787.4442705850133 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7837 + + 4 + NaN NaN 93973.3 NaN 14362 3515 17875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17880 74.828 NaN 60020 35 0 4136.3 0.261 -1 RWKILRMVC 9 44 631.3537033686911 NaN 0 631.3535766601562 PEAK HCD FTMS 0 0 0 17875 20390.40625 0.6757405441750378 1 -0.02291107177734375 5 Carbamidomethyl (C) _RWKILRMVC(Carbamidomethyl (C))_ ENST00000520849.5_1_8:89341227-89341371:+|nuORF 2.0597508629832335 0.2852655770354268 1 N 1 -1 5.4846 0 0 0.43504 0 0 163.18450527078204 980.4365328424436 1143.6210381132257 0 0 0 0 0 0 0 0 0 N 0.43504 - 7 + NaN NaN 88758.2 NaN 14363 3515 17875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17881 74.831 NaN 108790 35 0 13184 0.264 + 30054 VFSLHEDNHYR 11 52 472.8932203562122 1415.6578316688367 3 473.2274169921875 MULTI HCD FTMS 0 0 0 17875 20125.75390625 0.5473939097484101 5 -0.130889892578125 6 Unmodified _VFSLHEDNHYR_ ENSG00000163625|ENST00000295888|WDFY3;nc|ENSG00000163625|Q8IZQ1-2|WDFY3 6.623454094837244 0.3898724468670146 1 [{M(Oxidation (M))|F}V]E 3 8 14.705 0 0 1.0387 0 0 0 1037.456428953929 1037.456428953929 14.704999916446797 0 0 0 0 0.4247425010840047 0 0 0 [{M(Oxidation (M))|F}V]E 1.0387 - 4 + NaN NaN 98920.7 NaN 14364 3515 17875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17883 74.836 NaN 1109200 35 0 182530 0.327 + 28500 TPQFPDMIL 9 89 539.2679605796511 1076.5213682261021 2 539.26806640625 MULTI HCD FTMS 0 0 0 17882 588550.6875 0.08154854450116403 27 -0.7149200439453125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 55.50274090549119 0.023872834264864425 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 49.888 0 0 4.6342 4.6342 87.691 0 0 0 2.5436480540244943 32.89822339323312 2.5436480540244943 13.967137774837603 0 1.774227503252014 0 0.8737125054200234 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TP]PD{M(Oxidation (M))|F}{I|L}{I|L};[VP][YN]PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]D{M(Oxidation (M))|F}{I|L}{I|L} 4.6342;3.3367;3.233;3.0057 -;-;-;- 652 NaN NaN 245541.6 NaN 14365 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17884 74.841 NaN 717510 35 0 109730 0.261 + 9087 HPFFNDFTF 9 76 586.2638455887189 1170.5131382442378 2 586.264404296875 MULTI HCD FTMS 0 0 0 17882 458177.75 0.9076791650511198 -1 0.02291107177734375 2 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 118.89474601620944 0.0014903111061077812 1 T{M(Oxidation (M))|F}D[QT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8 5 62.126 0 0 5.3076 0 0 165.07776163711884 0 165.07776163711884 0 35.92851236038762 0 0 0 0 0 1.7786596949921218 0.6203715150305281 T{M(Oxidation (M))|F}D[QT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.3076 - 1290 + NaN NaN 194547.1 NaN 14366 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17885 74.844 NaN 1209600 35 0 113830 0.261 + 35963 YYVRAWVVF 9 99 601.8239457638567 1201.6333385945134 2 602.328125 MULTI HCD FTMS 0 0 0 17882 399547.03125 0.4928875112827653 10 -0.2678985595703125 3 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 23.1484247019978 0.1603590852062899 1 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[KS]V 8 7 28.166 0 0 2.344 0 0 0 261.1303136360395 261.1303136360395 11.438937347570075 0 0 0 0 0.6549471895720984 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[KS]V 2.344 - 1235 NaN NaN 259854.4 NaN 14367 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17886 74.848 NaN 509250 35 0 29186 0.261 + 29987 VFISSSLNTF 10 89 557.7923008468088 1113.5700487604174 2 557.793212890625 MULTI HCD FTMS 0 0 0 17882 136613.328125 0.8636117642584913 -3 0.08037567138671875 4 Unmodified _VFISSSLNTF_ ENSG00000105254|ENST00000221855|TBCB;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENST00000481742.1_1_19:36606435-36607215:+|nuORF 132.37960578797484 1.4931105950829253E-05 1 [{I|L}V]{M(Oxidation (M))|F}SSS{I|L}NT{M(Oxidation (M))|F} 10 2 + 79.335 0 0 7.1244 7.1244 86.603 0 0 0 70.38258591404052 10.41177952372989 10.41177952372989 3.1417922443672666 0 2.7856668758921828 0 1.4645591924310528 0 [{I|L}V]{M(Oxidation (M))|F}SSS{I|L}NT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{I|L}SSS{I|L}NT{M(Oxidation (M))|F};[{I|L}V]{M(Oxidation (M))|F}SSS{I|L}GGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{I|L}SSS{I|L}GGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{I|L}SSS[QT]V{M(Oxidation (M))|F};[{I|L}V]{M(Oxidation (M))|F}SSS{I|L}{[SA]|[TG]}G{M(Oxidation (M))|F};[YV]{I|L}ASS{I|L}NT{M(Oxidation (M))|F};[YV]{I|L}ASS{I|L}GGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VVSS{I|L}NT{M(Oxidation (M))|F};[YV]{I|L}ASS[QT]V{M(Oxidation (M))|F} 7.1244;6.8422;6.3014;6.0193;5.5549;5.501;5.3886;4.5656;4.2208;4.1012 -;+;-;-;-;-;-;-;-;- + 1207 + NaN NaN 176934.6 NaN 14368 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17887 74.851 NaN 403350 35 0 28039 0.261 -1 0 76 497.275780052096 496.26850358549603 1 497.2647705078125 MULTI HCD FTMS 0 0 0 17882 18424.935546875 0.08129250817839824 10 -0.2678985595703125 5 NaN NaN 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 4 -1 + 26.911 0 0 5.4227 5.4227 90.665 0 0 0 2.843181179205061 19.463950151760656 2.843181179205061 26.91122510072759 0 0.8494850021680094 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 5.4227 - 28 NaN NaN 140319.2 NaN 14369 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17888 74.854 NaN 295710 35 0 18952 0.261 + 34071 YNLARLYEAM 10 81 622.3095095910095 NaN 0 622.29345703125 PEAK HCD FTMS 0 0 0 17882 27172.744140625 0.4313885871353198 4 -0.10797882080078125 6 Unmodified _YNLARLYEAM_ ENSG00000198730|ENST00000361367|CTR9 8.745405648335112 0.33269943387702366 1 N{I|L} 2 8 8.5835 0 0 0.69077 0 0 739.3421199126846 273.12419755291285 1012.4663174655974 0 0 0 0 0 0 0 0 0 + N{I|L} 0.69077 + + 74 + NaN NaN 128520.4 NaN 14370 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17889 74.858 NaN 285420 35 0 57295 0.263 + 15658 LPEGVEPLL 9 50 483.77910313120157 965.5436533292032 2 483.77880859375 MULTI HCD FTMS 0 0 0 17882 120571.4375 0.6267558279057373 -2 0.05416107177734375 7 Unmodified _LPEGVEPLL_ ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN 11.640296217721598 0.25978676193971967 1 CP{I|L}{I|L} 4 6 34.553 0 0 3.5786 0 0 521.3007069318375 0 521.3007069318375 0 26.765997036641593 0 0 0 0.5 0 0 0 CP{I|L}{I|L} 3.5786 - 18 NaN NaN 126563.7 NaN 14371 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17890 74.861 NaN 260900 35 0 36167 0.261 -1 LISMECYDI 9 65 572.2566795742051 1142.4988062152102 2 572.2565307617188 MULTI HCD FTMS 0 0 0 17882 55552.41796875 0.1977911217058964 -5 0.129638671875 8 Carbamidomethyl (C) _LISMEC(Carbamidomethyl (C))YDI_ ENSG00000261609|ENST00000648994|GAN 18.13498045792455 0.20367413111508956 1 {I|L}{I|L}{I|L} 3 -1 22.167 0 0 1.9402 0 0 785.2372223152204 0 785.2372223152204 0 13.214562785677655 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L}{I|L} 1.9402 - 16 NaN NaN 123657.1 NaN 14372 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17891 74.864 NaN 360180 35 0 45592 0.261 + 3984 ERETITFF 8 76 521.7636738518843 1041.5127947705685 2 522.2510375976562 MULTI HCD FTMS 0 0 0 17882 17191.8828125 0.5849002504263201 -1 0.02291107177734375 9 Unmodified _ERETITFF_ ENSG00000156687|ENST00000404895|UNC5D;nc|ENSG00000156687|Q6UXZ4-2|UNC5D;UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant 9.347437153973935 0.5250182646323369 1 WN{I|L} 3 7 27.446 0 0 2.6352 0 0 610.2952748029312 0 610.2952748029312 0 2.7531870460262624 0 0 0 0.6643943297944485 0 0 0 WN{I|L} 2.6352 - 71 NaN NaN 136755 NaN 14373 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17892 74.868 NaN 91308 35 0 6051.5 0.261 + 1064 AYGSLFNTI 9 47 493.25298664916056 984.4914203651211 2 493.2530212402344 MULTI HCD FTMS 0 0 0 17882 62738.03515625 0.16133755738500377 8 -0.2056732177734375 10 Unmodified _AYGSLFNTI_ ENSG00000137944|ENST00000260508|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-2|KYAT3;nc|ENSG00000137944|Q6YP21-3|KYAT3 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.3305 0 0 819.413201836604 0 819.413201836604 0 -1.8495564253589691 -1.8495564253589691 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3305 + + 23 + NaN NaN 87957.8 NaN 14374 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17893 74.871 NaN 414260 35 0 89636 0.261 -1 MCAPVMVEL 9 67 512.729602771995 1023.4446526107901 2 512.7296142578125 MULTI HCD FTMS 0 0 0 17882 95353.9765625 0.40756377134638433 4 -0.10797882080078125 11 2 Oxidation (M) _M(Oxidation (M))CAPVM(Oxidation (M))VEL_ ENSG00000100142|ENST00000442738|POLR2F 11.640296217721598 0.25978676193971967 1 {[ET]|[MV]}A{M(Oxidation (M))|F}[VS]EE{I|L} 9 -1 + 20.04 0 0 1.9581 1.9581 86.598 0 0 0 -1.4755409084695934 4.365677915492514 -1.4755409084695934 20.039777962019873 0 0.566901560044258 0 0.4247425010840047 0 {[ET]|[MV]}A{M(Oxidation (M))|F}[VS]EE{I|L} 1.9581 - 112 + NaN NaN 149069.9 NaN 14375 3516 17882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17895 74.876 NaN 8956100 35 0 3318900 0.327 + 17275 LYPQFMFHL 9 69 606.2992298592186 1210.583906785237 2 607.3016967773438 MULTI HCD FTMS 0 0 0 17894 2550412.25 0.5274219203099167 -7 0.198638916015625 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 77.98433622928108 0.006504613272346738 1 [Y{I|L}]PQ{M(Oxidation (M))|F}[CS]PY 9 4 58.57 0 0 4.8382 0 0 0 109.0564950864879 109.0564950864879 45.07544854914718 0 0 0 0 1.6382104921644451 1.6989700043360187 0.6747425010840047 0.6109243748081782 [Y{I|L}]PQ{M(Oxidation (M))|F}[CS]PY 4.8382 - 694 NaN NaN 884121.8 NaN 14376 3517 17894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17896 74.88 NaN 531950 35 0 78476 0.263 + 21783 QAIGIEVEL 9 66 486.2740691727834 970.5335854123668 2 486.27410888671875 MULTI HCD FTMS 0 0 0 17894 801520.1875 0.4361189856612151 5 -0.1240081787109375 2 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 78.7280429016045 0.006263961847259105 1 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 53.54 0 0 5.5166 5.5166 82.941 0 0 0 3.996294548824366 41.51364130679191 3.996294548824366 1.5220444404238975 0 1.4291746928241125 0 1.1549471895720984 0.6307196863200843 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}QQE{I|L};[VP]{[QS]|[NT]}{[TV]|[{I|L}S]}VE{I|L};{[TV]|[{I|L}S]}[NP]{[TV]|[{I|L}S]}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}V]QQE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[PA]{[TV]|[{I|L}S]}VE{I|L} 5.5166;5.3598;5.3071;4.4271;4.2821;4.1985;3.8733;3.8068;3.736;3.7069 -;-;-;-;-;-;-;-;-;- 273 NaN NaN 163560.9 NaN 14377 3517 17894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17897 74.884 NaN 580180 35 0 67826 0.261 + 26652 SYADQMFLL 9 74 552.2575892312469 1102.5006255292938 2 552.2579345703125 MULTI HCD FTMS 0 0 0 17894 262418.1875 0.1333938685518428 9 -0.2284393310546875 3 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 70.33199760932243 0.0089807860198535 1 DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6 3 65.698 0 0 5.959 0 0 321.1318531720719 0 321.1318531720719 0 49.49962073888797 0 0 0 1.805462187404089 0 0.9947026752325154 0.3054621874040891 + DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5.959 + + 441 NaN NaN 164876.5 NaN 14378 3517 17894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17898 74.887 NaN 541260 35 0 47346 0.261 + 12242 KLFIGGLSF 9 73 491.29198539636764 980.5694178595353 2 491.2919921875 MULTI HCD FTMS 0 0 0 17894 261949.109375 0.4198274116017484 4 -0.10462188720703125 4 Unmodified _KLFIGGLSF_ AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000170144|ENST00000392524|HNRNPA3;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;nc|ENSG00000170144|P51991-2|HNRNPA3 69.10491478415734 0.009377850133389008 1 [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F} 9 0 + 65.878 0 0 6.7184 6.7184 85.154 0 0 0 7.024597658517038 49.94854431422094 7.024597658517038 1.706962271689747 0 2.16944517631652 0 0.3494850021680094 0.28872548999643577 + + [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}N{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}E[K{I|L}] 6.7184;6.5443;1.4603 +;-;- + 150 NaN NaN 157995.2 NaN 14379 3517 17894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17899 74.89 NaN 781440 35 0 250510 0.261 -1 0 57 413.1934236862167 824.3722944392334 2 413.1935119628906 MULTI HCD FTMS 0 0 0 17894 306791.75 0.2313039659367855 69 -1.2811279296875 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.42 0 0 1.3853 0 0 659.293267194896 0 659.293267194896 0 8.321039490384035 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3853 - 4 + NaN NaN 199094 NaN 14380 3517 17894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17901 74.895 NaN 16196000 35 0 7553200 0.327 + 17276 LYPQFMFHL 9 69 606.2992298592186 1210.583906785237 2 606.3004150390625 MULTI HCD FTMS 0 0 0 17900 12037169 0.7519424386368425 -6 0.16237640380859375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 117.59872219059416 0.0017018906413822257 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 96.01 0 0 7.9309 7.9309 93.768 0 0 0 72.645228064086 5.737862141609185 5.737862141609185 15.950528104279016 0 2.754432191740108 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}[HM]Y{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L}Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}[HM]Y{I|L} 7.9309;6.6133;6.6034;5.584;4.967;4.86;4.447;3.9376;3.5793;3.2137 +;+;-;-;-;-;-;-;-;- + 780 + NaN NaN 907469.1 NaN 14381 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17902 74.9 NaN 1223300 35 0 162460 0.261 + 35587 YYIFIPSKF 9 70 589.318302735094 1176.622052536988 2 589.3186645507812 MULTI HCD FTMS 0 0 0 17900 688215.0625 0.01987072194048107 34 -0.863037109375 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 60.07390631473393 0.0174780869009295 1 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 78.822 0 0 6.699 6.699 91.591 0 0 0 19.471580313422194 16.478174818886373 16.478174818886373 15.511525224473814 0 2.1989700043360187 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}[{M(Oxidation (M))|F}V][TP]K{M(Oxidation (M))|F};[RH]SP{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{M(Oxidation (M))|F} 6.699;5.3807;5.0442;4.8078;3.9997;2.7378;1.7069 -;-;-;-;-;-;- 842 NaN NaN 265658.9 NaN 14382 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17903 74.903 NaN 663220 35 0 56492 0.261 + 6363 FPFYYEIKM 9 82 619.3017080070932 1236.5888630809864 2 619.3017578125 MULTI HCD FTMS 0 0 0 17900 581336.625 1 0 0 3 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 96.36657018975838 0.004359138328518304 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM 9 0 + 103.61 0 0 8.3789 8.3789 89.914 0 0 0 18.16946789630613 61.575221787320515 18.16946789630613 6.00833760139686 0 2.6549471895720984 1.6989700043360187 1.1237125054200234 0.3252574989159953 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}KM;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}KYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[YE]{M(Oxidation (M))|F}{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y{I|L}[YE]KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}KY{M(Oxidation (M))|F}PE;[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}YE{I|L}KM 8.3789;7.893;6.1952;6.0735;5.8724;5.8517;5.8079;5.5711;5.5046;5.3452 +;-;+;-;-;-;-;-;-;- + 1840 NaN NaN 176509.7 NaN 14383 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17904 74.907 NaN 1285600 35 0 126450 0.261 + 2277 DLPKYNFLL 9 109 561.8134934720069 1121.6124340108138 2 561.8028564453125 MULTI HCD FTMS 0 0 0 17900 173666.3125 0.6807538743884044 -1 0.019561767578125 4 Unmodified _DLPKYNFLL_ REV__ENSG00000106733|ENST00000361092|NMRK1 32.78568957990786 0.09846250359632436 1 PY{I|L}{M(Oxidation (M))|F}[HV]VT 8 -1 74.237 0 0 6.6188 0 0 0 162.05617700748283 162.05617700748283 17.03978027022262 0 0 0 0 0.9247425010840047 1.5228787452803376 1.9406140654642812 0 PY{I|L}{M(Oxidation (M))|F}[HV]VT 6.6188 - 2060 + NaN NaN 281241.9 NaN 14384 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17905 74.91 NaN 464210 35 0 57920 0.261 + 13718 KYPLNLYLL 9 77 568.8392548174598 1135.6639567017196 2 568.8394165039062 MULTI HCD FTMS 0 0 0 17900 304522.125 0.32871894136982854 5 -0.130615234375 5 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 71.13359017698441 0.008721403657255008 1 [Y{I|L}][KP]N{I|L}Y{I|L}{I|L} 9 2 + 76.36 0 0 6.7239 6.7239 87.556 0 0 0 7.001962355242952 16.478174818886373 7.001962355242952 7.001962355242952 0 1.8494850021680094 1.3010299956639813 0 1.0752574989159953 [Y{I|L}][KP]N{I|L}Y{I|L}{I|L};[YK][{I|L}P]N{I|L}Y{I|L}{I|L};[Y{I|L}][KP]GG{I|L}Y{I|L}{I|L};[YK][{I|L}P]GG{I|L}Y{I|L}{I|L};[K{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{I|L}Y{I|L}{I|L};[K{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{I|L}Y{I|L}{I|L} 6.7239;6.1073;5.913;5.2965;5.0481;4.2373 -;+;-;-;-;- + 1143 NaN NaN 154587.7 NaN 14385 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17906 74.913 NaN 784500 35 0 69611 0.261 + 11030 IYESVSPLT 9 82 504.7662927140409 1007.5180324948818 2 504.7843322753906 MULTI HCD FTMS 0 0 0 17900 33905.4921875 0.3399304818794597 5 -0.130615234375 6 Unmodified _IYESVSPLT_ REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|19 23.1484247019978 0.1603590852062899 1 M{I|L}TADM{I|L} 7 -1 53.519 0 0 5.3119 0 0 0 229.11931787662346 229.11931787662346 20.15373030631185 0 0 0 0 0.3807196863200844 0 1.6549471895720984 0 M{I|L}TADM{I|L} 5.3119 - 790 + NaN NaN 212626.9 NaN 14386 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17907 74.917 NaN 256410 35 0 23990 0.261 -1 0 72 435.250960108541 868.487367283882 2 435.2508544921875 MULTI HCD FTMS 0 0 0 17900 280017.375 0.6742798370631637 35 -0.87567138671875 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.3349 0 0 703.4085231450133 0 703.4085231450133 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3349 - 8 + NaN NaN 125203 NaN 14387 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17908 74.92 NaN 626470 35 0 68181 0.261 + 27006 SYLQQNGVQN 10 96 575.7790029674118 1149.5434530016234 2 575.7929077148438 MULTI HCD FTMS 0 0 0 17900 72888.7265625 0.08073368425796491 46 -1.018218994140625 8 Unmodified _SYLQQNGVQN_ CUL5-ATM|1|fusion;CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5 13.042465956692817 0.38911719078024076 1 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 9 45.372 0 0 3.947 0 0 0 128.0435770437122 128.0435770437122 12.113766268647872 0 0 0 0 0.3252574989159953 1.154901959985743 0.9916440611282626 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 3.947 - 3935 NaN NaN 182227.4 NaN 14388 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17909 74.923 NaN 482700 35 0 177110 0.264 + 32801 WSNLISKLNF 10 57 407.8927538026981 1220.6564320082944 3 407.8930358886719 MULTI HCD FTMS 0 0 0 17900 175191.09375 0.42556861891316894 7 -0.1827545166015625 9 Unmodified _WSNLISKLNF_ REV__ENSG00000253309|ENST00000681248|SERPINE3;REV__nc|ENSG00000253309|A8MV23|SERPINE3 1.9063754702782614 0.46521295622613185 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.0219 0 0 1055.577221658488 0 1055.577221658488 0 0.4845500650402812 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0219 + + 9 + NaN NaN 151822.7 NaN 14389 3518 17900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17911 74.928 NaN 480590 35 0 129570 0.327 + 18697 MYPYIFHVL 9 75 599.8021355882393 1197.5897182432784 2 599.8026123046875 MULTI HCD FTMS 0 0 0 17910 261127.140625 0.2019140722032617 21 -0.5346221923828125 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 1 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 76.094 0 0 6.3539 6.3539 85.28 0 0 0 3.4691001300805624 3.4691001300805624 3.4691001300805624 3.4691001300805624 0 2.75 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YP[WQ][{M(Oxidation (M))|F}V]V{I|L} 6.3539;6.0642;1.7432 +;+;- + 152 NaN NaN 151661.7 NaN 14390 3519 17910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17912 74.932 NaN 547220 35 0 49656 0.261 + 4901 FAILIHDVL 9 65 520.810530228895 1039.60650752459 2 520.8107299804688 MULTI HCD FTMS 0 0 0 17910 177738.015625 0.5253790526448125 1 -0.01615142822265625 2 Unmodified _FAILIHDVL_ ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant 67.34385681178166 0.00994769994983633 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}{I|L}HDV{I|L} 9 0 + 57.858 0 0 5.5654 5.5654 92.278 0 0 0 5.42342188037523 42.37388445241912 5.42342188037523 57.8584345174594 0 1.8807196863200843 0 0 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}{I|L}HDV{I|L} 5.5654 + + 151 NaN NaN 172229.8 NaN 14391 3519 17910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17913 74.936 NaN 330000 35 0 38931 0.262 -1 YLCMTDEWF 9 57 422.1721969373314 1263.4947614121943 3 422.1723327636719 MULTI HCD FTMS 0 0 0 17910 255243.9375 1 0 0 3 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))MTDEWF_ ENSG00000108578|ENST00000261714|BLMH;ENST00000578795.1_1_17:28576037-28576226:-|nuORF 5.731851221503515 0.3075653528928475 1 K{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6596 0 0 0 985.3318471843949 985.3318471843949 3.0102999566398125 0 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 1.6596 - 8 + NaN NaN 129938.2 NaN 14392 3519 17910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17914 74.939 NaN 370430 35 0 21147 0.261 + 7699 FYLLISKTF 9 81 566.3260850412989 1130.6376171493978 2 566.3262329101562 MULTI HCD FTMS 0 0 0 17910 84916.703125 0.5473546506123695 1 -0.01615142822265625 4 Unmodified _FYLLISKTF_ ENSG00000107949|ENST00000278100|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP;nc|ENSG00000107949|Q9P287-3|BCCIP;nc|ENSG00000107949|Q9P287-4|BCCIP 67.83816525789305 0.009787749748478139 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}SKT{M(Oxidation (M))|F} 9 0 + 72.445 0 0 6.4075 6.4075 94.022 0 0 0 3.1116583991882862 51.47608139917317 3.1116583991882862 72.44518152925373 0 2.6861818737241734 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}SKT{M(Oxidation (M))|F} 6.4075 + + 414 NaN NaN 138490.7 NaN 14393 3519 17910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17916 74.944 NaN 655100 35 0 89699 0.327 + 4388 EYAHLFEVF 9 65 577.7796256030716 1153.5446982729432 2 577.779541015625 MULTI HCD FTMS 0 0 0 17915 326256.65625 0.495445176882658 -4 0.10797882080078125 1 Unmodified _EYAHLFEVF_ ENSG00000130803|ENST00000247956|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317 96.28474662873226 0.004361282420133734 1 [YE]AH{I|L}{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 0 + 61.137 0 0 5.2999 5.2999 82.503 0 0 0 1.3206844429176101 5.966649594412559 1.3206844429176101 1.3206844429176101 0 2.4049471895720984 0 1.5994850021680094 0 + + [YE]AH{I|L}{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}Q{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}EV{M(Oxidation (M))|F};{[CP]|[EA]}YH{I|L}{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[AG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}EV{M(Oxidation (M))|F};[YE][HD]VV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2999;5.1854;4.1648;3.7236;3.3666;2.3543 +;-;-;-;-;- + 372 NaN NaN 178902.6 NaN 14394 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17917 74.949 NaN 851890 35 0 63243 0.261 + 18105 MPAFIFEHI 9 100 552.7808441323858 1103.5471353315716 2 552.7811279296875 MULTI HCD FTMS 0 0 0 17915 374184.34375 0.9469439605162003 1 -0.036102294921875 2 Unmodified _MPAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 137.58523961978855 0.00014495867019203413 1 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L} 9 4 + 73.372 0 0 6.6488 6.6488 92.656 0 0 0 40.72437456189242 7.262036441594191 7.262036441594191 24.677776560371484 0 1.555462187404089 1.3979400086720375 1.1496498648046138 0 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};[PA]M{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};[PA]{M(Oxidation (M))|F}M{I|L}{M(Oxidation (M))|F}EH{I|L};{I|L}DA{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[RP]{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}{I|L}M{M(Oxidation (M))|F}EH{I|L};{NN|[MP]|[D{I|L}]|[EV]}AN{I|L}{I|L}{[DS]|[MA]|[CV]|TT}M{I|L};{NN|[MP]|[D{I|L}]|[EV]}AN{I|L}{I|L}{[DS]|[MA]|[CV]|TT}{I|L}M;{NN|[MP]|[D{I|L}]|[EV]}A{[HG]|PP}[QT]{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[HG]|PP}{[NV]|[RG]}EH{I|L} 6.6488;4.4125;3.8462;2.9608;2.7242;2.0754;2.0153;1.7425;1.7346;1.6109 -;+;-;-;-;-;-;-;-;- + 3323 + NaN NaN 218741.5 NaN 14395 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17918 74.952 NaN 1300600 35 0 203600 0.261 + 32918 YAEQLVVEL 9 86 532.2865792077218 1062.5586054822436 2 532.2719116210938 MULTI HCD FTMS 0 0 0 17915 125561.046875 0.23634864876184344 -3 0.06851959228515625 3 Unmodified _YAEQLVVEL_ ENSG00000173230|ENST00000614479|GOLGB1;ENST00000472829.1_1_3:121448028-121448843:-|nuORF;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1 28.494509381512117 0.11816142465008336 1 [YG]A{[CP]|[EA]}{I|L}VVE{I|L} 10 2 + 45.556 0 0 4.2874 4.2874 80.965 0 0 0 1.5321251377534395 4.850680276396346 1.5321251377534395 1.5321251377534395 0 1.3494850021680094 1.5228787452803376 0 0 [YG]A{[CP]|[EA]}{I|L}VVE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SVE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SMP{I|L};[YQ]{[CP]|[EA]}{I|L}VVE{I|L};{[QN]|[E{I|L}]|[KN]}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SVE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[RH][PA]E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[RH]{[CP]|[EA]}P{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[RH]HA{[DS]|[MA]|[CV]|TT};{[QN]|[E{I|L}]|[KN]}V[RH][PA]E{I|L};[YG]A[W{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}P{I|L} 4.2874;4.1432;3.4398;2.9718;2.8757;2.3089;1.6055;1.4134;1.0414;0.69255 -;-;-;-;-;-;-;-;-;- 1234 NaN NaN 277192.3 NaN 14396 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17919 74.956 NaN 720430 35 0 128920 0.261 + 22917 QYSNAFDVF 9 80 545.7457266101524 1089.4769002871046 2 545.7459716796875 MULTI HCD FTMS 0 0 0 17915 241886.515625 0.293771613388243 -3 0.06851959228515625 4 Unmodified _QYSNAFDVF_ ENSG00000141232|ENST00000499247|TOB1 71.92227651296345 0.008466197542043549 1 [DV]{M(Oxidation (M))|F}SD{M(Oxidation (M))|F}DV 8 6 64.607 0 0 5.9301 0 0 0 162.0553729665775 162.0553729665775 43.63798466605289 0 0 0 0 1.8494850021680094 1.5228787452803376 0.6549471895720985 0 [DV]{M(Oxidation (M))|F}SD{M(Oxidation (M))|F}DV 5.9301 - 433 NaN NaN 204385.1 NaN 14397 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17920 74.959 NaN 532130 35 0 42368 0.261 + 19760 NYAWVYYHL 9 97 614.7929287250602 1227.5713045169202 2 614.7930908203125 MULTI HCD FTMS 0 0 0 17915 163327.609375 0.0029108369655614055 209 -5.0611419677734375 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 1 [YN]AWVYYH{I|L} 9 0 + 108.38 0 0 8.829 8.829 96.482 0 0 0 29.30523450795789 16.478174818886373 16.478174818886373 27.360308677862335 0 2.7302046884880937 1.6989700043360187 0 1.947621246364342 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YG]QWVYYH{I|L};[YG]GAWVYYH{I|L};[YN]AWVW[VG]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RYVWQ{[DS]|[MA]|[CV]|TT};[YQ]GWVYYH{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RYVWAG{[DS]|[MA]|[CV]|TT};{[YD]|[{M(Oxidation (M))|F}M]}[C(Carbamidomethyl (C))R]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.829;6.6002;6.2689;5.8792;5.5422;5.0727;4.4152;4.4052;4.2912;3.9339 +;-;-;-;-;-;-;-;-;- + 2119 NaN NaN 160081.4 NaN 14398 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17921 74.962 NaN 597980 35 0 49504 0.261 + 35667 YYITGNLETF 10 79 610.7947417329391 1219.574930532678 2 610.7946166992188 MULTI HCD FTMS 0 0 0 17915 314133.84375 0.7668855010843816 -3 0.06851959228515625 6 Unmodified _YYITGNLETF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 160.6895995991744 8.96468530761412E-11 1 YY{I|L}T[NG]{I|L}ET{M(Oxidation (M))|F} 10 0 + 100.47 0 0 8.238 8.238 93.755 0 0 0 11.902281476392034 11.902281476392034 11.902281476392034 13.322646798160562 0 2.579689690656103 1.6989700043360187 0.3054621874040891 1.524227503252014 + + YY{I|L}T[NG]{I|L}ET{M(Oxidation (M))|F};YY{I|L}[SG]Q{I|L}ET{M(Oxidation (M))|F};YYT{I|L}[NG]{I|L}ET{M(Oxidation (M))|F};YYT[VG]Q{I|L}ET{M(Oxidation (M))|F};YY{I|L}T{I|L}[NG]ET{M(Oxidation (M))|F};YY{I|L}T{I|L}[DG]QT{M(Oxidation (M))|F};YY{I|L}[SG][AG]{I|L}ET{M(Oxidation (M))|F};YYT[VG][AG]{I|L}ET{M(Oxidation (M))|F};YY{I|L}T{I|L}[DG][AG]T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[DP]Q[NG]{I|L}ET{M(Oxidation (M))|F} 8.238;7.1456;7.0876;5.9952;5.7994;5.2043;5.1444;3.9939;3.4803;3.064 +;-;-;-;-;-;-;-;-;- + 927 NaN NaN 173366.3 NaN 14399 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17922 74.966 NaN 576690 35 0 202340 0.262 + 15046 LLRTWLTF 8 63 525.3107586040945 1048.606964274989 2 525.3109130859375 MULTI HCD FTMS 0 0 0 17915 166150.921875 0.3770621357620403 -4 0.10797882080078125 7 Unmodified _LLRTWLTF_ REV__ENSG00000198198|ENST00000634258|SZT2;REV__nc|ENSG00000198198|Q5T011-5|SZT2 16.942295170755138 0.46913822049235215 1 {M(Oxidation (M))|F} 1 -1 19.604 0 0 1.8695 0 0 883.5281506536984 0 883.5281506536984 0 1.3481118982146967 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8695 + + 190 + NaN NaN 181390.7 NaN 14400 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17923 74.969 NaN 354210 35 0 48530 0.261 + 15279 LPAEVLDSL 9 58 478.7685759107614 955.5225988883228 2 478.76824951171875 MULTI HCD FTMS 0 0 0 17915 70064.7265625 0.2911723176911107 -3 0.06851959228515625 8 Unmodified _LPAEVLDSL_ ENSG00000120708|ENST00000442011|TGFBI;TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant 68.08070601005525 0.009709267492204555 1 V{I|L}DS{I|L} 5 4 56.058 0 0 5.8667 0 0 410.2170438728125 0 410.2170438728125 0 33.79493455131808 0 0 0 1.6861818737241734 0 0.4247425010840047 0 + V{I|L}DS{I|L} 5.8667 + + 133 NaN NaN 145279.4 NaN 14401 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17924 74.972 NaN 4749100 35 0 409520 0.261 + 21214 PQRCMTSI 8 106 468.2256568228773 934.4367607125546 2 468.7276916503906 MULTI HCD FTMS 0 0 0 17915 35948.00390625 0.4304429273166264 -4 0.10797882080078125 9 Unmodified _PQRCMTSI_ REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF 42.09456458481378 0.20402248593209013 1 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H 7 -1 + 80.834 0 0 8.6505 8.6505 88.263 0 0 0 1.457217079309828 1.457217079309828 1.457217079309828 1.457217079309828 0 1.7302046884880937 1.6989700043360187 0 0.3054621874040891 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}]{M(Oxidation (M))|F};P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{[ET]|[MV]}[WQ];P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}T{M(Oxidation (M))|F}{[CA]|SS}P;{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A[PG]{I|L} 8.6505;8.4946;6.4022;5.5069;3.9585;3.2586;3.1869;3.0497;2.535;2.3882 -;-;-;-;-;-;-;-;-;- 950 + NaN NaN 789307.9 NaN 14402 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17925 74.975 NaN 213520 35 0 12567 0.261 + 29128 TYIHWNLCL 9 69 581.7919463616099 NaN 0 581.7911376953125 PEAK HCD FTMS 0 0 0 17915 46934.5703125 0.5336164720846449 2 -0.05548858642578125 10 Unmodified _TYIHWNLCL_ REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense 12.531546534597751 0.23452071659215576 1 PC{M(Oxidation (M))|F}[DG]{M(Oxidation (M))|F}{I|L} 7 -1 12.44 0 0 1.0709 0 0 148.14775116875654 231.07734094791252 379.2250921166691 0 0 0 0 0 0 0 0 0 PC{M(Oxidation (M))|F}[DG]{M(Oxidation (M))|F}{I|L} 1.0709 - 91 + NaN NaN 122772.7 NaN 14403 3520 17915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17927 74.98 NaN 1327700 35 0 123240 0.327 -1 TPQFPDMIL 9 104 539.2679605796511 1076.5213682261021 2 539.2684936523438 MULTI HCD FTMS 0 0 0 17926 494103.46875 0.06846210456518902 32 -0.7906112670898438 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 26.268140514670165 0.13340543277302316 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 + 40.966 0 0 3.8054 3.8054 82.412 0 0 0 2.622023888063225 16.765445632184168 2.622023888063225 6.023050448947622 0 0.4247425010840047 1.3010299956639813 0.5114393726401688 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][DP]{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}YY{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}YY{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}YY{I|L}{M(Oxidation (M))|F} 3.8054;3.2459;1.2111;0.99436;0.92081 -;-;-;-;- 1042 NaN NaN 289482 NaN 14404 3521 17926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17928 74.985 NaN 377480 35 0 39840 0.261 -1 MPDIDFNL 8 67 490.7232690777627 979.4319852223255 2 490.7236022949219 MULTI HCD FTMS 0 0 0 17926 165717.859375 0.5546099757331993 -7 0.1982421875 2 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 36.04419817259434 0.28174663821216267 1 {M(Oxidation (M))|F}N{I|L} 3 -1 36.44 0 0 3.7205 0 0 587.2264123495448 0 587.2264123495448 0 11.663865622122671 0 0 0 0.6989700043360187 0 0 0.3252574989159953 {M(Oxidation (M))|F}N{I|L} 3.7205 + + 140 NaN NaN 146910.1 NaN 14405 3521 17926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17929 74.988 NaN 965700 35 0 119230 0.261 + 10890 IWDLSITRL 9 101 558.8240419931728 1115.6335310531456 2 558.8243408203125 MULTI HCD FTMS 0 0 0 17926 320363.78125 0.3530455133341681 -3 0.08506011962890625 3 Unmodified _IWDLSITRL_ ENST00000333055.8_1_5:180235916-180242536:-|nuORF 93.93812099017352 0.0044227730261779084 1 {I|L}WD{I|L}S{I|L}TR{I|L} 9 0 + 98.911 0 0 8.8659 8.8659 89.631 0 0 0 20.14014361800122 3.6619687991148453 3.6619687991148453 3.6619687991148453 0 2.885151878060192 1.6989700043360187 0.9247425010840047 0 + + {I|L}WD{I|L}S{I|L}TR{I|L};[W{I|L}]D{I|L}S{I|L}TR{I|L};[W{I|L}]EVS{I|L}TR{I|L};[W{I|L}]{[TV]|[{I|L}S]}D{I|L}TR{I|L};[WD]{I|L}{I|L}S{I|L}TR{I|L};[{M(Oxidation (M))|F}V][RP]D{I|L}GS{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A[EP]{I|L}TR{I|L};[{M(Oxidation (M))|F}V][RP]D{I|L}T[VG]{I|L};[{M(Oxidation (M))|F}V]AA[EP]{I|L}TR{I|L} 8.8659;8.5377;7.9076;6.0726;5.9401;3.6192;2.7508;2.7365;2.64 +;+;-;-;-;-;-;-;- + 1833 + NaN NaN 229166 NaN 14406 3521 17926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17930 74.992 NaN 355840 35 0 43615 0.261 -1 VYAEIMAVL 9 58 512.7727494583538 1023.5309459835076 2 512.7730102539062 MULTI HCD FTMS 0 0 0 17926 79204.7109375 0.26583693535430386 -10 0.27371978759765625 4 Oxidation (M) _VYAEIM(Oxidation (M))AVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 39.957323273324995 0.06554068735427583 1 {[QN]|[E{I|L}]|[KN]}[YG]{I|L}{M(Oxidation (M))|F}AV{I|L} 9 -1 + 48.35 0 0 4.7239 4.7239 84.048 0 0 0 1.5398434942549954 40.39136227485692 1.5398434942549954 6.9897000433601875 0 1.4247425010840047 0 0 0 {[QN]|[E{I|L}]|[KN]}[YG]{I|L}{M(Oxidation (M))|F}AV{I|L};{[VA]|[{I|L}G]}[YE]{I|L}{M(Oxidation (M))|F}AV{I|L};{[QN]|[E{I|L}]|[KN]}[YG]{I|L}[VS]M{I|L};[YV][VS]{I|L}[EC]V{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[Y{I|L}]EAV{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E[Y{I|L}]AV{I|L};{[VA]|[{I|L}G]}[YE]{I|L}[VS]M{I|L};[YV][VS]{I|L}{[CP]|[EA]}M{I|L};[YV][VS]{I|L}{[DS]|[MA]|[CV]|TT}E{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E[YG]{I|L}{I|L}{I|L} 4.7239;4.041;2.6807;2.6782;2.5493;2.4546;1.9978;1.9716;1.3416;0.72234 -;-;-;-;-;-;-;-;-;- 289 NaN NaN 132408.9 NaN 14407 3521 17926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17931 74.995 NaN 179480 35 0 11250 0.261 + 6524 FPISEETIKLL 11 55 645.3709154412561 1288.727277949312 2 645.3705444335938 MULTI HCD FTMS 0 0 0 17926 21352.986328125 0.1177402652352335 -3 0.08506011962890625 5 Unmodified _FPISEETIKLL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 48.07275321834293 0.08933233718691559 1 {M(Oxidation (M))|F}P{I|L}SEE[{I|L}T]K{I|L}{I|L} 11 0 + 36.801 0 0 2.8556 2.8556 88.168 0 0 0 28.72882102916212 3.336233486471194 3.336233486471194 36.800789661170555 0 2.353917193908117 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}P{I|L}SEE[{I|L}T]K{I|L}{I|L} 2.8556 + + 148 + NaN NaN 104586.2 NaN 14408 3521 17926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17933 75 NaN 4168800 35 0 564600 0.327 + 1402 AYQHLFYLL 9 112 584.3135657876832 1166.6125786421662 2 584.3137817382812 MULTI HCD FTMS 0 0 0 17932 2130987.75 0.059904619546975665 -6 0.1634674072265625 1 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 109.62928328672726 0.0030029239606406397 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 100.65 0 0 8.6271 8.6271 90.805 0 0 0 19.5205343810445 16.478174818886373 16.478174818886373 7.257724967479859 0 2.805462187404089 1.3979400086720375 0.3054621874040891 0.872363747448347 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y;[YQ]AH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{I|L}{M(Oxidation (M))|F}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L} 8.6271;8.005;7.9232;7.4206;7.3388;7.2366;7.0116;6.9539;6.7985;6.7167 +;-;-;-;-;-;-;-;-;- + 8400 NaN NaN 719910.4 NaN 14409 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17934 75.004 NaN 789340 35 0 75477 0.261 + 9088 HPFFNDFTF 9 77 586.2638455887189 1170.5131382442378 2 586.2639770507812 MULTI HCD FTMS 0 0 0 17932 223569.34375 0.4429050412553355 5 -0.14038848876953125 2 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 47.748688679222035 0.03472022231463587 1 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 6 43.817 0 0 3.7434 0 0 757.3188461073222 0 757.3188461073222 0 29.970843226013248 0 0 0 1.4247425010840047 0 0.6382104921644451 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.7434 + + 391 + NaN NaN 204284.4 NaN 14410 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17935 75.008 NaN 876780 35 0 96714 0.261 + 5423 FHLQPLMFLG 10 82 601.8239457638567 1201.6333385945134 2 602.328369140625 MULTI HCD FTMS 0 0 0 17932 158468.25 0.19548892933949205 16 -0.41403961181640625 3 Unmodified _FHLQPLMFLG_ ENSG00000080189|ENST00000372230|SLC35C2;ENST00000480329.5_1_20:44979343-44983832:-|nuORF;nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2 11.640296217721598 0.4022326134240651 1 [Y{I|L}]YSP{I|L} 6 8 33.311 0 0 2.7721 0 0 0 462.23127495609464 462.23127495609464 14.614262661931438 0 0 0 0 0 1.6989700043360187 0.7614393726401688 0 [Y{I|L}]YSP{I|L} 2.7721 - 860 NaN NaN 219609.9 NaN 14411 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17936 75.011 NaN 330520 35 0 19203 0.261 -1 0 75 622.2942606927419 621.2869842261418 1 622.294921875 MULTI HCD FTMS 0 0 0 17932 63890.265625 0.42706736652215854 -1 0.01938629150390625 4 NaN NaN 1 [Y{I|L}]{I|L} 3 -1 25.686 0 0 4.1344 0 0 0 229.03222893733246 229.03222893733246 -2.985775332874283 0 -2.985775332874283 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L} 4.1344 - 36 NaN NaN 148964.1 NaN 14412 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17937 75.014 NaN 203380 35 0 14365 0.263 + -1 VRKMMAEI 8 56 497.26506005892884 992.5155671846577 2 497.2650451660156 MULTI HCD FTMS 0 0 0 17932 48951.95703125 0.15842047678773657 10 -0.26055908203125 5 Oxidation (M) _VRKM(Oxidation (M))MAEI_ REV__PARP14|p.I1515M|1|0.07|ENSG00000173193|chr3:122718696-122718696|C/G|missense_variant 24.67388899826682 0.4122521268485776 1 [QA]{I|L}SQ{I|L} 6 -1 30.323 0 0 3.0551 0 0 0 349.1524752252563 349.1524752252563 4.309093686208669 0 0 0 0 0.3054621874040891 0 0.4247425010840047 0 [QA]{I|L}SQ{I|L} 3.0551 - 106 + NaN NaN 113762.9 NaN 14413 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17938 75.018 NaN 301700 35 0 20274 0.261 + -1 NLYLNMQFIL 10 77 642.834940477261 1283.6553280213218 2 642.8350830078125 MULTI HCD FTMS 0 0 0 17932 11746.67578125 0.09778044510106525 -2 0.05548858642578125 6 Oxidation (M) _NLYLNM(Oxidation (M))QFIL_ REV__ENST00000472667.1_1_2:170355634-170355844:+|nuORF 14.838274106304384 0.3723198072575719 1 {[WT]|[RM]}{M(Oxidation (M))|F}[YK]{[QG]|[NA]}E{I|L}{I|L} 10 -1 + 55.736 0 0 4.342 4.342 81.179 0 0 0 25.764837301042718 28.288493772929044 25.764837301042718 1.7609125905568135 0 0.3494850021680094 1.6989700043360187 0.6109243748081782 0.4247425010840047 {[WT]|[RM]}{M(Oxidation (M))|F}[YK]{[QG]|[NA]}E{I|L}{I|L};{[WT]|[RM]}{M(Oxidation (M))|F}[YK]{[QG]|[NA]}{I|L}E{I|L};{[WT]|[RM]}{M(Oxidation (M))|F}[YK][WQ]{I|L}{I|L};[Q{I|L}][HM]N{[WT]|[RM]}E{I|L}{I|L};[Q{I|L}][HM]N{[WT]|[RM]}{I|L}E{I|L};[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}M[KC]{I|L}{I|L};[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L};[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}][WD]{I|L}{I|L} 4.342;4.2048;3.9082;0.98484;0.84766;0.73306;0.52078;0.4587 -;-;-;-;-;-;-;- 188 NaN NaN 130225.8 NaN 14414 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17939 75.021 NaN 199880 35 0 26101 0.264 + 20568 PEEVVAPLL 9 48 483.77910313120157 965.5436533292032 2 483.7791748046875 MULTI HCD FTMS 0 0 0 17932 65494.89453125 0.34045631118508096 4 -0.10443115234375 7 Unmodified _PEEVVAPLL_ ENSG00000141933|ENST00000359315|TPGS1;nc|ENSG00000141933|Q6ZTW0-2|TPGS1 10.823927491677226 0.26684000660059787 1 P{I|L}{I|L} 3 6 28.188 0 0 2.9193 0 0 624.3126528287348 0 624.3126528287348 0 16.505149978319906 0 0 0 0.5 0 0 0 + P{I|L}{I|L} 2.9193 + + 52 NaN NaN 116047.4 NaN 14415 3522 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17941 75.026 NaN 702830 35 0 119580 0.327 + 21784 QAIGIEVEL 9 65 486.2740691727834 970.5335854123668 2 486.27410888671875 MULTI HCD FTMS 0 0 0 17940 842876.5 0.45862156680573335 11 -0.28656005859375 1 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 78.7280429016045 0.006263961847259105 1 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 60.275 0 0 6.2105 6.2105 84.566 0 0 0 5.727277393423975 16.478174818886373 5.727277393423975 2.503859178250778 0 1.4291746928241125 0 0.805462187404089 1.2856668758921828 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};{[VA]|[{I|L}G]}QA{I|L}EVE{I|L};{[VA]|[{I|L}G]}AQ{I|L}EVE{I|L};{[VA]|[{I|L}G]}AAG{I|L}EVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};{[VA]|[{I|L}G]}AGA{I|L}EVE{I|L};[VP]{[QS]|[NT]}{[TV]|[{I|L}S]}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L} 6.2105;5.9525;5.8182;5.6204;5.4916;4.6881;4.3949;4.2958;4.1663;4.0322 -;-;-;-;-;-;-;-;-;- 280 NaN NaN 198298.5 NaN 14416 3523 17940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17942 75.03 NaN 399440 35 0 46691 0.261 -1 LISMECYDI 9 79 572.2566795742051 1142.4988062152102 2 572.2573852539062 MULTI HCD FTMS 0 0 0 17940 166051.9375 0.591218171602143 2 -0.0521392822265625 2 Carbamidomethyl (C) _LISMEC(Carbamidomethyl (C))YDI_ ENSG00000261609|ENST00000648994|GAN 23.1484247019978 0.1603590852062899 1 {I|L}{I|L} 2 -1 36.186 0 0 3.1672 0 0 0 913.3086315829419 913.3086315829419 21.40973647616331 0 0 0 0 0.4247425010840047 2 0 0 {I|L}{I|L} 3.1672 + + 291 + NaN NaN 140896.2 NaN 14417 3523 17940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17943 75.034 NaN 200610 35 0 12051 0.261 + 29129 TYIHWNLCL 9 76 581.7919463616099 NaN 0 581.7922973632812 PEAK HCD FTMS 0 0 0 17940 49741.2265625 0.5655263840430899 5 -0.1336517333984375 3 Unmodified _TYIHWNLCL_ REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense 12.531546534597751 0.23452071659215576 1 {I|L}{M(Oxidation (M))|F} 2 -1 4.6927 0 0 0.404 0 0 235.10297112828795 663.2907808893186 898.3937520176066 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.404 - 64 + NaN NaN 107274.8 NaN 14418 3523 17940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17944 75.037 NaN 114650 35 0 7355.1 0.261 + -1 SPVPYCWF 8 60 528.2389589110581 NaN 0 528.4390258789062 PEAK HCD FTMS 0 0 0 17940 23113.65234375 1 0 0 4 Carbamidomethyl (C) _SPVPYC(Carbamidomethyl (C))WF_ REV__ENSG00000214285|ENST00000398023|NPS 5.760428011301431 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.66287 0 0 658.2261650371569 280.12973962955317 938.3559046667101 0 0 0 0 0 0 0 0 0 {I|L} 0.66287 - 12 + NaN NaN 101014.8 NaN 14419 3523 17940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17946 75.042 NaN 18551000 35 0 8876900 0.327 + 17277 LYPQFMFHL 9 65 606.2992298592186 1210.583906785237 2 606.300048828125 MULTI HCD FTMS 0 0 0 17945 16008099 1 0 0 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 89.065 0 0 7.3572 7.3572 92.883 0 0 0 73.79416157934763 6.7074145675533 6.7074145675533 16.070006276765483 0 2.360924374808178 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}YMH{I|L}Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}[HM]Y{I|L};[QP]{M(Oxidation (M))|F}Y{I|L}[HM]Y{I|L};[QP]{M(Oxidation (M))|F}YM[Y{I|L}]H{I|L} 7.3572;6.0297;5.3083;3.8827;3.0425;2.6647;1.629;1.6169;1.2391;0.68063 +;-;+;-;-;-;-;-;-;- + 413 + NaN NaN 631157.8 NaN 14420 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17947 75.046 NaN 1431200 35 0 289850 0.261 + 16108 LPTEEEWEF 9 83 590.2633820148351 1178.51221109647 2 590.2639770507812 MULTI HCD FTMS 0 0 0 17945 890479.625 0.7371720691488189 -2 0.042205810546875 2 Unmodified _LPTEEEWEF_ ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-2|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 58.678817012210395 0.019429721296335044 1 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F} 8 6 + 61.164 0 0 5.1899 5.1899 88.748 0 0 0 8.696662315049934 35.22160958700539 8.696662315049934 14.471580313422194 0 1.274227503252014 1.6989700043360187 0.3807196863200844 0 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[Y{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][W{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][W{M(Oxidation (M))|F}]EK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}[Y{I|L}]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WE][Q{I|L}][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}[Y{I|L}][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1899;3.962;3.2785;2.8586;2.5089;2.089;1.0045;0.39633;0.21855 -;-;-;-;-;-;-;-;- 704 NaN NaN 303061.3 NaN 14421 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17948 75.05 NaN 1070300 35 0 213840 0.261 + 4439 EYGPIHILW 9 96 564.2978517852029 1126.5811506372056 2 564.2979736328125 MULTI HCD FTMS 0 0 0 17945 708089.625 0.6180105676904298 -3 0.06159210205078125 3 Unmodified _EYGPIHILW_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 86.12129899796855 0.004627603789867734 1 [YE]G{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L}{I|L} 8 3 37.744 0 0 3.3503 0 0 0 201.06711755924064 201.06711755924064 18.23448510985584 0 0 0 0 1.392159058960253 1.5228787452803376 0 0 [YE]G{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L}{I|L} 3.3503 - 836 + NaN NaN 244934.8 NaN 14422 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17949 75.053 NaN 1456100 35 0 210340 0.261 + 12842 KYFEVPSVLL 10 96 597.8422121264203 1193.6698713196406 2 597.8429565429688 MULTI HCD FTMS 0 0 0 17945 774370.5625 0.42399789115449776 -5 0.1138458251953125 4 Unmodified _KYFEVPSVLL_ ENSG00000131966|ENST00000254286|ACTR10 75.5705956163825 0.010984675281887875 1 [YK]{M(Oxidation (M))|F}EVPSV{I|L}{I|L} 10 0 + 67.16 0 0 5.6263 5.6263 82.811 0 0 0 0.8460550734050969 16.53212513775344 0.8460550734050969 0.8460550734050969 0 2.3829131673969606 0 0.6109243748081782 0.28872548999643577 + + [YK]{M(Oxidation (M))|F}EVPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]KEVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKVPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YVKPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]D{I|L}KPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EVKPSV{I|L}{I|L};[YK]{M(Oxidation (M))|F}EPVSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]KEPVSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKPVSV{I|L}{I|L} 5.6263;5.5554;5.2365;4.9031;4.7331;4.5295;4.3998;4.1661;4.0953;3.7763 +;-;-;-;-;-;-;-;-;- + 2891 NaN NaN 307421.3 NaN 14423 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17950 75.056 NaN 387270 35 0 24877 0.264 -1 0 86 435.250960108541 868.487367283882 2 435.25115966796875 MULTI HCD FTMS 0 0 0 17945 251470.890625 0.605540106776423 41 -0.880706787109375 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 10.837 0 0 1.2479 0 0 703.4080653813414 0 703.4080653813414 0 4.243661623346755 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2479 - 55 + NaN NaN 134045.3 NaN 14424 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17951 75.06 NaN 939830 35 0 61322 0.261 + 11518 IYSEVATLI 9 89 504.7842519639482 1007.5539509946964 2 504.7843017578125 MULTI HCD FTMS 0 0 0 17945 240257.21875 0.5200834597932027 5 -0.1502532958984375 6 Unmodified _IYSEVATLI_ ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-5|PCM1 74.42276476219924 0.007657080072768255 1 [{I|L}T]{M(Oxidation (M))|F}{[ET]|[MV]}AT{I|L}{I|L} 9 3 + 72.29 0 0 7.1748 7.1748 95.4 0 0 0 19.366130211356065 56.146387799684874 19.366130211356065 69.05908938343312 0 1.274227503252014 1.2218487496163564 1.4476212463643423 0 [{I|L}T]{M(Oxidation (M))|F}{[ET]|[MV]}AT{I|L}{I|L};[KA]Q[YR]{M(Oxidation (M))|F}[VP] 7.1748;0.3207 -;- 1041 NaN NaN 226339 NaN 14425 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17952 75.063 NaN 385820 35 0 47937 0.261 + -1 QRSCLDGLF 9 82 548.2661550349692 1094.5177571367383 2 548.2653198242188 MULTI HCD FTMS 0 0 0 17945 162691.90625 0.8894601485320632 -1 0.0160369873046875 7 Carbamidomethyl (C) _QRSC(Carbamidomethyl (C))LDGLF_ REV__ENSG00000147383|ENST00000370274|NSDHL 25.399314129420986 0.14091189997036632 1 H{[MS]|[{M(Oxidation (M))|F}A]}{I|L}G{I|L}{M(Oxidation (M))|F} 7 -1 47.3 0 0 4.3215 0 0 291.1209889142594 0 291.1209889142594 0 31.10161358642024 0 0 0 1.8494850021680094 0 0.7614393726401688 0 H{[MS]|[{M(Oxidation (M))|F}A]}{I|L}G{I|L}{M(Oxidation (M))|F} 4.3215 - 275 NaN NaN 143046.5 NaN 14426 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17953 75.066 NaN 371020 35 0 15871 0.261 + 16760 LYDIILKNF 9 90 569.8289992892563 1137.6434456453126 2 569.8291625976562 MULTI HCD FTMS 0 0 0 17945 112632.40625 0.043088213226819515 25 -0.6417999267578125 8 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 61.60191391372663 0.015340508911304802 1 [Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 9 0 + 93.95 0 0 8.2583 8.2583 91.891 0 0 0 11.658781176037891 11.658781176037891 11.658781176037891 9.208187539523749 0 2.853917193908117 1.6989700043360187 0 0.3807196863200844 + + [Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}K{M(Oxidation (M))|F}N;[Y{I|L}]D{I|L}{I|L}{I|L}{M(Oxidation (M))|F}KN;[Y{I|L}]D{I|L}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}N;[YK][KT]{I|L}{I|L}[EP]{M(Oxidation (M))|F} 8.2583;7.4489;7.2335;6.4442;4.8823;2.2598 +;-;-;-;-;- + 1079 + NaN NaN 142200.1 NaN 14427 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17954 75.07 NaN 300810 35 0 19766 0.261 + 33322 YFVAVFNSW 9 88 566.775619935654 1131.536686938108 2 567.2791137695312 MULTI HCD FTMS 0 0 0 17945 18325.935546875 0.16124185566043714 -7 0.1662139892578125 9 Unmodified _YFVAVFNSW_ ENST00000447467.6_1_7:95726813-95727326:+|nuORF 25.399314129420986 0.14091189997036632 1 SW 2 7 30.969 0 0 2.7369 0 0 840.414907929598 0 840.414907929598 0 9.566949718158781 0 0 0 1 0 0 0 + SW 2.7369 + + 288 + NaN NaN 128971.1 NaN 14428 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17955 75.073 NaN 122730 35 0 9978.9 0.264 -1 PDGSSKGC 8 54 404.16961921983085 806.3246855064617 2 404.1700744628906 MULTI HCD FTMS 0 0 0 17945 75369.3203125 0.007315849261327462 113 -2.363372802734375 10 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 1 E 1 -1 3.9794 0 0 0.49352 0 0 373.16634886521024 301.1019381158813 674.2682869810915 0 0 0 0 0 0 0 0 0 E 0.49352 - 5 + NaN NaN 113644.1 NaN 14429 3524 17945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17957 75.078 NaN 1542000 35 0 79299 0.327 + 6328 FPFWPAKAL 9 111 538.7998768600553 1075.5852007869105 2 538.8002319335938 MULTI HCD FTMS 0 0 0 17956 362130.6875 0.6874849681767329 1 -0.026123046875 1 Unmodified _FPFWPAKAL_ ENSG00000101040|ENST00000471951|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8 64.23631603340823 0.01165516075559909 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}W[PA]KA{I|L} 9 0 + 62.563 0 0 5.8167 5.8167 88.85 0 0 0 11.601964465487171 40.92115631731663 11.601964465487171 10.779550148593486 0 1.916386562212267 2 0.3494850021680094 0.2614393726401688 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}W[PA]KA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W{M(Oxidation (M))|F}[PA]KA{I|L};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}W[PA]KA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[HG]|PP}[{I|L}V]{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[HV]{I|L}G{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][RP]{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DG][RK]P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][RP]A{M(Oxidation (M))|F}{I|L};[W{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}[PA]KA{I|L} 5.8167;4.8145;3.4277;3.0482;2.9932;2.6296;2.527;2.2875;2.272;2.0715 +;-;+;-;-;-;-;-;-;- + 939 NaN NaN 323617.8 NaN 14430 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17958 75.082 NaN 930250 35 0 69692 0.261 + 35668 YYITGNLETF 10 105 610.7947417329391 1219.574930532678 2 611.8101196289062 MULTI HCD FTMS 0 0 0 17956 28633.126953125 0.2719368046581781 6 -0.1662445068359375 2 Unmodified _YYITGNLETF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 71.70789743142352 0.01556163018108538 1 YYEKQ{I|L}E[{M(Oxidation (M))|F}T] 9 4 + 66.663 0 0 5.4661 5.4661 83.043 0 0 0 36.75128418909083 0.6090828329776485 0.6090828329776485 1.8803907630432803 0 0.6643943297944485 1.5228787452803376 0.3252574989159953 0.4247425010840047 YYEKQ{I|L}E[{M(Oxidation (M))|F}T];YY{I|L}T[NG]{I|L}E[{M(Oxidation (M))|F}T];YY{I|L}[SG]Q{I|L}E[{M(Oxidation (M))|F}T];YYEK[AG]{I|L}E[{M(Oxidation (M))|F}T];YY{I|L}[SG][AG]{I|L}E[{M(Oxidation (M))|F}T];YY[{I|L}V][RV]C(Carbamidomethyl (C))[{M(Oxidation (M))|F}T];YK[YE]Q{I|L}E[{M(Oxidation (M))|F}T];[HQ][NG]{[NV]|[RG]}{I|L}E{M(Oxidation (M))|F}Y;YK[YE][AG]{I|L}E[{M(Oxidation (M))|F}T];YY{I|L}{[QN]|[E{I|L}]|[KN]}[YT]QQ 5.4661;5.3119;5.0593;4.7111;3.673;2.1078;2.065;1.4903;1.3099;0.61744 -;+;-;-;-;-;-;-;-;- + 3071 + NaN NaN 223659.2 NaN 14431 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17959 75.086 NaN 781960 35 0 231900 0.264 -1 0 69 413.1934236862167 824.3722944392334 2 413.1935729980469 MULTI HCD FTMS 0 0 0 17956 365200 0.2753405473260414 77 -1.4889068603515625 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.237 0 0 1.9696 0 0 659.2933892652085 0 659.2933892652085 0 3.0187030902717975 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.9696 - 41 + NaN NaN 197976.8 NaN 14432 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17960 75.089 NaN 226290 35 0 14736 0.261 + 6364 FPFYYEIKM 9 72 619.3017080070932 1236.5888630809864 2 619.3016967773438 MULTI HCD FTMS 0 0 0 17956 139000.75 0.23910544084505256 7 -0.1822509765625 4 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 63.960520009940105 0.0120409805053046 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM 9 0 + 72.986 0 0 5.9022 5.9022 90.099 0 0 0 16.46591250700361 14.973024840566467 14.973024840566467 15.132965752203233 0 2.1677353201839438 1.5228787452803376 0.2742275032520141 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}YNKM;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}KYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}PE;YY[{I|L}P][{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KM 5.9022;4.6785;4.5707;3.9022;3.7196;3.4871;2.9764 +;-;+;-;-;-;- + 255 NaN NaN 113318.3 NaN 14433 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17961 75.093 NaN 348900 35 0 16888 0.261 + 13719 KYPLNLYLL 9 94 568.8396195282688 1135.6646861233376 2 569.3414916992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 25.399314129420986 0.14091189997036632 1 NK{I|L}{I|L}EE{I|L}{I|L} 8 6 35.443 0 0 3.1209 0 0 165.0788288800797 0 165.0788288800797 0 1.0408495027787197 0 0 0 0.3807196863200844 0 0 0.5796896906561032 NK{I|L}{I|L}EE{I|L}{I|L} 3.1209 - 718 NaN NaN 145721.5 NaN 14434 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17962 75.096 NaN 362970 35 0 62632 0.264 + 25597 SFYFTDNPMV 10 53 407.51494926575066 1219.523018397452 3 407.8930358886719 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SFYFTDNPMV_ REV__ENSG00000154252|ENST00000192314|GAL3ST2 5.40270961882225 0.4467063037482923 1 [Y{I|L}]N 3 -1 20.915 0 0 1.715 0 0 0 826.3104078840332 826.3104078840332 9.946049681132937 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]N 1.715 - 29 NaN NaN 145854.8 NaN 14435 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17963 75.099 NaN 107830 35 0 6312.7 0.261 + 2700 DVIGMMPF 8 57 455.2141794351717 NaN 0 454.8797912597656 PEAK HCD FTMS 0 0 0 17956 16830.2734375 0.42202501285846367 1 -0.026123046875 7 Unmodified _DVIGMMPF_ REV__ENSG00000007216|ENST00000314669|SLC13A2;REV__nc|ENSG00000007216|Q13183-2|SLC13A2;REV__nc|ENSG00000007216|Q13183-3|SLC13A2 2.8892196856762586 0.38822285293237185 1 G 1 -1 3.9794 0 0 0.43806 0 0 688.317963507259 160.0522402399047 848.3702037471637 0 0 0 0 0 0 0 0 0 G 0.43806 + + 6 + NaN NaN 95471.7 NaN 14436 3525 17956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17965 75.104 NaN 4443600 35 0 983660 0.327 + 33383 YGLLIGGEEL 10 108 532.2865792077218 1062.5586054822436 2 532.2718505859375 MULTI HCD FTMS 0 0 0 17964 116983.71875 0.22020319630835372 3 -0.0880279541015625 1 Unmodified _YGLLIGGEEL_ ENSG00000053770|ENST00000261558|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;nc|ENSG00000053770|Q9H0R1-2|AP5M1 25.399314129420986 0.2735354021946395 1 [YG]AHW{I|L}G{I|L} 8 6 46.375 0 0 4.3645 0 0 0 162.08529240439853 162.08529240439853 -1.7161383772921823 0 -1.7161383772921823 0 0 0 1.6989700043360187 0 0 [YG]AHW{I|L}G{I|L} 4.3645 - 2400 NaN NaN 556851.4 NaN 14437 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17966 75.108 NaN 2527600 35 0 379290 0.261 + 13107 KYLESFLAF 9 109 559.3001943947681 1116.5858358563362 2 559.3004150390625 MULTI HCD FTMS 0 0 0 17964 1514988 0.8136751136032384 -2 0.062225341796875 2 Unmodified _KYLESFLAF_ ENSG00000124571|ENST00000265351|XPO5 82.5293158979368 0.005033931517079822 1 [Y{I|L}]KES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F} 9 2 + 80.194 0 0 7.1821 7.1821 88.076 0 0 0 6.2281521291858155 16.47817481888638 6.2281521291858155 6.2281521291858155 0 2.6549471895720984 0.8860566476931632 1.1375918373824814 0 [Y{I|L}]KES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[Y{I|L}]EKS{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[Y{I|L}]A[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{I|L}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{I|L}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]K{I|L}A{M(Oxidation (M))|F} 7.1821;6.6243;6.5321;6.34;5.8903;5.4902;5.1748;4.8228;4.5532;4.5184 -;+;-;-;-;-;-;-;-;- + 7487 NaN NaN 467632.1 NaN 14438 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17967 75.112 NaN 1009000 35 0 172060 0.261 + 22918 QYSNAFDVF 9 71 545.7457266101524 1089.4769002871046 2 545.7457275390625 MULTI HCD FTMS 0 0 0 17964 718815.5 0.873002732780907 3 -0.0880279541015625 3 Unmodified _QYSNAFDVF_ ENSG00000141232|ENST00000499247|TOB1 78.7280429016045 0.006263961847259105 1 [DV]{M(Oxidation (M))|F}SD{M(Oxidation (M))|F}DV 8 6 63.911 0 0 5.8662 0 0 0 162.05555379144815 162.05555379144815 46.92139399289715 0 0 0 0 1.8494850021680094 1.5228787452803376 0.7614393726401688 0 [DV]{M(Oxidation (M))|F}SD{M(Oxidation (M))|F}DV 5.8662 - 297 NaN NaN 235914.4 NaN 14439 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17968 75.115 NaN 416150 35 0 52133 0.261 + 4389 EYAHLFEVF 9 65 577.7796256030716 1153.5446982729432 2 577.7801513671875 MULTI HCD FTMS 0 0 0 17964 266584.78125 0.40482896385544914 2 -0.055389404296875 4 Unmodified _EYAHLFEVF_ ENSG00000130803|ENST00000247956|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317 67.34385681178166 0.00994769994983633 1 HEV{M(Oxidation (M))|F} 4 5 48.197 0 0 4.1782 0 0 623.2787342755875 0 623.2787342755875 0 31.286035024402526 0 0 0 1.4247425010840047 0 0.9247425010840047 0 HEV{M(Oxidation (M))|F} 4.1782 - 139 NaN NaN 148680.6 NaN 14440 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17969 75.119 NaN 1037400 35 0 350380 0.261 + 10317 ILPGSLFRF 9 75 525.3107586040945 1048.606964274989 2 525.310791015625 MULTI HCD FTMS 0 0 0 17964 401099.53125 0.9102534262196865 2 -0.055389404296875 5 Unmodified _ILPGSLFRF_ ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7 49.55428908609986 0.03219431099695407 1 {I|L}{I|L}PGS{I|L}{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 66.315 0 0 6.3241 6.3241 92.112 0 0 0 40.70738491987967 14.973024840566467 14.973024840566467 25.94843468456581 0 1.6307196863200843 1.6989700043360187 0.4247425010840047 0 + + {I|L}{I|L}PGS{I|L}{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}{I|L}[Y{I|L}]QPR{M(Oxidation (M))|F} 6.3241;3.8496 +;- + 385 + NaN NaN 235474.3 NaN 14441 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17970 75.122 NaN 953880 35 0 91244 0.261 + 35964 YYVRAWVVF 9 101 601.8239457638567 1201.6333385945134 2 602.3135986328125 MULTI HCD FTMS 0 0 0 17964 152613.484375 0.18826639824215924 20 -0.515045166015625 6 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 18.13498045792455 0.20367413111508956 1 [Y{I|L}]{M(Oxidation (M))|F} 3 7 22.676 0 0 1.8871 0 0 0 775.4270757373446 775.4270757373446 2.692868669034283 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F} 1.8871 - 987 NaN NaN 223689.9 NaN 14442 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17971 75.125 NaN 621500 35 0 48015 0.261 + 19761 NYAWVYYHL 9 97 614.7929287250602 1227.5713045169202 2 614.7930908203125 MULTI HCD FTMS 0 0 0 17964 202159.703125 0.00360290546745272 215 -5.253303527832031 7 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 78.7280429016045 0.006263961847259105 1 [YN]AWVYYH{I|L} 9 0 + 80.695 0 0 6.5736 6.5736 92.731 0 0 0 9.78720900678752 9.78720900678752 9.78720900678752 27.429858933039398 0 2.5682503180159344 1.6989700043360187 0 1.2951140161145327 + + [YN]AWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]AYY{[RE]|[WV]}H{I|L};[YQ]GWVYYH{I|L};[WY]{[QG]|[NA]}VYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[HN]PWV{[DS]|[MA]|[CV]|TT}{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][R{M(Oxidation (M))|F}]C(Carbamidomethyl (C)){I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[RV]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RCV{[DS]|[MA]|[CV]|TT}{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]} 6.5736;4.3391;3.6949;3.4156;1.9068;1.7642;1.2201;0.89508;0.77297;0.60535 +;-;-;-;-;-;-;-;-;- + 921 NaN NaN 175883.1 NaN 14443 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17972 75.129 NaN 356810 35 0 28948 0.261 + 18106 MPAFIFEHI 9 74 552.7808441323858 1103.5471353315716 2 552.7803955078125 MULTI HCD FTMS 0 0 0 17964 119967.046875 0.30359920824251524 7 -0.1755828857421875 8 Unmodified _MPAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 48.345845343767074 0.03388484103555672 1 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L} 9 4 + 46.903 0 0 4.2502 4.2502 80.152 0 0 0 10.980589469992879 0.044321917401077826 0.044321917401077826 0.044321917401077826 0 1.4049471895720984 0 0 0 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L};MPA{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}AYYP{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}E]H{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[HG]|PP}[QT]{I|L}H{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}H{I|L};MP[PS]{[WN]|[YH]}{M(Oxidation (M))|F}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[HQ][QT]{I|L}H{I|L};MP[PS][RK]{M(Oxidation (M))|F}E{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[KA][QT]{I|L}H{I|L} 4.2502;4.2462;2.5851;2.4765;1.7507;1.4997;1.4391;0.97843;0.53805;0.32076 -;-;-;+;-;-;-;-;-;- + 633 + NaN NaN 135600.8 NaN 14444 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17973 75.132 NaN 228640 35 0 31594 0.261 + 15280 LPAEVLDSL 9 51 478.7685759107614 955.5225988883228 2 478.7684631347656 MULTI HCD FTMS 0 0 0 17964 140029.078125 0.5819275007865103 3 -0.0880279541015625 9 Unmodified _LPAEVLDSL_ ENSG00000120708|ENST00000442011|TGFBI;TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant 52.268347100219714 0.028397529699942435 1 V{I|L}DS{I|L} 5 4 50.93 0 0 5.3301 0 0 410.2162342755875 0 410.2162342755875 0 32.346368802282015 0 0 0 1.305462187404089 0 0.3807196863200844 0 + V{I|L}DS{I|L} 5.3301 + + 111 NaN NaN 115362.2 NaN 14445 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17974 75.135 NaN 1902300 35 0 384630 0.261 + 14777 LIEHPYGICV 10 97 572.2951358936645 NaN 0 572.308349609375 PEAK HCD FTMS 0 0 0 17964 33664.20703125 0.6830073370270098 -1 0.026123046875 10 Unmodified _LIEHPYGICV_ REV__ENSG00000144130|ENST00000688554|NT5DC4;REV__nc|ENSG00000144130|Q86YG4|NT5DC4 21.74664581756881 0.2664863664538205 1 YP{M(Oxidation (M))|F}A{I|L}S{I|L} 7 -1 40.813 0 0 3.572 0 0 131.06956875646364 217.06215845279533 348.131727209259 0 0 0 0 0 0.7059771852360797 0 2.6989700043360187 0 YP{M(Oxidation (M))|F}A{I|L}S{I|L} 3.572 - 1361 + NaN NaN 360915.6 NaN 14446 3526 17964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17976 75.14 NaN 373710 35 0 46242 0.327 -1 MPDIDFNL 8 63 490.7232690777627 979.4319852223255 2 490.72332763671875 MULTI HCD FTMS 0 0 0 17975 237872.6875 0.796091416697772 -1 0.03595733642578125 1 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 28.486842064014134 0.3788298654084067 1 {M(Oxidation (M))|F}N{I|L} 3 -1 36.555 0 0 3.7322 0 0 587.2257074671276 0 587.2257074671276 0 17.090606190045108 0 0 0 0.6861818737241735 0 0 0.3494850021680094 {M(Oxidation (M))|F}N{I|L} 3.7322 + + 59 NaN NaN 136461.7 NaN 14447 3527 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17977 75.144 NaN 443150 35 0 80234 0.261 + 31378 VYAEIMAVL 9 52 512.7727494583538 1023.5309459835076 2 512.7730712890625 MULTI HCD FTMS 0 0 0 17975 150198.078125 0.5041139133297693 -4 0.11421966552734375 2 Oxidation (M) _VYAEIM(Oxidation (M))AVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 48.345845343767074 0.03388484103555672 1 A{M(Oxidation (M))|F}{I|L}ECV{I|L} 7 5 55.253 0 0 5.3983 0 0 230.16267592597814 0 230.16267592597814 0 39.05532931377621 0 0 0 1.3807196863200843 0 0 0 A{M(Oxidation (M))|F}{I|L}ECV{I|L} 5.3983 - 275 NaN NaN 157505.1 NaN 14448 3527 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17978 75.148 NaN 203040 35 0 13516 0.261 + 6525 FPISEETIKLL 11 66 645.3709154412561 1288.727277949312 2 645.3707275390625 MULTI HCD FTMS 0 0 0 17975 113228.2421875 0.6243399898456331 3 -0.06809234619140625 3 Unmodified _FPISEETIKLL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 51.41523569358685 0.07560675738465314 1 T{I|L}K{I|L}{I|L} 5 6 47.423 0 0 3.6798 0 0 702.3273792951187 0 702.3273792951187 0 33.470325397914564 0 0 0 0.9247425010840047 0 0.7742275032520141 0 + T{I|L}K{I|L}{I|L} 3.6798 + + 89 NaN NaN 111869.3 NaN 14449 3527 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17979 75.151 NaN 258580 35 0 18499 0.262 -1 SYADQMFLL 9 70 552.2575892312469 1102.5006255292938 2 552.7806396484375 MULTI HCD FTMS 0 0 0 17975 69460.3125 0.06164616074989475 19 -0.47908782958984375 4 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 21.536976647645854 0.1742816388551942 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 37.423 0 0 3.3944 0 0 564.2176380841812 0 564.2176380841812 0 19.23516269895728 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.3944 + + 275 NaN NaN 116531.7 NaN 14450 3527 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17980 75.155 NaN 2367200 35 0 243230 0.261 + 21215 PQRCMTSI 8 90 468.2256568228773 934.4367607125546 2 468.22564697265625 MULTI HCD FTMS 0 0 0 17975 64459.3203125 0.5492627704800901 7 -0.17234039306640625 5 Unmodified _PQRCMTSI_ REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF 42.09456458481378 0.20402248593209013 1 [QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 7 -1 + 78.426 0 0 8.3928 8.3928 89.593 0 0 0 5.105742396127923 5.105742396127923 5.105742396127923 5.105742396127923 0 1.8494850021680094 1.6989700043360187 0 0.8996498648046138 [QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{[ET]|[MV]}[WQ];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[{I|L}T]{M(Oxidation (M))|F}{[CA]|SS}P;{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}QP;{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A[PG]{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}QP 8.3928;7.8464;4.7029;3.9716;2.763;2.3955;2.3048;2.178;2.0312;1.7942 -;-;-;-;-;-;-;-;-;- 507 NaN NaN 439393.2 NaN 14451 3527 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17982 75.159 NaN 34554000 35 0 4943700 0.327 + 1403 AYQHLFYLL 9 99 584.3135657876832 1166.6125786421662 2 584.3145751953125 MULTI HCD FTMS 0 0 0 17981 35573012 1 0 0 1 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 117.59872219059416 0.0017018906413822257 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 101.24 0 0 8.6782 8.6782 90.717 0 0 0 10.411654493187257 10.411654493187257 10.411654493187257 6.839679827251203 0 2.805462187404089 1.5228787452803376 0.7753187046026268 0.6382104921644451 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};AYQH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};AY[AG]H{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 8.6782;8.0919;8.0857;7.7857;7.6146;7.3581;7.1999;7.1191;7.0193;6.7614 +;-;-;+;-;-;-;-;-;- + 7577 NaN NaN 883669 NaN 14452 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17983 75.164 NaN 377740 35 0 64197 0.262 + 21785 QAIGIEVEL 9 52 486.2740691727834 970.5335854123668 2 486.27392578125 MULTI HCD FTMS 0 0 0 17981 264535.6875 0.14393777911388186 16 -0.41439056396484375 2 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 69.10491478415734 0.009377850133389008 1 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 53.981 0 0 5.562 5.562 83.087 0 0 0 4.458909803095885 40.90874491738596 4.458909803095885 1.6946999598069823 0 1.5484550065040281 0 0.7302046884880937 0.9802046884880937 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L} 5.562;5.3873;5.1841;4.121;3.5604 -;-;-;-;- 147 NaN NaN 138438.8 NaN 14453 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17984 75.167 NaN 1242200 35 0 73250 0.261 + 11600 IYTPIFNEY 9 118 580.2878815818193 1158.5612102304385 2 580.2891235351562 MULTI HCD FTMS 0 0 0 17981 475004.09375 0.8807409911402855 -3 0.081512451171875 3 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 92.65332237495696 0.004456439685314431 1 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY 9 0 + 66.988 0 0 5.782 5.782 84.467 0 0 0 3.6610467390964843 13.947340481202062 3.6610467390964843 3.6610467390964843 0 1.9194451763165201 0.958607314841775 1.1886218330464626 0 + + [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}GGEY;[{I|L}T]Y[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}GGEY;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}GYTTN;[YT]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[YT]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}GYTTN;[Y{I|L}]T[{I|L}P]EN{M(Oxidation (M))|F}Y 5.782;5.466;4.9872;4.8649;4.697;4.6712;4.5781;4.381;4.2621;4.1009 +;-;-;-;-;-;-;-;-;- + 2665 NaN NaN 272400.6 NaN 14454 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17985 75.171 NaN 583120 35 0 46503 0.261 -1 YSLFMTLML 9 104 575.7790029674118 1149.5434530016234 2 575.7932739257812 MULTI HCD FTMS 0 0 0 17981 63709.0390625 0.0705659940380472 56 -0.9680252075195312 4 2 Oxidation (M) _YSLFM(Oxidation (M))TLM(Oxidation (M))L_ tr|U7T2B8|U7T2B8_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00627PE=3SV=1 15.847184025352803 0.2234401846867398 1 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 -1 54.848 0 0 4.7713 0 0 0 128.0437117332307 128.0437117332307 27.012335346634288 0 0 0 0 0.3494850021680094 1.2218487496163564 0.9749073637206092 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.7713 - 3424 NaN NaN 167762.2 NaN 14455 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17986 75.174 NaN 394310 35 0 31772 0.261 + 1400 AYQHFPDKAL 10 74 595.3041193192722 1188.5936857053443 2 595.3045654296875 MULTI HCD FTMS 0 0 0 17981 165327.296875 0.8338506606256519 -1 0.01943206787109375 5 Unmodified _AYQHFPDKAL_ ENST00000503952.5_1_4:128606686-128637588:+|nuORF 28.494509381512117 0.24525010509582015 1 AYQH{I|L}{M(Oxidation (M))|F}Y 7 6 86.803 0 0 7.303 0 0 0 263.13840662174067 263.13840662174067 57.1099511878171 0 0 0 0 1.9604093769761874 2 0 0.2742275032520141 AYQH{I|L}{M(Oxidation (M))|F}Y 7.303 - 270 + NaN NaN 141140.8 NaN 14456 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17987 75.177 NaN 255230 35 0 45252 0.262 + 848 AWIESSVLV 9 58 502.27676413564103 1002.5389753380821 2 502.2767333984375 MULTI HCD FTMS 0 0 0 17981 160447.59375 0.6504140523161467 -3 0.081512451171875 6 Unmodified _AWIESSVLV_ ENST00000368576.7_1_6:116979985-116981934:-|nuORF 21.74664581756881 0.17247014374749275 1 SVV{I|L} 4 6 44.553 0 0 4.444 0 0 586.2756883819771 0 586.2756883819771 0 28.389311724773947 0 0 0 1.2614393726401687 0 0 0 SVV{I|L} 4.444 - 52 NaN NaN 130054.1 NaN 14457 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17988 75.181 NaN 315100 35 0 39508 0.262 -1 YLTCYMELQ 9 58 407.51494926575066 1219.523018397452 3 407.51495361328125 MULTI HCD FTMS 0 0 0 17981 82922.453125 0.5932363921552496 1 -0.0326385498046875 7 Carbamidomethyl (C) _YLTC(Carbamidomethyl (C))YMELQ_ ENSG00000183908|ENST00000497933|LRRC55 2.498486711656943 0.33207666356665205 1 {I|L} 1 -1 15.485 0 0 1.2697 0 0 1088.4284119294816 0 1088.4284119294816 0 10 0 0 0 0 0 0 0 {I|L} 1.2697 + + 9 + NaN NaN 127291.7 NaN 14458 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17989 75.184 NaN 251770 35 0 43511 0.261 + -1 TASFMMCQKE 10 53 422.1721969373314 1263.4947614121943 3 422.1726379394531 MULTI HCD FTMS 0 0 0 17981 116220.6015625 0.45533148681543123 8 -0.205230712890625 8 Carbamidomethyl (C),2 Oxidation (M) _TASFM(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))QKE_ REV__ENSG00000123136|ENST00000242776|DDX39A;REV__ENST00000587730.5_1_19:14520811-14521537:-|nuORF;REV__ENST00000589318.5_1_19:14520811-14524032:-|nuORF;REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF;REV__nc|ENSG00000123136|O00148-2|DDX39A;REV__nc|ENSG00000123136|O00148-3|DDX39A 1.5922808571145555 0.4668755089467872 1 K{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6596 0 0 0 985.3300141421071 985.3300141421071 3.979400086720375 0 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 1.6596 - 3 + NaN NaN 117588.7 NaN 14459 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17990 75.187 NaN 252780 35 0 20361 0.261 -1 YLMVVGKCVC 10 68 622.7954830678854 NaN 0 622.7947998046875 PEAK HCD FTMS 0 0 0 17981 178621.703125 1 0 0 9 2 Carbamidomethyl (C),Oxidation (M) _YLM(Oxidation (M))VVGKC(Carbamidomethyl (C))VC(Carbamidomethyl (C))_ ENST00000321599.8_2_3:49762383-49762692:-|nuORF 7.289230182591677 0.3339457182549222 1 YY 2 -1 10.969 0 0 0.88206 0 0 114.08514963855812 800.3369422432132 914.4220918817714 0 0 0 0 0 0 0 0 0 YY 0.88206 - 79 + NaN NaN 117090.3 NaN 14460 3528 17981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17992 75.192 NaN 9850500 35 0 4381300 0.327 + 17278 LYPQFMFHL 9 97 606.2992298592186 1210.583906785237 2 606.2997436523438 MULTI HCD FTMS 0 0 0 17991 6739543.5 0.4210083595809846 5 -0.120269775390625 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 104.79918948944588 0.003791450360204016 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 91.525 0 0 7.5604 7.5604 93.298 0 0 0 67.15202666877195 6.7074145675533 6.7074145675533 16.342867450328157 0 2.579689690656103 2 0 0.7134679910804405 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{[WN]|[YH]}M{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{[WN]|[YH]}M{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{[WN]|[YH]}M{I|L};[QP]{M(Oxidation (M))|F}[DV]{[NV]|[RG]}AHAN 7.5604;6.2104;5.7672;5.0066;4.2563;3.7653;3.4956;2.9582;2.2543;1.5806 +;-;+;-;-;-;-;-;-;- + 853 + NaN NaN 738636.4 NaN 14461 3529 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17993 75.196 NaN 1597000 35 0 345600 0.261 + 4440 EYGPIHILW 9 113 564.2978517852029 1126.5811506372056 2 564.2981567382812 MULTI HCD FTMS 0 0 0 17991 878421.75 0.7666740271602213 2 -0.052093505859375 2 Unmodified _EYGPIHILW_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 98.80718514221951 0.0042951848413998895 1 [YE]GP{I|L}H{I|L}{I|L}W 9 0 + 54.954 0 0 4.8779 4.8779 88.841 0 0 0 32.18076758674306 16.478174818886366 16.478174818886366 18.116042352767728 0 1.3684151806525389 1.5228787452803376 0 0 + + [YE]GP{I|L}H{I|L}{I|L}W;{[YD]|[{M(Oxidation (M))|F}M]}AP{I|L}H{I|L}{I|L}W;[Y{I|L}][YK][HS]{I|L}{[CT]|[{M(Oxidation (M))|F}G]};[Y{I|L}][YK]{I|L}[HS]{[CT]|[{M(Oxidation (M))|F}G]};[YE][K{I|L}][KG]W{[CT]|[{M(Oxidation (M))|F}G]};[{M(Oxidation (M))|F}V]G{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}{I|L}{[CT]|[{M(Oxidation (M))|F}G]} 4.8779;3.2699;1.5642;0.76259;0.71326;0.61107 +;-;-;-;-;- + 722 + NaN NaN 335323.9 NaN 14462 3529 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17994 75.2 NaN 449760 35 0 25118 0.261 + -1 MINENNGASF 10 94 556.7366693833318 1111.4587858334635 2 556.7561645507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))INENNGASF_ REV__ENSG00000084674|ENST00000233242|APOB 14.838274106304384 0.3723198072575719 1 [YG]S{[DS]|[MA]|[CV]|TT}T{I|L}WN 9 -1 40.116 0 0 3.6093 0 0 0 84.97726411319346 84.97726411319346 -1.236672758336681 0 -1.236672758336681 0 0 0 1.6989700043360187 0.5 0.3054621874040891 [YG]S{[DS]|[MA]|[CV]|TT}T{I|L}WN 3.6093 - 4951 NaN NaN 153088.8 NaN 14463 3529 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17995 75.203 NaN 1432200 35 0 109800 0.261 -1 TPQFPDMIL 9 116 539.2679517160655 1076.5213504989308 2 539.2701416015625 MULTI HCD FTMS 0 0 0 17991 375620.78125 0.020094147387124322 -47 1.2546005249023438 4 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 28.494509381512117 0.11816142465008336 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QT[DP]{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 42.735 0 0 3.9697 3.9697 83.895 0 0 0 9.151121163742452 11.718326581059422 9.151121163742452 9.151121163742452 0 1.363364334130467 1.5228787452803376 0.25 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QT[DP]{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}T[DP]PY{I|L} 3.9697;3.1197;2.5391;2.2643;0.22113 -;+;-;-;- + 2289 NaN NaN 301190.2 NaN 14464 3529 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17997 75.208 NaN 2351300 35 0 368240 0.327 + 12843 KYFEVPSVLL 10 106 597.8422121264203 1193.6698713196406 2 597.84228515625 MULTI HCD FTMS 0 0 0 17996 1067222.25 0.584345538565276 1 -0.03607177734375 1 Unmodified _KYFEVPSVLL_ ENSG00000131966|ENST00000254286|ACTR10 103.82355648334675 5.879419037132958E-05 1 [Y{M(Oxidation (M))|F}]KEVPSV{I|L}{I|L} 10 2 + 83.088 0 0 6.9607 6.9607 85.867 0 0 0 2.2581772633434127 16.53212513775344 2.2581772633434127 2.2581772633434127 0 2.5189301784845295 0 1.5783409326844267 0 [Y{M(Oxidation (M))|F}]KEVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKVPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YVKPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]KEPVSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EVKPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKPVSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]KEVPS{I|L}V{I|L};[Y{M(Oxidation (M))|F}]EKPVSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKVPS{I|L}V{I|L} 6.9607;6.7716;6.5194;5.9445;5.7004;5.6923;5.5112;5.3505;5.259;5.1613 -;-;-;-;-;-;-;-;-;- 4658 NaN NaN 445336.6 NaN 14465 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17998 75.213 NaN 1372200 35 0 98894 0.261 + 11601 IYTPIFNEY 9 122 580.2878815818193 1158.5612102304385 2 580.2875366210938 MULTI HCD FTMS 0 0 0 17996 495918.84375 0.9195206098568901 -1 0.016021728515625 2 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 92.65332237495696 0.004456439685314431 1 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY 9 0 + 67.672 0 0 5.8411 5.8411 85.72 0 0 0 6.460828060918828 14.973024840566467 6.460828060918828 6.460828060918828 0 1.9802046884880937 1.154901959985743 1 0 + + [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}GGEY;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}GGEY;[YT]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}[YE]N;[{I|L}T]Y[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}[YG]TTN;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EPY{M(Oxidation (M))|F} 5.8411;5.2834;5.0463;4.6421;4.4886;4.0844;4.0141;3.9531;3.8682;3.8196 +;-;-;-;-;-;-;-;-;- + 2261 NaN NaN 291945.9 NaN 14466 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 17999 75.216 NaN 344600 35 0 23854 0.263 -1 0 79 435.250960108541 868.487367283882 2 435.2514343261719 MULTI HCD FTMS 0 0 0 17996 174634.171875 0.4205178373575409 47 -0.8306732177734375 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.7829 0 0 703.4084315922789 0 703.4084315922789 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7829 - 56 + NaN NaN 141271.6 NaN 14467 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18000 75.219 NaN 267120 35 0 19547 0.261 -1 0 68 622.2942606927419 621.2869842261418 1 622.2930297851562 MULTI HCD FTMS 0 0 0 17996 93992.9609375 0.6282854814660702 7 -0.18939208984375 4 NaN NaN 1 [Y{I|L}]Y 3 -1 24.437 0 0 3.9333 0 0 0 179.05343865412934 179.05343865412934 6.989700043360184 0 0 0 0 0 2 0 0 [Y{I|L}]Y 3.9333 - 22 NaN NaN 123631.8 NaN 14468 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18001 75.223 NaN 606050 35 0 55658 0.261 + 9089 HPFFNDFTF 9 87 586.2638455887189 1170.5131382442378 2 586.7647094726562 MULTI HCD FTMS 0 0 0 17996 62972.80078125 0.15859979204694064 11 -0.2872772216796875 5 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 24.020572477871973 0.15282392193088168 1 T{M(Oxidation (M))|F} 2 7 26.568 0 0 2.2698 0 0 904.3868392713847 0 904.3868392713847 0 13.33658667374088 0 0 0 0.8494850021680094 0 0.25 0 + T{M(Oxidation (M))|F} 2.2698 + + 299 + NaN NaN 176463.6 NaN 14469 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18002 75.226 NaN 235170 35 0 22668 0.261 -1 VCNRTEGFI 9 64 548.2661550349692 1094.5177571367383 2 548.2662353515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _VC(Carbamidomethyl (C))NRTEGFI_ ENSG00000177602|ENST00000325418|HASPIN 12.240655878213236 0.2545997876781172 1 {I|L}EV{[WT]|[RM]}G{I|L}{M(Oxidation (M))|F} 8 -1 37.88 0 0 3.4609 0 0 130.9993226680205 0 130.9993226680205 0 18.718553028398684 0 0 0 1.1237125054200234 0 0.4247425010840047 0 {I|L}EV{[WT]|[RM]}G{I|L}{M(Oxidation (M))|F} 3.4609 - 187 + NaN NaN 116440.9 NaN 14470 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18003 75.229 NaN 174350 35 0 22052 0.261 + 25946 SPDDLELEL 9 56 515.7506185707616 NaN 0 515.7504272460938 PEAK HCD FTMS 0 0 0 17996 33484.93359375 0.3426606056884869 -3 0.06809234619140625 7 Unmodified _SPDDLELEL_ ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant 19.256988751693697 0.19238547928067054 1 E{I|L}E 3 6 20.177 0 0 1.9599 0 0 131.09758271568757 524.2002657525999 655.2978484682874 0 0 0 0 0 0.8494850021680094 0 0 0 + E{I|L}E 1.9599 + + 54 + NaN NaN 102273.8 NaN 14471 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18004 75.233 NaN 455760 35 0 39104 0.261 + 11061 IYGEKLQFIF 10 76 629.3476126303283 1256.6806723274565 2 629.8491821289062 MULTI HCD FTMS 0 0 0 17996 52481.51953125 0.550313498332053 -1 0.016021728515625 8 Unmodified _IYGEKLQFIF_ ENSG00000152253|ENST00000282074|SPC25;ENST00000479309.6_1_2:169690730-169745796:-|nuORF 34.93206674587334 0.18938571726943593 1 [Y{I|L}][{I|L}V]SQQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 4 + 45.031 0 0 3.5834 3.5834 82.541 0 0 0 9.863715560249567 9.863715560249567 9.863715560249567 6.918402966525576 0 1.9177353201839438 1.6989700043360187 0 0.3054621874040891 [Y{I|L}][{I|L}V]SQQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}[K{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}][KP]{[DS]|[MA]|[CV]|TT}Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.5834;3.0328;2.9921 -;+;- + 135 NaN NaN 159023.1 NaN 14472 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18005 75.236 NaN 164780 35 0 8290.8 0.261 + 6526 FPISEETIKLL 11 65 645.3709154412561 1288.727277949312 2 645.3726196289062 MULTI HCD FTMS 0 0 0 17996 59994.35546875 0.3308085912181527 6 -0.1565704345703125 9 Unmodified _FPISEETIKLL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 26.020703789607367 0.2303631665196249 1 KS{NN|[MP]|[D{I|L}]|[EV]}[DN]Q{I|L}{I|L} 9 7 37.725 0 0 2.9273 0 0 244.1781941144547 0 244.1781941144547 0 32.24091870021589 0 0 0 0 0 1.1861818737241734 0 KS{NN|[MP]|[D{I|L}]|[EV]}[DN]Q{I|L}{I|L} 2.9273 - 76 NaN NaN 110789 NaN 14473 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18006 75.239 NaN 67324 35 0 4656.7 0.264 + 18444 MPVIPPLF 8 40 457.2642318855019 912.5139108378038 2 457.2641296386719 MULTI HCD FTMS 0 0 0 17996 39976.109375 0.21633564443470352 31 -0.667755126953125 10 Unmodified _MPVIPPLF_ AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 12.764 0 0 1.3988 0 0 747.4341511715913 0 747.4341511715913 0 12.764209843288903 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3988 + + 2 + NaN NaN 87102.7 NaN 14474 3530 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18008 75.244 NaN 1070600 35 0 179770 0.327 + 16109 LPTEEEWEF 9 75 590.2633820148351 1178.51221109647 2 590.2633666992188 MULTI HCD FTMS 0 0 0 18007 578373.4375 0.47879898842445734 5 -0.1204986572265625 1 Unmodified _LPTEEEWEF_ ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-2|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 37.97399986684836 0.07464525285885698 1 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F} 8 6 + 52.585 0 0 4.462 4.462 87.548 0 0 0 8.626590506049325 26.64320017660792 8.626590506049325 14.471580313422194 0 1.274227503252014 1.6989700043360187 0 0 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[Y{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][W{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};{[ET]|[MV]}[YT]D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][W{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[YT]D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{[RE]|[WV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.462;3.2341;2.6913;2.3774;1.8752;1.7811;1.4672;0.96501;0.33924 -;-;-;-;-;-;-;-;- 320 NaN NaN 255286.6 NaN 14475 3531 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18009 75.249 NaN 1772500 35 0 107040 0.261 + 17355 LYQDKFPFF 9 106 602.8051543740269 1203.5957558148536 2 602.804931640625 MULTI HCD FTMS 0 0 0 18007 1132608.25 1 0 0 2 Unmodified _LYQDKFPFF_ ENSG00000144028|ENST00000323853|SNRNP200 96.36657018975838 0.004359138328518304 1 {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 93.599 0 0 7.7766 7.7766 91.093 0 0 0 67.76207232615569 5.570947463396209 5.570947463396209 9.208187539523749 0 2.4489700043360187 2 0.4247425010840047 0.7059771852360797 + + {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG]DK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YQ[YG]{I|L}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG][YG]{I|L}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q[YN]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[{M(Oxidation (M))|F}V]{[QS]|[NT]}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG][YN]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}K[Y{I|L}]{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SPG{I|L}{[QS]|[NT]}M{I|L}{M(Oxidation (M))|F};{I|L}YQ{[HG]|PP}[NS]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 7.7766;7.0115;6.0355;4.9578;4.847;4.2275;4.0819;3.2738;3.2302;3.0672 +;-;-;-;-;-;-;-;-;- + 2952 + NaN NaN 350149.1 NaN 14476 3531 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18010 75.252 NaN 123530 35 0 6797.8 0.261 + 6365 FPFYYEIKM 9 60 619.3017080070932 1236.5888630809864 2 619.3014526367188 MULTI HCD FTMS 0 0 0 18007 89342.6171875 0.15368482449819845 13 -0.32965850830078125 3 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 28.494509381512117 0.11816142465008336 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}PE 5 6 31.67 0 0 2.5611 0 0 535.2673207013687 0 535.2673207013687 0 2.685690803236298 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}PE 2.5611 - 79 NaN NaN 100574.2 NaN 14477 3531 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18011 75.255 NaN 292100 35 0 60397 0.261 + 31391 VYAHFPINVVI 11 56 636.3611324463872 1270.7077119595742 2 636.361572265625 MULTI HCD FTMS 0 0 0 18007 60742.48046875 0.470681240461562 -1 0.03607177734375 4 Unmodified _VYAHFPINVVI_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000511075.5_1_4:39457912-39460059:-|nuORF 13.042465956692817 0.3434429782671734 1 NVV{I|L} 4 7 40.433 0 0 3.1819 0 0 827.4331532209 0 827.4331532209 0 34.94850021680094 0 0 0 0.5 0 0 0.3494850021680094 + NVV{I|L} 3.1819 + + 13 NaN NaN 133884.1 NaN 14478 3531 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18013 75.26 NaN 5139400 35 0 1142800 0.327 + 4509 EYKIAFPYL 9 95 572.3080926403767 1142.6016323475533 2 572.3082275390625 MULTI HCD FTMS 0 0 0 18012 2614068.5 0.8825252592603221 1 -0.0194549560546875 1 Unmodified _EYKIAFPYL_ ENSG00000174231|ENST00000304992|PRPF8 126.56589448801843 0.0008132384440316759 1 [YE]K{I|L}A{M(Oxidation (M))|F}PY{I|L} 9 0 + 94.998 0 0 8.3142 8.3142 95.323 0 0 0 22.5214100354401 14.973024840566467 14.973024840566467 22.5214100354401 0 2.610924374808178 1.2218487496163564 3.06295299324845 0 + + [YE]K{I|L}A{M(Oxidation (M))|F}PY{I|L};[YG]{I|L}S{I|L}A{M(Oxidation (M))|F}PY{I|L};[YT][VG]{I|L}A{M(Oxidation (M))|F}PY{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}A{I|L}S{I|L}{[DS]|[MA]|[CV]|TT};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AA{I|L}A[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AAA{I|L}[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AAA[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AA{I|L}{M(Oxidation (M))|F}[VS]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}{I|L}[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[NV]|[RG]}[YV]Y{I|L} 8.3142;6.3431;5.8357;5.3786;4.1222;3.9681;3.9681;3.7047;3.6599;3.6599 +;-;-;-;-;-;-;-;-;- + 6152 NaN NaN 858804.1 NaN 14479 3532 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18014 75.265 NaN 1543800 35 0 342100 0.261 + 17575 LYVNVDVLE 9 104 532.2861195931562 NaN 0 532.2719116210938 PEAK HCD FTMS 0 0 0 18012 29440.2734375 0.6276678157835256 1 -0.0194549560546875 2 Unmodified _LYVNVDVLE_ REV__ENSG00000204963|ENST00000525929|PCDHA7;REV__nc|ENSG00000204963|Q9UN72-2|PCDHA7;REV__PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant 36.12702656103203 0.09069617296470832 1 {I|L}G{I|L}W 4 -1 21.938 0 0 2.0647 0 0 165.10772785523938 425.158632242529 590.2663600977684 0 0 0 0 0 0 0 0 0 {I|L}G{I|L}W 2.0647 - 817 + NaN NaN 312170.4 NaN 14480 3532 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18015 75.268 NaN 1219300 35 0 209550 0.261 + 13108 KYLESFLAF 9 103 559.3001943947681 1116.5858358563362 2 559.30029296875 MULTI HCD FTMS 0 0 0 18012 738618.5 0.3966998364983442 4 -0.1044921875 3 Unmodified _KYLESFLAF_ ENSG00000124571|ENST00000265351|XPO5 63.960520009940105 0.0120409805053046 1 [YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F} 9 0 + 73.521 0 0 6.5844 6.5844 91.921 0 0 0 2.922152515121226 31.938987478917703 2.922152515121226 18.979400086720382 0 2.8494850021680094 0 0.6643943297944485 0 + + [YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};NRR{[HG]|PP}{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[KA]{M(Oxidation (M))|F}HH{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[YE]K{I|L}A{M(Oxidation (M))|F};[YK]{I|L}[{I|L}A][YE]A{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YE]K{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[YE]{I|L}KA{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YE]{I|L}KA{M(Oxidation (M))|F} 6.5844;4.8846;4.7088;3.6637;3.2265;3.0546;3.0387;2.8788;2.4491;2.2733 +;-;-;-;-;-;-;-;-;- + 2164 NaN NaN 273415 NaN 14481 3532 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18016 75.272 NaN 502620 35 0 186210 0.261 + 15070 LLYGRAPLF 9 58 525.3107586040945 1048.606964274989 2 525.3111572265625 MULTI HCD FTMS 0 0 0 18012 257347.96875 0.5840242933102763 8 -0.202423095703125 4 Unmodified _LLYGRAPLF_ REV__ENST00000414656.1_1_9:139700878-139703284:-|nuORF 24.67388899826682 0.14717941214954053 1 {I|L}{I|L}[{M(Oxidation (M))|F}E]NT 6 -1 22.747 0 0 2.1692 0 0 0 328.2362116717265 328.2362116717265 2.262135550188063 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}{I|L}[{M(Oxidation (M))|F}E]NT 2.1692 - 89 NaN NaN 164676.9 NaN 14482 3532 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18017 75.275 NaN 278840 35 0 51644 0.261 -1 MPMNVADLI 9 44 510.2483975056234 1018.4822420780469 2 510.2483825683594 MULTI HCD FTMS 0 0 0 18012 116223.734375 0.17247835997226738 -12 0.31604766845703125 5 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 29.081581746732265 0.1154664336125038 1 EAD{I|L}{I|L} 5 -1 50.573 0 0 4.9655 0 0 459.19087416816564 0 459.19087416816564 0 31.620768972555595 0 0 0 1.5 0 0 0 EAD{I|L}{I|L} 4.9655 - 27 NaN NaN 121426.7 NaN 14483 3532 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18019 75.28 NaN 757360 35 0 96178 0.327 + 35588 YYIFIPSKF 9 72 589.318302735094 1176.622052536988 2 589.3179931640625 MULTI HCD FTMS 0 0 0 18018 372348.53125 0.010750758785398244 49 -0.8259124755859375 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 55.50274090549119 0.023872834264864425 1 Y{I|L}{I|L}{M(Oxidation (M))|F}YPSK{M(Oxidation (M))|F} 9 2 + 55.372 0 0 4.706 4.706 82.796 0 0 0 4.120768972555595 4.120768972555595 4.120768972555595 4.120768972555595 0 1.8737125054200234 1.3979400086720375 0.2742275032520141 0.7059771852360797 Y{I|L}{I|L}{M(Oxidation (M))|F}YPSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};Y{I|L}{M(Oxidation (M))|F}V[TP]YK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{I|L}]T{[HG]|PP}KPSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[{M(Oxidation (M))|F}V]{I|L}[HQ]K{M(Oxidation (M))|F};[KS]P{I|L}[{M(Oxidation (M))|F}V][DP]K{M(Oxidation (M))|F} 4.706;4.3558;4.1877;3.0158;2.7394;2.5991;1.5898;1.4137 -;-;-;-;-;-;-;- 638 + NaN NaN 204339.5 NaN 14484 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18020 75.284 NaN 977020 35 0 135280 0.261 + 24895 RYQTFLQLL 9 110 591.3371984244976 1180.6598439157951 2 591.33740234375 MULTI HCD FTMS 0 0 0 18018 444336.34375 0.9194422237745895 2 -0.06218719482421875 2 Unmodified _RYQTFLQLL_ ENSG00000122952|ENST00000373944|ZWINT 43.981846655682396 0.04706587046877104 1 T{M(Oxidation (M))|F}{I|L}Q{I|L}{I|L} 6 3 60.059 0 0 5.0869 0 0 447.22297866035314 0 447.22297866035314 0 40.48475416426206 0 0 0 2.094187677400525 0 0.4247425010840047 0 + T{M(Oxidation (M))|F}{I|L}Q{I|L}{I|L} 5.0869 + + 1529 NaN NaN 228366.8 NaN 14485 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18021 75.288 NaN 1252600 35 0 112450 0.261 -1 TPQFPDMIL 9 100 539.2679517160655 1076.5213504989308 2 539.2683715820312 MULTI HCD FTMS 0 0 0 18018 417435 0.02233103393968366 -43 1.1506271362304688 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 36.506200033944 0.08138327636155518 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 52.105 0 0 4.8401 4.8401 82.246 0 0 0 13.389399919613965 26.13585480649178 13.389399919613965 2.500568872748673 0 1.3494850021680094 1.3979400086720375 0.566901560044258 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVP[DN]{I|L}{I|L};E{[CP]|[EA]}WVA{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVPAAD[TP];E[PS]{[DS]|[MA]|[CV]|TT}VAPY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[HG]|PP}K{M(Oxidation (M))|F}VV;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[{I|L}T]PDPY{I|L} 4.8401;4.6078;1.9483;1.6879;0.95313;0.35827;0.26454 -;-;-;-;-;-;- 1723 NaN NaN 275573.3 NaN 14486 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18022 75.291 NaN 458040 35 0 44520 0.261 + -1 SYRMCRPCR 9 91 614.7794999533548 NaN 0 614.7929077148438 PEAK HCD FTMS 0 0 0 18018 14559.8115234375 0.8657873052097942 -1 0.0194549560546875 4 Carbamidomethyl (C) _SYRMCRPC(Carbamidomethyl (C))R_ REV__ENSG00000117174|ENST00000370574|ZNHIT6;REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 11.640296217721598 0.23883959125015683 1 {M(Oxidation (M))|F}AWVYY 6 -1 30.662 0 0 2.4978 0 0 130.0399937874875 265.1311129205688 395.1711067080563 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AWVYY 2.4978 - 651 + NaN NaN 152942.3 NaN 14487 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18023 75.294 NaN 345990 35 0 56029 0.262 -1 VYAEIMAVL 9 61 512.7727494583538 1023.5309459835076 2 512.7725830078125 MULTI HCD FTMS 0 0 0 18018 126758.375 0.4254425973106798 2 -0.06218719482421875 5 Oxidation (M) _VYAEIM(Oxidation (M))AVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 34.10243960390752 0.09241788333544565 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV{I|L} 9 -1 + 71.092 0 0 6.9458 6.9458 88.218 0 0 0 7.7815125038364386 16.478174818886373 7.7815125038364386 7.7815125038364386 0 1.6989700043360187 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV{I|L};{[VA]|[{I|L}G]}[YE]{I|L}{M(Oxidation (M))|F}AV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]{I|L}[EC]V{I|L} 6.9458;6.1855;4.8279 -;-;- 253 NaN NaN 135915.4 NaN 14488 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18024 75.298 NaN 181340 35 0 25677 0.261 + 11521 IYSEVMEALKL 11 55 648.3496616313109 1294.6847703294218 2 648.3492431640625 MULTI HCD FTMS 0 0 0 18018 60239.125 0.576905459758892 1 -0.03271484375 6 Unmodified _IYSEVMEALKL_ ENSG00000168300|ENST00000522514|PCMTD1;ENST00000521046.1_1_8:52773369-52773723:-|nuORF 46.0223103267499 0.09816448733256712 1 MEA{I|L}K{I|L} 6 5 62.114 0 0 4.7976 0 0 591.2899647443375 0 591.2899647443375 0 54.640012553530966 0 0 0 1.5114393726401687 0 0.7614393726401688 0 + MEA{I|L}K{I|L} 4.7976 + + 57 NaN NaN 108289.4 NaN 14489 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18025 75.301 NaN 1194900 35 0 94837 0.261 -1 YVLDCFAEEA 10 104 608.7633743183553 1215.5121957035105 2 608.763916015625 MULTI HCD FTMS 0 0 0 18018 108977.78125 0.20602299397082643 -4 0.087554931640625 7 Carbamidomethyl (C) _YVLDC(Carbamidomethyl (C))FAEEA_ ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENST00000485979.1_1_3:107937380-107938376:-|nuORF 3.944395688203298 0.4544253912184634 1 {M(Oxidation (M))|F}QVR{M(Oxidation (M))|F}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 -1 30.334 0 0 2.4955 0 0 131.9355284392139 0 131.9355284392139 0 -3.77615842629476 -3.77615842629476 0 0 0 0 0.9436726795685342 0.48020468848809383 {M(Oxidation (M))|F}QVR{M(Oxidation (M))|F}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.4955 - 2345 + NaN NaN 270526.9 NaN 14490 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18026 75.304 NaN 294530 35 0 20263 0.261 + 11062 IYGEKLQFIF 10 72 629.3476126303283 1256.6806723274565 2 629.8483276367188 MULTI HCD FTMS 0 0 0 18018 55492.37109375 0.5818848451817055 2 -0.06218719482421875 8 Unmodified _IYGEKLQFIF_ ENSG00000152253|ENST00000282074|SPC25;ENST00000479309.6_1_2:169690730-169745796:-|nuORF 38.175570920033316 0.1612389583597779 1 [Y{I|L}]{[NV]|[RG]}[WR]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 4 + 44.873 0 0 3.5707 3.5707 88.909 0 0 0 11.685071558340994 18.16569691289537 11.685071558340994 44.87265918458512 0 1.1237125054200234 1.3979400086720375 0 0.3054621874040891 [Y{I|L}]{[NV]|[RG]}[WR]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.5707 - 113 NaN NaN 128343.4 NaN 14491 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18027 75.308 NaN 348700 35 0 24902 0.261 + 9524 HRARMIEYF 9 78 611.810249062227 1221.6059451912538 2 611.8087768554688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _HRARMIEYF_ ENSG00000138670|ENST00000264400|RASGEF1B;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B 13.042465956692817 0.2476723265019929 1 {I|L}EY{M(Oxidation (M))|F} 4 5 39.993 0 0 3.2738 0 0 651.3386827464717 0 651.3386827464717 0 33.79493455131808 0 0 0 0.805462187404089 0 0 0 + {I|L}EY{M(Oxidation (M))|F} 3.2738 + + 57 NaN NaN 147358.9 NaN 14492 3533 18018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18029 75.312 NaN 10469000 35 0 1699600 0.327 + 1404 AYQHLFYLL 9 91 584.3135657876832 1166.6125786421662 2 584.3140258789062 MULTI HCD FTMS 0 0 0 18028 6616396 0.1859948210176861 6 -0.1502532958984375 1 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 109.62928328672726 0.0030029239606406397 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 98.939 0 0 8.4809 8.4809 89.912 0 0 0 21.6961876710689 38.86481650788305 21.6961876710689 5.597718523607966 0 2.8494850021680094 1.5228787452803376 0.5283773187068795 0.6109243748081782 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y 8.4809;8.0011;7.8884;7.486;7.109;7.0646;6.9897;6.8089;6.594;6.5099 +;-;-;-;-;-;-;-;-;- + 5072 NaN NaN 465266.9 NaN 14493 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18030 75.317 NaN 1872400 35 0 196960 0.261 + 34393 YPEPFLIKL 9 109 560.3260596254472 1118.6375663176943 2 560.3262329101562 MULTI HCD FTMS 0 0 0 18028 1116435 0.7414338115992667 -3 0.06817626953125 2 Unmodified _YPEPFLIKL_ ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP 99.75527289724121 0.004270341300239591 1 YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L} 9 0 + 89.993 0 0 8.0449 8.0449 94.076 0 0 0 44.752962116135734 12.777172647677006 12.777172647677006 16.518637558036673 0 2.473197507588033 1.5228787452803376 0.7302046884880937 0.28872548999643577 + + YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L};YP{M(Oxidation (M))|F}[EP]{I|L}{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}Y{I|L}{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}{I|L}Y{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}{I|L}{I|L}YK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}EPYK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[EP]Y{I|L}{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}Y[EP]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]Y{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[EP]{I|L}Y{I|L}K{I|L} 8.0449;6.5682;4.2496;4.021;3.4839;3.4403;2.8445;2.8201;2.7733;2.6159 +;-;-;-;-;-;-;-;-;- + 1997 + NaN NaN 367354 NaN 14494 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18031 75.32 NaN 327580 35 0 39725 0.261 + 18165 MPDIDFNL 8 63 490.7232690777627 979.4319852223255 2 490.7232666015625 MULTI HCD FTMS 0 0 0 18028 206207.453125 0.6901169916446194 6 -0.1502532958984375 3 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 42.09456458481378 0.20402248593209013 1 D{M(Oxidation (M))|F}N{I|L} 4 4 46.186 0 0 4.7156 0 0 472.19847304511876 0 472.19847304511876 0 29.68765315847925 0 0 0 0.75 0 0.3252574989159953 0.3494850021680094 + D{M(Oxidation (M))|F}N{I|L} 4.7156 + + 106 NaN NaN 130563 NaN 14495 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18032 75.324 NaN 428880 35 0 43567 0.261 + 19090 NEYKHAFEI 9 91 575.7790029674118 1149.5434530016234 2 575.7927856445312 MULTI HCD FTMS 0 0 0 18028 42069.23828125 0.04659711810795882 62 -1.089752197265625 4 Unmodified _NEYKHAFEI_ ENSG00000115904|ENST00000402219|SOS1 19.256988751693697 0.19398022840297344 1 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC] 9 8 + 43.161 0 0 3.7546 3.7546 82.874 0 0 0 7.279135002919951 5.6424927368725974 5.6424927368725974 7.279135002919951 0 0 1.0457574905606752 0.6382104921644451 0 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC];N{I|L}HY{M(Oxidation (M))|F}TD[Q{I|L}];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{M(Oxidation (M))|F}Y{I|L}TM;[YT]VY{M(Oxidation (M))|F}TM{I|L}{I|L};[YT]VY{M(Oxidation (M))|F}{I|L}[DV]M;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[TP]TD[Q{I|L}];NQ{M(Oxidation (M))|F}{[RE]|[WV]}TD[Q{I|L}];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TM{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}{I|L}[DV]M;N{I|L}H{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L}TM 3.7546;3.1214;3.0568;2.8793;2.8065;2.4417;2.2104;2.0385;1.9657;1.5662 -;-;-;-;-;-;-;-;-;- 1538 NaN NaN 145349.6 NaN 14496 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18033 75.327 NaN 261470 35 0 40869 0.262 + 21786 QAIGIEVEL 9 54 486.2740691727834 970.5335854123668 2 486.27447509765625 MULTI HCD FTMS 0 0 0 18028 96264.2578125 0.05237880608293125 22 -0.50616455078125 5 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 45.69961567697781 0.039180348357221985 1 [Q{I|L}]Q{I|L}EVE{I|L} 8 2 + 42.407 0 0 4.3694 4.3694 80.987 0 0 0 3.154177722349168 31.949112273667247 3.154177722349168 1.3033376849500655 0 1.057902146726378 0 0.3807196863200844 0.2614393726401688 [Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]{I|L}QEVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L};[VP][{I|L}A]G{[CA]|SS}VE{I|L};[Q{I|L}]{I|L}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L} 4.3694;4.2351;3.9186;2.6983;2.5985;2.3882;2.3357 -;-;-;-;-;-;- 84 NaN NaN 118278.2 NaN 14497 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18034 75.33 NaN 233740 35 0 16532 0.261 + -1 YTDNTKMTN 9 74 552.2392694990144 NaN 0 552.257568359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _YTDNTKM(Oxidation (M))TN_ REV__nc|ENSG00000227191|P03986|TRGC2;REV__nc|ENSG00000289746|P0CF51|TRGC1 8.745405648335112 0.25286782695573473 1 W{M(Oxidation (M))|F}GPD 5 -1 16.771 0 0 1.5212 0 0 111.94880159392876 385.2250155084594 497.17381710238817 0 0 0 0 0 0 0 0.3494850021680094 0 W{M(Oxidation (M))|F}GPD 1.5212 - 222 + NaN NaN 120257.9 NaN 14498 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18035 75.334 NaN 251460 35 0 24232 0.261 + 15716 LPETTFPAL 9 47 494.7709889794029 987.5274250256058 2 494.77069091796875 MULTI HCD FTMS 0 0 0 18028 63956.4375 0.7787219215418847 3 -0.08514404296875 7 Unmodified _LPETTFPAL_ ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant 16.942295170755138 0.21397866736869717 1 D{M(Oxidation (M))|F}[HA][PA]{M(Oxidation (M))|F} 7 7 25.986 0 0 2.6314 0 0 184.15726008595578 0 184.15726008595578 0 18.18205088429579 0 0 0 0.8494850021680094 0 0 0 D{M(Oxidation (M))|F}[HA][PA]{M(Oxidation (M))|F} 2.6314 - 80 + NaN NaN 117669.2 NaN 14499 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18036 75.337 NaN 236250 35 0 18741 0.261 + -1 CLGQLQVGSW 10 77 566.775619935654 1131.536686938108 2 566.7750244140625 MULTI HCD FTMS 0 0 0 18028 34010.49609375 0.2613500447285749 11 -0.29412078857421875 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CLGQLQVGSW_ REV__ENST00000360537.6_1_6:144269364-144269445:-|nuORF 13.90604991867851 0.3810395177745597 1 SVSW 4 -1 38.276 0 0 3.3827 0 0 654.313768455275 0 654.313768455275 0 20.764837301042718 0 0 0 1 0 0.3494850021680094 0 SVSW 3.3827 - 333 NaN NaN 114510.9 NaN 14500 3534 18028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18038 75.342 NaN 4927700 35 0 2154600 0.327 + 17279 LYPQFMFHL 9 89 606.2992298592186 1210.583906785237 2 606.2999877929688 MULTI HCD FTMS 0 0 0 18037 2555359.5 0.15962916646130187 11 -0.27727508544921875 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 97.07464715276575 0.004340583992084827 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}] 9 0 + 87.392 0 0 7.219 7.219 92.622 0 0 0 56.99839547105397 3.65279269351241 3.65279269351241 15.902639302688954 0 2.2104093769761874 2 0 0.6694451763165201 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];{I|L}YPQ{M(Oxidation (M))|F}C[VG]{[RE]|[WV]};{I|L}YP[AG]{M(Oxidation (M))|F}C[VG]{[RE]|[WV]};{I|L}Y{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}C[VG]{[RE]|[WV]};{I|L}Y{I|L}{[C(Carbamidomethyl (C))E]|[WC]}AAS{[RE]|[WV]};{I|L}Y{I|L}{[C(Carbamidomethyl (C))E]|[WC]}[YT][H{I|L}];{I|L}Y{I|L}{[C(Carbamidomethyl (C))E]|[WC]}[QT]{[RE]|[WV]};[RH]P[DG]{M(Oxidation (M))|F}Q[NG][{I|L}A];[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PG]P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.219;5.9054;5.2604;4.5034;3.5937;3.1272;2.7326;2.713;0.98199;0.95994 +;-;-;-;-;-;-;-;-;- + 1332 + NaN NaN 813023.4 NaN 14501 3535 18037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18039 75.346 NaN 2448900 35 0 338320 0.261 + 1213 AYLLYSLHL 9 78 546.8081024309009 1091.6016519286018 2 546.8082885742188 MULTI HCD FTMS 0 0 0 18037 1011380.75 0.17280529552207236 -4 0.09764862060546875 2 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 179.2298980043202 1.129651853483471E-12 1 AY{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 108.25 0 0 9.9163 9.9163 90.609 0 0 0 3.684151806525392 3.684151806525392 3.684151806525392 3.684151806525392 0 3.1989700043360187 1.6989700043360187 1.3684151806525389 0 + + AY{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}S{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YSH{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}SH{I|L}{I|L};{I|L}{I|L}YAYS{I|L}H{I|L};[Y{I|L}]A{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}T[YV]H{I|L};[Y{I|L}]AY{I|L}S{I|L}H{I|L};[Y{I|L}]{I|L}AYS{I|L}H{I|L} 9.9163;9.5788;8.4805;8.2491;7.1507;6.8112;6.7902;6.6361;5.6919;5.6919 +;+;-;-;-;-;-;-;-;- + 1189 + NaN NaN 450112.9 NaN 14502 3535 18037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18040 75.35 NaN 520500 35 0 77385 0.261 + 4441 EYGPIHILW 9 87 564.2978517852029 1126.5811506372056 2 564.2981567382812 MULTI HCD FTMS 0 0 0 18037 176284.078125 0.15385823962159498 8 -0.20925140380859375 3 Unmodified _EYGPIHILW_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 78.44472497914707 0.006355638934919545 1 [YE]GP[H{I|L}]{I|L}{I|L}W 9 0 + 36.123 0 0 3.2065 3.2065 86.712 0 0 0 17.310990509216502 12.807802886139548 12.807802886139548 17.166987712964506 0 0.9802046884880937 1.2218487496163564 0 0 + + [YE]GP[H{I|L}]{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[KT][TA]W{[CT]|[{M(Oxidation (M))|F}G]} 3.2065;1.6826 +;- + 244 + NaN NaN 159129.5 NaN 14503 3535 18037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18041 75.353 NaN 236470 35 0 19379 0.261 + 6673 FPNEVSVVL 9 53 502.27676413564103 1002.5389753380821 2 502.276611328125 MULTI HCD FTMS 0 0 0 18037 87290.734375 0.35385460727419676 4 -0.09795379638671875 4 Unmodified _FPNEVSVVL_ ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1 18.1463463914782 0.20357593197100715 1 V{I|L} 2 7 25.969 0 0 2.5903 0 0 772.3777926863045 0 772.3777926863045 0 6.583624920952499 0 0 0 0.5 0 0 0 + V{I|L} 2.5903 + + 91 NaN NaN 120158.4 NaN 14504 3535 18037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18042 75.357 NaN 122120 35 0 9662.2 0.262 -1 LSSGQCGG 8 46 404.16961921983085 806.3246855064617 2 404.1701354980469 MULTI HCD FTMS 0 0 0 18037 35295.0703125 0.0034259750917692605 124 -2.6566390991210938 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LSSGQC(Carbamidomethyl (C))GG_ ENST00000476870.5_1_7:100468185-100470922:+|nuORF 4.75600775471527 0.5349361699807423 1 Y 1 -1 5.3567 0 0 0.66433 0 0 185.04800604008227 455.17673669986567 640.2247427399479 0 0 0 0 0 0.4247425010840047 0 0 0 Y 0.66433 - 2 + NaN NaN 101707.1 NaN 14505 3535 18037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18043 75.36 NaN 148930 35 0 37151 0.261 -1 IPMPDFDL 8 40 482.2283576752907 962.4421624173814 2 482.2283020019531 MULTI HCD FTMS 0 0 0 18037 89643.078125 0.5512974642644195 -9 0.23777008056640625 6 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 1 {M(Oxidation (M))|F}D{I|L} 3 -1 28.812 0 0 2.9937 0 0 569.2519398419937 0 569.2519398419937 0 14.107281392838827 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}D{I|L} 2.9937 + + 32 NaN NaN 114185.8 NaN 14506 3535 18037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18045 75.365 NaN 7962800 35 0 838750 0.327 + 32068 VYQLRFQFL 9 127 607.3395942241465 1212.6646355150929 2 607.3399047851562 MULTI HCD FTMS 0 0 0 18044 4719426 0.7373726373668096 -1 0.02285003662109375 1 Unmodified _VYQLRFQFL_ ENSG00000068654|ENST00000263857|POLR1A 164.5152109175784 6.8106583686994766E-09 1 VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 9 0 + 104.28 0 0 8.5996 8.5996 92.405 0 0 0 43.72363747448347 10.202264589233394 10.202264589233394 9.208187539523749 0 2.9604093769761874 1.3979400086720375 0 1.863982988912431 + + VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}{I|L}G{[MS]|[{M(Oxidation (M))|F}A]};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[YV][AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV][YK]RPQ{M(Oxidation (M))|F}{I|L};{I|L}YN{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 8.5996;7.8403;7.6063;7.3039;7.0222;6.9642;6.8469;6.8469;6.6386;6.5899 +;-;+;-;-;-;-;-;-;- + 18804 + NaN NaN 1295462.5 NaN 14507 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18046 75.369 NaN 714260 35 0 83961 0.261 + 12844 KYFEVPSVLL 10 89 597.8422121264203 1193.6698713196406 2 597.8425903320312 MULTI HCD FTMS 0 0 0 18044 227482.984375 0.12455574930062191 7 -0.1864013671875 2 Unmodified _KYFEVPSVLL_ ENSG00000131966|ENST00000254286|ACTR10 37.07464296494664 0.1707926854601146 1 VPW{I|L}{I|L} 5 6 40.974 0 0 3.4326 0 0 567.2679798244425 0 567.2679798244425 0 21.392229716394 0 0 0 1.3807196863200843 0 0 0 VPW{I|L}{I|L} 3.4326 - 897 NaN NaN 189433.1 NaN 14508 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18047 75.373 NaN 542900 35 0 36659 0.261 + 11602 IYTPIFNEY 9 101 580.2878815818193 1158.5612102304385 2 580.2877197265625 MULTI HCD FTMS 0 0 0 18044 202836.125 0.37609378976337476 5 -0.130706787109375 3 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 72.96794272382148 0.008127836904478181 1 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY 9 0 + 66.326 0 0 5.7248 5.7248 88.327 0 0 0 9.392874642439082 14.973024840566467 9.392874642439082 9.392874642439082 0 1.916386562212267 1.154901959985743 0.6861818737241735 0.28872548999643577 + + [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}GGEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}[YE]N;[Y{I|L}]GY{[QS]|[NT]}{I|L}TTN;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}GGEY;[Y{I|L}]T[{I|L}P]E{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y;[Y{I|L}]GY{[CP]|[EA]}KTTN;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}[YE]N;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F} 5.7248;4.9141;4.6808;4.0141;3.985;3.8701;3.6094;3.5154;3.2033;3.1791 +;-;-;-;-;-;-;-;-;- + 2312 NaN NaN 162848.1 NaN 14509 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18048 75.376 NaN 672680 35 0 59499 0.261 -1 ECRQCGKTF 9 92 593.2618143171305 1184.509075701061 2 593.261474609375 MULTI HCD FTMS 0 0 0 18044 206868.109375 0.9561710947505397 -2 0.0523223876953125 4 2 Carbamidomethyl (C) _EC(Carbamidomethyl (C))RQC(Carbamidomethyl (C))GKTF_ ENSG00000130803|ENST00000247956|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317 18.1463463914782 0.20357593197100715 1 {M(Oxidation (M))|F}DET{M(Oxidation (M))|F} 5 -1 38.984 0 0 3.2912 0 0 527.25688368965 0 527.25688368965 0 31.197887582883936 0 0 0 0.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}DET{M(Oxidation (M))|F} 3.2912 - 468 NaN NaN 189909.6 NaN 14510 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18049 75.379 NaN 776190 35 0 98855 0.261 + 15531 LPDPIIIHL 9 85 515.8183639924854 1029.6221750517707 2 515.8185424804688 MULTI HCD FTMS 0 0 0 18044 233804.609375 0.2887392336612923 -5 0.1204986572265625 5 Unmodified _LPDPIIIHL_ ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B 92.8221339359638 0.0044520161739443126 1 {I|L}PDP{I|L}{I|L}{I|L}H{I|L} 9 0 + 104.21 0 0 10.121 10.121 96.781 0 0 0 87.74679060585625 10.642492736872597 10.642492736872597 18.882104921644455 0 3.024227503252014 1.5228787452803376 0.7134679910804405 0 + + {I|L}PDP{I|L}{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}{I|L}H{I|L};[DP]{I|L}P{I|L}{I|L}{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}{I|L}H{I|L};[DP]{I|L}{I|L}P{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}H{I|L}{I|L};[DP]{I|L}P{I|L}{I|L}H{I|L}{I|L};[{I|L}P]D{I|L}P{I|L}H{I|L}{I|L};[{I|L}P]D{I|L}{I|L}P{I|L}H{I|L};[{I|L}P]{I|L}DP{I|L}{I|L}H{I|L} 10.121;8.2873;7.8786;7.7496;7.3409;7.3383;6.9296;6.8006;6.6792;6.6792 +;+;-;-;-;-;-;-;-;- + 1306 + NaN NaN 201165.9 NaN 14511 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18050 75.383 NaN 346510 35 0 72680 0.261 + 29111 TYGPSFPAF 9 54 493.7344578448239 985.4543627564478 2 493.7346496582031 MULTI HCD FTMS 0 0 0 18044 130824.703125 0.6708525875652582 -1 0.02285003662109375 6 Unmodified _TYGPSFPAF_ ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant 81.61307344734483 0.005330412723537057 1 [YT]G[PS]{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 9 0 + 91.009 0 0 9.2352 9.2352 97.473 0 0 0 25.642492736872597 66.57190309977331 25.642492736872597 35.95483957839335 0 2.7614393726401687 2 1.2302046884880937 0 + + [YT]G[PS]{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ET]|[MV]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATG[{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F};[YT]G[PS]W[Y{I|L}];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ET]|[MV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}A{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}TG[{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TP][{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}T][TP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HV][HN][HV] 9.2352;5.5867;4.1128;3.6722;3.4204;3.3615;3.0516;1.7482;1.0849;0.69311 +;-;-;-;-;-;-;-;-;- + 253 NaN NaN 142177 NaN 14512 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18051 75.386 NaN 609570 35 0 93695 0.261 + 1070 AYGWVSATF 9 63 501.240019037964 1000.465485142728 2 501.2404479980469 MULTI HCD FTMS 0 0 0 18044 127692.8671875 0.4312412556212827 -3 0.0850372314453125 7 Unmodified _AYGWVSATF_ ENSG00000148110|ENST00000375344|MFSD14B;nc|ENSG00000148110|Q5SR56-2|MFSD14B 117.59872219059416 0.0017018906413822257 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWVSAT{M(Oxidation (M))|F} 9 0 + 86.877 0 0 8.6837 8.6837 95.15 0 0 0 18.675996869535183 43.45606484622735 18.675996869535183 16.760912590556813 0 2.8807196863200843 1.6989700043360187 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWVSAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[QD]|[EN]|[WG]|[KD]|[RS]}SAT{M(Oxidation (M))|F};[YQ]WVSAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWV[TA]S{M(Oxidation (M))|F};{I|L}[QP][HT]SAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WK]DAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[QD]|[EN]|[WG]|[KD]|[RS]}[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWVD[YK];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}[KT]AT{M(Oxidation (M))|F} 8.6837;7.0084;6.4343;6.4117;5.6819;5.4633;5.2362;4.7364;4.6639;4.5375 +;-;-;-;-;-;-;-;-;- + 760 NaN NaN 174851.2 NaN 14513 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18052 75.389 NaN 259580 35 0 30898 0.261 + 11676 IYYDVNAGLES 11 56 622.2939199023187 1242.5732868714374 2 622.7955932617188 MULTI HCD FTMS 0 0 0 18044 66452.7265625 0.32742278919388995 -8 0.205230712890625 8 Unmodified _IYYDVNAGLES_ REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1 20.580933911654288 0.27776005981656166 1 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 10 -1 + 75.15 0 0 6.048 6.048 86.025 0 0 0 6.460828060918828 6.460828060918828 6.460828060918828 6.460828060918828 0 2.548455006504028 2 0 0 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]YD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YYD[HV]{[CA]|SS}{I|L}{M(Oxidation (M))|F};{I|L}YY[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}][WH]{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F};[Y{I|L}][WH]{[DS]|[MA]|[CV]|TT}Y{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[YG][W{I|L}]HH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[PA]{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[PA]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}Y{I|L}{M(Oxidation (M))|F} 6.048;5.528;5.1862;5.1804;4.8422;4.0558;3.5929;2.086;1.8894;1.4265 -;-;-;-;-;-;-;-;-;- 175 + NaN NaN 124265.2 NaN 14514 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18053 75.393 NaN 280470 35 0 15187 0.261 + 4557 EYLKNVLLQF 10 65 633.8581935794812 1265.7018342257622 2 633.8585205078125 MULTI HCD FTMS 0 0 0 18044 78351.8125 0.6815916803808039 -5 0.1204986572265625 9 Unmodified _EYLKNVLLQF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000135968|ENST00000309863|GCC2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF 61.60191391372663 0.03559593591905874 1 {I|L}{I|L}Q{M(Oxidation (M))|F} 4 6 39.737 0 0 3.1395 0 0 746.396061375956 0 746.396061375956 0 17.764662139152456 0 0 0 1.6237125054200234 0 0 0.7302046884880937 + {I|L}{I|L}Q{M(Oxidation (M))|F} 3.1395 + + 135 + NaN NaN 124769.7 NaN 14515 3536 18044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18055 75.398 NaN 1528500 35 0 85532 0.327 + 17356 LYQDKFPFF 9 109 602.8051543740269 1203.5957558148536 2 602.8055419921875 MULTI HCD FTMS 0 0 0 18054 507378.59375 0.44797359877080184 6 -0.1535797119140625 1 Unmodified _LYQDKFPFF_ ENSG00000144028|ENST00000323853|SNRNP200 100.0907132914201 0.004261551473353346 1 {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 98.599 0 0 8.192 8.192 90.252 0 0 0 7.614393726401687 7.614393726401687 7.614393726401687 7.614393726401687 0 2.798455006504028 2 0.3807196863200844 0.5994850021680094 + + {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]QDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG]DK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]NEK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]DK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YQ[YG]{I|L}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GGEK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG][YG]{I|L}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]QNY{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}TVDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.192;7.5594;7.427;6.8101;6.7943;6.5098;6.045;5.458;5.227;4.9412 +;+;-;-;-;-;-;-;-;- + 11905 + NaN NaN 310594.8 NaN 14516 3537 18054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18056 75.402 NaN 431040 35 0 53034 0.261 + 10158 IFSKIVSLF 9 72 527.3208553400241 1052.627157746848 2 527.3206176757812 MULTI HCD FTMS 0 0 0 18054 160810.53125 0.7749443538415747 -2 0.05567169189453125 2 Unmodified _IFSKIVSLF_ ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B 57.72198328787511 0.020768266150574023 1 KS{I|L}{M(Oxidation (M))|F} 4 5 45.059 0 0 4.2806 0 0 559.3383656232437 0 559.3383656232437 0 20.634366181927497 0 0 0 1.305462187404089 0 0.7302046884880937 0 KS{I|L}{M(Oxidation (M))|F} 4.2806 - 57 NaN NaN 152587.5 NaN 14517 3537 18054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18057 75.406 NaN 185370 35 0 24482 0.261 + 14861 LKISPILVL 9 54 498.3467260178794 994.6788991025588 2 498.34722900390625 MULTI HCD FTMS 0 0 0 18054 67064.265625 0.8967365665420768 1 -0.01616668701171875 3 Unmodified _LKISPILVL_ REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1 22.736283301280096 0.1639198954644489 1 {I|L}V{I|L} 3 -1 33.94 0 0 3.4122 0 0 651.4330311505875 0 651.4330311505875 0 15.012262311882765 0 0 0 0.9247425010840047 0 0 0 {I|L}V{I|L} 3.4122 + + 70 NaN NaN 113745.3 NaN 14518 3537 18054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18058 75.409 NaN 70395 35 0 5159.1 0.261 + 21382 PVEGRRIS 8 50 457.2642318855019 912.5139108378038 2 457.264404296875 MULTI HCD FTMS 0 0 0 18054 60237.51171875 0.3259827211941829 38 -0.6229705810546875 4 Unmodified _PVEGRRIS_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C 2.577480529830294 0.5381683276125971 1 W 1 -1 13.495 0 0 1.4789 0 0 708.4237141598726 0 708.4237141598726 0 9.313637641589876 0 0 0 0 0 0 0 W 1.4789 - 23 + NaN NaN 93449.7 NaN 14519 3537 18054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18060 75.414 NaN 6696000 35 0 659470 0.327 + 13410 KYPENFFLL 9 111 585.8132425088911 1169.6119320845821 2 585.8136596679688 MULTI HCD FTMS 0 0 0 18059 4522259 0.022809877796092785 -29 0.7661819458007812 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 83.42873516780209 0.004742894019233849 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 79.312 0 0 6.7811 6.7811 87.984 0 0 0 7.870156338638594 16.478174818886373 7.870156338638594 7.870156338638594 0 2.4604093769761874 0 0.4247425010840047 1.2658715643802767 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PG{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YN][VP]{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QG{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6.7811;6.1082;5.9938;5.3939;5.3209;5.3209;5.1312;5.0544;4.7586;4.721 +;-;-;-;-;-;-;-;-;- + 7694 NaN NaN 590154.2 NaN 14520 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18061 75.418 NaN 1294900 35 0 300680 0.261 + 4510 EYKIAFPYL 9 73 572.3080926403767 1142.6016323475533 2 572.3080444335938 MULTI HCD FTMS 0 0 0 18059 573297.125 0.1935485599837274 7 -0.19281005859375 2 Unmodified _EYKIAFPYL_ ENSG00000174231|ENST00000304992|PRPF8 111.28704002717404 0.0027322905094575235 1 [YE]K{I|L}AEPY 8 2 62.062 0 0 5.4316 0 0 0 146.0827722680431 146.0827722680431 25.94212497064703 0 0 0 0 1.6861818737241734 1.3010299956639813 1.5356668758921828 0 [YE]K{I|L}AEPY 5.4316 - 1690 NaN NaN 275212.7 NaN 14521 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18062 75.422 NaN 775540 35 0 128570 0.261 -1 MPMNVADLI 9 70 510.2483975056234 1018.4822420780469 2 510.2488098144531 MULTI HCD FTMS 0 0 0 18059 419964.21875 0.6232353493592048 -6 0.15348052978515625 3 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 36.12702656103203 0.08312389501731911 1 {NN|[MP]|[D{I|L}]|[EV]}A{[C(Carbamidomethyl (C))E]|[WC]}AD{I|L} 8 -1 56.432 0 0 5.5408 0 0 0 128.07075335696223 128.07075335696223 41.726759565325295 0 0 0 0 1.5 1.5228787452803376 0 0.3807196863200844 {NN|[MP]|[D{I|L}]|[EV]}A{[C(Carbamidomethyl (C))E]|[WC]}AD{I|L} 5.5408 - 238 NaN NaN 192834.9 NaN 14522 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18063 75.425 NaN 933640 35 0 128730 0.261 + 28501 TPQFPDMIL 9 98 539.2679517160655 1076.5213504989308 2 539.2687377929688 MULTI HCD FTMS 0 0 0 18059 439514.4375 0.023512191888062747 -38 0.9943466186523438 4 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 47.594388314883695 0.03493607795751234 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 57.85 0 0 5.3738 5.3738 85.908 0 0 0 8.96005508894838 16.478174818886373 8.96005508894838 8.96005508894838 0 1.3494850021680094 1.5228787452803376 0.8703715150305282 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]TE{M(Oxidation (M))|F}{I|L}{I|L} 5.3738;4.5415;3.4658 -;-;- 531 NaN NaN 228560.2 NaN 14523 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18064 75.428 NaN 590970 35 0 136860 0.261 + 1735 CKKYYVFL 8 79 532.2861195931562 NaN 0 532.2718505859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _CKKYYVFL_ REV__ENSG00000141252|ENST00000437048|VPS53;REV__ENST00000572607.1_1_17:454958-465900:-|nuORF;REV__nc|ENSG00000141252|Q5VIR6-1|VPS53;REV__nc|ENSG00000141252|Q5VIR6-2|VPS53;REV__nc|ENSG00000141252|Q5VIR6-3|VPS53 14.581692164780916 0.38795613832665576 1 {I|L}G{I|L}WHA 6 -1 26.375 0 0 2.4822 0 0 165.1076371575703 217.06157861881096 382.1692157763813 0 0 0 0 0 0 0 0 0 {I|L}G{I|L}WHA 2.4822 - 195 + NaN NaN 172264.2 NaN 14524 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18065 75.432 NaN 814350 35 0 85740 0.261 + 35589 YYIFIPSKF 9 78 589.318302735094 1176.622052536988 2 589.8195190429688 MULTI HCD FTMS 0 0 0 18059 200704.3125 0.008099843805919806 54 -0.8710250854492188 6 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 69.10491478415734 0.009377850133389008 1 YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F} 9 2 + 60.601 0 0 5.1504 5.1504 84.07 0 0 0 5.275202789917657 14.973024840566467 5.275202789917657 5.275202789917657 0 2.1549471895720984 1.6989700043360187 0 0 YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F} 5.1504;4.7021;3.2966;2.0234 -;-;-;- 521 NaN NaN 204092.8 NaN 14525 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18066 75.435 NaN 434360 35 0 72474 0.261 + 26754 SYFDEPVEL 9 83 549.7539744220508 1097.4933959109014 2 549.75244140625 MULTI HCD FTMS 0 0 0 18059 111532.8671875 0.6205727130188408 -3 0.07183837890625 7 Unmodified _SYFDEPVEL_ ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 49.93300154707207 0.03166451819912738 1 E[VP]E{I|L} 5 4 35.713 0 0 3.2541 0 0 512.1906605451187 0 512.1906605451187 0 16.072099696478688 0 0 0 1.274227503252014 0 0.4247425010840047 0 + E[VP]E{I|L} 3.2541 + + 258 NaN NaN 157532.3 NaN 14526 3538 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18068 75.44 NaN 615630 35 0 197490 0.327 -1 0 64 413.1934236862167 824.3722944392334 2 413.19354248046875 MULTI HCD FTMS 0 0 0 18067 279849.09375 0.21099069726676253 91 -1.8578948974609375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 186698.2 NaN 14527 3539 18067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18069 75.444 NaN 619310 35 0 156050 0.261 + 11260 IYLPYLHEW 9 63 617.3185974165319 1232.6226418998638 2 617.3184204101562 MULTI HCD FTMS 0 0 0 18067 337189.5 0.7587091417510594 -2 0.0422821044921875 2 Unmodified _IYLPYLHEW_ ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF 44.40701690623563 0.04511410083598184 1 [Y{I|L}]{I|L}P[Y{I|L}]{[YC]|[HE]}W 9 0 + 47.72 0 0 3.8714 3.8714 83.308 0 0 0 10.272435506827868 28.74031036907443 10.272435506827868 8.010299956639805 0 1.5 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}P[Y{I|L}]{[YC]|[HE]}W;[Y{I|L}]{I|L}P{[YC]|[HE]}[Y{I|L}]W;[Y{I|L}]P{I|L}[Y{I|L}]{[YC]|[HE]}W;[Y{I|L}]P{I|L}{[YC]|[HE]}[Y{I|L}]W 3.8714;3.2215;3.0787;2.4288 +;-;-;- + 108 NaN NaN 179920.5 NaN 14528 3539 18067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18070 75.448 NaN 381590 35 0 36953 0.262 -1 VYAEIMAVL 9 68 512.7727494583538 1023.5309459835076 2 512.7728271484375 MULTI HCD FTMS 0 0 0 18067 114813.359375 0.3853512150062234 8 -0.19860076904296875 3 Oxidation (M) _VYAEIM(Oxidation (M))AVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 26.88365393820708 0.12808753336095696 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV{I|L} 9 -1 + 57.145 0 0 5.5831 5.5831 90.145 0 0 0 16.68965961114221 29.697369754785257 16.68965961114221 18.917527312129977 0 1.274227503252014 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]{I|L}[EC]V{I|L};{[VA]|[{I|L}G]}[YE]{I|L}{M(Oxidation (M))|F}AV{I|L} 5.5831;3.7348;3.335 -;-;- 397 NaN NaN 141861.8 NaN 14529 3539 18067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18071 75.451 NaN 319570 35 0 43136 0.261 + 25534 SFLIAAGEIW 10 73 553.7971166356057 1105.5796803380113 2 554.2843017578125 MULTI HCD FTMS 0 0 0 18067 45409.91796875 1 0 0 4 Unmodified _SFLIAAGEIW_ REV__ENSG00000058668|ENST00000357681|ATP2B4;REV__nc|ENSG00000058668|P23634-2|ATP2B4;REV__nc|ENSG00000058668|P23634-3|ATP2B4;REV__nc|ENSG00000058668|P23634-4|ATP2B4;REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000058668|P23634-7|ATP2B4;REV__nc|ENSG00000058668|P23634-8|ATP2B4;REV__nc|ENSG00000058668|P23634|ATP2B4 22.736283301280096 0.29844449404982915 1 {[CT]|[{M(Oxidation (M))|F}G]}A{M(Oxidation (M))|F}A[HK]{I|L}C{I|L} 10 -1 + 44.162 0 0 3.9944 3.9944 85.583 0 0 0 0.339322000954283 0.339322000954283 0.339322000954283 9.486293160972963 0 0.6989700043360187 0 0.3807196863200844 0 {[CT]|[{M(Oxidation (M))|F}G]}A{M(Oxidation (M))|F}A[HK]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[NG]{I|L}{I|L}DD;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}A[HK]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VG]Q{I|L}{I|L}DD;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[NG]{I|L}[NS]AA;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VG][AG]{I|L}{I|L}DD;[{M(Oxidation (M))|F}T]{I|L}{I|L}YG{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[HV][HK]{I|L}C{I|L};Q[RH][HS]{I|L}{I|L}C{I|L};{[DS]|[MA]|[CV]|TT}[YK][HK]{I|L}C{I|L} 3.9944;3.1364;3.0593;2.5747;1.7624;1.7457;1.6407;1.4763;1.4404;1.3633 -;-;-;-;-;-;-;-;-;- 327 NaN NaN 125919.8 NaN 14530 3539 18067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18072 75.454 NaN 168860 35 0 10869 0.261 + 16761 LYDIILKNF 9 74 569.8289992892563 1137.6434456453126 2 569.8295288085938 MULTI HCD FTMS 0 0 0 18067 51699.2890625 0.01977787801013066 39 -0.6062393188476562 5 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 51.629811660486645 0.02929079705179888 1 [Y{I|L}]D{I|L}{I|L}{I|L}K{M(Oxidation (M))|F}N 9 2 + 63.572 0 0 5.588 5.588 90.069 0 0 0 16.641974908773918 33.38222205381598 16.641974908773918 18.117515817243515 0 2.2302046884880937 1.6989700043360187 0 0 [Y{I|L}]D{I|L}{I|L}{I|L}K{M(Oxidation (M))|F}N;[YE]V{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}N;[YE]V{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{M(Oxidation (M))|F}[K{I|L}]{I|L}N 5.588;3.9955;3.4768;3.1861;2.7923 -;-;-;-;- 481 NaN NaN 102967 NaN 14531 3539 18067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18073 75.458 NaN 113020 35 0 28339 0.264 + 11738 KDHPRAQANLP 11 44 416.227677501293 NaN 0 416.2277526855469 PEAK HCD FTMS 0 0 0 18067 13197.6201171875 0.6180202153125692 1 -0.0228271484375 6 Unmodified _KDHPRAQANLP_ ENSG00000187994|ENST00000591812|RINL;ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL 1.0714618166137932 0.3390807148598227 1 N 1 10 3.4949 0 0 0.42084 0 0 289.1610912312985 424.2092684381469 713.3703596694454 0 0 0 0 0 0 0 0 0 + N 0.42084 + + 2 + NaN NaN 92538.1 NaN 14532 3539 18067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18075 75.463 NaN 1122400 35 0 121730 0.327 + 34394 YPEPFLIKL 9 98 560.3260596254472 1118.6375663176943 2 560.326171875 MULTI HCD FTMS 0 0 0 18074 693524.0625 0.4605751244767345 3 -0.088470458984375 1 Unmodified _YPEPFLIKL_ ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP 89.40071534611396 0.0045416704840156395 1 YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L} 9 0 + 85.249 0 0 7.6208 7.6208 93.579 0 0 0 55.41891813942673 12.777172647677006 12.777172647677006 17.487737688117235 0 2.473197507588033 1.5228787452803376 0.3807196863200844 0.28872548999643577 + + YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L};YP{M(Oxidation (M))|F}[EP]{I|L}{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]Y{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}Y[EP]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}Y[KP]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y[EP]{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]{I|L}YK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}[EP]YK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y{I|L}[EP]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y{I|L}[KP]E{I|L} 7.6208;6.0575;2.8158;2.7052;2.464;2.3294;2.2787;2.2787;2.2188;1.9777 +;-;-;-;-;-;-;-;-;- + 1086 + NaN NaN 254358.7 NaN 14533 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18076 75.467 NaN 2063600 35 0 189810 0.261 + 7051 FQFNCWTDR 9 119 608.7633743183553 1215.5121957035105 2 608.7636108398438 MULTI HCD FTMS 0 0 0 18074 317807.1875 0.6008159417743496 3 -0.088470458984375 2 Unmodified _FQFNCWTDR_ REV__ENSG00000243414|ENST00000427199|TICAM2;REV__nc|ENSG00000243414|Q86XR7-2|TICAM2 6.723162845929126 0.3000504726104499 1 [YV][YK]RVQ{M(Oxidation (M))|F} 8 -1 33.37 0 0 2.7453 0 0 0 128.91177500187146 128.91177500187146 3.640078085766092 0 0 0 0 0.2614393726401688 1.3979400086720375 0 0.6421590589602533 [YV][YK]RVQ{M(Oxidation (M))|F} 2.7453 - 9425 NaN NaN 396061.8 NaN 14534 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18077 75.471 NaN 416730 35 0 37992 0.261 + 221 AEYERQQNL 9 90 575.7790029674118 1149.5434530016234 2 575.792236328125 MULTI HCD FTMS 0 0 0 18074 27824.830078125 0.030819595182975848 68 -1.2805252075195312 3 Unmodified _AEYERQQNL_ REV__ENSG00000161204|ENST00000429586|ABCF3;REV__ENST00000468892.5_1_3:183907488-183910505:+|nuORF;REV__ENST00000473311.5_1_3:183906074-183911483:+|nuORF;REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3 13.042465956692817 0.2476723265019929 1 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC] 9 -1 + 36.89 0 0 3.2091 3.2091 80.586 0 0 0 3.015935807182018 3.015935807182018 3.015935807182018 3.015935807182018 0 0 0.958607314841775 0.5242275032520141 0 [YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC];M{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[TP]TN{[QN]|[E{I|L}]|[KN]};M[MT]{I|L}[TP]TN{[QN]|[E{I|L}]|[KN]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{M(Oxidation (M))|F}Y{I|L}[MT];[YT]VHE{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};[HQ]VY{M(Oxidation (M))|F}TN{[QN]|[E{I|L}]|[KN]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[TP]TN{[QN]|[E{I|L}]|[KN]};[YT]VHE{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[Y{I|L}]S{I|L}{M(Oxidation (M))|F}Y{I|L}[MT];[YT]VHE{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]} 3.2091;2.9467;2.5084;2.4839;2.1779;2.1776;2.0945;1.916;1.6982;1.6008 -;-;-;-;-;-;-;-;-;- 1657 NaN NaN 156029.2 NaN 14535 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18078 75.474 NaN 1036300 35 0 144440 0.261 + 6782 FPQYVMDVL 9 93 564.2757274188456 1126.536901904491 2 564.2757568359375 MULTI HCD FTMS 0 0 0 18074 343677.5625 0.400627981937924 -5 0.12078094482421875 4 Oxidation (M) _FPQYVM(Oxidation (M))DVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 60.07390631473393 0.0174780869009295 1 [VS]WYV{M(Oxidation (M))|F}DV{I|L} 9 3 + 56.707 0 0 5.0338 5.0338 83.522 0 0 0 4.436974992327123 12.969837217489513 4.436974992327123 4.436974992327123 0 1.829689690656103 0 0.5891368308784531 0 [VS]WYV{M(Oxidation (M))|F}DV{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[PA]YV{M(Oxidation (M))|F}DV{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}Y[PG]{M(Oxidation (M))|F}DV{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}V[W{M(Oxidation (M))|F}]A{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}W{[MS]|[{M(Oxidation (M))|F}A]}V{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}VS[WM]{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}W{I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}W{I|L}{I|L}{[CT]|[{M(Oxidation (M))|F}G]};[VS]WYVV{[{M(Oxidation (M))|F}D]|MM}{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}VS{I|L}[WM] 5.0338;4.6399;3.9237;3.8937;3.8445;3.605;3.4902;3.1799;3.0161;2.7603 -;-;-;-;-;-;-;-;-;- 1152 NaN NaN 248874.7 NaN 14536 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18079 75.477 NaN 269750 35 0 35193 0.261 -1 VPMFEDNL 8 55 490.7232690777627 979.4319852223255 2 490.72357177734375 MULTI HCD FTMS 0 0 0 18074 118047.390625 0.395070638112379 12 -0.2956085205078125 5 Oxidation (M) _VPM(Oxidation (M))FEDNL_ ENSG00000169515|ENST00000307522|CCDC8 12.531546534597751 0.5015908124873912 1 {M(Oxidation (M))|F}N{I|L} 3 -1 31.198 0 0 3.1853 0 0 587.2261798229385 0 587.2261798229385 0 17.703037561203843 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}N{I|L} 3.1853 - 114 NaN NaN 122908.6 NaN 14537 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18080 75.481 NaN 597150 35 0 42069 0.261 + 4664 EYNPYSWNL 9 96 593.2618143171305 1184.509075701061 2 593.7633666992188 MULTI HCD FTMS 0 0 0 18074 118781.140625 0.6119841943384084 4 -0.11122894287109375 6 Unmodified _EYNPYSWNL_ ENSG00000064601|ENST00000646241|CTSA;ENST00000607814.5_1_20:44520477-44520965:+|nuORF 21.590151480376914 0.17382222009858564 1 QDY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SWVQ 9 5 + 33.341 0 0 2.8147 2.8147 84.863 0 0 0 18.915987161317695 1.7509252086925322 1.7509252086925322 10.202127176348128 0 1.4500612056866313 0 0.23965182871044374 0 QDY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SWVQ;[{M(Oxidation (M))|F}T]G{[NV]|[RG]}SE[PS]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][RN]SE[PS]T{M(Oxidation (M))|F};QDY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QQP{M(Oxidation (M))|F};Y{[WT]|[RM]}ESSWVQ;Q[R{M(Oxidation (M))|F}]S[MT]E{[WT]|[RM]};Q[R{M(Oxidation (M))|F}][WD]WT{M(Oxidation (M))|F};QDY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}{[WT]|[RM]};QM{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))N]{I|L}{I|L};QD[{M(Oxidation (M))|F}V][DG]AWT{M(Oxidation (M))|F} 2.8147;1.9534;1.9066;1.8495;1.8009;1.7537;1.7456;1.737;1.6269;1.6017 -;-;-;-;-;-;-;-;-;- 1385 + NaN NaN 179833.1 NaN 14538 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18081 75.484 NaN 151400 35 0 17716 0.262 + 22447 QQLIEVEI 8 47 486.2740691727834 970.5335854123668 2 486.2740478515625 MULTI HCD FTMS 0 0 0 18074 42408.390625 0.023075032408836967 28 -0.4946136474609375 7 Unmodified _QQLIEVEI_ ENSG00000214338|ENST00000525778|SOGA3 18.1463463914782 0.46027927471454505 1 VE{I|L} 3 5 35.445 0 0 3.6521 0 0 611.3261062741269 0 611.3261062741269 0 25.42796583575644 0 0 0 0.9247425010840047 0 0 0 + VE{I|L} 3.6521 + + 23 NaN NaN 107008.7 NaN 14539 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18082 75.487 NaN 355410 35 0 25154 0.261 -1 0 76 612.2690474290101 1222.5235419248202 2 612.2691650390625 MULTI HCD FTMS 0 0 0 18074 56702.1796875 0.021854553396532448 -14 0.358551025390625 8 NaN NaN 1 D{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 23.505 0 0 1.9227 0 0 716.2444935529312 0 716.2444935529312 0 12.70303756120384 0 0 0 0.3494850021680094 0 0 0 D{M(Oxidation (M))|F}{I|L}{I|L} 1.9227 - 300 NaN NaN 134404.7 NaN 14540 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18083 75.491 NaN 285080 35 0 17531 0.262 + 33165 YEQGDHLF 8 74 504.7254472328201 1007.4363415324402 2 505.22686767578125 MULTI HCD FTMS 0 0 0 18074 17727.546875 0.5065586663490712 -2 0.04894256591796875 9 Unmodified _YEQGDHLF_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;REV__TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 9.347437153973935 0.5250182646323369 1 [YT]G 3 -1 30.017 0 0 2.9796 0 0 0 683.2790621393186 683.2790621393186 7.838096733120281 0 0 0 0 0.3054621874040891 2 0 0 [YT]G 2.9796 - 180 + NaN NaN 128007.1 NaN 14541 3540 18074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18085 75.495 NaN 7158800 35 0 1007200 0.327 + 1214 AYLLYSLHL 9 89 546.8081024309009 1091.6016519286018 2 546.8084106445312 MULTI HCD FTMS 0 0 0 18084 4225053 0.7218958164483735 2 -0.055694580078125 1 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 179.2298980043202 1.129651853483471E-12 1 AY{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 108.41 0 0 9.9317 9.9317 90.554 0 0 0 3.5391719390811716 3.5391719390811716 3.5391719390811716 3.5391719390811716 0 3.1989700043360187 1.6989700043360187 1.3851518780601921 0 + + AY{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}S{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YSH{I|L}{I|L};[Y{I|L}]A{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}SH{I|L}{I|L};{I|L}{I|L}YAYS{I|L}H{I|L};{I|L}{I|L}AYYS{I|L}H{I|L};[Y{I|L}]AY{I|L}S{I|L}H{I|L};[Y{I|L}]{I|L}AYS{I|L}H{I|L} 9.9317;9.6075;8.5979;8.3922;7.5305;7.3826;6.8398;6.7059;6.521;6.4322 +;+;-;-;-;-;-;-;-;- + 1227 + NaN NaN 728973.4 NaN 14542 3541 18084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18086 75.5 NaN 563860 35 0 46307 0.261 + 21920 QDYWLSLLF 9 91 592.8025974236541 1183.5906419141081 2 592.802490234375 MULTI HCD FTMS 0 0 0 18084 157614.96875 0.0690513714661355 -37 0.9746246337890625 2 Unmodified _QDYWLSLLF_ nc|ENSG00000173083|Q9Y251-3|HPSE 12.240655878213236 0.2545997876781172 1 V{M(Oxidation (M))|F}{I|L}{I|L} 4 7 36.063 0 0 3.0469 0 0 693.2753163068375 0 693.2753163068375 0 14.42446448380258 0 0 0 0.7134679910804405 0 0 0 V{M(Oxidation (M))|F}{I|L}{I|L} 3.0469 - 594 NaN NaN 163923.7 NaN 14543 3541 18084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18087 75.503 NaN 529420 35 0 80195 0.261 + 15596 LPDYTSPVVL 10 72 552.302694137512 1102.590835341824 2 552.302734375 MULTI HCD FTMS 0 0 0 18084 218658.28125 0.34174941448421864 -4 0.0978851318359375 3 Unmodified _LPDYTSPVVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 36.12702656103203 0.1790159924230938 1 [Y{I|L}]SEPS[VP]V{I|L} 10 4 + 47.923 0 0 4.3464 4.3464 87.282 0 0 0 2.843181179205061 38.45901943275102 2.843181179205061 13.979400086720375 0 1.4247425010840047 0 0.3252574989159953 0 [Y{I|L}]SEPS[VP]V{I|L};[Y{I|L}][DP]TS[VP]V{I|L} 4.3464;3.0785 -;- 323 NaN NaN 164536.2 NaN 14544 3541 18084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18088 75.507 NaN 261530 35 0 25266 0.263 -1 0 67 435.250960108541 868.487367283882 2 435.250732421875 MULTI HCD FTMS 0 0 0 18084 218877.84375 0.527056282919896 58 -0.9815673828125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.3805 0 0 703.4087215092711 0 703.4087215092711 0 1.1877186907143749 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3805 - 30 + NaN NaN 117271.3 NaN 14545 3541 18084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18089 75.51 NaN 483690 35 0 65789 0.261 + -1 ECAATGQA 8 74 404.16961921983085 806.3246855064617 2 404.1702880859375 MULTI HCD FTMS 0 0 0 18084 49747.12890625 0.00482878835516832 130 -2.853790283203125 5 Carbamidomethyl (C) _EC(Carbamidomethyl (C))AATGQA_ REV__ENST00000558850.5_1_14:102783930-102792533:+|nuORF 4.75600775471527 0.5349361699807423 1 C 1 -1 4.9608 0 0 0.61523 0 0 185.04751994989618 515.2328585260374 700.2803784759335 0 0 0 0 0 0.4247425010840047 0 0 0 C 0.61523 + + 51 + NaN NaN 156467.5 NaN 14546 3541 18084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18091 75.515 NaN 5085100 35 0 662600 0.327 + 32069 VYQLRFQFL 9 122 607.3395942241465 1212.6646355150929 2 607.340087890625 MULTI HCD FTMS 0 0 0 18090 2484118.25 0.38812364586996884 5 -0.1234588623046875 1 Unmodified _VYQLRFQFL_ ENSG00000068654|ENST00000263857|POLR1A 164.5152109175784 6.8106583686994766E-09 1 VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 9 0 + 105.11 0 0 8.6678 8.6678 92.488 0 0 0 51.477926622244574 10.20226458923338 10.20226458923338 9.208187539523749 0 2.9604093769761874 1.3010299956639813 0 1.9185800432891433 + + VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}{I|L}A{[CT]|[{M(Oxidation (M))|F}G]};[YV][AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[YV][YK]RPQ{M(Oxidation (M))|F}{I|L} 8.6678;7.9084;7.5402;7.3822;7.3061;6.9965;6.7808;6.7808;6.6264;6.5924 +;-;+;-;-;-;-;-;-;- + 11378 + NaN NaN 686469.6 NaN 14547 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18092 75.519 NaN 1392300 35 0 206910 0.262 + 15532 LPDPIIIHL 9 87 515.8183639924854 1029.6221750517707 2 515.8184814453125 MULTI HCD FTMS 0 0 0 18090 719746.25 0.888857500333825 1 -0.03615570068359375 2 Unmodified _LPDPIIIHL_ ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B 117.59872219059416 0.0017018906413822257 1 {I|L}PDP{I|L}{I|L}{I|L}H{I|L} 9 0 + 107.46 0 0 10.437 10.437 96.697 0 0 0 78.86861734192769 10.642492736872597 10.642492736872597 16.734141530345056 0 2.9876954943324545 1.5228787452803376 0.7742275032520141 0 + + {I|L}PDP{I|L}{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}{I|L}H{I|L};[DP]{I|L}P{I|L}{I|L}{I|L}H{I|L};[DP]{I|L}{I|L}P{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}H{I|L}{I|L};[{I|L}P]{I|L}DP{I|L}{I|L}H{I|L};[{I|L}P]D{I|L}{I|L}P{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}H{I|L}{I|L};[DP]{I|L}P{I|L}{I|L}H{I|L}{I|L} 10.437;8.8118;8.5412;8.4972;8.2266;7.6089;7.4238;7.3767;7.3383;7.2943 +;+;-;-;-;-;-;-;-;- + 1301 + NaN NaN 293561.1 NaN 14548 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18093 75.523 NaN 744240 35 0 190880 0.261 + 11261 IYLPYLHEW 9 59 617.3185974165319 1232.6226418998638 2 617.3185424804688 MULTI HCD FTMS 0 0 0 18090 295437.5 0.66476308445571 1 -0.03615570068359375 3 Unmodified _IYLPYLHEW_ ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF 74.42276476219924 0.007657080072768255 1 [Y{I|L}]{I|L}PY{I|L}HEW 9 0 + 78.536 0 0 6.3714 6.3714 94.035 0 0 0 9.686427890645248 59.085390679490075 9.686427890645248 78.53585325153396 0 2.5682503180159344 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}PY{I|L}HEW 6.3714 + + 128 NaN NaN 201377.6 NaN 14549 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18094 75.526 NaN 820000 35 0 54980 0.261 + 27136 SYMWTINNF 9 94 596.2603752814659 1190.5061976297318 2 596.260009765625 MULTI HCD FTMS 0 0 0 18090 388137.625 0.4044969478734379 -3 0.07514190673828125 4 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 78.7280429016045 0.006263961847259105 1 WT{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6 3 58.408 0 0 4.9061 0 0 397.13035383168386 0 397.13035383168386 0 27.301699579645295 0 0 0 1.805462187404089 0 0.5 0.9947026752325154 + WT{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4.9061 + + 3470 + NaN NaN 214142.5 NaN 14550 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18095 75.53 NaN 874760 35 0 138740 0.262 + 22317 QPINFSVSL 9 65 502.7742891438418 1003.5340253544837 2 502.77435302734375 MULTI HCD FTMS 0 0 0 18090 383078.96875 0.1984839798352314 -4 0.10125732421875 5 Unmodified _QPINFSVSL_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 79.59630418116434 0.005983006570063981 1 SVS{I|L} 4 5 53.175 0 0 5.2988 0 0 599.3058051741133 0 599.3058051741133 0 40.07638152291939 0 0 0 1.274227503252014 0 0.8494850021680094 0 + SVS{I|L} 5.2988 + + 269 NaN NaN 210143.6 NaN 14551 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18096 75.533 NaN 807320 35 0 58275 0.261 + 34694 YPVEDFEASF 10 101 602.2642662827258 1202.5139796322514 2 602.2640380859375 MULTI HCD FTMS 0 0 0 18090 146829.09375 0.5489372873225239 3 -0.091552734375 6 Unmodified _YPVEDFEASF_ ENSG00000075539|ENST00000358350|FRYL 47.748688679222035 0.08597705450879027 1 ECEAS{M(Oxidation (M))|F} 6 5 36.126 0 0 3.0042 0 0 518.2786732404312 0 518.2786732404312 0 16.115553462000562 0 0 0 1.1307196863200843 0 0.3494850021680094 0 ECEAS{M(Oxidation (M))|F} 3.0042 - 3466 NaN NaN 207952.4 NaN 14552 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18097 75.536 NaN 416270 35 0 38978 0.261 + 19444 NPSEFFVDVM 10 82 600.765951518878 1199.5173501045558 2 600.7664794921875 MULTI HCD FTMS 0 0 0 18090 169959.59375 0.8192588162812172 -4 0.10125732421875 7 Oxidation (M) _NPSEFFVDVM(Oxidation (M))_ ENSG00000004975|ENST00000005340|DVL2;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3 57.24910588100465 0.05142613675551719 1 VN{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 7 5 67.172 0 0 5.5999 0 0 361.13167006660314 0 361.13167006660314 0 53.40411276716473 0 0 0 1.8807196863200843 0 0.4247425010840047 0.3807196863200844 VN{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 5.5999 - 641 NaN NaN 145596.8 NaN 14553 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18098 75.54 NaN 352270 35 0 23041 0.261 + -1 YVARCDREDC 10 77 643.7664825937377 1285.5184122542753 2 643.7669677734375 MULTI HCD FTMS 0 0 0 18090 114538.7890625 0.9204531571034781 3 -0.091552734375 8 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 13.90604991867851 0.3810395177745597 1 [YV]AS{M(Oxidation (M))|F}Q 6 -1 49.83 0 0 3.8762 0 0 0 587.1850679986936 587.1850679986936 28.61818737241734 0 0 0 0 1.372363747448347 1.6989700043360187 0.3252574989159953 0 [YV]AS{M(Oxidation (M))|F}Q 3.8762 - 461 + NaN NaN 140037.6 NaN 14554 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18099 75.543 NaN 163890 35 0 45679 0.264 -1 IPMPDFDL 8 45 482.2283576752907 962.4421624173814 2 482.2283020019531 MULTI HCD FTMS 0 0 0 18090 119586.578125 0.7354474953263035 -2 0.05231475830078125 9 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 36.04419817259434 0.28174663821216267 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}EP{I|L} 8 -1 + 49.429 0 0 5.1358 5.1358 90.467 0 0 0 16.839679827251203 11.22486274231747 11.22486274231747 31.34790779899292 0 0.4247425010840047 1.154901959985743 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}EP{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}E{[HG]|PP}D{I|L} 5.1358;1.8787 -;- 66 NaN NaN 104803.4 NaN 14555 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18100 75.546 NaN 239210 35 0 36777 0.261 + 29112 TYGPSFPAF 9 54 493.7344578448239 985.4543627564478 2 493.7346496582031 MULTI HCD FTMS 0 0 0 18090 129586.953125 0.6645055615799172 5 -0.1234588623046875 10 Unmodified _TYGPSFPAF_ ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant 48.345845343767074 0.03388484103555672 1 [YT]G[PS]{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 9 0 + 62.029 0 0 6.2945 6.2945 92.596 0 0 0 25.642492736872597 45.57582781025921 25.642492736872597 34.176127934005436 0 1.8182503180159344 2 0.8494850021680094 0 + + [YT]G[PS]{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};MS[RH][HT]A{M(Oxidation (M))|F} 6.2945;2.8264 +;- + 94 NaN NaN 114328.9 NaN 14556 3542 18090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18102 75.551 NaN 366090 35 0 54235 0.327 + 10159 IFSKIVSLF 9 69 527.3208553400241 1052.627157746848 2 527.3209838867188 MULTI HCD FTMS 0 0 0 18101 166771.640625 0.8036708807479916 4 -0.08730316162109375 1 Unmodified _IFSKIVSLF_ ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B 57.72198328787511 0.020768266150574023 1 VS{I|L}{M(Oxidation (M))|F} 4 5 47.467 0 0 4.5094 0 0 588.3608875959 0 588.3608875959 0 24.508272069161734 0 0 0 1.2302046884880937 0 0.7742275032520141 0 + VS{I|L}{M(Oxidation (M))|F} 4.5094 + + 49 NaN NaN 138707.2 NaN 14557 3543 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18103 75.556 NaN 449150 35 0 63116 0.261 + -1 YLWDCVQLF 9 74 622.2939199023187 1242.5732868714374 2 622.794677734375 MULTI HCD FTMS 0 0 0 18101 118964.6953125 0.5861573237056753 -1 0.03615570068359375 2 Carbamidomethyl (C) _YLWDC(Carbamidomethyl (C))VQLF_ REV__ENSG00000133104|ENST00000438666|SPART;REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF 25.399314129420986 0.14091189997036632 1 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 10 -1 + 80.195 0 0 6.4539 6.4539 89.751 0 0 0 47.759621790487685 12.4595372608497 12.4595372608497 10.026975159433533 0 2.473197507588033 2 0.5796896906561032 0 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YY[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]YD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y[Q{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{M(Oxidation (M))|F};[YN]A[HS][KT]Y{I|L}{M(Oxidation (M))|F};[YN]A[HS][KT]{I|L}Y{M(Oxidation (M))|F} 6.4539;5.647;5.2857;4.8422;3.0976;1.5295;0.82993 -;-;-;-;-;-;- 238 + NaN NaN 147427.6 NaN 14558 3543 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18104 75.559 NaN 443560 35 0 73816 0.264 -1 0 60 431.3049003668874 860.5952478005748 2 431.3052062988281 MULTI HCD FTMS 0 0 0 18101 163958.8125 1 0 0 3 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.81219 0 0 190.13025841023426 554.3574285461245 744.4876869563589 0 0 0 0 0 0 0 0 0 {I|L} 0.81219 - 12 + NaN NaN 145052 NaN 14559 3543 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18105 75.562 NaN 328850 35 0 47283 0.261 + 34674 YPTPSDFGL 9 45 498.7373416581359 995.4601303830718 2 498.73779296875 MULTI HCD FTMS 0 0 0 18101 76441.8046875 0.2656555833564746 -11 0.2908935546875 4 Unmodified _YPTPSDFGL_ ENSG00000188483|ENST00000372491|IER5L 46.020951573049366 0.037705236580089195 1 VD{M(Oxidation (M))|F}[PS]D{M(Oxidation (M))|F}G{I|L} 9 3 + 78.338 0 0 7.8695 7.8695 95.813 0 0 0 57.36880000633434 9.889917747712644 9.889917747712644 44.719712763997556 0 2.1989700043360187 1.6989700043360187 0.3494850021680094 0 VD{M(Oxidation (M))|F}[PS]D{M(Oxidation (M))|F}G{I|L};VD{M(Oxidation (M))|F}[PS][YT][PA] 7.8695;3.3772 -;- 115 + NaN NaN 133031.4 NaN 14560 3543 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18106 75.566 NaN 169420 35 0 8014 0.261 + 17398 LYQPFKQYF 9 65 617.3185974165319 1232.6226418998638 2 619.2669067382812 MULTI HCD FTMS 0 0 0 18101 91232.2421875 1 0 0 5 Unmodified _LYQPFKQYF_ REV__CON__P02663 5.230669730166228 0.3113646817964458 1 YY[DV]{[DS]|[MA]|[CV]|TT}E{I|L}S 9 -1 19.332 0 0 1.5683 0 0 0 158.15386683566376 158.15386683566376 9.87765543582988 0 0 0 0 0 1.6989700043360187 0 0 YY[DV]{[DS]|[MA]|[CV]|TT}E{I|L}S 1.5683 - 102 NaN NaN 114090.8 NaN 14561 3543 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18107 75.569 NaN 466630 35 0 57773 0.262 + 3362 EEPVQLSVL 9 56 507.2793766551525 1012.544200377105 2 507.2793273925781 MULTI HCD FTMS 0 0 0 18101 180295.15625 0.11148283575000617 -6 0.1535797119140625 6 Unmodified _EEPVQLSVL_ REV__ENSG00000160813|ENST00000292330|PPP1R35 29.84058131909904 0.11198220037953927 1 {I|L}SV{I|L} 4 -1 52.423 0 0 5.1773 0 0 582.2655506818375 0 582.2655506818375 0 45.43305028184122 0 0 0 1.4247425010840047 0 0.9247425010840047 0 {I|L}SV{I|L} 5.1773 + + 90 NaN NaN 146729.2 NaN 14562 3543 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18109 75.574 NaN 32660000 35 0 3911800 0.327 + 13411 KYPENFFLL 9 104 585.8132425088911 1169.6119320845821 2 585.8141479492188 MULTI HCD FTMS 0 0 0 18108 41507492 0.2093601494612093 -23 0.593597412109375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 95.618 0 0 8.1752 8.1752 91.725 0 0 0 11.192803136799157 16.478174818886373 11.192803136799157 9.208187539523749 0 2.555462187404089 0 0.2614393726401688 2.061604235276773 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]N[YK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]TE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L} 8.1752;7.3879;7.2182;6.4309;6.1841;6.0772;6.0211;5.2339;4.9098;4.3234 +;-;-;-;-;-;-;-;-;- + 8342 NaN NaN 762462.2 NaN 14563 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18110 75.578 NaN 2605600 35 0 1181300 0.261 + 17280 LYPQFMFHL 9 74 606.2992298592186 1210.583906785237 2 606.2998046875 MULTI HCD FTMS 0 0 0 18108 1730819.25 0.10812147338669008 20 -0.33956146240234375 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 1 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 87.283 0 0 7.21 7.21 92.694 0 0 0 56.88908619073706 5.999161495794425 5.999161495794425 16.342867450328157 0 2.2346368802282015 2 0 0.7134679910804405 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]{[CA]|SS}[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{[RE]|[WV]}[HS]{I|L}TAN;[QP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[Y{I|L}]{M(Oxidation (M))|F}H{I|L} 7.21;5.86;4.8747;2.6088;2.5099;0.73118;0.23389 +;-;+;-;-;-;- + 620 + NaN NaN 489026 NaN 14564 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18111 75.582 NaN 1030200 35 0 172040 0.261 + 28502 TPQFPDMIL 9 82 539.2679517160655 1076.5213504989308 2 539.2682495117188 MULTI HCD FTMS 0 0 0 18108 683481.75 0.0365634270159531 -32 0.841033935546875 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 63.960520009940105 0.0120409805053046 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 67.295 0 0 6.2512 6.2512 93.615 0 0 0 8.569233304795034 48.31576122642437 8.569233304795034 67.29516131314475 0 1.8252574989159953 0 0.9194451763165201 0.3807196863200844 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 6.2512 - 378 NaN NaN 237872.4 NaN 14565 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18112 75.585 NaN 707100 35 0 116900 0.262 + 18372 MPMNVADLI 9 62 510.2483975056234 1018.4822420780469 2 510.2486877441406 MULTI HCD FTMS 0 0 0 18108 673845.3125 1 0 0 4 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 47.748688679222035 0.03472022231463587 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L} 9 4 + 67.399 0 0 6.6176 6.6176 93.602 0 0 0 12.79840696594043 43.93130718590854 12.79840696594043 42.70303756120384 0 1.5 1.154901959985743 0.3252574989159953 0.3494850021680094 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[YC]|[HE]}[{M(Oxidation (M))|F}T]{I|L}{I|L} 6.6176;2.4248 -;- 130 NaN NaN 182963.2 NaN 14566 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18113 75.588 NaN 537120 35 0 76992 0.261 + 35599 YYIFIPSKF 9 60 589.3177057965413 NaN 0 589.3175659179688 PEAK HCD FTMS 0 0 0 18108 425229.40625 0.7320249528878675 -4 0.11122894287109375 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 38.175570920033316 0.08412639609110066 1 PY{I|L} 3 7 18.729 0 0 1.5917 0 0 380.20925084913875 420.1933992975219 800.4026501466607 0 0 0 0 0 0.8807196863200843 0 0 0 PY{I|L} 1.5917 - 74 + NaN NaN 160490.2 NaN 14567 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18114 75.592 NaN 612770 35 0 121810 0.261 + 4511 EYKIAFPYL 9 77 572.3080926403767 1142.6016323475533 2 572.3078002929688 MULTI HCD FTMS 0 0 0 18108 249322.296875 0.08417270805603923 13 -0.2539825439453125 6 Unmodified _EYKIAFPYL_ ENSG00000174231|ENST00000304992|PRPF8 71.92227651296345 0.008466197542043549 1 TS{I|L}A{M(Oxidation (M))|F}PY{I|L} 8 3 51.011 0 0 4.4644 0 0 232.12088210273595 0 232.12088210273595 0 24.790557544968618 0 0 0 2.0356668758921828 0 1.8494850021680094 0 TS{I|L}A{M(Oxidation (M))|F}PY{I|L} 4.4644 - 1385 NaN NaN 171853.1 NaN 14568 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18115 75.595 NaN 463410 35 0 94882 0.261 + 8312 GYAHWIGLF 9 69 532.2716752795135 1062.5287976258269 2 532.2715454101562 MULTI HCD FTMS 0 0 0 18108 214214 0.054001295618674935 20 -0.33956146240234375 7 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 93.76273176245871 0.004427368897683185 1 [YG]AHW{I|L}G{I|L}{M(Oxidation (M))|F} 9 0 + 68.527 0 0 6.4495 6.4495 93.592 0 0 0 34.23824890523761 10.52432802706015 10.52432802706015 51.63811573052314 0 2.4247425010840047 1.2218487496163564 0 0 + + [YG]AHW{I|L}G{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[MS]|[{M(Oxidation (M))|F}A]}WV[HS]{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[MS]|[{M(Oxidation (M))|F}A]}VW[HS]{M(Oxidation (M))|F} 6.4495;1.5895;1.1405 +;-;- + 864 + NaN NaN 155500.8 NaN 14569 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18116 75.598 NaN 756020 35 0 60720 0.261 + 17187 LYMNPYAESE 10 97 608.7633743183553 1215.5121957035105 2 608.7639770507812 MULTI HCD FTMS 0 0 0 18108 170383.84375 0.3221114360284563 7 -0.15180206298828125 8 Unmodified _LYMNPYAESE_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 7.289230182591677 0.43672065049472153 1 ME{I|L}Y{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 7 30.672 0 0 2.5234 0 0 131.93227567919695 0 131.93227567919695 0 6.490794246723937 0 0 0 0 0 0 1.110924374808178 ME{I|L}Y{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.5234 - 2271 + NaN NaN 201350.9 NaN 14570 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18117 75.602 NaN 433880 35 0 48356 0.264 + -1 KGCEECQFPK 10 66 409.1834778704338 NaN 0 409.18365478515625 PEAK HCD FTMS 0 0 0 18108 26884.49609375 0.4759100656835081 1 -0.0326385498046875 9 Carbamidomethyl (C) _KGCEEC(Carbamidomethyl (C))QFPK_ REV__ENSG00000197134|ENST00000594947|ZNF257;REV__ENSG00000267680|ENST00000693561|ZNF224;REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF;REV__nc|ENSG00000197134|Q9Y2Q1-2|ZNF257;REV__nc|ENSG00000197134|Q9Y2Q1-3|ZNF257;REV__nc|ENSG00000197134|Q9Y2Q1-4|ZNF257 2.6312355333042263 0.33793231609310104 1 M 1 -1 3.9794 0 0 0.48746 0 0 566.2340994402833 116.05036340884999 682.2844628491333 0 0 0 0 0 0 0 0 0 M 0.48746 - 2 + NaN NaN 149597.5 NaN 14571 3544 18108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18119 75.606 NaN 1725500 35 0 261890 0.327 + 26072 SPFRFEISF 9 107 565.2877672566918 1128.5609815801836 2 565.2881469726562 MULTI HCD FTMS 0 0 0 18118 1409498.125 0.9645806968292148 -1 0.0326385498046875 1 Unmodified _SPFRFEISF_ ENSG00000105011|ENST00000263382|ASF1B 78.06048673739656 0.006479972202176041 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F} 9 2 + 81.193 0 0 7.1944 7.1944 88.299 0 0 0 17.125299705980197 56.131674952134105 17.125299705980197 6.773174902439578 0 2.1989700043360187 1.5228787452803376 0.6861818737241735 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PRS{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PRSE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}[WK]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}SE{I|L}{M(Oxidation (M))|F} 7.1944;6.5943;6.0416;5.5763;5.4414;4.8868;4.7722;4.5362;4.4908;4.4235 -;-;-;-;-;-;-;-;-;- 2689 NaN NaN 340972.7 NaN 14572 3545 18118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18120 75.611 NaN 289240 35 0 48521 0.261 + -1 AWIQPFRPCL 10 77 644.3395738915833 1286.6645948499665 2 644.8407592773438 MULTI HCD FTMS 0 0 0 18118 117433.390625 0.6832651544305105 -3 0.091552734375 2 Carbamidomethyl (C) _AWIQPFRPC(Carbamidomethyl (C))L_ REV__ENST00000371410.4_2_X:119077536-119077716:-|nuORF 10.823927491677226 0.4098686510432541 1 [YV]{[WN]|[YH]}VG{M(Oxidation (M))|F}{I|L}K 9 -1 28.783 0 0 2.237 0 0 0 177.05003115333275 177.05003115333275 8.377137607731203 0 0 0 0 0 2 0 0.4247425010840047 [YV]{[WN]|[YH]}VG{M(Oxidation (M))|F}{I|L}K 2.237 - 459 NaN NaN 125979.2 NaN 14573 3545 18118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18121 75.614 NaN 305250 35 0 84456 0.261 -1 DYMYLRQLF 9 51 632.80517578125 NaN 0 632.80517578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _DYM(Oxidation (M))YLRQLF_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 24.990960013464015 0.1538978316896649 1 {I|L}QR 3 -1 18.94 0 0 1.4989 0 0 165.07837972986505 698.2538546197874 863.3322343496525 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}QR 1.4989 - 31 + NaN NaN 130703.3 NaN 14574 3545 18118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18123 75.619 NaN 2146800 35 0 300320 0.327 + 1215 AYLLYSLHL 9 75 546.8081024309009 1091.6016519286018 2 546.8081665039062 MULTI HCD FTMS 0 0 0 18122 1399348.25 0.23909372200286072 7 -0.1517486572265625 1 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 161.8943921545576 8.236690082142223E-09 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 104.43 0 0 9.5671 9.5671 89.798 0 0 0 2.5970469684341424 2.5970469684341424 2.5970469684341424 2.5970469684341424 0 2.7302046884880937 1.6989700043360187 1.1549471895720984 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};AY{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}S{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YSH{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}SH{I|L}{I|L};{I|L}{I|L}YAYS{I|L}H{I|L};[Y{I|L}]A{I|L}YS{I|L}H{I|L};[Y{I|L}]AY{I|L}S{I|L}H{I|L};AY{I|L}{I|L}Y{[HG]|PP}[KQ];[Y{I|L}]{I|L}AYS{I|L}H{I|L} 9.5671;9.3292;8.5575;8.3922;7.3826;6.7995;6.7254;5.7158;5.6695;5.627 +;+;-;-;-;-;-;-;-;- + 764 NaN NaN 408164.9 NaN 14575 3546 18122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18124 75.623 NaN 626510 35 0 70200 0.261 + 29013 TYEKFFGLL 9 91 559.3001454744164 1116.5857380156326 2 559.8017578125 MULTI HCD FTMS 0 0 0 18122 120539.8984375 0.28371019755022014 -5 0.12371826171875 2 Unmodified _TYEKFFGLL_ ENSG00000163510|ENST00000410053|CWC22 83.42873516780209 0.004742894019233849 1 [YT]EK{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L} 9 0 + 84.624 0 0 7.5789 7.5789 85.915 0 0 0 2.5874185669681538 0.11439372640168699 0.11439372640168699 0.11439372640168699 0 2.4604093769761874 2 0.6989700043360187 0 + + [YT]EK{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L};[YT]EK{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F};TYEK{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F};TYEK{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L};[YT]EKV{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[YT]EK{M(Oxidation (M))|F}V{[MS]|[{M(Oxidation (M))|F}A]}{I|L};[YT]EKV{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}{I|L};TY[VG]T{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F};TY[VG]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L};T[VG]YT{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F} 7.5789;7.5686;7.3471;7.2304;7.0305;6.2732;5.7351;5.3852;5.2685;4.5011 +;-;-;+;-;-;-;-;-;- + 1449 NaN NaN 174230.2 NaN 14576 3546 18122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18125 75.627 NaN 509840 35 0 97506 0.261 + 20034 NYIHRPDVYA 10 79 624.3144116943156 NaN 0 624.3141479492188 PEAK HCD FTMS 0 0 0 18122 118142.9296875 0.29933070548190865 -3 0.068023681640625 3 Unmodified _NYIHRPDVYA_ tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1 34.40172386719151 0.16785494504845722 1 {I|L} 1 9 16.99 0 0 1.3629 0 0 856.4240919861585 274.0831698053344 1130.507261791493 0 0 0 0 0 1 0 0 0 + {I|L} 1.3629 + + 95 + NaN NaN 176881.9 NaN 14577 3546 18122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18126 75.63 NaN 384640 35 0 32282 0.261 + 26813 SYIEHIFEI 9 86 575.7920384064217 1149.5695238796434 2 575.7929077148438 MULTI HCD FTMS 0 0 0 18122 45261.0703125 0.0007285113127196226 84 -1.6785736083984375 4 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 58.678817012210395 0.019429721296335044 1 [YT]VH{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L} 9 4 + 47.016 0 0 4.0899 4.0899 81.649 0 0 0 3.5340874929963917 12.152894820651156 3.5340874929963917 3.5340874929963917 0 0.9634679910804405 1 0 0.4247425010840047 [YT]VH{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}H{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};[YT]VH[{M(Oxidation (M))|F}E]{I|L}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}H[{M(Oxidation (M))|F}E]{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[WE][KG]{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[SG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[NS][KG]{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[SG]G[KG]{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[SG][{M(Oxidation (M))|F}E]{I|L}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}C[{I|L}T]T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 4.0899;3.7824;3.3605;3.0531;2.1069;1.4852;1.4163;1.3803;1.1253;0.90562 -;-;-;-;-;-;-;-;-;- 1471 NaN NaN 142728.4 NaN 14578 3546 18122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18127 75.634 NaN 306790 35 0 54566 0.261 -1 TWIRRWPCL 9 71 644.3406982421875 NaN 0 644.3406982421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _TWIRRWPC(Carbamidomethyl (C))L_ ENST00000437653.1_1_3:175695464-175695797:-|nuORF 7.289230182591677 0.2599242500475609 1 {M(Oxidation (M))|F}S 2 -1 14.222 0 0 1.1053 0 0 212.1529115257145 837.3915990240523 1049.5445105497668 0 0 0 0 0 0 0 0.3252574989159953 0 {M(Oxidation (M))|F}S 1.1053 - 27 + NaN NaN 136743.1 NaN 14579 3546 18122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18129 75.638 NaN 774640 35 0 139220 0.327 + 15597 LPDYTSPVVL 10 76 552.302694137512 1102.590835341824 2 552.3031005859375 MULTI HCD FTMS 0 0 0 18128 613445.75 0.958777891611788 2 -0.04524993896484375 1 Unmodified _LPDYTSPVVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 41.8396318013385 0.12944265636084 1 QSTEEV{I|L} 7 7 53.064 0 0 4.8127 0 0 298.21684462715 0 298.21684462715 0 43.60038831858624 0 0 0 1.8807196863200843 0 0.7302046884880937 0 QSTEEV{I|L} 4.8127 - 228 NaN NaN 206160.1 NaN 14580 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18130 75.643 NaN 1094900 35 0 109240 0.261 + -1 LCMTTYTNNF 10 103 612.2557491292488 NaN 0 612.2694702148438 PEAK HCD FTMS 0 0 0 18128 66058.4375 1 0 0 2 Oxidation (M) _LCM(Oxidation (M))TTYTNNF_ REV__tr|U7SNA5|U7SNA5_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01768PE=3SV=1 21.536976647645854 0.26818477760186155 1 N{I|L}E 3 -1 23.276 0 0 1.904 0 0 279.12153136220996 584.1664891132573 863.2880204754672 0 0 0 0 0 1.2614393726401687 0 0.3494850021680094 0 N{I|L}E 1.904 - 607 + NaN NaN 249552.7 NaN 14581 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18131 75.646 NaN 884450 35 0 109730 0.261 -1 SSMDLRSFLL 10 107 592.8025974236541 1183.5906419141081 2 592.8023071289062 MULTI HCD FTMS 0 0 0 18128 1152877.125 0.5050773238387952 -31 0.8022232055664062 3 Oxidation (M) _SSM(Oxidation (M))DLRSFLL_ chr4:70523168-70523868|111|30.48|0.04|9.68|+|1|None,AMTN|1 29.081581746732265 0.240155558137004 1 DHN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 52.924 0 0 4.4715 0 0 279.15806777168126 0 279.15806777168126 0 31.061310849071706 0 0 0 1.5682503180159344 0 0.5228787452803376 0.6307196863200843 DHN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.4715 - 1143 NaN NaN 219688.8 NaN 14582 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18132 75.65 NaN 250990 35 0 26862 0.261 + 21537 PYLFHVVTF 9 66 561.8029047975507 1121.5912566619013 2 561.8030395507812 MULTI HCD FTMS 0 0 0 18128 144785.921875 0.044479220147850954 39 -0.5183639526367188 4 Unmodified _PYLFHVVTF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 70.71552829651908 0.008856681705782516 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}VVT{M(Oxidation (M))|F} 9 0 + 75.824 0 0 6.7604 6.7604 91.369 0 0 0 13.789850105233299 16.478174818886373 13.789850105233299 13.789850105233299 0 2.3494850021680094 1.6989700043360187 0.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}VVT{M(Oxidation (M))|F};[Y{I|L}]P{[{M(Oxidation (M))|F}H]|[RQ]}VVT{M(Oxidation (M))|F} 6.7604;5.5309 +;- + 164 NaN NaN 118139.1 NaN 14583 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18133 75.653 NaN 475140 35 0 43350 0.261 + 26460 STSENMFLE 9 79 529.2298951354387 1056.4452373376773 2 529.2301635742188 MULTI HCD FTMS 0 0 0 18128 62485.25390625 0.3487150567183733 2 -0.04524993896484375 5 Unmodified _STSENMFLE_ ENSG00000119912|ENST00000265986|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;nc|ENSG00000119912|P14735-2|IDE 10.073929032068715 0.27331982688540024 1 SN 2 7 18.94 0 0 1.7928 0 0 0 852.3222807509835 852.3222807509835 9.64333124107817 0 0 0 0 0 0 0 0.2742275032520141 SN 1.7928 - 173 + NaN NaN 148772.7 NaN 14584 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18134 75.656 NaN 227250 35 0 22422 0.262 -1 0 72 435.250960108541 868.487367283882 2 435.2510681152344 MULTI HCD FTMS 0 0 0 18128 247384.46875 0.5957000321166046 64 -1.186553955078125 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.4363 0 0 703.4082484868102 0 703.4082484868102 0 1.5051499783199063 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4363 - 11 + NaN NaN 114446.9 NaN 14585 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18135 75.66 NaN 438090 35 0 99804 0.261 + -1 YLEGPVEGHVC 11 71 630.2901757665772 1258.5657985999544 2 630.2907104492188 MULTI HCD FTMS 0 0 0 18128 363405.46875 0.9641648129247612 -2 0.0319061279296875 7 Carbamidomethyl (C) _YLEGPVEGHVC(Carbamidomethyl (C))_ REV__ENST00000366541.7_1_1:243419456-243433497:+|nuORF;REV__ENST00000490065.5_1_1:243419456-243433436:+|nuORF 13.90604991867851 0.33591854289260503 1 {I|L}YYDPA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H{M(Oxidation (M))|F} 10 -1 + 73.875 0 0 5.8698 5.8698 88.45 0 0 0 50.9163750790475 2.689549981487076 2.689549981487076 9.20941280735775 0 2.024227503252014 2 0.4247425010840047 0 {I|L}YYDPA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H{M(Oxidation (M))|F};{I|L}YYD[{I|L}A]{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YYD{[QN]|[E{I|L}]|[KN]}[KG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YY[WP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[QD]|[EN]|[WG]|[KD]|[RS]}[W{I|L}]HH{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[Y{M(Oxidation (M))|F}][HQ]HH{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}E][W{I|L}]HH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[PS][HV]DHH{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HS][HV]DHH{M(Oxidation (M))|F} 5.8698;5.1381;4.4215;3.0512;2.812;2.0388;1.9951;1.9759;1.8234;1.8234 -;-;-;-;-;-;-;-;-;- 373 + NaN NaN 150487.4 NaN 14586 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18136 75.663 NaN 430820 35 0 56574 0.261 + 34922 YSLELFHSR 9 90 576.2948350118435 NaN 0 576.29296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YSLELFHSR_ ENST00000521687.5_1_7:27162261-27168026:+|nuORF 10.073929032068715 0.24642998803896465 1 E{M(Oxidation (M))|F}{I|L} 3 7 13.43 0 0 1.1672 0 0 132.0955381487832 626.2592257135374 758.3547638623206 0 0 0 0 0 0 0 0.3252574989159953 0 E{M(Oxidation (M))|F}{I|L} 1.1672 - 349 + NaN NaN 145109.5 NaN 14587 3547 18128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18138 75.668 NaN 1075500 35 0 101680 0.327 + 27137 SYMWTINNF 9 103 596.2603752814659 1190.5061976297318 2 596.2603759765625 MULTI HCD FTMS 0 0 0 18137 471246.6875 0.491108912178297 3 -0.05802154541015625 1 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 125.52916310638031 0.0008761121089336018 1 GN{I|L}TWEC{M(Oxidation (M))|F} 8 7 69.761 0 0 5.8598 0 0 222.10045058418126 0 222.10045058418126 0 43.65556390528731 0 0 0 1.8494850021680094 0 0.4247425010840047 0.7614393726401688 GN{I|L}TWEC{M(Oxidation (M))|F} 5.8598 - 4701 NaN NaN 251569.4 NaN 14588 3548 18137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18139 75.672 NaN 537090 35 0 37662 0.262 + 19712 NYAHTVEPGEL 11 84 615.293957836836 1228.5733627404718 2 615.294677734375 MULTI HCD FTMS 0 0 0 18137 76849.2734375 0.25713097691142334 1 -0.01601409912109375 2 Unmodified _NYAHTVEPGEL_ REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF;REV__ENST00000532739.1_1_16:16458768-16459152:+|nuORF;REV__nc|ENSG00000008710|P98161-2|PKD1;REV__nc|ENSG00000008710|P98161-3|PKD1 7.477065608646677 0.3861287967437539 1 [YN]A 3 -1 35.062 0 0 2.8539 0 0 0 877.4070473954088 877.4070473954088 -0.050631631319859594 0 -0.050631631319859594 0 0 0 1.6989700043360187 0 0.7614393726401688 [YN]A 2.8539 + + 317 NaN NaN 174709.4 NaN 14589 3548 18137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18140 75.675 NaN 547120 35 0 181260 0.264 -1 CGRGAPHA 8 56 413.1932919154025 824.372030897605 2 413.1934509277344 MULTI HCD FTMS 0 0 0 18137 435453.75 0.6573933040097986 -18 0.45951080322265625 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 1 R 1 -1 4.6041 0 0 0.5585 0 0 173.10530378462664 492.15741907291255 665.2627228575392 0 0 0 0 0 0 0 0 0 R 0.5585 + + 2 + NaN NaN 171570.3 NaN 14590 3548 18137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18141 75.679 NaN 377750 35 0 29347 0.261 + 25586 SFTTQCEEL 9 79 529.2298951354387 1056.4452373376773 2 528.8079833984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SFTTQCEEL_ REV__ENSG00000242120|ENST00000567252|MDFIC2;REV__nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 -1 7.9588 0 0 0.75336 0 0 184.97759925349607 642.2760714166624 827.2536706701585 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.75336 - 212 + NaN NaN 149895.3 NaN 14591 3548 18137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18143 75.684 NaN 1634500 35 0 288100 0.327 + 22318 QPINFSVSL 9 74 502.7742891438418 1003.5340253544837 2 502.7743835449219 MULTI HCD FTMS 0 0 0 18142 1341034.375 0.6948275983784403 3 -0.0745849609375 1 Unmodified _QPINFSVSL_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 110.6747026088012 0.0028322563155251486 1 N{M(Oxidation (M))|F}SVS{I|L} 6 3 75.41 0 0 7.5144 0 0 338.19441420722814 0 338.19441420722814 0 64.37904046466664 0 0 0 2.110924374808178 0 1.1237125054200234 0.9698565171985376 + N{M(Oxidation (M))|F}SVS{I|L} 7.5144 + + 350 NaN NaN 327427.8 NaN 14592 3549 18142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18144 75.688 NaN 698050 35 0 41509 0.261 -1 MNSTLTFFLL 10 104 601.8082769108884 NaN 0 601.8082275390625 PEAK HCD FTMS 0 0 0 18142 358965.84375 0.3473840382047512 -8 0.1882476806640625 2 Oxidation (M) _M(Oxidation (M))NSTLTFFLL_ ENST00000392455.7_2_3:191109610-191109739:+|nuORF 20.41453444215458 0.2772770459383961 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}NAVD 7 -1 41.147 0 0 3.4243 0 0 131.09443096183946 261.0891207330688 392.18355169490826 0 0 0 0 0 1.5629529932484498 0 0.5796896906561032 0.25 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}NAVD 3.4243 - 636 + NaN NaN 200804.2 NaN 14593 3549 18142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18145 75.691 NaN 1432600 35 0 233910 0.264 + -1 LMEKYSFQF 9 77 403.52675555522757 1207.5584372658827 3 403.5264587402344 MULTI HCD FTMS 0 0 0 18142 401350.71875 0.1871136868043711 -5 0.10979461669921875 3 Oxidation (M) _LM(Oxidation (M))EKYSFQF_ REV__ENSG00000171495|ENST00000399564|MROH2B;REV__nc|ENSG00000171495|Q7Z745-2|MROH2B 8.97624648632007 0.2828035605319045 1 KY{I|L} 3 -1 30.445 0 0 2.5212 0 0 0 800.2948321486901 800.2948321486901 3.552659518797938 0 0 0 0 0.4247425010840047 0 0 0 KY{I|L} 2.5212 - 309 + NaN NaN 304036.7 NaN 14594 3549 18142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18146 75.695 NaN 495430 35 0 59687 0.261 + 3578 EKEMNSELS 9 80 533.738498878942 1065.4624448246839 2 533.735107421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _EKEMNSELS_ ENSG00000230031|ENST00000454856|POTEB2;ENSG00000233917|ENST00000439682|POTEB 13.042465956692817 0.2476723265019929 1 CV[PS][C(Carbamidomethyl (C))S]G{I|L}P{M(Oxidation (M))|F} 10 8 + 29.914 0 0 2.8076 2.8076 79.203 0 0 0 0.5799194697768684 5.74153794511119 0.5799194697768684 0.5799194697768684 0 0.5 0 0 0 CV[PS][C(Carbamidomethyl (C))S]G{I|L}P{M(Oxidation (M))|F};SA{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))S]G{I|L}P{M(Oxidation (M))|F};E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[C(Carbamidomethyl (C))S]G{I|L}P{M(Oxidation (M))|F};CV[PS]M{[QC]|[C(Carbamidomethyl (C))A]}V{[TV]|[{I|L}S]};SA{NN|[MP]|[D{I|L}]|[EV]}M{[QC]|[C(Carbamidomethyl (C))A]}V{[TV]|[{I|L}S]};CV[PS]M[SG]W{[TV]|[{I|L}S]};E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}M{[QC]|[C(Carbamidomethyl (C))A]}V{[TV]|[{I|L}S]};SA{NN|[MP]|[D{I|L}]|[EV]}M[SG]W{[TV]|[{I|L}S]};SD[PS][C(Carbamidomethyl (C))S]G{I|L}P{M(Oxidation (M))|F};C{[C(Carbamidomethyl (C))E]|[WC]}[Q{I|L}]G{I|L}P{M(Oxidation (M))|F} 2.8076;2.7532;2.5399;2.2687;2.2143;2.0353;2.001;1.9809;1.96;1.8624 -;-;-;-;-;-;-;-;-;- 434 + NaN NaN 158794.8 NaN 14595 3549 18142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18147 75.698 NaN 374150 35 0 129040 0.261 -1 DYMYLRQLF 9 56 632.8052368164062 NaN 0 632.8052368164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _DYM(Oxidation (M))YLRQLF_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 16.149105407346934 0.21324626030841579 1 {I|L}Q{[QD]|[EN]|[WG]|[KD]|[RS]}D 5 -1 13.456 0 0 1.0657 0 0 164.0782520740193 496.21748346124957 660.2957355352689 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}Q{[QD]|[EN]|[WG]|[KD]|[RS]}D 1.0657 - 21 + NaN NaN 138588.3 NaN 14596 3549 18142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18149 75.703 NaN 79661000 35 0 9565800 0.327 + 13412 KYPENFFLL 9 93 585.8132425088911 1169.6119320845821 2 585.81396484375 MULTI HCD FTMS 0 0 0 18148 95281712 0.4805925991683597 -17 0.423309326171875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 140.63315402491853 1.8728231636916273E-05 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 99.705 0 0 8.5246 8.5246 91.066 0 0 0 8.182503180159344 16.478174818886373 8.182503180159344 8.182503180159344 0 2.579689690656103 0 0.5189301784845296 2.012530573990781 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KYPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.5246;7.825;7.7374;7.0378;6.8329;6.7672;6.726;6.0677;6.0433;5.998 +;-;-;-;-;-;-;-;-;+ + 7715 NaN NaN 563333.9 NaN 14597 3550 18148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18150 75.707 NaN 1300600 35 0 184380 0.261 + 21910 QDPELLSVI 9 73 507.2793766551525 1012.544200377105 2 507.2793884277344 MULTI HCD FTMS 0 0 0 18148 1218700.75 0.7535655331320601 1 -0.0226898193359375 2 Unmodified _QDPELLSVI_ ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1 29.84058131909904 0.11198220037953927 1 {I|L}SV{I|L} 4 5 53.175 0 0 5.2517 0 0 582.265330206246 0 582.265330206246 0 39.4347933777739 0 0 0 1.5 0 0.9247425010840047 0 + {I|L}SV{I|L} 5.2517 + + 133 NaN NaN 282395.9 NaN 14598 3550 18148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18151 75.711 NaN 1266800 35 0 208450 0.261 -1 VDLACQNFIL 10 103 596.804410458233 1191.5942679832658 2 596.8054809570312 MULTI HCD FTMS 0 0 0 18148 650348.25 0.43309807889834895 -4 0.0838470458984375 3 Carbamidomethyl (C) _VDLAC(Carbamidomethyl (C))QNFIL_ ENSG00000164953|ENST00000453321|TMEM67 26.268140514670165 0.2654086933305545 1 NNMC(Carbamidomethyl (C)){I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 8 -1 44.479 0 0 3.7327 0 0 166.17335933732699 0 166.17335933732699 0 3.596981436199016 0 0 0 0 0 1.3737125054200234 1.055462187404089 NNMC(Carbamidomethyl (C)){I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3.7327 - 4414 + NaN NaN 278701.7 NaN 14599 3550 18148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18152 75.714 NaN 795160 35 0 68419 0.261 + 6264 FPFERLYDL 9 91 600.3083636196803 1198.6021743061606 2 600.3084716796875 MULTI HCD FTMS 0 0 0 18148 406683 0.4041908350965761 -4 0.0838470458984375 4 Unmodified _FPFERLYDL_ ENSG00000144028|ENST00000323853|SNRNP200 61.08992128646608 0.016056751534446034 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YVE 9 2 + 72.878 0 0 6.0803 6.0803 86.147 0 0 0 3.4267039730188174 37.191577158623026 3.4267039730188174 6.505149978319906 0 2.1861818737241734 1.6989700043360187 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YD{I|L};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}ER{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}EY[R{I|L}]VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}{M(Oxidation (M))|F}{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}EY[R{I|L}]D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}{M(Oxidation (M))|F}{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}{I|L}{M(Oxidation (M))|F}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}{I|L}{M(Oxidation (M))|F}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}{I|L}Y{M(Oxidation (M))|F}VE 6.0803;5.5375;5.349;4.3686;4.2834;3.8258;3.7407;3.6342;3.0915;2.9846 -;+;+;-;-;-;-;-;-;- + 2238 NaN NaN 211284.6 NaN 14600 3550 18148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18153 75.718 NaN 347430 35 0 51302 0.262 + 34675 YPTPSDFGL 9 55 498.7373416581359 995.4601303830718 2 498.73773193359375 MULTI HCD FTMS 0 0 0 18148 267025.75 0.9279854351613701 -4 0.0838470458984375 5 Unmodified _YPTPSDFGL_ ENSG00000188483|ENST00000372491|IER5L 54.773552608820026 0.024892918755467567 1 VD{M(Oxidation (M))|F}[PS]D{M(Oxidation (M))|F}G{I|L} 9 3 + 57.145 0 0 5.7406 5.7406 92.596 0 0 0 31.911677396591145 4.212046717774527 4.212046717774527 57.145096999615745 0 2.3494850021680094 0 0.3807196863200844 0 VD{M(Oxidation (M))|F}[PS]D{M(Oxidation (M))|F}G{I|L} 5.7406 - 62 + NaN NaN 126544.2 NaN 14601 3550 18148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18154 75.721 NaN 507350 35 0 72547 0.261 + 12050 KINADRYTGN 10 86 576.2948350118435 NaN 0 576.294921875 PEAK HCD FTMS 0 0 0 18148 186457.265625 0.8326232737213519 1 -0.0226898193359375 6 Unmodified _KINADRYTGN_ REV__ENSG00000112531|ENST00000361752|QKI;REV__nc|ENSG00000112531|Q96PU8-3|QKI;REV__nc|ENSG00000112531|Q96PU8-5|QKI;REV__nc|ENSG00000112531|Q96PU8-6|QKI;REV__nc|ENSG00000112531|Q96PU8-8|QKI;REV__nc|ENSG00000112531|Q96PU8-9|QKI 8.745405648335112 0.33269943387702366 1 E{M(Oxidation (M))|F}{I|L} 3 -1 10.177 0 0 0.88454 0 0 132.096158765525 626.2599662950344 758.3561250605594 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}{I|L} 0.88454 - 224 + NaN NaN 164353.9 NaN 14602 3550 18148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18156 75.726 NaN 2891200 35 0 503590 0.327 + 28503 TPQFPDMIL 9 98 539.2679517160655 1076.5213504989308 2 539.2681274414062 MULTI HCD FTMS 0 0 0 18155 2773319.5 0.14836104274937778 -25 0.62158203125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 70.33199760932243 0.0089807860198535 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 75.446 0 0 7.0083 7.0083 85.934 0 0 0 2.2184874961635614 16.478174818886373 2.2184874961635614 2.2184874961635614 0 1.8252574989159953 0 1.0629529932484498 0.3252574989159953 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[YV][NP]PD{M(Oxidation (M))|F}{I|L}{I|L} 7.0083;6.8022;6.1006;5.6574;5.6447;4.6974 -;+;-;-;-;- + 1685 NaN NaN 543272.5 NaN 14603 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18157 75.73 NaN 2064200 35 0 929750 0.261 + 17281 LYPQFMFHL 9 77 606.2992298592186 1210.583906785237 2 606.2997436523438 MULTI HCD FTMS 0 0 0 18155 1206405.5 0.07536219634823597 27 -0.32038116455078125 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 77.98433622928108 0.006504613272346738 1 [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}] 9 0 + 71.686 0 0 5.9216 5.9216 90.398 0 0 0 62.733871898888154 3.65279269351241 3.65279269351241 16.510234424404686 0 1.9489700043360187 2 0 0.7302046884880937 + + [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]{[CA]|SS}{[QN]|[E{I|L}]|[KN]}QP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 5.9216;4.5578;1.7845;1.165 +;-;-;- + 301 + NaN NaN 398814.8 NaN 14604 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18158 75.733 NaN 909480 35 0 64852 0.262 + 18965 NAILYETVL 9 103 518.2895842443843 1034.5646155555685 2 518.2891845703125 MULTI HCD FTMS 0 0 0 18155 308895.78125 0.5642845497136408 2 -0.0452117919921875 3 Unmodified _NAILYETVL_ ENSG00000166747|ENST00000299980|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF;ENST00000565642.5_1_16:71777395-71799448:-|nuORF;nc|ENSG00000166747|O43747-2|AP1G1 57.72198328787511 0.020768266150574023 1 {[QG]|[NA]}{I|L}{I|L}YETV{I|L} 9 0 + 51.756 0 0 5.0027 5.0027 88.891 0 0 0 7.453747079086 33.555812961369796 7.453747079086 16.74742501084004 0 2.265871564380277 0 0.4247425010840047 0.48965182871044377 + + {[QG]|[NA]}{I|L}{I|L}YETV{I|L};{[QG]|[NA]}{I|L}{I|L}EYTV{I|L};{[TV]|[{I|L}S]}{[DS]|[MA]|[CV]|TT}[Y{I|L}]PK{I|L};[EP]QQ[RH]K{I|L};{[QG]|[NA]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[MS]|[{M(Oxidation (M))|F}A]}K{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[RE]|[WV]}PK{I|L} 5.0027;3.3839;2.3081;0.5722;0.23694;0.21839 +;-;-;-;-;- + 1240 NaN NaN 220882.4 NaN 14605 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18159 75.737 NaN 603340 35 0 71358 0.261 + 35600 YYIFIPSKF 9 67 589.3177057965413 NaN 0 589.317626953125 PEAK HCD FTMS 0 0 0 18155 412992.71875 0.7109597103175436 3 -0.06781005859375 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 63.960520009940105 0.017943332055813988 1 KSP{M(Oxidation (M))|F}{I|L}{I|L} 6 7 32.146 0 0 2.732 0 0 165.0732166023684 323.1035506865503 488.1767672889187 0 0 0 0 0 2.024227503252014 0 0 0 KSP{M(Oxidation (M))|F}{I|L}{I|L} 2.732 - 227 + NaN NaN 176196.6 NaN 14606 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18160 75.74 NaN 532240 35 0 68795 0.261 -1 MPMNVADLI 9 67 510.2483975056234 1018.4822420780469 2 510.24835205078125 MULTI HCD FTMS 0 0 0 18155 351580.8125 0.5217529987640895 7 -0.121246337890625 5 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 36.12702656103203 0.08312389501731911 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L} 9 -1 + 70.596 0 0 6.9315 6.9315 94.119 0 0 0 19.621892823592972 45.2950000835532 19.621892823592972 41.665543185820226 0 1.4247425010840047 1.3979400086720375 0 0.3494850021680094 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L};{[TV]|[{I|L}S]}DD{[SA]|[TG]}AD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[DC]{[QS]|[NT]}{I|L}{I|L};{[TV]|[{I|L}S]}DD[QT]D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[DC]P[KC]{I|L} 6.9315;2.8405;2.3984;2.0514;1.6119 -;-;-;-;- 317 NaN NaN 160258.3 NaN 14607 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18161 75.743 NaN 5388600 35 0 1413700 0.261 + -1 KIFNMKDQ 8 125 520.265937849248 1038.5173227652958 2 520.2660522460938 MULTI HCD FTMS 0 0 0 18155 310615.4375 0.2881924442545009 -24 0.5856246948242188 6 Oxidation (M) _KIFNM(Oxidation (M))KDQ_ REV__ENSG00000168491|ENST00000307588|CCDC110;REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110 43.85829265575387 0.18136530125488975 1 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 77.475 0 0 7.4602 0 0 0 125.07132277988673 125.07132277988673 30.048346890582224 0 0 0 0 2.2059771852360797 1.3010299956639813 0.2614393726401688 1.4084783502450002 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7.4602 - 3211 NaN NaN 911421.4 NaN 14608 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18162 75.747 NaN 815190 35 0 166210 0.262 + 5293 FFFLQDEDY 9 61 408.5149504878852 NaN 0 408.5149841308594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _FFFLQDEDY_ REV__ENSG00000204257|ENST00000374843|HLA-DMA;REV__ENST00000475627.1_1_6:32918275-32920806:-|nuORF;REV__ENST00000477541.1_1_6:32918272-32920828:-|nuORF;REV__nc|ENSG00000204257|P28067|HLA-DMA 2.302733041254933 0.2840881193086663 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.85762 0 0 277.8109545872954 387.14573084049067 664.956685427786 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.85762 + + 2 + NaN NaN 201170.4 NaN 14609 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18163 75.75 NaN 279570 35 0 49329 0.261 + 34125 YNTLLFLPY 9 54 572.3087158203125 NaN 0 572.3087158203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YNTLLFLPY_ ENSG00000120942|ENST00000376810|UBIAD1 15.847184025352803 0.21527282152051216 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.3552 0 0 604.3228943409797 388.1879781618249 992.5108725028047 0 0 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.3552 + + 82 + NaN NaN 119978.5 NaN 14610 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18164 75.753 NaN 445160 35 0 64592 0.262 + 18308 MPEPTVLSL 9 57 493.7650466488661 NaN 0 493.7650451660156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _MPEPTVLSL_ ENSG00000196683|ENST00000358435|TOMM7 52.268347100219714 0.03991945013439704 1 S{I|L}V{M(Oxidation (M))|F} 4 8 36.67 0 0 3.7209 0 0 131.09335324644843 405.1570223443969 536.2503755908454 0 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 S{I|L}V{M(Oxidation (M))|F} 3.7209 - 53 + NaN NaN 144776.8 NaN 14611 3551 18155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18166 75.758 NaN 937380 35 0 132970 0.327 + 26073 SPFRFEISF 9 87 565.2877672566918 1128.5609815801836 2 565.2875366210938 MULTI HCD FTMS 0 0 0 18165 529196.625 0.3621522017293699 6 -0.0886688232421875 1 Unmodified _SPFRFEISF_ ENSG00000105011|ENST00000263382|ASF1B 84.5221896805406 0.004669506596793478 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F} 9 2 + 86.99 0 0 7.7081 7.7081 87.394 0 0 0 2.9295344801409726 2.9295344801409726 2.9295344801409726 2.9295344801409726 0 2.4291746928241125 1.5228787452803376 0.7742275032520141 0.2614393726401688 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}R{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}E{I|L}S{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}R{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[WT]|[RM]}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[WT]|[RM]}S{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}[{I|L}T]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[R{M(Oxidation (M))|F}]PS{M(Oxidation (M))|F} 7.7081;7.4485;7.1859;6.666;6.4443;6.1438;5.7131;5.191;4.4632;4.427 -;+;-;-;-;-;-;-;-;- + 1276 NaN NaN 223389.9 NaN 14612 3552 18165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18167 75.763 NaN 1661000 35 0 213680 0.261 -1 SSMDLRSFLL 10 101 592.8025974236541 1183.5906419141081 2 593.304931640625 MULTI HCD FTMS 0 0 0 18165 658596.75 0.4380133773975901 -16 0.3935394287109375 2 Oxidation (M) _SSM(Oxidation (M))DLRSFLL_ chr4:70523168-70523868|111|30.48|0.04|9.68|+|1|None,AMTN|1 29.081581746732265 0.240155558137004 1 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 83.658 0 0 7.0681 0 0 177.04231459785314 0 177.04231459785314 0 60.75048156944675 0 0 0 2.579689690656103 0 0.2614393726401688 1.341129063296272 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.0681 - 1795 NaN NaN 329368.8 NaN 14613 3552 18165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18168 75.766 NaN 439090 35 0 53861 0.261 + 8313 GYAHWIGLF 9 79 532.2716752795135 1062.5287976258269 2 532.2721557617188 MULTI HCD FTMS 0 0 0 18165 185570.296875 0.04678049268298124 28 -0.31618499755859375 3 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 79.93452657146344 0.0058735632865073864 1 [YG]AHW{I|L}G{I|L}{M(Oxidation (M))|F} 9 0 + 50.759 0 0 4.7772 4.7772 88.889 0 0 0 4.797955225363282 5.216525140920609 4.797955225363282 19.839190936484027 0 1.9489700043360187 1.5228787452803376 0 0 + + [YG]AHW{I|L}G{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}AVW[HS]{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}AWV[HS]{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[MS]|[{M(Oxidation (M))|F}A]}W[NG][W{I|L}];{[VA]|[{I|L}G]}{M(Oxidation (M))|F}AV{[QG]|[NA]}WW 4.7772;2.9101;2.9101;0.45684;0.15073 +;-;-;-;- + 1193 NaN NaN 155716.4 NaN 14614 3552 18165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18170 75.771 NaN 1628900 35 0 169500 0.327 -1 0 111 612.2690474290101 1222.5235419248202 2 612.2688598632812 MULTI HCD FTMS 0 0 0 18169 1109465.625 0.42761805413496246 -1 0.01263427734375 1 NaN NaN 1 D{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 32.451 0 0 2.6544 0 0 716.2479115216812 0 716.2479115216812 0 -2.5861790523480295 -2.5861790523480295 0 0 0.7742275032520141 0 0.46985651719853755 0 D{M(Oxidation (M))|F}{I|L}{I|L} 2.6544 - 1261 NaN NaN 343183.5 NaN 14615 3553 18169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18171 75.775 NaN 448200 35 0 53088 0.261 + 15598 LPDYTSPVVL 10 67 552.302694137512 1102.590835341824 2 552.3027954101562 MULTI HCD FTMS 0 0 0 18169 102764.7890625 0.1606150304069657 8 -0.105010986328125 2 Unmodified _LPDYTSPVVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 18.1463463914782 0.3413772152514074 1 S[VP]V{I|L} 5 5 36.026 0 0 3.2674 0 0 589.274980230249 0 589.274980230249 0 12.124759215276626 0 0 0 1.3807196863200843 0 0 0 + S[VP]V{I|L} 3.2674 + + 241 NaN NaN 149472.5 NaN 14616 3553 18169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18172 75.779 NaN 968390 35 0 117660 0.261 + 1216 AYLLYSLHL 9 71 546.8081024309009 1091.6016519286018 2 546.8084106445312 MULTI HCD FTMS 0 0 0 18169 331197.15625 0.056588601732682 14 -0.17095947265625 3 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 137.58523961978855 0.00014495867019203413 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 105.19 0 0 9.6361 9.6361 98.022 0 0 0 16.052659518797938 16.052659518797938 16.052659518797938 41.76091259055681 0 2.774227503252014 1.6989700043360187 1.1861818737241734 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};{I|L}{I|L}YAYS{I|L}H{I|L} 9.6361;5.8104 +;- + 361 NaN NaN 240605.7 NaN 14617 3553 18169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18173 75.782 NaN 160810 35 0 16313 0.261 + 22255 QPAQASQPSI 10 59 513.7650146484375 NaN 0 513.7650146484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _QPAQASQPSI_ REV__ENSG00000013364|ENST00000357402|MVP 10.799506525563784 0.33094140821724455 1 {I|L}N{M(Oxidation (M))|F}SV 5 -1 26.37 0 0 2.5714 0 0 225.1100208914998 237.08539758853752 462.19541848003735 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}N{M(Oxidation (M))|F}SV 2.5714 - 60 + NaN NaN 105353.7 NaN 14618 3553 18169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18174 75.785 NaN 483540 35 0 66715 0.261 + 34062 YNIEQRTVPE 10 78 624.8150347093905 NaN 0 624.815185546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YNIEQRTVPE_ REV__ENSG00000150672|ENST00000376104|DLG2;REV__nc|ENSG00000150672|Q15700-3|DLG2;REV__nc|ENSG00000150672|Q15700-4|DLG2;REV__nc|ENSG00000150672|Q15700-5|DLG2;REV__nc|ENSG00000150672|Q15700|DLG2 10.823927491677226 0.33092050725491123 1 {M(Oxidation (M))|F}HN 3 -1 11.07 0 0 0.88729 0 0 573.3316079961928 273.1239107721313 846.455518768324 0 0 0 0 0 0 0 0 0.4247425010840047 {M(Oxidation (M))|F}HN 0.88729 - 100 + NaN NaN 161188.9 NaN 14619 3553 18169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18175 75.789 NaN 477200 35 0 43265 0.264 -1 TGACPCKENVF 11 72 409.1832895446494 1224.5280392341483 3 409.517822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _TGAC(Carbamidomethyl (C))PCKENVF_ ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF;LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant 4.11662792887243 0.40086653484894175 1 {I|L}{I|L} 2 -1 18.583 0 0 1.5176 0 0 980.349692531803 0 980.349692531803 0 1.6722687557546543 0 0 0 0 0 0 0 {I|L}{I|L} 1.5176 - 31 + NaN NaN 162691.5 NaN 14620 3553 18169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18177 75.793 NaN 3771100 35 0 632920 0.327 + -1 LMEKYSFQF 9 98 403.52675555522757 1207.5584372658827 3 403.86151123046875 MULTI HCD FTMS 0 0 0 18176 1549213.875 1 0 0 1 Oxidation (M) _LM(Oxidation (M))EKYSFQF_ REV__ENSG00000171495|ENST00000399564|MROH2B;REV__nc|ENSG00000171495|Q7Z745-2|MROH2B 22.65808497894818 0.16459551161911185 1 K{I|L}{M(Oxidation (M))|F}E{I|L}{[MG]|[TS]}DQQ 10 -1 + 51.763 0 0 4.2866 4.2866 83.926 0 0 0 18.40288749933073 1.853415603609747 1.853415603609747 8.322646798160562 0 0.8807196863200843 0 1.1307196863200843 0.3054621874040891 K{I|L}{M(Oxidation (M))|F}E{I|L}{[MG]|[TS]}DQQ;{I|L}K{M(Oxidation (M))|F}E{I|L}{[MG]|[TS]}DQQ;K{I|L}{M(Oxidation (M))|F}E{[MS]|[{M(Oxidation (M))|F}A]}[TP]QQ;KYPE{[MS]|[{M(Oxidation (M))|F}A]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP};[C(Carbamidomethyl (C))K]{[C(Carbamidomethyl (C))E]|[WC]}{I|L}EE{I|L}K;{I|L}K{M(Oxidation (M))|F}E{[MS]|[{M(Oxidation (M))|F}A]}[TP]QQ;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YT][YN]{M(Oxidation (M))|F}{I|L}K;[{M(Oxidation (M))|F}V]{[YD]|[{M(Oxidation (M))|F}M]}[YN]{M(Oxidation (M))|F}{I|L}K 4.2866;3.5973;2.9831;2.597;2.3751;2.2939;0.32432;0.28643 -;-;-;-;-;-;-;- 878 + NaN NaN 658681.1 NaN 14621 3554 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18178 75.798 NaN 479090 35 0 70899 0.261 + 7132 FSAVFDEDK 9 91 529.2471066114895 1056.4796602897788 2 529.750244140625 MULTI HCD FTMS 0 0 0 18176 314994.4375 0.91976882735251 1 -0.0092926025390625 2 Unmodified _FSAVFDEDK_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-3|TACC2;nc|ENSG00000138162|O95359-5|TACC2;nc|ENSG00000138162|O95359-6|TACC2 19.256988751693697 0.19398022840297344 1 EGTMVHPTW 9 9 + 40.817 0 0 3.8635 3.8635 80.741 0 0 0 2.148415687162945 3.481362441963327 2.148415687162945 2.148415687162945 0 0.1989700043360188 0 0.5796896906561032 0 EGTMVHPTW;VC{[ES]|[DT]|[{I|L}C]}VHPTW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}APHVNT{[QG]|[NA]};VC{[ES]|[DT]|[{I|L}C]}VS{M(Oxidation (M))|F}TW;VC{[ES]|[DT]|[{I|L}C]}VHPASE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}SVNT{[QG]|[NA]};VC{[ES]|[DT]|[{I|L}C]}VS{M(Oxidation (M))|F}ASE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}APHVGGT{[QG]|[NA]};WTMVS{M(Oxidation (M))|F}TW;EG[HQ][VS]NTW 3.8635;3.6602;3.534;3.2835;3.2189;3.1573;2.8422;2.6665;2.6141;2.5631 -;-;-;-;-;-;-;-;-;- 1911 + NaN NaN 157093.4 NaN 14622 3554 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18180 75.803 NaN 758190 35 0 48252 0.326 + 28359 TPDMQHELI 9 88 550.2592708376053 NaN 0 550.2593383789062 PEAK HCD FTMS 0 0 0 18179 506115.375 0.24993945843774681 -24 0.558563232421875 1 Oxidation (M) _TPDM(Oxidation (M))QHELI_ REV__ENSG00000146090|ENST00000361132|RASGEF1C;REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C 41.8396318013385 0.07237558272173583 1 Q{M(Oxidation (M))|F}PD 4 -1 32.964 0 0 3.0008 0 0 198.09947320156238 410.1727388971313 608.2722120986937 0 0 0 0 0 1.2302046884880937 0 0.4247425010840047 0.2742275032520141 Q{M(Oxidation (M))|F}PD 3.0008 - 168 + NaN NaN 194940 NaN 14623 3555 18179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18181 75.807 NaN 1189500 35 0 101850 0.261 + 6747 FPQKFIDLL 9 109 560.8236929660164 1119.6328329988328 2 560.82373046875 MULTI HCD FTMS 0 0 0 18179 747144.375 0.1305663237880474 -12 0.2516632080078125 2 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 82.5293158979368 0.005033931517079822 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 79.839 0 0 7.1308 7.1308 90.022 0 0 0 20.36758077242795 16.478174818886373 16.478174818886373 9.208187539523749 0 1.5484550065040281 1.3979400086720375 1.2293036574208875 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};[QP]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}[{I|L}V]E;[QP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KEV{M(Oxidation (M))|F}{I|L}{I|L} 7.1308;6.3084;5.9967;5.6636;5.3117;5.1777;5.1742;5.1532;5.02;4.8412 +;-;-;-;-;-;-;-;-;- + 1914 NaN NaN 269022.9 NaN 14624 3555 18179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18182 75.81 NaN 711760 35 0 109070 0.261 + 22319 QPINFSVSL 9 69 502.7742891438418 1003.5340253544837 2 502.7747802734375 MULTI HCD FTMS 0 0 0 18179 355104.78125 0.18398976709947418 9 -0.11065673828125 3 Unmodified _QPINFSVSL_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 96.36657018975838 0.004359138328518304 1 [QP]{I|L}N{M(Oxidation (M))|F}SVS{I|L} 9 0 + 71.846 0 0 7.1593 7.1593 90.733 0 0 0 16.23705836786374 62.24646635591807 16.23705836786374 9.208187539523756 0 1.9361818737241734 0 0.7742275032520141 1.2302046884880937 + + [QP]{I|L}N{M(Oxidation (M))|F}SVS{I|L};[QP]{I|L}GG{M(Oxidation (M))|F}SVS{I|L};{[TV]|[{I|L}S]}[VS]{[WN]|[YH]}VS{I|L} 7.1593;6.2417;4.7276 +;-;- + 203 NaN NaN 188692.9 NaN 14625 3555 18179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18183 75.814 NaN 566850 35 0 181530 0.262 -1 0 54 413.1932919154025 824.372030897605 2 413.1935729980469 MULTI HCD FTMS 0 0 0 18179 338248.71875 0.5106453734665131 -11 0.22890472412109375 4 NaN NaN 1 C[KS] 3 -1 3.3008 0 0 0.4004 0 0 488.2331715314469 0 488.2331715314469 0 3.212112250009655 0 0 0 0 0 0 0 C[KS] 0.4004 - 2 NaN NaN 162509 NaN 14626 3555 18179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18185 75.818 NaN 977670 35 0 65133 0.327 -1 MNSTLTFFLL 10 106 601.8082769108884 NaN 0 601.8082885742188 PEAK HCD FTMS 0 0 0 18184 652147.5625 0.6311064345286622 -1 0.015777587890625 1 Oxidation (M) _M(Oxidation (M))NSTLTFFLL_ ENST00000392455.7_2_3:191109610-191109739:+|nuORF 39.94969957227396 0.13663696453471003 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N[EP]G 7 -1 40.452 0 0 3.3665 0 0 131.09367381625276 263.10373865299067 394.19741246924343 0 0 0 0 0 2.0356668758921828 0 0.46985651719853755 0.8441876774005248 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N[EP]G 3.3665 - 717 + NaN NaN 233067.9 NaN 14627 3556 18184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18186 75.823 NaN 646290 35 0 63544 0.261 + 35590 YYIFIPSKF 9 68 589.318302735094 1176.622052536988 2 589.8195190429688 MULTI HCD FTMS 0 0 0 18184 100387.8203125 0.004051361201060358 72 -1.4593505859375 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 47.748688679222035 0.03472022231463587 1 YY{M(Oxidation (M))|F}{I|L}{I|L}[PS]K{M(Oxidation (M))|F} 9 2 + 42.891 0 0 3.6453 3.6453 88.914 0 0 0 7.701812293369841 20.975300924686326 7.701812293369841 42.89136227485692 0 1.6747425010840047 1.6989700043360187 0 0 YY{M(Oxidation (M))|F}{I|L}{I|L}[PS]K{M(Oxidation (M))|F} 3.6453 - 186 NaN NaN 181858.3 NaN 14628 3556 18184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18188 75.828 NaN 105880000 35 0 12631000 0.327 + 13413 KYPENFFLL 9 95 585.8132425088911 1169.6119320845821 2 585.8140869140625 MULTI HCD FTMS 0 0 0 18187 134162720 0.676704993674934 -10 0.1894378662109375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 140.63315402491853 1.8728231636916273E-05 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.137 0 0 8.2195 8.2195 90.578 0 0 0 8.182503180159344 16.478174818886373 8.182503180159344 8.182503180159344 0 2.555462187404089 0 0.2614393726401688 2.034318117920506 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KYPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]NYK{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.2195;7.52;7.4323;6.7327;6.5091;6.3195;6.2853;6.126;5.9737;5.5819 +;-;-;-;-;-;-;+;-;- + 10125 NaN NaN 629895.1 NaN 14629 3557 18187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18189 75.832 NaN 929850 35 0 94643 0.261 + 21911 QDPELLSVI 9 83 507.2793766551525 1012.544200377105 2 507.2794494628906 MULTI HCD FTMS 0 0 0 18187 478145.4375 0.2956541394795643 8 -0.09471893310546875 2 Unmodified _QDPELLSVI_ ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1 29.84058131909904 0.11198220037953927 1 {I|L}SV{I|L} 4 5 51.67 0 0 5.103 0 0 582.2630482404312 0 582.2630482404312 0 40.24350030035414 0 0 0 1.5 0 0.9247425010840047 0 + {I|L}SV{I|L} 5.103 + + 339 NaN NaN 229796.8 NaN 14630 3557 18187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18190 75.835 NaN 499560 35 0 51425 0.261 + 25177 SALQELEEL 9 74 516.2665337818735 NaN 0 516.2666015625 PEAK HCD FTMS 0 0 0 18187 108515.0234375 0.14134799927870398 6 -0.0762939453125 3 Unmodified _SALQELEEL_ ENSG00000004897|ENST00000066544|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;nc|ENSG00000004897|P30260-2|CDC27 76.82478488871298 0.004028098895544731 1 EE{I|L}EQ 5 6 50.961 0 0 4.9452 0 0 131.09506190829273 268.1301363580688 399.22519826636153 0 0 0 0 0 1.774227503252014 0 0.535666875892183 0.7059771852360797 EE{I|L}EQ 4.9452 - 299 + NaN NaN 155738.3 NaN 14631 3557 18187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18191 75.839 NaN 1093700 35 0 327130 0.261 -1 YCHECGKSF 9 79 565.7236925556138 1129.4328321780274 2 565.7236328125 MULTI HCD FTMS 0 0 0 18187 105873.125 0.12131607788057201 -7 0.12487030029296875 4 Carbamidomethyl (C) _YCHEC(Carbamidomethyl (C))GKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 7.910154910731844 0.2910521888787154 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP]{M(Oxidation (M))|F}E{I|L}S 8 -1 41.749 0 0 3.6965 0 0 0 162.92757176572323 162.92757176572323 11.303629979011859 0 0 0 0 0 1.5228787452803376 0.4247425010840047 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP]{M(Oxidation (M))|F}E{I|L}S 3.6965 - 670 NaN NaN 247610.9 NaN 14632 3557 18187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18192 75.842 NaN 354400 35 0 28010 0.261 + 18222 MPDPWAEFHL 10 78 629.7818532972743 NaN 0 629.7813110351562 PEAK HCD FTMS 0 0 0 18187 261283.59375 0.48485622208013457 -8 0.14418792724609375 5 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 71.92227651296345 0.022719976497769596 1 H{M(Oxidation (M))|F}E 3 9 22.858 0 0 1.8177 0 0 131.09454231001365 710.2604464166624 841.3549887266761 0 0 0 0 0 1.2887254899964358 0 0.6694451763165201 0 H{M(Oxidation (M))|F}E 1.8177 - 227 + NaN NaN 139705.9 NaN 14633 3557 18187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18194 75.847 NaN 1199700 35 0 152490 0.326 + 30431 VLPKKGWLLFF 11 80 449.94426386909817 NaN 0 450.2785339355469 PEAK HCD FTMS 0 0 0 18193 114403.296875 0.34010793619295215 2 -0.0220947265625 1 Unmodified _VLPKKGWLLFF_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF 7.477065608646677 0.3209098616188029 1 {M(Oxidation (M))|F}N 2 10 14.266 0 0 1.5889 0 0 119.50881886679515 514.2288831817397 633.7377020485349 0 0 0 0 0 0 0 0 0.6307196863200843 {M(Oxidation (M))|F}N 1.5889 - 176 + NaN NaN 265126.8 NaN 14634 3558 18193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18196 75.853 NaN 7884000 35 0 1411700 0.327 + 28504 TPQFPDMIL 9 98 539.2679517160655 1076.5213504989308 2 539.268310546875 MULTI HCD FTMS 0 0 0 18195 8323463.5 0.4452706311502824 -17 0.33872222900390625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 93.16586880292088 0.00444300900000894 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 77.858 0 0 7.2324 7.2324 87.31 0 0 0 4.230078252872502 16.478174818886373 4.230078252872502 4.230078252872502 0 1.8494850021680094 0 1.4559771852360797 0.2742275032520141 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]T{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YE]K{[{M(Oxidation (M))|F}C]|[YS]}{I|L};[TP]WA[{M(Oxidation (M))|F}E]{I|L}T{I|L} 7.2324;6.8395;6.3723;5.9291;5.7294;3.4058;2.8976;2.0137;0.88691;0.43185 -;+;-;-;-;-;-;-;-;- + 1983 NaN NaN 729303.2 NaN 14635 3559 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18197 75.857 NaN 1582500 35 0 700420 0.261 + 17282 LYPQFMFHL 9 75 606.2992298592186 1210.583906785237 2 606.2998657226562 MULTI HCD FTMS 0 0 0 18195 1088174.125 0.06797647397108177 35 -0.49631500244140625 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 77.98433622928108 0.006504613272346738 1 [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 67.026 0 0 5.5366 0 0 0 412.1993807428344 412.1993807428344 54.88560627359831 0 0 0 0 1.9802046884880937 2 0 0.7302046884880937 + [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5366 + + 591 + NaN NaN 324692.2 NaN 14636 3559 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18198 75.861 NaN 1071200 35 0 104070 0.261 + 6265 FPFERLYDL 9 104 600.3083636196803 1198.6021743061606 2 600.30908203125 MULTI HCD FTMS 0 0 0 18195 419808.625 0.4172360258960796 5 -0.05975341796875 3 Unmodified _FPFERLYDL_ ENSG00000144028|ENST00000323853|SNRNP200 75.5705956163825 0.007285660612518157 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YVE 9 2 + 82.066 0 0 6.8468 6.8468 87.45 0 0 0 0.2602781855730143 52.51377987377856 0.2602781855730143 6.23732915342201 0 2.474907363720609 2 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YVE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}ER{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}R{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}R{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ER{M(Oxidation (M))|F}{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}EY[R{I|L}]VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ER{I|L}{M(Oxidation (M))|F}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ER{M(Oxidation (M))|F}{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}EY[R{I|L}]D{I|L} 6.8468;6.3265;6.3041;6.2413;5.6986;5.0707;4.9192;4.5787;4.528;4.3765 -;+;+;-;-;-;-;-;-;- + 4334 NaN NaN 242869.2 NaN 14637 3559 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18199 75.864 NaN 1137800 35 0 308440 0.261 + 33666 YKGPEAAQCIL 11 92 596.804410458233 1191.5942679832658 2 596.8049926757812 MULTI HCD FTMS 0 0 0 18195 528686.25 0.3520775203361772 5 -0.05975341796875 4 Unmodified _YKGPEAAQCIL_ REV__ENSG00000036448|ENST00000262113|MYOM2;REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant 31.26834338654808 0.19318467762437158 1 KYPE[PA]{I|L}N 8 -1 53.699 0 0 4.5065 0 0 0 276.0982760065063 276.0982760065063 20.806817602088806 0 0 0 0 0.5 0 0.3252574989159953 1.329689690656103 KYPE[PA]{I|L}N 4.5065 - 1426 + NaN NaN 255514.3 NaN 14638 3559 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18203 75.881 NaN 1557000 35 0 235550 0.327 -1 SSMDLRSFLL 10 105 592.8025974236541 1183.5906419141081 2 592.80224609375 MULTI HCD FTMS 0 0 0 18202 1287897.875 0.5642301317086773 -16 0.26296234130859375 1 Oxidation (M) _SSM(Oxidation (M))DLRSFLL_ chr4:70523168-70523868|111|30.48|0.04|9.68|+|1|None,AMTN|1 29.081581746732265 0.240155558137004 1 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 83.699 0 0 7.0716 0 0 177.0425739972672 0 177.0425739972672 0 65.02714242295269 0 0 0 2.504432191740108 0 0.5138793319624578 1.3441876774005248 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.0716 - 1902 NaN NaN 314043.5 NaN 14639 3562 18202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18204 75.886 NaN 620210 35 0 110350 0.264 + 34026 YMPYWMIYG 9 51 408.5149592926858 NaN 0 408.5149230957031 PEAK HCD FTMS 0 0 0 18202 102795.5859375 0.08181799425478505 -8 0.08861541748046875 2 Unmodified _YMPYWMIYG_ ENSG00000083067|ENST00000677713|TRPM3;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1 2.302733041254933 0.2840881193086663 1 Y 1 8 3.9794 0 0 0.48826 0 0 260.7923564742403 388.12995325260005 648.9223097268404 0 0 0 0 0 0 0 0 0 + Y 0.48826 + + 5 + NaN NaN 181153.9 NaN 14640 3562 18202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18205 75.889 NaN 6718000 35 0 1719900 0.261 + -1 KIFGKMGNE 9 126 520.265937849248 1038.5173227652958 2 520.2664184570312 MULTI HCD FTMS 0 0 0 18202 434844.59375 0.4034536317714987 -13 0.19843292236328125 3 Oxidation (M) _KIFGKM(Oxidation (M))GNE_ REV__ENSG00000115361|ENST00000233710|ACADL 39.94969957227396 0.06557568441294001 1 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 72.247 0 0 6.9567 0 0 0 125.0713254112318 125.0713254112318 23.08114473761087 0 0 0 0 2.1989700043360187 1.3010299956639813 0.25 1.205112052208703 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 6.9567 - 2513 NaN NaN 1108362.9 NaN 14641 3562 18202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18206 75.893 NaN 544080 35 0 119720 0.261 + -1 IWCSRRKMLMG 11 58 485.24542750838384 1452.7144531253516 3 485.2454833984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _IWC(Carbamidomethyl (C))SRRKM(Oxidation (M))LMG_ REV__ENST00000289734.11_1_8:41556976-41559097:-|nuORF 9.764250979337305 0.37200617284565546 1 V{I|L}SV{I|L} 5 -1 38.443 0 0 2.6463 0 0 923.3887806623062 0 923.3887806623062 0 26.453650195120844 0 0 0 0.3494850021680094 0 0 0 V{I|L}SV{I|L} 2.6463 - 45 NaN NaN 162957.2 NaN 14642 3562 18202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18207 75.896 NaN 427390 35 0 42212 0.261 -1 SFMEVQSVI 9 80 528.2559442470814 NaN 0 528.2559204101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _SFM(Oxidation (M))EVQSVI_ ERCC5|p.I655M|1|0.12|ENSG00000134899|chr13:102865677-102865677|T/G|missense_variant 29.081581746732265 0.1264406993618811 1 VS{M(Oxidation (M))|F} 3 -1 26.031 0 0 2.4685 0 0 131.09481592871515 587.2130831354124 718.3078990641275 0 0 0 0 0 0.9604093769761877 0 0.8494850021680094 0 VS{M(Oxidation (M))|F} 2.4685 - 80 + NaN NaN 159982.4 NaN 14643 3562 18202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18208 75.899 NaN 450340 35 0 35354 0.261 + 19707 NYAENILTL 9 75 525.7765018769534 1049.5384508207067 2 525.7770385742188 MULTI HCD FTMS 0 0 0 18202 108705.9140625 0.2666040186928423 -8 0.08861541748046875 6 Unmodified _NYAENILTL_ ENSG00000132436|ENST00000433017|FIGNL1 57.24910588100465 0.021429789259086996 1 [YN]AEN{I|L}{I|L}T{I|L} 9 0 + 71.481 0 0 6.8107 6.8107 89.428 0 0 0 19.938419519471395 47.92419485234568 19.938419519471395 9.208187539523749 0 1.579689690656103 1.6989700043360187 0.3252574989159953 0.7059771852360797 + + [YN]AEN{I|L}{I|L}T{I|L};[YN]AEGG{I|L}{I|L}T{I|L};[YN][DG]AA{I|L}{I|L}T{I|L} 6.8107;5.9333;4.5855 +;-;- + 437 NaN NaN 150038.6 NaN 14644 3562 18202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18210 75.904 NaN 2114100 35 0 214110 0.327 -1 0 117 612.2690474290101 1222.5235419248202 2 612.2691040039062 MULTI HCD FTMS 0 0 0 18209 1952881.125 0.7526931955457353 9 -0.09084320068359375 1 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 32.847 0 0 2.6868 0 0 684.2091218923163 0 684.2091218923163 0 -0.3065192740994078 -0.3065192740994078 0 0 1.0451140161145327 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.6868 - 1125 NaN NaN 414620.8 NaN 14645 3563 18209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18211 75.908 NaN 579570 35 0 70859 0.261 + 35591 YYIFIPSKF 9 74 589.317555084033 1176.6205572348658 2 589.31787109375 MULTI HCD FTMS 0 0 0 18209 243303.359375 0.4829793326582783 -1 0.0220489501953125 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 43.77239144664712 0.04802738721622131 1 YY{I|L}[KS]VY{[QN]|[E{I|L}]|[KN]} 9 5 + 42.571 0 0 3.618 3.618 80.455 0 0 0 2.570071809000609 2.1028685019278726 2.1028685019278726 2.1028685019278726 0 1.1989700043360187 2 0 0 YY{I|L}[KS]VY{[QN]|[E{I|L}]|[KN]};YY{I|L}[KS]AASK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}[KS][QT]K{M(Oxidation (M))|F};YYV[KT]VY{[QN]|[E{I|L}]|[KN]};YYV[KT]AASK{M(Oxidation (M))|F};YYV[KT][QT]K{M(Oxidation (M))|F};YYV[KS]{I|L}Y{[QN]|[E{I|L}]|[KN]};YYV[KS][VG]SK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F} 3.618;3.4393;3.3996;3.3958;3.0012;2.8225;2.779;2.6218;2.4431;1.8689 -;-;-;-;-;-;-;-;-;- 749 + NaN NaN 174486.9 NaN 14646 3563 18209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18213 75.913 NaN 1795300 35 0 311020 0.326 + -1 LMEKYSFQF 9 88 403.5266794480836 1207.5582089444508 3 403.526611328125 MULTI HCD FTMS 0 0 0 18212 1480030 0.9174296714141915 3 -0.028411865234375 1 Oxidation (M) _LM(Oxidation (M))EKYSFQF_ REV__ENSG00000171495|ENST00000399564|MROH2B;REV__nc|ENSG00000171495|Q7Z745-2|MROH2B 8.97624648632007 0.2828035605319045 1 KY{I|L} 3 -1 31.198 0 0 2.5836 0 0 0 800.2952160985047 800.2952160985047 3.182503180159344 0 0 0 0 0.5 0 0 0 KY{I|L} 2.5836 - 311 + NaN NaN 363511 NaN 14647 3564 18212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18214 75.918 NaN 570770 35 0 64769 0.261 + 1217 AYLLYSLHL 9 74 546.8081024309009 1091.6016519286018 2 546.807861328125 MULTI HCD FTMS 0 0 0 18212 230834.15625 0.0394405020931726 25 -0.30727386474609375 2 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 109.62928328672726 0.0030029239606406397 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 97.133 0 0 8.8982 8.8982 98.424 0 0 0 10.313572109354752 10.313572109354752 10.313572109354752 97.13283468773298 0 2.7302046884880937 1.6989700043360187 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 8.8982 + + 200 NaN NaN 179739 NaN 14648 3564 18212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18216 75.922 NaN 1335900 35 0 86968 0.327 + 28360 TPDMQHELI 9 102 550.2592708376053 NaN 0 550.2591552734375 PEAK HCD FTMS 0 0 0 18215 842600.875 0.41610908654310613 -14 0.1968994140625 1 Oxidation (M) _TPDM(Oxidation (M))QHELI_ REV__ENSG00000146090|ENST00000361132|RASGEF1C;REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C 53.832793166522166 0.036978982887966305 1 PQ{M(Oxidation (M))|F}PDST 7 -1 44.166 0 0 4.0206 0 0 101.04788596582371 222.08822046451408 323.1361064303378 0 0 0 0 0 1.305462187404089 0 1.066901560044258 0.28872548999643577 PQ{M(Oxidation (M))|F}PDST 4.0206 - 622 + NaN NaN 290935.2 NaN 14649 3565 18215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18217 75.927 NaN 432990 35 0 84477 0.261 + 27681 TAMDVVYAL 9 57 491.7493215224185 981.484090111637 2 491.7494201660156 MULTI HCD FTMS 0 0 0 18215 535629.8125 0.5124064627446778 -11 0.12908935546875 2 Unmodified _TAMDVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 42.09456458481378 0.05572955244001856 1 S[HQ]VYA{I|L} 7 5 53.32 0 0 5.4326 0 0 165.0783405988297 0 165.0783405988297 0 44.736607226101555 0 0 0 1.4247425010840047 0 1.274227503252014 0 S[HQ]VYA{I|L} 5.4326 - 200 NaN NaN 158210.3 NaN 14650 3565 18215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18218 75.93 NaN 343110 35 0 46883 0.261 + 11366 IYNKYWPLF 9 74 622.3294131674128 NaN 0 622.3290405273438 PEAK HCD FTMS 0 0 0 18215 221956.921875 0.7423215323386413 1 -0.0124359130859375 3 Unmodified _IYNKYWPLF_ ENSG00000104660|ENST00000321250|LEPROTL1;LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;nc|ENSG00000104660|O95214-2|LEPROTL1 66.45667989310934 0.013251654575578966 1 KYWV 4 6 35.72 0 0 2.8745 0 0 390.18853717291296 273.12412439517817 663.3126615680911 0 0 0 0 0 2.1307196863200843 0 0 0 KYWV 2.8745 - 322 + NaN NaN 131411.3 NaN 14651 3565 18215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18220 75.935 NaN 5015600 35 0 424930 0.327 + 6748 FPQKFIDLL 9 118 560.8236929660164 1119.6328329988328 2 560.8240966796875 MULTI HCD FTMS 0 0 0 18219 5659833 0.9890773628112715 -1 0.0124359130859375 1 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 149.91393105778798 8.917243180786556E-06 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 97.21 0 0 8.6823 8.6823 92.525 0 0 0 27.251483408486365 41.564971962028324 27.251483408486365 9.208187539523749 0 2.113364334130467 1.3010299956639813 1.7992997296092277 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}VE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}V{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}VE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{I|L}{M(Oxidation (M))|F}{I|L} 8.6823;7.8599;7.7482;7.6547;7.5214;7.2344;6.9837;6.9258;6.8323;6.7513 +;-;-;-;-;-;-;-;-;- + 6777 NaN NaN 701798.6 NaN 14652 3566 18219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18222 75.941 NaN 912080 35 0 63350 0.326 + 10195 IFYQGFSDLL 10 98 601.8082769108884 NaN 0 601.8076782226562 PEAK HCD FTMS 0 0 0 18221 643525.25 0.6227623154792762 10 -0.0969696044921875 1 Unmodified _IFYQGFSDLL_ REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5 39.957323273324995 0.1365940666268054 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N[EP]G 7 -1 37.871 0 0 3.1517 0 0 131.09451812784033 263.1029451959594 394.19746332379975 0 0 0 0 0 2.0994850021680094 0 0.5228787452803376 0.6109243748081782 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N[EP]G 3.1517 - 934 + NaN NaN 224160.8 NaN 14653 3567 18221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18223 75.946 NaN 491590 35 0 41834 0.264 + -1 TEWWMCSLL 9 63 409.1832895446494 1224.5280392341483 3 409.5177917480469 MULTI HCD FTMS 0 0 0 18221 187055.1875 0.27434416074171336 1 -0.015411376953125 2 Carbamidomethyl (C) _TEWWMC(Carbamidomethyl (C))SLL_ REV__ENST00000468435.6_1_9:6477670-6477709:+|nuORF 2.735195868890462 0.3302822318919627 1 {I|L}{I|L} 2 -1 19.464 0 0 1.5895 0 0 980.3503181421546 0 980.3503181421546 0 2.552725051033061 0 0 0 0 0 0 0 {I|L}{I|L} 1.5895 + + 36 + NaN NaN 153987.7 NaN 14654 3567 18221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18224 75.949 NaN 912960 35 0 145640 0.261 + 12314 KLYRDVMVE 9 115 576.8083881587963 1151.6022233843926 2 576.80908203125 MULTI HCD FTMS 0 0 0 18221 626508.125 1 0 0 3 Unmodified _KLYRDVMVE_ ENSG00000131115|ENST00000313040|ZNF227;ENSG00000167380|ENST00000337433|ZNF226;ENST00000590759.1_1_19:44674233-44676429:+|nuORF;ENST00000591019.5_1_19:44732652-44732808:+|nuORF;nc|ENSG00000167380|Q9NYT6-2|ZNF226;ZNF227|p.F171Sfs*16|1|0.08|ENSG00000131115|chr19:44234941-44234942|-/CTTA|frameshift_variant 39.94969957227396 0.06557568441294001 1 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L}{I|L} 8 8 60.796 0 0 5.2793 0 0 0 125.07278392160096 125.07278392160096 33.36362017738055 0 0 0 0 2.341129063296272 1.0457574905606752 0.2614393726401688 0.9698565171985375 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L}{I|L} 5.2793 - 2768 NaN NaN 239916.3 NaN 14655 3567 18221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18225 75.952 NaN 348010 35 0 29298 0.261 + 31230 VVPYQADLL 9 73 509.28438533016487 1016.5542177271298 2 510.75030517578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VVPYQADLL_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 12.531546534597751 0.2520865569484384 1 {NN|[MP]|[D{I|L}]|[EV]}A{[C(Carbamidomethyl (C))E]|[WC]}AD{I|L} 8 -1 28.082 0 0 2.7625 0 0 0 126.1431520230076 126.1431520230076 4.384249941294065 0 0 0 0 0 1.0457574905606752 0 0 {NN|[MP]|[D{I|L}]|[EV]}A{[C(Carbamidomethyl (C))E]|[WC]}AD{I|L} 2.7625 - 150 NaN NaN 132719.7 NaN 14656 3567 18221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18227 75.957 NaN 129660000 35 0 16025000 0.327 + 13414 KYPENFFLL 9 89 585.8132425088911 1169.6119320845821 2 585.8141479492188 MULTI HCD FTMS 0 0 0 18226 126832976 0.6397344077539056 1 -0.0068206787109375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 125.52916310638031 0.0008761121089336018 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.817 0 0 8.1067 8.1067 90.396 0 0 0 8.310384486277798 16.478174818886373 8.310384486277798 8.310384486277798 0 2.555462187404089 0 0.2742275032520141 2.0356668758921828 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 8.1067;7.3962;7.3194;6.6089;6.4784;6.3951;6.364;6.2055;5.7679;5.6911 +;-;-;-;-;-;-;-;-;- + 6657 NaN NaN 550820.6 NaN 14657 3568 18226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18229 75.963 NaN 2303100 35 0 206590 0.346 + 11347 IYNGKLFDLL 10 123 598.3396289719675 1194.664705010735 2 598.3403930664062 MULTI HCD FTMS 0 0 0 18228 1196784.875 0.1515634324029693 -14 0.1613006591796875 1 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 128.57297698046145 2.2510087319712773E-05 1 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 95.786 0 0 8.0178 8.0178 86.865 0 0 0 0.6343220845074882 16.53212513775344 0.6343220845074882 0.6343220845074882 0 2.5783409326844264 2 0 0.566901560044258 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NGQV{I|L}Y{I|L}{I|L};[Y{I|L}]NGQVY{I|L}{I|L}{I|L};[Y{I|L}]NGK{I|L}D{I|L}{M(Oxidation (M))|F}{I|L};[YN]{I|L}GK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 8.0178;7.9648;7.2507;7.1976;7.1048;6.3377;5.8345;5.7122;5.3759;5.3055 +;+;-;-;-;-;-;-;-;- + 10325 NaN NaN 636841.1 NaN 14658 3569 18228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18231 75.97 NaN 185240 35 0 48584 0.327 + 19678 NVYVGDALL 9 56 482.26072046087364 NaN 0 482.2607727050781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NVYVGDALL_ ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4;nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-7|TRPC4;TRPC4|p.H151Ifs*7|1|0.36|ENSG00000133107|chr13:37746383-37746383|G/-|frameshift_variant 47.748688679222035 0.05342496295576811 1 {I|L}AD 3 8 27.307 0 0 2.8371 0 0 131.0912385487258 529.2432955377561 660.3345340864819 0 0 0 0 0 0.805462187404089 0 0.3054621874040891 0 {I|L}AD 2.8371 - 17 + NaN NaN 109014.4 NaN 14659 3570 18230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18232 75.974 NaN 575470 35 0 41684 0.261 + 19802 NYAWVYYHL 9 93 614.7929236904577 NaN 0 614.7930297851562 PEAK HCD FTMS 0 0 0 18230 326861.625 1 0 0 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 78.7280429016045 0.0034054849820771994 1 {M(Oxidation (M))|F}AWVYY 6 4 46.38 0 0 3.7782 0 0 130.0526920080652 265.12909876041255 395.18179076847775 0 0 0 0 0 2.06295299324845 0 0 0 {M(Oxidation (M))|F}AWVYY 3.7782 - 254 + NaN NaN 178751.1 NaN 14660 3570 18230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18233 75.978 NaN 1290400 35 0 599970 0.261 -1 YCHECGKSF 9 65 565.7236041398335 1129.4326553464668 2 565.7237548828125 MULTI HCD FTMS 0 0 0 18230 414338.6875 0.3353069622401156 -18 0.212066650390625 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HECGKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 4.75600775471527 0.31496297302216103 1 S{I|L}Q[RN]{I|L}S{M(Oxidation (M))|F} 8 -1 43.766 0 0 3.875 0 0 165.94879692804483 0 165.94879692804483 0 40.27076775384947 0 0 0 0 0 0.7134679910804405 0 S{I|L}Q[RN]{I|L}S{M(Oxidation (M))|F} 3.875 - 89 + NaN NaN 288209.2 NaN 14661 3570 18230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18234 75.981 NaN 855260 35 0 175000 0.261 + 11659 IYVPDIRNVF 10 61 618.3429766377357 1234.6714003422712 2 618.8447875976562 MULTI HCD FTMS 0 0 0 18230 111174.09375 0.1468493911330908 -9 0.09442138671875 4 Unmodified _IYVPDIRNVF_ ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 32.037481411007896 0.2145045983280644 1 [Y{I|L}]VPD{I|L}[RN]V{M(Oxidation (M))|F} 10 0 + 52.797 0 0 4.2762 4.2762 90.011 0 0 0 2.351453248366795 45.80706579873059 2.351453248366795 52.79676584209078 0 1.8182503180159344 1.6989700043360187 0 0 + + [Y{I|L}]VPD{I|L}[RN]V{M(Oxidation (M))|F} 4.2762 + + 162 NaN NaN 216527.1 NaN 14662 3570 18230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18236 75.986 NaN 11530000 35 0 2075600 0.327 + 28505 TPQFPDMIL 9 95 539.2679517160655 1076.5213504989308 2 539.2679443359375 MULTI HCD FTMS 0 0 0 18235 16308646 0.8724446376951769 -5 0.050689697265625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 89.40071534611396 0.0045416704840156395 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 77.88 0 0 7.2344 7.2344 88.081 0 0 0 5.642492736872612 64.11064417780605 5.642492736872612 6.020599913279625 0 1.8494850021680094 0 1.73239816956497 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}[QP]T{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}{M(Oxidation (M))|F}QPT{I|L};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}{I|L}QPT{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}P{M(Oxidation (M))|F}QPT{I|L};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}[QP]{I|L}T{I|L} 7.2344;6.6752;6.16;5.8198;5.7168;2.212;1.5331;1.2369;1.009;0.70372 -;+;-;-;-;-;-;-;-;- + 2630 NaN NaN 685073.4 NaN 14663 3571 18235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18237 75.99 NaN 1477100 35 0 661010 0.261 + 17283 LYPQFMFHL 9 75 606.2992298592186 1210.583906785237 2 606.2996215820312 MULTI HCD FTMS 0 0 0 18235 759472.875 0.04744303961388545 47 -1.0416488647460938 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 60.38955033654506 0.017036522530421875 1 [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}] 9 0 + 67.941 0 0 5.6122 5.6122 89.238 0 0 0 57.48319373273603 3.2568864632742844 3.2568864632742844 13.455612550363796 0 1.4361818737241734 2 0 0.4247425010840047 + + [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[QP]Y{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}] 5.6122;4.5007;1.306 +;-;- + 234 + NaN NaN 304376.8 NaN 14664 3571 18235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18239 75.995 NaN 676060 35 0 130490 0.327 -1 PPPPEESCPAK 11 82 604.7872892606894 NaN 0 604.7872314453125 PEAK HCD FTMS 0 0 0 18238 61134.04296875 0.07274983659739398 1 -0.0091400146484375 1 Carbamidomethyl (C) _PPPPEESC(Carbamidomethyl (C))PAK_ ENSG00000253276|ENST00000523505|CCDC71L 19.361941925380144 0.26146265060873025 1 YPEN 4 -1 25.24 0 0 2.0902 0 0 128.09627052143543 573.2389620416624 701.3352325630979 0 0 0 0 0 0.3054621874040891 0 0.9802046884880937 0.4247425010840047 YPEN 2.0902 - 284 + NaN NaN 188011.4 NaN 14665 3572 18238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18240 75.999 NaN 688220 35 0 92943 0.261 + 20330 NYQVQFVTL 9 80 556.2925476653705 1110.570542397541 2 556.29345703125 MULTI HCD FTMS 0 0 0 18238 259109.125 0.21748723377690296 -4 0.0377349853515625 2 Unmodified _NYQVQFVTL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 114.20165948288297 0.0022564706844261533 1 [YN]QVQ{M(Oxidation (M))|F}VT{I|L} 9 0 + 99.148 0 0 8.9277 8.9277 92.863 0 0 0 9.701140738196017 9.701140738196017 9.701140738196017 9.208187539523749 0 2.6989700043360187 1.3010299956639813 0 1.055462187404089 + + [YN]QVQ{M(Oxidation (M))|F}VT{I|L};[YN][AG]VQ{M(Oxidation (M))|F}VT{I|L};[YN]QV[AG]{M(Oxidation (M))|F}VT{I|L};[YN][AG]V[AG]{M(Oxidation (M))|F}VT{I|L};[YN]QVQ{M(Oxidation (M))|F}S{I|L}{I|L};[YN][AG]VQ{M(Oxidation (M))|F}S{I|L}{I|L};[YN]QV[AG]{M(Oxidation (M))|F}S{I|L}{I|L};[YN][AG]V[AG]{M(Oxidation (M))|F}S{I|L}{I|L};[YN]QVQ[{I|L}T]V{M(Oxidation (M))|F};[YN]QVQ[{I|L}V]T{M(Oxidation (M))|F} 8.9277;8.0985;8.0985;7.2733;6.4019;5.5728;5.5728;4.7475;4.7234;4.4936 +;-;-;-;-;-;-;-;-;- + 639 NaN NaN 183883.8 NaN 14666 3572 18238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18242 76.004 NaN 1442600 35 0 202830 0.327 + 4405 EYEGKWLLF 9 111 592.8025974236541 1183.5906419141081 2 592.8026123046875 MULTI HCD FTMS 0 0 0 18241 1354846.125 0.5935602677764656 -5 0.046875 1 Unmodified _EYEGKWLLF_ ENSG00000162607|ENST00000339950|USP1 32.78568957990786 0.09846250359632436 1 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 6 75.836 0 0 6.4073 0 0 177.04190261054845 0 177.04190261054845 0 59.80565600204643 0 0 0 2.425833702434617 0 0 1.2753187046026266 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6.4073 - 1802 NaN NaN 305005.5 NaN 14667 3573 18241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18243 76.008 NaN 707830 35 0 166840 0.261 + 6906 FPVEVNTVL 9 65 509.28438533016487 1016.5542177271298 2 509.2845458984375 MULTI HCD FTMS 0 0 0 18241 470917.625 0.23818977739269595 -15 0.1572113037109375 2 Unmodified _FPVEVNTVL_ ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 34.40172386719151 0.0910440009062557 1 NTV{I|L} 4 5 50.745 0 0 4.9919 0 0 571.3003601012731 0 571.3003601012731 0 42.78659694992122 0 0 0 0.75 0 0.805462187404089 0.3252574989159953 + NTV{I|L} 4.9919 + + 21 NaN NaN 187843.6 NaN 14668 3573 18241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18245 76.013 NaN 701370 35 0 134370 0.411 + -1 IWCSRRKMLMG 11 86 485.24542750838384 1452.7144531253516 3 485.245849609375 MULTI HCD FTMS 0 0 0 18244 108533.8671875 0.19321949717410086 -2 0.01828765869140625 1 Carbamidomethyl (C),Oxidation (M) _IWC(Carbamidomethyl (C))SRRKM(Oxidation (M))LMG_ REV__ENST00000289734.11_1_8:41556976-41559097:-|nuORF 9.764250979337305 0.37200617284565546 1 [W{I|L}]{[YC]|[HE]}C{I|L}[PG]S{I|L}SV{I|L} 13 -1 + 59.782 0 0 4.1152 4.1152 82.063 0 0 0 16.17564864566578 24.714269180289527 16.17564864566578 4.423591484604508 0 0.8252574989159953 1.6989700043360187 0.3494850021680094 0 [W{I|L}]{[YC]|[HE]}C{I|L}[PG]S{I|L}SV{I|L};[W{I|L}]{[YC]|[HE]}C{I|L}{[NV]|[RG]}{I|L}DV{I|L};[W{I|L}]{[YC]|[HE]}CK[EP]{I|L}SV{I|L};[W{I|L}]{[YC]|[HE]}CK[TP]{I|L}DV{I|L};[{I|L}V][YC(Carbamidomethyl (C))]V{M(Oxidation (M))|F}[PG]S{I|L}W{I|L};[{I|L}V][YC(Carbamidomethyl (C))]V{M(Oxidation (M))|F}[PG]SW{I|L}{I|L};[{I|L}V][YC(Carbamidomethyl (C))]V{[C(Carbamidomethyl (C))E]|[WC]}V{I|L}W{I|L};[{I|L}V][YC(Carbamidomethyl (C))]V{[C(Carbamidomethyl (C))E]|[WC]}VW{I|L}{I|L};[{I|L}V][YC(Carbamidomethyl (C))][C(Carbamidomethyl (C))D]{I|L}V{I|L}W{I|L};[{I|L}V][YC(Carbamidomethyl (C))][C(Carbamidomethyl (C))D]{I|L}VW{I|L}{I|L} 4.1152;3.8107;3.8107;3.4822;1.4853;1.3641;1.3041;1.1829;0.88964;0.76843 -;-;-;-;-;-;-;-;-;- 1500 NaN NaN 288028.6 NaN 14669 3574 18244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18247 76.02 NaN 707500 35 0 175180 0.327 + 9735 HYALNTWLF 9 78 582.7961483207665 1163.577743708333 2 582.7958984375 MULTI HCD FTMS 0 0 0 18246 755830.0625 0.7985378110720476 -4 0.0348052978515625 1 Unmodified _HYALNTWLF_ ENSG00000170881|ENST00000303545|RNF139 47.748688679222035 0.03472022231463587 1 TW{I|L}{M(Oxidation (M))|F} 4 5 52.044 0 0 4.4728 0 0 598.2847767560562 0 598.2847767560562 0 47.43984888652717 0 0 0 1.7134679910804405 0 0.6861818737241735 0 + TW{I|L}{M(Oxidation (M))|F} 4.4728 + + 275 NaN NaN 189101 NaN 14670 3575 18246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18248 76.025 NaN 383690 35 0 47893 0.261 + -1 CYISDVSVL 9 74 528.2559442470814 NaN 0 528.2556762695312 PEAK HCD FTMS 0 0 0 18246 71126.109375 0.18934499300948524 -2 0.0163726806640625 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YISDVSVL_ REV__ENST00000372902.3_1_X:100600658-100600718:-|nuORF 26.88365393820708 0.14119366324382274 1 VS{M(Oxidation (M))|F} 3 -1 30.991 0 0 2.939 0 0 131.09510509610328 587.2140596979124 718.3091647940157 0 0 0 0 0 1.2134679910804405 0 0.805462187404089 0 VS{M(Oxidation (M))|F} 2.939 - 72 + NaN NaN 126339.5 NaN 14671 3575 18246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18250 76.029 NaN 1812400 35 0 179440 0.327 -1 0 110 612.2690474290101 1222.5235419248202 2 612.2692260742188 MULTI HCD FTMS 0 0 0 18249 1241358.125 0.47845299028270977 22 -0.4312896728515625 1 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 32.752 0 0 2.6791 0 0 684.21033594523 0 684.21033594523 0 -1.8495564253589691 -1.8495564253589691 0 0 1.0356668758921828 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.6791 - 967 NaN NaN 354542.1 NaN 14672 3576 18249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18251 76.034 NaN 694870 35 0 78087 0.264 + -1 FFMGCNEHLL 10 76 409.5177003203973 NaN 0 409.18359375 PEAK HCD FTMS 0 0 0 18249 197966.609375 0.6197685611440337 -14 0.14754486083984375 2 Oxidation (M) _FFM(Oxidation (M))GCNEHLL_ REV__ENSG00000120800|ENST00000261637|UTP20 16.565877749689598 0.30845283317438627 1 T 1 -1 5.4846 0 0 0.67129 0 0 521.8809684124759 191.06865869693596 712.9496271094118 0 0 0 0 0 0 0 0 0 T 0.67129 - 13 + NaN NaN 187929.9 NaN 14673 3576 18249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18253 76.039 NaN 1205200 35 0 197130 0.411 + 14302 LDFPMSEKNQ 10 101 403.52690635450125 NaN 0 403.52691650390625 PEAK HCD FTMS 0 0 0 18252 80202.6328125 0.07359292981660294 -2 0.018310546875 1 Unmodified _LDFPMSEKNQ_ FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant 8.155526934196011 0.33320428830121973 1 {I|L} 1 9 5.4846 0 0 0.68128 0 0 114.73399825580539 574.1979046442536 688.9319029000591 0 0 0 0 0 0 0 0 0 + {I|L} 0.68128 + + 33 + NaN NaN 447241.2 NaN 14674 3577 18252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18255 76.046 NaN 1699300 35 0 108480 0.327 + 28361 TPDMQHELI 9 109 550.2592708376053 NaN 0 550.260009765625 PEAK HCD FTMS 0 0 0 18254 837049.5 0.41336760163744635 -1 0.00724029541015625 1 Oxidation (M) _TPDM(Oxidation (M))QHELI_ REV__ENSG00000146090|ENST00000361132|RASGEF1C;REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C 58.678817012210395 0.027870599607392636 1 PQ{M(Oxidation (M))|F}PDST 7 -1 48.91 0 0 4.4525 0 0 101.04757776740242 222.08826624088127 323.1358440082837 0 0 0 0 0 1.5669015600442577 0 1.1382104921644451 0.3054621874040891 PQ{M(Oxidation (M))|F}PDST 4.4525 - 691 + NaN NaN 342029.2 NaN 14675 3578 18254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18256 76.05 NaN 925370 35 0 207310 0.261 + 27682 TAMDVVYAL 9 72 491.7493215224185 981.484090111637 2 491.74945068359375 MULTI HCD FTMS 0 0 0 18254 813146.1875 0.7778905354174915 2 -0.02838134765625 2 Unmodified _TAMDVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 85.35673624503755 0.00464763827098139 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP]VYA 7 5 64.582 0 0 6.58 0 0 0 128.0701671537519 128.0701671537519 45.838989855807135 0 0 0 0 1.4247425010840047 1.5228787452803376 1.610924374808178 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP]VYA 6.58 - 244 NaN NaN 214830.5 NaN 14676 3578 18254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18257 76.054 NaN 603640 35 0 58802 0.261 + -1 YIYKLMALF 9 80 589.320157481225 1176.62576202925 2 589.8202514648438 MULTI HCD FTMS 0 0 0 18254 114697.4140625 0.06895014148398086 -13 0.12348175048828125 3 Oxidation (M) _YIYKLM(Oxidation (M))ALF_ REV__ENSG00000132640|ENST00000378226|BTBD3;REV__nc|ENSG00000132640|Q9Y2F9-2|BTBD3 23.1484247019978 0.1603590852062899 1 YY{I|L}{I|L}{M(Oxidation (M))|F} 5 -1 45.674 0 0 3.8818 0 0 0 474.23915201597873 474.23915201597873 28.664419334782846 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F} 3.8818 - 314 NaN NaN 170451.7 NaN 14677 3578 18254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18258 76.057 NaN 350440 35 0 87896 0.261 + 19117 NFIKQYWQF 9 46 637.3218526416803 1272.6291523501604 2 637.8239135742188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NFIKQYWQF_ ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3 4.3292370932331545 0.3181982124262546 1 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 3 7 12.007 0 0 0.94348 0 0 898.433790075619 0 898.433790075619 0 5.017346757967546 0 0 0 0 0 0 0.3054621874040891 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 0.94348 - 32 + NaN NaN 144787.7 NaN 14678 3578 18254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18260 76.062 NaN 2426100 35 0 216360 0.327 + 6749 FPQKFIDLL 9 119 560.8236929660164 1119.6328329988328 2 560.8236694335938 MULTI HCD FTMS 0 0 0 18259 2474201.75 0.43237617469508954 12 -0.20025634765625 1 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 155.02607137521346 3.513045939247001E-06 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 87.74 0 0 7.8365 7.8365 89.947 0 0 0 26.927716485013278 8.20599238852651 8.20599238852651 8.20599238852651 0 1.9143943297944483 1.3010299956639813 1.5283773187068794 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}V{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}VE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KQ{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L}K{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}V{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}VE{I|L} 7.8365;7.1036;7.0695;7.0141;6.904;6.6953;6.6888;6.3446;6.2811;6.2471 +;-;-;-;-;-;-;-;-;- + 6708 NaN NaN 429914.9 NaN 14679 3579 18259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18261 76.066 NaN 5884400 35 0 1455700 0.261 + -1 KYLAKCWA 8 122 520.2753590773948 NaN 0 520.2658081054688 PEAK HCD FTMS 0 0 0 18259 125329.0234375 0.9999360474360974 1 -0.0126190185546875 2 Carbamidomethyl (C) _KYLAKC(Carbamidomethyl (C))WA_ REV__ENST00000368911.7_1_6:110953234-110953288:-|nuORF 23.1484247019978 0.3827488267290106 1 {I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}N 5 -1 38.045 0 0 3.6633 0 0 128.11325001022857 223.07251917056877 351.18576918079737 0 0 0 0 0 0.7614393726401688 0 0 1.1758337024346173 {I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}N 3.6633 - 739 + NaN NaN 980764.4 NaN 14680 3579 18259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18262 76.07 NaN 1232500 35 0 175190 0.261 + 6783 FPQYVMDVL 9 82 564.2756877720126 1126.536822610825 2 564.777587890625 MULTI HCD FTMS 0 0 0 18259 403885.96875 0.7160057735400173 -1 0.0157623291015625 3 Oxidation (M) _FPQYVM(Oxidation (M))DVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 43.77239144664712 0.04802738721622131 1 [VS]WYV{M(Oxidation (M))|F}DV{I|L} 9 3 + 60.856 0 0 5.4021 5.4021 85.571 0 0 0 4.137342758552691 34.93887181533495 4.137342758552691 7.95880017344075 0 2.004432191740108 0 0 0 [VS]WYV{M(Oxidation (M))|F}DV{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[PA]YV{M(Oxidation (M))|F}DV{I|L};YS{[RE]|[WV]}V{M(Oxidation (M))|F}DV{I|L};[VS]WYVE[MT]{I|L};[VS]WYVE{I|L}[MT];[{M(Oxidation (M))|F}T]{[WT]|[RM]}V{M(Oxidation (M))|F}DV{I|L};Y[TA][W{I|L}]{M(Oxidation (M))|F}DV{I|L};YS{I|L}[MT]WDV{I|L};[Y{I|L}]SEV{[RE]|[WV]}[MT];{[CT]|[{M(Oxidation (M))|F}G]}[PA]YVE[MT]{I|L} 5.4021;4.6956;4.0869;3.0504;2.7832;2.5788;2.5607;2.5323;2.3528;2.3439 -;-;-;-;-;-;-;-;-;- 982 NaN NaN 267315.8 NaN 14681 3579 18259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18264 76.074 NaN 705090 35 0 43369 0.327 -1 MNSTLTFFLL 10 99 601.8082769108884 NaN 0 601.8074340820312 PEAK HCD FTMS 0 0 0 18263 571577.625 0.5531360350213849 23 -0.52520751953125 1 Oxidation (M) _M(Oxidation (M))NSTLTFFLL_ ENST00000392455.7_2_3:191109610-191109739:+|nuORF 32.78568957990786 0.1770653276021985 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N[EP]G 7 -1 34.315 0 0 2.8557 0 0 131.09431951062794 263.10395227603755 394.1982717866655 0 0 0 0 0 2.0021934810768762 0 0.5501648626366046 0.3252574989159953 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N[EP]G 2.8557 - 470 + NaN NaN 194018.1 NaN 14682 3580 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18265 76.079 NaN 760380 35 0 160590 0.264 + 17201 LYMYLNDEY 9 47 408.5147058524207 NaN 0 408.5141296386719 PEAK HCD FTMS 0 0 0 18263 368661.90625 0.9103228112423644 1 -0.01604461669921875 2 Unmodified _LYMYLNDEY_ REV__ENSG00000136531|ENST00000375437|SCN2A;REV__nc|ENSG00000136531|Q99250-2|SCN2A 4.3292370932331545 0.2742679634796037 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.56491 0 0 548.8727516933196 116.05072199039296 664.9234736837126 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.56491 + + 2 + NaN NaN 197014.5 NaN 14683 3580 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18266 76.082 NaN 493260 35 0 33011 0.261 + 19762 NYAWVYYHL 9 86 614.7928837788894 1227.5712146245787 2 615.29443359375 MULTI HCD FTMS 0 0 0 18263 77893.109375 0.18938881297537546 -1 0.0126190185546875 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 60.07390631473393 0.0174780869009295 1 [YN]AWVYN{I|L}W 9 3 + 75.033 0 0 6.1123 6.1123 84.476 0 0 0 5.937040524562249 2.658715643802765 2.658715643802765 2.658715643802765 0 1.774227503252014 1.6989700043360187 0 0 [YN]AWVYN{I|L}W;[YN]AWVYYH{I|L};[YN]AWVYGG{I|L}W;[MT][KA]YV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[VS]V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}NYV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}[SG]WVYYH{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}GGYV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[RK]{M(Oxidation (M))|F}CV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L} 6.1123;5.8957;5.3622;3.5241;3.4811;3.4811;3.2316;2.7344;2.488;1.3618 -;+;-;-;-;-;-;-;-;- + 783 + NaN NaN 155134.5 NaN 14684 3580 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18267 76.086 NaN 160220 35 0 26680 0.264 + 20758 PGKNQRAV 8 56 435.2511149607567 NaN 0 435.2513732910156 PEAK HCD FTMS 0 0 0 18263 47234.74609375 0.2682047298947622 1 -0.01604461669921875 4 Unmodified _PGKNQRAV_ ENSG00000119411|ENST00000374183|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;nc|ENSG00000119411|Q5W0U4-2|BSPRY 2.302733041254933 0.38822285293237185 1 P 1 7 0.3786 0 0 0.043593 0 0 478.270984949054 290.1370943658813 768.4080793149353 0 0 0 0 0 0 0 0 0 + P 0.043593 + + 1 + NaN NaN 103509.2 NaN 14685 3580 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18269 76.09 NaN 74064000 35 0 9160800 0.327 + 13415 KYPENFFLL 9 95 585.8132425088911 1169.6119320845821 2 585.8141479492188 MULTI HCD FTMS 0 0 0 18268 109101272 0.5502972478396924 14 -0.27556610107421875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 125.52916310638031 0.0008761121089336018 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 97.858 0 0 8.3667 8.3667 92.071 0 0 0 11.32068444291761 16.478174818886373 11.32068444291761 9.208187539523749 0 2.4802046884880937 0 0.2742275032520141 2.0471062485323515 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 8.3667;7.5795;7.3988;6.9096;6.6116;6.388;6.2812;6.2605;6.1928;6.1224 +;-;-;-;-;-;-;-;-;- + 9035 NaN NaN 576777.9 NaN 14686 3581 18268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18270 76.095 NaN 7402200 35 0 1018600 0.211 + 11348 IYNGKLFDLL 10 120 598.3396289719675 1194.664705010735 2 598.3396606445312 MULTI HCD FTMS 0 0 0 18268 5088031 0.6443592818071939 -2 0.02866363525390625 2 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 176.4269993864032 3.3074236493791942E-12 1 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 118.77 0 0 9.9414 9.9414 91.572 0 0 0 5.9849293261523115 16.53212513775344 5.9849293261523115 5.9849293261523115 0 2.885151878060192 2 0.2742275032520141 1.6025684359364407 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]GGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}KGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NGK{I|L}D{I|L}{M(Oxidation (M))|F}{I|L} 9.9414;9.4404;9.1742;8.7675;8.6733;8.5968;8.0004;7.9117;7.8297;7.5937 +;+;-;-;-;-;-;-;-;- + 13970 NaN NaN 845262.1 NaN 14687 3581 18268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18271 76.097 NaN 5329900 35 0 1345700 0.261 + 15453 LPDLIKEVL 9 124 520.323451259232 1038.632349585264 2 520.3236083984375 MULTI HCD FTMS 0 0 0 18268 335508.6875 0.48078335923626925 5 -0.0662994384765625 3 Unmodified _LPDLIKEVL_ ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1 30.7034409873982 0.10802119112323902 1 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 7 48.619 0 0 4.6811 0 0 0 125.18654903376377 125.18654903376377 14.019089853900226 0 0 0 0 0 1.3010299956639813 0 1.1663865622122673 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 4.6811 - 2448 NaN NaN 906468.9 NaN 14688 3581 18268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18272 76.101 NaN 287810 35 0 16138 0.261 + 12391 KPGKGARAE 9 80 457.2642199679544 912.5138870027088 2 457.2646179199219 MULTI HCD FTMS 0 0 0 18268 312721.8125 0.4347808594717041 -12 0.12640380859375 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 W 1 9 11.259 0 0 1.2339 0 0 708.4234614429416 0 708.4234614429416 0 5.572697506558873 0 0 0 0 0 0 0 W 1.2339 - 62 + NaN NaN 129004.3 NaN 14689 3581 18268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18274 76.106 NaN 1653000 35 0 751600 0.327 -1 CQTCWQASF 9 75 565.7236041398335 1129.4326553464668 2 565.723876953125 MULTI HCD FTMS 0 0 0 18273 724392.8125 0.586220791723555 -6 0.0759429931640625 1 Carbamidomethyl (C) _CQTC(Carbamidomethyl (C))WQASF_ ENSG00000086102|ENST00000379540|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;nc|ENSG00000086102|Q12986-2|NFX1;nc|ENSG00000086102|Q12986-3|NFX1 7.289230182591677 0.29575926068275815 1 S{M(Oxidation (M))|F} 2 -1 20.445 0 0 1.8102 0 0 877.3215236099419 0 877.3215236099419 0 3.578409410397466 0 0 0 0 0 0.4247425010840047 0 S{M(Oxidation (M))|F} 1.8102 + + 61 + NaN NaN 321982.2 NaN 14690 3582 18273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18275 76.11 NaN 1194300 35 0 521390 0.261 + 17284 LYPQFMFHL 9 71 606.2992298592186 1210.583906785237 2 606.3013305664062 MULTI HCD FTMS 0 0 0 18273 940146.4375 0.058729424243315835 58 -1.367645263671875 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 53.57557251787612 0.02656881086235134 1 [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}] 9 0 + 55.582 0 0 4.5913 4.5913 87.311 0 0 0 50.9163750790475 4.334843577808201 4.334843577808201 12.703037561203843 0 1.0994850021680094 2 0 0.3494850021680094 + + [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]PQ{M(Oxidation (M))|F}{[WN]|[YH]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{[WN]|[YH]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[Y{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[WN]|[YH]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 4.5913;3.542;3.0937;2.333;2.3097 +;-;-;-;- + 253 + NaN NaN 264286 NaN 14691 3582 18273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18276 76.113 NaN 471670 35 0 49973 0.261 + 14800 LINDADWEL 9 67 544.7665371077896 NaN 0 544.7665405273438 PEAK HCD FTMS 0 0 0 18273 215959.125 0.5439793147979595 6 -0.095947265625 3 Unmodified _LINDADWEL_ ENSG00000167118|ENST00000372853|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF;nc|ENSG00000167118|Q9BTM9-2|URM1 38.175570920033316 0.08412639609110066 1 EWD 3 8 26.995 0 0 2.4822 0 0 131.09190759669838 523.2544987449595 654.3464063416579 0 0 0 0 0 1.2059771852360797 0 0.3252574989159953 0 EWD 2.4822 - 100 + NaN NaN 151388.6 NaN 14692 3582 18273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18278 76.118 NaN 13655000 35 0 2563700 0.327 + 28506 TPQFPDMIL 9 79 539.2679517160655 1076.5213504989308 2 539.26806640625 MULTI HCD FTMS 0 0 0 18277 14723471 0.7876443772346547 7 -0.12787628173828125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 99.75527289724121 0.004270341300239591 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 86.481 0 0 8.0334 8.0334 88.48 0 0 0 3.979400086720375 16.478174818886373 3.979400086720375 3.979400086720375 0 1.8494850021680094 0 1.8539171939081172 0.2614393726401688 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L} 8.0334;7.6637;6.8011;6.5655;6.5215 -;+;-;-;- + 1547 NaN NaN 592991.5 NaN 14693 3583 18277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18279 76.123 NaN 1083400 35 0 289140 0.261 + 11660 IYVPDIRNVF 10 77 618.3429766377357 1234.6714003422712 2 618.3421020507812 MULTI HCD FTMS 0 0 0 18277 696324.1875 0.64010930799031 4 -0.0740509033203125 2 Unmodified _IYVPDIRNVF_ ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 37.07464296494664 0.1707926854601146 1 [Y{I|L}]VPD[R{I|L}]NV{M(Oxidation (M))|F} 10 0 + 59.812 0 0 4.8444 4.8444 91.084 0 0 0 6.356603226686701 41.40092514408778 6.356603226686701 59.8122157770505 0 1.8935078169319297 1.6989700043360187 0 0.3252574989159953 + + [Y{I|L}]VPD[R{I|L}]NV{M(Oxidation (M))|F} 4.8444 + + 103 NaN NaN 243193.8 NaN 14694 3583 18277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18281 76.127 NaN 1188800 35 0 163560 0.327 + 4406 EYEGKWLLF 9 108 592.8025974236541 1183.5906419141081 2 592.8026123046875 MULTI HCD FTMS 0 0 0 18280 1283600.75 0.5623475543306234 6 -0.1185455322265625 1 Unmodified _EYEGKWLLF_ ENSG00000162607|ENST00000339950|USP1 34.40172386719151 0.0910440009062557 1 K{M(Oxidation (M))|F}{I|L}{I|L} 4 6 43.267 0 0 3.6556 0 0 664.2464466779312 0 664.2464466779312 0 27.56625672816984 0 0 0 0.9247425010840047 0 0 0.6307196863200843 K{M(Oxidation (M))|F}{I|L}{I|L} 3.6556 - 596 NaN NaN 267191.3 NaN 14695 3584 18280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18282 76.132 NaN 1490300 35 0 370380 0.261 + 6907 FPVEVNTVL 9 49 509.28438533016487 1016.5542177271298 2 509.28448486328125 MULTI HCD FTMS 0 0 0 18280 1437814 0.7272452301867057 -4 0.053070068359375 2 Unmodified _FPVEVNTVL_ ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 36.506200033944 0.08138327636155518 1 NTV{I|L} 4 5 58.686 0 0 5.773 0 0 571.300292468477 0 571.300292468477 0 41.695925227640984 0 0 0 1.5 0 0.8494850021680094 0.3252574989159953 + NTV{I|L} 5.773 + + 95 NaN NaN 306276.9 NaN 14696 3584 18280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18283 76.135 NaN 1063100 35 0 115770 0.261 + 20331 NYQVQFVTL 9 97 556.2925476653705 1110.570542397541 2 556.2930908203125 MULTI HCD FTMS 0 0 0 18280 472197 0.3963458227407169 8 -0.15721893310546875 3 Unmodified _NYQVQFVTL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 134.295615338601 0.00034446139420701925 1 [YN]QVQ{M(Oxidation (M))|F}VT{I|L} 9 0 + 98.188 0 0 8.8412 8.8412 92.757 0 0 0 14.110367599119158 73.93119060902342 14.110367599119158 9.208187539523749 0 2.3494850021680094 1.0457574905606752 0 1.6610892374447828 + + [YN]QVQ{M(Oxidation (M))|F}VT{I|L};[YN][AG]VQ{M(Oxidation (M))|F}VT{I|L};[YN]QV[AG]{M(Oxidation (M))|F}VT{I|L};[YN][AG]V[AG]{M(Oxidation (M))|F}VT{I|L};[{I|L}T]V{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}Q[YN];{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}Q[YN];{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}Q[YN] 8.8412;8.0121;8.0121;7.1869;0.41063;0.25207;0.033228 +;-;-;-;-;-;- + 1172 NaN NaN 246169.5 NaN 14697 3584 18280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18284 76.138 NaN 1153500 35 0 506340 0.261 + 17285 LYPQFMFHL 9 76 606.2992298592186 1210.583906785237 2 606.299560546875 MULTI HCD FTMS 0 0 0 18280 680875.75 0.0425332045984973 60 -1.4432525634765625 4 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 57.47134341890925 0.0211188941628804 1 [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 54.857 0 0 4.5314 0 0 0 412.19941126041255 412.19941126041255 42.09232785116267 0 0 0 0 1.524227503252014 2 0 0.3494850021680094 + [Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5314 + + 110 + NaN NaN 266766 NaN 14698 3584 18280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18285 76.142 NaN 455410 35 0 37376 0.261 + 19763 NYAWVYYHL 9 87 614.7928837788894 1227.5712146245787 2 614.7930297851562 MULTI HCD FTMS 0 0 0 18280 257826.109375 0.8935408744130152 3 -0.06472015380859375 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 78.7280429016045 0.006263961847259105 1 [YN]AWVYYH{I|L} 9 0 + 80.294 0 0 6.5409 6.5409 92.921 0 0 0 2.198565171985379 2.198565171985379 2.198565171985379 31.631680986061724 0 2.742992819099939 1.6989700043360187 0 1.0010912013506126 + + [YN]AWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[MT][KA]YV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RCV{[DS]|[MA]|[CV]|TT}N{M(Oxidation (M))|F}{I|L};[MT][KA]YVCR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RCV{[DS]|[MA]|[CV]|TT}GG{M(Oxidation (M))|F}{I|L} 6.5409;3.9641;2.9095;1.1284;1.1062;0.38185 +;-;-;-;-;- + 437 NaN NaN 155442.2 NaN 14699 3584 18280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18286 76.145 NaN 240190 35 0 45058 0.264 + 31044 VSSSCTLF 8 56 422.1991882324219 NaN 0 422.1991882324219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VSSSCTLF_ ENST00000244745.3_2_6:21594004-21594211:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122129.7 NaN 14700 3584 18280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18288 76.15 NaN 331280 35 0 34909 0.327 + 1218 AYLLYSLHL 9 68 546.8082157772077 1091.6018786212153 2 546.8082885742188 MULTI HCD FTMS 0 0 0 18287 173354.09375 0.5071820445412201 9 -0.20005035400390625 1 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 60.38955033654506 0.017036522530421875 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 68.567 0 0 6.2813 6.2813 93.699 0 0 0 49.10273743745762 8.384767769392738 8.384767769392738 68.56668758921828 0 2.3494850021680094 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 6.2813 + + 95 + NaN NaN 135713 NaN 14701 3585 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18290 76.156 NaN 762790 35 0 199500 0.327 + 9736 HYALNTWLF 9 75 582.7961483207665 1163.577743708333 2 582.7962036132812 MULTI HCD FTMS 0 0 0 18289 359310.25 0.379612871684037 7 -0.1572723388671875 1 Unmodified _HYALNTWLF_ ENSG00000170881|ENST00000303545|RNF139 41.8396318013385 0.056899836730939755 1 RTW{I|L}{M(Oxidation (M))|F} 5 5 58.36 0 0 5.0155 0 0 442.1992359845719 0 442.1992359845719 0 53.75569708000178 0 0 0 1.3807196863200843 0 0.6861818737241735 0.4247425010840047 RTW{I|L}{M(Oxidation (M))|F} 5.0155 - 119 NaN NaN 197556.9 NaN 14702 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18291 76.161 NaN 1147800 35 0 113180 0.261 -1 0 96 612.2690474290101 1222.5235419248202 2 612.2689819335938 MULTI HCD FTMS 0 0 0 18289 445627.8125 0.17175700964116838 32 -0.8705673217773438 2 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 32.535 0 0 2.6613 0 0 684.2084713112226 0 684.2084713112226 0 -1.3148568754962682 -1.3148568754962682 0 0 1.0138793319624577 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.6613 - 148 NaN NaN 266702.9 NaN 14703 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18292 76.164 NaN 1330100 35 0 90826 0.261 + 20332 NYQVQFVTL 9 99 556.2925476653705 1110.570542397541 2 556.8043823242188 MULTI HCD FTMS 0 0 0 18289 106910.734375 0.13047838440286924 7 -0.1572723388671875 3 Unmodified _NYQVQFVTL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 110.6747026088012 0.0028322563155251486 1 [YN]QVQ{M(Oxidation (M))|F}VT{I|L} 9 0 + 84.575 0 0 7.6155 7.6155 90.85 0 0 0 12.834005073602611 34.58195485977133 12.834005073602611 9.208187539523749 0 2.274227503252014 1.0457574905606752 0.28872548999643577 0.9436726795685342 + + [YN]QVQ{M(Oxidation (M))|F}VT{I|L};[YN]QV[AG]{M(Oxidation (M))|F}VT{I|L};[YN][AG]VQ{M(Oxidation (M))|F}VT{I|L};[YN][AG]V[AG]{M(Oxidation (M))|F}VT{I|L};[YG]GQVQ{M(Oxidation (M))|F}VT{I|L};[YG]GQV[AG]{M(Oxidation (M))|F}VT{I|L};[YG]AAAAQ{M(Oxidation (M))|F}VT{I|L};[YN]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}VT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]}{[QN]|[E{I|L}]|[KN]}VT{I|L};[YG]GQVQ{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 7.6155;6.7863;6.7863;5.9611;5.1594;4.3342;4.0155;3.0924;2.6601;2.0428 +;-;-;-;-;-;-;-;-;- + 3067 NaN NaN 280813.2 NaN 14704 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18293 76.167 NaN 1316600 35 0 216770 0.264 + 12053 KISDQSESSDL 11 86 403.52690635450125 NaN 0 403.5268249511719 PEAK HCD FTMS 0 0 0 18289 248904.265625 0.22839143191243005 7 -0.1572723388671875 4 Unmodified _KISDQSESSDL_ ENSG00000085276|ENST00000651503|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112|MECOM 11.494710602746466 0.3095129597915146 1 K 1 10 4.626 0 0 0.57463 0 0 287.78403980022034 386.13559900455317 673.9196388047735 0 0 0 0 0 0 0 0 0.4247425010840047 + K 0.57463 + + 49 + NaN NaN 283075 NaN 14705 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18294 76.171 NaN 1033300 35 0 147790 0.261 + 1055 AYGNVFSAF 9 70 488.2321818155413 974.4498106978826 2 488.2323913574219 MULTI HCD FTMS 0 0 0 18289 229060 0.11363988717373989 -5 0.0662994384765625 5 Unmodified _AYGNVFSAF_ ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 74.92900055777586 0.007493270374442853 1 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 3 + 69.09 0 0 7.0902 7.0902 93.699 0 0 0 12.904849854573683 42.1669877129645 12.904849854573683 27.47039093014969 0 2.25 0 0.3252574989159953 1.3494850021680094 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[HA]{[TV]|[{I|L}S]}SA{M(Oxidation (M))|F};[EP]{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[NP];[RP]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V[Q{I|L}][NP];[RP][C(Carbamidomethyl (C))R][SG]{[QD]|[EN]|[WG]|[KD]|[RS]};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[NP] 7.0902;4.2711;2.217;1.0787;0.54925;0.2981;0.09582 -;-;-;-;-;-;- 290 NaN NaN 233396.6 NaN 14706 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18295 76.174 NaN 480200 35 0 51540 0.261 + 24764 RYNVPFLTF 9 77 578.8116093939109 1155.6086658546217 2 578.81201171875 MULTI HCD FTMS 0 0 0 18289 137696.796875 0.5877659691541077 -2 0.02927398681640625 6 Unmodified _RYNVPFLTF_ ENSG00000168827|ENST00000486715|GFM1;nc|ENSG00000168827|Q96RP9-2|GFM1 52.268347100219714 0.028397529699942435 1 {I|L}[NG]{I|L}M{I|L}T{M(Oxidation (M))|F} 8 5 51.107 0 0 4.4225 0 0 248.1158161847672 0 248.1158161847672 0 40.929862658764264 0 0 0 1.5 0 0 0.4247425010840047 {I|L}[NG]{I|L}M{I|L}T{M(Oxidation (M))|F} 4.4225 - 343 NaN NaN 154687.4 NaN 14707 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18296 76.177 NaN 173560 35 0 21361 0.262 + 18575 MVPWPLVL 8 42 477.77890300939623 NaN 0 477.77880859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _MVPWPLVL_ ENSG00000102934|ENST00000219207|PLLP 17.086550045450526 0.386433553673079 1 V{I|L} 2 6 19.464 0 0 2.0412 0 0 131.09344472508434 607.2760714166624 738.3695161417468 0 0 0 0 0 0.8494850021680094 0 0 0 + V{I|L} 2.0412 + + 13 + NaN NaN 108435.9 NaN 14708 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18297 76.181 NaN 686170 35 0 186520 0.261 + -1 NFIKDLCSFI 10 62 628.8183120698167 NaN 0 628.81884765625 PEAK HCD FTMS 0 0 0 18289 33456.6328125 0.1418379462375948 3 -0.06392669677734375 8 Carbamidomethyl (C) _NFIKDLC(Carbamidomethyl (C))SFI_ REV__ENST00000378746.8_1_5:132032260-132032293:-|nuORF 6.723162845929126 0.3344301934401713 1 {I|L} 1 -1 9.732 0 0 0.77507 0 0 853.4318519541745 286.0832894894866 1139.5151414436612 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.77507 + + 41 + NaN NaN 184606.1 NaN 14709 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18298 76.184 NaN 227930 35 0 16896 0.264 + 673 APRTRKTT 8 71 465.7775000012219 929.5404470692438 2 465.7772521972656 MULTI HCD FTMS 0 0 0 18289 156773.09375 0.44874191873672353 -2 0.02927398681640625 9 Unmodified _APRTRKTT_ ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2 2.302733041254933 0.5385759549224092 1 P 1 7 2.4743 0 0 0.26618 0 0 636.380761865922 193.0797060602172 829.4604679261391 0 0 0 0 0 0 0 0 0 + P 0.26618 + + 40 + NaN NaN 123680.1 NaN 14710 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18299 76.187 NaN 164700 35 0 14413 0.261 -1 ADDIDIEAM 9 57 525.718873421023 NaN 0 525.7186279296875 PEAK HCD FTMS 0 0 0 18289 24293.173828125 0.24530850943145865 1 -0.0354461669921875 10 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADDIDIEAM(Oxidation (M))_ ENSG00000131051|ENST00000253363|RBM39;ENST00000493853.1_1_20:34328703-34329397:-|nuORF;nc|ENSG00000131051|Q14498-2|RBM39;nc|ENSG00000131051|Q14498-3|RBM39 30.636539890814138 0.11600348607007434 1 VN{I|L}{NN|[MP]|[D{I|L}]|[EV]}E 6 -1 24.319 0 0 2.3174 0 0 129.97807779732085 233.06081567935783 363.0388934766787 0 0 0 0 0 1.3807196863200843 0 0.28872548999643577 0 VN{I|L}{NN|[MP]|[D{I|L}]|[EV]}E 2.3174 - 77 + NaN NaN 121097.4 NaN 14711 3586 18289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18301 76.192 NaN 1624000 35 0 104020 0.327 -1 0 98 550.2590133384192 1098.5034737436383 2 550.2590942382812 MULTI HCD FTMS 0 0 0 18300 1560675.25 0.6606031406130919 -1 0.0354461669921875 1 NaN NaN 1 TPQ{M(Oxidation (M))|F}PDST 8 -1 74.294 0 0 6.7632 0 0 0 222.08872400455314 222.08872400455314 22.84969499234562 0 0 0 0 1.305462187404089 1.6989700043360187 0.7742275032520141 0.28872548999643577 TPQ{M(Oxidation (M))|F}PDST 6.7632 - 981 + NaN NaN 349252 NaN 14712 3587 18300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18302 76.197 NaN 650850 35 0 80598 0.261 + 3840 EPHRQFNLL 9 88 577.3117065429688 NaN 0 577.3117065429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _EPHRQFNLL_ REV__ENSG00000128849|ENST00000281282|CGNL1 13.90604991867851 0.22786006501039813 1 {I|L}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}N 6 -1 44.162 0 0 3.8348 0 0 128.09644134293382 223.07178674869377 351.1682280916276 0 0 0 0 0 2.305462187404089 0 0 0.7742275032520141 {I|L}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}N 3.8348 - 448 + NaN NaN 183499.6 NaN 14713 3587 18300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18304 76.201 NaN 1424600 35 0 251750 0.327 + 24629 RYLQDLLAW 9 95 589.320157481225 1176.62576202925 2 589.3209228515625 MULTI HCD FTMS 0 0 0 18303 1156431.375 0.4946373679111003 -5 0.0833587646484375 1 Unmodified _RYLQDLLAW_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant 66.45667989310934 0.010234776021261575 1 [Y{I|L}]RQD{I|L}{I|L}AW 9 2 + 78.517 0 0 6.6731 6.6731 89.864 0 0 0 12.140012553530994 37.80411097140794 12.140012553530994 9.208187539523763 0 2.638210492164445 1.2218487496163564 0.75 0.23965182871044374 [Y{I|L}]RQD{I|L}{I|L}AW;[Y{I|L}]R[AG]D{I|L}{I|L}AW;[Y{I|L}]RQD{I|L}A{I|L}W;{NN|[MP]|[D{I|L}]|[EV]}[NP][HV]{I|L}{I|L}AW;[Y{I|L}]R[PS][TA]{I|L}AW;[Y{I|L}]R[AG]D{I|L}A{I|L}W;{NN|[MP]|[D{I|L}]|[EV]}[NP]{I|L}[HV]{I|L}AW;{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TA]{I|L}AW;[Y{I|L}]RQD{I|L}AW{I|L};YY{I|L}[HV]{I|L}R[DV] 6.6731;5.8905;5.46;5.1158;4.7617;4.6775;4.5629;4.4046;4.0801;4.0647 -;-;-;-;-;-;-;-;-;- 2609 NaN NaN 307203.8 NaN 14714 3588 18303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18305 76.206 NaN 702390 35 0 32175 0.261 + -1 LWCFGFIFL 9 104 601.8082769108884 NaN 0 601.8079223632812 PEAK HCD FTMS 0 0 0 18303 549829.3125 0.5320894180467333 31 -0.8420791625976562 2 Carbamidomethyl (C) _LWC(Carbamidomethyl (C))FGFIFL_ REV__ENSG00000135643|ENST00000258111|KCNMB4 36.466142684027034 0.08960861181303952 1 {I|L}{M(Oxidation (M))|F}[WC(Carbamidomethyl (C))]W 5 -1 27.575 0 0 2.2949 0 0 131.0945568068949 275.1401766412719 406.2347334481668 0 0 0 0 0 1.6861818737241734 0 0 0 {I|L}{M(Oxidation (M))|F}[WC(Carbamidomethyl (C))]W 2.2949 - 496 + NaN NaN 187192.5 NaN 14715 3588 18303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18306 76.209 NaN 800390 35 0 69028 0.261 + 6750 FPQKFIDLL 9 101 560.8236929660164 1119.6328329988328 2 560.823486328125 MULTI HCD FTMS 0 0 0 18303 791430 0.13830540534495003 21 -0.5710830688476562 3 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 99.75527289724121 0.004270341300239591 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 67.239 0 0 6.0054 6.0054 86.512 0 0 0 19.119996000585147 16.478174818886373 16.478174818886373 7.786596949921218 0 1.566901560044258 1.3979400086720375 0.899649864804614 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L}K{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L}KD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]{I|L}K{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[QP]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 6.0054;5.31;5.31;5.183;5.0108;4.5438;4.5438;4.4875;4.4875;4.2977 +;-;-;-;-;-;-;-;-;- + 2193 NaN NaN 210792.9 NaN 14716 3588 18303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18307 76.213 NaN 587670 35 0 103610 0.264 + 26468 STTTHYDYHV 10 59 408.51489631056984 1222.5228595319095 3 408.5154724121094 MULTI HCD FTMS 0 0 0 18303 750660.125 1 0 0 4 Unmodified _STTTHYDYHV_ tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 3.2813086475875832 0.45793521633868084 1 G 1 10 3.4949 0 0 0.28587 0 0 100.05248709089945 1062.4289259194074 1162.4814130103068 0 0 0 0 0 0 0 0 0 G 0.28587 - 17 + NaN NaN 170230.5 NaN 14717 3588 18303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18308 76.216 NaN 379040 35 0 120790 0.261 -1 KKNLEPCHTF 10 56 637.3218526416803 1272.6291523501604 2 637.3226318359375 MULTI HCD FTMS 0 0 0 18303 447588.21875 1 0 0 5 Carbamidomethyl (C) _KKNLEPC(Carbamidomethyl (C))HTF_ ENST00000557320.5_1_14:96999700-97000015:+|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 3 -1 8.9524 0 0 0.70346 0 0 898.4337228422334 0 898.4337228422334 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 0.70346 - 66 + NaN NaN 148824.4 NaN 14718 3588 18303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18310 76.221 NaN 62875000 35 0 7541000 0.327 + 13416 KYPENFFLL 9 100 585.8132425088911 1169.6119320845821 2 585.8140869140625 MULTI HCD FTMS 0 0 0 18309 73127160 0.36884698182375764 22 -0.6042633056640625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.887 0 0 8.1127 8.1127 90.214 0 0 0 7.870156338638594 16.478174818886373 7.870156338638594 7.870156338638594 0 2.555462187404089 0 0.2742275032520141 1.8965912507003613 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.1127;7.4398;7.3254;7.207;6.6526;6.5341;6.4931;6.4388;6.4197;6.332 +;-;-;-;-;-;-;-;-;- + 11915 NaN NaN 551528.2 NaN 14719 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18311 76.225 NaN 2632300 35 0 344210 0.224 + 11349 IYNGKLFDLL 10 120 598.3396289719675 1194.664705010735 2 598.3397827148438 MULTI HCD FTMS 0 0 0 18309 2097055.625 0.26557567287517236 6 -0.1453399658203125 2 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 163.68669969883206 7.320398983075742E-11 1 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 113.25 0 0 9.4794 9.4794 90.099 0 0 0 3.4196937665947047 16.53212513775344 3.4196937665947047 3.4196937665947047 0 2.841129063296272 2 0.2302046884880938 1.2179001828205485 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}VE{I|L};[YN]{I|L}GK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[YQ]VGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[YG]G{I|L}GK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 9.4794;9.1931;8.7123;8.426;8.2669;7.4998;7.1182;6.9874;6.84;6.6345 +;+;-;-;-;-;-;-;-;- + 10863 NaN NaN 409458.8 NaN 14720 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18312 76.228 NaN 1701500 35 0 270410 0.261 + 4393 EYASLIGWKF 10 108 607.3161726223141 1212.617792311428 2 607.3158569335938 MULTI HCD FTMS 0 0 0 18309 401915.9375 0.35122626105239607 -2 0.02848052978515625 3 Unmodified _EYASLIGWKF_ ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF 87.12335221954112 0.0012232043428923125 1 [YE]AVT{I|L}GWK{M(Oxidation (M))|F} 10 2 + 61.11 0 0 5.0395 5.0395 81.605 0 0 0 16.718976386930734 13.927543187566513 13.927543187566513 0.39590623023812554 0 1.9353167406967968 1.0457574905606752 0 0.6861818737241735 [YE]AVT{I|L}GWK{M(Oxidation (M))|F};[YE]AS{I|L}{I|L}GWK{M(Oxidation (M))|F};MV[W{M(Oxidation (M))|F}]{I|L}GWK{M(Oxidation (M))|F};MMQ{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};MVC(Carbamidomethyl (C)){I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}K{[CA]|SS}{I|L}G{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F};MM[AG]{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}K{[CA]|SS}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K{M(Oxidation (M))|F};MV[CG]{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{M(Oxidation (M))|F};[RH]WG{I|L}[C(Carbamidomethyl (C))K]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.0395;5.0068;3.6327;3.2508;3.1478;2.9945;2.4915;2.4523;2.3884;2.0725 -;+;-;-;-;-;-;-;-;- + 3473 + NaN NaN 358374.8 NaN 14721 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18313 76.231 NaN 816290 35 0 163340 0.263 + -1 QQATSCHN 8 83 473.1959183617114 944.3772837902228 2 473.1959228515625 MULTI HCD FTMS 0 0 0 18309 483524.40625 0.5982404067334529 -2 0.02848052978515625 4 Carbamidomethyl (C) _QQATSC(Carbamidomethyl (C))HN_ REV__ENSG00000139151|ENST00000266505|PLCZ1;REV__nc|ENSG00000139151|Q86YW0-2|PLCZ1;REV__nc|ENSG00000139151|Q86YW0-3|PLCZ1 16.942295170755138 0.46913822049235215 1 WE{I|L}Y{I|L} 5 -1 59.518 0 0 6.3023 0 0 0 237.00066553287346 237.00066553287346 48.58919639336095 0 0 0 0 1.1989700043360187 1.3979400086720375 0.3807196863200844 0 WE{I|L}Y{I|L} 6.3023 - 803 + NaN NaN 209707.2 NaN 14722 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18314 76.235 NaN 3569700 35 0 884150 0.261 + 5325 FFLLHFCL 8 117 520.2757528888714 1038.5369528445426 2 520.2757568359375 MULTI HCD FTMS 0 0 0 18309 74645.078125 0.1512401618239672 1 -0.0253448486328125 5 Unmodified _FFLLHFCL_ REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF 24.20995872069341 0.415665547393293 1 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 46.041 0 0 4.4333 0 0 0 125.0912245869546 125.0912245869546 5.490377632461623 0 0 0 0 0.3807196863200844 1.3010299956639813 0 0.9258337024346173 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 4.4333 - 2630 NaN NaN 643726.4 NaN 14723 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18315 76.238 NaN 325790 35 0 49704 0.261 + 27683 TAMDVVYAL 9 59 491.7493215224185 981.484090111637 2 491.7496337890625 MULTI HCD FTMS 0 0 0 18309 222659.109375 0.21300525842691792 12 -0.31513214111328125 6 Unmodified _TAMDVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 28.486842064014134 0.11819662193267319 1 VYA{I|L} 4 5 41.414 0 0 4.2196 0 0 517.2203727209904 0 517.2203727209904 0 18.940162615404077 0 0 0 1.4247425010840047 0 0 0 + VYA{I|L} 4.2196 + + 121 NaN NaN 145162.9 NaN 14724 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18316 76.241 NaN 190550 35 0 18531 0.261 + 20617 PEVLTTPF 8 55 452.2449951171875 NaN 0 452.2449951171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PEVLTTPF_ REV__ENSG00000132874|ENST00000255226|SLC14A2 36.04419817259434 0.34956662917365344 1 RVT 3 -1 9.7814 0 0 1.0838 0 0 183.09026747871252 360.15627572649606 543.2465432052086 0 0 0 0 0 0.5 0 0 0 RVT 1.0838 - 32 + NaN NaN 110863.4 NaN 14725 3589 18309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18318 76.246 NaN 2046800 35 0 281070 0.327 + 35500 YYFSKLIEF 9 112 605.3131340877388 1208.6117152422776 2 605.3140258789062 MULTI HCD FTMS 0 0 0 18317 1157108.25 0.20038163328656178 -6 0.1185455322265625 1 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 100.0907132914201 0.004261551473353346 1 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 97.921 0 0 8.1019 8.1019 93.398 0 0 0 9.18218945128244 9.18218945128244 9.18218945128244 12.984550065040281 0 2.6237125054200234 2 1.0871804965004639 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};YY{M(Oxidation (M))|F}SKE{I|L}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YSK{I|L}{I|L}E{M(Oxidation (M))|F};YY[KA]Y{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SKE{I|L}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}WPY{I|L}{I|L}E{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YSK{I|L}E{I|L}{M(Oxidation (M))|F};YY[KA]Y{I|L}E{I|L}{M(Oxidation (M))|F} 8.1019;7.0276;6.0535;5.9391;5.4551;4.9703;4.965;4.6776;4.3808;4.1028 +;-;-;-;-;-;-;-;-;- + 2762 NaN NaN 403421.1 NaN 14726 3590 18317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18319 76.25 NaN 745770 35 0 91512 0.264 -1 0 59 414.1830006117396 826.3514482902792 2 414.18310546875 MULTI HCD FTMS 0 0 0 18317 672415.125 0.9066752446499198 -1 0.0253448486328125 2 NaN NaN 1 {I|L} 1 -1 14.604 0 0 1.7673 0 0 155.0943998225144 555.1498569010096 710.2442567235239 0 0 0 0 0 0.7614393726401688 0 0 0 {I|L} 1.7673 - 30 + NaN NaN 192406.5 NaN 14727 3590 18317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18320 76.254 NaN 489260 35 0 24431 0.261 + 14104 LAAAAAAAAGR 11 82 457.2642199679544 912.5138870027088 2 457.2642517089844 MULTI HCD FTMS 0 0 0 18317 660047.3125 0.917671637697925 -3 0.05382537841796875 3 Unmodified _LAAAAAAAAGR_ REV__ENSG00000133124|ENST00000372129|IRS4;REV__ENST00000444995.7_1_22:25777521-25801336:-|nuORF;REV__IRS4|p.Y151Ifs*82|1|0.52|ENSG00000133124|chrX:108735895-108735896|-/A|frameshift_variant;REV__nc|ENSG00000133124|O14654|IRS4 3.2813086475875832 0.40452996145431686 1 W 1 -1 11.42 0 0 1.2515 0 0 708.4238734302463 0 708.4238734302463 0 0.8240512432299596 0 0 0 0 0 0 0 W 1.2515 - 85 + NaN NaN 170756.7 NaN 14728 3590 18317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18321 76.257 NaN 1161200 35 0 565710 0.261 -1 YCHECGKSF 9 76 565.7236041398335 1129.4326553464668 2 565.72412109375 MULTI HCD FTMS 0 0 0 18317 491754.375 0.3979562387582662 2 -0.03867340087890625 4 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HECGKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 2.0597508629832335 0.3354026079994024 1 S{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.3235 0 0 877.3218287857231 0 877.3218287857231 0 1.0083376013968586 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.3235 + + 36 + NaN NaN 259890.4 NaN 14729 3590 18317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18323 76.262 NaN 12032000 35 0 2291400 0.327 + 28507 TPQFPDMIL 9 77 539.2679517160655 1076.5213504989308 2 539.2681884765625 MULTI HCD FTMS 0 0 0 18322 17063110 0.9128053194546591 15 -0.425506591796875 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 89.40071534611396 0.0045416704840156395 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 83.497 0 0 7.7562 7.7562 88.916 0 0 0 6.020599913279625 16.478174818886373 6.020599913279625 6.020599913279625 0 1.9247425010840047 0 1.4802046884880937 0.2614393726401688 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{I|L}{[QC]|[C(Carbamidomethyl (C))A]}EPD{M(Oxidation (M))|F}{I|L}{I|L} 7.7562;7.1969;6.7863;6.4166;6.0987;3.5624 -;+;-;-;-;- + 1355 NaN NaN 683274 NaN 14730 3591 18322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18324 76.266 NaN 1578900 35 0 298990 0.261 + 6908 FPVEVNTVL 9 65 509.28438533016487 1016.5542177271298 2 509.2844543457031 MULTI HCD FTMS 0 0 0 18322 1577244 0.7977688183872187 3 -0.087921142578125 2 Unmodified _FPVEVNTVL_ ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 43.77239144664712 0.04802738721622131 1 NTV{I|L} 4 5 51.23 0 0 5.0396 0 0 571.3001391904669 0 571.3001391904669 0 35.74539712336197 0 0 0 1.2059771852360797 0 0.8494850021680094 0.3252574989159953 + NTV{I|L} 5.0396 + + 235 NaN NaN 330337.8 NaN 14731 3591 18322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18325 76.27 NaN 1073700 35 0 87074 0.261 + 21338 PSWAYSTLLF 10 112 592.8025974236541 1183.5906419141081 2 592.8026123046875 MULTI HCD FTMS 0 0 0 18322 1305221.75 0.5718197492262578 13 -0.37035369873046875 3 Unmodified _PSWAYSTLLF_ ENST00000409185.5_1_2:131806791-131806905:-|nuORF 32.30548876998284 0.21217886106551395 1 S[R{I|L}]C(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 7 6 50.868 0 0 4.2978 0 0 276.1109171322605 0 276.1109171322605 0 22.94847127946943 0 0 0 2.1549471895720984 0 0.7134679910804405 0 S[R{I|L}]C(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 4.2978 - 1990 NaN NaN 250238.1 NaN 14732 3591 18322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18326 76.273 NaN 449380 35 0 70098 0.261 + 15583 LPDVSLQEF 9 66 524.271329482237 1046.5281060312739 2 524.27197265625 MULTI HCD FTMS 0 0 0 18322 290399.84375 0.4967099256944471 -5 0.10529327392578125 4 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 70.33199760932243 0.0089807860198535 1 PS{I|L}QE{M(Oxidation (M))|F} 6 3 61.279 0 0 5.8555 0 0 327.1949894314676 0 327.1949894314676 0 48.6032911501178 0 0 0 2 0 0.8807196863200843 0.6861818737241735 PS{I|L}QE{M(Oxidation (M))|F} 5.8555 - 236 + NaN NaN 153061.7 NaN 14733 3591 18322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18327 76.277 NaN 363990 35 0 56191 0.261 + 17087 LYLDKATLIW 10 74 618.3556977364284 NaN 0 618.3427124023438 PEAK HCD FTMS 0 0 0 18322 69276.6171875 0.45170783775696677 2 -0.05197906494140625 5 Unmodified _LYLDKATLIW_ chrX:109535977-109536937|142|21.89|0.39|5.8|+|ENST00000218004|NXT2,NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;nc|ENSG00000101888|Q9NPJ8-4|NXT2 26.268140514670165 0.2298602997689256 1 {I|L} 1 9 12.857 0 0 1.0413 0 0 845.4652579222724 273.1245904722994 1118.5898483945718 0 0 0 0 0 0.8252574989159953 0 0 0 + {I|L} 1.0413 + + 20 + NaN NaN 150511.5 NaN 14734 3591 18322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18328 76.28 NaN 159880 35 0 11179 0.263 + 34860 YSCQNCEI 8 72 480.18545502737555 NaN 0 480.1849670410156 PEAK HCD FTMS 0 0 0 18322 158061.28125 1 0 0 6 Unmodified _YSCQNCEI_ REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 11.640296217721598 0.38822285293237185 1 {I|L}Y 2 -1 16.326 0 0 1.7035 0 0 315.1212736817634 364.06284509830317 679.1841187800666 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}Y 1.7035 - 12 + NaN NaN 105726.7 NaN 14735 3591 18322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18330 76.285 NaN 453620 35 0 200710 0.327 -1 SSCCMFFF 8 46 514.6878416432048 1027.3611303532095 2 514.6878662109375 MULTI HCD FTMS 0 0 0 18329 116868.9609375 0.29965617484671475 1 -0.029327392578125 1 Carbamidomethyl (C) _SSC(Carbamidomethyl (C))CMFFF_ ENST00000497194.6_1_11:71713256-71713580:+|nuORF 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 19.732 0 0 1.9206 0 0 862.2822556967627 0 862.2822556967627 0 19.247425010840047 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.9206 + + 5 + NaN NaN 161726.2 NaN 14736 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18331 76.289 NaN 466290 35 0 57996 0.261 + 7213 FSQEERMA 8 80 499.2228557403748 996.4311585475497 2 499.22308349609375 MULTI HCD FTMS 0 0 0 18329 138429.78125 0.45221107817624023 1 -0.029327392578125 2 Unmodified _FSQEERMA_ ENSG00000172006|ENST00000317243|ZNF554 20.453626601364224 0.4433031943603284 1 AYQ 3 7 47.792 0 0 4.7963 0 0 0 631.2515352838499 631.2515352838499 16.677353201839438 0 0 0 0 0.4247425010840047 2 0 0.2742275032520141 AYQ 4.7963 - 210 + NaN NaN 162951.1 NaN 14737 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18332 76.293 NaN 424730 35 0 79382 0.261 -1 YILTCEHDVL 10 56 631.8080209296728 1261.6014889261455 2 631.8070068359375 MULTI HCD FTMS 0 0 0 18329 134120.40625 0.49815356515832704 1 -0.029327392578125 3 Carbamidomethyl (C) _YILTC(Carbamidomethyl (C))EHDVL_ ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 6.723162845929126 0.4397169348982109 1 A[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[NP]V{I|L} 8 -1 27.396 0 0 2.1715 0 0 269.1027088849625 0 269.1027088849625 0 16.91122510072759 0 0 0 0.5 0 0 0 A[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[NP]V{I|L} 2.1715 - 45 NaN NaN 154524.1 NaN 14738 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18333 76.296 NaN 548670 35 0 67646 0.262 -1 CLVPGPGPCD 10 74 536.2322591885244 1070.4499654438487 2 536.2318115234375 MULTI HCD FTMS 0 0 0 18329 85071.734375 0.45752992424264705 1 -0.029327392578125 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LVPGPGPC(Carbamidomethyl (C))D_ ENSG00000090932|ENST00000356433|DLL3;ENST00000600437.1_1_19:39989581-39996225:+|nuORF;nc|ENSG00000090932|Q9NYJ7|DLL3 10.823927491677226 0.4098686510432541 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4465 0 0 905.3706940588862 0 905.3706940588862 0 4.766128101111843 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4465 - 49 + NaN NaN 163987.6 NaN 14739 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18334 76.299 NaN 480050 35 0 112620 0.261 + 10570 IPLEEGELEL 10 64 571.3032664697377 1140.5919800062752 2 571.3031616210938 MULTI HCD FTMS 0 0 0 18329 282212.25 0.19441817744831535 -4 0.08319091796875 5 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 53.832793166522166 0.06385051108671999 1 EEW{I|L}E{I|L} 6 5 59.686 0 0 5.2329 0 0 323.2208729474625 0 323.2208729474625 0 49.2279848331593 0 0 0 1.774227503252014 0 0.3807196863200844 0 EEW{I|L}E{I|L} 5.2329 - 327 NaN NaN 174071.7 NaN 14740 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18335 76.303 NaN 178440 35 0 30097 0.262 + 16676 LWQIYTHNHEL 11 37 485.24542750838384 1452.7144531253516 3 485.57977294921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LWQIYTHNHEL_ REV__ENSG00000119900|ENST00000370435|OGFRL1 2.2527281973983926 0.4090409658946738 1 E[WQ][PA]{I|L} 6 -1 17.676 0 0 1.2168 0 0 710.393358299025 0 710.393358299025 0 10.686362358410125 0 0 0 0.5 0 0 0 E[WQ][PA]{I|L} 1.2168 - 10 NaN NaN 106984.7 NaN 14741 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18336 76.306 NaN 291030 35 0 18061 0.261 -1 QYQIIMTMI 9 65 578.7912559509707 1155.5679589687413 2 578.790771484375 MULTI HCD FTMS 0 0 0 18329 92070.6328125 0.5019716748400235 -1 0.02265167236328125 7 Oxidation (M) _QYQIIMTM(Oxidation (M))I_ ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2 32.78568957990786 0.09846250359632436 1 {I|L}M{I|L}T{M(Oxidation (M))|F} 5 -1 45.701 0 0 3.9549 0 0 532.2740070694326 0 532.2740070694326 0 25.440228147639203 0 0 0 0.9247425010840047 0 0 0 {I|L}M{I|L}T{M(Oxidation (M))|F} 3.9549 - 124 NaN NaN 126585.8 NaN 14742 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18337 76.309 NaN 200400 35 0 19329 0.261 + 1219 AYLLYSLHL 9 56 546.8082157772077 1091.6018786212153 2 546.8087768554688 MULTI HCD FTMS 0 0 0 18329 94352.09375 0.276045905693357 15 -0.43561553955078125 8 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 67.34385681178166 0.00994769994983633 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 77.77 0 0 7.1244 7.1244 95.454 0 0 0 0.6246936830414995 0.6246936830414995 0.6246936830414995 77.76979068265724 0 2.6677353201839438 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 7.1244 + + 83 NaN NaN 110055.1 NaN 14743 3592 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18339 76.314 NaN 689330 35 0 67623 0.327 + 26905 SYLDNFIKI 9 89 556.8031320948323 1111.5917112564646 2 556.80322265625 MULTI HCD FTMS 0 0 0 18338 349601.15625 0.30097668051842114 2 -0.05199432373046875 1 Unmodified _SYLDNFIKI_ ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4 107.09958533191995 0.0034159042678574016 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DN{M(Oxidation (M))|F}{I|L}K{I|L} 9 0 + 73.034 0 0 6.5703 6.5703 91.725 0 0 0 4.7620364415941765 53.34175931466568 4.7620364415941765 17.703037561203836 0 2.6989700043360187 0 0.6747425010840047 1.1549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DN{M(Oxidation (M))|F}{I|L}K{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DGG{M(Oxidation (M))|F}{I|L}K{I|L} 6.5703;4.9777 +;- + 1120 NaN NaN 201830.2 NaN 14744 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18340 76.318 NaN 1329700 35 0 263670 0.261 + 1056 AYGNVFSAF 9 80 488.2321818155413 974.4498106978826 2 488.23223876953125 MULTI HCD FTMS 0 0 0 18338 718525.4375 0.3564705738625779 2 -0.05199432373046875 2 Unmodified _AYGNVFSAF_ ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 99.79894945604345 0.0042691968066200965 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[NG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 0 + 85.128 0 0 8.736 8.736 93.44 0 0 0 12.98332479720628 16.478174818886373 12.98332479720628 9.489700043360187 0 2.8494850021680094 1.0457574905606752 0.3807196863200844 1.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[NG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QA]{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[SA]|[TG]}{M(Oxidation (M))|F}[QA]{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{[QV]|[N{I|L}]|[RA]|[KV]}SA{M(Oxidation (M))|F};[EP]N[KT][NG]{[ES]|[DT]|[{I|L}C]};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QV]|[N{I|L}]|[RA]|[KV]}V[NG]{[ES]|[DT]|[{I|L}C]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PE[RN]{[ES]|[DT]|[{I|L}C]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PY[HV]{[ES]|[DT]|[{I|L}C]};{[QD]|[EN]|[WG]|[KD]|[RS]}P[KT][NG]{[ES]|[DT]|[{I|L}C]} 8.736;7.7622;7.4037;6.558;4.9141;2.1603;1.2086;1.0625;0.83079;0.76011 +;-;-;-;-;-;-;-;-;- + 495 NaN NaN 282366.6 NaN 14745 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18341 76.322 NaN 730140 35 0 65681 0.261 + 5074 FEDEEEAELL 10 99 612.2690474290101 1222.5235419248202 2 612.268798828125 MULTI HCD FTMS 0 0 0 18338 183399.78125 0.07068723520559979 39 -0.9982757568359375 3 Unmodified _FEDEEEAELL_ REV__ENSG00000163159|ENST00000368892|VPS72;REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF;REV__nc|ENSG00000163159|Q15906-2|VPS72 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 24.169 0 0 1.977 0 0 831.2780628888687 0 831.2780628888687 0 9.395198790502803 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 1.977 - 193 NaN NaN 195745.7 NaN 14746 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18342 76.325 NaN 528300 35 0 33851 0.261 + 19764 NYAWVYYHL 9 85 614.7928837788894 1227.5712146245787 2 614.7936401367188 MULTI HCD FTMS 0 0 0 18338 209059.9375 0.7245332903301129 12 -0.3511505126953125 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.0072241045649327805 1 [YN]AWVYYH{I|L} 9 0 + 91.424 0 0 7.4476 7.4476 87.444 0 0 0 13.465036852608009 13.465036852608009 13.465036852608009 3.6345413438177587 0 2.7302046884880937 1.6989700043360187 0 0.6989700043360187 + + [YN]AWVYYH{I|L};[YN]AWVYHY{I|L};[YN]AWVG{[QD]|[EN]|[WG]|[KD]|[RS]}Y{I|L};[YN]AWV[WD]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YN]AWVG[QP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};[YN]A[VS]V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[PS]Q[QP]GVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[MT][KA]YV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[PS][AG][QP]GVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.4476;7.1515;5.9442;5.0832;4.6525;4.6026;4.6026;3.559;3.3678;2.8153 +;-;-;-;-;-;-;-;-;- + 1040 NaN NaN 162498.7 NaN 14747 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18343 76.329 NaN 476590 35 0 44222 0.261 + 6625 FPLSESQTLL 10 80 567.8057107268437 1133.5968685204873 2 567.80517578125 MULTI HCD FTMS 0 0 0 18338 216742.96875 1 0 0 5 Unmodified _FPLSESQTLL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 29.84058131909904 0.23356904650364865 1 T{I|L}{I|L} 3 7 37.039 0 0 3.2674 0 0 788.3729115216812 0 788.3729115216812 0 17.117581349478638 0 0 0 0.7614393726401688 0 0.7742275032520141 0 + T{I|L}{I|L} 3.2674 + + 74 NaN NaN 156699.8 NaN 14748 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18344 76.332 NaN 424740 35 0 92633 0.261 + -1 EYFYCGIVVL 10 52 631.8080209296728 1261.6014889261455 2 631.8086547851562 MULTI HCD FTMS 0 0 0 18338 42993.3203125 0.15968692901022133 2 -0.05199432373046875 6 Carbamidomethyl (C) _EYFYC(Carbamidomethyl (C))GIVVL_ REV__ENSG00000104290|ENST00000240093|FZD3;REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant 6.2057823575117 0.44245551207394906 1 VV{I|L} 3 -1 29.693 0 0 2.3536 0 0 932.3751087873062 0 932.3751087873062 0 24.20818753952375 0 0 0 0.5 0 0 0 VV{I|L} 2.3536 + + 19 NaN NaN 158125.4 NaN 14749 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18345 76.335 NaN 339660 35 0 25390 0.262 + 22915 QYRLFVLF 8 69 543.3110007937669 1084.6074486543337 2 543.7438354492188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _QYRLFVLF_ REV__ENSG00000162976|ENST00000295083|SLC66A3;REV__ENST00000496444.1_1_2:11300571-11300830:+|nuORF;REV__nc|ENSG00000162976|Q8N755-2|SLC66A3 14.581692164780916 0.48650662947107914 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5 -1 34.297 0 0 3.1621 0 0 383.29853255715176 0 383.29853255715176 0 13.239087409443187 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 3.1621 - 112 + NaN NaN 138236.2 NaN 14750 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18346 76.339 NaN 603540 35 0 79917 0.261 + 3858 EPITVEVAF 9 89 502.7678925467958 1003.5212321603916 2 502.767822265625 MULTI HCD FTMS 0 0 0 18338 94344.6484375 0.7662442422775739 1 -0.03594207763671875 8 Unmodified _EPITVEVAF_ ENSG00000153339|ENST00000283351|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 42.09456458481378 0.05572955244001856 1 EVA{M(Oxidation (M))|F} 4 5 46.151 0 0 4.5989 0 0 539.2933827130875 0 539.2933827130875 0 36.27426910580333 0 0 0 1.5189301784845295 0 0.6549471895720984 0 + EVA{M(Oxidation (M))|F} 4.5989 + + 589 NaN NaN 184251 NaN 14751 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18347 76.342 NaN 284520 35 0 43094 0.261 + 8211 GRDFSQSSHLL 11 63 623.8141343879787 1245.6137158427573 2 623.8135986328125 MULTI HCD FTMS 0 0 0 18338 104959.5546875 0.6960608189534133 -1 0.029327392578125 9 Unmodified _GRDFSQSSHLL_ ENSG00000131849|ENST00000254166|ZNF132;nc|ENSG00000131849|P52740-2|ZNF132 9.5439744041441 0.373925449867384 1 {I|L}{I|L}{I|L} 3 9 28.812 0 0 2.3131 0 0 888.3454457013687 0 888.3454457013687 0 18.362336565340414 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 2.3131 - 80 NaN NaN 132015.5 NaN 14752 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18348 76.345 NaN 616470 35 0 82474 0.264 + 29934 VFEWETPVVC 10 76 403.52690635450125 NaN 0 403.5269775390625 PEAK HCD FTMS 0 0 0 18338 121747.203125 0.11171370640527659 14 -0.40628814697265625 10 Unmodified _VFEWETPVVC_ ENSG00000197081|ENST00000356956|IGF2R 6.723162845929126 0.3344301934401713 1 {M(Oxidation (M))|F} 1 9 5.4846 0 0 0.68128 0 0 170.83334044162126 484.1370028131469 654.9703432547682 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.68128 + + 13 + NaN NaN 200033.8 NaN 14753 3593 18338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18350 76.35 NaN 1166900 35 0 73904 0.327 -1 0 98 550.2590133384192 1098.5034737436383 2 550.259033203125 MULTI HCD FTMS 0 0 0 18349 802442.75 0.33965823499296616 6 -0.1630859375 1 NaN NaN 1 TPQ{M(Oxidation (M))|F}PDST 8 -1 67.834 0 0 6.1751 0 0 0 222.08828149967033 222.08828149967033 17.115487929765436 0 0 0 0 1.305462187404089 1.2218487496163564 0.8494850021680094 0.2742275032520141 TPQ{M(Oxidation (M))|F}PDST 6.1751 - 816 + NaN NaN 272357.8 NaN 14754 3594 18349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18351 76.354 NaN 675810 35 0 31012 0.261 -1 VCISYSTLLF 10 97 601.8082769108884 NaN 0 601.8081665039062 PEAK HCD FTMS 0 0 0 18349 487257.53125 0.47153647567980556 37 -0.955078125 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))ISYSTLLF_ ENST00000478436.1_1_3:145794517-145794673:-|nuORF 36.12702656103203 0.15814681568024677 1 {I|L}{M(Oxidation (M))|F}K[DC]W 6 -1 32.026 0 0 2.6652 0 0 131.09277534612357 275.1397799127563 406.23255525887987 0 0 0 0 0 1.7302046884880937 0 0.2302046884880938 0.25 {I|L}{M(Oxidation (M))|F}K[DC]W 2.6652 - 652 + NaN NaN 182069.6 NaN 14755 3594 18349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18352 76.358 NaN 291430 35 0 22139 0.263 + 14109 LAAARSRSV 9 78 465.7775000012219 929.5404470692438 2 465.7777404785156 MULTI HCD FTMS 0 0 0 18349 292543.5 0.8373664661698793 6 -0.1630859375 3 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 3.5964929083625545 0.32375295897743744 1 [RH]PG 4 -1 3.2315 0 0 0.34764 0 0 0 479.26838831363756 479.26838831363756 0.4672474044927464 0 0 0 0 0 0 0 0 [RH]PG 0.34764 - 29 NaN NaN 122830.5 NaN 14756 3594 18349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18353 76.361 NaN 632940 35 0 86468 0.261 + 5971 FPDQVAIQL 9 77 515.7819977459875 1029.549442558775 2 516.2835083007812 MULTI HCD FTMS 0 0 0 18349 39045.0859375 0.020563462889798753 -14 0.2755584716796875 4 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 49.55428908609986 0.03219431099695407 1 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 7 5 55.354 0 0 5.3765 0 0 242.12654311347814 0 242.12654311347814 0 35.89017289158441 0 0 0 1.805462187404089 0 0 0 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 5.3765 - 427 NaN NaN 173562.8 NaN 14757 3594 18349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18355 76.366 NaN 31928000 35 0 3477100 0.326 + 13417 KYPENFFLL 9 108 585.8132425088911 1169.6119320845821 2 585.8140258789062 MULTI HCD FTMS 0 0 0 18354 38950608 0.1964634508026882 28 -0.795318603515625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 89.89 0 0 7.6854 7.6854 88.626 0 0 0 5.566438479274126 7.447026752325158 5.566438479274126 5.566438479274126 0 2.6307196863200843 0 0.3054621874040891 1.6705363776671327 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]S[PA]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]S[PA]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YV]S[PA]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 7.6854;7.2095;7.0487;7.0045;6.926;6.8981;6.5728;6.4501;6.3678;6.2614 +;-;-;-;-;-;-;-;-;- + 10219 NaN NaN 514846 NaN 14758 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18356 76.37 NaN 1131600 35 0 128890 0.261 + 11350 IYNGKLFDLL 10 111 598.3396289719675 1194.664705010735 2 598.339599609375 MULTI HCD FTMS 0 0 0 18354 809931.5 0.10257148190587347 12 -0.3542938232421875 2 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 139.78183599554657 4.535006195463608E-07 1 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 108.34 0 0 9.0683 9.0683 89.179 0 0 0 2.1983169753436016 16.53212513775344 2.1983169753436016 2.1983169753436016 0 2.860924374808178 2 0 1.159097005026964 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[YQ]VGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}VE{I|L};[YG]AVGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}D{I|L}{M(Oxidation (M))|F}{I|L} 9.0683;8.8843;8.1172;8.092;7.9581;7.191;6.7237;6.6192;6.4135;6.3337 +;+;-;-;-;-;-;-;-;- + 5267 NaN NaN 257142.4 NaN 14759 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18357 76.374 NaN 632300 35 0 101360 0.263 + 26710 SYCYPPLC 8 87 473.1959183617114 944.3772837902228 2 473.19580078125 MULTI HCD FTMS 0 0 0 18354 542412.3125 0.6710994486583536 4 -0.11093902587890625 3 Unmodified _SYCYPPLC_ REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF 28.173230860318316 0.38285857429842723 1 WE{I|L}Y{I|L} 5 -1 59.457 0 0 6.2959 0 0 0 237.00123010806877 237.00123010806877 47.11494743906186 0 0 0 0 1.2302046884880937 1.3979400086720375 0.4247425010840047 0 WE{I|L}Y{I|L} 6.2959 - 494 + NaN NaN 194229.1 NaN 14760 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18358 76.377 NaN 935910 35 0 87744 0.261 + 25881 SMTRYFYLF 9 92 614.2962758909922 1226.5779988487843 2 614.2973022460938 MULTI HCD FTMS 0 0 0 18354 293246.09375 0.24296585828522024 -3 0.08132171630859375 4 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 49.55428908609986 0.03219431099695407 1 [YN]A{[RE]|[WV]}{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F} 10 7 + 47.202 0 0 3.8482 3.8482 79.956 0 0 0 0.7846345946782662 2.0452080928579477 0.7846345946782662 0.5115252244738144 0 0.5 1.3979400086720375 0.805462187404089 0.3054621874040891 [YN]A{[RE]|[WV]}{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]A{[RE]|[WV]}[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}][WH]{[DA]|[EG]}Y{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F};E{M(Oxidation (M))|F}AWV{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};[YN][RP]V[MT]S{I|L}{M(Oxidation (M))|F};[Y{I|L}][WQ]DRS{I|L}{M(Oxidation (M))|F};E{M(Oxidation (M))|F}AWV{[DS]|[MA]|[CV]|TT}GG{I|L}{M(Oxidation (M))|F};E{M(Oxidation (M))|F}A{[DA]|[EG]}V{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};E{M(Oxidation (M))|F}AWVYY[H{I|L}] 3.8482;3.8065;3.7843;3.716;3.4787;3.2138;3.1126;2.7315;2.7315;2.7029 -;-;-;-;-;-;-;-;-;- 1885 NaN NaN 234995.4 NaN 14761 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18359 76.381 NaN 795710 35 0 99582 0.261 + 26756 SYFPKILTF 9 78 558.31024426249 1114.6059355917798 2 558.3106079101562 MULTI HCD FTMS 0 0 0 18354 260356.75 0.6307894051447919 -1 0.01605224609375 5 Unmodified _SYFPKILTF_ ENSG00000138821|ENST00000356736|SLC39A8;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8 47.594388314883695 0.03493607795751234 1 MT{M(Oxidation (M))|F} 3 7 36.995 0 0 3.3191 0 0 717.4429469421582 0 717.4429469421582 0 16.660006443871893 0 0 0 1.3807196863200843 0 0 0 MT{M(Oxidation (M))|F} 3.3191 - 195 NaN NaN 215017.3 NaN 14762 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18360 76.384 NaN 481910 35 0 32023 0.261 + 6853 FPTGTLESIR 10 83 560.8055795759311 NaN 0 560.82373046875 PEAK HCD FTMS 0 0 0 18354 54892.23828125 0.8989090908625685 -1 0.01605224609375 6 Unmodified _FPTGTLESIR_ REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 21.536976647645854 0.26818477760186155 1 {I|L}D[SG]{I|L}K{I|L}P 8 -1 19.663 0 0 1.7563 0 0 131.05859478830104 162.0220888727172 293.08068366101827 0 0 0 0 0 0.3054621874040891 0 0.28872548999643577 0.4247425010840047 {I|L}D[SG]{I|L}K{I|L}P 1.7563 - 230 + NaN NaN 163615.6 NaN 14763 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18361 76.387 NaN 418960 35 0 87912 0.261 + 26620 SWLETYFI 8 58 529.7632221293152 1057.5118913254303 2 529.7635498046875 MULTI HCD FTMS 0 0 0 18354 172603.53125 0.5143079476886366 -1 0.01605224609375 7 Unmodified _SWLETYFI_ tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 13.50788311687929 0.4944073034352369 1 Y{M(Oxidation (M))|F}{I|L} 3 5 34.45 0 0 3.2577 0 0 616.2877064435562 0 616.2877064435562 0 23.02378753635658 0 0 0 0.8252574989159953 0 0 0 + Y{M(Oxidation (M))|F}{I|L} 3.2577 + + 150 NaN NaN 151178.1 NaN 14764 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18362 76.391 NaN 220660 35 0 40069 0.262 + 21427 PVSSYGSF 8 45 422.19824793462055 842.3819429360411 2 422.1989440917969 MULTI HCD FTMS 0 0 0 18354 59263.3046875 0.44537961908629137 -29 0.43103790283203125 8 Unmodified _PVSSYGSF_ REV__ENSG00000136840|ENST00000335791|ST6GALNAC4;REV__ENST00000467674.5_1_9:130672274-130679146:-|nuORF;REV__ENST00000495983.1_1_9:130672770-130677033:-|nuORF 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 2.0169 0 0 677.3032971614302 0 677.3032971614302 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.0169 + + 11 + NaN NaN 123450.3 NaN 14765 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18363 76.394 NaN 281050 35 0 40454 0.261 + 8748 HHPSCPTELLL 11 59 623.8141343879787 1245.6137158427573 2 624.3147583007812 MULTI HCD FTMS 0 0 0 18354 110087.9453125 0.7563492512488311 -1 0.01605224609375 9 Unmodified _HHPSCPTELLL_ ENST00000544907.6_1_17:26671671-26671929:+|nuORF 8.155526934196011 0.3831532958467648 1 {I|L}{I|L}{I|L} 3 8 28.812 0 0 2.3131 0 0 888.3477650373062 0 888.3477650373062 0 7.64136888583522 0 0 0 0.5 0 0 0 + {I|L}{I|L}{I|L} 2.3131 + + 50 NaN NaN 123933.8 NaN 14766 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18364 76.397 NaN 211290 35 0 25257 0.262 + 8314 GYAHWIGLF 9 68 532.271433708557 1062.5283144839138 2 532.2721557617188 MULTI HCD FTMS 0 0 0 18354 72570.25 0.7711339788538594 3 -0.09488677978515625 10 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 20.871210003555333 0.18003371494288972 1 G{I|L}{M(Oxidation (M))|F} 3 6 35.005 0 0 3.2945 0 0 727.3451478076855 0 727.3451478076855 0 18.807196863200843 0 0 0 0.8807196863200843 0 0 0 + G{I|L}{M(Oxidation (M))|F} 3.2945 + + 42 NaN NaN 113793 NaN 14767 3595 18354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18366 76.402 NaN 5689200 35 0 1005100 0.327 + 35501 YYFSKLIEF 9 109 605.3131340877388 1208.6117152422776 2 605.3134155273438 MULTI HCD FTMS 0 0 0 18365 5774522.5 1 0 0 1 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 133.0521902211835 0.0004198702180815479 1 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 109.43 0 0 9.0546 9.0546 91.338 0 0 0 15.568109453757657 15.568109453757657 15.568109453757657 7.015449934959719 0 2.6237125054200234 2 1.7614393726401687 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};YY{M(Oxidation (M))|F}SKE{I|L}{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SKE{I|L}{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]YSK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}S{I|L}{I|L}KE{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YSK{I|L}E{I|L}{M(Oxidation (M))|F};YY[KA]Y{I|L}{I|L}E{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YSK{I|L}E{M(Oxidation (M))|F}{I|L} 9.0546;8.4741;7.661;7.508;6.6948;6.5359;6.0409;5.9555;5.45;5.1423 +;-;-;-;-;-;-;-;-;- + 3875 NaN NaN 648176.1 NaN 14768 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18367 76.407 NaN 508680 35 0 25882 0.263 + 21140 PPLMIPVF 8 86 457.2642199679544 912.5138870027088 2 457.26434326171875 MULTI HCD FTMS 0 0 0 18365 549428.375 0.7638768117610655 3 -0.0748443603515625 2 Unmodified _PPLMIPVF_ ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-5|SOX5 6.354104778181461 0.5325651638111438 1 W 1 8 10.969 0 0 1.2021 0 0 708.4241786060276 0 708.4241786060276 0 2.7313630190140152 0 0 0 0 0 0 0 W 1.2021 - 118 + NaN NaN 163832.9 NaN 14769 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18368 76.41 NaN 770110 35 0 339150 0.261 -1 YCHECGKSF 9 62 565.7236041398335 1129.4326553464668 2 565.723876953125 MULTI HCD FTMS 0 0 0 18365 393741.3125 0.31863836852746474 8 -0.23028564453125 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HECGKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 2.0597508629832335 0.3354026079994024 1 S{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.5901 0 0 877.3220166630906 0 877.3220166630906 0 8.138181262758266 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.5901 + + 41 + NaN NaN 209491.5 NaN 14770 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18369 76.413 NaN 568570 35 0 45619 0.261 + 24218 RYFLPPYTF 9 92 602.3116138496628 1202.6086747661254 2 602.3114013671875 MULTI HCD FTMS 0 0 0 18365 364723.15625 0.5687178367172391 6 -0.16473388671875 4 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 24.253 0 0 2.0167 0 0 579.3172088954678 0 579.3172088954678 0 11.797889378640754 0 0 0 0.805462187404089 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.0167 + + 1200 NaN NaN 170144.8 NaN 14771 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18370 76.417 NaN 1467100 35 0 163500 0.261 + 17106 LYLGLFNRL 9 77 554.8292679378519 1107.6439829425037 2 555.3310546875 MULTI HCD FTMS 0 0 0 18365 652649.75 0.659567000136873 -2 0.05214691162109375 5 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 100.37149154755038 0.004254194004462789 1 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 10 2 + 94.946 0 0 8.5719 8.5719 89.143 0 0 0 21.84447197927419 5.366297160387816 5.366297160387816 3.521825181113627 0 2.885151878060192 1.6989700043360187 0 0 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L};[Y{I|L}]{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}NR{I|L};[Y{I|L}]G{I|L}{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}Y{I|L}G{I|L}{I|L}[RN]{M(Oxidation (M))|F};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 8.5719;8.254;8.0874;7.9604;7.6798;7.6425;7.3643;6.9566;6.9395;6.8727 -;+;+;-;-;-;-;-;-;- + 1156 + NaN NaN 302251.2 NaN 14772 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18371 76.42 NaN 204710 35 0 23214 0.264 + -1 IEFYYCSEI 9 49 408.51489631056984 1222.5228595319095 3 408.51483154296875 MULTI HCD FTMS 0 0 0 18365 188744.515625 0.2514380467791599 7 -0.19750213623046875 6 Carbamidomethyl (C) _IEFYYC(Carbamidomethyl (C))SEI_ REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|256|2|anti-sense 2.498486711656943 0.33207666356665205 1 {I|L} 1 -1 5.4846 0 0 0.44863 0 0 463.13074579677794 643.2799166315061 1106.410662428284 0 0 0 0 0 0 0 0 0 {I|L} 0.44863 + + 22 + NaN NaN 112461.3 NaN 14773 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18372 76.423 NaN 227590 35 0 21381 0.261 + 22308 QPGEVRLH 8 63 468.25547956586536 NaN 0 468.2560729980469 PEAK HCD FTMS 0 0 0 18365 137102.84375 1 0 0 7 Unmodified _QPGEVRLH_ nc|ENSG00000095539|Q9NTN9-3|SEMA4G 5.230669730166228 0.38822285293237185 1 Q 1 7 5.7268 0 0 0.61282 0 0 97.10786967684949 706.304833558809 803.4127032356586 0 0 0 0 0 0 0 0 0.3252574989159953 + Q 0.61282 + + 65 + NaN NaN 114237.8 NaN 14774 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18373 76.427 NaN 629850 35 0 190470 0.261 -1 GDLEMIKMCLD 11 52 642.2903368273525 NaN 0 642.2897338867188 PEAK HCD FTMS 0 0 0 18365 121371.1015625 0.7814320725797462 -2 0.05214691162109375 8 Oxidation (M) _GDLEMIKM(Oxidation (M))CLD_ ENSG00000104321|ENST00000262209|TRPA1;TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant 5.296884461304476 0.3270944076746277 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.54498 0 0 287.05392697326107 845.4228837077843 1132.4768106810454 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54498 + + 5 + NaN NaN 196299.2 NaN 14775 3596 18365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18375 76.432 NaN 6516300 35 0 1217500 0.327 + 28508 TPQFPDMIL 9 72 539.2679517160655 1076.5213504989308 2 539.2681884765625 MULTI HCD FTMS 0 0 0 18374 5775613 0.30897124085301464 21 -0.5957717895507812 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 99.75527289724121 0.004270341300239591 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 88.648 0 0 8.2346 8.2346 87.541 0 0 0 1.249387366082999 16.478174818886373 1.249387366082999 1.249387366082999 0 1.9247425010840047 0 1.5114393726401687 0.6203715150305281 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L} 8.2346;8.1186;6.7452;6.6869;6.5391;3.6566;3.6566 -;+;-;-;-;-;- + 1293 NaN NaN 595614.5 NaN 14776 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18376 76.436 NaN 1049200 35 0 164580 0.261 + 24630 RYLQDLLAW 9 89 589.320157481225 1176.62576202925 2 589.3209228515625 MULTI HCD FTMS 0 0 0 18374 411963.125 0.17620791015500734 4 -0.1042633056640625 2 Unmodified _RYLQDLLAW_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant 38.175570920033316 0.07371992880350783 1 YY{I|L}VH{I|L}{I|L}A 8 4 62.195 0 0 5.2859 0 0 0 201.06297597088385 201.06297597088385 40.51280883651395 0 0 0 0 2.6331596456423734 1.5228787452803376 0 0 YY{I|L}VH{I|L}{I|L}A 5.2859 - 835 NaN NaN 258073.9 NaN 14777 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18377 76.44 NaN 624770 35 0 49939 0.261 + 21339 PSWAYSTLLF 10 92 592.8025974236541 1183.5906419141081 2 592.8024291992188 MULTI HCD FTMS 0 0 0 18374 489410.46875 0.21441151398935107 19 -0.5301513671875 3 Unmodified _PSWAYSTLLF_ ENST00000409185.5_1_2:131806791-131806905:-|nuORF 26.88365393820708 0.25965138844209146 1 S[R{I|L}]C(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 7 6 42.076 0 0 3.5549 0 0 276.1109283596053 0 276.1109283596053 0 12.026391799099727 0 0 0 2.1549471895720984 0 0.6861818737241735 0 S[R{I|L}]C(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 3.5549 - 1400 NaN NaN 189160.8 NaN 14778 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18378 76.443 NaN 734960 35 0 124010 0.261 + 15584 LPDVSLQEF 9 79 524.271329482237 1046.5281060312739 2 524.271484375 MULTI HCD FTMS 0 0 0 18374 408914.65625 0.6994217555301556 1 -0.02935791015625 4 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 96.36657018975838 0.004359138328518304 1 VS{I|L}QE{M(Oxidation (M))|F} 6 3 74.73 0 0 7.1407 0 0 325.1630070095926 0 325.1630070095926 0 60.438134727926 0 0 0 2.3494850021680094 0 1.2302046884880937 0.7302046884880937 + VS{I|L}QE{M(Oxidation (M))|F} 7.1407 + + 410 + NaN NaN 207724 NaN 14779 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18379 76.446 NaN 559380 35 0 131740 0.261 + 33154 YELLGNPVL 9 60 509.28438533016487 1016.5542177271298 2 509.28448486328125 MULTI HCD FTMS 0 0 0 18374 360054.375 0.18211522966573246 9 -0.25600433349609375 5 Unmodified _YELLGNPVL_ ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-3|SVEP1;SVEP1|p.A3133Qfs*12|1|0.3|ENSG00000165124|chr9:110406203-110406203|C/-|frameshift_variant;SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant 26.88365393820708 0.12808753336095696 1 V{I|L} 2 7 25.969 0 0 2.5546 0 0 786.3916444405603 0 786.3916444405603 0 6.972805581256196 0 0 0 0.5 0 0 0 + V{I|L} 2.5546 + + 33 NaN NaN 168799.2 NaN 14780 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18380 76.449 NaN 242920 35 0 29487 0.261 -1 MPDIDFNL 8 60 490.72326141629566 979.4319698993913 2 490.7233581542969 MULTI HCD FTMS 0 0 0 18374 148721.890625 0.7549030983604959 1 -0.02935791015625 6 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 1 D{M(Oxidation (M))|F}N{I|L} 4 -1 34.909 0 0 3.5642 0 0 472.1959706037125 0 472.1959706037125 0 21.414412723804546 0 0 0 0.4247425010840047 0 0 0.3494850021680094 D{M(Oxidation (M))|F}N{I|L} 3.5642 + + 63 NaN NaN 120489.6 NaN 14781 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18381 76.453 NaN 423420 35 0 29421 0.261 + 30426 VLPHFNVLF 9 73 543.3110007937669 1084.6074486543337 2 543.8136596679688 MULTI HCD FTMS 0 0 0 18374 44829.3828125 0.33764323397360574 1 -0.02935791015625 7 Unmodified _VLPHFNVLF_ ENSG00000103043|ENST00000261776|VAC14 53.57557251787612 0.02656881086235134 1 V{I|L}{M(Oxidation (M))|F} 3 6 29.693 0 0 2.7376 0 0 707.3770319100179 0 707.3770319100179 0 3.6176468817137675 0 0 0 1 0 0 0 + V{I|L}{M(Oxidation (M))|F} 2.7376 + + 195 NaN NaN 140123.8 NaN 14782 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18382 76.456 NaN 360640 35 0 44223 0.261 + 6626 FPLSESQTLL 10 64 567.8057107268437 1133.5968685204873 2 568.3071899414062 MULTI HCD FTMS 0 0 0 18374 112216.96875 0.8047998748517451 2 -0.04541015625 8 Unmodified _FPLSESQTLL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 26.268140514670165 0.2654086933305545 1 T{I|L}{I|L} 3 7 38.672 0 0 3.4115 0 0 788.3699982112198 0 788.3699982112198 0 31.682437647924218 0 0 0 0.8494850021680094 0 0.6989700043360187 0 + T{I|L}{I|L} 3.4115 + + 84 NaN NaN 134795.6 NaN 14783 3597 18374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18384 76.461 NaN 1446500 35 0 398200 0.327 + 10571 IPLEEGELEL 10 80 571.3032664697377 1140.5919800062752 2 571.3034057617188 MULTI HCD FTMS 0 0 0 18383 1301575.75 0.896665488921633 2 -0.05214691162109375 1 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 88.95385435242217 0.0010827080174394257 1 {[QN]|[E{I|L}]|[KN]}{I|L}PEGE{I|L}E{I|L} 10 2 + 97.44 0 0 8.5429 8.5429 96.359 0 0 0 20.413705284069223 64.09018283151306 20.413705284069223 31.832457864033202 0 1.4247425010840047 1.3010299956639813 1.079689690656103 0 {[QN]|[E{I|L}]|[KN]}{I|L}PEGE{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}[{I|L}P]E{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}{[QN]|[E{I|L}]|[KN]}P{I|L}E{I|L} 8.5429;5.7521;5.3338 -;-;- 424 NaN NaN 302374.2 NaN 14784 3598 18383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18385 76.465 NaN 436110 35 0 65093 0.261 + 1057 AYGNVFSAF 9 66 488.2321818155413 974.4498106978826 2 488.2324523925781 MULTI HCD FTMS 0 0 0 18383 183156.6875 0.09086660832365291 7 -0.2042694091796875 2 Unmodified _AYGNVFSAF_ ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 56.17704186161178 0.022929533404884107 1 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 3 + 55.34 0 0 5.6791 5.6791 92.413 0 0 0 11.271818570135324 30.41833743429045 11.271818570135324 55.27310937020445 0 1.8494850021680094 0 0 1.274227503252014 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};[RP][HN]{M(Oxidation (M))|F}H[PA] 5.6791;0.0068503 -;- 219 NaN NaN 157955 NaN 14785 3598 18383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18386 76.469 NaN 223660 35 0 20934 0.261 + 26814 SYIEHIFEI 9 71 575.7925321992703 1149.5705114653406 2 575.7926635742188 MULTI HCD FTMS 0 0 0 18383 79300.1796875 0.4445793407903336 7 -0.2042694091796875 3 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 47.748688679222035 0.03472022231463587 1 [YT]VHE{I|L}{M(Oxidation (M))|F}E{I|L} 9 4 + 54.676 0 0 4.7562 4.7562 84.139 0 0 0 7.513487579716767 16.478174818886373 7.513487579716767 7.034021960761265 0 0.9604093769761874 1.3010299956639813 0 0 [YT]VHE{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VHE{M(Oxidation (M))|F}{I|L}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HE{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HE{M(Oxidation (M))|F}{I|L}E{I|L};[YT][NG]{[HG]|PP}{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VHHH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{[YC]|[HE]}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}H]|[RQ]}SY{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[WK]{[DA]|[EG]}{M(Oxidation (M))|F}E{I|L};[YT][NG]{[HG]|PP}{M(Oxidation (M))|F}{I|L}E{I|L} 4.7562;4.1443;4.1026;3.4907;2.6281;2.5782;2.4061;2.3042;2.1288;2.0162 -;-;-;-;-;-;-;-;-;- 706 NaN NaN 119050.9 NaN 14786 3598 18383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18387 76.472 NaN 130780 35 0 8046.9 0.262 + 11812 KELNQRIG 8 63 479.2775206833423 956.5404884334846 2 479.2775573730469 MULTI HCD FTMS 0 0 0 18383 164911.953125 0.6833715248014041 -8 0.21488189697265625 4 Unmodified _KELNQRIG_ ENSG00000166669|ENST00000562102|ATF7IP2;nc|ENSG00000166669|Q5U623-2|ATF7IP2 2.577480529830294 0.5381683276125971 1 P 1 8 5.4846 0 0 0.57337 0 0 500.2816821364127 356.17685877017817 856.4585409065909 0 0 0 0 0 0 0 0 0 P 0.57337 - 24 + NaN NaN 98719.2 NaN 14787 3598 18383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18389 76.477 NaN 765550 35 0 50466 0.327 + -1 CQMCKFLI 8 82 550.2590133384192 1098.5034737436383 2 550.2593994140625 MULTI HCD FTMS 0 0 0 18388 393067.25 0.1663776367454737 11 -0.31516265869140625 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))QMC(Carbamidomethyl (C))KFLI_ REV__ZNF682|p.K171I|1|0.22|ENSG00000197124|chr19:20006990-20006990|T/A|missense_variant 14.581692164780916 0.48650662947107914 1 TPQ{M(Oxidation (M))|F}PD 6 -1 49.078 0 0 4.4677 0 0 0 410.17413214383515 410.17413214383515 9.424712680444358 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0.2742275032520141 TPQ{M(Oxidation (M))|F}PD 4.4677 - 283 + NaN NaN 208572.8 NaN 14788 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18390 76.481 NaN 756550 35 0 91950 0.261 + 7378 FVHDLVLYL 9 85 559.8158488922737 1117.6171448513473 2 559.8168334960938 MULTI HCD FTMS 0 0 0 18388 386500.5 0.20679501317012333 -4 0.11093902587890625 2 Unmodified _FVHDLVLYL_ CLTC-VMP1|12|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC 36.04419817259434 0.08350412372117409 1 {NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}Y{I|L} 9 4 + 59.403 0 0 5.3151 5.3151 83.095 0 0 0 10.675902640767553 32.28978457299817 10.675902640767553 2.5591597954944874 0 1.305462187404089 1.3010299956639813 0.3494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}Y{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}VY{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{I|L}Y;[Y{I|L}]{M(Oxidation (M))|F}[HV][DV]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}[Y{I|L}]V{I|L};[Y{I|L}]{M(Oxidation (M))|F}[HV]{NN|[MP]|[D{I|L}]|[EV]}V{I|L};[HD]{M(Oxidation (M))|F}[{I|L}V]V{I|L}Y{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}[Y{I|L}]{I|L}V;[Y{I|L}]{M(Oxidation (M))|F}[HV]{NN|[MP]|[D{I|L}]|[EV]}{I|L}V;[HD]{M(Oxidation (M))|F}[{I|L}V]VY{I|L}{I|L} 5.3151;5.0861;4.2463;2.7625;2.7426;2.2747;2.0184;1.8045;1.3366;1.0193 -;-;-;-;-;-;-;-;-;- 419 NaN NaN 216186.4 NaN 14789 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18391 76.485 NaN 274520 35 0 55121 0.261 + 22454 QQQHQHNMVL 10 56 631.8080209296728 1261.6014889261455 2 631.8079833984375 MULTI HCD FTMS 0 0 0 18388 86989.40625 0.32309835666370534 8 -0.24335479736328125 3 Unmodified _QQQHQHNMVL_ REV__ENSG00000018408|ENST00000360632|WWTR1 6.2057823575117 0.44245551207394906 1 VV{I|L} 3 -1 29.693 0 0 2.3536 0 0 932.3716297834 0 932.3716297834 0 17.72034022175138 0 0 0 0.5 0 0 0 VV{I|L} 2.3536 - 107 NaN NaN 131400.8 NaN 14790 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18392 76.488 NaN 383250 35 0 42233 0.261 + 6627 FPLSESQTLL 10 74 567.8057107268437 1133.5968685204873 2 567.8057250976562 MULTI HCD FTMS 0 0 0 18388 135676.75 0.6259799373537924 6 -0.1882171630859375 4 Unmodified _FPLSESQTLL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 36.506200033944 0.17572556831573002 1 T{I|L}{I|L} 3 7 39.297 0 0 3.4666 0 0 788.3719959943375 0 788.3719959943375 0 18.1259189508755 0 0 0 0.7302046884880937 0 0.7302046884880937 0 + T{I|L}{I|L} 3.4666 + + 199 NaN NaN 140081 NaN 14791 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18393 76.492 NaN 284450 35 0 36760 0.264 + 10288 IKSLDDSSNET 11 56 403.52690635450125 NaN 0 403.5267639160156 PEAK HCD FTMS 0 0 0 18388 74070.2578125 0.06796593944037488 20 -0.5666275024414062 5 Unmodified _IKSLDDSSNET_ ENSG00000198797|ENST00000361539|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;nc|ENSG00000198797|Q9C0B6-2|BRINP2 4.189502756095605 0.3302357306631285 1 {M(Oxidation (M))|F} 1 11 6.9897 0 0 0.86824 0 0 170.8343780392775 484.13620935611567 654.9705873953932 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.86824 - 8 + NaN NaN 141862.1 NaN 14792 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18394 76.495 NaN 244920 35 0 20700 0.261 + -1 FPMNMKRL 8 77 526.7730005087975 1051.531448084395 2 526.7727661132812 MULTI HCD FTMS 0 0 0 18388 84158.4921875 0.17025625633979033 -11 0.27545166015625 6 Oxidation (M) _FPM(Oxidation (M))NMKRL_ REV__ENSG00000164500|ENST00000297001|SPATA48 19.438996006549623 0.45076845602799126 1 {I|L}MD{[QV]|[N{I|L}]|[RA]|[KV]}A{I|L} 7 -1 62.916 0 0 5.9832 0 0 0 278.1124666803344 278.1124666803344 47.43099345703163 0 0 0 0 1.7856668758921828 2 0.4247425010840047 0.28872548999643577 {I|L}MD{[QV]|[N{I|L}]|[RA]|[KV]}A{I|L} 5.9832 - 101 + NaN NaN 115953.5 NaN 14793 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18395 76.498 NaN 240730 35 0 12741 0.261 -1 YPIYDVLQM 9 70 579.2814517187753 1156.5483505043505 2 579.2923583984375 MULTI HCD FTMS 0 0 0 18388 42990.8515625 0.44171227543153374 -7 0.1922607421875 7 Oxidation (M) _YPIYDVLQM(Oxidation (M))_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000493271.1_1_2:96945134-96947649:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}E{I|L}[SG]{I|L}MT{I|L}{M(Oxidation (M))|F} 10 -1 + 46.041 0 0 3.9809 3.9809 87.416 0 0 0 18.440899702813027 3.0602027134092324 3.0602027134092324 17.19396287239803 0 0.5 0 0.5 0 {M(Oxidation (M))|F}E{I|L}[SG]{I|L}MT{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV][{M(Oxidation (M))|F}V]{I|L}Q{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV]Q[SG]SQ{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}H[RP][KC]Q{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YV]Q[SG]T{M(Oxidation (M))|F}N 3.9809;2.4942;2.1712;2.019;0.24671 -;-;-;-;- 273 + NaN NaN 129737.5 NaN 14794 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18396 76.502 NaN 180330 35 0 15008 0.261 + 1220 AYLLYSLHL 9 48 546.8082157772077 1091.6018786212153 2 546.8079833984375 MULTI HCD FTMS 0 0 0 18388 71435.6328125 0.20899921956956738 21 -0.5994796752929688 8 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 60.38955033654506 0.017036522530421875 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS 6 3 65.01 0 0 5.9555 0 0 0 378.2142428033813 378.2142428033813 59.52561882712928 0 0 0 0 1.8494850021680094 1.6989700043360187 0.3494850021680094 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS 5.9555 + + 55 + NaN NaN 121843.9 NaN 14795 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18397 76.505 NaN 54527 35 0 5770.1 0.261 -1 SYNNFFRMF 9 37 621.2736390554277 NaN 0 620.8098754882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 6.723162845929126 0.26266733336404485 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Y 3 -1 7.9318 0 0 0.63939 0 0 478.18172527706776 302.11606775455317 780.2977930316209 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Y 0.63939 - 15 + NaN NaN 95872.9 NaN 14796 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18398 76.508 NaN 204630 35 0 18574 0.261 -1 RCVMKCSHLI 10 64 623.8141343879787 1245.6137158427573 2 623.8138427734375 MULTI HCD FTMS 0 0 0 18388 47468.96875 0.3148002043394148 4 -0.12265777587890625 10 Carbamidomethyl (C) _RC(Carbamidomethyl (C))VMKCSHLI_ ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense 8.745405648335112 0.42901288225909884 1 {I|L}{I|L} 2 -1 22.959 0 0 1.8432 0 0 1001.4350482214213 0 1001.4350482214213 0 13.917731411351749 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.8432 + + 60 NaN NaN 115657.3 NaN 14797 3599 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18400 76.513 NaN 18059000 35 0 2005100 0.327 + 13418 KYPENFFLL 9 97 585.8132425088911 1169.6119320845821 2 585.8140869140625 MULTI HCD FTMS 0 0 0 18399 17341614 0.08746958016491575 33 -0.8183517456054688 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 97.147 0 0 8.3059 8.3059 91.97 0 0 0 10.537085263637707 59.59643375746646 10.537085263637707 9.208187539523749 0 2.4802046884880937 0 0.2614393726401688 1.988786695683067 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.3059;7.5187;7.5036;7.3676;7.1672;6.7163;6.5803;6.5653;6.3799;6.3335 +;-;-;-;-;-;-;-;-;- + 6192 NaN NaN 643515 NaN 14798 3600 18399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18401 76.517 NaN 1884000 35 0 281100 0.261 + 5972 FPDQVAIQL 9 65 515.7819977459875 1029.549442558775 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18399 1348675.75 0.3945063700380963 -8 0.22835540771484375 2 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 70.33199760932243 0.0089807860198535 1 QVA{I|L}Q{I|L} 6 3 63.805 0 0 6.1974 0 0 359.1468678205094 0 359.1468678205094 0 32.34682109814557 0 0 0 1.9247425010840047 0 0 0.7302046884880937 + QVA{I|L}Q{I|L} 6.1974 + + 533 NaN NaN 382719.8 NaN 14799 3600 18399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18402 76.521 NaN 773360 35 0 85721 0.261 -1 0 101 597.3220705055342 596.3147940389341 1 598.3397216796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 4 -1 29.239 0 0 4.9033 0 0 0 131.0705062794216 131.0705062794216 -3.552659518797938 0 -3.552659518797938 0 0 0 1.5228787452803376 0.25 0.3807196863200844 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 4.9033 - 100 NaN NaN 216365.3 NaN 14800 3600 18399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18403 76.524 NaN 256750 35 0 18581 0.263 + 14110 LAAARSRSV 9 69 465.7775000012219 929.5404470692438 2 465.7774963378906 MULTI HCD FTMS 0 0 0 18399 226462.46875 0.6482183920589389 12 -0.3406524658203125 4 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 3.5964929083625545 0.32375295897743744 1 [RH]PG 4 -1 11.682 0 0 1.2568 0 0 0 479.26802210270006 479.26802210270006 7.703037561203843 0 0 0 0 0 0 0 0 [RH]PG 1.2568 - 20 NaN NaN 136651.1 NaN 14801 3600 18399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18404 76.528 NaN 320190 35 0 32657 0.261 + 25858 SMFGSITSFIL 11 69 601.8082769108884 NaN 0 601.808349609375 PEAK HCD FTMS 0 0 0 18399 125145.765625 0.12110801677642301 43 -1.028289794921875 5 Unmodified _SMFGSITSFIL_ REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF 21.536976647645854 0.24456835918233516 1 {I|L}{M(Oxidation (M))|F} 2 -1 17.206 0 0 1.4319 0 0 131.09278649801223 807.33312817777 938.4259146757822 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.4319 - 131 + NaN NaN 131732.1 NaN 14802 3600 18399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18405 76.531 NaN 288210 35 0 26005 0.261 + 30427 VLPHFNVLF 9 67 543.3110007937669 1084.6074486543337 2 543.3109130859375 MULTI HCD FTMS 0 0 0 18399 133880.09375 0.9849021894158768 2 -0.05379486083984375 6 Unmodified _VLPHFNVLF_ ENSG00000103043|ENST00000261776|VAC14 36.04419817259434 0.08350412372117409 1 V{I|L}{M(Oxidation (M))|F} 3 6 34.693 0 0 3.1986 0 0 707.3737660138687 0 707.3737660138687 0 11.822493071085415 0 0 0 1 0 0 0 + V{I|L}{M(Oxidation (M))|F} 3.1986 + + 30 NaN NaN 130013.6 NaN 14803 3600 18399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18407 76.536 NaN 1440000 35 0 244060 0.327 + 35502 YYFSKLIEF 9 87 605.3131340877388 1208.6117152422776 2 605.3133544921875 MULTI HCD FTMS 0 0 0 18406 1317738.375 0.22819867356997917 5 -0.15174102783203125 1 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 110.5527297667825 0.0028521687250969148 1 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 101.74 0 0 8.4177 8.4177 90.023 0 0 0 5.300084529637985 5.300084529637985 5.300084529637985 6.064921830680703 0 2.6989700043360187 2 0.9163865622122673 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};[KS]{M(Oxidation (M))|F}YY{I|L}{I|L}E{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}YY{I|L}E{I|L}{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}YY{I|L}E{M(Oxidation (M))|F}{I|L};[KS]{M(Oxidation (M))|F}{I|L}{I|L}YYE{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}{I|L}{I|L}EYY{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F}EYY;{[QN]|[E{I|L}]|[KN]}{I|L}YY{M(Oxidation (M))|F}[KS]{M(Oxidation (M))|F} 8.4177;7.9159;6.9861;3.5249;3.0231;2.0934;1.2084;1.1382;1.106;0.62537 +;-;-;-;-;-;-;-;-;- + 365 NaN NaN 304624.7 NaN 14804 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18408 76.542 NaN 1480100 35 0 166030 0.474 + 25882 SMTRYFYLF 9 95 614.2962758909922 1226.5779988487843 2 614.2969970703125 MULTI HCD FTMS 0 0 0 18406 1202184.875 0.9960571894979767 3 -0.096588134765625 2 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 69.10491478415734 0.009377850133389008 1 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 7 + 61.85 0 0 5.0425 5.0425 81.648 0 0 0 14.097857090594616 24.11929550807981 14.097857090594616 0.45757490560674796 0 0.5 1.3010299956639813 0.8494850021680094 0.5501648626366046 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV{NN|[MP]|[D{I|L}]|[EV]}VT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}RRC{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}RRYC[HK]{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}RRYC[HQ]{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}RRYWAEE 5.0425;5.0052;3.6997;3.4022;3.1719;2.8488;2.5176;2.3763;2.3763;2.2109 -;-;-;-;-;-;-;-;-;- 2377 NaN NaN 308934.9 NaN 14805 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18409 76.549 NaN 2277000 35 0 336840 0.261 + 13049 KYLAILGSVTF 11 114 606.3550456411812 1210.6955383491622 2 606.35546875 MULTI HCD FTMS 0 0 0 18406 638639.5625 0.8875147980902104 1 -0.031036376953125 3 Unmodified _KYLAILGSVTF_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 68.43565094957556 0.016841436477045647 1 [Y{I|L}]KA{I|L}{I|L}GSVT{M(Oxidation (M))|F} 11 2 + 76.887 0 0 6.3507 6.3507 86.28 0 0 0 17.121495538903275 45.03962887397195 17.121495538903275 5.752574989159953 0 2.4361818737241734 1.3979400086720375 0.5629529932484498 0 [Y{I|L}]KA{I|L}{I|L}GSVT{M(Oxidation (M))|F};[Y{I|L}]KA{I|L}{I|L}GSS{I|L}{M(Oxidation (M))|F};[Y{I|L}]AK{I|L}{I|L}GSVT{M(Oxidation (M))|F};[Y{I|L}]KA{I|L}EKVT{M(Oxidation (M))|F};[Y{I|L}]AK{I|L}{I|L}GSS{I|L}{M(Oxidation (M))|F};[Y{I|L}]KA{I|L}EKS{I|L}{M(Oxidation (M))|F};[Y{I|L}]AK{I|L}EKVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VK{I|L}{I|L}GSVT{M(Oxidation (M))|F};[Y{I|L}]AK{I|L}EKS{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VK{I|L}{I|L}GSS{I|L}{M(Oxidation (M))|F} 6.3507;5.8755;5.4589;5.3945;4.9837;4.9194;4.5027;4.4827;4.0276;4.0076 -;-;-;-;-;-;-;-;-;- 2246 NaN NaN 428250.2 NaN 14806 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18410 76.552 NaN 1253600 35 0 95098 0.261 + 27138 SYMWTINNF 9 110 596.2603157106057 1190.5060784880113 2 596.2603759765625 MULTI HCD FTMS 0 0 0 18406 761012.0625 0.6608796290014308 -2 0.0588531494140625 4 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 137.42381684818497 0.00015474832393368816 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NN{M(Oxidation (M))|F} 9 0 + 76.251 0 0 6.4049 6.4049 88.648 0 0 0 3.65279269351241 43.59550797172323 3.65279269351241 9.208187539523749 0 2.5682503180159344 0 1.5189301784845295 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GGN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NGG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}[YG]NN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}W[HD]{I|L}MD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KQ]TWEC{M(Oxidation (M))|F};[YK]{[QS]|[NT]}TWEC{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YQ]{M(Oxidation (M))|F}{I|L}MD{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[SG]{M(Oxidation (M))|F}{I|L}MD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}[PS][YG]NN{M(Oxidation (M))|F} 6.4049;5.6314;5.6314;3.8571;3.7755;3.7478;3.3565;3.2146;3.0534;3.0317 +;-;-;-;-;-;-;-;-;- + 7532 NaN NaN 271250.5 NaN 14807 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18411 76.555 NaN 398980 35 0 46034 0.261 + 24219 RYFLPPYTF 9 80 602.3116138496628 1202.6086747661254 2 602.3124389648438 MULTI HCD FTMS 0 0 0 18406 207411.203125 0.32341914334420563 11 -0.31789398193359375 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 27.628801355627647 0.12213550946336599 1 MG{I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 8 3 38.013 0 0 3.1609 0 0 278.163377830275 0 278.163377830275 0 20.821778646281356 0 0 0 1.305462187404089 0 0 0 MG{I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 3.1609 - 529 NaN NaN 143070.2 NaN 14808 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18412 76.559 NaN 218540 35 0 21651 0.261 -1 LYCVCIEIL 9 58 563.2861624018318 1124.5577718704635 2 563.28662109375 MULTI HCD FTMS 0 0 0 18406 85623.8671875 0.6083059166525504 6 -0.18450164794921875 6 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))VCIEIL_ ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR 16.942295170755138 0.21397866736869717 1 {I|L}{I|L} 2 -1 23.271 0 0 2.0694 0 0 880.3781983282739 0 880.3781983282739 0 14.291746928241125 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 2.0694 + + 15 NaN NaN 111990.7 NaN 14809 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18413 76.562 NaN 232850 35 0 24005 0.261 + 8315 GYAHWIGLF 9 77 532.271433708557 1062.5283144839138 2 532.2710571289062 MULTI HCD FTMS 0 0 0 18406 48045.14453125 0.5105293624727978 9 -0.25630950927734375 7 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 28.173230860318316 0.11963627304438548 1 {I|L}G{I|L}{M(Oxidation (M))|F} 4 5 35.165 0 0 3.3096 0 0 614.2657337873062 0 614.2657337873062 0 26.212600430434705 0 0 0 0.9247425010840047 0 0 0 + {I|L}G{I|L}{M(Oxidation (M))|F} 3.3096 + + 87 NaN NaN 130234.7 NaN 14810 3601 18406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18415 76.567 NaN 1498100 35 0 186930 0.327 + 17107 LYLGLFNRL 9 83 554.8292679378519 1107.6439829425037 2 554.8294677734375 MULTI HCD FTMS 0 0 0 18414 651805.1875 0.39769341333915814 2 -0.0655517578125 1 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 100.37149154755038 0.004254194004462789 1 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 10 2 + 94.29 0 0 8.5126 8.5126 89.073 0 0 0 21.175456378831612 4.697281559945239 4.697281559945239 3.521825181113627 0 2.916386562212267 1.6989700043360187 0 0 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L};[Y{I|L}]{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};[Y{I|L}]G{I|L}{M(Oxidation (M))|F}{I|L}NR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};[Y{I|L}]{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L} 8.5126;8.1947;8.0886;7.9409;7.8399;7.6371;7.6229;7.3885;6.9636;6.7149 -;+;+;-;-;-;-;-;-;- + 1329 + NaN NaN 315144.5 NaN 14811 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18416 76.571 NaN 1529900 35 0 169390 0.261 + 30094 VFVDSVPEF 9 98 519.7609354107478 1037.5073178882956 2 519.7608032226562 MULTI HCD FTMS 0 0 0 18414 240563.21875 0.476203711396174 1 -0.03276824951171875 2 Unmodified _VFVDSVPEF_ ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9 88.90359156742426 0.00455469703666567 1 [{M(Oxidation (M))|F}V]VDSV[EP]{M(Oxidation (M))|F} 9 0 + 44.61 0 0 4.2997 4.2997 87.725 0 0 0 1.9807721343995297 22.996287601594368 1.9807721343995297 16.655462488490684 0 2.385151878060192 0 0.6989700043360187 0 + + [{M(Oxidation (M))|F}V]VDSV[EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[EP]{M(Oxidation (M))|F};[TP][YV]SV[EP]{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}EE[EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SD[{I|L}T]{I|L};[K{I|L}]{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{[CA]|SS}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S[WK]Q;[{M(Oxidation (M))|F}V]VD[PA]E[YV];[{M(Oxidation (M))|F}V]V{[C(Carbamidomethyl (C))E]|[WC]}{I|L}K[SG];[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C(Carbamidomethyl (C))[KQ]{I|L} 4.2997;2.6944;2.5891;1.6783;0.98904;0.68367;0.55711;0.2643;0.26128;0.18638 +;-;-;-;-;-;-;-;-;- + 1389 NaN NaN 319084.1 NaN 14812 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18417 76.575 NaN 502790 35 0 29761 0.261 + 12392 KPGKGARAE 9 85 457.2642199679544 912.5138870027088 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18414 565203.375 0.7858089820926958 9 -0.25809478759765625 3 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 Q 1 9 11.688 0 0 1.2809 0 0 414.24595920059335 367.19700420682466 781.442963407418 0 0 0 0 0 0.6203715150305281 0 0 0 Q 1.2809 - 58 + NaN NaN 165736.1 NaN 14813 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18418 76.578 NaN 388980 35 0 178770 0.261 -1 YCHECGKSF 9 52 565.7236041398335 1129.4326553464668 2 565.7238159179688 MULTI HCD FTMS 0 0 0 18414 110222.46875 0.08919843181954515 14 -0.3948516845703125 4 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HECGKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 2.0597508629832335 0.3354026079994024 1 S{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.3235 0 0 877.3222407730278 0 877.3222407730278 0 7.95880017344075 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.3235 + + 13 + NaN NaN 148515.8 NaN 14814 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18419 76.581 NaN 196900 35 0 31040 0.261 + 23092 RENSHRLF 8 54 529.7800231551053 NaN 0 529.7633666992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RENSHRLF_ ENSG00000185163|ENST00000397333|DDX51 9.347437153973935 0.38822285293237185 1 {M(Oxidation (M))|F}Y 2 8 10.969 0 0 1.0372 0 0 131.1286494666835 613.2588595025999 744.3875089692833 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 1.0372 - 39 + NaN NaN 107643 NaN 14815 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18420 76.585 NaN 120260 35 0 11988 0.263 + 16757 LYDFYYHGF 9 41 408.84940961933376 NaN 0 408.5150451660156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYDFYYHGF_ REV__ENSG00000162341|ENST00000294309|TPCN2;REV__ENST00000442692.2_1_11:68845982-68853340:+|nuORF;REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF 2.9952420565917617 0.2807323172627736 1 T 1 -1 0.71334 0 0 0.087453 0 0 595.5641166246066 116.05064569644765 711.6147623210543 0 0 0 0 0 0 0 0 0 T 0.087453 - 1 + NaN NaN 97735.1 NaN 14816 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18421 76.588 NaN 91794 35 0 6765.1 0.261 + -1 CEPSSPFAMMI 11 39 635.2713623046875 NaN 0 635.2713623046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))EPSSPFAMMI_ REV__ENST00000375173.1_1_9:100364753-100365089:-|nuORF 9.38312468134398 0.31550292094573573 1 M 1 -1 16.237 0 0 1.28 0 0 262.13012802558734 872.3353365533811 1134.4654645789685 0 0 0 0 0 0.9247425010840047 0 0 0 M 1.28 + + 9 + NaN NaN 107881.8 NaN 14817 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18422 76.591 NaN 104110 35 0 7980.1 0.261 + 27045 SYMFVDENTF 10 52 626.7631971560207 1251.5118413788414 2 626.7626342773438 MULTI HCD FTMS 0 0 0 18414 42636.890625 0.7269420279556201 -1 0.031036376953125 8 Unmodified _SYMFVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 8.155526934196011 0.43213520406898465 1 C{M(Oxidation (M))|F} 2 9 17.959 0 0 1.435 0 0 983.3967152326187 0 983.3967152326187 0 8.494850021680094 0 0 0 0 0 0 0 C{M(Oxidation (M))|F} 1.435 - 20 NaN NaN 110181.1 NaN 14818 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18423 76.595 NaN 294660 35 0 24926 0.263 + 23104 RESTDPPIP 9 67 506.2610653918234 1010.5075778504469 2 506.2611999511719 MULTI HCD FTMS 0 0 0 18414 54096.30078125 0.6255491817111197 2 -0.0655517578125 9 Unmodified _RESTDPPIP_ REV__ENSG00000183423|ENST00000594814|LRIT3;REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 13.042465956692817 0.2476723265019929 1 ADQP 4 -1 21.899 0 0 2.1671 0 0 581.3058338849625 0 581.3058338849625 0 9.13430064969237 0 0 0 0 0 0 0.3807196863200844 ADQP 2.1671 - 65 NaN NaN 130282.2 NaN 14819 3602 18414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18425 76.6 NaN 3443100 35 0 636750 0.327 + 28509 TPQFPDMIL 9 83 539.2679517160655 1076.5213504989308 2 539.2681274414062 MULTI HCD FTMS 0 0 0 18424 3007481.25 0.16088772112235974 27 -0.6980667114257812 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 83.42873516780209 0.004742894019233849 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 77.731 0 0 7.2205 7.2205 85.531 0 0 0 0.5102999566398125 16.478174818886373 0.5102999566398125 0.5102999566398125 0 1.9247425010840047 0 1.079689690656103 0.2614393726401688 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{I|L}[C(Carbamidomethyl (C))S]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{M(Oxidation (M))|F}QPT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{M(Oxidation (M))|F}[AG]PT{I|L} 7.2205;7.1731;6.4764;6.0749;5.8697;2.474;1.7999;1.2369;0.49764;0.38158 -;+;-;-;-;-;-;-;-;- + 1367 NaN NaN 558201.5 NaN 14820 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18426 76.604 NaN 527080 35 0 52108 0.261 + 24631 RYLQDLLAW 9 75 589.320157481225 1176.62576202925 2 589.3189697265625 MULTI HCD FTMS 0 0 0 18424 261086.4375 0.11167381915964186 10 -0.283599853515625 2 Unmodified _RYLQDLLAW_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant 29.081581746732265 0.1154664336125038 1 [YN][KT]P[KG]{I|L}AW 10 6 + 49.868 0 0 4.2382 4.2382 85.852 0 0 0 9.37861409075186 10.162574822053543 9.37861409075186 9.37861409075186 0 1.4247425010840047 1.0457574905606752 0.4247425010840047 0 [YN][KT]P[KG]{I|L}AW;{[CT]|[{M(Oxidation (M))|F}G]}A{I|L}{[QS]|[NT]}[KG]{I|L}AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[QS]|[NT]}[KG]{I|L}AW;{[CT]|[{M(Oxidation (M))|F}G]}AN[{I|L}T][KG]{I|L}AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[{I|L}T][KG]{I|L}AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[TA]{NN|[MP]|[D{I|L}]|[EV]}{I|L}AW;YY{M(Oxidation (M))|F}{I|L}{I|L}[KA]{I|L}{M(Oxidation (M))|F};[QP][TP]{I|L}Y[RV]G{M(Oxidation (M))|F} 4.2382;3.4411;3.3072;3.2047;3.0708;2.4962;2.4061;0.17521 -;-;-;-;-;-;-;- 392 NaN NaN 165808 NaN 14821 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18427 76.608 NaN 229220 35 0 33378 0.261 + 15585 LPDVSLQEF 9 63 524.271329482237 1046.5281060312739 2 524.2715454101562 MULTI HCD FTMS 0 0 0 18424 117835.59375 0.20155007061956642 7 -0.1925048828125 3 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 53.832793166522166 0.026208976789938845 1 QE{M(Oxidation (M))|F} 3 6 48.857 0 0 4.6684 0 0 624.3470585232645 0 624.3470585232645 0 38.354706403678875 0 0 0 1.5 0 0.805462187404089 0.2614393726401688 + QE{M(Oxidation (M))|F} 4.6684 + + 128 + NaN NaN 119680.4 NaN 14822 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18428 76.611 NaN 169760 35 0 23744 0.261 + 18025 MLLIQLPF 8 67 487.7907707922295 973.5669886512591 2 487.790771484375 MULTI HCD FTMS 0 0 0 18424 98225.21875 0.889848510649381 -7 0.19750213623046875 4 Unmodified _MLLIQLPF_ ENSG00000221931|ENST00000327930|OR6X1 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.5001 0 0 808.4880987360232 0 808.4880987360232 0 0.9589312379109955 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5001 + + 36 + NaN NaN 108106.8 NaN 14823 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18429 76.614 NaN 303780 35 0 83789 0.261 + 2326 DMSRYQHF 8 52 542.2377845841403 1082.4610162350805 2 542.2373046875 MULTI HCD FTMS 0 0 0 18424 110296.75 0.49898901417076685 -7 0.19750213623046875 5 Unmodified _DMSRYQHF_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-2|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5695 0 0 917.3827824477743 0 917.3827824477743 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5695 + + 9 + NaN NaN 127460.8 NaN 14824 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18430 76.618 NaN 185890 35 0 41397 0.261 + 26711 SYCYPPLC 8 48 473.1959183617114 944.3772837902228 2 473.1960754394531 MULTI HCD FTMS 0 0 0 18424 57243.734375 0.07082479083327914 12 -0.3359222412109375 6 Unmodified _SYCYPPLC_ REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF 5.230669730166228 0.5342319408533849 1 [WE]{I|L}Y 4 -1 18.729 0 0 1.9832 0 0 0 350.0844345771669 350.0844345771669 13.244171855527966 0 0 0 0 0.7302046884880937 0 0 0 [WE]{I|L}Y 1.9832 - 25 + NaN NaN 120156.8 NaN 14825 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18431 76.621 NaN 276730 35 0 34051 0.261 + 17338 LYPVGGVEAI 10 55 509.28438533016487 1016.5542177271298 2 509.28460693359375 MULTI HCD FTMS 0 0 0 18424 100492.2734375 0.05082891565114824 15 -0.427703857421875 7 Unmodified _LYPVGGVEAI_ REV__ENSG00000182919|ENST00000354421|C11orf54;REV__nc|nan|Q9H0W9-2|C11orf54;REV__nc|nan|Q9H0W9-3|C11orf54 14.838274106304384 0.3723198072575719 1 VEA{I|L} 4 -1 21.682 0 0 2.1329 0 0 586.3125928265423 0 586.3125928265423 0 2.2184874961635614 0 0 0 0.4247425010840047 0 0.4247425010840047 0 VEA{I|L} 2.1329 + + 45 + NaN NaN 145033.7 NaN 14826 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18432 76.624 NaN 548350 35 0 53394 0.261 + 4348 EVWPEVESL 9 86 544.2683657113326 1086.5221784894652 2 544.2687377929688 MULTI HCD FTMS 0 0 0 18424 64193.81640625 1 0 0 8 Unmodified _EVWPEVESL_ ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 43.85829265575387 0.04763305254408404 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NYVES{I|L} 9 5 + 30.479 0 0 2.8052 2.8052 80.312 0 0 0 1.4541465884044094 14.376619779632524 1.4541465884044094 3.0102999566398125 0 0.7302046884880937 0 0.2614393726401688 0.3252574989159953 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NYVES{I|L};{[{M(Oxidation (M))|F}C]|[YS]}N{I|L}YVES{I|L};[{M(Oxidation (M))|F}V][CS]{[TV]|[{I|L}S]}ER{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGYVES{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GG{I|L}YVES{I|L};{[QS]|[NT]}[QA][EP]VES{I|L};{[QS]|[NT]}[YV]YVES{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[WT]|[RM]}{[MS]|[{M(Oxidation (M))|F}A]}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}ER{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}S{[TV]|[{I|L}S]}{[MS]|[{M(Oxidation (M))|F}A]}S{I|L} 2.8052;2.5281;1.6846;1.6583;1.3813;0.81638;0.75528;0.70182;0.49598;0.34455 -;-;-;-;-;-;-;-;-;- 1003 NaN NaN 173266.9 NaN 14827 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18433 76.628 NaN 122140 35 0 25838 0.261 -1 SFDGIIAMM 9 41 500.7277445664722 NaN 0 500.72747802734375 PEAK HCD FTMS 0 0 0 18424 36071.640625 0.6945564618487504 -7 0.19750213623046875 9 Oxidation (M) _SFDGIIAM(Oxidation (M))M_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 16.942295170755138 0.2079222001251384 1 {I|L}A 2 -1 25.217 0 0 2.5231 0 0 519.2333156802968 293.06330286197505 812.2966185422717 0 0 0 0 0 1.4247425010840047 0 0 0 {I|L}A 2.5231 + + 15 + NaN NaN 99864.5 NaN 14828 3603 18424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18435 76.632 NaN 2157900 35 0 316950 0.327 + 7379 FVHDLVLYL 9 90 559.8158488922737 1117.6171448513473 2 559.8160400390625 MULTI HCD FTMS 0 0 0 18434 1641541.75 0.8782980819185416 1 -0.03277587890625 1 Unmodified _FVHDLVLYL_ CLTC-VMP1|12|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC 74.42276476219924 0.007657080072768255 1 {NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}Y{I|L} 9 4 + 69.632 0 0 6.2304 6.2304 86.476 0 0 0 6.7609125905568135 11.034087492996392 6.7609125905568135 6.7609125905568135 0 1.5 1.5228787452803376 0.9559771852360797 0 {NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}Y{I|L};[Y{I|L}]{I|L}P[HS]{I|L}Y{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}VY{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{I|L}Y;[Y{I|L}]{I|L}P[HS]Y{I|L}{I|L};[Y{I|L}]{I|L}P[HS]{I|L}{I|L}Y;{NN|[MP]|[D{I|L}]|[EV]}V{I|L}YH{M(Oxidation (M))|F}V{I|L};[Y{I|L}]V{[{M(Oxidation (M))|F}H]|[RQ]}VD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{I|L}YHV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}YV{I|L}{I|L} 6.2304;5.6254;5.4987;5.2431;4.8937;4.6381;4.5681;4.4286;4.2988;4.2216 -;-;-;-;-;-;-;-;-;- 1705 NaN NaN 422797.2 NaN 14829 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18436 76.637 NaN 482020 35 0 129970 0.261 + 10572 IPLEEGELEL 10 60 571.3032664697377 1140.5919800062752 2 571.30322265625 MULTI HCD FTMS 0 0 0 18434 371467.9375 0.25590710321481336 8 -0.22130584716796875 2 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 62.57269311338072 0.03206542651389879 1 EEW{I|L}E{I|L} 6 5 69.954 0 0 6.1331 0 0 323.2205982892594 0 323.2205982892594 0 61.001159735598875 0 0 0 1.8494850021680094 0 0.7302046884880937 0 EEW{I|L}E{I|L} 6.1331 - 194 NaN NaN 154991.5 NaN 14830 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18437 76.64 NaN 1461700 35 0 318510 0.261 + 35503 YYFSKLIEF 9 105 605.3131340877388 1208.6117152422776 2 606.2997436523438 MULTI HCD FTMS 0 0 0 18434 175560.703125 0.11243734925975919 9 -0.25081634521484375 3 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 59.368380827593164 0.01846506874148156 1 YY{M(Oxidation (M))|F}SK{I|L}{I|L}[{M(Oxidation (M))|F}E] 9 0 + 61.644 0 0 5.1004 5.1004 85.562 0 0 0 23.652340397648864 7.504311474114331 7.504311474114331 9.125853418640382 0 2.059894379144197 2 0.6989700043360187 0.6307196863200843 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}[{M(Oxidation (M))|F}E];YY{M(Oxidation (M))|F}{I|L}{I|L}[KS][{M(Oxidation (M))|F}E];YY{M(Oxidation (M))|F}{I|L}[KS]{I|L}[{M(Oxidation (M))|F}E];[Y{I|L}]KA{I|L}{M(Oxidation (M))|F}EYY;[Y{I|L}]KA{M(Oxidation (M))|F}{I|L}EYY;[Y{I|L}]KA{I|L}YY[{M(Oxidation (M))|F}E];[Y{I|L}]KAYY{I|L}[{M(Oxidation (M))|F}E] 5.1004;4.3453;4.0492;3.0748;2.8257;1.9556;1.7725 +;-;-;-;-;-;- + 1180 + NaN NaN 306581.7 NaN 14831 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18438 76.644 NaN 592220 35 0 31135 0.261 -1 0 88 550.2590133384192 1098.5034737436383 2 550.25927734375 MULTI HCD FTMS 0 0 0 18434 238113.484375 0.100788755124073 16 -0.44403839111328125 4 NaN NaN 1 [YT][YT]P{M(Oxidation (M))|F}Q 7 -1 32.596 0 0 2.9673 0 0 0 195.07479792092718 195.07479792092718 -3.03842790444223 0 -3.03842790444223 0 0 0.8807196863200843 1.154901959985743 0.4247425010840047 0.28872548999643577 [YT][YT]P{M(Oxidation (M))|F}Q 2.9673 - 600 NaN NaN 172273 NaN 14832 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18439 76.647 NaN 1530500 35 0 156920 0.261 + 27028 SYLSSILRF 9 88 543.3030007276184 1084.5914485220367 2 543.3027954101562 MULTI HCD FTMS 0 0 0 18434 513504.71875 0.2805145161172477 -4 0.11934661865234375 5 Unmodified _SYLSSILRF_ ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 142.0795815696625 1.719916958814042E-05 1 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8 2 96.042 0 0 8.8551 0 0 193.07233149920427 0 193.07233149920427 0 77.5419803010461 0 0 0 2.579689690656103 0 1.2491348669726234 0.3252574989159953 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8.8551 - 577 + NaN NaN 311999.3 NaN 14833 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18440 76.65 NaN 464740 35 0 156540 0.261 + 30861 VQPPHLFLW 9 67 568.8165274348469 1135.6185019364937 2 568.816650390625 MULTI HCD FTMS 0 0 0 18434 219676.515625 0.7175670524913785 -3 0.096588134765625 6 Unmodified _VQPPHLFLW_ ENSG00000174206|ENST00000398055|KICS2 36.04419817259434 0.08350412372117409 1 {M(Oxidation (M))|F}{I|L}W 3 6 34.737 0 0 3.0589 0 0 671.3743920222657 0 671.3743920222657 0 24.916440611282624 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}{I|L}W 3.0589 + + 63 NaN NaN 151659.6 NaN 14834 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18441 76.654 NaN 258980 35 0 12045 0.262 + 8116 GLLSAGRGGVA 11 72 479.2775206833423 956.5404884334846 2 479.2776184082031 MULTI HCD FTMS 0 0 0 18434 221439.375 0.9176130685331115 -2 0.0655517578125 7 Unmodified _GLLSAGRGGVA_ ENST00000265393.10_1_7:27779738-27779792:+|nuORF 5.296884461304476 0.39569033063702824 1 Q 1 11 7.2185 0 0 0.75465 0 0 458.2631898922474 367.19675623111567 825.4599461233631 0 0 0 0 0 0.5 0 0 0 Q 0.75465 - 108 + NaN NaN 136888.9 NaN 14835 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18442 76.657 NaN 245610 35 0 28690 0.261 -1 EMSKEWFLF 9 65 616.7867120052783 1231.5588710773566 2 616.7870483398438 MULTI HCD FTMS 0 0 0 18434 120564.7109375 0.9550979740374325 1 -0.03277587890625 8 Oxidation (M) _EM(Oxidation (M))SKEWFLF_ ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38 19.256988751693697 0.19398022840297344 1 R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 -1 16.911 0 0 1.3732 0 0 650.2144019384879 0 650.2144019384879 0 5.942124970647033 0 0 0 0.6109243748081782 0 0 0 R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 1.3732 - 27 + NaN NaN 139550.4 NaN 14836 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18443 76.66 NaN 266960 35 0 36720 0.262 + 23520 RNKMREAL 8 56 509.28438533016487 1016.5542177271298 2 509.28466796875 MULTI HCD FTMS 0 0 0 18434 134367.765625 0.06796311389486154 16 -0.44403839111328125 9 Unmodified _RNKMREAL_ REV__ENSG00000166578|ENST00000416617|IQCD;REV__nc|ENSG00000166578|Q96DY2-2|IQCD;REV__nc|ENSG00000166578|Q96DY2-3|IQCD 18.13498045792455 0.4603629008820478 1 VEA{I|L} 4 -1 20.005 0 0 1.9679 0 0 586.3153088909954 0 586.3153088909954 0 3.5514342509639363 0 0 0 0.3494850021680094 0 0.3807196863200844 0 VEA{I|L} 1.9679 - 82 + NaN NaN 147642.4 NaN 14837 3604 18434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18445 76.665 NaN 9567300 35 0 1260400 0.326 + 13419 KYPENFFLL 9 93 585.8132425088911 1169.6119320845821 2 585.8138427734375 MULTI HCD FTMS 0 0 0 18444 8145710.5 0.04108624938716465 38 -0.8761672973632812 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.172 0 0 8.2226 8.2226 90.591 0 0 0 8.182503180159358 16.478174818886373 8.182503180159358 8.182503180159358 0 2.5114393726401687 0 0.28872548999643577 2.0545970543767123 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 8.2226;7.523;7.4353;7.0725;6.7357;6.5724;6.4888;6.382;6.3729;6.2852 +;-;-;-;-;-;-;-;-;- + 5642 NaN NaN 428525 NaN 14838 3605 18444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18446 76.67 NaN 4191200 35 0 707610 0.231 + 5973 FPDQVAIQL 9 69 515.7819977459875 1029.549442558775 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18444 2045256.75 0.5982659777477383 -3 0.09832763671875 2 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 106.94017166704063 0.003441928997083001 1 QVA{I|L}Q{I|L} 6 3 71.86 0 0 6.9797 0 0 359.14814955879064 0 359.14814955879064 0 44.94850021680094 0 0 0 2.3494850021680094 0 0 1.110924374808178 + QVA{I|L}Q{I|L} 6.9797 + + 1006 NaN NaN 601982.9 NaN 14839 3605 18444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18447 76.673 NaN 568930 35 0 60420 0.261 + -1 FPMNMKRL 8 82 526.7730005087975 1051.531448084395 2 526.7728271484375 MULTI HCD FTMS 0 0 0 18444 190815.328125 0.38602763160764597 -5 0.15212249755859375 3 Oxidation (M) _FPM(Oxidation (M))NMKRL_ REV__ENSG00000164500|ENST00000297001|SPATA48 34.18733598223924 0.30560024141787767 1 {I|L}AVQDPE 7 -1 70.922 0 0 6.7447 0 0 281.1351795880875 0 281.1351795880875 0 31.97698543561387 0 0 0 2.0356668758921828 0 0 0.6109243748081782 {I|L}AVQDPE 6.7447 - 459 NaN NaN 179049.3 NaN 14840 3605 18444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18448 76.676 NaN 252970 35 0 50229 0.262 + 33751 YLESWGAARPF 11 43 432.88520384113593 NaN 0 432.88494873046875 PEAK HCD FTMS 0 0 0 18444 137948.203125 0.5282832503462027 -18 0.4729766845703125 4 Unmodified _YLESWGAARPF_ ENSG00000121281|ENST00000673801|ADCY7;ENST00000570187.1_1_16:50338327-50342394:+|nuORF 1.4551175022131473 0.3379923941668102 1 P 1 10 1.1092 0 0 0.12842 0 0 601.6242457176251 162.05637537174064 763.6806210893657 0 0 0 0 0 0 0 0 0 + P 0.12842 + + 2 + NaN NaN 141171.8 NaN 14841 3605 18444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18449 76.679 NaN 227370 35 0 26365 0.261 + 34547 YPIYDVLQM 9 73 579.2814517187753 1156.5483505043505 2 579.2814331054688 MULTI HCD FTMS 0 0 0 18444 66553.2890625 0.6838060582845539 -1 0.03277587890625 5 Oxidation (M) _YPIYDVLQM(Oxidation (M))_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000493271.1_1_2:96945134-96947649:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 41.8396318013385 0.056899836730939755 1 V{I|L}Q{M(Oxidation (M))|F} 4 5 43.928 0 0 3.7982 0 0 651.2909743149788 0 651.2909743149788 0 28.214562785677657 0 0 0 1.3494850021680094 0 0 0 + V{I|L}Q{M(Oxidation (M))|F} 3.7982 + + 252 NaN NaN 124737.1 NaN 14842 3605 18444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18450 76.683 NaN 309150 35 0 32718 0.261 + 217 AEVLGLILRY 10 74 573.8478187446323 1145.6810845560644 2 573.8477783203125 MULTI HCD FTMS 0 0 0 18444 20713.30078125 0.2196453451352243 -2 0.06555938720703125 6 Unmodified _AEVLGLILRY_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 33.4449034751529 0.20229115034201947 1 {I|L}{I|L}RY 4 6 43.404 0 0 3.7885 0 0 582.3382023312582 0 582.3382023312582 0 20.21652514092061 0 0 0 1.6861818737241734 0 0 0 + {I|L}{I|L}RY 3.7885 + + 388 + NaN NaN 130640.8 NaN 14843 3605 18444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18452 76.688 NaN 1796700 35 0 131530 0.327 + 27139 SYMWTINNF 9 115 596.2603157106057 1190.5060784880113 2 596.2606201171875 MULTI HCD FTMS 0 0 0 18451 987050.375 0.8571762758829111 3 -0.0850372314453125 1 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 149.91393105778798 8.917243180786556E-06 1 {M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}NN{M(Oxidation (M))|F} 10 4 + 76.102 0 0 6.3924 6.3924 85.263 0 0 0 32.57393098725139 0.3368714652862792 0.3368714652862792 3.252023584702542 0 2.412437995416459 0 0.6549471895720984 2.0356668758921828 {M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}NGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}CD{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}GGN{M(Oxidation (M))|F};{M(Oxidation (M))|F}CD{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}NGG{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E{I|L}NN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NGG{M(Oxidation (M))|F};{M(Oxidation (M))|F}CD{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}GGN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GGN{M(Oxidation (M))|F} 6.3924;6.1193;6.0023;5.7828;5.6226;5.5096;5.3317;5.2289;5.013;4.9864 -;-;+;-;-;-;-;-;-;- + 10425 + NaN NaN 361256.7 NaN 14844 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18453 76.692 NaN 838390 35 0 128580 0.261 + 35504 YYFSKLIEF 9 84 605.3131340877388 1208.6117152422776 2 605.3133544921875 MULTI HCD FTMS 0 0 0 18451 461633.9375 0.0799432225781439 10 -0.27414703369140625 2 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 90.13494162714682 0.004522430935000059 1 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 97.93 0 0 8.1027 8.1027 92.848 0 0 0 9.318722087674658 9.318722087674658 9.318722087674658 11.00833760139686 0 2.579689690656103 2 0.6549471895720985 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}YY{M(Oxidation (M))|F}[KS]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YV]{I|L}[KT]Y{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}YY[KS]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}[EP][WY]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}YY[KA]Y{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}[EP][W{I|L}]Y{M(Oxidation (M))|F} 8.1027;7.1918;6.4719;0.61214;0.5641;0.2597;0.24216;0.17951;0.058608 +;-;-;-;-;-;-;-;- + 689 NaN NaN 229663.1 NaN 14845 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18454 76.696 NaN 619560 35 0 54173 0.261 + 25883 SMTRYFYLF 9 96 614.2962758909922 1226.5779988487843 2 614.2973022460938 MULTI HCD FTMS 0 0 0 18451 286135.40625 0.23707437557408698 8 -0.221832275390625 3 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 43.77239144664712 0.04802738721622131 1 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 7 + 76.321 0 0 6.2223 6.2223 83.605 0 0 0 22.12144052772942 8.520599913279625 8.520599913279625 0.45757490560674796 0 0.5 1.5228787452803376 0.805462187404089 0.9163865622122673 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV{[TV]|[{I|L}S]}D{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[Y{I|L}][WQ]{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F};[Y{I|L}][WH]{[DA]|[EG]}Y{I|L}{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};[Y{I|L}][WQ][RD]S{I|L}{M(Oxidation (M))|F};[Y{I|L}][WH][YV]S{I|L}{M(Oxidation (M))|F};[Y{I|L}][WH]{[DA]|[EG]}{I|L}Y{M(Oxidation (M))|F} 6.2223;6.185;4.4188;3.9774;3.4463;3.3953;3.1994;2.7558;2.4178;2.308 -;-;-;-;-;-;-;-;-;- 1554 NaN NaN 174590.2 NaN 14846 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18455 76.699 NaN 498390 35 0 40803 0.261 + 11351 IYNGKLFDLL 10 97 598.3396289719675 1194.664705010735 2 598.3396606445312 MULTI HCD FTMS 0 0 0 18451 230589.765625 0.029202388069218557 23 -0.5976943969726562 4 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 87.25819977447905 0.0012128544035916314 1 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 69.867 0 0 5.8483 5.8483 86.915 0 0 0 15.173967513468327 14.142718030110487 14.142718030110487 9.164539485499247 0 1.8539171939081172 2 0.6747425010840047 0.23965182871044374 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[K{I|L}][NG]{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]T[TP]KNV{M(Oxidation (M))|F}{I|L};{I|L}Y[K{I|L}][NG]E{I|L}[{M(Oxidation (M))|F}V];[Y{I|L}]GGGK{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]NGK{I|L}E{I|L}[{M(Oxidation (M))|F}V];[Y{I|L}]T[TP]KGGV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}SKNV{M(Oxidation (M))|F}{I|L} 5.8483;5.0811;4.5781;3.7764;3.1881;3.0491;3.0093;2.6073;2.4209;2.3319 +;-;-;-;-;-;-;-;-;- + 2841 NaN NaN 161434.7 NaN 14847 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18456 76.702 NaN 507200 35 0 81798 0.261 + 26653 SYADQMFLL 9 69 552.2576368980135 1102.500720862827 2 552.2578125 MULTI HCD FTMS 0 0 0 18451 240549.109375 0.05774642727917236 -16 0.4415283203125 5 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 86.33184430468982 0.004622086694044132 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 84.619 0 0 7.6752 7.6752 93.442 0 0 0 4.137342758552691 63.192672072328904 4.137342758552691 16.197887582883936 0 2.274227503252014 0 0.805462187404089 0.6989700043360187 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[YG]{[DS]|[MA]|[CV]|TT}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS][YG]DA[MT];{[{M(Oxidation (M))|F}C]|[YS]}A[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{I|L} 7.6752;6.206;4.0593;2.1011;0.98927;0.48825 +;-;-;-;-;- + 271 NaN NaN 154714.6 NaN 14848 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18457 76.706 NaN 213150 35 0 17570 0.262 -1 0 62 465.7775000012219 929.5404470692438 2 465.7773742675781 MULTI HCD FTMS 0 0 0 18451 280709.5 0.8034932310419262 18 -0.50311279296875 6 NaN NaN 1 V 1 -1 2.4743 0 0 0.26618 0 0 603.3466737311563 224.09766565494377 827.4443393861001 0 0 0 0 0 0 0 0 0 V 0.26618 - 23 + NaN NaN 119047.6 NaN 14849 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18458 76.709 NaN 271640 35 0 48220 0.261 + 21340 PSWAYSTLLF 10 67 592.8025974236541 1183.5906419141081 2 592.8027954101562 MULTI HCD FTMS 0 0 0 18451 144604.65625 0.0633515326218125 28 -0.6598129272460938 7 Unmodified _PSWAYSTLLF_ ENST00000409185.5_1_2:131806791-131806905:-|nuORF 19.256988751693697 0.33098864134661865 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 29.45 0 0 2.4882 0 0 792.3449503836783 0 792.3449503836783 0 8.459427631194565 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.4882 - 30 NaN NaN 124956.3 NaN 14850 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18459 76.712 NaN 756580 35 0 179590 0.261 + -1 PTMMPTEMPF 10 90 607.2513390462037 1212.4881251592074 2 607.2528076171875 MULTI HCD FTMS 0 0 0 18451 91903.2421875 0.6233542622739207 2 -0.0555877685546875 8 2 Oxidation (M) _PTM(Oxidation (M))M(Oxidation (M))PTEMPF_ REV__ENST00000550722.5_1_12:112654658-112654908:-|nuORF 6.723162845929126 0.4397169348982109 1 [Y{I|L}][HD]TW[EC]{M(Oxidation (M))|F} 9 -1 + 30.625 0 0 2.5258 2.5258 81.507 0 0 0 5.976277995878547 0.48209952937228095 0.48209952937228095 5.976277995878547 0 0.3054621874040891 2 0 0 [Y{I|L}][HD]TW[EC]{M(Oxidation (M))|F};[WD]N{I|L}TW[EC]{M(Oxidation (M))|F};[Y{I|L}][HD]T[CS]NN{M(Oxidation (M))|F};[Y{I|L}][YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}[MT];[WD]N{I|L}T[CS]NN{M(Oxidation (M))|F};[WD]GG{I|L}TW[EC]{M(Oxidation (M))|F};[YV]{[YC]|[HE]}TW[EC]{M(Oxidation (M))|F};[Y{I|L}][YT][SG]M{M(Oxidation (M))|F}[MT];[WD]N{I|L}T[CS]GGN{M(Oxidation (M))|F};[WD]N{I|L}T[CS]NGG{M(Oxidation (M))|F} 2.5258;2.0329;1.8935;1.404;1.4006;1.2735;1.1623;1.118;0.64471;0.64471 -;-;-;-;-;-;-;-;-;- 1028 NaN NaN 189731.7 NaN 14851 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18460 76.716 NaN 224280 35 0 44961 0.262 + 18294 MPEDLVEAL 9 59 508.7515154624544 1015.4884779917088 2 508.7606506347656 MULTI HCD FTMS 0 0 0 18451 12117.7314453125 0.151533129409443 3 -0.0850372314453125 9 Unmodified _MPEDLVEAL_ ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;nc|ENSG00000133835|P51659-2|HSD17B4;nc|ENSG00000133835|P51659-3|HSD17B4 20.453626601364224 0.18364154288633264 1 HPEA{I|L} 5 5 38.928 0 0 3.8334 0 0 450.22081191230626 0 450.22081191230626 0 17.95880017344075 0 0 0 1 0 0 0 HPEA{I|L} 3.8334 - 99 NaN NaN 121142.5 NaN 14852 3606 18451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18462 76.72 NaN 485590 35 0 28985 0.327 + 12393 KPGKGARAE 9 89 457.2642199679544 912.5138870027088 2 457.264404296875 MULTI HCD FTMS 0 0 0 18461 490993.9375 0.6826347175307643 14 -0.3789215087890625 1 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 Q 1 9 10.401 0 0 1.1398 0 0 414.24635724512444 367.1975496881469 781.4439069332714 0 0 0 0 0 0.7302046884880937 0 0 0 Q 1.1398 - 25 + NaN NaN 152797.9 NaN 14853 3607 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18463 76.725 NaN 320170 35 0 38189 0.261 + 17108 LYLGLFNRL 9 60 554.8292679378519 1107.6439829425037 2 554.8294677734375 MULTI HCD FTMS 0 0 0 18461 220064.171875 0.1342702901802602 7 -0.1890716552734375 2 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 81.61307344734483 0.005330412723537057 1 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 10 2 + 89.123 0 0 8.0461 8.0461 88.292 0 0 0 74.5184409613313 9.131806016604358 9.131806016604358 3.521825181113627 0 2.6549471895720984 1.6989700043360187 0 0 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}Y{I|L}G{I|L}{I|L}[RN]{M(Oxidation (M))|F};[Y{I|L}]{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}G[Y{I|L}]{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}G[Y{I|L}]{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}G[Y{I|L}]{M(Oxidation (M))|F}{I|L}GGR{I|L} 8.0461;7.7282;7.3753;7.1213;7.0574;6.8882;6.8046;3.3269;3.0089;2.6561 -;+;-;+;-;-;-;-;-;- + 359 + NaN NaN 129343.9 NaN 14854 3607 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18464 76.728 NaN 684390 35 0 96754 0.261 + 29272 TYLPQSYLI 9 69 549.2976916842968 1096.5808304353934 2 549.2979125976562 MULTI HCD FTMS 0 0 0 18461 343280.28125 0.7087871987702362 -2 0.05513763427734375 3 Unmodified _TYLPQSYLI_ ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B 83.42873516780209 0.004742894019233849 1 [YT]{I|L}PQSY{I|L}{I|L} 9 0 + 89.147 0 0 8.1295 8.1295 93.155 0 0 0 12.04628427264403 15.418045140228656 12.04628427264403 12.04628427264403 0 2.4291746928241125 1.5228787452803376 1.0752574989159953 0 + + [YT]{I|L}PQSY{I|L}{I|L};[Y{I|L}]TPQSY{I|L}{I|L};[YT]{I|L}P[AG]SY{I|L}{I|L};[YT]{I|L}PQV[YT]{I|L};[YT][NP][{I|L}T]Y{I|L}{I|L};[YT]{I|L}[YG]{I|L}S[PA]{I|L};[Y{I|L}]TPQV[YT]{I|L};[YT]{I|L}PQV{I|L}[YT];[YT]VS{M(Oxidation (M))|F}{I|L}S[PA]{I|L};[Y{I|L}]T[YG]{I|L}S[PA]{I|L} 8.1295;7.031;5.8838;5.1657;4.7306;4.212;4.0671;4.0077;3.8189;3.1135 +;-;-;-;-;-;-;-;-;- + 457 NaN NaN 190031.4 NaN 14855 3607 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18465 76.732 NaN 219720 35 0 24581 0.261 + 18231 MPDVDFNL 8 48 475.7179751610404 949.4213973888808 2 475.7182312011719 MULTI HCD FTMS 0 0 0 18461 113770.359375 0.7450199011592809 -3 0.08791351318359375 4 Unmodified _MPDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 26.88365393820708 0.39599352634412927 1 VD{M(Oxidation (M))|F}N{I|L} 5 3 38.984 0 0 4.1061 0 0 343.11900527168126 0 343.11900527168126 0 25.728502661257977 0 0 0 0.5 0 0 0.3807196863200844 + VD{M(Oxidation (M))|F}N{I|L} 4.1061 + + 31 NaN NaN 128727.2 NaN 14856 3607 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18466 76.735 NaN 226270 35 0 27647 0.261 + 19131 NFSASRMLKSI 11 65 627.3377335550331 1252.660914176866 2 627.3380126953125 MULTI HCD FTMS 0 0 0 18461 118111.828125 1 0 0 5 Unmodified _NFSASRMLKSI_ REV__ENSG00000123908|ENST00000220592|AGO2;REV__ENST00000521325.1_1_8:141565925-141566322:-|nuORF;REV__nc|ENSG00000123908|Q9UKV8-2|AGO2 4.897010918128616 0.3974440401582579 1 {I|L}WS 3 -1 15.93 0 0 1.2717 0 0 183.08928768735183 680.3552340143186 863.4445217016705 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}WS 1.2717 - 42 + NaN NaN 117917.5 NaN 14857 3607 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18467 76.738 NaN 243250 35 0 26435 0.261 + 26815 SYIEHIFEI 9 76 575.7925321992703 1149.5705114653406 2 575.7921752929688 MULTI HCD FTMS 0 0 0 18461 74830.3671875 0.4195203018002917 16 -0.4410247802734375 6 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 43.85829265575387 0.04763305254408404 1 [YT]VH{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L} 9 4 + 44.191 0 0 3.8442 3.8442 86.863 0 0 0 14.938871815334949 3.7414365283145656 3.7414365283145656 14.960762528683698 0 0.6109243748081782 1.5228787452803376 0 0 [YT]VH{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}H{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};[YT]VY{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}C]|[YS]}{I|L};{[QN]|[E{I|L}]|[KN]}{[TV]|[{I|L}S]}{[WN]|[YH]}{M(Oxidation (M))|F}E{I|L};[YT]VHHH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}C]|[YS]}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HHH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3.8442;2.5427;2.4022;2.1249;1.7942;1.1008;0.49275 -;-;-;-;-;-;- 368 NaN NaN 138974.5 NaN 14858 3607 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18469 76.743 NaN 2180800 35 0 392270 0.327 + 28510 TPQFPDMIL 9 80 539.2679517160655 1076.5213504989308 2 539.268310546875 MULTI HCD FTMS 0 0 0 18468 1624024.875 0.08687856696854723 32 -0.7300643920898438 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 74.19965305603844 0.007729275404663812 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 72.787 0 0 6.7613 6.7613 84.936 0 0 0 1.0653741265442562 16.478174818886373 1.0653741265442562 1.0653741265442562 0 1.8807196863200843 0 1.066901560044258 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L} 6.7613;6.6624;6.0172;5.807;5.6754 -;+;-;-;- + 690 NaN NaN 425422.5 NaN 14859 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18470 76.748 NaN 422400 35 0 36482 0.261 + 35658 YYIMKISFI 9 69 589.320157481225 1176.62576202925 2 589.3190307617188 MULTI HCD FTMS 0 0 0 18468 216741.859375 0.09270642872120953 15 -0.4181976318359375 2 Unmodified _YYIMKISFI_ REV__ENST00000575815.5_1_17:3728158-3732552:-|nuORF 13.90604991867851 0.24021115267848145 1 YY{I|L} 3 -1 38.952 0 0 3.3105 0 0 0 734.3884411710309 734.3884411710309 5.012262311882765 0 0 0 0 0.8494850021680094 2 0 0 YY{I|L} 3.3105 + + 111 + NaN NaN 155817.3 NaN 14860 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18471 76.751 NaN 236770 35 0 87336 0.261 + 8826 HKNCYCESF 9 52 565.7236041398335 1129.4326553464668 2 565.7237548828125 MULTI HCD FTMS 0 0 0 18468 55727.79296875 0.045098170980467846 20 -0.5347366333007812 3 Unmodified _HKNCYCESF_ ENSG00000164619|ENST00000649409|BMPER 4.3292370932331545 0.3181982124262546 1 S{M(Oxidation (M))|F} 2 7 17.959 0 0 1.5901 0 0 877.3241277142656 0 877.3241277142656 0 3.4948500216800937 0 0 0 0 0 0 0 + S{M(Oxidation (M))|F} 1.5901 + + 32 + NaN NaN 122434.5 NaN 14861 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18472 76.754 NaN 156390 35 0 18080 0.262 + 23874 RSSEKLVR 8 61 487.7907707922295 973.5669886512591 2 487.7908020019531 MULTI HCD FTMS 0 0 0 18468 106400.25 0.9639083037951677 -2 0.0555877685546875 4 Unmodified _RSSEKLVR_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 4.3292370932331545 0.5355693454741696 1 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.3861 0 0 808.4877325250857 0 808.4877325250857 0 6.0475750727131565 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3861 - 24 + NaN NaN 104807.8 NaN 14862 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18473 76.758 NaN 213580 35 0 21937 0.261 -1 STCRPHRACV 10 50 622.2934086861002 1242.5722644390003 2 622.293701171875 MULTI HCD FTMS 0 0 0 18468 87745.265625 0.9971304319107478 1 -0.029449462890625 5 2 Carbamidomethyl (C) _STC(Carbamidomethyl (C))RPHRAC(Carbamidomethyl (C))V_ ENST00000411702.7_1_17:78355638-78356025:+|nuORF 13.042465956692817 0.38911719078024076 1 [Y{I|L}]YD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 10 -1 + 40.409 0 0 3.252 3.252 80.031 0 0 0 16.662640354288676 2.3490027126987982 2.3490027126987982 1.7609125905568135 0 1.579689690656103 2 0.5 0 [Y{I|L}]YD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y{[TV]|[{I|L}S]}[WD]H{M(Oxidation (M))|F};[YN]AH[RP]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[YN]AH[RP]{[DS]|[MA]|[CV]|TT}G{[QV]|[N{I|L}]|[RA]|[KV]} 3.252;3.1103;2.8312;1.6862;0.38614 -;-;-;-;- 103 + NaN NaN 117379.9 NaN 14863 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18474 76.761 NaN 255380 35 0 44807 0.261 + -1 YRAIDGQCIMC 11 49 644.778007357698 1287.541461782196 2 644.7781982421875 MULTI HCD FTMS 0 0 0 18468 32541.861328125 0.23324938850798188 -4 0.11074066162109375 6 Oxidation (M) _YRAIDGQCIM(Oxidation (M))C_ REV__ENSG00000070366|ENST00000263073|SMG6 7.608950283845883 0.38555039536024605 1 Q[QP]WV{M(Oxidation (M))|F} 6 -1 46.66 0 0 3.624 0 0 484.1462574689469 0 484.1462574689469 0 45.066504924811625 0 0 0 1.774227503252014 0 0 0.28872548999643577 Q[QP]WV{M(Oxidation (M))|F} 3.624 - 37 NaN NaN 117364 NaN 14864 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18475 76.764 NaN 249870 35 0 43779 0.263 + 35089 YVAGADLAEI 10 61 511.2637395582668 1020.5129261833337 2 511.2634582519531 MULTI HCD FTMS 0 0 0 18468 88950.34375 0.22088838319702728 -12 0.34102630615234375 7 Unmodified _YVAGADLAEI_ REV__ENSG00000144908|ENST00000393434|ALDH1L1;REV__nc|ENSG00000144908|O75891-2|ALDH1L1;REV__nc|ENSG00000144908|O75891-3|ALDH1L1 17.11289562659939 0.35104376501799556 1 SAE{I|L} 4 -1 36.67 0 0 3.5933 0 0 602.306444236525 0 602.306444236525 0 23.571231544599485 0 0 0 0.9247425010840047 0 0 0 SAE{I|L} 3.5933 - 121 NaN NaN 115080.2 NaN 14865 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18476 76.768 NaN 143760 35 0 19098 0.261 + 8316 GYAHWIGLF 9 50 532.271433708557 1062.5283144839138 2 532.2713012695312 MULTI HCD FTMS 0 0 0 18468 50223.5703125 0.5336773899404328 16 -0.4475250244140625 8 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 14.581692164780916 0.23437375358055648 1 G{I|L}{M(Oxidation (M))|F} 3 6 25.177 0 0 2.3696 0 0 727.3460258824529 0 727.3460258824529 0 19.69273760456403 0 0 0 0.5 0 0 0 + G{I|L}{M(Oxidation (M))|F} 2.3696 + + 8 NaN NaN 107042.8 NaN 14866 3608 18468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18478 76.773 NaN 996660 35 0 102800 0.327 + 7380 FVHDLVLYL 9 96 559.8158488922737 1117.6171448513473 2 559.8159790039062 MULTI HCD FTMS 0 0 0 18477 291406.75 0.15591561383261557 6 -0.1629486083984375 1 Unmodified _FVHDLVLYL_ CLTC-VMP1|12|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC 36.04419817259434 0.08350412372117409 1 Y{I|L}VA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 8 66.366 0 0 5.9382 0 0 131.09358224561987 0 131.09358224561987 0 28.48607366086368 0 0 0 1.2134679910804405 0 0.9386218330464625 0 Y{I|L}VA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.9382 - 2025 + NaN NaN 229468.4 NaN 14867 3609 18477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18479 76.777 NaN 620540 35 0 36570 0.261 + 32788 WSHDIFYIF 9 81 614.2962758909922 1226.5779988487843 2 614.792236328125 MULTI HCD FTMS 0 0 0 18477 133052.140625 0.12917765075701934 11 -0.3038482666015625 2 Unmodified _WSHDIFYIF_ REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense 34.10243960390752 0.09241788333544565 1 [YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F} 10 -1 + 74.773 0 0 6.0961 6.0961 83.459 0 0 0 31.760912590556813 45.13174048436923 31.760912590556813 0.5115252244738144 0 0.4247425010840047 1.5228787452803376 0.805462187404089 1.086696871556164 [YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AW[{I|L}A]{[ET]|[MV]}{I|L}{M(Oxidation (M))|F};[YN]A[HS]{[NV]|[RG]}Y{I|L}{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};[Y{I|L}]EEV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV[HA]{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F};[MT][KA]CV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[MT][KA]CV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]VEE{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F} 6.0961;6.0544;5.0582;4.7973;3.6663;3.1906;2.7347;2.5084;2.4631;2.4126 -;-;-;-;-;-;-;-;-;- 717 NaN NaN 180554.5 NaN 14868 3609 18477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18480 76.781 NaN 201380 35 0 54364 0.264 + 8724 HHGAGAFF 8 43 422.19824793462055 842.3819429360411 2 422.1986083984375 MULTI HCD FTMS 0 0 0 18477 40003.76171875 0.3006389915355771 -15 0.4226226806640625 3 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3029156917037 0 677.3029156917037 0 15 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 2 + NaN NaN 107585.6 NaN 14869 3609 18477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18481 76.784 NaN 97455 35 0 7778 0.261 -1 SYMQLMCHC 9 42 410.49162969268434 NaN 0 410.49176025390625 PEAK HCD FTMS 0 0 0 18477 9374.2861328125 0.2853755929872645 1 -0.01953125 4 2 Carbamidomethyl (C) _SYMQLMC(Carbamidomethyl (C))HC(Carbamidomethyl (C))_ ENST00000331457.8_1_22:31830005-31830233:+|nuORF 2.498486711656943 0.28313952434011336 1 G 1 -1 6.9897 0 0 0.85348 0 0 596.86886621955 162.0561922662719 758.9250584858219 0 0 0 0 0 0 0 0 0 G 0.85348 - 1 + NaN NaN 98871.7 NaN 14870 3609 18477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18482 76.787 NaN 102700 35 0 23541 0.261 -1 SFDGIIAMM 9 45 500.7277445664722 NaN 0 500.7275085449219 PEAK HCD FTMS 0 0 0 18477 38125.99609375 0.7341129067742335 -1 0.029449462890625 5 Oxidation (M) _SFDGIIAMM(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 16.942295170755138 0.2079222001251384 1 MA 2 -1 20.217 0 0 2.0228 0 0 165.04513649446943 629.2935274713499 794.3386639658193 0 0 0 0 0 0.9247425010840047 0 0 0 MA 2.0228 - 9 + NaN NaN 104826.6 NaN 14871 3609 18477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18484 76.792 NaN 1875200 35 0 184340 0.327 + 27029 SYLSSILRF 9 88 543.3030007276184 1084.5914485220367 2 543.3031005859375 MULTI HCD FTMS 0 0 0 18483 1406054.625 0.7680917396950273 2 -0.06158447265625 1 Unmodified _SYLSSILRF_ ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 129.77232118876745 0.0006187813247758304 1 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8 2 94.15 0 0 8.6806 0 0 193.07384171986536 0 193.07384171986536 0 69.6289755094822 0 0 0 2.6237125054200234 0 0.9916440611282626 0.3494850021680094 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8.6806 - 758 + NaN NaN 374630.6 NaN 14872 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18485 76.797 NaN 253220 35 0 10271 0.261 + 8117 GLLSAGRGGVA 11 73 479.2775206833423 956.5404884334846 2 479.2774963378906 MULTI HCD FTMS 0 0 0 18483 226841.453125 0.9399985069165827 4 -0.1172637939453125 2 Unmodified _GLLSAGRGGVA_ ENST00000265393.10_1_7:27779738-27779792:+|nuORF 5.296884461304476 0.39569033063702824 1 Q 1 11 8.9794 0 0 0.93874 0 0 502.2988940504752 323.1709383600219 825.4698324104971 0 0 0 0 0 0.5 0 0 0 Q 0.93874 - 45 + NaN NaN 131064.1 NaN 14873 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18486 76.8 NaN 388190 35 0 112690 0.261 + 30862 VQPPHLFLW 9 67 568.8165274348469 1135.6185019364937 2 568.8165893554688 MULTI HCD FTMS 0 0 0 18483 135617.0625 0.4429892541257575 3 -0.091094970703125 3 Unmodified _VQPPHLFLW_ ENSG00000174206|ENST00000398055|KICS2 28.486842064014134 0.11819662193267319 1 {M(Oxidation (M))|F}{I|L}W 3 6 26.414 0 0 2.326 0 0 671.3768177716812 0 671.3768177716812 0 6.972805581256196 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}{I|L}W 2.326 + + 90 NaN NaN 146891 NaN 14874 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18487 76.804 NaN 550720 35 0 33016 0.261 + 32789 WSHDIFYIF 9 79 614.2962758909922 1226.5779988487843 2 614.79443359375 MULTI HCD FTMS 0 0 0 18483 146425.125 0.14216121266784693 12 -0.3365478515625 4 Unmodified _WSHDIFYIF_ REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense 28.486842064014134 0.11819662193267319 1 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 -1 + 76.265 0 0 6.2177 6.2177 91.162 0 0 0 31.879617791072832 45.65430275289181 31.879617791072832 18.58349385648225 0 0.7614393726401688 1.6989700043360187 0.805462187404089 0.7742275032520141 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV[QT][QA]{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};[MT][KA]CV[WE]{I|L}{M(Oxidation (M))|F};[NP]H{[QG]|[NA]}VYY[H{I|L}];[NP]H{[{M(Oxidation (M))|F}H]|[RQ]}[C(Carbamidomethyl (C))R]{I|L}{M(Oxidation (M))|F} 6.2177;4.7026;4.2523;2.1168;0.82533;0.095676 -;-;-;-;-;- 528 NaN NaN 169080.6 NaN 14875 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18488 76.807 NaN 264330 35 0 31554 0.261 + 10573 IPLEEGELEL 10 62 571.3032664697377 1140.5919800062752 2 571.3031616210938 MULTI HCD FTMS 0 0 0 18483 61324.73828125 0.04224708122746465 14 -0.3985443115234375 5 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 17.11289562659939 0.35104376501799556 1 {I|L}E{I|L} 3 7 32.747 0 0 2.8711 0 0 767.3729349559461 0 767.3729349559461 0 0.8091592184437957 0 0 0 0.805462187404089 0 0 0 + {I|L}E{I|L} 2.8711 + + 88 NaN NaN 126240 NaN 14876 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18489 76.81 NaN 316010 35 0 20625 0.261 + -1 YSARCNAHF 9 60 563.2493946621686 1124.484236391137 2 563.24853515625 MULTI HCD FTMS 0 0 0 18483 126815.5078125 0.2532179380374553 -12 0.33121490478515625 6 Carbamidomethyl (C) _YSARC(Carbamidomethyl (C))NAHF_ REV__ENSG00000168546|ENST00000524240|GFRA2;REV__ENST00000306793.4_1_8:21550792-21640469:-|nuORF;REV__nc|ENSG00000168546|O00451-2|GFRA2;REV__nc|ENSG00000168546|O00451-3|GFRA2 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 21.427 0 0 1.9055 0 0 733.2359486310562 0 733.2359486310562 0 4.699915470362015 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 1.9055 - 77 NaN NaN 136245.6 NaN 14877 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18490 76.813 NaN 76541 35 0 10876 0.264 + 20414 PAAHSPHP 8 43 407.2039505109018 NaN 0 407.2040100097656 PEAK HCD FTMS 0 0 0 18483 43701.62109375 0.776662380575719 6 -0.16957855224609375 7 Unmodified _PAAHSPHP_ ENST00000497677.5_1_2:219264813-219268311:+|nuORF 0.7936320650641473 0.38822285293237185 1 C 1 8 6.9897 0 0 0.86038 0 0 302.58818559035984 403.76435266666255 706.3525382570224 0 0 0 0 0 0 0 0 0 C 0.86038 - 2 + NaN NaN 92460.6 NaN 14878 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18491 76.817 NaN 205460 35 0 18873 0.261 + 26240 SQASCSPQ 8 62 404.1699311090909 NaN 0 404.1700744628906 PEAK HCD FTMS 0 0 0 18483 21119.021484375 0.20664553072100414 15 -0.427825927734375 8 Unmodified _SQASCSPQ_ REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF 4.3292370932331545 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.86686 0 0 172.12077504756513 484.1379136444024 656.2586886919676 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.86686 - 8 + NaN NaN 126544.8 NaN 14879 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18492 76.82 NaN 151010 35 0 6376.7 0.261 + -1 YILCCRRLH 9 55 617.3207949716059 NaN 0 617.788818359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _YILC(Carbamidomethyl (C))CRRLH_ REV__ENST00000377291.2_1_5:175109963-175110044:+|nuORF 16.942295170755138 0.2079222001251384 1 {I|L}{I|L}W 3 -1 15.234 0 0 1.2359 0 0 163.06119335942418 654.3028658502561 817.3640592096804 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}W 1.2359 - 45 + NaN NaN 108483.8 NaN 14880 3610 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18494 76.825 NaN 7057400 35 0 840630 0.327 + 13420 KYPENFFLL 9 99 585.8132425088911 1169.6119320845821 2 585.8137817382812 MULTI HCD FTMS 0 0 0 18493 5831896.5 0.0294155744915232 44 -1.0621109008789062 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 89.778 0 0 7.6759 7.6759 88.625 0 0 0 5.568109453757657 16.478174818886373 5.568109453757657 5.568109453757657 0 2.586696871556164 0 0.2742275032520141 1.7346368802282015 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.6759;7.1998;6.8886;6.6064;6.4125;6.1781;6.1303;5.9884;5.8925;5.8191 +;-;-;-;-;-;-;-;-;- + 6105 NaN NaN 514466.7 NaN 14881 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18495 76.829 NaN 4252800 35 0 739830 0.214 + 5974 FPDQVAIQL 9 71 515.7819977459875 1029.549442558775 2 515.7822265625 MULTI HCD FTMS 0 0 0 18493 2586114.75 0.7564744472676096 3 -0.084442138671875 2 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 106.94017166704063 0.003441928997083001 1 QVA{I|L}Q{I|L} 6 3 76.988 0 0 7.4778 0 0 359.1481190412125 0 359.1481190412125 0 49.54033167468005 0 0 0 2.3494850021680094 0 0 1.5356668758921828 + QVA{I|L}Q{I|L} 7.4778 + + 452 NaN NaN 526306.9 NaN 14882 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18496 76.832 NaN 593590 35 0 63463 0.261 + -1 IMKRCPFT 8 85 526.7730005087975 1051.531448084395 2 526.7730712890625 MULTI HCD FTMS 0 0 0 18493 283172.3125 0.5728697909406234 1 -0.0287628173828125 3 Carbamidomethyl (C) _IMKRC(Carbamidomethyl (C))PFT_ REV__ENST00000524964.1_1_11:126164366-126174190:-|nuORF 30.224811164608877 0.3565035853404968 1 {I|L}MDQVA{I|L} 7 -1 85.342 0 0 8.116 0 0 0 278.1121920221313 278.1121920221313 70.73776696170043 0 0 0 0 2.004432191740108 1.6989700043360187 0.4247425010840047 0.2614393726401688 {I|L}MDQVA{I|L} 8.116 - 542 + NaN NaN 167962 NaN 14883 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18497 76.836 NaN 500430 35 0 47784 0.261 + 16527 LTLSCRISD 9 76 504.2627378097013 NaN 0 504.27423095703125 PEAK HCD FTMS 0 0 0 18493 20455.087890625 0.9368993700063704 -2 0.0523529052734375 4 Unmodified _LTLSCRISD_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 10.073929032068715 0.24642998803896465 1 {I|L}TVND{M(Oxidation (M))|F} 6 7 39.447 0 0 3.9192 0 0 131.07133251815168 183.11406885318596 314.18540137133766 0 0 0 0 0 0.28872548999643577 0 0.4247425010840047 1.2302046884880937 {I|L}TVND{M(Oxidation (M))|F} 3.9192 - 102 + NaN NaN 154458.8 NaN 14884 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18498 76.839 NaN 310900 35 0 16580 0.261 -1 CTSCHALFMP 10 98 612.255038172738 1222.4955234122758 2 612.2557983398438 MULTI HCD FTMS 0 0 0 18493 62949.75390625 0.5360672564254507 6 -0.16628265380859375 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))TSC(Carbamidomethyl (C))HALFMP_ sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2 10.823927491677226 0.4098686510432541 1 S{[MG]|[TS]}Y{[YD]|[{M(Oxidation (M))|F}M]}{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 10 -1 + 29.384 0 0 2.4036 2.4036 80.43 0 0 0 14.435749724493121 6.517412290202671 6.517412290202671 3.5218251811136234 0 1.524227503252014 0 0 0.6237125054200234 S{[MG]|[TS]}Y{[YD]|[{M(Oxidation (M))|F}M]}{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};M[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{[YD]|[{M(Oxidation (M))|F}M]}{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{[YD]|[{M(Oxidation (M))|F}M]}{I|L}GG{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 2.4036;2.1155;1.5064 -;-;- 237 + NaN NaN 137253.2 NaN 14885 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18499 76.842 NaN 166290 35 0 18769 0.264 + -1 KLVTDDNMAW 10 49 403.52690635450125 NaN 0 403.52691650390625 PEAK HCD FTMS 0 0 0 18493 22051.326171875 0.020234020286138178 32 -0.716400146484375 6 Oxidation (M) _KLVTDDNM(Oxidation (M))AW_ REV__ENSG00000129204|ENST00000574788|USP6;REV__nc|ENSG00000129204|P35125-3|USP6 3.072263186857199 0.33755485754653514 1 V 1 -1 6.9897 0 0 0.86824 0 0 114.73368725785413 588.2122286432249 702.945915901079 0 0 0 0 0 0 0 0 0 V 0.86824 + + 11 + NaN NaN 109352.8 NaN 14886 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18500 76.846 NaN 128950 35 0 10610 0.261 + 10030 IFASFNDTF 9 59 531.2504496126254 1060.4863462920507 2 531.2509155273438 MULTI HCD FTMS 0 0 0 18493 20383.4765625 0.3622715309534901 1 -0.0287628173828125 7 Unmodified _IFASFNDTF_ ENSG00000164587|ENST00000407193|RPS14;ENST00000519690.1_1_5:149827146-149827347:-|nuORF 79.59630418116434 0.005983006570063981 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AS{M(Oxidation (M))|F}NDT{M(Oxidation (M))|F} 9 0 + 77.273 0 0 7.2866 7.2866 92.153 0 0 0 7.147642715192504 71.78842824069392 7.147642715192504 13.015384402724592 0 2.1989700043360187 0 0.6861818737241735 0.3807196863200844 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AS{M(Oxidation (M))|F}NDT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AS{M(Oxidation (M))|F}GGDT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AS{M(Oxidation (M))|F}N[YE]A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AS{M(Oxidation (M))|F}GG[YE]A 7.2866;6.0593;4.4053;3.537 +;-;-;- + 141 NaN NaN 113666.1 NaN 14887 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18501 76.849 NaN 275770 35 0 29064 0.261 + 18219 MPDPWAEFHL 10 62 629.7817878598132 1257.5490227864263 2 629.7822875976562 MULTI HCD FTMS 0 0 0 18493 65543.578125 0.1622538867659228 -11 0.3118896484375 8 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 78.7280429016045 0.0072433801744089844 1 {M(Oxidation (M))|F}PDP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{M(Oxidation (M))|F}H{I|L} 10 0 + 62.075 0 0 4.9362 4.9362 90.231 0 0 0 41.105925060534574 9.131806016604358 9.131806016604358 32.862427068383184 0 2.6237125054200234 0 0.5994850021680094 0 + + {M(Oxidation (M))|F}PDP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{M(Oxidation (M))|F}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KS]{[QV]|[N{I|L}]|[RA]|[KV]}PDPE;{M(Oxidation (M))|F}PDP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[HK]{[QD]|[EN]|[WG]|[KD]|[RS]};{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[WT]|[RM]}[C(Carbamidomethyl (C))K]YKE 4.9362;2.323;1.9166;1.7189;0.32759 +;-;-;-;- + 240 + NaN NaN 121700.4 NaN 14888 3611 18493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18503 76.854 NaN 2012700 35 0 307300 0.327 + 26654 SYADQMFLL 9 88 552.2576368980135 1102.500720862827 2 552.2576904296875 MULTI HCD FTMS 0 0 0 18502 1563478.25 0.37532994115328 -10 0.28685760498046875 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 142.0795815696625 1.719916958814042E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 97.788 0 0 8.8697 8.8697 95.757 0 0 0 6.751736484954378 65.90411276716473 6.751736484954378 19.45046257204389 0 2.274227503252014 0 1.7971062485323517 1.024227503252014 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}V][YC(Carbamidomethyl (C))]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]PPDA[MT];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}QDA{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{[CT]|[{M(Oxidation (M))|F}G]}Q{I|L}{M(Oxidation (M))|F}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}QDA{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V]DA[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}P{[{M(Oxidation (M))|F}C]|[YS]}{I|L} 8.8697;7.1055;2.7818;2.5164;1.8656;1.6624;1.0117;0.9758;0.97534;0.86197 +;-;-;-;-;-;-;-;-;- + 1074 NaN NaN 406448.7 NaN 14889 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18504 76.858 NaN 721440 35 0 65287 0.261 + 27140 SYMWTINNF 9 87 596.2603157106057 1190.5060784880113 2 596.2606811523438 MULTI HCD FTMS 0 0 0 18502 418494.625 0.3634299456443805 9 -0.2455291748046875 2 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 134.295615338601 0.00034446139420701925 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NN{M(Oxidation (M))|F} 9 0 + 76.264 0 0 6.406 6.406 88.65 0 0 0 0.22833515693982065 42.97061018945996 0.22833515693982065 9.208187539523749 0 2.274227503252014 0 1.579689690656103 0.7302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NGG{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}NN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GGN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}NGG{M(Oxidation (M))|F};{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]C(Carbamidomethyl (C))E{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]C(Carbamidomethyl (C))E{I|L}NGG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}W[HD]{I|L}DM{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}W[HD]{I|L}MD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KQ]TW[EC]{M(Oxidation (M))|F} 6.406;5.6326;5.4074;5.376;5.0528;4.1474;3.7892;3.7161;3.6599;3.1628 +;-;-;-;-;-;-;-;-;- + 2647 NaN NaN 199502.2 NaN 14890 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18505 76.862 NaN 815440 35 0 278740 0.261 + 35505 YYFSKLIEF 9 64 605.3131340877388 1208.6117152422776 2 606.2998046875 MULTI HCD FTMS 0 0 0 18502 72502.109375 0.046433768199606235 17 -0.43154144287109375 3 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 27.628801355627647 0.12213550946336599 1 YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 33.901 0 0 2.8049 0 0 0 585.3418673150999 585.3418673150999 23.44335023848103 0 0 0 0 0.8494850021680094 2 0 0 YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8049 - 94 + NaN NaN 204010.1 NaN 14891 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18506 76.865 NaN 767330 35 0 98392 0.261 -1 METRLTASLF 10 75 592.8025974236541 1183.5906419141081 2 592.8239135742188 MULTI HCD FTMS 0 0 0 18502 67475.2578125 0.02956101903858164 34 -0.7719955444335938 4 Oxidation (M) _M(Oxidation (M))ETRLTASLF_ ENST00000511429.1_1_5:102326083-102338771:+|nuORF 12.240655878213236 0.39661705172222156 1 MVWET 5 -1 37.836 0 0 3.1967 0 0 0 534.2930875300185 534.2930875300185 8.529455342775169 0 0 0 0 0 0 0.28872548999643577 0 MVWET 3.1967 - 352 + NaN NaN 209211.2 NaN 14892 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18507 76.868 NaN 214860 35 0 16900 0.263 -1 0 59 465.7775000012219 929.5404470692438 2 465.77752685546875 MULTI HCD FTMS 0 0 0 18502 155915.640625 0.44628757436336514 24 -0.5222091674804688 5 NaN NaN 1 Q 1 -1 3.9794 0 0 0.4281 0 0 431.2727708716314 367.1968172662719 798.4695881379033 0 0 0 0 0 0 0 0 0 Q 0.4281 - 18 + NaN NaN 113599.2 NaN 14893 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18508 76.872 NaN 405130 35 0 29919 0.261 + 25884 SMTRYFYLF 9 81 614.2962758909922 1226.5779988487843 2 614.2969360351562 MULTI HCD FTMS 0 0 0 18502 108478.609375 0.089878770746231 14 -0.3922576904296875 6 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 29.081581746732265 0.1154664336125038 1 [YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F} 10 8 + 76.88 0 0 6.2679 6.2679 84.345 0 0 0 26.24434701741822 34.3073720250911 26.24434701741822 1.7609125905568135 0 0.7742275032520141 1.5228787452803376 0.75 0.5774509799928715 [YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]{M(Oxidation (M))|F};E{M(Oxidation (M))|F}A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]EEV{[TV]|[{I|L}S]}D{I|L}{M(Oxidation (M))|F};E{M(Oxidation (M))|F}AWV{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};[YN]AW{M(Oxidation (M))|F}[VP][PS]{M(Oxidation (M))|F};[Y{I|L}]EEV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[Y{I|L}][WH]{[DA]|[EG]}Y{I|L}{M(Oxidation (M))|F};E{M(Oxidation (M))|F}ARE{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F} 6.2679;6.1243;4.1923;3.8232;3.7226;3.6455;3.6224;3.5572;3.3304;3.2565 -;-;-;-;-;-;-;-;-;- 1740 NaN NaN 149473.2 NaN 14894 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18509 76.875 NaN 379830 35 0 44466 0.261 -1 LYMPKLLYF 9 79 602.3276654504947 NaN 0 602.3135986328125 PEAK HCD FTMS 0 0 0 18502 26678.953125 0.4165273325074928 -9 0.25408935546875 7 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 28.486842064014134 0.13043271994793734 1 TPYP{I|L} 5 -1 15.63 0 0 1.2996 0 0 165.10682262765096 463.2114657037719 628.3182883314229 0 0 0 0 0 0.1989700043360188 0 0.3807196863200844 0 TPYP{I|L} 1.2996 - 187 + NaN NaN 148483.7 NaN 14895 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18510 76.878 NaN 383910 35 0 35469 0.261 + 11352 IYNGKLFDLL 10 102 598.3396289719675 1194.664705010735 2 598.3401489257812 MULTI HCD FTMS 0 0 0 18502 124675.734375 0.015789205423602858 29 -0.6321868896484375 8 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 65.47368725323818 0.022948616544343086 1 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 77.955 0 0 6.5253 6.5253 88.076 0 0 0 25.470289513353066 60.32074997515272 25.470289513353066 9.164539485499247 0 1.9291746928241125 2 0.3252574989159953 0.3807196863200844 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]GGGK{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]N[{I|L}A]{[NV]|[RG]}Y{I|L}{I|L};[Y{I|L}]NGK{I|L}E{I|L}[{M(Oxidation (M))|F}V];[Y{I|L}][QA]V{[NV]|[RG]}Y{I|L}{I|L};[Y{I|L}]N[{I|L}A]{[NV]|[RG]}{I|L}Y{I|L};[Y{I|L}]GGGK{I|L}E{I|L}[{M(Oxidation (M))|F}V];[Y{I|L}][QA]V{[NV]|[RG]}{I|L}Y{I|L} 6.5253;5.7582;4.895;4.1279;3.4606;3.4588;2.8531;2.7425;2.6917;2.135 +;-;-;-;-;-;-;-;-;- + 2615 NaN NaN 155911.4 NaN 14896 3612 18502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18512 76.883 NaN 1752000 35 0 289780 0.327 + 28511 TPQFPDMIL 9 80 539.2679517160655 1076.5213504989308 2 539.2682495117188 MULTI HCD FTMS 0 0 0 18511 1202035.625 0.06430389962169886 37 -0.8469696044921875 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 55.50274090549119 0.023872834264864425 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 69.901 0 0 6.4932 6.4932 94.155 0 0 0 5.6424927368725974 49.53935460348782 5.6424927368725974 69.90085961185265 0 1.8252574989159953 0 1.0044321917401078 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 6.4932 - 620 NaN NaN 356297.8 NaN 14897 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18513 76.888 NaN 371690 35 0 21562 0.262 + 12394 KPGKGARAE 9 73 457.2642199679544 912.5138870027088 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18511 362637.59375 0.5041793644866894 20 -0.44818878173828125 2 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 Q 1 9 11.466 0 0 1.2565 0 0 414.24628687871194 367.1975496881469 781.4438365668589 0 0 0 0 0 0.6861818737241735 0 0 0 Q 1.2565 - 50 + NaN NaN 134167.1 NaN 14898 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18514 76.891 NaN 516900 35 0 61550 0.261 + 29273 TYLPQSYLI 9 71 549.2976916842968 1096.5808304353934 2 549.2979125976562 MULTI HCD FTMS 0 0 0 18511 249602.078125 0.5153653367948829 4 -0.10800933837890625 3 Unmodified _TYLPQSYLI_ ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B 89.40071534611396 0.0045416704840156395 1 [YT]{I|L}[QP]SY{I|L}{I|L} 9 0 + 85.697 0 0 7.8149 7.8149 92.833 0 0 0 12.525749891599531 16.478174818886373 12.525749891599531 12.525749891599531 0 2.1989700043360187 1.5228787452803376 0.9604093769761877 0 + + [YT]{I|L}[QP]SY{I|L}{I|L};[Y{I|L}]T[QP]SY{I|L}{I|L};[YT]{I|L}[QP]V[YT]{I|L};[YT]{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]}[{M(Oxidation (M))|F}V]{I|L};[YT]V{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[{M(Oxidation (M))|F}V]{I|L};[YT]{I|L}V[QP][YT]{I|L};[YT]{I|L}[QP]V{I|L}[YT];[Y{I|L}]T[QP]V[YT]{I|L};[YT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}V{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V[{M(Oxidation (M))|F}V] 7.8149;6.6726;4.9156;4.2369;4.1439;3.9106;3.7977;3.7733;3.2853;3.1922 +;-;-;-;-;-;-;-;-;- + 450 NaN NaN 162080 NaN 14899 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18515 76.895 NaN 334920 35 0 66273 0.261 + 25632 SGRRAAGMVL 10 46 509.28438533016487 1016.5542177271298 2 509.7767028808594 MULTI HCD FTMS 0 0 0 18511 18785.65234375 0.017958742065350915 25 -0.54132080078125 4 Unmodified _SGRRAAGMVL_ ENST00000307450.10_1_10:99377052-99379376:-|nuORF 7.101721422024254 0.4377131641736035 1 V{I|L} 2 8 19.464 0 0 1.9147 0 0 786.3873768537125 0 786.3873768537125 0 2.4742501084004687 0 0 0 0 0 0 0 + V{I|L} 1.9147 + + 48 NaN NaN 123608.4 NaN 14900 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18516 76.898 NaN 146990 35 0 16562 0.261 + 18232 MPDVDFNL 8 38 475.7179751610404 949.4213973888808 2 475.7178649902344 MULTI HCD FTMS 0 0 0 18511 69211.2109375 0.4532263923137528 3 -0.07848358154296875 5 Unmodified _MPDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 1 D{M(Oxidation (M))|F}N{I|L} 4 4 37.735 0 0 3.9745 0 0 442.18794448066564 0 442.18794448066564 0 27.277522261115408 0 0 0 0.5 0 0 0.3807196863200844 + D{M(Oxidation (M))|F}N{I|L} 3.9745 + + 23 NaN NaN 109327.5 NaN 14901 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18517 76.901 NaN 488040 35 0 86462 0.261 + 10223 IHLPHAPLF 9 62 522.8030192418171 1043.591485550434 2 522.802978515625 MULTI HCD FTMS 0 0 0 18511 124459.7734375 0.6677861652493421 -1 0.029510498046875 6 Unmodified _IHLPHAPLF_ REV__ENSG00000169570|ENST00000510708|DTWD2;REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF;REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2 20.871210003555333 0.18003371494288972 1 {I|L}[PA]{I|L}{M(Oxidation (M))|F} 5 -1 35.062 0 0 3.3597 0 0 484.2555103986344 0 484.2555103986344 0 24.203555389302522 0 0 0 1.7614393726401687 0 0 0 {I|L}[PA]{I|L}{M(Oxidation (M))|F} 3.3597 - 100 NaN NaN 150575.2 NaN 14902 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18518 76.905 NaN 591390 35 0 100600 0.261 + 17109 LYLGLFNRL 9 70 554.8292679378519 1107.6439829425037 2 554.829345703125 MULTI HCD FTMS 0 0 0 18511 86694.2734375 0.05289577650119222 13 -0.3627471923828125 7 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 74.42276476219924 0.007657080072768255 1 [Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}RN{I|L} 9 2 + 76.073 0 0 6.868 6.868 85.597 0 0 0 24.13734275855269 62.578147281456964 24.13734275855269 1.9897000433601875 0 2.3807196863200843 1.6989700043360187 0 0.3494850021680094 [Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}RN{I|L};[Y{I|L}]{I|L}G{I|L}R{M(Oxidation (M))|F}N{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}R{I|L}N;[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}RGG{I|L};[Y{I|L}]{I|L}G{I|L}R{M(Oxidation (M))|F}{I|L}N;[Y{I|L}]{I|L}G{I|L}R{M(Oxidation (M))|F}GG{I|L};[Y{I|L}]{I|L}{M(Oxidation (M))|F}G{I|L}RN{I|L};[Y{I|L}]{I|L}{M(Oxidation (M))|F}G{I|L}R{I|L}N;[Y{I|L}]{I|L}{M(Oxidation (M))|F}G{I|L}RGG{I|L} 6.868;6.6884;6.1217;6.0367;5.9421;5.857;4.7181;3.9719;3.8868 -;-;-;-;-;-;-;-;- 606 NaN NaN 170831.1 NaN 14903 3613 18511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18520 76.909 NaN 868440 35 0 223320 0.327 + 7025 FPYSYEVAL 9 74 544.7687492011228 1087.5229454690455 2 544.7686157226562 MULTI HCD FTMS 0 0 0 18519 590438.5625 0.23009531730688762 -8 0.221832275390625 1 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 39.957323273324995 0.06554068735427583 1 EVA{I|L} 4 5 49.993 0 0 4.5969 0 0 657.2785883314964 0 657.2785883314964 0 32.20114073819602 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + EVA{I|L} 4.5969 + + 176 NaN NaN 214113.8 NaN 14904 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18521 76.914 NaN 412420 35 0 63432 0.261 + 35506 YYFSKLIEF 9 66 605.3131340877388 1208.6117152422776 2 605.3134765625 MULTI HCD FTMS 0 0 0 18519 197304.71875 0.03416814442233102 18 -0.40291595458984375 2 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 63.227496030279354 0.01306643085373406 1 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 84.848 0 0 7.0203 7.0203 93.527 0 0 0 2.429928190999391 2.429928190999391 2.429928190999391 26.989700043360187 0 2.579689690656103 2 0 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY[KA]Y{I|L}{I|L}E{M(Oxidation (M))|F};YY[KA]{I|L}Y{I|L}E{M(Oxidation (M))|F} 7.0203;4.7872;4.3946 +;-;- + 187 NaN NaN 149960.6 NaN 14905 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18522 76.917 NaN 546000 35 0 37070 0.261 + 21807 QALLHKFDF 9 77 559.8033959450611 NaN 0 559.8160400390625 PEAK HCD FTMS 0 0 0 18519 8182.69970703125 0.6065427268449817 -1 0.0261688232421875 3 Unmodified _QALLHKFDF_ ENSG00000116745|ENST00000262340|RPE65 12.531546534597751 0.23452071659215576 1 Y{I|L}{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F}D 7 5 26.33 0 0 2.356 0 0 131.06946212163558 162.05632959537346 293.12579171700906 0 0 0 0 0 0 0 0.7614393726401688 0 Y{I|L}{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F}D 2.356 - 119 + NaN NaN 153519.9 NaN 14906 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18523 76.921 NaN 396850 35 0 32260 0.261 + 15200 LNHLVPDIAW 10 61 589.320157481225 1176.62576202925 2 589.3189086914062 MULTI HCD FTMS 0 0 0 18519 165719.59375 0.07088280847084145 21 -0.44731903076171875 4 Unmodified _LNHLVPDIAW_ REV__ENSG00000179002|ENST00000375371|TAS1R2 11.494710602746466 0.4035943721457025 1 YY{I|L}{I|L}[HV]{I|L}A 8 -1 44.831 0 0 3.8101 0 0 0 201.06348736333214 201.06348736333214 27.841087759491856 0 0 0 0 1.9247425010840047 1.6989700043360187 0 0 YY{I|L}{I|L}[HV]{I|L}A 3.8101 - 229 NaN NaN 152339.7 NaN 14907 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18524 76.924 NaN 718390 35 0 56264 0.261 + -1 VWQALCIEI 9 85 566.297318493246 1130.580084053292 2 567.8049926757812 MULTI HCD FTMS 0 0 0 18519 186911.953125 0.03247994841162096 -16 0.44847869873046875 5 Carbamidomethyl (C) _VWQALC(Carbamidomethyl (C))IEI_ REV__ENST00000419179.5_1_7:87838740-87846454:-|nuORF;REV__ENST00000486860.5_1_7:87839387-87846454:-|nuORF 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}DTA{I|L}AH{I|L}{M(Oxidation (M))|F} 9 -1 60.544 0 0 5.3551 0 0 97.05393203129695 0 97.05393203129695 0 -8.644870237789078 -8.644870237789078 0 0 0 0 0.6694451763165201 0 {M(Oxidation (M))|F}DTA{I|L}AH{I|L}{M(Oxidation (M))|F} 5.3551 - 1799 + NaN NaN 188913.1 NaN 14908 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18525 76.927 NaN 361780 35 0 59551 0.261 + 35258 YVRLGPGFFY 10 68 609.8187528290498 1217.6229527248995 2 610.8214721679688 MULTI HCD FTMS 0 0 0 18519 140626.671875 1 0 0 6 Unmodified _YVRLGPGFFY_ ENST00000222573.4_1_7:20371422-20403260:+|nuORF 10.823927491677226 0.4098686510432541 1 [YV]YYKQ{I|L}P 8 8 40.367 0 0 3.3152 0 0 0 160.0513510436214 160.0513510436214 21.15865011156764 0 0 0 0 0.2742275032520141 1.6989700043360187 0 0 [YV]YYKQ{I|L}P 3.3152 - 175 NaN NaN 147833.7 NaN 14909 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18526 76.931 NaN 532370 35 0 29656 0.261 -1 0 91 578.7131984896596 1155.411844046119 2 578.7139282226562 MULTI HCD FTMS 0 0 0 18519 150398.140625 0.4935069016759836 -8 0.221832275390625 7 NaN NaN 1 {I|L}Q[R{M(Oxidation (M))|F}] 4 -1 9.0411 0 0 0.7825 0 0 593.0897748095941 0 593.0897748095941 0 -2.1840862742902623 -2.1840862742902623 0 0 0 0 0 0 {I|L}Q[R{M(Oxidation (M))|F}] 0.7825 - 920 + NaN NaN 179465.7 NaN 14910 3614 18519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18528 76.936 NaN 203600 35 0 17666 0.327 + 11813 KELNQRIG 8 62 479.2775206833423 956.5404884334846 2 479.2774963378906 MULTI HCD FTMS 0 0 0 18527 157011.671875 0.6506338903130159 9 -0.255126953125 1 Unmodified _KELNQRIG_ ENSG00000166669|ENST00000562102|ATF7IP2;nc|ENSG00000166669|Q5U623-2|ATF7IP2 4.75600775471527 0.5349361699807423 1 V 1 8 9.6041 0 0 1.004 0 0 586.318967930488 268.1240633600219 854.4430312905099 0 0 0 0 0 0.5 0 0 0 V 1.004 - 45 + NaN NaN 117019.8 NaN 14911 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18529 76.94 NaN 761490 35 0 70102 0.261 -1 VMDVAFVQF 9 78 536.2634565042364 NaN 0 536.253662109375 PEAK HCD FTMS 0 0 0 18527 57932.38671875 0.93938095462501 2 -0.05568695068359375 2 Oxidation (M) _VM(Oxidation (M))DVAFVQF_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 29.081581746732265 0.1264406993618811 1 VQ 2 -1 19.715 0 0 1.8416 0 0 678.3062756370153 162.05611597232658 840.3623916093419 0 0 0 0 0 1.2134679910804405 0 0 0.28872548999643577 VQ 1.8416 + + 390 + NaN NaN 196569.9 NaN 14912 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18530 76.944 NaN 721120 35 0 155670 0.261 + 11656 IYVNLIFLL 9 71 554.3441534132147 1106.6737538932293 2 554.34423828125 MULTI HCD FTMS 0 0 0 18527 206500.421875 0.2921408308684001 -7 0.1923980712890625 3 Unmodified _IYVNLIFLL_ REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF 28.486842064014134 0.11819662193267319 1 [Y{I|L}]VV[Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 37.086 0 0 3.3511 3.3511 82.119 0 0 0 12.560443407534628 3.7042924767114727 3.7042924767114727 6.249387366083003 0 1.3494850021680094 1.6989700043360187 0 0 [Y{I|L}]VV[Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]VV[KP]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T][Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T][KP]Y{I|L}{I|L} 3.3511;2.7864;0.93299;0.36829 -;-;-;- 172 NaN NaN 181682.5 NaN 14913 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18531 76.947 NaN 536280 35 0 39570 0.261 + 32790 WSHDIFYIF 9 81 614.2962758909922 1226.5779988487843 2 614.7926635742188 MULTI HCD FTMS 0 0 0 18527 133494.5625 0.12960718926867015 17 -0.37676239013671875 4 Unmodified _WSHDIFYIF_ REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense 28.486842064014134 0.11819662193267319 1 [YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{I|L}{M(Oxidation (M))|F} 10 -1 + 78.95 0 0 6.4366 6.4366 84.676 0 0 0 27.62402212786767 16.53212513775344 16.53212513775344 1.7609125905568135 0 0.805462187404089 1.6989700043360187 0.7742275032520141 0.8539171939081173 [YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AW[H{I|L}]Y{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AWV{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AWV[WQ]{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AWV{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AW[WR]A{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AW[H{I|L}]{I|L}Y{M(Oxidation (M))|F} 6.4366;6.2931;6.2558;4.8035;4.1845;3.6173;3.4737;3.4364;3.3879;3.1456 -;-;-;-;-;-;-;-;-;- 618 NaN NaN 162451.1 NaN 14914 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18532 76.95 NaN 258080 35 0 49455 0.263 + 365 AHLKRGRH 8 72 487.7907707922295 973.5669886512591 2 487.7908935546875 MULTI HCD FTMS 0 0 0 18527 91812.2734375 0.8317519249881344 5 -0.140899658203125 5 Unmodified _AHLKRGRH_ ENST00000412341.6_1_1:249150017-249153213:-|nuORF 2.8892196856762586 0.5377058178582064 1 [DP]Q 3 8 7.4473 0 0 0.76495 0 0 0 630.4067890683092 630.4067890683092 1.8740810491245004 0 0 0 0 0 0 0 0 [DP]Q 0.76495 - 68 NaN NaN 124689.8 NaN 14915 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18533 76.954 NaN 161730 35 0 16691 0.261 + 26816 SYIEHIFEI 9 52 575.7925321992703 1149.5705114653406 2 575.7930908203125 MULTI HCD FTMS 0 0 0 18527 57734.97265625 0.323678662333593 24 -0.501739501953125 6 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 36.12702656103203 0.08312389501731911 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}HE{I|L}{M(Oxidation (M))|F}E{I|L} 9 2 + 34.375 0 0 2.9903 2.9903 81.949 0 0 0 3.1678344300285914 12.86516008739384 3.1678344300285914 6.465912507003612 0 1.0484550065040281 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}HE{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VHE{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[WE][KG]{M(Oxidation (M))|F}E{I|L} 2.9903;2.4278;1.7927 -;-;- 222 NaN NaN 109617.8 NaN 14916 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18534 76.957 NaN 157730 35 0 21252 0.261 + -1 YRAIDGQCIMC 11 54 644.778007357698 1287.541461782196 2 644.77978515625 MULTI HCD FTMS 0 0 0 18527 60148.52734375 0.43112491572385647 3 -0.0917816162109375 7 Oxidation (M) _YRAIDGQCIM(Oxidation (M))C_ REV__ENSG00000070366|ENST00000263073|SMG6 5.296884461304476 0.39569033063702824 1 Q[QP]WV{M(Oxidation (M))|F} 6 -1 41.297 0 0 3.2075 0 0 484.14717299629064 0 484.14717299629064 0 34.307743387832026 0 0 0 1.3494850021680094 0 0 0.23965182871044374 Q[QP]WV{M(Oxidation (M))|F} 3.2075 - 30 NaN NaN 105476.5 NaN 14917 3615 18527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18536 76.962 NaN 4966200 35 0 533960 0.327 + 13421 KYPENFFLL 9 107 585.8132425088911 1169.6119320845821 2 585.81396484375 MULTI HCD FTMS 0 0 0 18535 3863382.75 0.019486563774218344 49 -1.2008895874023438 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.689 0 0 8.0958 8.0958 90.169 0 0 0 7.870156338638594 16.478174818886373 7.870156338638594 7.870156338638594 0 2.5356668758921828 0 0.25 1.9208187539523753 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 8.0958;7.4229;7.3085;6.8472;6.6356;6.4012;6.2229;6.2115;6.1743;6.1209 +;-;-;-;-;-;-;-;-;- + 6778 NaN NaN 537149.9 NaN 14918 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18537 76.966 NaN 1110400 35 0 142900 0.261 + 29284 TYLPTSPLL 9 75 502.7868929225129 1003.5592329118258 2 502.7869873046875 MULTI HCD FTMS 0 0 0 18535 469201.71875 0.8474030485492938 -4 0.10799407958984375 2 Unmodified _TYLPTSPLL_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 115.6920309560759 0.002013163348980568 1 [YT]{I|L}PTSP{I|L}{I|L} 9 0 + 89.184 0 0 8.8868 8.8868 96.207 0 0 0 17.30327215271494 16.478174818886373 16.478174818886373 23.239087409443187 0 2.4604093769761874 1.5228787452803376 1.1549471895720984 0 + + [YT]{I|L}PTSP{I|L}{I|L};[Y{I|L}]TPTSP{I|L}{I|L};[{I|L}P][YT]TSP{I|L}{I|L};[YT]T[{I|L}P]SP{I|L}{I|L} 8.8868;6.5711;6.0729;6.0442 +;-;-;- + 323 NaN NaN 249973 NaN 14919 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18538 76.97 NaN 711190 35 0 63885 0.261 -1 QMCCGPFLL 9 86 563.2493946621686 1124.484236391137 2 563.2487182617188 MULTI HCD FTMS 0 0 0 18535 253407.375 0.5059893232920472 -6 0.16957855224609375 3 2 Carbamidomethyl (C) _QMC(Carbamidomethyl (C))C(Carbamidomethyl (C))GPFLL_ ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9-3|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130 23.1484247019978 0.1603590852062899 1 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 46.075 0 0 4.0974 0 0 250.09532363105626 0 250.09532363105626 0 35.10553829690615 0 0 0 2.1549471895720984 0 0.3054621874040891 0 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 4.0974 - 187 NaN NaN 194086.6 NaN 14920 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18539 76.973 NaN 387990 35 0 57994 0.261 + 6703 FPPLYEDIM 9 83 570.7675378282402 1139.5205227232802 2 570.7678833007812 MULTI HCD FTMS 0 0 0 18535 59110.41015625 0.39926276993168114 -4 0.10799407958984375 4 Oxidation (M) _FPPLYEDIM(Oxidation (M))_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 67.34385681178166 0.00994769994983633 1 YED{I|L}{M(Oxidation (M))|F} 5 4 64.949 0 0 5.6996 0 0 454.25715823414083 0 454.25715823414083 0 57.870156338638594 0 0 0 2.4247425010840047 0 0.5752574989159953 0 + YED{I|L}{M(Oxidation (M))|F} 5.6996 + + 101 + NaN NaN 157985.5 NaN 14921 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18540 76.976 NaN 262940 35 0 34258 0.261 + 16220 LPVVDFNEM 9 59 532.2600035885426 1062.5054542438852 2 532.2717895507812 MULTI HCD FTMS 0 0 0 18535 31149.7578125 0.4909226559944662 -2 0.05231475830078125 5 Unmodified _LPVVDFNEM_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 36.12702656103203 0.08312389501731911 1 [{I|L}P]V[HQ]{M(Oxidation (M))|F}P{I|L} 8 5 34.442 0 0 3.2416 0 0 0 127.9544108161232 127.9544108161232 8.728721920568248 0 0 0 0 0.3807196863200844 1.3010299956639813 0 0 [{I|L}P]V[HQ]{M(Oxidation (M))|F}P{I|L} 3.2416 - 168 NaN NaN 126157.3 NaN 14922 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18541 76.98 NaN 186190 35 0 21502 0.261 + 33299 YFQISPCDEF 10 55 624.7676520081352 1247.5207510830703 2 624.7683715820312 MULTI HCD FTMS 0 0 0 18535 58533.921875 0.1510831960969563 -4 0.10799407958984375 6 Unmodified _YFQISPCDEF_ REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF 15.248480904072842 0.3684828712757339 1 DVQCVDE{M(Oxidation (M))|F} 8 -1 65.808 0 0 5.2751 0 0 294.1210194318375 0 294.1210194318375 0 51.11555346200056 0 0 0 0 0 0.805462187404089 0.3252574989159953 DVQCVDE{M(Oxidation (M))|F} 5.2751 - 239 NaN NaN 104812.9 NaN 14923 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18542 76.983 NaN 311930 35 0 47813 0.264 + -1 LAGAKRHM 8 46 450.24636169764705 NaN 0 450.2343444824219 PEAK HCD FTMS 0 0 0 18535 9648.6357421875 0.46574238187450856 -2 0.05231475830078125 7 Oxidation (M) _LAGAKRHM(Oxidation (M))_ REV__ENSG00000235034|ENST00000425202|C19orf81 11.114462752807354 0.38822285293237185 1 {I|L}AV[MD]{I|L} 6 -1 16.911 0 0 1.8822 0 0 128.08207542868792 125.0355929010375 253.1176683297254 0 0 0 0 0 0 0 0 0 {I|L}AV[MD]{I|L} 1.8822 - 28 + NaN NaN 127025.2 NaN 14924 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18543 76.986 NaN 183090 35 0 17372 0.261 + 29145 TYIKFVNLF 9 56 572.8238452706513 1143.6331376081025 2 573.325439453125 MULTI HCD FTMS 0 0 0 18535 32381.689453125 0.2204677701111079 12 -0.3161773681640625 8 Unmodified _TYIKFVNLF_ ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;nc|ENSG00000183020|O94973-3|AP2A2 26.268140514670165 0.13340543277302316 1 [YT]{I|L} 3 6 35.458 0 0 3.1004 0 0 0 763.4137056940061 763.4137056940061 10.681277912325342 0 0 0 0 0.8494850021680094 2 0 0 + [YT]{I|L} 3.1004 + + 56 + NaN NaN 113103.2 NaN 14925 3616 18535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18545 76.991 NaN 3841000 35 0 577240 0.327 + 26655 SYADQMFLL 9 106 552.2576368980135 1102.500720862827 2 552.2578125 MULTI HCD FTMS 0 0 0 18544 2921968.75 0.701450345720654 -5 0.13751983642578125 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 183.0388951392065 8.687204194748383E-13 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.153 0 0 8.54 8.54 93.413 0 0 0 9.621892823592972 55.893943874995166 9.621892823592972 10.330367462864885 0 2.25 0 2.084121882396211 0.6989700043360187 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[DA]|[EG]}YSQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[DA]|[EG]}YTN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[DA]|[EG]}YS[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[DA]|[EG]}YTGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QDS{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEVVC(Carbamidomethyl (C))Y{I|L} 8.54;7.603;7.0708;6.7479;6.1338;5.8109;5.2787;4.3417;3.1017;2.5859 +;-;-;-;-;-;-;-;-;- + 3471 NaN NaN 622005.1 NaN 14926 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18546 76.996 NaN 3212700 35 0 555010 0.261 + 5975 FPDQVAIQL 9 79 515.7819977459875 1029.549442558775 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18544 2031029.375 0.5941042731523818 9 -0.25473785400390625 2 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 118.0683919894846 0.0016252157255221692 1 QVA{I|L}Q{I|L} 6 3 76.305 0 0 7.4115 0 0 359.14827162910314 0 359.14827162910314 0 49.73828478979911 0 0 0 2.3494850021680094 0 0 1.4674165578762484 + QVA{I|L}Q{I|L} 7.4115 + + 692 NaN NaN 566998.8 NaN 14927 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18547 76.999 NaN 1448300 35 0 181970 0.261 + 26794 SYIDLLQRF 9 87 577.813754900544 1153.612956867888 2 577.8140258789062 MULTI HCD FTMS 0 0 0 18544 620757.4375 0.3992641519597557 -5 0.13751983642578125 3 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 191.38036244623 2.972967745938989E-13 1 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8 2 107.8 0 0 9.3448 0 0 193.07427731890624 0 193.07427731890624 0 98.59488801648581 0 0 0 3.0356668758921828 0 0.6109243748081782 1.9846368802282015 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 9.3448 - 1780 + NaN NaN 303159.6 NaN 14928 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18548 77.003 NaN 461720 35 0 47496 0.261 + -1 FPMNMKRL 8 70 526.7730005087975 1051.531448084395 2 526.7731323242188 MULTI HCD FTMS 0 0 0 18544 211119.625 0.4271040991594572 7 -0.19944000244140625 4 Oxidation (M) _FPM(Oxidation (M))NMKRL_ REV__ENSG00000164500|ENST00000297001|SPATA48 26.34127834903884 0.3999841173197873 1 {I|L}MDQVA{I|L} 7 -1 80.438 0 0 7.6496 0 0 0 278.11203943424067 278.11203943424067 57.25009480581832 0 0 0 0 1.610924374808178 1.6989700043360187 0.3807196863200844 0.3054621874040891 {I|L}MDQVA{I|L} 7.6496 - 288 + NaN NaN 164941.4 NaN 14929 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18549 77.006 NaN 974770 35 0 266190 0.261 + 6504 FPIPLINRL 9 79 541.8398072397072 1081.6650615462142 2 541.8396606445312 MULTI HCD FTMS 0 0 0 18544 322737.1875 0.8467432296796924 -3 0.08184051513671875 5 Unmodified _FPIPLINRL_ ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 64.23631603340823 0.01165516075559909 1 {I|L}M{I|L}P{I|L}{I|L}{I|L} 7 4 66.234 0 0 6.1233 0 0 0 285.1254061334594 285.1254061334594 46.568364597629426 0 0 0 0 1.8494850021680094 1.6989700043360187 0 0 {I|L}M{I|L}P{I|L}{I|L}{I|L} 6.1233 - 241 + NaN NaN 245704.1 NaN 14930 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18550 77.009 NaN 544130 35 0 45458 0.261 + 5515 FLDGNELTL 9 84 511.2637395582668 1020.5129261833337 2 511.263916015625 MULTI HCD FTMS 0 0 0 18544 248108.4375 0.6161220890944077 -3 0.08184051513671875 6 Unmodified _FLDGNELTL_ ENSG00000213719|ENST00000375784|CLIC1 118.0683919894846 0.0016252157255221692 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{I|L}T{I|L} 9 0 + 64.42 0 0 6.3125 6.3125 92.594 0 0 0 4.762036441594191 44.24288105545884 4.762036441594191 33.50833760139686 0 2.024227503252014 0 0.7302046884880937 1.055462187404089 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{I|L}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NP]{[DS]|[MA]|[CV]|TT}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG][{I|L}T]E{I|L};[{I|L}T]{I|L}[W{I|L}][C(Carbamidomethyl (C))C]{I|L};[{I|L}T]Y{[NV]|[RG]}[HQ]{M(Oxidation (M))|F};[{I|L}T]Y{[NV]|[RG]}A{[HG]|PP}{M(Oxidation (M))|F} 6.3125;3.029;2.611;1.4152;0.44686;0.25355 +;-;-;-;-;- + 998 NaN NaN 188968 NaN 14931 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18551 77.013 NaN 527220 35 0 52449 0.261 + 18220 MPDPWAEFHL 10 83 629.7817878598132 1257.5490227864263 2 629.78173828125 MULTI HCD FTMS 0 0 0 18544 213661.3125 0.5289210536922216 -5 0.13751983642578125 7 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 118.89474601620944 4.021404175452203E-05 1 {M(Oxidation (M))|F}PDPWAE{M(Oxidation (M))|F}H{I|L} 10 0 + 71.948 0 0 5.7213 5.7213 90.299 0 0 0 45.01979729363555 8.507112333562858 8.507112333562858 17.941453415473205 0 2.774227503252014 0 0.6861818737241735 0 + + {M(Oxidation (M))|F}PDPWAE{M(Oxidation (M))|F}H{I|L};[YN]{I|L}[YC(Carbamidomethyl (C))]E{M(Oxidation (M))|F}H{I|L};{M(Oxidation (M))|F}PDP{[DA]|[EG]}A[PG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKKWPDPE;[QP]{[ET]|[MV]}EEE{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{M(Oxidation (M))|F}AWPDPE;[H{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AWPDPE;{M(Oxidation (M))|F}PDP{[DA]|[EG]}[QP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}E[PS]{[MG]|[TS]}DPE;[QP]{[ET]|[MV]}A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PDPE 5.7213;4.2946;2.9506;2.8372;2.8133;2.5491;2.2104;2.0273;1.3678;1.2152 +;-;-;-;-;-;-;-;-;- + 642 + NaN NaN 167555.1 NaN 14932 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18552 77.016 NaN 279520 35 0 26748 0.261 + 15918 LPLWYLDCLA 10 75 603.8155572368748 1205.6165615405496 2 603.8153076171875 MULTI HCD FTMS 0 0 0 18544 143967.03125 1 0 0 8 Unmodified _LPLWYLDCLA_ REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF 20.453626601364224 0.3197956946484955 1 {I|L}P{I|L}DV 5 -1 54.425 0 0 4.5143 0 0 0 665.2777193658811 665.2777193658811 48.94016261540408 0 0 0 0 1.274227503252014 0 0.8494850021680094 0 {I|L}P{I|L}DV 4.5143 - 176 + NaN NaN 134546 NaN 14933 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18553 77.019 NaN 533230 35 0 50907 0.261 -1 LDWGMEEVM 9 73 571.2324802516637 1140.4504075701273 2 571.224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Oxidation (M) _LDWGM(Oxidation (M))EEVM(Oxidation (M))_ ENSG00000136709|ENST00000322313|WDR33 16.942295170755138 0.21397866736869717 1 YED{I|L}{M(Oxidation (M))|F} 5 -1 41.643 0 0 3.6514 0 0 455.1884318408676 0 455.1884318408676 0 20.84097062732033 0 0 0 0 0 0.6694451763165201 0 YED{I|L}{M(Oxidation (M))|F} 3.6514 - 75 + NaN NaN 177742 NaN 14934 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18554 77.023 NaN 393030 35 0 54139 0.261 + 24078 RYAIAFPLI 9 66 532.318657758613 1062.6227625840258 2 532.3186645507812 MULTI HCD FTMS 0 0 0 18544 90840.3046875 0.5789279270128815 -5 0.13751983642578125 10 Unmodified _RYAIAFPLI_ ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L 26.88365393820708 0.12808753336095696 1 [{I|L}P]VHGA{M(Oxidation (M))|F}P{I|L}{I|L} 10 5 + 70.684 0 0 6.6518 6.6518 86.398 0 0 0 21.249387366083 53.69432069869495 21.249387366083 4.648167490521175 0 1.6069758080123702 1.3979400086720375 0 0 [{I|L}P]VHGA{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P]VHQ{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P][HA][VG]{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P][HA][W{I|L}]T{I|L}{I|L} 6.6518;6.2144;4.6739;2.4603 -;-;-;- 215 NaN NaN 149775.6 NaN 14935 3617 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18556 77.027 NaN 1147300 35 0 155380 0.327 + 3426 EFLAALYNPF 10 70 592.8025974236541 1183.5906419141081 2 592.8240356445312 MULTI HCD FTMS 0 0 0 18555 81291.6875 0.035614019120068535 40 -0.9449081420898438 1 Unmodified _EFLAALYNPF_ ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-2|TNFAIP8;nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-4|TNFAIP8 12.240655878213236 0.39661705172222156 1 MVWETVD 7 10 51.948 0 0 4.389 0 0 0 320.1981600397094 320.1981600397094 23.21354161706543 0 0 0 0 0 0 0.899649864804614 0 MVWETVD 4.389 - 352 + NaN NaN 268580.7 NaN 14936 3618 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18557 77.032 NaN 1439700 35 0 216830 0.261 + 28512 TPQFPDMIL 9 76 539.2679517160655 1076.5213504989308 2 539.26806640625 MULTI HCD FTMS 0 0 0 18555 660680.6875 0.03534366513554454 42 -1.0040969848632812 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 47.594388314883695 0.03493607795751234 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 58.4 0 0 5.4249 5.4249 92.052 0 0 0 4.762036441594191 35.527194418743804 4.762036441594191 58.40034178375397 0 1.6747425010840047 0 0.9291746928241126 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 5.4249 - 642 NaN NaN 321834.4 NaN 14937 3618 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18558 77.035 NaN 722670 35 0 257650 0.261 + 35507 YYFSKLIEF 9 71 605.3131340877388 1208.6117152422776 2 606.2998046875 MULTI HCD FTMS 0 0 0 18555 43552.98046875 0.027893381543258242 23 -0.4585723876953125 3 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 24.020572477871973 0.15282392193088168 1 YY{M(Oxidation (M))|F}{I|L}{I|L} 5 4 33.517 0 0 2.7732 0 0 0 506.2248629205688 506.2248629205688 24.564856298445576 0 0 0 0 0.6861818737241735 1.6989700043360187 0 0 YY{M(Oxidation (M))|F}{I|L}{I|L} 2.7732 - 103 + NaN NaN 197220.2 NaN 14938 3618 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18559 77.039 NaN 212500 35 0 19250 0.263 + 494 AMKKGVTVP 9 69 465.77745676296 NaN 0 465.7774353027344 PEAK HCD FTMS 0 0 0 18555 128377.1640625 0.3858688030613496 -16 0.46047210693359375 4 Unmodified _AMKKGVTVP_ REV__ENST00000581139.1_1_18:2946096-2946618:-|nuORF 3.944395688203298 0.27613285122220627 1 Q 1 -1 2.2185 0 0 0.23866 0 0 431.25137241088254 367.1970614068969 798.4484338177795 0 0 0 0 0 0 0 0 0 Q 0.23866 - 14 + NaN NaN 112439.2 NaN 14939 3618 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18561 77.044 NaN 4046500 35 0 676570 0.327 + 13730 KYPSPFFVF 9 98 566.297318493246 1130.580084053292 2 566.2975463867188 MULTI HCD FTMS 0 0 0 18560 2307284.5 0.02688335646547144 -7 0.18988037109375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 147.05914393524117 1.1935124485855994E-05 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 94.114 0 0 8.3244 8.3244 93.502 0 0 0 11.97621246364342 11.97621246364342 11.97621246364342 11.97621246364342 0 2.8494850021680094 0 1.055462187404089 1.2491348669726234 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.3244;7.2651;7.0603;6.5531;6.2778;6.2778;5.9258;5.8736;5.6844;5.289 +;+;-;-;-;-;-;-;-;- + 4860 NaN NaN 711304.9 NaN 14940 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18562 77.048 NaN 1531800 35 0 422090 0.261 + 7026 FPYSYEVAL 9 63 544.7687492011228 1087.5229454690455 2 544.7688598632812 MULTI HCD FTMS 0 0 0 18560 1201519.375 0.4682349687161537 -3 0.08188629150390625 2 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 67.34385681178166 0.00994769994983633 1 VEYEYA{I|L} 7 5 65.235 0 0 5.9985 0 0 202.13182265449376 0 202.13182265449376 0 54.777069965251854 0 0 0 1 0 1.1747425010840047 0 VEYEYA{I|L} 5.9985 - 105 NaN NaN 328040.2 NaN 14941 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18563 77.052 NaN 7265500 35 0 1714400 0.261 + 24626 RYLPTGSFPFL 11 109 649.3508761511922 NaN 0 649.3507080078125 PEAK HCD FTMS 0 0 0 18560 503090.4375 0.3134218642850056 -1 0.016265869140625 3 Unmodified _RYLPTGSFPFL_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 139.98215882498425 5.681292301382632E-16 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}SGTP{I|L} 8 8 99.704 0 0 7.6891 0 0 131.09395648471474 316.14161814337217 447.2355746280869 0 0 0 0 0 3.447621246364342 0 2.2856668758921828 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}SGTP{I|L} 7.6891 - 8806 + NaN NaN 1193317.5 NaN 14942 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18564 77.055 NaN 382570 35 0 17629 0.264 + 30401 VLNQGLRN 8 79 457.2642199679544 912.5138870027088 2 457.26446533203125 MULTI HCD FTMS 0 0 0 18560 347177.5625 0.48268509895849127 26 -0.5466156005859375 4 Unmodified _VLNQGLRN_ ENSG00000123104|ENST00000381340|ITPR2 4.75600775471527 0.5349361699807423 1 Q 1 7 12.474 0 0 1.367 0 0 414.246972099199 367.19736658267817 781.4443386818772 0 0 0 0 0 0.8494850021680094 0 0 0 + Q 1.367 + + 54 + NaN NaN 132195.4 NaN 14943 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18565 77.058 NaN 339140 35 0 29012 0.261 + 27141 SYMWTINNF 9 71 596.2603157106057 1190.5060784880113 2 596.2608032226562 MULTI HCD FTMS 0 0 0 18560 151120.75 0.13123658627213675 16 -0.31311798095703125 5 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 82.5293158979368 0.005033931517079822 1 GN{I|L}T[CS]NN{M(Oxidation (M))|F} 9 6 65.724 0 0 5.5206 0 0 222.0998249738297 0 222.0998249738297 0 51.1673014418414 0 0 0 0.5 0 0.4247425010840047 1.1237125054200234 GN{I|L}T[CS]NN{M(Oxidation (M))|F} 5.5206 - 603 NaN NaN 132286.2 NaN 14944 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18566 77.062 NaN 501010 35 0 65930 0.261 + 24079 RYAITVWYF 9 69 609.8187528290498 1217.6229527248995 2 609.8187866210938 MULTI HCD FTMS 0 0 0 18560 211509.015625 0.8470898952728378 -1 0.016265869140625 6 Unmodified _RYAITVWYF_ ENSG00000135766|ENST00000366641|EGLN1;ENSG00000269858|ENST00000303961|EGLN2;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;ENST00000593477.1_1_19:41313377-41313766:+|nuORF;nc|ENSG00000135766|Q9GZT9-2|EGLN1;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000269858|Q96KS0-2|EGLN2 22.736283301280096 0.1639198954644489 1 Q{[TV]|[{I|L}S]}WY{M(Oxidation (M))|F} 6 4 39.258 0 0 3.2241 0 0 375.2155934064469 0 375.2155934064469 0 32.26789385964942 0 0 0 1.3494850021680094 0 0.4247425010840047 0 Q{[TV]|[{I|L}S]}WY{M(Oxidation (M))|F} 3.2241 - 54 NaN NaN 172797 NaN 14945 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18567 77.065 NaN 337620 35 0 29594 0.261 + 29402 TYRQIKYF 8 71 559.8033959450611 NaN 0 559.8158569335938 PEAK HCD FTMS 0 0 0 18560 7481.0771484375 0.5545349451663107 3 -0.0850830078125 7 Unmodified _TYRQIKYF_ ENSG00000105143|ENST00000594383|SLC1A6;nc|ENSG00000105143|P48664-2|SLC1A6 14.581692164780916 0.38795613832665576 1 {I|L}T{M(Oxidation (M))|F}D 4 7 14.655 0 0 1.3113 0 0 476.29849003289706 162.0559481256469 638.354438158544 0 0 0 0 0 0 0 0.3252574989159953 0 {I|L}T{M(Oxidation (M))|F}D 1.3113 - 310 + NaN NaN 153448.9 NaN 14946 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18568 77.068 NaN 417790 35 0 37642 0.261 + 11353 IYNGKLFDLL 10 95 598.3396289719675 1194.664705010735 2 598.3399047851562 MULTI HCD FTMS 0 0 0 18560 102224.1171875 0.012945883925296824 36 -0.8434677124023438 8 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 71.70789743142352 0.01556163018108538 1 {I|L}YHK{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 7 5 53.342 0 0 4.465 0 0 0 241.15529810123283 241.15529810123283 12.274823528805626 0 0 0 0 1.360924374808178 1.6989700043360187 0.9634679910804405 0 {I|L}YHK{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 4.465 - 1114 + NaN NaN 164387.7 NaN 14947 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18569 77.072 NaN 263710 35 0 22303 0.261 + 29274 TYLPQSYLI 9 58 549.2976916842968 1096.5808304353934 2 549.2977905273438 MULTI HCD FTMS 0 0 0 18560 97875.046875 0.20208728579290283 10 -0.24166107177734375 9 Unmodified _TYLPQSYLI_ ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B 41.95555342248728 0.056367691549927025 1 [YT]{I|L}[QP]SY{I|L}{I|L} 9 0 + 61.85 0 0 5.6403 5.6403 90.213 0 0 0 17.86098023303616 49.402821967095605 17.86098023303616 18.750612633917 0 1.805462187404089 1.2218487496163564 0.3494850021680094 0 + + [YT]{I|L}[QP]SY{I|L}{I|L};[Y{I|L}]T[QP]SY{I|L}{I|L} 5.6403;3.9304 +;- + 154 NaN NaN 132239.8 NaN 14948 3619 18560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18571 77.076 NaN 751850 35 0 70588 0.327 + 15193 LMYVNLDNE 9 90 555.7597398419147 1109.5049267506292 2 555.7598876953125 MULTI HCD FTMS 0 0 0 18570 272651.40625 0.5623338306235881 -6 0.16705322265625 1 Unmodified _LMYVNLDNE_ ENSG00000163661|ENST00000295927|PTX3 22.736283301280096 0.1639198954644489 1 [Y{I|L}]T[HT]SYP 8 7 52.638 0 0 4.7443 0 0 0 144.04564831664098 144.04564831664098 32.900990676322905 0 0 0 0 0.6989700043360187 1.6989700043360187 0.3252574989159953 0 [Y{I|L}]T[HT]SYP 4.7443 - 586 NaN NaN 200274 NaN 14949 3620 18570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18572 77.081 NaN 222990 35 0 41341 0.261 + 3655 ELKQVQGR 8 62 479.2775206833423 956.5404884334846 2 479.27740478515625 MULTI HCD FTMS 0 0 0 18570 104652.5390625 0.43366513972016923 14 -0.27092742919921875 2 Unmodified _ELKQVQGR_ REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant;REV__ENSG00000180777|ENST00000690538|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B 4.3292370932331545 0.5355693454741696 1 K 1 -1 7.2185 0 0 0.75465 0 0 586.3211510357204 239.09247766666252 825.4136287023829 0 0 0 0 0 0.5 0 0 0 K 0.75465 + + 38 + NaN NaN 115070 NaN 14950 3620 18570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18573 77.084 NaN 191720 35 0 28579 0.261 -1 MPLSEDFVWM 10 59 643.7743047752573 NaN 0 643.7755737304688 PEAK HCD FTMS 0 0 0 18570 118709.859375 0.7662554282592324 -5 0.140899658203125 3 2 Oxidation (M) _M(Oxidation (M))PLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 20.453626601364224 0.27696038250606103 1 WV[C(Carbamidomethyl (C))D]C 5 -1 24.125 0 0 1.8766 0 0 165.04245339040204 454.2614840143188 619.3039374047208 0 0 0 0 0 0.9247425010840047 0 0.805462187404089 0 WV[C(Carbamidomethyl (C))D]C 1.8766 - 50 + NaN NaN 122673.4 NaN 14951 3620 18570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18574 77.088 NaN 426980 35 0 68857 0.264 + 31405 VYALVVVSY 9 53 506.7893350148962 1011.5641170965924 2 506.7893981933594 MULTI HCD FTMS 0 0 0 18570 139292.1875 0.499755915817978 -2 0.0491180419921875 4 Unmodified _VYALVVVSY_ ENSG00000198856|ENST00000361564|OSTC;ENST00000510556.1_1_4:109571811-109578607:+|nuORF;nc|ENSG00000198856|Q9NRP0-2|OSTC 42.09456458481378 0.05572955244001856 1 VVVSY 5 4 59.38 0 0 5.8702 0 0 446.25120313350493 0 446.25120313350493 0 23.005215510555033 0 0 0 2.3807196863200843 0 0 0 + VVVSY 5.8702 + + 155 + NaN NaN 150087.4 NaN 14952 3620 18570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18575 77.091 NaN 398940 35 0 33736 0.261 + 10224 IHLPHAPLF 9 67 522.8030192418171 1043.591485550434 2 522.8031005859375 MULTI HCD FTMS 0 0 0 18570 86875.1640625 0.4661267738353811 6 -0.169525146484375 5 Unmodified _IHLPHAPLF_ REV__ENSG00000169570|ENST00000510708|DTWD2;REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF;REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2 28.173230860318316 0.11963627304438548 1 {M(Oxidation (M))|F}D[YE]P{I|L}{M(Oxidation (M))|F} 7 -1 44.201 0 0 4.2354 0 0 114.16359006946625 0 114.16359006946625 0 37.21085733450202 0 0 0 0.9247425010840047 0 0.7742275032520141 0 {M(Oxidation (M))|F}D[YE]P{I|L}{M(Oxidation (M))|F} 4.2354 - 174 + NaN NaN 144319.6 NaN 14953 3620 18570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18576 77.094 NaN 359130 35 0 44671 0.261 -1 LYMPKLLYF 9 70 602.3276654504947 NaN 0 602.3129272460938 PEAK HCD FTMS 0 0 0 18570 46679.49609375 0.7287874415321016 -1 0.0328521728515625 6 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 23.1484247019978 0.16626532474190622 1 {M(Oxidation (M))|F} 1 -1 10.841 0 0 0.90145 0 0 276.1432936922018 776.4361612656047 1052.5794549578065 0 0 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F} 0.90145 + + 153 + NaN NaN 131327.3 NaN 14954 3620 18570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18578 77.099 NaN 4566600 35 0 503150 0.327 + 13422 KYPENFFLL 9 108 585.8132425088911 1169.6119320845821 2 585.8136596679688 MULTI HCD FTMS 0 0 0 18577 3908477 0.019714015216474628 54 -1.3647232055664062 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 93.312 0 0 7.978 7.978 90.002 0 0 0 7.870156338638594 16.478174818886373 7.870156338638594 7.870156338638594 0 2.555462187404089 0 0.25 1.9093793813122064 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.978;7.3051;7.1907;6.9059;6.5178;6.2834;6.233;6.1766;6.1501;6.1186 +;-;-;-;-;-;-;-;-;- + 7185 NaN NaN 462916.2 NaN 14955 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18579 77.104 NaN 1124800 35 0 303280 0.261 + 17251 LYPKTLFLL 9 70 554.3441534132147 1106.6737538932293 2 554.34423828125 MULTI HCD FTMS 0 0 0 18577 552238.8125 0.7812647744573942 -1 0.022796630859375 2 Unmodified _LYPKTLFLL_ ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA 38.175570920033316 0.07371992880350783 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 26.911 0 0 2.4317 0 0 715.426783761358 0 715.426783761358 0 2.3341064903992503 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4317 + + 101 NaN NaN 261928.2 NaN 14956 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18580 77.107 NaN 1006600 35 0 132510 0.261 + 2517 DSLLVVLDM 9 84 502.76984571803564 NaN 0 502.786865234375 PEAK HCD FTMS 0 0 0 18577 12987.888671875 0.5801917255702672 1 -0.0294342041015625 3 Unmodified _DSLLVVLDM_ ENSG00000175093|ENST00000310546|SPSB4 21.74664581756881 0.17567436591797916 1 {I|L}PSTP{I|L} 6 8 28.326 0 0 2.8226 0 0 131.05490001300558 261.08806840550403 392.1429684185096 0 0 0 0 0 0 0 1.0356668758921828 0 {I|L}PSTP{I|L} 2.8226 - 219 + NaN NaN 245705.8 NaN 14957 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18581 77.111 NaN 709900 35 0 58360 0.261 -1 DMSMDEDVAL 10 89 571.2235545903601 1140.43255624752 2 571.2225341796875 MULTI HCD FTMS 0 0 0 18577 138551.140625 0.6202108078285582 -2 0.0556488037109375 4 Oxidation (M) _DM(Oxidation (M))SMDEDVAL_ ENSG00000166788|ENST00000524803|SAAL1;ENST00000530736.1_1_11:18115485-18127588:-|nuORF;ENST00000533851.5_1_11:18111045-18127588:-|nuORF 10.073929032068715 0.4168838835836452 1 YED{I|L}{M(Oxidation (M))|F} 5 -1 48.271 0 0 4.2327 0 0 455.1678347200063 0 455.1678347200063 0 12.681956655528161 0 0 0 0 0 1.031234684152075 0 YED{I|L}{M(Oxidation (M))|F} 4.2327 - 175 + NaN NaN 192424.5 NaN 14958 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18582 77.114 NaN 394700 35 0 37494 0.261 + 35601 YYIFIPSKF 9 63 589.318958649788 NaN 0 589.3200073242188 PEAK HCD FTMS 0 0 0 18577 135170.53125 0.5492580688437803 -4 0.10800933837890625 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 27.628801355627647 0.1361920736132224 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 6 18.404 0 0 1.5641 0 0 326.126915455149 474.2357637153352 800.3626791704842 0 0 0 0 0 1.4247425010840047 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 1.5641 - 49 + NaN NaN 160922.1 NaN 14959 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18583 77.117 NaN 294220 35 0 101060 0.262 + 3517 EIEGVGAAII 10 54 486.2740229210098 970.5334929088197 2 486.2739562988281 MULTI HCD FTMS 0 0 0 18577 62672.15625 0.6257754193990913 1 -0.0294342041015625 6 Unmodified _EIEGVGAAII_ REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF 13.90604991867851 0.3810395177745597 1 A{I|L}{I|L} 3 -1 33.188 0 0 3.4195 0 0 655.317674705275 0 655.317674705275 0 26.197887582883936 0 0 0 1 0 0 0 A{I|L}{I|L} 3.4195 + + 77 NaN NaN 135714.9 NaN 14960 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18584 77.121 NaN 212630 35 0 51580 0.261 -1 GAGARHMQ 8 37 422.19824793462055 842.3819429360411 2 422.1988220214844 MULTI HCD FTMS 0 0 0 18577 56171.94140625 0.4221471954487537 -3 0.0719146728515625 7 Oxidation (M) _GAGARHM(Oxidation (M))Q_ ENST00000334018.10_2_22:29655210-29655279:+|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 2.0169 0 0 677.3028241389693 0 677.3028241389693 0 6.354837468149126 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.0169 + + 8 + NaN NaN 131465.2 NaN 14961 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18585 77.124 NaN 100330 35 0 7323.1 0.261 -1 0 56 490.38763427734375 NaN 0 490.38763427734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 1 N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 9.9215 0 0 1.0137 0 0 130.4237462873063 437.18284021549067 567.606586502797 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.0137 - 23 + NaN NaN 114518.4 NaN 14962 3621 18577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18587 77.129 NaN 3962300 35 0 583990 0.327 + 26656 SYADQMFLL 9 102 552.2576368980135 1102.500720862827 2 552.2579345703125 MULTI HCD FTMS 0 0 0 18586 4165610.25 1 0 0 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 183.0388951392065 8.687204194748383E-13 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 101.68 0 0 9.2226 9.2226 94.43 0 0 0 8.482328039146992 63.59724654087734 8.482328039146992 10.853232939203068 0 2.25 0 2.251883713047989 1.079689690656103 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AQD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}T]ASY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}T]AYS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}T]{[{M(Oxidation (M))|F}C]|[YS]}A{I|L} 9.2226;8.2382;8.1012;7.4081;6.2867;6.2149;4.7201;3.76;3.4191;3.0533 +;-;-;-;-;-;-;-;-;- + 3451 NaN NaN 534293.8 NaN 14963 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18588 77.133 NaN 416200 35 0 50414 0.261 + 3216 EDFLGFMNEF 10 65 624.7676520081352 1247.5207510830703 2 624.7677001953125 MULTI HCD FTMS 0 0 0 18586 385096.5625 0.9939812266927704 2 -0.0619964599609375 2 Unmodified _EDFLGFMNEF_ ENSG00000197283|ENST00000646630|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1 16.149105407346934 0.3600587335443843 1 MD[HD]{I|L}QVD 8 9 56.151 0 0 4.501 0 0 0 291.0986727350219 291.0986727350219 26.485709800639157 0 0 0 0 1.9247425010840047 0 0.805462187404089 0 MD[HD]{I|L}QVD 4.501 - 266 + NaN NaN 143792.8 NaN 14964 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18589 77.137 NaN 776720 35 0 59990 0.261 + -1 YSARCNAHF 9 88 563.2493946621686 1124.484236391137 2 563.249267578125 MULTI HCD FTMS 0 0 0 18586 500815.65625 1 0 0 3 Carbamidomethyl (C) _YSARC(Carbamidomethyl (C))NAHF_ REV__ENSG00000168546|ENST00000524240|GFRA2;REV__ENST00000306793.4_1_8:21550792-21640469:-|nuORF;REV__nc|ENSG00000168546|O00451-2|GFRA2;REV__nc|ENSG00000168546|O00451-3|GFRA2 21.74664581756881 0.17247014374749275 1 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 39.223 0 0 3.4881 0 0 250.09515578437657 0 250.09515578437657 0 21.263940211832008 0 0 0 1.9749073637206092 0 0.3054621874040891 0 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 3.4881 - 472 NaN NaN 198249.3 NaN 14965 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18590 77.14 NaN 888230 35 0 96947 0.261 + 21446 PWLFDAPKF 9 97 560.7954947370831 1119.5764365409661 2 560.795654296875 MULTI HCD FTMS 0 0 0 18586 637943.8125 0.7523552791828148 -2 0.0522308349609375 4 Unmodified _PWLFDAPKF_ ENSG00000149761|ENST00000279206|NUDT22;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;nc|ENSG00000149761|Q9BRQ3-3|NUDT22 106.94017166704063 0.003441928997083001 1 PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F} 9 0 + 113.34 0 0 10.124 10.124 96.604 0 0 0 88.81601545699377 16.478174818886373 16.478174818886373 17.384255975221677 0 3.079689690656103 1.5228787452803376 0.46985651719853755 0.3054621874040891 + + PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}D[KP]A{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}[PS]{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}[VS][PA]G{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}[VS][PG]A{M(Oxidation (M))|F};[WP]{I|L}{[DA]|[EG]}{M(Oxidation (M))|F}PK{M(Oxidation (M))|F};P{M(Oxidation (M))|F}[W{I|L}]DAPK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[W{I|L}]DAPK{M(Oxidation (M))|F};P{[DA]|[EG]}{I|L}W{M(Oxidation (M))|F}PK{M(Oxidation (M))|F} 10.124;8.5709;7.5552;6.5097;5.9465;5.5911;5.5728;5.4203;5.4049;5.1525 +;+;-;-;-;-;-;-;-;- + 2204 + NaN NaN 215379.2 NaN 14966 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18591 77.143 NaN 371310 35 0 39595 0.261 + 35890 YYSKFFDLI 9 84 598.305570010523 1194.5965870878458 2 598.3052978515625 MULTI HCD FTMS 0 0 0 18586 285391.78125 0.5598397451812291 -6 0.16696929931640625 5 Unmodified _YYSKFFDLI_ ENSG00000132300|ENST00000254630|PTCD3;ENST00000469585.5_1_2:86355098-86362111:+|nuORF;ENST00000487043.5_1_2:86355098-86363686:+|nuORF;ENST00000493430.5_1_2:86358220-86360412:+|nuORF;nc|ENSG00000132300|Q96EY7-2|PTCD3 47.594388314883695 0.03493607795751234 1 YYP[YV]{[{M(Oxidation (M))|F}C]|[YS]}K{I|L} 9 5 + 39.371 0 0 3.2957 3.2957 80.747 0 0 0 1.222412206649473 15.051499783199066 1.222412206649473 3.2513497213259583 0 0.5 2 0.4247425010840047 0 YYP[YV]{[{M(Oxidation (M))|F}C]|[YS]}K{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L};YYP[YV][KS]Y{I|L};[Y{I|L}]{M(Oxidation (M))|F}[Q{I|L}][NG]D{I|L}{I|L};YY[KS][VP]YY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}YKAYY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[PA]{[HG]|PP}YY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))G]|[NC]}TK{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[WP]Y{I|L};[Y{M(Oxidation (M))|F}]{I|L}[Q{I|L}][NG]D{I|L}{I|L} 3.2957;3.0236;2.9775;2.9573;2.9336;2.436;1.7646;1.7498;1.7218;1.3877 -;-;-;-;-;-;-;-;-;- 436 NaN NaN 136969.7 NaN 14967 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18592 77.147 NaN 471630 35 0 33975 0.261 + 19765 NYAWVYYHL 9 80 614.7929789950731 1227.571405056946 2 614.7926635742188 MULTI HCD FTMS 0 0 0 18586 266603.40625 1 0 0 6 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 69.10491478415734 0.009377850133389008 1 [YN]AWVWE{I|L} 8 3 83.977 0 0 6.8409 0 0 0 163.04626461883518 163.04626461883518 73.17532531436136 0 0 0 0 2 1.6989700043360187 0.7302046884880937 1.1549471895720984 [YN]AWVWE{I|L} 6.8409 - 492 NaN NaN 154464.3 NaN 14968 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18593 77.15 NaN 131410 35 0 11362 0.261 + -1 YLWALSCPSF 10 51 622.29443359375 NaN 0 622.29443359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YLWALSC(Carbamidomethyl (C))PSF_ REV__ENSG00000091490|ENST00000399878|SEL1L3;REV__ENST00000512286.1_1_4:25750049-25759447:-|nuORF;REV__nc|ENSG00000091490|Q68CR1-2|SEL1L3;REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 10.073929032068715 0.33156240198919784 1 Y 1 -1 11.237 0 0 0.90434 0 0 276.151413616207 800.3336886041624 1076.4851022203693 0 0 0 0 0 0.4247425010840047 0 0 0 Y 0.90434 + + 7 + NaN NaN 123622.6 NaN 14969 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18594 77.153 NaN 439180 35 0 27006 0.261 -1 FPFPMDNQF 9 84 579.7500929032907 1157.4856328733813 2 579.7513427734375 MULTI HCD FTMS 0 0 0 18586 68698.0546875 0.3315461673465737 -1 0.0294342041015625 8 Oxidation (M) _FPFPM(Oxidation (M))DNQF_ ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8;nc|ENSG00000101773|Q99708-3|RBBP8 21.74664581756881 0.17247014374749275 1 G{M(Oxidation (M))|F} 2 -1 21.454 0 0 1.8535 0 0 935.3849839249423 0 935.3849839249423 0 10.996075289514094 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 1.8535 - 176 + NaN NaN 172125.2 NaN 14970 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18595 77.157 NaN 226000 35 0 36936 0.264 -1 0 59 404.18801292452684 806.3614729158537 2 404.1883544921875 MULTI HCD FTMS 0 0 0 18586 115783.9609375 0.30465274429371225 -6 0.16696929931640625 9 NaN NaN 1 E 1 -1 2.4743 0 0 0.30684 0 0 373.2030694508131 301.1017244928344 674.3047939436475 0 0 0 0 0 0 0 0 0 E 0.30684 - 9 + NaN NaN 112508 NaN 14971 3622 18586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18597 77.161 NaN 1486900 35 0 256630 0.327 + 5976 FPDQVAIQL 9 65 515.7819977459875 1029.549442558775 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18596 982946.0625 0.2875253618670868 15 -0.2631988525390625 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 76.82478488871298 0.006879825292024087 1 QVA{I|L}Q{I|L} 6 3 65.935 0 0 6.4043 0 0 359.1488514630875 0 359.1488514630875 0 47.08342832424712 0 0 0 2.274227503252014 0 0 0.7302046884880937 + QVA{I|L}Q{I|L} 6.4043 + + 277 NaN NaN 310440.4 NaN 14972 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18598 77.166 NaN 1522700 35 0 144210 0.261 + 26795 SYIDLLQRF 9 98 577.813754900544 1153.612956867888 2 577.81396484375 MULTI HCD FTMS 0 0 0 18596 653558.8125 0.4203616247910642 1 -0.029327392578125 2 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 176.83740622441886 1.0594397382223596E-10 1 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8 2 95.858 0 0 8.3093 0 0 193.07250694444912 0 193.07250694444912 0 75.42078796995845 0 0 0 2.9604093769761874 0 0.5228787452803376 1.2544321917401078 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8.3093 - 2885 + NaN NaN 316432.1 NaN 14973 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18599 77.169 NaN 381230 35 0 89201 0.261 + 6505 FPIPLINRL 9 76 541.8398072397072 1081.6650615462142 2 541.8405151367188 MULTI HCD FTMS 0 0 0 18596 157139.703125 0.4122765670905853 3 -0.084625244140625 3 Unmodified _FPIPLINRL_ ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 21.74664581756881 0.17247014374749275 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}P 4 5 41.682 0 0 3.8535 0 0 0 624.3825777643186 624.3825777643186 24.999999999999996 0 0 0 0 1 1.6989700043360187 0 0 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}P 3.8535 + + 72 + NaN NaN 148126.3 NaN 14974 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18600 77.173 NaN 310030 35 0 18787 0.261 + 5516 FLDGNELTL 9 72 511.2637395582668 1020.5129261833337 2 511.2635803222656 MULTI HCD FTMS 0 0 0 18596 115964.46875 0.287971950760333 3 -0.084625244140625 4 Unmodified _FLDGNELTL_ ENSG00000213719|ENST00000375784|CLIC1 60.07390631473393 0.0174780869009295 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{I|L}T{I|L} 9 0 + 42.773 0 0 4.1914 4.1914 89.504 0 0 0 3.8541526910186974 32.85187660689884 3.8541526910186974 42.773401664266245 0 1.25 0 0.28872548999643577 0.805462187404089 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{I|L}T{I|L} 4.1914 + + 484 NaN NaN 126757.3 NaN 14975 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18601 77.176 NaN 620590 35 0 84256 0.261 -1 KMKFSNEVF 9 90 573.2865915677346 1144.5586302022691 2 573.28662109375 MULTI HCD FTMS 0 0 0 18596 317556.6875 0.2996047456467772 -8 0.225799560546875 5 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 25.399314129420986 0.14091189997036632 1 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 72.221 0 0 6.31 0 0 177.04254347968907 0 177.04254347968907 0 58.241830239172984 0 0 0 2.7302046884880937 0 1.0189301784845295 0.3494850021680094 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.31 - 1202 NaN NaN 184919.6 NaN 14976 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18602 77.179 NaN 187680 35 0 19647 0.261 + -1 FPMNMKRL 8 60 526.7730005087975 1051.531448084395 2 526.7732543945312 MULTI HCD FTMS 0 0 0 18596 160566.265625 0.3248324746463705 13 -0.21457672119140625 6 Oxidation (M) _FPM(Oxidation (M))NMKRL_ REV__ENSG00000164500|ENST00000297001|SPATA48 19.438996006549623 0.45076845602799126 1 {I|L}A{[QV]|[N{I|L}]|[RA]|[KV]}DPE 7 -1 49.614 0 0 4.7182 0 0 281.1350270001969 0 281.1350270001969 0 21.113875898303007 0 0 0 1.8851518780601921 0 0 0.3807196863200844 {I|L}A{[QV]|[N{I|L}]|[RA]|[KV]}DPE 4.7182 - 81 NaN NaN 119117.7 NaN 14977 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18603 77.183 NaN 144940 35 0 7516.2 0.261 + 6462 FPIKYVNDFF 10 57 645.3316650390625 NaN 0 645.3316650390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _FPIKYVNDFF_ ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET 11.517880264261096 0.3303265798609833 1 {M(Oxidation (M))|F} 1 9 8.2268 0 0 0.63841 0 0 165.07638522648068 973.4774023197965 1138.5537875462771 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 0.63841 + + 13 + NaN NaN 112606.7 NaN 14978 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18604 77.186 NaN 3373200 35 0 218190 0.264 + 7427 FVSPFLAW 8 117 483.757914545755 965.50127615831 2 484.2593688964844 MULTI HCD FTMS 0 0 0 18596 48420.6484375 0.17637592643816327 -7 0.19963836669921875 8 Unmodified _FVSPFLAW_ REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF 49.66892048692302 0.12981580074710167 1 [PS]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}PY 7 -1 65.728 0 0 6.8076 0 0 0 125.07140414185007 125.07140414185007 15.874919553330074 0 0 0 0 1.610924374808178 1.6989700043360187 1.7390690719683095 0 [PS]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}PY 6.8076 - 5896 NaN NaN 604257.1 NaN 14979 3623 18596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18606 77.191 NaN 54462000 35 0 9417200 0.327 + 13731 KYPSPFFVF 9 91 566.297318493246 1130.580084053292 2 566.2979125976562 MULTI HCD FTMS 0 0 0 18605 63062772 0.7347767383592059 -2 0.0619964599609375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 147.05914393524117 1.1935124485855994E-05 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 97.634 0 0 8.6358 8.6358 88.4 0 0 0 13.520599913279625 16.478174818886373 13.520599913279625 1.7609125905568135 0 2.8494850021680094 0 1.3441876774005248 1.0114393726401687 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]P{M(Oxidation (M))|F}SP{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.6358;8.48;7.4399;7.2841;7.1071;6.9513;6.6822;6.6145;6.5265;6.3953 +;-;-;-;-;-;-;-;-;- + 7209 NaN NaN 916611.4 NaN 14980 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18607 77.195 NaN 1671800 35 0 463040 0.261 + 7027 FPYSYEVAL 9 80 544.7687492011228 1087.5229454690455 2 544.7689208984375 MULTI HCD FTMS 0 0 0 18605 1715151.125 0.668398487837827 2 -0.0552978515625 2 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 74.42276476219924 0.007657080072768255 1 SYEVA{I|L} 6 3 64.418 0 0 5.9233 0 0 407.18428237129064 0 407.18428237129064 0 57.427834771286186 0 0 0 1.8807196863200843 0 1.1989700043360187 0 + SYEVA{I|L} 5.9233 + + 111 NaN NaN 351581 NaN 14981 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18608 77.199 NaN 944050 35 0 144520 0.261 + 28513 TPQFPDMIL 9 78 539.2679517160655 1076.5213504989308 2 539.26806640625 MULTI HCD FTMS 0 0 0 18605 617342.5 0.033025252601983926 48 -1.1847381591796875 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 53.40400417844725 0.026808823219830042 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 51.249 0 0 4.7606 4.7606 82.028 0 0 0 2.2628094135646393 15.00049639328357 2.2628094135646393 2.2628094135646393 0 1.7887254899964358 0 0.6307196863200843 0.3054621874040891 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L} 4.7606;4.5504;3.695;1.6255 -;+;-;- + 445 NaN NaN 232227.5 NaN 14982 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18609 77.202 NaN 706110 35 0 123380 0.263 -1 0 70 413.1933260235688 824.3720991139376 2 413.19354248046875 MULTI HCD FTMS 0 0 0 18605 830010.75 0.8446656461694368 -9 0.255126953125 4 NaN NaN 1 {I|L} 1 -1 4.6041 0 0 0.5585 0 0 78.04257452716122 630.2347506158811 708.2773251430424 0 0 0 0 0 0 0 0 0 {I|L} 0.5585 - 14 + NaN NaN 191150.2 NaN 14983 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18610 77.205 NaN 687750 35 0 233110 0.261 -1 LYPQFMFHL 9 72 606.2992298592186 1210.583906785237 2 606.2996826171875 MULTI HCD FTMS 0 0 0 18605 218327.59375 0.013638570935249714 100 -2.66473388671875 5 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 34.10243960390752 0.09241788333544565 1 {I|L}YPQ 4 -1 47.155 0 0 3.8952 0 0 0 706.3054851115683 706.3054851115683 26.264100213633768 0 0 0 0 0.4247425010840047 2 0 0 {I|L}YPQ 3.8952 + + 127 + NaN NaN 187787.1 NaN 14984 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18611 77.209 NaN 944980 35 0 152310 0.261 + 27837 TCYLYDYPF 9 100 592.753097456392 1183.4916419795838 2 592.7523193359375 MULTI HCD FTMS 0 0 0 18605 441550.53125 0.6078247011856215 -4 0.114227294921875 6 Unmodified _TCYLYDYPF_ ENST00000261015.4_1_2:203776439-203776619:-|nuORF 4.3292370932331545 0.3181982124262546 1 KVG{M(Oxidation (M))|F} 4 8 22.652 0 0 1.914 0 0 734.2636635534504 0 734.2636635534504 0 12.145052902195737 0 0 0 0 0 0 0 KVG{M(Oxidation (M))|F} 1.914 - 234 NaN NaN 237341.9 NaN 14985 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18612 77.212 NaN 258000 35 0 24398 0.261 + 18221 MPDPWAEFHL 10 72 629.7817878598132 1257.5490227864263 2 629.782470703125 MULTI HCD FTMS 0 0 0 18605 286591.9375 0.7094616605530556 2 -0.0552978515625 7 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 92.4914307365334 0.0008111888129278865 1 E{M(Oxidation (M))|F}H{I|L} 4 6 46.402 0 0 3.6899 0 0 713.2863636701187 0 713.2863636701187 0 13.214562785677657 0 0 0 1.3494850021680094 0 0.6989700043360187 0 + E{M(Oxidation (M))|F}H{I|L} 3.6899 + + 174 NaN NaN 120347.2 NaN 14986 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18613 77.215 NaN 285670 35 0 35735 0.261 + 14544 LFFTDSLVNF 10 62 601.8106580422318 1201.6067631512635 2 602.3130493164062 MULTI HCD FTMS 0 0 0 18605 141708.8125 0.7048162453274478 -2 0.0619964599609375 8 Unmodified _LFFTDSLVNF_ REV__ENSG00000143630|ENST00000368358|HCN3;REV__ENST00000496230.5_1_1:155247534-155253965:+|nuORF 8.745405648335112 0.42901288225909884 1 G[HA]PYP{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F} 11 -1 + 25.736 0 0 2.1418 2.1418 82.301 0 0 0 11.043582521789371 6.306975295687817 6.306975295687817 8.02378753635658 0 0.3054621874040891 0 0.3252574989159953 0 G[HA]PYP{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F};G[HA]PYP{I|L}{[DS]|[MA]|[CV]|TT}V{M(Oxidation (M))|F};[HQ]P[RN][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[HQ]PY{[NV]|[RG]}[{I|L}A]N{M(Oxidation (M))|F};[HQ]PY{[NV]|[RG]}[QA]V{M(Oxidation (M))|F};[HQ]P[RN][Q{I|L}]Y{M(Oxidation (M))|F} 2.1418;1.4741;0.27352;0.18751;0.11793;0.0028312 -;-;-;-;-;- 277 + NaN NaN 125298.6 NaN 14987 3624 18605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18615 77.22 NaN 4542800 35 0 1056000 0.327 + 24627 RYLPTGSFPFL 11 111 649.3508761511922 NaN 0 649.3509521484375 PEAK HCD FTMS 0 0 0 18614 442036.59375 0.27538574174413455 5 -0.07773590087890625 1 Unmodified _RYLPTGSFPFL_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 84.06023858526366 0.000870817146313227 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}SSAP{I|L} 8 7 78.155 0 0 6.0273 0 0 131.09410362613977 316.1415194147094 447.2356230408492 0 0 0 0 0 3.223197507588033 0 1.9291746928241125 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}SSAP{I|L} 6.0273 - 4038 + NaN NaN 777559.1 NaN 14988 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18616 77.224 NaN 342400 35 0 19496 0.264 + 31236 VVQVQRAN 8 68 457.2642199679544 912.5138870027088 2 457.263916015625 MULTI HCD FTMS 0 0 0 18614 291522.28125 0.4053068987537505 32 -0.7261276245117188 2 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 4.75600775471527 0.5349361699807423 1 Q 1 7 12.474 0 0 1.367 0 0 414.2470240650119 367.1972430539663 781.4442671189781 0 0 0 0 0 0.8494850021680094 0 0 0 + Q 1.367 + + 23 + NaN NaN 138039.8 NaN 14989 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18617 77.228 NaN 444560 35 0 50745 0.261 + 6931 FPVLDANDL 9 72 502.25839428181996 1002.5022356304399 2 502.25811767578125 MULTI HCD FTMS 0 0 0 18614 127443.4296875 0.314641704349777 1 -0.0260162353515625 3 Unmodified _FPVLDANDL_ ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3 110.6747026088012 0.0028322563155251486 1 NAD{I|L}PD{I|L} 7 6 70.53 0 0 7.0354 0 0 246.12172133613439 0 246.12172133613439 0 28.95319789925729 0 0 0 1.7302046884880937 0 0.6421590589602533 1.8169015600442577 NAD{I|L}PD{I|L} 7.0354 - 569 NaN NaN 167177.7 NaN 14990 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18618 77.231 NaN 569510 35 0 72860 0.261 + -1 FISSFQFVF 9 86 582.2925923936657 1162.5706318541313 2 582.2928466796875 MULTI HCD FTMS 0 0 0 18614 389825.9375 0.7378098484578745 -4 0.1207122802734375 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FISSFQFVF_ REV__ENST00000284617.6_1_1:229460388-229460436:-|nuORF 19.256988751693697 0.19398022840297344 1 T[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 44.971 0 0 3.8682 0 0 222.09971816230626 0 222.09971816230626 0 30.049406363485858 0 0 0 2.2302046884880937 0 0.805462187404089 0 T[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.8682 - 359 NaN NaN 186841.8 NaN 14991 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18619 77.234 NaN 165470 35 0 18456 0.262 + 12074 KKCLSAPAI 9 57 465.77745676296 NaN 0 465.7774353027344 PEAK HCD FTMS 0 0 0 18614 237764.109375 0.7146578830080164 -9 0.25824737548828125 5 Unmodified _KKCLSAPAI_ nc|ENSG00000099810|Q13126-2|MTAP;nc|ENSG00000099810|Q13126-5|MTAP 3.944395688203298 0.27613285122220627 1 V 1 9 1.9897 0 0 0.21405 0 0 559.319805806428 268.12384973697505 827.4436555434031 0 0 0 0 0 0 0 0 0 V 0.21405 - 3 + NaN NaN 127062.4 NaN 14992 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18620 77.238 NaN 309490 35 0 57248 0.261 + 27142 SYMWTINNF 9 72 596.2603157106057 1190.5060784880113 2 596.260986328125 MULTI HCD FTMS 0 0 0 18614 55425.09765625 0.04813237500611966 22 -0.425201416015625 6 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 51.629811660486645 0.02929079705179888 1 WT{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6 3 54.57 0 0 4.5838 0 0 397.13023727883007 0 397.13023727883007 0 42.250547101681875 0 0 0 1.805462187404089 0 0.3494850021680094 0.6989700043360187 + WT{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4.5838 + + 267 + NaN NaN 127586.4 NaN 14993 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18621 77.241 NaN 472680 35 0 81492 0.262 + 6478 FPIPGEPGF 9 53 480.74557682542917 959.4766007176584 2 481.24664306640625 MULTI HCD FTMS 0 0 0 18614 49517.73046875 0.1196925196300227 -14 0.3950042724609375 7 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 50.855029805455786 0.030374663808198754 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 46.889 0 0 4.887 4.887 90.729 0 0 0 5.686362358410122 40.602802969692746 5.686362358410122 46.88933438737884 0 1.579689690656103 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 4.887 + + 53 NaN NaN 148004 NaN 14994 3625 18614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18623 77.246 NaN 4410700 35 0 461370 0.327 + 13423 KYPENFFLL 9 117 585.8132425088911 1169.6119320845821 2 585.8134155273438 MULTI HCD FTMS 0 0 0 18622 4308378 0.0217310807893521 59 -1.499755859375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 96.93554129104106 0.004344229100022454 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 89.764 0 0 7.6747 7.6747 89.596 0 0 0 7.3598706287849325 55.912156920398445 7.3598706287849325 7.964627740862127 0 2.6307196863200843 0 0.23965182871044374 1.6445990182825423 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KYPEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};KYPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.6747;6.9937;6.8874;6.565;6.2064;6.2064;6.0996;6.0666;5.8949;5.884 +;-;-;-;-;-;-;-;+;- + 8652 NaN NaN 661492.1 NaN 14995 3626 18622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18624 77.25 NaN 1096900 35 0 117010 0.261 + 26796 SYIDLLQRF 9 99 577.813754900544 1153.612956867888 2 577.8138427734375 MULTI HCD FTMS 0 0 0 18622 356039.53125 0.22900059334155007 4 -0.05171966552734375 2 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 103.41943736471063 0.004016698775839292 1 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8 2 78.115 0 0 6.7714 0 0 193.06993771819378 0 193.06993771819378 0 60.49594422504384 0 0 0 2.7416440611282624 0 0 0.5228787452803376 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 6.7714 - 1208 + NaN NaN 249454.1 NaN 14996 3626 18622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18625 77.254 NaN 801880 35 0 191260 0.261 + 17252 LYPKTLFLL 9 80 554.3441534132147 1106.6737538932293 2 554.3441772460938 MULTI HCD FTMS 0 0 0 18622 388765.0625 0.5499947522630478 4 -0.05171966552734375 3 Unmodified _LYPKTLFLL_ ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA 29.081581746732265 0.1154664336125038 1 [Y{I|L}]{I|L}V{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}{I|L} 9 3 + 49.848 0 0 4.5043 4.5043 90.241 0 0 0 24.129712596891153 20.411159568492465 20.411159568492465 49.84813456081959 0 1.3807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L}V{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}{I|L} 4.5043 - 183 NaN NaN 204061.8 NaN 14997 3626 18622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18626 77.257 NaN 781570 35 0 57820 0.261 -1 MPYNYPVLL 9 83 563.2867640369672 1124.5589751407342 2 563.2874145507812 MULTI HCD FTMS 0 0 0 18622 288913.75 0.9925032256859393 -9 0.25473785400390625 4 Oxidation (M) _M(Oxidation (M))PYNYPVLL_ ENSG00000102786|ENST00000311234|INTS6;ENSG00000165359|ENST00000639893|INTS6L;nc|ENSG00000102786|Q9UL03-3|INTS6;nc|ENSG00000165359|Q5JSJ4|INTS6L 11.640296217721598 0.25978676193971967 1 {[{M(Oxidation (M))|F}C]|[YS]}AD[{M(Oxidation (M))|F}T][VP]{I|L}{I|L} 10 -1 + 26.36 0 0 2.3441 2.3441 86.407 0 0 0 1.14393726401687 1.6516984901486609 1.14393726401687 17.730012720637372 0 0.9247425010840047 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}AD[{M(Oxidation (M))|F}T][VP]{I|L}{I|L};[C(Carbamidomethyl (C))C][HQ]R[VP]{I|L}{I|L} 2.3441;0.76745 -;- 590 NaN NaN 201261.9 NaN 14998 3626 18622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18627 77.26 NaN 326100 35 0 42615 0.261 + -1 LYKMCRMIL 9 72 601.8106580422318 1201.6067631512635 2 602.3125 MULTI HCD FTMS 0 0 0 18622 201057.8125 1 0 0 5 2 Oxidation (M) _LYKM(Oxidation (M))CRM(Oxidation (M))IL_ REV__ENSG00000255151|ENST00000527482|GLYATL1B 12.531546534597751 0.2520865569484384 1 G[HA]PYP{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F} 11 -1 + 27.255 0 0 2.2682 2.2682 84.652 0 0 0 10.55542147514009 3.0544003065278638 3.0544003065278638 10.223703006718594 0 0.3054621874040891 0 0 0 G[HA]PYP{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F};G[HA]PYP{I|L}{[MG]|[TS]}{I|L}{M(Oxidation (M))|F};[HQ]PY{[NV]|[RG]}[QA]V{M(Oxidation (M))|F};[HQ]PY{[NV]|[RG]}[{I|L}A]N{M(Oxidation (M))|F} 2.2682;1.4174;0.58089;0.35633 -;-;-;- 257 + NaN NaN 122788.2 NaN 14999 3626 18622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18629 77.265 NaN 2746500 35 0 376110 0.327 + 26657 SYADQMFLL 9 103 552.2576368980135 1102.500720862827 2 552.2577514648438 MULTI HCD FTMS 0 0 0 18628 2050303.375 0.4921976017799553 5 -0.0470733642578125 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 118.0683919894846 0.0016252157255221692 1 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 104.43 0 0 9.4723 9.4723 91.768 0 0 0 7.245010359733541 16.478174818886373 7.245010359733541 7.245010359733541 0 1.9247425010840047 1.3979400086720375 1.656038390922711 1.024227503252014 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]G[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT][QT][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT]SAA[DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}TAA[DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}E{I|L} 9.4723;8.8151;7.7081;7.0509;5.1068;4.9898;4.4497;4.2928;3.6357;2.2067 -;+;-;-;-;-;-;-;-;- + 2631 NaN NaN 503963.8 NaN 15000 3627 18628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18630 77.27 NaN 432970 35 0 42691 0.261 + 15194 LMYVNLDNE 9 79 555.7597398419147 1109.5049267506292 2 555.7600708007812 MULTI HCD FTMS 0 0 0 18628 149508.0625 0.30835506279269675 1 -0.0126495361328125 2 Unmodified _LMYVNLDNE_ ENSG00000163661|ENST00000295927|PTX3 32.78568957990786 0.09846250359632436 1 {I|L}MYSYE 6 5 58.484 0 0 5.2712 0 0 0 320.16022669010005 320.16022669010005 24.381616030877275 0 0 0 0 1.110924374808178 1.6989700043360187 0.6307196863200843 0 {I|L}MYSYE 5.2712 - 515 + NaN NaN 143000.8 NaN 15001 3627 18628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18631 77.273 NaN 155910 35 0 7316.8 0.262 + 1852 CVKKLQGR 8 59 466.27911838406425 930.5436838349285 2 466.2790222167969 MULTI HCD FTMS 0 0 0 18628 56992.54296875 0.3152924711652895 -2 0.04528045654296875 3 Unmodified _CVKKLQGR_ tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1 2.302733041254933 0.5385759549224092 1 V 1 7 3.0989 0 0 0.33303 0 0 560.3240315905911 268.12409387760005 828.4481254681912 0 0 0 0 0 0 0 0 0 + V 0.33303 + + 11 + NaN NaN 120818.9 NaN 15002 3627 18628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18633 77.278 NaN 717730 35 0 64116 0.411 + 21447 PWLFDAPKF 9 111 560.7954947370831 1119.5764365409661 2 560.7955322265625 MULTI HCD FTMS 0 0 0 18632 454100.40625 0.5355406404560877 4 -0.034423828125 1 Unmodified _PWLFDAPKF_ ENSG00000149761|ENST00000279206|NUDT22;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;nc|ENSG00000149761|Q9BRQ3-3|NUDT22 103.35351024395868 0.004027461563756449 1 PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F} 9 0 + 98.669 0 0 8.813 8.813 94.129 0 0 0 11.576447055154517 11.576447055154517 11.576447055154517 11.576447055154517 0 2.9604093769761874 1.6989700043360187 0.25 0.2742275032520141 + + PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}D[KP]A{M(Oxidation (M))|F};P{[DA]|[EG]}{I|L}[W{M(Oxidation (M))|F}]PK{M(Oxidation (M))|F};P{M(Oxidation (M))|F}D[W{I|L}]APK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}[PA]DK{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD[W{I|L}]APK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}GPE;P[RH][HM]APK{M(Oxidation (M))|F};P[RH]A[HM]PK{M(Oxidation (M))|F} 8.813;7.779;6.5493;4.8682;4.7521;4.6756;4.6061;4.5196;3.6554;3.6554 +;+;-;-;-;-;-;-;-;- + 2252 + NaN NaN 307849.9 NaN 15003 3628 18632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18635 77.285 NaN 1108300 35 0 192770 0.327 + 5977 FPDQVAIQL 9 80 515.7819977459875 1029.549442558775 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18634 409087.09375 0.11966365109237478 21 -0.44493865966796875 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 61.60191391372663 0.015340508911304802 1 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 7 5 63.364 0 0 6.1546 0 0 242.1264363019547 0 242.1264363019547 0 49.38502291326451 0 0 0 1.9247425010840047 0 0 0.3807196863200844 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 6.1546 - 268 NaN NaN 268958.4 NaN 15004 3629 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18636 77.289 NaN 678400 35 0 74812 0.261 + 35949 YYVDFFKTL 9 97 598.305570010523 1194.5965870878458 2 598.3052368164062 MULTI HCD FTMS 0 0 0 18634 194219.6875 0.38099170159329165 1 -0.0124359130859375 2 Unmodified _YYVDFFKTL_ ENSG00000132406|ENST00000382753|TMEM128;nc|ENSG00000132406|Q5BJH2-2|TMEM128 125.0377797344192 0.0009059125702818869 1 YYVD{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L} 9 0 + 115.42 0 0 9.6615 9.6615 98.052 0 0 0 8.793709283484077 8.793709283484077 8.793709283484077 42.27674928914496 0 3.1237125054200234 2 1.7346368802282015 0 + + YYVD{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L};YYP[YT]{M(Oxidation (M))|F}KT{I|L};[Y{I|L}][DG]MT[PG]KT{I|L};YYV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ]{I|L}{I|L};YYV{[HG]|PP}[RN]{[WT]|[RM]};[Y{I|L}]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PG]KT{I|L};[Y{I|L}][MD]GT[PG]KT{I|L};[Y{I|L}]N{M(Oxidation (M))|F}VYYT{I|L};Y{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}KT{I|L};[{I|L}T][WH][C(Carbamidomethyl (C))H]KT{I|L} 9.6615;6.1225;3.4446;3.379;3.0997;3.0901;3.0452;2.8919;2.7862;1.9097 +;-;-;-;-;-;-;-;-;- + 989 + NaN NaN 189631.9 NaN 15005 3629 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18637 77.293 NaN 497310 35 0 49757 0.261 + 6258 FPFDVAVKF 9 79 535.2894681488856 1068.564383364571 2 535.2891845703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FPFDVAVKF_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 142.0795815696625 1.719916958814042E-05 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F} 9 0 + 110.69 0 0 10.358 10.358 95.275 0 0 0 100.22791930092417 16.478174818886373 16.478174818886373 10.965240951829784 0 2.9604093769761874 0 0.75 0.9247425010840047 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}S[TP]VK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVVA{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VP{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}[K{I|L}][VG]{M(Oxidation (M))|F} 10.358;9.3322;9.2367;8.136;6.8554;6.6536;5.6593;5.6024;4.931;4.4769 +;-;+;-;-;-;-;-;-;- + 615 + NaN NaN 161248 NaN 15006 3629 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18639 77.298 NaN 911780 35 0 116970 0.411 + 12426 KPPEFGPSCLA 11 109 573.2865915677346 1144.5586302022691 2 573.286865234375 MULTI HCD FTMS 0 0 0 18638 752574.375 0.7100302499601974 -1 0.0124359130859375 1 Unmodified _KPPEFGPSCLA_ ENST00000497135.5_1_9:126173862-126345492:-|nuORF 26.268140514670165 0.22820724222159966 1 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 7 80.998 0 0 7.0768 0 0 177.04234511543126 0 177.04234511543126 0 55.53075364536069 0 0 0 2.774227503252014 0 1.4634679910804405 0.3494850021680094 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.0768 - 2648 NaN NaN 363946.9 NaN 15007 3630 18638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18641 77.305 NaN 294230 35 0 45043 0.411 -1 0 90 404.18801292452684 806.3614729158537 2 404.18817138671875 MULTI HCD FTMS 0 0 0 18640 211835.671875 0.5573856538804862 1 -0.00725555419921875 1 NaN NaN 1 {[{M(Oxidation (M))|F}H]|[RQ]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V 5 -1 5.3297 0 0 0.66096 0 0 0 113.03411658232872 113.03411658232872 -0.15485646555198773 0 -0.15485646555198773 0 0 0 0 0 0.4247425010840047 {[{M(Oxidation (M))|F}H]|[RQ]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V 0.66096 - 46 NaN NaN 175065.1 NaN 15008 3631 18640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18643 77.312 NaN 70578000 35 0 12678000 0.327 + 13732 KYPSPFFVF 9 75 566.297318493246 1130.580084053292 2 566.2977905273438 MULTI HCD FTMS 0 0 0 18642 69632088 0.8113192123204036 6 -0.11223602294921875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 147.05914393524117 1.1935124485855994E-05 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 98.809 0 0 8.7397 8.7397 89.111 0 0 0 13.520599913279625 14.501962355242952 13.520599913279625 3.0102999566398125 0 2.8494850021680094 0 1.055462187404089 1.2926740567922437 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.7397;8.4734;7.5438;7.457;7.2775;7.031;6.7647;6.7456;6.7408;6.5651 +;-;-;+;-;-;-;-;-;- + 5163 NaN NaN 598808.6 NaN 15009 3632 18642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18644 77.317 NaN 1028100 35 0 305100 0.261 + 7028 FPYSYEVAL 9 61 544.7687492011228 1087.5229454690455 2 544.7691040039062 MULTI HCD FTMS 0 0 0 18642 972299.875 0.37890758237115 10 -0.212890625 2 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 60.38955033654506 0.017036522530421875 1 {M(Oxidation (M))|F}EVA{I|L} 5 4 56.938 0 0 5.2356 0 0 510.23567397285314 0 510.23567397285314 0 49.94850021680094 0 0 0 1.5 0 0.8494850021680094 0 {M(Oxidation (M))|F}EVA{I|L} 5.2356 - 119 NaN NaN 235999.2 NaN 15010 3632 18642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18645 77.32 NaN 4584600 35 0 327800 0.261 + 6811 FPSFGLWL 8 123 483.757914545755 965.50127615831 2 483.7579345703125 MULTI HCD FTMS 0 0 0 18642 291344.28125 0.7093208685425327 2 -0.035064697265625 3 Unmodified _FPSFGLWL_ REV__ENST00000282120.6_1_2:85547086-85547299:-|nuORF 52.693072896333916 0.11109454085891299 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPK 7 -1 70.627 0 0 7.3151 0 0 0 160.0396565745988 160.0396565745988 6.34012462059836 0 0 0 0 2.024227503252014 1.3979400086720375 0.9194451763165201 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPK 7.3151 - 8778 NaN NaN 784240.1 NaN 15011 3632 18642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18646 77.323 NaN 415710 35 0 35528 0.261 + 19766 NYAWVYYHL 9 69 614.7929789950731 1227.571405056946 2 614.7927856445312 MULTI HCD FTMS 0 0 0 18642 122185.046875 0.4583026473428638 8 -0.1609039306640625 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.0072241045649327805 1 [YN]AWVYYH{I|L} 9 0 + 97.15 0 0 7.914 7.914 95.024 0 0 0 18.711375162600703 14.973024840566467 14.973024840566467 27.211309630365577 0 2.7302046884880937 1.6989700043360187 0 1.079689690656103 + + [YN]AWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[HG]|PP}[TA]{NN|[MP]|[D{I|L}]|[EV]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{M(Oxidation (M))|F}YH{I|L};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VHY{M(Oxidation (M))|F}{I|L};{[HG]|PP}[PG]WV{[DS]|[MA]|[CV]|TT}N{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RCV{[DS]|[MA]|[CV]|TT}N{M(Oxidation (M))|F}{I|L};{[HG]|PP}[TA]{NN|[MP]|[D{I|L}]|[EV]}VCYH{I|L};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VWN{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RCV{[DS]|[MA]|[CV]|TT}GG{M(Oxidation (M))|F}{I|L} 7.914;5.6973;3.4015;2.4339;2.1051;2.0606;1.8663;1.7332;1.4712;1.1197 +;-;-;-;-;-;-;-;-;- + 792 NaN NaN 167047.5 NaN 15012 3632 18642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18647 77.327 NaN 609360 35 0 120360 0.261 + 13388 KYPCGTISRE 10 86 577.2880543222301 1152.56155571126 2 577.286376953125 MULTI HCD FTMS 0 0 0 18642 211500.640625 0.4101375229126075 6 -0.11223602294921875 5 Unmodified _KYPCGTISRE_ ENST00000527629.5_1_11:58912335-58916208:+|nuORF;ENST00000529358.1_1_11:58912354-58916208:+|nuORF 14.405379775768559 0.37636895476610294 1 KYP[WE]{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F} 9 6 + 36.335 0 0 3.1525 3.1525 81.876 0 0 0 8.15475504875537 7.178024757013269 7.178024757013269 6.020599913279629 0 0.5 0 0 0.3252574989159953 KYP[WE]{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F};KYPS[WQ][TP]{M(Oxidation (M))|F};KYPS[WQ]{I|L}[MT];KYP[WE][KA][MT];[C(Carbamidomethyl (C))R]HH{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F};[C(Carbamidomethyl (C))R]{I|L}HH{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[KG]R[WM]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[WM]{I|L};[C(Carbamidomethyl (C))R]HHKA[TP]{M(Oxidation (M))|F} 3.1525;2.6302;2.2849;1.7028;0.61715;0.20318;0.079843;0.011142;0.010701 -;-;-;-;-;-;-;-;- 968 + NaN NaN 178104.3 NaN 15013 3632 18642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18649 77.331 NaN 886070 35 0 138050 0.327 + 28514 TPQFPDMIL 9 79 539.2679517160655 1076.5213504989308 2 539.2676391601562 MULTI HCD FTMS 0 0 0 18648 781752.0625 0.041820479452142734 57 -1.558441162109375 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 47.594388314883695 0.03493607795751234 1 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 53.461 0 0 4.9661 4.9661 84.901 0 0 0 6.0822685886482475 29.20339538750077 6.0822685886482475 8.010299956639813 0 1.7887254899964358 0 0.6549471895720985 0.3494850021680094 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L};[QP][Y{I|L}][EP]V[MT] 4.9661;4.222;3.7616;1.0735;0.03271 -;-;-;-;- 616 NaN NaN 223862.7 NaN 15014 3633 18648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18650 77.336 NaN 803130 35 0 46676 0.261 + 35000 YSVTSMCLFA 10 103 561.2543474320179 1120.4941419308357 2 561.2545776367188 MULTI HCD FTMS 0 0 0 18648 206792.359375 0.7141165718375411 -1 0.01910400390625 2 Unmodified _YSVTSMCLFA_ REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF 24.020572477871973 0.2864316864133941 1 [WP]{I|L}{M(Oxidation (M))|F}DAME{I|L} 9 -1 + 49.356 0 0 4.4048 4.4048 88.089 0 0 0 3.969319389390833 7.694634427571856 3.969319389390833 17.92419485234568 0 0 1.3979400086720375 1.079689690656103 0 [WP]{I|L}{M(Oxidation (M))|F}DAME{I|L};[WP][RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[MT];[YT]V{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[MT];{[TV]|[{I|L}S]}Y{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[MT];[YT]VM[KT][EC]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}M[KT][EC]{M(Oxidation (M))|F};[YT]VSS[WH]QN;[WP]{I|L}{[ES]|[DT]|[{I|L}C]}EE[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}C[SG]{I|L}{I|L}[MT] 4.4048;2.8052;2.7202;1.8277;1.8164;1.7064;1.5214;1.4479;1.4412;1.3929 -;-;-;-;-;-;-;-;-;- 2387 NaN NaN 211696.3 NaN 15015 3633 18648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18651 77.339 NaN 314320 35 0 21195 0.261 + 29166 TYIQDAFQL 9 68 549.7772619380538 1097.5399709429075 2 549.7769165039062 MULTI HCD FTMS 0 0 0 18648 208948.65625 0.9639328725655363 3 -0.0445098876953125 3 Unmodified _TYIQDAFQL_ ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1 46.0223103267499 0.037698999139422325 1 [YT]{I|L}QDA{M(Oxidation (M))|F}Q{I|L} 9 0 + 80.829 0 0 7.3646 7.3646 90.446 0 0 0 15.642492736872597 59.860148676060575 15.642492736872597 9.208187539523749 0 2.110924374808178 1 0.28872548999643577 0 + + [YT]{I|L}QDA{M(Oxidation (M))|F}Q{I|L};[YT]{I|L}[AG]DA{M(Oxidation (M))|F}Q{I|L};[YT]{I|L}QDA{M(Oxidation (M))|F}[AG]{I|L};[YT]VAADA{M(Oxidation (M))|F}Q{I|L};[YT]{I|L}[AG]DA{M(Oxidation (M))|F}[AG]{I|L};[YT]{I|L}QS[{M(Oxidation (M))|F}V]Q{I|L};[YT]VAADA{M(Oxidation (M))|F}[AG]{I|L};[Q{I|L}][YT]DA{M(Oxidation (M))|F}Q{I|L};[YQ][{I|L}T]DA{M(Oxidation (M))|F}Q{I|L};[YT]{I|L}[AG]S[{M(Oxidation (M))|F}V]Q{I|L} 7.3646;6.5256;6.5256;5.744;5.6906;5.2443;4.909;4.6724;4.451;4.4053 +;-;-;-;-;-;-;-;-;- + 1649 NaN NaN 136199.2 NaN 15016 3633 18648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18652 77.343 NaN 135810 35 0 11669 0.261 + -1 SHSDMPFRLM 10 53 626.7745361328125 NaN 0 626.7745361328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _SHSDM(Oxidation (M))PFRLM(Oxidation (M))_ REV__ENSG00000102287|ENST00000370328|GABRE;REV__nc|ENSG00000102287|P78334-2|GABRE 2.9952420565917617 0.3376207769591857 1 YVW 3 -1 23.812 0 0 1.9042 0 0 165.05605478339982 634.2511690729124 799.3072238563122 0 0 0 0 0 1 0 0 0 YVW 1.9042 - 14 + NaN NaN 107645 NaN 15017 3633 18648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18654 77.347 NaN 843710 35 0 142240 0.327 + -1 MENMSLLMPS 10 99 592.753097456392 1183.4916419795838 2 592.7529296875 MULTI HCD FTMS 0 0 0 18653 377568.90625 0.5197495900836111 6 -0.1258392333984375 1 2 Oxidation (M) _M(Oxidation (M))ENMSLLM(Oxidation (M))PS_ REV__ENSG00000137251|ENST00000259782|TINAG;REV__nc|ENSG00000137251|Q9UJW2-2|TINAG 5.731851221503515 0.44496410492002586 1 KCR 3 -1 13.984 0 0 1.1816 0 0 778.259080955275 0 778.259080955275 0 0.005084446084781646 0 0 0 0.3807196863200844 0 0 0 KCR 1.1816 - 256 NaN NaN 211648.2 NaN 15018 3634 18653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18655 77.352 NaN 574460 35 0 66062 0.261 -1 SYAASGMCLLF 11 88 589.7644060453596 1177.514259157519 2 590.2655639648438 MULTI HCD FTMS 0 0 0 18653 147674.03125 0.1180956713164185 -7 0.0821380615234375 2 Oxidation (M) _SYAASGM(Oxidation (M))CLLF_ ENSG00000132164|ENST00000254488|SLC6A11 22.736283301280096 0.2589804299186601 1 VT{I|L}{M(Oxidation (M))|F} 4 -1 45.165 0 0 3.8356 0 0 699.236131736525 0 699.236131736525 0 19.222900387074517 0 0 0 1.3494850021680094 0 0.4247425010840047 0 VT{I|L}{M(Oxidation (M))|F} 3.8356 - 269 NaN NaN 178689.7 NaN 15019 3634 18653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18657 77.356 NaN 855010 35 0 69629 0.327 + 957 AYELTQYYF 9 89 599.2769943160254 1196.5394356988506 2 599.27734375 MULTI HCD FTMS 0 0 0 18656 544304.8125 0.7248471007953705 -5 0.05902099609375 1 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 96.36657018975838 0.004359138328518304 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F} 9 0 + 97.397 0 0 8.1399 8.1399 93.199 0 0 0 19.621892823592972 69.20970510141954 19.621892823592972 12.09544243948811 0 2.5114393726401687 1.3979400086720375 1.4604093769761874 0.28872548999643577 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQY[VP]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]EQYY{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F};[YE]A{I|L}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}G[TA]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQ[{I|L}T]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]Y[VP]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[WR]YY{M(Oxidation (M))|F} 8.1399;7.129;6.7638;6.2638;6.1785;6.0693;6.0236;5.7819;5.7566;5.6584 +;-;-;-;-;-;-;-;-;- + 2357 NaN NaN 214096.2 NaN 15020 3635 18656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18658 77.361 NaN 284970 35 0 14142 0.263 + 22992 RADRVPIS 8 71 457.2642199679544 912.5138870027088 2 457.2642822265625 MULTI HCD FTMS 0 0 0 18656 350971.53125 0.4879598988860908 42 -1.173004150390625 2 Unmodified _RADRVPIS_ ENSG00000168538|ENST00000334690|TRAPPC11;ENST00000504526.1_1_4:184580477-184587420:+|nuORF;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 4.3292370932331545 0.5355693454741696 1 Q 1 8 13.099 0 0 1.4355 0 0 370.2194413197098 411.2234285943969 781.4428699141067 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.4355 - 42 + NaN NaN 122818.2 NaN 15021 3635 18656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18659 77.364 NaN 540070 35 0 76327 0.261 + 7477 FVVYDGAVFF 10 77 582.2925923936657 1162.5706318541313 2 582.2929077148438 MULTI HCD FTMS 0 0 0 18656 343231.21875 0.6496216622116097 6 -0.12918853759765625 3 Unmodified _FVVYDGAVFF_ ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2 21.74664581756881 0.3077012291670537 1 T[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 7 46.688 0 0 4.0159 0 0 222.09901625800939 0 222.09901625800939 0 30.65675328855981 0 0 0 2.4247425010840047 0 0.3054621874040891 0 T[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.0159 - 150 NaN NaN 166476.5 NaN 15022 3635 18656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18660 77.368 NaN 1383800 35 0 230370 0.261 + 17001 LYIQTDHLFF 10 95 648.8349762193135 1295.6553995054269 2 648.8352661132812 MULTI HCD FTMS 0 0 0 18656 211667.59375 0.5489188264447834 -1 0.00933837890625 4 Unmodified _LYIQTDHLFF_ ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF 117.76058876431921 4.161225987453182E-05 1 {I|L}Y{I|L}QTDH{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 71.931 0 0 5.5517 5.5517 84.332 0 0 0 4.312646323611531 4.312646323611531 4.312646323611531 4.312646323611531 0 2.4960762528683706 1.3979400086720375 0.9124379954164592 0.3054621874040891 + + {I|L}Y{I|L}QTDH{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}QTDH{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y{I|L}QTDH{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}QTD{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}QTDH{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}TDH{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y{I|L}[AG]TDH{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}SGTPHY{I|L};[Y{I|L}]V{M(Oxidation (M))|F}SGTPG{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[Y{I|L}]Q{I|L}TD{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5517;5.2189;5.1766;5.0477;4.9795;4.641;4.6086;4.5653;4.4809;4.4698 +;+;-;-;-;-;-;-;-;- + 5064 + NaN NaN 298277.8 NaN 15023 3635 18656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18661 77.371 NaN 158300 35 0 15068 0.264 -1 0 61 465.77750548458 929.54045803596 2 465.77783203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 V 1 -1 0.48455 0 0 0.052128 0 0 559.3203785455288 268.12409387760005 827.4444724231289 0 0 0 0 0 0 0 0 0 V 0.052128 - 7 + NaN NaN 106945.3 NaN 15024 3635 18656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18663 77.376 NaN 4591100 35 0 480840 0.327 + 13424 KYPENFFLL 9 120 585.8132425088911 1169.6119320845821 2 585.8135986328125 MULTI HCD FTMS 0 0 0 18662 5598653 0.028239114732864317 69 -1.9548110961914062 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 88.527 0 0 7.569 7.569 89.384 0 0 0 7.265399226561399 51.12273132779854 7.265399226561399 7.870156338638594 0 2.6307196863200843 0 0.2742275032520141 1.7416440611282626 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.569;6.8961;6.7817;6.2961;6.1088;6.1088;5.9191;5.6233;5.5491;5.5089 +;-;-;-;-;-;-;-;-;- + 6527 NaN NaN 749680.4 NaN 15025 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18664 77.38 NaN 706900 35 0 169240 0.262 + 6479 FPIPGEPGF 9 42 480.74557682542917 959.4766007176584 2 480.74493408203125 MULTI HCD FTMS 0 0 0 18662 337086.25 0.4583957601762128 -4 0.0636138916015625 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 77.98433622928108 0.006504613272346738 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 72.372 0 0 7.5429 7.5429 96.097 0 0 0 7.147642715192518 63.419861030113864 7.147642715192518 72.3722859574007 0 2.377862320874889 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 7.5429 + + 134 NaN NaN 184380.9 NaN 15026 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18665 77.384 NaN 971960 35 0 130190 0.261 + -1 QMCSITYLF 9 90 589.7644060453596 1177.514259157519 2 589.7646484375 MULTI HCD FTMS 0 0 0 18662 431000.375 0.2440936882864015 -5 0.07086944580078125 3 Carbamidomethyl (C),Oxidation (M) _QM(Oxidation (M))C(Carbamidomethyl (C))SITYLF_ REV__ENSG00000133065|ENST00000367137|SLC41A1;REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF;REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF 34.10243960390752 0.09241788333544565 1 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F} 9 -1 + 54.661 0 0 4.6421 4.6421 86.465 0 0 0 9.466584062177432 16.478174818886373 9.466584062177432 9.466584062177432 0 1.2059771852360797 1.5228787452803376 0.75 0.9291746928241125 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}CSVT{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}CSVT{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}CSVT{I|L}{M(Oxidation (M))|F};[{I|L}T][C(Carbamidomethyl (C))N]YY{I|L}[MT] 4.6421;3.8381;3.3951;2.5709;1.0701 -;-;-;-;- 315 NaN NaN 234748.1 NaN 15027 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18666 77.387 NaN 401750 35 0 83757 0.264 + -1 LMVQTFFELF 10 53 430.88815530335563 NaN 0 430.888427734375 PEAK HCD FTMS 0 0 0 18662 188854.265625 0.6534142045614271 7 -0.16542816162109375 4 Oxidation (M) _LM(Oxidation (M))VQTFFELF_ REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant;REV__ENSG00000188596|ENST00000524981|CFAP54;REV__nc|ENSG00000188596|Q96N23-2|CFAP54 3.876331618118854 0.3368666864104206 1 S 1 -1 3.0989 0 0 0.36044 0 0 512.6137301850332 257.09348474674067 769.7072149317739 0 0 0 0 0 0 0 0 0 S 0.36044 - 2 + NaN NaN 138801.8 NaN 15028 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18667 77.39 NaN 221040 35 0 18643 0.261 + 6932 FPVLDANDL 9 62 502.25839428181996 1002.5022356304399 2 502.25885009765625 MULTI HCD FTMS 0 0 0 18662 38253.578125 0.0944432447262355 12 -0.29203033447265625 5 Unmodified _FPVLDANDL_ ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3 45.69961567697781 0.039180348357221985 1 [YT]{I|L}{[HG]|PP}AND{I|L} 9 5 + 61.999 0 0 6.1844 6.1844 88.239 0 0 0 13.608018480247779 34.55136871872881 13.608018480247779 9.208187539523749 0 0.7059771852360797 1.6989700043360187 0.3054621874040891 0 [YT]{I|L}{[HG]|PP}AND{I|L};[YT]{I|L}{[HG]|PP}AGGD{I|L};[YT]{I|L}{[HG]|PP}AEVN;[YT]{I|L}{[QG]|[NA]}{[HG]|PP}D{I|L};[YT]{I|L}{[HG]|PP}[DV][QA];[{M(Oxidation (M))|F}V]P{I|L}DAND{I|L} 6.1844;5.2659;4.7237;4.5111;2.4564;1.7113 -;-;-;-;-;- 189 NaN NaN 130409.7 NaN 15029 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18668 77.394 NaN 362140 35 0 36212 0.261 + 3287 EEFGQAFSF 9 57 531.2324875821478 1060.4504222310954 2 531.2327880859375 MULTI HCD FTMS 0 0 0 18662 142118.015625 0.08343574038805324 -8 0.0980377197265625 6 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 96.11092074494114 0.00436583732602279 1 S{M(Oxidation (M))|F}AEE[WQ] 7 8 63.16 0 0 5.956 0 0 165.08146826687567 0 165.08146826687567 0 46.17046012758685 0 0 0 2 0 1.5669015600442577 0.8494850021680094 S{M(Oxidation (M))|F}AEE[WQ] 5.956 - 191 + NaN NaN 147862 NaN 15030 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18669 77.397 NaN 529410 35 0 146130 0.261 + 23173 RFLAATFLL 9 52 526.3187500562756 1050.622947179351 2 526.318603515625 MULTI HCD FTMS 0 0 0 18662 234858.171875 0.217965593191376 -5 0.07086944580078125 7 Unmodified _RFLAATFLL_ ENSG00000119655|ENST00000555619|NPC2;nc|ENSG00000119655|P61916-2|NPC2 45.69961567697781 0.039180348357221985 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAAT{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 62.783 0 0 5.9758 5.9758 91.951 0 0 0 1.0873530347330274 55.793578219013824 1.0873530347330274 31.93311581407634 0 2.1435078169319297 0 0.8494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAAT{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[TA]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[RE]|[WV]}{I|L} 5.9758;2.9364;1.4396 -;-;- 168 NaN NaN 161185.9 NaN 15031 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18670 77.4 NaN 323040 35 0 47096 0.261 + 24240 RYFLPPYTF 9 63 602.3125650509794 NaN 0 602.2998657226562 PEAK HCD FTMS 0 0 0 18662 166599.453125 0.5632625403507111 6 -0.1492767333984375 8 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 27.628801355627647 0.1361920736132224 1 VVYP{I|L}S{I|L} 7 8 35.654 0 0 2.9647 0 0 165.06670010809336 263.10410486392817 428.17080497202153 0 0 0 0 0 1.3494850021680094 0 0 0 VVYP{I|L}S{I|L} 2.9647 - 213 + NaN NaN 128890.1 NaN 15032 3636 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18672 77.405 NaN 2521900 35 0 260270 0.327 + 26658 SYADQMFLL 9 110 552.2576368980135 1102.500720862827 2 552.2578735351562 MULTI HCD FTMS 0 0 0 18671 1312789 0.3151492629441269 15 -0.383209228515625 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 118.0683919894846 0.0016252157255221692 1 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 100.58 0 0 9.1232 9.1232 95.426 0 0 0 23.931732292388645 16.478174818886373 16.478174818886373 15.31743128760553 0 1.610924374808178 2 1.5512038525793939 0.6109243748081782 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]G[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT][QT][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]SAA[DC]{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9.1232;7.7339;6.9526;6.4367;5.7162;5.5632;5.5385;5.4783;5.3964;5.0474 -;-;+;-;-;-;-;-;-;- + 5119 NaN NaN 481504.1 NaN 15033 3637 18671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18673 77.41 NaN 783200 35 0 130650 0.263 -1 0 91 413.1933260235688 824.3720991139376 2 413.1935119628906 MULTI HCD FTMS 0 0 0 18671 561768.0625 0.5716867926215595 4 -0.08068084716796875 2 NaN NaN 1 C[KS] 3 -1 7.4473 0 0 0.90339 0 0 488.22761733222814 0 488.22761733222814 0 -0.02697515943353146 -0.02697515943353146 0 0 0 0 0 0 C[KS] 0.90339 - 22 NaN NaN 207894.2 NaN 15034 3637 18671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18674 77.413 NaN 555250 35 0 68783 0.261 + 11657 IYVNLIFLL 9 90 554.3441534132147 1106.6737538932293 2 554.3438720703125 MULTI HCD FTMS 0 0 0 18671 199971.3125 0.28290395173602834 15 -0.383209228515625 3 Unmodified _IYVNLIFLL_ REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF 28.486842064014134 0.11819662193267319 1 [Y{I|L}]WRR{I|L}S 7 -1 33.319 0 0 3.0107 0 0 0 129.121484140303 129.121484140303 14.735381958267553 0 0 0 0 0.5 2 0.25 0 [Y{I|L}]WRR{I|L}S 3.0107 - 316 NaN NaN 174752.4 NaN 15035 3637 18671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18675 77.416 NaN 281100 35 0 39357 0.261 + 24241 RYFLPPYTF 9 50 602.3125650509794 NaN 0 602.3133544921875 PEAK HCD FTMS 0 0 0 18671 114607.4765625 0.3874808541138681 7 -0.16551971435546875 4 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 39.94969957227396 0.07843668313024603 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 6 28.601 0 0 2.3782 0 0 165.07519019923035 463.20993982486567 628.285130024096 0 0 0 0 0 1.6382104921644451 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 2.3782 - 104 + NaN NaN 122903.2 NaN 15036 3637 18671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18676 77.42 NaN 508680 35 0 33139 0.261 + 24440 RYLDLFTNF 9 76 594.8060905160277 1187.5976280988552 2 595.307861328125 MULTI HCD FTMS 0 0 0 18671 128978.1328125 0.16381670351579766 -4 0.0738067626953125 5 Unmodified _RYLDLFTNF_ ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 51.487983226225225 0.029489205318603332 1 D{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 6 3 66.389 0 0 5.5902 0 0 432.2477284162125 0 432.2477284162125 0 59.821844178516486 0 0 0 2.25 0 0.4247425010840047 0 + D{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 5.5902 + + 454 NaN NaN 175510.5 NaN 15037 3637 18671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18678 77.425 NaN 355990 35 0 55023 0.327 + 5978 FPDQVAIQL 9 57 515.7819977459875 1029.549442558775 2 515.7822875976562 MULTI HCD FTMS 0 0 0 18677 174987.921875 0.05118639514309962 30 -0.8333206176757812 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 31.26834338654808 0.10542797264966089 1 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 7 5 55.31 0 0 5.3722 0 0 242.12628371406407 0 242.12628371406407 0 42.21085733450202 0 0 0 1.5 0 0 0 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 5.3722 - 243 NaN NaN 142163.9 NaN 15038 3638 18677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18679 77.429 NaN 642620 35 0 236320 0.261 -1 LYPQFMFHL 9 79 606.2992298592186 1210.583906785237 2 606.2994995117188 MULTI HCD FTMS 0 0 0 18677 192450.28125 0.012022057163064771 114 -3.2343368530273438 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 19.438996006549623 0.19240772610395238 1 [Y{I|L}][QP]{M(Oxidation (M))|F} 5 -1 25.726 0 0 2.1251 0 0 0 559.2371309869749 559.2371309869749 5.514115037470582 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}][QP]{M(Oxidation (M))|F} 2.1251 + + 309 + NaN NaN 190584.4 NaN 15039 3638 18677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18680 77.432 NaN 294040 35 0 30710 0.262 + 7365 FVELGQVAL 9 65 488.2792387422084 974.5439245512168 2 488.27911376953125 MULTI HCD FTMS 0 0 0 18677 117751.5 0.5193966969933682 -2 0.04862213134765625 3 Unmodified _FVELGQVAL_ ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN 56.17704186161178 0.022929533404884107 1 [{M(Oxidation (M))|F}V]E{[VA]|[{I|L}G]}QVA{I|L} 9 0 + 64.741 0 0 6.6432 6.6432 91.634 0 0 0 5.6424927368725974 50.76151861349551 5.6424927368725974 16.267959391884546 0 1.8807196863200843 0 0 0.7059771852360797 + + [{M(Oxidation (M))|F}V]E{[VA]|[{I|L}G]}QVA{I|L};[{M(Oxidation (M))|F}V]E{[VA]|[{I|L}G]}[AG]VA{I|L} 6.6432;4.9739 +;- + 164 NaN NaN 128815.9 NaN 15040 3638 18677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18682 77.437 NaN 38997000 35 0 6865700 0.327 + 13733 KYPSPFFVF 9 83 566.297318493246 1130.580084053292 2 566.2979125976562 MULTI HCD FTMS 0 0 0 18681 32829758 0.3825163680461437 13 -0.35114288330078125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 174.72732175369546 1.2540765405420886E-09 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 97.665 0 0 8.6385 8.6385 94.521 0 0 0 14.03212513775344 16.478174818886373 14.03212513775344 14.03212513775344 0 2.8494850021680094 0 1.2803695511246984 1.2544321917401078 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};KYP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.6385;7.3974;7.3468;6.5292;6.5152;6.2037;6.1831;6.1056;6.1053;5.981 +;-;-;-;-;-;-;-;-;- + 3850 NaN NaN 741662.1 NaN 15041 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18683 77.442 NaN 923100 35 0 106320 0.261 + 6259 FPFDVAVKF 9 81 535.2894681488856 1068.564383364571 2 535.2896728515625 MULTI HCD FTMS 0 0 0 18681 610832.5625 0.660621186580793 -2 0.03206634521484375 2 Unmodified _FPFDVAVKF_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 142.0795815696625 1.719916958814042E-05 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F} 9 0 + 110.18 0 0 10.311 10.311 95.194 0 0 0 90.79857447025859 16.478174818886373 16.478174818886373 10.76245158726772 0 2.9604093769761874 0 1.024227503252014 0.5994850021680094 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VP{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}D[K{I|L}][VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MG]|[TS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VK{M(Oxidation (M))|F} 10.311;9.3034;9.282;8.1599;6.8052;5.938;5.6832;5.1197;4.8027;4.7892 +;+;-;-;-;-;-;-;-;- + 1358 + NaN NaN 225636.1 NaN 15042 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18684 77.445 NaN 534060 35 0 67355 0.261 -1 KMKFSNEVF 9 82 573.2865915677346 1144.5586302022691 2 573.2863159179688 MULTI HCD FTMS 0 0 0 18681 320403.21875 0.3022903583411464 8 -0.2078704833984375 3 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 25.399314129420986 0.14091189997036632 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 56.643 0 0 4.9489 0 0 305.13765151191564 0 305.13765151191564 0 42.545094889371526 0 0 0 2.6861818737241734 0 0.6549471895720985 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.9489 - 621 NaN NaN 184367.4 NaN 15043 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18685 77.448 NaN 551840 35 0 149220 0.261 + 7029 FPYSYEVAL 9 55 544.7687492011228 1087.5229454690455 2 544.7689819335938 MULTI HCD FTMS 0 0 0 18681 320859.53125 0.12503972528709617 17 -0.4759674072265625 4 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 34.10243960390752 0.09241788333544565 1 EVA{I|L} 4 5 50.745 0 0 4.6661 0 0 657.2792058088472 0 657.2792058088472 0 35.79689690656103 0 0 0 1.5 0 0.3807196863200844 0 + EVA{I|L} 4.6661 + + 80 NaN NaN 166929.6 NaN 15044 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18686 77.452 NaN 637590 35 0 68144 0.261 + 29194 TYKNFFYLI 9 93 604.8217660890509 1207.6289792449018 2 604.8211059570312 MULTI HCD FTMS 0 0 0 18681 137243.6875 0.2892682789636105 -5 0.08991241455078125 5 Unmodified _TYKNFFYLI_ ENSG00000011405|ENST00000691414|PIK3C2A 61.60191391372663 0.015340508911304802 1 [YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 87.445 0 0 7.2411 7.2411 90.246 0 0 0 20.642492736872597 64.76911912748342 20.642492736872597 9.208187539523749 0 2.2302046884880937 1.6989700043360187 0 0.6549471895720985 + + [YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Y{I|L};[YK]TN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Y{I|L};[YK]TGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KN{[WS]|[C(Carbamidomethyl (C)){I|L}]}[PS]{I|L}{I|L};[YT]KN{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{I|L};[YK]TN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Y{I|L};[YT]KGG{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{I|L} 7.2411;6.4786;5.7719;5.3135;5.0094;4.551;4.1601;4.1347;3.8443;3.3722 +;-;-;-;-;-;-;-;-;- + 2319 NaN NaN 195348.2 NaN 15045 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18687 77.455 NaN 1366800 35 0 196390 0.261 + 32258 VYTVVDEMFL 10 81 616.3001103953502 1230.5856678575003 2 616.80126953125 MULTI HCD FTMS 0 0 0 18681 313160.21875 0.12680773068641885 -9 0.13959503173828125 6 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 214.13773924641143 6.677275740084004E-25 1 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 124.29 0 0 10.1 10.1 96.164 0 0 0 19.744237387763093 94.1005558229044 19.744237387763093 15.07007180900061 0 3.1549471895720984 1.3979400086720375 2.841129063296272 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]Y{M(Oxidation (M))|F}[HS]R{M(Oxidation (M))|F}{I|L};[YV]T{[WS]|[C(Carbamidomethyl (C)){I|L}]}C(Carbamidomethyl (C))R{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KV[TA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]Y[NP]C(Carbamidomethyl (C))R{M(Oxidation (M))|F}{I|L};[YV]T{[WS]|[C(Carbamidomethyl (C)){I|L}]}[CG]R{M(Oxidation (M))|F}{I|L} 10.1;8.8758;8.2721;8.2383;7.6429;3.3879;3.061;2.6593;2.4909;2.3127 +;-;-;-;-;-;-;-;-;- + 1837 NaN NaN 293208.2 NaN 15046 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18688 77.458 NaN 391680 35 0 39961 0.262 + 1128 AYLDALQTL 9 68 504.2742102955685 1006.533867657937 2 504.2738952636719 MULTI HCD FTMS 0 0 0 18681 89092.8046875 0.6314175884996176 3 -0.08791351318359375 7 Unmodified _AYLDALQTL_ ENSG00000114982|ENST00000431828|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;ENST00000487070.5_1_2:97281260-97297069:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-6|KANSL3;nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3 90.13494162714682 0.004522430935000059 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DA{I|L}QT{I|L} 9 0 + 84.65 0 0 8.4101 8.4101 93.608 0 0 0 8.001896823007826 8.001896823007826 8.001896823007826 11.95046257204389 0 2.8494850021680094 1.6989700043360187 1.4361818737241734 0.2742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DA{I|L}QT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DA{I|L}[AG]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DA{I|L}[TA]G{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DA{I|L}[WR];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DA[WR]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG][KQ][WR] 8.4101;7.2228;6.2857;5.3285;4.5326;1.4789;1.2794 +;-;-;-;-;-;- + 266 + NaN NaN 149030.8 NaN 15047 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18689 77.462 NaN 494110 35 0 42921 0.261 + 26797 SYIDLLQRF 9 82 577.813754900544 1153.612956867888 2 578.3151245117188 MULTI HCD FTMS 0 0 0 18681 140141.90625 0.14503938780321915 17 -0.4759674072265625 8 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 51.41523569358685 0.02959097413485123 1 [Y{I|L}]SD{I|L}{I|L}QR{M(Oxidation (M))|F} 9 2 + 45.536 0 0 3.9473 3.9473 81.644 0 0 0 8.665840359708248 14.62087558366585 8.665840359708248 3.874827947252598 0 2.0189301784845295 1.6989700043360187 0 0 [Y{I|L}]SD{I|L}{I|L}QR{M(Oxidation (M))|F};[Y{I|L}]SAKAAQ[VG]{M(Oxidation (M))|F};[Y{I|L}]SA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[Y{I|L}]SD{I|L}{I|L}[AG]R{M(Oxidation (M))|F};[Y{I|L}]SA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}{[DS]|[MA]|[CV]|TT}{I|L}QR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[DS]|[MA]|[CV]|TT}{I|L}[AG]R{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}AKAAQ[VG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.9473;3.6114;3.3885;3.149;2.9749;2.8708;2.3639;2.0726;2.028;1.8051 -;-;-;-;-;-;+;-;-;- + 2290 NaN NaN 148429.9 NaN 15048 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18690 77.465 NaN 213810 35 0 12460 0.261 + 17774 MELIWNLCE 9 69 575.7680744244818 NaN 0 575.7916870117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _MELIWNLCE_ ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85 17.44264345198275 0.2045637549147401 1 E{I|L}C 3 6 16.198 0 0 1.4091 0 0 131.04179114475204 670.2903349510408 801.3321260957928 0 0 0 0 0 0 0 0 0 E{I|L}C 1.4091 - 130 + NaN NaN 114891.1 NaN 15049 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18691 77.468 NaN 206040 35 0 11572 0.261 -1 LMFCFVFF 8 79 555.7599014765825 NaN 0 555.8029174804688 PEAK HCD FTMS 0 0 0 18681 57984.81640625 0.610871110222219 -1 0.0127410888671875 10 Carbamidomethyl (C) _LMFC(Carbamidomethyl (C))FVFF_ ENST00000586529.1_1_19:10428000-10428129:-|nuORF 24.20995872069341 0.3821035703978675 1 PYS 3 -1 13.734 0 0 1.2378 0 0 147.07073993971693 612.2663668268186 759.3371067665355 0 0 0 0 0 0.3054621874040891 0 0.28872548999643577 0 PYS 1.2378 - 91 + NaN NaN 124764 NaN 15050 3639 18681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18693 77.473 NaN 461230 35 0 67918 0.327 -1 0 87 404.18801292452684 806.3614729158537 2 404.18780517578125 MULTI HCD FTMS 0 0 0 18692 302084.8125 0.7948507409178607 10 -0.25698089599609375 1 NaN NaN 1 Q 1 -1 3.0989 0 0 0.38431 0 0 172.1567132496412 503.1227824121495 675.2794956617906 0 0 0 0 0 0 0 0 0 Q 0.38431 - 13 + NaN NaN 158173.5 NaN 15051 3640 18692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18694 77.478 NaN 207730 35 0 52873 0.261 + 8725 HHGAGAFF 8 37 422.1986983726711 842.3828438121423 2 422.1991271972656 MULTI HCD FTMS 0 0 0 18692 122279.5625 0.9084499431485433 -1 0.03592681884765625 2 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3038318265939 0 677.3038318265939 0 12.720340221751378 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 6 + NaN NaN 109014.9 NaN 15052 3640 18692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18695 77.481 NaN 195420 35 0 15354 0.261 + 29278 TYLPQTYII 9 81 556.3050470163481 1110.5955410994961 2 556.305419921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TYLPQTYII_ ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C 20.41453444215458 0.18397929046831515 1 [Y{I|L}]T[QP]TY{I|L}{I|L} 9 2 + 34.108 0 0 3.0711 3.0711 84.597 0 0 0 9.208187539523752 3.52445909153041 3.52445909153041 9.208187539523752 0 1.079689690656103 1.3979400086720375 0 0 [Y{I|L}]T[QP]TY{I|L}{I|L};[YT]{I|L}[QP]TY{I|L}{I|L} 3.0711;2.242 -;+ + 277 NaN NaN 104422.1 NaN 15053 3640 18692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18697 77.486 NaN 921160 35 0 97827 0.327 + 958 AYELTQYYF 9 84 599.2769943160254 1196.5394356988506 2 599.2769775390625 MULTI HCD FTMS 0 0 0 18696 612409.6875 0.8155419101376654 1 -0.03929901123046875 1 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 96.36657018975838 0.004359138328518304 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F} 9 0 + 105.68 0 0 8.8325 8.8325 92.749 0 0 0 24.13734275855269 86.55455634180576 24.13734275855269 9.208187539523749 0 2.6747425010840047 1.6989700043360187 1.5114393726401687 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]EQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQ[{I|L}T]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[WR]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]E[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQQ[HK]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[AG][{I|L}T]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQQE{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQQT{I|L}E{[ES]|[DT]|[{I|L}C]} 8.8325;8.0629;7.0586;6.4745;6.3509;6.2891;5.8076;5.7049;5.5925;5.5557 +;-;-;-;-;-;-;-;-;- + 1450 NaN NaN 237942 NaN 15054 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18698 77.49 NaN 625450 35 0 87139 0.261 -1 TPQFPDMIL 9 79 539.2679517160655 1076.5213504989308 2 539.267822265625 MULTI HCD FTMS 0 0 0 18696 339785.4375 0.018177105745859262 65 -1.87115478515625 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 29.84058131909904 0.11198220037953927 1 PD{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 36.938 0 0 3.4313 0 0 473.22614317330965 0 473.22614317330965 0 20.037055856763068 0 0 0 1 0 0.3494850021680094 0 PD{M(Oxidation (M))|F}{I|L}{I|L} 3.4313 + + 628 NaN NaN 181426.2 NaN 15055 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18699 77.494 NaN 393020 35 0 26480 0.261 -1 SYMVGMIASF 10 76 561.2543474320179 1120.4941419308357 2 561.2542724609375 MULTI HCD FTMS 0 0 0 18696 272968.53125 0.9426429116865368 7 -0.1820526123046875 3 Oxidation (M) _SYM(Oxidation (M))VGMIASF_ ENSG00000178719|ENST00000395068|GRINA;ENST00000533377.1_1_8:145066406-145067006:+|nuORF 13.90604991867851 0.3810395177745597 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F} 9 -1 {[{M(Oxidation (M))|F}C]|[YS]} + + 41.292 2.8432 1.1368 3.6852 3.6852 59.765 0 0 0 0 10.846623946153784 0 0 0 0.805462187404089 0 0 0.3252574989159953 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F} 3.6852 - 758 + NaN NaN 153469.4 NaN 15056 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18700 77.497 NaN 379860 35 0 67639 0.261 -1 MPMNVADLI 9 53 510.2485960484421 1018.4826391636842 2 510.2487487792969 MULTI HCD FTMS 0 0 0 18696 178438.8125 0.5407262344992164 -3 0.0613555908203125 4 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 36.12702656103203 0.08312389501731911 1 {NN|[MP]|[D{I|L}]|[EV]}A[EC]KD{I|L}{I|L} 9 -1 + 57.91 0 0 5.6859 5.6859 92.508 0 0 0 10.431052042036768 42.09614293199344 10.431052042036768 57.90993430065846 0 1 1.5228787452803376 0 0.3807196863200844 {NN|[MP]|[D{I|L}]|[EV]}A[EC]KD{I|L}{I|L} 5.6859 - 133 NaN NaN 149733.9 NaN 15057 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18701 77.5 NaN 437040 35 0 38785 0.261 -1 YSAIWQLCL 9 85 577.2880543222301 1152.56155571126 2 577.7910766601562 MULTI HCD FTMS 0 0 0 18696 30674.021484375 0.1276826770276434 15 -0.4273529052734375 5 Carbamidomethyl (C) _YSAIWQLC(Carbamidomethyl (C))L_ ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3 11.640296217721598 0.25978676193971967 1 KYD[PS]H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 35.588 0 0 3.0878 3.0878 82.809 0 0 0 9.732427371743889 6.429125571355318 6.429125571355318 8.416375079047505 0 0.3807196863200844 0 0 0 KYD[PS]H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};KY[C(Carbamidomethyl (C))R][HS]R{M(Oxidation (M))|F};KY{[NV]|[RG]}C[HS]R{M(Oxidation (M))|F};M{[MG]|[TS]}N[VG]{I|L}ER{M(Oxidation (M))|F};[C(Carbamidomethyl (C))N]{I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[TP]{M(Oxidation (M))|F};KY[PS][WQ]{I|L}[MT];[C(Carbamidomethyl (C))N]{I|L}A[VP][VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0878;2.3575;2.0917;1.3443;1.1395;0.68629;0.35597 -;-;-;-;-;-;- 926 + NaN NaN 158209.5 NaN 15058 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18702 77.504 NaN 956480 35 0 209040 0.261 + 20059 NYIPRFWTF 9 70 622.3163957915608 1242.6182386499215 2 622.8176879882812 MULTI HCD FTMS 0 0 0 18696 215298.046875 0.022271948322300877 -7 0.13852691650390625 6 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 106.94017166704063 0.003441928997083001 1 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 84.586 0 0 6.8071 6.8071 92.839 0 0 0 5.694089057042049 5.694089057042049 5.694089057042049 23.54634980487915 0 2.3193415193665468 1.6989700043360187 0 1.1549471895720984 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]NPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{[QV]|[N{I|L}]|[RA]|[KV]}Y[KG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};EH{[DA]|[EG]}{M(Oxidation (M))|F}RP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};EH[VS]{M(Oxidation (M))|F}RP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]GGPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};EHW[KS][KG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[YN]{I|L}[KG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[YN] 6.8071;4.9122;4.2132;3.9819;3.973;3.973;3.8648;3.8017;3.6312;3.3958 +;-;-;-;-;-;-;-;-;- + 575 NaN NaN 233616.9 NaN 15059 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18703 77.507 NaN 339510 35 0 51110 0.261 -1 CYMFCICSE 9 79 557.6880497847596 1113.3615466363192 2 557.6875 MULTI HCD FTMS 0 0 0 18696 102518.4921875 0.7935673495295484 1 -0.03929901123046875 7 Oxidation (M) _CYM(Oxidation (M))FCICSE_ ENST00000455680.5_1_1:91297146-91297428:-|nuORF 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8834 0 0 801.2479734935442 0 801.2479734935442 0 12.897131498072126 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8834 + + 123 + NaN NaN 133812.9 NaN 15060 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18704 77.51 NaN 201790 35 0 23023 0.261 + -1 PLEFMIDLM 9 51 570.7712571431115 1139.5279613530229 2 570.7672729492188 MULTI HCD FTMS 0 0 0 18696 88455.5859375 0.2536186808324805 -7 0.13852691650390625 8 2 Oxidation (M) _PLEFM(Oxidation (M))IDLM(Oxidation (M))_ REV__tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1 15.847184025352803 0.2234401846867398 1 YED{I|L}{M(Oxidation (M))|F} 5 -1 56.454 0 0 4.9541 0 0 454.25557143379064 0 454.25557143379064 0 40.96910013008056 0 0 0 1.8494850021680094 0 0 0 YED{I|L}{M(Oxidation (M))|F} 4.9541 - 61 NaN NaN 115888 NaN 15061 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18705 77.514 NaN 1539000 35 0 121630 0.262 + 7428 FVSPFLAW 8 103 483.757914545755 965.50127615831 2 483.7579650878906 MULTI HCD FTMS 0 0 0 18696 73861.5625 0.17982692997997046 11 -0.30252838134765625 9 Unmodified _FVSPFLAW_ REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF 40.44857923139169 0.22516712537107883 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPY 7 -1 56.151 0 0 5.8157 0 0 0 125.07163224904845 125.07163224904845 14.17857846967344 0 0 0 0 1.555462187404089 1.3979400086720375 0.6307196863200843 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPY 5.8157 - 3838 NaN NaN 332180.3 NaN 15062 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18706 77.517 NaN 217770 35 0 23836 0.261 -1 MPDPWAEFHL 10 66 629.781981130513 1257.549409327826 2 629.7823486328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 18.1463463914782 0.3413772152514074 1 D[EP] 3 -1 7.9884 0 0 0.63524 0 0 898.434843044867 0 898.434843044867 0 0.9987091999308735 0 0 0 0.3807196863200844 0 0 0 D[EP] 0.63524 - 30 NaN NaN 121923.1 NaN 15063 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18707 77.52 NaN 303920 35 0 65758 0.264 -1 LGKKMKMT 8 59 476.7680358886719 NaN 0 476.7680358886719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Oxidation (M) _LGKKM(Oxidation (M))KMT_ ENSG00000111490|ENST00000539867|TBC1D30;nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;nc|ENSG00000288591|Q9Y2I9|TBC1D30 9.347437153973935 0.38822285293237185 1 S 1 -1 8.5392 0 0 0.89742 0 0 573.3311777298725 288.1351285153235 861.4663062451959 0 0 0 0 0 0 0 0.3054621874040891 0 S 0.89742 - 31 + NaN NaN 135730.7 NaN 15064 3641 18696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18709 77.525 NaN 2523000 35 0 288980 0.327 + 13425 KYPENFFLL 9 106 585.8132425088911 1169.6119320845821 2 585.8135986328125 MULTI HCD FTMS 0 0 0 18708 2422258.75 0.012217660704089806 75 -2.1465377807617188 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 86.058 0 0 7.3578 7.3578 88.084 0 0 0 4.628618393527404 53.99772391588014 4.628618393527404 5.568109453757643 0 2.6307196863200843 0 0.28872548999643577 1.4802046884880937 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.3578;6.8818;6.5705;6.1036;6.0945;6.0945;5.9877;5.6276;5.3478;5.3164 +;-;-;-;-;-;-;-;-;- + 5295 NaN NaN 438802.7 NaN 15065 3642 18708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18710 77.53 NaN 320920 35 0 16272 0.263 + 21141 PPLMIPVF 8 69 457.2642199679544 912.5138870027088 2 457.26446533203125 MULTI HCD FTMS 0 0 0 18708 378214.28125 0.525835818588279 49 -1.3908004760742188 2 Unmodified _PPLMIPVF_ ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-5|SOX5 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F} 1 7 12.474 0 0 1.367 0 0 747.4358973560276 0 747.4358973560276 0 -1.7659970366415934 -1.7659970366415934 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.367 + + 35 + NaN NaN 130558.8 NaN 15066 3642 18708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18711 77.533 NaN 481840 35 0 27227 0.261 -1 EECLQGNSF 9 90 542.2234136441298 1082.4322743550595 2 542.2236328125 MULTI HCD FTMS 0 0 0 18708 178873.171875 0.7262159928504295 -2 0.0519866943359375 3 Carbamidomethyl (C) _EEC(Carbamidomethyl (C))LQGNSF_ ENST00000261813.8_1_5:139625415-139625532:-|nuORF 36.12702656103203 0.08312389501731911 1 Q{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7 -1 32.813 0 0 3.0314 0 0 130.01230472790945 0 130.01230472790945 0 16.949309783675005 0 0 0 0.9392404878284264 0 0.6421590589602533 0 Q{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3.0314 - 540 + NaN NaN 155395.6 NaN 15067 3642 18708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18712 77.537 NaN 469900 35 0 44621 0.261 + 31856 VYMSCFPFFI 10 80 627.2901621270483 1252.5657713208966 2 627.2898559570312 MULTI HCD FTMS 0 0 0 18708 254654.078125 0.5802854439114692 -6 0.1492767333984375 4 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 48.345845343767074 0.08380532769255708 1 VYTVVDE 7 -1 84.844 0 0 6.7736 0 0 0 444.1566256158813 444.1566256158813 52.1479633912994 0 0 0 0 1.9361818737241734 2 0.7302046884880937 0 VYTVVDE 6.7736 - 709 + NaN NaN 154452 NaN 15068 3642 18708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18714 77.541 NaN 2393000 35 0 261910 0.327 + 3288 EEFGQAFSF 9 79 531.2324875821478 1060.4504222310954 2 531.232666015625 MULTI HCD FTMS 0 0 0 18713 1449934 0.8512384321705279 -1 0.01615142822265625 1 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 201.56835220063672 1.5491848823648643E-17 1 EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 102.47 0 0 9.663 9.663 95.757 0 0 0 8.851518780601921 8.851518780601921 8.851518780601921 14.63849499163517 0 3.0752574989159953 0 2.6479400086720375 0.7614393726401688 + + EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}QEEA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}G[AG]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}EEQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[DP][YQ]SA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[AG]EEA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}[SG]SA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[CP]|[EA]}GEA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}EE[AG]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9.663;8.2826;8.0766;7.0252;6.7414;6.5031;6.3895;5.6673;5.4465;5.4388 +;-;-;-;-;-;-;-;-;- + 2372 NaN NaN 447224.5 NaN 15069 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18715 77.546 NaN 1568000 35 0 282700 0.261 -1 SYAASGMCLLF 11 105 589.7644060453596 1177.514259157519 2 589.7647705078125 MULTI HCD FTMS 0 0 0 18713 837867.25 0.4745195577773788 2 -0.048858642578125 2 Oxidation (M) _SYAASGM(Oxidation (M))CLLF_ ENSG00000132164|ENST00000254488|SLC6A11 36.12702656103203 0.16189322891242686 1 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F} 9 -1 + 57.83 0 0 4.9112 4.9112 88.411 0 0 0 6.41073692030254 21.367392074093686 6.41073692030254 15.241049764686132 0 1.3807196863200843 1.5228787452803376 1.0189301784845295 0.3252574989159953 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}{[QC]|[C(Carbamidomethyl (C))A]}ST{I|L}{M(Oxidation (M))|F};[{I|L}T][C(Carbamidomethyl (C))N]YY{I|L}[MT];[YV]T{I|L}[NS][MT]C{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[NS][MT]C{M(Oxidation (M))|F};[YV]T{I|L}[NS]{[{M(Oxidation (M))|F}C]|[YS]}[MT] 4.9112;3.6169;1.9519;1.2261;1.09;0.3428 -;-;-;-;-;- 1170 NaN NaN 327649.8 NaN 15070 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18716 77.549 NaN 1454400 35 0 169340 0.261 + 26659 SYADQMFLL 9 99 552.2576368980135 1102.500720862827 2 552.2579345703125 MULTI HCD FTMS 0 0 0 18713 747187.875 0.17937056761371278 21 -0.6050186157226562 3 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 86.33184430468982 0.004622086694044132 1 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 96.182 0 0 8.724 8.724 94.268 0 0 0 14.983105537896009 16.478174818886373 14.983105537896009 12.460762528683702 0 1.610924374808178 2 1.1237125054200234 0.3252574989159953 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]G[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT]GDQ{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YT][QT][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT]SAA[DC]{M(Oxidation (M))|F}{I|L}{I|L} 8.724;7.5938;7.365;6.7543;6.2348;5.624;5.4598;5.3832;5.1184;5.0554 -;-;-;+;-;-;-;-;-;- + 3311 NaN NaN 298490.2 NaN 15071 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18717 77.553 NaN 991450 35 0 239830 0.262 + 6480 FPIPGEPGF 9 42 480.74557682542917 959.4766007176584 2 480.7449645996094 MULTI HCD FTMS 0 0 0 18713 525957.375 0.7152372152035582 3 -0.08435821533203125 4 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 89.42679046578446 0.004540987215715461 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 79.223 0 0 8.2569 8.2569 97.357 0 0 0 5.6424927368725974 68.76561777552956 5.6424927368725974 79.22319268113631 0 2.7134679910804405 0 0.3494850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 8.2569 + + 94 NaN NaN 237077.5 NaN 15072 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18718 77.556 NaN 695840 35 0 211360 0.261 + 23174 RFLAATFLL 9 59 526.3187500562756 1050.622947179351 2 526.3189086914062 MULTI HCD FTMS 0 0 0 18713 508539.4375 0.4719618622207935 2 -0.048858642578125 5 Unmodified _RFLAATFLL_ ENSG00000119655|ENST00000555619|NPC2;nc|ENSG00000119655|P61916-2|NPC2 39.94969957227396 0.06557568441294001 1 AT{M(Oxidation (M))|F}{I|L}{I|L} 5 4 61.88 0 0 5.8899 0 0 487.2918396715355 0 487.2918396715355 0 56.395840698003 0 0 0 1.8252574989159953 0 0.805462187404089 0 + AT{M(Oxidation (M))|F}{I|L}{I|L} 5.8899 + + 126 NaN NaN 185367.5 NaN 15073 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18719 77.559 NaN 1471100 35 0 322180 0.261 + 9153 HPIETLVDIF 10 86 592.3214097750489 1182.6282666168977 2 592.3215942382812 MULTI HCD FTMS 0 0 0 18713 314235.65625 0.31564298997618256 -4 0.10406494140625 6 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 56.17704186161178 0.05532499666593632 1 VD{I|L}{M(Oxidation (M))|F} 4 6 47.682 0 0 4.0319 0 0 690.3714446859642 0 690.3714446859642 0 21.46241230915113 0 0 0 1.2614393726401687 0 0.6139829889124311 0 + VD{I|L}{M(Oxidation (M))|F} 4.0319 + + 470 NaN NaN 320700.9 NaN 15074 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18720 77.563 NaN 912870 35 0 68639 0.261 + 15630 LPEEISGLTSL 11 104 579.8163695223361 1157.6181861114721 2 579.8164672851562 MULTI HCD FTMS 0 0 0 18713 245156.03125 0.4562134701784997 -1 0.01615142822265625 7 Unmodified _LPEEISGLTSL_ ENSG00000137269|ENST00000370888|LRRC1;ENST00000487251.5_1_6:53762124-53769284:+|nuORF 76.82478488871298 0.008712912646854446 1 [EP]E{I|L}{I|L}SG{I|L}TS{I|L} 11 2 + 58.101 0 0 5.019 5.019 82.798 0 0 0 4.357285695614372 26.722226523697934 4.357285695614372 3.0102999566398125 0 1.916386562212267 0 1.1549471895720984 0 [EP]E{I|L}{I|L}SG{I|L}TS{I|L};[EP]{I|L}E{I|L}SG{I|L}TS{I|L};[EP]E{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS{I|L};[EP]{I|L}E{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS{I|L};[EP]{I|L}[{I|L}T]DG{I|L}TS{I|L} 5.019;4.759;4.2483;3.9883;3.7426 -;-;-;-;- 1782 NaN NaN 217723.9 NaN 15075 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18721 77.566 NaN 368290 35 0 50617 0.261 + -1 ASSCNYYCFL 10 56 642.7551473035007 1283.4957416738014 2 643.2577514648438 MULTI HCD FTMS 0 0 0 18713 59521.296875 0.3579407541879494 -1 0.01615142822265625 8 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 4.897010918128616 0.4493830473644964 1 V[PS]{M(Oxidation (M))|F}{I|L} 5 -1 23.188 0 0 1.8066 0 0 722.1789961231376 0 722.1789961231376 0 15.115618994235687 0 0 0 1 0 0 0 V[PS]{M(Oxidation (M))|F}{I|L} 1.8066 - 30 NaN NaN 129039 NaN 15076 3643 18713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18723 77.571 NaN 1300000 35 0 113870 0.327 + 24441 RYLDLFTNF 9 93 594.8060905160277 1187.5976280988552 2 594.80615234375 MULTI HCD FTMS 0 0 0 18722 989875.0625 0.9241839516908223 3 -0.0744171142578125 1 Unmodified _RYLDLFTNF_ ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 97.74103586103693 0.004323122048066454 1 C[PG]{I|L}D{I|L}{M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 10 3 80.225 0 0 6.7553 0 0 62.038960158910704 0 62.038960158910704 0 60.179381089317516 0 0 0 2.4247425010840047 0 2.0994850021680094 1.372363747448347 C[PG]{I|L}D{I|L}{M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6.7553 - 3104 + NaN NaN 291713.2 NaN 15077 3644 18722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18724 77.575 NaN 208000 35 0 17188 0.263 + 14111 LAAARSRSV 9 61 465.77750548458 929.54045803596 2 465.7776184082031 MULTI HCD FTMS 0 0 0 18722 271422.375 0.9767650563577386 -5 0.133453369140625 2 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 6.723162845929126 0.3000504726104499 1 V 1 -1 5.2423 0 0 0.56396 0 0 603.3470814263882 224.09751306705314 827.4445944934413 0 0 0 0 0 0.3252574989159953 0 0 0 V 0.56396 + + 20 + NaN NaN 117157.5 NaN 15078 3644 18722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18725 77.579 NaN 514870 35 0 85826 0.261 + -1 SHYHSKLLMSG 11 86 638.3114108957272 1274.6082688582544 2 638.3112182617188 MULTI HCD FTMS 0 0 0 18722 305222.75 0.31923559650875166 -4 0.09752655029296875 3 Oxidation (M) _SHYHSKLLM(Oxidation (M))SG_ REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense 23.789781309258295 0.24980126723476595 1 [YN]{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 -1 + 52.461 0 0 4.1158 4.1158 80.334 0 0 0 0.7203112844198643 0.7203112844198643 0.7203112844198643 0.7203112844198643 0 2.028659694992122 1.6989700043360187 0.6549471895720985 0.3494850021680094 [YN]{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}{[RE]|[WV]}WT{M(Oxidation (M))|F};[YN]{I|L}W{[HG]|PP}[HT]T{M(Oxidation (M))|F};[YN]{I|L}E[HA]G{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]};[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}GQ{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}G[HA]P{I|L}{M(Oxidation (M))|F}[SG];[{M(Oxidation (M))|F}T]{[CA]|SS}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}N{[HG]|PP}W[QP]{M(Oxidation (M))|F};[YN]{I|L}[VP]T[RH]E{M(Oxidation (M))|F};[YN]{I|L}E[HQ]{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]} 4.1158;4.0593;2.8161;2.4273;2.3266;2.2695;2.216;1.9936;1.9145;1.9114 -;-;-;-;-;-;-;-;-;- 1070 + NaN NaN 162992 NaN 15079 3644 18722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18726 77.582 NaN 824750 35 0 164080 0.261 + 1725 CITSPFRWTF 10 102 629.3066532826065 1256.5987536320129 2 629.306396484375 MULTI HCD FTMS 0 0 0 18722 277617.09375 0.23597677884117332 -4 0.09752655029296875 4 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 49.55428908609986 0.07941048486997417 1 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 10 -1 + 59.306 0 0 4.7195 4.7195 88.805 0 0 0 2.498774732165998 27.12627677717242 2.498774732165998 19.987737688117235 0 1.5994850021680094 0 1.1549471895720984 0.28872548999643577 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VG][RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[EC]{I|L}RR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[EC]{I|L}RR{M(Oxidation (M))|F}[VS]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PRR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PRR{M(Oxidation (M))|F}[VS]T{M(Oxidation (M))|F};{[YC]|[HE]}W{NN|[MP]|[D{I|L}]|[EV]}W{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV][HS][HV]Q{I|L}Q{M(Oxidation (M))|F} 4.7195;3.1289;2.7868;2.7868;1.9139;1.9139;1.1138;0.15329 -;-;-;-;-;-;-;- 787 NaN NaN 217203.9 NaN 15080 3644 18722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18727 77.585 NaN 481340 35 0 83158 0.261 + 17002 LYIQTDHLFF 10 82 648.8349762193135 1295.6553995054269 2 648.8358154296875 MULTI HCD FTMS 0 0 0 18722 93122.015625 0.24149387550283796 8 -0.21768951416015625 5 Unmodified _LYIQTDHLFF_ ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF 41.95555342248728 0.12843670176738353 1 [Y{I|L}]R[YT]{[CA]|SS}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 6 + 46.316 0 0 3.5747 3.5747 80.802 0 0 0 5.0565842292838425 7.3239375982296835 5.0565842292838425 3.0102999566398125 0 0.7614393726401688 1.3010299956639813 0.3807196863200844 0 [Y{I|L}]R[YT]{[CA]|SS}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]R[YT]{[CA]|SS}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HK][HS]{I|L}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HK][HS]H{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HK][HA]WN{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HK][HS]H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]RP{[MG]|[TS]}[VS]N{I|L}{M(Oxidation (M))|F};[Y{I|L}]V[PG]{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}{[CA]|SS}[PA]{I|L}{[WN]|[YH]};[Y{I|L}]{I|L}Q{[ES]|[DT]|[{I|L}C]}H{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.5747;3.3424;3.1845;3.0485;2.9874;2.8162;2.7452;2.7452;2.6075;1.4393 -;-;-;-;-;-;-;-;-;- 654 NaN NaN 168022.4 NaN 15081 3644 18722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18729 77.59 NaN 12542000 35 0 2150200 0.327 + 13734 KYPSPFFVF 9 87 566.297318493246 1130.580084053292 2 566.2979125976562 MULTI HCD FTMS 0 0 0 18728 10762841 0.12540338704836404 19 -0.5561599731445312 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 134.295615338601 0.00034446139420701925 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 94.58 0 0 8.3656 8.3656 88.957 0 0 0 3.732492903979008 10.272861173562674 3.732492903979008 3.732492903979008 0 2.8494850021680094 0 1.055462187404089 0.9947026752325154 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS][YK]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]KY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.3656;8.0355;7.457;6.1399;5.7081;5.5118;5.4021;5.3826;5.1595;4.7979 +;-;+;-;-;-;-;-;-;- + 3865 NaN NaN 612891.2 NaN 15082 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18730 77.595 NaN 4322300 35 0 751590 0.229 + 32259 VYTVVDEMFL 10 93 616.3001103953502 1230.5856678575003 2 616.2998046875 MULTI HCD FTMS 0 0 0 18728 3113274 0.8560927617100357 -3 0.06501007080078125 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 1 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 128.06 0 0 10.406 10.406 96.249 0 0 0 20.993624753846092 72.74584191670913 20.993624753846092 14.573259432077563 0 3.142159058960253 1.5228787452803376 2.9291746928241125 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]YEDVVV{M(Oxidation (M))|F}V;[YV]TV[MT]EE{M(Oxidation (M))|F}{I|L};[YV]YEDV{I|L}[MT]V;[YT]VV[MT]EE{M(Oxidation (M))|F}{I|L} 10.406;9.222;8.6518;8.536;8.0062;7.7169;7.293;6.5073;6.1802;4.637 +;-;-;-;-;-;-;-;-;- + 3021 NaN NaN 619397.6 NaN 15083 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18731 77.598 NaN 2158700 35 0 923710 0.261 + 31488 VYFKNFIPF 9 83 587.8185253931067 1173.6224978530133 2 587.8187255859375 MULTI HCD FTMS 0 0 0 18728 1599882.75 1 0 0 3 Unmodified _VYFKNFIPF_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 61.357469665136826 0.01568246967499496 1 VY{M(Oxidation (M))|F}K 4 5 55.231 0 0 4.7061 0 0 0 633.3035982721311 633.3035982721311 37.52316007860276 0 0 0 0 1.2302046884880937 1.6989700043360187 0 0.4247425010840047 + VY{M(Oxidation (M))|F}K 4.7061 + + 819 + NaN NaN 414375.8 NaN 15084 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18732 77.601 NaN 869850 35 0 89362 0.261 + 6260 FPFDVAVKF 9 83 535.2894681488856 1068.564383364571 2 535.2898559570312 MULTI HCD FTMS 0 0 0 18728 475630.3125 0.5143986760161355 4 -0.11385345458984375 4 Unmodified _FPFDVAVKF_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 118.0683919894846 0.0016252157255221692 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F} 9 0 + 104.33 0 0 9.7631 9.7631 91.951 0 0 0 89.92803887050796 16.478174818886373 16.478174818886373 7.131068929195408 0 2.9802046884880937 0 0.7302046884880937 0.28872548999643577 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}D[K{I|L}][VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}[K{I|L}][VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[VS][TP]K{M(Oxidation (M))|F} 9.7631;9.0958;9.0744;7.7613;6.6404;5.3274;5.2684;4.9375;4.916;4.2896 +;+;-;-;-;-;-;-;-;- + 824 + NaN NaN 212875.4 NaN 15085 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18733 77.604 NaN 645980 35 0 75191 0.261 + 29195 TYKNFFYLI 9 85 604.8217660890509 1207.6289792449018 2 604.8214721679688 MULTI HCD FTMS 0 0 0 18728 352387.53125 0.7427265803603755 1 -0.03549957275390625 5 Unmodified _TYKNFFYLI_ ENSG00000011405|ENST00000691414|PIK3C2A 57.72198328787511 0.020768266150574023 1 [YT]K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 57.76 0 0 4.7829 4.7829 87.566 0 0 0 36.41889185729275 1.6300417266555698 1.6300417266555698 12.465723808669345 0 2.7134679910804405 1.5228787452803376 0.3054621874040891 0 + + [YT]K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}Y{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}YKTY{I|L}{I|L};[YT]K{I|L}[C(Carbamidomethyl (C))N][PS]{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}KYTY{I|L}{I|L};{[DS]|[MA]|[CV]|TT}[RN]G[RD]Y{I|L}{I|L};[YT]K{I|L}[Y{M(Oxidation (M))|F}]N{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}YKT{I|L}Y{I|L};[Y{I|L}]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WP]{I|L}{I|L};[YT]K{I|L}[Y{M(Oxidation (M))|F}]GG{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}KYT{I|L}Y{I|L} 4.7829;3.7507;3.5293;3.5014;3.322;3.1198;2.4384;2.4206;2.3573;2.1891 +;-;-;-;-;-;-;-;-;- + 2081 + NaN NaN 180879 NaN 15086 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18734 77.608 NaN 334010 35 0 60372 0.261 + -1 ASSCNYYCFL 10 62 642.7551473035007 1283.4957416738014 2 642.75537109375 MULTI HCD FTMS 0 0 0 18728 74385.8515625 0.36221372361494386 1 -0.03549957275390625 6 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 4.897010918128616 0.4493830473644964 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 -1 27.664 0 0 2.1553 0 0 858.296678611525 0 858.296678611525 0 18.711375162600703 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 2.1553 - 21 NaN NaN 137770.8 NaN 15087 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18735 77.611 NaN 296850 35 0 18146 0.261 + 4961 FASVLWEFF 9 76 573.2865915677346 1144.5586302022691 2 573.2863159179688 MULTI HCD FTMS 0 0 0 18728 128687.9453125 0.12141302841609322 14 -0.40827178955078125 7 Unmodified _FASVLWEFF_ nc|ENSG00000151240|Q9Y2E4-2|DIP2C 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 33.812 0 0 2.9542 0 0 733.3472177040254 0 733.3472177040254 0 13.354706403678875 0 0 0 1 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.9542 - 225 + NaN NaN 142484.6 NaN 15088 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18736 77.614 NaN 273850 35 0 34129 0.261 + 15677 LPELNPPVL 9 43 496.2947762945517 990.5749996559034 2 496.2949523925781 MULTI HCD FTMS 0 0 0 18728 65915.7890625 0.6673453315247907 1 -0.03549957275390625 8 Unmodified _LPELNPPVL_ ENSG00000198746|ENST00000361720|GPATCH3 6.2057823575117 0.30397260197431997 1 N 1 8 8.4949 0 0 0.85757 0 0 452.26202465765965 421.2457342865284 873.507758944188 0 0 0 0 0 0.5 0 0 0 + N 0.85757 + + 15 + NaN NaN 121950.5 NaN 15089 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18737 77.618 NaN 200650 35 0 25803 0.261 + 5979 FPDQVAIQL 9 51 515.7819977459875 1029.549442558775 2 515.7816772460938 MULTI HCD FTMS 0 0 0 18728 89146.4140625 0.02607656303875114 37 -1.0772323608398438 9 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 24.990960013464015 0.14443998892849796 1 C(Carbamidomethyl (C))A{I|L}Q{I|L} 5 5 49.464 0 0 4.8044 0 0 426.2497730939469 0 426.2497730939469 0 33.979400086720375 0 0 0 1.5 0 0 0 C(Carbamidomethyl (C))A{I|L}Q{I|L} 4.8044 - 88 NaN NaN 111558.5 NaN 15090 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18738 77.621 NaN 816280 35 0 105400 0.261 + 33885 YLNESSGEEW 10 105 607.254372919939 1212.4941929066779 2 607.2542114257812 MULTI HCD FTMS 0 0 0 18728 102458.2265625 0.10446197037614313 -5 0.11699676513671875 10 Unmodified _YLNESSGEEW_ ENSG00000163257|ENST00000382247|DCAF16 9.38312468134398 0.42334543440173333 1 [QP]{I|L}SVDW 7 8 36.785 0 0 3.0338 0 0 0 384.06916968597767 384.06916968597767 -4.625238700523624 0 -4.625238700523624 0 0 0.9829535345634596 0 0 0 [QP]{I|L}SVDW 3.0338 - 1053 + NaN NaN 214319.2 NaN 15091 3645 18728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18740 77.626 NaN 353460 35 0 60591 0.327 + 7069 FQVAIFAGWDG 11 70 404.20131936735356 NaN 0 404.1882629394531 PEAK HCD FTMS 0 0 0 18739 11983.8671875 0.25426563596867463 -4 0.1005096435546875 1 Unmodified _FQVAIFAGWDG_ ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF 7.0370850670814 0.32215795970748445 1 V 1 10 5.4846 0 0 0.68014 0 0 116.08361743548512 588.2122618321795 704.2958792676646 0 0 0 0 0 0 0 0 0 + V 0.68014 + + 7 + NaN NaN 141728.1 NaN 15092 3646 18739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18741 77.63 NaN 472600 35 0 77116 0.261 + 9751 HYGLLFDEF 9 70 570.7712571431115 1139.5279613530229 2 570.7708129882812 MULTI HCD FTMS 0 0 0 18739 161669.140625 0.4635356121613875 -2 0.05496978759765625 2 Unmodified _HYGLLFDEF_ ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF 77.98433622928108 0.006504613272346738 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}DE{M(Oxidation (M))|F} 9 3 + 61.132 0 0 5.3646 5.3646 83.772 0 0 0 3.7371250542002343 16.478174818886373 3.7371250542002343 3.7371250542002343 0 1.9247425010840047 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};{[WN]|[YH]}{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};{[WN]|[YH]}{[VA]|[{I|L}G]}{I|L}YD{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}[WH]{M(Oxidation (M))|F};{[WN]|[YH]}{[VA]|[{I|L}G]}{I|L}YD{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[WH]{I|L};{[WN]|[YH]}{[VA]|[{I|L}G]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}{M(Oxidation (M))|F} 5.3646;5.0367;3.1774;2.4931;2.0854;2.0793;1.2577 -;+;-;-;-;-;- + 235 NaN NaN 161273.5 NaN 15093 3646 18739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18742 77.634 NaN 296640 35 0 33025 0.264 + -1 VYEFACHAIC 10 55 423.85071817015466 1268.530325110664 3 423.850830078125 MULTI HCD FTMS 0 0 0 18739 55078.19140625 0.3718234580130601 2 -0.04224395751953125 3 2 Carbamidomethyl (C) _VYEFAC(Carbamidomethyl (C))HAIC(Carbamidomethyl (C))_ REV__ENSG00000148950|ENST00000532287|IMMP1L;REV__ENST00000527184.5_1_11:31470587-31484823:-|nuORF;REV__ENST00000532624.5_1_11:31474627-31484823:-|nuORF 6.1918466704503565 0.44252927588099017 1 VY 2 -1 44.776 0 0 3.5298 0 0 0 1003.3749650293862 1003.3749650293862 29.82779677648047 0 0 0 0 0.3807196863200844 2 0 0 VY 3.5298 + + 16 + NaN NaN 124786.8 NaN 15094 3646 18739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18743 77.637 NaN 299820 35 0 31135 0.261 + 11032 IYFCIPVCFV 10 63 602.2991755560702 NaN 0 602.3136596679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _IYFCIPVCFV_ ENST00000273038.7_1_3:11598803-11598956:-|nuORF 12.531546534597751 0.32945902202414107 1 G{I|L}{I|L}A 4 9 18.805 0 0 1.5637 0 0 163.99268597366523 681.3365572565061 845.3292432301714 0 0 0 0 0 0.28872548999643577 0 0 0 G{I|L}{I|L}A 1.5637 - 267 + NaN NaN 141979.4 NaN 15095 3646 18739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18744 77.64 NaN 482410 35 0 32182 0.261 + 22475 QREGDTVPSFL 11 86 624.813076655531 1247.6116003778618 2 624.8112182617188 MULTI HCD FTMS 0 0 0 18739 54448.1484375 0.6535841300145481 2 -0.04224395751953125 5 Unmodified _QREGDTVPSFL_ ENSG00000123329|ENST00000393791|ARHGAP9;ENST00000546704.1_1_12:57868176-57868820:-|nuORF;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 9.38312468134398 0.3753269387758208 1 [YN]{I|L}[WH]AA{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 10 10 + 25.62 0 0 2.0535 2.0535 79.506 0 0 0 4.685158525391234 -0.3836439183553608 -0.3836439183553608 1.76091259055681 0 0.4247425010840047 1.6989700043360187 0 0 [YN]{I|L}[WH]AA{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YN]{I|L}[WH]KK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}[RH]DVVP[{M(Oxidation (M))|F}T];[YN]{I|L}[WH][RV]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YN]{I|L}[VS]H[RV]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[HM][R{M(Oxidation (M))|F}]DVVP[{M(Oxidation (M))|F}T];[YN]{I|L}[KG]T[RH]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}KKHNVP[{M(Oxidation (M))|F}T];[YN]{I|L}[VS]H[HK][HN];[YN]{I|L}[KG]T[R{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}C]|[YS]} 2.0535;1.9124;1.6532;1.53;1.4298;1.4119;1.2305;1.2059;1.1349;0.98924 -;-;-;-;-;-;-;-;-;- 992 NaN NaN 161965.3 NaN 15096 3646 18739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18746 77.645 NaN 15706000 35 0 4248100 0.327 + 20060 NYIPRFWTF 9 115 622.3163957915608 1242.6182386499215 2 622.3165283203125 MULTI HCD FTMS 0 0 0 18745 10442055 0.7602574144365439 -1 0.01944732666015625 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 142.0795815696625 1.719916958814042E-05 1 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 106.42 0 0 8.5645 8.5645 96.204 0 0 0 25.55339660620689 73.43176178997484 25.55339660620689 29.06295947543775 0 2.2302046884880937 1.6989700043360187 0.4247425010840047 1.7302046884880937 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PRT[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YN]{I|L}PR{M(Oxidation (M))|F}PSH{I|L};[{M(Oxidation (M))|F}T]AAPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PR[HA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E;S{I|L}[HD]{M(Oxidation (M))|F}RP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WT]|[RM]}{I|L}SR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PVM{[QN]|[E{I|L}]|[KN]}[HK];[QP][YV]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PAAR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 8.5645;6.2257;5.71;5.0401;4.7795;4.5155;4.398;4.0578;4.0537;3.9263 +;-;-;-;-;-;-;-;-;- + 7255 NaN NaN 762198.2 NaN 15097 3647 18745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18747 77.65 NaN 685150 35 0 76096 0.261 -1 TPQFPDMIL 9 84 539.2679517160655 1076.5213504989308 2 539.267822265625 MULTI HCD FTMS 0 0 0 18745 269578 0.014421300244090796 71 -2.0494537353515625 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 29.84058131909904 0.11198220037953927 1 {M(Oxidation (M))|F}{I|L}TGTVN 7 -1 43.652 0 0 4.0549 0 0 326.159471580275 0 326.159471580275 0 17.604626047606935 0 0 0 1 0 0.4247425010840047 0 {M(Oxidation (M))|F}{I|L}TGTVN 4.0549 - 1257 NaN NaN 184407.9 NaN 15098 3647 18745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18748 77.653 NaN 589700 35 0 83333 0.261 -1 MPMNVADLI 9 70 510.2485960484421 1018.4826391636842 2 510.24871826171875 MULTI HCD FTMS 0 0 0 18745 316793.03125 0.9599834279518369 3 -0.0850372314453125 3 Oxidation (M) _MPM(Oxidation (M))NVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 39.94969957227396 0.06557568441294001 1 DV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}{I|L} 8 -1 48.351 0 0 4.7474 0 0 114.01675775113627 0 114.01675775113627 0 4.248650278674049 0 0 0 1.9247425010840047 0 1.5994850021680094 0 DV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}{I|L} 4.7474 - 208 + NaN NaN 181968 NaN 15099 3647 18745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18749 77.657 NaN 306860 35 0 19635 0.261 + 959 AYELTQYYF 9 82 599.2769943160254 1196.5394356988506 2 599.2766723632812 MULTI HCD FTMS 0 0 0 18745 128671.125 0.17135048188156285 7 -0.209014892578125 4 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 40.23920728925047 0.06424668180817725 1 {I|L}TQYY{M(Oxidation (M))|F} 6 3 50.015 0 0 4.18 0 0 363.1433277814469 0 363.1433277814469 0 21.070458572629036 0 0 0 2.110924374808178 0 0.3807196863200844 0 + {I|L}TQYY{M(Oxidation (M))|F} 4.18 + + 605 NaN NaN 126995.9 NaN 15100 3647 18745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18750 77.66 NaN 282540 35 0 21679 0.261 -1 0 67 556.2632720358929 555.2559955692928 1 557.2828369140625 MULTI HCD FTMS 0 0 0 18745 8689.025390625 0.2388453104932503 2 -0.05890655517578125 5 NaN NaN 1 [YN]{I|L} 3 -1 27.447 0 0 4.9432 0 0 0 162.04295305866376 162.04295305866376 9.030899869919438 0 0 0 0 0 2 0 0 [YN]{I|L} 4.9432 - 23 NaN NaN 123499.4 NaN 15101 3647 18745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18751 77.663 NaN 193320 35 0 21322 0.261 + 19998 NYIEIMPSVAE 11 47 633.3072872655251 1264.6000215978502 2 633.3064575195312 MULTI HCD FTMS 0 0 0 18745 37567.55078125 0.6011388223963613 -2 0.0549468994140625 6 Unmodified _NYIEIMPSVAE_ ENSG00000108379|ENST00000225512|WNT3 11.494710602746466 0.35692862141139436 1 [YN]{I|L} 3 8 31.695 0 0 2.5063 0 0 0 871.3867396977126 871.3867396977126 31.2101498947667 0 0 0 0 0.4247425010840047 2 0 0 + [YN]{I|L} 2.5063 + + 7 NaN NaN 109368 NaN 15102 3647 18745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18753 77.668 NaN 2440900 35 0 265560 0.327 + 13426 KYPENFFLL 9 112 585.8132425088911 1169.6119320845821 2 585.8137817382812 MULTI HCD FTMS 0 0 0 18752 1920366.625 0.00968616084128422 81 -2.33734130859375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 95.746 0 0 8.1861 8.1861 90.747 0 0 0 10.15265412652576 66.89363014611827 10.15265412652576 8.855896941052762 0 2.5114393726401687 0 0.3054621874040891 2.0743923658886185 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 8.1861;7.4289;7.3988;7.2558;6.9075;6.6417;6.4987;6.4686;6.2217;6.1203 +;-;-;-;-;-;-;-;-;- + 6484 NaN NaN 455489 NaN 15103 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18754 77.672 NaN 1778900 35 0 380840 0.261 + 1726 CITSPFRWTF 10 122 629.3066532826065 1256.5987536320129 2 629.3056030273438 MULTI HCD FTMS 0 0 0 18752 1176459.375 1 0 0 2 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 53.40400417844725 0.06540992187319636 1 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 10 -1 + 71.507 0 0 5.6905 5.6905 89.228 0 0 0 2.498774732165998 44.13352767772192 2.498774732165998 12.830145895351848 0 2.4177353201839438 0 1.066901560044258 0.3807196863200844 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{I|L}S{[CT]|[{M(Oxidation (M))|F}G]}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VG]PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[EC]{I|L}RR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[EC]{I|L}RR{M(Oxidation (M))|F}[VS]T{M(Oxidation (M))|F};{I|L}S[WD]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[RV]H{[HG]|PP}T{M(Oxidation (M))|F};{I|L}{[CA]|SS}[DV]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PRR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PRR{M(Oxidation (M))|F}[VS]T{M(Oxidation (M))|F} 5.6905;4.6695;4.0005;3.675;3.675;3.4736;3.1121;2.7941;2.7433;2.7433 -;-;-;-;-;-;-;-;-;- 2709 NaN NaN 351632.8 NaN 15104 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18755 77.676 NaN 338060 35 0 19509 0.264 + 12395 KPGKGARAE 9 67 457.2642199679544 912.5138870027088 2 457.264404296875 MULTI HCD FTMS 0 0 0 18752 416568.40625 0.5791600152551974 55 -1.6036453247070312 3 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 QV 2 9 16.766 0 0 1.8373 0 0 414.2462252335428 268.1240328424438 682.3702580759866 0 0 0 0 0 0.7302046884880937 0 0 0 QV 1.8373 - 46 + NaN NaN 126972.5 NaN 15105 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18756 77.679 NaN 203070 35 0 14028 0.261 -1 0 65 556.2632720358929 555.2559955692928 1 557.2843017578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 [YN]{I|L}V 4 -1 29.297 0 0 5.2763 0 0 0 62.976229180006875 62.976229180006875 13.812281309285623 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L}V 5.2763 - 29 NaN NaN 122708.8 NaN 15106 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18757 77.683 NaN 303990 35 0 42890 0.261 + 7455 FVTWIEGVM 9 64 549.2710188993345 1096.527484865469 2 549.2705078125 MULTI HCD FTMS 0 0 0 18752 109406.6953125 0.6224308055236998 -1 0.022796630859375 5 Oxidation (M) _FVTWIEGVM(Oxidation (M))_ ENSG00000122194|ENST00000308192|PLG 100.37149154755038 0.004254194004462789 1 Q{M(Oxidation (M))|F}Q{I|L}EGV{M(Oxidation (M))|F} 8 4 61.861 0 0 5.6415 0 0 130.06331133971952 0 130.06331133971952 0 46.287756685520094 0 0 0 1.8252574989159953 0 0.4247425010840047 0 Q{M(Oxidation (M))|F}Q{I|L}EGV{M(Oxidation (M))|F} 5.6415 - 541 + NaN NaN 128181.7 NaN 15107 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18758 77.686 NaN 147400 35 0 51761 0.262 + 5610 FLVGLRSR 8 34 474.2909903160579 NaN 0 474.290771484375 PEAK HCD FTMS 0 0 0 18752 54086.77734375 0.3288974358560194 7 -0.21910858154296875 6 Unmodified _FLVGLRSR_ REV__ENSG00000124257|ENST00000372518|NEURL2 1.844237919475145 0.38822285293237185 1 {I|L} 1 -1 5.4846 0 0 0.57941 0 0 416.2331514311408 414.22614465885005 830.4592960899909 0 0 0 0 0 0 0 0 0 {I|L} 0.57941 + + 1 + NaN NaN 108540.2 NaN 15108 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18759 77.689 NaN 141890 35 0 9140 0.261 + 4319 EVSVATTTK 9 56 468.25531759659395 NaN 0 468.2554626464844 PEAK HCD FTMS 0 0 0 18752 53268.44140625 0.9942533793239916 1 -0.03610992431640625 7 Unmodified _EVSVATTTK_ ENSG00000084674|ENST00000233242|APOB 7.289230182591677 0.2599242500475609 1 S 1 8 6.9897 0 0 0.74796 0 0 619.3530596543224 225.0877627008422 844.4408223551645 0 0 0 0 0 0 0 0 0 + S 0.74796 + + 62 + NaN NaN 113650.5 NaN 15109 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18760 77.693 NaN 195850 35 0 19469 0.261 + 33541 YIIVGLVIAF 10 67 554.3441534132147 1106.6737538932293 2 554.3438110351562 MULTI HCD FTMS 0 0 0 18752 69518.296875 0.09834911147015594 26 -0.766448974609375 8 Unmodified _YIIVGLVIAF_ REV__chr11:70141705-70149710|430|17.13|0.99|4.11|+|ENST00000531300|ANO1,ANO1;REV__ENSG00000131620|ENST00000355303|ANO1;REV__nc|ENSG00000131620|Q5XXA6-2|ANO1;REV__nc|ENSG00000131620|Q5XXA6-3|ANO1;REV__nc|ENSG00000131620|Q5XXA6-4|ANO1;REV__nc|ENSG00000131620|Q5XXA6-5|ANO1 12.531546534597751 0.39389615866941496 1 [Y{I|L}]W{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 32.267 0 0 2.9157 0 0 0 129.23701716428903 129.23701716428903 16.782891498745585 0 0 0 0 0.5 1.6989700043360187 0.7302046884880937 0 [Y{I|L}]W{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9157 - 106 NaN NaN 134322.6 NaN 15110 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18761 77.696 NaN 126720 35 0 32473 0.262 + 6035 FPDTPLAL 8 50 437.23933244578126 872.4641119583625 2 437.2392578125 MULTI HCD FTMS 0 0 0 18752 65694.4765625 0.33942392217910267 -12 0.29203033447265625 9 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 19.438996006549623 0.45076845602799126 1 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3326097384391 0 670.3326097384391 0 10 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 31 + NaN NaN 115337.6 NaN 15111 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18762 77.699 NaN 688950 35 0 51664 0.261 + 7429 FVSPFLAW 8 93 483.757914545755 965.50127615831 2 483.7576904296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _FVSPFLAW_ REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF 40.44857923139169 0.22516712537107883 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPK 7 -1 51.431 0 0 5.3269 0 0 0 160.04062472266165 160.04062472266165 17.291134871374815 0 0 0 0 1.5994850021680094 1.3010299956639813 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPK 5.3269 - 890 NaN NaN 194719.4 NaN 15112 3648 18752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18764 77.704 NaN 655440 35 0 70158 0.327 + 3289 EEFGQAFSF 9 67 531.2324875821478 1060.4504222310954 2 531.2325439453125 MULTI HCD FTMS 0 0 0 18763 355428.75 0.2086678510182743 5 -0.15010833740234375 1 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 140.63315402491853 1.8728231636916273E-05 1 EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 85.896 0 0 8.0999 8.0999 91.579 0 0 0 54.18288994378777 11.210149894766701 11.210149894766701 9.208187539523749 0 2.5994850021680094 0 1.829689690656103 0 + + EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}G[AG]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[RN]EAQG[HC]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[WE]{[MG]|[TS]}S{M(Oxidation (M))|F};[RN]EAQ[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{[QG]|[NA]}EE{M(Oxidation (M))|F};[RN]EA[AG]G[HC]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}A{[QG]|[NA]}EE{M(Oxidation (M))|F};[RN]EA[AG][C(Carbamidomethyl (C))H]{M(Oxidation (M))|F} 8.0999;7.2316;5.5561;4.2768;4.0186;3.8331;3.7505;3.4085;3.1827;2.9597 +;-;-;-;-;-;-;-;-;- + 847 + NaN NaN 186364.6 NaN 15113 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18765 77.709 NaN 827790 35 0 191900 0.261 + 6481 FPIPGEPGF 9 47 480.74557682542917 959.4766007176584 2 480.74493408203125 MULTI HCD FTMS 0 0 0 18763 483619.90625 0.6576634750358923 9 -0.2681732177734375 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 77.98433622928108 0.006504613272346738 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 68.976 0 0 7.1889 7.1889 93.714 0 0 0 7.147642715192504 40.788493772929044 7.147642715192504 25.168344045268753 0 2.4361818737241734 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F};N[KG][{I|L}V]EPG{M(Oxidation (M))|F} 7.1889;4.5658 +;- + 138 NaN NaN 215871.6 NaN 15114 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18766 77.712 NaN 819260 35 0 119080 0.261 + 26660 SYADQMFLL 9 85 552.2576368980135 1102.500720862827 2 552.2577514648438 MULTI HCD FTMS 0 0 0 18763 537884.1875 0.12912494333813396 27 -0.7928085327148438 3 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 67.83816525789305 0.009787749748478139 1 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 89.263 0 0 8.0964 8.0964 91.568 0 0 0 14.528937514676485 16.478174818886373 14.528937514676485 9.208187539523749 0 1.8807196863200843 1.6989700043360187 1.1861818737241734 0 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]G[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT]SAA[DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT][QT][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L} 8.0964;7.2612;6.7786;6.3702;5.9434;5.535;5.0554;4.5028;4.2824;3.7376 -;-;+;-;-;-;-;-;-;- + 1249 NaN NaN 202801.1 NaN 15115 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18767 77.715 NaN 583290 35 0 110780 0.261 + 26798 SYIDLLQRF 9 86 577.813754900544 1153.612956867888 2 578.30078125 MULTI HCD FTMS 0 0 0 18763 28795.712890625 0.029802024824487613 27 -0.7928085327148438 4 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 38.175570920033316 0.07371992880350783 1 PTPTDT{I|L}V{M(Oxidation (M))|F} 9 7 50.817 0 0 4.4051 0 0 164.10445628697227 0 164.10445628697227 0 8.817818051233957 0 0 0 0.3494850021680094 0 0.7302046884880937 0 PTPTDT{I|L}V{M(Oxidation (M))|F} 4.4051 - 1492 + NaN NaN 170331.8 NaN 15116 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18768 77.719 NaN 334270 35 0 70343 0.261 + 5474 FIRDKFLL 8 65 526.3187500562756 1050.622947179351 2 526.3187255859375 MULTI HCD FTMS 0 0 0 18763 199550.484375 0.18519747195159542 8 -0.2420196533203125 5 Unmodified _FIRDKFLL_ REV__ENSG00000137674|ENST00000260228|MMP20 36.04419817259434 0.28174663821216267 1 AT{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 52.735 0 0 5.0194 0 0 487.2895985334 0 487.2895985334 0 35.74539712336197 0 0 0 1.4247425010840047 0 0.805462187404089 0 AT{M(Oxidation (M))|F}{I|L}{I|L} 5.0194 - 172 NaN NaN 136809.2 NaN 15117 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18769 77.722 NaN 218100 35 0 11975 0.261 + 26817 SYIEHIFEI 9 65 575.7926634449356 NaN 0 575.7930297851562 PEAK HCD FTMS 0 0 0 18763 33196.3359375 0.32911135238831124 -4 0.11385345458984375 6 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 19.256988751693697 0.19238547928067054 1 E{I|L}YH 4 7 16.938 0 0 1.4734 0 0 131.0924318054628 473.20701013736567 604.2994419428285 0 0 0 0 0 0 0 0 0 E{I|L}YH 1.4734 - 147 + NaN NaN 126589.5 NaN 15118 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18770 77.725 NaN 251990 35 0 55960 0.261 -1 VYMLAASLL 9 51 498.77486082376004 995.5351687143201 2 498.7761535644531 MULTI HCD FTMS 0 0 0 18763 40773.953125 0.8497547155987203 -9 0.2308502197265625 7 Oxidation (M) _VYM(Oxidation (M))LAASLL_ ENSG00000143753|ENST00000323699|DEGS1 30.224811164608877 0.11021837014094292 1 [VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}AS{I|L}{I|L} 9 -1 + 39.988 0 0 4.0168 4.0168 89.22 0 0 0 7.147642715192511 26.00887809210044 7.147642715192511 39.98827817882081 0 1.3182503180159344 0 0.3494850021680094 0 [VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}AS{I|L}{I|L} 4.0168 - 185 NaN NaN 126437.6 NaN 15119 3649 18763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18772 77.73 NaN 7856900 35 0 1343000 0.327 + 13735 KYPSPFFVF 9 99 566.297318493246 1130.580084053292 2 566.2977905273438 MULTI HCD FTMS 0 0 0 18771 4950363.5 0.057679227075880246 24 -0.7042083740234375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 134.295615338601 0.00034446139420701925 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 94.065 0 0 8.32 8.32 93.635 0 0 0 12.394257603872077 12.394257603872077 12.394257603872077 12.394257603872077 0 2.7302046884880937 0 1.086696871556164 1.031234684152075 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]P{M(Oxidation (M))|F}SAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.32;7.2238;7.1241;6.062;5.904;5.7234;5.3962;5.0195;4.8319;4.7516 +;-;-;-;-;-;-;-;-;- + 8111 NaN NaN 631682.9 NaN 15120 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18773 77.735 NaN 3743000 35 0 608010 0.214 + 32260 VYTVVDEMFL 10 98 616.3001103953502 1230.5856678575003 2 616.3004150390625 MULTI HCD FTMS 0 0 0 18771 2184363.5 0.600659556882433 2 -0.05823516845703125 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 127.62 0 0 10.37 10.37 91.857 0 0 0 5.981362441963327 9.018637558036673 5.981362441963327 5.981362441963327 0 3.1861818737241734 1.6989700043360187 2.841129063296272 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]TVVD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};[YV]TVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]SVVD{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F};{I|L}YSVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L} 10.37;9.8844;9.7091;9.6841;9.6376;9.2231;9.1515;8.9763;8.9691;8.6301 -;+;-;-;-;-;-;-;-;- + 8620 NaN NaN 471793.2 NaN 15121 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18774 77.737 NaN 982410 35 0 170700 0.261 + -1 SHYHSKLLMSG 11 99 638.3114108957272 1274.6082688582544 2 638.3113403320312 MULTI HCD FTMS 0 0 0 18771 688401.1875 0.7200058440234075 2 -0.05823516845703125 3 Oxidation (M) _SHYHSKLLM(Oxidation (M))SG_ REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense 29.84058131909904 0.20237991466741817 1 NY{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 -1 + 72.797 0 0 5.7113 5.7113 84.755 0 0 0 4.665966544352273 4.665966544352273 4.665966544352273 4.665966544352273 0 2.337180496500464 1.5228787452803376 0.9916440611282626 0 NY{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}{[RE]|[WV]}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[CA]|SS}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}ER[HV]D{[ET]|[MV]};[{M(Oxidation (M))|F}T]AAER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}GQ{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D[HV]RP{I|L}{M(Oxidation (M))|F}[SG];NY{I|L}E[HQ]{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]};[{M(Oxidation (M))|F}T]AA{M(Oxidation (M))|F}{[RE]|[WV]}WT{M(Oxidation (M))|F} 5.7113;5.3453;4.8905;3.2663;3.1391;2.899;2.6483;2.5615;2.5347;2.4442 -;-;-;-;-;-;-;-;-;- 2009 + NaN NaN 236161.3 NaN 15122 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18775 77.741 NaN 1831100 35 0 264070 0.261 + 9154 HPIETLVDIF 10 90 592.3214097750489 1182.6282666168977 2 592.321533203125 MULTI HCD FTMS 0 0 0 18771 617869.125 0.6206363095657376 3 -0.097747802734375 4 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 43.85829265575387 0.11192494793849486 1 VD{I|L}{M(Oxidation (M))|F} 4 6 43.73 0 0 3.6977 0 0 690.3720096226294 0 690.3720096226294 0 -0.09250301305293362 -0.09250301305293362 0 0 1.305462187404089 0 0.3252574989159953 0 + VD{I|L}{M(Oxidation (M))|F} 3.6977 + + 897 NaN NaN 376593.4 NaN 15123 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18776 77.744 NaN 173630 35 0 15057 0.263 + 14112 LAAARSRSV 9 66 465.77750548458 929.54045803596 2 465.7774963378906 MULTI HCD FTMS 0 0 0 18771 164407.28125 0.5916508811618012 1 -0.02869415283203125 5 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 3.5964929083625545 0.32375295897743744 1 QV 2 -1 6.4537 0 0 0.69428 0 0 431.27185559631 268.1235445611938 699.3954001575038 0 0 0 0 0 0 0 0 0 QV 0.69428 - 13 + NaN NaN 114134.8 NaN 15124 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18777 77.747 NaN 324080 35 0 21318 0.261 + 17593 LYWHRAVFP 9 74 594.8179877001214 1187.6214224670427 2 594.8063354492188 MULTI HCD FTMS 0 0 0 18771 19491.009765625 0.8698441838860607 -5 0.139984130859375 6 Unmodified _LYWHRAVFP_ ENSG00000136051|ENST00000332180|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF;nc|ENSG00000136051|Q2M389-2|WASHC4 18.13498045792455 0.20367413111508956 1 {I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 5 7 38.232 0 0 3.2192 0 0 547.274705955275 0 547.274705955275 0 14.701140738196017 0 0 0 0 0 0.805462187404089 0 {I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 3.2192 - 726 NaN NaN 147192.6 NaN 15125 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18778 77.751 NaN 555020 35 0 108070 0.261 + 33275 YFLKGVLVF 9 81 543.3234229329513 1084.6322929327025 2 543.3234252929688 MULTI HCD FTMS 0 0 0 18771 209092.4375 0.556539197789999 -3 0.0850372314453125 7 Unmodified _YFLKGVLVF_ ENSG00000031698|ENST00000234677|SARS1 57.47134341890925 0.0211188941628804 1 {I|L}KR{I|L}V{M(Oxidation (M))|F} 6 4 61.503 0 0 5.6704 0 0 310.13149165368384 0 310.13149165368384 0 38.571231544599485 0 0 0 2.1861818737241734 0 0 0 {I|L}KR{I|L}V{M(Oxidation (M))|F} 5.6704 - 496 NaN NaN 172028.6 NaN 15126 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18779 77.754 NaN 198130 35 0 87049 0.262 -1 0 45 448.23037087530685 894.4461888174137 2 448.230712890625 MULTI HCD FTMS 0 0 0 18771 22920.205078125 0.21101284265652734 -9 0.244293212890625 8 NaN NaN 1 M{I|L} 2 -1 40.445 0 0 4.5218 0 0 0 647.3030013415015 647.3030013415015 22.486512420283233 0 0 0 0 0.4247425010840047 2 0 0 M{I|L} 4.5218 - 8 + NaN NaN 110751.7 NaN 15127 3650 18771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18781 77.759 NaN 2018100 35 0 325680 0.327 + 9155 HPIETLVDIF 10 89 592.3214097750489 1182.6282666168977 2 591.8046264648438 MULTI HCD FTMS 0 0 0 18780 143098.8125 1 0 0 1 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 21.536976647645854 0.3096624038397699 1 T{I|L}DV[RK]TTW 9 9 42.335 0 0 3.5797 0 0 64.03256254234255 0 64.03256254234255 0 4.480071641894199 0 0 0 0.9604093769761877 0 0.3054621874040891 0 T{I|L}DV[RK]TTW 3.5797 - 1770 + NaN NaN 395222.9 NaN 15128 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18782 77.763 NaN 298140 35 0 26729 0.261 + 29196 TYKNFFYLI 9 78 604.8217660890509 1207.6289792449018 2 604.8217163085938 MULTI HCD FTMS 0 0 0 18780 111988.703125 0.23603839277733965 7 -0.213348388671875 2 Unmodified _TYKNFFYLI_ ENSG00000011405|ENST00000691414|PIK3C2A 38.61474834105838 0.07170385841135779 1 [YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 74.958 0 0 6.207 6.207 88.284 0 0 0 17.236286549994652 49.271632887183785 17.236286549994652 9.208187539523749 0 1.774227503252014 1.3979400086720375 0 0.3807196863200844 + + [YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YK]TN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YK]TGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{[RE]|[WV]}[R{I|L}]{M(Oxidation (M))|F}{I|L}{I|L} 6.207;5.4445;4.5519;3.7894;0.67394 +;-;-;-;- + 479 NaN NaN 121786.8 NaN 15129 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18783 77.767 NaN 185900 35 0 23719 0.261 + 25094 SAENLEEFENC 11 60 642.7551473035007 1283.4957416738014 2 642.7551879882812 MULTI HCD FTMS 0 0 0 18780 96897.8125 0.47183324165184926 7 -0.213348388671875 3 Unmodified _SAENLEEFENC_ CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46 2.282774691075616 0.408909192180357 1 S 1 10 10.969 0 0 0.85463 0 0 722.1798980232139 471.2611178033813 1193.4410158265953 0 0 0 0 0 0.5 0 0.3494850021680094 0 + S 0.85463 + + 21 + NaN NaN 118810.4 NaN 15130 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18784 77.77 NaN 131250 35 0 6283.6 0.264 -1 0 48 408.6751387629391 815.3357245926783 2 408.6753845214844 MULTI HCD FTMS 0 0 0 18780 44480.5390625 0.6231750937004962 2 -0.06905364990234375 4 NaN NaN 1 W 1 -1 6.9897 0 0 0.85728 0 0 162.0882767222394 464.1361483209594 626.2244250431988 0 0 0 0 0 0 0 0 0 W 0.85728 - 3 + NaN NaN 103012.8 NaN 15131 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18785 77.774 NaN 214160 35 0 13282 0.261 + 29526 TYVYFTNEL 9 81 575.2779125205633 NaN 0 575.2666625976562 PEAK HCD FTMS 0 0 0 18780 18283.6328125 0.5580462343047596 -1 0.02869415283203125 5 Unmodified _TYVYFTNEL_ ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10 18.373094154950223 0.19831836980174267 1 PQC{M(Oxidation (M))|F}Y{I|L} 6 7 24.875 0 0 2.1658 0 0 147.09180537434196 247.07268701724846 394.16449239159044 0 0 0 0 0 0.805462187404089 0 0 0.2742275032520141 PQC{M(Oxidation (M))|F}Y{I|L} 2.1658 - 563 + NaN NaN 124104.2 NaN 15132 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18786 77.777 NaN 419700 35 0 35430 0.262 + 26047 SPEPLEAIL 9 76 484.76889664415353 967.5232403551071 2 484.768310546875 MULTI HCD FTMS 0 0 0 18780 30789.2890625 0.6164908927085354 -2 0.0548248291015625 6 Unmodified _SPEPLEAIL_ ENSG00000119866|ENST00000642384|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;nc|ENSG00000119866|Q9H165-8|BCL11A 20.453626601364224 0.18364154288633264 1 [PS][EP]{I|L}EA{I|L}{I|L} 9 0 + 34.262 0 0 3.5412 3.5412 86.261 0 0 0 13.287367613688922 18.231457247781652 13.287367613688922 13.518054197702874 0 0.3807196863200844 1.5228787452803376 0.4247425010840047 0 + + [PS][EP]{I|L}EA{I|L}{I|L};[PS][EP]RRN{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[NV]|[RG]}[HK]N{I|L};[VS][RD][HK]N{I|L};[{M(Oxidation (M))|F}V][NP][HK]N{I|L} 3.5412;2.144;2.1176;1.3352;0.68789 +;-;-;-;- + 393 NaN NaN 157465.9 NaN 15133 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18787 77.78 NaN 121930 35 0 9694 0.261 + 30382 VLKSVTTFP 9 38 496.2947762945517 990.5749996559034 2 496.2948913574219 MULTI HCD FTMS 0 0 0 18780 29284.978515625 0.2964872904377384 7 -0.213348388671875 7 Unmodified _VLKSVTTFP_ REV__MED24|p.E954K|1|0.33|ENSG00000008838|chr17:40019639-40019639|C/T|missense_variant 4.3292370932331545 0.3181982124262546 1 YTT 3 -1 18.5 0 0 1.8676 0 0 100.13670163131106 522.2558687799436 622.3925704112547 0 0 0 0 0 0 0 0.3807196863200844 0 YTT 1.8676 - 20 + NaN NaN 97995.3 NaN 15134 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18788 77.784 NaN 167720 35 0 29002 0.261 + 21162 PPPSDKRR 8 41 476.768391025475 NaN 0 476.7685852050781 PEAK HCD FTMS 0 0 0 18780 10746.248046875 0.4097405594583698 1 -0.029541015625 8 Unmodified _PPPSDKRR_ REV__ENSG00000135976|ENST00000420699|ANKRD36;REV__ENSG00000174501|ENST00000295246|ANKRD36C;REV__ENST00000421951.5_1_2:89072537-89077837:+|nuORF;REV__ENST00000534304.5_1_2:96525807-96601268:-|nuORF;REV__nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C 5.760428011301431 0.38822285293237185 1 S 1 -1 6.1536 0 0 0.64671 0 0 573.3321789241938 288.13523279361567 861.4674117178095 0 0 0 0 0 0 0 0.3054621874040891 0 S 0.64671 + + 9 + NaN NaN 106644.9 NaN 15135 3651 18780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18790 77.789 NaN 6820900 35 0 1859200 0.326 + 20061 NYIPRFWTF 9 104 622.3163957915608 1242.6182386499215 2 622.3165283203125 MULTI HCD FTMS 0 0 0 18789 4497811 0.32747329538910164 4 -0.12482452392578125 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 129.77232118876745 0.0006187813247758304 1 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 101.42 0 0 8.1621 8.1621 95.323 0 0 0 25.9767302917421 16.478174818886373 16.478174818886373 25.9767302917421 0 2.1307196863200843 1.6989700043360187 0 1.805462187404089 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]NPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]GGPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[VS]PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PD[H{I|L}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WT]|[RM]}{[TV]|[{I|L}S]}R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[MT]VRR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[QP][YV]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PAAR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 8.1621;6.0716;5.0242;4.8892;4.7475;4.3723;3.7836;3.6754;3.6512;3.5825 +;-;-;-;-;-;-;-;-;- + 6378 NaN NaN 540760.2 NaN 15136 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18791 77.793 NaN 1567500 35 0 143640 0.261 + -1 MELHYDCVF 9 124 607.254372919939 1212.4941929066779 2 607.2548828125 MULTI HCD FTMS 0 0 0 18789 779519 0.7947638117273871 2 -0.06574249267578125 2 Carbamidomethyl (C) _MELHYDC(Carbamidomethyl (C))VF_ REV__ENSG00000177728|ENST00000314256|TMEM94;REV__ENST00000581085.5_1_17:73467944-73489290:+|nuORF;REV__ENST00000583071.1_1_17:73488566-73488914:+|nuORF;REV__ENST00000585105.5_1_17:73482215-73489290:+|nuORF;REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant;REV__nc|ENSG00000177728|Q12767-2|TMEM94;REV__nc|ENSG00000177728|Q12767-3|TMEM94 7.910154910731844 0.2910521888787154 1 [QP]{I|L}SVDW{M(Oxidation (M))|F} 8 -1 46.691 0 0 3.8508 0 0 0 237.00080286197502 237.00080286197502 7.689620237408107 0 0 0 0 1.309894379144197 0 0.5796896906561032 0 [QP]{I|L}SVDW{M(Oxidation (M))|F} 3.8508 - 2269 + NaN NaN 331504.4 NaN 15137 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18792 77.797 NaN 503350 35 0 73193 0.261 -1 TPQFPDMIL 9 62 539.2679517160655 1076.5213504989308 2 539.2680053710938 MULTI HCD FTMS 0 0 0 18789 313280.78125 0.01675921702479275 76 -2.18731689453125 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 23.789781309258295 0.1548179064208189 1 {M(Oxidation (M))|F}[{I|L}T]GG[SG]{I|L} 8 -1 27.691 0 0 2.5722 0 0 326.1577320783219 0 326.1577320783219 0 25.81883171732979 0 0 0 1 0 0.7302046884880937 0 {M(Oxidation (M))|F}[{I|L}T]GG[SG]{I|L} 2.5722 - 113 NaN NaN 157685.6 NaN 15138 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18793 77.8 NaN 566490 35 0 107420 0.261 -1 YYMDYLAAL 9 52 569.7595024113915 1137.504451889583 2 569.759521484375 MULTI HCD FTMS 0 0 0 18789 326338.625 0.5799213342653982 -3 0.0843658447265625 4 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 26.88365393820708 0.12808753336095696 1 {I|L}AA{I|L} 4 -1 46.938 0 0 4.1264 0 0 751.2532781922276 0 751.2532781922276 0 26.928031367991565 0 0 0 1.5 0 0 0 {I|L}AA{I|L} 4.1264 + + 84 NaN NaN 168784.2 NaN 15139 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18794 77.803 NaN 785380 35 0 71914 0.261 + 6253 FPFAVANQL 9 80 503.77175706718924 1005.5289612011785 2 503.7716979980469 MULTI HCD FTMS 0 0 0 18789 224348.71875 0.6924926927675037 -3 0.0843658447265625 5 Unmodified _FPFAVANQL_ ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 123.09622228370866 0.0010236603636890153 1 QDAVANAG{I|L} 9 5 58.56 0 0 5.8238 0 0 148.1189891753093 0 148.1189891753093 0 43.95541595365842 0 0 0 2.416386562212267 0 0 0.9604093769761877 QDAVANAG{I|L} 5.8238 - 466 + NaN NaN 194172.7 NaN 15140 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18795 77.807 NaN 278630 35 0 56286 0.262 -1 0 62 404.18801292452684 806.3614729158537 2 404.18829345703125 MULTI HCD FTMS 0 0 0 18789 115472.6875 0.30383371628506345 22 -0.6459732055664062 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.7336 0 0 641.2825677418288 0 641.2825677418288 0 9.3753063169585 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7336 - 4 + NaN NaN 118177.9 NaN 15141 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18796 77.81 NaN 361960 35 0 24603 0.261 + -1 YVARCDREDC 10 65 643.765598796343 1285.516644659486 2 643.7667846679688 MULTI HCD FTMS 0 0 0 18789 77629.5703125 0.46588943916702974 -4 0.12047576904296875 7 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 9.38312468134398 0.42334543440173333 1 [YV]AS{M(Oxidation (M))|F}[{I|L}A]{M(Oxidation (M))|F} 8 -1 65.64 0 0 5.1061 0 0 0 384.01759615778604 384.01759615778604 40.017346757967545 0 0 0 0 2.5 1.6989700043360187 1.1421590589602533 0 [YV]AS{M(Oxidation (M))|F}[{I|L}A]{M(Oxidation (M))|F} 5.1061 - 281 NaN NaN 139132.4 NaN 15142 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18797 77.813 NaN 195520 35 0 18626 0.263 + 5980 FPDQVAIQL 9 58 515.7819977459875 1029.549442558775 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18789 48279.39453125 0.014122392787265993 44 -1.2753067016601562 8 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 24.990960013464015 0.14443998892849796 1 A{I|L}Q{I|L} 4 5 50.745 0 0 4.9289 0 0 586.2757435529312 0 586.2757435529312 0 29.06295947543775 0 0 0 1.5 0 0 0.3807196863200844 + A{I|L}Q{I|L} 4.9289 + + 178 NaN NaN 116133.6 NaN 15143 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18798 77.817 NaN 116210 35 0 21078 0.261 -1 0 55 501.29058431079056 1000.5666156883811 2 501.29107666015625 MULTI HCD FTMS 0 0 0 18789 72134.375 0.12680717947388231 -35 0.7971954345703125 9 NaN NaN 1 V 1 -1 5.4846 0 0 0.54814 0 0 130.11112360029364 768.3593233697874 898.470446970081 0 0 0 0 0 0 0 0 0 V 0.54814 - 11 + NaN NaN 116161.1 NaN 15144 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18799 77.82 NaN 154230 35 0 12021 0.261 + 7473 FVVFFAIYL 9 59 559.8160347599982 NaN 0 559.8160400390625 PEAK HCD FTMS 0 0 0 18789 24619.74609375 0.2136316956085725 12 -0.357940673828125 10 Unmodified _FVVFFAIYL_ ENSG00000206536|ENST00000383695|OR5K3;ENSG00000231861|ENST00000427338|OR5K2;ENSG00000232382|ENST00000642057|OR5K1 14.581692164780916 0.22376707489839515 1 Y{I|L} 2 7 19.464 0 0 1.7416 0 0 131.09329337367643 707.3521212213499 838.4454145950263 0 0 0 0 0 0.8494850021680094 0 0 0 + Y{I|L} 1.7416 + + 61 + NaN NaN 118130.9 NaN 15145 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18800 77.823 NaN 74945 35 0 6021.4 0.261 + 25839 SLVLIMWL 8 54 487.79083696454876 NaN 0 487.79058837890625 PEAK HCD FTMS 0 0 0 18789 32592.37109375 0.3492868536663945 8 -0.2429962158203125 11 Unmodified _SLVLIMWL_ tr|U7SSH6|U7SSH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01271PE=4SV=1 0.7936320650641473 0.38822285293237185 1 {I|L}GM 3 6 10.802 0 0 1.1095 0 0 130.11547412265378 539.2726534479124 669.3881275705662 0 0 0 0 0 0 0 0 0 {I|L}GM 1.1095 - 12 + NaN NaN 92963.7 NaN 15146 3652 18789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18802 77.828 NaN 3152200 35 0 292420 0.326 + 13427 KYPENFFLL 9 117 585.8132425088911 1169.6119320845821 2 585.8134155273438 MULTI HCD FTMS 0 0 0 18801 2233242.5 0.011264279315722681 86 -2.4740524291992188 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 87.849 0 0 7.511 7.511 90.689 0 0 0 8.530286658951738 29.455603893746016 8.530286658951738 9.208187539523749 0 2.504432191740108 0 0.25 1.5902280322290656 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]D[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.511;6.7237;6.5201;6.1708;5.9554;5.7328;5.5279;5.4707;5.3835;5.18 +;-;-;-;-;-;-;-;-;- + 9179 NaN NaN 565078.7 NaN 15147 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18803 77.832 NaN 566090 35 0 123080 0.261 + 1727 CITSPFRWTF 10 87 629.3066532826065 1256.5987536320129 2 629.3060913085938 MULTI HCD FTMS 0 0 0 18801 363643.5 0.30909992110862305 5 -0.14429473876953125 2 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 49.55428908609986 0.07941048486997417 1 {I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 7 -1 51.361 0 0 4.0873 0 0 291.0854664533219 0 291.0854664533219 0 26.439462122898746 0 0 0 1.9876954943324545 0 0.3252574989159953 0.3494850021680094 {I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 4.0873 - 262 NaN NaN 181507.9 NaN 15148 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18804 77.836 NaN 304950 35 0 15294 0.264 + 12396 KPGKGARAE 9 78 457.2642199679544 912.5138870027088 2 457.26416015625 MULTI HCD FTMS 0 0 0 18801 301750.34375 0.41952709583220116 60 -1.7257080078125 3 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 Q 1 9 12.787 0 0 1.4012 0 0 414.24640236675657 367.1968007830057 781.4432031497622 0 0 0 0 0 0.7302046884880937 0 0 0 Q 1.4012 - 63 + NaN NaN 126642.9 NaN 15149 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18805 77.839 NaN 271660 35 0 42060 0.261 -1 MPMNVADLI 9 55 510.2485960484421 1018.4826391636842 2 510.24871826171875 MULTI HCD FTMS 0 0 0 18801 146413.515625 0.44367942083059103 9 -0.26261138916015625 4 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 29.081581746732265 0.1154664336125038 1 AD{I|L}{I|L} 4 -1 46.186 0 0 4.5347 0 0 588.240748867829 0 588.240748867829 0 44.59183145787911 0 0 0 1.4247425010840047 0 0 0 AD{I|L}{I|L} 4.5347 + + 36 NaN NaN 126948 NaN 15150 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18806 77.843 NaN 291110 35 0 38354 0.261 -1 LYMPKLLYF 9 51 602.3272894837432 NaN 0 602.3139038085938 PEAK HCD FTMS 0 0 0 18801 16581.73828125 0.29192313833990247 10 -0.2788848876953125 5 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 11.640296217721598 0.23883959125015683 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 -1 10.713 0 0 0.89082 0 0 165.10577301667473 463.20942102603755 628.3151940427123 0 0 0 0 0 0 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 0.89082 - 27 + NaN NaN 137602.4 NaN 15151 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18807 77.846 NaN 209040 35 0 12048 0.261 -1 KMKFSNEVF 9 71 573.2865915677346 1144.5586302022691 2 573.286865234375 MULTI HCD FTMS 0 0 0 18801 54327.546875 0.051256331558433135 22 -0.6360244750976562 6 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 9.38312468134398 0.279288223203164 1 S{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 -1 33.66 0 0 2.9409 0 0 646.3677845685562 0 646.3677845685562 0 22.97351302099152 0 0 0 0.9247425010840047 0 0 0 S{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.9409 - 334 NaN NaN 120533.4 NaN 15152 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18808 77.849 NaN 188760 35 0 10755 0.261 + 960 AYELTQYYF 9 78 599.2769943160254 1196.5394356988506 2 599.2763671875 MULTI HCD FTMS 0 0 0 18801 41389.74609375 0.055118449754127795 13 -0.36414337158203125 7 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 38.175570920033316 0.07371992880350783 1 [Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F} 9 2 + 47.902 0 0 4.0033 4.0033 86.43 0 0 0 5.976818486582118 19.48515608797898 5.976818486582118 12.460762528683702 0 1.610924374808178 1.2218487496163564 0 0.3252574989159953 [Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}T[AG]YY{M(Oxidation (M))|F};[YV][DV]TQYY{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{[ES]|[DT]|[{I|L}C]}YY{M(Oxidation (M))|F};[YV][DV]T[AG]YY{M(Oxidation (M))|F};[YV][DN][{I|L}T]YY{M(Oxidation (M))|F};[YV]{[QV]|[N{I|L}]|[RA]|[KV]}{[ES]|[DT]|[{I|L}C]}YY{M(Oxidation (M))|F};[YG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVHH{M(Oxidation (M))|F} 4.0033;2.9619;2.8778;1.9732;1.8364;1.1845;0.8476;0.71913 -;-;-;-;-;-;-;- 530 NaN NaN 108369.5 NaN 15153 3653 18801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18810 77.854 NaN 647230 35 0 127560 0.327 + 1423 AYQLMVDVF 9 66 551.2679998628541 1100.5214467925082 2 551.2683715820312 MULTI HCD FTMS 0 0 0 18809 408565.59375 0.4260982865790094 -1 0.0262298583984375 1 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 99.79894945604345 0.0042691968066200965 1 {I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 6 3 79.245 0 0 7.2007 0 0 362.1603965501367 0 362.1603965501367 0 46.90350674422603 0 0 0 2.8494850021680094 0 1.110924374808178 0 + {I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 7.2007 + + 319 + NaN NaN 191088 NaN 15154 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18811 77.859 NaN 876310 35 0 93621 0.261 + 6482 FPIPGEPGF 9 56 480.74557682542917 959.4766007176584 2 480.7464599609375 MULTI HCD FTMS 0 0 0 18809 441581.90625 0.6004969754640834 14 -0.40369415283203125 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 53.57557251787612 0.02656881086235134 1 {[DA]|[EG]}{I|L}AE{I|L}DT 8 7 55.488 0 0 5.7831 0 0 0 128.0679118913404 128.0679118913404 6.3404817365531585 0 0 0 0 2.0356668758921828 1.3979400086720375 0.3807196863200844 0 {[DA]|[EG]}{I|L}AE{I|L}DT 5.7831 - 239 NaN NaN 209484.5 NaN 15155 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18812 77.862 NaN 356130 35 0 26561 0.261 + 22783 QYLDNLLVRF 10 64 640.8536199524714 1279.6926869717427 2 640.8536987304688 MULTI HCD FTMS 0 0 0 18809 192121.9375 0.43660216124355483 -1 0.0262298583984375 3 Unmodified _QYLDNLLVRF_ ENSG00000121879|ENST00000263967|PIK3CA 100.7086487251713 0.0001804935997887888 1 [YQ]{I|L}DN{I|L}{I|L}VR{M(Oxidation (M))|F} 10 0 + 79.293 0 0 6.1963 6.1963 87.587 0 0 0 26.184151806525392 15.324609153403514 15.324609153403514 9.164539485499262 0 2.087180496500464 1.3979400086720375 0 0.3807196863200844 + + [YQ]{I|L}DN{I|L}{I|L}VR{M(Oxidation (M))|F};[YQ]{I|L}DGG{I|L}{I|L}VR{M(Oxidation (M))|F};[YQ]{I|L}D[{I|L}V]QVR{M(Oxidation (M))|F};[YQ]{I|L}DN{I|L}{I|L}{M(Oxidation (M))|F}[RV];[YQ]{I|L}D[{I|L}V][AG]VR{M(Oxidation (M))|F};[YQ]{I|L}DGG{I|L}{I|L}{M(Oxidation (M))|F}[RV];[YQ]{I|L}D[{I|L}V]Q{M(Oxidation (M))|F}[RV];[YQ]{I|L}D[{I|L}V][AG]{M(Oxidation (M))|F}[RV] 6.1963;5.4801;4.9663;4.588;4.2501;3.8719;3.358;2.6419 +;-;-;-;-;-;-;- + 401 + NaN NaN 138312.6 NaN 15156 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18813 77.866 NaN 308310 35 0 23866 0.262 + 3290 EEFGQAFSF 9 63 531.2324875821478 1060.4504222310954 2 531.232666015625 MULTI HCD FTMS 0 0 0 18809 85904.7890625 0.0504336459159537 10 -0.29219818115234375 4 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 66.45667989310934 0.010234776021261575 1 S{I|L}{I|L}KA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 5 85.303 0 0 8.044 0 0 148.95257756418658 0 148.95257756418658 0 76.71933350288553 0 0 0 1.9247425010840047 0 1.079689690656103 0.28872548999643577 S{I|L}{I|L}KA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8.044 - 397 + NaN NaN 126516.5 NaN 15157 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18814 77.869 NaN 213490 35 0 76542 0.262 + 6036 FPDTPLAL 8 44 437.23933244578126 872.4641119583625 2 437.2392883300781 MULTI HCD FTMS 0 0 0 18809 106581.203125 0.5506735404282891 -6 0.18621826171875 5 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 19.438996006549623 0.45076845602799126 1 GA{I|L} 3 6 32.703 0 0 3.7484 0 0 613.3071123019157 0 613.3071123019157 0 32.70303756120384 0 0 0 1 0 0 0 GA{I|L} 3.7484 - 17 + NaN NaN 119452.4 NaN 15158 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18815 77.872 NaN 260270 35 0 16907 0.261 + 27970 TFDLTVVSY 9 61 522.7660881450597 1043.5176233569193 2 522.7662963867188 MULTI HCD FTMS 0 0 0 18809 74046.6875 1 0 0 6 Unmodified _TFDLTVVSY_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 68.08070601005525 0.009709267492204555 1 TVVSY 5 4 68.756 0 0 6.5888 0 0 476.22529799629064 0 476.22529799629064 0 55.65675328855981 0 0 0 2.3494850021680094 0 1.079689690656103 0 + TVVSY 6.5888 + + 144 NaN NaN 135714.1 NaN 15159 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18816 77.876 NaN 150170 35 0 14925 0.261 + 33551 YIKNELQTW 9 60 597.8106055854781 NaN 0 597.8109130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YIKNELQTW_ ENSG00000151320|ENST00000280979|AKAP6 20.453626601364224 0.18435338882370536 1 TT 2 8 22.691 0 0 1.901 0 0 787.4260121076187 201.06610582980616 988.4921179374248 0 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 TT 1.901 - 27 NaN NaN 117002.7 NaN 15160 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18817 77.879 NaN 176320 35 0 49560 0.264 + 31885 VYNFFHQYF 9 32 422.1989047704453 NaN 0 422.19940185546875 PEAK HCD FTMS 0 0 0 18809 70177.3046875 0.703546588889351 -1 0.0262298583984375 8 Unmodified _VYNFFHQYF_ L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|141|3|anti-sense 1.1933415558491238 0.28946407562688115 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 123454.2 NaN 15161 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18818 77.882 NaN 150050 35 0 11927 0.261 + -1 LCVCDCVCV 9 46 507.2017402988066 1012.3889276644132 2 507.2041320800781 MULTI HCD FTMS 0 0 0 18809 61290.1796875 0.6474566065490713 14 -0.40369415283203125 9 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VCDCVCV_ REV__ENST00000539526.5_1_11:117708658-117708883:-|nuORF 4.75600775471527 0.31496297302216103 1 S[{I|L}T] 3 -1 10.686 0 0 1.0556 0 0 693.2351779728918 0 693.2351779728918 0 9.717262228329561 0 0 0 0.5 0 0 0 S[{I|L}T] 1.0556 - 4 NaN NaN 103257.7 NaN 15162 3654 18809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18820 77.887 NaN 5093600 35 0 875420 0.327 + 13736 KYPSPFFVF 9 90 566.297318493246 1130.580084053292 2 566.2977905273438 MULTI HCD FTMS 0 0 0 18819 3708912.25 0.04321444109554055 29 -0.8292922973632812 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 134.295615338601 0.00034446139420701925 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 93.925 0 0 8.3076 8.3076 87.938 0 0 0 12.940680443502757 13.341671119825662 12.940680443502757 1.7609125905568135 0 2.8494850021680094 0 1.0044321917401078 0.9802046884880937 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.3076;8.1519;7.163;7.1276;7.0073;6.6695;6.5137;6.1843;6.0947;6.0878 +;-;-;+;-;-;-;-;-;- + 4107 NaN NaN 519189.5 NaN 15163 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18821 77.892 NaN 1156400 35 0 137950 0.261 + 32261 VYTVVDEMFL 10 94 616.3001103953502 1230.5856678575003 2 616.3003540039062 MULTI HCD FTMS 0 0 0 18819 456407 0.12550348253760904 7 -0.2034912109375 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 197.16714112316518 4.2288640611536333E-23 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 128.13 0 0 10.412 10.412 91.604 0 0 0 11.998351373633952 5.211440694835829 5.211440694835829 5.211440694835829 0 3.142159058960253 2 2.635151878060192 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]SVVDEYM{I|L};[Y{I|L}]SVVDEMY{I|L};{I|L}YYDDVVTM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YSVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YSVVDEYM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10.412;9.9884;9.5993;9.4698;9.4369;9.2202;9.1818;8.8389;8.8266;8.7967 -;-;-;-;-;+;-;-;-;- + 5598 NaN NaN 271676.5 NaN 15164 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18822 77.895 NaN 278510 35 0 42597 0.261 -1 LNRIADCQPF 10 68 638.3114108957272 1274.6082688582544 2 638.3111572265625 MULTI HCD FTMS 0 0 0 18819 213389.8125 0.2231865877701717 7 -0.2034912109375 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LNRIADC(Carbamidomethyl (C))QPF_ ENST00000357984.7_1_17:42264374-42266460:+|nuORF;ENST00000446571.7_2_17:42264374-42265283:+|nuORF;ENST00000538716.6_1_17:42264374-42266425:+|nuORF 18.1463463914782 0.3413772152514074 1 [YN]{I|L}[YV]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 9 -1 34.661 0 0 2.7194 0 0 0 159.03368520160817 159.03368520160817 1.7808932589411484 0 0 0 0 1.579689690656103 1.5228787452803376 0.3054621874040891 0 [YN]{I|L}[YV]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 2.7194 - 251 NaN NaN 141970.2 NaN 15165 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18823 77.898 NaN 436040 35 0 152140 0.261 -1 LYPQFMFHL 9 63 606.2992298592186 1210.583906785237 2 606.299560546875 MULTI HCD FTMS 0 0 0 18819 194197.484375 0.012131202110569157 131 -3.7612686157226562 4 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 13.50788311687929 0.24365122550260465 1 [Y{I|L}]QPM 5 -1 36.488 0 0 3.0141 0 0 0 575.2643526666624 575.2643526666624 31.00318646897557 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]QPM 3.0141 - 57 + NaN NaN 156729.4 NaN 15166 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18824 77.902 NaN 207350 35 0 23701 0.261 + 32228 VYTPTDTLVF 10 72 578.3007433699443 1154.5869338066884 2 578.301025390625 MULTI HCD FTMS 0 0 0 18819 72775.390625 0.19522927370455703 7 -0.2034912109375 5 Unmodified _VYTPTDTLVF_ ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF;nc|ENSG00000173120|Q9Y2K7-3|KDM2A 24.020572477871973 0.2864316864133941 1 WV{M(Oxidation (M))|F} 3 8 36.198 0 0 3.1351 0 0 704.3722401349625 0 704.3722401349625 0 24.64455650891217 0 0 0 1 0 0 0 WV{M(Oxidation (M))|F} 3.1351 - 44 NaN NaN 124127.9 NaN 15167 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18825 77.905 NaN 173470 35 0 16628 0.262 + 14113 LAAARSRSV 9 63 465.77750548458 929.54045803596 2 465.777587890625 MULTI HCD FTMS 0 0 0 18819 100785.125 0.36269444735588485 6 -0.1706390380859375 6 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 3.5964929083625545 0.32375295897743744 1 V 1 -1 3.4949 0 0 0.37598 0 0 603.3478748834194 224.09768091373283 827.4455557971522 0 0 0 0 0 0 0 0 0 V 0.37598 + + 13 + NaN NaN 111588.2 NaN 15168 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18826 77.908 NaN 257640 35 0 16658 0.261 + 26818 SYIEHIFEI 9 77 575.7926634449356 NaN 0 575.7926635742188 PEAK HCD FTMS 0 0 0 18819 66261.1015625 0.656918305292217 2 -0.05902099609375 7 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 19.256988751693697 0.19238547928067054 1 PQYS 4 9 21.759 0 0 1.8928 0 0 148.1199632898294 523.2205904596311 671.3405537494605 0 0 0 0 0 0 0 0.7614393726401688 0.2742275032520141 PQYS 1.8928 - 146 + NaN NaN 124906.4 NaN 15169 3655 18819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18828 77.913 NaN 1074500 35 0 228820 0.327 + 9156 HPIETLVDIF 10 87 592.3214097750489 1182.6282666168977 2 591.804443359375 MULTI HCD FTMS 0 0 0 18827 53966.91796875 0.3771304389318395 5 -0.14444732666015625 1 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 13.042465956692817 0.38911719078024076 1 {I|L}DV[RK]TTW 8 9 36.196 0 0 3.0606 0 0 165.07749864990393 0 165.07749864990393 0 -2.3978685854810777 -2.3978685854810777 0 0 0.7302046884880937 0 0.3054621874040891 0 {I|L}DV[RK]TTW 3.0606 - 816 + NaN NaN 245777.6 NaN 15170 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18829 77.918 NaN 948830 35 0 117240 0.261 + 32262 VYTVVDEMFL 10 90 616.3001103953502 1230.5856678575003 2 616.2987670898438 MULTI HCD FTMS 0 0 0 18827 344292.6875 0.09467412045275979 8 -0.23311614990234375 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 181.3275282027936 3.980396822113991E-16 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 123.55 0 0 10.04 10.04 90.486 0 0 0 7.9539639239977475 3.3226467981605623 3.3226467981605623 3.3226467981605623 0 3.305462187404089 2 2.4916440611282624 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{I|L}YSVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[Y{I|L}]SVVDEMY{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YSVVDEYM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{I|L}YYDDVVTM{I|L};[Y{I|L}]YDDVVTM{I|L} 10.04;9.7703;9.3939;9.2691;9.1235;9.056;8.96;8.786;8.7476;8.1428 -;-;-;-;-;+;-;-;-;- + 5898 NaN NaN 230548.7 NaN 15171 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18830 77.921 NaN 1151400 35 0 131940 0.261 + 12883 KYFPYLVVI 9 104 571.3363756473871 1140.658198361574 2 571.3364868164062 MULTI HCD FTMS 0 0 0 18827 314334.625 0.726585659055222 1 -0.03282928466796875 3 Unmodified _KYFPYLVVI_ ENSG00000171017|ENST00000306708|LRRC8E 42.09456458481378 0.05572955244001856 1 {I|L}D{I|L}VV{I|L} 6 5 42.855 0 0 3.757 0 0 470.22639662910314 0 470.22639662910314 0 15.407300390241687 0 0 0 1.25 0 0 0 {I|L}D{I|L}VV{I|L} 3.757 - 1810 NaN NaN 266275.9 NaN 15172 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18831 77.925 NaN 242500 35 0 46643 0.261 + 33276 YFLKGVLVF 9 59 543.3234229329513 1084.6322929327025 2 543.3235473632812 MULTI HCD FTMS 0 0 0 18827 158779.5 0.4226217677313038 3 -0.08522796630859375 4 Unmodified _YFLKGVLVF_ ENSG00000031698|ENST00000234677|SARS1 57.47134341890925 0.0211188941628804 1 {I|L}KR{I|L}V{M(Oxidation (M))|F} 6 4 49.686 0 0 4.5809 0 0 310.1322499005875 0 310.1322499005875 0 45.50434735867583 0 0 0 2.305462187404089 0 0 0 {I|L}KR{I|L}V{M(Oxidation (M))|F} 4.5809 - 85 NaN NaN 131798.2 NaN 15173 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18832 77.928 NaN 195190 35 0 14660 0.261 + 6772 FPQYFEATF 9 64 575.2663223532774 1148.5180917733546 2 575.2664794921875 MULTI HCD FTMS 0 0 0 18827 56993.63671875 0.5022613579094342 1 -0.03282928466796875 5 Unmodified _FPQYFEATF_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense 27.628801355627647 0.12213550946336599 1 {M(Oxidation (M))|F}PQYV[YE]G{M(Oxidation (M))|F} 9 -1 + 60.275 0 0 5.248 5.248 84.017 0 0 0 37.3158267586595 7.512962804388103 7.512962804388103 4.771212547196626 0 0.6139829889124311 0 0.7059771852360797 0.3252574989159953 {M(Oxidation (M))|F}PQYV[YE]G{M(Oxidation (M))|F};{M(Oxidation (M))|F}PQY{I|L}{[YD]|[{M(Oxidation (M))|F}M]}G{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[AG]YV[YE]G{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[AG]Y{I|L}{[YD]|[{M(Oxidation (M))|F}M]}G{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}Y{I|L}{[YD]|[{M(Oxidation (M))|F}M]}G{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[YE]G{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}G{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}M{I|L} 5.248;4.8326;4.1631;3.7477;2.5642;1.718;1.3025;1.1082;0.75723 -;-;-;-;-;-;-;-;- 207 + NaN NaN 125112.7 NaN 15174 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18833 77.931 NaN 160860 35 0 17510 0.262 + -1 PFICFLDA 8 48 491.7365688145515 981.458584695903 2 491.73858642578125 MULTI HCD FTMS 0 0 0 18827 59447.28515625 0.3351288417311541 16 -0.462158203125 6 Carbamidomethyl (C) _PFIC(Carbamidomethyl (C))FLDA_ REV__ENST00000515408.5_1_5:112312601-112321662:+|nuORF 28.173230860318316 0.38285857429842723 1 {[DA]|[EG]}{I|L}A{[QN]|[E{I|L}]|[KN]}D 7 -1 46.387 0 0 4.7263 0 0 0 251.10288416080314 251.10288416080314 10.523335240493026 0 0 0 0 0.8494850021680094 1.6989700043360187 0.7302046884880937 0 {[DA]|[EG]}{I|L}A{[QN]|[E{I|L}]|[KN]}D 4.7263 - 79 + NaN NaN 106774.6 NaN 15175 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18834 77.935 NaN 141260 35 0 14152 0.261 + 33283 YFLLSHLAF 9 45 555.8030329414652 1109.5915129497303 2 555.8027954101562 MULTI HCD FTMS 0 0 0 18827 47930.95703125 0.4842422204621056 1 -0.03282928466796875 7 Unmodified _YFLLSHLAF_ ENSG00000186509|ENST00000335397|OR9Q1 30.224811164608877 0.11021837014094292 1 A{M(Oxidation (M))|F} 2 7 30.217 0 0 2.7232 0 0 873.475564395368 0 873.475564395368 0 29.83792157123002 0 0 0 0.9247425010840047 0 0 0 + A{M(Oxidation (M))|F} 2.7232 + + 22 NaN NaN 101229.2 NaN 15176 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18835 77.938 NaN 138790 35 0 9635.9 0.261 + 7293 FTNDVIVLT 9 51 511.281615372158 1020.548677811116 2 511.2821044921875 MULTI HCD FTMS 0 0 0 18827 60492.43359375 0.6369148260879186 1 -0.03282928466796875 8 Unmodified _FTNDVIVLT_ REV__tr|U7T5Z8|U7T5Z8_FUSNUL-methioninegamma-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00144PE=3SV=1 16.149105407346934 0.22083165093524068 1 G{I|L}V[{I|L}T] 5 -1 32.703 0 0 3.2045 0 0 519.2392445294937 0 519.2392445294937 0 27.21848749616356 0 0 0 1.5 0 0 0 G{I|L}V[{I|L}T] 3.2045 - 66 NaN NaN 101060 NaN 15177 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18836 77.941 NaN 237340 35 0 16148 0.261 + 12677 KWHFILSM 8 67 531.2817691817075 1060.548985430215 2 531.2815551757812 MULTI HCD FTMS 0 0 0 18827 70463.2109375 0.8086922964569051 1 -0.03282928466796875 9 Unmodified _KWHFILSM_ REV__ENST00000469270.1_1_3:135820951-135825463:+|nuORF 19.256988751693697 0.45210759540527456 1 S{I|L}{I|L}KA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 -1 63.098 0 0 5.9496 0 0 149.0535805505089 0 149.0535805505089 0 48.405338034998735 0 0 0 1.3252574989159953 0 0.6505149978319906 0 S{I|L}{I|L}KA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.9496 - 233 + NaN NaN 121604.2 NaN 15178 3656 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18838 77.946 NaN 2066000 35 0 549350 0.327 + 20062 NYIPRFWTF 9 97 622.3163957915608 1242.6182386499215 2 622.3164672851562 MULTI HCD FTMS 0 0 0 18837 1181758 0.08604056208952177 9 -0.246002197265625 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 129.77232118876745 0.0006187813247758304 1 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 105.74 0 0 8.5096 8.5096 95.745 0 0 0 21.93066527840834 90.68040976044614 21.93066527840834 23.93553046518285 0 2.2302046884880937 1.6989700043360187 0.3252574989159953 1.4604093769761874 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]NPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]GGPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PR{M(Oxidation (M))|F}[PS][H{I|L}];[MT]VRR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[QP][YV]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PAAR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[WT]|[RM]}{[TV]|[{I|L}S]}R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[WT]|[RM]}{[TV]|[{I|L}S]}R{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F} 8.5096;6.5834;5.536;5.2937;4.9083;4.0409;3.9988;3.987;3.8992;3.1582 +;-;-;-;-;-;-;-;-;- + 2946 NaN NaN 394272.2 NaN 15179 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18839 77.951 NaN 1002100 35 0 119500 0.261 -1 YYMDYLAAL 9 75 569.7595024113915 1137.504451889583 2 569.7598876953125 MULTI HCD FTMS 0 0 0 18837 321329.875 0.5710205154211629 2 -0.052398681640625 2 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 21.74664581756881 0.17247014374749275 1 {I|L}AA{I|L} 4 -1 38.844 0 0 3.4149 0 0 751.253028676815 0 751.253028676815 0 21.85464087144375 0 0 0 1.2302046884880937 0 0 0 {I|L}AA{I|L} 3.4149 + + 70 NaN NaN 245125 NaN 15180 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18840 77.954 NaN 738660 35 0 66747 0.261 + 6254 FPFAVANQL 9 83 503.77175706718924 1005.5289612011785 2 503.771484375 MULTI HCD FTMS 0 0 0 18837 204561.34375 0.6314153990218697 2 -0.052398681640625 3 Unmodified _FPFAVANQL_ ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 97.07464715276575 0.004340583992084827 1 VANQ{I|L} 5 4 58.315 0 0 5.7995 0 0 462.2292903915815 0 462.2292903915815 0 42.830918867322296 0 0 0 1.6549471895720984 0 0 0.7302046884880937 + VANQ{I|L} 5.7995 + + 686 NaN NaN 201180.8 NaN 15181 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18841 77.958 NaN 569920 35 0 147760 0.261 + 28454 TPLPEEFEL 9 59 537.7715146792584 1073.5284764253167 2 537.7714233398438 MULTI HCD FTMS 0 0 0 18837 239031.40625 0.6771559221978543 -2 0.05902099609375 4 Unmodified _TPLPEEFEL_ ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540|SMG7;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant 46.020951573049366 0.037705236580089195 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L} 4 6 39.923 0 0 3.7188 0 0 519.2535267560562 0 519.2535267560562 0 31.963950151760656 0 0 0 0.8252574989159953 0 0.4247425010840047 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L} 3.7188 - 96 NaN NaN 163671.9 NaN 15182 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18842 77.961 NaN 495240 35 0 86757 0.261 -1 YLMTWAHEM 9 79 607.254372919939 1212.4941929066779 2 607.2546997070312 MULTI HCD FTMS 0 0 0 18837 176488.53125 0.17994006281106437 7 -0.200286865234375 5 2 Oxidation (M) _YLM(Oxidation (M))TWAHEM(Oxidation (M))_ ENST00000263997.10_1_16:68332069-68332321:-|nuORF 4.75600775471527 0.31496297302216103 1 [Y{I|L}]T[YV]W 6 -1 34.142 0 0 2.8158 0 0 0 384.0713060202723 384.0713060202723 8.90392315552809 0 0 0 0 1 1.6989700043360187 0.9247425010840047 0 [Y{I|L}]T[YV]W 2.8158 - 365 NaN NaN 156898.6 NaN 15183 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18843 77.964 NaN 635530 35 0 134560 0.261 + 33378 YGLEKFWAF 9 87 580.7923108403932 1159.5700687475862 2 580.7925415039062 MULTI HCD FTMS 0 0 0 18837 256728.171875 0.2692119153834594 -5 0.15765380859375 6 Unmodified _YGLEKFWAF_ ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 47.594388314883695 0.03493607795751234 1 [YG]{I|L}EK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F} 9 0 + 54.636 0 0 4.7118 4.7118 83.488 0 0 0 4.762036441594191 34.45432175029467 4.762036441594191 5.713337517843655 0 2.579689690656103 0 0 0 + + [YG]{I|L}EK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F};[Y{I|L}]GEK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SEK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F};[YG]{I|L}T[WQ]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[HV][VS]{M(Oxidation (M))|F}KEPA{M(Oxidation (M))|F};[Y{I|L}]GT[WQ]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]ST[WQ]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YG]{I|L}TR{M(Oxidation (M))|F}{[SA]|[TG]}V{M(Oxidation (M))|F};[YG]{I|L}TR{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YG]{I|L}T[VG]{M(Oxidation (M))|F}WA{M(Oxidation (M))|F} 4.7118;4.2191;4.1508;3.6091;3.5965;3.1164;3.0481;2.8644;2.7274;2.7077 +;-;-;-;-;-;-;-;-;- + 1142 NaN NaN 183203.8 NaN 15184 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18844 77.967 NaN 246570 35 0 35154 0.261 + 24242 RYFLPPYTF 9 49 602.3135793626778 NaN 0 602.3134765625 PEAK HCD FTMS 0 0 0 18837 80902.1015625 0.5928399060109355 -27 0.6483917236328125 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 34.40172386719151 0.09622929880997558 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 6 20.317 0 0 1.6894 0 0 165.0785917055103 463.20969568424067 628.288287389751 0 0 0 0 0 1.1989700043360187 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 1.6894 - 20 + NaN NaN 119849.8 NaN 15185 3657 18837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18846 77.972 NaN 2015300 35 0 204000 0.327 + 13428 KYPENFFLL 9 101 585.8132425088911 1169.6119320845821 2 585.8135986328125 MULTI HCD FTMS 0 0 0 18845 1694630.5 0.008547567623732212 91 -2.611297607421875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 74.19965305603844 0.007729275404663812 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 82.805 0 0 7.0797 7.0797 88.114 0 0 0 5.6424927368725974 45.51194254907825 5.6424927368725974 6.817496819840656 0 2.6307196863200843 0 0 1.4436726795685342 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.0797;6.4969;6.2925;5.7096;5.7096;5.6333;5.4522;5.3486;5.0504;4.846 +;-;-;-;-;-;-;-;-;- + 5148 NaN NaN 390865 NaN 15186 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18847 77.977 NaN 270940 35 0 10599 0.263 + 21142 PPLMIPVF 8 71 457.2642199679544 912.5138870027088 2 457.264404296875 MULTI HCD FTMS 0 0 0 18845 189251.796875 0.2631190266009246 65 -1.8602676391601562 2 Unmodified _PPLMIPVF_ ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-5|SOX5 2.8892196856762586 0.5377058178582064 1 QV 2 7 12.831 0 0 1.4061 0 0 414.24525404548064 268.1239107721313 682.3691648176119 0 0 0 0 0 0.7742275032520141 0 0 0 QV 1.4061 - 56 + NaN NaN 139362.4 NaN 15187 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18848 77.98 NaN 277560 35 0 54134 0.261 + 1728 CITSPFRWTF 10 77 629.3066532826065 1256.5987536320129 2 629.3065185546875 MULTI HCD FTMS 0 0 0 18845 93545.9921875 0.07951485123530083 10 -0.2856292724609375 3 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 24.990960013464015 0.27735500881591096 1 [YN]{I|L}RQC(Carbamidomethyl (C)){[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 9 -1 + 26.353 0 0 2.0972 2.0972 80.465 0 0 0 2.576778807609088 0.9876721558821089 0.9876721558821089 3.724089770347021 0 0.7302046884880937 0 0 0 [YN]{I|L}RQC(Carbamidomethyl (C)){[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YV]QRQC(Carbamidomethyl (C)){[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[C(Carbamidomethyl (C))M][YK]QR{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}RN{[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YN]{I|L}RQ[CG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YN]{I|L}R[AG]C(Carbamidomethyl (C)){[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YN]{I|L}R[C(Carbamidomethyl (C))K]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YV][AG]RQC(Carbamidomethyl (C)){[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YV]QR[AG]C(Carbamidomethyl (C)){[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YV]QRQ[CG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 2.0972;1.8008;1.7216;1.3644;1.3644;1.3644;1.0841;1.068;1.068;1.068 -;-;-;-;-;-;-;-;-;- 466 NaN NaN 125279.5 NaN 15188 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18849 77.984 NaN 288000 35 0 20704 0.261 + -1 YVARCDREDC 10 74 643.765598796343 1285.516644659486 2 643.7655029296875 MULTI HCD FTMS 0 0 0 18845 129086.859375 0.7747074249664904 2 -0.0591888427734375 4 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 9.38312468134398 0.42334543440173333 1 [YV]AS{M(Oxidation (M))|F}A{I|L} 7 -1 60.922 0 0 4.7391 0 0 0 531.1051271439927 531.1051271439927 27.545094889371526 0 0 0 0 2.1237125054200234 1.6989700043360187 0 0 [YV]AS{M(Oxidation (M))|F}A{I|L} 4.7391 - 277 + NaN NaN 121606.4 NaN 15189 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18850 77.987 NaN 216920 35 0 55115 0.264 -1 0 56 404.18801292452684 806.3614729158537 2 404.1879577636719 MULTI HCD FTMS 0 0 0 18845 98456.859375 0.2590613774158685 28 -0.7928924560546875 5 NaN NaN 1 Q 1 -1 4.6041 0 0 0.57097 0 0 172.15518737073495 503.1236971490844 675.2788845198194 0 0 0 0 0 0 0 0 0 Q 0.57097 - 8 + NaN NaN 116702.4 NaN 15190 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18851 77.99 NaN 146550 35 0 28938 0.261 + 19322 NNLMFPHVTVM 11 43 434.8822968659712 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 18845 69564.5625 0.6606921212574504 -57 1.4364166259765625 6 Unmodified _NNLMFPHVTVM_ REV__ENSG00000170965|ENST00000359237|PLAC1 2.6312355333042263 0.3346560860168035 1 P 1 -1 4.6041 0 0 0.53058 0 0 203.41308074144143 564.2586763971311 767.6717571385725 0 0 0 0 0 0 0 0 0 P 0.53058 + + 4 + NaN NaN 112749.7 NaN 15191 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18852 77.994 NaN 285250 35 0 25737 0.261 + 25171 SALEKFFYF 9 71 576.2933726953539 1150.5721924575078 2 576.292236328125 MULTI HCD FTMS 0 0 0 18845 87576.1015625 0.6064876853644485 -2 0.05898284912109375 7 Unmodified _SALEKFFYF_ ENSG00000108773|ENST00000225916|KAT2A;ENST00000586972.1_1_17:40265669-40266402:-|nuORF;nc|ENSG00000108773|Q92830-2|KAT2A 34.93206674587334 0.08860942999206235 1 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 6 34.693 0 0 3.0153 0 0 675.3593617169937 0 675.3593617169937 0 16.505149978319906 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3.0153 + + 92 NaN NaN 121026.9 NaN 15192 3658 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18854 77.999 NaN 684890 35 0 138500 0.327 + 1424 AYQLMVDVF 9 65 551.2679998628541 1100.5214467925082 2 551.2681884765625 MULTI HCD FTMS 0 0 0 18853 427426.5 0.4457685670906129 4 -0.10834503173828125 1 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 69.10491478415734 0.009377850133389008 1 {I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 6 3 75.438 0 0 6.8548 0 0 362.16044263795203 0 362.16044263795203 0 45.26084705832169 0 0 0 2.8494850021680094 0 0.7302046884880937 0 + {I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 6.8548 + + 268 + NaN NaN 186466.2 NaN 15193 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18855 78.003 NaN 893250 35 0 234250 0.261 + 14588 LFLPYSHFL 9 67 568.8104860589772 1135.6064191847543 2 568.8103637695312 MULTI HCD FTMS 0 0 0 18853 443095.21875 1 0 0 2 Unmodified _LFLPYSHFL_ ENSG00000115486|ENST00000233838|GGCX;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;REV__ENST00000300952.6_1_19:1257715-1257928:+|nuORF 67.34385681178166 0.00994769994983633 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PYSH{I|L}{M(Oxidation (M))|F} 9 2 + 76.865 0 0 6.7686 6.7686 93.086 0 0 0 66.43175948177209 16.478174818886373 16.478174818886373 27.289784572998173 0 2.1989700043360187 0 1.2302046884880937 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PYSH{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P[HS]Y{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[QP]{M(Oxidation (M))|F};[YN]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}{[QN]|[E{I|L}]|[KN]};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YP{I|L}{[QN]|[E{I|L}]|[KN]};[YN][KP]{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{M(Oxidation (M))|F} 6.7686;4.3655;2.6526;1.9674;1.832;1.0154 -;-;-;-;-;- 325 + NaN NaN 216965 NaN 15194 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18856 78.007 NaN 570530 35 0 55769 0.262 + 23561 RPDMLDTI 8 57 480.74557682542917 959.4766007176584 2 480.7474365234375 MULTI HCD FTMS 0 0 0 18853 351517.46875 0.47802043928779175 19 -0.5541000366210938 3 Unmodified _RPDMLDTI_ REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF;REV__nc|ENSG00000258628|A8MT19|RHPN2P1 34.40172386719151 0.3028461740636462 1 {[DA]|[EG]}{I|L}AE{I|L}DT 8 -1 59.964 0 0 6.2496 0 0 0 128.06716857872428 128.06716857872428 31.992691069731762 0 0 0 0 2.0356668758921828 1.3979400086720375 0.3054621874040891 0 {[DA]|[EG]}{I|L}AE{I|L}DT 6.2496 - 190 NaN NaN 167321.1 NaN 15195 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18857 78.01 NaN 217390 35 0 12708 0.261 + 22784 QYLDNLLVRF 10 66 640.8536199524714 1279.6926869717427 2 640.853515625 MULTI HCD FTMS 0 0 0 18853 127149.6484375 0.2889509237286902 4 -0.10834503173828125 4 Unmodified _QYLDNLLVRF_ ENSG00000121879|ENST00000263967|PIK3CA 40.23920728925047 0.14333095755487663 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}DD{I|L}{I|L}VR 9 4 38.726 0 0 3.0262 0 0 0 179.08215446389354 179.08215446389354 3.1478978590642797 0 0 0 0 0 1.6989700043360187 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}DD{I|L}{I|L}VR 3.0262 - 284 NaN NaN 111255.2 NaN 15196 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18858 78.013 NaN 247560 35 0 90182 0.264 -1 0 47 448.23037087530685 894.4461888174137 2 448.2305603027344 MULTI HCD FTMS 0 0 0 18853 108619.953125 1 0 0 5 NaN NaN 1 DPE 3 -1 30.445 0 0 3.4038 0 0 535.2983875959 0 535.2983875959 0 12.486512420283233 0 0 0 0.4247425010840047 0 0 0 DPE 3.4038 - 9 NaN NaN 115205.6 NaN 15197 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18859 78.017 NaN 253180 35 0 34088 0.261 + 28453 TPLMLASFCGG 11 59 548.7624127942623 1095.5102726553246 2 548.7476196289062 MULTI HCD FTMS 0 0 0 18853 72685.546875 0.8337616214697594 1 -0.0329437255859375 6 Unmodified _TPLMLASFCGG_ ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant 11.494710602746466 0.35692862141139436 1 TP{I|L}{[CP]|[EA]}[HN]V 8 7 26.916 0 0 2.457 0 0 0 231.08005701236564 231.08005701236564 6.73902187720806 0 0 0 0 0.9247425010840047 0 0.3054621874040891 0 TP{I|L}{[CP]|[EA]}[HN]V 2.457 - 202 + NaN NaN 117641.8 NaN 15198 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18860 78.02 NaN 132050 35 0 34483 0.261 + 34477 YPFESAEAQLL 11 34 634.3141962239849 1266.6138395147698 2 634.3138427734375 MULTI HCD FTMS 0 0 0 18853 52464.1171875 0.5850294674942829 1 -0.0329437255859375 7 Unmodified _YPFESAEAQLL_ ENSG00000167325|ENST00000300738|RRM1 10.150570793230772 0.3686401556411756 1 AQ{I|L}{I|L} 4 7 41.938 0 0 3.311 0 0 823.3395252912125 0 823.3395252912125 0 41.938200260161125 0 0 0 1 0 0 0 + AQ{I|L}{I|L} 3.311 + + 10 NaN NaN 122070 NaN 15199 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18861 78.023 NaN 154050 35 0 15480 0.262 + -1 EHMKDLASL 9 42 530.2615860976734 NaN 0 530.2734985351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _EHM(Oxidation (M))KDLASL_ REV__ENSG00000142609|ENST00000682832|CFAP74;REV__ENST00000378592.1_1_1:1916823-1922395:-|nuORF;REV__nc|ENSG00000142609|Q9C0B2-2|CFAP74;REV__nc|ENSG00000142609|Q9C0B2-3|CFAP74;REV__nc|ENSG00000142609|Q9C0B2|CFAP74 7.910154910731844 0.25691533546754686 1 TG{I|L}V 4 -1 14.412 0 0 1.3616 0 0 131.06908125583374 554.1964205377561 685.2655017935899 0 0 0 0 0 0 0 0 0 TG{I|L}V 1.3616 - 24 + NaN NaN 97884.4 NaN 15200 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18862 78.027 NaN 107310 35 0 7415.8 0.261 + 3586 EKIQKNKN 8 63 501.29058431079056 1000.5666156883811 2 501.2906188964844 MULTI HCD FTMS 0 0 0 18853 100692.421875 0.1770102258786189 -28 0.6934280395507812 9 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 4.3292370932331545 0.5355693454741696 1 V 1 8 8.4949 0 0 0.849 0 0 674.3719878581062 224.09702478580314 898.4690126439093 0 0 0 0 0 0.5 0 0 0 V 0.849 - 25 + NaN NaN 110103.8 NaN 15201 3659 18853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18864 78.032 NaN 3840600 35 0 642810 0.327 + 13737 KYPSPFFVF 9 93 566.297318493246 1130.580084053292 2 566.2976684570312 MULTI HCD FTMS 0 0 0 18863 2984547.75 0.03477449835573842 34 -0.9665145874023438 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 134.295615338601 0.00034446139420701925 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 92.275 0 0 8.1618 8.1618 93.123 0 0 0 11.661041859270256 11.661041859270256 11.661041859270256 11.661041859270256 0 2.8494850021680094 0 1.086696871556164 0.9090970050269639 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]SP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.1618;7.1303;7.0495;6.0118;5.8155;5.5365;5.1145;5.0879;4.5051;4.3791 +;+;-;-;-;-;-;-;-;- + 3866 NaN NaN 574806.1 NaN 15202 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18865 78.036 NaN 805690 35 0 75582 0.261 + 32263 VYTVVDEMFL 10 93 616.3001103953502 1230.5856678575003 2 615.8116455078125 MULTI HCD FTMS 0 0 0 18863 36614.140625 0.4307739566603683 15 -0.4325408935546875 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 88.95385435242217 0.0010827080174394257 1 [Y{I|L}]SVVD{M(Oxidation (M))|F}Q{I|L} 9 4 78.304 0 0 6.3631 0 0 0 163.03273501856248 163.03273501856248 41.49674684468791 0 0 0 0 2.004432191740108 1.5228787452803376 2.115356566548286 0.805462187404089 [Y{I|L}]SVVD{M(Oxidation (M))|F}Q{I|L} 6.3631 - 3235 NaN NaN 199825.2 NaN 15203 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18866 78.04 NaN 245580 35 0 94685 0.264 + 6037 FPDTPLAL 8 32 437.23933244578126 872.4641119583625 2 437.2393493652344 MULTI HCD FTMS 0 0 0 18863 193546.984375 1 0 0 3 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 26.34127834903884 0.3999841173197873 1 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3325029269157 0 670.3325029269157 0 30.969100130080562 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 19 + NaN NaN 112315.1 NaN 15204 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18867 78.043 NaN 320240 35 0 40667 0.261 + -1 TPLPSGFFAC 10 74 548.7624127942623 1095.5102726553246 2 548.762451171875 MULTI HCD FTMS 0 0 0 18863 82690.3203125 0.9485244110795416 2 -0.0591278076171875 4 Carbamidomethyl (C) _TPLPSGFFAC(Carbamidomethyl (C))_ REV__ENSG00000091129|ENST00000379028|NRCAM;REV__nc|ENSG00000091129|Q92823-2|NRCAM;REV__nc|ENSG00000091129|Q92823-3|NRCAM;REV__nc|ENSG00000091129|Q92823-4|NRCAM;REV__nc|ENSG00000091129|Q92823-5|NRCAM;REV__nc|ENSG00000091129|Q92823-6|NRCAM;REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant 22.736283301280096 0.29844449404982915 1 TP{I|L}P 4 -1 47.907 0 0 4.3731 0 0 0 684.2495821588499 684.2495821588499 34.77366308286463 0 0 0 0 0.8494850021680094 1.3979400086720375 0 0 TP{I|L}P 4.3731 + + 402 + NaN NaN 130107.4 NaN 15205 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18868 78.046 NaN 120040 35 0 11928 0.261 -1 MPMNVADLI 9 51 510.2485960484421 1018.4826391636842 2 510.2486267089844 MULTI HCD FTMS 0 0 0 18863 55988.8828125 0.16966408458373383 16 -0.46544647216796875 5 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 22.736283301280096 0.1639198954644489 1 GAD{I|L}{I|L} 5 -1 46.211 0 0 4.5373 0 0 531.2140370099625 0 531.2140370099625 0 30.638181262758266 0 0 0 1.3252574989159953 0 0 0 GAD{I|L}{I|L} 4.5373 - 56 NaN NaN 105902 NaN 15206 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18869 78.05 NaN 155810 35 0 17710 0.261 + 27971 TFDLTVVSY 9 54 522.7660881450597 1043.5176233569193 2 522.766357421875 MULTI HCD FTMS 0 0 0 18863 41371.125 0.5587167555604698 6 -0.1606597900390625 6 Unmodified _TFDLTVVSY_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 49.93300154707207 0.03166451819912738 1 TVVSY 5 4 60.477 0 0 5.7955 0 0 476.22545058418126 0 476.22545058418126 0 53.03009725027536 0 0 0 2.1989700043360187 0 0.805462187404089 0 + TVVSY 5.7955 + + 61 NaN NaN 113711.8 NaN 15207 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18870 78.053 NaN 127080 35 0 23269 0.261 + 32898 YAAVIEAVL 9 49 474.7737879526782 947.5330229721565 2 474.7738342285156 MULTI HCD FTMS 0 0 0 18863 37567.1640625 0.7473803553050851 1 -0.026275634765625 7 Unmodified _YAAVIEAVL_ ENSG00000088854|ENST00000252032|DNAAF9 10.823927491677226 0.26684000660059787 1 EAV{I|L} 4 5 32.607 0 0 3.4413 0 0 517.2896595685562 0 517.2896595685562 0 28.426003480513486 0 0 0 0.3054621874040891 0 0 0 + EAV{I|L} 3.4413 + + 20 NaN NaN 97236.7 NaN 15208 3660 18863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18872 78.058 NaN 663040 35 0 66334 0.327 -1 YTLVIICFL 9 78 571.3184414908901 1140.6223300485801 2 571.33642578125 MULTI HCD FTMS 0 0 0 18871 109210 0.505368433344408 -4 0.1116180419921875 1 Carbamidomethyl (C) _YTLVIIC(Carbamidomethyl (C))FL_ ENSG00000111261|ENST00000535902|MANSC1 21.74664581756881 0.17247014374749275 1 {I|L}KC(Carbamidomethyl (C))[VP]{I|L}{M(Oxidation (M))|F} 7 -1 25.718 0 0 2.2547 0 0 265.1637862026801 0 265.1637862026801 0 -0.47991791481905466 -0.47991791481905466 0 0 0.9247425010840047 0 0 0 {I|L}KC(Carbamidomethyl (C))[VP]{I|L}{M(Oxidation (M))|F} 2.2547 - 556 + NaN NaN 180312.7 NaN 15209 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18873 78.062 NaN 529000 35 0 104400 0.261 + 18706 MYPYIFHVL 9 78 591.8043054191721 1181.5940579051442 2 591.8046264648438 MULTI HCD FTMS 0 0 0 18871 179660.796875 0.23940598087548998 6 -0.16390228271484375 2 Unmodified _MYPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 56.04830969593885 0.023109620888794903 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 52.999 0 0 4.4853 4.4853 90.329 0 0 0 22.184334470932043 29.321355998091434 22.184334470932043 52.99857813546062 0 1.6677353201839438 2 0 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}PY{I|L}{M(Oxidation (M))|F}HV{I|L} 4.4853 + + 137 NaN NaN 161952.5 NaN 15210 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18874 78.066 NaN 778570 35 0 69877 0.261 + 33303 YFQNTQGLIF 10 95 615.811811916024 1229.609070898848 2 616.298583984375 MULTI HCD FTMS 0 0 0 18871 135667.921875 0.7024900652971527 1 -0.0328521728515625 3 Unmodified _YFQNTQGLIF_ ENSG00000004059|ENST00000000233|ARF5;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000168374|ENST00000303436|ARF4;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF 57.24910588100465 0.05142613675551719 1 [YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TQVA{I|L}{M(Oxidation (M))|F} 10 4 + 72.739 0 0 5.9156 5.9156 84.704 0 0 0 2.266128101111846 26.7252420034295 2.266128101111846 3.699429598139716 0 1.6989700043360187 1.3010299956639813 0.7059771852360797 0.805462187404089 [YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TQVA{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AYNTQVA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YNTQVA{I|L}{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[AG]VA{I|L}{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TQVA{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}AYNT[AG]VA{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AYGGTQVA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YNT[AG]VA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YGGTQVA{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AYNTQVA{M(Oxidation (M))|F}{I|L} 5.9156;5.6148;5.5696;5.1703;4.9939;4.8724;4.8724;4.8243;4.8243;4.6931 -;-;-;-;-;-;-;-;-;- 5674 NaN NaN 195302.7 NaN 15211 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18875 78.069 NaN 373110 35 0 146430 0.261 -1 LYPQFMFHL 9 64 606.2992298592186 1210.583906785237 2 606.2999267578125 MULTI HCD FTMS 0 0 0 18871 125769.6015625 0.00785662317321376 137 -3.9421844482421875 4 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 18.13498045792455 0.20367413111508956 1 N 1 -1 7.4743 0 0 0.61741 0 0 934.436487372626 159.0875643365844 1093.5240517092104 0 0 0 0 0 0.5 0 0 0 N 0.61741 - 21 + NaN NaN 140966.6 NaN 15212 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18876 78.072 NaN 312030 35 0 23136 0.261 + 35602 YYIFIPSKF 9 75 589.3188011551375 NaN 0 589.318359375 PEAK HCD FTMS 0 0 0 18871 81406.859375 0.3309792688462219 27 -0.7730636596679688 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 {I|L} 1 8 13.979 0 0 1.1881 0 0 326.1274106131007 734.3877295119737 1060.5151401250744 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.1881 + + 28 + NaN NaN 134568 NaN 15213 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18877 78.076 NaN 172830 35 0 15262 0.263 + 14114 LAAARSRSV 9 64 465.77750548458 929.54045803596 2 465.77728271484375 MULTI HCD FTMS 0 0 0 18871 88358.5390625 0.31797501361879343 12 -0.35720062255859375 6 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 3.5964929083625545 0.32375295897743744 1 Q 1 -1 4.6041 0 0 0.49531 0 0 431.27084851623187 367.19733606510005 798.4681845813319 0 0 0 0 0 0 0 0 0 Q 0.49531 - 24 + NaN NaN 123406.4 NaN 15214 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18878 78.079 NaN 405990 35 0 50534 0.261 + 4764 EYTSILHLF 9 78 561.7949109736411 1121.575269014082 2 561.7948608398438 MULTI HCD FTMS 0 0 0 18871 104965.9609375 0.5583355191943531 -4 0.1116180419921875 7 Unmodified _EYTSILHLF_ ENSG00000198799|ENST00000361127|LRIG2 101.72198241140316 0.004218805956062179 1 [YE]TS{I|L}{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 81.788 0 0 7.2923 7.2923 94.923 0 0 0 35.465978039238735 14.973024840566467 14.973024840566467 44.57956914599634 0 1.416386562212267 1.3010299956639813 0 0 + + [YE]TS{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};[YE]{I|L}{I|L}{[MG]|[TS]}H{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[QV]|[N{I|L}]|[RA]|[KV]}NH{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[QV]|[N{I|L}]|[RA]|[KV]}GGH{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}[PG]{[QV]|[N{I|L}]|[RA]|[KV]}VT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[PG]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}VT{M(Oxidation (M))|F};[WP]HH{I|L}[KG]T{M(Oxidation (M))|F} 7.2923;3.3176;2.2593;1.4383;0.95764;0.64363;0.11299 +;-;-;-;-;-;- + 962 + NaN NaN 135451.1 NaN 15215 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18879 78.082 NaN 118270 35 0 19432 0.261 + -1 NYLKGHPMTAQ 11 47 638.3114108957272 1274.6082688582544 2 638.3108520507812 MULTI HCD FTMS 0 0 0 18871 72265.0234375 0.07558272725014512 13 -0.37670135498046875 8 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 7.101721422024254 0.3877749288398915 1 T{M(Oxidation (M))|F} 2 -1 21.454 0 0 1.6832 0 0 1008.4785023419937 0 1008.4785023419937 0 0.2557626122369072 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 1.6832 - 23 NaN NaN 104857.9 NaN 15216 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18880 78.086 NaN 174450 35 0 52529 0.264 + -1 SSSMLGVF 8 34 422.1989047704453 NaN 0 422.1987609863281 PEAK HCD FTMS 0 0 0 18871 41950.15625 0.42056173950379444 6 -0.16390228271484375 9 Oxidation (M) _SSSM(Oxidation (M))LGVF_ REV__ENSG00000112394|ENST00000368851|SLC16A10;REV__ENST00000465319.1_1_6:111493917-111494692:+|nuORF;REV__SLC16A10|p.I205Cfs*15|1|0.08|ENSG00000112394|chr6:111177336-111177355|ATTGTCACTGCTGGCAGCAG/-|frameshift_variant 2.8892196856762586 0.38822285293237185 1 K 1 -1 1.7827 0 0 0.21163 0 0 445.10195885554066 266.15448938541255 711.2564482409532 0 0 0 0 0 0 0 0 0 K 0.21163 - 2 + NaN NaN 99607.2 NaN 15217 3661 18871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18882 78.091 NaN 1312100 35 0 350550 0.327 + 20063 NYIPRFWTF 9 79 622.3163957915608 1242.6182386499215 2 622.3165893554688 MULTI HCD FTMS 0 0 0 18881 704576.25 0.05129826629896088 14 -0.40631866455078125 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 99.75527289724121 0.004270341300239591 1 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 91.749 0 0 7.3835 7.3835 93.948 0 0 0 23.93553046518285 16.478174818886373 16.478174818886373 23.93553046518285 0 2.1237125054200234 1.6989700043360187 0.4247425010840047 1.3411290632962718 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]NPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]GGPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}[RV][NS][KC];[Y{I|L}]SS[RV]{M(Oxidation (M))|F}WW 7.3835;5.4573;4.4099;2.9349;1.9817 +;-;-;-;- + 366 NaN NaN 286272.2 NaN 15218 3662 18881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18883 78.095 NaN 132690 35 0 19147 0.261 + -1 SHYHSKLLMSG 11 53 638.3114108957272 1274.6082688582544 2 638.8135375976562 MULTI HCD FTMS 0 0 0 18881 44234.45703125 0.05923846902635239 14 -0.40631866455078125 2 Oxidation (M) _SHYHSKLLM(Oxidation (M))SG_ REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense 6.630372943996041 0.3898421031449734 1 T{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6451 0 0 1008.485903174931 0 1008.485903174931 0 -2.4472749489669354 -2.4472749489669354 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.6451 - 29 NaN NaN 95873 NaN 15219 3662 18881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18884 78.099 NaN 132880 35 0 15923 0.261 + 35806 YYPEYKLLF 9 59 618.3210232219569 NaN 0 618.32080078125 PEAK HCD FTMS 0 0 0 18881 25088.58203125 0.7606614617420036 1 -0.01627349853515625 3 Unmodified _YYPEYKLLF_ ENSG00000159720|ENST00000290949|ATP6V0D1 10.823927491677226 0.2427956001690155 1 TWVN 4 9 9.5526 0 0 0.77372 0 0 165.19824653981374 566.1673678033811 731.3656143431949 0 0 0 0 0 0 0 0 0 TWVN 0.77372 - 38 + NaN NaN 98684.6 NaN 15220 3662 18881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18885 78.102 NaN 88257 35 0 19371 0.264 + 20539 PDYLGGHF 8 42 453.2097064672482 NaN 0 453.20977783203125 PEAK HCD FTMS 0 0 0 18881 16137.919921875 0.5535347584508424 -4 0.118316650390625 4 Unmodified _PDYLGGHF_ REV__chr5:167755192-167875986|342|11.18|0.1|6.82|+|ENST00000519204|TENM2,TENM2;REV__ENSG00000145934|ENST00000518659|TENM2;REV__ENSG00000218336|ENST00000511685|TENM3;REV__nc|ENSG00000145934|Q9NT68-2|TENM2 2.8892196856762586 0.38822285293237185 1 P 1 -1 6.9897 0 0 0.77285 0 0 148.02302880679855 656.2986544244749 804.3216832312735 0 0 0 0 0 0 0 0 0 P 0.77285 + + 5 + NaN NaN 100882.4 NaN 15221 3662 18881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18887 78.107 NaN 1822300 35 0 202070 0.327 + 13429 KYPENFFLL 9 103 585.8132425088911 1169.6119320845821 2 585.8134155273438 MULTI HCD FTMS 0 0 0 18886 1348081.125 0.0067996029684432675 96 -2.7521286010742188 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 91.727 0 0 7.8425 7.8425 89.786 0 0 0 7.870156338638594 16.478174818886373 7.870156338638594 7.870156338638594 0 2.6307196863200843 0 0.3054621874040891 2.030369551124698 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.8425;7.1696;7.0552;6.4869;6.3823;6.1355;6.0287;5.814;5.6996;5.0267 +;-;-;-;-;-;-;-;-;- + 2734 NaN NaN 358132.3 NaN 15222 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18888 78.111 NaN 1575300 35 0 504430 0.261 + 33379 YGLEKFWAF 9 77 580.7923108403932 1159.5700687475862 2 580.7926635742188 MULTI HCD FTMS 0 0 0 18886 924593.75 0.9695533317250027 1 -0.03954315185546875 2 Unmodified _YGLEKFWAF_ ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 55.50274090549119 0.023872834264864425 1 [{M(Oxidation (M))|F}V]SEK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F} 9 3 + 61.543 0 0 5.3074 5.3074 82.224 0 0 0 0.7268250975604218 8.310384486277798 0.7268250975604218 0.7268250975604218 0 2.16944517631652 0 0.3807196863200844 0 [{M(Oxidation (M))|F}V]SEK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F};[YG]{I|L}EK{M(Oxidation (M))|F}WA{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]AK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]ST[WQ]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YG]{I|L}T[WQ]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}K{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[HV][VS]{M(Oxidation (M))|F}KEPA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}PA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STR{M(Oxidation (M))|F}{[SA]|[TG]}V{M(Oxidation (M))|F};[YG]{I|L}TR{M(Oxidation (M))|F}{[SA]|[TG]}V{M(Oxidation (M))|F} 5.3074;5.2447;4.5826;4.5432;4.4805;4.0437;3.7047;3.6812;3.5821;3.5195 -;+;-;-;-;-;-;-;-;- + 815 NaN NaN 320658.1 NaN 15223 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18889 78.115 NaN 914460 35 0 92064 0.261 + 9978 IEHPYGICVL 10 93 572.2953315339288 1142.5761101346575 2 572.307861328125 MULTI HCD FTMS 0 0 0 18886 37412.55859375 1 0 0 3 Unmodified _IEHPYGICVL_ REV__ENSG00000144130|ENST00000688554|NT5DC4;REV__nc|ENSG00000144130|Q86YG4|NT5DC4 21.74664581756881 0.3077012291670537 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 8 -1 46.24 0 0 4.047 0 0 0 130.0138997258895 130.0138997258895 -1.675427441500105 0 -1.675427441500105 0 0 0.4247425010840047 1.6989700043360187 0.3054621874040891 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 4.047 - 2765 NaN NaN 219109.2 NaN 15224 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18890 78.118 NaN 591480 35 0 92147 0.261 + 28455 TPLPEEFEL 9 70 537.7715146792584 1073.5284764253167 2 537.7716674804688 MULTI HCD FTMS 0 0 0 18886 202949.859375 0.5749399266859015 4 -0.114776611328125 4 Unmodified _TPLPEEFEL_ ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540|SMG7;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}E{I|L} 3 6 29.495 0 0 2.7475 0 0 666.3229990086795 0 666.3229990086795 0 14.010234424404686 0 0 0 0.3252574989159953 0 0.3054621874040891 0 + {M(Oxidation (M))|F}E{I|L} 2.7475 + + 81 NaN NaN 171461 NaN 15225 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18891 78.122 NaN 190360 35 0 6901.1 0.261 + 12397 KPGKGARAE 9 67 457.2642199679544 912.5138870027088 2 457.2643127441406 MULTI HCD FTMS 0 0 0 18886 174820.140625 0.24305452308000317 70 -2.0166015625 5 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 W 1 9 13.495 0 0 1.4789 0 0 708.4241480884494 0 708.4241480884494 0 0.8361343778773289 0 0 0 0 0 0 0 W 1.4789 - 71 + NaN NaN 112274.2 NaN 15226 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18892 78.125 NaN 478780 35 0 41905 0.261 + 21511 PYIATTTMGF 10 89 551.2679998628541 1100.5214467925082 2 552.2577514648438 MULTI HCD FTMS 0 0 0 18886 13372.046875 0.06115231983895667 8 -0.24236297607421875 6 Unmodified _PYIATTTMGF_ REV__ENSG00000121318|ENST00000240619|TAS2R10 21.74664581756881 0.3077012291670537 1 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 -1 47.815 0 0 4.3447 0 0 0 126.09229147174973 126.09229147174973 8.720181374050995 0 0 0 0 0 1.6989700043360187 0.5866968715561641 0.3054621874040891 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4.3447 - 626 NaN NaN 164814.6 NaN 15227 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18893 78.128 NaN 478140 35 0 36787 0.261 + 227 AFDLIEHYF 9 74 577.7794604697037 1153.5443680062074 2 577.7796630859375 MULTI HCD FTMS 0 0 0 18886 142593.015625 0.43097974488663465 -3 0.07540130615234375 7 Unmodified _AFDLIEHYF_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant 68.08070601005525 0.009709267492204555 1 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F} 9 0 + 75.143 0 0 6.5141 6.5141 85.441 0 0 0 3.0943116412207416 15.34699626003583 3.0943116412207416 3.0943116412207416 0 2.6549471895720984 0 0 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F};{M(Oxidation (M))|F}AD{I|L}{I|L}EHY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}A{I|L}{I|L}EHY{M(Oxidation (M))|F};{M(Oxidation (M))|F}AD{I|L}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}G{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}E[W{M(Oxidation (M))|F}]N;{M(Oxidation (M))|F}W{I|L}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}G{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}A{I|L}{I|L}E[W{M(Oxidation (M))|F}]N;{M(Oxidation (M))|F}W{I|L}EE{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F};{M(Oxidation (M))|F}WEE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y[PS][KP]WE 6.5141;6.2459;5.667;4.525;3.8454;3.5905;2.9983;2.2066;0.83764;0.23617 +;-;-;-;-;-;-;-;-;- + 344 NaN NaN 172459.7 NaN 15228 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18894 78.132 NaN 308650 35 0 42426 0.261 + 21527 PYLDKFFAL 9 73 557.3026924456688 1112.5908319581374 2 557.3028564453125 MULTI HCD FTMS 0 0 0 18886 124763.90625 0.751803930599962 -2 0.04912567138671875 8 Unmodified _PYLDKFFAL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 67.83816525789305 0.009787749748478139 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L} 9 0 + 82.305 0 0 7.3976 7.3976 93.912 0 0 0 16.075090722850263 58.88403068198379 16.075090722850263 23.48258770979733 0 1.9247425010840047 2 0.3494850021680094 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DKE[HV]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AKD{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}KD{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 7.3976;5.287;1.4298;1.3175 +;-;-;- + 319 NaN NaN 127245.9 NaN 15229 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18895 78.135 NaN 167630 35 0 29195 0.261 + -1 GSMILMCNLLF 11 58 629.3066532826065 1256.5987536320129 2 629.3062133789062 MULTI HCD FTMS 0 0 0 18886 62631.7734375 0.05323751484193834 15 -0.4457550048828125 9 Oxidation (M) _GSM(Oxidation (M))ILMCNLLF_ REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF 7.101721422024254 0.3877749288398915 1 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0666 0 0 990.4755967798548 0 990.4755967798548 0 6.264100213633764 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.0666 - 38 NaN NaN 107744.1 NaN 15230 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18896 78.138 NaN 170760 35 0 24588 0.264 + 16226 LPWCLDLT 8 40 480.74557682542917 959.4766007176584 2 480.74615478515625 MULTI HCD FTMS 0 0 0 18886 79780.125 0.10849113853302614 23 -0.6583023071289062 10 Unmodified _LPWCLDLT_ ENST00000470940.5_1_2:231314159-231314255:+|nuORF 24.67388899826682 0.4122521268485776 1 D[RH]MG{I|L} 6 7 30.679 0 0 3.1975 0 0 232.1418171613297 0 232.1418171613297 0 8.68948444925195 0 0 0 1.305462187404089 0 0 0 D[RH]MG{I|L} 3.1975 - 51 NaN NaN 113965.9 NaN 15231 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18897 78.142 NaN 237270 35 0 21667 0.261 + -1 INVCRLTW 8 62 531.2817691817075 1060.548985430215 2 531.78466796875 MULTI HCD FTMS 0 0 0 18886 75655.0390625 0.93687069922883 4 -0.114776611328125 11 Carbamidomethyl (C) _INVC(Carbamidomethyl (C))RLTW_ REV__ENSG00000018699|ENST00000317907|TTC27 8.593279151180031 0.5292430274356741 1 {M(Oxidation (M))|F}V[DV]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 -1 27.344 0 0 2.5783 0 0 130.09212297047628 0 130.09212297047628 0 14.552593986562812 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V[DV]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.5783 - 116 + NaN NaN 115683.9 NaN 15232 3663 18886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18899 78.147 NaN 181940 35 0 45074 0.327 -1 0 49 404.18801292452684 806.3614729158537 2 404.1881103515625 MULTI HCD FTMS 0 0 0 18898 86336.53125 0.22717016212902305 34 -0.9698410034179688 1 NaN NaN 1 S 1 -1 9.2917 0 0 1.1523 0 0 68.04373717542246 648.2453120596626 716.2890492350851 0 0 0 0 0 0.3807196863200844 0 0 0 S 1.1523 - 6 + NaN NaN 108130 NaN 15233 3664 18898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18900 78.151 NaN 107220 35 0 5580.6 0.261 + 22057 QGQKRLLD 8 55 479.2774935703601 956.5404342075202 2 479.277099609375 MULTI HCD FTMS 0 0 0 18898 95505.3828125 0.08946082779152399 -20 0.5756301879882812 2 Unmodified _QGQKRLLD_ REV__ENSG00000204406|ENST00000642680|MBD5;REV__nc|ENSG00000204406|Q9P267-2|MBD5;REV__nc|ENSG00000204406|Q9P267|MBD5 2.302733041254933 0.5385759549224092 1 M 1 -1 6.1092 0 0 0.63868 0 0 543.3268244436515 279.14533411197505 822.4721585556265 0 0 0 0 0 0.5 0 0 0 M 0.63868 - 12 + NaN NaN 106768.9 NaN 15234 3664 18898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18901 78.154 NaN 294290 35 0 23199 0.261 -1 VYFCCFFKD 9 67 643.2733099756268 1284.5320670180536 2 643.7642211914062 MULTI HCD FTMS 0 0 0 18898 18184.62109375 0.5969879396013141 -2 0.055816650390625 3 2 Carbamidomethyl (C) _VYFC(Carbamidomethyl (C))C(Carbamidomethyl (C))FFKD_ ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 5.230669730166228 0.3113646817964458 1 [YV]AS{M(Oxidation (M))|F}{I|L}A 7 -1 33.364 0 0 2.5974 0 0 0 530.1161943211616 530.1161943211616 12.72910812891027 0 0 0 0 0 2 0.7614393726401688 0 [YV]AS{M(Oxidation (M))|F}{I|L}A 2.5974 - 294 NaN NaN 142078 NaN 15235 3664 18898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18902 78.158 NaN 121990 35 0 13433 0.261 + 32395 VYWTQLNMF 9 50 609.2870677921959 1216.5595826511917 2 609.2867431640625 MULTI HCD FTMS 0 0 0 18898 60668.0625 0.5378205223212313 5 -0.143707275390625 4 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 47.594388314883695 0.03493607795751234 1 [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 62.617 0 0 5.1471 5.1471 86.493 0 0 0 4.137342758552691 47.13283468773298 4.137342758552691 9.208187539523749 0 2.305462187404089 0 0 0 + + [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{[RE]|[WV]}Q{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{[RE]|[WV]}[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{[RE]|[WV]}Q{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QTWP{M(Oxidation (M))|F};[YV][YN]QT[WP]{M(Oxidation (M))|F} 5.1471;4.3902;4.3902;3.999;3.6369;3.2421;3.2421;2.822;2.3748 +;-;-;-;-;-;-;-;- + 289 NaN NaN 98248 NaN 15236 3664 18898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18904 78.163 NaN 3182300 35 0 524870 0.327 + 13738 KYPSPFFVF 9 104 566.297318493246 1130.580084053292 2 566.297607421875 MULTI HCD FTMS 0 0 0 18903 2224970 0.025924267958710764 39 -1.1318817138671875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 134.295615338601 0.00034446139420701925 1 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 93.189 0 0 8.2426 8.2426 93.762 0 0 0 13.322646798160562 16.478174818886373 13.322646798160562 13.322646798160562 0 2.774227503252014 0 0.9947026752325154 0.9916440611282626 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]SP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.2426;7.0642;6.0511;6.0196;5.9998;5.8234;5.6026;5.1035;5.0957;4.5265 +;-;-;-;-;-;-;-;-;- + 4113 NaN NaN 565974 NaN 15237 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18905 78.167 NaN 314470 35 0 53438 0.261 -1 TPQFPDMIL 9 49 539.2679517160655 1076.5213504989308 2 539.2679443359375 MULTI HCD FTMS 0 0 0 18903 168688.3125 0.009024122154743765 89 -2.551971435546875 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 20.41453444215458 0.18397929046831515 1 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3421971795568 0 832.3421971795568 0 8.310384486277798 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 13 NaN NaN 125959 NaN 15238 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18906 78.171 NaN 284440 35 0 29717 0.261 + 19767 NYAWVYYHL 9 63 614.7929789950731 1227.571405056946 2 614.7928466796875 MULTI HCD FTMS 0 0 0 18903 119783.0546875 0.4492930393213984 41 -1.1944580078125 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 1 [YN]AWVYYH{I|L} 9 0 + 97.106 0 0 7.9104 7.9104 96.25 0 0 0 11.893878342760047 11.893878342760047 11.893878342760047 54.13934099835714 0 2.5 1.6989700043360187 0 1.0044321917401078 + + [YN]AWVYYH{I|L};[WY]{[QG]|[NA]}VYYH{I|L};[YN][YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YH{I|L} 7.9104;3.5001;3.1 +;-;- + 371 NaN NaN 119810.9 NaN 15239 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18907 78.174 NaN 200110 35 0 35425 0.261 -1 LKSPCCFEI 9 55 548.7624127942623 1095.5102726553246 2 548.7470703125 MULTI HCD FTMS 0 0 0 18903 18146.4765625 0.20815466586132067 7 -0.2128143310546875 4 Carbamidomethyl (C) _LKSPC(Carbamidomethyl (C))CFEI_ ENST00000368985.7_1_1:150737235-150738261:-|nuORF 7.289230182591677 0.29575926068275815 1 E{M(Oxidation (M))|F} 2 -1 10.969 0 0 1.0013 0 0 131.12611530215742 685.2485370088907 816.3746523110481 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.0013 - 73 + NaN NaN 115510.8 NaN 15240 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18908 78.177 NaN 111040 35 0 5706.9 0.261 + 26371 SSRKRLVE 8 56 487.79078151675463 973.5670101003093 2 487.7908935546875 MULTI HCD FTMS 0 0 0 18903 89995.5 0.14499691815793553 -19 0.5368881225585938 5 Unmodified _SSRKRLVE_ REV__ENSG00000156234|ENST00000682537|CXCL13 2.0597508629832335 0.5389364538378849 1 V 1 -1 2.7642 0 0 0.28393 0 0 559.3203497993312 312.1500643365844 871.4704141359157 0 0 0 0 0 0 0 0 0 V 0.28393 + + 4 + NaN NaN 101923 NaN 15241 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18909 78.181 NaN 133850 35 0 45836 0.261 + 7312 FTSESWLL 8 36 491.7476421370131 981.4807313408262 2 491.7480773925781 MULTI HCD FTMS 0 0 0 18903 71800.96875 0.5356212088310568 -2 0.0557708740234375 6 Unmodified _FTSESWLL_ REV__ENST00000398637.9_1_12:46581846-46582023:-|nuORF 9.347437153973935 0.5250182646323369 1 {I|L}{I|L} 2 -1 25.217 0 0 2.5692 0 0 737.3037148035509 0 737.3037148035509 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.5692 + + 3 NaN NaN 97904.9 NaN 15242 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18910 78.184 NaN 66367 35 0 6108.2 0.261 + 12046 KIKGSMRSKY 10 48 599.3429561795662 NaN 0 599.2785034179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KIKGSMRSKY_ tr|U7SSZ4|U7SSZ4_FUSNUPhosphoesteraseRecJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01426PE=4SV=1 2.9952420565917617 0.3376207769591857 1 E 1 10 5.4846 0 0 0.45832 0 0 237.23741800891474 827.3481539361936 1064.5855719451083 0 0 0 0 0 0 0 0 0 E 0.45832 - 2 + NaN NaN 90643.4 NaN 15243 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18911 78.187 NaN 58937 35 0 5328.8 0.263 + 2207 DINHYTKV 8 33 495.25671735115174 NaN 0 495.2203369140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _DINHYTKV_ ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000495039.1_1_7:92888888-92902105:+|nuORF;nc|ENSG00000004766|Q96JG6-2|VPS50;nc|ENSG00000004766|Q96JG6-3|VPS50 1.844237919475145 0.38822285293237185 1 E 1 8 2.4743 0 0 0.2503 0 0 559.3257993489848 297.11033044986567 856.4361297988505 0 0 0 0 0 0 0 0 0 E 0.2503 - 2 + NaN NaN 82612.5 NaN 15244 3665 18903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18913 78.192 NaN 1083500 35 0 318000 0.327 + 15946 LPPKPLNIF 9 62 519.8211470376159 1037.6277411420317 2 521.3265380859375 MULTI HCD FTMS 0 0 0 18912 407195.3125 0.5676468253729691 -2 0.04571533203125 1 Unmodified _LPPKPLNIF_ ENSG00000135185|ENST00000257637|TMEM243;ENST00000465976.1_1_7:86827133-86832342:-|nuORF;ENST00000481425.5_1_7:86825954-86846082:-|nuORF 9.347437153973935 0.2795965555214564 1 [{I|L}P][RV]S{I|L}P{I|L} 8 5 44.43 0 0 4.2819 0 0 0 159.04541902880126 159.04541902880126 18.51219677964764 0 0 0 0 0 1.6989700043360187 0.805462187404089 0 [{I|L}P][RV]S{I|L}P{I|L} 4.2819 - 77 NaN NaN 244528 NaN 15245 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18914 78.197 NaN 430990 35 0 26743 0.261 + -1 YNYPTAKNIM 10 80 615.7962429029718 NaN 0 615.8115844726562 PEAK HCD FTMS 0 0 0 18912 26737.5 0.4223729562830291 -5 0.1343841552734375 2 Oxidation (M) _YNYPTAKNIM(Oxidation (M))_ REV__ENSG00000170906|ENST00000485876|NDUFA3 18.1463463914782 0.29565035219289926 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}EDVVD 7 -1 21.781 0 0 1.7714 0 0 130.08777281590602 245.12958704166252 375.21735985756857 0 0 0 0 0 0 0 1.305462187404089 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}EDVVD 1.7714 - 1120 + NaN NaN 145476.4 NaN 15246 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18915 78.2 NaN 190810 35 0 26772 0.261 + -1 GSMILMCNLLF 11 58 629.3066532826065 1256.5987536320129 2 629.8081665039062 MULTI HCD FTMS 0 0 0 18912 62812.05078125 0.07122891325588769 18 -0.5242691040039062 3 Oxidation (M) _GSM(Oxidation (M))ILMCNLLF_ REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF 15.248480904072842 0.3242218977034194 1 T{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.0067 0 0 990.47372202097 0 990.47372202097 0 4.758950235313861 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 2.0067 - 85 NaN NaN 112750.6 NaN 15247 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18916 78.203 NaN 98915 35 0 17313 0.263 + 18038 MLRFMALF 8 39 514.7740877174659 1027.5336225017318 2 514.7742919921875 MULTI HCD FTMS 0 0 0 18912 31171.6015625 0.639786113937927 -2 0.04571533203125 4 Unmodified _MLRFMALF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 13.50788311687929 0.4944073034352369 1 KA{I|L}{M(Oxidation (M))|F} 4 -1 40.165 0 0 3.9089 0 0 550.2387335778662 0 550.2387335778662 0 23.711375162600703 0 0 0 1.4247425010840047 0 0 0 KA{I|L}{M(Oxidation (M))|F} 3.9089 - 22 NaN NaN 106769.7 NaN 15248 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18917 78.207 NaN 163560 35 0 21156 0.261 + -1 TLYMEEGETF 10 49 618.2611086191719 1234.5076643051436 2 618.2608642578125 MULTI HCD FTMS 0 0 0 18912 63246.6953125 1 0 0 5 Oxidation (M) _TLYM(Oxidation (M))EEGETF_ REV__ENSG00000173210|ENST00000309868|ABLIM3;REV__nc|ENSG00000173210|O94929-2|ABLIM3;REV__nc|ENSG00000173210|O94929-3|ABLIM3 9.38312468134398 0.42334543440173333 1 HWT{M(Oxidation (M))|F} 4 -1 27.964 0 0 2.2652 0 0 645.2590199201187 0 645.2590199201187 0 16.169183104760734 0 0 0 0.8807196863200843 0 0 0 HWT{M(Oxidation (M))|F} 2.2652 - 152 NaN NaN 111636.9 NaN 15249 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18918 78.21 NaN 90279 35 0 6532.5 0.262 + 8708 HGQKKHKR 8 41 509.8037440715014 1017.5929352098028 2 509.8044128417969 MULTI HCD FTMS 0 0 0 18912 38908.0078125 0.729819533162278 5 -0.1571044921875 6 Unmodified _HGQKKHKR_ REV__ENSG00000115568|ENST00000411696|ZNF142;REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF;REV__nc|ENSG00000115568|P52746|ZNF142 0.7936320650641473 0.540814922690045 1 {I|L}DA 3 -1 16.198 0 0 1.5918 0 0 130.21355396155906 585.2168062799436 715.4303602415027 0 0 0 0 0 0 0 0 0 {I|L}DA 1.5918 - 12 + NaN NaN 101840.3 NaN 15250 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18919 78.214 NaN 48146 35 0 5534 0.261 + 22785 QYLDNLLVRF 10 39 640.8536199524714 1279.6926869717427 2 640.8544921875 MULTI HCD FTMS 0 0 0 18912 7623.0498046875 0.017323581384316514 11 -0.3376312255859375 7 Unmodified _QYLDNLLVRF_ ENSG00000121879|ENST00000263967|PIK3CA 5.296884461304476 0.4472664531305844 1 {I|L} 1 9 6.9897 0 0 0.5462 0 0 437.2769287703739 726.3105562799436 1163.5874850503176 0 0 0 0 0 0 0 0 0 + {I|L} 0.5462 + + 12 + NaN NaN 81989 NaN 15251 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18920 78.217 NaN 103350 35 0 6453.9 0.261 + 33613 YISKSLGSNLL 11 62 597.8400638520732 1193.6655747709463 2 597.8411254882812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YISKSLGSNLL_ REV__ENSG00000166415|ENST00000360509|WDR72;REV__WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant 10.799506525563784 0.36298595732910816 1 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 24.437 0 0 2.0472 0 0 0 767.4619059079181 767.4619059079181 2.6709779556855295 0 0 0 0 0 2 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.0472 - 19 NaN NaN 99024.1 NaN 15252 3666 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18922 78.222 NaN 383690 35 0 160040 0.326 -1 LYPQFMFHL 9 56 606.2992298592186 1210.583906785237 2 606.2998657226562 MULTI HCD FTMS 0 0 0 18921 111388.1875 0.006958239544870381 143 -4.1024932861328125 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 18.13498045792455 0.20367413111508956 1 [Y{I|L}][QP]{M(Oxidation (M))|F} 5 -1 26.21 0 0 2.1651 0 0 0 559.2325533502561 559.2325533502561 20.72559982972642 0 0 0 0 0.7742275032520141 1.6989700043360187 0 0 [Y{I|L}][QP]{M(Oxidation (M))|F} 2.1651 + + 21 + NaN NaN 134975.8 NaN 15253 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18923 78.226 NaN 197300 35 0 68282 0.264 + 6038 FPDTPLAL 8 40 437.23933244578126 872.4641119583625 2 437.23944091796875 MULTI HCD FTMS 0 0 0 18921 124898.2421875 0.6453122614688116 7 -0.212799072265625 2 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 26.34127834903884 0.3999841173197873 1 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3321367159782 0 670.3321367159782 0 29.710040265111566 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 35 + NaN NaN 108568.4 NaN 15254 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18924 78.23 NaN 610130 35 0 108880 0.261 + 26952 SYLITSVEL 9 57 512.7818348522122 1023.5491167712245 2 512.7818603515625 MULTI HCD FTMS 0 0 0 18921 182327.953125 0.202576682698751 -4 0.114776611328125 3 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 107.1870275148908 0.00340162908551068 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 9 0 + 83.739 0 0 8.1812 8.1812 96.716 0 0 0 4.762036441594191 72.76979068265724 4.762036441594191 54.39510361059405 0 2.4604093769761874 0 1.2302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[{I|L}A][MT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[{I|L}A]{I|L}[MT] 8.1812;2.8669;1.5222 +;-;- + 234 NaN NaN 178383.2 NaN 15255 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18925 78.233 NaN 338440 35 0 60771 0.261 + 18707 MYPYIFHVL 9 65 591.8043054191721 1181.5940579051442 2 591.8050537109375 MULTI HCD FTMS 0 0 0 18921 95016.65625 0.1266139090147042 12 -0.3638153076171875 4 Unmodified _MYPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 45.7499826716795 0.03894913563566938 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}H[{I|L}V] 9 0 + 32.162 0 0 2.722 2.722 87.824 0 0 0 13.746068678535796 4.137342758552695 4.137342758552695 32.1624437575833 0 1.1861818737241734 2 0 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}H[{I|L}V] 2.722 + + 275 NaN NaN 134728.1 NaN 15256 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18926 78.236 NaN 230240 35 0 37457 0.261 -1 LYMPKLLYF 9 46 602.3273945327406 NaN 0 602.3136596679688 PEAK HCD FTMS 0 0 0 18921 27662.583984375 1 0 0 5 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 7.289230182591677 0.2599242500475609 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 -1 10.713 0 0 0.89082 0 0 165.1080203744694 463.21076379947505 628.3187841739444 0 0 0 0 0 0 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 0.89082 - 29 + NaN NaN 128581.4 NaN 15257 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18927 78.24 NaN 145740 35 0 19465 0.263 -1 0 55 465.77750548458 929.54045803596 2 465.77740478515625 MULTI HCD FTMS 0 0 0 18921 77518.296875 0.278964339678574 18 -0.5241241455078125 6 NaN NaN 1 N 1 -1 0.3786 0 0 0.04073 0 0 553.3537342584194 259.1190279596313 812.4727622180508 0 0 0 0 0 0 0 0 0 N 0.04073 - 3 + NaN NaN 104250.9 NaN 15258 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18928 78.243 NaN 109000 35 0 17883 0.261 + -1 LLVSHMVMI 9 41 529.7909531642633 1057.5673533953266 2 529.79150390625 MULTI HCD FTMS 0 0 0 18921 22784.30078125 0.3928201260762214 1 -0.03626251220703125 7 Oxidation (M) _LLVSHM(Oxidation (M))VMI_ REV__ENSG00000132518|ENST00000254854|GUCY2D 16.942295170755138 0.21397866736869717 1 [YV]V{I|L}T 5 -1 49.565 0 0 4.6867 0 0 0 479.2091463678344 479.2091463678344 49.56485629844558 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 [YV]V{I|L}T 4.6867 - 22 + NaN NaN 96049.1 NaN 15259 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18929 78.246 NaN 92999 35 0 7593.2 0.261 + 17488 LYTDITVLRT 10 50 597.8400638520732 1193.6655747709463 2 598.3402709960938 MULTI HCD FTMS 0 0 0 18921 40336.9609375 0.09193610640115475 -16 0.46271514892578125 8 Unmodified _LYTDITVLRT_ ENSG00000137460|ENST00000511601|FHDC1 10.073929032068715 0.4168838835836452 1 {I|L}E{I|L} 3 8 20.177 0 0 1.6904 0 0 820.4322376935562 0 820.4322376935562 0 8.822362006615165 0 0 0 0 0 0 0 {I|L}E{I|L} 1.6904 - 22 NaN NaN 92907.7 NaN 15260 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18930 78.25 NaN 117020 35 0 17467 0.261 -1 0 49 542.271872248195 541.264595781595 1 542.2720336914062 MULTI HCD FTMS 0 0 0 18921 29203.265625 0.6901396085885966 -1 0.02951812744140625 9 NaN NaN 1 {I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 4 -1 18.188 0 0 3.3602 0 0 62.98467353199573 0 62.98467353199573 0 2.7030375612038426 0 0 0 0 0 0.5 0 {I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 3.3602 - 15 + NaN NaN 98748.8 NaN 15261 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18931 78.253 NaN 139760 35 0 16573 0.261 + 26971 SYLLTYLSS 9 48 523.7727010481558 1045.5308491631115 2 523.7734985351562 MULTI HCD FTMS 0 0 0 18921 37294.13671875 0.2292046121620268 -3 0.07523345947265625 10 Unmodified _SYLLTYLSS_ ENSG00000113119|ENST00000394671|TMCO6;ENST00000505086.2_1_5:140019102-140021704:+|nuORF;ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENST00000511410.5_1_5:140021383-140021704:+|nuORF;nc|ENSG00000113119|Q96DC7-2|TMCO6 29.081581746732265 0.1154664336125038 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}T[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F} 9 4 + 48.121 0 0 4.6026 4.6026 87.555 0 0 0 34.14197490877392 11.170912423450403 11.170912423450403 13.52182518111362 0 1.6237125054200234 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}T[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}T[VS][YT];[HM]{[TV]|[{I|L}S]}T{I|L}{I|L}[MT];[HM]{[TV]|[{I|L}S]}T{I|L}[MT]{I|L} 4.6026;3.3093;3.0214;2.6151 -;-;-;- 91 + NaN NaN 107456.2 NaN 15262 3667 18921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18933 78.258 NaN 1825300 35 0 209690 0.327 + 13430 KYPENFFLL 9 107 585.8132425088911 1169.6119320845821 2 585.8134765625 MULTI HCD FTMS 0 0 0 18932 1321762.5 0.006666854132073835 101 -2.904937744140625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 92.498 0 0 7.9084 7.9084 90.08 0 0 0 8.310384486277798 16.478174818886373 8.310384486277798 8.310384486277798 0 2.594187677400525 0 0.28872548999643577 1.9846368802282017 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.9084;7.1979;7.1211;7.0882;6.4106;6.3777;6.3009;6.1762;5.9865;5.8615 +;-;-;-;-;-;-;-;-;- + 4639 NaN NaN 370565.9 NaN 15263 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18934 78.262 NaN 903660 35 0 255050 0.261 + 20064 NYIPRFWTF 9 65 622.3163957915608 1242.6182386499215 2 622.3163452148438 MULTI HCD FTMS 0 0 0 18932 502099.53125 0.03655649117131883 20 -0.5728988647460938 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 85.64151623876279 0.004640175941193596 1 [YN]{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 85.2 0 0 6.8565 6.8565 92.873 0 0 0 22.966430335102288 16.478174818886373 16.478174818886373 22.966430335102288 0 1.7302046884880937 1.6989700043360187 0.4247425010840047 1.079689690656103 + + [YN]{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]N[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]GG[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[YN]{I|L}{M(Oxidation (M))|F}[RV][NS][KC];[Y{I|L}]{[CA]|SS}[RV]{M(Oxidation (M))|F}WW 6.8565;5.0082;3.9608;3.35;3.0256;2.0483 +;-;-;-;-;- + 324 NaN NaN 232782 NaN 15264 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18935 78.266 NaN 524750 35 0 186250 0.261 + 9738 HYATLYFVF 9 55 580.7923108403932 1159.5700687475862 2 580.7925415039062 MULTI HCD FTMS 0 0 0 18932 414520.65625 0.43467726591924516 6 -0.17653656005859375 3 Unmodified _HYATLYFVF_ ENSG00000157823|ENST00000336418|AP3S2;ENSG00000177879|ENST00000316788|AP3S1;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;nc|ENSG00000157823|P59780-2|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN 23.1484247019978 0.1603590852062899 1 C{I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 5 47.959 0 0 4.1359 0 0 532.2781849591812 0 532.2781849591812 0 29.89425760387208 0 0 0 1.5 0 0 0 C{I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.1359 - 40 NaN NaN 159183.6 NaN 15265 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18936 78.269 NaN 655240 35 0 37544 0.261 + 34565 YPLLLKEIL 9 70 551.3496997816405 1100.684846630081 2 551.3496704101562 MULTI HCD FTMS 0 0 0 18932 396905.5625 0.4334963677508179 -8 0.2264404296875 4 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 82.5293158979368 0.005033931517079822 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 9 0 + 79.403 0 0 7.2139 7.2139 91.943 0 0 0 9.72234667441434 36.222412206649466 9.72234667441434 12.742727328383694 0 2.274227503252014 1.6989700043360187 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}K{I|L};[{I|L}P]Y{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{I|L}{I|L}PY{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{I|L}P]Y{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}K{I|L};[{I|L}P]{I|L}{I|L}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}{[QN]|[E{I|L}]|[KN]}K{I|L};{I|L}{I|L}P{I|L}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 7.2139;6.0562;5.8927;5.7792;5.165;5.0515;4.735;4.0757;4.0073;3.9622 +;-;-;-;-;-;-;-;-;- + 405 NaN NaN 181296.7 NaN 15266 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18937 78.275 NaN 424170 35 0 53073 0.261 + 17449 LYSGPDRYIF 10 74 615.811811916024 1229.609070898848 2 616.299072265625 MULTI HCD FTMS 0 0 0 18932 27494.482421875 0.14236674731149954 8 -0.23900604248046875 5 Unmodified _LYSGPDRYIF_ REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__nc|ENSG00000008710|P98161-2|PKD1;REV__nc|ENSG00000008710|P98161-3|PKD1 18.1463463914782 0.3413772152514074 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 63.586 0 0 5.1713 0 0 0 127.09751795105161 127.09751795105161 14.514706813623157 0 0 0 0 0 1.6989700043360187 1.8539171939081172 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1713 - 1444 NaN NaN 147658.3 NaN 15267 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18938 78.279 NaN 371370 35 0 41184 0.261 + 1405 AYQHLFYLL 9 82 584.3134625536912 1166.6123721741824 2 584.3136596679688 MULTI HCD FTMS 0 0 0 18932 144767.84375 0.3117204207087926 32 -0.9119415283203125 6 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}Y{I|L}{I|L} 4 5 37.691 0 0 3.2308 0 0 612.300096580275 0 612.300096580275 0 14.313637641589878 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}Y{I|L}{I|L} 3.2308 + + 293 NaN NaN 135968 NaN 15268 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18939 78.282 NaN 232140 35 0 15000 0.261 + 4765 EYTSILHLF 9 73 561.7949109736411 1121.575269014082 2 561.7957153320312 MULTI HCD FTMS 0 0 0 18932 51932.28125 0.2762384772710348 3 -0.0913238525390625 7 Unmodified _EYTSILHLF_ ENSG00000198799|ENST00000361127|LRIG2 24.67388899826682 0.14717941214954053 1 P{I|L}GC(Carbamidomethyl (C)){I|L}H{I|L}{M(Oxidation (M))|F} 8 5 43.085 0 0 3.8414 0 0 166.06374665255709 0 166.06374665255709 0 34.105187973125624 0 0 0 0 0 0 0 P{I|L}GC(Carbamidomethyl (C)){I|L}H{I|L}{M(Oxidation (M))|F} 3.8414 - 638 + NaN NaN 110693.6 NaN 15269 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18940 78.285 NaN 345670 35 0 56681 0.261 + 19406 NPFYPEVEL 9 59 554.2715561643163 1106.5285593954325 2 554.271728515625 MULTI HCD FTMS 0 0 0 18932 149784.5625 0.7644133504478609 -2 0.0657806396484375 8 Unmodified _NPFYPEVEL_ ENSG00000196611|ENST00000315274|MMP1 26.268140514670165 0.13340543277302316 1 [Y{I|L}][MN][EP]VE 8 5 39.627 0 0 3.5812 0 0 0 128.07326178981376 128.07326178981376 24.729524540212324 0 0 0 0 1.4247425010840047 1.5228787452803376 0.3252574989159953 0.3252574989159953 [Y{I|L}][MN][EP]VE 3.5812 - 86 NaN NaN 128513 NaN 15270 3668 18932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18942 78.29 NaN 604490 35 0 67439 0.327 + 16388 LSGYFVPFIV 10 86 571.3184414908901 1140.6223300485801 2 572.3079833984375 MULTI HCD FTMS 0 0 0 18941 14842.79296875 0.3135994225437062 2 -0.059112548828125 1 Unmodified _LSGYFVPFIV_ ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A 25.399314129420986 0.2735354021946395 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D 4 7 31.682 0 0 2.7776 0 0 0 649.3725422946153 649.3725422946153 10 0 0 0 0 0 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D 2.7776 - 768 NaN NaN 174065.6 NaN 15271 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18943 78.295 NaN 445300 35 0 38502 0.261 + 228 AFDLIEHYF 9 76 577.7794604697037 1153.5443680062074 2 577.7796020507812 MULTI HCD FTMS 0 0 0 18941 185002.359375 0.5591597126786904 3 -0.08533477783203125 2 Unmodified _AFDLIEHYF_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant 78.14939416004806 0.006451203201226903 1 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F} 9 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 70.17 3.7236 1.7073 6.083 6.083 63.434 0 0 0 0 53.71600731282193 0 0 0 2.6989700043360187 0 0.3494850021680094 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F} 6.083 + + 366 + NaN NaN 151333.6 NaN 15272 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18944 78.298 NaN 801300 35 0 83195 0.261 + 34785 YQTPRLWLF 9 79 612.3323844797587 1222.6502160263174 2 612.33251953125 MULTI HCD FTMS 0 0 0 18941 240788.390625 0.11454315893914982 -5 0.143707275390625 3 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 99.75527289724121 0.004270341300239591 1 [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F} 9 0 + 74.623 0 0 6.1034 6.1034 93.536 0 0 0 14.647642715192504 66.836361139704 14.647642715192504 74.62295808962521 0 1.8851518780601921 0 1.7179001828205482 0.75 + + [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F} 6.1034 + + 258 NaN NaN 208109.7 NaN 15273 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18945 78.302 NaN 169450 35 0 8588.2 0.264 + 12398 KPGKGARAE 9 63 457.2642199679544 912.5138870027088 2 457.264404296875 MULTI HCD FTMS 0 0 0 18941 155101.40625 0.2156393318890889 76 -2.1819839477539062 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 Q 1 9 13.979 0 0 1.532 0 0 414.2444605884494 367.19660364322505 781.4410642316744 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.532 - 63 + NaN NaN 100886 NaN 15274 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18946 78.305 NaN 186790 35 0 55280 0.261 -1 0 49 404.18801292452684 806.3614729158537 2 404.1882019042969 MULTI HCD FTMS 0 0 0 18941 54327.8203125 0.1429482928005294 39 -1.11932373046875 5 NaN NaN 1 Q 1 -1 5.4846 0 0 0.68016 0 0 172.1575677418287 503.12290369205317 675.2804714338819 0 0 0 0 0 0 0 0 0 Q 0.68016 - 2 + NaN NaN 113015.1 NaN 15275 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18947 78.308 NaN 740580 35 0 137710 0.261 + 24956 RYTFYVLEF 9 67 619.3163286234789 1236.6181043137576 2 619.3156127929688 MULTI HCD FTMS 0 0 0 18941 209911.796875 0.13401012209541682 -5 0.143707275390625 6 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 43.981846655682396 0.04706587046877104 1 {[QN]|[E{I|L}]|[KN]}VEPYV{I|L}E 9 6 75.544 0 0 6.1089 0 0 0 162.05593520989842 162.05593520989842 61.23019538504403 0 0 0 0 1.9247425010840047 1.5228787452803376 0.8494850021680094 0 {[QN]|[E{I|L}]|[KN]}VEPYV{I|L}E 6.1089 - 325 NaN NaN 191278.9 NaN 15276 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18948 78.312 NaN 207960 35 0 61211 0.264 + 8726 HHGAGAFF 8 36 422.19864156822445 842.3827302032489 2 422.198486328125 MULTI HCD FTMS 0 0 0 18941 55875.2421875 0.060246876004110245 -15 0.43590545654296875 7 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3036877001224 0 677.3036877001224 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 1 + NaN NaN 117419.4 NaN 15277 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18949 78.315 NaN 81584 35 0 10815 0.261 -1 0 39 638.3114108957272 1274.6082688582544 2 638.31103515625 MULTI HCD FTMS 0 0 0 18941 53498.8828125 0.055955028801752946 21 -0.5997772216796875 8 NaN NaN 1 E{I|L}D[SG] 5 -1 21.198 0 0 1.6631 0 0 755.387498924025 0 755.387498924025 0 12.218487496163561 0 0 0 0.5 0 0 0 E{I|L}D[SG] 1.6631 - 9 NaN NaN 88149.6 NaN 15278 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18950 78.318 NaN 53461 35 0 13064 0.261 + 22461 QQRPPHLVHH 10 34 624.8406372070312 NaN 0 624.8406372070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _QQRPPHLVHH_ ENSG00000184486|ENST00000328345|POU3F2;POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant 1.6526216038709556 0.33876987398426067 1 C 1 10 6.9897 0 0 0.56159 0 0 462.3242453107437 676.2782076471311 1138.602452957875 0 0 0 0 0 0 0 0 0 C 0.56159 - 1 + NaN NaN 91034.8 NaN 15279 3669 18941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18952 78.323 NaN 2659800 35 0 405030 0.327 + 13739 KYPSPFFVF 9 105 566.297318493246 1130.580084053292 2 566.297607421875 MULTI HCD FTMS 0 0 0 18951 1602410.25 0.018670504636370246 44 -1.250213623046875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 118.89474601620944 0.0014903111061077812 1 KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 83.242 0 0 7.3628 7.3628 87.844 0 0 0 4.847594070116017 4.847594070116017 4.847594070116017 4.847594070116017 0 2.805462187404089 0 0.9604093769761876 0 + + KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]P{M(Oxidation (M))|F}SAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.3628;6.934;5.719;5.0302;5.0065;4.8628;4.8103;4.6082;4.5693;4.5181 +;+;-;-;-;-;-;-;-;- + 4550 + NaN NaN 487649.8 NaN 15280 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18953 78.328 NaN 607510 35 0 31988 0.261 -1 0 88 479.2774935703601 956.5404342075202 2 479.27752685546875 MULTI HCD FTMS 0 0 0 18951 435469.875 0.40790889841522754 -14 0.4097442626953125 2 NaN NaN 1 V 1 -1 8.8515 0 0 0.92537 0 0 630.3465082815421 224.09763513736564 854.4441434189077 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.92537 - 45 + NaN NaN 184089.4 NaN 15281 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18954 78.331 NaN 419020 35 0 33749 0.261 + 25387 SEIELFRVF 9 79 570.3081666651008 1138.6017803970014 2 570.3082275390625 MULTI HCD FTMS 0 0 0 18951 251249.671875 0.61937917479635 2 -0.0524139404296875 3 Unmodified _SEIELFRVF_ ENSG00000144028|ENST00000323853|SNRNP200 55.50274090549119 0.023872834264864425 1 MYRV{M(Oxidation (M))|F} 5 6 43.8 0 0 3.8468 0 0 424.2417044154026 0 424.2417044154026 0 12.117581349478641 0 0 0 1.4247425010840047 0 0 0 MYRV{M(Oxidation (M))|F} 3.8468 - 415 + NaN NaN 154227.8 NaN 15282 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18955 78.334 NaN 297880 35 0 18766 0.261 + 26372 SSRKRLVE 8 80 487.79078151675463 973.5670101003093 2 487.7907409667969 MULTI HCD FTMS 0 0 0 18951 259022.46875 0.4173259741032625 -14 0.4097442626953125 4 Unmodified _SSRKRLVE_ REV__ENSG00000156234|ENST00000682537|CXCL13 4.75600775471527 0.5349361699807423 1 [RH]P 3 -1 5.6864 0 0 0.58408 0 0 0 580.3270558368905 580.3270558368905 2.1915123367300327 0 0 0 0 0 0 0 0 [RH]P 0.58408 - 17 NaN NaN 131523 NaN 15283 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18956 78.338 NaN 312960 35 0 39240 0.261 -1 TPQFPDMIL 9 52 539.2679517160655 1076.5213504989308 2 539.26806640625 MULTI HCD FTMS 0 0 0 18951 115907.75 0.006200581884897933 94 -2.688720703125 5 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 17.11289562659939 0.2125047172822487 1 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3425591888661 0 832.3425591888661 0 8.979400086720375 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 19 NaN NaN 134615.9 NaN 15284 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18957 78.341 NaN 133500 35 0 45522 0.261 + 32802 WSTESFLL 8 32 491.7476421370131 981.4807313408262 2 491.7477722167969 MULTI HCD FTMS 0 0 0 18951 91557.7734375 0.6830031145850489 3 -0.0919036865234375 6 Unmodified _WSTESFLL_ REV__ENSG00000122008|ENST00000241436|POLK;REV__nc|ENSG00000122008|Q9UBT6-2|POLK;REV__nc|ENSG00000122008|Q9UBT6-4|POLK;REV__nc|ENSG00000122008|Q9UBT6-5|POLK;REV__nc|ENSG00000122008|Q9UBT6-6|POLK;REV__nc|ENSG00000122008|Q9UBT6-7|POLK;REV__nc|ENSG00000122008|Q9UBT6-8|POLK 9.347437153973935 0.5250182646323369 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6459 0 0 737.3009296196549 0 737.3009296196549 0 18.521825181113627 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6459 + + 4 NaN NaN 99061.7 NaN 15285 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18958 78.344 NaN 210520 35 0 26647 0.261 + 15762 LPFSAGPTDVL 11 63 558.8002739498132 1115.5859949664264 2 558.8003540039062 MULTI HCD FTMS 0 0 0 18951 99268.25 0.905228192189696 2 -0.0524139404296875 7 Unmodified _LPFSAGPTDVL_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 24.990960013464015 0.23933535780272686 1 DV{I|L} 3 8 33.188 0 0 2.9749 0 0 770.3950062482437 0 770.3950062482437 0 10 0 0 0 0.8494850021680094 0 0 0 + DV{I|L} 2.9749 + + 112 NaN NaN 112112.8 NaN 15286 3670 18951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18960 78.349 NaN 2891500 35 0 309740 0.327 + 6406 FPHLTVVLL 9 110 519.8211470376159 1037.6277411420317 2 519.8211059570312 MULTI HCD FTMS 0 0 0 18959 2565618 0.4753626894044668 -5 0.1571044921875 1 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 114.94377779790601 0.0021353177819039447 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L} 9 0 + 71.495 0 0 6.8902 6.8902 85.803 0 0 0 0.9421249706470292 17.470390930149684 0.9421249706470292 2.430380486862944 0 1.8737125054200234 0 1.416386562212267 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TVV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TV{I|L}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}{I|L}SV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TV{I|L}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}VTV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}{I|L}SV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}VTV{I|L}{I|L};[{I|L}V]VTHP{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TV{I|L}{I|L}V 6.8902;6.656;5.9252;5.7992;5.6909;5.5854;5.565;5.3512;5.3045;5.0603 +;-;-;-;-;-;-;-;-;- + 1768 NaN NaN 518097.1 NaN 15287 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18961 78.354 NaN 360940 35 0 43222 0.261 + 17846 MHTFQDGLE 9 61 539.2374290722795 1076.460305211359 2 539.237548828125 MULTI HCD FTMS 0 0 0 18959 99716.375 0.7751771717396613 1 -0.02622222900390625 2 Unmodified _MHTFQDGLE_ ENSG00000124602|ENST00000244565|UNC5CL 6.2057823575117 0.30397260197431997 1 M{I|L} 2 7 20.969 0 0 1.948 0 0 0 829.3203480547959 829.3203480547959 5.3959062302381255 0 0 0 0 0 0 0 0 M{I|L} 1.948 - 28 + NaN NaN 140363.7 NaN 15288 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18962 78.357 NaN 185370 35 0 22703 0.261 + -1 DLDTMPFEL 9 54 548.7470363718642 1095.4795198105282 2 548.74755859375 MULTI HCD FTMS 0 0 0 18959 41258.39453125 0.33913551268333514 11 -0.3182525634765625 3 Oxidation (M) _DLDTM(Oxidation (M))PFEL_ REV__ENSG00000100284|ENST00000449058|TOM1;REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF;REV__ENST00000424387.5_1_22:35695884-35743199:+|nuORF;REV__nc|ENSG00000100284|O60784-2|TOM1;REV__nc|ENSG00000100284|O60784-4|TOM1 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F}E{I|L} 3 -1 33.94 0 0 3.0982 0 0 688.2750394051209 0 688.2750394051209 0 18.455612550363796 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}E{I|L} 3.0982 + + 208 NaN NaN 107298.1 NaN 15289 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18963 78.361 NaN 183490 35 0 22791 0.261 + -1 YVARCDREDC 10 53 643.765598796343 1285.516644659486 2 643.766845703125 MULTI HCD FTMS 0 0 0 18959 36798.328125 0.22084306770509135 15 -0.4159393310546875 4 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 5.731851221503515 0.44496410492002586 1 [YV]AS{M(Oxidation (M))|F} 5 -1 44.693 0 0 3.4766 0 0 0 715.2269991510374 715.2269991510374 23.723637474483468 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [YV]AS{M(Oxidation (M))|F} 3.4766 - 93 + NaN NaN 115074.9 NaN 15290 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18964 78.364 NaN 280510 35 0 53926 0.262 + -1 LYLSMCLF 8 63 531.7553066644285 1061.496060395657 2 531.7555541992188 MULTI HCD FTMS 0 0 0 18959 25451.44140625 0.48825081865730086 1 -0.02622222900390625 5 Carbamidomethyl (C),Oxidation (M) _LYLSM(Oxidation (M))C(Carbamidomethyl (C))LF_ REV__ENSG00000115657|ENST00000265316|ABCB6;REV__ENST00000446716.5_1_2:220075515-220081188:-|nuORF;REV__ENST00000497882.5_1_2:220079653-220079878:-|nuORF;REV__nc|ENSG00000115657|Q9NP58-4|ABCB6 10.183394434864962 0.5188676124868831 1 {I|L}{[WT]|[RM]}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 -1 + 30.182 0 0 2.8434 2.8434 85.063 0 0 0 7.275071725447404 10.177287669604311 7.275071725447404 10.796896906561027 0 0 0 0.3807196863200844 0 {I|L}{[WT]|[RM]}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[RP]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.8434;1.8262 -;- 99 + NaN NaN 116632.5 NaN 15291 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18965 78.367 NaN 265550 35 0 19755 0.261 + -1 GSMILMCNLLF 11 72 629.3066532826065 1256.5987536320129 2 629.30712890625 MULTI HCD FTMS 0 0 0 18959 30913.51171875 0.026276735411071887 23 -0.6487503051757812 6 Oxidation (M) _GSM(Oxidation (M))ILMCNLLF_ REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF 8.155526934196011 0.3831532958467648 1 {I|L} 1 -1 14.292 0 0 1.1373 0 0 852.4294859091598 288.0627840631469 1140.4922699723068 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L} 1.1373 + + 34 + NaN NaN 119589.7 NaN 15292 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18966 78.371 NaN 112330 35 0 8058.9 0.264 + 20965 PLGPEPLTL 9 53 468.7735670339881 935.5325811347763 2 469.27490234375 MULTI HCD FTMS 0 0 0 18959 18536.224609375 0.5142438417837132 1 -0.02622222900390625 7 Unmodified _PLGPEPLTL_ REV__ENST00000464431.1_1_3:127396482-127396803:+|nuORF 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}{I|L}[{I|L}T] 4 -1 29.253 0 0 3.1268 0 0 443.23736905935846 0 443.23736905935846 0 21.80523450795789 0 0 0 1.305462187404089 0 0 0 {M(Oxidation (M))|F}{I|L}[{I|L}T] 3.1268 - 33 + NaN NaN 101575.2 NaN 15293 3671 18959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18968 78.376 NaN 1250700 35 0 195360 0.327 + 26953 SYLITSVEL 9 76 512.7818348522122 1023.5491167712245 2 512.7818603515625 MULTI HCD FTMS 0 0 0 18967 505987.5625 0.5621808403004686 1 -0.03948974609375 1 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 131.26759243768294 0.0005280990274065272 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 9 0 + 85.455 0 0 8.3489 8.3489 97.084 0 0 0 3.65279269351241 53.564921830680696 3.65279269351241 56.56926918935653 0 2.548455006504028 0 1.5356668758921828 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[{I|L}A][MT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}A]{I|L}{I|L}[MT] 8.3489;2.8222;1.7455 +;-;- + 565 NaN NaN 274786.7 NaN 15294 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18969 78.38 NaN 872680 35 0 424350 0.261 + 464 ALPYFWEHF 9 60 605.2901000226736 1208.5656471121472 2 605.2901000976562 MULTI HCD FTMS 0 0 0 18967 326655.5 0.35203289105444413 -4 0.11754608154296875 2 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 36.506200033944 0.08138327636155518 1 [{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 43.42 0 0 3.5927 3.5927 86.041 0 0 0 10.719290115807638 5.159167939666318 5.159167939666318 12.641368885835217 0 1.6307196863200843 0 0 0 + + [{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]};[{I|L}A]PY{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L}WEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}[KA]{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}N{M(Oxidation (M))|F}[KA]{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F};[{I|L}A][C(Carbamidomethyl (C))S]W{I|L}A{M(Oxidation (M))|F}QN;[{I|L}A]P{[ET]|[MV]}{[YC]|[HE]}E{[{M(Oxidation (M))|F}H]|[RQ]} 3.5927;2.5467;2.1509;2.0023;1.6508;1.5113;1.3748;0.9643 +;+;-;-;-;-;-;- + 285 + NaN NaN 227839.8 NaN 15295 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18970 78.384 NaN 307650 35 0 26055 0.261 + 19768 NYAWVYYHL 9 66 614.7929789950731 1227.571405056946 2 614.792724609375 MULTI HCD FTMS 0 0 0 18967 100477.046875 0.37687833133227266 48 -1.375091552734375 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.0072241045649327805 1 [YN]AWVYYH{I|L} 9 0 + 94.21 0 0 7.6745 7.6745 95.566 0 0 0 27.254406279932653 85.53781560677692 27.254406279932653 45.17851293743831 0 2.4247425010840047 1.6989700043360187 0 1.392159058960253 + + [YN]AWVYYH{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[C(Carbamidomethyl (C))R]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YH{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VQQ[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.6745;3.9942;3.9928;3.1484;0.11905;0.051932 +;-;-;-;-;- + 270 NaN NaN 132299.1 NaN 15296 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18971 78.387 NaN 234060 35 0 20166 0.261 -1 LMAVGRAWAW 10 59 588.8053646971812 1175.5961764611623 2 589.3182983398438 MULTI HCD FTMS 0 0 0 18967 14446.1826171875 0.7729724959174754 -1 0.02622222900390625 4 Oxidation (M) _LM(Oxidation (M))AVGRAWAW_ ENST00000462392.5_1_2:131104212-131104311:+|nuORF 10.823927491677226 0.4098686510432541 1 YY{I|L} 3 -1 25.942 0 0 2.2067 0 0 0 733.3614512965298 733.3614512965298 4.515449934959715 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 2.2067 - 122 NaN NaN 115804.8 NaN 15297 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18972 78.39 NaN 176090 35 0 18683 0.261 + 15538 LPDPRELIEI 10 49 597.8400638520732 1193.6655747709463 2 597.8401489257812 MULTI HCD FTMS 0 0 0 18967 77809.9765625 0.12292015075139724 -12 0.34398651123046875 5 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 14.218169984304629 0.37812005199054677 1 {I|L}PD 3 7 30.177 0 0 2.5281 0 0 0 865.4793537396498 865.4793537396498 15.242275032520139 0 0 0 0 0.5 0 0.5 0 + {I|L}PD 2.5281 + + 81 + NaN NaN 122362.2 NaN 15298 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18973 78.393 NaN 174690 35 0 28503 0.261 -1 LYMPKLLYF 9 47 602.3273945327406 NaN 0 602.3135986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 7.289230182591677 0.2599242500475609 1 YVVP{I|L} 5 -1 10.713 0 0 0.89082 0 0 165.10404349036054 463.20807825260005 628.3121217429606 0 0 0 0 0 0 0 0 0 YVVP{I|L} 0.89082 - 19 + NaN NaN 112070.1 NaN 15299 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18974 78.397 NaN 108220 35 0 16014 0.263 + 16666 LWIMIALA 8 45 465.77750548458 929.54045803596 2 465.77789306640625 MULTI HCD FTMS 0 0 0 18967 79970.1796875 0.28778790646644153 23 -0.658782958984375 7 Unmodified _LWIMIALA_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 0.7936320650641473 0.540814922690045 1 [W{I|L}]{M(Oxidation (M))|F} 3 5 5.6864 0 0 0.61174 0 0 0 480.32623009090065 480.32623009090065 1.7069622716897515 0 0 0 0 0 0 0 0 + [W{I|L}]{M(Oxidation (M))|F} 0.61174 + + 19 NaN NaN 98108.2 NaN 15300 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18975 78.4 NaN 257230 35 0 16746 0.261 + 22170 QKYHYEKLF 9 82 628.3274017270243 1254.6402505208484 2 628.32763671875 MULTI HCD FTMS 0 0 0 18967 75804.109375 0.5191422247599611 -2 0.0524139404296875 8 Unmodified _QKYHYEKLF_ REV__ENSG00000171150|ENST00000394861|SOCS5 13.90604991867851 0.24021115267848145 1 M{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 6 -1 36.493 0 0 2.9086 0 0 514.2772694318375 0 514.2772694318375 0 20.361505008364823 0 0 0 0.5 0 0.7302046884880937 0 M{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 2.9086 - 767 NaN NaN 119921 NaN 15301 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18976 78.403 NaN 188410 35 0 24854 0.262 + 6632 FPLSHFLSL 9 74 530.7948925445991 1059.575232155998 2 530.795166015625 MULTI HCD FTMS 0 0 0 18967 50590.171875 0.9062689176549011 -3 0.08533477783203125 9 Unmodified _FPLSHFLSL_ ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1|p.F771L|1|0.05|ENSG00000173692|chr2:231161434-231161434|C/G|missense_variant 32.30548876998284 0.10066689432505688 1 {I|L}{M(Oxidation (M))|F}AE 4 7 27.423 0 0 2.5881 0 0 581.2970448224625 0 581.2970448224625 0 11.84955642535897 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F}AE 2.5881 - 127 NaN NaN 108573.5 NaN 15302 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18977 78.407 NaN 205360 35 0 123240 0.261 + 5655 FNKLLMII 8 28 496.3038712465691 990.5931895599382 2 496.3037109375 MULTI HCD FTMS 0 0 0 18967 52129.296875 0.16604909392248696 -13 0.37693023681640625 10 Unmodified _FNKLLMII_ REV__ENSG00000095627|ENST00000695399|TDRD1;REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1;REV__nc|ENSG00000095627|Q9BXT4-3|TDRD1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106178.1 NaN 15303 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18978 78.41 NaN 172980 35 0 14195 0.261 + 4766 EYTSILHLF 9 70 561.7949109736411 1121.575269014082 2 561.793701171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _EYTSILHLF_ ENSG00000198799|ENST00000361127|LRIG2 18.13498045792455 0.20367413111508956 1 P{I|L}GC(Carbamidomethyl (C)){I|L}H{I|L}{M(Oxidation (M))|F} 8 5 28.51 0 0 2.542 0 0 166.06161042208834 0 166.06161042208834 0 5.3225157336903095 0 0 0 0.23020468848809378 0 0 0 P{I|L}GC(Carbamidomethyl (C)){I|L}H{I|L}{M(Oxidation (M))|F} 2.542 - 377 + NaN NaN 105228.7 NaN 15304 3672 18967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18980 78.415 NaN 1639400 35 0 210860 0.327 + 13431 KYPENFFLL 9 110 585.8132425088911 1169.6119320845821 2 585.8135986328125 MULTI HCD FTMS 0 0 0 18979 1095559.5 0.005525906037966537 106 -3.03326416015625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 88.7 0 0 7.5837 7.5837 90.8 0 0 0 7.944539621753535 59.653952429111285 7.944539621753535 9.208187539523749 0 2.504432191740108 0 0.3054621874040891 1.6778259348524363 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.5837;6.7964;6.5466;6.4811;5.9338;5.7593;5.7156;5.704;5.6938;5.444 +;-;-;-;-;-;-;-;-;- + 2808 NaN NaN 335042.2 NaN 15305 3673 18979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18981 78.419 NaN 266020 35 0 79418 0.261 + 9739 HYATLYFVF 9 54 580.7923108403932 1159.5700687475862 2 580.7926025390625 MULTI HCD FTMS 0 0 0 18979 138096.9375 0.1448120819053173 11 -0.30145263671875 2 Unmodified _HYATLYFVF_ ENSG00000157823|ENST00000336418|AP3S2;ENSG00000177879|ENST00000316788|AP3S1;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;nc|ENSG00000157823|P59780-2|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 39.693 0 0 3.4231 0 0 748.3554763478187 0 748.3554763478187 0 35.088643834802156 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.4231 + + 26 NaN NaN 130831.9 NaN 15306 3673 18979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18982 78.423 NaN 406700 35 0 28349 0.261 + 22971 QYVYWLHML 9 78 626.8128134706941 1251.611074008188 2 626.8119506835938 MULTI HCD FTMS 0 0 0 18979 159218.921875 0.7607717397569176 -2 0.06571197509765625 3 Unmodified _QYVYWLHML_ ENSG00000135926|ENST00000258412|TMBIM1 56.541270873467816 0.02242000196051205 1 [YQ]VYW{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 9 0 + 52.38 0 0 4.185 4.185 81.267 0 0 0 2.544321917401078 6.203715150305278 2.544321917401078 2.544321917401078 0 1.031234684152075 0 0.6203715150305281 0 + + [YQ]VYW{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]QYW{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV][AG]YW{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}H[YV];[YV]H{I|L}W{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[H{I|L}][YV]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YV]Q[PS]{[WT]|[RM]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]};[H{I|L}][YV]WYQ{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YQ]V[PS]{[WT]|[RM]}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[{I|L}A][MT]H{[DA]|[EG]}{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 4.185;3.9817;2.9668;2.5447;2.1082;1.6908;1.3749;1.3479;1.3194;1.2271 +;-;-;-;-;-;-;-;-;- + 849 + NaN NaN 139368.5 NaN 15307 3673 18979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18983 78.426 NaN 193080 35 0 17037 0.261 + 34586 YPNHHLAWI 9 63 575.7922546848829 NaN 0 575.7930908203125 PEAK HCD FTMS 0 0 0 18979 49062.2578125 0.31898961673513127 7 -0.2000579833984375 4 Unmodified _YPNHHLAWI_ REV__ENSG00000186160|ENST00000334194|CYP4Z1 12.531546534597751 0.23452071659215576 1 {I|L}{I|L}Y 3 -1 10.177 0 0 0.88531 0 0 204.02440467432024 553.2852266900999 757.30963136442 0 0 0 0 0 0 0 0 0 {I|L}{I|L}Y 0.88531 - 49 + NaN NaN 118387.2 NaN 15308 3673 18979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18984 78.43 NaN 102280 35 0 9174.7 0.261 + 8158 GPKDKRLST 9 60 501.29058431079056 1000.5666156883811 2 501.2908630371094 MULTI HCD FTMS 0 0 0 18979 59004.10546875 0.1037250851881875 -14 0.41641998291015625 5 Unmodified _GPKDKRLST_ REV__ENST00000361337.2_1_20:39751926-39752103:+|nuORF 3.5964929083625545 0.32375295897743744 1 {I|L} 1 -1 5.4846 0 0 0.54814 0 0 368.2472407759489 516.2087272842435 884.4559680601924 0 0 0 0 0 0 0 0 0 {I|L} 0.54814 + + 12 + NaN NaN 93400.4 NaN 15309 3673 18979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18986 78.435 NaN 3149100 35 0 319730 0.327 + 34786 YQTPRLWLF 9 108 612.3323844797587 1222.6502160263174 2 612.3323364257812 MULTI HCD FTMS 0 0 0 18985 2102163 1 0 0 1 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 122.17920374332846 0.0010792739174387011 1 [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F} 9 0 + 87.193 0 0 7.1315 7.1315 91.415 0 0 0 15.202264589233394 61.58005803676351 15.202264589233394 11.561734207603749 0 2.4291746928241125 0 1.7856668758921828 1.0941876774005248 + + [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F};[YQ]TPR{I|L}{I|L}W{M(Oxidation (M))|F};[YQ]R[TP]{I|L}W{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L}RPT{[WS]|[C(Carbamidomethyl (C)){I|L}]};{M(Oxidation (M))|F}[SG]TPR{I|L}W{I|L}{M(Oxidation (M))|F};[YQ]R[TP]{I|L}{I|L}W{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L}[TP]R{[WS]|[C(Carbamidomethyl (C)){I|L}]};[NP][HV][TP]{I|L}W{I|L}{M(Oxidation (M))|F};[W{I|L}][RP]T{I|L}QY{M(Oxidation (M))|F};{M(Oxidation (M))|F}[SG]R[TP]{I|L}W{I|L}{M(Oxidation (M))|F} 7.1315;6.1858;5.2793;5.2015;4.6347;4.3337;3.6607;3.0312;2.8151;2.8089 +;-;-;-;-;-;-;-;-;- + 1512 NaN NaN 564018.8 NaN 15310 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18987 78.439 NaN 1283900 35 0 83989 0.261 + 34566 YPLLLKEIL 9 88 551.3496997816405 1100.684846630081 2 551.3497314453125 MULTI HCD FTMS 0 0 0 18985 626968.25 0.6847685816196812 -2 0.058990478515625 2 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 110.6747026088012 0.0028322563155251486 1 YP{I|L}{I|L}{I|L}KE{I|L}{I|L} 9 0 + 99.91 0 0 9.0771 9.0771 95.409 0 0 0 15.392587542690919 15.392587542690919 15.392587542690919 15.392587542690919 0 2.774227503252014 1.6989700043360187 1.6906140654642812 0.2742275032520141 + + YP{I|L}{I|L}{I|L}KE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]Y{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}KE{I|L}{I|L};{I|L}{I|L}PY{I|L}KE{I|L}{I|L};[Y{I|L}]P{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]{I|L}{I|L}YKE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}K{I|L}{I|L}PY{I|L}{I|L};{I|L}{I|L}P{I|L}YKE{I|L}{I|L};[{I|L}P]{I|L}{I|L}KEY{I|L}{I|L} 9.0771;7.6786;6.4039;5.5161;5.1546;4.8603;4.5149;4.3429;4.1533;3.9778 +;+;-;-;-;-;-;-;-;- + 1085 + NaN NaN 281382.2 NaN 15311 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18988 78.443 NaN 129170 35 0 6115 0.262 + 12399 KPGKGARAE 9 56 457.2642199679544 912.5138870027088 2 457.2643127441406 MULTI HCD FTMS 0 0 0 18985 116448.390625 0.1618995840273669 81 -2.3096771240234375 3 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 1 Q 1 9 10.63 0 0 1.1649 0 0 414.24709084739726 367.1971529596313 781.4442438070286 0 0 0 0 0 0.7134679910804405 0 0 0 Q 1.1649 - 21 + NaN NaN 98870.6 NaN 15312 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18989 78.446 NaN 324810 35 0 32431 0.261 + 19407 NPFYPEVEL 9 66 554.2715561643163 1106.5285593954325 2 554.2714233398438 MULTI HCD FTMS 0 0 0 18985 101898.765625 0.5200320749870839 4 -0.1181793212890625 4 Unmodified _NPFYPEVEL_ ENSG00000196611|ENST00000315274|MMP1 20.41453444215458 0.18397929046831515 1 VE{I|L} 3 6 31.44 0 0 2.8413 0 0 747.3237171857437 0 747.3237171857437 0 14.361818737241734 0 0 0 0.8252574989159953 0 0 0 + VE{I|L} 2.8413 + + 188 NaN NaN 133632.8 NaN 15313 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18990 78.449 NaN 169870 35 0 47910 0.264 -1 0 51 404.18801292452684 806.3614729158537 2 404.18780517578125 MULTI HCD FTMS 0 0 0 18985 40075.4609375 0.1054472403136674 44 -1.2602081298828125 5 NaN NaN 1 Q 1 -1 3.9794 0 0 0.4935 0 0 172.1575682606486 503.1249178522094 675.282486112858 0 0 0 0 0 0 0 0 0 Q 0.4935 - 7 + NaN NaN 103529.2 NaN 15314 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18991 78.453 NaN 121520 35 0 10099 0.261 + -1 IMVQVNIF 8 56 490.2686512029637 NaN 0 490.2689514160156 PEAK HCD FTMS 0 0 0 18985 64098.08203125 0.4650709888212517 -11 0.32757568359375 6 Oxidation (M) _IM(Oxidation (M))VQVNIF_ REV__ENST00000333421.6_1_9:74481570-74481609:-|nuORF 2.577480529830294 0.38822285293237185 1 Q 1 -1 2.4743 0 0 0.25286 0 0 458.27196929870246 389.18024622135005 847.4522155200525 0 0 0 0 0 0 0 0 0 Q 0.25286 + + 3 + NaN NaN 98171.1 NaN 15315 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18992 78.456 NaN 231500 35 0 12615 0.261 + 4696 EYPICVLM 8 66 484.2358676984582 966.4571824637164 2 484.2360534667969 MULTI HCD FTMS 0 0 0 18985 38639.5625 0.4109937622128792 -3 0.08521270751953125 7 Unmodified _EYPICVLM_ ENSG00000169594|ENST00000345382|BNC1 6.354104778181461 0.5325651638111438 1 EYPS 4 5 19.385 0 0 2.0058 0 0 0 487.23594080142817 487.23594080142817 8.037275116073344 0 0 0 0 0 0 0 0 EYPS 2.0058 - 177 + NaN NaN 112471 NaN 15316 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18993 78.459 NaN 111600 35 0 12029 0.261 -1 VHAVIIHL 8 50 472.29038369410443 NaN 0 472.290283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VHAVIIHL_ ENST00000450317.1_1_7:90261387-90261723:+|nuORF 0.7936320650641473 0.38822285293237185 1 {I|L} 1 -1 5.4846 0 0 0.58187 0 0 130.14015174397542 696.3188149454135 826.458966689389 0 0 0 0 0 0 0 0 0 {I|L} 0.58187 + + 5 + NaN NaN 96743.3 NaN 15317 3674 18985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18995 78.464 NaN 1957500 35 0 380770 0.327 + 24957 RYTFYVLEF 9 89 619.3163286234789 1236.6181043137576 2 619.31640625 MULTI HCD FTMS 0 0 0 18994 1220459 0.7791551596304267 1 -0.03290557861328125 1 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 63.227496030279354 0.01306643085373406 1 [YR]T{M(Oxidation (M))|F}YV{I|L}E{M(Oxidation (M))|F} 9 0 + 76.067 0 0 6.1512 6.1512 86.723 0 0 0 0.26802492411967194 58.107887415777526 0.26802492411967194 7.768024924119672 0 2.3494850021680094 0 0.75 0 + + [YR]T{M(Oxidation (M))|F}YV{I|L}E{M(Oxidation (M))|F};[YR]T{M(Oxidation (M))|F}YVE{I|L}{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}TYV{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][YR]YV{I|L}E{M(Oxidation (M))|F};{[QG]|[NA]}{[RE]|[WV]}PYV{I|L}E{M(Oxidation (M))|F};{[QG]|[NA]}P{[RE]|[WV]}YV{I|L}E{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}TYVE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}VEPY{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][YR]YVE{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}{[RE]|[WV]}PYVE{I|L}{M(Oxidation (M))|F} 6.1512;5.523;5.3209;5.0492;4.9621;4.7827;4.6927;4.6175;4.421;4.3339 +;-;-;-;-;-;-;-;-;- + 702 NaN NaN 393952.7 NaN 15318 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18996 78.468 NaN 2091400 35 0 359620 0.261 + 13740 KYPSPFFVF 9 90 566.297318493246 1130.580084053292 2 566.2975463867188 MULTI HCD FTMS 0 0 0 18994 1268321.25 0.014777862147681535 49 -1.3914413452148438 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 111.28704002717404 0.0027322905094575235 1 [YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 2 + 85.072 0 0 7.5246 7.5246 92.996 0 0 0 15.004311474114331 53.83771052477826 15.004311474114331 15.083559388717376 0 2.9291746928241125 0 1.055462187404089 0.9361818737241735 [YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]KY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F};[YQ][{I|L}A]{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.5246;6.1905;5.3507;5.1544;4.8846;4.5125;4.5078;4.1038;4.1038;3.8405 -;-;-;-;-;-;-;-;-;- 3229 NaN NaN 409764 NaN 15319 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18997 78.472 NaN 1093500 35 0 145380 0.261 + 8648 HFDLSVIEL 9 84 536.7873987700591 1071.560244606918 2 536.7874755859375 MULTI HCD FTMS 0 0 0 18994 322135.8125 0.5084047211596289 -1 0.02956390380859375 3 Unmodified _HFDLSVIEL_ ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45;nc|ENSG00000093009|O75419-3|CDC45 36.12702656103203 0.08312389501731911 1 {[QN]|[E{I|L}]|[KN]}VEEV{I|L}{M(Oxidation (M))|F} 8 7 48.887 0 0 4.5622 0 0 0 110.08082317777362 110.08082317777362 14.194247663943429 0 0 0 0 1.0994850021680094 1.154901959985743 1.1421590589602533 0 {[QN]|[E{I|L}]|[KN]}VEEV{I|L}{M(Oxidation (M))|F} 4.5622 - 403 NaN NaN 243638.1 NaN 15320 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18998 78.475 NaN 470070 35 0 164640 0.262 + 8727 HHGAGAFF 8 37 422.19864156822445 842.3827302032489 2 422.1987609863281 MULTI HCD FTMS 0 0 0 18994 198997.15625 0.2145665330189188 -9 0.271881103515625 4 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 16.99 0 0 2.0169 0 0 677.303825029224 0 677.303825029224 0 16.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 2.0169 + + 4 + NaN NaN 149720.2 NaN 15321 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 18999 78.479 NaN 467410 35 0 67765 0.261 + 26972 SYLLTYLSS 9 77 523.7727010481558 1045.5308491631115 2 523.772705078125 MULTI HCD FTMS 0 0 0 18994 39656.90625 0.24372586728914003 5 -0.15099334716796875 5 Unmodified _SYLLTYLSS_ ENSG00000113119|ENST00000394671|TMCO6;ENST00000505086.2_1_5:140019102-140021704:+|nuORF;ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENST00000511410.5_1_5:140021383-140021704:+|nuORF;nc|ENSG00000113119|Q96DC7-2|TMCO6 24.020572477871973 0.15282392193088168 1 T{I|L}{I|L}[MT] 5 6 24.807 0 0 2.3727 0 0 468.21882826972814 0 468.21882826972814 0 11.363781092484686 0 0 0 1.0114393726401687 0 0 0 T{I|L}{I|L}[MT] 2.3727 - 117 NaN NaN 151714.1 NaN 15322 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19000 78.482 NaN 235300 35 0 19453 0.261 + 21544 PYLHVGTELD 10 77 572.2888261124299 NaN 0 572.3068237304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _PYLHVGTELD_ REV__CDC40|p.D73Y|1|0.19|ENSG00000168438|chr6:110193209-110193209|G/T|missense_variant 15.847184025352803 0.31427456382696234 1 Q{I|L}D 3 -1 19.609 0 0 1.7162 0 0 132.02252419575967 651.3504732721311 783.3729974678909 0 0 0 0 0 0 0 0.7302046884880937 0.5 Q{I|L}D 1.7162 - 344 + NaN NaN 127411.2 NaN 15323 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19001 78.485 NaN 83418 35 0 16569 0.264 + 31219 VVPPDYAL 8 39 437.23933244578126 872.4641119583625 2 437.2396240234375 MULTI HCD FTMS 0 0 0 18994 27349.392578125 0.1413062190890826 15 -0.4258880615234375 7 Unmodified _VVPPDYAL_ REV__ENSG00000143786|ENST00000272133|CNIH3 9.347437153973935 0.5250182646323369 1 A{I|L} 2 -1 30.217 0 0 3.4634 0 0 670.3326893537125 0 670.3326893537125 0 17.11758134947864 0 0 0 0.9247425010840047 0 0 0 A{I|L} 3.4634 + + 16 NaN NaN 92693.6 NaN 15324 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19002 78.489 NaN 155690 35 0 22386 0.261 + 229 AFDLIEHYF 9 60 577.7794604697037 1153.5443680062074 2 577.7796630859375 MULTI HCD FTMS 0 0 0 18994 41519.01171875 0.12548898696097738 9 -0.25238800048828125 8 Unmodified _AFDLIEHYF_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant 52.268347100219714 0.028397529699942435 1 SC(Carbamidomethyl (C)){I|L}{I|L}D{[CP]|[EA]} 7 7 43.298 0 0 3.7535 0 0 347.18443495918126 0 347.18443495918126 0 36.3080139325913 0 0 0 1.579689690656103 0 0 0 SC(Carbamidomethyl (C)){I|L}{I|L}D{[CP]|[EA]} 3.7535 - 145 NaN NaN 98854.2 NaN 15325 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19003 78.492 NaN 139140 35 0 10436 0.261 + 4240 EVFREKSLL 9 64 560.8226711280541 1119.6307893229082 2 560.8237915039062 MULTI HCD FTMS 0 0 0 18994 23542.755859375 0.6058903793951577 1 -0.03290557861328125 9 Unmodified _EVFREKSLL_ ENSG00000053770|ENST00000261558|AP5M1 6.2057823575117 0.30397260197431997 1 D{I|L}{I|L} 3 7 19.922 0 0 1.7793 0 0 760.4292469709 0 760.4292469709 0 1.5051499783199063 0 0 0 0 0 0 0 D{I|L}{I|L} 1.7793 - 117 NaN NaN 105873.6 NaN 15326 3675 18994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19005 78.497 NaN 5694800 35 0 663240 0.327 + 6407 FPHLTVVLL 9 113 519.8211470376159 1037.6277411420317 2 519.8212280273438 MULTI HCD FTMS 0 0 0 19004 5397180 1 0 0 1 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 114.94377779790601 0.0021353177819039447 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L} 9 0 + 76.609 0 0 7.3831 7.3831 87.306 0 0 0 2.0065945054641787 12.793305611819086 2.0065945054641787 3.590219426416681 0 1.9291746928241125 0 1.416386562212267 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TVV{I|L}{I|L};[H{I|L}]P{M(Oxidation (M))|F}TVV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TV{I|L}V{I|L};[{I|L}V]VTHP{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}TVV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}{I|L}SV{I|L}{I|L};[{I|L}V]S{I|L}HP{M(Oxidation (M))|F}{I|L}{I|L};[{I|L}V]{I|L}SHP{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TV{I|L}V{I|L} 7.3831;7.037;6.4698;6.418;6.3528;6.3129;6.2619;6.139;6.0991;6.072 +;-;-;-;-;-;-;-;-;- + 4429 NaN NaN 921759.9 NaN 15327 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19006 78.501 NaN 2520000 35 0 771620 0.261 + 4905 FAIPLIEKL 9 96 522.3285503584551 1042.6425477837101 2 522.3284912109375 MULTI HCD FTMS 0 0 0 19004 1161771.375 0.22621837309192913 -7 0.20679473876953125 2 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 96.36657018975838 0.004359138328518304 1 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 80.759 0 0 7.7456 7.7456 93.202 0 0 0 62.78028723600242 8.798020757598408 8.798020757598408 14.366903183326514 0 2.9802046884880937 0 0.9604093769761874 0.2302046884880938 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}[SG]{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}T[VG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E;[VP][{M(Oxidation (M))|F}V][{I|L}V]EK{I|L} 7.7456;6.3677;5.6236;5.1498;4.6618;4.6127;1.5477 +;+;-;-;-;-;- + 527 + NaN NaN 467343 NaN 15328 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19007 78.505 NaN 813770 35 0 44358 0.261 + 30897 VQVAGKAER 9 96 479.2774935703601 956.5404342075202 2 479.2774963378906 MULTI HCD FTMS 0 0 0 19004 829266.0625 0.7767816454525315 -8 0.23900604248046875 3 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F} 1 9 10.837 0 0 1.133 0 0 791.4615442922843 0 791.4615442922843 0 0.6601677668645056 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.133 - 79 + NaN NaN 202117.5 NaN 15329 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19008 78.508 NaN 462050 35 0 22025 0.261 -1 MLLILGWI 8 93 487.79078151675463 973.5670101003093 2 487.7908020019531 MULTI HCD FTMS 0 0 0 19004 402534.71875 0.6485468014547543 -8 0.23900604248046875 4 Oxidation (M) _M(Oxidation (M))LLILGWI_ ENSG00000100191|ENST00000266086|SLC5A4 2.8892196856762586 0.5377058178582064 1 A 1 -1 5.8412 0 0 0.59998 0 0 105.07854590924167 794.4388521783811 899.5173980876228 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.59998 - 35 + NaN NaN 146311.2 NaN 15330 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19009 78.512 NaN 679540 35 0 168720 0.261 + 20065 NYIPRFWTF 9 76 622.3163957915608 1242.6182386499215 2 622.3165283203125 MULTI HCD FTMS 0 0 0 19004 332953.125 0.024241404775311698 28 -0.797607421875 5 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 75.76082778847304 0.0072241045649327805 1 [YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F} 9 2 + 49.801 0 0 4.0078 4.0078 88.816 0 0 0 22.379588853741325 5.051792077260856 5.051792077260856 31.948989107568107 0 1.7302046884880937 1.6989700043360187 0.6989700043360187 0.28872548999643577 [YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[QP]{M(Oxidation (M))|F}{I|L}YW{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[QV]|[N{I|L}]|[RA]|[KV]}Y[VP]WT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[QV]|[N{I|L}]|[RA]|[KV]}Y{[RE]|[WV]}PT{M(Oxidation (M))|F} 4.0078;1.4367;1.2688;1.1271 -;-;-;- 241 + NaN NaN 175958.6 NaN 15331 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19010 78.515 NaN 329530 35 0 40412 0.261 -1 TPQFPDMIL 9 56 539.2679517160655 1076.5213504989308 2 539.2681274414062 MULTI HCD FTMS 0 0 0 19004 138077.125 0.007386551114949497 100 -2.8659896850585938 6 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 26.268140514670165 0.13340543277302316 1 M[DN]{I|L}{I|L} 5 -1 30.295 0 0 2.8142 0 0 472.2391834943375 0 472.2391834943375 0 10.831094029212558 0 0 0 0.9247425010840047 0 0.3054621874040891 0 M[DN]{I|L}{I|L} 2.8142 - 59 NaN NaN 130033.8 NaN 15332 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19011 78.518 NaN 564560 35 0 90801 0.261 + 7417 FVPLHSFFL 9 79 553.8052552803815 1105.595957627563 2 553.8056030273438 MULTI HCD FTMS 0 0 0 19004 143187.21875 0.6694870312202638 -1 0.03290557861328125 7 Unmodified _FVPLHSFFL_ ENSG00000197702|ENST00000334956|PARVA 34.10243960390752 0.09241788333544565 1 {M(Oxidation (M))|F}V 2 7 27.223 0 0 2.4623 0 0 0 856.4363670653186 856.4363670653186 4.623081651579071 0 0 0 0 0.4247425010840047 1.154901959985743 0 0 + {M(Oxidation (M))|F}V 2.4623 + + 337 + NaN NaN 166173 NaN 15333 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19012 78.522 NaN 183270 35 0 14310 0.261 + 33382 YGLHWLHAF 9 72 572.2888261124299 NaN 0 572.3088989257812 PEAK HCD FTMS 0 0 0 19004 5588.751953125 0.3258887413510716 -3 0.08197021484375 8 Unmodified _YGLHWLHAF_ REV__RFC2|p.L282F|1|0.36|ENSG00000049541|chr7:74235642-74235642|G/A|missense_variant 20.871210003555333 0.18155047927120396 1 PY[RP]{M(Oxidation (M))|F}T 6 -1 18.281 0 0 1.6 0 0 149.06548123857448 229.09816919498283 378.16365043355734 0 0 0 0 0 1.0356668758921828 0 0 0.3054621874040891 PY[RP]{M(Oxidation (M))|F}T 1.6 - 275 + NaN NaN 112788.7 NaN 15334 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19013 78.525 NaN 521520 35 0 79612 0.261 + 15518 LPDPFTPNL 9 71 507.2688558830538 1012.5231588329076 2 507.2687072753906 MULTI HCD FTMS 0 0 0 19004 145278.90625 0.34613783536692283 -7 0.20679473876953125 9 Unmodified _LPDPFTPNL_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 47.748688679222035 0.03472022231463587 1 TPN{I|L} 4 5 56.74 0 0 5.6038 0 0 569.2852533470863 0 569.2852533470863 0 42.76084705832169 0 0 0 1.3807196863200843 0 0.75 0.3494850021680094 + TPN{I|L} 5.6038 + + 111 NaN NaN 157751.4 NaN 15335 3676 19004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19015 78.53 NaN 1664700 35 0 837370 0.327 + 465 ALPYFWEHF 9 74 605.2901000226736 1208.5656471121472 2 605.290283203125 MULTI HCD FTMS 0 0 0 19014 796558.9375 0.8584424436857218 1 -0.02286529541015625 1 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 49.55428908609986 0.03219431099695407 1 [{I|L}A]PY{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F} 9 0 + 62.77 0 0 5.1937 5.1937 87.506 0 0 0 32.85834632261938 9.889917747712644 9.889917747712644 9.771212547196626 0 2.309894379144197 0 0.3807196863200844 0 + + [{I|L}A]PY{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F};[{I|L}A]P{M(Oxidation (M))|F}YWEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L}WEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}[KA]{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[KQ]EH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[KQ]W{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}A];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}{[VA]|[{I|L}G]}QQ;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GG[KQ]EH{M(Oxidation (M))|F} 5.1937;4.3852;3.429;3.3299;2.9854;2.7989;2.2395;2.1811;2.0778;2.037 +;-;-;-;-;-;-;-;-;- + 978 + NaN NaN 328995.2 NaN 15336 3677 19014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19016 78.534 NaN 537720 35 0 107910 0.262 + 26954 SYLITSVEL 9 68 512.7818348522122 1023.5491167712245 2 512.7820434570312 MULTI HCD FTMS 0 0 0 19014 101937.953125 0.11325883953189517 6 -0.16710662841796875 2 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 85.64151623876279 0.004640175941193596 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 9 0 + 57.353 0 0 5.6033 5.6033 91.88 0 0 0 5.061216379505069 11.285102050630314 5.061216379505069 44.922750325201406 0 2.3169015600442577 0 0.9604093769761876 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[{I|L}A][MT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[{I|L}A]{I|L}[MT] 5.6033;1.2144;0.10838 +;-;- + 520 NaN NaN 158428.1 NaN 15337 3677 19014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19017 78.538 NaN 243920 35 0 31504 0.261 + 32264 VYTVVDEMFL 10 73 616.3001103953502 1230.5856678575003 2 616.2992553710938 MULTI HCD FTMS 0 0 0 19014 95165.6875 0.026168803719784774 29 -0.8273391723632812 3 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 85.64151623876279 0.0013369395341731622 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 96.636 0 0 7.8528 7.8528 88.177 0 0 0 17.894680962404124 73.95995990903963 17.894680962404124 3.979400086720375 0 2.6549471895720984 1.3010299956639813 1.274227503252014 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DV{I|L}A{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DVVTM{I|L};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DV{I|L}SM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}][PA]V{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}][PA]V{[{M(Oxidation (M))|F}D]|MM}YM{I|L} 7.8528;7.5295;5.8695;5.6466;5.5461;4.4924;4.3919;3.5907;3.2673 -;-;-;-;-;+;-;-;- + 607 NaN NaN 122070.2 NaN 15338 3677 19014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19018 78.541 NaN 309530 35 0 64008 0.263 + 18418 MPTIQITAL 9 40 494.2807141671845 986.546875401169 2 494.2806701660156 MULTI HCD FTMS 0 0 0 19014 136175.078125 0.5070434621730621 -2 0.0657501220703125 4 Unmodified _MPTIQITAL_ ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF 28.494509381512117 0.11816142465008336 1 Q{I|L}TA{I|L} 5 4 59.068 0 0 5.9874 0 0 442.2256031720719 0 442.2256031720719 0 48.61046901591578 0 0 0 1.9247425010840047 0 0.4247425010840047 0 + Q{I|L}TA{I|L} 5.9874 + + 88 NaN NaN 127753.7 NaN 15339 3677 19014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19019 78.544 NaN 208390 35 0 52338 0.261 + 14778 LIELFFHLD 9 42 573.8132591015233 1145.6119652698465 2 573.81298828125 MULTI HCD FTMS 0 0 0 19014 84028.4765625 1 0 0 5 Unmodified _LIELFFHLD_ ENST00000508281.2_1_5:137219022-137219178:-|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}{I|L}Y 3 7 30.942 0 0 2.7009 0 0 0 753.360627949787 753.360627949787 23.95242492728684 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}{I|L}Y 2.7009 - 13 NaN NaN 129645.7 NaN 15340 3677 19014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19020 78.548 NaN 363280 35 0 54705 0.261 + 25388 SEIELFRVF 9 86 570.3081666651008 1138.6017803970014 2 570.3084716796875 MULTI HCD FTMS 0 0 0 19014 25157.033203125 0.062016966427833026 9 -0.23541259765625 6 Unmodified _SEIELFRVF_ ENSG00000144028|ENST00000323853|SNRNP200 14.405379775768559 0.2358970535022398 1 [YN]{I|L}[RD]{M(Oxidation (M))|F}{I|L}S 8 7 41.177 0 0 3.6165 0 0 0 127.06379146561393 127.06379146561393 17.36494082808356 0 0 0 0 0 1.6989700043360187 0.3252574989159953 0.3054621874040891 [YN]{I|L}[RD]{M(Oxidation (M))|F}{I|L}S 3.6165 - 276 NaN NaN 138457.7 NaN 15341 3677 19014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19022 78.553 NaN 1427600 35 0 179020 0.327 + 13432 KYPENFFLL 9 106 585.8132425088911 1169.6119320845821 2 585.8134765625 MULTI HCD FTMS 0 0 0 19021 1076931.5 0.005431948039633045 111 -3.177825927734375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 93.349 0 0 7.9812 7.9812 90.169 0 0 0 8.182503180159358 16.478174818886387 8.182503180159358 8.182503180159358 0 2.5669015600442577 0 0.23965182871044374 2.0669015600442577 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.9812;7.2816;7.1939;6.8152;6.4943;6.2162;6.1156;6.0279;6.0005;5.9588 +;-;-;-;-;-;-;-;-;- + 3654 NaN NaN 313658.8 NaN 15342 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19023 78.557 NaN 2684200 35 0 220580 0.261 + 24445 RYLDLFTSF 9 98 581.3004901821857 1160.5864274311714 2 581.3013305664062 MULTI HCD FTMS 0 0 0 19021 1213882 0.13615373183295432 -5 0.1376800537109375 2 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 114.20165948288297 0.0022564706844261533 1 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 88.599 0 0 7.634 7.634 88.321 0 0 0 2.632192780232785 4.987737688117235 2.632192780232785 4.987737688117235 0 2.8494850021680094 0 1.9291746928241125 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[Y{I|L}]RD{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};VE[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};VE{I|L}[YR]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{I|L}DVVS{M(Oxidation (M))|F};[Y{I|L}]RDYVVS{M(Oxidation (M))|F};[Y{I|L}]RYDVVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{I|L}D[TA]{I|L}{M(Oxidation (M))|F} 7.634;7.2042;6.7503;6.6922;5.8272;5.4195;5.2777;4.4676;4.1395;4.033 +;-;-;-;-;-;-;-;-;- + 2612 + NaN NaN 498737.4 NaN 15343 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19024 78.561 NaN 528330 35 0 55704 0.261 + 15539 LPDPRELIEI 10 83 597.8400638520732 1193.6655747709463 2 597.8403930664062 MULTI HCD FTMS 0 0 0 19021 207772.953125 0.3282288961965396 -6 0.1771697998046875 3 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 47.7319792270244 0.08603782309361356 1 {[QN]|[E{I|L}]|[KN]}[RP]{I|L}EDP{I|L}{I|L} 10 6 + 51.578 0 0 4.321 4.321 81.87 0 0 0 3.5353127608303936 22.36494082808356 3.5353127608303936 3.4568378181977977 0 0 1.3979400086720375 0.5994850021680094 0 {[QN]|[E{I|L}]|[KN]}[RP]{I|L}EDP{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}E[VP]E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}[DP]{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[RP][DP]{I|L}{I|L}E{I|L};[DP]{I|L}N{I|L}[KG]DP{I|L}{I|L};[{I|L}P]DN{I|L}[KG]DP{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}E{I|L}[DP]{I|L};[VP]EN{I|L}[KG]DP{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}[DP]E{I|L}{I|L};[DP]{I|L}N{I|L}[KG][VP]E{I|L} 4.321;4.0314;3.7792;3.527;3.4464;3.432;3.3592;3.2989;3.2545;3.1568 -;-;-;-;-;-;-;-;-;- 1439 NaN NaN 180055.6 NaN 15344 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19025 78.564 NaN 997040 35 0 133980 0.261 + 20181 NYLDRFLSL 9 98 570.8060184248639 1139.5974839165276 2 570.8062744140625 MULTI HCD FTMS 0 0 0 19021 273522.0625 0.008026332419236667 -5 0.1376800537109375 4 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 124.953037156858 0.0009110518730163033 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 109.33 0 0 9.594 9.594 88.91 0 0 0 0.6508958705045842 0.6508958705045842 0.6508958705045842 0.6508958705045842 0 2.8494850021680094 1.6989700043360187 0.25 1.372363747448347 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DRS{M(Oxidation (M))|F}{I|L}{I|L};NY{I|L}DRS{I|L}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}D[VG]KKG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]S{I|L};NY{I|L}D[{I|L}T]RV{M(Oxidation (M))|F} 9.594;9.5369;8.1267;7.0746;6.5468;5.7869;5.5757;5.5316;5.1951;5.0674 +;+;-;-;-;-;-;-;-;- + 1831 NaN NaN 242328.2 NaN 15345 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19026 78.567 NaN 232630 35 0 22944 0.261 + 35603 YYIFIPSKF 9 66 589.3188011551375 NaN 0 589.3180541992188 PEAK HCD FTMS 0 0 0 19021 93550.5546875 0.3803523981682563 44 -1.2469711303710938 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 {I|L} 1 8 16.237 0 0 1.38 0 0 326.1268216017534 734.3897007963628 1060.5165223981162 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.38 + + 40 + NaN NaN 119352.2 NaN 15346 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19027 78.571 NaN 81688 35 0 10840 0.261 + -1 GMKRRLHF 8 47 530.7948925445991 1059.575232155998 2 530.7950439453125 MULTI HCD FTMS 0 0 0 19021 19124.978515625 0.3426035717442145 3 -0.085296630859375 6 Oxidation (M) _GM(Oxidation (M))KRRLHF_ REV__ENSG00000109158|ENST00000264318|GABRA4 6.354104778181461 0.5325651638111438 1 {I|L}H{M(Oxidation (M))|F} 3 -1 19.922 0 0 1.8801 0 0 644.3526502241606 0 644.3526502241606 0 14.436974992327126 0 0 0 0 0 0 0 {I|L}H{M(Oxidation (M))|F} 1.8801 + + 64 + NaN NaN 92523.9 NaN 15347 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19028 78.574 NaN 150280 35 0 13695 0.261 -1 FADALEVIPM 10 62 561.2814391817922 NaN 0 561.2811889648438 PEAK HCD FTMS 0 0 0 19021 33530.23828125 0.7283679271868053 -3 0.08861541748046875 7 Oxidation (M) _FADALEVIPM(Oxidation (M))_ ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5 24.020572477871973 0.24806657497419846 1 EV{I|L} 3 -1 29.922 0 0 2.6703 0 0 517.2551258227655 259.0756014459594 776.330727268725 0 0 0 0 0 1.8494850021680094 0 0 0 EV{I|L} 2.6703 + + 94 + NaN NaN 106707.9 NaN 15348 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19029 78.577 NaN 141360 35 0 21473 0.261 + 35374 YYDEIINAL 9 52 557.2766573685576 1112.5387618039151 2 557.2771606445312 MULTI HCD FTMS 0 0 0 19021 44563.57421875 0.9430195339539191 -1 0.02286529541015625 8 Unmodified _YYDEIINAL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 22.736283301280096 0.1639198954644489 1 {I|L}NA{I|L} 4 5 38.928 0 0 3.499 0 0 683.2801345974437 0 683.2801345974437 0 24.323806533759438 0 0 0 1 0 0 0 + {I|L}NA{I|L} 3.499 + + 21 NaN NaN 98355.6 NaN 15349 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19030 78.581 NaN 133040 35 0 18712 0.262 + 32608 WLGILLCL 8 56 465.77750548458 929.54045803596 2 465.777587890625 MULTI HCD FTMS 0 0 0 19021 27613.62890625 0.09937289729652893 29 -0.8372726440429688 9 Unmodified _WLGILLCL_ ENSG00000205339|ENST00000379719|IPO7 2.8892196856762586 0.5377058178582064 1 {NN|[MP]|[D{I|L}]|[EV]}N[DN]{I|L}N 7 6 15.775 0 0 1.697 0 0 0 128.16708708522586 128.16708708522586 1.1704601275868498 0 0 0 0 0 0 0 0.3054621874040891 {NN|[MP]|[D{I|L}]|[EV]}N[DN]{I|L}N 1.697 - 54 NaN NaN 101102.7 NaN 15350 3678 19021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19032 78.586 NaN 1349900 35 0 118930 0.327 + 29721 VDISKKSWLF 10 102 611.8449697751321 1221.675386617064 2 612.3323974609375 MULTI HCD FTMS 0 0 0 19031 53037.42578125 1 0 0 1 Unmodified _VDISKKSWLF_ tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1 22.736283301280096 0.29844449404982915 1 [YQ]T[RP]{I|L}W{I|L} 8 8 40.992 0 0 3.3554 0 0 0 161.07989444246655 161.07989444246655 24.828249072344022 0 0 0 0 0 0 1.4361818737241734 0.75 [YQ]T[RP]{I|L}W{I|L} 3.3554 - 656 NaN NaN 283488.4 NaN 15351 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19033 78.59 NaN 853010 35 0 60160 0.261 + 34567 YPLLLKEIL 9 78 551.3496997816405 1100.684846630081 2 551.3497924804688 MULTI HCD FTMS 0 0 0 19031 670343.0625 0.7321421269844499 3 -0.08202362060546875 2 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 92.65332237495696 0.004456439685314431 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 9 0 + 79.715 0 0 7.2423 7.2423 88.392 0 0 0 8.433429542953249 8.433429542953249 8.433429542953249 6.716838869797513 0 2.305462187404089 1.6989700043360187 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}[K{I|L}]E{I|L};YP[K{I|L}]{I|L}{I|L}{I|L}E{I|L};[{I|L}P]Y{I|L}{I|L}[K{I|L}]E{I|L};[{I|L}P]Y{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[Y{I|L}]P{I|L}{I|L}[K{I|L}]E{I|L};[Y{I|L}]P{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}[K{I|L}]E{I|L};[{I|L}P]{I|L}Y{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 7.2423;6.6321;6.4761;6.0036;5.9676;5.5341;5.482;5.4461;5.1158;5.0798 +;-;-;-;-;-;-;-;-;- + 525 NaN NaN 206568.7 NaN 15352 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19034 78.594 NaN 513960 35 0 95470 0.261 + 27441 SYVQTLVYI 9 61 543.2975432343852 1084.5805335355703 2 543.2975463867188 MULTI HCD FTMS 0 0 0 19031 253668.34375 0.5815729476368573 -3 0.0885467529296875 3 Unmodified _SYVQTLVYI_ ENSG00000204267|ENST00000374897|TAP2;nc|ENSG00000204267|Q03519-2|TAP2 79.59630418116434 0.005983006570063981 1 [YV]SQT{I|L}VY{I|L} 9 2 + 98.565 0 0 9.0879 9.0879 93.073 0 0 0 14.461499616092652 85.07048726916153 14.461499616092652 9.208187539523749 0 2.2614393726401687 1.2218487496163564 1.5138793319624577 0 [YV]SQT{I|L}VY{I|L};[YV]S[AG]T{I|L}VY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VQT{I|L}VY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V[AG]T{I|L}VY{I|L} 9.0879;8.2389;7.6838;6.8347 -;-;+;- + 536 NaN NaN 167387.2 NaN 15353 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19035 78.597 NaN 296970 35 0 13157 0.261 + 3587 EKIQKNKN 8 72 501.29058431079056 1000.5666156883811 2 501.2904968261719 MULTI HCD FTMS 0 0 0 19031 204842.984375 0.36009962079253194 -8 0.23622894287109375 4 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 4.3292370932331545 0.5355693454741696 1 Q 1 7 5.5065 0 0 0.55034 0 0 590.3498320963874 279.1444491022094 869.4942811985968 0 0 0 0 0 0.4247425010840047 0 0 0 + Q 0.55034 + + 69 + NaN NaN 119765.6 NaN 15354 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19036 78.6 NaN 350570 35 0 30677 0.261 + 19769 NYAWVYYHL 9 67 614.7929789950731 1227.571405056946 2 614.7928466796875 MULTI HCD FTMS 0 0 0 19031 100825.3203125 0.37818466662032757 55 -1.5741500854492188 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 1 [YN]AWVYYH{I|L} 9 0 + 107.76 0 0 8.7785 8.7785 97.396 0 0 0 25.929614462122487 16.478174818886373 16.478174818886373 47.8357551167653 0 2.774227503252014 1.6989700043360187 0 1.4436726795685342 + + [YN]AWVYYH{I|L};[YN]AWV[{M(Oxidation (M))|F}V]R{[CA]|SS};[YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YH{I|L} 8.7785;4.8817;4.4622 +;-;- + 283 NaN NaN 135392.9 NaN 15355 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19037 78.604 NaN 185320 35 0 14055 0.261 + 22972 QYVYWLHML 9 62 626.8128134706941 1251.611074008188 2 626.8130493164062 MULTI HCD FTMS 0 0 0 19031 76982.9609375 0.367836061407577 4 -0.1114044189453125 6 Unmodified _QYVYWLHML_ ENSG00000135926|ENST00000258412|TMBIM1 42.96799951952854 0.0517199967865474 1 [YQ]VYW{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 9 0 + 57.91 0 0 4.6268 4.6268 89.639 0 0 0 46.9408341705779 7.147642715192504 7.147642715192504 31.76599703664159 0 0.3807196863200844 1.5228787452803376 0 0 + + [YQ]VYW{I|L}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]H{I|L}W{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV] 4.6268;2.0888 +;- + 193 + NaN NaN 114696.5 NaN 15356 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19038 78.607 NaN 174560 35 0 9399.3 0.262 -1 0 74 509.8037789060589 1017.5930048789178 2 509.8039855957031 MULTI HCD FTMS 0 0 0 19031 120990.1875 0.33587684673508517 -6 0.1705169677734375 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2872 0 0 852.5145269509866 0 852.5145269509866 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2872 - 37 + NaN NaN 121054.4 NaN 15357 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19039 78.61 NaN 233290 35 0 121650 0.261 -1 KMKVLFLP 8 37 496.3038712465691 990.5931895599382 2 496.3042907714844 MULTI HCD FTMS 0 0 0 19031 43790.3125 0.1394866639126821 -6 0.1705169677734375 8 Oxidation (M) _KM(Oxidation (M))KVLFLP_ ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116981.5 NaN 15358 3679 19031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19041 78.615 NaN 1729800 35 0 319490 0.327 + 13741 KYPSPFFVF 9 84 566.297318493246 1130.580084053292 2 566.297607421875 MULTI HCD FTMS 0 0 0 19040 1068576.5 0.01245053349949945 54 -1.5446090698242188 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 99.79894945604345 0.0042691968066200965 1 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 82.712 0 0 7.3159 7.3159 93.888 0 0 0 15.118705200516018 53.640946237645295 15.118705200516018 24.69273760456403 0 2.7302046884880937 0 0.7059771852360797 0.9476212463643423 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS][YK]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][PS]{M(Oxidation (M))|F}AA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][NP][YV]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.3159;5.1318;4.7098;4.4096;4.2991;4.0114;3.9876;3.8016;2.8567;2.7247 +;-;-;-;-;-;-;-;-;- + 1429 NaN NaN 346008.8 NaN 15359 3680 19040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19042 78.619 NaN 1491700 35 0 211840 0.261 + 8649 HFDLSVIEL 9 80 536.7873987700591 1071.560244606918 2 536.7874755859375 MULTI HCD FTMS 0 0 0 19040 450055.625 0.7102917330386777 4 -0.1013946533203125 2 Unmodified _HFDLSVIEL_ ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45;nc|ENSG00000093009|O75419-3|CDC45 68.08070601005525 0.009709267492204555 1 SV{I|L}E{I|L} 5 4 60.292 0 0 5.6265 0 0 512.23735243965 0 512.23735243965 0 31.875306316958497 0 0 0 1.4802046884880937 0 0.9916440611282626 0 + SV{I|L}E{I|L} 5.6265 + + 617 NaN NaN 309851.3 NaN 15360 3680 19040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19043 78.623 NaN 667540 35 0 129760 0.261 + 24958 RYTFYVLEF 9 71 619.3163286234789 1236.6181043137576 2 619.31640625 MULTI HCD FTMS 0 0 0 19040 319331.09375 0.20386466839585762 6 -0.15016937255859375 3 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 40.23920728925047 0.06424668180817725 1 YV{I|L}E{M(Oxidation (M))|F} 5 4 61.454 0 0 4.9695 0 0 567.2809315412125 0 567.2809315412125 0 52.501225267834 0 0 0 1.9247425010840047 0 0.4247425010840047 0 + YV{I|L}E{M(Oxidation (M))|F} 4.9695 + + 219 NaN NaN 180624.2 NaN 15361 3680 19040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19044 78.626 NaN 906900 35 0 360910 0.264 + 8728 HHGAGAFF 8 31 422.19864156822445 842.3827302032489 2 422.1988220214844 MULTI HCD FTMS 0 0 0 19040 391231.875 0.42184154089006487 -4 0.1180877685546875 4 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3035656298099 0 677.3035656298099 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 1 + NaN NaN 215140.3 NaN 15362 3680 19040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19045 78.63 NaN 177220 35 0 32726 0.261 + 16399 LSIFYLCVFV 10 38 602.3269543850603 NaN 0 602.3132934570312 PEAK HCD FTMS 0 0 0 19040 22938.95703125 1 0 0 5 Unmodified _LSIFYLCVFV_ REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|2 4.3292370932331545 0.3364790620948225 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L}G 6 -1 10.891 0 0 0.90556 0 0 165.10356236294712 406.17722498111567 571.2807873440628 0 0 0 0 0 0 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L}G 0.90556 - 25 + NaN NaN 110424.6 NaN 15363 3680 19040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19046 78.633 NaN 291640 35 0 77587 0.261 + 21631 PYPQYLAVI 9 52 532.2950218025961 1062.5754906719922 2 532.2947998046875 MULTI HCD FTMS 0 0 0 19040 97003.890625 0.36806466342702127 -4 0.1180877685546875 6 Unmodified _PYPQYLAVI_ ENSG00000063322|ENST00000315588|MED29 34.10243960390752 0.09241788333544565 1 {[VA]|[{I|L}G]}[WE]Y{I|L}AV{I|L} 9 4 + 67.369 0 0 6.3401 6.3401 93.783 0 0 0 14.40999983289359 52.764706236572465 14.40999983289359 67.36880000633434 0 1.8494850021680094 1.3979400086720375 0 0 {[VA]|[{I|L}G]}[WE]Y{I|L}AV{I|L} 6.3401 - 46 NaN NaN 129859.5 NaN 15364 3680 19040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19048 78.638 NaN 4821200 35 0 1634000 0.327 + 4906 FAIPLIEKL 9 84 522.3285503584551 1042.6425477837101 2 522.3286743164062 MULTI HCD FTMS 0 0 0 19047 2219895.25 0.4322546610252824 -2 0.052459716796875 1 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 106.94017166704063 0.003441928997083001 1 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 90.473 0 0 8.6773 8.6773 89.527 0 0 0 59.66113029490927 8.741436528314566 8.741436528314566 4.018637558036673 0 3.1549471895720984 0 1.110924374808178 0.2742275032520141 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{M(Oxidation (M))|F}A{I|L}{I|L}P{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}T[VG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E;{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}T{I|L}[VG];{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}P{I|L}K{I|L} 8.6773;8.2918;7.5054;6.4484;6.1597;5.723;5.2654;5.1027;4.9767;4.5196 +;-;+;-;-;-;-;-;-;- + 671 + NaN NaN 807949.8 NaN 15365 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19049 78.642 NaN 2255400 35 0 235480 0.261 + 6408 FPHLTVVLL 9 93 519.8211470376159 1037.6277411420317 2 519.8213500976562 MULTI HCD FTMS 0 0 0 19047 651448 0.12070155155099514 5 -0.12725067138671875 2 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 101.72198241140316 0.004218805956062179 1 {I|L}TVV{I|L}{I|L} 6 3 66.706 0 0 6.4287 0 0 381.1795826642594 0 381.1795826642594 0 14.829474340178024 0 0 0 1.7856668758921828 0 1.4604093769761874 0 + {I|L}TVV{I|L}{I|L} 6.4287 + + 1238 NaN NaN 439475.7 NaN 15366 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19050 78.646 NaN 766620 35 0 40366 0.261 + 30898 VQVAGKAER 9 90 479.2774935703601 956.5404342075202 2 479.2774658203125 MULTI HCD FTMS 0 0 0 19047 762368.75 0.7141182774094167 -3 0.085296630859375 3 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 1 Q 1 8 10.485 0 0 1.0961 0 0 458.2727700498034 367.1971294498418 825.4698994996452 0 0 0 0 0 0.5 0 0 0 + Q 1.0961 + + 36 + NaN NaN 198617.4 NaN 15367 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19051 78.649 NaN 544500 35 0 38050 0.261 + 5432 FIALCLSNV 9 86 490.2686512029637 NaN 0 490.2688293457031 PEAK HCD FTMS 0 0 0 19047 45318.0078125 0.3288100054927271 -4 0.10816192626953125 4 Unmodified _FIALCLSNV_ ENSG00000177990|ENST00000324472|DPY19L2;ENST00000414296.2_1_7:29736649-29749689:+|nuORF;nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;nc|ENSG00000291139|Q6ZN68|DPY19L2P2 19.438996006549623 0.19116380746473294 1 {I|L}TWS{I|L} 5 7 18.562 0 0 1.8969 0 0 148.0934459099969 227.08236108951408 375.175806999511 0 0 0 0 0 0 0 0.7302046884880937 0 {I|L}TWS{I|L} 1.8969 - 417 + NaN NaN 166031 NaN 15368 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19052 78.653 NaN 215080 35 0 37762 0.261 + 194 AETTTLFQF 9 59 529.263559031064 1056.512565128928 2 529.263427734375 MULTI HCD FTMS 0 0 0 19047 71261.84375 0.838691685560911 -2 0.052459716796875 5 Unmodified _AETTTLFQF_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 47.748688679222035 0.03472022231463587 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 8 5 + 51.419 0 0 4.8669 4.8669 86.778 0 0 0 13.952424927286842 42.467072242602484 13.952424927286842 9.262137858390815 0 1.305462187404089 0 1.1989700043360187 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))K]{[TV]|[{I|L}S]}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KC]G{[TV]|[{I|L}S]}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VS]T{[TV]|[{I|L}S]}Q{M(Oxidation (M))|F} 4.8669;3.9902;1.9331;1.7464;1.4066 -;-;-;-;- 238 NaN NaN 110949 NaN 15369 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19053 78.656 NaN 318960 35 0 42364 0.261 + -1 NFMIYEPDQ 9 69 607.7563741696954 1213.4981954061907 2 607.7564697265625 MULTI HCD FTMS 0 0 0 19047 41887.04296875 0.3433685206224455 -2 0.052459716796875 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))NFM(Oxidation (M))IYEPDQ_ REV__CLCN4|p.S756Y|1|0.07|ENSG00000073464|chrX:10233568-10233568|C/A|missense_variant 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.32793 0 0 62.035806391322986 1001.3678210505469 1063.40362744187 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.32793 + + 34 + NaN NaN 126013.1 NaN 15370 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19054 78.659 NaN 72861 35 0 3910.9 0.264 + 31237 VVQVQRAN 8 54 457.2642199679544 912.5138870027088 2 457.2643127441406 MULTI HCD FTMS 0 0 0 19047 50856.57421875 0.07070650068138318 88 -2.5249252319335938 7 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 2.302733041254933 0.5385759549224092 1 W 1 8 11.99 0 0 1.3139 0 0 708.4243159351291 0 708.4243159351291 0 -1.9897000433601875 -1.9897000433601875 0 0 0 0 0 0 W 1.3139 - 32 + NaN NaN 90977.7 NaN 15371 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19055 78.663 NaN 278870 35 0 19186 0.261 + 5506 FLAICLAVF 9 80 498.7815238308788 NaN 0 498.78155517578125 PEAK HCD FTMS 0 0 0 19047 17875.80859375 0.1253573454109234 -3 0.085296630859375 8 Unmodified _FLAICLAVF_ REV__ENST00000576442.1_3_19:30462035-30462077:+|nuORF 14.581692164780916 0.22376707489839515 1 {M(Oxidation (M))|F}TS 3 -1 16.414 0 0 1.6488 0 0 113.13305775555087 544.2518404596311 657.384898215182 0 0 0 0 0 0 0 0.7742275032520141 0 {M(Oxidation (M))|F}TS 1.6488 - 200 + NaN NaN 138856.5 NaN 15372 3681 19047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19057 78.667 NaN 469300 35 0 24149 0.327 + 12209 KKSQKREA 8 86 487.79078151675463 973.5670101003093 2 487.7906799316406 MULTI HCD FTMS 0 0 0 19056 422490.6875 0.6806990087051843 -2 0.05248260498046875 1 Unmodified _KKSQKREA_ ENSG00000071537|ENST00000336735|SEL1L;ENST00000554744.1_1_14:81964730-81972475:-|nuORF;nc|ENSG00000071537|Q9UBV2-2|SEL1L 1.844237919475145 0.5392561982033289 1 A 1 7 6.2371 0 0 0.64065 0 0 105.07896106632207 794.4376314752561 899.5165925415782 0 0 0 0 0 0.4247425010840047 0 0 0 + A 0.64065 + + 64 + NaN NaN 170590.6 NaN 15373 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19058 78.672 NaN 748690 35 0 129510 0.261 + 15519 LPDPFTPNL 9 69 507.2688558830538 1012.5231588329076 2 507.26885986328125 MULTI HCD FTMS 0 0 0 19056 314872.375 0.7502069303288273 -1 0.02956390380859375 2 Unmodified _LPDPFTPNL_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 60.07390631473393 0.0174780869009295 1 TPN{I|L} 4 5 51.274 0 0 5.064 0 0 569.2850185123359 0 569.2850185123359 0 35.42796583575644 0 0 0 1.3807196863200843 0 0.7742275032520141 0.3807196863200844 + TPN{I|L} 5.064 + + 187 NaN NaN 187978.3 NaN 15374 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19059 78.675 NaN 672730 35 0 326670 0.261 + 466 ALPYFWEHF 9 57 605.2901000226736 1208.5656471121472 2 605.2901611328125 MULTI HCD FTMS 0 0 0 19056 285429.90625 0.3076045408406914 6 -0.16332244873046875 3 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 43.77239144664712 0.04802738721622131 1 [{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 47.941 0 0 3.9667 3.9667 88.588 0 0 0 29.268630947058366 5.6424927368725974 5.6424927368725974 29.240247145042062 0 1.4802046884880937 0 0.3807196863200844 0 + + [{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]};[{I|L}A][C(Carbamidomethyl (C))S]W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}A];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}A] 3.9667;1.5473;0.63546 +;-;- + 144 + NaN NaN 186958.5 NaN 15375 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19060 78.679 NaN 467560 35 0 121460 0.261 + 20066 NYIPRFWTF 9 76 622.3163957915608 1242.6182386499215 2 622.3165893554688 MULTI HCD FTMS 0 0 0 19056 264386.25 0.01924923847246291 34 -0.9680862426757812 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 51.629811660486645 0.02929079705179888 1 [YN]{I|L}[DV]{M(Oxidation (M))|F}QPT 9 5 58.98 0 0 4.7464 0 0 0 162.05451372578332 162.05451372578332 45.25630310294048 0 0 0 0 1.3807196863200843 1.6989700043360187 0.3807196863200844 0.9559771852360797 [YN]{I|L}[DV]{M(Oxidation (M))|F}QPT 4.7464 - 566 NaN NaN 158534.8 NaN 15376 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19061 78.682 NaN 291520 35 0 42910 0.261 + 22068 QHFQQYLL 8 52 538.7792252746052 1075.5438976160103 2 539.2683715820312 MULTI HCD FTMS 0 0 0 19056 51749.60546875 0.6441457846054985 -2 0.05248260498046875 5 Unmodified _QHFQQYLL_ ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;nc|ENSG00000141431|Q9C0F0-2|ASXL3 13.50788311687929 0.4944073034352369 1 Y{I|L}{I|L} 3 5 29.425 0 0 2.7358 0 0 668.3024488845806 0 668.3024488845806 0 22.43501263708417 0 0 0 0.9247425010840047 0 0 0 + Y{I|L}{I|L} 2.7358 + + 19 NaN NaN 123625.2 NaN 15377 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19062 78.685 NaN 275780 35 0 49854 0.261 + 7418 FVPLHSFFL 9 53 553.8052552803815 1105.595957627563 2 553.8052978515625 MULTI HCD FTMS 0 0 0 19056 132959.6875 0.6216671238776262 5 -0.1338958740234375 6 Unmodified _FVPLHSFFL_ ENSG00000197702|ENST00000334956|PARVA 21.74664581756881 0.17247014374749275 1 D{I|L} 2 8 25.217 0 0 2.2808 0 0 859.4593764520115 0 859.4593764520115 0 16.479400086720375 0 0 0 0.4247425010840047 0 0 0 D{I|L} 2.2808 - 54 NaN NaN 134553.1 NaN 15378 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19063 78.689 NaN 389710 35 0 39923 0.261 + 230 AFDLIEHYF 9 80 577.7805637940112 NaN 0 577.795654296875 PEAK HCD FTMS 0 0 0 19056 14630.630859375 0.8365154583569937 1 -0.02938079833984375 7 Unmodified _AFDLIEHYF_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant 10.073929032068715 0.24642998803896465 1 {I|L}DR 3 8 20.49 0 0 1.7762 0 0 291.05492936371553 475.2580660455688 766.3129954092843 0 0 0 0 0 0 0 0.7302046884880937 0 {I|L}DR 1.7762 - 81 + NaN NaN 135157.8 NaN 15379 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19064 78.692 NaN 294690 35 0 36016 0.262 + 30757 VPMEDINL 8 50 465.7336810963631 929.4528092595262 2 465.7336120605469 MULTI HCD FTMS 0 0 0 19056 162223.546875 0.32805081395398805 -2 0.05248260498046875 8 Unmodified _VPMEDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 28.486842064014134 0.3788298654084067 1 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L} 8 2 + 50.679 0 0 5.4526 5.4526 87.765 0 0 0 11.42667503568731 26.677960378879515 11.42667503568731 9.262137858390815 0 0.8807196863200843 1.2218487496163564 0 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}GG{I|L} 5.4526;4.4561 -;- 56 NaN NaN 131220.6 NaN 15380 3682 19056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19066 78.697 NaN 9003100 35 0 768880 0.327 + 24446 RYLDLFTSF 9 94 581.3004901821857 1160.5864274311714 2 581.30078125 MULTI HCD FTMS 0 0 0 19065 8915525 1 0 0 1 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 121.5340881639634 0.001118397630175091 1 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 96.775 0 0 8.3385 8.3385 94.024 0 0 0 3.65279269351241 7.35863111416478 3.65279269351241 13.621506059964545 0 3.1747425010840047 0 1.9163865622122673 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[Y{I|L}]RD{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{I|L}DVVS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[YR]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YR]{I|L}DYVVS{M(Oxidation (M))|F};[YR]{I|L}YDVVS{M(Oxidation (M))|F};[Y{I|L}]RDYVVS{M(Oxidation (M))|F} 8.3385;7.1648;6.9933;5.97;5.4195;5.2951;4.9787;4.6667;4.3386;4.127 +;-;-;-;-;-;-;-;-;- + 2981 + NaN NaN 744049.4 NaN 15381 3683 19065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19067 78.701 NaN 1486800 35 0 187290 0.261 + 13433 KYPENFFLL 9 100 585.8132425088911 1169.6119320845821 2 585.8130493164062 MULTI HCD FTMS 0 0 0 19065 1208106.625 0.006093583866138602 116 -3.3226699829101562 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 96.36657018975838 0.004359138328518304 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 82.596 0 0 7.0618 7.0618 89.893 0 0 0 8.341343854504757 49.20220509092588 8.341343854504757 9.208187539523749 0 2.4291746928241125 0 0.2742275032520141 1.6688265215345564 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]N[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]GG[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]N[EP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]NG{[MG]|[TS]}K{M(Oxidation (M))|F}{I|L}{I|L} 7.0618;6.2746;6.1532;5.6382;5.3659;5.018;4.8509;4.7296;4.2307;4.1383 +;-;-;-;-;-;-;-;-;- + 4518 NaN NaN 319931.8 NaN 15382 3683 19065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19068 78.705 NaN 840850 35 0 64610 0.261 -1 LFSLCGSATFH 11 84 620.2953725594506 1238.576192185701 2 620.29541015625 MULTI HCD FTMS 0 0 0 19065 432617.0625 0.7412155193802716 -1 0.02938079833984375 3 Carbamidomethyl (C) _LFSLC(Carbamidomethyl (C))GSATFH_ ENST00000544551.5_1_11:110100909-110101011:-|nuORF 13.90604991867851 0.33591854289260503 1 YDA{I|L}WH{M(Oxidation (M))|F} 7 -1 61.917 0 0 4.9991 0 0 288.1473782446219 0 288.1473782446219 0 25.25821314790491 0 0 0 2.4247425010840047 0 0.25 0 YDA{I|L}WH{M(Oxidation (M))|F} 4.9991 - 2062 NaN NaN 216237.3 NaN 15383 3683 19065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19069 78.708 NaN 178260 35 0 36419 0.263 -1 PSLCLITAL 9 34 494.2807141671845 986.546875401169 2 494.2807922363281 MULTI HCD FTMS 0 0 0 19065 185415.296875 0.6903878107640787 4 -0.10451507568359375 4 Carbamidomethyl (C) _PSLC(Carbamidomethyl (C))LITAL_ ENSG00000277161|ENST00000614443|PIGW 25.399314129420986 0.14091189997036632 1 {I|L}TA{I|L} 4 -1 51.186 0 0 5.1884 0 0 570.2854043685996 0 570.2854043685996 0 51.18562527100117 0 0 0 1.5 0 0.4247425010840047 0 {I|L}TA{I|L} 5.1884 + + 19 NaN NaN 110192.5 NaN 15384 3683 19065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19070 78.712 NaN 114190 35 0 6579.4 0.261 + 11242 IYLGISLINI 10 51 559.8449364648865 1117.6753199965729 2 559.8449096679688 MULTI HCD FTMS 0 0 0 19065 148570.921875 1 0 0 5 Unmodified _IYLGISLINI_ tr|U7T5U6|U7T5U6_FUSNUDUF4352domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00394PE=4SV=1 26.268140514670165 0.2654086933305545 1 [Y{I|L}]{I|L} 3 7 33.869 0 0 3.0303 0 0 0 725.4205341901853 725.4205341901853 15.356668758921824 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 + [Y{I|L}]{I|L} 3.0303 + + 40 NaN NaN 105569.4 NaN 15385 3683 19065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19072 78.716 NaN 25196000 35 0 3797100 0.327 + 20182 NYLDRFLSL 9 119 570.8060184248639 1139.5974839165276 2 570.8071899414062 MULTI HCD FTMS 0 0 0 19071 28772324 0.84430570165791 1 -0.0293731689453125 1 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 184.3555567057281 7.78523872066095E-13 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 122.35 0 0 10.736 10.736 92.566 0 0 0 7.327796776480469 7.327796776480469 7.327796776480469 7.327796776480469 0 2.8494850021680094 1.6989700043360187 0.3494850021680094 2.3525684359364405 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DRS{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NDR{M(Oxidation (M))|F}{I|L}S{I|L};[Y{I|L}]NDR{M(Oxidation (M))|F}S{I|L}{I|L};{I|L}YNDR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}D{I|L}[R{M(Oxidation (M))|F}]S{I|L};[Y{I|L}]GGDR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L} 10.736;10.093;9.8099;9.2032;8.6663;7.7401;7.7377;7.596;7.3222;7.1618 +;+;-;-;-;-;-;-;-;- + 6886 NaN NaN 1090608.5 NaN 15386 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19073 78.721 NaN 2037400 35 0 751660 0.264 + 6226 FPESAGAF 8 61 413.1929484024883 824.3713438717766 2 413.19354248046875 MULTI HCD FTMS 0 0 0 19071 1292707.75 0.37392176702213176 -3 0.0784759521484375 2 Unmodified _FPESAGAF_ REV__ENSG00000159433|ENST00000290607|STARD9 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.4293 0 0 659.2921945571267 0 659.2921945571267 0 3.555911520008639 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4293 + + 8 + NaN NaN 393864.4 NaN 15387 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19074 78.724 NaN 1039900 35 0 75343 0.261 + 15540 LPDPRELIEI 10 94 597.8400638520732 1193.6655747709463 2 597.8400268554688 MULTI HCD FTMS 0 0 0 19071 633012.375 1 0 0 3 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 69.33821966488729 0.018369488249132326 1 {[QN]|[E{I|L}]|[KN]}[RP]{I|L}DP{I|L}E{I|L} 10 5 + 67.244 0 0 5.6334 5.6334 85.594 0 0 0 13.549835755945509 43.70137353395029 13.549835755945509 6.98970004336018 0 0.7614393726401688 1.0969100130080565 0.5629529932484498 0.23965182871044374 {[QN]|[E{I|L}]|[KN]}[RP]{I|L}DP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[RP]DP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}DPE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[PA]VVDP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}EDP{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}E[VP]E{I|L};{[QN]|[E{I|L}]|[KN]}[RP][DP]{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}DEP{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[RP]DPE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}E{I|L}DP{I|L} 5.6334;5.0479;4.9559;4.8657;4.7845;4.6477;4.4623;4.3847;4.3703;4.2475 -;-;-;-;-;-;-;-;-;- 1289 NaN NaN 242996.2 NaN 15388 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19075 78.728 NaN 485420 35 0 40644 0.261 + 34787 YQTPRLWLF 9 78 612.3323844797587 1222.6502160263174 2 612.3325805664062 MULTI HCD FTMS 0 0 0 19071 302838.78125 0.14406056107447424 10 -0.281585693359375 4 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 70.33199760932243 0.0089807860198535 1 [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F} 9 0 + 53.862 0 0 4.4053 4.4053 90.248 0 0 0 14.449689600073441 46.55968488531055 14.449689600073441 53.86173177019149 0 1.5484550065040281 0 1.0774509799928715 0.7302046884880937 + + [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F} 4.4053 + + 192 NaN NaN 156985.4 NaN 15389 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19076 78.731 NaN 549940 35 0 53036 0.261 + 5652 FNIRDYGEPF 10 83 629.3001022746623 1256.5856516161246 2 629.8145141601562 MULTI HCD FTMS 0 0 0 19071 106688.84375 1 0 0 5 Unmodified _FNIRDYGEPF_ ENSG00000135899|ENST00000258381|SP110 12.240655878213236 0.39661705172222156 1 [YV][C(Carbamidomethyl (C))N]TN{I|L}VK{M(Oxidation (M))|F} 10 9 + 38.433 0 0 3.0585 3.0585 81.106 0 0 0 16.970355045588192 -1.4097805735833262 -1.4097805735833262 4.330532103693862 0 0 1.6989700043360187 0.5 0 [YV][C(Carbamidomethyl (C))N]TN{I|L}VK{M(Oxidation (M))|F};[YV][EP]{I|L}WY[C(Carbamidomethyl (C))K];[YV][C(Carbamidomethyl (C))N]T{I|L}NVK{M(Oxidation (M))|F};[YV][EP]{I|L}AD[HA]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]{I|L}[EP]WY[C(Carbamidomethyl (C))K];[YV][C(Carbamidomethyl (C))N]TGG{I|L}VK{M(Oxidation (M))|F};[YV]{I|L}[EP]AD[HA]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][EP]{I|L}A[WH]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][EP]{I|L}W[HA]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]{I|L}[EP]W[HA]{[QD]|[EN]|[WG]|[KD]|[RS]} 3.0585;2.7139;2.6789;2.5044;2.4744;2.3292;2.2649;2.2207;2.2207;1.9811 -;-;-;-;-;-;-;-;-;- 1678 NaN NaN 170007.5 NaN 15390 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19077 78.734 NaN 393580 35 0 26741 0.261 -1 IYYSFNIVC 9 82 589.7787807218026 1177.5430085104051 2 589.7792358398438 MULTI HCD FTMS 0 0 0 19071 35989.546875 0.2838729945184521 1 -0.0293731689453125 6 Carbamidomethyl (C) _IYYSFNIVC(Carbamidomethyl (C))_ ENSG00000183034|ENST00000331427|OTOP2 18.13498045792455 0.20367413111508956 1 YY{I|L} 3 -1 25.942 0 0 2.2031 0 0 0 735.3089367847996 735.3089367847996 9.677980659593253 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 2.2031 - 181 NaN NaN 141833.8 NaN 15391 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19078 78.738 NaN 108490 35 0 14548 0.264 -1 0 47 404.18801292452684 806.3614729158537 2 404.18731689453125 MULTI HCD FTMS 0 0 0 19071 34653.3671875 0.09118053422259702 54 -1.5561599731445312 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.5153 0 0 641.282125236946 0 641.282125236946 0 2.2969624387961556 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5153 - 7 + NaN NaN 89334.9 NaN 15392 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19079 78.741 NaN 257770 35 0 27319 0.261 + 26955 SYLITSVEL 9 77 512.7818348522122 1023.5491167712245 2 512.7831420898438 MULTI HCD FTMS 0 0 0 19071 91001.078125 0.10110735195899423 13 -0.3702850341796875 8 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 47.748688679222035 0.03472022231463587 1 {I|L}TSVE{I|L} 6 3 36.181 0 0 3.5348 0 0 363.1794605939469 0 363.1794605939469 0 26.924216287160796 0 0 0 1.4392404878284264 0 0.28872548999643577 0 + {I|L}TSVE{I|L} 3.5348 + + 113 NaN NaN 139170 NaN 15393 3684 19071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19081 78.746 NaN 336390 35 0 22289 0.327 + 34568 YPLLLKEIL 9 66 551.3496997816405 1100.684846630081 2 551.3497314453125 MULTI HCD FTMS 0 0 0 19080 217620.4375 0.23768291028824742 9 -0.2522125244140625 1 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 82.5293158979368 0.005033931517079822 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}KE{I|L}{I|L} 9 0 + 93.396 0 0 8.4852 8.4852 91.194 0 0 0 10.45371572735597 10.45371572735597 10.45371572735597 8.737125054200234 0 1.75 1.6989700043360187 0.7302046884880937 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}KE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}K{I|L}E{I|L};YP{I|L}K{I|L}{I|L}{I|L}E{I|L};[Y{I|L}]P{I|L}{I|L}K{I|L}E{I|L};[Y{I|L}]P{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}K{I|L}E{I|L};[{I|L}P]Y{I|L}{I|L}K{I|L}E{I|L};[Y{I|L}]{I|L}P{I|L}K{I|L}E{I|L};[{I|L}P]{I|L}Y{I|L}KE{I|L}{I|L};[{I|L}P]Y{I|L}{I|L}KE{I|L}{I|L} 8.4852;7.6914;7.5355;6.9793;6.8646;6.8401;6.8194;6.7266;6.7254;6.7046 +;-;-;-;-;-;-;-;-;- + 472 NaN NaN 132696.8 NaN 15394 3685 19080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19082 78.75 NaN 505620 35 0 22354 0.261 + 16354 LRVLDRTE 8 92 501.29058431079056 1000.5666156883811 2 501.2906494140625 MULTI HCD FTMS 0 0 0 19080 502175.09375 0.8827886460577212 -2 0.0489044189453125 2 Unmodified _LRVLDRTE_ REV__ENSG00000169126|ENST00000305242|ODAD2;REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2 4.3292370932331545 0.5355693454741696 1 [{M(Oxidation (M))|F}T][MT]KKV{M(Oxidation (M))|F} 8 -1 [{M(Oxidation (M))|F}T][MT]KKV + + 12.218 -9.2833 -1.1111 1.2212 1.2212 58.828 0 0 0 0 -0.7145627856776571 -0.7145627856776571 0 0 0 0 0 0 [{M(Oxidation (M))|F}T][MT]KKV{M(Oxidation (M))|F} 1.2212 - 116 + NaN NaN 153853.3 NaN 15395 3685 19080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19083 78.754 NaN 330350 35 0 45435 0.261 + -1 IMRAVWFF 8 71 543.2861582855309 NaN 0 543.2976684570312 PEAK HCD FTMS 0 0 0 19080 20436.87109375 0.5139670320083998 1 -0.01940155029296875 3 Oxidation (M) _IM(Oxidation (M))RAVWFF_ REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1 14.581692164780916 0.38795613832665576 1 YV{I|L}TQSP 7 -1 34.557 0 0 3.1863 0 0 131.06620761633445 162.05617700748283 293.1223846238173 0 0 0 0 0 0 0 1.1861818737241734 0 YV{I|L}TQSP 3.1863 - 392 + NaN NaN 132104.5 NaN 15396 3685 19080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19084 78.757 NaN 261270 35 0 12158 0.261 + 20844 PIALLTIMF 9 78 509.8037789060589 1017.5930048789178 2 509.80377197265625 MULTI HCD FTMS 0 0 0 19080 360221.875 1 0 0 4 Unmodified _PIALLTIMF_ ENSG00000135914|ENST00000258400|HTR2B;HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F} 1 8 12.764 0 0 1.2544 0 0 852.5133825418069 0 852.5133825418069 0 10.289959734888434 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2544 + + 66 + NaN NaN 136955.4 NaN 15397 3685 19080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19085 78.76 NaN 106340 35 0 6362.7 0.261 + 33803 YLHHPILNL 9 56 560.3188465461669 1118.6231401591338 2 560.346435546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLHHPILNL_ REV__ENSG00000157426|ENST00000205214|AASDH;REV__nc|ENSG00000157426|Q4L235-2|AASDH 7.910154910731844 0.2910521888787154 1 Q{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 4 -1 5.7133 0 0 0.51075 0 0 632.3412015378432 0 632.3412015378432 0 0.22878745280337487 0 0 0 0 0 0 0 Q{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 0.51075 - 22 + NaN NaN 97468.3 NaN 15398 3685 19080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19087 78.765 NaN 1464100 35 0 262900 0.327 + 13742 KYPSPFFVF 9 84 566.297318493246 1130.580084053292 2 566.2981567382812 MULTI HCD FTMS 0 0 0 19086 838114.8125 0.009765306039818348 60 -1.7364349365234375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 118.89474601620944 0.0014903111061077812 1 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 82.84 0 0 7.3272 7.3272 86.988 0 0 0 3.176193466240562 3.176193466240562 3.176193466240562 3.176193466240562 0 2.7302046884880937 0 0.9802046884880937 0.6861818737241735 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[RV][YV]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.3272;7.0463;5.3744;5.2639;4.4209;4.3556;4.0441;4.0227;2.7699;2.7473 +;+;-;-;-;-;-;-;-;- + 1725 NaN NaN 322247.9 NaN 15399 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19088 78.77 NaN 1333000 35 0 516060 0.263 + 8729 HHGAGAFF 8 44 422.19864156822445 842.3827302032489 2 422.1988220214844 MULTI HCD FTMS 0 0 0 19086 491961.8125 0.5304525073374177 2 -0.06563568115234375 2 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3032757128177 0 677.3032757128177 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 1 + NaN NaN 298708.5 NaN 15400 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19089 78.773 NaN 623790 35 0 58189 0.261 + 11236 IYLERFPIF 9 83 599.3368677776591 1196.6591826221181 2 599.3369750976562 MULTI HCD FTMS 0 0 0 19086 227328.453125 0.43791300156979046 3 -0.09845733642578125 3 Unmodified _IYLERFPIF_ ENSG00000011260|ENST00000225298|UTP18 51.41523569358685 0.02959097413485123 1 [Y{I|L}]{I|L}ER{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9 0 + 84.307 0 0 7.0452 7.0452 87.711 0 0 0 14.009913748297791 64.69518814023203 14.009913748297791 6.020599913279625 0 2.3494850021680094 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}ER{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}ER{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}[VG][KQ]P{M(Oxidation (M))|F};[Y{I|L}][QA][KA]{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[Y{I|L}][QA][KA]{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]R{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]R{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F};[Y{I|L}]V[W{I|L}]{[NV]|[RG]}[YK];{[QN]|[E{I|L}]|[KN]}[Y{I|L}][VG]{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[Y{I|L}][VG]{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F} 7.0452;6.5421;4.6529;4.3976;3.8945;3.3902;2.887;2.788;2.6207;2.1176 +;-;-;-;-;-;-;-;-;- + 568 NaN NaN 188629 NaN 15401 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19090 78.777 NaN 256750 35 0 94470 0.262 -1 0 50 496.3038712465691 990.5931895599382 2 496.303955078125 MULTI HCD FTMS 0 0 0 19086 56282.05859375 0.17927701683746347 1 -0.0362091064453125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.55366 0 0 113.18883523727284 727.3148287408811 840.503663978154 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.55366 - 5 + NaN NaN 121631.4 NaN 15402 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19091 78.78 NaN 1412200 35 0 253200 0.261 + 4917 FAIPLIERL 9 92 536.3317389645003 1070.6489249958006 2 536.3316650390625 MULTI HCD FTMS 0 0 0 19086 163521.828125 0.3684698978026859 2 -0.06563568115234375 5 Unmodified _FAIPLIERL_ DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF 47.594388314883695 0.03493607795751234 1 {I|L}{I|L}P{I|L}S{I|L} 6 5 40.544 0 0 3.7869 0 0 416.23823744941564 0 416.23823744941564 0 6.108222579469555 0 0 0 1.6694451763165201 0 0 0 {I|L}{I|L}P{I|L}S{I|L} 3.7869 - 1156 NaN NaN 297470.3 NaN 15403 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19092 78.783 NaN 212970 35 0 52231 0.261 + 21632 PYPQYLAVI 9 49 532.2950218025961 1062.5754906719922 2 532.295166015625 MULTI HCD FTMS 0 0 0 19086 115116.375 0.43678938593411454 2 -0.06563568115234375 6 Unmodified _PYPQYLAVI_ ENSG00000063322|ENST00000315588|MED29 21.74664581756881 0.17247014374749275 1 {I|L}AV{I|L} 4 5 44.24 0 0 4.1635 0 0 648.2930775373062 0 648.2930775373062 0 29.636153375280188 0 0 0 1.2302046884880937 0 0 0 + {I|L}AV{I|L} 4.1635 + + 48 NaN NaN 129964.4 NaN 15404 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19093 78.787 NaN 153320 35 0 35908 0.261 + 686 APVLPEPIL 9 39 474.7919062616602 947.5692595901204 2 474.7920227050781 MULTI HCD FTMS 0 0 0 19086 54663.765625 0.4736091269177822 2 -0.06563568115234375 7 Unmodified _APVLPEPIL_ ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2 11.640296217721598 0.25978676193971967 1 T 1 9 1.2591 0 0 0.13287 0 0 713.4689615938298 130.03403650455314 843.5029980983829 0 0 0 0 0 0 0 0 0 T 0.13287 - 3 + NaN NaN 120947.6 NaN 15405 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19094 78.79 NaN 190300 35 0 12690 0.261 + -1 FVVRNHCNKEF 11 48 483.90681597913886 1448.6986185376165 3 483.9064025878906 MULTI HCD FTMS 0 0 0 19086 34785.53125 0.3259263510279361 2 -0.06563568115234375 8 Carbamidomethyl (C) _FVVRNHC(Carbamidomethyl (C))NKEF_ REV__ENSG00000185238|ENST00000331079|PRMT3;REV__nc|ENSG00000185238|O60678-2|PRMT3 4.715918219556657 0.3982382512160552 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.5179 0 0 1283.6194997405446 0 1283.6194997405446 0 7.296962438796157 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.5179 + + 28 + NaN NaN 111739.9 NaN 15406 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19095 78.793 NaN 211400 35 0 16035 0.261 + 5873 FPDFQDSVQTL 11 62 648.8089412013417 NaN 0 648.8087158203125 PEAK HCD FTMS 0 0 0 19086 38799.2734375 0.671083164103405 1 -0.0362091064453125 9 Unmodified _FPDFQDSVQTL_ ENSG00000138386|ENST00000337386|NAB1;ENST00000458074.1_1_X:150394703-150395165:-|nuORF 20.580933911654288 0.2519942933214944 1 TQW 3 10 17.792 0 0 1.3732 0 0 131.09949753764573 746.2849825494749 877.3844800871207 0 0 0 0 0 0.8494850021680094 0 0 0 TQW 1.3732 - 40 + NaN NaN 113694.7 NaN 15407 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19096 78.797 NaN 191590 35 0 17912 0.263 + 26956 SYLITSVEL 9 74 512.7818348522122 1023.5491167712245 2 512.7824096679688 MULTI HCD FTMS 0 0 0 19086 21732.880859375 0.024146461551954466 15 -0.44412994384765625 10 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 24.020572477871973 0.15282392193088168 1 KTSEV{I|L} 6 6 30.539 0 0 2.9836 0 0 348.1772633283219 0 348.1772633283219 0 8.091765925643983 0 0 0 0.805462187404089 0 0 0 KTSEV{I|L} 2.9836 - 253 NaN NaN 108770.7 NaN 15408 3686 19086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19098 78.801 NaN 1873600 35 0 628810 0.327 + 4907 FAIPLIEKL 9 71 522.3285503584551 1042.6425477837101 2 522.3287353515625 MULTI HCD FTMS 0 0 0 19097 1509170.625 0.29386343204197973 4 -0.11466217041015625 1 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 106.94017166704063 0.003441928997083001 1 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 90.231 0 0 8.654 8.654 93.963 0 0 0 70.08024070117017 8.499161495794425 8.499161495794425 11.97621246364342 0 3.1549471895720984 0 1.110924374808178 0.25 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}{I|L}EK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AP{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}T[VG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E;{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}E{I|L}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AP{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}{I|L}T[VG]{I|L} 8.654;7.5054;6.4484;6.2153;5.9908;5.723;5.2654;5.1583;4.9338;4.433 +;+;-;-;-;-;-;-;-;- + 332 + NaN NaN 367160 NaN 15409 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19099 78.806 NaN 849590 35 0 47598 0.261 -1 0 92 479.2774935703601 956.5404342075202 2 479.27740478515625 MULTI HCD FTMS 0 0 0 19097 1063830.125 0.9965001009304807 3 -0.0885162353515625 2 NaN NaN 1 QV 2 -1 11.198 0 0 1.1707 0 0 502.2990551229328 224.09771143131096 726.3967665542438 0 0 0 0 0 0.5 0 0 0 QV 1.1707 - 129 + NaN NaN 211163 NaN 15410 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19100 78.809 NaN 441080 35 0 66926 0.261 + 22069 QHFQQYLL 8 60 538.7792252746052 1075.5438976160103 2 538.7793579101562 MULTI HCD FTMS 0 0 0 19097 90690.4609375 0.561347016703397 3 -0.0885162353515625 3 Unmodified _QHFQQYLL_ ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;nc|ENSG00000141431|Q9C0F0-2|ASXL3 19.438996006549623 0.45076845602799126 1 Y{I|L}{I|L} 3 5 29.169 0 0 2.712 0 0 668.302049705275 0 668.302049705275 0 15.189549981487076 0 0 0 0.7742275032520141 0 0 0 + Y{I|L}{I|L} 2.712 + + 105 NaN NaN 169285.9 NaN 15411 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19101 78.813 NaN 108750 35 0 22018 0.262 + 20481 PCPGARHH 8 43 437.70911506485083 873.4036771965017 2 437.7091979980469 MULTI HCD FTMS 0 0 0 19097 196821.90625 1 0 0 4 Unmodified _PCPGARHH_ REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF 0.7936320650641473 0.540814922690045 1 N 1 -1 11.99 0 0 1.3728 0 0 741.3475228769689 0 741.3475228769689 0 5 0 0 0 0 0 0 0 N 1.3728 - 13 + NaN NaN 101380.4 NaN 15412 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19102 78.816 NaN 148270 35 0 19569 0.261 + 2279 DLPNRPETSF 10 44 588.2905153573664 1174.5664777815327 2 588.2896118164062 MULTI HCD FTMS 0 0 0 19097 16805.33203125 0.15497414422935812 4 -0.11466217041015625 5 Unmodified _DLPNRPETSF_ ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF 10.799506525563784 0.4100970765206026 1 TS{M(Oxidation (M))|F} 3 7 34.425 0 0 2.9308 0 0 821.405776127815 0 821.405776127815 0 15.841218823962109 0 0 0 0.9247425010840047 0 0.5 0 + TS{M(Oxidation (M))|F} 2.9308 + + 28 NaN NaN 102775.7 NaN 15413 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19103 78.819 NaN 155460 35 0 23392 0.261 + 24243 RYFLPPYTF 9 44 602.3135793626778 NaN 0 602.3138427734375 PEAK HCD FTMS 0 0 0 19097 77409.1171875 0.5672437782394844 3 -0.0885162353515625 6 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 22.736283301280096 0.1690317064107932 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 6 16.695 0 0 1.3882 0 0 165.07570201618483 463.20993982486567 628.2856418410505 0 0 0 0 0 0.9247425010840047 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 1.3882 - 18 + NaN NaN 115888.5 NaN 15414 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19104 78.823 NaN 260060 35 0 20791 0.262 + 26645 SYADNILSF 9 67 515.2479531862327 1028.4813534392654 2 515.2488403320312 MULTI HCD FTMS 0 0 0 19097 99962.640625 0.5399772145736249 -5 0.1338958740234375 7 Unmodified _SYADNILSF_ ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion 100.0907132914201 0.004261551473353346 1 {[{M(Oxidation (M))|F}C]|[YS]}ADN{I|L}{I|L}S{M(Oxidation (M))|F} 9 0 + 91.283 0 0 8.8755 8.8755 96.011 0 0 0 4.137342758552691 73.58780533059658 4.137342758552691 21.510234424404686 0 2.7614393726401687 0 1.055462187404089 1.2302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}ADN{I|L}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}ADGG{I|L}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[NV]|[RG]}{[CP]|[EA]}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AAA{[CP]|[EA]}{I|L}S{M(Oxidation (M))|F};EE[YE]KKG{M(Oxidation (M))|F};EE{I|L}{[HG]|PP}[NP]S{M(Oxidation (M))|F} 8.8755;6.7841;4.7594;3.9831;1.6639;1.2 +;-;-;-;-;- + 543 NaN NaN 122101.1 NaN 15415 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19105 78.826 NaN 141420 35 0 11408 0.261 + 3036 EADYSYWTL 9 55 574.2500867131487 1146.4856204930973 2 574.250732421875 MULTI HCD FTMS 0 0 0 19097 51164.75390625 0.8638164713554204 -2 0.05561065673828125 8 Unmodified _EADYSYWTL_ ENSG00000130309|ENST00000252599|COLGALT1;ENSG00000198756|ENST00000361927|COLGALT2;ENST00000486375.1_1_1:183899365-183909857:-|nuORF;ENST00000593832.1_1_19:17691448-17692250:+|nuORF 30.636539890814138 0.10832830463492794 1 WT{I|L} 3 6 30.177 0 0 2.6322 0 0 728.2643161108656 0 728.2643161108656 0 13.187587626244124 0 0 0 1 0 0 0 + WT{I|L} 2.6322 + + 25 NaN NaN 110185.8 NaN 15416 3687 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19107 78.831 NaN 1389500 35 0 143300 0.327 + 6409 FPHLTVVLL 9 92 519.8211470376159 1037.6277411420317 2 519.8211059570312 MULTI HCD FTMS 0 0 0 19106 616622.3125 0.11424898048610571 12 -0.33904266357421875 1 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 89.42679046578446 0.004540987215715461 1 {I|L}VVT{I|L}C{I|L}{M(Oxidation (M))|F} 8 7 63.644 0 0 6.1336 0 0 131.0949925469585 0 131.0949925469585 0 44.971908492045486 0 0 0 2.499134866972623 0 1.079689690656103 0 {I|L}VVT{I|L}C{I|L}{M(Oxidation (M))|F} 6.1336 - 576 + NaN NaN 291491.8 NaN 15417 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19108 78.835 NaN 455170 35 0 22165 0.261 -1 0 83 487.79078151675463 973.5670101003093 2 487.7908020019531 MULTI HCD FTMS 0 0 0 19106 343313.625 0.5531322964662585 4 -0.11144256591796875 2 NaN NaN 1 [RV]A 3 -1 7.8039 0 0 0.80158 0 0 0 644.3433321588499 644.3433321588499 0.06166867536862419 0 0 0 0 0.4247425010840047 0 0 0 [RV]A 0.80158 - 47 + NaN NaN 164765.4 NaN 15418 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19109 78.839 NaN 463820 35 0 70302 0.261 + 18288 MPDVELNL 8 48 465.7336810963631 929.4528092595262 2 465.73358154296875 MULTI HCD FTMS 0 0 0 19106 398789.71875 0.8064383645441081 4 -0.11144256591796875 3 Unmodified _MPDVELNL_ ENSG00000124942|ENST00000378024|AHNAK 50.855029805455786 0.12247309515496523 1 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L} 8 3 + 61.031 0 0 6.5663 6.5663 89.724 0 0 0 18.723637474483468 33.85151878060192 18.723637474483468 9.262137858390815 0 1.1861818737241734 1.3010299956639813 0.3494850021680094 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}GG{I|L} 6.5663;5.5698 -;- 90 NaN NaN 164593 NaN 15419 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19110 78.842 NaN 456690 35 0 127270 0.261 + 20067 NYIPRFWTF 9 67 622.3163957915608 1242.6182386499215 2 622.316650390625 MULTI HCD FTMS 0 0 0 19106 196388.984375 0.014298543867539131 40 -1.1449813842773438 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 53.832793166522166 0.026208976789938845 1 [YN]{I|L} 3 6 44.507 0 0 3.5817 0 0 0 849.405034804267 849.405034804267 16.447340481202062 0 0 0 0 1 1.6989700043360187 0 0.7059771852360797 + [YN]{I|L} 3.5817 + + 75 NaN NaN 160226.6 NaN 15420 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19111 78.846 NaN 655950 35 0 214080 0.261 + 30023 VFPFRTFYL 9 69 595.3239615237284 1188.6333701142566 2 595.3240966796875 MULTI HCD FTMS 0 0 0 19106 183988.671875 0.7320838854660837 1 -0.0328216552734375 5 Unmodified _VFPFRTFYL_ ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 36.506200033944 0.08138327636155518 1 PD{I|L} 3 7 29.693 0 0 2.4981 0 0 845.4463978498062 0 845.4463978498062 0 14.190840781556203 0 0 0 0.5 0 0 0 PD{I|L} 2.4981 - 114 NaN NaN 186398.3 NaN 15421 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19112 78.849 NaN 448330 35 0 131150 0.261 -1 LYPQFMFHL 9 55 606.2990095347391 1210.583466136278 2 606.3005981445312 MULTI HCD FTMS 0 0 0 19106 98496.40625 0.6555914401427544 3 -0.085235595703125 6 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 13.50788311687929 0.24365122550260465 1 [Y{I|L}][QP]{M(Oxidation (M))|F} 5 -1 28.468 0 0 2.3516 0 0 0 559.2332247369749 559.2332247369749 22.98332479720628 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}][QP]{M(Oxidation (M))|F} 2.3516 + + 24 + NaN NaN 159671.7 NaN 15422 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19113 78.852 NaN 240060 35 0 33548 0.261 + 32265 VYTVVDEMFL 10 64 616.299301352522 1230.5840497718439 2 616.2994384765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 88.95385435242217 0.0010827080174394257 1 {M(Oxidation (M))|F}EDV{I|L}A{M(Oxidation (M))|F}{I|L} 8 7 72.204 0 0 5.8675 0 0 278.16304213691564 0 278.16304213691564 0 46.51776940615747 0 0 0 1.7302046884880937 0 0.5796896906561032 0 {M(Oxidation (M))|F}EDV{I|L}A{M(Oxidation (M))|F}{I|L} 5.8675 - 814 NaN NaN 124712.4 NaN 15423 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19114 78.855 NaN 807110 35 0 197230 0.261 -1 QAQRMNSLL 9 70 538.7792252746052 1075.5438976160103 2 539.2681274414062 MULTI HCD FTMS 0 0 0 19106 18620.623046875 0.23177753209375815 3 -0.085235595703125 8 Oxidation (M) _QAQRM(Oxidation (M))NSLL_ CON__Q3SZV7 14.838274106304384 0.23215694253501695 1 {I|L}{I|L} 2 -1 16.95 0 0 1.576 0 0 831.3685780255875 0 831.3685780255875 0 2.346368802282015 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 1.576 + + 49 NaN NaN 210577.5 NaN 15424 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19115 78.859 NaN 179000 35 0 8675 0.261 + 30564 VNLLCATVF 9 70 490.2686512029637 NaN 0 490.2687072753906 PEAK HCD FTMS 0 0 0 19106 55506.6328125 0.40273474322776226 3 -0.085235595703125 9 Unmodified _VNLLCATVF_ REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense 6.723162845929126 0.26266733336404485 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.56049 0 0 171.09562516708576 657.3358248346311 828.4314500017169 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.56049 + + 24 + NaN NaN 118436.3 NaN 15425 3688 19106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19117 78.864 NaN 13184000 35 0 1961900 0.327 + 20183 NYLDRFLSL 9 109 570.8060184248639 1139.5974839165276 2 570.8068237304688 MULTI HCD FTMS 0 0 0 19116 8187168.5 0.2402472961511221 6 -0.1706085205078125 1 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 171.46415876497497 3.0296185862974766E-09 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 121.89 0 0 10.696 10.696 93.241 0 0 0 9.0687870428591 9.0687870428591 9.0687870428591 9.0687870428591 0 2.8494850021680094 1.6989700043360187 0.5649093276264391 2.091129063296272 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DRS{M(Oxidation (M))|F}{I|L}{I|L};[YN]{I|L}D{I|L}[R{M(Oxidation (M))|F}]S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[WQ]{M(Oxidation (M))|F}{I|L}S{I|L};{I|L}[YN]DR{M(Oxidation (M))|F}{I|L}S{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YN]R{M(Oxidation (M))|F}{I|L}S{I|L} 10.696;9.8999;9.5592;8.9378;7.6507;7.2335;7.0041;6.9025;6.8556;6.7825 +;+;-;-;-;-;-;-;-;- + 3796 NaN NaN 825926.6 NaN 15426 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19118 78.868 NaN 4810100 35 0 1882100 0.264 -1 CGRGAPHA 8 78 413.1929484024883 824.3713438717766 2 413.19354248046875 MULTI HCD FTMS 0 0 0 19116 3118225.75 0.9019613925993033 2 -0.0524139404296875 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 14.292 0 0 1.7337 0 0 155.093848673786 553.1715792291624 708.2654279029484 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L} 1.7337 - 10 + NaN NaN 797428.2 NaN 15427 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19119 78.872 NaN 1896000 35 0 170190 0.261 + 24447 RYLDLFTSF 9 93 581.3004901821857 1160.5864274311714 2 581.30078125 MULTI HCD FTMS 0 0 0 19116 1204914.125 0.1351478600531096 6 -0.1706085205078125 3 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 103.41943736471063 0.004016698775839292 1 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 89.121 0 0 7.679 7.679 88.648 0 0 0 52.761095254963465 4.655593552960937 4.655593552960937 5.606369853881731 0 2.8494850021680094 0 1.555462187404089 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[Y{I|L}]RD{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[YR]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[Y{I|L}]V{[RE]|[WV]}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[Y{I|L}][HS]{I|L}DGP{I|L}{M(Oxidation (M))|F};[NP]AA{M(Oxidation (M))|F}{I|L}DGP{I|L}{M(Oxidation (M))|F};[Y{I|L}][HS]{I|L}D{I|L}[PG]{M(Oxidation (M))|F} 7.679;7.1959;6.7999;5.8919;5.5271;4.8429;4.6803;4.0869;3.5698;3.4318 +;-;-;-;-;-;-;-;-;- + 1282 + NaN NaN 371880.4 NaN 15428 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19120 78.875 NaN 1213700 35 0 170130 0.261 + 13434 KYPENFFLL 9 91 585.8132425088911 1169.6119320845821 2 585.8133544921875 MULTI HCD FTMS 0 0 0 19116 908665.9375 0.004583231299190755 122 -3.4866561889648438 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 74.19965305603844 0.007729275404663812 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 85.416 0 0 7.303 7.303 88.021 0 0 0 5.509074688805811 53.11365663899273 5.509074688805811 5.568109453757657 0 2.6549471895720984 0 0 1.5044321917401078 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.303;6.8269;6.5157;6.0396;6.0396;5.8499;5.8422;5.4006;5.3661;5.0549 +;-;-;-;-;-;-;-;-;- + 3003 NaN NaN 269666.5 NaN 15429 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19121 78.878 NaN 1085500 35 0 308780 0.261 + 33810 YLIKWQLI 8 81 538.8288546804187 1075.6431564276372 2 538.828857421875 MULTI HCD FTMS 0 0 0 19116 294589.34375 0.2805530635650432 -5 0.1472320556640625 5 Unmodified _YLIKWQLI_ REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1 28.173230860318316 0.38285857429842723 1 {I|L}PK{I|L} 4 -1 21.815 0 0 2.0281 0 0 606.3171851147692 0 606.3171851147692 0 3.359542653121874 0 0 0 0 0 0 0.28872548999643577 {I|L}PK{I|L} 2.0281 - 296 NaN NaN 247245.5 NaN 15430 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19122 78.882 NaN 164320 35 0 18007 0.261 + 21506 PYGSDFIRSI 10 51 577.7956781704225 1153.576803407645 2 577.795166015625 MULTI HCD FTMS 0 0 0 19116 80134.4921875 0.31241671575012037 4 -0.104766845703125 6 Unmodified _PYGSDFIRSI_ REV__ENSG00000010932|ENST00000617670|FMO1;REV__ENST00000469112.5_2_1:171244541-171251486:+|nuORF;REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF;REV__nc|ENSG00000010932|Q01740-2|FMO1 10.799506525563784 0.4100970765206026 1 {I|L}[R{M(Oxidation (M))|F}]{NN|[MP]|[D{I|L}]|[EV]}S{I|L} 7 -1 34.793 0 0 3.0161 0 0 291.08519179511876 0 291.08519179511876 0 31.69424766394343 0 0 0 1.5 0 0.3807196863200844 0 {I|L}[R{M(Oxidation (M))|F}]{NN|[MP]|[D{I|L}]|[EV]}S{I|L} 3.0161 - 14 NaN NaN 104190 NaN 15431 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19123 78.885 NaN 166590 35 0 26914 0.261 -1 AEMLPGVLQQF 11 47 624.818495803835 1247.62243867447 2 624.8193359375 MULTI HCD FTMS 0 0 0 19116 60074.796875 0.8194614657002809 4 -0.104766845703125 7 Oxidation (M) _AEM(Oxidation (M))LPGVLQQF_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 17.44264345198275 0.3051040874848456 1 {I|L}[RP]{I|L}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7 -1 26.471 0 0 2.1217 0 0 347.11473281074376 0 347.11473281074376 0 21.86645088746296 0 0 0 1.3494850021680094 0 0 0 {I|L}[RP]{I|L}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.1217 - 31 NaN NaN 122871.3 NaN 15432 3689 19116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19125 78.89 NaN 486930 35 0 22156 0.327 + 3588 EKIQKNKN 8 78 501.29058431079056 1000.5666156883811 2 501.29071044921875 MULTI HCD FTMS 0 0 0 19124 370839.75 0.6519103095341112 3 -0.07849884033203125 1 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 4.3292370932331545 0.5355693454741696 1 Q 1 7 8.0989 0 0 0.80944 0 0 502.2986930531508 367.1974642361546 869.4961572893054 0 0 0 0 0 0.5 0 0 0 + Q 0.80944 + + 86 + NaN NaN 159081.1 NaN 15433 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19126 78.894 NaN 1346200 35 0 132850 0.261 + 22951 QYVVDLTSF 9 94 536.2718986641313 1070.5292443950625 2 536.2720336914062 MULTI HCD FTMS 0 0 0 19124 366999.0625 1 0 0 2 Unmodified _QYVVDLTSF_ ENSG00000135778|ENST00000366628|NTPCR;ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF 142.0795815696625 1.719916958814042E-05 1 ST{I|L}DVPQ{M(Oxidation (M))|F} 8 7 80.793 0 0 7.547 0 0 165.08180911869846 0 165.08180911869846 0 64.82360993705406 0 0 0 2.754432191740108 0 1.0114393726401687 1.084121882396211 ST{I|L}DVPQ{M(Oxidation (M))|F} 7.547 - 2796 + NaN NaN 291383.8 NaN 15434 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19127 78.898 NaN 431510 35 0 41936 0.261 + 15541 LPDPRELIEI 10 75 597.8400638520732 1193.6655747709463 2 597.84033203125 MULTI HCD FTMS 0 0 0 19124 185317.1875 0.29275444654616745 6 -0.17388153076171875 3 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 23.80106514851385 0.2884848839100546 1 D{[VA]|[{I|L}G]}{I|L}EDP{I|L}{I|L} 9 8 35.416 0 0 2.967 0 0 210.13763625312657 0 210.13763625312657 0 19.218356431693312 0 0 0 0.8252574989159953 0 0.3252574989159953 0 D{[VA]|[{I|L}G]}{I|L}EDP{I|L}{I|L} 2.967 - 760 NaN NaN 156883.8 NaN 15435 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19128 78.901 NaN 222610 35 0 23647 0.261 + 19770 NYAWVYYHL 9 51 614.7929789950731 1227.571405056946 2 614.79345703125 MULTI HCD FTMS 0 0 0 19124 94812.7734375 0.35563226581055735 66 -1.8804168701171875 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 53.832793166522166 0.026208976789938845 1 [YN]AWVYYH{I|L} 9 0 + 75.908 0 0 6.1836 6.1836 92.876 0 0 0 56.444021793654855 8.384767769392738 8.384767769392738 45.74031267727719 0 2.305462187404089 1.6989700043360187 0 0 + + [YN]AWVYYH{I|L};[WY]{[QG]|[NA]}VYYH{I|L} 6.1836;2.4575 +;- + 165 + NaN NaN 119567.5 NaN 15436 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19129 78.905 NaN 544820 35 0 101610 0.262 + 17464 LYSNIAFNL 9 66 527.7823461227249 1053.5501393122497 2 527.7817993164062 MULTI HCD FTMS 0 0 0 19124 205143.015625 0.7205927068020437 -2 0.05908966064453125 5 Unmodified _LYSNIAFNL_ ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 107.09958533191995 0.0034159042678574016 1 [Y{I|L}]SN{I|L}A{M(Oxidation (M))|F}N{I|L} 9 0 + 76.506 0 0 7.2618 7.2618 90.289 0 0 0 4.762036441594191 55.13128818850568 4.762036441594191 9.208187539523749 0 2.2059771852360797 0 0.3494850021680094 1.6549471895720984 + + [Y{I|L}]SN{I|L}A{M(Oxidation (M))|F}N{I|L};[Y{I|L}]SN{I|L}A{M(Oxidation (M))|F}GG{I|L};{I|L}YSN{I|L}A{M(Oxidation (M))|F}N{I|L};[Y{I|L}]SGG{I|L}A{M(Oxidation (M))|F}N{I|L};[Y{I|L}]SGG{I|L}A{M(Oxidation (M))|F}GG{I|L} 7.2618;6.3878;6.1175;5.1783;3.9471 +;-;+;-;- + 568 NaN NaN 168865.5 NaN 15437 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19130 78.908 NaN 275230 35 0 86609 0.261 + 467 ALPYFWEHF 9 63 605.2901000226736 1208.5656471121472 2 605.2909545898438 MULTI HCD FTMS 0 0 0 19124 55245.703125 0.05953766151015149 14 -0.40462493896484375 6 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 4.5288652416199255 0.31668488241058723 1 YY[YQ]{M(Oxidation (M))|F}YP 7 7 21.259 0 0 1.759 0 0 0 181.09844785861188 181.09844785861188 1.7951538106283493 0 0 0 0 0.3054621874040891 2 0 0 YY[YQ]{M(Oxidation (M))|F}YP 1.759 - 76 NaN NaN 124006.1 NaN 15438 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19131 78.911 NaN 297930 35 0 38735 0.261 + 10037 IFDLQSNTVL 10 78 575.3109843454829 1148.6074157577657 2 575.3106689453125 MULTI HCD FTMS 0 0 0 19124 107563.6171875 1 0 0 7 Unmodified _IFDLQSNTVL_ ENSG00000123352|ENST00000552918|SPATS2 30.7034409873982 0.22608124881558994 1 Q[NS]TV{I|L} 6 4 38.664 0 0 3.3661 0 0 488.26219374824376 0 488.26219374824376 0 26.585390679490075 0 0 0 1.1549471895720984 0 0.7742275032520141 0.3252574989159953 + Q[NS]TV{I|L} 3.3661 + + 111 NaN NaN 131358.8 NaN 15439 3690 19124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19133 78.916 NaN 1843400 35 0 272910 0.327 + 13743 KYPSPFFVF 9 108 566.297318493246 1130.580084053292 2 566.2976684570312 MULTI HCD FTMS 0 0 0 19132 959698.6875 0.011181942198938873 65 -1.8542709350585938 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 69.10491478415734 0.009377850133389008 1 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 73.72 0 0 6.5206 6.5206 89.92 0 0 0 8.89506772603255 36.92217394993633 8.89506772603255 10.230012720637376 0 2.7302046884880937 0 0.7302046884880937 0.3252574989159953 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}P[QT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][PS]{M(Oxidation (M))|F}AA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.5206;5.6157;4.9675;4.4576;4.3237;4.2387;4.1461;3.7762;3.7334;3.6836 +;-;-;-;-;-;-;-;-;- + 5920 NaN NaN 365582.7 NaN 15440 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19134 78.921 NaN 1180000 35 0 455790 0.264 + 8730 HHGAGAFF 8 37 422.19864156822445 842.3827302032489 2 422.19873046875 MULTI HCD FTMS 0 0 0 19132 528533.5 0.5698855341273487 7 -0.2002105712890625 2 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3028026903568 0 677.3028026903568 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 2 + NaN NaN 268825.5 NaN 15441 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19135 78.924 NaN 310960 35 0 23128 0.261 + 19276 NLPFDLSVL 9 81 509.2846847460505 1016.554816558901 2 509.80364990234375 MULTI HCD FTMS 0 0 0 19132 36848.640625 0.44385386799396115 -4 0.11466217041015625 3 Unmodified _NLPFDLSVL_ REV__ENSG00000204580|ENST00000376568|DDR1;REV__nc|ENSG00000204580|Q08345-2|DDR1;REV__nc|ENSG00000204580|Q08345-5|DDR1;REV__nc|ENSG00000204580|Q08345-6|DDR1 10.073929032068715 0.27331982688540024 1 V{I|L} 2 -1 22.519 0 0 2.2152 0 0 786.391946101892 0 786.391946101892 0 10.528871982441359 0 0 0 0.3054621874040891 0 0 0 V{I|L} 2.2152 + + 49 NaN NaN 140661.3 NaN 15442 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19136 78.927 NaN 552340 35 0 101120 0.261 + 16935 LYGVFTIHF 9 71 548.794908185714 1095.575263438228 2 548.794921875 MULTI HCD FTMS 0 0 0 19132 168497.484375 0.5850892784478409 -4 0.11466217041015625 4 Unmodified _LYGVFTIHF_ ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1 104.79918948944588 0.003791450360204016 1 {I|L}YGV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F} 9 0 + 102.74 0 0 9.3781 9.3781 96.187 0 0 0 87.17084689121528 7.504311474114331 7.504311474114331 18.60924374808178 0 2.829689690656103 2 0.7614393726401688 0 + + {I|L}YGV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};[Y{I|L}]GV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};{I|L}YR[KC]VV{[ES]|[DT]|[{I|L}C]};[Y{I|L}]K{M(Oxidation (M))|F}E{I|L}H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};{I|L}YG{[WT]|[RM]}[K{I|L}]{[ES]|[DT]|[{I|L}C]};[Y{I|L}]KA{[WT]|[RM]}[PA]{M(Oxidation (M))|F};[Y{I|L}]K{M(Oxidation (M))|F}[NP][PA]{M(Oxidation (M))|F};{I|L}YVVT{[MS]|[{M(Oxidation (M))|F}A]}H{M(Oxidation (M))|F};{I|L}[Q{I|L}][HD]GVV{[ES]|[DT]|[{I|L}C]} 9.3781;7.6795;6.2749;5.6259;5.0344;4.0552;3.8648;3.7508;3.516;2.1582 +;+;-;-;-;-;-;-;-;- + 625 + NaN NaN 167444.3 NaN 15443 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19137 78.931 NaN 350510 35 0 21912 0.261 + 34788 YQTPRLWLF 9 72 612.3323844797587 1222.6502160263174 2 612.3322143554688 MULTI HCD FTMS 0 0 0 19132 67686.8671875 0.03219867688067005 17 -0.49340057373046875 5 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 55.50274090549119 0.023872834264864425 1 [YQ]T[RP]{I|L}W{I|L}{M(Oxidation (M))|F} 9 0 + 54.266 0 0 4.4384 4.4384 60.683 0 0 0 14.2074145675533 46.47969238078217 14.2074145675533 0 0 1.4247425010840047 0 0.7887254899964358 0.7059771852360797 + + [YQ]T[RP]{I|L}W{I|L}{M(Oxidation (M))|F};[YQ]T[RP]W{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[WQ]{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{M(Oxidation (M))|F};[W{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KKT{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YQ]TKK[W{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.4384;4.4384;1.1193;0.50493;0.44017 +;-;-;-;- + 415 NaN NaN 135152.5 NaN 15444 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19138 78.934 NaN 187430 35 0 16262 0.261 -1 SYADQMFLL 9 64 552.257818473616 NaN 0 552.2571411132812 PEAK HCD FTMS 0 0 0 19132 61027.0625 0.47989576725252125 -4 0.11466217041015625 6 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 16.149105407346934 0.21324626030841579 1 {I|L}{M(Oxidation (M))|F} 2 -1 19.776 0 0 1.7938 0 0 131.09576212893506 708.2294405572874 839.3252026862224 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7938 - 53 + NaN NaN 109633.7 NaN 15445 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19139 78.937 NaN 383170 35 0 199120 0.261 + 14260 LCKVLGVLF 9 37 496.3038712465691 990.5931895599382 2 496.3038330078125 MULTI HCD FTMS 0 0 0 19132 77442.75 0.24668083475594885 6 -0.1706390380859375 7 Unmodified _LCKVLGVLF_ ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6;nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6 2.302733041254933 0.33356062215410776 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 18.672 0 0 1.8849 0 0 565.3531210558351 0 565.3531210558351 0 10.713337517843659 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8849 - 15 + NaN NaN 150924.2 NaN 15446 3691 19132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19141 78.942 NaN 822020 35 0 48528 0.327 + 30899 VQVAGKAER 9 83 479.2774935703601 956.5404342075202 2 479.2774658203125 MULTI HCD FTMS 0 0 0 19140 756252.375 0.7083890090219204 8 -0.22760009765625 1 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 1 Q 1 8 11.722 0 0 1.2254 0 0 458.2729756772517 367.1973136158853 825.4702892931371 0 0 0 0 0 0.7742275032520141 0 0 0 + Q 1.2254 + + 41 + NaN NaN 215395.8 NaN 15447 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19142 78.947 NaN 778290 35 0 236650 0.261 + 4908 FAIPLIEKL 9 69 522.3285503584551 1042.6425477837101 2 522.3287963867188 MULTI HCD FTMS 0 0 0 19140 287574 0.05599597633702968 9 -0.26705169677734375 2 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 67.83816525789305 0.009787749748478139 1 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 70.602 0 0 6.7714 6.7714 90.893 0 0 0 55.99784104805167 5.3744678127529255 5.3744678127529255 12.079569145996345 0 2.7302046884880937 0 0.6747425010840047 0 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E 6.7714;5.6129;4.387;3.768 +;+;-;- + 129 + NaN NaN 204877.7 NaN 15448 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19143 78.95 NaN 494150 35 0 102710 0.261 + 20068 NYIPRFWTF 9 79 622.3163957915608 1242.6182386499215 2 622.3167114257812 MULTI HCD FTMS 0 0 0 19140 190069.953125 0.013838472515696153 44 -1.2729644775390625 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 69.10491478415734 0.009377850133389008 1 [YN]{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 59.262 0 0 4.7691 4.7691 88.973 0 0 0 12.579566837793585 45.946535553355226 12.579566837793585 20.626470355332913 0 1.3807196863200843 1.6989700043360187 0.3494850021680094 0.7302046884880937 + + [YN]{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[YN]{I|L}[RP]{[HG]|PP}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VPHPVWT{M(Oxidation (M))|F};{[WT]|[RM]}{[VA]|[{I|L}G]}HPVWT{M(Oxidation (M))|F};[QP]{M(Oxidation (M))|F}[HA][{I|L}P]WT{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YR][{I|L}P]WT{M(Oxidation (M))|F} 4.7691;3.1092;2.6009;1.2065;0.95858;0.575;0.33825 +;-;-;-;-;-;- + 509 NaN NaN 158153.4 NaN 15449 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19144 78.954 NaN 149850 35 0 13058 0.262 + 34569 YPLLLKEIL 9 55 551.3496997816405 1100.684846630081 2 551.349853515625 MULTI HCD FTMS 0 0 0 19140 63042.70703125 0.06885462712865312 16 -0.467193603515625 4 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 47.594388314883695 0.03493607795751234 1 YP{I|L}{I|L}{I|L} 5 4 56.815 0 0 5.1618 0 0 0 498.2939116013906 498.2939116013906 15.669015600442577 0 0 0 0 1.5044321917401078 1.5228787452803376 0 0 + YP{I|L}{I|L}{I|L} 5.1618 + + 209 + NaN NaN 105943.1 NaN 15450 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19145 78.957 NaN 180120 35 0 14774 0.261 + 33988 YLVLERYLW 9 69 627.8481914306448 1253.6818299280894 2 627.8482666015625 MULTI HCD FTMS 0 0 0 19140 42403.27734375 0.4655883925514703 5 -0.14443206787109375 5 Unmodified _YLVLERYLW_ ENSG00000147262|ENST00000682440|GPR119 22.736283301280096 0.1639198954644489 1 [Y{I|L}]{M(Oxidation (M))|F} 3 7 28.952 0 0 2.3094 0 0 0 827.4433099908425 827.4433099908425 0.5360498482393439 0 0 0 0 0.5 2 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.3094 - 75 NaN NaN 108309.5 NaN 15451 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19146 78.96 NaN 195760 35 0 15331 0.261 + 25917 SPAEFFELM 9 73 543.7439012201859 1085.4732495071717 2 544.2474365234375 MULTI HCD FTMS 0 0 0 19140 41036.9921875 0.7667091883558542 -7 0.19647979736328125 6 Oxidation (M) _SPAEFFELM(Oxidation (M))_ ENSG00000087157|ENST00000262764|PGS1;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;nc|ENSG00000087157|Q32NB8-2|PGS1;nc|ENSG00000087157|Q32NB8-3|PGS1;PGS1|p.D279Afs*32|1|0.23|ENSG00000087157|chr17:78400811-78400811|A/-|frameshift_variant;PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant 64.23631603340823 0.01165516075559909 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5 4 49.068 0 0 4.5204 0 0 384.1616368211722 0 384.1616368211722 0 37.38560627359831 0 0 0 1.805462187404089 0 0.3054621874040891 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 4.5204 + + 193 + NaN NaN 108973.4 NaN 15452 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19147 78.964 NaN 93715 35 0 6241.4 0.262 + 20619 PEVRRSVA 8 54 457.26422640481616 912.5138998764323 2 457.26483154296875 MULTI HCD FTMS 0 0 0 19140 33860.70703125 0.50575498290256 -4 0.11144256591796875 7 Unmodified _PEVRRSVA_ REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF 5.230669730166228 0.5342319408533849 1 [EP]V[MD]{I|L}D 7 -1 30.545 0 0 3.3474 0 0 0 110.14796905051358 110.14796905051358 29.831976630838138 0 0 0 0 0 1.154901959985743 0 0 [EP]V[MD]{I|L}D 3.3474 - 23 NaN NaN 106229.1 NaN 15453 3692 19140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19149 78.969 NaN 2106000 35 0 377150 0.327 + 26916 SYLDSIHFF 9 104 564.7719984179613 1127.5294439027225 2 564.7720336914062 MULTI HCD FTMS 0 0 0 19148 941729.625 0.7755997464576078 1 -0.0295867919921875 1 Unmodified _SYLDSIHFF_ CREBBP|p.I1431V|1|0.34|ENSG00000005339|chr16:3738662-3738662|T/C|missense_variant;ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP 120.45040980043947 0.0012363446172167195 1 SY{I|L}D{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 103.64 0 0 9.1916 9.1916 97.376 0 0 0 76.57592227982585 14.973024840566467 14.973024840566467 35.23866405091114 0 2.6989700043360187 2 0.805462187404089 0 + + SY{I|L}D{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YD{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};SY{[QD]|[EN]|[WG]|[KD]|[RS]}RD{I|L}TM;{NN|[MP]|[D{I|L}]|[EV]}YS{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]H{[TV]|[{I|L}S]}D{I|L}TM;SY{[QD]|[EN]|[WG]|[KD]|[RS]}[VG]D{I|L}TM;{[TV]|[{I|L}S]}DY{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}SY{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YDR{[QD]|[EN]|[WG]|[KD]|[RS]}[MT] 9.1916;6.0663;6.0499;5.391;4.892;4.8101;4.5743;4.5736;4.5142;3.3547 +;+;-;-;-;-;-;-;-;- + 2686 + NaN NaN 404313.8 NaN 15454 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19150 78.973 NaN 1994800 35 0 227830 0.261 + 7906 FYVRGLFSF 9 98 568.3002305950665 1134.585908256933 2 568.3005981445312 MULTI HCD FTMS 0 0 0 19148 630408.8125 0.6646867059245279 -2 0.0523529052734375 2 Unmodified _FYVRGLFSF_ ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2 103.35351024395868 0.004027461563756449 1 {M(Oxidation (M))|F}YV{[NV]|[RG]}{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 86.966 0 0 7.665 7.665 88.435 0 0 0 34.63615337528019 14.973024840566467 14.973024840566467 5.1632867885674045 0 2.805462187404089 0 2.110924374808178 0 + + {M(Oxidation (M))|F}YV{[NV]|[RG]}{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}A{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}A{I|L}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}A{I|L}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}A{I|L}S{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[Q{I|L}]{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}A{I|L}S{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}YG[RV]{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RVV{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7.665;7.2099;7.175;6.5039;6.469;6.4189;6.4037;6.384;6.3778;6.2603 +;-;-;-;-;-;-;-;-;- + 6352 + NaN NaN 407597.2 NaN 15455 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19151 78.977 NaN 900240 35 0 71382 0.261 + 6410 FPHLTVVLL 9 84 519.8211470376159 1037.6277411420317 2 519.8209838867188 MULTI HCD FTMS 0 0 0 19148 123711.578125 0.022921521632593318 17 -0.49671173095703125 3 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 63.562846038646086 0.012597299157545023 1 {I|L}C{I|L}TVV{I|L}{I|L} 8 3 55.761 0 0 5.3739 0 0 165.07864577461095 0 165.07864577461095 0 48.77095041825613 0 0 0 1.8098943791441968 0 1.110924374808178 0 {I|L}C{I|L}TVV{I|L}{I|L} 5.3739 - 338 NaN NaN 215006.6 NaN 15456 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19152 78.98 NaN 275660 35 0 22566 0.261 + 26646 SYADNILSF 9 60 515.2479531862327 1028.4813534392654 2 515.2481689453125 MULTI HCD FTMS 0 0 0 19148 74442.9921875 0.4021254272056438 1 -0.0295867919921875 4 Unmodified _SYADNILSF_ ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion 118.0683919894846 0.0016252157255221692 1 {[{M(Oxidation (M))|F}C]|[YS]}ADN{I|L}{I|L}S{M(Oxidation (M))|F} 9 0 + 84.747 0 0 8.24 8.24 87.327 0 0 0 0.7918124604762511 16.478174818886373 0.7918124604762511 0.7918124604762511 0 2.3494850021680094 0 1.0356668758921828 1.2302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}ADN{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDN{I|L}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}ADGG{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDGG{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SK[NG]RS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}A][VG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SD[{I|L}A][VG]S{M(Oxidation (M))|F};EE[YE]KKG{M(Oxidation (M))|F} 8.24;8.163;6.1486;6.0716;4.2236;3.0133;2.9363;1.5988 +;-;-;-;-;-;-;- + 460 NaN NaN 121853.6 NaN 15457 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19153 78.983 NaN 136150 35 0 25925 0.261 + 24959 RYTFYVLEF 9 48 619.3163286234789 1236.6181043137576 2 619.3150634765625 MULTI HCD FTMS 0 0 0 19148 45393.51953125 0.02897974856718496 19 -0.5525054931640625 5 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 23.789781309258295 0.1548179064208189 1 YV{I|L}E{M(Oxidation (M))|F} 5 4 49.196 0 0 3.9783 0 0 567.2814198224625 0 567.2814198224625 0 45.21652514092061 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + YV{I|L}E{M(Oxidation (M))|F} 3.9783 + + 63 NaN NaN 105216.7 NaN 15458 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19154 78.986 NaN 52656 35 0 9338.7 0.264 + 20482 PCPGARHH 8 31 437.70911506485083 873.4036771965017 2 437.708984375 MULTI HCD FTMS 0 0 0 19148 44877.0625 0.22800847403133004 6 -0.1784820556640625 6 Unmodified _PCPGARHH_ REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.6721 0 0 708.3247262461095 0 708.3247262461095 0 7.525749891599531 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6721 - 8 + NaN NaN 86633.6 NaN 15459 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19155 78.99 NaN 301460 35 0 24429 0.261 + -1 LYCDLSISI 9 61 542.2730029804914 1082.5314530277826 2 542.7765502929688 MULTI HCD FTMS 0 0 0 19148 48938.6328125 0.3222563036843476 -8 0.222625732421875 7 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))DLSISI_ REV__ENSG00000171094|ENST00000389048|ALK 21.74664581756881 0.17247014374749275 1 {I|L}SGVNYNW 8 -1 60.827 0 0 5.6189 0 0 131.0972984004822 0 131.0972984004822 0 9.100555822904397 0 0 0 0.3807196863200844 0 0.5 0.566901560044258 {I|L}SGVNYNW 5.6189 - 851 + NaN NaN 129358.1 NaN 15460 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19156 78.993 NaN 117630 35 0 14893 0.261 + 32501 WFLLSALF 8 51 498.7815238308788 NaN 0 498.7817687988281 PEAK HCD FTMS 0 0 0 19148 33668.51171875 0.23610653643241244 8 -0.24090576171875 8 Unmodified _WFLLSALF_ REV__ENSG00000205413|ENST00000379958|SAMD9 10.183394434864962 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.7021 0 0 261.1175998084389 632.3388155572874 893.4564153657263 0 0 0 0 0 0 0 0 0 V 0.7021 - 34 + NaN NaN 102033.7 NaN 15461 3693 19148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19158 78.998 NaN 458120 35 0 20521 0.327 + 23875 RSSEKLVR 8 74 487.79078151675463 973.5670101003093 2 487.7907409667969 MULTI HCD FTMS 0 0 0 19157 378511.90625 0.6098422686949393 10 -0.296539306640625 1 Unmodified _RSSEKLVR_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 4.3292370932331545 0.5355693454741696 1 A 1 8 5.8412 0 0 0.59998 0 0 105.07918026276577 794.4376925104124 899.5168727731782 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.59998 - 86 + NaN NaN 154465.7 NaN 15462 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19159 79.003 NaN 267980 35 0 38331 0.261 + 18289 MPDVELNL 8 46 465.7336810963631 929.4528092595262 2 465.733642578125 MULTI HCD FTMS 0 0 0 19157 184257.796875 0.37260879450988976 10 -0.296539306640625 2 Unmodified _MPDVELNL_ ENSG00000124942|ENST00000378024|AHNAK 42.09456458481378 0.20402248593209013 1 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L} 8 3 + 42.925 0 0 4.6183 4.6183 86.318 0 0 0 0.31743128760552963 32.467072242602484 0.31743128760552963 9.262137858390808 0 0.8807196863200843 0 0.3494850021680094 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}GG{I|L} 4.6183;3.6218 -;- 57 NaN NaN 130799.4 NaN 15463 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19160 79.006 NaN 566390 35 0 85695 0.261 + 20069 NYIPRFWTF 9 90 622.3163957915608 1242.6182386499215 2 622.31689453125 MULTI HCD FTMS 0 0 0 19157 186278.96875 0.013562461330243976 46 -1.3299942016601562 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 57.72198328787511 0.020768266150574023 1 [YN]{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 63.202 0 0 5.0862 5.0862 90.605 0 0 0 20.014028070420338 49.52947800538006 20.014028070420338 35.208574303152176 0 1.6307196863200843 1.6989700043360187 0.3054621874040891 0.6549471895720984 + + [YN]{I|L}[RP]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}[RP]{[HG]|PP}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YC]|[HE]}{[DA]|[EG]}{M(Oxidation (M))|F}[RP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YC]|[HE]}P[{M(Oxidation (M))|F}E]{[NV]|[RG]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[QP][HK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.0862;2.2527;1.7076;1.704;1.235 +;-;-;-;- + 354 NaN NaN 174550.8 NaN 15464 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19161 79.009 NaN 302580 35 0 85205 0.261 + 30024 VFPFRTFYL 9 54 595.3239615237284 1188.6333701142566 2 595.3241577148438 MULTI HCD FTMS 0 0 0 19157 123258.125 0.49043936317214765 7 -0.2113189697265625 4 Unmodified _VFPFRTFYL_ ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 13.90604991867851 0.24021115267848145 1 SY{I|L} 3 7 27.435 0 0 2.3081 0 0 807.4351063459 0 807.4351063459 0 17.998037644757048 0 0 0 0.4247425010840047 0 0 0 SY{I|L} 2.3081 - 20 NaN NaN 135313.6 NaN 15465 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19162 79.013 NaN 205660 35 0 27530 0.261 + 32266 VYTVVDEMFL 10 61 616.299301352522 1230.5840497718439 2 616.2999877929688 MULTI HCD FTMS 0 0 0 19157 74955.2890625 0.017162802842275584 -33 0.9402389526367188 5 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 78.7280429016045 0.0072433801744089844 1 {M(Oxidation (M))|F}EDV{I|L}A{M(Oxidation (M))|F}{I|L} 8 7 67.758 0 0 5.5061 0 0 278.16243178535314 0 278.16243178535314 0 50.76782832741429 0 0 0 2.6677353201839438 0 0.9476212463643423 0 {M(Oxidation (M))|F}EDV{I|L}A{M(Oxidation (M))|F}{I|L} 5.5061 - 282 NaN NaN 101675.9 NaN 15466 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19163 79.016 NaN 411420 35 0 132440 0.261 -1 LYPQFMFHL 9 57 606.2990095347391 1210.583466136278 2 606.2998046875 MULTI HCD FTMS 0 0 0 19157 109343.7265625 0.7277911336758536 9 -0.27365875244140625 6 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 19.438996006549623 0.19240772610395238 1 [Y{I|L}][QP]{M(Oxidation (M))|F} 5 -1 28.34 0 0 2.341 0 0 0 559.2329805963499 559.2329805963499 21.35029351276792 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}][QP]{M(Oxidation (M))|F} 2.341 + + 55 + NaN NaN 143407.5 NaN 15467 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19164 79.019 NaN 126540 35 0 5884.4 0.263 + 26254 SQKQRSFV 8 66 490.2686512029637 NaN 0 490.26873779296875 PEAK HCD FTMS 0 0 0 19157 47608.83203125 0.3454313434620959 9 -0.27365875244140625 7 Unmodified _SQKQRSFV_ ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4 7.910154910731844 0.38822285293237185 1 {M(Oxidation (M))|F}N 2 7 5.0886 0 0 0.52003 0 0 171.09342210248832 543.3017061822874 714.3951282847756 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 0.52003 - 21 + NaN NaN 97583.4 NaN 15468 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19165 79.023 NaN 151850 35 0 27124 0.261 + 24244 RYFLPPYTF 9 40 602.3135793626778 NaN 0 602.314208984375 PEAK HCD FTMS 0 0 0 19157 60476.06640625 0.4431606204505677 10 -0.296539306640625 8 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 29.081581746732265 0.1264406993618811 1 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P 4 6 18.5 0 0 1.5383 0 0 165.0788301350829 576.2940704984466 741.3729006335295 0 0 0 0 0 1.2302046884880937 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P 1.5383 - 14 + NaN NaN 94481.4 NaN 15469 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19166 79.026 NaN 167210 35 0 18399 0.261 + 35604 YYIFIPSKF 9 53 589.3188011551375 NaN 0 589.3180541992188 PEAK HCD FTMS 0 0 0 19157 59729.2734375 0.24284380214194712 60 -1.7166290283203125 9 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 G{I|L} 2 8 16.454 0 0 1.3984 0 0 680.3797516636524 323.10385315182657 1003.483604815479 0 0 0 0 0 1 0 0 0 G{I|L} 1.3984 - 22 + NaN NaN 111284.8 NaN 15470 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19167 79.029 NaN 168230 35 0 17437 0.261 -1 0 59 505.3386522952343 504.3313758286343 1 505.33856201171875 MULTI HCD FTMS 0 0 0 19157 32804.65625 0.07712224683050957 11 -0.332794189453125 10 NaN NaN 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L} 4 -1 + 23.416 0 0 4.6431 4.6431 89.05 0 0 0 1.3380312008851547 23.416375079047498 1.3380312008851547 23.416375079047498 0 0.5 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L} 4.6431 - 9 NaN NaN 106662.5 NaN 15471 3694 19157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19169 79.034 NaN 3742900 35 0 1448800 0.327 -1 CGRGAPHA 8 70 413.1929484024883 824.3713438717766 2 413.1936340332031 MULTI HCD FTMS 0 0 0 19168 2685923.5 0.7769159434576521 8 -0.23740386962890625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L}G{I|L} 3 -1 22.527 0 0 2.7326 0 0 155.0941986348958 383.05317102603755 538.1473696609334 0 0 0 0 0 1.2059771852360797 0 0 0 {I|L}G{I|L} 2.7326 - 10 + NaN NaN 665559.8 NaN 15472 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19170 79.039 NaN 1762000 35 0 256630 0.261 + 20184 NYLDRFLSL 9 97 570.8060184248639 1139.5974839165276 2 570.8060913085938 MULTI HCD FTMS 0 0 0 19168 1710994.375 0.050208050844871344 12 -0.35565948486328125 2 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 155.95374464489888 2.532374632554729E-06 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 115.02 0 0 10.093 10.093 95.964 0 0 0 9.578095681520566 9.578095681520566 9.578095681520566 14.088709367037282 0 2.8494850021680094 1.6989700043360187 0.3252574989159953 1.7689301784845295 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV]QDR{M(Oxidation (M))|F}S{I|L}{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}S{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]DR{M(Oxidation (M))|F}S{I|L}{I|L} 10.093;8.8568;7.6459;7.1831;6.5312;6.4798;6.4096;5.8981;5.2949;5.2435 +;-;-;-;-;-;-;-;-;- + 2750 NaN NaN 362208.8 NaN 15473 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19171 79.042 NaN 1402800 35 0 431870 0.261 + 20419 PAAVAFKIIF 10 79 538.8288546804187 1075.6431564276372 2 538.8289794921875 MULTI HCD FTMS 0 0 0 19168 942327.75 0.8974287181589682 1 -0.029541015625 3 Unmodified _PAAVAFKIIF_ ENST00000578270.5_1_18:19239172-19243683:-|nuORF 15.847184025352803 0.36288280428275715 1 [QA]P{I|L} 4 8 28.46 0 0 2.6459 0 0 0 663.3905844430336 663.3905844430336 2.7418227366565873 0 0 0 0 1 1.154901959985743 0 0 [QA]P{I|L} 2.6459 - 101 + NaN NaN 302753.7 NaN 15474 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19172 79.046 NaN 1030100 35 0 145750 0.261 + 13435 KYPENFFLL 9 81 585.8132425088911 1169.6119320845821 2 585.8134765625 MULTI HCD FTMS 0 0 0 19168 903811.125 0.004558744050705442 128 -3.6541061401367188 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 86.33184430468982 0.004622086694044132 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 78.452 0 0 6.7075 6.7075 89.241 0 0 0 8.147124887093824 45.071297076834604 8.147124887093824 9.208187539523749 0 2.548455006504028 0 0 1.7104093769761874 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L} 6.7075;5.9203;5.6147;4.8775;4.8275;4.0902;3.8388;3.6976;3.6033;3.0516 +;-;-;-;-;-;-;-;-;- + 1556 NaN NaN 254312.6 NaN 15475 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19173 79.049 NaN 746540 35 0 63671 0.261 + 24448 RYLDLFTSF 9 71 581.3004901821857 1160.5864274311714 2 581.3010864257812 MULTI HCD FTMS 0 0 0 19168 450474.65625 0.050526991540038306 12 -0.35565948486328125 5 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 103.41943736471063 0.004016698775839292 1 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 89.843 0 0 7.7412 7.7412 92.148 0 0 0 54.68765315847925 12.25772496747986 12.25772496747986 10.426740567922437 0 2.8494850021680094 0 1.5484550065040281 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YR]{I|L}{I|L}D{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[NP]AA{M(Oxidation (M))|F}{I|L}D{I|L}PG{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{[WT]|[RM]}{I|L}{M(Oxidation (M))|F};[YR]{I|L}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}T{[ES]|[DT]|[{I|L}C]};[YR][{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F}T{[ES]|[DT]|[{I|L}C]} 7.7412;6.8428;6.7499;5.8859;5.6777;3.899;2.7812;1.0855;0.39526 +;-;-;-;-;-;-;-;- + 863 + NaN NaN 195269.6 NaN 15476 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19174 79.052 NaN 362200 35 0 16222 0.262 + 14106 LAAAKQGSKQ 10 77 501.29058431079056 1000.5666156883811 2 501.29071044921875 MULTI HCD FTMS 0 0 0 19168 329627.40625 0.579461895439644 8 -0.23740386962890625 6 Unmodified _LAAAKQGSKQ_ REV__ENST00000373068.6_3_9:130870893-130871202:+|nuORF 5.731851221503515 0.44496410492002586 1 V 1 -1 7.3464 0 0 0.73422 0 0 674.3725371745124 224.09746729068596 898.4700044651984 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.73422 - 126 + NaN NaN 154736.6 NaN 15477 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19175 79.056 NaN 454010 35 0 47337 0.261 + 13143 KYLLTPVNFF 10 79 621.3503454857671 1240.686138038334 2 621.350341796875 MULTI HCD FTMS 0 0 0 19168 376971.53125 1 0 0 7 Unmodified _KYLLTPVNFF_ ENSG00000118655|ENST00000650450|DCLRE1B 37.07464296494664 0.1707926854601146 1 [Y{I|L}]K[VP][{I|L}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 5 + 40.532 0 0 3.2669 3.2669 59.423 0 0 0 0 15.108084012482905 0 0 0 1.305462187404089 0 0 0.3252574989159953 [Y{I|L}]K[VP][{I|L}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}[VP][{I|L}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}[VP]{[CP]|[EA]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[VP]{[CP]|[EA]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2669;3.2669;2.2322;2.2322 -;-;-;- 462 NaN NaN 166693.6 NaN 15478 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19176 79.059 NaN 231040 35 0 48216 0.261 + 6074 FPEEAVLQQAF 11 44 639.8219216600472 1277.6292903868944 2 639.8223266601562 MULTI HCD FTMS 0 0 0 19168 82654.9609375 0.6844229758554062 -1 0.0362548828125 8 Unmodified _FPEEAVLQQAF_ ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF 46.0223103267499 0.09816448733256712 1 V{I|L}QQA{M(Oxidation (M))|F} 6 5 66.899 0 0 5.2362 0 0 573.2424183576187 0 573.2424183576187 0 66.89896278884483 0 0 0 2.4247425010840047 0 0 0 + V{I|L}QQA{M(Oxidation (M))|F} 5.2362 + + 311 NaN NaN 134174.5 NaN 15479 3695 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19178 79.064 NaN 1563400 35 0 219520 0.327 + 32298 VYVAIQAVL 9 84 488.2973861810708 974.5802194289416 2 488.2978210449219 MULTI HCD FTMS 0 0 0 19177 1026396 0.4957057223590401 -5 0.147735595703125 1 Unmodified _VYVAIQAVL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 74.42276476219924 0.007657080072768255 1 [YV]VA{I|L}QAV{I|L} 9 0 + 85.473 0 0 8.7702 8.7702 91.215 0 0 0 14.76203644159419 62.796517645449 14.76203644159419 7.7815125038364386 0 2.56295299324845 1 0 0 + + [YV]VA{I|L}QAV{I|L};[YV]VA{I|L}QA{I|L}V;[YV]VA{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QAV{I|L};[YV]VA{I|L}[AG]A{I|L}V;{[VA]|[{I|L}G]}[YV]{I|L}QA{I|L}V;{[VA]|[{I|L}G]}[Y{I|L}]VQAV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}[AG]AV{I|L};[YV][{I|L}A]VQAV{I|L};{[VA]|[{I|L}G]}[Y{I|L}]VQA{I|L}V 8.7702;7.9717;7.8254;7.063;7.0269;6.2646;6.2189;6.1182;5.7979;5.4204 +;-;-;-;-;-;-;-;-;- + 695 NaN NaN 321456.1 NaN 15480 3696 19177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19179 79.068 NaN 1048800 35 0 391360 0.261 + 8731 HHGAGAFF 8 32 422.19864156822445 842.3827302032489 2 422.19879150390625 MULTI HCD FTMS 0 0 0 19177 563620.75 0.6077179822263051 12 -0.34566497802734375 2 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3036724413333 0 677.3036724413333 0 10 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 4 + NaN NaN 246777.9 NaN 15481 3696 19177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19180 79.072 NaN 272980 35 0 45084 0.261 + 17465 LYSNIAFNL 9 56 527.7823461227249 1053.5501393122497 2 527.7822265625 MULTI HCD FTMS 0 0 0 19177 156684.84375 0.5503767960546074 4 -0.10607147216796875 3 Unmodified _LYSNIAFNL_ ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 60.07390631473393 0.0174780869009295 1 D{M(Oxidation (M))|F}A[TP]{M(Oxidation (M))|F}N{I|L} 8 6 54.773 0 0 5.1989 0 0 130.10532837650595 0 130.10532837650595 0 43.97074875644661 0 0 0 0.6989700043360187 0 0.6382104921644451 1.5994850021680094 D{M(Oxidation (M))|F}A[TP]{M(Oxidation (M))|F}N{I|L} 5.1989 - 118 + NaN NaN 116610.9 NaN 15482 3696 19177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19181 79.075 NaN 476070 35 0 74485 0.261 -1 EVSVCIVVI 9 81 509.2846847460505 1016.554816558901 2 509.8036804199219 MULTI HCD FTMS 0 0 0 19177 70600.2421875 0.8504028926096188 1 -0.0229034423828125 4 Carbamidomethyl (C) _EVSVC(Carbamidomethyl (C))IVVI_ ENST00000413432.2_1_2:242383334-242383583:+|nuORF 15.847184025352803 0.2234401846867398 1 VV{I|L} 3 -1 31.312 0 0 3.0802 0 0 687.3229847638687 0 687.3229847638687 0 25.598943791441968 0 0 0 0.75 0 0 0 VV{I|L} 3.0802 + + 146 NaN NaN 157365.9 NaN 15483 3696 19177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19182 79.079 NaN 388790 35 0 60323 0.261 + 15745 LPFLEHLEL 9 69 555.8132181338738 1109.6118833345474 2 555.8133544921875 MULTI HCD FTMS 0 0 0 19177 159537.546875 0.5093365029009086 -3 0.0953826904296875 5 Unmodified _LPFLEHLEL_ ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18 68.08070601005525 0.009709267492204555 1 {I|L}P{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L} 9 0 + 81.493 0 0 7.3443 7.3443 88.101 0 0 0 52.86770580297059 17.904849854573683 17.904849854573683 5.6246936830414995 0 2.079689690656103 2 1.2614393726401687 0 + + {I|L}P{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L};{I|L}P{M(Oxidation (M))|F}E{I|L}H{I|L}E{I|L};{I|L}P{M(Oxidation (M))|F}{I|L}[KA]SST{M(Oxidation (M))|F};{I|L}P{M(Oxidation (M))|F}{I|L}[KA]STS{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}P{I|L}EH{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}{I|L}PE[H{I|L}]E{I|L};{I|L}{M(Oxidation (M))|F}PE{I|L}H{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}P{I|L}[KA]SST{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{I|L}P[KA]SST{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PE{I|L} 7.3443;6.8374;5.6753;5.5166;5.0195;4.6442;4.5126;4.1839;4.1632;4.1067 +;-;-;-;-;-;-;-;-;- + 736 + NaN NaN 146288 NaN 15484 3696 19177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19183 79.082 NaN 371090 35 0 70699 0.261 + 1425 AYQLMVDVF 9 62 551.2678568423767 1100.5211607515532 2 551.2679443359375 MULTI HCD FTMS 0 0 0 19177 214823.84375 0.2940623418600065 -6 0.17388153076171875 6 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 78.7280429016045 0.006263961847259105 1 {I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 6 3 78.053 0 0 7.0923 0 0 362.16010827461133 0 362.16010827461133 0 49.090431028154846 0 0 0 2.8494850021680094 0 0.9916440611282625 0 + {I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 7.0923 + + 588 + NaN NaN 136074.3 NaN 15485 3696 19177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19185 79.087 NaN 1301200 35 0 213460 0.327 + 13744 KYPSPFFVF 9 99 566.297318493246 1130.580084053292 2 566.297607421875 MULTI HCD FTMS 0 0 0 19184 643928.5625 0.007502742329342612 71 -2.0431900024414062 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 69.10491478415734 0.009377850133389008 1 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 75.225 0 0 6.6537 6.6537 90.349 0 0 0 9.449689600073441 54.41331852044079 9.449689600073441 10.784634594678266 0 2.8494850021680094 0 0.7059771852360797 0.3807196863200844 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS][YK]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]QV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 6.6537;5.6998;5.0126;4.5086;4.2839;3.8618;3.8618;3.7999;3.7809;3.719 +;-;-;-;-;-;-;-;-;- + 2517 NaN NaN 280616.4 NaN 15486 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19186 79.091 NaN 659780 35 0 34350 0.261 + 30900 VQVAGKAER 9 88 479.2774935703601 956.5404342075202 2 479.27752685546875 MULTI HCD FTMS 0 0 0 19184 587769.5625 0.5505695078479889 13 -0.37842559814453125 2 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 1 Q 1 8 10.529 0 0 1.1007 0 0 458.2726105235464 367.19738438753075 825.4699949110772 0 0 0 0 0 0.6549471895720985 0 0 0 + Q 1.1007 + + 37 + NaN NaN 181376.2 NaN 15487 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19187 79.095 NaN 239200 35 0 27521 0.261 + 33781 YLGENKLLF 9 64 548.8058635572296 1095.597174181259 2 548.795166015625 MULTI HCD FTMS 0 0 0 19184 6128.3896484375 0.06452731668687103 -7 0.19678497314453125 3 Unmodified _YLGENKLLF_ REV__ENST00000291232.4_2_22:42318247-42318586:-|nuORF 18.13498045792455 0.20367413111508956 1 [Y{I|L}]GV{M(Oxidation (M))|F}T{I|L}H 8 -1 42.075 0 0 3.8404 0 0 0 162.05576502017814 162.05576502017814 7.382287586051106 0 0 0 0 0.3494850021680094 2 0.3252574989159953 0 [Y{I|L}]GV{M(Oxidation (M))|F}T{I|L}H 3.8404 - 648 + NaN NaN 116838.5 NaN 15488 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19188 79.098 NaN 303150 35 0 65048 0.261 + 28274 TLMPDVEVI 9 63 508.77030681012627 1015.5260606870526 2 509.28436279296875 MULTI HCD FTMS 0 0 0 19184 11248.2177734375 0.35840509727821634 -1 0.0229034423828125 4 Unmodified _TLMPDVEVI_ REV__ENSG00000084234|ENST00000338167|APLP2;REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF;REV__nc|ENSG00000084234|Q06481-2|APLP2;REV__nc|ENSG00000084234|Q06481-4|APLP2;REV__nc|ENSG00000084234|Q06481-5|APLP2;REV__nc|ENSG00000084234|Q06481-6|APLP2;REV__nc|ENSG00000084234|Q06481|APLP2 7.289230182591677 0.29575926068275815 1 VV{[QC]|[C(Carbamidomethyl (C))A]}PEV{I|L} 8 -1 16.86 0 0 1.6602 0 0 130.0665387665171 0 130.0665387665171 0 11.375175252488251 0 0 0 0.3494850021680094 0 0 0 VV{[QC]|[C(Carbamidomethyl (C))A]}PEV{I|L} 1.6602 - 33 + NaN NaN 131639 NaN 15489 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19189 79.101 NaN 451950 35 0 114220 0.261 + 4909 FAIPLIEKL 9 67 522.3285503584551 1042.6425477837101 2 522.328857421875 MULTI HCD FTMS 0 0 0 19184 127826.8515625 0.0248902520927857 14 -0.4179840087890625 5 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 43.77239144664712 0.04802738721622131 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]{I|L}EK{I|L} 9 0 + 47.189 0 0 4.5259 4.5259 87.497 0 0 0 7.147642715192504 33.21001883029645 7.147642715192504 13.789850105233292 0 2.0356668758921828 0 0 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]E{I|L}K{I|L} 4.5259;3.2034 +;- + 139 NaN NaN 165040.8 NaN 15490 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19190 79.105 NaN 508520 35 0 81862 0.261 + 3193 EDALYFPVL 9 65 533.7767531182328 1065.5389533032655 2 533.7766723632812 MULTI HCD FTMS 0 0 0 19184 99742.078125 0.5170227298295512 -1 0.0229034423828125 6 Unmodified _EDALYFPVL_ ENSG00000179292|ENST00000327259|TMEM151A 18.13498045792455 0.20367413111508956 1 [YV][{I|L}V]VVYV 8 7 30.099 0 0 2.8248 0 0 0 127.95368788469843 127.95368788469843 4.129712596891153 0 0 0 0 0 1.3979400086720375 0 0 [YV][{I|L}V]VVYV 2.8248 - 89 NaN NaN 177148.5 NaN 15491 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19191 79.108 NaN 361320 35 0 61849 0.261 + 3780 EPDSWHWLL 9 71 591.7826254583432 1181.5506979834863 2 591.7828979492188 MULTI HCD FTMS 0 0 0 19184 78319.8671875 0.23511787998032926 -4 0.1182861328125 7 Unmodified _EPDSWHWLL_ ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 24.67388899826682 0.14717941214954053 1 DSWH{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 8 4 25.812 0 0 2.1846 0 0 208.08490187812657 0 208.08490187812657 0 11.542294029922997 0 0 0 0 0 0.5 0 DSWH{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 2.1846 - 212 NaN NaN 147384.9 NaN 15492 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19192 79.111 NaN 302480 35 0 27102 0.261 + 19771 NYAWVYYHL 9 63 614.7929789950731 1227.571405056946 2 614.7926025390625 MULTI HCD FTMS 0 0 0 19184 107646.4375 0.4037699255764854 73 -2.099090576171875 8 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.0072241045649327805 1 [YN]AWVYYH{I|L} 9 0 + 103.04 0 0 8.394 8.394 97.695 0 0 0 33.46787486224656 88.43880628309982 33.46787486224656 103.0429000528617 0 2.3807196863200843 1.6989700043360187 0 1.4163865622122673 + + [YN]AWVYYH{I|L} 8.394 + + 269 NaN NaN 138728.6 NaN 15493 3697 19184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19194 79.116 NaN 242340 35 0 14051 0.327 + 34789 YQTPRLWLF 9 61 612.3323844797587 1222.6502160263174 2 612.3330078125 MULTI HCD FTMS 0 0 0 19193 38140.41015625 0.0181434123596743 24 -0.6833419799804688 1 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 29.081581746732265 0.1154664336125038 1 {I|L}{M(Oxidation (M))|F} 2 7 18.826 0 0 1.5398 0 0 944.4911136021872 0 944.4911136021872 0 -0.12665603828445526 -0.12665603828445526 0 0 0.3252574989159953 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.5398 + + 23 NaN NaN 114201 NaN 15494 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19195 79.121 NaN 249460 35 0 112900 0.263 + 33574 YIMKKPLV 8 51 496.3038712465691 990.5931895599382 2 496.3038330078125 MULTI HCD FTMS 0 0 0 19193 132311.859375 0.4214571398708945 13 -0.3884124755859375 2 Unmodified _YIMKKPLV_ ENST00000366554.2_1_1:241757348-241757720:-|nuORF 2.8892196856762586 0.5377058178582064 1 [Y{I|L}]AVVQAV 8 5 33.365 0 0 3.3682 0 0 0 144.08736615589444 144.08736615589444 26.375175252488248 0 0 0 0 0 2 0 0 [Y{I|L}]AVVQAV 3.3682 - 83 NaN NaN 114890.1 NaN 15495 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19196 79.124 NaN 122100 35 0 11316 0.261 + 11237 IYLERFPIF 9 47 599.3368677776591 1196.6591826221181 2 599.8386840820312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IYLERFPIF_ ENSG00000011260|ENST00000225298|UTP18 20.41453444215458 0.18397929046831515 1 [Y{I|L}]V{M(Oxidation (M))|F} 4 6 44.314 0 0 3.7031 0 0 0 671.3512056940061 671.3512056940061 37.324229892291484 0 0 0 0 1.2887254899964358 1.5228787452803376 0 0 [Y{I|L}]V{M(Oxidation (M))|F} 3.7031 - 80 + NaN NaN 98962.9 NaN 15496 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19197 79.128 NaN 255290 35 0 21204 0.261 + 34426 YPETLGRLLIL 11 62 644.3871945702259 1286.7598362072517 2 644.387939453125 MULTI HCD FTMS 0 0 0 19193 79733.796875 0.15533162705747408 -4 0.1182708740234375 4 Unmodified _YPETLGRLLIL_ ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 29.28111348798908 0.2059830635689761 1 {I|L}TEE{I|L} 5 9 38.998 0 0 3.0307 0 0 683.4692873128598 0 683.4692873128598 0 24.534021960761265 0 0 0 0.7059771852360797 0 0 0 {I|L}TEE{I|L} 3.0307 - 54 NaN NaN 123482.5 NaN 15497 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19198 79.131 NaN 99867 35 0 9790.5 0.261 + 10012 IESWLELFN 9 46 575.7922546848829 NaN 0 575.7913818359375 PEAK HCD FTMS 0 0 0 19193 33987.7109375 0.22097896364841402 32 -0.925201416015625 5 Unmodified _IESWLELFN_ REV__ENSG00000067369|ENST00000382044|TP53BP1;REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF;REV__nc|ENSG00000067369|Q12888-3|TP53BP1;REV__nc|ENSG00000067369|Q12888|TP53BP1 10.823927491677226 0.2427956001690155 1 E 1 -1 6.9897 0 0 0.60803 0 0 131.09279742249868 886.410012602139 1017.5028100246377 0 0 0 0 0 0 0 0 0 E 0.60803 + + 6 + NaN NaN 101906.9 NaN 15498 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19199 79.134 NaN 88316 35 0 5000.1 0.263 + 26293 SRPGRLLD 8 55 457.26422640481616 912.5138998764323 2 457.2644958496094 MULTI HCD FTMS 0 0 0 19193 51027.44921875 0.7621632555803561 2 -0.05359649658203125 6 Unmodified _SRPGRLLD_ nc|ENSG00000167984|Q7RTR2-2|NLRC3 2.577480529830294 0.5381683276125971 1 [EP]V 3 7 10.458 0 0 1.146 0 0 0 584.3269241286386 584.3269241286386 6.478174818886375 0 0 0 0 0 0 0 0 [EP]V 1.146 - 14 NaN NaN 109388.3 NaN 15499 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19200 79.138 NaN 95387 35 0 26131 0.261 + 10137 IFMNNRSF 8 42 514.753073689265 1027.4915944453298 2 514.7532348632812 MULTI HCD FTMS 0 0 0 19193 110195.1328125 1 0 0 7 Unmodified _IFMNNRSF_ ENSG00000257743|ENST00000477922|MGAM2 5.760428011301431 0.5334459684533844 1 S{M(Oxidation (M))|F} 2 6 16.454 0 0 1.6013 0 0 775.3809357312658 0 775.3809357312658 0 13.354706403678875 0 0 0 0 0 0 0 + S{M(Oxidation (M))|F} 1.6013 + + 6 + NaN NaN 96798.7 NaN 15500 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19201 79.142 NaN 155950 35 0 23107 0.261 + 5606 FLSLEQYL 8 57 506.77049268864766 1011.5264324440953 2 506.77166748046875 MULTI HCD FTMS 0 0 0 19193 62500.68359375 1 0 0 8 Unmodified _FLSLEQYL_ nc|ENSG00000276234|O75478-2|TADA2A 15.847184025352803 0.47719562709667024 1 S{I|L} 2 6 25.969 0 0 2.5673 0 0 793.3993930039162 0 793.3993930039162 0 4.542425094393252 0 0 0 0.5 0 0 0 + S{I|L} 2.5673 + + 21 NaN NaN 115794.3 NaN 15501 3698 19193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19203 79.147 NaN 334830 35 0 41346 0.327 + 25759 SLEAFTCSLI 10 64 542.2730029804914 1082.5314530277826 2 542.2733764648438 MULTI HCD FTMS 0 0 0 19202 129289.3984375 0.7233147845175286 -5 0.148895263671875 1 Unmodified _SLEAFTCSLI_ REV__ENSG00000146463|ENST00000314607|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-4|ZMYM4 30.636539890814138 0.2266618088935899 1 GVS{I|L}{I|L} 5 -1 56.938 0 0 5.2597 0 0 595.239061424025 0 595.239061424025 0 40.74031267727719 0 0 0 1.4247425010840047 0 0.9247425010840047 0 GVS{I|L}{I|L} 5.2597 - 421 NaN NaN 135742.9 NaN 15502 3699 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19204 79.151 NaN 201720 35 0 22557 0.261 + 18290 MPDVELNL 8 41 465.7336810963631 929.4528092595262 2 465.7337646484375 MULTI HCD FTMS 0 0 0 19202 159825.765625 0.32320198586522597 15 -0.4263763427734375 2 Unmodified _MPDVELNL_ ENSG00000124942|ENST00000378024|AHNAK 34.10243960390752 0.30669083636501265 1 {I|L}N{I|L} 3 5 39.253 0 0 4.2232 0 0 571.2314365191367 0 571.2314365191367 0 28.79493455131808 0 0 0 0.8807196863200843 0 0 0.4247425010840047 + {I|L}N{I|L} 4.2232 + + 28 NaN NaN 117043.5 NaN 15503 3699 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19205 79.155 NaN 106710 35 0 12817 0.261 + 20212 NYLIFSEKEE 10 44 636.3140867585987 1270.6136205839973 2 636.3146362304688 MULTI HCD FTMS 0 0 0 19202 35523.96875 0.5766060829320114 4 -0.12476348876953125 3 Unmodified _NYLIFSEKEE_ tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1 10.799506525563784 0.4100970765206026 1 [YN]{I|L} 3 7 39.705 0 0 3.1249 0 0 0 877.4004939409498 877.4004939409498 35.72559982972642 0 0 0 0 0.9247425010840047 2 0 0 + [YN]{I|L} 3.1249 + + 15 + NaN NaN 99854.6 NaN 15504 3699 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19206 79.158 NaN 40840 35 0 4500.7 0.264 + 27781 TAVITEFAL 9 32 482.7710283795971 NaN 0 482.7713623046875 PEAK HCD FTMS 0 0 0 19202 6733.3271484375 0.2774707837676867 4 -0.12476348876953125 4 Unmodified _TAVITEFAL_ ENSG00000167799|ENST00000376693|NUDT8;ENST00000301490.8_2_11:67395419-67395788:-|nuORF 10.823927491677226 0.2427956001690155 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87997.1 NaN 15505 3699 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19207 79.162 NaN 73122 35 0 6597 0.261 -1 AEMLPGVLQQF 11 44 624.818495803835 1247.62243867447 2 624.8186645507812 MULTI HCD FTMS 0 0 0 19202 30413.392578125 0.4148595510168066 14 -0.4068145751953125 5 Oxidation (M) _AEM(Oxidation (M))LPGVLQQF_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 14.405379775768559 0.3315678654765638 1 RP{I|L} 3 -1 13.231 0 0 1.0605 0 0 534.2804109418513 344.0915621393188 878.3719730811702 0 0 0 0 0 1 0 0 0 RP{I|L} 1.0605 - 28 + NaN NaN 102807.5 NaN 15506 3699 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19208 79.165 NaN 43109 35 0 4650.3 0.263 + -1 WCGRGPRP 8 28 493.2433791165363 NaN 0 493.72344970703125 PEAK HCD FTMS 0 0 0 19202 6599.59912109375 0.512889888562773 1 -0.02297210693359375 6 Carbamidomethyl (C) _WC(Carbamidomethyl (C))GRGPRP_ REV__ENST00000424720.2_12:132824120-132905933:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93178.7 NaN 15507 3699 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19210 79.17 NaN 2545300 35 0 965580 0.327 + 6227 FPESAGAF 8 54 413.1929484024883 824.3713438717766 2 413.1935729980469 MULTI HCD FTMS 0 0 0 19209 1504900.375 0.4352994769407615 13 -0.38384246826171875 1 Unmodified _FPESAGAF_ REV__ENSG00000159433|ENST00000290607|STARD9 0.6903765706972694 0.5409681170271811 1 {I|L} 1 -1 9.4061 0 0 1.141 0 0 155.0923422526302 553.1721895807249 708.264531833355 0 0 0 0 0 0.6307196863200843 0 0 0 {I|L} 1.141 - 2 + NaN NaN 484566.1 NaN 15508 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19211 79.174 NaN 1251100 35 0 173010 0.261 + 20185 NYLDRFLSL 9 99 570.8060184248639 1139.5974839165276 2 570.8060913085938 MULTI HCD FTMS 0 0 0 19209 643510.25 0.018883402437366793 17 -0.5019302368164062 2 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 132.37960578797484 0.0004606598083464779 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 108.75 0 0 9.5428 9.5428 95.858 0 0 0 7.114757586626226 7.114757586626226 7.114757586626226 15.735228231192409 0 2.8494850021680094 1.6989700043360187 0.23965182871044374 1.3243923658886185 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV]QDR{M(Oxidation (M))|F}S{I|L}{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}S{I|L}{I|L};[YV]{[RE]|[WV]}N{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}D{I|L} 9.5428;8.162;7.1196;6.0583;5.8081;5.7389;5.5915;4.6775;4.6041;4.502 +;-;-;-;-;-;-;-;-;- + 2067 NaN NaN 297536.9 NaN 15509 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19212 79.178 NaN 331650 35 0 71559 0.261 + 20070 NYIPRFWTF 9 70 622.3163957915608 1242.6182386499215 2 622.31689453125 MULTI HCD FTMS 0 0 0 19209 110699.9375 0.008059759143390549 52 -1.48907470703125 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 53.832793166522166 0.026208976789938845 1 [YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F} 9 2 + 45.409 0 0 3.6543 3.6543 81.843 0 0 0 17.34900271269879 0.21915905133738534 0.21915905133738534 5 0 1.8494850021680094 1.6989700043360187 0.7302046884880937 0 [YN]{I|L}[WP][R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[YN]{I|L}[WP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6543;3.2519 -;- 116 + NaN NaN 137529.7 NaN 15510 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19213 79.181 NaN 291570 35 0 94219 0.261 -1 0 55 605.6148446160892 1813.8227044484674 3 606.2996826171875 MULTI HCD FTMS 0 0 0 19209 8356.2685546875 0.34464615888020533 1 -0.03945159912109375 4 NaN NaN 1 Q 1 -1 4.6041 0 0 0.25383 0 0 1387.6325016670203 295.1080416315063 1682.7405432985265 0 0 0 0 0 0 0 0 0 Q 0.25383 - 26 + NaN NaN 124702.2 NaN 15511 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19214 79.185 NaN 140770 35 0 16742 0.261 + 35605 YYIFIPSKF 9 38 589.3188011551375 NaN 0 589.3194580078125 PEAK HCD FTMS 0 0 0 19209 46872.30078125 0.19057067132702318 66 -1.9076004028320312 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 {I|L} 1 8 16.237 0 0 1.38 0 0 326.1283338170812 734.3895124551537 1060.517846272235 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.38 + + 20 + NaN NaN 102935.4 NaN 15512 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19215 79.188 NaN 169330 35 0 30455 0.261 -1 LYMPKLLYF 9 41 602.3260920889292 NaN 0 602.3140869140625 PEAK HCD FTMS 0 0 0 19209 11577.7490234375 0.29222557608957145 -4 0.10607147216796875 6 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 11.640296217721598 0.23883959125015683 1 Y[TP]P{I|L} 5 -1 14.833 0 0 1.2334 0 0 165.1023124931508 463.21003137760005 628.3123438707509 0 0 0 0 0 0.5 0 0 0 Y[TP]P{I|L} 1.2334 - 25 + NaN NaN 108870 NaN 15513 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19216 79.191 NaN 109960 35 0 9310.6 0.261 + 26819 SYIEHIFEI 9 51 575.7922546848829 NaN 0 575.7911376953125 PEAK HCD FTMS 0 0 0 19209 26364.0625 0.17141205006495636 34 -0.9897613525390625 7 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 14.838274106304384 0.2220448417561729 1 E 1 8 10.797 0 0 0.93921 0 0 131.0927602754876 886.4124746742614 1017.5052349497489 0 0 0 0 0 0.3807196863200844 0 0 0 + E 0.93921 + + 19 + NaN NaN 113808.4 NaN 15514 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19217 79.195 NaN 163710 35 0 26128 0.261 + 30025 VFPFRTFYL 9 45 595.3239615237284 1188.6333701142566 2 595.3233032226562 MULTI HCD FTMS 0 0 0 19209 34045.80078125 0.1354669386204119 13 -0.38384246826171875 8 Unmodified _VFPFRTFYL_ ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 10.823927491677226 0.26684000660059787 1 M 1 9 3.0989 0 0 0.26071 0 0 630.2836519519504 424.2848299615844 1054.568481913535 0 0 0 0 0 0 0 0 0 M 0.26071 - 11 + NaN NaN 115067.7 NaN 15515 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19218 79.198 NaN 134870 35 0 21348 0.261 + 30028 VFPSMPIKLQL 11 39 636.87290544515 1271.7312579570998 2 636.8738403320312 MULTI HCD FTMS 0 0 0 19209 24837.802734375 0.6197771757438327 -2 0.05359649658203125 9 Unmodified _VFPSMPIKLQL_ ENSG00000128915|ENST00000261520|ICE2 7.101721422024254 0.3877749288398915 1 D{I|L} 2 10 20.969 0 0 1.6489 0 0 1025.5937630843025 0 1025.5937630843025 0 7.80848766326997 0 0 0 0 0 0 0 D{I|L} 1.6489 - 26 NaN NaN 131533.9 NaN 15516 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19219 79.201 NaN 111510 35 0 8872.3 0.262 + 35344 YYAIVAMVI 9 47 529.78311289886 1057.55167286452 2 529.7828369140625 MULTI HCD FTMS 0 0 0 19209 27827.01171875 0.7423450936101893 -1 0.02297210693359375 10 Oxidation (M) _YYAIVAM(Oxidation (M))VI_ ENSG00000140199|ENST00000354181|SLC12A6;ENST00000560023.1_1_15:34533432-34537514:-|nuORF;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant 56.04830969593885 0.023109620888794903 1 {I|L}VA{M(Oxidation (M))|F}V{I|L} 6 3 57.256 0 0 5.414 0 0 397.1648121564469 0 397.1648121564469 0 50.26593150440647 0 0 0 1.8494850021680094 0 0 0 + {I|L}VA{M(Oxidation (M))|F}V{I|L} 5.414 + + 49 NaN NaN 101997.8 NaN 15517 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19220 79.204 NaN 107390 35 0 8570.7 0.261 + 7889 FYVIDRGTF 9 62 559.2883307609322 1116.5621085886644 2 559.28662109375 MULTI HCD FTMS 0 0 0 19209 30708.236328125 1 0 0 11 Unmodified _FYVIDRGTF_ ENSG00000005249|ENST00000265717|PRKAR2B 15.847184025352803 0.2234401846867398 1 [WY]{M(Oxidation (M))|F}[K{I|L}]DV{M(Oxidation (M))|F} 8 6 + 26.604 0 0 2.3827 2.3827 79.386 0 0 0 5.511525224473811 4.921525057367404 4.921525057367404 1.303337684950062 0 0.5 0 0 0 [WY]{M(Oxidation (M))|F}[K{I|L}]DV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[K{I|L}]DV{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][{I|L}V]{[MG]|[TS]}{I|L}Q{M(Oxidation (M))|F} 2.3827;2.2659;0.64257 -;-;- 77 + NaN NaN 97227.6 NaN 15518 3700 19209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19222 79.209 NaN 1065300 35 0 142050 0.327 + 13436 KYPENFFLL 9 82 585.8132425088911 1169.6119320845821 2 585.8134765625 MULTI HCD FTMS 0 0 0 19221 814890.1875 0.004110234640278263 134 -3.8301620483398438 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 83.42873516780209 0.004742894019233849 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.377 0 0 8.0691 8.0691 90.465 0 0 0 7.147642715192504 62.43115345883339 7.147642715192504 8.57840941039747 0 2.4802046884880937 0 0.3054621874040891 1.4916440611282626 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 8.0691;7.3357;7.2818;6.9691;6.5484;6.5484;6.4415;6.2356;6.1818;5.9406 +;-;-;-;-;-;-;-;-;- + 1864 NaN NaN 250259.3 NaN 15519 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19223 79.214 NaN 248920 35 0 16657 0.261 + 3243 EDRRTLVL 8 72 501.29058431079056 1000.5666156883811 2 501.2904357910156 MULTI HCD FTMS 0 0 0 19221 177713.296875 0.31240753013696254 14 -0.40009307861328125 2 Unmodified _EDRRTLVL_ CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3 5.760428011301431 0.5334459684533844 1 W 1 8 9.732 0 0 0.97265 0 0 444.28133550330466 367.19686544663574 811.4782009499404 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.97265 - 74 + NaN NaN 130528.9 NaN 15520 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19224 79.217 NaN 467690 35 0 79847 0.261 + 7057 FQLFAKPIL 9 73 538.8288546804187 1075.6431564276372 2 538.8289794921875 MULTI HCD FTMS 0 0 0 19221 169058.984375 0.16100384143511987 7 -0.20014190673828125 3 Unmodified _FQLFAKPIL_ REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2996 0 0 910.600811312206 0 910.600811312206 0 2.921656121837657 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2996 + + 37 + NaN NaN 149613.7 NaN 15521 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19225 79.221 NaN 309380 35 0 22100 0.261 + 24449 RYLDLFTSF 9 66 581.3004901821857 1160.5864274311714 2 581.3013916015625 MULTI HCD FTMS 0 0 0 19221 241909.53125 0.027133514992106467 18 -0.5215301513671875 4 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 55.50274090549119 0.023872834264864425 1 {I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5 4 59.865 0 0 5.1582 0 0 547.2762928693375 0 547.2762928693375 0 43.41129063296272 0 0 0 1.8494850021680094 0 0.8807196863200843 0 + {I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.1582 + + 101 NaN NaN 131048.3 NaN 15522 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19226 79.224 NaN 265200 35 0 36733 0.261 + 22460 QQRPCGVISPF 11 58 616.3149277895624 NaN 0 616.2996215820312 PEAK HCD FTMS 0 0 0 19221 13859.2705078125 1 0 0 5 Unmodified _QQRPCGVISPF_ REV__ENSG00000222038|ENST00000409602|POTEJ 9.38312468134398 0.31550292094573573 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}EDVVT 7 -1 42.427 0 0 3.4477 0 0 131.127488066519 259.10898767642817 390.23647574294716 0 0 0 0 0 0 0 1.6237125054200234 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}EDVVT 3.4477 - 400 + NaN NaN 121516.7 NaN 15523 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19227 79.227 NaN 380900 35 0 41329 0.261 + 25760 SLEAFTCSLI 10 53 542.2730029804914 1082.5314530277826 2 542.7745361328125 MULTI HCD FTMS 0 0 0 19221 151862.453125 1 0 0 6 Unmodified _SLEAFTCSLI_ REV__ENSG00000146463|ENST00000314607|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-4|ZMYM4 30.636539890814138 0.2266618088935899 1 GVS{I|L}{I|L} 5 -1 56.938 0 0 5.2597 0 0 595.240037986525 0 595.240037986525 0 42.33410649039925 0 0 0 1.4247425010840047 0 0.9247425010840047 0 GVS{I|L}{I|L} 5.2597 - 62 NaN NaN 135638.4 NaN 15524 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19228 79.231 NaN 244620 35 0 33624 0.261 + 27352 SYSFFHFML 9 68 597.7679890863136 1193.5214252394271 2 597.7676391601562 MULTI HCD FTMS 0 0 0 19221 74604.234375 0.6393941045542326 -3 0.093048095703125 7 Oxidation (M) _SYSFFHFM(Oxidation (M))L_ ENSG00000111897|ENST00000339697|SERINC1 67.34385681178166 0.00994769994983633 1 H{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[MT] 6 6 39.403 0 0 3.3014 0 0 425.1966725080094 0 425.1966725080094 0 16.214986144209703 0 0 0 1.2134679910804405 0 0.4247425010840047 0 H{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[MT] 3.3014 - 142 NaN NaN 129888.8 NaN 15525 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19229 79.234 NaN 137930 35 0 27672 0.261 + 6075 FPEEAVLQQAF 11 35 639.8219216600472 1277.6292903868944 2 639.8221435546875 MULTI HCD FTMS 0 0 0 19221 71053.21875 0.5883549501372619 5 -0.147796630859375 8 Unmodified _FPEEAVLQQAF_ ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF 15.738622578938676 0.31995127722034494 1 G{I|L}QQA{M(Oxidation (M))|F} 6 6 57.652 0 0 4.5124 0 0 615.2922230451187 0 615.2922230451187 0 50.66183773464459 0 0 0 1.5 0 0 0 G{I|L}QQA{M(Oxidation (M))|F} 4.5124 - 68 NaN NaN 104255.1 NaN 15526 3701 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19231 79.239 NaN 2842500 35 0 436200 0.327 + 32299 VYVAIQAVL 9 94 488.2973861810708 974.5802194289416 2 488.2971496582031 MULTI HCD FTMS 0 0 0 19230 1697831.625 0.8199806430604248 1 -0.0328216552734375 1 Unmodified _VYVAIQAVL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 85.35673624503755 0.00464763827098139 1 [YV]VA{I|L}QAV{I|L} 9 0 + 93.554 0 0 9.5995 9.5995 94.966 0 0 0 16.453650195120844 11.773174902439578 11.773174902439578 11.773174902439578 0 2.6989700043360187 1.2218487496163564 0 0.2742275032520141 + + [YV]VA{I|L}QAV{I|L};[YV]VA{I|L}QA{I|L}V;[YV]VA{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QAV{I|L};[YV]VA{I|L}[AG]A{I|L}V;{[VA]|[{I|L}G]}[Y{I|L}]VQAV{I|L};[YV][{I|L}A]VQAV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QA{I|L}V;{[VA]|[{I|L}G]}[YV]{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}Q{I|L}[YV]AV{I|L} 9.5995;8.3914;8.3732;7.9112;7.4466;7.1665;6.7266;6.7032;6.685;6.0644 +;-;-;-;-;-;-;-;-;- + 1166 NaN NaN 507442.3 NaN 15527 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19232 79.243 NaN 1498200 35 0 263340 0.261 + 13745 KYPSPFFVF 9 92 566.297318493246 1130.580084053292 2 566.2974853515625 MULTI HCD FTMS 0 0 0 19230 929973.5625 0.010835599504158192 76 -2.1831893920898438 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 99.79894945604345 0.0042691968066200965 1 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 83.469 0 0 7.3829 7.3829 92.658 0 0 0 14.538306805746842 16.478174818886373 14.538306805746842 14.538306805746842 0 2.8494850021680094 0 0.9802046884880937 0.9308845489566889 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]KY{M(Oxidation (M))|F} 7.3829;6.097;5.2136;4.7916;4.7577;4.3813;4.3595;4.3356;4.1496;4.0154 +;-;-;-;-;-;-;-;-;- + 1953 NaN NaN 323515.8 NaN 15528 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19233 79.247 NaN 1061300 35 0 210840 0.261 + 1426 AYQLMVDVF 9 84 551.2678568423767 1100.5211607515532 2 551.2682495117188 MULTI HCD FTMS 0 0 0 19230 730538.4375 1 0 0 3 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 149.9946105101851 8.83195450578534E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 9 0 + 98.585 0 0 8.9581 8.9581 95.871 0 0 0 15.475373959437846 52.43623790491817 15.475373959437846 19.45046257204389 0 2.8494850021680094 1.2218487496163564 0.3807196863200844 1.024227503252014 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};[Y{I|L}][QA]{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[WK]C(Carbamidomethyl (C))V{M(Oxidation (M))|F};[DV]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[QT]V{M(Oxidation (M))|F};[DV]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QT]V{M(Oxidation (M))|F};[VS][Y{I|L}]C(Carbamidomethyl (C))VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][WK]C(Carbamidomethyl (C))V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[WK][CG]V{M(Oxidation (M))|F};[Y{I|L}][VS]C(Carbamidomethyl (C))VDV{M(Oxidation (M))|F} 8.9581;7.1907;6.2443;5.0998;5.0156;4.8828;4.555;4.2582;4.2582;4.2206 +;-;-;-;-;-;-;-;-;- + 1182 NaN NaN 242874.2 NaN 15529 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19234 79.25 NaN 721430 35 0 31825 0.261 -1 0 84 479.2774935703601 956.5404342075202 2 479.27752685546875 MULTI HCD FTMS 0 0 0 19230 673634.0625 0.6309996262527908 18 -0.5117263793945312 4 NaN NaN 1 Q 1 -1 10.674 0 0 1.1159 0 0 458.27356083101273 367.1973020032521 825.4708628342648 0 0 0 0 0 0.6694451763165201 0 0 0 Q 1.1159 - 56 + NaN NaN 187813.3 NaN 15530 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19235 79.254 NaN 884010 35 0 289490 0.261 -1 0 50 422.19864156822445 842.3827302032489 2 422.1988220214844 MULTI HCD FTMS 0 0 0 19230 431815.71875 0.4656006317942547 18 -0.5117263793945312 5 NaN NaN 1 P{M(Oxidation (M))|F} 2 -1 17.959 0 0 2.1319 0 0 580.2511211718021 0 580.2511211718021 0 8.494850021680094 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 2.1319 - 22 + NaN NaN 221545 NaN 15531 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19236 79.257 NaN 652620 35 0 67389 0.261 + 15746 LPFLEHLEL 9 85 555.8132181338738 1109.6118833345474 2 555.813232421875 MULTI HCD FTMS 0 0 0 19230 190057.53125 0.6067740178598954 3 -0.09195709228515625 6 Unmodified _LPFLEHLEL_ ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18 115.6920309560759 0.002013163348980568 1 {I|L}P{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L} 9 0 + 79.193 0 0 7.137 7.137 87.949 0 0 0 24.65202666877194 6.138400522068537 6.138400522068537 6.138400522068537 0 2.673877368056628 1.3979400086720375 1.9124379954164592 0 + + {I|L}P{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L};{I|L}P{M(Oxidation (M))|F}{I|L}[KA]STS{M(Oxidation (M))|F};{I|L}P{M(Oxidation (M))|F}{I|L}EHE{I|L}{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}EHE{I|L}{I|L};{I|L}{M(Oxidation (M))|F}{I|L}P[KA]STS{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}P{I|L}[KA]STS{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}P{I|L}EHE{I|L}{I|L};{I|L}{M(Oxidation (M))|F}{I|L}{I|L}AAQTS{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}P{I|L}EH{I|L}E{I|L} 7.137;6.5838;6.5468;6.0854;5.6205;5.462;5.2803;5.2433;5.2103;5.1227 +;-;-;+;-;-;-;-;-;- + 1256 + NaN NaN 183465.7 NaN 15532 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19237 79.26 NaN 469200 35 0 73904 0.261 + 32307 VYVATGLKF 9 67 499.28868650322767 996.5628200732554 2 499.2887878417969 MULTI HCD FTMS 0 0 0 19230 165841.421875 0.6711623285853022 1 -0.0328216552734375 7 Unmodified _VYVATGLKF_ ENSG00000155970|ENST00000318063|MICU3 29.081581746732265 0.1154664336125038 1 VYVA{I|L}Q 6 4 76.292 0 0 7.6555 0 0 0 320.1590670221313 320.1590670221313 50.36175320500661 0 0 0 0 2.2302046884880937 1.6989700043360187 0 0 VYVA{I|L}Q 7.6555 - 289 + NaN NaN 152967.4 NaN 15533 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19238 79.263 NaN 385760 35 0 42515 0.261 + 33630 YIVLGKGSLF 10 74 548.8242067873474 NaN 0 548.8057250976562 PEAK HCD FTMS 0 0 0 19230 22979.7890625 1 0 0 8 Unmodified _YIVLGKGSLF_ REV__ENSG00000090776|ENST00000204961|EFNB1 11.640296217721598 0.3302218087712401 1 MQ{I|L}NP 5 -1 11.943 0 0 1.0901 0 0 264.1837851041749 245.1296328180297 509.3134179222046 0 0 0 0 0 0 0 0 0.3807196863200844 MQ{I|L}NP 1.0901 - 448 + NaN NaN 158155.5 NaN 15534 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19239 79.267 NaN 189070 35 0 12740 0.261 + 32722 WPTLSISTL 9 79 509.2846847460505 1016.554816558901 2 509.80401611328125 MULTI HCD FTMS 0 0 0 19230 22046.87890625 0.26556183114919274 7 -0.2033843994140625 9 Unmodified _WPTLSISTL_ ENSG00000118402|ENST00000369816|ELOVL4 15.847184025352803 0.2234401846867398 1 {I|L}TS{I|L} 4 6 13.949 0 0 1.3721 0 0 584.2950031817511 0 584.2950031817511 0 8.618916246967776 0 0 0 0.3494850021680094 0 0.3252574989159953 0 {I|L}TS{I|L} 1.3721 - 108 + NaN NaN 123106.9 NaN 15535 3702 19230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19241 79.272 NaN 848930 35 0 87202 0.327 + 34427 YPETLGRLLIL 11 91 644.3871945702259 1286.7598362072517 2 644.3873291015625 MULTI HCD FTMS 0 0 0 19240 469476.9375 0.9146010779112929 1 -0.02288055419921875 1 Unmodified _YPETLGRLLIL_ ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 101.5434397834973 0.020855853890424585 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{I|L}GR{I|L}{I|L}{I|L}{I|L} 11 0 + 97.103 0 0 7.5463 7.5463 92.008 0 0 0 19.235162698957282 16.57577319177794 16.57577319177794 11.020599913279625 0 2.5924778212679485 1.3979400086720375 1.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{I|L}GR{I|L}{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TE{I|L}GR{I|L}{I|L}{I|L}{I|L};[EP]YT{I|L}GR{I|L}{I|L}{I|L}{I|L};[EP]TY{I|L}GR{I|L}{I|L}{I|L}{I|L};{I|L}{I|L}[Y{I|L}]{[NV]|[RG]}{I|L}TPE{I|L} 7.5463;6.6898;6.0514;5.9587;1.6574 +;-;-;-;- + 436 NaN NaN 217001.9 NaN 15536 3703 19240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19242 79.276 NaN 558100 35 0 114050 0.261 + 3781 EPDSWHWLL 9 75 591.7826254583432 1181.5506979834863 2 591.7828369140625 MULTI HCD FTMS 0 0 0 19240 260746.078125 0.7827651821110324 2 -0.05913543701171875 2 Unmodified _EPDSWHWLL_ ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 44.40701690623563 0.04511410083598184 1 DSWH{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 8 4 33.097 0 0 2.8011 0 0 208.0845661847672 0 208.0845661847672 0 15.243500300354139 0 0 0 0.3494850021680094 0 0.9247425010840047 0 DSWH{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 2.8011 - 180 NaN NaN 170102.1 NaN 15537 3703 19240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19243 79.28 NaN 431730 35 0 50428 0.261 + 25761 SLEAFTCSLI 10 52 542.2730029804914 1082.5314530277826 2 542.774658203125 MULTI HCD FTMS 0 0 0 19240 120366.109375 0.7925995326568646 2 -0.05913543701171875 3 Unmodified _SLEAFTCSLI_ REV__ENSG00000146463|ENST00000314607|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-4|ZMYM4 30.636539890814138 0.2266618088935899 1 GVS{I|L}{I|L} 5 -1 55.433 0 0 5.1207 0 0 595.2393665998062 0 595.2393665998062 0 39.447055689656665 0 0 0 1.4247425010840047 0 0.9247425010840047 0 GVS{I|L}{I|L} 5.1207 - 133 NaN NaN 144030.9 NaN 15538 3703 19240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19244 79.283 NaN 425360 35 0 76578 0.261 + 4910 FAIPLIEKL 9 63 522.3285503584551 1042.6425477837101 2 522.3289184570312 MULTI HCD FTMS 0 0 0 19240 88784.0859375 0.017287903549211888 20 -0.5609054565429688 4 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 29.081581746732265 0.1154664336125038 1 {I|L}{[CP]|[EA]} 3 7 19.265 0 0 1.8477 0 0 711.4533952991096 0 711.4533952991096 0 4.498351373633957 0 0 0 0.8807196863200843 0 0 0 {I|L}{[CP]|[EA]} 1.8477 - 27 NaN NaN 147959.2 NaN 15539 3703 19240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19245 79.286 NaN 177130 35 0 11913 0.261 + -1 YICSYNYCL 9 63 599.748897834139 1197.483242735078 2 599.749267578125 MULTI HCD FTMS 0 0 0 19240 49976.92578125 0.5661519444483041 1 -0.02288055419921875 5 Carbamidomethyl (C) _YIC(Carbamidomethyl (C))SYNYCL_ REV__ENSG00000136895|ENST00000373387|GARNL3;REV__ENST00000481242.5_1_9:130127572-130155530:+|nuORF;REV__ENST00000496711.5_1_9:130126995-130155530:+|nuORF;REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3;REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3 7.910154910731844 0.2910521888787154 1 {I|L}{I|L}RY{I|L} 5 -1 26.466 0 0 2.2101 0 0 521.0551229238621 0 521.0551229238621 0 0.6470366922538062 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}RY{I|L} 2.2101 - 118 + NaN NaN 116815.5 NaN 15540 3703 19240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19246 79.29 NaN 196300 35 0 59104 0.261 + 32126 VYSFVTPTF 9 42 530.7714262350614 1059.5282995369228 2 530.7710571289062 MULTI HCD FTMS 0 0 0 19240 90877.171875 1 0 0 6 Unmodified _VYSFVTPTF_ ENSG00000130827|ENST00000369682|PLXNA3 15.847184025352803 0.2234401846867398 1 T[TP]{M(Oxidation (M))|F} 4 5 23.188 0 0 2.1885 0 0 595.3012563001146 0 595.3012563001146 0 17.703037561203843 0 0 0 1 0 0 0 + T[TP]{M(Oxidation (M))|F} 2.1885 + + 14 + NaN NaN 112595.9 NaN 15541 3703 19240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19248 79.295 NaN 544650 35 0 73966 0.327 + 22916 QYSIISNVF 9 69 535.7790135291716 1069.5434741251431 2 535.7794189453125 MULTI HCD FTMS 0 0 0 19247 153464.515625 0.9831122637680304 1 -0.0362548828125 1 Unmodified _QYSIISNVF_ ENSG00000162769|ENST00000366971|FLVCR1 49.55428908609986 0.03219431099695407 1 SNV{M(Oxidation (M))|F} 4 5 50.65 0 0 4.7356 0 0 604.3213158456306 0 604.3213158456306 0 36.837294113476204 0 0 0 1.6989700043360187 0 0.3494850021680094 0.4247425010840047 + SNV{M(Oxidation (M))|F} 4.7356 + + 89 NaN NaN 165579.1 NaN 15542 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19249 79.299 NaN 356450 35 0 45962 0.261 + 32414 VYYYSYLL 8 53 542.2730029804914 1082.5314530277826 2 542.2733764648438 MULTI HCD FTMS 0 0 0 19247 178745.6875 1 0 0 2 Unmodified _VYYYSYLL_ ENSG00000171862|ENST00000371953|PTEN;nc|ENSG00000171862|P60484-2|PTEN;PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant 34.18733598223924 0.30560024141787767 1 {[TV]|[{I|L}S]}Y{[C(Carbamidomethyl (C))E]|[WC]}VS{I|L}{I|L} 9 5 + 69.575 0 0 6.4271 6.4271 84.38 0 0 0 6.020599913279625 14.973024840566467 6.020599913279625 1.249387366082999 0 1.4247425010840047 1.6989700043360187 0.8494850021680094 0 {[TV]|[{I|L}S]}Y{[C(Carbamidomethyl (C))E]|[WC]}VS{I|L}{I|L};{[TV]|[{I|L}S]}Y[EC]GVS{I|L}{I|L};[YV]T{[C(Carbamidomethyl (C))E]|[WC]}VS{I|L}{I|L};[YV]T[EC]GVS{I|L}{I|L};{[TV]|[{I|L}S]}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}ES{I|L}{I|L};[YV]T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}ES{I|L}{I|L};{[TV]|[{I|L}S]}Y[MD]AAS{I|L}{I|L};[YV]{I|L}[C(Carbamidomethyl (C))S]ES{I|L}{I|L};[YV]T[MD]AAS{I|L}{I|L};{[TV]|[{I|L}S]}Y[MD][QT]{I|L}{I|L} 6.4271;6.3117;5.8709;5.7555;5.4354;4.8792;4.8365;4.8056;4.2803;4.1229 -;-;-;-;-;-;-;-;-;- 553 NaN NaN 138284.2 NaN 15543 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19250 79.303 NaN 1004600 35 0 201450 0.261 + 4539 EYLIVFPKL 9 69 561.3338653005517 1120.6531776679033 2 561.333984375 MULTI HCD FTMS 0 0 0 19247 380799.40625 0.049104955849314603 -6 0.1782684326171875 3 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 107.1870275148908 0.00340162908551068 1 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 86.995 0 0 7.7629 7.7629 92.444 0 0 0 12.491596866368013 12.491596866368013 12.491596866368013 11.505149978319906 0 2.742992819099939 1.5228787452803376 2.579689690656103 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}V{I|L}{M(Oxidation (M))|F}PK{I|L} 7.7629;6.7363 +;- + 919 NaN NaN 235554.3 NaN 15544 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19251 79.306 NaN 316590 35 0 78275 0.261 + 20071 NYIPRFWTF 9 60 622.3163957915608 1242.6182386499215 2 622.31640625 MULTI HCD FTMS 0 0 0 19247 162166.40625 0.011806891720460311 56 -1.5957565307617188 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 49.55428908609986 0.03219431099695407 1 [YN]{I|L} 3 6 44.749 0 0 3.6012 0 0 0 849.4052611420904 849.4052611420904 18.819459175083608 0 0 0 0 1 1.6989700043360187 0 0.7302046884880937 + [YN]{I|L} 3.6012 + + 102 NaN NaN 131384.8 NaN 15545 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19252 79.309 NaN 261950 35 0 135440 0.263 + 33575 YIMKKPLV 8 40 496.3038712465691 990.5931895599382 2 496.3040771484375 MULTI HCD FTMS 0 0 0 19247 56900.38671875 0.18124659692117798 19 -0.53802490234375 5 Unmodified _YIMKKPLV_ ENST00000366554.2_1_1:241757348-241757720:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F}AN 3 7 9.2968 0 0 0.93851 0 0 131.20510676890848 524.2533663385374 655.4584731074458 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AN 0.93851 - 10 + NaN NaN 117620.1 NaN 15546 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19253 79.313 NaN 242320 35 0 15961 0.261 + 16188 LPVLESFKVSF 11 80 633.3608731084701 1264.70719328374 2 633.3607177734375 MULTI HCD FTMS 0 0 0 19247 94569.390625 0.6421218650434998 -4 0.12467193603515625 6 Unmodified _LPVLESFKVSF_ ENSG00000118137|ENST00000236850|APOA1 57.2037768669896 0.051836674997482644 1 [{I|L}P]V{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KVS{M(Oxidation (M))|F} 11 0 + 59.659 0 0 4.7172 4.7172 80.936 0 0 0 4.3539670080671655 37.594279685344354 4.3539670080671655 0.22878745280337398 0 2.75 0 0 0 + + [{I|L}P]V{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KVS{M(Oxidation (M))|F};[{I|L}P]VE{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KVS{M(Oxidation (M))|F} 4.7172;4.6991 +;- + 224 NaN NaN 111647.1 NaN 15547 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19254 79.316 NaN 196100 35 0 64553 0.263 -1 SAKCKCKF 8 47 514.753073689265 1027.4915944453298 2 514.7531127929688 MULTI HCD FTMS 0 0 0 19247 53317.859375 0.48384949511083925 6 -0.17058563232421875 7 2 Carbamidomethyl (C) _SAKC(Carbamidomethyl (C))KC(Carbamidomethyl (C))KF_ ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3 5.230669730166228 0.5342319408533849 1 SA 2 -1 17.959 0 0 1.7478 0 0 0 866.3877089756062 866.3877089756062 3.3547064036788754 0 0 0 0 0 0 0 0 SA 1.7478 + + 3 + NaN NaN 111308.6 NaN 15548 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19255 79.319 NaN 518510 35 0 99016 0.261 + 10108 IFIDPGYQTF 10 65 600.8003296552803 1199.5861063773605 2 600.8004150390625 MULTI HCD FTMS 0 0 0 19247 151871.859375 0.3463905677180836 -3 0.0852203369140625 8 Unmodified _IFIDPGYQTF_ ENSG00000121741|ENST00000610343|ZMYM2 67.83816525789305 0.020146919733137328 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]YQT{M(Oxidation (M))|F} 10 0 + 55.01 0 0 4.5857 4.5857 84.811 0 0 0 5.228787452803374 39.7931914553854 5.228787452803374 9.164539485499255 0 1.805462187404089 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]YQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]Y[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[PG]YQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[PG]Y[AG]T{M(Oxidation (M))|F} 4.5857;3.8217;3.4644;2.7004 +;-;-;- + 195 NaN NaN 166027 NaN 15549 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19256 79.323 NaN 130890 35 0 11706 0.261 + 11983 KFWDYLQEF 9 52 638.3062160485514 1274.5978791639027 2 638.305908203125 MULTI HCD FTMS 0 0 0 19247 64807.59765625 1 0 0 9 Unmodified _KFWDYLQEF_ ENSG00000076258|ENST00000367749|FMO4;ENST00000462992.1_1_1:171292253-171302174:+|nuORF;ENST00000475780.5_1_1:171285408-171306524:+|nuORF 37.771325159832564 0.07557564330356273 1 DY{I|L}QE{M(Oxidation (M))|F} 6 3 59.711 0 0 4.6847 0 0 461.2412281720719 0 461.2412281720719 0 49.25373472475883 0 0 0 2.024227503252014 0 0.3807196863200844 0 + DY{I|L}QE{M(Oxidation (M))|F} 4.6847 + + 166 NaN NaN 120377.5 NaN 15550 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19257 79.326 NaN 72411 35 0 10668 0.264 + -1 FKYWCPPCKQ 10 38 452.8806253356557 NaN 0 452.8704528808594 PEAK HCD FTMS 0 0 0 19247 15823.2685546875 0.8622789585658701 -2 0.05570220947265625 10 Carbamidomethyl (C) _FKYWCPPC(Carbamidomethyl (C))KQ_ REV__ENSG00000136531|ENST00000375437|SCN2A;REV__ENSG00000144285|ENST00000674923|SCN1A;REV__ENST00000480032.4_1_2:166152333-166226884:+|nuORF;REV__nc|ENSG00000136531|Q99250-2|SCN2A;REV__nc|ENSG00000144285|P35498-2|SCN1A;REV__nc|ENSG00000144285|P35498-3|SCN1A 1.5922808571145555 0.3388215173004697 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.50945 0 0 469.556372886352 284.0881746881469 753.6445475744989 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50945 + + 3 + NaN NaN 108217.9 NaN 15551 3704 19247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19259 79.331 NaN 1728900 35 0 646560 0.327 -1 CGRGAPHA 8 46 413.1929484024883 824.3713438717766 2 413.1935119628906 MULTI HCD FTMS 0 0 0 19258 752502.125 0.21766476163534182 18 -0.50177001953125 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 10.727 0 0 1.3012 0 0 155.09254856103286 553.1720675104124 708.2646160714453 0 0 0 0 0 0.6747425010840047 0 0 0 {I|L} 1.3012 - 12 + NaN NaN 344286 NaN 15552 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19260 79.335 NaN 1032600 35 0 127100 0.261 + 20186 NYLDRFLSL 9 108 570.8060184248639 1139.5974839165276 2 570.8062744140625 MULTI HCD FTMS 0 0 0 19258 392974.40625 0.011531586110406195 22 -0.6131515502929688 2 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 110.79276546118962 0.0028129822227594098 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 100.61 0 0 8.8289 8.8289 95.673 0 0 0 8.605180470609227 8.605180470609227 8.605180470609227 19.22112371478309 0 2.7302046884880937 1.6989700043360187 0.2614393726401688 1.055462187404089 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}TV{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}TV{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV]QDR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DR[Y{I|L}]A{I|L} 8.8289;7.1422;6.3624;6.2612;5.4532;4.9908;4.6656;4.622;4.5746;4.4517 +;-;-;-;-;-;-;-;-;- + 1761 NaN NaN 250050.6 NaN 15553 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19261 79.339 NaN 264850 35 0 65689 0.261 + 20072 NYIPRFWTF 9 56 622.3163957915608 1242.6182386499215 2 622.3168334960938 MULTI HCD FTMS 0 0 0 19258 111253.0703125 0.00810003122794395 57 -1.6185684204101562 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 38.175570920033316 0.07371992880350783 1 [YN]{I|L}Q 4 6 43.188 0 0 3.4755 0 0 0 721.3349093072874 721.3349093072874 14.247425010840047 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}Q 3.4755 - 69 + NaN NaN 115540.9 NaN 15554 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19262 79.342 NaN 988160 35 0 298170 0.262 + 3449 EFSSALFEL 9 63 521.7582153276048 1041.5018777220096 2 521.7583618164062 MULTI HCD FTMS 0 0 0 19258 292875.90625 0.38303812541754173 -4 0.1214752197265625 4 Unmodified _EFSSALFEL_ REV__ENSG00000241945|ENST00000291576|PWP2 43.85829265575387 0.04763305254408404 1 {M(Oxidation (M))|F}E{I|L} 3 -1 33.812 0 0 3.2465 0 0 634.2963613714405 0 634.2963613714405 0 26.822581265925436 0 0 0 0.7614393726401688 0 0 0 {M(Oxidation (M))|F}E{I|L} 3.2465 + + 85 NaN NaN 245166.7 NaN 15555 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19263 79.346 NaN 305090 35 0 29141 0.261 + 19772 NYAWVYYHL 9 71 614.7929789950731 1227.571405056946 2 614.792724609375 MULTI HCD FTMS 0 0 0 19258 127872.5625 0.4796358917488512 81 -2.317596435546875 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 78.7280429016045 0.006263961847259105 1 [YN]AWVYYH{I|L} 9 0 + 90.652 0 0 7.3847 7.3847 95.68 0 0 0 15.484550065040281 15.484550065040281 15.484550065040281 62.98577533287428 0 2.5994850021680094 1.6989700043360187 0 1.055462187404089 + + [YN]AWVYYH{I|L};[WY]{[QG]|[NA]}VYYH{I|L};[KC]{[TV]|[{I|L}S]}C[C(Carbamidomethyl (C))R]K[KC] 7.3847;2.2538;1.2398 +;-;- + 479 NaN NaN 130068.3 NaN 15556 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19264 79.349 NaN 121780 35 0 30565 0.264 + 23504 RMYDAKRFTD 10 40 434.8822968659712 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 19258 79167.28125 0.7518943137642485 -10 0.296539306640625 6 Unmodified _RMYDAKRFTD_ ENSG00000081377|ENST00000375241|CDC14B;ENSG00000218305|ENST00000650262|CDC14C;nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B 1.4551175022131473 0.3389389101219087 1 {I|L} 1 10 6.9897 0 0 0.8055 0 0 159.32708044893621 592.3153780572874 751.6424585062236 0 0 0 0 0 0 0 0 0 {I|L} 0.8055 - 2 + NaN NaN 101788.5 NaN 15557 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19265 79.352 NaN 295900 35 0 52841 0.261 -1 MPLQYIYTL 9 63 579.2997169470104 NaN 0 579.3001098632812 PEAK HCD FTMS 0 0 0 19258 29999.28515625 0.4175275387176315 1 -0.0263214111328125 7 Oxidation (M) _M(Oxidation (M))PLQYIYTL_ ENSG00000089639|ENST00000203556|GMIP;GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant;nc|ENSG00000089639|Q9P107-2|GMIP 19.256988751693697 0.19238547928067054 1 TY 2 -1 20.217 0 0 1.7479 0 0 131.0956307192294 758.3547414661277 889.4503721853571 0 0 0 0 0 0.9247425010840047 0 0 0 TY 1.7479 - 23 + NaN NaN 136527 NaN 15558 3705 19258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19267 79.357 NaN 2658600 35 0 414210 0.326 + 29880 VFDIHVIDF 9 118 552.7898891660711 1103.5652253989422 2 552.7900390625 MULTI HCD FTMS 0 0 0 19266 1440866.75 0.46652189443860786 -3 0.08545684814453125 1 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 158.20266083822983 1.5497770410472245E-07 1 V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F} 9 0 + 112.07 0 0 10.155 10.155 90.136 0 0 0 67.84632257783835 16.478174818886373 16.478174818886373 2.40270483492408 0 3.079689690656103 0 2.392642683904553 0 + + V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F};V{M(Oxidation (M))|F}D{I|L}H{I|L}VD{M(Oxidation (M))|F};{M(Oxidation (M))|F}VD{I|L}HV{I|L}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}VD{I|L}H{I|L}VD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{I|L}D{M(Oxidation (M))|F};[DV]{M(Oxidation (M))|F}{I|L}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}H{I|L}VD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HVEV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EVHV{I|L}D{M(Oxidation (M))|F} 10.155;9.9373;9.4487;9.231;7.4481;7.2116;6.8072;6.4494;6.301;6.2974 +;-;-;-;+;-;-;-;-;- + 3325 + NaN NaN 487391.4 NaN 15559 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19268 79.362 NaN 1718200 35 0 434970 0.261 + 7813 FYPYGLQTF 9 88 568.2756573282156 1134.5367617232312 2 568.2766723632812 MULTI HCD FTMS 0 0 0 19266 699239.125 0.7665282833671944 -3 0.08545684814453125 2 Unmodified _FYPYGLQTF_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant 88.95385435242217 0.004553379958619559 1 {I|L}QT{M(Oxidation (M))|F} 4 5 48.822 0 0 4.3032 0 0 627.2674878968625 0 627.2674878968625 0 22.381680409011025 0 0 0 1.8807196863200843 0 0.4247425010840047 0.3807196863200844 + {I|L}QT{M(Oxidation (M))|F} 4.3032 + + 1482 + NaN NaN 344502.5 NaN 15560 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19269 79.365 NaN 1040300 35 0 132770 0.261 + 13437 KYPENFFLL 9 96 585.8132425088911 1169.6119320845821 2 585.8135375976562 MULTI HCD FTMS 0 0 0 19266 602504.375 0.003038979228160364 139 -3.9711151123046875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 76.82478488871298 0.006879825292024087 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 77.237 0 0 6.6037 6.6037 89.054 0 0 0 5.944825567400315 44.23897777978805 5.944825567400315 9.208187539523749 0 2.4876954943324545 0 0.28872548999643577 1.360924374808178 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}E]K{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}E]{I|L}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[EP]YK{I|L} 6.6037;5.8164;3.7397;3.7262;3.4541;2.939;2.7884;2.469;2.1037;1.7634 +;-;-;-;-;-;-;-;-;- + 1737 NaN NaN 245459.4 NaN 15561 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19270 79.368 NaN 879170 35 0 267120 0.261 + 15816 LPIDGANDLF 10 66 537.777016218253 1073.539479503306 2 537.777099609375 MULTI HCD FTMS 0 0 0 19266 466277.46875 0.48191451030164006 -4 0.11827850341796875 4 Unmodified _LPIDGANDLF_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF;nc|ENSG00000198408|O60502-4|OGA 83.42873516780209 0.0016734765818451427 1 [{I|L}P]{I|L}DQND{I|L}{M(Oxidation (M))|F} 9 2 + 80.213 0 0 7.4718 7.4718 90.633 0 0 0 3.65279269351241 59.24410632329284 3.65279269351241 9.208187539523749 0 2.4291746928241125 0 0.7059771852360797 0.4247425010840047 [{I|L}P]{I|L}DQND{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}DQGGD{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}D[AG]ND{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]QND{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]QND{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}D[AG]GGD{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]QGGD{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P][AG]ND{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]QGGD{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP][AG]ND{I|L}{M(Oxidation (M))|F} 7.4718;6.6141;6.6141;6.0971;6.0971;5.3648;5.2393;5.2393;5.2393;5.2393 -;-;+;-;-;-;-;-;-;- + 503 NaN NaN 211393.8 NaN 15562 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19271 79.372 NaN 587820 35 0 79332 0.261 + 17484 LYTALQQYF 9 66 573.7949042547112 1145.5752555762224 2 573.7951049804688 MULTI HCD FTMS 0 0 0 19266 231116 0.5059444632497347 -1 0.0263214111328125 5 Unmodified _LYTALQQYF_ ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;nc|ENSG00000089053|Q9UJX4-3|ANAPC5 126.56589448801843 0.0008132384440316759 1 [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F} 9 0 + 97.335 0 0 8.4966 8.4966 92.256 0 0 0 4.64719041932895 4.64719041932895 4.64719041932895 9.208187539523749 0 3.1677353201839438 1.3979400086720375 1.5044321917401078 0.7302046884880937 + + [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}Q[AG]Y{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}[AG]QY{M(Oxidation (M))|F};[Y{I|L}]TVNVQY{M(Oxidation (M))|F};[YT]{I|L}A{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TAAAVQY{M(Oxidation (M))|F};[Y{I|L}]TVNV[AG]Y{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}[AG][AG]Y{M(Oxidation (M))|F};[YT]{I|L}A{I|L}Q[AG]Y{M(Oxidation (M))|F};[Y{I|L}]T{[NV]|[RG]}VQY{M(Oxidation (M))|F} 8.4966;7.6928;7.2871;7.0769;6.7518;6.4142;6.2731;6.2032;5.948;5.7744 +;-;-;-;-;-;-;-;-;- + 527 NaN NaN 172057.5 NaN 15563 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19272 79.375 NaN 444030 35 0 32110 0.261 + 18646 MYGLFQTSF 9 87 555.2520052767209 1108.4894576202416 2 555.2522583007812 MULTI HCD FTMS 0 0 0 19266 245764.125 1 0 0 6 Oxidation (M) _M(Oxidation (M))YGLFQTSF_ ENSG00000077147|ENST00000371142|TM9SF3 88.90359156742426 0.00455469703666567 1 [Y{M(Oxidation (M))|F}]G{I|L}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F} 9 0 + 71.565 0 0 6.4561 6.4561 86.363 0 0 0 4.762036441594191 56.414412723804546 4.762036441594191 5.440680443502757 0 2 0 0.4247425010840047 0.3494850021680094 + + [Y{M(Oxidation (M))|F}]G{I|L}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]G{I|L}{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{[YC]|[HE]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]G{I|L}GAA[YT]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]G{I|L}[QA][YT]{M(Oxidation (M))|F} 6.4561;5.9652;5.3101;4.8193;4.3658;3.1007;2.4701;1.5633;1.5172 +;-;-;-;-;-;-;-;- + 993 NaN NaN 149339.6 NaN 15564 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19273 79.378 NaN 558030 35 0 35585 0.261 + 24450 RYLDLFTSF 9 78 581.3004901821857 1160.5864274311714 2 581.3014526367188 MULTI HCD FTMS 0 0 0 19266 133939.625 0.01502318988506005 23 -0.6482391357421875 7 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 41.95555342248728 0.056367691549927025 1 {M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4 5 51.414 0 0 4.43 0 0 660.3594677121096 0 660.3594677121096 0 38.7113751626007 0 0 0 2 0 0.4247425010840047 0 + {M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4.43 + + 163 NaN NaN 166125.2 NaN 15565 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19274 79.382 NaN 261670 35 0 41463 0.261 + 3244 EDRRTLVL 8 75 501.29058431079056 1000.5666156883811 2 501.29034423828125 MULTI HCD FTMS 0 0 0 19266 96643.1953125 0.1698919691606346 19 -0.52789306640625 8 Unmodified _EDRRTLVL_ CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3 5.760428011301431 0.5334459684533844 1 V{[QG]|[NA]}QVE[{I|L}V] 8 6 11.151 0 0 1.1145 0 0 130.11429742841864 0 130.11429742841864 0 4.42979712652914 0 0 0 0.3807196863200844 0 0 0 V{[QG]|[NA]}QVE[{I|L}V] 1.1145 - 160 + NaN NaN 121286 NaN 15566 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19275 79.385 NaN 450730 35 0 51929 0.261 + 11385 IYPDSFTVL 9 64 527.7764795365985 1053.5384061399968 2 527.7762451171875 MULTI HCD FTMS 0 0 0 19266 90510.6015625 0.28210598325795805 -3 0.08545684814453125 9 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 81.61307344734483 0.005330412723537057 1 [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L} 9 0 + 60.863 0 0 5.777 5.777 86.515 0 0 0 21.43826348419349 38.17001930076354 21.43826348419349 8.560388789053334 0 2.1677353201839438 1.5228787452803376 1.1237125054200234 0 + + [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L};[Y{I|L}][YG][EP]TV{I|L} 5.777;4.9645 +;- + 235 NaN NaN 147617.7 NaN 15567 3706 19266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19277 79.39 NaN 616760 35 0 87708 0.327 -1 FVACWGPLF 9 88 548.7677656739922 1095.5209784147844 2 548.7685546875 MULTI HCD FTMS 0 0 0 19276 113064.15625 0.5052065322610768 -4 0.118255615234375 1 Carbamidomethyl (C) _FVAC(Carbamidomethyl (C))WGPLF_ ENSG00000180739|ENST00000333430|S1PR5 36.466142684027034 0.08156716203802528 1 {I|L}P{I|L}D 4 -1 52.568 0 0 4.7984 0 0 0 654.2514132135374 654.2514132135374 9.658044088628941 0 0 0 0 1.079689690656103 1.5228787452803376 0 0 {I|L}P{I|L}D 4.7984 - 532 + NaN NaN 191560.5 NaN 15568 3707 19276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19278 79.394 NaN 260980 35 0 83011 0.261 -1 LYPQFMFHL 9 50 606.2990095347391 1210.583466136278 2 606.3001098632812 MULTI HCD FTMS 0 0 0 19276 122236.921875 0.8136081579184379 22 -0.6154403686523438 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 8.593279151180031 0.2858735984551981 1 [KG]E{I|L} 4 -1 7.7917 0 0 0.64363 0 0 0 780.2866304986936 780.2866304986936 7.791681396005999 0 0 0 0 0 0 0 0 [KG]E{I|L} 0.64363 - 14 + NaN NaN 119166.1 NaN 15569 3707 19276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19279 79.398 NaN 678840 35 0 239070 0.261 + 17299 LYPQFMFHL 9 67 598.3019807680839 1194.5894086029678 2 598.3023071289062 MULTI HCD FTMS 0 0 0 19276 239772.390625 0.08756181135962304 -6 0.18059539794921875 3 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 54.773552608820026 0.024892918755467567 1 [Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 67.787 0 0 5.6745 5.6745 91.239 0 0 0 16.010971511813636 46.41196218813654 16.010971511813636 28.935530465182843 0 2.6237125054200234 1.6989700043360187 0 0 + + [Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{I|L}Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[Y{I|L}]{I|L} 5.6745;3.2523;0.48633 +;-;- + 512 NaN NaN 186472.7 NaN 15570 3707 19276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19280 79.401 NaN 540650 35 0 38542 0.261 + 17506 LYTILTTQL 9 102 533.3133625981736 1064.6121722631472 2 533.3133544921875 MULTI HCD FTMS 0 0 0 19276 149394.46875 0.9689837900814124 -2 0.05912017822265625 4 Unmodified _LYTILTTQL_ ENSG00000128654|ENST00000249442|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;nc|ENSG00000128654|O75431-2|MTX2 49.55428908609986 0.03219431099695407 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK{I|L}T[WR] 8 6 + 54.927 0 0 5.1593 5.1593 91.508 0 0 0 23.68440000316717 17.961141789795732 17.961141789795732 54.926609503452184 0 1.3807196863200843 2 1.0484550065040281 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK{I|L}T[WR] 5.1593 - 695 NaN NaN 165884.7 NaN 15571 3707 19276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19281 79.405 NaN 258570 35 0 25241 0.261 + 31849 VYMLAASLL 9 76 498.7747379562371 995.5349229792743 2 498.7738342285156 MULTI HCD FTMS 0 0 0 19276 80478.671875 1 0 0 5 Oxidation (M) _VYM(Oxidation (M))LAASLL_ ENSG00000143753|ENST00000323699|DEGS1 57.47134341890925 0.0211188941628804 1 [YV]{M(Oxidation (M))|F}{I|L}AAS{I|L}{I|L} 9 0 + 63.554 0 0 6.3839 6.3839 87.132 0 0 0 21.041747505291816 13.46787486224656 13.46787486224656 7.742275032520141 0 1.4731975075880328 1.6989700043360187 0.5 0 + + [YV]{M(Oxidation (M))|F}{I|L}AAS{I|L}{I|L};[YV]V[MT]AS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]AAS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]{I|L}AS{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}[QT]{I|L}{I|L};{[ES]|[DT]|[{I|L}C]}[YT]{I|L}AS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV][QT]{I|L}{I|L} 6.3839;5.6062;4.2703;3.417;3.1476;2.9534;1.034 +;-;-;-;-;-;- + 216 NaN NaN 122467 NaN 15572 3707 19276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19283 79.409 NaN 624100 35 0 25116 0.327 -1 0 88 479.2774935703601 956.5404342075202 2 479.2774658203125 MULTI HCD FTMS 0 0 0 19282 605425.875 0.5671083487539184 24 -0.6878128051757812 1 NaN NaN 1 Q 1 -1 13.737 0 0 1.4361 0 0 458.27277465513487 367.19729642271244 825.4700710778473 0 0 0 0 0 0.8252574989159953 0 0 0 Q 1.4361 - 27 + NaN NaN 169992.6 NaN 15573 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19284 79.414 NaN 911050 35 0 100230 0.261 + 32300 VYVAIQAVL 9 91 488.2973861810708 974.5802194289416 2 488.29815673828125 MULTI HCD FTMS 0 0 0 19282 414057.125 0.19997202468251274 7 -0.199951171875 2 Unmodified _VYVAIQAVL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 64.23631603340823 0.01165516075559909 1 [YV]VA{I|L}QAV{I|L} 9 0 + 66.41 0 0 6.8142 6.8142 87.998 0 0 0 9.559771852360797 7.7815125038364386 7.7815125038364386 7.7815125038364386 0 2.309894379144197 0.8239087409443188 0 0 + + [YV]VA{I|L}QAV{I|L};[YV]VA{I|L}QA{I|L}V;[YV]VA{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QAV{I|L};[YV]VA{I|L}[AG]A{I|L}V;{[VA]|[{I|L}G]}[YV]{I|L}QA{I|L}V;{[VA]|[{I|L}G]}[YV]{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}[AG]A{I|L}V;[YV]VA[TP]{[QV]|[N{I|L}]|[RA]|[KV]}V;{[VA]|[{I|L}G]}TV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}V 6.8142;6.0158;5.8694;5.8333;5.0709;5.0348;4.8885;4.09;1.6268;1.2321 +;-;-;-;-;-;-;-;-;- + 672 NaN NaN 217416.1 NaN 15574 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19285 79.417 NaN 627230 35 0 187830 0.261 + 8732 HHGAGAFF 8 46 422.19864156822445 842.3827302032489 2 422.1988220214844 MULTI HCD FTMS 0 0 0 19282 207972.375 0.22424396563436047 24 -0.6878128051757812 3 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.303596147388 0 677.303596147388 0 10 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 8 + NaN NaN 189345.6 NaN 15575 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19286 79.421 NaN 229840 35 0 21378 0.261 + 34428 YPETLGRLLIL 11 61 644.3871945702259 1286.7598362072517 2 644.3872680664062 MULTI HCD FTMS 0 0 0 19282 98730.1953125 0.1923390391358787 6 -0.16381072998046875 4 Unmodified _YPETLGRLLIL_ ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 41.34703777101937 0.12827471393888273 1 [EP]YT{I|L}{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L} 11 2 + 50.182 0 0 3.8998 3.8998 86.96 0 0 0 5.862435673934279 36.73834801383148 5.862435673934279 15.172203223519524 0 1.8182503180159344 0 0.6549471895720984 0 [EP]YT{I|L}{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L};[EP][{I|L}T]Y{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L} 3.8998;2.7207 -;- 82 NaN NaN 110829.2 NaN 15576 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19287 79.424 NaN 276750 35 0 38303 0.261 + 29688 VCLNNLPASDH 11 64 591.7826254583432 1181.5506979834863 2 591.7825927734375 MULTI HCD FTMS 0 0 0 19282 112988.4140625 0.33919358306770137 7 -0.199951171875 5 Unmodified _VCLNNLPASDH_ REV__COL4A3BP|p.R543L|1|0.13|ENSG00000113163|chr5:75381191-75381191|C/A|missense_variant 5.296884461304476 0.39569033063702824 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[QV]|[N{I|L}]|[RA]|[KV]}[DG]D{I|L}{[QN]|[E{I|L}]|[KN]} 10 -1 + 24.895 0 0 2.1069 2.1069 82.649 0 0 0 3.748162098248997 0.6246936830414995 0.6246936830414995 9.030899869919438 0 0 2 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[QV]|[N{I|L}]|[RA]|[KV]}[DG]D{I|L}{[QN]|[E{I|L}]|[KN]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[NV]|[RG]}[VS]D{I|L}{[QN]|[E{I|L}]|[KN]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[NV]|[RG]}WD{I|L}{[QN]|[E{I|L}]|[KN]} 2.1069;1.3426;1.2502 -;-;- 156 NaN NaN 128559.8 NaN 15577 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19288 79.427 NaN 386470 35 0 40711 0.261 + 26676 SYALLTYMI 9 59 545.778424484424 1089.542296035648 2 545.778564453125 MULTI HCD FTMS 0 0 0 19282 56486.046875 0.5732533910343762 1 -0.0327606201171875 6 Oxidation (M) _SYALLTYM(Oxidation (M))I_ ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS;nc|ENSG00000176890|P04818-3|TYMS 42.09456458481378 0.05572955244001856 1 DNY 3 8 26.198 0 0 2.4045 0 0 679.4093032646389 0 679.4093032646389 0 3.0102999566398125 0 0 0 0 0 0 0 DNY 2.4045 - 58 NaN NaN 138204.2 NaN 15578 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19289 79.431 NaN 179960 35 0 21365 0.261 + 35606 YYIFIPSKF 9 55 589.3188011551375 NaN 0 589.3182373046875 PEAK HCD FTMS 0 0 0 19282 38547.0703125 0.15672243403254563 74 -2.120635986328125 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 {I|L} 1 8 14.732 0 0 1.2521 0 0 737.413040687425 323.1039357246288 1060.5169764120537 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2521 + + 15 + NaN NaN 107034.2 NaN 15579 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19290 79.434 NaN 161490 35 0 9569.5 0.261 + 28745 TTARRLSIT 9 75 509.8037789060589 1017.5930048789178 2 509.8036804199219 MULTI HCD FTMS 0 0 0 19282 66353.84375 0.1842027049301212 23 -0.6549224853515625 8 Unmodified _TTARRLSIT_ ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B 7.289230182591677 0.29575926068275815 1 ST{[YC]|[HE]}{I|L}T{[TV]|[{I|L}S]} 8 6 19.927 0 0 1.9582 0 0 131.18277446248277 0 131.18277446248277 0 14.442059438411906 0 0 0 0 0 0.3807196863200844 0 ST{[YC]|[HE]}{I|L}T{[TV]|[{I|L}S]} 1.9582 - 160 + NaN NaN 106168.7 NaN 15580 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19291 79.437 NaN 183240 35 0 21597 0.261 -1 VFCTEDDLCS 10 54 594.7324755996633 1187.4503982661265 2 594.732177734375 MULTI HCD FTMS 0 0 0 19282 37854.16015625 0.5459136519635375 -1 0.0195465087890625 9 Carbamidomethyl (C) _VFCTEDDLC(Carbamidomethyl (C))S_ ENSG00000035681|ENST00000038176|NSMAF;ENST00000519858.1_1_8:59513803-59535956:-|nuORF;nc|ENSG00000035681|Q92636-2|NSMAF 1.6526216038709556 0.46655611578153744 1 N 1 -1 4.6041 0 0 0.38773 0 0 130.91963672611843 939.4711397760374 1070.3907765021559 0 0 0 0 0 0 0 0 0 N 0.38773 - 10 + NaN NaN 119698.3 NaN 15581 3708 19282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19293 79.442 NaN 554920 35 0 114700 0.327 + 5236 FFDPSLLHL 9 62 544.7925816744445 1087.5706104156889 2 544.792724609375 MULTI HCD FTMS 0 0 0 19292 196322.8125 0.6724038835117718 -2 0.05230712890625 1 Unmodified _FFDPSLLHL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 61.357469665136826 0.01568246967499496 1 PDY{I|L} 4 7 44.438 0 0 4.086 0 0 581.3527088849625 0 581.3527088849625 0 36.64651886415513 0 0 0 0.9247425010840047 0 0.3252574989159953 0 PDY{I|L} 4.086 - 184 NaN NaN 188473.8 NaN 15582 3709 19292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19294 79.447 NaN 507990 35 0 115970 0.261 + 25317 SCFNDHEPF 9 78 548.21400502266 1094.4134571121199 2 548.2141723632812 MULTI HCD FTMS 0 0 0 19292 113676.4375 0.922963780992974 1 -0.0229034423828125 2 Unmodified _SCFNDHEPF_ ENSG00000166896|ENST00000300145|ATP23 3.944395688203298 0.32111559684428237 1 [Y{I|L}]R 3 9 23.557 0 0 2.1524 0 0 0 659.1525372725292 659.1525372725292 5.597718523607966 0 0 0 0 0 2 0 0 [Y{I|L}]R 2.1524 - 217 NaN NaN 178332.2 NaN 15583 3709 19292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19295 79.45 NaN 872510 35 0 129100 0.261 + 21485 PYFNAPVYL 9 67 542.2793463216783 1082.5441397101565 2 542.2739868164062 MULTI HCD FTMS 0 0 0 19292 214638.4375 0.1554538665438323 -4 0.11142730712890625 3 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 77.98433622928108 0.006504613272346738 1 NAPVY{I|L} 6 3 64.206 0 0 5.931 0 0 407.1831532209 0 407.1831532209 0 36.01850649356642 0 0 0 1.9916440611282624 0 0 1.1549471895720984 + NAPVY{I|L} 5.931 + + 424 NaN NaN 213731.1 NaN 15584 3709 19292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19296 79.454 NaN 234950 35 0 25051 0.261 + 16445 LSPSHLVML 9 63 498.78219409854233 NaN 0 498.775634765625 PEAK HCD FTMS 0 0 0 19292 65082.328125 1 0 0 4 Unmodified _LSPSHLVML_ REV__ENSG00000181744|ENST00000315691|DIPK2A 18.13498045792455 0.19991664011725976 1 AA 2 -1 17.474 0 0 1.7552 0 0 522.2635936640785 328.18752149164646 850.4511151557249 0 0 0 0 0 1 0 0 0 AA 1.7552 - 129 + NaN NaN 118524.1 NaN 15585 3709 19292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19297 79.457 NaN 103870 35 0 5770.1 0.261 -1 EYLMGKFPFF 10 50 647.8129786285249 NaN 0 647.8134765625 PEAK HCD FTMS 0 0 0 19292 36648.4296875 0.8272093203286337 -2 0.05230712890625 5 Oxidation (M) _EYLM(Oxidation (M))GKFPFF_ ENSG00000164379|ENST00000296839|FOXQ1 22.736283301280096 0.25846987392193327 1 {M(Oxidation (M))|F}GK{M(Oxidation (M))|F} 4 -1 13.677 0 0 1.0573 0 0 405.1891153607622 406.1778963678344 811.3670117285966 0 0 0 0 0 0.7302046884880937 0 0 0 {M(Oxidation (M))|F}GK{M(Oxidation (M))|F} 1.0573 + + 20 + NaN NaN 93574.6 NaN 15586 3709 19292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19298 79.46 NaN 54352 35 0 4570.5 0.263 + 22223 QLYKWVPD 8 36 524.7777533343551 NaN 0 524.7244262695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QLYKWVPD_ REV__ENSG00000071794|ENST00000310053|HLTF;REV__ENST00000481663.1_1_3:148801501-148804285:-|nuORF 2.302733041254933 0.38822285293237185 1 Y 1 -1 6.9897 0 0 0.66725 0 0 643.337994606407 238.11924158267814 881.4572361890852 0 0 0 0 0 0 0 0 0 Y 0.66725 + + 3 + NaN NaN 92598.6 NaN 15587 3709 19292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19300 79.465 NaN 10775000 35 0 2213900 0.327 + 4540 EYLIVFPKL 9 72 561.3338653005517 1120.6531776679033 2 561.3342895507812 MULTI HCD FTMS 0 0 0 19299 7754806 1 0 0 1 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 152.41221235671458 6.276234901293889E-06 1 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 103.47 0 0 9.2334 9.2334 94.264 0 0 0 20.361753205006607 14.973024840566467 14.973024840566467 10.255762612236907 0 2.8494850021680094 1.5228787452803376 3.024227503252014 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}V{I|L}{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}{I|L}{M(Oxidation (M))|F}VPK{I|L};[YE]{I|L}V{M(Oxidation (M))|F}{I|L}PK{I|L};{I|L}{I|L}YEV{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}{I|L}V{M(Oxidation (M))|F}{I|L}[KP];{I|L}{I|L}YD{I|L}{M(Oxidation (M))|F}PK{I|L};{I|L}{I|L}YE{M(Oxidation (M))|F}VPK{I|L};{I|L}{I|L}V[YE]{M(Oxidation (M))|F}PK{I|L};{I|L}{I|L}YD{M(Oxidation (M))|F}{I|L}PK{I|L} 9.2334;8.3183;8.1431;7.4259;6.3805;5.8341;5.4653;5.2902;4.7551;4.573 +;-;-;-;-;-;-;-;-;- + 873 NaN NaN 934983.1 NaN 15588 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19301 79.47 NaN 1125900 35 0 409710 0.263 + 20702 PFSGFPSS 8 55 413.1929484024883 824.3713438717766 2 413.1935119628906 MULTI HCD FTMS 0 0 0 19299 764756.1875 0.22120930656686222 23 -0.6583633422851562 2 Unmodified _PFSGFPSS_ ENST00000539563.5_1_3:115528395-115528695:-|nuORF 2.302733041254933 0.5385759549224092 1 {I|L} 1 8 5.5065 0 0 0.66796 0 0 556.1923410415017 152.07161890201408 708.2639599435157 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.66796 - 7 + NaN NaN 262338.3 NaN 15589 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19302 79.473 NaN 442510 35 0 24857 0.261 + 20927 PLAFLVIMA 9 82 487.79078151675463 973.5670101003093 2 487.7909240722656 MULTI HCD FTMS 0 0 0 19299 373944.375 0.6024832568016772 26 -0.7501068115234375 3 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 5.230669730166228 0.3113646817964458 1 [KT]AQ{I|L} 5 7 8.3277 0 0 0.85538 0 0 0 429.21372400455317 429.21372400455317 4.259687322722809 0 0 0 0 0 0 0 0 [KT]AQ{I|L} 0.85538 - 124 + NaN NaN 153072.6 NaN 15590 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19303 79.477 NaN 715550 35 0 137940 0.261 + 10109 IFIDPGYQTF 10 66 600.8003296552803 1199.5861063773605 2 600.8005981445312 MULTI HCD FTMS 0 0 0 19299 356508.75 0.8131280463488717 3 -0.08858489990234375 4 Unmodified _IFIDPGYQTF_ ENSG00000121741|ENST00000610343|ZMYM2 71.70789743142352 0.01556163018108538 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]YQT{M(Oxidation (M))|F} 10 0 + 63.338 0 0 5.28 5.28 86.038 0 0 0 7.269987279362624 49.234914502315505 7.269987279362624 9.164539485499262 0 2.094187677400525 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]YQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]Y[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[PG]YQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[PG]Y[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RK]HHT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RK]{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}C(Carbamidomethyl (C))C(Carbamidomethyl (C))[KT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.28;4.516;4.2145;3.4505;1.5121;1.4457;0.6354 +;-;-;-;-;-;- + 440 NaN NaN 200689.2 NaN 15591 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19304 79.48 NaN 581500 35 0 151980 0.264 + 25067 SAAVLSLAI 9 36 422.7603502905947 843.5061476479895 2 422.760498046875 MULTI HCD FTMS 0 0 0 19299 225726.328125 0.8343804612514732 1 -0.03955841064453125 5 Unmodified _SAAVLSLAI_ REV__ENSG00000005700|ENST00000306270|IBTK;REV__ENST00000369751.2_1_6:82901346-82950269:-|nuORF;REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF;REV__nc|ENSG00000005700|Q9P2D0-2|IBTK 7.289230182591677 0.29575926068275815 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 169951.1 NaN 15592 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19305 79.483 NaN 1309300 35 0 223040 0.261 + 21486 PYFNAPVYL 9 68 542.2793463216783 1082.5441397101565 2 542.2789306640625 MULTI HCD FTMS 0 0 0 19299 488570.03125 0.3538513479686204 -3 0.0752105712890625 6 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 89.42679046578446 0.004540987215715461 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NAPVY{I|L} 9 0 + 75.715 0 0 6.9942 6.9942 92.875 0 0 0 9.889917747712644 47.527515650137104 9.889917747712644 20.757659435244733 0 2.086696871556164 0 0.4247425010840047 1.1549471895720984 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NAPVY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GGAPVY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[WK]PVY{I|L};[YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}APVY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[SA]|[TG]}[RD]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WY][QT]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WY]AAS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[SA]|[TG]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[H{I|L}][RH] 6.9942;5.0767;4.6173;2.6736;2.0654;1.6528;1.6503;1.2991;1.1766;0.91971 +;-;-;-;-;-;-;-;-;- + 683 NaN NaN 280173.9 NaN 15593 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19306 79.487 NaN 227080 35 0 80324 0.261 + 33566 YILMKVPK 8 51 496.3038712465691 990.5931895599382 2 496.3041076660156 MULTI HCD FTMS 0 0 0 19299 110519.875 0.35204244454288003 25 -0.7172622680664062 7 Unmodified _YILMKVPK_ REV__ENSG00000115806|ENST00000234160|GORASP2;REV__ENST00000442798.5_1_2:171793138-171822637:+|nuORF;REV__nc|ENSG00000115806|Q9H8Y8-3|GORASP2 6.354104778181461 0.5325651638111438 1 [Y{I|L}]{I|L} 3 -1 23.557 0 0 2.378 0 0 0 598.3362675230819 598.3362675230819 14.604093769761873 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.378 + + 36 NaN NaN 110345.8 NaN 15594 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19307 79.49 NaN 363100 35 0 59182 0.261 + 32267 VYTVVDEMFL 10 62 616.299301352522 1230.5840497718439 2 616.2996215820312 MULTI HCD FTMS 0 0 0 19299 156832.875 0.03591063081042669 -17 0.49671173095703125 8 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 166.44778350782605 5.805597275734801E-11 1 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 104.42 0 0 8.4855 8.4855 95.209 0 0 0 3.7751372576825304 81.1449143352091 3.7751372576825304 19.489700043360187 0 3.055462187404089 0 2.749134866972623 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.4855;6.9017;5.8663;5.7046;5.6029 +;-;-;-;- + 1079 NaN NaN 143425.9 NaN 15595 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19308 79.493 NaN 404830 35 0 32749 0.261 + 7255 FSYTISPYS 9 90 532.7494701799852 1063.4843874267704 2 532.75 MULTI HCD FTMS 0 0 0 19299 125725.5 0.799138970512799 1 -0.03955841064453125 9 Unmodified _FSYTISPYS_ REV__CHRNB3|p.F222S|1|0.5|ENSG00000147432|chr8:42731972-42731972|T/C|missense_variant 26.88365393820708 0.12808753336095696 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]YSMC{I|L} 9 -1 + 51.739 0 0 4.8651 4.8651 84.878 0 0 0 4.434524456659126 10.509366982867611 4.434524456659126 8.47601888548293 0 0.28872548999643577 1.6989700043360187 1.031234684152075 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]YSMC{I|L};{[YC]|[HE]}V[W{M(Oxidation (M))|F}]VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MS]|[{M(Oxidation (M))|F}A]}[{M(Oxidation (M))|F}V]VT{M(Oxidation (M))|F};[QT]{[RE]|[WV]}PSMC{I|L};{[SA]|[TG]}A{[RE]|[WV]}PSMC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MS]|[{M(Oxidation (M))|F}A]}[{M(Oxidation (M))|F}V]MC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}[YT]MC{I|L};{[YC]|[HE]}VSY{[TV]|[{I|L}S]}{[ET]|[MV]};{[WT]|[RM]}{M(Oxidation (M))|F}[YT]VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}V]MC{I|L} 4.8651;4.0681;3.8734;3.3739;3.3309;3.3283;3.164;2.3177;2.3037;1.9713 -;-;-;-;-;-;-;-;-;- 805 NaN NaN 155400.9 NaN 15596 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19309 79.497 NaN 633630 35 0 69685 0.261 + 2866 DYPRYLFEI 9 75 608.3057197721321 1214.596886611064 2 608.305908203125 MULTI HCD FTMS 0 0 0 19299 249874.390625 0.3321325896801717 -3 0.0752105712890625 10 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 78.06048673739656 0.006479972202176041 1 {[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 81.934 0 0 6.7457 6.7457 93.153 0 0 0 3.0767607840314213 3.0767607840314213 3.0767607840314213 28.67931555708239 0 2.4291746928241125 2 0.3807196863200844 0.2742275032520141 + + {[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L};{[QG]|[NA]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AY{I|L}{M(Oxidation (M))|F}E{I|L};{[QG]|[NA]}[WP][EP]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[EP][EP]{I|L}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6.7457;4.3845;2.9248;0.58016 +;-;-;- + 422 NaN NaN 179782.6 NaN 15597 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19310 79.5 NaN 131750 35 0 7728.2 0.261 + 16189 LPVLESFKVSF 11 54 633.3608731084701 1264.70719328374 2 633.3605346679688 MULTI HCD FTMS 0 0 0 19299 77909.09375 0.5289992063179678 2 -0.05579376220703125 11 Unmodified _LPVLESFKVSF_ ENSG00000118137|ENST00000236850|APOA1 57.2037768669896 0.051836674997482644 1 {I|L}PV{I|L}E 5 6 55.177 0 0 4.3629 0 0 0 710.3508299557678 710.3508299557678 19.739605237541866 0 0 0 0 1.3494850021680094 0 0.8494850021680094 0 + {I|L}PV{I|L}E 4.3629 + + 95 + NaN NaN 106000.6 NaN 15598 3710 19299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19312 79.505 NaN 3086200 35 0 434290 0.327 + 29881 VFDIHVIDF 9 115 552.7898891660711 1103.5652253989422 2 552.7903442382812 MULTI HCD FTMS 0 0 0 19311 2116734.25 0.6853533627124686 2 -0.0490264892578125 1 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 131.26759243768294 0.0005280990274065272 1 V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F} 9 0 + 102.85 0 0 9.3194 9.3194 89.402 0 0 0 64.57428060068978 16.478174818886373 16.478174818886373 2.1741655787624836 0 3.0189301784845295 0 1.9626028580530637 0 + + V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F};V{M(Oxidation (M))|F}D{I|L}H{I|L}VD{M(Oxidation (M))|F};{M(Oxidation (M))|F}VD{I|L}HV{I|L}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}VD{I|L}H{I|L}VD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{I|L}D{M(Oxidation (M))|F};[DV]{M(Oxidation (M))|F}{I|L}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HVEV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}H{I|L}VD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HVEV{M(Oxidation (M))|F} 9.3194;9.1224;8.5672;8.3702;7.0839;6.8474;5.9524;5.9368;5.8754;5.7004 +;-;-;-;+;-;-;-;-;- + 3559 + NaN NaN 455688.4 NaN 15599 3711 19311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19313 79.509 NaN 1014700 35 0 296730 0.261 + 3450 EFSSALFEL 9 74 521.7582153276048 1041.5018777220096 2 521.7583618164062 MULTI HCD FTMS 0 0 0 19311 440261.4375 0.575796479378823 2 -0.0490264892578125 2 Unmodified _EFSSALFEL_ REV__ENSG00000241945|ENST00000291576|PWP2 64.23631603340823 0.01165516075559909 1 {M(Oxidation (M))|F}E{I|L} 3 -1 34.495 0 0 3.312 0 0 634.2961655329846 0 634.2961655329846 0 19.010234424404686 0 0 0 0.75 0 0.3807196863200844 0 {M(Oxidation (M))|F}E{I|L} 3.312 + + 340 NaN NaN 233984.7 NaN 15600 3711 19311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19314 79.513 NaN 781570 35 0 79089 0.261 + 20187 NYLDRFLSL 9 106 570.8060184248639 1139.5974839165276 2 570.8062133789062 MULTI HCD FTMS 0 0 0 19311 375929.03125 0.011031400331204028 28 -0.7973709106445312 3 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 87.25819977447905 0.004597812622239197 1 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 87.354 0 0 7.6653 7.6653 94.921 0 0 0 2.194705993734601 2.194705993734601 2.194705993734601 31.49288766643715 0 2.5356668758921828 1.6989700043360187 0.23965182871044374 0.6747425010840047 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};{[TV]|[{I|L}S]}{[WT]|[RM]}{[CA]|SS}{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR[{I|L}T]V{M(Oxidation (M))|F};[YN]{I|L}DR{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR[Y{I|L}]A{I|L};[YN]{I|L}P{M(Oxidation (M))|F}{I|L}Q[{M(Oxidation (M))|F}V];[YN]{I|L}DR[{I|L}A]Y{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[MT][RV]{[CA]|SS}{M(Oxidation (M))|F}{I|L}S{I|L} 7.6653;4.9018;4.6421;4.4014;4.3412;4.1983;4.0401;3.8491;3.702;3.2565 +;-;-;-;-;-;-;-;-;- + 1320 NaN NaN 212023.4 NaN 15601 3711 19311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19315 79.516 NaN 287550 35 0 72903 0.261 + 20073 NYIPRFWTF 9 57 622.3163957915608 1242.6182386499215 2 622.3168334960938 MULTI HCD FTMS 0 0 0 19311 164583.703125 0.011982888482794262 63 -1.79925537109375 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 45.69961567697781 0.039180348357221985 1 [YN]{I|L} 3 6 44.507 0 0 3.5817 0 0 0 849.4051801348566 849.4051801348566 33.18127791232534 0 0 0 0 1 1.6989700043360187 0 0.7059771852360797 + [YN]{I|L} 3.5817 + + 134 NaN NaN 125540.4 NaN 15602 3711 19311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19317 79.521 NaN 891940 35 0 118750 0.327 + 13438 KYPENFFLL 9 83 585.8132425088911 1169.6119320845821 2 585.8135375976562 MULTI HCD FTMS 0 0 0 19316 571988.0625 0.002885057624176077 145 -4.1504364013671875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 74.19965305603844 0.007729275404663812 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 89.209 0 0 7.6273 7.6273 88.535 0 0 0 4.963352341680476 52.83530282090174 4.963352341680476 5.568109453757657 0 2.579689690656103 0 0.28872548999643577 1.4361818737241734 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 7.6273;7.1512;6.84;6.3639;6.3639;6.2571;6.1991;5.7231;5.4118;5.276 +;-;-;-;-;-;-;-;-;- + 1504 NaN NaN 212028.3 NaN 15603 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19318 79.525 NaN 1055300 35 0 336180 0.261 + 15817 LPIDGANDLF 10 66 537.777016218253 1073.539479503306 2 537.7772216796875 MULTI HCD FTMS 0 0 0 19316 665009.9375 0.6873116542284926 2 -0.0523529052734375 2 Unmodified _LPIDGANDLF_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF;nc|ENSG00000198408|O60502-4|OGA 93.16586880292088 0.0007594237434582029 1 [{I|L}P]{I|L}DQND{I|L}{M(Oxidation (M))|F} 9 2 + 78.911 0 0 7.3506 7.3506 88.239 0 0 0 4.762036441594191 57.941993906176776 4.762036441594191 6.00833760139686 0 2.4291746928241125 0 0.6549471895720985 0.4247425010840047 [{I|L}P]{I|L}DQND{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]QND{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}DQGGD{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}D[AG]ND{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P][AG]ND{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]QGGD{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]QND{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}D[AG]GGD{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]QGGD{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP][AG]ND{I|L}{M(Oxidation (M))|F} 7.3506;6.7909;6.4928;6.4928;5.9331;5.9331;5.5625;5.2435;4.7047;4.7047 -;-;-;+;-;-;-;-;-;- + 447 NaN NaN 241370.7 NaN 15604 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19319 79.529 NaN 1357000 35 0 311830 0.261 + 7814 FYPYGLQTF 9 93 568.2756573282156 1134.5367617232312 2 568.2763671875 MULTI HCD FTMS 0 0 0 19316 614979.375 0.6741600516489693 3 -0.08849334716796875 3 Unmodified _FYPYGLQTF_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant 78.7280429016045 0.006263961847259105 1 {I|L}QT{M(Oxidation (M))|F} 4 5 48.321 0 0 4.2591 0 0 627.2675080853944 0 627.2675080853944 0 37.86297847284061 0 0 0 1.7614393726401687 0 0.4247425010840047 0.3807196863200844 + {I|L}QT{M(Oxidation (M))|F} 4.2591 + + 1472 + NaN NaN 288618.9 NaN 15605 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19320 79.532 NaN 543080 35 0 72386 0.261 + 11386 IYPDSFTVL 9 61 527.7764795365985 1053.5384061399968 2 527.7765502929688 MULTI HCD FTMS 0 0 0 19316 252174.828125 0.7859855819429683 3 -0.08849334716796875 4 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 88.90359156742426 0.00455469703666567 1 [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L} 9 0 + 80.797 0 0 7.6691 7.6691 95.239 0 0 0 18.630449684300103 65.90288749933073 18.630449684300103 36.74865027867404 0 2.1237125054200234 1.5228787452803376 1.1989700043360187 0 + + [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L};[Y{I|L}][DP]S[{I|L}A]Y{I|L};[Y{I|L}][DP]S{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L} 7.6691;4.181;3.9705 +;-;- + 138 NaN NaN 163016.3 NaN 15606 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19321 79.536 NaN 337200 35 0 40364 0.261 + 35033 YTIAQKYLF 9 58 573.8129437717441 NaN 0 573.7949829101562 PEAK HCD FTMS 0 0 0 19316 9451.853515625 0.942947692487554 -1 0.0162353515625 5 Unmodified _YTIAQKYLF_ ENSG00000066185|ENST00000372565|ZMYND12;ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant 11.640296217721598 0.23883959125015683 1 TA{I|L}QQY 6 6 29.884 0 0 2.6085 0 0 276.1956984792319 162.0559023492797 438.25160082851164 0 0 0 0 0 0 0 0 0.3252574989159953 TA{I|L}QQY 2.6085 - 177 + NaN NaN 131428.4 NaN 15607 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19322 79.539 NaN 401690 35 0 44665 0.261 -1 LPLHEHGMF 9 70 548.7677656739922 1095.5209784147844 2 548.7684326171875 MULTI HCD FTMS 0 0 0 19316 92769.578125 0.4145239164941303 1 -0.0327911376953125 6 Oxidation (M) _LPLHEHGM(Oxidation (M))F_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|181|2|anti-sense 36.04419817259434 0.08350412372117409 1 {I|L}P{I|L}D{M(Oxidation (M))|F}[EC]{I|L} 8 -1 57.75 0 0 5.2715 0 0 0 162.0560701959594 162.0560701959594 31.463570890648626 0 0 0 0 1.9559771852360797 1.5228787452803376 0.28872548999643577 0 {I|L}P{I|L}D{M(Oxidation (M))|F}[EC]{I|L} 5.2715 - 343 + NaN NaN 137619.9 NaN 15608 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19323 79.542 NaN 262700 35 0 18752 0.261 + 18647 MYGLFQTSF 9 72 555.2520052767209 1108.4894576202416 2 555.2523803710938 MULTI HCD FTMS 0 0 0 19316 84170.3671875 0.3424843523744566 6 -0.1737518310546875 7 Oxidation (M) _M(Oxidation (M))YGLFQTSF_ ENSG00000077147|ENST00000371142|TM9SF3 41.8396318013385 0.056899836730939755 1 {M(Oxidation (M))|F}QTS{M(Oxidation (M))|F} 5 4 59.196 0 0 5.3402 0 0 480.2059803693375 0 480.2059803693375 0 39.73197507588033 0 0 0 2 0 0.4247425010840047 0 + {M(Oxidation (M))|F}QTS{M(Oxidation (M))|F} 5.3402 + + 230 NaN NaN 121828.4 NaN 15609 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19324 79.546 NaN 361740 35 0 23395 0.261 + 24451 RYLDLFTSF 9 71 581.3004901821857 1160.5864274311714 2 581.3011474609375 MULTI HCD FTMS 0 0 0 19316 88485.484375 0.009924876479511863 29 -0.836517333984375 8 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 40.23920728925047 0.06424668180817725 1 D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6 3 55.099 0 0 4.7475 0 0 432.24812514472814 0 432.24812514472814 0 29.156687756324686 0 0 0 1.4247425010840047 0 0.7742275032520141 0 + D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4.7475 + + 233 NaN NaN 156325.7 NaN 15610 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19325 79.549 NaN 375190 35 0 46557 0.261 + -1 FSLTLCHPM 9 68 532.7494701799852 1063.4843874267704 2 532.767822265625 MULTI HCD FTMS 0 0 0 19316 37456.0546875 0.23807893372816055 3 -0.08849334716796875 9 Oxidation (M) _FSLTLCHPM(Oxidation (M))_ REV__ENST00000531310.1_1_8:145744830-145744899:+|nuORF 21.74664581756881 0.17247014374749275 1 TV[{M(Oxidation (M))|F}V]SVT{M(Oxidation (M))|F} 8 -1 48.167 0 0 4.5292 0 0 165.03901965978406 0 165.03901965978406 0 17.397000433601875 0 0 0 0 0 1.4802046884880937 0 TV[{M(Oxidation (M))|F}V]SVT{M(Oxidation (M))|F} 4.5292 - 605 + NaN NaN 140438.6 NaN 15611 3712 19316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19327 79.554 NaN 4664600 35 0 1793700 0.327 + 17300 LYPQFMFHL 9 65 598.3019807680839 1194.5894086029678 2 598.3024291992188 MULTI HCD FTMS 0 0 0 19326 2738321.5 1 0 0 1 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 104.79918948944588 0.003791450360204016 1 {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 97.616 0 0 8.1715 8.1715 94.227 0 0 0 67.26158414573064 9.009461452434238 9.009461452434238 16.267959391884546 0 2.548455006504028 2 0 0.7059771852360797 + + {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]M{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}M[Y{I|L}]{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L}Y{I|L};[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}[Y{I|L}]H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[YV]E[HN]H{I|L};[QP]{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 8.1715;6.8097;6.3986;3.9289;3.5103;2.8398;2.765;2.2738;1.7111;0.86658 +;-;+;-;-;-;-;-;-;- + 858 + NaN NaN 718087.2 NaN 15612 3713 19326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19328 79.558 NaN 558370 35 0 24225 0.263 -1 0 87 479.2774935703601 956.5404342075202 2 479.277587890625 MULTI HCD FTMS 0 0 0 19326 573713.0625 0.5374026465798618 29 -0.8365859985351562 2 NaN NaN 1 Q 1 -1 11.281 0 0 1.1794 0 0 458.27309265511366 367.1972117896206 825.4703044447342 0 0 0 0 0 0.7302046884880937 0 0 0 Q 1.1794 - 36 + NaN NaN 168756.7 NaN 15613 3713 19326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19329 79.562 NaN 281820 35 0 60122 0.261 -1 0 72 501.29058431079056 1000.5666156883811 2 501.29010009765625 MULTI HCD FTMS 0 0 0 19326 118284.4453125 0.20793577106214348 26 -0.7483444213867188 3 NaN NaN 1 [RH][{I|L}V][KC]V{M(Oxidation (M))|F} 8 -1 [RH][{I|L}V][KC]V + + 13.099 -22.007 -2.6341 1.3092 1.3092 58.836 0 0 0 0 0.5360498482393439 0 0 0 0 0 0 0 [RH][{I|L}V][KC]V{M(Oxidation (M))|F} 1.3092 - 91 + NaN NaN 140324.8 NaN 15614 3713 19326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19330 79.565 NaN 555080 35 0 95346 0.261 + 12985 KYILVVPLI 9 57 529.3546809375133 1056.6948089418265 2 529.35498046875 MULTI HCD FTMS 0 0 0 19326 138212.484375 0.8910968977320727 -3 0.08858489990234375 4 Unmodified _KYILVVPLI_ ENSG00000070366|ENST00000263073|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-2|SMG6;nc|ENSG00000070366|Q86US8-3|SMG6 21.74664581756881 0.17247014374749275 1 [Y{I|L}]K[{I|L}V]V{I|L}P{I|L} 9 4 + 55.864 0 0 5.2866 5.2866 84.271 0 0 0 5.228787452803374 11.249387366082999 5.228787452803374 5.228787452803374 0 1 1.6989700043360187 0 0 [Y{I|L}]K[{I|L}V]V{I|L}P{I|L};[{I|L}P][VP][{I|L}P]V{I|L}P{I|L} 5.2866;4.7918 -;- 93 NaN NaN 164581.3 NaN 15615 3713 19326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19331 79.568 NaN 725550 35 0 61222 0.261 + -1 QMITMVREME 10 80 642.2917506283908 1282.5689483235815 2 642.2906494140625 MULTI HCD FTMS 0 0 0 19326 103452.3984375 0.964091735407162 2 -0.05570220947265625 5 Oxidation (M) _QM(Oxidation (M))ITMVREME_ REV__ENST00000445477.1_1_22:31955550-31955922:+|nuORF 20.41453444215458 0.3201613495159799 1 [YQ]EW{I|L}RE{I|L} 8 -1 54.956 0 0 4.2848 0 0 0 161.9898562714176 161.9898562714176 29.01399842274671 0 0 0 0 0 1.154901959985743 1.1237125054200234 2.7658715643802765 [YQ]EW{I|L}RE{I|L} 4.2848 - 1300 NaN NaN 192456.1 NaN 15616 3713 19326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19333 79.573 NaN 587270 35 0 104250 0.327 + 5237 FFDPSLLHL 9 68 544.7925816744445 1087.5706104156889 2 544.7926025390625 MULTI HCD FTMS 0 0 0 19332 152857.46875 0.5235354684585078 3 -0.0985260009765625 1 Unmodified _FFDPSLLHL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 52.268347100219714 0.028397529699942435 1 PDY{I|L} 4 7 33.404 0 0 3.0714 0 0 581.3550282209 0 581.3550282209 0 15.479917914819055 0 0 0 0.9247425010840047 0 0 0 PDY{I|L} 3.0714 - 573 NaN NaN 168479.9 NaN 15617 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19334 79.578 NaN 977500 35 0 53003 0.261 + 22731 QYEIWRELF 9 84 642.3244181473788 1282.6342833615574 2 642.82666015625 MULTI HCD FTMS 0 0 0 19332 135378.5625 0.2157874125528583 -5 0.13105010986328125 2 Unmodified _QYEIWRELF_ ENSG00000168092|ENST00000527958|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-2|PAFAH1B2;nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-4|PAFAH1B2 121.34585337138759 0.001129813327125052 1 [YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F} 9 0 + 81.759 0 0 6.3743 6.3743 84.993 0 0 0 22.385153977734753 16.47817481888636 16.47817481888636 2.9267405679224368 0 2.2302046884880937 0 1.4802046884880937 2.7856668758921828 + + [YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F};[YQ]EW{I|L}RE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}QYWRE{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[TP][{M(Oxidation (M))|F}T]RE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[AG]YWRE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}QYW[VG]E{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E[RV]{[MS]|[{M(Oxidation (M))|F}A]}E{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[WT]|[RM]}{[DA]|[EG]}RE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[AG]YW[VG]E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}RW[YQ]E{I|L}{M(Oxidation (M))|F} 6.3743;6.1461;4.629;3.9769;3.9111;3.9111;3.8929;3.2151;3.1966;2.1703 +;-;-;-;-;-;-;-;-;- + 1364 NaN NaN 231920.8 NaN 15618 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19335 79.581 NaN 387840 35 0 124450 0.264 + 8733 HHGAGAFF 8 35 422.19864156822445 842.3827302032489 2 422.1988525390625 MULTI HCD FTMS 0 0 0 19332 112632.265625 0.12144452311097885 30 -0.8693084716796875 3 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3041454637943 0 677.3041454637943 0 -0.9691001300805624 -0.9691001300805624 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 1 + NaN NaN 141748.8 NaN 15619 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19336 79.585 NaN 186070 35 0 33520 0.261 + 18404 MPSLENLDL 9 57 516.2573073364503 1030.5000617397004 2 516.2578125 MULTI HCD FTMS 0 0 0 19332 66418.6875 0.5677389023655254 1 -0.03614044189453125 4 Unmodified _MPSLENLDL_ ENSG00000277586|ENST00000610854|NEFL 24.990960013464015 0.14443998892849796 1 N{I|L}D{I|L} 4 5 48.047 0 0 4.6625 0 0 557.252733299025 0 557.252733299025 0 31.84955642535897 0 0 0 1.2302046884880937 0 0 0.3807196863200844 + N{I|L}D{I|L} 4.6625 + + 75 NaN NaN 104895.3 NaN 15620 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19337 79.588 NaN 397410 35 0 66125 0.261 + 15564 LPDQTLPIL 9 55 505.29993776610104 1008.5853225990021 2 505.29998779296875 MULTI HCD FTMS 0 0 0 19332 85867.4765625 0.44400946753785037 -4 0.10814666748046875 5 Unmodified _LPDQTLPIL_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 36.12702656103203 0.08312389501731911 1 {I|L}P{I|L}{I|L} 4 5 42.691 0 0 4.2327 0 0 554.2714100568375 0 554.2714100568375 0 31.36623162815269 0 0 0 1.0752574989159953 0 0 0 + {I|L}P{I|L}{I|L} 4.2327 + + 61 NaN NaN 142689.5 NaN 15621 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19338 79.591 NaN 118300 35 0 5445.2 0.261 + 28746 TTARRLSIT 9 59 509.8037789060589 1017.5930048789178 2 509.8039245605469 MULTI HCD FTMS 0 0 0 19332 76252.7421875 0.2116827085737089 29 -0.846466064453125 6 Unmodified _TTARRLSIT_ ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B 1.844237919475145 0.33703635659052655 1 V 1 9 3.9794 0 0 0.39106 0 0 691.3992620584085 224.0970400445922 915.4963021030006 0 0 0 0 0 0 0 0 0 V 0.39106 - 29 + NaN NaN 95990.8 NaN 15622 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19339 79.595 NaN 94613 35 0 5567.2 0.261 + -1 AMKVTPAVF 9 52 490.2686512029637 NaN 0 490.2684326171875 PEAK HCD FTMS 0 0 0 19332 36090.234375 0.2618568365179625 29 -0.846466064453125 7 Oxidation (M) _AM(Oxidation (M))KVTPAVF_ REV__ENSG00000015133|ENST00000389857|CCDC88C;REV__nc|ENSG00000015133|Q9P219-2|CCDC88C;REV__nc|ENSG00000015133|Q9P219-3|CCDC88C 6.723162845929126 0.26266733336404485 1 P 1 -1 9.6041 0 0 0.98149 0 0 533.2885098260463 345.1528719537719 878.4413817798181 0 0 0 0 0 0.5 0 0 0 P 0.98149 + + 16 + NaN NaN 119237.3 NaN 15623 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19340 79.598 NaN 74615 35 0 9211.9 0.261 + 8068 GIESAELVF 9 28 482.7529254026196 NaN 0 482.7528076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _GIESAELVF_ REV__ENSG00000119913|ENST00000646139|TECTB 20.453626601364224 0.18435338882370536 1 V{I|L}E 3 -1 29.693 0 0 3.0818 0 0 165.0781674242249 454.1931246393188 619.2712920635437 0 0 0 0 0 1.5 0 0 0 V{I|L}E 3.0818 - 11 + NaN NaN 108359.3 NaN 15624 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19341 79.601 NaN 138090 35 0 17064 0.261 + -1 PECPMWCLL 9 51 611.2595878009336 1220.504622668667 2 611.2601928710938 MULTI HCD FTMS 0 0 0 19332 12604.1640625 0.267180481335673 1 -0.03614044189453125 9 2 Carbamidomethyl (C),Oxidation (M) _PEC(Carbamidomethyl (C))PM(Oxidation (M))WC(Carbamidomethyl (C))LL_ REV__ENST00000559285.1_1_15:67722734-67752085:-|nuORF 4.3292370932331545 0.3181982124262546 1 {I|L}{I|L} 2 -1 24.464 0 0 2.0044 0 0 976.3281117169937 0 976.3281117169937 0 23.494850021680094 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L} 2.0044 + + 10 NaN NaN 117979.3 NaN 15625 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19342 79.605 NaN 85216 35 0 18796 0.264 + 20483 PCPGARHH 8 40 437.7089915299629 873.4034301267258 2 437.70941162109375 MULTI HCD FTMS 0 0 0 19332 31850.609375 0.33893621556622583 -4 0.10814666748046875 10 Unmodified _PCPGARHH_ REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 92248.2 NaN 15626 3714 19332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19344 79.609 NaN 5596900 35 0 1172300 0.327 + 4541 EYLIVFPKL 9 67 561.3338653005517 1120.6531776679033 2 561.334228515625 MULTI HCD FTMS 0 0 0 19343 2851167.5 0.3676645811642483 5 -0.14115142822265625 1 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 139.13845188893973 5.0762478717762276E-05 1 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 104.6 0 0 9.3336 9.3336 94.657 0 0 0 23.2319095436452 14.973024840566467 14.973024840566467 11.505149978319906 0 2.8494850021680094 1.5228787452803376 2.9604093769761874 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}V{I|L}{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}V{M(Oxidation (M))|F}{I|L}PK{I|L} 9.3336;8.307;7.146 +;-;- + 478 NaN NaN 475402.7 NaN 15627 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19345 79.614 NaN 2485500 35 0 219910 0.261 + 17256 LYPLTNYTF 9 106 566.289701364897 1130.564849796594 2 566.2974243164062 MULTI HCD FTMS 0 0 0 19343 775353.25 0.14695970854961318 -9 0.25229644775390625 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 191.38036244623 2.972967745938989E-13 1 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 111.65 0 0 9.8759 9.8759 94.673 0 0 0 6.970862912880307 6.970862912880307 6.970862912880307 9.916440611282624 0 2.5356668758921828 1.3979400086720375 1.341129063296272 0.7302046884880937 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]PK{[CP]|[EA]}YT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGTY{M(Oxidation (M))|F};[Y{I|L}]PK{M(Oxidation (M))|F}TDT{M(Oxidation (M))|F} 9.8759;8.9988;8.4155;7.8086;7.5038;6.6267;6.0435;5.7371;5.4366;5.3206 +;-;-;-;-;-;-;-;-;- + 4110 NaN NaN 472886.2 NaN 15628 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19346 79.617 NaN 377510 35 0 20655 0.261 + 24452 RYLDLFTSF 9 73 581.3004901821857 1160.5864274311714 2 581.3026733398438 MULTI HCD FTMS 0 0 0 19343 70423.421875 0.007898965217976507 32 -0.9184188842773438 3 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 28.494509381512117 0.11816142465008336 1 {I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5 4 47.479 0 0 4.091 0 0 547.2758656232437 0 547.2758656232437 0 23.526909627198407 0 0 0 1.305462187404089 0 0.7742275032520141 0 + {I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4.091 + + 232 NaN NaN 143027.2 NaN 15629 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19347 79.621 NaN 233760 35 0 16373 0.261 + 35607 YYIFIPSKF 9 60 589.3188011551375 NaN 0 589.3185424804688 PEAK HCD FTMS 0 0 0 19343 58146.8984375 0.23641027400240833 81 -2.3381118774414062 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 {I|L} 1 8 14.732 0 0 1.2521 0 0 737.4133458632062 323.1039141773444 1060.5172600405506 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2521 + + 38 + NaN NaN 123350.5 NaN 15630 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19348 79.624 NaN 226210 35 0 54279 0.261 + -1 IMEFYMGPSF 10 54 619.2668664706667 1236.5191800081334 2 619.2665405273438 MULTI HCD FTMS 0 0 0 19343 71405.5 0.3485272471854413 -4 0.10472869873046875 5 Oxidation (M) _IMEFYM(Oxidation (M))GPSF_ REV__ENSG00000116977|ENST00000366584|LGALS8;REV__ENST00000489586.6_1_1:236706790-236711458:+|nuORF;REV__nc|ENSG00000116977|O00214-2|LGALS8 6.2057823575117 0.44245551207394906 1 YS{M(Oxidation (M))|F} 3 -1 27.167 0 0 2.1971 0 0 821.3452625959 0 821.3452625959 0 16.197887582883936 0 0 0 0.8494850021680094 0 0 0 YS{M(Oxidation (M))|F} 2.1971 - 28 NaN NaN 122816.4 NaN 15631 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19349 79.627 NaN 148900 35 0 18054 0.263 -1 VYMLAASLL 9 51 498.7747379562371 995.5349229792743 2 498.77545166015625 MULTI HCD FTMS 0 0 0 19343 31887.546875 0.3962235724333019 8 -0.22315216064453125 6 Oxidation (M) _VYM(Oxidation (M))LAASLL_ ENSG00000143753|ENST00000323699|DEGS1 36.04419817259434 0.08350412372117409 1 A{[TV]|[{I|L}S]}{I|L} 4 -1 23.984 0 0 2.4092 0 0 593.2880300751408 0 593.2880300751408 0 7.161903266879719 0 0 0 1 0 0.3807196863200844 0 A{[TV]|[{I|L}S]}{I|L} 2.4092 + + 36 NaN NaN 103330.2 NaN 15632 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19350 79.631 NaN 83824 35 0 8519.7 0.261 -1 LAKMCFLMIF 10 44 624.812374308596 1247.6101956839918 2 624.802001953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _LAKM(Oxidation (M))CFLM(Oxidation (M))IF_ ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3 1.844237919475145 0.46554186016084764 1 AVDE{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7 -1 25.706 0 0 2.0604 0 0 408.2219643380918 0 408.2219643380918 0 25.617063521379958 0 0 0 0 0 0 0 AVDE{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.0604 - 49 + NaN NaN 106446.9 NaN 15633 3715 19343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19352 79.636 NaN 1936600 35 0 358260 0.327 + 21487 PYFNAPVYL 9 74 542.2793463216783 1082.5441397101565 2 542.279541015625 MULTI HCD FTMS 0 0 0 19351 1249160.5 0.9047160048340681 3 -0.0952606201171875 1 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 89.42679046578446 0.004540987215715461 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NAPVY{I|L} 9 0 + 85.927 0 0 7.9375 7.9375 94.598 0 0 0 10.444539621753535 64.72865638833312 10.444539621753535 21.95046257204389 0 2.305462187404089 0 0.6307196863200843 1.274227503252014 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NAPVY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GGAPVY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NA[KT]{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WQ][{I|L}T]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GGA[KT]{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[H{I|L}][RH];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GG[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WY][QT]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WQ][YT]{I|L}{I|L} 7.9375;5.9098;2.7407;2.1436;2.0468;1.4978;1.3552;1.1912;1.149;1.149 +;-;-;-;-;-;-;-;-;- + 987 NaN NaN 374746.6 NaN 15634 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19353 79.64 NaN 2777100 35 0 233070 0.261 + 17257 LYPLTNYTF 9 106 566.289701364897 1130.564849796594 2 566.290283203125 MULTI HCD FTMS 0 0 0 19351 1328507.75 0.25180407994150067 -8 0.22612762451171875 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 191.38036244623 2.972967745938989E-13 1 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 113.1 0 0 10.004 10.004 95.845 0 0 0 15.268477219983225 8.138181262758266 8.138181262758266 13.895840698003 0 2.579689690656103 1.5228787452803376 1.3169015600442577 0.7302046884880937 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]T[Y{I|L}]NYT{M(Oxidation (M))|F};[{I|L}P]T[Y{I|L}]NTY{M(Oxidation (M))|F} 10.004;8.7748;8.6534;8.5436;7.5846;7.4243;7.193;6.2341;6.0897;4.8606 +;-;-;-;-;-;-;-;-;- + 5685 NaN NaN 521468.2 NaN 15635 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19354 79.644 NaN 1034400 35 0 124950 0.261 + 2867 DYPRYLFEI 9 83 608.3057197721321 1214.596886611064 2 608.3060913085938 MULTI HCD FTMS 0 0 0 19351 625735.375 0.8317263327122655 3 -0.0952606201171875 3 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 69.33821966488729 0.009302356455414924 1 {[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 81.348 0 0 6.6975 6.6975 93.727 0 0 0 24.845143534448013 61.63856802638669 24.845143534448013 42.526975159433526 0 2.4247425010840047 2 0.4247425010840047 0 + + {[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]{I|L}[R{M(Oxidation (M))|F}]D{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]D{M(Oxidation (M))|F}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[R{M(Oxidation (M))|F}]D{M(Oxidation (M))|F}E{I|L};{[QG]|[NA]}[WP][EP]{I|L}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DE{I|L};{[QN]|[E{I|L}]|[KN]}[EP][EP]{I|L}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QN]|[E{I|L}]|[KN]}[WP][WK]DE{I|L} 6.6975;3.1962;3.0934;2.8034;2.6682;2.3917;2.2889;1.9989;0.82041;0.8103 +;-;-;-;-;-;-;-;-;- + 593 NaN NaN 253720.6 NaN 15636 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19355 79.647 NaN 1641600 35 0 274980 0.261 + 32268 VYTVVDEMFL 10 81 616.299301352522 1230.5840497718439 2 616.2996215820312 MULTI HCD FTMS 0 0 0 19351 787097.9375 0.18022486321959477 -11 0.3047943115234375 4 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 214.13773924641143 6.677275740084004E-25 1 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 126.74 0 0 10.299 10.299 96.188 0 0 0 20.993624753846092 90.06212097123218 20.993624753846092 14.573259432077563 0 3.1861818737241734 1.5228787452803376 2.9291746928241125 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDV{I|L}SM{I|L};[YT]VVVDEYM{I|L};[YV]YEDVVV{M(Oxidation (M))|F}V;[YV]TV[MT]EE{M(Oxidation (M))|F}{I|L};[YV]YEDV{I|L}[MT]V;[YT]VV[MT]EE{M(Oxidation (M))|F}{I|L} 10.299;9.1147;8.4912;8.2212;7.8403;7.6915;6.9364;6.2077;6.1596;4.13 +;-;-;-;-;-;-;-;-;- + 2166 NaN NaN 344567.4 NaN 15637 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19356 79.65 NaN 1084000 35 0 150570 0.261 + 7815 FYPYGLQTF 9 98 568.2756573282156 1134.5367617232312 2 569.7598876953125 MULTI HCD FTMS 0 0 0 19351 37638.75 0.45737669153788185 6 -0.16402435302734375 5 Unmodified _FYPYGLQTF_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant 18.13498045792455 0.20367413111508956 1 AA{I|L}Y 4 8 18.443 0 0 1.6256 0 0 128.12578848557524 585.1677950494749 713.2935835350502 0 0 0 0 0 0 0 0 0 AA{I|L}Y 1.6256 - 360 + NaN NaN 247906.1 NaN 15638 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19357 79.654 NaN 532060 35 0 32273 0.262 + 15919 LPLYIKPM 8 84 487.79078151675463 973.5670101003093 2 487.790771484375 MULTI HCD FTMS 0 0 0 19351 367371.8125 0.5918938239200285 32 -0.9250869750976562 6 Unmodified _LPLYIKPM_ REV__ENST00000428888.1_1_2:166702523-166702559:-|nuORF 10.183394434864962 0.5188676124868831 1 [KT]AQS 5 -1 9.8329 0 0 1.01 0 0 0 455.2679123571809 455.2679123571809 1.2493873660829973 0 0 0 0 0 0 0 0 [KT]AQS 1.01 - 54 + NaN NaN 174904.3 NaN 15639 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19358 79.657 NaN 728600 35 0 102160 0.261 + 18099 MNYIQIPEF 9 91 577.7810217624589 1153.5474905917176 2 577.7828369140625 MULTI HCD FTMS 0 0 0 19351 83955.984375 0.25755986517034896 -8 0.22612762451171875 7 Unmodified _MNYIQIPEF_ ENST00000381061.8_1_22:46239551-46239644:+|nuORF 9.38312468134398 0.279288223203164 1 [Y{I|L}]N{M(Oxidation (M))|F}E{I|L}P{I|L} 8 7 38.805 0 0 3.3639 0 0 0 161.05863496111138 161.05863496111138 20.569378819011668 0 0 0 0 0 2 0.3054621874040891 0.3054621874040891 [Y{I|L}]N{M(Oxidation (M))|F}E{I|L}P{I|L} 3.3639 - 608 NaN NaN 200971 NaN 15640 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19359 79.66 NaN 440250 35 0 92513 0.261 + 26057 SPEYFEPIL 9 57 547.7737199874349 1093.5328870416697 2 547.7745361328125 MULTI HCD FTMS 0 0 0 19351 85057.359375 0.07307945414242173 -5 0.1309051513671875 8 Unmodified _SPEYFEPIL_ ENSG00000104756|ENST00000221200|KCTD9;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF 46.020951573049366 0.037705236580089195 1 DVEP{I|L}{I|L} 6 5 55.196 0 0 5.0475 0 0 409.1676197736344 0 409.1676197736344 0 40.59176592564398 0 0 0 1.3807196863200843 0 0.3252574989159953 0 DVEP{I|L}{I|L} 5.0475 - 119 NaN NaN 157343.4 NaN 15641 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19360 79.664 NaN 253740 35 0 21998 0.261 + 31857 VYMSCFPFFI 10 70 627.2901184239616 1252.5656839147232 2 627.2892456054688 MULTI HCD FTMS 0 0 0 19351 62562.43359375 0.11775025690992413 -12 0.3410491943359375 9 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 34.10243960390752 0.1965851268881605 1 [YV]TVVDE 7 -1 67.083 0 0 5.3556 0 0 0 444.15818201236567 444.15818201236567 51.50978212854113 0 0 0 0 1.5044321917401078 2 0.3807196863200844 0 [YV]TVVDE 5.3556 - 183 + NaN NaN 126083 NaN 15642 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19361 79.667 NaN 211390 35 0 90137 0.263 + 14883 LKMFLNLL 8 42 496.3038712465691 990.5931895599382 2 496.3039245605469 MULTI HCD FTMS 0 0 0 19351 73061.34375 0.23272460320225363 31 -0.892242431640625 10 Unmodified _LKMFLNLL_ ENSG00000100226|ENST00000216044|GTPBP1 2.302733041254933 0.5385759549224092 1 {I|L} 1 7 5.4846 0 0 0.55366 0 0 128.2049882063033 746.2799776666624 874.4849658729656 0 0 0 0 0 0 0 0 0 + {I|L} 0.55366 + + 11 + NaN NaN 112780.6 NaN 15643 3716 19351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19363 79.672 NaN 924830 35 0 111060 0.327 + 13439 KYPENFFLL 9 85 585.8132425088911 1169.6119320845821 2 585.8138427734375 MULTI HCD FTMS 0 0 0 19362 545355.5625 0.002750725629833329 150 -4.308372497558594 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 79.59630418116434 0.005983006570063981 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 83.052 0 0 7.1008 7.1008 88.912 0 0 0 4.963352341680476 56.50061693669255 4.963352341680476 8.578409410397484 0 2.0356668758921828 0 0.3252574989159953 1.2231975075880328 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 7.1008;6.3674;6.3135;5.7807;5.5801;5.5801;5.3904;5.0472;4.9934;4.4131 +;-;-;-;-;-;-;-;-;- + 1376 NaN NaN 221551.6 NaN 15644 3717 19362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19364 79.676 NaN 1050200 35 0 114400 0.261 + 22514 QRSPGWFLL 9 104 552.3046262234334 1102.5946995136667 2 552.7902221679688 MULTI HCD FTMS 0 0 0 19362 19010.6796875 0.42688368665217796 4 -0.11159515380859375 2 Unmodified _QRSPGWFLL_ REV__ENST00000536708.6_1_17:46058929-46059097:+|nuORF 15.847184025352803 0.2234401846867398 1 D{I|L}V{M(Oxidation (M))|F}A{I|L}D{M(Oxidation (M))|F} 8 -1 44.295 0 0 4.0173 0 0 164.1078716482147 0 164.1078716482147 0 24.905082891126963 0 0 0 0 0 0.7742275032520141 0 D{I|L}V{M(Oxidation (M))|F}A{I|L}D{M(Oxidation (M))|F} 4.0173 - 2097 + NaN NaN 237531.6 NaN 15645 3717 19362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19365 79.68 NaN 413590 35 0 76948 0.261 + 15818 LPIDGANDLF 10 51 537.777016218253 1073.539479503306 2 537.7771606445312 MULTI HCD FTMS 0 0 0 19362 161022.5625 0.16642260146674248 7 -0.1836700439453125 3 Unmodified _LPIDGANDLF_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF;nc|ENSG00000198408|O60502-4|OGA 34.93206674587334 0.18938571726943593 1 ND{I|L}{M(Oxidation (M))|F} 4 6 50.79 0 0 4.7311 0 0 566.3075708311167 0 566.3075708311167 0 29.820618910682484 0 0 0 1.2302046884880937 0 0.3807196863200844 0.4247425010840047 + ND{I|L}{M(Oxidation (M))|F} 4.7311 + + 42 NaN NaN 147495 NaN 15646 3717 19362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19366 79.683 NaN 281370 35 0 41849 0.261 + 30242 VIYKLVPLI 9 55 529.3546809375133 1056.6948089418265 2 529.3548583984375 MULTI HCD FTMS 0 0 0 19362 91844.6328125 0.5921496002524923 1 -0.0228729248046875 4 Unmodified _VIYKLVPLI_ tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1 16.942295170755138 0.21397866736869717 1 VP{I|L}{I|L} 4 5 29.38 0 0 2.7804 0 0 616.3948566253629 0 616.3948566253629 0 15.78672801439147 0 0 0 1.3182503180159344 0 0 0 + VP{I|L}{I|L} 2.7804 + + 72 NaN NaN 119496.9 NaN 15647 3717 19362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19367 79.686 NaN 237080 35 0 65072 0.261 + 20074 NYIPRFWTF 9 39 622.3163957915608 1242.6182386499215 2 622.31689453125 MULTI HCD FTMS 0 0 0 19362 99243.046875 0.007225614327638786 69 -1.976593017578125 5 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 38.175570920033316 0.07371992880350783 1 [YN]{I|L} 3 6 41.254 0 0 3.32 0 0 0 849.4052260195343 849.4052260195343 16.03794667124717 0 0 0 0 1 1.6989700043360187 0 0.3807196863200844 + [YN]{I|L} 3.32 + + 19 NaN NaN 119934.6 NaN 15648 3717 19362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19368 79.69 NaN 537170 35 0 42145 0.261 + 10910 IWSDAAALEL 10 79 544.7837313226499 1087.5529097120998 2 544.7940673828125 MULTI HCD FTMS 0 0 0 19362 35948.9609375 0.48595340115432056 -2 0.06238555908203125 6 Unmodified _IWSDAAALEL_ ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant 31.26834338654808 0.2211790902911672 1 WYA{I|L}E{I|L} 6 5 45.966 0 0 4.2265 0 0 294.13667494941564 0 294.13667494941564 0 26.98892707138974 0 0 0 1.586696871556164 0 0 0 WYA{I|L}E{I|L} 4.2265 - 722 NaN NaN 157568.4 NaN 15649 3717 19362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19370 79.695 NaN 2086800 35 0 806080 0.327 + 17301 LYPQFMFHL 9 77 598.3019807680839 1194.5894086029678 2 598.3023071289062 MULTI HCD FTMS 0 0 0 19369 1099614.625 0.4015652015294771 5 -0.1378936767578125 1 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 81.61307344734483 0.005330412723537057 1 {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 94.051 0 0 7.8731 7.8731 92.973 0 0 0 80.60788741577753 7.3708934260475445 7.3708934260475445 12.703037561203843 0 2.548455006504028 2 0 0.3494850021680094 + + {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YA[PG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{I|L}Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{I|L}YM{M(Oxidation (M))|F}H{I|L};{I|L}YPQ{[QV]|[N{I|L}]|[RA]|[KV]}{[ES]|[DT]|[{I|L}C]}[MT];[Y{I|L}]PQ{M(Oxidation (M))|F}M[H{I|L}]{M(Oxidation (M))|F};{I|L}[QP]Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]{M(Oxidation (M))|F}YM{M(Oxidation (M))|F}H{I|L} 7.8731;6.8097;6.7051;6.1429;5.0099;4.4024;4.3152;4.2546;3.9811;3.2262 +;-;-;+;-;-;-;-;-;- + 514 + NaN NaN 397151 NaN 15650 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19371 79.699 NaN 560550 35 0 28766 0.263 + 19294 NLVKGPRSS 9 74 479.2774935703601 956.5404342075202 2 479.2774658203125 MULTI HCD FTMS 0 0 0 19369 535075.75 0.5012106974132291 34 -0.9642715454101562 2 Unmodified _NLVKGPRSS_ ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 6.2057823575117 0.30397260197431997 1 Q 1 9 12.474 0 0 1.3041 0 0 458.27336121670527 367.1970308893188 825.4703921060241 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.3041 - 19 + NaN NaN 176015.5 NaN 15651 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19372 79.703 NaN 172350 35 0 13861 0.261 + 3589 EKIQKNKN 8 68 501.29058431079056 1000.5666156883811 2 501.2905578613281 MULTI HCD FTMS 0 0 0 19369 130259.109375 0.2289863918641243 31 -0.8889236450195312 3 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 4.3292370932331545 0.5355693454741696 1 V 1 8 0.9691 0 0 0.096855 0 0 674.3732695963874 224.09821497135002 898.4714845677374 0 0 0 0 0 0 0 0 0 V 0.096855 - 4 + NaN NaN 99404.2 NaN 15652 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19373 79.706 NaN 360590 35 0 29312 0.261 -1 YCSAFEEAAL 10 77 580.7506476435962 1159.4867423539922 2 580.7513427734375 MULTI HCD FTMS 0 0 0 19369 110810.03125 0.7002425922665705 -3 0.08525848388671875 4 Carbamidomethyl (C) _YC(Carbamidomethyl (C))SAFEEAAL_ ENSG00000139636|ENST00000267102|LMBR1L;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;ENST00000552141.5_1_12:49495806-49497560:-|nuORF;ENST00000552879.5_1_12:49494935-49496886:-|nuORF;nc|ENSG00000139636|Q6UX01-2|LMBR1L;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-5|LMBR1L 9.38312468134398 0.42334543440173333 1 YY{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{I|L} 6 -1 46.094 0 0 3.9754 0 0 0 292.1273287408813 292.1273287408813 26.273043837969325 0 0 0 0 1.4489700043360187 2 0 0 YY{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{I|L} 3.9754 - 155 + NaN NaN 144795.2 NaN 15653 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19374 79.709 NaN 448220 35 0 39451 0.261 -1 PTCCSRKME 9 88 592.7451278395515 1183.475702745903 2 592.7451782226562 MULTI HCD FTMS 0 0 0 19369 94011.0234375 0.3810746362053825 -8 0.22954559326171875 5 2 Carbamidomethyl (C),Oxidation (M) _PTC(Carbamidomethyl (C))C(Carbamidomethyl (C))SRKM(Oxidation (M))E_ ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-3|GPC3 3.944395688203298 0.32111559684428237 1 VY[YK]W[{M(Oxidation (M))|F}E] 7 -1 20.832 0 0 1.7603 0 0 150.02395546111921 0 150.02395546111921 0 15.146001036056445 0 0 0 0.2614393726401688 0 0.8252574989159953 0 VY[YK]W[{M(Oxidation (M))|F}E] 1.7603 - 226 + NaN NaN 154484.9 NaN 15654 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19375 79.713 NaN 235910 35 0 30851 0.261 + 27985 TFISYSVTF 9 68 532.7681653874005 1063.5217778416009 2 532.7682495117188 MULTI HCD FTMS 0 0 0 19369 87671.3203125 0.5901726636729756 5 -0.1378936767578125 6 Unmodified _TFISYSVTF_ ENSG00000042286|ENST00000307864|AIFM2;nc|ENSG00000042286|Q9BRQ8-2|AIFM2 99.79894945604345 0.0042691968066200965 1 [{M(Oxidation (M))|F}T]{I|L}SYSVT{M(Oxidation (M))|F} 9 0 + 84.729 0 0 7.9668 7.9668 88.349 0 0 0 3.979400086720375 4.7172622283295595 3.979400086720375 3.979400086720375 0 2.1989700043360187 0 1.5114393726401687 0 + + [{M(Oxidation (M))|F}T]{I|L}SYSVT{M(Oxidation (M))|F};[YV]VSYSVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}SYSAY{I|L};[YV]VSYSAY{I|L};[{M(Oxidation (M))|F}T][HK]{[{M(Oxidation (M))|F}H]|[RQ]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][HK][{M(Oxidation (M))|F}T]H{M(Oxidation (M))|F} 7.9668;7.5926;4.8305;4.4564;1.8549;0.74375 +;-;-;-;-;- + 944 NaN NaN 114743.7 NaN 15655 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19376 79.716 NaN 336300 35 0 28620 0.261 + 16863 LYETPAPACI 10 63 539.2679517160655 1076.5213504989308 2 539.2686157226562 MULTI HCD FTMS 0 0 0 19369 100138.2265625 0.005356978058923951 142 -4.0718994140625 7 Unmodified _LYETPAPACI_ REV__ENST00000497036.5_1_22:50688078-50688743:-|nuORF 10.823927491677226 0.4098686510432541 1 [Y{I|L}]T{I|L} 4 -1 27.981 0 0 2.5992 0 0 0 583.2199643507464 583.2199643507464 2.7640990595323878 0 0 0 0 0 2 0 0 [Y{I|L}]T{I|L} 2.5992 - 61 NaN NaN 133090.1 NaN 15656 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19377 79.719 NaN 96751 35 0 6003.3 0.262 + 31070 VTAVRRDP 8 52 457.2640517346291 912.5135505360582 2 457.264404296875 MULTI HCD FTMS 0 0 0 19369 79758.3359375 0.7948279145406386 -6 0.1737518310546875 8 Unmodified _VTAVRRDP_ ENST00000495759.5_1_9:111631304-111631394:-|nuORF 4.3292370932331545 0.5355693454741696 1 W 1 8 11.99 0 0 1.3139 0 0 708.4239947272677 0 708.4239947272677 0 4.68765315847925 0 0 0 0 0 0 0 W 1.3139 - 17 + NaN NaN 99900.1 NaN 15657 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19378 79.723 NaN 391620 35 0 74774 0.261 + 26993 SYLPISPTF 9 51 512.7711471087971 1023.5277412843942 2 512.7714233398438 MULTI HCD FTMS 0 0 0 19369 94461.8984375 0.529314515126395 -1 0.0228729248046875 9 Unmodified _SYLPISPTF_ ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2 56.17704186161178 0.022929533404884107 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}S[TP]{M(Oxidation (M))|F} 9 0 + 50.908 0 0 4.9738 4.9738 82.424 0 0 0 4.093020841151613 29.93887181533495 4.093020841151613 2.2897845729981725 0 1.3807196863200843 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}S[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}S{I|L}P[TP]{M(Oxidation (M))|F} 4.9738;4.7501 +;- + 161 NaN NaN 143510.4 NaN 15658 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19379 79.726 NaN 118680 35 0 26566 0.261 + 23663 RQAEELLEWE 10 64 434.8822968659712 NaN 0 434.88226318359375 PEAK HCD FTMS 0 0 0 19369 70291.84375 0.66759950304129 3 -0.08872222900390625 10 Unmodified _RQAEELLEWE_ REV__ENSG00000131845|ENST00000282286|ZNF304 3.5870582119611467 0.3371142643538189 1 P 1 -1 0.71334 0 0 0.082205 0 0 362.79735632784246 404.86570154361567 767.6630578714581 0 0 0 0 0 0 0 0 0 P 0.082205 - 1 + NaN NaN 107277 NaN 15659 3718 19369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19381 79.731 NaN 1594700 35 0 98815 0.327 + 22732 QYEIWRELF 9 111 642.3244181473788 1282.6342833615574 2 642.3247680664062 MULTI HCD FTMS 0 0 0 19380 808729.3125 0.9898640378550827 1 -0.01971435546875 1 Unmodified _QYEIWRELF_ ENSG00000168092|ENST00000527958|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-2|PAFAH1B2;nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-4|PAFAH1B2 181.69086120494794 9.610660986922852E-13 1 [YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F} 9 0 + 101.78 0 0 7.9355 7.9355 93.321 0 0 0 31.412414484000095 60.18664714995552 31.412414484000095 13.591444694250669 0 2.305462187404089 1.0457574905606752 2.2689301784845295 2.8169015600442577 + + [YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F};[YQ]EW{I|L}RE{I|L}{M(Oxidation (M))|F};[YQ]E{I|L}WR{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}TP[{M(Oxidation (M))|F}T]RE{I|L}{M(Oxidation (M))|F};[YQ]E{I|L}W[VG]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{I|L}{[DA]|[EG]}R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YQ]WRE{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E[RV]{[MS]|[{M(Oxidation (M))|F}A]}E{I|L}{M(Oxidation (M))|F};[YQ]EW{I|L}R{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}TP{[ET]|[MV]}R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.9355;6.8758;5.1713;5.1096;4.4534;4.238;4.2328;4.1227;4.1117;3.9277 +;-;-;-;-;-;-;-;-;- + 7375 NaN NaN 344081.4 NaN 15660 3719 19380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19382 79.735 NaN 250330 35 0 18932 0.262 + 11387 IYPDSFTVL 9 61 527.7764795365985 1053.5384061399968 2 527.7762451171875 MULTI HCD FTMS 0 0 0 19380 66551.3359375 0.2074290717073049 10 -0.274505615234375 2 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 54.773552608820026 0.024892918755467567 1 N{M(Oxidation (M))|F}TV{I|L} 5 5 42.339 0 0 4.0188 0 0 461.2191781308946 0 461.2191781308946 0 30.656753288559813 0 0 0 1.066901560044258 0 0.4247425010840047 0 N{M(Oxidation (M))|F}TV{I|L} 4.0188 - 186 NaN NaN 121065 NaN 15661 3719 19380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19383 79.739 NaN 255090 35 0 76063 0.262 + 8734 HHGAGAFF 8 32 422.19864156822445 842.3827302032489 2 422.1988220214844 MULTI HCD FTMS 0 0 0 19380 105727.6953125 0.11399974479426118 35 -0.9837799072265625 3 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.304084428638 0 677.304084428638 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 1 + NaN NaN 116884.5 NaN 15662 3719 19380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19384 79.742 NaN 593040 35 0 164630 0.261 -1 0 51 633.3935451532051 632.386268686605 1 633.4072875976562 MULTI HCD FTMS 0 0 0 19380 65430.9375 0.671680609821411 -2 0.059051513671875 4 NaN NaN 1 D 1 -1 11.237 0 0 1.7769 0 0 54.02360037342664 460.30701408774894 514.3306144611756 0 0 0 0 0 0 0 0.4247425010840047 0 D 1.7769 - 10 + NaN NaN 171458.9 NaN 15663 3719 19380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19385 79.746 NaN 194870 35 0 11143 0.262 -1 0 78 523.3035352520095 1044.592517570819 2 523.3042602539062 MULTI HCD FTMS 0 0 0 19380 90819.3125 0.57441438734881 -6 0.1771392822265625 5 NaN NaN 1 {I|L}SW 3 -1 10.177 0 0 0.97428 0 0 249.17608798273142 406.21055017642817 655.3866381591596 0 0 0 0 0 0 0 0 0 {I|L}SW 0.97428 - 160 + NaN NaN 115883.9 NaN 15664 3719 19380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19387 79.751 NaN 1744500 35 0 341840 0.327 + 4542 EYLIVFPKL 9 77 561.3338653005517 1120.6531776679033 2 561.3345947265625 MULTI HCD FTMS 0 0 0 19386 729161.0625 0.09402698952107894 10 -0.2909088134765625 1 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 126.56589448801843 0.0008132384440316759 1 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 99.77 0 0 8.9028 8.9028 98.432 0 0 0 21.771081482726373 14.09256854528806 14.09256854528806 99.76965961818699 0 2.8494850021680094 1.5228787452803376 2.778659694992122 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 8.9028 + + 668 NaN NaN 347341.2 NaN 15665 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19388 79.755 NaN 1378000 35 0 113680 0.261 -1 PFKCVLDEF 9 103 577.7810217624589 1153.5474905917176 2 578.2822265625 MULTI HCD FTMS 0 0 0 19386 440025.53125 0.804502633679097 -1 0.01971435546875 2 Carbamidomethyl (C) _PFKC(Carbamidomethyl (C))VLDEF_ ENST00000480753.1_1_2:182757749-182757926:+|nuORF 34.10243960390752 0.09241788333544565 1 [Y{I|L}]{I|L}EN{I|L}DEC 9 -1 64.293 0 0 5.5735 0 0 0 58.038298081647014 58.038298081647014 6.622950587108818 0 0 0 0 0.5 1.6989700043360187 0.5866968715561641 0.805462187404089 [Y{I|L}]{I|L}EN{I|L}DEC 5.5735 - 1172 NaN NaN 298473.1 NaN 15666 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19389 79.759 NaN 508390 35 0 43404 0.261 + -1 MWCIVFVM 8 70 551.2492330884755 NaN 0 551.2670288085938 PEAK HCD FTMS 0 0 0 19386 5664.88134765625 0.4425406292750493 1 -0.03282928466796875 3 Carbamidomethyl (C),Oxidation (M) _MWC(Carbamidomethyl (C))IVFVM(Oxidation (M))_ REV__ENSG00000139874|ENST00000267377|SSTR1;REV__SSTR1|p.V276M|1|0.22|ENSG00000139874|chr14:38210215-38210215|G/A|missense_variant 17.086550045450526 0.386433553673079 1 VD{[QD]|[EN]|[WG]|[KD]|[RS]}VDV 7 -1 29.882 0 0 2.7153 0 0 165.04146631850216 162.05608545474846 327.09755177325064 0 0 0 0 0 0.4247425010840047 0 0.2614393726401688 0.3054621874040891 VD{[QD]|[EN]|[WG]|[KD]|[RS]}VDV 2.7153 - 627 + NaN NaN 160979.5 NaN 15667 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19390 79.762 NaN 356600 35 0 51679 0.261 + 15565 LPDQTLPIL 9 73 505.29993776610104 1008.5853225990021 2 505.30010986328125 MULTI HCD FTMS 0 0 0 19386 120332.703125 0.622224637089835 2 -0.04904937744140625 4 Unmodified _LPDQTLPIL_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 25.399314129420986 0.14091189997036632 1 {I|L}P{I|L}{I|L} 4 5 26.682 0 0 2.6455 0 0 554.2700672834 0 554.2700672834 0 11.197887582883936 0 0 0 1.0484550065040281 0 0 0 + {I|L}P{I|L}{I|L} 2.6455 + + 33 NaN NaN 142873.6 NaN 15668 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19391 79.765 NaN 419930 35 0 73126 0.261 + 34696 YPVEDYLDL 9 71 563.7693464983057 1125.5241400634113 2 563.769775390625 MULTI HCD FTMS 0 0 0 19386 129686.46875 0.3938769023337914 -5 0.14115142822265625 5 Unmodified _YPVEDYLDL_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 25.399314129420986 0.14091189997036632 1 Y{I|L}D{I|L} 4 5 37.251 0 0 3.3096 0 0 603.253709861525 0 603.253709861525 0 13.949791016870066 0 0 0 0.8807196863200843 0 0 0 + Y{I|L}D{I|L} 3.3096 + + 183 NaN NaN 136917.2 NaN 15669 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19392 79.769 NaN 681050 35 0 194180 0.261 + 2438 DPTSSSPCPLL 11 84 558.7650671217652 1115.5155813103304 2 558.7651977539062 MULTI HCD FTMS 0 0 0 19386 147822.828125 0.7970799088393019 -1 0.01971435546875 6 Unmodified _DPTSSSPCPLL_ REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF 41.8396318013385 0.12510225336016262 1 SPEY{M(Oxidation (M))|F}EVV{M(Oxidation (M))|F} 9 -1 + 55.404 0 0 4.9667 4.9667 88.259 0 0 0 11.916309546812371 5.942124970647029 5.942124970647029 13.809647398868847 0 1.8851518780601921 0 0 0 SPEY{M(Oxidation (M))|F}EVV{M(Oxidation (M))|F};[PS]EYEEH{I|L}{I|L};SPE{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AEP{I|L}{I|L};SPE{[ES]|[DT]|[{I|L}C]}[MN]P{I|L}{I|L};[{I|L}P]CY{M(Oxidation (M))|F}[KS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}[TP]{M(Oxidation (M))|F}EVV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[CP]|[EA]}EEH{I|L}{I|L};[Y{I|L}]{[CP]|[EA]}{M(Oxidation (M))|F}[KS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]RR{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]RR[EC][YN] 4.9667;3.7287;2.5723;2.5443;1.6631;1.542;1.3766;0.95008;0.68616;0.43283 -;-;-;-;-;-;-;-;-;- 318 + NaN NaN 183757 NaN 15670 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19393 79.772 NaN 450580 35 0 41442 0.261 + 1876 CWEDERYF 8 80 574.2292665937354 1146.4439802542706 2 574.2293701171875 MULTI HCD FTMS 0 0 0 19386 113102.40625 0.5969896638301518 -1 0.01971435546875 7 Unmodified _CWEDERYF_ REV__ENSG00000205978|ENST00000382554|NYNRIN;REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant 5.230669730166228 0.5342319408533849 1 QSYT{M(Oxidation (M))|F} 5 -1 27.959 0 0 2.4387 0 0 502.16433045133937 0 502.16433045133937 0 9.303468749420311 0 0 0 0 0 0 0 QSYT{M(Oxidation (M))|F} 2.4387 - 960 + NaN NaN 153258.6 NaN 15671 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19394 79.775 NaN 220320 35 0 29248 0.261 + 21136 PPLDEFSPSFI 11 57 624.812374308596 1247.6101956839918 2 624.8128662109375 MULTI HCD FTMS 0 0 0 19386 39026.57421875 0.3251482934568889 -15 0.419769287109375 8 Unmodified _PPLDEFSPSFI_ REV__ENST00000287169.7_1_11:57440150-57440300:+|nuORF 4.715918219556657 0.3982382512160552 1 {M(Oxidation (M))|F}[PS]VDE{M(Oxidation (M))|F} 7 -1 26.66 0 0 2.1369 0 0 148.12068670564742 275.1400240533813 423.2607107590287 0 0 0 0 0 0 0 0.6694451763165201 0 {M(Oxidation (M))|F}[PS]VDE{M(Oxidation (M))|F} 2.1369 - 199 + NaN NaN 110998.4 NaN 15672 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19395 79.779 NaN 179350 35 0 20181 0.261 -1 LYMPKLLYF 9 54 602.3269992219134 NaN 0 602.3139038085938 PEAK HCD FTMS 0 0 0 19386 8796.94921875 0.4484088737615224 -5 0.14115142822265625 9 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 10.823927491677226 0.2427956001690155 1 T 1 -1 6.9897 0 0 0.5812 0 0 165.106199055314 933.4620189257209 1098.5682179810349 0 0 0 0 0 0 0 0 0 T 0.5812 - 51 + NaN NaN 118036.9 NaN 15673 3720 19386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19397 79.783 NaN 6263600 35 0 587590 0.327 + 17258 LYPLTNYTF 9 119 566.289701364897 1130.564849796594 2 566.2908325195312 MULTI HCD FTMS 0 0 0 19396 4236308.5 0.802945834671163 -3 0.08872222900390625 1 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 223.05949007766432 5.22265287935879E-24 1 Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F} 9 2 + 126.06 0 0 11.15 11.15 95.275 0 0 0 10.086054021805381 10.086054021805381 10.086054021805381 10.086054021805381 0 3.3807196863200843 1.5228787452803376 1.979339555460717 0.6694451763165201 Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};Y{I|L}P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{[QS]|[NT]}{I|L}YT{M(Oxidation (M))|F} 11.15;10.258;9.7432;9.0832;8.9181;8.7973;7.7436;7.7279;7.6228;6.8262 -;+;-;-;-;-;-;-;-;- + 7529 + NaN NaN 1050751.6 NaN 15674 3721 19396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19398 79.788 NaN 839370 35 0 96139 0.261 + 21488 PYFNAPVYL 9 79 542.2793463216783 1082.5441397101565 2 542.2796020507812 MULTI HCD FTMS 0 0 0 19396 254658.578125 0.18443882223139013 8 -0.22196197509765625 2 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 60.38955033654506 0.017036522530421875 1 [Y{I|L}]MNA[VP]Y 8 3 47.489 0 0 4.3868 0 0 0 128.0739209338291 128.0739209338291 21.29116356790732 0 0 0 0 1.6549471895720984 1.3979400086720375 0 1.079689690656103 [Y{I|L}]MNA[VP]Y 4.3868 - 431 NaN NaN 209201.3 NaN 15675 3721 19396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19399 79.791 NaN 250160 35 0 60178 0.261 -1 ILCYTWEMY 9 61 619.2668664706667 1236.5191800081334 2 619.2670288085938 MULTI HCD FTMS 0 0 0 19396 145021.8125 0.7078453773514397 2 -0.04917144775390625 3 Oxidation (M) _ILCYTWEM(Oxidation (M))Y_ ENSG00000152034|ENST00000281806|MCHR2 8.593279151180031 0.2858735984551981 1 YS{M(Oxidation (M))|F} 3 -1 28.672 0 0 2.3188 0 0 821.3436146466812 0 821.3436146466812 0 1.7094128073577508 0 0 0 0.8494850021680094 0 0 0 YS{M(Oxidation (M))|F} 2.3188 - 77 NaN NaN 123569.5 NaN 15676 3721 19396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19400 79.795 NaN 92509 35 0 4354.5 0.262 + 10316 ILPCIVLTF 9 66 509.8037789060589 1017.5930048789178 2 509.8037414550781 MULTI HCD FTMS 0 0 0 19396 84794.4453125 0.2353950473232643 36 -1.0164947509765625 4 Unmodified _ILPCIVLTF_ REV__ENSG00000004700|ENST00000444129|RECQL;REV__RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3738 0 0 852.5139471170022 0 852.5139471170022 0 10.880456295278407 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3738 + + 14 + NaN NaN 95716.4 NaN 15677 3721 19396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19402 79.8 NaN 4746600 35 0 827140 0.327 + 32269 VYTVVDEMFL 10 86 616.299301352522 1230.5840497718439 2 616.2996826171875 MULTI HCD FTMS 0 0 0 19401 3293113 0.754036838003618 -5 0.12781524658203125 1 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 1 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 126.74 0 0 10.299 10.299 96.14 0 0 0 20.993624753846092 75.86819398339564 20.993624753846092 14.330984399557423 0 3.1861818737241734 1.5228787452803376 2.9291746928241125 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]VTVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVVTM{I|L};[YV]TVDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]VTVDEYM{I|L};[YV]TVDVEYM{I|L} 10.299;9.1344;8.8136;8.8042;8.7348;8.3643;7.8543;7.7008;7.649;7.5703 +;-;-;-;-;-;-;-;-;- + 3672 NaN NaN 612955.6 NaN 15678 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19403 79.804 NaN 1516700 35 0 360640 0.261 + 26058 SPEYFEPIL 9 65 547.7737199874349 1093.5328870416697 2 547.7740478515625 MULTI HCD FTMS 0 0 0 19401 1110794.125 0.9543704262169727 1 -0.03295135498046875 2 Unmodified _SPEYFEPIL_ ENSG00000104756|ENST00000221200|KCTD9;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF 68.08070601005525 0.009709267492204555 1 Y{M(Oxidation (M))|F}EP{I|L}{I|L} 6 3 68.677 0 0 6.2803 0 0 313.12678725410314 0 313.12678725410314 0 55.57827834592722 0 0 0 2.1861818737241734 0 0.805462187404089 0 + Y{M(Oxidation (M))|F}EP{I|L}{I|L} 6.2803 + + 169 NaN NaN 314398.7 NaN 15679 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19404 79.808 NaN 1451800 35 0 166960 0.261 + 35763 YYMDYLAAL 9 107 569.75958373651 1137.5046145398198 2 569.759765625 MULTI HCD FTMS 0 0 0 19401 653542.375 0.8312214052661012 3 -0.08539581298828125 3 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 60.38955033654506 0.017036522530421875 1 {I|L}AA{I|L} 4 5 46.938 0 0 4.1264 0 0 751.2533545470412 0 751.2533545470412 0 29.225490200071285 0 0 0 1.5 0 0 0 + {I|L}AA{I|L} 4.1264 + + 644 NaN NaN 321244.2 NaN 15680 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19405 79.811 NaN 1202000 35 0 106340 0.261 + 13440 KYPENFFLL 9 111 585.8132425088911 1169.6119320845821 2 585.814208984375 MULTI HCD FTMS 0 0 0 19401 552006.4375 0.0027842720600548374 155 -4.4588165283203125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 62.647 0 0 5.3562 5.3562 86.865 0 0 0 5.944825567400315 23.957713472593397 5.944825567400315 9.208187539523749 0 2.079689690656103 0 0 0.899649864804614 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]YYNPP{I|L}{I|L};[YK]YYGGPP{I|L}{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[NV]|[RG]}HH{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}D]|MM}P{I|L}{I|L};[{M(Oxidation (M))|F}V]{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}YK{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KS]EK{I|L} 5.3562;4.5689;4.3231;3.5358;2.9853;2.6097;2.5334;2.0351;1.5828;1.2325 +;-;-;-;-;-;-;-;-;- + 2275 NaN NaN 267424.4 NaN 15681 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19406 79.814 NaN 743610 35 0 63111 0.261 + 31858 VYMSCFPFFI 10 85 627.2901184239616 1252.5656839147232 2 627.2907104492188 MULTI HCD FTMS 0 0 0 19401 315354.21875 0.5935357392994781 -6 0.16402435302734375 5 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 48.345845343767074 0.08380532769255708 1 VYTVVDE 7 -1 83.018 0 0 6.6278 0 0 0 444.15586267642817 444.15586267642817 34.76383058217687 0 0 0 0 2.249134866972623 2 0.6861818737241735 0 VYTVVDE 6.6278 - 1755 + NaN NaN 202237.8 NaN 15682 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19407 79.818 NaN 422630 35 0 25902 0.263 -1 PLIIVCLF 8 93 487.79078151675463 973.5670101003093 2 487.79083251953125 MULTI HCD FTMS 0 0 0 19401 274922.25 0.44294302474063135 38 -1.0906829833984375 6 Carbamidomethyl (C) _PLIIVC(Carbamidomethyl (C))LF_ ENSG00000070214|ENST00000374720|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;nc|ENSG00000070214|Q8WWI5-3|SLC44A1 11.114462752807354 0.5120171699125776 1 [{I|L}P]Y 3 -1 15.686 0 0 1.6112 0 0 0 597.3450907877431 597.3450907877431 0.45757490560674974 0 0 0 0 0 1.3010299956639813 0 0 [{I|L}P]Y 1.6112 - 76 NaN NaN 150705.3 NaN 15683 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19408 79.821 NaN 269980 35 0 21167 0.261 + 2868 DYPRYLFEI 9 70 608.3057197721321 1214.596886611064 2 608.3062133789062 MULTI HCD FTMS 0 0 0 19401 108891.484375 0.1447383647805012 9 -0.2647705078125 7 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 45.69961567697781 0.039180348357221985 1 {M(Oxidation (M))|F}E{I|L} 3 6 34.129 0 0 2.8099 0 0 807.391758451065 0 807.391758451065 0 27.675814205128532 0 0 0 0.7887254899964358 0 0.3054621874040891 0 + {M(Oxidation (M))|F}E{I|L} 2.8099 + + 121 NaN NaN 118154.5 NaN 15684 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19409 79.824 NaN 175220 35 0 67185 0.262 + 23766 RRKKTTTT 8 42 496.3038712465691 990.5931895599382 2 496.3040771484375 MULTI HCD FTMS 0 0 0 19401 47558.29296875 0.15148893097286995 37 -1.0594024658203125 8 Unmodified _RRKKTTTT_ REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant 0 0.5419923896992614 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}N 4 -1 13.188 0 0 1.3313 0 0 0 516.3736381091154 516.3736381091154 12.808984056553534 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}N 1.3313 - 12 NaN NaN 104982.6 NaN 15685 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19410 79.828 NaN 311850 35 0 39811 0.261 -1 0 61 423.85066820753997 1268.53017522282 3 423.85107421875 MULTI HCD FTMS 0 0 0 19401 125127.875 0.6845052195742797 -5 0.12781524658203125 9 NaN NaN 1 VY 2 -1 44.776 0 0 3.5298 0 0 0 1003.375893169515 1003.375893169515 39.291746928241125 0 0 0 0 0.3807196863200844 2 0 0 VY 3.5298 - 10 + NaN NaN 133126 NaN 15686 3722 19401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19412 79.833 NaN 910330 35 0 59861 0.327 + 10292 IKYPENFFLL 10 109 642.3552030611716 1282.695853189143 2 642.3552856445312 MULTI HCD FTMS 0 0 0 19411 287421.8125 0.8871099211173681 -2 0.04917144775390625 1 Unmodified _IKYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 76.82478488871298 0.009498572185128612 1 [K{I|L}]YD[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 10 3 + 62.065 0 0 4.8386 4.8386 84.699 0 0 0 8.04953742795611 16.53212513775344 8.04953742795611 8.04953742795611 0 2.024227503252014 0 0 1.5501648626366045 [K{I|L}]YD[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{I|L}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}K{I|L}{I|L};[{M(Oxidation (M))|F}V]{[CA]|SS}W{I|L}[VG]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}K{I|L} 4.8386;4.2111;1.0754;0.51212;0.38117 -;-;-;-;- 2578 NaN NaN 228640.5 NaN 15687 3723 19411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19413 79.837 NaN 465460 35 0 50112 0.262 + 17860 MIEGLDVTII 10 84 552.3046262234334 1102.5946995136667 2 552.7900390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _MIEGLDVTII_ tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1 13.90604991867851 0.3810395177745597 1 {M(Oxidation (M))|F}D{I|L}VH{I|L}D{M(Oxidation (M))|F} 8 7 44.564 0 0 4.0417 0 0 98.09600411829224 0 98.09600411829224 0 28.980625354554377 0 0 0 0 0 1.0994850021680094 0 {M(Oxidation (M))|F}D{I|L}VH{I|L}D{M(Oxidation (M))|F} 4.0417 - 681 + NaN NaN 146407.4 NaN 15688 3723 19411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19414 79.841 NaN 449270 35 0 56724 0.261 + 33219 YFEELIQL 8 65 527.7764795365985 1053.5384061399968 2 528.2939453125 MULTI HCD FTMS 0 0 0 19411 7196.16796875 0.03661518068576493 12 -0.349822998046875 3 Unmodified _YFEELIQL_ REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;REV__DNAH10|p.M516Wfs*4|1|0.18|ENSG00000197653|chr12:123790030-123790030|C/-|frameshift_variant;REV__ENSG00000086717|ENST00000470157|PPEF1;REV__ENSG00000197653|ENST00000673944|DNAH10;REV__ENST00000467219.5_1_12:124265674-124298205:+|nuORF;REV__nc|ENSG00000086717|O14829-2|PPEF1;REV__nc|ENSG00000086717|O14829-3|PPEF1;REV__nc|ENSG00000086717|O14829-4|PPEF1;REV__nc|ENSG00000086717|O14829-5|PPEF1;REV__nc|ENSG00000197653|Q8IVF4-2|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 30.224811164608877 0.3565035853404968 1 TV{I|L} 3 -1 24.526 0 0 2.3279 0 0 722.3297831337128 0 722.3297831337128 0 4.855472428419336 0 0 0 0.3807196863200844 0 0.3807196863200844 0 TV{I|L} 2.3279 - 420 NaN NaN 147054.4 NaN 15689 3723 19411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19415 79.844 NaN 350270 35 0 69938 0.261 + 19919 NYFPFQWKL 9 68 621.8170285860915 1241.619504238983 2 622.3162841796875 MULTI HCD FTMS 0 0 0 19411 90198.984375 0.23899027294331213 -7 0.1969757080078125 4 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 30.636539890814138 0.10832830463492794 1 [YN]{I|L} 3 6 38.997 0 0 3.1408 0 0 0 848.4064491569483 848.4064491569483 16.28022170376731 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0.7302046884880937 [YN]{I|L} 3.1408 - 81 NaN NaN 142097.6 NaN 15690 3723 19411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19416 79.847 NaN 384610 35 0 57057 0.262 + 10581 IPLYIDDTL 9 80 531.7892875768034 1061.5640222204067 2 531.7894897460938 MULTI HCD FTMS 0 0 0 19411 130737.734375 0.3972273795098415 -2 0.04917144775390625 5 Unmodified _IPLYIDDTL_ ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2 74.42276476219924 0.007657080072768255 1 Y{I|L}DDT{I|L} 6 3 60.438 0 0 5.6933 0 0 323.22078139472814 0 323.22078139472814 0 45.834040958164124 0 0 0 1.805462187404089 0 0.4247425010840047 0 + Y{I|L}DDT{I|L} 5.6933 + + 134 NaN NaN 135869.6 NaN 15691 3723 19411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19417 79.851 NaN 171130 35 0 23578 0.261 -1 0 52 465.77734705933966 929.5401411854793 2 465.7776184082031 MULTI HCD FTMS 0 0 0 19411 41032.859375 0.6252835362706777 4 -0.11138153076171875 6 NaN NaN 1 V 1 -1 0.3786 0 0 0.04073 0 0 537.2494135016888 290.20014368228755 827.4495571839764 0 0 0 0 0 0 0 0 0 V 0.04073 - 2 + NaN NaN 109184.3 NaN 15692 3723 19411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19419 79.855 NaN 965060 35 0 300480 0.326 + 17302 LYPQFMFHL 9 82 598.3019807680839 1194.5894086029678 2 598.3021850585938 MULTI HCD FTMS 0 0 0 19418 497454.84375 0.18166414854866383 11 -0.3269195556640625 1 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 64.23631603340823 0.01165516075559909 1 {I|L}YA[PG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 10 2 + 69.747 0 0 5.8386 5.8386 84.477 0 0 0 23.111206103324733 6.647744131989128 6.647744131989128 3.521825181113627 0 2.416386562212267 2 0 0 {I|L}YA[PG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}Y[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YA{[RE]|[WV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]{M(Oxidation (M))|F}YM{M(Oxidation (M))|F}H{I|L};{I|L}[QP]Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YA{[RE]|[WV]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}][QP]{M(Oxidation (M))|F}M[H{I|L}]{M(Oxidation (M))|F};[QP]{I|L}Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 5.8386;5.5438;5.2833;5.2821;3.5472;3.514;3.444;3.4199;3.1193;3.087 -;+;-;+;-;-;-;-;-;- + 1285 + NaN NaN 240630.9 NaN 15693 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19420 79.86 NaN 468440 35 0 20713 0.262 + 19295 NLVKGPRSS 9 70 479.2774935703601 956.5404342075202 2 479.2774963378906 MULTI HCD FTMS 0 0 0 19418 416145.90625 0.38980794756111214 40 -1.15631103515625 2 Unmodified _NLVKGPRSS_ ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 6.2057823575117 0.30397260197431997 1 Q 1 9 14.732 0 0 1.5401 0 0 458.27272601947305 367.19727761831484 825.4700036377878 0 0 0 0 0 0.7742275032520141 0 0 0 Q 1.5401 - 47 + NaN NaN 158658.9 NaN 15694 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19421 79.864 NaN 1005100 35 0 96601 0.261 + 21489 PYFNAPVYL 9 82 542.2793463216783 1082.5441397101565 2 542.79150390625 MULTI HCD FTMS 0 0 0 19418 86997.6953125 0.08960672965654479 11 -0.3269195556640625 3 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 42.09456458481378 0.05572955244001856 1 Y[VP]A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{M(Oxidation (M))|F} 8 6 32.713 0 0 3.0219 0 0 131.09553881131234 0 131.09553881131234 0 -2.48606012441968 -2.48606012441968 0 0 0.9247425010840047 0 0.3252574989159953 1.0114393726401687 Y[VP]A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{M(Oxidation (M))|F} 3.0219 - 339 + NaN NaN 229990.3 NaN 15695 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19422 79.867 NaN 566500 35 0 61325 0.261 -1 EMPTCLLCVC 10 97 592.7451278395515 1183.475702745903 2 592.7442016601562 MULTI HCD FTMS 0 0 0 19418 167766.75 0.6800442212621174 -2 0.05585479736328125 4 Carbamidomethyl (C),Oxidation (M) _EM(Oxidation (M))PTCLLCVC(Carbamidomethyl (C))_ ENSG00000106809|ENST00000375561|OGN 10.073929032068715 0.4168838835836452 1 TY[YK]WE{M(Oxidation (M))|F} 7 -1 17.522 0 0 1.4806 0 0 148.03937569687793 0 148.03937569687793 0 -0.43682126525197873 -0.43682126525197873 0 0 0.3494850021680094 0 0.6747425010840047 0.805462187404089 TY[YK]WE{M(Oxidation (M))|F} 1.4806 - 322 + NaN NaN 168012.8 NaN 15696 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19423 79.87 NaN 354830 35 0 33145 0.261 + 2869 DYPRYLFEI 9 70 608.3057197721321 1214.596886611064 2 609.2880859375 MULTI HCD FTMS 0 0 0 19418 7934.9853515625 0.04018670443884114 11 -0.3269195556640625 5 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 17.11289562659939 0.2125047172822487 1 PWTQ{I|L}N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 8 8 36.081 0 0 2.9706 0 0 163.11186843623437 0 163.11186843623437 0 0.4250553466527762 0 0 0 0.3494850021680094 0 0 0.6747425010840047 PWTQ{I|L}N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 2.9706 - 1048 + NaN NaN 143482.3 NaN 15697 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19424 79.873 NaN 126840 35 0 18239 0.264 + 22655 QWLAAVLL 8 47 457.2793477738228 NaN 0 457.2644348144531 PEAK HCD FTMS 0 0 0 19418 26410.375 0.9179775957482009 -1 0.0229034423828125 6 Unmodified _QWLAAVLL_ ENSG00000172260|ENST00000357731|NEGR1 2.577480529830294 0.38822285293237185 1 R 1 8 4.6041 0 0 0.50453 0 0 132.1069610732331 621.3038411130606 753.4108021862937 0 0 0 0 0 0 0 0 0 R 0.50453 - 15 + NaN NaN 92357.8 NaN 15698 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19425 79.877 NaN 200810 35 0 36424 0.261 + 26994 SYLPISPTF 9 53 512.7711471087971 1023.5277412843942 2 512.7711181640625 MULTI HCD FTMS 0 0 0 19418 70693.6484375 0.39612981386319757 5 -0.1498870849609375 7 Unmodified _SYLPISPTF_ ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2 29.081581746732265 0.1154664336125038 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[{I|L}P][TP]{M(Oxidation (M))|F} 9 2 + 35.391 0 0 3.4578 3.4578 59.567 0 0 0 4.946049681132941 19.818168375014487 4.946049681132941 0 0 0.5 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[{I|L}P][TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]S[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[TP]V[TP]{M(Oxidation (M))|F} 3.4578;3.4578;2.0869 -;+;- + 92 NaN NaN 110832.6 NaN 15699 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19426 79.88 NaN 192020 35 0 17726 0.262 + 21033 PLSGGRKH 8 58 426.2456609931944 850.4767690531888 2 426.24615478515625 MULTI HCD FTMS 0 0 0 19418 72695.6328125 0.9096192421991085 -1 0.0229034423828125 8 Unmodified _PLSGGRKH_ REV__ENSG00000142798|ENST00000374695|HSPG2;REV__ENSG00000142798|ENST00000374695|HSPG2;REV__ENSG00000142798|ENST00000374695|HSPG2;REV__ENSG00000142798|ENST00000374695|HSPG2;REV__ENST00000493940.2_1_1:22177888-22181121:-|nuORF 2.8892196856762586 0.5377058178582064 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 3 -1 24.437 0 0 2.8733 0 0 0 440.266569428442 440.266569428442 3.0102999566398125 0 0 0 0 0 1.6989700043360187 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 2.8733 - 32 NaN NaN 104310.3 NaN 15700 3724 19418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19428 79.885 NaN 1467900 35 0 230790 0.327 + 32334 VYVGFQVQL 9 81 526.7921085815913 1051.5696642299824 2 526.7925415039062 MULTI HCD FTMS 0 0 0 19427 1012446.1875 0.37768428895335043 -5 0.1344451904296875 1 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 154.46347324262513 4.107785341423729E-06 1 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 103.11 0 0 9.8057 9.8057 93.659 0 0 0 8.240312677277188 8.240312677277188 8.240312677277188 9.208187539523749 0 2.8494850021680094 1.2218487496163564 0 1.079689690656103 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]V{M(Oxidation (M))|F}GQVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]V{M(Oxidation (M))|F}GQV[AG]{I|L};[YV]V{M(Oxidation (M))|F}G[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]VG{M(Oxidation (M))|F}{[VA]|[{I|L}G]}GQ{I|L};[YV]V{M(Oxidation (M))|F}G[AG]V[AG]{I|L};[YV]VG[KS]GVP{M(Oxidation (M))|F} 9.8057;8.9301;8.5903;8.3073;7.7146;7.0918;7.0318;6.5986;5.8164;4.84 +;-;-;-;-;-;-;-;-;- + 1273 NaN NaN 304921.2 NaN 15701 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19429 79.889 NaN 301120 35 0 28274 0.261 + 1483 AYSYFYEAF 9 80 580.7506476435962 1159.4867423539922 2 580.7511596679688 MULTI HCD FTMS 0 0 0 19427 154683.90625 0.9774950721748773 4 -0.1203460693359375 2 Unmodified _AYSYFYEAF_ ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11 13.90604991867851 0.24021115267848145 1 YY{M(Oxidation (M))|F} 3 6 45.852 0 0 3.9545 0 0 0 683.3022340774371 683.3022340774371 24.437718113663685 0 0 0 0 0.6643943297944485 2 0 0 YY{M(Oxidation (M))|F} 3.9545 - 159 + NaN NaN 132598.5 NaN 15702 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19430 79.893 NaN 369490 35 0 33037 0.261 -1 0 100 523.3035352520095 1044.592517570819 2 523.3038330078125 MULTI HCD FTMS 0 0 0 19427 158107.65625 1 0 0 3 NaN NaN 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[VA]|[{I|L}G]}RQ 6 -1 15.978 0 0 1.5296 0 0 0 327.1886417074916 327.1886417074916 1.3739499846542476 0 0 0 0 0 1.3979400086720375 0.25 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[VA]|[{I|L}G]}RQ 1.5296 - 392 NaN NaN 141209.1 NaN 15703 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19431 79.896 NaN 234850 35 0 21186 0.261 -1 IGICGGFAFIL 11 79 584.3136821755037 NaN 0 584.3139038085938 PEAK HCD FTMS 0 0 0 19427 53294.94140625 0.5528924611082938 1 -0.026123046875 4 Carbamidomethyl (C) _IGIC(Carbamidomethyl (C))GGFAFIL_ nc|ENSG00000184716|A6NH21|SERINC4 15.847184025352803 0.28876306271177554 1 {I|L}YMK 4 -1 23.972 0 0 2.0549 0 0 131.09570880627263 497.1886385553344 628.284347361607 0 0 0 0 0 0.805462187404089 0 0 0 {I|L}YMK 2.0549 - 139 + NaN NaN 116830.4 NaN 15704 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19432 79.9 NaN 294160 35 0 25703 0.261 + 32034 VYPNRRSW 8 70 539.2849997661353 NaN 0 539.2684936523438 PEAK HCD FTMS 0 0 0 19427 17490.20703125 0.7137377800608212 -1 0.029541015625 5 Unmodified _VYPNRRSW_ REV__ENSG00000072849|ENST00000158771|DERL2;REV__ENST00000576551.5_1_17:5381279-5384450:-|nuORF 9.347437153973935 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.64927 0 0 131.13092209059647 829.319025708672 960.4499477992686 0 0 0 0 0 0 0 0 0 {I|L} 0.64927 - 29 + NaN NaN 125056.7 NaN 15705 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19433 79.903 NaN 222440 35 0 77041 0.261 -1 LYPQFMFHL 9 49 606.2990095347391 1210.583466136278 2 606.30029296875 MULTI HCD FTMS 0 0 0 19427 60811.51171875 0.4047610269532377 40 -1.1529693603515625 6 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 8.593279151180031 0.2858735984551981 1 [Y{I|L}][QP]{[VA]|[{I|L}G]}H 7 -1 15.462 0 0 1.2773 0 0 0 399.14924036197505 399.14924036197505 10.8581132860661 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}][QP]{[VA]|[{I|L}G]}H 1.2773 - 11 + NaN NaN 125467.9 NaN 15706 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19434 79.906 NaN 272100 35 0 29721 0.261 + 12637 KWFESGPLLF 10 64 612.328953113696 1222.643353294192 2 612.32763671875 MULTI HCD FTMS 0 0 0 19427 104747.875 1 0 0 7 Unmodified _KWFESGPLLF_ ENST00000606994.1_1_5:32174612-32175047:+|nuORF 40.23920728925047 0.14333095755487663 1 [WK]{M(Oxidation (M))|F}ESG{I|L}P{I|L}{M(Oxidation (M))|F} 10 2 + 56.63 0 0 4.6317 4.6317 86.598 0 0 0 3.7751372576825304 43.44212497064703 3.7751372576825304 9.943415770716157 0 1.8737125054200234 0 0.4247425010840047 0 [WK]{M(Oxidation (M))|F}ESG{I|L}P{I|L}{M(Oxidation (M))|F};[YQ][W{I|L}]SG{I|L}P{I|L}{M(Oxidation (M))|F};[WK]{M(Oxidation (M))|F}ESG{I|L}QTK;[RH][PA]ESG{I|L}P{I|L}{M(Oxidation (M))|F};[WK]{M(Oxidation (M))|F}ESG{I|L}[AG]TK;[YQ][W{I|L}]SG{I|L}QTK;[WK]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[HK]{I|L}{M(Oxidation (M))|F};[WK][DV][YR]P{I|L}{M(Oxidation (M))|F};[WK]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[H{I|L}]K{M(Oxidation (M))|F};[YQ]T{[RE]|[WV]}G{I|L}P{I|L}{M(Oxidation (M))|F} 4.6317;3.8185;2.6125;2.0246;1.8629;1.7992;1.7945;1.2415;1.1393;1.0788 -;-;-;-;-;-;-;-;-;- 181 NaN NaN 126916.6 NaN 15707 3725 19427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19436 79.911 NaN 808220 35 0 185770 0.327 + 17591 LYWEPAEVF 9 69 577.2808782729098 NaN 0 577.28076171875 PEAK HCD FTMS 0 0 0 19435 395047.53125 0.769784209898794 5 -0.15325164794921875 1 Unmodified _LYWEPAEVF_ ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 23.1484247019978 0.16626532474190622 1 EP{I|L} 3 7 25.802 0 0 2.2387 0 0 147.08266686825874 663.2406710260374 810.3233378942962 0 0 0 0 0 0.6989700043360187 0 0.5 0 EP{I|L} 2.2387 - 22 + NaN NaN 204863.1 NaN 15708 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19437 79.916 NaN 950640 35 0 175650 0.261 + -1 AEFEYLVQM 9 96 573.2616551029689 NaN 0 573.280517578125 PEAK HCD FTMS 0 0 0 19435 35470.87890625 0.9774098406992926 -4 0.11151885986328125 2 Oxidation (M) _AEFEYLVQM(Oxidation (M))_ REV__ENSG00000198758|ENST00000361965|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-3|EPS8L3 34.10243960390752 0.09718911733815057 1 EEDT{I|L}N{I|L} 7 -1 54.233 0 0 4.7385 0 0 165.0403043217346 162.05608545474846 327.0963897764831 0 0 0 0 0 0 0 0.6989700043360187 1.579689690656103 EEDT{I|L}N{I|L} 4.7385 - 1459 + NaN NaN 229653.2 NaN 15709 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19438 79.919 NaN 773540 35 0 140070 0.261 + 4543 EYLIVFPKL 9 75 561.3338653005517 1120.6531776679033 2 561.3344116210938 MULTI HCD FTMS 0 0 0 19435 271843.96875 0.03505490256622796 16 -0.47916412353515625 3 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 111.28704002717404 0.0027322905094575235 1 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}P[K{I|L}] 9 0 + 77.004 0 0 6.8713 6.8713 93.703 0 0 0 1.3685732445076724 1.3685732445076724 1.3685732445076724 34.02704069166865 0 2.341129063296272 1.5228787452803376 0 0.25 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}P[K{I|L}];[Y{I|L}]E{I|L}V{M(Oxidation (M))|F}P[K{I|L}] 6.8713;3.835 +;- + 689 + NaN NaN 196486.2 NaN 15710 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19439 79.923 NaN 478050 35 0 69604 0.261 + 34697 YPVEDYLDL 9 76 563.7693464983057 1125.5241400634113 2 563.7692260742188 MULTI HCD FTMS 0 0 0 19435 188072.0625 0.5712025480146881 1 -0.03281402587890625 4 Unmodified _YPVEDYLDL_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 25.399314129420986 0.14091189997036632 1 Y{I|L}D{I|L} 4 5 40.433 0 0 3.5924 0 0 603.251756736525 0 603.251756736525 0 20.142594153669222 0 0 0 1 0 0 0 + Y{I|L}D{I|L} 3.5924 + + 202 NaN NaN 144500 NaN 15711 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19440 79.926 NaN 639470 35 0 59641 0.261 + 19920 NYFPFQWKL 9 77 621.8170285860915 1241.619504238983 2 622.3180541992188 MULTI HCD FTMS 0 0 0 19435 142809.5 0.3783865375024954 -4 0.11151885986328125 5 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 81.89019881105858 0.005240739447516426 1 [YN]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QWK{I|L} 9 0 + 76.37 0 0 6.1509 6.1509 88.185 0 0 0 27.954008021417764 51.320976736979404 27.954008021417764 9.208187539523749 0 1.805462187404089 1.6989700043360187 0.3054621874040891 1.0189301784845295 + + [YN]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QWK{I|L};[YN]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]WK{I|L};[{M(Oxidation (M))|F}E]{I|L}[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[MT][HV]{[CP]|[EA]}QWK{I|L};[{M(Oxidation (M))|F}E]{I|L}[{I|L}A]{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WK][PA]G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YN]{I|L} 6.1509;5.4092;1.8434;1.6736;1.2471;1.0209 +;-;-;-;-;- + 174 NaN NaN 178166.2 NaN 15712 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19441 79.929 NaN 333110 35 0 65467 0.261 + 2439 DPTSSSPCPLL 11 79 558.7650671217652 1115.5155813103304 2 558.7655029296875 MULTI HCD FTMS 0 0 0 19435 58243.921875 0.31405879949280274 5 -0.15325164794921875 6 Unmodified _DPTSSSPCPLL_ REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF 21.536976647645854 0.2694300281126922 1 [PS]EY{M(Oxidation (M))|F}EVV{M(Oxidation (M))|F} 9 -1 + 33.966 0 0 3.0449 3.0449 88.102 0 0 0 0.6990769661564471 3.2788653714630627 0.6990769661564471 33.96645299770719 0 1.2416440611282626 0 0 0 [PS]EY{M(Oxidation (M))|F}EVV{M(Oxidation (M))|F} 3.0449 - 70 + NaN NaN 141468.1 NaN 15713 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19442 79.932 NaN 258070 35 0 14724 0.261 + 35608 YYIFIPSKF 9 62 589.3186992613997 NaN 0 589.3179931640625 PEAK HCD FTMS 0 0 0 19435 53001.23828125 0.71821030281639 -9 0.2393341064453125 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 1 {I|L} 1 8 16.237 0 0 1.38 0 0 326.12741531259616 734.3896716240807 1060.5170869366768 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.38 + + 31 + NaN NaN 122967.8 NaN 15714 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19443 79.936 NaN 207830 35 0 43636 0.261 + -1 YFFQVCFVC 9 62 635.2733904344898 1268.5322279357795 2 635.2757568359375 MULTI HCD FTMS 0 0 0 19435 55364.44921875 0.6581759442301343 -1 0.026123046875 8 2 Carbamidomethyl (C) _YFFQVC(Carbamidomethyl (C))FVC(Carbamidomethyl (C))_ REV__chr3:167720273-167734837|128|10.2|0.34|4.93|-|2|PDCD10,None|3;REV__ENST00000461494.5_2_3:167438002-167452226:-|nuORF 4.75600775471527 0.31496297302216103 1 {I|L} 1 -1 6.9897 0 0 0.55101 0 0 63.999226857193726 1088.4257237624213 1152.424950619615 0 0 0 0 0 0 0 0 0 {I|L} 0.55101 - 28 + NaN NaN 114445.6 NaN 15715 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19444 79.939 NaN 97347 35 0 24430 0.261 -1 CMEEEPTHLK 10 42 637.2793059866924 1272.5440590401847 2 638.2813110351562 MULTI HCD FTMS 0 0 0 19435 28716.48828125 0.2566389077771973 -9 0.2393341064453125 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))MEEEPTHLK_ ENSG00000165029|ENST00000374736|ABCA1 1.3295316138638542 0.46826628246186464 1 T 1 -1 6.9897 0 0 0.54927 0 0 62.01011589104139 1106.4927462213502 1168.5028621123915 0 0 0 0 0 0 0 0 0 T 0.54927 + + 5 + NaN NaN 94370.9 NaN 15716 3726 19435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19446 79.944 NaN 6122200 35 0 1074700 0.327 + 32270 VYTVVDEMFL 10 90 616.299301352522 1230.5840497718439 2 616.2998046875 MULTI HCD FTMS 0 0 0 19445 4367310.5 1 0 0 1 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 1 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 126.74 0 0 10.299 10.299 96.14 0 0 0 20.993624753846092 68.73351407259123 20.993624753846092 14.330984399557423 0 3.1861818737241734 1.5228787452803376 2.9291746928241125 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YV]VTVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]TVDEV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]VTVDEYM{I|L} 10.299;9.1344;8.8042;8.772;8.7012;8.3643;7.8543;7.7008;7.6186;7.6075 +;-;-;-;-;-;-;-;-;- + 6590 NaN NaN 778857.1 NaN 15717 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19447 79.948 NaN 5672100 35 0 538440 0.205 + 17259 LYPLTNYTF 9 110 566.289701364897 1130.564849796594 2 566.2906494140625 MULTI HCD FTMS 0 0 0 19445 3852035.5 0.7301111002020865 3 -0.09752655029296875 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 206.74871869215147 9.242385646021313E-18 1 Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F} 9 2 + 121.83 0 0 10.776 10.776 89.291 0 0 0 0.07719803205516484 0.07719803205516484 0.07719803205516484 0.07719803205516484 0 3.4247425010840047 1.5228787452803376 1.6819235388994782 0.6382104921644451 Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};Y{I|L}P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[Y{I|L}]PSQ{I|L}YT{M(Oxidation (M))|F} 10.776;10.769;9.7891;9.3967;9.33;9.2661;8.3502;8.2863;8.1149;7.492 -;+;-;-;-;-;-;-;-;- + 5388 + NaN NaN 623015.4 NaN 15718 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19448 79.951 NaN 659090 35 0 139420 0.261 + 26059 SPEYFEPIL 9 62 547.7737199874349 1093.5328870416697 2 547.7740478515625 MULTI HCD FTMS 0 0 0 19445 416149.59375 0.3575467822691334 6 -0.17954254150390625 3 Unmodified _SPEYFEPIL_ ENSG00000104756|ENST00000221200|KCTD9;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF 46.020951573049366 0.037705236580089195 1 {M(Oxidation (M))|F}EP{I|L}{I|L} 5 4 58.443 0 0 5.3445 0 0 476.1898365705094 0 476.1898365705094 0 33.54880034054716 0 0 0 1.8494850021680094 0 0.3494850021680094 0 + {M(Oxidation (M))|F}EP{I|L}{I|L} 5.3445 + + 233 NaN NaN 177672.3 NaN 15719 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19449 79.954 NaN 718300 35 0 54717 0.261 + -1 ASSCNYYCFL 10 95 642.7548128767369 1283.4950728202737 2 642.75537109375 MULTI HCD FTMS 0 0 0 19445 212805.421875 0.9037266227608134 1 -0.0318603515625 4 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 4.897010918128616 0.4493830473644964 1 QY[WM]V[PS]{M(Oxidation (M))|F}{I|L} 9 -1 17.756 0 0 1.3834 0 0 113.93479973144879 0 113.93479973144879 0 0.47614693140829445 0 0 0 0.8296896906561031 0 0.6861818737241735 0 QY[WM]V[PS]{M(Oxidation (M))|F}{I|L} 1.3834 - 872 + NaN NaN 195866.4 NaN 15720 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19450 79.958 NaN 324300 35 0 28707 0.261 + 20405 NYYFGVYLAI 10 64 611.8113338125005 1221.608114691801 2 612.3260498046875 MULTI HCD FTMS 0 0 0 19445 43909.51953125 0.19176108661619562 -5 0.1443328857421875 5 Unmodified _NYYFGVYLAI_ REV__ENSG00000103546|ENST00000568943|SLC6A2;REV__nc|ENSG00000103546|P23975-2|SLC6A2;REV__nc|ENSG00000103546|P23975-3|SLC6A2 10.823927491677226 0.4098686510432541 1 [YN]Y 3 -1 32.236 0 0 2.6388 0 0 0 778.4155367486936 778.4155367486936 10.782184059010262 0 0 0 0 0.805462187404089 1.5228787452803376 0 0 [YN]Y 2.6388 + + 154 + NaN NaN 125584.4 NaN 15721 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19451 79.961 NaN 257350 35 0 18885 0.261 + 5592 FLPYHVLLL 9 72 557.8363558505438 1113.6581587678875 2 557.8366088867188 MULTI HCD FTMS 0 0 0 19445 58445.16015625 0.6166157736841945 3 -0.09752655029296875 6 Unmodified _FLPYHVLLL_ ENSG00000119714|ENST00000650645|GPR68 20.871210003555333 0.18003371494288972 1 [Y{I|L}][{I|L}P][HV]{M(Oxidation (M))|F}{I|L}{I|L} 9 3 + 37.852 0 0 3.3989 3.3989 88.532 0 0 0 14.893324630099876 13.899699876253784 13.899699876253784 37.852124803540626 0 0.25 1.6989700043360187 0 0 [Y{I|L}][{I|L}P][HV]{M(Oxidation (M))|F}{I|L}{I|L} 3.3989 - 145 NaN NaN 111307.1 NaN 15722 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19452 79.964 NaN 70593 35 0 4743.4 0.261 -1 0 48 509.8037789060589 1017.5930048789178 2 509.80377197265625 MULTI HCD FTMS 0 0 0 19445 70312.4140625 0.19519196068395347 42 -1.2189178466796875 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5217 0 0 852.5140081521585 0 852.5140081521585 0 8.91773141135175 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5217 - 12 + NaN NaN 92608.9 NaN 15723 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19453 79.968 NaN 500710 35 0 49425 0.261 + -1 LYHSTCMSHIL 11 80 454.5503345983587 1360.629174395276 3 454.55108642578125 MULTI HCD FTMS 0 0 0 19445 118377.609375 0.5207582116418926 -3 0.08847808837890625 8 Carbamidomethyl (C) _LYHSTC(Carbamidomethyl (C))MSHIL_ REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I;REV__SH3BP1-CACNA1I|1|fusion 13.51866281300042 0.33929385944539686 1 {I|L}Y[C(Carbamidomethyl (C))C]{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 9 -1 55.881 0 0 4.107 0 0 0 128.0715731256469 128.0715731256469 25.615517577439064 0 0 0 0 1.6989700043360187 2 0.8494850021680094 0 {I|L}Y[C(Carbamidomethyl (C))C]{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 4.107 - 308 + NaN NaN 169932.3 NaN 15724 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19454 79.971 NaN 128870 35 0 11064 0.261 -1 QIQKYTDCLQF 11 42 481.9023011178617 NaN 0 481.90240478515625 PEAK HCD FTMS 0 0 0 19445 30609.1171875 0.5199319199284829 1 -0.0318603515625 9 Carbamidomethyl (C) _QIQKYTDC(Carbamidomethyl (C))LQF_ ENSG00000139970|ENST00000267484|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF;ENST00000474911.5_1_14:60063465-60074250:-|nuORF;ENST00000481205.5_1_14:60072082-60072247:-|nuORF;ENST00000490111.1_1_14:60070558-60072217:-|nuORF;nc|ENSG00000139970|Q16799-2|RTN1;nc|ENSG00000139970|Q16799-3|RTN1 2.6312355333042263 0.3346560860168035 1 P 1 -1 5.4846 0 0 0.57024 0 0 112.43453280037347 749.2770479791624 861.7115807795359 0 0 0 0 0 0 0 0 0 P 0.57024 - 1 + NaN NaN 104651.3 NaN 15725 3727 19445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19456 79.976 NaN 741470 35 0 102430 0.327 -1 YYMDYLAAL 9 87 569.75958373651 1137.5046145398198 2 569.7598876953125 MULTI HCD FTMS 0 0 0 19455 495369.9375 0.6300465146966648 9 -0.26861572265625 1 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 26.88365393820708 0.12808753336095696 1 Y{I|L}AA{I|L} 5 -1 49.068 0 0 4.3137 0 0 588.1905384748062 0 588.1905384748062 0 32.15681882079494 0 0 0 1.5 0 0 0 Y{I|L}AA{I|L} 4.3137 + + 471 NaN NaN 196220.1 NaN 15726 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19457 79.98 NaN 1360700 35 0 103110 0.261 + 13441 KYPENFFLL 9 113 585.8132425088911 1169.6119320845821 2 585.8140869140625 MULTI HCD FTMS 0 0 0 19455 660622.6875 0.0033321228994627225 161 -4.3988800048828125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.009787749748478139 1 [{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 5 + 53.976 0 0 4.6148 4.6148 80.842 0 0 0 0.38705080074258547 10.571516336144882 0.38705080074258547 0.38705080074258547 0 1.1549471895720984 1.6989700043360187 0.2742275032520141 0.9595083459089814 [{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}DK{M(Oxidation (M))|F}{I|L}{I|L};[YV]DP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}PP{I|L}{I|L};[YV]D{[WS]|[C(Carbamidomethyl (C)){I|L}]}K{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F}K{I|L}{I|L};[YK]YYNPP{I|L}{I|L};[YV]D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}K{I|L}{I|L} 4.6148;4.5817;4.1787;4.0963;3.9509;3.9457;3.7944;3.3352;3.2983;3.1847 -;+;-;-;-;-;-;-;-;- + 3304 NaN NaN 290927.2 NaN 15727 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19458 79.984 NaN 683200 35 0 60150 0.261 + 31859 VYMSCFPFFI 10 79 627.2901184239616 1252.5656839147232 2 627.2904052734375 MULTI HCD FTMS 0 0 0 19455 531314.625 1 0 0 3 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 48.345845343767074 0.08380532769255708 1 VYTVVDE{M(Oxidation (M))|F} 8 -1 81.712 0 0 6.5236 0 0 0 297.12388025455317 297.12388025455317 38.18040976044614 0 0 0 0 2.336696871556164 1.6989700043360187 0.7302046884880937 0 VYTVVDE{M(Oxidation (M))|F} 6.5236 - 609 + NaN NaN 184288.5 NaN 15728 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19459 79.987 NaN 495130 35 0 156380 0.264 -1 CGRGAPHA 8 42 413.1929484024883 824.3713438717766 2 413.19329833984375 MULTI HCD FTMS 0 0 0 19455 204001 0.059008244047644876 41 -1.1870574951171875 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 1 Q 1 -1 4.6041 0 0 0.5585 0 0 194.02626438134536 499.2779635065063 693.3042278878517 0 0 0 0 0 0 0 0 0 Q 0.5585 - 3 + NaN NaN 152743.1 NaN 15729 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19460 79.991 NaN 491810 35 0 38530 0.261 + 31681 VYKNYQFI 8 70 537.783443172954 1073.5523334127079 2 537.783935546875 MULTI HCD FTMS 0 0 0 19455 196790.5 0.5047663186879161 -2 0.06467437744140625 5 Unmodified _VYKNYQFI_ REV__ENSG00000005801|ENST00000399602|ZNF195;REV__nc|ENSG00000005801|O14628-4|ZNF195;REV__nc|ENSG00000005801|O14628-5|ZNF195;REV__nc|ENSG00000005801|O14628-6|ZNF195;REV__nc|ENSG00000005801|O14628-7|ZNF195 28.173230860318316 0.38285857429842723 1 [YV]VG{M(Oxidation (M))|F}Q[KS]{M(Oxidation (M))|F} 9 -1 + 50.81 0 0 4.7329 4.7329 81.932 0 0 0 30.75598187154718 13.357092117453874 13.357092117453874 2.2177870036582306 0 1.3882104921644451 1.6989700043360187 0 0.3494850021680094 [YV]VG{M(Oxidation (M))|F}Q[KS]{M(Oxidation (M))|F};[YV]VG{M(Oxidation (M))|F}K{[QS]|[NT]}{M(Oxidation (M))|F};[YV]VG{M(Oxidation (M))|F}[AG][KS]{M(Oxidation (M))|F};[YV]R{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}{M(Oxidation (M))|F};[YV]V{M(Oxidation (M))|F}{[QG]|[NA]}[KS]{M(Oxidation (M))|F};{I|L}{I|L}[NG]G[NS]GVM{I|L};{I|L}{I|L}[NG]G[NS]GVP{M(Oxidation (M))|F};{I|L}{I|L}[NG][WE]VP{M(Oxidation (M))|F};{I|L}{I|L}[NG]GQ[QT]M{I|L};{I|L}{I|L}[NG]GQ[QT]P{M(Oxidation (M))|F} 4.7329;4.5263;3.8752;3.4109;2.473;2.2906;2.1167;1.9912;1.2086;1.0348 -;-;-;-;-;-;-;-;-;- 417 + NaN NaN 154215.6 NaN 15730 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19461 79.994 NaN 247490 35 0 35390 0.262 -1 0 57 423.85066820753997 1268.53017522282 3 423.8509826660156 MULTI HCD FTMS 0 0 0 19455 68843.6640625 0.37660551164478345 1 -0.02954864501953125 6 NaN NaN 1 VY 2 -1 44.776 0 0 3.5298 0 0 0 1003.3763139600837 1003.3763139600837 39.291746928241125 0 0 0 0 0.3807196863200844 2 0 0 VY 3.5298 - 6 + NaN NaN 113556.8 NaN 15731 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19462 79.997 NaN 184270 35 0 34536 0.261 -1 DYICPRCESGF 11 53 468.52876657806274 1402.5644703343883 3 468.8636779785156 MULTI HCD FTMS 0 0 0 19455 52715.51171875 0.6329986777320031 1 -0.02954864501953125 7 2 Carbamidomethyl (C) _DYIC(Carbamidomethyl (C))PRC(Carbamidomethyl (C))ESGF_ ENSG00000070423|ENST00000292363|RNF126;ENST00000591394.2_1_19:651609-663133:-|nuORF;ENST00000592626.3_1_19:652824-663133:-|nuORF;RNF126-PRSS57|1|fusion 5.868138319507137 0.39318500527288264 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.5678 0 0 1237.4853057609491 0 1237.4853057609491 0 17.385606273598313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.5678 + + 64 + NaN NaN 107008.7 NaN 15732 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19463 80.001 NaN 256970 35 0 27138 0.261 + 24220 RYFLPPYTF 9 77 602.3135266082954 1202.6125002833908 2 602.8159790039062 MULTI HCD FTMS 0 0 0 19455 26685.154296875 0.42024984425335643 28 -0.794525146484375 8 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 22.736283301280096 0.1639198954644489 1 T{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1594 0 0 936.4875561984679 0 936.4875561984679 0 8.355087972993655 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1594 + + 219 NaN NaN 124220.1 NaN 15733 3728 19455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19465 80.005 NaN 708780 35 0 65486 0.327 + 21058 PLVTFVYVF 9 83 542.8085748879266 NaN 0 542.7911376953125 PEAK HCD FTMS 0 0 0 19464 7389.15576171875 0.7100473662355455 1 -0.0361175537109375 1 Unmodified _PLVTFVYVF_ ENSG00000092068|ENST00000316902|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8 30.224811164608877 0.11876709777893199 1 VY 2 7 14.776 0 0 1.3636 0 0 165.0800945051073 653.3669664215477 818.447060926655 0 0 0 0 0 0.3807196863200844 0 0 0 + VY 1.3636 + + 161 + NaN NaN 186117.2 NaN 15734 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19466 80.01 NaN 369230 35 0 16094 0.261 + 23009 RARDVEIV 8 70 479.2774935703601 956.5404342075202 2 479.2773742675781 MULTI HCD FTMS 0 0 0 19464 412598.40625 0.38648496955458983 45 -1.298583984375 2 Unmodified _RARDVEIV_ REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1 4.3292370932331545 0.5355693454741696 1 Q 1 -1 11.722 0 0 1.2254 0 0 458.2738154104483 367.1969088190063 825.4707242294546 0 0 0 0 0 0.7742275032520141 0 0 0 Q 1.2254 - 46 + NaN NaN 145006.3 NaN 15735 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19467 80.013 NaN 1076100 35 0 126430 0.261 + 19921 NYFPFQWKL 9 112 621.8170285860915 1241.619504238983 2 621.819091796875 MULTI HCD FTMS 0 0 0 19464 326563.3125 0.7202643563492489 -1 0.02954864501953125 3 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 107.1870275148908 0.00340162908551068 1 NY{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QWK{I|L} 9 0 + 77.786 0 0 6.2649 6.2649 88.373 0 0 0 42.43366233870753 9.009461452434238 9.009461452434238 9.208187539523749 0 2.610924374808178 1.6989700043360187 0 0.7396518287104438 + + NY{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QWK{I|L};NY{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]WK{I|L};[YN]A[RP]A[Y{M(Oxidation (M))|F}]K{I|L};[MT][HV]{[CP]|[EA]}QWK{I|L};[Y{I|L}][DP]{I|L}W[WH]{I|L};[Y{I|L}]C[HV]H{[ET]|[MV]}K{I|L};[WK][WD]H{[ET]|[MV]}K{I|L};[Y{I|L}]CA[R{M(Oxidation (M))|F}][DN]K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[W{I|L}][Y{M(Oxidation (M))|F}]K{I|L};[MT]{M(Oxidation (M))|F}[HV]H{[ET]|[MV]}K{I|L} 6.2649;5.5232;3.9388;1.9612;1.8775;1.841;1.5615;1.2923;1.0582;0.81574 +;-;-;-;-;-;-;-;-;- + 1282 + NaN NaN 240876.4 NaN 15736 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19468 80.017 NaN 460260 35 0 21831 0.263 -1 0 88 487.79078151675463 973.5670101003093 2 487.7908020019531 MULTI HCD FTMS 0 0 0 19464 217247.25 0.3500195201791929 45 -1.298583984375 4 NaN NaN 1 VAQSAK[Q{I|L}] 8 -1 16.481 0 0 1.6928 0 0 130.08045111769053 0 130.08045111769053 0 2.5015175618957954 0 0 0 0.2742275032520141 0 0 0.21346799108044048 VAQSAK[Q{I|L}] 1.6928 - 278 + NaN NaN 156295.1 NaN 15737 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19469 80.02 NaN 733450 35 0 178820 0.261 + 17303 LYPQFMFHL 9 91 598.3019807680839 1194.5894086029678 2 598.3023071289062 MULTI HCD FTMS 0 0 0 19464 302746 0.11055896833151257 16 -0.466766357421875 5 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 57.47134341890925 0.0211188941628804 1 {I|L}Y[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 56.947 0 0 4.7671 4.7671 82.442 0 0 0 14.160006443871893 3.139406530592268 3.139406530592268 3.139406530592268 0 2.0114393726401687 1.6989700043360187 0 0 + + {I|L}Y[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]S{[RE]|[WV]}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]S{[RE]|[WV]}MH{M(Oxidation (M))|F}{I|L};[YT]V{[RE]|[WV]}M{M(Oxidation (M))|F}H{I|L};[YT]V{[RE]|[WV]}MH{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}VTPM{M(Oxidation (M))|F}H{I|L};[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}H{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}VTPMH{M(Oxidation (M))|F}{I|L};{I|L}[QP]Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{M(Oxidation (M))|F}{I|L} 4.7671;4.5043;4.4273;3.0349;2.9579;2.9392;2.8109;2.6433;2.5269;2.5151 +;-;-;-;-;-;-;-;-;- + 3041 + NaN NaN 194523.6 NaN 15738 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19470 80.023 NaN 392960 35 0 53523 0.261 + 10582 IPLYIDDTL 9 72 531.7892875768034 1061.5640222204067 2 531.7896118164062 MULTI HCD FTMS 0 0 0 19464 229983.78125 0.698771897741953 4 -0.118133544921875 6 Unmodified _IPLYIDDTL_ ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2 74.42276476219924 0.007657080072768255 1 [Y{I|L}][{I|L}P]{I|L}DDT{I|L} 9 2 + 61.11 0 0 5.7566 5.7566 91.841 0 0 0 14.383024673460064 36.92348741261036 14.383024673460064 36.26410021363376 0 1.274227503252014 2 0.3807196863200844 0 [Y{I|L}][{I|L}P]{I|L}DDT{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}P{I|L} 5.7566;2.3405 -;- 180 NaN NaN 139662.6 NaN 15739 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19471 80.027 NaN 446910 35 0 34071 0.261 + 3047 EAFQGEQNDF 10 93 592.7451278395515 1183.475702745903 2 592.74462890625 MULTI HCD FTMS 0 0 0 19464 92325.1328125 0.3742408614722412 3 -0.0919189453125 7 Unmodified _EAFQGEQNDF_ ENSG00000186230|ENST00000334181|ZNF749 12.872603262515298 0.3907060291096084 1 ND{M(Oxidation (M))|F} 3 7 18.315 0 0 1.5475 0 0 789.3338641612861 0 789.3338641612861 0 7.5841107931747995 0 0 0 0.7302046884880937 0 0 0 + ND{M(Oxidation (M))|F} 1.5475 + + 320 NaN NaN 154319.9 NaN 15740 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19472 80.03 NaN 998660 35 0 174270 0.262 + 14123 LADEVITVF 9 77 503.7763649290773 1005.5381769249547 2 503.7767333984375 MULTI HCD FTMS 0 0 0 19464 241284.828125 0.26697948434339475 -3 0.0942230224609375 8 Unmodified _LADEVITVF_ ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 71.13359017698441 0.008721403657255008 1 V{I|L}TV{M(Oxidation (M))|F} 5 4 63.118 0 0 6.277 0 0 428.19017226386876 0 428.19017226386876 0 39.17272105161821 0 0 0 2.305462187404089 0 0.75 0 + V{I|L}TV{M(Oxidation (M))|F} 6.277 + + 166 NaN NaN 234316.7 NaN 15741 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19473 80.033 NaN 580540 35 0 112540 0.261 + 4808 EYVFSVSTF 9 79 539.7578700390065 1077.501187144813 2 539.7584228515625 MULTI HCD FTMS 0 0 0 19464 125426.671875 0.41735601170361464 -3 0.0942230224609375 9 Unmodified _EYVFSVSTF_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 61.357469665136826 0.01568246967499496 1 VST{M(Oxidation (M))|F} 4 5 35.305 0 0 3.2766 0 0 625.2738749883662 0 625.2738749883662 0 14.336068845642203 0 0 0 1.2614393726401687 0 0.4247425010840047 0 + VST{M(Oxidation (M))|F} 3.2766 + + 306 + NaN NaN 163320.1 NaN 15742 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19474 80.037 NaN 227860 35 0 31731 0.261 + 29882 VFDIHVIDF 9 64 552.7898891660711 1103.5652253989422 2 552.7899780273438 MULTI HCD FTMS 0 0 0 19464 86273.421875 0.027933492262782963 20 -0.5782394409179688 10 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 68.08070601005525 0.009709267492204555 1 [{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F} 9 0 + 49.524 0 0 4.4876 4.4876 83.786 0 0 0 5.6424927368725974 41.564725233975324 5.6424927368725974 7.257724967479859 0 1.774227503252014 0 0 0 + + [{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HVEV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][HV]EV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HVEV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]};[{M(Oxidation (M))|F}V][HV]EVEV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HV{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]};[{M(Oxidation (M))|F}V][HV]EV{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]};[{M(Oxidation (M))|F}V][HV]{M(Oxidation (M))|F}{I|L}D{NN|[MP]|[D{I|L}]|[EV]} 4.4876;3.8299;3.489;3.222;2.8313;2.2672;2.2233;2.1551;0.88949;0.09142 +;-;-;-;-;-;-;-;-;- + 119 NaN NaN 115423.6 NaN 15743 3729 19464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19476 80.041 NaN 3980700 35 0 569940 0.327 + 32335 VYVGFQVQL 9 109 526.7921085815913 1051.5696642299824 2 526.79248046875 MULTI HCD FTMS 0 0 0 19475 2680668 1 0 0 1 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 170.55093314911917 3.526520053928E-09 1 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 103.11 0 0 9.8057 9.8057 93.659 0 0 0 14.232712163289278 64.29046065495055 14.232712163289278 9.208187539523749 0 2.8494850021680094 1.2218487496163564 0 1.079689690656103 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QVAAV;[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]VG{M(Oxidation (M))|F}Q[Q{I|L}]V;[YV]VG{M(Oxidation (M))|F}[AG]VAAV;[YV]VG{M(Oxidation (M))|F}[AG][Q{I|L}]V;[YV]VG[KS]GVP{M(Oxidation (M))|F};[YV]VG[KS]G{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V 9.8057;8.9301;8.3073;7.9536;7.0318;6.5665;6.4593;5.3585;5.197;4.1024 +;-;-;-;-;-;-;-;-;- + 3478 NaN NaN 686393.4 NaN 15744 3730 19475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19477 80.046 NaN 466200 35 0 55241 0.261 + 3727 EMKDIQQAIF 10 78 611.8113338125005 1221.608114691801 2 611.8107299804688 MULTI HCD FTMS 0 0 0 19475 305518.46875 0.9467859258166019 -2 0.06566619873046875 2 Unmodified _EMKDIQQAIF_ ENSG00000248905|ENST00000616417|FMN1;ENST00000558628.1_1_15:33200689-33218453:-|nuORF;nc|ENSG00000248905|Q68DA7-5|FMN1 17.11289562659939 0.35104376501799556 1 [YN]YDK{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 9 7 + 77.617 0 0 6.3537 6.3537 93.224 0 0 0 25.642492736872597 48.66495982548642 25.642492736872597 46.947055689656665 0 1.805462187404089 2 0 0.6989700043360187 [YN]YDK{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}Y[YN]{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[RE]|[WV]}{[RE]|[WV]}DK{M(Oxidation (M))|F} 6.3537;2.5107;0.91261 -;-;- 171 NaN NaN 152123.7 NaN 15745 3730 19475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19478 80.05 NaN 277540 35 0 30190 0.261 + 32396 VYWTQLNMF 9 74 609.2866914479455 1216.5588299626909 2 609.2866821289062 MULTI HCD FTMS 0 0 0 19475 162380.984375 0.9149642022003409 -5 0.156463623046875 3 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 96.36657018975838 0.004359138328518304 1 [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 84.632 0 0 6.9566 6.9566 89.682 0 0 0 10.435391898196201 10.435391898196201 10.435391898196201 9.208187539523749 0 2.6237125054200234 1.3010299956639813 0.7302046884880937 0 + + [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YV]WT[AG]{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YC(Carbamidomethyl (C))]{I|L}{I|L}Q[YN]P{M(Oxidation (M))|F} 6.9566;6.1997;6.1997;5.4464;5.0694;4.3125;1.4245 +;-;-;-;-;-;- + 522 NaN NaN 120573.1 NaN 15746 3730 19475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19479 80.053 NaN 328610 35 0 48478 0.263 + 27579 TAEAFQIVL 9 33 496.27639263729594 990.5382323413919 2 496.276611328125 MULTI HCD FTMS 0 0 0 19475 192770.703125 0.6672997653126848 -5 0.156463623046875 4 Unmodified _TAEAFQIVL_ ENSG00000169682|ENST00000311008|SPNS1;ENST00000569969.5_2_16:28993554-28995617:+|nuORF;nc|ENSG00000169682|Q9H2V7-2|SPNS1;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1 34.40172386719151 0.0910440009062557 1 Q{I|L}V{I|L} 4 5 49.68 0 0 5.0155 0 0 519.232548663591 0 519.232548663591 0 39.22290038707452 0 0 0 1.5 0 0 0.4247425010840047 + Q{I|L}V{I|L} 5.0155 + + 47 NaN NaN 132619.1 NaN 15747 3730 19475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19480 80.056 NaN 187960 35 0 16634 0.261 + 23944 RTTGKSVPTV 10 70 523.3035352520095 1044.592517570819 2 523.3038330078125 MULTI HCD FTMS 0 0 0 19475 109545.109375 0.6928513898263545 5 -0.1409149169921875 5 Unmodified _RTTGKSVPTV_ SPATA31E1|p.S910G|1|0.07|ENSG00000177992|chr9:87887215-87887215|A/G|missense_variant 5.731851221503515 0.44496410492002586 1 {M(Oxidation (M))|F} 1 10 14.604 0 0 1.3981 0 0 879.5134598089033 0 879.5134598089033 0 3.802112417116062 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3981 - 52 + NaN NaN 112174.9 NaN 15748 3730 19475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19481 80.06 NaN 249650 35 0 16139 0.263 + 23005 RAPGPGRP 8 80 404.2327122446908 806.4508715561816 2 404.2330627441406 MULTI HCD FTMS 0 0 0 19475 81001.8515625 0.03510871818941111 -8 0.24185943603515625 6 Unmodified _RAPGPGRP_ ENST00000371942.7_1_9:136282908-136283130:-|nuORF;REV__ENSG00000156860|ENST00000356166|FBRS;REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF;REV__nc|ENSG00000156860|Q9HAH7|FBRS 2.302733041254933 0.5385759549224092 1 Q 1 8 9.7763 0 0 1.2123 0 0 176.1047844692908 499.27594934635005 675.3807338156408 0 0 0 0 0 0.7302046884880937 0 0 0 Q 1.2123 - 25 + NaN NaN 124072.7 NaN 15749 3730 19475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19483 80.064 NaN 688490 35 0 150980 0.327 + -1 AEFEYLVQM 9 75 573.2616551029689 NaN 0 573.2808227539062 PEAK HCD FTMS 0 0 0 19482 36290.69140625 1 0 0 1 Oxidation (M) _AEFEYLVQM(Oxidation (M))_ REV__ENSG00000198758|ENST00000361965|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-3|EPS8L3 26.88365393820708 0.14119366324382274 1 {I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L} 7 -1 52.836 0 0 4.6164 0 0 165.0401022275359 162.05610071353752 327.09620294107344 0 0 0 0 0 0 0 1.1989700043360187 1.610924374808178 {I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L} 4.6164 - 248 + NaN NaN 197701.3 NaN 15750 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19484 80.069 NaN 1410100 35 0 344760 0.261 + 11468 IYQGGIFEL 9 80 520.2783276800297 1038.5421024268594 2 520.27685546875 MULTI HCD FTMS 0 0 0 19482 511680.1875 0.2677987822717355 -4 0.1204376220703125 2 Unmodified _IYQGGIFEL_ ENSG00000121858|ENST00000241261|TNFSF10 88.95385435242217 0.004553379958619559 1 [Y{I|L}]QVQ{M(Oxidation (M))|F}E{I|L} 8 3 + 60.461 0 0 5.8217 5.8217 83.188 0 0 0 0.9560089164197478 16.40978057358332 0.9560089164197478 0.9560089164197478 0 1.5021934810768762 0.8860566476931632 0.2742275032520141 0.9916440611282626 [Y{I|L}]QVQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KVQ{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QV[AG]{M(Oxidation (M))|F}E{I|L};[Y{I|L}][AG]VQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KV[AG]{M(Oxidation (M))|F}E{I|L};[YQ]{I|L}VQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};[YQ]{I|L}G{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L} 5.8217;5.7297;5.4855;5.3935;4.9299;4.9299;4.8379;4.7668;4.7145;4.4306 -;-;+;-;-;-;-;-;-;- + 762 NaN NaN 289801.2 NaN 15751 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19485 80.072 NaN 789840 35 0 189240 0.261 + 17304 LYPQFMFHL 9 98 598.3019807680839 1194.5894086029678 2 598.3025512695312 MULTI HCD FTMS 0 0 0 19482 264265.625 0.09650642738626564 18 -0.5192108154296875 3 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 50.855029805455786 0.030374663808198754 1 [Y{I|L}]S{[RE]|[WV]}M{M(Oxidation (M))|F}H{I|L} 9 3 + 52.157 0 0 4.3661 4.3661 81.051 0 0 0 17.430380486862937 16.478174818886373 16.478174818886373 1.4612803567823818 0 1.5044321917401078 1.6989700043360187 0 0 [Y{I|L}]S{[RE]|[WV]}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]S{[RE]|[WV]}MH{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}H{I|L};[YT]V{[RE]|[WV]}M{M(Oxidation (M))|F}H{I|L};[YT]V{[RE]|[WV]}MH{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[RE]|[WV]}M{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[RE]|[WV]}MH{M(Oxidation (M))|F}{I|L};[YT][KG][HC]VK{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KA][HC]VK{M(Oxidation (M))|F}{I|L} 4.3661;4.2438;3.0629;2.907;2.7847;2.711;1.7694;1.647;1.4026;0.26497 -;-;-;-;-;-;-;-;-;- 2857 NaN NaN 204477.4 NaN 15752 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19486 80.076 NaN 525600 35 0 158000 0.263 + 25267 SAVELVVAL 9 44 450.77332468417364 899.5320964351473 2 450.773681640625 MULTI HCD FTMS 0 0 0 19482 181864.75 0.14135928842621906 -4 0.1204376220703125 4 Unmodified _SAVELVVAL_ KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant 74.42276476219924 0.007657080072768255 1 {[VA]|[{I|L}G]}SE{I|L}VVA{I|L} 9 2 + 82.756 0 0 9.1999 9.1999 96.663 0 0 0 24.11831843688759 16.478174818886373 16.478174818886373 24.11831843688759 0 2.492992819099939 1.5228787452803376 0.8494850021680094 0 {[VA]|[{I|L}G]}SE{I|L}VVA{I|L};{[SA]|[TG]}VE{I|L}VVA{I|L} 9.1999;6.5187 -;+ + 54 NaN NaN 154811.8 NaN 15753 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19487 80.079 NaN 755200 35 0 124450 0.261 + 10526 IPFDGDLLSM 10 92 562.2704145855934 1122.5262762379866 2 562.27099609375 MULTI HCD FTMS 0 0 0 19482 148878.546875 0.6298581894322124 1 -0.03289031982421875 5 Oxidation (M) _IPFDGDLLSM(Oxidation (M))_ ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant 81.89019881105858 0.0034965057646611547 1 {I|L}{I|L}S{M(Oxidation (M))|F} 4 6 47.414 0 0 4.2239 0 0 644.2801347358367 0 644.2801347358367 0 26.75348652811705 0 0 0 1.8252574989159953 0 0.7134679910804405 0 + {I|L}{I|L}S{M(Oxidation (M))|F} 4.2239 + + 688 + NaN NaN 196933.8 NaN 15754 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19488 80.082 NaN 526340 35 0 34062 0.261 + 27662 TALNLFFKL 9 67 533.8184314102489 1065.6223098872977 2 533.818603515625 MULTI HCD FTMS 0 0 0 19482 221839.453125 0.040755700649706336 -4 0.1204376220703125 6 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 107.09958533191995 0.0034159042678574016 1 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 109.55 0 0 10.28 10.28 97.202 0 0 0 27.664543211224114 16.478174818886373 16.478174818886373 21.510234424404686 0 2.579689690656103 1.3979400086720375 0.9386218330464625 1.2302046884880937 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}K{I|L};TA{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[TV]|[{I|L}S]}[QA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};TA{I|L}GG{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};[TA]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}K{I|L} 10.28;8.2615;7.684;7.037;6.8199;6.5271;6.4528;6.3684;5.5043;5.4939 +;-;+;-;-;-;-;-;-;- + 779 NaN NaN 163070.6 NaN 15755 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19489 80.086 NaN 423610 35 0 89795 0.261 -1 IYRTFFCF 8 75 577.2808782729098 NaN 0 577.2811889648438 PEAK HCD FTMS 0 0 0 19482 158558.234375 0.3089644043214286 10 -0.29305267333984375 7 Carbamidomethyl (C) _IYRTFFC(Carbamidomethyl (C))F_ ENST00000462616.1_1_9:139310627-139310981:+|nuORF 18.13498045792455 0.38579626240450227 1 C 1 -1 3.9794 0 0 0.34527 0 0 599.2910811247328 447.22178064517817 1046.512861769911 0 0 0 0 0 0 0 0 0 C 0.34527 + + 69 + NaN NaN 150916.7 NaN 15756 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19490 80.089 NaN 663200 35 0 63385 0.261 + 7456 FVTWIEGVM 9 100 549.270890180684 1096.5272274281679 2 549.2713012695312 MULTI HCD FTMS 0 0 0 19482 109228.4765625 0.656285865433948 1 -0.03289031982421875 8 Oxidation (M) _FVTWIEGVM(Oxidation (M))_ ENSG00000122194|ENST00000308192|PLG 112.59319219568356 0.00251905749371435 1 [Y{I|L}]AW{I|L}EGV{M(Oxidation (M))|F} 9 3 + 80.978 0 0 7.385 7.385 93.577 0 0 0 4.401056208558032 4.401056208558032 4.401056208558032 20.421656121837657 0 2.1307196863200843 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]AW{I|L}EGV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TW{I|L}EGV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[KA]C(Carbamidomethyl (C))R{I|L}{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]AW{[DA]|[EG]}{I|L}V{M(Oxidation (M))|F};[Y{I|L}]AW{I|L}[YG][DP];[KA]CGR{I|L}{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]AW{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[PG];[Y{I|L}]A[Y{M(Oxidation (M))|F}]{[HG]|PP}{I|L}N;[{M(Oxidation (M))|F}V]TW{I|L}[YG][DP] 7.385;5.5226;3.8359;3.608;3.4741;3.4327;3.3752;2.9181;2.7697;1.9717 -;+;-;-;-;-;-;-;-;- + 2359 + NaN NaN 179648.8 NaN 15757 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19491 80.092 NaN 366040 35 0 66007 0.261 -1 VFESSKMDF 9 79 553.2481443629056 1104.481735792611 2 553.2479858398438 MULTI HCD FTMS 0 0 0 19482 41481.66015625 0.3019343430087162 1 -0.03289031982421875 9 Oxidation (M) _VFESSKM(Oxidation (M))DF_ ENSG00000136731|ENST00000259253|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF;nc|ENSG00000136731|Q9NYU2-2|UGGT1;UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant 13.50788311687929 0.24365122550260465 1 D{M(Oxidation (M))|F} 2 -1 21.454 0 0 1.9424 0 0 824.3759979479586 0 824.3759979479586 0 3.3572521192556337 0 0 0 0 0 0.3494850021680094 0 D{M(Oxidation (M))|F} 1.9424 + + 431 + NaN NaN 135965.7 NaN 15758 3731 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19493 80.097 NaN 10608000 35 0 2217900 0.327 + 17605 LYYDAIWHF 9 111 614.2951260546212 1226.5756991760422 2 614.2957153320312 MULTI HCD FTMS 0 0 0 19492 8654423 0.37800803955061957 -3 0.0919189453125 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 179.2298980043202 1.129651853483471E-12 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 108.31 0 0 8.8304 8.8304 89.751 0 0 0 4.000313728876904 4.000313728876904 4.000313728876904 4.000313728876904 0 2.973197507588033 2 0.8737125054200234 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YDYA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}HW{M(Oxidation (M))|F};[Y{I|L}]YDAWH{I|L}{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}ADH{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};{I|L}YYDA[RP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.8304;8.5043;7.7697;7.5663;7.4318;6.7392;6.5861;6.3921;5.7848;5.7207 +;+;-;-;-;-;-;-;-;- + 10205 + NaN NaN 1069173.2 NaN 15759 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19494 80.102 NaN 5446100 35 0 838680 0.261 + 32271 VYTVVDEMFL 10 106 616.299301352522 1230.5840497718439 2 616.2993774414062 MULTI HCD FTMS 0 0 0 19492 3243168.25 0.7426007951575689 5 -0.14714813232421875 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 118.81 0 0 9.6548 9.6548 90.306 0 0 0 3.4948500216800937 16.53212513775344 3.4948500216800937 3.4948500216800937 0 2.2614393726401687 1.5228787452803376 2.885151878060192 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[YV]TVVDEYM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVVTM{I|L};[YT]VVVDEYM{I|L};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DVVTM{I|L};YYVEDVVTM{I|L};[YV]YEDV{I|L}SM{I|L} 9.6548;9.3708;9.349;8.5167;7.972;7.9569;7.6662;7.5527;7.1707;6.7773 -;+;-;-;-;-;-;-;-;- + 9845 NaN NaN 910230.1 NaN 15760 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19495 80.105 NaN 2641200 35 0 188530 0.261 + 17260 LYPLTNYTF 9 117 566.289701364897 1130.564849796594 2 566.2907104492188 MULTI HCD FTMS 0 0 0 19492 1010872 0.19159970568378293 8 -0.23072052001953125 3 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 163.03601447609117 7.615514112917802E-09 1 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 108.24 0 0 9.5742 9.5742 94.566 0 0 0 20.387310829771963 16.478174818886373 16.478174818886373 10.31234684152075 0 2.555462187404089 1.3979400086720375 0.9802046884880937 0.7302046884880937 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGTY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENTY{M(Oxidation (M))|F} 9.5742;8.662;8.1138;7.7709;7.4719;6.8587;6.3105;5.6686;4.4429;3.5308 +;-;-;-;-;-;-;-;-;- + 4966 NaN NaN 494259 NaN 15761 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19496 80.109 NaN 1692500 35 0 301100 0.261 + 23138 RFILNLPTF 9 101 560.8295653499299 1119.6445777666597 2 561.3339233398438 MULTI HCD FTMS 0 0 0 19492 344669.46875 0.07799190476632262 -6 0.1861419677734375 4 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 114.20165948288297 0.0022564706844261533 1 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 83.496 0 0 7.4574 7.4574 90.62 0 0 0 2.922152515121226 50.2738823421749 2.922152515121226 9.208187539523749 0 2.754432191740108 0 0.3054621874040891 0.8494850021680094 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}QKKPT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{I|L}N[R{I|L}]{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[AG]KKPT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{I|L}GG[R{I|L}]{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[KA][KG]PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[KA][EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}{I|L}N[R{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}{I|L}GG[R{I|L}]{M(Oxidation (M))|F} 7.4574;6.635;3.9901;3.5805;3.1677;2.7581;2.5843;2.4054;1.9058;1.0834 +;-;-;-;-;-;-;-;-;- + 1914 NaN NaN 339665.7 NaN 15762 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19497 80.112 NaN 502600 35 0 52313 0.261 + -1 ASSCNYYCFL 10 88 642.7548128767369 1283.4950728202737 2 642.7552490234375 MULTI HCD FTMS 0 0 0 19492 110378.5625 0.4687476692765461 6 -0.17530059814453125 5 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 4.897010918128616 0.4493830473644964 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 -1 18.02 0 0 1.404 0 0 858.2968617169937 0 858.2968617169937 0 -1.6452935963211246 -1.6452935963211246 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 1.404 - 102 NaN NaN 159578.9 NaN 15763 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19498 80.115 NaN 269710 35 0 28152 0.261 -1 RQGCTAFMVI 10 76 591.7928856887643 1181.5712184443285 2 591.7931518554688 MULTI HCD FTMS 0 0 0 19492 136249.734375 0.9873623040189574 1 -0.026214599609375 6 Carbamidomethyl (C) _RQGC(Carbamidomethyl (C))TAFMVI_ DOCK9|p.R1685M|1|0.26|ENSG00000088387|chr13:98824474-98824474|C/A|missense_variant 17.11289562659939 0.35104376501799556 1 {I|L}NV{I|L} 4 -1 47.295 0 0 4.0027 0 0 724.2824574201187 0 724.2824574201187 0 21.137444175349316 0 0 0 1.305462187404089 0 0 0.3807196863200844 {I|L}NV{I|L} 4.0027 - 277 NaN NaN 126111.8 NaN 15764 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19499 80.119 NaN 194140 35 0 24583 0.262 + 14170 LAIDSYSIF 9 61 514.7675410407911 1027.5205291483821 2 514.7677001953125 MULTI HCD FTMS 0 0 0 19492 95314.0234375 0.7890025537405625 -3 0.0919189453125 7 Unmodified _LAIDSYSIF_ REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF 28.486842064014134 0.11819662193267319 1 {I|L}ADEV{I|L} 6 -1 67.044 0 0 6.5249 0 0 0 384.15405367326684 384.15405367326684 33.54425638516595 0 0 0 0 1.6861818737241734 1.3010299956639813 0.3807196863200844 0 {I|L}ADEV{I|L} 6.5249 - 72 + NaN NaN 109270 NaN 15765 3732 19492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19501 80.123 NaN 2463100 35 0 182580 0.326 + 17261 LYPLTNYTF 9 109 566.289701364897 1130.564849796594 2 566.2884521484375 MULTI HCD FTMS 0 0 0 19500 718745.125 0.1362302590354207 9 -0.26680755615234375 1 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 174.72732175369546 1.2540765405420886E-09 1 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 107.09 0 0 9.4723 9.4723 94.445 0 0 0 13.273363600773862 13.273363600773862 13.273363600773862 10.227437154426738 0 2.1861818737241734 1.3979400086720375 1.2343545039429593 0.7302046884880937 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}[SG]AYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGTY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENYT{M(Oxidation (M))|F} 9.4723;8.5677;8.012;7.8625;7.3775;6.9578;6.4021;6.2314;5.7677;4.473 +;-;-;-;-;-;-;-;-;- + 5209 NaN NaN 449831.9 NaN 15766 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19502 80.128 NaN 1734600 35 0 189990 0.261 + -1 LYTNHSSCIF 10 115 621.2853467040056 1240.5561404748112 2 621.2844848632812 MULTI HCD FTMS 0 0 0 19500 738087.4375 0.43405619435592374 -2 0.05910491943359375 2 Carbamidomethyl (C) _LYTNHSSC(Carbamidomethyl (C))IF_ REV__ENSG00000115556|ENST00000450993|PLCD4;REV__ENST00000459791.5_1_2:219487363-219492999:+|nuORF;REV__ENST00000469493.5_1_2:219472784-219492999:+|nuORF;REV__ENST00000473443.5_1_2:219483577-219498591:+|nuORF 26.268140514670165 0.2654086933305545 1 {I|L}Y[DP]{I|L}ADY{I|L} 9 -1 88.68 0 0 7.1484 0 0 0 174.01937280826408 174.01937280826408 57.82448412286088 0 0 0 0 2.7302046884880937 1.6989700043360187 1.0565533887547016 0 {I|L}Y[DP]{I|L}ADY{I|L} 7.1484 - 8568 + NaN NaN 354469.5 NaN 15767 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19503 80.132 NaN 1439800 35 0 107440 0.261 + 13442 KYPENFFLL 9 121 585.8132425088911 1169.6119320845821 2 585.8140258789062 MULTI HCD FTMS 0 0 0 19500 531314.9375 0.002679905948689289 166 -4.345405578613281 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 43.981846655682396 0.04706587046877104 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 55.328 0 0 4.7304 4.7304 85.79 0 0 0 6.399699876253777 27.301011469482578 6.399699876253777 9.208187539523749 0 2.0994850021680094 0 0.3252574989159953 0.4247425010840047 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{[CP]|[EA]}[NG]{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[CP]|[EA]}[NG]{M(Oxidation (M))|F}{I|L}{I|L};[EP][YK]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.7304;3.9431;3.4126;2.6253;2.5106;1.8759;1.7233;1.4819;1.4043;1.0886 +;-;-;-;-;-;-;-;-;- + 2510 NaN NaN 305101 NaN 15768 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19504 80.135 NaN 1116000 35 0 86907 0.261 + 17188 LYMNSAFERE 10 107 630.2900597409882 1258.5655665487764 2 630.290283203125 MULTI HCD FTMS 0 0 0 19500 573284.5 0.46603442492567115 -2 0.05910491943359375 4 Unmodified _LYMNSAFERE_ REV__ENSG00000169840|ENST00000302945|GSX1 32.78568957990786 0.20801173326193015 1 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 -1 82.854 0 0 6.5832 0 0 0 299.1147037080901 299.1147037080901 59.912625530451855 0 0 0 0 2.254432191740108 1.6989700043360187 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.5832 - 3677 + NaN NaN 249350.2 NaN 15769 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19505 80.138 NaN 2368000 35 0 595110 0.261 + 23139 RFILNLPTF 9 105 560.8295653499299 1119.6445777666597 2 560.82958984375 MULTI HCD FTMS 0 0 0 19500 624379.4375 0.09022079789369981 -5 0.14768218994140625 5 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 149.91393105778798 8.917243180786556E-06 1 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 93.713 0 0 8.3699 8.3699 92.076 0 0 0 4.137342758552691 56.66152400576769 4.137342758552691 9.208187539523749 0 3.048455006504028 0 0.3252574989159953 1.1382104921644451 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[Y{I|L}][VP][RK]PT{M(Oxidation (M))|F};[TP]{I|L}{M(Oxidation (M))|F}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}GG{I|L}[R{I|L}]{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[KA][EP]{M(Oxidation (M))|F};[TP]{I|L}{M(Oxidation (M))|F}GG{I|L}[R{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[Y{I|L}][WK]{I|L}{I|L}{[RE]|[WV]} 8.3699;7.5475;4.3101;3.6665;3.5792;3.4877;3.3796;2.7568;2.5238;2.1013 +;-;-;-;-;-;-;-;-;- + 2279 NaN NaN 450368.3 NaN 15770 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19506 80.141 NaN 1022400 35 0 85154 0.264 + 21135 PPKGRGGR 8 100 412.7459692073516 823.4773854815032 2 412.7460632324219 MULTI HCD FTMS 0 0 0 19500 504748 0.2142810899319753 -5 0.14768218994140625 6 Unmodified _PPKGRGGR_ ENSG00000167615|ENST00000326764|LENG8;nc|ENSG00000167615|Q96PV6-1|LENG8 2.577480529830294 0.5381683276125971 1 HC(Carbamidomethyl (C)) 2 8 8.5835 0 0 1.0423 0 0 100.0970642304738 423.2723482721313 523.3694125026051 0 0 0 0 0 0 0 0 0 HC(Carbamidomethyl (C)) 1.0423 - 46 + NaN NaN 248024.9 NaN 15771 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19507 80.145 NaN 636050 35 0 71011 0.261 -1 YYMDYLAAL 9 76 569.75958373651 1137.5046145398198 2 569.7599487304688 MULTI HCD FTMS 0 0 0 19500 292481.53125 0.3719986931528443 14 -0.4043426513671875 7 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 28.486842064014134 0.11819662193267319 1 {I|L}AA{I|L} 4 -1 44.68 0 0 3.9279 0 0 751.254108175775 0 751.254108175775 0 18.60075241960977 0 0 0 1.4247425010840047 0 0 0 {I|L}AA{I|L} 3.9279 + + 301 NaN NaN 176714.9 NaN 15772 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19508 80.148 NaN 436970 35 0 49270 0.261 + 17408 LYQYSLQF 8 84 531.2676031254542 1060.5206533177084 2 531.2675170898438 MULTI HCD FTMS 0 0 0 19500 165345.625 0.44878288425443047 -2 0.05910491943359375 8 Unmodified _LYQYSLQF_ ENSG00000197102|ENST00000360184|DYNC1H1 42.09456458481378 0.20402248593209013 1 {I|L}YQG{[VA]|[{I|L}G]}[YT]{M(Oxidation (M))|F} 9 4 + 69.402 0 0 6.5441 6.5441 84.612 0 0 0 32.98332479720628 1.249387366082999 1.249387366082999 1.249387366082999 0 1.1989700043360187 2 0.8252574989159953 0.3807196863200844 {I|L}YQG{[VA]|[{I|L}G]}[YT]{M(Oxidation (M))|F};{I|L}YQG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[YT];{I|L}YQG[{M(Oxidation (M))|F}V]{[MG]|[TS]}{M(Oxidation (M))|F};{I|L}YQG[{M(Oxidation (M))|F}V]A[YT];{I|L}Y[AG]G{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[YT];{I|L}YQ[Y{I|L}]{[QS]|[NT]}{M(Oxidation (M))|F};{I|L}YQ{[TV]|[{I|L}S]}[YQ]{M(Oxidation (M))|F};[Y{I|L}]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SY{I|L};{I|L}Y[AG]G[{M(Oxidation (M))|F}V]A[YT];{I|L}Y[YN][KP][YT] 6.5441;6.4263;5.4808;5.363;5.199;5.1538;5.0716;4.5988;4.1357;4.0511 -;-;-;-;-;-;-;-;-;- 762 + NaN NaN 143951.9 NaN 15773 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19509 80.151 NaN 231830 35 0 19204 0.262 + 17352 LYQCRREEHQ 10 77 454.5503345983587 1360.629174395276 3 454.55096435546875 MULTI HCD FTMS 0 0 0 19500 92672.8515625 0.4076797014422059 3 -0.09174346923828125 9 Unmodified _LYQCRREEHQ_ REV__ENSG00000103148|ENST00000611875|NPRL3 11.517880264261096 0.4033776509493788 1 {I|L}Y 2 -1 41.766 0 0 3.0696 0 0 0 1081.4581653730952 1081.4581653730952 14.625984483110628 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 {I|L}Y 3.0696 + + 299 + NaN NaN 117047.9 NaN 15774 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19510 80.155 NaN 125870 35 0 35875 0.261 + -1 LFLLCLCG 8 47 469.7468152147769 937.4790774963539 2 469.7469787597656 MULTI HCD FTMS 0 0 0 19500 54424.96484375 0.3523390118094135 -2 0.05910491943359375 10 Carbamidomethyl (C) _LFLLC(Carbamidomethyl (C))LCG_ REV__ENST00000508607.1_1_17:47783523-47785148:-|nuORF 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98882.4 NaN 15775 3733 19500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19512 80.16 NaN 328720 35 0 12449 0.327 + 21358 PTKLNTRQ 8 74 479.2774935703601 956.5404342075202 2 479.2774353027344 MULTI HCD FTMS 0 0 0 19511 259783.921875 0.24334214484530942 50 -1.4263076782226562 1 Unmodified _PTKLNTRQ_ REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF 6.2057823575117 0.5327852213979698 1 QV 2 -1 12.703 0 0 1.328 0 0 458.27228953154207 268.12461267642817 726.3969022079702 0 0 0 0 0 0.7614393726401688 0 0 0 QV 1.328 - 115 + NaN NaN 139679.7 NaN 15776 3734 19511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19513 80.164 NaN 864590 35 0 306830 0.261 + 33707 YLAHWPEYF 9 73 409.19470879300286 1224.5622969792087 3 409.5298156738281 MULTI HCD FTMS 0 0 0 19511 192190.953125 0.5617083023562098 -1 0.03614044189453125 2 Unmodified _YLAHWPEYF_ ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 12.240655878213236 0.2545997876781172 1 Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V{I|L}[WH]H{M(Oxidation (M))|F} 9 8 + 40.34 0 0 3.2942 3.2942 88.011 0 0 0 20.647124887093824 13.428637390930263 13.428637390930263 30.211440694835822 0 0.9247425010840047 0 0 0 Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V{I|L}[WH]H{M(Oxidation (M))|F};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}R[WY]{M(Oxidation (M))|F} 3.2942;0.82711 -;- 98 + NaN NaN 213813.7 NaN 15777 3734 19511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19514 80.168 NaN 187870 35 0 8843.2 0.261 + 25633 SGRSKLGPLS 10 73 501.2905065387472 1000.5664601442944 2 501.2908630371094 MULTI HCD FTMS 0 0 0 19511 82551.5859375 0.05874770059743769 -26 0.7501678466796875 3 Unmodified _SGRSKLGPLS_ REV__ENSG00000169221|ENST00000409939|TBC1D10B;REV__ENST00000475650.1_1_16:30369267-30370181:-|nuORF;REV__nc|ENSG00000169221|Q4KMP7-2|TBC1D10B 5.731851221503515 0.44496410492002586 1 N 1 -1 6.9061 0 0 0.69022 0 0 414.24738163042565 469.2484224908813 883.495804121307 0 0 0 0 0 0.2302046884880938 0 0 0 N 0.69022 - 50 + NaN NaN 115643.8 NaN 15778 3734 19511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19515 80.171 NaN 465630 35 0 28350 0.261 -1 FPTVVIYVM 9 83 542.7910109985189 1083.5674690638377 2 542.7910766601562 MULTI HCD FTMS 0 0 0 19511 66308.8671875 0.11348750098277431 9 -0.26010894775390625 4 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 30.224811164608877 0.11021837014094292 1 YV{M(Oxidation (M))|F} 3 -1 40.005 0 0 3.692 0 0 656.3899946435271 0 656.3899946435271 0 19.547509540478032 0 0 0 1.3807196863200843 0 0 0 YV{M(Oxidation (M))|F} 3.692 + + 322 + NaN NaN 158270.2 NaN 15779 3734 19511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19516 80.174 NaN 271460 35 0 31171 0.261 + 24221 RYFLPPYTF 9 69 602.3135266082954 1202.6125002833908 2 602.314453125 MULTI HCD FTMS 0 0 0 19511 54112.015625 0.747195026940212 -1 0.03614044189453125 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 30.273 0 0 2.5173 0 0 579.3169607291757 0 579.3169607291757 0 18.706290716515923 0 0 0 0.805462187404089 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.5173 + + 93 NaN NaN 120660.3 NaN 15780 3734 19511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19517 80.178 NaN 300670 35 0 75499 0.261 + 17347 LYPWNLYGW 9 66 606.2990095347391 1210.583466136278 2 606.3004760742188 MULTI HCD FTMS 0 0 0 19511 68211.1015625 0.45401264888365467 49 -1.4034042358398438 6 Unmodified _LYPWNLYGW_ ENST00000256646.6_1_1:120502049-120502082:-|nuORF 8.593279151180031 0.2858735984551981 1 EE 2 9 6.5546 0 0 0.54144 0 0 148.18456683562414 801.3067006089954 949.4912674446196 0 0 0 0 0 0 0 0.4247425010840047 0 EE 0.54144 - 49 + NaN NaN 120872.8 NaN 15781 3734 19511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19519 80.182 NaN 1527700 35 0 112100 0.327 -1 LMEMEMLSLF 10 113 630.2900597409882 1258.5655665487764 2 630.2899780273438 MULTI HCD FTMS 0 0 0 19518 1230133.375 1 0 0 1 Oxidation (M) _LM(Oxidation (M))EMEMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 30.636539890814138 0.2266618088935899 1 {I|L}YY[DC]{I|L}W 7 -1 68.808 0 0 5.4672 0 0 0 299.114767314522 299.114767314522 43.16323066185247 0 0 0 0 1.5044321917401078 1.6989700043360187 0.9194451763165201 0 {I|L}YY[DC]{I|L}W 5.4672 - 4629 + NaN NaN 310600.5 NaN 15782 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19520 80.187 NaN 1542600 35 0 297400 0.263 + 14124 LADEVITVF 9 83 503.7763649290773 1005.5381769249547 2 503.7765197753906 MULTI HCD FTMS 0 0 0 19518 836247.25 0.9253000336719034 3 -0.09018707275390625 2 Unmodified _LADEVITVF_ ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 71.13359017698441 0.008721403657255008 1 V{I|L}TV{M(Oxidation (M))|F} 5 4 63.672 0 0 6.3321 0 0 428.191209861525 0 428.191209861525 0 39.7273429256591 0 0 0 2.305462187404089 0 0.805462187404089 0 + V{I|L}TV{M(Oxidation (M))|F} 6.3321 + + 221 NaN NaN 306982.8 NaN 15783 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19521 80.19 NaN 1788700 35 0 256340 0.261 + 32336 VYVGFQVQL 9 96 526.7921085815913 1051.5696642299824 2 526.7926635742188 MULTI HCD FTMS 0 0 0 19518 850838.75 0.3173980328783721 5 -0.14560699462890625 3 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 154.46347324262513 4.107785341423729E-06 1 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 98.074 0 0 9.3265 9.3265 93.282 0 0 0 17.191512336730028 63.664836659387284 17.191512336730028 9.208187539523749 0 2.774227503252014 1.154901959985743 0 1.0189301784845295 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QVAAV;[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]VG{M(Oxidation (M))|F}Q[Q{I|L}]V;[YV]VG{M(Oxidation (M))|F}[AG]VAAV;[YV]VG{M(Oxidation (M))|F}[AG][Q{I|L}]V;[YV]VG[KS]G{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V;[Q{I|L}]N{M(Oxidation (M))|F}G{I|L}[{M(Oxidation (M))|F}T]{I|L} 9.3265;8.4508;7.8439;7.5162;6.6103;6.145;6.0378;4.937;3.1448;1.5693 +;-;-;-;-;-;-;-;-;- + 1453 NaN NaN 352189.7 NaN 15784 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19522 80.194 NaN 504990 35 0 31858 0.261 + 20406 NYYFGVYLAI 10 94 611.8113338125005 1221.608114691801 2 611.8115234375 MULTI HCD FTMS 0 0 0 19518 244064.359375 0.7563428207634182 3 -0.09018707275390625 4 Unmodified _NYYFGVYLAI_ REV__ENSG00000103546|ENST00000568943|SLC6A2;REV__nc|ENSG00000103546|P23975-2|SLC6A2;REV__nc|ENSG00000103546|P23975-3|SLC6A2 14.838274106304384 0.3723198072575719 1 [YN]YDK{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 9 -1 + 60.318 0 0 4.9376 4.9376 90.87 0 0 0 21.80577499866147 49.82833726718405 21.80577499866147 47.880325230808154 0 1.3494850021680094 2 0 0.3054621874040891 [YN]YDK{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QP][R{M(Oxidation (M))|F}][RP]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.9376;1.0181 -;- 109 NaN NaN 158147.9 NaN 15785 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19523 80.197 NaN 861460 35 0 83325 0.261 + 4809 EYVFSVSTF 9 94 539.7578700390065 1077.501187144813 2 539.7597045898438 MULTI HCD FTMS 0 0 0 19518 127068.15625 0.42281803474689966 3 -0.09018707275390625 5 Unmodified _EYVFSVSTF_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 61.357469665136826 0.01568246967499496 1 VST{M(Oxidation (M))|F} 4 5 23.972 0 0 2.2248 0 0 625.2750721662125 0 625.2750721662125 0 10.019797293635547 0 0 0 0.805462187404089 0 0 0 + VST{M(Oxidation (M))|F} 2.2248 + + 769 NaN NaN 212762.8 NaN 15786 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19524 80.2 NaN 329790 35 0 13760 0.261 + -1 LYMTEGARADM 11 79 637.2793059866924 1272.5440590401847 2 637.2791748046875 MULTI HCD FTMS 0 0 0 19518 261127.171875 1 0 0 6 Oxidation (M) _LYM(Oxidation (M))TEGARADM_ REV__ENSG00000114346|ENST00000392692|ECT2;REV__nc|ENSG00000114346|Q9H8V3-2|ECT2;REV__nc|ENSG00000114346|Q9H8V3-3|ECT2;REV__nc|ENSG00000114346|Q9H8V3-4|ECT2 23.789781309258295 0.24980126723476595 1 [Y{I|L}][DP]{I|L}A{M(Oxidation (M))|F}YE 9 -1 47.475 0 0 3.7307 0 0 0 158.06014725723472 158.06014725723472 27.526042185661325 0 0 0 0 1.1382104921644451 2 0.3494850021680094 0 [Y{I|L}][DP]{I|L}A{M(Oxidation (M))|F}YE 3.7307 - 999 NaN NaN 130060 NaN 15787 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19525 80.204 NaN 1010700 35 0 538450 0.264 -1 0 75 421.2592844814241 840.5040160296483 2 421.25933837890625 MULTI HCD FTMS 0 0 0 19518 869497.3125 1 0 0 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5585 0 0 675.4250650792561 0 675.4250650792561 0 8.322646798160562 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5585 - 9 + NaN NaN 240918.8 NaN 15788 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19526 80.207 NaN 312180 35 0 65367 0.261 + 19887 NYEDYFPEI 9 75 595.2556213460393 1188.4966897588786 2 595.2559814453125 MULTI HCD FTMS 0 0 0 19518 193726.6875 0.8078610165886857 4 -0.11966705322265625 8 Unmodified _NYEDYFPEI_ ENSG00000185247|ENST00000355220|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;nc|ENSG00000185247|P43364-2|MAGEA11 34.40172386719151 0.0910440009062557 1 {M(Oxidation (M))|F}[EP]{I|L} 4 5 25.445 0 0 2.141 0 0 684.2394638818841 0 684.2394638818841 0 6.861818737241734 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}[EP]{I|L} 2.141 + + 38 NaN NaN 121698.2 NaN 15789 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19527 80.21 NaN 414110 35 0 76264 0.264 + 30737 VPKGKADD 8 82 415.2236747270888 828.4327965209776 2 415.2234802246094 MULTI HCD FTMS 0 0 0 19518 233123.921875 0.7151524537607702 -3 0.085113525390625 9 Unmodified _VPKGKADD_ CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;ENSG00000167670|ENST00000301280|CHAF1A;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 8 12.764 0 0 1.5408 0 0 663.3543033342573 0 663.3543033342573 0 2.6316963869492227 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5408 - 66 + NaN NaN 148036.9 NaN 15790 3735 19518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19529 80.215 NaN 2281300 35 0 640180 0.327 + 11469 IYQGGIFEL 9 79 520.2783276800297 1038.5421024268594 2 520.2767944335938 MULTI HCD FTMS 0 0 0 19528 934539.1875 0.489111094217845 1 -0.0291900634765625 1 Unmodified _IYQGGIFEL_ ENSG00000121858|ENST00000241261|TNFSF10 111.28704002717404 0.0027322905094575235 1 [Y{I|L}]QVQ{M(Oxidation (M))|F}E{I|L} 8 3 + 70.429 0 0 6.7815 6.7815 84.809 0 0 0 0.6953343647907957 16.40978057358332 0.6953343647907957 0.6953343647907957 0 1.5994850021680094 0.8538719643217619 0.28872548999643577 1.031234684152075 [Y{I|L}]QVQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KVQ{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QV[AG]{M(Oxidation (M))|F}E{I|L};[Y{I|L}][AG]VQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KV[AG]{M(Oxidation (M))|F}E{I|L};[YQ]{I|L}VQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}T][VG]VQ{M(Oxidation (M))|F}E{I|L} 6.7815;6.7145;6.3919;6.325;5.8896;5.8896;5.8227;5.5177;5.2934;5.1497 -;-;+;-;-;-;-;-;-;- + 1189 NaN NaN 421405.6 NaN 15791 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19530 80.22 NaN 1826900 35 0 137580 0.263 -1 0 108 404.2327122446908 806.4508715561816 2 404.23291015625 MULTI HCD FTMS 0 0 0 19528 1727745.625 0.7488586134887213 -2 0.05560302734375 2 NaN NaN 1 Q 1 -1 10.713 0 0 1.3285 0 0 308.1830244012744 367.1974698814157 675.38049428269 0 0 0 0 0 0.6109243748081782 0 0 0 Q 1.3285 - 75 + NaN NaN 358337.7 NaN 15792 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19531 80.223 NaN 2069300 35 0 166800 0.246 + 35912 YYTEFPTVL 9 107 566.781255054309 1131.5479571754179 2 566.7816162109375 MULTI HCD FTMS 0 0 0 19528 397246.15625 0.4704840221532314 1 -0.0291900634765625 3 Unmodified _YYTEFPTVL_ ENSG00000128708|ENST00000264108|HAT1;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1 88.90359156742426 0.00455469703666567 1 VEQTNYT{M(Oxidation (M))|F} 8 8 44.697 0 0 3.9501 0 0 131.09289867315823 0 131.09289867315823 0 5.275121856795025 0 0 0 0.28872548999643577 0 1.0838395061109687 0.2614393726401688 VEQTNYT{M(Oxidation (M))|F} 3.9501 - 2922 + NaN NaN 362431.2 NaN 15793 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19532 80.226 NaN 250970 35 0 27695 0.261 + 20928 PLAFLVIMA 9 66 487.79078151675463 973.5670101003093 2 487.7906799316406 MULTI HCD FTMS 0 0 0 19528 143274.96875 0.2308385299034343 52 -1.4889678955078125 4 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 2.302733041254933 0.33356062215410776 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.3455 0 0 808.4875250923 0 808.4875250923 0 7.614393726401687 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3455 + + 41 + NaN NaN 124880 NaN 15794 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19533 80.23 NaN 734670 35 0 176470 0.261 + 17305 LYPQFMFHL 9 90 598.3019807680839 1194.5894086029678 2 598.3024291992188 MULTI HCD FTMS 0 0 0 19528 142626.75 0.05208546549409921 23 -0.6437835693359375 5 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 44.40701690623563 0.04511410083598184 1 [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}[H{I|L}] 9 0 + 32.571 0 0 2.7265 2.7265 79.182 0 0 0 0.6555280207258143 0.6555280207258143 0.6555280207258143 0.6555280207258143 0 1.5 1.6989700043360187 0 0 + + [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]S{[RE]|[WV]}M{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]S{[RE]|[WV]}MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[Y{I|L}][QP]{I|L}[C(Carbamidomethyl (C))R][{M(Oxidation (M))|F}V];[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[H{I|L}];[YT]V{[RE]|[WV]}M{M(Oxidation (M))|F}[H{I|L}];{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V[TP]M{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YT]V{[RE]|[WV]}MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V[TP]MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.7265;2.6716;2.3758;1.6609;1.5393;1.4543;1.3777;1.2434;1.1584;1.0818 +;-;-;-;-;-;-;-;-;- + 1846 + NaN NaN 192698.8 NaN 15795 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19534 80.233 NaN 277910 35 0 61079 0.262 + 25610 SGEVFAGLVL 10 40 496.27639263729594 990.5382323413919 2 496.2767639160156 MULTI HCD FTMS 0 0 0 19528 90925.5 0.3147499273870199 1 -0.0291900634765625 6 Unmodified _SGEVFAGLVL_ REV__ENSG00000160339|ENST00000291744|FCN2;REV__nc|ENSG00000160339|Q15485-2|FCN2 30.636539890814138 0.2266618088935899 1 {M(Oxidation (M))|F}Q{I|L}V{I|L} 5 -1 48.443 0 0 4.8906 0 0 372.1640797345719 0 372.1640797345719 0 38.777587793350534 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}Q{I|L}V{I|L} 4.8906 - 76 NaN NaN 125318.4 NaN 15796 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19535 80.236 NaN 712270 35 0 69622 0.261 + 3365 EEQLMCDEHF 10 92 427.5025870631683 1279.4859317897049 3 427.5028381347656 MULTI HCD FTMS 0 0 0 19528 55138.2265625 0.20998686587783386 1 -0.0291900634765625 7 Unmodified _EEQLMCDEHF_ REV__ENSG00000170160|ENST00000399273|CCDC144A;REV__ENST00000328495.9_1_17:16623938-16667555:+|nuORF;REV__ENST00000470068.2_1_17:16635099-16667555:+|nuORF;REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A;REV__nc|ENSG00000266302|A2RUR9-3|CCDC144A;REV__nc|ENSG00000266302|A2RUR9|CCDC144A 6.723162845929126 0.4397169348982109 1 E{M(Oxidation (M))|F}Y 3 -1 31.114 0 0 2.4318 0 0 0 837.2567232721311 837.2567232721311 18.015384402724592 0 0 0 0 0.8807196863200843 0 0 0 E{M(Oxidation (M))|F}Y 2.4318 - 92 + NaN NaN 191680.5 NaN 15797 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19536 80.24 NaN 288420 35 0 22046 0.261 -1 IYKDDECVL 9 70 577.7718456874577 1153.5291384417153 2 577.7722778320312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _IYKDDEC(Carbamidomethyl (C))VL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 15.847184025352803 0.2234401846867398 1 YYTE{M(Oxidation (M))|F} 5 -1 40.916 0 0 3.5471 0 0 0 447.22260461978755 447.22260461978755 21.575469983962297 0 0 0 0 0.6747425010840047 2 0.4247425010840047 0 YYTE{M(Oxidation (M))|F} 3.5471 - 126 + NaN NaN 125578.6 NaN 15798 3736 19528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19538 80.244 NaN 16163000 35 0 3546900 0.327 + 17606 LYYDAIWHF 9 94 614.2951260546212 1226.5756991760422 2 614.2957153320312 MULTI HCD FTMS 0 0 0 19537 12807226 0.5593942418046499 2 -0.0576324462890625 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 146.00731375242447 1.3047045798573153E-05 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 97.718 0 0 7.9668 7.9668 88.76 0 0 0 4.8649408280835615 4.8649408280835615 4.8649408280835615 4.8649408280835615 0 2.4247425010840047 2 1.2658715643802765 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAWH{I|L}{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]ADYW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]A{I|L}DYWH{M(Oxidation (M))|F};[Y{I|L}]YW{[DA]|[EG]}{I|L}H{M(Oxidation (M))|F} 7.9668;7.5701;6.9498;6.4543;6.1449;5.9635;5.7419;5.4373;5.4154;5.0098 +;+;-;-;-;-;-;-;-;- + 4338 NaN NaN 501419.6 NaN 15799 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19539 80.249 NaN 5124000 35 0 374370 0.188 + 27663 TALNLFFKL 9 94 533.8184314102489 1065.6223098872977 2 533.818603515625 MULTI HCD FTMS 0 0 0 19537 2067538.375 0.37984215118759784 2 -0.0576324462890625 2 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 193.2943466776899 1.661812519250559E-13 1 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 129.76 0 0 12.177 12.177 97.187 0 0 0 28.066884185923655 16.478174818886373 16.478174818886373 18.322646798160562 0 2.579689690656103 1.6989700043360187 1.9534021960761265 1.9361818737241734 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}AT{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}AT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[TA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 12.177;10.458;9.8536;9.5435;9.22;8.6104;8.5327;7.8241;7.7649;7.7463 +;-;-;-;-;+;-;-;-;- + 2501 NaN NaN 484630 NaN 15800 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19540 80.251 NaN 440850 35 0 134580 0.261 + 25268 SAVELVVAL 9 43 450.77332468417364 899.5320964351473 2 450.7734680175781 MULTI HCD FTMS 0 0 0 19537 206091.453125 0.16019014770303472 2 -0.0576324462890625 3 Unmodified _SAVELVVAL_ KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant 67.34385681178166 0.00994769994983633 1 {[VA]|[{I|L}G]}SE{I|L}VVA{I|L} 9 2 + 85.551 0 0 9.5106 9.5106 97.097 0 0 0 26.20384018084792 16.478174818886373 16.478174818886373 26.20384018084792 0 2.517220322351953 1.6989700043360187 0.8494850021680094 0 {[VA]|[{I|L}G]}SE{I|L}VVA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}VVA{I|L} 9.5106;6.5976 -;- 45 NaN NaN 141762.8 NaN 15801 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19541 80.254 NaN 718500 35 0 46075 0.261 -1 YLAMLEEVN 9 101 549.2619172231418 1096.5092815130836 2 549.2627563476562 MULTI HCD FTMS 0 0 0 19537 145105.84375 0.8289034519532232 2 -0.0576324462890625 4 Oxidation (M) _YLAM(Oxidation (M))LEEVN_ ENSG00000175305|ENST00000308108|CCNE2;nc|ENSG00000175305|O96020-2|CCNE2 26.88365393820708 0.12808753336095696 1 [Y{I|L}]A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F} 10 -1 + 55.335 0 0 5.0464 5.0464 88.495 0 0 0 23.66460270953162 6.561734207603749 6.561734207603749 14.259687322722812 0 1.1861818737241734 2 0.3807196863200844 0 [Y{I|L}]A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F};E{M(Oxidation (M))|F}A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F};[Y{I|L}]A[W{I|L}]EE{[CA]|SS};{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}[HM]N{I|L}N;[Y{I|L}]A[W{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}[PG];{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F};[Y{I|L}]A{[DA]|[EG]}{[ES]|[DT]|[{I|L}C]}C{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}VQ[HM]N{I|L}N;{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F}E{[CA]|SS};E{M(Oxidation (M))|F}AC[W{I|L}]C{I|L}{I|L} 5.0464;3.746;2.8355;2.3346;1.5412;1.4836;1.4566;1.2831;1.2812;0.99591 -;-;-;-;-;-;-;-;-;- 751 + NaN NaN 194043.6 NaN 15802 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19542 80.258 NaN 978190 35 0 97433 0.261 + 1626 AYYGNINFF 9 105 554.7584968269877 1107.5024407207752 2 554.7581176757812 MULTI HCD FTMS 0 0 0 19537 225218.578125 0.7930081538949747 -1 0.0291900634765625 5 Unmodified _AYYGNINFF_ ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 154.46347324262513 4.107785341423729E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 77.954 0 0 7.0387 7.0387 89.846 0 0 0 17.682467295597846 49.749774129711426 17.682467295597846 9.208187539523749 0 2.5924778212679485 1.3010299956639813 0.3054621874040891 1.1861818737241734 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}{M(Oxidation (M))|F}N{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}{[CA]|SS}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F};[YV]YQQN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]YQQGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]YQQ{M(Oxidation (M))|F}N{M(Oxidation (M))|F};[Y{I|L}]Y[RD][MT]{M(Oxidation (M))|F};[YV]YP{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.0387;6.2073;5.6803;5.0492;4.8489;4.7612;3.9249;3.4028;3.1522;3.0837 +;-;-;-;-;-;-;-;-;- + 1735 NaN NaN 229272.6 NaN 15803 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19543 80.261 NaN 259040 35 0 27750 0.261 + -1 AEFEYLVQM 9 64 573.2616551029689 NaN 0 573.2813110351562 PEAK HCD FTMS 0 0 0 19537 15449.8408203125 0.4257246203265149 4 -0.11301422119140625 6 Oxidation (M) _AEFEYLVQM(Oxidation (M))_ REV__ENSG00000198758|ENST00000361965|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-3|EPS8L3 14.838274106304384 0.2220448417561729 1 {I|L}N{I|L}[C(Carbamidomethyl (C))S]N{I|L} 7 -1 31.273 0 0 2.7324 0 0 165.0380051616914 162.0560701959594 327.0940753576508 0 0 0 0 0 0 0 0.3252574989159953 0.805462187404089 {I|L}N{I|L}[C(Carbamidomethyl (C))S]N{I|L} 2.7324 - 176 + NaN NaN 111816.3 NaN 15804 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19544 80.264 NaN 355010 35 0 104820 0.261 + 32397 VYWTQLNMF 9 82 609.2866914479455 1216.5588299626909 2 609.286865234375 MULTI HCD FTMS 0 0 0 19537 62960.7421875 0.3547633700291595 2 -0.0576324462890625 7 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 67.83816525789305 0.009787749748478139 1 [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 48.751 0 0 4.0073 4.0073 83.358 0 0 0 31.276903016220103 7.384381005764311 7.384381005764311 7.825834421237516 0 2.4916440611282624 0 0 0.2742275032520141 + + [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}C(Carbamidomethyl (C))T{M(Oxidation (M))|F};[YV]WTQ{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YV]WTQ{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}Q{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YV]WTAAVN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}[CG]T{M(Oxidation (M))|F};[YV]WT[AG]{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YV]WT[AG]{I|L}C(Carbamidomethyl (C))T{M(Oxidation (M))|F} 4.0073;3.364;3.2855;3.2504;3.2504;3.1726;2.6538;2.6071;2.5286;2.3817 +;-;-;-;-;-;-;-;-;- + 1070 + NaN NaN 136152.9 NaN 15805 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19545 80.268 NaN 148440 35 0 13574 0.261 -1 LAKMCFLMIF 10 64 624.812374308596 1247.6101956839918 2 624.8125 MULTI HCD FTMS 0 0 0 19537 38784.3359375 0.32313009520774494 2 -0.0576324462890625 8 2 Oxidation (M) _LAKM(Oxidation (M))CFLM(Oxidation (M))IF_ ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3 6.723162845929126 0.4397169348982109 1 {M(Oxidation (M))|F}EDVV{[QS]|[NT]}{M(Oxidation (M))|F} 8 -1 26.636 0 0 2.135 0 0 278.16182143379064 0 278.16182143379064 0 15.666922180729372 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}EDVV{[QS]|[NT]}{M(Oxidation (M))|F} 2.135 - 175 NaN NaN 101104.3 NaN 15806 3737 19537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19547 80.273 NaN 1610300 35 0 182830 0.327 + 16707 LYADMSVWWA 10 115 621.2853467040056 1240.5561404748112 2 621.2847290039062 MULTI HCD FTMS 0 0 0 19546 983183.5625 0.5781928993907981 3 -0.08486175537109375 1 Unmodified _LYADMSVWWA_ REV__nc|ENSG00000290724|O14609|XKRY 36.12702656103203 0.1790159924230938 1 {I|L}Y[DP]{I|L}ADY 8 -1 81.878 0 0 6.6001 0 0 0 287.1037065107907 287.1037065107907 59.79995346516773 0 0 0 0 2.805462187404089 1.6989700043360187 0.9489700043360187 0 {I|L}Y[DP]{I|L}ADY 6.6001 - 4768 + NaN NaN 332471.9 NaN 15807 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19548 80.277 NaN 1093800 35 0 100670 0.261 + 13443 KYPENFFLL 9 109 585.8132425088911 1169.6119320845821 2 585.8141479492188 MULTI HCD FTMS 0 0 0 19546 567066.0625 0.0028602314878330747 171 -4.373321533203125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 55.442 0 0 4.7402 4.7402 85.807 0 0 0 2.662574822053543 27.399546149178626 2.662574822053543 9.208187539523749 0 2.1479400086720375 0 0 0.809894379144197 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DYK{I|L};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[SG]{M(Oxidation (M))|F}{I|L}{I|L} 4.7402;3.9529;3.5902;2.8029;2.6349;2.6212;1.8339;1.4849;1.2727;1.161 +;-;-;-;-;-;-;-;-;- + 2199 NaN NaN 249901.2 NaN 15808 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19549 80.281 NaN 1803000 35 0 153250 0.261 + 17262 LYPLTNYTF 9 112 566.289701364897 1130.564849796594 2 566.2976684570312 MULTI HCD FTMS 0 0 0 19546 194468.75 0.036859419654212563 14 -0.3863677978515625 3 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 131.26759243768294 0.0005280990274065272 1 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 79.232 0 0 7.0082 7.0082 88.495 0 0 0 17.772336398233996 48.729450795118666 17.772336398233996 8.015384402724578 0 1.5044321917401078 1.3010299956639813 0.9581706663129559 0.5554621874040891 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENYT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}P]YT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}T{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}Q;[YK]PS[DV]{I|L}Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENTY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}P]TY{M(Oxidation (M))|F} 7.0082;6.2992;5.7024;5.197;3.5451;3.2858;3.0737;3.0338;2.8361;2.5768 +;-;-;-;-;-;-;-;-;- + 4126 NaN NaN 362357.3 NaN 15809 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19550 80.284 NaN 1658000 35 0 213120 0.261 + 31669 VYKDLLVLF 9 100 555.334214269282 1108.653875605364 2 555.334228515625 MULTI HCD FTMS 0 0 0 19546 609121.625 0.5259842290208252 -3 0.09018707275390625 4 Unmodified _VYKDLLVLF_ ENSG00000037637|ENST00000375592|FBXO42 72.96794272382148 0.008127836904478181 1 VYK{I|L}D{I|L}V{I|L}{M(Oxidation (M))|F} 9 2 + 92.476 0 0 8.3413 8.3413 94.256 0 0 0 14.732179175102104 14.732179175102104 14.732179175102104 14.732179175102104 0 2.7376954943324545 1.6989700043360187 0.3494850021680094 0 VYK{I|L}D{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{I|L}D{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{I|L}VEV{I|L}{M(Oxidation (M))|F};[YV]K{I|L}D{I|L}V{M(Oxidation (M))|F}{I|L};[YV]K{I|L}D{I|L}{I|L}V{M(Oxidation (M))|F};[YV]K{I|L}EVV{I|L}{M(Oxidation (M))|F};[{I|L}V][YK]D{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}V]{I|L}DKYV{I|L}{M(Oxidation (M))|F};[{I|L}V]EVKYV{I|L}{M(Oxidation (M))|F};[{I|L}V]EKVYV{I|L}{M(Oxidation (M))|F} 8.3413;7.0124;6.0184;5.931;5.8953;5.7469;5.5657;5.4897;5.4897;5.3308 -;-;-;-;-;-;-;-;-;- 2027 + NaN NaN 340154.3 NaN 15810 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19551 80.287 NaN 510440 35 0 27973 0.261 -1 0 86 509.8036971120352 1017.5928412908704 2 509.8038635253906 MULTI HCD FTMS 0 0 0 19546 278620.65625 0.3301356895129852 -26 0.7516555786132812 5 NaN NaN 1 D 1 -1 10.995 0 0 1.0805 0 0 61.05252728900877 838.4680880182249 899.5206153072337 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 1.0805 - 36 + NaN NaN 158363.7 NaN 15811 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19552 80.291 NaN 1504800 35 0 270250 0.261 + 11081 IYGYTFYSI 9 97 563.7756219205577 1125.5366909079153 2 563.7579956054688 MULTI HCD FTMS 0 0 0 19546 13410.328125 0.08012629964919461 -2 0.057342529296875 6 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 61.357469665136826 0.01568246967499496 1 [Y{I|L}]STA{M(Oxidation (M))|F}DY 8 6 53.383 0 0 4.7429 0 0 0 162.09084296225186 162.09084296225186 6.778259348524358 0 0 0 0 0 1.3010299956639813 1.9049471895720984 0 [Y{I|L}]STA{M(Oxidation (M))|F}DY 4.7429 - 1823 NaN NaN 309845 NaN 15812 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19553 80.294 NaN 337380 35 0 39530 0.261 + -1 ASSCNYYCFL 10 82 642.7548128767369 1283.4950728202737 2 642.7556762695312 MULTI HCD FTMS 0 0 0 19546 85257.21875 0.3620641696440207 12 -0.3438262939453125 7 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 4.897010918128616 0.4493830473644964 1 E{I|L}{[MG]|[TS]}S[VP]{M(Oxidation (M))|F}{I|L} 9 -1 16.946 0 0 1.3203 0 0 291.97824659193276 0 291.97824659193276 0 3.846974825220716 0 0 0 0.9291746928241126 0 0.3807196863200844 0 E{I|L}{[MG]|[TS]}S[VP]{M(Oxidation (M))|F}{I|L} 1.3203 - 121 + NaN NaN 138018.3 NaN 15813 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19554 80.297 NaN 165280 35 0 5336.1 0.262 + 274 AFLNKPDKL 9 74 523.3037906164145 NaN 0 523.3040161132812 PEAK HCD FTMS 0 0 0 19546 132957.171875 0.2299480536971949 -19 0.5417251586914062 8 Unmodified _AFLNKPDKL_ REV__tr|U7SUL7|U7SUL7_FUSNUD-methioninetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01219PE=3SV=1 7.289230182591677 0.2599242500475609 1 Q 1 -1 6.9897 0 0 0.66913 0 0 678.396725052393 235.11838709049064 913.5151121428836 0 0 0 0 0 0 0 0 0 Q 0.66913 - 29 + NaN NaN 97909.8 NaN 15814 3738 19546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19556 80.302 NaN 7291900 35 0 2040800 0.327 + 23140 RFILNLPTF 9 84 560.8295653499299 1119.6445777666597 2 560.830078125 MULTI HCD FTMS 0 0 0 19555 5894378.5 0.8517185214919405 1 -0.02593994140625 1 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 163.03601447609117 7.615514112917802E-09 1 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 98.083 0 0 8.7602 8.7602 89.332 0 0 0 3.425230508543038 4.36969709554505 3.425230508543038 3.425230508543038 0 3.1237125054200234 0 0.3494850021680094 1.1747425010840047 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}GG{I|L}PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[TP]{I|L}{M(Oxidation (M))|F}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}GG{I|L}[R{I|L}]{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[KA][EP]{M(Oxidation (M))|F};[TP]{I|L}{M(Oxidation (M))|F}GG{I|L}[R{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F} 8.7602;8.4543;7.9378;7.6319;4.7001;3.9563;3.8777;3.4685;3.1339;2.9464 +;-;-;-;-;-;-;-;-;- + 828 NaN NaN 476884.7 NaN 15815 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19557 80.306 NaN 1791500 35 0 121790 0.246 + 20755 PGKGPGRR 8 109 412.7459692073516 823.4773854815032 2 412.7463684082031 MULTI HCD FTMS 0 0 0 19555 2154232.75 0.9145382282587676 1 -0.02593994140625 2 Unmodified _PGKGPGRR_ REV__ENSG00000113905|ENST00000232003|HRG 5.230669730166228 0.5342319408533849 1 A 1 -1 8.0989 0 0 0.98351 0 0 61.052588239362144 688.3784211841249 749.4310094234871 0 0 0 0 0 0.5 0 0 0 A 0.98351 - 64 + NaN NaN 323108.7 NaN 15816 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19558 80.31 NaN 589510 35 0 42476 0.261 + 17189 LYMNSAFERE 10 97 630.2900597409882 1258.5655665487764 2 630.2905883789062 MULTI HCD FTMS 0 0 0 19555 509781.6875 0.41441171978607605 4 -0.11768341064453125 3 Unmodified _LYMNSAFERE_ REV__ENSG00000169840|ENST00000302945|GSX1 26.268140514670165 0.2654086933305545 1 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 -1 79.711 0 0 6.3335 0 0 0 299.11469446353755 299.11469446353755 58.01874718769181 0 0 0 0 1.860924374808178 2 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.3335 - 1421 + NaN NaN 170494.5 NaN 15817 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19559 80.313 NaN 444430 35 0 17947 0.264 -1 0 86 479.2774935703601 956.5404342075202 2 479.2776794433594 MULTI HCD FTMS 0 0 0 19555 263071.59375 0.24642173930148614 55 -1.5897293090820312 4 NaN NaN 1 [TP]K 3 -1 15.159 0 0 1.5848 0 0 0 627.323372604529 627.323372604529 2.6150382890994113 0 0 0 0 0.4247425010840047 0.8860566476931632 0 0 [TP]K 1.5848 - 108 NaN NaN 146041.7 NaN 15818 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19560 80.317 NaN 1228000 35 0 125980 0.261 + 29135 TYIKFINLF 9 95 579.8315935249233 1157.6486341166465 2 579.83203125 MULTI HCD FTMS 0 0 0 19555 483039.125 0.566157442166039 -2 0.0576324462890625 5 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 103.41943736471063 0.004016698775839292 1 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 104.63 0 0 9.0384 9.0384 88.14 0 0 0 7.768024924119672 7.768024924119672 7.768024924119672 0.1278813061184536 0 2.1989700043360187 1.6989700043360187 0.75 0.6549471895720984 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[K{I|L}]Y{M(Oxidation (M))|F}T{I|L}N{I|L}{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]KK[VP]Y{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F} 9.0384;9.0273;8.243;8.2319;5.756;5.6956;5.2173;4.9606;4.869;4.8549 +;-;-;-;-;-;-;-;-;- + 943 NaN NaN 274078.2 NaN 15819 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19561 80.32 NaN 510460 35 0 57113 0.261 -1 YYMDYLAAL 9 70 569.75958373651 1137.5046145398198 2 569.7603759765625 MULTI HCD FTMS 0 0 0 19555 231615.5 0.29458497070126577 20 -0.5569610595703125 6 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 21.74664581756881 0.17247014374749275 1 {I|L}AA{I|L} 4 -1 44.68 0 0 3.9279 0 0 751.2522532714171 0 751.2522532714171 0 34.75895023531386 0 0 0 1.4247425010840047 0 0 0 {I|L}AA{I|L} 3.9279 + + 230 NaN NaN 168981.8 NaN 15820 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19562 80.323 NaN 587320 35 0 37791 0.261 + -1 SFIQHRYM 8 101 549.2619172231418 1096.5092815130836 2 549.271240234375 MULTI HCD FTMS 0 0 0 19555 78719.78125 0.44967932874948474 4 -0.11768341064453125 7 Oxidation (M) _SFIQHRYM(Oxidation (M))_ REV__DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;REV__ENSG00000137628|ENST00000393743|DDX60 23.1484247019978 0.4234759064137959 1 [Y{I|L}]A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F} 10 -1 + 51.7 0 0 4.7149 4.7149 81.07 0 0 0 14.929155219028942 2.737642882298914 2.737642882298914 0.47991791481905466 0 1.1549471895720984 2 0.3494850021680094 0 [Y{I|L}]A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F};[Y{I|L}]AW{I|L}G{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};[Y{I|L}]AW{I|L}ES{[ES]|[DT]|[{I|L}C]};[Y{I|L}]A{[DA]|[EG]}{I|L}G{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};[Y{I|L}]A{[DA]|[EG]}{I|L}ES{[ES]|[DT]|[{I|L}C]};[Y{I|L}]AW{I|L}[WD]M;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}W{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}W{I|L}E[VG]{M(Oxidation (M))|F};[Y{I|L}]AW{I|L}C[TP]M;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}W{I|L}[WD]M 4.7149;4.6712;4.4653;3.8314;3.6255;2.783;2.752;2.6096;2.4397;1.8826 -;-;-;-;-;-;-;-;-;- 929 + NaN NaN 168377.9 NaN 15821 3739 19555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19564 80.328 NaN 423820 35 0 39817 0.327 -1 LMEMEMLSLF 10 80 630.2900597409882 1258.5655665487764 2 630.2904052734375 MULTI HCD FTMS 0 0 0 19563 293078.34375 0.23824924167267636 5 -0.14412689208984375 1 Oxidation (M) _LM(Oxidation (M))EMEMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 18.1463463914782 0.3413772152514074 1 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 -1 75.583 0 0 6.0055 0 0 0 299.1146334283813 299.1146334283813 54.43627449982179 0 0 0 0 1.7491348669726232 2 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.0055 - 873 + NaN NaN 145278 NaN 15822 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19565 80.332 NaN 756680 35 0 40797 0.263 + 14838 LKEQKERA 8 99 501.2905065387472 1000.5664601442944 2 501.2909851074219 MULTI HCD FTMS 0 0 0 19563 604229.9375 0.429999242984059 -20 0.5774307250976562 2 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 1 {M(Oxidation (M))|F} 1 8 10.596 0 0 1.059 0 0 835.4877991108945 0 835.4877991108945 0 2.8536570060759026 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.059 - 78 + NaN NaN 201186.6 NaN 15823 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19566 80.336 NaN 1484700 35 0 141700 0.261 -1 0 104 566.2978883914894 1130.5812238497788 2 566.2994384765625 MULTI HCD FTMS 0 0 0 19563 269216.5 0.5653223824583887 1 -0.02944183349609375 3 NaN NaN 1 [Y{I|L}]P{I|L}TNYT 8 -1 53.923 0 0 4.7695 0 0 0 162.0585296462148 162.0585296462148 21.306423891230402 0 0 0 0 0.8807196863200843 1.3010299956639813 0.6989700043360187 0.8283409326844267 [Y{I|L}]P{I|L}TNYT 4.7695 - 3088 NaN NaN 309501.3 NaN 15824 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19567 80.339 NaN 825540 35 0 117590 0.261 + 32337 VYVGFQVQL 9 74 526.7921085815913 1051.5696642299824 2 526.7929077148438 MULTI HCD FTMS 0 0 0 19563 40385.41796875 0.015065430694420196 10 -0.2884063720703125 4 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 112.59319219568356 0.00251905749371435 1 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 92.049 0 0 8.7535 8.7535 92.639 0 0 0 4.745462655597095 4.745462655597095 4.745462655597095 9.208187539523749 0 2.774227503252014 1.2218487496163564 0 0.3494850021680094 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]V{M(Oxidation (M))|F}GQVQ{I|L};[YV]V{M(Oxidation (M))|F}G[AG]VQ{I|L};[YV]V{M(Oxidation (M))|F}GQV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]VG{M(Oxidation (M))|F}{[VA]|[{I|L}G]}GQ{I|L};[YV]V{M(Oxidation (M))|F}G[AG]V[AG]{I|L} 8.7535;7.8779;7.8779;7.6096;6.7339;6.7339;6.674;6.0256;5.5301 +;-;-;-;-;-;-;-;- + 499 NaN NaN 211770.5 NaN 15825 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19568 80.343 NaN 468590 35 0 56410 0.261 + 14125 LADEVITVF 9 67 503.7763649290773 1005.5381769249547 2 503.7769470214844 MULTI HCD FTMS 0 0 0 19563 83655.5234375 0.09256408156027952 8 -0.2326812744140625 5 Unmodified _LADEVITVF_ ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 32.30548876998284 0.10066689432505688 1 {[TV]|[{I|L}S]}{[{M(Oxidation (M))|F}H]|[RQ]}RTV{M(Oxidation (M))|F} 8 5 + 54.759 0 0 5.4458 5.4458 91.071 0 0 0 1.1709124234504031 40.32226753704853 1.1709124234504031 32.64620513527822 0 1.2887254899964358 1.5228787452803376 0.4247425010840047 0 {[TV]|[{I|L}S]}{[{M(Oxidation (M))|F}H]|[RQ]}RTV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[{M(Oxidation (M))|F}H]|[RQ]}R{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 5.4458;2.1991 -;- 104 NaN NaN 153454.1 NaN 15826 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19569 80.346 NaN 198710 35 0 62374 0.261 + 20640 PFFKQLIV 8 30 496.3045059949083 NaN 0 496.30450439453125 PEAK HCD FTMS 0 0 0 19563 19742.494140625 0.1369685005526352 -1 0.02593994140625 6 Unmodified _PFFKQLIV_ ENSG00000188611|ENST00000682911|ASAH2;ENSG00000204147|ENST00000647317|ASAH2B;nc|ENSG00000188611|Q9NR71-2|ASAH2 2.577480529830294 0.38822285293237185 1 V{M(Oxidation (M))|F} 2 7 10.969 0 0 1.1073 0 0 131.1513568311662 610.2915097157224 741.4428665468886 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.1073 - 8 + NaN NaN 113685.5 NaN 15827 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19570 80.349 NaN 355880 35 0 74899 0.261 -1 LCWCSLYF 8 74 574.7495788885377 1147.4846048438753 2 574.7500610351562 MULTI HCD FTMS 0 0 0 19563 99859.6875 0.22040787779640542 -2 0.055419921875 7 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SLYF_ ENST00000417811.2_3_7:32763128-32763203:-|nuORF 34.18733598223924 0.30560024141787767 1 {I|L}YSTA{M(Oxidation (M))|F}DY 8 -1 84.819 0 0 7.3917 0 0 0 184.03928552799064 184.03928552799064 52.51139416000356 0 0 0 0 1.079689690656103 2 0.7302046884880937 0 {I|L}YSTA{M(Oxidation (M))|F}DY 7.3917 - 279 + NaN NaN 138876.3 NaN 15828 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19571 80.353 NaN 388720 35 0 26242 0.261 + 29320 TYNMVLNLL 9 87 548.7895098853706 NaN 0 548.7901000976562 PEAK HCD FTMS 0 0 0 19563 39273.25 0.19908390077994373 5 -0.14412689208984375 8 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 53.832793166522166 0.036978982887966305 1 {I|L}N{I|L} 3 6 33.689 0 0 3.0751 0 0 131.09568448358908 621.2378312515298 752.3335157351189 0 0 0 0 0 1.305462187404089 0 0 0.5941876774005248 + {I|L}N{I|L} 3.0751 + + 338 + NaN NaN 140373.5 NaN 15829 3740 19563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19573 80.357 NaN 1381500 35 0 105620 0.327 -1 0 109 404.2327122446908 806.4508715561816 2 404.23309326171875 MULTI HCD FTMS 0 0 0 19572 1255612.625 0.5442215079759983 3 -0.08514404296875 1 NaN NaN 1 Q 1 -1 10.841 0 0 1.3443 0 0 308.1831828746881 367.19688271077183 675.38006558546 0 0 0 0 0 0.6237125054200234 0 0 0 Q 1.3443 - 72 + NaN NaN 292005.2 NaN 15830 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19574 80.362 NaN 1006800 35 0 544810 0.261 -1 0 72 421.2592844814241 840.5040160296483 2 421.25982666015625 MULTI HCD FTMS 0 0 0 19572 613635.625 0.7057360801215817 6 -0.1703948974609375 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.5186 0 0 675.425034561678 0 675.425034561678 0 9.665266051846935 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5186 - 31 + NaN NaN 232732.1 NaN 15831 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19575 80.365 NaN 741320 35 0 136890 0.261 + 18561 MVESKVGQDS 10 82 540.2583334744338 NaN 0 540.2761840820312 PEAK HCD FTMS 0 0 0 19572 18267.97265625 1 0 0 3 Unmodified _MVESKVGQDS_ ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1 14.405379775768559 0.3259538031337542 1 VECEQE 6 7 40.028 0 0 3.7115 0 0 131.05994338208524 227.13984094791252 358.1997843299978 0 0 0 0 0 0 0 0.5994850021680094 0.28872548999643577 VECEQE 3.7115 - 338 + NaN NaN 185940.2 NaN 15832 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19576 80.369 NaN 356850 35 0 62377 0.263 + 12584 KTPSVSPN 8 65 415.2236747270888 828.4327965209776 2 415.22412109375 MULTI HCD FTMS 0 0 0 19572 243007.390625 0.7454718944744535 3 -0.08514404296875 4 Unmodified _KTPSVSPN_ ENSG00000198691|ENST00000370225|ABCA4 7.289230182591677 0.5311777711368266 1 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.6875 0 0 663.3540286760542 0 663.3540286760542 0 -3.6066681818711395 -3.6066681818711395 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6875 - 70 + NaN NaN 138728.5 NaN 15833 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19577 80.372 NaN 517910 35 0 84249 0.261 + -1 YYNEHCFF 8 67 590.2320289074436 1178.449504881687 2 590.2145385742188 MULTI HCD FTMS 0 0 0 19572 39940.2578125 0.8956027400188008 -1 0.02944183349609375 5 Carbamidomethyl (C) _YYNEHC(Carbamidomethyl (C))FF_ REV__ENSG00000143278|ENST00000367412|F13B 2.8892196856762586 0.5377058178582064 1 YY[Y{I|L}]T 5 -1 19.321 0 0 1.6396 0 0 0 472.11103987608084 472.11103987608084 11.874081049124497 0 0 0 0 0 1.5228787452803376 0 0 YY[Y{I|L}]T 1.6396 - 43 NaN NaN 167096 NaN 15834 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19578 80.375 NaN 223450 35 0 76258 0.262 + 25811 SLPESVPLF 9 38 494.7711091569797 987.5276653807595 2 494.7721862792969 MULTI HCD FTMS 0 0 0 19572 92050.328125 0.7120287677354654 -1 0.02944183349609375 6 Unmodified _SLPESVPLF_ ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401-2|DENND4A;nc|ENSG00000174485|Q7Z401|DENND4A 28.486842064014134 0.11819662193267319 1 V[{I|L}P]{M(Oxidation (M))|F} 4 5 23.188 0 0 2.348 0 0 513.2417289567345 0 513.2417289567345 0 22.078343878162343 0 0 0 1 0 0 0 + V[{I|L}P]{M(Oxidation (M))|F} 2.348 + + 5 + NaN NaN 114915.1 NaN 15835 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19579 80.379 NaN 508030 35 0 34449 0.261 + -1 YLWCLPVM 8 97 549.2619172231418 1096.5092815130836 2 549.2735595703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _YLWC(Carbamidomethyl (C))LPVM(Oxidation (M))_ REV__ENST00000262067.4_1_7:16823147-16823477:+|nuORF 24.20995872069341 0.415665547393293 1 [Y{I|L}]A{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F} 10 -1 + 46.756 0 0 4.2641 4.2641 82.199 0 0 0 12.058546584526795 4.287114778019898 4.287114778019898 4.287114778019898 0 1.2346368802282015 1.5228787452803376 0.3494850021680094 0 [Y{I|L}]A{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F};[Y{I|L}]AW{I|L}ES{[ES]|[DT]|[{I|L}C]};[Y{I|L}]A{[DA]|[EG]}{I|L}ES{[ES]|[DT]|[{I|L}C]};[Y{I|L}]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E[VG]{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E[DG]M;[Y{I|L}]A[W{I|L}][WD]M;[Y{I|L}]{[CA]|SS}[VP]ES{[ES]|[DT]|[{I|L}C]};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F}[DG]M;[Y{I|L}]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WD]M 4.2641;3.8731;3.0334;2.4261;2.0744;1.7188;1.6862;1.6065;1.5181;1.4949 -;-;-;-;-;-;-;-;-;- 1011 + NaN NaN 185073.2 NaN 15836 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19580 80.382 NaN 176710 35 0 65663 0.261 -1 YIICFVPYH 9 38 606.3001416477327 1210.5857303622654 2 606.301025390625 MULTI HCD FTMS 0 0 0 19572 50887.375 0.5939335217008848 -1 0.02944183349609375 8 Carbamidomethyl (C) _YIIC(Carbamidomethyl (C))FVPYH_ ENSG00000174946|ENST00000309180|GPR171 9.347437153973935 0.2795965555214564 1 H 1 -1 3.0989 0 0 0.25599 0 0 550.3160292898029 520.2040499322874 1070.5200792220903 0 0 0 0 0 0 0 0 0 H 0.25599 + + 7 + NaN NaN 107319.6 NaN 15837 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19581 80.385 NaN 72934 35 0 19771 0.264 + 28649 TRRLSGPP 8 42 442.2591820358507 NaN 0 442.2595520019531 PEAK HCD FTMS 0 0 0 19572 27949.630859375 0.5277750526808365 -2 0.05538177490234375 9 Unmodified _TRRLSGPP_ ENST00000262376.10_1_16:4930962-4931145:+|nuORF 2.302733041254933 0.38822285293237185 1 Y 1 8 3.9794 0 0 0.45092 0 0 584.3726903883046 132.04561792545158 716.4183083137561 0 0 0 0 0 0 0 0 0 Y 0.45092 - 1 + NaN NaN 106987.8 NaN 15838 3741 19572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19583 80.39 NaN 5060000 35 0 1098200 0.327 + 17607 LYYDAIWHF 9 95 614.2951260546212 1226.5756991760422 2 614.296142578125 MULTI HCD FTMS 0 0 0 19582 3290195.75 0.14370922766258137 7 -0.19329833984375 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 117.59872219059416 0.0017018906413822257 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 94.039 0 0 7.6668 7.6668 87.796 0 0 0 3.6856252710011717 3.6856252710011717 3.6856252710011717 3.6856252710011717 0 2.4247425010840047 2 0.8979400086720375 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};{I|L}YDYA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}PN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}ADH{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}PGG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]DPH{I|L}[VS]H{M(Oxidation (M))|F} 7.6668;7.3663;6.6669;6.0502;5.8137;5.6612;5.6041;5.1211;5.0665;4.9865 +;+;-;-;-;-;-;-;-;- + 4461 NaN NaN 511214 NaN 15839 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19584 80.395 NaN 2254200 35 0 163920 0.249 + 27664 TALNLFFKL 9 91 533.8184314102489 1065.6223098872977 2 533.8192138671875 MULTI HCD FTMS 0 0 0 19582 1923804.5 0.3534357807237223 7 -0.19329833984375 2 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 193.2943466776899 1.661812519250559E-13 1 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 130.02 0 0 12.202 12.202 97.047 0 0 0 39.51906091656872 16.478174818886373 16.478174818886373 17.21340305007878 0 2.579689690656103 1.6989700043360187 1.979339555460717 1.9361818737241734 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;[TA]{I|L}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K{I|L};[TA]{I|L}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L}K;TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 12.202;10.586;10.317;9.8779;8.8639;8.7017;8.4931;8.3918;8.2626;7.9862 +;-;-;-;-;-;+;-;-;- + 1481 NaN NaN 403806.6 NaN 15840 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19585 80.398 NaN 864260 35 0 109120 0.261 + 6284 FPFILGVTF 9 86 520.7949260061926 1039.575299079185 2 521.2854614257812 MULTI HCD FTMS 0 0 0 19582 28510.06640625 0.7053976144793596 1 -0.02944183349609375 3 Unmodified _FPFILGVTF_ REV__ENSG00000142583|ENST00000377424|SLC2A5 21.74664581756881 0.17247014374749275 1 TVA[PA]AVT{M(Oxidation (M))|F} 9 -1 58.477 0 0 5.6251 0 0 164.09760926920688 0 164.09760926920688 0 26.614334228094158 0 0 0 0 0 1.6872730750747857 0 TVA[PA]AVT{M(Oxidation (M))|F} 5.6251 - 2583 + NaN NaN 216913.9 NaN 15841 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19586 80.402 NaN 263430 35 0 110630 0.261 + 13044 KYKRLKAE 8 45 518.317711573165 1034.6208702131298 2 518.3178100585938 MULTI HCD FTMS 0 0 0 19582 314642 0.9146598849106079 1 -0.02944183349609375 4 Unmodified _KYKRLKAE_ ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 15 NaN NaN 117447.1 NaN 15842 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19587 80.405 NaN 329810 35 0 12624 0.261 + 30462 VLSARSSRV 9 79 487.79078151675463 973.5670101003093 2 487.79144287109375 MULTI HCD FTMS 0 0 0 19582 211946.6875 0.3414794795437887 58 -1.6654129028320312 5 Unmodified _VLSARSSRV_ ENST00000274793.11_1_6:46690657-46703025:-|nuORF 5.296884461304476 0.3108627248283497 1 VR 2 7 10.969 0 0 1.1267 0 0 0 715.3758028619749 715.3758028619749 3.6227313277985473 0 0 0 0 0 0 0 0 VR 1.1267 - 60 + NaN NaN 129865.9 NaN 15843 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19588 80.408 NaN 521370 35 0 139850 0.261 + 17306 LYPQFMFHL 9 79 598.3019807680839 1194.5894086029678 2 598.3028564453125 MULTI HCD FTMS 0 0 0 19582 175141.203125 0.06395932805004818 29 -0.8317031860351562 6 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 74.42276476219924 0.007657080072768255 1 {I|L}Y[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 63.61 0 0 5.3248 5.3248 87.702 0 0 0 41.183422931974945 3.6646027095316214 3.6646027095316214 9.71217778224478 0 2.278659694992122 1.6989700043360187 0 0.3252574989159953 + + {I|L}Y[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}][QP]{M(Oxidation (M))|F}MH{M(Oxidation (M))|F}{I|L};{I|L}Y[QP]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}M{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V[TP]M{M(Oxidation (M))|F}H{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V[TP]MH{M(Oxidation (M))|F}{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{I|L}YM{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}MH{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[PA]{I|L}YM{M(Oxidation (M))|F}H{I|L} 5.3248;4.5118;4.0192;3.4435;2.6519;2.1592;1.9636;1.601;1.471;1.1383 +;+;-;-;-;-;-;-;-;- + 697 + NaN NaN 163357.3 NaN 15844 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19589 80.412 NaN 363430 35 0 104640 0.261 + 26593 SVTMLFSQF 9 60 530.2629660202922 1058.5113791073843 2 530.2636108398438 MULTI HCD FTMS 0 0 0 19582 141228.109375 0.7803424576758318 1 -0.02944183349609375 7 Unmodified _SVTMLFSQF_ ENST00000420283.2_1_6:116573500-116573923:-|nuORF 19.256988751693697 0.19398022840297344 1 T{M(Oxidation (M))|F}N 3 7 24.208 0 0 2.287 0 0 678.3413542123889 0 678.3413542123889 0 3.190906313791327 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F}N 2.287 - 163 NaN NaN 143067 NaN 15845 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19590 80.415 NaN 387320 35 0 38608 0.261 + 19688 NWSSFVDNTF 10 89 608.7676417817456 1215.5207306302912 2 608.76904296875 MULTI HCD FTMS 0 0 0 19582 121911.1171875 1 0 0 8 Unmodified _NWSSFVDNTF_ ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1 78.61045856554632 0.007382707188123376 1 {[WN]|[YH]}SS{M(Oxidation (M))|F}VDNT{M(Oxidation (M))|F} 10 0 + 82.986 0 0 6.8272 6.8272 87.794 0 0 0 29.80082161704695 65.19467852499189 29.80082161704695 7.134679910804408 0 1.8684151806525389 1.5228787452803376 0.7614393726401688 1.0189301784845295 + + {[WN]|[YH]}SS{M(Oxidation (M))|F}VDNT{M(Oxidation (M))|F};{[WN]|[YH]}SS{M(Oxidation (M))|F}VDTN{M(Oxidation (M))|F};{[WN]|[YH]}SS{M(Oxidation (M))|F}VDGGT{M(Oxidation (M))|F};{[WN]|[YH]}SS{M(Oxidation (M))|F}VDTGG{M(Oxidation (M))|F};{[WN]|[YH]}SS{M(Oxidation (M))|F}VDT{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}C]|[YS]}HS{M(Oxidation (M))|F}VDNT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}HS{M(Oxidation (M))|F}VDTN{M(Oxidation (M))|F};{[WN]|[YH]}S[YE][VG]NT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}HS{M(Oxidation (M))|F}VDGGT{M(Oxidation (M))|F};{[WN]|[YH]}SS{M(Oxidation (M))|F}V{[MS]|[{M(Oxidation (M))|F}A]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8272;6.2403;6.0733;5.4863;5.352;4.3335;3.7465;3.3835;3.342;3.2597 +;-;-;-;-;-;-;-;-;- + 1111 NaN NaN 139767.5 NaN 15846 3742 19582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19592 80.42 NaN 4160400 35 0 777880 0.327 + 11082 IYGYTFYSI 9 97 563.7756219205577 1125.5366909079153 2 563.7598266601562 MULTI HCD FTMS 0 0 0 19591 128280.546875 0.7664723370121718 2 -0.0523834228515625 1 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 112.59319219568356 0.00251905749371435 1 [Y{I|L}]GYT{M(Oxidation (M))|F}YS{I|L} 9 0 + 68.077 0 0 6.0484 6.0484 86.618 0 0 0 8.212112250009653 7.449660662741934 7.449660662741934 7.865320089195592 0 1.816901560044258 1.3010299956639813 1.3129529932484498 0 + + [Y{I|L}]GYT{M(Oxidation (M))|F}YS{I|L};[Y{I|L}]GYT{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}VT{M(Oxidation (M))|F}YS{I|L};[Y{I|L}]S[PG]{M(Oxidation (M))|F}DQS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}VT{M(Oxidation (M))|F}SY{I|L};[Y{I|L}]S[PG]{M(Oxidation (M))|F}QDS{I|L};[Y{I|L}]G[PS]{M(Oxidation (M))|F}DQS{I|L};[Y{I|L}][QP]QDYS{I|L};[Y{I|L}]G[PA]QDYS{I|L};[Y{I|L}]A[PG]QDYS{I|L} 6.0484;5.3496;5.3188;4.8684;4.62;4.5312;4.4722;4.3822;4.347;4.1602 +;-;-;-;-;-;-;-;-;- + 5999 NaN NaN 713091.8 NaN 15847 3743 19591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19593 80.424 NaN 1381700 35 0 224110 0.261 + 31670 VYKDLLVLF 9 99 555.334214269282 1108.653875605364 2 555.3356323242188 MULTI HCD FTMS 0 0 0 19591 565684 0.4884752903156517 2 -0.0523834228515625 2 Unmodified _VYKDLLVLF_ ENSG00000037637|ENST00000375592|FBXO42 76.82478488871298 0.006879825292024087 1 VYKD{I|L}{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 97.239 0 0 8.7709 8.7709 93.719 0 0 0 10.261051157543463 10.261051157543463 10.261051157543463 10.261051157543463 0 2.943672679568534 1.6989700043360187 0.5228787452803376 0 + + VYKD{I|L}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]KD{I|L}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{I|L}D{I|L}V{I|L}{M(Oxidation (M))|F};[YV]KD{I|L}{I|L}{I|L}V{M(Oxidation (M))|F};[YV]KD{I|L}V{I|L}{I|L}{M(Oxidation (M))|F};[YV]KD{I|L}{I|L}V{M(Oxidation (M))|F}{I|L};[YV]K{I|L}D{I|L}{I|L}V{M(Oxidation (M))|F};[YV]K{I|L}DV{I|L}{I|L}{M(Oxidation (M))|F};[YV]K{I|L}VEV{I|L}{M(Oxidation (M))|F};[YV]K{I|L}D{I|L}V{M(Oxidation (M))|F}{I|L} 8.7709;7.8453;7.6683;6.7282;6.6924;6.6321;6.5511;6.5154;6.5154;6.455 +;+;-;-;-;-;-;-;-;- + 2858 + NaN NaN 290499.4 NaN 15848 3743 19591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19594 80.428 NaN 1123100 35 0 125940 0.261 + 13444 KYPENFFLL 9 111 585.8132425088911 1169.6119320845821 2 585.8148193359375 MULTI HCD FTMS 0 0 0 19591 426441.0625 0.002150931320576943 176 -4.406494140625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.009787749748478139 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 76.295 0 0 6.5231 6.5231 88.886 0 0 0 5.737862141609185 49.310070757400894 5.737862141609185 9.208187539523749 0 2.3979400086720375 0 0 1.3441876774005248 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};YY[{I|L}A]N[PG]{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L} 6.5231;5.7358;4.9626;4.1753;3.9436;3.5889;3.2596;3.2389;3.1563;2.6767 +;-;-;-;-;-;-;-;-;- + 1825 NaN NaN 253596.7 NaN 15849 3743 19591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19595 80.431 NaN 382170 35 0 43984 0.261 + 16779 LYDSETKNANS 11 70 621.2853467040056 1240.5561404748112 2 621.2862548828125 MULTI HCD FTMS 0 0 0 19591 196867.375 0.1157742284230932 8 -0.21628570556640625 4 Unmodified _LYDSETKNANS_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 13.614867670302875 0.33845562336951207 1 {I|L}Y[DP]{I|L}ADY 8 7 66.904 0 0 5.3931 0 0 0 287.1037691705688 287.1037691705688 43.94524706148886 0 0 0 0 2.805462187404089 2 0 0 {I|L}Y[DP]{I|L}ADY 5.3931 - 701 + NaN NaN 143299.1 NaN 15850 3743 19591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19596 80.434 NaN 243030 35 0 58517 0.264 + 25269 SAVELVVAL 9 49 450.77332468417364 899.5320964351473 2 450.7742614746094 MULTI HCD FTMS 0 0 0 19591 57666.24609375 0.04482264712663523 8 -0.21628570556640625 5 Unmodified _SAVELVVAL_ KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant 34.10243960390752 0.09241788333544565 1 {I|L}VVA{I|L} 5 4 50.494 0 0 5.6134 0 0 386.1790943830094 0 386.1790943830094 0 38.50441173680957 0 0 0 1.774227503252014 0 0 0 + {I|L}VVA{I|L} 5.6134 + + 42 NaN NaN 117951.9 NaN 15851 3743 19591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19597 80.438 NaN 167980 35 0 12152 0.261 -1 LFNKEMIL 8 76 512.2814807207097 1022.5484085082195 2 512.2830810546875 MULTI HCD FTMS 0 0 0 19591 41684.9609375 0.33322527000635016 -18 0.53472900390625 6 Oxidation (M) _LFNKEM(Oxidation (M))IL_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant 8.593279151180031 0.5292430274356741 1 SV{[QN]|[E{I|L}]|[KN]}N 5 -1 10.991 0 0 1.0749 0 0 462.250291892775 0 462.250291892775 0 3.7894911248349983 0 0 0 0 0 0 0 SV{[QN]|[E{I|L}]|[KN]}N 1.0749 - 147 NaN NaN 125002 NaN 15852 3743 19591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19599 80.443 NaN 3268200 35 0 750370 0.327 + 23141 RFILNLPTF 9 114 560.8295653499299 1119.6445777666597 2 560.8300170898438 MULTI HCD FTMS 0 0 0 19598 1251887.5 0.18089367192389183 6 -0.17382049560546875 1 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 134.295615338601 0.00034446139420701925 1 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 90.473 0 0 8.0805 8.0805 91.538 0 0 0 0.22652676957102358 43.1781192265799 0.22652676957102358 9.208187539523749 0 2.579689690656103 0 0.28872548999643577 1.4163865622122673 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}GG{I|L}[R{I|L}]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KQ]KKPT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[KA][EP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}[PA]{I|L}P[HK];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}N{I|L}[R{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}GG{I|L}[R{I|L}]{M(Oxidation (M))|F} 8.0805;7.2581;4.2506;3.4282;3.2861;2.4864;2.3378;2.1427;1.6227;1.5153 +;-;-;-;-;-;-;-;-;- + 1987 NaN NaN 583534.3 NaN 15853 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19600 80.447 NaN 725690 35 0 78118 0.264 + 20760 PGKRGRPG 8 88 412.7459692073516 823.4773854815032 2 412.7463073730469 MULTI HCD FTMS 0 0 0 19598 413105.75 0.17537612901322264 6 -0.17382049560546875 2 Unmodified _PGKRGRPG_ ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;nc|ENSG00000060718|P12107-4|COL11A1 2.302733041254933 0.5385759549224092 1 A 1 8 7.302 0 0 0.88673 0 0 105.0786437039355 644.3503296541768 749.4289733581123 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.88673 - 41 + NaN NaN 181733.3 NaN 15854 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19601 80.451 NaN 618130 35 0 37800 0.261 + 15283 LPAFIMITL 9 86 509.8036971120352 1017.5928412908704 2 509.80413818359375 MULTI HCD FTMS 0 0 0 19598 536701.9375 0.6359344155751826 -20 0.5871124267578125 3 Unmodified _LPAFIMITL_ tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1 2.0597508629832335 0.3354026079994024 1 V 1 9 6.9897 0 0 0.68689 0 0 691.3989764000486 224.0974520318969 915.4964284319454 0 0 0 0 0 0 0 0 0 V 0.68689 - 79 + NaN NaN 174020.5 NaN 15855 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19602 80.454 NaN 254650 35 0 40446 0.261 + 31860 VYMSCFPFFI 10 65 627.2901184239616 1252.5656839147232 2 627.2907104492188 MULTI HCD FTMS 0 0 0 19598 115918.9453125 0.21817382744263816 16 -0.44771575927734375 4 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 34.10243960390752 0.1965851268881605 1 DVVTM{I|L} 6 -1 62.638 0 0 5.0008 0 0 576.221971580275 0 576.221971580275 0 47.94531259372398 0 0 0 1.392159058960253 0 0.805462187404089 0 DVVTM{I|L} 5.0008 - 108 NaN NaN 111998 NaN 15856 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19603 80.457 NaN 432160 35 0 40873 0.261 + 7631 FYINSGTLQF 10 67 595.2981114266805 1188.581669920161 2 595.2982177734375 MULTI HCD FTMS 0 0 0 19598 261088.484375 0.4864237301319117 -4 0.11458587646484375 5 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 135.86342318000737 7.994840703560577E-06 1 [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 106.48 0 0 8.9584 8.9584 92.097 0 0 0 7.269987279362624 97.89381281052492 7.269987279362624 9.164539485499247 0 2.6237125054200234 0 1.4247425010840047 1.086696871556164 + + [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}[AG]{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SGT{I|L}Q{M(Oxidation (M))|F} 8.9584;8.1873;7.5933;6.7069;6.505;5.9358;3.4574 +;-;-;-;-;-;- + 662 NaN NaN 149532.3 NaN 15857 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19604 80.461 NaN 442030 35 0 35926 0.261 -1 FVTWIEGVM 9 84 549.270890180684 1096.5272274281679 2 549.2525634765625 MULTI HCD FTMS 0 0 0 19598 74961.078125 0.45039441709120387 14 -0.3868865966796875 6 Oxidation (M) _FVTWIEGVM(Oxidation (M))_ ENSG00000122194|ENST00000308192|PLG 39.957323273324995 0.06554068735427583 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{I|L}[C(Carbamidomethyl (C))K]{I|L} 8 -1 36.393 0 0 3.3189 0 0 0 129.03512276733275 129.03512276733275 14.503187623076954 0 0 0 0 0.8494850021680094 1.2218487496163564 0.3494850021680094 0.3054621874040891 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{I|L}[C(Carbamidomethyl (C))K]{I|L} 3.3189 - 429 NaN NaN 144925.4 NaN 15858 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19605 80.464 NaN 304330 35 0 41842 0.261 + 20531 PDTFFTCLLS 10 72 572.2715116568476 1142.528470380495 2 572.2708129882812 MULTI HCD FTMS 0 0 0 19598 117560.0625 0.8880348281167287 3 -0.0852508544921875 7 Unmodified _PDTFFTCLLS_ MYO16|p.D1054Ffs*16|1|0.18|ENSG00000041515|chr13:109055484-109055490|TTGATAA/-|frameshift_variant 13.90604991867851 0.3810395177745597 1 {M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 4 8 35.745 0 0 3.1286 0 0 552.2905879141517 0 552.2905879141517 0 7.566212630749831 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 3.1286 - 384 + NaN NaN 136724 NaN 15859 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19606 80.467 NaN 169650 35 0 21402 0.261 + -1 YIMSIKNYR 9 55 602.3135266082954 1202.6125002833908 2 602.3130493164062 MULTI HCD FTMS 0 0 0 19598 37333.33203125 0.5155099049751526 9 -0.24916839599609375 8 Oxidation (M) _YIM(Oxidation (M))SIKNYR_ REV__tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1 18.13498045792455 0.20367413111508956 1 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1594 0 0 936.4855559215092 0 936.4855559215092 0 9.658044088628937 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.1594 - 47 NaN NaN 102709.4 NaN 15860 3744 19598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19608 80.472 NaN 984240 35 0 51135 0.327 + 14839 LKEQKERA 8 94 501.2905065387472 1000.5664601442944 2 501.2911071777344 MULTI HCD FTMS 0 0 0 19607 1026152.625 0.7302598308216149 -15 0.4306488037109375 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 6.723162845929126 0.5320176132289695 1 Q 1 7 9.2217 0 0 0.92165 0 0 458.272584600265 411.22300134830317 869.4955859485682 0 0 0 0 0 0.6747425010840047 0 0 0 + Q 0.92165 + + 55 + NaN NaN 234076 NaN 15861 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19609 80.477 NaN 1041400 35 0 117000 0.261 + 29136 TYIKFINLF 9 88 579.8315935249233 1157.6486341166465 2 579.8320922851562 MULTI HCD FTMS 0 0 0 19607 581411.1875 0.6814567469285626 4 -0.11147308349609375 2 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 103.41943736471063 0.004016698775839292 1 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 104.75 0 0 9.0483 9.0483 88.422 0 0 0 5.127881306118454 5.127881306118454 5.127881306118454 0.6075951217157325 0 2.2302046884880937 2 0.7302046884880937 0.6549471895720984 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[K{I|L}]Y{M(Oxidation (M))|F}T{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}K[YT]{I|L}{M(Oxidation (M))|F} 9.0483;8.9958;8.2529;8.2004;5.8906;5.7918;5.253;5.05;4.9964;4.7625 +;-;-;-;-;-;-;-;-;- + 699 NaN NaN 243500.2 NaN 15862 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19610 80.48 NaN 218930 35 0 9463.5 0.262 -1 0 68 479.2774935703601 956.5404342075202 2 479.2778015136719 MULTI HCD FTMS 0 0 0 19607 219165 0.20529400276235718 61 -1.7439498901367188 3 NaN NaN 1 QV 2 -1 11.498 0 0 1.202 0 0 458.2733271291983 268.1233309381469 726.3966580673452 0 0 0 0 0 0.805462187404089 0 0 0 QV 1.202 - 48 + NaN NaN 111075.2 NaN 15863 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19611 80.483 NaN 250290 35 0 23963 0.261 -1 YYMDYLAAL 9 68 569.75958373651 1137.5046145398198 2 569.7601928710938 MULTI HCD FTMS 0 0 0 19607 76796.265625 0.09767492097509559 26 -0.7498779296875 4 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 21.74664581756881 0.17247014374749275 1 DN{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]AA{I|L} 8 -1 44.998 0 0 3.9558 0 0 165.07888991523595 0 165.07888991523595 0 38.00820653692661 0 0 0 0.9247425010840047 0 0 0 DN{M(Oxidation (M))|F}[YC(Carbamidomethyl (C))]AA{I|L} 3.9558 - 320 NaN NaN 121855.1 NaN 15864 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19612 80.487 NaN 392670 35 0 53076 0.261 + 23033 RDDLLSDYF 9 86 572.2715116568476 1142.528470380495 2 572.2722778320312 MULTI HCD FTMS 0 0 0 19607 95463.515625 0.7211201226561573 4 -0.11147308349609375 5 Unmodified _RDDLLSDYF_ ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C 20.453626601364224 0.18364154288633264 1 A{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 5 6 42.88 0 0 3.7531 0 0 481.2454026088138 0 481.2454026088138 0 16.67710500519766 0 0 0 0.2742275032520141 0 0.6694451763165201 0 A{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 3.7531 - 673 + NaN NaN 153811 NaN 15865 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19613 80.49 NaN 216790 35 0 20640 0.261 + 18316 MPESEEIAQLL 11 64 630.3126046339625 1258.6106563347248 2 630.2910766601562 MULTI HCD FTMS 0 0 0 19607 37305.890625 0.4087927237755512 -3 0.08182525634765625 6 Unmodified _MPESEEIAQLL_ ENSG00000108465|ENST00000338399|CDK5RAP3;ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3 13.614867670302875 0.33845562336951207 1 AQ{I|L}{I|L} 4 7 40.477 0 0 3.216 0 0 815.3369500021182 0 815.3369500021182 0 15.149772019467207 0 0 0 1.1549471895720984 0 0 0 + AQ{I|L}{I|L} 3.216 + + 172 NaN NaN 115545 NaN 15866 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19614 80.493 NaN 263010 35 0 37106 0.263 + 31134 VTSWYDKL 8 54 506.2609204025604 1010.5072878719208 2 506.26171875 MULTI HCD FTMS 0 0 0 19607 82577.9375 0.7513655406631139 -3 0.08182525634765625 7 Unmodified _VTSWYDKL_ REV__ENSG00000110245|ENST00000227667|APOC3 23.1484247019978 0.4234759064137959 1 S{I|L} 2 -1 19.623 0 0 1.9419 0 0 792.3798256863153 0 792.3798256863153 0 3.2973492024245843 0 0 0 0.3252574989159953 0 0.3807196863200844 0 S{I|L} 1.9419 - 27 NaN NaN 118614.6 NaN 15867 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19615 80.497 NaN 198810 35 0 11450 0.261 + 1766 CLLSTLQFV 9 74 512.2814807207097 1022.5484085082195 2 512.2817993164062 MULTI HCD FTMS 0 0 0 19607 65965.578125 0.5273220146418209 -16 0.466766357421875 8 Unmodified _CLLSTLQFV_ ENST00000468090.5_1_21:45180432-45180885:+|nuORF 7.289230182591677 0.29575926068275815 1 W 1 9 5.4846 0 0 0.53636 0 0 422.26015274825687 411.1930330865844 833.4531858348413 0 0 0 0 0 0 0 0 0 W 0.53636 - 151 + NaN NaN 107903.7 NaN 15868 3745 19607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19617 80.502 NaN 353250 35 0 29839 0.327 -1 0 77 404.2327122446908 806.4508715561816 2 404.2330322265625 MULTI HCD FTMS 0 0 0 19616 221370.828125 0.09594899215359756 8 -0.21300506591796875 1 NaN NaN 1 R 1 -1 5.401 0 0 0.66972 0 0 282.1675207576206 365.16034876041255 647.3278695180331 0 0 0 0 0 0.3807196863200844 0 0 0 R 0.66972 - 22 + NaN NaN 133992.4 NaN 15869 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19618 80.506 NaN 974340 35 0 121510 0.261 + 17263 LYPLTNYTF 9 88 566.2875723167772 NaN 0 566.299072265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 85.64151623876279 0.0011438763820103663 1 TYNT 4 6 31.346 0 0 2.7726 0 0 165.06038274138797 483.26069205114976 648.3210747925377 0 0 0 0 0 1.2134679910804405 0 0.5891368308784531 0.28872548999643577 TYNT 2.7726 - 563 + NaN NaN 233543.4 NaN 15870 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19619 80.51 NaN 469790 35 0 92817 0.261 + 33704 YLAATYDGQF 10 102 574.76756321513 NaN 0 574.7496337890625 PEAK HCD FTMS 0 0 0 19616 43893.6640625 0.6385736811064723 2 -0.059051513671875 3 Unmodified _YLAATYDGQF_ ENSG00000182752|ENST00000328252|PAPPA 15.847184025352803 0.31427456382696234 1 YCST{I|L}SY 7 8 34.205 0 0 2.9808 0 0 165.11567955350375 162.05550562076408 327.17118517426786 0 0 0 0 0 0.28872548999643577 0 0.6861818737241735 0 YCST{I|L}SY 2.9808 - 1849 + NaN NaN 160853.2 NaN 15871 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19620 80.513 NaN 262500 35 0 33545 0.261 + 32338 VYVGFQVQL 9 65 526.7921085815913 1051.5696642299824 2 526.792724609375 MULTI HCD FTMS 0 0 0 19616 112345.9453125 0.04190968270315459 16 -0.4477386474609375 4 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 78.14939416004806 0.006451203201226903 1 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 72.669 0 0 6.9105 6.9105 89.6 0 0 0 0.48377709306983263 55.67918449261214 0.48377709306983263 9.208187539523749 0 2.805462187404089 0 0 0 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]VG[KS]GVP{M(Oxidation (M))|F} 6.9105;6.0349;6.0349;5.1633;2.627 +;-;-;-;- + 305 NaN NaN 122266.5 NaN 15872 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19621 80.516 NaN 261320 35 0 39611 0.261 + 18682 MYPAIFDQL 9 59 557.267804568391 1112.521056203582 2 557.268310546875 MULTI HCD FTMS 0 0 0 19616 108535.6796875 0.7167529362867109 -3 0.08188629150390625 5 Oxidation (M) _M(Oxidation (M))YPAIFDQL_ ENSG00000061987|ENST00000393630|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2 65.23502041540118 0.010630085227462206 1 {I|L}{M(Oxidation (M))|F}DQ{I|L} 5 4 55.379 0 0 4.9778 0 0 478.18806167408826 0 478.18806167408826 0 36.399451679612 0 0 0 2.3494850021680094 0 0.6505149978319906 0.9436726795685342 + {I|L}{M(Oxidation (M))|F}DQ{I|L} 4.9778 + + 88 + NaN NaN 122646.9 NaN 15873 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19622 80.52 NaN 96560 35 0 12002 0.261 + 10924 IYAGVGEFSF 10 44 545.2663620370323 1088.5181711408645 2 545.26708984375 MULTI HCD FTMS 0 0 0 19616 31010.662109375 0.4253188071037679 4 -0.114776611328125 6 Unmodified _IYAGVGEFSF_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 22.736283301280096 0.29844449404982915 1 RW{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5 7 41.983 0 0 3.8569 0 0 347.18528945136876 0 347.18528945136876 0 36.04039720691517 0 0 0 1.305462187404089 0 0 0 RW{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3.8569 - 35 NaN NaN 98161.9 NaN 15874 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19623 80.523 NaN 68002 35 0 13653 0.262 + 33018 YCDRLVQDTPF 11 37 452.88073548252686 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 19616 18525.017578125 0.9577022317082258 -2 0.05904388427734375 7 Unmodified _YCDRLVQDTPF_ ENSG00000165233|ENST00000375464|CARD19;ENST00000466929.5_1_9:95858543-95872895:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENST00000495641.5_1_9:95858537-95872895:+|nuORF;nc|ENSG00000165233|Q96LW7|CARD19 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96692.5 NaN 15875 3746 19616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19625 80.528 NaN 2048000 35 0 437570 0.327 + 17608 LYYDAIWHF 9 97 614.2951260546212 1226.5756991760422 2 614.2957763671875 MULTI HCD FTMS 0 0 0 19624 1237462 0.05404988693508381 12 -0.33118438720703125 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 146.00731375242447 1.3047045798573153E-05 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 97.141 0 0 7.9197 7.9197 88.345 0 0 0 4.045656814890222 4.045656814890222 4.045656814890222 4.045656814890222 0 2.4247425010840047 2 1.2081706663129559 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};{I|L}YY{I|L}{[DA]|[EG]}WH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAHW{I|L}{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]A{I|L}DYWH{M(Oxidation (M))|F};[Y{I|L}]YD[WH]A{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}Y{I|L}A{I|L}WH{M(Oxidation (M))|F} 7.9197;7.5899;6.1448;6.1328;5.929;5.7282;5.5292;5.1402;4.8911;4.8624 +;+;-;-;-;-;-;-;-;- + 4354 NaN NaN 410269.8 NaN 15876 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19626 80.532 NaN 1166900 35 0 82377 0.261 + 27665 TALNLFFKL 9 89 533.8184314102489 1065.6223098872977 2 533.8189086914062 MULTI HCD FTMS 0 0 0 19624 743472.5 0.13658861047685333 12 -0.33118438720703125 2 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 179.17365725063826 1.1335045685127237E-12 1 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 123.81 0 0 11.619 11.619 97.858 0 0 0 37.28855930516417 16.478174818886373 16.478174818886373 24.76280941356464 0 2.579689690656103 1.3979400086720375 1.6593793813122064 1.9361818737241734 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[TA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}A;{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[TA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}A;{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[NV]|[RG]}{I|L}[HM]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L}N{I|L}[TA]{I|L} 11.619;9.2952;8.1197;7.6995;7.2556;6.4266;5.6851;4.4121;1.777;1.7518 +;-;+;-;-;-;-;-;-;- + 1255 NaN NaN 252766.8 NaN 15877 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19627 80.536 NaN 1392700 35 0 361780 0.261 + 11275 IYLTFPVAM 9 79 535.7832236618908 1069.5518943905815 2 535.7835083007812 MULTI HCD FTMS 0 0 0 19624 484421.21875 1 0 0 3 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 137.58523961978855 0.00014495867019203413 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F} 9 0 + 100.1 0 0 9.3594 9.3594 97.645 0 0 0 17.147642715192504 86.29161586377087 17.147642715192504 37.501225267834 0 3.1237125054200234 1.3010299956639813 1.5044321917401078 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[CT]|[{M(Oxidation (M))|F}G]}{I|L};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F};[Y{I|L}]{I|L}YA{M(Oxidation (M))|F}AP{I|L} 9.3594;5.8532;4.0745;3.5831;2.8026 +;-;-;-;- + 562 NaN NaN 297752.8 NaN 15878 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19628 80.539 NaN 301650 35 0 48254 0.261 + 18531 MTFDPQDIL 9 56 540.2583334744338 NaN 0 540.2762451171875 PEAK HCD FTMS 0 0 0 19624 11727.7890625 0.6419863486322652 5 -0.13111114501953125 4 Unmodified _MTFDPQDIL_ ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-3|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A 10.073929032068715 0.24642998803896465 1 VECEQE 6 8 24.399 0 0 2.2623 0 0 131.05947423479887 227.1399325006469 358.1994067354458 0 0 0 0 0 0 0 0.3252574989159953 0 VECEQE 2.2623 - 188 + NaN NaN 128788.3 NaN 15879 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19629 80.543 NaN 328090 35 0 11598 0.261 + 11816 KELQKGPFV 9 92 523.3037906164145 NaN 0 523.3038940429688 PEAK HCD FTMS 0 0 0 19624 175442.890625 0.3034266648824098 -10 0.28340911865234375 5 Unmodified _KELQKGPFV_ REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF 13.042465956692817 0.23204487237355156 1 V 1 -1 5.8412 0 0 0.55919 0 0 718.3987971978696 224.09792505435783 942.4967222522274 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.55919 + + 25 + NaN NaN 136572.5 NaN 15880 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19630 80.546 NaN 338950 35 0 54353 0.261 + -1 YYPAMDLMC 9 63 590.2320289074436 1178.449504881687 2 590.2147216796875 MULTI HCD FTMS 0 0 0 19624 33269.91796875 0.7460299788973285 5 -0.13111114501953125 6 Carbamidomethyl (C),Oxidation (M) _YYPAM(Oxidation (M))DLMC(Carbamidomethyl (C))_ REV__ENST00000476464.5_1_3:63996346-64008248:-|nuORF 5.230669730166228 0.3113646817964458 1 YY{I|L}YT 5 -1 29.297 0 0 2.486 0 0 0 472.11348128233084 472.11348128233084 23.812281309285623 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L}YT 2.486 - 31 NaN NaN 137885.5 NaN 15881 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19631 80.549 NaN 464820 35 0 49007 0.261 -1 TYNMVLNLL 9 82 548.7893167370247 NaN 0 548.7890014648438 PEAK HCD FTMS 0 0 0 19624 130116.4453125 1 0 0 7 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 53.832793166522166 0.036978982887966305 1 {I|L}N{I|L} 3 -1 35.194 0 0 3.2124 0 0 131.0954683128876 621.2341654804217 752.3296337933093 0 0 0 0 0 1.2614393726401687 0 0 0.6382104921644451 {I|L}N{I|L} 3.2124 + + 139 + NaN NaN 167375.2 NaN 15882 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19632 80.553 NaN 112850 35 0 36127 0.261 + 31123 VTPSEVLPF 9 26 494.7711091569797 987.5276653807595 2 494.77166748046875 MULTI HCD FTMS 0 0 0 19624 51101.5234375 0.39528109789242677 5 -0.13111114501953125 8 Unmodified _VTPSEVLPF_ ENST00000606901.1_1_5:140705901-140706042:+|nuORF 12.531546534597751 0.2520865569484384 1 {M(Oxidation (M))|F} 1 8 19.604 0 0 1.9852 0 0 822.4486991715783 0 822.4486991715783 0 19.604093769761874 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.9852 + + 5 + NaN NaN 101183.4 NaN 15883 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19633 80.556 NaN 115020 35 0 8468 0.261 + 7090 FRGKVSGPYYP 11 55 635.8326974276044 NaN 0 635.8187255859375 PEAK HCD FTMS 0 0 0 19624 7311.85986328125 0.4531657469909321 -1 0.02620697021484375 9 Unmodified _FRGKVSGPYYP_ REV__nc|ENSG00000211942|P01766|IGHV3-13 3.2813086475875832 0.3328120158028032 1 {I|L} 1 -1 5.4846 0 0 0.43197 0 0 149.13565412075792 1004.4103487604124 1153.5460028811704 0 0 0 0 0 0 0 0 0 {I|L} 0.43197 - 13 + NaN NaN 95815.2 NaN 15884 3747 19624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19635 80.561 NaN 1785500 35 0 344990 0.327 + 11083 IYGYTFYSI 9 84 563.7756219205577 1125.5366909079153 2 563.7587280273438 MULTI HCD FTMS 0 0 0 19634 84328.921875 0.5038627243320918 7 -0.18346405029296875 1 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 81.61307344734483 0.005330412723537057 1 [Y{I|L}]STA{M(Oxidation (M))|F}DY 8 6 56.877 0 0 5.0533 0 0 0 162.09076119419845 162.09076119419845 5.839993556128107 0 0 0 0 0 1.3010299956639813 2.004432191740108 0 [Y{I|L}]STA{M(Oxidation (M))|F}DY 5.0533 - 1994 NaN NaN 372998.5 NaN 15885 3748 19634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19636 80.565 NaN 466300 35 0 132310 0.261 + 17307 LYPQFMFHL 9 79 598.3019807680839 1194.5894086029678 2 598.30224609375 MULTI HCD FTMS 0 0 0 19634 127129.7265625 0.04642615067752271 35 -1.0023574829101562 2 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 64.23631603340823 0.01165516075559909 1 [Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 55.203 0 0 4.6211 4.6211 82.952 0 0 0 23.842546774221262 33.06331730173467 23.842546774221262 4.771212547196626 0 1.8882104921644451 2 0 0 + + [Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}MH{M(Oxidation (M))|F}{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}MH{M(Oxidation (M))|F}{I|L} 4.6211;4.2217;1.8718;1.4724 +;-;-;- + 438 NaN NaN 160276.2 NaN 15886 3748 19634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19637 80.569 NaN 641830 35 0 97511 0.261 -1 EMEGKKMAVT 10 104 570.2773566216824 1138.5401603101648 2 570.7903442382812 MULTI HCD FTMS 0 0 0 19634 12179.744140625 0.32375069982988114 -3 0.08855438232421875 3 Oxidation (M) _EMEGKKM(Oxidation (M))AVT_ ENSG00000113272|ENST00000231198|THG1L 18.1463463914782 0.3413772152514074 1 [YV]AGPYM{I|L}PE 10 -1 + 54.513 0 0 4.788 4.788 82.289 0 0 0 7.825160557860933 7.825160557860933 7.825160557860933 2.8006359340954035 0 0.6747425010840047 1.5228787452803376 0 0 [YV]AGPYM{I|L}PE;[YV]AGPYR{[QG]|[NA]}E;[YV]QPYM{I|L}PE;{M(Oxidation (M))|F}P{I|L}[YE]VGAP{M(Oxidation (M))|F};[YV]QPYR{[QG]|[NA]}E;[YV]AGP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}PE;{M(Oxidation (M))|F}P{I|L}[YE]VQP{M(Oxidation (M))|F};[YN]{I|L}PYM{I|L}PE;{M(Oxidation (M))|F}SRS[DG]VGAP{M(Oxidation (M))|F};[YV]AGP{M(Oxidation (M))|F}NRSE 4.788;4.542;4.2143;4.1007;3.9683;3.8733;3.527;3.4906;3.4894;3.368 -;-;-;-;-;-;-;-;-;- 4645 NaN NaN 176242 NaN 15887 3748 19634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19638 80.572 NaN 132590 35 0 6926 0.261 + 30463 VLSARSSRV 9 67 487.79078151675463 973.5670101003093 2 487.79071044921875 MULTI HCD FTMS 0 0 0 19634 111849.6953125 0.18020746723132364 64 -1.8191452026367188 4 Unmodified _VLSARSSRV_ ENST00000274793.11_1_6:46690657-46703025:-|nuORF 3.2813086475875832 0.32614229037259 1 {M(Oxidation (M))|F} 1 9 4.6041 0 0 0.47291 0 0 281.17932807081553 542.2981051080686 823.4774331788842 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.47291 - 4 + NaN NaN 115790.7 NaN 15888 3748 19634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19639 80.575 NaN 255580 35 0 41335 0.261 + 18317 MPESEEIAQLL 11 67 630.3126046339625 1258.6106563347248 2 630.3135375976562 MULTI HCD FTMS 0 0 0 19634 91258.6953125 1 0 0 5 Unmodified _MPESEEIAQLL_ ENSG00000108465|ENST00000338399|CDK5RAP3;ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3 17.44264345198275 0.3051040874848456 1 {I|L}AQ{I|L}{I|L} 5 6 48.443 0 0 3.849 0 0 702.2524281232437 0 702.2524281232437 0 17.095150145426317 0 0 0 1.5 0 0 0 + {I|L}AQ{I|L}{I|L} 3.849 + + 309 NaN NaN 130013.7 NaN 15889 3748 19634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19640 80.579 NaN 175730 35 0 37660 0.264 + 34620 YPPVQVLF 8 39 481.7707537869351 961.5269546406702 2 481.77117919921875 MULTI HCD FTMS 0 0 0 19634 52114.36328125 0.4391893262058478 -6 0.170379638671875 6 Unmodified _YPPVQVLF_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 24.67388899826682 0.4122521268485776 1 QV{I|L}{M(Oxidation (M))|F} 4 4 47.805 0 0 4.9718 0 0 456.22786147285314 0 456.22786147285314 0 40.81546893236258 0 0 0 1.8252574989159953 0 0 0 + QV{I|L}{M(Oxidation (M))|F} 4.9718 + + 64 NaN NaN 109918 NaN 15890 3748 19634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19642 80.584 NaN 681120 35 0 82952 0.327 + 13445 KYPENFFLL 9 79 585.8132425088911 1169.6119320845821 2 585.813720703125 MULTI HCD FTMS 0 0 0 19641 399664.46875 0.0020158725299961465 182 -4.592704772949219 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 63.960520009940105 0.0120409805053046 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 66.277 0 0 5.6666 5.6666 87.385 0 0 0 2.3367404008160264 28.881580146315784 2.3367404008160264 9.208187539523749 0 2.1861818737241734 0 0 1.031234684152075 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][NP]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][NP]E{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{M(Oxidation (M))|F}]{[ET]|[MV]}K{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.6666;4.8793;4.8263;4.3502;3.0967;2.6206;2.5672;1.7269;1.421;1.2508 +;-;-;-;-;-;-;-;-;- + 767 NaN NaN 190168.8 NaN 15891 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19643 80.588 NaN 865140 35 0 45561 0.261 + 28260 TLLSRVRSS 9 105 509.8036971120352 1017.5928412908704 2 509.8039855957031 MULTI HCD FTMS 0 0 0 19641 550444.1875 0.652217512601338 -15 0.4239654541015625 2 Unmodified _TLLSRVRSS_ ENSG00000198844|ENST00000361926|ARHGEF15 3.944395688203298 0.32111559684428237 1 D 1 9 9.9743 0 0 0.98018 0 0 61.052032127229445 838.4679338773954 899.5199660046248 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.98018 - 203 + NaN NaN 215810.6 NaN 15892 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19644 80.592 NaN 1251100 35 0 239140 0.261 + 23142 RFILNLPTF 9 98 560.8295653499299 1119.6445777666597 2 560.8299560546875 MULTI HCD FTMS 0 0 0 19641 349271.375 0.05046857766505105 11 -0.30670166015625 3 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 96.11092074494114 0.00436583732602279 1 VDN{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PT{M(Oxidation (M))|F} 9 5 73.554 0 0 6.5694 0 0 65.17500064149552 0 65.17500064149552 0 39.080306233405295 0 0 0 1.9247425010840047 0 1.7614393726401687 0.3494850021680094 VDN{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PT{M(Oxidation (M))|F} 6.5694 - 1615 + NaN NaN 274776.2 NaN 15893 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19645 80.595 NaN 351240 35 0 49299 0.261 + 31671 VYKDLLVLF 9 78 555.334214269282 1108.653875605364 2 555.3341064453125 MULTI HCD FTMS 0 0 0 19641 166511.421875 0.14378471928013267 8 -0.2162933349609375 4 Unmodified _VYKDLLVLF_ ENSG00000037637|ENST00000375592|FBXO42 45.69961567697781 0.039180348357221985 1 [YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 68.407 0 0 6.1703 6.1703 85.975 0 0 0 5.777099612925483 16.478174818886373 5.777099612925483 5.777099612925483 0 2.305462187404089 1.5228787452803376 0 0 + + [YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}]AT{[VA]|[{I|L}G]}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}V{M(Oxidation (M))|F};[YV][VS]{[VA]|[{I|L}G]}{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}]AT{[VA]|[{I|L}G]}{I|L}{I|L}V{M(Oxidation (M))|F};[YK]V{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}V]EV[YK]V{I|L}{M(Oxidation (M))|F};[YV][VS]{[VA]|[{I|L}G]}{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[VA]|[{I|L}G]}{I|L}V{I|L}{M(Oxidation (M))|F};[YK]V{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}V{M(Oxidation (M))|F} 6.1703;5.6492;5.2889;4.9093;4.7678;4.2817;4.078;4.028;3.8452;3.4003 +;-;-;-;-;-;-;-;-;- + 407 NaN NaN 146594 NaN 15894 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19646 80.598 NaN 648980 35 0 152170 0.261 + 17217 LYNPYWTAL 9 95 570.7896929712314 1139.5648330092627 2 570.8064575195312 MULTI HCD FTMS 0 0 0 19641 224404.25 0.831268090457962 -5 0.14101409912109375 5 Unmodified _LYNPYWTAL_ ENSG00000138600|ENST00000261854|SPPL2A;ENST00000560288.1_1_15:51040303-51057772:-|nuORF;SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant 29.081581746732265 0.1154664336125038 1 [YV]AGPYW[TA]{I|L} 10 3 + 59.078 0 0 5.1843 5.1843 84.618 0 0 0 10.413705284069223 49.82615565263082 10.413705284069223 6.505149978319906 0 1.3494850021680094 1.6989700043360187 0 0 [YV]AGPYW[TA]{I|L};[YV]AGPYP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};[YV]AGPY{M(Oxidation (M))|F}[NP]{I|L};[YV]QPYW[TA]{I|L};[YV]A{[MS]|[{M(Oxidation (M))|F}A]}VR{[DS]|[MA]|[CV]|TT}{I|L};[Y{I|L}]GGPYW[TA]{I|L};[YV]QPYP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L};[YV]AR[DG]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};[YV][CS]VVR{[DS]|[MA]|[CV]|TT}{I|L};[YV]QPY{M(Oxidation (M))|F}[NP]{I|L} 5.1843;4.6134;4.2642;4.1723;3.7404;3.6641;3.6015;3.5472;3.3418;3.2523 -;-;-;-;-;-;-;-;-;- 3397 NaN NaN 182982.3 NaN 15895 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19647 80.602 NaN 209410 35 0 23687 0.261 + 16780 LYDSETKNANS 11 68 621.2853467040056 1240.5561404748112 2 621.2859497070312 MULTI HCD FTMS 0 0 0 19641 64780.97265625 0.03809654660034372 14 -0.38869476318359375 6 Unmodified _LYDSETKNANS_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 16.565877749689598 0.3127433757948945 1 {I|L}Y[DP]{I|L}WY 7 8 56.221 0 0 4.5319 0 0 0 287.10349451236567 287.10349451236567 47.726241737226616 0 0 0 0 2.1307196863200843 1.6989700043360187 0 0 {I|L}Y[DP]{I|L}WY 4.5319 - 403 + NaN NaN 117864.1 NaN 15896 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19648 80.605 NaN 435070 35 0 71025 0.261 + 16906 LYFYYESRA 9 54 606.28786424809 1210.56117556298 2 606.775390625 MULTI HCD FTMS 0 0 0 19641 34347.98828125 1 0 0 7 Unmodified _LYFYYESRA_ TRPC5|p.T544S|1|0.59|ENSG00000072315|chrX:111847184-111847184|T/A|missense_variant 20.453626601364224 0.18364154288633264 1 G{I|L}GEAQ{M(Oxidation (M))|F} 7 8 30.477 0 0 2.5176 0 0 490.1908131330094 0 490.1908131330094 0 1.3349449946048253 0 0 0 0 0 0 0 G{I|L}GEAQ{M(Oxidation (M))|F} 2.5176 - 316 NaN NaN 158570 NaN 15897 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19649 80.608 NaN 147320 35 0 18510 0.261 -1 TPQFPDMIL 9 40 539.2679517160655 1076.5213504989308 2 539.268310546875 MULTI HCD FTMS 0 0 0 19641 29406.619140625 0.0015731316494320027 173 -4.334205627441406 8 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3418218961334 0 832.3418218961334 0 6.505149978319906 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 16 NaN NaN 101084.3 NaN 15898 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19650 80.612 NaN 221980 35 0 34071 0.261 + 34736 YPVSGCFDYL 10 67 582.2568618069739 1162.4991706807477 2 582.2581176757812 MULTI HCD FTMS 0 0 0 19641 89034.6953125 0.8497230864392769 -2 0.05576324462890625 9 Unmodified _YPVSGCFDYL_ DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1 36.12702656103203 0.1790159924230938 1 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L} 9 3 + 55.894 0 0 4.8081 4.8081 89.276 0 0 0 24.13734275855269 27.812346841520743 24.13734275855269 22.690223844863652 0 1.055462187404089 1.6989700043360187 0.4247425010840047 0 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L};[YV]P{[CT]|[{M(Oxidation (M))|F}G]}[HA]GG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]P{[CT]|[{M(Oxidation (M))|F}G]}[HQ]G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]P{[CT]|[{M(Oxidation (M))|F}G]}[HA]N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV][WD][HA]GG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]P[C(Carbamidomethyl (C))S][RH][MN];[YV]P{[CT]|[{M(Oxidation (M))|F}G]}[HA]R{[C(Carbamidomethyl (C))G]|[NC]};[YV][WD][HA]N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV][WD][HQ]G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV][WD][HA]R{[C(Carbamidomethyl (C))G]|[NC]} 4.8081;2.8563;2.2906;2.2906;2.2489;2.1391;2.0998;1.687;1.687;1.4962 -;-;-;-;-;-;-;-;-;- 325 NaN NaN 117628.8 NaN 15899 3749 19641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19652 80.617 NaN 1084400 35 0 54070 0.327 + 14840 LKEQKERA 8 92 501.2905065387472 1000.5664601442944 2 501.29083251953125 MULTI HCD FTMS 0 0 0 19651 1143337.5 0.8136542547186957 -10 0.2884063720703125 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 6.723162845929126 0.5320176132289695 1 Q 1 7 9.3532 0 0 0.93479 0 0 414.24639484436085 455.2502840631469 869.4966789075078 0 0 0 0 0 0.7134679910804405 0 0 0 + Q 0.93479 + + 24 + NaN NaN 258020.7 NaN 15900 3750 19651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19653 80.621 NaN 873110 35 0 87487 0.261 + 7632 FYINSGTLQF 10 89 595.2981114266805 1188.581669920161 2 595.29833984375 MULTI HCD FTMS 0 0 0 19651 405938.34375 0.7562878303235974 2 -0.04254150390625 2 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 135.86342318000737 7.994840703560577E-06 1 [Y{I|L}]{M(Oxidation (M))|F}NSGT{I|L}Q{M(Oxidation (M))|F} 10 2 + 105.53 0 0 8.8783 8.8783 88.654 0 0 0 1.5490195998574308 16.53212513775344 1.5490195998574308 1.5490195998574308 0 2.6989700043360187 1.154901959985743 1.3807196863200843 0.805462187404089 [Y{I|L}]{M(Oxidation (M))|F}NSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}NSGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}[AG]{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}GGSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}GGSGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}NSGKVD{M(Oxidation (M))|F} 8.8783;8.748;8.1073;7.977;7.7499;7.6196;6.6616;6.5313;6.4965;6.0747 -;+;-;-;-;-;-;-;-;- + 1899 NaN NaN 229254.4 NaN 15901 3750 19651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19654 80.625 NaN 242070 35 0 46244 0.261 + 31861 VYMSCFPFFI 10 59 627.2901184239616 1252.5656839147232 2 627.2911376953125 MULTI HCD FTMS 0 0 0 19651 66460.984375 0.12508781284723716 22 -0.6351318359375 3 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 26.88365393820708 0.25965138844209146 1 [YV]TVK{M(Oxidation (M))|F} 6 -1 56.055 0 0 4.4752 0 0 0 512.1267183893186 512.1267183893186 35.60985580494809 0 0 0 0 0.7396518287104438 1.6989700043360187 0.3252574989159953 0 [YV]TVK{M(Oxidation (M))|F} 4.4752 - 334 + NaN NaN 122395.5 NaN 15902 3750 19651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19655 80.628 NaN 249100 35 0 28759 0.261 + 33611 YISKAEEYF 9 83 575.2771885876818 1148.5398242421636 2 575.29443359375 MULTI HCD FTMS 0 0 0 19651 33540.49609375 0.30562365490050464 8 -0.21306610107421875 4 Unmodified _YISKAEEYF_ ENSG00000135902|ENST00000258385|CHRND;nc|ENSG00000135902|Q07001-2|CHRND 13.50788311687929 0.24365122550260465 1 [Y{I|L}]S[VG]T{I|L}SY{M(Oxidation (M))|F} 10 5 + 48.567 0 0 4.2286 4.2286 82.376 0 0 0 12.821290465856308 2.2362865499946594 2.2362865499946594 4.771212547196626 0 0 2 0.3494850021680094 0 [Y{I|L}]S[VG]T{I|L}SY{M(Oxidation (M))|F};[Y{I|L}]V[SG]T{I|L}SY{M(Oxidation (M))|F};[Y{I|L}]ST[VG]{I|L}SY{M(Oxidation (M))|F};[Y{I|L}]SRT{[{M(Oxidation (M))|F}D]|MM}T{M(Oxidation (M))|F};[Y{I|L}]STR{[{M(Oxidation (M))|F}D]|MM}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}RT{I|L}SY{M(Oxidation (M))|F};[Y{I|L}]S[VG]T{[{M(Oxidation (M))|F}D]|MM}T{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{I|L}SY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}TR{I|L}SY{M(Oxidation (M))|F};[Y{I|L}]V[SG]T{[{M(Oxidation (M))|F}D]|MM}T{M(Oxidation (M))|F} 4.2286;3.8131;3.7373;3.6598;3.1685;3.0268;2.8581;2.7765;2.5356;2.4427 -;-;-;-;-;-;-;-;-;- 1080 NaN NaN 125982.6 NaN 15903 3750 19651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19656 80.631 NaN 47800 35 0 5541.9 0.263 + 29116 TYHPEFPLGTF 11 35 436.87938167274297 NaN 0 436.879638671875 PEAK HCD FTMS 0 0 0 19651 13459.939453125 0.49978145631247506 -2 0.05572509765625 5 Unmodified _TYHPEFPLGTF_ COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant;ENSG00000206384|ENST00000358511|COL6A6;nc|ENSG00000206384|A6NMZ7-2|COL6A6 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102130.9 NaN 15904 3750 19651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19658 80.636 NaN 594890 35 0 59501 0.327 + 29137 TYIKFINLF 9 79 579.8315935249233 1157.6486341166465 2 579.8319702148438 MULTI HCD FTMS 0 0 0 19657 264265.46875 0.3097385990012907 10 -0.28047943115234375 1 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 74.19965305603844 0.007729275404663812 1 [YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 2 + 97.546 0 0 8.4262 8.4262 88.259 0 0 0 4.673917382120706 4.673917382120706 4.673917382120706 2.103845573120097 0 1.274227503252014 2 0.6694451763165201 0.6505149978319906 [YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[K{I|L}][YT]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[K{I|L}]{I|L}[YT]{M(Oxidation (M))|F} 8.4262;8.2445;7.6308;7.449;5.3716;5.023;3.1903;2.6074 -;+;-;-;-;-;-;- + 359 NaN NaN 178658.9 NaN 15905 3751 19657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19659 80.64 NaN 834010 35 0 95772 0.261 + 26130 SPMDIFDMF 9 98 567.7277065428732 1133.4408601525463 2 567.72802734375 MULTI HCD FTMS 0 0 0 19657 336196.90625 1 0 0 2 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 45.235 0 0 3.991 0 0 559.2312720191733 0 559.2312720191733 0 29.03720958383822 0 0 0 1.2059771852360797 0 0.4247425010840047 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.991 + + 1186 + NaN NaN 223933.8 NaN 15906 3751 19657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19660 80.644 NaN 124070 35 0 5165.4 0.262 -1 0 63 479.2774935703601 956.5404342075202 2 479.2773742675781 MULTI HCD FTMS 0 0 0 19657 109032.359375 0.10213167926775522 67 -1.910888671875 3 NaN NaN 1 V 1 -1 8.4113 0 0 0.87935 0 0 586.320110576464 268.1243075006469 854.4444180771109 0 0 0 0 0 0.3807196863200844 0 0 0 V 0.87935 - 23 + NaN NaN 94054.1 NaN 15907 3751 19657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19661 80.647 NaN 115900 35 0 10517 0.261 -1 0 51 404.2327122446908 806.4508715561816 2 404.2331848144531 MULTI HCD FTMS 0 0 0 19657 70402.96875 0.03051483320272611 13 -0.37575531005859375 4 NaN NaN 1 R[{M(Oxidation (M))|F}V] 3 -1 2.9318 0 0 0.36355 0 0 386.19456679511876 0 386.19456679511876 0 0.9421249706470309 0 0 0 0 0 0 0 R[{M(Oxidation (M))|F}V] 0.36355 - 13 NaN NaN 91667.1 NaN 15908 3751 19657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19662 80.651 NaN 125710 35 0 16857 0.261 + 24222 RYFLPPYTF 9 43 602.3135266082954 1202.6125002833908 2 602.3126831054688 MULTI HCD FTMS 0 0 0 19657 34959.1875 0.4827270014647587 16 -0.46429443359375 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.042465956692817 0.2476723265019929 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YR]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 9 3 + 26.36 0 0 2.1919 2.1919 82.279 0 0 0 0.3913622748569203 18.13363730737706 0.3913622748569203 8.010299956639813 0 0.9247425010840047 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YR]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YR]P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F} 2.1919;1.5259 -;- 42 NaN NaN 104166 NaN 15909 3751 19657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19663 80.654 NaN 85852 35 0 12489 0.264 + -1 VTVKEAVL 8 41 450.77332468417364 899.5320964351473 2 450.77313232421875 MULTI HCD FTMS 0 0 0 19657 67007.4375 0.05208334041788938 16 -0.46429443359375 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VTVKEAVL_ REV__ENSG00000080824|ENST00000216281|HSP90AA1;REV__HSP90AA1|p.S140F|1|0.24|ENSG00000080824|chr14:102085868-102085868|G/A|missense_variant;REV__nc|ENSG00000080824|P07900-2|HSP90AA1;REV__nc|ENSG00000224411|Q14568|HSP90AA2P 2.302733041254933 0.5385759549224092 1 M 1 -1 5.4846 0 0 0.60971 0 0 467.2874197767473 298.1778963678344 765.4653161445817 0 0 0 0 0 0.5 0 0 0 M 0.60971 - 2 + NaN NaN 102707.2 NaN 15910 3751 19657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19665 80.659 NaN 1605900 35 0 330050 0.327 + 17609 LYYDAIWHF 9 95 614.2951260546212 1226.5756991760422 2 614.295654296875 MULTI HCD FTMS 0 0 0 19664 915415.5 0.039983534260949596 17 -0.5039215087890625 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 104.79918948944588 0.003791450360204016 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 93.963 0 0 7.6606 7.6606 87.611 0 0 0 3.4518784026556517 3.4518784026556517 3.4518784026556517 3.4518784026556517 0 2.822682509756042 2 0.6861818737241735 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]YDAWH{I|L}{M(Oxidation (M))|F};[Y{I|L}]YDAWH{M(Oxidation (M))|F}{I|L};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}KH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};{I|L}YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}D{I|L}H{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{[DA]|[EG]}{I|L}H{M(Oxidation (M))|F} 7.6606;7.3791;6.398;5.8063;5.4173;5.2956;5.2438;5.1533;4.9043;4.5117 +;+;-;-;-;-;-;-;-;- + 3971 + NaN NaN 336652.4 NaN 15911 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19666 80.663 NaN 820910 35 0 120480 0.261 -1 0 78 566.2978883914894 1130.5812238497788 2 566.2984008789062 MULTI HCD FTMS 0 0 0 19664 280764.1875 0.5895711421346529 13 -0.37903594970703125 2 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 57.444 0 0 5.081 0 0 291.15825087715 0 291.15825087715 0 4.137867533881362 0 0 0 2.6861818737241734 0 0.6382104921644451 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.081 - 777 NaN NaN 224197.5 NaN 15912 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19667 80.667 NaN 230230 35 0 37257 0.261 + 18683 MYPAIFDQL 9 55 557.267804568391 1112.521056203582 2 557.2684936523438 MULTI HCD FTMS 0 0 0 19664 95876.53125 0.6331538669337372 3 -0.08519744873046875 3 Oxidation (M) _M(Oxidation (M))YPAIFDQL_ ENSG00000061987|ENST00000393630|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2 41.8396318013385 0.056899836730939755 1 {I|L}{M(Oxidation (M))|F}DQ{I|L} 5 4 49.821 0 0 4.4782 0 0 478.1886463849625 0 478.1886463849625 0 31.237125054200234 0 0 0 1.4247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}DQ{I|L} 4.4782 + + 98 NaN NaN 121078.7 NaN 15913 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19668 80.67 NaN 278910 35 0 85921 0.261 + -1 VIKIMTIVF 9 56 540.3301319162077 1078.6457108992154 2 540.3305053710938 MULTI HCD FTMS 0 0 0 19664 33915.703125 0.32263765560419616 -1 0.022918701171875 4 Oxidation (M) _VIKIM(Oxidation (M))TIVF_ REV__ENSG00000112759|ENST00000371755|SLC29A1;REV__ENST00000472176.1_1_6:44197340-44197857:+|nuORF;REV__nc|ENSG00000112759|Q99808-2|SLC29A1 0.5247636613948944 0.34703895399870666 1 {I|L}T 2 -1 9.464 0 0 0.87739 0 0 132.21097076425286 729.2937716119749 861.5047423762278 0 0 0 0 0 0 0 0 0 {I|L}T 0.87739 - 39 + NaN NaN 125134.5 NaN 15914 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19669 80.674 NaN 327850 35 0 51384 0.261 + -1 EEEQMKNEDS 10 57 627.7437459421893 1253.4729389511785 2 627.7440795898438 MULTI HCD FTMS 0 0 0 19664 66489.484375 0.6825066615470572 1 -0.032806396484375 5 Oxidation (M) _EEEQM(Oxidation (M))KNEDS_ REV__ENSG00000181222|ENST00000674977|POLR2A;REV__nc|ENSG00000181222|P24928|POLR2A 8.155526934196011 0.43213520406898465 1 [YE]AD{I|L}{M(Oxidation (M))|F} 6 -1 41.336 0 0 3.2977 0 0 0 512.1289156549436 512.1289156549436 11.212600430434701 0 0 0 0 0.9731975075880328 1.3979400086720375 0 0 [YE]AD{I|L}{M(Oxidation (M))|F} 3.2977 - 186 + NaN NaN 136115.9 NaN 15915 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19670 80.677 NaN 242590 35 0 37075 0.261 + 19922 NYFPFQWKL 9 70 621.8170285860915 1241.619504238983 2 622.31640625 MULTI HCD FTMS 0 0 0 19664 38984.26953125 0.10329230733945372 22 -0.6449966430664062 6 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 15.847184025352803 0.2234401846867398 1 [YN]{M(Oxidation (M))|F} 3 6 34.423 0 0 2.7725 0 0 0 814.4227543335618 814.4227543335618 8.737125054200234 0 0 0 0 0.75 1.5228787452803376 0 0.2742275032520141 + [YN]{M(Oxidation (M))|F} 2.7725 + + 394 NaN NaN 135663.5 NaN 15916 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19671 80.68 NaN 184170 35 0 10776 0.262 + -1 ASIVLMGAFV 10 63 512.2814807207097 1022.5484085082195 2 512.2826538085938 MULTI HCD FTMS 0 0 0 19664 67650.609375 0.5407919803230233 -9 0.23920440673828125 7 Oxidation (M) _ASIVLM(Oxidation (M))GAFV_ REV__ENSG00000256870|ENST00000536262|SLC5A8 7.289230182591677 0.43672065049472153 1 PPN 3 -1 5.6864 0 0 0.5561 0 0 696.3849696427882 0 696.3849696427882 0 1.0822685886482493 0 0 0 0.3494850021680094 0 0 0 PPN 0.5561 - 94 + NaN NaN 131620.6 NaN 15917 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19672 80.684 NaN 119250 35 0 17567 0.261 + 16771 LYDLWEFY 8 50 574.76756321513 NaN 0 574.7493896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LYDLWEFY_ ENSG00000105983|ENST00000353442|LMBR1;ENST00000434503.5_1_7:156480878-156685794:-|nuORF;nc|ENSG00000105983|Q8WVP7-2|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 6.354104778181461 0.38822285293237185 1 Y 1 7 6.9897 0 0 0.60911 0 0 113.10878258084752 868.312121878657 981.4209044595045 0 0 0 0 0 0 0 0 0 + Y 0.60911 + + 3 + NaN NaN 100738.1 NaN 15918 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19673 80.687 NaN 106960 35 0 11543 0.261 + 31325 VWSTFSATL 9 47 506.2609204025604 1010.5072878719208 2 506.26104736328125 MULTI HCD FTMS 0 0 0 19664 59424.5625 0.5406960973260141 4 -0.11138916015625 9 Unmodified _VWSTFSATL_ REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF 7.289230182591677 0.29575926068275815 1 S{I|L} 2 -1 19.693 0 0 1.9488 0 0 792.3801136701187 0 792.3801136701187 0 17.474250108400465 0 0 0 0.5 0 0 0 S{I|L} 1.9488 - 5 NaN NaN 97185 NaN 15919 3752 19664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19675 80.692 NaN 1059000 35 0 143620 0.327 + 15359 LPDEEIFQQL 10 86 616.313992041861 1230.6134311505218 2 616.2994995117188 MULTI HCD FTMS 0 0 0 19674 96651.015625 0.08509451092245685 -5 0.131072998046875 1 Unmodified _LPDEEIFQQL_ ENSG00000169019|ENST00000381571|COMMD8 41.95555342248728 0.12843670176738353 1 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 9 70.05 0 0 5.6923 0 0 0 128.0959375418553 128.0959375418553 13.610652390664555 0 0 0 0 0 1.5228787452803376 2.753083433768431 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6923 - 3376 NaN NaN 250559.5 NaN 15920 3753 19674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19676 80.696 NaN 2039100 35 0 166580 0.261 + 15146 LMSLIINTF 9 109 534.2939126633656 1066.5732723935312 2 534.2942504882812 MULTI HCD FTMS 0 0 0 19674 697696.4375 0.3895426158978251 -4 0.108154296875 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 134.295615338601 0.00034446139420701925 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 80.601 0 0 7.557 7.557 92.242 0 0 0 4.762036441594191 16.773423099081356 4.762036441594191 11.95046257204389 0 2.774227503252014 0 1.805462187404089 0.2742275032520141 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KSEM;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[QT]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}KA{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}SEM;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}A{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}SEM;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}{[CP]|[EA]}{M(Oxidation (M))|F} 7.557;6.4365;4.9163;4.5588;4.2024;3.5494;3.3939;3.3736;3.2181;3.0365 +;-;-;-;-;-;-;-;-;- + 4826 NaN NaN 385065.5 NaN 15921 3753 19674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19677 80.7 NaN 668070 35 0 59419 0.261 + 11817 KELQKGPFV 9 104 523.3037906164145 NaN 0 523.3037109375 PEAK HCD FTMS 0 0 0 19674 398987.75 0.6900451872410359 -4 0.108154296875 3 Unmodified _KELQKGPFV_ REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF 10.073929032068715 0.24642998803896465 1 A{I|L} 2 -1 6.4537 0 0 0.61781 0 0 165.1229889842195 692.3253878229124 857.4483768071318 0 0 0 0 0 0 0 0 0 A{I|L} 0.61781 - 51 + NaN NaN 178509.7 NaN 15922 3753 19674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19678 80.703 NaN 342470 35 0 31983 0.261 -1 TYNMVLNLL 9 84 548.7893167370247 NaN 0 548.7892456054688 PEAK HCD FTMS 0 0 0 19674 64115.99609375 0.4927585897367772 6 -0.167266845703125 4 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 38.175570920033316 0.08412639609110066 1 N{I|L} 2 -1 27.747 0 0 2.5327 0 0 244.17854506660314 621.2350149493055 865.4135600159086 0 0 0 0 0 1.5 0 0 0.6549471895720984 N{I|L} 2.5327 + + 138 NaN NaN 133118.8 NaN 15923 3753 19674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19679 80.706 NaN 274160 35 0 27938 0.261 + -1 VTIMLSCTF 9 74 544.2594235622489 1086.5042941912977 2 545.284912109375 MULTI HCD FTMS 0 0 0 19674 6460.8916015625 0.24775793578125604 -3 0.075347900390625 5 Carbamidomethyl (C),Oxidation (M) _VTIM(Oxidation (M))LSC(Carbamidomethyl (C))TF_ REV__ENSG00000165071|ENST00000677595|TMEM71;REV__nc|ENSG00000165071|Q6P5X7-2|TMEM71;REV__nc|ENSG00000165071|Q6P5X7-3|TMEM71 16.942295170755138 0.21397866736869717 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}AP{I|L}S{M(Oxidation (M))|F} 9 -1 39.473 0 0 3.633 0 0 0 108.01104402944148 108.01104402944148 25.493493689375846 0 0 0 0 0.2742275032520141 0 1.1747425010840047 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}AP{I|L}S{M(Oxidation (M))|F} 3.633 - 287 NaN NaN 132779.4 NaN 15924 3753 19674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19680 80.71 NaN 140920 35 0 5582.4 0.261 + -1 TEEQCKFL 8 68 527.7464861239258 1053.4784193146515 2 527.7466430664062 MULTI HCD FTMS 0 0 0 19674 34172.30078125 0.5397803538441964 -4 0.108154296875 6 Carbamidomethyl (C) _TEEQC(Carbamidomethyl (C))KFL_ REV__ENSG00000136848|ENST00000408936|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;REV__nc|ENSG00000136848|Q5VWQ8-5|DAB2IP 4.3292370932331545 0.5355693454741696 1 QVQ 3 -1 14.693 0 0 1.3947 0 0 132.00978256507625 563.2721041315061 695.2818866965824 0 0 0 0 0 0 0 0 0 QVQ 1.3947 - 47 + NaN NaN 119673 NaN 15925 3753 19674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19682 80.715 NaN 637850 35 0 75214 0.327 + 13446 KYPENFFLL 9 80 585.8132425088911 1169.6119320845821 2 585.8135375976562 MULTI HCD FTMS 0 0 0 19681 354208.65625 0.001786597398198718 187 -4.73004150390625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.009787749748478139 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 77.162 0 0 6.5972 6.5972 89.043 0 0 0 6.544679743697998 51.183378834554944 6.544679743697998 9.208187539523749 0 2.412437995416459 0 0 1.4163865622122673 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.5972;5.81;5.3396;4.5523;4.2043;3.417 +;-;-;-;-;- + 888 NaN NaN 180468.1 NaN 15926 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19683 80.719 NaN 575090 35 0 100440 0.261 + 11084 IYGYTFYSI 9 66 563.7756219205577 1125.5366909079153 2 563.7584838867188 MULTI HCD FTMS 0 0 0 19681 8467.169921875 0.05059108084581666 13 -0.38568878173828125 2 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 46.020951573049366 0.037705236580089195 1 STA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 7 8 43.369 0 0 3.8532 0 0 276.1851416909215 0 276.1851416909215 0 -2.627108334148005 -2.627108334148005 0 0 0 0 0.6694451763165201 0 STA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 3.8532 - 779 + NaN NaN 172539 NaN 15927 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19684 80.723 NaN 951010 35 0 231280 0.261 + -1 MLKMDLPEF 9 98 570.2773566216824 1138.5401603101648 2 570.7901611328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _MLKM(Oxidation (M))DLPEF_ REV__ENSG00000166508|ENST00000303887|MCM7;REV__nc|ENSG00000166508|P33993-3|MCM7 12.531546534597751 0.2520865569484384 1 [YE]V[NS]GRAP{M(Oxidation (M))|F} 10 -1 + 47.585 0 0 4.1795 4.1795 81.744 0 0 0 10.496564180281261 0.16711877743475156 0.16711877743475156 3.521825181113627 0 0 0 0.5189301784845296 0 [YE]V[NS]GRAP{M(Oxidation (M))|F};[YV]AGVEEVHH;[YE]VP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GAP{M(Oxidation (M))|F};[YV]AGVG[NS]N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]QVEEVHH;[YE]VP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QP{M(Oxidation (M))|F};[YV]QVG[NS]N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]AR[WM][WQ];[YV]AREEN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]AGVG[NS]GG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.1795;3.8702;3.7604;3.6316;3.2964;3.1867;3.054;2.9551;2.8994;2.8298 -;-;-;-;-;-;-;-;-;- 2329 + NaN NaN 231293.9 NaN 15928 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19685 80.726 NaN 690680 35 0 41535 0.261 + 383 AIPFSFIVF 9 94 520.794505837696 1039.5744587421918 2 520.7944946289062 MULTI HCD FTMS 0 0 0 19681 39936.23828125 0.2967157141474018 1 -0.029510498046875 4 Unmodified _AIPFSFIVF_ REV__ENSG00000109501|ENST00000226760|WFS1;REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F} 1 -1 18.099 0 0 1.741 0 0 874.4957061560575 0 874.4957061560575 0 9.426806100157561 0 0 0 0.2614393726401688 0 0 0 {M(Oxidation (M))|F} 1.741 + + 799 + NaN NaN 198777.9 NaN 15929 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19686 80.729 NaN 198070 35 0 45349 0.261 + 34621 YPPVQVLF 8 36 481.7707537869351 961.5269546406702 2 481.7710266113281 MULTI HCD FTMS 0 0 0 19681 118660.359375 1 0 0 5 Unmodified _YPPVQVLF_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 26.34127834903884 0.3999841173197873 1 QV{I|L}{M(Oxidation (M))|F} 4 4 42.691 0 0 4.4399 0 0 456.2293873517594 0 456.2293873517594 0 38.7113751626007 0 0 0 1.4247425010840047 0 0 0 + QV{I|L}{M(Oxidation (M))|F} 4.4399 + + 42 NaN NaN 111912.4 NaN 15930 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19687 80.733 NaN 288410 35 0 79838 0.261 + 33894 YLNQRLQFN 9 59 598.3170273033153 NaN 0 598.3031616210938 PEAK HCD FTMS 0 0 0 19681 22012.732421875 1 0 0 6 Unmodified _YLNQRLQFN_ REV__ENSG00000168237|ENST00000436784|GLYCTK;REV__nc|ENSG00000168237|Q8IVS8-2|GLYCTK;REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK;REV__nc|ENSG00000168237|Q8IVS8-4|GLYCTK;REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK 7.289230182591677 0.2599242500475609 1 T{I|L}V 3 -1 10.846 0 0 0.90793 0 0 166.07831622596797 712.3178194635374 878.3961356895054 0 0 0 0 0 0.3054621874040891 0 0 0 T{I|L}V 0.90793 - 46 + NaN NaN 132795.4 NaN 15931 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19688 80.736 NaN 88136 35 0 6420.8 0.262 + 33138 YEFQKPSL 8 43 506.2609204025604 1010.5072878719208 2 506.2588195800781 MULTI HCD FTMS 0 0 0 19681 18591.666015625 0.1691630671649812 6 -0.17566680908203125 7 Unmodified _YEFQKPSL_ ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21-2|SERINC4;nc|ENSG00000184716|A6NH21|SERINC4 7.289230182591677 0.5311777711368266 1 S{I|L} 2 6 20.445 0 0 2.0233 0 0 792.3810728988327 0 792.3810728988327 0 15.841218823962109 0 0 0 0.4247425010840047 0 0 0 + S{I|L} 2.0233 + + 18 NaN NaN 97296 NaN 15932 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19689 80.739 NaN 192670 35 0 49128 0.261 + 15705 LPESIGALL 9 50 456.7733271465392 911.5321013598784 2 456.77374267578125 MULTI HCD FTMS 0 0 0 19681 54188.44921875 0.3268400380703544 -3 0.07860565185546875 8 Unmodified _LPESIGALL_ ENSG00000137269|ENST00000370888|LRRC1 54.773552608820026 0.024892918755467567 1 S{I|L}GA{I|L}{I|L} 6 3 58.665 0 0 6.4359 0 0 339.1799488751969 0 339.1799488751969 0 41.67525978212623 0 0 0 2.079689690656103 0 0.4247425010840047 0 + S{I|L}GA{I|L}{I|L} 6.4359 + + 83 NaN NaN 110537.1 NaN 15933 3754 19681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19691 80.744 NaN 1186100 35 0 67371 0.327 + 16555 LTTTRRAVT 9 109 509.8036971120352 1017.5928412908704 2 509.8039245605469 MULTI HCD FTMS 0 0 0 19690 826365.9375 0.979155286755976 -9 0.24251556396484375 1 Unmodified _LTTTRRAVT_ ENSG00000120594|ENST00000377252|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;nc|ENSG00000120594|Q6UX71-3|PLXDC2 4.3292370932331545 0.3181982124262546 1 M 1 9 11.783 0 0 1.1579 0 0 868.5413866783689 0 868.5413866783689 0 2.4999999999999982 0 0 0 0 0 0 0 M 1.1579 - 616 + NaN NaN 266747.2 NaN 15934 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19692 80.749 NaN 369500 35 0 14957 0.261 -1 0 95 531.8170912349951 1061.6196295367902 2 531.8173828125 MULTI HCD FTMS 0 0 0 19690 323470.71875 0.9693001266796668 -2 0.05239105224609375 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2712 0 0 896.5404954809293 0 896.5404954809293 0 7.98836514587105 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2712 - 69 + NaN NaN 135046.6 NaN 15935 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19693 80.752 NaN 701860 35 0 122830 0.261 + 33634 YIVTARGPPF 10 88 560.8103436324925 1119.606134331785 2 560.8295288085938 MULTI HCD FTMS 0 0 0 19690 9077.171875 0.24865007034946388 -1 0.029510498046875 3 Unmodified _YIVTARGPPF_ REV__ADGRV1|p.I1126Nfs*11|1|0.23|ENSG00000164199|chr5:90651689-90651690|-/A|frameshift_variant;REV__ENSG00000164199|ENST00000405460|ADGRV1;REV__nc|ENSG00000164199|Q8WXG9-3|ADGRV1;REV__nc|ENSG00000164199|Q8WXG9-4|ADGRV1 20.453626601364224 0.3197956946484955 1 {I|L}N{I|L}PT{M(Oxidation (M))|F} 6 -1 45.108 0 0 4.029 0 0 416.21857437260365 0 416.21857437260365 0 12.159313453882952 0 0 0 0.7742275032520141 0 1.0021934810768762 0 {I|L}N{I|L}PT{M(Oxidation (M))|F} 4.029 - 1074 + NaN NaN 186661.8 NaN 15936 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19694 80.756 NaN 370220 35 0 52899 0.261 + 4879 FAFEGIGDEDL 11 55 606.7744324431411 1211.5343119530821 2 606.775146484375 MULTI HCD FTMS 0 0 0 19690 154021.625 0.6586639365173463 4 -0.11487579345703125 4 Unmodified _FAFEGIGDEDL_ ENSG00000115234|ENST00000233575|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17 53.40400417844725 0.06744007266772457 1 EG{I|L}GDED{I|L} 8 3 56.953 0 0 4.7009 0 0 365.1736012189469 0 365.1736012189469 0 46.49563049616694 0 0 0 1.8494850021680094 0 0.7134679910804405 0 + EG{I|L}GDED{I|L} 4.7009 + + 195 NaN NaN 134320 NaN 15937 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19695 80.759 NaN 124540 35 0 15598 0.262 + 16206 LPVSEVASIL 10 46 514.3051388406199 1026.5957247480396 2 514.3054809570312 MULTI HCD FTMS 0 0 0 19690 42132.48046875 0.5979227315427736 1 -0.02619171142578125 5 Unmodified _LPVSEVASIL_ ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1 21.536976647645854 0.3096624038397699 1 VAS{I|L}{I|L} 5 5 45.745 0 0 4.456 0 0 525.2803822248062 0 525.2803822248062 0 24.776296993281406 0 0 0 0.805462187404089 0 0.4247425010840047 0 + VAS{I|L}{I|L} 4.456 + + 38 NaN NaN 114627 NaN 15938 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19696 80.762 NaN 142000 35 0 16854 0.261 -1 LLYSVPETVC 10 57 590.797912182217 1179.581271431234 2 590.7971801757812 MULTI HCD FTMS 0 0 0 19690 29018.32421875 0.6064710846005614 1 -0.02619171142578125 6 Carbamidomethyl (C) _LLYSVPETVC(Carbamidomethyl (C))_ ENST00000320892.10_1_2:7137113-7154601:+|nuORF 9.38312468134398 0.42334543440173333 1 T{M(Oxidation (M))|F}[QT]N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7 -1 13.746 0 0 1.1653 0 0 311.18577773261876 0 311.18577773261876 0 1.7559163393120514 0 0 0 0 0 0.8807196863200843 0 T{M(Oxidation (M))|F}[QT]N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.1653 - 96 NaN NaN 103969.6 NaN 15939 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19697 80.765 NaN 98391 35 0 7359.5 0.262 -1 IMIIWVLA 8 56 487.79078151675463 973.5670101003093 2 487.79095458984375 MULTI HCD FTMS 0 0 0 19690 59294.66015625 0.0955330320502512 71 -2.0327835083007812 7 Oxidation (M) _IM(Oxidation (M))IIWVLA_ ENSG00000056291|ENST00000308744|NPFFR2;ENST00000506359.1_1_4:73012322-73013526:+|nuORF;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2;NPFFR2|p.T494Pfs*15|1|0.33|ENSG00000056291|chr4:72147721-72147721|A/-|frameshift_variant 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3 -1 5.9421 0 0 0.61035 0 0 551.3654852973781 0 551.3654852973781 0 1.3380312008851565 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 0.61035 - 18 + NaN NaN 96721.9 NaN 15940 3755 19690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19699 80.77 NaN 1218200 35 0 59296 0.327 + 14841 LKEQKERA 8 100 501.2905065387472 1000.5664601442944 2 501.2908630371094 MULTI HCD FTMS 0 0 0 19698 1362854.625 0.9698732563169689 -4 0.11138916015625 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 1 Q 1 7 8.9794 0 0 0.89743 0 0 502.29883142180756 367.19754616296467 869.4963775847723 0 0 0 0 0 0.5 0 0 0 + Q 0.89743 + + 90 + NaN NaN 274765.6 NaN 15941 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19700 80.775 NaN 761720 35 0 169020 0.261 + 35172 YVITSVSWW 9 94 570.7896929712314 1139.5648330092627 2 570.8079223632812 MULTI HCD FTMS 0 0 0 19698 159563.46875 0.5910762384164346 2 -0.05913543701171875 2 Unmodified _YVITSVSWW_ EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant 18.13498045792455 0.20367413111508956 1 [YV]AGVG[NS]VK{M(Oxidation (M))|F} 11 8 + 56.407 0 0 4.9498 4.9498 82.747 0 0 0 12.940779552096622 24.29107306486454 12.940779552096622 3.1078983295313733 0 0.5 1.6989700043360187 0.6237125054200234 0 [YV]AGVG[NS]VK{M(Oxidation (M))|F};[YV]AREEVK{M(Oxidation (M))|F};[YV]AG[KG][DG]VK{M(Oxidation (M))|F};[YV]QVG[NS]VK{M(Oxidation (M))|F};[YV]AGV{[QN]|[E{I|L}]|[KN]}DK{M(Oxidation (M))|F};[YV]AGVG[KG]DK{M(Oxidation (M))|F};[YV]AR{[QN]|[E{I|L}]|[KN]}DK{M(Oxidation (M))|F};[YV]Q[KG][DG]VK{M(Oxidation (M))|F};[YV]AG[KG][VG]DK{M(Oxidation (M))|F};[YV]AGV{[QN]|[E{I|L}]|[KN]}SR{M(Oxidation (M))|F} 4.9498;4.6771;4.3611;3.934;3.887;3.8507;3.5779;3.3453;3.2619;2.9635 -;-;-;-;-;-;-;-;-;- 3274 NaN NaN 219033.1 NaN 15942 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19701 80.778 NaN 356920 35 0 32601 0.261 + 29138 TYIKFINLF 9 76 579.8315935249233 1157.6486341166465 2 579.8316650390625 MULTI HCD FTMS 0 0 0 19698 132343.671875 0.1551165337913602 15 -0.45166778564453125 3 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 65.47368725323818 0.010552856507075443 1 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 95.684 0 0 8.2654 8.2654 88.938 0 0 0 8.762874945799766 8.762874945799766 8.762874945799766 4.0359843160042175 0 2.079689690656103 2 0.4247425010840047 0.3807196863200844 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]K{M(Oxidation (M))|F}T{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F} 8.2654;7.9168;7.47;7.1213;6.597;5.856;5.8016;5.3173;5.1386;5.0606 +;-;-;-;-;-;-;-;-;- + 431 NaN NaN 148693.2 NaN 15943 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19702 80.782 NaN 242080 35 0 35044 0.261 + 34737 YPVSGCFDYL 10 68 582.2568618069739 1162.4991706807477 2 582.2579345703125 MULTI HCD FTMS 0 0 0 19698 78259.6953125 0.7468893964463176 5 -0.14617156982421875 4 Unmodified _YPVSGCFDYL_ DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1 24.020572477871973 0.2864316864133941 1 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L} 9 3 + 53.126 0 0 4.57 4.57 89.031 0 0 0 24.13734275855269 39.31417813229345 24.13734275855269 24.496009757278966 0 0.805462187404089 1.6989700043360187 0 0 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L};[YV]P[C(Carbamidomethyl (C))S][RH][MN] 4.57;2.4628 -;- 156 NaN NaN 140092.1 NaN 15944 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19703 80.785 NaN 353480 35 0 18745 0.261 -1 MPSLPEMMF 9 86 549.7365687884333 1097.4585846436664 2 549.7376098632812 MULTI HCD FTMS 0 0 0 19698 33930.33984375 0.4135299976776876 1 -0.0295562744140625 5 Oxidation (M) _MPSLPEM(Oxidation (M))MF_ ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL 15.847184025352803 0.2234401846867398 1 M{M(Oxidation (M))|F} 2 -1 25.573 0 0 2.3302 0 0 801.3384747017161 0 801.3384747017161 0 -1.8618187372417339 -1.8618187372417339 0 0 0.7614393726401688 0 0 0 M{M(Oxidation (M))|F} 2.3302 + + 263 NaN NaN 158185.5 NaN 15945 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19704 80.788 NaN 148490 35 0 14729 0.261 + 16781 LYDSETKNANS 11 54 621.2853467040056 1240.5561404748112 2 621.2860107421875 MULTI HCD FTMS 0 0 0 19698 58403.66796875 0.034346166276461775 21 -0.6188125610351562 6 Unmodified _LYDSETKNANS_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 13.614867670302875 0.33845562336951207 1 [Y{I|L}][DP]{I|L}ADY 8 7 50.099 0 0 4.0384 0 0 0 287.10578906337406 287.10578906337406 33.187587626244124 0 0 0 0 1.6989700043360187 2 0 0 [Y{I|L}][DP]{I|L}ADY 4.0384 - 255 NaN NaN 107877.9 NaN 15946 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19705 80.792 NaN 101760 35 0 25111 0.264 + -1 LVGMGLYEELY 11 39 434.8822830602109 NaN 0 434.8824462890625 PEAK HCD FTMS 0 0 0 19698 68630.1171875 0.7073766295968503 -108 3.1023178100585938 7 Oxidation (M) _LVGM(Oxidation (M))GLYEELY_ REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102441.4 NaN 15947 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19706 80.795 NaN 104360 35 0 10449 0.261 + 35592 YYIFIPSKF 9 39 589.3180975350526 1176.6216421369052 2 589.319091796875 MULTI HCD FTMS 0 0 0 19698 34066.75390625 0.5095242852652525 -9 0.24250030517578125 8 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1639198954644489 1 YY{I|L} 3 6 35.19 0 0 2.9907 0 0 0 734.3881576000489 734.3881576000489 17.230749808046326 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + YY{I|L} 2.9907 + + 8 NaN NaN 95067.2 NaN 15948 3756 19698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19708 80.8 NaN 1151800 35 0 229000 0.327 + 17610 LYYDAIWHF 9 86 614.2951260546212 1226.5756991760422 2 614.2957153320312 MULTI HCD FTMS 0 0 0 19707 765889.9375 0.033452554120121186 22 -0.6483383178710938 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 117.59872219059416 0.0017018906413822257 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 96.932 0 0 7.9027 7.9027 89.375 0 0 0 6.5789559350286595 6.5789559350286595 6.5789559350286595 6.5789559350286595 0 2.4247425010840047 2 1.187273075074786 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};{I|L}YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F};{I|L}YY[RP]{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YY[PG]V{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}[Y{I|L}]A{I|L}WH{M(Oxidation (M))|F} 7.9027;7.3663;6.0122;5.7673;5.4033;4.8394;4.5034;4.4566;4.4228;4.1881 +;+;-;-;-;-;-;-;-;- + 2790 NaN NaN 265319.3 NaN 15949 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19709 80.804 NaN 2067800 35 0 221970 0.261 + 15360 LPDEEIFQQL 10 98 616.313992041861 1230.6134311505218 2 616.314208984375 MULTI HCD FTMS 0 0 0 19707 1008895.125 0.8882621323610739 -1 0.0295562744140625 2 Unmodified _LPDEEIFQQL_ ENSG00000169019|ENST00000381571|COMMD8 117.76058876431921 4.161225987453182E-05 1 [VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L} 10 2 + 74.391 0 0 6.045 6.045 84.642 0 0 0 1.4659125070036083 25.5187030902718 1.4659125070036083 3.226825097560422 0 2.473197507588033 0 1.5044321917401078 0 [VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}QQ{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG][AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTM{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[YC]|[HE]}VVTM{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[YC]|[HE]}V{I|L}SM{I|L} 6.045;5.7828;5.3003;5.3003;5.0381;5.0381;4.5585;3.7841;3.2727;3.1296 -;-;-;-;-;-;-;-;-;- 8762 NaN NaN 405168.4 NaN 15950 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19710 80.808 NaN 397570 35 0 54246 0.261 + 20682 PFLPKPLFF 9 75 553.3256180311153 1104.6366831290304 2 553.3260498046875 MULTI HCD FTMS 0 0 0 19707 97659.9140625 0.696360499769764 2 -0.0591278076171875 3 Unmodified _PFLPKPLFF_ ENSG00000160208|ENST00000340648|RRP1B;nc|ENSG00000160208|Q14684-2|RRP1B 50.855029805455786 0.030374663808198754 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[KP][{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 58.407 0 0 5.2874 5.2874 84.21 0 0 0 24.13734275855269 33.83049621913237 24.13734275855269 5.0565842292838425 0 2.305462187404089 1.6989700043360187 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[KP][{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[KP]{M(Oxidation (M))|F}[{I|L}P]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[KP][YN]{[QV]|[N{I|L}]|[RA]|[KV]} 5.2874;4.8297;2.6333 +;-;- + 502 NaN NaN 144297.1 NaN 15951 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19711 80.811 NaN 226790 35 0 19080 0.261 + 7633 FYINSGTLQF 10 60 595.2981114266805 1188.581669920161 2 595.2980346679688 MULTI HCD FTMS 0 0 0 19707 71827.5 0.1338190022424266 9 -0.27758026123046875 4 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 69.33821966488729 0.018369488249132326 1 SM{I|L}Q{M(Oxidation (M))|F} 5 6 53.73 0 0 4.5205 0 0 564.2929554669937 0 564.2929554669937 0 44.548734808312034 0 0 0 1.3737125054200234 0 0.4247425010840047 0.3807196863200844 SM{I|L}Q{M(Oxidation (M))|F} 4.5205 - 206 NaN NaN 125556.4 NaN 15952 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19712 80.815 NaN 202350 35 0 31644 0.261 -1 MPLSEDFVWM 10 58 643.7752277468494 1285.5359025604987 2 643.7755126953125 MULTI HCD FTMS 0 0 0 19707 109729.65625 1 0 0 5 2 Oxidation (M) _M(Oxidation (M))PLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 20.453626601364224 0.3197956946484955 1 VW{M(Oxidation (M))|F} 3 -1 35.445 0 0 2.7572 0 0 835.3409901349625 0 835.3409901349625 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 VW{M(Oxidation (M))|F} 2.7572 + + 21 NaN NaN 108759.5 NaN 15953 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19713 80.818 NaN 91807 35 0 6340.2 0.264 + 3656 ELKQVQGR 8 51 479.2774935703601 956.5404342075202 2 479.2772216796875 MULTI HCD FTMS 0 0 0 19707 60538.6171875 0.05670711584477407 73 -2.0886306762695312 6 Unmodified _ELKQVQGR_ REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant;REV__ENSG00000180777|ENST00000690538|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B 4.3292370932331545 0.5355693454741696 1 V 1 -1 6.9061 0 0 0.72199 0 0 630.346477763964 224.09742151431877 854.4438992782827 0 0 0 0 0 0.3807196863200844 0 0 0 V 0.72199 + + 17 + NaN NaN 92980.7 NaN 15954 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19714 80.821 NaN 138280 35 0 20208 0.261 + 24223 RYFLPPYTF 9 42 602.3135266082954 1202.6125002833908 2 602.3139038085938 MULTI HCD FTMS 0 0 0 19707 46553.5234375 0.6428250878715 22 -0.6483383178710938 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 22.736283301280096 0.1639198954644489 1 {I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 6 3 30.507 0 0 2.5367 0 0 466.2329579084 0 466.2329579084 0 23.517281225732418 0 0 0 0.9247425010840047 0 0 0 + {I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.5367 + + 34 NaN NaN 104136.7 NaN 15955 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19715 80.825 NaN 149530 35 0 23081 0.262 + 25150 SAIIFETPL 9 47 495.77824443286687 989.5419359325338 2 495.7791442871094 MULTI HCD FTMS 0 0 0 19707 81579.828125 1 0 0 8 Unmodified _SAIIFETPL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 29.081581746732265 0.1154664336125038 1 {I|L}{M(Oxidation (M))|F}ET[{I|L}P] 6 3 42.268 0 0 4.2715 0 0 271.15281874824376 0 271.15281874824376 0 33.68440000316717 0 0 0 1.6861818737241734 0 0 0 + {I|L}{M(Oxidation (M))|F}ET[{I|L}P] 4.2715 + + 70 NaN NaN 102912.5 NaN 15956 3757 19707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19717 80.83 NaN 1152500 35 0 269340 0.327 + 21549 PYLLISTQI 9 88 524.3075485468023 1046.6005441604045 2 524.3079833984375 MULTI HCD FTMS 0 0 0 19716 467989.9375 0.4958773678438202 1 -0.02954864501953125 1 Unmodified _PYLLISTQI_ ENSG00000137880|ENST00000260447|GCHFR;nc|ENSG00000137880|P30047-2|GCHFR 66.45667989310934 0.010234776021261575 1 {I|L}{I|L}STQ{I|L} 6 3 58.82 0 0 5.6201 0 0 373.19772541216076 0 373.19772541216076 0 47.87750146795573 0 0 0 2.4604093769761874 0 0.7302046884880937 0.7783773187068795 + {I|L}{I|L}STQ{I|L} 5.6201 + + 459 + NaN NaN 269816.6 NaN 15957 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19718 80.834 NaN 751000 35 0 116440 0.261 -1 0 87 566.2978883914894 1130.5812238497788 2 566.2982177734375 MULTI HCD FTMS 0 0 0 19716 272237.21875 0.5716655297784331 19 -0.5596771240234375 2 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 58.969 0 0 5.2158 0 0 291.15823717472057 0 291.15823717472057 0 26.867194008799522 0 0 0 2.586696871556164 0 0.5891368308784531 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2158 - 1520 NaN NaN 200728.1 NaN 15958 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19719 80.838 NaN 764900 35 0 140540 0.261 + 28617 TQRGALFLLF 10 76 583.3398171601634 1164.6650813871267 2 583.340576171875 MULTI HCD FTMS 0 0 0 19716 276296.09375 0.42207168827816033 -4 0.114837646484375 3 Unmodified _TQRGALFLLF_ ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF 57.24910588100465 0.05142613675551719 1 [QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 74.975 0 0 6.4374 6.4374 86.06 0 0 0 12.147642715192504 45.28180479789823 12.147642715192504 4.771212547196626 0 2.25 0 0.8494850021680094 0.28872548999643577 [QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]R{I|L}Q{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]R[AG]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]R{I|L}[AG]{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[QT]R{I|L}Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[QT]R[AG]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[QT]R{I|L}[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[QT]RQ{I|L}{I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}Q[R{I|L}][QT]{M(Oxidation (M))|F} 6.4374;6.0278;5.6468;5.2371;5.1911;4.7815;4.4005;3.9908;3.2051;2.888 -;-;+;-;-;-;-;-;-;- + 388 NaN NaN 215733.1 NaN 15959 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19720 80.841 NaN 221560 35 0 12306 0.261 + 1767 CLLSTLQFV 9 71 512.2814807207097 1022.5484085082195 2 512.282470703125 MULTI HCD FTMS 0 0 0 19716 124870.125 0.9981988751588162 -3 0.0853271484375 4 Unmodified _CLLSTLQFV_ ENST00000468090.5_1_21:45180432-45180885:+|nuORF 7.289230182591677 0.29575926068275815 1 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}N 4 7 19.45 0 0 1.9022 0 0 559.3019886701187 0 559.3019886701187 0 16.686252728754987 0 0 0 0 0 0.3252574989159953 0 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}N 1.9022 - 50 NaN NaN 134603.8 NaN 15960 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19721 80.844 NaN 231410 35 0 44292 0.261 + 26450 STPAGEGPWVL 11 59 557.2817344191137 1112.5489159050273 2 557.2824096679688 MULTI HCD FTMS 0 0 0 19716 51098.3828125 0.5591611052706585 1 -0.02954864501953125 5 Unmodified _STPAGEGPWVL_ ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73843478-73843967:-|nuORF 12.240655878213236 0.35042917576941135 1 WV{I|L} 3 8 33.5 0 0 3.0111 0 0 696.3071766584 0 696.3071766584 0 16.510234424404686 0 0 0 0.8807196863200843 0 0 0 + WV{I|L} 3.0111 + + 69 NaN NaN 117525.1 NaN 15961 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19722 80.847 NaN 316070 35 0 37050 0.261 -1 LPCPQTFFFP 10 70 627.3046612980949 1252.5947696629896 2 627.3053588867188 MULTI HCD FTMS 0 0 0 19716 94422 0.9370020099852682 -2 0.05913543701171875 6 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))PQTFFFP_ ENST00000493504.1_1_19:59094431-59094902:+|nuORF 20.41453444215458 0.3201613495159799 1 {I|L}PDEE{I|L}{M(Oxidation (M))|F}Q 8 -1 62.076 0 0 4.9558 0 0 0 278.11127649478755 278.11127649478755 31.13412548780211 0 0 0 0 1.9208187539523751 0 0.3494850021680094 0.4247425010840047 {I|L}PDEE{I|L}{M(Oxidation (M))|F}Q 4.9558 - 466 + NaN NaN 128566 NaN 15962 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19723 80.851 NaN 77513 35 0 16497 0.264 -1 PPEMVGMI 8 37 453.20965087887174 NaN 0 453.209716796875 PEAK HCD FTMS 0 0 0 19716 24895.30859375 0.40731821827075454 23 -0.674468994140625 7 2 Oxidation (M) _PPEM(Oxidation (M))VGM(Oxidation (M))I_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87978.4 NaN 15963 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19724 80.854 NaN 78005 35 0 6222.2 0.261 + -1 LCHLVGCPL 9 49 506.2609204025604 1010.5072878719208 2 506.2616882324219 MULTI HCD FTMS 0 0 0 19716 32979.578125 0.30007674324309724 10 -0.30042266845703125 8 Carbamidomethyl (C) _LC(Carbamidomethyl (C))HLVGCPL_ REV__ENST00000328914.4_1_7:4804488-4804725:+|nuORF 5.230669730166228 0.3113646817964458 1 S{I|L} 2 -1 16.198 0 0 1.6029 0 0 792.3768788068375 0 792.3768788068375 0 7.614393726401687 0 0 0 0 0 0 0 S{I|L} 1.6029 - 6 NaN NaN 89001.5 NaN 15964 3758 19716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19726 80.859 NaN 2488900 35 0 301330 0.327 + 15147 LMSLIINTF 9 94 534.2939126633656 1066.5732723935312 2 534.2942504882812 MULTI HCD FTMS 0 0 0 19725 1428570.375 0.7976091190398789 2 -0.05748748779296875 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 189.77610602135977 4.071947121966932E-13 1 TT{[HG]|PP}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 4 89.792 0 0 8.4187 0 0 64.01332311085169 0 64.01332311085169 0 17.552973247674842 0 0 0 1.3807196863200843 0 2.603917193908117 1.3737125054200234 TT{[HG]|PP}{I|L}{I|L}NT{M(Oxidation (M))|F} 8.4187 - 2764 + NaN NaN 454442.9 NaN 15965 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19727 80.863 NaN 663120 35 0 90147 0.261 + 13447 KYPENFFLL 9 74 585.8132425088911 1169.6119320845821 2 585.8135986328125 MULTI HCD FTMS 0 0 0 19725 389961 0.0019669290846106202 192 -4.779899597167969 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 63.960520009940105 0.0120409805053046 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 75.652 0 0 6.4681 6.4681 88.773 0 0 0 9.282118526775136 50.87082789381242 9.282118526775136 9.208187539523749 0 2.1861818737241734 0 0 1.4916440611282626 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[EP][YK]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP][YK]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[EP][YK]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 6.4681;5.6809;5.3825;5.1093;4.5952;4.354;4.3221;4.0236;3.5667;3.2364 +;-;-;-;-;-;-;-;-;- + 357 NaN NaN 177183.6 NaN 15966 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19728 80.867 NaN 672390 35 0 140640 0.261 + 11048 IYFPYVLKI 9 70 578.3441619009734 1154.6737708687467 2 578.3446655273438 MULTI HCD FTMS 0 0 0 19725 303398.71875 0.6026083303654235 -3 0.08868408203125 3 Unmodified _IYFPYVLKI_ ENSG00000188921|ENST00000495827|HACD4 71.13359017698441 0.008721403657255008 1 {I|L}Y{M(Oxidation (M))|F}PYV{I|L}K{I|L} 9 0 + 76.768 0 0 6.6484 6.6484 94.34 0 0 0 69.77806275181898 12.26203644159419 12.26203644159419 63.91100584141732 0 2.3494850021680094 1.6989700043360187 0 0.3252574989159953 + + {I|L}Y{M(Oxidation (M))|F}PYV{I|L}K{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[{M(Oxidation (M))|F}E]V{I|L}K{I|L} 6.6484;1.1135 +;- + 108 + NaN NaN 188652.1 NaN 15967 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19729 80.87 NaN 454480 35 0 47607 0.261 + 9903 ICDALLISQN 10 88 545.2848858382271 1088.555218743254 2 545.2849731445312 MULTI HCD FTMS 0 0 0 19725 109687.140625 0.5474958495077161 2 -0.05748748779296875 4 Unmodified _ICDALLISQN_ ENSG00000166750|ENST00000299977|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant 53.40400417844725 0.06540992187319636 1 {I|L}{M(Oxidation (M))|F}S{I|L}{I|L}{I|L}N 7 5 61.535 0 0 5.6529 0 0 0 285.0856112115844 285.0856112115844 13.614808872075216 0 0 0 0 2.079689690656103 0 0.4247425010840047 0.3054621874040891 {I|L}{M(Oxidation (M))|F}S{I|L}{I|L}{I|L}N 5.6529 - 1513 + NaN NaN 149708.9 NaN 15968 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19730 80.875 NaN 485780 35 0 54167 0.261 + 11565 IYSTAFDYF 9 71 563.758422190533 1125.502291447866 2 563.7588500976562 MULTI HCD FTMS 0 0 0 19725 112317.6640625 0.041465431856576536 17 -0.50390625 5 Unmodified _IYSTAFDYF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1 107.99703571036002 0.003269392969029945 1 [Y{I|L}]STA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 9 0 + 91.186 0 0 8.1018 8.1018 93.163 0 0 0 12.218487496163561 11.505149978319906 11.505149978319906 12.218487496163561 0 2.579689690656103 1.3979400086720375 1.110924374808178 0 + + [Y{I|L}]STA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}TA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}T]{M(Oxidation (M))|F}DY{M(Oxidation (M))|F};[Y{I|L}]STAE{[QD]|[EN]|[WG]|[KD]|[RS]}{[CP]|[EA]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}TAEA[DG]S{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}TAE{[QD]|[EN]|[WG]|[KD]|[RS]}S{I|L};[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EA[DG]S{I|L};[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{[QD]|[EN]|[WG]|[KD]|[RS]}S{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[HV]T[MT]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[HV][{M(Oxidation (M))|F}V]S{I|L} 8.1018;7.0162;5.0041;3.6401;3.4923;3.332;2.8294;2.6729;2.4383;2.2173 +;-;-;-;-;-;-;-;-;- + 754 NaN NaN 152756.7 NaN 15969 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19731 80.879 NaN 224580 35 0 40526 0.261 + -1 YNLLKMPNPH 10 70 621.8170285860915 1241.619504238983 2 622.3168334960938 MULTI HCD FTMS 0 0 0 19725 57873.7578125 0.15334169527188224 29 -0.845184326171875 6 Oxidation (M) _YNLLKM(Oxidation (M))PNPH_ REV__ENSG00000105852|ENST00000265627|PON3;REV__ENST00000442770.5_1_7:94989287-95024046:-|nuORF 19.256988751693697 0.33098864134661865 1 [YN]{M(Oxidation (M))|F}N[WK]{I|L} 7 -1 38.561 0 0 3.1057 0 0 0 273.0822955778721 273.0822955778721 12.07789158229879 0 0 0 0 0.7742275032520141 1.6989700043360187 0 0.2614393726401688 [YN]{M(Oxidation (M))|F}N[WK]{I|L} 3.1057 - 245 NaN NaN 115195.5 NaN 15970 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19732 80.882 NaN 208300 35 0 86638 0.261 -1 MVLLKSFLL 9 51 540.3301319162077 1078.6457108992154 2 540.3307495117188 MULTI HCD FTMS 0 0 0 19725 32941.12109375 0.3133665265169535 6 -0.17896270751953125 7 Oxidation (M) _M(Oxidation (M))VLLKSFLL_ ENSG00000023839|ENST00000647814|ABCC2 2.0597508629832335 0.3354026079994024 1 {I|L} 1 -1 5.4846 0 0 0.50847 0 0 132.214703317251 830.3253878229124 962.5400911401634 0 0 0 0 0 0 0 0 0 {I|L} 0.50847 + + 21 + NaN NaN 108758.2 NaN 15971 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19733 80.885 NaN 291660 35 0 17213 0.261 -1 YSMAGVGAVLL 11 81 548.7893167370247 NaN 0 548.7890625 PEAK HCD FTMS 0 0 0 19725 36398.921875 0.2797411333177824 12 -0.36298370361328125 8 Oxidation (M) _YSM(Oxidation (M))AGVGAVLL_ nc|ENSG00000184716|A6NH21|SERINC4 17.11289562659939 0.27893181706115244 1 {I|L}N{I|L} 3 -1 19.966 0 0 1.8224 0 0 131.09349573186358 621.2347946637877 752.3282903956513 0 0 0 0 0 1.1549471895720984 0 0 0 {I|L}N{I|L} 1.8224 - 120 + NaN NaN 143770.3 NaN 15972 3759 19725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19735 80.89 NaN 815420 35 0 40714 0.326 + 26384 SSRTSVRLL 9 100 509.8036971120352 1017.5928412908704 2 509.803955078125 MULTI HCD FTMS 0 0 0 19734 721904.4375 0.8553795775382187 -4 0.119964599609375 1 Unmodified _SSRTSVRLL_ REV__KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 4.3292370932331545 0.3181982124262546 1 A 1 -1 5.2165 0 0 0.51263 0 0 105.07878880077097 838.4633272760374 943.5421160768084 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.51263 - 322 + NaN NaN 212121.1 NaN 15973 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19736 80.895 NaN 344300 35 0 14468 0.261 -1 TPILLMVLF 9 82 531.8170912349951 1061.6196295367902 2 531.8173217773438 MULTI HCD FTMS 0 0 0 19734 294351.96875 0.8820439812924622 3 -0.08199310302734375 2 Oxidation (M) _TPILLM(Oxidation (M))VLF_ tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2712 0 0 896.5398698705777 0 896.5398698705777 0 3.2783248807594845 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2712 + + 196 + NaN NaN 132710.9 NaN 15974 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19737 80.898 NaN 229670 35 0 77585 0.261 + 17308 LYPQFMFHL 9 42 598.3019807680839 1194.5894086029678 2 598.3028564453125 MULTI HCD FTMS 0 0 0 19734 102079.7109375 0.03727820525730817 47 -1.3552932739257812 3 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 23.1484247019978 0.1603590852062899 1 [Y{I|L}][QP]{[CP]|[EA]}N{I|L} 8 4 23.249 0 0 1.9462 0 0 0 263.10280064941895 263.10280064941895 14.564856298445575 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}][QP]{[CP]|[EA]}N{I|L} 1.9462 - 32 + NaN NaN 119915.2 NaN 15975 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19738 80.902 NaN 92127 35 0 19661 0.263 + 28829 TVEPIGALI 9 39 456.7733271465392 911.5321013598784 2 456.77362060546875 MULTI HCD FTMS 0 0 0 19734 51746.82421875 0.3121132684458529 3 -0.08199310302734375 4 Unmodified _TVEPIGALI_ REV__ENST00000581912.1_3_18:72166628-72166823:+|nuORF 16.942295170755138 0.21397866736869717 1 Q{I|L}{I|L} 3 -1 39.693 0 0 4.3545 0 0 539.2983265607437 0 539.2983265607437 0 25.088643834802156 0 0 0 1.3494850021680094 0 0 0 Q{I|L}{I|L} 4.3545 - 17 NaN NaN 102568.4 NaN 15976 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19739 80.905 NaN 283660 35 0 35183 0.261 + 32866 WYDEPVVF 8 62 527.7464861239258 1053.4784193146515 2 527.7465209960938 MULTI HCD FTMS 0 0 0 19734 42836.3046875 0.6766356134347113 3 -0.08199310302734375 5 Unmodified _WYDEPVVF_ REV__ENSG00000183878|ENST00000545955|UTY;REV__nc|ENSG00000183878|O14607-3|UTY;REV__nc|ENSG00000183878|O14607-4|UTY;REV__nc|ENSG00000183878|O14607-5|UTY;REV__nc|ENSG00000183878|O14607|UTY 10.183394434864962 0.5188676124868831 1 TGQD{M(Oxidation (M))|F} 5 -1 33.716 0 0 3.2005 0 0 487.24436277343904 0 487.24436277343904 0 17.518572025801543 0 0 0 0.4247425010840047 0 0 0.2302046884880938 TGQD{M(Oxidation (M))|F} 3.2005 - 189 + NaN NaN 126190 NaN 15977 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19740 80.908 NaN 117960 35 0 7495.8 0.261 + 7634 FYINSGTLQF 10 49 595.2981114266805 1188.581669920161 2 595.2979125976562 MULTI HCD FTMS 0 0 0 19734 42383.71484375 0.07896343923592149 12 -0.361236572265625 6 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 18.373094154950223 0.33925629317698053 1 MM[Q{I|L}]{M(Oxidation (M))|F} 5 7 22.747 0 0 1.9138 0 0 520.2882557599625 0 520.2882557599625 0 10.300084529637983 0 0 0 0.805462187404089 0 0 0 MM[Q{I|L}]{M(Oxidation (M))|F} 1.9138 - 46 NaN NaN 93804 NaN 15978 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19741 80.912 NaN 250690 35 0 11106 0.261 -1 MPSLPEMMF 9 82 549.7365687884333 1097.4585846436664 2 549.7384033203125 MULTI HCD FTMS 0 0 0 19734 31695.1171875 0.3862879593101161 5 -0.14768218994140625 7 Oxidation (M) _MPSLPEM(Oxidation (M))MF_ ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL 21.74664581756881 0.17247014374749275 1 M{M(Oxidation (M))|F} 2 -1 23.188 0 0 2.1128 0 0 801.3374614131254 0 801.3374614131254 0 3.49485002168009 0 0 0 0.6989700043360187 0 0 0 M{M(Oxidation (M))|F} 2.1128 + + 279 NaN NaN 125968.3 NaN 15979 3760 19734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19743 80.917 NaN 1407900 35 0 68590 0.327 + 26375 SSRQKLSPV 9 123 501.2905065387472 1000.5664601442944 2 501.2908020019531 MULTI HCD FTMS 0 0 0 19742 1285601.125 0.9148959298784407 1 -0.03285980224609375 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 10.073929032068715 0.27331982688540024 1 N{I|L}V{I|L}{M(Oxidation (M))|F}K 6 -1 14.619 0 0 1.4611 0 0 0 283.11914621997266 283.11914621997266 4.134797042975935 0 0 0 0 1.079689690656103 0 0 0 N{I|L}V{I|L}{M(Oxidation (M))|F}K 1.4611 - 237 + NaN NaN 298692.7 NaN 15980 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19744 80.921 NaN 427800 35 0 52087 0.261 + 35173 YVITSVSWW 9 99 570.7896929712314 1139.5648330092627 2 570.8074340820312 MULTI HCD FTMS 0 0 0 19742 46590.11328125 0.1725852986363887 7 -0.21338653564453125 2 Unmodified _YVITSVSWW_ EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant 19.438996006549623 0.19240772610395238 1 [YV]AG[RD]{M(Oxidation (M))|F}{I|L}S 9 7 40.71 0 0 3.5724 0 0 0 128.03982726933614 128.03982726933614 17.80271844005476 0 0 0 0 0.5 1.3010299956639813 0 0.5242275032520141 [YV]AG[RD]{M(Oxidation (M))|F}{I|L}S 3.5724 - 2067 NaN NaN 142694.9 NaN 15981 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19745 80.925 NaN 539350 35 0 85597 0.261 + -1 NIIKKCPTF 9 79 560.8103436324925 1119.606134331785 2 560.829833984375 MULTI HCD FTMS 0 0 0 19742 19010.013671875 0.5207394221403336 4 -0.1214752197265625 3 Carbamidomethyl (C) _NIIKKC(Carbamidomethyl (C))PTF_ REV__ENST00000252713.8_3_7:99171546-99171660:+|nuORF 16.942295170755138 0.21397866736869717 1 N{I|L}PT{M(Oxidation (M))|F} 5 -1 37.99 0 0 3.3931 0 0 529.2996290601037 0 529.2996290601037 0 11.091896990114236 0 0 0 0.3252574989159953 0 0.805462187404089 0 N{I|L}PT{M(Oxidation (M))|F} 3.3931 - 994 + NaN NaN 161968.1 NaN 15982 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19746 80.928 NaN 302340 35 0 63115 0.261 + 29756 VEALEFEVF 9 55 541.7743306114409 NaN 0 541.7560424804688 PEAK HCD FTMS 0 0 0 19742 15817.427734375 1 0 0 4 Unmodified _VEALEFEVF_ REV__ENST00000456578.6_1_1:40205841-40207105:+|nuORF 11.640296217721598 0.23883959125015683 1 D{M(Oxidation (M))|F}EEA{I|L} 6 -1 17.14 0 0 1.5848 0 0 131.13386718310852 243.09848962955314 374.2323568126617 0 0 0 0 0 0.3494850021680094 0 0 0 D{M(Oxidation (M))|F}EEA{I|L} 1.5848 - 22 + NaN NaN 129092.6 NaN 15983 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19747 80.931 NaN 336810 35 0 39301 0.261 + 21207 PQPSSHPW 8 63 468.22310253335587 934.4316521335118 2 468.7234191894531 MULTI HCD FTMS 0 0 0 19742 113109.734375 0.22041743440036873 -7 0.201873779296875 5 Unmodified _PQPSSHPW_ REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF 5.230669730166228 0.5342319408533849 1 [RK]K 3 -1 10.458 0 0 1.1191 0 0 0 519.0989473932249 519.0989473932249 6.478174818886375 0 0 0 0 0 0 0 0.3494850021680094 [RK]K 1.1191 - 12 + NaN NaN 135720.7 NaN 15984 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19748 80.935 NaN 398290 35 0 36951 0.261 + 20300 NYPHFFLDF 9 75 600.2796112909327 1198.5446696486654 2 600.2802734375 MULTI HCD FTMS 0 0 0 19742 123851.046875 0.6846983850673714 -3 0.0870361328125 6 Unmodified _NYPHFFLDF_ ENSG00000197872|ENST00000381323|CYRIA 56.17704186161178 0.022929533404884107 1 [YN]QQ{M(Oxidation (M))|F}PQK{M(Oxidation (M))|F} 9 5 + 38.61 0 0 3.2214 3.2214 82.048 0 0 0 -0.13373872417368204 5.304396003752316 -0.13373872417368204 6.443481302951277 0 0.6989700043360187 2 0 0.7059771852360797 [YN]QQ{M(Oxidation (M))|F}PQK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F};[YN]QQ{M(Oxidation (M))|F}P[AG]K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KK{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))D{M(Oxidation (M))|F} 3.2214;2.6838;2.4531;1.4622 -;-;-;- 556 + NaN NaN 158454.3 NaN 15985 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19749 80.938 NaN 152760 35 0 50056 0.261 + -1 YLWCLVVVC 9 30 606.3001416477327 1210.5857303622654 2 606.3004150390625 MULTI HCD FTMS 0 0 0 19742 32335.03125 0.37739928586649757 19 -0.5612411499023438 7 2 Carbamidomethyl (C) _YLWC(Carbamidomethyl (C))LVVVC(Carbamidomethyl (C))_ REV__ENSG00000111728|ENST00000396037|ST8SIA1;REV__nc|ENSG00000111728|Q92185-2|ST8SIA1 9.347437153973935 0.2795965555214564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 123318.6 NaN 15986 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19750 80.941 NaN 384970 35 0 195910 0.264 + 21002 PLNVDLVL 8 43 441.76822041505295 881.5218878969059 2 441.7684020996094 MULTI HCD FTMS 0 0 0 19742 137174.9375 0.03513769120736991 -7 0.201873779296875 8 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 32.30548876998284 0.3297748069446609 1 D{I|L}V{I|L} 4 -1 49.993 0 0 5.6712 0 0 423.247362205275 0 423.247362205275 0 49.992822134202015 0 0 0 1.3807196863200843 0 0.4247425010840047 0 D{I|L}V{I|L} 5.6712 + + 17 NaN NaN 161203.5 NaN 15987 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19751 80.945 NaN 96075 35 0 9235.7 0.261 + 33963 YLTFVHEEI 9 43 575.7931595181152 NaN 0 575.7926025390625 PEAK HCD FTMS 0 0 0 19742 30899.5703125 0.833931172943921 -10 0.28047943115234375 9 Unmodified _YLTFVHEEI_ REV__ENSG00000176896|ENST00000696128|TCEANC;REV__nc|ENSG00000176896|Q8N8B7-2|TCEANC 7.910154910731844 0.25691533546754686 1 E 1 -1 6.9897 0 0 0.60803 0 0 131.09958121287326 886.410187723697 1017.5097689365703 0 0 0 0 0 0 0 0 0 E 0.60803 + + 5 + NaN NaN 110638.4 NaN 15988 3761 19742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19753 80.949 NaN 1796300 35 0 191510 0.327 + 15361 LPDEEIFQQL 10 101 616.313992041861 1230.6134311505218 2 616.31396484375 MULTI HCD FTMS 0 0 0 19752 728613.5 0.6414936152824262 4 -0.12810516357421875 1 Unmodified _LPDEEIFQQL_ ENSG00000169019|ENST00000381571|COMMD8 110.5527297667825 5.049829312965123E-05 1 {[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}QQ{I|L} 10 2 + 78.038 0 0 6.3414 6.3414 86.537 0 0 0 1.7905216604071228 35.21739329279981 1.7905216604071228 6.465912507003608 0 2.524227503252014 0 1.7104093769761877 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}QQ{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTM{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{M(Oxidation (M))|F}{I|L}[YG]TM{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[YC]|[HE]}VVTM{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[YC]|[HE]}V{I|L}SM{I|L} 6.3414;5.816;5.5967;5.5967;5.0712;5.0712;3.9718;3.7676;3.4076;3.2645 -;-;-;-;-;-;-;-;-;- 9296 NaN NaN 364555 NaN 15989 3762 19752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19754 80.954 NaN 610460 35 0 95284 0.262 + 14519 LFDITGQDF 9 67 528.2559619881806 1054.4973710431611 2 528.2564086914062 MULTI HCD FTMS 0 0 0 19752 217778.03125 0.8720053855167887 -2 0.0590667724609375 2 Unmodified _LFDITGQDF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 83.42873516780209 0.004742894019233849 1 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F} 9 2 + 80.143 0 0 7.6001 7.6001 87.316 0 0 0 2.6709779556855295 69.68555973876605 2.6709779556855295 3.0102999566398125 0 2.774227503252014 0 0.3807196863200844 0 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}TGQD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TG[AG]D{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}TG[AG]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}T{[WN]|[YH]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}EGQD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}EGQD{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}EG[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}EG[AG]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[QG]|[NA]}T{I|L}{I|L}D{M(Oxidation (M))|F} 7.6001;7.3147;6.7269;6.4414;4.973;4.4212;4.3293;3.548;3.4561;1.6663 -;+;-;-;-;-;-;-;-;- + 273 NaN NaN 180374.5 NaN 15990 3762 19752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19755 80.957 NaN 223760 35 0 98814 0.261 -1 0 46 477.26532121864915 476.25804475204916 1 478.2686462402344 MULTI HCD FTMS 0 0 0 19752 74071.140625 0.93968864055899 -2 0.0590667724609375 3 NaN NaN 1 {I|L}{[TV]|[{I|L}S]} 3 -1 12.007 0 0 2.5211 0 0 145.04803606239915 0 145.04803606239915 0 12.007046801327734 0 0 0 0 0 0.3054621874040891 0 {I|L}{[TV]|[{I|L}S]} 2.5211 - 8 + NaN NaN 112240.6 NaN 15991 3762 19752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19756 80.961 NaN 149700 35 0 29070 0.261 + 3168 EAVLIDPVL 9 45 484.7866390159186 967.5587250986372 2 484.7868957519531 MULTI HCD FTMS 0 0 0 19752 68411.484375 1 0 0 4 Unmodified _EAVLIDPVL_ ENSG00000105755|ENST00000292147|ETHE1;ENST00000595115.1_1_19:44030583-44031338:-|nuORF 15.847184025352803 0.2234401846867398 1 D[VP]{I|L} 4 5 26.198 0 0 2.7076 0 0 525.3159285564435 0 525.3159285564435 0 19.20818753952375 0 0 0 1 0 0 0 + D[VP]{I|L} 2.7076 + + 11 NaN NaN 115697.9 NaN 15992 3762 19752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19757 80.964 NaN 111780 35 0 20307 0.261 -1 0 42 481.7707537869351 961.5269546406702 2 482.2608337402344 MULTI HCD FTMS 0 0 0 19752 5155.76123046875 0.07687670178634126 7 -0.2135009765625 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 19.732 0 0 2.0521 0 0 796.4477290320749 0 796.4477290320749 0 10.523787536356581 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 2.0521 - 41 + NaN NaN 97063.7 NaN 15993 3762 19752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19758 80.967 NaN 74591 35 0 4492.3 0.261 -1 IYMDTLNIFM 10 43 646.7979125976562 NaN 0 646.7979125976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _IYM(Oxidation (M))DTLNIFM(Oxidation (M))_ ENSG00000165678|ENST00000372134|GHITM 15.248480904072842 0.31912431859025153 1 {M(Oxidation (M))|F}{I|L}N 3 -1 30.445 0 0 2.3572 0 0 165.04506650214995 749.3204214732671 914.365487975417 0 0 0 0 0 1 0 0 0.4247425010840047 {M(Oxidation (M))|F}{I|L}N 2.3572 - 7 + NaN NaN 95973.8 NaN 15994 3762 19752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19760 80.972 NaN 956450 35 0 194540 0.327 + 28618 TQRGALFLLF 10 80 583.3398171601634 1164.6650813871267 2 583.3402709960938 MULTI HCD FTMS 0 0 0 19759 524984.375 0.8019695047748203 1 -0.03948974609375 1 Unmodified _TQRGALFLLF_ ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF 65.47368725323818 0.022948616544343086 1 [QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 80.759 0 0 6.9341 6.9341 86.784 0 0 0 12.632192780232785 39.19998850511354 12.632192780232785 4.304009240123889 0 2.844187677400525 0 0.8494850021680094 0 [QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]R{I|L}Q{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]R[AG]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]RQ{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[QT]R{I|L}[AG]{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}QRTQ{I|L}{M(Oxidation (M))|F};[QT]R{I|L}Q{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[QT]R{I|L}Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[QT]R[AG]{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.9341;6.5646;6.1435;5.9879;5.7951;5.7739;5.6518;5.6183;5.4255;5.1972 -;-;+;-;-;-;-;-;-;- + 1349 NaN NaN 229637.1 NaN 15995 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19761 80.977 NaN 1052000 35 0 264800 0.261 + 21550 PYLLISTQI 9 86 524.3075485468023 1046.6005441604045 2 524.3079833984375 MULTI HCD FTMS 0 0 0 19759 568627.6875 0.6025121020056512 6 -0.19057464599609375 2 Unmodified _PYLLISTQI_ ENSG00000137880|ENST00000260447|GCHFR;nc|ENSG00000137880|P30047-2|GCHFR 49.55428908609986 0.03219431099695407 1 TS{I|L}{I|L}NQ{I|L} 7 5 60.668 0 0 5.7966 0 0 259.15281874824376 0 259.15281874824376 0 41.58255266985152 0 0 0 1.774227503252014 0 0.75 0 TS{I|L}{I|L}NQ{I|L} 5.7966 - 465 NaN NaN 242816.3 NaN 15996 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19762 80.98 NaN 768730 35 0 53820 0.261 + 17093 LYLEFLQKF 9 88 600.8367501363738 1199.6589473395475 2 600.8370361328125 MULTI HCD FTMS 0 0 0 19759 304690.375 0.5202744504539578 -1 0.02292633056640625 3 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 114.20165948288297 0.0022564706844261533 1 {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F} 9 0 + 104.84 0 0 8.7388 8.7388 88.203 0 0 0 1.0391719390811716 1.0391719390811716 1.0391719390811716 1.0391719390811716 0 3.1237125054200234 1.6989700043360187 0 1.579689690656103 + + {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};{I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}E{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}EQ{I|L}K{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F} 8.7388;8.6522;7.9712;7.9111;7.7335;7.6135;7.4646;6.9924;6.7235;6.6948 +;+;-;-;-;-;-;-;-;- + 1715 + NaN NaN 202788.2 NaN 15997 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19763 80.984 NaN 697560 35 0 98122 0.261 -1 0 85 566.2978883914894 1130.5812238497788 2 566.2982788085938 MULTI HCD FTMS 0 0 0 19759 284413.71875 0.5972347203369782 24 -0.7056350708007812 4 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 59.059 0 0 5.2238 0 0 291.15825087715 0 291.15825087715 0 25.810384486277798 0 0 0 2.6861818737241734 0 0.6747425010840047 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2238 - 707 NaN NaN 187154.3 NaN 15998 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19764 80.987 NaN 573440 35 0 51549 0.261 + 384 AIPFSFIVF 9 80 520.794505837696 1039.5744587421918 2 520.7947387695312 MULTI HCD FTMS 0 0 0 19759 20205.513671875 0.15012163580965665 10 -0.30881500244140625 5 Unmodified _AIPFSFIVF_ REV__ENSG00000109501|ENST00000226760|WFS1;REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6343 0 0 874.4953704626981 0 874.4953704626981 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6343 + + 202 + NaN NaN 163828.1 NaN 15999 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19765 80.99 NaN 220280 35 0 30145 0.261 + 15969 LPQFGMVI 8 49 452.751490858636 NaN 0 452.76019287109375 PEAK HCD FTMS 0 0 0 19759 4850.69189453125 0.4974403960848981 -1 0.02292633056640625 6 Unmodified _LPQFGMVI_ ENSG00000156219|ENST00000355810|ART3;ENST00000510863.1_1_4:77028861-77033669:+|nuORF;nc|ENSG00000156219|Q13508-2|ART3;nc|ENSG00000156219|Q13508-3|ART3 18.13498045792455 0.38579626240450227 1 PH 2 7 9.464 0 0 1.0475 0 0 113.06942819640751 553.2873018854124 666.3567300818199 0 0 0 0 0 0 0 0 0 PH 1.0475 - 10 + NaN NaN 114265.5 NaN 16000 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19766 80.994 NaN 115270 35 0 12136 0.261 + 35593 YYIFIPSKF 9 45 589.3180975350526 1176.6216421369052 2 589.31787109375 MULTI HCD FTMS 0 0 0 19759 31121.484375 0.46547293957632974 -2 0.0557861328125 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1639198954644489 1 YY{I|L} 3 6 37.447 0 0 3.1826 0 0 0 734.3876213573983 734.3876213573983 36.73393743112328 0 0 0 0 0.8494850021680094 2 0 0 + YY{I|L} 3.1826 + + 13 + NaN NaN 97988.9 NaN 16001 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19767 80.997 NaN 87366 35 0 18160 0.264 -1 0 35 437.7721020561417 873.5296511790834 2 437.7721252441406 MULTI HCD FTMS 0 0 0 19759 37380.1796875 0.4686528040144972 -1 0.02292633056640625 8 NaN NaN 1 {I|L}P 2 -1 42.959 0 0 4.9178 0 0 0 660.3696154758117 660.3696154758117 19.006375246153908 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}P 4.9178 - 10 + NaN NaN 99339.6 NaN 16002 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19768 81 NaN 57289 35 0 12813 0.261 + 14435 LEQFPTVL 8 26 473.7659066301301 NaN 0 473.7658386230469 PEAK HCD FTMS 0 0 0 19759 21097.033203125 0.5058363967575313 1 -0.03948974609375 9 Unmodified _LEQFPTVL_ ENST00000348993.9_1_15:85175130-85180634:+|nuORF;ENST00000427525.2_1_15:85175388-85177573:+|nuORF;ENST00000530891.3_1_15:85175130-85175559:+|nuORF;nc|ENSG00000176700|Q9GZW5-2|SCAND2P;nc|ENSG00000176700|Q9GZW5|SCAND2P 4.3292370932331545 0.38822285293237185 1 E 1 7 6.9897 0 0 0.73925 0 0 131.09579764406163 682.3516939752561 813.4474916193178 0 0 0 0 0 0 0 0 0 + E 0.73925 + + 1 + NaN NaN 106854.5 NaN 16003 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19769 81.004 NaN 173920 35 0 26272 0.261 + 25640 SGVYGKFQVE 10 45 557.2817344191137 1112.5489159050273 2 557.2679443359375 MULTI HCD FTMS 0 0 0 19759 12807.701171875 0.1401525439566363 6 -0.19057464599609375 10 Unmodified _SGVYGKFQVE_ tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1 9.38312468134398 0.42334543440173333 1 {I|L}{M(Oxidation (M))|F}DK{I|L} 5 9 35.573 0 0 3.1974 0 0 478.18867690254064 0 478.18867690254064 0 24.604093769761874 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}DK{I|L} 3.1974 - 80 NaN NaN 121271.3 NaN 16004 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19770 81.007 NaN 176360 35 0 28401 0.261 + 16007 LPRERSLS 8 60 479.27757849525995 956.5406040573199 2 479.2789306640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _LPRERSLS_ ENST00000379287.3_1_6:13487318-13487489:-|nuORF 5.760428011301431 0.5334459684533844 1 S{I|L} 2 6 13.711 0 0 1.4334 0 0 132.08755227228045 621.3081759088499 753.3957281811304 0 0 0 0 0 0.4247425010840047 0 0 0 + S{I|L} 1.4334 + + 16 + NaN NaN 110250.5 NaN 16005 3763 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19772 81.012 NaN 1608500 35 0 176320 0.327 + 15148 LMSLIINTF 9 95 534.2939126633656 1066.5732723935312 2 534.294189453125 MULTI HCD FTMS 0 0 0 19771 1005105.375 0.5611772627554292 7 -0.2102203369140625 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 174.72732175369546 1.2540765405420886E-09 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 88.787 0 0 8.3245 8.3245 94.443 0 0 0 0.9235529448454827 34.38659155764905 0.9235529448454827 15.902639302688954 0 2.3494850021680094 0 1.829689690656103 0.6694451763165201 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[QT]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}KA{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}A{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F} 8.3245;6.8335;4.5827;4.3434;3.7999;3.239;3.0603;2.821;2.4995;2.2602 +;-;-;-;-;-;-;-;-;- + 3251 NaN NaN 333862.5 NaN 16006 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19773 81.016 NaN 545520 35 0 66470 0.261 + 13448 KYPENFFLL 9 62 585.8132425088911 1169.6119320845821 2 585.8134765625 MULTI HCD FTMS 0 0 0 19771 486746.5 0.002455106658569506 197 -4.85223388671875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 76.82478488871298 0.006879825292024087 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 76.691 0 0 6.557 6.557 88.94 0 0 0 7.3708934260475445 45.61120610332473 7.3708934260475445 9.208187539523749 0 2.579689690656103 0 0 1.6791746928241125 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L} 6.557;5.7697;5.0962;4.3089;4.1355;3.6883;3.461;3.3482;2.901;2.6436 +;-;-;-;-;-;-;-;-;- + 724 NaN NaN 168840.8 NaN 16007 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19774 81.02 NaN 248510 35 0 15419 0.262 + 1768 CLLSTLQFV 9 75 512.2814807207097 1022.5484085082195 2 512.2815551757812 MULTI HCD FTMS 0 0 0 19771 114811.5625 0.9177917659866692 3 -0.08853912353515625 3 Unmodified _CLLSTLQFV_ ENST00000468090.5_1_21:45180432-45180885:+|nuORF 7.289230182591677 0.29575926068275815 1 TAT{I|L}PE 6 7 20.934 0 0 2.0473 0 0 392.20271498847814 0 392.20271498847814 0 10.924778212679485 0 0 0 0 0 0 0 TAT{I|L}PE 2.0473 - 193 NaN NaN 136043.3 NaN 16008 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19775 81.023 NaN 133650 35 0 10651 0.261 -1 0 52 644.7753951727167 3218.840593530583 5 644.7749633789062 MULTI HCD FTMS 0 0 0 19771 47864.7421875 0.9689622085432766 12 -0.35114288330078125 4 NaN NaN 1 {I|L}[WH] 3 -1 10.458 0 0 0.32489 0 0 2764.566387035934 0 2764.566387035934 0 2.385606273598313 0 0 0 0 0 0 0 {I|L}[WH] 0.32489 - 14 NaN NaN 101400.1 NaN 16009 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19776 81.026 NaN 64981 35 0 6692.9 0.264 + 25151 SAIIFETPL 9 31 495.77824443286687 989.5419359325338 2 495.7787780761719 MULTI HCD FTMS 0 0 0 19771 7914.400390625 0.09701418319364717 7 -0.2102203369140625 5 Unmodified _SAIIFETPL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.40215 0 0 146.142779293665 693.3089693658811 839.4517486595462 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.40215 + + 6 + NaN NaN 87847 NaN 16010 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19777 81.03 NaN 101590 35 0 6258.1 0.261 + 25799 SLMVMLTAPFY 11 57 636.8217971533026 1271.629041373405 2 636.320556640625 MULTI HCD FTMS 0 0 0 19771 36357.8515625 0.7247243919141725 -13 0.37575531005859375 6 Unmodified _SLMVMLTAPFY_ REV__ENSG00000111886|ENST00000402938|GABRR2;REV__ENSG00000146276|ENST00000454853|GABRR1;REV__nc|ENSG00000111886|P28476-2|GABRR2;REV__nc|ENSG00000146276|P24046-2|GABRR1;REV__nc|ENSG00000146276|P24046-3|GABRR1 2.9952420565917617 0.40578455234410343 1 WR{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E] 5 -1 10.757 0 0 0.84594 0 0 488.26925149442144 0 488.26925149442144 0 5.2726570743408985 0 0 0 0 0 0 0 WR{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E] 0.84594 - 22 NaN NaN 100080.7 NaN 16011 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19778 81.033 NaN 126120 35 0 10548 0.261 + 35594 YYIFIPSKF 9 43 589.3180975350526 1176.6216421369052 2 589.3193969726562 MULTI HCD FTMS 0 0 0 19771 56177.48046875 0.8402265347210294 -1 0.03948974609375 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19398022840297344 1 YY{I|L} 3 6 36.695 0 0 3.1186 0 0 0 734.388360331193 734.388360331193 36.69469995980698 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + YY{I|L} 3.1186 + + 12 + NaN NaN 106841.2 NaN 16012 3764 19771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19780 81.038 NaN 683070 35 0 32687 0.327 + 26309 SRSLRSTVL 9 95 509.8036971120352 1017.5928412908704 2 509.8040466308594 MULTI HCD FTMS 0 0 0 19779 695811.5 0.8244622362724211 1 -0.03948974609375 1 Unmodified _SRSLRSTVL_ nc|ENSG00000078699|O43439-3|CBFA2T2 4.3292370932331545 0.3181982124262546 1 QV 2 8 5.5732 0 0 0.54768 0 0 519.3256420109307 268.1239107721313 787.449552783062 0 0 0 0 0 0 0 0 0 QV 0.54768 - 339 + NaN NaN 194406.8 NaN 16013 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19781 81.042 NaN 733350 35 0 139030 0.261 + 17611 LYYDAIWHF 9 89 614.2951260546212 1226.5756991760422 2 614.2957153320312 MULTI HCD FTMS 0 0 0 19779 385704.9375 0.016846827023519563 30 -0.8800277709960938 2 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 104.79918948944588 0.003791450360204016 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 92.45 0 0 7.5372 7.5372 86.801 0 0 0 2.0217596488785006 2.0217596488785006 2.0217596488785006 2.0217596488785006 0 2.4247425010840047 2 0.5629529932484498 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]DYA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}KH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]DAY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]YD[WH]A{I|L}{M(Oxidation (M))|F};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}HK{M(Oxidation (M))|F};[Y{I|L}]DY{[QN]|[E{I|L}]|[KN]}KH{M(Oxidation (M))|F} 7.5372;7.3724;6.4952;5.8463;5.6228;5.2941;5.2647;5.0192;4.9402;4.8043 +;+;-;-;-;-;-;-;-;- + 2964 NaN NaN 194627.7 NaN 16014 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19782 81.046 NaN 625620 35 0 192190 0.262 -1 IPVTIMDVF 9 69 525.7804373332169 1049.5463217332338 2 525.7808227539062 MULTI HCD FTMS 0 0 0 19779 317644.625 0.6784754868815485 1 -0.03948974609375 3 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 32.30548876998284 0.10066689432505688 1 TYPDV{M(Oxidation (M))|F} 6 -1 49.276 0 0 4.695 0 0 309.2047596662125 0 309.2047596662125 0 34.09887825920684 0 0 0 1.586696871556164 0 0.3054621874040891 0 TYPDV{M(Oxidation (M))|F} 4.695 - 174 NaN NaN 184107.2 NaN 16015 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19783 81.049 NaN 512580 35 0 80008 0.261 + 11049 IYFPYVLKI 9 68 578.3441619009734 1154.6737708687467 2 578.3446044921875 MULTI HCD FTMS 0 0 0 19779 237425.5 0.4715728027153241 3 -0.09191131591796875 4 Unmodified _IYFPYVLKI_ ENSG00000188921|ENST00000495827|HACD4 64.23631603340823 0.01165516075559909 1 {I|L}Y{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}K{I|L} 9 0 + 64.886 0 0 5.6194 5.6194 88.618 0 0 0 20.481647233508724 11.179767852945943 11.179767852945943 11.179767852945943 0 2.274227503252014 1.6989700043360187 0.5 0.3252574989159953 + + {I|L}Y{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}K{I|L};{I|L}Y{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VK{I|L}{I|L} 5.6194;4.6512 +;- + 221 + NaN NaN 161447.2 NaN 16016 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19784 81.053 NaN 327550 35 0 15511 0.261 -1 0 99 531.8170912349951 1061.6196295367902 2 531.8174438476562 MULTI HCD FTMS 0 0 0 19779 177812.71875 0.5328268706226781 8 -0.24312591552734375 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 17.857 0 0 1.682 0 0 896.540678586398 0 896.540678586398 0 2.1774842663096887 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F} 1.682 - 213 + NaN NaN 133675.1 NaN 16017 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19785 81.056 NaN 629930 35 0 83086 0.261 + 14520 LFDITGQDF 9 59 528.2559619881806 1054.4973710431611 2 528.7576293945312 MULTI HCD FTMS 0 0 0 19779 175456.34375 1 0 0 6 Unmodified _LFDITGQDF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 93.16586880292088 0.00444300900000894 1 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F} 9 2 + 87.634 0 0 8.3105 8.3105 93.524 0 0 0 4.137342758552691 67.14484880297397 4.137342758552691 12.09544243948811 0 2.805462187404089 0 1.110924374808178 0.28872548999643577 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TG[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}EGQD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}T{[WN]|[YH]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}EG[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CA]|SS}G[DP]{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CA]|SS}G[DP]V{I|L}{M(Oxidation (M))|F} 8.3105;7.1635;5.5356;5.0486;4.3885;3.5224;2.6672 -;-;-;-;-;-;- 399 NaN NaN 179628.6 NaN 16018 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19786 81.059 NaN 320660 35 0 76038 0.262 + 15292 LPAGIVAVL 9 54 426.7810486417226 851.5475443502452 2 426.7812805175781 MULTI HCD FTMS 0 0 0 19779 119554.640625 1 0 0 7 Unmodified _LPAGIVAVL_ ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD;nc|ENSG00000122882|O95905-3|ECD 36.466142684027034 0.08156716203802528 1 TVAV{I|L} 5 5 47.18 0 0 5.5406 0 0 350.22368056465 0 350.22368056465 0 35.49803764475705 0 0 0 1.6747425010840047 0 0 0 TVAV{I|L} 5.5406 - 48 NaN NaN 132930.9 NaN 16019 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19787 81.063 NaN 315590 35 0 44744 0.261 + 34073 YNLDSYNIEI 10 77 622.2946350420171 NaN 0 622.3158569335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YNLDSYNIEI_ REV__ENSG00000256394|ENST00000537611|ASIC5 25.399314129420986 0.2368981700431367 1 AV{I|L} 3 -1 10.802 0 0 0.86932 0 0 734.2736134904811 222.0888613336547 956.3624748241358 0 0 0 0 0 0 0 0 0 AV{I|L} 0.86932 - 85 + NaN NaN 145567.8 NaN 16020 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19788 81.066 NaN 254420 35 0 30606 0.261 + 11566 IYSTAFDYF 9 63 563.758422190533 1125.502291447866 2 563.758544921875 MULTI HCD FTMS 0 0 0 19779 67668.375 0.024981808656974955 23 -0.6662216186523438 9 Unmodified _IYSTAFDYF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1 57.47134341890925 0.0211188941628804 1 {M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 4 5 46.714 0 0 4.1505 0 0 535.2643669090486 0 535.2643669090486 0 30.393272319821346 0 0 0 1.8494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 4.1505 + + 138 + NaN NaN 116023.6 NaN 16021 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19789 81.069 NaN 198310 35 0 21130 0.261 -1 SYADQMFLL 9 63 552.2574313980452 NaN 0 552.2566528320312 PEAK HCD FTMS 0 0 0 19779 20639.25 0.22705835840137517 5 -0.1478118896484375 10 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 10.823927491677226 0.2427956001690155 1 AW{M(Oxidation (M))|F} 3 -1 9.6927 0 0 0.87916 0 0 260.08748134902163 435.24411951236567 695.3316008613873 0 0 0 0 0 0 0 0 0 AW{M(Oxidation (M))|F} 0.87916 - 85 + NaN NaN 110589.8 NaN 16022 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19790 81.073 NaN 105590 35 0 8872.5 0.261 -1 GYLCKYQFE 9 55 604.2738619120184 1206.5331708908368 2 604.272705078125 MULTI HCD FTMS 0 0 0 19779 15813.8759765625 0.22407762828268962 -6 0.17896270751953125 11 Carbamidomethyl (C) _GYLC(Carbamidomethyl (C))KYQFE_ ENSG00000176435|ENST00000342213|CLEC14A 10.823927491677226 0.26684000660059787 1 [YG]{I|L}T{M(Oxidation (M))|F}N[YQ]{[DS]|[MA]|[CV]|TT} 10 -1 + 49.398 0 0 4.0942 4.0942 60.202 0 0 0 0 0 0 0 0 1.4247425010840047 0 0 0.8494850021680094 [YG]{I|L}T{M(Oxidation (M))|F}N[YQ]{[DS]|[MA]|[CV]|TT};[YG]{I|L}T{M(Oxidation (M))|F}N[KC]{[{M(Oxidation (M))|F}D]|MM};[YG]{I|L}T{M(Oxidation (M))|F}Y{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT};[YG]{I|L}T{M(Oxidation (M))|F}Y[QA][MN];[YV]AT{M(Oxidation (M))|F}Y{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT};[YG]{I|L}T{M(Oxidation (M))|F}GG[KC]{[{M(Oxidation (M))|F}D]|MM};[YG][YQ]GG{M(Oxidation (M))|F}T{I|L}{[DS]|[MA]|[CV]|TT};[YV]AT{M(Oxidation (M))|F}Y[QA][MN];[YV][YR]Y{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT} 4.0942;4.0942;4.0106;3.6775;3.6152;3.3346;3.3346;2.8677;0.94036 -;-;-;-;-;-;-;-;- 121 + NaN NaN 98633.3 NaN 16023 3765 19779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19792 81.078 NaN 1776300 35 0 203070 0.327 + 26376 SSRQKLSPV 9 108 501.2905065387472 1000.5664601442944 2 501.2907409667969 MULTI HCD FTMS 0 0 0 19791 1069764.75 0.7612963279745323 6 -0.17406463623046875 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 8.745405648335112 0.2847203663274469 1 {NN|[MP]|[D{I|L}]|[EV]}[WR]AD{I|L} 7 -1 20.459 0 0 2.0447 0 0 0 128.1125006513785 128.1125006513785 9.617789869214718 0 0 0 0 0 0.638272163982407 0.5387254899964358 0.3494850021680094 {NN|[MP]|[D{I|L}]|[EV]}[WR]AD{I|L} 2.0447 - 340 NaN NaN 364836.8 NaN 16024 3766 19791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19793 81.082 NaN 346040 35 0 93588 0.261 + -1 KTPCFPIG 8 66 460.23939879386387 918.4642446545278 2 460.23907470703125 MULTI HCD FTMS 0 0 0 19791 302196.03125 0.8315529401789792 2 -0.05242156982421875 2 Carbamidomethyl (C) _KTPC(Carbamidomethyl (C))FPIG_ REV__tr|U7SED7|U7SED7_FUSNUCoproporphyrinogendehydrogenaseHemZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02333PE=4SV=1 5.230669730166228 0.5342319408533849 1 [KT]{I|L} 3 -1 10.458 0 0 1.1386 0 0 0 573.1984957330686 573.1984957330686 5.853481135844875 0 0 0 0 0 0 0 0 [KT]{I|L} 1.1386 - 31 + NaN NaN 146888.9 NaN 16025 3766 19791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19794 81.086 NaN 453920 35 0 124080 0.261 + 34325 YPEDFAIDL 9 53 541.7556731775937 1081.4967934219874 2 541.7560424804688 MULTI HCD FTMS 0 0 0 19791 391269.21875 0.9472618931702973 -2 0.0656890869140625 3 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}A{I|L}D{I|L} 5 4 47.752 0 0 4.4153 0 0 504.18660170722814 0 504.18660170722814 0 14.30971177700259 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}A{I|L}D{I|L} 4.4153 + + 48 NaN NaN 148825.9 NaN 16026 3766 19791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19795 81.089 NaN 492040 35 0 88728 0.261 + 23143 RFILNLPTF 9 88 560.8295653499299 1119.6445777666597 2 560.8297119140625 MULTI HCD FTMS 0 0 0 19791 91358.59375 0.01320101964852322 28 -0.8143157958984375 4 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 57.72198328787511 0.020768266150574023 1 {I|L}N{I|L}TP{M(Oxidation (M))|F} 6 5 55.684 0 0 4.9734 0 0 416.25311155747846 0 416.25311155747846 0 44.693344781604104 0 0 0 2.3807196863200843 0 0.6549471895720985 0 {I|L}N{I|L}TP{M(Oxidation (M))|F} 4.9734 - 971 + NaN NaN 163813.9 NaN 16027 3766 19791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19796 81.092 NaN 294620 35 0 16934 0.261 + 35174 YVITSVSWW 9 74 570.7896929712314 1139.5648330092627 2 570.80712890625 MULTI HCD FTMS 0 0 0 19791 18492.025390625 0.0685006216912781 12 -0.3445587158203125 5 Unmodified _YVITSVSWW_ EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant 13.50788311687929 0.24365122550260465 1 [YN]{I|L}[C(Carbamidomethyl (C))Q]KE 7 7 31.827 0 0 2.7929 0 0 0 201.0975838239689 201.0975838239689 8.919913025904975 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [YN]{I|L}[C(Carbamidomethyl (C))Q]KE 2.7929 - 1190 NaN NaN 131500.8 NaN 16028 3766 19791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19797 81.095 NaN 358990 35 0 24838 0.261 -1 MPYGTVNLL 9 93 512.2617498235335 1022.508946713867 2 512.2623901367188 MULTI HCD FTMS 0 0 0 19791 91506.578125 0.9001236582016912 -1 0.03948974609375 6 Oxidation (M) _M(Oxidation (M))PYGTVNLL_ ENSG00000088298|ENST00000374492|EDEM2;nc|ENSG00000088298|Q9BV94-2|EDEM2 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}P{I|L}G[NS]Y{I|L}{I|L} 9 -1 + 36.142 0 0 3.5346 3.5346 81.386 0 0 0 11.365546851022266 3.2450400074071766 3.2450400074071766 4.259687322722819 0 1.8851518780601921 0 0 0 {M(Oxidation (M))|F}P{I|L}G[NS]Y{I|L}{I|L};{M(Oxidation (M))|F}P{I|L}GG[SG]Y{I|L}{I|L};{M(Oxidation (M))|F}P{I|L}N[SG]Y{I|L}{I|L};{M(Oxidation (M))|F}P{I|L}G[YN]S{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YK]GG{I|L}PE;{M(Oxidation (M))|F}P{I|L}GG[YG]S{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YK]N{I|L}PE;[Y{I|L}]{[QG]|[NA]}{M(Oxidation (M))|F}G{I|L}PE;{M(Oxidation (M))|F}P{I|L}N[YG]S{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}GRA{[{M(Oxidation (M))|F}C]|[YS]}{I|L} 3.5346;3.118;2.604;2.6014;2.398;2.1848;1.8893;1.747;1.6708;1.4464 -;-;-;-;-;-;-;-;-;- 658 + NaN NaN 140677.7 NaN 16029 3766 19791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19799 81.1 NaN 2731800 35 0 1400700 0.327 + 21003 PLNVDLVL 8 51 441.76822041505295 881.5218878969059 2 441.7686462402344 MULTI HCD FTMS 0 0 0 19798 3198555.75 0.8193177726292565 -1 0.02285003662109375 1 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 39.957323273324995 0.23147789240432073 1 AD{I|L}V{I|L} 5 -1 57.875 0 0 6.5654 0 0 352.21077162910314 0 352.21077162910314 0 44.38039076304328 0 0 0 1.8494850021680094 0 0.3807196863200844 0 AD{I|L}V{I|L} 6.5654 - 77 NaN NaN 430016.1 NaN 16030 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19800 81.105 NaN 1110600 35 0 218810 0.261 -1 EDMAELVI 8 76 468.22310253335587 934.4316521335118 2 468.7240905761719 MULTI HCD FTMS 0 0 0 19798 494155.875 0.962963716281553 -1 0.02285003662109375 2 Oxidation (M) _EDM(Oxidation (M))AELVI_ CDH13-HSBP1|1|fusion;CDH13-HSBP1|2|fusion;CDH13-HSBP1|3|fusion;CDH13-HSBP1|4|fusion;ENSG00000140945|ENST00000567109|CDH13;ENST00000566333.1_1_16:82660697-83065865:+|nuORF;nc|ENSG00000140945|P55290-2|CDH13;nc|ENSG00000140945|P55290-3|CDH13;nc|ENSG00000140945|P55290-4|CDH13;nc|ENSG00000140945|P55290-5|CDH13 7.910154910731844 0.5302565402355366 1 {I|L}V{I|L} 3 -1 9.9215 0 0 1.0618 0 0 591.1789846730711 0 591.1789846730711 0 -0.14014361800121833 -0.14014361800121833 0 0 0 0 0 0 {I|L}V{I|L} 1.0618 + + 35 NaN NaN 250805.5 NaN 16031 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19801 81.108 NaN 387380 35 0 15657 0.261 + 11818 KELQKGPFV 9 81 523.3037906164145 NaN 0 523.3037719726562 PEAK HCD FTMS 0 0 0 19798 303459.03125 0.5248292561335269 10 -0.28882598876953125 3 Unmodified _KELQKGPFV_ REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF 10.073929032068715 0.24642998803896465 1 Q 1 -1 10.485 0 0 1.0037 0 0 502.2992897638333 411.2241017238645 913.5233914876978 0 0 0 0 0 0.5 0 0 0 Q 1.0037 + + 19 + NaN NaN 145916.9 NaN 16032 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19802 81.112 NaN 814520 35 0 81519 0.261 -1 SYVGLVYMF 9 73 547.7652323805314 1093.5159118278627 2 547.7759399414062 MULTI HCD FTMS 0 0 0 19798 33717.3359375 0.4279447547350315 -2 0.06233978271484375 4 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 36.04419817259434 0.08350412372117409 1 {M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 7 -1 58.962 0 0 5.392 0 0 165.05898635616558 0 165.05898635616558 0 22.21836246562092 0 0 0 0.805462187404089 0 1.6445990182825423 0.3807196863200844 {M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 5.392 - 1601 + NaN NaN 200561.1 NaN 16033 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19803 81.115 NaN 407450 35 0 112600 0.261 -1 0 50 477.26532121864915 476.25804475204916 1 478.2767639160156 MULTI HCD FTMS 0 0 0 19798 39380.765625 0.49959616933235873 3 -0.08547210693359375 5 NaN NaN 1 {I|L}{[TV]|[{I|L}S]} 3 -1 14.705 0 0 3.0876 0 0 145.0475693267889 0 145.0475693267889 0 14.704999916446797 0 0 0 0 0 0.4247425010840047 0 {I|L}{[TV]|[{I|L}S]} 3.0876 - 6 + NaN NaN 140984.4 NaN 16034 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19804 81.118 NaN 57091 35 0 8859 0.261 + 31102 VTIEVPTPL 9 23 484.7866390159186 967.5587250986372 2 484.7868957519531 MULTI HCD FTMS 0 0 0 19798 7590.6044921875 0.1109551204967185 5 -0.151214599609375 6 Unmodified _VTIEVPTPL_ REV__ENSG00000121057|ENST00000337714|AKAP1 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83097.3 NaN 16035 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19805 81.122 NaN 59017 35 0 7557 0.261 + -1 DMIYLTNLF 9 32 573.2812791455241 NaN 0 573.2819213867188 PEAK HCD FTMS 0 0 0 19798 18847.619140625 0.38277793401847415 24 -0.6995849609375 7 Oxidation (M) _DM(Oxidation (M))IYLTNLF_ REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1 9.38312468134398 0.24977752951804 1 {I|L}N 2 -1 15.969 0 0 1.3952 0 0 165.07347416560816 749.3164766900999 914.3899508557081 0 0 0 0 0 0.5 0 0 0 {I|L}N 1.3952 - 5 + NaN NaN 86910.5 NaN 16036 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19806 81.125 NaN 72857 35 0 5223 0.261 + 26820 SYIEHIFEI 9 46 575.7931595181152 NaN 0 575.792724609375 PEAK HCD FTMS 0 0 0 19798 20645.775390625 0.5571972527034035 -4 0.12802886962890625 8 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 3.944395688203298 0.27613285122220627 1 E 1 8 6.9897 0 0 0.60803 0 0 131.09811187094516 886.4089987952206 1017.5071106661658 0 0 0 0 0 0 0 0 0 + E 0.60803 + + 6 + NaN NaN 100839.1 NaN 16037 3767 19798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19808 81.13 NaN 1777300 35 0 235570 0.327 + 18355 MPLNVADLI 9 104 501.27065617191414 1000.5267594106283 2 501.2712097167969 MULTI HCD FTMS 0 0 0 19807 700128.25 0.7907775519611574 1 -0.0329742431640625 1 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 71.92227651296345 0.008466197542043549 1 YNVAD{I|L}{I|L} 7 3 54.614 0 0 5.4585 0 0 194.11541945625157 0 194.11541945625157 0 42.10847772334131 0 0 0 1.4049471895720984 0 0.5501648626366046 0.3494850021680094 YNVAD{I|L}{I|L} 5.4585 - 515 NaN NaN 362135.7 NaN 16038 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19809 81.134 NaN 601910 35 0 55828 0.261 + 17094 LYLEFLQKF 9 82 600.8367501363738 1199.6589473395475 2 600.8373413085938 MULTI HCD FTMS 0 0 0 19807 411320.59375 0.7023510206834623 4 -0.12164306640625 2 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 114.20165948288297 0.0022564706844261533 1 {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F} 9 0 + 108.07 0 0 9.0088 9.0088 89.523 0 0 0 3.02439471339666 3.02439471339666 3.02439471339666 3.02439471339666 0 3.1989700043360187 1.6989700043360187 0.2742275032520141 1.7302046884880937 + + {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};{I|L}Y{I|L}E{I|L}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};{I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};{I|L}Y{I|L}E{I|L}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}[AG]{I|L}K{M(Oxidation (M))|F} 9.0088;8.7567;8.4071;8.2559;8.2412;8.0082;7.718;7.6395;7.5074;7.2172 +;+;-;-;-;-;-;-;-;- + 1279 + NaN NaN 193940.9 NaN 16039 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19810 81.138 NaN 627000 35 0 125900 0.264 -1 0 62 452.7594248873906 903.5042968415812 2 452.7599182128906 MULTI HCD FTMS 0 0 0 19807 415904.375 1 0 0 3 NaN NaN 1 {I|L}PNVD{I|L} 6 -1 76.692 0 0 8.4883 0 0 0 249.1219881647094 249.1219881647094 47.228408191691344 0 0 0 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0.28872548999643577 {I|L}PNVD{I|L} 8.4883 - 178 + NaN NaN 183621.2 NaN 16040 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19811 81.141 NaN 1225200 35 0 238120 0.261 + 16157 LPVATDFEF 9 75 519.7611007094598 1037.5076484857195 2 519.7611694335938 MULTI HCD FTMS 0 0 0 19807 346502.4375 0.8353145421528408 -1 0.029571533203125 4 Unmodified _LPVATDFEF_ ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B 78.14939416004806 0.006451203201226903 1 ATD{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 55.5 0 0 5.3493 0 0 309.2057158516007 0 309.2057158516007 0 46.54737847600778 0 0 0 2.4361818737241734 0 0.7059771852360797 0 + ATD{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.3493 + + 139 + NaN NaN 265208.5 NaN 16041 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19812 81.145 NaN 683690 35 0 97877 0.261 -1 0 81 566.2978883914894 1130.5812238497788 2 566.2982788085938 MULTI HCD FTMS 0 0 0 19807 244680.796875 0.5138003466770873 29 -0.8338546752929688 5 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 58.694 0 0 5.1915 0 0 291.1578846662125 0 291.1578846662125 0 38.251101524684174 0 0 0 2.6861818737241734 0 0.6382104921644451 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.1915 - 1146 NaN NaN 188067.7 NaN 16042 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19813 81.148 NaN 264610 35 0 45545 0.261 + 30260 VKERNFIIF 9 56 583.3398171601634 1164.6650813871267 2 583.340576171875 MULTI HCD FTMS 0 0 0 19807 133325.625 0.20366908149417476 6 -0.17404937744140625 6 Unmodified _VKERNFIIF_ REV__ENSG00000169302|ENST00000397936|STK32A 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 40.433 0 0 3.4716 0 0 626.34965712715 0 626.34965712715 0 33.44335023848103 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 3.4716 + + 72 NaN NaN 130216.9 NaN 16043 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19814 81.151 NaN 261740 35 0 14521 0.261 + 11933 KFITEFPLF 9 87 571.318856046705 1140.62315916021 2 571.3190307617188 MULTI HCD FTMS 0 0 0 19807 45380.62109375 0.5630140453053857 1 -0.0329742431640625 7 Unmodified _KFITEFPLF_ ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1 26.268140514670165 0.13340543277302316 1 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 7 4 42.479 0 0 3.7242 0 0 278.13238918212886 0 278.13238918212886 0 10.874919553330074 0 0 0 1.774227503252014 0 0 0 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 3.7242 - 1695 + NaN NaN 121745.3 NaN 16044 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19815 81.155 NaN 227690 35 0 63249 0.261 + 17309 LYPQFMFHL 9 55 598.3019807680839 1194.5894086029678 2 598.3025512695312 MULTI HCD FTMS 0 0 0 19807 108155.6328125 0.03949705424016135 55 -1.5584716796875 8 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 11.640296217721598 0.25978676193971967 1 [Y{I|L}][RV]MC 6 6 21.488 0 0 1.7988 0 0 0 426.224210198924 426.224210198924 2.0243935592952766 0 0 0 0 0.5 2 0 0 [Y{I|L}][RV]MC 1.7988 - 87 NaN NaN 114859.5 NaN 16045 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19816 81.158 NaN 352650 35 0 115390 0.261 + 31933 VYPAGFVYI 9 41 514.7760676864423 1027.5375824396845 2 514.7763061523438 MULTI HCD FTMS 0 0 0 19807 110596.1796875 0.5523456146766196 -3 0.09191131591796875 9 Unmodified _VYPAGFVYI_ ACTL6A-ALG3|1|fusion;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3 56.04830969593885 0.023109620888794903 1 [YV][VS]WVY{I|L} 8 4 + 65.495 0 0 6.3739 6.3739 86.992 0 0 0 25.814243664528576 36.05774396488272 25.814243664528576 7.385606273598313 0 1.3494850021680094 1.6989700043360187 0.2614393726401688 0 [YV][VS]WVY{I|L};[YV][QP]{M(Oxidation (M))|F}VY{I|L};[YV][PG]A{M(Oxidation (M))|F}VY{I|L};[YV][PA]G{M(Oxidation (M))|F}VY{I|L};[YV][VS]W{I|L}[YV];[YV][QP]{M(Oxidation (M))|F}{I|L}[YV];[YV][PG]A{M(Oxidation (M))|F}{I|L}[YV];[YV][PA]G{M(Oxidation (M))|F}{I|L}[YV] 6.3739;5.6552;5.4067;5.357;3.8428;3.124;2.8756;2.8258 -;-;-;+;-;-;-;- + 113 NaN NaN 140010.6 NaN 16046 3768 19807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19818 81.163 NaN 620120 35 0 144140 0.327 + 30472 VLTDMEDL 8 67 468.22310253335587 934.4316521335118 2 468.2243347167969 MULTI HCD FTMS 0 0 0 19817 279006.875 0.5406271471581957 1 -0.02292633056640625 1 Unmodified _VLTDMEDL_ REV__tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1 5.230669730166228 0.5342319408533849 1 SA 2 -1 16.198 0 0 1.7334 0 0 0 773.3293684055394 773.3293684055394 3.0102999566398125 0 0 0 0 0 0 0 0 SA 1.7334 - 28 + NaN NaN 178196.5 NaN 16047 3769 19817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19819 81.167 NaN 523740 35 0 67473 0.261 + 13449 KYPENFFLL 9 62 585.8132425088911 1169.6119320845821 2 585.8140258789062 MULTI HCD FTMS 0 0 0 19817 391361.53125 0.001973993241409713 202 -4.957344055175781 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 63.960520009940105 0.0120409805053046 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 73.394 0 0 6.2751 6.2751 88.405 0 0 0 4.628618393527404 38.42863739093026 4.628618393527404 9.208187539523749 0 2.110924374808178 0 0 1.3411290632962718 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.2751;5.4878;4.9015;4.1143;3.9374;3.1502 +;-;-;-;-;- + 446 NaN NaN 158462.8 NaN 16048 3769 19817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19820 81.171 NaN 355620 35 0 109330 0.263 + 21224 PQSPTRHP 8 58 460.23939879386387 918.4642446545278 2 460.7420654296875 MULTI HCD FTMS 0 0 0 19817 122479.984375 0.44903254906682777 1 -0.02292633056640625 3 Unmodified _PQSPTRHP_ HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|53|1|sense 4.75600775471527 0.5349361699807423 1 VG 2 8 7.9588 0 0 0.86653 0 0 112.07943119780607 647.2663057916624 759.3457369894685 0 0 0 0 0 0 0 0 0 VG 0.86653 - 65 + NaN NaN 133618.8 NaN 16049 3769 19817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19821 81.174 NaN 502360 35 0 43404 0.261 + 15149 LMSLIINTF 9 68 534.2939126633656 1066.5732723935312 2 534.2944946289062 MULTI HCD FTMS 0 0 0 19817 189102.921875 0.10558122831336594 12 -0.34107208251953125 4 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 82.5293158979368 0.005033931517079822 1 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 4 62.739 0 0 5.8823 0 0 460.23533401638116 0 460.23533401638116 0 11.996877909158172 0 0 0 1.9749073637206092 0 1.1307196863200843 0 + {I|L}{I|L}NT{M(Oxidation (M))|F} 5.8823 + + 904 + NaN NaN 159797 NaN 16050 3769 19817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19822 81.178 NaN 446520 35 0 79036 0.261 + 18684 MYPAIFDQL 9 72 557.267506181709 1112.520459430218 2 557.2686157226562 MULTI HCD FTMS 0 0 0 19817 149198.734375 0.5974618169117643 -2 0.0625457763671875 5 Oxidation (M) _M(Oxidation (M))YPAIFDQL_ ENSG00000061987|ENST00000393630|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2 99.79894945604345 0.0042691968066200965 1 {I|L}{M(Oxidation (M))|F}DQ{I|L} 5 4 59.411 0 0 5.3402 0 0 478.1870376546304 0 478.1870376546304 0 19.185756335471424 0 0 0 2.3494850021680094 0 1.055462187404089 1.066901560044258 + {I|L}{M(Oxidation (M))|F}DQ{I|L} 5.3402 + + 431 + NaN NaN 158786.4 NaN 16051 3769 19817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19823 81.181 NaN 165710 35 0 11976 0.263 + 28689 TSFTPDSS 8 63 421.18101236246935 840.3474717917387 2 421.17901611328125 MULTI HCD FTMS 0 0 0 19817 81138.1328125 0.86305757467223 1 -0.02292633056640625 6 Unmodified _TSFTPDSS_ ENSG00000175820|ENST00000322527|CCDC168 23.1484247019978 0.4234759064137959 1 {[MG]|[TS]}{M(Oxidation (M))|F}[WD]W 6 4 + 32.166 0 0 3.8277 3.8277 86.594 0 0 0 7.724155302582147 4.220449851406514 4.220449851406514 13.688170986577926 0 0.9247425010840047 0 0.3252574989159953 0 {[MG]|[TS]}{M(Oxidation (M))|F}[WD]W;{[ET]|[MV]}SA[{M(Oxidation (M))|F}T]W;{[MG]|[TS]}[YT][PS]W;{[ET]|[MV]}S{[MG]|[TS]}E{[MG]|[TS]};AA{[{M(Oxidation (M))|F}D]|MM}TE{[MG]|[TS]};{[ET]|[MV]}S[WD]{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}[PS][{M(Oxidation (M))|F}T]W;{[ET]|[MV]}S[WM]{[MG]|[TS]} 3.8277;2.1988;1.5712;0.79199;0.41963;0.29323;0.17852;0.029236 -;-;-;-;-;-;-;- 80 + NaN NaN 108883.2 NaN 16052 3769 19817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19825 81.186 NaN 786590 35 0 36507 0.327 + 30324 VKVSSKSRQ 9 101 509.8036971120352 1017.5928412908704 2 509.8040466308594 MULTI HCD FTMS 0 0 0 19824 489067.34375 0.5794925147341455 6 -0.17713165283203125 1 Unmodified _VKVSSKSRQ_ REV__ENSG00000216937|ENST00000639629|CCDC7;REV__nc|ENSG00000216937|Q96M83-2|CCDC7;REV__nc|ENSG00000216937|Q96M83-3|CCDC7;REV__nc|ENSG00000216937|Q96M83-4|CCDC7;REV__nc|ENSG00000216937|Q96M83-5|CCDC7 3.944395688203298 0.32111559684428237 1 Q 1 -1 5.4846 0 0 0.53897 0 0 519.3251994129688 367.19742420045384 886.5226236134226 0 0 0 0 0 0 0 0 0 Q 0.53897 + + 217 + NaN NaN 214587.6 NaN 16053 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19826 81.19 NaN 698220 35 0 135250 0.261 + 17612 LYYDAIWHF 9 76 614.2951260546212 1226.5756991760422 2 614.2957153320312 MULTI HCD FTMS 0 0 0 19824 257184.28125 0.01123329954620287 35 -1.0007705688476562 2 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 117.59872219059416 0.0017018906413822257 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 91.244 0 0 7.4389 7.4389 86.474 0 0 0 1.642951979966142 1.642951979966142 1.642951979966142 1.642951979966142 0 2.4247425010840047 2 0.9194451763165201 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}ADH{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};{I|L}YY[PG]P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[YQ]H{M(Oxidation (M))|F};[Y{I|L}]ADY[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]AD[WH]Y{I|L}{M(Oxidation (M))|F} 7.4389;7.305;5.8837;5.6278;4.9011;4.5674;4.4769;3.5529;3.346;3.1006 +;+;-;-;-;-;-;-;-;- + 1354 NaN NaN 182176.9 NaN 16054 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19827 81.194 NaN 332030 35 0 17155 0.261 -1 PLILMSIIF 9 92 531.8170912349951 1061.6196295367902 2 531.8175659179688 MULTI HCD FTMS 0 0 0 19824 103545.625 0.31028090523147317 13 -0.3772430419921875 3 Oxidation (M) _PLILM(Oxidation (M))SIIF_ tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1 24.67388899826682 0.14717941214954053 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.005 0 0 2.3554 0 0 783.4576860326871 0 783.4576860326871 0 10.363846624719812 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3554 + + 126 + NaN NaN 133996.5 NaN 16055 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19828 81.197 NaN 241920 35 0 48994 0.261 + 26239 SQAPSIGFPF 10 64 525.767182587457 1049.519812241714 2 525.7808227539062 MULTI HCD FTMS 0 0 0 19824 39566.921875 0.7175627299558807 -1 0.02292633056640625 4 Unmodified _SQAPSIGFPF_ REV__ENSG00000117713|ENST00000324856|ARID1A;REV__nc|ENSG00000117713|O14497-2|ARID1A;REV__nc|ENSG00000117713|O14497-3|ARID1A 9.38312468134398 0.42334543440173333 1 P{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.331 0 0 787.3881421751108 0 787.3881421751108 0 6.76091259055681 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 2.331 + + 47 + NaN NaN 118573 NaN 16056 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19829 81.201 NaN 148910 35 0 11830 0.262 + 28690 TSFTPDSS 8 56 421.18101236246935 840.3474717917387 2 421.1790771484375 MULTI HCD FTMS 0 0 0 19824 78244.2890625 0.8322760705658079 2 -0.06574249267578125 5 Unmodified _TSFTPDSS_ ENSG00000175820|ENST00000322527|CCDC168 23.1484247019978 0.4234759064137959 1 {[MG]|[TS]}{M(Oxidation (M))|F}[WD]W 6 4 + 32.72 0 0 3.8937 3.8937 85.514 0 0 0 10.7306842758112 3.4678748622465605 3.4678748622465605 9.542425094393252 0 0.9247425010840047 0 0.3807196863200844 0 {[MG]|[TS]}{M(Oxidation (M))|F}[WD]W;{[MG]|[TS]}{M(Oxidation (M))|F}T[DV][DG];{[MG]|[TS]}{[{M(Oxidation (M))|F}C]|[YS]}[TP]W;YY[Y{M(Oxidation (M))|F}]W;{[MG]|[TS]}{[{M(Oxidation (M))|F}C]|[YS]}{[QN]|[E{I|L}]|[KN]}AA 3.8937;2.7581;2.2845;1.2763;0.10099 -;-;-;-;- 86 + NaN NaN 103410.5 NaN 16057 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19830 81.204 NaN 367950 35 0 26213 0.261 + 11050 IYFPYVLKI 9 81 578.3441619009734 1154.6737708687467 2 578.3446655273438 MULTI HCD FTMS 0 0 0 19824 50642.91796875 0.10058659564455244 8 -0.236236572265625 6 Unmodified _IYFPYVLKI_ ENSG00000188921|ENST00000495827|HACD4 36.04419817259434 0.08350412372117409 1 [Y{I|L}]{M(Oxidation (M))|F} 3 6 35.062 0 0 3.0365 0 0 0 728.4350373084529 728.4350373084529 13.647255951564077 0 0 0 0 1 1.6989700043360187 0 0 + [Y{I|L}]{M(Oxidation (M))|F} 3.0365 + + 389 NaN NaN 142165.4 NaN 16058 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19831 81.207 NaN 260120 35 0 48480 0.261 + -1 SLYPANYCC 9 65 574.231062648648 1146.447572364096 2 574.2313842773438 MULTI HCD FTMS 0 0 0 19824 114376.140625 0.7191005948828054 -7 0.2135009765625 7 2 Carbamidomethyl (C) _SLYPANYC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000143776|ENST00000366766|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-5|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25|CDC42BPA 1.844237919475145 0.33703635659052655 1 DD 2 -1 18.583 0 0 1.621 0 0 668.2417126134943 245.12912927799064 913.3708418914849 0 0 0 0 0 1 0 0 0 DD 1.621 - 37 + NaN NaN 126760.1 NaN 16059 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19832 81.21 NaN 159140 35 0 9409.6 0.261 + 14547 LFGDYLCLCLL 11 46 636.8217971533026 1271.629041373405 2 636.3209228515625 MULTI HCD FTMS 0 0 0 19824 27753.41015625 0.5532112716962165 -7 0.2135009765625 8 Unmodified _LFGDYLCLCLL_ REV__ENSG00000138111|ENST00000238936|MFSD13A 3.2813086475875832 0.40452996145431686 1 WR{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E] 5 -1 19.208 0 0 1.5105 0 0 488.265700164166 0 488.265700164166 0 12.218487496163561 0 0 0 0 0 0 0 WR{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E] 1.5105 - 34 NaN NaN 121626.7 NaN 16060 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19833 81.214 NaN 108040 35 0 6957.3 0.264 + 7917 GANGKCDR 8 45 410.69067290152935 819.3667928698587 2 410.6908264160156 MULTI HCD FTMS 0 0 0 19824 76360.6640625 0.8403364487331201 -4 0.1083221435546875 9 Unmodified _GANGKCDR_ REV__ENST00000485083.5_1_1:228333617-228333707:+|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97764.7 NaN 16061 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19834 81.217 NaN 105410 35 0 7622 0.261 -1 IYDWMPEQPNI 11 52 474.5522548238431 1420.6349350717294 3 474.55206298828125 MULTI HCD FTMS 0 0 0 19824 56856.68359375 0.838726557358912 2 -0.06574249267578125 10 Oxidation (M) _IYDWM(Oxidation (M))PEQPNI_ ENSG00000125772|ENST00000379019|GPCPD1 4.11662792887243 0.40086653484894175 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 102930.5 NaN 16062 3770 19824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19836 81.222 NaN 1118100 35 0 78787 0.326 + 26377 SSRQKLSPV 9 104 501.2905065387472 1000.5664601442944 2 501.2908020019531 MULTI HCD FTMS 0 0 0 19835 820960.4375 0.5842351474762236 11 -0.30809783935546875 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 10.073929032068715 0.27331982688540024 1 Q 1 -1 10.986 0 0 1.098 0 0 458.2726572300599 411.224209641809 869.4968668718689 0 0 0 0 0 0.7887254899964358 0 0 0 Q 1.098 + + 139 + NaN NaN 254237 NaN 16063 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19837 81.226 NaN 1623400 35 0 375250 0.261 + 21596 PYNPLWAQL 9 86 551.2895982177552 1100.5646435023102 2 551.2902221679688 MULTI HCD FTMS 0 0 0 19835 737503.1875 0.9945998518726927 -1 0.0362091064453125 2 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 78.14939416004806 0.006451203201226903 1 W[KA]WAQ{I|L} 7 5 46.616 0 0 4.2356 0 0 199.09576613593907 0 199.09576613593907 0 31.131222656270552 0 0 0 1.5 0 0 0.6421590589602533 W[KA]WAQ{I|L} 4.2356 - 1505 NaN NaN 323043 NaN 16064 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19838 81.23 NaN 740950 35 0 47998 0.261 + 10721 IQLDDAEAQL 10 104 558.2808278539845 1114.547102774769 2 558.7670288085938 MULTI HCD FTMS 0 0 0 19835 37138.43359375 0.9196106648631897 -1 0.0362091064453125 3 Unmodified _IQLDDAEAQL_ REV__ENSG00000090615|ENST00000450791|GOLGA3;REV__nc|ENSG00000090615|Q08378-2|GOLGA3 24.990960013464015 0.27735500881591096 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}Q{I|L} 9 -1 + 62.004 0 0 5.5631 5.5631 83.401 0 0 0 8.239087409443187 8.239087409443187 8.239087409443187 2.314309196763702 0 0.3807196863200844 2 1.0114393726401687 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[HC]Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]{M(Oxidation (M))|F}AQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[HC]{I|L}Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}E{I|L}DYG{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[HC]E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[HC][AG]{I|L};[QA]{[DA]|[EG]}D{I|L}E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]{M(Oxidation (M))|F}A[AG]{I|L} 5.5631;5.3555;5.1237;4.9554;4.8239;4.737;4.7311;4.5293;4.4118;4.2975 -;-;-;-;-;-;-;-;-;- 6534 NaN NaN 203575.1 NaN 16065 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19839 81.233 NaN 295050 35 0 26684 0.264 -1 0 82 403.73934617271607 805.4641394122322 2 403.7396545410156 MULTI HCD FTMS 0 0 0 19835 150194.40625 0.8182720288884755 -3 0.09210968017578125 4 NaN NaN 1 Y{M(Oxidation (M))|F} 2 -1 13.188 0 0 1.6373 0 0 477.3134004405114 0 477.3134004405114 0 8.58349385648225 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.6373 - 44 + NaN NaN 131582.9 NaN 16066 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19840 81.237 NaN 623730 35 0 71763 0.261 + 23783 RRNLMECTM 9 92 577.2666893885627 1152.5188258439252 2 577.2675170898438 MULTI HCD FTMS 0 0 0 19835 325130.90625 0.4734302776915733 -4 0.12168121337890625 5 Unmodified _RRNLMECTM_ REV__ENSG00000151617|ENST00000651419|EDNRA;REV__nc|ENSG00000151617|P25101-4|EDNRA;REV__nc|ENSG00000151617|P25101-5|EDNRA 30.636539890814138 0.10832830463492794 1 {I|L}PVD[{M(Oxidation (M))|F}V]ED 8 -1 56.697 0 0 4.9194 0 0 0 235.0654238336547 235.0654238336547 41.96292898314843 0 0 0 0 2.031234684152075 0 1.5941876774005248 0 {I|L}PVD[{M(Oxidation (M))|F}V]ED 4.9194 - 298 + NaN NaN 176677.5 NaN 16067 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19841 81.24 NaN 330660 35 0 42373 0.261 + 23144 RFILNLPTF 9 74 560.8295653499299 1119.6445777666597 2 560.8296508789062 MULTI HCD FTMS 0 0 0 19835 124039.7421875 0.017923339300687763 33 -0.9350662231445312 6 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 34.40172386719151 0.0910440009062557 1 [YV]T{I|L} 4 8 45.93 0 0 4.1022 0 0 0 640.3582430474906 640.3582430474906 27.078343878162343 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 [YV]T{I|L} 4.1022 - 240 NaN NaN 133919.1 NaN 16068 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19842 81.243 NaN 236810 35 0 42388 0.261 + 1779 CLSLTVLGFA 10 65 512.2814807207097 1022.5484085082195 2 512.281982421875 MULTI HCD FTMS 0 0 0 19835 52999.2265625 0.4236703401952609 10 -0.2819366455078125 7 Unmodified _CLSLTVLGFA_ REV__ENSG00000111850|ENST00000392863|SMIM8 10.073929032068715 0.4168838835836452 1 {I|L}YV 3 -1 7.5359 0 0 0.73697 0 0 130.07405655685062 514.2265108697874 644.300567426638 0 0 0 0 0 0 0 0 0 {I|L}YV 0.73697 - 114 + NaN NaN 122941.9 NaN 16069 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19843 81.247 NaN 596960 35 0 87856 0.261 + 3927 EPTLELMAYPA 11 94 617.8023406098447 NaN 0 617.7882080078125 PEAK HCD FTMS 0 0 0 19835 25628.419921875 1 0 0 8 Unmodified _EPTLELMAYPA_ REV__ENSG00000132518|ENST00000254854|GUCY2D 17.11289562659939 0.27893181706115244 1 EP{M(Oxidation (M))|F}[C(Carbamidomethyl (C))D]P 6 -1 15.138 0 0 1.2272 0 0 131.12423710161926 354.1668729721354 485.2911100737547 0 0 0 0 0 0 0 0.2742275032520141 0 EP{M(Oxidation (M))|F}[C(Carbamidomethyl (C))D]P 1.2272 - 1329 + NaN NaN 176162.7 NaN 16070 3771 19835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19845 81.252 NaN 3182500 35 0 349730 0.327 + 17884 MILELDPTF 9 93 547.7754511214581 1093.5363493097161 2 547.776123046875 MULTI HCD FTMS 0 0 0 19844 1923532.25 0.7988611591370368 -6 0.17406463623046875 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 111.06 0 0 10.156 10.156 97.998 0 0 0 22.561872774590398 44.48104871308642 22.561872774590398 32.774334638038454 0 2.9604093769761874 1.6989700043360187 1.5871804965004639 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}E{I|L};[TP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}E{I|L}E{I|L};[TP]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]E{I|L}E{I|L} 10.156;7.1589;7.0499;6.7238;5.9913;5.9546;5.8771;4.8032;4.7649;4.5366 +;-;-;-;-;-;-;-;-;- + 3201 NaN NaN 561471.7 NaN 16071 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19846 81.256 NaN 1003000 35 0 531200 0.262 + 21004 PLNVDLVL 8 46 441.76822041505295 881.5218878969059 2 441.7685241699219 MULTI HCD FTMS 0 0 0 19844 916963.5625 0.23488242892426936 4 -0.11138916015625 2 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 52.268347100219714 0.11372384022409306 1 VD{I|L}V{I|L} 5 -1 60.745 0 0 6.891 0 0 324.1783924787125 0 324.1783924787125 0 42.81357210935475 0 0 0 2.305462187404089 0 0.4247425010840047 0 VD{I|L}V{I|L} 6.891 + + 56 NaN NaN 233103.5 NaN 16072 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19847 81.26 NaN 490000 35 0 116260 0.261 + 34326 YPEDFAIDL 9 61 541.7556731775937 1081.4967934219874 2 541.7559204101562 MULTI HCD FTMS 0 0 0 19844 221424.859375 0.5360690834730514 4 -0.11138916015625 3 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 30.636539890814138 0.10832830463492794 1 YA{I|L}D{I|L} 5 4 49.949 0 0 4.6185 0 0 488.1960621564469 0 488.1960621564469 0 19.24865027867405 0 0 0 1.5 0 0 0 YA{I|L}D{I|L} 4.6185 - 42 NaN NaN 157382.8 NaN 16073 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19848 81.263 NaN 829780 35 0 175910 0.261 + 26624 SWPDWALPRL 10 65 620.8271632702259 1239.6397736072518 2 620.82763671875 MULTI HCD FTMS 0 0 0 19844 371014.5 0.22220866329867997 -6 0.17406463623046875 4 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 71.70789743142352 0.01556163018108538 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 84.927 0 0 6.8509 6.8509 88.422 0 0 0 17.78151250383644 73.95750937337162 17.78151250383644 8.57840941039747 0 2.853917193908117 1.6989700043360187 1.274227503252014 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}PWDA{I|L}PR{I|L};[DP]WSWA{I|L}PR{I|L} 6.8509;6.1589;5.255 +;-;- + 373 NaN NaN 219772.4 NaN 16074 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19849 81.266 NaN 548860 35 0 70656 0.263 + 1020 AYGASFLSF 9 57 481.7344463774927 961.4543398217854 2 481.73468017578125 MULTI HCD FTMS 0 0 0 19844 198874.59375 0.4825586976530038 -3 0.0886688232421875 5 Unmodified _AYGASFLSF_ ENSG00000159596|ENST00000372025|TMEM69 147.8311659463005 1.1118996804784084E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9 0 + 108.16 0 0 11.249 11.249 91.809 0 0 0 19.621892823592972 94.0018312907727 19.621892823592972 5.201812293369841 0 3.1549471895720984 1.3979400086720375 1.579689690656103 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YQ]AS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YQ]TG{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[NG][HK]{[ES]|[DT]|[{I|L}C]} 11.249;10.708;9.0388;7.3235;1.3047 +;-;-;-;- + 254 NaN NaN 159563 NaN 16075 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19850 81.27 NaN 401290 35 0 23922 0.261 + 27666 TALNLFFKL 9 70 533.8181474268462 1065.6217419204922 2 533.8185424804688 MULTI HCD FTMS 0 0 0 19844 94179.7109375 0.39939433214691217 10 -0.278564453125 6 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 90.13494162714682 0.004522430935000059 1 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 82.16 0 0 7.7101 7.7101 94.065 0 0 0 21.870966460799067 35.21849499867996 21.870966460799067 20.31743128760553 0 2.392159058960253 1.0969100130080565 0.6139829889124311 1.110924374808178 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QS]|[NT]}[{I|L}A]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}A{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{I|L}A{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{I|L}A{M(Oxidation (M))|F}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}KA{M(Oxidation (M))|F}K{I|L};[TA][KP][YV]{M(Oxidation (M))|F}K{I|L} 7.7101;5.8034;4.8955;4.352;4.1648;3.6051;3.3007;3.0401;2.8749;1.9643 +;-;-;-;-;-;-;-;-;- + 1205 NaN NaN 146929.2 NaN 16076 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19851 81.273 NaN 410580 35 0 50306 0.261 + 23145 RFILNLPTF 9 92 560.8295653499299 1119.6445777666597 2 560.8294067382812 MULTI HCD FTMS 0 0 0 19844 83495.1875 0.012064783021516578 34 -0.96453857421875 7 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 45.69961567697781 0.039180348357221985 1 [YV]T{I|L} 4 8 45.93 0 0 4.1022 0 0 0 640.3565585469946 640.3565585469946 26.197887582883936 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 [YV]T{I|L} 4.1022 - 751 NaN NaN 152116.8 NaN 16077 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19852 81.276 NaN 182810 35 0 17930 0.261 + -1 LPCLGPGPCF 10 55 530.7519045345862 1059.4892561359723 2 530.7521362304688 MULTI HCD FTMS 0 0 0 19844 74945.78125 0.7313996689547065 3 -0.0818939208984375 8 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))LGPGPCF_ REV__ENSG00000227059|ENST00000545940|ANHX 18.13498045792455 0.3414835283589826 1 {I|L}PVA 4 -1 50.165 0 0 4.7348 0 0 0 676.2230318658811 676.2230318658811 30.43305028184122 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 {I|L}PVA 4.7348 - 18 + NaN NaN 102168.1 NaN 16078 3772 19844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19854 81.281 NaN 283240 35 0 16045 0.327 + 3602 EKLGPKQVF 9 86 523.3037906164145 NaN 0 523.3037109375 PEAK HCD FTMS 0 0 0 19853 154505.84375 0.26721625884579914 16 -0.44936370849609375 1 Unmodified _EKLGPKQVF_ REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF 10.073929032068715 0.24642998803896465 1 VT 2 -1 17.519 0 0 1.6771 0 0 176.1059157524649 665.3273230165465 841.4332387690115 0 0 0 0 0 0.5 0 0.3054621874040891 0 VT 1.6771 - 66 + NaN NaN 122026.5 NaN 16079 3773 19853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19855 81.286 NaN 314010 35 0 83020 0.261 -1 0 56 492.7255397956059 983.4365266580119 2 492.72589111328125 MULTI HCD FTMS 0 0 0 19853 136127.546875 0.7153189099210134 -1 0.029571533203125 2 NaN NaN 1 AYGAS{M(Oxidation (M))|F}{I|L} 7 -1 78.665 0 0 7.9989 0 0 0 271.07026086978755 271.07026086978755 49.20055737786221 0 0 0 0 1.5356668758921828 2 0.4247425010840047 0 AYGAS{M(Oxidation (M))|F}{I|L} 7.9989 - 285 + NaN NaN 132851.8 NaN 16080 3773 19853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19856 81.289 NaN 115360 35 0 10385 0.261 -1 0 51 479.27757849525995 956.5406040573199 2 479.2774963378906 MULTI HCD FTMS 0 0 0 19853 103823.03125 1 0 0 3 NaN NaN 1 T{M(Oxidation (M))|F} 2 -1 17.435 0 0 1.8227 0 0 690.41409146142 0 690.41409146142 0 9.776296993281406 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 1.8227 - 42 + NaN NaN 101432.3 NaN 16081 3773 19853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19857 81.292 NaN 131580 35 0 26252 0.261 -1 0 40 452.7594248873906 903.5042968415812 2 452.7596740722656 MULTI HCD FTMS 0 0 0 19853 47509.91015625 0.11423277323363093 5 -0.14092254638671875 4 NaN NaN 1 {I|L}P{[NV]|[RG]}D 5 -1 41.198 0 0 4.5598 0 0 0 362.2054842584594 362.2054842584594 34.20818753952375 0 0 0 0 0.9247425010840047 1.3979400086720375 0.4247425010840047 0 {I|L}P{[NV]|[RG]}D 4.5598 - 7 + NaN NaN 105963.2 NaN 16082 3773 19853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19858 81.296 NaN 127960 35 0 10214 0.261 + 17095 LYLEFLQKF 9 58 600.8367501363738 1199.6589473395475 2 600.837158203125 MULTI HCD FTMS 0 0 0 19853 31491.958984375 0.05377413597103054 9 -0.248992919921875 5 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 47.594388314883695 0.03493607795751234 1 [Y{I|L}]{I|L}E{I|L}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F} 9 2 + 69.134 0 0 5.7628 5.7628 87.568 0 0 0 48.165023049518794 13.256886463274284 13.256886463274284 9.208187539523749 0 2.1989700043360187 1.6989700043360187 0 1.4247425010840047 [Y{I|L}]{I|L}E{I|L}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{I|L}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F};[RH]Q{I|L}{M(Oxidation (M))|F}[K{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[RH][AG]{I|L}{M(Oxidation (M))|F}[K{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.7628;4.9952;1.9134;1.1458 -;-;-;- 196 + NaN NaN 102220.8 NaN 16083 3773 19853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19859 81.299 NaN 118160 35 0 15308 0.261 + 32785 WSELSGLALL 10 57 544.8034480652929 1087.5923431973856 2 544.80322265625 MULTI HCD FTMS 0 0 0 19853 33597.30078125 0.5254875459172589 -1 0.029571533203125 6 Unmodified _WSELSGLALL_ REV__ENSG00000124116|ENST00000243938|WFDC3 18.1463463914782 0.3413772152514074 1 Q{I|L}{I|L}{I|L} 4 -1 41.983 0 0 3.8601 0 0 602.2718373029312 0 602.2718373029312 0 26.49797211252192 0 0 0 1.305462187404089 0 0 0 Q{I|L}{I|L}{I|L} 3.8601 - 81 NaN NaN 92418.5 NaN 16084 3773 19853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19861 81.304 NaN 578100 35 0 78328 0.327 + 13450 KYPENFFLL 9 66 585.8132425088911 1169.6119320845821 2 585.8134765625 MULTI HCD FTMS 0 0 0 19860 369651 0.0018644872257877077 207 -5.0713043212890625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 71.603 0 0 6.1219 6.1219 88.153 0 0 0 4.722346674414339 38.837258228914706 4.722346674414339 9.208187539523749 0 2.142159058960253 0 0 1.1307196863200843 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}{M(Oxidation (M))|F} 6.1219;5.3346;4.9719;4.1846;4.0111;3.2238;3.0771;1.927;0.96628 +;-;-;-;-;-;-;-;- + 392 NaN NaN 177250.5 NaN 16085 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19862 81.308 NaN 772580 35 0 108760 0.261 -1 0 91 566.2978883914894 1130.5812238497788 2 566.2978515625 MULTI HCD FTMS 0 0 0 19860 275027.28125 0.5775243266192946 35 -1.00067138671875 2 NaN NaN 1 S[HT]K{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 45.213 0 0 3.9991 0 0 266.12632949043126 0 266.12632949043126 0 3.7628749457997657 0 0 0 1.579689690656103 0 0.5866968715561641 0.3494850021680094 S[HT]K{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.9991 - 1405 NaN NaN 195957.2 NaN 16086 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19863 81.312 NaN 249140 35 0 79404 0.261 + 31934 VYPAGFVYI 9 42 514.7760676864423 1027.5375824396845 2 514.7763671875 MULTI HCD FTMS 0 0 0 19860 115663.515625 0.5776531867019823 3 -0.085205078125 3 Unmodified _VYPAGFVYI_ ACTL6A-ALG3|1|fusion;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3 45.7499826716795 0.03894913563566938 1 [YV][VS]WVY{I|L} 8 4 + 59.87 0 0 5.8266 5.8266 90.112 0 0 0 16.00833760139686 16.00833760139686 16.00833760139686 16.00833760139686 0 1.3494850021680094 1.6989700043360187 0 0 [YV][VS]WVY{I|L};[YV][QP]{M(Oxidation (M))|F}VY{I|L} 5.8266;4.2686 -;- 122 NaN NaN 128652.2 NaN 16087 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19864 81.315 NaN 141380 35 0 20736 0.261 + 24224 RYFLPPYTF 9 46 602.3135266082954 1202.6125002833908 2 602.3140869140625 MULTI HCD FTMS 0 0 0 19860 45773.38671875 0.6320527248417601 39 -1.1087188720703125 4 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 22.736283301280096 0.1639198954644489 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 31.695 0 0 2.6355 0 0 579.3164389851049 0 579.3164389851049 0 31.694699959806982 0 0 0 1.4247425010840047 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.6355 + + 11 NaN NaN 97074.2 NaN 16088 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19865 81.319 NaN 115940 35 0 9019.2 0.261 + -1 RNDGEAMTEPI 11 57 624.7772652739313 1247.5399776146626 2 624.777099609375 MULTI HCD FTMS 0 0 0 19860 69536.4140625 0.7452754094712111 -1 0.02283477783203125 5 Oxidation (M) _RNDGEAM(Oxidation (M))TEPI_ REV__ENST00000566391.1_1_16:18810021-18812824:-|nuORF;REV__ENST00000569976.5_1_16:18806770-18812824:-|nuORF 10.799506525563784 0.36298595732910816 1 {M(Oxidation (M))|F}[EP]{I|L} 4 -1 17.92 0 0 1.4364 0 0 743.2866688459 0 743.2866688459 0 9.490925311194188 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}[EP]{I|L} 1.4364 - 39 NaN NaN 99284.6 NaN 16089 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19866 81.322 NaN 173070 35 0 13730 0.261 + 20188 NYLDRFLSL 9 67 570.8066711926549 1139.5987894521097 2 570.8067016601562 MULTI HCD FTMS 0 0 0 19860 54079.1171875 0.1827753041455171 17 -0.49596405029296875 6 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 24.990960013464015 0.14443998892849796 1 [YN]{I|L} 3 6 32.932 0 0 2.8898 0 0 0 746.3857516925972 746.3857516925972 8.979400086720375 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 2.8898 + + 148 NaN NaN 108965.1 NaN 16090 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19867 81.325 NaN 65444 35 0 5624.6 0.261 -1 WGLLLMIL 8 37 487.79057295431755 973.5665929754351 2 487.79071044921875 MULTI HCD FTMS 0 0 0 19860 46242.00390625 0.8082515588160673 3 -0.085205078125 7 Oxidation (M) _WGLLLM(Oxidation (M))IL_ ENSG00000100197|ENST00000645361|CYP2D6;ENST00000433633.1_1_22:42546889-42547480:-|nuORF;nc|ENSG00000100197|P10635-2|CYP2D6;nc|ENSG00000205702|A0A087X1C5|CYP2D7 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 2.7642 0 0 0.28393 0 0 503.386338924457 354.0763338678344 857.4626727922914 0 0 0 0 0 0 0 0 0 {I|L} 0.28393 + + 2 + NaN NaN 90334.1 NaN 16091 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19868 81.329 NaN 144300 35 0 44726 0.261 + 17521 LYTYKFTYN 9 33 606.8006499227157 1211.5867469122313 2 606.8038940429688 MULTI HCD FTMS 0 0 0 19860 26620.23828125 0.17291404157885362 -22 0.6449966430664062 8 Unmodified _LYTYKFTYN_ tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.5769 0 0 130.1122118553938 931.4128733738684 1061.5250852292622 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.5769 + + 14 + NaN NaN 102002 NaN 16092 3774 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19870 81.333 NaN 532940 35 0 23284 0.327 + 15284 LPAFIMITL 9 79 509.8036971120352 1017.5928412908704 2 509.803955078125 MULTI HCD FTMS 0 0 0 19869 525136.6875 0.6222308307996369 11 -0.31496429443359375 1 Unmodified _LPAFIMITL_ tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1 2.0597508629832335 0.3354026079994024 1 D 1 9 8.3718 0 0 0.82271 0 0 105.0789845385029 794.4411715143186 899.5201560528216 0 0 0 0 0 0.28872548999643577 0 0.3494850021680094 0 D 0.82271 - 71 + NaN NaN 162292.5 NaN 16093 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19871 81.338 NaN 602380 35 0 114100 0.261 + 33489 YIAWVMLTKC 10 75 614.3170542687037 NaN 0 614.2957153320312 PEAK HCD FTMS 0 0 0 19869 8323.8330078125 0.3858240917300812 -5 0.14763641357421875 2 Unmodified _YIAWVMLTKC_ ENST00000467707.1_1_9:128116999-128121864:+|nuORF 11.494710602746466 0.33034640988000663 1 YYDE 4 9 21.696 0 0 1.7688 0 0 113.12743472392192 540.2798555963499 653.4072903202718 0 0 0 0 0 0 0 0.3252574989159953 0 YYDE 1.7688 - 444 + NaN NaN 178838.2 NaN 16094 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19872 81.341 NaN 467430 35 0 63003 0.261 + 17129 LYLPMISIL 9 81 531.8170912349951 1061.6196295367902 2 531.8173217773438 MULTI HCD FTMS 0 0 0 19869 79393.4765625 0.23790749031923125 18 -0.5188751220703125 3 Unmodified _LYLPMISIL_ TRMT5|p.I314Kfs*24|1|0.09|ENSG00000126814|chr14:60975963-60975978|TTCTTTGCTACTGGAA/-|frameshift_variant 4.75600775471527 0.31496297302216103 1 VS{I|L}RA 5 8 23.188 0 0 2.1842 0 0 517.3246327130875 0 517.3246327130875 0 6.197887582883936 0 0 0 0 0 0 0 VS{I|L}RA 2.1842 - 109 NaN NaN 153563.5 NaN 16095 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19873 81.345 NaN 216200 35 0 18120 0.261 + 33884 YLMTDEELI 9 62 563.7721746415386 NaN 0 563.7579345703125 PEAK HCD FTMS 0 0 0 19869 8614.6376953125 0.4051977398119609 -13 0.384063720703125 4 Unmodified _YLMTDEELI_ tr|U7STA2|U7STA2_FUSNUTransposaseIS4-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01277PE=4SV=1 11.640296217721598 0.23883959125015683 1 YD{M(Oxidation (M))|F} 3 7 12.435 0 0 1.1048 0 0 165.11349833370474 532.2423189752561 697.3558173089609 0 0 0 0 0 0 0 0.4247425010840047 0 YD{M(Oxidation (M))|F} 1.1048 - 289 + NaN NaN 112321 NaN 16096 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19874 81.348 NaN 326110 35 0 35314 0.261 + 3860 EPIWNEVGL 9 76 528.7710162575994 1055.5274795819987 2 528.7713623046875 MULTI HCD FTMS 0 0 0 19869 76007.640625 0.4548388294201397 -3 0.0818939208984375 5 Unmodified _EPIWNEVGL_ ENSG00000166479|ENST00000299608|TMX3;nc|ENSG00000166479|Q96JJ7-2|TMX3;TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant 40.23920728925047 0.06424668180817725 1 EVG{I|L} 4 5 43.136 0 0 4.0867 0 0 639.3022938459 0 639.3022938459 0 12.703037561203843 0 0 0 1.2614393726401687 0 0.6109243748081782 0 + EVG{I|L} 4.0867 + + 613 NaN NaN 139124.2 NaN 16097 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19875 81.351 NaN 316240 35 0 20065 0.261 + -1 IMLENVAEAA 10 71 538.7677298780526 1075.520906822905 2 539.2677612304688 MULTI HCD FTMS 0 0 0 19869 48337.56640625 0.7885326592479294 -4 0.11142730712890625 6 Oxidation (M) _IM(Oxidation (M))LENVAEAA_ REV__tr|U7SUB5|U7SUB5_FUSNUGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpsAPE=3SV=1 24.990960013464015 0.27735500881591096 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DQQA 9 -1 + 56.136 0 0 5.2195 5.2195 61.974 0 0 0 3.0493333287343347 3.0493333287343347 3.0493333287343347 0 0 2.3494850021680094 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DQQA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[KQ]A;[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}[NG]A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E[NG]{I|L}A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}[NG]A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE[NG]{I|L}A;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}[NG]A 5.2195;5.2195;4.9359;4.8934;4.822;4.8008;4.7795;4.7623;4.7411;4.7198 -;-;-;-;-;-;-;-;-;- 629 NaN NaN 130303.7 NaN 16098 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19876 81.355 NaN 114440 35 0 10872 0.261 -1 MPLSEDFVWM 10 48 643.7752277468494 1285.5359025604987 2 643.7762451171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _M(Oxidation (M))PLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 6.723162845929126 0.4397169348982109 1 W{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0201 0 0 934.4112891087912 0 934.4112891087912 0 -4.463950151760656 -4.463950151760656 0 0 0.5 0 0 0 W{M(Oxidation (M))|F} 2.0201 + + 23 NaN NaN 108064 NaN 16099 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19877 81.358 NaN 132230 35 0 9776.6 0.261 + 29139 TYIKFINLF 9 60 579.8315935249233 1157.6486341166465 2 579.8316650390625 MULTI HCD FTMS 0 0 0 19869 49479.12109375 0.0579931752713845 34 -0.9711837768554688 8 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 33.4449034751529 0.0954363425218424 1 [YT]K{I|L}T 5 5 43.258 0 0 3.7367 0 0 0 548.2981051080686 548.2981051080686 17.28855930516417 0 0 0 0 0.7059771852360797 2 0 0 [YT]K{I|L}T 3.7367 - 63 + NaN NaN 99338.2 NaN 16100 3775 19869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19879 81.363 NaN 994550 35 0 43714 0.327 + 26378 SSRQKLSPV 9 104 501.2905065387472 1000.5664601442944 2 501.2907409667969 MULTI HCD FTMS 0 0 0 19878 933979.8125 0.6646652001373126 16 -0.45987701416015625 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 6.2057823575117 0.30397260197431997 1 Q 1 -1 11.479 0 0 1.1473 0 0 458.27299708573054 411.22341659884717 869.4964136845776 0 0 0 0 0 0.75 0 0 0 Q 1.1473 + + 179 + NaN NaN 252113.8 NaN 16101 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19880 81.367 NaN 97895 35 0 13754 0.261 + 15582 LPDVLIIHL 9 42 516.8260431084747 1031.6375332837492 2 516.826171875 MULTI HCD FTMS 0 0 0 19878 33398.04296875 0.261946654898638 5 -0.14101409912109375 2 Unmodified _LPDVLIIHL_ ENSG00000103404|ENST00000219689|USP31 39.957323273324995 0.06554068735427583 1 {I|L}PDV{I|L}{I|L}{I|L}H{I|L} 9 0 + 33.311 0 0 3.2289 3.2289 88.162 0 0 0 23.266603059580298 0.12333735073725194 0.12333735073725194 33.310924976981376 0 1.9731975075880328 0 0.4247425010840047 0 + + {I|L}PDV{I|L}{I|L}{I|L}H{I|L} 3.2289 + + 71 + NaN NaN 95127.8 NaN 16102 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19881 81.371 NaN 290840 35 0 41473 0.261 + 16426 LSLRLLSIF 9 57 531.3385284550741 NaN 0 531.3523559570312 PEAK HCD FTMS 0 0 0 19878 16732.310546875 1 0 0 3 Unmodified _LSLRLLSIF_ REV__ENSG00000163719|ENST00000296003|MTMR14;REV__ENST00000414996.1_1_3:9710441-9730764:+|nuORF;REV__ENST00000447144.5_1_3:9714379-9730718:+|nuORF;REV__nc|ENSG00000163719|Q8NCE2-2|MTMR14;REV__nc|ENSG00000163719|Q8NCE2-3|MTMR14 7.289230182591677 0.2599242500475609 1 {I|L}{I|L}S 3 -1 13.188 0 0 1.2433 0 0 131.06771535570277 613.3720982884945 744.4398136441973 0 0 0 0 0 0 0 0 0 {I|L}{I|L}S 1.2433 + + 20 + NaN NaN 143828.2 NaN 16103 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19882 81.374 NaN 318670 35 0 63174 0.261 + -1 WGAMFQTTCS 10 68 574.231062648648 1146.447572364096 2 574.2312622070312 MULTI HCD FTMS 0 0 0 19878 126796.1953125 0.7971874114640781 -1 0.0294952392578125 4 Oxidation (M) _WGAM(Oxidation (M))FQTTCS_ REV__ENST00000392038.6_1_19:40738259-40738439:-|nuORF 3.2813086475875832 0.45793521633868084 1 D{I|L} 2 -1 19.464 0 0 1.6978 0 0 363.17818501981395 552.1353853815061 915.31357040132 0 0 0 0 0 1 0 0 0 D{I|L} 1.6978 - 55 + NaN NaN 124917.5 NaN 16104 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19883 81.378 NaN 129690 35 0 17268 0.262 -1 SAPCHGPPL 9 55 468.22310253335587 934.4316521335118 2 468.22406005859375 MULTI HCD FTMS 0 0 0 19878 32602.119140625 0.06317260340738091 8 -0.22301483154296875 5 Carbamidomethyl (C) _SAPC(Carbamidomethyl (C))HGPPL_ ENSG00000275395|ENST00000616721|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP 4.75600775471527 0.31496297302216103 1 N 1 -1 5.401 0 0 0.578 0 0 609.3186283071431 208.04172693424064 817.3603552413837 0 0 0 0 0 0.3807196863200844 0 0 0 N 0.578 - 5 + NaN NaN 113139.3 NaN 16105 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19884 81.381 NaN 81961 35 0 5020.1 0.261 + 19159 NHFAAGGF 8 54 410.69067290152935 819.3667928698587 2 410.6909484863281 MULTI HCD FTMS 0 0 0 19878 44479.34375 0.48948780406442916 2 -0.05910491943359375 6 Unmodified _NHFAAGGF_ ENSG00000085276|ENST00000651503|MECOM;MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112|MECOM 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8898 0 0 654.2875672612635 0 654.2875672612635 0 -3.1875876262441274 -3.1875876262441274 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8898 + + 5 + NaN NaN 98363.4 NaN 16106 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19885 81.384 NaN 105170 35 0 17505 0.261 + 15325 LPATIGDLI 9 47 456.7732707231414 911.5319885130829 2 456.77362060546875 MULTI HCD FTMS 0 0 0 19878 41760.34375 0.6441475720723701 -2 0.05898284912109375 7 Unmodified _LPATIGDLI_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 19.256988751693697 0.19398022840297344 1 {I|L}[DG]{I|L}{I|L} 5 4 33.328 0 0 3.6562 0 0 382.2219410626969 0 382.2219410626969 0 17.314761492627255 0 0 0 1.4604093769761874 0 0 0 + {I|L}[DG]{I|L}{I|L} 3.6562 + + 43 NaN NaN 94722.2 NaN 16107 3776 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19887 81.389 NaN 3016100 35 0 352490 0.327 + 17885 MILELDPTF 9 96 547.7754511214581 1093.5363493097161 2 547.7759399414062 MULTI HCD FTMS 0 0 0 19886 2127036.5 0.883378401332645 -1 0.02622222900390625 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 111.68 0 0 10.213 10.213 95.834 0 0 0 21.9371790915489 57.4833978319578 21.9371790915489 13.226576900918644 0 2.9916440611282624 2 1.6184151806525389 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{I|L}DPT{M(Oxidation (M))|F};[VP]{I|L}E{I|L}[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F};[VP]{I|L}E{I|L}T[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]{I|L}[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]{I|L}T[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 10.213;9.0036;6.2159;3.4398;2.5941;2.4379;0.97164;0.12595 +;-;-;-;-;-;-;- + 2543 NaN NaN 544648.2 NaN 16108 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19888 81.394 NaN 635530 35 0 84596 0.261 + 23784 RRNLMECTM 9 92 577.2666893885627 1152.5188258439252 2 577.2672729492188 MULTI HCD FTMS 0 0 0 19886 428904.8125 0.6245377495087864 2 -0.05908203125 2 Unmodified _RRNLMECTM_ REV__ENSG00000151617|ENST00000651419|EDNRA;REV__nc|ENSG00000151617|P25101-4|EDNRA;REV__nc|ENSG00000151617|P25101-5|EDNRA 24.020572477871973 0.15282392193088168 1 {I|L}PVD[{M(Oxidation (M))|F}V]E{I|L} 8 -1 54.123 0 0 4.696 0 0 0 237.00007044010002 237.00007044010002 39.42979712652914 0 0 0 0 2.004432191740108 0 1 0 {I|L}PVD[{M(Oxidation (M))|F}V]E{I|L} 4.696 - 475 + NaN NaN 183542.3 NaN 16109 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19889 81.397 NaN 676200 35 0 103030 0.261 + 32874 WYGWHFPEL 9 90 617.7877452384971 1233.5609375437941 2 617.7880859375 MULTI HCD FTMS 0 0 0 19886 391296.78125 0.643360201542914 2 -0.05908203125 3 Unmodified _WYGWHFPEL_ ENSG00000055044|ENST00000264279|NOP58 97.07464715276575 0.004340583992084827 1 [WY]GWH{M(Oxidation (M))|F}PE{I|L} 9 0 + 75.092 0 0 6.0874 6.0874 91.482 0 0 0 6.114328194166561 57.435464932947724 6.114328194166561 23.34752853788089 0 2.1549471895720984 2 0 0 + + [WY]GWH{M(Oxidation (M))|F}PE{I|L};[WY]G[PG][C(Carbamidomethyl (C))R]PE{I|L};[WY][NP][C(Carbamidomethyl (C))R]PE{I|L};{[QN]|[E{I|L}]|[KN]}[YV]HWG[DC]{I|L};[WY]G[HQ]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GK;[WY]G[YT][R{M(Oxidation (M))|F}]NK;[WY]G[YT][R{M(Oxidation (M))|F}]GGK;[MN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}H{M(Oxidation (M))|F}PNQ;[MN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}H{M(Oxidation (M))|F}PGGK;{[QN]|[E{I|L}]|[KN]}[YV]HW[C(Carbamidomethyl (C))D]{I|L} 6.0874;4.1947;3.6259;3.2909;3.0882;2.5369;2.4998;2.4285;2.395;2.1338 +;-;-;-;-;-;-;-;-;- + 1232 NaN NaN 190135.9 NaN 16110 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19890 81.401 NaN 634730 35 0 41777 0.261 + 34753 YPYLTSPEF 9 95 558.7665682002983 1115.5185834673964 2 558.7670288085938 MULTI HCD FTMS 0 0 0 19886 261520.109375 0.8574807599105289 3 -0.08860015869140625 4 Unmodified _YPYLTSPEF_ REV__ENSG00000179981|ENST00000580243|TSHZ1;REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 36.04419817259434 0.08350412372117409 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 9 -1 + 80.569 0 0 7.2225 7.2225 89.179 0 0 0 11.917177698691575 48.837258228914706 11.917177698691575 8.762874945799766 0 2.8494850021680094 2 0.5752574989159953 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YT]{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EW{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{M(Oxidation (M))|F}HHPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]{[ET]|[MV]}PT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VD{I|L}DPT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[DV]DPT{M(Oxidation (M))|F};[VP]YY{[ET]|[MV]}PT{M(Oxidation (M))|F};[TP]YY{I|L}DPT{M(Oxidation (M))|F} 7.2225;6.437;5.6285;5.2514;5.2067;4.8196;4.1347;3.973;3.5159;3.2295 -;-;-;-;-;-;-;-;-;- 2134 NaN NaN 175251.1 NaN 16111 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19891 81.404 NaN 607530 35 0 135620 0.261 + 21597 PYNPLWAQL 9 73 551.2895982177552 1100.5646435023102 2 551.2901611328125 MULTI HCD FTMS 0 0 0 19886 267678.9375 0.36099292328406346 5 -0.14095306396484375 5 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 58.678817012210395 0.019429721296335044 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P]WAQ{I|L} 9 0 + 48.364 0 0 4.3944 4.3944 85.278 0 0 0 3.65279269351241 31.949237304209888 3.65279269351241 9.208187539523749 0 1.9247425010840047 0 0 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P]WAQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P]WA[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG[{I|L}P]WAQ{I|L};[Q{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}QQAQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P][PS][WK] 4.3944;3.5578;3.2622;1.643;0.46541 +;-;-;-;- + 336 NaN NaN 181195.8 NaN 16112 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19892 81.407 NaN 201050 35 0 15312 0.261 -1 ICSHVSTRALE 11 56 636.8217971533026 1271.629041373405 2 636.822265625 MULTI HCD FTMS 0 0 0 19886 97815.53125 1 0 0 6 Carbamidomethyl (C) _IC(Carbamidomethyl (C))SHVSTRALE_ ENSG00000164849|ENST00000444847|GPR146 13.042465956692817 0.3434429782671734 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 8 -1 43.715 0 0 3.4377 0 0 0 381.22541631926833 381.22541631926833 30.51415913489059 0 0 0 0 1.3252574989159953 1.6989700043360187 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 3.4377 - 33 + NaN NaN 126156.7 NaN 16113 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19893 81.41 NaN 169070 35 0 17105 0.263 + -1 LYKCVDIL 8 58 512.2814807207097 1022.5484085082195 2 512.282470703125 MULTI HCD FTMS 0 0 0 19886 60803.546875 0.4860572702741457 16 -0.46315765380859375 7 Carbamidomethyl (C) _LYKC(Carbamidomethyl (C))VDIL_ REV__ENSG00000104228|ENST00000305364|TRIM35;REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35 10.183394434864962 0.5188676124868831 1 W 1 -1 6.9897 0 0 0.68356 0 0 220.13167263495546 613.2988375299436 833.430510164899 0 0 0 0 0 0 0 0 0 W 0.68356 - 51 + NaN NaN 99631 NaN 16114 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19894 81.414 NaN 412970 35 0 48457 0.261 + 23146 RFILNLPTF 9 100 560.8295653499299 1119.6445777666597 2 560.8302612304688 MULTI HCD FTMS 0 0 0 19886 57124.69921875 0.008254333236195396 39 -1.1086654663085938 8 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 53.832793166522166 0.026208976789938845 1 {I|L}TP{M(Oxidation (M))|F} 4 6 41.274 0 0 3.6864 0 0 643.3810107274004 0 643.3810107274004 0 32.37919558664217 0 0 0 1.3494850021680094 0 0.4247425010840047 0 {I|L}TP{M(Oxidation (M))|F} 3.6864 - 2106 + NaN NaN 156690.3 NaN 16115 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19895 81.417 NaN 130820 35 0 11327 0.264 -1 0 62 403.73934617271607 805.4641394122322 2 403.739990234375 MULTI HCD FTMS 0 0 0 19886 20040.47265625 0.10918221676656953 3 -0.08860015869140625 9 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.4394 0 0 640.3814042821525 0 640.3814042821525 0 2.921656121837655 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4394 - 41 + NaN NaN 107955.4 NaN 16116 3777 19886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19897 81.422 NaN 2484700 35 0 529840 0.326 + 26625 SWPDWALPRL 10 81 620.8271632702259 1239.6397736072518 2 620.8273315429688 MULTI HCD FTMS 0 0 0 19896 1669667.125 1 0 0 1 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 114.18643581695662 4.601856720657053E-05 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 116.38 0 0 9.3885 9.3885 97.48 0 0 0 17.78151250383644 96.99839547105397 17.78151250383644 33.912939259328766 0 3.0669015600442577 1.6989700043360187 1.8882104921644451 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L};[DP]WSWA{I|L}PR{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}PD{[QG]|[NA]}[KG]PR{I|L};[PS]WDWA{I|L}PR{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{[QG]|[NA]}Q[TA]PR{I|L};[PS]WDWA{I|L}{I|L}[RP];{[WS]|[C(Carbamidomethyl (C)){I|L}]}PD[HT][KT]R{I|L};[PS]{[DA]|[EG]}WW{I|L}PR{I|L};[DP]W{[RE]|[WV]}[TA]PR{I|L};[PS]{[DA]|[EG]}WW{I|L}{I|L}[RP] 9.3885;6.6528;5.5026;4.9822;4.4573;4.3963;3.9294;2.1171;1.8729;1.5313 +;-;-;-;-;-;-;-;-;- + 1206 NaN NaN 465137.5 NaN 16117 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19898 81.427 NaN 432270 35 0 50287 0.263 + 1021 AYGASFLSF 9 45 481.7344463774927 961.4543398217854 2 481.73443603515625 MULTI HCD FTMS 0 0 0 19896 249363.828125 0.6050681581430885 3 -0.0819091796875 2 Unmodified _AYGASFLSF_ ENSG00000159596|ENST00000372025|TMEM69 112.59319219568356 0.00251905749371435 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9 0 + 100.08 0 0 10.409 10.409 89.961 0 0 0 19.990823894397565 90.6129718618623 19.990823894397565 1.706962271689747 0 2.805462187404089 1.5228787452803376 1.4731975075880328 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YQ]AS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 10.409;10.231;8.2515 +;-;- + 180 NaN NaN 165914.1 NaN 16118 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19899 81.43 NaN 154480 35 0 57271 0.261 + 21005 PLNVDLVL 8 49 441.76822041505295 881.5218878969059 2 441.7684631347656 MULTI HCD FTMS 0 0 0 19896 132292.09375 0.033886938999800394 10 -0.28217315673828125 3 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 21.74664581756881 0.4337896562907935 1 V{I|L} 2 -1 30.217 0 0 3.4278 0 0 651.3593429716149 0 651.3593429716149 0 7.513487579716767 0 0 0 0.9247425010840047 0 0 0 V{I|L} 3.4278 + + 43 NaN NaN 118445.2 NaN 16119 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19900 81.433 NaN 239670 35 0 7920.8 0.261 -1 LVMVVVQLE 9 79 523.3037906164145 NaN 0 523.3035888671875 PEAK HCD FTMS 0 0 0 19896 151011.875 0.26117347602776003 21 -0.5975265502929688 4 Oxidation (M) _LVM(Oxidation (M))VVVQLE_ ENST00000263934.10_1_1:10437581-10437845:+|nuORF 8.745405648335112 0.25286782695573473 1 VVQ 3 -1 8.9009 0 0 0.8521 0 0 458.26998250060393 257.1148775690063 715.3848600696102 0 0 0 0 0 0.2614393726401688 0 0 0 VVQ 0.8521 + + 164 + NaN NaN 139000.2 NaN 16120 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19901 81.437 NaN 137830 35 0 31438 0.261 + 34327 YPEDFAIDL 9 42 541.7556731775937 1081.4967934219874 2 541.7560424804688 MULTI HCD FTMS 0 0 0 19896 66003.65625 0.1597947024181455 10 -0.28217315673828125 5 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 30.636539890814138 0.10832830463492794 1 A{I|L}D{I|L} 4 5 46.938 0 0 4.3401 0 0 651.2559681623062 0 651.2559681623062 0 20.996075289514096 0 0 0 1.5 0 0 0 + A{I|L}D{I|L} 4.3401 + + 25 NaN NaN 102298.9 NaN 16121 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19902 81.44 NaN 195350 35 0 33043 0.261 + -1 HHCHCAPE 8 46 495.68749371207116 989.3604344909423 2 495.6878662109375 MULTI HCD FTMS 0 0 0 19896 124847.8125 1 0 0 6 Carbamidomethyl (C) _HHC(Carbamidomethyl (C))HCAPE_ REV__ENSG00000196155|ENST00000379344|PLEKHG4;REV__ENST00000563969.5_1_16:67314567-67322708:+|nuORF;REV__nc|ENSG00000196155|Q58EX7-2|PLEKHG4 0.7936320650641473 0.540814922690045 1 {I|L}[EP] 3 -1 3.3008 0 0 0.33363 0 0 632.1899891584 0 632.1899891584 0 2.3316559547312505 0 0 0 0 0 0 0 {I|L}[EP] 0.33363 - 2 NaN NaN 112968 NaN 16122 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19903 81.443 NaN 439130 35 0 36249 0.261 + 23186 RFLDFITNI 9 85 569.8162235727434 1137.6178942122867 2 569.81689453125 MULTI HCD FTMS 0 0 0 19896 147812.671875 1 0 0 7 Unmodified _RFLDFITNI_ ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C 47.7319792270244 0.034743597693959835 1 {M(Oxidation (M))|F}{I|L}TN{I|L} 5 4 53.092 0 0 4.6669 0 0 531.28129775215 0 531.28129775215 0 47.6072158606037 0 0 0 1.6549471895720984 0 0.8494850021680094 0 + {M(Oxidation (M))|F}{I|L}TN{I|L} 4.6669 + + 300 NaN NaN 154192.7 NaN 16123 3778 19896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19905 81.448 NaN 533820 35 0 66917 0.327 + 13451 KYPENFFLL 9 61 585.8132425088911 1169.6119320845821 2 585.8135986328125 MULTI HCD FTMS 0 0 0 19904 297884.78125 0.0015025047122750668 212 -5.201995849609375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 63.960520009940105 0.0120409805053046 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 75.811 0 0 6.4817 6.4817 88.803 0 0 0 7.732646631054152 52.62308915409547 7.732646631054152 9.208187539523749 0 2.079689690656103 0 0 1.3129529932484498 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.4817;5.6944;3.5099 +;-;- + 359 NaN NaN 163152 NaN 16124 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19906 81.453 NaN 754320 35 0 95375 0.261 -1 0 83 566.2978883914894 1130.5812238497788 2 566.2980346679688 MULTI HCD FTMS 0 0 0 19904 261870.75 0.5498971878995719 40 -1.13482666015625 2 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 52.74 0 0 4.6648 0 0 291.1577320783219 0 291.1577320783219 0 26.07963467823147 0 0 0 2.5752574989159953 0 0.5796896906561032 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.6648 - 1211 NaN NaN 199785.4 NaN 16125 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19907 81.456 NaN 230710 35 0 31601 0.263 -1 0 49 422.2996987529317 842.5848445726634 2 422.2998962402344 MULTI HCD FTMS 0 0 0 19904 135280.453125 0.8331338855387775 1 -0.02951812744140625 3 NaN NaN 1 W 1 -1 13.099 0 0 1.5546 0 0 638.4951361759822 0 638.4951361759822 0 7.614393726401687 0 0 0 0 0 0 0 W 1.5546 - 11 + NaN NaN 118748.4 NaN 16126 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19908 81.46 NaN 140940 35 0 32114 0.261 -1 0 44 492.7255397956059 983.4365266580119 2 492.72607421875 MULTI HCD FTMS 0 0 0 19904 62008.109375 0.32583833487514297 5 -0.1377105712890625 4 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G 3 -1 30.942 0 0 3.1463 0 0 0 689.2918787910775 689.2918787910775 9.176127934005436 0 0 0 0 0.5 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G 3.1463 - 16 NaN NaN 111184.9 NaN 16127 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19909 81.463 NaN 159450 35 0 12912 0.261 + 27667 TALNLFFKL 9 62 533.8181474268462 1065.6217419204922 2 533.81884765625 MULTI HCD FTMS 0 0 0 19904 71925.546875 0.30501957876581054 17 -0.499298095703125 5 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 23.789781309258295 0.1548179064208189 1 KK{[QG]|[NA]}{I|L}NT{M(Oxidation (M))|F} 8 7 40.685 0 0 3.818 0 0 131.0933732290086 0 131.0933732290086 0 19.209109599542114 0 0 0 0.3807196863200844 0 1.1307196863200843 0.4247425010840047 KK{[QG]|[NA]}{I|L}NT{M(Oxidation (M))|F} 3.818 - 248 + NaN NaN 124252.7 NaN 16128 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19910 81.466 NaN 247970 35 0 87059 0.261 + -1 YVVPPETVM 9 37 525.7632350844128 NaN 0 525.780517578125 PEAK HCD FTMS 0 0 0 19904 6083.50146484375 1 0 0 6 Oxidation (M) _YVVPPETVM(Oxidation (M))_ REV__ENSG00000197360|ENST00000357774|ZNF98 7.289230182591677 0.2599242500475609 1 VDP 3 -1 12.703 0 0 1.2104 0 0 165.04395637588192 570.2908419244749 735.3347983003569 0 0 0 0 0 0 0 0 0 VDP 1.2104 - 10 + NaN NaN 119412.9 NaN 16129 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19911 81.47 NaN 192020 35 0 20976 0.261 + 2037 DEEDFPNL 8 57 489.70563030970015 977.3967076862003 2 489.7060546875 MULTI HCD FTMS 0 0 0 19904 74505.9296875 0.5090280164101499 -3 0.08530426025390625 7 Unmodified _DEEDFPNL_ REV__ENSG00000131381|ENST00000253699|RBSN 2.577480529830294 0.5381683276125971 1 {I|L} 1 -1 9.732 0 0 0.9957 0 0 155.09360751196715 706.1950167291624 861.2886242411296 0 0 0 0 0 0.2742275032520141 0 0 0 {I|L} 0.9957 + + 27 + NaN NaN 109853.7 NaN 16130 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19912 81.473 NaN 111950 35 0 12340 0.261 -1 0 56 451.77968674285586 901.5448205525117 2 451.7801513671875 MULTI HCD FTMS 0 0 0 19904 34308.2578125 0.5292182490796736 -3 0.08530426025390625 8 NaN NaN 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DP 7 -1 42.184 0 0 4.6791 0 0 0 71.11386874518999 71.11386874518999 28.371600865782867 0 0 0 0 0 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DP 4.6791 - 54 NaN NaN 100426.9 NaN 16131 3779 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19914 81.478 NaN 487960 35 0 19668 0.327 -1 0 86 509.8036971120352 1017.5928412908704 2 509.8039855957031 MULTI HCD FTMS 0 0 0 19913 342224.6875 0.405499666452596 16 -0.46977996826171875 1 NaN NaN 1 A 1 -1 7.0116 0 0 0.68904 0 0 105.07877504180756 838.4657686822874 943.544543724095 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.68904 - 120 + NaN NaN 162462.4 NaN 16132 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19915 81.482 NaN 639580 35 0 91807 0.261 + 17613 LYYDAIWHF 9 74 614.2951260546212 1226.5756991760422 2 614.79638671875 MULTI HCD FTMS 0 0 0 19913 195462.3125 0.011470212745106439 45 -1.2630157470703125 2 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 81.61307344734483 0.005330412723537057 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 81.635 0 0 6.6555 6.6555 88.263 0 0 0 9.088709367037282 9.088709367037282 9.088709367037282 9.088709367037282 0 2.528659694992122 2 0.3494850021680094 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YY[PG]V{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YY[RP]{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}KH{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}YQH{M(Oxidation (M))|F};{I|L}Y[PG]YV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F} 6.6555;5.9145;5.105;5.0597;4.8548;4.6126;4.3453;4.2679;4.1228;3.8773 +;+;-;-;-;-;-;-;-;- + 1319 + NaN NaN 186632.8 NaN 16133 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19916 81.486 NaN 418190 35 0 87324 0.261 + 18062 MLYISIDTF 9 69 551.7768251716839 1101.5390974101676 2 552.7823486328125 MULTI HCD FTMS 0 0 0 19913 138019.4375 0.6929562818089762 1 -0.02619171142578125 3 Unmodified _MLYISIDTF_ REV__ENST00000296257.9_1_3:185347643-185347886:+|nuORF 8.593279151180031 0.2858735984551981 1 D{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.4937 0 0 821.4335198728614 0 821.4335198728614 0 1.9897000433601875 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 1.4937 - 194 + NaN NaN 151943.8 NaN 16134 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19917 81.489 NaN 540890 35 0 53713 0.261 + 18450 MPVPEILQL 9 77 528.2936932626842 1054.5728335921683 2 528.2943725585938 MULTI HCD FTMS 0 0 0 19913 149745.03125 0.6145286209017455 -3 0.08860015869140625 4 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 47.748688679222035 0.03472022231463587 1 [VP]{M(Oxidation (M))|F}[EP]{I|L}{I|L}Q{I|L} 9 2 + 46.889 0 0 4.4463 4.4463 82.351 0 0 0 2.649087242336776 34.62189282359297 2.649087242336776 3.979400086720375 0 1.579689690656103 0 0 0 [VP]{M(Oxidation (M))|F}[EP]{I|L}{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[EP]{I|L}{I|L}Q{I|L};[VP]{M(Oxidation (M))|F}[EP]{I|L}{I|L}[AG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[EP]{I|L}{I|L}[AG]{I|L} 4.4463;4.0689;3.5731;3.1958 -;+;-;- + 510 NaN NaN 168100.7 NaN 16135 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19918 81.492 NaN 105710 35 0 12833 0.261 + 26052 SPERRLLS 8 44 479.27757849525995 956.5406040573199 2 479.277587890625 MULTI HCD FTMS 0 0 0 19913 34926.5234375 0.3364043894403247 7 -0.2001800537109375 5 Unmodified _SPERRLLS_ REV__ENSG00000173334|ENST00000311922|TRIB1;REV__nc|ENSG00000173334|Q96RU8-2|TRIB1 5.230669730166228 0.5342319408533849 1 [DP]TH 4 -1 11.075 0 0 1.1578 0 0 0 503.3232633192918 503.3232633192918 1.0131738508398573 0 0 0 0 0 0 0.28872548999643577 0 [DP]TH 1.1578 - 19 NaN NaN 99486 NaN 16136 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19919 81.496 NaN 286190 35 0 20197 0.261 -1 MLLETGLER 9 67 539.2848669186968 NaN 0 539.2692260742188 PEAK HCD FTMS 0 0 0 19913 12919.4248046875 0.3819278693817635 -5 0.144317626953125 6 Oxidation (M) _M(Oxidation (M))LLETGLER_ ENSG00000107187|ENST00000371748|LHX3 12.531546534597751 0.23452071659215576 1 {I|L}E{I|L}D 4 -1 16.16 0 0 1.5011 0 0 261.1505237102721 342.14561842944073 603.2961421397129 0 0 0 0 0 0 0 0.3252574989159953 0 {I|L}E{I|L}D 1.5011 - 109 + NaN NaN 126914.5 NaN 16137 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19920 81.499 NaN 130600 35 0 29031 0.261 + 17096 LYLEFLQKF 9 52 600.8367501363738 1199.6589473395475 2 600.8378295898438 MULTI HCD FTMS 0 0 0 19913 27781.21484375 0.04743784993462746 16 -0.46977996826171875 7 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 6.723162845929126 0.3000504726104499 1 W 1 9 13.495 0 0 1.1249 0 0 995.5695593774366 0 995.5695593774366 0 8.89075625191822 0 0 0 0 0 0 0 W 1.1249 - 16 + NaN NaN 98488.8 NaN 16138 3780 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19922 81.504 NaN 800570 35 0 32074 0.327 + 30792 VPSLKQRSS 9 95 501.2905065387472 1000.5664601442944 2 501.2907409667969 MULTI HCD FTMS 0 0 0 19921 871020.1875 0.6198600863745404 21 -0.6040802001953125 1 Unmodified _VPSLKQRSS_ ENSG00000258366|ENST00000360203|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;ENST00000496281.1_1_20:62321467-62323226:+|nuORF;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1 6.723162845929126 0.3000504726104499 1 Q 1 8 11.722 0 0 1.1715 0 0 458.272666425438 411.2234739884171 869.4961404138551 0 0 0 0 0 0.7742275032520141 0 0 0 + Q 1.1715 + + 57 + NaN NaN 204090.4 NaN 16139 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19923 81.508 NaN 721950 35 0 86751 0.261 + 26131 SPMDIFDMF 9 89 567.7274992158079 1133.4404454984158 2 567.7279663085938 MULTI HCD FTMS 0 0 0 19921 246572.015625 0.856905320611948 1 -0.02616119384765625 2 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 54.773552608820026 0.024892918755467567 1 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS + + 53.87 13.188 2.9559 4.7528 4.7528 61.172 0 0 0 0 39.345822277650825 0 0 0 1.7059771852360797 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7528 - 978 + NaN NaN 196644 NaN 16140 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19924 81.512 NaN 370440 35 0 81355 0.261 + 20704 PFSPLAPEPVL 11 53 583.8262852023548 1165.6380174715096 2 583.8269653320312 MULTI HCD FTMS 0 0 0 19921 149995.890625 1 0 0 3 Unmodified _PFSPLAPEPVL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89 19.361941925380144 0.2883811769592959 1 {I|L}Y{M(Oxidation (M))|F}A 4 10 22.524 0 0 1.9323 0 0 130.11343358654705 538.2676148805465 668.3810484670935 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}Y{M(Oxidation (M))|F}A 1.9323 - 91 + NaN NaN 135204 NaN 16141 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19925 81.515 NaN 294970 35 0 22710 0.261 -1 FPMDFNVTL 9 73 550.2601322682287 1098.5057116032574 2 550.2601928710938 MULTI HCD FTMS 0 0 0 19921 60004.26953125 0.7816439999250978 -5 0.14101409912109375 4 Oxidation (M) _FPM(Oxidation (M))DFNVTL_ ENSG00000159128|ENST00000290219|IFNGR2 19.361941925380144 0.1930734562688509 1 NVT{I|L} 4 -1 49.825 0 0 4.5357 0 0 653.2508664549142 0 653.2508664549142 0 30.18421733876052 0 0 0 1.5 0 0 0.28872548999643577 NVT{I|L} 4.5357 + + 233 NaN NaN 136322.7 NaN 16142 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19926 81.519 NaN 226450 35 0 26596 0.261 + 10351 ILSTTRKPF 9 61 531.8172227618313 NaN 0 531.8174438476562 PEAK HCD FTMS 0 0 0 19921 92099.7890625 0.6194839954707275 -2 0.0557098388671875 5 Unmodified _ILSTTRKPF_ REV__ENSG00000164116|ENST00000506455|GUCY1A1;REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF;REV__nc|ENSG00000164116|Q02108-2|GUCY1A1 7.910154910731844 0.25691533546754686 1 {I|L} 1 -1 6.9897 0 0 0.6584 0 0 132.0244660358615 813.4882126258549 945.5126786617163 0 0 0 0 0 0 0 0 0 {I|L} 0.6584 + + 10 + NaN NaN 117588.9 NaN 16143 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19927 81.522 NaN 330140 35 0 62523 0.261 + 8111 GLIAELLSL 9 59 464.78901772997114 927.5634825267423 2 464.7889404296875 MULTI HCD FTMS 0 0 0 19921 46838.18359375 0.520486521738451 -2 0.0557098388671875 6 Unmodified _GLIAELLSL_ REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF 46.020951573049366 0.037705236580089195 1 [TP]T[{I|L}A]{I|L}{I|L}S{I|L} 9 -1 + 59.644 0 0 6.4302 6.4302 90.51 0 0 0 12.789230860337994 37.476884018817245 12.789230860337994 13.010299956639813 0 1.3494850021680094 1.5228787452803376 0.3807196863200844 0 [TP]T[{I|L}A]{I|L}{I|L}S{I|L};{[VA]|[{I|L}G]}E[{I|L}A]{I|L}{I|L}S{I|L} 6.4302;5.0275 -;- 106 NaN NaN 152739.7 NaN 16144 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19928 81.525 NaN 70240 35 0 4169.7 0.261 + -1 CSYFFWEPL 9 52 624.7753900233042 NaN 0 624.7769775390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))SYFFWEPL_ REV__tr|U7SSI1|U7SSI1_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01276PE=4SV=1 3.944395688203298 0.27613285122220627 1 P 1 -1 2.7642 0 0 0.22157 0 0 790.2532203768834 357.2098482721313 1147.4630686490148 0 0 0 0 0 0 0 0 0 P 0.22157 + + 5 + NaN NaN 103791.9 NaN 16145 3781 19921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19930 81.53 NaN 2132600 35 0 243870 0.327 + 17886 MILELDPTF 9 86 547.7754511214581 1093.5363493097161 2 547.77587890625 MULTI HCD FTMS 0 0 0 19929 1442933.125 0.5992637912853953 4 -0.11829376220703125 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 109.18 0 0 9.9845 9.9845 97.899 0 0 0 19.4371790915489 39.0851424828483 19.4371790915489 33.40620618687794 0 2.9916440611282624 2 1.3684151806525389 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};[TP]{M(Oxidation (M))|F}D{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};[VP][DV]YE{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E][PS]{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E][EP]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F}{I|L} 9.9845;6.9296;6.915;6.498;4.6441;4.5274;3.2234;3.1878;2.1317;0.45158 +;-;-;-;-;-;-;-;-;- + 1419 NaN NaN 405596.3 NaN 16146 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19931 81.535 NaN 826320 35 0 157460 0.261 + 30111 VFYPYPQYF 9 62 612.2922507393467 1222.5699485454934 2 612.2924194335938 MULTI HCD FTMS 0 0 0 19929 375876.0625 0.38949451927581163 -3 0.08187103271484375 2 Unmodified _VFYPYPQYF_ ENSG00000103160|ENST00000219439|HSDL1 89.42679046578446 0.004540987215715461 1 [{M(Oxidation (M))|F}V]YPYPQY{M(Oxidation (M))|F} 9 0 + 74.09 0 0 6.0602 6.0602 88.039 0 0 0 7.147642715192504 66.01850649356642 7.147642715192504 9.208187539523749 0 2.4247425010840047 0 0 0 + + [{M(Oxidation (M))|F}V]YPYPQY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPYP[AG]Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPYP[SG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPY[SG]P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y[SG]YPP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ][YV]YPP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}V]Y{M(Oxidation (M))|F};[YQ]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.0602;5.307;4.4056;4.3869;4.3869;4.0596;1.1304;0.94473 +;-;-;-;-;-;-;- + 336 NaN NaN 220438.3 NaN 16147 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19932 81.538 NaN 152190 35 0 20742 0.261 + 23785 RRNLMECTM 9 62 577.2666893885627 1152.5188258439252 2 577.2671508789062 MULTI HCD FTMS 0 0 0 19929 103033.9765625 0.15003004389297867 7 -0.20037078857421875 3 Unmodified _RRNLMECTM_ REV__ENSG00000151617|ENST00000651419|EDNRA;REV__nc|ENSG00000151617|P25101-4|EDNRA;REV__nc|ENSG00000151617|P25101-5|EDNRA 10.073929032068715 0.27331982688540024 1 ED 2 -1 20.701 0 0 1.7962 0 0 670.3677160800565 235.0646151178344 905.4323311978909 0 0 0 0 0 1 0 0.4247425010840047 0 ED 1.7962 - 20 + NaN NaN 115786.8 NaN 16148 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19933 81.542 NaN 363930 35 0 42947 0.261 + 7781 FYNSGLLDTF 10 75 588.7818860289352 1175.5492191246703 2 588.7821044921875 MULTI HCD FTMS 0 0 0 19929 151434.90625 0.5972481744241035 -3 0.08187103271484375 4 Unmodified _FYNSGLLDTF_ ENSG00000169764|ENST00000337130|UGP2;ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2 100.0907132914201 0.00022792192901588228 1 YY{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}DT{M(Oxidation (M))|F} 10 2 + 62.386 0 0 5.307 5.307 84.502 0 0 0 5.725599829726427 13.952424927286849 5.725599829726427 5.725599829726427 0 1.774227503252014 1.6989700043360187 0 1.2302046884880937 YY{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}DT{M(Oxidation (M))|F};[Y{I|L}]{[MS]|[{M(Oxidation (M))|F}A]}[DG]KDT{M(Oxidation (M))|F};YY{[QD]|[EN]|[WG]|[KD]|[RS]}PKDT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[SA]|[TG]}T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}]{[SA]|[TG]}T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[PS][KT]AY{M(Oxidation (M))|F} 5.307;4.8199;4.6989;2.983;2.7269;2.002;1.7459;1.5708 -;-;-;-;-;-;-;- 448 NaN NaN 131335.1 NaN 16149 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19934 81.545 NaN 227870 35 0 36229 0.261 + -1 MEHEPCTPF 9 52 574.231062648648 1146.447572364096 2 574.2315673828125 MULTI HCD FTMS 0 0 0 19929 90408.5703125 0.5684127505873579 5 -0.1478271484375 5 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 4.3292370932331545 0.3181982124262546 1 D[TP]{M(Oxidation (M))|F} 4 -1 15.445 0 0 1.3472 0 0 668.240737502571 0 668.240737502571 0 3.5340874929963917 0 0 0 0.9247425010840047 0 0 0 D[TP]{M(Oxidation (M))|F} 1.3472 - 65 + NaN NaN 129093.2 NaN 16150 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19935 81.548 NaN 170300 35 0 44576 0.261 + 17310 LYPQFMFHL 9 54 598.3019807680839 1194.5894086029678 2 598.3026123046875 MULTI HCD FTMS 0 0 0 19929 90813.4609375 0.03316391480602259 69 -1.9738388061523438 6 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 21.74664581756881 0.17247014374749275 1 [Y{I|L}]N 3 7 30.942 0 0 2.5902 0 0 0 801.3782324157208 801.3782324157208 8.406206186877938 0 0 0 0 0.5 2 0 0 [Y{I|L}]N 2.5902 - 45 NaN NaN 102412.4 NaN 16151 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19936 81.551 NaN 257800 35 0 12915 0.261 + 34552 YPKSILRDF 9 66 569.8162235727434 1137.6178942122867 2 570.8068237304688 MULTI HCD FTMS 0 0 0 19929 16291.2265625 0.49461944504665883 3 -0.0887603759765625 7 Unmodified _YPKSILRDF_ ENSG00000102996|ENST00000219271|MMP15 7.910154910731844 0.2910521888787154 1 {I|L}PS[RP]{I|L}{M(Oxidation (M))|F} 7 5 26.537 0 0 2.3327 0 0 309.13377663591797 0 309.13377663591797 0 3.236045300582866 0 0 0 0 0 0.3807196863200844 0 {I|L}PS[RP]{I|L}{M(Oxidation (M))|F} 2.3327 - 826 + NaN NaN 129203.6 NaN 16152 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19937 81.555 NaN 139590 35 0 44727 0.261 -1 0 50 605.2860763904572 604.2787999238572 1 606.2998657226562 MULTI HCD FTMS 0 0 0 19929 12563.638671875 1 0 0 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 121480.8 NaN 16153 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19938 81.558 NaN 59113 35 0 5677.7 0.264 + 2465 DRFFMWIFF 9 44 436.87938681614713 NaN 0 436.879638671875 PEAK HCD FTMS 0 0 0 19929 15247.23046875 0.6209309228862243 -4 0.10807037353515625 9 Unmodified _DRFFMWIFF_ ENSG00000174343|ENST00000310169|CHRNA9 4.897010918128616 0.2715166107592903 1 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.80181 0 0 166.32264282502155 555.3302706354124 721.6529134604339 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.80181 + + 3 + NaN NaN 84931.6 NaN 16154 3782 19929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19940 81.563 NaN 2187900 35 0 478060 0.327 + 26626 SWPDWALPRL 10 84 620.8271632702259 1239.6397736072518 2 620.827392578125 MULTI HCD FTMS 0 0 0 19939 1356574.75 0.8124821586817792 5 -0.14116668701171875 1 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 128.57297698046145 2.2510087319712773E-05 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 120.05 0 0 9.6839 9.6839 96.101 0 0 0 16.307196863200843 16.307196863200843 16.307196863200843 16.307196863200843 0 3.142159058960253 1.6989700043360187 2.1791746928241125 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L};SWPDWA{I|L}PR{I|L};SWPDWA{I|L}{I|L}[RP];[DP]WSWA{I|L}PR{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}PD{[QG]|[NA]}[KG]PR{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}PD[HT][KT]R{I|L};{NN|[MP]|[D{I|L}]|[EV]}[QP]{[MS]|[{M(Oxidation (M))|F}A]}A{I|L}PR{I|L};S{[DA]|[EG]}PWW{I|L}PR{I|L};S{[DA]|[EG]}PWW{I|L}{I|L}[RP];[RP][YE][Y{M(Oxidation (M))|F}]PR{I|L} 9.6839;8.3685;7.5398;6.8961;5.7981;4.2788;4.2167;3.7902;2.9615;1.7682 +;+;-;-;-;-;-;-;-;- + 892 NaN NaN 416447.5 NaN 16155 3783 19939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19941 81.568 NaN 356190 35 0 26875 0.261 + 21562 PYLYDFLDA 9 75 558.7665682002983 1115.5185834673964 2 558.766845703125 MULTI HCD FTMS 0 0 0 19939 162842.796875 0.5339343331724656 9 -0.259765625 2 Unmodified _PYLYDFLDA_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 24.67388899826682 0.14717941214954053 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 9 6 + 73.126 0 0 6.5554 6.5554 92.024 0 0 0 11.640705543519907 42.39577516576787 11.640705543519907 20.42796583575644 0 2.805462187404089 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]D[TP]{M(Oxidation (M))|F};[YE][{I|L}P]{I|L}D[YG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[DV]D[TP]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PS]{M(Oxidation (M))|F}[YT]E{I|L};[Y{M(Oxidation (M))|F}]{I|L}[WM]P{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}[DV]YE{I|L} 6.5554;4.7241;3.2366;2.5694;1.7574;0.98022;0.31026 -;-;-;-;-;-;- 582 NaN NaN 139704.2 NaN 16156 3783 19939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19942 81.571 NaN 267290 35 0 36795 0.261 + 23147 RFILNLPTF 9 71 560.8295653499299 1119.6445777666597 2 561.3324584960938 MULTI HCD FTMS 0 0 0 19939 70933.546875 0.01605086302734054 45 -1.27630615234375 3 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 34.40172386719151 0.0910440009062557 1 T{M(Oxidation (M))|F}[YT]{I|L}PT{M(Oxidation (M))|F} 8 4 41.636 0 0 3.7187 0 0 131.13845761684837 0 131.13845761684837 0 24.355866139277747 0 0 0 1.305462187404089 0 0.4247425010840047 0 T{M(Oxidation (M))|F}[YT]{I|L}PT{M(Oxidation (M))|F} 3.7187 - 405 + NaN NaN 123507.9 NaN 16157 3783 19939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19943 81.574 NaN 130860 35 0 11875 0.261 + -1 SDICQGNLIPR 11 42 636.8217971533026 1271.629041373405 2 636.8218994140625 MULTI HCD FTMS 0 0 0 19939 71916.5703125 0.7352264961756776 6 -0.1674346923828125 4 Carbamidomethyl (C) _SDIC(Carbamidomethyl (C))QGNLIPR_ REV__ENSG00000164080|ENST00000684192|RAD54L2;REV__ENST00000487093.5_1_3:51669772-51697433:+|nuORF;REV__RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant;REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant 10.799506525563784 0.36298595732910816 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 8 -1 27.72 0 0 2.1799 0 0 0 381.2249176072187 381.2249176072187 23.740984232451012 0 0 0 0 1.3807196863200843 0 0.4247425010840047 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 2.1799 - 15 + NaN NaN 98450.2 NaN 16158 3783 19939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19944 81.578 NaN 153610 35 0 12257 0.263 + -1 IMNATVIVF 9 51 512.2814807207097 1022.5484085082195 2 512.28125 MULTI HCD FTMS 0 0 0 19939 69286.5546875 0.5538695580923965 22 -0.6235275268554688 5 Oxidation (M) _IM(Oxidation (M))NATVIVF_ REV__ENSG00000075275|ENST00000674500|CELSR1;REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 10.073929032068715 0.27331982688540024 1 QN 2 -1 15.573 0 0 1.523 0 0 762.433885642775 0 762.433885642775 0 6.532125137753441 0 0 0 0 0 0 0 QN 1.523 - 78 NaN NaN 97075 NaN 16159 3783 19939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19945 81.581 NaN 173120 35 0 11727 0.261 + -1 MLAEEIRSL 9 62 539.2848669186968 NaN 0 539.267822265625 PEAK HCD FTMS 0 0 0 19939 21844.169921875 0.6457638325854803 -2 0.0590972900390625 6 Oxidation (M) _M(Oxidation (M))LAEEIRSL_ REV__ENSG00000148843|ENST00000369797|PDCD11 12.531546534597751 0.23452071659215576 1 {I|L} 1 -1 5.4846 0 0 0.50945 0 0 131.1227979317636 829.3164962302916 960.4392941620551 0 0 0 0 0 0 0 0 0 {I|L} 0.50945 + + 31 + NaN NaN 104662.5 NaN 16160 3783 19939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19947 81.586 NaN 510220 35 0 63874 0.327 + 13452 KYPENFFLL 9 74 585.8132425088911 1169.6119320845821 2 585.8137817382812 MULTI HCD FTMS 0 0 0 19946 284313.28125 0.0014340512564889932 217 -5.297996520996094 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 65.275 0 0 5.5809 5.5809 84.329 0 0 0 3.5343797870581852 45.00869542769378 3.5343797870581852 4.247425010840047 0 2.412437995416459 0 0 1.1307196863200843 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PNE{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][YT][QT]W{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QNE{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.5809;5.2177;4.7936;4.6348;4.3962;2.4438;2.0807;1.8905;1.4978;1.2591 +;-;-;-;-;-;-;-;-;- + 345 NaN NaN 173247.2 NaN 16161 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19948 81.59 NaN 571820 35 0 82747 0.261 -1 0 79 566.2978883914894 1130.5812238497788 2 566.298095703125 MULTI HCD FTMS 0 0 0 19946 220765.6875 0.4635814833881435 45 -1.2729644775390625 2 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 52.836 0 0 4.6733 0 0 291.1580982892594 0 291.1580982892594 0 30.808706922580242 0 0 0 2.610924374808178 0 0.3494850021680094 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.6733 - 493 NaN NaN 168737.3 NaN 16162 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19949 81.594 NaN 320300 35 0 15217 0.261 + 16613 LVTGAMIVLE 10 85 523.3037906164145 NaN 0 523.303466796875 PEAK HCD FTMS 0 0 0 19946 181099.34375 0.31320944206231266 27 -0.7643661499023438 3 Unmodified _LVTGAMIVLE_ REV__ENSG00000148123|ENST00000374874|PLPPR1 13.90604991867851 0.3282826376286837 1 EQV 3 -1 13.188 0 0 1.2625 0 0 131.13772654852875 554.2644818573269 685.4022084058556 0 0 0 0 0 0 0 0 0 EQV 1.2625 - 109 + NaN NaN 134369 NaN 16163 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19950 81.597 NaN 294990 35 0 37638 0.261 + 14042 KYVEQLLTLF 10 75 627.3601193512648 1252.7056857693294 2 627.3599853515625 MULTI HCD FTMS 0 0 0 19946 83115.21875 0.7559053529228701 1 -0.03292083740234375 4 Unmodified _KYVEQLLTLF_ CUL5-ATM|1|fusion;CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5 32.037481411007896 0.2145045983280644 1 {I|L}T{I|L}{M(Oxidation (M))|F} 4 6 45.918 0 0 3.6655 0 0 760.4106312482437 0 760.4106312482437 0 40.43305028184122 0 0 0 1.1747425010840047 0 0.8252574989159953 0 + {I|L}T{I|L}{M(Oxidation (M))|F} 3.6655 + + 146 NaN NaN 134750.7 NaN 16164 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19951 81.601 NaN 349530 35 0 32330 0.261 + 21672 PYYPSPGVLF 10 75 570.2924870312795 1138.570421129359 2 570.2925415039062 MULTI HCD FTMS 0 0 0 19946 77720.4609375 0.744397109605871 -3 0.082000732421875 5 Unmodified _PYYPSPGVLF_ ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;TMEM181-HP1BP3|1|fusion 64.23631603340823 0.02601519761747251 1 YPS[RP]{I|L}{M(Oxidation (M))|F} 7 4 47.523 0 0 4.1739 0 0 260.11485488105626 0 260.11485488105626 0 28.482135413933772 0 0 0 2.1989700043360187 0 0.3807196863200844 0 YPS[RP]{I|L}{M(Oxidation (M))|F} 4.1739 - 682 NaN NaN 137267.9 NaN 16165 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19952 81.604 NaN 90257 35 0 17803 0.262 + 1022 AYGASFLSF 9 37 481.7344463774927 961.4543398217854 2 481.7343444824219 MULTI HCD FTMS 0 0 0 19946 43141.91796875 0.1046815852980352 9 -0.26636505126953125 6 Unmodified _AYGASFLSF_ ENSG00000159596|ENST00000372025|TMEM69 43.85829265575387 0.04763305254408404 1 S{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 5 4 55.745 0 0 5.798 0 0 362.15894294854166 0 362.15894294854166 0 55.74539712336197 0 0 0 2.2302046884880937 0 0 0 + S{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 5.798 + + 39 + NaN NaN 95703.1 NaN 16166 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19953 81.607 NaN 122390 35 0 11580 0.261 + 22781 QYLDISVFKF 10 55 630.3371015643663 1258.6596501955325 2 630.8388061523438 MULTI HCD FTMS 0 0 0 19946 37514.44921875 0.8943911979611264 1 -0.03292083740234375 7 Unmodified _QYLDISVFKF_ ENSG00000174125|ENST00000308979|TLR1 7.101721422024254 0.4377131641736035 1 QD{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 5 6 14.437 0 0 1.147 0 0 611.3689898684323 0 611.3689898684323 0 6.365006360318686 0 0 0 0 0 0 0 QD{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.147 - 55 NaN NaN 106951.5 NaN 16167 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19954 81.611 NaN 102550 35 0 8547.4 0.263 + 15345 LPDDILSQI 9 35 507.2791113143761 1012.5436696955522 2 507.28009033203125 MULTI HCD FTMS 0 0 0 19946 36002.6796875 0.8822923342677954 -1 0.0229034423828125 8 Unmodified _LPDDILSQI_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 11.494710602746466 0.2610445893512368 1 {I|L}SQ{I|L} 4 5 38.488 0 0 3.8011 0 0 553.2746449201187 0 553.2746449201187 0 38.48767215588211 0 0 0 0.805462187404089 0 0 0 + {I|L}SQ{I|L} 3.8011 + + 12 NaN NaN 97320.5 NaN 16168 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19955 81.614 NaN 363180 35 0 22917 0.261 + 30100 VFVQGPAWQF 10 79 589.8024883788826 1177.590423824565 2 589.8035888671875 MULTI HCD FTMS 0 0 0 19946 43352.578125 0.5361982339016025 -2 0.05583953857421875 9 Unmodified _VFVQGPAWQF_ ENSG00000134371|ENST00000367435|CDC73 43.77239144664712 0.11267038882370725 1 [{M(Oxidation (M))|F}V]VQG[PA]WQ{M(Oxidation (M))|F} 10 0 + 43.664 0 0 3.7079 3.7079 81.107 0 0 0 2.781964799699992 12.52697515943353 2.781964799699992 3.3496219575940955 0 1.9049471895720984 0 0 0 + + [{M(Oxidation (M))|F}V]VQG[PA]WQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]VQ[QP]WQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]VQG[PA]W[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V[AG]G[PA]WQ{M(Oxidation (M))|F};YY{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}N[H{I|L}];[{M(Oxidation (M))|F}V]VQ[QP]W[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]V[AG][QP]WQ{M(Oxidation (M))|F};YY{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}GG[H{I|L}];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VVG[PA]WQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VV[QP]WQ{M(Oxidation (M))|F} 3.7079;3.4234;2.9296;2.9296;2.9131;2.6415;2.6415;2.1311;1.8861;1.6016 +;-;-;-;-;-;-;-;-;- + 1202 NaN NaN 135961.3 NaN 16169 3784 19946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19957 81.619 NaN 435420 35 0 19059 0.327 -1 0 94 509.8036971120352 1017.5928412908704 2 509.8039245605469 MULTI HCD FTMS 0 0 0 19956 443947.25 0.5260300275606132 21 -0.5972137451171875 1 NaN NaN 1 [RV]A 3 -1 4.9781 0 0 0.4892 0 0 0 688.3770235650999 688.3770235650999 0.24613421077092212 0 0 0 0 0.3807196863200844 0 0 0 [RV]A 0.4892 - 92 + NaN NaN 163510.2 NaN 16170 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19958 81.623 NaN 410880 35 0 166090 0.261 -1 IPVTIMDVF 9 41 525.7803716645773 1049.5461903959545 2 525.7808227539062 MULTI HCD FTMS 0 0 0 19956 282741.5 0.9342946421011109 2 -0.0590667724609375 2 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 26.88365393820708 0.12808753336095696 1 DV{M(Oxidation (M))|F} 3 -1 36.995 0 0 3.5248 0 0 670.3742711378286 0 670.3742711378286 0 33.01538440272459 0 0 0 1.3807196863200843 0 0 0 DV{M(Oxidation (M))|F} 3.5248 + + 28 NaN NaN 147162.6 NaN 16171 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19959 81.627 NaN 701830 35 0 153320 0.261 + 21598 PYNPLWAQL 9 64 551.2895982177552 1100.5646435023102 2 551.7765502929688 MULTI HCD FTMS 0 0 0 19956 30121.91796875 0.05849718671961002 14 -0.40069580078125 3 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 13.90604991867851 0.24021115267848145 1 EAS[HQ]AS{[QN]|[E{I|L}]|[KN]} 9 8 49.9 0 0 4.534 0 0 130.1213143499047 0 130.1213143499047 0 33.459471728614574 0 0 0 0.4247425010840047 0 2.1549471895720984 0 EAS[HQ]AS{[QN]|[E{I|L}]|[KN]} 4.534 - 572 + NaN NaN 184046.8 NaN 16172 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19960 81.63 NaN 130110 35 0 11972 0.261 + 2021 DDEEQVPF 8 49 489.70563030970015 977.3967076862003 2 489.7060852050781 MULTI HCD FTMS 0 0 0 19956 62901.4296875 0.42974552653038656 3 -0.0853424072265625 4 Unmodified _DDEEQVPF_ REV__ENSG00000138835|ENST00000695401|RGS3;REV__nc|ENSG00000138835|P49796-5|RGS3;REV__nc|ENSG00000138835|P49796-6|RGS3;REV__nc|ENSG00000138835|P49796|RGS3 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.3807 0 0 812.3181382055348 0 812.3181382055348 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3807 + + 15 + NaN NaN 106976 NaN 16173 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19961 81.634 NaN 245390 35 0 34707 0.261 + 23148 RFILNLPTF 9 73 560.8295653499299 1119.6445777666597 2 560.82958984375 MULTI HCD FTMS 0 0 0 19956 83806.5390625 0.012109772309611447 47 -1.325286865234375 5 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 41.8396318013385 0.056899836730939755 1 T{M(Oxidation (M))|F}[YT]{I|L}PT{M(Oxidation (M))|F} 8 4 49.418 0 0 4.4137 0 0 131.13748350053862 0 131.13748350053862 0 38.202752769658446 0 0 0 1.305462187404089 0 0.4247425010840047 0 T{M(Oxidation (M))|F}[YT]{I|L}PT{M(Oxidation (M))|F} 4.4137 - 381 + NaN NaN 119420.7 NaN 16174 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19962 81.637 NaN 258380 35 0 34916 0.261 + 7483 FVYMYVHTAD 10 50 623.282807881188 1244.5510628291759 2 623.7849731445312 MULTI HCD FTMS 0 0 0 19956 66468.4765625 0.9343868401593385 1 -0.02953338623046875 6 Unmodified _FVYMYVHTAD_ REV__ENSG00000141526|ENST00000582743|SLC16A3 10.823927491677226 0.4098686510432541 1 S[QP]Y{M(Oxidation (M))|F} 5 -1 23.684 0 0 1.903 0 0 604.258104392775 0 604.258104392775 0 3.9794000867203714 0 0 0 0.9247425010840047 0 0 0 S[QP]Y{M(Oxidation (M))|F} 1.903 - 114 NaN NaN 126099.5 NaN 16175 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19963 81.64 NaN 96809 35 0 10864 0.263 + 19499 NRCWHGCD 8 42 495.68749371207116 989.3604344909423 2 495.6878662109375 MULTI HCD FTMS 0 0 0 19956 58837.81640625 0.4712763101576169 7 -0.20394134521484375 7 Unmodified _NRCWHGCD_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|37|1|sense 0.6903765706972694 0.5409681170271811 1 {M(Oxidation (M))|F} 1 8 5.4846 0 0 0.55435 0 0 513.1332858404522 326.13544641666255 839.2687322571148 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.55435 - 4 + NaN NaN 93041.2 NaN 16176 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19964 81.644 NaN 462050 35 0 59564 0.261 + -1 MLIASVFLN 9 70 512.2814807207097 1022.5484085082195 2 512.2822875976562 MULTI HCD FTMS 0 0 0 19956 62114.359375 0.4965357699396511 24 -0.6857528686523438 8 Oxidation (M) _M(Oxidation (M))LIASVFLN_ REV__ENSG00000277481|ENST00000620267|PKD1L3 21.74664581756881 0.17247014374749275 1 SVQN 4 -1 39.993 0 0 3.9111 0 0 576.3348697366922 0 576.3348697366922 0 3.631834953935865 0 0 0 0 0 0.805462187404089 0 SVQN 3.9111 - 360 NaN NaN 153407.1 NaN 16177 3785 19956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19966 81.648 NaN 814050 35 0 33520 0.327 + 30793 VPSLKQRSS 9 91 501.2905065387472 1000.5664601442944 2 501.2906799316406 MULTI HCD FTMS 0 0 0 19965 785585 0.5590602754595091 26 -0.7314300537109375 1 Unmodified _VPSLKQRSS_ ENSG00000258366|ENST00000360203|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;ENST00000496281.1_1_20:62321467-62323226:+|nuORF;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1 6.723162845929126 0.3000504726104499 1 Q 1 8 12.474 0 0 1.2467 0 0 458.27265925921785 411.22323029046004 869.4958895496779 0 0 0 0 0 0.8494850021680094 0 0 0 + Q 1.2467 + + 74 + NaN NaN 211258.2 NaN 16178 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19967 81.653 NaN 425260 35 0 60921 0.261 + 18451 MPVPEILQL 9 66 528.2936932626842 1054.5728335921683 2 528.2940673828125 MULTI HCD FTMS 0 0 0 19965 184531.4375 0.7572862274847042 3 -0.0820770263671875 2 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 56.17704186161178 0.022929533404884107 1 {[QN]|[E{I|L}]|[KN]}T[EP]{I|L}{I|L}Q{I|L} 9 3 {[QN]|[E{I|L}]|[KN]} + + 49.996 3.7236 1.5379 4.7409 4.7409 61.152 0 0 0 0 37.23201917330034 0 0 0 2.6307196863200843 0 0 1.610924374808178 {[QN]|[E{I|L}]|[KN]}T[EP]{I|L}{I|L}Q{I|L} 4.7409 - 210 + NaN NaN 158593.4 NaN 16179 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19968 81.656 NaN 338700 35 0 28962 0.261 + 24681 RYLTAWVIY 9 75 592.825935536551 1183.637318139902 2 592.3214721679688 MULTI HCD FTMS 0 0 0 19965 177396.078125 1 0 0 3 Unmodified _RYLTAWVIY_ REV__ENSG00000112276|ENST00000314641|BVES 15.847184025352803 0.2234401846867398 1 QV{I|L}[DG]{I|L}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 -1 61.731 0 0 5.2153 0 0 166.08790257860682 0 166.08790257860682 0 34.041068762089 0 0 0 0 0 1.4049471895720984 1.579689690656103 QV{I|L}[DG]{I|L}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 5.2153 - 819 + NaN NaN 150471 NaN 16180 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19969 81.66 NaN 247910 35 0 20380 0.261 + 21440 PWFKIIAATF 10 72 597.3392679947458 1192.6639830562915 2 597.33984375 MULTI HCD FTMS 0 0 0 19965 89648.921875 0.8023811887903584 1 -0.02953338623046875 4 Unmodified _PWFKIIAATF_ ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 80.6760300276096 0.004935188130137892 1 PW{M(Oxidation (M))|F}K{I|L}{I|L}AAT{M(Oxidation (M))|F} 10 0 + 69.575 0 0 5.8335 5.8335 92.99 0 0 0 50.72759806953086 11.878713199345725 11.878713199345725 69.57457289475158 0 2.985985638199878 1.3979400086720375 1.2302046884880937 0 + + PW{M(Oxidation (M))|F}K{I|L}{I|L}AAT{M(Oxidation (M))|F} 5.8335 + + 421 + NaN NaN 128516.3 NaN 16181 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19970 81.663 NaN 343840 35 0 31946 0.261 + 15707 LPESIGALLHL 11 84 581.8449915643827 1161.6754301955652 2 581.8453979492188 MULTI HCD FTMS 0 0 0 19965 56927.6796875 0.6182010334765079 1 -0.02953338623046875 5 Unmodified _LPESIGALLHL_ ENSG00000137269|ENST00000370888|LRRC1 118.89474601620944 0.0176041632128881 1 {I|L}PES{I|L}GA{I|L}{I|L}H{I|L} 11 0 + 87.159 0 0 7.5029 7.5029 86.678 0 0 0 15.07062321345802 11.047575072713158 11.047575072713158 1.8045606445813007 0 2.9604093769761874 0 0.7614393726401688 0 + + {I|L}PES{I|L}GA{I|L}{I|L}H{I|L};{I|L}PES{I|L}Q{I|L}{I|L}H{I|L};{I|L}PES{I|L}GA{I|L}H{I|L}{I|L};{I|L}PES{I|L}Q{I|L}H{I|L}{I|L};[{I|L}P]ES{I|L}Q{I|L}{I|L}H{I|L};[EP]{I|L}S{I|L}Q{I|L}{I|L}H{I|L};[{I|L}P]E{I|L}{I|L}G{I|L}SAH{I|L};[{I|L}P]ES{I|L}Q{I|L}H{I|L}{I|L};[EP]S{I|L}{I|L}Q{I|L}{I|L}H{I|L};[EP]{I|L}{I|L}{I|L}G{I|L}SAH{I|L} 7.5029;7.3475;6.5519;6.3965;6.2423;5.9635;5.2871;5.2826;5.1905;5.0083 +;-;-;-;-;-;-;-;-;- + 776 + NaN NaN 147359.3 NaN 16182 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19971 81.666 NaN 157140 35 0 14358 0.261 + 7480 FVYFICENI 9 55 574.2790908271775 NaN 0 574.27880859375 PEAK HCD FTMS 0 0 0 19965 21569.544921875 0.35936041592014184 1 -0.02953338623046875 6 Unmodified _FVYFICENI_ tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1 8.745405648335112 0.25286782695573473 1 DYMVD{M(Oxidation (M))|F} 6 8 15.662 0 0 1.366 0 0 131.10525780967674 242.11438928775627 373.21964709743304 0 0 0 0 0 0 0 0 0 DYMVD{M(Oxidation (M))|F} 1.366 - 217 + NaN NaN 100444.9 NaN 16183 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19972 81.67 NaN 305450 35 0 22510 0.261 + 5490 FIYLEIVLF 9 81 578.8351769801167 NaN 0 578.8356323242188 PEAK HCD FTMS 0 0 0 19965 12685.4404296875 0.253521954990361 2 -0.05580902099609375 7 Unmodified _FIYLEIVLF_ ENST00000205636.3_1_3:32525040-32525106:-|nuORF 9.347437153973935 0.2499504662953367 1 {I|L}{M(Oxidation (M))|F} 2 7 10.969 0 0 0.94917 0 0 166.08254350686508 726.3994845025999 892.482028009465 0 0 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 0.94917 + + 16 + NaN NaN 121862.4 NaN 16184 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19973 81.673 NaN 201930 35 0 15751 0.261 + 17983 MLAIFVTRR 9 93 553.8300970105657 NaN 0 553.8307495117188 PEAK HCD FTMS 0 0 0 19965 86648.0859375 0.781669697225981 -1 0.02953338623046875 8 Unmodified _MLAIFVTRR_ REV__MFSD11|p.T177M|1|0.12|ENSG00000092931|chr17:76744355-76744355|C/T|missense_variant 5.230669730166228 0.26989974671959066 1 Y 1 -1 6.9897 0 0 0.63218 0 0 717.4712769295314 222.08847986392814 939.5597567934595 0 0 0 0 0 0 0 0 0 Y 0.63218 - 113 + NaN NaN 118091.2 NaN 16185 3786 19965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19975 81.678 NaN 1560200 35 0 323230 0.327 + 30112 VFYPYPQYF 9 83 612.2922507393467 1222.5699485454934 2 612.2924194335938 MULTI HCD FTMS 0 0 0 19974 886049.3125 0.9181519800209436 2 -0.05254364013671875 1 Unmodified _VFYPYPQYF_ ENSG00000103160|ENST00000219439|HSDL1 97.07464715276575 0.004340583992084827 1 [{M(Oxidation (M))|F}V]YPYPQY{M(Oxidation (M))|F} 9 0 + 79.346 0 0 6.4901 6.4901 88.831 0 0 0 7.147642715192504 69.45931800153943 7.147642715192504 9.208187539523749 0 2.774227503252014 0 0 0 + + [{M(Oxidation (M))|F}V]YPYPQY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPYP[AG]Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPYP[SG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPY[SG]P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y[SG]YPP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ][YV]YPP{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPS[YG]P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]PQY{M(Oxidation (M))|F};[QP]SPPY{[DS]|[MA]|[CV]|TT}SV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y[SG]Y{M(Oxidation (M))|F}N{[QV]|[N{I|L}]|[RA]|[KV]} 6.4901;5.7369;4.9377;4.4891;4.4891;3.8389;3.5877;3.2193;2.8348;2.6043 +;-;-;-;-;-;-;-;-;- + 1534 NaN NaN 316785.2 NaN 16186 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19976 81.682 NaN 992610 35 0 76662 0.261 + 5340 FFSPMLGEF 9 105 545.7494280691138 1089.4843032050276 2 545.7496337890625 MULTI HCD FTMS 0 0 0 19974 436245.5 0.7252393912123977 4 -0.121978759765625 2 Oxidation (M) _FFSPM(Oxidation (M))LGEF_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 103.74828524460852 0.00396301343438984 1 ESP{M(Oxidation (M))|F}{I|L}GE{M(Oxidation (M))|F} 8 2 62.131 0 0 5.7028 0 0 165.07912976731615 0 165.07912976731615 0 38.125020948362405 0 0 0 1.5 0 1.881810887670697 0 ESP{M(Oxidation (M))|F}{I|L}GE{M(Oxidation (M))|F} 5.7028 - 1215 + NaN NaN 229319.8 NaN 16187 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19977 81.686 NaN 652270 35 0 68578 0.261 + 17887 MILELDPTF 9 67 547.7754511214581 1093.5363493097161 2 547.775634765625 MULTI HCD FTMS 0 0 0 19974 401516.09375 0.16675343606289944 9 -0.26959991455078125 3 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 112.59319219568356 0.00251905749371435 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 90.244 0 0 8.2525 8.2525 97.443 0 0 0 25.642492736872597 57.28060846739574 25.642492736872597 90.24404079105771 0 2.2614393726401687 2 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 8.2525 + + 387 NaN NaN 205652.8 NaN 16188 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19978 81.689 NaN 93137 35 0 8447.7 0.261 + 31539 VYGKNLKLQ 9 48 531.8172227618313 NaN 0 531.8170776367188 PEAK HCD FTMS 0 0 0 19974 87882.2890625 0.591116137330197 4 -0.121978759765625 4 Unmodified _VYGKNLKLQ_ ENST00000264279.9_1_2:203139863-203142674:+|nuORF 4.3292370932331545 0.2742679634796037 1 P 1 9 5.4846 0 0 0.51662 0 0 164.17337267034378 797.3833712213499 961.5567438916937 0 0 0 0 0 0 0 0 0 P 0.51662 - 4 + NaN NaN 116499.5 NaN 16189 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19979 81.693 NaN 223840 35 0 26485 0.261 + -1 FPVCCCLLL 9 53 562.767209693373 1123.519866453546 2 562.7675170898438 MULTI HCD FTMS 0 0 0 19974 58425.76953125 0.8448773377043802 2 -0.05254364013671875 5 2 Carbamidomethyl (C) _FPVC(Carbamidomethyl (C))C(Carbamidomethyl (C))CLLL_ REV__ENST00000415822.6_2_3:158538073-158539436:+|nuORF;REV__ENST00000477743.1_3_3:158538073-158539826:+|nuORF 14.581692164780916 0.23437375358055648 1 A[Y{I|L}]YPE 6 -1 38.148 0 0 3.3954 0 0 369.15046889472814 0 369.15046889472814 0 31.04039720691517 0 0 0 1.274227503252014 0 0 0 A[Y{I|L}]YPE 3.3954 - 26 NaN NaN 115845.1 NaN 16190 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19980 81.696 NaN 310530 35 0 23542 0.261 + 32672 WPDWALPRL 9 87 577.3107851330863 1152.6070173329724 2 577.8128051757812 MULTI HCD FTMS 0 0 0 19974 36969.94921875 0.12171124106253862 -12 0.3444976806640625 6 Unmodified _WPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 36.12702656103203 0.08312389501731911 1 WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 6 3 51.031 0 0 4.4274 0 0 0 381.225418933662 381.225418933662 33.071968632008435 0 0 0 0 0.6861818737241735 1.3010299956639813 0 0.2742275032520141 + WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 4.4274 + + 79 + NaN NaN 149151 NaN 16191 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19981 81.699 NaN 52102 35 0 3857.2 0.263 -1 0 41 451.77968674285586 901.5448205525117 2 451.7799377441406 MULTI HCD FTMS 0 0 0 19974 21204.609375 0.3270893645251586 5 -0.14487457275390625 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 90371.8 NaN 16192 3787 19974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19983 81.704 NaN 2801100 35 0 572970 0.327 + 32133 VYSIISVQL 9 80 511.29980577191066 1020.5850586106213 2 511.30010986328125 MULTI HCD FTMS 0 0 0 19982 469378.34375 0.21310639546181387 -2 0.05580902099609375 1 Unmodified _VYSIISVQL_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant 176.83740622441886 1.0594397382223596E-10 1 [VS]Y{I|L}{I|L}SVQ{I|L} 9 2 + 102.45 0 0 10.038 10.038 88.965 0 0 0 0.17220322351953143 13.567372366348707 0.17220322351953143 0.17220322351953143 0 2.2614393726401687 1.6989700043360187 2.504432191740108 0 [VS]Y{I|L}{I|L}SVQ{I|L};[YV]S{I|L}{I|L}SVQ{I|L};[VS]Y{I|L}{I|L}SV[AG]{I|L};[YV]S{I|L}{I|L}SV[AG]{I|L};[VS]{I|L}{I|L}YSVQ{I|L};[VS]{I|L}{I|L}YSV[AG]{I|L};[VS]Y{I|L}[VS]{I|L}Q{I|L};[YV]S{I|L}[VS]{I|L}Q{I|L};[VS]Y{I|L}[VS]{I|L}[AG]{I|L};[YV]S{I|L}[VS]{I|L}[AG]{I|L} 10.038;10.022;9.1361;9.1193;7.3031;6.4009;6.1746;6.1577;5.2723;5.2554 -;+;-;-;-;-;-;-;-;- + 863 NaN NaN 506239.9 NaN 16193 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19984 81.709 NaN 809820 35 0 164140 0.261 + 26627 SWPDWALPRL 10 66 620.8271632702259 1239.6397736072518 2 620.8271484375 MULTI HCD FTMS 0 0 0 19982 199108.390625 0.11925035094944449 10 -0.295745849609375 2 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 87.25819977447905 0.0012128544035916314 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 101.68 0 0 8.2024 8.2024 97.372 0 0 0 17.78151250383644 90.71124409813045 17.78151250383644 101.68034422821101 0 2.805462187404089 1.6989700043360187 1.2302046884880937 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 8.2024 + + 313 NaN NaN 211860.6 NaN 16194 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19985 81.712 NaN 684950 35 0 109500 0.261 + 17195 LYMPKLLYF 9 64 594.330222176883 1186.645891420566 2 594.3304443359375 MULTI HCD FTMS 0 0 0 19982 190525.984375 0.21009510951781615 -2 0.05580902099609375 3 Unmodified _LYMPKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 54.773552608820026 0.024892918755467567 1 {I|L}YMP[K{I|L}]{I|L}Y{M(Oxidation (M))|F} 9 0 + 73.338 0 0 6.1803 6.1803 93.615 0 0 0 52.36880000633434 11.39506772603255 11.39506772603255 73.3379001364149 0 2.3494850021680094 1.6989700043360187 0 0 + + {I|L}YMP[K{I|L}]{I|L}Y{M(Oxidation (M))|F} 6.1803 + + 78 + NaN NaN 202516.5 NaN 16195 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19986 81.716 NaN 240150 35 0 46202 0.263 + 12265 KLPALFFL 8 35 474.7995409185883 947.5845289039767 2 474.7994384765625 MULTI HCD FTMS 0 0 0 19982 62351.70703125 0.3085833093354722 -2 0.05580902099609375 4 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 46.92087301778293 0.1468278106890452 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 47.044 0 0 4.9646 4.9646 90.899 0 0 0 2.7865969499212184 47.044190852930825 2.7865969499212184 47.044190852930825 0 2.242992819099939 0 0 0 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4.9646 + + 34 NaN NaN 117714.3 NaN 16196 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19987 81.719 NaN 340390 35 0 56033 0.261 + 32151 VYSNSIYELL 10 61 600.8106946797909 1199.6068364263817 2 600.811279296875 MULTI HCD FTMS 0 0 0 19982 90019.3671875 0.16672626716534877 -4 0.11826324462890625 5 Unmodified _VYSNSIYELL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 91.08480475639789 0.0009191514194420671 1 NS{I|L}YE{I|L}{I|L} 7 3 85.143 0 0 7.0975 0 0 349.16313368965 0 349.16313368965 0 59.19547293177743 0 0 0 2.6861818737241734 0 0.8494850021680094 1.1861818737241734 + NS{I|L}YE{I|L}{I|L} 7.0975 + + 305 NaN NaN 141121.4 NaN 16197 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19988 81.722 NaN 92362 35 0 19230 0.262 + 23509 RNAIFHLL 8 37 492.2921457787126 982.5697386242252 2 492.29241943359375 MULTI HCD FTMS 0 0 0 19982 35110.12109375 0.7099099362374152 1 -0.02626800537109375 6 Unmodified _RNAIFHLL_ ENSG00000151503|ENST00000534548|NCAPD3 14.581692164780916 0.48650662947107914 1 HN{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L} 6 5 32.664 0 0 3.3243 0 0 244.1788044660172 0 244.1788044660172 0 32.663800089887545 0 0 0 0 0 0 0.4247425010840047 HN{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L} 3.3243 - 27 NaN NaN 91465.5 NaN 16198 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19989 81.726 NaN 162390 35 0 14912 0.261 + 5332 FFPNDEVMN 9 76 556.7402352234458 1111.4659175136915 2 556.7408447265625 MULTI HCD FTMS 0 0 0 19982 29026.8984375 0.3248549452984143 5 -0.148101806640625 7 Unmodified _FFPNDEVMN_ ENSG00000117385|ENST00000296388|P3H1;ENST00000460031.5_1_1:43220834-43232642:-|nuORF;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;nc|ENSG00000117385|Q32P28-2|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;nc|ENSG00000117385|Q32P28-4|P3H1 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}S{[YC]|[HE]}T[TP]{M(Oxidation (M))|F} 9 7 + 36.071 0 0 3.2453 3.2453 86.059 0 0 0 29.08084672410888 0.39644672094171085 0.39644672094171085 13.627815773883338 0 1.3494850021680094 0 0.8807196863200843 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}S{[YC]|[HE]}T[TP]{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{M(Oxidation (M))|F}E;{[QD]|[EN]|[WG]|[KD]|[RS]}{[ET]|[MV]}YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2453;2.0192;1.5848;0.71167 -;-;-;- 88 + NaN NaN 106524.8 NaN 16199 3788 19982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19991 81.731 NaN 518970 35 0 72483 0.327 + 13453 KYPENFFLL 9 69 585.8132425088911 1169.6119320845821 2 585.8136596679688 MULTI HCD FTMS 0 0 0 19990 316216.15625 0.0015949665601224258 222 -5.358184814453125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 63.960520009940105 0.0120409805053046 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 64.205 0 0 5.4894 5.4894 87.061 0 0 0 1.7120467177745269 39.16772480037345 1.7120467177745269 9.208187539523749 0 2.1861818737241734 0 0 1.25 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[YT][KQ]DK;[YV]{[RE]|[WV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KE{I|L} 5.4894;4.7021;4.444;3.6568;3.4833;2.696;0.70215;0.29376 +;-;-;-;-;-;-;- + 564 NaN NaN 165709 NaN 16200 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19992 81.735 NaN 514140 35 0 80247 0.261 -1 0 74 566.2978883914894 1130.5812238497788 2 566.2982177734375 MULTI HCD FTMS 0 0 0 19990 232181.578125 0.4875534854237148 50 -1.4305267333984375 2 NaN NaN 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 58.817 0 0 5.2024 0 0 291.1581752220275 0 291.1581752220275 0 40.8581132860661 0 0 0 2.6861818737241734 0 0.3494850021680094 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2024 - 486 NaN NaN 158829.3 NaN 16201 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19993 81.742 NaN 418040 35 0 28937 0.261 + 31476 VYELARRH 8 99 522.2908771433813 1042.5672013535625 2 523.3035888671875 MULTI HCD FTMS 0 0 0 19990 22531.92578125 0.751302741111224 -1 0.02626800537109375 3 Unmodified _VYELARRH_ ENST00000467008.5_1_6:16740003-16761651:-|nuORF;ENST00000492857.1_1_6:16740003-16761659:-|nuORF 13.50788311687929 0.4944073034352369 1 [YV]{I|L}Y 4 5 30.662 0 0 2.941 0 0 0 501.2437838190063 501.2437838190063 16.682437647924218 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]{I|L}Y 2.941 - 637 + NaN NaN 146477.3 NaN 16202 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19994 81.746 NaN 243500 35 0 24272 0.261 + 7782 FYNSGLLDTF 10 68 588.7818860289352 1175.5492191246703 2 588.78271484375 MULTI HCD FTMS 0 0 0 19990 90295.859375 0.35612025328390445 4 -0.12183380126953125 4 Unmodified _FYNSGLLDTF_ ENSG00000169764|ENST00000337130|UGP2;ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2 70.33199760932243 0.017191949488996158 1 YY{I|L}G{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F} 10 4 + 65.628 0 0 5.5827 5.5827 90.383 0 0 0 19.911356165197844 49.42979712652914 19.911356165197844 20.969100130080562 0 1.5 1.5228787452803376 0 0.805462187404089 YY{I|L}G{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F};[YV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F};[PS][DV]PW{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[SA]|[TG]}T{M(Oxidation (M))|F};YY{I|L}G[PS][QT]T{M(Oxidation (M))|F};[PS][DV]{I|L}[WP]DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}NY{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GGY{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}AA{[SA]|[TG]}{I|L}AY{M(Oxidation (M))|F} 5.5827;3.799;3.4567;2.2484;1.8572;1.7758;1.7704;1.2674;0.98711;0.88454 -;-;-;-;-;-;-;-;-;- 363 NaN NaN 117596.9 NaN 16203 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19995 81.749 NaN 406350 35 0 22090 0.261 + 33801 YLGYSNSLSH 10 94 570.7717129508651 1139.52887296853 2 571.2741088867188 MULTI HCD FTMS 0 0 0 19990 86373.0859375 1 0 0 5 Unmodified _YLGYSNSLSH_ REV__ENST00000525151.5_1_6:111806061-111824561:+|nuORF 29.081581746732265 0.240155558137004 1 Y{I|L}AMAE[SG]{I|L}W 10 -1 + 68.969 0 0 6.0524 6.0524 85.84 0 0 0 12.549610462707633 5.976277995878547 5.976277995878547 5.976277995878547 0 1.1747425010840047 1 0.28872548999643577 0 Y{I|L}AMAE[SG]{I|L}W;Y{I|L}AMAEQ[PA]{M(Oxidation (M))|F};Y{I|L}AMAEA[VS]W;Y{I|L}AMAEAG[PA]{M(Oxidation (M))|F};Y{I|L}AMAEA[QP]{M(Oxidation (M))|F};MA{I|L}YAE[SG]{I|L}W;YPA{M(Oxidation (M))|F}AE[SG]{I|L}W;MA{I|L}YAEQ[PA]{M(Oxidation (M))|F};Y{I|L}AMAEA[PA]G{M(Oxidation (M))|F};YPAQEAY{I|L}W 6.0524;5.5279;5.524;5.3086;5.2638;4.9511;4.8469;4.68;4.5952;4.5569 -;-;-;-;-;-;-;-;-;- 8591 + NaN NaN 146172.6 NaN 16204 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19996 81.752 NaN 296390 35 0 32663 0.261 + 6204 FPENYVPTVF 10 59 606.8006499227157 1211.5867469122313 2 606.8006591796875 MULTI HCD FTMS 0 0 0 19990 76913.578125 0.4995987453370067 -7 0.20037078857421875 6 Unmodified _FPENYVPTVF_ ENSG00000115963|ENST00000263895|RND3 12.240655878213236 0.39661705172222156 1 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 7 25.918 0 0 2.1391 0 0 0 555.3259371393186 555.3259371393186 2.656688910426066 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1391 - 114 + NaN NaN 132041.2 NaN 16205 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19997 81.755 NaN 143160 35 0 6204.1 0.261 + 35373 YYDEIAVPF 9 59 558.7665682002983 1115.5185834673964 2 558.7669677734375 MULTI HCD FTMS 0 0 0 19990 81977.8671875 0.26879173467683515 15 -0.42659759521484375 7 Unmodified _YYDEIAVPF_ ENSG00000095564|ENST00000265990|BTAF1 21.74664581756881 0.17247014374749275 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 9 5 + 51.695 0 0 4.6342 4.6342 88.94 0 0 0 9.434728555880895 33.67960785114418 9.434728555880895 22.375729675490543 0 2.412437995416459 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F};[YV]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ETP{M(Oxidation (M))|F};[YV]TE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F};[YE][{I|L}P]{I|L}D[YG]{M(Oxidation (M))|F};[YV]TC[C(Carbamidomethyl (C))K]VM{I|L};[Y{M(Oxidation (M))|F}]{I|L}[WM]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 4.6342;2.6283;2.4259;1.702;1.1727;0.16891 -;-;-;-;-;- 354 NaN NaN 106016 NaN 16206 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 19998 81.759 NaN 169770 35 0 28218 0.261 + -1 MEHEPCTPF 9 58 574.231062648648 1146.447572364096 2 574.2310791015625 MULTI HCD FTMS 0 0 0 19990 26775.6484375 0.16834266844959922 12 -0.3480987548828125 8 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 4.3292370932331545 0.3181982124262546 1 {I|L}D{I|L}[C(Carbamidomethyl (C))S]N{I|L}{M(Oxidation (M))|F} 8 -1 31.636 0 0 2.7595 0 0 165.9756306504367 0 165.9756306504367 0 19.953584662885717 0 0 0 0 0 0.3494850021680094 0.3807196863200844 {I|L}D{I|L}[C(Carbamidomethyl (C))S]N{I|L}{M(Oxidation (M))|F} 2.7595 - 251 + NaN NaN 113475.7 NaN 16207 3789 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20000 81.764 NaN 640460 35 0 94832 0.327 + 3479 EGLVSAQVQL 10 89 522.2908771433813 1042.5672013535625 2 522.291259765625 MULTI HCD FTMS 0 0 0 19999 270199.4375 0.9811478377857313 1 -0.0362701416015625 1 Unmodified _EGLVSAQVQL_ ENSG00000085741|ENST00000322563|WNT11 43.981846655682396 0.11085276043338313 1 VYS{I|L}{I|L}SV 7 8 84.483 0 0 8.1034 0 0 0 278.1118563287719 278.1118563287719 56.43966622212051 0 0 0 0 2.1571406706489746 1.6989700043360187 0.6861818737241735 0 VYS{I|L}{I|L}SV 8.1034 - 798 + NaN NaN 183977 NaN 16208 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20001 81.768 NaN 392750 35 0 40302 0.261 + 32673 WPDWALPRL 9 75 577.3107851330863 1152.6070173329724 2 577.3118896484375 MULTI HCD FTMS 0 0 0 19999 224559.9375 0.4289250898792162 -6 0.17769622802734375 2 Unmodified _WPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 62.57269311338072 0.013982455292112035 1 WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}[RP] 9 2 + 70.71 0 0 6.1348 6.1348 83.777 0 0 0 23.95242492728684 1.0921451867560137 1.0921451867560137 1.0921451867560137 0 1.6307196863200843 1.154901959985743 0 0.6989700043360187 WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}[RP];WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}P[R{I|L}];WPD[W{I|L}]A{I|L}[RP];WPD[W{I|L}]AP[R{I|L}];WP[QA]{[QS]|[NT]}A{I|L}[RP];WP[QA]{[QS]|[NT]}AP[R{I|L}];WPD[VP][RD][R{I|L}];{[DA]|[EG]}PWW{I|L}{I|L}[RP];{[DA]|[EG]}PWW{I|L}P[R{I|L}] 6.1348;6.04;5.5433;5.4485;3.745;3.6503;3.4112;3.1817;3.087 -;+;-;-;-;-;-;-;- + 178 + NaN NaN 135409.7 NaN 16209 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20002 81.772 NaN 357190 35 0 19134 0.261 + 5853 FPDFFTRVAL 10 69 606.8237757049264 1211.6329984766528 2 607.3259887695312 MULTI HCD FTMS 0 0 0 19999 118484.859375 1 0 0 3 Unmodified _FPDFFTRVAL_ ENSG00000196415|ENST00000234347|PRTN3 42.835182525472874 0.12080338083969692 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}A{M(Oxidation (M))|F}{I|L} 10 4 + 53.166 0 0 4.3879 4.3879 83.216 0 0 0 6.2137167789556855 6.2137167789556855 6.2137167789556855 6.2137167789556855 0 1.7302046884880937 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}A{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{M(Oxidation (M))|F}TRVA{I|L};[DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}A{M(Oxidation (M))|F}{I|L} 4.3879;3.8751;2.1383 -;+;- + 315 NaN NaN 137330.1 NaN 16210 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20003 81.775 NaN 223600 35 0 35943 0.262 + 26343 SSFFDDPVL 9 56 513.7423125559842 1025.4700721787683 2 513.742431640625 MULTI HCD FTMS 0 0 0 19999 97465.2265625 0.9465791679043736 -3 0.0857086181640625 4 Unmodified _SSFFDDPVL_ ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1 30.636539890814138 0.10832830463492794 1 VDD{M(Oxidation (M))|F}[CS]{I|L} 7 7 45.463 0 0 4.4334 0 0 228.14700514961095 0 228.14700514961095 0 25.797669878531476 0 0 0 1.3494850021680094 0 0.3252574989159953 0 VDD{M(Oxidation (M))|F}[CS]{I|L} 4.4334 - 68 NaN NaN 114892.3 NaN 16211 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20004 81.778 NaN 217840 35 0 26193 0.261 -1 GYCGFMAANLY 11 53 641.765034320763 1281.515515708326 2 641.7652587890625 MULTI HCD FTMS 0 0 0 19999 139350.5625 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _GYC(Carbamidomethyl (C))GFM(Oxidation (M))AANLY_ ENSG00000129083|ENST00000439561|COPB1 9.38312468134398 0.3753269387758208 1 C{M(Oxidation (M))|F}NY{I|L} 5 -1 61.013 0 0 4.761 0 0 623.2330799787125 0 623.2330799787125 0 30.951753372113018 0 0 0 1.5 0 0 0.805462187404089 C{M(Oxidation (M))|F}NY{I|L} 4.761 - 48 NaN NaN 133751 NaN 16212 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20005 81.782 NaN 124070 35 0 16853 0.261 -1 MKFMYFQRK 9 44 647.8267157217759 1293.6388785103518 2 647.82666015625 MULTI HCD FTMS 0 0 0 19999 35805.23828125 0.5918420292934699 1 -0.0362701416015625 6 Oxidation (M) _MKFM(Oxidation (M))YFQRK_ ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107182.3 NaN 16213 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20006 81.785 NaN 126000 35 0 12379 0.261 -1 CVYTFGLNIF 10 55 617.3023305749831 1232.590108216766 2 617.7877197265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))VYTFGLNIF_ ENSG00000005700|ENST00000306270|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK 8.155526934196011 0.43213520406898465 1 DM{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 -1 36.089 0 0 2.9279 0 0 561.3176136701187 0 561.3176136701187 0 25.87709351031119 0 0 0 1.1307196863200843 0 0 0 DM{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.9279 - 154 NaN NaN 97485.1 NaN 16214 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20007 81.788 NaN 115020 35 0 12951 0.264 + 5362 FGFVNCHL 8 47 468.72309844918345 935.4316439651669 2 468.72369384765625 MULTI HCD FTMS 0 0 0 19999 61583.1796875 0.7762515857098712 -3 0.0857086181640625 8 Unmodified _FGFVNCHL_ ENSG00000165458|ENST00000298229|INPPL1;ENST00000537755.1_1_11:71942188-71943381:+|nuORF;ENST00000544806.1_1_11:71942502-71943381:+|nuORF;nc|ENSG00000165458|O15357-2|INPPL1 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105111.6 NaN 16215 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20008 81.792 NaN 65183 35 0 4721.4 0.261 + -1 FLSFMGTLLMP 11 38 636.8217971533026 1271.629041373405 2 636.8209838867188 MULTI HCD FTMS 0 0 0 19999 22165.8515625 0.22660871212617373 13 -0.36724090576171875 9 Oxidation (M) _FLSFMGTLLM(Oxidation (M))P_ REV__ENSG00000234469|ENST00000445307|CLDN34 1.3295316138638542 0.4130897924953357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90732.2 NaN 16216 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20009 81.795 NaN 122110 35 0 8724.3 0.263 + 14779 LIETSISVL 9 56 487.79099812095427 973.5674433087086 2 487.7908630371094 MULTI HCD FTMS 0 0 0 19999 36019.046875 0.3859985100700877 -3 0.0857086181640625 10 Unmodified _LIETSISVL_ ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 1.844237919475145 0.33703635659052655 1 W 1 9 6.9897 0 0 0.71795 0 0 132.11294867690043 652.3319766558166 784.444925332717 0 0 0 0 0 0 0 0 0 W 0.71795 - 10 + NaN NaN 111064.1 NaN 16217 3790 19999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20011 81.8 NaN 715970 35 0 28283 0.327 + 3590 EKIQKNKN 8 89 501.2905065387472 1000.5664601442944 2 501.29071044921875 MULTI HCD FTMS 0 0 0 20010 768786.375 0.547105561558606 31 -0.8623123168945312 1 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 7.910154910731844 0.5302565402355366 1 Q 1 7 12.034 0 0 1.2027 0 0 458.2730648664572 411.2228182428344 869.4958831092916 0 0 0 0 0 0.805462187404089 0 0 0 + Q 1.2027 + + 54 + NaN NaN 188118.3 NaN 16218 3791 20010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20012 81.804 NaN 498380 35 0 101490 0.261 -1 VPGARLCSLE 10 62 551.2895982177552 1100.5646435023102 2 551.7766723632812 MULTI HCD FTMS 0 0 0 20010 18015.458984375 0.03498627375394161 20 -0.5503997802734375 2 Carbamidomethyl (C) _VPGARLC(Carbamidomethyl (C))SLE_ ENST00000355451.7_1_7:44424487-44424640:-|nuORF 10.823927491677226 0.4098686510432541 1 E{M(Oxidation (M))|F}Y{I|L}AS{[QN]|[E{I|L}]|[KN]} 8 -1 49.391 0 0 4.4877 0 0 130.12109311064359 0 130.12109311064359 0 31.696377523504538 0 0 0 0 0 2.079689690656103 0 E{M(Oxidation (M))|F}Y{I|L}AS{[QN]|[E{I|L}]|[KN]} 4.4877 - 783 + NaN NaN 157457.5 NaN 16219 3791 20010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20013 81.808 NaN 1013800 35 0 67203 0.261 -1 0 105 545.3166518472603 544.3093753806603 1 545.31689453125 MULTI HCD FTMS 0 0 0 20010 222449.015625 1 0 0 3 NaN NaN 1 EN{M(Oxidation (M))|F} 3 -1 33.333 0 0 6.1238 0 0 136.14525014456524 0 136.14525014456524 0 10.14497986744422 0 0 0 0 0 0.4247425010840047 0.28872548999643577 EN{M(Oxidation (M))|F} 6.1238 - 103 + NaN NaN 242770.8 NaN 16220 3791 20010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20014 81.811 NaN 262490 35 0 30653 0.261 -1 MPVPEILQL 9 50 528.2936932626842 1054.5728335921683 2 528.2938842773438 MULTI HCD FTMS 0 0 0 20010 82551.2109375 0.33877639470051507 8 -0.2196502685546875 4 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 39.94969957227396 0.06557568441294001 1 {I|L}{I|L}Q{I|L} 4 -1 43.8 0 0 4.1533 0 0 569.2493763654312 0 569.2493763654312 0 33.34244409179611 0 0 0 1.1861818737241734 0 0 0 {I|L}{I|L}Q{I|L} 4.1533 + + 90 NaN NaN 117146.1 NaN 16221 3791 20010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20015 81.815 NaN 129390 35 0 6464.6 0.261 + 11811 KELNLGQR 8 58 479.2773015711186 956.5400502090372 2 479.27752685546875 MULTI HCD FTMS 0 0 0 20010 105772.9296875 0.7518392634460981 -2 0.06943511962890625 5 Unmodified _KELNLGQR_ REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF 4.3292370932331545 0.5355693454741696 1 V 1 -1 7.7423 0 0 0.8094 0 0 630.3455139314966 224.09652124576408 854.4420351772607 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.8094 - 26 + NaN NaN 101474.5 NaN 16222 3791 20010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20016 81.818 NaN 90750 35 0 5725.9 0.261 -1 MICCLSKMM 9 43 603.2480091502038 NaN 0 603.2579956054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))IC(Carbamidomethyl (C))C(Carbamidomethyl (C))LSKM(Oxidation (M))M_ ENST00000373299.4_1_9:130428541-130430393:+|nuORF 1.844237919475145 0.28630992268396543 1 Y 1 -1 5.4846 0 0 0.45535 0 0 165.9366178103699 872.4707125299436 1038.4073303403136 0 0 0 0 0 0 0 0 0 Y 0.45535 - 17 + NaN NaN 105068.5 NaN 16223 3791 20010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20018 81.823 NaN 466540 35 0 55228 0.327 + 17888 MILELDPTF 9 47 547.7754511214581 1093.5363493097161 2 547.7756958007812 MULTI HCD FTMS 0 0 0 20017 260281.40625 0.10809733286181865 14 -0.39327239990234375 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 104.79918948944588 0.003791450360204016 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[TP]{M(Oxidation (M))|F} 9 0 + 78.394 0 0 7.1689 7.1689 91.363 0 0 0 16.76477176880759 42.93227730987077 16.76477176880759 11.020599913279625 0 2.305462187404089 2 0.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[TP]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EVE[TP]{M(Oxidation (M))|F} 7.1689;6.1611 +;- + 211 NaN NaN 168746.3 NaN 16224 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20019 81.827 NaN 593540 35 0 89860 0.261 + 31495 VYFPSEQVPSA 11 66 612.3037473534683 NaN 0 612.2921752929688 PEAK HCD FTMS 0 0 0 20017 22769.78125 1 0 0 2 Unmodified _VYFPSEQVPSA_ REV__ENSG00000180902|ENST00000321264|D2HGDH;REV__ENST00000436747.5_1_2:242689322-242694075:+|nuORF 10.073929032068715 0.31354330794393104 1 NY[SG]YPY 7 -1 17.695 0 0 1.4474 0 0 132.1115658111326 243.11406885318596 375.2256346643186 0 0 0 0 0 0 0 0.3494850021680094 0 NY[SG]YPY 1.4474 - 215 + NaN NaN 182277.9 NaN 16225 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20020 81.831 NaN 187790 35 0 28555 0.261 + 23149 RFILNLPTF 9 60 560.8295653499299 1119.6445777666597 2 560.8292846679688 MULTI HCD FTMS 0 0 0 20017 35193.80078125 0.005085389743310198 54 -1.5349349975585938 3 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 22.736283301280096 0.1639198954644489 1 {I|L}PT{M(Oxidation (M))|F} 4 5 28.672 0 0 2.5608 0 0 643.3820483250566 0 643.3820483250566 0 23.187587626244124 0 0 0 1.274227503252014 0 0.4247425010840047 0 + {I|L}PT{M(Oxidation (M))|F} 2.5608 + + 54 + NaN NaN 106910.9 NaN 16226 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20021 81.834 NaN 261300 35 0 32184 0.261 + 11338 IYNETITDLL 10 73 597.8159560977527 1193.6173592623054 2 597.8165283203125 MULTI HCD FTMS 0 0 0 20017 49256.71484375 0.621543125358036 2 -0.0689849853515625 4 Unmodified _IYNETITDLL_ ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE 53.40400417844725 0.06540992187319636 1 [Y{I|L}]NET{I|L}TD{I|L}{I|L} 10 0 + 50.979 0 0 4.271 4.271 87.003 0 0 0 14.775844697417853 16.532125137753432 14.775844697417853 13.411964496339294 0 0.8979400086720375 1.6989700043360187 0.3807196863200844 0.4247425010840047 + + [Y{I|L}]NET{I|L}TD{I|L}{I|L};[Y{I|L}]GGET{I|L}TD{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V[WP]TD{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]ET{I|L}TD{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}VV[PS]{[QG]|[NA]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.271;3.1473;3.033;1.9761;1.0502 +;-;-;-;- + 296 NaN NaN 131920.9 NaN 16227 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20022 81.837 NaN 169700 35 0 10222 0.261 + 35595 YYIFIPSKF 9 67 589.3180975350526 1176.6216421369052 2 589.318115234375 MULTI HCD FTMS 0 0 0 20017 36927.06640625 0.5523049589451827 27 -0.76025390625 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19398022840297344 1 YY{I|L} 3 6 34.437 0 0 2.9268 0 0 0 734.3901797774739 734.3901797774739 15.585456211725202 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 + YY{I|L} 2.9268 + + 278 + NaN NaN 116824.1 NaN 16228 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20023 81.841 NaN 126680 35 0 24232 0.261 -1 0 55 525.7803716645773 1049.5461903959545 2 525.7805786132812 MULTI HCD FTMS 0 0 0 20017 32797.91015625 0.10837783534110834 9 -0.255767822265625 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.0952 0 0 884.4671936691951 0 884.4671936691951 0 5.536049848239344 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0952 - 20 + NaN NaN 106809 NaN 16229 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20024 81.844 NaN 50568 35 0 12885 0.261 + 30318 VKVPTEPL 8 25 441.76822041505295 881.5218878969059 2 441.7680358886719 MULTI HCD FTMS 0 0 0 20017 14019.388671875 0.0035911002333676558 24 -0.6750106811523438 7 Unmodified _VKVPTEPL_ ENSG00000019102|ENST00000326621|VSIG2;nc|ENSG00000019102|Q96IQ7-2|VSIG2 4.75600775471527 0.5349361699807423 1 V{I|L} 2 6 25.217 0 0 2.8606 0 0 651.3600941388687 0 651.3600941388687 0 22.74227503252014 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.8606 - 5 NaN NaN 85816 NaN 16230 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20025 81.847 NaN 111000 35 0 21375 0.261 + 10355 ILVLFQEE 8 45 495.7788177141515 989.543082495103 2 495.7791748046875 MULTI HCD FTMS 0 0 0 20017 15895.09765625 0.6143509162432806 1 -0.02950286865234375 8 Unmodified _ILVLFQEE_ REV__ENSG00000187775|ENST00000389840|DNAH17;REV__ENST00000586052.5_1_17:76450753-76471822:-|nuORF 5.230669730166228 0.5342319408533849 1 G 1 -1 3.0989 0 0 0.31317 0 0 456.320622633578 473.17441736392817 929.4950399975062 0 0 0 0 0 0 0 0 0 G 0.31317 - 1 + NaN NaN 96511.2 NaN 16231 3792 20017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20027 81.852 NaN 2166300 35 0 461780 0.327 + 32134 VYSIISVQL 9 79 511.29980577191066 1020.5850586106213 2 511.300048828125 MULTI HCD FTMS 0 0 0 20026 1357559.75 0.6163570790999903 3 -0.09522247314453125 1 Unmodified _VYSIISVQL_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant 149.91393105778798 8.917243180786556E-06 1 [YV]S{I|L}{I|L}SVQ{I|L} 9 0 + 98.229 0 0 9.6247 9.6247 89.132 0 0 0 1.0771841425634676 11.942992412184111 1.0771841425634676 1.0771841425634676 0 2.642159058960253 1.2218487496163564 2.0994850021680094 0 + + [YV]S{I|L}{I|L}SVQ{I|L};[VS]Y{I|L}{I|L}SVQ{I|L};[YV]S{I|L}{I|L}SV[AG]{I|L};[VS]Y{I|L}{I|L}SV[AG]{I|L};[VS]{I|L}{I|L}YSVQ{I|L};[YV][{I|L}T]VSVQ{I|L};[VS]{I|L}{I|L}YSV[AG]{I|L};[YV][{I|L}T]VSV[AG]{I|L};[VS]Q{I|L}[VS][Y{I|L}]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L}[VS][Y{I|L}]{I|L} 9.6247;9.5192;8.7225;8.6169;7.2852;7.0177;6.3829;6.1154;2.0602;0.91603 +;-;-;-;-;-;-;-;-;- + 905 NaN NaN 421002.9 NaN 16232 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20028 81.857 NaN 868550 35 0 147570 0.261 + 17196 LYMPKLLYF 9 61 594.330222176883 1186.645891420566 2 594.3305053710938 MULTI HCD FTMS 0 0 0 20026 623327.25 0.6873498503827855 3 -0.09522247314453125 2 Unmodified _LYMPKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 54.773552608820026 0.024892918755467567 1 {I|L}YMP[K{I|L}]{I|L}Y{M(Oxidation (M))|F} 9 0 + 76.348 0 0 6.4339 6.4339 87.256 0 0 0 42.90484985457368 11.39506772603255 11.39506772603255 7.7815125038364386 0 2.3494850021680094 1.6989700043360187 0 0 + + {I|L}YMP[K{I|L}]{I|L}Y{M(Oxidation (M))|F};{I|L}YM[K{I|L}]P{I|L}Y{M(Oxidation (M))|F} 6.4339;5.7782 +;- + 192 + NaN NaN 214715.2 NaN 16233 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20029 81.86 NaN 1198200 35 0 113710 0.261 + 31386 VYAFSIENF 9 110 545.2660558059999 1088.5175586787998 2 545.2664794921875 MULTI HCD FTMS 0 0 0 20026 482452.96875 0.7591641122696814 -2 0.052398681640625 3 Unmodified _VYAFSIENF_ ENSG00000117682|ENST00000236342|DHDDS;ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-2|DHDDS;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS 152.41221235671458 6.276234901293889E-06 1 [YV]A{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F} 9 0 + 110.54 0 0 10.155 10.155 95.661 0 0 0 6.015997613692278 6.015997613692278 6.015997613692278 12.703037561203843 0 2.9247425010840047 1.5228787452803376 1.3979400086720375 0.3494850021680094 + + [YV]A{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YV]A{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}N{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}G{[DA]|[EG]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}VS{I|L}EN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QV{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F};[YV]A{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}VS{I|L}EGG{M(Oxidation (M))|F} 10.155;8.9885;7.5623;6.7916;6.6365;6.5499;6.4788;6.3953;5.6246;5.3829 +;-;-;-;-;-;-;-;-;- + 2460 NaN NaN 261468 NaN 16234 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20030 81.864 NaN 689530 35 0 71980 0.261 + 32674 WPDWALPRL 9 87 577.3107851330863 1152.6070173329724 2 577.3115234375 MULTI HCD FTMS 0 0 0 20026 343397.4375 0.655912975323036 -3 0.0886688232421875 4 Unmodified _WPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 63.960520009940105 0.0120409805053046 1 WPDAW{I|L}PR{I|L} 9 2 + 75.485 0 0 6.5491 6.5491 84.257 0 0 0 20.16711877743475 0.5018968230078258 0.5018968230078258 0.5018968230078258 0 2.2658715643802765 1.3979400086720375 0 0.6505149978319906 WPDAW{I|L}PR{I|L};WPDAW{I|L}{I|L}[RP];WPDW{I|L}APR{I|L};WPDW{I|L}A{I|L}[RP];[WP]DAW{I|L}PR{I|L};[WP]DWA{I|L}PR{I|L};WPD[VP][RD]R{I|L};{[DA]|[EG]}PWW{I|L}PR{I|L};{[DA]|[EG]}PWW{I|L}{I|L}[RP];[WD]PAW{I|L}PR{I|L} 6.5491;6.5055;5.8541;5.8106;4.7994;4.3854;3.7033;3.3581;3.3145;2.4661 -;-;-;-;-;+;-;-;-;- + 382 + NaN NaN 192626.6 NaN 16235 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20031 81.867 NaN 402280 35 0 59962 0.261 + 26628 SWPDWALPRL 10 73 620.8271632702259 1239.6397736072518 2 620.8271484375 MULTI HCD FTMS 0 0 0 20026 142438.71875 0.08530965041909178 15 -0.42278289794921875 5 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 47.594388314883695 0.08653821083322558 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L} 7 3 60.934 0 0 4.9155 0 0 0 381.2253133509792 381.2253133509792 48.9840322369416 0 0 0 0 2 1.6989700043360187 0 0 + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L} 4.9155 + + 247 + NaN NaN 160918.9 NaN 16236 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20032 81.87 NaN 145390 35 0 6131.3 0.261 + 15063 LLTSVARLSF 10 76 553.8300970105657 NaN 0 553.8299560546875 PEAK HCD FTMS 0 0 0 20026 88878.71875 0.8017926815516464 6 -0.1672515869140625 6 Unmodified _LLTSVARLSF_ REV__ENSG00000162460|ENST00000375782|TMEM82 3.5964929083625545 0.337106189561315 1 D 1 -1 5.7133 0 0 0.51674 0 0 61.05465830940313 926.5181368463499 987.572795155753 0 0 0 0 0 0.3494850021680094 0 0 0 D 0.51674 - 93 + NaN NaN 104435.4 NaN 16237 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20033 81.874 NaN 145910 35 0 6380.9 0.261 + -1 VRMRLKPF 8 73 531.8172227618313 NaN 0 531.8169555664062 PEAK HCD FTMS 0 0 0 20026 80033.453125 0.5383230930045778 10 -0.27857208251953125 7 Oxidation (M) _VRM(Oxidation (M))RLKPF_ REV__ENSG00000153802|ENST00000283916|TMPRSS11D 5.760428011301431 0.38822285293237185 1 P 1 -1 5.4846 0 0 0.51662 0 0 164.17312852971878 797.3865450494749 961.5596735791937 0 0 0 0 0 0 0 0 0 P 0.51662 + + 7 + NaN NaN 104746.7 NaN 16238 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20034 81.877 NaN 332290 35 0 47963 0.261 + 11339 IYNETITDLL 10 76 597.8159560977527 1193.6173592623054 2 598.3021240234375 MULTI HCD FTMS 0 0 0 20026 44565.99609375 1 0 0 8 Unmodified _IYNETITDLL_ ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE 53.40400417844725 0.06540992187319636 1 [Y{I|L}]NET{I|L}TD{I|L}{I|L} 10 0 + 61.56 0 0 5.1574 5.1574 88.233 0 0 0 18.182503180159344 16.53212513775344 16.53212513775344 12.659389507179348 0 1.0172203223519531 2 0.4247425010840047 0.3494850021680094 + + [Y{I|L}]NET{I|L}TD{I|L}{I|L};[Y{I|L}]GGET{I|L}TD{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V[WP]TD{I|L}{I|L};[Y{I|L}]N[RK]C(Carbamidomethyl (C))D{I|L}{I|L};[Y{I|L}]GG[RK]C(Carbamidomethyl (C))D{I|L}{I|L};[Y{I|L}]N[RK][CG]D{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]ET{I|L}TD{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}{I|L}PC(Carbamidomethyl (C))D{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS][RK]C(Carbamidomethyl (C))D{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}{I|L}P[CG]D{I|L}{I|L} 5.1574;4.0968;3.6341;3.5239;2.7524;2.7524;2.4212;1.703;1.0768;0.93523 +;-;-;-;-;-;-;-;-;- + 517 NaN NaN 134843.5 NaN 16239 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20035 81.88 NaN 236660 35 0 27747 0.262 + 15049 LLSGSPTSVL 10 56 487.28160854428916 972.5486641553783 2 487.28173828125 MULTI HCD FTMS 0 0 0 20026 45738.9453125 0.4557261949279489 -1 0.02950286865234375 9 Unmodified _LLSGSPTSVL_ ENST00000520019.1_1_5:179229676-179233279:-|nuORF 18.1463463914782 0.3413772152514074 1 WSV{I|L} 4 7 34.073 0 0 3.5035 0 0 469.2638111798844 0 469.2638111798844 0 27.083428324247123 0 0 0 0.8807196863200843 0 0.5 0 WSV{I|L} 3.5035 - 68 NaN NaN 116144.5 NaN 16240 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20036 81.884 NaN 136250 35 0 21674 0.261 + 18167 MPDIDFNL 8 44 482.7259846683227 963.4374164034455 2 482.7257385253906 MULTI HCD FTMS 0 0 0 20026 75694.09375 0.4497720604469216 -6 0.17437744140625 10 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 26.88365393820708 0.39599352634412927 1 D{M(Oxidation (M))|F}N{I|L} 4 4 42.493 0 0 4.4105 0 0 456.2041187970719 0 456.2041187970719 0 27.800084529637985 0 0 0 0.8252574989159953 0 0 0.3807196863200844 + D{M(Oxidation (M))|F}N{I|L} 4.4105 + + 42 NaN NaN 101609.8 NaN 16241 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20037 81.887 NaN 155410 35 0 26899 0.261 + -1 FPVCCCLLL 9 57 562.767209693373 1123.519866453546 2 562.768798828125 MULTI HCD FTMS 0 0 0 20026 24513.064453125 0.3544759923624926 8 -0.22626495361328125 11 2 Carbamidomethyl (C) _FPVC(Carbamidomethyl (C))C(Carbamidomethyl (C))CLLL_ REV__ENST00000415822.6_2_3:158538073-158539436:+|nuORF;REV__ENST00000477743.1_3_3:158538073-158539826:+|nuORF 9.347437153973935 0.2795965555214564 1 {I|L}PE 3 -1 26.198 0 0 2.3318 0 0 766.3172474591812 0 766.3172474591812 0 20.255762612236907 0 0 0 0 0 0 0 {I|L}PE 2.3318 - 18 NaN NaN 105556.2 NaN 16242 3793 20026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20039 81.892 NaN 538090 35 0 81609 0.327 + 32152 VYSNSIYELL 10 62 600.8106946797909 1199.6068364263817 2 600.8110961914062 MULTI HCD FTMS 0 0 0 20038 310229.71875 0.5745812771957118 2 -0.0557403564453125 1 Unmodified _VYSNSIYELL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 121.34585337138759 3.68992589341548E-05 1 [YV]SNS{I|L}YE{I|L}{I|L} 10 0 + 104.46 0 0 8.7079 8.7079 95.772 0 0 0 3.7751372576825304 75.10213141451892 3.7751372576825304 21.4665863703802 0 2.6237125054200234 0 1.829689690656103 1.2302046884880937 + + [YV]SNS{I|L}YE{I|L}{I|L};[YV]SGGS{I|L}YE{I|L}{I|L} 8.7079;6.9184 +;- + 495 NaN NaN 160139.1 NaN 16243 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20040 81.896 NaN 1125000 35 0 94606 0.261 + 2796 DYIDTIWKI 9 102 583.8082079840551 1165.6018630349101 2 583.8084106445312 MULTI HCD FTMS 0 0 0 20038 528577.3125 0.7638760606307486 -2 0.0689849853515625 2 Unmodified _DYIDTIWKI_ ENSG00000156017|ENST00000376834|CARNMT1 137.42381684818497 0.00015474832393368816 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}WK{I|L} 9 0 + 115.44 0 0 9.9041 9.9041 95.77 0 0 0 25.960404702386782 13.807196863200843 13.807196863200843 13.807196863200843 0 2.5669015600442577 2 1.8169015600442577 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}WK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}W{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DTW{I|L}K{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DTW{I|L}{I|L}K;[{M(Oxidation (M))|F}E]{[ET]|[MV]}T{I|L}WK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[HG]|PP}Y{I|L}{[DA]|[EG]}K{I|L};[{M(Oxidation (M))|F}E]{[ET]|[MV]}T{I|L}W{I|L}K;{[QN]|[E{I|L}]|[KN]}M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VS]K{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}D[VP]{[MS]|[{M(Oxidation (M))|F}A]}VK;[{M(Oxidation (M))|F}E]P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[DA]|[EG]}K{I|L} 9.9041;8.7195;8.2528;7.0682;5.0978;4.5656;3.9133;3.898;3.6712;3.6398 +;-;-;-;-;-;-;-;-;- + 2275 NaN NaN 269381.3 NaN 16244 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20041 81.9 NaN 518750 35 0 74022 0.261 + 11321 IYLYTWSW 8 76 566.2791137695312 NaN 0 566.2977905273438 PEAK HCD FTMS 0 0 0 20038 6745.52294921875 0.8250072274861492 -1 0.03948211669921875 3 Unmodified _IYLYTWSW_ ENSG00000145283|ENST00000273905|SLC10A6 14.581692164780916 0.38795613832665576 1 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 6 7 12.056 0 0 1.0664 0 0 291.12047011543115 162.05605493717033 453.1765250526015 0 0 0 0 0 0.3807196863200844 0 0 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 1.0664 - 119 + NaN NaN 175899.4 NaN 16245 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20042 81.903 NaN 480820 35 0 65152 0.261 + 13454 KYPENFFLL 9 74 585.8132425088911 1169.6119320845821 2 585.8136596679688 MULTI HCD FTMS 0 0 0 20038 252774.75 0.0012749736707777914 227 -5.444862365722656 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 70.652 0 0 6.0407 6.0407 88.001 0 0 0 3.0969455516375177 57.94917177197476 3.0969455516375177 9.208187539523749 0 2.6237125054200234 0 0 1.031234684152075 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[EP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KT]EK{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KT]E{I|L}K 6.0407;5.2534;3.0394;1.6904;1.3544 +;-;-;-;- + 676 NaN NaN 153911.6 NaN 16246 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20043 81.907 NaN 394270 35 0 67075 0.261 + 17614 LYYDAIWHF 9 79 614.2951260546212 1226.5756991760422 2 614.2954711914062 MULTI HCD FTMS 0 0 0 20038 162903.3125 0.007115293739909286 59 -1.67462158203125 5 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 71.13359017698441 0.008721403657255008 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 80.072 0 0 6.5281 6.5281 86.097 0 0 0 4.483390329441406 4.483390329441406 4.483390329441406 4.483390329441406 0 2.5969100130080562 2 0 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};{I|L}YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}][DP]H[HV]S{I|L}{M(Oxidation (M))|F};[Y{I|L}][VS][{M(Oxidation (M))|F}E]WH{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV{[TV]|[{I|L}S]}D{I|L}{M(Oxidation (M))|F} 6.5281;6.1626;4.8606;4.4067;3.8202;3.5401;3.2515;3.217;3.2066;3.0434 +;+;-;-;-;-;-;-;-;- + 1276 + NaN NaN 145253.1 NaN 16247 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20044 81.91 NaN 479020 35 0 59037 0.261 + 6876 FPTVVIYVM 9 70 542.7909082805446 1083.5672636278891 2 542.7911376953125 MULTI HCD FTMS 0 0 0 20038 178673.484375 0.3691585900703012 -12 0.36168670654296875 6 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 63.562846038646086 0.012597299157545023 1 [Y{I|L}][PA][{I|L}V]YV{M(Oxidation (M))|F} 9 4 + 47.909 0 0 4.4215 4.4215 83.82 0 0 0 0.6420404410090441 19.33561654977865 0.6420404410090441 7.685690803236298 0 1.9247425010840047 1.3979400086720375 0 0 [Y{I|L}][PA][{I|L}V]YV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[{I|L}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{M(Oxidation (M))|F};[Y{I|L}]V[KC]RR{M(Oxidation (M))|F} 4.4215;3.7122;2.1302 -;-;- 223 NaN NaN 152670.6 NaN 16248 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20045 81.913 NaN 133030 35 0 19639 0.261 + 12266 KLPALFFL 8 45 474.7995409185883 947.5845289039767 2 474.7994384765625 MULTI HCD FTMS 0 0 0 20038 54323.0625 0.2688489409132962 4 -0.10816192626953125 7 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 30.224811164608877 0.3565035853404968 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 4 36.938 0 0 3.8981 0 0 409.2693043439469 0 409.2693043439469 0 34.463950151760656 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.8981 + + 23 NaN NaN 104287.7 NaN 16249 3794 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20047 81.918 NaN 915570 35 0 197130 0.327 + 11322 IYMDTLNIF 9 72 573.2809682998818 1144.5473836665635 2 573.2811279296875 MULTI HCD FTMS 0 0 0 20046 627178.6875 0.8023911833121399 -1 0.02622222900390625 1 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 144.35026110057638 1.4798765981150827E-05 1 [Y{I|L}]{M(Oxidation (M))|F}DT{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 90.71 0 0 7.9254 7.9254 93.901 0 0 0 3.65279269351241 65.30394370788876 3.65279269351241 16.588709367037282 0 2.8494850021680094 0 1.1307196863200843 0.805462187404089 + + [Y{I|L}]{M(Oxidation (M))|F}DT{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}DTQV{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}DT{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}DT[AG]V{I|L}{M(Oxidation (M))|F} 7.9254;6.476;6.4171;5.0661;4.9678 +;-;-;-;- + 616 NaN NaN 214988.5 NaN 16250 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20048 81.923 NaN 765910 35 0 141250 0.261 + 28561 TPTSVLDYF 9 69 521.7580287593171 1041.501504585434 2 521.7581787109375 MULTI HCD FTMS 0 0 0 20046 399527.46875 0.8815893914244985 -1 0.02622222900390625 2 Unmodified _TPTSVLDYF_ ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF;nc|ENSG00000035928|P35251|RFC1 78.14939416004806 0.006451203201226903 1 V{I|L}DY{M(Oxidation (M))|F} 5 4 55.305 0 0 5.3101 0 0 386.18062026191564 0 386.18062026191564 0 30.908336046439047 0 0 0 2.110924374808178 0 0.4247425010840047 0 + V{I|L}DY{M(Oxidation (M))|F} 5.3101 + + 127 NaN NaN 215611.1 NaN 16251 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20049 81.926 NaN 851280 35 0 108010 0.261 + 3096 EAIYNFEVL 9 72 549.278824430401 1096.5430959276018 2 549.279296875 MULTI HCD FTMS 0 0 0 20046 428914.90625 0.8023855713115503 -1 0.02622222900390625 3 Unmodified _EAIYNFEVL_ DSC3|p.F243L|1|0.25|ENSG00000134762|chr18:31024395-31024395|G/C|missense_variant;ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3 76.82478488871298 0.006879825292024087 1 YN{M(Oxidation (M))|F}EV{I|L} 6 3 65.756 0 0 5.9966 0 0 313.16365248847814 0 313.16365248847814 0 26.212600430434705 0 0 0 2.004432191740108 0 0.7742275032520141 0.7614393726401688 + YN{M(Oxidation (M))|F}EV{I|L} 5.9966 + + 1116 NaN NaN 218643.4 NaN 16252 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20050 81.929 NaN 417610 35 0 52590 0.261 + 27331 SYRELFEFF 9 65 619.298710409087 1236.582867884974 2 619.2980346679688 MULTI HCD FTMS 0 0 0 20046 234930.21875 0.9816410588341522 1 -0.02951812744140625 4 Unmodified _SYRELFEFF_ ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;SCNN1A-DCP1B|1|fusion;SCNN1A-DCP1B|2|fusion 65.47368725323818 0.010552856507075443 1 E{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 65.31 0 0 5.2815 0 0 406.19517714668126 0 406.19517714668126 0 47.836003313407076 0 0 0 1.805462187404089 0 0.7614393726401688 0 + E{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2815 + + 552 NaN NaN 153488.9 NaN 16253 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20051 81.933 NaN 906240 35 0 207220 0.261 + 24922 RYSNLILNLF 10 68 626.8558141957363 1251.6970754582726 2 626.8558959960938 MULTI HCD FTMS 0 0 0 20046 261024.640625 0.2555029816573396 -4 0.11810302734375 5 Unmodified _RYSNLILNLF_ ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF 42.067849460122346 0.12746220957372306 1 {I|L}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 6 4 63.933 0 0 5.1077 0 0 520.2383900373062 0 520.2383900373062 0 33.75569708000178 0 0 0 1.9247425010840047 0 0 0.805462187404089 + {I|L}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.1077 + + 147 NaN NaN 215614.5 NaN 16254 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20052 81.936 NaN 152670 35 0 15578 0.262 + 28028 TFYDGDVPI 9 47 513.7423125559842 1025.4700721787683 2 513.7433471679688 MULTI HCD FTMS 0 0 0 20046 63720.52734375 0.6188517267006661 2 -0.04573822021484375 6 Unmodified _TFYDGDVPI_ REV__ENSG00000128918|ENST00000249750|ALDH1A2;REV__nc|ENSG00000128918|O94788-2|ALDH1A2;REV__nc|ENSG00000128918|O94788-3|ALDH1A2;REV__nc|ENSG00000128918|O94788-4|ALDH1A2 15.847184025352803 0.2234401846867398 1 DDVP{I|L} 5 -1 31.95 0 0 3.1157 0 0 468.2007373172433 0 468.2007373172433 0 16.21977829623269 0 0 0 1.4247425010840047 0 0 0 DDVP{I|L} 3.1157 - 65 + NaN NaN 106890.8 NaN 16255 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20053 81.939 NaN 296770 35 0 37922 0.261 + 6205 FPENYVPTVF 10 47 606.8006499227157 1211.5867469122313 2 606.8013916015625 MULTI HCD FTMS 0 0 0 20046 98310.234375 0.6385825616864976 -1 0.02622222900390625 7 Unmodified _FPENYVPTVF_ ENSG00000115963|ENST00000263895|RND3 18.373094154950223 0.33925629317698053 1 [Y{I|L}][VS]VC[WP]V 9 8 43.847 0 0 3.619 0 0 0 162.0562033552957 162.0562033552957 13.669687155616401 0 0 0 0 1 2 0.8494850021680094 0 [Y{I|L}][VS]VC[WP]V 3.619 - 57 NaN NaN 125733.6 NaN 16256 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20054 81.943 NaN 202790 35 0 21528 0.261 + 5883 FPDGSFIQNL 10 59 569.2824977035177 1136.5504424738353 2 569.2826538085938 MULTI HCD FTMS 0 0 0 20046 72045.3671875 0.5168240915233807 -8 0.240081787109375 8 Unmodified _FPDGSFIQNL_ ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 43.77239144664712 0.11267038882370725 1 {I|L}QN{I|L} 4 6 45.433 0 0 3.9975 0 0 650.2723866193375 0 650.2723866193375 0 32.98577533287428 0 0 0 1.3252574989159953 0 0 0.3252574989159953 + {I|L}QN{I|L} 3.9975 + + 291 NaN NaN 126260.3 NaN 16257 3795 20046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20056 81.948 NaN 538320 35 0 22083 0.327 + 23098 RERTVLLD 8 85 501.2905065387472 1000.5664601442944 2 501.29071044921875 MULTI HCD FTMS 0 0 0 20055 554019.25 0.3942668896616797 36 -0.9966201782226562 1 Unmodified _RERTVLLD_ REV__ENSG00000110427|ENST00000658780|KIAA1549L;REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L 4.3292370932331545 0.5355693454741696 1 QV 2 -1 11.722 0 0 1.1715 0 0 502.2992410673023 268.12372766666255 770.4229687339648 0 0 0 0 0 0.4247425010840047 0 0 0 QV 1.1715 - 122 + NaN NaN 163337.1 NaN 16258 3796 20055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20057 81.952 NaN 653080 35 0 61511 0.261 + 18226 MPDPWAEFHL 10 103 621.7845448464901 1241.5545367597801 2 621.7848510742188 MULTI HCD FTMS 0 0 0 20055 330680.4375 1 0 0 2 Unmodified _MPDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 96.11092074494114 0.0005333825011732249 1 MPDPWAE{M(Oxidation (M))|F}H{I|L} 10 0 + 95.399 0 0 7.6838 7.6838 94.017 0 0 0 67.79213369186955 8.379231027444405 8.379231027444405 20.14081748137781 0 2.579689690656103 1.3010299956639813 0.6237125054200234 0 + + MPDPWAE{M(Oxidation (M))|F}H{I|L};{I|L}DDPEQE{M(Oxidation (M))|F}H{I|L};{I|L}DDP{[DA]|[EG]}AE{M(Oxidation (M))|F}H{I|L};MPDP{[DA]|[EG]}A[PG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};MPDPEQ[PG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};MPDP{[DA]|[EG]}A[VP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};MPDPEQ[VP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};MPDP{[DA]|[EG]}[QP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};MPDP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KD[HQ];[YN]A{M(Oxidation (M))|F}AME{M(Oxidation (M))|F}H{I|L} 7.6838;6.0616;5.8556;4.6417;4.5382;4.446;4.3424;3.9489;3.7172;3.6409 +;-;-;-;-;-;-;-;-;- + 3597 + NaN NaN 184451.1 NaN 16259 3796 20055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20058 81.956 NaN 252960 35 0 13091 0.261 + 25547 SFLTFICTF 9 63 539.7685223026608 1077.5224916721215 2 539.7693481445312 MULTI HCD FTMS 0 0 0 20055 36179.7890625 0.7442203361693764 1 -0.0162200927734375 3 Unmodified _SFLTFICTF_ REV__ENST00000588105.1_1_19:16222711-16223300:+|nuORF 16.942295170755138 0.21397866736869717 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T 4 -1 30.534 0 0 2.8337 0 0 0 626.2673091372184 626.2673091372184 12.1690811326777 0 0 0 0 0 2 0.2742275032520141 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T 2.8337 + + 293 NaN NaN 118817.5 NaN 16260 3796 20055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20059 81.959 NaN 130690 35 0 11009 0.261 -1 IYWMVNYNF 9 57 633.2862391865939 1264.5579254399877 2 633.7876586914062 MULTI HCD FTMS 0 0 0 20055 25661.58984375 0.4939448704408894 -2 0.0557403564453125 4 Oxidation (M) _IYWM(Oxidation (M))VNYNF_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 30.636539890814138 0.10832830463492794 1 VNYN{M(Oxidation (M))|F} 5 -1 48.232 0 0 3.8141 0 0 609.2635975568375 0 609.2635975568375 0 32.28978457299817 0 0 0 1.6549471895720984 0 0 0 VNYN{M(Oxidation (M))|F} 3.8141 + + 118 NaN NaN 106413.8 NaN 16261 3796 20055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20061 81.964 NaN 2204000 35 0 378100 0.327 + 35345 YYALEVSYF 9 104 577.7736665699496 1153.532780206699 2 577.774169921875 MULTI HCD FTMS 0 0 0 20060 873201.8125 0.19895503538952056 -6 0.16384124755859375 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 81.61307344734483 0.005330412723537057 1 P{I|L}{I|L}EVSY{M(Oxidation (M))|F} 8 3 69.171 0 0 5.9964 0 0 187.00515093484177 0 187.00515093484177 0 46.22899849925514 0 0 0 2.2134679910804405 0 0.7887254899964358 0 P{I|L}{I|L}EVSY{M(Oxidation (M))|F} 5.9964 - 2738 + NaN NaN 426412.5 NaN 16262 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20062 81.968 NaN 247200 35 0 31182 0.261 + 32153 VYSNSIYELL 10 51 600.8106946797909 1199.6068364263817 2 600.8112182617188 MULTI HCD FTMS 0 0 0 20060 168011.046875 0.3111758676293037 5 -0.1442718505859375 2 Unmodified _VYSNSIYELL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 69.33821966488729 0.018369488249132326 1 NS{I|L}YE{I|L}{I|L} 7 3 77.141 0 0 6.4305 0 0 349.16392714668126 0 349.16392714668126 0 67.53669175573954 0 0 0 2.305462187404089 0 0.8494850021680094 0.75 + NS{I|L}YE{I|L}{I|L} 6.4305 + + 144 NaN NaN 129663.7 NaN 16263 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20063 81.972 NaN 273810 35 0 29428 0.261 + 34584 YPNFLVNEL 9 55 554.786956832591 1107.559360731982 2 555.2890014648438 MULTI HCD FTMS 0 0 0 20060 156583.78125 1 0 0 3 Unmodified _YPNFLVNEL_ ENSG00000143207|ENST00000367669|COP1;nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1 27.628801355627647 0.12213550946336599 1 VNE{I|L} 4 5 34.412 0 0 3.1071 0 0 634.3113871739262 0 634.3113871739262 0 18.839256468719157 0 0 0 0.8494850021680094 0 0 0 + VNE{I|L} 3.1071 + + 57 NaN NaN 125782.4 NaN 16264 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20064 81.975 NaN 401780 35 0 81355 0.261 + 33149 YEKNFIESF 9 64 588.7818860289352 1175.5492191246703 2 588.7653198242188 MULTI HCD FTMS 0 0 0 20060 29196.931640625 0.1151505590947505 11 -0.31134033203125 4 Unmodified _YEKNFIESF_ REV__ENSG00000007350|ENST00000369915|TKTL1;REV__nc|ENSG00000007350|P51854-1|TKTL1;REV__nc|ENSG00000007350|P51854-4|TKTL1 9.38312468134398 0.279288223203164 1 YYA[HM]{I|L}AY 8 -1 37 0 0 3.1475 0 0 0 160.0737332332683 160.0737332332683 21.95554701812867 0 0 0 0 0 2 0 0 YYA[HM]{I|L}AY 3.1475 - 371 NaN NaN 137488.5 NaN 16265 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20065 81.978 NaN 88418 35 0 4553.5 0.262 -1 0 47 479.2773015711186 956.5400502090372 2 479.27716064453125 MULTI HCD FTMS 0 0 0 20060 77700.625 0.5522999206119675 4 -0.1148223876953125 5 NaN NaN 1 V 1 -1 4.6041 0 0 0.48133 0 0 586.3199096834497 268.12482629947505 854.4447359829248 0 0 0 0 0 0 0 0 0 V 0.48133 - 15 + NaN NaN 90923.6 NaN 16266 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20066 81.982 NaN 124140 35 0 48601 0.261 + 19244 NKRNQCLL 8 30 494.77090307232737 987.5272532114548 2 494.77117919921875 MULTI HCD FTMS 0 0 0 20060 57383.546875 0.5057340696323213 -3 0.07196044921875 6 Unmodified _NKRNQCLL_ ENST00000553932.5_1_14:39308236-39359955:-|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}{I|L} 2 6 25.969 0 0 2.6297 0 0 743.3510464170859 0 743.3510464170859 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6297 + + 6 NaN NaN 109556.5 NaN 16267 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20067 81.985 NaN 178220 35 0 18065 0.261 -1 MPVPEILQL 9 50 528.2936932626842 1054.5728335921683 2 528.2940063476562 MULTI HCD FTMS 0 0 0 20060 25709.5546875 0.10550772238799998 14 -0.38655853271484375 7 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 18.1463463914782 0.20357593197100715 1 {I|L}{I|L}Q{I|L} 4 -1 38.8 0 0 3.6792 0 0 569.2505360334 0 569.2505360334 0 30.728050365394424 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}Q{I|L} 3.6792 + + 32 NaN NaN 112233.2 NaN 16268 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20068 81.988 NaN 221800 35 0 23965 0.261 -1 0 72 560.2696911377695 559.2624146711695 1 560.2705688476562 MULTI HCD FTMS 0 0 0 20060 71564.96875 1 0 0 8 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 2.4996 0 0 394.1831890625742 0 394.1831890625742 0 2.016675202793719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.4996 - 45 + NaN NaN 116531.2 NaN 16269 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20069 81.992 NaN 378030 35 0 41891 0.261 + -1 KMMVKAEEIF 10 66 629.3128909092509 NaN 0 629.3135375976562 PEAK HCD FTMS 0 0 0 20060 52265.71875 0.6558147974491693 4 -0.1148223876953125 9 2 Oxidation (M) _KM(Oxidation (M))M(Oxidation (M))VKAEEIF_ REV__ENSG00000074966|ENST00000264316|TXK;REV__ENSG00000135605|ENST00000381501|TEC 6.723162845929126 0.3344301934401713 1 {I|L}{I|L} 2 -1 8.5835 0 0 0.68307 0 0 166.00302102700067 861.4177340143186 1027.4207550413194 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.68307 - 144 + NaN NaN 142971.9 NaN 16270 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20070 81.995 NaN 176760 35 0 13824 0.261 + 29201 TYLATIHLSYL 11 53 647.8554246977817 1293.6962964623633 2 647.8558959960938 MULTI HCD FTMS 0 0 0 20060 35294.234375 0.5996656328585073 3 -0.0919647216796875 10 Unmodified _TYLATIHLSYL_ TAPBP|p.P276S|1|0.43|ENSG00000231925|chr6:33305031-33305031|G/A|missense_variant 5.296884461304476 0.39569033063702824 1 {I|L}{I|L}SY{I|L} 5 6 15.802 0 0 1.2215 0 0 686.3409630656821 0 686.3409630656821 0 0.3617091075865968 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L}SY{I|L} 1.2215 - 48 + NaN NaN 128260.4 NaN 16271 3797 20060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20072 82 NaN 738500 35 0 149240 0.327 + 32135 VYSIISVQL 9 60 511.29980577191066 1020.5850586106213 2 511.3002014160156 MULTI HCD FTMS 0 0 0 20071 376951.75 0.17114302305414533 8 -0.21612548828125 1 Unmodified _VYSIISVQL_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant 114.20165948288297 0.0022564706844261533 1 [YV]S{I|L}{I|L}SVQ{I|L} 9 0 + 82.488 0 0 8.0825 8.0825 91.544 0 0 0 7.727562184969372 57.41644061128262 7.727562184969372 9.208187539523749 0 2.6861818737241734 0 2.055462187404089 0 + + [YV]S{I|L}{I|L}SVQ{I|L};[YV]S{I|L}{I|L}SV[AG]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L}[VS][Y{I|L}]{I|L} 8.0825;7.1802;0.52322 +;-;- + 207 NaN NaN 208565.6 NaN 16272 3798 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20073 82.004 NaN 651210 35 0 147020 0.261 + -1 WDEMHQSMQ 9 69 604.22935668893 1206.44416044466 2 604.2296752929688 MULTI HCD FTMS 0 0 0 20071 219223.765625 0.488041415297463 -7 0.200042724609375 2 Oxidation (M) _WDEMHQSM(Oxidation (M))Q_ REV__ENSG00000120915|ENST00000521400|EPHX2;REV__nc|ENSG00000120915|P34913-2|EPHX2;REV__nc|ENSG00000120915|P34913-3|EPHX2 1.844237919475145 0.33703635659052655 1 VSY{M(Oxidation (M))|F} 4 -1 16.102 0 0 1.3347 0 0 692.2020323026385 0 692.2020323026385 0 11.040397206915172 0 0 0 0.8935078169319297 0 0 0 VSY{M(Oxidation (M))|F} 1.3347 - 56 NaN NaN 195964.4 NaN 16273 3798 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20074 82.008 NaN 358550 35 0 66328 0.262 + 3175 EAVVFEAVL 9 61 488.7711209630706 975.5276889929412 2 488.7711181640625 MULTI HCD FTMS 0 0 0 20071 139884 0.5728933669078099 -2 0.05242156982421875 3 Unmodified _EAVVFEAVL_ BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6 88.90359156742426 0.00455469703666567 1 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L} 9 2 + 88.554 0 0 9.0775 9.0775 98.622 0 0 0 18.65279269351241 81.98715432778343 18.65279269351241 88.55397298147196 0 2.3494850021680094 1.3010299956639813 1.4916440611282626 0 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L} 9.0775 - 214 NaN NaN 157897.4 NaN 16274 3798 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20075 82.011 NaN 286320 35 0 22055 0.261 + 25548 SFLTFICTF 9 61 539.7685223026608 1077.5224916721215 2 540.25634765625 MULTI HCD FTMS 0 0 0 20071 12794.837890625 0.4960898307884109 -2 0.05242156982421875 4 Unmodified _SFLTFICTF_ REV__ENST00000588105.1_1_19:16222711-16223300:+|nuORF 15.847184025352803 0.2234401846867398 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[CT]|[{M(Oxidation (M))|F}G]}S 9 -1 38.663 0 0 3.5881 0 0 0 161.0824900212547 161.0824900212547 17.63174048436924 0 0 0 0 0 1.6989700043360187 1.0044321917401078 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[CT]|[{M(Oxidation (M))|F}G]}S 3.5881 - 219 NaN NaN 123900.8 NaN 16275 3798 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20076 82.015 NaN 148760 35 0 8884.4 0.261 + 22868 QYNTYPIKLF 10 61 643.8423577437807 1285.6701625543612 2 644.3433837890625 MULTI HCD FTMS 0 0 0 20071 35070.66796875 0.4985278086632127 -6 0.17714691162109375 5 Unmodified _QYNTYPIKLF_ ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 13.042465956692817 0.38911719078024076 1 {I|L}{M(Oxidation (M))|F} 2 8 24.464 0 0 1.9028 0 0 1007.5138181609343 0 1007.5138181609343 0 11.276362525516532 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.9028 + + 37 NaN NaN 110636.5 NaN 16276 3798 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20078 82.02 NaN 1530800 35 0 323890 0.327 + 2399 DPLGYEIQL 9 75 524.2714734100535 1046.528393886907 2 524.2716064453125 MULTI HCD FTMS 0 0 0 20077 943088.875 1 0 0 1 Unmodified _DPLGYEIQL_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 114.20165948288297 0.0022564706844261533 1 GYE{I|L}Q{I|L} 6 3 66.643 0 0 6.368 0 0 325.1626454084 0 325.1626454084 0 40.52087704725292 0 0 0 2.1549471895720984 0 0.7059771852360797 0.3252574989159953 + GYE{I|L}Q{I|L} 6.368 + + 625 NaN NaN 310092 NaN 16277 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20079 82.024 NaN 922630 35 0 137270 0.261 + 27928 TENDIYNFF 9 83 581.75575666065 1161.4969603881 2 581.7560424804688 MULTI HCD FTMS 0 0 0 20077 672302.3125 0.684523321268138 -3 0.07202911376953125 2 Unmodified _TENDIYNFF_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 103.35351024395868 0.004027461563756449 1 {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 76.098 0 0 6.5517 6.5517 88.927 0 0 0 4.137342758552691 32.92674056792244 4.137342758552691 9.208187539523749 0 2.242992819099939 0 1.5044321917401078 1.2302046884880937 + + {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}ND{I|L}YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};MVVNY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};MVVNY{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};MVVGGY{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ET]|[MV]}ND{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[VP][QT] 6.5517;5.7589;5.4311;2.2968;1.8663;1.0736;0.050014 +;-;-;-;-;-;- + 898 NaN NaN 219555.9 NaN 16278 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20080 82.028 NaN 276130 35 0 37566 0.262 + 18168 MPDIDFNL 8 45 482.7259846683227 963.4374164034455 2 482.72576904296875 MULTI HCD FTMS 0 0 0 20077 168294.34375 1 0 0 3 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 46.020951573049366 0.15358337540685318 1 {NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}N{I|L} 8 0 + 46.688 0 0 4.8459 4.8459 86.709 0 0 0 0.45757490560674796 31.792972196075127 0.45757490560674796 9.262137858390808 0 1.079689690656103 0 0 0.3494850021680094 + + {NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{NN|[MP]|[D{I|L}]|[EV]}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{NN|[MP]|[D{I|L}]|[EV]}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D[{I|L}P][MN] 4.8459;3.8846;3.6193;2.658;0.79139 +;-;-;-;- + 101 NaN NaN 121199.7 NaN 16279 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20081 82.031 NaN 328680 35 0 33212 0.261 + 17197 LYMPKLLYF 9 66 594.330222176883 1186.645891420566 2 594.330322265625 MULTI HCD FTMS 0 0 0 20077 143395.671875 0.15812399282851863 9 -0.25553131103515625 4 Unmodified _LYMPKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 34.10243960390752 0.09241788333544565 1 [Y{I|L}]M[K{I|L}]P{I|L}Y{M(Oxidation (M))|F} 9 2 + 38.279 0 0 3.2258 3.2258 88.411 0 0 0 9.778930903698189 0.11825290465247207 0.11825290465247207 38.27886537146306 0 2.1677353201839438 1.6989700043360187 0 0 [Y{I|L}]M[K{I|L}]P{I|L}Y{M(Oxidation (M))|F} 3.2258 - 133 + NaN NaN 126199.6 NaN 16280 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20082 82.034 NaN 224520 35 0 15566 0.261 + 32154 VYSNSIYELL 10 60 600.8106946797909 1199.6068364263817 2 600.8111572265625 MULTI HCD FTMS 0 0 0 20077 72864.625 0.13495370289983413 7 -0.1965179443359375 5 Unmodified _VYSNSIYELL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 26.020703789607367 0.2677231329712098 1 {I|L}YE{I|L}{I|L} 5 5 49.464 0 0 4.1233 0 0 550.2374932701146 0 550.2374932701146 0 43.979400086720375 0 0 0 1.5 0 0 0 + {I|L}YE{I|L}{I|L} 4.1233 + + 90 NaN NaN 116793.7 NaN 16281 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20083 82.038 NaN 476800 35 0 137600 0.261 + 35553 YYHAQCNFF 9 67 596.7474810089391 1191.480409084678 2 596.7478637695312 MULTI HCD FTMS 0 0 0 20077 79949.1171875 0.47190459062507206 -3 0.07202911376953125 6 Unmodified _YYHAQCNFF_ ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1 16.942295170755138 0.21397866736869717 1 YY[YG][{M(Oxidation (M))|F}T]SY 8 7 40.92 0 0 3.4344 0 0 0 144.0468830957449 144.0468830957449 3.753246544333777 0 0 0 0 0.7302046884880937 2 1.3494850021680094 0 YY[YG][{M(Oxidation (M))|F}T]SY 3.4344 - 171 NaN NaN 171193.2 NaN 16282 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20084 82.041 NaN 363130 35 0 25592 0.261 + 23150 RFILNLPTF 9 76 560.8295653499299 1119.6445777666597 2 560.8294677734375 MULTI HCD FTMS 0 0 0 20077 37131.703125 0.005365410328858703 61 -1.7470169067382812 7 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 15.847184025352803 0.2234401846867398 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C 9 6 55.965 0 0 4.9984 0 0 0 129.2016256623174 129.2016256623174 20.470289513353066 0 0 0 0 0 2 1.1861818737241734 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C 4.9984 - 922 NaN NaN 140594.7 NaN 16283 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20085 82.044 NaN 51016 35 0 6117.5 0.263 + 30319 VKVPTEPL 8 37 441.76822041505295 881.5218878969059 2 441.76849365234375 MULTI HCD FTMS 0 0 0 20077 6508.763671875 0.0016672355184713745 31 -0.8689651489257812 8 Unmodified _VKVPTEPL_ ENSG00000019102|ENST00000326621|VSIG2;nc|ENSG00000019102|Q96IQ7-2|VSIG2 2.0597508629832335 0.5389364538378849 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.9273 0 0 716.4764605060841 0 716.4764605060841 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.9273 - 8 + NaN NaN 89000.4 NaN 16284 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20086 82.048 NaN 157480 35 0 15822 0.261 + 30031 VFPYEPFL 8 50 506.2644488000912 NaN 0 506.25469970703125 PEAK HCD FTMS 0 0 0 20077 10660.8671875 1 0 0 9 Unmodified _VFPYEPFL_ ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C;UBE3C-PTPRN2|1|fusion 5.230669730166228 0.38822285293237185 1 D{I|L} 2 7 9.464 0 0 0.93655 0 0 131.1124414460824 648.2673433893186 779.3797848354011 0 0 0 0 0 0 0 0 0 D{I|L} 0.93655 - 37 + NaN NaN 98686.9 NaN 16285 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20087 82.051 NaN 193890 35 0 18255 0.261 + 31032 VSRLYYPEIF 10 67 643.8423577437807 1285.6701625543612 2 643.8427734375 MULTI HCD FTMS 0 0 0 20077 60008.17578125 0.72520301737767 -4 0.1015472412109375 10 Unmodified _VSRLYYPEIF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533661.1_1_11:10038431-10064504:-|nuORF;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 13.042465956692817 0.38911719078024076 1 T{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F} 5 8 27.461 0 0 2.1359 0 0 718.43852431465 0 718.43852431465 0 17.003187623076954 0 0 0 0.3252574989159953 0 0.5 0 T{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F} 2.1359 - 85 NaN NaN 122987.7 NaN 16286 3799 20077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20089 82.056 NaN 720600 35 0 90930 0.327 + 21059 PLVTFVYVF 9 69 542.8095426815981 NaN 0 542.791259765625 PEAK HCD FTMS 0 0 0 20088 8560.3642578125 0.601293996370483 1 -0.022857666015625 1 Unmodified _PLVTFVYVF_ ENSG00000092068|ENST00000316902|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8 30.224811164608877 0.11876709777893199 1 TVY 3 6 16.198 0 0 1.4948 0 0 64.03551409773623 653.3668031746839 717.4023172724202 0 0 0 0 0 0 0 0 0 TVY 1.4948 - 126 + NaN NaN 194566.9 NaN 16287 3800 20088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20090 82.06 NaN 796030 35 0 59910 0.261 + 13455 KYPENFFLL 9 98 585.8132425088911 1169.6119320845821 2 585.8133544921875 MULTI HCD FTMS 0 0 0 20088 278523.65625 0.00140484889573628 233 -5.598274230957031 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 49.782 0 0 4.2563 4.2563 83.348 0 0 0 3.261518613495511 22.61468602046348 3.261518613495511 7.001962355242952 0 1.7179001828205482 0 0.4247425010840047 0.5044321917401079 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][NP]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}[{M(Oxidation (M))|F}E][NP]K{I|L};[YK]TT[MN][TA]K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[{M(Oxidation (M))|F}E][NP]K{I|L};[Y{M(Oxidation (M))|F}]{I|L}{[ES]|[DT]|[{I|L}C]}V{[RE]|[WV]}K;[Y{M(Oxidation (M))|F}]{I|L}[{M(Oxidation (M))|F}E]K[NP]{I|L} 4.2563;3.6576;3.469;3.151;3.151;1.3562;1.2554;0.89104;0.86553;0.67019 +;-;-;-;-;-;-;-;-;- + 2048 NaN NaN 219982.1 NaN 16288 3800 20088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20091 82.064 NaN 578910 35 0 77676 0.261 + 6136 FPEGLITGSLP 11 75 565.8082770126997 1129.6020010921993 2 566.297607421875 MULTI HCD FTMS 0 0 0 20088 23805.27734375 0.5108032974913759 -8 0.23291015625 3 Unmodified _FPEGLITGSLP_ ENSG00000106477|ENST00000223208|CEP41;ENST00000603513.1_1_7:130039868-130040375:-|nuORF 16.149105407346934 0.31637472687818013 1 C(Carbamidomethyl (C))PS{I|L}M{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 9 28.638 0 0 2.5352 0 0 130.16146261739306 0 130.16146261739306 0 7.830918867322296 0 0 0 0.3935078169319297 0 0 0 C(Carbamidomethyl (C))PS{I|L}M{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.5352 - 457 + NaN NaN 187014.7 NaN 16289 3800 20088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20092 82.067 NaN 424320 35 0 71339 0.261 + 17615 LYYDAIWHF 9 81 614.2951260546212 1226.5756991760422 2 614.2957763671875 MULTI HCD FTMS 0 0 0 20088 188874.390625 0.008249658945659828 65 -1.8619232177734375 4 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 85.35673624503755 0.00464763827098139 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 80.869 0 0 6.593 6.593 91.487 0 0 0 13.909328277719766 13.909328277719766 13.909328277719766 16.052659518797938 0 2.274227503252014 2 0.3054621874040891 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};YY{I|L}DA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F};YY{I|L}W{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F} 6.593;5.2843;4.6962;4.2741;4.205;3.9513;3.0434;2.9065;2.8358;2.6425 +;-;-;-;-;-;-;-;-;- + 1537 NaN NaN 155992.6 NaN 16290 3800 20088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20093 82.07 NaN 910770 35 0 34148 0.261 + 31387 VYAFSIENF 9 117 545.2660558059999 1088.5175586787998 2 545.2662353515625 MULTI HCD FTMS 0 0 0 20088 156754.421875 0.24666099959009008 5 -0.13085174560546875 5 Unmodified _VYAFSIENF_ ENSG00000117682|ENST00000236342|DHDDS;ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-2|DHDDS;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS 107.1870275148908 0.00340162908551068 1 [YV]A{M(Oxidation (M))|F}{[TV]|[{I|L}S]}EGG{M(Oxidation (M))|F} 10 2 + 72.898 0 0 6.697 6.697 84.358 0 0 0 7.102810157721734 7.102810157721734 7.102810157721734 0.15002021610898453 0 2.447621246364342 1.3010299956639813 0.3807196863200844 0 [YV]A{M(Oxidation (M))|F}{[TV]|[{I|L}S]}EGG{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}{[TV]|[{I|L}S]}EN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}{[TV]|[{I|L}S]}GEG{M(Oxidation (M))|F};[YV]A[{I|L}A]YEN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QV{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}[SG]{I|L}EG{M(Oxidation (M))|F};[YV]A[{I|L}A]YEGG{M(Oxidation (M))|F};[YV]AQY{I|L}EG{M(Oxidation (M))|F};[YV]A[{I|L}A]EYN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}S{NN|[MP]|[D{I|L}]|[EV]} 6.697;6.6832;5.5304;4.8241;4.1427;3.9449;3.7263;3.7063;3.5884;3.5749 -;+;-;-;-;-;-;-;-;- + 4450 + NaN NaN 225086.9 NaN 16291 3800 20088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20094 82.074 NaN 791990 35 0 74667 0.261 + 12453 KQMPEGSMLV 10 95 560.2819313401396 NaN 0 560.2645874023438 PEAK HCD FTMS 0 0 0 20088 16957.8671875 0.8422578809847975 2 -0.05230712890625 6 Unmodified _KQMPEGSMLV_ SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|32|2|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense 19.256988751693697 0.2866536677172102 1 C{I|L}EHGT{I|L} 7 8 46.521 0 0 4.1591 0 0 131.13022320167028 231.07721887760002 362.2074420792703 0 0 0 0 0 0.2059771852360797 0 1.7786596949921218 0 C{I|L}EHGT{I|L} 4.1591 - 728 + NaN NaN 200003.4 NaN 16292 3800 20088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20096 82.079 NaN 920980 35 0 184440 0.327 + 11323 IYMDTLNIF 9 77 573.2809682998818 1144.5473836665635 2 573.281494140625 MULTI HCD FTMS 0 0 0 20095 635818 0.8134440272911189 5 -0.13750457763671875 1 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 160.51597146486608 8.986712039288196E-09 1 DT{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 83.364 0 0 7.2836 0 0 423.18333632636876 0 423.18333632636876 0 56.49243537057359 0 0 0 2.7302046884880937 0 1.4247425010840047 0.7614393726401688 + DT{I|L}N{I|L}{M(Oxidation (M))|F} 7.2836 + + 1016 NaN NaN 237622 NaN 16293 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20097 82.083 NaN 564930 35 0 54279 0.261 -1 0 85 501.2905065387472 1000.5664601442944 2 501.2906799316406 MULTI HCD FTMS 0 0 0 20095 426684.25 0.3036491459730444 41 -1.1644439697265625 2 NaN NaN 1 Q 1 -1 12.787 0 0 1.2779 0 0 458.27206802174277 411.22251484063014 869.4945828623729 0 0 0 0 0 0.7302046884880937 0 0 0 Q 1.2779 - 185 + NaN NaN 174644.1 NaN 16294 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20098 82.087 NaN 740150 35 0 87071 0.261 + 17889 MILELDPTF 9 66 547.7753373336277 1093.5361217340553 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20095 331404.28125 0.06505120630741225 -14 0.40064239501953125 3 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 147.8311659463005 1.1118996804784084E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 85.328 0 0 7.8029 7.8029 94.611 0 0 0 3.391945635190723 46.16827851303362 3.391945635190723 24.146518864155126 0 2.822682509756042 2 0.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}EE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}E{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}EE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}E{I|L}{I|L} 7.8029;5.5948;5.0169;4.9102;4.513;4.5112;4.4611;3.7373;3.6853;3.2567 +;-;-;-;-;-;-;-;-;- + 644 NaN NaN 194057.3 NaN 16295 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20099 82.09 NaN 380600 35 0 16646 0.261 -1 0 88 509.8036971120352 1017.5928412908704 2 509.8037414550781 MULTI HCD FTMS 0 0 0 20095 183733.828125 0.21770494281113514 37 -1.0462112426757812 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3738 0 0 852.5137072350095 0 852.5137072350095 0 0.12758901205666007 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3738 - 249 + NaN NaN 142795.6 NaN 16296 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20100 82.093 NaN 400730 35 0 53259 0.261 + 28562 TPTSVLDYF 9 50 521.7580287593171 1041.501504585434 2 521.7579345703125 MULTI HCD FTMS 0 0 0 20095 132422.0625 0.2921998976836356 5 -0.13750457763671875 5 Unmodified _TPTSVLDYF_ ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF;nc|ENSG00000035928|P35251|RFC1 57.47134341890925 0.0211188941628804 1 {I|L}DY{M(Oxidation (M))|F} 4 5 51.23 0 0 4.9189 0 0 485.24822044301294 0 485.24822044301294 0 45.74539712336197 0 0 0 1.6549471895720984 0 0.4247425010840047 0 + {I|L}DY{M(Oxidation (M))|F} 4.9189 + + 38 NaN NaN 150354 NaN 16297 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20101 82.097 NaN 320540 35 0 34791 0.261 + 6206 FPENYVPTVF 10 65 606.8006499227157 1211.5867469122313 2 606.8007202148438 MULTI HCD FTMS 0 0 0 20095 123893.0078125 0.8047576613658288 5 -0.13750457763671875 6 Unmodified _FPENYVPTVF_ ENSG00000115963|ENST00000263895|RND3 18.373094154950223 0.33925629317698053 1 [Y{I|L}][VS]V 5 7 35.33 0 0 2.916 0 0 0 647.2488312230313 647.2488312230313 15.865743447727638 0 0 0 0 1 2 0.4247425010840047 0 [Y{I|L}][VS]V 2.916 - 74 NaN NaN 132409 NaN 16298 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20102 82.1 NaN 258700 35 0 18763 0.261 + -1 QTDACSTTEW 10 65 599.7365311448051 1197.45850935641 2 599.7562255859375 MULTI HCD FTMS 0 0 0 20095 29600.611328125 0.5097991825862934 3 -0.07849884033203125 7 Carbamidomethyl (C) _QTDAC(Carbamidomethyl (C))STTEW_ REV__ENSG00000139192|ENST00000266556|TAPBPL;REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF;REV__nc|ENSG00000139192|Q9BX59-2|TAPBPL;REV__nc|ENSG00000139192|Q9BX59-3|TAPBPL;REV__nc|ENSG00000139192|Q9BX59-5|TAPBPL 3.5964929083625545 0.45626689593999237 1 PYSV{M(Oxidation (M))|F} 5 -1 26.542 0 0 2.2166 0 0 88.01727528615841 513.1668795221311 601.1841548082896 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 PYSV{M(Oxidation (M))|F} 2.2166 - 99 + NaN NaN 118462.3 NaN 16299 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20103 82.103 NaN 312740 35 0 23754 0.261 + 5884 FPDGSFIQNL 10 70 569.2824977035177 1136.5504424738353 2 569.2826538085938 MULTI HCD FTMS 0 0 0 20095 135419.59375 0.9714449554009921 -2 0.05901336669921875 8 Unmodified _FPDGSFIQNL_ ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 36.506200033944 0.17572556831573002 1 {NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YG]AQN{I|L} 10 5 + 48.205 0 0 4.2413 4.2413 81.832 0 0 0 1.5176604868444485 16.99015233922374 1.5176604868444485 3.521825181113627 0 1 0 0.3807196863200844 0.7742275032520141 {NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YG]AQN{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]QN{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP][YG]AQN{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP][YQ]QN{I|L} 4.2413;3.9315;3.514;3.2042 -;-;-;- 598 NaN NaN 127026.1 NaN 16300 3801 20095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20105 82.108 NaN 6221800 35 0 1495000 0.327 + 35346 YYALEVSYF 9 89 577.7736665699496 1153.532780206699 2 577.7743530273438 MULTI HCD FTMS 0 0 0 20104 3822316 0.870897201727843 -1 0.029449462890625 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 154.46347324262513 4.107785341423729E-06 1 YYA{I|L}EVSY{M(Oxidation (M))|F} 9 0 + 104.11 0 0 9.0252 9.0252 94.315 0 0 0 1.365006360318688 1.365006360318688 1.365006360318688 11.211375162600703 0 3.1307196863200843 1.3979400086720375 1.5 0 + + YYA{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};YYA{I|L}D{I|L}SY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}D{I|L}SY{M(Oxidation (M))|F};YYAVE{I|L}SY{M(Oxidation (M))|F};YYA{I|L}TVDY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}VE{I|L}SY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}TVDY{M(Oxidation (M))|F};[{I|L}A]YYEVSY{M(Oxidation (M))|F};[PS][SG]SVE{I|L}[MT]{M(Oxidation (M))|F} 9.0252;8.0533;7.6352;6.6633;6.6611;6.5505;5.6892;5.5786;5.551;5.3598 +;-;-;-;-;-;-;-;-;- + 1464 NaN NaN 520664 NaN 16301 3802 20104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20106 82.112 NaN 863830 35 0 55054 0.261 + 32145 VYSLQQFGF 9 100 544.774382308405 1087.53421168361 2 544.7744750976562 MULTI HCD FTMS 0 0 0 20104 336425.8125 0.7006832908239973 -3 0.08846282958984375 2 Unmodified _VYSLQQFGF_ ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L 144.35026110057638 1.4798765981150827E-05 1 [YV]S{I|L}QQ{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 105.24 0 0 9.6766 9.6766 93.574 0 0 0 15.20181229336984 66.98683365167653 15.20181229336984 9.208187539523749 0 2.805462187404089 1.0969100130080565 1.6549471895720984 0.8851518780601924 + + [YV]S{I|L}QQ{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S{I|L}Q[AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S{I|L}[AG]Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S{I|L}[AG][AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}V[YT]Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}V[YT][AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S[TA]S{M(Oxidation (M))|F}KW;[YV]S[TA]S[WK]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[Y{I|L}]Y[QA]QV;{[CT]|[{M(Oxidation (M))|F}G]}[Y{I|L}]Q{M(Oxidation (M))|F}SQV 9.6766;8.8299;8.8299;7.1733;5.9523;5.1056;2.7473;2.6594;1.8291;1.8254 +;-;-;-;-;-;-;-;-;- + 3209 NaN NaN 214876.5 NaN 16302 3802 20104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20107 82.116 NaN 294880 35 0 26241 0.261 + 18227 MPDPWAEFHL 10 76 621.7845448464901 1241.5545367597801 2 621.7848510742188 MULTI HCD FTMS 0 0 0 20104 126345.6796875 0.382077877490107 6 -0.1670684814453125 3 Unmodified _MPDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 60.07390631473393 0.04115296186411585 1 MPDPWAE{M(Oxidation (M))|F}[H{I|L}] 10 0 + 67.375 0 0 5.4267 5.4267 85.033 0 0 0 45.94843468456581 4.884381005764311 4.884381005764311 6.505149978319906 0 1.829689690656103 0 0.3494850021680094 0 + + MPDPWAE{M(Oxidation (M))|F}[H{I|L}];MPDPWAE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};MPDP{[CP]|[EA]}W{M(Oxidation (M))|F}[H{I|L}];{I|L}DDP{[CP]|[EA]}GE{M(Oxidation (M))|F}[H{I|L}];MPDPW{M(Oxidation (M))|F}{[CP]|[EA]}[H{I|L}];{I|L}DDP{[CP]|[EA]}W{M(Oxidation (M))|F}[H{I|L}];{I|L}DDPW{M(Oxidation (M))|F}{[CP]|[EA]}[H{I|L}];MPDP{[CP]|[EA]}GE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};MPDP{[CP]|[EA]}W{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};{I|L}DDP{[CP]|[EA]}GE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 5.4267;4.9027;3.7008;3.6073;3.5707;3.4584;3.3283;3.3258;3.1769;3.0833 +;-;-;-;-;-;-;-;-;- + 683 + NaN NaN 131613.2 NaN 16303 3802 20104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20108 82.119 NaN 118230 35 0 10357 0.262 -1 0 56 531.8170281056758 1061.6195032781516 2 531.817138671875 MULTI HCD FTMS 0 0 0 20104 72698.8671875 0.07088273629907131 -21 0.6040802001953125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6004 0 0 896.5405523277594 0 896.5405523277594 0 2.2969624387961556 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6004 - 30 + NaN NaN 108307 NaN 16304 3802 20104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20109 82.123 NaN 377880 35 0 58030 0.261 + 24996 RYVPGLLLSYL 11 55 647.3816678290327 1292.7487827248654 2 647.8831787109375 MULTI HCD FTMS 0 0 0 20104 51653.78515625 0.5027550191024848 -1 0.029449462890625 5 Unmodified _RYVPGLLLSYL_ ENSG00000141699|ENST00000309428|RETREG3 49.52724829834842 0.08335959434070021 1 P{I|L}G{I|L}{I|L}SY{I|L} 8 5 76.579 0 0 5.9238 0 0 418.23265591525643 0 418.23265591525643 0 69.5897380381659 0 0 0 2.3494850021680094 0 1 0 P{I|L}G{I|L}{I|L}SY{I|L} 5.9238 - 62 NaN NaN 140716.5 NaN 16305 3802 20104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20110 82.126 NaN 195540 35 0 17160 0.262 + 21466 PYAIAPAWTI 10 64 551.800181132738 1101.5858093322759 2 551.8007202148438 MULTI HCD FTMS 0 0 0 20104 81562.8359375 0.8280456806491597 -1 0.029449462890625 6 Unmodified _PYAIAPAWTI_ REV__nc|ENSG00000141867|O60885-3|BRD4 15.847184025352803 0.36288280428275715 1 NVT{I|L} 4 -1 39.68 0 0 3.6021 0 0 656.3198719709 0 656.3198719709 0 24.195925227640984 0 0 0 0.5 0 0.4247425010840047 0 NVT{I|L} 3.6021 - 140 NaN NaN 109180.7 NaN 16306 3802 20104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20112 82.131 NaN 2795400 35 0 198870 0.327 + 28893 TWFTAGAKLLF 11 112 627.8474905822936 1253.6804282313872 2 627.8474731445312 MULTI HCD FTMS 0 0 0 20111 1385571.375 1 0 0 1 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 166.76915356408847 1.5133472267439584E-08 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F} 11 0 + 102.7 0 0 8.1921 8.1921 89.862 0 0 0 3.845760471140551 65.78204156017637 3.845760471140551 6.575773191777927 0 3.3737125054200234 0 2.731779514783006 0 + + {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGA{I|L}K{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}K{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQA{I|L}K{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGA{I|L}{I|L}K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAQK{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAGA{I|L}K{I|L}{M(Oxidation (M))|F} 8.1921;7.6676;7.5929;7.2505;7.0683;6.9026;6.6513;6.5199;6.3781;6.3034 +;-;-;-;-;-;-;-;-;- + 11373 NaN NaN 519482.8 NaN 16307 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20113 82.135 NaN 1492600 35 0 339710 0.261 -1 SFMIWNTMM 9 106 588.7461832328894 NaN 0 588.7650146484375 PEAK HCD FTMS 0 0 0 20111 47327.671875 1 0 0 2 Oxidation (M) _SFMIWNTMM(Oxidation (M))_ ENST00000507447.1_1_5:54960464-54965471:-|nuORF 14.838274106304384 0.2220448417561729 1 CA{I|L}EVSY 7 -1 38.364 0 0 3.2637 0 0 223.0654182662135 184.03972803287346 407.105146299087 0 0 0 0 0 0 0 0.6549471895720985 0 CA{I|L}EVSY 3.2637 - 1147 + NaN NaN 319314.1 NaN 16308 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20114 82.139 NaN 354510 35 0 42871 0.261 -1 NNCALESETF 10 84 592.7469425886738 1183.4793322441476 2 592.7473754882812 MULTI HCD FTMS 0 0 0 20111 105972.546875 0.7702945231772886 1 -0.02619171142578125 3 Carbamidomethyl (C) _NNC(Carbamidomethyl (C))ALESETF_ ENSG00000114248|ENST00000316428|LRRC31;LRRC31|p.I373S|1|0.1|ENSG00000114248|chr3:169851660-169851660|A/C|missense_variant;nc|ENSG00000114248|Q6UY01-2|LRRC31;nc|ENSG00000114248|Q6UY01-4|LRRC31 12.240655878213236 0.39661705172222156 1 {[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Y{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 58.236 0 0 4.9207 4.9207 89.708 0 0 0 1.3760434043674508 42.77819381628923 1.3760434043674508 25.46720330707273 0 1.9361818737241734 0 0 0 {[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Y{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}ND[HK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y[W{M(Oxidation (M))|F}]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}YYY{NN|[MP]|[D{I|L}]|[EV]};{[ET]|[MV]}ND{I|L}Y{[DS]|[MA]|[CV]|TT}{NN|[MP]|[D{I|L}]|[EV]};{[ET]|[MV]}N[HQ]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y[W{M(Oxidation (M))|F}]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};YY{NN|[MP]|[D{I|L}]|[EV]}[WM]{M(Oxidation (M))|F}{M(Oxidation (M))|F};YY[{M(Oxidation (M))|F}T][C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9207;2.7688;2.0151;1.2778;1.2614;1.2563;1.2325;1.1626;1.0521 -;-;-;-;-;-;-;-;- 364 NaN NaN 138120.8 NaN 16309 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20115 82.142 NaN 176710 35 0 20163 0.261 + 34585 YPNFLVNEL 9 66 554.786956832591 1107.559360731982 2 554.786865234375 MULTI HCD FTMS 0 0 0 20111 64668.73828125 0.5952570782433556 4 -0.114715576171875 4 Unmodified _YPNFLVNEL_ ENSG00000143207|ENST00000367669|COP1;nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1 34.40172386719151 0.0910440009062557 1 VEN{I|L} 4 7 47.053 0 0 4.2483 0 0 634.3116251337402 0 634.3116251337402 0 29.97425010840047 0 0 0 0.805462187404089 0 0.3252574989159953 0.3807196863200844 VEN{I|L} 4.2483 - 156 NaN NaN 105211.3 NaN 16310 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20116 82.146 NaN 167440 35 0 47820 0.261 + 19245 NKRNQCLL 8 39 494.77090307232737 987.5272532114548 2 494.771240234375 MULTI HCD FTMS 0 0 0 20111 71858.0390625 0.633301015882463 3 -0.08519744873046875 5 Unmodified _NKRNQCLL_ ENST00000553932.5_1_14:39308236-39359955:-|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}{I|L} 2 6 25.217 0 0 2.5535 0 0 743.3501926603375 0 743.3501926603375 0 10.612431371158735 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.5535 + + 24 NaN NaN 101712.3 NaN 16311 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20117 82.149 NaN 92681 35 0 5540.9 0.261 + 23927 RTQRAAPL 8 55 456.77215741527823 911.5297618973565 2 456.7725524902344 MULTI HCD FTMS 0 0 0 20111 34964.328125 0.5545574970482745 1 -0.02619171142578125 6 Unmodified _RTQRAAPL_ ENST00000535200.1_1_12:120648776-120650425:+|nuORF 0.7936320650641473 0.540814922690045 1 W 1 8 15.485 0 0 1.6987 0 0 707.4400229830972 0 707.4400229830972 0 8.138181262758266 0 0 0 0 0 0 0 W 1.6987 - 21 + NaN NaN 108274.5 NaN 16312 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20118 82.152 NaN 158420 35 0 12970 0.261 + 34157 YPDEDDFYF 9 62 404.15640888615445 1209.4473972586634 3 404.1576843261719 MULTI HCD FTMS 0 0 0 20111 54486.94140625 1 0 0 7 Unmodified _YPDEDDFYF_ ENSG00000134323|ENST00000281043|MYCN 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.4047 0 0 1044.3683547555368 0 1044.3683547555368 0 0.3072623954359699 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.4047 + + 19 + NaN NaN 99964.5 NaN 16313 3803 20111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20120 82.157 NaN 723650 35 0 127210 0.327 + 2400 DPLGYEIQL 9 69 524.2714734100535 1046.528393886907 2 524.2719116210938 MULTI HCD FTMS 0 0 0 20119 288348.125 0.305748623108294 5 -0.14754486083984375 1 Unmodified _DPLGYEIQL_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 34.40172386719151 0.0910440009062557 1 {I|L}E{I|L}Q{I|L} 5 4 44.553 0 0 4.2572 0 0 432.17109877754064 0 432.17109877754064 0 29.61758134947864 0 0 0 1.3494850021680094 0 0 0 {I|L}E{I|L}Q{I|L} 4.2572 - 228 NaN NaN 186869.6 NaN 16314 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20121 82.162 NaN 613650 35 0 153230 0.261 -1 CWWFCCVF 8 60 604.22935668893 1206.44416044466 2 604.229736328125 MULTI HCD FTMS 0 0 0 20119 291798.34375 0.6496087514015652 -1 0.02619171142578125 2 2 Carbamidomethyl (C) _CWWFC(Carbamidomethyl (C))C(Carbamidomethyl (C))VF_ ENST00000542440.5_1_12:122269651-122270002:+|nuORF 2.8892196856762586 0.5377058178582064 1 VSY{M(Oxidation (M))|F} 4 -1 15.929 0 0 1.3204 0 0 692.2049427716812 0 692.2049427716812 0 4.335616549778649 0 0 0 0.8182503180159344 0 0 0 VSY{M(Oxidation (M))|F} 1.3204 - 17 NaN NaN 174428.7 NaN 16315 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20122 82.165 NaN 249640 35 0 38233 0.262 + 3176 EAVVFEAVL 9 64 488.7711209630706 975.5276889929412 2 488.7713928222656 MULTI HCD FTMS 0 0 0 20119 99282.828125 0.4066117188574866 4 -0.11801910400390625 3 Unmodified _EAVVFEAVL_ BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6 61.357469665136826 0.01568246967499496 1 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L} 9 2 + 53.819 0 0 5.517 5.517 92.054 0 0 0 4.094625129298642 44.86699741209414 4.094625129298642 53.819422339380985 0 2.024227503252014 0 1.394599018282542 0 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L} 5.517 - 215 NaN NaN 113730.2 NaN 16316 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20123 82.168 NaN 316530 35 0 26855 0.261 + 23488 RMCGLMSLI 9 75 512.2614566675062 1022.5083604018124 2 512.2617797851562 MULTI HCD FTMS 0 0 0 20119 45689.72265625 0.27540055693379945 -7 0.19332122802734375 4 Unmodified _RMCGLMSLI_ REV__nc|ENSG00000171931|Q5XX13-2|FBXW10 24.020572477871973 0.15282392193088168 1 NS[DC]D{I|L}{I|L} 7 -1 25.723 0 0 2.5157 0 0 244.17820937324376 0 244.17820937324376 0 9.8130839289297 0 0 0 0.5 0 0 0.3054621874040891 NS[DC]D{I|L}{I|L} 2.5157 - 690 NaN NaN 148222.1 NaN 16317 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20124 82.172 NaN 230450 35 0 15452 0.261 -1 MLLHSLPCF 9 58 538.768235966654 1075.5219190001078 2 539.2684936523438 MULTI HCD FTMS 0 0 0 20119 54326.71484375 0.6934623767947943 -26 0.7350387573242188 5 Oxidation (M) _M(Oxidation (M))LLHSLPCF_ ENSG00000047621|ENST00000261250|C12orf4;ENST00000535030.1_1_12:4643313-4645372:-|nuORF 30.224811164608877 0.11021837014094292 1 PY{I|L}E{I|L}D 6 -1 72.349 0 0 6.7269 0 0 0 342.14609837005827 342.14609837005827 51.11198657781158 0 0 0 0 1.9436726795685342 2 0.3807196863200844 0 PY{I|L}E{I|L}D 6.7269 - 247 + NaN NaN 119647.6 NaN 16318 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20125 82.175 NaN 285410 35 0 38118 0.261 -1 MPVPEILQL 9 60 528.2938187346051 1054.5730845360101 2 528.2936401367188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 13.90604991867851 0.24021115267848145 1 {I|L}{I|L}Q{I|L} 4 -1 25.904 0 0 2.4564 0 0 569.2511463849625 0 569.2511463849625 0 8.914412723804546 0 0 0 0.3252574989159953 0 0 0 {I|L}{I|L}Q{I|L} 2.4564 + + 22 NaN NaN 124302.8 NaN 16319 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20126 82.178 NaN 116480 35 0 10977 0.261 -1 0 51 562.3433286913858 1122.6721044495714 2 562.7678833007812 MULTI HCD FTMS 0 0 0 20119 9216.2470703125 0.06174653997232376 -19 0.5382080078125 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3793 0 0 957.5934891925386 0 957.5934891925386 0 8.406206186877938 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3793 - 37 + NaN NaN 98875.7 NaN 16320 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20127 82.182 NaN 67142 35 0 6578.7 0.263 + 2751 DWRRSGTTCAR 11 37 436.8796627166946 1307.6171587502838 3 436.87939453125 MULTI HCD FTMS 0 0 0 20119 6198.57763671875 0.22637012133167045 -6 0.1571197509765625 8 Unmodified _DWRRSGTTCAR_ REV__ENSG00000213203|ENST00000307194|GIMAP1 0.3666738066901352 0.4173125597497531 1 M 1 -1 3.9794 0 0 0.30432 0 0 540.7070768184464 632.8588350885374 1173.5659119069837 0 0 0 0 0 0 0 0 0 M 0.30432 - 3 + NaN NaN 92338.2 NaN 16321 3804 20119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20129 82.187 NaN 1339200 35 0 190940 0.327 + 27929 TENDIYNFF 9 102 581.75575666065 1161.4969603881 2 581.7561645507812 MULTI HCD FTMS 0 0 0 20128 847140.6875 0.8625398815490074 3 -0.08852386474609375 1 Unmodified _TENDIYNFF_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 114.6490535036381 0.0021834323520089267 1 {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 76.9 0 0 6.6208 6.6208 86.162 0 0 0 3.65279269351241 33.663704707018525 3.65279269351241 4.195443081143537 0 2.4826446478103827 0 1.610924374808178 1.1861818737241734 + + {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DN]ET{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}NVEYN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}ND{I|L}YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DN]{I|L}TEYN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}VNEYN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DN]ET{I|L}YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}NVEYGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DN]{I|L}TEYGG{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6208;6.2596;5.9091;5.828;5.6787;5.6638;5.5002;5.4668;5.1163;4.8859 +;-;-;-;-;-;-;-;-;- + 1948 NaN NaN 294450.6 NaN 16322 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20130 82.191 NaN 1177600 35 0 244200 0.261 + 18356 MPLNVADLI 9 92 501.270536923985 1000.52652091477 2 501.270751953125 MULTI HCD FTMS 0 0 0 20128 636900.875 0.5053499458270998 -5 0.13085174560546875 2 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 78.7280429016045 0.006263961847259105 1 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 68.707 0 0 6.8671 6.8671 92.805 0 0 0 11.896512253176823 40.9209190344287 11.896512253176823 21.97498719580942 0 1.7302046884880937 1 0.3054621874040891 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}A{[CP]|[EA]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}AV{[CP]|[EA]}AD{I|L}{I|L};{[TV]|[{I|L}S]}[QP]{[ES]|[DT]|[{I|L}C]}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[{I|L}P]{[DS]|[MA]|[CV]|TT};{NN|[MP]|[D{I|L}]|[EV]}{I|L}AV[QP][{M(Oxidation (M))|F}V];{[TV]|[{I|L}S]}A{[CP]|[EA]}V[{I|L}P]{[DS]|[MA]|[CV]|TT} 6.8671;4.6707;3.9453;2.2681;2.0908;2.0659;0.31898 -;-;-;-;-;-;- 517 NaN NaN 265446.3 NaN 16323 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20131 82.195 NaN 566850 35 0 62294 0.261 + 17616 LYYDAIWHF 9 77 614.2951260546212 1226.5756991760422 2 614.794677734375 MULTI HCD FTMS 0 0 0 20128 165711.8125 0.009724379699806265 70 -2.0164871215820312 3 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 81.61307344734483 0.005330412723537057 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 67.039 0 0 5.4656 5.4656 83.663 0 0 0 3.278777176623038 3.278777176623038 3.278777176623038 3.278777176623038 0 2.3728473723926466 2 0 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}KH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[Y{I|L}]A{I|L}WH{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]H{I|L}[VS]H{M(Oxidation (M))|F} 5.4656;5.1983;4.1554;4.0036;3.5174;3.4967;3.4234;2.8035;1.8649;1.0306 +;+;-;-;-;-;-;-;-;- + 1081 + NaN NaN 170226.5 NaN 16324 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20132 82.198 NaN 215710 35 0 26980 0.263 + 18169 MPDIDFNL 8 56 482.7259846683227 963.4374164034455 2 482.7259521484375 MULTI HCD FTMS 0 0 0 20128 121557.6171875 0.72229175668597 6 -0.1637420654296875 4 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 34.10243960390752 0.30669083636501265 1 {NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}N{I|L} 8 0 + 43.703 0 0 4.5362 4.5362 86.204 0 0 0 0.45757490560674796 29.72357194224834 0.45757490560674796 9.262137858390808 0 0.75 0 0 0.3807196863200844 + + {NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{NN|[MP]|[D{I|L}]|[EV]}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{NN|[MP]|[D{I|L}]|[EV]}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D[{I|L}P][MN] 4.5362;3.5748;3.2387;2.2773;0.37835 +;-;-;-;- + 67 NaN NaN 130292.2 NaN 16325 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20133 82.201 NaN 662810 35 0 184040 0.261 + 35554 YYHAQCNFF 9 87 596.7474810089391 1191.480409084678 2 596.7471313476562 MULTI HCD FTMS 0 0 0 20128 152050.5625 0.8974878144382191 3 -0.08852386474609375 5 Unmodified _YYHAQCNFF_ ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1 12.531546534597751 0.2520865569484384 1 SYE 3 8 36.114 0 0 3.031 0 0 794.321580955275 0 794.321580955275 0 0.6347743803710344 0 0 0 0.3807196863200844 0 0.8494850021680094 0 SYE 3.031 - 719 NaN NaN 196098.8 NaN 16326 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20134 82.205 NaN 459930 35 0 71107 0.261 -1 CLQCQQAF 8 65 527.7256019989674 1053.4366510647346 2 527.7255859375 MULTI HCD FTMS 0 0 0 20128 71594.4609375 0.40712635532323976 -5 0.13085174560546875 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LQC(Carbamidomethyl (C))QQAF_ ENST00000482803.1_1_3:9799225-9799596:-|nuORF 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6128 0 0 888.3577001143425 0 888.3577001143425 0 0.5360498482393439 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6128 + + 133 + NaN NaN 157423.2 NaN 16327 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20135 82.208 NaN 301860 35 0 67651 0.261 + 33118 YDVSKSSPF 9 70 515.2501063056221 NaN 0 515.2489624023438 PEAK HCD FTMS 0 0 0 20128 44350.671875 0.5686463141222446 2 -0.05902862548828125 7 Unmodified _YDVSKSSPF_ REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF 13.50788311687929 0.22978952576613207 1 SY 2 -1 12.206 0 0 1.1868 0 0 613.3116312130036 162.0559023492797 775.3675335622833 0 0 0 0 0 0 0 0.2742275032520141 0 SY 1.1868 - 129 + NaN NaN 126022.9 NaN 16328 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20136 82.211 NaN 84763 35 0 11346 0.261 + 20533 PDTSRLRL 8 42 479.2773015711186 956.5400502090372 2 479.2776794433594 MULTI HCD FTMS 0 0 0 20128 7285.33740234375 0.05178454187396628 12 -0.3375244140625 8 Unmodified _PDTSRLRL_ ENSG00000148602|ENST00000372105|LRIT1 5.230669730166228 0.5342319408533849 1 T 1 7 4.8464 0 0 0.50666 0 0 643.4130798494654 209.0569246881469 852.4700045376122 0 0 0 0 0 0 0 0.3252574989159953 0 + T 0.50666 + + 12 + NaN NaN 98926.3 NaN 16329 3805 20128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20138 82.216 NaN 1828100 35 0 217680 0.327 + 33492 YICFSLTCI 9 103 560.2641860067814 1118.5138190803627 2 560.2645263671875 MULTI HCD FTMS 0 0 0 20137 988894.6875 0.9951391233025282 2 -0.05901336669921875 1 Carbamidomethyl (C) _YIC(Carbamidomethyl (C))FSLTCI_ REV__ENSG00000153246|ENST00000283243|PLA2R1 50.855029805455786 0.030374663808198754 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C{I|L} 10 -1 + 100.81 0 0 9.0126 9.0126 88.702 0 0 0 16.933115814076345 16.53212513775344 16.53212513775344 1.2751372576825304 0 1.8807196863200843 1.6989700043360187 1.9604093769761874 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{M(Oxidation (M))|F}TS{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YC]|[HE]}{I|L}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{[YC]|[HE]}{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}G{I|L}{[YC]|[HE]}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}G{[YC]|[HE]}{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}G{M(Oxidation (M))|F}TS{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YC]|[HE]}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[YC(Carbamidomethyl (C))]{I|L}C{I|L};[Y{I|L}]ATG{I|L}{[YC]|[HE]}C{I|L} 9.0126;8.8986;8.7776;8.0513;7.7124;7.6452;7.5984;7.5711;7.1229;7.0466 -;-;-;-;-;-;-;-;-;- 4599 NaN NaN 364821.2 NaN 16330 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20139 82.221 NaN 724620 35 0 135030 0.261 + 6471 FPIPEEYTF 9 79 571.7740704404392 1141.5335879476784 2 571.7745361328125 MULTI HCD FTMS 0 0 0 20137 481190.3125 0.9117962221373213 4 -0.10808563232421875 2 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 85.35673624503755 0.00464763827098139 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F} 9 0 + 76.348 0 0 6.6882 6.6882 93.114 0 0 0 22.632192780232785 43.83848349674871 22.632192780232785 30.268024924119672 0 1.9247425010840047 1.6989700043360187 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y{I|L}{[MG]|[TS]}YT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP][YT]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YT{[TV]|[{I|L}S]}YT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[YD]|[{M(Oxidation (M))|F}M]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}P{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}{I|L}{[MG]|[TS]}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}T{[TV]|[{I|L}S]}YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YE[EP]{I|L}P{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}E[EP]{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EP{I|L}[NS] 6.6882;4.0367;4.0154;3.9518;3.8962;3.8824;3.7975;3.5929;3.4386;3.4089 +;-;-;-;-;-;-;-;-;- + 1119 NaN NaN 197910.8 NaN 16331 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20140 82.224 NaN 638410 35 0 52870 0.261 + 13456 KYPENFFLL 9 88 585.8132425088911 1169.6119320845821 2 585.8132934570312 MULTI HCD FTMS 0 0 0 20137 243900.75 0.0012302139930232606 239 -5.781303405761719 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 54.319 0 0 4.6442 4.6442 85.657 0 0 0 7.904849854573683 23.187587626244124 7.904849854573683 9.208187539523749 0 1.9489700043360187 0 0.4247425010840047 0.25 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[CP]|[EA]}QSVE[PG]K{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[EP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SV[TA]K{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}S{[SA]|[TG]}K{I|L}{I|L};{[CP]|[EA]}QSVE[PG]{I|L}K{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}[EP]{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}E{M(Oxidation (M))|F}[NP]K{I|L};{[CP]|[EA]}[WK][YT]{M(Oxidation (M))|F}{I|L}{I|L} 4.6442;3.8569;2.9372;2.8295;2.7249;2.6846;2.3799;2.3158;2.1826;2.1793 +;-;-;-;-;-;-;-;-;- + 1822 NaN NaN 184722.2 NaN 16332 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20141 82.227 NaN 779730 35 0 66898 0.261 + 16339 LRQFRYTF 8 99 565.8082770126997 1129.6020010921993 2 566.800048828125 MULTI HCD FTMS 0 0 0 20137 14065.2353515625 0.612130379154622 -5 0.13750457763671875 4 Unmodified _LRQFRYTF_ ENSG00000143315|ENST00000368090|PIGM 12.531546534597751 0.5015908124873912 1 {M(Oxidation (M))|F}NYT{M(Oxidation (M))|F} 5 4 26.766 0 0 2.3695 0 0 439.29683859395556 0 439.29683859395556 0 6.52704069166866 0 0 0 0 0 0.2302046884880938 0 {M(Oxidation (M))|F}NYT{M(Oxidation (M))|F} 2.3695 - 2511 + NaN NaN 201283.3 NaN 16333 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20142 82.231 NaN 114230 35 0 15530 0.261 + 22869 QYNTYPIKLF 10 54 643.8423577437807 1285.6701625543612 2 643.8427124023438 MULTI HCD FTMS 0 0 0 20137 47510.36328125 0.5741660758672383 3 -0.08853912353515625 5 Unmodified _QYNTYPIKLF_ ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 8.745405648335112 0.42901288225909884 1 T{M(Oxidation (M))|F}[WD] 4 9 24.253 0 0 1.8864 0 0 718.4360829084 0 718.4360829084 0 3.0546218740408904 0 0 0 0.3807196863200844 0 0.4247425010840047 0 T{M(Oxidation (M))|F}[WD] 1.8864 - 28 NaN NaN 97142.8 NaN 16334 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20143 82.234 NaN 95228 35 0 5521.1 0.262 -1 0 55 553.8298338500571 1105.645114766914 2 553.8298950195312 MULTI HCD FTMS 0 0 0 20137 88239.421875 0.22610147600146374 -18 0.511871337890625 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4005 0 0 940.5660417462094 0 940.5660417462094 0 0.7082530717588753 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4005 - 58 + NaN NaN 94595.7 NaN 16335 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20144 82.237 NaN 156650 35 0 29180 0.261 -1 0 47 515.338779267704 514.331502801104 1 515.3390502929688 MULTI HCD FTMS 0 0 0 20137 47849.80078125 0.8026348490935232 3 -0.08853912353515625 7 NaN NaN 1 SY{M(Oxidation (M))|F} 3 -1 18.962 0 0 3.6867 0 0 99.15854245129772 0 99.15854245129772 0 18.684510786923685 0 0 0 0 0 0 0 SY{M(Oxidation (M))|F} 3.6867 - 9 + NaN NaN 107413.8 NaN 16336 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20145 82.241 NaN 110990 35 0 8165.2 0.261 + 32750 WRDRHQLIF 9 56 635.8448407997159 1269.6751286662318 2 635.845947265625 MULTI HCD FTMS 0 0 0 20137 27490.421875 0.3541710114702815 6 -0.16374969482421875 8 Unmodified _WRDRHQLIF_ REV__ENST00000496384.6_2_7:140420633-140420807:-|nuORF 19.256988751693697 0.19398022840297344 1 T[DG]{I|L}{M(Oxidation (M))|F} 5 -1 18.091 0 0 1.4248 0 0 718.4388294904312 0 718.4388294904312 0 7.121440527729419 0 0 0 0.3807196863200844 0 0.6747425010840047 0 T[DG]{I|L}{M(Oxidation (M))|F} 1.4248 - 31 NaN NaN 114477.4 NaN 16337 3806 20137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20147 82.246 NaN 2960500 35 0 678030 0.327 + 35347 YYALEVSYF 9 83 577.7736665699496 1153.532780206699 2 577.7743530273438 MULTI HCD FTMS 0 0 0 20146 1370881.375 0.3123490452878092 4 -0.10471343994140625 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 112.59319219568356 0.00251905749371435 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F} 9 2 + 89.179 0 0 7.731 7.731 88.777 0 0 0 5.7783248807594845 9.035984316004217 5.7783248807594845 5.7783248807594845 0 2.774227503252014 0 1.4604093769761874 0 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};YYA{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}TVDY{M(Oxidation (M))|F};YYA{I|L}TVDY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V[YV]VDY{M(Oxidation (M))|F};[RP]{[CP]|[EA]}{[RE]|[WV]}SY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{I|L}[MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}V][MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}M[R{I|L}]N[HS]{M(Oxidation (M))|F} 7.731;7.23;5.2066;4.7057;3.2036;3.1792;2.5268;2.4123;1.5061 -;+;-;-;-;-;-;-;- + 1400 NaN NaN 378550.3 NaN 16338 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20148 82.25 NaN 3560200 35 0 425300 0.261 + 17890 MILELDPTF 9 88 547.7753373336277 1093.5361217340553 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20146 2177535.75 0.42742757209029164 -8 0.22603607177734375 2 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 108.9 0 0 9.9583 9.9583 95.646 0 0 0 19.63513220666796 39.01043852362646 19.63513220666796 13.226576900918644 0 2.9674165578762484 2 1.363982988912431 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}AE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}D[{M(Oxidation (M))|F}T]P;{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA{I|L}E{I|L}YP 9.9583;8.7488;7.2113;7.1641;6.7575;6.0018;5.9545;5.9108;5.548;5.4926 +;-;-;-;-;-;-;-;-;- + 1959 NaN NaN 625777.4 NaN 16339 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20149 82.254 NaN 935890 35 0 123360 0.261 + 6877 FPTVVIYVM 9 76 542.7909082805446 1083.5672636278891 2 542.7913818359375 MULTI HCD FTMS 0 0 0 20146 184386.453125 0.38096219649932983 1 -0.0294952392578125 3 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 81.86404211737425 0.005249203329642222 1 {[TV]|[{I|L}S]}P{M(Oxidation (M))|F}[{I|L}V]YV{M(Oxidation (M))|F} 9 4 + 61.291 0 0 5.6564 5.6564 86.031 0 0 0 7.9851014694977 11.505149978319906 7.9851014694977 7.9851014694977 0 1.9247425010840047 0 1.9604093769761874 0 {[TV]|[{I|L}S]}P{M(Oxidation (M))|F}[{I|L}V]YV{M(Oxidation (M))|F};[Y{I|L}]AP[{I|L}V]YV{M(Oxidation (M))|F} 5.6564;4.9195 -;- 397 NaN NaN 229791.4 NaN 16340 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20150 82.257 NaN 853200 35 0 32623 0.261 + 23878 RSSINDKII 9 101 523.3036148573681 1044.592676781536 2 523.3037109375 MULTI HCD FTMS 0 0 0 20146 514119.6875 0.2604214286564547 -22 0.6267318725585938 4 Unmodified _RSSINDKII_ ENSG00000072310|ENST00000261646|SREBF1;ENSG00000198911|ENST00000361204|SREBF2;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;SREBF2|p.R341Q|1|0.18|ENSG00000198911|chr22:41873952-41873952|G/A|missense_variant 4.3292370932331545 0.3181982124262546 1 N 1 8 7.7866 0 0 0.74542 0 0 62.03681517139484 865.4657791955414 927.5025943669363 0 0 0 0 0 0.3807196863200844 0 0 0 + N 0.74542 + + 108 + NaN NaN 221069.8 NaN 16341 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20151 82.26 NaN 1202100 35 0 166300 0.261 + 32200 VYTFQFQDF 9 95 597.7771247189748 1193.5396965047496 2 597.7772216796875 MULTI HCD FTMS 0 0 0 20146 447474.96875 0.4286027075437638 -3 0.08852386474609375 5 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 168.5375213894962 4.622051367253751E-09 1 [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 0 + 97.604 0 0 8.1777 8.1777 86.925 0 0 0 0.25621490810046055 3.323872065994564 0.25621490810046055 0.25621490810046055 0 2.6549471895720984 1 1.6989700043360187 0.3252574989159953 + + [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CA]|SS}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8.1777;8.1562;7.4062;7.4062;7.3847;7.3847;6.3658;6.3444;5.9137;5.7438 +;-;-;-;-;-;-;-;-;- + 5673 NaN NaN 271368.5 NaN 16342 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20152 82.264 NaN 194300 35 0 24878 0.262 + 266 AFLCRFIF 8 51 508.7740106015285 1015.533468269857 2 508.78851318359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _AFLCRFIF_ ENST00000474436.1_1_9:35089091-35089349:-|nuORF 9.347437153973935 0.5250182646323369 1 {M(Oxidation (M))|F} 1 7 21.237 0 0 2.0912 0 0 850.4546851661446 0 850.4546851661446 0 6.460828060918828 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 2.0912 + + 15 + NaN NaN 125134.8 NaN 16343 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20153 82.267 NaN 660890 35 0 68347 0.261 + -1 MEHEPCTPF 9 78 574.2311912801802 1146.4478296271602 2 574.231689453125 MULTI HCD FTMS 0 0 0 20146 117123.7109375 0.3306473746327154 -10 0.2818450927734375 7 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 11.640296217721598 0.25978676193971967 1 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DPT{M(Oxidation (M))|F} 8 -1 49.448 0 0 4.3132 0 0 165.97645666822513 0 165.97645666822513 0 34.49986893552975 0 0 0 1.274227503252014 0 0.6109243748081782 0.3252574989159953 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DPT{M(Oxidation (M))|F} 4.3132 - 939 + NaN NaN 182015.3 NaN 16344 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20154 82.27 NaN 270120 35 0 32997 0.261 + 32293 VYTVVPSWDF 10 55 606.8006499227157 1211.5867469122313 2 606.8004760742188 MULTI HCD FTMS 0 0 0 20146 101158.21875 0.6570818885306732 11 -0.30132293701171875 8 Unmodified _VYTVVPSWDF_ REV__ENSG00000166741|ENST00000299964|NNMT;REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF 17.11289562659939 0.35104376501799556 1 [Y{I|L}]SVV 5 -1 35.546 0 0 2.9339 0 0 0 647.2471222386563 647.2471222386563 17.587418566968154 0 0 0 0 0.5 2 0 0 [Y{I|L}]SVV 2.9339 - 119 NaN NaN 128857.8 NaN 16345 3807 20146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20156 82.275 NaN 1288600 35 0 114050 0.327 + 28894 TWFTAGAKLLF 11 91 627.8474905822936 1253.6804282313872 2 627.8477783203125 MULTI HCD FTMS 0 0 0 20155 668143 0.4822147830529481 5 -0.1375732421875 1 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 154.7525637096362 4.1849493340204536E-05 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F} 11 0 + 115.66 0 0 9.2253 9.2253 92.121 0 0 0 3.2210667880990655 67.62315841205546 3.2210667880990655 8.551985655421362 0 3.579689690656103 0 2.7700213798351423 0 + + {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGA{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQA{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}[QA]TK{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}K[HV]GAAAD{I|L}{M(Oxidation (M))|F};{I|L}{I|L}K[HV]QAAD{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}[QA]KT{I|L}{I|L}{M(Oxidation (M))|F} 9.2253;8.5432;8.2837;6.985;6.3028;6.0434;5.6706;5.3994;4.5683;4.5341 +;-;-;-;-;-;-;-;-;- + 3884 NaN NaN 276491.1 NaN 16346 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20157 82.28 NaN 594030 35 0 117410 0.261 + 11324 IYMDTLNIF 9 72 573.2809682998818 1144.5473836665635 2 573.28125 MULTI HCD FTMS 0 0 0 20155 288289.34375 0.3688276280399639 12 -0.33536529541015625 2 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 96.11092074494114 0.00436583732602279 1 {I|L}NC(Carbamidomethyl (C))S{I|L}N{I|L}{M(Oxidation (M))|F} 8 4 75.694 0 0 6.6134 0 0 165.07904103432753 0 165.07904103432753 0 62.19904731848281 0 0 0 0.5 0 0.6747425010840047 1.4049471895720984 {I|L}NC(Carbamidomethyl (C))S{I|L}N{I|L}{M(Oxidation (M))|F} 6.6134 - 831 + NaN NaN 171534.1 NaN 16347 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20158 82.283 NaN 694750 35 0 64311 0.261 + 32146 VYSLQQFGF 9 105 544.774382308405 1087.53421168361 2 544.7745361328125 MULTI HCD FTMS 0 0 0 20155 351863.65625 0.732836112516229 3 -0.07521820068359375 3 Unmodified _VYSLQQFGF_ ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L 85.64151623876279 0.004640175941193596 1 QW{[WT]|[RM]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 7 6 57.974 0 0 5.3308 0 0 117.07947701530914 0 117.07947701530914 0 34.469325423318445 0 0 0 1.863364334130467 0 0.7614393726401688 0 QW{[WT]|[RM]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 5.3308 - 1332 + NaN NaN 185935.5 NaN 16348 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20159 82.286 NaN 815890 35 0 109020 0.261 + 34857 YSCCLFFFF 9 106 588.7461832328894 NaN 0 588.7650146484375 PEAK HCD FTMS 0 0 0 20155 8386.83984375 0.17720795279981222 4 -0.104736328125 4 Unmodified _YSCCLFFFF_ ENST00000292114.7_1_17:26689075-26689240:+|nuORF 12.531546534597751 0.23452071659215576 1 YA{I|L}EVSY 7 7 25.945 0 0 2.2072 0 0 163.02612055034848 184.0406435602172 347.0667641105657 0 0 0 0 0 0 0 0.5010912013506126 0 YA{I|L}EVSY 2.2072 - 1910 + NaN NaN 205299.5 NaN 16349 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20160 82.29 NaN 445820 35 0 25021 0.261 -1 0 84 531.8170281056758 1061.6195032781516 2 531.8171997070312 MULTI HCD FTMS 0 0 0 20155 281029.15625 0.2740086103878709 -15 0.42278289794921875 5 NaN NaN 1 D 1 -1 10.599 0 0 0.99838 0 0 61.05359856270724 882.494486533846 943.5480850965533 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.99838 - 45 + NaN NaN 151375.3 NaN 16350 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20161 82.293 NaN 204070 35 0 12052 0.261 -1 0 72 508.7883285929218 1015.5621042526436 2 509.8036804199219 MULTI HCD FTMS 0 0 0 20155 16179.22265625 0.7594035961965291 -4 0.11801910400390625 6 NaN NaN 1 SV{[RE]|[WV]}VP{[TV]|[{I|L}S]} 8 -1 19.87 0 0 1.9566 0 0 130.09411980099406 0 130.09411980099406 0 6.375175252488251 0 0 0 0.3494850021680094 0 0.6989700043360187 0 SV{[RE]|[WV]}VP{[TV]|[{I|L}S]} 1.9566 - 54 + NaN NaN 123059.7 NaN 16351 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20162 82.296 NaN 254900 35 0 19728 0.261 + 7242 FSVAPFDQNL 10 71 569.2824977035177 1136.5504424738353 2 569.28271484375 MULTI HCD FTMS 0 0 0 20155 70532.484375 0.505971287024283 5 -0.1375732421875 7 Unmodified _FSVAPFDQNL_ ENSG00000090686|ENST00000308271|USP48;ENST00000464577.1_1_1:22013654-22030763:-|nuORF;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-6|USP48;nc|ENSG00000090686|Q86UV5-8|USP48 27.628801355627647 0.2527626205058048 1 E{I|L}QN{I|L} 5 7 46.529 0 0 4.0939 0 0 521.2304698133772 0 521.2304698133772 0 31.04425638516595 0 0 0 1.1747425010840047 0 0.3494850021680094 0.3494850021680094 E{I|L}QN{I|L} 4.0939 - 381 NaN NaN 125941.9 NaN 16352 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20163 82.3 NaN 462150 35 0 86914 0.261 + 19893 NYFDEQFEF 9 63 619.7537661407403 1237.4929793482804 2 619.7539672851562 MULTI HCD FTMS 0 0 0 20155 252944.09375 0.5475645580320769 -5 0.1442108154296875 8 Unmodified _NYFDEQFEF_ ENSG00000162639|ENST00000651461|HENMT1 81.9152076656658 0.005232646987511684 1 {M(Oxidation (M))|F}[YN]DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 2 + 77.884 0 0 6.2937 6.2937 84.118 0 0 0 63.1914468044949 0.1440027962519963 0.1440027962519963 1.249387366082999 0 2.774227503252014 0 1.7059771852360797 0.5 {M(Oxidation (M))|F}[YN]DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YN]DEQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DEQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YN]DE[AG]{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DE[AG]{M(Oxidation (M))|F}E{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YN]DE[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DE[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[YN]E 6.2937;6.1927;5.2825;5.1815;5.1456;4.6406;4.1344;3.6294;3.2196;2.6124 -;+;-;-;-;-;-;-;-;- + 460 + NaN NaN 150386 NaN 16353 3808 20155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20165 82.305 NaN 675630 35 0 103820 0.327 + 3932 EPVQYYFTL 9 77 580.286724707864 1158.5588964825279 2 580.287109375 MULTI HCD FTMS 0 0 0 20164 388231.5 0.9114681866744103 -1 0.0295257568359375 1 Unmodified _EPVQYYFTL_ ENSG00000066136|ENST00000447388|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952|NFYC 99.75527289724121 0.004270341300239591 1 {[QV]|[N{I|L}]|[RA]|[KV]}PEYY{M(Oxidation (M))|F}T{I|L} 9 4 + 76.355 0 0 6.5905 6.5905 92.686 0 0 0 5.6424927368725974 15.006309713918782 5.6424927368725974 26.238350322034236 0 1.8494850021680094 0 2.1307196863200843 0 {[QV]|[N{I|L}]|[RA]|[KV]}PEYY{M(Oxidation (M))|F}T{I|L};[{I|L}T]{M(Oxidation (M))|F}YYQ[DP]{I|L};[{I|L}T]{M(Oxidation (M))|F}YYQV[EP];[{I|L}T]Y{M(Oxidation (M))|F}YQ[DP]{I|L};[{I|L}T]Y{M(Oxidation (M))|F}YQV[EP];[YT]{I|L}{M(Oxidation (M))|F}YQ[DP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}PEA[VG][MD]T{I|L};[{M(Oxidation (M))|F}T]{I|L}YYQ[DP]{I|L};[YT]{I|L}{M(Oxidation (M))|F}YQV[EP];[{I|L}T]{M(Oxidation (M))|F}YY[AG][DP]{I|L} 6.5905;4.3257;4.0279;3.8561;3.5583;3.5126;3.2943;3.2711;3.2148;3.2023 -;-;-;-;-;-;-;-;-;- 814 NaN NaN 184143.8 NaN 16354 3809 20164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20166 82.309 NaN 337330 35 0 66211 0.261 + -1 TPSHCSPCDF 10 59 604.22935668893 1206.44416044466 2 604.2293701171875 MULTI HCD FTMS 0 0 0 20164 79260.875 0.1764525369885535 4 -0.1080474853515625 2 2 Carbamidomethyl (C) _TPSHC(Carbamidomethyl (C))SPC(Carbamidomethyl (C))DF_ REV__ENST00000531006.1_1_8:144698411-144698636:-|nuORF 1.4819007175156935 0.4674597685733628 1 CDQ{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 -1 31.979 0 0 2.6507 0 0 61.01359275624038 0 61.01359275624038 0 21.97411904393022 0 0 0 0.1549471895720985 0 0 0.3252574989159953 CDQ{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 2.6507 - 155 + NaN NaN 136844.4 NaN 16355 3809 20164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20167 82.313 NaN 755410 35 0 72546 0.261 + 16340 LRQFRYTF 8 93 565.8082770126997 1129.6020010921993 2 566.2974243164062 MULTI HCD FTMS 0 0 0 20164 21820.087890625 0.46820596480087545 1 -0.0195465087890625 3 Unmodified _LRQFRYTF_ ENSG00000143315|ENST00000368090|PIGM 9.347437153973935 0.5250182646323369 1 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 8 6 26.234 0 0 2.3224 0 0 164.10129242452996 0 164.10129242452996 0 10.035918783769088 0 0 0 0 0 0.6307196863200843 0.2302046884880938 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 2.3224 - 1234 + NaN NaN 202452.6 NaN 16356 3809 20164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20168 82.316 NaN 163110 35 0 16734 0.261 + 24997 RYVPGLLLSYL 11 48 647.3816678290327 1292.7487827248654 2 647.8839721679688 MULTI HCD FTMS 0 0 0 20164 29761.580078125 0.289674487850914 6 -0.16371917724609375 4 Unmodified _RYVPGLLLSYL_ ENSG00000141699|ENST00000309428|RETREG3 33.4449034751529 0.1791669456720762 1 G{I|L}{I|L}S[Y{I|L}] 6 5 36.643 0 0 2.8345 0 0 628.3700758526284 0 628.3700758526284 0 29.653500133247732 0 0 0 1.6989700043360187 0 0.4247425010840047 0 G{I|L}{I|L}S[Y{I|L}] 2.8345 - 29 NaN NaN 115236.2 NaN 16357 3809 20164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20169 82.319 NaN 142650 35 0 28043 0.264 -1 0 40 416.18136677364834 415.17409030704835 1 416.1812744140625 MULTI HCD FTMS 0 0 0 20164 24005.1875 0.1451004107362056 6 -0.16371917724609375 5 NaN NaN 1 G{M(Oxidation (M))|F} 2 -1 19.693 0 0 4.7432 0 0 193.07370075802334 0 193.07370075802334 0 19.69273760456403 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 4.7432 - 6 + NaN NaN 103155.5 NaN 16358 3809 20164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20171 82.324 NaN 1687100 35 0 354390 0.327 + 18357 MPLNVADLI 9 99 501.270536923985 1000.52652091477 2 501.270751953125 MULTI HCD FTMS 0 0 0 20170 1260316.5 1 0 0 1 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 88.95385435242217 0.004553379958619559 1 DAVN[EP]{I|L} 7 7 66.745 0 0 6.671 0 0 244.178514549025 0 244.178514549025 0 36.277587793350534 0 0 0 2.1747425010840047 0 1.805462187404089 0.4247425010840047 DAVN[EP]{I|L} 6.671 - 769 NaN NaN 339310.7 NaN 16359 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20172 82.329 NaN 1293800 35 0 331130 0.261 + 31452 VYDPLFSQL 9 62 541.2820775152878 1080.5496020973756 2 541.2822265625 MULTI HCD FTMS 0 0 0 20170 598927.9375 0.7790995861754973 -3 0.0785675048828125 2 Unmodified _VYDPLFSQL_ ENSG00000100104|ENST00000215917|SRRD 93.16586880292088 0.00444300900000894 1 [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L} 9 0 + 83.628 0 0 7.7394 7.7394 92.936 0 0 0 4.110892374447829 4.110892374447829 4.110892374447829 13.319079913971578 0 2.774227503252014 1.5228787452803376 1.110924374808178 0.6694451763165201 + + [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L};[YV]DP{I|L}{M(Oxidation (M))|F}S[AG]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VP{I|L}{M(Oxidation (M))|F}SQ{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[NV]|[RG]}SQ{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VP{I|L}{M(Oxidation (M))|F}S[AG]{I|L};{[QS]|[NT]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L};[VP]DY{I|L}{M(Oxidation (M))|F}SQ{I|L};[VP]DY{I|L}{M(Oxidation (M))|F}S[AG]{I|L};[YV]DP{I|L}{[NV]|[RG]}[YV];[Q{I|L}]S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L} 7.7394;6.5068;5.115;4.2647;4.2628;3.9597;3.8861;3.0339;2.8248;2.7186 +;-;-;-;-;-;-;-;-;- + 280 + NaN NaN 277064 NaN 16360 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20173 82.332 NaN 386260 35 0 32037 0.261 + 23489 RMCGLMSLI 9 88 512.2614566675062 1022.5083604018124 2 512.2617797851562 MULTI HCD FTMS 0 0 0 20170 143980.609375 0.8678612542227523 -1 0.0195465087890625 3 Unmodified _RMCGLMSLI_ REV__nc|ENSG00000171931|Q5XX13-2|FBXW10 18.1463463914782 0.20357593197100715 1 DAVN{I|L}PE 7 -1 48.013 0 0 4.6956 0 0 266.15999037910314 0 266.15999037910314 0 19.82525106090371 0 0 0 1.610924374808178 0 0 0 DAVN{I|L}PE 4.6956 - 1411 NaN NaN 153363 NaN 16361 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20174 82.335 NaN 117370 35 0 20259 0.261 + -1 FCSDSTDALCE 11 40 624.2328839290516 1246.451214924903 2 624.2335815429688 MULTI HCD FTMS 0 0 0 20170 46034.14453125 0.7893947623896339 1 -0.02614593505859375 4 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SDSTDALCE_ REV__ENSG00000164938|ENST00000342697|TP53INP1;REV__nc|ENSG00000164938|Q96A56-2|TP53INP1 1.1933415558491238 0.4136870758253112 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.56077 0 0 196.89777264115497 899.4634802955972 1096.3612529367522 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.56077 + + 5 + NaN NaN 115689.5 NaN 16362 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20175 82.339 NaN 95810 35 0 16676 0.261 + 30250 VKCGYFYLEF 10 35 634.8056704536384 1267.5967879740767 2 634.8057250976562 MULTI HCD FTMS 0 0 0 20170 32169.921875 0.5196678063538105 -5 0.13759613037109375 5 Unmodified _VKCGYFYLEF_ ENSG00000253719|ENST00000519948|ATXN7L3B 12.240655878213236 0.39661705172222156 1 {I|L}E{M(Oxidation (M))|F} 3 7 35.445 0 0 2.7963 0 0 860.394823142775 0 860.394823142775 0 33.85151878060192 0 0 0 0.9247425010840047 0 0 0 + {I|L}E{M(Oxidation (M))|F} 2.7963 + + 10 NaN NaN 123255.7 NaN 16363 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20176 82.342 NaN 130450 35 0 17533 0.263 + 10205 IGEGEFLVL 9 55 488.7711209630706 975.5276889929412 2 488.7718811035156 MULTI HCD FTMS 0 0 0 20170 45280.37109375 0.18544525643199727 10 -0.28629302978515625 6 Unmodified _IGEGEFLVL_ ENSG00000125841|ENST00000382285|NRSN2 16.942295170755138 0.21397866736869717 1 AV{I|L} 3 7 29.693 0 0 3.0438 0 0 674.3288534241759 0 674.3288534241759 0 19.235162698957282 0 0 0 0.5 0 0 0 AV{I|L} 3.0438 - 41 NaN NaN 110722.2 NaN 16364 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20177 82.345 NaN 75138 35 0 9623 0.261 + -1 SSCDPDCCC 9 32 495.1263335337082 NaN 0 494.77105712890625 PEAK HCD FTMS 0 0 0 20170 32249.044921875 0.8031664822941589 -4 0.10808563232421875 7 Carbamidomethyl (C) _SSC(Carbamidomethyl (C))DPDCCC_ REV__ENSG00000204852|ENST00000397659|TCTN1;REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF;REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF;REV__ENST00000495659.6_1_12:111052207-111085694:+|nuORF;REV__nc|ENSG00000204852|Q2MV58-3|TCTN1;REV__nc|ENSG00000204852|Q2MV58-4|TCTN1;REV__nc|ENSG00000204852|Q2MV58-5|TCTN1;REV__nc|ENSG00000204852|Q2MV58|TCTN1 0 0.29524684227089293 1 A 1 -1 3.9794 0 0 0.40268 0 0 730.1879565187852 183.98728357486564 914.1752400936508 0 0 0 0 0 0 0 0 0 A 0.40268 - 2 + NaN NaN 100072.7 NaN 16365 3810 20170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20179 82.35 NaN 1019900 35 0 81294 0.327 + 34599 YPNSWFRF 8 82 558.7666469777563 1115.5187410223125 2 558.7670288085938 MULTI HCD FTMS 0 0 0 20178 534013 0.7964440533578425 -6 0.1637420654296875 1 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 24.67388899826682 0.4122521268485776 1 {I|L}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 8 -1 75.989 0 0 6.812 0 0 147.051041902975 0 147.051041902975 0 38.8173216579504 0 0 0 2.610924374808178 0 1.8979400086720375 0 {I|L}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 6.812 - 2218 + NaN NaN 231399.5 NaN 16366 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20180 82.355 NaN 610290 35 0 68376 0.261 + 15150 LMSLIINTF 9 90 534.2939096770834 1066.5732664209668 2 534.2944946289062 MULTI HCD FTMS 0 0 0 20178 275611.4375 0.08031687641513097 -12 0.33074951171875 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 134.295615338601 0.00034446139420701925 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 84.056 0 0 7.8809 7.8809 92.78 0 0 0 5.6424927368725974 47.10052688557289 5.6424927368725974 12.09544243948811 0 2.774227503252014 0 1.5044321917401078 0.28872548999643577 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F} 7.8809;6.7469;4.7458;4.622;3.0996;3.0368;2.5388;2.476 +;-;-;-;-;-;-;- + 1636 NaN NaN 176208.2 NaN 16367 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20181 82.358 NaN 174000 35 0 22864 0.261 -1 YVINTCGQDF 10 54 608.7675991517208 1215.5206453702415 2 608.7683715820312 MULTI HCD FTMS 0 0 0 20178 113131.1015625 0.8411392616822018 1 -0.02951812744140625 3 Carbamidomethyl (C) _YVINTC(Carbamidomethyl (C))GQDF_ ENSG00000111846|ENST00000495262|GCNT2;ENST00000459872.1_1_6:10557103-10619499:+|nuORF;ENST00000474983.5_1_6:10529144-10530083:+|nuORF;GCNT2|p.P196S|1|0.53|ENSG00000111846|chr6:10529497-10529497|C/T|missense_variant;nc|ENSG00000111846|Q8N0V5-2|GCNT2;nc|ENSG00000111846|Q8N0V5-3|GCNT2 34.40172386719151 0.19398797222092762 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 6 -1 54.544 0 0 4.4873 0 0 430.1463795392594 0 430.1463795392594 0 35.08024070117017 0 0 0 0.75 0 0.9247425010840047 0.3807196863200844 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.4873 - 90 NaN NaN 112354.2 NaN 16368 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20182 82.362 NaN 152780 35 0 24483 0.261 + 34101 YNLWKEFRS 9 59 621.8170285860915 1241.619504238983 2 622.31640625 MULTI HCD FTMS 0 0 0 20178 60981.06640625 0.16157478718622134 81 -2.0568161010742188 4 Unmodified _YNLWKEFRS_ ENSG00000101670|ENST00000261292|LIPG 7.910154910731844 0.2910521888787154 1 [YN]{I|L} 3 6 30.7 0 0 2.4726 0 0 0 848.4063444091579 848.4063444091579 20.24227503252014 0 0 0 0 0 1.6989700043360187 0 0.3252574989159953 + [YN]{I|L} 2.4726 + + 63 NaN NaN 109649.4 NaN 16369 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20183 82.365 NaN 138880 35 0 16301 0.261 + 30251 VKCGYFYLEF 10 47 634.8056704536384 1267.5967879740767 2 635.308349609375 MULTI HCD FTMS 0 0 0 20178 19089.75 0.4333239166715878 2 -0.06235504150390625 5 Unmodified _VKCGYFYLEF_ ENSG00000253719|ENST00000519948|ATXN7L3B 12.240655878213236 0.39661705172222156 1 {I|L}E{M(Oxidation (M))|F} 3 7 35.445 0 0 2.7963 0 0 860.3899132873648 0 860.3899132873648 0 31.95046257204389 0 0 0 0.9247425010840047 0 0 0 + {I|L}E{M(Oxidation (M))|F} 2.7963 + + 14 NaN NaN 108379 NaN 16370 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20184 82.368 NaN 78615 35 0 6832.8 0.264 + 18170 MPDIDFNL 8 33 482.7259846683227 963.4374164034455 2 482.72625732421875 MULTI HCD FTMS 0 0 0 20178 44610.5 0.2650742681302978 12 -0.3380584716796875 6 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 7.289230182591677 0.5311777711368266 1 D{M(Oxidation (M))|F}N{I|L} 4 4 28.443 0 0 2.9523 0 0 456.20369155097814 0 456.20369155097814 0 27.95880017344075 0 0 0 0 0 0 0 + D{M(Oxidation (M))|F}N{I|L} 2.9523 + + 25 NaN NaN 93088.5 NaN 16371 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20185 82.372 NaN 60445 35 0 10309 0.261 -1 0 34 456.77215741527823 911.5297618973565 2 456.7720642089844 MULTI HCD FTMS 0 0 0 20178 6487.828125 0.10290126878505261 9 -0.2601470947265625 7 NaN NaN 1 D 1 -1 6.9897 0 0 0.76681 0 0 616.4135337252847 177.06702600650627 793.4805597317909 0 0 0 0 0 0 0 0 0 D 0.76681 - 3 + NaN NaN 88791.5 NaN 16372 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20186 82.375 NaN 46022 35 0 4735.9 0.261 + 4049 ESFYEFFITP 10 28 640.29736328125 NaN 0 640.29736328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ESFYEFFITP_ ENSG00000145623|ENST00000274276|OSMR 1.6526216038709556 0.33876987398426067 1 NC 2 10 4.6927 0 0 0.36703 0 0 656.3310538068375 402.1665133111938 1058.4975671180314 0 0 0 0 0 0 0 0 0 NC 0.36703 - 5 + NaN NaN 86564.4 NaN 16373 3811 20178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20188 82.38 NaN 442800 35 0 42865 0.327 + 13457 KYPENFFLL 9 77 585.8132425088911 1169.6119320845821 2 585.8132934570312 MULTI HCD FTMS 0 0 0 20187 273222.9375 0.0013781125352317273 245 -5.9217071533203125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 53.5 0 0 4.5742 4.5742 85.538 0 0 0 2.3367404008160264 24.810742312574718 2.3367404008160264 9.208187539523749 0 2.079689690656103 0 0 0.6382104921644451 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]{M(Oxidation (M))|F}[NS]V[TA]K{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}[NS]V[TA]{I|L}K;[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[TV]|[{I|L}S]}EV{[RE]|[WV]}K;[{M(Oxidation (M))|F}V][YT]EV{[RE]|[WV]}K 4.5742;3.7869;3.3308;2.5435;2.3863;2.3667;1.6795;1.5794;0.63212;0.56442 +;-;-;-;-;-;-;-;-;- + 460 NaN NaN 146803.1 NaN 16374 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20189 82.384 NaN 369190 35 0 55163 0.261 + 33490 YIAWVMLTKC 10 74 614.3145113787824 NaN 0 614.295654296875 PEAK HCD FTMS 0 0 0 20187 14982.64453125 0.8181106159552982 -2 0.0556640625 2 Unmodified _YIAWVMLTKC_ ENST00000467707.1_1_9:128116999-128121864:+|nuORF 11.494710602746466 0.33034640988000663 1 YD 2 9 12.351 0 0 1.0069 0 0 276.1863045361833 669.3183420780509 945.5046466142342 0 0 0 0 0 0 0 0.28872548999643577 0 YD 1.0069 - 416 + NaN NaN 140430.2 NaN 16375 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20190 82.388 NaN 529380 35 0 80460 0.262 + -1 DICEDLSLM 9 67 527.7256019989674 1053.4366510647346 2 527.7256469726562 MULTI HCD FTMS 0 0 0 20187 123929.578125 0.7047332544737474 2 -0.0623626708984375 3 Oxidation (M) _DICEDLSLM(Oxidation (M))_ REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1 4.75600775471527 0.31496297302216103 1 VY[TP]YV{M(Oxidation (M))|F} 7 -1 43.034 0 0 4.0851 0 0 166.0311779424515 0 166.0311779424515 0 20.074703959221836 0 0 0 0 0 0.9802046884880937 0 VY[TP]YV{M(Oxidation (M))|F} 4.0851 - 170 + NaN NaN 163840.7 NaN 16376 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20191 82.391 NaN 244310 35 0 29494 0.261 + 31564 VYHHHHHH 8 72 552.2572769307284 NaN 0 552.2732543945312 PEAK HCD FTMS 0 0 0 20187 20924.228515625 0.7489254108192869 1 -0.0328369140625 4 Unmodified _VYHHHHHH_ ENSG00000078399|ENST00000343483|HOXA9;ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H 6.354104778181461 0.38822285293237185 1 S 1 8 7.2185 0 0 0.65474 0 0 244.10529985579416 768.3528536432249 1012.4581534990191 0 0 0 0 0 0 0 0.5 0 S 0.65474 - 111 + NaN NaN 131270.7 NaN 16377 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20192 82.395 NaN 532810 35 0 114700 0.261 + 22921 QYSPLLAAF 9 57 505.27124426423137 1008.5279355952628 2 505.2709655761719 MULTI HCD FTMS 0 0 0 20187 148851.265625 0.16433894813065 -5 0.1342315673828125 5 Unmodified _QYSPLLAAF_ ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1 58.678817012210395 0.019429721296335044 1 {I|L}AA{M(Oxidation (M))|F} 4 5 49.553 0 0 4.9134 0 0 588.2922230451187 0 588.2922230451187 0 47.562893943202624 0 0 0 1.7614393726401687 0 0 0 + {I|L}AA{M(Oxidation (M))|F} 4.9134 + + 33 NaN NaN 175640.2 NaN 16378 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20193 82.398 NaN 246380 35 0 38107 0.261 + 17246 LYPFLGIRF 9 49 563.326310441789 1124.638067950378 2 563.3262329101562 MULTI HCD FTMS 0 0 0 20187 48961.875 0.2780776263212317 -6 0.16374969482421875 6 Unmodified _LYPFLGIRF_ ENSG00000137806|ENST00000260361|NDUFAF1 36.04419817259434 0.08350412372117409 1 Y{M(Oxidation (M))|F}V[C(Carbamidomethyl (C))C]R{M(Oxidation (M))|F} 7 5 27.682 0 0 2.4614 0 0 131.21004272681222 0 131.21004272681222 0 16.255244784138227 0 0 0 0.8252574989159953 0 0 0 Y{M(Oxidation (M))|F}V[C(Carbamidomethyl (C))C]R{M(Oxidation (M))|F} 2.4614 - 90 + NaN NaN 128653.5 NaN 16379 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20194 82.401 NaN 234620 35 0 35758 0.261 + 33996 YLWALDLGDF 10 48 606.8006499227157 1211.5867469122313 2 606.80224609375 MULTI HCD FTMS 0 0 0 20187 26833.2890625 0.17429793120667178 16 -0.4595184326171875 7 Unmodified _YLWALDLGDF_ REV__ENSG00000133048|ENST00000255409|CHI3L1 10.823927491677226 0.4098686510432541 1 [Y{I|L}]C 3 -1 27.447 0 0 2.2654 0 0 0 829.414053391 829.414053391 7.983324797206279 0 0 0 0 0 2 0 0 [Y{I|L}]C 2.2654 - 49 NaN NaN 126238.2 NaN 16380 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20195 82.404 NaN 162970 35 0 20975 0.264 -1 0 69 426.24574974605105 850.4769465589021 2 426.2455749511719 MULTI HCD FTMS 0 0 0 20187 63812.2109375 0.037363221081412885 -10 0.2718048095703125 8 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y 3 -1 9.4986 0 0 1.1169 0 0 0 440.2712940532959 440.2712940532959 2.1522748654137374 0 0 0 0 0 0.9208187539523752 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y 1.1169 - 31 NaN NaN 114025.2 NaN 16381 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20196 82.408 NaN 75986 35 0 10996 0.261 + 2065 DELCQFTLRPS 11 44 436.8796627166946 1307.6171587502838 3 436.8792724609375 MULTI HCD FTMS 0 0 0 20187 9820.404296875 0.35863810094769305 1 -0.0328369140625 9 Unmodified _DELCQFTLRPS_ REV__ENSG00000155926|ENST00000338087|SLA;REV__nc|ENSG00000155926|Q13239-2|SLA;REV__nc|ENSG00000155926|Q13239-3|SLA;REV__nc|ENSG00000155926|Q13239-5|SLA 1.214830529360525 0.41359283248740725 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 90498.9 NaN 16382 3812 20187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20198 82.413 NaN 6853400 35 0 795020 0.327 + 17891 MILELDPTF 9 92 547.7753373336277 1093.5361217340553 2 547.7759399414062 MULTI HCD FTMS 0 0 0 20197 5022676 0.9858989493404081 -2 0.06235504150390625 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 112.56 0 0 10.293 10.293 94.934 0 0 0 22.812799137384303 52.562120971232176 22.812799137384303 9.80249918074449 0 2.9916440611282624 2 1.7059771852360797 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}AE{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}A{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]} 10.293;9.3968;5.5924;5.5381;5.4326;5.3375;5.3283;4.626;4.5507;4.4319 +;-;-;-;-;-;-;-;-;- + 1743 NaN NaN 839401.2 NaN 16383 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20199 82.417 NaN 1201200 35 0 55479 0.261 + 23879 RSSKQLVDI 9 100 523.3036148573681 1044.592676781536 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20197 1225504.25 0.6207651163126426 -16 0.44891357421875 2 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F} 1 9 10.969 0 0 1.0501 0 0 879.545479371183 0 879.545479371183 0 4.503187623076952 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0501 - 51 + NaN NaN 271732.1 NaN 16384 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20200 82.421 NaN 1024000 35 0 144600 0.261 + 32201 VYTFQFQDF 9 86 597.7771247189748 1193.5396965047496 2 597.7770385742188 MULTI HCD FTMS 0 0 0 20197 562540.6875 0.5388155284742513 3 -0.08515167236328125 3 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 168.5375213894962 4.622051367253751E-09 1 [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 0 + 107.72 0 0 9.0251 9.0251 90.686 0 0 0 5.607346925073955 16.478174818886373 5.607346925073955 5.607346925073955 0 2.6549471895720984 1 1.9731975075880328 0.7614393726401688 + + [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F} 9.0251;8.5553;8.2536;7.9346;7.7838;7.4648;6.8478;6.7611;6.378;5.9896 +;-;-;-;-;-;-;-;-;- + 2410 NaN NaN 241493.6 NaN 16385 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20201 82.424 NaN 1152100 35 0 191100 0.261 + 35348 YYALEVSYF 9 103 577.7736665699496 1153.532780206699 2 577.7740478515625 MULTI HCD FTMS 0 0 0 20197 467368.9375 0.10648787275653429 10 -0.27570343017578125 4 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 81.61307344734483 0.005330412723537057 1 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F} 9 2 + 71.027 0 0 6.1574 6.1574 85.694 0 0 0 5.592838176744962 58.93151128513031 5.592838176744962 5.105742396127923 0 2.5189301784845295 0 0.5994850021680094 0 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}EVSY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{I|L}EVSY{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}EVSY{M(Oxidation (M))|F};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}A]SY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{I|L}[MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}V][MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YE]{[VA]|[{I|L}G]}Y{M(Oxidation (M))|F};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}T{[VA]|[{I|L}G]}Y{M(Oxidation (M))|F} 6.1574;5.7147;5.1135;5.0402;2.1994;1.9257;1.7394;1.667;1.4896;0.89904 -;-;-;-;-;-;-;-;-;- 2147 NaN NaN 253563.2 NaN 16386 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20202 82.427 NaN 860030 35 0 141680 0.261 + 19590 NTFFDMNIF 9 91 574.7556592451743 1147.4967655571486 2 574.2313232421875 MULTI HCD FTMS 0 0 0 20197 20277.125 0.5841446290635963 1 -0.0295257568359375 5 Unmodified _NTFFDMNIF_ chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229|ITGA6 11.640296217721598 0.25978676193971967 1 {I|L}KA[CS]DPT{M(Oxidation (M))|F} 9 8 39.867 0 0 3.4743 0 0 167.02559643959995 0 167.02559643959995 0 30.57570277971658 0 0 0 0 0 0.5010912013506126 0.3252574989159953 {I|L}KA[CS]DPT{M(Oxidation (M))|F} 3.4743 - 1080 + NaN NaN 210671 NaN 16387 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20203 82.431 NaN 924000 35 0 57563 0.261 -1 QDSRQEPCL 9 106 566.7540431006541 1131.4935332681082 2 567.7661743164062 MULTI HCD FTMS 0 0 0 20197 32287.318359375 0.734490100731704 5 -0.13425445556640625 6 Carbamidomethyl (C) _QDSRQEPC(Carbamidomethyl (C))L_ ENST00000317568.9_1_11:65154155-65156855:+|nuORF 15.847184025352803 0.2234401846867398 1 {[DS]|[MA]|[CV]|TT}QST{M(Oxidation (M))|F}VYW 9 -1 + 53.795 0 0 4.7544 4.7544 83.814 0 0 0 6.276362525516532 8.908555305749317 6.276362525516532 6.276362525516532 0 0 0 1.0941876774005248 0 {[DS]|[MA]|[CV]|TT}QST{M(Oxidation (M))|F}VYW;Q{[DS]|[MA]|[CV]|TT}ST{M(Oxidation (M))|F}VYW;{[DS]|[MA]|[CV]|TT}QST{M(Oxidation (M))|F}VMA{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[AG]ST{M(Oxidation (M))|F}VYW;Q{[DS]|[MA]|[CV]|TT}ST{M(Oxidation (M))|F}VMA{M(Oxidation (M))|F};[MT]{[QG]|[NA]}T{M(Oxidation (M))|F}VMA{M(Oxidation (M))|F};QY{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}VYW;{[DS]|[MA]|[CV]|TT}YV[{M(Oxidation (M))|F}T]QSW;{[DS]|[MA]|[CV]|TT}[AG]ST{M(Oxidation (M))|F}VMA{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}QST{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F} 4.7544;4.1997;3.967;3.9405;3.4123;3.4103;3.2801;3.1746;3.1571;2.9463 -;-;-;-;-;-;-;-;-;- 4899 + NaN NaN 216738.2 NaN 16388 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20204 82.434 NaN 144400 35 0 19779 0.262 + 14670 LGSVTPFVL 9 49 466.77587711484875 931.5372012964975 2 466.7756042480469 MULTI HCD FTMS 0 0 0 20197 43244.21875 0.9457405360123557 3 -0.08515167236328125 7 Unmodified _LGSVTPFVL_ REV__ENSG00000188897|ENST00000696174|unknown 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}V{I|L} 3 -1 30.688 0 0 3.2943 0 0 554.3065663068375 0 554.3065663068375 0 23.24031267727719 0 0 0 0.75 0 0 0 {M(Oxidation (M))|F}V{I|L} 3.2943 + + 26 NaN NaN 118633.7 NaN 16389 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20205 82.437 NaN 90229 35 0 16413 0.261 + 32757 WRFHVWLDK 9 37 643.8423577437807 1285.6701625543612 2 643.8432006835938 MULTI HCD FTMS 0 0 0 20197 25366.798828125 0.3065595447931711 10 -0.27570343017578125 8 Unmodified _WRFHVWLDK_ ENST00000291592.5_1_21:45875446-45876486:+|nuORF 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F}[WD] 3 6 7.4473 0 0 0.57925 0 0 819.489061424025 0 819.489061424025 0 0.45757490560674974 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[WD] 0.57925 - 5 NaN NaN 101786.8 NaN 16390 3813 20197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20207 82.442 NaN 672400 35 0 34838 0.327 -1 0 106 531.8170281056758 1061.6195032781516 2 531.817138671875 MULTI HCD FTMS 0 0 0 20206 609619.6875 0.5943904385791398 -9 0.25562286376953125 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 10.969 0 0 1.0332 0 0 896.5407506920172 0 896.5407506920172 0 4.731975075880328 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0332 - 132 + NaN NaN 185429.5 NaN 16391 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20208 82.447 NaN 575910 35 0 52352 0.261 + 28895 TWFTAGAKLLF 11 73 627.8474905822936 1253.6804282313872 2 627.84765625 MULTI HCD FTMS 0 0 0 20206 281496.84375 0.20316300468461973 11 -0.29857635498046875 2 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 124.953037156858 0.013497877353096458 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 97.644 0 0 7.7886 7.7886 90.438 0 0 0 10.522562268522577 81.04039720691517 10.522562268522577 9.164539485499262 0 3.274227503252014 0 1.8807196863200843 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]{I|L}{I|L}K{M(Oxidation (M))|F};{I|L}{I|L}K[HV]GAAAD{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}T[{I|L}V]{[NV]|[RG]}K{M(Oxidation (M))|F};{I|L}{I|L}K[HV]QAAD{I|L}{M(Oxidation (M))|F};{I|L}{I|L}KQ[HV]AAD{I|L}{M(Oxidation (M))|F} 7.7886;7.0576;6.3382;5.5349;5.4458;4.7148;3.7314;2.9902;2.9253;2.8719 -;+;+;-;-;-;-;-;-;- + 1204 NaN NaN 165701 NaN 16392 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20209 82.45 NaN 496850 35 0 95076 0.261 + 19894 NYFDEQFEF 9 59 619.7537661407403 1237.4929793482804 2 619.7537841796875 MULTI HCD FTMS 0 0 0 20206 275365.1875 0.5961009603168783 1 -0.02614593505859375 3 Unmodified _NYFDEQFEF_ ENSG00000162639|ENST00000651461|HENMT1 100.7086487251713 0.004245359191255521 1 [YN]{M(Oxidation (M))|F}DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 93.695 0 0 7.5713 7.5713 92.469 0 0 0 15.51415913489059 12.513487579716767 12.513487579716767 12.513487579716767 0 2.774227503252014 1.3010299956639813 1.610924374808178 1 + + [YN]{M(Oxidation (M))|F}DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DEQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DE[AG]{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}DE[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{M(Oxidation (M))|F} 7.5713;6.5601;6.0191;5.0079;4.4904 +;-;-;-;- + 437 + NaN NaN 155348.1 NaN 16393 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20210 82.454 NaN 701490 35 0 61204 0.262 + 6641 FPLSPDWQV 9 108 544.774382308405 1087.53421168361 2 544.7744750976562 MULTI HCD FTMS 0 0 0 20206 269328.0625 0.5609369618264687 9 -0.24617767333984375 4 Unmodified _FPLSPDWQV_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000434365.1_1_X:114938170-114938437:+|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 74.92900055777586 0.007493270374442853 1 S[DP]WQV 6 3 45.635 0 0 4.1962 0 0 357.2052479474625 0 357.2052479474625 0 27.76802492411967 0 0 0 1.2059771852360797 0 0.8921590589602533 0.2742275032520141 + S[DP]WQV 4.1962 + + 1242 NaN NaN 190746.4 NaN 16394 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20211 82.457 NaN 513540 35 0 25988 0.261 + 35596 YYIFIPSKF 9 97 589.3158590657515 1176.617165198303 2 589.8165283203125 MULTI HCD FTMS 0 0 0 20206 148926.90625 0.5393244249069724 1 -0.02614593505859375 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 15.847184025352803 0.2234401846867398 1 YYNA{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 8 6 46.368 0 0 3.9408 0 0 0 127.07166198471045 127.07166198471045 10.504347358675822 0 0 0 0 0.3807196863200844 2 0 0.4247425010840047 YYNA{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 3.9408 - 1826 NaN NaN 163816.7 NaN 16395 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20212 82.46 NaN 271340 35 0 17251 0.261 -1 VILELLFLM 9 84 553.8298338500571 1105.645114766914 2 553.82958984375 MULTI HCD FTMS 0 0 0 20206 136507.40625 0.3497815985464993 -10 0.28511810302734375 6 Oxidation (M) _VILELLFLM(Oxidation (M))_ ENST00000373365.4_1_6:38649802-38650640:-|nuORF 2.302733041254933 0.33356062215410776 1 PTV 3 -1 9.2968 0 0 0.84085 0 0 147.16440359088045 658.2899752757585 805.454378866639 0 0 0 0 0 0 0 0 0 PTV 0.84085 - 67 + NaN NaN 123013.2 NaN 16396 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20213 82.463 NaN 365450 35 0 61480 0.261 + -1 PLVLGMLLF 9 84 509.8036971120352 1017.5928412908704 2 509.8038024902344 MULTI HCD FTMS 0 0 0 20206 148765.15625 0.17627080524149305 50 -1.4425811767578125 7 Oxidation (M) _PLVLGM(Oxidation (M))LLF_ REV__ENST00000381638.6_1_17:3908682-3909213:-|nuORF 9.347437153973935 0.2795965555214564 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 18.672 0 0 1.8349 0 0 626.3455706383298 0 626.3455706383298 0 7.703037561203846 0 0 0 0 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 1.8349 + + 130 + NaN NaN 141451.4 NaN 16397 3814 20206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20215 82.468 NaN 1005300 35 0 205000 0.327 + 18358 MPLNVADLI 9 90 501.270536923985 1000.52652091477 2 501.270751953125 MULTI HCD FTMS 0 0 0 20214 632114.875 0.5015524870141747 5 -0.142120361328125 1 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 47.748688679222035 0.03472022231463587 1 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 54.812 0 0 5.4783 5.4783 88.902 0 0 0 6.253797948791195 40.6206570346977 6.253797948791195 13.155980316589364 0 0.9247425010840047 0.958607314841775 0.5866968715561641 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}AV{[CP]|[EA]}AD{I|L}{I|L};{[TV]|[{I|L}S]}A{[CP]|[EA]}VAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[{I|L}P]{[DS]|[MA]|[CV]|TT};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP][Q{I|L}]{[DS]|[MA]|[CV]|TT} 5.4783;4.1634;3.5616;3.3045;0.69365;0.093133 -;-;-;-;-;- 328 NaN NaN 239311.4 NaN 16398 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20216 82.473 NaN 1056200 35 0 247510 0.261 + 31453 VYDPLFSQL 9 72 541.2820775152878 1080.5496020973756 2 541.2821044921875 MULTI HCD FTMS 0 0 0 20214 471304.9375 0.6130845779233978 2 -0.055755615234375 2 Unmodified _VYDPLFSQL_ ENSG00000100104|ENST00000215917|SRRD 118.0683919894846 0.0016252157255221692 1 [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L} 9 0 + 87.775 0 0 8.1231 8.1231 91.62 0 0 0 10.299836332996207 10.299836332996207 10.299836332996207 9.208187539523749 0 2.1237125054200234 1.5228787452803376 0.6694451763165201 0 + + [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L};[YV]DP{I|L}{M(Oxidation (M))|F}S[AG]{I|L};[YV]{[NV]|[RG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SQ{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[NV]|[RG]}SQ{I|L};[YV]DP{I|L}{[NV]|[RG]}[YV];{[QS]|[NT]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L};{[QS]|[NT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[KC]M{I|L};[Q{I|L}]S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L};{[QN]|[E{I|L}]|[KN]}[MT]{I|L}[KC]M{I|L};[YV]VV[QP]D[YV] 8.1231;7.271;4.679;3.6924;3.5255;3.3459;3.2562;2.1862;2.1698;1.1397 +;-;-;-;-;-;-;-;-;- + 453 NaN NaN 241298.6 NaN 16399 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20217 82.476 NaN 846250 35 0 46767 0.261 -1 0 119 545.316932783597 1088.619312633994 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20214 358970.65625 0.46086070846917626 -10 0.281768798828125 3 NaN NaN 1 {I|L}{I|L}{I|L}SKN 6 -1 25.074 0 0 2.3033 0 0 402.1514787558942 0 402.1514787558942 0 11.094888016485811 0 0 0 0 0 0.3494850021680094 0 {I|L}{I|L}{I|L}SKN 2.3033 - 750 NaN NaN 210047.2 NaN 16400 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20218 82.48 NaN 297320 35 0 40323 0.261 + 6472 FPIPEEYTF 9 69 571.7740704404392 1141.5335879476784 2 571.7738647460938 MULTI HCD FTMS 0 0 0 20214 132852.703125 0.25173946703281996 13 -0.37100982666015625 4 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 64.23631603340823 0.01165516075559909 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F} 9 0 + 52.585 0 0 4.6066 4.6066 90.486 0 0 0 5.6424927368725974 45.59562510389476 5.6424927368725974 52.58532514725495 0 1.8494850021680094 0 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F} 4.6066 + + 167 NaN NaN 129889 NaN 16401 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20219 82.483 NaN 273150 35 0 25462 0.261 + 21657 PYSEYFEYF 9 51 622.761170270207 1243.507787607214 2 622.7615966796875 MULTI HCD FTMS 0 0 0 20214 105454.1796875 1 0 0 5 Unmodified _PYSEYFEYF_ ENSG00000171720|ENST00000305264|HDAC3;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENST00000491581.5_1_5:141004689-141007494:-|nuORF;nc|ENSG00000171720|O15379-2|HDAC3 30.636539890814138 0.10832830463492794 1 [YN][QA]Y{M(Oxidation (M))|F}E 7 5 48.02 0 0 3.8617 0 0 0 325.1190279596313 325.1190279596313 16.76554474077804 0 0 0 0 1.4247425010840047 1.6989700043360187 0.3807196863200844 0 [YN][QA]Y{M(Oxidation (M))|F}E 3.8617 - 54 + NaN NaN 142669.3 NaN 16402 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20220 82.486 NaN 130880 35 0 14738 0.261 -1 ELHYVEPCL 9 50 580.2740495300994 NaN 0 580.2864990234375 PEAK HCD FTMS 0 0 0 20214 14231.8662109375 1 0 0 6 Carbamidomethyl (C) _ELHYVEPC(Carbamidomethyl (C))L_ ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 7.289230182591677 0.2599242500475609 1 T{M(Oxidation (M))|F}Y 3 -1 14.693 0 0 1.2682 0 0 131.0712278474162 613.2607515924436 744.3319794398599 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}Y 1.2682 - 25 + NaN NaN 115106.5 NaN 16403 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20221 82.49 NaN 233560 35 0 18197 0.261 + 23490 RMCGLMSLI 9 65 512.2614566675062 1022.5083604018124 2 512.26220703125 MULTI HCD FTMS 0 0 0 20214 96459.4140625 0.5814212652194023 4 -0.11472320556640625 7 Unmodified _RMCGLMSLI_ REV__nc|ENSG00000171931|Q5XX13-2|FBXW10 13.90604991867851 0.24021115267848145 1 {I|L}{I|L} 2 -1 25.969 0 0 2.5397 0 0 778.327747318408 0 778.327747318408 0 -2.0509164228652565 -2.0509164228652565 0 0 0.5 0 0 0 {I|L}{I|L} 2.5397 + + 283 NaN NaN 132506.4 NaN 16404 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20222 82.493 NaN 346740 35 0 29904 0.261 + 34886 YSFLDYVM 8 59 527.2334912381457 1052.4524295430913 2 527.233154296875 MULTI HCD FTMS 0 0 0 20214 56628.375 0.41406266780306233 -4 0.1180267333984375 8 Oxidation (M) _YSFLDYVM(Oxidation (M))_ ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF 56.541270873467816 0.08727196028825994 1 DYV{M(Oxidation (M))|F} 4 4 59.923 0 0 5.6936 0 0 510.2485431381959 0 510.2485431381959 0 44.438200260161125 0 0 0 1.9247425010840047 0 1.1747425010840047 0 + DYV{M(Oxidation (M))|F} 5.6936 + + 67 NaN NaN 151329.3 NaN 16405 3815 20214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20224 82.498 NaN 2477300 35 0 284260 0.327 + 15151 LMSLIINTF 9 94 534.2939096770834 1066.5732664209668 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20223 1594891.125 0.4647727051683557 -7 0.19319915771484375 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 206.74871869215147 9.242385646021313E-18 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 98.081 0 0 9.1959 9.1959 92.089 0 0 0 8.03901102397704 28.54499950650252 8.03901102397704 8.547575072713158 0 2.6989700043360187 0 2.4500612056866315 0.6747425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[QT]V{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}KS{M(Oxidation (M))|F}{I|L} 9.1959;8.3945;7.6999;6.8985;5.772;5.6278;5.4856;5.0031;4.9828;4.9706 +;-;-;-;-;-;-;-;-;- + 2231 NaN NaN 461637.5 NaN 16406 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20225 82.502 NaN 1130300 35 0 82538 0.261 + 34600 YPNSWFRF 8 91 558.7666469777563 1115.5187410223125 2 558.766845703125 MULTI HCD FTMS 0 0 0 20223 534721.875 0.7975012921859685 -1 0.02947998046875 2 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 24.67388899826682 0.4122521268485776 1 {I|L}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 8 -1 85.219 0 0 7.6394 0 0 147.05110293813124 0 147.05110293813124 0 49.19735459469676 0 0 0 2.610924374808178 0 1.9124379954164592 0 {I|L}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 7.6394 - 1730 + NaN NaN 259858.5 NaN 16407 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20226 82.506 NaN 1313500 35 0 141310 0.261 -1 IYLNAGPMLF 10 96 577.7993772248652 1153.5842015165304 2 578.3162231445312 MULTI HCD FTMS 0 0 0 20223 36847.73046875 0.9618111868418214 5 -0.144927978515625 3 Oxidation (M) _IYLNAGPM(Oxidation (M))LF_ ENSG00000065883|ENST00000181839|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF;nc|ENSG00000065883|Q14004-2|CDK13 23.1484247019978 0.29458946244474227 1 AT{I|L}VE{I|L}{M(Oxidation (M))|F}[MT] 9 -1 38.638 0 0 3.3494 0 0 130.05983401243458 0 130.05983401243458 0 13.895009381826416 0 0 0 0 0 1.1549471895720984 0 AT{I|L}VE{I|L}{M(Oxidation (M))|F}[MT] 3.3494 - 1363 + NaN NaN 295789.1 NaN 16408 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20227 82.509 NaN 581890 35 0 31928 0.263 + 12008 KGPRGPTR 8 81 434.7589549485442 867.5033569638885 2 434.75921630859375 MULTI HCD FTMS 0 0 0 20223 389346.09375 0.2680277304953615 -4 0.11798858642578125 4 Unmodified _KGPRGPTR_ ENSG00000228727|ENST00000415669|SAPCD1;nc|ENSG00000228727|Q5SSQ6|SAPCD1 7.289230182591677 0.5311777711368266 1 A 1 8 8.9794 0 0 1.0351 0 0 61.053162872288176 732.4015596979124 793.4547225702006 0 0 0 0 0 0.5 0 0 0 A 1.0351 - 55 + NaN NaN 186843.6 NaN 16409 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20228 82.513 NaN 567920 35 0 158070 0.261 -1 LYLPKCCLL 9 67 590.3156375255153 1178.6167221178305 2 590.8165283203125 MULTI HCD FTMS 0 0 0 20223 248778.484375 0.9144725475988195 -1 0.02947998046875 5 2 Carbamidomethyl (C) _LYLPKC(Carbamidomethyl (C))C(Carbamidomethyl (C))LL_ ENST00000327569.7_1_X:138820151-138823186:-|nuORF 23.1484247019978 0.1603590852062899 1 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L} 11 -1 + 55.265 0 0 4.689 4.689 84.536 0 0 0 13.683185649087015 13.093185481980605 13.093185481980605 8.336685782334747 0 0.3807196863200844 1.3979400086720375 0.4247425010840047 0 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L};[Y{I|L}]E[KQ]E[SG]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}[C(Carbamidomethyl (C))Q]K{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y[KQ]E[SG]{I|L}{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{[C(Carbamidomethyl (C))E]|[WC]}K{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y[KQ]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}K{M(Oxidation (M))|F}[SG]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}G{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E[KQ]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}K[YQ]{I|L}{I|L} 4.689;3.9817;3.528;3.066;2.849;2.5118;2.0454;1.9371;1.5243;1.4912 -;-;-;-;-;-;-;-;-;- 551 NaN NaN 159208.8 NaN 16410 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20229 82.516 NaN 569130 35 0 99617 0.261 + 24462 RYLDLILNDF 10 64 641.345103977338 1280.675655021476 2 641.3458251953125 MULTI HCD FTMS 0 0 0 20223 85714.859375 0.12545373273126226 -3 0.08515167236328125 6 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 70.49555756994154 0.016998145436175466 1 D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F} 7 3 77.071 0 0 6.018 0 0 432.2464864632458 0 432.2464864632458 0 55.82850421621579 0 0 0 2.774227503252014 0 0.4247425010840047 0 + D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F} 6.018 + + 143 NaN NaN 171212.1 NaN 16411 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20230 82.519 NaN 451820 35 0 27029 0.263 + 32197 VYTFGLGQF 9 93 516.262929564102 1030.511306195004 2 516.262939453125 MULTI HCD FTMS 0 0 0 20223 98827.2578125 0.6562872245229658 -3 0.08515167236328125 7 Unmodified _VYTFGLGQF_ ENSG00000156313|ENST00000645032|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834|RPGR 32.30548876998284 0.10066689432505688 1 NA{M(Oxidation (M))|F} 3 8 28.456 0 0 2.7613 0 0 680.3523334187825 0 680.3523334187825 0 -2.478882258621695 -2.478882258621695 0 0 0.9247425010840047 0 0 0 NA{M(Oxidation (M))|F} 2.7613 - 986 + NaN NaN 142538.4 NaN 16412 3816 20223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20232 82.524 NaN 451600 35 0 49759 0.327 + 13458 KYPENFFLL 9 80 585.8132425088911 1169.6119320845821 2 585.8132934570312 MULTI HCD FTMS 0 0 0 20231 221567.921875 0.0011175691665388876 250 -6.047920227050781 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 40.23920728925047 0.06424668180817725 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 55.736 0 0 4.7653 4.7653 85.848 0 0 0 4.678024757013262 37.15227486541373 4.678024757013262 9.208187539523749 0 2.004432191740108 0 0 0.3807196863200844 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][VS][WD]{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][VS][WD]{I|L}{M(Oxidation (M))|F}{I|L};[YK][VS][WD]{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[QN]|[E{I|L}]|[KN]}CTRR{M(Oxidation (M))|F} 4.7653;3.978;3.6796;3.3928;3.0967;2.8923;2.3095;2.3072;1.7243;0.2978 +;-;-;-;-;-;-;-;-;- + 374 NaN NaN 153477.1 NaN 16413 3817 20231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20233 82.529 NaN 1024100 35 0 100260 0.261 + -1 LLMSCTSGTF 10 109 566.7540431006541 1131.4935332681082 2 566.7479858398438 MULTI HCD FTMS 0 0 0 20231 75302.328125 0.42747690691985235 5 -0.13813018798828125 2 Carbamidomethyl (C),Oxidation (M) _LLM(Oxidation (M))SC(Carbamidomethyl (C))TSGTF_ REV__ENST00000465082.5_1_2:219140214-219141746:-|nuORF 19.256988751693697 0.33098864134661865 1 {M(Oxidation (M))|F}[QA]NQNYT{M(Oxidation (M))|F} 9 -1 + 43.923 0 0 3.8819 3.8819 80.128 0 0 0 23.379231027444405 16.478174818886366 16.478174818886366 0.7944463708930272 0 0.6549471895720984 0 0.7302046884880937 0.5 {M(Oxidation (M))|F}[QA]NQNYT{M(Oxidation (M))|F};{M(Oxidation (M))|F}YM{M(Oxidation (M))|F}NYT{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[VP]DPT{M(Oxidation (M))|F};{M(Oxidation (M))|F}[QA]DS[YG]PT{M(Oxidation (M))|F};{M(Oxidation (M))|F}[QA]GGQNYT{M(Oxidation (M))|F};{M(Oxidation (M))|F}[QA]NQGGYT{M(Oxidation (M))|F};{M(Oxidation (M))|F}[QA]N[AG]NYT{M(Oxidation (M))|F};{M(Oxidation (M))|F}YM{M(Oxidation (M))|F}GGYT{M(Oxidation (M))|F};{M(Oxidation (M))|F}[C(Carbamidomethyl (C))Q][W{M(Oxidation (M))|F}]PT{M(Oxidation (M))|F};VC[WH]KDPT{M(Oxidation (M))|F} 3.8819;3.8117;3.3606;3.0941;3.0681;3.0681;3.0681;2.9931;2.9572;2.824 -;-;-;-;-;-;-;-;-;- 5535 + NaN NaN 256246.7 NaN 16414 3817 20231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20234 82.532 NaN 100450 35 0 17814 0.261 + 6087 FPEESSALIEF 11 40 634.8056704536384 1267.5967879740767 2 634.8046264648438 MULTI HCD FTMS 0 0 0 20231 61510.1015625 0.9936244070404497 2 -0.05896759033203125 3 Unmodified _FPEESSALIEF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 15.248480904072842 0.3242218977034194 1 {I|L}{I|L}E{M(Oxidation (M))|F} 4 7 39.68 0 0 3.1304 0 0 747.3022938459 0 747.3022938459 0 39.680475292681265 0 0 0 0.9247425010840047 0 0 0 + {I|L}{I|L}E{M(Oxidation (M))|F} 3.1304 + + 11 NaN NaN 116778.7 NaN 16415 3817 20231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20235 82.535 NaN 167320 35 0 18958 0.261 + 24225 RYFLPPYTF 9 50 602.3132694992909 1202.6119860653816 2 602.3129272460938 MULTI HCD FTMS 0 0 0 20231 41745.25390625 0.5887618002645322 21 -0.6006927490234375 4 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 29.081581746732265 0.1154664336125038 1 [Y{I|L}]{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E{I|L} 7 6 35.986 0 0 2.9923 0 0 0 274.13599150952 274.13599150952 0.2726570743408985 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E{I|L} 2.9923 - 107 NaN NaN 109109.7 NaN 16416 3817 20231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20236 82.539 NaN 129010 35 0 6686.2 0.261 + 33471 YHPLLPSTSF 10 48 581.3003840458728 NaN 0 581.3312377929688 PEAK HCD FTMS 0 0 0 20231 20154.5390625 0.8012117959568912 -1 0.026275634765625 5 Unmodified _YHPLLPSTSF_ REV__ENSG00000214414|ENST00000398290|TRIM77 6.2057823575117 0.3348729994311477 1 YN{M(Oxidation (M))|F} 3 -1 13.188 0 0 1.1363 0 0 571.3315897696767 162.05573450260002 733.3873242722767 0 0 0 0 0 0 0 0 0 YN{M(Oxidation (M))|F} 1.1363 - 30 + NaN NaN 101742.7 NaN 16417 3817 20231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20237 82.542 NaN 313910 35 0 49759 0.261 -1 MILWCIIF 8 70 556.2884764917745 1110.562400050349 2 556.2874755859375 MULTI HCD FTMS 0 0 0 20231 41482.15234375 0.5935610158642431 -1 0.026275634765625 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))ILWC(Carbamidomethyl (C))IIF_ ENST00000475912.1_1_2:37509613-37518050:-|nuORF 6.354104778181461 0.5325651638111438 1 {I|L}C(Carbamidomethyl (C))QTPT{M(Oxidation (M))|F} 7 -1 27.644 0 0 2.4892 0 0 245.16464722007396 0 245.16464722007396 0 18.88312609025668 0 0 0 0 0 0 0 {I|L}C(Carbamidomethyl (C))QTPT{M(Oxidation (M))|F} 2.4892 - 234 + NaN NaN 125894.2 NaN 16418 3817 20231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20239 82.547 NaN 5781400 35 0 659310 0.327 + 17892 MILELDPTF 9 90 547.7753373336277 1093.5361217340553 2 547.7760009765625 MULTI HCD FTMS 0 0 0 20238 4016032 0.7883052240115543 3 -0.0958251953125 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 109.83 0 0 10.043 10.043 95.007 0 0 0 21.399655778833775 51.94632681510623 21.399655778833775 10.726576900918644 0 2.947621246364342 2 1.6527084789088669 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}AE{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}A{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]} 10.043;9.0623;6.1538;5.5485;5.4294;5.185;5.1765;5.1185;4.4118;4.1376 +;-;-;-;-;-;-;-;-;- + 1796 NaN NaN 700087.1 NaN 16419 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20240 82.551 NaN 1356300 35 0 66205 0.261 + 23880 RSSKQLVDI 9 112 523.3036148573681 1044.592676781536 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20238 1387382.125 0.7027624964953866 -11 0.30132293701171875 2 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 1 Q 1 8 9.2917 0 0 0.88951 0 0 546.3253338306936 367.19742590712923 913.5227597378228 0 0 0 0 0 0.3807196863200844 0 0 0 + Q 0.88951 + + 167 + NaN NaN 292855.2 NaN 16420 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20241 82.555 NaN 1372600 35 0 333160 0.261 + 22922 QYSPLLAAF 9 65 505.27124426423137 1008.5279355952628 2 505.27142333984375 MULTI HCD FTMS 0 0 0 20238 725453.75 0.800935791119079 1 -0.03614044189453125 3 Unmodified _QYSPLLAAF_ ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1 92.4914307365334 0.004460681868130716 1 [YQ]S[{I|L}P]{I|L}AA{M(Oxidation (M))|F} 9 0 + 72.176 0 0 7.1566 7.1566 95.422 0 0 0 13.186814654273675 62.7119811855394 13.186814654273675 72.17593133730006 0 2.5 0 1.1549471895720984 1.055462187404089 + + [YQ]S[{I|L}P]{I|L}AA{M(Oxidation (M))|F} 7.1566 + + 88 NaN NaN 295681.2 NaN 16421 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20242 82.558 NaN 1178800 35 0 81408 0.261 -1 0 94 426.24574974605105 850.4769465589021 2 426.2459716796875 MULTI HCD FTMS 0 0 0 20238 1074668 0.6292378446571486 -4 0.10472869873046875 4 NaN NaN 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVQ 5 -1 11.77 0 0 1.3839 0 0 0 261.1339795752528 261.1339795752528 0.8585655819296534 0 0 0 0 0.6421590589602533 0 0.6307196863200843 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVQ 1.3839 - 52 NaN NaN 269363.9 NaN 16422 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20243 82.562 NaN 749910 35 0 76274 0.261 + 16341 LRQFRYTF 8 98 565.8082770126997 1129.6020010921993 2 566.2976684570312 MULTI HCD FTMS 0 0 0 20238 14773.5126953125 0.3170036161026959 9 -0.2628173828125 5 Unmodified _LRQFRYTF_ ENSG00000143315|ENST00000368090|PIGM 9.347437153973935 0.5250182646323369 1 PT{M(Oxidation (M))|F} 3 6 20.143 0 0 1.7832 0 0 766.4227541212994 0 766.4227541212994 0 5.617806642716522 0 0 0 0 0 0.23965182871044374 0 PT{M(Oxidation (M))|F} 1.7832 - 1842 + NaN NaN 214927.1 NaN 16423 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20244 82.565 NaN 467880 35 0 52997 0.261 + 17617 LYYDAIWHF 9 73 614.2951260546212 1226.5756991760422 2 614.7948608398438 MULTI HCD FTMS 0 0 0 20238 128589.84375 0.0075459706058296815 83 -1.9483489990234375 6 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 81.61307344734483 0.005330412723537057 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 74.592 0 0 6.0814 6.0814 90.168 0 0 0 14.572034164243561 7.632192780232785 7.632192780232785 14.057875029352964 0 2.3455612550363796 2 0.3054621874040891 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[YN]AWVWE{I|L}{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}WE{I|L}{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]YW{[HG]|PP}E{I|L}{M(Oxidation (M))|F};{I|L}YM{[HG]|PP}AD[NG][H{I|L}];[Y{I|L}]Y{[HG]|PP}[YQ]H{M(Oxidation (M))|F} 6.0814;4.9352;4.21;3.976;3.6329;3.4524;3.3875;3.2637;2.9195 +;+;-;-;-;-;-;-;- + 1040 + NaN NaN 161684.1 NaN 16424 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20245 82.568 NaN 353450 35 0 43995 0.261 + 17247 LYPFLGIRF 9 68 563.326310441789 1124.638067950378 2 563.3265991210938 MULTI HCD FTMS 0 0 0 20238 176072.6875 1 0 0 7 Unmodified _LYPFLGIRF_ ENSG00000137806|ENST00000260361|NDUFAF1 42.09456458481378 0.05572955244001856 1 [Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[VA]|[{I|L}G]}R{M(Oxidation (M))|F} 9 0 + 41.845 0 0 3.7208 3.7208 80.622 0 0 0 18.49239948601209 11.962724883926654 11.962724883926654 2.2454626555970876 0 1.774227503252014 1.6989700043360187 0 0 + + [Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[VA]|[{I|L}G]}R{M(Oxidation (M))|F};[Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[RV]A{M(Oxidation (M))|F};[Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RV]{I|L}A{M(Oxidation (M))|F};[Y{I|L}]KK{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}A{M(Oxidation (M))|F} 3.7208;3.5211;2.8758;2.5713 +;-;-;- + 438 + NaN NaN 131321.9 NaN 16425 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20246 82.572 NaN 159410 35 0 10623 0.261 + 337 AGLSFTEWL 9 65 512.2614566675062 1022.5083604018124 2 512.2607421875 MULTI HCD FTMS 0 0 0 20238 47344.71875 0.2853762542995103 7 -0.19384765625 8 Unmodified _AGLSFTEWL_ REV__ENSG00000182511|ENST00000328850|FES;REV__nc|ENSG00000182511|P07332-2|FES;REV__nc|ENSG00000182511|P07332-3|FES;REV__nc|ENSG00000182511|P07332-4|FES 15.847184025352803 0.2234401846867398 1 {I|L}{I|L} 2 -1 20.969 0 0 2.0508 0 0 778.322329609736 0 778.322329609736 0 0.06621263074983119 0 0 0 0 0 0 0 {I|L}{I|L} 2.0508 - 237 NaN NaN 97517.9 NaN 16426 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20247 82.575 NaN 99078 35 0 15714 0.261 + -1 CEECHCSLI 9 43 604.2302079246074 NaN 0 604.2298583984375 PEAK HCD FTMS 0 0 0 20238 19992.0078125 0.30765251328153487 -4 0.10472869873046875 9 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))EEC(Carbamidomethyl (C))HC(Carbamidomethyl (C))SLI_ REV__ENSG00000124479|ENST00000642620|NDP 0.6014990680409731 0.29233206172879045 1 D 1 -1 3.9794 0 0 0.32984 0 0 163.99452121855217 924.3933199518186 1088.3878411703708 0 0 0 0 0 0 0 0 0 D 0.32984 - 4 + NaN NaN 105979 NaN 16427 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20248 82.578 NaN 87875 35 0 11578 0.264 + 775 ASRRSADRWD 10 52 407.20398829418485 NaN 0 407.2042236328125 PEAK HCD FTMS 0 0 0 20238 35737.45703125 0.5068627777961836 -35 0.9838790893554688 10 Unmodified _ASRRSADRWD_ REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF 2.9952420565917617 0.3376207769591857 1 G 1 -1 4.6041 0 0 0.56673 0 0 281.6021161373947 470.7449129693969 752.3470291067916 0 0 0 0 0 0 0 0 0 G 0.56673 - 1 + NaN NaN 92223.6 NaN 16428 3818 20238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20250 82.583 NaN 767900 35 0 149150 0.327 + 6588 FPLHLPLEL 9 96 539.8184050522059 1077.6222571712117 2 539.8186645507812 MULTI HCD FTMS 0 0 0 20249 306224 1 0 0 1 Unmodified _FPLHLPLEL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 60.38955033654506 0.017036522530421875 1 {I|L}P{I|L}E{I|L} 5 4 40.89 0 0 3.7945 0 0 494.26431254020514 0 494.26431254020514 0 18.97451973985737 0 0 0 1.1549471895720984 0 0.28872548999643577 0 + {I|L}P{I|L}E{I|L} 3.7945 + + 783 NaN NaN 199857.9 NaN 16429 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20251 82.587 NaN 665190 35 0 91276 0.261 + 21656 PYSCGECGKGF 11 82 574.2311912801802 1146.4478296271602 2 574.2313842773438 MULTI HCD FTMS 0 0 0 20249 268893.28125 0.7591021219361187 2 -0.05968475341796875 2 Unmodified _PYSCGECGKGF_ ENSG00000278318|ENST00000614049|ZNF229;nc|ENSG00000278318|Q9UJW7-2|ZNF229 10.073929032068715 0.3693079378189861 1 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[TP]{M(Oxidation (M))|F} 8 10 29.43 0 0 2.567 0 0 165.97640334235751 0 165.97640334235751 0 11.593793813122062 0 0 0 1 0 0 0.3054621874040891 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[TP]{M(Oxidation (M))|F} 2.567 - 423 + NaN NaN 184583.7 NaN 16430 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20252 82.591 NaN 334780 35 0 52962 0.261 + 17618 LYYDAIWHF 9 64 614.2951260546212 1226.5756991760422 2 614.2957763671875 MULTI HCD FTMS 0 0 0 20249 113330.5234375 0.004950052589971038 84 -1.9573516845703125 3 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 71.13359017698441 0.008721403657255008 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 77.062 0 0 6.2827 6.2827 84.835 0 0 0 2.9782403511214994 2.9782403511214994 2.9782403511214994 2.9782403511214994 0 2.5969100130080562 2 0 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};{I|L}YY[PG]V{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YY[RP]{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[YQ]H{M(Oxidation (M))|F} 6.2827;6.0398;4.937;4.727;4.6818;4.5896;3.2461 +;+;-;-;-;-;- + 611 + NaN NaN 132983.6 NaN 16431 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20253 82.594 NaN 253820 35 0 27775 0.261 + 32202 VYTFQFQDF 9 62 597.7771247189748 1193.5396965047496 2 597.7780151367188 MULTI HCD FTMS 0 0 0 20249 162848.640625 0.15598049760564706 9 -0.25628662109375 4 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 69.33821966488729 0.009302356455414924 1 [Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 2 + 101.95 0 0 8.5416 8.5416 92.332 0 0 0 20.87128018967597 80.97804375441612 20.87128018967597 9.208187539523749 0 2.305462187404089 1.6989700043360187 1.1989700043360187 0.7059771852360797 [Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}][AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CA]|SS}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CA]|SS}{M(Oxidation (M))|F}{[WT]|[RM]}{M(Oxidation (M))|F}[VS] 8.5416;7.7701;7.4511;6.4107;5.6279;4.8564;4.5374;3.0476;1.5001 -;-;-;-;-;-;-;-;- 383 NaN NaN 135534.6 NaN 16432 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20254 82.598 NaN 186600 35 0 15922 0.264 + 14195 LAPAVTSQS 9 64 437.2367066198913 872.4588603065827 2 437.2369689941406 MULTI HCD FTMS 0 0 0 20249 133278.5 0.6701910170236745 -1 0.03614044189453125 5 Unmodified _LAPAVTSQS_ ENSG00000205108|ENST00000378788|FAM205A;nc|ENSG00000257198|Q63HN1|SPATA31F2P 3.5964929083625545 0.32375295897743744 1 YY 2 9 12.206 0 0 1.3991 0 0 370.2197159775758 173.0819033258422 543.301619303418 0 0 0 0 0 0.4247425010840047 0 0 0 YY 1.3991 - 135 + NaN NaN 108980.6 NaN 16433 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20255 82.601 NaN 268550 35 0 32808 0.261 + 1762 CLLMQIMLF 9 73 556.2884764917745 1110.562400050349 2 556.2890625 MULTI HCD FTMS 0 0 0 20249 56424.05078125 0.8073620824532844 1 -0.02739715576171875 6 Unmodified _CLLMQIMLF_ REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant 8.593279151180031 0.2858735984551981 1 {I|L}DPT{M(Oxidation (M))|F} 5 -1 26.287 0 0 2.367 0 0 519.272313235699 0 519.272313235699 0 14.832881222565248 0 0 0 0 0 0 0 {I|L}DPT{M(Oxidation (M))|F} 2.367 - 265 + NaN NaN 119282.2 NaN 16434 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20256 82.604 NaN 155830 35 0 25376 0.261 -1 LFFNSCTC 8 41 488.6980511461374 975.3815493590748 2 488.6980895996094 MULTI HCD FTMS 0 0 0 20249 63148.03515625 1 0 0 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFFNSCTC_ ENST00000009041.11_1_7:38269941-38270055:+|nuORF 2.302733041254933 0.5385759549224092 1 A 1 -1 3.9794 0 0 0.40798 0 0 652.243592671378 249.07459436588127 901.3181870372592 0 0 0 0 0 0 0 0 0 A 0.40798 - 5 + NaN NaN 108669.5 NaN 16435 3819 20249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20258 82.61 NaN 836810 35 0 38691 0.327 -1 0 94 531.8170281056758 1061.6195032781516 2 531.8174438476562 MULTI HCD FTMS 0 0 0 20257 853427.1875 0.8321072476411562 -3 0.08636474609375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.0921 0 0 896.5402624107672 0 896.5402624107672 0 1.3601701108756892 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0921 - 54 + NaN NaN 204078.5 NaN 16436 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20259 82.614 NaN 638670 35 0 120100 0.261 + 18359 MPLNVADLI 9 92 501.270536923985 1000.52652091477 2 501.2707214355469 MULTI HCD FTMS 0 0 0 20257 351247.375 0.2786977517155413 10 -0.27806854248046875 2 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 60.07390631473393 0.0174780869009295 1 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 57.519 0 0 5.7488 5.7488 89.588 0 0 0 5.039325666156316 37.2147165127528 5.039325666156316 13.762484661855801 0 1.535666875892183 0.9208187539523752 0.3054621874040891 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}AV{[CP]|[EA]}AD{I|L}{I|L};{[TV]|[{I|L}S]}A{[CP]|[EA]}VAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}A{[NV]|[RG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{I|L}{[NV]|[RG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[{I|L}P]{[DS]|[MA]|[CV]|TT};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]EV[KS];{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}[KP][EP]{I|L} 5.7488;4.3733;4.1705;2.5967;1.8753;1.6791;0.80406;0.16369;0.13855 -;-;-;-;-;-;-;-;- 551 NaN NaN 180889.2 NaN 16437 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20260 82.618 NaN 433320 35 0 38238 0.261 + 31131 VTSFSKVNLLF 11 74 627.8606170880635 NaN 0 627.8475952148438 PEAK HCD FTMS 0 0 0 20257 15375.8935546875 1 0 0 3 Unmodified _VTSFSKVNLLF_ REV__ENST00000558841.1_1_15:52338240-52338339:+|nuORF 20.41453444215458 0.2532867789550098 1 {I|L}{I|L}KQAT{M(Oxidation (M))|F} 7 -1 33.045 0 0 2.6358 0 0 165.10413118791877 284.1037691705688 449.20790035848756 0 0 0 0 0 0 0 1.8411290632962718 0 {I|L}{I|L}KQAT{M(Oxidation (M))|F} 2.6358 - 682 + NaN NaN 152896.9 NaN 16438 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20261 82.621 NaN 707830 35 0 66882 0.261 -1 0 104 553.8298338500571 1105.645114766914 2 553.8298950195312 MULTI HCD FTMS 0 0 0 20257 330076.96875 0.845777184875329 -4 0.112640380859375 4 NaN NaN 1 H{I|L}RS 4 -1 12.467 0 0 1.1275 0 0 237.15805294700255 372.1926363580688 609.3506893050713 0 0 0 0 0 0 0 0.3494850021680094 0 H{I|L}RS 1.1275 - 269 + NaN NaN 196120.7 NaN 16439 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20262 82.625 NaN 1038900 35 0 132730 0.261 + 28881 TVYIHELTF 9 83 561.7947856164718 1121.5750182997435 2 561.7792358398438 MULTI HCD FTMS 0 0 0 20257 46180.61328125 0.3433907351539784 -4 0.112640380859375 5 Unmodified _TVYIHELTF_ ENST00000284268.6_1_5:14710442-14710625:-|nuORF 16.942295170755138 0.21397866736869717 1 P[WM]Y{I|L}T{M(Oxidation (M))|F} 7 6 38.562 0 0 3.4382 0 0 165.11222680761972 0 165.11222680761972 0 7.627881306118454 0 0 0 0 0 1.2856668758921828 0 P[WM]Y{I|L}T{M(Oxidation (M))|F} 3.4382 - 1421 + NaN NaN 237486 NaN 16440 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20263 82.628 NaN 324360 35 0 36686 0.261 + -1 EMESTFIF 8 80 510.2228889475405 1018.4312249618811 2 510.22332763671875 MULTI HCD FTMS 0 0 0 20257 199852.1875 0.5640131417010182 -3 0.08636474609375 6 Oxidation (M) _EM(Oxidation (M))ESTFIF_ REV__ENSG00000139144|ENST00000538779|PIK3C2G;REV__nc|ENSG00000139144|O75747-2|PIK3C2G;REV__PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.434 0 0 853.3526249636374 0 853.3526249636374 0 9.030899869919438 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.434 + + 84 + NaN NaN 136172.9 NaN 16441 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20264 82.631 NaN 510990 35 0 52546 0.261 + 32198 VYTFGLGQF 9 92 516.262929564102 1030.511306195004 2 516.7793579101562 MULTI HCD FTMS 0 0 0 20257 58511.20703125 0.610361136961282 2 -0.05176544189453125 7 Unmodified _VYTFGLGQF_ ENSG00000156313|ENST00000645032|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834|RPGR 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}{I|L}[DP]WA{I|L} 7 9 30.666 0 0 2.9758 0 0 0 185.09327112369377 185.09327112369377 5.47183545729396 0 0 0 0 0.6421590589602533 1.3979400086720375 0 0 {M(Oxidation (M))|F}{I|L}[DP]WA{I|L} 2.9758 - 738 + NaN NaN 151913.8 NaN 16442 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20265 82.635 NaN 434320 35 0 30189 0.261 -1 FPTVVIYVM 9 83 542.7909082805446 1083.5672636278891 2 542.7909545898438 MULTI HCD FTMS 0 0 0 20257 70301.0234375 0.14524945759840982 14 -0.3994140625 8 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.21397866736869717 1 TN{I|L}{I|L}{[NV]|[RG]}V{M(Oxidation (M))|F} 8 -1 47.846 0 0 4.4156 0 0 165.07838637519689 0 165.07838637519689 0 22.26280941356464 0 0 0 1 0 0.7302046884880937 1.0356668758921828 TN{I|L}{I|L}{[NV]|[RG]}V{M(Oxidation (M))|F} 4.4156 - 1227 NaN NaN 139922 NaN 16443 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20266 82.638 NaN 156350 35 0 35470 0.261 + 29564 VAAVITITF 9 40 467.7838952392175 933.553237545235 2 467.783935546875 MULTI HCD FTMS 0 0 0 20257 109519.3515625 0.41343024538364714 -4 0.112640380859375 9 Unmodified _VAAVITITF_ ENSG00000133027|ENST00000255389|PEMT;ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1-3|PEMT;nc|ENSG00000133027|Q9UBM1|PEMT 54.773552608820026 0.024892918755467567 1 [Q{I|L}]V{I|L}T{I|L}T{M(Oxidation (M))|F} 8 3 + 63.81 0 0 6.8352 6.8352 85.141 0 0 0 4.6040937697618745 56.82048784621223 4.6040937697618745 1.2371250542002343 0 2.274227503252014 0 0.8494850021680094 0 [Q{I|L}]V{I|L}T{I|L}T{M(Oxidation (M))|F};[Q{I|L}]{I|L}VT{I|L}T{M(Oxidation (M))|F} 6.8352;6.7027 -;- 94 NaN NaN 107393 NaN 16444 3820 20257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20268 82.643 NaN 4486000 35 0 533580 0.327 + 15152 LMSLIINTF 9 110 534.2939096770834 1066.5732664209668 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20267 3042987.5 0.8867674476328231 -2 0.05968475341796875 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 223.81148253027484 4.831502538880383E-24 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 97.51 0 0 9.1424 9.1424 93.95 0 0 0 4.762036441594205 20.588818996692424 4.762036441594205 9.489700043360187 0 2.9802046884880937 0 2.23239816956497 0.7302046884880937 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F} 9.1424;8.2526;8.2325;7.5944;6.7047;6.6845;6.2811;5.7898;5.7017;5.538 +;-;-;-;-;-;-;-;-;- + 3068 NaN NaN 755609.4 NaN 16445 3821 20267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20269 82.647 NaN 1402100 35 0 90625 0.261 -1 0 131 545.316932783597 1088.619312633994 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20267 595000 0.7638845035517019 -4 0.11865234375 2 NaN NaN 1 {M(Oxidation (M))|F}S{I|L}{I|L}{I|L}N 6 -1 32.227 0 0 2.9604 0 0 113.14845747698355 285.0851229303344 398.23358040731796 0 0 0 0 0 0 0 0.5356668758921829 0.5010912013506126 {M(Oxidation (M))|F}S{I|L}{I|L}{I|L}N 2.9604 - 1772 + NaN NaN 296272.3 NaN 16446 3821 20267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20270 82.651 NaN 763320 35 0 49910 0.261 + 34601 YPNSWFRF 8 85 558.7666469777563 1115.5187410223125 2 558.7669677734375 MULTI HCD FTMS 0 0 0 20267 351017.71875 0.5235190430226851 4 -0.0980224609375 3 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 24.67388899826682 0.4122521268485776 1 {I|L}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 8 -1 83.335 0 0 7.4705 0 0 147.0550702232875 0 147.0550702232875 0 49.613766268647865 0 0 0 2.1861818737241734 0 1.9604093769761874 0 {I|L}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 7.4705 - 1502 + NaN NaN 209418.2 NaN 16447 3821 20267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20271 82.654 NaN 369950 35 0 144020 0.261 + -1 KKMTGKKEI 9 58 539.8184050522059 1077.6222571712117 2 540.3304443359375 MULTI HCD FTMS 0 0 0 20267 55470.46484375 0.3645685028712733 2 -0.045623779296875 4 Oxidation (M) _KKM(Oxidation (M))TGKKEI_ REV__ENSG00000137815|ENST00000389629|RTF1 10.073929032068715 0.27331982688540024 1 H[{I|L}P]E{I|L} 5 -1 22.218 0 0 2.0618 0 0 470.2755773564615 0 470.2755773564615 0 4.259687322722812 0 0 0 0 0 0 0 H[{I|L}P]E{I|L} 2.0618 - 60 NaN NaN 142840 NaN 16448 3821 20267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20272 82.657 NaN 272460 35 0 23005 0.261 + 34887 YSFLDYVM 8 67 527.2334912381457 1052.4524295430913 2 527.2334594726562 MULTI HCD FTMS 0 0 0 20267 88496.6015625 0.6470808836466418 2 -0.045623779296875 5 Oxidation (M) _YSFLDYVM(Oxidation (M))_ ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF 56.541270873467816 0.08727196028825994 1 DYV{M(Oxidation (M))|F} 4 4 56.3 0 0 5.3494 0 0 510.24762366284637 0 510.24762366284637 0 42.320618910682484 0 0 0 1.9247425010840047 0 0.75 0 + DYV{M(Oxidation (M))|F} 5.3494 + + 188 NaN NaN 122802 NaN 16449 3821 20267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20274 82.662 NaN 1177100 35 0 75843 0.327 + 20903 PKGPRSRA 8 100 434.7589549485442 867.5033569638885 2 434.7591857910156 MULTI HCD FTMS 0 0 0 20273 1084243.625 0.746398545607121 2 -0.04567718505859375 1 Unmodified _PKGPRSRA_ ENST00000381298.6_1_5:55290715-55290820:-|nuORF 4.75600775471527 0.5349361699807423 1 A 1 7 7.7866 0 0 0.89759 0 0 105.07953641336685 688.376140191152 793.4556766045189 0 0 0 0 0 0.3807196863200844 0 0 0 + A 0.89759 + + 56 + NaN NaN 254741.1 NaN 16450 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20275 82.667 NaN 364450 35 0 73286 0.261 + 24463 RYLDLILNDF 10 53 641.345103977338 1280.675655021476 2 641.345703125 MULTI HCD FTMS 0 0 0 20273 164496.875 0.2407604368933593 3 -0.07854461669921875 2 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 76.41605946988834 0.009982875570622314 1 [YR]{I|L}D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F} 10 0 + 79.831 0 0 6.2335 6.2335 87.521 0 0 0 3.724089770347021 63.63290021996811 3.724089770347021 9.164539485499247 0 2.774227503252014 0 0.3494850021680094 0 + + [YR]{I|L}D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F};[YR]{I|L}D{I|L}{I|L}{I|L}GGD{M(Oxidation (M))|F} 6.2335;5.5179 +;- + 237 NaN NaN 137113.5 NaN 16451 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20276 82.67 NaN 564740 35 0 50949 0.261 + 17169 LYLSTEIWGS 10 83 584.7976087160688 1167.5806644989375 2 585.8131103515625 MULTI HCD FTMS 0 0 0 20273 36464.58984375 0.9400844319524184 -1 0.01947784423828125 3 Unmodified _LYLSTEIWGS_ ENSG00000185662|ENST00000523047|SMIM23 13.042465956692817 0.38911719078024076 1 E{I|L}{M(Oxidation (M))|F}ST 5 8 53.914 0 0 4.6176 0 0 0 587.2487276666624 587.2487276666624 28.605384569831003 0 0 0 0 0.5 1.2218487496163564 0.3252574989159953 0 E{I|L}{M(Oxidation (M))|F}ST 4.6176 - 1655 + NaN NaN 170218.7 NaN 16452 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20277 82.674 NaN 134810 35 0 12611 0.261 + 18463 MPWILTDHIL 10 54 619.8340201176273 1237.6534873020546 2 619.8340454101562 MULTI HCD FTMS 0 0 0 20273 55042.55078125 0.6155586861096911 1 -0.02614593505859375 4 Unmodified _MPWILTDHIL_ ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1 34.40172386719151 0.19398797222092762 1 {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}H{I|L}{I|L} 7 3 22.471 0 0 1.8156 0 0 414.17146498847814 0 414.17146498847814 0 7.862073881113501 0 0 0 1.274227503252014 0 0 0 + {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}H{I|L}{I|L} 1.8156 + + 72 NaN NaN 106312.6 NaN 16453 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20278 82.677 NaN 260890 35 0 49475 0.261 + 7807 FYPQIINTF 9 63 571.7975583512887 1141.5805637693772 2 571.7974243164062 MULTI HCD FTMS 0 0 0 20273 78142.21875 0.902713934868018 2 -0.04567718505859375 5 Unmodified _FYPQIINTF_ ENSG00000091656|ENST00000651372|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;nc|ENSG00000091656|Q86UP3-2|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3|ZFHX4;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant 47.748688679222035 0.03472022231463587 1 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 4 50.565 0 0 4.4293 0 0 535.2441512711335 0 535.2441512711335 0 36.75226126028305 0 0 0 1.2887254899964358 0 0.4247425010840047 0.3252574989159953 + {I|L}{I|L}NT{M(Oxidation (M))|F} 4.4293 + + 159 + NaN NaN 119926.2 NaN 16454 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20279 82.68 NaN 126750 35 0 16890 0.261 -1 MPLSEDFVWM 10 59 635.7775222077765 1269.540491482353 2 636.2803955078125 MULTI HCD FTMS 0 0 0 20273 32928.57421875 0.5828303572373073 3 -0.07854461669921875 6 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 10.073929032068715 0.4168838835836452 1 VW{M(Oxidation (M))|F} 3 -1 34.693 0 0 2.7327 0 0 819.3449574201187 0 819.3449574201187 0 23.723637474483468 0 0 0 1 0 0 0 VW{M(Oxidation (M))|F} 2.7327 + + 46 NaN NaN 98486.9 NaN 16455 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20280 82.683 NaN 205060 35 0 33748 0.264 + 21047 PLTRILKL 8 47 477.3288714669404 952.6431900006809 2 477.3288269042969 MULTI HCD FTMS 0 0 0 20273 33945.046875 0.5596404620000187 -1 0.01947784423828125 7 Unmodified _PLTRILKL_ ENSG00000198774|ENST00000361228|RASSF9 2.577480529830294 0.5381683276125971 1 D 1 8 7.7423 0 0 0.81272 0 0 686.516952062984 148.0747469537719 834.5916990167559 0 0 0 0 0 0 0 0.4247425010840047 0 D 0.81272 - 16 + NaN NaN 114491.4 NaN 16456 3822 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20282 82.688 NaN 3928500 35 0 457330 0.326 + 17893 MILELDPTF 9 87 547.7753373336277 1093.5361217340553 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20281 2564238.25 0.5033332423858291 8 -0.22629547119140625 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 107.3 0 0 9.8126 9.8126 98.477 0 0 0 18.72408977034702 53.5434834131955 18.72408977034702 49.90540356723386 0 2.9674165578762484 2 1.3807196863200843 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]E{I|L}{[QN]|[E{I|L}]|[KN]};[TP]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[VP]{I|L}E{I|L}[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F} 9.8126;5.2489;5.1218;4.9556;4.9422;3.9827;3.5954;3.5931;3.3914;3.1451 +;-;-;-;-;-;-;-;-;- + 1737 NaN NaN 577128.3 NaN 16457 3823 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20283 82.693 NaN 1478200 35 0 66438 0.261 + 23881 RSSKQLVDI 9 106 523.3036148573681 1044.592676781536 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20281 1496146.25 0.7578557160466592 -6 0.164276123046875 2 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 1 Q 1 8 8.9794 0 0 0.85961 0 0 546.3255492743148 367.1968338343767 913.5223831086914 0 0 0 0 0 0.5 0 0 0 + Q 0.85961 + + 115 + NaN NaN 304837.1 NaN 16458 3823 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20284 82.696 NaN 1512100 35 0 182170 0.261 + 12875 KYFPYLVLL 9 107 578.3442384743402 1154.6739240154802 2 578.344482421875 MULTI HCD FTMS 0 0 0 20281 692274.25 1 0 0 3 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 64.23631603340823 0.01165516075559909 1 [YK]{M(Oxidation (M))|F}PY{I|L}V{I|L}{I|L} 9 0 + 56.364 0 0 4.8814 4.8814 89.325 0 0 0 5.653404750378719 32.50275707651592 5.653404750378719 22.221769348008145 0 2.0356668758921828 0 0 0.23965182871044374 + + [YK]{M(Oxidation (M))|F}PY{I|L}V{I|L}{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q[NP]V{I|L}{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]K{I|L}{I|L};[K{I|L}]{I|L}[MD][NP]V{I|L}{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{I|L}Y{M(Oxidation (M))|F}{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QY{M(Oxidation (M))|F}{I|L};[Y{I|L}][VP][Y{M(Oxidation (M))|F}]K{I|L}{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[Y{M(Oxidation (M))|F}]K{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L}K{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]{I|L}Y{M(Oxidation (M))|F}{I|L} 4.8814;2.9568;1.8708;1.7219;1.6499;1.4974;1.1825;0.91636;0.91636;0.85245 +;-;-;-;-;-;-;-;-;- + 1630 NaN NaN 308393.1 NaN 16459 3823 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20285 82.7 NaN 130940 35 0 27072 0.261 + 33559 YILEQNSSII 10 52 590.3156375255153 1178.6167221178305 2 590.8157958984375 MULTI HCD FTMS 0 0 0 20281 70201.6953125 0.25805094568149584 6 -0.17053985595703125 4 Unmodified _YILEQNSSII_ REV__ENSG00000183735|ENST00000331710|TBK1 8.745405648335112 0.42901288225909884 1 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L} 11 -1 + 21.77 0 0 1.8471 1.8471 79.143 0 0 0 3.81115515004549 8.582367697242116 3.81115515004549 1.0914446942506792 0 0 0 0 0 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L};[Y{I|L}]{I|L}S{[QG]|[NA]}E[SG]{I|L}{I|L};[Y{I|L}]{I|L}T[NG]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}S{[QG]|[NA]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}T{[WN]|[YH]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}S[WQ]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 1.8471;1.7545;1.2892;1.1965;0.73493;0.64233 -;-;-;-;-;- 109 NaN NaN 96800.7 NaN 16460 3823 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20286 82.703 NaN 189350 35 0 13136 0.261 + 33772 YLFPDQQI 8 66 512.2614566675062 1022.5083604018124 2 512.2618408203125 MULTI HCD FTMS 0 0 0 20281 27399.013671875 0.16515100521493242 12 -0.3511199951171875 5 Unmodified _YLFPDQQI_ ENST00000390340.2_1_7:38331389-38331587:-|nuORF 8.593279151180031 0.5292430274356741 1 [Y{I|L}]VVT[WE]N 8 6 + 18.874 0 0 1.8458 1.8458 86.422 0 0 0 5.430599746173218 6.682437647924221 5.430599746173218 18.87394998465425 0 0 1.3979400086720375 0 0 [Y{I|L}]VVT[WE]N 1.8458 - 140 NaN NaN 103581.8 NaN 16461 3823 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20288 82.708 NaN 1183600 35 0 80714 0.327 -1 0 94 426.24574974605105 850.4769465589021 2 426.2459716796875 MULTI HCD FTMS 0 0 0 20287 1133023 0.6634057685415184 2 -0.06903076171875 1 NaN NaN 1 Q[{M(Oxidation (M))|F}V] 3 -1 10.385 0 0 1.2211 0 0 458.27218365004046 0 458.27218365004046 0 0.4241650017117937 0 0 0 0.6203715150305281 0 0 0 Q[{M(Oxidation (M))|F}V] 1.2211 - 59 NaN NaN 258640.5 NaN 16462 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20289 82.712 NaN 388930 35 0 78673 0.261 + 22923 QYSPLLAAF 9 51 505.27124426423137 1008.5279355952628 2 505.2713928222656 MULTI HCD FTMS 0 0 0 20287 145366.265625 0.1604913407097083 7 -0.20676422119140625 2 Unmodified _QYSPLLAAF_ ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1 25.399314129420986 0.14091189997036632 1 AA{M(Oxidation (M))|F} 3 6 40.005 0 0 3.9667 0 0 701.3754249041616 0 701.3754249041616 0 33.01538440272459 0 0 0 1.3807196863200843 0 0 0 + AA{M(Oxidation (M))|F} 3.9667 + + 56 NaN NaN 142542.2 NaN 16463 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20290 82.716 NaN 590510 35 0 66191 0.261 -1 0 97 566.2978883914894 1130.5812238497788 2 566.2976684570312 MULTI HCD FTMS 0 0 0 20287 205843.78125 0.4322472687613627 85 -1.9380035400390625 3 NaN NaN 1 [YK]KNW{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 [YK] + + 41.86 5.2288 1.7959 3.7025 3.7025 59.782 0 0 0 0 27.1669877129645 0 0 0 1.8494850021680094 0 0 0 [YK]KNW{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.7025 - 807 + NaN NaN 179978.7 NaN 16464 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20291 82.719 NaN 471570 35 0 31314 0.261 -1 FPTVVIYVM 9 89 542.7909082805446 1083.5672636278891 2 542.8080444335938 MULTI HCD FTMS 0 0 0 20287 75591.21875 0.15617956874271496 18 -0.5351181030273438 4 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 30.224811164608877 0.11021837014094292 1 T{I|L}{[NV]|[RG]}V{M(Oxidation (M))|F} 6 -1 41.445 0 0 3.8249 0 0 392.20210463691564 0 392.20210463691564 0 18.025012804190577 0 0 0 1 0 0.9049471895720985 0.6989700043360187 T{I|L}{[NV]|[RG]}V{M(Oxidation (M))|F} 3.8249 - 1138 NaN NaN 156124.9 NaN 16465 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20292 82.723 NaN 115780 35 0 23516 0.261 + 34102 YNLWKEFRS 9 46 621.8170285860915 1241.619504238983 2 622.3158569335938 MULTI HCD FTMS 0 0 0 20287 64600.6015625 0.1711650691712573 94 -2.1055984497070312 5 Unmodified _YNLWKEFRS_ ENSG00000101670|ENST00000261292|LIPG 7.910154910731844 0.2910521888787154 1 [YN]{I|L} 3 6 31.254 0 0 2.5172 0 0 0 848.4067411376735 848.4067411376735 20.79689690656103 0 0 0 0 0 1.6989700043360187 0 0.3807196863200844 + [YN]{I|L} 2.5172 + + 29 NaN NaN 119138.5 NaN 16466 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20293 82.726 NaN 82700 35 0 12026 0.263 + 10842 IVDCITESL 9 39 496.7504504008007 NaN 0 496.7501220703125 PEAK HCD FTMS 0 0 0 20287 24892.478515625 0.5116532967184285 1 -0.032867431640625 6 Unmodified _IVDCITESL_ ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP 15.847184025352803 0.21527282152051216 1 S 1 8 16.237 0 0 1.6377 0 0 131.09460431998008 770.3371211626488 901.431725482629 0 0 0 0 0 0.5 0 0.4247425010840047 0 + S 1.6377 + + 2 + NaN NaN 100915.2 NaN 16467 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20294 82.729 NaN 323560 35 0 27111 0.261 + 33981 YLVCESELIE 10 68 599.2871046658174 1196.5596563984348 2 599.2857055664062 MULTI HCD FTMS 0 0 0 20287 34686.00390625 0.38900775262806225 5 -0.15100860595703125 7 Unmodified _YLVCESELIE_ REV__ENSG00000259571|ENST00000560104|BLID 24.020572477871973 0.2864316864133941 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}MHE{I|L}E{I|L} 8 -1 29.691 0 0 2.4813 0 0 132.08602513347188 0 132.08602513347188 0 13.526909627198403 0 0 0 1.3539171939081172 0 0.7302046884880937 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}MHE{I|L}E{I|L} 2.4813 - 394 + NaN NaN 126611.2 NaN 16468 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20295 82.733 NaN 63984 35 0 9181.7 0.264 + 3978 ERCFYKFIN 9 32 407.20398829418485 NaN 0 407.203857421875 PEAK HCD FTMS 0 0 0 20287 47107.33984375 0.6681213245506856 -29 0.789886474609375 8 Unmodified _ERCFYKFIN_ REV__ENST00000498605.1_1_15:44093641-44093782:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113029 NaN 16469 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20296 82.736 NaN 110880 35 0 6405.1 0.261 -1 MVKMPYQCF 9 50 581.7560522828502 1161.4975516325003 2 581.7561645507812 MULTI HCD FTMS 0 0 0 20287 46233.19140625 1 0 0 9 Oxidation (M) _MVKM(Oxidation (M))PYQCF_ ALDH1L2|p.E436K|1|0.32|ENSG00000136010|chr12:105052913-105052913|C/T|missense_variant;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2;nc|ENSG00000136010|Q3SY69-3|ALDH1L2 7.289230182591677 0.29575926068275815 1 ST{M(Oxidation (M))|F} 3 -1 13.984 0 0 1.204 0 0 165.99952975766286 657.3347872369749 823.3343169946377 0 0 0 0 0 0 0 0.3807196863200844 0 ST{M(Oxidation (M))|F} 1.204 - 12 + NaN NaN 100763.2 NaN 16470 3824 20287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20298 82.741 NaN 353800 35 0 46171 0.327 + -1 MEHEPCTPF 9 55 574.2311912801802 1146.4478296271602 2 574.2315673828125 MULTI HCD FTMS 0 0 0 20297 123256.65625 0.3479610530511378 8 -0.23288726806640625 1 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 7.910154910731844 0.2910521888787154 1 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DTP{M(Oxidation (M))|F} 8 -1 34.334 0 0 2.9948 0 0 165.97502428703302 0 165.97502428703302 0 27.34427538256881 0 0 0 1 0 0 0 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DTP{M(Oxidation (M))|F} 2.9948 - 199 + NaN NaN 140840.3 NaN 16471 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20299 82.745 NaN 149720 35 0 13116 0.263 + 26515 SVKGSPIDA 9 59 437.2367066198913 872.4588603065827 2 437.23687744140625 MULTI HCD FTMS 0 0 0 20297 64277.2734375 0.32321830795354795 5 -0.14775848388671875 2 Unmodified _SVKGSPIDA_ REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1 6.2057823575117 0.30397260197431997 1 P 1 -1 10.242 0 0 1.174 0 0 458.2415884333389 314.1351412408813 772.3767296742202 0 0 0 0 0 0.3252574989159953 0 0 0 P 1.174 + + 94 + NaN NaN 111589.2 NaN 16472 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20300 82.749 NaN 148720 35 0 23273 0.261 + 8120 GLLYLQLGI 9 40 495.3051441006572 988.5957352681144 2 495.3052673339844 MULTI HCD FTMS 0 0 0 20297 42352.14453125 0.41936926368015803 1 -0.036163330078125 3 Unmodified _GLLYLQLGI_ ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 16.942295170755138 0.21397866736869717 1 Q{[VA]|[{I|L}G]}{I|L} 4 5 26.198 0 0 2.65 0 0 559.3372531744196 0 559.3372531744196 0 26.197887582883936 0 0 0 1 0 0 0 + Q{[VA]|[{I|L}G]}{I|L} 2.65 + + 5 NaN NaN 100930 NaN 16473 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20301 82.752 NaN 674420 35 0 173770 0.261 + 19937 NYFSKLWLL 9 79 592.3287946828616 1182.643036432523 2 592.3474731445312 MULTI HCD FTMS 0 0 0 20297 10792.740234375 0.270846266933029 -1 0.032867431640625 4 Unmodified _NYFSKLWLL_ ENSG00000100982|ENST00000372409|PCIF1 20.41453444215458 0.18397929046831515 1 [YN]{M(Oxidation (M))|F} 3 6 36.695 0 0 3.1028 0 0 0 755.4451353917606 755.4451353917606 10.066212630749828 0 0 0 0 0.9247425010840047 2 0 0 + [YN]{M(Oxidation (M))|F} 3.1028 + + 148 NaN NaN 176948.9 NaN 16474 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20302 82.755 NaN 189830 35 0 38413 0.261 + 6473 FPIPEEYTF 9 52 571.7740704404392 1141.5335879476784 2 571.7732543945312 MULTI HCD FTMS 0 0 0 20297 45143.91796875 0.08554214992926189 23 -0.6761245727539062 5 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 16.942295170755138 0.21397866736869717 1 {I|L}NT{M(Oxidation (M))|F} 4 6 38.175 0 0 3.3442 0 0 648.2779859963097 0 648.2779859963097 0 10.728050365394424 0 0 0 0.5 0 0.4247425010840047 0 {I|L}NT{M(Oxidation (M))|F} 3.3442 - 60 + NaN NaN 108815.1 NaN 16475 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20303 82.759 NaN 191360 35 0 37344 0.261 + 11668 IYVSNQNYVI 10 46 606.8180804484759 1211.6216079637518 2 606.8175048828125 MULTI HCD FTMS 0 0 0 20297 57087.73046875 1 0 0 6 Unmodified _IYVSNQNYVI_ REV__ENSG00000221937|ENST00000408947|TAS2R40 24.020572477871973 0.2864316864133941 1 V{I|L} 2 -1 18.826 0 0 1.5538 0 0 981.4608199727588 0 981.4608199727588 0 11.593793813122062 0 0 0 0.3252574989159953 0 0 0 V{I|L} 1.5538 + + 39 NaN NaN 123257.9 NaN 16476 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20304 82.762 NaN 120090 35 0 17368 0.261 + 11830 KEMVPRSVKM 10 40 602.832715351723 NaN 0 602.8162841796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KEMVPRSVKM_ REV__ENSG00000154783|ENST00000285046|FGD5;REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5 2.498486711656943 0.3380459306859131 1 T 1 -1 6.9897 0 0 0.58071 0 0 166.11748023136744 933.4623135246242 1099.5797937559917 0 0 0 0 0 0 0 0 0 T 0.58071 - 4 + NaN NaN 95927.4 NaN 16477 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20305 82.765 NaN 117660 35 0 7935.8 0.261 + 20633 PFESCPIPTF 10 60 569.2706374572556 NaN 0 569.283203125 PEAK HCD FTMS 0 0 0 20297 8785.7080078125 0.43028949260403876 2 -0.0689697265625 8 Unmodified _PFESCPIPTF_ REV__ENSG00000130559|ENST00000389532|CAMSAP1;REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF;REV__nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;REV__nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 9.38312468134398 0.33215363477037435 1 DQ 2 -1 12.391 0 0 1.0902 0 0 130.09729190494232 760.3332613580686 890.430553263011 0 0 0 0 0 0 0 0 0.3807196863200844 DQ 1.0902 - 117 + NaN NaN 99228.8 NaN 16478 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20306 82.769 NaN 94448 35 0 10997 0.262 + 2436 DPTFSLMF 8 36 479.22492876557055 NaN 0 479.2754821777344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _DPTFSLMF_ ATAD5|p.G1347D|1|0.12|ENSG00000176208|chr17:30879450-30879450|G/A|missense_variant;ENSG00000176208|ENST00000321990|ATAD5 13.50788311687929 0.38822285293237185 1 {M(Oxidation (M))|F}T 2 7 12.078 0 0 1.2629 0 0 496.23731983407237 209.05690942935783 705.2942292634302 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}T 1.2629 - 5 + NaN NaN 104721.1 NaN 16479 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20307 82.772 NaN 56197 35 0 13349 0.261 -1 CYYFVIKEF 9 29 634.8056704536384 1267.5967879740767 2 634.8069458007812 MULTI HCD FTMS 0 0 0 20297 18346.451171875 0.29636565708525137 10 -0.2987213134765625 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))YYFVIKEF_ ENSG00000135898|ENST00000650999|GPR55 6.723162845929126 0.3000504726104499 1 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.9893 0 0 973.4743224976329 0 973.4743224976329 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.9893 + + 4 NaN NaN 104203.8 NaN 16480 3825 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20309 82.777 NaN 891830 35 0 48186 0.327 -1 0 92 531.8170281056758 1061.6195032781516 2 531.8174438476562 MULTI HCD FTMS 0 0 0 20308 855312.1875 0.8339451574063681 3 -0.08197784423828125 1 NaN NaN 1 D 1 -1 10.995 0 0 1.0357 0 0 61.05290253859784 882.4937765341213 943.5466790727191 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 1.0357 - 97 + NaN NaN 217187.6 NaN 16481 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20310 82.781 NaN 795000 35 0 87409 0.261 + 11229 IYLDLPQNF 9 65 561.7947856164718 1121.5750182997435 2 561.7791137695312 MULTI HCD FTMS 0 0 0 20308 79845.953125 0.5937201477962204 2 -0.06241607666015625 2 Unmodified _IYLDLPQNF_ ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF 12.531546534597751 0.2520865569484384 1 T{I|L}Y{[CP]|[EA]}{I|L}T{M(Oxidation (M))|F} 8 6 43.621 0 0 3.8892 0 0 165.11208498320065 0 165.11208498320065 0 19.975475376234467 0 0 0 0 0 0.8494850021680094 0 T{I|L}Y{[CP]|[EA]}{I|L}T{M(Oxidation (M))|F} 3.8892 - 1264 + NaN NaN 201739.5 NaN 16482 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20311 82.785 NaN 538960 35 0 41855 0.261 -1 0 112 553.8298338500571 1105.645114766914 2 553.8301391601562 MULTI HCD FTMS 0 0 0 20308 328994.75 0.8430041470252161 2 -0.06241607666015625 3 NaN NaN 1 [Y{I|L}]V[QT]T{M(Oxidation (M))|F}ST 9 -1 18.92 0 0 1.7112 0 0 0 62.10077010549336 62.10077010549336 5.425478464385819 0 0 0 0 0 0.8239087409443188 0.8703715150305281 0.535666875892183 [Y{I|L}]V[QT]T{M(Oxidation (M))|F}ST 1.7112 - 938 NaN NaN 171823 NaN 16483 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20312 82.788 NaN 347900 35 0 53088 0.261 + -1 YVEAMIDY 8 66 510.2228889475405 1018.4312249618811 2 510.22296142578125 MULTI HCD FTMS 0 0 0 20308 227793.875 0.64286881572912 3 -0.08197784423828125 4 Oxidation (M) _YVEAM(Oxidation (M))IDY_ REV__ENSG00000162409|ENST00000371244|PRKAA2 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.434 0 0 853.3516789187155 0 853.3516789187155 0 2.2969624387961556 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.434 + + 41 + NaN NaN 132921.5 NaN 16484 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20313 82.792 NaN 299190 35 0 51593 0.261 + -1 CLDRPDLL 8 60 501.2582689789679 1000.5019850247359 2 501.2705383300781 MULTI HCD FTMS 0 0 0 20308 10126.1953125 0.05939204570448247 -7 0.19387054443359375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))LDRPDLL_ REV__ENSG00000177082|ENST00000434634|WDR73;REV__ENST00000558608.1_1_15:85186703-85189170:-|nuORF;REV__ENST00000559015.5_1_15:85186703-85191289:-|nuORF;REV__ENST00000559126.5_1_15:85186703-85196938:-|nuORF;REV__ENST00000560966.5_1_15:85188615-85189170:-|nuORF 5.230669730166228 0.5342319408533849 1 {I|L}D[NP]AD{I|L}{I|L} 8 -1 25.111 0 0 2.5098 0 0 131.07088280172997 0 131.07088280172997 0 11.527581182372238 0 0 0 0 0 0.5 0.4247425010840047 {I|L}D[NP]AD{I|L}{I|L} 2.5098 - 97 + NaN NaN 123827.8 NaN 16485 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20314 82.795 NaN 558270 35 0 58563 0.261 + 6700 FPNVEIVTI 9 73 516.2922658211872 1030.5699787091744 2 516.7792358398438 MULTI HCD FTMS 0 0 0 20308 101939.3203125 0.6792831400229103 -5 0.134185791015625 6 Unmodified _FPNVEIVTI_ ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 49.55428908609986 0.03219431099695407 1 [{I|L}T]E{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}VT{I|L} 9 4 + 50.812 0 0 4.9305 4.9305 87.191 0 0 0 0.647124887093824 27.71311825853337 0.647124887093824 10.268024924119672 0 1.3494850021680094 1.3979400086720375 0.3494850021680094 0 [{I|L}T]E{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}VT{I|L};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}VT{I|L};[{I|L}T][WP]{[DS]|[MA]|[CV]|TT}VT{I|L};{[QG]|[NA]}RR{[DS]|[MA]|[CV]|TT}VT{I|L} 4.9305;3.9341;3.8673;2.5552 -;-;-;- 391 NaN NaN 178525.8 NaN 16486 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20315 82.798 NaN 444980 35 0 46995 0.261 + 33970 YLTNFFTKY 9 72 598.8044235741 NaN 0 598.7920532226562 PEAK HCD FTMS 0 0 0 20308 10743.1171875 0.3164062580892327 3 -0.08197784423828125 7 Unmodified _YLTNFFTKY_ REV__ENSG00000141698|ENST00000435506|NT5C3B;REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF;REV__nc|ENSG00000141698|Q969T7-2|NT5C3B 9.38312468134398 0.24977752951804 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}M 6 -1 12.396 0 0 1.0368 0 0 131.11954535610158 263.1186617486938 394.2382071047954 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}M 1.0368 - 567 + NaN NaN 164090.4 NaN 16487 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20316 82.802 NaN 89399 35 0 13101 0.261 + 24464 RYLDLILNDF 10 33 641.345103977338 1280.675655021476 2 641.3465576171875 MULTI HCD FTMS 0 0 0 20308 88476.5234375 0.1294957514397647 7 -0.19672393798828125 8 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 14.957161354070239 0.3712077760547347 1 {I|L}{I|L}ND{M(Oxidation (M))|F} 5 5 42.563 0 0 3.3235 0 0 660.3657704084 0 660.3657704084 0 42.562893943202624 0 0 0 1 0 0 0 + {I|L}{I|L}ND{M(Oxidation (M))|F} 3.3235 + + 17 NaN NaN 98416.7 NaN 16488 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20317 82.805 NaN 95257 35 0 9920 0.261 + -1 GQFCCYCCCC 10 44 595.1548910780936 NaN 0 595.1543579101562 PEAK HCD FTMS 0 0 0 20308 23314.69921875 0.47550874955544764 36 -1.0521163940429688 9 Carbamidomethyl (C) _GQFC(Carbamidomethyl (C))CYCCCC_ REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF 0 0.34018428902965525 1 {I|L} 1 -1 6.9897 0 0 0.58821 0 0 129.8387605723995 942.3457125299436 1072.1844731023432 0 0 0 0 0 0 0 0 0 {I|L} 0.58821 - 4 + NaN NaN 95688.6 NaN 16489 3826 20308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20319 82.81 NaN 3628200 35 0 441220 0.327 + 15153 LMSLIINTF 9 105 534.2939096770834 1066.5732664209668 2 534.2941284179688 MULTI HCD FTMS 0 0 0 20318 2190575 0.6383629908431341 4 -0.10492706298828125 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 206.74871869215147 9.242385646021313E-18 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 94.355 0 0 8.8465 8.8465 93.663 0 0 0 4.762036441594191 19.431890546242343 4.762036441594191 9.731975075880328 0 2.6747425010840047 0 2.094187677400525 0.7614393726401688 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};[VP][YT]{I|L}KS{M(Oxidation (M))|F}{I|L} 8.8465;7.9341;7.2693;6.3568;5.9298;5.6584;5.5848;5.2422;5.1687;5.0717 +;-;-;-;-;-;-;-;-;- + 2721 NaN NaN 596914.4 NaN 16490 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20320 82.814 NaN 1280300 35 0 64316 0.261 -1 0 123 545.316932783597 1088.619312633994 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20318 755551.9375 0.9700074229995193 2 -0.04917144775390625 2 NaN NaN 1 KS{I|L}{I|L}{I|L}C(Carbamidomethyl (C)) 6 -1 22.089 0 0 2.029 0 0 132.07806615137525 239.09234033756096 371.17040648893624 0 0 0 0 0 0 0 0.6109243748081782 0 KS{I|L}{I|L}{I|L}C(Carbamidomethyl (C)) 2.029 - 961 + NaN NaN 271979.7 NaN 16491 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20321 82.818 NaN 372230 35 0 25394 0.262 + 21174 PPSKRARG 8 74 434.7589549485442 867.5033569638885 2 434.7591247558594 MULTI HCD FTMS 0 0 0 20318 316578.84375 0.21793440431340697 7 -0.20013427734375 3 Unmodified _PPSKRARG_ ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP 4.75600775471527 0.5349361699807423 1 A 1 7 8.2268 0 0 0.94833 0 0 61.05096098654196 732.4007052057249 793.4516661922669 0 0 0 0 0 0.4247425010840047 0 0 0 + A 0.94833 + + 14 + NaN NaN 145025.5 NaN 16492 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20322 82.821 NaN 681340 35 0 121800 0.261 + 6392 FPHANIWDIL 10 93 613.3221344043509 1224.6297158755017 2 613.3218994140625 MULTI HCD FTMS 0 0 0 20318 248204.78125 0.80122572342609 1 -0.02960968017578125 4 Unmodified _FPHANIWDIL_ ENSG00000102595|ENST00000376747|UGGT2 42.312485326615175 0.12533928745458864 1 {NN|[MP]|[D{I|L}]|[EV]}W[HK]WD{I|L}{I|L} 9 5 + 69.886 0 0 5.7067 5.7067 89.783 0 0 0 15.228787452803374 16.478174818886373 15.228787452803374 15.228787452803374 0 1 1.6989700043360187 0 1.055462187404089 {NN|[MP]|[D{I|L}]|[EV]}W[HK]WD{I|L}{I|L};[WD]{I|L}[HK]WD{I|L}{I|L};[W{I|L}]D[HK]WD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}W[HK]{I|L}DW{I|L};{NN|[MP]|[D{I|L}]|[EV]}W{I|L}[HK]DW{I|L};[WD]{I|L}[HK]{I|L}DW{I|L};[W{I|L}]D[HK]{I|L}DW{I|L};[WD]{I|L}{I|L}[HK]DW{I|L};[W{I|L}]D{I|L}[HK]DW{I|L} 5.7067;4.4632;4.2174;3.8662;2.7679;2.6227;2.3769;1.5243;1.2785 -;-;-;-;-;-;-;-;- 700 NaN NaN 184853.5 NaN 16493 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20323 82.825 NaN 394700 35 0 25683 0.261 + 34602 YPNSWFRF 8 77 558.7666469777563 1115.5187410223125 2 558.7666625976562 MULTI HCD FTMS 0 0 0 20318 144923.546875 0.21614360905094127 10 -0.2855377197265625 5 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 24.67388899826682 0.4122521268485776 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DGY{M(Oxidation (M))|F} 9 -1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} + + 77.159 23.724 9.1203 6.9169 6.9169 64.961 0 0 0 0 51.934589278552124 0 0 0 2.5356668758921828 0 1.0356668758921828 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DGY{M(Oxidation (M))|F} 6.9169 - 1311 + NaN NaN 149796.7 NaN 16494 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20324 82.828 NaN 537490 35 0 268520 0.261 + 10531 IPFIHLPEI 9 59 539.8184050522059 1077.6222571712117 2 540.330078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _IPFIHLPEI_ ENSG00000163053|ENST00000295190|SLC16A14;nc|ENSG00000163053|Q7RTX9-2|SLC16A14 12.531546534597751 0.2520865569484384 1 E{I|L} 2 7 21.454 0 0 1.9908 0 0 817.4832630841812 0 817.4832630841812 0 11.989700043360187 0 0 0 0.3494850021680094 0 0 0 + E{I|L} 1.9908 + + 41 NaN NaN 160074.3 NaN 16495 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20325 82.831 NaN 283290 35 0 22314 0.261 + 28896 TWFTAGAKLLF 11 65 627.8474905822936 1253.6804282313872 2 627.8477172851562 MULTI HCD FTMS 0 0 0 20318 135059.125 0.09747540071690641 24 -0.6942062377929688 7 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 79.42699986076722 0.00619153599879033 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 75.328 0 0 6.0085 6.0085 87.268 0 0 0 7.269987279362624 66.03585325153396 7.269987279362624 9.164539485499262 0 2.6677353201839438 0 1.579689690656103 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAQK{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F} 6.0085;5.2775;5.1895;4.4585;4.16;3.3318 -;+;-;-;+;- + 386 NaN NaN 125154.6 NaN 16496 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20326 82.834 NaN 533510 35 0 78040 0.262 -1 LLSCWALLG 9 77 516.7793236449596 1031.5440943567191 2 516.2923583984375 MULTI HCD FTMS 0 0 0 20318 20769.193359375 0.32083757166238264 3 -0.07878875732421875 8 Carbamidomethyl (C) _LLSC(Carbamidomethyl (C))WALLG_ ENSG00000168928|ENST00000303037|CTRB2 28.486842064014134 0.11819662193267319 1 [{I|L}T]WW{I|L}VTN 8 -1 + 44.882 0 0 4.351 4.351 86.433 0 0 0 3.634993639681312 7.496140821749215 3.634993639681312 10.791812460476251 0 0 1.2218487496163564 0.4247425010840047 0 [{I|L}T]WW{I|L}VTN;[{I|L}T]V{I|L}WWTN;{[TV]|[{I|L}S]}{I|L}{I|L}WWTN;[{I|L}T]VC(Carbamidomethyl (C))WA{I|L}{[VA]|[{I|L}G]};{[TV]|[{I|L}S]}{I|L}C(Carbamidomethyl (C))WA{I|L}{[VA]|[{I|L}G]};[{I|L}T]V{[QD]|[EN]|[WG]|[KD]|[RS]}CA{I|L}{[VA]|[{I|L}G]};[{I|L}T]E[C(Carbamidomethyl (C))R]A{I|L}{[VA]|[{I|L}G]};{[TV]|[{I|L}S]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}CA{I|L}{[VA]|[{I|L}G]};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VCA{I|L}{[VA]|[{I|L}G]};[{I|L}T]E{[NV]|[RG]}CA{I|L}{[VA]|[{I|L}G]} 4.351;3.3048;3.0732;2.7598;2.5282;2.282;2.1113;2.0504;2.0504;1.869 -;-;-;-;-;-;-;-;-;- 624 NaN NaN 169964.9 NaN 16497 3827 20318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20328 82.839 NaN 1643800 35 0 77742 0.327 + 23882 RSSKQLVDI 9 112 523.3036148573681 1044.592676781536 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20327 1873703.25 0.9491028822801933 -1 0.02960968017578125 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 1 Q 1 8 9.732 0 0 0.93165 0 0 502.2990535338884 411.2237091922372 913.5227627261256 0 0 0 0 0 0.4247425010840047 0 0 0 + Q 0.93165 + + 57 + NaN NaN 335436.1 NaN 16498 3828 20327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20329 82.844 NaN 1905700 35 0 202130 0.261 -1 SYVGLVYMF 9 94 547.76470954321 1093.5148661532198 2 547.775634765625 MULTI HCD FTMS 0 0 0 20327 49725.0546875 0.5225622797772446 -9 0.25628662109375 2 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 32.116972079565 0.101532291542178 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPTT 9 -1 69.126 0 0 6.3215 0 0 0 60.97310604424834 60.97310604424834 4.246403842227821 0 0 0 0 0 2 1.7689301784845295 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPTT 6.3215 - 4313 NaN NaN 376257.7 NaN 16499 3828 20327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20330 82.847 NaN 1241300 35 0 169340 0.261 + 12876 KYFPYLVLL 9 95 578.3442384743402 1154.6739240154802 2 578.344482421875 MULTI HCD FTMS 0 0 0 20327 468087.78125 0.6761594573971226 5 -0.134307861328125 3 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 74.42276476219924 0.007657080072768255 1 [YK]{M(Oxidation (M))|F}PY{I|L}V{I|L}{I|L} 9 0 + 57.454 0 0 4.9758 4.9758 90.478 0 0 0 5.132192780232785 29.072107198995088 5.132192780232785 35.78152000635284 0 2.368415180652539 0 0 0.25 + + [YK]{M(Oxidation (M))|F}PY{I|L}V{I|L}{I|L};[K{I|L}]{I|L}[MD][NP]V{I|L}{I|L} 4.9758;1.8769 +;- + 1283 NaN NaN 290009.6 NaN 16500 3828 20327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20331 82.851 NaN 392660 35 0 42935 0.261 -1 FLPCFFLPQ 9 73 584.7976087160688 1167.5806644989375 2 585.8134765625 MULTI HCD FTMS 0 0 0 20327 21090.431640625 0.5437271208442389 5 -0.134307861328125 4 Carbamidomethyl (C) _FLPC(Carbamidomethyl (C))FFLPQ_ ENST00000337672.7_2_11:57471512-57471608:-|nuORF 9.347437153973935 0.2795965555214564 1 E{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 5 -1 37.449 0 0 3.2074 0 0 0 514.2302340143186 514.2302340143186 20.124270324509457 0 0 0 0 0 0 0 0.5994850021680094 E{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 3.2074 - 269 + NaN NaN 141931.4 NaN 16501 3828 20327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20332 82.854 NaN 228820 35 0 27270 0.261 + 2498 DSFSALQVLLR 11 63 624.8510871966256 1247.687621460051 2 624.85107421875 MULTI HCD FTMS 0 0 0 20327 86436.890625 0.8345682349956751 -3 0.09857940673828125 5 Unmodified _DSFSALQVLLR_ ENST00000541916.5_1_13:49649476-49688811:+|nuORF 60.899326713953855 0.03666125830841081 1 {[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}SA[Q{I|L}]V{I|L}{I|L}R 11 0 + 59.028 0 0 4.731 4.731 84.414 0 0 0 5.862435673934279 7.891373188610764 5.862435673934279 7.891373188610764 0 2.579689690656103 0 0 0 + + {[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}SA[Q{I|L}]V{I|L}{I|L}R;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}W[C(Carbamidomethyl (C))K]{I|L}{I|L}R 4.731;4.0985 +;- + 136 + NaN NaN 122766.7 NaN 16502 3828 20327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20334 82.859 NaN 538910 35 0 63465 0.327 + 26722 SYDPLRIYLF 10 64 643.8426540790068 1285.6707552248135 2 643.8427124023438 MULTI HCD FTMS 0 0 0 20333 299922.6875 0.4781464140884693 -2 0.04917144775390625 1 Unmodified _SYDPLRIYLF_ ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENST00000480929.1_1_2:219612227-219612548:+|nuORF 74.19965305603844 0.012609120674105788 1 {[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R{I|L}Y{I|L}{M(Oxidation (M))|F} 10 2 + 83.734 0 0 6.5128 6.5128 87.844 0 0 0 8.762874945799766 16.53212513775344 8.762874945799766 8.762874945799766 0 2.4247425010840047 1.3979400086720375 1.1861818737241734 0 {[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R{I|L}Y{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D[{I|L}P]R{I|L}Y{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R{I|L}{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D[{I|L}P]R{I|L}{I|L}Y{M(Oxidation (M))|F} 6.5128;5.8313;5.5841;4.9025 -;+;-;- + 208 NaN NaN 162919 NaN 16503 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20335 82.863 NaN 304170 35 0 21761 0.264 -1 0 63 426.24574974605105 850.4769465589021 2 426.2459411621094 MULTI HCD FTMS 0 0 0 20333 317473.5625 0.185886599585292 7 -0.206817626953125 2 NaN NaN 1 Q 1 -1 8.8958 0 0 1.046 0 0 220.12937175702888 499.2753084772094 719.4046802342383 0 0 0 0 0 0.5796896906561032 0 0 0 Q 1.046 - 4 + NaN NaN 132964.5 NaN 16504 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20336 82.867 NaN 554190 35 0 55980 0.261 -1 0 82 566.2978883914894 1130.5812238497788 2 566.2982177734375 MULTI HCD FTMS 0 0 0 20333 154179.09375 0.3237576173972445 90 -1.9673309326171875 3 NaN NaN 1 [Y{I|L}]QA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 8 -1 35.323 0 0 3.1243 0 0 0 162.05807514860695 162.05807514860695 11.650378042405904 0 0 0 0 2.1677353201839438 1.6989700043360187 0 0 [Y{I|L}]QA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 3.1243 - 884 NaN NaN 178898.9 NaN 16505 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20337 82.87 NaN 336970 35 0 38864 0.261 -1 FPTVVIYVM 9 80 542.7909082805446 1083.5672636278891 2 542.8079223632812 MULTI HCD FTMS 0 0 0 20333 18937.6015625 0.03912711679956364 23 -0.6779098510742188 4 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.21397866736869717 1 GYV{M(Oxidation (M))|F} 4 -1 41.186 0 0 3.8009 0 0 599.3635946234135 0 599.3635946234135 0 24.87334396171555 0 0 0 1.4247425010840047 0 0 0 GYV{M(Oxidation (M))|F} 3.8009 - 191 + NaN NaN 130462.9 NaN 16506 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20338 82.874 NaN 65554 35 0 8878.3 0.261 + 24465 RYLDLILNDF 10 39 641.345103977338 1280.675655021476 2 641.3458862304688 MULTI HCD FTMS 0 0 0 20333 33191.38671875 0.04857948071963491 10 -0.302093505859375 5 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 14.218169984304629 0.37812005199054677 1 {I|L}{I|L}ND{M(Oxidation (M))|F} 5 5 46.938 0 0 3.6651 0 0 660.3597889630875 0 660.3597889630875 0 39.94850021680094 0 0 0 1.5 0 0 0 + {I|L}{I|L}ND{M(Oxidation (M))|F} 3.6651 + + 40 NaN NaN 93304.5 NaN 16507 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20339 82.877 NaN 164150 35 0 45327 0.264 + 21405 PVNIVNTQ 8 51 442.7447525460811 883.4749521589622 2 442.7448425292969 MULTI HCD FTMS 0 0 0 20333 18669.876953125 0.3953869863059028 3 -0.08524322509765625 6 Unmodified _PVNIVNTQ_ REV__PPP1R13B|p.R104T|1|0.27|ENSG00000088808|chr14:103778788-103778788|C/G|missense_variant 5.230669730166228 0.5342319408533849 1 H 1 -1 3.0989 0 0 0.35077 0 0 526.3387960083747 217.05396448306877 743.3927604914435 0 0 0 0 0 0 0 0 0 H 0.35077 - 4 + NaN NaN 108514.3 NaN 16508 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20340 82.88 NaN 101580 35 0 9428.2 0.261 + 26629 SWPDWALPRL 10 50 620.8271632702259 1239.6397736072518 2 620.8277587890625 MULTI HCD FTMS 0 0 0 20333 13308.560546875 0.00797078672006254 51 -1.4290924072265625 7 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 11.494710602746466 0.4035943721457025 1 S{I|L}[RP]{I|L} 5 5 26.198 0 0 2.1133 0 0 655.2724476544937 0 655.2724476544937 0 19.20818753952375 0 0 0 1 0 0 0 S{I|L}[RP]{I|L} 2.1133 - 16 NaN NaN 105610.1 NaN 16509 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20341 82.884 NaN 141180 35 0 12408 0.264 + 23000 RAGPRPGP 8 60 404.23290977101203 806.4512666088241 2 404.2337951660156 MULTI HCD FTMS 0 0 0 20333 57729.43359375 0.5042783732047621 -3 0.08197784423828125 8 Unmodified _RAGPRPGP_ ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2;REV__ENST00000574741.1_1_17:45159638-45177554:-|nuORF 2.302733041254933 0.5385759549224092 1 R 1 7 5.2423 0 0 0.65004 0 0 282.16776642862675 365.16010461978755 647.3278710484143 0 0 0 0 0 0.3252574989159953 0 0 0 + R 0.65004 + + 11 + NaN NaN 108188.9 NaN 16510 3829 20333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20343 82.889 NaN 229830 35 0 34492 0.326 -1 FPTVVIYVM 9 69 542.7909082805446 1083.5672636278891 2 542.8081665039062 MULTI HCD FTMS 0 0 0 20342 14039.6259765625 0.029007373694825492 24 -0.707489013671875 1 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.21397866736869717 1 YV{M(Oxidation (M))|F} 3 -1 30.591 0 0 2.8231 0 0 656.3903970280829 0 656.3903970280829 0 14.515698131601496 0 0 0 1.1549471895720984 0 0 0 YV{M(Oxidation (M))|F} 2.8231 + + 135 + NaN NaN 119575.3 NaN 16511 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20344 82.893 NaN 427480 35 0 25301 0.261 -1 YSFLDYVM 8 79 527.2334912381457 1052.4524295430913 2 527.2335815429688 MULTI HCD FTMS 0 0 0 20342 43347.1328125 0.3169511654529626 11 -0.3282623291015625 2 Oxidation (M) _YSFLDYVM(Oxidation (M))_ ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF 38.15118350030904 0.25467990583502337 1 [Y{M(Oxidation (M))|F}]{I|L}SDYV{M(Oxidation (M))|F} 8 -1 + 52.789 0 0 5.0158 5.0158 83.31 0 0 0 1.726307269461742 26.816380471319675 1.726307269461742 4.011007396375135 0 1.9247425010840047 0 0.28872548999643577 0 [Y{M(Oxidation (M))|F}]{I|L}SDYV{M(Oxidation (M))|F};[YT]YD[{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}V]DYV{M(Oxidation (M))|F};[YT]Y[TP]YV{M(Oxidation (M))|F} 5.0158;4.6347;4.3604;3.8275 -;-;-;- 226 NaN NaN 141739 NaN 16512 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20345 82.897 NaN 93328 35 0 12964 0.261 + 33622 YIVALQGLI 9 30 495.3051441006572 988.5957352681144 2 495.30560302734375 MULTI HCD FTMS 0 0 0 20342 16928.650390625 0.16762682806243465 6 -0.1772003173828125 3 Unmodified _YIVALQGLI_ REV__ENSG00000064270|ENST00000262429|ATP2C2;REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF;REV__nc|ENSG00000064270|O75185-2|ATP2C2;REV__nc|ENSG00000064270|O75185-3|ATP2C2 7.289230182591677 0.29575926068275815 1 Q{[VA]|[{I|L}G]}{I|L} 4 -1 21.198 0 0 2.1442 0 0 559.3376831316814 0 559.3376831316814 0 15.713337517843655 0 0 0 0.5 0 0 0 Q{[VA]|[{I|L}G]}{I|L} 2.1442 + + 3 NaN NaN 101352.7 NaN 16513 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20346 82.9 NaN 96866 35 0 14480 0.261 + 18134 MPDFDLNL 8 32 482.725886134267 963.437219335334 2 482.7258605957031 MULTI HCD FTMS 0 0 0 20342 56940.375 0.7735151101115544 -1 0.0296173095703125 4 Unmodified _MPDFDLNL_ ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 1 {I|L}N{I|L} 3 5 34.693 0 0 3.6009 0 0 605.2157202140341 0 605.2157202140341 0 25.74031267727719 0 0 0 0.4247425010840047 0 0 0.4247425010840047 + {I|L}N{I|L} 3.6009 + + 8 NaN NaN 108162 NaN 16514 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20347 82.903 NaN 240590 35 0 32065 0.261 + 29597 VAKKLVKAP 9 53 477.3288714669404 952.6431900006809 2 477.3286437988281 MULTI HCD FTMS 0 0 0 20342 19423.046875 0.32022117885418355 7 -0.20674896240234375 5 Unmodified _VAKKLVKAP_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 0.5247636613948944 0.34703895399870666 1 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.73372 0 0 560.487957308511 229.09792505435783 789.5858823628688 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.73372 - 17 + NaN NaN 119827.7 NaN 16515 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20348 82.907 NaN 130490 35 0 11889 0.261 + 26399 SSTFTLLCL 9 53 492.7568848032538 983.4992166733076 2 492.75640869140625 MULTI HCD FTMS 0 0 0 20342 36082.640625 0.5773315955552031 -1 0.0296173095703125 6 Unmodified _SSTFTLLCL_ REV__ENSG00000017427|ENST00000337514|IGF1;REV__nc|ENSG00000017427|P05019-3|IGF1;REV__nc|ENSG00000017427|P05019-4|IGF1;REV__nc|ENSG00000017427|P05019|IGF1 38.15118350030904 0.07383188072201104 1 {I|L}C{I|L} 3 -1 36.198 0 0 3.6805 0 0 636.3129372895445 0 636.3129372895445 0 22.068174985992783 0 0 0 1 0 0 0 {I|L}C{I|L} 3.6805 + + 232 NaN NaN 97875.6 NaN 16516 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20349 82.91 NaN 64965 35 0 7489 0.261 + 21982 QETINNEWFK 10 52 436.87976719839713 1307.6174721953914 3 437.21514892578125 MULTI HCD FTMS 0 0 0 20342 17061.546875 0.42184869485683824 -14 0.39070892333984375 7 Unmodified _QETINNEWFK_ tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 1.7422754331352037 0.46608156381052757 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 97423.8 NaN 16517 3830 20342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20351 82.915 NaN 851740 35 0 48525 0.327 -1 0 94 531.8170281056758 1061.6195032781516 2 531.8173217773438 MULTI HCD FTMS 0 0 0 20350 873829.375 0.8519997567328984 8 -0.246337890625 1 NaN NaN 1 A 1 -1 6.2371 0 0 0.58751 0 0 105.07883193333187 882.4883516900999 987.5671836234318 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.58751 - 151 + NaN NaN 215058.3 NaN 16518 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20352 82.919 NaN 964260 35 0 170160 0.261 + 17327 LYPSIIQEF 9 75 555.297215354268 1108.579877775336 2 555.297607421875 MULTI HCD FTMS 0 0 0 20350 474836.0625 1 0 0 2 Unmodified _LYPSIIQEF_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 110.5527297667825 0.0028521687250969148 1 [Y{I|L}]PS{I|L}{I|L}QE{M(Oxidation (M))|F} 9 0 + 81.903 0 0 7.3881 7.3881 90.495 0 0 0 2.3405113842267866 62.86175320500661 2.3405113842267866 9.208187539523749 0 2.9291746928241125 1.3010299956639813 0.6747425010840047 0 + + [Y{I|L}]PS{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}]PS{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}]PS{I|L}EQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]V[TP]EQ{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}EQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]PS{I|L}{I|L}[PS][YG] 7.3881;6.5575;6.5539;6.4825;5.7233;5.6519;4.7156;3.8815;3.81;3.6193 +;-;-;-;-;-;-;-;-;- + 648 NaN NaN 227299.2 NaN 16519 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20353 82.923 NaN 507270 35 0 101740 0.261 + 29855 VFAGVFNTF 9 70 501.2582689789679 1000.5019850247359 2 501.2584228515625 MULTI HCD FTMS 0 0 0 20350 151830.359375 0.8905136988812152 -2 0.055755615234375 3 Unmodified _VFAGVFNTF_ ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant 68.08070601005525 0.009709267492204555 1 [{M(Oxidation (M))|F}V]AR{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 8 2 [{M(Oxidation (M))|F}V]A + + 46.759 8.072 2.545 4.6735 4.6735 61.036 0 0 0 0 30.56093158795967 0 0 0 1.805462187404089 0 0.7302046884880937 0 [{M(Oxidation (M))|F}V]AR{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4.6735 - 309 + NaN NaN 159247 NaN 16520 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20354 82.926 NaN 294280 35 0 32285 0.261 + 31946 VYPAVMVLL 9 58 510.793903257783 1019.573253582366 2 510.7940979003906 MULTI HCD FTMS 0 0 0 20350 91704.2421875 0.846466492543895 -6 0.17389678955078125 4 Oxidation (M) _VYPAVM(Oxidation (M))VLL_ ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 56.04830969593885 0.023109620888794903 1 {M(Oxidation (M))|F}V{I|L}{I|L} 4 5 41.67 0 0 4.087 0 0 529.2901547543446 0 529.2901547543446 0 14.121994240389597 0 0 0 1.274227503252014 0 0 0 + {M(Oxidation (M))|F}V{I|L}{I|L} 4.087 + + 85 NaN NaN 128706.1 NaN 16521 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20355 82.929 NaN 229640 35 0 40681 0.261 + 7530 FYADHPFIFL 10 53 635.3188922894755 1268.6232316457508 2 635.3190307617188 MULTI HCD FTMS 0 0 0 20350 77528.90625 0.16769885809239723 -4 0.10492706298828125 5 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 25.399314129420986 0.2735354021946395 1 {I|L}{M(Oxidation (M))|F}{I|L} 3 7 31.198 0 0 2.4592 0 0 877.3793812482437 0 877.3793812482437 0 26.249387366083 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L} 2.4592 + + 47 NaN NaN 121835 NaN 16522 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20356 82.933 NaN 123530 35 0 35360 0.261 + 17522 LYTYKFTYN 9 41 606.8006499227157 1211.5867469122313 2 606.8193359375 MULTI HCD FTMS 0 0 0 20350 31614.248046875 0.20535306046121704 35 -1.0325851440429688 6 Unmodified _LYTYKFTYN_ tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1 4.75600775471527 0.31496297302216103 1 KM 2 8 20.969 0 0 1.7307 0 0 934.4360177855872 0 934.4360177855872 0 12.385606273598313 0 0 0 0 0 0 0 KM 1.7307 - 12 NaN NaN 106222.3 NaN 16523 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20357 82.936 NaN 116960 35 0 18985 0.261 + 24226 RYFLPPYTF 9 40 602.3132694992909 1202.6119860653816 2 602.3141479492188 MULTI HCD FTMS 0 0 0 20350 34434.2578125 0.4856498337748814 35 -1.0325851440429688 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 28.456 0 0 2.3662 0 0 579.3173925241697 0 579.3173925241697 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.3662 + + 12 NaN NaN 113215.8 NaN 16524 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20358 82.939 NaN 129250 35 0 7878.5 0.261 -1 MMFETIPMF 9 53 581.7540581680971 1161.4935634029941 2 581.7532348632812 MULTI HCD FTMS 0 0 0 20350 18537.10546875 0.5353038339178191 1 -0.02948760986328125 8 Oxidation (M) _MMFETIPM(Oxidation (M))F_ ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN;PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant 7.910154910731844 0.2910521888787154 1 M{M(Oxidation (M))|F}QT 4 -1 35.433 0 0 3.0506 0 0 0 651.2432479684908 651.2432479684908 7.95108181693919 0 0 0 0 0 0 0.3494850021680094 0 M{M(Oxidation (M))|F}QT 3.0506 - 87 + NaN NaN 104273.3 NaN 16525 3831 20350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20360 82.944 NaN 1331700 35 0 352740 0.327 + 24192 RYFILPYVI 9 69 592.3473730950082 1182.6801932568162 2 592.3475341796875 MULTI HCD FTMS 0 0 0 20359 634339.0625 0.7663142252060087 2 -0.0657196044921875 1 Unmodified _RYFILPYVI_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 26.88365393820708 0.12808753336095696 1 {I|L}WYV{I|L} 5 5 47.959 0 0 4.0551 0 0 490.2789652843699 0 490.2789652843699 0 20.017302660547536 0 0 0 1 0 0 0 {I|L}WYV{I|L} 4.0551 - 213 NaN NaN 285390.9 NaN 16526 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20361 82.949 NaN 273740 35 0 27239 0.261 + 34528 YPHFPEFFL 9 57 598.7923732934314 1195.5701936536627 2 599.2945556640625 MULTI HCD FTMS 0 0 0 20359 73908.6484375 0.5652941340267702 1 -0.02950286865234375 2 Unmodified _YPHFPEFFL_ ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF 34.10243960390752 0.09241788333544565 1 M{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7 3 40.75 0 0 3.4084 0 0 266.1412831037125 0 266.1412831037125 0 33.30275432461626 0 0 0 1.805462187404089 0 0 0 M{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.4084 - 76 NaN NaN 129991.6 NaN 16527 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20362 82.952 NaN 353610 35 0 75533 0.261 -1 0 55 562.3433286913858 1122.6721044495714 2 562.3436279296875 MULTI HCD FTMS 0 0 0 20359 35185.6328125 0.23573490015333004 9 -0.27263641357421875 3 NaN NaN 1 Y{I|L}T{M(Oxidation (M))|F} 4 -1 24.412 0 0 2.1745 0 0 580.3996508433158 0 580.3996508433158 0 17.422750325201406 0 0 0 0 0 0 0 Y{I|L}T{M(Oxidation (M))|F} 2.1745 - 89 + NaN NaN 136856.6 NaN 16528 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20363 82.956 NaN 257480 35 0 31118 0.261 + -1 MEHEPCTPF 9 63 574.2311912801802 1146.4478296271602 2 574.2308959960938 MULTI HCD FTMS 0 0 0 20359 28325.791015625 0.07996543448584209 15 -0.44321441650390625 4 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 4.3292370932331545 0.3181982124262546 1 DG 2 -1 15.573 0 0 1.3584 0 0 363.1762780612606 608.2020357721311 971.3783138333918 0 0 0 0 0 0.7614393726401688 0 0 0 DG 1.3584 - 107 + NaN NaN 116300.1 NaN 16529 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20364 82.959 NaN 120550 35 0 11296 0.261 + 31133 VTSTTFLCL 9 40 492.7568848032538 983.4992166733076 2 492.7576904296875 MULTI HCD FTMS 0 0 0 20359 34738.73828125 0.5558288099788615 1 -0.02950286865234375 5 Unmodified _VTSTTFLCL_ ENST00000515223.1_1_5:180660600-180660825:+|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}C{I|L} 3 6 36.198 0 0 3.6805 0 0 636.311780551914 0 636.311780551914 0 25.74031267727719 0 0 0 1 0 0 0 + {I|L}C{I|L} 3.6805 + + 63 NaN NaN 108626 NaN 16530 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20365 82.962 NaN 145400 35 0 41278 0.261 + 30813 VPVMLSNG 8 41 408.71830502746474 NaN 0 408.7183837890625 PEAK HCD FTMS 0 0 0 20359 37458.76953125 0.9083330025951032 1 -0.02950286865234375 6 Unmodified _VPVMLSNG_ ENSG00000182197|ENST00000378204|EXT1 1.844237919475145 0.38822285293237185 1 {I|L} 1 7 3.0989 0 0 0.38004 0 0 426.2346619574701 273.08820520572505 699.3228671631952 0 0 0 0 0 0 0 0 0 + {I|L} 0.38004 + + 1 + NaN NaN 108643.2 NaN 16531 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20366 82.965 NaN 112150 35 0 9171.8 0.261 -1 SMDLSDKALF 10 50 571.7740704404392 1141.5335879476784 2 571.7738647460938 MULTI HCD FTMS 0 0 0 20359 39937.109375 0.07567589060972627 30 -0.8848953247070312 7 Oxidation (M) _SM(Oxidation (M))DLSDKALF_ GRM5|p.T183A|1|0.12|ENSG00000168959|chr11:89047326-89047326|T/C|missense_variant 3.2813086475875832 0.45793521633868084 1 C(Carbamidomethyl (C))SQ{M(Oxidation (M))|F} 4 -1 9.7366 0 0 0.85294 0 0 601.3370069924034 0 601.3370069924034 0 4.252057161061275 0 0 0 0.3494850021680094 0 0 0 C(Carbamidomethyl (C))SQ{M(Oxidation (M))|F} 0.85294 - 15 + NaN NaN 103998.4 NaN 16532 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20367 82.969 NaN 136110 35 0 9885.8 0.261 + -1 DLYRRCAF 8 50 571.7740704404392 1141.5335879476784 2 572.2747192382812 MULTI HCD FTMS 0 0 0 20359 21237.517578125 0.06541807975762602 29 -0.8486480712890625 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))DLYRRC(Carbamidomethyl (C))AF_ REV__ENST00000529598.1_1_11:10582337-10590071:-|nuORF 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.8604 0 0 976.4549879494347 0 976.4549879494347 0 12.28470012691339 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.8604 + + 24 + NaN NaN 104835.1 NaN 16533 3832 20359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20369 82.974 NaN 2080900 35 0 246920 0.327 + 15154 LMSLIINTF 9 94 534.2939096770834 1066.5732664209668 2 534.294189453125 MULTI HCD FTMS 0 0 0 20368 1193808 0.34789169299040673 10 -0.288909912109375 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 160.51597146486608 8.986712039288196E-09 1 SN{I|L}{I|L}{[HG]|PP}T{M(Oxidation (M))|F} 8 5 84.576 0 0 7.9297 0 0 179.094530174025 0 179.094530174025 0 32.40463059526341 0 0 0 1.805462187404089 0 1.8979400086720375 1.2416440611282624 SN{I|L}{I|L}{[HG]|PP}T{M(Oxidation (M))|F} 7.9297 - 1854 NaN NaN 396987.7 NaN 16534 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20370 82.978 NaN 1246100 35 0 103640 0.261 -1 0 113 545.316932783597 1088.619312633994 2 545.3169555664062 MULTI HCD FTMS 0 0 0 20368 481949.0625 0.6187452442773456 8 -0.243133544921875 2 NaN NaN 1 ESP{M(Oxidation (M))|F}{I|L}{[DA]|[EG]}{M(Oxidation (M))|F} 8 -1 36.519 0 0 3.3546 0 0 164.21466283106275 0 164.21466283106275 0 11.873559652525913 0 0 0 0 0 1.093569022618561 0 ESP{M(Oxidation (M))|F}{I|L}{[DA]|[EG]}{M(Oxidation (M))|F} 3.3546 - 810 + NaN NaN 272743.3 NaN 16535 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20371 82.982 NaN 295330 35 0 36635 0.261 + 33294 YFPEPVTVSW 10 80 612.8001217901511 1223.5856906471022 2 613.3219604492188 MULTI HCD FTMS 0 0 0 20368 7466.529296875 0.3161887493645809 1 -0.03621673583984375 3 Unmodified _YFPEPVTVSW_ ENST00000390555.3_1_14:106135325-106136152:-|nuORF;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 27.628801355627647 0.2527626205058048 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}AYVC(Carbamidomethyl (C)){I|L} 10 8 + 44.949 0 0 3.6735 3.6735 79.837 0 0 0 8.182050884295784 28.750700828757015 8.182050884295784 0.6819517757019256 0 2.2302046884880937 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}AYVC(Carbamidomethyl (C)){I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}AYVGC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}AY{M(Oxidation (M))|F}[KP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{[QG]|[NA]}{[QN]|[E{I|L}]|[KN]}TVC(Carbamidomethyl (C)){I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{[QG]|[NA]}{[QN]|[E{I|L}]|[KN]}TVGC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVYA{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVY[KG][HN]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[PA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}TVC(Carbamidomethyl (C)){I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[PA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}TVGC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVY[KG]{[HG]|PP}C(Carbamidomethyl (C)){I|L} 3.6735;3.6178;2.7583;2.6968;2.644;2.5738;2.5055;2.4508;2.398;2.3975 -;-;-;-;-;-;-;-;-;- 805 NaN NaN 130231.3 NaN 16536 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20372 82.985 NaN 366010 35 0 55258 0.262 + 6701 FPNVEIVTI 9 63 516.2922658211872 1030.5699787091744 2 516.292236328125 MULTI HCD FTMS 0 0 0 20368 177403.796875 0.6482502767120318 5 -0.15113067626953125 4 Unmodified _FPNVEIVTI_ ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 61.60191391372663 0.015340508911304802 1 [{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}VT{I|L} 9 3 + 63.495 0 0 6.1611 6.1611 89.981 0 0 0 6.812500568595894 43.48476932435055 6.812500568595894 12.79840696594043 0 1.8807196863200843 1.5228787452803376 0.3807196863200844 0 [{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}VT{I|L};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}VT{I|L};{M(Oxidation (M))|F}A{I|L}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}[VP] 6.1611;4.9193;1.9505 -;-;- 329 NaN NaN 144585.1 NaN 16537 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20373 82.988 NaN 474260 35 0 216710 0.261 -1 MVLLKSFLL 9 64 540.3302610301862 1078.6459691271723 2 540.3303833007812 MULTI HCD FTMS 0 0 0 20368 87979.625 0.2335608424207551 -7 0.19672393798828125 5 Oxidation (M) _M(Oxidation (M))VLLKSFLL_ ENSG00000023839|ENST00000647814|ABCC2 2.0597508629832335 0.3354026079994024 1 E{M(Oxidation (M))|F}{I|L} 3 -1 11.427 0 0 1.0594 0 0 130.25785985158478 556.1734102838499 686.4312701354347 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}{I|L} 1.0594 - 50 + NaN NaN 153834.7 NaN 16538 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20374 82.992 NaN 246250 35 0 20685 0.261 + 28897 TWFTAGAKLLF 11 56 627.8474905822936 1253.6804282313872 2 627.8479614257812 MULTI HCD FTMS 0 0 0 20368 87907.875 0.06344521587709619 30 -0.8816070556640625 6 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 79.42699986076722 0.00619153599879033 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 81.808 0 0 6.5254 6.5254 88.214 0 0 0 7.269987279362624 78.7092817428875 7.269987279362624 9.164539485499262 0 3.1989700043360187 0 0.8494850021680094 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F} 6.5254;5.7944 -;+ + 256 NaN NaN 121184.4 NaN 16539 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20375 82.995 NaN 262160 35 0 14441 0.261 + 21472 PYARHYYF 8 66 558.7666469777563 1115.5187410223125 2 558.767333984375 MULTI HCD FTMS 0 0 0 20368 80518.296875 0.120087561038018 16 -0.4627685546875 7 Unmodified _PYARHYYF_ ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2 20.871210003555333 0.44023077629866025 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 9 5 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} + + 67.489 23.724 9.1203 6.05 6.05 63.367 0 0 0 0 48.06531554153912 0 0 0 2.399649864804614 0 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 6.05 - 590 + NaN NaN 123802.4 NaN 16540 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20376 82.998 NaN 121050 35 0 17484 0.261 -1 IYMDTLNIF 9 46 573.2809682998818 1144.5473836665635 2 573.28125 MULTI HCD FTMS 0 0 0 20368 18863.064453125 0.024132766162332533 37 -1.0918960571289062 8 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 24.020572477871973 0.15282392193088168 1 {I|L}N{I|L}{M(Oxidation (M))|F} 4 -1 49.68 0 0 4.3406 0 0 639.2593250959 0 639.2593250959 0 45.70107520596089 0 0 0 1.3494850021680094 0 0 0.4247425010840047 {I|L}N{I|L}{M(Oxidation (M))|F} 4.3406 + + 99 NaN NaN 103157.6 NaN 16541 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20377 83.002 NaN 116090 35 0 32927 0.261 -1 LYLWISRNM 9 32 606.3182859130688 1210.6220188929376 2 606.2998657226562 MULTI HCD FTMS 0 0 0 20368 16512.060546875 0.8274499214261832 -1 0.02950286865234375 9 Oxidation (M) _LYLWISRNM(Oxidation (M))_ ENST00000503946.1_1_5:134131747-134131804:+|nuORF 4.3292370932331545 0.3181982124262546 1 [Y{I|L}][YT]VVD 7 -1 22.464 0 0 1.8556 0 0 0 354.16886882873763 354.16886882873763 22.464169411070927 0 0 0 0 1 2 0 0 [Y{I|L}][YT]VVD 1.8556 - 11 NaN NaN 97405.7 NaN 16542 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20378 83.005 NaN 154800 35 0 16783 0.264 + 19600 NTLSLCPR 8 64 452.2406285702463 NaN 0 451.78131103515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _NTLSLCPR_ ENSG00000140853|ENST00000688547|NLRC5;ENST00000538930.5_1_16:57075247-57096263:+|nuORF;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5 10.823927491677226 0.38822285293237185 1 {I|L} 1 7 6.9897 0 0 0.77451 0 0 574.2925536719396 212.0676668756469 786.3602205475864 0 0 0 0 0 0 0 0 0 + {I|L} 0.77451 + + 15 + NaN NaN 101930.4 NaN 16543 3833 20368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20380 83.01 NaN 1545800 35 0 73186 0.327 + 23883 RSSKQLVDI 9 105 523.3036148573681 1044.592676781536 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20379 1649689.125 0.8356310976157991 5 -0.15113067626953125 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 1 Q 1 8 10.797 0 0 1.0336 0 0 546.325710912004 367.196883721889 913.5225946338929 0 0 0 0 0 0.3807196863200844 0 0 0 + Q 1.0336 + + 104 + NaN NaN 326796.4 NaN 16544 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20381 83.014 NaN 1214200 35 0 119910 0.261 + 27431 SYVGLVYMF 9 90 547.76470954321 1093.5148661532198 2 547.7756958007812 MULTI HCD FTMS 0 0 0 20379 76446.796875 0.8033819712763476 -3 0.09520721435546875 2 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 46.92087301778293 0.0358782797343276 1 T{M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 8 7 71.602 0 0 6.5478 0 0 63.99272409229099 0 63.99272409229099 0 29.60938231506843 0 0 0 1.5356668758921828 0 2.173877368056628 0.3807196863200844 T{M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 6.5478 - 3446 + NaN NaN 264417.3 NaN 16545 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20382 83.018 NaN 1044900 35 0 97163 0.261 + 11545 IYSPLLFKYF 10 75 645.8602284743139 1289.7059040154277 2 645.8604736328125 MULTI HCD FTMS 0 0 0 20379 483428.4375 0.7514733428414871 1 -0.0296173095703125 3 Unmodified _IYSPLLFKYF_ ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 148.26817274609934 2.461652908111796E-07 1 [Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 10 0 + 115.48 0 0 8.9538 8.9538 88.056 0 0 0 0.20664854281284306 0.20664854281284306 0.20664854281284306 0.20664854281284306 0 3.305462187404089 1.6989700043360187 2.1610892374447825 0 + + [Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{I|L}YSP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}{I|L}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}{I|L}YK{M(Oxidation (M))|F};{I|L}Y[TP]V{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}K{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}{I|L}KY{M(Oxidation (M))|F} 8.9538;8.9378;8.2324;8.0375;7.3161;7.2635;6.8537;6.782;6.0606;5.8657 +;+;-;-;-;-;-;-;-;- + 930 NaN NaN 247791.3 NaN 16546 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20383 83.021 NaN 490990 35 0 36308 0.261 + 12877 KYFPYLVLL 9 87 578.3442384743402 1154.6739240154802 2 578.3443603515625 MULTI HCD FTMS 0 0 0 20379 105339.3671875 0.15216421409217518 11 -0.31836700439453125 4 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 28.486842064014134 0.11819662193267319 1 V{I|L}{I|L} 3 6 34.085 0 0 2.9519 0 0 811.4263584898874 0 811.4263584898874 0 3.9998173355933453 0 0 0 0.7887254899964358 0 0 0 + V{I|L}{I|L} 2.9519 + + 921 NaN NaN 162382 NaN 16547 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20384 83.025 NaN 749080 35 0 187940 0.261 + 25585 SFTRQEFRAT 10 61 621.8170285860915 1241.619504238983 2 622.3036499023438 MULTI HCD FTMS 0 0 0 20379 22253.064453125 0.058961483705480586 104 -2.3663558959960938 5 Unmodified _SFTRQEFRAT_ REV__ENSG00000132024|ENST00000318003|CC2D1A;REV__ENST00000589138.5_1_19:14029331-14037891:+|nuORF;REV__ENST00000589224.1_1_19:14034393-14038165:+|nuORF;REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A 10.073929032068715 0.4168838835836452 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NES{M(Oxidation (M))|F}G 10 -1 59.619 0 0 4.8017 0 0 0 161.08363448430364 161.08363448430364 15.954139085888016 0 0 0 0 0 1.6989700043360187 0.3054621874040891 1.0189301784845295 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NES{M(Oxidation (M))|F}G 4.8017 - 287 NaN NaN 209488.2 NaN 16548 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20385 83.028 NaN 94185 35 0 6950.9 0.264 -1 0 44 426.24574974605105 850.4769465589021 2 426.24566650390625 MULTI HCD FTMS 0 0 0 20379 43646.78515625 0.025555994053914677 12 -0.347869873046875 6 NaN NaN 1 {[{M(Oxidation (M))|F}H]|[RQ]}P 3 -1 5.9421 0 0 0.69868 0 0 0 466.2419056255615 466.2419056255615 1.5051499783199063 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}P 0.69868 - 17 NaN NaN 94292.2 NaN 16549 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20386 83.031 NaN 213040 35 0 17893 0.261 -1 TFAMYPPSMI 10 62 595.2683269981943 1188.5221010631885 2 595.2670288085938 MULTI HCD FTMS 0 0 0 20379 47517.54296875 0.48667187405357065 -10 0.301971435546875 7 2 Oxidation (M) _TFAM(Oxidation (M))YPPSM(Oxidation (M))I_ ENSG00000112576|ENST00000372991|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3 9.38312468134398 0.42334543440173333 1 {I|L}{I|L} 2 -1 25.217 0 0 2.1217 0 0 944.3442375361333 0 944.3442375361333 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.1217 - 42 NaN NaN 115676.3 NaN 16550 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20387 83.035 NaN 151820 35 0 29324 0.262 -1 VMTEVLGIL 9 41 495.78002439719296 989.5454958611859 2 495.7792053222656 MULTI HCD FTMS 0 0 0 20379 54834.75390625 0.10793552362545704 -6 0.17052459716796875 8 Oxidation (M) _VM(Oxidation (M))TEVLGIL_ ENST00000459854.5_1_22:19442175-19463025:-|nuORF 28.486842064014134 0.11819662193267319 1 GQ[DG]SVA{I|L} 8 -1 52.115 0 0 5.2666 0 0 244.17836196113439 0 244.17836196113439 0 43.13608784304506 0 0 0 1.274227503252014 0 0.4247425010840047 0 GQ[DG]SVA{I|L} 5.2666 - 304 NaN NaN 108873.4 NaN 16551 3834 20379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20389 83.04 NaN 875900 35 0 61255 0.327 + 22934 QYTDLLRLF 9 89 584.821709424037 1167.6288659148738 2 584.8220825195312 MULTI HCD FTMS 0 0 0 20388 377028.4375 1 0 0 1 Unmodified _QYTDLLRLF_ ENSG00000213639|ENST00000395366|PPP1CB 185.05004568166646 7.3094861853412E-13 1 [YQ]TD{I|L}{I|L}R{I|L}{M(Oxidation (M))|F} 9 0 + 98.973 0 0 8.4764 8.4764 96.346 0 0 0 4.6792500248472635 4.6792500248472635 4.6792500248472635 33.55163835018571 0 3.3182503180159344 1.3010299956639813 1.9604093769761874 2.7134679910804405 + + [YQ]TD{I|L}{I|L}R{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}Q{I|L}R{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}R{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L}{M(Oxidation (M))|F};[YQ]TD{I|L}[R{M(Oxidation (M))|F}]{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}TD{I|L}{I|L}[HA]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[QG]|[NA]}YTVV{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}Q[R{M(Oxidation (M))|F}]{I|L}{I|L} 8.4764;5.6029;3.9578;3.7011;3.3858;2.8344;1.2123;0.51227 +;-;-;-;-;-;-;- + 2150 NaN NaN 216534.3 NaN 16552 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20390 83.044 NaN 1138600 35 0 159090 0.261 + 20222 NYLLYVSNF 9 102 566.7873821749989 1131.5602114167978 2 566.78759765625 MULTI HCD FTMS 0 0 0 20388 289846.5 0.637065135050689 -2 0.06583404541015625 2 Unmodified _NYLLYVSNF_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R 86.33184430468982 0.004622086694044132 1 {M(Oxidation (M))|F}GSV{I|L}YVSN{M(Oxidation (M))|F} 10 4 + 68.886 0 0 6.0877 6.0877 90.564 0 0 0 51.69413501574343 1.9201796388170038 1.9201796388170038 16.154239528859435 0 2.110924374808178 0 0.28872548999643577 0.6989700043360187 {M(Oxidation (M))|F}GSV{I|L}YVSN{M(Oxidation (M))|F};{M(Oxidation (M))|F}GSV{I|L}YVSGG{M(Oxidation (M))|F};{M(Oxidation (M))|F}GSV{I|L}Y[NS]V{M(Oxidation (M))|F};{M(Oxidation (M))|F}[{I|L}V][SG]YVSN{M(Oxidation (M))|F};[Y{I|L}]N{I|L}Y{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[VS];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]EVH[NP];[YN]{I|L}{I|L}Y{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[VS];[Y{I|L}]N{I|L}Y[NG][Y{I|L}];[YQ]V{I|L}Y{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[VS];[YK]{[CA]|SS}Y{I|L}W[VS] 6.0877;4.6601;4.0086;3.7268;3.0981;3.0428;2.6851;2.6765;2.636;2.4015 -;-;-;-;-;-;-;-;-;- 2957 + NaN NaN 271084.3 NaN 16553 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20391 83.048 NaN 259530 35 0 36355 0.262 + 25141 SAIFPDVAL 9 42 466.7578441817559 931.5011354303118 2 466.758056640625 MULTI HCD FTMS 0 0 0 20388 205396.15625 1 0 0 3 Unmodified _SAIFPDVAL_ ENSG00000143499|ENST00000366957|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;nc|ENSG00000143499|Q9NRG4-2|SMYD2 36.12702656103203 0.08312389501731911 1 P{[ES]|[DT]|[{I|L}C]}A{I|L} 5 5 31.026 0 0 3.3307 0 0 416.2262135236344 0 416.2262135236344 0 15.568109453757655 0 0 0 1 0 0.3807196863200844 0 P{[ES]|[DT]|[{I|L}C]}A{I|L} 3.3307 - 27 NaN NaN 119742.8 NaN 16554 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20392 83.051 NaN 436280 35 0 44659 0.261 + 19773 NYAWVYYHL 9 76 614.7942781955768 1227.5740034579535 2 614.7951049804688 MULTI HCD FTMS 0 0 0 20388 140606.65625 0.8311440759173679 -3 0.0953369140625 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.02929079705179888 1 [YN]AWVYWN{I|L} 9 2 + 66.931 0 0 5.4523 5.4523 87.001 0 0 0 20.23412009552994 35.30282735936778 20.23412009552994 9.208187539523749 0 1.7134679910804405 1.3979400086720375 0 0.5796896906561032 [YN]AWVYWN{I|L};[YN]AWVYWGG{I|L};[YN]AWV[{M(Oxidation (M))|F}V]CN{I|L};[YN]AWVYQ{[RE]|[WV]};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}VY[VS]N{I|L};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}VYK[DG]{I|L};[YN]AWV[{M(Oxidation (M))|F}V]CGG{I|L};[YN]AWVY[AG]{[RE]|[WV]} 5.4523;4.7022;4.5502;4.2719;4.1657;3.9557;3.9104;3.8122;3.8036;3.5218 -;-;-;-;-;-;-;-;-;- 1553 NaN NaN 145731.5 NaN 16555 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20393 83.054 NaN 237890 35 0 18984 0.261 + 28898 TWFTAGAKLLF 11 67 627.8474905822936 1253.6804282313872 2 627.8482055664062 MULTI HCD FTMS 0 0 0 20388 38512.44140625 0.027795350063615453 32 -0.9406890869140625 5 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 94.90867108109511 0.013953977517728908 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 80.227 0 0 6.3993 6.3993 84.287 0 0 0 3.8021124171160636 73.1926720723289 3.8021124171160636 1.2057393120584976 0 2.9802046884880937 0 1.4049471895720984 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGA{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQA{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TK[QA]{I|L}{I|L}{M(Oxidation (M))|F} 6.3993;6.3031;5.6164;4.0094;3.9539;3.9132;3.2264;2.6068 -;+;-;-;+;-;-;- + 407 NaN NaN 119215 NaN 16556 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20394 83.058 NaN 107470 35 0 9550.7 0.264 + 23231 RGAPPPRG 8 51 404.23290977101203 806.4512666088241 2 404.2331237792969 MULTI HCD FTMS 0 0 0 20388 64783.27734375 0.5658951366069874 3 -0.085296630859375 6 Unmodified _RGAPPPRG_ ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR 2.302733041254933 0.5385759549224092 1 {[{M(Oxidation (M))|F}H]|[RQ]}P 3 6 7.4473 0 0 0.92346 0 0 0 422.215127042671 422.215127042671 3.2660625688767198 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}P 0.92346 - 16 NaN NaN 106522 NaN 16557 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20395 83.061 NaN 105470 35 0 12926 0.261 + 18135 MPDFDLNL 8 38 482.725886134267 963.437219335334 2 482.7258605957031 MULTI HCD FTMS 0 0 0 20388 46464.5390625 0.6312045371884591 4 -0.12151336669921875 7 Unmodified _MPDFDLNL_ ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 1 {I|L}N{I|L} 3 5 35.445 0 0 3.679 0 0 605.2155805169203 0 605.2155805169203 0 24.987737688117235 0 0 0 0.5 0 0 0.4247425010840047 + {I|L}N{I|L} 3.679 + + 24 NaN NaN 101124.3 NaN 16558 3835 20388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20397 83.066 NaN 744150 35 0 37216 0.327 -1 0 103 531.8170281056758 1061.6195032781516 2 531.8172607421875 MULTI HCD FTMS 0 0 0 20396 711046.875 0.6932838170217014 13 -0.370697021484375 1 NaN NaN 1 D 1 -1 9.0938 0 0 0.8566 0 0 61.05399675412372 882.4908575721316 943.5448543262554 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.8566 - 224 + NaN NaN 199672.9 NaN 16559 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20398 83.07 NaN 594580 35 0 114090 0.261 + 7531 FYADHPFIFL 10 68 635.3188922894755 1268.6232316457508 2 635.3189697265625 MULTI HCD FTMS 0 0 0 20396 427089.84375 0.9238164520054138 1 -0.02954864501953125 2 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 85.27202061508552 0.0013652993904470648 1 DC{M(Oxidation (M))|F}{I|L} 4 7 45.235 0 0 3.5657 0 0 772.4301014630875 0 772.4301014630875 0 27.008272069161734 0 0 0 0.9247425010840047 0 0.7059771852360797 0 DC{M(Oxidation (M))|F}{I|L} 3.5657 - 423 NaN NaN 173662.9 NaN 16560 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20399 83.074 NaN 500320 35 0 54843 0.261 + 17328 LYPSIIQEF 9 76 555.297215354268 1108.579877775336 2 555.2974853515625 MULTI HCD FTMS 0 0 0 20396 157166.40625 0.3309908801419227 5 -0.15106201171875 3 Unmodified _LYPSIIQEF_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 76.82478488871298 0.006879825292024087 1 [Y{I|L}][PS]{I|L}{I|L}QE{M(Oxidation (M))|F} 9 0 + 63.444 0 0 5.723 5.723 84.054 0 0 0 3.295671638727029 6.9897000433601875 3.295671638727029 3.0153844027245924 0 2.5669015600442577 1.2218487496163564 0 0.3494850021680094 + + [Y{I|L}][PS]{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}E[Q{I|L}]{M(Oxidation (M))|F};[Y{I|L}]V[TP]E[Q{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}E[Q{I|L}]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}D[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F} 5.723;5.451;5.4257;4.5771;4.3051;4.2798;3.5806;3.3085;3.2833;2.5176 +;-;-;-;-;-;-;-;-;- + 526 NaN NaN 160080 NaN 16561 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20400 83.077 NaN 348400 35 0 37652 0.261 + 29856 VFAGVFNTF 9 79 501.2582689789679 1000.5019850247359 2 501.2705993652344 MULTI HCD FTMS 0 0 0 20396 46954.09765625 0.27539464013401954 3 -0.09527587890625 4 Unmodified _VFAGVFNTF_ ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}[QT]{I|L}{I|L} 5 8 33.328 0 0 3.3311 0 0 380.169237205275 0 380.169237205275 0 15.853481135844874 0 0 0 1 0 0 0.3494850021680094 {M(Oxidation (M))|F}[QT]{I|L}{I|L} 3.3311 - 357 NaN NaN 139831.6 NaN 16562 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20401 83.08 NaN 369150 35 0 75104 0.261 + 31947 VYPAVMVLL 9 51 510.793903257783 1019.573253582366 2 510.793701171875 MULTI HCD FTMS 0 0 0 20396 68406.109375 0.6314154949652154 -1 0.02623748779296875 5 Oxidation (M) _VYPAVM(Oxidation (M))VLL_ ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 56.04830969593885 0.023109620888794903 1 [YV]{[ET]|[MV]}[PS]V{I|L}{I|L} 9 4 + 40.11 0 0 3.934 3.934 89.138 0 0 0 0.18709944581907223 24.155462488490684 0.18709944581907223 40.10984977102048 0 1.1747425010840047 1.5228787452803376 0 0 [YV]{[ET]|[MV]}[PS]V{I|L}{I|L} 3.934 - 61 NaN NaN 133002.2 NaN 16563 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20402 83.084 NaN 222600 35 0 26130 0.261 -1 FPTVVIYVM 9 60 542.7909082805446 1083.5672636278891 2 542.80810546875 MULTI HCD FTMS 0 0 0 20396 19316.798828125 0.03991057903754653 30 -0.8815231323242188 6 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.21397866736869717 1 YV{M(Oxidation (M))|F} 3 -1 37.435 0 0 3.4548 0 0 656.3902444401923 0 656.3902444401923 0 30.981362441963327 0 0 0 1.4247425010840047 0 0 0 YV{M(Oxidation (M))|F} 3.4548 + + 95 + NaN NaN 111660.5 NaN 16564 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20403 83.087 NaN 139830 35 0 12952 0.261 + 4044 ESEEYLLC 8 41 493.2135964595061 984.4126399858122 2 493.2132873535156 MULTI HCD FTMS 0 0 0 20396 47999.81640625 1 0 0 7 Unmodified _ESEEYLLC_ ENSG00000198752|ENST00000361246|CDC42BPB 5.760428011301431 0.5334459684533844 1 C{I|L}[MT]G{I|L}C{I|L} 8 7 24.213 0 0 2.4597 0 0 132.00451117897472 0 132.00451117897472 0 3.2441718555279664 0 0 0 0.23020468848809378 0 0.3494850021680094 0 C{I|L}[MT]G{I|L}C{I|L} 2.4597 - 34 + NaN NaN 102903.1 NaN 16565 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20404 83.09 NaN 127360 35 0 21695 0.261 + 25418 SERPTKVQL 9 43 529.3017103936078 1056.5888678540155 2 529.3019409179688 MULTI HCD FTMS 0 0 0 20396 29391.611328125 0.7297384832675436 1 -0.02954864501953125 8 Unmodified _SERPTKVQL_ CON__P28800 12.240655878213236 0.2545997876781172 1 Q{I|L} 2 7 22.959 0 0 2.1729 0 0 797.435640065408 0 797.435640065408 0 13.226825097560422 0 0 0 0.5 0 0 0 + Q{I|L} 2.1729 + + 30 NaN NaN 110769.8 NaN 16566 3836 20396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20406 83.095 NaN 1187700 35 0 95329 0.327 + 5341 FFSPMLGEF 9 112 545.7496248869764 1089.4846968407528 2 545.7496337890625 MULTI HCD FTMS 0 0 0 20405 559192.75 0.8683095326040521 2 -0.06572723388671875 1 Oxidation (M) _FFSPM(Oxidation (M))LGEF_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 107.99703571036002 0.003269392969029945 1 {I|L}{M(Oxidation (M))|F}PSE{M(Oxidation (M))|F} 6 5 56.407 0 0 5.1774 0 0 351.14242943224144 0 351.14242943224144 0 35.45068545088324 0 0 0 1.9247425010840047 0 0.6549471895720984 0 {I|L}{M(Oxidation (M))|F}PSE{M(Oxidation (M))|F} 5.1774 - 956 NaN NaN 261610.5 NaN 16567 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20407 83.1 NaN 640710 35 0 106570 0.261 + 24193 RYFILPYVI 9 73 592.3473730950082 1182.6801932568162 2 592.3474731445312 MULTI HCD FTMS 0 0 0 20405 199015.390625 0.24042083151842478 7 -0.2034149169921875 2 Unmodified _RYFILPYVI_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 21.74664581756881 0.17247014374749275 1 [YV]PC(Carbamidomethyl (C))W 5 7 26.643 0 0 2.2528 0 0 0 474.3704750622257 474.3704750622257 1.4266750356873104 0 0 0 0 0.4247425010840047 1.0969100130080565 0 0 [YV]PC(Carbamidomethyl (C))W 2.2528 - 188 NaN NaN 181020.8 NaN 16568 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20408 83.103 NaN 245080 35 0 12927 0.261 -1 0 87 553.8298338500571 1105.645114766914 2 553.8300170898438 MULTI HCD FTMS 0 0 0 20405 172318.40625 0.44154239870856876 13 -0.3740234375 3 NaN NaN 1 H 1 -1 6.9897 0 0 0.63218 0 0 237.1540932800321 728.4113863580686 965.5654796381007 0 0 0 0 0 0 0 0 0 H 0.63218 - 181 + NaN NaN 120237.1 NaN 16569 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20409 83.107 NaN 526180 35 0 43740 0.261 + 4258 EVIDVFEIM 9 88 555.7728286563264 1109.5311043794527 2 555.7730712890625 MULTI HCD FTMS 0 0 0 20405 224218 1 0 0 4 Oxidation (M) _EVIDVFEIM(Oxidation (M))_ ENSG00000100890|ENST00000534898|PRORP;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-2|PRORP;nc|ENSG00000100890|O15091-4|PRORP 120.45040980043947 0.0012363446172167195 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}D[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F} 9 0 + 70.988 0 0 6.398 6.398 84.736 0 0 0 18.732233793583383 43.09582920311654 18.732233793583383 2.12064092663023 0 2.110924374808178 1.0969100130080565 1.6056270500406935 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}D[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}VV{M(Oxidation (M))|F}EE{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}VE[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}D{I|L}[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};[Y{I|L}]S[{I|L}P]EE{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[{I|L}A]EE{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}VVEE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}VV{M(Oxidation (M))|F}{I|L}EE{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Y[{I|L}P]EE{I|L}{M(Oxidation (M))|F};[YV]T[{I|L}P]EE{I|L}{M(Oxidation (M))|F} 6.398;6.2069;6.0307;5.7594;4.6203;4.2364;4.2146;3.6295;3.2637;3.2637 +;-;-;-;-;-;-;-;-;- + 951 NaN NaN 156175.7 NaN 16570 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20410 83.11 NaN 273610 35 0 38378 0.261 + 17619 LYYDAIWHF 9 77 614.2951260546212 1226.5756991760422 2 614.2952880859375 MULTI HCD FTMS 0 0 0 20405 135545.703125 0.0059203675979082075 102 -2.2938003540039062 5 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 57.47134341890925 0.0211188941628804 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 62.33 0 0 5.0816 5.0816 83.015 0 0 0 4.745462655597095 4.745462655597095 4.745462655597095 3.182503180159344 0 2.1237125054200234 2 0 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]A{[YD]|[{M(Oxidation (M))|F}M]}{I|L}WH{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV{[TV]|[{I|L}S]}D{I|L}{M(Oxidation (M))|F};[Y{I|L}]A{[QD]|[EN]|[WG]|[KD]|[RS]}[QP]DM{M(Oxidation (M))|F};[Y{I|L}]A{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[EP] 5.0816;4.8221;4.3323;3.5629;2.8657;2.7871;2.5048;2.3062;2.2844;2.2333 +;-;-;-;-;-;-;-;-;- + 1104 NaN NaN 131408.5 NaN 16571 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20411 83.113 NaN 142430 35 0 28132 0.264 -1 0 45 434.7589549485442 867.5033569638885 2 434.7590026855469 MULTI HCD FTMS 0 0 0 20405 40293.45703125 0.02773821033589939 17 -0.5007400512695312 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 101679.8 NaN 16572 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20412 83.117 NaN 178110 35 0 18421 0.261 + 19120 NFLDFAYHF 9 66 587.2715213333154 1172.5284897334307 2 587.27294921875 MULTI HCD FTMS 0 0 0 20405 52461.578125 0.5177265397955302 -1 0.02954864501953125 7 Unmodified _NFLDFAYHF_ ENSG00000147676|ENST00000614891|MAL2 56.17704186161178 0.022929533404884107 1 {M(Oxidation (M))|F}VKD{M(Oxidation (M))|F}AY{[{M(Oxidation (M))|F}H]|[RQ]} 9 3 + 47.296 0 0 4.0337 4.0337 83.457 0 0 0 32.859411588651625 4.137342758552691 4.137342758552691 7.9722877531575165 0 1.3754223615525998 0 0 0 {M(Oxidation (M))|F}VKD{M(Oxidation (M))|F}AY{[{M(Oxidation (M))|F}H]|[RQ]};{M(Oxidation (M))|F}VKD{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KC]A{M(Oxidation (M))|F}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{M(Oxidation (M))|F}VKD{[HG]|PP}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[KC]{M(Oxidation (M))|F}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}D{M(Oxidation (M))|F}A{[CT]|[{M(Oxidation (M))|F}G]}{[QD]|[EN]|[WG]|[KD]|[RS]};[YK][MN]{M(Oxidation (M))|F}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KC]A{M(Oxidation (M))|F}DK{NN|[MP]|[D{I|L}]|[EV]};{M(Oxidation (M))|F}V[HV][NS]D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.0337;3.3538;3.2091;2.808;2.675;2.4467;2.3747;2.3551;2.2692;1.9148 -;-;-;-;-;-;-;-;-;- 651 + NaN NaN 118379.9 NaN 16573 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20413 83.12 NaN 218660 35 0 40094 0.261 -1 0 53 562.3433286913858 1122.6721044495714 2 562.343505859375 MULTI HCD FTMS 0 0 0 20405 42142.6015625 0.28234484297830215 14 -0.40866851806640625 8 NaN NaN 1 YEYCP{I|L}[{M(Oxidation (M))|F}T] 8 -1 35.126 0 0 3.1288 0 0 88.22711453887275 0 88.22711453887275 0 30.521694116643374 0 0 0 0 0 0 0 YEYCP{I|L}[{M(Oxidation (M))|F}T] 3.1288 - 164 + NaN NaN 129988.1 NaN 16574 3837 20405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20415 83.125 NaN 1323800 35 0 159920 0.327 + 15155 LMSLIINTF 9 91 534.2939096770834 1066.5732664209668 2 534.2941284179688 MULTI HCD FTMS 0 0 0 20414 852620.5 0.24846507078468824 15 -0.44162750244140625 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 160.51597146486608 8.986712039288196E-09 1 SN{I|L}{I|L}{[HG]|PP}T{M(Oxidation (M))|F} 8 5 81.522 0 0 7.6433 0 0 179.094530174025 0 179.094530174025 0 18.69402840463316 0 0 0 1.805462187404089 0 1.8539171939081172 0.9802046884880937 SN{I|L}{I|L}{[HG]|PP}T{M(Oxidation (M))|F} 7.6433 - 1632 NaN NaN 292568.5 NaN 16575 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20416 83.129 NaN 1461200 35 0 413270 0.261 + 3863 EPLAESITDVL 11 86 593.8137723400666 1185.6129917469332 2 593.8139038085938 MULTI HCD FTMS 0 0 0 20414 1015016.1875 0.5442131262782857 -3 0.085296630859375 2 Unmodified _EPLAESITDVL_ ENSG00000143384|ENST00000369026|MCL1 125.52916310638031 0.012977282242411743 1 [DV][VP]ES{I|L}TDV{I|L} 11 4 + 91.775 0 0 7.7408 7.7408 94.026 0 0 0 10.055910365907266 54.75872866780084 10.055910365907266 19.5289375146765 0 2.2302046884880937 1.5228787452803376 2.004432191740108 0 [DV][VP]ES{I|L}TDV{I|L};[DV]T{I|L}S{I|L}[DP]DV{I|L};[DV]T{I|L}SE[VP]DV{I|L};[DV]T{I|L}S{I|L}DDPV{I|L};[DV]TTV{I|L}[DP]DV{I|L};[DV]T{I|L}SE[DV]PV{I|L};{[ES]|[DT]|[{I|L}C]}V{I|L}S{I|L}[DP]DV{I|L};[VS]E{I|L}S{I|L}[DP]DV{I|L};[DV]TTVE[VP]DV{I|L};[DV][VP]ES{I|L}T[{I|L}V]D 7.7408;6.0936;5.7967;5.3964;5.1625;5.0995;5.063;4.9145;4.8656;4.8043 -;-;-;-;-;-;-;-;-;- 1400 NaN NaN 309909.6 NaN 16576 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20417 83.133 NaN 343900 35 0 39474 0.261 + 14182 LALETEWEL 9 66 552.2838845770272 1102.5532162208542 2 552.2845458984375 MULTI HCD FTMS 0 0 0 20414 288178.53125 1 0 0 3 Unmodified _LALETEWEL_ ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF;nc|ENSG00000127463|Q8N766-2|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-4|EMC1 81.89019881105858 0.005240739447516426 1 {I|L}{M(Oxidation (M))|F}WET 5 6 60.38 0 0 5.4764 0 0 0 423.224381662006 423.224381662006 36.50104260342735 0 0 0 0 1.6549471895720984 0 1.0387254899964358 0 {I|L}{M(Oxidation (M))|F}WET 5.4764 - 666 + NaN NaN 136154.8 NaN 16577 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20418 83.136 NaN 805680 35 0 157390 0.261 + 10455 IPDILDGPEL 10 62 541.2924384510449 1080.5703239688896 2 541.2925415039062 MULTI HCD FTMS 0 0 0 20414 421860.0625 0.40893973923261406 -5 0.15113067626953125 4 Unmodified _IPDILDGPEL_ ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 75.76082778847304 0.010759267023115521 1 [EP]V{I|L}{I|L}DGPE{I|L} 10 2 + 70.583 0 0 6.532 6.532 64.238 0 0 0 0 16.53212513775344 0 0 0 1.774227503252014 0 0.4247425010840047 0 [EP]V{I|L}{I|L}DGPE{I|L};{[QN]|[E{I|L}]|[KN]}PV{I|L}DGPE{I|L};[EP]{I|L}V{I|L}DGPE{I|L};[EP]GD{I|L}{I|L}VPE{I|L};[EP]VAD{I|L}VPE{I|L};{[QN]|[E{I|L}]|[KN]}PGD{I|L}VPE{I|L};[EP]G{I|L}D{I|L}VPE{I|L};[EP]{I|L}GD{I|L}VPE{I|L};[EP]V{I|L}{[DA]|[EG]}VPE{I|L};{[QN]|[E{I|L}]|[KN]}PV{[DA]|[EG]}VPE{I|L} 6.532;6.532;6.0905;5.557;5.0706;5.0706;4.792;4.6291;4.1711;4.1711 -;-;-;-;-;-;-;-;-;- 668 NaN NaN 199860.4 NaN 16578 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20419 83.14 NaN 239710 35 0 20429 0.261 + 26949 SYLIGTNLF 9 53 514.2765495616377 1026.5385461900753 2 514.2765502929688 MULTI HCD FTMS 0 0 0 20414 159629.1875 1 0 0 5 Unmodified _SYLIGTNLF_ ENSG00000036565|ENST00000276373|SLC18A1;nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1 45.69961567697781 0.039180348357221985 1 {[QV]|[N{I|L}]|[RA]|[KV]}[WH]PT{I|L}{M(Oxidation (M))|F} 8 6 + 54.499 0 0 5.309 5.309 85.909 0 0 0 8.339993556128107 42.4202997895334 8.339993556128107 9.119543704721593 0 1.1549471895720984 1.5228787452803376 0.4247425010840047 0.3807196863200844 {[QV]|[N{I|L}]|[RA]|[KV]}[WH]PT{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WH]{I|L}[TP]{M(Oxidation (M))|F} 5.309;4.4206 -;- 207 NaN NaN 132750.4 NaN 16579 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20420 83.143 NaN 314730 35 0 28354 0.261 + 34868 YSDGVELLQM 10 81 577.7736665699496 1153.532780206699 2 577.7742919921875 MULTI HCD FTMS 0 0 0 20414 91954.96875 0.02095151865239458 35 -1.0226821899414062 6 Unmodified _YSDGVELLQM_ ENSG00000084444|ENST00000197268|FAM234B 17.11289562659939 0.35104376501799556 1 [YN]{I|L}{I|L}PHH{M(Oxidation (M))|F}N 9 9 + 32.306 0 0 2.8006 2.8006 80.307 0 0 0 3.322238599717025 5.038669271071004 3.322238599717025 3.0102999566398125 0 1.2302046884880937 1.154901959985743 0 0.3807196863200844 [YN]{I|L}{I|L}PHH{M(Oxidation (M))|F}N;[YN]{I|L}{I|L}PHHN{M(Oxidation (M))|F};[YN]{I|L}{I|L}PHHGG{M(Oxidation (M))|F};[QT]{[DA]|[EG]}V[MD]VY{I|L};[QT]W[RN]{M(Oxidation (M))|F}A[MT];[QT]W[RN]{[CA]|SS}Y{I|L} 2.8006;2.5397;1.7414;1.1855;0.3755;0.14268 -;-;-;-;-;- 684 NaN NaN 131793.3 NaN 16580 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20421 83.146 NaN 235540 35 0 29572 0.262 + 3146 EASGLFIQL 9 50 489.26868699432595 976.5228210554519 2 489.26910400390625 MULTI HCD FTMS 0 0 0 20414 152520.234375 0.8149061796756636 -2 0.05905914306640625 7 Unmodified _EASGLFIQL_ ENSG00000179409|ENST00000319004|GEMIN4 52.268347100219714 0.028397529699942435 1 {[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}Q{I|L} 8 3 + 44.461 0 0 4.553 4.553 80.598 0 0 0 1.249387366082999 13.658650111567638 1.249387366082999 0.044321917401077826 0 1.25 0 1.035666875892183 0 {[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}Q{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}Q{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}[AG]{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[AG]{I|L}{I|L} 4.553;4.5484;4.425;4.4205;3.6045;3.5999;3.4765;3.472 -;-;-;-;-;-;-;- 148 NaN NaN 117143.9 NaN 16581 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20422 83.15 NaN 421660 35 0 41785 0.261 + 31225 VVPSGGFFPTI 11 79 560.8057139952418 1119.5968750572836 2 560.8055419921875 MULTI HCD FTMS 0 0 0 20414 120434.078125 0.7005473840882882 -5 0.15113067626953125 8 Unmodified _VVPSGGFFPTI_ ENSG00000167778|ENST00000301463|SPRYD3 47.594388314883695 0.09129669622414652 1 VV[PS]N{M(Oxidation (M))|F}{I|L}P[{M(Oxidation (M))|F}T] 10 4 + 38.276 0 0 3.4187 3.4187 80.848 0 0 0 23.5705576812229 1.3555139031491876 1.3555139031491876 3.2814518514275477 0 1.6549471895720984 0 0.8494850021680094 0 VV[PS]N{M(Oxidation (M))|F}{I|L}P[{M(Oxidation (M))|F}T];VV[PS]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L};[TP]{I|L}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L};VV[PS]GG{M(Oxidation (M))|F}{I|L}P[{M(Oxidation (M))|F}T];[TP]{I|L}AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L};VVVV[C(Carbamidomethyl (C))S]{I|L}P[{M(Oxidation (M))|F}T];VV[KA][MD]{I|L}P[{M(Oxidation (M))|F}T];VV[HQ][RH]P[{M(Oxidation (M))|F}T];VVVVW{[CA]|SS}P[{M(Oxidation (M))|F}T] 3.4187;3.1256;2.7621;2.6001;1.9435;1.9318;1.8202;1.3279;1.2163 -;-;-;-;-;-;-;-;- 499 + NaN NaN 148818.3 NaN 16582 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20423 83.153 NaN 128930 35 0 12349 0.261 + 19121 NFLDFAYHF 9 58 587.2715213333154 1172.5284897334307 2 587.773193359375 MULTI HCD FTMS 0 0 0 20414 48350.5859375 0.9202218182323727 1 -0.03621673583984375 9 Unmodified _NFLDFAYHF_ ENSG00000147676|ENST00000614891|MAL2 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 5 7 32.135 0 0 2.7407 0 0 536.2383900373062 0 536.2383900373062 0 17.697953115119063 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 2.7407 - 172 NaN NaN 109978.8 NaN 16583 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20424 83.156 NaN 124670 35 0 24442 0.261 + -1 LYVCPHFIF 9 47 598.3019807680839 1194.5894086029678 2 598.30126953125 MULTI HCD FTMS 0 0 0 20414 45630.38671875 0.016663633805873417 124 -2.7720947265625 10 Carbamidomethyl (C) _LYVC(Carbamidomethyl (C))PHFIF_ REV__ENST00000559391.1_1_15:86279335-86283581:+|nuORF 14.581692164780916 0.23437375358055648 1 [Y{I|L}][HQ]P{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F} 8 -1 21.119 0 0 1.7679 0 0 0 202.1288732848615 202.1288732848615 0.15031251017077807 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}][HQ]P{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F} 1.7679 - 123 NaN NaN 105045.8 NaN 16584 3838 20414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20426 83.161 NaN 1197000 35 0 50731 0.327 + 23884 RSSKQLVDI 9 104 523.3036148573681 1044.592676781536 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20425 758460.5625 0.3841894953027416 10 -0.275421142578125 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 1 Q 1 8 10.713 0 0 1.0256 0 0 502.2992035256265 411.223422652967 913.5226261785936 0 0 0 0 0 0.7614393726401688 0 0 0 + Q 1.0256 + + 73 + NaN NaN 265071.1 NaN 16585 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20427 83.165 NaN 1058500 35 0 96655 0.261 -1 SYVGLVYMF 9 78 547.76470954321 1093.5148661532198 2 547.775634765625 MULTI HCD FTMS 0 0 0 20425 22527.62890625 0.236743613319445 2 -0.0557861328125 2 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 32.116972079565 0.101532291542178 1 [Y{I|L}]PE{I|L}DPT 8 -1 59.919 0 0 5.4795 0 0 0 162.0560701959594 162.0560701959594 16.427127331550864 0 0 0 0 0.8807196863200843 1.0969100130080565 1.8539171939081172 0 [Y{I|L}]PE{I|L}DPT 5.4795 - 1616 + NaN NaN 235201.5 NaN 16586 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20428 83.169 NaN 536270 35 0 188730 0.261 -1 0 57 510.8129573420404 1019.6113617508809 2 510.8128662109375 MULTI HCD FTMS 0 0 0 20425 88169.828125 0.37608112504117963 -1 0.03621673583984375 3 NaN NaN 1 {I|L}V{M(Oxidation (M))|F} 3 -1 11.682 0 0 1.1458 0 0 131.13401961118478 526.2670658992166 657.4010855104013 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.1458 - 31 + NaN NaN 175666.5 NaN 16587 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20429 83.172 NaN 268300 35 0 25690 0.261 + 4357 EWDQVTVYL 9 59 576.7823332856138 1151.5501136380276 2 576.782470703125 MULTI HCD FTMS 0 0 0 20425 49162.20703125 0.3227483058023545 -1 0.03621673583984375 4 Unmodified _EWDQVTVYL_ ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L 24.990960013464015 0.14443998892849796 1 VTVY{I|L} 5 4 51.454 0 0 4.4682 0 0 558.20707900215 0 558.20707900215 0 35.25576261223691 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + VTVY{I|L} 4.4682 + + 60 NaN NaN 128975.6 NaN 16588 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20430 83.176 NaN 238640 35 0 21681 0.261 + 28899 TWFTAGAKLLF 11 61 627.8474905822936 1253.6804282313872 2 627.8475952148438 MULTI HCD FTMS 0 0 0 20425 43128.7265625 0.031127033468412987 36 -1.04205322265625 5 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 79.42699986076722 0.00619153599879033 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 90.628 0 0 7.2289 7.2289 89.543 0 0 0 7.269987279362624 83.63798466605289 7.269987279362624 9.164539485499262 0 3.274227503252014 0 1.2302046884880937 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQK{M(Oxidation (M))|F}{I|L}{I|L};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{M(Oxidation (M))|F}{I|L}{I|L} 7.2289;6.4979;4.7302;3.9992 -;+;-;- + 301 NaN NaN 120638.4 NaN 16589 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20431 83.179 NaN 230140 35 0 23257 0.261 + 5492 FKDKFNYIE 9 65 602.3049533418007 1202.5953537504013 2 603.3065795898438 MULTI HCD FTMS 0 0 0 20425 40552.05859375 0.14721597981464615 -10 0.302093505859375 6 Unmodified _FKDKFNYIE_ REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 13.042465956692817 0.2476723265019929 1 E{I|L}NDD{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}E 9 -1 31.233 0 0 2.5971 0 0 129.0932688410167 0 129.0932688410167 0 10.263480968738467 0 0 0 0.6109243748081782 0 0.5 0.6989700043360187 E{I|L}NDD{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}E 2.5971 - 66 + NaN NaN 121083 NaN 16590 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20432 83.182 NaN 278150 35 0 23944 0.262 + 1969 DAIYEVVSL 9 61 504.76614643009765 NaN 0 504.76580810546875 PEAK HCD FTMS 0 0 0 20425 19551.640625 0.20784785723884203 2 -0.0557861328125 7 Unmodified _DAIYEVVSL_ ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L 34.40172386719151 0.09622929880997558 1 SVV 3 7 28.188 0 0 2.7977 0 0 131.0948406123453 588.230787242725 719.3256278550703 0 0 0 0 0 1.1989700043360187 0 0 0 SVV 2.7977 - 31 + NaN NaN 120334.4 NaN 16591 3839 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20434 83.187 NaN 1176000 35 0 305090 0.327 + 1241 AYLPVNESFGF 11 87 622.303526459436 1242.5924999856718 2 622.303466796875 MULTI HCD FTMS 0 0 0 20433 710866.5625 0.6266314704296294 2 -0.05585479736328125 1 Unmodified _AYLPVNESFGF_ ENSG00000167658|ENST00000309311|EEF2 159.1008501968603 2.6443469849064104E-08 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 11 0 + 126.75 0 0 10.201 10.201 97.316 0 0 0 24.35728569561438 104.07490503989874 24.35728569561438 22.980017023412927 0 3.3723637474483468 1.6989700043360187 0.3494850021680094 1.3851518780601924 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[Y{I|L}]APVNES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNE[YQ]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[DN]{I|L}S{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGE[YQ]{M(Oxidation (M))|F};[Y{I|L}]APVGGES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQ[RN]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[Y{I|L}]APVNE[YQ]{M(Oxidation (M))|F};[Y{I|L}]AP[DN]{I|L}S{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 10.201;8.3512;7.8195;7.6887;7.3781;6.4241;5.9701;5.4001;5.3076;4.997 +;-;-;-;-;-;-;-;-;- + 2166 NaN NaN 265853.9 NaN 16592 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20435 83.192 NaN 699520 35 0 94433 0.263 + 7444 FVTSIDVVL 9 73 496.7866820769819 991.5588112207638 2 496.7868347167969 MULTI HCD FTMS 0 0 0 20433 448444.15625 0.9497773781344505 -3 0.091888427734375 2 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 92.8221339359638 0.0044520161739443126 1 [{M(Oxidation (M))|F}V]T{[TV]|[{I|L}S]}DVV{I|L} 9 0 + 62.171 0 0 6.27 6.27 91.811 0 0 0 4.137342758552691 19.915215343448622 4.137342758552691 23.59189699011423 0 2.1747425010840047 0 1.1549471895720984 0 + + [{M(Oxidation (M))|F}V]T{[TV]|[{I|L}S]}DVV{I|L};VV[{M(Oxidation (M))|F}V]{[TV]|[{I|L}S]}TD{I|L};[{M(Oxidation (M))|F}V]T{[ET]|[MV]}{I|L}AV{I|L};[{M(Oxidation (M))|F}V]T{[TV]|[{I|L}S]}VVD{I|L};[{M(Oxidation (M))|F}V]T{[ET]|[MV]}{I|L}VA{I|L};[{M(Oxidation (M))|F}V]T{[TV]|[{I|L}S]}{[QN]|[E{I|L}]|[KN]}A{I|L};[{M(Oxidation (M))|F}V]T{[ET]|[MV]}{I|L}G{I|L}{I|L} 6.27;3.8907;2.6585;2.5852;1.8506;1.3746;1.3019 +;-;-;-;-;-;- + 1282 NaN NaN 183290.8 NaN 16593 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20436 83.195 NaN 874610 35 0 98858 0.261 + 20223 NYLLYVSNF 9 103 566.7873821749989 1131.5602114167978 2 566.7872314453125 MULTI HCD FTMS 0 0 0 20433 268844.1875 0.5909033181952524 3 -0.07540130615234375 3 Unmodified _NYLLYVSNF_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R 49.52724829834842 0.03223213920720493 1 VTVY{I|L}VSW 8 7 58.525 0 0 5.172 0 0 166.06055459910573 0 166.06055459910573 0 37.72283485483939 0 0 0 1.805462187404089 0 0.2614393726401688 0 VTVY{I|L}VSW 5.172 - 3077 + NaN NaN 216049.5 NaN 16594 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20437 83.199 NaN 435630 35 0 41813 0.261 + 10155 IFSDASRLIF 10 73 584.821709424037 1167.6288659148738 2 585.8133544921875 MULTI HCD FTMS 0 0 0 20433 18411.173828125 0.26049681120446894 4 -0.1115264892578125 4 Unmodified _IFSDASRLIF_ ENSG00000154330|ENST00000396396|PGM5;ENST00000496758.1_1_9:71114067-71144569:+|nuORF 14.838274106304384 0.3723198072575719 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 12.703 0 0 1.0879 0 0 129.11132634814663 628.2746676080686 757.3859939562153 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.0879 - 332 + NaN NaN 151171.4 NaN 16595 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20438 83.202 NaN 366200 35 0 45693 0.261 + 15636 LPEELSYLSSA 11 75 604.80459677382 1207.5946406144399 2 604.805419921875 MULTI HCD FTMS 0 0 0 20433 188106.078125 1 0 0 5 Unmodified _LPEELSYLSSA_ ENSG00000204542|ENST00000259870|C6orf15 12.240655878213236 0.35042917576941135 1 AES{I|L}T 5 8 22.722 0 0 1.8816 0 0 339.1807134677586 364.14838586978755 703.3290993375462 0 0 0 0 0 0 0 0.7059771852360797 0 AES{I|L}T 1.8816 - 264 + NaN NaN 143210.4 NaN 16596 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20439 83.205 NaN 254020 35 0 18566 0.261 + 11546 IYSPLLFKYF 10 57 645.8602284743139 1289.7059040154277 2 645.8604736328125 MULTI HCD FTMS 0 0 0 20433 129335.6875 0.20104800192753855 7 -0.20020294189453125 6 Unmodified _IYSPLLFKYF_ ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 76.82478488871298 0.009498572185128612 1 [Y{I|L}]S[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 10 0 + 84.831 0 0 6.5775 6.5775 88.003 0 0 0 1.625853418640375 1.625853418640375 1.625853418640375 8.883578386120234 0 2.9247425010840047 2 0.6989700043360187 0 + + [Y{I|L}]S[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}][TP]V{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}][TP]{M(Oxidation (M))|F}[{I|L}V]KY{M(Oxidation (M))|F} 6.5775;5.8887;4.2692;3.6011 +;-;-;- + 142 NaN NaN 117450.4 NaN 16597 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20440 83.209 NaN 104270 35 0 6732.3 0.263 + 34800 YRAPHAGGAL 10 52 506.77111775323226 NaN 0 506.7713317871094 PEAK HCD FTMS 0 0 0 20433 77679.90625 1 0 0 7 Unmodified _YRAPHAGGAL_ ENSG00000185155|ENST00000366810|MIXL1;nc|ENSG00000185155|Q9H2W2-2|MIXL1 9.38312468134398 0.33215363477037435 1 PV 2 9 9.464 0 0 0.93561 0 0 163.06600811271045 649.3026217096311 812.3686298223415 0 0 0 0 0 0 0 0 0 PV 0.93561 - 37 + NaN NaN 110390.8 NaN 16598 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20441 83.212 NaN 232250 35 0 21503 0.261 + 8045 GHCYKPFT 8 55 476.7206994356542 951.4268459381084 2 476.7208251953125 MULTI HCD FTMS 0 0 0 20433 76043.71875 1 0 0 8 Unmodified _GHCYKPFT_ ENSG00000144120|ENST00000272521|TMEM177 2.577480529830294 0.5381683276125971 1 D 1 8 4.6041 0 0 0.48391 0 0 284.0661414476771 549.3118990533811 833.3780405010582 0 0 0 0 0 0 0 0 0 D 0.48391 - 25 + NaN NaN 120216.7 NaN 16599 3840 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20443 83.217 NaN 695400 35 0 31357 0.327 -1 0 88 531.8170281056758 1061.6195032781516 2 531.8172607421875 MULTI HCD FTMS 0 0 0 20442 597272.5 0.5823517030464329 18 -0.51690673828125 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.1509 0 0 896.5403844810797 0 896.5403844810797 0 4.476212463643421 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1509 - 229 + NaN NaN 199433.9 NaN 16600 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20444 83.221 NaN 223080 35 0 38883 0.261 + 7532 FYADHPFIFL 10 59 635.3188922894755 1268.6232316457508 2 635.3189697265625 MULTI HCD FTMS 0 0 0 20442 64941.203125 0.1404710337598619 6 -0.1705780029296875 2 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 46.020951573049366 0.09315764076686055 1 {I|L}{M(Oxidation (M))|F}{I|L} 3 7 33.94 0 0 2.6754 0 0 877.3798084943375 0 877.3798084943375 0 19.235162698957282 0 0 0 0.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L} 2.6754 + + 36 NaN NaN 117435.1 NaN 16601 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20445 83.225 NaN 383970 35 0 133850 0.262 -1 IPVTIMDVF 9 57 525.7805101044983 1049.5464672757964 2 525.7807006835938 MULTI HCD FTMS 0 0 0 20442 181882.671875 0.339494183170035 -17 0.5088882446289062 3 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 25.399314129420986 0.14091189997036632 1 TYPDV{M(Oxidation (M))|F} 6 -1 55.482 0 0 5.2863 0 0 309.20396620918126 0 309.20396620918126 0 37.60213141451892 0 0 0 1.6861818737241734 0 0.3494850021680094 0 TYPDV{M(Oxidation (M))|F} 5.2863 - 128 NaN NaN 144239.4 NaN 16602 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20446 83.228 NaN 836550 35 0 88776 0.261 + 21882 QCTFINDFF 9 94 567.7477386146345 1133.480924296069 2 567.7281494140625 MULTI HCD FTMS 0 0 0 20442 33616.41015625 0.743047261868827 -1 0.02962493896484375 4 Unmodified _QCTFINDFF_ ENSG00000159339|ENST00000375448|PADI4 13.90604991867851 0.24021115267848145 1 C[KQ]S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 5 + 40.94 0 0 3.6118 3.6118 80.571 0 0 0 19.885153977734753 12.199142498391566 12.199142498391566 2.430380486862937 0 0 0 0.3807196863200844 0 C[KQ]S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[MD]{I|L}S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};SQ[KC]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[AG][KC]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};SQPDW[PG][NS]{M(Oxidation (M))|F};[MD]{I|L}[H{I|L}]PD{M(Oxidation (M))|F}{M(Oxidation (M))|F};C[WR]{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}{M(Oxidation (M))|F};CT[Q{I|L}]{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}{M(Oxidation (M))|F};SQ{[ET]|[MV]}{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}{M(Oxidation (M))|F};SQPDW[QT]SW 3.6118;3.3974;3.2242;2.4119;2.1456;1.9576;1.9522;1.9071;1.605;1.5958 -;-;-;-;-;-;-;-;-;- 1732 + NaN NaN 207882.5 NaN 16603 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20447 83.231 NaN 98022 35 0 9728.3 0.262 + 25142 SAIFPDVAL 9 41 466.7578441817559 931.5011354303118 2 466.75787353515625 MULTI HCD FTMS 0 0 0 20442 32356.853515625 0.15753388041128447 6 -0.1705780029296875 5 Unmodified _SAIFPDVAL_ ENSG00000143499|ENST00000366957|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;nc|ENSG00000143499|Q9NRG4-2|SMYD2 25.399314129420986 0.14091189997036632 1 A{I|L} 2 7 25.969 0 0 2.7879 0 0 729.3708858332878 0 729.3708858332878 0 6.704328361272967 0 0 0 0.5 0 0 0 + A{I|L} 2.7879 + + 10 NaN NaN 94125.6 NaN 16604 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20448 83.235 NaN 265690 35 0 23312 0.261 + 33778 YLFVFVTL 8 67 501.2899738864172 1000.5653948396345 2 501.2885437011719 MULTI HCD FTMS 0 0 0 20442 117814.8046875 1 0 0 6 Unmodified _YLFVFVTL_ REV__ENST00000264930.9_2_5:1051864-1052263:-|nuORF 13.50788311687929 0.4944073034352369 1 T{I|L} 2 -1 17.959 0 0 1.7949 0 0 768.4171166117957 0 768.4171166117957 0 3.0102999566398125 0 0 0 0 0 0 0 T{I|L} 1.7949 + + 188 NaN NaN 144954.6 NaN 16605 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20449 83.238 NaN 71441 35 0 11585 0.262 + 8705 HGPPHTPA 8 43 407.20398829418485 NaN 0 407.2040100097656 PEAK HCD FTMS 0 0 0 20442 37013.125 0.5249555203665585 -12 0.357879638671875 7 Unmodified _HGPPHTPA_ REV__ENSG00000183090|ENST00000329798|FREM3 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106299.1 NaN 16606 3841 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20451 83.243 NaN 852640 35 0 93106 0.327 + 12267 KLPALFFL 8 59 474.7995276574421 947.5845023816843 2 474.7994384765625 MULTI HCD FTMS 0 0 0 20450 288450.3125 0.2479179843159492 -7 0.20352935791015625 1 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 56.541270873467816 0.08727196028825994 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 49.346 0 0 5.2076 5.2076 91.394 0 0 0 6.923487412610356 31.28653141768609 6.923487412610356 49.34623773781176 0 2.1677353201839438 0 0 0.3054621874040891 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.2076 + + 45 NaN NaN 216414.4 NaN 16607 3842 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20452 83.247 NaN 392600 35 0 42076 0.261 + 23853 RSFEISQYI 9 71 571.7968271435565 1141.5791013539128 2 572.3131713867188 MULTI HCD FTMS 0 0 0 20450 12972.2822265625 0.7461467911448852 4 -0.11472320556640625 2 Unmodified _RSFEISQYI_ REV__ENSG00000107581|ENST00000369144|EIF3A;REV__ENST00000462527.2_1_10:120819077-120819266:-|nuORF;REV__nc|ENSG00000107581|Q14152-2|EIF3A 29.081581746732265 0.1154664336125038 1 {I|L}{M(Oxidation (M))|F}E[KC]{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 34.848 0 0 3.0526 0 0 130.05341367925536 0 130.05341367925536 0 12.19634858617303 0 0 0 0 0 1.0941876774005248 1.2302046884880937 {I|L}{M(Oxidation (M))|F}E[KC]{M(Oxidation (M))|F}{I|L}{I|L} 3.0526 - 298 + NaN NaN 147791.9 NaN 16608 3842 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20453 83.251 NaN 196150 35 0 27304 0.261 + 14562 LFIKVKANPF 10 58 588.8603632971182 1175.7061736610362 2 589.3621826171875 MULTI HCD FTMS 0 0 0 20450 25557.25 0.3553901555824881 -5 0.14774322509765625 3 Unmodified _LFIKVKANPF_ REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1 10.823927491677226 0.4098686510432541 1 YY{I|L} 3 -1 21.171 0 0 1.8007 0 0 0 733.4705834112893 733.4705834112893 0.7133375178436552 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 1.8007 - 56 NaN NaN 123994.7 NaN 16609 3842 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20454 83.254 NaN 126170 35 0 9368 0.262 + 32599 WKTILEEI 8 48 516.2922658211872 1030.5699787091744 2 516.7840576171875 MULTI HCD FTMS 0 0 0 20450 6258.8994140625 0.04170681964563377 11 -0.323394775390625 4 Unmodified _WKTILEEI_ REV__ENSG00000103671|ENST00000261884|TRIP4;REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF;REV__ENST00000561265.1_1_15:64686139-64701921:+|nuORF;REV__TRIP4|p.C86Sfs*8|1|0.09|ENSG00000103671|chr15:64394101-64394101|G/-|frameshift_variant 12.531546534597751 0.5015908124873912 1 VEQ{I|L} 4 -1 24.781 0 0 2.4046 0 0 543.3063832013687 0 543.3063832013687 0 15.049406363485858 0 0 0 0 0 0 0 VEQ{I|L} 2.4046 - 67 NaN NaN 102529 NaN 16610 3842 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20455 83.258 NaN 78784 35 0 13387 0.261 + 21313 PSHLADEH 8 43 453.2097261082513 NaN 0 453.2099304199219 PEAK HCD FTMS 0 0 0 20450 24180.248046875 0.6232347712237731 -19 0.5546493530273438 5 Unmodified _PSHLADEH_ ASXL2-DTNB|2|fusion;ASXL2-DTNB|3|fusion;ASXL2-DTNB|4|fusion;ASXL2-DTNB|6|fusion;ASXL2-DTNB|7|fusion;ENSG00000138101|ENST00000406818|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-7|DTNB 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95744.6 NaN 16611 3842 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20457 83.263 NaN 1945100 35 0 509260 0.327 + 3864 EPLAESITDVL 11 83 593.8137723400666 1185.6129917469332 2 593.8140258789062 MULTI HCD FTMS 0 0 0 20456 1344156 0.7206853919910665 2 -0.065673828125 1 Unmodified _EPLAESITDVL_ ENSG00000143384|ENST00000369026|MCL1 129.77232118876745 0.009143107868935524 1 [DV][VP]ES{I|L}TDV{I|L} 11 4 + 97.19 0 0 8.1974 8.1974 93.999 0 0 0 13.639856518253069 46.940845084331755 13.639856518253069 14.771212547196626 0 2.1747425010840047 1.5228787452803376 2.504432191740108 0 [DV][VP]ES{I|L}TDV{I|L};[DV]T{I|L}SE[VP]DV{I|L};[DV]T{I|L}S{I|L}[DP]DV{I|L};[DV][VP]SE{I|L}TDV{I|L};[DV]TTVE[VP]DV{I|L};[DV]TTV{I|L}[DP]DV{I|L};{[ES]|[DT]|[{I|L}C]}V{I|L}SE[VP]DV{I|L};{[ES]|[DT]|[{I|L}C]}V{I|L}S{I|L}[DP]DV{I|L};[VS]E{I|L}SE[VP]DV{I|L};[DV][PS]VE{I|L}TDV{I|L} 8.1974;6.9516;6.8053;6.574;6.2657;6.1194;5.921;5.7748;5.7725;5.7565 -;-;-;-;-;-;-;-;-;- 1455 NaN NaN 378741.7 NaN 16612 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20458 83.267 NaN 836830 35 0 94690 0.261 + 15156 LMSLIINTF 9 89 534.2939096770834 1066.5732664209668 2 534.294189453125 MULTI HCD FTMS 0 0 0 20456 568396.0625 0.1656382504324029 20 -0.5926971435546875 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 147.05914393524117 1.1935124485855994E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 86.938 0 0 8.1512 8.1512 93.61 0 0 0 8.134739409111916 66.34820009305471 8.134739409111916 13.455612550363796 0 2.274227503252014 0 1.7887254899964358 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}{[CT]|[{M(Oxidation (M))|F}G]}{[SA]|[TG]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[YV]{[NV]|[RG]} 8.1512;6.8896;5.6037;4.3351;3.9671;3.429;2.2205 +;-;-;-;-;-;- + 1083 NaN NaN 209508 NaN 16613 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20459 83.271 NaN 314480 35 0 67396 0.261 + 10453 IPDIIDEAAF 10 58 552.2838845770272 1102.5532162208542 2 552.283935546875 MULTI HCD FTMS 0 0 0 20456 123101.2734375 0.4271701743483017 5 -0.154327392578125 3 Unmodified _IPDIIDEAAF_ REV__ENSG00000167548|ENST00000301067|KMT2D;REV__KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D 45.69961567697781 0.09594615698576985 1 {I|L}PD{I|L} 4 -1 46.67 0 0 4.2329 0 0 0 661.2810762994749 661.2810762994749 26.18562527100117 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 {I|L}PD{I|L} 4.2329 + + 338 + NaN NaN 124283.4 NaN 16614 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20460 83.274 NaN 520940 35 0 183850 0.261 -1 0 47 510.8129573420404 1019.6113617508809 2 510.8132019042969 MULTI HCD FTMS 0 0 0 20456 175671.359375 0.749311684917877 3 -0.09517669677734375 4 NaN NaN 1 {I|L}V{M(Oxidation (M))|F} 3 -1 11.682 0 0 1.1458 0 0 131.133588689796 526.267895704736 657.401484394532 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.1458 - 37 + NaN NaN 157853.9 NaN 16615 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20461 83.277 NaN 483560 35 0 110360 0.261 + 33316 YFTSNSWVW 9 73 595.2683269981943 1188.5221010631885 2 595.2677612304688 MULTI HCD FTMS 0 0 0 20456 96621.2109375 0.9895887468593048 -1 0.0195465087890625 5 Unmodified _YFTSNSWVW_ ENSG00000197601|ENST00000354817|FAR1;ENST00000427163.1_1_13:90823702-90823903:+|nuORF 29.081581746732265 0.1154664336125038 1 C(Carbamidomethyl (C))WVW 4 6 40.42 0 0 3.4008 0 0 539.2591165971023 0 539.2591165971023 0 25.643265708843046 0 0 0 1.3252574989159953 0 0 0 C(Carbamidomethyl (C))WVW 3.4008 - 120 NaN NaN 163259.7 NaN 16616 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20462 83.281 NaN 243750 35 0 52441 0.261 + 6930 FPVKEVFELL 10 49 610.8499816716278 NaN 0 610.8499755859375 PEAK HCD FTMS 0 0 0 20456 59127.88671875 0.8850820666546058 1 -0.03612518310546875 6 Unmodified _FPVKEVFELL_ ENSG00000184014|ENST00000328194|DENND5A;ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A 10.799506525563784 0.33094140821724455 1 {I|L}E{M(Oxidation (M))|F} 3 8 15.674 0 0 1.2851 0 0 131.0944857613577 696.3726900690061 827.4671758303639 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}E{M(Oxidation (M))|F} 1.2851 - 9 + NaN NaN 114849.3 NaN 16617 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20463 83.284 NaN 208350 35 0 23896 0.261 + -1 VYLCHFCI 8 72 556.2569822795665 1110.499411625933 2 556.7410278320312 MULTI HCD FTMS 0 0 0 20456 27533.14453125 0.7473243219516291 -3 0.07540130615234375 7 2 Carbamidomethyl (C) _VYLC(Carbamidomethyl (C))HFC(Carbamidomethyl (C))I_ REV__ENST00000358935.2_1_10:94111129-94111204:+|nuORF 17.086550045450526 0.4680768486079041 1 VYA[HC]{I|L}MK{M(Oxidation (M))|F} 9 -1 + 50.511 0 0 4.5485 4.5485 82.766 0 0 0 19.837291805273452 1.2145604774749046 1.2145604774749046 4.674716983219909 0 1.4604093769761877 2 0 0 VYA[HC]{I|L}MK{M(Oxidation (M))|F};[YV]TD[HD]SK{M(Oxidation (M))|F};EDK[C(Carbamidomethyl (C))K]STP{M(Oxidation (M))|F};V{[HG]|PP}S[HD]DTP{M(Oxidation (M))|F};[YV]A[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}AM{I|L};[YV]A[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}CV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EP][YQ]AP{M(Oxidation (M))|F};EH[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}MK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EP][SG]{M(Oxidation (M))|F}AP{M(Oxidation (M))|F};WWNTVMK{M(Oxidation (M))|F} 4.5485;4.1276;3.2401;2.966;2.8823;2.6318;1.4341;1.3912;1.163;0.51696 -;-;-;-;-;-;-;-;-;- 360 + NaN NaN 126337.3 NaN 16618 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20464 83.287 NaN 374850 35 0 106710 0.261 + 29737 VDPVEVDVSP 10 68 528.2661490349464 1054.5177451366926 2 528.2660522460938 MULTI HCD FTMS 0 0 0 20456 46204.2734375 0.7958453705766432 2 -0.065673828125 8 Unmodified _VDPVEVDVSP_ REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;REV__ENSG00000124942|ENST00000378024|AHNAK 30.636539890814138 0.2266618088935899 1 VDT{I|L}EVP 7 -1 66.279 0 0 6.2852 0 0 0 298.11374841861567 298.11374841861567 51.586163651460524 0 0 0 0 0.3494850021680094 1.6989700043360187 0.8494850021680094 0 VDT{I|L}EVP 6.2852 - 335 + NaN NaN 153774.5 NaN 16619 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20465 83.291 NaN 52571 35 0 6560.1 0.261 + 33468 YHMSSIRA 8 33 482.7360571271999 NaN 0 482.72540283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YHMSSIRA_ ENSG00000170381|ENST00000643230|SEMA3E;nc|ENSG00000170381|O15041-2|SEMA3E 2.302733041254933 0.38822285293237185 1 N{I|L} 2 7 10.969 0 0 1.1385 0 0 131.11738927665107 602.1927584283811 733.3101477050323 0 0 0 0 0 0 0 0 0 N{I|L} 1.1385 - 5 + NaN NaN 98644.4 NaN 16620 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20466 83.294 NaN 201590 35 0 23836 0.261 -1 VACYHGFV 8 64 476.7206994356542 951.4268459381084 2 477.3287658691406 MULTI HCD FTMS 0 0 0 20456 12211.5888671875 0.31031593062714424 -1 0.0195465087890625 10 Carbamidomethyl (C) _VAC(Carbamidomethyl (C))YHGFV_ ENSG00000164236|ENST00000296657|ANKRD33B 2.8892196856762586 0.5377058178582064 1 H 1 -1 6.9897 0 0 0.73465 0 0 203.0429877905388 608.302390951797 811.3453787423357 0 0 0 0 0 0 0 0 0 H 0.73465 + + 9 + NaN NaN 117059 NaN 16621 3843 20456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20468 83.299 NaN 1129800 35 0 235100 0.327 + 10456 IPDILDGPEL 10 59 541.2924384510449 1080.5703239688896 2 541.2926025390625 MULTI HCD FTMS 0 0 0 20467 728096.875 0.7057974258906796 1 -0.02954864501953125 1 Unmodified _IPDILDGPEL_ ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 85.64151623876279 0.0013369395341731622 1 [EP]V{I|L}{I|L}DGPE{I|L} 10 2 + 77.216 0 0 7.1459 7.1459 85.598 0 0 0 0.9691001300805624 16.53212513775344 0.9691001300805624 0.9691001300805624 0 1.6989700043360187 0 0.6861818737241735 0 [EP]V{I|L}{I|L}DGPE{I|L};{[QN]|[E{I|L}]|[KN]}PV{I|L}DGPE{I|L};[EP]{I|L}V{I|L}DGPE{I|L};[EP]GD{I|L}{I|L}VPE{I|L};[EP]VAD{I|L}VPE{I|L};{[QN]|[E{I|L}]|[KN]}PGD{I|L}VPE{I|L};[EP]G{I|L}D{I|L}VPE{I|L};[EP]{I|L}GD{I|L}VPE{I|L};[EP]V{I|L}{[DA]|[EG]}VPE{I|L};{[QN]|[E{I|L}]|[KN]}PV{[DA]|[EG]}VPE{I|L} 7.1459;7.0562;6.7776;6.3561;5.7541;5.6644;5.5911;5.3858;5.1373;5.0476 -;-;-;-;-;-;-;-;-;- 564 NaN NaN 263504.8 NaN 16622 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20469 83.303 NaN 968290 35 0 59819 0.261 + 31383 VYAFNLDTF 9 107 545.2661225559592 1088.5176921787183 2 545.2662963867188 MULTI HCD FTMS 0 0 0 20467 296646.84375 0.721544803971579 -2 0.05567169189453125 2 Unmodified _VYAFNLDTF_ ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 144.35026110057638 1.4798765981150827E-05 1 [YV]A{M(Oxidation (M))|F}N{I|L}DT{M(Oxidation (M))|F} 9 0 + 96.442 0 0 8.8599 8.8599 95.359 0 0 0 19.25968732272281 57.65871564380276 19.25968732272281 16.63303128443836 0 2.5669015600442577 1.6989700043360187 0.3054621874040891 0.9916440611282626 + + [YV]A{M(Oxidation (M))|F}N{I|L}DT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QVDT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}GG{I|L}DT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}[AG]VDT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{M(Oxidation (M))|F}V]NVDT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}N[DV]YV;[YV]A{M(Oxidation (M))|F}QEAYV;[YV]A{M(Oxidation (M))|F}QE[VS]{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}GG[DV]YV;[{M(Oxidation (M))|F}T][{M(Oxidation (M))|F}V]GGVDT{M(Oxidation (M))|F} 8.8599;7.3319;7.103;5.8556;5.4342;5.3751;4.74;4.5196;4.0189;3.9578 +;-;-;-;-;-;-;-;-;- + 3156 NaN NaN 239506.4 NaN 16623 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20470 83.307 NaN 542960 35 0 46991 0.261 + 31226 VVPSGGFFPTI 11 77 560.8057139952418 1119.5968750572836 2 560.8054809570312 MULTI HCD FTMS 0 0 0 20467 101124.4453125 0.5882260796443576 1 -0.02954864501953125 3 Unmodified _VVPSGGFFPTI_ ENSG00000167778|ENST00000301463|SPRYD3 47.594388314883695 0.09129669622414652 1 VV[PS]N{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F} 10 5 + 62.101 0 0 5.5467 5.5467 85.902 0 0 0 36.15865011156764 9.220449851406514 9.220449851406514 8.037275116073346 0 2.1237125054200234 1.3010299956639813 0.5 0 VV[PS]N{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};VV[PS]N{M(Oxidation (M))|F}{I|L}PT{M(Oxidation (M))|F};VV[PS]GG{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};VVVV[C(Carbamidomethyl (C))S]TP{I|L}{M(Oxidation (M))|F};VV[PS]GG{M(Oxidation (M))|F}{I|L}PT{M(Oxidation (M))|F};VV[PS]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}PT{I|L};VV[PS]N{M(Oxidation (M))|F}{I|L}MT{I|L};VVVV[C(Carbamidomethyl (C))S]{I|L}PT{M(Oxidation (M))|F};VVMNVTTP{M(Oxidation (M))|F}{I|L};VV[PS][YQ]AP{I|L}{M(Oxidation (M))|F} 5.5467;4.8288;4.7282;4.3255;4.0103;3.852;3.6275;3.6077;3.5934;3.5369 -;-;-;-;-;-;-;-;-;- 871 + NaN NaN 167042.6 NaN 16624 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20471 83.31 NaN 244860 35 0 11377 0.261 + 16470 LSTLRQILY 9 82 553.830089072073 NaN 0 553.8298950195312 PEAK HCD FTMS 0 0 0 20467 86003.828125 0.4919342989497527 -8 0.23296356201171875 4 Unmodified _LSTLRQILY_ REV__ENST00000539080.1_1_12:122865079-122884682:-|nuORF 4.3292370932331545 0.2742679634796037 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.63218 0 0 664.4547336108332 291.13506141183194 955.5897950226652 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63218 - 79 + NaN NaN 117232.8 NaN 16625 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20472 83.313 NaN 246660 35 0 18841 0.261 + -1 KPTMLSVPI 9 73 501.2899738864172 1000.5653948396345 2 501.2906494140625 MULTI HCD FTMS 0 0 0 20467 116910.3359375 0.9923229618518736 3 -0.08867645263671875 5 Oxidation (M) _KPTM(Oxidation (M))LSVPI_ REV__ENSG00000154240|ENST00000535342|CEP112 12.240655878213236 0.2545997876781172 1 W[{I|L}T] 3 -1 14.119 0 0 1.4111 0 0 582.3443082691251 0 582.3443082691251 0 2.5293167757885193 0 0 0 0.5 0 0.28872548999643577 0 W[{I|L}T] 1.4111 - 248 + NaN NaN 111776.5 NaN 16626 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20473 83.317 NaN 264820 35 0 41033 0.261 + 17620 LYYDAIWHF 9 74 614.2951260546212 1226.5756991760422 2 614.2965087890625 MULTI HCD FTMS 0 0 0 20467 100641.6328125 0.004395827002750667 109 -2.3759536743164062 6 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 74.42276476219924 0.007657080072768255 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 64.464 0 0 5.2556 5.2556 88.383 0 0 0 21.702898994217193 18.142813412979493 18.142813412979493 12.557809497117844 0 2.2614393726401687 1.6989700043360187 0 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[HG]|PP}E{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[HG]|PP}{M(Oxidation (M))|F}E;[Y{I|L}]Y{[HG]|PP}[YQ]H{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 5.2556;4.2318;4.0323;3.9214;3.6433;3.5242;3.452;3.4306;3.3734;3.1838 +;-;-;-;-;-;-;-;-;- + 1511 NaN NaN 124352.6 NaN 16627 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20474 83.32 NaN 139860 35 0 15456 0.263 + 26262 SQQFELIL 8 45 489.26868699432595 976.5228210554519 2 489.26904296875 MULTI HCD FTMS 0 0 0 20467 59266.57421875 0.3166576407187988 4 -0.11820220947265625 7 Unmodified _SQQFELIL_ REV__ENSG00000187823|ENST00000695839|RTL4 24.020572477871973 0.4170589785259073 1 {I|L}{I|L}{I|L} 3 -1 35.445 0 0 3.6297 0 0 619.2601521958297 0 619.2601521958297 0 19.960762528683702 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L} 3.6297 + + 8 NaN NaN 99212.8 NaN 16628 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20475 83.323 NaN 74249 35 0 4485 0.261 + 22581 QSSTMNGIQDL 11 46 597.2766574497413 1192.5387619662824 2 597.2763671875 MULTI HCD FTMS 0 0 0 20467 20199.330078125 0.542144049952045 1 -0.02954864501953125 8 Unmodified _QSSTMNGIQDL_ REV__ENSG00000136153|ENST00000377534|LMO7;REV__nc|ENSG00000136153|Q8WWI1-2|LMO7;REV__nc|ENSG00000136153|Q8WWI1-3|LMO7;REV__nc|ENSG00000136153|Q8WWI1-4|LMO7;REV__nc|ENSG00000136153|Q8WWI1-5|LMO7;REV__nc|ENSG00000136153|Q8WWI1|LMO7 10.315234532428624 0.3672054350828177 1 {I|L}QD{I|L} 4 -1 43.928 0 0 3.6836 0 0 705.276027336443 0 705.276027336443 0 36.938200260161125 0 0 0 1.5 0 0 0 {I|L}QD{I|L} 3.6836 + + 33 NaN NaN 94498.9 NaN 16629 3844 20467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20477 83.328 NaN 1140600 35 0 47918 0.327 + 23885 RSSKQLVDI 9 95 523.3036148573681 1044.592676781536 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20476 1198973.875 0.6073264592678441 16 -0.46456146240234375 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 1 QV 2 7 11.722 0 0 1.1221 0 0 546.3258412853455 268.12384973697505 814.4496910223206 0 0 0 0 0 0.4247425010840047 0 0 0 QV 1.1221 - 42 + NaN NaN 257624.2 NaN 16630 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20478 83.333 NaN 847980 35 0 64631 0.261 -1 ACAISIDVVM 10 86 547.76470954321 1093.5148661532198 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20476 24802.689453125 0.2606523014742943 8 -0.2381744384765625 2 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))AISIDVVM(Oxidation (M))_ ENST00000550963.1_1_12:72004384-72005014:-|nuORF 20.453626601364224 0.3197956946484955 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPTT 9 -1 53.822 0 0 4.922 0 0 0 60.971318670880834 60.971318670880834 3.1116583991882862 0 0 0 0 0 2 0.8494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPTT 4.922 - 2076 NaN NaN 210998.6 NaN 16631 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20479 83.336 NaN 291660 35 0 49686 0.261 + -1 SFLQIMCESL 10 68 622.2874991526695 1242.560445372139 2 622.3033447265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _SFLQIM(Oxidation (M))C(Carbamidomethyl (C))ESL_ REV__OR5H14|p.K98M|1|0.14|ENSG00000236032|chr3:98149678-98149678|A/T|missense_variant 13.90604991867851 0.3810395177745597 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NES{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 11 -1 + 61.982 0 0 4.9882 4.9882 82.93 0 0 0 19.030899869919438 16.575773191777934 16.575773191777934 3.38818556553381 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]GGES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RP]GES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NE[YQ]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG][{I|L}P]GES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]GGE[YQ]{M(Oxidation (M))|F};[YN]{I|L}[{I|L}P]GES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]N[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RP]GE[YQ]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]GG[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F} 4.9882;4.7156;4.1834;3.7548;3.4878;3.4792;3.4566;3.1923;2.95;2.9167 -;-;-;-;-;-;-;-;-;- 448 NaN NaN 127289.8 NaN 16632 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20480 83.34 NaN 384530 35 0 54905 0.261 + 33317 YFTSNSWVW 9 63 595.2683269981943 1188.5221010631885 2 595.2687377929688 MULTI HCD FTMS 0 0 0 20476 83169.7890625 0.8518200769409818 1 -0.02950286865234375 4 Unmodified _YFTSNSWVW_ ENSG00000197601|ENST00000354817|FAR1;ENST00000427163.1_1_13:90823702-90823903:+|nuORF 29.081581746732265 0.1154664336125038 1 SWVW 4 5 40.244 0 0 3.386 0 0 612.2562123029312 0 612.2562123029312 0 33.41079423967915 0 0 0 1.3807196863200843 0 0.3494850021680094 0 + SWVW 3.386 + + 116 NaN NaN 134178.3 NaN 16633 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20481 83.343 NaN 504140 35 0 193670 0.261 -1 0 42 510.8129573420404 1019.6113617508809 2 510.81329345703125 MULTI HCD FTMS 0 0 0 20476 144828.09375 0.6177522809486529 5 -0.14105987548828125 5 NaN NaN 1 {I|L}V{M(Oxidation (M))|F} 3 -1 11.427 0 0 1.1207 0 0 131.13326373750255 526.2655733697874 657.3988371072899 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.1207 - 21 + NaN NaN 156968 NaN 16634 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20482 83.346 NaN 200140 35 0 24523 0.261 + -1 TMQPLRMLM 9 68 576.7823332856138 1151.5501136380276 2 575.793212890625 MULTI HCD FTMS 0 0 0 20476 32181.10546875 0.43645231293110215 5 -0.14105987548828125 6 2 Oxidation (M) _TM(Oxidation (M))QPLRM(Oxidation (M))LM_ REV__ENSG00000120498|ENST00000374333|TEX11;REV__nc|ENSG00000120498|Q8IYF3|TEX11;REV__TEX11|p.D528Lfs*5|1|0.13|ENSG00000120498|chrX:70629682-70629683|-/AG|frameshift_variant;REV__TEX11|p.E527Vfs*12|1|0.13|ENSG00000120498|chrX:70629684-70629685|-/AGACACAGAAGAGACCTTTA|frameshift_variant 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F}EQ 3 -1 24.922 0 0 2.1642 0 0 133.07315215209638 611.2835787408811 744.3567308929776 0 0 0 0 0 0 0 0.7302046884880937 0.3807196863200844 {M(Oxidation (M))|F}EQ 2.1642 - 93 + NaN NaN 112621.8 NaN 16635 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20483 83.35 NaN 181440 35 0 13820 0.261 + 28900 TWFTAGAKLLF 11 49 627.8474905822936 1253.6804282313872 2 627.8480224609375 MULTI HCD FTMS 0 0 0 20476 77952.65625 0.05626029640659977 42 -1.021820068359375 7 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 46.0223103267499 0.09816448733256712 1 {[WT]|[RM]}{M(Oxidation (M))|F}TAQ[K{I|L}]{I|L}{M(Oxidation (M))|F} 10 2 + 38.963 0 0 3.1079 3.1079 83.204 0 0 0 12.993493689375839 6.165827977365623 6.165827977365623 9.164539485499251 0 2.309894379144197 0 0 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQ[K{I|L}]{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG][K{I|L}]{I|L}{M(Oxidation (M))|F} 3.1079;2.3768 -;+ + 74 + NaN NaN 112976.4 NaN 16636 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20484 83.353 NaN 139350 35 0 26144 0.261 + 17042 LYKEDYHKT 9 38 598.8038445912365 NaN 0 598.8045043945312 PEAK HCD FTMS 0 0 0 20476 22192.591796875 0.6153367052835439 1 -0.02950286865234375 8 Unmodified _LYKEDYHKT_ ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;nc|ENSG00000183091|P20929-4|NEB 4.3292370932331545 0.2742679634796037 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97725.2 NaN 16637 3845 20476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20486 83.358 NaN 696860 35 0 31127 0.327 -1 0 101 531.8170281056758 1061.6195032781516 2 531.8171997070312 MULTI HCD FTMS 0 0 0 20485 770569.375 0.7513193523001234 23 -0.681549072265625 1 NaN NaN 1 D 1 -1 8.6536 0 0 0.81513 0 0 105.07907001526901 838.4669283502561 943.5459983655252 0 0 0 0 0 0.3252574989159953 0 0.3807196863200844 0 D 0.81513 - 198 + NaN NaN 199104.3 NaN 16638 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20487 83.362 NaN 285840 35 0 44953 0.261 + 7445 FVTSIDVVL 9 47 496.7866820769819 991.5588112207638 2 496.7869567871094 MULTI HCD FTMS 0 0 0 20485 319161.15625 0.6759638674307837 3 -0.07868194580078125 2 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 42.09456458481378 0.05572955244001856 1 DVV{I|L} 4 5 55.433 0 0 5.5905 0 0 547.2999351936078 0 547.2999351936078 0 47.98577533287428 0 0 0 1.5 0 0.8494850021680094 0 + DVV{I|L} 5.5905 + + 73 NaN NaN 130304.9 NaN 16639 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20488 83.366 NaN 353380 35 0 41814 0.261 + 13459 KYPENFFLL 9 59 585.8132425088911 1169.6119320845821 2 585.8133544921875 MULTI HCD FTMS 0 0 0 20485 190195.765625 0.0009593307617366796 279 -6.6440582275390625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 51.41523569358685 0.02959097413485123 1 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 66.799 0 0 5.7112 5.7112 88.148 0 0 0 5.959471728614581 40.88173990731855 5.959471728614581 9.208187539523756 0 2.4291746928241125 0 0 0.6643943297944485 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][YT]GPN{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.7112;4.924;3.5215;3.4256;3.2035 +;-;-;-;- + 459 NaN NaN 132873.8 NaN 16640 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20489 83.369 NaN 826180 35 0 119220 0.261 + 21577 PYNDYFEYF 9 65 629.2585969444475 1256.502640955695 2 629.25830078125 MULTI HCD FTMS 0 0 0 20485 395603.53125 0.06632278340791786 -6 0.1705780029296875 4 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 79.59630418116434 0.005983006570063981 1 DY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 6 3 68.523 0 0 5.4535 0 0 374.15831191230626 0 374.15831191230626 0 56.55094536019677 0 0 0 2.274227503252014 0 0.6139829889124311 0 + DY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 5.4535 + + 255 NaN NaN 207313.8 NaN 16641 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20490 83.372 NaN 578100 35 0 176130 0.263 + 1616 AYVVFVTTL 9 66 506.7891859275155 1011.5638189218311 2 506.789306640625 MULTI HCD FTMS 0 0 0 20485 162388.5 0.39561681438762186 -3 0.09517669677734375 5 Unmodified _AYVVFVTTL_ ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B 38.15118350030904 0.07383188072201104 1 AMV{M(Oxidation (M))|F}VT[{I|L}T] 8 2 35.508 0 0 3.5102 0 0 131.12639323999355 0 131.12639323999355 0 13.82576888900239 0 0 0 0 0 0.6747425010840047 0 AMV{M(Oxidation (M))|F}VT[{I|L}T] 3.5102 - 208 + NaN NaN 173883.1 NaN 16642 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20491 83.376 NaN 120720 35 0 11000 0.261 -1 IYWMVNYNF 9 50 633.286252547791 1264.557952162382 2 633.2855834960938 MULTI HCD FTMS 0 0 0 20485 49426.5859375 0.9903265308486427 1 -0.02962493896484375 6 Oxidation (M) _IYWM(Oxidation (M))VNYNF_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 30.636539890814138 0.10832830463492794 1 NYN{M(Oxidation (M))|F} 4 -1 43.928 0 0 3.4738 0 0 708.3291727391984 0 708.3291727391984 0 38.44335023848103 0 0 0 1.5 0 0 0 NYN{M(Oxidation (M))|F} 3.4738 + + 44 NaN NaN 103818.7 NaN 16643 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20492 83.379 NaN 246050 35 0 29913 0.264 + 8694 HGCTQFFL 8 57 476.7206994356542 951.4268459381084 2 476.7204895019531 MULTI HCD FTMS 0 0 0 20485 62820.0078125 0.8261038366498876 6 -0.1790771484375 7 Unmodified _HGCTQFFL_ REV__ENST00000493268.1_1_7:154595624-154650193:+|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.99471 0 0 132.92997201408338 521.335420519135 654.2653925332183 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.99471 + + 27 + NaN NaN 129682.3 NaN 16644 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20493 83.383 NaN 85861 35 0 8845.8 0.261 -1 GGAGSGECL 9 49 404.1699808015649 NaN 0 404.1697998046875 PEAK HCD FTMS 0 0 0 20485 23588.3203125 0.5325577953805323 2 -0.05915069580078125 8 Carbamidomethyl (C) _GGAGSGEC(Carbamidomethyl (C))L_ ENST00000593146.1_3_19:1452985-1457289:+|nuORF 4.75600775471527 0.27219989241163056 1 W 1 -1 3.9794 0 0 0.49352 0 0 336.088575029108 281.1311434381469 617.2197184672549 0 0 0 0 0 0 0 0 0 W 0.49352 - 10 + NaN NaN 100800.4 NaN 16645 3846 20485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20495 83.387 NaN 1869000 35 0 257400 0.327 + 12268 KLPALFFL 8 67 474.7995276574421 947.5845023816843 2 474.7995300292969 MULTI HCD FTMS 0 0 0 20494 1023144.25 0.8793745374238539 -2 0.0591278076171875 1 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 86.12129899796855 0.01802651791127688 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 71.717 0 0 7.5684 7.5684 95.847 0 0 0 18.12334338466485 48.35213083746822 18.12334338466485 57.894555931861476 0 2.3494850021680094 0 0 1.2638793319624577 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[PA]{I|L}K{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[PA]K{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[PA]{I|L}{I|L}K 7.5684;1.4587;1.3269;1.141 +;-;-;- + 102 NaN NaN 363189.9 NaN 16646 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20496 83.392 NaN 893170 35 0 121170 0.261 + 955 AYEKFFLLL 9 83 572.3260214375528 1142.6374899419054 2 572.3136596679688 MULTI HCD FTMS 0 0 0 20494 31765.767578125 0.5412921448158996 2 -0.0490570068359375 2 Unmodified _AYEKFFLLL_ ENSG00000198121|ENST00000683809|LPAR1;nc|ENSG00000198121|Q92633-2|LPAR1 27.628801355627647 0.12213550946336599 1 {I|L}{M(Oxidation (M))|F}QCE{M(Oxidation (M))|F}{I|L}{I|L} 8 6 57.01 0 0 4.9893 0 0 131.11972766299908 0 131.11972766299908 0 22.05357105775503 0 0 0 0.3054621874040891 0 1.3116042352767734 1.3494850021680094 {I|L}{M(Oxidation (M))|F}QCE{M(Oxidation (M))|F}{I|L}{I|L} 4.9893 - 1382 + NaN NaN 217838.4 NaN 16647 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20497 83.395 NaN 1052000 35 0 101350 0.261 + 7638 FYINTGTLQF 10 82 602.3049533418007 1202.5953537504013 2 602.3053588867188 MULTI HCD FTMS 0 0 0 20494 506897.5625 0.659369508208663 -2 0.0591278076171875 3 Unmodified _FYINTGTLQF_ ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant 114.4966697963812 4.563610280778346E-05 1 [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q 9 1 81.851 0 0 6.8062 0 0 0 162.05332201053457 162.05332201053457 48.0830704979502 0 0 0 0 2.6549471895720984 0 1.6989700043360187 0.5994850021680094 + [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q 6.8062 + + 2408 NaN NaN 253646 NaN 16648 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20498 83.399 NaN 747150 35 0 92620 0.261 + 26132 SPMDIFDMF 9 108 567.7281169239906 1133.441680914781 2 567.7279663085938 MULTI HCD FTMS 0 0 0 20494 290076 0.4770312094013018 -33 0.9451751708984375 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 54.773552608820026 0.024892918755467567 1 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS + + 53.8 13.812 3.0959 4.7466 4.7466 61.163 0 0 0 0 39.820618910682484 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7466 - 708 + NaN NaN 191081.6 NaN 16649 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20499 83.402 NaN 794390 35 0 213740 0.261 + -1 LITIWEEM 8 86 525.7631189440821 1049.511684954964 2 525.7806396484375 MULTI HCD FTMS 0 0 0 20494 21451.759765625 0.8053629115282162 -2 0.0591278076171875 5 Oxidation (M) _LITIWEEM(Oxidation (M))_ REV__ENSG00000088387|ENST00000682017|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-4|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9;REV__nc|ENSG00000088387|Q9BZ29-6|DOCK9;REV__nc|ENSG00000088387|Q9BZ29|DOCK9 20.871210003555333 0.44023077629866025 1 {I|L}{I|L}[PS]YPDV{M(Oxidation (M))|F} 9 -1 + 40.502 0 0 3.8592 3.8592 87.566 0 0 0 8.776130044249662 17.46384873496404 8.776130044249662 19.287655268723476 0 0 1.5228787452803376 0.5484550065040282 0 {I|L}{I|L}[PS]YPDV{M(Oxidation (M))|F};[WH]{[RE]|[WV]}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]S[{I|L}P]PDV{M(Oxidation (M))|F};[EP]P{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F};[WH][H{I|L}]PDV{M(Oxidation (M))|F};[WH]P[H{I|L}]DV{M(Oxidation (M))|F};{I|L}{I|L}[PS]Y{[{M(Oxidation (M))|F}D]|MM}[VP];{I|L}{I|L}[PS]Y[MT][EP];[YT]DP[{I|L}P]MT{I|L};{I|L}T{[{M(Oxidation (M))|F}D]|MM}[{I|L}P]MT{I|L} 3.8592;2.0214;1.9099;1.2833;0.93787;0.86242;0.70232;0.70232;0.68358;0.62401 -;-;-;-;-;-;-;-;-;- 805 NaN NaN 213231.1 NaN 16650 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20500 83.405 NaN 1632400 35 0 429110 0.261 + 7543 FYAHIIPFL 9 84 560.8132547779669 1119.6119566227337 2 560.814697265625 MULTI HCD FTMS 0 0 0 20494 435340.46875 0.41061473772275964 -5 0.14434814453125 6 Unmodified _FYAHIIPFL_ ENSG00000131238|ENST00000642050|PPT1;nc|ENSG00000131238|P50897-2|PPT1 79.93452657146344 0.0058735632865073864 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HH{I|L}P{M(Oxidation (M))|F} 8 4 49.914 0 0 4.4582 0 0 0 128.0713329664574 128.0713329664574 24.86494082808356 0 0 0 0 1.3494850021680094 1.6989700043360187 0.3054621874040891 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HH{I|L}P{M(Oxidation (M))|F} 4.4582 - 1458 NaN NaN 335628.4 NaN 16651 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20501 83.409 NaN 130040 35 0 17197 0.261 + 7533 FYADHPFIFL 10 51 635.3188922894755 1268.6232316457508 2 635.318359375 MULTI HCD FTMS 0 0 0 20494 47736.1953125 0.10325575105842404 12 -0.3463287353515625 7 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 19.256988751693697 0.33098864134661865 1 C{M(Oxidation (M))|F}{I|L} 3 8 31.198 0 0 2.4592 0 0 887.4393788068375 0 887.4393788068375 0 28.098943791441968 0 0 0 0.5 0 0 0 C{M(Oxidation (M))|F}{I|L} 2.4592 - 19 NaN NaN 116592.2 NaN 16652 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20502 83.412 NaN 338660 35 0 46255 0.261 -1 STWDHMMCPGV 11 57 640.2493960237872 1278.4842391143743 2 640.2493896484375 MULTI HCD FTMS 0 0 0 20494 116464.0078125 0.1892114061300087 -6 0.1705780029296875 8 Oxidation (M) _STWDHM(Oxidation (M))MCPGV_ ENST00000596842.5_1_19:18970283-18970517:+|nuORF 7.608950283845883 0.38555039536024605 1 PYNDY{M(Oxidation (M))|F}E 7 -1 84.813 0 0 6.6339 0 0 0 347.10077844791255 347.10077844791255 53.61510116613701 0 0 0 0 2.0356668758921828 2 0 0 PYNDY{M(Oxidation (M))|F}E 6.6339 - 276 + NaN NaN 139698.5 NaN 16653 3847 20494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20504 83.417 NaN 499760 35 0 109340 0.327 + 3865 EPLAESITDVL 11 72 593.8137723400666 1185.6129917469332 2 593.8138427734375 MULTI HCD FTMS 0 0 0 20503 200491.40625 0.10749587674653939 7 -0.20536041259765625 1 Unmodified _EPLAESITDVL_ ENSG00000143384|ENST00000369026|MCL1 43.77239144664712 0.11265467298873516 1 TDV{I|L} 4 7 45.79 0 0 3.8621 0 0 739.3756174527076 0 739.3756174527076 0 36.81031895404267 0 0 0 1.1549471895720984 0 0.3807196863200844 0 + TDV{I|L} 3.8621 + + 165 NaN NaN 158291.5 NaN 16654 3848 20503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20505 83.421 NaN 172440 35 0 41284 0.261 + 14563 LFIKVKANPF 10 45 588.8603632971182 1175.7061736610362 2 588.8607177734375 MULTI HCD FTMS 0 0 0 20503 71384.40625 0.7421741244417167 1 -0.01953125 2 Unmodified _LFIKVKANPF_ REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1 15.847184025352803 0.36288280428275715 1 {I|L}{[QN]|[E{I|L}]|[KN]} 3 -1 20.458 0 0 1.74 0 0 802.4700419245113 0 802.4700419245113 0 9.999999999999998 0 0 0 1 0 0 0 {I|L}{[QN]|[E{I|L}]|[KN]} 1.74 - 28 + NaN NaN 109099.5 NaN 16655 3848 20503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20506 83.425 NaN 224490 35 0 21702 0.261 + 12878 KYFPYLVLL 9 63 578.3442384743402 1154.6739240154802 2 578.3443603515625 MULTI HCD FTMS 0 0 0 20503 40762.5 0.058882010994920006 25 -0.7305755615234375 3 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 20.453626601364224 0.18364154288633264 1 {I|L}V{I|L}{I|L} 4 5 33.047 0 0 2.8621 0 0 698.345018455275 0 698.345018455275 0 25.344406447039063 0 0 0 0.5 0 0 0 + {I|L}V{I|L}{I|L} 2.8621 + + 87 NaN NaN 117691.9 NaN 16656 3848 20503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20507 83.428 NaN 131740 35 0 14655 0.261 + 6837 FPSVLVEEL 9 48 516.7842528606658 1031.5539527881315 2 516.7843017578125 MULTI HCD FTMS 0 0 0 20503 27002.767578125 0.4637384260082292 2 -0.05240631103515625 4 Unmodified _FPSVLVEEL_ ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2 41.8396318013385 0.056899836730939755 1 VEE{I|L} 4 5 42.607 0 0 4.1304 0 0 543.3073597638687 0 543.3073597638687 0 31.80523450795789 0 0 0 1.305462187404089 0 0 0 + VEE{I|L} 4.1304 + + 50 NaN NaN 133890.2 NaN 16657 3848 20503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20508 83.432 NaN 159020 35 0 19707 0.261 + 5346 FFSYATQTF 9 77 556.2569822795665 1110.499411625933 2 556.257080078125 MULTI HCD FTMS 0 0 0 20503 35306.53125 0.6139831677676078 3 -0.0870513916015625 5 Unmodified _FFSYATQTF_ ENSG00000164344|ENST00000264690|KLKB1 14.838274106304384 0.23215694253501695 1 [YV]TD[HD]SK{M(Oxidation (M))|F} 9 8 + 61.59 0 0 5.5462 5.5462 92.336 0 0 0 24.583428324247123 28.435815256728247 24.583428324247123 61.590475125574855 0 0.8494850021680094 2 0.3252574989159953 0 [YV]TD[HD]SK{M(Oxidation (M))|F} 5.5462 - 284 NaN NaN 118289.6 NaN 16658 3848 20503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20510 83.436 NaN 742150 35 0 63839 0.327 + 15157 LMSLIINTF 9 101 534.2939096770834 1066.5732664209668 2 534.2944946289062 MULTI HCD FTMS 0 0 0 20509 377353.15625 0.10996578041283522 26 -0.766632080078125 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 134.295615338601 0.00034446139420701925 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 79.319 0 0 7.4368 7.4368 92.253 0 0 0 6.473338569443371 56.55423566569887 6.473338569443371 12.460762528683702 0 2.2302046884880937 0 1.3921590589602533 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}{[CP]|[EA]}{M(Oxidation (M))|F} 7.4368;6.2685;4.8968;4.2139;3.2081;2.7824;2.7299;2.3041 +;-;-;-;-;-;-;- + 1358 NaN NaN 191132.5 NaN 16659 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20511 83.441 NaN 734350 35 0 32472 0.261 -1 0 109 545.316932783597 1088.619312633994 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20509 309083.6875 0.3968138473644821 24 -0.7110443115234375 2 NaN NaN 1 TTD{I|L}N{M(Oxidation (M))|F}AP{M(Oxidation (M))|F} 9 -1 45.452 0 0 4.1752 0 0 64.13048103090621 0 64.13048103090621 0 15.938558086458045 0 0 0 0 0 0.28872548999643577 0.9049471895720985 TTD{I|L}N{M(Oxidation (M))|F}AP{M(Oxidation (M))|F} 4.1752 - 2853 + NaN NaN 199481.4 NaN 16660 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20512 83.444 NaN 412740 35 0 80592 0.261 + 10457 IPDILDGPEL 10 65 541.2924384510449 1080.5703239688896 2 541.2926025390625 MULTI HCD FTMS 0 0 0 20509 141098.484375 0.1367770560324837 6 -0.18582916259765625 3 Unmodified _IPDILDGPEL_ ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 45.69961567697781 0.09594615698576985 1 {I|L}DGPE{I|L} 6 4 41.005 0 0 3.7948 0 0 438.24693495918126 0 438.24693495918126 0 29.30523450795789 0 0 0 1.4802046884880937 0 0.3807196863200844 0 + {I|L}DGPE{I|L} 3.7948 + + 236 NaN NaN 158006.5 NaN 16661 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20513 83.448 NaN 357060 35 0 43700 0.261 -1 FPAEFAMYL 9 70 552.7562302762097 1103.4979076192194 2 552.7576293945312 MULTI HCD FTMS 0 0 0 20509 146958.78125 0.8200350077388098 -9 0.24925994873046875 4 Oxidation (M) _FPAEFAM(Oxidation (M))YL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 5 -1 51.964 0 0 4.709 0 0 444.2020436017594 0 444.2020436017594 0 33.38045629527841 0 0 0 1.75 0 0 0 {M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 4.709 + + 226 NaN NaN 129951.4 NaN 16662 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20514 83.451 NaN 438160 35 0 63525 0.264 -1 0 66 406.2482467771253 810.4819406210506 2 406.24859619140625 MULTI HCD FTMS 0 0 0 20509 230803.359375 0.06392210240695201 -7 0.1934051513671875 5 NaN NaN 1 P 1 -1 9.6041 0 0 1.185 0 0 590.3509266823772 120.05034815006093 710.4012748324382 0 0 0 0 0 0.5 0 0 0 P 1.185 - 21 + NaN NaN 163586.2 NaN 16663 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20515 83.454 NaN 343750 35 0 37254 0.261 -1 PDNWEMAYTE 10 68 636.2479181370968 1270.4812833409935 2 636.2486572265625 MULTI HCD FTMS 0 0 0 20509 155905.125 0.47191271415239455 -3 0.07868194580078125 6 Oxidation (M) _PDNWEM(Oxidation (M))AYTE_ ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.6945 0 0 666.2282725483873 0 666.2282725483873 0 10.21144069483583 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.6945 - 235 NaN NaN 150651.7 NaN 16664 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20516 83.458 NaN 170200 35 0 21284 0.261 + 1242 AYLPVNESFGF 11 61 622.303526459436 1242.5924999856718 2 622.3054809570312 MULTI HCD FTMS 0 0 0 20509 21058.4296875 0.018563082660140014 11 -0.3301544189453125 7 Unmodified _AYLPVNESFGF_ ENSG00000167658|ENST00000309311|EEF2 33.4449034751529 0.1791669456720762 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NE[YQ]{M(Oxidation (M))|F} 10 3 + 40.328 0 0 3.2454 3.2454 88.517 0 0 0 12.880325230808154 4.648867983026506 4.648867983026506 40.32760017977509 0 1.3494850021680094 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NE[YQ]{M(Oxidation (M))|F} 3.2454 - 109 NaN NaN 118617.3 NaN 16665 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20517 83.461 NaN 285110 35 0 20981 0.261 + 11547 IYSPLLFKYF 10 65 645.8602284743139 1289.7059040154277 2 645.8615112304688 MULTI HCD FTMS 0 0 0 20509 54973.0625 0.08545378765209484 16 -0.4812164306640625 8 Unmodified _IYSPLLFKYF_ ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 49.55428908609986 0.07941048486997417 1 [Y{I|L}]S[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 10 0 + 56.233 0 0 4.3601 4.3601 90.265 0 0 0 36.45119965945284 8.819459175083608 8.819459175083608 56.232581098819026 0 1.7530834337684313 2 0.3807196863200844 0 + + [Y{I|L}]S[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 4.3601 + + 107 + NaN NaN 120960.3 NaN 16666 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20518 83.464 NaN 64498 35 0 12293 0.264 + 2030 DDQEVFVEVYN 11 38 452.87027676613224 NaN 0 452.8807678222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _DDQEVFVEVYN_ ENSG00000135677|ENST00000258145|GNS;nc|ENSG00000135677|P15586-2|GNS 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94706.3 NaN 16667 3849 20509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20520 83.469 NaN 1292200 35 0 47715 0.327 + 25626 SGLLTKPSRS 10 108 523.3036148573681 1044.592676781536 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20519 1174808.375 0.595085702519548 21 -0.625823974609375 1 Unmodified _SGLLTKPSRS_ REV__ENSG00000146147|ENST00000502396|MLIP;REV__ENST00000511744.1_1_6:53976250-54068425:+|nuORF;REV__LRRC1-MLIP|1|fusion;REV__LRRC1-MLIP|2|fusion;REV__nc|ENSG00000146147|Q5VWP3-1|MLIP;REV__nc|ENSG00000146147|Q5VWP3-4|MLIP 8.745405648335112 0.42901288225909884 1 Q 1 -1 10.485 0 0 1.0037 0 0 546.3254901376139 367.19705650039674 913.5225466380107 0 0 0 0 0 0.5 0 0 0 Q 1.0037 - 70 + NaN NaN 278599.5 NaN 16668 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20521 83.476 NaN 784360 35 0 206580 0.273 + 10330 ILPPTSYIF 9 80 525.7969717794742 1049.5793906257484 2 525.79736328125 MULTI HCD FTMS 0 0 0 20519 325890.125 0.9049757122317741 1 -0.03464508056640625 2 Unmodified _ILPPTSYIF_ ENST00000473764.5_1_X:48755552-48755627:+|nuORF 89.42679046578446 0.004540987215715461 1 {I|L}{I|L}PSYPT{I|L}{M(Oxidation (M))|F} 9 4 + 68.443 0 0 6.521 6.521 86.596 0 0 0 5.660834034323621 5.660834034323621 5.660834034323621 5.656300992696259 0 1.8494850021680094 1.5228787452803376 0.809894379144197 0 {I|L}{I|L}PSYPT{I|L}{M(Oxidation (M))|F};{I|L}{I|L}PS[TP]Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}PP{[MG]|[TS]}Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}P{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F};[Y{I|L}]S[{I|L}P]PT{I|L}{M(Oxidation (M))|F};[DV]{[QV]|[N{I|L}]|[RA]|[KV]}[KT]T{I|L}{M(Oxidation (M))|F} 6.521;5.9821;5.9817;5.2846;3.2156;3.1276 -;-;+;-;-;- + 682 NaN NaN 201529.2 NaN 16669 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20522 83.479 NaN 380060 35 0 195770 0.261 -1 0 49 540.3302293595764 1078.6459057859527 2 540.3305053710938 MULTI HCD FTMS 0 0 0 20519 223176.796875 0.9081148312995986 -9 0.25251007080078125 3 NaN NaN 1 {I|L} 1 -1 4.6041 0 0 0.42684 0 0 132.21859674156434 830.3214205377561 962.5400172793204 0 0 0 0 0 0 0 0 0 {I|L} 0.42684 - 4 + NaN NaN 144850 NaN 16670 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20523 83.482 NaN 412660 35 0 32229 0.261 + 477 ALSSNKLVKF 10 97 553.830089072073 NaN 0 553.830078125 PEAK HCD FTMS 0 0 0 20519 152791.40625 0.8739533455405781 -2 0.05240631103515625 4 Unmodified _ALSSNKLVKF_ REV__ENSG00000187555|ENST00000344836|USP7;REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF;REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF;REV__ENST00000567329.1_1_16:8996189-8998378:-|nuORF;REV__nc|ENSG00000187555|Q93009-3|USP7 4.897010918128616 0.3359931263921593 1 Y{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.71983 0 0 132.2373824904334 660.2846773736936 792.522059864127 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 0.71983 - 150 + NaN NaN 145333.2 NaN 16671 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20524 83.486 NaN 283790 35 0 32134 0.261 + 17621 LYYDAIWHF 9 76 614.2951260546212 1226.5756991760422 2 614.29638671875 MULTI HCD FTMS 0 0 0 20519 72581.6015625 0.003170220465776264 115 -2.5093154907226562 5 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 54.773552608820026 0.024892918755467567 1 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 55.845 0 0 4.5529 4.5529 88.426 0 0 0 5.417068069036439 5.417068069036439 5.417068069036439 19.13307538185837 0 1.9366654986684733 2 0.28872548999643577 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}][DP]H[HV]S{I|L}{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]EEV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}][WQ][RD]S{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G[RD]S{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}WHH{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}H{I|L}WH{M(Oxidation (M))|F} 4.5529;2.9931;2.8603;2.8126;2.7617;2.5349;1.9047;1.622;1.1986;1.0342 +;-;-;-;-;-;-;-;-;- + 1496 + NaN NaN 127605.3 NaN 16672 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20525 83.489 NaN 235960 35 0 53749 0.262 + 18376 MPMNVADLI 9 44 502.25096995300515 1002.4873869728103 2 502.2516174316406 MULTI HCD FTMS 0 0 0 20519 68629.265625 0.3766612972328092 -3 0.08193206787109375 6 Unmodified _MPMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 36.12702656103203 0.08312389501731911 1 AD{I|L}{I|L} 4 5 46.186 0 0 4.6071 0 0 572.2455771657084 0 572.2455771657084 0 25.21652514092061 0 0 0 1.4247425010840047 0 0 0 + AD{I|L}{I|L} 4.6071 + + 26 NaN NaN 118417.6 NaN 16673 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20526 83.492 NaN 180510 35 0 30956 0.261 -1 DYDLCASCYE 10 49 648.2317601637633 1294.4489673943265 2 648.2344970703125 MULTI HCD FTMS 0 0 0 20519 46796.49609375 0.8854406436954305 -3 0.08193206787109375 7 2 Carbamidomethyl (C) _DYDLC(Carbamidomethyl (C))ASC(Carbamidomethyl (C))YE_ ENSG00000176407|ENST00000409785|KCMF1 6.723162845929126 0.4397169348982109 1 Y{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.7736 0 0 966.3050579870819 0 966.3050579870819 0 1.9897000433601875 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 1.7736 - 12 NaN NaN 113516.5 NaN 16674 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20527 83.496 NaN 161700 35 0 17323 0.261 -1 YVYEMRDKL 9 44 616.8014322472199 NaN 0 616.80224609375 PEAK HCD FTMS 0 0 0 20519 18373.21484375 0.36693061349754036 10 -0.29727935791015625 8 Oxidation (M) _YVYEM(Oxidation (M))RDKL_ ENSG00000170606|ENST00000304858|HSPA4 4.75600775471527 0.27219989241163056 1 {M(Oxidation (M))|F}[PS]VDE{M(Oxidation (M))|F} 7 -1 14.926 0 0 1.2119 0 0 132.09858155416515 275.1394442193969 407.2380257735621 0 0 0 0 0 0 0 0.2742275032520141 0 {M(Oxidation (M))|F}[PS]VDE{M(Oxidation (M))|F} 1.2119 - 46 + NaN NaN 101243.7 NaN 16675 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20528 83.499 NaN 127920 35 0 23100 0.261 + 1243 AYLPVNESFGF 11 39 622.303526459436 1242.5924999856718 2 622.8052978515625 MULTI HCD FTMS 0 0 0 20519 23767.912109375 0.03478451943304814 13 -0.38596343994140625 9 Unmodified _AYLPVNESFGF_ ENSG00000167658|ENST00000309311|EEF2 22.65808497894818 0.2596617744649775 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NE[YQ]{M(Oxidation (M))|F} 10 3 + 40.167 0 0 3.2325 3.2325 88.504 0 0 0 12.719932023307834 8.908555305749317 8.908555305749317 40.16720697227477 0 0.8494850021680094 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NE[YQ]{M(Oxidation (M))|F} 3.2325 - 51 NaN NaN 99839.1 NaN 16676 3850 20519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20530 83.504 NaN 680860 35 0 29413 0.327 -1 0 95 531.8170281056758 1061.6195032781516 2 531.817138671875 MULTI HCD FTMS 0 0 0 20529 568590.4375 0.5543861631232668 28 -0.7772445678710938 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.1509 0 0 896.5408117271735 0 896.5408117271735 0 5.047789692996196 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1509 - 179 + NaN NaN 190472.7 NaN 16677 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20531 83.508 NaN 993920 35 0 96526 0.262 -1 0 94 414.7614696637178 827.5083863942356 2 414.76165771484375 MULTI HCD FTMS 0 0 0 20529 612411.3125 0.26416031547681695 -4 0.1165771484375 2 NaN NaN 1 P 1 -1 8.4113 0 0 1.0165 0 0 607.377341937984 120.05059229068593 727.42793422867 0 0 0 0 0 0.3807196863200844 0 0 0 P 1.0165 - 26 + NaN NaN 242030.6 NaN 16678 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20532 83.512 NaN 794620 35 0 106220 0.261 -1 LMFWCSASCCE 11 64 432.49008227218906 1294.4484174167671 3 432.49029541015625 MULTI HCD FTMS 0 0 0 20529 141640.75 0.659803022950571 -2 0.0675201416015625 3 Oxidation (M) _LM(Oxidation (M))FWCSASCCE_ ENST00000428729.1_1_6:3045620-3046031:+|nuORF 4.715918219556657 0.3982382512160552 1 PYND{M(Oxidation (M))|F} 5 -1 48.594 0 0 3.754 0 0 0 655.1713560115617 655.1713560115617 27.624853444044255 0 0 0 0 1.1331596456423734 1.154901959985743 0 0.3494850021680094 PYND{M(Oxidation (M))|F} 3.754 - 34 + NaN NaN 201886.9 NaN 16679 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20533 83.515 NaN 308720 35 0 48846 0.261 + 7446 FVTSIDVVL 9 44 496.7866820769819 991.5588112207638 2 496.786865234375 MULTI HCD FTMS 0 0 0 20529 24379.681640625 0.051634679113706054 8 -0.2297515869140625 4 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 57.47134341890925 0.0211188941628804 1 DVV{I|L} 4 5 55.433 0 0 5.5905 0 0 547.2999215752549 0 547.2999215752549 0 43.750612633917 0 0 0 1.5 0 0.8494850021680094 0 + DVV{I|L} 5.5905 + + 101 NaN NaN 140488.4 NaN 16680 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20534 83.519 NaN 822300 35 0 117830 0.261 -1 ACAISIDVVM 10 86 547.76470954321 1093.5148661532198 2 547.7755126953125 MULTI HCD FTMS 0 0 0 20529 17641.06640625 0.18539056290407954 14 -0.4136962890625 5 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))AISIDVVM(Oxidation (M))_ ENST00000550963.1_1_12:72004384-72005014:-|nuORF 26.88365393820708 0.25965138844209146 1 E{I|L}DPT{M(Oxidation (M))|F} 6 -1 45.138 0 0 4.1278 0 0 373.180051610922 0 373.180051610922 0 13.947340481202062 0 0 0 0.4247425010840047 0 1.4559771852360797 0 E{I|L}DPT{M(Oxidation (M))|F} 4.1278 - 1065 + NaN NaN 210725 NaN 16681 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20535 83.522 NaN 243980 35 0 25703 0.261 -1 FPTVVIYVM 9 68 542.7914390002423 NaN 0 542.8080444335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.2079222001251384 1 YV 2 -1 17.307 0 0 1.5972 0 0 656.391597121014 162.0234316461547 818.4150287671687 0 0 0 0 0 1.2614393726401687 0 0 0 YV 1.5972 + + 73 + NaN NaN 131916.5 NaN 16682 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20536 83.525 NaN 176390 35 0 8987.7 0.261 -1 0 82 575.8431002620255 1149.6716475908509 2 575.8431396484375 MULTI HCD FTMS 0 0 0 20529 113570.1953125 0.6710864613417884 -8 0.2413787841796875 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.60797 0 0 443.37264964338834 556.2068575494749 999.5795071928633 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60797 - 54 + NaN NaN 107974.1 NaN 16683 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20537 83.529 NaN 288480 35 0 26844 0.261 + 27844 TDEGYEHFYE 10 67 645.2526732237228 1288.4907935142455 2 645.2522583007812 MULTI HCD FTMS 0 0 0 20529 141580 1 0 0 8 Unmodified _TDEGYEHFYE_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 6.723162845929126 0.4397169348982109 1 PNM{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 7 8 47.656 0 0 3.6986 0 0 342.1206532209 0 342.1206532209 0 18.683947707303616 0 0 0 1.2302046884880937 0 0.805462187404089 0 PNM{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.6986 - 150 NaN NaN 123422.6 NaN 16684 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20538 83.532 NaN 182430 35 0 46928 0.263 -1 0 56 510.8129573420404 1019.6113617508809 2 510.8133544921875 MULTI HCD FTMS 0 0 0 20529 34302.9921875 0.14631658208366044 11 -0.325103759765625 9 NaN NaN 1 {M(Oxidation (M))|F}V{I|L}{I|L} 4 -1 11.427 0 0 1.1207 0 0 529.3277141452153 0 529.3277141452153 0 4.436974992327123 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V{I|L}{I|L} 1.1207 - 38 + NaN NaN 120617.4 NaN 16685 3851 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20540 83.537 NaN 6349500 35 0 957110 0.327 + 21578 PYNDYFEYF 9 78 629.2585969444475 1256.502640955695 2 629.2590942382812 MULTI HCD FTMS 0 0 0 20539 5964821 1 0 0 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 147.05914393524117 1.1935124485855994E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 9 0 + 97.163 0 0 7.7328 7.7328 94.013 0 0 0 2.191512336730028 54.25205716106127 2.191512336730028 19.643331241078172 0 2.274227503252014 0 1.591129063296272 1.5356668758921828 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDYE{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDYEY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGDYE{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}M{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]QDPM{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGDYEY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDPM{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][AG]DPM{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.7328;6.1695;5.7778;4.8832;4.5175;4.1549;3.3079;3.3044;3.1917;2.5786 +;-;-;-;-;-;-;-;-;- + 2259 NaN NaN 614047.9 NaN 16686 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20541 83.541 NaN 677510 35 0 89208 0.264 + 12269 KLPALFFL 8 53 474.7995276574421 947.5845023816843 2 474.7995300292969 MULTI HCD FTMS 0 0 0 20539 480103.375 0.4126404300334543 3 -0.0854339599609375 2 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 67.03532852164291 0.03311693449179614 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 56.362 0 0 5.9479 5.9479 92.901 0 0 0 1.6761279340054358 39.90803747765064 1.6761279340054358 56.36168767277148 0 2.242992819099939 0 0 0.6307196863200843 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.9479 + + 64 NaN NaN 202816 NaN 16687 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20542 83.545 NaN 949360 35 0 65262 0.261 + 19539 NSKNRLRVF 9 127 567.3298749930569 1132.6451970529138 2 567.329833984375 MULTI HCD FTMS 0 0 0 20539 324488.15625 0.7945740639845242 -4 0.11992645263671875 3 Unmodified _NSKNRLRVF_ REV__ENSG00000160789|ENST00000368300|LMNA;REV__ENST00000368298.2_1_1:156104977-156106341:+|nuORF;REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF;REV__nc|ENSG00000160789|P02545-2|LMNA;REV__nc|ENSG00000160789|P02545-3|LMNA;REV__nc|ENSG00000160789|P02545-4|LMNA;REV__nc|ENSG00000160789|P02545-5|LMNA;REV__nc|ENSG00000160789|P02545-6|LMNA 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 29.196 0 0 2.5777 0 0 558.4354935390451 0 558.4354935390451 0 9.450170277982096 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5777 - 622 + NaN NaN 227992.3 NaN 16688 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20543 83.548 NaN 585430 35 0 76963 0.261 + 13460 KYPENFFLL 9 76 585.8132425088911 1169.6119320845821 2 585.8135375976562 MULTI HCD FTMS 0 0 0 20539 281467.03125 0.0014196950211037291 285 -6.739891052246094 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 40.23920728925047 0.06424668180817725 1 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 8 6 58.541 0 0 5.0052 0 0 131.09378030837735 0 131.09378030837735 0 35.582662299506666 0 0 0 1.1382104921644451 0 0 0.3494850021680094 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 5.0052 - 1575 + NaN NaN 179168.9 NaN 16689 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20544 83.552 NaN 380400 35 0 119400 0.262 + 1617 AYVVFVTTL 9 47 506.7891859275155 1011.5638189218311 2 506.7892150878906 MULTI HCD FTMS 0 0 0 20539 102436.65625 0.2495599357229414 3 -0.0854339599609375 5 Unmodified _AYVVFVTTL_ ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B 30.224811164608877 0.11021837014094292 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}VT[{I|L}T] 7 3 31.994 0 0 3.1629 0 0 186.1354874782748 0 186.1354874782748 0 21.536757287974666 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}VT[{I|L}T] 3.1629 - 66 + NaN NaN 139304.1 NaN 16690 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20545 83.555 NaN 274830 35 0 32391 0.261 + 10092 IFGSSLFFLL 10 77 572.3260214375528 1142.6374899419054 2 572.3135986328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _IFGSSLFFLL_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|47 14.838274106304384 0.3723198072575719 1 {M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 7 6 40.143 0 0 3.5132 0 0 244.17837721992345 0 244.17837721992345 0 18.861235376907928 0 0 0 0 0 1.0484550065040281 1.3494850021680094 {M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 3.5132 - 870 NaN NaN 126573.6 NaN 16691 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20546 83.558 NaN 183140 35 0 36293 0.261 -1 LMFWCSASCCE 11 51 648.2317601637633 1294.4489673943265 2 648.2314453125 MULTI HCD FTMS 0 0 0 20539 50776.84375 0.9607531539274156 -1 0.03287506103515625 7 Oxidation (M) _LM(Oxidation (M))FWCSASCCE_ ENST00000428729.1_1_6:3045620-3046031:+|nuORF 9.38312468134398 0.3753269387758208 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[CS]M{[C(Carbamidomethyl (C))E]|[WC]}YE 10 -1 + 42.452 0 0 3.2795 3.2795 88.594 0 0 0 15.592181781659633 21.4828069691076 15.592181781659633 42.45190709918816 0 0.5 2 0.9247425010840047 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[CS]M{[C(Carbamidomethyl (C))E]|[WC]}YE 3.2795 - 72 NaN NaN 110440.7 NaN 16692 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20547 83.562 NaN 174890 35 0 34694 0.263 -1 0 53 510.8129573420404 1019.6113617508809 2 510.811767578125 MULTI HCD FTMS 0 0 0 20539 19510.548828125 0.08322063578313364 12 -0.34795379638671875 8 NaN NaN 1 {M(Oxidation (M))|F}V{I|L}{I|L} 4 -1 13.188 0 0 1.2934 0 0 529.3294841647465 0 529.3294841647465 0 7.156818820794935 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V{I|L}{I|L} 1.2934 - 62 + NaN NaN 110860.4 NaN 16693 3852 20539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20549 83.566 NaN 1964800 35 0 561230 0.327 + 7544 FYAHIIPFL 9 87 560.8132547779669 1119.6119566227337 2 560.8134765625 MULTI HCD FTMS 0 0 0 20548 1045076.0625 0.9857196013408112 1 -0.02960205078125 1 Unmodified _FYAHIIPFL_ ENSG00000131238|ENST00000642050|PPT1;nc|ENSG00000131238|P50897-2|PPT1 79.93452657146344 0.0058735632865073864 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QG]|[NA]}TTP{I|L} 9 6 52.202 0 0 4.6625 0 0 0 162.05554806211788 162.05554806211788 29.05210580613776 0 0 0 0 1.3494850021680094 1.6989700043360187 0.6989700043360187 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QG]|[NA]}TTP{I|L} 4.6625 - 820 NaN NaN 376514.1 NaN 16694 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20550 83.571 NaN 789640 35 0 112830 0.261 -1 PYSCSACGKCF 11 79 640.2493960237872 1278.4842391143743 2 640.24951171875 MULTI HCD FTMS 0 0 0 20548 615523.1875 1 0 0 2 2 Carbamidomethyl (C) _PYSCSAC(Carbamidomethyl (C))GKC(Carbamidomethyl (C))F_ ENSG00000168826|ENST00000337872|ZBTB49 31.26834338654808 0.19318467762437158 1 PYNDY{M(Oxidation (M))|F}E 7 -1 110.79 0 0 8.6661 0 0 0 347.1010659084485 347.1010659084485 73.61387589830301 0 0 0 0 2.4476212463643425 2 1.4361818737241734 0.75 PYNDY{M(Oxidation (M))|F}E 8.6661 - 2084 + NaN NaN 220113 NaN 16695 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20551 83.574 NaN 861450 35 0 257720 0.263 + 10338 ILPSDIMDF 9 84 525.7631189440821 1049.511684954964 2 525.7809448242188 MULTI HCD FTMS 0 0 0 20548 23422.087890625 0.879334893908828 3 -0.08209228515625 3 Unmodified _ILPSDIMDF_ ENSG00000118058|ENST00000534358|KMT2A;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A 18.13498045792455 0.20367413111508956 1 {I|L}{I|L}PSYPDV{M(Oxidation (M))|F} 9 4 + 47.282 0 0 4.5051 4.5051 88.936 0 0 0 14.261905377123945 26.11100950661936 14.261905377123945 24.306227294525023 0 0 1.3979400086720375 0.555462187404089 0 {I|L}{I|L}PSYPDV{M(Oxidation (M))|F};[WH]{[RE]|[WV]}Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}P[MT]{[ET]|[MV]}V{M(Oxidation (M))|F};[DV]{[QV]|[N{I|L}]|[RA]|[KV]}{[MG]|[TS]}RV{M(Oxidation (M))|F};{I|L}M{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[HK]{M(Oxidation (M))|F};[EP][{I|L}A]D[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}P[MT]C{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N;{I|L}{I|L}P[HC]YP[HA];{I|L}{I|L}PSY[MT][EP];[KC]MY[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F} 4.5051;2.1892;1.7974;1.7707;1.6039;1.4166;1.2196;1.1929;1.0955;0.93904 -;-;-;-;-;-;-;-;-;- 612 NaN NaN 222484.1 NaN 16696 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20552 83.578 NaN 554540 35 0 58175 0.261 + 7639 FYINTGTLQF 10 67 602.3049533418007 1202.5953537504013 2 602.3056030273438 MULTI HCD FTMS 0 0 0 20548 279737.40625 0.36388085016019284 4 -0.104949951171875 4 Unmodified _FYINTGTLQF_ ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant 114.4966697963812 4.563610280778346E-05 1 [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 95.249 0 0 7.9203 7.9203 90.636 0 0 0 7.269987279362624 77.5015175618958 7.269987279362624 9.164539485499262 0 2.6237125054200234 0 1.8371804965004639 0.3807196863200844 + + [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VQTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[AG]TGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VQTGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NTG[Q{I|L}]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]TGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTG[Q{I|L}]T{M(Oxidation (M))|F} 7.9203;7.1582;7.1582;6.8574;6.0954;6.0954;6.0826;5.8044;5.7989;5.0423 +;-;-;-;-;-;-;-;-;- + 1750 NaN NaN 179150.3 NaN 16697 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20553 83.581 NaN 416310 35 0 37060 0.264 -1 LMPLSVGT 8 66 417.2261568261727 NaN 0 417.2394104003906 PEAK HCD FTMS 0 0 0 20548 6752.677734375 0.8679577942128968 -1 0.02959442138671875 5 Oxidation (M) _LM(Oxidation (M))PLSVGT_ ENSG00000166454|ENST00000299575|ATMIN;nc|ENSG00000166454|O43313-2|ATMIN 5.230669730166228 0.38822285293237185 1 Y 1 -1 2.4743 0 0 0.29723 0 0 504.2872918244173 162.06003748111564 666.347329305533 0 0 0 0 0 0 0 0 0 Y 0.29723 - 8 + NaN NaN 145737.2 NaN 16698 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20554 83.585 NaN 217290 35 0 21690 0.261 + 14675 LGTVQQKR 8 61 465.2796714089369 928.5447898846738 2 465.2799377441406 MULTI HCD FTMS 0 0 0 20548 134281.40625 0.9026448176599722 -1 0.02959442138671875 6 Unmodified _LGTVQQKR_ ENSG00000119285|ENST00000366582|HEATR1 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F}Y 2 8 9.464 0 0 1.0192 0 0 129.22679578504454 486.16379724674067 615.3905930317852 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 1.0192 - 35 + NaN NaN 133202.8 NaN 16699 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20555 83.588 NaN 515010 35 0 238280 0.261 -1 0 62 423.2747597817346 844.5349666302692 2 423.27496337890625 MULTI HCD FTMS 0 0 0 20548 210118.265625 0.33161944275494826 -2 0.062469482421875 7 NaN NaN 1 A 1 -1 5.4846 0 0 0.64942 0 0 122.1054105426103 648.3821505182249 770.4875610608352 0 0 0 0 0 0 0 0 0 A 0.64942 - 8 + NaN NaN 154436.1 NaN 16700 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20556 83.591 NaN 127270 35 0 37257 0.261 + -1 LCVFCGPVF 9 48 549.7587057745185 1097.5028586158369 2 549.7588500976562 MULTI HCD FTMS 0 0 0 20548 125087.953125 1 0 0 8 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VFC(Carbamidomethyl (C))GPVF_ REV__ENSG00000163814|ENST00000296129|CDCP1;REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 9.347437153973935 0.2795965555214564 1 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7532 0 0 833.3522719471282 0 833.3522719471282 0 28.622731327798547 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.7532 + + 11 NaN NaN 100672 NaN 16701 3853 20548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20558 83.596 NaN 2466900 35 0 340490 0.327 -1 0 87 406.2482467771253 810.4819406210506 2 406.2485046386719 MULTI HCD FTMS 0 0 0 20557 3157892 0.8745934043625507 -2 0.05919647216796875 1 NaN NaN 1 PPP 3 -1 10.317 0 0 1.273 0 0 396.23539835606135 120.05050836734608 516.2859067234074 0 0 0 0 0 0.5 0 0 0 PPP 1.273 - 23 + NaN NaN 457723.4 NaN 16702 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20559 83.6 NaN 446900 35 0 49017 0.261 + 15158 LMSLIINTF 9 70 534.2939096770834 1066.5732664209668 2 534.2943725585938 MULTI HCD FTMS 0 0 0 20557 365016.59375 0.10637074032782409 31 -0.7396469116210938 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 110.6747026088012 0.0028322563155251486 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 78.976 0 0 7.4047 7.4047 92.259 0 0 0 7.147642715192504 63.914412723804546 7.147642715192504 12.703037561203843 0 2.305462187404089 0 1.4802046884880937 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]V[DV]V{M(Oxidation (M))|F} 7.4047;6.2136;4.6798;2.9003;2.5888;1.8855 +;-;-;-;-;- + 406 NaN NaN 150703.5 NaN 16703 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20560 83.604 NaN 453160 35 0 18734 0.261 -1 0 96 545.316932783597 1088.619312633994 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20557 296300.5 0.3804022862934807 29 -0.7207794189453125 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3415 0 0 923.5405295302816 0 923.5405295302816 0 1.7989247940391095 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3415 - 496 + NaN NaN 157447.7 NaN 16704 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20561 83.607 NaN 821680 35 0 96148 0.261 + 11880 KFFEEVLLF 9 83 586.3243264101898 1170.6340998871794 2 586.325439453125 MULTI HCD FTMS 0 0 0 20557 268753.71875 0.9867326452765877 1 -0.02623748779296875 4 Unmodified _KFFEEVLLF_ ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL 41.95555342248728 0.056367691549927025 1 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 8 4 62.614 0 0 5.3487 0 0 132.116600884212 0 132.116600884212 0 41.95168783987789 0 0 0 1.6747425010840047 0 0 0.3494850021680094 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 5.3487 - 2094 + NaN NaN 214732.6 NaN 16705 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20562 83.611 NaN 353590 35 0 37598 0.261 -1 DVNYNSSYMY 10 64 636.2479181370968 1270.4812833409935 2 636.248046875 MULTI HCD FTMS 0 0 0 20557 267335.3125 0.8092032440284024 2 -0.052490234375 5 Oxidation (M) _DVNYNSSYM(Oxidation (M))Y_ ENSG00000161405|ENST00000346872|IKZF3;nc|ENSG00000161405|Q9UKT9-10|IKZF3;nc|ENSG00000161405|Q9UKT9-11|IKZF3;nc|ENSG00000161405|Q9UKT9-12|IKZF3;nc|ENSG00000161405|Q9UKT9-13|IKZF3;nc|ENSG00000161405|Q9UKT9-15|IKZF3;nc|ENSG00000161405|Q9UKT9-16|IKZF3;nc|ENSG00000161405|Q9UKT9-2|IKZF3;nc|ENSG00000161405|Q9UKT9-3|IKZF3;nc|ENSG00000161405|Q9UKT9-4|IKZF3;nc|ENSG00000161405|Q9UKT9-5|IKZF3;nc|ENSG00000161405|Q9UKT9-6|IKZF3;nc|ENSG00000161405|Q9UKT9-7|IKZF3;nc|ENSG00000161405|Q9UKT9-8|IKZF3;nc|ENSG00000161405|Q9UKT9-9|IKZF3 4.897010918128616 0.4493830473644964 1 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.6353 0 0 666.2276315488209 0 666.2276315488209 0 11.795065615788332 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.6353 - 135 NaN NaN 143114.7 NaN 16706 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20563 83.614 NaN 826500 35 0 87386 0.263 + 19015 NAVLFETVL 9 79 503.28432856095674 1004.5541041887135 2 503.28460693359375 MULTI HCD FTMS 0 0 0 20557 272607.6875 0.9288392009516415 -1 0.02960205078125 6 Unmodified _NAVLFETVL_ ENSG00000213983|ENST00000397120|AP1G2;ENST00000460049.6_1_14:24033375-24036327:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556152.1_1_14:24033689-24033869:-|nuORF 72.96794272382148 0.008127836904478181 1 {[QG]|[NA]}V{I|L}{M(Oxidation (M))|F}ETV{I|L} 9 0 + 66.679 0 0 6.6376 6.6376 92.159 0 0 0 5.061216379505069 45.995550514185425 5.061216379505069 20.04632015720552 0 2.0994850021680094 0 0.4247425010840047 0.3054621874040891 + + {[QG]|[NA]}V{I|L}{M(Oxidation (M))|F}ETV{I|L};{[TV]|[{I|L}S]}[VP][YN]TV{I|L} 6.6376;4.6421 +;- + 227 NaN NaN 208745.2 NaN 16707 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20564 83.617 NaN 309160 35 0 47657 0.261 + 7447 FVTSIDVVL 9 49 496.7866820769819 991.5588112207638 2 496.78680419921875 MULTI HCD FTMS 0 0 0 20557 97442.921875 0.20637816674904566 11 -0.321624755859375 7 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 57.47134341890925 0.0211188941628804 1 DVV{I|L} 4 5 55.433 0 0 5.5905 0 0 547.3002768864277 0 547.3002768864277 0 48.0866814795592 0 0 0 1.5 0 0.8494850021680094 0 + DVV{I|L} 5.5905 + + 88 NaN NaN 133615.9 NaN 16708 3854 20557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20566 83.622 NaN 1117100 35 0 43477 0.327 + 23886 RSSKQLVDI 9 102 523.3036148573681 1044.592676781536 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20565 1117061.75 0.5658348122147713 26 -0.6748733520507812 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 1 Q 1 8 11.114 0 0 1.064 0 0 502.29921792772626 411.22351244761217 913.5227303753384 0 0 0 0 0 0.7134679910804405 0 0 0 + Q 1.064 + + 81 + NaN NaN 253543.6 NaN 16709 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20567 83.627 NaN 665060 35 0 75888 0.261 -1 LFSVMSLVIF 10 80 586.3243264101898 1170.6340998871794 2 586.3236694335938 MULTI HCD FTMS 0 0 0 20565 128017.375 0.47001739608529564 2 -0.04911041259765625 2 Oxidation (M) _LFSVM(Oxidation (M))SLVIF_ ENST00000361804.4_1_10:112328768-112337656:+|nuORF 26.88365393820708 0.25965138844209146 1 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 8 -1 59.079 0 0 5.0468 0 0 132.11686887006664 0 132.11686887006664 0 44.18488818359222 0 0 0 1.274227503252014 0 0 0.3252574989159953 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 5.0468 - 1128 + NaN NaN 183751 NaN 16710 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20568 83.63 NaN 259330 35 0 41979 0.261 + 17622 LYYDAIWHF 9 71 614.2951260546212 1226.5756991760422 2 614.2957763671875 MULTI HCD FTMS 0 0 0 20565 113691.296875 0.00496581045850038 120 -2.5994338989257812 3 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 92.8221339359638 0.0044520161739443126 1 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 76.008 0 0 6.1967 6.1967 89.129 0 0 0 27.440840204505506 7.632192780232771 7.632192780232771 9.5701324614095 0 2.411819340634495 2 0.3807196863200844 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YY[PG]V{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YY[RP]{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]Y[W{I|L}]{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{M(Oxidation (M))|F}{I|L};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[YQ]H{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F} 6.1967;5.4165;4.9574;4.6667;3.7704;3.6143;3.3814;3.3538;3.3502;3.2712 +;+;-;-;-;-;-;-;-;- + 974 + NaN NaN 121215.1 NaN 16711 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20569 83.634 NaN 210680 35 0 15005 0.264 -1 0 59 425.7524185915981 849.4902842499962 2 425.752685546875 MULTI HCD FTMS 0 0 0 20565 227620.390625 1 0 0 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.542 0 0 684.4077627429634 0 684.4077627429634 0 9.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.542 - 30 + NaN NaN 117634.5 NaN 16712 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20570 83.637 NaN 338650 35 0 24280 0.261 + 23281 RHILPNLLM 9 90 553.830089072073 NaN 0 553.830078125 PEAK HCD FTMS 0 0 0 20565 114929.3828125 0.6573859163620218 3 -0.081939697265625 5 Unmodified _RHILPNLLM_ REV__ENST00000267068.5_2_13:33110836-33110986:-|nuORF 4.3292370932331545 0.2742679634796037 1 TD 2 -1 7.0649 0 0 0.63898 0 0 65.12893038068326 821.4383470987249 886.5672774794082 0 0 0 0 0 0 0 0.3252574989159953 0 TD 0.63898 - 60 + NaN NaN 137926.2 NaN 16713 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20571 83.64 NaN 448760 35 0 109670 0.261 + 19952 NYGDYFNVF 9 68 569.745563694345 1137.47657445549 2 569.745849609375 MULTI HCD FTMS 0 0 0 20565 273014.25 0.6474309574563872 -4 0.11830902099609375 6 Unmodified _NYGDYFNVF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 72.96794272382148 0.008127836904478181 1 [YN][DG]Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F} 9 0 + 69.459 0 0 6.1064 6.1064 88.136 0 0 0 5.391362274856917 62.46970615301926 5.391362274856917 9.208187539523749 0 2.1861818737241734 0 0.3494850021680094 0.6989700043360187 + + [YN][DG]Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F};[YN][DG]Y{M(Oxidation (M))|F}GGV{M(Oxidation (M))|F} 6.1064;5.2969 +;- + 202 NaN NaN 162659.5 NaN 16714 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20572 83.644 NaN 227450 35 0 98891 0.261 + -1 VIKIMTIVF 9 53 540.3302293595764 1078.6459057859527 2 540.3303833007812 MULTI HCD FTMS 0 0 0 20565 180619.703125 0.7349484065075613 -4 0.11830902099609375 7 Oxidation (M) _VIKIM(Oxidation (M))TIVF_ REV__ENSG00000112759|ENST00000371755|SLC29A1;REV__ENST00000472176.1_1_6:44197340-44197857:+|nuORF;REV__nc|ENSG00000112759|Q99808-2|SLC29A1 4.75600775471527 0.31496297302216103 1 [{I|L}V]N 3 -1 24.181 0 0 2.2418 0 0 0 749.427710555737 749.427710555737 19.57711861032834 0 0 0 0 0 1.5228787452803376 0 0 [{I|L}V]N 2.2418 - 17 NaN NaN 118472.5 NaN 16715 3855 20565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20574 83.649 NaN 2001500 35 0 216980 0.327 -1 0 102 414.7614696637178 827.5083863942356 2 414.7617492675781 MULTI HCD FTMS 0 0 0 20573 2180981.25 0.9407544950421252 1 -0.022857666015625 1 NaN NaN 1 P 1 -1 8.4113 0 0 1.0165 0 0 607.377341937984 120.05048547916249 727.4278274171465 0 0 0 0 0 0.3807196863200844 0 0 0 P 1.0165 - 25 + NaN NaN 394294.7 NaN 16716 3856 20573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20575 83.653 NaN 702630 35 0 29384 0.261 -1 0 98 531.8170281056758 1061.6195032781516 2 531.8170166015625 MULTI HCD FTMS 0 0 0 20573 593039.4375 0.5782243890382089 33 -0.7261886596679688 2 NaN NaN 1 D 1 -1 9.7763 0 0 0.92089 0 0 61.05280483601002 882.4940279596311 943.5468327956412 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.92089 - 448 + NaN NaN 193828 NaN 16717 3856 20573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20576 83.657 NaN 989410 35 0 146290 0.261 + 24369 RYILEPFFI 9 63 599.3368687292173 1196.6591845252344 2 599.8385620117188 MULTI HCD FTMS 0 0 0 20573 172849.25 0.14874835376229656 -5 0.144561767578125 3 Unmodified _RYILEPFFI_ ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant 26.268140514670165 0.13340543277302316 1 [Y{I|L}]R{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L} 9 2 + 69.09 0 0 5.7736 5.7736 92.901 0 0 0 19.621892823592972 63.40411276716473 19.621892823592972 69.09047512557486 0 1.9247425010840047 1.3979400086720375 0 0 [Y{I|L}]R{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L} 5.7736 - 83 NaN NaN 242531.1 NaN 16718 3856 20573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20577 83.66 NaN 376910 35 0 39177 0.261 + 21051 PLTTFQDQLN 10 89 588.7982633503276 1175.581973767455 2 588.8011474609375 MULTI HCD FTMS 0 0 0 20573 81928.140625 0.6441199740479918 2 -0.05568695068359375 4 Unmodified _PLTTFQDQLN_ ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1;nc|ENSG00000089127|P00973-4|OAS1 24.020572477871973 0.2864316864133941 1 [TP]{I|L}T{M(Oxidation (M))|F} 5 7 39.366 0 0 3.3487 0 0 0 613.2594389376301 613.2594389376301 22.600453850821367 0 0 0 0 0 1.154901959985743 1.0114393726401687 0 [TP]{I|L}T{M(Oxidation (M))|F} 3.3487 - 421 NaN NaN 140198.5 NaN 16719 3856 20573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20578 83.663 NaN 143440 35 0 19336 0.261 + 6802 FPSDLDLDMF 10 43 608.2652597348726 1214.5159665365452 2 608.265625 MULTI HCD FTMS 0 0 0 20573 55902.64453125 0.6046823738170181 3 -0.0851898193359375 5 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 41.8396318013385 0.12944265636084 1 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 53.003 0 0 4.3641 0 0 559.2640858380875 0 559.2640858380875 0 40.300084529637985 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.3641 + + 90 NaN NaN 114416.9 NaN 16720 3856 20573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20579 83.666 NaN 202510 35 0 65133 0.262 + 10437 IPDEADFLL 9 47 516.7659187431916 1031.5172845531831 2 516.766357421875 MULTI HCD FTMS 0 0 0 20573 103974.2421875 0.521028586390378 -2 0.052490234375 6 Unmodified _IPDEADFLL_ CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8 21.74664581756881 0.17247014374749275 1 D{M(Oxidation (M))|F}{I|L}{I|L} 4 5 38.479 0 0 3.7303 0 0 525.2438221662125 0 525.2438221662125 0 22.280774262326105 0 0 0 0.8494850021680094 0 0.3252574989159953 0 + D{M(Oxidation (M))|F}{I|L}{I|L} 3.7303 + + 16 NaN NaN 111744 NaN 16721 3856 20573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20581 83.671 NaN 2451700 35 0 365790 0.327 + 21579 PYNDYFEYF 9 76 629.2585969444475 1256.502640955695 2 629.2588500976562 MULTI HCD FTMS 0 0 0 20580 1994063.125 0.3343039338481406 5 -0.157684326171875 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 134.295615338601 0.00034446139420701925 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 9 0 + 91.328 0 0 7.2684 7.2684 93.215 0 0 0 0.8712801896759714 57.51525333825434 0.8712801896759714 19.049471895720984 0 2.3494850021680094 0 1.591129063296272 1.110924374808178 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDYE{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NDYEY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGDYE{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGDYEY{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE][WE]{[CA]|SS}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[YE][WE]{[CA]|SS}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F};EE[WY]{[CA]|SS}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 7.2684;5.7523;5.6514;4.6503;4.4383;3.3962;2.6556;1.6135;0.98889 +;-;-;-;-;-;-;-;- + 813 NaN NaN 455215.3 NaN 16722 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20582 83.676 NaN 284780 35 0 26536 0.261 -1 0 84 575.8431002620255 1149.6716475908509 2 575.8433227539062 MULTI HCD FTMS 0 0 0 20580 105104.9921875 0.6210655628651751 -2 0.04911041259765625 2 NaN NaN 1 T{I|L}R 3 -1 17.435 0 0 1.5165 0 0 310.1806616915746 466.2425631158813 776.4232248074559 0 0 0 0 0 0 0 0.4247425010840047 0 T{I|L}R 1.5165 - 151 + NaN NaN 142187.4 NaN 16723 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20583 83.679 NaN 291580 35 0 37054 0.262 + 12270 KLPALFFL 8 52 474.7995276574421 947.5845023816843 2 474.7995910644531 MULTI HCD FTMS 0 0 0 20580 143742.296875 0.12354398299428003 8 -0.24627685546875 3 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 46.92087301778293 0.1468278106890452 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 [K{I|L}] + + 50.394 5.2288 2.168 5.3181 5.3181 62.144 0 0 0 0 50.39381281052492 0 0 0 1.774227503252014 0 0 0 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.3181 - 53 + NaN NaN 125322 NaN 16724 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20584 83.683 NaN 491440 35 0 43434 0.261 + 17894 MILELDPTF 9 72 547.7753373336277 1093.5361217340553 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20580 183944.4375 0.03610637589768131 42 -0.7975387573242188 4 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 125.62461146993168 0.0008703235425492373 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 74.505 0 0 6.8132 6.8132 94.839 0 0 0 6.13524183632309 41.261233821950114 6.13524183632309 74.50495338161453 0 2.4177353201839438 2 0.3494850021680094 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 6.8132 + + 623 NaN NaN 159222.7 NaN 16725 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20585 83.686 NaN 323170 35 0 119070 0.261 + -1 CCIFCDMNS 9 55 596.2012075488183 1190.3878621644365 2 596.2010498046875 MULTI HCD FTMS 0 0 0 20580 62763.359375 0.6950399831121854 -1 0.022857666015625 5 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))CIFC(Carbamidomethyl (C))DMNS_ REV__CASP8|p.D303G|1|0.17|ENSG00000064012|chr2:201284921-201284921|A/G|missense_variant;REV__CASP8|p.D303V|1|0.5|ENSG00000064012|chr2:201284921-201284921|A/T|missense_variant;REV__CASP8|p.H304D|1|0.17|ENSG00000064012|chr2:201284923-201284923|C/G|missense_variant;REV__CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;REV__CASP8|p.L315V|1|0.13|ENSG00000064012|chr2:201284956-201284956|C/G|missense_variant;REV__CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;REV__ENSG00000064012|ENST00000673742|CASP8;REV__nc|ENSG00000064012|Q14790-2|CASP8;REV__nc|ENSG00000064012|Q14790-3|CASP8;REV__nc|ENSG00000064012|Q14790-4|CASP8;REV__nc|ENSG00000064012|Q14790-9|CASP8 0.6014990680409731 0.3464572424761564 1 E{I|L}Y 3 -1 14.693 0 0 1.2343 0 0 130.89367378728645 651.2757052057249 782.1693789930114 0 0 0 0 0 0 0 0 0 E{I|L}Y 1.2343 - 52 + NaN NaN 137799.7 NaN 16726 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20586 83.689 NaN 131560 35 0 24498 0.261 -1 LYLDDGGDCDF 11 47 645.2526732237228 1288.4907935142455 2 645.252197265625 MULTI HCD FTMS 0 0 0 20580 26522.1015625 0.18732943609620004 6 -0.18389892578125 6 Carbamidomethyl (C) _LYLDDGGDC(Carbamidomethyl (C))DF_ ENSG00000110076|ENST00000265459|NRXN2;ENST00000466324.1_1_11:64444212-64481216:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2 3.2813086475875832 0.40452996145431686 1 EY{M(Oxidation (M))|F} 3 -1 33.43 0 0 2.5945 0 0 831.3083363263687 0 831.3083363263687 0 15.86696871556164 0 0 0 0.75 0 0.4247425010840047 0 EY{M(Oxidation (M))|F} 2.5945 - 31 NaN NaN 108066.3 NaN 16727 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20587 83.693 NaN 120230 35 0 12317 0.264 + 7448 FVTSIDVVL 9 45 496.7866820769819 991.5588112207638 2 496.7869873046875 MULTI HCD FTMS 0 0 0 20580 15757.3466796875 0.033373099431015685 14 -0.42375946044921875 7 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 34.10243960390752 0.09241788333544565 1 DVV{I|L} 4 5 50.745 0 0 5.1177 0 0 547.2993224617442 0 547.2993224617442 0 45.26084705832169 0 0 0 1.5 0 0.3807196863200844 0 + DVV{I|L} 5.1177 + + 61 NaN NaN 101665.9 NaN 16728 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20588 83.696 NaN 112520 35 0 11182 0.261 -1 YNWCAWNF 8 47 580.7371139578764 NaN 0 580.737060546875 PEAK HCD FTMS 0 0 0 20580 30675.642578125 0.7014306015556055 1 -0.03282928466796875 8 Carbamidomethyl (C) _YNWC(Carbamidomethyl (C))AWNF_ ENST00000552115.5_1_12:62946839-62946965:+|nuORF 19.438996006549623 0.38500361301801034 1 V 1 -1 9.732 0 0 0.83935 0 0 165.0815276810319 892.2816386982603 1057.3631663792921 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.83935 - 4 + NaN NaN 115624.6 NaN 16729 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20589 83.699 NaN 148960 35 0 9871.7 0.261 + 31390 VYAGGFTLTV 10 53 514.2755755517486 1026.536598170297 2 514.2763671875 MULTI HCD FTMS 0 0 0 20580 7496.56396484375 0.14093188650870017 -1 0.022857666015625 9 Unmodified _VYAGGFTLTV_ REV__ENSG00000108576|ENST00000650711|SLC6A4;REV__nc|ENSG00000108576|P31645-2|SLC6A4 10.823927491677226 0.4098686510432541 1 {[QG]|[NA]}V{I|L}{M(Oxidation (M))|F}[YT]S{I|L} 9 -1 + 21.602 0 0 2.1043 2.1043 86.798 0 0 0 1.9087745650595913 1.539843494254999 1.539843494254999 21.60151216962362 0 0.8494850021680094 0 0.3494850021680094 0 {[QG]|[NA]}V{I|L}{M(Oxidation (M))|F}[YT]S{I|L} 2.1043 - 67 + NaN NaN 101936.9 NaN 16730 3857 20580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20591 83.704 NaN 821710 35 0 60947 0.327 -1 0 113 567.3298749930569 1132.6451970529138 2 567.3299560546875 MULTI HCD FTMS 0 0 0 20590 349422.53125 0.8556308615750037 2 -0.06238555908203125 1 NaN NaN 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 31.96 0 0 2.8217 0 0 445.34735877342 0 445.34735877342 0 17.980734984209512 0 0 0 0 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8217 - 616 + NaN NaN 215134.5 NaN 16731 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20592 83.709 NaN 459780 35 0 44200 0.261 + 13461 KYPENFFLL 9 71 585.8132425088911 1169.6119320845821 2 585.8135375976562 MULTI HCD FTMS 0 0 0 20590 214279.5 0.0010808070057924289 291 -6.887489318847656 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 57.782 0 0 4.9403 4.9403 86.153 0 0 0 4.237796609374058 27.6047653249357 4.237796609374058 9.208187539523749 0 2.079689690656103 0 0 0.6861818737241735 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[WT]|[RM]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]YV[KP]{M(Oxidation (M))|F};[Y{I|L}]{[WT]|[RM]}{[ES]|[DT]|[{I|L}C]}MK{I|L};[Y{I|L}]{[WT]|[RM]}{[ES]|[DT]|[{I|L}C]}M{I|L}K 4.9403;4.153;2.3682;2.0885;1.2325;1.0443;0.42754 +;-;-;-;-;-;- + 794 NaN NaN 159571.4 NaN 16732 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20593 83.712 NaN 375480 35 0 65132 0.261 + 5683 FPAEFAMYL 9 68 552.7562302762097 1103.4979076192194 2 552.7572631835938 MULTI HCD FTMS 0 0 0 20590 179210.375 1 0 0 3 Oxidation (M) _FPAEFAM(Oxidation (M))YL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 48.345845343767074 0.03388484103555672 1 E{M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 6 3 58.237 0 0 5.2775 0 0 315.15782363105626 0 315.15782363105626 0 39.65350013324773 0 0 0 2.1861818737241734 0 0 0 + E{M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 5.2775 + + 177 NaN NaN 137239.4 NaN 16733 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20594 83.716 NaN 430170 35 0 58017 0.261 + 5684 FPAEFAMYL 9 77 552.7562302762097 1103.4979076192194 2 553.2597045898438 MULTI HCD FTMS 0 0 0 20590 102677.4296875 1 0 0 4 Oxidation (M) _FPAEFAM(Oxidation (M))YL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 48.345845343767074 0.03388484103555672 1 E{M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 6 3 60.266 0 0 5.4614 0 0 315.15806777168126 0 315.15806777168126 0 43.27623146104628 0 0 0 2.2614393726401687 0 0 0 + E{M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 5.4614 + + 126 NaN NaN 156661.4 NaN 16734 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20595 83.719 NaN 153800 35 0 14632 0.261 + 6812 FPSFLTNSL 9 51 513.2685767460276 NaN 0 513.2683715820312 PEAK HCD FTMS 0 0 0 20590 79952.875 1 0 0 5 Unmodified _FPSFLTNSL_ ENSG00000101639|ENST00000506447|CEP192 57.72198328787511 0.02966902416627691 1 SNT{I|L}{M(Oxidation (M))|F}S 6 7 35.922 0 0 3.5062 0 0 131.0933189839796 241.0984285943969 372.1917475783765 0 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 SNT{I|L}{M(Oxidation (M))|F}S 3.5062 - 50 + NaN NaN 104846.2 NaN 16735 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20596 83.722 NaN 115780 35 0 21260 0.261 + -1 YNIKHFFMK 9 45 622.3169883832127 1242.6194238332253 2 622.3177490234375 MULTI HCD FTMS 0 0 0 20590 47397.625 0.7247131170305724 5 -0.15106964111328125 6 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 15.847184025352803 0.2234401846867398 1 [YN]{I|L} 3 -1 40.942 0 0 3.2948 0 0 0 849.4057940783517 849.4057940783517 36.338031200885155 0 0 0 0 1 1.6989700043360187 0 0.3494850021680094 [YN]{I|L} 3.2948 + + 12 NaN NaN 98362.1 NaN 16736 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20597 83.725 NaN 116960 35 0 14149 0.262 + 17879 MIHYMVLI 8 46 510.27433446419 NaN 0 510.2918395996094 PEAK HCD FTMS 0 0 0 20590 21730.720703125 0.6558707830461667 2 -0.06238555908203125 7 Unmodified _MIHYMVLI_ ENSG00000176142|ENST00000319172|TMEM39A;ENST00000486235.5_1_3:119165863-119180852:-|nuORF 6.354104778181461 0.38822285293237185 1 {I|L}V{I|L} 3 5 12.703 0 0 1.2472 0 0 131.05674339229012 559.2133272760374 690.2700706683274 0 0 0 0 0 0 0 0 0 {I|L}V{I|L} 1.2472 - 21 + NaN NaN 102797.2 NaN 16737 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20598 83.729 NaN 43538 35 0 4884.6 0.261 -1 MCEQCDVFYC 10 36 438.4803616937293 1312.419255681388 3 438.4814453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))CEQC(Carbamidomethyl (C))DVFYC_ ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9;nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9 0.13989180515190558 0.47456323509232307 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1128 0 0 1147.3405183540426 0 1147.3405183540426 0 -4.859856381998782 -4.859856381998782 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1128 + + 1 + NaN NaN 97724.2 NaN 16738 3858 20590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20600 83.734 NaN 1714200 35 0 229700 0.327 -1 0 78 406.2482467771253 810.4819406210506 2 406.2485046386719 MULTI HCD FTMS 0 0 0 20599 1811855.25 0.5018020411431615 3 -0.0953521728515625 1 NaN NaN 1 PP 2 -1 9.6927 0 0 1.1959 0 0 493.29408769311937 120.05052362613515 613.3446113192545 0 0 0 0 0 0.5 0 0 0 PP 1.1959 - 35 + NaN NaN 337429.9 NaN 16739 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20601 83.738 NaN 828710 35 0 278560 0.261 + 10331 ILPPTSYIF 9 80 525.7969717794742 1049.5793906257484 2 525.7807006835938 MULTI HCD FTMS 0 0 0 20599 69615.4453125 0.1933175704664626 10 -0.30559539794921875 2 Unmodified _ILPPTSYIF_ ENST00000473764.5_1_X:48755552-48755627:+|nuORF 30.224811164608877 0.11021837014094292 1 VDTKY{I|L}{M(Oxidation (M))|F} 7 5 41.247 0 0 3.9298 0 0 165.11242823671654 0 165.11242823671654 0 11.849104129495416 0 0 0 1.079689690656103 0 0.3494850021680094 0 VDTKY{I|L}{M(Oxidation (M))|F} 3.9298 - 854 + NaN NaN 233139.4 NaN 16740 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20602 83.742 NaN 728450 35 0 59585 0.261 -1 YLLLPHTMN 9 95 559.2882152256027 NaN 0 559.3002319335938 PEAK HCD FTMS 0 0 0 20599 7031.25390625 0.7044155579873098 -1 0.02950286865234375 3 Oxidation (M) _YLLLPHTM(Oxidation (M))N_ OR52N4|p.P288H|1|0.58|ENSG00000181074|chr11:5755603-5755603|C/A|missense_variant 13.50788311687929 0.22978952576613207 1 TQYV{I|L} 5 -1 12.907 0 0 1.156 0 0 131.0655274625039 378.1459139459594 509.2114414084633 0 0 0 0 0 0 0 0 0 TQYV{I|L} 1.156 - 773 + NaN NaN 206576.4 NaN 16741 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20603 83.745 NaN 430780 35 0 182770 0.263 -1 0 69 423.2747597817346 844.5349666302692 2 423.2749938964844 MULTI HCD FTMS 0 0 0 20599 455932.21875 0.7195756535785568 4 -0.1215667724609375 4 NaN NaN 1 N 1 -1 5.4846 0 0 0.64942 0 0 510.35895452265044 217.10804163150627 727.4669961541567 0 0 0 0 0 0 0 0 0 N 0.64942 - 14 + NaN NaN 147232.5 NaN 16742 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20604 83.748 NaN 197600 35 0 26519 0.261 -1 PYSCSACGKCF 11 52 640.2493960237872 1278.4842391143743 2 640.2496337890625 MULTI HCD FTMS 0 0 0 20599 147620.140625 0.2398287239585105 6 -0.1839447021484375 5 2 Carbamidomethyl (C) _PYSC(Carbamidomethyl (C))SAC(Carbamidomethyl (C))GKCF_ ENSG00000168826|ENST00000337872|ZBTB49 7.101721422024254 0.3877749288398915 1 PYND 4 -1 61.983 0 0 4.8481 0 0 0 786.2748699371119 786.2748699371119 30.784634594678266 0 0 0 0 1.305462187404089 2 0 0 PYND 4.8481 - 94 + NaN NaN 124909.5 NaN 16743 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20605 83.752 NaN 206750 35 0 18036 0.264 -1 0 53 417.23920490196934 832.4638568707387 2 417.2394104003906 MULTI HCD FTMS 0 0 0 20599 205174.53125 0.5736006461496392 4 -0.1215667724609375 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.6793 0 0 667.3813963988622 0 667.3813963988622 0 -0.7133375178436552 -0.7133375178436552 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6793 - 17 + NaN NaN 111956.2 NaN 16744 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20606 83.755 NaN 119010 35 0 21030 0.261 + 8217 GRKELQAK 8 45 465.2796714089369 928.5447898846738 2 465.2798156738281 MULTI HCD FTMS 0 0 0 20599 72449.53125 0.4870085572603743 5 -0.1510772705078125 7 Unmodified _GRKELQAK_ REV__ENSG00000084731|ENST00000264712|KIF3C 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.59066 0 0 129.22736368805244 649.2266859997709 778.4540496878233 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.59066 - 13 + NaN NaN 93090.2 NaN 16745 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20607 83.758 NaN 419130 35 0 38641 0.261 -1 LDCVLSLTCP 10 89 589.2822940988233 NaN 0 589.2987670898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))VLSLTC(Carbamidomethyl (C))P_ ENST00000553854.1_1_14:82128143-82128728:+|nuORF 14.838274106304384 0.3224471714378502 1 TT 2 -1 12.708 0 0 1.0801 0 0 764.3166113732883 207.11397730045158 971.4305886737399 0 0 0 0 0 0 0 0.5629529932484498 0 TT 1.0801 - 179 + NaN NaN 144576.1 NaN 16746 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20608 83.762 NaN 157850 35 0 16471 0.261 + 5261 FFDTRYLLE 9 50 602.3049533418007 1202.5953537504013 2 603.3074340820312 MULTI HCD FTMS 0 0 0 20599 74843.4921875 0.2717040371615259 10 -0.30559539794921875 9 Unmodified _FFDTRYLLE_ REV__ENSG00000131446|ENST00000307826|MGAT1;REV__MGAT1|p.R298Lfs*7|1|0.47|ENSG00000131446|chr5:180792055-180792079|GGGCGTATGCAGGCCCGCCCCTGCC/-|frameshift_variant 7.289230182591677 0.29575926068275815 1 E{I|L}NDDN{I|L}{[QN]|[E{I|L}]|[KN]} 9 -1 24.843 0 0 2.0658 0 0 129.0918506938845 0 129.0918506938845 0 10.969100130080557 0 0 0 0 0 0.5 0 E{I|L}NDDN{I|L}{[QN]|[E{I|L}]|[KN]} 2.0658 - 276 + NaN NaN 99384.6 NaN 16747 3859 20599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20610 83.767 NaN 908190 35 0 34275 0.327 -1 0 83 523.3036148573681 1044.592676781536 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20609 1049939.5 0.5318348066428475 31 -0.6312484741210938 1 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 3 -1 16.4 0 0 1.57 0 0 0 650.3803714438985 650.3803714438985 6.166076174007408 0 0 0 0 0 1.2218487496163564 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 1.57 - 79 NaN NaN 223872.2 NaN 16748 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20611 83.771 NaN 802530 35 0 158500 0.261 + 17519 LYTVVVYDF 9 88 559.7912377083074 1117.5679224834148 2 560.8133544921875 MULTI HCD FTMS 0 0 0 20609 19933.208984375 0.561437437410565 -1 0.0328826904296875 2 Unmodified _LYTVVVYDF_ ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 19.256988751693697 0.19398022840297344 1 EAA[DG]VVTP{I|L}{M(Oxidation (M))|F} 11 8 + 36.718 0 0 3.2856 3.2856 80.244 0 0 0 11.100895625623657 3.8896300926780896 3.8896300926780896 2.2184874961635614 0 1 0 0 0 EAA[DG]VVTP{I|L}{M(Oxidation (M))|F};EAA[DG]VS{I|L}P{I|L}{M(Oxidation (M))|F};EAA[DG]VV{I|L}TP{M(Oxidation (M))|F};EAA[DG]VVT{I|L}P{M(Oxidation (M))|F};EAA[DG]VS{I|L}{I|L}P{M(Oxidation (M))|F};YRR[KA]YD{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KQ]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WR] 3.2856;3.0871;2.6448;2.6231;2.4246;1.3475;0.31421 -;-;-;-;-;-;- 872 + NaN NaN 207348.6 NaN 16749 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20612 83.775 NaN 582790 35 0 38981 0.261 + 15159 LMSLIINTF 9 97 534.2939096770834 1066.5732664209668 2 534.2947998046875 MULTI HCD FTMS 0 0 0 20609 195373.53125 0.05693447233732446 37 -0.6791839599609375 3 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 103.35351024395868 0.004027461563756449 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 65.186 0 0 6.1117 6.1117 89.708 0 0 0 0.8893999196139646 44.78270188710894 0.8893999196139646 12.188105454342804 0 2.2059771852360797 0 1.1549471895720984 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}T[AG]V{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}T{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}T{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}[YG]AA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{I|L}[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}T[MT]AA 6.1117;4.969;4.9207;3.778;3.5547;2.9725;2.5061;2.039;1.6779;1.4967 +;-;-;-;-;-;-;-;-;- + 1819 NaN NaN 168787.8 NaN 16750 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20613 83.778 NaN 432470 35 0 82548 0.261 + 19016 NAVLFETVL 9 72 503.28432856095674 1004.5541041887135 2 503.2845764160156 MULTI HCD FTMS 0 0 0 20609 130545.2265625 0.44479862266673426 5 -0.15106201171875 4 Unmodified _NAVLFETVL_ ENSG00000213983|ENST00000397120|AP1G2;ENST00000460049.6_1_14:24033375-24036327:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556152.1_1_14:24033689-24033869:-|nuORF 49.55428908609986 0.03219431099695407 1 V{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}ETV{I|L} 9 2 + 49.759 0 0 4.9534 4.9534 90.981 0 0 0 34.27494066097715 7.900217704352457 7.900217704352457 49.75949072601743 0 2.610924374808178 0 0.3807196863200844 0 V{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}ETV{I|L} 4.9534 - 161 + NaN NaN 177267.6 NaN 16751 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20614 83.781 NaN 298680 35 0 11663 0.261 -1 0 100 545.316932783597 1088.619312633994 2 545.3169555664062 MULTI HCD FTMS 0 0 0 20609 223451.96875 0.2868764642289818 35 -0.6628036499023438 5 NaN NaN 1 VEG{I|L} 4 -1 16.696 0 0 1.5337 0 0 65.12266525063167 622.2326143854124 687.3552796360441 0 0 0 0 0 0 0 0.3252574989159953 0 VEG{I|L} 1.5337 - 202 + NaN NaN 128235.6 NaN 16752 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20615 83.785 NaN 402380 35 0 37447 0.261 + 19774 NYAWVYYHL 9 73 614.7942781955768 1227.5740034579535 2 614.7935791015625 MULTI HCD FTMS 0 0 0 20609 123895.796875 0.7323640313345251 22 -0.5377883911132812 6 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.02929079705179888 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 55.155 0 0 4.493 4.493 82.677 0 0 0 19.365429718850727 25.19004637477064 19.365429718850727 4.648167490521168 0 1.6861818737241734 1.3979400086720375 0 0.5774509799928715 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWVYQ{[RE]|[WV]};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWVY[AG]{[RE]|[WV]};[YN]AWV[PG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};[YN]AWV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[WD];[YN]AWV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PG]{M(Oxidation (M))|F};[Y{I|L}]EEVYQ{[RE]|[WV]} 4.493;4.1144;3.753;3.6476;3.4755;3.3643;3.0782;2.8702;2.833;2.8236 +;-;-;-;-;-;-;-;-;- + 729 NaN NaN 152192.2 NaN 16753 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20616 83.788 NaN 176900 35 0 13806 0.261 + 6163 FPEILCIHL 9 72 542.796300692669 1083.5780484521379 2 542.8079833984375 MULTI HCD FTMS 0 0 0 20609 34741.34765625 0.4750669805083222 -3 0.09521484375 7 Unmodified _FPEILCIHL_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 50.855029805455786 0.030374663808198754 1 {M(Oxidation (M))|F}PE{I|L}{I|L}[YR]{M(Oxidation (M))|F} 8 4 + 61.719 0 0 5.6959 5.6959 88.441 0 0 0 10.221157291141836 9.969938634286137 9.969938634286137 9.969938634286137 0 1.1989700043360187 0 0.6549471895720984 0.3494850021680094 {M(Oxidation (M))|F}PE{I|L}{I|L}[YR]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PE{I|L}{I|L}{[ES]|[DT]|[{I|L}C]}H{I|L} 5.6959;4.7758 -;+ + 105 + NaN NaN 112717.8 NaN 16754 3860 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20618 83.793 NaN 2831400 35 0 531110 0.327 + 24370 RYILEPFFI 9 76 599.3368687292173 1196.6591845252344 2 599.3372192382812 MULTI HCD FTMS 0 0 0 20617 1688363.125 1 0 0 1 Unmodified _RYILEPFFI_ ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant 66.45667989310934 0.010234776021261575 1 [Y{I|L}]R{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 2 + 84.522 0 0 7.0632 7.0632 93.774 0 0 0 15.475373959437846 35.01348757971677 15.475373959437846 29.534021960761265 0 2.274227503252014 1.2218487496163564 0.75 0 [Y{I|L}]R{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YR]{I|L}{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}RY{I|L}E{I|L};[Y{I|L}]NK[VG]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}RY{I|L}{I|L}E;{[QN]|[E{I|L}]|[KN]}[Y{I|L}]RP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]GGK[VG]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}ER[Y{I|L}]{I|L};{[QN]|[E{I|L}]|[KN]}[Y{I|L}][VG]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}RE[Y{I|L}]{I|L} 7.0632;4.5951;4.2296;3.8452;3.4547;3.4509;3.0794;3.0024;2.6814;2.6568 -;+;-;-;-;-;-;-;-;- + 1330 NaN NaN 519906.1 NaN 16755 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20619 83.797 NaN 853690 35 0 86955 0.264 -1 0 87 414.7614696637178 827.5083863942356 2 414.7616882324219 MULTI HCD FTMS 0 0 0 20617 671450.75 0.2896266583043326 6 -0.1873779296875 2 NaN NaN 1 P 1 -1 8.4113 0 0 1.0165 0 0 607.3773724555622 120.05039392642811 727.4277663819903 0 0 0 0 0 0.3807196863200844 0 0 0 P 1.0165 - 22 + NaN NaN 209290.9 NaN 16756 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20620 83.801 NaN 695180 35 0 26371 0.261 -1 0 107 531.8170281056758 1061.6195032781516 2 531.81689453125 MULTI HCD FTMS 0 0 0 20617 447270.8125 0.4360972912403246 38 -0.6761016845703125 3 NaN NaN 1 DNDTV 5 -1 9.3277 0 0 0.87863 0 0 114.17255611193907 400.20234094791255 514.3748970598516 0 0 0 0 0 0.24299281909993908 0 0.6747425010840047 0.2614393726401688 DNDTV 0.87863 - 665 + NaN NaN 188728.2 NaN 16757 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20621 83.804 NaN 875870 35 0 84320 0.261 + 26133 SPMDIFDMF 9 109 567.7281169239906 1133.441680914781 2 567.7279052734375 MULTI HCD FTMS 0 0 0 20617 311821.375 0.5127915706002112 -19 0.5497817993164062 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 54.773552608820026 0.024892918755467567 1 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS + + 53.465 9.0411 2.0265 4.7171 4.7171 61.111 0 0 0 0 40.991034940849325 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7171 - 325 + NaN NaN 221298.6 NaN 16758 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20622 83.808 NaN 331640 35 0 72730 0.261 -1 NYIKYCMF 8 63 569.7584997639025 NaN 0 569.7457275390625 PEAK HCD FTMS 0 0 0 20617 8636.99609375 0.5469758906657269 -3 0.0886077880859375 5 Carbamidomethyl (C) _NYIKYC(Carbamidomethyl (C))MF_ tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1 9.347437153973935 0.38822285293237185 1 VN{M(Oxidation (M))|F}Y 4 -1 23.175 0 0 2.0374 0 0 165.10503588445061 446.1322115533813 611.2372474378319 0 0 0 0 0 0 0 0 0.4247425010840047 VN{M(Oxidation (M))|F}Y 2.0374 - 49 + NaN NaN 141489.9 NaN 16759 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20623 83.811 NaN 336950 35 0 123110 0.261 -1 0 56 540.3302293595764 1078.6459057859527 2 540.3311157226562 MULTI HCD FTMS 0 0 0 20617 99599.9765625 0.405276073409003 2 -0.06246185302734375 6 NaN NaN 1 {M(Oxidation (M))|F}V 2 -1 4.9485 0 0 0.45877 0 0 479.40086291661515 350.0845125787719 829.4853754953871 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 0.45877 - 15 + NaN NaN 125926.8 NaN 16760 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20624 83.814 NaN 365900 35 0 51175 0.261 + 21020 PLPPGGHLPLL 11 80 555.8367455669943 1109.6589382007885 2 555.8369140625 MULTI HCD FTMS 0 0 0 20617 80657.5859375 1 0 0 7 Unmodified _PLPPGGHLPLL_ REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF 28.486842064014134 0.21109842150324093 1 {I|L}P{I|L}{I|L} 4 -1 32.964 0 0 2.9706 0 0 655.3446326994621 0 655.3446326994621 0 17.557809497117844 0 0 0 0.8807196863200843 0 0 0 {I|L}P{I|L}{I|L} 2.9706 + + 372 NaN NaN 136939.9 NaN 16761 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20625 83.818 NaN 94084 35 0 6698.1 0.261 -1 QEAQPNHQCC 10 44 636.2479181370968 1270.4812833409935 2 636.250244140625 MULTI HCD FTMS 0 0 0 20617 28359.3359375 0.08584150901918823 9 -0.2727508544921875 8 2 Carbamidomethyl (C) _QEAQPNHQC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A 3.2813086475875832 0.45793521633868084 1 EY{M(Oxidation (M))|F} 3 -1 35.445 0 0 2.7899 0 0 813.2992897435813 0 813.2992897435813 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 EY{M(Oxidation (M))|F} 2.7899 - 13 NaN NaN 100355.9 NaN 16762 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20626 83.821 NaN 93996 35 0 15804 0.264 + 7318 FTTPAVEVL 9 38 488.7709107723981 975.5272686115962 2 488.7713317871094 MULTI HCD FTMS 0 0 0 20617 18648.69140625 0.393479002650631 1 -0.03624725341796875 9 Unmodified _FTTPAVEVL_ REV__ENSG00000157766|ENST00000560601|ACAN;REV__nc|ENSG00000157766|P16112-2|ACAN;REV__nc|ENSG00000157766|P16112-3|ACAN;REV__nc|ENSG00000157766|P16112|ACAN 10.073929032068715 0.27331982688540024 1 VEV{I|L} 4 -1 32.18 0 0 3.2988 0 0 517.2530384748062 0 517.2530384748062 0 29.081531501239297 0 0 0 0.3252574989159953 0 0 0 VEV{I|L} 3.2988 + + 8 NaN NaN 96233.7 NaN 16763 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20627 83.824 NaN 188920 35 0 13104 0.261 + 6164 FPEILCIHL 9 69 542.796300692669 1083.5780484521379 2 542.796142578125 MULTI HCD FTMS 0 0 0 20617 71450.015625 0.9770358800152854 -2 0.05910491943359375 10 Unmodified _FPEILCIHL_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 60.38955033654506 0.017036522530421875 1 {M(Oxidation (M))|F}PE{I|L}{I|L}C{I|L}H{I|L} 9 0 + 66.036 0 0 6.0942 6.0942 93.344 0 0 0 45.0667531214534 9.137342758552691 9.137342758552691 66.03585325153396 0 1.4604093769761874 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}PE{I|L}{I|L}C{I|L}H{I|L} 6.0942 + + 141 + NaN NaN 113331.1 NaN 16764 3861 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20629 83.829 NaN 1508500 35 0 169910 0.327 + 21580 PYNDYFEYF 9 87 629.2585969444475 1256.502640955695 2 629.2589111328125 MULTI HCD FTMS 0 0 0 20628 291888 0.048934913553985944 10 -0.28890228271484375 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 89.40071534611396 0.0045416704840156395 1 Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 5 4 57.73 0 0 4.5945 0 0 489.1851063459 0 489.1851063459 0 7.429183601074044 0 0 0 1.805462187404089 0 0.5941876774005248 0 + Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4.5945 + + 1838 NaN NaN 315195.6 NaN 16765 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20630 83.834 NaN 230740 35 0 88158 0.262 + 33327 YFVKCFLL 8 32 516.7826351366648 NaN 0 516.76611328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YFVKCFLL_ REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|86 2.8892196856762586 0.38822285293237185 1 {I|L}{M(Oxidation (M))|F}D 3 -1 16.95 0 0 1.6432 0 0 131.1280608059381 522.2188814752561 653.3469422811943 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}D 1.6432 - 7 + NaN NaN 114995.5 NaN 16766 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20631 83.837 NaN 332230 35 0 35229 0.261 + 17895 MILELDPTF 9 52 547.7753373336277 1093.5361217340553 2 547.7755737304688 MULTI HCD FTMS 0 0 0 20628 93137.140625 0.018281849971361352 47 -0.8168563842773438 3 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 139.54400939418784 2.61670173137287E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 79.509 0 0 7.2708 7.2708 95.774 0 0 0 8.172626582051578 51.75657273439738 8.172626582051578 79.50856436322353 0 2.504432191740108 2 0.6382104921644451 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 7.2708 + + 261 NaN NaN 130463.4 NaN 16767 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20632 83.84 NaN 285430 35 0 47516 0.261 + 4114 ESYAYNED 8 46 495.68754531447377 989.3605376957476 2 495.6877136230469 MULTI HCD FTMS 0 0 0 20628 77975.7421875 0.5568592096030965 1 -0.026214599609375 4 Unmodified _ESYAYNED_ ENSG00000183185|ENST00000472788|GABRR3 0.6903765706972694 0.5409681170271811 1 AV{I|L}V 4 7 10.266 0 0 1.0376 0 0 130.91114912328504 473.18186365299067 604.0930127762757 0 0 0 0 0 0 0 0 0 AV{I|L}V 1.0376 - 25 + NaN NaN 119826.7 NaN 16768 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20633 83.844 NaN 404170 35 0 33713 0.261 + 19775 NYAWVYYHL 9 70 614.7942781955768 1227.5740034579535 2 614.7952880859375 MULTI HCD FTMS 0 0 0 20628 48789.41015625 0.28840049468760376 24 -0.5148391723632812 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.04802738721622131 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 54.029 0 0 4.4013 4.4013 81.478 0 0 0 20.290456128171996 26.635774114168154 20.290456128171996 2.280156171532184 0 1.6861818737241734 1.3979400086720375 0 0.28872548999643577 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[Y{I|L}]H;[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]NC{I|L};[YN]AWV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[WD];[YN]A{[DA]|[EG]}[RP]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVY{[WN]|[YH]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVY[Y{I|L}]H 4.4013;4.2155;4.1561;4.0398;3.5458;3.2948;3.0778;2.25;2.0642;2.0047 +;-;-;-;-;-;-;-;-;- + 684 NaN NaN 141032.5 NaN 16769 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20634 83.847 NaN 161640 35 0 5928.1 0.261 -1 0 82 575.8431002620255 1149.6716475908509 2 575.8433227539062 MULTI HCD FTMS 0 0 0 20628 75175.0078125 0.4442092384838868 3 -0.088592529296875 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.1102 0 0 984.5921778416306 0 984.5921778416306 0 7.279659778248622 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1102 - 61 + NaN NaN 135046.9 NaN 16770 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20635 83.85 NaN 217480 35 0 24832 0.262 + 12271 KLPALFFL 8 50 474.7995276574421 947.5845023816843 2 474.7994079589844 MULTI HCD FTMS 0 0 0 20628 33204.3125 0.028538524206302863 13 -0.3740081787109375 7 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 46.92087301778293 0.1468278106890452 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 44.531 0 0 4.6994 4.6994 90.306 0 0 0 2.235834254131106 32.32447808893326 2.235834254131106 44.53070327321406 0 2.1677353201839438 0 0 0 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4.6994 + + 38 NaN NaN 124388 NaN 16771 3862 20628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20637 83.855 NaN 562670 35 0 111680 0.326 -1 0 71 414.7614696637178 827.5083863942356 2 414.76171875 MULTI HCD FTMS 0 0 0 20636 447807.15625 0.19315920077452237 8 -0.23986053466796875 1 NaN NaN 1 P 1 -1 8.8515 0 0 1.0697 0 0 607.3772809028278 120.05050073795155 727.4277816407794 0 0 0 0 0 0.4247425010840047 0 0 0 P 1.0697 - 12 + NaN NaN 164029.7 NaN 16772 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20638 83.86 NaN 369340 35 0 48904 0.261 + 13462 KYPENFFLL 9 57 585.8132425088911 1169.6119320845821 2 585.8137817382812 MULTI HCD FTMS 0 0 0 20636 237919.359375 0.001200044383275799 296 -6.9916229248046875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 62.202 0 0 5.3181 5.3181 86.803 0 0 0 2.3367404008160264 42.02439355929528 2.3367404008160264 9.208187539523749 0 2.110924374808178 0 0 0.6989700043360187 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.3181;4.5309;2.7885 +;-;- + 249 NaN NaN 143710.8 NaN 16773 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20639 83.863 NaN 290820 35 0 24242 0.261 + 34998 YSVRWHNF 8 70 554.7688382233586 1107.523123513517 2 555.2507934570312 MULTI HCD FTMS 0 0 0 20636 31549.24609375 0.5819825797371865 -3 0.08868408203125 3 Unmodified _YSVRWHNF_ REV__ENSG00000162630|ENST00000367434|B3GALT2 13.50788311687929 0.4944073034352369 1 G{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8933 0 0 885.4229323287499 0 885.4229323287499 0 4.340612801023411 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.8933 - 312 + NaN NaN 134901.1 NaN 16774 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20640 83.867 NaN 252970 35 0 22554 0.261 + 5303 FFIDQANYF 9 66 582.7714842382808 1163.5284155433615 2 583.2735595703125 MULTI HCD FTMS 0 0 0 20636 65906.34375 0.7544855875212769 -2 0.06246185302734375 4 Unmodified _FFIDQANYF_ ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2 92.65332237495696 0.004456439685314431 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F} 9 0 + 82.317 0 0 7.0748 7.0748 89.917 0 0 0 5.6424927368725974 75.32760017977509 5.6424927368725974 9.208187539523749 0 2.774227503252014 0 0 0.7742275032520141 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]ANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQAGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]AGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DV]AAANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DG][{I|L}A]ANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DV]{[NV]|[RG]}NY{M(Oxidation (M))|F} 7.0748;6.2834;6.2834;4.8303;3.9451;3.7258;2.954 +;-;-;-;-;-;- + 266 NaN NaN 130762.7 NaN 16775 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20641 83.87 NaN 54736 35 0 6151.4 0.262 + 2388 DPGSELHTL 9 36 484.736572265625 NaN 0 484.736572265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _DPGSELHTL_ OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant 1.844237919475145 0.28630992268396543 1 G 1 8 3.0989 0 0 0.32032 0 0 501.3110773419938 406.10813318424067 907.4192105262345 0 0 0 0 0 0 0 0 0 + G 0.32032 + + 1 + NaN NaN 85133.9 NaN 16776 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20642 83.873 NaN 152160 35 0 5898.9 0.261 + 21354 PTIFCLVIL 9 75 509.80360959509403 1017.5926662569881 2 509.8037109375 MULTI HCD FTMS 0 0 0 20636 104160.75 0.8874949692818325 -1 0.026214599609375 6 Unmodified _PTIFCLVIL_ HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|6|3|sense 5.230669730166228 0.3113646817964458 1 D 1 9 7.232 0 0 0.71069 0 0 105.07808386645202 794.4425142877561 899.5205981542082 0 0 0 0 0 0.3252574989159953 0 0 0 D 0.71069 - 87 + NaN NaN 122467.2 NaN 16777 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20643 83.877 NaN 188930 35 0 24078 0.261 -1 FPLMTIEEF 9 67 571.7759035011909 1141.5372540691817 2 572.2764282226562 MULTI HCD FTMS 0 0 0 20636 28262.97265625 0.7332890237634899 -1 0.026214599609375 7 Oxidation (M) _FPLM(Oxidation (M))TIEEF_ ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF;nc|ENSG00000064726|Q9H0C5-2|BTBD1 32.30548876998284 0.10066689432505688 1 EE{M(Oxidation (M))|F} 3 -1 41.95 0 0 3.6749 0 0 718.3735100279692 0 718.3735100279692 0 10.268024924119672 0 0 0 1.4247425010840047 0 0.8494850021680094 0 EE{M(Oxidation (M))|F} 3.6749 + + 84 + NaN NaN 115128.6 NaN 16778 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20644 83.88 NaN 133290 35 0 26343 0.261 + 20075 NYIPRFWTF 9 44 622.3169883832127 1242.6194238332253 2 622.3170776367188 MULTI HCD FTMS 0 0 0 20636 40081.41796875 0.6128477819540116 10 -0.292205810546875 8 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 17.11289562659939 0.2125047172822487 1 [YN]{I|L}H 4 6 43.188 0 0 3.4755 0 0 0 712.3658541315061 712.3658541315061 25.228787452803374 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}H 3.4755 - 38 + NaN NaN 110198.1 NaN 16779 3863 20636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20646 83.885 NaN 504110 35 0 71738 0.327 -1 0 60 406.2482467771253 810.4819406210506 2 406.2484436035156 MULTI HCD FTMS 0 0 0 20645 453429.65625 0.1255795279568233 8 -0.23317718505859375 1 NaN NaN 1 P 1 -1 9.6041 0 0 1.185 0 0 590.3509724587444 120.05062280826405 710.4015952670085 0 0 0 0 0 0.5 0 0 0 P 1.185 - 2 + NaN NaN 167863 NaN 16780 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20647 83.889 NaN 530460 35 0 188790 0.261 + 21056 PLVGEYLLF 9 59 525.7969717794742 1049.5793906257484 2 525.7805786132812 MULTI HCD FTMS 0 0 0 20645 30098.498046875 0.08358157433299755 15 -0.39641571044921875 2 Unmodified _PLVGEYLLF_ ENSG00000147434|ENST00000276410|CHRNA6;nc|ENSG00000147434|Q15825-2|CHRNA6 8.593279151180031 0.2858735984551981 1 {I|L}{M(Oxidation (M))|F} 2 7 22.391 0 0 2.1333 0 0 771.417630227114 0 771.417630227114 0 11.42159058960253 0 0 0 0.3807196863200844 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.1333 + + 245 + NaN NaN 172193.8 NaN 16781 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20648 83.893 NaN 255950 35 0 11340 0.261 + 3591 EKIQKNKN 8 67 501.2904505043186 1000.5663480754372 2 501.29058837890625 MULTI HCD FTMS 0 0 0 20645 180335.6875 1 0 0 3 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 4.3292370932331545 0.5355693454741696 1 Q 1 7 10.401 0 0 1.0395 0 0 414.24812405375593 455.25007044010005 869.498194493856 0 0 0 0 0 0.7302046884880937 0 0 0 + Q 1.0395 + + 94 + NaN NaN 134316.4 NaN 16782 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20649 83.896 NaN 487280 35 0 55748 0.261 -1 SIFRCMVF 8 78 538.2585857360394 1074.5026185388788 2 538.773681640625 MULTI HCD FTMS 0 0 0 20645 10581.27734375 1 0 0 4 Carbamidomethyl (C),Oxidation (M) _SIFRC(Carbamidomethyl (C))M(Oxidation (M))VF_ ENST00000357992.8_1_1:205583594-205583885:-|nuORF 18.13498045792455 0.4603629008820478 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}W 6 -1 41.146 0 0 3.8293 0 0 203.0586541457996 0 203.0586541457996 0 14.331436695420976 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}W 3.8293 - 450 + NaN NaN 162296.6 NaN 16783 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20650 83.899 NaN 570270 35 0 73953 0.261 + 16366 LSCYLLSEPM 10 81 578.2738231613598 NaN 0 578.2874755859375 PEAK HCD FTMS 0 0 0 20645 25826.90234375 0.8513519586335644 -3 0.09197235107421875 5 Unmodified _LSCYLLSEPM_ REV__ENSG00000151576|ENST00000281273|QTRT2;REV__ENST00000466870.1_1_3:113784185-113787033:+|nuORF;REV__nc|ENSG00000151576|Q9H974-4|QTRT2 19.256988751693697 0.2866536677172102 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TE 6 -1 36.389 0 0 3.1518 0 0 228.0835902316972 171.0881289117797 399.17171914347693 0 0 0 0 0 0 0 0.6747425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TE 3.1518 - 653 + NaN NaN 166713 NaN 16784 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20651 83.903 NaN 190020 35 0 20514 0.261 + 33864 YLLLMLDIL 9 68 553.8301034429838 1105.6456539527676 2 553.8298950195312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YLLLMLDIL_ REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF 5.230669730166228 0.3113646817964458 1 [Y{I|L}]{I|L} 3 -1 19.666 0 0 1.7787 0 0 0 713.3908856145105 713.3908856145105 5.061668675368626 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]{I|L} 1.7787 + + 133 NaN NaN 110401.8 NaN 16785 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20652 83.906 NaN 103080 35 0 24103 0.263 -1 0 41 423.2747597817346 844.5349666302692 2 423.275146484375 MULTI HCD FTMS 0 0 0 20645 61837.390625 0.09759494710983703 9 -0.2626953125 7 NaN NaN 1 K 1 -1 0.088644 0 0 0.010496 0 0 422.51230535272856 290.90915857486567 713.4214639275942 0 0 0 0 0 0 0 0 0 K 0.010496 - 4 + NaN NaN 112515.6 NaN 16786 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20653 83.909 NaN 121950 35 0 16130 0.261 + 3300 EEFQILANSW 10 49 618.7982141045118 1235.5818752758234 2 618.798095703125 MULTI HCD FTMS 0 0 0 20645 98440.484375 1 0 0 8 Unmodified _EEFQILANSW_ ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1 23.96415052054722 0.2869594383653431 1 A{I|L}G{I|L}ANSW 8 5 49.105 0 0 3.9743 0 0 405.16584975410314 0 405.16584975410314 0 39.64123782136497 0 0 0 0 0 0 0 A{I|L}G{I|L}ANSW 3.9743 - 157 NaN NaN 123900.5 NaN 16787 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20654 83.913 NaN 126990 35 0 23234 0.261 + 20076 NYIPRFWTF 9 51 622.3169883832127 1242.6194238332253 2 622.3182373046875 MULTI HCD FTMS 0 0 0 20645 24082.93359375 0.3682297978425469 11 -0.3182830810546875 9 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4066366044617 849.4066366044617 16.478174818886373 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 24 NaN NaN 102002.5 NaN 16788 3864 20645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20656 83.918 NaN 723500 35 0 25806 0.327 + 23887 RSSKQLVDI 9 96 523.3036148573681 1044.592676781536 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20655 609542.8125 0.30875691773333125 36 -0.5776290893554688 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 1 Q 1 8 10.727 0 0 1.0269 0 0 502.29934533404975 411.22327700752 913.5226223415698 0 0 0 0 0 0.6747425010840047 0 0 0 + Q 1.0269 + + 93 + NaN NaN 188975.5 NaN 16789 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20657 83.922 NaN 1429900 35 0 232210 0.261 + 5104 FEIPYQNFSI 10 88 629.3129116015706 NaN 0 629.3294677734375 PEAK HCD FTMS 0 0 0 20655 15338.8203125 0.5308709839303135 2 -0.06253814697265625 2 Unmodified _FEIPYQNFSI_ REV__ENSG00000112053|ENST00000490799|SLC26A8;REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF;REV__nc|ENSG00000112053|Q96RN1-4|SLC26A8;REV__SLC26A8|p.S369Kfs*27|1|0.07|ENSG00000112053|chr6:35977272-35977273|-/TTTTT|frameshift_variant 15.248480904072842 0.31912431859025153 1 {I|L}YPQS{I|L} 6 -1 28.932 0 0 2.3024 0 0 276.1172736490158 276.0987642877563 552.2160379367721 0 0 0 0 0 0 0 1.055462187404089 0.6861818737241735 {I|L}YPQS{I|L} 2.3024 - 544 + NaN NaN 305695 NaN 16790 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20658 83.926 NaN 319750 35 0 118370 0.261 -1 ECYDFEEDR 9 39 631.7353534498966 1261.456153966593 2 631.7362060546875 MULTI HCD FTMS 0 0 0 20655 237813.640625 0.5445142952204968 2 -0.06253814697265625 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))YDFEEDR_ ENSG00000146021|ENST00000309755|KLHL3;nc|ENSG00000146021|Q9UH77-2|KLHL3;nc|ENSG00000146021|Q9UH77-3|KLHL3 0.45834013312273997 0.3475424938045562 1 E 1 -1 6.9897 0 0 0.5541 0 0 151.01806880290184 978.3593384856622 1129.377407288564 0 0 0 0 0 0 0 0 0 E 0.5541 + + 4 + NaN NaN 143740.4 NaN 16791 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20659 83.929 NaN 278540 35 0 49007 0.263 + 26111 SPIVLIDEI 9 43 499.79194152482904 997.5693301164581 2 499.79241943359375 MULTI HCD FTMS 0 0 0 20655 122313.1640625 0.6354546455232756 1 -0.02960968017578125 4 Unmodified _SPIVLIDEI_ tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1 36.12702656103203 0.08312389501731911 1 {I|L}{I|L}DE{I|L} 5 4 48.628 0 0 4.8746 0 0 396.2364979474625 0 396.2364979474625 0 32.42992819099939 0 0 0 1.305462187404089 0 0 0 + {I|L}{I|L}DE{I|L} 4.8746 + + 31 NaN NaN 120636.8 NaN 16792 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20660 83.932 NaN 534210 35 0 34884 0.261 + 19776 NYAWVYYHL 9 88 614.7942781955768 1227.5740034579535 2 614.794921875 MULTI HCD FTMS 0 0 0 20655 131880.421875 0.7795621793039369 27 -0.4894866943359375 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.04802738721622131 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 42.435 0 0 3.4568 3.4568 81.149 0 0 0 15.391770473300454 0.06650492481162473 0.06650492481162473 3.8293798706113904 0 1.5629529932484498 1.3979400086720375 0 0.3494850021680094 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[Y{I|L}]Y{[HG]|PP}Y{[WN]|[YH]}{I|L};[Y{I|L}]EE[RP]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]YW[NG]{[WN]|[YH]}{I|L};[Y{I|L}]YW{I|L}[DP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.4568;3.1449;2.8107;2.4497;2.0925;2.0694;1.9863;1.7805;1.6643;1.612 +;-;-;-;-;-;-;-;-;- + 936 NaN NaN 173901.2 NaN 16793 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20661 83.936 NaN 346630 35 0 69675 0.261 + 6428 FPIAKISPTF 10 60 560.8255281236458 NaN 0 560.813232421875 PEAK HCD FTMS 0 0 0 20655 16431.921875 0.457566430024807 -8 0.24627685546875 6 Unmodified _FPIAKISPTF_ REV__ENSG00000255582|ENST00000542433|OR10G2 14.838274106304384 0.3224471714378502 1 {M(Oxidation (M))|F}P{I|L} 3 -1 13.812 0 0 1.2336 0 0 131.11833801861366 628.2884615533811 759.4067995719947 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P{I|L} 1.2336 + + 129 + NaN NaN 133196.6 NaN 16794 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20662 83.939 NaN 454810 35 0 47014 0.261 + 29202 TYLDIFRDF 9 78 595.2981805865971 1188.5818082399942 2 595.29833984375 MULTI HCD FTMS 0 0 0 20655 117981 0.7109733796833568 -1 0.032867431640625 7 Unmodified _TYLDIFRDF_ ENSG00000072818|ENST00000158762|ACAP1 59.368380827593164 0.01846506874148156 1 [YT]{I|L}D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 9 0 + 89.377 0 0 7.5196 7.5196 95.824 0 0 0 25.253312076568903 69.92660950345218 25.253312076568903 60.451622307642765 0 1.8494850021680094 2 0.7059771852360797 0 + + [YT]{I|L}D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT][TA]{M(Oxidation (M))|F}{I|L}QQA{M(Oxidation (M))|F};[YT][YR]{[{M(Oxidation (M))|F}H]|[RQ]}R{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]D[Y{I|L}][{I|L}T]D{M(Oxidation (M))|F};{[CP]|[EA]}[HV]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}R{M(Oxidation (M))|F} 7.5196;2.4336;1.8615;0.9944;0.28062 +;-;-;-;- + 681 NaN NaN 156737.1 NaN 16795 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20663 83.942 NaN 109280 35 0 26103 0.264 + -1 YIMLGMVPICF 11 53 434.8822830602109 NaN 0 434.8824157714844 PEAK HCD FTMS 0 0 0 20655 49331.12890625 0.5084602668617713 1 -0.02960968017578125 8 Oxidation (M) _YIM(Oxidation (M))LGMVPICF_ REV__ENSG00000165240|ENST00000341514|ATP7A;REV__nc|ENSG00000165240|Q04656-2|ATP7A;REV__nc|ENSG00000165240|Q04656-3|ATP7A;REV__nc|ENSG00000165240|Q04656-5|ATP7A 1.4551175022131473 0.3379923941668102 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112934.4 NaN 16796 3865 20655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20665 83.947 NaN 874400 35 0 166950 0.327 + 24371 RYILEPFFI 9 80 599.3368687292173 1196.6591845252344 2 599.3372192382812 MULTI HCD FTMS 0 0 0 20664 431513.9375 0.2555812378927667 5 -0.1478729248046875 1 Unmodified _RYILEPFFI_ ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant 36.506200033944 0.08138327636155518 1 [Y{I|L}]R{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 2 + 72.59 0 0 6.0661 6.0661 91.071 0 0 0 15.14064001128478 42.163128534713714 15.14064001128478 19.96539467890493 0 1.8494850021680094 1.2218487496163564 0.3494850021680094 0 [Y{I|L}]R{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 6.0661;4.3976 -;- 641 NaN NaN 211157.5 NaN 16797 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20666 83.952 NaN 560620 35 0 33892 0.261 + -1 LMLLIYAPL 9 103 531.8170281056758 1061.6195032781516 2 531.8170776367188 MULTI HCD FTMS 0 0 0 20664 332848.25 0.3245331824979802 43 -0.6986541748046875 2 Oxidation (M) _LM(Oxidation (M))LLIYAPL_ REV__nc|ENSG00000231004|P0C854|CECR9 5.230669730166228 0.3113646817964458 1 AVY{M(Oxidation (M))|F} 4 -1 25.662 0 0 2.4172 0 0 563.3730871177985 0 563.3730871177985 0 11.849556425358967 0 0 0 0 0 0 0 AVY{M(Oxidation (M))|F} 2.4172 - 574 + NaN NaN 171425.2 NaN 16798 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20667 83.955 NaN 1115600 35 0 74116 0.261 + 26134 SPMDIFDMF 9 113 567.7281169239906 1133.441680914781 2 567.7280883789062 MULTI HCD FTMS 0 0 0 20664 279504.5625 0.4596464357015291 -14 0.410430908203125 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 54.773552608820026 0.024892918755467567 1 {M(Oxidation (M))|F}D[YT]YN{M(Oxidation (M))|F} 7 6 43.02 0 0 3.7955 0 0 165.08107236646373 0 165.08107236646373 0 27.284496027691617 0 0 0 0.3252574989159953 0 0.5994850021680094 0.3807196863200844 {M(Oxidation (M))|F}D[YT]YN{M(Oxidation (M))|F} 3.7955 - 885 + NaN NaN 244323.1 NaN 16799 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20668 83.959 NaN 260200 35 0 9948.3 0.261 -1 IAVSMIHRF 9 93 545.2977687522243 NaN 0 545.3167724609375 PEAK HCD FTMS 0 0 0 20664 5473.79052734375 0.5132963270012737 -1 0.02960968017578125 4 Oxidation (M) _IAVSM(Oxidation (M))IHRF_ ENSG00000167359|ENST00000380211|OR51I1 7.910154910731844 0.25691533546754686 1 VW{I|L} 3 -1 14.693 0 0 1.3497 0 0 65.08528565242439 622.2367647760374 687.3220504284618 0 0 0 0 0 0 0 0 0 VW{I|L} 1.3497 - 81 + NaN NaN 126686.7 NaN 16800 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20669 83.962 NaN 100320 35 0 11847 0.261 + 14348 LDWPVPAFDII 11 51 643.3432991130906 1284.672045292981 2 643.3448486328125 MULTI HCD FTMS 0 0 0 20664 20046.244140625 0.27959413444041276 1 -0.032928466796875 5 Unmodified _LDWPVPAFDII_ ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 29.081581746732265 0.20726811077697932 1 D{I|L}{I|L} 3 8 39.737 0 0 3.0932 0 0 925.4691029279312 0 925.4691029279312 0 21.320684442917607 0 0 0 0.8807196863200843 0 0.9247425010840047 0 + D{I|L}{I|L} 3.0932 + + 50 NaN NaN 97879.1 NaN 16801 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20670 83.965 NaN 244610 35 0 17085 0.264 + 29786 VEFSSLVVL 9 61 496.7866820769819 991.5588112207638 2 496.7872619628906 MULTI HCD FTMS 0 0 0 20664 54263.15234375 0.11492604785695017 23 -0.4274444580078125 6 Unmodified _VEFSSLVVL_ REV__ENST00000569558.5_1_16:90095949-90097840:+|nuORF 36.04419817259434 0.08350412372117409 1 DVV{I|L} 4 -1 44.967 0 0 4.535 0 0 547.3016792882432 0 547.3016792882432 0 28.769184659718547 0 0 0 1.3807196863200843 0 0.6747425010840047 0 DVV{I|L} 4.535 - 153 NaN NaN 114162.2 NaN 16802 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20671 83.969 NaN 151140 35 0 14932 0.261 + 4077 ESHLLEPHEI 10 50 602.3049533418007 1202.5953537504013 2 603.3073120117188 MULTI HCD FTMS 0 0 0 20664 65199.98046875 0.23669523426073785 17 -0.36954498291015625 7 Unmodified _ESHLLEPHEI_ nc|ENSG00000141956|P57071|PRDM15 10.073929032068715 0.4168838835836452 1 MYR 3 10 10.788 0 0 0.8971 0 0 129.09344175321468 620.2727755182249 749.3662172714396 0 0 0 0 0 0.3252574989159953 0 0 0 MYR 0.8971 - 33 + NaN NaN 98291.2 NaN 16803 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20672 83.972 NaN 69073 35 0 6040 0.261 -1 LTASCFCCFY 10 42 636.2479181370968 1270.4812833409935 2 636.3027954101562 MULTI HCD FTMS 0 0 0 20664 21748.970703125 0.0658324464608372 14 -0.34075164794921875 8 2 Carbamidomethyl (C) _LTASC(Carbamidomethyl (C))FC(Carbamidomethyl (C))CFY_ ENST00000517956.5_1_8:124511968-124512073:-|nuORF 1.6526216038709556 0.46655611578153744 1 EY{M(Oxidation (M))|F} 3 -1 30.234 0 0 2.3797 0 0 813.2979603498062 0 813.2979603498062 0 24.749321833847873 0 0 0 0.8807196863200843 0 0 0 EY{M(Oxidation (M))|F} 2.3797 - 11 NaN NaN 105745.8 NaN 16804 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20673 83.975 NaN 67753 35 0 5628.5 0.264 + 5053 FDREIWSNEL 10 42 436.87974087811915 1307.6173932345575 3 437.2150573730469 MULTI HCD FTMS 0 0 0 20664 30975.16015625 0.8091008064845274 -8 0.2430572509765625 9 Unmodified _FDREIWSNEL_ ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 1.4551175022131473 0.4676015363898197 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105901.4 NaN 16805 3866 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20675 83.98 NaN 319210 35 0 33682 0.327 + 17896 MILELDPTF 9 52 547.7753373336277 1093.5361217340553 2 547.775634765625 MULTI HCD FTMS 0 0 0 20674 108202.4140625 0.021239006127473592 52 -0.8460617065429688 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 104.79918948944588 0.003791450360204016 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[TP]{M(Oxidation (M))|F} 9 0 + 74.869 0 0 6.8465 6.8465 94.893 0 0 0 17.314309196763702 39.406592950506365 17.314309196763702 74.86880000633434 0 2.274227503252014 2 0.3252574989159953 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[TP]{M(Oxidation (M))|F} 6.8465 + + 270 NaN NaN 134489 NaN 16806 3867 20674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20676 83.985 NaN 300660 35 0 25460 0.261 -1 NSKMALQTI 9 57 511.27111358049126 1020.5276742277825 2 511.2815246582031 MULTI HCD FTMS 0 0 0 20674 15153.482421875 0.6681690297559179 1 -0.02294158935546875 2 Oxidation (M) _NSKM(Oxidation (M))ALQTI_ tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1 14.838274106304384 0.23215694253501695 1 [{I|L}T]{M(Oxidation (M))|F}[VS]QT{I|L} 8 -1 40.155 0 0 3.9348 0 0 0 128.05352945163898 128.05352945163898 15.592634077523186 0 0 0 0 0 1.6989700043360187 0.4247425010840047 0.3054621874040891 [{I|L}T]{M(Oxidation (M))|F}[VS]QT{I|L} 3.9348 - 488 NaN NaN 151992.1 NaN 16807 3867 20674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20677 83.988 NaN 123810 35 0 38499 0.261 + 21608 PYPDVTDII 9 32 516.7659187431916 1031.5172845531831 2 516.7659301757812 MULTI HCD FTMS 0 0 0 20674 57107.52734375 0.2861733215665705 9 -0.24900054931640625 3 Unmodified _PYPDVTDII_ REV__ENSG00000109756|ENST00000691494|RAPGEF2 12.531546534597751 0.2520865569484384 1 {I|L}{I|L} 2 -1 25.217 0 0 2.4446 0 0 787.3379287946415 0 787.3379287946415 0 15.919693766594703 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.4446 + + 12 NaN NaN 116127.3 NaN 16808 3867 20674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20678 83.992 NaN 92282 35 0 6033 0.261 + 33899 YLNVFSLNYF 10 45 640.3200362692243 1278.6255196052484 2 640.3206787109375 MULTI HCD FTMS 0 0 0 20674 22256.23828125 0.33581558565653646 3 -0.0853729248046875 4 Unmodified _YLNVFSLNYF_ ENSG00000092020|ENST00000261475|PPP2R3C;nc|ENSG00000092020|Q969Q6-2|PPP2R3C 6.723162845929126 0.4397169348982109 1 [Y{I|L}]{I|L}Y 4 6 40.688 0 0 3.1821 0 0 0 723.3091912054936 723.3091912054936 33.697887582883936 0 0 0 0 0.75 2 0 0 [Y{I|L}]{I|L}Y 3.1821 - 15 + NaN NaN 100818.8 NaN 16809 3867 20674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20679 83.995 NaN 119580 35 0 9369.3 0.263 + -1 VFFLCVLI 8 48 505.79205812050105 1009.5695633078021 2 505.79217529296875 MULTI HCD FTMS 0 0 0 20674 27487.673828125 0.62912276962467 1 -0.02294158935546875 5 Carbamidomethyl (C) _VFFLC(Carbamidomethyl (C))VLI_ REV__ENSG00000268089|ENST00000598523|GABRQ 6.354104778181461 0.5325651638111438 1 {I|L}{I|L} 2 -1 24.464 0 0 2.4232 0 0 765.3903065412125 0 765.3903065412125 0 7.474250108400469 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L} 2.4232 + + 6 NaN NaN 113149 NaN 16810 3867 20674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20680 83.998 NaN 63845 35 0 10192 0.261 + 33191 YFAAVAGQD 9 38 471.2209969049459 NaN 0 471.2209167480469 PEAK HCD FTMS 0 0 0 20674 17805.263671875 0.525324537025192 7 -0.18350982666015625 6 Unmodified _YFAAVAGQD_ ENSG00000075142|ENST00000265729|SRI;ENST00000486860.5_1_7:87838471-87849341:-|nuORF;ENST00000488015.5_1_7:87840172-87849341:-|nuORF;ENST00000489079.1_1_7:87840172-87856229:-|nuORF;nc|ENSG00000075142|P30626-2|SRI;nc|ENSG00000075142|P30626-3|SRI 2.302733041254933 0.2840881193086663 1 V 1 8 0.088644 0 0 0.0094259 0 0 389.1541387300105 449.18219934635005 838.3363380763606 0 0 0 0 0 0 0 0 0 + V 0.0094259 + + 1 + NaN NaN 90958.8 NaN 16811 3867 20674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20682 84.003 NaN 417670 35 0 48808 0.327 + 13463 KYPENFFLL 9 75 585.8132425088911 1169.6119320845821 2 585.8133544921875 MULTI HCD FTMS 0 0 0 20681 228416.796875 0.0011521142913958927 301 -7.1322479248046875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 40.23920728925047 0.06424668180817725 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 57.202 0 0 4.8907 4.8907 86.059 0 0 0 2.3367404008160264 35.77500619321228 2.3367404008160264 9.208187539523749 0 2.1861818737241734 0 0 0.4247425010840047 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 4.8907;4.1034;2.2018 +;-;- + 341 NaN NaN 148172.6 NaN 16812 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20683 84.008 NaN 199200 35 0 15833 0.261 + 5304 FFIDQANYF 9 73 582.7714842382808 1163.5284155433615 2 582.771728515625 MULTI HCD FTMS 0 0 0 20681 72460.0859375 0.5215052161255469 3 -0.09200286865234375 2 Unmodified _FFIDQANYF_ ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2 49.55428908609986 0.03219431099695407 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F} 9 0 + 62.445 0 0 5.3668 5.3668 86.876 0 0 0 5.6424927368725974 56.960179168349896 5.6424927368725974 9.208187539523749 0 1.8494850021680094 0 0 0.3807196863200844 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]ANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQAGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]AGGY{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[{M(Oxidation (M))|F}E]ANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DV]AAANY{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[{M(Oxidation (M))|F}E]AGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DV]{[NV]|[RG]}NY{M(Oxidation (M))|F} 5.3668;4.5754;4.5754;3.4606;3.3256;2.9185;2.5342;1.9274 +;-;-;-;-;-;-;- + 287 NaN NaN 113590.9 NaN 16813 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20684 84.011 NaN 361490 35 0 33944 0.262 + 3121 EANAVFDIL 9 55 496.2583211276739 990.5020893221479 2 496.25836181640625 MULTI HCD FTMS 0 0 0 20681 158313.859375 0.5483803488409476 -2 0.05587005615234375 3 Unmodified _EANAVFDIL_ ENSG00000184967|ENST00000330579|NOC4L 53.832793166522166 0.026208976789938845 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L}{I|L} 8 5 + 66.062 0 0 6.6695 6.6695 91.938 0 0 0 22.939455175668755 25.76097812279194 22.939455175668755 17.75698788007091 0 0.9247425010840047 1.5228787452803376 0.9361818737241735 0.3807196863200844 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}[NG]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{I|L}[NG]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{I|L}VAN 6.6695;4.8768;4.1196;3.5994 -;-;-;- 191 NaN NaN 137392.4 NaN 16814 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20685 84.015 NaN 336820 35 0 57183 0.261 + 18071 MMIANSRN 8 62 468.7229936992112 935.4314344652224 2 468.7229309082031 MULTI HCD FTMS 0 0 0 20681 178239.015625 0.20953454527981125 -6 0.174072265625 4 Unmodified _MMIANSRN_ ENSG00000124171|ENST00000371610|PARD6B 2.302733041254933 0.5385759549224092 1 {I|L}K 2 7 9.3804 0 0 1.0028 0 0 172.12058460279792 519.0968721979124 691.2174568007104 0 0 0 0 0 0 0 0 0.3807196863200844 {I|L}K 1.0028 - 27 + NaN NaN 143851.7 NaN 16815 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20686 84.018 NaN 107420 35 0 6479.3 0.261 -1 0 56 575.8431002620255 1149.6716475908509 2 575.8429565429688 MULTI HCD FTMS 0 0 0 20681 96464.1640625 0.5700068959894775 9 -0.25531768798828125 5 NaN NaN 1 {I|L} 1 -1 5.4846 0 0 0.47705 0 0 263.2308649754196 770.3322237604124 1033.563088735832 0 0 0 0 0 0 0 0 0 {I|L} 0.47705 - 24 + NaN NaN 100749.9 NaN 16816 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20687 84.021 NaN 128870 35 0 19572 0.261 + 6233 FPETLPESSLF 11 37 633.8160150923635 1265.617477251527 2 633.8155517578125 MULTI HCD FTMS 0 0 0 20681 66429.34375 0.6883579473372278 -4 0.11834716796875 6 Unmodified _FPETLPESSLF_ ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 20.41453444215458 0.279209903849948 1 {I|L}{M(Oxidation (M))|F} 2 9 20.969 0 0 1.6568 0 0 987.4568958966812 0 987.4568958966812 0 11.505149978319906 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.6568 + + 5 NaN NaN 97915.9 NaN 16817 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20688 84.024 NaN 295530 35 0 46491 0.261 + 26803 SYIDRLISVF 10 66 606.8343687306564 1211.6541845281126 2 606.835693359375 MULTI HCD FTMS 0 0 0 20681 98034.96875 0.5638526299348376 -2 0.05587005615234375 7 Unmodified _SYIDRLISVF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 46.0223103267499 0.09314584965737738 1 {I|L}SV{M(Oxidation (M))|F} 4 6 40.152 0 0 3.3138 0 0 747.3935414044937 0 747.3935414044937 0 14.465175419594658 0 0 0 1.1747425010840047 0 0.4247425010840047 0 + {I|L}SV{M(Oxidation (M))|F} 3.3138 + + 125 NaN NaN 129840.6 NaN 16818 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20689 84.028 NaN 190420 35 0 25932 0.261 + 20077 NYIPRFWTF 9 49 622.3169883832127 1242.6194238332253 2 622.316650390625 MULTI HCD FTMS 0 0 0 20681 31599.935546875 0.48316530180870804 15 -0.3136749267578125 8 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 36.695 0 0 2.953 0 0 0 849.406199635163 849.406199635163 21.121506059964545 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + [YN]{I|L} 2.953 + + 44 NaN NaN 115064.2 NaN 16819 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20690 84.031 NaN 73439 35 0 4749.1 0.261 + -1 YPCSDGMFMR 10 38 640.2493960237872 1278.4842391143743 2 640.2486572265625 MULTI HCD FTMS 0 0 0 20681 39955.7421875 0.0649134638611807 15 -0.3136749267578125 9 Carbamidomethyl (C),Oxidation (M) _YPC(Carbamidomethyl (C))SDGM(Oxidation (M))FMR_ REV__ENSG00000003402|ENST00000309955|CFLAR;REV__nc|ENSG00000003402|O15519-11|CFLAR;REV__nc|ENSG00000003402|O15519-14|CFLAR;REV__nc|ENSG00000003402|O15519-15|CFLAR;REV__nc|ENSG00000003402|O15519-3|CFLAR;REV__nc|ENSG00000003402|O15519-4|CFLAR;REV__nc|ENSG00000003402|O15519-5|CFLAR;REV__nc|ENSG00000003402|O15519-6|CFLAR;REV__nc|ENSG00000003402|O15519-7|CFLAR;REV__nc|ENSG00000003402|O15519-8|CFLAR 3.2813086475875832 0.45793521633868084 1 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6402 0 0 950.3387890079488 0 950.3387890079488 0 11.505149978319906 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.6402 - 5 NaN NaN 91751.7 NaN 16820 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20691 84.034 NaN 191450 35 0 17182 0.262 + -1 KSHFVCIMS 9 73 554.7688382233586 1107.523123513517 2 555.2698364257812 MULTI HCD FTMS 0 0 0 20681 32946.79296875 0.6077628450785275 2 -0.06243133544921875 10 Carbamidomethyl (C) _KSHFVC(Carbamidomethyl (C))IMS_ REV__ENSG00000169777|ENST00000382492|TAS2R1 13.90604991867851 0.24021115267848145 1 CK 2 -1 17.351 0 0 1.5667 0 0 236.08010693804528 637.2960909479124 873.3761978859577 0 0 0 0 0 0.3494850021680094 0 0 0.28872548999643577 CK 1.5667 - 525 + NaN NaN 98610 NaN 16821 3868 20681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20693 84.039 NaN 712210 35 0 82078 0.327 + 21581 PYNDYFEYF 9 75 629.2585969444475 1256.502640955695 2 629.2587280273438 MULTI HCD FTMS 0 0 0 20692 249590.796875 0.0418438033387758 17 -0.304595947265625 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 70.33199760932243 0.0089807860198535 1 Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 5 4 56.102 0 0 4.4649 0 0 489.18574721504064 0 489.18574721504064 0 15.009628401465989 0 0 0 1.8494850021680094 0 0.6549471895720984 0 + Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4.4649 + + 388 NaN NaN 191507.3 NaN 16822 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20694 84.044 NaN 698930 35 0 122860 0.262 -1 IPVTIMDVF 9 57 525.7805101044983 1049.5464672757964 2 525.780517578125 MULTI HCD FTMS 0 0 0 20692 219549.4375 0.40980130861904374 11 -0.24871063232421875 2 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 25.399314129420986 0.14091189997036632 1 EY{I|L}S{I|L}G{M(Oxidation (M))|F} 7 -1 51.446 0 0 4.9017 0 0 222.14355982935905 0 222.14355982935905 0 34.10087649901129 0 0 0 0.5 0 0.3494850021680094 0 EY{I|L}S{I|L}G{M(Oxidation (M))|F} 4.9017 - 200 + NaN NaN 190687.9 NaN 16823 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20695 84.047 NaN 1003000 35 0 186430 0.261 + 248 AFEDVAVYF 9 83 530.7528344730947 1059.4911160129893 2 531.2704467773438 MULTI HCD FTMS 0 0 0 20692 40286.57421875 0.3567896482682283 3 -0.0786590576171875 3 Unmodified _AFEDVAVYF_ ENSG00000083812|ENST00000196482|ZNF324;ENSG00000240747|ENST00000383748|KRBOX1;ENST00000418093.2_1_3:42980387-43074030:+|nuORF;ENST00000463888.1_1_3:42982705-42984136:+|nuORF;nc|ENSG00000240747|C9JBD0-2|KRBOX1 36.04419817259434 0.08350412372117409 1 {I|L}C{[QS]|[NT]}AVY{M(Oxidation (M))|F} 8 5 44.875 0 0 4.2355 0 0 130.05952409287482 0 130.05952409287482 0 18.746024581115783 0 0 0 1.8494850021680094 0 0.3807196863200844 0 {I|L}C{[QS]|[NT]}AVY{M(Oxidation (M))|F} 4.2355 - 719 + NaN NaN 258538.9 NaN 16824 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20696 84.051 NaN 550780 35 0 122010 0.261 + 15233 LPAADTWISL 10 58 543.7948864143822 1085.5752198955643 2 543.7951049804688 MULTI HCD FTMS 0 0 0 20692 315679 0.6499687585796481 -1 0.03617095947265625 4 Unmodified _LPAADTWISL_ ENST00000527156.1_3_1:90309067-90309214:+|nuORF 51.629811660486645 0.07186226796122157 1 TW{I|L}S{I|L} 5 5 65.701 0 0 6.0522 0 0 467.23561063619667 0 467.23561063619667 0 41.26410021363377 0 0 0 2 0 0.7742275032520141 0 + TW{I|L}S{I|L} 6.0522 + + 199 NaN NaN 184162.9 NaN 16825 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20697 84.054 NaN 134380 35 0 18181 0.264 -1 0 45 406.2482467771253 810.4819406210506 2 406.24859619140625 MULTI HCD FTMS 0 0 0 20692 145511.0625 0.04029998984268205 13 -0.26507568359375 5 NaN NaN 1 R 1 -1 11.783 0 0 1.4538 0 0 636.3705800026897 0 636.3705800026897 0 2.178642847807186 0 0 0 0 0 0 0 R 1.4538 - 8 + NaN NaN 119626.9 NaN 16826 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20698 84.057 NaN 170110 35 0 20687 0.261 + 12272 KLPALFFL 8 50 474.7995276574421 947.5845023816843 2 474.7994079589844 MULTI HCD FTMS 0 0 0 20692 50337.28125 0.04326401034301193 20 -0.3354034423828125 6 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 24.67388899826682 0.4122521268485776 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 5 33.188 0 0 3.5023 0 0 522.3527296857065 0 522.3527296857065 0 25.228787452803374 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.5023 + + 54 NaN NaN 117691.5 NaN 16827 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20699 84.061 NaN 89266 35 0 6241.3 0.261 -1 PYELGMEHCE 10 53 640.7508162026521 NaN 0 640.751708984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _PYELGM(Oxidation (M))EHC(Carbamidomethyl (C))E_ ENSG00000108443|ENST00000225577|RPS6KB1;ENST00000489824.1_1_17:57971183-58007752:+|nuORF;nc|ENSG00000108443|P23443-2|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;RPS6KB1-VMP1|1|fusion;RPS6KB1-VMP1|10|fusion;RPS6KB1-VMP1|11|fusion;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|4|fusion;RPS6KB1-VMP1|5|fusion;RPS6KB1-VMP1|6|fusion;RPS6KB1-VMP1|9|fusion;VMP1-RPS6KB1|1|fusion 1.844237919475145 0.33860587697544825 1 {I|L}T 2 -1 10.969 0 0 0.8573 0 0 786.2332475402667 276.09836755924067 1062.3316150995074 0 0 0 0 0 0 0 0 0 {I|L}T 0.8573 - 43 + NaN NaN 102448.5 NaN 16828 3869 20692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20701 84.066 NaN 1367700 35 0 188820 0.327 + 10761 ISDFFIADMP 10 92 578.2738231613598 NaN 0 578.2879028320312 PEAK HCD FTMS 0 0 0 20700 22677.7109375 0.7475427508494286 1 -0.029571533203125 1 Unmodified _ISDFFIADMP_ REV__ENSG00000129534|ENST00000310806|MIS18BP1;REV__nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 19.256988751693697 0.2866536677172102 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TE 6 -1 45.394 0 0 3.9318 0 0 228.08356543085534 171.08880029849846 399.1723657293538 0 0 0 0 0 0 0 1.274227503252014 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TE 3.9318 - 887 + NaN NaN 293894.8 NaN 16829 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20702 84.07 NaN 534450 35 0 18040 0.261 + 28188 TKPKSLSRE 9 88 523.3036148573681 1044.592676781536 2 523.3035888671875 MULTI HCD FTMS 0 0 0 20700 467843.9375 0.23698097846527438 41 -0.6156845092773438 2 Unmodified _TKPKSLSRE_ REV__ENSG00000140326|ENST00000356231|CDAN1;REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 5.731851221503515 0.3075653528928475 1 Q 1 -1 10.713 0 0 1.0256 0 0 502.30014856063605 411.2227470166 913.5228955772361 0 0 0 0 0 0.7614393726401688 0 0 0 Q 1.0256 - 125 + NaN NaN 159484.3 NaN 16830 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20703 84.074 NaN 361370 35 0 34086 0.261 + 455 ALPDQSFLW 9 70 538.7741480513134 1075.5337431694268 2 538.7738647460938 MULTI HCD FTMS 0 0 0 20700 193121.40625 0.7337144128531111 4 -0.09813690185546875 3 Unmodified _ALPDQSFLW_ ENSG00000249915|ENST00000264933|PDCD6;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507841.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;nc|ENSG00000249915|O75340-3|PDCD6 72.96794272382148 0.008127836904478181 1 [{I|L}A][DP]QS{M(Oxidation (M))|F}{I|L}W 9 0 + 57.642 0 0 5.3594 5.3594 83.519 0 0 0 1.6934746919729804 3.2711470149614996 1.6934746919729804 3.2711470149614996 0 2.1307196863200843 0 0.2742275032520141 0.25 + + [{I|L}A][DP]QS{M(Oxidation (M))|F}{I|L}W;[DP][{I|L}A]QS{M(Oxidation (M))|F}{I|L}W;[DP]Q[{I|L}A]S{M(Oxidation (M))|F}{I|L}W;[{I|L}A][DP][AG]S{M(Oxidation (M))|F}{I|L}W;[DP][{I|L}A]QYA{I|L}W;[DP]Q[{I|L}A]YA{I|L}W;[DP][{I|L}A][AG]S{M(Oxidation (M))|F}{I|L}W;[{I|L}A][DP]QSW{I|L}{M(Oxidation (M))|F};[DP][AG][{I|L}A]S{M(Oxidation (M))|F}{I|L}W;[DP][{I|L}A][AG]YA{I|L}W 5.3594;5.0552;4.7541;4.2708;4.2167;3.9155;3.5018;3.4262;3.2006;2.6632 +;-;-;-;-;-;-;-;-;- + 744 + NaN NaN 145467.5 NaN 16831 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20704 84.077 NaN 254590 35 0 13707 0.261 + 33865 YLLLMLDIL 9 81 553.8301034429838 1105.6456539527676 2 553.830078125 MULTI HCD FTMS 0 0 0 20700 204982.578125 0.09953008853043413 -29 0.8487625122070312 4 Unmodified _YLLLMLDIL_ REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF 4.75600775471527 0.31496297302216103 1 D 1 -1 6.9061 0 0 0.62463 0 0 61.05391609877672 926.5179537408811 987.5718698396579 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.62463 + + 57 + NaN NaN 125082.8 NaN 16832 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20705 84.08 NaN 146550 35 0 28009 0.261 + 27855 TDLRRDLI 8 55 501.2904505043186 1000.5663480754372 2 501.2906188964844 MULTI HCD FTMS 0 0 0 20700 110300.15625 0.6116379834690235 6 -0.16362762451171875 5 Unmodified _TDLRRDLI_ REV__ENSG00000101977|ENST00000519895|MCF2;REV__nc|ENSG00000101977|P10911-3|MCF2 2.577480529830294 0.5381683276125971 1 {I|L} 1 -1 3.9794 0 0 0.39771 0 0 131.13393519855168 753.3269137018186 884.4608489003704 0 0 0 0 0 0 0 0 0 {I|L} 0.39771 + + 38 + NaN NaN 121324.4 NaN 16833 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20706 84.084 NaN 282080 35 0 27572 0.261 + 20645 PFHPPLQLFF 10 77 621.8372630630503 NaN 0 621.8378295898438 PEAK HCD FTMS 0 0 0 20700 94721.0703125 0.1527892735181593 -16 0.46953582763671875 6 Unmodified _PFHPPLQLFF_ ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF 37.97399986684836 0.147754056278369 1 {M(Oxidation (M))|F}{I|L}Q 3 7 26.031 0 0 2.0964 0 0 165.07868005775987 685.3505343072874 850.4292143650473 0 0 0 0 0 1.079689690656103 0 0 0.3807196863200844 {M(Oxidation (M))|F}{I|L}Q 2.0964 - 44 + NaN NaN 129465.1 NaN 16834 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20707 84.087 NaN 62632 35 0 6073.2 0.263 + 35226 YVMPILGLI 9 37 509.80360959509403 1017.5926662569881 2 509.8035583496094 MULTI HCD FTMS 0 0 0 20700 55120.20703125 0.46964817789817626 6 -0.16362762451171875 7 Unmodified _YVMPILGLI_ ENSG00000186675|ENST00000373359|MAGEE2 2.302733041254933 0.33356062215410776 1 {I|L} 1 8 6.9897 0 0 0.68689 0 0 130.12283090718182 771.3698214166624 901.4926523238441 0 0 0 0 0 0 0 0 0 + {I|L} 0.68689 + + 4 + NaN NaN 92012.6 NaN 16835 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20708 84.09 NaN 204300 35 0 34260 0.261 -1 NFSCICDSGF 10 54 603.7325818574761 1205.4506107817522 2 603.7337646484375 MULTI HCD FTMS 0 0 0 20700 65233.3125 0.46198508986613945 -4 0.1183013916015625 8 2 Carbamidomethyl (C) _NFSC(Carbamidomethyl (C))IC(Carbamidomethyl (C))DSGF_ ENSG00000184916|ENST00000331782|JAG2;nc|ENSG00000184916|Q9Y219-2|JAG2 19.256988751693697 0.33098864134661865 1 SY{M(Oxidation (M))|F} 3 -1 38.984 0 0 3.234 0 0 790.2777147519511 0 790.2777147519511 0 16.026909627198407 0 0 0 0.9247425010840047 0 0.805462187404089 0 SY{M(Oxidation (M))|F} 3.234 - 72 NaN NaN 114685.2 NaN 16836 3870 20700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20710 84.095 NaN 4887100 35 0 793040 0.327 + 22765 QYILFPLRF 9 100 598.8448885976039 1195.6752242620078 2 598.8453369140625 MULTI HCD FTMS 0 0 0 20709 1738028.875 0.20138980701777356 -6 0.17748260498046875 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 152.41221235671458 6.276234901293889E-06 1 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 86.063 0 0 7.1978 7.1978 86.454 0 0 0 2.589541837315238 2.589541837315238 2.589541837315238 2.589541837315238 0 2.6549471895720984 1.3979400086720375 0 2.368415180652539 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};QY{I|L}{I|L}{M(Oxidation (M))|F}PR{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}[VG]{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};QY{M(Oxidation (M))|F}{I|L}{I|L}P{I|L}R{M(Oxidation (M))|F} 7.1978;6.9813;6.4244;6.2556;6.0127;5.8491;5.519;5.1707;5.0757;5.0056 +;+;-;-;-;-;-;-;-;- + 2096 NaN NaN 839585.8 NaN 16837 3871 20709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20711 84.1 NaN 904390 35 0 72305 0.261 + 26135 SPMDIFDMF 9 109 567.7281169239906 1133.441680914781 2 567.7279663085938 MULTI HCD FTMS 0 0 0 20709 230841.90625 0.37962049159164984 -9 0.26607513427734375 2 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}D[YT]YN{M(Oxidation (M))|F} 7 6 50.138 0 0 4.4235 0 0 165.08072323856283 0 165.08072323856283 0 37.66334779402399 0 0 0 1.25 0 0.566901560044258 0.3252574989159953 {M(Oxidation (M))|F}D[YT]YN{M(Oxidation (M))|F} 4.4235 - 923 + NaN NaN 238286.8 NaN 16838 3871 20709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20712 84.103 NaN 403950 35 0 27684 0.261 -1 YNCNSWVRE 9 83 614.2643832899751 1226.51421364675 2 614.2644653320312 MULTI HCD FTMS 0 0 0 20709 115402.3671875 0.4500651294063048 1 -0.0228271484375 3 Carbamidomethyl (C) _YNC(Carbamidomethyl (C))NSWVRE_ ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 14.838274106304384 0.23215694253501695 1 M{I|L}V{[VA]|[{I|L}G]}YY 7 -1 30.156 0 0 2.4587 0 0 0 384.0690624724861 384.0690624724861 -3.8693178344330263 0 -3.8693178344330263 0 0 1.8252574989159953 0 0 0 M{I|L}V{[VA]|[{I|L}G]}YY 2.4587 - 905 + NaN NaN 147436.5 NaN 16839 3871 20709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20713 84.106 NaN 598760 35 0 100760 0.262 + 27424 SYTYLSLGF 9 59 525.7608255682587 1049.5070982033174 2 525.7611083984375 MULTI HCD FTMS 0 0 0 20709 78827.2578125 0.34336039523972706 1 -0.0228271484375 4 Unmodified _SYTYLSLGF_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 54.773552608820026 0.024892918755467567 1 [YT]SY{I|L}S{I|L}G{M(Oxidation (M))|F} 9 2 + 67.145 0 0 6.3978 6.3978 92.28 0 0 0 57.936909460092 0.7378621416091846 0.7378621416091846 26.180993120779945 0 1.7302046884880937 0 0 0 [YT]SY{I|L}S{I|L}G{M(Oxidation (M))|F};[YT]SV[YT]{I|L}G{M(Oxidation (M))|F} 6.3978;3.9032 -;- 196 + NaN NaN 183622.5 NaN 16840 3871 20709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20714 84.11 NaN 732500 35 0 221790 0.261 + 29203 TYLDIFRDF 9 70 595.2981805865971 1188.5818082399942 2 595.2982177734375 MULTI HCD FTMS 0 0 0 20709 75739.9921875 0.45642195118483414 5 -0.13405609130859375 5 Unmodified _TYLDIFRDF_ ENSG00000072818|ENST00000158762|ACAP1 38.61474834105838 0.07170385841135779 1 [YT]{I|L}D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 9 0 + 66.257 0 0 5.5745 5.5745 91.415 0 0 0 25.642492736872597 50.05957525565542 25.642492736872597 35.09540584458449 0 1.5994850021680094 2 0.3252574989159953 0 + + [YT]{I|L}D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT]{I|L}D[KG]{M(Oxidation (M))|F}[QA]{M(Oxidation (M))|F};[YT][TA]{M(Oxidation (M))|F}{I|L}QQA{M(Oxidation (M))|F};[RP]EE[KG]D{I|L}[{M(Oxidation (M))|F}V] 5.5745;2.6218;1.4205;0.016234 +;-;-;- + 342 NaN NaN 194986.5 NaN 16841 3871 20709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20715 84.113 NaN 374520 35 0 44212 0.261 + 25848 SLYEFIFVT 9 80 559.7901191942782 1117.5656854553563 2 560.813232421875 MULTI HCD FTMS 0 0 0 20709 13475.6572265625 1 0 0 6 Unmodified _SLYEFIFVT_ REV__ENSG00000105464|ENST00000263269|GRIN2D 20.453626601364224 0.18364154288633264 1 EDETT 5 -1 23.143 0 0 2.0709 0 0 0 539.2688082330686 539.2688082330686 3.4331813463114678 0 0 0 0 0.3935078169319297 0 0 0 EDETT 2.0709 - 607 + NaN NaN 143212.3 NaN 16842 3871 20709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20717 84.118 NaN 850240 35 0 37262 0.327 + 26370 SSRKKLIEE 9 111 545.3168208601961 1088.6190887871921 2 545.31689453125 MULTI HCD FTMS 0 0 0 20716 671918.1875 0.1863805102413235 -42 1.2294235229492188 1 Unmodified _SSRKKLIEE_ tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1 3.5964929083625545 0.32375295897743744 1 {M(Oxidation (M))|F} 1 9 13.099 0 0 1.2033 0 0 923.5402293895344 0 923.5402293895344 0 1.1265464086293164 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2033 - 363 + NaN NaN 210123.8 NaN 16843 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20718 84.122 NaN 428030 35 0 72505 0.261 + -1 MINTPVDLSL 10 68 559.7901191942782 1117.5656854553563 2 559.7740478515625 MULTI HCD FTMS 0 0 0 20716 89711.5 1 0 0 2 Oxidation (M) _M(Oxidation (M))INTPVDLSL_ REV__ENSG00000178473|ENST00000380433|UCN3 36.506200033944 0.17572556831573002 1 VT{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]{I|L}S{I|L} 8 -1 37.419 0 0 3.3483 0 0 165.07887465644689 0 165.07887465644689 0 18.277456728880278 0 0 0 0.7742275032520141 0 1.0114393726401687 0 VT{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]{I|L}S{I|L} 3.3483 - 882 NaN NaN 163289.8 NaN 16844 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20719 84.126 NaN 322180 35 0 46307 0.261 -1 0 54 507.3789127563002 506.37163628970023 1 507.2546691894531 MULTI HCD FTMS 0 0 0 20716 26215.41015625 1 0 0 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 2.8841 0 0 341.2929447387221 0 341.2929447387221 0 1.17423111099761 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.8841 - 32 + NaN NaN 129178.7 NaN 16845 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20720 84.129 NaN 188360 35 0 18419 0.261 + 14523 LFDLGGQYL 9 46 513.2685389834679 1024.5225250337357 2 513.26953125 MULTI HCD FTMS 0 0 0 20716 92819.09375 0.5704941963061685 -2 0.052398681640625 4 Unmodified _LFDLGGQYL_ ENSG00000179950|ENST00000526683|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60 60.07390631473393 0.0174780869009295 1 {I|L}GGQY{I|L} 6 3 61.419 0 0 5.9949 0 0 375.18006445053874 0 375.18006445053874 0 42.836003313407076 0 0 0 2.1237125054200234 0 0 0.3807196863200844 + {I|L}GGQY{I|L} 5.9949 + + 435 NaN NaN 125024.4 NaN 16846 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20721 84.133 NaN 113700 35 0 12773 0.261 + 10595 IPMPDFDL 8 44 474.23067243025775 946.4467919273155 2 474.2308044433594 MULTI HCD FTMS 0 0 0 20716 36589.8828125 0.603686356174441 2 -0.04573822021484375 5 Unmodified _IPMPDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 12.531546534597751 0.5015908124873912 1 DP{M(Oxidation (M))|F}D{I|L} 5 4 25.221 0 0 2.6648 0 0 341.1764088361344 0 341.1764088361344 0 14.252057161061273 0 0 0 0.5 0 0 0 DP{M(Oxidation (M))|F}D{I|L} 2.6648 - 32 NaN NaN 113600.7 NaN 16847 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20722 84.136 NaN 204490 35 0 67260 0.261 + 21030 PLRRLRAQN 9 51 562.3436284264267 1122.6727039196533 2 562.3428344726562 MULTI HCD FTMS 0 0 0 20716 106631.9765625 1 0 0 6 Unmodified _PLRRLRAQN_ REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF 2.0597508629832335 0.3354026079994024 1 {I|L} 1 -1 3.9794 0 0 0.35446 0 0 358.31307228200177 648.2493380182249 1006.5624103002267 0 0 0 0 0 0 0 0 0 {I|L} 0.35446 + + 15 + NaN NaN 106609.3 NaN 16848 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20723 84.139 NaN 228030 35 0 33600 0.261 -1 HEIMLEISI 9 70 550.7848215906879 NaN 0 550.7843017578125 PEAK HCD FTMS 0 0 0 20716 15121.3974609375 0.4185795128312426 -2 0.052398681640625 7 Oxidation (M) _HEIM(Oxidation (M))LEISI_ ENST00000339600.5_1_7:10973108-10973165:-|nuORF 20.453626601364224 0.18435338882370536 1 {I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}GR 6 -1 22.484 0 0 2.0449 0 0 215.06372145260156 162.05597864322502 377.1197000958266 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}GR 2.0449 - 60 + NaN NaN 133224.5 NaN 16849 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20724 84.143 NaN 71975 35 0 15397 0.262 + 10139 IFNNHSSS 8 38 453.2097261082513 NaN 0 453.2094421386719 PEAK HCD FTMS 0 0 0 20716 25364.447265625 0.6537569613911486 11 -0.19884490966796875 8 Unmodified _IFNNHSSS_ REV__ENST00000220763.9_1_8:98155435-98155573:+|nuORF 2.577480529830294 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 1.5938 0 0 0.17623 0 0 512.2240959159183 229.13326440982658 741.3573603257448 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.17623 - 1 + NaN NaN 107443.5 NaN 16850 3872 20716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20726 84.148 NaN 395680 35 0 40542 0.327 + 13464 KYPENFFLL 9 62 585.8132425088911 1169.6119320845821 2 585.8136596679688 MULTI HCD FTMS 0 0 0 20725 205673.15625 0.0010373973626895754 306 -7.277618408203125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 58.483 0 0 5.0002 5.0002 86.272 0 0 0 6.399699876253777 42.02947800538006 6.399699876253777 9.208187539523749 0 2.0356668758921828 0 0.4247425010840047 0.5796896906561032 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 5.0002;4.2129;4.1686;3.3813 +;-;-;- + 319 NaN NaN 149493.3 NaN 16851 3873 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20727 84.152 NaN 369090 35 0 24132 0.261 + -1 MFALHSLLF 9 71 547.7894239010976 NaN 0 547.7753295898438 PEAK HCD FTMS 0 0 0 20725 13915.4140625 1 0 0 2 Oxidation (M) _M(Oxidation (M))FALHSLLF_ REV__ENSG00000186509|ENST00000335397|OR9Q1 23.1484247019978 0.16626532474190622 1 {I|L}DPT 4 -1 16.599 0 0 1.5179 0 0 502.27408598403264 162.05599390201408 664.3300798860467 0 0 0 0 0 0 0 0.6421590589602533 0 {I|L}DPT 1.5179 - 243 + NaN NaN 142070.9 NaN 16852 3873 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20728 84.156 NaN 144950 35 0 11436 0.261 -1 FTLTFCCS 8 48 489.705642780241 977.3967326272821 2 489.7060852050781 MULTI HCD FTMS 0 0 0 20725 35888.29296875 0.18494751119117883 -4 0.10817718505859375 3 Carbamidomethyl (C) _FTLTFC(Carbamidomethyl (C))CS_ OR8K5|p.G170C|1|0.36|ENSG00000181752|chr11:56159810-56159810|C/A|missense_variant 5.230669730166228 0.5342319408533849 1 {I|L} 1 -1 8.9794 0 0 0.91871 0 0 155.09371539573664 706.1933077447874 861.2870231405241 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 0.91871 + + 7 + NaN NaN 103151.8 NaN 16853 3873 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20729 84.159 NaN 256130 35 0 30752 0.261 + 35609 YYIFIPSKF 9 46 589.3195190429688 NaN 0 589.3195190429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 6 16.198 0 0 1.3766 0 0 272.0704442365248 528.2938326471311 800.364276883656 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 1.3766 - 34 + NaN NaN 119260 NaN 16854 3873 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20731 84.164 NaN 828070 35 0 144850 0.326 + 28246 TLLCGRGNC 9 66 468.7229936992112 935.4314344652224 2 468.7232360839844 MULTI HCD FTMS 0 0 0 20730 850642.625 1 0 0 1 Unmodified _TLLCGRGNC_ L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense 2.0597508629832335 0.3354026079994024 1 {I|L}{I|L}K 3 7 13.091 0 0 1.3994 0 0 59.049122440949255 519.0972384088499 578.1463608497992 0 0 0 0 0 0 0 0 0.7059771852360797 {I|L}{I|L}K 1.3994 - 30 + NaN NaN 208797.8 NaN 16855 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20732 84.168 NaN 1089600 35 0 297730 0.261 + 10513 IPEPIDPLF 9 67 520.7865196612423 1039.5584863892846 2 520.7869873046875 MULTI HCD FTMS 0 0 0 20730 534790.1875 0.5436943030824757 -10 0.2789154052734375 2 Unmodified _IPEPIDPLF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant 54.773552608820026 0.024892918755467567 1 DP{I|L}{M(Oxidation (M))|F} 4 5 51.186 0 0 4.9238 0 0 549.3165383576641 0 549.3165383576641 0 38.7113751626007 0 0 0 1.75 0 0.3252574989159953 0 + DP{I|L}{M(Oxidation (M))|F} 4.9238 + + 101 NaN NaN 243545 NaN 16856 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20733 84.172 NaN 474490 35 0 51680 0.261 + 21582 PYNDYFEYF 9 55 629.2585969444475 1256.502640955695 2 629.2586059570312 MULTI HCD FTMS 0 0 0 20730 210039.03125 0.03521296468913317 22 -0.27483367919921875 3 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 29.84058131909904 0.11198220037953927 1 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 5 45.433 0 0 3.6158 0 0 652.2497526450232 0 652.2497526450232 0 35.25576261223691 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.6158 + + 146 NaN NaN 160726.2 NaN 16857 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20734 84.175 NaN 308660 35 0 45927 0.261 + 26804 SYIDRLISVF 10 68 606.8343687306564 1211.6541845281126 2 606.8344116210938 MULTI HCD FTMS 0 0 0 20730 133465.03125 0.767630263304876 4 -0.11065673828125 4 Unmodified _SYIDRLISVF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 42.312485326615175 0.12533928745458864 1 [Y{I|L}][RV]{[ES]|[DT]|[{I|L}C]}{I|L}SV{M(Oxidation (M))|F} 10 3 + 53.918 0 0 4.45 4.45 83.519 0 0 0 8.547050297384487 16.214942046789687 8.547050297384487 6.7609125905568135 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0 [Y{I|L}][RV]{[ES]|[DT]|[{I|L}C]}{I|L}SV{M(Oxidation (M))|F};[Y{I|L}][RV]{[ES]|[DT]|[{I|L}C]}{I|L}W{M(Oxidation (M))|F};[Y{I|L}][RV]{[ES]|[DT]|[{I|L}C]}W{I|L}{M(Oxidation (M))|F};[YR][DV][{I|L}T]{I|L}SV{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}{[C(Carbamidomethyl (C))E]|[WC]} 4.45;3.892;3.333;2.1613;1.8439 -;-;-;-;- 322 NaN NaN 127635.5 NaN 16858 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20735 84.178 NaN 374610 35 0 33212 0.262 + 3122 EANAVFDIL 9 62 496.2583211276739 990.5020893221479 2 496.25823974609375 MULTI HCD FTMS 0 0 0 20730 239469.9375 0.829495335289055 4 -0.11065673828125 5 Unmodified _EANAVFDIL_ ENSG00000184967|ENST00000330579|NOC4L 45.69961567697781 0.039180348357221985 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L}{I|L} 8 5 + 65.468 0 0 6.6096 6.6096 91.785 0 0 0 20.157942671832316 23.58349385648225 20.157942671832316 17.386831541432315 0 0.9247425010840047 1.5228787452803376 0.5752574989159953 0.7614393726401688 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}NG{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{I|L}[NG]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{I|L}VAN 6.6096;4.8542;4.0281;3.7131 -;-;-;- 298 NaN NaN 144220.3 NaN 16859 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20736 84.182 NaN 238050 35 0 16121 0.261 + 8074 GILWRVLFF 9 83 575.8420685237851 1149.66958411437 2 575.8432006835938 MULTI HCD FTMS 0 0 0 20730 138596.375 0.4431166848505921 -6 0.1605682373046875 6 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 4.75600775471527 0.31496297302216103 1 D 1 9 6.0257 0 0 0.52412 0 0 61.05221663646564 970.5409029596311 1031.5931195960968 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.52412 - 87 + NaN NaN 132323.4 NaN 16860 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20737 84.185 NaN 315710 35 0 112300 0.261 -1 LYMRRKKL 8 59 562.3436284264267 1122.6727039196533 2 562.845458984375 MULTI HCD FTMS 0 0 0 20730 38323.63671875 0.4420463121621579 -2 0.04573822021484375 7 Oxidation (M) _LYM(Oxidation (M))RRKKL_ ENST00000427323.5_1_3:38390119-38397444:+|nuORF 2.8892196856762586 0.5377058178582064 1 W 1 -1 14.604 0 0 1.3008 0 0 918.5835600981674 0 918.5835600981674 0 7.6413688858352184 0 0 0 0 0 0 0 W 1.3008 - 49 + NaN NaN 146895 NaN 16861 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20738 84.188 NaN 119070 35 0 17187 0.261 + 6234 FPETLPESSLF 11 35 633.8160150923635 1265.617477251527 2 633.8169555664062 MULTI HCD FTMS 0 0 0 20730 68746.3984375 0.7123678640173937 2 -0.06549072265625 8 Unmodified _FPETLPESSLF_ ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 26.268140514670165 0.22820724222159966 1 Y[TP]{[CA]|SS}{I|L}{M(Oxidation (M))|F} 7 5 27.72 0 0 2.1902 0 0 452.22627455879064 0 452.22627455879064 0 20.730231979947646 0 0 0 0.5 0 0.8494850021680094 0 Y[TP]{[CA]|SS}{I|L}{M(Oxidation (M))|F} 2.1902 - 18 NaN NaN 121681.1 NaN 16862 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20739 84.192 NaN 151000 35 0 9743 0.261 + 7779 FYNSFLEQL 9 63 580.7842096664444 1159.5538663996888 2 580.7840576171875 MULTI HCD FTMS 0 0 0 20730 39169.4140625 0.4715573072179136 3 -0.09474945068359375 9 Unmodified _FYNSFLEQL_ DTD1-RALGAPA2|1|fusion;ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF 53.31671820480216 0.026930930319421505 1 [Q{I|L}]E[C(Carbamidomethyl (C))Q]{I|L}EQ{I|L} 9 5 + 58.891 0 0 5.0788 5.0788 86.398 0 0 0 7.147642715192504 37.65392349177978 7.147642715192504 9.208187539523749 0 1.3494850021680094 0 0.6694451763165201 0.3807196863200844 [Q{I|L}]E[C(Carbamidomethyl (C))Q]{I|L}EQ{I|L};[Q{I|L}]E[C(Carbamidomethyl (C))Q]{I|L}E[AG]{I|L};[Q{I|L}]E{I|L}[C(Carbamidomethyl (C))Q]EQ{I|L};[Q{I|L}]E{I|L}[C(Carbamidomethyl (C))Q]E[AG]{I|L} 5.0788;4.2847;3.9871;3.193 -;-;-;- 186 NaN NaN 113794 NaN 16863 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20740 84.195 NaN 114660 35 0 24875 0.262 + 6951 FPVPGSGLVL 10 37 493.2892470038733 984.5639410745466 2 493.2896728515625 MULTI HCD FTMS 0 0 0 20730 15400.119140625 0.410396716185447 -1 0.0162200927734375 10 Unmodified _FPVPGSGLVL_ ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2 10.073929032068715 0.4168838835836452 1 V{I|L} 2 8 25.969 0 0 2.6376 0 0 754.399576092506 0 754.399576092506 0 16.365006360318688 0 0 0 0.5 0 0 0 + V{I|L} 2.6376 + + 7 NaN NaN 92278.7 NaN 16864 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20741 84.198 NaN 239910 35 0 34125 0.261 + 866 AYADFVVTF 9 62 516.7560020289333 NaN 0 516.7550659179688 PEAK HCD FTMS 0 0 0 20730 62154.57421875 0.5823202412902679 -3 0.06856536865234375 11 Unmodified _AYADFVVTF_ ENSG00000153786|ENST00000313732|ZDHHC7;ENST00000569488.1_1_16:85011531-85024224:-|nuORF;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7 24.020572477871973 0.16041128140741606 1 TVV 3 7 32.307 0 0 3.1321 0 0 165.08066238847022 564.2099127448483 729.2905751333185 0 0 0 0 0 1.7614393726401687 0 0 0 TVV 3.1321 - 146 + NaN NaN 125124.5 NaN 16865 3874 20730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20743 84.203 NaN 2229500 35 0 550710 0.327 + 28534 TPQFPDMIL 9 93 531.2701063807082 1060.5256598282162 2 531.2706298828125 MULTI HCD FTMS 0 0 0 20742 1640881.625 0.602580809170906 -5 0.13750457763671875 1 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 51.629811660486645 0.02929079705179888 1 K{M(Oxidation (M))|F}PDM{I|L}{I|L} 7 3 50.82 0 0 4.792 0 0 198.10029799629064 0 198.10029799629064 0 33.99751981665837 0 0 0 1.5994850021680094 0 0.7614393726401688 0 K{M(Oxidation (M))|F}PDM{I|L}{I|L} 4.792 - 630 NaN NaN 430831.1 NaN 16866 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20744 84.207 NaN 1065000 35 0 122420 0.261 + 24311 RYGLFLGAIF 10 100 578.828190541756 1155.641828150312 2 578.8291015625 MULTI HCD FTMS 0 0 0 20742 201394.0625 0.5108935518002496 -2 0.0555877685546875 2 Unmodified _RYGLFLGAIF_ ENSG00000101363|ENST00000373606|MANBAL 52.268347100219714 0.06954005568441465 1 {M(Oxidation (M))|F}{I|L}GA{I|L}{M(Oxidation (M))|F} 6 4 46.142 0 0 3.9927 0 0 489.2692127912125 0 489.2692127912125 0 -2.43980478910715 -2.43980478910715 0 0 1.8684151806525389 0 0 0 + {M(Oxidation (M))|F}{I|L}GA{I|L}{M(Oxidation (M))|F} 3.9927 + + 972 NaN NaN 245833.1 NaN 16867 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20745 84.211 NaN 355730 35 0 71476 0.261 -1 IPVTIMDVF 9 52 525.7805101044983 1049.5464672757964 2 525.7803955078125 MULTI HCD FTMS 0 0 0 20742 106318.4453125 0.19844932656411263 17 -0.204071044921875 3 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 26.88365393820708 0.12808753336095696 1 {I|L}S{I|L}G{M(Oxidation (M))|F} 5 -1 41.454 0 0 3.9497 0 0 514.244908734524 0 514.244908734524 0 31.989700043360187 0 0 0 0.5 0 0 0 {I|L}S{I|L}G{M(Oxidation (M))|F} 3.9497 - 60 + NaN NaN 141965.9 NaN 16868 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20746 84.214 NaN 282520 35 0 51615 0.261 + 31592 VYIIYGMYF 9 71 592.7887144597331 1183.5628759862661 2 592.78955078125 MULTI HCD FTMS 0 0 0 20742 35413.6171875 0.3933917512531763 1 -0.026123046875 4 Oxidation (M) _VYIIYGM(Oxidation (M))YF_ ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372-2|MPG;nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372|MPG 56.04830969593885 0.023109620888794903 1 [YV]{I|L}{I|L}Y{[CT]|[{M(Oxidation (M))|F}G]}Y{M(Oxidation (M))|F} 9 0 + 36.877 0 0 3.1158 3.1158 88.299 0 0 0 5.6424927368726046 18.91827190205533 5.6424927368726046 36.87707207549608 0 1.305462187404089 0 0 0 + + [YV]{I|L}{I|L}Y{[CT]|[{M(Oxidation (M))|F}G]}Y{M(Oxidation (M))|F} 3.1158 + + 151 NaN NaN 129140.8 NaN 16869 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20747 84.218 NaN 915610 35 0 108330 0.261 + 7992 GFFGGVIRKM 10 90 556.308184653102 NaN 0 556.3087768554688 PEAK HCD FTMS 0 0 0 20742 77462.078125 0.23951162282182906 -3 0.08510589599609375 5 Unmodified _GFFGGVIRKM_ REV__ENST00000262158.6_1_18:46446894-46447551:-|nuORF 7.910154910731844 0.33341429274560913 1 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G 7 -1 36.935 0 0 3.3257 0 0 166.19168928118933 162.0559023492797 328.24759163046906 0 0 0 0 0 0 0 1.2198565171985374 0 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G 3.3257 - 566 + NaN NaN 220709 NaN 16870 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20748 84.221 NaN 80105 35 0 8071.7 0.264 -1 0 45 406.2482467771253 810.4819406210506 2 406.2486572265625 MULTI HCD FTMS 0 0 0 20742 74365.1484375 0.020595786156676527 19 -0.21761322021484375 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.665 0 0 645.4031422585491 0 645.4031422585491 0 -6.510234424404686 -6.510234424404686 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.665 - 11 + NaN NaN 91841.7 NaN 16871 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20749 84.224 NaN 564600 35 0 62206 0.261 + 32796 WSIKELIYK 9 55 590.342529296875 NaN 0 590.342529296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _WSIKELIYK_ REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1 10.823927491677226 0.2427956001690155 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 30.802 0 0 2.6155 0 0 273.1111150754424 528.3027113580687 801.4138264335111 0 0 0 0 0 2 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.6155 - 26 NaN NaN 165281.9 NaN 16872 3875 20742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20751 84.229 NaN 1633900 35 0 361850 0.327 + 29005 TYEAQFFGF 9 85 555.2505716493226 1108.4865903654452 2 555.2508544921875 MULTI HCD FTMS 0 0 0 20750 838210.4375 0.28972160008876113 -8 0.2260589599609375 1 Unmodified _TYEAQFFGF_ ENSG00000167842|ENST00000611091|MIS12;MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant 188.57702930522862 4.893362302778831E-13 1 [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 131.76 0 0 11.887 11.887 97.465 0 0 0 23.267798476780428 112.9976535038188 23.267798476780428 20.757659435244747 0 2.9247425010840047 1.5228787452803376 2.4135291967670716 1.1549471895720984 + + [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EA[TP]A[NG]G{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[W{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{M(Oxidation (M))|F} 11.887;10.014;4.3499;2.7009 +;-;-;- + 865 NaN NaN 333281.8 NaN 16873 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20752 84.234 NaN 810960 35 0 35342 0.261 -1 0 106 523.3036148573681 1044.592676781536 2 523.3036499023438 MULTI HCD FTMS 0 0 0 20750 346888.5 0.17571238945113257 47 -0.7147598266601562 2 NaN NaN 1 Q 1 -1 10.911 0 0 1.0445 0 0 502.29918836622954 411.2230468576496 913.5222352238791 0 0 0 0 0 0.6307196863200843 0 0 0 Q 1.0445 - 268 + NaN NaN 204949.6 NaN 16874 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20753 84.237 NaN 856970 35 0 46945 0.261 -1 0 112 567.3307443934895 1132.6469358537788 2 567.3312377929688 MULTI HCD FTMS 0 0 0 20750 387944.0625 0.2597111585457291 -16 0.4626007080078125 3 NaN NaN 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 25.394 0 0 2.242 0 0 558.4374764805351 0 558.4374764805351 0 12.294869019082952 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.242 - 758 + NaN NaN 228912.1 NaN 16875 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20754 84.24 NaN 657780 35 0 92072 0.261 + 20646 PFHPPLQLFF 10 79 621.8372630630503 NaN 0 621.8370361328125 PEAK HCD FTMS 0 0 0 20750 299277.65625 0.48274808897108246 -10 0.28192901611328125 4 Unmodified _PFHPPLQLFF_ ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF 49.93300154707207 0.08046178586069505 1 {I|L}CP[{I|L}P]Q{I|L} 7 5 32.74 0 0 2.6368 0 0 165.07869507303718 309.1241510637693 474.2028461368065 0 0 0 0 0 1.9247425010840047 0 0 0.3807196863200844 {I|L}CP[{I|L}P]Q{I|L} 2.6368 - 175 + NaN NaN 202358.6 NaN 16876 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20755 84.244 NaN 158670 35 0 25905 0.261 -1 FCSCPPEYF 9 51 603.7327270507812 NaN 0 603.7327270507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SC(Carbamidomethyl (C))PPEYF_ ENSG00000182326|ENST00000360817|C1S;ENST00000463798.1_1_12:7171527-7172615:+|nuORF 12.531546534597751 0.23452071659215576 1 YS{I|L} 3 -1 27.594 0 0 2.2891 0 0 165.07693441320367 674.1743258111936 839.2512602243974 0 0 0 0 0 1.3252574989159953 0 0.805462187404089 0 YS{I|L} 2.2891 - 24 + NaN NaN 106984.7 NaN 16877 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20756 84.247 NaN 191140 35 0 27274 0.261 + 5486 FIYAYTIW 8 54 538.7744750976562 NaN 0 538.7744750976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FIYAYTIW_ REV__tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1 20.871210003555333 0.3841330378571171 1 {I|L}{M(Oxidation (M))|F} 2 -1 16.013 0 0 1.4889 0 0 204.08851824326274 608.2713717096311 812.3598899528938 0 0 0 0 0 0.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F} 1.4889 - 18 + NaN NaN 108330.1 NaN 16878 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20757 84.25 NaN 185300 35 0 38440 0.261 -1 RCNMKNNF 8 50 550.24365234375 NaN 0 550.24365234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))NM(Oxidation (M))KNNF_ ENSG00000204381|ENST00000375614|LAYN;nc|ENSG00000204381|Q6UX15|LAYN 2.577480529830294 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.63631 0 0 374.1989956037124 574.1817389390058 948.3807345427181 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63631 + + 5 + NaN NaN 104497.1 NaN 16879 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20758 84.254 NaN 110960 35 0 7670.4 0.262 + 12273 KLPALFFL 8 45 474.7992248535156 NaN 0 474.7992248535156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 24.67388899826682 0.38182156912090326 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 6 20.969 0 0 2.2129 0 0 131.09501684860385 519.3303283010005 650.4253451496043 0 0 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2129 + + 13 + NaN NaN 91075.5 NaN 16880 3876 20750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20760 84.258 NaN 10271000 35 0 1765100 0.327 + 22766 QYILFPLRF 9 97 598.8448885976039 1195.6752242620078 2 598.8451538085938 MULTI HCD FTMS 0 0 0 20759 8630173 1 0 0 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 181.3275282027936 9.859558525874733E-13 1 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 89.193 0 0 7.4596 7.4596 86.525 0 0 0 1.7117985211327635 1.7117985211327635 1.7117985211327635 1.7117985211327635 0 2.6549471895720984 1.3979400086720375 0 2.693672679568534 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};QY{M(Oxidation (M))|F}{I|L}{I|L}P{I|L}R{M(Oxidation (M))|F};[Q{I|L}]Y{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]{I|L}Q{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[YV]{I|L}R{M(Oxidation (M))|F};{I|L}{I|L}YQ{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 7.4596;7.3165;6.7907;6.0681;5.3992;5.3669;5.0713;4.924;4.8404;4.7039 +;+;-;-;-;-;-;-;-;- + 2029 NaN NaN 905784.8 NaN 16881 3877 20759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20761 84.263 NaN 1316200 35 0 62164 0.261 -1 0 123 545.3168208601961 1088.6190887871921 2 545.3169555664062 MULTI HCD FTMS 0 0 0 20759 2361254 0.6549781409650651 -37 1.0712738037109375 2 NaN NaN 1 KN 2 -1 12.307 0 0 1.1305 0 0 828.4370594709 0 828.4370594709 0 1.0480714659967223 0 0 0 0 0 0 0 KN 1.1305 - 238 NaN NaN 278608.4 NaN 16882 3877 20759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20762 84.266 NaN 400440 35 0 42774 0.261 + 28362 TPDMQHELI 9 63 542.2615356445312 NaN 0 542.2615356445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TPDMQHELI_ REV__ENSG00000146090|ENST00000361132|RASGEF1C;REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C 34.40172386719151 0.09622929880997558 1 Q{M(Oxidation (M))|F} 2 -1 17.268 0 0 1.5952 0 0 198.0959237287123 606.2581270807249 804.3540508094372 0 0 0 0 0 0.7302046884880937 0 0 0.28872548999643577 Q{M(Oxidation (M))|F} 1.5952 - 53 + NaN NaN 162676 NaN 16883 3877 20759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20763 84.269 NaN 171430 35 0 39225 0.261 + 15752 LPFPEVTL 8 39 458.2629125748418 NaN 0 458.2629699707031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPFPEVTL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 44.40701690623563 0.27848148945719364 1 PE[EP]VT 6 3 33.778 0 0 3.6935 0 0 131.09478910819195 128.07161890201408 259.16640801020606 0 0 0 0 0 1.4247425010840047 0 0.7134679910804405 0 PE[EP]VT 3.6935 - 23 + NaN NaN 105464.9 NaN 16884 3877 20759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20766 84.281 NaN 962590 35 0 139480 0.411 + 25812 SLPKFYLLF 9 120 564.3296809184194 1126.6448089036387 2 564.3299560546875 MULTI HCD FTMS 0 0 0 20765 458812.46875 0.27915303192307744 -12 0.3010101318359375 1 Unmodified _SLPKFYLLF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 53.832793166522166 0.026208976789938845 1 {[TV]|[{I|L}S]}PK{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 55.314 0 0 4.9096 4.9096 88.573 0 0 0 26.846237737811762 14.084165411656073 14.084165411656073 16.179315557082383 0 2.024227503252014 1.6989700043360187 0 0 + + {[TV]|[{I|L}S]}PK{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}[KP]S{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}[QA]{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}Y{M(Oxidation (M))|F}[KP]S{I|L}{M(Oxidation (M))|F};{I|L}{I|L}Y{M(Oxidation (M))|F}[QA]{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}{[TV]|[{I|L}S]} 4.9096;3.4736;3.0501;2.5;2.0765;0.50164 +;-;-;-;-;- + 1272 + NaN NaN 374515.2 NaN 16885 3879 20765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20768 84.288 NaN 1162700 35 0 344620 0.327 + 10514 IPEPIDPLF 9 60 520.7865196612423 1039.5584863892846 2 520.7864379882812 MULTI HCD FTMS 0 0 0 20767 793762.0625 0.8069779915029686 -4 0.0588226318359375 1 Unmodified _IPEPIDPLF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant 54.773552608820026 0.024892918755467567 1 [{I|L}P]E[{I|L}P]DP{I|L}{M(Oxidation (M))|F} 9 0 + 51.437 0 0 4.948 4.948 91.024 0 0 0 0.20689673945462062 43.88866283220501 0.20689673945462062 51.43684392785687 0 2.1549471895720984 0 0.3054621874040891 0 + + [{I|L}P]E[{I|L}P]DP{I|L}{M(Oxidation (M))|F} 4.948 + + 116 NaN NaN 265239.7 NaN 16886 3880 20767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20769 84.292 NaN 288190 35 0 42641 0.261 + 509 ANRGSSHAH 9 57 468.7229936992112 935.4314344652224 2 468.722900390625 MULTI HCD FTMS 0 0 0 20767 313979.21875 0.3691082594761813 6 -0.05588531494140625 2 Unmodified _ANRGSSHAH_ REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF 1.6526216038709556 0.33848895094777925 1 {I|L}{I|L}K 3 -1 9.3534 0 0 0.9999 0 0 59.05522704510367 519.0960177057249 578.1512447508286 0 0 0 0 0 0 0 0 0.3807196863200844 {I|L}{I|L}K 0.9999 - 11 + NaN NaN 137481.4 NaN 16887 3880 20767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20771 84.297 NaN 342070 35 0 36837 0.411 + 13465 KYPENFFLL 9 64 585.8132425088911 1169.6119320845821 2 585.8131713867188 MULTI HCD FTMS 0 0 0 20770 317131.09375 0.0015995814246328537 314 -7.526268005371094 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 60.894 0 0 5.2063 5.2063 86.611 0 0 0 0.4968564743430548 34.942234600302164 0.4968564743430548 9.208187539523749 0 1.9802046884880937 0 0 1.066901560044258 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 5.2063;4.4191;4.2641;3.4768 +;-;-;- + 391 NaN NaN 204515.7 NaN 16888 3881 20770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20773 84.304 NaN 1024300 35 0 59672 0.327 + 26136 SPMDIFDMF 9 113 567.7281169239906 1133.441680914781 2 567.7305297851562 MULTI HCD FTMS 0 0 0 20772 215213.15625 0.35391894608657326 2 -0.019287109375 1 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 36.67 0 0 3.2353 0 0 559.2321650550409 0 559.2321650550409 0 25.70107520596089 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2353 + + 368 + NaN NaN 243221.9 NaN 16889 3882 20772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20774 84.309 NaN 718170 35 0 72817 0.261 -1 MKSCARKLW 9 73 582.8051436978249 1163.5957344624496 2 583.3092651367188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKSCARKLW_ ENST00000512467.5_1_5:143553879-143554005:+|nuORF 28.486842064014134 0.11819662193267319 1 {I|L}T{I|L}{[NV]|[RG]}{[QS]|[NT]}W 8 -1 62.797 0 0 5.3968 0 0 204.0877244160992 0 204.0877244160992 0 48.10402823752675 0 0 0 1.8807196863200843 0 0.805462187404089 1.6549471895720984 {I|L}T{I|L}{[NV]|[RG]}{[QS]|[NT]}W 5.3968 - 321 + NaN NaN 191188.8 NaN 16890 3882 20772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20775 84.312 NaN 471590 35 0 61606 0.261 + 16836 LYEEAFTVF 9 82 559.7748413085938 NaN 0 559.7748413085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LYEEAFTVF_ CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1 25.399314129420986 0.1511568710901456 1 {I|L}N{I|L}C(Carbamidomethyl (C))EN 6 8 14.83 0 0 1.327 0 0 130.02938408027495 241.15525232486564 371.1846364051406 0 0 0 0 0 0.2742275032520141 0 0.25 0.7614393726401688 {I|L}N{I|L}C(Carbamidomethyl (C))EN 1.327 - 271 + NaN NaN 160742.5 NaN 16891 3882 20772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20778 84.323 NaN 1819400 35 0 428110 0.327 + 28535 TPQFPDMIL 9 91 531.2701063807082 1060.5256598282162 2 531.2706298828125 MULTI HCD FTMS 0 0 0 20777 2522804.75 0.9264493577562032 4 -0.0384521484375 1 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 53.832793166522166 0.026208976789938845 1 CPDM{I|L}{I|L} 6 4 47.145 0 0 4.4454 0 0 370.2198963849625 0 370.2198963849625 0 30.32226753704853 0 0 0 1.5629529932484498 0 0.7614393726401688 0 CPDM{I|L}{I|L} 4.4454 - 775 NaN NaN 363336.8 NaN 16892 3884 20777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20779 84.327 NaN 1221800 35 0 118450 0.261 -1 MKSCARKLW 9 87 582.8051436978249 1163.5957344624496 2 582.8065185546875 MULTI HCD FTMS 0 0 0 20777 620062.375 0.11025894018920843 -15 0.28436279296875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKSCARKLW_ ENST00000512467.5_1_5:143553879-143554005:+|nuORF 28.486842064014134 0.11819662193267319 1 {I|L}T{I|L}{[NV]|[RG]}{[QS]|[NT]}W 8 -1 62.866 0 0 5.4028 0 0 204.0880763589542 0 204.0880763589542 0 42.68909768562352 0 0 0 1.8807196863200843 0 1.0994850021680094 1.610924374808178 {I|L}T{I|L}{[NV]|[RG]}{[QS]|[NT]}W 5.4028 - 509 + NaN NaN 278564.8 NaN 16893 3884 20777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20780 84.331 NaN 324550 35 0 53701 0.261 + 21583 PYNDYFEYF 9 46 629.2592163085938 NaN 0 629.2592163085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 23.789781309258295 0.16196040133829917 1 YE{M(Oxidation (M))|F}Y 4 6 29.24 0 0 2.3271 0 0 165.0813917397134 486.16217981510005 651.2435715548135 0 0 0 0 0 1.3807196863200843 0 0 0 YE{M(Oxidation (M))|F}Y 2.3271 - 21 + NaN NaN 131229.9 NaN 16894 3884 20777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20782 84.336 NaN 223950 35 0 16954 0.411 + 15161 LMSLIINTF 9 84 534.2943455957356 NaN 0 534.2938232421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 92.65332237495696 6.141094495909048E-05 1 {I|L}{I|L}NT 4 5 54.954 0 0 5.1523 0 0 460.2379088654962 162.05610071353752 622.2940095790337 0 0 0 0 0 2.2302046884880937 0 1.4604093769761874 0 + {I|L}{I|L}NT 5.1523 + + 275 + NaN NaN 149260.2 NaN 16895 3885 20781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20785 84.349 NaN 2695600 35 0 617240 0.327 + 29006 TYEAQFFGF 9 100 555.2505716493226 1108.4865903654452 2 555.2516479492188 MULTI HCD FTMS 0 0 0 20784 2003439.625 0.6924749536255059 3 -0.03200531005859375 1 Unmodified _TYEAQFFGF_ ENSG00000167842|ENST00000611091|MIS12;MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant 205.7785088242617 1.0412822304099307E-17 1 [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 133.37 0 0 12.032 12.032 92.45 0 0 0 6.56702275291029 16.47817481888636 6.56702275291029 6.56702275291029 0 3.2134679910804405 1.5228787452803376 2.2856668758921828 1.1549471895720984 + + [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YE]TAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YE]ATQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YE]TA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YE]AT[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]E{M(Oxidation (M))|F}AQ{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]E{M(Oxidation (M))|F}A[AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 12.032;11.44;10.272;10.159;9.567;8.3996;8.2285;6.8034;6.7609;5.6793 +;-;-;-;-;-;-;-;-;- + 1445 NaN NaN 506575 NaN 16896 3887 20784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20786 84.354 NaN 932580 35 0 180980 0.261 + 1309 AYNEGIINLL 10 81 560.3064908613964 1118.5984287895926 2 560.3068237304688 MULTI HCD FTMS 0 0 0 20784 131635.90625 0.10197314271261333 -8 0.06887054443359375 2 Unmodified _AYNEGIINLL_ ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant 91.08480475639789 0.0009191514194420671 1 EG{I|L}{I|L}N{I|L}{I|L} 7 3 71.407 0 0 6.3836 0 0 348.14363295722814 0 348.14363295722814 0 44.495557461415416 0 0 0 2.4361818737241734 0 0.5994850021680094 0.3494850021680094 + EG{I|L}{I|L}N{I|L}{I|L} 6.3836 + + 587 NaN NaN 232770.5 NaN 16897 3887 20784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20787 84.357 NaN 544130 35 0 80202 0.261 + 4964 FATLVDVVV 9 53 481.7814881976743 961.5484234621487 2 481.781494140625 MULTI HCD FTMS 0 0 0 20784 252758.3125 0.3442917345713807 -7 0.0620574951171875 3 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 57.47134341890925 0.0211188941628804 1 VVDV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVV 9 6 + 57.386 0 0 5.9681 5.9681 92.951 0 0 0 2.393324630099869 31.9800716418942 2.393324630099869 57.386146764301884 0 1 1.3010299956639813 0.805462187404089 0 VVDV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVV 5.9681 - 89 NaN NaN 176645.2 NaN 16898 3887 20784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20789 84.362 NaN 1080200 35 0 37428 0.327 -1 0 123 567.3307443934895 1132.6469358537788 2 567.3312377929688 MULTI HCD FTMS 0 0 0 20788 952798.125 0.637855631323004 -4 0.0384521484375 1 NaN NaN 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 20.006 0 0 1.7663 0 0 558.4377206211601 0 558.4377206211601 0 8.746575985573205 0 0 0 0 0 0.3252574989159953 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.7663 - 447 + NaN NaN 262531.5 NaN 16899 3888 20788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20790 84.366 NaN 856370 35 0 42100 0.261 + 9900 IAVSATRGSAL 11 116 523.3036148573681 1044.592676781536 2 523.3031616210938 MULTI HCD FTMS 0 0 0 20788 255788.75 0.12956685637378693 59 -1.17559814453125 2 Unmodified _IAVSATRGSAL_ ENST00000480321.1_1_13:113699393-113699726:+|nuORF 4.897010918128616 0.3974440401582579 1 AWDPD 5 10 16.759 0 0 1.6043 0 0 130.2018209239173 327.1455477350219 457.3473686589392 0 0 0 0 0 0 0 0.9731975075880328 0 AWDPD 1.6043 - 317 + NaN NaN 227581.8 NaN 16900 3888 20788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20791 84.37 NaN 397190 35 0 61675 0.261 + 26542 SVMLELVAL 9 53 495.78043074846806 989.5463085637361 2 495.7808532714844 MULTI HCD FTMS 0 0 0 20788 216083.5 0.34029259366142867 -4 0.0384521484375 3 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 81.61307344734483 0.005330412723537057 1 {I|L}E{I|L}VA{I|L} 6 3 77.484 0 0 7.8303 0 0 333.1339211019245 0 333.1339211019245 0 64.2968313743259 0 0 0 2.3494850021680094 0 1.610924374808178 0 + {I|L}E{I|L}VA{I|L} 7.8303 + + 113 NaN NaN 151674.8 NaN 16901 3888 20788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20793 84.375 NaN 986460 35 0 61030 0.411 + 27732 TASWPDWAL 9 142 523.7507309158307 NaN 0 523.7509155273438 PEAK HCD FTMS 0 0 0 20792 542554.6875 1 0 0 1 Unmodified _TASWPDWAL_ ENSG00000152137|ENST00000281938|HSPB8 68.08070601005525 0.010199203163486428 1 AWDPD 5 6 33.783 0 0 3.2313 0 0 131.09625025476652 327.14437414848 458.2406244032465 0 0 0 0 0 1.5283773187068794 0 0.9476212463643423 0 AWDPD 3.2313 - 217 + NaN NaN 387144.8 NaN 16902 3889 20792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20795 84.382 NaN 3496400 35 0 552850 0.327 + 22767 QYILFPLRF 9 109 598.8448885976039 1195.6752242620078 2 598.844970703125 MULTI HCD FTMS 0 0 0 20794 1927092.5 0.22329708801897713 13 -0.15834808349609375 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 131.26759243768294 0.0005280990274065272 1 QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 73.986 0 0 6.1878 6.1878 83.611 0 0 0 0.5252610008323586 0.5252610008323586 0.5252610008323586 0.5252610008323586 0 2.166386562212267 1.3979400086720375 0 0.2302046884880938 + + QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}S{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}SW;QY{M(Oxidation (M))|F}{I|L}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F} 6.1878;6.1439;5.4747;5.2232;4.6571;4.5908;4.2821;3.7989;3.7763;3.7364 +;+;-;-;-;-;-;-;-;- + 4583 + NaN NaN 610920.4 NaN 16903 3890 20794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20796 84.386 NaN 1687800 35 0 81379 0.261 -1 0 113 545.3168208601961 1088.6190887871921 2 545.31689453125 MULTI HCD FTMS 0 0 0 20794 2010637.875 0.5577222346776116 -24 0.434814453125 2 NaN NaN 1 KN 2 -1 12.307 0 0 1.1305 0 0 828.43657118965 0 828.43657118965 0 1.5937938131220637 0 0 0 0 0 0 0 KN 1.1305 - 149 NaN NaN 339676.1 NaN 16904 3890 20794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20797 84.39 NaN 1368000 35 0 255260 0.261 + 16855 LYEQAFQLL 9 75 562.8034341499896 1123.592315366779 2 562.8035888671875 MULTI HCD FTMS 0 0 0 20794 397270.90625 0.31164115046994245 -5 0.0464019775390625 3 Unmodified _LYEQAFQLL_ ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD 110.6747026088012 0.0028322563155251486 1 [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L} 9 0 + 101.05 0 0 8.9931 8.9931 92.959 0 0 0 18.116742845273066 76.08349385648225 18.116742845273066 9.208187539523749 0 2.3494850021680094 1.3979400086720375 0.6382104921644451 1.336696871556164 + + [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]EQA{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}]{M(Oxidation (M))|F}A[YE]Q{I|L}{I|L} 8.9931;8.1736;7.6122;6.6626;6.1683;5.843;5.8003;5.4462;4.9808;4.8759 +;-;-;-;-;-;-;-;-;- + 604 NaN NaN 292751.6 NaN 16905 3890 20794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20798 84.393 NaN 408060 35 0 39668 0.261 + 5615 FLWMKKPFF 9 67 622.3381827120403 NaN 0 622.3385009765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FLWMKKPFF_ ENST00000377191.4_1_20:21337251-21338378:+|nuORF 13.50788311687929 0.22978952576613207 1 {M(Oxidation (M))|F}{I|L}Q 3 7 11.427 0 0 0.91953 0 0 166.08045863066883 685.3465430488976 851.4270016795665 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}Q 0.91953 - 39 + NaN NaN 148883.9 NaN 16906 3890 20794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20800 84.398 NaN 306360 35 0 52519 0.327 + 15982 LPQPEVILL 9 41 511.31834386091805 NaN 0 511.31829833984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LPQPEVILL_ ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 21.536976647645854 0.17708171045360593 1 {I|L}{I|L}V 3 7 25.956 0 0 2.5431 0 0 131.09472644938654 561.2675875299436 692.3623139793301 0 0 0 0 0 1.3252574989159953 0 0 0 {I|L}{I|L}V 2.5431 - 12 + NaN NaN 131125.6 NaN 16907 3891 20799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20801 84.402 NaN 519860 35 0 41263 0.261 + 3982 EREPQQTLW 9 94 593.7964394356845 1185.578325938169 2 593.796142578125 MULTI HCD FTMS 0 0 0 20799 386459.3125 0.6198363295410473 -8 0.08103179931640625 2 Unmodified _EREPQQTLW_ REV__ENSG00000135686|ENST00000564996|KLHL36;REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36 46.020951573049366 0.037705236580089195 1 T{I|L}VNQSW 7 -1 60.068 0 0 5.0665 0 0 339.15510756660314 0 339.15510756660314 0 27.66158203548641 0 0 0 1.0484550065040281 0 0.6307196863200843 0.805462187404089 T{I|L}VNQSW 5.0665 - 1053 NaN NaN 171824.5 NaN 16908 3891 20799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20803 84.407 NaN 1160900 35 0 165310 0.393 + 25813 SLPKFYLLF 9 131 564.3296809184194 1126.6448089036387 2 564.3300170898438 MULTI HCD FTMS 0 0 0 20802 1527286.75 0.9292396260284571 1 -0.00687408447265625 1 Unmodified _SLPKFYLLF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 66.45667989310934 0.010234776021261575 1 {[TV]|[{I|L}S]}PK{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 62.475 0 0 5.5452 5.5452 88.818 0 0 0 11.476497255188818 26.121053764100992 11.476497255188818 12.404195767691121 0 2.298455006504028 2 0.6549471895720984 0 + + {[TV]|[{I|L}S]}PK{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}PK[Y{I|L}]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}QA{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F};[KP]{I|L}S{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F};[Q{I|L}]{I|L}A{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[AG]A{M(Oxidation (M))|F}Y{I|L}{I|L}{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[Y{I|L}]S{I|L}{I|L}{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[Y{I|L}]{I|L}S{I|L}{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}Y{I|L}{I|L}{M(Oxidation (M))|F} 5.5452;4.4443;3.663;3.3162;3.002;2.8457;2.8298;2.7868;2.3469 +;-;-;-;-;-;-;-;- + 2559 NaN NaN 416533.6 NaN 16909 3892 20802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20806 84.42 NaN 1220900 35 0 52618 0.327 -1 0 117 553.8301034429838 1105.6456539527676 2 553.8303833007812 MULTI HCD FTMS 0 0 0 20805 970429.0625 0.4711956078737176 -5 0.0459747314453125 1 NaN NaN 1 D 1 -1 7.9759 0 0 0.72138 0 0 105.07911440200435 882.4918744932442 987.5709888952485 0 0 0 0 0 0.28872548999643577 0 0.3494850021680094 0 D 0.72138 - 251 + NaN NaN 273764.2 NaN 16910 3894 20805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20807 84.424 NaN 606980 35 0 39488 0.261 + 513 ANYNVAIIDW 10 93 589.7960235811606 1177.5774942291212 2 589.2908935546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _ANYNVAIIDW_ REV__ENSG00000265817|ENST00000481490|FSBP 34.40172386719151 0.19398797222092762 1 {I|L}T{I|L}W 4 -1 44.073 0 0 3.7427 0 0 646.2700672834 0 646.2700672834 0 13.098112475265378 0 0 0 1.610924374808178 0 0.3807196863200844 0 {I|L}T{I|L}W 3.7427 - 993 NaN NaN 184200.9 NaN 16911 3894 20805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20809 84.429 NaN 549390 35 0 84450 0.327 + 15343 LPDDFIDSL 9 75 517.7550870980759 1033.4956212629518 2 517.7552490234375 MULTI HCD FTMS 0 0 0 20808 219670.796875 0.41226123538340687 1 -0.0091400146484375 1 Unmodified _LPDDFIDSL_ ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF;NLN|p.E232Kfs*12|1|0.67|ENSG00000123213|chr5:65781293-65781293|G/-|frameshift_variant 52.268347100219714 0.028397529699942435 1 W{I|L}DS{I|L} 5 5 51.454 0 0 4.9786 0 0 401.16978652168126 0 401.16978652168126 0 20.94183267658524 0 0 0 1.274227503252014 0 0.4247425010840047 0 W{I|L}DS{I|L} 4.9786 - 267 NaN NaN 160969.1 NaN 16912 3895 20808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20810 84.434 NaN 673210 35 0 121510 0.261 + 10515 IPEPIDPLF 9 68 520.7865196612423 1039.5584863892846 2 520.784912109375 MULTI HCD FTMS 0 0 0 20808 261616.828125 0.26597267931747476 11 -0.15547943115234375 2 Unmodified _IPEPIDPLF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant 32.30548876998284 0.10066689432505688 1 DP{I|L}{M(Oxidation (M))|F} 4 5 47.735 0 0 4.5919 0 0 549.3154180471307 0 549.3154180471307 0 35.74539712336197 0 0 0 1.4247425010840047 0 0.3054621874040891 0 + DP{I|L}{M(Oxidation (M))|F} 4.5919 + + 131 NaN NaN 197558.4 NaN 16913 3895 20808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20812 84.438 NaN 348370 35 0 33557 0.411 + 13538 KYPENFFLL 9 84 585.8129760976635 NaN 0 585.812744140625 PEAK HCD FTMS 0 0 0 20811 178047.984375 0.41261242034221957 9 -0.136993408203125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.010655072594219328 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 4 7 47.744 0 0 4.082 0 0 131.09358406029747 514.2308623340315 645.324446394329 0 0 0 0 0 1.6307196863200843 0 0 1.372363747448347 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 4.082 - 412 + NaN NaN 211630.3 NaN 16914 3896 20811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20814 84.445 NaN 5456500 35 0 615850 0.327 -1 0 117 582.8051436978249 1163.5957344624496 2 582.8053588867188 MULTI HCD FTMS 0 0 0 20813 4726650 0.8404887002623277 -2 0.01638031005859375 1 NaN NaN 1 G{I|L}T{I|L}VNQSW 9 -1 101.44 0 0 8.718 0 0 147.07808011384458 0 147.07808011384458 0 74.46395015176066 0 0 0 2.2302046884880937 0 1.524227503252014 1.9361818737241734 G{I|L}T{I|L}VNQSW 8.718 - 4734 + NaN NaN 781263.6 NaN 16915 3897 20813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20815 84.45 NaN 905140 35 0 211100 0.261 + 28536 TPQFPDMIL 9 84 531.2701063807082 1060.5256598282162 2 531.2708740234375 MULTI HCD FTMS 0 0 0 20813 595728 0.21876913899000208 17 -0.28685760498046875 2 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 21.536976647645854 0.1742816388551942 1 C[DP]M{I|L}{I|L} 6 4 37.893 0 0 3.573 0 0 370.21992690254064 0 370.21992690254064 0 16.69679337952018 0 0 0 1 0 0.4247425010840047 0 C[DP]M{I|L}{I|L} 3.573 - 358 NaN NaN 210256.6 NaN 16916 3897 20813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20816 84.453 NaN 752560 35 0 39247 0.262 + 16544 LTRRRSCSPC 10 98 589.7960235811606 1177.5774942291212 2 589.79443359375 MULTI HCD FTMS 0 0 0 20813 520317.1875 0.9464303639864493 -4 0.03176116943359375 3 Unmodified _LTRRRSCSPC_ ENST00000373064.9_3_9:130863495-130864671:+|nuORF;ENST00000373066.9_1_9:130863495-130864671:+|nuORF 39.94969957227396 0.1458432724694501 1 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}T{I|L}W 7 9 53.025 0 0 4.5029 0 0 273.0238908199687 0 273.0238908199687 0 15.573193899842437 0 0 0 1.9247425010840047 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}T{I|L}W 4.5029 - 3111 + NaN NaN 201187.2 NaN 16917 3897 20813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20817 84.457 NaN 263180 35 0 47234 0.261 + 18367 MPLSEDFVWM 10 58 635.7773090412146 1269.5400651492291 2 635.7777099609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 49.93300154707207 0.07803319134556608 1 D{M(Oxidation (M))|F}VW{M(Oxidation (M))|F} 5 5 57.875 0 0 4.5588 0 0 557.2513905255875 0 557.2513905255875 0 32.825834421237516 0 0 0 1.3807196863200843 0 0.8494850021680094 0 + D{M(Oxidation (M))|F}VW{M(Oxidation (M))|F} 4.5588 + + 161 NaN NaN 124462.9 NaN 16918 3897 20813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20819 84.461 NaN 738560 35 0 35749 0.411 + 18524 MSVVNVGSSLW 11 123 589.7960235811606 1177.5774942291212 2 589.7959594726562 MULTI HCD FTMS 0 0 0 20818 397977.78125 0.723901238351764 -3 0.03214263916015625 1 Unmodified _MSVVNVGSSLW_ ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant 47.594388314883695 0.09129669622414652 1 {[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))R]Q{I|L}T{I|L}W 9 8 + 62.629 0 0 5.3184 5.3184 81.994 0 0 0 0.25122957060953865 0.25122957060953865 0.25122957060953865 0.25122957060953865 0 2.5 0 0.6237125054200234 0.5941876774005248 {[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))R]Q{I|L}T{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}TQQAT{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}S{[NV]|[RG]}Q{I|L}T{I|L}W;[{I|L}T]{[MS]|[{M(Oxidation (M))|F}A]}QQAT{I|L}W;{[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))R][AG]{I|L}T{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}TAQQD{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[WE]{I|L}D{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}D{I|L}[WE]{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}TQQTA{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}S{[NV]|[RG]}[AG]{I|L}T{I|L}W 5.3184;5.2971;4.7253;4.6076;4.5365;4.3643;4.041;4.041;4.0233;3.947 -;-;-;-;-;-;-;-;-;- 4615 NaN NaN 326163.4 NaN 16919 3898 20818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20821 84.469 NaN 1620600 35 0 345860 0.411 + 29007 TYEAQFFGF 9 119 555.2505716493226 1108.4865903654452 2 555.2516479492188 MULTI HCD FTMS 0 0 0 20820 1341576.625 0.46370661715445394 15 -0.2637176513671875 1 Unmodified _TYEAQFFGF_ ENSG00000167842|ENST00000611091|MIS12;MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant 205.7785088242617 1.0412822304099307E-17 1 [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 135.05 0 0 12.183 12.183 97.489 0 0 0 22.931052042036768 108.26952538107156 22.931052042036768 20.757659435244733 0 3.1989700043360187 1.5228787452803376 2.4674165578762484 1.1549471895720984 + + [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[CP]|[EA]}[YT]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[CP]|[EA]}Q[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[CP]|[EA]}[YT][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[CP]|[EA]}[AG][YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EA[TP]A[NG]G{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}G{M(Oxidation (M))|F}EA{[MG]|[TS]}G{M(Oxidation (M))|F} 12.183;10.31;8.0475;7.7675;6.7191;6.5799;5.8949;4.8465;4.4062;3.4005 +;-;-;-;-;-;-;-;-;- + 1088 NaN NaN 564325.3 NaN 16920 3899 20820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20823 84.476 NaN 1131300 35 0 235650 0.327 -1 0 87 562.3440213297208 1122.6734897262415 2 562.3441162109375 MULTI HCD FTMS 0 0 0 20822 431779.5625 0.5002917686058428 1 -0.01908111572265625 1 NaN NaN 1 {I|L}Q[EC]{M(Oxidation (M))|F}Q{I|L}{I|L} 8 -1 42.778 0 0 3.8104 0 0 130.17582234518528 0 130.17582234518528 0 22.703905713083046 0 0 0 0 0 0.3252574989159953 1.4119543704721593 {I|L}Q[EC]{M(Oxidation (M))|F}Q{I|L}{I|L} 3.8104 - 760 + NaN NaN 259209.7 NaN 16921 3900 20822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20824 84.48 NaN 472810 35 0 65228 0.261 + 4965 FATLVDVVV 9 54 481.7814881976743 961.5484234621487 2 481.781494140625 MULTI HCD FTMS 0 0 0 20822 622171 0.8474828411034374 5 -0.09932708740234375 2 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 48.345845343767074 0.03388484103555672 1 DVVV 4 5 54.24 0 0 5.6409 0 0 531.3053253511468 0 531.3053253511468 0 32.07325943207756 0 0 0 1.4247425010840047 0 0.805462187404089 0 + DVVV 5.6409 + + 99 NaN NaN 150104 NaN 16922 3900 20822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20825 84.484 NaN 432990 35 0 47428 0.261 + -1 LTLCNSNVQQ 10 89 588.7868773770406 NaN 0 588.7858276367188 PEAK HCD FTMS 0 0 0 20822 304481.65625 0.5608600302827402 7 -0.1311492919921875 3 Carbamidomethyl (C) _LTLC(Carbamidomethyl (C))NSNVQQ_ REV__DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;REV__ENSG00000137628|ENST00000393743|DDX60 31.26834338654808 0.18935648939382782 1 T{[DS]|[MA]|[CV]|TT}K 4 -1 20.177 0 0 1.7164 0 0 113.08248723354139 628.2357882135374 741.3182754470788 0 0 0 0 0 0.8494850021680094 0 0.5 0.5 T{[DS]|[MA]|[CV]|TT}K 1.7164 - 145 + NaN NaN 144101 NaN 16923 3900 20822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20826 84.487 NaN 673640 35 0 89996 0.261 + 21513 PYISNIYLI 9 71 548.3079661776204 1094.6013794220407 2 548.3084716796875 MULTI HCD FTMS 0 0 0 20822 246199.171875 0.160676325525 -7 0.06218719482421875 4 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 71.92227651296345 0.008466197542043549 1 [Y{I|L}]SPN{I|L}Y{I|L}{I|L} 9 2 + 82.643 0 0 7.5501 7.5501 87.021 0 0 0 8.253800256993955 16.478174818886373 8.253800256993955 2.5134875797167666 0 1.3494850021680094 1.3979400086720375 0.3807196863200844 0.6747425010840047 [Y{I|L}]SPN{I|L}Y{I|L}{I|L};[Y{I|L}]PSN{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SN{I|L}Y{I|L}{I|L};[Y{I|L}]SPVQY{I|L}{I|L};[Y{I|L}]PSVQY{I|L}{I|L};[Y{I|L}]SPNY{I|L}{I|L}{I|L};[Y{I|L}]SPGG{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SVQY{I|L}{I|L};[Y{I|L}]PSNY{I|L}{I|L}{I|L};[Y{I|L}]PSGG{I|L}Y{I|L}{I|L} 7.5501;7.3204;6.796;6.665;6.4354;6.1354;6.0924;5.9109;5.9058;5.8628 -;-;+;-;-;-;-;-;-;- + 1759 NaN NaN 199100.6 NaN 16924 3900 20822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20827 84.49 NaN 229400 35 0 35472 0.261 + 26943 SYLEVLLKL 9 62 539.3308643832837 1076.6471758333673 2 539.3308715820312 MULTI HCD FTMS 0 0 0 20822 64161.04296875 0.23201405303469905 1 -0.01908111572265625 5 Unmodified _SYLEVLLKL_ ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6;nc|ENSG00000143870|Q15084-3|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6 27.628801355627647 0.12213550946336599 1 V{I|L}{I|L}K{I|L} 5 4 39.068 0 0 3.6287 0 0 492.2223377912125 0 492.2223377912125 0 22.870156338638594 0 0 0 0.3494850021680094 0 0 0 + V{I|L}{I|L}K{I|L} 3.6287 + + 46 NaN NaN 119740.2 NaN 16925 3900 20822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20829 84.495 NaN 1296000 35 0 39986 0.327 + 12190 KKNQHTKIH 9 131 567.3307443934895 1132.6469358537788 2 567.3307495117188 MULTI HCD FTMS 0 0 0 20828 1039946.375 0.6961974778945903 9 -0.16333770751953125 1 Unmodified _KKNQHTKIH_ REV__ENSG00000172845|ENST00000310015|SP3;REV__ENSG00000185591|ENST00000327443|SP1;REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF;REV__nc|ENSG00000172845|Q02447-2|SP3;REV__nc|ENSG00000172845|Q02447-3|SP3;REV__nc|ENSG00000172845|Q02447-4|SP3;REV__nc|ENSG00000172845|Q02447-5|SP3;REV__nc|ENSG00000172845|Q02447-6|SP3;REV__nc|ENSG00000185591|P08047-2|SP1;REV__nc|ENSG00000185591|P08047-3|SP1 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 15.573 0 0 1.3749 0 0 558.4377816563164 0 558.4377816563164 0 3.790556390867245 0 0 0 0 0 0.25 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.3749 - 911 + NaN NaN 286533.9 NaN 16926 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20830 84.5 NaN 1098700 35 0 221000 0.261 + 1310 AYNEGIINLL 10 78 560.3064908613964 1118.5984287895926 2 560.3075561523438 MULTI HCD FTMS 0 0 0 20828 729711.1875 0.5652784652890104 6 -0.11206817626953125 2 Unmodified _AYNEGIINLL_ ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant 75.5705956163825 0.010984675281887875 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}C(Carbamidomethyl (C)){I|L}{I|L}N{I|L} 8 5 68.677 0 0 6.1396 0 0 0 128.07121410994105 128.07121410994105 52.447434950768695 0 0 0 0 1.6549471895720984 1.6989700043360187 0 1.274227503252014 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}C(Carbamidomethyl (C)){I|L}{I|L}N{I|L} 6.1396 - 622 NaN NaN 243158.4 NaN 16927 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20831 84.503 NaN 511570 35 0 164920 0.261 + 2785 DYFVDFEWP 9 51 609.2616577148438 NaN 0 609.2616577148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _DYFVDFEWP_ REV__ENSG00000111701|ENST00000229304|APOBEC1 1.844237919475145 0.28630992268396543 1 A 1 -1 1.9897 0 0 0.16356 0 0 115.02602438137576 1027.431072764226 1142.4570971456017 0 0 0 0 0 0 0 0 0 A 0.16356 - 1 + NaN NaN 163734.6 NaN 16928 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20832 84.506 NaN 168290 35 0 17647 0.261 + 15160 LMSLIINTF 9 50 534.2940624712198 1066.5735720092396 2 534.2944946289062 MULTI HCD FTMS 0 0 0 20828 86709.546875 0.35653587414271326 1 -0.02591705322265625 4 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 51.629811660486645 0.02929079705179888 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L} + + 48.704 -1.6992 -0.29639 4.5664 4.5664 60.862 0 0 0 0 40.54358482999213 0 0 0 1.805462187404089 0 0.7742275032520141 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}NT{M(Oxidation (M))|F} 4.5664 + + 115 + NaN NaN 103032.5 NaN 16929 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20833 84.51 NaN 98247 35 0 7656.7 0.261 + 31046 VSSYPYLAI 9 45 506.7713172851282 NaN 0 506.7716064453125 PEAK HCD FTMS 0 0 0 20828 41015.9140625 0.220005278413251 1 -0.02591705322265625 5 Unmodified _VSSYPYLAI_ REV__ENSG00000198399|ENST00000355123|ITSN2;REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2;REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2;REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2 11.640296217721598 0.23883959125015683 1 A 1 -1 11.99 0 0 1.1853 0 0 131.0885993321462 806.3718665012173 937.4604658333635 0 0 0 0 0 0.5 0 0 0 A 1.1853 + + 3 + NaN NaN 96791.5 NaN 16930 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20834 84.513 NaN 53386 35 0 6420.4 0.261 -1 CGDFSDEDDCE 11 38 646.1897583007812 NaN 0 646.1897583007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))GDFSDEDDCE_ ENSG00000113600|ENST00000263408|C9 0 0.34212014346876374 1 M 1 -1 6.9897 0 0 0.54168 0 0 681.0113616193374 475.29172693424067 1156.3030885535782 0 0 0 0 0 0 0 0 0 M 0.54168 - 5 + NaN NaN 85962.9 NaN 16931 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20835 84.516 NaN 320940 35 0 26199 0.261 -1 MLIIVCFIF 9 79 578.3198545907783 NaN 0 578.3197631835938 PEAK HCD FTMS 0 0 0 20828 126516.828125 0.8562085580282245 -5 0.0567474365234375 7 Carbamidomethyl (C) _MLIIVC(Carbamidomethyl (C))FIF_ ENSG00000053501|ENST00000263897|USE1;ENST00000600970.5_1_19:17327144-17330619:+|nuORF 14.581692164780916 0.22376707489839515 1 GVHY[{I|L}V]VG 8 -1 15.214 0 0 1.3177 0 0 165.1404283204252 162.02300440006096 327.1634327204862 0 0 0 0 0 0 0 0 0 GVHY[{I|L}V]VG 1.3177 - 194 + NaN NaN 132435.2 NaN 16932 3901 20828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20837 84.521 NaN 2013600 35 0 89670 0.327 + 16427 LSLTLVNSSR 10 126 545.3168208601961 1088.6190887871921 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20836 3394800 0.9416690423597813 -12 0.13912200927734375 1 Unmodified _LSLTLVNSSR_ REV__ENSG00000106346|ENST00000306177|USP42;REV__ENST00000479544.6_1_7:6150764-6196715:+|nuORF;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;REV__nc|ENSG00000106346|Q9H9J4|USP42 8.745405648335112 0.42901288225909884 1 KN 2 -1 12.307 0 0 1.1305 0 0 828.4384692297011 0 828.4384692297011 0 2.575156255085391 0 0 0 0 0 0 0 KN 1.1305 - 427 NaN NaN 384043.6 NaN 16933 3902 20836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20838 84.525 NaN 588580 35 0 93049 0.261 + 26543 SVMLELVAL 9 52 495.78043293069106 989.5463129281821 2 495.7807922363281 MULTI HCD FTMS 0 0 0 20836 404195.3125 0.7673996831496788 1 -0.01922607421875 2 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 81.61307344734483 0.005330412723537057 1 {I|L}E{I|L}VA{I|L} 6 3 76.732 0 0 7.7542 0 0 333.1354356195977 0 333.1354356195977 0 54.3360688456422 0 0 0 2.2302046884880937 0 1.6549471895720984 0 + {I|L}E{I|L}VA{I|L} 7.7542 + + 134 NaN NaN 174960.1 NaN 16934 3902 20836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20839 84.529 NaN 458620 35 0 13372 0.261 -1 LRLCKAWV 8 95 523.3029341237319 1044.5913153142637 2 523.3028564453125 MULTI HCD FTMS 0 0 0 20836 283228.71875 0.48683648638791216 9 -0.1600494384765625 3 Carbamidomethyl (C) _LRLC(Carbamidomethyl (C))KAWV_ ENST00000332065.9_1_17:74078001-74078805:-|nuORF 9.347437153973935 0.5250182646323369 1 Q 1 -1 9.4897 0 0 0.90846 0 0 502.2991533043012 411.22309290103755 913.5222462053388 0 0 0 0 0 0.75 0 0 0 Q 0.90846 - 330 + NaN NaN 150135.7 NaN 16935 3902 20836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20840 84.532 NaN 392060 35 0 29745 0.261 + 19249 NLAILAFFGF 10 79 556.8090613300621 NaN 0 556.8091430664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NLAILAFFGF_ ENSG00000119899|ENST00000355773|SLC17A5;nc|ENSG00000119899|Q9NRA2-2|SLC17A5 7.910154910731844 0.33341429274560913 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G 6 8 11.203 0 0 1.0078 0 0 224.2132631857117 162.05605493717033 386.26931812288205 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G 1.0078 - 271 + NaN NaN 146461.4 NaN 16936 3902 20836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20841 84.536 NaN 458330 35 0 27585 0.261 + 19777 NYAWVYYHL 9 77 614.7943040834457 1227.5740552336913 2 615.2960205078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 66.45667989310934 0.010234776021261575 1 [YN]AWVYYH{I|L} 9 0 + 79.143 0 0 6.4471 6.4471 91.476 0 0 0 27.153500133247732 16.478174818886373 16.478174818886373 17.69361325895963 0 2.024227503252014 1.6989700043360187 0 0.6382104921644451 + + [YN]AWVYYH{I|L};[YN]A[C(Carbamidomethyl (C))R]{I|L}T{I|L}A{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWV[VG][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L};[YN]A[C(Carbamidomethyl (C))R]{I|L}T{[MS]|[{M(Oxidation (M))|F}A]}{I|L};[YN]A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[VG]A[WY];[YN]AWV[PG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 6.4471;5.0058;4.8264;4.6643;4.4479;4.2352;4.1739;4.0548 +;-;-;-;-;-;-;- + 387 NaN NaN 159361.5 NaN 16937 3902 20836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20843 84.54 NaN 1187500 35 0 280620 0.327 + 16856 LYEQAFQLL 9 73 562.8034341499896 1123.592315366779 2 562.8036499023438 MULTI HCD FTMS 0 0 0 20842 642536.875 0.5040412670399561 8 -0.1408233642578125 1 Unmodified _LYEQAFQLL_ ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD 79.59630418116434 0.005983006570063981 1 [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L} 9 0 + 93.655 0 0 8.3353 8.3353 92.02 0 0 0 16.46591250700361 16.478174818886373 16.46591250700361 9.208187539523749 0 2.3494850021680094 1.5228787452803376 0.3494850021680094 0.7614393726401688 + + [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]EQA{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}[AG]{I|L}{I|L} 8.3353;7.5158;7.177;6.8699;6.0503;6.0225 +;-;-;-;-;- + 359 NaN NaN 257118.8 NaN 16938 3903 20842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20844 84.545 NaN 280240 35 0 30344 0.261 + 21584 PYNDYFEYF 9 57 629.2591136157014 NaN 0 629.25732421875 PEAK HCD FTMS 0 0 0 20842 40070.55078125 0.1735005367017247 5 -0.08289337158203125 2 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 22.736283301280096 0.1690317064107932 1 YE 2 7 19.776 0 0 1.5739 0 0 165.0789831624291 796.2963867206108 961.3753698830399 0 0 0 0 0 0.8807196863200843 0 0 0 YE 1.5739 - 24 + NaN NaN 128572.8 NaN 16939 3903 20842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20846 84.549 NaN 1435800 35 0 62258 0.326 -1 0 118 553.8301034429838 1105.6456539527676 2 553.8303833007812 MULTI HCD FTMS 0 0 0 20845 1214170.125 0.5895450293271516 5 -0.096160888671875 1 NaN NaN 1 Q 1 -1 8.3718 0 0 0.75719 0 0 607.3789791474545 367.1966657401041 974.5756448875586 0 0 0 0 0 0.28872548999643577 0 0 0 Q 0.75719 - 162 + NaN NaN 299900.6 NaN 16940 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20847 84.554 NaN 503440 35 0 133840 0.264 + 16533 LTNNDSSS 8 47 419.18308180018954 836.3516106671791 2 419.1834716796875 MULTI HCD FTMS 0 0 0 20845 928309.25 0.6466141990061967 -3 0.054473876953125 2 Unmodified _LTNNDSSS_ REV__ENSG00000144847|ENST00000393775|IGSF11;REV__nc|ENSG00000144847|Q5DX21-2|IGSF11;REV__nc|ENSG00000144847|Q5DX21-3|IGSF11 2.577480529830294 0.5381683276125971 1 W 1 -1 16.99 0 0 2.0314 0 0 632.2617039062401 0 632.2617039062401 0 5.536049848239344 0 0 0 0 0 0 0 W 2.0314 - 23 + NaN NaN 157035.9 NaN 16941 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20848 84.557 NaN 687280 35 0 38584 0.261 + 30230 VINPHKMKAL 10 113 575.8416492574281 1149.6687455816561 2 575.8418579101562 MULTI HCD FTMS 0 0 0 20845 453084.6875 0.493150147240525 1 -0.0257720947265625 3 Unmodified _VINPHKMKAL_ REV__ENSG00000136098|ENST00000610828|NEK3;REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF;REV__nc|ENSG00000136098|P51956-2|NEK3 3.5964929083625545 0.45626689593999237 1 {M(Oxidation (M))|F}{I|L}GE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 13.365 0 0 1.1625 0 0 391.3372158959124 0 391.3372158959124 0 1.938200260161123 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}GE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.1625 - 112 + NaN NaN 182207.8 NaN 16942 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20849 84.561 NaN 1668000 35 0 216310 0.261 + 22768 QYILFPLRF 9 105 598.8448885976039 1195.6752242620078 2 598.844970703125 MULTI HCD FTMS 0 0 0 20845 670414.8125 0.07768266203933571 27 -0.6265640258789062 4 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 99.79894945604345 0.0042691968066200965 1 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 66.248 0 0 5.5406 5.5406 85.297 0 0 0 5.762495684687735 5.762495684687735 5.762495684687735 6.689615513722195 0 2.504432191740108 1.3010299956639813 0 1.8684151806525389 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}PR{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}S{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}TV{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}Y[{I|L}V]R{M(Oxidation (M))|F} 5.5406;4.9811;4.4726;4.3704;4.2576;3.95;3.837;3.793;3.7075;3.4935 +;-;-;-;-;-;-;-;-;- + 4317 NaN NaN 332689.3 NaN 16943 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20850 84.564 NaN 487190 35 0 73012 0.261 + 30742 VPKRHPCLL 9 75 531.8164908512217 1061.6184287692433 2 531.8168334960938 MULTI HCD FTMS 0 0 0 20845 50979.12109375 0.15430448656618076 4 -0.0735626220703125 5 Unmodified _VPKRHPCLL_ ENST00000392615.9_1_17:72733144-72739442:+|nuORF;ENST00000528438.5_2_17:72732794-72739442:+|nuORF 5.230669730166228 0.3113646817964458 1 W 1 9 13.979 0 0 1.3168 0 0 857.5287814077184 0 857.5287814077184 0 6.505149978319906 0 0 0 0 0 0 0 W 1.3168 - 100 + NaN NaN 157902.2 NaN 16944 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20851 84.567 NaN 535500 35 0 133210 0.261 + 25911 SNWTSNFII 9 48 541.269511347607 1080.524469762014 2 541.7713012695312 MULTI HCD FTMS 0 0 0 20845 210598.3125 0.7813458219193885 -6 0.08821868896484375 6 Unmodified _SNWTSNFII_ ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.35 0 0 689.277452289293 0 689.277452289293 0 18.239087409443187 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.35 + + 57 NaN NaN 160020.6 NaN 16945 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20852 84.571 NaN 462370 35 0 29698 0.261 + 19778 NYAWVYYHL 9 87 614.7943040834457 1227.5740552336913 2 615.2954711914062 MULTI HCD FTMS 0 0 0 20845 103901.3515625 0.6422092673331278 1 -0.0257720947265625 7 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 53.832793166522166 0.026208976789938845 1 [YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L} 10 4 + 56.642 0 0 4.6141 4.6141 83.964 0 0 0 6.8791654952092784 38.81559999683282 6.8791654952092784 7.257724967479859 0 1.25 1.6989700043360187 0 0.6237125054200234 [YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWV[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVYYH{I|L};[YN]A[{M(Oxidation (M))|F}V]V[MT]H{M(Oxidation (M))|F};[YN][{I|L}P]W[YN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][NP]W[YN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.6141;4.0229;3.6575;2.9641;1.0853;1.0427 -;-;+;-;-;- + 321 NaN NaN 149687.7 NaN 16946 3904 20845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20854 84.575 NaN 335770 35 0 36471 0.327 -1 0 61 585.8127137264215 1169.610874519643 2 585.81298828125 MULTI HCD FTMS 0 0 0 20853 243883.6875 0.5236136724856788 -2 0.03510284423828125 1 NaN NaN 1 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 43.175 0 0 3.6914 0 0 650.2699452130875 0 650.2699452130875 0 19.987737688117235 0 0 0 0.9247425010840047 0 0 0.3494850021680094 K{M(Oxidation (M))|F}{I|L}{I|L} 3.6914 - 325 NaN NaN 133002.2 NaN 16947 3905 20853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20855 84.58 NaN 328870 35 0 42599 0.261 + 30204 VIDEDGGDEYF 11 53 629.761078599518 NaN 0 629.76123046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VIDEDGGDEYF_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF;REV__ENST00000487086.1_1_20:1438843-1447469:-|nuORF;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 3.2813086475875832 0.3328120158028032 1 YE{M(Oxidation (M))|F} 3 -1 13.812 0 0 1.0984 0 0 166.08565346315737 649.2269944188143 815.3126478819718 0 0 0 0 0 0 0 0 0 YE{M(Oxidation (M))|F} 1.0984 - 32 + NaN NaN 128997.4 NaN 16948 3905 20853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20857 84.585 NaN 2762500 35 0 305110 0.327 -1 0 87 582.8051436978249 1163.5957344624496 2 582.8052368164062 MULTI HCD FTMS 0 0 0 20856 1828925.5 0.3252179062066427 7 -0.13175201416015625 1 NaN NaN 1 {I|L}T{I|L}VN{[QS]|[NT]}W 8 -1 79.148 0 0 6.802 0 0 204.08804564378755 0 204.08804564378755 0 38.894323136107204 0 0 0 2.2614393726401687 0 1.4802046884880937 1.5356668758921828 {I|L}T{I|L}VN{[QS]|[NT]}W 6.802 - 1417 + NaN NaN 450151.6 NaN 16949 3906 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20858 84.589 NaN 279130 35 0 54072 0.261 + 18368 MPLSEDFVWM 10 57 635.7773090412146 1269.5400651492291 2 635.7780151367188 MULTI HCD FTMS 0 0 0 20856 97104.4609375 0.34134920225153575 1 -0.0224761962890625 2 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 41.8396318013385 0.12944265636084 1 D{M(Oxidation (M))|F}VW{M(Oxidation (M))|F} 5 5 53.488 0 0 4.2132 0 0 557.2526112287125 0 557.2526112287125 0 37.034021960761265 0 0 0 1.5 0 0.805462187404089 0 + D{M(Oxidation (M))|F}VW{M(Oxidation (M))|F} 4.2132 + + 68 NaN NaN 120974.1 NaN 16950 3906 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20859 84.592 NaN 331600 35 0 71519 0.262 + 28537 TPQFPDMIL 9 71 531.2701063807082 1060.5256598282162 2 531.2708740234375 MULTI HCD FTMS 0 0 0 20856 152996.90625 0.056185039898152454 26 -0.620880126953125 3 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 13.042465956692817 0.2476723265019929 1 {I|L}{I|L} 2 7 25.969 0 0 2.4487 0 0 816.3469149794836 0 816.3469149794836 0 13.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.4487 + + 79 NaN NaN 134864.6 NaN 16951 3906 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20860 84.596 NaN 438210 35 0 46683 0.261 + 3983 EREPQQTLW 9 87 593.7964394356845 1185.578325938169 2 593.797119140625 MULTI HCD FTMS 0 0 0 20856 213124.84375 0.3418277593815499 6 -0.1090850830078125 4 Unmodified _EREPQQTLW_ REV__ENSG00000135686|ENST00000564996|KLHL36;REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36 46.020951573049366 0.037705236580089195 1 T{I|L}VNQSW 7 -1 61.959 0 0 5.226 0 0 339.1557789533219 0 339.1557789533219 0 36.37521788131948 0 0 0 0.6694451763165201 0 0.6203715150305281 0.8494850021680094 T{I|L}VNQSW 5.226 - 677 NaN NaN 149933.5 NaN 16952 3906 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20861 84.599 NaN 371140 35 0 33191 0.261 + 32809 WTINNFSF 8 60 514.7451363464885 1027.475719759777 2 514.745361328125 MULTI HCD FTMS 0 0 0 20856 157350.578125 0.3294787518983467 -4 0.0636749267578125 5 Unmodified _WTINNFSF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 107.99703571036002 0.036978982887966305 1 {[WT]|[RM]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 0 + 72.727 0 0 7.0782 7.0782 94.908 0 0 0 9.731975075880328 55.94335023848103 9.731975075880328 54.694415168261585 0 1.9247425010840047 0 1.5356668758921828 1.1747425010840047 + + {[WT]|[RM]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[KA][W{M(Oxidation (M))|F}]{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[KS]D{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}C{[QV]|[N{I|L}]|[RA]|[KV]}{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F} 7.0782;1.755;1.7225;1.6009 +;-;-;- + 168 NaN NaN 149926.7 NaN 16953 3906 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20862 84.602 NaN 758240 35 0 94208 0.261 + 22665 QWPELLLRF 9 74 601.3395569908441 1200.6645610484882 2 601.8414306640625 MULTI HCD FTMS 0 0 0 20856 75893.6484375 0.21506412126848506 -8 0.1233367919921875 6 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 57.72198328787511 0.020768266150574023 1 [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 9 0 + 50.128 0 0 4.1751 4.1751 89.77 0 0 0 28.67477160170118 9.137342758552691 9.137342758552691 50.128421796822025 0 1.079689690656103 1.3010299956639813 0 0 + + [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 4.1751 + + 189 + NaN NaN 206167.1 NaN 16954 3906 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20864 84.607 NaN 844020 35 0 357400 0.327 + 817 AVKSRRPGPR 10 81 562.3440213297208 1122.6734897262415 2 562.344482421875 MULTI HCD FTMS 0 0 0 20863 114997.4375 0.1332445451074699 8 -0.14800262451171875 1 Unmodified _AVKSRRPGPR_ REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}Q[EC]{M(Oxidation (M))|F}Q{I|L}{I|L} 8 -1 29.213 0 0 2.6021 0 0 130.17533406393528 0 130.17533406393528 0 23.728721920568248 0 0 0 0 0 0 0.3807196863200844 {I|L}Q[EC]{M(Oxidation (M))|F}Q{I|L}{I|L} 2.6021 - 768 + NaN NaN 211579.2 NaN 16955 3907 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20865 84.612 NaN 497960 35 0 123310 0.261 + 35691 YYLDAVVSF 9 51 538.7685395922941 1075.5225262513882 2 538.7693481445312 MULTI HCD FTMS 0 0 0 20863 199218.859375 0.3021535741264543 -7 0.1311492919921875 2 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 43.85829265575387 0.04763305254408404 1 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 9 5 + 70.824 0 0 6.5851 6.5851 94.352 0 0 0 17.359127507448342 42.77696854845523 17.359127507448342 70.82441255669814 0 1.8494850021680094 1.5228787452803376 0.4247425010840047 0 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 6.5851 - 105 NaN NaN 155372.8 NaN 16956 3907 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20866 84.615 NaN 124150 35 0 17164 0.261 + 32447 WDELLVLL 8 30 500.789971367368 999.5653898015361 2 501.29168701171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WDELLVLL_ REV__ENSG00000130812|ENST00000253109|ANGPTL6 8.593279151180031 0.5292430274356741 1 V{I|L}{I|L} 3 -1 31.198 0 0 3.1211 0 0 656.320604392775 0 656.320604392775 0 25.713337517843655 0 0 0 0.5 0 0 0 V{I|L}{I|L} 3.1211 + + 7 NaN NaN 120819.9 NaN 16957 3907 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20867 84.618 NaN 78948 35 0 12384 0.261 -1 PQMLAMMV 8 44 468.7231147902272 NaN 0 468.7230529785156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _PQM(Oxidation (M))LAMMV_ ENSG00000065150|ENST00000651721|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103226.3 NaN 16958 3907 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20869 84.623 NaN 1799700 35 0 293930 0.327 + 21514 PYISNIYLI 9 80 548.3079661776204 1094.6013794220407 2 548.3082275390625 MULTI HCD FTMS 0 0 0 20868 1254005.5 0.8183983495705671 1 -0.0225982666015625 1 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 88.95385435242217 0.004553379958619559 1 [Y{I|L}]SPN{I|L}Y{I|L}{I|L} 9 2 + 98.349 0 0 8.9849 8.9849 88.745 0 0 0 11.148933515261632 16.478174818886387 11.148933515261632 1.4485657490360637 0 1.805462187404089 1.5228787452803376 0.5891368308784531 1.1549471895720984 [Y{I|L}]SPN{I|L}Y{I|L}{I|L};[Y{I|L}]PSN{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SN{I|L}Y{I|L}{I|L};[Y{I|L}]SPNY{I|L}{I|L}{I|L};[Y{I|L}]PSNY{I|L}{I|L}{I|L};[Y{I|L}]SPGG{I|L}Y{I|L}{I|L};[Y{I|L}]PSGG{I|L}Y{I|L}{I|L};[Y{I|L}]S{I|L}NPY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}T{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SNY{I|L}{I|L}{I|L} 8.9849;8.8526;7.9664;7.368;7.2357;7.0885;6.9562;6.9154;6.3572;6.3495 -;-;+;-;-;-;-;-;-;- + 1409 NaN NaN 363947.6 NaN 16959 3908 20868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20870 84.628 NaN 1126900 35 0 35474 0.261 -1 0 116 567.3307443934895 1132.6469358537788 2 567.3311767578125 MULTI HCD FTMS 0 0 0 20868 1257814.125 0.8420501696399403 16 -0.3499908447265625 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1914 0 0 967.5681069736992 0 967.5681069736992 0 1.5308998699194376 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1914 - 478 + NaN NaN 264688.7 NaN 16960 3908 20868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20871 84.631 NaN 363310 35 0 54365 0.261 -1 EMSTQKIVGM 10 81 578.2724265297281 1154.5303001262562 2 578.272705078125 MULTI HCD FTMS 0 0 0 20868 213337.78125 0.5884767731365035 -9 0.1544036865234375 3 2 Oxidation (M) _EM(Oxidation (M))STQKIVGM(Oxidation (M))_ tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1 17.11289562659939 0.35104376501799556 1 {NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 10 -1 + 58.874 0 0 5.0994 5.0994 91.514 0 0 0 51.88424994129406 3.1728747786933553 3.1728747786933553 58.873949984654246 0 2 1.3979400086720375 0 0 {NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5.0994 - 228 + NaN NaN 136629.1 NaN 16961 3908 20868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20872 84.634 NaN 284110 35 0 37534 0.261 -1 LMLSTVKFY 9 68 559.2995092121762 1116.5844654911523 2 559.2992553710938 MULTI HCD FTMS 0 0 0 20868 199890.859375 0.986117063589946 1 -0.0225982666015625 4 Oxidation (M) _LM(Oxidation (M))LSTVKFY_ ENST00000433184.1_1_5:149340451-149341605:+|nuORF 34.40172386719151 0.0910440009062557 1 PY{I|L}S[YK]AY{I|L} 9 -1 + 58.59 0 0 5.2472 5.2472 83.973 0 0 0 21.462563968822515 3.8541526910186974 3.8541526910186974 4.744689683626646 0 1.9258337024346173 1.6989700043360187 0 0 PY{I|L}S[YK]AY{I|L};PY{I|L}S[KS]{I|L}[Y{M(Oxidation (M))|F}];PY{I|L}S[KS]{M(Oxidation (M))|F}Y{I|L};{I|L}{M(Oxidation (M))|F}{I|L}S[YK]AY{I|L};{I|L}{M(Oxidation (M))|F}{I|L}S[KS]{I|L}[Y{M(Oxidation (M))|F}];{I|L}{M(Oxidation (M))|F}{I|L}S[KS]{M(Oxidation (M))|F}Y{I|L};{I|L}[HD][YK]S{I|L}E{I|L};{[TV]|[{I|L}S]}[WH]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{I|L}{I|L};{I|L}[C(Carbamidomethyl (C))R][{M(Oxidation (M))|F}V]{I|L}[Y{M(Oxidation (M))|F}];{I|L}[C(Carbamidomethyl (C))R][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}Y{I|L} 5.2472;4.8223;4.7754;3.6823;3.2573;3.2104;2.0426;0.8756;0.82619;0.77928 -;-;-;-;-;-;-;-;-;- 792 + NaN NaN 130503.3 NaN 16962 3908 20868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20873 84.638 NaN 167330 35 0 20860 0.261 + 4966 FATLVDVVV 9 34 481.7814881976743 961.5484234621487 2 481.7815856933594 MULTI HCD FTMS 0 0 0 20868 23501.060546875 0.032011690614331956 13 -0.258453369140625 5 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 26.88365393820708 0.12808753336095696 1 DVVV 4 5 50.745 0 0 5.2775 0 0 531.3055504003465 0 531.3055504003465 0 50.74539712336197 0 0 0 1.5 0 0.3807196863200844 0 + DVVV 5.2775 + + 29 NaN NaN 124166.1 NaN 16963 3908 20868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20874 84.641 NaN 185430 35 0 43268 0.261 + -1 ISHDRPLLWP 10 43 638.3440880015509 1274.6736230699016 2 638.3453369140625 MULTI HCD FTMS 0 0 0 20868 29351.005859375 0.23718847036356877 -2 0.03844451904296875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ISHDRPLLWP_ REV__ENST00000445872.2_1_9:99488796-99488847:+|nuORF 10.073929032068715 0.4168838835836452 1 VAPE{I|L} 5 -1 42.959 0 0 3.3702 0 0 747.3643443595469 0 747.3643443595469 0 35.9471653193118 0 0 0 0.5 0 0 0 VAPE{I|L} 3.3702 - 25 NaN NaN 108572.7 NaN 16964 3908 20868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20876 84.646 NaN 260530 35 0 11291 0.327 + 18525 MSVVNVGSSLW 11 84 589.7960235811606 1177.5774942291212 2 589.7965087890625 MULTI HCD FTMS 0 0 0 20875 114259.03125 0.20783133660115077 8 -0.151519775390625 1 Unmodified _MSVVNVGSSLW_ ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant 24.990960013464015 0.23933535780272686 1 {M(Oxidation (M))|F}{I|L}T{I|L}W 5 8 46.498 0 0 3.9486 0 0 499.18962909415865 0 499.18962909415865 0 22.941453415473205 0 0 0 1.805462187404089 0 0 0 {M(Oxidation (M))|F}{I|L}T{I|L}W 3.9486 - 575 + NaN NaN 139361.3 NaN 16965 3909 20875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20877 84.65 NaN 235610 35 0 28117 0.261 + 19779 NYAWVYYHL 9 62 614.7943040834457 1227.5740552336913 2 614.2969970703125 MULTI HCD FTMS 0 0 0 20875 45156.16015625 0.3491646280063331 1 -0.01270294189453125 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 32.78568957990786 0.09846250359632436 1 [YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10 4 + 46.092 0 0 3.7548 3.7548 87.222 0 0 0 17.272437815030624 20.17728766960431 17.272437815030624 17.557809497117844 0 1.5 1.3979400086720375 0 0 [YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}PRH{[RE]|[WV]};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]H[PG]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]HRPWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}[C(Carbamidomethyl (C))R]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[Y{I|L}]Y[W{I|L}][DP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y[WP]{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]KYV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.7548;2.3245;2.2315;2.2273;2.0938;1.9358;1.173;1.1544;1.1544;1.0935 -;-;-;-;-;-;-;-;-;- 382 NaN NaN 123150.6 NaN 16966 3909 20875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20878 84.654 NaN 105950 35 0 18817 0.261 + -1 YLWCLVVVC 9 53 606.3001898279385 NaN 0 606.2369995117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _YLWC(Carbamidomethyl (C))LVVVC(Carbamidomethyl (C))_ REV__ENSG00000111728|ENST00000396037|ST8SIA1;REV__nc|ENSG00000111728|Q92185-2|ST8SIA1 5.230669730166228 0.26989974671959066 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.70904 0 0 251.18428971271447 662.2434176080686 913.4277073207832 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.70904 - 9 + NaN NaN 100529.5 NaN 16967 3909 20875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20880 84.659 NaN 2167400 35 0 104380 0.327 + 19663 NVLTLSLRSS 10 121 545.3168208601961 1088.6190887871921 2 545.317138671875 MULTI HCD FTMS 0 0 0 20879 2848772.25 0.790208741769359 -4 0.0737457275390625 1 Unmodified _NVLTLSLRSS_ ENSG00000148843|ENST00000369797|PDCD11 5.296884461304476 0.4472664531305844 1 Q 1 10 10.485 0 0 0.96311 0 0 590.3513549227974 367.1969568248092 957.5483117476067 0 0 0 0 0 0.5 0 0 0 Q 0.96311 - 452 + NaN NaN 411105 NaN 16968 3910 20879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20881 84.663 NaN 391320 35 0 66577 0.261 + 26544 SVMLELVAL 9 37 495.78043293069106 989.5463129281821 2 495.7808837890625 MULTI HCD FTMS 0 0 0 20879 346674.21875 0.6581909225503757 9 -0.167633056640625 2 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 74.42276476219924 0.007657080072768255 1 {I|L}E{I|L}VA{I|L} 6 3 72.925 0 0 7.3695 0 0 333.13585097480626 0 333.13585097480626 0 58.2319095436452 0 0 0 1.8494850021680094 0 1.6549471895720984 0 + {I|L}E{I|L}VA{I|L} 7.3695 + + 105 NaN NaN 158169.4 NaN 16969 3910 20879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20882 84.666 NaN 650560 35 0 43950 0.261 -1 MKVKTWRF 8 100 556.3079810701495 1110.6014092070989 2 556.3086547851562 MULTI HCD FTMS 0 0 0 20879 177384.15625 0.513804339177722 11 -0.22315216064453125 3 Oxidation (M) _M(Oxidation (M))KVKTWRF_ ENST00000332246.10_1_8:19363479-19442712:-|nuORF;ENST00000397998.7_1_8:19363479-19459293:-|nuORF;ENST00000454498.6_1_8:19363479-19448754:-|nuORF;ENST00000517494.1_2_8:19363479-19615372:-|nuORF 8.593279151180031 0.5292430274356741 1 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 8 -1 34.162 0 0 3.076 0 0 166.18963953003703 0 166.18963953003703 0 9.993230332645552 0 0 0 0 0 0.3807196863200844 0 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 3.076 - 1056 + NaN NaN 185018.1 NaN 16970 3910 20879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20883 84.67 NaN 191920 35 0 43055 0.261 + 2231 DKRKQQKCLE 10 47 638.3440880015509 1274.6736230699016 2 638.3436889648438 MULTI HCD FTMS 0 0 0 20879 123745.5 1 0 0 4 Unmodified _DKRKQQKCLE_ REV__ENSG00000166352|ENST00000334307|IFTAP;REV__nc|ENSG00000166352|Q86VG3-2|IFTAP 10.150570793230772 0.4161670024087991 1 {I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ET]|[MV]}E{I|L} 7 -1 29.481 0 0 2.3128 0 0 414.22615248847814 0 414.22615248847814 0 18.511744483784085 0 0 0 1.3494850021680094 0 0 0 {I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ET]|[MV]}E{I|L} 2.3128 - 29 NaN NaN 107587 NaN 16971 3910 20879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20884 84.673 NaN 196300 35 0 41739 0.263 + 32619 WLMECILL 8 54 510.7661689346993 1019.5177849361986 2 510.7672119140625 MULTI HCD FTMS 0 0 0 20879 75942.109375 0.6864832172809259 -7 0.118194580078125 5 Unmodified _WLMECILL_ REV__ENST00000304735.3_1_16:4432961-4433090:+|nuORF 10.183394434864962 0.5188676124868831 1 V{I|L} 2 -1 24.464 0 0 2.3996 0 0 789.3544451296913 0 789.3544451296913 0 16.505149978319906 0 0 0 0.5 0 0 0 V{I|L} 2.3996 - 26 NaN NaN 105038.5 NaN 16972 3910 20879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20885 84.676 NaN 194630 35 0 17923 0.261 + -1 IFCWAAFISK 10 58 621.8185988363593 1241.6226447395186 2 622.33837890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _IFC(Carbamidomethyl (C))WAAFISK_ REV__ENST00000420561.1_1_22:41928716-41940144:-|nuORF 13.90604991867851 0.3810395177745597 1 [YN]{I|L}{[NV]|[RG]}{[NV]|[RG]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 + 43.645 0 0 3.5152 3.5152 87.73 0 0 0 20.457574905606748 10.511525224473807 10.511525224473807 23.979400086720375 0 0 1.6989700043360187 0 0 [YN]{I|L}{[NV]|[RG]}{[NV]|[RG]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]N{[NV]|[RG]}{[NV]|[RG]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.5152;1.5839 -;- 71 NaN NaN 124402.6 NaN 16973 3910 20879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20887 84.681 NaN 1359600 35 0 57842 0.327 -1 0 118 553.8301034429838 1105.6456539527676 2 553.8302001953125 MULTI HCD FTMS 0 0 0 20886 1076924.375 0.5229048213012978 12 -0.26270294189453125 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.0657 0 0 940.5667030023754 0 940.5667030023754 0 1.1837928261270925 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0657 - 233 + NaN NaN 287867.6 NaN 16974 3911 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20888 84.686 NaN 290540 35 0 14928 0.261 + 9568 HRRHARGR 8 93 523.3029341237319 1044.5913153142637 2 523.303466796875 MULTI HCD FTMS 0 0 0 20886 169626.234375 0.291567325187914 18 -0.43614959716796875 2 Unmodified _HRRHARGR_ REV__ENSG00000188070|ENST00000433688|ZFTA 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.2219 0 0 879.5122575523482 0 879.5122575523482 0 1.14364496995508 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2219 - 125 + NaN NaN 127416.9 NaN 16975 3911 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20889 84.689 NaN 152090 35 0 20495 0.261 + 20859 PIGRDSFLF 9 62 526.2826967476769 NaN 0 526.2827758789062 PEAK HCD FTMS 0 0 0 20886 32955.54296875 0.40588268291669105 1 -0.0127105712890625 3 Unmodified _PIGRDSFLF_ REV__ENSG00000121691|ENST00000241052|CAT 7.289230182591677 0.2599242500475609 1 T{I|L} 2 -1 7.0783 0 0 0.67377 0 0 187.16938411859752 646.2226046197874 833.391988738385 0 0 0 0 0 0 0 0 0 T{I|L} 0.67377 - 12 + NaN NaN 124235.6 NaN 16976 3911 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20891 84.694 NaN 988810 35 0 135170 0.327 + 22769 QYILFPLRF 9 92 598.8448885976039 1195.6752242620078 2 598.8449096679688 MULTI HCD FTMS 0 0 0 20890 437708.6875 0.05071841404569758 35 -0.8437576293945312 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 92.4914307365334 0.004460681868130716 1 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 55.722 0 0 4.6603 4.6603 83.148 0 0 0 9.806774215010918 3.4678748622465605 3.4678748622465605 5.044321917401078 0 1.860924374808178 1.2218487496163564 0 0 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}SW 4.6603;4.2384 +;- + 1159 + NaN NaN 242523 NaN 16977 3912 20890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20892 84.698 NaN 609800 35 0 21925 0.261 -1 TEIILLIFF 9 112 575.8416492574281 1149.6687455816561 2 575.841796875 MULTI HCD FTMS 0 0 0 20890 495056.125 0.5388330430744777 9 -0.18781280517578125 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TEIILLIFF_ nc|ENSG00000198947|P11532-2|DMD 4.75600775471527 0.31496297302216103 1 W 1 -1 10.713 0 0 0.93186 0 0 945.5794491722796 0 945.5794491722796 0 0.9813624419633271 0 0 0 0 0 0 0 W 0.93186 - 202 + NaN NaN 177353.2 NaN 16978 3912 20890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20893 84.702 NaN 474870 35 0 136210 0.261 + 25912 SNWTSNFII 9 41 541.269511347607 1080.524469762014 2 541.2699584960938 MULTI HCD FTMS 0 0 0 20890 327176.625 0.7334006888871812 5 -0.10347747802734375 3 Unmodified _SNWTSNFII_ ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.35 0 0 689.2765070036729 0 689.2765070036729 0 30.255762612236907 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.35 + + 17 NaN NaN 155318.1 NaN 16979 3912 20890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20894 84.705 NaN 212960 35 0 8931.3 0.261 + 8004 GFQAQDISGQK 11 77 589.7960235811606 1177.5774942291212 2 589.7977905273438 MULTI HCD FTMS 0 0 0 20890 77167.9375 0.14036453327079182 11 -0.24999237060546875 4 Unmodified _GFQAQDISGQK_ ENSG00000153201|ENST00000283195|RANBP2;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000187627|P0DJD0|RGPD1;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant 12.174745833636585 0.35100345214875917 1 {I|L}[{I|L}T]W 4 10 27.734 0 0 2.3552 0 0 646.265373723065 0 646.265373723065 0 3.781446971601312 0 0 0 1.3252574989159953 0 0.3054621874040891 0 {I|L}[{I|L}T]W 2.3552 - 127 + NaN NaN 124961.4 NaN 16980 3912 20890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20895 84.708 NaN 210900 35 0 10278 0.263 + 20450 PALQARTR 8 68 456.771991612871 911.529430292542 2 456.77203369140625 MULTI HCD FTMS 0 0 0 20890 118168.046875 0.12698582340288703 -7 0.11843109130859375 5 Unmodified _PALQARTR_ ENST00000592689.5_1_2:179402342-179404892:+|nuORF 4.3292370932331545 0.5355693454741696 1 A 1 7 10.485 0 0 1.1502 0 0 105.07839516963232 732.4049585788467 837.4833537484791 0 0 0 0 0 0.5 0 0 0 + A 1.1502 + + 11 + NaN NaN 129477.1 NaN 16981 3912 20890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20896 84.712 NaN 30638 35 0 5309.8 0.261 -1 0 24 632.0909423828125 NaN 0 632.0909423828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91318.2 NaN 16982 3912 20890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20898 84.717 NaN 809110 35 0 83647 0.327 -1 MKSCARKLW 9 83 582.8051436978249 1163.5957344624496 2 582.8053588867188 MULTI HCD FTMS 0 0 0 20897 394369.65625 0.07012646161752265 14 -0.3385162353515625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKSCARKLW_ ENST00000512467.5_1_5:143553879-143554005:+|nuORF 28.486842064014134 0.11819662193267319 1 {I|L}T{I|L}W 4 -1 59.68 0 0 5.129 0 0 632.2918493244404 0 632.2918493244404 0 42.22225847957432 0 0 0 2 0 0.7742275032520141 0 {I|L}T{I|L}W 5.129 - 551 NaN NaN 202526.4 NaN 16983 3913 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20899 84.721 NaN 304200 35 0 37220 0.261 -1 0 60 585.8127137264215 1169.610874519643 2 585.8128662109375 MULTI HCD FTMS 0 0 0 20897 165467.640625 0.355255900356996 6 -0.10962677001953125 2 NaN NaN 1 G[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 57.802 0 0 4.942 0 0 234.13614089179845 0 234.13614089179845 0 36.83250196145322 0 0 0 1.9436726795685342 0 0 0.3494850021680094 G[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.942 - 217 NaN NaN 138519.9 NaN 16984 3913 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20900 84.724 NaN 166180 35 0 24520 0.261 -1 LCVRARSF 8 68 525.7798231673996 NaN 0 525.7803344726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))VRARSF_ ENST00000407835.5_1_22:19467711-19470234:+|nuORF 5.230669730166228 0.38822285293237185 1 Q 1 -1 3.9794 0 0 0.37915 0 0 261.08276537601165 657.3911226861936 918.4738880622053 0 0 0 0 0 0 0 0 0 Q 0.37915 - 6 + NaN NaN 116124.6 NaN 16985 3913 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20901 84.728 NaN 90579 35 0 7035.8 0.261 + 442 ALHRCLFCPF 10 46 603.8004760742188 NaN 0 603.8004760742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _ALHRCLFCPF_ ENSG00000165804|ENST00000360947|ZNF219 1.6526216038709556 0.33876987398426067 1 M 1 10 6.9897 0 0 0.57978 0 0 132.0918676112106 939.4290744611758 1071.5209420723863 0 0 0 0 0 0 0 0 0 M 0.57978 - 5 + NaN NaN 109394.8 NaN 16986 3913 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20903 84.733 NaN 523020 35 0 48357 0.327 + 32810 WTINNFSF 8 63 514.7451363464885 1027.475719759777 2 514.7455444335938 MULTI HCD FTMS 0 0 0 20902 397615.15625 0.8325723805923646 4 -0.08087921142578125 1 Unmodified _WTINNFSF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 120.45040980043947 0.022857495838760972 1 S{M(Oxidation (M))|F}[KT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7 5 60.622 0 0 5.9001 0 0 165.07879610037565 0 165.07879610037565 0 38.417148051017946 0 0 0 0.5 0 1.5356668758921828 1.1549471895720984 S{M(Oxidation (M))|F}[KT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.9001 - 402 + NaN NaN 160207.4 NaN 16987 3914 20902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20904 84.737 NaN 683990 35 0 127890 0.261 + 22666 QWPELLLRF 9 57 601.3395569908441 1200.6645610484882 2 601.3397216796875 MULTI HCD FTMS 0 0 0 20902 440129.625 1 0 0 2 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 57.72198328787511 0.020768266150574023 1 [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 9 0 + 59.275 0 0 4.9368 4.9368 91.235 0 0 0 37.82129046585631 11.751736484954378 11.751736484954378 59.27494066097715 0 1.079689690656103 1.3010299956639813 0 0.2614393726401688 + + [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 4.9368 + + 125 + NaN NaN 188325.6 NaN 16988 3914 20902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20905 84.741 NaN 689800 35 0 353970 0.261 -1 0 71 562.3440213297208 1122.6734897262415 2 562.3441772460938 MULTI HCD FTMS 0 0 0 20902 434100.1875 0.5029806165420416 15 -0.384765625 3 NaN NaN 1 {I|L}Q{M(Oxidation (M))|F}[EC]Q{I|L}{I|L} 8 -1 17.357 0 0 1.546 0 0 130.18448933737278 0 130.18448933737278 0 12.752443924689704 0 0 0 0 0 0 0.2742275032520141 {I|L}Q{M(Oxidation (M))|F}[EC]Q{I|L}{I|L} 1.546 - 258 + NaN NaN 187443.5 NaN 16989 3914 20902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20906 84.744 NaN 252150 35 0 47338 0.261 + 18369 MPLSEDFVWM 10 45 635.7773090412146 1269.5400651492291 2 635.7774658203125 MULTI HCD FTMS 0 0 0 20902 160109.265625 0.5628286235927902 9 -0.2113189697265625 4 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 52.268347100219714 0.06954005568441465 1 VW{M(Oxidation (M))|F} 3 7 36.198 0 0 2.8513 0 0 819.3486681301428 0 819.3486681301428 0 29.20818753952375 0 0 0 1 0 0 0 + VW{M(Oxidation (M))|F} 2.8513 + + 53 NaN NaN 119032.3 NaN 16990 3914 20902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20907 84.747 NaN 152290 35 0 22315 0.262 + 28538 TPQFPDMIL 9 53 531.2701063807082 1060.5256598282162 2 531.270751953125 MULTI HCD FTMS 0 0 0 20902 88217.9921875 0.03239628520782321 34 -0.8411483764648438 5 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 8.745405648335112 0.2847203663274469 1 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 7 26.198 0 0 2.4703 0 0 661.3473194336524 0 661.3473194336524 0 0.22878745280337398 0 0 0 0 0 0 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.4703 - 68 + NaN NaN 105057.9 NaN 16991 3914 20902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20908 84.75 NaN 159880 35 0 8046.5 0.261 + 26616 SWIIKYGRR 9 72 589.8449832256613 NaN 0 589.8447265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SWIIKYGRR_ ENSG00000131018|ENST00000367255|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant 10.823927491677226 0.2427956001690155 1 N{I|L} 2 8 11.454 0 0 0.97256 0 0 131.22639115659746 816.2868133705999 947.5132045271973 0 0 0 0 0 0 0 0 0.5 N{I|L} 0.97256 - 44 + NaN NaN 114562 NaN 16992 3914 20902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20910 84.755 NaN 319260 35 0 75637 0.326 + -1 LGKCNACS 8 53 419.18308180018954 836.3516106671791 2 419.1834716796875 MULTI HCD FTMS 0 0 0 20909 337880.0625 0.23535049981846154 8 -0.1885986328125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGKCNACS_ REV__ENST00000299300.10_1_12:69991496-69991529:+|nuORF 2.302733041254933 0.5385759549224092 1 {I|L} 1 -1 4.6041 0 0 0.5505 0 0 59.0312504150291 661.2078004487308 720.23905086376 0 0 0 0 0 0 0 0 0 {I|L} 0.5505 + + 6 + NaN NaN 142300.2 NaN 16993 3915 20909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20911 84.76 NaN 651300 35 0 195810 0.261 + 35692 YYLDAVVSF 9 56 538.7685395922941 1075.5225262513882 2 538.7689208984375 MULTI HCD FTMS 0 0 0 20909 270215.65625 0.40983382083909636 1 -0.02272796630859375 2 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 81.89019881105858 0.005240739447516426 1 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 9 5 + 74.587 0 0 6.935 6.935 85.104 0 0 0 0.7327776955244047 0.7327776955244047 0.7327776955244047 0.7327776955244047 0 1.9247425010840047 1.5228787452803376 0.4247425010840047 0 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F};YY{I|L}DAVVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[YE]VVS{M(Oxidation (M))|F} 6.935;6.8668;5.9791 -;+;- + 220 NaN NaN 179888.1 NaN 16994 3915 20909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20912 84.763 NaN 647000 35 0 86239 0.261 + 21515 PYISNIYLI 9 70 548.3079661776204 1094.6013794220407 2 548.3082275390625 MULTI HCD FTMS 0 0 0 20909 268544.46875 0.17525947853602294 8 -0.1885986328125 3 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 56.17704186161178 0.022929533404884107 1 [Y{I|L}]S[NP]{I|L}Y{I|L}{I|L} 9 2 + 75.072 0 0 6.8584 6.8584 85.584 0 0 0 11.211375162600703 16.478174818886373 11.211375162600703 2.003187623076954 0 1.3494850021680094 1.5228787452803376 0.3494850021680094 0.6989700043360187 [Y{I|L}]S[NP]{I|L}Y{I|L}{I|L};[Y{I|L}]P[NS]{I|L}Y{I|L}{I|L};[Y{I|L}]PE[KG]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KG]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}T{I|L}Y{I|L}{I|L};[YV]T[NP]{I|L}Y{I|L}{I|L};[Y{I|L}]PE{I|L}[Y{I|L}][KG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[Y{I|L}][KG];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}RRT[KG] 6.8584;6.6754;5.9238;5.8341;5.0825;5.0593;4.695;2.3638;1.5226;0.93472 -;-;-;+;-;-;-;-;-;- + 1250 NaN NaN 190257.4 NaN 16995 3915 20909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20913 84.767 NaN 175860 35 0 21604 0.261 + 8438 GYVQRKRR 8 57 531.816408717753 1061.618264502306 2 531.816650390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _GYVQRKRR_ REV__ENSG00000146250|ENST00000369700|PRSS35 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2339 0 0 896.5392982931247 0 896.5392982931247 0 0.6246936830414995 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2339 - 34 + NaN NaN 113624 NaN 16996 3915 20909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20914 84.77 NaN 50302 35 0 9983.6 0.263 + 8706 HGPPHTPA 8 27 407.2039546322932 NaN 0 407.2040100097656 PEAK HCD FTMS 0 0 0 20909 44879.56640625 0.5080134864564597 9 -0.21795654296875 5 Unmodified _HGPPHTPA_ REV__ENSG00000183090|ENST00000329798|FREM3 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81820.5 NaN 16997 3915 20909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20915 84.773 NaN 83730 35 0 6834.9 0.261 + 31047 VSSYPYLAI 9 39 506.7711486816406 NaN 0 506.7711486816406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VSSYPYLAI_ REV__ENSG00000198399|ENST00000355123|ITSN2;REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2;REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2;REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2 3.944395688203298 0.27613285122220627 1 A 1 -1 6.9897 0 0 0.691 0 0 131.0926627912125 806.3723848932249 937.4650476844374 0 0 0 0 0 0 0 0 0 A 0.691 + + 1 + NaN NaN 87589.8 NaN 16998 3915 20909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20917 84.778 NaN 612020 35 0 182940 0.327 + 28403 TPFLYDLVM 9 74 557.7779456169287 1113.5413383006573 2 557.7784423828125 MULTI HCD FTMS 0 0 0 20916 333004.90625 0.3898743412826867 -9 0.1707305908203125 1 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 64.23631603340823 0.01165516075559909 1 YD{I|L}V{M(Oxidation (M))|F} 5 4 69.196 0 0 6.214 0 0 458.2527432486074 0 458.2527432486074 0 55.21652514092061 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + YD{I|L}V{M(Oxidation (M))|F} 6.214 + + 453 NaN NaN 177546.3 NaN 16999 3916 20916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20918 84.782 NaN 644250 35 0 96443 0.261 + 22813 QYLLVTALY 9 61 542.3078124016469 1082.6010718700936 2 542.30810546875 MULTI HCD FTMS 0 0 0 20916 294873.15625 0.36181671008545463 -5 0.096832275390625 2 Unmodified _QYLLVTALY_ ENSG00000165389|ENST00000298130|SPTSSA 74.92900055777586 0.007493270374442853 1 TA{I|L}Y 4 5 60.433 0 0 5.5822 0 0 616.3582224619173 0 616.3582224619173 0 49.97547537623447 0 0 0 2 0 0.8494850021680094 0 + TA{I|L}Y 5.5822 + + 110 NaN NaN 177926.8 NaN 17000 3916 20916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20919 84.786 NaN 392490 35 0 75665 0.261 + 11640 IYVIGLQEL 9 68 524.3070675049626 1046.599582076725 2 524.3075561523438 MULTI HCD FTMS 0 0 0 20916 167830.59375 0.884606467917407 2 -0.035430908203125 3 Unmodified _IYVIGLQEL_ ENSG00000132376|ENST00000421807|INPP5K 56.17704186161178 0.022929533404884107 1 [Y{I|L}]V{I|L}{[VA]|[{I|L}G]}QE{I|L} 9 0 + 53.918 0 0 5.1518 5.1518 86.504 0 0 0 5.6424927368725974 43.460696996448576 5.6424927368725974 9.208187539523749 0 1.805462187404089 0 0 0 + + [Y{I|L}]V{I|L}{[VA]|[{I|L}G]}QE{I|L};[Y{I|L}]V{I|L}{[VA]|[{I|L}G]}[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}K{[MG]|[TS]}{I|L}M{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}K[KT][C(Carbamidomethyl (C))R]{I|L} 5.1518;4.2719;2.5245;0.70653 +;-;-;- + 204 NaN NaN 153106.8 NaN 17001 3916 20916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20920 84.789 NaN 439850 35 0 78057 0.261 -1 EMSTQKIVGM 10 77 578.2724265297281 1154.5303001262562 2 578.2726440429688 MULTI HCD FTMS 0 0 0 20916 278998.9375 0.7695983031534083 -1 0.02272796630859375 4 2 Oxidation (M) _EM(Oxidation (M))STQKIVGM(Oxidation (M))_ tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1 17.11289562659939 0.35104376501799556 1 PM{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 6 -1 59.931 0 0 5.191 0 0 458.24360854316564 0 458.24360854316564 0 48.50452252056609 0 0 0 2 0 0 0 PM{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5.191 - 318 NaN NaN 170849.4 NaN 17002 3916 20916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20921 84.793 NaN 73268 35 0 10663 0.264 + 28303 TLTTLTTG 8 45 404.227783203125 NaN 0 404.227783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TLTTLTTG_ ENSG00000054983|ENST00000261304|GALC;GALC|p.W629Mfs*9|1|0.24|ENSG00000054983|chr14:87939931-87939932|-/T|frameshift_variant;nc|ENSG00000054983|P54803-3|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-5|GALC 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92571.4 NaN 17003 3916 20916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20923 84.797 NaN 2334100 35 0 111240 0.327 -1 0 113 545.3168208601961 1088.6190887871921 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20922 3123491.5 0.8664119387368673 3 -0.05489349365234375 1 NaN NaN 1 {M(Oxidation (M))|F}KYYKN 6 -1 19.249 0 0 1.7682 0 0 227.12056166816564 0 227.12056166816564 0 9.516763397633746 0 0 0 0.5 0 0 0.5866968715561641 {M(Oxidation (M))|F}KYYKN 1.7682 - 218 NaN NaN 452356.5 NaN 17004 3917 20922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20924 84.802 NaN 809650 35 0 27094 0.261 -1 0 116 567.3307443934895 1132.6469358537788 2 567.3308715820312 MULTI HCD FTMS 0 0 0 20922 748322.4375 0.5009683250633304 25 -0.6799774169921875 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2894 0 0 967.5679696445976 0 967.5679696445976 0 2.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2894 - 664 + NaN NaN 224074.9 NaN 17005 3917 20922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20925 84.805 NaN 1078000 35 0 88563 0.263 -1 0 98 448.258728435355 894.50290393751 2 448.2590026855469 MULTI HCD FTMS 0 0 0 20922 821199.5625 0.821264853055818 -4 0.080810546875 3 NaN NaN 1 Q 1 -1 8.8735 0 0 0.992 0 0 590.3527088849625 173.08106400099373 763.4337728859562 0 0 0 0 0 0.7614393726401688 0 0 0 Q 0.992 - 40 NaN NaN 239708.1 NaN 17006 3917 20922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20926 84.809 NaN 260020 35 0 22087 0.261 + 19780 NYAWVYYHL 9 78 614.7943040834457 1227.5740552336913 2 614.2962036132812 MULTI HCD FTMS 0 0 0 20922 99608.9765625 0.7702145427598547 9 -0.23479461669921875 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 32.78568957990786 0.09846250359632436 1 [YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10 4 + 35.812 0 0 2.9173 2.9173 85.766 0 0 0 13.190038161912124 7.269987279362624 7.269987279362624 13.190038161912124 0 1.5 1.3979400086720375 0 0 [YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][HQ][{M(Oxidation (M))|F}V]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y[W{I|L}][DP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y[HS]{[WT]|[RM]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}[C(Carbamidomethyl (C))R]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.9173;1.8428;1.5869;1.4169;0.9945;0.60583;0.56436 -;-;-;-;-;-;- 331 NaN NaN 126694.7 NaN 17007 3917 20922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20928 84.813 NaN 1433200 35 0 62447 0.327 -1 0 114 553.8301034429838 1105.6456539527676 2 553.8303833007812 MULTI HCD FTMS 0 0 0 20927 1124073.5 0.5457982624332599 19 -0.5366363525390625 1 NaN NaN 1 D 1 -1 10.599 0 0 0.95862 0 0 61.05295100810378 926.5180007007567 987.5709517088605 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95862 - 520 + NaN NaN 299965.8 NaN 17008 3918 20927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20929 84.818 NaN 111540 35 0 27054 0.261 + 32713 WPMDFIVI 8 47 510.7661689346993 1019.5177849361986 2 510.76654052734375 MULTI HCD FTMS 0 0 0 20927 75199 0.6797658358605259 1 -0.0127410888671875 2 Unmodified _WPMDFIVI_ REV__ENSG00000130150|ENST00000380492|MOSPD2;REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 14.581692164780916 0.48650662947107914 1 DV{I|L} 3 -1 30.445 0 0 2.9862 0 0 674.3303394732974 0 674.3303394732974 0 21.49288766643714 0 0 0 0 0 0.4247425010840047 0 DV{I|L} 2.9862 - 12 NaN NaN 99478.1 NaN 17009 3918 20927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20930 84.821 NaN 136260 35 0 8482 0.261 + 14837 LKEQGLTE 8 57 459.2496525909755 916.484752248751 2 459.2502746582031 MULTI HCD FTMS 0 0 0 20927 41829.30078125 0.27140459843994896 -2 0.035430908203125 3 Unmodified _LKEQGLTE_ REV__CON__H-INV:HIT000292931;REV__CON__P05787;REV__CON__Q9H552;REV__ENSG00000170421|ENST00000692008|KRT8;REV__ENST00000409686.2_1_9:102067468-102068890:+|nuORF;REV__ENST00000450021.1_1_2:183936291-183936849:-|nuORF;REV__ENST00000515599.1_1_5:146086275-146086944:-|nuORF;REV__ENST00000550170.5_1_12:53294858-53298765:-|nuORF;REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF;REV__ENST00000562317.1_1_16:78082520-78083381:-|nuORF;REV__nc|ENSG00000170421|P05787-2|KRT8 3.944395688203298 0.5361403129012058 1 Q 1 -1 5.2165 0 0 0.56919 0 0 308.1850829145697 477.2323092096313 785.417392124201 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.56919 + + 20 + NaN NaN 106476.5 NaN 17010 3918 20927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20932 84.826 NaN 469460 35 0 16871 0.327 + 8075 GILWRVLFF 9 101 575.8416492574281 1149.6687455816561 2 575.8417358398438 MULTI HCD FTMS 0 0 0 20931 353264.5 0.38450304103435506 16 -0.46826934814453125 1 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.1738 0 0 984.5897030785296 0 984.5897030785296 0 4.638494991635174 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1738 + + 133 + NaN NaN 168635.6 NaN 17011 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20933 84.831 NaN 645580 35 0 94226 0.261 + 22770 QYILFPLRF 9 73 598.8448885976039 1195.6752242620078 2 598.8450317382812 MULTI HCD FTMS 0 0 0 20931 300042.53125 0.03476668790417063 42 -1.03778076171875 2 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 92.4914307365334 0.004460681868130716 1 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 55.053 0 0 4.6043 4.6043 80.738 0 0 0 5.585456211725202 0.2237030067185941 0.2237030067185941 0.2237030067185941 0 1.860924374808178 1.154901959985743 0 0 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}PR{I|L}{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4.6043;4.5856;3.825 +;-;- + 250 + NaN NaN 184756.2 NaN 17012 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20934 84.834 NaN 274950 35 0 45563 0.262 + 26545 SVMLELVAL 9 38 495.78043293069106 989.5463129281821 2 495.78033447265625 MULTI HCD FTMS 0 0 0 20931 156073.28125 0.2963185936981412 18 -0.523895263671875 3 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 48.345845343767074 0.03388484103555672 1 V{I|L}E{I|L}MA{I|L} 7 3 52.963 0 0 5.3523 0 0 202.13171584297032 0 202.13171584297032 0 45.97373228030179 0 0 0 1.274227503252014 0 0.8494850021680094 0 V{I|L}E{I|L}MA{I|L} 5.3523 - 86 NaN NaN 139722.4 NaN 17013 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20935 84.837 NaN 214940 35 0 42476 0.261 + 21585 PYNDYFEYF 9 43 629.2591136157014 NaN 0 629.25927734375 PEAK HCD FTMS 0 0 0 20931 69126.5859375 0.29930958089366216 19 -0.54998779296875 4 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 20.41453444215458 0.1846157837989407 1 YE{M(Oxidation (M))|F} 3 6 27.307 0 0 2.1733 0 0 165.0820991351864 649.2267356833647 814.3088348185511 0 0 0 0 0 1.2614393726401687 0 0 0 YE{M(Oxidation (M))|F} 2.1733 - 20 + NaN NaN 109130.2 NaN 17014 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20936 84.841 NaN 213130 35 0 66913 0.264 + 25727 SKKRPARS 8 48 465.2852119357903 928.5558709383806 2 465.28564453125 MULTI HCD FTMS 0 0 0 20931 128765.7734375 0.45249129637481367 -1 0.0127410888671875 5 Unmodified _SKKRPARS_ ENSG00000110237|ENST00000263674|ARHGEF17 2.302733041254933 0.5385759549224092 1 A 1 7 3.0989 0 0 0.33374 0 0 210.15866742451186 644.3476540668154 854.5063214913273 0 0 0 0 0 0 0 0 0 + A 0.33374 + + 10 + NaN NaN 120198.1 NaN 17015 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20937 84.844 NaN 124790 35 0 7734.7 0.261 + 14234 LCCRGNIVPGF 11 56 589.7953512015573 1177.5761494699145 2 589.7964477539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LCCRGNIVPGF_ REV__ENSG00000159339|ENST00000375448|PADI4 5.731851221503515 0.39378271418728467 1 YY{I|L} 3 -1 25.942 0 0 2.203 0 0 0 735.3410169838395 735.3410169838395 12.98332479720628 0 0 0 0 0 2 0 0 YY{I|L} 2.203 - 25 NaN NaN 94388.4 NaN 17016 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20938 84.847 NaN 70476 35 0 9435 0.261 + -1 PLLRCRVSEF 10 38 638.8458862304688 NaN 0 638.8458862304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _PLLRC(Carbamidomethyl (C))RVSEF_ REV__ENSG00000157119|ENST00000287777|KLHL40;REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40 1.4819007175156935 0.33891598740166873 1 Q 1 -1 9.6041 0 0 0.75345 0 0 527.3109601469222 616.2850435846311 1143.5960037315533 0 0 0 0 0 0.5 0 0 0 Q 0.75345 - 2 + NaN NaN 105112.2 NaN 17017 3919 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20940 84.852 NaN 798930 35 0 40839 0.327 + 20443 PALAQRTR 8 96 456.771991612871 911.529430292542 2 456.7723083496094 MULTI HCD FTMS 0 0 0 20939 811605.75 0.8721682990266287 1 -0.02944183349609375 1 Unmodified _PALAQRTR_ ENST00000476284.1_1_22:50964673-50968379:-|nuORF 12.531546534597751 0.5015908124873912 1 W 1 8 10.379 0 0 1.1386 0 0 707.4398592249623 0 707.4398592249623 0 2.151778472130168 0 0 0 0 0 0 0 W 1.1386 - 75 + NaN NaN 213197.3 NaN 17018 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20941 84.857 NaN 508430 35 0 49221 0.261 + 16738 LYARLFDFL 9 81 579.3203810878317 1156.6262092424633 2 579.3206176757812 MULTI HCD FTMS 0 0 0 20939 242521.6875 0.7578550362727179 1 -0.02944183349609375 2 Unmodified _LYARLFDFL_ ENSG00000142347|ENST00000644032|MYO1F;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000595191.1_1_19:8614980-8615536:-|nuORF;ENST00000600825.1_1_19:8612859-8615196:-|nuORF 63.960520009940105 0.0120409805053046 1 [Y{I|L}]AR{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 9 0 + 57.421 0 0 4.9646 4.9646 88.945 0 0 0 9.364000351794957 29.33922753138765 9.364000351794957 17.574703959221836 0 1.9551120522087029 1.5228787452803376 0 0 + + [Y{I|L}]AR{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};[Y{I|L}]AR{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F}{I|L};[Y{I|L}]AR{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{I|L} 4.9646;3.4451;2.7501;1.8167;1.2307;0.29719 +;-;-;-;-;- + 1058 NaN NaN 166615 NaN 17019 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20942 84.86 NaN 403470 35 0 36351 0.261 -1 MKSCARKLW 9 69 582.8051436978249 1163.5957344624496 2 582.8048706054688 MULTI HCD FTMS 0 0 0 20939 200643.703125 0.03567828488577567 21 -0.5923614501953125 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKSCARKLW_ ENST00000512467.5_1_5:143553879-143554005:+|nuORF 15.847184025352803 0.2234401846867398 1 {I|L}T{I|L}W 4 -1 59.24 0 0 5.0911 0 0 632.290970710358 0 632.290970710358 0 37.96810789879984 0 0 0 1.9247425010840047 0 0.805462187404089 0 {I|L}T{I|L}W 5.0911 - 417 NaN NaN 149630.9 NaN 17020 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20943 84.864 NaN 364600 35 0 24672 0.261 + 19781 NYAWVYYHL 9 85 614.7943040834457 1227.5740552336913 2 614.7940673828125 MULTI HCD FTMS 0 0 0 20939 42843.31640625 0.21442876599610208 20 -0.576080322265625 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.02929079705179888 1 [YN]AWVYYH{I|L} 9 0 + 52.038 0 0 4.2391 4.2391 81.865 0 0 0 17.081954859771344 21.109411011600933 17.081954859771344 3.583245659840472 0 1.7713701378068185 1.3979400086720375 0 0.3054621874040891 + + [YN]AWVYYH{I|L};[YN]AWVYQ{[RE]|[WV]};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWVY[AG]{[RE]|[WV]};[YN]A{[DA]|[EG]}[RP]H{[RE]|[WV]};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][HQ][{M(Oxidation (M))|F}V]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][WY]{I|L}[DP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.2391;3.9472;3.6358;3.5858;3.2284;3.1971;2.0688;1.9863;1.4169;1.1544 +;-;-;-;-;-;-;-;-;- + 785 NaN NaN 144867.6 NaN 17021 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20944 84.867 NaN 143300 35 0 19075 0.261 + 22659 QWPEGLKFLF 10 50 632.8395515751334 1263.6645502170668 2 632.839111328125 MULTI HCD FTMS 0 0 0 20939 69514.6875 0.48077506004906373 -4 0.074249267578125 5 Unmodified _QWPEGLKFLF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 21.536976647645854 0.3096624038397699 1 [WQ]KK 4 7 28.06 0 0 2.2205 0 0 0 690.2976778619749 690.2976778619749 21.070006276765483 0 0 0 0 0.4247425010840047 1.3010299956639813 0 0 [WQ]KK 2.2205 - 94 + NaN NaN 120132.6 NaN 17022 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20945 84.87 NaN 110520 35 0 16285 0.263 + 7392 FVILVENAL 9 35 509.30221206543183 1016.5898711976637 2 509.30267333984375 MULTI HCD FTMS 0 0 0 20939 65934.3203125 0.5363285081563677 6 -0.179901123046875 6 Unmodified _FVILVENAL_ ENSG00000070214|ENST00000374720|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;nc|ENSG00000070214|Q8WWI5-3|SLC44A1 16.149105407346934 0.22083165093524068 1 VE{[QG]|[NA]}{I|L} 5 4 21.937 0 0 2.1579 0 0 472.3036366193375 0 472.3036366193375 0 14.947274948966935 0 0 0 0.75 0 0 0 + VE{[QG]|[NA]}{I|L} 2.1579 + + 10 NaN NaN 98615.1 NaN 17023 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20946 84.874 NaN 194740 35 0 14293 0.261 + 34059 YNIAYGKSLKS 11 63 622.3378648047427 NaN 0 622.319580078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YNIAYGKSLKS_ ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1 4.897010918128616 0.3282287337590871 1 {I|L} 1 10 6.9897 0 0 0.56248 0 0 852.4713746464191 274.08295618228755 1126.5543308287067 0 0 0 0 0 0 0 0 0 + {I|L} 0.56248 + + 14 + NaN NaN 116724.2 NaN 17024 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20947 84.877 NaN 69022 35 0 4104.8 0.264 + 12274 KLPALFFL 8 40 474.79913330078125 NaN 0 474.79913330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 24.67388899826682 0.38182156912090326 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 6 20.969 0 0 2.2129 0 0 131.094738782481 519.3290499322874 650.4237887147683 0 0 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2129 + + 4 + NaN NaN 87512.9 NaN 17025 3920 20939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20949 84.882 NaN 657050 35 0 325520 0.327 + 818 AVKSRRPGPR 10 72 562.3440213297208 1122.6734897262415 2 562.344482421875 MULTI HCD FTMS 0 0 0 20948 269349.9375 0.3120887793426958 22 -0.6084136962890625 1 Unmodified _AVKSRRPGPR_ REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF 3.2813086475875832 0.45793521633868084 1 Y 1 -1 6.9897 0 0 0.62259 0 0 132.1817689481415 824.4029730901807 956.5847420383222 0 0 0 0 0 0 0 0 0 Y 0.62259 - 81 + NaN NaN 176366.8 NaN 17026 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20950 84.886 NaN 421950 35 0 46801 0.261 + 23360 RKLFFSALF 9 90 564.8329421820108 NaN 0 564.8219604492188 PEAK HCD FTMS 0 0 0 20948 12497.65625 1 0 0 2 Unmodified _RKLFFSALF_ ENST00000562642.1_1_16:30967689-30967737:+|nuORF 7.289230182591677 0.2599242500475609 1 N 1 9 5.5989 0 0 0.49651 0 0 735.4499522029248 275.14060388736567 1010.5905560902904 0 0 0 0 0 0.25 0 0 0 N 0.49651 - 61 + NaN NaN 144603.3 NaN 17027 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20951 84.89 NaN 307480 35 0 29111 0.261 -1 0 64 585.8127137264215 1169.610874519643 2 585.8126220703125 MULTI HCD FTMS 0 0 0 20948 157222.796875 0.337554376490181 14 -0.412750244140625 3 NaN NaN 1 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 51.37 0 0 4.3921 0 0 517.253709861525 0 517.253709861525 0 36.67735320183944 0 0 0 1.3494850021680094 0 0 0.3807196863200844 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.3921 - 225 NaN NaN 137297.1 NaN 17028 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20952 84.893 NaN 242730 35 0 63708 0.264 -1 MKWIFWVQT 9 35 432.8852127547194 NaN 0 432.88507080078125 PEAK HCD FTMS 0 0 0 20948 180862.203125 0.6509849149329274 41 -1.0151214599609375 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))KWIFWVQT_ ENST00000525948.5_1_1:31465427-31465475:-|nuORF 0.26902006276349055 0.29394320858957723 1 C(Carbamidomethyl (C)) 1 -1 0.9691 0 0 0.1122 0 0 289.5614278514326 411.1439303033813 700.7053581548139 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.1122 - 1 + NaN NaN 118244.7 NaN 17029 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20953 84.896 NaN 70205 35 0 6346.2 0.261 + 27674 TALPRVMF 8 46 467.7629300635798 933.5113071939596 2 467.76324462890625 MULTI HCD FTMS 0 0 0 20948 49453.59765625 0.5457453050833663 1 -0.03604888916015625 5 Unmodified _TALPRVMF_ REV__ENSG00000179869|ENST00000435803|ABCA13;REV__nc|ENSG00000179869|Q86UQ4-3|ABCA13;REV__nc|ENSG00000179869|Q86UQ4-4|ABCA13;REV__nc|ENSG00000179869|Q86UQ4-5|ABCA13;REV__nc|ENSG00000179869|Q86UQ4-6|ABCA13;REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13;REV__nc|ENSG00000179869|Q86UQ4|ABCA13 5.230669730166228 0.5342319408533849 1 [TA]{I|L}E 4 -1 28.416 0 0 3.044 0 0 0 516.2705899910877 516.2705899910877 24.921525057367404 0 0 0 0 0 1.6989700043360187 0 0 [TA]{I|L}E 3.044 - 25 NaN NaN 92946.6 NaN 17030 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20954 84.9 NaN 139260 35 0 39680 0.261 + 22667 QWPELLLRF 9 44 601.3395569908441 1200.6645610484882 2 601.3396606445312 MULTI HCD FTMS 0 0 0 20948 96685.203125 0.21967438143933166 7 -0.2061614990234375 6 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 18.1463463914782 0.20357593197100715 1 [WQ][EP]{I|L}{I|L}{I|L}[R{M(Oxidation (M))|F}] 9 0 + 18.27 0 0 1.5217 1.5217 86.33 0 0 0 14.291062151110708 4.762036441594196 4.762036441594196 18.270462237831083 0 0.3252574989159953 1.0969100130080565 0 0 + + [WQ][EP]{I|L}{I|L}{I|L}[R{M(Oxidation (M))|F}] 1.5217 + + 23 + NaN NaN 116982.8 NaN 17031 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20955 84.903 NaN 131860 35 0 9491.2 0.261 + 11025 IYERLFCWI 9 55 621.8185988363593 1241.6226447395186 2 621.8211669921875 MULTI HCD FTMS 0 0 0 20948 76456.4453125 1 0 0 7 Unmodified _IYERLFCWI_ ENSG00000176658|ENST00000318217|MYO1D 15.248480904072842 0.22861284681709862 1 [YN]{I|L}[RK]{M(Oxidation (M))|F}C{[DA]|[EG]}{I|L} 10 5 + 32.127 0 0 2.5875 2.5875 82.571 0 0 0 8.212112250009653 10.699849938126889 8.212112250009653 8.45098040014257 0 0.3252574989159953 1.3979400086720375 0 0 [YN]{I|L}[RK]{M(Oxidation (M))|F}C{[DA]|[EG]}{I|L};[YN][RK]{I|L}{M(Oxidation (M))|F}C{[DA]|[EG]}{I|L};{[C(Carbamidomethyl (C))E]|[WC]}[WK]H[{I|L}A]W{I|L};[Y{I|L}]{[RE]|[WV]}{I|L}{M(Oxidation (M))|F}CW{I|L};[Y{I|L}]N[RK]{M(Oxidation (M))|F}C{[DA]|[EG]}{I|L};[Y{I|L}]{[RE]|[WV]}{I|L}{M(Oxidation (M))|F}C{[DA]|[EG]}{I|L} 2.5875;1.9068;1.4789;1.3807;1.3197;0.6391 -;-;-;+;-;- + 192 NaN NaN 112685.8 NaN 17032 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20956 84.906 NaN 140080 35 0 24845 0.262 + 11770 KEAHYFSF 8 44 514.7451363464885 1027.475719759777 2 514.7448120117188 MULTI HCD FTMS 0 0 0 20948 53719.1328125 0.11248330348086558 11 -0.32398223876953125 8 Unmodified _KEAHYFSF_ ENST00000261483.4_1_5:109202701-109202797:+|nuORF 32.30548876998284 0.3297748069446609 1 S{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7 5 40.706 0 0 3.9617 0 0 165.07460895960736 0 165.07460895960736 0 36.10161358642024 0 0 0 0 0 0.7742275032520141 0.4247425010840047 S{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3.9617 - 38 + NaN NaN 115844.8 NaN 17033 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20957 84.91 NaN 284760 35 0 34045 0.261 + 4617 EYLYFFRVL 9 68 625.3341807605485 1248.653808587897 2 625.333251953125 MULTI HCD FTMS 0 0 0 20948 82584.8515625 0.3286308135713906 -4 0.0843353271484375 9 Unmodified _EYLYFFRVL_ ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF 126.56589448801843 0.0008132384440316759 1 [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 9 0 + 109.74 0 0 8.7885 8.7885 98.293 0 0 0 26.911225100727606 16.478174818886387 16.478174818886387 109.7376000126687 0 2.9247425010840047 1.5228787452803376 2.973197507588033 0 + + [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 8.7885 + + 206 NaN NaN 138056.4 NaN 17034 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20958 84.913 NaN 300800 35 0 44827 0.261 -1 LYPVTVNMLF 10 42 606.8200580829238 1211.6255632326474 2 606.8207397460938 MULTI HCD FTMS 0 0 0 20948 69676.3359375 0.2891988892983287 -4 0.0843353271484375 10 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 22.736283301280096 0.29844449404982915 1 [Y{I|L}][VP][H{I|L}]{I|L}{I|L} 8 -1 27.14 0 0 2.24 0 0 0 260.0301402192287 260.0301402192287 25.150312510170778 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}][VP][H{I|L}]{I|L}{I|L} 2.24 - 16 NaN NaN 142559.6 NaN 17035 3921 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20960 84.918 NaN 340260 35 0 72211 0.327 + 35693 YYLDAVVSF 9 45 538.7685395922941 1075.5225262513882 2 538.7689208984375 MULTI HCD FTMS 0 0 0 20959 107471.3359375 0.16300087437271768 8 -0.2324676513671875 1 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 30.636539890814138 0.10832830463492794 1 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 9 5 + 51.405 0 0 4.7795 4.7795 90.732 0 0 0 2.164537177296495 44.41508427897837 2.164537177296495 51.40478432233856 0 1.7302046884880937 0 0 0 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 4.7795 - 64 NaN NaN 133605 NaN 17036 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20961 84.922 NaN 494820 35 0 40986 0.261 + 20372 NYTSLLVTW 9 80 548.7871231469039 1095.5596933606078 2 548.787353515625 MULTI HCD FTMS 0 0 0 20959 174008.484375 1 0 0 2 Unmodified _NYTSLLVTW_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 79.59630418116434 0.005983006570063981 1 [Y{I|L}]S{[QS]|[NT]}{I|L}VTW 9 3 + 73.57 0 0 6.7153 6.7153 84.942 0 0 0 1.249387366082999 1.706962271689747 1.249387366082999 1.249387366082999 0 2 0 1.3371804965004639 1.086696871556164 [Y{I|L}]S{[QS]|[NT]}{I|L}VTW;[YV]T{[QS]|[NT]}{I|L}VTW;{[CT]|[{M(Oxidation (M))|F}G]}TV{I|L}{[QS]|[NT]}TP{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Y{[QS]|[NT]}{I|L}VTW;[Y{I|L}]Q{[CA]|SS}{I|L}VTW;[Y{I|L}]Q{I|L}{[CA]|SS}VTW;[YN]T{[TV]|[{I|L}S]}{I|L}VTW;{[CT]|[{M(Oxidation (M))|F}G]}TV{[CA]|SS}{I|L}VTW;{[CT]|[{M(Oxidation (M))|F}G]}TV{I|L}{[CA]|SS}VTW;{[CT]|[{M(Oxidation (M))|F}G]}TV{I|L}{[CA]|SS}C(Carbamidomethyl (C)){I|L}{I|L} 6.7153;6.6013;6.5595;6.4405;6.3754;6.0564;6.0492;5.5025;5.1835;4.7038 -;-;-;-;-;-;+;-;-;- + 1510 NaN NaN 155703.4 NaN 17037 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20962 84.926 NaN 289980 35 0 43755 0.261 -1 QEAMTWDCIL 10 64 613.2666686483938 1224.5187843635874 2 613.2671508789062 MULTI HCD FTMS 0 0 0 20959 110362.9140625 0.8732392285352522 1 -0.02613067626953125 3 Oxidation (M) _QEAM(Oxidation (M))TWDCIL_ ENST00000311915.12_1_12:64580977-64581100:-|nuORF 15.248480904072842 0.3684828712757339 1 {I|L}DT{NN|[MP]|[D{I|L}]|[EV]} 5 -1 31.884 0 0 2.6038 0 0 649.2267601005678 0 649.2267601005678 0 6.077184142563468 0 0 0 1.4436726795685342 0 0 0 {I|L}DT{NN|[MP]|[D{I|L}]|[EV]} 2.6038 - 65 NaN NaN 130518.3 NaN 17038 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20963 84.929 NaN 150950 35 0 33399 0.261 + 22668 QWPELLLRF 9 40 601.3395569908441 1200.6645610484882 2 601.339599609375 MULTI HCD FTMS 0 0 0 20959 53878.51171875 0.12241509923070959 8 -0.2324676513671875 4 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 34.40172386719151 0.0910440009062557 1 [WQ][EP]{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 9 0 + 31.092 0 0 2.5896 2.5896 87.699 0 0 0 10.831590422496124 9.137342758552695 9.137342758552695 31.09243748081781 0 0.6989700043360187 1.3010299956639813 0 0 + + [WQ][EP]{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 2.5896 + + 57 + NaN NaN 104783.7 NaN 17039 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20964 84.932 NaN 382970 35 0 58605 0.261 -1 LYPVTVNMLF 10 42 606.8200580829238 1211.6255632326474 2 607.3206787109375 MULTI HCD FTMS 0 0 0 20959 66560.234375 0.41379272494601327 -5 0.12038421630859375 5 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 29.081581746732265 0.240155558137004 1 [Y{I|L}][HK]{I|L} 5 -1 14.181 0 0 1.1704 0 0 0 554.2306617146147 554.2306617146147 8.239087409443185 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}][HK]{I|L} 1.1704 - 21 NaN NaN 157887.9 NaN 17040 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20965 84.936 NaN 144270 35 0 25861 0.261 -1 MPLSEDFVWM 10 47 635.7773090412146 1269.5400651492291 2 635.7782592773438 MULTI HCD FTMS 0 0 0 20959 57347.30859375 0.20159174821379922 17 -0.4712677001953125 6 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 37.97399986684836 0.1629881689457739 1 {M(Oxidation (M))|F}VW{M(Oxidation (M))|F} 4 -1 39.033 0 0 3.0746 0 0 672.2783070294937 0 672.2783070294937 0 32.043583675890744 0 0 0 1.2302046884880937 0 0 0 {M(Oxidation (M))|F}VW{M(Oxidation (M))|F} 3.0746 + + 57 NaN NaN 105403 NaN 17041 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20966 84.939 NaN 80525 35 0 18203 0.263 + 17931 MIPLWAGVL 9 39 500.2900425916633 NaN 0 500.2901916503906 PEAK HCD FTMS 0 0 0 20959 32871.06640625 0.6847656244278357 3 -0.081573486328125 7 Unmodified _MIPLWAGVL_ REV__tr|U7SUB6|U7SUB6_FUSNUFormate/nitritetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01175PE=3SV=1 5.230669730166228 0.26989974671959066 1 V 1 -1 6.9897 0 0 0.69997 0 0 131.09489930869034 765.3800446977461 896.4749440064365 0 0 0 0 0 0 0 0 0 V 0.69997 + + 1 + NaN NaN 91923.1 NaN 17042 3922 20959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20968 84.944 NaN 1788100 35 0 82490 0.326 -1 0 112 545.3168208601961 1088.6190887871921 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20967 2496208.75 0.6924126614653608 9 -0.26180267333984375 1 NaN NaN 1 Q{[QN]|[E{I|L}]|[KN]}KN 5 -1 13.46 0 0 1.2365 0 0 458.2725312300351 0 458.2725312300351 0 2.975694635544741 0 0 0 0.6989700043360187 0 0.3494850021680094 0 Q{[QN]|[E{I|L}]|[KN]}KN 1.2365 - 309 NaN NaN 348925.1 NaN 17043 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20969 84.948 NaN 911890 35 0 93834 0.262 -1 0 89 448.258728435355 894.50290393751 2 448.2590026855469 MULTI HCD FTMS 0 0 0 20967 812976.375 0.813041011760435 2 -0.05544281005859375 2 NaN NaN 1 QV{M(Oxidation (M))|F} 3 -1 9.5758 0 0 1.0705 0 0 502.2977772443375 0 502.2977772443375 0 -0.07264737521124687 -0.07264737521124687 0 0 0.5623343384664861 0 0 0 QV{M(Oxidation (M))|F} 1.0705 - 27 NaN NaN 220666.7 NaN 17044 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20970 84.952 NaN 679690 35 0 24259 0.261 + 30044 VFQQKTARR 9 110 567.3307443934895 1132.6469358537788 2 567.3311157226562 MULTI HCD FTMS 0 0 0 20967 496528.78125 0.33240375996149296 31 -0.75732421875 3 Unmodified _VFQQKTARR_ ENSG00000153064|ENST00000322953|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-4|BANK1 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.1565 0 0 967.5680306797539 0 967.5680306797539 0 0.8804562952784067 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1565 + + 633 + NaN NaN 187871.2 NaN 17045 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20971 84.955 NaN 1032100 35 0 369180 0.261 + 28404 TPFLYDLVM 9 77 557.7779456169287 1113.5413383006573 2 557.7784423828125 MULTI HCD FTMS 0 0 0 20967 694233.9375 0.8127928267690452 -2 0.0621795654296875 4 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 100.37149154755038 0.004254194004462789 1 {I|L}YD{I|L}V{M(Oxidation (M))|F} 6 3 70.878 0 0 6.3651 0 0 345.1673756330094 0 345.1673756330094 0 48.337811941574884 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + {I|L}YD{I|L}V{M(Oxidation (M))|F} 6.3651 + + 948 NaN NaN 238852.2 NaN 17046 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20972 84.958 NaN 738390 35 0 114310 0.261 + 22814 QYLLVTALY 9 54 542.3078124016469 1082.6010718700936 2 542.30810546875 MULTI HCD FTMS 0 0 0 20967 436258.28125 0.5352997813594976 2 -0.05544281005859375 5 Unmodified _QYLLVTALY_ ENSG00000165389|ENST00000298130|SPTSSA 81.89019881105858 0.005240739447516426 1 VTA{I|L}Y 5 4 74.196 0 0 6.8535 0 0 517.2896587115172 0 517.2896587115172 0 56.49288766643714 0 0 0 2.5 0 1.274227503252014 0 + VTA{I|L}Y 6.8535 + + 106 NaN NaN 203059.6 NaN 17047 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20973 84.962 NaN 407640 35 0 72082 0.261 -1 EMSTQKIVGM 10 79 578.2724265297281 1154.5303001262562 2 578.2725830078125 MULTI HCD FTMS 0 0 0 20967 174566.40625 0.48152875147629737 6 -0.1734466552734375 6 2 Oxidation (M) _EM(Oxidation (M))STQKIVGM(Oxidation (M))_ tr|U7SKZ6|U7SKZ6_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02005PE=3SV=1 17.11289562659939 0.35104376501799556 1 V{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5 -1 55.701 0 0 4.8246 0 0 587.2571888654312 0 587.2571888654312 0 37.73719058643536 0 0 0 1.9247425010840047 0 0 0 V{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 4.8246 - 203 NaN NaN 146059 NaN 17048 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20974 84.965 NaN 146980 35 0 15411 0.261 + 6257 FPFCPLLLT 9 59 525.7901099643465 NaN 0 525.779296875 PEAK HCD FTMS 0 0 0 20967 16781.95703125 0.5238979020150989 -1 0.02613067626953125 7 Unmodified _FPFCPLLLT_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 18.13498045792455 0.19991664011725976 1 {I|L} 1 8 15.797 0 0 1.5051 0 0 704.3393619191241 229.11940942935783 933.458771348482 0 0 0 0 0 0.8807196863200843 0 0 0 + {I|L} 1.5051 + + 30 + NaN NaN 105512.6 NaN 17049 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20975 84.968 NaN 310700 35 0 44390 0.261 + 19898 NYFETDISEL 10 63 615.7801829543419 1229.5458129754836 2 615.7809448242188 MULTI HCD FTMS 0 0 0 20967 43358.89453125 1 0 0 8 Unmodified _NYFETDISEL_ REV__ENSG00000123124|ENST00000517970|WWP1;REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF;REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF;REV__nc|ENSG00000123124|Q9H0M0-3|WWP1;REV__nc|ENSG00000123124|Q9H0M0-6|WWP1;REV__WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 7.945399516374404 0.4332474418965133 1 [YN]AW 4 -1 30.534 0 0 2.4834 0 0 0 692.2990227745648 692.2990227745648 7.245462655597095 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [YN]AW 2.4834 - 190 NaN NaN 127506.7 NaN 17050 3923 20967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20977 84.973 NaN 1054800 35 0 47015 0.327 -1 0 119 553.8301034429838 1105.6456539527676 2 553.830322265625 MULTI HCD FTMS 0 0 0 20976 703340 0.34150947415788113 25 -0.6133270263671875 1 NaN NaN 1 [{I|L}T]GV 4 -1 13.744 0 0 1.2431 0 0 0 732.4032516492512 732.4032516492512 1.5255303914902552 0 0 0 0 0.28872548999643577 1.154901959985743 0.23965182871044374 0 [{I|L}T]GV 1.2431 - 601 NaN NaN 248964.2 NaN 17051 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20978 84.978 NaN 510400 35 0 70382 0.261 + 22771 QYILFPLRF 9 73 598.8448885976039 1195.6752242620078 2 598.845703125 MULTI HCD FTMS 0 0 0 20976 227846.53125 0.026401154559705813 47 -1.1469192504882812 2 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 74.92900055777586 0.007493270374442853 1 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 9 0 + 49.944 0 0 4.1771 4.1771 80.485 0 0 0 0.9568378181977977 0.9568378181977977 0.9568378181977977 0.9568378181977977 0 1.8851518780601921 1.0969100130080565 0 0 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4.1771;4.097 +;- + 205 + NaN NaN 158532.9 NaN 17052 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20979 84.981 NaN 594690 35 0 96891 0.261 + 22721 QYDGIFYEF 9 72 591.2610304996275 1180.507508066055 2 591.261474609375 MULTI HCD FTMS 0 0 0 20976 287429.625 0.451400616999787 -1 0.02935791015625 3 Unmodified _QYDGIFYEF_ ENSG00000136783|ENST00000374767|NIPSNAP3A 96.11092074494114 0.00436583732602279 1 [YE]VGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 3 + 81.608 0 0 6.9129 6.9129 86.601 0 0 0 3.976949551052371 71.15024697793565 3.976949551052371 3.979400086720375 0 1.8494850021680094 0 1.4489700043360187 1.2302046884880937 [YE]VGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA]Q{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Q{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]N{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]VGQ{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA]Q{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YE]VG[AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Q{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YE]N{[VA]|[{I|L}G]}{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA][AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 6.9129;6.5759;6.3209;6.1717;5.5342;5.1971;5.0908;4.9421;4.7929;4.7537 -;-;-;-;-;-;-;-;-;- 821 NaN NaN 177284.4 NaN 17053 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20980 84.985 NaN 283940 35 0 19359 0.261 + 31376 VYAEIHSLL 9 80 522.7894282418927 1043.5643035505852 2 523.3029174804688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VYAEIHSLL_ REV__ENSG00000000457|ENST00000367771|SCYL3;REV__nc|ENSG00000000457|Q8IZE3|SCYL3 12.531546534597751 0.2520865569484384 1 {I|L}T{M(Oxidation (M))|F} 3 -1 20.802 0 0 1.9934 0 0 664.3528300171853 0 664.3528300171853 0 0.5411342943241237 0 0 0 0 0 0 0 {I|L}T{M(Oxidation (M))|F} 1.9934 - 152 + NaN NaN 125320.6 NaN 17054 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20981 84.988 NaN 122720 35 0 11415 0.261 + 34679 YPTSDILVI 9 51 510.78406065481767 1019.5535683764354 2 510.7845764160156 MULTI HCD FTMS 0 0 0 20976 66793.609375 0.9337577351412495 4 -0.1146240234375 5 Unmodified _YPTSDILVI_ REV__ENSG00000142937|ENST00000396651|RPS8;REV__ENST00000484599.1_1_1:45243341-45243407:+|nuORF 28.486842064014134 0.11819662193267319 1 {I|L}{I|L}V{I|L} 4 -1 33.66 0 0 3.3014 0 0 563.2216053693375 0 563.2216053693375 0 22.44972548463494 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}V{I|L} 3.3014 + + 54 NaN NaN 112679.3 NaN 17055 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20982 84.991 NaN 94623 35 0 8522.5 0.261 + 3941 EQAIDITK 8 52 459.2496525909755 916.484752248751 2 459.2498779296875 MULTI HCD FTMS 0 0 0 20976 23991.197265625 0.15566411913079975 4 -0.1146240234375 6 Unmodified _EQAIDITK_ REV__ENSG00000278311|ENST00000613102|GGNBP2;REV__nc|ENSG00000278311|Q9H3C7-3|GGNBP2 5.230669730166228 0.5342319408533849 1 Y 1 -1 5.5065 0 0 0.60083 0 0 621.3398070356635 129.05564294986564 750.3954499855291 0 0 0 0 0 0.4247425010840047 0 0 0 Y 0.60083 - 7 + NaN NaN 89626.6 NaN 17056 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20983 84.995 NaN 44766 35 0 6672.5 0.261 -1 DLLWWSWMR 9 32 436.8789934266012 NaN 0 436.87884521484375 PEAK HCD FTMS 0 0 0 20976 13497.474609375 0.36625199099334865 1 -0.02608489990234375 7 Oxidation (M) _DLLWWSWM(Oxidation (M))R_ ENST00000219281.7_1_16:58035341-58035434:+|nuORF 1.0714618166137932 0.2900546878344058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96536.1 NaN 17057 3924 20976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20985 84.999 NaN 331830 35 0 18646 0.327 + 21355 PTKARRPS 8 73 456.771991612871 911.529430292542 2 456.7722473144531 MULTI HCD FTMS 0 0 0 20984 357351.125 0.38401689840972936 6 -0.1769256591796875 1 Unmodified _PTKARRPS_ ENSG00000250374|ENST00000503032|TRIM75 7.910154910731844 0.5302565402355366 1 A 1 7 8.2268 0 0 0.90253 0 0 61.05327330329232 776.4274386041624 837.4807119074547 0 0 0 0 0 0.4247425010840047 0 0 0 + A 0.90253 + + 11 + NaN NaN 127189.4 NaN 17058 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20986 85.004 NaN 980820 35 0 169150 0.261 + 27279 SYQDFFEAI 9 63 560.2536199032421 1118.4926868732841 2 560.25390625 MULTI HCD FTMS 0 0 0 20984 489062.21875 0.1917375430313201 -5 0.147064208984375 2 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 86.33184430468982 0.004622086694044132 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 6 3 76.305 0 0 6.8221 0 0 378.15330702949376 0 378.15330702949376 0 39.47235328539264 0 0 0 2.2302046884880937 0 1.524227503252014 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 6.8221 + + 307 NaN NaN 232313.5 NaN 17059 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20987 85.007 NaN 262760 35 0 10756 0.261 + 8076 GILWRVLFF 9 92 575.8416492574281 1149.6687455816561 2 575.8419189453125 MULTI HCD FTMS 0 0 0 20984 232801.203125 0.25338739261380383 22 -0.5383224487304688 3 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F}{I|L}V 3 7 16.198 0 0 1.4089 0 0 166.1902044104392 621.2337740533811 787.4239784638203 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}V 1.4089 - 46 + NaN NaN 125292.3 NaN 17060 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20988 85.011 NaN 606240 35 0 79306 0.261 + 4976 FAVTLETVL 9 59 496.78660711304826 991.5586612928965 2 496.78717041015625 MULTI HCD FTMS 0 0 0 20984 301378.34375 0.7224282338361285 -4 0.11762237548828125 4 Unmodified _FAVTLETVL_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2 88.90359156742426 0.00455469703666567 1 {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L} 9 0 + 76.693 0 0 7.7346 7.7346 94.794 0 0 0 3.65279269351241 48.81228130928562 3.65279269351241 27.730686584013952 0 2.2302046884880937 0 1.579689690656103 0 + + {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L};{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}SETV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}VTT{[QN]|[E{I|L}]|[KN]}V{I|L};{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[DA]|[EG]}{I|L} 7.7346;4.9379;3.573;2.6029 +;-;-;- + 1097 NaN NaN 170851.5 NaN 17061 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20989 85.017 NaN 137970 35 0 16653 0.261 + 1447 AYSILWDLKF 10 51 628.3388482007408 1254.6631434682815 2 628.3392333984375 MULTI HCD FTMS 0 0 0 20984 90962.0234375 0.6993009836464144 1 -0.0328369140625 5 Unmodified _AYSILWDLKF_ ENSG00000148248|ENST00000371989|SURF4;ENST00000465565.1_1_9:136230607-136232949:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 15.248480904072842 0.3684828712757339 1 W{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 5 5 33.768 0 0 2.6914 0 0 547.3023548810562 0 547.3023548810562 0 29.16386562212267 0 0 0 0.8807196863200843 0 0.4247425010840047 0 + W{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 2.6914 + + 18 NaN NaN 98522.8 NaN 17062 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20990 85.021 NaN 235130 35 0 16691 0.261 + 22898 QYPVIIHLIW 10 67 641.3712218821611 1280.727890831122 2 641.3712768554688 MULTI HCD FTMS 0 0 0 20984 100390.4921875 0.5197273389480138 -8 0.20195770263671875 6 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 42.09456458481378 0.12723037877173987 1 {I|L}{I|L}[VP]SW 6 7 39.456 0 0 3.0807 0 0 567.3157826154312 0 567.3157826154312 0 20.30893995913352 0 0 0 1.3252574989159953 0 0.3807196863200844 0 {I|L}{I|L}[VP]SW 3.0807 - 243 NaN NaN 114252.1 NaN 17063 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20991 85.024 NaN 331590 35 0 25034 0.261 + 19782 NYAWVYYHL 9 63 614.7943040834457 1227.5740552336913 2 614.7947387695312 MULTI HCD FTMS 0 0 0 20984 93892.9375 0.46992969762109915 25 -0.626708984375 7 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 31.26834338654808 0.10542797264966089 1 [YN]AWV{[WN]|[YH]}Y{I|L} 9 2 + 55.913 0 0 4.5548 4.5548 82.124 0 0 0 21.453650195120836 41.47608139917317 21.453650195120836 3.187587626244124 0 1.3807196863200843 1.3979400086720375 0 0.3054621874040891 [YN]AWV{[WN]|[YH]}Y{I|L};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[PG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][HQ]{M(Oxidation (M))|F}VY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][{M(Oxidation (M))|F}V][HQ]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.5548;4.2951;3.8046;3.6426;2.153;1.3165;0.9945 -;-;-;-;-;-;- 275 NaN NaN 125954.5 NaN 17064 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20992 85.027 NaN 251460 35 0 21862 0.261 + -1 FSSQRRRW 8 61 582.8051436978249 1163.5957344624496 2 582.8049926757812 MULTI HCD FTMS 0 0 0 20984 105190.578125 0.01870489507116543 26 -0.6395416259765625 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FSSQRRRW_ REV__ENST00000426174.6_1_12:124171384-124171462:+|nuORF 16.942295170755138 0.46913822049235215 1 {I|L}T{I|L}W 4 -1 53.175 0 0 4.5699 0 0 632.292821207061 0 632.292821207061 0 42.1585404819125 0 0 0 2 0 0.4247425010840047 0 {I|L}T{I|L}W 4.5699 - 204 NaN NaN 116188.2 NaN 17065 3925 20984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20994 85.032 NaN 644480 35 0 124910 0.327 -1 LMSLIINTF 9 65 534.2940624712198 1066.5735720092396 2 534.7847290039062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 27.628801355627647 0.12213550946336599 1 YAP{I|L}EPT{M(Oxidation (M))|F} 8 -1 39.449 0 0 3.6987 0 0 130.11403014564183 0 130.11403014564183 0 11.657913024158688 0 0 0 0.3807196863200844 0 0.6237125054200234 0 YAP{I|L}EPT{M(Oxidation (M))|F} 3.6987 - 649 + NaN NaN 173508 NaN 17066 3926 20993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20995 85.037 NaN 277500 35 0 37095 0.261 -1 0 58 585.8127137264215 1169.610874519643 2 585.8131713867188 MULTI HCD FTMS 0 0 0 20993 118813.7890625 0.25509096188712665 19 -0.4767913818359375 2 NaN NaN 1 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 54.425 0 0 4.6532 0 0 517.2538929669937 0 517.2538929669937 0 38.22682509756042 0 0 0 1.566901560044258 0 0 0.3807196863200844 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.6532 - 217 NaN NaN 123273.6 NaN 17067 3926 20993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20996 85.04 NaN 172130 35 0 16673 0.261 + 3936 EPVYIDLTL 9 61 531.7895268969046 1061.564500860609 2 531.7898559570312 MULTI HCD FTMS 0 0 0 20993 109354.890625 0.1318842679868574 -7 0.2059783935546875 3 Unmodified _EPVYIDLTL_ ENSG00000163811|ENST00000407426|WDR43 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}VT{I|L} 4 6 39.227 0 0 3.6952 0 0 583.3000355451187 0 583.3000355451187 0 23.742209500285014 0 0 0 0.8252574989159953 0 0.3807196863200844 0 {M(Oxidation (M))|F}VT{I|L} 3.6952 - 106 NaN NaN 104008.6 NaN 17068 3926 20993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20997 85.044 NaN 132350 35 0 9091.4 0.261 + 297 AFMYRTIL 8 45 507.77772541601047 1013.540897898821 2 507.7781982421875 MULTI HCD FTMS 0 0 0 20993 73134.5625 0.9096955619852171 -2 0.05892181396484375 4 Unmodified _AFMYRTIL_ ENSG00000111817|ENST00000644252|DSE 12.531546534597751 0.5015908124873912 1 VS{I|L} 3 7 24.425 0 0 2.4098 0 0 696.3670537440661 0 696.3670537440661 0 9.820618910682484 0 0 0 0.4247425010840047 0 0 0 VS{I|L} 2.4098 - 10 NaN NaN 100750 NaN 17069 3926 20993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20998 85.047 NaN 181400 35 0 37302 0.261 + -1 CHCHCRCRC 9 41 617.717001121829 1233.4194493104578 2 617.7177734375 MULTI HCD FTMS 0 0 0 20993 43229.5234375 0.9506389658484911 -1 0.0328369140625 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))HCHCRC(Carbamidomethyl (C))RC_ REV__ENST00000358901.10_1_9:35072401-35072665:-|nuORF 0.5247636613948944 0.34703895399870666 1 Q 1 -1 3.9794 0 0 0.32263 0 0 668.2127880513457 434.12729822330317 1102.340086274649 0 0 0 0 0 0 0 0 0 Q 0.32263 - 9 + NaN NaN 111057.8 NaN 17070 3926 20993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 20999 85.05 NaN 88153 35 0 5838.9 0.264 + 14274 LCVNGHFF 8 50 468.7235198037156 935.4324866742312 2 468.7237243652344 MULTI HCD FTMS 0 0 0 20993 18617.484375 0.2995488737682459 3 -0.08516693115234375 6 Unmodified _LCVNGHFF_ ENSG00000135596|ENST00000358807|MICAL1;ENST00000456101.6_1_6:109766698-109772967:-|nuORF;ENST00000465904.1_1_6:109767733-109768483:-|nuORF;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.5612 0 0 770.3540087463 0 770.3540087463 0 12.129843661361406 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5612 + + 5 + NaN NaN 97938.8 NaN 17071 3926 20993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21001 85.055 NaN 705500 35 0 141100 0.326 -1 LMSLIINTF 9 61 534.2940624712198 1066.5735720092396 2 534.78466796875 MULTI HCD FTMS 0 0 0 21000 16159 0.20394189670562693 15 -0.422271728515625 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 21.536976647645854 0.1742816388551942 1 {I|L}E{I|L}PAK{M(Oxidation (M))|F} 7 -1 40.398 0 0 3.7877 0 0 250.09477431465 0 250.09477431465 0 8.914412723804546 0 0 0 0 0 0.6989700043360187 0 {I|L}E{I|L}PAK{M(Oxidation (M))|F} 3.7877 - 491 NaN NaN 196186.2 NaN 17072 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21002 85.06 NaN 243760 35 0 29736 0.261 + 4618 EYLYFFRVL 9 61 625.3341807605485 1248.653808587897 2 625.3344116210938 MULTI HCD FTMS 0 0 0 21000 113411.703125 0.4513004450735072 2 -0.062255859375 2 Unmodified _EYLYFFRVL_ ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF 103.35351024395868 0.004027461563756449 1 [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 9 0 + 91.014 0 0 7.289 7.289 95.91 0 0 0 23.416375079047498 16.478174818886373 16.478174818886373 91.01396253818521 0 2.9247425010840047 0 2.6237125054200234 0 + + [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 7.289 + + 170 NaN NaN 123804.2 NaN 17073 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21003 85.063 NaN 230460 35 0 16542 0.261 + -1 WSDRQMMAF 9 57 602.2516290573478 1202.4887051814956 2 602.2520751953125 MULTI HCD FTMS 0 0 0 21000 92425.5234375 0.7373869273003211 1 -0.0327911376953125 3 2 Oxidation (M) _WSDRQM(Oxidation (M))M(Oxidation (M))AF_ REV__ENSG00000109072|ENST00000226218|VTN 15.847184025352803 0.2234401846867398 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}D 3 -1 23.468 0 0 1.9516 0 0 0 811.3282492090924 811.3282492090924 7.481880270062007 0 0 0 0 0 2 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}D 1.9516 + + 102 NaN NaN 133071.9 NaN 17074 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21004 85.066 NaN 142840 35 0 20570 0.261 + 22660 QWPEGLKFLF 10 43 632.8395515751334 1263.6645502170668 2 632.8399658203125 MULTI HCD FTMS 0 0 0 21000 48239.75390625 0.3336341054691413 3 -0.09514617919921875 4 Unmodified _QWPEGLKFLF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 22.736283301280096 0.29844449404982915 1 [WQ][HA]{[VA]|[{I|L}G]}K 7 5 9.2251 0 0 0.73003 0 0 0 440.2165271059918 440.2165271059918 2.2353819582675545 0 0 0 0 0.5 1.3979400086720375 0 0 [WQ][HA]{[VA]|[{I|L}G]}K 0.73003 - 15 NaN NaN 98246.3 NaN 17075 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21005 85.07 NaN 268460 35 0 52059 0.263 + 31927 VYPADVVLF 9 53 511.78126633903776 1021.5479797448755 2 511.78131103515625 MULTI HCD FTMS 0 0 0 21000 67387.765625 0.4027887086987467 -3 0.0818328857421875 5 Unmodified _VYPADVVLF_ ENSG00000130717|ENST00000372215|UCK1;ENSG00000143179|ENST00000367879|UCK2;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-2|UCK1;nc|ENSG00000130717|Q9HA47-3|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 60.38955033654506 0.017036522530421875 1 [YV]D[PA]VV{I|L}{M(Oxidation (M))|F} 9 2 + 67.572 0 0 6.6147 6.6147 85.572 0 0 0 16.422815857436532 16.422815857436532 16.422815857436532 3.0102999566398125 0 2.25 1.3979400086720375 0 0 [YV]D[PA]VV{I|L}{M(Oxidation (M))|F};[YV][PA]DVV{I|L}{M(Oxidation (M))|F};[YV][PS][TP]V{I|L}{M(Oxidation (M))|F};[YV]{[QV]|[N{I|L}]|[RA]|[KV]}{[WT]|[RM]}{I|L}N 6.6147;6.32;5.007;2.1859 -;+;-;- + 210 NaN NaN 127770.7 NaN 17076 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21006 85.073 NaN 203870 35 0 26111 0.261 + 35694 YYLDAVVSF 9 48 538.7685395922941 1075.5225262513882 2 538.7694702148438 MULTI HCD FTMS 0 0 0 21000 9263.6640625 0.014050121633928088 13 -0.37326812744140625 6 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 19.256988751693697 0.19398022840297344 1 HVS{M(Oxidation (M))|F} 4 6 37.18 0 0 3.457 0 0 587.2943592755875 0 587.2943592755875 0 22.57638152291939 0 0 0 0.8252574989159953 0 0 0 HVS{M(Oxidation (M))|F} 3.457 - 79 NaN NaN 114294.8 NaN 17077 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21007 85.076 NaN 78106 35 0 20884 0.261 + 29665 VARRKTQA 8 24 465.2852119357903 928.5558709383806 2 465.28521728515625 MULTI HCD FTMS 0 0 0 21000 35396.13671875 0.12438432483226106 7 -0.21660614013671875 7 Unmodified _VARRKTQA_ REV__ENST00000541027.5_1_11:73689766-73691071:-|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110010 NaN 17078 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21008 85.08 NaN 205210 35 0 24228 0.261 + 14557 LFHRMLQL 8 61 529.3017306730245 1056.588908412849 2 529.3028564453125 MULTI HCD FTMS 0 0 0 21000 44407.40625 0.40648229413091036 -3 0.0818328857421875 8 Unmodified _LFHRMLQL_ REV__ENST00000488564.2_1_7:27881117-27881465:+|nuORF 12.531546534597751 0.5015908124873912 1 {M(Oxidation (M))|F}D{I|L}Q{I|L} 5 -1 29.781 0 0 2.8186 0 0 422.28950698066564 0 422.28950698066564 0 13.661968799114842 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}D{I|L}Q{I|L} 2.8186 - 261 NaN NaN 114930.7 NaN 17079 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21009 85.083 NaN 405290 35 0 27322 0.261 + -1 VYSTLRCM 8 94 523.2429267750205 1044.4713006168408 2 523.2437744140625 MULTI HCD FTMS 0 0 0 21000 32226.875 0.5777824155552925 -3 0.0818328857421875 9 Carbamidomethyl (C),Oxidation (M) _VYSTLRC(Carbamidomethyl (C))M(Oxidation (M))_ REV__nc|ENSG00000293504|Q99463|NPY6R 9.347437153973935 0.5250182646323369 1 C(Carbamidomethyl (C)){I|L}T{M(Oxidation (M))|F} 4 -1 35.433 0 0 3.3924 0 0 505.2631092755875 0 505.2631092755875 0 5.880456295278407 0 0 0 0 0 0.3494850021680094 0 C(Carbamidomethyl (C)){I|L}T{M(Oxidation (M))|F} 3.3924 - 131 NaN NaN 157853.1 NaN 17080 3927 21000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21011 85.088 NaN 1484800 35 0 56401 0.326 + 9986 IEKLKERSS 9 120 545.3168208601961 1088.6190887871921 2 545.317138671875 MULTI HCD FTMS 0 0 0 21010 1591094.625 0.44134692819239585 14 -0.3894805908203125 1 Unmodified _IEKLKERSS_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 7.608950283845883 0.29333554423920943 1 KQ{[QN]|[E{I|L}]|[KN]}KN 6 7 12.941 0 0 1.1887 0 0 330.16749419951884 0 330.16749419951884 0 0.9510685949825977 0 0 0 0.6861818737241735 0 0.3252574989159953 0 KQ{[QN]|[E{I|L}]|[KN]}KN 1.1887 - 481 NaN NaN 310552.3 NaN 17081 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21012 85.092 NaN 486930 35 0 83512 0.261 -1 LYPVTVNMLF 10 56 606.8200580829238 1211.6255632326474 2 606.8206787109375 MULTI HCD FTMS 0 0 0 21010 183751.515625 0.762679803847636 3 -0.08838653564453125 2 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 39.94969957227396 0.1458432724694501 1 [Y{I|L}]PV{[TV]|[{I|L}S]}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 -1 + 63.333 0 0 5.2271 5.2271 91.843 0 0 0 25.764837301042718 48.57168384046304 25.764837301042718 63.33281569033012 0 1.242992819099939 2 0.4247425010840047 0 [Y{I|L}]PV{[TV]|[{I|L}S]}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.2271 + + 142 NaN NaN 149182.2 NaN 17082 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21013 85.096 NaN 478120 35 0 139620 0.261 -1 0 85 562.3440213297208 1122.6734897262415 2 562.344482421875 MULTI HCD FTMS 0 0 0 21010 107664.1328125 0.12474763536354266 29 -0.6850128173828125 3 NaN NaN 1 AE 2 -1 9.464 0 0 0.84298 0 0 132.27886929641335 787.3042653953914 919.5831346918048 0 0 0 0 0 0 0 0 0 AE 0.84298 - 80 + NaN NaN 155920.8 NaN 17083 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21014 85.099 NaN 178900 35 0 40675 0.261 + 5989 FPDQVQDLVF 10 39 604.3031243520578 1206.5916957709155 2 604.3032836914062 MULTI HCD FTMS 0 0 0 21010 76311.859375 0.3252036618346262 -8 0.23560333251953125 4 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 10.150570793230772 0.4161670024087991 1 V{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1523 0 0 942.44203544422 0 942.44203544422 0 11.505149978319906 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.1523 + + 16 NaN NaN 109903.9 NaN 17084 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21015 85.103 NaN 186410 35 0 17112 0.262 + 27782 TAVIWEPVL 9 46 514.2941821252697 1026.5738113173393 2 514.2943115234375 MULTI HCD FTMS 0 0 0 21010 48243.24609375 0.48279836929535425 -2 0.05570220947265625 5 Unmodified _TAVIWEPVL_ ENSG00000262246|ENST00000251166|CORO7;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000574849.1_1_16:4407825-4408472:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4407825-4408182:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-3|CORO7;nc|ENSG00000262246|P57737-4|CORO7 29.081581746732265 0.1154664336125038 1 {I|L}WE[VP]{I|L} 6 3 40.635 0 0 3.9583 0 0 271.1539784162125 0 271.1539784162125 0 25.228787452803374 0 0 0 2 0 0 0 + {I|L}WE[VP]{I|L} 3.9583 + + 104 NaN NaN 107859 NaN 17085 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21016 85.106 NaN 116340 35 0 14476 0.261 + 20038 NYIIGFELFK 10 58 622.3378648047427 NaN 0 622.3190307617188 PEAK HCD FTMS 0 0 0 21010 19026.66015625 0.5487745247707762 -2 0.05570220947265625 6 Unmodified _NYIIGFELFK_ ENSG00000077274|ENST00000324068|CAPN6 6.723162845929126 0.3344301934401713 1 {I|L} 1 9 6.9897 0 0 0.56248 0 0 852.4713706233541 274.08347498111567 1126.5548456044698 0 0 0 0 0 0 0 0 0 + {I|L} 0.56248 + + 26 + NaN NaN 106220 NaN 17086 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21017 85.109 NaN 150570 35 0 11308 0.263 + -1 AYLTCFMEETF 11 49 476.5335013154382 NaN 0 476.6657409667969 PEAK HCD FTMS 0 0 0 21010 24745.892578125 1 0 0 7 Carbamidomethyl (C),Oxidation (M) _AYLTC(Carbamidomethyl (C))FM(Oxidation (M))EETF_ REV__tr|U7T5S7|U7T5S7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00069PE=4SV=1 10.315234532428624 0.31285879373174325 1 T 1 -1 5.9691 0 0 0.62763 0 0 684.925601408417 162.0557802789672 846.9813816873842 0 0 0 0 0 0 0 0.3494850021680094 0 T 0.62763 + + 16 + NaN NaN 105097.9 NaN 17087 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21018 85.113 NaN 93512 35 0 24910 0.261 + 18055 MLTSSQSF 8 27 450.71058371435413 NaN 0 450.7106018066406 PEAK HCD FTMS 0 0 0 21010 19761.673828125 0.3530030833936966 -10 0.27442169189453125 8 Unmodified _MLTSSQSF_ REV__ENSG00000105136|ENST00000221735|ZNF419;REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF;REV__nc|ENSG00000105136|Q96HQ0-2|ZNF419;REV__nc|ENSG00000105136|Q96HQ0-3|ZNF419;REV__nc|ENSG00000105136|Q96HQ0-4|ZNF419;REV__nc|ENSG00000105136|Q96HQ0-5|ZNF419;REV__nc|ENSG00000105136|Q96HQ0-6|ZNF419 4.75600775471527 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.5119 0 0 589.4432488722646 146.90601526431877 736.3492641365833 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.5119 - 1 + NaN NaN 95318.6 NaN 17088 3928 21010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21020 85.118 NaN 1082100 35 0 39785 0.327 -1 0 121 553.8301034429838 1105.6456539527676 2 553.8304443359375 MULTI HCD FTMS 0 0 0 21019 748427.0625 0.3634016728181287 30 -0.7077865600585938 1 NaN NaN 1 [{I|L}T]GV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RV]D 9 -1 14.08 0 0 1.2735 0 0 0 102.05651323766406 102.05651323766406 3.4809983409398004 0 0 0 0 0.5356668758921829 1.0457574905606752 0.8539171939081173 0.5 [{I|L}T]GV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RV]D 1.2735 - 541 NaN NaN 267931.7 NaN 17089 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21021 85.122 NaN 572880 35 0 201560 0.261 + 28405 TPFLYDLVM 9 64 557.7779456169287 1113.5413383006573 2 557.7782592773438 MULTI HCD FTMS 0 0 0 21019 275794.34375 0.3228935552628126 4 -0.12163543701171875 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 85.35673624503755 0.00464763827098139 1 T{I|L}{I|L}{[ET]|[MV]}D{I|L}V{M(Oxidation (M))|F} 9 4 70.869 0 0 6.3643 0 0 63.99761935477597 0 63.99761935477597 0 59.186296826174996 0 0 0 2.305462187404089 0 1.1237125054200234 0 T{I|L}{I|L}{[ET]|[MV]}D{I|L}V{M(Oxidation (M))|F} 6.3643 - 373 + NaN NaN 181801.8 NaN 17090 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21022 85.126 NaN 719160 35 0 23107 0.261 -1 0 119 567.3307443934895 1132.6469358537788 2 567.3309936523438 MULTI HCD FTMS 0 0 0 21019 310071.5625 0.2075790107728726 37 -0.8774185180664062 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2342 0 0 967.5681374912773 0 967.5681374912773 0 0.4845500650402812 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2342 - 742 + NaN NaN 192043.4 NaN 17091 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21023 85.129 NaN 1252400 35 0 123260 0.261 -1 0 109 582.7998357176308 1163.5851185020615 2 582.7999267578125 MULTI HCD FTMS 0 0 0 21019 398735.53125 0.11713111942343842 -5 0.1440887451171875 4 NaN NaN 1 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 66.444 0 0 5.7103 0 0 0 162.05503657732598 162.05503657732598 31.52127146845345 0 0 0 0 1.8539171939081172 1.3010299956639813 1.4604093769761874 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 5.7103 - 2481 NaN NaN 278642.8 NaN 17092 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21024 85.132 NaN 631200 35 0 44707 0.261 + 392 AKAFNFIRET 10 94 598.8268318093537 1195.6391106855074 2 598.8450317382812 MULTI HCD FTMS 0 0 0 21019 30116.599609375 0.21675443565264543 -5 0.1440887451171875 5 Unmodified _AKAFNFIRET_ REV__tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1 29.081581746732265 0.240155558137004 1 [Y{I|L}]{[TV]|[{I|L}S]}TSVD[VS]{I|L} 11 -1 + 35.216 0 0 2.9454 2.9454 80.878 0 0 0 2.0848478805837516 9.86377057142342 2.0848478805837516 3.966215714819249 0 0.5629529932484498 1.3010299956639813 0.28872548999643577 0 [Y{I|L}]{[TV]|[{I|L}S]}TSVD[VS]{I|L};[Y{I|L}][RV]{M(Oxidation (M))|F}{[CP]|[EA]}W{I|L};[Y{I|L}][RV]{M(Oxidation (M))|F}GQ[NS]{I|L};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[Y{I|L}][RV]{M(Oxidation (M))|F}GQG[SG]{I|L};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}AQ[WK];[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}AQG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[TV]|[{I|L}S]}[Y{I|L}]TSVD[VS]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[HV]Q[NS]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[HV]QG[SG]{I|L} 2.9454;2.6136;2.1483;2.0644;1.9915;1.9492;1.7887;1.7762;1.7493;1.5924 -;-;-;-;-;-;-;-;-;- 1280 NaN NaN 178075 NaN 17093 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21025 85.135 NaN 403920 35 0 40862 0.261 -1 TLCSLSEAKM 10 85 578.2724265297281 1154.5303001262562 2 578.2723388671875 MULTI HCD FTMS 0 0 0 21019 109532.2265625 0.30213669076469035 12 -0.32729339599609375 6 Carbamidomethyl (C),Oxidation (M) _TLC(Carbamidomethyl (C))SLSEAKM(Oxidation (M))_ ENST00000470191.5_1_9:15845666-15971831:+|nuORF 18.1463463914782 0.3413772152514074 1 ST{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 6 -1 55.895 0 0 4.8414 0 0 498.24510390449376 0 498.24510390449376 0 8.716211412043705 0 0 0 1.4247425010840047 0 0.28872548999643577 0 ST{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 4.8414 - 570 NaN NaN 139738.5 NaN 17094 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21026 85.139 NaN 283940 35 0 29527 0.261 + 22815 QYLLVTALY 9 58 542.3078124016469 1082.6010718700936 2 542.3080444335938 MULTI HCD FTMS 0 0 0 21019 63127.00390625 0.07745840673115194 8 -0.23274993896484375 7 Unmodified _QYLLVTALY_ ENSG00000165389|ENST00000298130|SPTSSA 22.736283301280096 0.1639198954644489 1 TA{I|L}Y 4 5 45.165 0 0 4.1719 0 0 616.3589718296774 0 616.3589718296774 0 37.20236600603002 0 0 0 1.774227503252014 0 0 0 + TA{I|L}Y 4.1719 + + 120 NaN NaN 123478.2 NaN 17095 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21027 85.142 NaN 121300 35 0 11022 0.261 -1 MPLSEDFVWM 10 53 635.7773090412146 1269.5400651492291 2 635.7779541015625 MULTI HCD FTMS 0 0 0 21019 31769.818359375 0.11167975238160104 24 -0.5572586059570312 8 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 10.073929032068715 0.4168838835836452 1 V{[MG]|[TS]}E{I|L}QEN 8 -1 34.373 0 0 2.7075 0 0 351.12437636543126 0 351.12437636543126 0 13.404112767164733 0 0 0 0.5 0 0.4247425010840047 0 V{[MG]|[TS]}E{I|L}QEN 2.7075 - 158 NaN NaN 99724.2 NaN 17096 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21028 85.145 NaN 130350 35 0 12041 0.261 + 11026 IYERLFCWI 9 61 621.8204345703125 NaN 0 621.8204345703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _IYERLFCWI_ ENSG00000176658|ENST00000318217|MYO1D 8.155526934196011 0.2557262968844962 1 {I|L} 1 8 6.9897 0 0 0.56295 0 0 851.4363189435561 274.0828035943969 1125.519122537953 0 0 0 0 0 0 0 0 0 + {I|L} 0.56295 + + 39 + NaN NaN 102620.7 NaN 17097 3929 21019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21030 85.15 NaN 3136700 35 0 559700 0.327 + 27280 SYQDFFEAI 9 86 560.2536199032421 1118.4926868732841 2 560.2545166015625 MULTI HCD FTMS 0 0 0 21029 2550685.75 1 0 0 1 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 140.63315402491853 1.8728231636916273E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 9 0 + 92.22 0 0 8.245 8.245 92.953 0 0 0 3.2568864632742844 70.96069699644858 3.2568864632742844 10.325834421237516 0 2.7302046884880937 0 1.9361818737241734 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}EA{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}EA{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}EA{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}EA{I|L}{M(Oxidation (M))|F};[PG]{I|L}[DC]{[CA]|SS}QEA{I|L};[PG]{I|L}[NP]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))M]A{I|L} 8.245;7.3219;7.1093;6.0685;5.8953;4.7577;4.642;3.3312;2.8779;2.6921 +;-;-;-;-;-;-;-;-;- + 1579 NaN NaN 557863.8 NaN 17098 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21031 85.155 NaN 1800700 35 0 101410 0.261 + 22722 QYDGIFYEF 9 104 591.2610304996275 1180.507508066055 2 591.2613525390625 MULTI HCD FTMS 0 0 0 21029 313193.96875 0.49186283680522497 5 -0.14423370361328125 2 Unmodified _QYDGIFYEF_ ENSG00000136783|ENST00000374767|NIPSNAP3A 69.10491478415734 0.009377850133389008 1 {NN|[MP]|[D{I|L}]|[EV]}Q[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 4 + 71.722 0 0 6.0755 6.0755 85.853 0 0 0 13.981581701273598 0.5618438372588912 0.5618438372588912 5.8927186071611715 0 1.610924374808178 1.6989700043360187 0.6747425010840047 1.622363747448347 {NN|[MP]|[D{I|L}]|[EV]}Q[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[AG][YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[YG]PNVE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[DN]{M(Oxidation (M))|F}VVMDN;{NN|[MP]|[D{I|L}]|[EV]}YG[AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[DN]T[KC]PE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YGQPNVE{M(Oxidation (M))|F};[Q{I|L}]D[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 6.0755;5.5763;5.2955;4.8936;4.823;4.7963;4.607;4.4593;4.3944;4.2802 -;-;-;-;-;-;-;-;-;- 9363 NaN NaN 355105.4 NaN 17099 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21032 85.158 NaN 606910 35 0 37427 0.261 + -1 CDLRWCCC 8 104 586.7085353129594 1171.4025176927187 2 586.7090454101562 MULTI HCD FTMS 0 0 0 21029 267978.78125 1 0 0 3 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))DLRWC(Carbamidomethyl (C))C(Carbamidomethyl (C))C_ REV__ENST00000417647.6_1_5:140027400-140027472:+|nuORF 2.577480529830294 0.5381683276125971 1 {I|L}{M(Oxidation (M))|F}[NP]HNW{I|L} 8 -1 24.452 0 0 2.0874 0 0 131.88363088526404 0 131.88363088526404 0 0.3171830909637485 0 0 0 0.21346799108044046 0 0 0.5941876774005248 {I|L}{M(Oxidation (M))|F}[NP]HNW{I|L} 2.0874 - 1141 + NaN NaN 171468.6 NaN 17100 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21033 85.161 NaN 240230 35 0 10690 0.261 + -1 LGLSRRLFF 9 89 575.8422855347827 NaN 0 575.8418579101562 PEAK HCD FTMS 0 0 0 21029 91531.140625 0.367555847944135 -2 0.06235504150390625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGLSRRLFF_ REV__ENST00000352410.8_1_15:75190564-75190915:+|nuORF 7.910154910731844 0.25691533546754686 1 {M(Oxidation (M))|F}{I|L}V 3 -1 13.812 0 0 1.2014 0 0 166.18995970763427 621.2375582330686 787.427517940703 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}V 1.2014 - 42 + NaN NaN 128506.7 NaN 17101 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21034 85.165 NaN 84721 35 0 4642.1 0.263 + 23707 RQPRITAA 8 50 456.771991612871 911.529430292542 2 456.7723083496094 MULTI HCD FTMS 0 0 0 21029 71121.6171875 0.07642875852770255 11 -0.294403076171875 5 Unmodified _RQPRITAA_ ENST00000493668.1_1_X:9866192-9900301:+|nuORF 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.437 0 0 746.4513643519155 0 746.4513643519155 0 0.8804562952784067 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.437 - 18 + NaN NaN 93995 NaN 17102 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21035 85.168 NaN 385340 35 0 21360 0.261 -1 0 82 523.3033580926119 1044.5921632520237 2 523.3037719726562 MULTI HCD FTMS 0 0 0 21029 194522.9375 1 0 0 6 NaN NaN 1 [YV][VG]SC(Carbamidomethyl (C)){I|L}T 8 -1 29.658 0 0 2.8392 0 0 0 162.13191444118164 162.13191444118164 5.2726570743408985 0 0 0 0 0 1.6989700043360187 0.3494850021680094 0 [YV][VG]SC(Carbamidomethyl (C)){I|L}T 2.8392 - 172 NaN NaN 145544 NaN 17103 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21036 85.171 NaN 245880 35 0 38893 0.261 + 2477 DRPRATWI 8 75 507.77772541601047 1013.540897898821 2 507.7775573730469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _DRPRATWI_ sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1 26.88365393820708 0.39599352634412927 1 TVS{I|L} 4 7 46.983 0 0 4.6355 0 0 595.321092674025 0 595.321092674025 0 18.645322533652635 0 0 0 1.0752574989159953 0 0.5796896906561032 0 TVS{I|L} 4.6355 - 115 NaN NaN 136444.8 NaN 17104 3930 21029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21038 85.176 NaN 2438100 35 0 161470 0.327 + 22723 QYDGIFYEF 9 109 591.2610304996275 1180.507508066055 2 591.2774658203125 MULTI HCD FTMS 0 0 0 21037 229267.734375 0.3600589074804599 6 -0.173828125 1 Unmodified _QYDGIFYEF_ ENSG00000136783|ENST00000374767|NIPSNAP3A 62.57269311338072 0.013982455292112035 1 {NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 4 + 61.635 0 0 5.2211 5.2211 81.865 0 0 0 0.2021045874316414 -12.561376381306822 -12.561376381306822 0.33612834394972424 0 1.9489700043360187 1.6989700043360187 0.9634679910804405 0.555462187404089 {NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};EVYGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YG[AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[AG][YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}QS{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PVC(Carbamidomethyl (C));{NN|[MP]|[D{I|L}]|[EV]}YGQPNVE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[YG]PNVE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[DN]T[KC]PE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[DN]{M(Oxidation (M))|F}VVMDN 5.2211;5.1926;5.1401;4.441;4.3601;4.1357;4.1029;4.0219;3.9867;3.969 -;-;-;-;-;-;-;-;-;- 11676 NaN NaN 469990.3 NaN 17105 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21039 85.181 NaN 807170 35 0 104100 0.262 + 4977 FAVTLETVL 9 73 496.78660711304826 991.5586612928965 2 496.786865234375 MULTI HCD FTMS 0 0 0 21037 176830.375 0.423876692367118 2 -0.062713623046875 2 Unmodified _FAVTLETVL_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2 112.59319219568356 0.00251905749371435 1 {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L} 9 0 + 77.502 0 0 7.8162 7.8162 93.011 0 0 0 3.65279269351241 46.15356566548286 3.65279269351241 13.182955476022897 0 2.2302046884880937 0 1.5356668758921828 0 + + {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L};{[TV]|[{I|L}S]}{[QN]|[E{I|L}]|[KN]}A{M(Oxidation (M))|F}TV{I|L};{[TV]|[{I|L}S]}{[QN]|[E{I|L}]|[KN]}[{I|L}T]V{[MS]|[{M(Oxidation (M))|F}A]} 7.8162;6.4866;0.83042 +;-;- + 948 NaN NaN 213259.3 NaN 17106 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21040 85.184 NaN 469540 35 0 38449 0.261 + 22899 QYPVIIHLIW 10 82 641.3712218821611 1280.727890831122 2 641.3718872070312 MULTI HCD FTMS 0 0 0 21037 104588.4921875 0.5414606258496137 -2 0.05892181396484375 3 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 67.34385681178166 0.020732631418547785 1 [YQ][VP]{I|L}{I|L}[H{I|L}]{I|L}W 10 0 + 57.695 0 0 4.5048 4.5048 86.858 0 0 0 11.60672998838141 11.60672998838141 11.60672998838141 11.60672998838141 0 1.7059771852360797 1.6989700043360187 0 0 + + [YQ][VP]{I|L}{I|L}[H{I|L}]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}S[VP]{I|L}{I|L}[H{I|L}]{I|L}W;{[WS]|[C(Carbamidomethyl (C)){I|L}]}[VP]{I|L}{I|L}H{I|L}{I|L}{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}{I|L}[WP][VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}{I|L}[RV][DV];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}[WP]{I|L}[VS] 4.5048;3.5986;2.0229;1.9792;1.8407;1.7461 +;-;-;-;-;- + 228 + NaN NaN 151668.3 NaN 17107 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21041 85.188 NaN 389570 35 0 28153 0.261 + 19783 NYAWVYYHL 9 70 614.7943040834457 1227.5740552336913 2 614.7960815429688 MULTI HCD FTMS 0 0 0 21037 109273.234375 0.5469073537924324 31 -0.7205734252929688 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 45.69961567697781 0.039180348357221985 1 [YN]AWVYQ{[RE]|[WV]} 9 3 + 49.29 0 0 4.0152 4.0152 79.88 0 0 0 14.71726222832956 17.64894796500801 14.71726222832956 0.05424261292885291 0 1.6382104921644451 1.3979400086720375 0 0.28872548999643577 [YN]AWVYQ{[RE]|[WV]};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[AG]{[RE]|[WV]};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]H[PG]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}YQ{[RE]|[WV]};[Y{I|L}]Y{[HG]|PP}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]H[RP]WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}Y[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.0152;4.0108;3.7555;3.2651;2.4341;2.3816;2.052;2.0476;1.9534;1.7923 -;-;-;-;-;-;-;-;-;- 813 NaN NaN 134363.2 NaN 17108 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21042 85.191 NaN 403190 35 0 44047 0.261 + 23103 RESSSPYYDN 10 73 609.2557231114249 1216.4968932896497 2 609.7592163085938 MULTI HCD FTMS 0 0 0 21037 67411.265625 0.48756717111159076 -3 0.08838653564453125 5 Unmodified _RESSSPYYDN_ REV__ENSG00000180116|ENST00000324616|C12orf40;REV__nc|ENSG00000180116|Q86WS4-2|REDIC1;REV__nc|ENSG00000180116|Q86WS4-3|REDIC1 7.101721422024254 0.4377131641736035 1 T{M(Oxidation (M))|F} 2 -1 17.228 0 0 1.4162 0 0 950.3673573224625 0 950.3673573224625 0 8.671641298000841 0 0 0 0.3494850021680094 0 0 0 T{M(Oxidation (M))|F} 1.4162 - 20 NaN NaN 156962.4 NaN 17109 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21043 85.194 NaN 368570 35 0 53443 0.261 + 19977 NYIDIVKYVF 10 55 637.3451989415546 1272.675844949909 2 637.3449096679688 MULTI HCD FTMS 0 0 0 21037 58065.484375 0.1873733114453293 -3 0.08838653564453125 6 Unmodified _NYIDIVKYVF_ ENSG00000162408|ENST00000377705|NOL9 60.899326713953855 0.038151090291573736 1 [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F} 10 0 + 100.26 0 0 7.8778 7.8778 94.803 0 0 0 17.941453415473205 16.53212513775344 16.53212513775344 25.11561899423569 0 3.0356668758921828 1.6989700043360187 0 0.3807196863200844 + + [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F};[YN]{I|L}D{I|L}V[YV]K{M(Oxidation (M))|F};[YV]QD{I|L}VKYV{M(Oxidation (M))|F};[YV][AG]D{I|L}VKYV{M(Oxidation (M))|F};[YV]QD{I|L}V[YV]K{M(Oxidation (M))|F};[YV][RH]V{I|L}D{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV][AG]D{I|L}V[YV]K{M(Oxidation (M))|F};[RH][YV]V{I|L}QQ[KC] 7.8778;5.9043;5.736;5.0159;3.7626;3.1127;3.0425;0.83351 +;-;-;-;-;-;-;- + 243 NaN NaN 137045.3 NaN 17110 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21044 85.198 NaN 184620 35 0 15224 0.261 + 30205 VIDEDGGDEYF 11 52 629.761078599518 NaN 0 629.7619018554688 PEAK HCD FTMS 0 0 0 21037 13399.4658203125 0.15383470854596099 20 -0.462615966796875 7 Unmodified _VIDEDGGDEYF_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF;REV__ENST00000487086.1_1_20:1438843-1447469:-|nuORF;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 3.2813086475875832 0.3328120158028032 1 YE{M(Oxidation (M))|F} 3 -1 13.812 0 0 1.0984 0 0 166.0844326692 649.2277972382304 815.3122299074305 0 0 0 0 0 0 0 0 0 YE{M(Oxidation (M))|F} 1.0984 - 10 + NaN NaN 116884.7 NaN 17111 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21045 85.201 NaN 510790 35 0 60388 0.262 + 23579 RPDVHLFNS 9 84 542.7808216969185 1083.5470904606368 2 542.7807006835938 MULTI HCD FTMS 0 0 0 21037 62918.58984375 0.5327346623907196 -1 0.026031494140625 8 Unmodified _RPDVHLFNS_ REV__ENSG00000120802|ENST00000556029|TMPO;REV__nc|ENSG00000120802|P42167-2|TMPO 25.399314129420986 0.14091189997036632 1 {I|L}NS{M(Oxidation (M))|F} 4 -1 35.899 0 0 3.3131 0 0 604.3096283939828 0 604.3096283939828 0 14.704999916446795 0 0 0 0.28872548999643577 0 0.5866968715561641 0.7134679910804405 {I|L}NS{M(Oxidation (M))|F} 3.3131 - 682 + NaN NaN 162415.6 NaN 17112 3931 21037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21047 85.21 NaN 1387700 35 0 192910 0.327 + 3937 EPVYIDLTL 9 87 531.7895268969046 1061.564500860609 2 531.7897338867188 MULTI HCD FTMS 0 0 0 21046 701624.375 0.8461735599546838 -1 0.0294342041015625 1 Unmodified _EPVYIDLTL_ ENSG00000163811|ENST00000407426|WDR43 141.82661023413823 1.746659319327287E-05 1 [{I|L}T]D{I|L}{I|L}YDP{I|L} 9 7 + 60.314 0 0 5.6816 5.6816 82.56 0 0 0 6.113102926332559 -0.17072975904375198 -0.17072975904375198 0.16589350960074967 0 0.1989700043360188 1.3979400086720375 1.024227503252014 0 [{I|L}T]D{I|L}{I|L}YDP{I|L};[EP]VY{I|L}D{I|L}T{I|L};[{I|L}T]D{I|L}Y{I|L}DP{I|L};[{I|L}T]D{I|L}{I|L}YV[EP];[{I|L}T]D{I|L}Y{I|L}V[EP];[EP]VY{I|L}{[QN]|[E{I|L}]|[KN]}S{I|L} 5.6816;5.666;5.2143;4.8105;4.3432;2.346 -;+;-;-;-;- + 626 NaN NaN 291143 NaN 17113 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21048 85.214 NaN 743070 35 0 123590 0.261 -1 VWSMMRFLT 9 77 593.7912764045258 1185.5679998758515 2 593.79150390625 MULTI HCD FTMS 0 0 0 21046 395400.15625 0.9600939848839587 -2 0.0554656982421875 2 Oxidation (M) _VWSM(Oxidation (M))MRFLT_ ENSG00000133687|ENST00000539277|TMTC1;nc|ENSG00000133687|Q8IUR5-1|TMTC1 24.020572477871973 0.15282392193088168 1 VWSDVT 6 -1 78.977 0 0 6.6616 0 0 0 495.2219169399538 495.2219169399538 51.01850649356642 0 0 0 0 1.6549471895720984 1.6989700043360187 0.7302046884880937 0 VWSDVT 6.6616 - 395 + NaN NaN 201005.1 NaN 17114 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21049 85.218 NaN 1280200 35 0 111370 0.261 + 16466 LSSYGDPLPFT 11 110 598.7952939478225 1195.576034962445 2 598.7952880859375 MULTI HCD FTMS 0 0 0 21046 302785.6875 0.7574768767330577 -2 0.0554656982421875 3 Unmodified _LSSYGDPLPFT_ REV__ENSG00000110344|ENST00000252108|UBE4A;REV__nc|ENSG00000110344|Q14139-2|UBE4A 27.628801355627647 0.21662447369784368 1 [WD]CT{I|L}T[DN]D 9 -1 44.84 0 0 3.7505 0 0 0 129.12954681761371 129.12954681761371 18.20190652213747 0 0 0 0 1.3182503180159344 1.6989700043360187 1.2753187046026266 0.3252574989159953 [WD]CT{I|L}T[DN]D 3.7505 - 2205 NaN NaN 283715.7 NaN 17115 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21050 85.221 NaN 295430 35 0 39581 0.262 -1 0 63 504.26495351379157 503.2576770471916 1 504.2650146484375 MULTI HCD FTMS 0 0 0 21046 161112.703125 0.44719038311163656 4 -0.1248779296875 4 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 17.078 0 0 3.3936 0 0 191.11114492004157 0 191.11114492004157 0 15.088643834802156 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3936 - 11 + NaN NaN 122741.4 NaN 17116 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21051 85.224 NaN 419130 35 0 38985 0.261 -1 0 91 585.8127137264215 1169.610874519643 2 585.8131103515625 MULTI HCD FTMS 0 0 0 21046 155278.640625 0.3333803097275219 25 -0.5671920776367188 5 NaN NaN 1 DVR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 48.008 0 0 4.1046 0 0 261.11055190254064 0 261.11055190254064 0 30.292162073914646 0 0 0 1.2302046884880937 0 0 0 DVR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.1046 - 2931 NaN NaN 154427 NaN 17117 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21052 85.227 NaN 418470 35 0 29207 0.261 + 19784 NYAWVYYHL 9 82 614.7943040834457 1227.5740552336913 2 614.7938842773438 MULTI HCD FTMS 0 0 0 21046 92172.0625 0.4613167998896408 32 -0.7367935180664062 6 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 49.55428908609986 0.03219431099695407 1 [YN]AWVYYH{I|L} 9 0 + 64.139 0 0 5.2248 5.2248 88.738 0 0 0 22.657942671832316 22.507718356501556 22.507718356501556 14.156687756324686 0 1.610924374808178 1.3010299956639813 0 0.25 + + [YN]AWVYYH{I|L};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWV[PG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[HT]VCKGD{I|L};[Y{I|L}][WY][NG]YH{I|L};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{NN|[MP]|[D{I|L}]|[EV]}Q[HT]VC[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][WY]{I|L}DP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.2248;4.0716;4.0021;3.4513;3.4327;1.6909;1.1366;1.1072;0.9268;0.92321 +;-;-;-;-;-;-;-;-;- + 1058 NaN NaN 145010 NaN 17118 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21053 85.231 NaN 147030 35 0 8295.1 0.264 -1 0 58 426.24568896454497 850.47682499589 2 426.24615478515625 MULTI HCD FTMS 0 0 0 21046 105915.9453125 0.8288276121789091 -4 0.11782073974609375 7 NaN NaN 1 {I|L} 1 -1 12.764 0 0 1.5008 0 0 719.3819133521384 0 719.3819133521384 0 2.7025411679202787 0 0 0 0 0 0 0 {I|L} 1.5008 - 35 + NaN NaN 108269.5 NaN 17119 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21054 85.234 NaN 188010 35 0 14464 0.261 + 17897 MILELDPTF 9 58 547.7756816103281 NaN 0 547.7747802734375 PEAK HCD FTMS 0 0 0 21046 73809.5 0.7620218920817642 -7 0.20635986328125 8 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 54.773552608820026 0.03521077087578403 1 PTD{I|L}E{I|L} 6 7 31.636 0 0 2.893 0 0 165.07772129580025 257.09552942447505 422.1732507202753 0 0 0 0 0 1.7302046884880937 0 0 0 PTD{I|L}E{I|L} 2.893 - 259 + NaN NaN 106901.1 NaN 17120 3932 21046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21056 85.239 NaN 1633500 35 0 61757 0.327 + 9987 IEKLKERSS 9 123 545.3168208601961 1088.6190887871921 2 545.3170776367188 MULTI HCD FTMS 0 0 0 21055 1581890.5 0.4387938353520195 19 -0.425994873046875 1 Unmodified _IEKLKERSS_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 9.38312468134398 0.279288223203164 1 KQ{[QN]|[E{I|L}]|[KN]}KN 6 7 14.063 0 0 1.2919 0 0 330.16793151019493 0 330.16793151019493 0 1.845012469977771 0 0 0 0.75 0 0.3252574989159953 0 KQ{[QN]|[E{I|L}]|[KN]}KN 1.2919 - 226 NaN NaN 332752.6 NaN 17121 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21057 85.243 NaN 1609000 35 0 129890 0.261 -1 0 118 566.7643580470863 1131.5141631609724 2 566.7645874023438 MULTI HCD FTMS 0 0 0 21055 709881.75 0.7480902737070175 -1 0.0332794189453125 2 NaN NaN 1 [YE]{M(Oxidation (M))|F}TDP{M(Oxidation (M))|F}T 8 -1 62.633 0 0 5.5353 0 0 0 128.0732710384157 128.0732710384157 21.04624573288502 0 0 0 0 1.9559771852360797 1.0457574905606752 2.122363747448347 0 [YE]{M(Oxidation (M))|F}TDP{M(Oxidation (M))|F}T 5.5353 - 2429 NaN NaN 323083.3 NaN 17122 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21058 85.247 NaN 611710 35 0 264510 0.261 + 30967 VRRRHSSIL 9 78 562.3440213297208 1122.6734897262415 2 562.343994140625 MULTI HCD FTMS 0 0 0 21055 194370.84375 0.22521245012632443 34 -0.7752456665039062 3 Unmodified _VRRRHSSIL_ ENSG00000137812|ENST00000399668|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;nc|ENSG00000137812|Q8NG31|KNL1 2.0597508629832335 0.3354026079994024 1 MEC{M(Oxidation (M))|F} 4 9 8.9279 0 0 0.79524 0 0 132.27445942292337 477.226550781904 609.5010102048274 0 0 0 0 0 0 0 0 0 MEC{M(Oxidation (M))|F} 0.79524 - 137 + NaN NaN 174626.8 NaN 17123 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21059 85.25 NaN 425980 35 0 49090 0.261 -1 STYFEYLMF 9 91 608.7668514352719 1215.5191499373436 2 609.256103515625 MULTI HCD FTMS 0 0 0 21055 16673.52734375 0.6573806730907914 -5 0.15110015869140625 4 Oxidation (M) _STYFEYLM(Oxidation (M))F_ ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C 15.847184025352803 0.2234401846867398 1 {I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 31.146 0 0 2.5624 0 0 675.2880726544937 0 675.2880726544937 0 14.336068845642203 0 0 0 0.6989700043360187 0 0 0 {I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5624 - 278 NaN NaN 143269.7 NaN 17124 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21060 85.254 NaN 259470 35 0 14672 0.261 + 11708 KAPPMRAPPF 10 74 556.3079810701495 1110.6014092070989 2 556.308349609375 MULTI HCD FTMS 0 0 0 21055 130002.265625 0.37655971983720954 34 -0.7752456665039062 5 Unmodified _KAPPMRAPPF_ REV__ENST00000372398.5_1_9:132996136-132996268:+|nuORF 3.944395688203298 0.4544253912184634 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 6 -1 16.621 0 0 1.4966 0 0 0 367.26477525618014 367.26477525618014 1.1365112015771075 0 0 0 0 0 0 0.28872548999643577 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 1.4966 - 184 NaN NaN 120964 NaN 17125 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21061 85.257 NaN 352070 35 0 93437 0.261 + 5990 FPDQVQDLVF 10 39 604.3031243520578 1206.5916957709155 2 604.3033447265625 MULTI HCD FTMS 0 0 0 21055 103505.4921875 0.44108956792628656 -3 0.0887451171875 6 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 12.872603262515298 0.3907060291096084 1 Q{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 5 5 32.773 0 0 2.7162 0 0 586.275921231597 0 586.275921231597 0 25.325834421237516 0 0 0 1.2059771852360797 0 0 0 + Q{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 2.7162 + + 40 NaN NaN 139659 NaN 17126 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21062 85.26 NaN 695800 35 0 61615 0.261 + 23580 RPDVHLFNS 9 81 542.7808216969185 1083.5470904606368 2 542.78125 MULTI HCD FTMS 0 0 0 21055 114830.1015625 0.9722718760879411 1 -0.03271484375 7 Unmodified _RPDVHLFNS_ REV__ENSG00000120802|ENST00000556029|TMPO;REV__nc|ENSG00000120802|P42167-2|TMPO 25.399314129420986 0.14091189997036632 1 {I|L}{I|L}NS{M(Oxidation (M))|F} 5 -1 50.49 0 0 4.6597 0 0 491.22679124364305 0 491.22679124364305 0 18.732040608115454 0 0 0 0 0 1 0.7302046884880937 {I|L}{I|L}NS{M(Oxidation (M))|F} 4.6597 - 1368 + NaN NaN 181887.3 NaN 17127 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21063 85.264 NaN 379710 35 0 87005 0.261 + 4461 EYILALNEL 9 65 539.2949899725709 1076.5754270119417 2 539.294921875 MULTI HCD FTMS 0 0 0 21055 123670.671875 0.9106738223428948 -1 0.0332794189453125 8 Unmodified _EYILALNEL_ ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP 47.594388314883695 0.03493607795751234 1 {[QN]|[E{I|L}]|[KN]}Y{I|L}A{I|L}NE{I|L} 9 2 + 50.493 0 0 4.6902 4.6902 85.723 0 0 0 3.485221620214105 31.064148858710254 3.485221620214105 9.208187539523749 0 1.7984550065040281 0 0.7614393726401688 0 {[QN]|[E{I|L}]|[KN]}Y{I|L}A{I|L}NE{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}A{I|L}GGE{I|L} 4.6902;3.8349 -;- 377 NaN NaN 137318 NaN 17128 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21064 85.267 NaN 333880 35 0 84098 0.261 + 31928 VYPADVVLF 9 50 511.78126633903776 1021.5479797448755 2 511.7815246582031 MULTI HCD FTMS 0 0 0 21055 158432.734375 0.9469807449861979 3 -0.0915985107421875 9 Unmodified _VYPADVVLF_ ENSG00000130717|ENST00000372215|UCK1;ENSG00000143179|ENST00000367879|UCK2;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-2|UCK1;nc|ENSG00000130717|Q9HA47-3|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 57.47134341890925 0.0211188941628804 1 [YV][PA]DVV{I|L}{M(Oxidation (M))|F} 9 0 + 73.65 0 0 7.2097 7.2097 85.914 0 0 0 1.3206844429176101 1.3206844429176101 1.3206844429176101 1.3206844429176101 0 2.3807196863200843 1.3979400086720375 0 0 + + [YV][PA]DVV{I|L}{M(Oxidation (M))|F};[YV]D[PA]VV{I|L}{M(Oxidation (M))|F};[YV][PA]VVD{I|L}{M(Oxidation (M))|F} 7.2097;7.0804;4.1006 +;-;- + 111 + NaN NaN 134874.4 NaN 17129 3933 21055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21066 85.272 NaN 4168900 35 0 469060 0.327 -1 0 109 582.7998357176308 1163.5851185020615 2 582.8001708984375 MULTI HCD FTMS 0 0 0 21065 3404181 1 0 0 1 NaN NaN 1 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 73.196 0 0 6.2906 0 0 0 162.05454161528783 162.05454161528783 40.91916899126604 0 0 0 0 1.7619229975844686 1.6989700043360187 1.829689690656103 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 6.2906 - 5489 NaN NaN 570243.9 NaN 17130 3934 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21067 85.276 NaN 925810 35 0 41850 0.261 -1 0 99 553.8301034429838 1105.6456539527676 2 553.830322265625 MULTI HCD FTMS 0 0 0 21065 988337.875 0.47989130147804426 35 -0.7980499267578125 2 NaN NaN 1 D[RV]PYK 6 -1 10.882 0 0 0.98424 0 0 61.05338744197258 283.11860071353755 344.1719881555101 0 0 0 0 0 0.9802046884880938 0 0 0.4247425010840047 D[RV]PYK 0.98424 - 160 + NaN NaN 232480.3 NaN 17131 3934 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21068 85.28 NaN 422990 35 0 32409 0.261 + 34134 YNYAYPYSY 9 94 602.2516290573478 1202.4887051814956 2 602.2673950195312 MULTI HCD FTMS 0 0 0 21065 11323.529296875 0.09034108938603025 8 -0.20566558837890625 3 Unmodified _YNYAYPYSY_ ENSG00000167615|ENST00000326764|LENG8;nc|ENSG00000167615|Q96PV6-1|LENG8 11.640296217721598 0.25978676193971967 1 ETEW{I|L}Q{[{M(Oxidation (M))|F}C]|[YS]} 8 7 48.498 0 0 4.0331 0 0 148.02178898328526 0 148.02178898328526 0 3.3452380040146537 0 0 0 0 0 1.363982988912431 0.2742275032520141 ETEW{I|L}Q{[{M(Oxidation (M))|F}C]|[YS]} 4.0331 - 2907 + NaN NaN 149771.2 NaN 17132 3934 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21069 85.283 NaN 652280 35 0 87366 0.261 + 32211 VYTILTVQL 9 78 525.315695639988 1048.616838346776 2 525.3159790039062 MULTI HCD FTMS 0 0 0 21065 183457.34375 0.30935321818488215 -4 0.1214599609375 4 Unmodified _VYTILTVQL_ ENSG00000082996|ENST00000392894|RNF13 103.41943736471063 0.004016698775839292 1 [YV]T{I|L}{I|L}TVQ{I|L} 9 0 + 83.76 0 0 7.9877 7.9877 89.135 0 0 0 2.243012119929091 59.76240121512109 2.243012119929091 5.713337517843655 0 2.56295299324845 0 1.9749073637206092 0 + + [YV]T{I|L}{I|L}TVQ{I|L};[YV]{I|L}T{I|L}TVQ{I|L};[YV]T{I|L}{I|L}TV[AG]{I|L};[YV]{I|L}T{I|L}TV[AG]{I|L} 7.9877;7.4429;7.1096;6.5647 +;-;-;- + 648 NaN NaN 180349.4 NaN 17133 3934 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21070 85.286 NaN 265730 35 0 24971 0.261 -1 MGNNFAAMQDI 11 72 614.2622988396141 1226.5100447460281 2 614.2620849609375 MULTI HCD FTMS 0 0 0 21065 49839.6484375 0.5426638190633754 1 -0.02277374267578125 5 Oxidation (M) _MGNNFAAM(Oxidation (M))QDI_ ENSG00000139865|ENST00000553443|TTC6;nc|ENSG00000139865|Q86TZ1-2|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6 12.872603262515298 0.344922997490724 1 [Y{I|L}][C(Carbamidomethyl (C))C]{[CP]|[EA]}{I|L}QD{I|L} 10 -1 + 36.916 0 0 3.0099 3.0099 81.915 0 0 0 6.276362525516529 6.5321251377534395 6.276362525516529 6.276362525516529 0 1.2302046884880937 2 0 0 [Y{I|L}][C(Carbamidomethyl (C))C]{[CP]|[EA]}{I|L}QD{I|L};[YN]AW[WM]ED{I|L};[{M(Oxidation (M))|F}E]YD{[QG]|[NA]}{I|L}QD{I|L};[{M(Oxidation (M))|F}E]YD[{I|L}A]NQD{I|L};[YN]{[{M(Oxidation (M))|F}D]|MM}{[CP]|[EA]}{I|L}QD{I|L};[Y{I|L}]EE[WM]ED{I|L};[{M(Oxidation (M))|F}E]YD{[QG]|[NA]}{I|L}[AG]D{I|L};[{M(Oxidation (M))|F}E]Y[RP]C(Carbamidomethyl (C))QD{I|L};[{M(Oxidation (M))|F}E]YD[{I|L}A]N[AG]D{I|L};[{M(Oxidation (M))|F}E]YD[{I|L}A]GGQD{I|L} 3.0099;2.4981;2.4773;2.4378;2.3984;2.0301;1.7301;1.7243;1.6906;1.6906 -;-;-;-;-;-;-;-;-;- 705 NaN NaN 120303 NaN 17134 3934 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21071 85.29 NaN 270240 35 0 36213 0.261 -1 NCFACSTCNT 10 55 617.717001121829 1233.4194493104578 2 617.7323608398438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 3 Carbamidomethyl (C) _NC(Carbamidomethyl (C))FAC(Carbamidomethyl (C))STC(Carbamidomethyl (C))NT_ ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000603767.1_1_2:111195993-111209584:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1 1.3295316138638542 0.46826628246186464 1 {M(Oxidation (M))|F}N{I|L} 3 -1 12.307 0 0 0.99781 0 0 132.0043624958078 724.2114962213499 856.2158587171577 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N{I|L} 0.99781 - 38 + NaN NaN 127714.8 NaN 17135 3934 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21073 85.295 NaN 1154500 35 0 197250 0.327 + 27281 SYQDFFEAI 9 81 560.2536199032421 1118.4926868732841 2 560.2538452148438 MULTI HCD FTMS 0 0 0 21072 591701.25 0.2319773221769871 5 -0.13388824462890625 1 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 100.0907132914201 0.004261551473353346 1 {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 9 0 + 72.539 0 0 6.4854 6.4854 90.361 0 0 0 7.566504924811625 54.038727145734015 7.566504924811625 12.09544243948811 0 2.1307196863200843 0 1.4802046884880937 0.28872548999643577 + + {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]DE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[CP]|[EA]}{M(Oxidation (M))|F}{[HG]|PP}[KS]C(Carbamidomethyl (C))A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}[{I|L}P]{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}P{[HG]|PP}[KS]C(Carbamidomethyl (C))A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YV]MT{[QD]|[EN]|[WG]|[KD]|[RS]} 6.4854;5.404;4.8645;4.4887;4.0412;3.3924;1.5692;1.4883;1.3218;0.99943 +;-;-;-;-;-;-;-;-;- + 977 NaN NaN 259329.2 NaN 17136 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21074 85.299 NaN 234980 35 0 9262.7 0.261 + -1 LGLSRRLFF 9 88 575.8422855347827 NaN 0 575.8422241210938 PEAK HCD FTMS 0 0 0 21072 173415.640625 0.6963742874989137 3 -0.08171844482421875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGLSRRLFF_ REV__ENST00000352410.8_1_15:75190564-75190915:+|nuORF 12.531546534597751 0.23452071659215576 1 D 1 -1 7.0116 0 0 0.60988 0 0 61.05113331894706 970.5426729791624 1031.5938062981095 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.60988 - 22 + NaN NaN 126535.2 NaN 17137 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21075 85.302 NaN 458140 35 0 72370 0.261 -1 ENCTKELLM 9 73 548.7536221690802 NaN 0 548.7653198242188 PEAK HCD FTMS 0 0 0 21072 21559.38671875 1 0 0 3 Oxidation (M) _ENCTKELLM(Oxidation (M))_ ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;nc|ENSG00000162601|Q5VVJ2-3|MYSM1 16.942295170755138 0.2079222001251384 1 {I|L}SNKN 5 -1 19.68 0 0 1.7965 0 0 165.02165202523867 371.15671716861567 536.1783691938543 0 0 0 0 0 0 0 0.7742275032520141 0 {I|L}SNKN 1.7965 - 744 + NaN NaN 157862.3 NaN 17138 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21076 85.306 NaN 419200 35 0 66157 0.261 -1 TPFLYDLVM 9 84 557.7779456169287 1113.5413383006573 2 557.7781372070312 MULTI HCD FTMS 0 0 0 21072 98348.4140625 0.11514401868910636 10 -0.21450042724609375 4 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 39.957323273324995 0.06554068735427583 1 YD{I|L}V{M(Oxidation (M))|F} 5 -1 49.157 0 0 4.4144 0 0 458.252245017775 0 458.252245017775 0 31.721675119240516 0 0 0 1.305462187404089 0 0.805462187404089 0 YD{I|L}V{M(Oxidation (M))|F} 4.4144 + + 1149 NaN NaN 146990.7 NaN 17139 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21077 85.309 NaN 270670 35 0 38429 0.263 -1 PKGCLCSS 8 66 426.1911002587844 850.3676475843688 2 426.1911926269531 MULTI HCD FTMS 0 0 0 21072 102100.6015625 0.17672650533616568 -3 0.08876800537109375 5 Carbamidomethyl (C) _PKGCLC(Carbamidomethyl (C))SS_ ENSG00000179796|ENST00000396641|LRRC3B 2.302733041254933 0.5385759549224092 1 {I|L}{I|L} 2 -1 6.4537 0 0 0.75892 0 0 59.036700625030285 562.1414278619749 621.1781284870052 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.75892 - 16 + NaN NaN 121616.8 NaN 17140 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21078 85.312 NaN 379230 35 0 52708 0.261 + 31379 VYAEIMAVL 9 61 504.7748693262106 1007.5351857192212 2 504.7572021484375 MULTI HCD FTMS 0 0 0 21072 41693.8203125 0.6024204465001698 -3 0.08876800537109375 6 Unmodified _VYAEIMAVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 36.04419817259434 0.08350412372117409 1 MAV{I|L} 4 5 32.177 0 0 3.1936 0 0 575.2964955060562 0 575.2964955060562 0 15.186960168490309 0 0 0 0.9269359821608809 0 0 0 + MAV{I|L} 3.1936 + + 43 NaN NaN 134186 NaN 17141 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21079 85.316 NaN 146330 35 0 19018 0.261 -1 MPDYMILQEL 10 38 634.7982313874211 1267.581909841642 2 634.7982788085938 MULTI HCD FTMS 0 0 0 21072 76281.6171875 0.9514875252829015 1 -0.03610992431640625 7 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 27.223235318498237 0.2564750587861972 1 {I|L}{I|L}QE{I|L} 5 -1 49.821 0 0 3.9304 0 0 653.2189808576187 0 653.2189808576187 0 39.363044005075736 0 0 0 1.4247425010840047 0 0 0 {I|L}{I|L}QE{I|L} 3.9304 + + 33 NaN NaN 103074.1 NaN 17142 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21080 85.319 NaN 163950 35 0 24486 0.264 + 23258 RGQRAALP 8 59 434.7586224324093 867.5026919316186 2 434.75909423828125 MULTI HCD FTMS 0 0 0 21072 54719.43359375 0.7236787113307102 3 -0.08171844482421875 8 Unmodified _RGQRAALP_ ENST00000350796.7_1_7:6203761-6203953:-|nuORF 2.577480529830294 0.5381683276125971 1 Q 1 7 5.4846 0 0 0.63222 0 0 325.2075391989999 411.2219155579663 736.4294547569662 0 0 0 0 0 0 0 0 0 + Q 0.63222 + + 6 + NaN NaN 106124.3 NaN 17143 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21081 85.322 NaN 213050 35 0 22666 0.261 + 17934 MIRFLHQI 8 56 529.3017306730245 1056.588908412849 2 529.3023681640625 MULTI HCD FTMS 0 0 0 21072 67072.515625 0.613946913965085 5 -0.13388824462890625 9 Unmodified _MIRFLHQI_ ENST00000347055.3_1_2:88328059-88333697:-|nuORF 19.438996006549623 0.45076845602799126 1 Q{I|L} 2 6 25.969 0 0 2.4578 0 0 797.4369575609198 0 797.4369575609198 0 11.365006360318688 0 0 0 0.5 0 0 0 + Q{I|L} 2.4578 + + 216 NaN NaN 123569 NaN 17144 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21082 85.326 NaN 191630 35 0 24891 0.261 + -1 YLQMNECMN 9 60 617.7329336148546 1233.451314296509 2 617.7329711914062 MULTI HCD FTMS 0 0 0 21072 50345.015625 0.6212302111965736 3 -0.08171844482421875 10 Carbamidomethyl (C),2 Oxidation (M) _YLQM(Oxidation (M))NEC(Carbamidomethyl (C))M(Oxidation (M))N_ REV__ENSG00000078618|ENST00000352171|NRDC;REV__nc|ENSG00000078618|O43847-2|NRDC 1.844237919475145 0.33703635659052655 1 N{M(Oxidation (M))|F}N 3 -1 20.177 0 0 1.6358 0 0 840.3159046857437 0 840.3159046857437 0 12.105319037595875 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}N 1.6358 - 77 NaN NaN 110675.5 NaN 17145 3935 21072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21084 85.331 NaN 1854000 35 0 131100 0.327 + 22526 QSCPDYIELN 10 108 591.2610304996275 1180.507508066055 2 591.27734375 MULTI HCD FTMS 0 0 0 21083 36998.38671875 0.058104986891453776 11 -0.20708465576171875 1 Unmodified _QSCPDYIELN_ REV__ENSG00000111404|ENST00000538724|RERGL;REV__nc|ENSG00000111404|Q9H628|RERGL 22.736283301280096 0.29844449404982915 1 MDQ{I|L}CC{I|L}Q 8 -1 64.465 0 0 5.4608 0 0 0 243.09841333560783 243.09841333560783 15.87052135296451 0 0 0 0 0 0 0.2742275032520141 2.0576556684809653 MDQ{I|L}CC{I|L}Q 5.4608 - 12512 + NaN NaN 363468.8 NaN 17146 3936 21083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21085 85.335 NaN 1127100 35 0 116950 0.261 + 113 ADSEGFIPLTF 11 103 598.7952939478225 1195.576034962445 2 598.7955322265625 MULTI HCD FTMS 0 0 0 21083 264838.09375 0.6625436418413494 2 -0.0456085205078125 2 Unmodified _ADSEGFIPLTF_ ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-3|WDCP 27.628801355627647 0.21662447369784368 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[W{M(Oxidation (M))|F}][{I|L}P]T{M(Oxidation (M))|F} 9 5 + 41.818 0 0 3.4977 3.4977 85.226 0 0 0 1.1785425851119342 5.169752687851528 1.1785425851119342 9.960762528683702 0 0.8807196863200843 1.2218487496163564 1.066901560044258 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[W{M(Oxidation (M))|F}][{I|L}P]T{M(Oxidation (M))|F};MW{I|L}{[MG]|[TS]}T[{I|L}P]T{M(Oxidation (M))|F};MW{[CT]|[{M(Oxidation (M))|F}G]}PT[{I|L}P]T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}W[W{M(Oxidation (M))|F}][{I|L}P]T{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}RRT{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}{[YC]|[HE]}[HQ]{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}RRT{M(Oxidation (M))|F};MW{[CP]|[EA]}{M(Oxidation (M))|F}[{I|L}T][W{I|L}];[YQ]YYRRT{M(Oxidation (M))|F} 3.4977;2.6646;2.4939;1.9722;1.8275;1.4921;0.68516;0.38143;0.27174 -;-;-;-;-;-;-;-;- 1093 NaN NaN 253742 NaN 17147 3936 21083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21086 85.339 NaN 296260 35 0 25034 0.261 + 22900 QYPVIIHLIW 10 62 641.3712218821611 1280.727890831122 2 641.3717651367188 MULTI HCD FTMS 0 0 0 21083 81202.375 0.42038935516110154 3 -0.0584564208984375 3 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 67.34385681178166 0.020732631418547785 1 [YQ][VP]{I|L}{I|L}[H{I|L}]{I|L}W 10 0 + 54.927 0 0 4.2887 4.2887 86.546 0 0 0 11.60672998838141 11.60672998838141 11.60672998838141 11.60672998838141 0 1.7302046884880937 1.6989700043360187 0 0 + + [YQ][VP]{I|L}{I|L}[H{I|L}]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}S[VP]{I|L}{I|L}[H{I|L}]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}{I|L}[WP][VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}[WP]{I|L}[VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}{I|L}[RV][DV] 4.2887;3.3824;1.763;1.5867;1.3861 +;-;-;-;- + 170 + NaN NaN 127850.8 NaN 17148 3936 21083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21087 85.342 NaN 115260 35 0 30672 0.264 + -1 SSSGMGLVF 9 40 450.71058371435413 NaN 0 450.7106628417969 PEAK HCD FTMS 0 0 0 21083 7921.72802734375 0.14150594953544646 -2 0.0588836669921875 4 Oxidation (M) _SSSGM(Oxidation (M))GLVF_ REV__ENSG00000149571|ENST00000525144|KIRREL3 7.910154910731844 0.25691533546754686 1 V 1 -1 10.485 0 0 1.1657 0 0 165.0792578640365 632.2376803033811 797.3169381674177 0 0 0 0 0 0.5 0 0 0 V 1.1657 + + 3 + NaN NaN 96128.6 NaN 17149 3936 21083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21088 85.345 NaN 127030 35 0 9717.2 0.261 -1 FPPPFYCFY 9 54 619.2728553746108 NaN 0 619.25634765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _FPPPFYC(Carbamidomethyl (C))FY_ ENST00000484991.1_1_12:111890502-111891686:-|nuORF 2.302733041254933 0.2840881193086663 1 Y 1 -1 6.9897 0 0 0.56527 0 0 165.12505508875716 905.3166290279424 1070.4416841166997 0 0 0 0 0 0 0 0 0 Y 0.56527 + + 18 + NaN NaN 105244.1 NaN 17150 3936 21083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21090 85.35 NaN 624390 35 0 100250 0.327 + 4019 ERSYVYAGLE 10 77 593.7912764045258 1185.5679998758515 2 593.7916870117188 MULTI HCD FTMS 0 0 0 21089 289920.78125 0.7039734147069726 3 -0.0782623291015625 1 Unmodified _ERSYVYAGLE_ ENSG00000179314|ENST00000317744|WSCD1 20.41453444215458 0.3201613495159799 1 VWSDVT 6 8 74.162 0 0 6.2554 0 0 0 495.2222869979201 495.2222869979201 46.64320017660792 0 0 0 0 1.6549471895720984 1.5228787452803376 0.4247425010840047 0 VWSDVT 6.2554 - 288 + NaN NaN 185119.5 NaN 17151 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21091 85.355 NaN 1013100 35 0 103820 0.261 + 114 ADSEGFIPLTF 11 100 598.7952939478225 1195.576034962445 2 598.7955932617188 MULTI HCD FTMS 0 0 0 21089 216127.09375 0.5406836673914541 3 -0.0782623291015625 2 Unmodified _ADSEGFIPLTF_ ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-3|WDCP 27.628801355627647 0.21662447369784368 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}ECT[DN]D 9 10 46.092 0 0 3.8552 0 0 0 129.13106116818827 129.13106116818827 22.46462170693448 0 0 0 0 1 1.3010299956639813 0.7614393726401688 0.2614393726401688 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}ECT[DN]D 3.8552 - 1453 NaN NaN 235385.8 NaN 17152 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21092 85.358 NaN 526910 35 0 87335 0.261 + 19978 NYIDIVKYVF 10 55 637.3451989415546 1272.675844949909 2 637.3453979492188 MULTI HCD FTMS 0 0 0 21089 241278.796875 0.7785900288033845 3 -0.0782623291015625 3 Unmodified _NYIDIVKYVF_ ENSG00000162408|ENST00000377705|NOL9 70.92866715596459 0.016484948974345597 1 [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F} 10 0 + 104.96 0 0 8.2475 8.2475 90.061 0 0 0 30.201564096728063 88.05228025768591 30.201564096728063 6.817496819840656 0 2.610924374808178 1.6989700043360187 0 0.9749073637206092 + + [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F};[YN]{I|L}D{I|L}VYKV{M(Oxidation (M))|F};[YN]{I|L}D{I|L}VYVK{M(Oxidation (M))|F};[YN]{I|L}D{I|L}VYV{M(Oxidation (M))|F}K;[RH]VYV{I|L}QQCK;[RH]V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KS]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.2475;7.7118;7.3123;6.7767;2.6935;0.81994 +;-;-;-;-;- + 220 NaN NaN 173490.6 NaN 17153 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21093 85.361 NaN 869280 35 0 96779 0.263 + 26876 SYIPSTVFF 9 86 530.7709913062797 1059.5274296793593 2 531.7898559570312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SYIPSTVFF_ ENSG00000140830|ENST00000268483|TXNL4B 46.020951573049366 0.037705236580089195 1 ETV{M(Oxidation (M))|F}ATV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 5 + 60.544 0 0 5.7143 5.7143 88.648 0 0 0 32.41689290714618 10.451265191687966 10.451265191687966 10.63863355862182 0 1.1989700043360187 0 0.7742275032520141 0 ETV{M(Oxidation (M))|F}ATV{M(Oxidation (M))|F}{M(Oxidation (M))|F};ET{I|L}{[CT]|[{M(Oxidation (M))|F}G]}TV{M(Oxidation (M))|F}{M(Oxidation (M))|F};ETV{M(Oxidation (M))|F}{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};ET{I|L}V{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T]D{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};ET{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QD[VP];[{I|L}T][VG]{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};ET{I|L}D[KC][VG][VP];{M(Oxidation (M))|F}[KS]P{[SA]|[TG]}{I|L}D[VP];E[DP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N{I|L}[{I|L}T] 5.7143;4.7102;4.6078;3.9751;2.6693;1.6754;1.6198;1.5965;1.5452;1.3489 -;-;-;-;-;-;-;-;-;- 858 + NaN NaN 220387.3 NaN 17154 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21094 85.365 NaN 299730 35 0 90283 0.261 -1 VMTEVLGIL 9 45 495.78043293069106 989.5463129281821 2 495.7690734863281 MULTI HCD FTMS 0 0 0 21089 50135.484375 0.09518654381705792 36 -0.8191757202148438 5 Oxidation (M) _VM(Oxidation (M))TEVLGIL_ ENST00000459854.5_1_22:19442175-19463025:-|nuORF 23.1484247019978 0.1603590852062899 1 V[C(Carbamidomethyl (C))N]G{I|L}{I|L}{I|L} 7 -1 33.192 0 0 3.3543 0 0 202.1318073957047 0 202.1318073957047 0 14.692285308700473 0 0 0 0.9247425010840047 0 0 0 V[C(Carbamidomethyl (C))N]G{I|L}{I|L}{I|L} 3.3543 - 127 NaN NaN 127173.9 NaN 17155 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21095 85.368 NaN 559110 35 0 26967 0.261 + 1443 AYSEIAYLF 9 80 538.7699790647429 NaN 0 538.7598876953125 PEAK HCD FTMS 0 0 0 21089 9213.7373046875 0.19278487283334128 4 -0.09454345703125 6 Unmodified _AYSEIAYLF_ ENSG00000134780|ENST00000257215|DAGLA 24.67388899826682 0.15602608049614122 1 TW{[VA]|[{I|L}G]}WT 6 8 27.268 0 0 2.5353 0 0 166.0988184123176 162.05579553775627 328.1546139500739 0 0 0 0 0 0 0 1.1861818737241734 0 TW{[VA]|[{I|L}G]}WT 2.5353 - 786 + NaN NaN 161694.3 NaN 17156 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21096 85.371 NaN 67104 35 0 12736 0.262 + 25042 SAACQLNQA 9 38 453.20960784584446 NaN 0 453.2093200683594 PEAK HCD FTMS 0 0 0 21089 32139.5859375 0.9502361808232721 3 -0.0782623291015625 7 Unmodified _SAACQLNQA_ REV__ENSG00000157617|ENST00000380486|C2CD2;REV__nc|ENSG00000157617|Q9Y426-2|C2CD2;REV__nc|ENSG00000157617|Q9Y426-3|C2CD2 1.844237919475145 0.28630992268396543 1 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.44 0 0 388.50129469383893 352.8627108209594 741.3640055147984 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.44 + + 1 + NaN NaN 92064.7 NaN 17157 3937 21089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21098 85.376 NaN 1901200 35 0 92531 0.327 -1 0 121 545.3168208601961 1088.6190887871921 2 545.3170776367188 MULTI HCD FTMS 0 0 0 21097 1618068.25 0.44882902658485546 24 -0.5206527709960938 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3415 0 0 923.5403056834797 0 923.5403056834797 0 2.7436253308967817 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3415 - 390 + NaN NaN 364803.9 NaN 17158 3938 21097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21099 85.381 NaN 395420 35 0 31763 0.261 + 19785 NYAWVYYHL 9 70 614.7943040834457 1227.5740552336913 2 614.7942504882812 MULTI HCD FTMS 0 0 0 21097 47737.328125 0.23892306246165151 38 -0.8749237060546875 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.04802738721622131 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 56.983 0 0 4.6419 4.6419 82.207 0 0 0 18.696662315049934 29.589489841524124 18.696662315049934 3.0645425695686725 0 1.7887254899964358 1.3979400086720375 0 0.3054621874040891 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[R{M(Oxidation (M))|F}]H[PG]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]HRPWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{M(Oxidation (M))|F}]KYVC(Carbamidomethyl (C))QD{I|L};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y{[HG]|PP}Y{[WN]|[YH]}{I|L};[Y{I|L}]Y{[HG]|PP}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.6419;4.3923;4.137;3.7397;2.6841;2.2954;1.8453;1.8428;1.7949;1.5453 +;-;-;-;-;-;-;-;-;- + 916 NaN NaN 147917.2 NaN 17159 3938 21097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21100 85.384 NaN 247030 35 0 42471 0.263 + 2293 DLSFPWIL 8 60 495.768292902826 989.522032872452 2 496.7868957519531 MULTI HCD FTMS 0 0 0 21097 30142.798828125 0.7773978212670066 -2 0.0456085205078125 3 Unmodified _DLSFPWIL_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 14.581692164780916 0.48650662947107914 1 AQE[{I|L}T]W{I|L} 7 6 21.981 0 0 2.2214 0 0 130.0900393195207 0 130.0900393195207 0 2.03234439706371 0 0 0 0.25 0 0.3494850021680094 0 AQE[{I|L}T]W{I|L} 2.2214 - 254 + NaN NaN 117056.6 NaN 17160 3938 21097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21102 85.389 NaN 1057100 35 0 69551 0.327 -1 0 108 566.7643580470863 1131.5141631609724 2 566.7645874023438 MULTI HCD FTMS 0 0 0 21101 400689.875 0.42225652125918245 5 -0.11054229736328125 1 NaN NaN 1 Y{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F}T{I|L} 7 -1 42.172 0 0 3.727 0 0 276.1108081245658 0 276.1108081245658 0 9.031672841889886 0 0 0 1.579689690656103 0 1.066901560044258 0 Y{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F}T{I|L} 3.727 - 1777 NaN NaN 252106.5 NaN 17161 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21103 85.393 NaN 983200 35 0 93630 0.261 + 19096 NFDNILNSF 9 93 542.2591139476608 1082.5036749621215 2 542.259033203125 MULTI HCD FTMS 0 0 0 21101 293547.90625 0.6816665682165616 1 -0.0393218994140625 2 Unmodified _NFDNILNSF_ ENSG00000186815|ENST00000335509|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;nc|ENSG00000186815|Q9ULQ1-3|TPCN1 136.39213081522345 0.00021731600835925866 1 {I|L}{I|L}NS{M(Oxidation (M))|F} 5 4 70.622 0 0 6.524 0 0 490.181727795909 0 490.181727795909 0 54.243317635947484 0 0 0 2.1747425010840047 0 0.9876954943324545 0.7059771852360797 + {I|L}{I|L}NS{M(Oxidation (M))|F} 6.524 + + 2644 + NaN NaN 252206.9 NaN 17162 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21104 85.397 NaN 418700 35 0 195610 0.261 + 819 AVKSRRPGPR 10 70 562.3440213297208 1122.6734897262415 2 562.343994140625 MULTI HCD FTMS 0 0 0 21101 75568.3515625 0.08755908694458236 40 -0.937225341796875 3 Unmodified _AVKSRRPGPR_ REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF 1.3295316138638542 0.46826628246186464 1 MEE 3 -1 11.682 0 0 1.0406 0 0 132.2764804767467 598.2492159479124 730.5256964246591 0 0 0 0 0 0 0 0 0 MEE 1.0406 - 100 + NaN NaN 145108.8 NaN 17163 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21105 85.4 NaN 388980 35 0 103260 0.261 + 5991 FPDQVQDLVF 10 37 604.3031243520578 1206.5916957709155 2 604.3032836914062 MULTI HCD FTMS 0 0 0 21101 211376.984375 0.9007848833628365 3 -0.08832550048828125 4 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 17.44264345198275 0.3479594151168503 1 Q{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 5 5 40.273 0 0 3.3378 0 0 586.2771951834573 0 586.2771951834573 0 40.27310937020445 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + Q{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 3.3378 + + 26 NaN NaN 153779.8 NaN 17164 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21106 85.404 NaN 334030 35 0 11712 0.261 -1 0 98 597.8559489485499 1193.6973449638997 2 597.8564453125 MULTI HCD FTMS 0 0 0 21101 217378.828125 0.937465570882692 1 -0.0393218994140625 5 NaN NaN 1 {I|L}QNN 4 -1 14.979 0 0 1.2549 0 0 706.4340213475767 0 706.4340213475767 0 6.752509456924827 0 0 0 0.07968969065610321 0 0 0.25 {I|L}QNN 1.2549 - 320 + NaN NaN 154556.5 NaN 17165 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21107 85.407 NaN 1130900 35 0 59122 0.261 + 25514 SFITSSWTF 9 71 538.2580988470041 1074.5016447608082 2 538.2587280273438 MULTI HCD FTMS 0 0 0 21101 345928.125 0.3849112107124354 -1 0.012847900390625 6 Unmodified _SFITSSWTF_ ENSG00000116209|ENST00000234831|TMEM59 133.70201269244603 0.0003804610509361063 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}WT{M(Oxidation (M))|F} 9 0 + 90.71 0 0 8.4421 8.4421 94.473 0 0 0 17.376430167995878 56.58748409920328 17.376430167995878 15.215299873086607 0 2.305462187404089 1.6989700043360187 1.4802046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}WT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}STVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[TV]|[{I|L}S]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VT{[CA]|SS}WT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}STVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}ST{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}{[WT]|[RM]}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[{M(Oxidation (M))|F}E]{[QG]|[NA]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]S[YQ]T{M(Oxidation (M))|F} 8.4421;7.026;6.4853;6.1879;6.0625;5.9528;5.9262;5.8839;5.6684;5.3325 +;-;-;-;-;-;-;-;-;- + 1780 NaN NaN 252136.9 NaN 17166 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21108 85.41 NaN 369480 35 0 20346 0.261 -1 MKVKTWRF 8 89 556.3079810701495 1110.6014092070989 2 556.3079833984375 MULTI HCD FTMS 0 0 0 21101 97185.28125 0.28150326537665227 40 -0.937225341796875 7 Oxidation (M) _M(Oxidation (M))KVKTWRF_ ENST00000332246.10_1_8:19363479-19442712:-|nuORF;ENST00000397998.7_1_8:19363479-19459293:-|nuORF;ENST00000454498.6_1_8:19363479-19448754:-|nuORF;ENST00000517494.1_2_8:19363479-19615372:-|nuORF 4.75600775471527 0.5349361699807423 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 6 -1 21.515 0 0 1.9373 0 0 0 367.2659349241489 367.2659349241489 6.030768805449185 0 0 0 0 0 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 1.9373 - 755 NaN NaN 152078.5 NaN 17167 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21109 85.414 NaN 341150 35 0 31687 0.261 -1 0 75 585.8127137264215 1169.610874519643 2 586.3150024414062 MULTI HCD FTMS 0 0 0 21101 137571.828125 0.6339967117070961 36 -0.832611083984375 8 NaN NaN 1 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 46.727 0 0 3.9951 0 0 475.2040272443375 0 475.2040272443375 0 21.94537812595911 0 0 0 1.274227503252014 0 0 0.3807196863200844 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.9951 - 215 NaN NaN 134964 NaN 17168 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21110 85.417 NaN 155120 35 0 36662 0.261 + 31929 VYPADVVLF 9 35 511.78126633903776 1021.5479797448755 2 511.78155517578125 MULTI HCD FTMS 0 0 0 21101 73655.2109375 0.44025034852087713 9 -0.1846923828125 9 Unmodified _VYPADVVLF_ ENSG00000130717|ENST00000372215|UCK1;ENSG00000143179|ENST00000367879|UCK2;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-2|UCK1;nc|ENSG00000130717|Q9HA47-3|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 26.88365393820708 0.12808753336095696 1 VV{I|L}{M(Oxidation (M))|F} 4 5 44.553 0 0 4.3613 0 0 545.2492542951187 0 545.2492542951187 0 39.06804392152253 0 0 0 1.5 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.3613 + + 36 NaN NaN 114775.5 NaN 17169 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21111 85.42 NaN 211460 35 0 24408 0.261 + -1 CVHTFEEMPE 10 46 619.2484573352033 1236.4823617372065 2 619.75048828125 MULTI HCD FTMS 0 0 0 21101 80635.6171875 1 0 0 10 Oxidation (M) _CVHTFEEM(Oxidation (M))PE_ REV__ENST00000389912.6_1_14:70809414-70826359:-|nuORF;REV__ENST00000557612.5_1_14:70795945-70826359:-|nuORF 9.38312468134398 0.42334543440173333 1 Y{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1002 0 0 908.3397639713457 0 908.3397639713457 0 8.010299956639813 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 2.1002 - 23 NaN NaN 118400.8 NaN 17170 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21112 85.424 NaN 68237 35 0 4902.2 0.261 + 30847 VQLQYSLNNGK 11 42 632.3394417954838 1262.6643306577676 2 632.3401489257812 MULTI HCD FTMS 0 0 0 21101 14845.953125 0.40371584406898775 1 -0.0393218994140625 11 Unmodified _VQLQYSLNNGK_ ENSG00000189056|ENST00000428762|RELN;nc|ENSG00000189056|P78509-2|RELN;nc|ENSG00000189056|P78509-3|RELN;RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant 10.799506525563784 0.36298595732910816 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 111399.4 NaN 17171 3939 21101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21114 85.428 NaN 1141800 35 0 133480 0.327 -1 0 81 582.7998357176308 1163.5851185020615 2 582.8002319335938 MULTI HCD FTMS 0 0 0 21113 820490.125 0.2410242360791039 6 -0.09648895263671875 1 NaN NaN 1 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 72.461 0 0 6.2274 0 0 0 162.05303245053588 162.05303245053588 43.33109402921255 0 0 0 0 1.8812033112643842 1.5228787452803376 1.8129529932484498 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 6.2274 - 1310 NaN NaN 255767.8 NaN 17172 3940 21113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21115 85.433 NaN 942490 35 0 40850 0.261 -1 0 120 553.8301034429838 1105.6456539527676 2 553.8302612304688 MULTI HCD FTMS 0 0 0 21113 983091.5 0.4773439036797034 41 -0.9468536376953125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.1282 0 0 940.567069213313 0 940.567069213313 0 1.479400086720375 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1282 - 415 + NaN NaN 223649.3 NaN 17173 3940 21113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21116 85.437 NaN 821760 35 0 35456 0.261 + 5083 FEERLKRR 8 108 567.3307443934895 1132.6469358537788 2 567.3306884765625 MULTI HCD FTMS 0 0 0 21113 326421.71875 0.21852470741461769 48 -1.1467361450195312 3 Unmodified _FEERLKRR_ REV__ENSG00000065883|ENST00000181839|CDK13;REV__nc|ENSG00000065883|Q14004-2|CDK13 4.75600775471527 0.5349361699807423 1 [{M(Oxidation (M))|F}E]R{I|L}{M(Oxidation (M))|F} 5 -1 15.225 0 0 1.3442 0 0 0 437.29034340676634 437.29034340676634 0.6208786022107304 0 0 0 0 0 0 0.3252574989159953 0 [{M(Oxidation (M))|F}E]R{I|L}{M(Oxidation (M))|F} 1.3442 - 464 NaN NaN 222765.4 NaN 17174 3940 21113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21117 85.44 NaN 186930 35 0 24172 0.261 + 6803 FPSDLDLDMF 10 52 608.2656513472831 1214.516749761366 2 608.2656860351562 MULTI HCD FTMS 0 0 0 21113 86033.7890625 0.6658921736396234 -7 0.1893768310546875 4 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 53.832793166522166 0.06385051108671999 1 {I|L}D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 68.761 0 0 5.6616 0 0 446.1782704084 0 446.1782704084 0 42.84318117920506 0 0 0 1.805462187404089 0 0.805462187404089 0 + {I|L}D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6616 + + 115 NaN NaN 120657.8 NaN 17175 3940 21113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21119 85.445 NaN 1477000 35 0 192920 0.327 + 13198 KYLVIGDLLF 10 103 590.8522713892568 1179.6899898453134 2 590.8525390625 MULTI HCD FTMS 0 0 0 21118 503611.9375 0.19389995330687165 -7 0.172943115234375 1 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 59.368380827593164 0.04371880213842136 1 [YK]{I|L}V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 71.57 0 0 6.0668 6.0668 85.039 0 0 0 3.979400086720375 15.753027285023506 3.979400086720375 3.979400086720375 0 2.594187677400525 0 0.3054621874040891 0 + + [YK]{I|L}V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]KV{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VK{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[YK]{I|L}V{I|L}GD{I|L}{M(Oxidation (M))|F}{I|L};{I|L}{I|L}[YV]KGD{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}K[YV]GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VTS{I|L}PK{I|L}{M(Oxidation (M))|F};[Y{I|L}]KV{I|L}GD{I|L}{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}[Y{I|L}]S{I|L}PK{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}G{I|L}{I|L}K[YV]{I|L}{M(Oxidation (M))|F} 6.0668;5.7295;4.9635;4.7315;4.4726;4.4375;4.4202;4.3941;4.271;4.0979 +;-;-;-;-;-;-;-;-;- + 4853 NaN NaN 311191.7 NaN 17176 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21120 85.449 NaN 559330 35 0 152290 0.261 + 26877 SYIPSTVFF 9 62 530.7709913062797 1059.5274296793593 2 530.7713623046875 MULTI HCD FTMS 0 0 0 21118 149852.28125 0.3499631665579495 1 -0.03272247314453125 2 Unmodified _SYIPSTVFF_ ENSG00000140830|ENST00000268483|TXNL4B 81.61307344734483 0.005330412723537057 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{[MG]|[TS]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 66.973 0 0 6.321 6.321 92.248 0 0 0 7.147642715192504 58.02046884880937 7.147642715192504 27.73001272063737 0 2.3494850021680094 0 0.7614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{[MG]|[TS]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][DV]{[MG]|[TS]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.321;3.7038 +;- + 233 NaN NaN 175650.5 NaN 17177 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21121 85.453 NaN 274560 35 0 56367 0.263 -1 LACCKGTG 8 58 426.1911002587844 850.3676475843688 2 426.1912536621094 MULTI HCD FTMS 0 0 0 21118 285165.25 0.49359413465320656 3 -0.05493927001953125 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LAC(Carbamidomethyl (C))CKGTG_ ENST00000284136.10_1_7:84710854-84710890:-|nuORF 2.302733041254933 0.5385759549224092 1 {I|L}{I|L} 2 -1 8.5835 0 0 1.0094 0 0 59.03596946183456 562.1386840685707 621.1746535304053 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.0094 - 21 + NaN NaN 124909.6 NaN 17178 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21122 85.456 NaN 483010 35 0 66529 0.261 + 32212 VYTILTVQL 9 65 525.315695639988 1048.616838346776 2 525.31591796875 MULTI HCD FTMS 0 0 0 21118 154194.625 0.2600092342749898 3 -0.05493927001953125 4 Unmodified _VYTILTVQL_ ENSG00000082996|ENST00000392894|RNF13 93.16586880292088 0.00444300900000894 1 [YV]T{I|L}{I|L}TVQ{I|L} 9 0 + 87.062 0 0 8.3025 8.3025 91.964 0 0 0 2.243012119929091 64.84305011473481 2.243012119929091 9.208187539523749 0 2.6549471895720984 0 2.0669015600442577 0 + + [YV]T{I|L}{I|L}TVQ{I|L};[YV]T{I|L}{I|L}TV[AG]{I|L};[YV]T{I|L}T{I|L}VQ{I|L};[YV]T{I|L}T{I|L}V[AG]{I|L} 8.3025;7.4244;7.1269;6.2488 +;-;-;- + 359 NaN NaN 145201 NaN 17179 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21123 85.459 NaN 163870 35 0 6254.3 0.261 + 8078 GILWRVLFF 9 87 575.8422855347827 NaN 0 575.8421630859375 PEAK HCD FTMS 0 0 0 21118 117243.1875 0.4708060983724434 9 -0.1814117431640625 5 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 5.230669730166228 0.26989974671959066 1 N 1 9 3.0989 0 0 0.26955 0 0 167.11564333382597 865.4648531549436 1032.5804964887695 0 0 0 0 0 0 0 0 0 N 0.26955 - 28 + NaN NaN 104800.6 NaN 17180 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21124 85.463 NaN 347640 35 0 29989 0.261 + 34981 YSSHSSTLLC 10 73 549.2499055420718 NaN 0 548.7654418945312 PEAK HCD FTMS 0 0 0 21118 99048.6875 0.9994072877514307 1 -0.03272247314453125 6 Unmodified _YSSHSSTLLC_ ENSG00000159433|ENST00000290607|STARD9 29.081581746732265 0.20707020642974738 1 {I|L}TS 3 9 21.331 0 0 1.9454 0 0 234.10142133629353 558.1972139947874 792.298635331081 0 0 0 0 0 1.079689690656103 0 0.2742275032520141 0 {I|L}TS 1.9454 - 578 + NaN NaN 131991.2 NaN 17181 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21125 85.466 NaN 322760 35 0 34063 0.261 -1 MPSILADVF 9 60 504.75720484100754 1007.4998567488151 2 504.7574157714844 MULTI HCD FTMS 0 0 0 21118 44655.3359375 0.35914512411558075 3 -0.05493927001953125 7 Oxidation (M) _M(Oxidation (M))PSILADVF_ ENSG00000125676|ENST00000245838|THOC2 15.847184025352803 0.2234401846867398 1 DV{M(Oxidation (M))|F} 3 -1 32.065 0 0 3.1826 0 0 628.3218861310562 0 628.3218861310562 0 4.6421059732441705 0 0 0 0.8252574989159953 0 0 0 DV{M(Oxidation (M))|F} 3.1826 + + 80 NaN NaN 123641 NaN 17182 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21126 85.469 NaN 182380 35 0 23639 0.261 + -1 CVHTFEEMPE 10 49 619.2484573352033 1236.4823617372065 2 619.247802734375 MULTI HCD FTMS 0 0 0 21118 113650.640625 1 0 0 8 Oxidation (M) _CVHTFEEM(Oxidation (M))PE_ REV__ENST00000389912.6_1_14:70809414-70826359:-|nuORF;REV__ENST00000557612.5_1_14:70795945-70826359:-|nuORF 13.042465956692817 0.38911719078024076 1 VQMY{M(Oxidation (M))|F} 5 -1 31.95 0 0 2.5839 0 0 550.1550964722211 0 550.1550964722211 0 10.980910146099774 0 0 0 1.8182503180159344 0 0 0 VQMY{M(Oxidation (M))|F} 2.5839 - 41 NaN NaN 106973 NaN 17183 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21127 85.473 NaN 294110 35 0 20220 0.261 + 19786 NYAWVYYHL 9 67 614.7943040834457 1227.5740552336913 2 614.7942504882812 MULTI HCD FTMS 0 0 0 21118 49760.4921875 0.2490489026094102 41 -0.950164794921875 9 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 24.990960013464015 0.14443998892849796 1 [YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10 4 + 50.864 0 0 4.1434 4.1434 82.271 0 0 0 19.353415603609747 25.189549981487076 19.353415603609747 4.771212547196626 0 1.5 1.3979400086720375 0 0 [YN]AWV[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[PG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWVVV{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F};[YN]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}[RP]H{[RE]|[WV]};[Y{I|L}]N{[QD]|[EN]|[WG]|[KD]|[RS]}[PG]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][DP][W{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][WY]{I|L}[DP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.1434;3.7548;3.4909;3.1854;2.4212;2.3104;2.2778;1.3524;0.78299 -;-;-;-;-;-;-;-;- 469 NaN NaN 132245.1 NaN 17184 3941 21118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21129 85.477 NaN 180650 35 0 12606 0.327 + 28283 TLPTRPRWE 9 67 578.3182984638746 1154.6220439945491 2 578.3191528320312 MULTI HCD FTMS 0 0 0 21128 28885.7578125 0.07916269608914922 8 -0.14868927001953125 1 Unmodified _TLPTRPRWE_ ENSG00000084693|ENST00000360131|AGBL5;ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF;nc|ENSG00000084693|Q8NDL9-2|AGBL5;nc|ENSG00000084693|Q8NDL9-3|AGBL5 11.640296217721598 0.25978676193971967 1 [{I|L}T]PT{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]V 8 5 30.935 0 0 2.6792 0 0 0 219.13396900105786 219.13396900105786 8.027646714607357 0 0 0 0 0 0 1.1549471895720984 0 [{I|L}T]PT{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]V 2.6792 - 277 NaN NaN 109587.3 NaN 17185 3942 21128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21130 85.482 NaN 154450 35 0 20695 0.262 + 12237 KLERTKAQ 8 48 487.2931275951302 972.5717022570605 2 487.2930603027344 MULTI HCD FTMS 0 0 0 21128 87021.8984375 0.4218705995190613 -6 0.14678192138671875 2 Unmodified _KLERTKAQ_ REV__ENST00000535325.5_1_3:45960268-45960403:-|nuORF 2.0597508629832335 0.5389364538378849 1 E 1 -1 0.71334 0 0 0.073345 0 0 561.3689262334261 279.1444491022094 840.5133753356356 0 0 0 0 0 0 0 0 0 E 0.073345 + + 7 + NaN NaN 105706 NaN 17186 3942 21128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21131 85.485 NaN 123910 35 0 17195 0.261 -1 MPDYMILQEL 10 46 634.7986536364031 1267.582754339606 2 634.7994995117188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 22.65808497894818 0.29917593477267174 1 {I|L}QE{I|L} 4 -1 45.745 0 0 3.6089 0 0 766.301561424025 0 766.301561424025 0 35.28782221775522 0 0 0 1.3807196863200843 0 0 0 {I|L}QE{I|L} 3.6089 + + 32 NaN NaN 92803.5 NaN 17187 3942 21128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21133 85.49 NaN 356040 35 0 13436 0.327 -1 0 96 589.3428745332129 1176.6711961332257 2 589.34326171875 MULTI HCD FTMS 0 0 0 21132 76458.0546875 0.1528675739202803 7 -0.13591766357421875 1 NaN NaN 1 W 1 -1 11.42 0 0 0.97053 0 0 972.5819455002164 0 972.5819455002164 0 0.9354332167857216 0 0 0 0 0 0 0 W 0.97053 - 154 + NaN NaN 140204.2 NaN 17188 3943 21132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21134 85.495 NaN 239590 35 0 59373 0.262 + 21062 PLWEYVAI 8 74 495.768292902826 989.522032872452 2 495.768798828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PLWEYVAI_ REV__ENSG00000137857|ENST00000389037|DUOX1;REV__ENSG00000140279|ENST00000389039|DUOX2;REV__nc|ENSG00000140279|Q9NRD8|DUOX2 19.438996006549623 0.45076845602799126 1 WVA{I|L} 4 -1 37.167 0 0 3.7561 0 0 502.257127830275 0 502.257127830275 0 27.703037561203843 0 0 0 1 0 0 0 WVA{I|L} 3.7561 - 64 NaN NaN 109989.9 NaN 17189 3943 21132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21136 85.499 NaN 1537300 35 0 47175 0.327 -1 0 117 545.3168208601961 1088.6190887871921 2 545.3168334960938 MULTI HCD FTMS 0 0 0 21135 1606396.625 0.4455914844803036 30 -0.6926040649414062 1 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YK][VS]V{M(Oxidation (M))|F} 9 -1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YK][VS]V + + 13.979 -4.3478 -0.47077 1.2841 1.2841 58.832 0 0 0 0 1.435078169319297 0 0 0 0 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YK][VS]V{M(Oxidation (M))|F} 1.2841 - 456 + NaN NaN 327009.2 NaN 17190 3944 21135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21137 85.504 NaN 1197900 35 0 32034 0.261 -1 SFSYSSGLLM 10 135 554.2529062921411 1106.4912596510821 2 554.2532958984375 MULTI HCD FTMS 0 0 0 21135 197988.5 1 0 0 2 Oxidation (M) _SFSYSSGLLM(Oxidation (M))_ ENSG00000278318|ENST00000614049|ZNF229;nc|ENSG00000278318|Q9UJW7-2|ZNF229 32.30548876998284 0.21217886106551395 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[MS]|[{M(Oxidation (M))|F}A]}T{M(Oxidation (M))|F} 10 -1 + 38.058 0 0 3.4395 3.4395 80.758 0 0 0 15.228787452803374 29.041651881623807 15.228787452803374 3.041134294324131 0 1.5941876774005248 1.0969100130080565 0.850576203518622 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[MS]|[{M(Oxidation (M))|F}A]}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}[MT]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[MT]R{[MS]|[{M(Oxidation (M))|F}A]}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{[CT]|[{M(Oxidation (M))|F}G]}{[MS]|[{M(Oxidation (M))|F}A]}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[MT]R[MT]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{[DA]|[EG]}SYS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{[CT]|[{M(Oxidation (M))|F}G]}[MT]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[YC(Carbamidomethyl (C))]VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[CP]|[EA]}{[YC]|[HE]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[YC(Carbamidomethyl (C))]{I|L}S{M(Oxidation (M))|F} 3.4395;3.1647;2.4613;2.3922;2.1865;2.1329;2.1174;1.9161;1.7233;1.6413 -;-;-;-;-;-;-;-;-;- 1753 NaN NaN 265875.3 NaN 17191 3944 21135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21139 85.509 NaN 495100 35 0 44623 0.327 + 7201 FSLTYDFGF 9 80 548.7513782510617 1095.4882035689234 2 549.24951171875 MULTI HCD FTMS 0 0 0 21138 110855.6171875 0.38520541184442275 -3 0.03160858154296875 1 Unmodified _FSLTYDFGF_ REV__ENST00000394054.6_1_3:101579486-101579642:+|nuORF 23.1484247019978 0.1603590852062899 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T 4 -1 29.781 0 0 2.7185 0 0 0 644.2325022351921 644.2325022351921 6.667184309669878 0 0 0 0 0 2 0.2614393726401688 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T 2.7185 + + 716 NaN NaN 155271.6 NaN 17192 3945 21138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21140 85.513 NaN 256800 35 0 25536 0.261 + 27282 SYQDFFEAI 9 66 560.2536199032421 1118.4926868732841 2 560.2529296875 MULTI HCD FTMS 0 0 0 21138 57651.6171875 0.022602399055822536 14 -0.316162109375 2 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 20.41453444215458 0.18397929046831515 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 5 4 44.53 0 0 3.9813 0 0 493.2188893048844 0 493.2188893048844 0 26.571406706489746 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 3.9813 + + 80 NaN NaN 122405.3 NaN 17193 3945 21138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21141 85.517 NaN 116490 35 0 11933 0.261 + 19979 NYIDIVKYVF 10 48 637.3451989415546 1272.675844949909 2 637.3461303710938 MULTI HCD FTMS 0 0 0 21138 44534.80078125 0.1437107291321179 10 -0.208343505859375 3 Unmodified _NYIDIVKYVF_ ENSG00000162408|ENST00000377705|NOL9 15.738622578938676 0.3638982514236938 1 [YN]{I|L} 3 7 25.915 0 0 2.0363 0 0 0 879.4624727838499 879.4624727838499 4.9460496811329335 0 0 0 0 0.5 1.5228787452803376 0 0 + [YN]{I|L} 2.0363 + + 5 + NaN NaN 99663.9 NaN 17194 3945 21138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21142 85.52 NaN 140010 35 0 14646 0.261 -1 MYPDLSELLM 10 57 622.2833494289625 1242.552145924725 2 622.284423828125 MULTI HCD FTMS 0 0 0 21138 32427.35546875 0.3545658310634989 -3 0.03160858154296875 4 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 22.736283301280096 0.29844449404982915 1 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 57.598 0 0 4.6354 0 0 0 162.02501701089218 162.02501701089218 45.25498204434899 0 0 0 0 1.3494850021680094 1.5228787452803376 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 4.6354 - 70 NaN NaN 101766.9 NaN 17195 3945 21138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21144 85.525 NaN 289470 35 0 121090 0.327 -1 0 59 562.3437846650287 561.3365081984286 1 562.3440551757812 MULTI HCD FTMS 0 0 0 21143 104908.15625 0.5056557250499886 -2 0.0252685546875 1 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T 4 -1 28.02 0 0 4.9917 0 0 0 110.08126462836927 110.08126462836927 13.071968632008435 0 0 0 0 0.2614393726401688 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T 4.9917 - 15 NaN NaN 122169 NaN 17196 3946 21143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21145 85.529 NaN 271820 35 0 24041 0.261 + 19097 NFDNILNSF 9 67 542.2591139476608 1082.5036749621215 2 542.2587890625 MULTI HCD FTMS 0 0 0 21143 46093.90234375 0.10703763017002745 7 -0.14975738525390625 2 Unmodified _NFDNILNSF_ ENSG00000186815|ENST00000335509|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;nc|ENSG00000186815|Q9ULQ1-3|TPCN1 76.82478488871298 0.006879825292024087 1 {I|L}{I|L}NS{M(Oxidation (M))|F} 5 4 54.719 0 0 5.0549 0 0 490.18142262012776 0 490.18142262012776 0 36.77408528729529 0 0 0 1.6382104921644451 0 0.6549471895720984 0.3807196863200844 + {I|L}{I|L}NS{M(Oxidation (M))|F} 5.0549 + + 355 + NaN NaN 131501.5 NaN 17197 3946 21143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21146 85.533 NaN 128000 35 0 26419 0.261 + 133 AEDLVANFF 9 43 513.2502094581473 1024.4858659830945 2 513.2510986328125 MULTI HCD FTMS 0 0 0 21143 50904.171875 0.9788918209768736 -2 0.0252685546875 3 Unmodified _AEDLVANFF_ ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-2|PSME3;nc|ENSG00000131467|P61289-3|PSME3 32.78568957990786 0.09846250359632436 1 VAN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 51.938 0 0 5.0697 0 0 428.1903553693375 0 428.1903553693375 0 30.969100130080562 0 0 0 1.8494850021680094 0 0 0 + VAN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0697 + + 70 NaN NaN 123803.6 NaN 17198 3946 21143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21148 85.538 NaN 2324600 35 0 111610 0.327 + 26980 SYLPFTEAF 9 92 537.7598978105991 1073.5052426879981 2 538.2584228515625 MULTI HCD FTMS 0 0 0 21147 841570.125 0.4932282011593853 -1 0.0128173828125 1 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 103.74828524460852 0.00396301343438984 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))TKA{M(Oxidation (M))|F} 9 4 + 62.691 0 0 5.8399 5.8399 86.022 0 0 0 3.4230015403880643 9.821071206546037 3.4230015403880643 7.073507628719341 0 0.7614393726401688 1.5228787452803376 0.6549471895720984 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))TKA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[CG]TKA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PC{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}PT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[QS]|[NT]}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TEA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}STKA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[SA]|[TG]}Q{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TQ[YT]SQ 5.8399;5.181;4.9821;4.8013;4.7848;4.7303;4.4732;4.3761;4.2966;4.1722 -;-;-;-;-;-;-;-;-;- 6085 NaN NaN 440307.5 NaN 17199 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21149 85.542 NaN 234410 35 0 25671 0.261 + 13466 KYPENFFLL 9 54 585.8133314392081 1169.6121099452162 2 585.8131103515625 MULTI HCD FTMS 0 0 0 21147 116080.765625 0.43732646263507424 -56 1.1398773193359375 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 27.223235318498237 0.1251536255799991 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 44.217 0 0 3.7805 3.7805 84.53 0 0 0 2.534241220071536 19.80422849943416 2.534241220071536 9.208187539523749 0 1.555462187404089 0 0 0 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][WE][TA]{M(Oxidation (M))|F}{I|L}{I|L};[YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L};[YK][WE]{M(Oxidation (M))|F}[TA]{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 3.7805;2.9932;2.7723;2.6895;2.1518;1.6636 +;-;-;-;-;- + 153 NaN NaN 112518.5 NaN 17200 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21150 85.546 NaN 207880 35 0 56061 0.261 + 5992 FPDQVQDLVF 10 43 604.3031243520578 1206.5916957709155 2 604.3035888671875 MULTI HCD FTMS 0 0 0 21147 69283.9921875 0.2952543438258561 10 -0.2352294921875 3 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 9.5439744041441 0.42184090036563754 1 Q{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 5 5 31.466 0 0 2.6078 0 0 586.2745228498062 0 586.2745228498062 0 24.47621246364342 0 0 0 0.9247425010840047 0 0 0 + Q{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 2.6078 + + 14 NaN NaN 113367.1 NaN 17201 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21151 85.549 NaN 201370 35 0 9030.4 0.261 -1 LPEPVPLSML 10 73 556.308216720427 NaN 0 556.30859375 PEAK HCD FTMS 0 0 0 21147 53988.98828125 0.4000259386839843 -1 0.0128173828125 4 Oxidation (M) _LPEPVPLSM(Oxidation (M))L_ ENST00000176763.9_1_5:171470934-171471408:-|nuORF 6.723162845929126 0.3344301934401713 1 K 1 -1 7.2185 0 0 0.64996 0 0 326.1986955484727 653.2703951471311 979.4690906956039 0 0 0 0 0 0.2614393726401688 0 0 0 K 0.64996 - 129 + NaN NaN 105583.1 NaN 17202 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21152 85.552 NaN 323010 35 0 22048 0.261 -1 STMVYCCASF 10 81 564.2161859907247 1126.4178190482494 2 564.7145385742188 MULTI HCD FTMS 0 0 0 21147 53543.359375 0.23127232562257982 -7 0.10930633544921875 5 Oxidation (M) _STM(Oxidation (M))VYCCASF_ nc|ENSG00000106078|O75128-5|COBL 6.723162845929126 0.4397169348982109 1 N{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 2.1921 0 0 734.2154092355526 0 734.2154092355526 0 6.276362525516529 0 0 0 0 0 0 0 N{I|L}{M(Oxidation (M))|F} 2.1921 - 71 + NaN NaN 129633.3 NaN 17203 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21153 85.556 NaN 146020 35 0 15556 0.261 + 11055 IYFTDREHF 9 47 614.293389579463 1226.572226225726 2 614.29541015625 MULTI HCD FTMS 0 0 0 21147 42133.921875 0.3735579211830856 21 -0.5060272216796875 6 Unmodified _IYFTDREHF_ REV__ENSG00000125304|ENST00000376387|TM9SF2;REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant 10.823927491677226 0.26684000660059787 1 [Y{I|L}]YW{I|L}W 6 -1 34.57 0 0 2.8184 0 0 0 299.1145113580688 299.1145113580688 7.658715643802765 0 0 0 0 1.0924778212679485 2 0 0 [Y{I|L}]YW{I|L}W 2.8184 - 113 + NaN NaN 124795.2 NaN 17204 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21154 85.559 NaN 113320 35 0 23510 0.263 + 29973 VFIICIVIA 9 44 495.8061885846989 989.5978242361978 2 495.806640625 MULTI HCD FTMS 0 0 0 21147 64205.078125 0.42799992625584576 -1 0.0128173828125 7 Unmodified _VFIICIVIA_ ENSG00000105426|ENST00000262963|PTPRS;ENSG00000153707|ENST00000381196|PTPRD;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;ENST00000589851.1_1_19:5219319-5220009:-|nuORF;nc|ENSG00000105426|Q13332-2|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD 5.230669730166228 0.3113646817964458 1 YV[{I|L}A] 4 6 10.177 0 0 1.0284 0 0 525.3240032906884 0 525.3240032906884 0 0.7133375178436552 0 0 0 0 0 0 0 YV[{I|L}A] 1.0284 - 27 + NaN NaN 100050.4 NaN 17205 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21155 85.562 NaN 115060 35 0 11546 0.261 + 16576 LVEPIELTV 9 41 506.799559600719 NaN 0 506.75909423828125 PEAK HCD FTMS 0 0 0 21147 20181.419921875 0.7258343445696173 -1 0.0128173828125 8 Unmodified _LVEPIELTV_ REV__nc|ENSG00000224287|P0C860|MSL3B 6.723162845929126 0.26266733336404485 1 {I|L} 1 -1 11.99 0 0 1.1852 0 0 218.12721776756774 677.3507174127561 895.4779351803238 0 0 0 0 0 0.5 0 0 0 {I|L} 1.1852 + + 1 + NaN NaN 101139.9 NaN 17206 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21156 85.566 NaN 38666 35 0 5986.7 0.261 + 28916 TWMMLYPQRM 10 22 452.8802966168665 NaN 0 452.8804016113281 PEAK HCD FTMS 0 0 0 21147 9667.20703125 0.38512943975435676 1 -0.03606414794921875 9 Unmodified _TWMMLYPQRM_ REV__ENST00000528501.5_1_11:47834563-47834888:-|nuORF 0.6268255596534771 0.33964781322640114 1 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.38671 0 0 469.5490320991642 284.1040133111938 753.653045410358 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.38671 + + 2 + NaN NaN 78819.9 NaN 17207 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21157 85.569 NaN 62448 35 0 12353 0.261 -1 0 45 471.35390098401876 NaN 0 471.2802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 NaN NaN 1 H 1 -1 3.9794 0 0 0.42303 0 0 583.504327991672 217.10805689029533 800.6123848819673 0 0 0 0 0 0 0 0 0 H 0.42303 - 3 + NaN NaN 91224.3 NaN 17208 3947 21147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21159 85.574 NaN 273480 35 0 29319 0.327 -1 0 66 582.7998357176308 1163.5851185020615 2 582.7999267578125 MULTI HCD FTMS 0 0 0 21158 326031.96875 0.09577398168605018 14 -0.32311248779296875 1 NaN NaN 1 {I|L}PTWPVW 7 -1 40.705 0 0 3.4983 0 0 266.126268455275 0 266.126268455275 0 16.012517455754534 0 0 0 1.5924778212679485 0 0 0 {I|L}PTWPVW 3.4983 - 238 NaN NaN 125807.3 NaN 17209 3948 21158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21160 85.578 NaN 94686 35 0 9018.7 0.261 + -1 YNIKHFFMK 9 45 622.316817459094 1242.6190819849878 2 622.3145751953125 MULTI HCD FTMS 0 0 0 21158 42482.69140625 1 0 0 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 1 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 50.34 0 0 4.0511 0 0 0 162.0901366848374 162.0901366848374 34.14197490877392 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 4.0511 - 67 NaN NaN 97906 NaN 17210 3948 21158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21161 85.582 NaN 67878 35 0 7586.2 0.262 + 23309 RIREAAPSI 9 36 506.799559600719 NaN 0 506.8000183105469 PEAK HCD FTMS 0 0 0 21158 27804.443359375 1 0 0 3 Unmodified _RIREAAPSI_ REV__ENSG00000080493|ENST00000264485|SLC4A4;REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;REV__nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;REV__SLC4A4|p.V1042Sfs*5|1|0.3|ENSG00000080493|chr4:71563811-71563812|-/A|frameshift_variant;REV__SLC4A4|p.V138Wfs*24|1|0.08|ENSG00000080493|chr4:71349929-71349929|A/-|frameshift_variant 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105025.5 NaN 17211 3948 21158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21163 85.587 NaN 1336600 35 0 219530 0.327 + 13199 KYLVIGDLLF 10 61 590.8522713892568 1179.6899898453134 2 590.8526611328125 MULTI HCD FTMS 0 0 0 21162 915849.1875 0.352618954137453 1 -0.03946685791015625 1 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 51.41523569358685 0.07264263333115425 1 V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F} 7 3 76.591 0 0 6.4925 0 0 404.24168593574376 0 404.24168593574376 0 57.71704991624928 0 0 0 3.06295299324845 0 0 0 + V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F} 6.4925 + + 846 NaN NaN 162552.2 NaN 17212 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21164 85.591 NaN 902900 35 0 33674 0.261 + 11221 IYLDELQVI 9 110 553.3109462937842 1104.6073396543684 2 553.8302612304688 MULTI HCD FTMS 0 0 0 21162 45465.8671875 0.4147690078345711 -5 0.087005615234375 2 Unmodified _IYLDELQVI_ ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF 23.789781309258295 0.1548179064208189 1 {I|L}QV{I|L} 4 5 41.983 0 0 3.8007 0 0 633.3007827332988 0 633.3007827332988 0 28.003122090841828 0 0 0 1.1549471895720984 0 0 0 + {I|L}QV{I|L} 3.8007 + + 769 NaN NaN 227711.6 NaN 17213 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21165 85.595 NaN 477060 35 0 20456 0.261 + 28448 TPKVHPRGKN 10 110 567.3307443934895 1132.6469358537788 2 567.33056640625 MULTI HCD FTMS 0 0 0 21162 190106.46875 0.1272677584699468 57 -1.395477294921875 3 Unmodified _TPKVHPRGKN_ REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant;REV__ENSG00000141994|ENST00000309061|DUS3L;REV__ENST00000589854.1_1_19:5790042-5791152:-|nuORF;REV__nc|ENSG00000141994|Q96G46-2|DUS3L 5.731851221503515 0.44496410492002586 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3671 0 0 967.5680917149101 0 967.5680917149101 0 -1.2244545438739252 -1.2244545438739252 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3671 - 648 + NaN NaN 159060.3 NaN 17214 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21166 85.598 NaN 699870 35 0 118620 0.261 + 29514 TYVTILPEL 9 56 524.7999065637616 1047.5852601943232 2 524.7999877929688 MULTI HCD FTMS 0 0 0 21162 178573.84375 0.21895668136400812 -5 0.087005615234375 4 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 71.92227651296345 0.008466197542043549 1 [YT]VT{I|L}{I|L}[EP]{I|L} 9 0 + 72.896 0 0 6.9585 6.9585 93.02 0 0 0 19.704999916446795 43.792484015650075 19.704999916446795 22.526975159433533 0 2.2059771852360797 1.5228787452803376 0.8494850021680094 0 + + [YT]VT{I|L}{I|L}[EP]{I|L};[YT]V{I|L}{I|L}T[EP]{I|L} 6.9585;4.8082 +;- + 268 NaN NaN 187418.1 NaN 17215 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21167 85.601 NaN 205540 35 0 19491 0.261 + 20479 PCLQGTILSE 10 60 530.7709913062797 1059.5274296793593 2 531.7899780273438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PCLQGTILSE_ ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF 10.073929032068715 0.4168838835836452 1 ET[{M(Oxidation (M))|F}V]{I|L}AAY{M(Oxidation (M))|F} 9 10 + 34.09 0 0 3.2175 3.2175 79.257 0 0 0 14.882287586051113 8.873949984654253 8.873949984654253 0.28028723600244376 0 0 0 0.4247425010840047 0 ET[{M(Oxidation (M))|F}V]{I|L}AAY{M(Oxidation (M))|F};ET[{I|L}P]YKY{M(Oxidation (M))|F} 3.2175;3.1911 -;- 125 + NaN NaN 114860.7 NaN 17216 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21168 85.605 NaN 174420 35 0 50492 0.261 -1 VLEVCIVI 8 32 493.7831574128934 985.5517618925868 2 493.78350830078125 MULTI HCD FTMS 0 0 0 21162 58232.50390625 0.25740176443632073 1 -0.03946685791015625 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))VLEVC(Carbamidomethyl (C))IVI_ ENST00000361776.5_1_1:42660731-42664801:-|nuORF 13.50788311687929 0.4944073034352369 1 {I|L}V{I|L} 3 -1 36.198 0 0 3.6729 0 0 642.3017445294937 0 642.3017445294937 0 36.197887582883936 0 0 0 1 0 0 0 {I|L}V{I|L} 3.6729 + + 22 NaN NaN 117718 NaN 17217 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21169 85.608 NaN 152710 35 0 9388.1 0.261 -1 0 73 597.8564781435832 1193.6984033539663 2 597.8557739257812 MULTI HCD FTMS 0 0 0 21162 83508.21875 0.14103086583162655 -24 0.5872421264648438 7 NaN NaN 1 D 1 -1 7.7866 0 0 0.65231 0 0 105.07969574206466 970.5435274713499 1075.6232232134146 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.65231 - 28 + NaN NaN 109647.9 NaN 17218 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21170 85.611 NaN 184300 35 0 33669 0.264 -1 LACCKGTG 8 51 426.1911002587844 850.3676475843688 2 426.1912841796875 MULTI HCD FTMS 0 0 0 21162 52682.953125 0.09118921978996326 10 -0.23854827880859375 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LAC(Carbamidomethyl (C))CKGTG_ ENST00000284136.10_1_7:84710854-84710890:-|nuORF 2.302733041254933 0.5385759549224092 1 {I|L}{I|L} 2 -1 9.464 0 0 1.1129 0 0 59.03599038947022 562.1409395807249 621.1769299701951 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1129 - 12 + NaN NaN 108444.4 NaN 17219 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21171 85.615 NaN 170380 35 0 25935 0.261 + 6804 FPSDLDLDMF 10 40 608.2656513472831 1214.516749761366 2 608.265869140625 MULTI HCD FTMS 0 0 0 21162 63653.15625 0.49266850892203873 1 -0.03946685791015625 9 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 56.17704186161178 0.05532499666593632 1 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 60.261 0 0 4.9617 0 0 559.2643773962426 0 559.2643773962426 0 43.43826579239625 0 0 0 1.8494850021680094 0 0.3807196863200844 0 + D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9617 + + 97 NaN NaN 109055.6 NaN 17220 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21172 85.618 NaN 65523 35 0 3836.8 0.261 + 22901 QYPVIIHLIW 10 44 641.37151439741 NaN 0 641.3716430664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 7.289230182591677 0.3339457182549222 1 S 1 10 9.6041 0 0 0.74989 0 0 204.08903842233013 986.5856417291624 1190.6746801514926 0 0 0 0 0 0 0 0.5 0 S 0.74989 - 3 + NaN NaN 96857.1 NaN 17221 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21173 85.621 NaN 66386 35 0 8277.7 0.264 + -1 DRKGGPFC 8 42 468.7232112558909 NaN 0 468.7230529785156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Carbamidomethyl (C) _DRKGGPFC(Carbamidomethyl (C))_ REV__ENSG00000140876|ENST00000268533|NUDT7;REV__nc|ENSG00000140876|P0C024-3|NUDT7 2.8892196856762586 0.38822285293237185 1 V 1 -1 4.6041 0 0 0.49219 0 0 130.0272197756505 703.3165987604124 833.3438185360628 0 0 0 0 0 0 0 0 0 V 0.49219 - 1 + NaN NaN 90996.5 NaN 17222 3949 21162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21175 85.626 NaN 135930 35 0 7574.8 0.327 -1 0 64 575.8429950900887 1149.6714372469773 2 575.8424072265625 MULTI HCD FTMS 0 0 0 21174 96791.5546875 0.0523597295759966 -39 0.944854736328125 1 NaN NaN 1 D 1 -1 6.9897 0 0 0.60797 0 0 627.3749417409211 404.259185567023 1031.6341273079443 0 0 0 0 0 0 0 0 0 D 0.60797 - 36 + NaN NaN 108371.8 NaN 17223 3950 21174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21176 85.631 NaN 622960 35 0 69994 0.261 + -1 FSIYPGPRC 9 85 548.7666054204772 1095.5186579077542 2 549.2498168945312 MULTI HCD FTMS 0 0 0 21174 14876.4228515625 0.07985406409084779 13 -0.29694366455078125 2 Carbamidomethyl (C) _FSIYPGPRC(Carbamidomethyl (C))_ REV__ENST00000453424.6_1_10:45952730-45952829:-|nuORF 10.823927491677226 0.26684000660059787 1 C{I|L}CY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{M(Oxidation (M))|F} 8 -1 36.363 0 0 3.3192 0 0 147.11266309714068 0 147.11266309714068 0 22.180475292681265 0 0 0 0 0 0.4247425010840047 0 C{I|L}CY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{M(Oxidation (M))|F} 3.3192 - 635 + NaN NaN 181940.7 NaN 17224 3950 21174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21177 85.634 NaN 169440 35 0 22254 0.261 + 5228 FFDAQEVLL 9 47 541.2820574911088 1080.5495620490176 2 541.2821044921875 MULTI HCD FTMS 0 0 0 21174 53785.58203125 0.5620133494359013 2 -0.0389251708984375 3 Unmodified _FFDAQEVLL_ ENSG00000070882|ENST00000313367|OSBPL3;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6 34.40172386719151 0.0910440009062557 1 T[MN]EV{I|L}{I|L} 7 5 55.01 0 0 5.0909 0 0 262.13090712715 0 262.13090712715 0 46.42622273982376 0 0 0 1.3807196863200843 0 0.3807196863200844 0.805462187404089 T[MN]EV{I|L}{I|L} 5.0909 - 76 NaN NaN 101423.6 NaN 17225 3950 21174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21179 85.639 NaN 1004900 35 0 35175 0.327 -1 0 119 545.3168208601961 1088.6190887871921 2 545.3170166015625 MULTI HCD FTMS 0 0 0 21178 998208.75 0.27688885285956594 37 -0.9362106323242188 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2841 0 0 923.5403972362141 0 923.5403972362141 0 1.3155999968328285 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2841 - 228 + NaN NaN 240176.6 NaN 17226 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21180 85.643 NaN 1087100 35 0 299700 0.261 + 1324 AYPEYLITF 9 65 558.784318404542 1115.5540838758839 2 558.7844848632812 MULTI HCD FTMS 0 0 0 21178 475468.625 0.04585345320503034 -9 0.16152191162109375 2 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 107.99703571036002 0.003269392969029945 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 77.317 0 0 6.9308 6.9308 92.673 0 0 0 10.19672784728506 49.52561882712928 10.19672784728506 19.987737688117235 0 2.6989700043360187 1.3979400086720375 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}Y{I|L}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}V]{[ET]|[MV]}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}Y{I|L}[{M(Oxidation (M))|F}T]{I|L};Q[HV]KY{[CP]|[EA]}{[QN]|[E{I|L}]|[KN]} 6.9308;5.1391;5.0791;3.9054;3.0226;2.1137;2.0536;1.2487 +;-;-;-;-;-;-;- + 394 NaN NaN 245345.9 NaN 17227 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21181 85.647 NaN 230170 35 0 23106 0.261 + 23106 RETLKKQA 8 60 487.2931275951302 972.5717022570605 2 487.2931213378906 MULTI HCD FTMS 0 0 0 21178 192005.109375 0.9308152552076319 3 -0.06233978271484375 3 Unmodified _RETLKKQA_ REV__tr|U7SYS6|U7SYS6_FUSNUtRNA(guanine-N(1)-)-methyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00919PE=4SV=1 2.577480529830294 0.5381683276125971 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 3 -1 4.437 0 0 0.45621 0 0 0 549.3281164018448 549.3281164018448 4.436974992327125 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 0.45621 - 8 NaN NaN 108243.5 NaN 17228 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21182 85.65 NaN 302970 35 0 29083 0.261 + 3769 ENYPHFFL 8 62 533.7534184399218 1065.4922839466435 2 533.7536010742188 MULTI HCD FTMS 0 0 0 21178 79207.3515625 0.7203437656820765 3 -0.06233978271484375 4 Unmodified _ENYPHFFL_ ENSG00000197872|ENST00000381323|CYRIA 15.847184025352803 0.47719562709667024 1 SA{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{I|L} 6 5 62.657 0 0 5.8805 0 0 345.13121230293126 0 345.13121230293126 0 47.900990676322905 0 0 0 2.3807196863200843 0 0.8494850021680094 0 SA{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{I|L} 5.8805 - 328 NaN NaN 132612.8 NaN 17229 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21183 85.654 NaN 324430 35 0 26758 0.261 + 11056 IYFTDREHF 9 64 614.293389579463 1226.572226225726 2 614.7935791015625 MULTI HCD FTMS 0 0 0 21178 48827.0625 0.3855264425695594 -9 0.16152191162109375 5 Unmodified _IYFTDREHF_ REV__ENSG00000125304|ENST00000376387|TM9SF2;REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant 13.90604991867851 0.24021115267848145 1 [YN]AW[RP]HH{M(Oxidation (M))|F} 9 -1 + 49.408 0 0 4.0281 4.0281 81.231 0 0 0 2.990984809501704 7.269987279362624 2.990984809501704 2.990984809501704 0 0.3494850021680094 1.5228787452803376 0 0.6861818737241735 [YN]AW[RP]HH{M(Oxidation (M))|F};[Y{I|L}][DP]{I|L}ADHH{M(Oxidation (M))|F};[Y{I|L}]EEV[PG]HH{M(Oxidation (M))|F};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}QH{M(Oxidation (M))|F};[Y{I|L}]YD{[QN]|[E{I|L}]|[KN]}KH{M(Oxidation (M))|F};[Y{I|L}]EE[R{M(Oxidation (M))|F}]SH{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[NG]KH{M(Oxidation (M))|F} 4.0281;3.7843;2.8802;2.8385;2.8385;2.7366;2.6656;2.522 -;-;-;-;-;-;-;- 647 NaN NaN 128544.9 NaN 17230 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21184 85.657 NaN 149920 35 0 12139 0.261 -1 FCSDFKTIW 9 41 602.2773057183576 1202.5400585035152 2 602.27685546875 MULTI HCD FTMS 0 0 0 21178 33251.75 0.49003855626765014 1 -0.026092529296875 6 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SDFKTIW_ ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1 14.838274106304384 0.23215694253501695 1 Y{M(Oxidation (M))|F}T{I|L}W 5 -1 52.435 0 0 4.3604 0 0 474.1884482513652 0 474.1884482513652 0 46.95046257204389 0 0 0 1.9247425010840047 0 0 0 Y{M(Oxidation (M))|F}T{I|L}W 4.3604 - 104 + NaN NaN 108908.5 NaN 17231 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21185 85.66 NaN 70705 35 0 5726 0.261 + 30304 VKRIPWPQCF 10 37 637.3455915039076 1272.676630074615 2 637.3457641601562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VKRIPWPQCF_ REV__ENST00000414406.2_1_12:20095069-20095366:+|nuORF 1.6526216038709556 0.46655611578153744 1 {I|L}N 2 -1 20.969 0 0 1.6476 0 0 1027.532877694257 0 1027.532877694257 0 10 0 0 0 0 0 0 0 {I|L}N 1.6476 - 6 NaN NaN 90313.2 NaN 17232 3951 21178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21187 85.665 NaN 3138400 35 0 493060 0.327 + 26981 SYLPFTEAF 9 96 537.7598978105991 1073.5052426879981 2 537.7614135742188 MULTI HCD FTMS 0 0 0 21186 1706591.625 0.6264931528598849 -4 0.09124755859375 1 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 196.64828556020333 2.142729284121474E-17 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F} 9 0 + 97.189 0 0 9.0535 9.0535 93.857 0 0 0 10.592634077523186 56.54483974549976 10.592634077523186 9.449911167586478 0 3.110924374808178 0 1.6237125054200234 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}PTEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}P{I|L}{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YPTEA{M(Oxidation (M))|F};[HM]PT{M(Oxidation (M))|F}PPT{M(Oxidation (M))|F};[HQ]WRTEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{[ET]|[MV]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[MT]{I|L}EA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{M(Oxidation (M))|F}{I|L}EA{M(Oxidation (M))|F};[HM]PTP{M(Oxidation (M))|F}PT{M(Oxidation (M))|F} 9.0535;8.1732;7.8628;6.7787;6.7193;6.6775;6.0521;6.0243;5.9071;5.839 +;-;-;-;-;-;-;-;-;- + 4840 NaN NaN 557203.7 NaN 17233 3952 21186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21188 85.67 NaN 58046 35 0 7804.6 0.261 + 28917 TWMMLYPQRM 10 35 452.8802966168665 NaN 0 452.8701477050781 PEAK HCD FTMS 0 0 0 21186 20027.998046875 0.7978903981532872 5 -0.10791778564453125 2 Unmodified _TWMMLYPQRM_ REV__ENST00000528501.5_1_11:47834563-47834888:-|nuORF 0.6268255596534771 0.33964781322640114 1 E 1 -1 6.9897 0 0 0.77341 0 0 97.36427868119547 674.321088959259 771.6853676404545 0 0 0 0 0 0 0 0 0 E 0.77341 - 2 + NaN NaN 89323 NaN 17234 3952 21186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21190 85.675 NaN 376670 35 0 58989 0.327 -1 CDCDFAHLF 9 56 564.2161859907247 1126.4178190482494 2 564.2172241210938 MULTI HCD FTMS 0 0 0 21189 138956.59375 0.43549437882021336 -1 0.0096282958984375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))DCDFAHLF_ ENSG00000162494|ENST00000376085|LRRC38 4.75600775471527 0.31496297302216103 1 N{I|L}{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.636 0 0 734.21479888399 0 734.21479888399 0 22.703037561203843 0 0 0 0.5 0 0 0 N{I|L}{M(Oxidation (M))|F} 2.636 - 12 + NaN NaN 137304.3 NaN 17235 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21191 85.679 NaN 338400 35 0 28865 0.261 + 13467 KYPENFFLL 9 64 585.8133314392081 1169.6121099452162 2 585.813232421875 MULTI HCD FTMS 0 0 0 21189 101580.3125 0.3826969825690311 -50 1.1342315673828125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 33.4449034751529 0.0954363425218424 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 48.099 0 0 4.1124 4.1124 84.887 0 0 0 7.754581441822921 34.65543355115918 7.754581441822921 9.208187539523749 0 1.5629529932484498 0 0.3807196863200844 0 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.1124;3.3251 +;- + 97 NaN NaN 142031.6 NaN 17236 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21192 85.683 NaN 160540 35 0 15320 0.264 -1 0 51 436.7746692619769 871.5347855907538 2 436.7747802734375 MULTI HCD FTMS 0 0 0 21189 91126.609375 0.05953077147577524 -7 0.14975738525390625 3 NaN NaN 1 A 1 -1 9.2917 0 0 1.0661 0 0 105.07891111673685 692.4058321588499 797.4847432755868 0 0 0 0 0 0.3807196863200844 0 0 0 A 1.0661 - 10 + NaN NaN 105532.4 NaN 17237 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21193 85.686 NaN 426490 35 0 40611 0.261 -1 MELWCGLSC 9 75 578.237091497182 NaN 0 578.25634765625 PEAK HCD FTMS 0 0 0 21189 15077.080078125 0.47454241596697544 -5 0.1008758544921875 4 2 Carbamidomethyl (C) _MELWC(Carbamidomethyl (C))GLSC(Carbamidomethyl (C))_ ENST00000303407.11_3_9:136896778-136897270:-|nuORF 7.289230182591677 0.2599242500475609 1 GV{M(Oxidation (M))|F}T{I|L} 5 -1 13.404 0 0 1.1611 0 0 164.99479959417005 469.17112146549067 634.1659210596607 0 0 0 0 0 0 0 0.4247425010840047 0 GV{M(Oxidation (M))|F}T{I|L} 1.1611 - 119 + NaN NaN 148300.4 NaN 17238 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21194 85.69 NaN 289150 35 0 57850 0.261 + 19218 NIVNAPNKEL 10 74 556.308216720427 NaN 0 556.3079833984375 PEAK HCD FTMS 0 0 0 21189 45947.87109375 0.3404460955826323 5 -0.11444854736328125 5 Unmodified _NIVNAPNKEL_ REV__ENST00000328747.11_1_7:64865258-64865408:+|nuORF 4.897010918128616 0.3359931263921593 1 VVVG{M(Oxidation (M))|F}E 6 -1 13.441 0 0 1.2102 0 0 220.1329196303738 257.0998934381469 477.2328130685207 0 0 0 0 0 0 0 0.5796896906561032 0 VVVG{M(Oxidation (M))|F}E 1.2102 - 114 + NaN NaN 121825.5 NaN 17239 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21195 85.693 NaN 98536 35 0 12004 0.261 + -1 LYVCGFLLVGC 11 47 622.316817459094 1242.6190819849878 2 622.8184204101562 MULTI HCD FTMS 0 0 0 21189 15831.6640625 0.42078495396746707 1 -0.02661895751953125 6 Carbamidomethyl (C) _LYVC(Carbamidomethyl (C))GFLLVGC_ REV__PVRIG|p.S159C|1|0.15|ENSG00000213413|chr7:100220553-100220553|C/G|missense_variant 15.847184025352803 0.3190053777784024 1 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 52.101 0 0 4.1928 0 0 0 162.09280412397803 162.09280412397803 35.90288749933073 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 4.1928 - 61 NaN NaN 97385 NaN 17240 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21196 85.696 NaN 102600 35 0 31860 0.262 + 31269 VVYMVLILA 9 33 510.8126887237541 1019.6108245143082 2 510.8126220703125 MULTI HCD FTMS 0 0 0 21189 13520.68359375 0.3283451137617431 -8 0.1656341552734375 7 Unmodified _VVYMVLILA_ REV__ENSG00000148136|ENST00000277216|OR13C4;REV__OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant 2.302733041254933 0.33356062215410776 1 A 1 -1 0.088644 0 0 0.0086939 0 0 438.4099710980957 507.1266268365844 945.5365979346801 0 0 0 0 0 0 0 0 0 A 0.0086939 + + 1 + NaN NaN 102070.2 NaN 17241 3953 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21198 85.701 NaN 223700 35 0 63788 0.327 + 16659 LWGPGLPNF 9 44 500.76634176576226 999.5181305983245 2 500.7662353515625 MULTI HCD FTMS 0 0 0 21197 75446.5 0.6901683256674185 -2 0.03624725341796875 1 Unmodified _LWGPGLPNF_ ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-11|PML 44.40701690623563 0.04511410083598184 1 [W{I|L}]G[PG]{I|L}[NP]{M(Oxidation (M))|F} 9 0 + 22.303 0 0 2.2313 2.2313 80.884 0 0 0 3.010840447343387 9.058415520056544 3.010840447343387 4.704999916446795 0 1.774227503252014 0 0 0 + + [W{I|L}]G[PG]{I|L}[NP]{M(Oxidation (M))|F};[W{I|L}][NP]{I|L}[NP]{M(Oxidation (M))|F} 2.2313;1.7606 +;- + 41 NaN NaN 108418.7 NaN 17242 3954 21197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21199 85.706 NaN 143730 35 0 22347 0.261 + 5993 FPDQVQDLVF 10 42 604.3031243520578 1206.5916957709155 2 604.3035888671875 MULTI HCD FTMS 0 0 0 21197 33694.18359375 0.1435880605840065 17 -0.41895294189453125 2 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 4.897010918128616 0.4493830473644964 1 V{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1523 0 0 942.4387105089698 0 942.4387105089698 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.1523 + + 3 NaN NaN 103890.2 NaN 17243 3954 21197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21200 85.709 NaN 72684 35 0 5674.3 0.261 -1 MPDYMILQEL 10 38 634.7986536364031 1267.582754339606 2 634.7982177734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 13.614867670302875 0.3837631382804675 1 {I|L}QE{I|L} 4 -1 40.745 0 0 3.2144 0 0 766.3047962873062 0 766.3047962873062 0 40.74539712336197 0 0 0 0.8807196863200843 0 0 0 {I|L}QE{I|L} 3.2144 + + 12 NaN NaN 94873.5 NaN 17244 3954 21197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21201 85.712 NaN 60887 35 0 6438 0.263 + 7155 FSFLPQSSL 9 36 513.2686543758331 NaN 0 513.7504272460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FSFLPQSSL_ ENSG00000102468|ENST00000542664|HTR2A;nc|ENSG00000102468|P28223-2|HTR2A 3.2813086475875832 0.27934607848455584 1 S 1 8 6.9897 0 0 0.68224 0 0 131.0943023045973 803.3839205377561 934.4782228423535 0 0 0 0 0 0 0 0 0 + S 0.68224 + + 1 + NaN NaN 103537.2 NaN 17245 3954 21197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21203 85.717 NaN 1111600 35 0 151350 0.327 + 13200 KYLVIGDLLF 10 95 590.8522713892568 1179.6899898453134 2 590.8526611328125 MULTI HCD FTMS 0 0 0 21202 554169.3125 0.21336548206395756 7 -0.17952728271484375 1 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 61.60191391372663 0.03559593591905874 1 [Y{I|L}]KV{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 77.67 0 0 6.5839 6.5839 90.203 0 0 0 3.0444970792913324 61.11046901591578 3.0444970792913324 10.779550148593486 0 2.774227503252014 0 0.3252574989159953 0 [Y{I|L}]KV{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VK{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VTS{I|L}PK{I|L}{M(Oxidation (M))|F};[Y{I|L}]VTSPK{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VTS{I|L}P{I|L}K{M(Oxidation (M))|F};[Y{I|L}]KV{I|L}G{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};[Y{I|L}]VTSP{I|L}K{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[DG][YV]K{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VK{I|L}G{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{I|L}{I|L}[DG]{I|L}[YV]K{I|L}{M(Oxidation (M))|F} 6.5839;5.6701;4.844;4.3807;4.0158;3.8699;3.4919;3.2076;2.9562;2.78 -;-;-;-;-;-;-;-;-;- 2709 NaN NaN 252088.6 NaN 17246 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21204 85.722 NaN 772670 35 0 56869 0.261 + 11222 IYLDELQVI 9 119 553.3109462937842 1104.6073396543684 2 553.8301391601562 MULTI HCD FTMS 0 0 0 21202 96816.359375 0.883221365920945 1 -0.02618408203125 2 Unmodified _IYLDELQVI_ ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF 23.789781309258295 0.1548179064208189 1 {I|L}QV{I|L} 4 5 40.79 0 0 3.6927 0 0 633.3017700572092 0 633.3017700572092 0 26.81031895404267 0 0 0 1.1861818737241734 0 0 0 + {I|L}QV{I|L} 3.6927 + + 683 NaN NaN 200906.7 NaN 17247 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21205 85.725 NaN 804020 35 0 92223 0.263 + 30159 VGVPTRAR 8 72 428.26140148605253 854.5082500389051 2 428.2614440917969 MULTI HCD FTMS 0 0 0 21202 620539.375 0.22837120570873387 -5 0.0912628173828125 3 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 8 11.259 0 0 1.3176 0 0 689.4295279703489 0 689.4295279703489 0 -4.2305746461560645 -4.2305746461560645 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3176 - 8 + NaN NaN 201249.8 NaN 17248 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21206 85.729 NaN 659690 35 0 68237 0.261 + -1 FSCCPDDRI 9 94 585.2396694030055 1168.4647858728108 2 585.7416381835938 MULTI HCD FTMS 0 0 0 21202 106092.3828125 0.2229767863396421 -5 0.0912628173828125 4 2 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))C(Carbamidomethyl (C))PDDRI_ REV__ENSG00000267710|ENST00000649256|EDDM13 9.38312468134398 0.279288223203164 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[NP][VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 -1 14.332 0 0 1.2265 0 0 0 126.9240026555125 126.9240026555125 -2.1221253048598463 0 -2.1221253048598463 0 0 0.3494850021680094 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[NP][VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 1.2265 - 85 NaN NaN 177947.7 NaN 17249 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21207 85.732 NaN 236990 35 0 22266 0.261 -1 0 63 582.7998357176308 1163.5851185020615 2 582.8004760742188 MULTI HCD FTMS 0 0 0 21202 123250.140625 0.03620551922033523 21 -0.5337982177734375 5 NaN NaN 1 TSST 4 -1 31.459 0 0 2.7036 0 0 476.26159765610504 308.16144739322505 784.4230450493301 0 0 0 0 0 0.8807196863200843 0 0.8494850021680094 0 TSST 2.7036 - 170 + NaN NaN 121362 NaN 17250 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21208 85.735 NaN 142110 35 0 7668 0.261 + -1 LFIIYSLF 8 61 529.3017306730245 1056.588908412849 2 529.3021240234375 MULTI HCD FTMS 0 0 0 21202 23004.76171875 0.21057362068680704 22 -0.5599517822265625 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFIIYSLF_ REV__ENST00000265138.3_1_5:90678923-90678989:-|nuORF 6.354104778181461 0.5325651638111438 1 Q{I|L} 2 -1 25.969 0 0 2.4578 0 0 797.4368307933713 0 797.4368307933713 0 5.786728014391471 0 0 0 0.5 0 0 0 Q{I|L} 2.4578 - 137 NaN NaN 118719.6 NaN 17251 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21209 85.739 NaN 118790 35 0 9055.3 0.261 + 6398 FPHIDEFFTL 10 43 633.3137981766835 1264.6130434201668 2 633.8154907226562 MULTI HCD FTMS 0 0 0 21202 27936.05078125 0.32501566082311034 -4 0.07843017578125 7 Unmodified _FPHIDEFFTL_ ENSG00000170903|ENST00000301919|MSANTD4 17.11289562659939 0.35104376501799556 1 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L} 6 5 47.128 0 0 3.7267 0 0 462.1751881330094 0 462.1751881330094 0 33.94016261540408 0 0 0 0.5 0 0.4247425010840047 0 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L} 3.7267 - 80 NaN NaN 100894.3 NaN 17252 3955 21202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21211 85.744 NaN 1880700 35 0 326560 0.327 + 29515 TYVTILPEL 9 62 524.7999065637616 1047.5852601943232 2 524.7999877929688 MULTI HCD FTMS 0 0 0 21210 799579.6875 0.980397303348468 2 -0.04555511474609375 1 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 111.28704002717404 0.0027322905094575235 1 [YT]VT{I|L}{I|L}PE{I|L} 9 0 + 97.916 0 0 9.3469 9.3469 95.953 0 0 0 20.87128018967597 76.74533159112684 20.87128018967597 17.028937514676485 0 2.2302046884880937 1.5228787452803376 1.4802046884880937 0 + + [YT]VT{I|L}{I|L}PE{I|L};[YT]VT{I|L}P{I|L}E{I|L};[YT]V{I|L}{I|L}TPE{I|L};[YT]VP{I|L}T{I|L}E{I|L};[TP][YV]{I|L}T{I|L}E{I|L};[TP][{I|L}V]YT{I|L}E{I|L} 9.3469;7.7213;6.1275;4.5957;0.6307;0.58702 +;-;-;-;-;- + 401 NaN NaN 371874.3 NaN 17253 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21212 85.748 NaN 1332900 35 0 133770 0.261 + 20387 NYVGFINYL 9 74 551.7822829470241 1101.550012960848 2 551.7824096679688 MULTI HCD FTMS 0 0 0 21210 512301.5625 1 0 0 2 Unmodified _NYVGFINYL_ ENSG00000092068|ENST00000316902|SLC7A8;ENST00000397310.6_1_14:23596388-23599053:-|nuORF;ENST00000528806.5_1_14:23598711-23607206:-|nuORF;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8 136.33342141710068 0.00022087650154924235 1 [YN]VG{M(Oxidation (M))|F}{I|L}NY{I|L} 9 0 + 110.03 0 0 9.9889 9.9889 93.785 0 0 0 27.614393726401687 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6237125054200234 1.5228787452803376 0 1.872363747448347 + + [YN]VG{M(Oxidation (M))|F}{I|L}NY{I|L};[YN]VG{M(Oxidation (M))|F}{I|L}GGY{I|L};[YN]VG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]VG{M(Oxidation (M))|F}{I|L}{I|L}[YN];{[QV]|[N{I|L}]|[RA]|[KV]}Y[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]} 9.9889;9.153;6.8966;6.8966;0.46556 +;-;-;-;- + 715 NaN NaN 285800.7 NaN 17254 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21213 85.751 NaN 688760 35 0 71419 0.261 -1 0 114 567.3304148038226 1132.646276674445 2 567.33056640625 MULTI HCD FTMS 0 0 0 21210 289227.6875 0.07477601176290904 -30 0.7113189697265625 3 NaN NaN 1 Y{I|L}{I|L}T{M(Oxidation (M))|F} 5 -1 32.982 0 0 2.9119 0 0 477.29161466448255 0 477.29161466448255 0 20.76313416527347 0 0 0 0 0 0.19238776965543153 0 Y{I|L}{I|L}T{M(Oxidation (M))|F} 2.9119 - 1804 + NaN NaN 191137.7 NaN 17255 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21214 85.755 NaN 174230 35 0 15402 0.261 -1 0 71 597.8564781435832 1193.6984033539663 2 597.8562622070312 MULTI HCD FTMS 0 0 0 21210 121409.6796875 0.2050398452148588 -17 0.354461669921875 4 NaN NaN 1 {[QV]|[N{I|L}]|[RA]|[KV]}V 3 -1 7.4473 0 0 0.62388 0 0 0 864.4818255553913 864.4818255553913 3.4678748622465623 0 0 0 0 0 0 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}V 0.62388 - 25 NaN NaN 121872.2 NaN 17256 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21215 85.758 NaN 470170 35 0 19177 0.261 -1 0 99 553.8301034429838 1105.6456539527676 2 554.833251953125 MULTI HCD FTMS 0 0 0 21210 76683.078125 0.1512133506780652 60 -1.4556884765625 5 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]EATVW 9 -1 32.417 0 0 2.932 0 0 0 126.16155462984092 126.16155462984092 7.291193215580954 0 0 0 0 0 1.2218487496163564 1.086696871556164 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]EATVW 2.932 - 1429 NaN NaN 155435.5 NaN 17257 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21216 85.761 NaN 205600 35 0 14273 0.261 -1 0 71 531.8171214443505 1061.619689955501 2 531.8167724609375 MULTI HCD FTMS 0 0 0 21210 142707.203125 0.960837193194189 -2 0.04227447509765625 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4586 0 0 896.5409526281557 0 896.5409526281557 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4586 - 142 + NaN NaN 111843.9 NaN 17258 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21217 85.765 NaN 226810 35 0 34114 0.261 -1 LLQMKLDN 8 57 495.768292902826 989.522032872452 2 495.78070068359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _LLQM(Oxidation (M))KLDN_ ENSG00000040275|ENST00000265295|SPDL1;ENST00000507232.5_1_5:169018105-169028825:+|nuORF;nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1 8.593279151180031 0.5292430274356741 1 E{NN|[MP]|[D{I|L}]|[EV]}N 4 -1 18.43 0 0 1.8625 0 0 500.30150038886876 0 500.30150038886876 0 5.726825097560422 0 0 0 0 0 0.3252574989159953 0.3494850021680094 E{NN|[MP]|[D{I|L}]|[EV]}N 1.8625 - 126 NaN NaN 124144.4 NaN 17259 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21218 85.768 NaN 138360 35 0 11613 0.261 -1 FCSDFKTIW 9 41 602.2773057183576 1202.5400585035152 2 602.7805786132812 MULTI HCD FTMS 0 0 0 21210 27171.169921875 0.5586980279279155 6 -0.15334320068359375 8 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SDFKTIW_ ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}[{I|L}T]W 4 -1 31.198 0 0 2.5943 0 0 637.2482777326187 0 637.2482777326187 0 17.46457760951447 0 0 0 1.3252574989159953 0 0.3252574989159953 0 {M(Oxidation (M))|F}[{I|L}T]W 2.5943 - 19 NaN NaN 98753 NaN 17260 3956 21210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21220 85.773 NaN 812080 35 0 129500 0.327 + 18522 MSVEFEELL 9 94 548.7653854187174 1095.5162179042347 2 548.7523193359375 MULTI HCD FTMS 0 0 0 21219 34662.47265625 0.774468375166057 -1 0.02939605712890625 1 Unmodified _MSVEFEELL_ ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF 52.268347100219714 0.028397529699942435 1 C{I|L}C{M(Oxidation (M))|F}PYG{M(Oxidation (M))|F} 8 8 40.03 0 0 3.6539 0 0 147.10971980264713 0 147.10971980264713 0 7.002735327213401 0 0 0 0 0 0 0 C{I|L}C{M(Oxidation (M))|F}PYG{M(Oxidation (M))|F} 3.6539 - 1454 + NaN NaN 205647 NaN 17261 3957 21219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21221 85.777 NaN 173660 35 0 24082 0.261 + 21094 PNFYSDLIL 9 51 541.2820574911088 1080.5495620490176 2 541.2819213867188 MULTI HCD FTMS 0 0 0 21219 35089.66796875 0.3666570311399217 9 -0.22187042236328125 2 Unmodified _PNFYSDLIL_ REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF 12.240655878213236 0.2545997876781172 1 EV{I|L}{I|L} 4 -1 26.943 0 0 2.4935 0 0 608.2587147443375 0 608.2587147443375 0 10.489634511125061 0 0 0 0.8807196863200843 0 0 0 EV{I|L}{I|L} 2.4935 - 28 NaN NaN 116674.5 NaN 17262 3957 21219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21222 85.781 NaN 118100 35 0 12743 0.261 + 6921 FPVGVFVVA 9 42 467.7733790169003 933.5322051006007 2 467.77337646484375 MULTI HCD FTMS 0 0 0 21219 59549.3046875 1 0 0 3 Unmodified _FPVGVFVVA_ ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-6|AIG1 14.581692164780916 0.23437375358055648 1 VA 2 7 24.222 0 0 2.5946 0 0 745.416802157008 0 745.416802157008 0 11.034087492996392 0 0 0 0.3252574989159953 0 0 0 + VA 2.5946 + + 35 NaN NaN 103973 NaN 17263 3957 21219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21223 85.784 NaN 237140 35 0 23666 0.261 + -1 ITMEDEPYFS 10 56 624.2588049654054 1246.5030569976107 2 624.7617797851562 MULTI HCD FTMS 0 0 0 21219 58512.55078125 0.5451684509800482 -6 0.13401031494140625 4 Oxidation (M) _ITM(Oxidation (M))EDEPYFS_ REV__nc|ENSG00000197822|Q16625-7|OCLN 18.1463463914782 0.3413772152514074 1 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 6 -1 59.786 0 0 4.7963 0 0 484.1454029767594 0 484.1454029767594 0 39.340905095085205 0 0 0 2.2134679910804405 0 0 0 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 4.7963 - 178 NaN NaN 113968.2 NaN 17264 3957 21219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21225 85.789 NaN 9751300 35 0 2823700 0.327 + 1325 AYPEYLITF 9 77 558.784318404542 1115.5540838758839 2 558.7848510742188 MULTI HCD FTMS 0 0 0 21224 7146409 0.6891885467006529 -2 0.04555511474609375 1 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 141.82661023413823 1.746659319327287E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEY{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 85.838 0 0 7.6946 7.6946 92.286 0 0 0 4.086258831369278 46.44016261540408 4.086258831369278 11.148933515261632 0 2.973197507588033 1.3979400086720375 1.024227503252014 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEY{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEY{I|L}[{M(Oxidation (M))|F}T]{I|L};[{I|L}T][YE][{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{I|L}T][YE][{I|L}P]AY{M(Oxidation (M))|F};[EP]YAY{I|L}[{M(Oxidation (M))|F}T]{I|L};[{I|L}T]{M(Oxidation (M))|F}{[ET]|[MV]}[VP]Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L};[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7.6946;6.6952;5.8429;4.5978;4.0785;3.6926;3.5983;3.1588;2.746;2.1701 +;-;-;-;-;-;-;-;-;- + 774 NaN NaN 703021.1 NaN 17265 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21226 85.794 NaN 3572900 35 0 626230 0.261 + 26982 SYLPFTEAF 9 104 537.7598978105991 1073.5052426879981 2 537.7611694335938 MULTI HCD FTMS 0 0 0 21224 2159307 0.7926858602874133 2 -0.04885101318359375 2 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 196.64828556020333 2.142729284121474E-17 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F} 9 0 + 101.44 0 0 9.4491 9.4491 94.944 0 0 0 14.093020841151613 64.4537812595911 14.093020841151613 12.18765315847925 0 3.1549471895720984 0 2.004432191740108 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}P{I|L}{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PET{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};[HM]PT{M(Oxidation (M))|F}PPT{M(Oxidation (M))|F};[HQ]WRTEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}P{I|L}ET{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[MT]{I|L}EA{M(Oxidation (M))|F};[HM]PT{M(Oxidation (M))|F}P{I|L}[MT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TEA{M(Oxidation (M))|F} 9.4491;8.3138;7.2831;6.9481;6.8506;6.3878;6.1478;6.0468;5.9968;5.9559 +;-;-;-;-;-;-;-;-;- + 5457 NaN NaN 618804.4 NaN 17266 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21227 85.797 NaN 818960 35 0 28889 0.261 -1 0 107 545.3168208601961 1088.6190887871921 2 545.3170776367188 MULTI HCD FTMS 0 0 0 21224 929461.375 0.25781931274497927 44 -1.12078857421875 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2841 0 0 923.5403667186359 0 923.5403667186359 0 0.49172793083826605 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2841 - 75 + NaN NaN 217768.2 NaN 17267 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21228 85.8 NaN 167800 35 0 17528 0.261 -1 FPSDLDLDMF 10 44 608.2656513472831 1214.516749761366 2 608.2662353515625 MULTI HCD FTMS 0 0 0 21224 82909.1484375 0.6417077949170683 10 -0.254638671875 4 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 27.628801355627647 0.2527626205058048 1 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 54.949 0 0 4.5243 0 0 559.2656984804645 0 559.2656984804645 0 49.463950151760656 0 0 0 1.4247425010840047 0 0.4247425010840047 0 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5243 + + 32 NaN NaN 100446.3 NaN 17268 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21229 85.804 NaN 326400 35 0 60090 0.263 + 31639 VYISSLALL 9 57 489.7972367425237 977.5799205518474 2 489.7970886230469 MULTI HCD FTMS 0 0 0 21224 93636.5234375 0.08538193655683235 -5 0.11444854736328125 5 Unmodified _VYISSLALL_ ENSG00000115233|ENST00000409682|PSMD14 131.29775728308752 0.0005262696486345744 1 [YV]{I|L}SS{I|L}A{I|L}{I|L} 9 0 + 98.387 0 0 10.064 10.064 97.828 0 0 0 20.87128018967597 82.18941891701682 20.87128018967597 31.11500205754315 0 2.6237125054200234 1.5228787452803376 1.610924374808178 0 + + [YV]{I|L}SS{I|L}A{I|L}{I|L};[YV]{I|L}SVTA{I|L}{I|L} 10.064;6.8815 +;- + 346 NaN NaN 135508.5 NaN 17269 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21230 85.807 NaN 243610 35 0 39462 0.261 + 18394 MPQPDFSFL 9 67 541.2549651579343 1080.4953773826685 2 541.2547607421875 MULTI HCD FTMS 0 0 0 21224 58091.11328125 0.6952393948973508 -1 0.0161590576171875 6 Unmodified _MPQPDFSFL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 31.26834338654808 0.10542797264966089 1 {M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 4 5 44.179 0 0 4.0887 0 0 568.2280140607437 0 568.2280140607437 0 32.38392105232865 0 0 0 1.3494850021680094 0 0.7742275032520141 0 + {M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 4.0887 + + 79 NaN NaN 127086.4 NaN 17270 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21231 85.81 NaN 202600 35 0 29496 0.261 + 23107 RETLKKQA 8 54 487.2931275951302 972.5717022570605 2 487.2931823730469 MULTI HCD FTMS 0 0 0 21224 81459.5390625 0.3949050204360323 10 -0.254638671875 7 Unmodified _RETLKKQA_ REV__tr|U7SYS6|U7SYS6_FUSNUtRNA(guanine-N(1)-)-methyltransferaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00919PE=4SV=1 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F}H 2 -1 10.217 0 0 1.0505 0 0 130.11804122366044 555.2998751275999 685.4179163512604 0 0 0 0 0 0.2742275032520141 0 0 0 {M(Oxidation (M))|F}H 1.0505 - 19 + NaN NaN 110314 NaN 17271 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21232 85.814 NaN 166340 35 0 32675 0.261 + -1 MTGNKDMSKLI 11 37 627.315481593228 1252.616410253256 2 627.3154907226562 MULTI HCD FTMS 0 0 0 21224 41898.73828125 0.4909428424150699 4 -0.1077880859375 8 Oxidation (M) _M(Oxidation (M))TGNKDMSKLI_ REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7|SLC25A25 4.189502756095605 0.4005469306127019 1 V{I|L} 2 -1 20.969 0 0 1.674 0 0 1022.4496426530584 0 1022.4496426530584 0 15.484550065040281 0 0 0 0 0 0 0 V{I|L} 1.674 - 2 NaN NaN 107895.5 NaN 17272 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21233 85.817 NaN 438500 35 0 44289 0.261 -1 PNMVDCVYSF 10 58 624.2588049654054 1246.5030569976107 2 624.7611694335938 MULTI HCD FTMS 0 0 0 21224 23894.724609375 0.22263001403900715 -5 0.11444854736328125 9 Carbamidomethyl (C),Oxidation (M) _PNM(Oxidation (M))VDC(Carbamidomethyl (C))VYSF_ HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 15.248480904072842 0.3684828712757339 1 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 6 -1 57.273 0 0 4.5947 0 0 484.1440573587933 0 484.1440573587933 0 36.82741751536844 0 0 0 2.138210492164445 0 0 0 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 4.5947 - 343 NaN NaN 141321.8 NaN 17273 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21234 85.82 NaN 165990 35 0 5995.8 0.262 + 22020 QFSWNNFL 8 67 528.2528916219454 1054.4912303106908 2 528.7562866210938 MULTI HCD FTMS 0 0 0 21224 27491.744140625 0.5897486572694733 1 -0.03607940673828125 10 Unmodified _QFSWNNFL_ ENSG00000101846|ENST00000674429|STS;nc|ENSG00000101846|P08842|STS 5.230669730166228 0.5342319408533849 1 N{I|L}{M(Oxidation (M))|F} 3 6 17.747 0 0 1.683 0 0 662.2854025292439 0 662.2854025292439 0 8.282957030980715 0 0 0 0 0 0 0 N{I|L}{M(Oxidation (M))|F} 1.683 - 142 + NaN NaN 104131.8 NaN 17274 3958 21224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21236 85.825 NaN 393280 35 0 45119 0.327 -1 MDSWCQPGF 9 79 564.2161859907247 1126.4178190482494 2 564.2169189453125 MULTI HCD FTMS 0 0 0 21235 144441.390625 0.45268390645306933 5 -0.11736297607421875 1 Carbamidomethyl (C) _MDSWC(Carbamidomethyl (C))QPGF_ ENSG00000187609|ENST00000340951|EXD3;nc|ENSG00000187609|Q8N9H8-4|EXD3 6.723162845929126 0.3000504726104499 1 G{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.1718 0 0 904.317582087115 0 904.317582087115 0 20.48455006504028 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 2.1718 + + 23 + NaN NaN 143245.2 NaN 17275 3959 21235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21237 85.83 NaN 182070 35 0 35495 0.261 + -1 MTGNKDMSKLI 11 49 627.315481593228 1252.616410253256 2 627.3172607421875 MULTI HCD FTMS 0 0 0 21235 31352.869140625 0.3673730361626286 5 -0.11736297607421875 2 Oxidation (M) _M(Oxidation (M))TGNKDMSKLI_ REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7|SLC25A25 4.189502756095605 0.4005469306127019 1 V{I|L} 2 -1 20.969 0 0 1.674 0 0 1022.4531169515487 0 1022.4531169515487 0 15.484550065040281 0 0 0 0 0 0 0 V{I|L} 1.674 - 3 NaN NaN 113833.6 NaN 17276 3959 21235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21238 85.833 NaN 401100 35 0 49127 0.261 + -1 ELQTACEYFS 10 57 624.2664180869879 NaN 0 624.2590942382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _ELQTAC(Carbamidomethyl (C))EYFS_ REV__OR8J1|p.G102Efs*11|1|0.29|ENSG00000172487|chr11:56360549-56360549|G/-|frameshift_variant 21.536976647645854 0.26818477760186155 1 {I|L}{M(Oxidation (M))|F}SY 4 -1 32.493 0 0 2.6067 0 0 484.1572125394069 249.08799158267814 733.245204122085 0 0 0 0 0 1.8807196863200843 0 0.3252574989159953 0 {I|L}{M(Oxidation (M))|F}SY 2.6067 - 156 + NaN NaN 144899.6 NaN 17277 3959 21235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21240 85.838 NaN 1176300 35 0 113170 0.327 -1 0 85 436.7746692619769 871.5347855907538 2 436.77484130859375 MULTI HCD FTMS 0 0 0 21239 1530748 1 0 0 1 NaN NaN 1 P 1 -1 8.8515 0 0 1.0156 0 0 651.4038937223929 120.05064569644765 771.4545394188406 0 0 0 0 0 0.4247425010840047 0 0 0 P 1.0156 - 29 + NaN NaN 280659.4 NaN 17278 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21241 85.842 NaN 1294200 35 0 167130 0.261 -1 MELWCGLSC 9 96 578.237091497182 NaN 0 578.2567749023438 PEAK HCD FTMS 0 0 0 21239 26468.251953125 0.8330729931243136 1 -0.0260772705078125 2 2 Carbamidomethyl (C) _MELWC(Carbamidomethyl (C))GLSC(Carbamidomethyl (C))_ ENST00000303407.11_3_9:136896778-136897270:-|nuORF 10.823927491677226 0.2427956001690155 1 {M(Oxidation (M))|F}S 2 -1 10.261 0 0 0.8888 0 0 148.0274757625761 769.3071181630943 917.3345939256703 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}S 0.8888 - 351 + NaN NaN 288445 NaN 17279 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21242 85.846 NaN 441340 35 0 133030 0.261 + 34159 YPDEIEYIF 9 50 594.7768256128962 1187.5390982925924 2 594.7767333984375 MULTI HCD FTMS 0 0 0 21239 201097.9375 0.23899743351441546 -3 0.06501007080078125 3 Unmodified _YPDEIEYIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 20.453626601364224 0.18364154288633264 1 EY{I|L}{M(Oxidation (M))|F} 4 5 44.68 0 0 3.7624 0 0 617.2686634748062 0 617.2686634748062 0 34.22290038707452 0 0 0 1.4247425010840047 0 0 0 + EY{I|L}{M(Oxidation (M))|F} 3.7624 + + 72 NaN NaN 156254.7 NaN 17280 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21243 85.849 NaN 289440 35 0 56082 0.261 + 7247 FSWVDSATTF 10 58 580.7661901109468 1159.5178272886935 2 580.766845703125 MULTI HCD FTMS 0 0 0 21239 145957.953125 1 0 0 4 Unmodified _FSWVDSATTF_ REV__ENSG00000146904|ENST00000275815|EPHA1;REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF 9.38312468134398 0.42334543440173333 1 {I|L}[{M(Oxidation (M))|F}T] 3 -1 12.205 0 0 1.0526 0 0 780.3071472123248 0 780.3071472123248 0 2.5122623118827647 0 0 0 0.3252574989159953 0 0 0 {I|L}[{M(Oxidation (M))|F}T] 1.0526 - 75 + NaN NaN 130004.3 NaN 17281 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21244 85.853 NaN 251360 35 0 48517 0.262 + 35170 YVIPQPHF 8 47 500.76634176576226 999.5181305983245 2 500.7662658691406 MULTI HCD FTMS 0 0 0 21239 39967.07421875 0.3656101833137406 4 -0.10459136962890625 5 Unmodified _YVIPQPHF_ ENSG00000137812|ENST00000399668|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;nc|ENSG00000137812|Q8NG31|KNL1 22.4526382665184 0.4285952353914651 1 NP{M(Oxidation (M))|F} 3 6 34.693 0 0 3.4709 0 0 623.3441852459451 0 623.3441852459451 0 13.723637474483468 0 0 0 0.8494850021680094 0 0 0 NP{M(Oxidation (M))|F} 3.4709 - 30 + NaN NaN 120129.7 NaN 17282 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21245 85.856 NaN 98980 35 0 16749 0.261 + -1 SDMCNGML 8 38 472.1697150977932 942.3248772623864 2 472.1699523925781 MULTI HCD FTMS 0 0 0 21239 13386.4931640625 0.1617141407360491 3 -0.08509063720703125 6 Carbamidomethyl (C),Oxidation (M) _SDM(Oxidation (M))C(Carbamidomethyl (C))NGML_ REV__ENST00000439062.5_2_3:190231855-190268205:+|nuORF 0.7936320650641473 0.540814922690045 1 R 1 -1 2.2185 0 0 0.23543 0 0 601.0683292660958 182.1267031305297 783.1950323966255 0 0 0 0 0 0 0 0 0 R 0.23543 - 7 + NaN NaN 100769.5 NaN 17283 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21246 85.859 NaN 131430 35 0 28726 0.261 + 25288 SAWENGDPFCF 11 58 636.7528894895414 NaN 0 636.7532348632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SAWENGDPFCF_ REV__ENSG00000162777|ENST00000357640|DENND2D;REV__ENST00000473682.5_1_1:111740397-111743081:-|nuORF;REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D 9.5439744041441 0.3150466366044383 1 {I|L}NWE 4 -1 19.553 0 0 1.5378 0 0 131.9297940287509 594.2899263971311 726.2197204258821 0 0 0 0 0 0 0 0 0 {I|L}NWE 1.5378 - 37 + NaN NaN 99968 NaN 17284 3960 21239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21248 85.864 NaN 1791800 35 0 205060 0.327 + 30160 VGVPTRAR 8 82 428.26140148605253 854.5082500389051 2 428.2615661621094 MULTI HCD FTMS 0 0 0 21247 2481897.75 0.9133892295122993 1 -0.03285980224609375 1 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 5.230669730166228 0.5342319408533849 1 P 1 7 8.8515 0 0 1.0359 0 0 634.377297135388 120.05050073795155 754.4277978733395 0 0 0 0 0 0.4247425010840047 0 0 0 + P 1.0359 + + 17 + NaN NaN 352509.9 NaN 17285 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21249 85.868 NaN 1221500 35 0 146610 0.261 + -1 SFCHCITSSA 10 97 585.2396694030055 1168.4647858728108 2 585.239990234375 MULTI HCD FTMS 0 0 0 21247 616052 0.8310391192808071 -2 0.038848876953125 2 2 Carbamidomethyl (C) _SFC(Carbamidomethyl (C))HC(Carbamidomethyl (C))ITSSA_ REV__ENST00000011653.8_1_12:6928491-6928674:+|nuORF 9.38312468134398 0.42334543440173333 1 {I|L}R 2 -1 16.198 0 0 1.3863 0 0 881.2791439404307 0 881.2791439404307 0 0.49681237692304947 0 0 0 0 0 0 0 {I|L}R 1.3863 - 156 NaN NaN 271780.2 NaN 17286 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21250 85.872 NaN 455730 35 0 28045 0.261 -1 0 95 589.3430503555608 1176.6715477779214 2 589.3431396484375 MULTI HCD FTMS 0 0 0 21247 298029.46875 0.2174397874918639 -16 0.355010986328125 3 NaN NaN 1 {I|L}{[HG]|PP}N 4 -1 7.703 0 0 0.65465 0 0 737.4085560529312 0 737.4085560529312 0 0.22878745280337487 0 0 0 0 0 0 0 {I|L}{[HG]|PP}N 0.65465 - 52 NaN NaN 156219.9 NaN 17287 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21251 85.875 NaN 193180 35 0 16856 0.264 + 14257 LCKEKVAS 8 59 439.245368000763 NaN 0 439.25262451171875 PEAK HCD FTMS 0 0 0 21247 9601.5166015625 0.516829906217422 -1 0.0260772705078125 4 Unmodified _LCKEKVAS_ ENSG00000168032|ENST00000301825|ENTPD3;nc|ENSG00000168032|O75355-2|ENTPD3 4.75600775471527 0.38822285293237185 1 QN 2 8 6.2198 0 0 0.70964 0 0 370.2051525870157 261.13446985416255 631.3396224411782 0 0 0 0 0 0.4247425010840047 0 0 0 QN 0.70964 - 6 + NaN NaN 106628.7 NaN 17288 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21252 85.879 NaN 402710 35 0 24497 0.261 + 13201 KYLVIGDLLF 10 73 590.8522713892568 1179.6899898453134 2 590.852294921875 MULTI HCD FTMS 0 0 0 21247 172452.1875 0.06639729643802948 13 -0.3282012939453125 5 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 27.223235318498237 0.2564750587861972 1 V{I|L}[DG]{I|L}{I|L}{M(Oxidation (M))|F} 7 3 31.279 0 0 2.6515 0 0 404.2427235334 0 404.2427235334 0 11.343888618940383 0 0 0 1.5484550065040281 0 0 0 + V{I|L}[DG]{I|L}{I|L}{M(Oxidation (M))|F} 2.6515 + + 276 NaN NaN 146744.7 NaN 17289 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21253 85.882 NaN 661420 35 0 81393 0.261 + 7272 FTEFVVCMII 10 67 601.3032067421717 1200.5918605511433 2 601.3040771484375 MULTI HCD FTMS 0 0 0 21247 136415.96875 0.017574794607359796 -8 0.1893768310546875 6 Unmodified _FTEFVVCMII_ REV__ENST00000553333.1_3_14:54950713-54955331:-|nuORF 25.399314129420986 0.2735354021946395 1 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 53.918 0 0 4.491 4.491 84.409 0 0 0 10.767287836710722 10.767287836710722 10.767287836710722 8.794934551318079 0 1.805462187404089 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}{[WT]|[RM]}[{M(Oxidation (M))|F}E]M{I|L};[YV]{I|L}EE{[CA]|SS}YV{I|L};[YV][{M(Oxidation (M))|F}E]{[WT]|[RM]}M{I|L}{I|L};{M(Oxidation (M))|F}D{I|L}[{M(Oxidation (M))|F}T]{[DS]|[MA]|[CV]|TT}M{I|L}{I|L};{M(Oxidation (M))|F}D{I|L}[{M(Oxidation (M))|F}T]{[DS]|[MA]|[CV]|TT}{I|L}M{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E[HN]{[DS]|[MA]|[CV]|TT}{I|L}M{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E[HN]{[DS]|[MA]|[CV]|TT}M{I|L}{I|L} 4.491;3.7584;3.5941;3.0072;2.3816;2.0762;1.3484;0.82087 -;-;-;-;-;-;-;- 277 NaN NaN 174330.4 NaN 17290 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21254 85.885 NaN 278900 35 0 69004 0.263 + 31702 VYLALLPPD 9 46 500.7885191112196 999.5624852892392 2 500.7894287109375 MULTI HCD FTMS 0 0 0 21247 82712.0703125 0.5270834646418814 -3 0.07492828369140625 7 Unmodified _VYLALLPPD_ ENSG00000159228|ENST00000290349|CBR1;ENSG00000159231|ENST00000290354|CBR3;ENST00000530908.5_1_21:37444388-37445177:+|nuORF 16.942295170755138 0.21397866736869717 1 VY{I|L}S 4 6 59.412 0 0 5.9438 0 0 0 534.2925509088499 534.2925509088499 34.94850021680094 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 VY{I|L}S 5.9438 - 94 + NaN NaN 135064.1 NaN 17291 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21255 85.889 NaN 143600 35 0 13060 0.261 + 277 AFLSSDFLL 9 54 506.7714080186058 1011.5282631040117 2 506.77093505859375 MULTI HCD FTMS 0 0 0 21247 47073.20703125 0.5178922711071959 -2 0.038848876953125 8 Unmodified _AFLSSDFLL_ ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL 12.531546534597751 0.2520865569484384 1 {I|L}{I|L} 2 7 25.969 0 0 2.5673 0 0 767.3495848602643 0 767.3495848602643 0 24.3753063169585 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.5673 + + 8 NaN NaN 114520.7 NaN 17292 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21256 85.892 NaN 74463 35 0 7624.8 0.261 + 7915 GAGHYYQI 8 44 454.7170342927507 907.4195156523015 2 454.71685791015625 MULTI HCD FTMS 0 0 0 21247 44157.76171875 0.7614213844179478 -2 0.038848876953125 9 Unmodified _GAGHYYQI_ REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93830.5 NaN 17293 3961 21247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21258 85.897 NaN 1177000 35 0 97577 0.327 -1 0 129 567.3304148038226 1132.646276674445 2 567.330322265625 MULTI HCD FTMS 0 0 0 21257 883898.25 0.22852025859113065 -24 0.5206527709960938 1 NaN NaN 1 C(Carbamidomethyl (C))[WQ]{I|L}{I|L}T{M(Oxidation (M))|F} 7 -1 33.242 0 0 2.9349 0 0 166.14208227750152 0 166.14208227750152 0 9.34266938503399 0 0 0 0.4247425010840047 0 0.42583370243461727 0 C(Carbamidomethyl (C))[WQ]{I|L}{I|L}T{M(Oxidation (M))|F} 2.9349 - 2225 + NaN NaN 272855.3 NaN 17294 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21259 85.901 NaN 1166300 35 0 156640 0.261 + 29516 TYVTILPEL 9 83 524.7999065637616 1047.5852601943232 2 524.800048828125 MULTI HCD FTMS 0 0 0 21257 262555.78125 0.32193036409025866 8 -0.19391632080078125 2 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 88.95385435242217 0.004553379958619559 1 [YT]VT{I|L}{I|L}PE{I|L} 9 0 + 84.865 0 0 8.101 8.101 95.546 0 0 0 22.376430167995878 73.77646255274416 22.376430167995878 31.020599913279625 0 2.16944517631652 1.5228787452803376 1.110924374808178 0 + + [YT]VT{I|L}{I|L}PE{I|L};[Y{I|L}]ST{I|L}{I|L}PE{I|L};[YT]V{I|L}{I|L}TPE{I|L};[Y{I|L}]S{I|L}{I|L}TPE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS]{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 8.101;5.1399;5.115;2.1539;0.35973 +;-;-;-;- + 735 NaN NaN 272531.7 NaN 17295 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21260 85.905 NaN 359540 35 0 20133 0.261 -1 0 93 553.8301034429838 1105.6456539527676 2 553.83056640625 MULTI HCD FTMS 0 0 0 21257 244208.3125 0.11857629650931059 63 -1.554412841796875 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3209 0 0 940.5666114496411 0 940.5666114496411 0 6.35533386143269 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3209 - 200 + NaN NaN 145977.5 NaN 17296 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21261 85.908 NaN 696800 35 0 121590 0.261 + 6784 FPQYVMDVL 9 73 556.278238400494 1110.541923867788 2 556.2792358398438 MULTI HCD FTMS 0 0 0 21257 290667.0625 0.3696876615162187 -5 0.1239471435546875 4 Unmodified _FPQYVMDVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 45.69961567697781 0.039180348357221985 1 {I|L}EQVMDV{I|L} 8 3 68.759 0 0 6.1915 0 0 165.04579360175939 0 165.04579360175939 0 33.87714364165882 0 0 0 1.805462187404089 0 0.6203715150305281 0 {I|L}EQVMDV{I|L} 6.1915 - 695 NaN NaN 202116.6 NaN 17297 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21262 85.912 NaN 211750 35 0 19145 0.261 -1 0 81 597.8564781435832 1193.6984033539663 2 597.8563232421875 MULTI HCD FTMS 0 0 0 21257 151395.296875 0.2556803404589132 -11 0.25795745849609375 5 NaN NaN 1 S 1 -1 4.8464 0 0 0.406 0 0 105.0766999948665 998.5620821588499 1103.6387821537164 0 0 0 0 0 0 0 0.3252574989159953 0 S 0.406 - 13 + NaN NaN 127643 NaN 17298 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21263 85.915 NaN 251390 35 0 51415 0.261 + 6706 FPPLYEDIM 9 55 562.7723637691408 1123.5301746050816 2 562.7719116210938 MULTI HCD FTMS 0 0 0 21257 47535.48046875 0.4160345792154658 8 -0.19391632080078125 6 Unmodified _FPPLYEDIM_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 20.453626601364224 0.18364154288633264 1 [YN][QT][Q{I|L}]VQM 9 8 + 42.113 0 0 3.7483 3.7483 80.05 0 0 0 6.783343794609138 23.69666231504993 6.783343794609138 1.020599913279625 0 0.5 2 0 0 [YN][QT][Q{I|L}]VQM;[YN][QT][Q{I|L}]N{I|L}M;[YN][QT][Q{I|L}]NM{I|L} 3.7483;3.6574;3.3895 -;-;- 66 NaN NaN 115278.9 NaN 17299 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21264 85.918 NaN 157740 35 0 12973 0.261 + 31324 VWSIWMTETL 10 58 633.3137981766835 1264.6130434201668 2 633.3140869140625 MULTI HCD FTMS 0 0 0 21257 36135.7421875 0.35226027280936434 4 -0.09792327880859375 7 Unmodified _VWSIWMTETL_ TP53|p.C176Afs*71|1|0.09|ENSG00000141510|chr17:7675086-7675086|A/-|frameshift_variant;TP53|p.D184Afs*62|1|0.68|ENSG00000141510|chr17:7675058-7675061|CTAT/-|frameshift_variant;TP53|p.G199Efs*48|1|0.77|ENSG00000141510|chr17:7674937-7674937|T/-|frameshift_variant;TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant;TP53|p.H178Tfs*69|1|0.53|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.I195Lfs*53|1|0.3|ENSG00000141510|chr17:7674949-7674950|-/AG|frameshift_variant;TP53|p.N200Ifs*47|1|0.17|ENSG00000141510|chr17:7674932-7674932|T/-|frameshift_variant;TP53|p.P191Qfs*51|1|0.69|ENSG00000141510|chr17:7674944-7674959|CGGATAAGATGCTGAG/-|frameshift_variant;TP53|p.V173Afs*72|1|0.09|ENSG00000141510|chr17:7675088-7675094|CGCCTCA/-|frameshift_variant 13.90604991867851 0.3810395177745597 1 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L} 6 6 50.394 0 0 3.9849 0 0 462.1756764142594 0 462.1756764142594 0 41.212600430434705 0 0 0 0.5 0 0.4247425010840047 0 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L} 3.9849 - 166 NaN NaN 114812.8 NaN 17300 3962 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21266 85.923 NaN 535920 35 0 28820 0.327 -1 0 107 575.8429950900887 1149.6714372469773 2 575.8427734375 MULTI HCD FTMS 0 0 0 21265 620320.625 0.33556460871278626 -26 0.5728988647460938 1 NaN NaN 1 D 1 -1 8.8958 0 0 0.77377 0 0 61.05169440275433 970.5462698618676 1031.5979642646219 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.77377 - 213 + NaN NaN 167189.6 NaN 17301 3963 21265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21267 85.927 NaN 433330 35 0 103970 0.261 + 28210 TLCDSIILI 9 59 495.780437370278 989.546321807356 2 495.7806091308594 MULTI HCD FTMS 0 0 0 21265 291841.4375 1 0 0 2 Unmodified _TLCDSIILI_ tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1 36.04419817259434 0.08350412372117409 1 VG{I|L}{I|L}{I|L} 5 6 43.989 0 0 4.4454 0 0 476.2044850080094 0 476.2044850080094 0 32.39008354264301 0 0 0 1.4247425010840047 0 0 0 VG{I|L}{I|L}{I|L} 4.4454 - 161 NaN NaN 163362 NaN 17302 3963 21265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21268 85.931 NaN 188430 35 0 42676 0.261 + 28195 TKRQTKSLT 9 69 531.8171214443505 1061.619689955501 2 531.8173217773438 MULTI HCD FTMS 0 0 0 21265 140024.1875 0.9427726446222218 5 -0.120697021484375 3 Unmodified _TKRQTKSLT_ REV__ENSG00000107937|ENST00000360803|GTPBP4 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4586 0 0 896.5409373693666 0 896.5409373693666 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4586 - 152 + NaN NaN 130094 NaN 17303 3963 21265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21269 85.934 NaN 147200 35 0 28206 0.263 + 25622 SGIITAFV 8 46 404.2331499874547 NaN 0 404.23309326171875 PEAK HCD FTMS 0 0 0 21265 35931.3125 0.9643970322070766 4 -0.0912322998046875 4 Unmodified _SGIITAFV_ ENST00000583447.5_1_17:37219733-37228839:+|nuORF 2.302733041254933 0.38822285293237185 1 R 1 8 3.0989 0 0 0.38427 0 0 264.1542749731531 383.16999231510005 647.3242672882532 0 0 0 0 0 0 0 0 0 R 0.38427 - 5 + NaN NaN 104067.9 NaN 17304 3963 21265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21270 85.938 NaN 53131 35 0 4185.3 0.261 -1 0 29 484.2947707716326 483.2874943050326 1 484.2953186035156 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 83403.8 NaN 17305 3963 21265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21272 85.943 NaN 8986200 35 0 2642000 0.327 + 1326 AYPEYLITF 9 55 558.784318404542 1115.5540838758839 2 558.7848510742188 MULTI HCD FTMS 0 0 0 21271 6150250.5 0.5931205734152585 4 -0.1011962890625 1 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 120.45040980043947 0.0012363446172167195 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 80.155 0 0 7.1853 7.1853 89.091 0 0 0 8.379231027444405 43.16061246681059 8.379231027444405 8.719005324262241 0 2.7302046884880937 1.3010299956639813 0.6989700043360187 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}T{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}T{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}T{I|L}{M(Oxidation (M))|F};[{I|L}T][YE][{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[EP]Y{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F} 7.1853;6.4037;6.0395;5.5514;5.2579;4.4056;3.9842;2.3457;1.7889 +;-;-;-;-;-;-;-;- + 424 NaN NaN 504047.2 NaN 17306 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21273 85.947 NaN 1157600 35 0 215890 0.261 + 31640 VYISSLALL 9 67 489.7972367425237 977.5799205518474 2 489.79730224609375 MULTI HCD FTMS 0 0 0 21271 956242.5 0.8719443382842303 1 -0.03607940673828125 2 Unmodified _VYISSLALL_ ENSG00000115233|ENST00000409682|PSMD14 179.2298980043202 1.129651853483471E-12 1 [YV]{I|L}SS{I|L}A{I|L}{I|L} 9 0 + 111.63 0 0 11.419 11.419 96.297 0 0 0 17.347594070116017 16.478174818886373 16.478174818886373 13.57840941039747 0 2.8807196863200843 1.5228787452803376 1.8996498648046138 0 + + [YV]{I|L}SS{I|L}A{I|L}{I|L};[YV]{I|L}STVA{I|L}{I|L};[{I|L}A]{I|L}S{I|L}S[YV]{I|L};[{I|L}A]{I|L}S{I|L}S{I|L}[YV] 11.419;10.03;3.6925;2.543 +;-;-;- + 440 NaN NaN 260066.7 NaN 17307 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21274 85.951 NaN 599470 35 0 18266 0.261 -1 0 89 545.3168208601961 1088.6190887871921 2 545.317138671875 MULTI HCD FTMS 0 0 0 21271 534214.1875 0.1481833870502338 50 -1.2111282348632812 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2841 0 0 923.5401988719562 0 923.5401988719562 0 2.18710175402183 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2841 - 329 + NaN NaN 192120.6 NaN 17308 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21275 85.954 NaN 815830 35 0 102190 0.261 + 26983 SYLPFTEAF 9 83 537.7598978105991 1073.5052426879981 2 537.7611083984375 MULTI HCD FTMS 0 0 0 21271 378832.875 0.13907029589795666 8 -0.1905517578125 4 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 164.5152109175784 6.8106583686994766E-09 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F} 9 0 + 90.101 0 0 8.3932 8.3932 92.982 0 0 0 8.03901102397704 63.68447907184631 8.03901102397704 9.688105454342804 0 3.048455006504028 0 1.2783773187068794 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};[YV]TP{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}P{I|L}{M(Oxidation (M))|F}TEA{M(Oxidation (M))|F};MHPT{M(Oxidation (M))|F}PTP{M(Oxidation (M))|F};MHPT{M(Oxidation (M))|F}PPT{M(Oxidation (M))|F};MHPT{M(Oxidation (M))|F}P{I|L}[MT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{[ET]|[MV]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[HQ]WRTEA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[NV]|[RG]}N{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8.3932;7.4907;7.053;6.8111;6.7094;5.7815;5.6532;5.3598;4.8871;4.7575 +;-;-;-;-;-;-;-;-;- + 2463 NaN NaN 230197.6 NaN 17309 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21276 85.957 NaN 255770 35 0 25016 0.261 + 34905 YSIDRNTDL 9 68 548.7653854187174 1095.5162179042347 2 548.752197265625 MULTI HCD FTMS 0 0 0 21271 11139.5849609375 0.2488932728567455 4 -0.1011962890625 5 Unmodified _YSIDRNTDL_ CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;ENSG00000081138|ENST00000397968|CDH7 7.289230182591677 0.29575926068275815 1 [H{I|L}]N[PG]VQQG{M(Oxidation (M))|F} 10 10 + 23.645 0 0 2.1584 2.1584 80.357 0 0 0 2.843181179205061 3.2121122500096533 2.843181179205061 3.5218251811136234 0 0 0 0 0 [H{I|L}]N[PG]VQQG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[RP]AEN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D[RP][QA]{M(Oxidation (M))|F};[H{I|L}]N[RP]D[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[RP]D[QA]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D[RP]M[KS];[H{I|L}]ND[RP][TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[RP][WQ]{M(Oxidation (M))|F};N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A[RP]{I|L}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[RP]AEGG{M(Oxidation (M))|F} 2.1584;1.8369;1.5621;1.5621;1.1266;1.1266;1.1266;1.0848;1.0381;0.99635 -;-;-;-;-;-;-;-;-;- 458 + NaN NaN 114405.9 NaN 17310 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21277 85.96 NaN 203350 35 0 20476 0.261 + -1 YINYCMSLF 9 56 605.7670602508978 1209.5195675685954 2 605.7672119140625 MULTI HCD FTMS 0 0 0 21271 81174.2265625 0.9939668248549176 -1 0.019500732421875 6 Carbamidomethyl (C) _YINYC(Carbamidomethyl (C))MSLF_ REV__ENSG00000174804|ENST00000531380|FZD4 9.38312468134398 0.279288223203164 1 Y{I|L}{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.3305 0 0 768.2975941388687 0 768.2975941388687 0 5.280287236002437 0 0 0 0.5 0 0 0 Y{I|L}{M(Oxidation (M))|F} 2.3305 - 40 NaN NaN 126780.8 NaN 17311 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21278 85.964 NaN 101160 35 0 23654 0.261 + 21794 QAIVDAEWNIL 11 42 636.3353854394688 1270.6562179457376 2 636.3345336914062 MULTI HCD FTMS 0 0 0 21271 47806.46484375 0.7138330546661004 1 -0.03607940673828125 7 Unmodified _QAIVDAEWNIL_ ENSG00000135624|ENST00000258091|CCT7;ENST00000479109.2_1_5:92225632-92225905:-|nuORF;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 8.444304893310646 0.381886813817475 1 WN{I|L}{I|L} 4 7 32.735 0 0 2.5762 0 0 726.3544178693375 0 726.3544178693375 0 25.74539712336197 0 0 0 0 0 0 0.3807196863200844 + WN{I|L}{I|L} 2.5762 + + 18 NaN NaN 115442.9 NaN 17312 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21279 85.967 NaN 92395 35 0 13844 0.262 + 18395 MPQPDFSFL 9 47 541.2549651579343 1080.4953773826685 2 541.254150390625 MULTI HCD FTMS 0 0 0 21271 65988.015625 0.7897501952060152 5 -0.12725067138671875 8 Unmodified _MPQPDFSFL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 15.248480904072842 0.22861284681709862 1 {M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 4 5 33.928 0 0 3.14 0 0 568.2291737287125 0 568.2291737287125 0 28.24153794511119 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 3.14 + + 26 NaN NaN 92773.9 NaN 17313 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21280 85.97 NaN 113850 35 0 10289 0.261 + 8623 HEALPAVSN 9 45 469.24079579494645 NaN 0 469.22503662109375 PEAK HCD FTMS 0 0 0 21271 10999.28125 0.9837779577063129 1 -0.03607940673828125 9 Unmodified _HEALPAVSN_ ENST00000541464.5_3_16:19421875-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000563675.5_1_16:19421837-19441949:+|nuORF 1.6526216038709556 0.28723846860855273 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96859.5 NaN 17314 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21281 85.974 NaN 67044 35 0 3728.1 0.261 + 31772 VYLQDIHCVGS 11 45 617.2991995434177 1232.5838461536352 2 618.2794189453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VYLQDIHCVGS_ ENSG00000031081|ENST00000264245|ARHGAP31 4.897010918128616 0.3974440401582579 1 M{I|L}QMY 5 9 16.229 0 0 1.3167 0 0 130.09885524167936 433.17011438541255 563.2689696270919 0 0 0 0 0 0 0 0 0.4247425010840047 M{I|L}QMY 1.3167 - 40 + NaN NaN 99782.5 NaN 17315 3964 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21283 85.979 NaN 770700 35 0 68411 0.327 -1 MYELCTPEL 9 107 578.256513482092 1154.498474030984 2 578.2576293945312 MULTI HCD FTMS 0 0 0 21282 69729.8515625 0.14374735428764362 7 -0.15447235107421875 1 Carbamidomethyl (C) _MYELC(Carbamidomethyl (C))TPEL_ ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14 10.823927491677226 0.26684000660059787 1 {I|L}{I|L}QE{I|L} 5 -1 30.188 0 0 2.6148 0 0 540.1332529389903 0 540.1332529389903 0 9.280227737694922 0 0 0 0.7302046884880937 0 0.8807196863200843 0.23965182871044374 {I|L}{I|L}QE{I|L} 2.6148 - 2166 + NaN NaN 206643.9 NaN 17316 3965 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21284 85.983 NaN 290480 35 0 37242 0.261 -1 PNMVDCVYSF 10 59 624.2588049654054 1246.5030569976107 2 624.2581176757812 MULTI HCD FTMS 0 0 0 21282 92628.296875 0.41547480639373907 2 -0.03565216064453125 2 Carbamidomethyl (C),Oxidation (M) _PNM(Oxidation (M))VDC(Carbamidomethyl (C))VYSF_ HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 15.248480904072842 0.3684828712757339 1 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 6 -1 61.631 0 0 4.9443 0 0 484.1452809064469 0 484.1452809064469 0 44.32380653375944 0 0 0 2.3494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 4.9443 - 252 NaN NaN 125987.6 NaN 17317 3965 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21285 85.987 NaN 178480 35 0 45557 0.264 -1 0 43 404.12098086082074 806.2274087884415 2 404.12109375 MULTI HCD FTMS 0 0 0 21282 40389.23828125 0.6266991236033115 -8 0.20568084716796875 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.6738 0 0 641.1483357677369 0 641.1483357677369 0 1.9280313679915633 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6738 - 15 + NaN NaN 105955.2 NaN 17318 3965 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21286 85.99 NaN 156780 35 0 19100 0.261 + 32976 YAPPYVLE 8 46 476.24487196325043 NaN 0 476.2445373535156 PEAK HCD FTMS 0 0 0 21282 20507.333984375 0.5369115899724256 1 -0.0161895751953125 4 Unmodified _YAPPYVLE_ REV__ENSG00000160685|ENST00000535420|ZBTB7B;REV__nc|ENSG00000160685|O15156-2|ZBTB7B;REV__ZBTB7B|p.E279K|1|0.17|ENSG00000160685|chr1:155015495-155015495|G/A|missense_variant 20.871210003555333 0.3841330378571171 1 A 1 -1 10.485 0 0 1.1031 0 0 163.0663519699945 713.3520418637821 876.4183938337767 0 0 0 0 0 0.5 0 0 0 A 1.1031 + + 3 + NaN NaN 107313.3 NaN 17319 3965 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21288 85.995 NaN 985650 35 0 115420 0.327 + 30161 VGVPTRAR 8 68 428.26140148605253 854.5082500389051 2 428.26153564453125 MULTI HCD FTMS 0 0 0 21287 1088127 0.40045303322488995 6 -0.13828277587890625 1 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 5.230669730166228 0.5342319408533849 1 P 1 7 9.6041 0 0 1.1239 0 0 634.3772666178098 120.05044733218983 754.4277139499997 0 0 0 0 0 0.5 0 0 0 + P 1.1239 + + 4 + NaN NaN 227141.2 NaN 17320 3966 21287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21289 85.999 NaN 560850 35 0 52036 0.261 -1 0 70 436.7746692619769 871.5347855907538 2 436.7747802734375 MULTI HCD FTMS 0 0 0 21287 606686.4375 0.3963333203767047 6 -0.13828277587890625 2 NaN NaN 1 P 1 -1 9.6041 0 0 1.102 0 0 651.4038174284476 120.05044733218983 771.4542647606374 0 0 0 0 0 0.5 0 0 0 P 1.102 - 17 + NaN NaN 164691.1 NaN 17321 3966 21287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21290 86.003 NaN 773490 35 0 281530 0.261 + 34160 YPDEIEYIF 9 53 594.7768256128962 1187.5390982925924 2 594.77685546875 MULTI HCD FTMS 0 0 0 21287 609502.5625 0.7243711694355871 3 -0.074981689453125 3 Unmodified _YPDEIEYIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 26.88365393820708 0.12808753336095696 1 EY{I|L}{M(Oxidation (M))|F} 4 5 49.24 0 0 4.1464 0 0 617.268446904437 0 617.268446904437 0 33.37585399569107 0 0 0 1.5 0 0.3807196863200844 0 + EY{I|L}{M(Oxidation (M))|F} 4.1464 + + 36 NaN NaN 202145.7 NaN 17322 3966 21287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21291 86.006 NaN 877470 35 0 95536 0.261 + -1 FSCCPDDRI 9 86 585.2396694030055 1168.4647858728108 2 585.2400512695312 MULTI HCD FTMS 0 0 0 21287 205904.640625 0.2777603371157485 3 -0.074981689453125 4 2 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))C(Carbamidomethyl (C))PDDRI_ REV__ENSG00000267710|ENST00000649256|EDDM13 9.38312468134398 0.279288223203164 1 PEWQD{M(Oxidation (M))|F}N 7 -1 41.177 0 0 3.524 0 0 234.10008437324376 0 234.10008437324376 0 -0.9387180882598045 -0.9387180882598045 0 0 0.3252574989159953 0 0 0 PEWQD{M(Oxidation (M))|F}N 3.524 - 905 NaN NaN 211270.7 NaN 17323 3966 21287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21292 86.009 NaN 133970 35 0 8315.7 0.261 + 17898 MILELDPTF 9 53 547.7760457540359 NaN 0 547.7761840820312 PEAK HCD FTMS 0 0 0 21287 21464.390625 0.30978325764013803 -1 0.0161895751953125 5 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 42.09456458481378 0.07155800144855468 1 {M(Oxidation (M))|F}RD 3 7 21.682 0 0 1.9828 0 0 312.2094878930341 360.1569349780745 672.3664228711086 0 0 0 0 0 1 0 0 0 {M(Oxidation (M))|F}RD 1.9828 - 42 + NaN NaN 99013.6 NaN 17324 3966 21287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21294 86.014 NaN 7185700 35 0 1142300 0.327 + 31604 VYILAMVFDM 10 101 601.3032067421717 1200.5918605511433 2 601.3037719726562 MULTI HCD FTMS 0 0 0 21293 5915899 0.7621593776416677 -2 0.03565216064453125 1 Unmodified _VYILAMVFDM_ REV__ENSG00000170412|ENST00000392627|GPRC5C;REV__nc|ENSG00000170412|Q9NQ84-2|GPRC5C 42.09456458481378 0.12723037877173987 1 VY{I|L}EE{[CA]|SS}YV{I|L} 10 -1 + 66.393 0 0 5.53 5.53 83.158 0 0 0 1.8490050209015578 1.8490050209015578 1.8490050209015578 1.8490050209015578 0 2.274227503252014 1.6989700043360187 1.079689690656103 0 VY{I|L}EE{[CA]|SS}YV{I|L};[YV]WDM{I|L}YV{I|L};VYWDM{I|L}YV{I|L};[YV]WDM{I|L}VY{I|L};[YV]WDM{I|L}Y{I|L}V;[YV]WDMVY{I|L}{I|L};[YV]W{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}M{I|L};[YV]W{[ET]|[MV]}{M(Oxidation (M))|F}M{I|L}{I|L};[YV]WDMV{I|L}Y{I|L};VY{I|L}{M(Oxidation (M))|F}{[ET]|[MV]}WM{I|L} 5.53;5.376;5.3252;4.9122;4.6201;4.5786;4.5632;4.4947;4.4117;4.3529 -;-;-;-;-;-;-;-;-;- 2535 + NaN NaN 771058.6 NaN 17325 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21295 86.019 NaN 627610 35 0 26013 0.261 -1 0 109 589.3430503555608 1176.6715477779214 2 589.34326171875 MULTI HCD FTMS 0 0 0 21293 613330.375 0.44748067015539117 -10 0.2413330078125 2 NaN NaN 1 V 1 -1 7.7423 0 0 0.65798 0 0 850.4777996265473 224.09746729068596 1074.5752669172332 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.65798 - 76 + NaN NaN 190266.1 NaN 17326 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21296 86.022 NaN 1009800 35 0 170100 0.261 + 34137 YPAEWQDFL 9 97 584.7690720674609 1167.5235912017217 2 584.7689819335938 MULTI HCD FTMS 0 0 0 21293 326876.28125 1 0 0 3 Unmodified _YPAEWQDFL_ ENSG00000048162|ENST00000614830|NOP16 49.55428908609986 0.03219431099695407 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEWQD{M(Oxidation (M))|F}{I|L} 9 2 + 81.001 0 0 6.9379 6.9379 89.659 0 0 0 19.621892823592972 53.042359562158126 19.621892823592972 9.208187539523749 0 1.7302046884880937 1.3979400086720375 0.28872548999643577 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEWQD{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEW[AG]D{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}[TP]WQD{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PN[NS]QVY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PE[QT]{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}[TP]W[AG]D{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PGG[NS]QVY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PN[NS][AG]VY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PN{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PDD{[NV]|[RG]}VY{I|L} 6.9379;6.1492;4.4994;4.3062;3.8156;3.7107;3.5212;3.5212;3.1743;2.7838 -;-;-;-;-;-;-;-;-;- 1572 NaN NaN 248151.2 NaN 17327 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21297 86.026 NaN 771460 35 0 41014 0.261 + 7884 FYTQLLQEL 9 112 577.8074687761521 1153.600384619104 2 578.320556640625 MULTI HCD FTMS 0 0 0 21293 51242.48046875 0.4979795840926232 -2 0.03565216064453125 4 Unmodified _FYTQLLQEL_ ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540|SMG7;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant 63.227496030279354 0.01306643085373406 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{I|L}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}T{M(Oxidation (M))|F} 9 6 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} + + 43.281 1.7339 0.66657 3.7518 3.7518 59.823 0 0 0 0 26.598425963343285 0 0 0 1.579689690656103 0 0.6549471895720984 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{I|L}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}T{M(Oxidation (M))|F} 3.7518 - 2330 + NaN NaN 204660 NaN 17328 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21298 86.029 NaN 192230 35 0 51020 0.261 + 31703 VYLALLPPD 9 44 500.7885191112196 999.5624852892392 2 500.7886047363281 MULTI HCD FTMS 0 0 0 21293 93232.5234375 0.594125153500315 3 -0.07653045654296875 5 Unmodified _VYLALLPPD_ ENSG00000159228|ENST00000290349|CBR1;ENSG00000159231|ENST00000290354|CBR3;ENST00000530908.5_1_21:37444388-37445177:+|nuORF 16.942295170755138 0.21397866736869717 1 VY{I|L}SS 5 6 58.672 0 0 5.8698 0 0 0 447.2574862115844 447.2574862115844 37.70303756120384 0 0 0 0 0.8494850021680094 2 0 0 VY{I|L}SS 5.8698 - 53 + NaN NaN 106489.1 NaN 17329 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21299 86.032 NaN 194830 35 0 25589 0.261 -1 PNMVDCVYSF 10 52 624.2588049654054 1246.5030569976107 2 624.7611694335938 MULTI HCD FTMS 0 0 0 21293 78391.609375 0.7303840232939643 4 -0.10594940185546875 6 Carbamidomethyl (C),Oxidation (M) _PNM(Oxidation (M))VDC(Carbamidomethyl (C))VYSF_ HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 10.799506525563784 0.4100970765206026 1 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 6 -1 65.878 0 0 5.2851 0 0 484.1456776349625 0 484.1456776349625 0 60.39381281052492 0 0 0 2.3494850021680094 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 5.2851 - 75 NaN NaN 111695.7 NaN 17330 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21300 86.036 NaN 126560 35 0 8825.4 0.261 -1 MNCPGHCLMF 10 53 621.2323544809577 NaN 0 621.2320556640625 PEAK HCD FTMS 0 0 0 21293 20724.474609375 0.45585619853755605 4 -0.10594940185546875 7 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))NC(Carbamidomethyl (C))PGHCLM(Oxidation (M))F_ ENSG00000113407|ENST00000265112|TARS1;ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000113407|P26639-2|TARS1;nc|ENSG00000185418|A2RTX5-2|TARS3 1.6526216038709556 0.33876987398426067 1 N 1 -1 3.4949 0 0 0.28174 0 0 701.2139022218779 422.17112146549067 1123.3850236873686 0 0 0 0 0 0 0 0 0 N 0.28174 + + 2 + NaN NaN 112631.7 NaN 17331 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21301 86.039 NaN 126550 35 0 12226 0.261 + -1 VYMMVTTMLL 10 54 617.2991995434177 1232.5838461536352 2 617.2975463867188 MULTI HCD FTMS 0 0 0 21293 52876.38671875 0.600180785531624 -2 0.03565216064453125 8 2 Oxidation (M) _VYM(Oxidation (M))M(Oxidation (M))VTTMLL_ REV__ENST00000505992.1_1_4:99806121-99806199:-|nuORF 20.453626601364224 0.3197956946484955 1 [YV]{I|L} 3 -1 37.447 0 0 3.0381 0 0 0 854.3455093218571 854.3455093218571 14.259687322722812 0 0 0 0 1 1.6989700043360187 0 0 [YV]{I|L} 3.0381 - 42 NaN NaN 102572.9 NaN 17332 3967 21293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21303 86.044 NaN 1761600 35 0 73260 0.327 + 14118 LAAPLRHAER 10 129 567.3304148038226 1132.646276674445 2 567.3307495117188 MULTI HCD FTMS 0 0 0 21302 1755602.875 0.4538880159320741 -18 0.41764068603515625 1 Unmodified _LAAPLRHAER_ ENSG00000150471|ENST00000683033|ADGRL3 5.731851221503515 0.44496410492002586 1 [{I|L}T]{[TV]|[{I|L}S]}QN[{I|L}V]V{M(Oxidation (M))|F} 10 9 [{I|L}T]{[TV]|[{I|L}S]}QN[{I|L}V]V + + 12.218 -17.367 -1.7949 1.0788 1.0788 58.823 0 0 0 0 0.7867280143914641 0 0 0 0 0 0 0 [{I|L}T]{[TV]|[{I|L}S]}QN[{I|L}V]V{M(Oxidation (M))|F} 1.0788 - 983 + NaN NaN 357085.7 NaN 17333 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21304 86.048 NaN 221800 35 0 8791.1 0.261 + 33866 YLLLMLDIL 9 83 553.8301034429838 1105.6456539527676 2 553.83056640625 MULTI HCD FTMS 0 0 0 21302 246981.359375 0.11992276021121351 69 -1.711761474609375 2 Unmodified _YLLLMLDIL_ REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF 4.75600775471527 0.31496297302216103 1 A 1 -1 8.0989 0 0 0.73251 0 0 105.07656317399774 926.5194796197874 1031.596042793785 0 0 0 0 0 0.5 0 0 0 A 0.73251 - 91 + NaN NaN 109759.1 NaN 17334 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21305 86.052 NaN 536460 35 0 54499 0.261 + 29517 TYVTILPEL 9 61 524.7999065637616 1047.5852601943232 2 524.7999877929688 MULTI HCD FTMS 0 0 0 21302 127373.078125 0.15617733199724854 14 -0.35111236572265625 3 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 65.23502041540118 0.010630085227462206 1 [YT]VT{I|L}{I|L}[EP]{I|L} 9 0 + 55.559 0 0 5.3035 5.3035 89.572 0 0 0 13.542009948719723 38.39178563338896 13.542009948719723 18.138181262758266 0 1.8684151806525389 1.6989700043360187 0.805462187404089 0 + + [YT]VT{I|L}{I|L}[EP]{I|L};[YT]V{I|L}{I|L}T[EP]{I|L} 5.3035;3.5721 +;- + 176 NaN NaN 162024.5 NaN 17335 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21306 86.055 NaN 652890 35 0 35127 0.261 -1 MPDYMILQE 9 111 578.256513482092 1154.498474030984 2 578.7711181640625 MULTI HCD FTMS 0 0 0 21302 22499.052734375 0.09165209506733753 8 -0.20742034912109375 4 Oxidation (M) _M(Oxidation (M))PDYMILQE_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 13.90604991867851 0.24021115267848145 1 E{I|L} 2 -1 19.966 0 0 1.7294 0 0 894.3812123029312 0 894.3812123029312 0 1.5489314050173988 0 0 0 0.28872548999643577 0 0 0 E{I|L} 1.7294 - 1378 NaN NaN 183247.3 NaN 17336 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21307 86.058 NaN 817090 35 0 65726 0.261 + 13468 KYPENFFLL 9 101 585.8133314392081 1169.6121099452162 2 585.8134765625 MULTI HCD FTMS 0 0 0 21302 125966.328125 0.47456965323608336 -35 0.8047103881835938 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 28.494509381512117 0.11816142465008336 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 4 + 43.583 0 0 3.7263 3.7263 80.463 0 0 0 1.8293068358598674 14.97302484056647 1.8293068358598674 1.8293068358598674 0 1.0941876774005248 1.3010299956639813 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}QQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][DP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQ[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[AG]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}Q[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}[AG]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][DP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.7263;3.5699;3.487;3.4046;2.939;2.7826;2.7826;2.6998;2.6998;2.6173 -;-;-;-;-;-;-;-;-;- 1867 NaN NaN 210949.6 NaN 17337 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21308 86.062 NaN 291250 35 0 14711 0.261 + -1 YVLYMWDLP 9 84 608.2931841508064 1214.5718153684127 2 608.2930908203125 MULTI HCD FTMS 0 0 0 21302 86710.0546875 0.565564001818547 -1 0.0294647216796875 6 Oxidation (M) _YVLYM(Oxidation (M))WDLP_ REV__ENSG00000115486|ENST00000233838|GGCX;REV__ENST00000481541.1_1_2:85786016-85788551:-|nuORF;REV__ENST00000496962.1_1_2:85786016-85788551:-|nuORF;REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;REV__nc|ENSG00000115486|P38435-2|GGCX 24.67388899826682 0.14717941214954053 1 [YV]{I|L}Y 4 -1 36.911 0 0 3.039 0 0 0 673.2691779995251 673.2691779995251 16.453650195120844 0 0 0 0 1 1.5228787452803376 0 0 [YV]{I|L}Y 3.039 + + 155 NaN NaN 130606 NaN 17338 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21309 86.065 NaN 106740 35 0 10773 0.262 + 278 AFLSSDFLL 9 47 506.7714080186058 1011.5282631040117 2 506.7712707519531 MULTI HCD FTMS 0 0 0 21302 21034.373046875 0.2314169761437818 5 -0.125579833984375 7 Unmodified _AFLSSDFLL_ ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 7 25.969 0 0 2.5673 0 0 767.3492796457014 0 767.3492796457014 0 17.01667520279372 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.5673 + + 7 NaN NaN 103228.3 NaN 17339 3968 21302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21311 86.07 NaN 763930 35 0 43967 0.327 -1 0 110 575.8429950900887 1149.6714372469773 2 575.843017578125 MULTI HCD FTMS 0 0 0 21310 739756.0625 0.40017362578541377 -20 0.48316192626953125 1 NaN NaN 1 QV 2 -1 10.846 0 0 0.9434 0 0 651.4040870499488 268.12397180728755 919.5280588572364 0 0 0 0 0 0.28872548999643577 0 0 0 QV 0.9434 - 194 + NaN NaN 195978.4 NaN 17340 3969 21310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21312 86.076 NaN 916570 35 0 141350 0.272 + 6785 FPQYVMDVL 9 87 556.278238400494 1110.541923867788 2 556.2783813476562 MULTI HCD FTMS 0 0 0 21310 575801.5 0.73233860142833 2 -0.0504302978515625 2 Unmodified _FPQYVMDVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 45.69961567697781 0.039180348357221985 1 {I|L}EQVMDV{I|L} 8 3 69.275 0 0 6.2379 0 0 165.04612929511876 0 165.04612929511876 0 36.08722800419039 0 0 0 2.024227503252014 0 0.3807196863200844 0.23965182871044374 {I|L}EQVMDV{I|L} 6.2379 - 1123 NaN NaN 217466.5 NaN 17341 3969 21310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21313 86.079 NaN 414690 35 0 31277 0.261 -1 KMKMKKQIK 9 96 597.8564781435832 1193.6984033539663 2 597.8567504882812 MULTI HCD FTMS 0 0 0 21310 289112.65625 0.4882610220184935 -4 0.0911712646484375 3 2 Oxidation (M) _KM(Oxidation (M))KM(Oxidation (M))KKQIK_ ENST00000343505.9_2_6:138768140-138794549:-|nuORF 1.844237919475145 0.33703635659052655 1 E 1 -1 7.4743 0 0 0.62614 0 0 132.22662389842282 929.4041319234973 1061.63075582192 0 0 0 0 0 0 0 0.3494850021680094 0 E 0.62614 - 50 + NaN NaN 153793.1 NaN 17342 3969 21310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21314 86.083 NaN 242970 35 0 59002 0.262 + 28211 TLCDSIILI 9 46 495.780437370278 989.546321807356 2 495.78045654296875 MULTI HCD FTMS 0 0 0 21310 126030.3125 0.4318451607818715 6 -0.1519012451171875 4 Unmodified _TLCDSIILI_ tr|U7SV75|U7SV75_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01157PE=4SV=1 36.04419817259434 0.08350412372117409 1 {I|L}{I|L}{I|L}{I|L} 4 5 42.053 0 0 4.2497 0 0 519.1984120099625 0 519.1984120099625 0 36.56804392152253 0 0 0 1.25 0 0 0 + {I|L}{I|L}{I|L}{I|L} 4.2497 + + 44 NaN NaN 136904.6 NaN 17343 3969 21310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21315 86.086 NaN 313140 35 0 25499 0.261 + 11057 IYFTDREHF 9 63 614.293389579463 1226.572226225726 2 614.7933959960938 MULTI HCD FTMS 0 0 0 21310 81533.640625 0.6437695165442557 9 -0.23370361328125 5 Unmodified _IYFTDREHF_ REV__ENSG00000125304|ENST00000376387|TM9SF2;REV__TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant 13.90604991867851 0.24021115267848145 1 [YN]AW[RP]HH{M(Oxidation (M))|F} 9 -1 + 52.435 0 0 4.2749 4.2749 81.589 0 0 0 12.122417598921643 3.0102999566398125 3.0102999566398125 3.0102999566398125 0 0.3494850021680094 1.3979400086720375 0 0.5629529932484498 [YN]AW[RP]HH{M(Oxidation (M))|F};[YN]AWVYQ[NG]{I|L};[Y{I|L}][DP][{I|L}A]DHH{M(Oxidation (M))|F};[YN]AWVY[AG][NG]{I|L};[Y{I|L}]EEV[PG]HH{M(Oxidation (M))|F};[Y{I|L}]YHGYQ[NG]{I|L};[YN][W{I|L}]GYQ[NG]{I|L} 4.2749;4.0295;3.2866;3.2824;3.0839;2.4635;2.1754 -;-;-;-;-;-;- 498 NaN NaN 139033.1 NaN 17344 3969 21310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21317 86.091 NaN 1810800 35 0 509810 0.327 + 1327 AYPEYLITF 9 71 558.784318404542 1115.5540838758839 2 558.7846069335938 MULTI HCD FTMS 0 0 0 21316 1006515.125 0.0970667500602017 10 -0.24835968017578125 1 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 107.99703571036002 0.003269392969029945 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 76.973 0 0 6.9 6.9 90.727 0 0 0 8.316585280883558 47.0217596488785 8.316585280883558 10.548312160122109 0 2.7302046884880937 1.3010299956639813 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L};[{I|L}T][YE][{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[EP]YAY{I|L}[{M(Oxidation (M))|F}T]{I|L};[{M(Oxidation (M))|F}T][DP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L};[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[EP]Y{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F} 6.9;5.9544;5.2661;3.8185;3.4456;2.8729;2.1846;1.2651;1.1577 +;-;-;-;-;-;-;-;- + 437 NaN NaN 355126.2 NaN 17345 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21318 86.095 NaN 470970 35 0 93155 0.261 + 31641 VYISSLALL 9 54 489.7972367425237 977.5799205518474 2 489.7972412109375 MULTI HCD FTMS 0 0 0 21316 285953.21875 0.26074483209354793 7 -0.1865081787109375 2 Unmodified _VYISSLALL_ ENSG00000115233|ENST00000409682|PSMD14 131.29775728308752 0.0005262696486345744 1 [YV]{I|L}SS{I|L}A{I|L}{I|L} 9 0 + 95.927 0 0 9.8127 9.8127 98.68 0 0 0 18.741436528314566 58.314243664528576 18.741436528314566 55.530549546138914 0 2.6307196863200843 1.3979400086720375 1.579689690656103 0 + + [YV]{I|L}SS{I|L}A{I|L}{I|L};[{I|L}A]{[TV]|[{I|L}S]}S[YV]{I|L}{I|L};[{I|L}A]{[TV]|[{I|L}S]}S{I|L}[YV]{I|L} 9.8127;4.1322;2.6982 +;-;- + 276 NaN NaN 147896.1 NaN 17346 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21319 86.099 NaN 693880 35 0 44745 0.261 -1 0 92 545.3168208601961 1088.6190887871921 2 545.3173217773438 MULTI HCD FTMS 0 0 0 21316 408518 0.11331705957544867 56 -1.3700790405273438 3 NaN NaN 1 AQ{I|L}W 4 -1 19.527 0 0 1.7937 0 0 282.1687372150928 305.1597994440063 587.3285366590991 0 0 0 0 0 0.75 0 0 0 AQ{I|L}W 1.7937 - 262 + NaN NaN 187137.2 NaN 17347 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21320 86.102 NaN 298740 35 0 22947 0.261 + -1 IPEVYRGMML 10 70 612.8098796319376 1223.6052063306752 2 612.8097534179688 MULTI HCD FTMS 0 0 0 21316 50319.09765625 0.4908957634924331 3 -0.07851409912109375 4 Oxidation (M) _IPEVYRGM(Oxidation (M))ML_ REV__ENSG00000167658|ENST00000309311|EEF2 21.536976647645854 0.3096624038397699 1 {I|L}PVEE 5 -1 38.346 0 0 3.1339 0 0 0 653.2921846979124 653.2921846979124 13.909328277719766 0 0 0 0 0.3807196863200844 0 0.6747425010840047 0 {I|L}PVEE 3.1339 - 98 + NaN NaN 145316 NaN 17348 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21321 86.105 NaN 226170 35 0 29622 0.262 + 33131 YEDALPILV 9 58 516.7841678504776 1031.5537827677551 2 516.7842407226562 MULTI HCD FTMS 0 0 0 21316 34316.0703125 0.5144926110290023 1 -0.0294189453125 5 Unmodified _YEDALPILV_ REV__ENSG00000134453|ENST00000379888|RBM17;REV__RBM17-PRKACB|1|fusion;REV__RBM17-PRKACB|2|fusion;REV__RBM17-PRKACB|3|fusion 15.847184025352803 0.2234401846867398 1 {I|L}{I|L}V 3 -1 30.445 0 0 2.9514 0 0 688.306444236525 0 688.306444236525 0 12.028937514676482 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}V 2.9514 + + 77 NaN NaN 119934.3 NaN 17349 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21322 86.109 NaN 106230 35 0 31790 0.261 -1 PLILMSIIF 9 46 531.8171214443505 1061.619689955501 2 531.817626953125 MULTI HCD FTMS 0 0 0 21316 11070.40625 0.07453623808640113 12 -0.304046630859375 6 Oxidation (M) _PLILM(Oxidation (M))SIIF_ tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6004 0 0 896.5412578039369 0 896.5412578039369 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6004 + + 13 + NaN NaN 91337.1 NaN 17350 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21323 86.112 NaN 57738 35 0 5554.9 0.261 -1 0 26 484.2947707716326 483.2874943050326 1 484.2947692871094 MULTI HCD FTMS 0 0 0 21316 7282.90625 0.2506010739389327 5 -0.130889892578125 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84948.4 NaN 17351 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21324 86.115 NaN 87938 35 0 6738.6 0.261 + 30184 VHGPSHLA 8 57 409.2198303816154 NaN 0 409.50262451171875 PEAK HCD FTMS 0 0 0 21316 21166.533203125 0.7329704529568178 -4 0.0959930419921875 8 Unmodified _VHGPSHLA_ REV__ENSG00000223443|ENST00000333796|USP17L2;REV__ENSG00000225327|ENST00000530484|USP17L3;REV__ENSG00000226430|ENST00000530447|USP17L7;REV__ENSG00000230549|ENST00000529559|USP17L1;REV__ENSG00000236125|ENST00000526929|USP17L4;REV__ENSG00000237038|ENST00000527080|USP17L8 0.7936320650641473 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 1.9897 0 0 0.24371 0 0 319.2305715524902 347.1481112115844 666.3786827640746 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.24371 - 1 + NaN NaN 102405.9 NaN 17352 3970 21316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21326 86.12 NaN 347420 35 0 34054 0.327 -1 WPSLLGDML 9 55 524.2626333601839 1046.5107137871678 2 524.2625732421875 MULTI HCD FTMS 0 0 0 21325 73394.171875 0.4228308439699062 4 -0.101470947265625 1 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 36.12702656103203 0.08312389501731911 1 {I|L}GD{M(Oxidation (M))|F}{I|L} 5 -1 41.23 0 0 3.9398 0 0 483.24711806465 0 483.24711806465 0 27.840547268788285 0 0 0 1.579689690656103 0 0 0 {I|L}GD{M(Oxidation (M))|F}{I|L} 3.9398 + + 122 NaN NaN 138794.4 NaN 17353 3971 21325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21327 86.125 NaN 276920 35 0 18694 0.261 + 5622 FLYYPDPVL 9 71 563.7951754410748 1125.5757979489495 2 563.79443359375 MULTI HCD FTMS 0 0 0 21325 70867.875 0.9427679610832155 -1 0.0294189453125 2 Unmodified _FLYYPDPVL_ ENSG00000114554|ENST00000393409|PLXNA1 26.88365393820708 0.12808753336095696 1 [Y{I|L}]{M(Oxidation (M))|F}Y[DP]PV{I|L} 9 2 + 30.033 0 0 2.6682 2.6682 81.09 0 0 0 0.7699217471275013 8.0429000528617 0.7699217471275013 4.771212547196626 0 1.274227503252014 0 0 0 [Y{I|L}]{M(Oxidation (M))|F}Y[DP]PV{I|L};[Y{M(Oxidation (M))|F}]{I|L}Y[DP]PV{I|L};[Y{I|L}]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{[WT]|[RM]}{I|L};[Y{I|L}]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}[RP]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{[WT]|[RM]}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}[RP]{M(Oxidation (M))|F} 2.6682;2.2443;1.2553;0.98789;0.83144;0.564 -;-;-;-;-;- 585 NaN NaN 121654.5 NaN 17354 3971 21325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21328 86.128 NaN 203440 35 0 9203.3 0.261 + 25850 SLYLNILEL 9 70 539.3136949829009 1076.6128370326016 2 539.8152465820312 MULTI HCD FTMS 0 0 0 21325 19234.169921875 0.3817606330657388 -9 0.22333526611328125 3 Unmodified _SLYLNILEL_ REV__ENSG00000115423|ENST00000389394|DNAH6 29.84058131909904 0.11198220037953927 1 {I|L}{I|L}E{I|L} 4 -1 40.235 0 0 3.7372 0 0 590.3057013479107 0 590.3057013479107 0 25.542359562158126 0 0 0 1.1307196863200843 0 0 0 {I|L}{I|L}E{I|L} 3.7372 + + 57 NaN NaN 116722.5 NaN 17355 3971 21325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21330 86.133 NaN 389790 35 0 125390 0.327 + 34161 YPDEIEYIF 9 59 594.7768256128962 1187.5390982925924 2 594.7770385742188 MULTI HCD FTMS 0 0 0 21329 235761.109375 0.2801933265135372 9 -0.24216461181640625 1 Unmodified _YPDEIEYIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 25.399314129420986 0.14091189997036632 1 EY{I|L}{M(Oxidation (M))|F} 4 5 46.186 0 0 3.8892 0 0 617.267928640717 0 617.267928640717 0 25.01471284755077 0 0 0 1.4247425010840047 0 0 0 + EY{I|L}{M(Oxidation (M))|F} 3.8892 + + 45 NaN NaN 146671.3 NaN 17356 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21331 86.138 NaN 374360 35 0 55970 0.261 + 20284 NYNAVFNLL 9 57 534.2799613358255 1066.545369738451 2 534.280029296875 MULTI HCD FTMS 0 0 0 21329 141587.9375 0.5889358956411105 -1 0.01287078857421875 2 Unmodified _NYNAVFNLL_ ENSG00000186532|ENST00000305513|SMYD4;SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 52.268347100219714 0.028397529699942435 1 [YN]{[QG]|[NA]}V{M(Oxidation (M))|F}N{I|L}{I|L} 9 0 + 62.029 0 0 5.8159 5.8159 87.654 0 0 0 6.768630947058369 18.66460270953162 6.768630947058369 9.208187539523749 0 1.305462187404089 0 0 1.1861818737241734 + + [YN]{[QG]|[NA]}V{M(Oxidation (M))|F}N{I|L}{I|L};[YN]{[QG]|[NA]}V{M(Oxidation (M))|F}GG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}RRNT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}RRGGT{M(Oxidation (M))|F} 5.8159;4.9526;3.0804;2.2119 +;-;-;- + 108 NaN NaN 133125.2 NaN 17357 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21332 86.141 NaN 167890 35 0 18199 0.262 -1 0 57 436.7746692619769 871.5347855907538 2 436.7747802734375 MULTI HCD FTMS 0 0 0 21329 172940.0625 0.11297748715007304 12 -0.32076263427734375 3 NaN NaN 1 A 1 -1 10.797 0 0 1.2388 0 0 105.07894492135092 692.4035128229124 797.4824577442633 0 0 0 0 0 0.3807196863200844 0 0 0 A 1.2388 - 21 + NaN NaN 118329.1 NaN 17358 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21333 86.144 NaN 353120 35 0 35603 0.261 + 26984 SYLPFTEAF 9 59 537.7598978105991 1073.5052426879981 2 537.7607421875 MULTI HCD FTMS 0 0 0 21329 76276.6953125 0.028001325352842357 16 -0.442047119140625 4 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 58.678817012210395 0.019429721296335044 1 [YV]T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TEA{M(Oxidation (M))|F} 9 2 + 52.374 0 0 4.8788 4.8788 88.947 0 0 0 39.89454989793387 4.137342758552691 4.137342758552691 18.99674684468792 0 2.4247425010840047 0 0.3054621874040891 0 [YV]T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TEA{M(Oxidation (M))|F};[HV]E[W{M(Oxidation (M))|F}]P{I|L}{M(Oxidation (M))|F};[YV]C[W{M(Oxidation (M))|F}]P{I|L}{M(Oxidation (M))|F};[HN]N[W{M(Oxidation (M))|F}]P{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[Y{I|L}][DG]P{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VV{[{M(Oxidation (M))|F}D]|MM}TP{M(Oxidation (M))|F};[YV][DG][Y{I|L}]PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MG]|[TS]}{[{M(Oxidation (M))|F}D]|MM}TP{M(Oxidation (M))|F};[HN]GG[W{M(Oxidation (M))|F}]P{I|L}{M(Oxidation (M))|F};[YV]T[DV]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 4.8788;3.1092;2.3392;2.2228;2.1976;2.0336;1.8008;1.5079;1.36;1.3013 -;-;-;-;-;-;-;-;-;- 316 + NaN NaN 140820.8 NaN 17359 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21334 86.148 NaN 364880 35 0 49766 0.261 + 15961 LPPWLQDPEL 10 60 604.3213348949031 1206.628116856606 2 604.3208618164062 MULTI HCD FTMS 0 0 0 21329 96624.9921875 0.14013071994655815 -8 0.1905517578125 5 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 19.361941925380144 0.3300069447713393 1 D[Q{I|L}]DNV{M(Oxidation (M))|F} 7 7 28.492 0 0 2.3613 0 0 357.18976112027957 0 357.18976112027957 0 2.80548965182966 0 0 0 1.4247425010840047 0 0 0 D[Q{I|L}]DNV{M(Oxidation (M))|F} 2.3613 - 128 NaN NaN 140290 NaN 17360 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21335 86.151 NaN 200480 35 0 18553 0.261 + 33262 YFIPELFE 8 48 529.2658906467601 NaN 0 529.254638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YFIPELFE_ tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1 10.183394434864962 0.38822285293237185 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}V 4 5 19.553 0 0 1.8507 0 0 131.11850203702483 400.1293123834594 531.2478144204842 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}V 1.8507 - 31 + NaN NaN 113823.7 NaN 17361 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21336 86.154 NaN 122460 35 0 19959 0.261 + -1 ELCTARLDADL 11 42 638.81431138815 1275.6140698431 2 638.814208984375 MULTI HCD FTMS 0 0 0 21329 69119.8046875 0.6795539953450739 -8 0.1905517578125 7 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))TARLDADL_ REV__ENSG00000213339|ENST00000250237|QTRT1;REV__ENST00000421333.6_1_19:10818158-10823081:+|nuORF;REV__ENST00000585885.5_1_19:10818158-10819649:+|nuORF;REV__ENST00000589488.5_1_19:10812118-10823081:+|nuORF 6.630372943996041 0.3898421031449734 1 R[PG]ME{I|L} 6 -1 34.213 0 0 2.6821 0 0 574.2386341779312 0 574.2386341779312 0 29.609178215846654 0 0 0 0.8807196863200843 0 0 0 R[PG]ME{I|L} 2.6821 - 57 NaN NaN 102118.2 NaN 17362 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21337 86.158 NaN 165830 35 0 29530 0.264 -1 0 39 404.12098086082074 806.2274087884415 2 404.1210021972656 MULTI HCD FTMS 0 0 0 21329 39639.78125 0.6150701827108868 -1 0.01287078857421875 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 105592.2 NaN 17363 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21338 86.161 NaN 128550 35 0 11867 0.261 -1 MYPDLSELLM 10 47 622.2829700630073 NaN 0 622.2837524414062 PEAK HCD FTMS 0 0 0 21329 53127.9765625 0.8871827088906317 -1 0.01287078857421875 9 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 36.12702656103203 0.15814681568024677 1 {I|L}{I|L}ES[MN]{I|L} 7 -1 37.523 0 0 3.0199 0 0 165.04281816013446 274.08258997135005 439.1254081314845 0 0 0 0 0 1.305462187404089 0 0.4247425010840047 0 {I|L}{I|L}ES[MN]{I|L} 3.0199 - 26 + NaN NaN 100674.1 NaN 17364 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21339 86.164 NaN 122570 35 0 8713.1 0.261 -1 MILELDPTF 9 55 547.7760457540359 NaN 0 547.7755737304688 PEAK HCD FTMS 0 0 0 21329 31718.255859375 0.4577714223732165 5 -0.14421844482421875 10 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 32.30548876998284 0.10480114246275442 1 D{I|L} 2 -1 17.078 0 0 1.5618 0 0 363.18100462234037 499.2229403131469 862.4039449354873 0 0 0 0 0 1 0 0 0 D{I|L} 1.5618 - 47 + NaN NaN 121904.9 NaN 17365 3972 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21341 86.169 NaN 3300600 35 0 567410 0.327 + 31605 VYILAMVFDM 10 91 601.3032067421717 1200.5918605511433 2 601.3038330078125 MULTI HCD FTMS 0 0 0 21340 2759671.5 0.35553506118604256 4 -0.10799407958984375 1 Unmodified _VYILAMVFDM_ REV__ENSG00000170412|ENST00000392627|GPRC5C;REV__nc|ENSG00000170412|Q9NQ84-2|GPRC5C 34.10243960390752 0.1965851268881605 1 VY{I|L}{M(Oxidation (M))|F}E{[CA]|SS}M{I|L}{I|L} 10 -1 + 62.268 0 0 5.1864 5.1864 82.91 0 0 0 3.5391719390811716 2.6979531151190628 2.6979531151190628 2.6979531151190628 0 1.274227503252014 1.6989700043360187 1.110924374808178 0 VY{I|L}{M(Oxidation (M))|F}E{[CA]|SS}M{I|L}{I|L};VY{I|L}{M(Oxidation (M))|F}E{[CA]|SS}{I|L}M{I|L};[YV]{I|L}{[CA]|SS}E{M(Oxidation (M))|F}{I|L}M{I|L};VY{I|L}{M(Oxidation (M))|F}E{[WT]|[RM]}M{I|L};[YV]{I|L}{[CA]|SS}E{M(Oxidation (M))|F}M{I|L}{I|L};[YV]{[WT]|[RM]}E{M(Oxidation (M))|F}{I|L}M{I|L};[YV]{[WT]|[RM]}E{M(Oxidation (M))|F}M{I|L}{I|L};VY{I|L}{M(Oxidation (M))|F}E{[CA]|SS}P{M(Oxidation (M))|F}{I|L};[Y{I|L}]V{[CA]|SS}E{M(Oxidation (M))|F}{I|L}M{I|L};[Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{M(Oxidation (M))|F}{I|L}M{I|L} 5.1864;4.9617;4.8916;4.8341;4.8231;4.764;4.6955;4.4793;4.1027;3.9751 -;-;-;-;-;-;-;-;-;- 1894 + NaN NaN 460291 NaN 17366 3973 21340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21342 86.174 NaN 935160 35 0 42611 0.261 -1 0 109 589.3430503555608 1176.6715477779214 2 589.34326171875 MULTI HCD FTMS 0 0 0 21340 1054873.25 0.7696266287789765 -4 0.09952545166015625 2 NaN NaN 1 Q 1 -1 7.2185 0 0 0.61347 0 0 590.3522543574855 455.24924646549067 1045.6015008229763 0 0 0 0 0 0.5 0 0 0 Q 0.61347 - 122 + NaN NaN 244690.2 NaN 17367 3973 21340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21343 86.177 NaN 665260 35 0 154190 0.261 + 34138 YPAEWQDFL 9 85 584.7690720674609 1167.5235912017217 2 584.7693481445312 MULTI HCD FTMS 0 0 0 21340 268078.03125 0.8201207815533419 6 -0.15699005126953125 3 Unmodified _YPAEWQDFL_ ENSG00000048162|ENST00000614830|NOP16 34.93206674587334 0.08860942999206235 1 WQD{M(Oxidation (M))|F}{I|L} 5 4 54.508 0 0 4.6687 0 0 460.19554335761876 0 460.19554335761876 0 33.081597033474424 0 0 0 1.805462187404089 0 0 0 + WQD{M(Oxidation (M))|F}{I|L} 4.6687 + + 818 NaN NaN 184888.5 NaN 17368 3973 21340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21344 86.181 NaN 54746 35 0 17945 0.261 + 2584 DTQQHVYSIF 10 18 619.2948654956318 1236.5751780580636 2 619.2958374023438 MULTI HCD FTMS 0 0 0 21340 55691.453125 1 0 0 4 Unmodified _DTQQHVYSIF_ REV__tr|U7SWZ0|U7SWZ0_FUSNUMethionineimportATP-bindingproteinMetNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01221PE=4SV=1 1.3295316138638542 0.46826628246186464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100728.6 NaN 17369 3973 21340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21345 86.184 NaN 60800 35 0 11390 0.264 + 31061 VSYFCEYWLF 10 38 452.8703651037304 NaN 0 452.8700256347656 PEAK HCD FTMS 0 0 0 21340 21771.75 0.665518059517019 1 -0.02291107177734375 5 Unmodified _VSYFCEYWLF_ ENSG00000146039|ENST00000377905|SLC17A4;nc|ENSG00000146039|Q9Y2C5-2|SLC17A4;nc|ENSG00000146039|Q9Y2C5-4|SLC17A4 0.776531954647913 0.3395196853010637 1 E 1 9 5.4846 0 0 0.60688 0 0 97.33635901429837 674.3162935846311 771.6526525989295 0 0 0 0 0 0 0 0 0 + E 0.60688 + + 1 + NaN NaN 93485.6 NaN 17370 3973 21340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21346 86.187 NaN 118900 35 0 9149.9 0.261 -1 MILELDPTF 9 50 547.7760457540359 NaN 0 547.77734375 PEAK HCD FTMS 0 0 0 21340 49708.34375 0.7174120583155756 6 -0.15699005126953125 6 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 39.957323273324995 0.07841223356700552 1 D{I|L} 2 -1 17.078 0 0 1.5618 0 0 363.1802882281568 499.2262056940063 862.4064939221631 0 0 0 0 0 1 0 0 0 D{I|L} 1.5618 - 63 + NaN NaN 95563.8 NaN 17371 3973 21340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21348 86.192 NaN 1759700 35 0 83123 0.327 + 393 AKFRKQERA 9 120 567.3304148038226 1132.646276674445 2 567.330810546875 MULTI HCD FTMS 0 0 0 21347 2394386.5 0.6190371144496691 -12 0.29534149169921875 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F} 1 8 12.218 0 0 1.0788 0 0 967.5676461586232 0 967.5676461586232 0 1.3810320596947445 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0788 + + 509 + NaN NaN 363212.9 NaN 17372 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21349 86.197 NaN 233720 35 0 8299.5 0.261 -1 0 83 553.8301034429838 1105.6456539527676 2 553.8305053710938 MULTI HCD FTMS 0 0 0 21347 186825.375 0.0907137878914877 75 -1.91082763671875 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2205 0 0 940.5666267084301 0 940.5666267084301 0 7.697953115119063 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2205 - 99 + NaN NaN 125662.4 NaN 17373 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21350 86.2 NaN 536710 35 0 66252 0.261 -1 YCYLLPTF 8 87 538.7585537374439 NaN 0 538.7702026367188 PEAK HCD FTMS 0 0 0 21347 18684.873046875 1 0 0 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))YLLPTF_ ENSG00000177192|ENST00000376649|PUS1;ENST00000543754.1_1_12:132425763-132428128:+|nuORF;nc|ENSG00000177192|Q9Y606-2|PUS1 26.34127834903884 0.38080804198364926 1 E{I|L}{I|L}{[VA]|[{I|L}G]}GPT 8 -1 24.963 0 0 2.321 0 0 129.98907905516268 162.05596338443596 292.04504243959866 0 0 0 0 0 0.9247425010840047 0 0.9049471895720985 0 E{I|L}{I|L}{[VA]|[{I|L}G]}GPT 2.321 - 334 + NaN NaN 171523.9 NaN 17374 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21351 86.204 NaN 238720 35 0 28681 0.261 + 29518 TYVTILPEL 9 58 524.7999065637616 1047.5852601943232 2 524.7999877929688 MULTI HCD FTMS 0 0 0 21347 91801.6015625 0.11256169212645926 20 -0.5360488891601562 4 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 36.12702656103203 0.08312389501731911 1 {I|L}{I|L}TV[{M(Oxidation (M))|F}V] 6 8 27.752 0 0 2.6491 0 0 357.18983350719986 0 357.18983350719986 0 12.18002299681771 0 0 0 1.3807196863200843 0 0 0 {I|L}{I|L}TV[{M(Oxidation (M))|F}V] 2.6491 - 101 NaN NaN 127728.1 NaN 17375 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21352 86.207 NaN 104630 35 0 35014 0.261 -1 ESTDRLMGKGQ 11 36 619.2948654956318 1236.5751780580636 2 619.2933959960938 MULTI HCD FTMS 0 0 0 21347 49048.53515625 0.8807192559001844 1 -0.0294647216796875 5 Oxidation (M) _ESTDRLM(Oxidation (M))GKGQ_ ENSG00000186716|ENST00000305877|BCR;ENST00000419722.6_1_22:23634729-23652357:+|nuORF;ENST00000471452.1_1_22:23637243-23644890:+|nuORF 2.282774691075616 0.408909192180357 1 N 1 -1 3.9794 0 0 0.32181 0 0 650.3190878254449 469.19480310611567 1119.5138909315606 0 0 0 0 0 0 0 0 0 N 0.32181 - 3 + NaN NaN 105004.4 NaN 17376 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21353 86.21 NaN 141700 35 0 31103 0.262 + -1 YLYGLEDM 8 40 510.2230592181391 1018.4315655030782 2 510.2232666015625 MULTI HCD FTMS 0 0 0 21347 45902.78125 0.1441157526300169 -15 0.3670501708984375 6 Oxidation (M) _YLYGLEDM(Oxidation (M))_ REV__ENSG00000167114|ENST00000300456|SLC27A4;REV__nc|ENSG00000167114|Q6P1M0-2|SLC27A4 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 103083.3 NaN 17377 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21354 86.214 NaN 173690 35 0 40021 0.261 + 975 AYFNFPEL 8 49 500.7423670082867 999.4701810833734 2 500.7424621582031 MULTI HCD FTMS 0 0 0 21347 42355.31640625 0.5710473877819119 -2 0.05913543701171875 7 Unmodified _AYFNFPEL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 26.88365393820708 0.39599352634412927 1 [YV]N 3 6 24.437 0 0 2.445 0 0 0 620.2735617808921 620.2735617808921 0.7255998297264199 0 0 0 0 0 1.6989700043360187 0 0 [YV]N 2.445 - 38 NaN NaN 101915.1 NaN 17378 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21355 86.217 NaN 72889 35 0 8527.2 0.261 -1 LPMVPIVAL 9 38 484.79612939280577 NaN 0 484.7959289550781 PEAK HCD FTMS 0 0 0 21347 26194.583984375 0.606768754322307 2 -0.058929443359375 8 Oxidation (M) _LPM(Oxidation (M))VPIVAL_ ENSG00000165392|ENST00000298139|WRN 14.581692164780916 0.22376707489839515 1 A 1 -1 11.99 0 0 1.2391 0 0 131.09486078411686 762.4219690506258 893.5168298347426 0 0 0 0 0 0.5 0 0 0 A 1.2391 + + 3 + NaN NaN 94396.5 NaN 17379 3974 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21357 86.222 NaN 1001300 35 0 47886 0.326 -1 0 122 575.8429950900887 1149.6714372469773 2 575.8428955078125 MULTI HCD FTMS 0 0 0 21356 803801.6875 0.4348193303239189 -14 0.357666015625 1 NaN NaN 1 D 1 -1 10.995 0 0 0.95635 0 0 61.0526138378894 970.546253256912 1031.5988670948013 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95635 - 126 + NaN NaN 241717.8 NaN 17380 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21358 86.226 NaN 561700 35 0 33924 0.261 -1 0 104 597.8564781435832 1193.6984033539663 2 597.8565063476562 MULTI HCD FTMS 0 0 0 21356 383043.75 0.6468943119912147 2 -0.0556182861328125 2 NaN NaN 1 ET 2 -1 9.4382 0 0 0.79067 0 0 132.22570508439713 828.3584376081568 960.584142692554 0 0 0 0 0 0 0 0.5994850021680094 0 ET 0.79067 - 57 + NaN NaN 169627.7 NaN 17381 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21359 86.23 NaN 574410 35 0 238390 0.261 -1 0 73 584.3564104122011 1166.698267891202 2 584.3565673828125 MULTI HCD FTMS 0 0 0 21356 119566.5234375 0.2414617035439781 -13 0.32480621337890625 3 NaN NaN 1 {M(Oxidation (M))|F}DQQ 4 -1 20.433 0 0 1.7514 0 0 130.271218185927 515.1934298150999 645.464648001027 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}DQQ 1.7514 - 403 + NaN NaN 175126.5 NaN 17382 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21360 86.233 NaN 323760 35 0 112060 0.261 + -1 KKVFIWHLV 9 61 606.3693490364988 1210.7241451397974 2 606.3694458007812 MULTI HCD FTMS 0 0 0 21356 48068.171875 0.20357333601909022 -1 0.0294647216796875 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KKVFIWHLV_ REV__ENST00000220562.8_1_8:28610970-28611177:+|nuORF 0.6014990680409731 0.3464572424761564 1 [Y{I|L}][VP][HK]D 7 -1 12.464 0 0 1.0295 0 0 0 355.25219624747245 355.25219624747245 6.9796193460306455 0 0 0 0 0 2 0 0 [Y{I|L}][VP][HK]D 1.0295 - 27 NaN NaN 128088.7 NaN 17383 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21361 86.236 NaN 761300 35 0 58458 0.261 -1 LSMEKKLDF 9 89 563.7951754410748 1125.5757979489495 2 563.7825317382812 MULTI HCD FTMS 0 0 0 21356 7864.0595703125 0.1046169848741826 3 -0.0818023681640625 5 Oxidation (M) _LSM(Oxidation (M))EKKLDF_ ENSG00000075043|ENST00000359125|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2 11.640296217721598 0.25978676193971967 1 VEQWV[PG]{M(Oxidation (M))|F} 8 -1 38.621 0 0 3.4312 0 0 165.10555377583108 0 165.10555377583108 0 -7.35863111416478 -7.35863111416478 0 0 0 0 0.3494850021680094 0 VEQWV[PG]{M(Oxidation (M))|F} 3.4312 - 4616 + NaN NaN 198412.8 NaN 17384 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21362 86.24 NaN 440500 35 0 15392 0.261 + 34839 YRNICIKVF 9 108 578.3207476859806 1154.626942438761 2 578.822265625 MULTI HCD FTMS 0 0 0 21356 62423.796875 0.4748042963296084 -1 0.0294647216796875 6 Unmodified _YRNICIKVF_ REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF 7.910154910731844 0.2910521888787154 1 {[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}{M(Oxidation (M))|F}[{I|L}T]V{M(Oxidation (M))|F} 9 -1 {[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}{M(Oxidation (M))|F}[{I|L}T]V + + 15.485 -9.4166 -0.95161 1.3411 1.3411 58.84 0 0 0 0 5.051499783199063 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}{M(Oxidation (M))|F}[{I|L}T]V{M(Oxidation (M))|F} 1.3411 - 980 + NaN NaN 147777.6 NaN 17385 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21363 86.243 NaN 117460 35 0 22085 0.261 -1 VMTEVLGIL 9 40 495.780437370278 989.546321807356 2 495.7804260253906 MULTI HCD FTMS 0 0 0 21356 44706.76171875 0.1531885331353948 12 -0.32062530517578125 7 Oxidation (M) _VM(Oxidation (M))TEVLGIL_ ENST00000459854.5_1_22:19442175-19463025:-|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6243 0 0 745.3689249213805 0 745.3689249213805 0 10.484550065040281 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6243 + + 16 NaN NaN 99420.9 NaN 17386 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21364 86.246 NaN 62156 35 0 14703 0.261 + 3804 EPEEQQYSIFS 11 38 452.8703651037304 NaN 0 452.8807678222656 PEAK HCD FTMS 0 0 0 21356 22434.248046875 0.6857692756383719 3 -0.0818023681640625 8 Unmodified _EPEEQQYSIFS_ REV__ENST00000590459.1_1_19:46027056-46027140:+|nuORF 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93369.1 NaN 17387 3975 21356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21366 86.251 NaN 499790 35 0 18784 0.327 -1 0 79 545.3168208601961 1088.6190887871921 2 545.3170166015625 MULTI HCD FTMS 0 0 0 21365 360992.15625 0.10013406918679453 62 -1.5305099487304688 1 NaN NaN 1 AQ{I|L} 3 -1 13.962 0 0 1.2826 0 0 282.16786602878636 491.23009630918307 773.3979623379694 0 0 0 0 0 0.5 0 0 0 AQ{I|L} 1.2826 - 130 + NaN NaN 154133.8 NaN 17388 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21367 86.256 NaN 564690 35 0 164630 0.261 + 9732 HYADVLGLLL 10 67 557.3189288580794 1112.6233047829587 2 557.319091796875 MULTI HCD FTMS 0 0 0 21365 253098.578125 0.6785357329084977 3 -0.0751495361328125 2 Unmodified _HYADVLGLLL_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 24.020572477871973 0.2864316864133941 1 {I|L}G{I|L}{I|L}{I|L} 5 5 45.191 0 0 4.0616 0 0 585.254686424025 0 585.254686424025 0 19.351649845072174 0 0 0 1.3252574989159953 0 0 0 + {I|L}G{I|L}{I|L}{I|L} 4.0616 + + 388 NaN NaN 170587.8 NaN 17389 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21368 86.259 NaN 921120 35 0 129310 0.261 + 29287 TYLQALPYF 9 85 558.2928562876363 1114.5711596420724 2 558.783935546875 MULTI HCD FTMS 0 0 0 21365 48722.82421875 0.5498902075000657 -3 0.08184051513671875 3 Unmodified _TYLQALPYF_ ENSG00000158864|ENST00000676972|NDUFS2;ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2 41.8396318013385 0.056899836730939755 1 [{I|L}T]{M(Oxidation (M))|F}[SG]A{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 6 + 45.128 0 0 4.0489 4.0489 80.784 0 0 0 9.91399007561462 -0.4009906763229054 -0.4009906763229054 1.7609125905568135 0 1.6237125054200234 1.3979400086720375 0.6549471895720984 0 [{I|L}T]{M(Oxidation (M))|F}[SG]A{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]A{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WR]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};M{I|L}{[QS]|[NT]}YT{M(Oxidation (M))|F}{I|L}{I|L};[YT][Q{I|L}]A{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[HK]{I|L}{I|L}M{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}ME{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS] 4.0489;3.891;3.7484;2.2017;1.9794;1.7395;1.4233;0.95881 -;-;-;-;-;-;-;- 958 NaN NaN 221865.9 NaN 17390 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21369 86.262 NaN 318320 35 0 29647 0.261 + 30706 VPFPFDETEL 10 86 597.2903106356531 1192.566068338106 2 597.2899780273438 MULTI HCD FTMS 0 0 0 21365 50865.20703125 0.4806740965488973 4 -0.08800506591796875 4 Unmodified _VPFPFDETEL_ ENSG00000176853|ENST00000334705|FAM91A1;ENST00000446265.3_1:149648157-149648721:+|nuORF;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869 24.020572477871973 0.2864316864133941 1 TE{I|L} 3 7 28.403 0 0 2.3817 0 0 831.3849964826187 0 831.3849964826187 0 22.91833743429045 0 0 0 0.25 0 0.6861818737241735 0 + TE{I|L} 2.3817 + + 57 NaN NaN 135437.8 NaN 17391 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21370 86.266 NaN 212170 35 0 27049 0.261 + 14786 LIHHQWVL 8 45 523.3005392002863 1044.5865254673724 2 523.3006591796875 MULTI HCD FTMS 0 0 0 21365 30322.068359375 0.3252691276461994 -4 0.11806488037109375 5 Unmodified _LIHHQWVL_ nc|ENSG00000293416|E5RG02|PRSS46P 14.581692164780916 0.48650662947107914 1 V{I|L} 2 6 25.969 0 0 2.4861 0 0 814.4243277392618 0 814.4243277392618 0 17.897131498072127 0 0 0 0.5 0 0 0 + V{I|L} 2.4861 + + 5 NaN NaN 111948.9 NaN 17392 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21371 86.269 NaN 187780 35 0 16589 0.261 + 34132 YNWTASSPVYG 11 53 622.7846218139765 NaN 0 622.7867431640625 PEAK HCD FTMS 0 0 0 21365 21942.673828125 0.4948761647682973 -3 0.08184051513671875 6 Unmodified _YNWTASSPVYG_ ENSG00000254521|ENST00000291707|SIGLEC12;nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 4.5288652416199255 0.32927305702295745 1 {I|L}{I|L}EDSE{I|L} 7 10 29.941 0 0 2.4077 0 0 166.0491008032257 275.10654627017817 441.1556470734039 0 0 0 0 0 0 0 0 0 {I|L}{I|L}EDSE{I|L} 2.4077 - 62 + NaN NaN 116164 NaN 17393 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21372 86.272 NaN 159700 35 0 10227 0.262 + 29889 VFDLAEPLF 9 51 525.7789822198027 1049.5434115064054 2 525.7793579101562 MULTI HCD FTMS 0 0 0 21365 20873.869140625 0.2571726617195465 4 -0.08800506591796875 7 Unmodified _VFDLAEPLF_ REV__ENSG00000095319|ENST00000372577|NUP188;REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF;REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 20.453626601364224 0.18364154288633264 1 E[{I|L}P]{M(Oxidation (M))|F} 4 -1 27.307 0 0 2.6018 0 0 545.2863636701187 0 545.2863636701187 0 15.880456295278407 0 0 0 1.3494850021680094 0 0 0 E[{I|L}P]{M(Oxidation (M))|F} 2.6018 + + 90 NaN NaN 118323.7 NaN 17394 3976 21365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21374 86.277 NaN 814170 35 0 85262 0.327 + 2761 DYATIFNNL 9 78 535.7611654334991 1069.507777933798 2 535.76171875 MULTI HCD FTMS 0 0 0 21373 241287.25 0.6823348509699677 -3 0.0850830078125 1 Unmodified _DYATIFNNL_ ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 149.91393105778798 8.917243180786556E-06 1 {[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NN{I|L} 9 0 + 108.14 0 0 10.111 10.111 92.611 0 0 0 19.187025700725442 8.023787536356593 8.023787536356593 8.023787536356593 0 2.7059771852360797 1.6989700043360187 1.4124379954164592 0.6139829889124311 + + {[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}N{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GGN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GG{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GGGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}NN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}N{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}NGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}GGN{I|L} 10.111;9.3606;9.2499;8.9799;7.9597;7.8189;6.6732;5.9229;5.8122;5.5422 +;-;-;-;-;-;-;-;-;- + 1933 NaN NaN 209561.3 NaN 17395 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21375 86.282 NaN 536480 35 0 24064 0.261 -1 0 102 578.3207476859806 1154.626942438761 2 578.3212890625 MULTI HCD FTMS 0 0 0 21373 153033.015625 0.5017703672410541 -12 0.2986907958984375 2 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{[TV]|[{I|L}S]} 5 -1 12.703 0 0 1.1002 0 0 479.301211092861 0 479.301211092861 0 -1.585390679490077 -1.585390679490077 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{[TV]|[{I|L}S]} 1.1002 - 837 + NaN NaN 167938.6 NaN 17396 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21376 86.285 NaN 81745 35 0 6115.6 0.264 -1 0 46 436.7746692619769 871.5347855907538 2 436.77490234375 MULTI HCD FTMS 0 0 0 21373 33980.8984375 0.02219888475274833 17 -0.45096588134765625 3 NaN NaN 1 Q 1 -1 9.6041 0 0 1.102 0 0 523.3429958952445 217.10817896060783 740.4511748558523 0 0 0 0 0 0.5 0 0 0 Q 1.102 - 7 + NaN NaN 95828.3 NaN 17397 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21377 86.289 NaN 178260 35 0 16978 0.261 -1 QGPFLYCSLM 10 54 608.2825850731155 1214.5506172130308 2 609.3487548828125 MULTI HCD FTMS 0 0 0 21373 23593.994140625 0.35349128729075024 4 -0.0979461669921875 4 Carbamidomethyl (C) _QGPFLYC(Carbamidomethyl (C))SLM_ CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45;nc|ENSG00000093009|O75419-3|CDC45 6.2057823575117 0.44245551207394906 1 AS{I|L} 3 -1 13.672 0 0 1.1257 0 0 130.08156988926208 810.2866304986936 940.3682003879558 0 0 0 0 0 0 0 0.5 0 AS{I|L} 1.1257 - 27 + NaN NaN 107930.4 NaN 17398 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21378 86.292 NaN 186680 35 0 30721 0.261 + 35390 YYDYNFINF 9 52 629.7746148377853 1257.5346767423705 2 630.2759399414062 MULTI HCD FTMS 0 0 0 21373 38185.69921875 0.3816433911520146 5 -0.1175384521484375 5 Unmodified _YYDYNFINF_ ENSG00000136378|ENST00000388820|ADAMTS7 36.506200033944 0.08138327636155518 1 {M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F} 4 5 46.186 0 0 3.6727 0 0 718.258474231499 0 718.258474231499 0 42.2062251842808 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F} 3.6727 + + 26 NaN NaN 119104.7 NaN 17399 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21379 86.295 NaN 105080 35 0 24882 0.262 + 12030 KHRHQTKK 8 39 531.8171214443505 1061.619689955501 2 531.817138671875 MULTI HCD FTMS 0 0 0 21373 14477.9443359375 0.09747894355955547 19 -0.4930877685546875 6 Unmodified _KHRHQTKK_ ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;SLC4A4|p.N220K|1|0.23|ENSG00000080493|chr4:71357117-71357117|C/A|missense_variant;SLC4A4|p.V1042Sfs*5|1|0.3|ENSG00000080493|chr4:71563811-71563812|-/A|frameshift_variant 2.0597508629832335 0.5389364538378849 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.4586 0 0 896.540800040265 0 896.540800040265 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4586 - 3 + NaN NaN 96602.9 NaN 17400 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21380 86.299 NaN 46718 35 0 4358.3 0.261 -1 FQRCQACWQ 9 35 642.2747192382812 NaN 0 642.2747192382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C) _FQRC(Carbamidomethyl (C))QAC(Carbamidomethyl (C))WQ_ ENSG00000258366|ENST00000360203|RTEL1;ENST00000496281.1_1_20:62323608-62327208:+|nuORF;ENST00000496816.5_1_20:62325699-62327208:+|nuORF;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88863.9 NaN 17401 3977 21373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21382 86.304 NaN 1096300 35 0 178270 0.327 + 31606 VYILAMVFDM 10 87 601.3032067421717 1200.5918605511433 2 601.3035888671875 MULTI HCD FTMS 0 0 0 21381 478680.09375 0.06166949813408836 9 -0.23882293701171875 1 Unmodified _VYILAMVFDM_ REV__ENSG00000170412|ENST00000392627|GPRC5C;REV__nc|ENSG00000170412|Q9NQ84-2|GPRC5C 34.10243960390752 0.1965851268881605 1 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 61.7 0 0 5.1391 5.1391 84.331 0 0 0 7.811121573686748 26.534759048170216 7.811121573686748 6.020599913279625 0 1.805462187404089 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDY{I|L}V;[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDVY{I|L};VY{I|L}[{M(Oxidation (M))|F}T]{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F}{I|L};[YV]EE{[CA]|SS}{I|L}YV{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DD{I|L}YV;[YV]EE{[CA]|SS}{I|L}Y{I|L}V;[YV]EE{[CA]|SS}{I|L}VY{I|L};[YV]EE{[CA]|SS}V{I|L}Y{I|L};[YV]EE{[CA]|SS}VY{I|L}{I|L} 5.1391;4.6376;4.5713;4.4304;4.0745;3.7383;3.573;3.5067;3.0062;2.9255 -;-;-;-;-;-;-;-;-;- 343 NaN NaN 261386.4 NaN 17402 3978 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21383 86.308 NaN 1402000 35 0 270160 0.261 + 15962 LPPWLQDPEL 10 76 604.3213348949031 1206.628116856606 2 604.3216552734375 MULTI HCD FTMS 0 0 0 21381 583020.75 0.8455278038496069 -2 0.052337646484375 2 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 82.5293158979368 0.0027392086780447054 1 [{I|L}P]WP{I|L}QDPE{I|L} 10 2 + 66.011 0 0 5.4707 5.4707 89.71 0 0 0 2.2184874961635614 17.973060725127965 2.2184874961635614 17.219161359540145 0 1.7302046884880937 0 0 0.805462187404089 [{I|L}P]WP{I|L}QDPE{I|L};[{I|L}P]WP{I|L}[AG]DPE{I|L};[YV]{[CA]|SS}{M(Oxidation (M))|F}{I|L}[H{I|L}]E{I|L} 5.4707;4.0436;2.2944 -;-;- 799 NaN NaN 295054.3 NaN 17403 3978 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21384 86.311 NaN 1300100 35 0 159750 0.261 + 12887 KYFSFPVFF 9 89 591.3052261931989 1180.5958994531977 2 591.3049926757812 MULTI HCD FTMS 0 0 0 21381 464290.625 0.43471531213316056 -4 0.11126708984375 3 Unmodified _KYFSFPVFF_ ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;nc|ENSG00000133059|Q6XUX3-3|DSTYK 82.5293158979368 0.005033931517079822 1 [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 88.497 0 0 7.4959 7.4959 88.216 0 0 0 5.255762612236907 16.478174818886373 5.255762612236907 5.255762612236907 0 3.1549471895720984 0 1.0114393726401687 0 + + [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][YV]{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][YV]{M(Oxidation (M))|F}GGV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.4959;7.0507;5.039;4.3612;3.5813 +;-;-;-;- + 1163 NaN NaN 277067.8 NaN 17404 3978 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21385 86.315 NaN 151690 35 0 21452 0.261 + -1 QIMARDGDIEL 11 46 638.81431138815 1275.6140698431 2 638.8146362304688 MULTI HCD FTMS 0 0 0 21381 60345.75390625 0.5932915805318955 -2 0.052337646484375 4 Oxidation (M) _QIM(Oxidation (M))ARDGDIEL_ REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1 16.565877749689598 0.3127433757948945 1 R[PG]ME{I|L} 6 -1 42.58 0 0 3.338 0 0 574.2393665998062 0 574.2393665998062 0 42.58024070117017 0 0 0 1.2302046884880937 0 0.4247425010840047 0 R[PG]ME{I|L} 3.338 - 24 NaN NaN 102652.3 NaN 17405 3978 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21386 86.318 NaN 456250 35 0 108940 0.261 -1 LYPVTVNMLF 10 66 606.8205422829603 1211.6265316327206 2 606.8207397460938 MULTI HCD FTMS 0 0 0 21381 86222.3671875 0.17349959019594255 -11 0.28922271728515625 5 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 22.736283301280096 0.29844449404982915 1 E 1 -1 3.9794 0 0 0.32843 0 0 183.15479226682766 896.4268892877561 1079.5816815545838 0 0 0 0 0 0 0 0 0 E 0.32843 - 38 + NaN NaN 153906.5 NaN 17406 3978 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21387 86.321 NaN 319080 35 0 52403 0.261 + 22323 QPISVDWCF 9 65 547.7523212519095 1093.490089570619 2 547.7516479492188 MULTI HCD FTMS 0 0 0 21381 46187.37109375 0.08247118020382603 -7 0.1832733154296875 6 Unmodified _QPISVDWCF_ ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A 34.40172386719151 0.0910440009062557 1 DWC{M(Oxidation (M))|F} 4 5 47.155 0 0 4.3123 0 0 524.294725486525 0 524.294725486525 0 26.220230592096243 0 0 0 1.3494850021680094 0 0.7742275032520141 0 + DWC{M(Oxidation (M))|F} 4.3123 + + 174 NaN NaN 144549.4 NaN 17407 3978 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21389 86.326 NaN 2178400 35 0 100770 0.327 + 394 AKFRKQERA 9 126 567.3304148038226 1132.646276674445 2 567.33056640625 MULTI HCD FTMS 0 0 0 21388 2591202.5 0.6699213007401974 -7 0.19321441650390625 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F} 1 8 11.594 0 0 1.0236 0 0 967.5671731361623 0 967.5671731361623 0 -3.16520051961181 -3.16520051961181 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0236 + + 675 + NaN NaN 399182.6 NaN 17408 3979 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21390 86.331 NaN 1051400 35 0 50430 0.261 -1 0 106 589.3430503555608 1176.6715477779214 2 589.3431396484375 MULTI HCD FTMS 0 0 0 21388 1295066.625 0.9448696899299674 2 -0.0489501953125 2 NaN NaN 1 Q 1 -1 10.485 0 0 0.89103 0 0 678.404398900809 367.1968420111515 1045.6012409119605 0 0 0 0 0 0.5 0 0 0 Q 0.89103 - 68 + NaN NaN 249155.1 NaN 17409 3979 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21391 86.334 NaN 132020 35 0 16235 0.261 + 6668 FPNATDYWTF 10 37 631.2792143976435 1260.543875862087 2 631.2796630859375 MULTI HCD FTMS 0 0 0 21388 21923.55859375 0.27229474933583525 -6 0.15699005126953125 3 Unmodified _FPNATDYWTF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 8.97624648632007 0.42715123575657504 1 YWT{M(Oxidation (M))|F} 4 6 33.443 0 0 2.6531 0 0 645.277635642775 0 645.277635642775 0 31.453650195120844 0 0 0 0.5 0 0 0 + YWT{M(Oxidation (M))|F} 2.6531 + + 15 NaN NaN 105574.3 NaN 17410 3979 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21393 86.339 NaN 1022900 35 0 97506 0.327 + 21981 QETGYFLLF 9 80 559.2825868261974 1116.5506207191947 2 559.2824096679688 MULTI HCD FTMS 0 0 0 21392 328583 0.895279597770881 -3 0.06185150146484375 1 Unmodified _QETGYFLLF_ ENST00000331920.10_1_9:98231408-98238427:-|nuORF 57.47134341890925 0.0211188941628804 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}T{I|L}{I|L}{M(Oxidation (M))|F} 9 5 + 59.569 0 0 5.3351 5.3351 83.964 0 0 0 4.3027839722898875 15.61506528157551 4.3027839722898875 4.3027839722898875 0 1.774227503252014 1.0457574905606752 0.9194451763165201 1.4604093769761874 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}T{I|L}{I|L}{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}QS{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F};[{I|L}T][MD]Y[KS]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y[KS]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QD]|[EN]|[WG]|[KD]|[RS]}V{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F};[{I|L}T][MD]Y{I|L}[KS]{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}QS{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WR]{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[KS]{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}[AG]S{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F} 5.3351;4.9497;4.7761;4.0334;3.8072;3.7138;3.5938;3.4532;3.4442;3.4036 -;-;-;-;-;-;-;-;-;- 873 NaN NaN 242795.4 NaN 17411 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21394 86.344 NaN 447400 35 0 137420 0.261 + 6708 FPPPEEFVF 9 71 554.7712650682614 1107.5279772033227 2 554.771240234375 MULTI HCD FTMS 0 0 0 21392 288335.375 0.9209509296664308 -2 0.03566741943359375 2 Unmodified _FPPPEEFVF_ ENSG00000214753|ENST00000301785|HNRNPUL2 21.74664581756881 0.17247014374749275 1 E{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 5 41.983 0 0 3.7907 0 0 567.2701283185562 0 567.2701283185562 0 36.49797211252192 0 0 0 1.305462187404089 0 0 0 + E{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.7907 + + 151 NaN NaN 144086 NaN 17412 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21395 86.347 NaN 948970 35 0 142020 0.261 + 515 APAEDPVFTIL 11 96 586.8142411961192 1171.6139294590382 2 586.8150024414062 MULTI HCD FTMS 0 0 0 21392 309949 0.5449264112922056 -2 0.03566741943359375 3 Unmodified _APAEDPVFTIL_ ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;nc|nan|Q9UFG5-2|C19orf25 47.594388314883695 0.09129669622414652 1 D[VP]{M(Oxidation (M))|F}T{I|L}{I|L} 7 4 58.83 0 0 5.0213 0 0 368.1690846173844 0 368.1690846173844 0 28.209026043729324 0 0 0 2.25 0 0.8494850021680094 0 + D[VP]{M(Oxidation (M))|F}T{I|L}{I|L} 5.0213 + + 909 NaN NaN 221207 NaN 17413 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21396 86.35 NaN 458390 35 0 28086 0.261 + 4363 EWIPLAWKW 9 79 614.8289705167044 1227.6433881002088 2 614.8291015625 MULTI HCD FTMS 0 0 0 21392 39246.2734375 0.45697092837674136 1 -0.03609466552734375 4 Unmodified _EWIPLAWKW_ ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2 37.07464296494664 0.07877380486334713 1 [YN]AWVY 6 7 32.775 0 0 2.6697 0 0 0 428.26244262585254 428.26244262585254 8.477795557774343 0 0 0 0 0 1.5228787452803376 0 0.5941876774005248 [YN]AWVY 2.6697 - 657 NaN NaN 175655.4 NaN 17414 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21397 86.354 NaN 127790 35 0 22349 0.263 -1 VPCAECGAR 9 44 510.2230592181391 1018.4315655030782 2 510.22308349609375 MULTI HCD FTMS 0 0 0 21392 74028.8125 0.23241986082801688 -9 0.21894073486328125 5 2 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))AEC(Carbamidomethyl (C))GAR_ ENST00000563255.1_1_16:65157712-65157874:-|nuORF 2.302733041254933 0.33356062215410776 1 W 1 -1 3.0989 0 0 0.30429 0 0 297.81329265327196 531.5335177057249 829.3468103589969 0 0 0 0 0 0 0 0 0 W 0.30429 - 9 + NaN NaN 103608.1 NaN 17415 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21398 86.357 NaN 266880 35 0 49342 0.261 + 22102 QIEHLQRKLG 10 55 611.3562999861853 1220.6980470391704 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21392 35038.0546875 0.4128629328361774 -2 0.03566741943359375 6 Unmodified _QIEHLQRKLG_ ENSG00000103549|ENST00000324685|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-3|RNF40;nc|ENSG00000103549|O75150-4|RNF40 1.214830529360525 0.46887341353674167 1 DR 2 9 10.969 0 0 0.89859 0 0 357.2827831354812 589.2610701752193 946.5438533107006 0 0 0 0 0 0 0 0 0 DR 0.89859 - 27 + NaN NaN 117752.2 NaN 17416 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21399 86.36 NaN 448030 35 0 31324 0.261 + 1480 AYSVLFETF 9 87 538.7693417050683 1075.5241304769365 2 538.7870483398438 MULTI HCD FTMS 0 0 0 21392 51844.38671875 0.4116370460355423 4 -0.11469268798828125 7 Unmodified _AYSVLFETF_ ENSG00000162104|ENST00000294016|ADCY9 64.23631603340823 0.01165516075559909 1 MY{I|L}{M(Oxidation (M))|F}TGPT 8 7 46.685 0 0 4.3407 0 0 0 162.0560244195922 162.0560244195922 20.22644583644839 0 0 0 0 1.3169015600442577 0 1.1936726795685342 0 MY{I|L}{M(Oxidation (M))|F}TGPT 4.3407 - 1352 + NaN NaN 167883.9 NaN 17417 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21400 86.364 NaN 101670 35 0 8542.1 0.261 + 31734 VYLLSSALI 9 38 489.7972367425237 977.5799205518474 2 489.7972412109375 MULTI HCD FTMS 0 0 0 21392 20435.779296875 0.018634250262183752 17 -0.46062469482421875 8 Unmodified _VYLLSSALI_ REV__ENSG00000095539|ENST00000210633|SEMA4G;REV__nc|ENSG00000095539|Q9NTN9|SEMA4G 23.1484247019978 0.1603590852062899 1 A{I|L}{I|L} 3 -1 34.253 0 0 3.5038 0 0 662.362596580275 0 662.362596580275 0 31.576447055154517 0 0 0 0.805462187404089 0 0 0 A{I|L}{I|L} 3.5038 + + 35 NaN NaN 103644.4 NaN 17418 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21401 86.367 NaN 134750 35 0 11977 0.261 + 33958 YLSTDKEGL 9 49 513.2609640117236 NaN 0 513.259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YLSTDKEGL_ REV__ENSG00000175166|ENST00000310118|PSMD2;REV__ENST00000459910.5_1_3:184017042-184019571:+|nuORF;REV__ENST00000487475.5_1_3:184017042-184019447:+|nuORF;REV__ENST00000492191.5_1_3:184017042-184018322:+|nuORF;REV__PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant 7.910154910731844 0.25691533546754686 1 Y[WP]{I|L}DA 6 -1 11.427 0 0 1.1153 0 0 114.08279104869844 162.05597864322502 276.13876969192347 0 0 0 0 0 0 0 0 0 Y[WP]{I|L}DA 1.1153 - 57 + NaN NaN 110126.5 NaN 17419 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21402 86.37 NaN 71129 35 0 4976.5 0.261 + 3273 EEDLSPVPYL 10 42 581.2853393554688 NaN 0 581.2853393554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _EEDLSPVPYL_ ENST00000452184.2_1_9:66457988-66459870:+|nuORF 6.2057823575117 0.3348729994311477 1 Y 1 9 11.99 0 0 1.0331 0 0 131.0915323062216 863.3752535455686 994.4667858517903 0 0 0 0 0 0.5 0 0 0 + Y 1.0331 + + 7 + NaN NaN 90037.3 NaN 17420 3980 21392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21404 86.375 NaN 1109600 35 0 56261 0.327 -1 0 102 575.8429950900887 1149.6714372469773 2 575.8428344726562 MULTI HCD FTMS 0 0 0 21403 1068943.5 0.578248719867369 -8 0.20594024658203125 1 NaN NaN 1 D 1 -1 10.995 0 0 0.95635 0 0 61.05260646126073 970.5433842641505 1031.5959907254112 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95635 - 124 + NaN NaN 256191.4 NaN 17421 3981 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21405 86.38 NaN 758460 35 0 26176 0.261 -1 0 123 597.8564781435832 1193.6984033539663 2 597.8563232421875 MULTI HCD FTMS 0 0 0 21403 393216.59375 0.6640744768122054 8 -0.2227020263671875 2 NaN NaN 1 W 1 -1 10.969 0 0 0.91892 0 0 989.6085728869726 0 989.6085728869726 0 1.6773532018394377 0 0 0 0 0 0 0 W 0.91892 - 491 + NaN NaN 210755.4 NaN 17422 3981 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21406 86.383 NaN 520780 35 0 250100 0.261 -1 0 76 584.3564104122011 1166.698267891202 2 584.3565673828125 MULTI HCD FTMS 0 0 0 21403 157529.203125 0.3181264174195946 -7 0.1830291748046875 3 NaN NaN 1 {M(Oxidation (M))|F}DQW 4 -1 11.402 0 0 0.9773 0 0 130.2659691624895 457.1711519830688 587.4371211455583 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}DQW 0.9773 - 45 + NaN NaN 162012.3 NaN 17423 3981 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21407 86.387 NaN 136800 35 0 12976 0.264 -1 0 49 404.12098086082074 806.2274087884415 2 404.1210632324219 MULTI HCD FTMS 0 0 0 21403 16121.021484375 0.25014163340976214 8 -0.2227020263671875 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 101670.8 NaN 17424 3981 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21408 86.39 NaN 48499 35 0 5584.2 0.261 + 31207 VVLRDPTLF 9 34 530.3113694523479 NaN 0 530.3117065429688 PEAK HCD FTMS 0 0 0 21403 17172.2109375 0.4725738895563966 1 -0.01959228515625 5 Unmodified _VVLRDPTLF_ ENSG00000117593|ENST00000649689|DARS2 2.0597508629832335 0.2852655770354268 1 T 1 8 6.9897 0 0 0.66027 0 0 679.3976584830176 275.1394442193969 954.5371027024146 0 0 0 0 0 0 0 0 0 + T 0.66027 + + 1 + NaN NaN 90913.1 NaN 17425 3981 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21410 86.395 NaN 316240 35 0 13199 0.327 -1 0 86 545.3168208601961 1088.6190887871921 2 545.3170166015625 MULTI HCD FTMS 0 0 0 21409 361042.625 0.10014806849735232 68 -1.7309417724609375 1 NaN NaN 1 QV 2 -1 12.123 0 0 1.1136 0 0 502.2979350780109 356.17710291080317 858.475037988814 0 0 0 0 0 0.805462187404089 0 0 0 QV 1.1136 - 102 + NaN NaN 133273 NaN 17426 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21411 86.399 NaN 368800 35 0 23622 0.261 -1 YNANVNLFCI 10 85 614.293389579463 1226.572226225726 2 614.7941284179688 MULTI HCD FTMS 0 0 0 21409 92915.3671875 0.7336368222405607 22 -0.5491867065429688 2 Carbamidomethyl (C) _YNANVNLFC(Carbamidomethyl (C))I_ ENSG00000078795|ENST00000508883|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2 10.073929032068715 0.4168838835836452 1 [YN]AWV[{M(Oxidation (M))|F}V]A{M(Oxidation (M))|F} 9 -1 36.092 0 0 2.9425 0 0 0 126.06072655215088 126.06072655215088 11.80446153598745 0 0 0 0 0 1.6989700043360187 0 0.2614393726401688 [YN]AWV[{M(Oxidation (M))|F}V]A{M(Oxidation (M))|F} 2.9425 - 1087 NaN NaN 141963.8 NaN 17427 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21412 86.403 NaN 232280 35 0 28423 0.262 + 16423 LSLQFEPVL 9 64 523.3005392002863 1044.5865254673724 2 523.3003540039062 MULTI HCD FTMS 0 0 0 21409 51866.09765625 0.5563749853444615 2 -0.0590057373046875 3 Unmodified _LSLQFEPVL_ ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L 26.268140514670165 0.13340543277302316 1 {M(Oxidation (M))|F}NPV{I|L} 5 5 48.686 0 0 4.6608 0 0 456.2588062970719 0 456.2588062970719 0 48.30702170131058 0 0 0 1.5 0 0 0.3252574989159953 {M(Oxidation (M))|F}NPV{I|L} 4.6608 - 124 NaN NaN 134350.6 NaN 17428 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21413 86.406 NaN 152390 35 0 30892 0.261 + 11571 IYSTLVTCVTF 11 50 623.8234168529087 1245.6322807726174 2 623.8239135742188 MULTI HCD FTMS 0 0 0 21409 32192.880859375 0.4589066294465019 -3 0.06854248046875 4 Unmodified _IYSTLVTCVTF_ ENSG00000164051|ENST00000395694|CCDC51;nc|ENSG00000164051|Q96ER9-2|CCDC51 47.594388314883695 0.09129669622414652 1 VTCVT{M(Oxidation (M))|F} 6 5 66.503 0 0 5.3389 0 0 577.3121205060562 0 577.3121205060562 0 59.513356515246514 0 0 0 1.9247425010840047 0 0.8494850021680094 0 + VTCVT{M(Oxidation (M))|F} 5.3389 + + 93 NaN NaN 104092.9 NaN 17429 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21414 86.41 NaN 89664 35 0 10257 0.263 -1 VMTEVLGIL 9 37 495.780437370278 989.546321807356 2 495.7807922363281 MULTI HCD FTMS 0 0 0 21409 38775.35546875 0.13286446160939705 19 -0.48909759521484375 5 Oxidation (M) _VM(Oxidation (M))TEVLGIL_ ENST00000459854.5_1_22:19442175-19463025:-|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6243 0 0 745.3679302877161 0 745.3679302877161 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6243 + + 7 NaN NaN 104720.7 NaN 17430 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21415 86.413 NaN 66682 35 0 7758.5 0.261 + 32476 WELPLQDEPL 10 35 620.3164961773201 NaN 0 620.3167114257812 PEAK HCD FTMS 0 0 0 21409 42206.84765625 0.8042194575212859 3 -0.08852386474609375 6 Unmodified _WELPLQDEPL_ ENSG00000198844|ENST00000361926|ARHGEF15 18.373094154950223 0.29381359703516324 1 QD 2 8 18.583 0 0 1.5003 0 0 638.3444048528839 354.16684900455317 992.5112538574372 0 0 0 0 0 1 0 0 0 + QD 1.5003 + + 10 + NaN NaN 98771.4 NaN 17431 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21416 86.416 NaN 145820 35 0 16544 0.262 + 28738 TSYILLPLE 9 43 524.7999065637616 1047.5852601943232 2 524.7998046875 MULTI HCD FTMS 0 0 0 21409 32350.208984375 0.039665912162182876 28 -0.6577911376953125 7 Unmodified _TSYILLPLE_ ENSG00000172995|ENST00000684406|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21 15.847184025352803 0.2234401846867398 1 {I|L}A 2 8 19.464 0 0 1.858 0 0 357.1897678803736 503.26413904361567 860.4539069239893 0 0 0 0 0 1 0 0 0 {I|L}A 1.858 - 60 + NaN NaN 110754.6 NaN 17432 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21417 86.42 NaN 56589 35 0 14326 0.262 + -1 WFTLCACYHR 10 37 452.8703651037304 NaN 0 452.8807678222656 PEAK HCD FTMS 0 0 0 21409 16906.939453125 0.5168107082441917 10 -0.27805328369140625 8 Carbamidomethyl (C) _WFTLC(Carbamidomethyl (C))ACYHR_ REV__ENSG00000100241|ENST00000380817|SBF1;REV__ENST00000399627.3_1_22:50906187-50913269:-|nuORF;REV__nc|ENSG00000100241|O95248-4|SBF1;REV__nc|ENSG00000100241|O95248|SBF1 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92691.1 NaN 17433 3982 21409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21419 86.424 NaN 744430 35 0 87560 0.327 + 2762 DYATIFNNL 9 73 535.7611654334991 1069.507777933798 2 535.7615966796875 MULTI HCD FTMS 0 0 0 21418 264703.5625 0.7485537087834399 3 -0.09506988525390625 1 Unmodified _DYATIFNNL_ ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 149.91393105778798 8.917243180786556E-06 1 {[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NN{I|L} 9 0 + 103.02 0 0 9.6327 9.6327 90.996 0 0 0 16.286735516907868 5.013487579716767 5.013487579716767 5.013487579716767 0 2.7134679910804405 1.5228787452803376 1.6593793813122062 0.3252574989159953 + + {[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}N{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GGN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GG{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GGGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}NN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}N{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}GGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}NGG{I|L} 9.6327;9.1639;8.7717;8.7717;7.9761;7.6107;5.9892;5.5204;5.1282;5.1282 +;-;-;-;-;-;-;-;-;- + 1112 NaN NaN 205050.8 NaN 17434 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21420 86.429 NaN 458030 35 0 19971 0.261 + 9719 HWINMKTIL 9 108 578.3207476859806 1154.626942438761 2 578.3212280273438 MULTI HCD FTMS 0 0 0 21418 200426.546875 0.657166047598267 -6 0.14708709716796875 2 Unmodified _HWINMKTIL_ ENSG00000196620|ENST00000338206|UGT2B15;ENSG00000197888|ENST00000317746|UGT2B17 5.230669730166228 0.3113646817964458 1 Q 1 9 7.3464 0 0 0.63625 0 0 634.3704249600486 389.17878137760005 1023.5492063376487 0 0 0 0 0 0 0 0 0.2742275032520141 Q 0.63625 - 646 + NaN NaN 159285.6 NaN 17435 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21421 86.432 NaN 491390 35 0 60426 0.261 + 32179 VYSTMLVFF 9 71 561.781129927386 1121.547706921572 2 561.7813110351562 MULTI HCD FTMS 0 0 0 21418 168425.4375 0.899796404396463 1 -0.02945709228515625 3 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ ENSG00000104613|ENST00000397977|INTS10 44.40701690623563 0.04511410083598184 1 {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 46.983 0 0 4.1891 0 0 597.2465077130875 0 597.2465077130875 0 39.508272069161734 0 0 0 1.805462187404089 0 0 0 + {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1891 + + 112 NaN NaN 155260.3 NaN 17436 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21422 86.436 NaN 130560 35 0 10789 0.261 + -1 QIMARDGDIEL 11 45 638.81431138815 1275.6140698431 2 639.3173217773438 MULTI HCD FTMS 0 0 0 21418 31166.087890625 0.5139148640503972 1 -0.02945709228515625 4 Oxidation (M) _QIM(Oxidation (M))ARDGDIEL_ REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1 8.444304893310646 0.381886813817475 1 ME{I|L} 3 -1 33.5 0 0 2.6262 0 0 884.4263974414565 0 884.4263974414565 0 20.300084529637985 0 0 0 0.8807196863200843 0 0 0 ME{I|L} 2.6262 - 31 NaN NaN 115758.2 NaN 17437 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21423 86.439 NaN 97547 35 0 13934 0.261 -1 MYPDLSELLM 10 43 622.2825669540123 NaN 0 622.2828979492188 PEAK HCD FTMS 0 0 0 21418 31247.5703125 0.32873952616074215 -15 0.3806610107421875 5 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 22.736283301280096 0.25846987392193327 1 {I|L}{I|L}ES[MN]{I|L} 7 -1 31.771 0 0 2.5569 0 0 165.0478905691121 274.08298669986567 439.13087726897777 0 0 0 0 0 1.305462187404089 0 0 0 {I|L}{I|L}ES[MN]{I|L} 2.5569 - 25 + NaN NaN 94129 NaN 17438 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21424 86.442 NaN 221600 35 0 23193 0.262 + 134 AEDVFIADF 9 62 513.7426712592171 1025.4707895852341 2 513.7427368164062 MULTI HCD FTMS 0 0 0 21418 71090.40625 0.47088280810871425 -2 0.04914093017578125 6 Unmodified _AEDVFIADF_ REV__ENSG00000134452|ENST00000362091|FBH1;REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1 46.020951573049366 0.037705236580089195 1 YG{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}AD{M(Oxidation (M))|F} 8 -1 60.126 0 0 5.8632 0 0 114.04966727937263 0 114.04966727937263 0 50.66183773464459 0 0 0 2 0 0 0.5 YG{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}AD{M(Oxidation (M))|F} 5.8632 - 89 + NaN NaN 128085.2 NaN 17439 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21425 86.446 NaN 44823 35 0 8314.4 0.261 -1 0 30 467.1018048105445 NaN 0 467.1020202636719 PEAK HCD FTMS 0 0 0 21418 40344.4765625 0.6321971190375498 -6 0.14708709716796875 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106923.5 NaN 17440 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21426 86.449 NaN 124430 35 0 15491 0.261 + 11572 IYSTLVTCVTF 11 44 623.8234168529087 1245.6322807726174 2 624.7611694335938 MULTI HCD FTMS 0 0 0 21418 21984.169921875 1 0 0 8 Unmodified _IYSTLVTCVTF_ ENSG00000164051|ENST00000395694|CCDC51;nc|ENSG00000164051|Q96ER9-2|CCDC51 10.799506525563784 0.36298595732910816 1 VTCV[{M(Oxidation (M))|F}T] 6 5 19.486 0 0 1.5644 0 0 577.3116367968007 0 577.3116367968007 0 12.496681312452797 0 0 0 0.4247425010840047 0 0 0 + VTCV[{M(Oxidation (M))|F}T] 1.5644 + + 35 + NaN NaN 106341 NaN 17441 3983 21418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21428 86.454 NaN 1161600 35 0 148630 0.327 + 12888 KYFSFPVFF 9 80 591.3052261931989 1180.5958994531977 2 591.3051147460938 MULTI HCD FTMS 0 0 0 21427 662314.25 0.6201248321974844 2 -0.06561279296875 1 Unmodified _KYFSFPVFF_ ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;nc|ENSG00000133059|Q6XUX3-3|DSTYK 92.65332237495696 0.004456439685314431 1 [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 92.264 0 0 7.8151 7.8151 89.712 0 0 0 7.786596949921218 16.478174818886373 7.786596949921218 7.786596949921218 0 3.1549471895720984 0 1.0994850021680094 0.28872548999643577 + + [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][YV]{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][YV]{M(Oxidation (M))|F}GGV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK][{I|L}V]{[YC]|[HE]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.8151;7.1555;4.4555;3.431;3.3908 +;-;-;-;- + 1451 NaN NaN 256036.6 NaN 17442 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21429 86.458 NaN 656050 35 0 124580 0.261 + 15963 LPPWLQDPEL 10 60 604.3213348949031 1206.628116856606 2 604.3214111328125 MULTI HCD FTMS 0 0 0 21427 338145.1875 0.4903961956228634 4 -0.12128448486328125 2 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 49.55428908609986 0.07941048486997417 1 {I|L}[Q{I|L}]DPE{I|L} 7 3 50.265 0 0 4.1658 0 0 380.1839771955094 0 380.1839771955094 0 19.937879028767824 0 0 0 1.4247425010840047 0 0 0.7302046884880937 {I|L}[Q{I|L}]DPE{I|L} 4.1658 - 113 NaN NaN 176543.5 NaN 17443 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21430 86.462 NaN 576990 35 0 82001 0.261 + 29031 TYFDLWIML 9 82 601.3032067421717 1200.5918605511433 2 601.3035888671875 MULTI HCD FTMS 0 0 0 21427 190515.578125 0.02454457631118999 15 -0.39145660400390625 3 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 16.942295170755138 0.21397866736869717 1 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 56.929 0 0 4.7417 4.7417 83.518 0 0 0 18.890138161124298 19.4812969097282 18.890138161124298 5.642714304385628 0 1.805462187404089 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}{[CP]|[EA]}[MT]YV{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDVY{I|L};[YV]{I|L}{[CP]|[EA]}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}M{I|L};[YV]{I|L}{[CP]|[EA]}[MT]VY{I|L};[YV]{I|L}{[CP]|[EA]}{[{M(Oxidation (M))|F}C]|[YS]}M{I|L}{I|L};[YV]{I|L}{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}P{M(Oxidation (M))|F}{I|L} 4.7417;4.2717;4.0931;3.6232;3.6232;3.4574;2.4008 -;-;-;-;-;-;- 365 NaN NaN 163619.1 NaN 17444 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21431 86.465 NaN 136750 35 0 9332.6 0.261 + -1 QIMARDGDIEL 11 52 638.81431138815 1275.6140698431 2 638.8143310546875 MULTI HCD FTMS 0 0 0 21427 45242.23046875 0.4448007139540096 4 -0.12128448486328125 4 Oxidation (M) _QIM(Oxidation (M))ARDGDIEL_ REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1 8.97624648632007 0.3788720818291249 1 ME{I|L} 3 -1 29.693 0 0 2.3277 0 0 884.4242420880875 0 884.4242420880875 0 22.245462655597095 0 0 0 0.5 0 0 0 ME{I|L} 2.3277 - 19 NaN NaN 113879.2 NaN 17445 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21432 86.469 NaN 68290 35 0 7272.5 0.261 + 33615 YISNEEVQIW 10 45 640.8141071638013 1279.6136613944025 2 640.814208984375 MULTI HCD FTMS 0 0 0 21427 32068.533203125 0.6495963298382162 1 -0.02951812744140625 5 Unmodified _YISNEEVQIW_ REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF 17.11289562659939 0.35104376501799556 1 {I|L}W 2 -1 23.443 0 0 1.8321 0 0 962.4391141305338 0 962.4391141305338 0 7.245462655597095 0 0 0 0.8494850021680094 0 0 0 {I|L}W 1.8321 + + 12 + NaN NaN 101645 NaN 17446 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21433 86.472 NaN 58536 35 0 4184.3 0.261 + 14205 LARRLRDLPE 10 37 619.8695925831167 1237.7246322330334 2 619.8699340820312 MULTI HCD FTMS 0 0 0 21427 26594.458984375 0.6471890424157988 -1 0.02945709228515625 6 Unmodified _LARRLRDLPE_ ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant 1.4819007175156935 0.4674597685733628 1 D 1 9 6.9897 0 0 0.56472 0 0 765.5064448324459 354.16791711978755 1119.6743619522335 0 0 0 0 0 0 0 0 0 + D 0.56472 + + 7 + NaN NaN 94210.7 NaN 17447 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21434 86.475 NaN 47435 35 0 7133.8 0.264 -1 0 29 436.7746692619769 871.5347855907538 2 436.7749328613281 MULTI HCD FTMS 0 0 0 21427 26160.208984375 0.017089820783286993 24 -0.5602493286132812 7 NaN NaN 1 N 1 -1 3.0989 0 0 0.35557 0 0 435.59217192063505 318.88645349674067 754.4786254173757 0 0 0 0 0 0 0 0 0 N 0.35557 - 3 + NaN NaN 94343.6 NaN 17448 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21435 86.479 NaN 93962 35 0 3840.3 0.261 + 18644 MYERPSCLY 9 44 581.2565075240312 NaN 0 581.2865600585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _MYERPSCLY_ ENST00000593197.1_1_19:57021649-57037314:+|nuORF 3.5964929083625545 0.27781873954207675 1 Y 1 8 6.9897 0 0 0.6023 0 0 131.03637947202202 863.3747652643186 994.4111447363407 0 0 0 0 0 0 0 0 0 + Y 0.6023 + + 1 + NaN NaN 101317.8 NaN 17449 3984 21427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21437 86.483 NaN 2775100 35 0 125380 0.327 + 395 AKFRKQERA 9 119 567.3304148038226 1132.646276674445 2 567.3305053710938 MULTI HCD FTMS 0 0 0 21436 3709159.75 0.9589544330762206 -1 0.02951812744140625 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 1 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 7 8 12.456 0 0 1.0998 0 0 286.14229842724694 0 286.14229842724694 0 1.0363077709416046 0 0 0 0.7134679910804405 0 0.7302046884880937 0 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 1.0998 - 485 NaN NaN 402773.6 NaN 17450 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21438 86.488 NaN 1063400 35 0 34847 0.261 -1 0 121 589.3430503555608 1176.6715477779214 2 589.3430786132812 MULTI HCD FTMS 0 0 0 21436 985459.25 0.7189827596600432 8 -0.2122039794921875 2 NaN NaN 1 W{M(Oxidation (M))|F}{M(Oxidation (M))|F}TWW 6 -1 25.571 0 0 2.1732 0 0 205.2506554288555 0 205.2506554288555 0 12.612300306688482 0 0 0 0 0 0.5752574989159953 0 W{M(Oxidation (M))|F}{M(Oxidation (M))|F}TWW 2.1732 - 868 + NaN NaN 245403.9 NaN 17451 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21439 86.491 NaN 665480 35 0 146920 0.261 + 22324 QPISVDWCF 9 73 547.7523212519095 1093.490089570619 2 547.7527465820312 MULTI HCD FTMS 0 0 0 21436 560042.5625 1 0 0 3 Unmodified _QPISVDWCF_ ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A 78.7280429016045 0.006263961847259105 1 HSVDWC{M(Oxidation (M))|F} 7 3 58.933 0 0 5.3894 0 0 201.1539822481564 0 201.1539822481564 0 49.15623546046113 0 0 0 2.274227503252014 0 0 0 HSVDWC{M(Oxidation (M))|F} 5.3894 - 238 + NaN NaN 184627 NaN 17452 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21440 86.495 NaN 1153200 35 0 334800 0.261 + 28406 TPFLYDLVM 9 66 557.7783515620231 1113.542150190846 2 557.7783203125 MULTI HCD FTMS 0 0 0 21436 697649.3125 0.4764621311602204 -4 0.10811614990234375 4 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 92.8221339359638 0.0044520161739443126 1 [YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F} 9 4 + 67.885 0 0 6.0963 6.0963 86.906 0 0 0 2.7865969499212184 60.895709633532746 2.7865969499212184 8.284634594678266 0 1 0 1.2302046884880937 0 [YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YT]{I|L}D{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YE]{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};[YT]{I|L}PE[{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}V]EP{I|L}V{M(Oxidation (M))|F};[YT]{I|L}PE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{M(Oxidation (M))|F} 6.0963;5.3524;4.4989;4.2338;3.8524;3.6421 -;-;-;-;-;- 546 NaN NaN 249539.8 NaN 17453 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21441 86.498 NaN 822240 35 0 123490 0.261 + 17339 LYPVTVNMLF 10 63 606.8205422829603 1211.6265316327206 2 606.8204956054688 MULTI HCD FTMS 0 0 0 21436 418485.59375 0.8420909954912121 -4 0.10811614990234375 5 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 60.07390631473393 0.04115296186411585 1 [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 0 + 77.145 0 0 6.3671 6.3671 92.805 0 0 0 22.498774732165998 77.14509699961575 22.498774732165998 35.74031267727719 0 2.004432191740108 1.5228787452803376 0.4247425010840047 0 + + [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[VP][Y{I|L}]TVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.3671;3.4173 +;- + 142 NaN NaN 203385.1 NaN 17454 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21442 86.501 NaN 347910 35 0 122420 0.261 + 6709 FPPPEEFVF 9 55 554.7712650682614 1107.5279772033227 2 554.7713623046875 MULTI HCD FTMS 0 0 0 21436 192156.515625 0.6137530703830766 3 -0.091766357421875 6 Unmodified _FPPPEEFVF_ ENSG00000214753|ENST00000301785|HNRNPUL2 21.74664581756881 0.17247014374749275 1 E{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 5 42.295 0 0 3.8189 0 0 567.26664931465 0 567.26664931465 0 27.602131414518922 0 0 0 1.4247425010840047 0 0 0 + E{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.8189 + + 56 NaN NaN 132269.7 NaN 17455 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21443 86.505 NaN 2269800 35 0 477020 0.261 + 18902 NAFEDSFSSIL 11 102 615.2882252766974 1228.5618976201947 2 615.2870483398438 MULTI HCD FTMS 0 0 0 21436 785842.25 0.02867649334170398 -7 0.17987823486328125 7 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 154.0365246041356 5.0197829675760664E-05 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 109.56 0 0 8.918 8.918 93.858 0 0 0 9.115010663094225 70.8525514182544 9.115010663094225 10.032059605518299 0 3.4604093769761874 0 1.9035984316004222 0.3252574989159953 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]D{[QG]|[NA]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}E[C(Carbamidomethyl (C))S]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S[C(Carbamidomethyl (C))S]E{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]DT[NG]{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{I|L}C[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]SS{I|L}{I|L} 8.918;8.1014;6.9027;6.2492;6.067;5.9003;5.7867;5.3105;5.2171;4.559 +;-;-;-;-;-;-;-;-;- + 3972 NaN NaN 436385.5 NaN 17456 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21444 86.508 NaN 199140 35 0 25028 0.261 + 11573 IYSTLVTCVTF 11 49 623.8234168529087 1245.6322807726174 2 624.3245239257812 MULTI HCD FTMS 0 0 0 21436 38341.046875 0.8343259928550275 2 -0.0589447021484375 8 Unmodified _IYSTLVTCVTF_ ENSG00000164051|ENST00000395694|CCDC51;nc|ENSG00000164051|Q96ER9-2|CCDC51 23.789781309258295 0.24980126723476595 1 VT{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}T] 6 5 23.484 0 0 1.8853 0 0 577.3121646610924 0 577.3121646610924 0 1.4570272268741817 0 0 0 1.620371515030528 0 0 0 + VT{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}T] 1.8853 + + 51 + NaN NaN 115629.6 NaN 17457 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21445 86.511 NaN 118970 35 0 15253 0.262 + 27539 TAAFPVPDVF 10 43 532.2766134753896 1062.538674017579 2 532.2765502929688 MULTI HCD FTMS 0 0 0 21436 58321 1 0 0 9 Unmodified _TAAFPVPDVF_ nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93|PALLD 13.042465956692817 0.38911719078024076 1 {M(Oxidation (M))|F} 1 9 20.485 0 0 1.9279 0 0 897.4599214314447 0 897.4599214314447 0 10.30726239543597 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.9279 + + 11 + NaN NaN 104671.7 NaN 17458 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21446 86.515 NaN 128210 35 0 15058 0.261 + 15949 LPPPADLEIL 10 59 539.3136949829009 1076.6128370326016 2 539.7724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _LPPPADLEIL_ ENSG00000166329|ENST00000299415|CCDC182 6.723162845929126 0.4397169348982109 1 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 3 9 16.127 0 0 1.4979 0 0 0 699.4279059625422 699.4279059625422 1.0649218306807047 0 0 0 0 0 0 0.3054621874040891 0.2614393726401688 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 1.4979 - 57 NaN NaN 99629.3 NaN 17459 3985 21436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21448 86.519 NaN 1386700 35 0 74716 0.327 -1 0 120 575.8429950900887 1149.6714372469773 2 575.8428955078125 MULTI HCD FTMS 0 0 0 21447 1458229.5 0.7888343412423889 -3 0.09506988525390625 1 NaN NaN 1 D 1 -1 10.995 0 0 0.95635 0 0 61.05274451995849 970.5441124016388 1031.5968569215972 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95635 - 184 + NaN NaN 293502.1 NaN 17460 3986 21447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21449 86.524 NaN 1131100 35 0 146790 0.261 + 516 APAEDPVFTIL 11 118 586.8142411961192 1171.6139294590382 2 586.8143310546875 MULTI HCD FTMS 0 0 0 21447 412867.28125 0.7258687265051097 4 -0.11132049560546875 2 Unmodified _APAEDPVFTIL_ ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;nc|nan|Q9UFG5-2|C19orf25 40.23920728925047 0.13540949088500095 1 {M(Oxidation (M))|F}T{I|L}{I|L} 4 7 55.433 0 0 4.7313 0 0 679.3187453973524 0 679.3187453973524 0 27.08379242527066 0 0 0 1.5 0 0.8494850021680094 0 + {M(Oxidation (M))|F}T{I|L}{I|L} 4.7313 + + 6592 NaN NaN 254683.1 NaN 17461 3986 21447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21450 86.527 NaN 194170 35 0 40612 0.261 -1 PCGLQREC 8 54 510.2230592181391 1018.4315655030782 2 510.22314453125 MULTI HCD FTMS 0 0 0 21447 124444.375 0.3907038805779783 -3 0.09506988525390625 3 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))GLQREC(Carbamidomethyl (C))_ ENSG00000092140|ENST00000206595|G2E3;ENST00000544007.5_1_14:31028384-31077115:+|nuORF;G2E3|p.S438Ifs*16|1|0.33|ENSG00000092140|chr14:30605805-30605806|-/ATCAATTCTAACCAGC|frameshift_variant 2.8892196856762586 0.5377058178582064 1 C(Carbamidomethyl (C)){[WT]|[RM]} 3 -1 6.5668 0 0 0.6448 0 0 553.2482086283777 0 553.2482086283777 0 6.5668186536885305 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){[WT]|[RM]} 0.6448 - 17 + NaN NaN 107167.5 NaN 17462 3986 21447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21451 86.531 NaN 398780 35 0 72082 0.261 -1 VYSTMLVFF 9 68 561.781129927386 1121.547706921572 2 561.7954711914062 MULTI HCD FTMS 0 0 0 21447 53754.69921875 0.28717921588563255 4 -0.11132049560546875 4 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ ENSG00000104613|ENST00000397977|INTS10 36.04419817259434 0.08350412372117409 1 E[HC]{I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 39.549 0 0 3.5262 0 0 228.15432936836095 0 228.15432936836095 0 28.746593453864463 0 0 0 1.9361818737241734 0 0.28872548999643577 0 E[HC]{I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.5262 - 303 NaN NaN 135700.7 NaN 17463 3986 21447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21452 86.534 NaN 110280 35 0 10656 0.261 + 6669 FPNATDYWTF 10 51 631.2792143976435 1260.543875862087 2 631.2791748046875 MULTI HCD FTMS 0 0 0 21447 59058.34765625 0.7335158616006655 1 -0.02285003662109375 5 Unmodified _FPNATDYWTF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 16.565877749689598 0.3561603856738253 1 WT{M(Oxidation (M))|F} 3 7 40.005 0 0 3.1736 0 0 808.339159080275 0 808.339159080275 0 34.5205343810445 0 0 0 1 0 0.3807196863200844 0 + WT{M(Oxidation (M))|F} 3.1736 + + 17 NaN NaN 100899.4 NaN 17464 3986 21447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21453 86.537 NaN 112460 35 0 7237 0.262 + 12546 KSKYANLVQ 9 49 525.800411373384 1049.586269813568 2 525.8011474609375 MULTI HCD FTMS 0 0 0 21447 17662.875 0.2173315334265586 -5 0.1442108154296875 6 Unmodified _KSKYANLVQ_ REV__ENSG00000103021|ENST00000219299|CCDC113;REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4753 0 0 884.5074256746992 0 884.5074256746992 0 7.525749891599531 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4753 - 24 + NaN NaN 96572.2 NaN 17465 3986 21447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21455 86.542 NaN 499910 35 0 16978 0.327 -1 0 104 597.8564781435832 1193.6984033539663 2 597.8564453125 MULTI HCD FTMS 0 0 0 21454 307800.0625 0.5198208028764087 14 -0.3416290283203125 1 NaN NaN 1 WT{M(Oxidation (M))|F}Y[{I|L}T] 6 -1 20.666 0 0 1.7312 0 0 364.2969273791601 0 364.2969273791601 0 3.6709124234503996 0 0 0 0 0 0.48020468848809383 0 WT{M(Oxidation (M))|F}Y[{I|L}T] 1.7312 - 563 + NaN NaN 182240 NaN 17466 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21456 86.547 NaN 773580 35 0 68681 0.261 + -1 NAFMFFSQPF 10 78 626.2790098975455 1250.543466861891 2 626.27880859375 MULTI HCD FTMS 0 0 0 21454 367102.65625 0.11459298169108643 -5 0.14746856689453125 2 Oxidation (M) _NAFM(Oxidation (M))FFSQPF_ REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF 17.11289562659939 0.35104376501799556 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 N{[MS]|[{M(Oxidation (M))|F}A]} + + 73.356 0.29046 0.082947 5.8659 5.8659 63.094 0 0 0 31.81392993565167 0 0 0 0 2.829689690656103 0 1.0189301784845295 0 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 5.8659 - 840 + NaN NaN 218406.9 NaN 17467 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21457 86.55 NaN 672440 35 0 327560 0.261 -1 0 78 584.3564104122011 1166.698267891202 2 584.3565063476562 MULTI HCD FTMS 0 0 0 21454 168533.46875 0.3403492658195639 -1 0.02285003662109375 3 NaN NaN 1 [{I|L}P]A 3 -1 6.9627 0 0 0.59679 0 0 0 882.4876803033811 882.4876803033811 2.806037127601968 0 0 0 0 0 0 0 0 [{I|L}P]A 0.59679 - 87 + NaN NaN 199841.5 NaN 17468 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21458 86.554 NaN 309590 35 0 28096 0.261 -1 0 83 545.3168208601961 1088.6190887871921 2 545.31689453125 MULTI HCD FTMS 0 0 0 21454 158942.90625 0.04408849249390774 73 -1.8495254516601562 4 NaN NaN 1 Y{I|L}T 3 -1 18.962 0 0 1.7418 0 0 220.13095186532388 488.25470911197505 708.3856609772989 0 0 0 0 0 0.3494850021680094 0 0.3494850021680094 0 Y{I|L}T 1.7418 - 124 + NaN NaN 135459.5 NaN 17469 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21459 86.557 NaN 430670 35 0 47614 0.261 + -1 MASMVMAMRC 10 91 594.246075955681 1186.477598978162 2 595.250732421875 MULTI HCD FTMS 0 0 0 21454 133080 0.495973973292437 -2 0.0589447021484375 5 Carbamidomethyl (C) _MASMVMAMRC(Carbamidomethyl (C))_ REV__ENST00000431294.5_1_1:63786852-63789241:-|nuORF 13.90604991867851 0.3810395177745597 1 [YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}MTSAG{[CP]|[EA]} 11 -1 + 71.216 0 0 6.0023 6.0023 89.159 0 0 0 11.077735547020879 7.367585652254178 7.367585652254178 10.823198202617974 0 0.6747425010840047 1.6989700043360187 1.0752574989159953 0.3494850021680094 [YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}MTSAG{[CP]|[EA]};[YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}MTSQ{[CP]|[EA]};Q{M(Oxidation (M))|F}ASTM{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YG]G{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}MTSAG{[CP]|[EA]};Q{M(Oxidation (M))|F}AST{M(Oxidation (M))|F}[WD]W;{[DS]|[MA]|[CV]|TT}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F}TSAG{[CP]|[EA]};[YN]AST{M(Oxidation (M))|F}T[C(Carbamidomethyl (C))H]S;[YN]AST{M(Oxidation (M))|F}D{I|L}G{[CP]|[EA]};Q{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}TSAGDS;[YN]ASTE[{M(Oxidation (M))|F}V]G{[CP]|[EA]} 6.0023;5.0901;5.0686;4.7518;4.6461;4.3315;4.2025;4.1853;4.1235;3.9864 -;-;-;-;-;-;-;-;-;- 4229 NaN NaN 144030.1 NaN 17470 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21460 86.56 NaN 667180 35 0 152800 0.261 -1 SNRMHCCDML 10 68 641.7436269031326 1281.4727008730652 2 641.7431640625 MULTI HCD FTMS 0 0 0 21454 162656.390625 0.13205074245180343 -5 0.14746856689453125 6 Carbamidomethyl (C),Oxidation (M) _SNRM(Oxidation (M))HC(Carbamidomethyl (C))CDML_ nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F}SS{I|L}{I|L} 5 -1 24.016 0 0 1.8741 0 0 716.1657582013687 0 716.1657582013687 0 -1.3502935127679194 -1.3502935127679194 0 0 0.4247425010840047 0 0.3807196863200844 0 {M(Oxidation (M))|F}SS{I|L}{I|L} 1.8741 - 162 NaN NaN 196988.1 NaN 17471 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21461 86.564 NaN 431550 35 0 48782 0.261 + -1 LSTCCYLCFT 10 64 634.2616167544104 1266.5086805756207 2 634.2612915039062 MULTI HCD FTMS 0 0 0 21454 93503.625 0.1156481942072241 -5 0.14746856689453125 7 2 Carbamidomethyl (C) _LSTC(Carbamidomethyl (C))C(Carbamidomethyl (C))YLCFT_ REV__chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4 6.2057823575117 0.44245551207394906 1 {[QG]|[NA]}{M(Oxidation (M))|F}ED[W{I|L}]D 8 -1 42.646 0 0 3.3672 0 0 0 273.08698450260005 273.08698450260005 23.182547277579353 0 0 0 0 1.1694451763165201 0 1.0941876774005248 0 {[QG]|[NA]}{M(Oxidation (M))|F}ED[W{I|L}]D 3.3672 - 214 + NaN NaN 168251.2 NaN 17472 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21462 86.567 NaN 584110 35 0 100290 0.261 + 27429 SYVDLVEGLHD 11 72 623.8011571336598 1245.5877613341195 2 623.801025390625 MULTI HCD FTMS 0 0 0 21454 92052.4140625 0.09053967713689673 -5 0.14746856689453125 8 Unmodified _SYVDLVEGLHD_ ENSG00000115661|ENST00000396738|STK16;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENST00000496443.5_1_2:220111358-220112169:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF 4.897010918128616 0.3974440401582579 1 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 10 43.853 0 0 3.5207 0 0 148.12125280937454 0 148.12125280937454 0 8.26992174712749 0 0 0 0 0 1.3252574989159953 0.3054621874040891 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 3.5207 - 740 + NaN NaN 173830.2 NaN 17473 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21463 86.57 NaN 59237 35 0 12300 0.264 + 20426 PAEHHSDL 8 39 453.20975734939833 NaN 0 453.2102966308594 PEAK HCD FTMS 0 0 0 21454 16583.498046875 0.4338947506342786 4 -0.10791778564453125 9 Unmodified _PAEHHSDL_ REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92488.4 NaN 17474 3987 21454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21465 86.575 NaN 646420 35 0 34593 0.327 -1 VLFCKRSFV 9 103 578.3207476859806 1154.626942438761 2 578.321044921875 MULTI HCD FTMS 0 0 0 21464 214660.53125 0.7038369671902116 -1 0.0328216552734375 1 Carbamidomethyl (C) _VLFC(Carbamidomethyl (C))KRSFV_ ENST00000322090.7_1_7:56067418-56067571:+|nuORF 4.3292370932331545 0.3181982124262546 1 {I|L}VE 3 -1 16.198 0 0 1.4029 0 0 131.13590030289066 679.2739988123209 810.4098991152116 0 0 0 0 0 0 0 0 0 {I|L}VE 1.4029 - 600 + NaN NaN 192238 NaN 17475 3988 21464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21466 86.58 NaN 280930 35 0 22101 0.261 + 5473 FIQRSLSSF 9 65 542.7921813973345 NaN 0 542.781982421875 PEAK HCD FTMS 0 0 0 21464 12043.6611328125 0.35989587899135494 -2 0.05567169189453125 2 Unmodified _FIQRSLSSF_ ENST00000291574.8_1_21:45451998-45457698:+|nuORF 24.67388899826682 0.15602608049614122 1 QEES{I|L}S 6 6 36.732 0 0 3.3899 0 0 245.18212783197515 162.0562685602172 407.2383963921924 0 0 0 0 0 1 0 0.6861818737241735 0 QEES{I|L}S 3.3899 - 199 + NaN NaN 123094.5 NaN 17476 3988 21464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21467 86.583 NaN 171450 35 0 15116 0.261 + 15228 LNYCQKESWC 10 47 637.2702146906556 1272.5258764481111 2 637.27001953125 MULTI HCD FTMS 0 0 0 21464 77436.1875 0.253660403154901 -3 0.091766357421875 3 Unmodified _LNYCQKESWC_ ENSG00000174871|ENST00000311445|CNIH2;ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF 3.2813086475875832 0.45793521633868084 1 {M(Oxidation (M))|F}MD{[NV]|[RG]}E[WQ] 8 8 32.154 0 0 2.5267 0 0 205.08661971158614 0 205.08661971158614 0 26.66895006820745 0 0 0 0.8252574989159953 0 0 0 {M(Oxidation (M))|F}MD{[NV]|[RG]}E[WQ] 2.5267 - 67 + NaN NaN 112564.3 NaN 17477 3988 21464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21468 86.586 NaN 209850 35 0 21222 0.264 -1 MVLAAPLLL 9 40 491.8038563968643 981.5931598605287 2 491.80389404296875 MULTI HCD FTMS 0 0 0 21464 39083.73046875 0.3561632790799747 -1 0.0328216552734375 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MVLAAPLLL_ ENSG00000135414|ENST00000257868|GDF11 14.581692164780916 0.23437375358055648 1 {I|L}{I|L} 2 -1 25.217 0 0 2.5689 0 0 737.4152128999916 0 737.4152128999916 0 22.284700126913393 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.5689 + + 13 NaN NaN 111036.3 NaN 17478 3988 21464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21469 86.59 NaN 83315 35 0 8356.7 0.261 + 25314 SCETMLCPN 9 38 499.19322951723694 996.3719061012739 2 499.1933288574219 MULTI HCD FTMS 0 0 0 21464 29650.0078125 0.2659895214790056 -1 0.0328216552734375 5 Unmodified _SCETMLCPN_ REV__ENSG00000137090|ENST00000382276|DMRT1;REV__ENST00000564322.1_1_9:841703-894198:+|nuORF;REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1 1.844237919475145 0.33703635659052655 1 VE 2 -1 10.969 0 0 1.1009 0 0 233.0445878413114 532.1880842861686 765.2326721274801 0 0 0 0 0 0 0 0 0 VE 1.1009 - 5 + NaN NaN 85306.1 NaN 17479 3988 21464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21470 86.593 NaN 117210 35 0 6417.9 0.261 + -1 VMLIMSLVL 9 56 525.800411373384 1049.586269813568 2 525.7996215820312 MULTI HCD FTMS 0 0 0 21464 25666.306640625 0.31580916354802346 -3 0.091766357421875 6 2 Oxidation (M) _VM(Oxidation (M))LIM(Oxidation (M))SLVL_ REV__ENSG00000070214|ENST00000374720|SLC44A1;REV__nc|ENSG00000070214|Q8WWI5-2|SLC44A1;REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4753 0 0 884.5075477450117 0 884.5075477450117 0 2.2969624387961574 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4753 + + 68 + NaN NaN 109505.8 NaN 17480 3988 21464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21472 86.598 NaN 13955000 35 0 3183900 0.327 + 18903 NAFEDSFSSIL 11 101 615.2882252766974 1228.5618976201947 2 615.2886352539062 MULTI HCD FTMS 0 0 0 21471 21553702 0.7865250206285952 -3 0.0784912109375 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 190.03143192339053 2.41502504821315E-14 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 123.29 0 0 10.035 10.035 97.331 0 0 0 18.48166564977896 59.42858277244898 18.48166564977896 24.61015528703888 0 3.524227503252014 0 1.9749073637206092 1.2619229975844686 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}E[C(Carbamidomethyl (C))S]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}TDD{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]E[NG]S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]D{[QG]|[NA]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{M(Oxidation (M))|F}SD{[CA]|SS}SS{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MG]|[TS]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))E]|[WC]}SS{I|L}{I|L} 10.035;8.0323;7.6637;7.5676;7.5587;6.9296;6.828;6.7624;6.6266;6.5269 +;-;-;-;-;-;-;-;-;- + 5245 NaN NaN 855790.4 NaN 17481 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21473 86.602 NaN 1891100 35 0 153500 0.261 + 19728 NYASTFTWW 9 120 588.2615884264916 1174.508623919783 2 588.2615356445312 MULTI HCD FTMS 0 0 0 21471 1443201.125 1 0 0 2 Unmodified _NYASTFTWW_ ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 240.4849816232388 4.7247870992293413E-32 1 [YN]AST{M(Oxidation (M))|F}TWW 9 0 + 126.34 0 0 10.757 10.757 97.486 0 0 0 18.66840354357626 16.478174818886373 16.478174818886373 22.473698703943057 0 3.1989700043360187 1.3979400086720375 1.8169015600442577 1.6619543704721593 + + [YN]AST{M(Oxidation (M))|F}TWW;[YN]ASTT{M(Oxidation (M))|F}WW;[YN]AS{M(Oxidation (M))|F}TTWW;[YG]QST{M(Oxidation (M))|F}TWW;{[CT]|[{M(Oxidation (M))|F}G]}{[DA]|[EG]}T{M(Oxidation (M))|F}TSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YG]GAST{M(Oxidation (M))|F}TWW;{[CT]|[{M(Oxidation (M))|F}G]}WT{M(Oxidation (M))|F}TS[SG]W;[YN]AST{M(Oxidation (M))|F}[DV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}[SG]ST{M(Oxidation (M))|F}TWW;[YG]QSTT{M(Oxidation (M))|F}WW 10.757;8.8435;8.6018;8.372;8.0024;7.8954;6.8366;6.6433;6.5981;6.4585 +;-;-;-;-;-;-;-;-;- + 26323 NaN NaN 364641.5 NaN 17482 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21474 86.606 NaN 505020 35 0 41994 0.261 -1 LCLPPRQLW 9 83 591.8285288407607 1181.6425047483212 2 591.305419921875 MULTI HCD FTMS 0 0 0 21471 30915.1953125 0.717269892045502 -1 0.02281951904296875 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))LPPRQLW_ ENST00000525268.2_1_11:77612536-77632479:-|nuORF 18.13498045792455 0.20367413111508956 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 3 -1 22.051 0 0 1.8662 0 0 0 792.4244926235743 792.4244926235743 6.187718690714375 0 0 0 0 0 1.6989700043360187 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 1.8662 + + 536 NaN NaN 151564.2 NaN 17483 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21475 86.609 NaN 313580 35 0 36508 0.261 + 29032 TYFDLWIML 9 55 601.3032067421717 1200.5918605511433 2 601.303466796875 MULTI HCD FTMS 0 0 0 21471 257694.375 0.03319938093462355 20 -0.43860626220703125 4 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 21.74664581756881 0.17247014374749275 1 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 51.7 0 0 4.3062 4.3062 80.278 0 0 0 0.14977201946720697 0.14977201946720697 0.14977201946720697 0.14977201946720697 0 1.805462187404089 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}[MD]WYV{I|L};[YV]{I|L}[{M(Oxidation (M))|F}T]{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F}{I|L} 4.3062;4.2937;2.516 -;-;- 85 NaN NaN 145991.9 NaN 17484 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21476 86.613 NaN 562860 35 0 74326 0.264 + 8181 GQCYYNEFML 10 58 423.17636235358 1266.50725766094 3 423.5108642578125 MULTI HCD FTMS 0 0 0 21471 151929.703125 0.7830063915250589 -2 0.05564117431640625 5 Unmodified _GQCYYNEFML_ REV__ENST00000262919.9_1_20:3557573-3559301:+|nuORF 5.047519993296601 0.4485863789024576 1 NA{M(Oxidation (M))|F} 3 -1 47.435 0 0 3.7453 0 0 0 931.3363047529233 931.3363047529233 42.830918867322296 0 0 0 0 0.4247425010840047 2 0 0 NA{M(Oxidation (M))|F} 3.7453 - 16 + NaN NaN 186265.2 NaN 17485 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21477 86.616 NaN 358250 35 0 28688 0.261 + 15964 LPPWLQDPEL 10 83 604.3213348949031 1206.628116856606 2 604.3216552734375 MULTI HCD FTMS 0 0 0 21471 186114.40625 0.2699130437147152 9 -0.22127532958984375 6 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 19.361941925380144 0.3300069447713393 1 [YN]AST{M(Oxidation (M))|F}TW 8 10 55.672 0 0 4.6138 0 0 0 233.1870764000145 233.1870764000145 20.72637280169687 0 0 0 0 0 2 1.2614393726401687 0.6549471895720985 [YN]AST{M(Oxidation (M))|F}TW 4.6138 - 3363 NaN NaN 150197.2 NaN 17486 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21478 86.619 NaN 1131200 35 0 153340 0.261 + -1 WRFFNQLCKWF 11 97 544.6036479285815 1630.7891143859442 3 544.9381103515625 MULTI HCD FTMS 0 0 0 21471 558065.4375 0.9708419500675204 -2 0.05564117431640625 7 Carbamidomethyl (C) _WRFFNQLC(Carbamidomethyl (C))KWF_ REV__ENST00000264414.8_1_2:225376277-225378293:-|nuORF 0.09484139111097674 0.41850472438158626 1 Q[{M(Oxidation (M))|F}T]{I|L}{I|L}KD{M(Oxidation (M))|F}A{I|L} 10 -1 83.167 0 0 5.0998 0 0 436.16096694160314 0 436.16096694160314 0 64.4432847062459 0 0 0 2.3494850021680094 0 0 1.4802046884880937 Q[{M(Oxidation (M))|F}T]{I|L}{I|L}KD{M(Oxidation (M))|F}A{I|L} 5.0998 - 1075 NaN NaN 250723.1 NaN 17487 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21479 86.623 NaN 244710 35 0 53358 0.261 -1 0 40 645.3781187317016 644.3708422651016 1 645.3776245117188 MULTI HCD FTMS 0 0 0 21471 62164.23828125 0.28344858381195054 -14 0.3762664794921875 8 NaN NaN 1 E 1 -1 6.9897 0 0 1.0847 0 0 338.06143782349847 174.23838220767814 512.2998200311766 0 0 0 0 0 0 0 0 0 E 1.0847 - 1 + NaN NaN 137332.3 NaN 17488 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21480 86.626 NaN 195320 35 0 19324 0.264 + 2038 DEEDFPNL 8 50 489.7059042138715 977.3972554945431 2 489.70562744140625 MULTI HCD FTMS 0 0 0 21471 153256.59375 1 0 0 9 Unmodified _DEEDFPNL_ REV__ENSG00000131381|ENST00000253699|RBSN 2.577480529830294 0.5381683276125971 1 {I|L} 1 -1 6.9897 0 0 0.71513 0 0 130.91446030932144 730.3787325494749 861.2931928587964 0 0 0 0 0 0 0 0 0 {I|L} 0.71513 + + 7 + NaN NaN 127091.4 NaN 17489 3989 21471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21482 86.631 NaN 2299500 35 0 100280 0.327 + 396 AKFRKQERA 9 117 567.3304148038226 1132.646276674445 2 567.330322265625 MULTI HCD FTMS 0 0 0 21481 3052000.5 0.7890545585764651 4 -0.0974884033203125 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 6.2057823575117 0.30397260197431997 1 {M(Oxidation (M))|F} 1 8 11.42 0 0 1.0083 0 0 967.5677224525685 0 967.5677224525685 0 -2.794458041808916 -2.794458041808916 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0083 + + 474 + NaN NaN 346849.7 NaN 17490 3990 21481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21483 86.635 NaN 3920500 35 0 809770 0.261 + 10800 ISSWEDTFN 9 107 549.7407757267019 1097.4669985202038 2 549.740478515625 MULTI HCD FTMS 0 0 0 21481 394756.5625 0.7582967037452704 -2 0.0556488037109375 2 Unmodified _ISSWEDTFN_ REV__ENSG00000143164|ENST00000367840|DCAF6;REV__nc|ENSG00000143164|Q58WW2-2|DCAF6;REV__nc|ENSG00000143164|Q58WW2-4|DCAF6;REV__nc|ENSG00000143164|Q58WW2|DCAF6 43.85829265575387 0.04763305254408404 1 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 -1 + 98.655 0 0 8.9894 8.9894 95.66 0 0 0 74.59569063612989 2.6009061466849204 2.6009061466849204 17.36494082808356 0 1.8252574989159953 1.5228787452803376 1.555462187404089 0.5796896906561032 {I|L}SS{M(Oxidation (M))|F}SDE[WQ];{[QG]|[NA]}{M(Oxidation (M))|F}EDD{M(Oxidation (M))|F}Q{I|L};{I|L}SS{[CA]|SS}RMDC{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}ED[Q{I|L}]{[{M(Oxidation (M))|F}D]|MM};{[WT]|[RM]}{[CA]|SS}DD{M(Oxidation (M))|F}Q{I|L};{I|L}SC(Carbamidomethyl (C))TRMDC{I|L};{I|L}SC(Carbamidomethyl (C))TRM[PS]{M(Oxidation (M))|F};{[WT]|[RM]}{[CA]|SS}DSESS{I|L};{[TV]|[{I|L}S]}S[WY]EE{[QG]|[NA]};{[TV]|[{I|L}S]}S{[CA]|SS}DSE{[WT]|[RM]} 8.9894;7.4071;5.1789;4.8211;4.6683;4.5117;4.5076;4.4522;4.2539;4.2035 -;-;-;-;-;-;-;-;-;- 3561 + NaN NaN 694166 NaN 17491 3990 21481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21484 86.639 NaN 1019800 35 0 165500 0.261 + 22823 QYLPYISYL 9 81 580.3053604351962 1158.5961679371924 2 580.3052368164062 MULTI HCD FTMS 0 0 0 21481 437466.34375 0.24672206285100676 -5 0.1474151611328125 3 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 99.79894945604345 0.0042691968066200965 1 [YQ]{I|L}PY{I|L}SY{I|L} 9 0 + 68.148 0 0 5.882 5.882 85.923 0 0 0 6.711798521132735 12.476635822175453 6.711798521132735 6.711798521132735 0 2.031718309096375 0 1 0.9749073637206092 + + [YQ]{I|L}PY{I|L}SY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PY{I|L}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}RR[KS]SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}Q{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[AG]{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L} 5.882;5.3027;3.299;2.9324;2.1376 +;-;-;-;- + 312 NaN NaN 247392.3 NaN 17492 3990 21481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21485 86.642 NaN 496960 35 0 94910 0.264 + 32654 WNHYPVRRY 9 41 430.8881663475378 NaN 0 430.8880920410156 PEAK HCD FTMS 0 0 0 21481 260891.9375 0.7583009167415488 -1 0.03282928466796875 4 Unmodified _WNHYPVRRY_ REV__ENSG00000112541|ENST00000539869|PDE10A;REV__nc|ENSG00000112541|Q9Y233-1|PDE10A;REV__nc|ENSG00000112541|Q9Y233-2|PDE10A 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 161835.7 NaN 17493 3990 21481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21486 86.645 NaN 170140 35 0 17561 0.261 + 135 AEDVFIADF 9 46 513.7426712592171 1025.4707895852341 2 513.7423706054688 MULTI HCD FTMS 0 0 0 21481 79248.5390625 0.5249199797935201 5 -0.1201934814453125 5 Unmodified _AEDVFIADF_ REV__ENSG00000134452|ENST00000362091|FBH1;REV__nc|ENSG00000134452|Q8NFZ0-2|FBH1 37.97399986684836 0.07464525285885698 1 H{I|L}AD{M(Oxidation (M))|F} 5 -1 55.573 0 0 5.4193 0 0 424.19758803535314 0 424.19758803535314 0 31.35151878060192 0 0 0 2 0 0 0 H{I|L}AD{M(Oxidation (M))|F} 5.4193 - 107 NaN NaN 108754.4 NaN 17494 3990 21481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21488 86.65 NaN 1151300 35 0 64154 0.327 -1 0 112 575.8429950900887 1149.6714372469773 2 575.8432006835938 MULTI HCD FTMS 0 0 0 21487 970696.4375 0.5251016282564893 2 -0.04534149169921875 1 NaN NaN 1 D 1 -1 10.599 0 0 0.92191 0 0 61.05233276808446 970.5444896379668 1031.5968224060512 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.92191 - 266 + NaN NaN 252113.1 NaN 17495 3991 21487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21489 86.655 NaN 1403500 35 0 427770 0.261 + 28407 TPFLYDLVM 9 80 557.7783515620231 1113.542150190846 2 557.7781982421875 MULTI HCD FTMS 0 0 0 21487 912566.375 0.6232405193657478 2 -0.04534149169921875 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 92.8221339359638 0.0044520161739443126 1 [YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F} 9 4 + 67.885 0 0 6.0963 6.0963 86.906 0 0 0 3.411290632962718 60.895709633532746 3.411290632962718 8.284634594678266 0 1 0 1.2302046884880937 0 [YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YT]{I|L}D{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YE]{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};[YT]{I|L}PE[{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}V]EP{I|L}V{M(Oxidation (M))|F} 6.0963;5.3524;4.7693;4.2338;3.8524 -;-;-;-;- 494 NaN NaN 295792.7 NaN 17496 3991 21487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21490 86.658 NaN 1617400 35 0 118700 0.261 + 17340 LYPVTVNMLF 10 103 606.8205422829603 1211.6265316327206 2 606.821044921875 MULTI HCD FTMS 0 0 0 21487 273152.4375 0.5496466579746536 2 -0.04534149169921875 3 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 41.95555342248728 0.12843670176738353 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDSESS{I|L} 10 10 43.524 0 0 3.5922 0 0 0 129.14729582730106 129.14729582730106 7.304497420548934 0 0 0 0 0 0 0.7614393726401688 0.555462187404089 {[QG]|[NA]}{M(Oxidation (M))|F}EDSESS{I|L} 3.5922 - 1903 NaN NaN 325477.1 NaN 17497 3991 21487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21491 86.661 NaN 207990 35 0 36035 0.263 + 14275 LCVNGHFF 8 43 468.7233090035001 NaN 0 468.7232360839844 PEAK HCD FTMS 0 0 0 21487 106218.53125 0.911453357471657 1 -0.02266693115234375 4 Unmodified _LCVNGHFF_ ENSG00000135596|ENST00000358807|MICAL1;ENST00000456101.6_1_6:109766698-109772967:-|nuORF;ENST00000465904.1_1_6:109767733-109768483:-|nuORF;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1 2.8892196856762586 0.38822285293237185 1 {I|L} 1 7 5.4846 0 0 0.58631 0 0 165.03285988242288 654.2896212213499 819.3224811037728 0 0 0 0 0 0 0 0 0 + {I|L} 0.58631 + + 1 + NaN NaN 128438.1 NaN 17498 3991 21487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21492 86.665 NaN 2487300 35 0 534700 0.261 + -1 MNELDEQW 8 92 540.7174950711408 NaN 0 540.7362060546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))NELDEQW_ REV__ENSG00000170962|ENST00000393158|PDGFD;REV__nc|ENSG00000170962|Q9GZP0-2|PDGFD 15.847184025352803 0.3871869056683869 1 S{M(Oxidation (M))|F}SDE{M(Oxidation (M))|F} 6 -1 37.058 0 0 3.4331 0 0 182.0699061160571 182.05710779361564 364.12701390967277 0 0 0 0 0 0 0 1.1307196863200843 0 S{M(Oxidation (M))|F}SDE{M(Oxidation (M))|F} 3.4331 - 642 + NaN NaN 478881.9 NaN 17499 3991 21487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21493 86.668 NaN 85505 35 0 19386 0.261 -1 0 40 473.1011450202646 472.0938685536646 1 473.1011047363281 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 {NN|[MP]|[D{I|L}]|[EV]}TA 4 -1 6.9112 0 0 1.464 0 0 0 68.89709666329273 68.89709666329273 6.911225100727592 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}TA 1.464 - 11 NaN NaN 114321.1 NaN 17500 3991 21487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21495 86.673 NaN 1039900 35 0 62733 0.327 -1 0 120 589.3430503555608 1176.6715477779214 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21494 639159.4375 0.46632533637135265 15 -0.33184051513671875 1 NaN NaN 1 WT{M(Oxidation (M))|F}{M(Oxidation (M))|F}WW 6 -1 42.384 0 0 3.602 0 0 205.25034699386657 0 205.25034699386657 0 21.36541455876223 0 0 0 0 0 0.4247425010840047 0 WT{M(Oxidation (M))|F}{M(Oxidation (M))|F}WW 3.602 - 1901 + NaN NaN 244583.4 NaN 17501 3992 21494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21496 86.677 NaN 618840 35 0 127240 0.261 + 5827 FPDASFQVVL 10 77 561.7953064240825 1121.5760599149648 2 561.7951049804688 MULTI HCD FTMS 0 0 0 21494 351647.96875 0.2921470993858354 -11 0.29764556884765625 2 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 10.150570793230772 0.4161670024087991 1 QVV{I|L} 4 6 36.587 0 0 3.2621 0 0 664.286424705275 0 664.286424705275 0 31.982522177562203 0 0 0 0.7742275032520141 0 0 0.3807196863200844 + QVV{I|L} 3.2621 + + 99 NaN NaN 176418.8 NaN 17502 3992 21494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21497 86.681 NaN 266580 35 0 47708 0.261 + -1 MYDLDSFI 8 47 510.2230592181391 1018.4315655030782 2 510.2229919433594 MULTI HCD FTMS 0 0 0 21494 137058.015625 0.43030549648390837 3 -0.0780792236328125 3 Oxidation (M) _M(Oxidation (M))YDLDSFI_ REV__ENSG00000140105|ENST00000392882|WARS1;REV__ENST00000554084.5_1_14:100819360-100828234:-|nuORF;REV__nc|ENSG00000140105|P23381-2|WARS1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.45208 0 0 129.97845378608446 738.3685396783811 868.3469934644656 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45208 + + 5 + NaN NaN 121566.3 NaN 17503 3992 21494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21498 86.684 NaN 241470 35 0 16591 0.261 + -1 DNMSDMITML 10 55 601.7388878821938 1201.4632228311875 2 602.2406616210938 MULTI HCD FTMS 0 0 0 21494 74093.8359375 0.5132261093901979 1 -0.022674560546875 4 2 Oxidation (M) _DNM(Oxidation (M))SDM(Oxidation (M))ITML_ REV__ENSG00000100883|ENST00000216774|SRP54;REV__ENST00000553923.1_1_14:35483969-35488318:+|nuORF;REV__ENST00000556445.1_1_14:35487839-35488318:+|nuORF;REV__nc|ENSG00000100883|P61011-2|SRP54 10.823927491677226 0.4098686510432541 1 [YV]{I|L} 3 -1 27.447 0 0 2.2845 0 0 0 823.2244731478216 823.2244731478216 14.431890546242343 0 0 0 0 0 1.6989700043360187 0 0 [YV]{I|L} 2.2845 - 132 NaN NaN 141344.1 NaN 17504 3992 21494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21499 86.687 NaN 743430 35 0 96204 0.261 + -1 CDWWRQFWTRL 11 109 551.9307676386753 1652.7704735162258 3 551.930419921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))DWWRQFWTRL_ REV__ENSG00000198089|ENST00000400288|SFI1;REV__ENST00000382162.7_1_22:32002284-32014401:+|nuORF;REV__nc|ENSG00000198089|A8K8P3-10|SFI1;REV__nc|ENSG00000198089|A8K8P3-2|SFI1;REV__nc|ENSG00000198089|A8K8P3-3|SFI1;REV__nc|ENSG00000198089|A8K8P3-4|SFI1;REV__nc|ENSG00000198089|A8K8P3-9|SFI1 0.40826533853263924 0.41713015341995335 1 NEGDA 5 -1 53.416 0 0 3.2319 0 0 0 1163.575935783305 1163.575935783305 32.447274948966935 0 0 0 0 0.5 1.5228787452803376 0 0 NEGDA 3.2319 - 191 + NaN NaN 193581.3 NaN 17505 3992 21494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21500 86.691 NaN 336180 35 0 81574 0.261 + 6710 FPPPEEFVF 9 69 554.7712650682614 1107.5279772033227 2 554.7715454101562 MULTI HCD FTMS 0 0 0 21494 148476.078125 0.47423658017142145 10 -0.2369842529296875 6 Unmodified _FPPPEEFVF_ ENSG00000214753|ENST00000301785|HNRNPUL2 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 38.5 0 0 3.4762 0 0 696.3121427963612 0 696.3121427963612 0 20.964015683995783 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.4762 + + 116 NaN NaN 133634.4 NaN 17506 3992 21494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21502 86.696 NaN 3065600 35 0 275000 0.327 -1 0 122 626.2790098975455 1250.543466861891 2 626.2788696289062 MULTI HCD FTMS 0 0 0 21501 2234873.25 0.6976271761017769 1 -0.0326995849609375 1 NaN NaN 1 NA{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 N{[MS]|[{M(Oxidation (M))|F}A]} + + 85.303 1.0823 0.30907 6.8213 6.8213 64.802 0 0 0 27.020986676908052 0 0 0 0 2.8807196863200843 0 1.1906140654642814 0 NA{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 6.8213 - 10881 + NaN NaN 553789.2 NaN 17507 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21503 86.7 NaN 2209900 35 0 453040 0.261 -1 HEWCFCACL 9 119 641.7436269031326 1281.4727008730652 2 641.7437133789062 MULTI HCD FTMS 0 0 0 21501 906680.125 0.7360779568051106 1 -0.0326995849609375 2 3 Carbamidomethyl (C) _HEWC(Carbamidomethyl (C))FC(Carbamidomethyl (C))AC(Carbamidomethyl (C))L_ ENST00000418448.1_1_13:57889915-57890026:+|nuORF 7.910154910731844 0.2910521888787154 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDEAE[DC]A 11 -1 54.495 0 0 4.2526 0 0 0 84.02393666452636 84.02393666452636 14.396815460992457 0 0 0 0 0.9802046884880937 0 1.0114393726401687 0.7614393726401688 {[QG]|[NA]}{M(Oxidation (M))|F}EDEAE[DC]A 4.2526 - 1321 NaN NaN 442832.3 NaN 17508 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21504 86.703 NaN 1305300 35 0 136990 0.261 + -1 TKCMEFYQVC 10 104 634.2616167544104 1266.5086805756207 2 634.2611694335938 MULTI HCD FTMS 0 0 0 21501 510065.21875 0.6308645410950671 1 -0.0326995849609375 3 Oxidation (M) _TKCM(Oxidation (M))EFYQVC_ REV__ENSG00000146350|ENST00000398212|TBC1D32;REV__nc|ENSG00000146350|Q96NH3-4|TBC1D32 22.736283301280096 0.29844449404982915 1 [WE]E[{M(Oxidation (M))|F}V]DE{M(Oxidation (M))|F} 8 -1 51.846 0 0 4.0936 0 0 0 182.0559479639866 182.0559479639866 18.503408036488608 0 0 0 0 1.1861818737241734 1.154901959985743 1.7544321917401078 0 [WE]E[{M(Oxidation (M))|F}V]DE{M(Oxidation (M))|F} 4.0936 - 1287 NaN NaN 283783.8 NaN 17509 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21505 86.707 NaN 349650 35 0 17500 0.261 -1 0 105 597.8564781435832 1193.6984033539663 2 597.8565063476562 MULTI HCD FTMS 0 0 0 21501 194776.109375 0.3289429921946676 20 -0.435302734375 4 NaN NaN 1 W 1 -1 12.764 0 0 1.0693 0 0 989.6090764270117 0 989.6090764270117 0 5.105494199486138 0 0 0 0 0 0 0 W 1.0693 - 280 + NaN NaN 131652.2 NaN 17510 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21506 86.71 NaN 521760 35 0 200110 0.261 -1 0 69 584.3564104122011 1166.698267891202 2 584.3561401367188 MULTI HCD FTMS 0 0 0 21501 173788.65625 0.35096198993089356 5 -0.1236572265625 5 NaN NaN 1 PVWD 4 -1 15.433 0 0 1.3228 0 0 112.22763908436453 554.2219332330686 666.4495723174332 0 0 0 0 0 0 0 0 0 PVWD 1.3228 - 81 + NaN NaN 161089 NaN 17511 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21507 86.713 NaN 203660 35 0 43744 0.261 -1 CSNCTSNGMEC 11 49 611.1853655342815 NaN 0 611.2461547851562 PEAK HCD FTMS 0 0 0 21501 13261.212890625 0.3218856047930263 -4 0.09761810302734375 6 Carbamidomethyl (C),Oxidation (M) _CSNCTSNGM(Oxidation (M))EC(Carbamidomethyl (C))_ ENSG00000107518|ENST00000355044|ATRNL1 0.3070304955306653 0.3412491863730806 1 M 1 -1 4.6041 0 0 0.37727 0 0 646.0110376097754 440.2802828424438 1086.2913204522192 0 0 0 0 0 0 0 0 0 M 0.37727 + + 1 + NaN NaN 126896.1 NaN 17512 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21508 86.717 NaN 117550 35 0 28103 0.264 + -1 LCCASAGL 8 32 426.1913881964687 NaN 0 426.1913146972656 PEAK HCD FTMS 0 0 0 21501 16752.0859375 0.09235321844484486 -7 0.17610931396484375 7 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))C(Carbamidomethyl (C))ASAGL_ REV__ENSG00000162461|ENST00000294454|SLC25A34 2.8892196856762586 0.38822285293237185 1 {I|L} 1 -1 5.4846 0 0 0.64496 0 0 59.039228166216 675.2251539505583 734.2643821167743 0 0 0 0 0 0 0 0 0 {I|L} 0.64496 + + 1 + NaN NaN 114574.1 NaN 17513 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21509 86.72 NaN 178840 35 0 24310 0.261 + 29811 VEMLELVF 8 48 490.2627505368247 NaN 0 490.26239013671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _VEMLELVF_ ENST00000530567.1_1_11:64976762-64977505:+|nuORF 9.347437153973935 0.38822285293237185 1 R{I|L}EV 4 5 13.532 0 0 1.3829 0 0 316.1460932593931 162.0554598443969 478.20155310379005 0 0 0 0 0 0 0 0 0 R{I|L}EV 1.3829 - 57 + NaN NaN 130330.7 NaN 17514 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21510 86.723 NaN 468830 35 0 82102 0.261 + 35272 YVTVPEGLL 9 57 495.78095932555493 NaN 0 495.7807922363281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YVTVPEGLL_ ENSG00000115129|ENST00000238721|TP53I3;nc|ENSG00000115129|Q53FA7-2|TP53I3 11.640296217721598 0.23883959125015683 1 {I|L} 1 8 7.3464 0 0 0.7424 0 0 131.097121259615 742.3446749322874 873.4417961919023 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.7424 + + 6 + NaN NaN 154910.5 NaN 17515 3993 21501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21512 86.728 NaN 1015100 35 0 185490 0.327 + -1 TRYDYSSLLS 10 69 623.8011571336598 1245.5877613341195 2 623.8007202148438 MULTI HCD FTMS 0 0 0 21511 670400.9375 0.6593839504557848 2 -0.04212188720703125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TRYDYSSLLS_ REV__ENST00000511736.5_1_5:43139401-43191858:+|nuORF 6.2057823575117 0.44245551207394906 1 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 -1 58.893 0 0 4.7281 0 0 148.12137921929826 0 148.12137921929826 0 14.278259348524358 0 0 0 0 0 1.6747425010840047 0.3807196863200844 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 4.7281 - 480 + NaN NaN 236727.6 NaN 17516 3994 21511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21513 86.733 NaN 304370 35 0 29800 0.261 + 15229 LNYCQKESWC 10 66 637.2702146906556 1272.5258764481111 2 637.2705688476562 MULTI HCD FTMS 0 0 0 21511 217726.828125 0.7132153168029526 3 -0.07151031494140625 2 Unmodified _LNYCQKESWC_ ENSG00000174871|ENST00000311445|CNIH2;ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF 9.38312468134398 0.42334543440173333 1 {M(Oxidation (M))|F}MD{I|L} 4 10 29.469 0 0 2.3158 0 0 205.08784041471114 558.2167451124815 763.3045855271926 0 0 0 0 0 0.8494850021680094 0 0.3807196863200844 0 {M(Oxidation (M))|F}MD{I|L} 2.3158 - 117 + NaN NaN 128970.9 NaN 17517 3994 21511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21514 86.736 NaN 623360 35 0 69326 0.261 -1 LYQVWSLCI 9 95 591.3052261931989 1180.5958994531977 2 591.29443359375 MULTI HCD FTMS 0 0 0 21511 42880.19921875 0.04014873052349703 12 -0.2538299560546875 3 Carbamidomethyl (C) _LYQVWSLC(Carbamidomethyl (C))I_ ENST00000371117.7_1_6:51750749-51768419:-|nuORF 24.020572477871973 0.15282392193088168 1 [YQ]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}C(Carbamidomethyl (C)){I|L} 9 -1 + 41.392 0 0 3.506 3.506 84.25 0 0 0 4.761131849867084 10.946757120868256 4.761131849867084 9.208187539523749 0 0 1.154901959985743 0 0.6989700043360187 [YQ]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}C(Carbamidomethyl (C)){I|L};[YQ]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AAPY{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}W{[VA]|[{I|L}G]}[SG]Y{I|L};[YQ]{I|L}PYA[KA]{NN|[MP]|[D{I|L}]|[EV]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QQ{M(Oxidation (M))|F};[YQ]{I|L}P[NG]{[ET]|[MV]}{M(Oxidation (M))|F}{I|L};[YK]{I|L}P[NG][VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KA]A[EP]{M(Oxidation (M))|F}C(Carbamidomethyl (C)){I|L} 3.506;2.7261;2.3764;2.1863;1.7061;1.5554;1.448;1.4301;1.3884;1.2357 -;-;-;-;-;-;-;-;-;- 968 NaN NaN 179613 NaN 17518 3994 21511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21515 86.739 NaN 173730 35 0 16157 0.261 -1 SCQSQKMTVC 10 68 594.246075955681 1186.477598978162 2 594.2442016601562 MULTI HCD FTMS 0 0 0 21511 66122.0703125 0.32514134709600645 5 -0.117034912109375 4 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))QSQKM(Oxidation (M))TVC_ ENST00000453643.5_3_22:43389626-43411079:-|nuORF 5.731851221503515 0.44496410492002586 1 {I|L} 1 -1 9.732 0 0 0.82024 0 0 106.98289597840888 963.3685396783811 1070.35143565679 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.82024 - 35 + NaN NaN 104607.9 NaN 17519 3994 21511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21516 86.743 NaN 120440 35 0 10565 0.261 -1 VCRCWSHSN 9 59 603.250535551071 1204.486518168942 2 603.2495727539062 MULTI HCD FTMS 0 0 0 21511 83927.3984375 0.39311350140006823 5 -0.117034912109375 5 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))RC(Carbamidomethyl (C))WSHSN_ ENST00000512286.1_1_4:25750049-25759447:-|nuORF 3.944395688203298 0.32111559684428237 1 C(Carbamidomethyl (C)) 1 -1 11.99 0 0 0.99542 0 0 420.1420802977744 621.2738131158811 1041.4158934136556 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 0.99542 + + 30 + NaN NaN 99969.7 NaN 17520 3994 21511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21517 86.746 NaN 772230 35 0 160590 0.261 + 27249 SYPDLLPTF 9 56 526.7686078377452 1051.5226627422903 2 526.769287109375 MULTI HCD FTMS 0 0 0 21511 142792.796875 0.07865506108606196 -9 0.244903564453125 6 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 88.90359156742426 0.00455469703666567 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP]PT{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}C]|[YS]} + + 55.679 3.7236 1.4889 5.2951 5.2951 62.083 0 0 0 0 32.545094889371526 0 0 0 1.4247425010840047 0 1.774227503252014 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP]PT{M(Oxidation (M))|F} 5.2951 - 452 + NaN NaN 195728.2 NaN 17521 3994 21511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21519 86.751 NaN 16853000 35 0 3927800 0.327 + 18904 NAFEDSFSSIL 11 100 615.2882252766974 1228.5618976201947 2 615.288818359375 MULTI HCD FTMS 0 0 0 21518 17101774 0.6240678816166045 3 -0.0682525634765625 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 190.03143192339053 2.41502504821315E-14 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 123.63 0 0 10.063 10.063 97.712 0 0 0 18.649032623855504 65.59847402728717 18.649032623855504 29.30523450795789 0 3.524227503252014 0 1.9916440611282626 1.2786596949921218 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}TDD{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]E[NG]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]D{[QG]|[NA]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[QG]|[NA]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}YGEE{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]ES[NG]{M(Oxidation (M))|F}SS{I|L}{I|L} 10.063;7.6774;7.3954;7.0077;6.8063;6.7999;6.5549;6.5416;6.204;6.1107 +;-;-;-;-;-;-;-;-;- + 5300 NaN NaN 545658.6 NaN 17522 3995 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21520 86.755 NaN 424330 35 0 57687 0.264 + 8182 GQCYYNEFML 10 62 423.17636235358 1266.50725766094 3 423.1763610839844 MULTI HCD FTMS 0 0 0 21518 191807.578125 0.6052000322229465 5 -0.12026214599609375 2 Unmodified _GQCYYNEFML_ REV__ENST00000262919.9_1_20:3557573-3559301:+|nuORF 7.945399516374404 0.4332474418965133 1 NA{M(Oxidation (M))|F} 3 -1 47.435 0 0 3.7453 0 0 0 931.3368320060172 931.3368320060172 28.455612550363796 0 0 0 0 0.4247425010840047 2 0 0 NA{M(Oxidation (M))|F} 3.7453 - 15 + NaN NaN 156616.3 NaN 17523 3995 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21521 86.759 NaN 217610 35 0 19854 0.261 + -1 MSGMILSCSW 10 74 594.246075955681 1186.477598978162 2 595.25146484375 MULTI HCD FTMS 0 0 0 21518 66665.75 0.24845564254598948 6 -0.132965087890625 3 Carbamidomethyl (C),Oxidation (M) _MSGM(Oxidation (M))ILSC(Carbamidomethyl (C))SW_ REV__ENST00000295049.8_1_2:198540403-198540484:-|nuORF 10.073929032068715 0.4168838835836452 1 Q{M(Oxidation (M))|F}A{[MG]|[TS]}{M(Oxidation (M))|F}TW{[CP]|[EA]} 10 -1 + 37.401 0 0 3.1523 3.1523 81.945 0 0 0 14.100103527040844 3.379231027444405 3.379231027444405 6.194028404633158 0 0.5 0 0.3807196863200844 0 Q{M(Oxidation (M))|F}A{[MG]|[TS]}{M(Oxidation (M))|F}TW{[CP]|[EA]};{[DS]|[MA]|[CV]|TT}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F}{[MG]|[TS]}AG{[CP]|[EA]};Q{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}TW{[CP]|[EA]};Q{M(Oxidation (M))|F}A{[MG]|[TS]}{M(Oxidation (M))|F}[WD]W;{[MS]|[{M(Oxidation (M))|F}A]}GA{[MG]|[TS]}{M(Oxidation (M))|F}[WD]W;{[MS]|[{M(Oxidation (M))|F}A]}WT{M(Oxidation (M))|F}{[MG]|[TS]}AG{[CP]|[EA]};Q{M(Oxidation (M))|F}[WY]GTW{[CP]|[EA]};{[DS]|[MA]|[CV]|TT}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{[CP]|[EA]};Q{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[WD]W;{[DS]|[MA]|[CV]|TT}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F}{[MG]|[TS]}Q{[CP]|[EA]} 3.1523;2.6302;2.6017;2.5824;2.3175;2.2121;2.1996;2.0729;2.0364;2.0058 -;-;-;-;-;-;-;-;-;- 398 + NaN NaN 119312.6 NaN 17524 3995 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21522 86.762 NaN 234660 35 0 46653 0.261 -1 MKLKNMLLAK 10 65 611.3563383987387 1220.6981238642772 2 611.3576049804688 MULTI HCD FTMS 0 0 0 21518 62883.078125 0.08763482139513089 -12 0.3265838623046875 4 2 Oxidation (M) _M(Oxidation (M))KLKNM(Oxidation (M))LLAK_ ENSG00000174206|ENST00000398055|KICS2 1.4819007175156935 0.4674597685733628 1 M 1 -1 4.6041 0 0 0.37717 0 0 646.355974061346 440.2804354303344 1086.6364094916805 0 0 0 0 0 0 0 0 0 M 0.37717 + + 8 + NaN NaN 122704.2 NaN 17525 3995 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21523 86.766 NaN 158190 35 0 16742 0.262 + 3103 EALAYFITV 9 62 513.7789540611908 NaN 0 513.7786865234375 PEAK HCD FTMS 0 0 0 21518 24794.814453125 0.4312321519389464 1 -0.01941680908203125 5 Unmodified _EALAYFITV_ ENSG00000124198|ENST00000371917|ARFGEF2 36.12702656103203 0.09069617296470832 1 T{I|L}{M(Oxidation (M))|F}[VP]AD 7 8 35.45 0 0 3.4567 0 0 117.07717802140719 162.05605493717033 279.13323295857754 0 0 0 0 0 1.5 0 0.3494850021680094 0 T{I|L}{M(Oxidation (M))|F}[VP]AD 3.4567 - 93 + NaN NaN 101616.6 NaN 17526 3995 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21525 86.77 NaN 1888900 35 0 72794 0.327 + 397 AKFRKQERA 9 130 567.3304148038226 1132.646276674445 2 567.3303833007812 MULTI HCD FTMS 0 0 0 21524 2362484.5 0.610789272246594 10 -0.21170806884765625 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 1 Q 1 8 12.346 0 0 1.09 0 0 546.3261879771027 455.2498009392241 1001.5759889163268 0 0 0 0 0 0.7742275032520141 0 0 0 + Q 1.09 + + 724 + NaN NaN 362043.9 NaN 17527 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21526 86.775 NaN 2423400 35 0 357110 0.261 + 22824 QYLPYISYL 9 96 580.3053604351962 1158.5961679371924 2 580.3054809570312 MULTI HCD FTMS 0 0 0 21524 1755689.25 0.9901727976881352 1 -0.029388427734375 2 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 139.13845188893973 5.0762478717762276E-05 1 [YQ]{I|L}PY{I|L}SY{I|L} 9 0 + 83.942 0 0 7.2451 7.2451 87.418 0 0 0 1.178090289248388 49.33992802389298 1.178090289248388 4.362066933883511 0 2.4802046884880937 0 1 1.3098943791441968 + + [YQ]{I|L}PY{I|L}SY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PY{I|L}SY{I|L};[YQ]{I|L}[Y{I|L}]PSY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[Y{I|L}]PSY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{M(Oxidation (M))|F}GPSY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}Q{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[AG]{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L};[YQ]{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}S{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};[YQ]{I|L}{[QN]|[E{I|L}]|[KN]}S{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}S{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 7.2451;6.8686;4.7572;4.3905;3.9271;3.2952;2.5004;1.8721;1.6123;1.4785 +;-;-;-;-;-;-;-;-;- + 1550 NaN NaN 455581.4 NaN 17528 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21527 86.778 NaN 2171300 35 0 477380 0.261 + 10687 IPVWDQEFL 9 100 573.7951807712552 1145.5758086093103 2 573.7951049804688 MULTI HCD FTMS 0 0 0 21524 1739761 0.42670746288790645 -7 0.1724395751953125 3 Unmodified _IPVWDQEFL_ ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 103.35351024395868 0.004027461563756449 1 [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L} 9 0 + 88.761 0 0 7.7482 7.7482 93.552 0 0 0 14.59491766415944 74.27137377678817 14.59491766415944 16.197887582883936 0 2.1549471895720984 1.0457574905606752 0.5941876774005248 0.6989700043360187 + + [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L};[{I|L}P]VWD[AG]E{M(Oxidation (M))|F}{I|L};[{I|L}P]VWDQE{I|L}{M(Oxidation (M))|F};[{I|L}P]VWD[AG]E{I|L}{M(Oxidation (M))|F} 7.7482;6.3342;6.282;5.1731 +;-;-;- + 689 NaN NaN 425833.4 NaN 17529 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21528 86.782 NaN 2160300 35 0 452890 0.261 + -1 LSCSEMLCR 9 99 549.7407757267019 1097.4669985202038 2 549.740478515625 MULTI HCD FTMS 0 0 0 21524 340898.59375 0.6548397278437215 4 -0.1008453369140625 4 Carbamidomethyl (C) _LSC(Carbamidomethyl (C))SEMLCR_ REV__nc|ENSG00000050628|P43115-12|PTGER3 36.12702656103203 0.08312389501731911 1 {I|L}SS{M(Oxidation (M))|F}SDE{M(Oxidation (M))|F} 8 -1 80.99 0 0 7.3798 0 0 0 182.0570467584594 182.0570467584594 61.055402348527736 0 0 0 0 1.524227503252014 1.3979400086720375 1.1694451763165201 0 {I|L}SS{M(Oxidation (M))|F}SDE{M(Oxidation (M))|F} 7.3798 - 1532 + NaN NaN 411604.7 NaN 17530 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21529 86.785 NaN 676660 35 0 144360 0.261 + 10693 IPVWETETGH 10 78 584.7861802477562 1167.5578075623123 2 584.7862548828125 MULTI HCD FTMS 0 0 0 21524 137063.5 0.29061741305079997 -4 0.09749603271484375 5 Unmodified _IPVWETETGH_ ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295 25.399314129420986 0.2735354021946395 1 {I|L}PVWDQ 6 6 80.935 0 0 6.932 0 0 0 426.16291223697505 426.16291223697505 68.57123154459948 0 0 0 0 1.4247425010840047 1.5228787452803376 0.4247425010840047 0.3054621874040891 {I|L}PVWDQ 6.932 - 96 + NaN NaN 190681.1 NaN 17531 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21530 86.788 NaN 534010 35 0 132420 0.261 + 31058 VSWFDLEL 8 49 504.7554588418199 1007.4963647504399 2 504.755615234375 MULTI HCD FTMS 0 0 0 21524 254092.609375 0.09421818164373609 -8 0.19525909423828125 6 Unmodified _VSWFDLEL_ ENST00000537971.5_1_12:3395045-3395321:+|nuORF 34.10243960390752 0.30669083636501265 1 D{I|L}E{I|L} 4 4 42.295 0 0 4.198 0 0 519.24727496342 0 519.24727496342 0 28.315468932362577 0 0 0 0.9119543704721594 0 0.4247425010840047 0 + D{I|L}E{I|L} 4.198 + + 64 NaN NaN 166396.8 NaN 17532 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21531 86.792 NaN 309260 35 0 30792 0.261 + 29033 TYFDLWIML 9 66 601.3032067421717 1200.5918605511433 2 601.3042602539062 MULTI HCD FTMS 0 0 0 21524 116376.0703125 0.014993006696320876 27 -0.61859130859375 7 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 16.942295170755138 0.21397866736869717 1 [YV]{I|L}W[MD]YV{I|L} 9 -1 + 62.304 0 0 5.1894 5.1894 89.504 0 0 0 19.177353201839438 16.478174818886373 16.478174818886373 19.177353201839438 0 2.024227503252014 1.6989700043360187 0 0 [YV]{I|L}W[MD]YV{I|L};[YV]{I|L}[YT]WP{M(Oxidation (M))|F}{I|L} 5.1894;3.5921 -;- 172 NaN NaN 125410.1 NaN 17533 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21532 86.795 NaN 164550 35 0 42544 0.264 -1 MCMNCGCDF 9 42 404.1212646016589 NaN 0 404.120849609375 PEAK HCD FTMS 0 0 0 21524 41403.91015625 0.6422750936062809 2 -0.04883575439453125 8 3 Carbamidomethyl (C),Oxidation (M) _MC(Carbamidomethyl (C))M(Oxidation (M))NC(Carbamidomethyl (C))GC(Carbamidomethyl (C))DF_ ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 0.26902006276349055 0.29394320858957723 1 Y 1 -1 1.5938 0 0 0.19769 0 0 339.0386584984365 301.10187708072505 640.1405355791616 0 0 0 0 0 0 0 0 0 Y 0.19769 - 1 + NaN NaN 114401.6 NaN 17534 3996 21524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21534 86.8 NaN 2627800 35 0 281080 0.327 -1 0 120 588.3110497572728 1174.6075465813456 2 588.3113403320312 MULTI HCD FTMS 0 0 0 21533 1152854.5 0.5918480734980184 -3 0.07151031494140625 1 NaN NaN 1 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L} 8 -1 72.229 0 0 6.1492 0 0 0 162.05669873270634 162.05669873270634 32.42596009343559 0 0 0 0 2.6861818737241734 2 1.2174165578762486 0.3807196863200844 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L} 6.1492 - 5631 NaN NaN 493262.2 NaN 17535 3997 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21535 86.804 NaN 1061500 35 0 343770 0.261 + 28408 TPFLYDLVM 9 73 557.7783515620231 1113.542150190846 2 557.7783813476562 MULTI HCD FTMS 0 0 0 21533 578762.375 0.39526786551208803 8 -0.15966033935546875 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 92.8221339359638 0.0044520161739443126 1 {I|L}YD{I|L}V{M(Oxidation (M))|F} 6 3 74.245 0 0 6.6675 0 0 345.1683521955094 0 345.1683521955094 0 64.6141744670914 0 0 0 2.305462187404089 0 1.1549471895720984 0 + {I|L}YD{I|L}V{M(Oxidation (M))|F} 6.6675 + + 545 NaN NaN 236910.9 NaN 17536 3997 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21536 86.808 NaN 962140 35 0 69015 0.261 + 17341 LYPVTVNMLF 10 82 606.8205422829603 1211.6265316327206 2 606.8211059570312 MULTI HCD FTMS 0 0 0 21533 156782.484375 0.31548306635807377 8 -0.15966033935546875 3 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 45.69961567697781 0.09594615698576985 1 [Y{I|L}]PVTV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F} 10 0 + 38.024 0 0 3.1383 3.1383 85.026 0 0 0 19.290521660407123 0.7795501485934793 0.7795501485934793 10.19795311511906 0 1.5682503180159344 1.6989700043360187 0 0 + + [Y{I|L}]PVTV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PV[YN][{I|L}A]{I|L}{M(Oxidation (M))|F} 3.1383;2.2966 +;- + 495 NaN NaN 233298.8 NaN 17537 3997 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21537 86.811 NaN 162430 35 0 13382 0.261 + -1 QCNTEKSFAC 10 57 594.246075955681 1186.477598978162 2 595.2510375976562 MULTI HCD FTMS 0 0 0 21533 62856.69140625 0.23425971584591515 8 -0.15966033935546875 4 Carbamidomethyl (C) _QC(Carbamidomethyl (C))NTEKSFAC_ REV__ENSG00000186377|ENST00000371901|CYP4X1;REV__nc|ENSG00000186377|Q8N118-2|CYP4X1;REV__nc|ENSG00000186377|Q8N118-3|CYP4X1 4.897010918128616 0.4493830473644964 1 Q{M(Oxidation (M))|F} 2 -1 13.443 0 0 1.133 0 0 0 908.3548067682249 908.3548067682249 0.6837284479933441 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.133 - 53 + NaN NaN 115800.4 NaN 17538 3997 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21538 86.814 NaN 78006 35 0 4768 0.261 + 19662 NVLRRDLKPQ 10 41 619.8696821960666 1237.7248114589331 2 619.8692626953125 MULTI HCD FTMS 0 0 0 21533 72750.6328125 0.21067862088512848 -10 0.25746917724609375 5 Unmodified _NVLRRDLKPQ_ ENST00000442838.2_1_8:123781530-123781986:+|nuORF 0.4007161486938917 0.47318265037741464 1 S 1 10 1.5938 0 0 0.12877 0 0 863.5317400251425 284.1315096490844 1147.663249674227 0 0 0 0 0 0 0 0 0 S 0.12877 - 3 + NaN NaN 94890.3 NaN 17539 3997 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21540 86.819 NaN 1053700 35 0 38445 0.327 -1 0 115 575.8429950900887 1149.6714372469773 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21539 696719.5 0.3768928469854893 9 -0.18550872802734375 1 NaN NaN 1 D 1 -1 10.599 0 0 0.92191 0 0 61.05233086650953 970.545197537609 1031.5975284041185 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.92191 - 442 + NaN NaN 245312.3 NaN 17540 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21541 86.824 NaN 1093100 35 0 299990 0.261 + 5828 FPDASFQVVL 10 70 561.7953064240825 1121.5760599149648 2 561.7955322265625 MULTI HCD FTMS 0 0 0 21539 248802.609375 0.20670376941721863 -5 0.1236572265625 2 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 41.95555342248728 0.12843670176738353 1 S{M(Oxidation (M))|F}QVV{I|L} 6 4 66.191 0 0 5.9016 0 0 430.1852284162125 0 430.1852284162125 0 45.22160958700539 0 0 0 1.9247425010840047 0 0.3054621874040891 0.2742275032520141 + S{M(Oxidation (M))|F}QVV{I|L} 5.9016 + + 253 NaN NaN 248313.9 NaN 17541 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21542 86.827 NaN 213500 35 0 14440 0.262 + 12232 KLERHSGI 8 55 470.27217946135937 938.5298059895188 2 470.2718200683594 MULTI HCD FTMS 0 0 0 21539 169545.953125 0.20050808592842825 -7 0.16899871826171875 3 Unmodified _KLERHSGI_ REV__ENSG00000183495|ENST00000389561|EP400;REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;REV__nc|ENSG00000183495|Q96L91-3|EP400;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__nc|ENSG00000183495|Q96L91-5|EP400;REV__nc|ENSG00000183495|Q96L91|EP400 7.289230182591677 0.5311777711368266 1 Q 1 -1 12.848 0 0 1.369 0 0 308.1808602669627 499.27512537174067 807.4559856387034 0 0 0 0 0 0.6694451763165201 0 0 0.3054621874040891 Q 1.369 - 18 + NaN NaN 131610.7 NaN 17542 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21543 86.83 NaN 364390 35 0 25610 0.261 + -1 CHMLPQLF 8 74 531.2496242591615 1060.4846955851228 2 531.2501831054688 MULTI HCD FTMS 0 0 0 21539 98176.515625 0.07835877759400564 -11 0.27691650390625 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))HM(Oxidation (M))LPQLF_ REV__ENST00000262348.8_1_1:68591699-68591852:-|nuORF 26.34127834903884 0.3999841173197873 1 ADA{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 7 -1 73.269 0 0 6.909 0 0 250.09466750312657 0 250.09466750312657 0 43.05207615846413 0 0 0 2.305462187404089 0 1.416386562212267 0 ADA{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 6.909 - 501 NaN NaN 152658.4 NaN 17543 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21544 86.834 NaN 711900 35 0 174060 0.261 + 504 ANFSPMEDGI 10 61 540.735602397306 1079.456651861412 2 540.7362060546875 MULTI HCD FTMS 0 0 0 21539 48671.3125 0.23704548571143308 6 -0.1248016357421875 5 Unmodified _ANFSPMEDGI_ SORCS3|p.I875M|1|0.09|ENSG00000156395|chr10:105217013-105217013|C/G|missense_variant 29.081581746732265 0.240155558137004 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}S 8 6 61.675 0 0 5.7135 0 0 0 179.0816100401453 179.0816100401453 42.52102256146955 0 0 0 0 1.75 0 0.7059771852360797 0.3494850021680094 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}S 5.7135 - 288 NaN NaN 198631.2 NaN 17544 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21545 86.837 NaN 64301 35 0 13128 0.262 + 5115 FEPRDQGG 8 36 453.2093811035156 NaN 0 453.2093811035156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FEPRDQGG_ ENST00000432460.1_3_2:219523811-219524039:-|nuORF 2.577480529830294 0.38822285293237185 1 G 1 7 1.5938 0 0 0.17636 0 0 718.6533947248063 125.02398096256094 843.6773756873672 0 0 0 0 0 0 0 0 0 + G 0.17636 + + 1 + NaN NaN 90916.2 NaN 17545 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21546 86.84 NaN 59319 35 0 7810.2 0.261 + 34974 YSRTAKWFCF 10 43 436.8795471191406 NaN 0 436.8795471191406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YSRTAKWFCF_ REV__ENSG00000121446|ENST00000294854|RGSL1;REV__nc|ENSG00000121446|A5PLK6-2|RGSL1;REV__nc|ENSG00000121446|A5PLK6-3|RGSL1 1.9063754702782614 0.33855269584400594 1 N 1 -1 2.4743 0 0 0.28383 0 0 435.8038170392594 318.88532434635005 754.6891413856094 0 0 0 0 0 0 0 0 0 N 0.28383 - 3 + NaN NaN 95126.6 NaN 17546 3998 21539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21548 86.845 NaN 902950 35 0 87461 0.327 + -1 NAFMFFSQPF 10 89 626.2790098975455 1250.543466861891 2 626.279052734375 MULTI HCD FTMS 0 0 0 21547 661456.4375 0.206477027995868 7 -0.1367950439453125 1 Oxidation (M) _NAFM(Oxidation (M))FFSQPF_ REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF 17.11289562659939 0.35104376501799556 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 N{[MS]|[{M(Oxidation (M))|F}A]} + + 71.407 2.9318 0.83726 5.7101 5.7101 62.827 0 0 0 16.344340914803936 0 0 0 0 2.973197507588033 0 0.6549471895720985 0 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 5.7101 - 1605 + NaN NaN 229958.2 NaN 17547 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21549 86.85 NaN 574810 35 0 131370 0.261 -1 HEWCFCACL 9 67 641.7436269031326 1281.4727008730652 2 641.7437744140625 MULTI HCD FTMS 0 0 0 21547 266917 0.21669353345155734 7 -0.1367950439453125 2 3 Carbamidomethyl (C) _HEWC(Carbamidomethyl (C))FC(Carbamidomethyl (C))AC(Carbamidomethyl (C))L_ ENST00000418448.1_1_13:57889915-57890026:+|nuORF 4.3292370932331545 0.3181982124262546 1 DE[WQ] 4 -1 19.107 0 0 1.491 0 0 705.2548796834152 0 705.2548796834152 0 6.588957563679063 0 0 0 0.7134679910804405 0 0 0 DE[WQ] 1.491 - 32 + NaN NaN 188959.2 NaN 17548 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21550 86.853 NaN 265370 35 0 35534 0.261 -1 ILNCYTCAYM 10 54 634.2616167544104 1266.5086805756207 2 634.2612915039062 MULTI HCD FTMS 0 0 0 21547 121077.671875 0.14975263377391576 7 -0.1367950439453125 3 Carbamidomethyl (C),Oxidation (M) _ILNC(Carbamidomethyl (C))YTCAYM(Oxidation (M))_ ENSG00000134940|ENST00000533904|ACRV1;nc|ENSG00000134940|P26436-10|ACRV1;nc|ENSG00000134940|P26436-2|ACRV1;nc|ENSG00000134940|P26436-3|ACRV1;nc|ENSG00000134940|P26436-4|ACRV1;nc|ENSG00000134940|P26436-5|ACRV1;nc|ENSG00000134940|P26436-6|ACRV1;nc|ENSG00000134940|P26436-7|ACRV1;nc|ENSG00000134940|P26436-9|ACRV1 9.38312468134398 0.42334543440173333 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDN 6 -1 33.681 0 0 2.6593 0 0 0 573.2076510065061 573.2076510065061 12.711484792255838 0 0 0 0 0.5 0 0.4247425010840047 0.3252574989159953 {[QG]|[NA]}{M(Oxidation (M))|F}EDN 2.6593 - 60 + NaN NaN 122383.1 NaN 17549 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21551 86.856 NaN 310250 35 0 25922 0.261 + 8227 GRRLETRPPI 10 93 597.85630626873 1193.69805960426 2 597.8561401367188 MULTI HCD FTMS 0 0 0 21547 243109.59375 0.47692186402929737 -4 0.094329833984375 4 Unmodified _GRRLETRPPI_ REV__ENSG00000155629|ENST00000339364|PIK3AP1;REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF;REV__nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 2.9952420565917617 0.4594494122822477 1 W 1 -1 13.099 0 0 1.0973 0 0 989.608671642149 0 989.608671642149 0 6.109243748081781 0 0 0 0 0 0 0 W 1.0973 - 143 + NaN NaN 123450.8 NaN 17550 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21552 86.86 NaN 696540 35 0 105530 0.261 -1 LMSLDITEH 9 83 537.7596355128807 1073.5047180925612 2 537.7598266601562 MULTI HCD FTMS 0 0 0 21547 210476.3125 0.5709464239227027 -4 0.094329833984375 5 Oxidation (M) _LM(Oxidation (M))SLDITEH_ ENSG00000165392|ENST00000298139|WRN;WRN|p.L690*|1|0.52|ENSG00000165392|chr8:31100933-31100933|C/-|frameshift_variant 25.399314129420986 0.14091189997036632 1 C{I|L}PD{I|L}YG{M(Oxidation (M))|F} 8 -1 70.047 0 0 6.5251 0 0 147.08145256237816 0 147.08145256237816 0 56.10633325897812 0 0 0 2.2302046884880937 0 0.8807196863200843 0 C{I|L}PD{I|L}YG{M(Oxidation (M))|F} 6.5251 - 942 + NaN NaN 202654.2 NaN 17551 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21553 86.863 NaN 403890 35 0 43652 0.261 + -1 MMMKMWTM 8 69 553.224410244241 1104.4342675552818 2 553.224609375 MULTI HCD FTMS 0 0 0 21547 86570.546875 0.40266400710250727 -5 0.117034912109375 6 Oxidation (M) _MMMKM(Oxidation (M))WTM_ REV__ENST00000445215.5_1_22:42995765-42998001:-|nuORF 4.75600775471527 0.5349361699807423 1 {I|L}TM 3 -1 11.928 0 0 1.08 0 0 741.25505110196 0 741.25505110196 0 0.4746734669325132 0 0 0 0.899649864804614 0 0 0 {I|L}TM 1.08 - 61 + NaN NaN 141785.1 NaN 17552 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21554 86.866 NaN 195630 35 0 49947 0.261 -1 0 52 593.1556303376746 592.1483538710745 1 593.7857055664062 MULTI HCD FTMS 0 0 0 21547 33627.32421875 0.3418996550976106 -1 0.0260772705078125 7 NaN NaN 1 R[QP] 3 -1 1.4609 0 0 0.24671 0 0 192.93477462478387 0 192.93477462478387 0 1.460872158338839 0 0 0 0 0 0 0 R[QP] 0.24671 - 25 + NaN NaN 104852.8 NaN 17553 3999 21547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21556 86.871 NaN 2081500 35 0 354080 0.327 + 18916 NAFEELVAF 9 88 520.258389761945 1038.5022265906898 2 520.2584228515625 MULTI HCD FTMS 0 0 0 21555 1936090.5 0.19206397216948537 -7 0.17566680908203125 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 134.295615338601 0.00034446139420701925 1 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 93.585 0 0 9.0116 9.0116 90.462 0 0 0 5.0565842292838425 13.455612550363796 5.0565842292838425 5.0565842292838425 0 3.2302046884880937 0 0.6989700043360187 1.524227503252014 + + {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NEE{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}GGEE{I|L}VA{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}EV{I|L}EA{M(Oxidation (M))|F};{[QG]|[NA]}V[{M(Oxidation (M))|F}E]{I|L}EA{M(Oxidation (M))|F} 9.0116;8.5246;6.1703;5.5002;2.7341 +;-;-;-;- + 496 NaN NaN 402755.7 NaN 17554 4000 21555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21557 86.876 NaN 249610 35 0 34838 0.261 + 3629 ELDQQIEQPF 10 57 623.8011571336598 1245.5877613341195 2 623.8004760742188 MULTI HCD FTMS 0 0 0 21555 151554.640625 0.14906407800961535 8 -0.14286041259765625 2 Unmodified _ELDQQIEQPF_ REV__ENST00000430010.1_1_2:55451487-55451931:+|nuORF 2.9952420565917617 0.4594494122822477 1 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 -1 40.556 0 0 3.256 0 0 148.12123463412905 0 148.12123463412905 0 29.82061891068248 0 0 0 0 0 1 0 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 3.256 - 135 + NaN NaN 119839.8 NaN 17555 4000 21555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21558 86.879 NaN 358320 35 0 44587 0.262 + 20641 PFFQSYIE 8 58 515.746664664807 1029.4787763964139 2 515.7466430664062 MULTI HCD FTMS 0 0 0 21555 160512.765625 0.5999990771776214 -7 0.17566680908203125 3 Unmodified _PFFQSYIE_ REV__ENSG00000185774|ENST00000382152|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-2|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-3|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-4|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-5|KCNIP4 20.453626601364224 0.4433031943603284 1 {I|L}M{M(Oxidation (M))|F}QD{I|L} 6 -1 63.269 0 0 6.1457 0 0 0 279.0952242486938 279.0952242486938 35.22160958700539 0 0 0 0 1.2614393726401687 2 0.805462187404089 0 {I|L}M{M(Oxidation (M))|F}QD{I|L} 6.1457 - 204 + NaN NaN 152521 NaN 17556 4000 21555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21560 86.884 NaN 3801600 35 0 835480 0.327 + 18905 NAFEDSFSSIL 11 98 615.2882252766974 1228.5618976201947 2 615.2881469726562 MULTI HCD FTMS 0 0 0 21559 3019801.5 0.11019682080979698 9 -0.16869354248046875 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 190.03143192339053 2.41502504821315E-14 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 122.15 0 0 9.9427 9.9427 91.925 0 0 0 6.787887749990347 15.07062321345802 6.787887749990347 6.787887749990347 0 3.524227503252014 0 1.9436726795685342 1.1791746928241125 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MG]|[TS]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[{M(Oxidation (M))|F}D]|MM}SS{I|L}{I|L};[YN][DP]SS{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}E]SS{I|L}{I|L};{[WT]|[RM]}{I|L}C[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]SS{I|L}{I|L} 9.9427;9.3902;7.9424;7.8976;6.6426;6.4578;5.7165;5.5119;5.3335;4.9363 +;-;-;-;-;-;-;-;-;- + 3838 NaN NaN 529206.6 NaN 17557 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21561 86.888 NaN 2027100 35 0 442830 0.261 + 27250 SYPDLLPTF 9 52 526.7686078377452 1051.5226627422903 2 526.7684936523438 MULTI HCD FTMS 0 0 0 21559 1064439.25 0.5863288349512691 -2 0.03863525390625 2 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 115.6920309560759 0.002013163348980568 1 [TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}PT{M(Oxidation (M))|F} 9 5 + 72.871 0 0 6.93 6.93 88.261 0 0 0 7.900990676322905 11.623855178835925 7.900990676322905 7.900990676322905 0 1.805462187404089 1.5228787452803376 0.8494850021680094 0 [TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[DP]{I|L}{I|L}PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[DP]{I|L}PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP]PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{[ET]|[MV]}PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[RP][RN]{M(Oxidation (M))|F} 6.93;6.1786;6.1004;6.1004;5.7643;2.8175 -;+;-;-;-;- + 293 NaN NaN 389336.8 NaN 17558 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21562 86.892 NaN 548870 35 0 63254 0.261 + 26672 SYADQMFLL 9 76 544.2602658216128 1086.5059787100256 2 544.2600708007812 MULTI HCD FTMS 0 0 0 21559 299677.53125 0.3219148021954044 6 -0.12079620361328125 3 Unmodified _SYADQMFLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 118.0683919894846 0.0016252157255221692 1 {[{M(Oxidation (M))|F}C]|[YS]}ADQM{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.957 0 0 8.9237 8.9237 95.914 0 0 0 4.137342758552705 88.76922875713856 4.137342758552705 20.150064313529 0 2.5994850021680094 0 1.4436726795685342 1.0941876774005248 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQM{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]M{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]QD[CS]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]QDA[MT];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV][AG]DA[MT] 8.9237;7.0692;3.5584;2.2184;1.3709 +;-;-;-;- + 283 NaN NaN 167560.9 NaN 17559 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21563 86.895 NaN 483370 35 0 33803 0.261 + -1 MKVWLIGLFV 10 91 611.3563383987387 1220.6981238642772 2 611.356201171875 MULTI HCD FTMS 0 0 0 21559 359952.28125 0.5016350156302669 -6 0.132965087890625 4 Oxidation (M) _M(Oxidation (M))KVWLIGLFV_ REV__ENSG00000161904|ENST00000293760|LEMD2;REV__LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant 3.5964929083625545 0.45626689593999237 1 {[HG]|PP}N 3 -1 9.0411 0 0 0.74065 0 0 0 909.4953233783593 909.4953233783593 2.575156255085389 0 0 0 0 0.6109243748081782 0 0 0 {[HG]|PP}N 0.74065 - 34 + NaN NaN 154593.8 NaN 17560 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21564 86.898 NaN 339340 35 0 77421 0.261 + 21555 PYLSEVLTF 9 57 534.7843336502427 1067.5541143672854 2 534.784423828125 MULTI HCD FTMS 0 0 0 21559 146656.796875 0.5400654451466791 1 -0.02593994140625 5 Unmodified _PYLSEVLTF_ ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;nc|ENSG00000196497|Q8TEX9-2|IPO4 74.42276476219924 0.007657080072768255 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}V{I|L}T{M(Oxidation (M))|F} 9 0 + 66.136 0 0 6.1951 6.1951 85.054 0 0 0 3.5387196432176182 9.70840679883402 3.5387196432176182 3.5387196432176182 0 1.9247425010840047 1.5228787452803376 0.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}V{I|L}T{M(Oxidation (M))|F};[{I|L}T][YV]PD{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[TV]|[{I|L}S]}D{I|L}T{M(Oxidation (M))|F};[{I|L}T][YV]P{I|L}DT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[TV]|[{I|L}S]}{I|L}DT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}V[{M(Oxidation (M))|F}T]{I|L};[{I|L}T][YV]PD[{M(Oxidation (M))|F}T]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[TV]|[{I|L}S]}D[{M(Oxidation (M))|F}T]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[R{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F}{I|L} 6.1951;5.8636;5.4448;5.1133;4.6944;3.0097;2.6782;2.2593;2.2116 +;-;-;-;-;-;-;-;- + 603 NaN NaN 132964.5 NaN 17561 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21565 86.902 NaN 510320 35 0 36479 0.261 + 648 APLAARTRT 9 79 478.78584162479757 955.5571303163952 2 478.7859191894531 MULTI HCD FTMS 0 0 0 21559 296316.0625 0.439888000164782 -2 0.03863525390625 6 Unmodified _APLAARTRT_ REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF 10.823927491677226 0.26684000660059787 1 A 1 -1 8.0989 0 0 0.84756 0 0 105.0805688178237 776.4260874752272 881.5066562930509 0 0 0 0 0 0.5 0 0 0 A 0.84756 + + 37 + NaN NaN 161632.6 NaN 17562 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21566 86.905 NaN 108320 35 0 14748 0.261 + 2941 DYTQTSDPGRH 11 41 426.1913881964687 NaN 0 426.19183349609375 PEAK HCD FTMS 0 0 0 21559 111515.1328125 0.6147760618565475 1 -0.02593994140625 7 Unmodified _DYTQTSDPGRH_ ENSG00000137824|ENST00000338376|RMDN3 4.406150317652783 0.32962116392221075 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96354.9 NaN 17563 4001 21559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21568 86.91 NaN 1949300 35 0 68133 0.327 + 398 AKFRKQERA 9 142 567.3304148038226 1132.646276674445 2 567.3301391601562 MULTI HCD FTMS 0 0 0 21567 2236758.5 0.5782844697632442 16 -0.34166717529296875 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 1 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 7 8 16.213 0 0 1.4314 0 0 286.14184345620447 0 286.14184345620447 0 0.19955740326609117 0 0 0 1.064909327626439 0 0.7059771852360797 0 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 1.4314 - 699 NaN NaN 375661.7 NaN 17564 4002 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21569 86.914 NaN 918560 35 0 134310 0.261 + 22825 QYLPYISYL 9 83 580.3053604351962 1158.5961679371924 2 580.3055419921875 MULTI HCD FTMS 0 0 0 21567 497675.5625 0.28067882973119607 7 -0.126678466796875 2 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 62.57269311338072 0.013982455292112035 1 [YQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SY{I|L} 9 0 + 63.879 0 0 5.5135 5.5135 84.114 0 0 0 4.005149978319906 9.769987279362624 4.005149978319906 4.005149978319906 0 1.8494850021680094 0 1.3807196863200843 0.3494850021680094 + + [YQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SY{I|L} 5.5135;5.1678 +;- + 1605 NaN NaN 228106.3 NaN 17565 4002 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21570 86.918 NaN 552440 35 0 159230 0.261 -1 MFMVDCTF 8 68 546.7139680382995 1091.413383143399 2 546.7142944335938 MULTI HCD FTMS 0 0 0 21567 129917.4765625 0.22489617910770077 -5 0.11009979248046875 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MFMVDC(Carbamidomethyl (C))TF_ ENST00000373068.6_3_9:130870893-130871202:+|nuORF 9.347437153973935 0.5250182646323369 1 {I|L}VA{M(Oxidation (M))|F} 4 -1 45.226 0 0 4.1438 0 0 643.1510368072646 0 643.1510368072646 0 38.2363868126899 0 0 0 1.8494850021680094 0 0 0 {I|L}VA{M(Oxidation (M))|F} 4.1438 - 57 + NaN NaN 169283.5 NaN 17566 4002 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21572 86.922 NaN 3491500 35 0 816860 0.327 + 10688 IPVWDQEFL 9 98 573.7951807712552 1145.5758086093103 2 573.7952270507812 MULTI HCD FTMS 0 0 0 21571 4077175 1 0 0 1 Unmodified _IPVWDQEFL_ ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 103.35351024395868 0.004027461563756449 1 [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L} 9 0 + 83.184 0 0 7.2613 7.2613 88.839 0 0 0 5.6424927368725974 77.62095163696225 5.6424927368725974 7.7815125038364386 0 2.305462187404089 0 0.6307196863200843 0.6989700043360187 + + [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L};[VP]{I|L}WDQE{M(Oxidation (M))|F}{I|L};[{I|L}P]VWDQE{I|L}{M(Oxidation (M))|F};[{I|L}P]VWD[AG]E{M(Oxidation (M))|F}{I|L};[VP]W{I|L}DQE{M(Oxidation (M))|F}{I|L};[VP]{I|L}WDQE{I|L}{M(Oxidation (M))|F};[VP]{I|L}WD[AG]E{M(Oxidation (M))|F}{I|L};[{I|L}P]VWD[AG]E{I|L}{M(Oxidation (M))|F};[VP]W{I|L}DQE{I|L}{M(Oxidation (M))|F};[VP]W{I|L}D[AG]E{M(Oxidation (M))|F}{I|L} 7.2613;6.5821;5.8567;5.8474;5.8333;5.1774;5.1681;4.7478;4.4286;4.4193 +;-;-;-;-;-;-;-;-;- + 798 NaN NaN 537211.4 NaN 17567 4003 21571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21573 86.927 NaN 1847800 35 0 244930 0.261 -1 0 97 588.3110497572728 1174.6075465813456 2 588.31103515625 MULTI HCD FTMS 0 0 0 21571 1720710.125 0.8833716418939116 3 -0.05957794189453125 2 NaN NaN 1 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L} 8 -1 74.268 0 0 6.3228 0 0 0 162.05713301404094 162.05713301404094 47.79896425243189 0 0 0 0 2.7302046884880937 2 1.2803695511246984 0.3807196863200844 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L} 6.3228 - 1542 NaN NaN 368848.3 NaN 17568 4003 21571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21574 86.93 NaN 1790900 35 0 577870 0.261 + 6310 FPFQDIEL 8 56 504.7554588418199 1007.4963647504399 2 504.7554016113281 MULTI HCD FTMS 0 0 0 21571 2246661 0.8330675760722241 -1 0.01264190673828125 3 Unmodified _FPFQDIEL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 74.92900055777586 0.024005273830084817 1 DQME{I|L} 5 5 61.587 0 0 6.1128 0 0 373.2199879376969 0 373.2199879376969 0 36.48780322035236 0 0 0 1.805462187404089 0 1.1861818737241734 0.4247425010840047 DQME{I|L} 6.1128 - 385 NaN NaN 358646.3 NaN 17569 4003 21571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21575 86.934 NaN 929850 35 0 193800 0.261 + -1 DDEGLCFTVL 10 92 584.7650846775917 1167.5156164219834 2 584.7859497070312 MULTI HCD FTMS 0 0 0 21571 48880.93359375 0.39402347883268846 -5 0.10329437255859375 4 Carbamidomethyl (C) _DDEGLC(Carbamidomethyl (C))FTVL_ REV__ENSG00000131037|ENST00000201647|EPS8L1;REV__nc|ENSG00000131037|Q8TE68-3|EPS8L1 6.723162845929126 0.4397169348982109 1 PCC{I|L}A{M(Oxidation (M))|F}SA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 10 -1 37.375 0 0 3.2012 0 0 113.04222407581172 0 113.04222407581172 0 11.995557461415416 0 0 0 0.2742275032520141 0 1.4489700043360187 0 PCC{I|L}A{M(Oxidation (M))|F}SA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3.2012 - 1006 + NaN NaN 228478.1 NaN 17570 4003 21571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21576 86.937 NaN 276340 35 0 193010 0.261 -1 0 38 507.4157711514141 506.4084946848141 1 507.4150085449219 MULTI HCD FTMS 0 0 0 21571 178220.046875 0.08557732718817668 11 -0.23114013671875 5 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 126326.2 NaN 17571 4003 21571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21578 86.943 NaN 847400 35 0 241750 0.327 + 28409 TPFLYDLVM 9 70 557.7783515620231 1113.542150190846 2 557.7781982421875 MULTI HCD FTMS 0 0 0 21577 792444.125 0.5412025925602788 15 -0.33367919921875 1 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 78.14939416004806 0.006451203201226903 1 YD{I|L}V{M(Oxidation (M))|F} 5 4 66.37 0 0 5.9603 0 0 458.25154311347814 0 458.25154311347814 0 53.974315640635595 0 0 0 2.274227503252014 0 0.805462187404089 0 + YD{I|L}V{M(Oxidation (M))|F} 5.9603 + + 1169 NaN NaN 211121.2 NaN 17572 4004 21577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21579 86.948 NaN 767530 35 0 182250 0.261 + 21037 PLSLCPIRRL 10 100 584.3565847607532 NaN 0 584.3565673828125 PEAK HCD FTMS 0 0 0 21577 214518.625 0.48626174818021856 -5 0.098724365234375 2 Unmodified _PLSLCPIRRL_ ENST00000504875.5_1_5:149433032-149433299:-|nuORF 9.38312468134398 0.33215363477037435 1 PVW[SG]{I|L}C 7 8 21.771 0 0 1.866 0 0 112.22481395334383 309.09104334049067 421.3158572938345 0 0 0 0 0 0 0 0.3054621874040891 0 PVW[SG]{I|L}C 1.866 - 337 + NaN NaN 206792.8 NaN 17573 4004 21577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21580 86.951 NaN 398920 35 0 42085 0.261 -1 LYPVTVNMLF 10 58 606.8205422829603 1211.6265316327206 2 606.8209838867188 MULTI HCD FTMS 0 0 0 21577 66217.8125 0.13324574245842943 15 -0.33367919921875 3 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 29.081581746732265 0.240155558137004 1 V 1 -1 10.485 0 0 0.86533 0 0 739.3586413250114 370.17612634830317 1109.5347676733145 0 0 0 0 0 0.5 0 0 0 V 0.86533 + + 25 + NaN NaN 138906.8 NaN 17574 4004 21577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21581 86.955 NaN 180070 35 0 26500 0.261 + 5512 FLCYEHVCW 9 54 600.2529907226562 NaN 0 600.2529907226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FLCYEHVCW_ REV__ENST00000359943.7_1_7:120990385-120990445:-|nuORF 2.302733041254933 0.2840881193086663 1 {I|L}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.78966 0 0 406.016545799025 529.2980440729124 935.3145898719374 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.78966 - 26 + NaN NaN 111852.2 NaN 17575 4004 21577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21583 86.959 NaN 1095600 35 0 37243 0.327 + 15846 LPKHERSKR 9 114 575.8429679130824 NaN 0 575.8429565429688 PEAK HCD FTMS 0 0 0 21582 1032391.8125 0.601149268922974 2 -0.04529571533203125 1 Unmodified _LPKHERSKR_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000517937.1_1_6:56599965-56716690:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;ENST00000524302.1_1_6:56716117-56716639:-|nuORF;nc|ENSG00000151914|Q03001-11|DST 11.640296217721598 0.23883959125015683 1 D[RV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K 6 7 9.7017 0 0 0.84387 0 0 105.07828690543131 283.1186617486938 388.1969486541251 0 0 0 0 0 0.9119543704721594 0 0.8609243748081782 0.8494850021680094 D[RV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K 0.84387 - 586 + NaN NaN 266580.2 NaN 17576 4005 21582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21584 86.964 NaN 1617600 35 0 160290 0.261 + -1 CHMLPQLF 8 108 531.2496242591615 1060.4846955851228 2 531.2498168945312 MULTI HCD FTMS 0 0 0 21582 795239.4375 0.6347138093091664 -4 0.07550048828125 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))HM(Oxidation (M))LPQLF_ REV__ENST00000262348.8_1_1:68591699-68591852:-|nuORF 34.18733598223924 0.30560024141787767 1 NA{M(Oxidation (M))|F}EE{I|L}V 7 -1 76.533 0 0 7.2168 0 0 0 255.07496949252516 255.07496949252516 0.8491696617305422 0 0 0 0 2.385151878060192 1.5228787452803376 0.3252574989159953 0 NA{M(Oxidation (M))|F}EE{I|L}V 7.2168 - 2582 + NaN NaN 330489 NaN 17577 4005 21582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21585 86.967 NaN 1159500 35 0 345920 0.261 + 5829 FPDASFQVVL 10 65 561.7953064240825 1121.5760599149648 2 561.7953491210938 MULTI HCD FTMS 0 0 0 21582 786812.8125 0.6536795356691113 2 -0.04529571533203125 3 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 61.60191391372663 0.03559593591905874 1 S{M(Oxidation (M))|F}QVV{I|L} 6 4 70.068 0 0 6.2473 0 0 430.1858082501969 0 430.1858082501969 0 64.58342832424712 0 0 0 2 0 0.805462187404089 0.3252574989159953 + S{M(Oxidation (M))|F}QVV{I|L} 6.2473 + + 159 NaN NaN 273233.2 NaN 17578 4005 21582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21586 86.971 NaN 675640 35 0 41768 0.262 + 12233 KLERHSGI 8 87 470.27217946135937 938.5298059895188 2 470.2715759277344 MULTI HCD FTMS 0 0 0 21582 845581.625 1 0 0 4 Unmodified _KLERHSGI_ REV__ENSG00000183495|ENST00000389561|EP400;REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;REV__nc|ENSG00000183495|Q96L91-3|EP400;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__nc|ENSG00000183495|Q96L91-5|EP400;REV__nc|ENSG00000183495|Q96L91|EP400 11.640296217721598 0.50814828952472 1 Q[{M(Oxidation (M))|F}V] 3 -1 10.546 0 0 1.1237 0 0 546.3249378888687 0 546.3249378888687 0 0.45757490560674974 0 0 0 0.6989700043360187 0 0 0 Q[{M(Oxidation (M))|F}V] 1.1237 - 39 NaN NaN 192924.9 NaN 17579 4005 21582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21587 86.974 NaN 342970 35 0 66059 0.261 + 5964 FPDQLYDAVF 10 50 607.7901237196654 1213.5656945061307 2 607.7904663085938 MULTI HCD FTMS 0 0 0 21582 199251.359375 0.30008342130417737 -14 0.30921173095703125 5 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 14.405379775768559 0.37636895476610294 1 DAV{M(Oxidation (M))|F} 4 6 40.037 0 0 3.2991 0 0 763.3542072791843 0 763.3542072791843 0 29.579569145996345 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 3.2991 + + 21 NaN NaN 146845.7 NaN 17580 4005 21582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21588 86.977 NaN 101130 35 0 6666.6 0.261 + 33862 YLLLFRIIGM 10 49 619.8696821960666 1237.7248114589331 2 620.871826171875 MULTI HCD FTMS 0 0 0 21582 49600.6640625 0.3754363217951444 1 -0.0226593017578125 6 Unmodified _YLLLFRIIGM_ REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF;REV__nc|ENSG00000188580|Q5VXU1-3|NKAIN2 0.45834013312273997 0.47287763746706196 1 DKQC(Carbamidomethyl (C)) 4 -1 12.256 0 0 0.99017 0 0 104.07641884029597 599.3720797174436 703.4484985577396 0 0 0 0 0 0 0 0 0.5 DKQC(Carbamidomethyl (C)) 0.99017 - 20 + NaN NaN 99510.5 NaN 17581 4005 21582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21590 86.982 NaN 345410 35 0 47721 0.326 + 6883 FPVAEDISLL 10 61 552.3029746327761 1102.5913963323521 2 552.3038330078125 MULTI HCD FTMS 0 0 0 21589 161639.390625 0.7010006937554286 5 -0.10655975341796875 1 Unmodified _FPVAEDISLL_ ENSG00000100325|ENST00000307790|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-2|ASCC2;nc|ENSG00000100325|Q9H1I8-3|ASCC2 30.636539890814138 0.2266618088935899 1 {[TV]|[{I|L}S]}{[YD]|[{M(Oxidation (M))|F}M]}S[VP]P{I|L}{I|L} 10 8 + 46.132 0 0 4.1839 4.1839 89.628 0 0 0 2.9833247972062793 25.674100046527357 2.9833247972062793 46.131674952134105 0 0.5 1.6989700043360187 0.9247425010840047 0 {[TV]|[{I|L}S]}{[YD]|[{M(Oxidation (M))|F}M]}S[VP]P{I|L}{I|L} 4.1839 - 136 NaN NaN 147168.2 NaN 17582 4006 21589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21591 86.986 NaN 215370 35 0 19335 0.261 + -1 NAFMFFSQPF 10 53 626.2790098975455 1250.543466861891 2 626.2791137695312 MULTI HCD FTMS 0 0 0 21589 88843.390625 0.027732921192298414 14 -0.325042724609375 2 Oxidation (M) _NAFM(Oxidation (M))FFSQPF_ REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF 8.745405648335112 0.42901288225909884 1 {[QG]|[NA]}{M(Oxidation (M))|F}E 4 -1 31.145 0 0 2.4905 0 0 0 786.329261669312 786.329261669312 -1.6345047489141429 0 -1.6345047489141429 0 0 0.8252574989159953 0 0.6694451763165201 0 {[QG]|[NA]}{M(Oxidation (M))|F}E 2.4905 - 49 + NaN NaN 119482.3 NaN 17583 4006 21589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21592 86.99 NaN 121470 35 0 42354 0.263 + 3659 ELKYDYGI 8 38 500.7528227546679 999.4910925761358 2 500.7518310546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ELKYDYGI_ REV__ENSG00000068366|ENST00000672401|ACSL4;REV__nc|ENSG00000068366|O60488|ACSL4 7.289230182591677 0.5311777711368266 1 WE{I|L} 3 -1 24.693 0 0 2.4705 0 0 553.2762449278281 0 553.2762449278281 0 12.730012720637374 0 0 0 0 0 0 0 WE{I|L} 2.4705 - 11 NaN NaN 100776.4 NaN 17584 4006 21589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21593 86.993 NaN 229050 35 0 16003 0.261 + 29034 TYFDLWIML 9 55 601.3032067421717 1200.5918605511433 2 601.3073120117188 MULTI HCD FTMS 0 0 0 21589 28457.2578125 0.0036662163947970526 37 -0.9496002197265625 4 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 16.942295170755138 0.21397866736869717 1 [YV]{I|L}[YT][WP]{M(Oxidation (M))|F}{I|L} 9 -1 + 59.868 0 0 4.9865 4.9865 87.756 0 0 0 15.482099529372277 46.28408088201809 15.482099529372277 11.989700043360187 0 1.4247425010840047 1.5228787452803376 0.4247425010840047 0 [YV]{I|L}[YT][WP]{M(Oxidation (M))|F}{I|L};[YV][YT]{I|L}[WP]{M(Oxidation (M))|F}{I|L} 4.9865;3.9879 -;- 215 NaN NaN 115211.4 NaN 17585 4006 21589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21594 86.997 NaN 172710 35 0 46220 0.262 + 4853 FADGHRRY 8 48 511.25240904240826 NaN 0 511.2524719238281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FADGHRRY_ ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 21.74664581756881 0.38360090182421286 1 A 1 7 13.227 0 0 1.2961 0 0 784.3744337080603 162.05588709049064 946.430320798551 0 0 0 0 0 0.7742275032520141 0 0 0 + A 1.2961 + + 15 + NaN NaN 116158.6 NaN 17586 4006 21589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21595 87 NaN 176650 35 0 39408 0.261 + 18027 MLLRKTGR 8 62 487.8006575403396 NaN 0 487.8011169433594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MLLRKTGR_ ENST00000508237.5_1_17:47394735-47394825:-|nuORF 2.8892196856762586 0.38822285293237185 1 {I|L} 1 7 3.0989 0 0 0.3183 0 0 503.405745157048 354.07612024478755 857.4818654018355 0 0 0 0 0 0 0 0 0 + {I|L} 0.3183 + + 9 + NaN NaN 106509.2 NaN 17587 4006 21589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21597 87.005 NaN 10485000 35 0 1953500 0.327 + 18917 NAFEELVAF 9 69 520.258389761945 1038.5022265906898 2 520.2584228515625 MULTI HCD FTMS 0 0 0 21596 10080446 1 0 0 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 160.51597146486608 8.986712039288196E-09 1 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 111.33 0 0 10.72 10.72 96.34 0 0 0 14.564404002582023 15.598943791441968 14.564404002582023 14.564404002582023 0 3.2302046884880937 1.154901959985743 1.055462187404089 1.610924374808178 + + {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NEE{I|L}VA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[QG]|[NA]}E{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}GGEE{I|L}VA{M(Oxidation (M))|F};[YT][{I|L}V]TE[WQ] 10.72;9.3175;7.8963;6.8796;2.6084 +;-;-;-;- + 454 NaN NaN 620906.2 NaN 17588 4007 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21598 87.009 NaN 959020 35 0 175920 0.261 -1 PREQQCGFF 9 96 584.7650846775917 1167.5156164219834 2 584.765625 MULTI HCD FTMS 0 0 0 21596 123766.7578125 0.9976693342730979 -1 0.02263641357421875 2 Carbamidomethyl (C) _PREQQC(Carbamidomethyl (C))GFF_ ENSG00000177302|ENST00000321105|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;nc|ENSG00000177302|Q13472-3|TOP3A 10.823927491677226 0.26684000660059787 1 [Y{I|L}]GS{M(Oxidation (M))|F}A{I|L}CCP 10 -1 65.359 0 0 5.5981 0 0 0 110.01925755369749 110.01925755369749 25.573193899842437 0 0 0 0 0.4247425010840047 2 1.6989700043360187 0 [Y{I|L}]GS{M(Oxidation (M))|F}A{I|L}CCP 5.5981 - 2056 NaN NaN 244495.9 NaN 17589 4007 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21600 87.014 NaN 1658400 35 0 346530 0.327 + 18906 NAFEDSFSSIL 11 90 615.2882252766974 1228.5618976201947 2 615.2877197265625 MULTI HCD FTMS 0 0 0 21599 1042769.1875 0.038052120081705734 16 -0.4044189453125 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 132.21981990298983 0.006931515308163418 1 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 103.98 0 0 8.4632 8.4632 89.423 0 0 0 4.516675202793721 15.070623213458035 4.516675202793721 4.516675202793721 0 3.336696871556164 0 1.620371515030528 0.3494850021680094 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};[Y{I|L}]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}HCSS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[WQ]{M(Oxidation (M))|F}SS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AWTACSS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[WK]DCSS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}VCV[{M(Oxidation (M))|F}V][DC]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AW[KC]MS{I|L}{I|L} 8.4632;8.0955;5.583;4.3887;3.6267;2.9922;2.8909;2.1937;1.4624;1.45 +;-;-;-;-;-;-;-;-;- + 2443 NaN NaN 347444.2 NaN 17590 4008 21599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21601 87.018 NaN 509500 35 0 27894 0.261 + 33694 YKTLKERQR 9 88 611.3563383987387 1220.6981238642772 2 611.3563232421875 MULTI HCD FTMS 0 0 0 21599 532432.8125 0.7420065273457812 1 -0.0224609375 2 Unmodified _YKTLKERQR_ ENSG00000180999|ENST00000367727|C1orf105 6.630372943996041 0.3007538891620783 1 M{[MG]|[TS]}{[HG]|PP}[{M(Oxidation (M))|F}V] 7 8 9.2952 0 0 0.76146 0 0 443.30345351386876 0 443.30345351386876 0 0.3157537239079762 0 0 0 0.5796896906561032 0 0.3252574989159953 0 M{[MG]|[TS]}{[HG]|PP}[{M(Oxidation (M))|F}V] 0.76146 - 45 NaN NaN 163180.5 NaN 17591 4008 21599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21602 87.022 NaN 939160 35 0 188880 0.261 + 27251 SYPDLLPTF 9 60 526.7686078377452 1051.5226627422903 2 526.7685546875 MULTI HCD FTMS 0 0 0 21599 569984.125 0.31396637051101656 5 -0.1167755126953125 3 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 96.28474662873226 0.004361282420133734 1 [TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}PT{M(Oxidation (M))|F} 9 5 + 70.555 0 0 6.7098 6.7098 87.659 0 0 0 7.402953031565858 11.967036358040986 7.402953031565858 7.402953031565858 0 1.75 1.5228787452803376 0.8494850021680094 0 [TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[DP]{I|L}PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP]PT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{I|L}{[HG]|PP}C{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{[ET]|[MV]}PT{M(Oxidation (M))|F} 6.7098;6.0058;5.9342;5.2914;5.2578 -;-;-;-;- 273 NaN NaN 232257.2 NaN 17592 4008 21599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21603 87.025 NaN 865210 35 0 163350 0.261 + -1 YSINCHHF 8 95 539.2320809862925 1076.449609039385 2 539.232666015625 MULTI HCD FTMS 0 0 0 21599 265501.4375 0.7952863811127246 4 -0.09066009521484375 4 Carbamidomethyl (C) _YSINC(Carbamidomethyl (C))HHF_ REV__ENST00000217909.7_1_X:118540464-118544252:+|nuORF 18.13498045792455 0.4603629008820478 1 ENAE 4 -1 39.06 0 0 3.6286 0 0 615.2551718061877 0 615.2551718061877 0 3.8000189974028586 0 0 0 0.6109243748081782 0 1.1237125054200234 0.4247425010840047 ENAE 3.6286 - 812 NaN NaN 231687 NaN 17593 4008 21599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21604 87.028 NaN 421590 35 0 18163 0.261 + -1 CLIRFIILF 9 86 597.85630626873 1193.69805960426 2 598.3579711914062 MULTI HCD FTMS 0 0 0 21599 119047.953125 0.5341990893386774 4 -0.09066009521484375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))LIRFIILF_ REV__ENSG00000183873|ENST00000423572|SCN5A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;REV__SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant 5.230669730166228 0.3113646817964458 1 [RV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 6 -1 14.922 0 0 1.25 0 0 0 415.19831262760005 415.19831262760005 9.436974992327125 0 0 0 0 0 0 0 0 [RV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 1.25 - 164 + NaN NaN 156956.9 NaN 17594 4008 21599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21605 87.032 NaN 364060 35 0 92210 0.261 + -1 YVLFSVCLIM 10 60 602.3135428996179 NaN 0 602.332275390625 PEAK HCD FTMS 0 0 0 21599 20796.08984375 0.46844770332730973 -9 0.168792724609375 6 Oxidation (M) _YVLFSVCLIM(Oxidation (M))_ REV__ENSG00000086717|ENST00000470157|PPEF1;REV__nc|ENSG00000086717|O14829-2|PPEF1;REV__nc|ENSG00000086717|O14829-3|PPEF1;REV__nc|ENSG00000086717|O14829-4|PPEF1;REV__nc|ENSG00000086717|O14829-5|PPEF1 11.640296217721598 0.3302218087712401 1 T 1 -1 9.2082 0 0 0.76568 0 0 165.05791968419823 933.4590665846082 1098.5169862688065 0 0 0 0 0 0.3494850021680094 0 0.3494850021680094 0 T 0.76568 - 151 + NaN NaN 138374.5 NaN 17595 4008 21599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21607 87.036 NaN 917360 35 0 52911 0.327 -1 0 124 589.3430503555608 1176.6715477779214 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21606 549610.6875 0.40099132342347343 32 -0.8328323364257812 1 NaN NaN 1 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K 5 -1 35.674 0 0 3.0318 0 0 0 473.3268571863777 473.3268571863777 16.21071297438677 0 0 0 0 0 2 0 0.4247425010840047 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K 3.0318 - 796 NaN NaN 224849.6 NaN 17596 4009 21606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21608 87.041 NaN 673870 35 0 106090 0.261 -1 SMDPLPVFL 9 60 517.7654208287132 1033.5162887242263 2 517.7650146484375 MULTI HCD FTMS 0 0 0 21606 266965.71875 0.5950553770686472 1 -0.01607513427734375 2 Oxidation (M) _SM(Oxidation (M))DPLPVFL_ ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 36.04419817259434 0.08350412372117409 1 {M(Oxidation (M))|F}[VP]{M(Oxidation (M))|F}{I|L} 5 -1 27.447 0 0 2.6557 0 0 412.16996962715 0 412.16996962715 0 25.457574905606748 0 0 0 1 0 0 0 {M(Oxidation (M))|F}[VP]{M(Oxidation (M))|F}{I|L} 2.6557 - 50 NaN NaN 189683.4 NaN 17597 4009 21606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21609 87.044 NaN 397730 35 0 28867 0.261 + 34554 YPLDLLLKL 9 79 544.3417952292715 1086.669037525343 2 544.3419189453125 MULTI HCD FTMS 0 0 0 21606 330314.65625 1 0 0 3 Unmodified _YPLDLLLKL_ ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4 106.94017166704063 0.003441928997083001 1 YP{I|L}D{I|L}{I|L}{I|L}K{I|L} 9 0 + 90.447 0 0 8.3233 8.3233 89.388 0 0 0 4.7897845729981725 4.7897845729981725 4.7897845729981725 4.7897845729981725 0 2.860924374808178 1.5228787452803376 0.3054621874040891 0.2742275032520141 + + YP{I|L}D{I|L}{I|L}{I|L}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{I|L}{I|L}{I|L}K{I|L};YP{I|L}D{I|L}{I|L}K{I|L}{I|L} 8.3233;7.8826;7.3338 +;+;- + 307 + NaN NaN 144517.2 NaN 17598 4009 21606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21610 87.048 NaN 87986 35 0 11429 0.261 + 34089 YNLVLMLQLH 10 54 622.346875189958 NaN 0 622.3168334960938 PEAK HCD FTMS 0 0 0 21606 77561.015625 1 0 0 4 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.337106189561315 1 G{I|L} 2 -1 9.464 0 0 0.76158 0 0 220.12836844456598 849.4081251244351 1069.536493569001 0 0 0 0 0 0 0 0 0 G{I|L} 0.76158 - 18 + NaN NaN 102293 NaN 17599 4009 21606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21612 87.053 NaN 1795500 35 0 65517 0.326 + 399 AKFRKQERA 9 118 567.3304148038226 1132.646276674445 2 567.3302001953125 MULTI HCD FTMS 0 0 0 21611 2313808.25 0.5982046684901701 24 -0.62420654296875 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 1 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 7 8 15.798 0 0 1.3948 0 0 286.14182944549873 0 286.14182944549873 0 0.07113707503284772 0 0 0 1.024227503252014 0 0.6382104921644451 0 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 1.3948 - 736 NaN NaN 367623.6 NaN 17600 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21613 87.057 NaN 923020 35 0 263130 0.261 -1 MFMVDCTF 8 70 546.7139680382995 1091.413383143399 2 546.7139282226562 MULTI HCD FTMS 0 0 0 21611 391456.90625 0.6776391046865352 3 -0.07823944091796875 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MFMVDC(Carbamidomethyl (C))TF_ ENST00000373068.6_3_9:130870893-130871202:+|nuORF 9.347437153973935 0.5250182646323369 1 {I|L}VA{M(Oxidation (M))|F} 4 -1 43.928 0 0 4.0249 0 0 643.1456776349625 0 643.1456776349625 0 34.886831541432315 0 0 0 1.3494850021680094 0 0 0 {I|L}VA{M(Oxidation (M))|F} 4.0249 - 64 NaN NaN 222041.8 NaN 17601 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21614 87.061 NaN 425700 35 0 21839 0.261 + 649 APLAARTRT 9 84 478.78584162479757 955.5571303163952 2 478.7856750488281 MULTI HCD FTMS 0 0 0 21611 231475.84375 0.3436312062686209 7 -0.17275238037109375 3 Unmodified _APLAARTRT_ REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF 6.723162845929126 0.3000504726104499 1 A 1 -1 8.0989 0 0 0.84756 0 0 105.07998777836981 776.4286036002497 881.5085913786196 0 0 0 0 0 0.5 0 0 0 A 0.84756 + + 25 + NaN NaN 159100.1 NaN 17602 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21615 87.064 NaN 970450 35 0 90946 0.261 + 16966 LYIENQFFI 9 91 593.8106779337152 1185.6068029342302 2 593.8106689453125 MULTI HCD FTMS 0 0 0 21611 270760.6875 0.17945936644396412 -6 0.10860443115234375 4 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 118.89474601620944 0.0014903111061077812 1 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 97.502 0 0 8.2238 8.2238 90.708 0 0 0 18.65279269351241 82.80902815397354 18.65279269351241 8.507112333562858 0 2.305462187404089 1.3010299956639813 0.2302046884880938 1.2302046884880937 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}NQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}N[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.2238;7.5063;7.4471;7.4471;6.7296;6.7296;5.6365;4.919 +;-;-;-;-;-;-;- + 1320 NaN NaN 235164.9 NaN 17603 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21616 87.067 NaN 285900 35 0 14671 0.261 -1 CLKYGRLFV 9 77 578.3208370757744 1154.6271212183487 2 578.3209838867188 MULTI HCD FTMS 0 0 0 21611 141049.765625 0.6223187741391761 5 -0.12377166748046875 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))LKYGRLFV_ ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 4.3292370932331545 0.3181982124262546 1 Q 1 -1 5.4846 0 0 0.47501 0 0 546.3260480755738 477.2324312799438 1023.5584793555176 0 0 0 0 0 0 0 0 0 Q 0.47501 - 58 + NaN NaN 135618.9 NaN 17604 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21617 87.07 NaN 398960 35 0 47359 0.261 + 19691 NWTTAAPLLL 10 63 550.3111065938264 1098.6076602544526 2 550.3116455078125 MULTI HCD FTMS 0 0 0 21611 76640.1875 0.4565404516695421 1 -0.0360260009765625 6 Unmodified _NWTTAAPLLL_ ENSG00000134324|ENST00000674199|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693|LPIN1 32.78568957990786 0.20801173326193015 1 A[{I|L}P]{I|L}{I|L} 5 5 35.713 0 0 3.2508 0 0 573.2548384043475 0 573.2548384043475 0 18.723637474483468 0 0 0 1.5 0 0 0 + A[{I|L}P]{I|L}{I|L} 3.2508 + + 35 NaN NaN 141731.6 NaN 17605 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21618 87.074 NaN 125640 35 0 28901 0.261 + 3585 EKINTIPLISK 11 42 628.3828861085907 1254.7512192839813 2 628.3825073242188 MULTI HCD FTMS 0 0 0 21611 11712.7177734375 0.08884040626189964 1 -0.0360260009765625 7 Unmodified _EKINTIPLISK_ REV__ENSG00000165309|ENST00000298032|ARMC3;REV__nc|ENSG00000165309|Q5W041-4|ARMC3 2.0860074813731053 0.4097721463192591 1 W 1 -1 6.9897 0 0 0.55706 0 0 459.3111080552688 606.3294771783811 1065.64058523365 0 0 0 0 0 0 0 0 0 W 0.55706 - 5 + NaN NaN 100216.3 NaN 17606 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21619 87.077 NaN 265450 35 0 71099 0.264 + 505 ANITPFPD 8 34 437.71901610363835 NaN 0 437.71929931640625 PEAK HCD FTMS 0 0 0 21611 35785.8515625 0.3471490225222241 3 -0.07823944091796875 8 Unmodified _ANITPFPD_ ENST00000257868.9_1_12:56143541-56143886:+|nuORF 18.13498045792455 0.38579626240450227 1 N{M(Oxidation (M))|F} 2 6 17.206 0 0 1.97 0 0 71.03762277478968 538.2505587213499 609.2881814961396 0 0 0 0 0 0.5 0 0 0.4247425010840047 N{M(Oxidation (M))|F} 1.97 - 6 + NaN NaN 124703.7 NaN 17607 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21620 87.08 NaN 168390 35 0 66766 0.261 + 10466 IPDLDWEL 8 39 500.7528227546679 999.4910925761358 2 500.75341796875 MULTI HCD FTMS 0 0 0 21611 65879.3125 0.4711082397538151 -8 0.14275360107421875 9 Unmodified _IPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 16.942295170755138 0.46913822049235215 1 AWE{I|L} 4 5 35.037 0 0 3.5055 0 0 482.2393971173844 0 482.2393971173844 0 18.839256468719157 0 0 0 0.8494850021680094 0 0 0 AWE{I|L} 3.5055 - 20 NaN NaN 106175 NaN 17608 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21621 87.084 NaN 83852 35 0 14869 0.261 + 34090 YNLVLMLQLH 10 45 622.346875189958 NaN 0 622.3479614257812 PEAK HCD FTMS 0 0 0 21611 32840.73046875 0.4234180045750271 1 -0.0360260009765625 10 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.337106189561315 1 G{I|L} 2 -1 10.969 0 0 0.8827 0 0 220.12720877659723 849.4062814905793 1069.5334902671766 0 0 0 0 0 0 0 0 0 G{I|L} 0.8827 - 9 + NaN NaN 108770.9 NaN 17609 4010 21611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21623 87.089 NaN 1599200 35 0 495920 0.326 + 6311 FPFQDIEL 8 65 504.7554588418199 1007.4963647504399 2 504.75531005859375 MULTI HCD FTMS 0 0 0 21622 1187919.375 0.44048350610104575 7 -0.1628875732421875 1 Unmodified _FPFQDIEL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 74.92900055777586 0.024005273830084817 1 DQME{I|L} 5 5 57.765 0 0 5.7336 0 0 373.22151381660314 0 373.22151381660314 0 37.922429093808105 0 0 0 1.610924374808178 0 1.4291746928241125 0.3252574989159953 DQME{I|L} 5.7336 - 449 NaN NaN 324019.8 NaN 17610 4011 21622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21624 87.093 NaN 582710 35 0 125200 0.261 + 28410 TPFLYDLVM 9 75 557.7783515620231 1113.542150190846 2 557.7781372070312 MULTI HCD FTMS 0 0 0 21622 362079.5625 0.24728355193256243 22 -0.5653305053710938 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 48.345845343767074 0.03388484103555672 1 YD{I|L}V{M(Oxidation (M))|F} 5 4 58.488 0 0 5.2524 0 0 458.25325209785314 0 458.25325209785314 0 44.508272069161734 0 0 0 2 0 0.805462187404089 0 + YD{I|L}V{M(Oxidation (M))|F} 5.2524 + + 282 NaN NaN 170773.8 NaN 17611 4011 21622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21625 87.097 NaN 73816 35 0 12283 0.262 + 32556 WILFEWNYAD 10 39 452.88080895871434 NaN 0 452.8704833984375 PEAK HCD FTMS 0 0 0 21622 11198.23046875 0.39408466172227996 -7 0.14463043212890625 3 Unmodified _WILFEWNYAD_ REV__ENSG00000116793|ENST00000369604|PHTF1;REV__ENST00000481652.1_1_1:114242829-114248598:-|nuORF;REV__PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant 0.776531954647913 0.3395196853010637 1 A 1 -1 0.9691 0 0 0.10723 0 0 524.5424579059069 305.1367586725219 829.6792165784288 0 0 0 0 0 0 0 0 0 A 0.10723 + + 3 + NaN NaN 85403.5 NaN 17612 4011 21622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21626 87.1 NaN 154880 35 0 9593.4 0.261 + 12813 KYEFCCVCLY 10 63 635.7686651463135 1269.522777359427 2 635.769287109375 MULTI HCD FTMS 0 0 0 21622 38871.9375 0.8439000310127166 -3 0.07456207275390625 4 Unmodified _KYEFCCVCLY_ REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant 13.90604991867851 0.3810395177745597 1 [YV]AS{M(Oxidation (M))|F} 5 -1 51.753 0 0 4.0765 0 0 0 699.230498628689 699.230498628689 27.28855930516417 0 0 0 0 1.555462187404089 1.6989700043360187 0 0 [YV]AS{M(Oxidation (M))|F} 4.0765 - 70 + NaN NaN 104160.1 NaN 17613 4011 21622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21628 87.105 NaN 3591900 35 0 614950 0.327 + 10689 IPVWDQEFL 9 104 573.7951807712552 1145.5758086093103 2 573.7845458984375 MULTI HCD FTMS 0 0 0 21627 336794.9375 0.08260497464543465 9 -0.23189544677734375 1 Unmodified _IPVWDQEFL_ ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 43.77239144664712 0.04802738721622131 1 {M(Oxidation (M))|F}APAN{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 9 7 61.531 0 0 5.3712 0 0 165.1002874964791 0 165.1002874964791 0 14.64198094270153 0 0 0 0.4247425010840047 0 0.5138793319624578 1.2302046884880937 {M(Oxidation (M))|F}APAN{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 5.3712 - 6623 + NaN NaN 603157 NaN 17614 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21629 87.109 NaN 1102100 35 0 122640 0.261 + 18944 NAFTMPLHM 9 94 531.2496242591615 1060.4846955851228 2 531.2498779296875 MULTI HCD FTMS 0 0 0 21627 713305.3125 0.5693187620581761 3 -0.07164764404296875 2 Unmodified _NAFTMPLHM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 26.88365393820708 0.12808753336095696 1 NA{M(Oxidation (M))|F}EE{I|L}V 7 5 75.156 0 0 7.087 0 0 0 255.07517419986567 255.07517419986567 16.444794765625304 0 0 0 0 2.392159058960253 1.5228787452803376 0.3054621874040891 0 NA{M(Oxidation (M))|F}EE{I|L}V 7.087 - 2102 + NaN NaN 262663.6 NaN 17615 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21630 87.113 NaN 1126200 35 0 327690 0.261 + 5830 FPDASFQVVL 10 65 561.7953064240825 1121.5760599149648 2 561.7953491210938 MULTI HCD FTMS 0 0 0 21627 662615.125 0.5504968149426648 9 -0.23189544677734375 3 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 34.93206674587334 0.18938571726943593 1 S{M(Oxidation (M))|F}QVV{I|L} 6 4 69.686 0 0 6.2132 0 0 430.1834889142594 0 430.1834889142594 0 65.78463459467827 0 0 0 2 0 0.3494850021680094 0.805462187404089 + S{M(Oxidation (M))|F}QVV{I|L} 6.2132 + + 131 NaN NaN 250552.6 NaN 17616 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21631 87.116 NaN 549720 35 0 166140 0.261 + 5965 FPDQLYDAVF 10 47 607.7901237196654 1213.5656945061307 2 607.790283203125 MULTI HCD FTMS 0 0 0 21627 399322.8125 0.6014019485522344 -7 0.14531707763671875 4 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 23.789781309258295 0.28859042913526417 1 DAV{M(Oxidation (M))|F} 4 6 50.433 0 0 4.1558 0 0 763.3544240619179 0 763.3544240619179 0 45.828956512079344 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 4.1558 + + 55 NaN NaN 170680 NaN 17617 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21632 87.119 NaN 266550 35 0 14749 0.264 + 25625 SGLLERKH 8 74 470.27217946135937 938.5298059895188 2 470.2720642089844 MULTI HCD FTMS 0 0 0 21627 300812 0.355745667959613 7 -0.17295074462890625 5 Unmodified _SGLLERKH_ REV__ENSG00000133454|ENST00000335473|MYO18B;REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B;REV__nc|ENSG00000133454|Q8IUG5-3|MYO18B 4.75600775471527 0.5349361699807423 1 Q[{M(Oxidation (M))|F}V] 3 -1 8.6709 0 0 0.92388 0 0 546.3244496076187 0 546.3244496076187 0 1.4389373475700769 0 0 0 0.5114393726401688 0 0 0 Q[{M(Oxidation (M))|F}V] 0.92388 - 17 NaN NaN 124837.1 NaN 17618 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21633 87.123 NaN 1297000 35 0 152220 0.261 + 17395 LYQLHSTCF 9 104 584.7759688011434 1167.5373846690868 2 584.7755737304688 MULTI HCD FTMS 0 0 0 21627 275384.90625 0.5827799867113483 -4 0.09066009521484375 6 Carbamidomethyl (C) _LYQLHSTC(Carbamidomethyl (C))F_ REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense 43.85829265575387 0.04763305254408404 1 {I|L}YQ{M(Oxidation (M))|F}NPNC(Carbamidomethyl (C)){I|L} 9 -1 + 82.181 0 0 7.0388 7.0388 89.848 0 0 0 38.07914649780641 0.5192435809753704 0.5192435809753704 9.208187539523749 0 1.7104093769761877 2 0 1.079689690656103 {I|L}YQ{M(Oxidation (M))|F}NPNC(Carbamidomethyl (C)){I|L};{I|L}YQ{M(Oxidation (M))|F}GGPNC(Carbamidomethyl (C)){I|L};{I|L}YQ{M(Oxidation (M))|F}NPGGC(Carbamidomethyl (C)){I|L};{I|L}Y[AG]{M(Oxidation (M))|F}NPNC(Carbamidomethyl (C)){I|L};{I|L}YG{M(Oxidation (M))|F}ANPNC(Carbamidomethyl (C)){I|L};{I|L}Y[AG]{M(Oxidation (M))|F}NPGGC(Carbamidomethyl (C)){I|L};{I|L}Y[AG]{M(Oxidation (M))|F}GGPNC(Carbamidomethyl (C)){I|L};{I|L}YG{M(Oxidation (M))|F}AGGPNC(Carbamidomethyl (C)){I|L};{I|L}YG{M(Oxidation (M))|F}ANPGGC(Carbamidomethyl (C)){I|L};{I|L}YQ{M(Oxidation (M))|F}GGPGGC(Carbamidomethyl (C)){I|L} 7.0388;6.2501;6.2501;6.2501;6.0458;5.4652;5.4652;5.2609;5.2609;4.8398 -;-;-;-;-;-;-;-;-;- 3762 + NaN NaN 291058.1 NaN 17619 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21634 87.126 NaN 759180 35 0 333150 0.261 + 23261 RGRLLRLPEE 10 78 619.8696821960666 1237.7248114589331 2 619.8693237304688 MULTI HCD FTMS 0 0 0 21627 244379.265625 0.7076981280353792 5 -0.12062835693359375 7 Unmodified _RGRLLRLPEE_ ENST00000394202.8_1_1:95369066-95392622:-|nuORF 3.2813086475875832 0.45793521633868084 1 [Y{I|L}]P 3 8 22.676 0 0 1.8321 0 0 0 861.4998108087956 861.4998108087956 15.686362358410122 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]P 1.8321 - 39 NaN NaN 219873.6 NaN 17620 4012 21627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21636 87.131 NaN 1457900 35 0 47341 0.327 + 12183 KKMAQVLHVP 10 113 575.8429679130824 NaN 0 575.8428955078125 PEAK HCD FTMS 0 0 0 21635 899293.125 0.523647512597071 10 -0.25811004638671875 1 Unmodified _KKMAQVLHVP_ ENST00000590400.1_1_19:11303345-11305238:-|nuORF 9.38312468134398 0.33215363477037435 1 D 1 10 10.599 0 0 0.92191 0 0 61.05264935653447 970.5451365481636 1031.597785904698 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.92191 - 459 + NaN NaN 318030.1 NaN 17621 4013 21635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21637 87.135 NaN 681540 35 0 67890 0.261 + 7712 FYLLNVDNI 9 88 555.7949779037169 1109.5754028742338 2 555.7953491210938 MULTI HCD FTMS 0 0 0 21635 260782.171875 0.7657325832697978 1 -0.02278900146484375 2 Unmodified _FYLLNVDNI_ ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF 176.83740622441886 1.0594397382223596E-10 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}NVDN{I|L} 9 0 + 88.216 0 0 7.9504 7.9504 91.344 0 0 0 2.531621556440868 2.531621556440868 2.531621556440868 9.208187539523749 0 3.004432191740108 0 1.3807196863200843 1.5032846824274886 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}NVDN{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}GGVDN{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}NVDGG{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}GGVDGG{I|L};[DN]V{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[Y{M(Oxidation (M))|F}]{I|L};[DN]{I|L}V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}Y{M(Oxidation (M))|F};[DN]{I|L}V{[QV]|[N{I|L}]|[RA]|[KV]}[Y{M(Oxidation (M))|F}]{I|L};[DN]V{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}Y{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}NV{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}Y{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}NV{[QV]|[N{I|L}]|[RA]|[KV]}[Y{M(Oxidation (M))|F}]{I|L} 7.9504;7.1205;6.8924;4.9859;2.1721;2.1274;2.0623;1.7187;1.2667;1.2017 +;-;-;-;-;-;-;-;-;- + 1127 + NaN NaN 186087.6 NaN 17622 4013 21635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21638 87.139 NaN 718880 35 0 182730 0.261 + -1 YYSAMMASPF 10 79 600.2402428302458 1198.4659327272916 2 600.7420043945312 MULTI HCD FTMS 0 0 0 21635 131400.5625 0.715189453041783 -3 0.07823944091796875 3 2 Oxidation (M) _YYSAM(Oxidation (M))M(Oxidation (M))ASPF_ REV__ENSG00000187049|ENST00000515837|TMEM216;REV__nc|ENSG00000187049|Q9P0N5-2|TMEM216;REV__nc|ENSG00000187049|Q9P0N5-3|TMEM216 7.289230182591677 0.43672065049472153 1 [YV]{I|L} 3 -1 21.963 0 0 1.8326 0 0 0 820.2272602021541 820.2272602021541 3.80211241711606 0 0 0 0 0 1.3010299956639813 0 0 [YV]{I|L} 1.8326 - 225 NaN NaN 189438.5 NaN 17623 4013 21635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21639 87.142 NaN 307210 35 0 26087 0.261 + 22826 QYLPYISYL 9 76 580.3053604351962 1158.5961679371924 2 580.3049926757812 MULTI HCD FTMS 0 0 0 21635 61139.70703125 0.03448154322353216 18 -0.46408843994140625 4 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 39.94969957227396 0.06557568441294001 1 {I|L}SY{I|L} 4 5 45.706 0 0 3.945 0 0 664.3215199201187 0 664.3215199201187 0 30.132965752203233 0 0 0 1.2302046884880937 0 0.9247425010840047 0 + {I|L}SY{I|L} 3.945 + + 828 NaN NaN 132961 NaN 17624 4013 21635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21640 87.145 NaN 251550 35 0 38317 0.261 + 11253 IYLNDQNLCI 10 48 604.8017168977663 1207.5888808623324 2 605.30419921875 MULTI HCD FTMS 0 0 0 21635 57977.890625 0.4621240393211783 -3 0.07823944091796875 5 Unmodified _IYLNDQNLCI_ ENSG00000261609|ENST00000648994|GAN 22.736283301280096 0.29844449404982915 1 [Y{I|L}]{I|L}[YT]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 7 47.414 0 0 3.9264 0 0 0 128.07457291577012 128.07457291577012 30.42464714820923 0 0 0 0 1.7059771852360797 2 0 0 [Y{I|L}]{I|L}[YT]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.9264 - 75 NaN NaN 119150.5 NaN 17625 4013 21635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21641 87.149 NaN 105510 35 0 10990 0.261 -1 0 51 626.2790098975455 1250.543466861891 2 626.279296875 MULTI HCD FTMS 0 0 0 21635 41450.06640625 0.012938851353750516 21 -0.5459671020507812 6 NaN NaN 1 E[NS]{I|L} 4 -1 22.677 0 0 1.8134 0 0 789.357225486525 0 789.357225486525 0 17.19273760456403 0 0 0 0.8252574989159953 0 0.4247425010840047 0 E[NS]{I|L} 1.8134 - 12 NaN NaN 102786.7 NaN 17626 4013 21635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21643 87.154 NaN 3123300 35 0 571420 0.327 + 18918 NAFEELVAF 9 75 520.258389761945 1038.5022265906898 2 520.258544921875 MULTI HCD FTMS 0 0 0 21642 2516769 0.24966841744898985 7 -0.18299102783203125 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 122.17920374332846 0.0010792739174387011 1 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 105.22 0 0 10.132 10.132 89.394 0 0 0 0.834909110043327 0.834909110043327 0.834909110043327 0.834909110043327 0 3.2302046884880937 1.2218487496163564 0.7302046884880937 1.2302046884880937 + + {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NEE{I|L}VA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}E[{I|L}V]EA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}GGEE{I|L}VA{M(Oxidation (M))|F} 10.132;10.051;8.4478;6.8996;6.3765 +;-;-;-;- + 275 NaN NaN 410256.8 NaN 17627 4014 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21644 87.158 NaN 445950 35 0 28829 0.261 + 33695 YKTLKERQR 9 86 611.3563383987387 1220.6981238642772 2 611.356201171875 MULTI HCD FTMS 0 0 0 21642 382093.46875 0.5324913138569785 7 -0.18299102783203125 2 Unmodified _YKTLKERQR_ ENSG00000180999|ENST00000367727|C1orf105 6.630372943996041 0.3007538891620783 1 Q 1 8 6.1092 0 0 0.50047 0 0 678.404313905096 411.2229403131469 1089.627254218243 0 0 0 0 0 0.5 0 0 0 + Q 0.50047 + + 38 + NaN NaN 165408 NaN 17628 4014 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21645 87.162 NaN 940290 35 0 155230 0.261 + 18907 NAFEDSFSSIL 11 84 615.2882252766974 1228.5618976201947 2 615.2877807617188 MULTI HCD FTMS 0 0 0 21642 319610.5625 0.01166304072791901 22 -0.5656585693359375 3 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 89.60864043982822 0.00844057412745266 1 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 3 + 92.864 0 0 7.5587 7.5587 94.906 0 0 0 21.27446339430594 51.14669100750051 21.27446339430594 33.76851079634196 0 2.7931576817365436 1.5228787452803376 1.3807196863200843 0.6747425010840047 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][DP]SS{M(Oxidation (M))|F}SS{I|L}{I|L};[NP]{[{M(Oxidation (M))|F}C]|[YS]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[{M(Oxidation (M))|F}D]|MM}SS{I|L}{I|L};[Y{I|L}]EEE{M(Oxidation (M))|F}S{[QN]|[E{I|L}]|[KN]}A;[NP]{[YD]|[{M(Oxidation (M))|F}M]}SS{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}[RP]{M(Oxidation (M))|F};[WY][WP][YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.5587;4.8101;4.4956;3.1335;3.1069;2.9142;2.604;1.5015;0.23535 -;-;-;-;-;-;-;-;- 950 NaN NaN 225906.5 NaN 17629 4014 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21646 87.165 NaN 1159900 35 0 541710 0.261 + 33903 YLPPLFWRF 9 91 619.8399339872459 1237.6653150412917 2 619.8397827148438 MULTI HCD FTMS 0 0 0 21642 273025.34375 0.5047590034153575 -6 0.13956451416015625 4 Unmodified _YLPPLFWRF_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 42.09456458481378 0.05572955244001856 1 [Y{I|L}]P[{I|L}P]Y 6 4 36.99 0 0 2.9887 0 0 0 488.2557772272094 488.2557772272094 19.515494032379728 0 0 0 0 1.1549471895720984 1.6989700043360187 0 0 [Y{I|L}]P[{I|L}P]Y 2.9887 - 156 + NaN NaN 258211.8 NaN 17630 4014 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21647 87.168 NaN 295960 35 0 34769 0.261 + 5468 FIPSEPGLAF 10 66 539.2835700505414 NaN 0 539.295654296875 PEAK HCD FTMS 0 0 0 21642 10925.4140625 0.29242228619181976 -7 0.14892578125 5 Unmodified _FIPSEPGLAF_ ENST00000433094.1_1_20:46994536-46995317:+|nuORF 10.823927491677226 0.33092050725491123 1 EP 2 8 14.442 0 0 1.3415 0 0 131.07498215172205 716.3268613457317 847.4018434974537 0 0 0 0 0 0.6861818737241735 0 0.28872548999643577 0 + EP 1.3415 + + 57 + NaN NaN 117025.1 NaN 17631 4014 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21648 87.172 NaN 194920 35 0 48770 0.261 + 9998 IEMSHRNQ 8 47 507.7424398904593 NaN 0 507.74261474609375 PEAK HCD FTMS 0 0 0 21642 29492.3515625 0.5887845052120396 -4 0.1010284423828125 6 Unmodified _IEMSHRNQ_ REV__ENSG00000154447|ENST00000284637|SH3RF1;REV__nc|ENSG00000154447|Q7Z6J0-3|SH3RF1 7.289230182591677 0.38822285293237185 1 E 1 -1 5.4846 0 0 0.54117 0 0 131.0934202528677 750.3077486627561 881.4011689156239 0 0 0 0 0 0 0 0 0 E 0.54117 + + 4 + NaN NaN 111537.3 NaN 17632 4014 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21650 87.176 NaN 847610 35 0 59561 0.327 -1 0 114 589.3430503555608 1176.6715477779214 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21649 364199.3125 0.26571674756469177 38 -1.0093994140625 1 NaN NaN 1 YY{I|L}T{M(Oxidation (M))|F}VEE 8 -1 35.019 0 0 2.9761 0 0 0 129.15450221336565 129.15450221336565 13.11778807139057 0 0 0 0 0 1.0969100130080565 0.7753187046026266 0 YY{I|L}T{M(Oxidation (M))|F}VEE 2.9761 - 1390 NaN NaN 234588.7 NaN 17633 4015 21649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21651 87.181 NaN 1136800 35 0 94593 0.261 + 16223 LPWAEFESL 9 85 546.2738973329082 1090.5332417326163 2 546.2741088867188 MULTI HCD FTMS 0 0 0 21649 330661.6875 0.41930415913086067 -4 0.08774566650390625 2 Unmodified _LPWAEFESL_ ENSG00000142273|ENST00000647358|CBLC;nc|ENSG00000142273|Q9ULV8-2|CBLC 112.59319219568356 0.00251905749371435 1 [{I|L}P]WAE{M(Oxidation (M))|F}ES{I|L} 9 0 + 75.601 0 0 6.9325 6.9325 93.787 0 0 0 12.069167772559908 35.98644688804811 12.069167772559908 33.77758779335053 0 2.274227503252014 0.9208187539523752 0.3807196863200844 0 + + [{I|L}P]WAE{M(Oxidation (M))|F}ES{I|L};{[TV]|[{I|L}S]}E{M(Oxidation (M))|F}EA[WP]{I|L};{[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}[QA]{I|L}ES{I|L};[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}EA[WP]{I|L} 6.9325;3.8351;3.5038;0.82046 +;-;-;- + 428 NaN NaN 251157.7 NaN 17634 4015 21649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21652 87.184 NaN 237160 35 0 38597 0.261 + 13723 KYPLNLYLLF 10 52 642.3739101990147 1282.7332674648294 2 642.3739013671875 MULTI HCD FTMS 0 0 0 21649 33255.1015625 0.24886106235211525 1 -0.02281951904296875 3 Unmodified _KYPLNLYLLF_ ENSG00000155957|ENST00000358230|TMBIM4 45.69961567697781 0.09594615698576985 1 [YK][{I|L}P]N{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 55.724 0 0 4.3441 4.3441 83.405 0 0 0 5.0565842292838425 45.26593150440647 5.0565842292838425 6.817496819840656 0 1.7302046884880937 0 0 0.3807196863200844 + + [YK][{I|L}P]N{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F};[K{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F};[YK][{I|L}P]GG{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F};[K{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F} 4.3441;3.8126;3.6297;3.0982 +;-;-;- + 65 NaN NaN 121437.3 NaN 17635 4015 21649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21653 87.188 NaN 329800 35 0 68584 0.261 + 8228 GRRLETRPPI 10 77 597.85630626873 1193.69805960426 2 597.8558349609375 MULTI HCD FTMS 0 0 0 21649 122287.0859375 0.23989750495818668 12 -0.31703948974609375 4 Unmodified _GRRLETRPPI_ REV__ENSG00000155629|ENST00000339364|PIK3AP1;REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF;REV__nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 5.731851221503515 0.44496410492002586 1 M 1 -1 5.4846 0 0 0.45946 0 0 633.3721382228905 426.26471490014734 1059.6368531230378 0 0 0 0 0 0 0 0 0 M 0.45946 - 17 + NaN NaN 131347.5 NaN 17636 4015 21649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21654 87.191 NaN 183420 35 0 30903 0.264 + 11628 IYTYQFENF 9 46 408.8581052618656 1223.5524863857968 3 408.8580627441406 MULTI HCD FTMS 0 0 0 21649 11396.40625 0.23455780987188432 1 -0.02281951904296875 5 Unmodified _IYTYQFENF_ ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2 6.723162845929126 0.3000504726104499 1 {I|L}Y 2 7 44.776 0 0 3.6595 0 0 0 944.3829336581043 944.3829336581043 39.291746928241125 0 0 0 0 0.3807196863200844 2 0 0 + {I|L}Y 3.6595 + + 7 + NaN NaN 116432.4 NaN 17637 4015 21649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21655 87.194 NaN 95218 35 0 10548 0.261 + 7144 FSEQVPPAF 9 46 511.25240904240826 NaN 0 511.2530517578125 PEAK HCD FTMS 0 0 0 21649 21323.86328125 0.25970778082067697 8 -0.21257781982421875 6 Unmodified _FSEQVPPAF_ REV__ENSG00000081923|ENST00000648908|ATP8B1 7.910154910731844 0.25691533546754686 1 M 1 -1 5.4846 0 0 0.53744 0 0 481.1572117148891 405.2619722955688 886.4191840104579 0 0 0 0 0 0 0 0 0 M 0.53744 - 6 + NaN NaN 101950.7 NaN 17638 4015 21649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21657 87.199 NaN 1680500 35 0 58639 0.327 + 23755 RRHAELAPLA 10 122 567.3304148038226 1132.646276674445 2 567.3305053710938 MULTI HCD FTMS 0 0 0 21656 2181947.75 0.5641138717746479 30 -0.8144073486328125 1 Unmodified _RRHAELAPLA_ ENSG00000120662|ENST00000379480|MTRF1;nc|ENSG00000120662|O75570-2|MTRF1 10.073929032068715 0.4168838835836452 1 {[HG]|PP}NGH[TA]K 8 8 19.887 0 0 1.7558 0 0 0 327.1447849556925 327.1447849556925 6.788428240693921 0 0 0 0 1.5752574989159953 0 0.7302046884880937 0 {[HG]|PP}NGH[TA]K 1.7558 - 796 + NaN NaN 343898.7 NaN 17639 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21658 87.204 NaN 2351700 35 0 238820 0.261 + 16967 LYIENQFFI 9 95 593.8106779337152 1185.6068029342302 2 593.8109130859375 MULTI HCD FTMS 0 0 0 21656 1508757.625 1 0 0 2 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 158.20266083822983 1.5497770410472245E-07 1 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 109.52 0 0 9.2373 9.2373 91.236 0 0 0 18.741436528314566 89.83403980406274 18.741436528314566 6.465912507003608 0 2.3494850021680094 1.3979400086720375 1.0734913348214123 1.6237125054200234 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}NQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}N[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}NQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}GGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}N[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9.2373;8.6919;8.4606;8.1659;7.9153;7.6205;7.1104;6.3338;6.3338;6.3181 +;-;-;-;-;-;-;-;-;- + 2847 NaN NaN 441176.8 NaN 17640 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21659 87.207 NaN 250400 35 0 14181 0.261 + 23402 RLGQSHKSSR 10 73 578.3208370757744 1154.6271212183487 2 578.32080078125 MULTI HCD FTMS 0 0 0 21656 147009.609375 0.6486139093357968 11 -0.294219970703125 3 Unmodified _RLGQSHKSSR_ REV__ENSG00000152583|ENST00000282470|SPARCL1;REV__nc|ENSG00000152583|Q14515-2|SPARCL1 2.9952420565917617 0.4594494122822477 1 Q 1 -1 2.4743 0 0 0.21429 0 0 502.2969343060425 521.2586763971311 1023.5556107031737 0 0 0 0 0 0 0 0 0 Q 0.21429 + + 20 + NaN NaN 113992.2 NaN 17641 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21660 87.211 NaN 174960 35 0 19395 0.262 + 20925 PLAARTRTA 9 51 478.78584162479757 955.5571303163952 2 478.7855224609375 MULTI HCD FTMS 0 0 0 21656 72475.28125 0.1075912195291223 13 -0.34328460693359375 4 Unmodified _PLAARTRTA_ REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF 5.731851221503515 0.3075653528928475 1 {I|L} 1 -1 4.6041 0 0 0.48182 0 0 132.09028597114872 707.3633516900999 839.4536376612486 0 0 0 0 0 0 0 0 0 {I|L} 0.48182 + + 12 + NaN NaN 128443.3 NaN 17642 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21661 87.214 NaN 207380 35 0 17682 0.261 + 20945 PLDLLCCESL 10 60 553.2651793945494 1104.5158058558986 2 553.2634887695312 MULTI HCD FTMS 0 0 0 21656 60445.25 0.6449883014990387 -2 0.045562744140625 5 Unmodified _PLDLLCCESL_ ENST00000446265.3_1:149648157-149648721:+|nuORF 24.020572477871973 0.2864316864133941 1 [YQ][YR]{M(Oxidation (M))|F}ES{I|L} 8 7 + 48.945 0 0 4.4314 4.4314 89.31 0 0 0 0.45757490560674796 25.41325298820567 0.45757490560674796 31.224862742317466 0 1.305462187404089 0 0.3494850021680094 0 [YQ][YR]{M(Oxidation (M))|F}ES{I|L};[YQ][YR]{M(Oxidation (M))|F}[{I|L}T]D;N{[MS]|[{M(Oxidation (M))|F}A]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}CM 4.4314;1.6044;0.84374 -;-;- 233 NaN NaN 112665.5 NaN 17643 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21662 87.217 NaN 253070 35 0 26754 0.261 + 27252 SYPDLLPTF 9 56 526.7686078377452 1051.5226627422903 2 526.7696533203125 MULTI HCD FTMS 0 0 0 21656 53174.375 0.029290228956713023 13 -0.34328460693359375 6 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 32.30548876998284 0.10066689432505688 1 {I|L}VQATP{I|L}{M(Oxidation (M))|F} 8 7 39.686 0 0 3.7741 0 0 164.0052810057653 0 164.0052810057653 0 21.49797211252192 0 0 0 1.1549471895720984 0 0 0 {I|L}VQATP{I|L}{M(Oxidation (M))|F} 3.7741 - 335 + NaN NaN 119080 NaN 17644 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21663 87.221 NaN 74866 35 0 7252.9 0.261 + 5133 FESIIHEF 8 48 511.25240904240826 NaN 0 511.251708984375 PEAK HCD FTMS 0 0 0 21656 9828.798828125 0.11970699202661461 9 -0.25206756591796875 7 Unmodified _FESIIHEF_ ENSG00000163527|ENST00000295770|STT3B;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000453168.5_1_3:31574490-31661308:+|nuORF 5.230669730166228 0.38822285293237185 1 M 1 8 5.4846 0 0 0.53744 0 0 481.15867443071653 405.2612703912719 886.4199448219885 0 0 0 0 0 0 0 0 0 M 0.53744 - 3 + NaN NaN 94954.2 NaN 17645 4016 21656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21665 87.225 NaN 648220 35 0 135090 0.327 + 6312 FPFQDIEL 8 67 504.7554588418199 1007.4963647504399 2 504.7555236816406 MULTI HCD FTMS 0 0 0 21664 333752.09375 0.12375611974808047 13 -0.330078125 1 Unmodified _FPFQDIEL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 24.020572477871973 0.4170589785259073 1 D{I|L}E{I|L} 4 4 35.622 0 0 3.5357 0 0 519.2465687482437 0 519.2465687482437 0 26.642951979966142 0 0 0 0.6694451763165201 0 0 0 + D{I|L}E{I|L} 3.5357 + + 54 NaN NaN 183916.5 NaN 17646 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21666 87.23 NaN 364010 35 0 40723 0.261 + 1694 CGFVGEPF 8 61 428.18821382380776 854.3618747144155 2 428.1888122558594 MULTI HCD FTMS 0 0 0 21664 317541.0625 0.38075192678277897 -3 0.07172393798828125 2 Unmodified _CGFVGEPF_ REV__ENST00000526770.5_1_11:67378371-67379926:+|nuORF 2.8892196856762586 0.5377058178582064 1 {I|L} 1 -1 0.27759 0 0 0.032491 0 0 376.1469526946874 362.10895715885005 738.2559098535374 0 0 0 0 0 0 0 0 0 {I|L} 0.032491 - 6 + NaN NaN 139259.9 NaN 17647 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21667 87.233 NaN 162470 35 0 68168 0.261 + 10467 IPDLDWEL 8 28 500.7528227546679 999.4910925761358 2 500.7527770996094 MULTI HCD FTMS 0 0 0 21664 90181.8125 0.6448973635643754 -1 0.02616119384765625 3 Unmodified _IPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 28.486842064014134 0.3788298654084067 1 {[QN]|[E{I|L}]|[KN]}[VP]DWE{I|L} 8 3 + 41.956 0 0 4.1977 4.1977 89.471 0 0 0 3.7802217037673103 41.95554701812867 3.7802217037673103 41.95554701812867 0 0.9247425010840047 0 0.3494850021680094 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}[VP]DWE{I|L} 4.1977 - 27 NaN NaN 108156.5 NaN 17648 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21668 87.237 NaN 265950 35 0 61726 0.261 + 15329 LPAVFEEVL 9 56 508.78677869539445 1015.5590044575889 2 508.7868347167969 MULTI HCD FTMS 0 0 0 21664 159196.0625 0.8457773714590062 -4 0.094512939453125 4 Unmodified _LPAVFEEVL_ ENSG00000013364|ENST00000357402|MVP 26.88365393820708 0.12808753336095696 1 EEV{I|L} 4 5 32.924 0 0 3.242 0 0 527.3105335919937 0 527.3105335919937 0 14.340905095085205 0 0 0 0.7887254899964358 0 0 0 + EEV{I|L} 3.242 + + 130 NaN NaN 125975.9 NaN 17649 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21669 87.24 NaN 451040 35 0 75585 0.261 + 10701 IPWPLEEQF 9 79 579.7944881752409 1157.5744234172817 2 579.79443359375 MULTI HCD FTMS 0 0 0 21664 177926.09375 0.5269322295243304 -3 0.07172393798828125 5 Unmodified _IPWPLEEQF_ ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2 103.74828524460852 0.00396301343438984 1 [{I|L}P]W[{I|L}P]EEQ{M(Oxidation (M))|F} 9 0 + 66.756 0 0 5.7669 5.7669 89.411 0 0 0 3.65279269351241 50.54799148401521 3.65279269351241 13.015384402724592 0 2.055462187404089 0 0.75 0.3807196863200844 + + [{I|L}P]W[{I|L}P]EEQ{M(Oxidation (M))|F};[{I|L}P]W[{I|L}P]EE[AG]{M(Oxidation (M))|F} 5.7669;4.6426 +;- + 522 NaN NaN 155648.5 NaN 17650 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21670 87.243 NaN 59996 35 0 6575 0.263 + -1 PYLNESVSPRM 11 33 436.8798015364906 1307.617575209672 3 437.21453857421875 MULTI HCD FTMS 0 0 0 21664 23733.78125 0.6661548679969485 7 -0.1931304931640625 6 Oxidation (M) _PYLNESVSPRM(Oxidation (M))_ REV__CCDC80|p.R406M|1|0.21|ENSG00000091986|chr3:112638689-112638689|C/A|missense_variant 2.0839675508343545 0.40978109276162705 1 V 1 -1 6.9897 0 0 0.53454 0 0 505.2320904458032 700.2952364557249 1205.527326901528 0 0 0 0 0 0 0 0 0 V 0.53454 + + 2 + NaN NaN 94928.5 NaN 17651 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21671 87.247 NaN 108280 35 0 15549 0.261 + 34091 YNLVLMLQLH 10 53 622.346875189958 NaN 0 622.346435546875 PEAK HCD FTMS 0 0 0 21664 18829.884765625 0.2427751185810365 8 -0.2259063720703125 7 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.337106189561315 1 {I|L} 1 -1 6.9897 0 0 0.56247 0 0 852.4900322629254 274.0831698053344 1126.57320206826 0 0 0 0 0 0 0 0 0 {I|L} 0.56247 + + 7 + NaN NaN 102355.8 NaN 17652 4017 21664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21673 87.252 NaN 3197100 35 0 623440 0.327 + 17363 LYQFNPAFF 9 88 573.7842528241486 1145.553952715097 2 573.784423828125 MULTI HCD FTMS 0 0 0 21672 2193866.5 0.6863747571418292 2 -0.05559539794921875 1 Unmodified _LYQFNPAFF_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 104.79918948944588 0.003791450360204016 1 [Y{I|L}]Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 99.294 0 0 8.6677 8.6677 92.486 0 0 0 13.737125054200234 13.737125054200234 13.737125054200234 9.208187539523749 0 2.75 1.5228787452803376 0 1.274227503252014 + + [Y{I|L}]Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}Q{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}[PA]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}YGAPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.6677;7.8639;7.8639;7.4686;7.1846;7.1658;6.3808;6.1592;6.0624;5.9516 +;-;-;-;-;-;-;-;-;- + 2693 NaN NaN 489859 NaN 17653 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21674 87.256 NaN 991590 35 0 270570 0.261 -1 IYMPMIPEL 9 72 561.782605400617 NaN 0 561.7954711914062 PEAK HCD FTMS 0 0 0 21672 22497.12109375 0.7722258894237506 -1 0.02616119384765625 2 Oxidation (M) _IYMPM(Oxidation (M))IPEL_ ACSS2|p.P269Qfs*69|1|0.29|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant;ENSG00000131069|ENST00000360596|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;nc|ENSG00000131069|Q9NR19-2|ACSS2 11.640296217721598 0.23883959125015683 1 VVQ{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 5 -1 24.425 0 0 2.1778 0 0 131.06951696844163 354.1676424615844 485.23715943002605 0 0 0 0 0 0.4247425010840047 0 0 0 VVQ{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 2.1778 - 228 + NaN NaN 235275 NaN 17654 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21675 87.26 NaN 650730 35 0 214840 0.261 + 5966 FPDQLYDAVF 10 68 607.7901237196654 1213.5656945061307 2 607.790283203125 MULTI HCD FTMS 0 0 0 21672 602497 0.9073933630998745 -1 0.02616119384765625 3 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 18.373094154950223 0.33925629317698053 1 DAV{M(Oxidation (M))|F} 4 6 46.186 0 0 3.8058 0 0 763.353885132464 0 763.353885132464 0 25.646584396390253 0 0 0 1 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 3.8058 + + 312 NaN NaN 191200.6 NaN 17655 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21676 87.263 NaN 272940 35 0 23689 0.261 + -1 CHMLPQLF 8 77 531.2496242591615 1060.4846955851228 2 531.250244140625 MULTI HCD FTMS 0 0 0 21672 59250.43359375 0.04729024572490328 9 -0.2418975830078125 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))HM(Oxidation (M))LPQLF_ REV__ENST00000262348.8_1_1:68591699-68591852:-|nuORF 19.438996006549623 0.45076845602799126 1 {[QG]|[NA]}{M(Oxidation (M))|F}KC(Carbamidomethyl (C)){[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 8 -1 + 42.948 0 0 4.0498 4.0498 80.199 0 0 0 -4.94985051517758 4.275683782313713 -4.94985051517758 0.5739370211789989 0 1.4073871488943874 1.3979400086720375 0 0 {[QG]|[NA]}{M(Oxidation (M))|F}KC(Carbamidomethyl (C)){[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};[HV]VA{[{M(Oxidation (M))|F}C]|[YS]}AAP{M(Oxidation (M))|F};[HV]VA{[{M(Oxidation (M))|F}C]|[YS]}APA{M(Oxidation (M))|F};[HV]{[{M(Oxidation (M))|F}C]|[YS]}[PA]Q{I|L}{M(Oxidation (M))|F};[HV]{[{M(Oxidation (M))|F}C]|[YS]}{[VA]|[{I|L}G]}AAP{M(Oxidation (M))|F};[HV]{[{M(Oxidation (M))|F}C]|[YS]}{[VA]|[{I|L}G]}APA{M(Oxidation (M))|F};[HV]{[{M(Oxidation (M))|F}C]|[YS]}[Q{I|L}]AP{M(Oxidation (M))|F};[HV]{[{M(Oxidation (M))|F}C]|[YS]}[Q{I|L}]PA{M(Oxidation (M))|F};[HV]VA{[{M(Oxidation (M))|F}C]|[YS]}W{[TV]|[{I|L}S]};[HV]{[{M(Oxidation (M))|F}C]|[YS]}{[VA]|[{I|L}G]}W{[TV]|[{I|L}S]} 4.0498;3.9957;3.8081;2.7243;2.6024;2.4147;2.3197;2.132;2.1084;0.71504 -;-;-;-;-;-;-;-;-;- 686 + NaN NaN 128645.2 NaN 17656 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21677 87.266 NaN 939580 35 0 107870 0.261 + 10711 IPYSREGEY 9 90 557.2654542388343 1112.5163555444685 2 557.7784423828125 MULTI HCD FTMS 0 0 0 21672 44264.29296875 0.9102659756405752 1 -0.02616119384765625 5 Unmodified _IPYSREGEY_ ENSG00000158125|ENST00000379416|XDH;XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant 30.636539890814138 0.10832830463492794 1 {I|L}PAD[HS]D{I|L}V{M(Oxidation (M))|F} 10 7 + 53.682 0 0 4.8253 4.8253 90.467 0 0 0 15.54068199846057 7.161699167657943 7.161699167657943 42.756987880070895 0 0.7474250108400471 1.3979400086720375 0.3054621874040891 0 {I|L}PAD[HS]D{I|L}V{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}D[R{M(Oxidation (M))|F}][R{I|L}]{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}W[MT][R{I|L}]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}P[R{M(Oxidation (M))|F}]G{I|L}V{M(Oxidation (M))|F};[{I|L}P]{[{M(Oxidation (M))|F}H]|[RQ]}[HN][WY] 4.8253;0.982;0.80555;0.48897;0.48503 -;-;-;-;- 1533 + NaN NaN 226545.8 NaN 17657 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21678 87.269 NaN 101410 35 0 11816 0.261 + 27859 TDNQEDSAIMF 11 51 635.7686651463135 1269.522777359427 2 635.768798828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _TDNQEDSAIMF_ ENSG00000168795|ENST00000307750|ZBTB5 10.150570793230772 0.3686401556411756 1 [YV]AS{M(Oxidation (M))|F} 5 9 45.56 0 0 3.5887 0 0 0 699.2309664361936 699.2309664361936 26.97621246364342 0 0 0 0 1.1747425010840047 2 0 0 [YV]AS{M(Oxidation (M))|F} 3.5887 - 37 + NaN NaN 104556.8 NaN 17658 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21679 87.273 NaN 68974 35 0 14177 0.264 -1 MFCENEVSLIR 11 39 452.88080895871434 NaN 0 452.8699951171875 PEAK HCD FTMS 0 0 0 21672 28415.798828125 1 0 0 7 Oxidation (M) _M(Oxidation (M))FCENEVSLIR_ ENST00000485336.5_1_6:53155264-53213696:-|nuORF 0.5059551277355931 0.3406848944787997 1 N 1 -1 2.4743 0 0 0.27378 0 0 469.58536562075057 317.10093103580317 786.6862966565537 0 0 0 0 0 0 0 0 0 N 0.27378 + + 4 + NaN NaN 95951.2 NaN 17659 4018 21672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21681 87.278 NaN 935830 35 0 46435 0.327 + 21166 PPQKLQILVD 10 117 575.8429679130824 NaN 0 575.8428344726562 PEAK HCD FTMS 0 0 0 21680 764578.3125 0.4452047062255603 16 -0.42201995849609375 1 Unmodified _PPQKLQILVD_ ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2 12.240655878213236 0.32970798410958835 1 {M(Oxidation (M))|F}W{I|L} 3 9 9.4858 0 0 0.82509 0 0 165.19788543378337 535.2169718557155 700.414857289499 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}W{I|L} 0.82509 - 243 + NaN NaN 222355.1 NaN 17660 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21682 87.282 NaN 936420 35 0 134530 0.261 + -1 LYQLHSTCF 9 98 584.7759688011434 1167.5373846690868 2 584.776123046875 MULTI HCD FTMS 0 0 0 21680 279418.25 0.591315501780186 3 -0.08509063720703125 2 Carbamidomethyl (C) _LYQLHSTC(Carbamidomethyl (C))F_ REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense 36.12702656103203 0.08312389501731911 1 {I|L}YQ{M(Oxidation (M))|F}N 5 -1 76.529 0 0 6.5547 0 0 0 499.1961237793089 499.1961237793089 37.3565745301542 0 0 0 0 1.555462187404089 2 0 1.079689690656103 {I|L}YQ{M(Oxidation (M))|F}N 6.5547 - 2092 + NaN NaN 243404.1 NaN 17661 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21683 87.286 NaN 389080 35 0 112780 0.261 + -1 MISHMIDMSS 10 62 600.2402428302458 1198.4659327272916 2 600.240234375 MULTI HCD FTMS 0 0 0 21680 85387.5234375 0.3465188711583992 3 -0.08509063720703125 3 3 Oxidation (M) _M(Oxidation (M))ISHM(Oxidation (M))IDM(Oxidation (M))SS_ REV__ENST00000379774.4_1_17:10608340-10608511:+|nuORF 1.6526216038709556 0.46655611578153744 1 SR 2 -1 14.464 0 0 1.2069 0 0 937.3526478498062 0 937.3526478498062 0 7.385606273598313 0 0 0 0 0 0 0 SR 1.2069 - 18 NaN NaN 134390.8 NaN 17662 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21684 87.289 NaN 594230 35 0 95420 0.261 + 31784 VYLSNVVLF 9 68 527.30262200734 1052.59069108148 2 527.3026123046875 MULTI HCD FTMS 0 0 0 21680 178592.765625 0.29717862827205094 -2 0.0523223876953125 4 Unmodified _VYLSNVVLF_ ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant 123.45060196383646 0.0010021686353097689 1 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F} 9 2 + 106.65 0 0 10.132 10.132 89.342 0 0 0 0.6964430557396639 16.478174818886373 0.6964430557396639 0.6964430557396639 0 2.274227503252014 1.5228787452803376 1.079689690656103 1.2302046884880937 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F};[YV]TVNVV{I|L}{M(Oxidation (M))|F};[YV]{I|L}SNVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YSGGVV{I|L}{M(Oxidation (M))|F};[YV]TVGGVV{I|L}{M(Oxidation (M))|F};[YV]{I|L}SGGVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YT[QA]V{I|L}{M(Oxidation (M))|F};[YV]T{I|L}[QA]V{I|L}{M(Oxidation (M))|F};[YV]{I|L}T[QA]V{I|L}{M(Oxidation (M))|F};[YV]TVKSP{I|L}{M(Oxidation (M))|F} 10.132;10.066;9.9476;8.0889;8.0227;7.9041;7.7342;7.6681;7.5494;6.6115 -;-;+;-;-;-;-;-;-;- + 966 NaN NaN 165922.9 NaN 17663 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21685 87.292 NaN 132170 35 0 13076 0.261 + 4367 EWLTEASVI 9 42 524.2714453361349 1046.5283377390697 2 524.271484375 MULTI HCD FTMS 0 0 0 21680 29490.294921875 0.7347027741918846 -3 0.07848358154296875 5 Unmodified _EWLTEASVI_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 10.823927491677226 0.26684000660059787 1 QSV{I|L} 4 6 39.725 0 0 3.7959 0 0 601.278123924025 0 601.278123924025 0 35.12070344032047 0 0 0 0.805462187404089 0 0.4247425010840047 0 QSV{I|L} 3.7959 - 42 NaN NaN 111281.4 NaN 17664 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21686 87.296 NaN 154850 35 0 24312 0.261 + 31402 VYALPTIAF 9 47 497.7838295638407 993.5531061944814 2 497.78363037109375 MULTI HCD FTMS 0 0 0 21680 50650.7265625 0.7796531860585358 -2 0.0523223876953125 6 Unmodified _VYALPTIAF_ ENSG00000111371|ENST00000398637|SLC38A1 23.1484247019978 0.1603590852062899 1 T{I|L}PA{M(Oxidation (M))|F} 5 5 43.188 0 0 4.3468 0 0 446.25236258379124 0 446.25236258379124 0 37.61439372640169 0 0 0 1 0 0 0 T{I|L}PA{M(Oxidation (M))|F} 4.3468 - 77 + NaN NaN 113054.1 NaN 17665 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21687 87.299 NaN 230130 35 0 16609 0.261 -1 FYERGVSWM 9 59 595.7667194734298 1189.5188860136595 2 595.7662353515625 MULTI HCD FTMS 0 0 0 21680 24217.515625 0.4706085430431403 6 -0.173583984375 7 Oxidation (M) _FYERGVSWM(Oxidation (M))_ ENST00000570096.1_1_20:37590616-37590736:-|nuORF 13.90604991867851 0.24021115267848145 1 KEQ{M(Oxidation (M))|F} 4 -1 20.974 0 0 1.7632 0 0 639.2964955060562 0 639.2964955060562 0 10.796896906561031 0 0 0 0 0 0.3807196863200844 0 KEQ{M(Oxidation (M))|F} 1.7632 - 162 NaN NaN 127585.2 NaN 17666 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21688 87.302 NaN 80058 35 0 7188.3 0.261 + 14620 LFTNPLSSF 9 44 513.2680053710938 NaN 0 513.2680053710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LFTNPLSSF_ REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF 8.593279151180031 0.2536050107310812 1 W{M(Oxidation (M))|F}D 3 -1 6.0308 0 0 0.58864 0 0 344.2032230451187 229.13454614810783 573.3377691932266 0 0 0 0 0 0 0 0 0 W{M(Oxidation (M))|F}D 0.58864 - 13 + NaN NaN 85133.1 NaN 17667 4019 21680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21690 87.307 NaN 868760 35 0 119210 0.327 + 18919 NAFEELVAF 9 70 520.258389761945 1038.5022265906898 2 520.2584838867188 MULTI HCD FTMS 0 0 0 21689 354765.5625 0.0351934391097378 13 -0.3468475341796875 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 82.5293158979368 0.005033931517079822 1 NA{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 83.612 0 0 8.0512 8.0512 92.924 0 0 0 73.15465986884661 16.478174818886373 16.478174818886373 11.588709367037282 0 2.3252574989159953 0 0.3807196863200844 0 + + NA{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};NA{M(Oxidation (M))|F}EE{I|L}G{I|L}{M(Oxidation (M))|F};NP{[ES]|[DT]|[{I|L}C]}Y{I|L}VA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}EE{I|L}G{I|L}{M(Oxidation (M))|F};NP{[ES]|[DT]|[{I|L}C]}Y{I|L}G{I|L}{M(Oxidation (M))|F} 8.0512;6.9353;6.7002;6.2986;5.5843;4.9475 +;-;-;-;-;- + 194 + NaN NaN 225975.5 NaN 17668 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21691 87.312 NaN 946770 35 0 438570 0.261 + 33904 YLPPLFWRF 9 78 619.8399339872459 1237.6653150412917 2 619.8397216796875 MULTI HCD FTMS 0 0 0 21689 540902.375 1 0 0 2 Unmodified _YLPPLFWRF_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 21.74664581756881 0.17247014374749275 1 [Y{I|L}]PREQ{[CA]|SS}E 9 6 39.208 0 0 3.1679 0 0 0 145.1444159536542 145.1444159536542 15.294933397216703 0 0 0 0 0.9247425010840047 1.6989700043360187 0.4247425010840047 0.3807196863200844 [Y{I|L}]PREQ{[CA]|SS}E 3.1679 - 442 NaN NaN 224117.9 NaN 17669 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21692 87.315 NaN 364130 35 0 34676 0.261 + 30568 VNLPPELRRQ 10 80 611.3563383987387 1220.6981238642772 2 611.3563232421875 MULTI HCD FTMS 0 0 0 21689 307517.96875 0.4285617541436103 13 -0.3468475341796875 3 Unmodified _VNLPPELRRQ_ ENSG00000240505|ENST00000261652|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;nc|ENSG00000240505|O14836-3|TNFRSF13B 4.715918219556657 0.45034159980724314 1 Q 1 9 6.0257 0 0 0.49363 0 0 678.404313905096 411.2230318658813 1089.6273457709774 0 0 0 0 0 0.3807196863200844 0 0 0 + Q 0.49363 + + 26 + NaN NaN 139964.3 NaN 17670 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21693 87.318 NaN 675270 35 0 89811 0.261 + 18908 NAFEDSFSSIL 11 76 615.2882252766974 1228.5618976201947 2 615.2874755859375 MULTI HCD FTMS 0 0 0 21689 269500.3125 0.009834446947836402 28 -0.7623367309570312 4 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 70.49555756994154 0.01484552126421319 1 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 3 + 84.346 0 0 6.8654 6.8654 93.738 0 0 0 21.28795097402272 34.16364405460965 21.28795097402272 35.33864813757771 0 2.5669015600442577 1.6989700043360187 1.274227503252014 0.3494850021680094 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]YRT[QA][WQ];{[RE]|[WV]}[C(Carbamidomethyl (C))M]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[WP][YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[RE]|[WV]}{M(Oxidation (M))|F}Y[TA][PS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[KG]{M(Oxidation (M))|F}{[WN]|[YH]}[YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8654;3.989;3.0919;2.1883;1.5341;1.0117;0.31313;0.29331;0.27049 -;-;+;-;-;-;-;-;- + 713 NaN NaN 186762.4 NaN 17671 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21694 87.322 NaN 862530 35 0 139380 0.261 + 31907 VYNPVIYVF 9 88 557.3026990500616 1112.5908451669231 2 557.3032836914062 MULTI HCD FTMS 0 0 0 21689 210189.21875 0.6088030609708655 -2 0.05559539794921875 5 Unmodified _VYNPVIYVF_ ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3 93.88341677533236 0.004424206486747196 1 [YV]N[VP]{I|L}YV{M(Oxidation (M))|F} 9 0 + 82.022 0 0 7.3722 7.3722 93.379 0 0 0 19.503187623076954 14.973024840566467 14.973024840566467 19.085142482848298 0 2.2302046884880937 1.3979400086720375 0 0.9876954943324545 + + [YV]N[VP]{I|L}YV{M(Oxidation (M))|F};[YV]GG[VP]{I|L}YV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[TP]{I|L}YV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[VP]{I|L}YV{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AV[TP]{I|L}YV{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AT[VP]{I|L}YV{M(Oxidation (M))|F};[YV]N[VP]{I|L}{M(Oxidation (M))|F}[YV];[YV]GG[VP]{I|L}{M(Oxidation (M))|F}[YV];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[TP]{I|L}{M(Oxidation (M))|F}[YV];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[VP]{I|L}{M(Oxidation (M))|F}[YV] 7.3722;5.6568;5.6192;5.4163;4.6686;4.4874;4.3793;3.2922;2.6264;2.4234 +;-;-;-;-;-;-;-;-;- + 976 NaN NaN 219880.8 NaN 17672 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21695 87.325 NaN 84058 35 0 14093 0.261 + 16990 LYINPEAFQN 10 45 604.8017168977663 1207.5888808623324 2 604.8021240234375 MULTI HCD FTMS 0 0 0 21689 61532.85546875 0.3881241016610253 6 -0.1537322998046875 6 Unmodified _LYINPEAFQN_ ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;nc|ENSG00000170820|P23945-4|FSHR 15.248480904072842 0.3684828712757339 1 {I|L}Y{I|L} 3 7 47.435 0 0 3.9281 0 0 0 815.333399545274 815.333399545274 37.971062485323515 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y{I|L} 3.9281 + + 42 + NaN NaN 100084.7 NaN 17673 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21696 87.328 NaN 207340 35 0 22320 0.263 + 7281 FTHANCFI 8 46 476.7208594227563 951.4271659123126 2 476.72076416015625 MULTI HCD FTMS 0 0 0 21689 89112.234375 0.8354938572735735 -4 0.10791778564453125 7 Unmodified _FTHANCFI_ ENST00000358598.6_1_17:66526593-66526758:+|nuORF 2.577480529830294 0.5381683276125971 1 H 1 7 6.9897 0 0 0.73465 0 0 203.04281789587986 608.3034761341016 811.3462940299814 0 0 0 0 0 0 0 0 0 + H 0.73465 + + 12 + NaN NaN 104211.9 NaN 17674 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21697 87.332 NaN 61302 35 0 13067 0.261 -1 MFCENEVSLIR 11 33 452.88080895871434 NaN 0 452.8810119628906 PEAK HCD FTMS 0 0 0 21689 8260.935546875 0.2907162876835475 2 -0.05565643310546875 8 Oxidation (M) _M(Oxidation (M))FCENEVSLIR_ ENST00000485336.5_1_6:53155264-53213696:-|nuORF 0.5059551277355931 0.3406848944787997 1 Q 1 -1 1.9897 0 0 0.22016 0 0 419.80298647035994 352.8623446100219 772.6653310803819 0 0 0 0 0 0 0 0 0 Q 0.22016 - 1 + NaN NaN 97879.1 NaN 17675 4020 21689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21699 87.337 NaN 1168900 35 0 36343 0.327 -1 0 120 567.3304148038226 1132.646276674445 2 567.330322265625 MULTI HCD FTMS 0 0 0 21698 1314598.875 0.33987223626544055 35 -0.9418182373046875 1 NaN NaN 1 Y{M(Oxidation (M))|F}NQK 5 -1 17.395 0 0 1.5358 0 0 166.14523042637808 283.11835258827267 449.26358301465075 0 0 0 0 0 0.6549471895720985 0 0 0.2614393726401688 Y{M(Oxidation (M))|F}NQK 1.5358 - 1230 + NaN NaN 268230.6 NaN 17676 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21700 87.341 NaN 1037100 35 0 184180 0.261 + 34658 YPSNIFISF 9 75 544.2768232843174 1086.5390936354347 2 544.27685546875 MULTI HCD FTMS 0 0 0 21698 647849.5 1 0 0 2 Unmodified _YPSNIFISF_ ENSG00000140006|ENST00000620954|WDR89 92.4914307365334 0.004460681868130716 1 {[TV]|[{I|L}S]}[YN]P{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9 4 + 76.453 0 0 7.0364 7.0364 91.226 0 0 0 11.54901959985743 12.018856817346943 11.54901959985743 11.54901959985743 0 2 1.154901959985743 0.6694451763165201 1.079689690656103 {[TV]|[{I|L}S]}[YN]P{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YT]{[NV]|[RG]}P{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}P{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YN]P{M(Oxidation (M))|F}{I|L}AY;[YT]{I|L}N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[SG]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}P[SG]VS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[SG]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VS{M(Oxidation (M))|F} 7.0364;5.9735;5.5056;5.1187;5.0495;5.0049;4.8361;4.8114;4.7525;4.3353 -;-;-;-;-;-;-;-;-;- 693 NaN NaN 250778 NaN 17677 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21701 87.345 NaN 436400 35 0 12289 0.261 -1 0 110 589.3430503555608 1176.6715477779214 2 589.3431396484375 MULTI HCD FTMS 0 0 0 21698 243237.828125 0.17746426848094202 44 -1.188812255859375 3 NaN NaN 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 4 -1 17.511 0 0 1.4882 0 0 603.3817005841812 0 603.3817005841812 0 1.825031801593438 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 1.4882 - 553 NaN NaN 164828.5 NaN 17678 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21702 87.348 NaN 541030 35 0 104540 0.261 + 33846 YLKYLLEIL 9 82 584.3565847607532 NaN 0 584.3565063476562 PEAK HCD FTMS 0 0 0 21698 190150.015625 0.4310240148812644 12 -0.3173370361328125 4 Unmodified _YLKYLLEIL_ ENST00000520248.1_1_8:79672597-79674655:-|nuORF 2.302733041254933 0.2840881193086663 1 VVC{I|L}AYQ 7 8 21.318 0 0 1.8272 0 0 114.15854085059466 273.12384973697505 387.2823905875697 0 0 0 0 0 0 0 0 0.3807196863200844 VVC{I|L}AYQ 1.8272 - 401 + NaN NaN 177428.6 NaN 17679 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21703 87.351 NaN 130610 35 0 12064 0.261 -1 0 54 597.8562607199011 1193.6979685066021 2 597.856201171875 MULTI HCD FTMS 0 0 0 21698 153236.6875 0.08004380330418968 -34 0.794342041015625 5 NaN NaN 1 D 1 -1 5.4846 0 0 0.45946 0 0 649.3904256372647 426.26484631474204 1075.6552719520068 0 0 0 0 0 0 0 0 0 D 0.45946 - 8 + NaN NaN 95766.2 NaN 17680 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21704 87.355 NaN 140660 35 0 11160 0.261 + 13724 KYPLNLYLLF 10 55 642.3739101990147 1282.7332674648294 2 642.8751220703125 MULTI HCD FTMS 0 0 0 21698 37532.12890625 0.30714706949301845 7 -0.1697540283203125 6 Unmodified _KYPLNLYLLF_ ENSG00000155957|ENST00000358230|TMBIM4 9.38312468134398 0.42334543440173333 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 7 30.445 0 0 2.3735 0 0 891.4847279279312 0 891.4847279279312 0 27.346368802282015 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L}{M(Oxidation (M))|F} 2.3735 + + 14 NaN NaN 105319.8 NaN 17681 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21705 87.358 NaN 239450 35 0 41899 0.261 + 24245 RYFLPPYTF 9 58 602.3135428996179 NaN 0 602.331787109375 PEAK HCD FTMS 0 0 0 21698 29095.99609375 0.6554093893873935 2 -0.05233001708984375 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.1998403495282098 1 PR 2 8 12.831 0 0 1.0669 0 0 526.2457858951358 420.1777742975219 946.4235601926578 0 0 0 0 0 0.4247425010840047 0 0 0 PR 1.0669 - 97 + NaN NaN 118422.3 NaN 17682 4021 21698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21707 87.363 NaN 860120 35 0 82451 0.327 + 16968 LYIENQFFI 9 80 593.8106779337152 1185.6068029342302 2 593.8109741210938 MULTI HCD FTMS 0 0 0 21706 488544.03125 0.32380550935078123 6 -0.14360809326171875 1 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 107.1870275148908 0.00340162908551068 1 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 98.101 0 0 8.2743 8.2743 90.966 0 0 0 17.86098023303616 91.6470593548587 17.86098023303616 9.018637558036673 0 2.3494850021680094 1.2218487496163564 0.3252574989159953 1.2302046884880937 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}NQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}N[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]AA[DV]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}KKN{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L} 8.2743;7.5136;7.4976;7.4976;6.737;6.737;5.687;5.1361;4.9264;4.0481 +;-;-;-;-;-;-;-;-;- + 702 NaN NaN 213725.1 NaN 17683 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21708 87.367 NaN 269910 35 0 47871 0.264 + 25204 SAPCAPFF 8 46 420.19123372846536 838.3679145237307 2 420.1913146972656 MULTI HCD FTMS 0 0 0 21706 315749.46875 0.7029671469448707 -4 0.1112518310546875 2 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 2.8892196856762586 0.5377058178582064 1 {I|L} 1 -1 15.044 0 0 1.7945 0 0 570.1894304922839 152.07158838443596 722.2610188767198 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.7945 - 21 + NaN NaN 125453.7 NaN 17684 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21709 87.371 NaN 303770 35 0 40883 0.261 + 31059 VSWFDLEL 8 50 504.7554588418199 1007.4963647504399 2 504.75518798828125 MULTI HCD FTMS 0 0 0 21706 133514.21875 0.049507409700546366 18 -0.48035430908203125 3 Unmodified _VSWFDLEL_ ENST00000537971.5_1_12:3395045-3395321:+|nuORF 12.531546534597751 0.5015908124873912 1 E{I|L} 2 6 24.464 0 0 2.4282 0 0 747.3583664279447 0 747.3583664279447 0 7.474250108400469 0 0 0 0.3494850021680094 0 0 0 + E{I|L} 2.4282 + + 16 NaN NaN 143846.4 NaN 17685 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21710 87.374 NaN 247810 35 0 31564 0.261 -1 RRNCLLPF 8 55 538.2937137156815 1074.572874498163 2 538.2946166992188 MULTI HCD FTMS 0 0 0 21706 66899.7578125 0.9218054629486299 -2 0.05565643310546875 4 Carbamidomethyl (C) _RRNC(Carbamidomethyl (C))LLPF_ ENSG00000165671|ENST00000439151|NSD1;ENST00000602285.1_1_5:176562104-176563088:+|nuORF;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant 19.438996006549623 0.45076845602799126 1 {I|L}P{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.6938 0 0 699.3548191997111 0 699.3548191997111 0 31.593793813122062 0 0 0 1.3494850021680094 0 0 0 {I|L}P{M(Oxidation (M))|F} 3.6938 + + 42 NaN NaN 113254 NaN 17686 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21711 87.377 NaN 92750 35 0 28663 0.261 -1 0 30 456.2802021569841 455.2729256903841 1 456.2802734375 MULTI HCD FTMS 0 0 0 21706 63424.78125 1 0 0 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 2.7642 0 0 0.60715 0 0 149.77049756714035 155.45002161197502 305.2205191791154 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60715 - 1 + NaN NaN 115049 NaN 17687 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21712 87.381 NaN 158960 35 0 15689 0.261 + 7227 FSSIFRVPF 9 56 550.2986699937837 NaN 0 550.2868041992188 PEAK HCD FTMS 0 0 0 21706 8488.9306640625 0.8431231073130582 1 -0.02618408203125 6 Unmodified _FSSIFRVPF_ ENST00000540458.5_1_12:6956081-6956183:+|nuORF 19.256988751693697 0.19238547928067054 1 {I|L}S 2 8 13.756 0 0 1.2521 0 0 234.1221069779986 661.3184908502561 895.4405978282548 0 0 0 0 0 0 0 0.8807196863200843 0 {I|L}S 1.2521 - 145 + NaN NaN 115461.7 NaN 17688 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21713 87.384 NaN 57732 35 0 5193.2 0.261 + 14239 LCEFGFHGI 9 36 511.7437742609672 NaN 0 511.7435607910156 PEAK HCD FTMS 0 0 0 21706 6292.6689453125 0.23487958093503442 1 -0.02618408203125 7 Unmodified _LCEFGFHGI_ REV__ENSG00000154997|ENST00000388975|SEPTIN14 4.3292370932331545 0.2742679634796037 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102713.1 NaN 17689 4022 21706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21715 87.389 NaN 1121700 35 0 180670 0.327 + 10690 IPVWDQEFL 9 99 573.7949978938075 1145.5754428544149 2 573.7841186523438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _IPVWDQEFL_ ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 21.536976647645854 0.1742816388551942 1 {M(Oxidation (M))|F}APAN{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 9 7 57.445 0 0 5.0145 0 0 165.10015677347252 0 165.10015677347252 0 27.329022044314467 0 0 0 0.7302046884880937 0 0 1.1549471895720984 {M(Oxidation (M))|F}APAN{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 5.0145 - 2191 + NaN NaN 251128.2 NaN 17690 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21716 87.393 NaN 288060 35 0 41782 0.263 + 31503 VYGCYPGP 8 53 428.18821382380776 854.3618747144155 2 428.1887512207031 MULTI HCD FTMS 0 0 0 21714 337570.65625 0.40476868339670136 3 -0.07189178466796875 2 Unmodified _VYGCYPGP_ ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1;nc|ENSG00000123358|P22736-3|NR4A1 2.8892196856762586 0.5377058178582064 1 T 1 8 3.4949 0 0 0.40906 0 0 184.16486651304677 566.1324556940061 750.297322207053 0 0 0 0 0 0 0 0 0 T 0.40906 - 10 + NaN NaN 123773.8 NaN 17691 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21717 87.397 NaN 475820 35 0 92393 0.261 + 10702 IPWPLEEQF 9 68 579.7944881752409 1157.5744234172817 2 579.7951049804688 MULTI HCD FTMS 0 0 0 21714 272843.875 0.8080334274511531 3 -0.07189178466796875 3 Unmodified _IPWPLEEQF_ ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2 92.4914307365334 0.004460681868130716 1 QS{I|L}{I|L}EEQ{M(Oxidation (M))|F} 8 4 65.583 0 0 5.6656 0 0 165.07822525508863 0 165.07822525508863 0 56.62971259689115 0 0 0 1 0 1.0752574989159953 1.4476212463643423 QS{I|L}{I|L}EEQ{M(Oxidation (M))|F} 5.6656 - 186 + NaN NaN 157212.6 NaN 17692 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21718 87.4 NaN 349300 35 0 63738 0.261 + 15330 LPAVFEEVL 9 76 508.78677869539445 1015.5590044575889 2 509.30621337890625 MULTI HCD FTMS 0 0 0 21714 43465.1015625 0.48172845586489554 3 -0.07189178466796875 4 Unmodified _LPAVFEEVL_ ENSG00000013364|ENST00000357402|MVP 15.847184025352803 0.2234401846867398 1 V{I|L} 2 7 24.464 0 0 2.4089 0 0 785.3961017355413 0 785.3961017355413 0 20.695990759876107 0 0 0 0.3494850021680094 0 0 0 + V{I|L} 2.4089 + + 88 NaN NaN 143782.4 NaN 17693 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21719 87.404 NaN 293280 35 0 23149 0.261 + -1 LYAAYALCLL 10 68 585.8135793710412 NaN 0 585.8135986328125 PEAK HCD FTMS 0 0 0 21714 102875.2109375 0.5089262104113381 16 -0.42176055908203125 5 Carbamidomethyl (C) _LYAAYALC(Carbamidomethyl (C))LL_ REV__ENSG00000137860|ENST00000347644|SLC28A2 24.67388899826682 0.24277442800835877 1 {I|L}{M(Oxidation (M))|F} 2 -1 17.206 0 0 1.4711 0 0 131.095189916862 775.3395120623951 906.4347019792572 0 0 0 0 0 0.7742275032520141 0 0 0 {I|L}{M(Oxidation (M))|F} 1.4711 - 423 + NaN NaN 132048.6 NaN 17694 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21720 87.407 NaN 84266 35 0 11937 0.262 -1 0 30 479.3845639384519 478.3772874718519 1 479.38433837890625 MULTI HCD FTMS 0 0 0 21714 25400.576171875 0.0038657601368318685 40 -1.0830841064453125 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87315.7 NaN 17695 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21721 87.41 NaN 272640 35 0 35584 0.261 + 3477 EGKDKHRM 8 36 500.7528227546679 999.4910925761358 2 500.753173828125 MULTI HCD FTMS 0 0 0 21714 57123.9765625 0.408498131277517 5 -0.11742401123046875 7 Unmodified _EGKDKHRM_ ENSG00000196792|ENST00000357479|STRN3;nc|ENSG00000196792|Q13033-2|STRN3;STRN3|p.N279S|1|0.38|ENSG00000196792|chr14:30936505-30936505|T/C|missense_variant 7.289230182591677 0.5311777711368266 1 MT 2 8 21.766 0 0 2.1777 0 0 0 764.3993155089618 764.3993155089618 -1.4215905896025305 0 -1.4215905896025305 0 0 0 0 0.3807196863200844 0 MT 2.1777 - 30 + NaN NaN 140184.8 NaN 17696 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21722 87.414 NaN 54180 35 0 8091.9 0.261 -1 MLGEYYNVVY 10 36 633.7870685032659 NaN 0 634.2454223632812 PEAK HCD FTMS 0 0 0 21714 18230.23046875 0.9649123550609612 -1 0.02618408203125 8 Oxidation (M) _M(Oxidation (M))LGEYYNVVY_ tr|U7SGN0|U7SGN0_FUSNUDUF368domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02254PE=4SV=1 1.4819007175156935 0.33891598740166873 1 {I|L} 1 -1 11.99 0 0 0.94738 0 0 380.1714747977442 769.2857760065061 1149.4572508042504 0 0 0 0 0 0.5 0 0 0 {I|L} 0.94738 + + 1 + NaN NaN 109514.4 NaN 17697 4023 21714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21724 87.419 NaN 651510 35 0 172070 0.327 -1 IYMPMIPEL 9 52 561.7829613130797 NaN 0 561.7953491210938 PEAK HCD FTMS 0 0 0 21723 28746.029296875 0.7265138256118072 -2 0.05571746826171875 1 Oxidation (M) _IYMPM(Oxidation (M))IPEL_ ACSS2|p.P269Qfs*69|1|0.29|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant;ENSG00000131069|ENST00000360596|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;nc|ENSG00000131069|Q9NR19-2|ACSS2 12.531546534597751 0.23452071659215576 1 VVQ{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 5 -1 23.928 0 0 2.1335 0 0 131.07115307686905 354.16652286565795 485.237675942527 0 0 0 0 0 0.5 0 0 0 VVQ{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 2.1335 - 66 + NaN NaN 175808.1 NaN 17698 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21725 87.423 NaN 701250 35 0 33677 0.261 + 9984 IEKKTKGTVF 10 111 575.8429679130824 NaN 0 575.843017578125 PEAK HCD FTMS 0 0 0 21723 489451.125 0.2850014717326879 21 -0.5788650512695312 2 Unmodified _IEKKTKGTVF_ tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1 11.494710602746466 0.33034640988000663 1 A[RV]T 4 9 8.6587 0 0 0.75314 0 0 105.07833496894825 614.3443087213499 719.4226436902982 0 0 0 0 0 0.6747425010840047 0 0.4247425010840047 0.4247425010840047 A[RV]T 0.75314 - 297 + NaN NaN 192520.8 NaN 17699 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21726 87.427 NaN 504410 35 0 160770 0.261 + 5967 FPDQLYDAVF 10 60 607.7901237196654 1213.5656945061307 2 607.790283203125 MULTI HCD FTMS 0 0 0 21723 428674.90625 0.6456078036217788 5 -0.123992919921875 3 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 23.789781309258295 0.28859042913526417 1 DAV{M(Oxidation (M))|F} 4 6 46.67 0 0 3.8457 0 0 763.3552959219969 0 763.3552959219969 0 20.98381297763133 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 3.8457 + + 257 NaN NaN 157379.5 NaN 17700 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21727 87.43 NaN 310790 35 0 44085 0.262 + 15604 LPEAFPITL 9 51 500.7898293055721 999.5651056779442 2 500.7892150878906 MULTI HCD FTMS 0 0 0 21723 104088.8671875 0.45367534104372426 -3 0.0818634033203125 4 Unmodified _LPEAFPITL_ ENSG00000175073|ENST00000310421|VCPIP1 34.10243960390752 0.09241788333544565 1 T{I|L} 2 7 29.464 0 0 2.9477 0 0 767.4219496755406 0 767.4219496755406 0 13.10902448877151 0 0 0 0.5 0 0.3494850021680094 0 + T{I|L} 2.9477 + + 31 NaN NaN 126349.6 NaN 17701 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21728 87.433 NaN 186770 35 0 18522 0.261 + 19386 NPELGVSCGC 10 53 489.70609356392333 977.3976341946467 2 489.7061462402344 MULTI HCD FTMS 0 0 0 21723 22511.09765625 0.40703637909432294 -2 0.05571746826171875 5 Unmodified _NPELGVSCGC_ REV__ENSG00000082781|ENST00000296181|ITGB5 5.731851221503515 0.44496410492002586 1 {I|L} 1 -1 10.485 0 0 1.0727 0 0 155.09517740761902 706.1933687799436 861.2885461875626 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 1.0727 + + 4 + NaN NaN 122452.2 NaN 17702 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21729 87.436 NaN 169300 35 0 16243 0.261 + 7226 FSSFSPLLI 9 54 505.7809403271648 NaN 0 505.781005859375 PEAK HCD FTMS 0 0 0 21723 30974.75390625 0.8725291431296532 -2 0.05571746826171875 6 Unmodified _FSSFSPLLI_ REV__ENSG00000182093|ENST00000649170|GET1;REV__ENST00000487869.1_1_21:40752343-40763801:+|nuORF 21.74664581756881 0.17567436591797916 1 {I|L}{I|L} 2 -1 12.58 0 0 1.2461 0 0 131.09280470703703 649.2677706354124 780.3605753424495 0 0 0 0 0 0.7887254899964358 0 0 0 {I|L}{I|L} 1.2461 + + 13 + NaN NaN 117412.1 NaN 17703 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21730 87.44 NaN 111810 35 0 19440 0.261 -1 0 36 631.3989733785588 630.3916969119588 1 633.7876586914062 MULTI HCD FTMS 0 0 0 21723 7732.654296875 0.12517978045916042 -6 0.16696929931640625 7 NaN NaN 1 D 1 -1 4.9164 0 0 0.7799 0 0 52.031490304567406 460.3067721002563 512.3382624048237 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.7799 - 3 + NaN NaN 114765.1 NaN 17704 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21731 87.443 NaN 62523 35 0 7817.1 0.261 + -1 HPSFAWKLVC 10 39 622.8183265224685 NaN 0 623.2908325195312 PEAK HCD FTMS 0 0 0 21723 19238.51953125 0.46226369935529793 -7 0.1931304931640625 8 Carbamidomethyl (C) _HPSFAWKLVC(Carbamidomethyl (C))_ REV__ENST00000370766.7_1_X:134476327-134476507:-|nuORF 3.5964929083625545 0.337106189561315 1 {I|L} 1 -1 11.99 0 0 0.9641 0 0 853.4319583654463 274.08371912174067 1127.515677487187 0 0 0 0 0 0.5 0 0 0 {I|L} 0.9641 + + 4 + NaN NaN 97500.5 NaN 17705 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21732 87.446 NaN 52260 35 0 4721.9 0.261 + -1 VLYVPFCGQ 9 40 541.76904296875 NaN 0 541.76904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _VLYVPFC(Carbamidomethyl (C))GQ_ REV__ENSG00000010322|ENST00000345716|NISCH;REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF;REV__nc|ENSG00000010322|Q9Y2I1-2|NISCH 2.0597508629832335 0.2852655770354268 1 D 1 -1 3.0989 0 0 0.28812 0 0 353.24891248746263 604.2784517877561 957.5273642752188 0 0 0 0 0 0 0 0 0 D 0.28812 - 1 + NaN NaN 104828.4 NaN 17706 4024 21723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21734 87.451 NaN 780550 35 0 131860 0.327 + 31785 VYLSNVVLF 9 65 527.30262200734 1052.59069108148 2 527.302734375 MULTI HCD FTMS 0 0 0 21733 482849.46875 0.8034622359021634 4 -0.091217041015625 1 Unmodified _VYLSNVVLF_ ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant 114.6490535036381 0.0021834323520089267 1 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F} 9 2 + 107.33 0 0 10.197 10.197 89.669 0 0 0 1.2763625255165323 16.478174818886373 1.2763625255165323 1.2763625255165323 0 2.774227503252014 1.5228787452803376 0.7302046884880937 1.1989700043360187 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F};[YV]{I|L}SNVV{I|L}{M(Oxidation (M))|F};[YV]TVNVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YSGGVV{I|L}{M(Oxidation (M))|F};[YV]{I|L}SGGVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YT[QA]V{I|L}{M(Oxidation (M))|F};[YV]{I|L}T[QA]V{I|L}{M(Oxidation (M))|F};[YV]TVGGVV{I|L}{M(Oxidation (M))|F};[YV]TVKSP{I|L}{M(Oxidation (M))|F};[{I|L}V]YSKSP{I|L}{M(Oxidation (M))|F} 10.197;10.076;9.5537;8.1833;8.0621;7.7761;7.6548;7.5398;7.4434;7.3216 -;+;-;-;-;-;-;-;-;- + 986 NaN NaN 212019.5 NaN 17707 4025 21733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21735 87.456 NaN 169710 35 0 14497 0.261 -1 MTLLILTFL 9 66 553.8302059349212 1105.6458589366423 2 553.8300170898438 MULTI HCD FTMS 0 0 0 21733 56603.65234375 0.29787883155884415 -6 0.173583984375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MTLLILTFL_ ENST00000574867.5_1_17:5302907-5307466:-|nuORF 2.302733041254933 0.33356062215410776 1 G 1 -1 5.4846 0 0 0.49605 0 0 552.8695660673048 492.7215670221313 1045.5911330894362 0 0 0 0 0 0 0 0 0 G 0.49605 - 33 + NaN NaN 103392.8 NaN 17708 4025 21733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21737 87.461 NaN 865100 35 0 26095 0.327 + 14119 LAAPLRHAER 10 111 567.3304148038226 1132.646276674445 2 567.3302612304688 MULTI HCD FTMS 0 0 0 21736 947853.0625 0.24505493358414854 40 -1.0911483764648438 1 Unmodified _LAAPLRHAER_ ENSG00000150471|ENST00000683033|ADGRL3 9.38312468134398 0.42334543440173333 1 {[ES]|[DT]|[{I|L}C]}VVQN[KQ]N 9 9 20.476 0 0 1.8078 0 0 0 103.04042879730414 103.04042879730414 0.3071023936342101 0 0 0 0 0.8252574989159953 0 0.9124379954164592 0 {[ES]|[DT]|[{I|L}C]}VVQN[KQ]N 1.8078 - 879 NaN NaN 238765 NaN 17709 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21738 87.465 NaN 857870 35 0 170420 0.261 + 29148 TYINPFVSF 9 67 544.2768232843174 1086.5390936354347 2 544.2769165039062 MULTI HCD FTMS 0 0 0 21736 525429.625 0.8110365524709057 5 -0.13408660888671875 2 Unmodified _TYINPFVSF_ ENSG00000113615|ENST00000398844|SEC24A;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant 84.5221896805406 0.004669506596793478 1 [YT]{I|L}NP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F} 9 0 + 99.025 0 0 9.1138 9.1138 94.701 0 0 0 23.429089686793816 75.29676584209078 23.429089686793816 12.258177263343413 0 2.892159058960253 1.3979400086720375 0.805462187404089 0.4247425010840047 + + [YT]{I|L}NP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]N{I|L}P{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]{I|L}GGP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]N[VP]{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YT]GG{I|L}P{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[SG]{I|L}P{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]N{M(Oxidation (M))|F}[VP]{I|L}S{M(Oxidation (M))|F};[YT]N{M(Oxidation (M))|F}[{I|L}P]VS{M(Oxidation (M))|F};[YT]GG[VP]{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[SG][VP]{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9.1138;7.9857;7.8755;6.9028;6.7473;6.1967;6.0727;5.8362;5.6644;5.1138 +;-;-;-;-;-;-;-;-;- + 703 NaN NaN 229112 NaN 17710 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21739 87.469 NaN 330220 35 0 33901 0.261 -1 0 85 611.3560559615195 1220.6975589898389 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21736 271174.71875 0.18891928547088663 -15 0.37221527099609375 3 NaN NaN 1 N 1 -1 6.7217 0 0 0.55064 0 0 238.1442275462826 865.4631441705686 1103.6073717168513 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.55064 - 42 + NaN NaN 140752.3 NaN 17711 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21740 87.472 NaN 569050 35 0 102390 0.261 + 31908 VYNPVIYVF 9 77 557.3026990500616 1112.5908451669231 2 557.302490234375 MULTI HCD FTMS 0 0 0 21736 229822.671875 0.6656704228223068 4 -0.0945892333984375 4 Unmodified _VYNPVIYVF_ ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3 93.88341677533236 0.004424206486747196 1 [YV]N[VP]{I|L}YV{M(Oxidation (M))|F} 9 0 + 84.632 0 0 7.6067 7.6067 93.876 0 0 0 20.96664959441256 66.04811556341673 20.96664959441256 20.00508444608478 0 2.274227503252014 1.5228787452803376 0 1.079689690656103 + + [YV]N[VP]{I|L}YV{M(Oxidation (M))|F};[YV]GG[VP]{I|L}YV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[TP]{I|L}YV{M(Oxidation (M))|F};[YV]N[VP]{I|L}{M(Oxidation (M))|F}[YV];[YV]GG[VP]{I|L}{M(Oxidation (M))|F}[YV];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG[TP]{I|L}YV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[TP]{I|L}{M(Oxidation (M))|F}[YV];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG[TP]{I|L}{M(Oxidation (M))|F}[YV] 7.6067;5.8087;5.2014;4.6139;3.4721;3.4034;2.2086;1.0668 +;-;-;-;-;-;-;- + 944 NaN NaN 177483.1 NaN 17712 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21741 87.475 NaN 389370 35 0 65775 0.261 + 31445 VYDELFYTL 9 71 581.786529687782 1161.558506442364 2 581.787353515625 MULTI HCD FTMS 0 0 0 21736 143917.671875 0.7439520328753855 1 -0.03256988525390625 5 Unmodified _VYDELFYTL_ ENSG00000103966|ENST00000220325|EHD4 58.678817012210395 0.019429721296335044 1 [YT]{I|L}QN{M(Oxidation (M))|F}YT 8 5 61.948 0 0 5.3332 0 0 0 128.0661926667191 128.0661926667191 46.596244348790066 0 0 0 0 1.3807196863200843 1.3979400086720375 0.3807196863200844 0 [YT]{I|L}QN{M(Oxidation (M))|F}YT 5.3332 - 1061 NaN NaN 147934 NaN 17713 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21742 87.479 NaN 394230 35 0 125500 0.261 + 33905 YLPPLFWRF 9 78 619.8399339872459 1237.6653150412917 2 619.8397827148438 MULTI HCD FTMS 0 0 0 21736 118947.9453125 0.21990649479492486 6 -0.15366363525390625 6 Unmodified _YLPPLFWRF_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 15.847184025352803 0.2234401846867398 1 [Y{I|L}]PP{I|L} 5 4 37.307 0 0 3.0143 0 0 0 651.3027437799436 651.3027437799436 19.348331157524967 0 0 0 0 0.5 1.6989700043360187 0 0 + [Y{I|L}]PP{I|L} 3.0143 + + 81 + NaN NaN 150433.4 NaN 17714 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21743 87.482 NaN 499510 35 0 60845 0.261 + 18909 NAFEDSFSSIL 11 69 615.2882252766974 1228.5618976201947 2 615.2872314453125 MULTI HCD FTMS 0 0 0 21736 94926.828125 0.003464013998580046 34 -0.9309616088867188 7 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 59.012897905743536 0.044407695078131824 1 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 3 + 79.977 0 0 6.5098 6.5098 93.05 0 0 0 14.955004219222332 54.273106351659564 14.955004219222332 35.154182602175396 0 2.471848749616356 1.6989700043360187 1.305462187404089 0.3054621874040891 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][DP]SS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DSYAS{I|L}{I|L};[YN][DP]SSYAS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}A[WQ]{M(Oxidation (M))|F}SS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[NP]SS{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[WQ]YAS{I|L}{I|L} 6.5098;3.6484;3.3487;3.1048;2.6967;2.4161;2.0672;2.0489;1.888;1.4152 -;-;-;-;-;-;-;-;-;- 451 NaN NaN 173977.9 NaN 17715 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21744 87.485 NaN 212710 35 0 25670 0.264 + 28607 TQKDRCMA 8 47 476.7208594227563 951.4271659123126 2 476.72076416015625 MULTI HCD FTMS 0 0 0 21736 88805.6640625 0.8326195312653363 2 -0.0455322265625 8 Unmodified _TQKDRCMA_ REV__ZNF804A|p.E289Q|1|0.13|ENSG00000170396|chr2:184936261-184936261|G/C|missense_variant 0.7936320650641473 0.540814922690045 1 H 1 -1 6.9897 0 0 0.73465 0 0 203.04271826961264 608.3022020406951 811.3449203103078 0 0 0 0 0 0 0 0 0 H 0.73465 - 12 + NaN NaN 118681.1 NaN 17716 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21745 87.489 NaN 156330 35 0 28403 0.261 + -1 VVTNDCGVK 9 51 496.2482187789989 NaN 0 496.24859619140625 PEAK HCD FTMS 0 0 0 21736 19220.16796875 0.7223482690575218 1 -0.03256988525390625 9 Carbamidomethyl (C) _VVTNDC(Carbamidomethyl (C))GVK_ REV__ENSG00000145708|ENST00000274368|CRHBP 2.9952420565917617 0.2807323172627736 1 VT 2 -1 7.9588 0 0 0.80353 0 0 99.06919234372863 688.2860811822874 787.355273526016 0 0 0 0 0 0 0 0 0 VT 0.80353 + + 5 + NaN NaN 116470.8 NaN 17717 4026 21736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21747 87.494 NaN 450300 35 0 15855 0.327 -1 0 101 589.3431010203685 1176.671649107537 2 589.3431396484375 MULTI HCD FTMS 0 0 0 21746 425881.875 0.09306305984434492 -22 0.5340042114257812 1 NaN NaN 1 {I|L}{[HG]|PP}N 4 -1 12.039 0 0 1.0231 0 0 737.4098377912125 0 737.4098377912125 0 0.049406363485857696 0 0 0 0.4247425010840047 0 0 0 {I|L}{[HG]|PP}N 1.0231 - 261 NaN NaN 153864.9 NaN 17718 4027 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21748 87.498 NaN 167890 35 0 8201.4 0.261 -1 0 72 597.8562607199011 1193.6979685066021 2 597.8561401367188 MULTI HCD FTMS 0 0 0 21746 243230.53125 0.12705245146302552 -28 0.6481399536132812 2 NaN NaN 1 D 1 -1 9.2082 0 0 0.7714 0 0 105.0797295881094 970.5471895807249 1075.6269191688343 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 D 0.7714 - 30 + NaN NaN 110168.2 NaN 17719 4027 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21749 87.502 NaN 129250 35 0 33293 0.264 + 12239 KLETIYEEMF 10 55 434.88224889097876 NaN 0 434.8824157714844 PEAK HCD FTMS 0 0 0 21746 68840.125 0.5021893576983607 23 -0.6323394775390625 3 Unmodified _KLETIYEEMF_ REV__tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115905.7 NaN 17720 4027 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21751 87.506 NaN 177300 35 0 28236 0.327 + 25205 SAPCAPFF 8 48 420.19123372846536 838.3679145237307 2 420.1913146972656 MULTI HCD FTMS 0 0 0 21750 218372.796875 0.48617311249107376 2 -0.0490570068359375 1 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 13.539 0 0 1.6149 0 0 570.1893694571277 152.0714052789672 722.2607747360948 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.6149 - 19 + NaN NaN 113951.2 NaN 17721 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21752 87.511 NaN 321730 35 0 47174 0.261 + 16969 LYIENQFFI 9 62 593.8106779337152 1185.6068029342302 2 593.8109741210938 MULTI HCD FTMS 0 0 0 21750 98031.3515625 0.06497488392974982 12 -0.3367462158203125 2 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 57.72198328787511 0.020768266150574023 1 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 65.741 0 0 5.5449 5.5449 87.173 0 0 0 2.191512336730028 46.69978440589176 2.191512336730028 9.208187539523749 0 2.305462187404089 0 0 0.7614393726401688 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.5449;4.7682;4.7682;3.353 +;-;-;- + 360 NaN NaN 138911.8 NaN 17722 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21753 87.514 NaN 416570 35 0 63827 0.261 + 31909 VYNPVIYVF 9 78 557.3026990500616 1112.5908451669231 2 557.3027954101562 MULTI HCD FTMS 0 0 0 21750 130814.4765625 0.3788979007780414 6 -0.17043304443359375 3 Unmodified _VYNPVIYVF_ ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3 93.88341677533236 0.004424206486747196 1 [YV]N[VP]{I|L}YV{M(Oxidation (M))|F} 9 0 + 71.92 0 0 6.4642 6.4642 91.713 0 0 0 20.87128018967597 50.149087242336776 20.87128018967597 19.322581265925436 0 1.8494850021680094 1.5228787452803376 0 1.0114393726401687 + + [YV]N[VP]{I|L}YV{M(Oxidation (M))|F};[YV]GG[VP]{I|L}YV{M(Oxidation (M))|F};[YV]N[VP]{I|L}{M(Oxidation (M))|F}[YV];[YV]GG[VP]{I|L}{M(Oxidation (M))|F}[YV] 6.4642;4.7275;3.9833;2.8633 +;-;-;- + 650 NaN NaN 145404.1 NaN 17723 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21754 87.518 NaN 372560 35 0 107280 0.261 -1 IQHLCLNKIP 10 79 618.350650417688 1234.686747902176 2 619.8695068359375 MULTI HCD FTMS 0 0 0 21750 10501.9560546875 0.8190595578145907 -1 0.01296234130859375 4 Carbamidomethyl (C) _IQHLC(Carbamidomethyl (C))LNKIP_ ENSG00000122435|ENST00000370141|TRMT13;ENST00000482437.5_1_1:100606401-100609704:+|nuORF;ENST00000493651.1_1_1:100608680-100609704:+|nuORF 5.731851221503515 0.44496410492002586 1 [Y{I|L}]G{M(Oxidation (M))|F} 4 -1 28.672 0 0 2.3222 0 0 0 751.4388590684447 751.4388590684447 10.255762612236907 0 0 0 0 0 2 0 0 [Y{I|L}]G{M(Oxidation (M))|F} 2.3222 - 130 NaN NaN 144590.9 NaN 17724 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21755 87.521 NaN 254660 35 0 24400 0.262 + 32990 YASLETVGLF 10 78 550.2870612801431 1098.5595696270861 2 550.2871704101562 MULTI HCD FTMS 0 0 0 21750 50339.80078125 0.374132833846558 1 -0.036102294921875 5 Unmodified _YASLETVGLF_ REV__ENSG00000151136|ENST00000280758|ABTB3;REV__nc|ENSG00000151136|A6QL63-2|ABTB3;REV__nc|ENSG00000151136|A6QL63-4|ABTB3;REV__nc|ENSG00000151136|A6QL63-5|ABTB3 48.345845343767074 0.08380532769255708 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[DA]|[EG]}{I|L}S{I|L}{M(Oxidation (M))|F} 10 -1 + 66.648 0 0 6.0669 6.0669 83.875 0 0 0 13.135270773654604 42.976146931408294 13.135270773654604 1.5186375580366729 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[DA]|[EG]}{I|L}S{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[DA]|[EG]}{I|L}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[DA]|[EG]}{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{I|L}SS{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}S{I|L}S{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{I|L}SS{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}S{I|L}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[DA]|[EG]}S{I|L}S{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[DA]|[EG]}{I|L}SS{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{I|L}S{I|L}S{M(Oxidation (M))|F} 6.0669;5.9286;5.7929;5.2204;5.2204;5.0822;5.0822;4.9511;4.9511;4.9464 -;-;-;-;-;-;-;-;-;- 803 NaN NaN 126984.5 NaN 17725 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21756 87.524 NaN 227950 35 0 43881 0.261 -1 NAAMVFEFL 9 45 529.2543168002026 1056.494080667205 2 529.2544555664062 MULTI HCD FTMS 0 0 0 21750 90756.453125 0.7484903361021297 4 -0.10813140869140625 6 Oxidation (M) _NAAM(Oxidation (M))VFEFL_ ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1 32.78568957990786 0.09846250359632436 1 {[WN]|[YH]}CV{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 8 -1 {[WN]|[YH]} + + 58.933 2.2185 0.73918 5.5782 5.5782 62.574 0 0 0 0 58.44843468456581 0 0 0 1.805462187404089 0 0.4247425010840047 0 {[WN]|[YH]}CV{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5.5782 - 46 + NaN NaN 118557.9 NaN 17726 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21757 87.528 NaN 249090 35 0 27567 0.261 + 8006 GFQRCREL 8 46 504.7554588418199 1007.4963647504399 2 504.7554931640625 MULTI HCD FTMS 0 0 0 21750 36325.19921875 0.013469475663442199 24 -0.6719818115234375 7 Unmodified _GFQRCREL_ REV__ENSG00000117000|ENST00000372771|RLF;REV__RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant 10.823927491677226 0.514154816617796 1 E{I|L} 2 -1 23.856 0 0 2.3679 0 0 747.3588696144857 0 747.3588696144857 0 8.371804965004639 0 0 0 0.28872548999643577 0 0 0 E{I|L} 2.3679 + + 14 NaN NaN 121948.9 NaN 17727 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21758 87.531 NaN 80736 35 0 20527 0.261 + 25651 SHLPGEEH 8 38 453.2096818797742 NaN 0 453.20892333984375 PEAK HCD FTMS 0 0 0 21750 17834.25 0.43192759731683816 -38 0.8756256103515625 8 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87318.4 NaN 17728 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21759 87.534 NaN 79169 35 0 13364 0.261 + 15602 LPEAFLYIG 9 44 511.7802101088169 1021.5458672844338 2 511.7802734375 MULTI HCD FTMS 0 0 0 21750 23200.84375 0.7444215845831926 -1 0.01296234130859375 9 Unmodified _LPEAFLYIG_ ENSG00000165349|ENST00000374299|SLC7A3 16.942295170755138 0.21397866736869717 1 {I|L}P{[CP]|[EA]}{M(Oxidation (M))|F} 5 4 26.823 0 0 2.6257 0 0 0 461.2367342584594 461.2367342584594 19.83288122256525 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 + {I|L}P{[CP]|[EA]}{M(Oxidation (M))|F} 2.6257 + + 5 + NaN NaN 100844.1 NaN 17729 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21760 87.538 NaN 70167 35 0 8653.1 0.261 + -1 YVKLLSANQSM 11 34 635.3300331801685 NaN 0 635.3295288085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _YVKLLSANQSM(Oxidation (M))_ REV__ENSG00000213809|ENST00000240618|KLRK1;REV__ENST00000540267.5_1_12:10525715-10532097:-|nuORF 2.282774691075616 0.33564456907475565 1 S 1 -1 7.7423 0 0 0.61028 0 0 565.2142522960806 613.3724459283811 1178.5866982244618 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.61028 + + 2 + NaN NaN 93886.5 NaN 17730 4028 21750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21762 87.543 NaN 412860 35 0 71693 0.327 + 5484 FIWEYDPTL 9 75 592.2866053596007 NaN 0 592.3063354492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FIWEYDPTL_ ENSG00000134533|ENST00000256953|RERG 20.453626601364224 0.18435338882370536 1 PHED 4 7 19.061 0 0 1.6118 0 0 375.1786861517914 326.1717623346313 701.3504484864227 0 0 0 0 0 0.7742275032520141 0 0.3807196863200844 0 PHED 1.6118 - 389 + NaN NaN 145951.8 NaN 17731 4029 21761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21763 87.547 NaN 79816 35 0 18479 0.263 -1 0 38 456.77233386641933 911.5301147996387 2 456.7726135253906 MULTI HCD FTMS 0 0 0 21761 26871.044921875 0.5211754919033547 1 -0.0129547119140625 2 NaN NaN 1 W 1 -1 2.7642 0 0 0.30325 0 0 419.2924266666293 303.1450289361938 722.4374556028231 0 0 0 0 0 0 0 0 0 W 0.30325 - 2 + NaN NaN 89348.8 NaN 17732 4029 21761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21764 87.551 NaN 54803 35 0 5480.6 0.261 -1 FQCKKCFYK 9 38 436.8798015364906 1307.617575209672 3 436.87939453125 MULTI HCD FTMS 0 0 0 21761 14674.5341796875 0.5332547436131924 -12 0.3171234130859375 3 2 Carbamidomethyl (C) _FQC(Carbamidomethyl (C))KKC(Carbamidomethyl (C))FYK_ ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 1.1933415558491238 0.3419706357095994 1 K 1 -1 2.4743 0 0 0.18922 0 0 969.5798687661157 206.92025171451408 1176.50012048063 0 0 0 0 0 0 0 0 0 K 0.18922 + + 1 + NaN NaN 87790.5 NaN 17733 4029 21761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21766 87.556 NaN 840920 35 0 206810 0.327 -1 IFRTSCLPE 9 82 561.7829613130797 NaN 0 561.7955322265625 PEAK HCD FTMS 0 0 0 21765 22287.373046875 0.5632807400249498 3 -0.0985260009765625 1 Carbamidomethyl (C) _IFRTSC(Carbamidomethyl (C))LPE_ ENSG00000122484|ENST00000610020|RPAP2;ENST00000477322.1_1_1:92798926-92846428:+|nuORF 10.823927491677226 0.2427956001690155 1 VVQ{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 5 -1 25.42 0 0 2.2665 0 0 131.0703029614195 354.16685238506545 485.23715534648494 0 0 0 0 0 0.5 0 0 0.3252574989159953 VVQ{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 2.2665 - 466 + NaN NaN 204753.2 NaN 17734 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21767 87.56 NaN 443760 35 0 18407 0.261 + 9985 IEKKTKGTVF 10 101 575.8429679130824 NaN 0 575.8429565429688 PEAK HCD FTMS 0 0 0 21765 399814.75 0.23280729443708337 27 -0.7460708618164062 2 Unmodified _IEKKTKGTVF_ tr|U7SKS6|U7SKS6_FUSNUnon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01920PE=3SV=1 13.042465956692817 0.3290217458104555 1 {M(Oxidation (M))|F}W{I|L} 3 10 8.9621 0 0 0.77954 0 0 165.24474037025044 535.2211397760374 700.4658801462879 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}W{I|L} 0.77954 - 179 + NaN NaN 169076.3 NaN 17735 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21768 87.564 NaN 313620 35 0 17665 0.261 -1 0 83 509.3061278987398 1016.5977028642797 2 509.3061218261719 MULTI HCD FTMS 0 0 0 21765 172171.296875 0.6338531648528822 2 -0.05907440185546875 3 NaN NaN 1 E{I|L}M{[TV]|[{I|L}S]} 5 -1 12.703 0 0 1.2496 0 0 425.3020618504109 0 425.3020618504109 0 0.887634161076388 0 0 0 0 0 0 0 E{I|L}M{[TV]|[{I|L}S]} 1.2496 - 136 + NaN NaN 135208 NaN 17736 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21769 87.567 NaN 264140 35 0 74027 0.261 + 5968 FPDQLYDAVF 10 48 607.7901237196654 1213.5656945061307 2 607.7904052734375 MULTI HCD FTMS 0 0 0 21765 182522.90625 0.2748894579474265 11 -0.31392669677734375 4 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 19.361941925380144 0.3300069447713393 1 DAV{M(Oxidation (M))|F} 4 6 42.423 0 0 3.4957 0 0 763.3556097577941 0 763.3556097577941 0 25.60016905927597 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 3.4957 + + 113 NaN NaN 128089.7 NaN 17737 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21770 87.57 NaN 406810 35 0 55105 0.262 + 31158 VTYPPPLTL 9 43 500.7898293055721 999.5651056779442 2 500.7897644042969 MULTI HCD FTMS 0 0 0 21765 184773.5625 0.8053426965637895 3 -0.0985260009765625 5 Unmodified _VTYPPPLTL_ ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF;nc|ENSG00000075275|Q9NYQ6|CELSR1 26.88365393820708 0.12808753336095696 1 T{I|L} 2 7 29.464 0 0 2.9477 0 0 767.4215640999614 0 767.4215640999614 0 9.709543871828 0 0 0 0.5 0 0.3494850021680094 0 + T{I|L} 2.9477 + + 68 NaN NaN 140945.2 NaN 17738 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21771 87.574 NaN 295830 35 0 62240 0.261 + 34818 YRFWILPQL 9 53 618.350650417688 1234.686747902176 2 618.852294921875 MULTI HCD FTMS 0 0 0 21765 125549.96875 0.776913766534029 -1 0.0129547119140625 6 Unmodified _YRFWILPQL_ ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 14.838274106304384 0.23215694253501695 1 W[{I|L}P]Q{I|L} 5 4 37.218 0 0 3.0144 0 0 579.3172067652957 0 579.3172067652957 0 26.760912590556813 0 0 0 1.5 0 0 0 W[{I|L}P]Q{I|L} 3.0144 - 38 NaN NaN 120865.8 NaN 17739 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21772 87.577 NaN 232480 35 0 24383 0.261 + -1 LYLNMQFIL 9 58 585.8135793710412 NaN 0 585.813720703125 PEAK HCD FTMS 0 0 0 21765 125929.6171875 0.6229769277724344 23 -0.630340576171875 7 Oxidation (M) _LYLNM(Oxidation (M))QFIL_ REV__ENST00000472667.1_1_2:170355634-170355844:+|nuORF 23.1484247019978 0.16626532474190622 1 {I|L}{M(Oxidation (M))|F} 2 -1 20.217 0 0 1.7285 0 0 131.0944696003417 775.3377779596311 906.4322475599729 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7285 - 20 + NaN NaN 118303.9 NaN 17740 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21773 87.58 NaN 276160 35 0 16669 0.261 + -1 SCEDCQHWP 9 56 581.2085665436454 1160.4025801540906 2 581.2089233398438 MULTI HCD FTMS 0 0 0 21765 83941.7421875 0.42930025118229403 -5 0.1041717529296875 8 Carbamidomethyl (C) _SCEDC(Carbamidomethyl (C))QHWP_ REV__ENSG00000147548|ENST00000317025|NSD3;REV__ENST00000528828.1_1_8:38133161-38137268:-|nuORF;REV__nc|ENSG00000147548|Q9BZ95-2|NSD3;REV__nc|ENSG00000147548|Q9BZ95-4|NSD3;REV__nc|ENSG00000147548|Q9BZ95-5|NSD3 1.844237919475145 0.33703635659052655 1 A{M(Oxidation (M))|F} 2 -1 19.949 0 0 1.7191 0 0 924.2922230451187 0 924.2922230451187 0 5.723418215173197 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 1.7191 - 71 NaN NaN 129094.8 NaN 17741 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21774 87.583 NaN 169650 35 0 11502 0.261 -1 LMNLYKRVF 9 69 600.3340342714716 1198.6535156097432 2 600.334228515625 MULTI HCD FTMS 0 0 0 21765 69948.265625 0.24048053680574752 -19 0.46680450439453125 9 Oxidation (M) _LM(Oxidation (M))NLYKRVF_ ENSG00000167721|ENST00000301364|TSR1 4.75600775471527 0.31496297302216103 1 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 7.4338 0 0 0.62018 0 0 806.4514414904057 0 806.4514414904057 0 3.252574989159953 0 0 0 0 0 0.3252574989159953 0 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 0.62018 - 51 + NaN NaN 106903.2 NaN 17742 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21775 87.587 NaN 181460 35 0 12706 0.261 + 11343 IYNGFSSVLQF 11 57 637.824591727212 1273.634630521224 2 637.8251953125 MULTI HCD FTMS 0 0 0 21765 50386.0234375 0.4386698505896873 -1 0.0129547119140625 10 Unmodified _IYNGFSSVLQF_ ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF 93.44831873261192 0.01243483317044255 1 Q{I|L}VSS[YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 8 77.528 0 0 6.0871 0 0 165.0786856568996 0 165.0786856568996 0 61.418271902055324 0 0 0 2.274227503252014 0 0.7059771852360797 1.8851518780601921 Q{I|L}VSS[YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6.0871 - 411 + NaN NaN 110728.7 NaN 17743 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21776 87.59 NaN 150830 35 0 22975 0.261 + -1 DIRQFLSKVF 10 46 647.8610949056016 1293.707636878003 2 647.8613891601562 MULTI HCD FTMS 0 0 0 21765 40078.0234375 0.7738089006953286 1 -0.03949737548828125 11 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DIRQFLSKVF_ REV__ENST00000429442.6_1_8:135602540-135612746:-|nuORF 8.155526934196011 0.43213520406898465 1 EV{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.4115 0 0 900.5251332013687 0 900.5251332013687 0 27.703037561203843 0 0 0 0.5 0 0 0 EV{M(Oxidation (M))|F} 2.4115 - 9 NaN NaN 110594.1 NaN 17744 4030 21765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21778 87.595 NaN 306430 35 0 71567 0.327 + 33530 YIGTIIVIIY 10 72 584.3565847607532 NaN 0 584.3566284179688 PEAK HCD FTMS 0 0 0 21777 89218.40625 0.20223651066651177 22 -0.5908432006835938 1 Unmodified _YIGTIIVIIY_ REV__ENST00000396045.7_1_7:36894090-36894324:-|nuORF 7.910154910731844 0.33341429274560913 1 {M(Oxidation (M))|F}TD 3 -1 16.682 0 0 1.4299 0 0 112.19124461740633 688.3460787408811 800.5373233582875 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}TD 1.4299 - 111 + NaN NaN 135872.4 NaN 17745 4031 21777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21779 87.599 NaN 153840 35 0 8750.8 0.261 + 8689 HFVPFLPWI 9 57 578.3208370757744 1154.6271212183487 2 578.3209838867188 MULTI HCD FTMS 0 0 0 21777 75790.9609375 0.33439359287453746 26 -0.706573486328125 2 Unmodified _HFVPFLPWI_ REV__ENSG00000109184|ENST00000334635|DCUN1D4;REV__ENST00000477560.5_1_4:52775105-52779747:+|nuORF;REV__ENST00000508257.5_1_4:52775567-52779747:+|nuORF;REV__nc|ENSG00000109184|Q92564-3|DCUN1D4 2.302733041254933 0.33356062215410776 1 A 1 -1 3.9794 0 0 0.34465 0 0 165.13263156375382 915.4379976861936 1080.5706292499474 0 0 0 0 0 0 0 0 0 A 0.34465 - 8 + NaN NaN 102949.3 NaN 17746 4031 21777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21780 87.603 NaN 61960 35 0 22247 0.262 -1 TAPACFHY 8 30 483.7104478457627 NaN 0 483.71038818359375 PEAK HCD FTMS 0 0 0 21777 56293.0390625 0.8895413926345374 4 -0.104766845703125 3 Carbamidomethyl (C) _TAPAC(Carbamidomethyl (C))FHY_ nc|ENSG00000157211|Q5VXM1-1|CDCP2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89920.7 NaN 17747 4031 21777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21781 87.606 NaN 309120 35 0 29019 0.261 + 7854 FYSSLKIAF 9 56 538.2937137156815 1074.572874498163 2 538.7951049804688 MULTI HCD FTMS 0 0 0 21777 33569.98828125 0.6113547036850234 4 -0.104766845703125 4 Unmodified _FYSSLKIAF_ tr|U7T4V7|U7T4V7_FUSNU2-C-methyl-D-erythritol4-phosphatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispDPE=3SV=1 12.531546534597751 0.2520865569484384 1 A[{M(Oxidation (M))|F}T]{I|L}{I|L}EA{M(Oxidation (M))|F} 8 6 35.909 0 0 3.3417 0 0 164.13610952423056 0 164.13610952423056 0 22.48818998398079 0 0 0 0 0 0.7059771852360797 0 A[{M(Oxidation (M))|F}T]{I|L}{I|L}EA{M(Oxidation (M))|F} 3.3417 - 132 + NaN NaN 129887.9 NaN 17748 4031 21777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21782 87.61 NaN 107840 35 0 18681 0.261 + -1 DIRQFLSKVF 10 32 647.8610949056016 1293.707636878003 2 647.8609619140625 MULTI HCD FTMS 0 0 0 21777 35357.12109375 0.6826597885490171 2 -0.05902862548828125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DIRQFLSKVF_ REV__ENST00000429442.6_1_8:135602540-135612746:-|nuORF 4.897010918128616 0.4493830473644964 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6209 0 0 1029.5622132256815 0 1029.5622132256815 0 16.365006360318688 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6209 + + 9 NaN NaN 98427.9 NaN 17749 4031 21777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21784 87.615 NaN 823490 35 0 24447 0.327 + 27347 SYRRRLPSV 9 113 567.3304148038226 1132.646276674445 2 567.330322265625 MULTI HCD FTMS 0 0 0 21783 715771.0625 0.18505318716780844 46 -1.1857681274414062 1 Unmodified _SYRRRLPSV_ ENST00000313465.5_2_8:145752728-145753355:-|nuORF;nc|nan|Q6P1X6-2|C8orf82 6.723162845929126 0.3000504726104499 1 GH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V 5 7 15.816 0 0 1.3964 0 0 308.1835998555361 268.12388025455317 576.3074801100893 0 0 0 0 0 1.1307196863200843 0 0.5891368308784531 0 GH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V 1.3964 - 882 + NaN NaN 209281.3 NaN 17750 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21785 87.619 NaN 526290 35 0 36059 0.261 -1 0 92 611.3560559615195 1220.6975589898389 2 611.356201171875 MULTI HCD FTMS 0 0 0 21783 406590.90625 0.2832596778998605 -9 0.225555419921875 2 NaN NaN 1 T{[SA]|[TG]} 3 -1 11.809 0 0 0.96741 0 0 943.5507069318375 0 943.5507069318375 0 4.5737117279411175 0 0 0 0.3494850021680094 0 0.3252574989159953 0 T{[SA]|[TG]} 0.96741 - 91 NaN NaN 164283.9 NaN 17751 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21786 87.623 NaN 488100 35 0 100500 0.261 + 29149 TYINPFVSF 9 53 544.2768232843174 1086.5390936354347 2 544.27685546875 MULTI HCD FTMS 0 0 0 21783 235303.734375 0.3632074029153376 11 -0.31716156005859375 3 Unmodified _TYINPFVSF_ ENSG00000113615|ENST00000398844|SEC24A;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant 80.6760300276096 0.005633624786464751 1 [YT]{I|L}NP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F} 9 0 + 95.582 0 0 8.7969 8.7969 94.636 0 0 0 24.366130211356065 78.59243748081781 24.366130211356065 13.455612550363796 0 2.9489700043360187 1.5228787452803376 0.7742275032520141 0.4247425010840047 + + [YT]{I|L}NP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]{I|L}GGP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]{I|L}NP[YV]A{M(Oxidation (M))|F};[YT]{I|L}GGP[YV]A{M(Oxidation (M))|F} 8.7969;7.5585;3.8277;2.9802 +;-;-;- + 174 NaN NaN 158479.7 NaN 17752 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21787 87.626 NaN 461690 35 0 49838 0.261 + 18910 NAFEDSFSSIL 11 62 615.2882252766974 1228.5618976201947 2 615.2869873046875 MULTI HCD FTMS 0 0 0 21783 77908.8046875 0.0028430022932480524 40 -1.0546798706054688 4 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 35.079672537005266 0.16863851843823818 1 [YN]AWE{M(Oxidation (M))|F}SS{I|L} 9 5 68.13 0 0 5.5455 0 0 0 128.07211933469594 128.07211933469594 47.195450583659934 0 0 0 0 1.2783773187068794 1.6989700043360187 0.8807196863200843 0.3252574989159953 [YN]AWE{M(Oxidation (M))|F}SS{I|L} 5.5455 - 480 NaN NaN 146736.9 NaN 17753 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21788 87.629 NaN 198040 35 0 21006 0.262 + 7777 FYNPVTSLL 9 61 527.2841898749849 1052.5538268167697 2 527.3024291992188 MULTI HCD FTMS 0 0 0 21783 37415.16015625 0.5897030330828595 1 -0.03945159912109375 5 Unmodified _FYNPVTSLL_ ENSG00000165733|ENST00000374518|BMS1 21.536976647645854 0.1742816388551942 1 T{[QD]|[EN]|[WG]|[KD]|[RS]}V{I|L}{M(Oxidation (M))|F} 6 6 37.625 0 0 3.5746 0 0 331.2091236798844 0 331.2091236798844 0 7.191512336730028 0 0 0 0.8807196863200843 0 0 0.7302046884880937 T{[QD]|[EN]|[WG]|[KD]|[RS]}V{I|L}{M(Oxidation (M))|F} 3.5746 - 155 NaN NaN 116867 NaN 17754 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21789 87.633 NaN 506050 35 0 78260 0.261 + 8358 GYISSAFLF 9 76 502.7581095478044 1003.5016661624088 2 502.758056640625 MULTI HCD FTMS 0 0 0 21783 127308.8203125 0.9599006636677347 1 -0.03945159912109375 6 Unmodified _GYISSAFLF_ ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131471|Q16853-2|AOC3 85.35673624503755 0.00464763827098139 1 [YG]{I|L}S{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 61.193 0 0 6.098 6.098 86.755 0 0 0 54.20364358414254 1.6630926501522225 1.6630926501522225 7.940680443502757 0 2.1861818737241734 1.3010299956639813 0 0 + + [YG]{I|L}S{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YG]{I|L}S{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}{M(Oxidation (M))|F} 6.098;5.3067 +;- + 124 + NaN NaN 154920.5 NaN 17755 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21790 87.636 NaN 137030 35 0 20101 0.261 -1 KERCLCSG 8 35 476.7208594227563 951.4271659123126 2 476.7207946777344 MULTI HCD FTMS 0 0 0 21783 42422.109375 0.3977390090596095 8 -0.22861480712890625 7 Carbamidomethyl (C) _KERCLC(Carbamidomethyl (C))SG_ ENST00000594846.1_1_19:51453353-51456194:-|nuORF 2.577480529830294 0.5381683276125971 1 S 1 -1 2.7642 0 0 0.29053 0 0 434.07930269942 427.3037508600219 861.3830535594419 0 0 0 0 0 0 0 0 0 S 0.29053 + + 6 + NaN NaN 104498.4 NaN 17756 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21791 87.639 NaN 634760 35 0 114900 0.261 + 12776 KYDVLFALF 9 61 558.3103241922371 1114.606095451274 2 558.3104858398438 MULTI HCD FTMS 0 0 0 21783 84767.28125 0.014293131438554468 -6 0.15366363525390625 8 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 5 + 71.603 0 0 6.424 6.424 86.51 0 0 0 10.90166223149673 40.763612033208716 10.90166223149673 6.00833760139686 0 2.75 1.0457574905606752 0 0 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][{I|L}P]YKA{I|L}{M(Oxidation (M))|F};[YT][{I|L}P]{M(Oxidation (M))|F}SK{I|L}{M(Oxidation (M))|F};[YT][{I|L}P]YAK{I|L}{M(Oxidation (M))|F};[YT][{I|L}P]{M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F} 6.424;5.885;5.393;5.3484;4.8093;4.3173;3.3251;2.6064;2.3363;1.7298 -;-;-;-;-;-;-;-;-;- 601 NaN NaN 179181.7 NaN 17757 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21792 87.642 NaN 444050 35 0 50458 0.261 + 26704 SYAYILEAF 9 55 538.7686947223544 1075.5228365115088 2 538.7688598632812 MULTI HCD FTMS 0 0 0 21783 70868.171875 0.29018235649240653 -3 0.07202911376953125 9 Unmodified _SYAYILEAF_ ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000155465|ENST00000674313|SLC7A7 96.28474662873226 0.004361282420133734 1 Y{I|L}{I|L}EA{M(Oxidation (M))|F} 6 3 68.766 0 0 6.3937 0 0 321.13100409139 0 321.13100409139 0 42.56773019264563 0 0 0 2.56295299324845 0 0.3494850021680094 0 + Y{I|L}{I|L}EA{M(Oxidation (M))|F} 6.3937 + + 197 + NaN NaN 146453 NaN 17758 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21793 87.646 NaN 46986 35 0 6334.7 0.262 -1 HMPSPMGL 8 32 451.19923265492326 900.3839123766465 2 451.2000427246094 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Oxidation (M) _HM(Oxidation (M))PSPM(Oxidation (M))GL_ ENSG00000282815|ENST00000695840|TEX13C 0.7936320650641473 0.540814922690045 1 Y 1 -1 5.4846 0 0 0.60913 0 0 560.0587913823091 174.2370546930297 734.2958460753388 0 0 0 0 0 0 0 0 0 Y 0.60913 - 1 + NaN NaN 87205.6 NaN 17759 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21794 87.649 NaN 217550 35 0 43535 0.261 -1 VKMKKFKLFA 10 56 628.3822653452587 1254.7499777573173 2 628.3826293945312 MULTI HCD FTMS 0 0 0 21783 17440.98828125 0.049086308749529246 -8 0.19602203369140625 11 Oxidation (M) _VKM(Oxidation (M))KKFKLFA_ tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1 3.5964929083625545 0.45626689593999237 1 {I|L}{I|L} 2 -1 9.464 0 0 0.75425 0 0 686.4763093996986 339.09250818424067 1025.5688175839393 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.75425 - 35 + NaN NaN 127624.2 NaN 17760 4032 21783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21796 87.654 NaN 1230600 35 0 58219 0.327 -1 0 100 589.3431010203685 1176.671649107537 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21795 1499590.625 0.32768826350356794 -16 0.4286041259765625 1 NaN NaN 1 {M(Oxidation (M))|F}N 2 -1 14.068 0 0 1.1956 0 0 897.5223255841812 0 897.5223255841812 0 4.31413403487344 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 1.1956 - 97 NaN NaN 270088.1 NaN 17761 4033 21795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21797 87.658 NaN 758650 35 0 45007 0.261 -1 0 106 597.8562607199011 1193.6979685066021 2 597.8564453125 MULTI HCD FTMS 0 0 0 21795 622215.875 0.32501697813876507 -22 0.5653305053710938 2 NaN NaN 1 D 1 -1 8.1209 0 0 0.68031 0 0 105.07930776065344 970.5454192855865 1075.62472704624 0 0 0 0 0 0.3054621874040891 0 0.3807196863200844 0 D 0.68031 - 81 + NaN NaN 199804.7 NaN 17762 4033 21795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21798 87.662 NaN 403750 35 0 26692 0.261 + 23671 RQEVRRVF 8 88 545.3168782979817 1088.6192036627633 2 545.3169555664062 MULTI HCD FTMS 0 0 0 21795 306966.625 1 0 0 3 Unmodified _RQEVRRVF_ REV__ENSG00000038382|ENST00000344204|TRIO;REV__ENSG00000160145|ENST00000682506|KALRN;REV__ENST00000393501.5_1_3:124103736-124207203:+|nuORF;REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF;REV__nc|ENSG00000038382|O75962-2|TRIO;REV__nc|ENSG00000038382|O75962-4|TRIO;REV__nc|ENSG00000038382|O75962-5|TRIO;REV__nc|ENSG00000160145|O60229-2|KALRN;REV__nc|ENSG00000160145|O60229|KALRN 7.910154910731844 0.5302565402355366 1 VS{M(Oxidation (M))|F} 3 -1 19.693 0 0 1.809 0 0 737.4403229028009 0 737.4403229028009 0 9.894461703093855 0 0 0 0 0 0 0 VS{M(Oxidation (M))|F} 1.809 - 350 + NaN NaN 140917.4 NaN 17763 4033 21795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21799 87.665 NaN 249370 35 0 120640 0.261 -1 0 37 606.3694677211702 1210.7243825091402 2 606.3692016601562 MULTI HCD FTMS 0 0 0 21795 74382.7109375 0.0995183872099852 -7 0.193115234375 4 NaN NaN 1 Q 1 -1 5.4846 0 0 0.453 0 0 538.339996378084 541.2876070611936 1079.6276034392777 0 0 0 0 0 0 0 0 0 Q 0.453 - 4 + NaN NaN 126269.1 NaN 17764 4033 21795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21800 87.669 NaN 122800 35 0 10744 0.261 + 20389 NYVKANYLPY 10 59 622.8183265224685 NaN 0 622.818603515625 PEAK HCD FTMS 0 0 0 21795 14774.19921875 0.35499488278076374 2 -0.04573822021484375 5 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 10.073929032068715 0.33156240198919784 1 G{I|L} 2 9 10.969 0 0 0.88203 0 0 221.0762259354537 849.4040966275589 1070.4803225630126 0 0 0 0 0 0 0 0 0 G{I|L} 0.88203 - 49 + NaN NaN 95553.7 NaN 17765 4033 21795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21801 87.672 NaN 104650 35 0 6787.8 0.261 + 3960 EQKITYYF 8 43 546.2738973329082 1090.5332417326163 2 547.7756958007812 MULTI HCD FTMS 0 0 0 21795 27171.458984375 0.2833964113218844 27 -0.7378463745117188 6 Unmodified _EQKITYYF_ REV__tr|U7SMJ0|U7SMJ0_FUSNUAcyl-CoAthioesterhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01888PE=4SV=1 6.723162845929126 0.5320176132289695 1 C{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7848 0 0 822.4451812851538 0 822.4451812851538 0 9.006375246153906 0 0 0 0 0 0 0 C{M(Oxidation (M))|F} 1.7848 - 22 + NaN NaN 97091.5 NaN 17766 4033 21795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21803 87.677 NaN 1914100 35 0 244680 0.327 + 27258 SYPFTFEAF 9 90 554.7531086362407 1107.4916643392812 2 554.7532958984375 MULTI HCD FTMS 0 0 0 21802 941738.625 0.777315505279237 -1 0.02285003662109375 1 Unmodified _SYPFTFEAF_ ENSG00000011143|ENST00000393119|MKS1;nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1 149.9946105101851 8.83195450578534E-06 1 {[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 9 0 + 101.48 0 0 9.1632 9.1632 90.217 0 0 0 4.203103093438969 5.686814654273675 4.203103093438969 4.203103093438969 0 3.2302046884880937 0 2.2346368802282015 0 + + {[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}TE{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GNPTEEA{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}TE{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F}TE{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AT{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 9.1632;8.7836;8.5793;8.3719;8.3448;8.1318;7.9924;7.9653;7.7881;7.761 +;-;-;-;-;-;-;-;-;- + 2600 NaN NaN 369720 NaN 17767 4034 21802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21804 87.681 NaN 884930 35 0 154250 0.263 + 1708 CHASTTGF 8 59 412.1751535033214 822.3357540734428 2 412.1756896972656 MULTI HCD FTMS 0 0 0 21802 564729.0625 0.07768481486530487 -4 0.12137603759765625 2 Unmodified _CHASTTGF_ REV__chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5929 0 0 657.2572914043006 0 657.2572914043006 0 1.8618187372417339 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5929 + + 16 + NaN NaN 209672.5 NaN 17768 4034 21802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21805 87.685 NaN 373830 35 0 64201 0.261 -1 0 95 619.8695022068749 1237.7244514805498 2 619.8696899414062 MULTI HCD FTMS 0 0 0 21802 167451.0625 0.2524024572719322 -9 0.22554779052734375 3 NaN NaN 1 D 1 -1 10.555 0 0 0.85274 0 0 105.07943564232035 1014.5670870416624 1119.6465226839828 0 0 0 0 0 0.3252574989159953 0 0.3807196863200844 0 D 0.85274 - 198 + NaN NaN 158132.2 NaN 17769 4034 21802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21806 87.688 NaN 114750 35 0 15062 0.261 + 34085 YNLVLMLQLH 10 53 622.3474647307514 1242.6803765283028 2 622.3474731445312 MULTI HCD FTMS 0 0 0 21802 6473.015625 0.053799966014075 -6 0.17043304443359375 4 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 1 [YN]{I|L} 3 -1 27.447 0 0 2.2087 0 0 0 849.467832156324 849.467832156324 14.259687322722812 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 2.2087 + + 41 NaN NaN 96336.5 NaN 17770 4034 21802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21807 87.692 NaN 174440 35 0 29054 0.262 + 30851 VQNNVLLIF 9 48 530.3128973886231 1058.6112418440462 2 530.313232421875 MULTI HCD FTMS 0 0 0 21802 19583.912109375 0.27070347959600427 -2 0.0623016357421875 5 Unmodified _VQNNVLLIF_ ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6 28.486842064014134 0.11819662193267319 1 {I|L}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 7 7 56.274 0 0 5.3158 0 0 165.07775421284913 0 165.07775421284913 0 49.28411676657959 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5.3158 - 64 + NaN NaN 108830.1 NaN 17771 4034 21802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21808 87.695 NaN 67317 35 0 17652 0.261 -1 VQHSRNMQFHG 11 26 452.8807775663899 NaN 0 452.8701477050781 PEAK HCD FTMS 0 0 0 21802 12138.9033203125 0.4656751160175774 -3 0.081878662109375 6 Oxidation (M) _VQHSRNM(Oxidation (M))QFHG_ ENSG00000101890|ENST00000218006|GUCY2F 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92230.2 NaN 17772 4034 21802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21810 87.7 NaN 434440 35 0 15525 0.327 + 7101 FRKLNTKLM 9 101 575.8429679130824 NaN 0 575.8429565429688 PEAK HCD FTMS 0 0 0 21809 273401.90625 0.15919862408278737 32 -0.872283935546875 1 Unmodified _FRKLNTKLM_ ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant 10.073929032068715 0.24642998803896465 1 D 1 9 9.3361 0 0 0.81206 0 0 105.07832591688573 926.5175579365892 1031.595883853475 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 D 0.81206 - 177 + NaN NaN 150493.9 NaN 17773 4035 21809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21811 87.704 NaN 754570 35 0 122480 0.261 + 5462 FIPKDNQNF 9 93 561.7829613130797 NaN 0 561.7952270507812 PEAK HCD FTMS 0 0 0 21809 15367.8359375 0.38839956513720963 7 -0.19913482666015625 2 Unmodified _FIPKDNQNF_ ENSG00000115641|ENST00000530340|FHL2 18.1463463914782 0.1998403495282098 1 AA{I|L}YD 5 8 16.419 0 0 1.464 0 0 131.1380715804093 454.14365564517817 585.2817272255875 0 0 0 0 0 0 0 0.28872548999643577 0 AA{I|L}YD 1.464 - 601 + NaN NaN 197551.7 NaN 17774 4035 21809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21812 87.708 NaN 462200 35 0 94367 0.261 + 31764 VYLPPEAFTF 10 64 592.3054977094678 1182.5964424857355 2 592.3056030273438 MULTI HCD FTMS 0 0 0 21809 214208.296875 0.895567254895582 2 -0.05576324462890625 3 Unmodified _VYLPPEAFTF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 111.28704002717404 4.959301662581777E-05 1 [YV]{I|L}PPEA{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 10 0 + 91.65 0 0 7.7499 7.7499 95.641 0 0 0 10.231237988471378 10.231237988471378 10.231237988471378 44.53647249642927 0 2.555462187404089 1.6989700043360187 0 0 + + [YV]{I|L}PPEA{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YV]{I|L}PP{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{[ET]|[MV]} 7.7499;3.9839 +;- + 274 NaN NaN 153519.9 NaN 17775 4035 21809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21813 87.711 NaN 193680 35 0 21447 0.261 + -1 KKQKTTKN 8 62 509.3061278987398 1016.5977028642797 2 509.3058776855469 MULTI HCD FTMS 0 0 0 21809 96719.6875 0.3560760773612936 7 -0.19913482666015625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KKQKTTKN_ REV__ENSG00000204165|ENST00000374251|CXorf65 3.944395688203298 0.5361403129012058 1 SM{I|L}E 4 -1 18.443 0 0 1.8142 0 0 131.135428042593 422.23972498111567 553.3751530237087 0 0 0 0 0 0 0 0 0 SM{I|L}E 1.8142 - 98 + NaN NaN 109668.4 NaN 17776 4035 21809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21814 87.714 NaN 84235 35 0 7402.1 0.261 + 5455 FILLGGDLF 9 47 497.78363037109375 NaN 0 497.78363037109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FILLGGDLF_ ENSG00000020922|ENST00000323929|MRE11;ENST00000536144.1_1_11:94216977-94225979:-|nuORF;ENST00000541157.5_1_11:94212014-94225979:-|nuORF;nc|ENSG00000020922|P49959-2|MRE11;nc|ENSG00000020922|P49959-3|MRE11 18.13498045792455 0.19991664011725976 1 {I|L} 1 8 9.6041 0 0 0.96664 0 0 715.3901237287125 162.05600916080314 877.4461328895156 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.96664 + + 12 + NaN NaN 111003.2 NaN 17777 4035 21809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21816 87.719 NaN 353320 35 0 72869 0.327 + 701 APYFPSAC 8 56 428.18889984920827 NaN 0 428.18878173828125 PEAK HCD FTMS 0 0 0 21815 304233.375 0.696277778520788 1 -0.03617095947265625 1 Unmodified _APYFPSAC_ ENST00000471209.1_1_1:155580024-155580464:+|nuORF 0.7936320650641473 0.38822285293237185 1 G 1 8 1.5938 0 0 0.18655 0 0 611.3273103411916 182.9923037164672 794.3196140576588 0 0 0 0 0 0 0 0 0 G 0.18655 - 2 + NaN NaN 132582.3 NaN 17778 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21817 87.724 NaN 347780 35 0 24586 0.261 + -1 SYKYMCMM 8 59 581.2085665436454 1160.4025801540906 2 581.2088012695312 MULTI HCD FTMS 0 0 0 21815 135328.984375 0.6921081868263106 1 -0.03617095947265625 2 Carbamidomethyl (C),3 Oxidation (M) _SYKYM(Oxidation (M))C(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))_ REV__ENST00000444025.1_1_7:23602816-23603164:-|nuORF 0.7936320650641473 0.540814922690045 1 A{M(Oxidation (M))|F} 2 -1 14.068 0 0 1.2123 0 0 924.2831898419937 0 924.2831898419937 0 8.58349385648225 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.2123 - 9 NaN NaN 131924.6 NaN 17779 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21818 87.727 NaN 217100 35 0 14551 0.261 + 14280 LCYARIKSFV 10 67 600.3340342714716 1198.6535156097432 2 600.3345947265625 MULTI HCD FTMS 0 0 0 21815 147582.140625 0.5073840227963667 -13 0.3303375244140625 3 Unmodified _LCYARIKSFV_ REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF 3.5964929083625545 0.45626689593999237 1 Q 1 -1 2.7642 0 0 0.23061 0 0 678.4018199083745 389.17988001041255 1067.581699918787 0 0 0 0 0 0 0 0 0 Q 0.23061 - 25 + NaN NaN 111859.2 NaN 17780 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21819 87.731 NaN 325570 35 0 111870 0.262 + 20985 PLLLHALLL 9 45 501.83914768315145 1001.6637424331029 2 501.8392639160156 MULTI HCD FTMS 0 0 0 21815 129753.125 0.7936575444440865 -1 0.01959228515625 4 Unmodified _PLLLHALLL_ ENSG00000187135|ENST00000335523|VSTM2B 20.871210003555333 0.18003371494288972 1 A{I|L}{I|L}{I|L} 4 5 33.404 0 0 3.3349 0 0 573.3612538068375 0 573.3612538068375 0 17.206225184280793 0 0 0 0.9247425010840047 0 0 0 + A{I|L}{I|L}{I|L} 3.3349 + + 55 NaN NaN 128525.6 NaN 17781 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21820 87.734 NaN 451880 35 0 44331 0.261 + 7714 FYLMQIVEI 9 63 586.3061088283283 1170.5976647234565 2 586.3072509765625 MULTI HCD FTMS 0 0 0 21815 178548.640625 0.5423254049341965 -2 0.04248046875 5 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 47.594388314883695 0.03493607795751234 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}Q{I|L}VE{I|L} 9 2 + 62.92 0 0 5.375 5.375 86.891 0 0 0 3.2568864632742844 35.304672582439196 3.2568864632742844 9.208187539523749 0 1.926935982160881 0 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}Q{I|L}VE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}[AG]{I|L}VE{I|L};[YK][Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VE{I|L};[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QN]|[E{I|L}]|[KN]}YE{I|L};[YK]{NN|[MP]|[D{I|L}]|[EV]}CR{M(Oxidation (M))|F}VK;{NN|[MP]|[D{I|L}]|[EV]}[YK]CR{M(Oxidation (M))|F}VK;[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QN]|[E{I|L}]|[KN]}YNK;[VP][WH]C[VG]{M(Oxidation (M))|F}VK;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}VK;[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}VK 5.375;4.5884;2.2971;1.98;1.5474;1.3131;1.1405;0.52651;0.37003;0.093323 -;-;-;-;-;-;-;-;-;- 684 NaN NaN 151805.3 NaN 17782 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21821 87.737 NaN 110800 35 0 7634.4 0.261 + 11344 IYNGFSSVLQF 11 44 637.824591727212 1273.634630521224 2 637.8243408203125 MULTI HCD FTMS 0 0 0 21815 69435.21875 0.6045155969195899 5 -0.1500701904296875 6 Unmodified _IYNGFSSVLQF_ ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF 74.7717668357584 0.010702153286987788 1 SSV{I|L}Q{M(Oxidation (M))|F} 6 5 75.182 0 0 5.903 0 0 594.280077049025 0 594.280077049025 0 65.71842196392844 0 0 0 2.3494850021680094 0 0.805462187404089 0.4247425010840047 + SSV{I|L}Q{M(Oxidation (M))|F} 5.903 + + 288 NaN NaN 108524.9 NaN 17783 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21822 87.741 NaN 115560 35 0 12614 0.262 + 6078 FPEELSLAF 9 58 526.7688249939155 NaN 0 526.7691040039062 PEAK HCD FTMS 0 0 0 21815 25286.0078125 0.45743651683257397 1 -0.03617095947265625 7 Unmodified _FPEELSLAF_ ENSG00000144559|ENST00000455809|TAMM41;ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41 21.74664581756881 0.17567436591797916 1 A 1 8 14.732 0 0 1.401 0 0 815.4069146589262 162.05576502017814 977.4626796791043 0 0 0 0 0 0.9247425010840047 0 0 0 + A 1.401 + + 26 + NaN NaN 111082.6 NaN 17784 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21823 87.744 NaN 168740 35 0 28010 0.262 + 6886 FPVDCVAM 8 57 441.1968942907368 880.3792356482736 2 441.19781494140625 MULTI HCD FTMS 0 0 0 21815 39189.99609375 0.768992844499039 -2 0.04248046875 8 Unmodified _FPVDCVAM_ nc|ENSG00000258289|Q8WUH1-1|CHURC1 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F}T 2 7 8.0031 0 0 0.90905 0 0 98.05514019484697 531.1873873346311 629.2425275294781 0 0 0 0 0 0.3054621874040891 0 0 0 {M(Oxidation (M))|F}T 0.90905 - 12 + NaN NaN 106257.6 NaN 17785 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21824 87.747 NaN 161300 35 0 30895 0.261 -1 0 49 404.1209281980568 806.2273034629136 2 404.1212463378906 MULTI HCD FTMS 0 0 0 21815 23144.62890625 0.18485298275330508 -10 0.25844573974609375 9 NaN NaN 1 D 1 -1 0.48455 0 0 0.060101 0 0 477.07219589631046 211.09812341861564 688.1703193149261 0 0 0 0 0 0 0 0 0 D 0.060101 - 11 + NaN NaN 117458.9 NaN 17786 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21825 87.751 NaN 164350 35 0 13153 0.261 + 29107 TYGFTSYLF 9 80 549.7599644352804 1097.5053759373607 2 549.761962890625 MULTI HCD FTMS 0 0 0 21815 38625.4921875 0.7266216433491305 -3 0.06533050537109375 10 Unmodified _TYGFTSYLF_ REV__ENSG00000103642|ENST00000261893|LACTB;REV__nc|ENSG00000103642|P83111-2|LACTB 16.942295170755138 0.21397866736869717 1 {[{M(Oxidation (M))|F}C]|[YS]}HP{M(Oxidation (M))|F}{[MG]|[TS]}{I|L}{M(Oxidation (M))|F} 9 -1 {[{M(Oxidation (M))|F}C]|[YS]} + + 30.979 3.7236 1.4889 2.8227 2.8227 59.182 0 0 0 0 20.789266744899493 0 0 0 1.305462187404089 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}HP{M(Oxidation (M))|F}{[MG]|[TS]}{I|L}{M(Oxidation (M))|F} 2.8227 - 219 + NaN NaN 121599.3 NaN 17787 4036 21815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21827 87.756 NaN 93752 35 0 8573.4 0.326 -1 IMHAKWQLL 9 54 578.3208370757744 1154.6271212183487 2 578.321044921875 MULTI HCD FTMS 0 0 0 21826 25195.119140625 0.11116215321881533 32 -0.8598709106445312 1 Oxidation (M) _IM(Oxidation (M))HAKWQLL_ ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000186529|ENST00000221307|CYP4F3;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;nc|ENSG00000186529|Q08477-2|CYP4F3 2.302733041254933 0.33356062215410776 1 T 1 -1 7.9846 0 0 0.69153 0 0 558.8380109661988 491.7255037897094 1050.5635147559083 0 0 0 0 0 0 0 0.25 0 T 0.69153 - 7 + NaN NaN 99462.4 NaN 17788 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21828 87.76 NaN 176060 35 0 18929 0.263 + 19509 NRIKIGAQ 8 50 450.2744669199843 898.5343809067687 2 450.2747802734375 MULTI HCD FTMS 0 0 0 21826 117468.6875 0.05975536499817221 -6 0.16053009033203125 2 Unmodified _NRIKIGAQ_ REV__ENSG00000137877|ENST00000320955|SPTBN5 2.577480529830294 0.5381683276125971 1 P 1 -1 8.8515 0 0 0.98511 0 0 678.4034432620406 120.05006586246327 798.4535091245039 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.98511 - 14 + NaN NaN 120102.8 NaN 17789 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21829 87.763 NaN 116530 35 0 13327 0.261 + 32871 WYFWFLLM 8 51 603.2961182088617 1204.5776834845233 2 603.79833984375 MULTI HCD FTMS 0 0 0 21826 7810.52880859375 0.18072995501761568 -3 0.07865142822265625 3 Unmodified _WYFWFLLM_ ENSG00000154978|ENST00000285279|VOPP1;nc|ENSG00000154978|Q96AW1-2|VOPP1;nc|ENSG00000154978|Q96AW1-3|VOPP1;nc|ENSG00000154978|Q96AW1-4|VOPP1 11.114462752807354 0.5120171699125776 1 [YV]{I|L}[C(Carbamidomethyl (C))R][HN]M{I|L} 9 7 + 53.134 0 0 4.411 4.411 90.239 0 0 0 12.685690803236298 12.685690803236298 12.685690803236298 53.13363730737706 0 1 1.6989700043360187 0 0 [YV]{I|L}[C(Carbamidomethyl (C))R][HN]M{I|L} 4.411 - 107 NaN NaN 113526.2 NaN 17790 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21830 87.767 NaN 258180 35 0 26035 0.261 -1 KPGQNFMCLW 10 55 648.7947271281108 1295.5749013230215 2 649.2977905273438 MULTI HCD FTMS 0 0 0 21826 31392.837890625 0.5960006179102915 -3 0.07865142822265625 4 Carbamidomethyl (C),Oxidation (M) _KPGQNFM(Oxidation (M))C(Carbamidomethyl (C))LW_ ENSG00000189079|ENST00000334344|ARID2;nc|ENSG00000189079|Q68CP9-3|ARID2 7.289230182591677 0.43672065049472153 1 [YT]{I|L}YNWAYG 9 -1 67.546 0 0 5.2136 0 0 0 161.0492166414514 161.0492166414514 45.29721813795433 0 0 0 0 0 1.5228787452803376 0.3494850021680094 1.1989700043360187 [YT]{I|L}YNWAYG 5.2136 - 366 NaN NaN 119094.6 NaN 17791 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21831 87.77 NaN 34436 35 0 4443.7 0.261 + 8655 HFEYFWSTY 9 31 640.2756958007812 NaN 0 640.2756958007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _HFEYFWSTY_ tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1 1.844237919475145 0.28630992268396543 1 K 1 9 2.2185 0 0 0.17352 0 0 492.71245849433745 654.7152804010374 1147.427738895375 0 0 0 0 0 0 0 0 0 K 0.17352 - 2 + NaN NaN 90478.1 NaN 17792 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21832 87.773 NaN 78539 35 0 9060.6 0.264 + 12135 KKKKKKKKKSF 11 42 469.32880077944503 NaN 0 469.32861328125 PEAK HCD FTMS 0 0 0 21826 18872.14453125 0.6921795586587365 6 -0.17620849609375 6 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0.09484139111097674 0.34185110575506755 1 V 1 11 6.9897 0 0 0.74625 0 0 130.15386513135257 704.4006441705686 834.5545093019211 0 0 0 0 0 0 0 0 0 V 0.74625 - 4 + NaN NaN 95278.7 NaN 17793 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21833 87.777 NaN 82324 35 0 21529 0.261 -1 0 31 486.0963242005986 NaN 0 486.0964660644531 PEAK HCD FTMS 0 0 0 21826 10320.9091796875 0.24155352080471984 7 -0.21254730224609375 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87558 NaN 17794 4037 21826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21835 87.782 NaN 6722200 35 0 1351600 0.327 + 12777 KYDVLFALF 9 93 558.3103241922371 1114.606095451274 2 558.3107299804688 MULTI HCD FTMS 0 0 0 21834 5930630.5 1 0 0 1 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 96.11092074494114 0.00436583732602279 1 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 5 + 93.044 0 0 8.3477 8.3477 88.983 0 0 0 3.8798442384120904 13.907854813243986 3.8798442384120904 3.8798442384120904 0 2.6989700043360187 1.3979400086720375 1.2689301784845295 0 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YK]DV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}KV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[MG]|[TS]}V{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YK]DV{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L};[{I|L}A]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[CA]|SS}A{I|L}{M(Oxidation (M))|F} 8.3477;7.9996;7.9626;7.8416;7.1735;7.0999;6.8164;6.7518;6.7149;6.6821 -;+;-;-;-;-;-;-;-;- + 2991 NaN NaN 677906.3 NaN 17795 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21836 87.786 NaN 1069200 35 0 43990 0.261 -1 0 103 611.3560559615195 1220.6975589898389 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21834 1030614.8125 0.717998399226557 -3 0.08193206787109375 2 NaN NaN 1 T{[SA]|[TG]} 3 -1 12.364 0 0 1.0128 0 0 943.548631736525 0 943.548631736525 0 1.9576404378418761 0 0 0 0.3807196863200844 0 0.3494850021680094 0 T{[SA]|[TG]} 1.0128 - 144 NaN NaN 250532 NaN 17796 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21837 87.79 NaN 684750 35 0 20797 0.261 -1 0 102 567.3304148038226 1132.646276674445 2 567.3298950195312 MULTI HCD FTMS 0 0 0 21834 361724.5 0.09351910842537299 52 -1.3296127319335938 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2342 0 0 967.567356241631 0 967.567356241631 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2342 - 887 + NaN NaN 185746.7 NaN 17797 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21838 87.793 NaN 513510 35 0 58742 0.261 + 26705 SYAYILEAF 9 67 538.7686947223544 1075.5228365115088 2 538.76904296875 MULTI HCD FTMS 0 0 0 21834 218466.953125 0.8945518643453595 3 -0.08773040771484375 4 Unmodified _SYAYILEAF_ ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000155465|ENST00000674313|SLC7A7 103.74828524460852 0.00396301343438984 1 {[{M(Oxidation (M))|F}C]|[YS]}AY{I|L}{I|L}EA{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 68.55 0.021824 0.0087264 6.3737 6.3737 63.924 0 0 0 0 61.56041375986099 0 0 0 2.5994850021680094 0 0.3494850021680094 0 + + {[{M(Oxidation (M))|F}C]|[YS]}AY{I|L}{I|L}EA{M(Oxidation (M))|F} 6.3737 + + 225 + NaN NaN 162080 NaN 17798 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21839 87.796 NaN 311690 35 0 67493 0.261 + 15896 LPLLVMGMH 9 49 505.78029039180274 1009.5460278504055 2 505.78033447265625 MULTI HCD FTMS 0 0 0 21834 161316.40625 0.8289711163073555 -2 0.06233978271484375 5 Unmodified _LPLLVMGMH_ REV__ENSG00000134668|ENST00000360482|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;REV__SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant 20.871210003555333 0.18003371494288972 1 {I|L}P{I|L}{M(Oxidation (M))|F}T 5 -1 61.291 0 0 6.0711 0 0 0 435.18576990299067 435.18576990299067 54.301308643370604 0 0 0 0 0.7742275032520141 1.6989700043360187 0.3807196863200844 0 {I|L}P{I|L}{M(Oxidation (M))|F}T 6.0711 - 48 + NaN NaN 128411.7 NaN 17799 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21840 87.8 NaN 225170 35 0 23338 0.261 + 29931 VFEEPPPFFP 10 63 603.2961182088617 1204.5776834845233 2 602.2918090820312 MULTI HCD FTMS 0 0 0 21834 29211.4375 1 0 0 6 Unmodified _VFEEPPPFFP_ REV__ENSG00000214753|ENST00000301785|HNRNPUL2;REV__HNRNPUL2|p.E419K|1|0.37|ENSG00000214753|chr11:62722221-62722221|C/T|missense_variant 7.289230182591677 0.43672065049472153 1 MP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 12.703 0 0 1.0546 0 0 698.3167714745608 0 698.3167714745608 0 6.505149978319905 0 0 0 0 0 0 0 MP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.0546 - 169 + NaN NaN 116019.2 NaN 17800 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21841 87.803 NaN 65937 35 0 15370 0.263 + -1 LRFCSEVETLC 11 31 452.8807775663899 NaN 0 452.8809509277344 PEAK HCD FTMS 0 0 0 21834 21669.552734375 0.831291857044736 1 -0.029083251953125 7 Carbamidomethyl (C) _LRFCSEVETLC(Carbamidomethyl (C))_ REV__ENSG00000163945|ENST00000389851|UVSSA 0.40826533853263924 0.34096201227758716 1 R 1 -1 4.6041 0 0 0.50944 0 0 383.41388559977355 361.19968591861567 744.6135715183892 0 0 0 0 0 0 0 0 0 R 0.50944 + + 1 + NaN NaN 83809.2 NaN 17801 4038 21834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21843 87.81 NaN 1761400 35 0 89936 0.327 -1 0 117 589.3431010203685 1176.671649107537 2 589.3433227539062 MULTI HCD FTMS 0 0 0 21842 2302515.75 0.5031422411080461 -10 0.2682342529296875 1 NaN NaN 1 {M(Oxidation (M))|F}N 2 -1 12.307 0 0 1.0459 0 0 897.5198841779312 0 897.5198841779312 0 0.6432657088430478 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 1.0459 - 263 NaN NaN 350357 NaN 17802 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21844 87.815 NaN 1079100 35 0 50197 0.261 -1 0 128 597.8562607199011 1193.6979685066021 2 597.8565063476562 MULTI HCD FTMS 0 0 0 21842 727561.3125 0.3800445933646802 -16 0.42176055908203125 2 NaN NaN 1 W 1 -1 13.979 0 0 1.1711 0 0 989.6080770044522 0 989.6080770044522 0 4.018637558036673 0 0 0 0 0 0 0 W 1.1711 - 956 + NaN NaN 252179.6 NaN 17803 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21845 87.818 NaN 1332000 35 0 346270 0.263 + 10543 IPIFTDVAL 9 55 494.7893444382525 NaN 0 494.7894592285156 PEAK HCD FTMS 0 0 0 21842 527640.9375 0.5087669553730484 -1 0.029083251953125 3 Unmodified _IPIFTDVAL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 74.42276476219924 0.00481387315266945 1 AVDT{M(Oxidation (M))|F} 5 8 42.128 0 0 4.2658 0 0 131.09483454329137 320.1976717584594 451.2925063017508 0 0 0 0 0 1.947621246364342 0 0.8494850021680094 0 AVDT{M(Oxidation (M))|F} 4.2658 - 72 + NaN NaN 282333.9 NaN 17804 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21846 87.822 NaN 1943000 35 0 346930 0.261 + 27244 SYPAFWTSF 9 90 553.2531882149468 1104.4918234966935 2 553.253662109375 MULTI HCD FTMS 0 0 0 21842 623020.125 0.42759851649383973 -1 0.029083251953125 4 Unmodified _SYPAFWTSF_ ENST00000299505.6_1_19:34791118-34791184:+|nuORF 81.61307344734483 0.005330412723537057 1 [PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F} 9 3 + 47.872 0 0 4.3343 4.3343 83.105 0 0 0 8.569454872308064 14.851905544230348 8.569454872308064 6.110469015915783 0 1.3182503180159344 0 1.086696871556164 0 [PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[PA]{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TW{NN|[MP]|[D{I|L}]|[EV]}T[HV];{[WT]|[RM]}S{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}T[HV];{[MG]|[TS]}{M(Oxidation (M))|F}W{NN|[MP]|[D{I|L}]|[EV]}T[HV];{[MG]|[TS]}W{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}T[HV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[ET]|[MV]}AA{M(Oxidation (M))|F}[MT];[{I|L}A]S[HM]{M(Oxidation (M))|F}[PS]{[ES]|[DT]|[{I|L}C]};{[MG]|[TS]}{[ET]|[MV]}{M(Oxidation (M))|F}[RD]{[{M(Oxidation (M))|F}C]|[YS]} 4.3343;3.7811;2.6799;1.8279;1.5382;1.4261;1.2437;1.2142;1.0748;1.0065 -;+;-;-;-;-;-;-;-;- + 2736 + NaN NaN 386023.8 NaN 17805 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21847 87.825 NaN 908730 35 0 81203 0.261 + 32193 VYTDWIMAL 9 112 564.2754290660597 1126.5363051989193 2 564.2753295898438 MULTI HCD FTMS 0 0 0 21842 118952.140625 0.39224041769802587 8 -0.242401123046875 5 Oxidation (M) _VYTDWIM(Oxidation (M))AL_ ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant 85.35673624503755 0.00464763827098139 1 {[{M(Oxidation (M))|F}C]|[YS]}VEW{I|L}{M(Oxidation (M))|F}A{I|L} 9 3 + 72.467 0 0 6.4327 6.4327 85.06 0 0 0 8.384767769392738 43.66226109317664 8.384767769392738 2.742275032520155 0 1.2059771852360797 0 1.48239816956497 0 {[{M(Oxidation (M))|F}C]|[YS]}VEW{I|L}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DW{I|L}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}WE{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}VWE{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VE{[DA]|[EG]}{I|L}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{[DA]|[EG]}{I|L}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VEWVTM{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}{[DA]|[EG]}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VEWS{I|L}M{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V{[DA]|[EG]}E{M(Oxidation (M))|F}A{I|L} 6.4327;6.1893;6.1119;5.8685;5.6153;5.3719;5.3281;5.2945;5.1254;5.0511 -;-;-;-;-;-;-;-;-;- 6021 NaN NaN 216740.6 NaN 17806 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21848 87.828 NaN 359480 35 0 159930 0.261 -1 0 61 606.3694677211702 1210.7243825091402 2 606.3699951171875 MULTI HCD FTMS 0 0 0 21842 112583.09375 0.15062758234940896 -1 0.029083251953125 6 NaN NaN 1 A 1 -1 3.9794 0 0 0.32868 0 0 78.07710023514126 1058.5950411432252 1136.6721413783664 0 0 0 0 0 0 0 0 0 A 0.32868 - 11 + NaN NaN 141612.2 NaN 17807 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21849 87.835 NaN 520890 35 0 51969 0.263 -1 0 84 458.78776439326293 915.5609758533259 2 458.78790283203125 MULTI HCD FTMS 0 0 0 21842 177208.890625 0.13597833788442096 -4 0.11101531982421875 7 NaN NaN 1 P 1 -1 8.9794 0 0 0.98075 0 0 695.4300534673869 120.05035577945546 815.4804092468423 0 0 0 0 0 0.5 0 0 0 P 0.98075 - 30 + NaN NaN 176259.1 NaN 17808 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21850 87.838 NaN 201420 35 0 13677 0.261 + 16350 LRSRRAPSF 9 85 545.3168782979817 1088.6192036627633 2 545.31689453125 MULTI HCD FTMS 0 0 0 21842 88662.515625 0.2888343826466477 6 -0.18663787841796875 8 Unmodified _LRSRRAPSF_ ENSG00000101892|ENST00000218008|ATP1B4;nc|ENSG00000101892|Q9UN42-2|ATP1B4 4.75600775471527 0.31496297302216103 1 KS{M(Oxidation (M))|F} 3 7 21.925 0 0 2.014 0 0 708.4138031274102 0 708.4138031274102 0 14.160502837155455 0 0 0 0 0 0.3252574989159953 0 KS{M(Oxidation (M))|F} 2.014 - 171 + NaN NaN 117826.5 NaN 17809 4039 21842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21852 87.843 NaN 3853200 35 0 650770 0.327 + -1 NPMNAGGF 8 81 412.1751535033214 822.3357540734428 2 412.17578125 MULTI HCD FTMS 0 0 0 21851 7033356.5 0.967517051744063 2 -0.0557098388671875 1 Oxidation (M) _NPM(Oxidation (M))NAGGF_ REV__ENSG00000122359|ENST00000422982|ANXA11;REV__nc|ENSG00000122359|P50995-2|ANXA11 2.577480529830294 0.5381683276125971 1 {I|L}C(Carbamidomethyl (C)) 2 -1 15.261 0 0 1.8558 0 0 155.09378862190619 391.09906946353755 546.1928580854437 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L}C(Carbamidomethyl (C)) 1.8558 - 28 + NaN NaN 672581.2 NaN 17810 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21853 87.848 NaN 572850 35 0 52602 0.261 -1 0 101 619.8695022068749 1237.7244514805498 2 619.8695068359375 MULTI HCD FTMS 0 0 0 21851 616188.0625 0.9287930383638561 -3 0.0876617431640625 2 NaN NaN 1 D 1 -1 8.4556 0 0 0.68316 0 0 105.07858321139618 1014.5730420283387 1119.6516252397348 0 0 0 0 0 0.3054621874040891 0 0.3807196863200844 0 D 0.68316 - 360 + NaN NaN 179648.1 NaN 17811 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21854 87.851 NaN 310400 35 0 8658.8 0.261 + 20757 PGKKVEPVPVT 11 94 575.8429679130824 NaN 0 575.84326171875 PEAK HCD FTMS 0 0 0 21851 282706.40625 0.1646165219244499 37 -0.9406967163085938 3 Unmodified _PGKKVEPVPVT_ ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1 10.799506525563784 0.3114850535502259 1 W 1 11 6.9897 0 0 0.60797 0 0 312.280753015479 648.3048606575719 960.5856136730508 0 0 0 0 0 0 0 0 0 W 0.60797 - 166 + NaN NaN 134348.6 NaN 17812 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21855 87.855 NaN 675720 35 0 47440 0.261 + 5586 FLPPYTFQI 9 95 563.3019865727105 1124.5894202122208 2 563.3028564453125 MULTI HCD FTMS 0 0 0 21851 237983.109375 0.7452577457602139 -2 0.061492919921875 4 Unmodified _FLPPYTFQI_ ENSG00000023608|ENST00000216294|SNAPC1 118.89474601620944 0.0014903111061077812 1 EPPYTQ{I|L}{M(Oxidation (M))|F} 8 4 70.262 0 0 6.2478 0 0 131.09055005021702 0 131.09055005021702 0 45.13632853717044 0 0 0 2.4876954943324545 0 0.7302046884880937 0.9947026752325154 EPPYTQ{I|L}{M(Oxidation (M))|F} 6.2478 - 1861 + NaN NaN 191304.3 NaN 17813 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21856 87.858 NaN 281710 35 0 26986 0.261 + -1 CWECRSTC 8 57 579.7085851085913 1157.4026172839824 2 579.7084350585938 MULTI HCD FTMS 0 0 0 21851 216869.03125 1 0 0 5 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))WEC(Carbamidomethyl (C))RSTC(Carbamidomethyl (C))_ REV__ENSG00000173988|ENST00000595396|LRRC63 0.6903765706972694 0.5409681170271811 1 E 1 -1 3.9794 0 0 0.34382 0 0 136.0360498654415 889.2833609200657 1025.3194107855072 0 0 0 0 0 0 0 0 0 E 0.34382 + + 12 + NaN NaN 136780.6 NaN 17814 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21857 87.861 NaN 560920 35 0 91792 0.261 + 5905 FPDLFSEQL 9 74 548.2716015127073 1094.5286500922145 2 548.2721557617188 MULTI HCD FTMS 0 0 0 21851 190118.84375 0.2366694457943287 -3 0.0876617431640625 6 Unmodified _FPDLFSEQL_ ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 103.35351024395868 0.004027461563756449 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SEQ{I|L} 9 3 + 76.819 0 0 7.0184 7.0184 89.809 0 0 0 5.976774389162102 51.37349768879069 5.976774389162102 9.208187539523749 0 1.805462187404089 0 1.4361818737241734 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SE[AG]{I|L};[VP]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}TEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L};[VP]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}TE[AG]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}KYY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}[{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[KC]{I|L}YY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{[ES]|[DT]|[{I|L}C]}H[HN] 7.0184;6.1771;4.4798;3.9919;3.6385;3.1506;2.0669;1.8574;1.2676;1.1368 -;-;-;-;-;-;-;-;-;- 615 NaN NaN 164986.1 NaN 17815 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21858 87.865 NaN 125280 35 0 10526 0.261 + -1 KKQLILLYSC 10 59 633.3690189616517 1264.7234849901033 2 633.3690795898438 MULTI HCD FTMS 0 0 0 21851 31775.755859375 0.29590286640352853 -2 0.061492919921875 7 Carbamidomethyl (C) _KKQLILLYSC(Carbamidomethyl (C))_ REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF 1.4819007175156935 0.4674597685733628 1 {I|L} 1 -1 5.4846 0 0 0.43366 0 0 767.3902158024065 381.2248934381469 1148.6151092405535 0 0 0 0 0 0 0 0 0 {I|L} 0.43366 + + 10 + NaN NaN 99002.4 NaN 17816 4040 21851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21860 87.869 NaN 1235700 35 0 315890 0.327 + 10544 IPIFTDVAL 9 55 494.7893444382525 NaN 0 494.78936767578125 PEAK HCD FTMS 0 0 0 21859 513010.375 0.4946597354636377 1 -0.02947235107421875 1 Unmodified _IPIFTDVAL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 85.35673624503755 0.0012370366288973111 1 AVDT{M(Oxidation (M))|F} 5 8 47.294 0 0 4.789 0 0 131.09480900041962 320.19748865299067 451.2922976534103 0 0 0 0 0 1.9291746928241125 0 0.8494850021680094 0 AVDT{M(Oxidation (M))|F} 4.789 - 88 + NaN NaN 269924.6 NaN 17817 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21861 87.874 NaN 344060 35 0 62483 0.261 + 1695 CGFVGEPF 8 56 428.18889984920827 NaN 0 428.1890563964844 PEAK HCD FTMS 0 0 0 21859 167414.765625 0.3831505373167996 6 -0.18375396728515625 2 Unmodified _CGFVGEPF_ REV__ENST00000526770.5_1_11:67378371-67379926:+|nuORF 2.8892196856762586 0.38822285293237185 1 H 1 -1 4.6041 0 0 0.53889 0 0 114.01011063416031 600.2701510065061 714.2802616406665 0 0 0 0 0 0 0 0 0 H 0.53889 - 4 + NaN NaN 140870.5 NaN 17818 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21862 87.877 NaN 924740 35 0 84452 0.261 + 34930 YSLHDYAQM 9 112 564.2443499604037 1126.4741469876074 2 564.2442626953125 MULTI HCD FTMS 0 0 0 21859 164497.078125 0.5383010450936373 1 -0.02947235107421875 3 Unmodified _YSLHDYAQM_ REV__ENSG00000137766|ENST00000260323|UNC13C 13.90604991867851 0.24021115267848145 1 MA{M(Oxidation (M))|F}EW{I|L}V 7 -1 49.769 0 0 4.4181 0 0 0 247.07219873599846 247.07219873599846 20.013487579716767 0 0 0 0 0.5 0 0.8807196863200843 0 MA{M(Oxidation (M))|F}EW{I|L}V 4.4181 - 4536 + NaN NaN 241844.7 NaN 17819 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21863 87.881 NaN 444080 35 0 49076 0.261 -1 MVKLNLVRW 9 94 608.8474741125639 NaN 0 608.8474731445312 PEAK HCD FTMS 0 0 0 21859 77940.1484375 0.277573404207487 1 -0.02947235107421875 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))VKLNLVRW_ ENST00000405938.5_1_22:26907091-26908398:-|nuORF;ENST00000407690.5_1_22:26906586-26908398:-|nuORF;ENST00000420242.5_1_22:26906648-26908398:-|nuORF;ENST00000455080.5_1_22:26907091-26908398:-|nuORF;ENST00000464449.1_1_22:26908063-26908398:-|nuORF;ENST00000472918.5_1_22:26902745-26908398:-|nuORF 2.302733041254933 0.2840881193086663 1 YP 2 -1 6.4537 0 0 0.53087 0 0 475.30022058665264 477.2336519830688 952.5338725697214 0 0 0 0 0 0 0 0 0 YP 0.53087 - 45 + NaN NaN 141842.1 NaN 17820 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21864 87.884 NaN 185880 35 0 52376 0.263 -1 0 57 467.30103153681665 932.5875101404333 2 467.3011169433594 MULTI HCD FTMS 0 0 0 21859 87936.609375 0.3330748840173925 1 -0.02947235107421875 5 NaN NaN 1 P 1 -1 3.9794 0 0 0.42671 0 0 527.347868882424 305.16034876041255 832.5082176428366 0 0 0 0 0 0 0 0 0 P 0.42671 - 11 + NaN NaN 107268.7 NaN 17821 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21865 87.887 NaN 296920 35 0 18135 0.261 + 14281 LCYARIKSFV 10 67 600.3340342714716 1198.6535156097432 2 600.33447265625 MULTI HCD FTMS 0 0 0 21859 157042.609375 0.5399088979037902 -8 0.21540069580078125 6 Unmodified _LCYARIKSFV_ REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF 3.5964929083625545 0.45626689593999237 1 Q 1 -1 5.4846 0 0 0.45756 0 0 546.3242961338347 521.2587984674436 1067.5830946012784 0 0 0 0 0 0 0 0 0 Q 0.45756 - 77 + NaN NaN 128548.3 NaN 17822 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21866 87.891 NaN 175260 35 0 40079 0.261 -1 MILAHGKLRL 10 45 584.3565847607532 NaN 0 584.3567504882812 PEAK HCD FTMS 0 0 0 21859 12443.0244140625 0.028205321585625356 32 -0.8218154907226562 7 Oxidation (M) _M(Oxidation (M))ILAHGKLRL_ ENST00000547851.1_1_12:47600278-47609950:-|nuORF;ENST00000550426.5_1_12:47599871-47609950:-|nuORF 1.844237919475145 0.33860587697544825 1 {I|L}Y 2 -1 9.464 0 0 0.81117 0 0 131.18094745262107 756.3466280572874 887.5275755099085 0 0 0 0 0 0 0 0 0 {I|L}Y 0.81117 - 13 + NaN NaN 105263.9 NaN 17823 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21867 87.894 NaN 395310 35 0 40309 0.261 + 7715 FYLMQIVEI 9 62 586.3061088283283 1170.5976647234565 2 586.305908203125 MULTI HCD FTMS 0 0 0 21859 100420.59375 0.3050185035213072 3 -0.0986480712890625 8 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 60.07390631473393 0.0174780869009295 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}Q{I|L}VE{I|L} 9 2 + 61.991 0 0 5.2957 5.2957 86.747 0 0 0 2.922152515121219 30.052813245873082 2.922152515121219 9.208187539523749 0 1.9802046884880937 0 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}Q{I|L}VE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}[AG]{I|L}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VQN;{[QN]|[E{I|L}]|[KN]}V[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VE{I|L};{[QN]|[E{I|L}]|[KN]}V[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VQN;{NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}N;{[QN]|[E{I|L}]|[KN]}V[EP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F}QRRAA;[VP][WH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}N 5.2957;4.509;2.9427;2.6855;2.4704;2.2132;2.0655;1.5932;1.404;1.2728 -;-;-;-;-;-;-;-;-;- 471 NaN NaN 133189.1 NaN 17824 4041 21859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21869 87.899 NaN 1388400 35 0 154010 0.327 + 30478 VLTTPRRG 8 80 450.2744669199843 898.5343809067687 2 450.2746276855469 MULTI HCD FTMS 0 0 0 21868 1724881.25 0.8774330493158317 -1 0.02947235107421875 1 Unmodified _VLTTPRRG_ SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant 5.230669730166228 0.5342319408533849 1 P 1 7 9.6041 0 0 1.0689 0 0 678.4033974856734 120.05052362613515 798.4539211118085 0 0 0 0 0 0.5 0 0 0 + P 1.0689 + + 9 + NaN NaN 294905.1 NaN 17825 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21870 87.903 NaN 294510 35 0 65785 0.261 + 31765 VYLPPEAFTF 10 58 592.3054977094678 1182.5964424857355 2 592.3053588867188 MULTI HCD FTMS 0 0 0 21868 120500.5703125 0.5037917136846088 9 -0.25667572021484375 2 Unmodified _VYLPPEAFTF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 71.92227651296345 0.015307609975375192 1 [YV]{I|L}P[EP]A{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 10 0 + 77.708 0 0 6.571 6.571 92.944 0 0 0 24.25968732272281 67.25054710168187 24.25968732272281 31.052659518797938 0 2.2302046884880937 1.6989700043360187 0 0 + + [YV]{I|L}P[EP]A{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YV]{I|L}[WH][YR]{M(Oxidation (M))|F} 6.571;3.9452 +;- + 146 NaN NaN 128760.7 NaN 17826 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21871 87.907 NaN 245520 35 0 15439 0.261 + -1 WYAYFEPW 8 76 602.261421524503 1202.508290115806 2 603.26708984375 MULTI HCD FTMS 0 0 0 21868 122276.53125 0.8497452186142429 -1 0.02947235107421875 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WYAYFEPW_ REV__ENST00000380135.7_1_12:51451801-51451852:+|nuORF;REV__ENST00000546814.1_1_12:51450080-51451852:+|nuORF;REV__ENST00000547555.5_1_12:51442173-51451852:+|nuORF;REV__ENST00000551931.5_1_12:51449776-51451852:+|nuORF;REV__nc|ENSG00000050426|Q6P1Q0-3|LETMD1 11.114462752807354 0.5120171699125776 1 [YN]{[QG]|[NA]}Y{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[PS] 10 -1 + 30.417 0 0 2.5295 2.5295 81.874 0 0 0 6.812412373755873 6.812412373755873 6.812412373755873 6.812412373755873 0 0.5 1.3010299956639813 0 0.3252574989159953 [YN]{[QG]|[NA]}Y{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[PS];{[DS]|[MA]|[CV]|TT}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}YEEW;{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[PS];{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[PG]EE;[YN]{[QG]|[NA]}Y{M(Oxidation (M))|F}[PG]G[NS];{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[PG]G[NS];[YN]{[QG]|[NA]}YV{[DS]|[MA]|[CV]|TT}EE;{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F}YV{[DS]|[MA]|[CV]|TT}EE;{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{[NV]|[RG]}[QA];[YN]{[QG]|[NA]}YV{[DS]|[MA]|[CV]|TT}G[NS] 2.5295;1.963;1.9439;1.8389;1.8289;1.8045;1.613;1.5886;1.5886;1.5786 -;-;-;-;-;-;-;-;-;- 871 NaN NaN 126127 NaN 17827 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21872 87.91 NaN 325970 35 0 49157 0.261 -1 MLRIPQPLIM 10 71 622.3474647307514 1242.6803765283028 2 622.3477172851562 MULTI HCD FTMS 0 0 0 21868 89664.625 0.7452405582081041 2 -0.06917572021484375 4 2 Oxidation (M) _M(Oxidation (M))LRIPQPLIM(Oxidation (M))_ NALCN|p.R146Q|1|0.06|ENSG00000102452|chr13:101376995-101376995|C/T|missense_variant 4.3292370932331545 0.45238836448149167 1 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 35.072 0 0 2.8223 0 0 0 162.15049549887058 162.15049549887058 19.397737521010832 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 2.8223 - 159 NaN NaN 137830.9 NaN 17828 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21873 87.914 NaN 297080 35 0 26583 0.261 -1 FYLMQIVEI 9 51 586.3061088283283 1170.5976647234565 2 586.30517578125 MULTI HCD FTMS 0 0 0 21868 74428.3671875 0.2260694577805722 4 -0.11476898193359375 5 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 34.40172386719151 0.0910440009062557 1 SGM{I|L}VE{I|L} 7 -1 49.06 0 0 4.1911 0 0 423.2163258283219 0 423.2163258283219 0 33.624729567603 0 0 0 1.3494850021680094 0 0.3494850021680094 0 SGM{I|L}VE{I|L} 4.1911 - 255 NaN NaN 145066.9 NaN 17829 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21874 87.917 NaN 114440 35 0 10458 0.261 + 14855 LKGEPPERRIA 11 57 633.3690189616517 1264.7234849901033 2 633.3688354492188 MULTI HCD FTMS 0 0 0 21868 107385.765625 1 0 0 6 Unmodified _LKGEPPERRIA_ REV__ENST00000415031.1_1_1:51984033-52026593:+|nuORF 1.214830529360525 0.41359283248740725 1 P 1 -1 3.0989 0 0 0.24503 0 0 553.3436764957659 611.3168429010374 1164.6605193968032 0 0 0 0 0 0 0 0 0 P 0.24503 + + 10 + NaN NaN 106227.1 NaN 17830 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21875 87.92 NaN 367700 35 0 35855 0.262 -1 KFFCLGILL 9 81 555.8240350232346 1109.6335171132691 2 555.8245239257812 MULTI HCD FTMS 0 0 0 21868 121723.28125 0.9294447084799009 2 -0.06917572021484375 7 Carbamidomethyl (C) _KFFC(Carbamidomethyl (C))LGILL_ SVA_A_dup46|chr1:153582339-153583909:+|2.031148181261908|0.1339009560295861|3.92|521.0|39|3|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|36|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|50|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|12|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|33|3|sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|13|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|39|3|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|30|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|35|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|45|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|28|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|8|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|33|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|25|2|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|44|3|sense;SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|11|1|sense;SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|13|1|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|30|2|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|30|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|40|3|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|10|1|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|15|1|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|28|2|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|42|3|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|38|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|10|1|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|31|2|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|13|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|17|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|14|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|30|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|27|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|31|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|13|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|50|3|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|12|1|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|14|1|sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|25|2|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|28|2|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|43|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|31|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|45|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|14|1|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|33|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|42|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|26|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|33|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|31|2|sense 11.640296217721598 0.25978676193971967 1 ET{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 6 -1 40.271 0 0 3.6292 0 0 367.3029029548691 0 367.3029029548691 0 11.062828410967498 0 0 0 0 0 1.2302046884880937 0 ET{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 3.6292 - 1121 + NaN NaN 131613.7 NaN 17831 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21876 87.924 NaN 95959 35 0 5601.8 0.261 -1 0 47 509.3061278987398 1016.5977028642797 2 509.30615234375 MULTI HCD FTMS 0 0 0 21868 29695.470703125 0.10932465764393588 14 -0.379608154296875 8 NaN NaN 1 [Y{I|L}]V[HQ]V 6 -1 20.123 0 0 1.9795 0 0 0 274.1879313652527 274.1879313652527 14.181212380090214 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]V[HQ]V 1.9795 - 34 NaN NaN 111183.4 NaN 17832 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21877 87.927 NaN 184560 35 0 22877 0.261 + 33345 YGCNAKWL 8 61 477.7283984851695 953.4422440371391 2 477.729248046875 MULTI HCD FTMS 0 0 0 21868 80787.65625 0.4865769064632428 -1 0.02947235107421875 9 Unmodified _YGCNAKWL_ REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 5.4846 0 0 0.57524 0 0 59.04769834542703 778.2990222574259 837.346720602853 0 0 0 0 0 0 0 0 0 {I|L} 0.57524 + + 8 + NaN NaN 113317.3 NaN 17833 4042 21868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21879 87.932 NaN 2213500 35 0 458610 0.327 + 12778 KYDVLFALF 9 85 558.3103241922371 1114.606095451274 2 558.3106689453125 MULTI HCD FTMS 0 0 0 21878 2458140.75 0.4144821954427948 5 -0.13777923583984375 1 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 57.72198328787511 0.020768266150574023 1 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 5 + 79.04 0 0 7.0913 7.0913 86.783 0 0 0 6.015515467194845 12.781512503836439 6.015515467194845 3.6336433413046763 0 2.4247425010840047 1.3010299956639813 0.23965182871044374 0 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YK]DV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[CA]|SS}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L} 7.0913;6.7653;6.5516;6.0061;5.9445;5.9445;5.9086;5.7765;5.6185;5.6185 -;-;+;-;-;-;-;-;-;- + 1843 NaN NaN 434771.5 NaN 17834 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21880 87.936 NaN 1047400 35 0 40766 0.261 -1 0 100 611.3560559615195 1220.6975589898389 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21878 1389181.625 0.9678011327679682 2 -0.06568145751953125 2 NaN NaN 1 T{[SA]|[TG]} 3 -1 11.497 0 0 0.94182 0 0 943.5475941388687 0 943.5475941388687 0 3.397803053245953 0 0 0 0.3807196863200844 0 0.3252574989159953 0 T{[SA]|[TG]} 0.94182 - 93 NaN NaN 257220.9 NaN 17835 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21881 87.94 NaN 578230 35 0 15790 0.261 -1 RQVHRVSLP 9 121 567.3304148038226 1132.646276674445 2 567.3301391601562 MULTI HCD FTMS 0 0 0 21878 532578 0.1376910320616057 57 -1.4283218383789062 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RQVHRVSLP_ chr2:20205424-20219262|157|56.06|0.8|6.13|-|0|SDC1,None|1 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2342 0 0 967.5674477943654 0 967.5674477943654 0 0.4845500650402812 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2342 - 854 + NaN NaN 180086 NaN 17836 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21882 87.943 NaN 574890 35 0 57060 0.261 + 20282 NYMKWWRF 8 92 615.799726001648 NaN 0 615.8001098632812 PEAK HCD FTMS 0 0 0 21878 138534.421875 0.7627971870583485 -4 0.1209564208984375 4 Unmodified _NYMKWWRF_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-2|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37-5|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 12.531546534597751 0.38822285293237185 1 DN{I|L}Q 4 -1 15.433 0 0 1.2551 0 0 165.09727521483234 591.2573642766823 756.3546394915147 0 0 0 0 0 0 0 0 0 DN{I|L}Q 1.2551 - 550 + NaN NaN 169211.2 NaN 17837 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21883 87.947 NaN 206690 35 0 20811 0.261 + 13539 KYPENFFLL 9 65 585.8135793710412 NaN 0 585.8138427734375 PEAK HCD FTMS 0 0 0 21878 135787.375 0.6717434992423709 36 -0.9050521850585938 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.1538978316896649 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 19.62 0 0 1.6775 0 0 131.09897955223556 628.2758883111936 759.3748678634292 0 0 0 0 0 1.120371515030528 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6775 - 150 + NaN NaN 124361.8 NaN 17838 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21884 87.95 NaN 419760 35 0 97426 0.262 + 25623 SGLGYCFSF 9 56 490.71377386390293 979.4129947946059 2 490.71356201171875 MULTI HCD FTMS 0 0 0 21878 233544.140625 1 0 0 6 Unmodified _SGLGYCFSF_ ENSG00000108932|ENST00000580666|SLC16A6 4.3292370932331545 0.3181982124262546 1 S{M(Oxidation (M))|F} 2 7 16.198 0 0 1.6538 0 0 727.3023360805419 0 727.3023360805419 0 1.1535656654828585 0 0 0 0 0 0 0 + S{M(Oxidation (M))|F} 1.6538 + + 20 + NaN NaN 157248.5 NaN 17839 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21885 87.953 NaN 124310 35 0 14529 0.261 + 29150 TYINPFVSF 9 46 544.2765448665174 1086.5385367998347 2 544.2764892578125 MULTI HCD FTMS 0 0 0 21878 59602.5625 0.09565374911770332 -5 0.1500396728515625 7 Unmodified _TYINPFVSF_ ENSG00000113615|ENST00000398844|SEC24A;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant 28.494509381512117 0.11816142465008336 1 QVV{M(Oxidation (M))|F} 4 7 44.923 0 0 4.1345 0 0 595.2635682737134 0 595.2635682737134 0 26.60464748242205 0 0 0 1.75 0 0 0 QVV{M(Oxidation (M))|F} 4.1345 - 126 + NaN NaN 99627 NaN 17840 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21886 87.957 NaN 124750 35 0 16019 0.261 + 1713 CHGLMMLLL 9 40 515.767133058623 1029.519713184046 2 515.7671508789062 MULTI HCD FTMS 0 0 0 21878 83988.2265625 0.8694482613045331 -4 0.1209564208984375 8 Unmodified _CHGLMMLLL_ ENST00000395246.5_1_5:130728068-130728134:+|nuORF 14.581692164780916 0.23437375358055648 1 {I|L}{I|L} 2 7 24.776 0 0 2.4066 0 0 785.3429592215056 0 785.3429592215056 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 + {I|L}{I|L} 2.4066 + + 2 NaN NaN 99471.9 NaN 17841 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21887 87.96 NaN 65932 35 0 6994.9 0.261 + -1 HWIERMQKM 9 44 637.8114679397393 1273.6083829462784 2 637.8099365234375 MULTI HCD FTMS 0 0 0 21878 62562.2890625 1 0 0 9 Oxidation (M) _HWIERMQKM(Oxidation (M))_ REV__ENST00000522490.5_3_6:109468086-109468125:+|nuORF 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F} 1 -1 1.5938 0 0 0.12514 0 0 746.8720681042847 376.67588220767817 1123.547950311963 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.12514 + + 4 + NaN NaN 90215 NaN 17842 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21888 87.963 NaN 179070 35 0 33532 0.262 + 15614 LPEDIHSTF 9 57 529.7624758682327 1057.5103988032654 2 530.2640991210938 MULTI HCD FTMS 0 0 0 21878 62276.5234375 1 0 0 10 Unmodified _LPEDIHSTF_ ENSG00000183117|ENST00000635120|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000183117|Q96PZ7-2|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1 32.30548876998284 0.10066689432505688 1 {I|L}PED[QP]NV{M(Oxidation (M))|F} 9 4 + 70.925 0 0 6.7068 6.7068 89.239 0 0 0 66.94591861666268 14.09256854528806 14.09256854528806 9.208187539523749 0 1.7614393726401687 1.3010299956639813 0 0 {I|L}PED[QP]NV{M(Oxidation (M))|F};{I|L}PED[QP]GGV{M(Oxidation (M))|F} 6.7068;5.8361 -;- 97 + NaN NaN 126048.8 NaN 17843 4043 21878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21890 87.968 NaN 2390100 35 0 118200 0.327 -1 0 121 589.3431010203685 1176.671649107537 2 589.3434448242188 MULTI HCD FTMS 0 0 0 21889 691006.125 0.15099760787820304 -5 0.15729522705078125 1 NaN NaN 1 {M(Oxidation (M))|F}N 2 -1 12.307 0 0 1.0459 0 0 897.5241566388687 0 897.5241566388687 0 3.015384402724594 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 1.0459 - 288 NaN NaN 446834.1 NaN 17844 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21891 87.972 NaN 1682400 35 0 65145 0.261 -1 0 129 597.8562607199011 1193.6979685066021 2 597.8563232421875 MULTI HCD FTMS 0 0 0 21889 66113.8828125 0.03453485400824784 -11 0.31404876708984375 2 NaN NaN 1 W 1 -1 14.604 0 0 1.2234 0 0 989.6083669214444 0 989.6083669214444 0 4.203103093438969 0 0 0 0 0 0 0 W 1.2234 - 942 + NaN NaN 345072.7 NaN 17845 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21892 87.976 NaN 795420 35 0 150490 0.261 + 27245 SYPAFWTSF 9 68 553.2531882149468 1104.4918234966935 2 553.253173828125 MULTI HCD FTMS 0 0 0 21889 31175.35546875 0.02139663746753865 4 -0.1014404296875 3 Unmodified _SYPAFWTSF_ ENST00000299505.6_1_19:34791118-34791184:+|nuORF 88.90359156742426 0.00455469703666567 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PS]{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F} 9 2 + 51.053 0 0 4.6223 4.6223 82.577 0 0 0 3.947340481202062 3.947340481202062 3.947340481202062 3.947340481202062 0 1.6677353201839438 1.0969100130080565 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PS]{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F};[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[PA]{M(Oxidation (M))|F}WTS{M(Oxidation (M))|F};{[WT]|[RM]}S{M(Oxidation (M))|F}{[ET]|[MV]}TS{M(Oxidation (M))|F};{[WT]|[RM]}SY[DV]TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[ET]|[MV]}{[DA]|[EG]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{[ET]|[MV]}{[ET]|[MV]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[DS]|[MA]|[CV]|TT}[DV]TS{M(Oxidation (M))|F};{I|L}[HC]W{[ET]|[MV]}T{[ES]|[DT]|[{I|L}C]};{I|L}[HC]{[ET]|[MV]}WT{[ES]|[DT]|[{I|L}C]} 4.6223;4.2649;3.8277;3.2048;2.908;2.8601;2.4987;2.315;1.8685;1.6202 -;-;+;-;-;-;-;-;-;- + 1512 NaN NaN 205342 NaN 17846 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21893 87.979 NaN 589240 35 0 98532 0.261 + 1026 AYGDIILTF 9 61 506.7710442986105 NaN 0 506.77099609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AYGDIILTF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 92.8221339359638 6.071734342692952E-05 1 T{I|L}{I|L}{I|L} 4 6 42.607 0 0 4.2122 0 0 165.07922716998252 403.12616907291255 568.2053962428951 0 0 0 0 0 1.9247425010840047 0 0.3807196863200844 0 T{I|L}{I|L}{I|L} 4.2122 - 189 + NaN NaN 172591.3 NaN 17847 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21894 87.983 NaN 181980 35 0 48241 0.261 + 378 AIKKGLFIL 9 43 501.83914768315145 1001.6637424331029 2 501.839111328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _AIKKGLFIL_ REV__ENSG00000112053|ENST00000490799|SLC26A8;REV__ENST00000486155.1_1_6:35928714-35992326:-|nuORF;REV__nc|ENSG00000112053|Q96RN1-2|SLC26A8;REV__nc|ENSG00000112053|Q96RN1-4|SLC26A8 12.531546534597751 0.2520865569484384 1 {I|L}{I|L} 2 -1 25.969 0 0 2.5926 0 0 757.484376168079 0 757.484376168079 0 16.505149978319906 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.5926 + + 18 NaN NaN 116845.4 NaN 17848 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21895 87.986 NaN 119890 35 0 22128 0.261 + -1 LMVDYEKL 8 39 513.7607449751794 1025.5069370171586 2 513.7608642578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LM(Oxidation (M))VDYEKL_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 14.838274106304384 0.4846187982323419 1 S{I|L} 2 -1 22.959 0 0 2.2388 0 0 807.3799223069249 0 807.3799223069249 0 22.95880017344075 0 0 0 0.5 0 0 0 S{I|L} 2.2388 - 3 NaN NaN 96280.6 NaN 17849 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21896 87.989 NaN 116960 35 0 7533.7 0.261 + 17977 MKQPKPPL 8 50 469.7788325949613 NaN 0 469.7790222167969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _MKQPKPPL_ REV__ENSG00000196220|ENST00000383836|SRGAP3;REV__IRAK2-SRGAP3|1|fusion 2.302733041254933 0.38822285293237185 1 H 1 -1 2.2185 0 0 0.23663 0 0 84.13339653582257 713.3336275690061 797.4670241048287 0 0 0 0 0 0 0 0 0 H 0.23663 - 8 + NaN NaN 96983.3 NaN 17850 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21897 87.993 NaN 212890 35 0 53159 0.261 -1 0 48 404.1209281980568 806.2273034629136 2 404.1212463378906 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 112018.9 NaN 17851 4044 21889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21899 87.997 NaN 1104300 35 0 192600 0.327 + 1709 CHASTTGF 8 66 412.1751535033214 822.3357540734428 2 412.1756591796875 MULTI HCD FTMS 0 0 0 21898 1014526.5 0.13955949598121795 7 -0.18100738525390625 1 Unmodified _CHASTTGF_ REV__chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5929 0 0 657.2566810527381 0 657.2566810527381 0 1.8618187372417339 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5929 + + 18 + NaN NaN 249198.1 NaN 17852 4045 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21900 88.002 NaN 969290 35 0 97542 0.261 + 16607 LVSARKSR 8 91 458.78776439326293 915.5609758533259 2 458.7878112792969 MULTI HCD FTMS 0 0 0 21898 801820.6875 0.6152639632416507 2 -0.05576324462890625 2 Unmodified _LVSARKSR_ REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant;REV__CTNNA3|p.S760Kfs*6|1|0.13|ENSG00000183230|chr10:65966734-65966735|-/CCAAATCTTT|frameshift_variant;REV__ENSG00000183230|ENST00000433211|CTNNA3;REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 11.640296217721598 0.50814828952472 1 A 1 -1 8.9794 0 0 0.98075 0 0 149.10483622958492 692.4068631917896 841.5116994213745 0 0 0 0 0 0.5 0 0 0 A 0.98075 + + 50 + NaN NaN 229336.4 NaN 17853 4045 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21901 88.005 NaN 501830 35 0 142540 0.261 -1 0 78 572.1258214135562 NaN 0 572.115234375 PEAK HCD FTMS 0 0 0 21898 110276.1875 0.40440457945894853 42 -1.0410690307617188 3 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 7.0783 0 0 0.61969 0 0 165.80519437308436 713.2619722955686 879.067166668653 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.61969 - 25 + NaN NaN 152950.6 NaN 17854 4045 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21902 88.009 NaN 124130 35 0 7471.3 0.261 -1 TVSVCVCAYVC 11 41 602.261421524503 1202.508290115806 2 602.259033203125 MULTI HCD FTMS 0 0 0 21898 65833.9375 0.3875935390467163 2 -0.05576324462890625 4 Carbamidomethyl (C) _TVSVCVCAYVC(Carbamidomethyl (C))_ ENST00000337929.7_1_16:27460613-27460832:+|nuORF 3.2813086475875832 0.40452996145431686 1 T 1 -1 6.9897 0 0 0.58126 0 0 478.18304705115594 620.2708834283811 1098.4539304795371 0 0 0 0 0 0 0 0 0 T 0.58126 + + 19 + NaN NaN 102946.3 NaN 17855 4045 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21904 88.014 NaN 1170000 35 0 205880 0.327 + 5906 FPDLFSEQL 9 79 548.2716015127073 1094.5286500922145 2 548.2717895507812 MULTI HCD FTMS 0 0 0 21903 755004 0.9398667419178501 3 -0.08941650390625 1 Unmodified _FPDLFSEQL_ ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 129.77232118876745 0.0006187813247758304 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SEQ{I|L} 9 3 + 83.408 0 0 7.6204 7.6204 90.856 0 0 0 7.147642715192504 51.4350781693193 7.147642715192504 9.208187539523749 0 1.805462187404089 0 1.9489700043360187 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SE[AG]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{M(Oxidation (M))|F}KSEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{M(Oxidation (M))|F}KSE[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ES]|[DT]|[{I|L}C]}KCEQ{I|L};[VP]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}TEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L};{[ES]|[DT]|[{I|L}C]}QK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L};[VP]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}TE[AG]{I|L};{[ES]|[DT]|[{I|L}C]}Q{I|L}[KC]{M(Oxidation (M))|F}Q{I|L} 7.6204;6.7792;6.7547;5.9134;4.8585;4.8538;4.4174;4.0933;4.0125;3.8219 -;-;-;-;-;-;-;-;-;- 1248 NaN NaN 257691.1 NaN 17856 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21905 88.018 NaN 486780 35 0 32027 0.261 -1 0 100 619.8695022068749 1237.7244514805498 2 619.8694458007812 MULTI HCD FTMS 0 0 0 21903 464463.125 0.700094895260522 3 -0.08941650390625 2 NaN NaN 1 D 1 -1 11.906 0 0 0.96194 0 0 61.05329172856006 1058.5963948662638 1119.6496865948238 0 0 0 0 0 0.3807196863200844 0 0.3494850021680094 0 D 0.96194 - 183 + NaN NaN 150282.4 NaN 17857 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21906 88.022 NaN 485700 35 0 237200 0.261 -1 0 61 606.3694677211702 1210.7243825091402 2 606.3696899414062 MULTI HCD FTMS 0 0 0 21903 190408.984375 0.2547526810526348 5 -0.14190673828125 3 NaN NaN 1 A 1 -1 2.4743 0 0 0.20436 0 0 122.10429506233534 1014.5664766900999 1136.6707717524353 0 0 0 0 0 0 0 0 0 A 0.20436 - 7 + NaN NaN 154625.4 NaN 17858 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21907 88.025 NaN 315480 35 0 18577 0.261 -1 LMRLPAPWSL 10 76 600.3340342714716 1198.6535156097432 2 600.3342895507812 MULTI HCD FTMS 0 0 0 21903 207445.671875 0.7131934735591089 -3 0.08193206787109375 4 Oxidation (M) _LM(Oxidation (M))RLPAPWSL_ ENST00000487556.5_1_1:43282804-43291395:+|nuORF 6.723162845929126 0.4397169348982109 1 {[HG]|PP}N 3 -1 5.9864 0 0 0.49943 0 0 0 887.4472956284341 887.4472956284341 0.5018968230078276 0 0 0 0 0.3054621874040891 0 0 0 {[HG]|PP}N 0.49943 - 114 + NaN NaN 130236.9 NaN 17859 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21908 88.028 NaN 542190 35 0 32753 0.261 + 5587 FLPPYTFQI 9 96 563.3019865727105 1124.5894202122208 2 563.3026123046875 MULTI HCD FTMS 0 0 0 21903 201622.5 0.6313924136849838 4 -0.112152099609375 5 Unmodified _FLPPYTFQI_ ENSG00000023608|ENST00000216294|SNAPC1 92.65332237495696 0.004456439685314431 1 {M(Oxidation (M))|F}TYPPE{I|L} 7 6 67.706 0 0 6.0205 0 0 259.15278823066564 0 259.15278823066564 0 39.35242281704263 0 0 0 2.579689690656103 0 0.6203715150305281 0 {M(Oxidation (M))|F}TYPPE{I|L} 6.0205 - 2346 NaN NaN 181749 NaN 17860 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21909 88.032 NaN 498790 35 0 57287 0.261 -1 NIWVISSF 8 80 504.2639761981428 1006.5133994630856 2 504.26409912109375 MULTI HCD FTMS 0 0 0 21903 220358.96875 0.5410065125749817 -3 0.08193206787109375 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NIWVISSF_ L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|23|2|anti-sense 18.13498045792455 0.4603629008820478 1 MP{I|L}GGVAD 8 -1 81.426 0 0 8.0899 0 0 0 263.1375826471313 263.1375826471313 63.63920993388689 0 0 0 0 2.2346368802282015 1.3979400086720375 0.25 0 MP{I|L}GGVAD 8.0899 - 415 + NaN NaN 160694.1 NaN 17861 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21910 88.035 NaN 153010 35 0 6863.6 0.261 + 23952 RVERARGPPL 10 71 575.843130245141 NaN 0 575.8431396484375 PEAK HCD FTMS 0 0 0 21903 183282.609375 0.9924012912796323 -1 0.0162506103515625 7 Unmodified _RVERARGPPL_ ENSG00000120055|ENST00000625129|C10orf95 2.9952420565917617 0.3376207769591857 1 {M(Oxidation (M))|F}W 2 10 6.4537 0 0 0.56135 0 0 165.25245599184035 648.3022014899935 813.5546574818338 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}W 0.56135 - 19 + NaN NaN 112620.3 NaN 17862 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21911 88.038 NaN 470060 35 0 76656 0.261 + 8066 GIALPELICTM 11 91 580.8060414374875 1159.5975299417748 2 580.806640625 MULTI HCD FTMS 0 0 0 21903 113073.6796875 0.43887453880580923 -2 0.04559326171875 8 Unmodified _GIALPELICTM_ ENSG00000167531|ENST00000301046|LALBA 17.11289562659939 0.30797719109864646 1 {[QN]|[E{I|L}]|[KN]}PQ{I|L}{I|L}{I|L} 7 7 21.985 0 0 1.8959 0 0 0 350.08441135666834 350.08441135666834 11.795153810628348 0 0 0 0 1.2614393726401687 0 0.2614393726401688 0.7302046884880937 {[QN]|[E{I|L}]|[KN]}PQ{I|L}{I|L}{I|L} 1.8959 - 208 NaN NaN 155354.3 NaN 17863 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21912 88.042 NaN 172180 35 0 48695 0.262 -1 0 54 467.30103153681665 932.5875101404333 2 467.3011474609375 MULTI HCD FTMS 0 0 0 21903 103782.6640625 0.3930945148023931 5 -0.14190673828125 9 NaN NaN 1 A 1 -1 5.4846 0 0 0.5881 0 0 122.10360510024528 736.4329928033811 858.5365979036264 0 0 0 0 0 0 0 0 0 A 0.5881 - 12 + NaN NaN 108177.4 NaN 17864 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21913 88.045 NaN 513300 35 0 50008 0.261 -1 MKKRTVMPLP 10 95 608.8474741125639 NaN 0 608.8475341796875 PEAK HCD FTMS 0 0 0 21903 66295.9921875 0.23610430061669507 5 -0.14190673828125 10 Oxidation (M) _M(Oxidation (M))KKRTVMPLP_ ENST00000423106.2_1_2:174063392-174063449:-|nuORF 3.2813086475875832 0.33737594360511275 1 QE{M(Oxidation (M))|F}[HS]E 6 -1 19.447 0 0 1.5997 0 0 165.23546835902545 290.11396204166255 455.349430400688 0 0 0 0 0 0 0 1.0941876774005248 0 QE{M(Oxidation (M))|F}[HS]E 1.5997 - 285 + NaN NaN 157408.3 NaN 17865 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21914 88.048 NaN 75427 35 0 7450.4 0.262 + 33937 YLRSVGDGE 9 40 498.24243692490626 NaN 0 497.7841491699219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _YLRSVGDGE_ ENSG00000060138|ENST00000228251|YBX3;ENSG00000065978|ENST00000321358|YBX1;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3 3.944395688203298 0.27613285122220627 1 G 1 8 6.9897 0 0 0.70286 0 0 165.99393975846118 768.4307378636801 934.4246776221412 0 0 0 0 0 0 0 0 0 + G 0.70286 + + 11 + NaN NaN 93721.3 NaN 17866 4046 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21916 88.053 NaN 825140 35 0 102030 0.327 + 30479 VLTTPRRG 8 75 450.2744669199843 898.5343809067687 2 450.2746887207031 MULTI HCD FTMS 0 0 0 21915 1008388.6875 0.5129591158630279 4 -0.10239410400390625 1 Unmodified _VLTTPRRG_ SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant 5.230669730166228 0.5342319408533849 1 P 1 7 8.8515 0 0 0.98511 0 0 678.4033822268843 120.05059992008046 798.4539821469648 0 0 0 0 0 0.4247425010840047 0 0 0 + P 0.98511 + + 6 + NaN NaN 205065.7 NaN 17867 4047 21915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21917 88.058 NaN 561310 35 0 64192 0.261 + 20146 NYITPNPIFF 10 64 613.315985162537 1224.617417391874 2 613.31640625 MULTI HCD FTMS 0 0 0 21915 284026.21875 0.8252701674940398 -2 0.05576324462890625 2 Unmodified _NYITPNPIFF_ ENSG00000139531|ENST00000266971|SUOX 64.69154705217129 0.02435962300912059 1 [YN]{I|L}T[NP][{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 78.79 0 0 6.4339 6.4339 94.166 0 0 0 21.363781092484686 71.80069055257668 21.363781092484686 78.79039059593687 0 2.305462187404089 1.3979400086720375 0.6861818737241735 1 + + [YN]{I|L}T[NP][{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.4339 + + 74 NaN NaN 182558.1 NaN 17868 4047 21915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21918 88.061 NaN 326340 35 0 27828 0.261 + 6248 FPEYLVVQI 9 70 554.3076712505833 1106.6007895679666 2 554.3079833984375 MULTI HCD FTMS 0 0 0 21915 56874.1484375 0.4342283083756677 3 -0.07263946533203125 3 Unmodified _FPEYLVVQI_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 22.736283301280096 0.1639198954644489 1 VVQ{I|L} 4 5 43.175 0 0 3.9016 0 0 649.3133412091812 0 649.3133412091812 0 -6.752509456924827 -6.752509456924827 0 0 1.4247425010840047 0 0 0 + VVQ{I|L} 3.9016 + + 412 NaN NaN 133056.5 NaN 17869 4047 21915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21919 88.065 NaN 619630 35 0 90588 0.261 + 17915 MILELDPTF 9 66 539.7781203951506 1077.5416878571011 2 539.7781372070312 MULTI HCD FTMS 0 0 0 21915 126019.3203125 0.0698541292808629 -7 0.209991455078125 4 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 156.15588289589118 2.3186882095317417E-06 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 9 2 + 101 0 0 9.3729 9.3729 89.152 0 0 0 15.057284721789173 43.37205316164642 15.057284721789173 1.5186375580366729 0 2.7302046884880937 1.6989700043360187 0.6861818737241735 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ES{M(Oxidation (M))|F}{I|L}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[{M(Oxidation (M))|F}V]E{I|L}[EP] 9.3729;9.2319;7.8334;7.1598;5.8666;5.6226;5.6203;4.8379;4.6722;4.4478 -;+;-;-;-;-;-;-;-;- + 514 NaN NaN 193225.3 NaN 17870 4047 21915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21921 88.07 NaN 792700 35 0 36518 0.327 -1 0 101 611.3560559615195 1220.6975589898389 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21920 642740.0625 0.4477777054982675 7 -0.17252349853515625 1 NaN NaN 1 T{[SA]|[TG]} 3 -1 12.007 0 0 0.98362 0 0 943.5466175763687 0 943.5466175763687 0 -0.044321917401077826 -0.044321917401077826 0 0 0.4247425010840047 0 0.3807196863200844 0 T{[SA]|[TG]} 0.98362 - 76 NaN NaN 202627.6 NaN 17871 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21922 88.075 NaN 944120 35 0 163190 0.261 + 12779 KYDVLFALF 9 81 558.3103241922371 1114.606095451274 2 558.3104858398438 MULTI HCD FTMS 0 0 0 21920 527866.75 0.0890068518010016 10 -0.265289306640625 2 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 43.77239144664712 0.04802738721622131 1 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 73.579 0 0 6.6013 6.6013 90.704 0 0 0 10.02960906985031 46.126590506049325 10.02960906985031 12.433787369250169 0 2.4247425010840047 1.5228787452803376 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.6013;5.4858;5.4546;5.1945;4.965;4.7746;4.3391;4.0477;3.8182;3.6279 -;-;-;-;-;-;-;-;-;- 1505 NaN NaN 220950 NaN 17872 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21923 88.078 NaN 571360 35 0 15115 0.261 -1 0 109 567.3304148038226 1132.646276674445 2 567.330078125 MULTI HCD FTMS 0 0 0 21920 247855.953125 0.06407989437865293 62 -1.5634613037109375 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1914 0 0 967.5673867592092 0 967.5673867592092 0 0.7306401783911909 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1914 - 588 + NaN NaN 184953.3 NaN 17873 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21924 88.082 NaN 560470 35 0 61187 0.261 -1 LEAMDAFTRF 10 98 608.7874328755192 NaN 0 608.7695922851562 PEAK HCD FTMS 0 0 0 21920 5092.0029296875 0.04086087383751051 16 -0.43270111083984375 4 Oxidation (M) _LEAM(Oxidation (M))DAFTRF_ ENST00000557982.1_1_15:90224764-90233935:-|nuORF 14.838274106304384 0.3224471714378502 1 QE{M(Oxidation (M))|F}[HS]E 6 -1 25.256 0 0 2.0777 0 0 165.11592813704243 290.11408411197505 455.2300122490175 0 0 0 0 0 0 0 1.3996498648046138 0 QE{M(Oxidation (M))|F}[HS]E 2.0777 - 451 + NaN NaN 182283.5 NaN 17874 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21925 88.085 NaN 248060 35 0 31152 0.262 + 32717 WPSLLGDML 9 50 524.2624620216635 1046.510371110127 2 524.2625732421875 MULTI HCD FTMS 0 0 0 21920 73349.9296875 0.31064570017936394 -6 0.17061614990234375 5 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 52.268347100219714 0.028397529699942435 1 {I|L}GD{M(Oxidation (M))|F}{I|L} 5 4 50.618 0 0 4.8368 0 0 483.2474537580094 0 483.2474537580094 0 43.62781577388333 0 0 0 1.805462187404089 0 0 0 + {I|L}GD{M(Oxidation (M))|F}{I|L} 4.8368 + + 68 NaN NaN 124235.8 NaN 17875 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21926 88.088 NaN 180500 35 0 46953 0.261 + 6978 FPVSIPAVL 9 34 471.7865705262004 941.5585881192009 2 471.78619384765625 MULTI HCD FTMS 0 0 0 21920 71646.7890625 0.2610677509601741 -5 0.13777923583984375 6 Unmodified _FPVSIPAVL_ ENSG00000151353|ENST00000281017|TMEM18 23.1484247019978 0.1603590852062899 1 V{I|L} 2 7 24.776 0 0 2.6314 0 0 711.3971669149654 0 711.3971669149654 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 + V{I|L} 2.6314 + + 5 NaN NaN 104651.3 NaN 17876 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21927 88.092 NaN 152040 35 0 10418 0.261 + -1 LEKLNKMKVF 10 64 633.3690189616517 1264.7234849901033 2 633.3692016601562 MULTI HCD FTMS 0 0 0 21920 35260.46875 0.3283532835546611 6 -0.15590667724609375 7 Oxidation (M) _LEKLNKM(Oxidation (M))KVF_ REV__ENSG00000144749|ENST00000273261|LRIG1;REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF;REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF;REV__nc|ENSG00000144749|Q96JA1-2|LRIG1 2.735195868890462 0.4608258780945842 1 {I|L}Y 2 -1 8.5835 0 0 0.67869 0 0 650.4153928043596 335.13511072330317 985.5505035276628 0 0 0 0 0 0 0 0 0 {I|L}Y 0.67869 - 9 + NaN NaN 113124 NaN 17877 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21928 88.095 NaN 164290 35 0 10727 0.261 -1 MLRIPQPLIM 10 57 622.3474647307514 1242.6803765283028 2 622.8480224609375 MULTI HCD FTMS 0 0 0 21920 26436.70703125 0.3267470362314817 4 -0.10890960693359375 8 2 Oxidation (M) _M(Oxidation (M))LRIPQPLIM(Oxidation (M))_ NALCN|p.R146Q|1|0.06|ENSG00000102452|chr13:101376995-101376995|C/T|missense_variant 4.3292370932331545 0.45238836448149167 1 {I|L}{I|L}ES[MN]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9 -1 18.082 0 0 1.4551 0 0 165.17361130178807 0 165.17361130178807 0 2.408037477650641 0 0 0 0 0 0 0 {I|L}{I|L}ES[MN]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.4551 - 72 + NaN NaN 113819.7 NaN 17878 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21929 88.098 NaN 314720 35 0 70580 0.264 + 31010 VSLFSPSVL 9 43 474.77369937741815 947.5328458216363 2 474.7738342285156 MULTI HCD FTMS 0 0 0 21920 68800.1640625 0.035437798216988524 -8 0.22632598876953125 9 Unmodified _VSLFSPSVL_ REV__ENSG00000173083|ENST00000311412|HPSE;REV__HPSE|p.T60S|1|0.33|ENSG00000173083|chr4:83334605-83334605|T/A|missense_variant;REV__nc|ENSG00000173083|Q9Y251-2|HPSE;REV__nc|ENSG00000173083|Q9Y251-3|HPSE;REV__nc|ENSG00000173083|Q9Y251-4|HPSE 34.10243960390752 0.09241788333544565 1 {I|L}SV{I|L} 4 -1 54.24 0 0 5.7244 0 0 517.2534471193454 0 517.2534471193454 0 47.250547101681875 0 0 0 1.3807196863200843 0 0.8494850021680094 0 {I|L}SV{I|L} 5.7244 - 47 NaN NaN 128047.5 NaN 17879 4048 21920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21931 88.103 NaN 3383000 35 0 709230 0.327 + 25162 SAISAFEIF 9 76 492.75585609790573 983.4971592626115 2 493.2730407714844 MULTI HCD FTMS 0 0 0 21930 161877.671875 0.8163658639254037 -1 0.0335693359375 1 Unmodified _SAISAFEIF_ ENSG00000119285|ENST00000366582|HEATR1 54.773552608820026 0.024892918755467567 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}D{I|L} 7 6 41.247 0 0 4.1939 0 0 0 127.0375658246377 127.0375658246377 -2.935595997417977 0 -2.935595997417977 0 0 0 1.3979400086720375 0.6989700043360187 0.7302046884880937 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}D{I|L} 4.1939 - 713 NaN NaN 593866.1 NaN 17880 4049 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21932 88.107 NaN 505530 35 0 63814 0.261 + -1 SKGCVTCT 8 55 428.1888513527505 NaN 0 428.1890563964844 PEAK HCD FTMS 0 0 0 21930 421152.8125 0.7640720057992161 6 -0.13895416259765625 2 Carbamidomethyl (C) _SKGC(Carbamidomethyl (C))VTCT_ REV__ENSG00000181220|ENST00000458143|ZNF746;REV__nc|ENSG00000181220|Q6NUN9-2|ZNF746;REV__nc|ENSG00000181220|Q6NUN9-3|ZNF746;REV__nc|ENSG00000181220|Q6NUN9|ZNF746 2.302733041254933 0.38822285293237185 1 R 1 -1 4.9743 0 0 0.58222 0 0 571.1630592955416 124.07670007877186 695.2397593743135 0 0 0 0 0 0 0 0 0.25 R 0.58222 - 3 + NaN NaN 171422.9 NaN 17881 4049 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21933 88.111 NaN 788580 35 0 170070 0.261 + 5254 FFDSVQVVF 9 51 544.2765448665174 1086.5385367998347 2 544.2770385742188 MULTI HCD FTMS 0 0 0 21930 623107.4375 1 0 0 3 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 96.11092074494114 0.00436583732602279 1 SVQVV{M(Oxidation (M))|F} 6 3 83.977 0 0 7.7289 0 0 409.1628590314469 0 409.1628590314469 0 67.05259398656281 0 0 0 2.7302046884880937 0 1.6237125054200234 0.3807196863200844 + SVQVV{M(Oxidation (M))|F} 7.7289 + + 262 NaN NaN 205597.3 NaN 17882 4049 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21934 88.114 NaN 645820 35 0 64573 0.261 + 33211 YFDPQYFEF 9 73 628.2690698653181 1254.523586797436 2 628.2689208984375 MULTI HCD FTMS 0 0 0 21930 230916.375 0.7469807440265137 3 -0.07534027099609375 4 Unmodified _YFDPQYFEF_ EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant;ENSG00000084623|ENST00000677711|EIF3I 34.93206674587334 0.08860942999206235 1 EYQY{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 7 6 42.515 0 0 3.3889 0 0 230.10487563300939 0 230.10487563300939 0 31.611913543060062 0 0 0 0.8252574989159953 0 0.5 0 EYQY{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.3889 - 198 NaN NaN 183625.5 NaN 17883 4049 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21935 88.118 NaN 176450 35 0 23524 0.261 + 13540 KYPENFFLL 9 55 585.8135793710412 NaN 0 585.8140869140625 PEAK HCD FTMS 0 0 0 21930 89816.46875 0.44432429014640024 41 -1.0082244873046875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 33.4449034751529 0.09929786623258978 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 4 7 29.201 0 0 2.4966 0 0 131.0954021533267 514.2307222955686 645.3261244488954 0 0 0 0 0 1.3807196863200843 0 0 0.4247425010840047 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 2.4966 - 42 + NaN NaN 124480.9 NaN 17884 4049 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21936 88.121 NaN 137490 35 0 31056 0.261 + -1 DLICCNDR 8 45 533.2265268363396 1064.4385007394792 2 533.2267456054688 MULTI HCD FTMS 0 0 0 21930 28407.3203125 0.6416199057016615 1 -0.022735595703125 6 2 Carbamidomethyl (C) _DLIC(Carbamidomethyl (C))C(Carbamidomethyl (C))NDR_ REV__ENSG00000171557|ENST00000336098|FGG;REV__nc|ENSG00000171557|P02679-2|FGG 2.0597508629832335 0.5389364538378849 1 V 1 -1 5.4846 0 0 0.51525 0 0 129.96115806545419 832.3927096002561 962.3538676657104 0 0 0 0 0 0 0 0 0 V 0.51525 - 3 + NaN NaN 113936.4 NaN 17885 4049 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21938 88.126 NaN 3056100 35 0 150340 0.327 -1 0 123 589.3431010203685 1176.671649107537 2 589.34326171875 MULTI HCD FTMS 0 0 0 21937 4217739.5 0.921654023187433 1 -0.029754638671875 1 NaN NaN 1 {M(Oxidation (M))|F}N 2 -1 12.307 0 0 1.0459 0 0 897.5192738263687 0 897.5192738263687 0 1.8225812659254377 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 1.0459 - 244 NaN NaN 515340.1 NaN 17886 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21939 88.13 NaN 1445900 35 0 68319 0.261 -1 0 127 597.8562607199011 1193.6979685066021 2 597.8564453125 MULTI HCD FTMS 0 0 0 21937 1650757.875 0.8622800505873773 -5 0.1284027099609375 2 NaN NaN 1 W 1 -1 11.259 0 0 0.94321 0 0 989.6081380396084 0 989.6081380396084 0 0.902391106047169 0 0 0 0 0 0 0 W 0.94321 - 152 + NaN NaN 309136.2 NaN 17887 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21940 88.134 NaN 795030 35 0 145860 0.262 + 1027 AYGDIILTF 9 63 506.7710442986105 NaN 0 506.7710266113281 PEAK HCD FTMS 0 0 0 21937 308580.5625 0.534451368584131 1 -0.029754638671875 3 Unmodified _AYGDIILTF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 112.59319219568356 1.8842603961473373E-08 1 T{I|L}{I|L}{I|L} 4 6 41.983 0 0 4.1504 0 0 165.07875982215756 403.12787805728755 568.2066378794451 0 0 0 0 0 1.9247425010840047 0 0.3807196863200844 0 T{I|L}{I|L}{I|L} 4.1504 - 156 + NaN NaN 213658.7 NaN 17888 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21941 88.137 NaN 299350 35 0 19646 0.261 + 28127 TIPDLDWEL 9 64 551.2769790979767 1100.5394052627532 2 551.27734375 MULTI HCD FTMS 0 0 0 21937 441037.8125 0.6800668636532727 -9 0.2563934326171875 4 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 96.28474662873226 0.004361282420133734 1 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 57.249 0 0 5.2019 5.2019 84.033 0 0 0 4.986512420283233 16.478174818886373 4.986512420283233 4.986512420283233 0 2.024227503252014 1.5228787452803376 1.4876954943324545 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]{[ET]|[MV]}{I|L}DWE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}D[DG][VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}[DP][VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WM][DP][VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{[MG]|[TS]}[DP][VP] 5.2019;4.7488;2.8435;2.3476;2.2019;1.7684;1.7268 +;-;-;-;-;-;- + 352 NaN NaN 137586 NaN 17889 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21942 88.141 NaN 404300 35 0 95355 0.261 + 35996 YYYVGFAYL 9 47 579.7788599750471 1157.5431670168941 2 579.779296875 MULTI HCD FTMS 0 0 0 21937 284644.125 0.7741416660554463 -1 0.022735595703125 5 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 67.41302359171755 0.009925318700911543 1 YYYVG{M(Oxidation (M))|F}AY{I|L} 9 0 + 64.887 0 0 5.6056 5.6056 91.013 0 0 0 3.2568864632742844 41.33085333508717 3.2568864632742844 27.26280941356464 0 1.805462187404089 0 0 0 + + YYYVG{M(Oxidation (M))|F}AY{I|L};YYYV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L} 5.6056;3.2504 +;- + 80 NaN NaN 138351.5 NaN 17890 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21943 88.144 NaN 332590 35 0 41773 0.261 + 28250 TLLDYWQAL 9 61 561.7951233285085 NaN 0 561.7808837890625 PEAK HCD FTMS 0 0 0 21937 42975.7109375 0.58832781963379 4 -0.09960174560546875 6 Unmodified _TLLDYWQAL_ ENSG00000183778|ENST00000684187|B3GALT5 18.1463463914782 0.1998403495282098 1 VP 2 9 12.563 0 0 1.1201 0 0 131.0958757218811 791.3393648736936 922.4352405955747 0 0 0 0 0 0.7614393726401688 0 0 0 VP 1.1201 - 120 + NaN NaN 133928.4 NaN 17891 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21944 88.147 NaN 165270 35 0 29698 0.264 -1 0 38 404.1209281980568 806.2273034629136 2 404.1210021972656 MULTI HCD FTMS 0 0 0 21937 87295.1875 0.6972147125256539 3 -0.06002044677734375 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 122969.7 NaN 17892 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21945 88.151 NaN 113570 35 0 12602 0.261 + 1714 CHGLMMLLL 9 47 515.767133058623 1029.519713184046 2 515.7681274414062 MULTI HCD FTMS 0 0 0 21937 31004.830078125 0.3209627909384192 3 -0.06002044677734375 8 Unmodified _CHGLMMLLL_ ENST00000395246.5_1_5:130728068-130728134:+|nuORF 14.581692164780916 0.23437375358055648 1 {I|L}{I|L} 2 7 24.776 0 0 2.4066 0 0 785.343553611525 0 785.343553611525 0 14.714628317912782 0 0 0 0.3807196863200844 0 0 0 + {I|L}{I|L} 2.4066 + + 15 NaN NaN 110267.2 NaN 17893 4050 21937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21947 88.156 NaN 997230 35 0 176430 0.327 + 1710 CHASTTGF 8 71 412.1751535033214 822.3357540734428 2 412.17559814453125 MULTI HCD FTMS 0 0 0 21946 22886.26171875 0.003148261923530822 13 -0.34664154052734375 1 Unmodified _CHASTTGF_ REV__chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;REV__chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63 2.8892196856762586 0.5377058178582064 1 {I|L} 1 -1 14.124 0 0 1.7176 0 0 155.09384951771932 551.1348376878333 706.2286872055527 0 0 0 0 0 0.7134679910804405 0 0 0 {I|L} 1.7176 - 13 + NaN NaN 245638.2 NaN 17894 4051 21946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21948 88.16 NaN 314160 35 0 28484 0.261 -1 0 96 619.8695022068749 1237.7244514805498 2 619.8692626953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 D 1 -1 11.154 0 0 0.90113 0 0 105.080130938653 1014.5678194635374 1119.6479504021904 0 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 D 0.90113 - 95 + NaN NaN 137261.6 NaN 17895 4051 21946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21949 88.163 NaN 254790 35 0 22450 0.264 -1 0 75 458.78776439326293 915.5609758533259 2 458.78790283203125 MULTI HCD FTMS 0 0 0 21946 7797.92724609375 0.005983611669412922 8 -0.20278167724609375 3 NaN NaN 1 A 1 -1 9.2917 0 0 1.0149 0 0 105.07940003349445 736.4332394486007 841.5126394820952 0 0 0 0 0 0.3807196863200844 0 0 0 A 1.0149 - 39 + NaN NaN 132637.6 NaN 17896 4051 21946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21950 88.167 NaN 432870 35 0 56628 0.261 + 5907 FPDLFSEQL 9 69 548.2716015127073 1094.5286500922145 2 548.2715454101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FPDLFSEQL_ ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 96.11092074494114 0.00436583732602279 1 K{M(Oxidation (M))|F}SEQ{I|L} 6 4 63.854 0 0 5.834 0 0 344.13206679511876 0 344.13206679511876 0 33.43469890820727 0 0 0 1.7302046884880937 0 1.0044321917401078 0.28872548999643577 K{M(Oxidation (M))|F}SEQ{I|L} 5.834 - 944 NaN NaN 170314.8 NaN 17897 4051 21946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21951 88.17 NaN 206080 35 0 29022 0.261 + 11419 IYPTGLFTPEL 11 57 625.836779829483 1249.659006725766 2 625.8364868164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IYPTGLFTPEL_ ENSG00000065615|ENST00000369681|CYB5R4 28.494509381512117 0.21104904156558496 1 {M(Oxidation (M))|F}T[EP]{I|L} 5 6 36.466 0 0 2.9181 0 0 644.3539906232437 0 644.3539906232437 0 25.039237471316298 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}T[EP]{I|L} 2.9181 + + 137 NaN NaN 116885.3 NaN 17898 4051 21946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21952 88.173 NaN 99430 35 0 10672 0.263 + 6817 FPSLVAFAL 9 40 482.7778153955304 963.5410778578608 2 482.77783203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FPSLVAFAL_ REV__ENSG00000196171|ENST00000359610|OR6K2 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}PV 3 -1 30.445 0 0 3.1597 0 0 0 617.3300051177358 617.3300051177358 30.445312593723983 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}PV 3.1597 - 6 + NaN NaN 96991 NaN 17899 4051 21946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21955 88.186 NaN 1274600 35 0 202600 0.327 + 17916 MILELDPTF 9 69 539.7781203951506 1077.5416878571011 2 539.7783203125 MULTI HCD FTMS 0 0 0 21954 644873.9375 0.3574619136833722 -2 0.03026580810546875 1 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 1 M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 122.21 0 0 11.341 11.341 96.082 0 0 0 62.879552258837705 16.478174818886373 16.478174818886373 12.830918867322296 0 2.774227503252014 2 2.666386562212267 0 + + M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ES{M(Oxidation (M))|F}{I|L}[EP] 11.341;10.151;8.6846;8.5004;7.0344;7.0267;5.6552;5.5606;5.2623;5.1125 +;-;-;-;-;-;-;-;-;- + 769 + NaN NaN 285073.2 NaN 17900 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21956 88.19 NaN 828030 35 0 359770 0.261 -1 0 85 606.3694677211702 1210.7243825091402 2 606.3697509765625 MULTI HCD FTMS 0 0 0 21954 203777.4375 0.27263865048994346 11 -0.316375732421875 2 NaN NaN 1 D 1 -1 6.3515 0 0 0.5246 0 0 122.10356081486073 970.5439299636138 1092.6474907784745 0 0 0 0 0 0 0 0.3252574989159953 0 D 0.5246 - 28 + NaN NaN 207206.4 NaN 17901 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21957 88.194 NaN 529150 35 0 62199 0.261 + 20147 NYITPNPIFF 10 71 613.315985162537 1224.617417391874 2 613.3162231445312 MULTI HCD FTMS 0 0 0 21954 294831.15625 0.8566651303239904 4 -0.11573028564453125 3 Unmodified _NYITPNPIFF_ ENSG00000139531|ENST00000266971|SUOX 57.2037768669896 0.05159098836169478 1 [YN]{I|L}T[NP][{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 82.796 0 0 6.7609 6.7609 94.85 0 0 0 24.92870292316539 74.21204671777453 24.92870292316539 82.79554057425678 0 2.305462187404089 1.6989700043360187 0.7059771852360797 1.079689690656103 + + [YN]{I|L}T[NP][{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7609 + + 86 NaN NaN 168961.2 NaN 17902 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21958 88.197 NaN 282930 35 0 33696 0.264 + 31259 VVTPRRAT 8 57 450.2744669199843 898.5343809067687 2 450.2746887207031 MULTI HCD FTMS 0 0 0 21954 335863.125 0.1708508373672068 10 -0.28626251220703125 4 Unmodified _VVTPRRAT_ REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF 2.0597508629832335 0.5389364538378849 1 P 1 -1 9.6041 0 0 1.0689 0 0 678.4033974856734 120.0502184503539 798.4536159360273 0 0 0 0 0 0.5 0 0 0 P 1.0689 + + 2 + NaN NaN 134128.3 NaN 17903 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21959 88.201 NaN 418990 35 0 22128 0.261 + 14698 LHAFIAQALCL 11 88 600.3340342714716 1198.6535156097432 2 600.333984375 MULTI HCD FTMS 0 0 0 21954 189145.5625 0.6502781162334941 3 -0.0926666259765625 5 Unmodified _LHAFIAQALCL_ ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;nc|ENSG00000112584|Q96EK7-3|FAM120B 6.2057823575117 0.391704213221645 1 W{I|L}[YQ]{[HG]|PP}N 7 9 7.4738 0 0 0.62352 0 0 282.1666737287125 0 282.1666737287125 0 1.989291844916644 0 0 0 0.3252574989159953 0 0 0.3252574989159953 W{I|L}[YQ]{[HG]|PP}N 0.62352 - 290 NaN NaN 139214.5 NaN 17904 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21960 88.204 NaN 529710 35 0 72636 0.261 + -1 APLMLRLGRSS 11 108 608.8474741125639 NaN 0 608.8472290039062 PEAK HCD FTMS 0 0 0 21954 58556.84765625 0.20854237346800045 11 -0.316375732421875 6 Oxidation (M) _APLM(Oxidation (M))LRLGRSS_ REV__ENST00000270066.10_1_19:44233122-44233236:-|nuORF 4.897010918128616 0.3282287337590871 1 VW{M(Oxidation (M))|F}E 4 -1 18.197 0 0 1.4969 0 0 361.26616588415635 290.1145113580688 651.3806772422251 0 0 0 0 0 0 0 0.3494850021680094 0 VW{M(Oxidation (M))|F}E 1.4969 - 288 + NaN NaN 168182.4 NaN 17905 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21961 88.207 NaN 562790 35 0 59251 0.261 + 34194 YPDLFQVNL 9 84 554.7873756504689 1107.5601983677377 2 554.787109375 MULTI HCD FTMS 0 0 0 21954 169644.171875 0.3989033821611433 -2 0.03026580810546875 7 Unmodified _YPDLFQVNL_ ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 75.76082778847304 0.0072241045649327805 1 NNE{M(Oxidation (M))|F}QVN{I|L} 8 4 60.187 0 0 5.4342 0 0 131.0962834280877 0 131.0962834280877 0 28.758038696356767 0 0 0 1.1549471895720984 0 0.2614393726401688 1.7174165578762484 NNE{M(Oxidation (M))|F}QVN{I|L} 5.4342 - 1261 + NaN NaN 181761.2 NaN 17906 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21962 88.211 NaN 357730 35 0 71668 0.261 -1 0 64 485.7649551238249 969.5153573144498 2 485.7648010253906 MULTI HCD FTMS 0 0 0 21954 107463.5078125 0.2536136546234498 -4 0.08275604248046875 8 NaN NaN 1 {I|L}{I|L}DAS{I|L} 6 -1 68.646 0 0 7.0805 0 0 339.17651862157396 0 339.17651862157396 0 54.504412890910956 0 0 0 2.4247425010840047 0 0.3252574989159953 0 {I|L}{I|L}DAS{I|L} 7.0805 - 226 NaN NaN 137312.4 NaN 17907 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21963 88.214 NaN 938020 35 0 115920 0.261 + 31766 VYLPPEAFTF 10 87 592.3054977094678 1182.5964424857355 2 592.2865600585938 MULTI HCD FTMS 0 0 0 21954 37403.34375 0.15637680881077368 19 -0.4834136962890625 9 Unmodified _VYLPPEAFTF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 41.8396318013385 0.12944265636084 1 [YV]{I|L}YT{[QS]|[NT]}Y 8 6 42.216 0 0 3.5698 0 0 0 162.09397459944412 162.09397459944412 14.525618827129279 0 0 0 0 0.4247425010840047 1.3979400086720375 0.7614393726401688 0 [YV]{I|L}YT{[QS]|[NT]}Y 3.5698 - 2105 NaN NaN 225719.1 NaN 17908 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21964 88.217 NaN 139940 35 0 6234.1 0.261 + 35046 YTKLEQKLK 9 77 575.843130245141 NaN 0 575.84326171875 PEAK HCD FTMS 0 0 0 21954 87653.7421875 0.474609605510299 6 -0.172515869140625 10 Unmodified _YTKLEQKLK_ ENSG00000137216|ENST00000323267|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF;nc|ENSG00000137216|Q5T3F8-2|TMEM63B;nc|ENSG00000137216|Q5T3F8-3|TMEM63B 3.944395688203298 0.27613285122220627 1 K 1 8 3.9794 0 0 0.34613 0 0 779.4514449611819 239.10372339420158 1018.5551683553834 0 0 0 0 0 0 0 0 0 + K 0.34613 + + 39 + NaN NaN 116467.7 NaN 17909 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21965 88.221 NaN 460340 35 0 67032 0.261 + 20281 NYMKWWRF 8 81 615.7990305784273 1229.5835082236545 2 615.7994995117188 MULTI HCD FTMS 0 0 0 21954 128936.203125 1 0 0 11 Unmodified _NYMKWWRF_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-2|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37-5|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 9.347437153973935 0.5250182646323369 1 [YN]AR 4 -1 31.471 0 0 2.5595 0 0 0 722.3233208059388 722.3233208059388 12.530834337684311 0 0 0 0 0 1.5228787452803376 0 0.3054621874040891 [YN]AR 2.5595 - 168 NaN NaN 149631.2 NaN 17910 4053 21954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21967 88.225 NaN 624680 35 0 39093 0.327 -1 0 97 611.3560559615195 1220.6975589898389 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21966 626513.375 0.43647305946713977 13 -0.34662628173828125 1 NaN NaN 1 T{[SA]|[TG]} 3 -1 11.452 0 0 0.93819 0 0 943.5489979474625 0 943.5489979474625 0 3.3534811358448753 0 0 0 0.4247425010840047 0 0.3252574989159953 0 T{[SA]|[TG]} 0.93819 - 99 NaN NaN 186693.5 NaN 17911 4054 21966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21968 88.23 NaN 703260 35 0 101390 0.261 + 12780 KYDVLFALF 9 77 558.3103241922371 1114.606095451274 2 558.3104858398438 MULTI HCD FTMS 0 0 0 21966 192721.078125 0.03249588355319051 16 -0.41358184814453125 2 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 43.77239144664712 0.04802738721622131 1 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 71.137 0 0 6.3822 6.3822 90.823 0 0 0 13.133637307377057 49.25250945692483 13.133637307377057 14.71726222832956 0 2.305462187404089 1.5228787452803376 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT]VAA{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 6.3822;5.0618;4.8174;4.7786;4.7459 -;-;-;-;- 1132 NaN NaN 197943.9 NaN 17912 4054 21966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21969 88.234 NaN 319390 35 0 35304 0.261 -1 0 73 504.2639761981428 1006.5133994630856 2 504.2641296386719 MULTI HCD FTMS 0 0 0 21966 107383.6875 0.263639254673253 4 -0.10938262939453125 3 NaN NaN 1 MP{I|L}KR{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F} 8 -1 + 43.67 0 0 4.3387 4.3387 89.755 0 0 0 26.591248097545304 5.951797469533027 5.951797469533027 43.66959197570765 0 0.3807196863200844 1.2218487496163564 0 0 MP{I|L}KR{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F} 4.3387 - 66 + NaN NaN 129534.6 NaN 17913 4054 21966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21970 88.237 NaN 251780 35 0 65297 0.261 + 25234 SARCSSPFF 9 49 501.229300191555 1000.44404744991 2 501.22930908203125 MULTI HCD FTMS 0 0 0 21966 110646.6796875 0.535638874952148 -3 0.06984710693359375 4 Unmodified _SARCSSPFF_ ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant 3.5964929083625545 0.32375295897743744 1 SAC 3 6 19.922 0 0 1.9913 0 0 0 736.3314630287366 736.3314630287366 16.82258126592544 0 0 0 0 0 0 0 0 SAC 1.9913 - 4 + NaN NaN 117768.6 NaN 17914 4054 21966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21972 88.242 NaN 1076000 35 0 255920 0.326 + 4840 FAADIISVL 9 46 474.77369937741815 947.5328458216363 2 474.77362060546875 MULTI HCD FTMS 0 0 0 21971 1941351.75 0.9999573768777674 -2 0.0561981201171875 1 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 68.08070601005525 0.009709267492204555 1 {I|L}{I|L}SV{I|L} 5 4 63.443 0 0 6.6956 0 0 404.1696034162125 0 404.1696034162125 0 45.238868150132916 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + {I|L}{I|L}SV{I|L} 6.6956 + + 80 NaN NaN 252696.3 NaN 17915 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21973 88.246 NaN 597110 35 0 127650 0.261 + 5255 FFDSVQVVF 9 56 544.2765448665174 1086.5385367998347 2 544.2766723632812 MULTI HCD FTMS 0 0 0 21971 512278.6875 0.8221354082296602 6 -0.17327117919921875 2 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 60.07390631473393 0.0174780869009295 1 SVQVV{M(Oxidation (M))|F} 6 3 70.394 0 0 6.4787 0 0 409.16441542793126 0 409.16441542793126 0 57.204043569727574 0 0 0 2.4247425010840047 0 1.1989700043360187 0 + SVQVV{M(Oxidation (M))|F} 6.4787 + + 216 NaN NaN 187017 NaN 17916 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21974 88.25 NaN 336150 35 0 101620 0.261 + 6979 FPVSIPAVL 9 42 471.7865705262004 941.5585881192009 2 471.78680419921875 MULTI HCD FTMS 0 0 0 21971 257186.515625 0.9371404649122678 1 -0.036468505859375 3 Unmodified _FPVSIPAVL_ ENSG00000151353|ENST00000281017|TMEM18 23.1484247019978 0.1603590852062899 1 V{I|L} 2 7 24.776 0 0 2.6314 0 0 711.3952338869246 0 711.3952338869246 0 19.089934634871284 0 0 0 0.3807196863200844 0 0 0 + V{I|L} 2.6314 + + 17 NaN NaN 137028.3 NaN 17917 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21975 88.254 NaN 537730 35 0 22421 0.261 -1 0 107 567.3304148038226 1132.646276674445 2 567.330322265625 MULTI HCD FTMS 0 0 0 21971 225924.25 0.05840974120268622 69 -1.7270431518554688 4 NaN NaN 1 [{I|L}T]TV[HC]WS 8 -1 19.678 0 0 1.7373 0 0 0 202.17688764926996 202.17688764926996 -0.8784695294824871 0 -0.8784695294824871 0 0 0.3807196863200844 1.2218487496163564 0.2215141619232908 0 [{I|L}T]TV[HC]WS 1.7373 - 1082 NaN NaN 168996 NaN 17918 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21976 88.257 NaN 738350 35 0 103210 0.261 + 8297 GYADIVQLL 9 51 496.2764359399022 990.5383189466045 2 496.276611328125 MULTI HCD FTMS 0 0 0 21971 262377.375 0.07186085262968626 -7 0.17252349853515625 5 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 92.65332237495696 0.004456439685314431 1 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 100.67 0 0 10.163 10.163 93.925 0 0 0 19.621892823592972 87.48441900057003 19.621892823592972 9.208187539523749 0 2.6989700043360187 1.3979400086720375 1.110924374808178 0 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]VQ{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}Q{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[AG]{I|L}{I|L} 10.163;9.2337;7.9732;7.0381;5.5265;4.5914;4.0077;3.0726 +;-;-;-;-;-;-;- + 227 NaN NaN 193907.9 NaN 17919 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21977 88.26 NaN 278840 35 0 39069 0.261 + 32718 WPSLLGDML 9 47 524.2624620216635 1046.510371110127 2 524.2627563476562 MULTI HCD FTMS 0 0 0 21971 236120.859375 1 0 0 6 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 43.85829265575387 0.04763305254408404 1 GD{M(Oxidation (M))|F}{I|L} 4 5 50.433 0 0 4.8192 0 0 596.3318838651168 0 596.3318838651168 0 43.44335023848103 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + GD{M(Oxidation (M))|F}{I|L} 4.8192 + + 25 NaN NaN 133445 NaN 17920 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21978 88.264 NaN 87077 35 0 21990 0.263 + 25322 SCMTANKG 8 41 406.17548932291373 810.3364257126275 2 406.1756896972656 MULTI HCD FTMS 0 0 0 21971 137876.03125 1 0 0 7 Unmodified _SCMTANKG_ REV__ENST00000392717.6_1_2:165538375-165538423:-|nuORF 0.6903765706972694 0.5409681170271811 1 A 1 -1 0.48455 0 0 0.059796 0 0 520.1915720522744 216.0858553522094 736.2774274044838 0 0 0 0 0 0 0 0 0 A 0.059796 + + 2 + NaN NaN 95364.7 NaN 17921 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21979 88.267 NaN 250110 35 0 33960 0.261 + 33212 YFDPQYFEF 9 57 628.2690698653181 1254.523586797436 2 628.2692260742188 MULTI HCD FTMS 0 0 0 21971 102883.9140625 0.3328144341204306 8 -0.23006439208984375 8 Unmodified _YFDPQYFEF_ EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant;ENSG00000084623|ENST00000677711|EIF3I 27.223235318498237 0.1251536255799991 1 VY[QP]ME{M(Oxidation (M))|F} 7 5 42.088 0 0 3.3549 0 0 342.1156483380875 0 342.1156483380875 0 35.098112234466385 0 0 0 1.6382104921644451 0 0 0 VY[QP]ME{M(Oxidation (M))|F} 3.3549 - 169 NaN NaN 117064.6 NaN 17922 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21980 88.27 NaN 251680 35 0 24149 0.262 + 6381 FPGFFSPML 9 54 529.7545233061517 1057.4944936791032 2 529.7547607421875 MULTI HCD FTMS 0 0 0 21971 85360.453125 0.22056724187841945 -9 0.22837066650390625 9 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 53.57557251787612 0.02656881086235134 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 6 3 54.373 0 0 5.1417 0 0 301.1429615705094 0 301.1429615705094 0 47.38351285388511 0 0 0 1.5 0 0.4247425010840047 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5.1417 + + 135 NaN NaN 140427.6 NaN 17923 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21981 88.274 NaN 241600 35 0 51196 0.261 + 16686 LWTDELEWN 9 64 603.277981986713 1204.541411040226 2 603.27734375 MULTI HCD FTMS 0 0 0 21971 69335.4375 0.23452338004878967 -4 0.08646392822265625 10 Unmodified _LWTDELEWN_ REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF 18.1463463914782 0.20357593197100715 1 {I|L}WDET 5 -1 63.32 0 0 5.2568 0 0 0 557.2383206592127 557.2383206592127 37.35120505172502 0 0 0 0 1.2887254899964358 1.6989700043360187 0 0 {I|L}WDET 5.2568 - 242 + NaN NaN 133256.3 NaN 17924 4055 21971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21983 88.279 NaN 2565000 35 0 125320 0.327 -1 0 102 589.3431010203685 1176.671649107537 2 589.3433227539062 MULTI HCD FTMS 0 0 0 21982 3483110.5 0.761124010985361 7 -0.19359588623046875 1 NaN NaN 1 {[HG]|PP}N 3 -1 10.067 0 0 0.85551 0 0 0 865.4656168259694 865.4656168259694 -2.735345363363937 0 -2.735345363363937 0 0 0.7134679910804405 0 0 0 {[HG]|PP}N 0.85551 - 120 + NaN NaN 337287.7 NaN 17925 4056 21982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21984 88.283 NaN 1278600 35 0 56722 0.248 -1 0 120 597.8562607199011 1193.6979685066021 2 597.8562622070312 MULTI HCD FTMS 0 0 0 21982 1223234.875 0.6389616829150333 1 -0.02306365966796875 2 NaN NaN 1 D 1 -1 10.401 0 0 0.87133 0 0 61.052774558561005 1014.5703628182088 1075.6231373767698 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.87133 - 164 + NaN NaN 255905.3 NaN 17926 4056 21982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21985 88.287 NaN 492640 35 0 40305 0.261 + 21545 PYLLDLHLF 9 90 565.8160041000663 1129.6174552669324 2 565.8161010742188 MULTI HCD FTMS 0 0 0 21982 35863.84765625 0.0834235036816616 1 -0.02306365966796875 3 Unmodified _PYLLDLHLF_ ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 104.79918948944588 0.003791450360204016 1 PY{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 90.009 0 0 7.9681 7.9681 92.387 0 0 0 75.39484822592328 14.09256854528806 14.09256854528806 10.179449244242818 0 2.953119819790884 1.6989700043360187 0 0 + + PY{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};PY{I|L}{I|L}[PA][NP]V{M(Oxidation (M))|F};PY{I|L}{I|L}D[WK][VP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RN]{I|L}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}[RN]{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS][PA]{I|L}{I|L}{[QN]|[E{I|L}]|[KN]};[{I|L}T][WK][EP]P{I|L}{M(Oxidation (M))|F};[H{I|L}]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}P{I|L}{M(Oxidation (M))|F} 7.9681;7.067;5.3934;4.5435;4.4889;3.3417;2.9671;2.2803;1.6571;0.81255 +;+;-;-;-;-;-;-;-;- + 1197 + NaN NaN 154666.4 NaN 17927 4056 21982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21986 88.29 NaN 377890 35 0 53604 0.263 + 17825 MGPYYPAG 8 55 428.1888513527505 NaN 0 428.1886901855469 PEAK HCD FTMS 0 0 0 21982 94852.109375 0.1720844294835212 13 -0.33689117431640625 4 Unmodified _MGPYYPAG_ chr6:31640306-31640474|105|15.21|0.84|4.18|-|2|BAG6,None|1 2.8892196856762586 0.38822285293237185 1 R 1 8 2.4743 0 0 0.2896 0 0 571.1637001646823 124.07695947818593 695.2406596428682 0 0 0 0 0 0 0 0 0 R 0.2896 - 4 + NaN NaN 144498.8 NaN 17928 4056 21982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21987 88.293 NaN 180820 35 0 20846 0.261 + 13541 KYPENFFLL 9 52 585.8135793710412 NaN 0 585.8133544921875 PEAK HCD FTMS 0 0 0 21982 102218.0859375 0.5056753967996924 48 -1.1865310668945312 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 22.65808497894818 0.16955659035853546 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HT]D 6 8 26.515 0 0 2.267 0 0 131.09529774145113 275.1399019830688 406.23519972451993 0 0 0 0 0 1.110924374808178 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HT]D 2.267 - 43 + NaN NaN 124663.3 NaN 17929 4056 21982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21988 88.297 NaN 133550 35 0 22049 0.261 + 2347 DPAPIAELQL 10 47 533.79409365339 1065.5736343735798 2 533.794677734375 MULTI HCD FTMS 0 0 0 21982 31778.669921875 0.41260140644801885 1 -0.02306365966796875 6 Unmodified _DPAPIAELQL_ REV__ENSG00000186716|ENST00000305877|BCR;REV__ENST00000436990.2_1_22:23654089-23657706:+|nuORF;REV__nc|ENSG00000186716|P11274-2|BCR 5.731851221503515 0.44496410492002586 1 V{I|L} 2 -1 25.217 0 0 2.3665 0 0 835.4118136898305 0 835.4118136898305 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.3665 - 5 NaN NaN 95900.4 NaN 17930 4056 21982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21990 88.302 NaN 1376000 35 0 92265 0.327 + 28128 TIPDLDWEL 9 94 551.2769790979767 1100.5394052627532 2 551.27734375 MULTI HCD FTMS 0 0 0 21989 596353.4375 0.9195588232459615 -2 0.05953216552734375 1 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 107.99703571036002 0.003269392969029945 1 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 57.904 0 0 5.2615 5.2615 84.912 0 0 0 6.89240487828426 16.478174818886373 6.89240487828426 6.89240487828426 0 1.992992819099939 1.6989700043360187 1.2834281652289512 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}{[HG]|PP}T{I|L};[{I|L}T][YE]VSYN{I|L};[VP]ED[{I|L}T]WE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WM]{[HG]|PP}T{I|L};[TP]{NN|[MP]|[D{I|L}]|[EV]}{I|L}DWE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}[DP][VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}D[DG][VP] 5.2615;4.6352;3.6182;3.5227;3.4698;3.1751;2.9756;2.7863;2.6835;2.6681 +;-;-;-;-;-;-;-;-;- + 1715 NaN NaN 298209.4 NaN 17931 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21991 88.306 NaN 266500 35 0 17988 0.261 -1 0 84 619.8695022068749 1237.7244514805498 2 619.8694458007812 MULTI HCD FTMS 0 0 0 21989 274346.1875 0.41352769480448215 13 -0.337432861328125 2 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.56472 0 0 637.4309466971498 484.1845258718803 1121.61547256903 0 0 0 0 0 0 0 0 0 {I|L} 0.56472 - 37 + NaN NaN 123951.8 NaN 17932 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21992 88.31 NaN 603110 35 0 96658 0.262 + 11528 IYSFSLVFF 9 72 561.7951233285085 NaN 0 561.7810668945312 PEAK HCD FTMS 0 0 0 21989 51068.3125 0.6991137154006976 10 -0.270477294921875 3 Unmodified _IYSFSLVFF_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33 13.50788311687929 0.22978952576613207 1 {M(Oxidation (M))|F}V{I|L} 3 7 16.198 0 0 1.4442 0 0 165.10814853456378 594.2248161785164 759.3329647130802 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V{I|L} 1.4442 - 31 + NaN NaN 191219.4 NaN 17933 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21993 88.313 NaN 297610 35 0 61969 0.261 + 35997 YYYVGFAYL 9 56 579.7788599750471 1157.5431670168941 2 579.779052734375 MULTI HCD FTMS 0 0 0 21989 181502.25 0.49362850614890486 5 -0.1503753662109375 4 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 56.04830969593885 0.023109620888794903 1 YYYVG{M(Oxidation (M))|F}AY{I|L} 9 0 + 56.82 0 0 4.9087 4.9087 89.256 0 0 0 2.632192780232785 42.841087759491856 2.632192780232785 21.197887582883936 0 1.4247425010840047 0 0 0 + + YYYVG{M(Oxidation (M))|F}AY{I|L};YYYV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L} 4.9087;3.0774 +;- + 86 NaN NaN 119663.6 NaN 17934 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21994 88.317 NaN 97616 35 0 7457.3 0.263 -1 0 51 458.78776439326293 915.5609758533259 2 458.7877197265625 MULTI HCD FTMS 0 0 0 21989 76141.1171875 0.0584256383712078 14 -0.35800933837890625 5 NaN NaN 1 A 1 -1 0.9691 0 0 0.10585 0 0 237.15400671445713 604.3557833307249 841.509790045182 0 0 0 0 0 0 0 0 0 A 0.10585 - 4 + NaN NaN 100943.5 NaN 17935 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21995 88.32 NaN 265830 35 0 73552 0.261 -1 AAWLTMFDAVL 11 47 627.3152528147127 1252.6159526962253 2 627.315673828125 MULTI HCD FTMS 0 0 0 21989 94072.046875 0.5596451466214435 -11 0.28790283203125 6 Oxidation (M) _AAWLTM(Oxidation (M))FDAVL_ ENSG00000139370|ENST00000266771|SLC15A4;nc|ENSG00000139370|Q8N697-2|SLC15A4 5.296884461304476 0.39569033063702824 1 V{I|L} 2 -1 25.217 0 0 2.0131 0 0 1022.4525868492462 0 1022.4525868492462 0 20.511525224473814 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.0131 + + 11 NaN NaN 138038.5 NaN 17936 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21996 88.323 NaN 169530 35 0 26456 0.264 -1 0 34 404.1209281980568 806.2273034629136 2 404.1208801269531 MULTI HCD FTMS 0 0 0 21989 63895.8359375 0.5103272947864441 9 -0.25048828125 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 102420.8 NaN 17937 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21997 88.327 NaN 137870 35 0 11862 0.262 + 30720 VPILFEETF 9 55 547.7920847160644 NaN 0 547.7765502929688 PEAK HCD FTMS 0 0 0 21989 12742.962890625 0.22084014475183872 4 -0.113739013671875 8 Unmodified _VPILFEETF_ ENSG00000105186|ENST00000306065|ANKRD27 21.74664581756881 0.17567436591797916 1 Q[NS]RDPT 7 8 29.296 0 0 2.679 0 0 130.13432704756002 162.05610071353752 292.19042776109757 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0.3054621874040891 Q[NS]RDPT 2.679 - 171 + NaN NaN 99437.4 NaN 17938 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 21998 88.33 NaN 115420 35 0 12056 0.261 -1 HWILISKSLM 10 50 622.3465761284526 NaN 0 622.346435546875 PEAK HCD FTMS 0 0 0 21989 54560.2890625 1 0 0 9 Oxidation (M) _HWILISKSLM(Oxidation (M))_ ENST00000370008.3_1_1:109351794-109352007:+|nuORF 1.844237919475145 0.33860587697544825 1 {I|L}{I|L}ES[MN]{I|L} 7 -1 13.945 0 0 1.1222 0 0 165.17834447152137 274.08249841861567 439.26084289013704 0 0 0 0 0 0 0 0 0 {I|L}{I|L}ES[MN]{I|L} 1.1222 - 21 + NaN NaN 103090.3 NaN 17939 4057 21989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22000 88.335 NaN 1228500 35 0 181590 0.327 + 17917 MILELDPTF 9 79 539.7781203951506 1077.5416878571011 2 539.7783203125 MULTI HCD FTMS 0 0 0 21999 701155.625 0.38865957658951117 3 -0.08050537109375 1 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 214.70444503029995 9.568545851613971E-24 1 M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 121.5 0 0 11.276 11.276 97.165 0 0 0 68.17963678847569 14.973024840566467 14.973024840566467 18.807196863200843 0 3.079689690656103 2 2.591129063296272 0 + + M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F};M{I|L}{I|L}EEVPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}E{I|L}DT{I|L}M;M{I|L}{I|L}E{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}{I|L}M 11.276;9.5303;9.4325;9.2916;7.9629;7.7824;6.724;6.6602;6.5136;6.3127 +;-;-;+;-;-;-;-;-;- + 1119 + NaN NaN 264096.9 NaN 17940 4058 21999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22001 88.339 NaN 198830 35 0 29776 0.263 + -1 QGASGPCF 8 54 412.1751535033214 822.3357540734428 2 412.1756591796875 MULTI HCD FTMS 0 0 0 21999 378875.78125 0.05211861205275583 20 -0.46553802490234375 2 Carbamidomethyl (C) _QGASGPC(Carbamidomethyl (C))F_ REV__ENST00000308768.9_1_16:29918018-29918189:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.7 0 0 657.2568336406288 0 657.2568336406288 0 3.182503180159344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7 + + 10 + NaN NaN 110837.9 NaN 17941 4058 21999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22002 88.343 NaN 355350 35 0 144490 0.261 -1 0 65 606.3694677211702 1210.7243825091402 2 606.3698120117188 MULTI HCD FTMS 0 0 0 21999 275785.28125 0.3689796467530391 16 -0.379486083984375 3 NaN NaN 1 D 1 -1 5.4846 0 0 0.453 0 0 543.4244899267754 549.2349947565061 1092.6594846832816 0 0 0 0 0 0 0 0 0 D 0.453 - 8 + NaN NaN 148099.1 NaN 17942 4058 21999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22003 88.347 NaN 270020 35 0 24046 0.262 + 33017 YCCPFDNF 8 58 504.6829819501263 1007.3514109670526 2 504.6832275390625 MULTI HCD FTMS 0 0 0 21999 35470.0390625 0.19847091151666482 3 -0.08050537109375 4 Unmodified _YCCPFDNF_ REV__ENST00000216225.8_1_22:41368518-41368620:+|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6866 0 0 842.3054190010355 0 842.3054190010355 0 9.822712330395687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6866 + + 31 + NaN NaN 137582.8 NaN 17943 4058 21999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22004 88.35 NaN 339840 35 0 75576 0.261 + 15377 LPDFTELDL 9 57 531.7710361278848 1061.5275193225696 2 531.7711791992188 MULTI HCD FTMS 0 0 0 21999 165899.609375 0.5081989975950284 -4 0.10938262939453125 5 Unmodified _LPDFTELDL_ ENSG00000132005|ENST00000254325|RFX1 58.678817012210395 0.019429721296335044 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}MTE{I|L}D 8 4 69.691 0 0 6.5651 0 0 0 128.07099309786227 128.07099309786227 55.08655041508895 0 0 0 0 1.9247425010840047 1.5228787452803376 0.3807196863200844 0.2302046884880938 {NN|[MP]|[D{I|L}]|[EV]}{I|L}MTE{I|L}D 6.5651 - 154 NaN NaN 129010.8 NaN 17944 4058 21999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22005 88.353 NaN 63943 35 0 11859 0.262 -1 PPEMVGMI 8 34 453.2096818797742 NaN 0 453.2100830078125 PEAK HCD FTMS 0 0 0 21999 23877.51953125 0.5782895070450783 -10 0.265289306640625 6 2 Oxidation (M) _PPEM(Oxidation (M))VGM(Oxidation (M))I_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90348.7 NaN 17945 4058 21999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22007 88.358 NaN 2825200 35 0 409000 0.327 + 10881 IWDETPLYF 9 101 592.2869259862467 1182.5592990392934 2 592.2869262695312 MULTI HCD FTMS 0 0 0 22006 2271416 0.9797334543362195 -2 0.05678558349609375 1 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 154.46347324262513 4.107785341423729E-06 1 [W{I|L}]DETP{I|L}Y{M(Oxidation (M))|F} 9 0 + 103.84 0 0 8.7809 8.7809 94.113 0 0 0 17.772336398234003 80.12808540534022 17.772336398234003 11.651051905782495 0 2.8807196863200843 1.3010299956639813 1.5189301784845295 0 + + [W{I|L}]DETP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DTEP{I|L}Y{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W{I|L}TP{I|L}Y{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}WP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DETP[Y{M(Oxidation (M))|F}]{I|L};[Y{I|L}]VYT{[QS]|[NT]}Y{M(Oxidation (M))|F};[W{I|L}]DEDV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{I|L}YT{[QS]|[NT]}Y{M(Oxidation (M))|F};{[HG]|PP}[YG]ETP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DTEP[Y{M(Oxidation (M))|F}]{I|L} 8.7809;7.7957;6.6215;6.0748;5.6314;5.618;4.919;4.8469;4.8286;4.6461 +;-;-;-;-;-;-;-;-;- + 4489 NaN NaN 511957.8 NaN 17946 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22008 88.363 NaN 343720 35 0 71133 0.262 -1 0 64 485.7649551238249 969.5153573144498 2 485.764892578125 MULTI HCD FTMS 0 0 0 22006 245624.234375 0.5796726815638585 2 -0.05695343017578125 2 NaN NaN 1 {I|L}{I|L}DAS{I|L} 6 -1 69.826 0 0 7.2021 0 0 339.17668975828053 0 339.17668975828053 0 59.877203139966326 0 0 0 2.305462187404089 0 0.2614393726401688 0 {I|L}{I|L}DAS{I|L} 7.2021 - 469 NaN NaN 134973.1 NaN 17947 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22009 88.367 NaN 539620 35 0 64212 0.261 + 34195 YPDLFQVNL 9 86 554.7873756504689 1107.5601983677377 2 554.78759765625 MULTI HCD FTMS 0 0 0 22006 349426.65625 0.8216461164259151 4 -0.11374664306640625 3 Unmodified _YPDLFQVNL_ ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 63.960520009940105 0.0120409805053046 1 {NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}QVN{I|L} 9 2 + 73.619 0 0 6.6469 6.6469 88.082 0 0 0 8.69325543266271 9.827796776480461 8.69325543266271 8.69325543266271 0 1.8494850021680094 0.958607314841775 0.2614393726401688 0.7059771852360797 {NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}QVN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}QVN{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[AG]VN{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}QVGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}QV{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}[AG]VN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}QVGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}QV{I|L}N;{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[AG]V{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}[AG]V{I|L}N 6.6469;5.862;5.8155;5.8155;5.7596;5.0306;5.0306;4.9747;4.9282;4.1433 -;-;-;-;-;-;-;-;-;- 1289 NaN NaN 160533.7 NaN 17948 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22010 88.37 NaN 559810 35 0 37389 0.261 + 16323 LRGGRERGVAE 11 85 600.3340342714716 1198.6535156097432 2 600.3335571289062 MULTI HCD FTMS 0 0 0 22006 215057.875 0.7393640537360121 9 -0.24036407470703125 4 Unmodified _LRGGRERGVAE_ ENST00000459946.5_2_7:128432196-128432401:+|nuORF 5.296884461304476 0.39569033063702824 1 C(Carbamidomethyl (C))DTT 4 11 10.935 0 0 0.91227 0 0 183.19091434489252 535.2560263568531 718.4469407017457 0 0 0 0 0 0 0 0.3054621874040891 0 C(Carbamidomethyl (C))DTT 0.91227 - 229 + NaN NaN 189356.1 NaN 17949 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22011 88.374 NaN 716720 35 0 48607 0.262 + 5019 FDAVSVLDF 9 74 506.7551187084561 1011.4956844837122 2 507.2673645019531 MULTI HCD FTMS 0 0 0 22006 25713.720703125 0.2342493274690274 -4 0.1163177490234375 5 Unmodified _FDAVSVLDF_ ENST00000502100.2_1_5:25190936-25302336:+|nuORF 16.942295170755138 0.21397866736869717 1 [YG]AD{I|L}{I|L}{I|L}T{M(Oxidation (M))|F} 9 6 + 45.072 0 0 4.456 4.456 86.812 0 0 0 6.719676879436065 8.710149894766701 6.719676879436065 11.760912590556806 0 0 2 0 0 [YG]AD{I|L}{I|L}{I|L}T{M(Oxidation (M))|F};[YG]AD{I|L}[KQ]A{M(Oxidation (M))|F};[YG]AD{I|L}[KA]Q{M(Oxidation (M))|F};[YG]AD{I|L}[KA]GA{M(Oxidation (M))|F};[YG]ADRRQ{M(Oxidation (M))|F};[YG]ADRRGA{M(Oxidation (M))|F};[YQ]D{I|L}{I|L}{I|L}T{M(Oxidation (M))|F};YC{I|L}{I|L}{I|L}DA{[DS]|[MA]|[CV]|TT};YC{I|L}[{I|L}P]AW{M(Oxidation (M))|F};[KT]{[C(Carbamidomethyl (C))E]|[WC]}VKT{M(Oxidation (M))|F} 4.456;3.2932;3.227;3.1035;2.5866;2.4577;2.3099;2.3046;2.2796;2.2229 -;-;-;-;-;-;-;-;-;- 1004 NaN NaN 193763.5 NaN 17950 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22012 88.377 NaN 457170 35 0 57868 0.261 + 4456 EYIKFLDLF 9 73 594.3210968530396 1186.6276407728792 2 595.32421875 MULTI HCD FTMS 0 0 0 22006 101147.0625 0.5693865951370988 2 -0.05695343017578125 6 Unmodified _EYIKFLDLF_ ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1 53.832793166522166 0.026208976789938845 1 Q{I|L}K{M(Oxidation (M))|F}{I|L}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 2 38.95 0 0 3.2824 0 0 164.07001290613545 0 164.07001290613545 0 14.513356515246514 0 0 0 1.0356668758921828 0 1.1505149978319906 0 Q{I|L}K{M(Oxidation (M))|F}{I|L}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3.2824 - 215 + NaN NaN 161272.5 NaN 17951 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22013 88.38 NaN 408240 35 0 96836 0.261 + 16246 LPYTATIEDIL 11 66 624.8400828505966 1247.665612767993 2 624.83935546875 MULTI HCD FTMS 0 0 0 22006 138971.9375 0.38850529445352616 -3 0.0798492431640625 7 Unmodified _LPYTATIEDIL_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 28.494509381512117 0.21104904156558496 1 G{I|L}TGED{I|L}{I|L} 8 6 50.131 0 0 4.018 0 0 431.2172108380875 0 431.2172108380875 0 39.67329742688328 0 0 0 0.7302046884880937 0 0 0 G{I|L}TGED{I|L}{I|L} 4.018 - 370 NaN NaN 144401.6 NaN 17952 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22014 88.384 NaN 454490 35 0 35492 0.261 + 25220 SAQEQTEYLF 10 73 608.281410291879 1214.5482676505578 2 608.281494140625 MULTI HCD FTMS 0 0 0 22006 149857.234375 0.9077600919831268 -2 0.05678558349609375 8 Unmodified _SAQEQTEYLF_ REV__ENST00000311172.11_1_11:72549399-72549570:-|nuORF 20.41453444215458 0.3201613495159799 1 ET{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F} 6 -1 38.492 0 0 3.1692 0 0 414.18892104316564 0 414.18892104316564 0 23.006981269092606 0 0 0 1.3807196863200843 0 0.75 0.3054621874040891 ET{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F} 3.1692 - 188 NaN NaN 170023.5 NaN 17953 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22015 88.387 NaN 114090 35 0 9269.1 0.264 + 19506 NRGQIKLA 8 44 450.2744669199843 898.5343809067687 2 450.2749938964844 MULTI HCD FTMS 0 0 0 22006 103899.3828125 0.05285277017371763 16 -0.3822479248046875 9 Unmodified _NRGQIKLA_ ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13 0.7936320650641473 0.540814922690045 1 P 1 8 6.9897 0 0 0.7779 0 0 493.2938851565718 305.1610506647094 798.4549358212812 0 0 0 0 0 0.5 0 0 0 P 0.7779 - 8 + NaN NaN 110730.1 NaN 17954 4059 22006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22017 88.392 NaN 1529300 35 0 349400 0.327 + 4841 FAADIISVL 9 49 474.77369937741815 947.5328458216363 2 474.77374267578125 MULTI HCD FTMS 0 0 0 22016 542377.9375 0.27936968128463774 3 -0.080230712890625 1 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 71.13359017698441 0.008721403657255008 1 {I|L}{I|L}SV{I|L} 5 4 63.003 0 0 6.6492 0 0 404.17036635566564 0 404.17036635566564 0 35.55584714187489 0 0 0 1.805462187404089 0 0.8494850021680094 0 + {I|L}{I|L}SV{I|L} 6.6492 + + 151 NaN NaN 316822.2 NaN 17955 4060 22016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22018 88.396 NaN 654160 35 0 81707 0.261 + 12781 KYDVLFALF 9 82 558.3103241922371 1114.606095451274 2 558.3107299804688 MULTI HCD FTMS 0 0 0 22016 56870.6015625 0.009589301097497139 22 -0.5211181640625 2 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 70.697 0 0 6.3427 6.3427 90.671 0 0 0 13.133637307377057 46.00711233356285 13.133637307377057 14.392653074926045 0 2.2614393726401687 1.6989700043360187 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT]VAA{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YAA{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[HC][RP]KK{M(Oxidation (M))|F} 6.3427;5.0515;4.8185;4.7774;4.5073;0.69974 -;-;-;-;-;- 1634 NaN NaN 186834.5 NaN 17956 4060 22016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22019 88.4 NaN 250080 35 0 44517 0.261 + 5256 FFDSVQVVF 9 55 544.2765448665174 1086.5385367998347 2 544.2767944335938 MULTI HCD FTMS 0 0 0 22016 56831.35546875 0.09120635070055635 11 -0.26770782470703125 3 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 43.85829265575387 0.04763305254408404 1 [W{I|L}]DT[HA]VV 8 6 57.925 0 0 5.3311 0 0 0 162.05608532618024 162.05608532618024 31.95554701812867 0 0 0 0 1.4247425010840047 1.3979400086720375 0.7302046884880937 0 [W{I|L}]DT[HA]VV 5.3311 - 158 NaN NaN 124292.8 NaN 17957 4060 22016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22020 88.404 NaN 633960 35 0 213470 0.261 + -1 FPMMCTLL 8 52 522.7321612089465 1043.449769484693 2 522.732666015625 MULTI HCD FTMS 0 0 0 22016 109947.359375 0.40931168046118005 -2 0.05706787109375 4 Carbamidomethyl (C),2 Oxidation (M) _FPM(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TLL_ REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF 5.230669730166228 0.5342319408533849 1 VQ{I|L}{I|L} 4 -1 10.718 0 0 1.0272 0 0 572.1531849591812 0 572.1531849591812 0 2.1349281074461857 0 0 0 0.3807196863200844 0 0 0 VQ{I|L}{I|L} 1.0272 - 37 NaN NaN 176089.7 NaN 17958 4060 22016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22021 88.407 NaN 347460 35 0 36990 0.261 + 33749 YLESMEDLF 9 77 573.7544749750843 1145.4943970169686 2 573.7546997070312 MULTI HCD FTMS 0 0 0 22016 83677.2109375 0.50610859159764 -2 0.05706787109375 5 Unmodified _YLESMEDLF_ REV__tr|U7SJH8|U7SJH8_FUSNUATP-dependentzincmetalloproteaseFtsHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsHPE=3SV=1 18.13498045792455 0.20367413111508956 1 E{I|L}{M(Oxidation (M))|F} 3 -1 46.312 0 0 4.043 0 0 738.2909287530283 0 738.2909287530283 0 17.596273996463694 0 0 0 1.3252574989159953 0 0.6861818737241735 0 E{I|L}{M(Oxidation (M))|F} 4.043 - 352 NaN NaN 137974.1 NaN 17959 4060 22016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22022 88.41 NaN 275680 35 0 52118 0.261 + 22561 QSKEPIIVKTI 11 67 628.3831312361264 NaN 0 628.3829956054688 PEAK HCD FTMS 0 0 0 22016 30103.73828125 0.28673360949943116 1 -0.0234375 6 Unmodified _QSKEPIIVKTI_ REV__ENSG00000135678|ENST00000551568|CPM 2.498486711656943 0.3350326561941647 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}CT[PG]{I|L} 7 -1 21.203 0 0 1.6898 0 0 147.29926920877762 339.09287439517817 486.3921436039558 0 0 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}CT[PG]{I|L} 1.6898 - 204 + NaN NaN 127352.9 NaN 17960 4060 22016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22024 88.415 NaN 1849700 35 0 78880 0.327 -1 0 119 589.3431010203685 1176.671649107537 2 589.3436889648438 MULTI HCD FTMS 0 0 0 22023 2283162 0.4989130890821175 12 -0.27593231201171875 1 NaN NaN 1 QK 2 -1 12.959 0 0 1.1013 0 0 634.3780040365233 283.1192672611465 917.4972712976698 0 0 0 0 0 0.5 0 0 0 QK 1.1013 - 295 + NaN NaN 343474.2 NaN 17961 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22025 88.42 NaN 4063400 35 0 596160 0.262 + 8298 GYADIVQLL 9 81 496.2764359399022 990.5383189466045 2 496.27667236328125 MULTI HCD FTMS 0 0 0 22023 2729428.5 0.747545626606584 -1 0.0234375 2 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 181.3275282027936 9.859558525874733E-13 1 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 109.34 0 0 11.039 11.039 95.055 0 0 0 17.134679910804408 16.478174818886373 16.478174818886373 9.47621246364342 0 2.6989700043360187 1.5228787452803376 1.7803695511246982 0.4247425010840047 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]EG{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YG]EG{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L};[Q{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}VQ{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]VQ{I|L}{I|L};[Q{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}V[AG]{I|L}{I|L};[Q{I|L}]V{[YD]|[{M(Oxidation (M))|F}M]}Q{I|L}{I|L} 11.039;10.082;9.6802;8.9;8.7235;7.965;7.4656;6.896;6.5306;6.0447 +;-;-;-;-;-;-;-;-;- + 951 NaN NaN 710523.3 NaN 17962 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22026 88.424 NaN 1013500 35 0 46480 0.261 -1 0 118 597.8562607199011 1193.6979685066021 2 597.8563232421875 MULTI HCD FTMS 0 0 0 22023 1101612.625 0.5754318088669991 6 -0.15673828125 3 NaN NaN 1 D[K{I|L}]AYQV 7 -1 13.165 0 0 1.1029 0 0 105.0785047146447 268.1240633600219 373.2025680746666 0 0 0 0 0 0.6237125054200234 0 0.3494850021680094 0.5 D[K{I|L}]AYQV 1.1029 - 335 + NaN NaN 235488.9 NaN 17963 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22027 88.427 NaN 608930 35 0 86440 0.261 + 6382 FPGFFSPML 9 61 529.7545233061517 1057.4944936791032 2 529.7545166015625 MULTI HCD FTMS 0 0 0 22023 317862.9375 0.8213423061037367 -3 0.08050537109375 4 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 70.71552829651908 0.008856681705782516 1 {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5 4 59.553 0 0 5.6315 0 0 448.211717674025 0 448.211717674025 0 51.48062535455438 0 0 0 1.3807196863200843 0 1.2302046884880937 0 + {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5.6315 + + 107 NaN NaN 179385 NaN 17964 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22028 88.43 NaN 183330 35 0 10153 0.261 + 11970 KFQLTMRWR 9 65 633.353224081122 NaN 0 633.3690795898438 PEAK HCD FTMS 0 0 0 22023 15369.91796875 0.6190486641725043 -1 0.0234375 5 Unmodified _KFQLTMRWR_ ENST00000216442.11_1_14:67826747-67826840:-|nuORF;ENST00000555012.1_3_14:67826571-67826840:-|nuORF 3.5964929083625545 0.27781873954207675 1 C(Carbamidomethyl (C)) 1 9 3.9794 0 0 0.31465 0 0 148.12079893960941 953.5156344049436 1101.636433344553 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.31465 - 10 + NaN NaN 116701.7 NaN 17965 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22029 88.434 NaN 410310 35 0 107640 0.261 + 16687 LWTDELEWN 9 55 603.277981986713 1204.541411040226 2 603.278564453125 MULTI HCD FTMS 0 0 0 22023 291530.0625 0.9860847224528569 2 -0.056793212890625 6 Unmodified _LWTDELEWN_ REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF 30.636539890814138 0.10832830463492794 1 {I|L}WDET{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 8 -1 76.547 0 0 6.3549 0 0 0 183.0559481256469 183.0559481256469 48.258884703078735 0 0 0 0 0.8494850021680094 1.6989700043360187 0.6421590589602533 0.3494850021680094 {I|L}WDET{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 6.3549 - 190 + NaN NaN 161811 NaN 17966 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22030 88.437 NaN 297730 35 0 14936 0.261 -1 0 94 567.3304148038226 1132.646276674445 2 567.3302612304688 MULTI HCD FTMS 0 0 0 22023 96844.8671875 0.0250379657306836 75 -1.8223037719726562 7 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5 0 0 967.5674325355764 0 967.5674325355764 0 -2.4742501084004687 -2.4742501084004687 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5 - 919 + NaN NaN 135865.3 NaN 17967 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22031 88.44 NaN 290690 35 0 29105 0.261 -1 TPFLYDLVM 9 64 557.7779347935821 1113.541316653964 2 558.2664184570312 MULTI HCD FTMS 0 0 0 22023 13570.7724609375 0.3761833293413485 14 -0.32529449462890625 8 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 14.838274106304384 0.23215694253501695 1 [{I|L}T]YQ{I|L}{M(Oxidation (M))|F}A{I|L} 8 -1 33.677 0 0 3.0243 0 0 0 160.9925663705965 160.9925663705965 4.999547704136447 0 0 0 0 0.2742275032520141 1.6989700043360187 0 0 [{I|L}T]YQ{I|L}{M(Oxidation (M))|F}A{I|L} 3.0243 - 227 NaN NaN 120694.2 NaN 17968 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22032 88.444 NaN 173980 35 0 21243 0.261 -1 YVLCPFLLF 9 46 586.3158010230635 1170.617049112927 2 586.3159790039062 MULTI HCD FTMS 0 0 0 22023 75603.78125 0.8386524861109029 -6 0.17327117919921875 9 Carbamidomethyl (C) _YVLC(Carbamidomethyl (C))PFLLF_ HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|145|3|sense 9.347437153973935 0.2795965555214564 1 {I|L}{M(Oxidation (M))|F}[HC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 17.625 0 0 1.5056 0 0 132.09986826874552 0 132.09986826874552 0 12.140012553530969 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}[HC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 1.5056 - 62 + NaN NaN 106447 NaN 17969 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22033 88.447 NaN 150650 35 0 18857 0.262 + 23736 RRCKAPVL 8 43 471.7865705262004 941.5585881192009 2 471.78656005859375 MULTI HCD FTMS 0 0 0 22023 77502.6015625 0.28240525707068354 7 -0.18341064453125 10 Unmodified _RRCKAPVL_ REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF 13.50788311687929 0.4944073034352369 1 M[PA]V{I|L} 5 -1 25.59 0 0 2.7179 0 0 412.2577381818375 0 412.2577381818375 0 10.885292544721404 0 0 0 0.7887254899964358 0 0 0 M[PA]V{I|L} 2.7179 - 20 NaN NaN 102941.6 NaN 17970 4061 22023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22035 88.452 NaN 952780 35 0 78716 0.327 + 28129 TIPDLDWEL 9 78 551.2769790979767 1100.5394052627532 2 551.2771606445312 MULTI HCD FTMS 0 0 0 22034 530612 0.8181875304779913 3 -0.07355499267578125 1 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 96.28474662873226 0.004361282420133734 1 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 65.74 0 0 5.9734 5.9734 86.638 0 0 0 8.05462187404089 16.478174818886373 8.05462187404089 8.05462187404089 0 2.1549471895720984 2 1.360924374808178 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};[VP]ED[{I|L}T]WE{I|L};[{I|L}T]YEVSYN{I|L};[{I|L}T]YE[QA]YT{I|L};[{I|L}T]YEVSYGG{I|L};[VP]EDWE{I|L}T{I|L};[VP]EDW[{I|L}T]E{I|L};{[QN]|[E{I|L}]|[KN]}[YT]VSYN{I|L} 5.9734;5.2415;4.3074;3.7419;3.7098;3.3975;2.8731;2.8345;2.3413;2.1828 +;-;-;-;-;-;-;-;-;- + 1054 NaN NaN 224668.2 NaN 17971 4062 22034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22036 88.456 NaN 127980 35 0 7857.7 0.261 + 15296 LPAKQAELTRR 11 61 641.8825694802825 1281.750586027365 2 641.8828125 MULTI HCD FTMS 0 0 0 22034 118123.734375 0.5101149937021041 -8 0.22652435302734375 2 Unmodified _LPAKQAELTRR_ ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP 1.1933415558491238 0.4136870758253112 1 D 1 11 6.5938 0 0 0.51444 0 0 105.07952847052077 1058.5988253229127 1163.6783537934334 0 0 0 0 0 0 0 0.3494850021680094 0 D 0.51444 - 12 + NaN NaN 101600.9 NaN 17972 4062 22034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22037 88.461 NaN 367110 35 0 80452 0.264 + 6861 FPTLEITL 8 38 467.26816253974033 932.5217721462807 2 467.2684326171875 MULTI HCD FTMS 0 0 0 22034 298698.375 0.4500398608364316 -6 0.17343902587890625 3 Unmodified _FPTLEITL_ ENSG00000183508|ENST00000369448|TENT5C 46.92087301778293 0.1468278106890452 1 {I|L}T{I|L} 3 5 46.682 0 0 5.006 0 0 587.2954901477721 0 587.2954901477721 0 28.723637474483468 0 0 0 1.5 0 0.8494850021680094 0 + {I|L}T{I|L} 5.006 + + 23 + NaN NaN 143154.5 NaN 17973 4062 22034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22038 88.464 NaN 193900 35 0 21380 0.261 + 7243 FSVGVAWAPLD 11 56 581.3005119350742 1160.5864709369482 2 581.3011474609375 MULTI HCD FTMS 0 0 0 22034 49125.0625 0.6272509256877182 3 -0.07355499267578125 4 Unmodified _FSVGVAWAPLD_ ENSG00000100473|ENST00000396618|COCH 15.248480904072842 0.3242218977034194 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VRA 5 7 46.695 0 0 4.0234 0 0 0 597.2675263681095 597.2675263681095 14.245382673615588 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VRA 4.0234 - 219 NaN NaN 113293.9 NaN 17974 4062 22034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22039 88.467 NaN 207700 35 0 34183 0.261 + 33343 YGADISGSLF 10 59 515.2496137764642 1028.4846746197284 2 515.2490844726562 MULTI HCD FTMS 0 0 0 22034 84464.765625 1 0 0 5 Unmodified _YGADISGSLF_ ENSG00000186280|ENST00000335080|KDM4D;ENSG00000235268|ENST00000450979|KDM4E;ENSG00000255855|ENST00000545950|KDM4F 14.838274106304384 0.3723198072575719 1 [YG]A{M(Oxidation (M))|F} 4 6 27.452 0 0 2.6692 0 0 0 587.2839371563942 587.2839371563942 2.759621790487685 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 [YG]A{M(Oxidation (M))|F} 2.6692 - 85 + NaN NaN 119960.3 NaN 17975 4062 22034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22041 88.472 NaN 1771800 35 0 382740 0.326 -1 0 76 519.8181292207414 1037.6217055082827 2 519.8182983398438 MULTI HCD FTMS 0 0 0 22040 312063.875 0.5835614059221462 1 -0.03011322021484375 1 NaN NaN 1 Q{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}VA{M(Oxidation (M))|F} 8 -1 22.281 0 0 2.1474 0 0 130.13673343972647 0 130.13673343972647 0 18.213436626437527 0 0 0 0 0 0 0 Q{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}VA{M(Oxidation (M))|F} 2.1474 - 304 + NaN NaN 359529.6 NaN 17976 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22042 88.477 NaN 313420 35 0 44165 0.262 + -1 QGASGPCF 8 57 412.1751535033214 822.3357540734428 2 412.1756591796875 MULTI HCD FTMS 0 0 0 22040 331730.03125 0.04563318549400501 25 -0.5995101928710938 2 Carbamidomethyl (C) _QGASGPC(Carbamidomethyl (C))F_ REV__ENST00000308768.9_1_16:29918018-29918189:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 10.797 0 0 1.313 0 0 155.0935830104275 551.1347258736428 706.2283088840702 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 1.313 - 10 + NaN NaN 138236.1 NaN 17977 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22043 88.481 NaN 573560 35 0 75344 0.261 + 17918 MILELDPTF 9 67 539.7781203951506 1077.5416878571011 2 539.7783813476562 MULTI HCD FTMS 0 0 0 22040 226687.84375 0.12565598595870106 8 -0.18747711181640625 3 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 139.54400939418784 2.61670173137287E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 9 2 + 89.836 0 0 8.3371 8.3371 90.477 0 0 0 19.493559221610965 58.499934467764874 19.493559221610965 7.474250108400469 0 2.579689690656103 1.5228787452803376 0.6237125054200234 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}SE{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}P{M(Oxidation (M))|F} 8.3371;7.6435;6.1531;5.4594;4.9918 -;-;-;-;- 451 NaN NaN 166593.5 NaN 17978 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22044 88.484 NaN 766620 35 0 84021 0.261 + 2837 DYLFKVVLI 9 86 555.3337877393362 1108.6530225454724 2 555.3341064453125 MULTI HCD FTMS 0 0 0 22040 297453.0625 0.4772099787517807 -3 0.080230712890625 4 Unmodified _DYLFKVVLI_ ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B 82.5293158979368 0.005033931517079822 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 9 0 + 102.95 0 0 9.2858 9.2858 97.303 0 0 0 27.646205135278223 16.478174818886373 16.478174818886373 32.028937514676485 0 2.5356668758921828 2 0.899649864804614 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KVV{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KV{I|L}{I|L}V;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}VV{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KV{I|L}{I|L}V;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}{I|L}V 9.2858;6.3968;6.1846;3.7265;3.2956;0.62537 +;-;-;-;-;- + 868 NaN NaN 196698.7 NaN 17979 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22045 88.487 NaN 377990 35 0 108790 0.261 + 33220 YFEELITML 9 54 587.7891259224732 1173.5636989117463 2 587.78955078125 MULTI HCD FTMS 0 0 0 22040 166626.453125 0.7721567930922402 1 -0.03011322021484375 5 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 52.268347100219714 0.028397529699942435 1 {I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 5 4 57.206 0 0 4.8746 0 0 568.2182484357437 0 568.2182484357437 0 46.74865027867405 0 0 0 1.8494850021680094 0 0.4247425010840047 0 + {I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 4.8746 + + 84 NaN NaN 130066.5 NaN 17980 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22046 88.491 NaN 369140 35 0 26671 0.261 -1 0 85 619.8695022068749 1237.7244514805498 2 619.8692016601562 MULTI HCD FTMS 0 0 0 22040 184631.078125 0.2782982509144491 19 -0.440887451171875 6 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.56472 0 0 637.4354700656731 484.1838367838999 1121.6193068495731 0 0 0 0 0 0 0 0 0 {I|L} 0.56472 - 53 + NaN NaN 153002.2 NaN 17981 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22047 88.494 NaN 396750 35 0 53168 0.261 + 11529 IYSFSLVFF 9 64 561.7951233285085 NaN 0 561.7811279296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IYSFSLVFF_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33 13.50788311687929 0.22978952576613207 1 {M(Oxidation (M))|F}V{I|L} 3 7 16.198 0 0 1.4442 0 0 165.1083923992391 594.2229708307249 759.3313632299639 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V{I|L} 1.4442 - 40 + NaN NaN 138421.7 NaN 17982 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22048 88.497 NaN 340760 35 0 93684 0.261 -1 AAWLTMFDAVL 11 47 627.3152528147127 1252.6159526962253 2 627.3153076171875 MULTI HCD FTMS 0 0 0 22040 93618.625 0.5569476890860193 -5 0.137298583984375 8 Oxidation (M) _AAWLTM(Oxidation (M))FDAVL_ ENSG00000139370|ENST00000266771|SLC15A4;nc|ENSG00000139370|Q8N697-2|SLC15A4 5.296884461304476 0.39569033063702824 1 V{I|L} 2 -1 25.217 0 0 2.0131 0 0 1022.4521703817437 0 1022.4521703817437 0 19.886831541432315 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.0131 + + 8 NaN NaN 129719.2 NaN 17983 4063 22040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22050 88.502 NaN 1453300 35 0 220540 0.327 + 10882 IWDETPLYF 9 77 592.2869259862467 1182.5592990392934 2 592.286865234375 MULTI HCD FTMS 0 0 0 22049 1072535.75 0.46261854070174196 3 -0.06983184814453125 1 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 117.59872219059416 0.0017018906413822257 1 [W{I|L}]DET[{I|L}P]Y{M(Oxidation (M))|F} 9 0 + 75.454 0 0 6.3806 6.3806 92.499 0 0 0 4.762036441594191 56.72090214727007 4.762036441594191 30.24735947860492 0 2.555462187404089 0 1.579689690656103 0 + + [W{I|L}]DET[{I|L}P]Y{M(Oxidation (M))|F};{[HG]|PP}[YG]ET[{I|L}P]Y{M(Oxidation (M))|F};[NP]T{I|L}{I|L}T{[QS]|[NT]}Y{M(Oxidation (M))|F};[W{I|L}]DE[DV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[HG]|PP}[YG]ETY[{I|L}P]{M(Oxidation (M))|F};{[HG]|PP}[YG]E{I|L}[TP]Y{M(Oxidation (M))|F};[W{I|L}]D[SG]RR{M(Oxidation (M))|F}{M(Oxidation (M))|F};[W{I|L}]DE[DV]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L};{[HG]|PP}[YG]E{I|L}[DV]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS]{[ET]|[MV]}ETY[TA][KG] 6.3806;3.8228;3.7926;3.6048;2.8909;2.6854;1.9457;1.9235;1.6715;1.0783 +;-;-;-;-;-;-;-;-;- + 1020 NaN NaN 312680.9 NaN 17984 4064 22049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22051 88.507 NaN 423570 35 0 185510 0.261 -1 0 70 606.3694677211702 1210.7243825091402 2 606.3698120117188 MULTI HCD FTMS 0 0 0 22049 482314.96875 0.6453005975752308 22 -0.5231399536132812 2 NaN NaN 1 D 1 -1 7.7866 0 0 0.64314 0 0 122.10558260264686 970.5438936822874 1092.6494762849343 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.64314 - 14 + NaN NaN 140559.5 NaN 17985 4064 22049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22052 88.511 NaN 102800 35 0 13028 0.263 + 4945 FAQHQARL 8 41 485.7649551238249 969.5153573144498 2 485.764892578125 MULTI HCD FTMS 0 0 0 22049 52697.15234375 0.12436516977898766 7 -0.1573638916015625 3 Unmodified _FAQHQARL_ REV__ENSG00000215910|ENST00000688073|C1orf167;REV__nc|nan|Q5SNV9-2|C1orf167;REV__nc|nan|Q5SNV9-3|C1orf167 13.50788311687929 0.4944073034352369 1 AS{I|L} 3 -1 30.445 0 0 3.1403 0 0 680.3732166974625 0 680.3732166974625 0 22.346368802282015 0 0 0 0.4247425010840047 0 0 0 AS{I|L} 3.1403 - 19 NaN NaN 98600.6 NaN 17986 4064 22049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22053 88.514 NaN 65524 35 0 4954.5 0.261 + 23758 RRHRRNKQ 8 50 575.8430775386402 1149.6716021440802 2 575.8432006835938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RRHRRNKQ_ REV__ENSG00000225614|ENST00000565624|ZNF469 0.6903765706972694 0.5409681170271811 1 {I|L}YD 3 -1 7.167 0 0 0.62339 0 0 166.25175458724271 589.2074068658811 755.4591614531239 0 0 0 0 0 0 0 0 0 {I|L}YD 0.62339 - 43 + NaN NaN 97911.7 NaN 17987 4064 22049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22054 88.517 NaN 67601 35 0 5295.4 0.265 + 20514 PDMFFIFPLF 10 41 425.2147218427084 NaN 0 425.2144775390625 PEAK HCD FTMS 0 0 0 22049 21545.9296875 0.46550444674993846 -49 1.325775146484375 5 Unmodified _PDMFFIFPLF_ tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1 1.844237919475145 0.33860587697544825 1 N 1 10 2.2185 0 0 0.26149 0 0 442.2380546699887 289.10544763736567 731.3435023073544 0 0 0 0 0 0 0 0 0 N 0.26149 - 3 + NaN NaN 86572.5 NaN 17988 4064 22049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22055 88.521 NaN 74044 35 0 5886.2 0.261 -1 0 38 477.2306230206312 476.2233465540312 1 477.2303161621094 MULTI HCD FTMS 0 0 0 22049 90198.875 0.6183080503795388 -5 0.14385986328125 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 86106.6 NaN 17989 4064 22049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22057 88.526 NaN 415300 35 0 87478 0.326 + 4842 FAADIISVL 9 42 474.77369937741815 947.5328458216363 2 474.7735900878906 MULTI HCD FTMS 0 0 0 22056 181439.015625 0.09345616121738848 8 -0.165740966796875 1 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 37.97399986684836 0.07464525285885698 1 {I|L}SV{I|L} 4 5 52.423 0 0 5.5326 0 0 517.2528286353919 0 517.2528286353919 0 45.43305028184122 0 0 0 1.3494850021680094 0 0.8494850021680094 0 + {I|L}SV{I|L} 5.5326 + + 49 NaN NaN 142711.5 NaN 17990 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22058 88.53 NaN 383800 35 0 28260 0.261 + 33739 YLEKKRLCF 9 83 600.3340342714716 1198.6535156097432 2 600.3341674804688 MULTI HCD FTMS 0 0 0 22056 127659.828125 0.43889156824293263 15 -0.33118438720703125 2 Unmodified _YLEKKRLCF_ ENSG00000039139|ENST00000265104|DNAH5 3.944395688203298 0.32111559684428237 1 YY[{I|L}V]TTDC(Carbamidomethyl (C)) 8 7 19.385 0 0 1.6173 0 0 0 180.16286493117835 180.16286493117835 12.614393726401689 0 0 0 0 0 2 0 0 YY[{I|L}V]TTDC(Carbamidomethyl (C)) 1.6173 - 337 NaN NaN 145044.2 NaN 17991 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22059 88.534 NaN 178020 35 0 39257 0.261 + 16247 LPYTATIEDIL 11 53 624.8400828505966 1247.665612767993 2 624.83984375 MULTI HCD FTMS 0 0 0 22056 98369.6640625 0.27499893855834034 3 -0.07321929931640625 3 Unmodified _LPYTATIEDIL_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 19.361941925380144 0.2883811769592959 1 {I|L}ED{I|L}{I|L} 5 6 38.276 0 0 3.0678 0 0 646.3322010724625 0 646.3322010724625 0 27.81865655543953 0 0 0 1.1109243748081783 0 0 0 + {I|L}ED{I|L}{I|L} 3.0678 + + 79 NaN NaN 99454.9 NaN 17992 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22060 88.537 NaN 177750 35 0 34099 0.262 + 15378 LPDFTELDL 9 52 531.7710361278848 1061.5275193225696 2 531.7706909179688 MULTI HCD FTMS 0 0 0 22056 57999.03125 0.17766798640319417 3 -0.07321929931640625 4 Unmodified _LPDFTELDL_ ENSG00000132005|ENST00000254325|RFX1 41.8396318013385 0.056899836730939755 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}MTE{I|L}D 8 4 59.563 0 0 5.611 0 0 0 128.07076274126044 128.07076274126044 46.27487628284341 0 0 0 0 2 1.3979400086720375 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}MTE{I|L}D 5.611 - 82 NaN NaN 104115.8 NaN 17993 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22061 88.54 NaN 158660 35 0 17527 0.261 + 25591 SFVPYTWNF 9 53 580.773748964752 1159.532944996304 2 580.7744140625 MULTI HCD FTMS 0 0 0 22056 31541.91796875 0.573049821653148 1 -0.02655792236328125 5 Unmodified _SFVPYTWNF_ ENSG00000138688|ENST00000679879|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1 31.26834338654808 0.10542797264966089 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TWN{M(Oxidation (M))|F} 9 0 + 53.043 0 0 4.5745 4.5745 85.54 0 0 0 24.137342758552688 48.43880628309982 24.137342758552688 9.208187539523749 0 1.274227503252014 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TWN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[DA]|[EG]}N{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TWGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KC]KT{[DA]|[EG]}N{M(Oxidation (M))|F} 4.5745;3.7804;3.7804;2.7233 +;-;-;- + 191 NaN NaN 121712 NaN 17994 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22062 88.544 NaN 168200 35 0 29995 0.264 -1 0 57 404.1209281980568 806.2273034629136 2 404.12152099609375 MULTI HCD FTMS 0 0 0 22056 19508.048828125 0.1558081154890422 17 -0.38748931884765625 6 NaN NaN 1 R 1 -1 5.3567 0 0 0.66441 0 0 257.9825047342011 389.1323641412719 647.114868875473 0 0 0 0 0 0.4247425010840047 0 0 0 R 0.66441 - 4 + NaN NaN 100641.4 NaN 17995 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22063 88.547 NaN 115680 35 0 17854 0.261 + 23653 RPVTRASI 8 45 450.2744669199843 898.5343809067687 2 450.2756042480469 MULTI HCD FTMS 0 0 0 22056 8732.30859375 0.004442054290392979 22 -0.5129852294921875 7 Unmodified _RPVTRASI_ REV__ENST00000433473.7_1_1:40539414-40539546:-|nuORF 0.6014990680409731 0.5410999795511968 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114367.3 NaN 17996 4065 22056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22065 88.552 NaN 2227900 35 0 213160 0.326 -1 0 119 589.3431010203685 1176.671649107537 2 589.3433837890625 MULTI HCD FTMS 0 0 0 22064 2158922.25 0.4717644077974386 17 -0.39075469970703125 1 NaN NaN 1 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 -1 16.412 0 0 1.3948 0 0 546.3254352081034 0 546.3254352081034 0 -1.951812870420536 -1.951812870420536 0 0 0.5994850021680094 0 0.5010912013506126 0 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.3948 - 1465 + NaN NaN 432572.2 NaN 17997 4066 22064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22066 88.557 NaN 404940 35 0 57785 0.261 + 12782 KYDVLFALF 9 73 558.3103241922371 1114.606095451274 2 558.310791015625 MULTI HCD FTMS 0 0 0 22064 133224.234375 0.022463755645373625 28 -0.6570663452148438 2 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 70.824 0 0 6.3542 6.3542 90.319 0 0 0 13.133637307377057 42.88241865052135 13.133637307377057 12.781512503836439 0 2.274227503252014 1.5228787452803376 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]KT[VP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.3542;5.2075;4.9686;4.8299;3.8219;3.6832;2.0914 -;-;-;-;-;-;- 1199 NaN NaN 145599.4 NaN 17998 4066 22064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22067 88.561 NaN 204530 35 0 23289 0.261 -1 QRGVRGMDL 9 48 524.2718729737934 NaN 0 524.2623901367188 PEAK HCD FTMS 0 0 0 22064 12814.5078125 0.7007211490966119 -4 0.1001129150390625 3 Oxidation (M) _QRGVRGM(Oxidation (M))DL_ ENST00000475470.1_1_3:9882101-9883869:-|nuORF 6.723162845929126 0.26266733336404485 1 TGD 3 -1 14.213 0 0 1.3581 0 0 495.3057565903617 275.10627161197505 770.4120282023367 0 0 0 0 0 0.3494850021680094 0 0.3807196863200844 0 TGD 1.3581 - 22 + NaN NaN 129945.1 NaN 17999 4066 22064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22068 88.564 NaN 604880 35 0 58773 0.261 + 4457 EYIKFLDLF 9 71 594.3210968530396 1186.6276407728792 2 594.8132934570312 MULTI HCD FTMS 0 0 0 22064 21773.837890625 0.04807349486328543 9 -0.18854522705078125 4 Unmodified _EYIKFLDLF_ ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1 56.17704186161178 0.022929533404884107 1 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L} 9 6 + 65.166 0 0 5.4917 5.4917 84.832 0 0 0 4.697049078678361 35.53395642852614 4.697049078678361 5.796896906561031 0 0.8807196863200843 1.2218487496163564 0.3494850021680094 0.7614393726401688 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}ED{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}EN[Y{I|L}]{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[Y{I|L}]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}EGG[Y{I|L}]{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[Y{I|L}]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}EGS[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGS[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}EN{M(Oxidation (M))|F}[Y{I|L}]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}G[Y{I|L}]{M(Oxidation (M))|F}{I|L} 5.4917;5.0031;4.821;4.3324;3.887;3.7193;3.5902;3.4226;3.2961;3.0105 -;-;-;-;-;-;-;-;-;- 1146 NaN NaN 176743.5 NaN 18000 4066 22064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22069 88.567 NaN 80060 35 0 12365 0.261 + 34086 YNLVLMLQLH 10 39 622.3471065222012 1242.6796601112023 2 622.3463745117188 MULTI HCD FTMS 0 0 0 22064 15526.8447265625 0.3118459409573107 -2 0.04984283447265625 5 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 1 [YN]{I|L} 3 -1 25.686 0 0 2.067 0 0 0 849.4668359747367 849.4668359747367 14.71726222832956 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L} 2.067 + + 15 NaN NaN 103971.3 NaN 18001 4066 22064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22071 88.572 NaN 1001700 35 0 42470 0.326 -1 0 109 597.8562607199011 1193.6979685066021 2 597.8563232421875 MULTI HCD FTMS 0 0 0 22070 1100669.25 0.5749390331213599 12 -0.264739990234375 1 NaN NaN 1 W 1 -1 12.474 0 0 1.045 0 0 989.6081532983975 0 989.6081532983975 0 1.6330312844383599 0 0 0 0 0 0 0 W 1.045 - 324 + NaN NaN 243730.3 NaN 18002 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22072 88.576 NaN 994400 35 0 144960 0.262 + 8299 GYADIVQLL 9 51 496.2764359399022 990.5383189466045 2 496.27667236328125 MULTI HCD FTMS 0 0 0 22070 594773.6875 0.16289874195689538 5 -0.09720611572265625 2 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 103.35351024395868 0.004027461563756449 1 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 103.68 0 0 10.467 10.467 94.093 0 0 0 17.998037644757048 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6989700043360187 1.6989700043360187 1.110924374808178 0 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]VQ{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}Q{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}[{M(Oxidation (M))|F}V]A{[DS]|[MA]|[CV]|TT} 10.467;9.5377;7.9732;7.0381;5.5265;4.5914;3.9593;3.0242;0.5324 +;-;-;-;-;-;-;-;- + 242 NaN NaN 235708 NaN 18003 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22073 88.58 NaN 387330 35 0 15154 0.261 -1 0 82 633.369248147757 1264.723943362314 2 633.3692626953125 MULTI HCD FTMS 0 0 0 22070 567092.25 1 0 0 3 NaN NaN 1 {[HG]|PP}N[WR]R 6 -1 12.553 0 0 0.99257 0 0 0 455.24970422916255 455.24970422916255 4.326440444176216 0 0 0 0 1.066901560044258 0 0 0 {[HG]|PP}N[WR]R 0.99257 - 62 + NaN NaN 148192.3 NaN 18004 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22074 88.584 NaN 556900 35 0 72171 0.262 + 6383 FPGFFSPML 9 62 529.7545233061517 1057.4944936791032 2 529.7545166015625 MULTI HCD FTMS 0 0 0 22070 318705.34375 0.823519042710694 3 -0.06695556640625 4 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 93.88341677533236 0.004424206486747196 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 6 3 67.925 0 0 6.4232 0 0 301.14192397285314 0 301.14192397285314 0 43.143265708843046 0 0 0 1.8807196863200843 0 1.274227503252014 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 6.4232 + + 242 NaN NaN 166549.1 NaN 18005 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22075 88.587 NaN 309120 35 0 27827 0.261 + -1 MADEYEIIF 9 66 573.7544749750843 1145.4943970169686 2 573.7547607421875 MULTI HCD FTMS 0 0 0 22070 93356.75 0.5646537776447142 5 -0.09720611572265625 5 Oxidation (M) _M(Oxidation (M))ADEYEIIF_ REV__ENSG00000091129|ENST00000379028|NRCAM;REV__nc|ENSG00000091129|Q92823-2|NRCAM;REV__nc|ENSG00000091129|Q92823-3|NRCAM;REV__nc|ENSG00000091129|Q92823-4|NRCAM;REV__nc|ENSG00000091129|Q92823-5|NRCAM;REV__nc|ENSG00000091129|Q92823-6|NRCAM;REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant 23.1484247019978 0.1603590852062899 1 {I|L}E{I|L}{M(Oxidation (M))|F} 4 -1 48.686 0 0 4.2502 0 0 625.2020130841812 0 625.2020130841812 0 39.221675119240516 0 0 0 1.25 0 0.7742275032520141 0 {I|L}E{I|L}{M(Oxidation (M))|F} 4.2502 - 35 NaN NaN 130482.7 NaN 18006 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22076 88.59 NaN 215590 35 0 32138 0.262 + -1 WLWYPMFF 8 66 603.277981986713 1204.541411040226 2 603.2777099609375 MULTI HCD FTMS 0 0 0 22070 71102.4296875 0.24050013587920185 8 -0.16855621337890625 6 Oxidation (M) _WLWYPM(Oxidation (M))FF_ REV__ENSG00000183722|ENST00000379589|LHFPL6 11.114462752807354 0.5120171699125776 1 {I|L}WD 3 -1 47.848 0 0 3.9723 0 0 0 787.3278902643186 787.3278902643186 25.017346757967545 0 0 0 0 0.8807196863200843 1.5228787452803376 0 0 {I|L}WD 3.9723 - 209 + NaN NaN 113086.9 NaN 18007 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22077 88.594 NaN 97418 35 0 32138 0.263 -1 0 43 509.3949019234616 508.3876254568616 1 512.4036865234375 MULTI HCD FTMS 0 0 0 22070 22478.931640625 0.7290473398182654 -2 0.04654693603515625 7 NaN NaN 1 A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3 -1 7.4473 0 0 1.4649 0 0 162.2244002144772 0 162.2244002144772 0 7.447274948966937 0 0 0 0 0 0 0 A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.4649 - 7 + NaN NaN 109286 NaN 18008 4067 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22079 88.599 NaN 556400 35 0 47996 0.327 + 28130 TIPDLDWEL 9 74 551.2769790979767 1100.5394052627532 2 551.2772216796875 MULTI HCD FTMS 0 0 0 22078 382661.9375 0.5900530437514576 9 -0.1851654052734375 1 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 96.28474662873226 0.004361282420133734 1 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 63.61 0 0 5.7799 5.7799 86.344 0 0 0 8.05462187404089 16.478174818886373 8.05462187404089 8.05462187404089 0 2.1435078169319297 2 1.4604093769761874 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};[VP]ED[{I|L}T]WE{I|L};[{I|L}T]YE[QA]YT{I|L};[{I|L}T][DN][YV]YT{I|L};[VP]ED[WE]{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}[NS][YV]YT{I|L};{[QN]|[E{I|L}]|[KN]}[YT][QA]YT{I|L};[{I|L}T]YE[PA][DP][VP] 5.7799;5.048;4.5009;3.8954;3.8056;2.7624;2.1905;2.0305;1.917;1.9125 +;-;-;-;-;-;-;-;-;- + 613 NaN NaN 158098 NaN 18009 4068 22078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22080 88.603 NaN 732450 35 0 163750 0.261 + 6862 FPTLEITL 8 47 467.26816253974033 932.5217721462807 2 467.2681884765625 MULTI HCD FTMS 0 0 0 22078 663715.375 1 0 0 2 Unmodified _FPTLEITL_ ENSG00000183508|ENST00000369448|TENT5C 81.86404211737425 0.01600015972391505 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}E{I|L}T{I|L} 8 0 + 64.831 0 0 6.9522 6.9522 91.843 0 0 0 10.389180660303694 46.871987629411294 10.389180660303694 14.463950151760656 0 1.774227503252014 1.2218487496163564 0.8494850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}E{I|L}T{I|L};[YV][VP]E{I|L}T{I|L} 6.9522;5.4011 +;- + 126 NaN NaN 211940.8 NaN 18010 4068 22078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22081 88.607 NaN 171070 35 0 10314 0.261 + 31114 VTLTNHKKSVR 11 74 641.8825694802825 1281.750586027365 2 641.88232421875 MULTI HCD FTMS 0 0 0 22078 179270.4375 0.7741758130162903 -2 0.046661376953125 3 Unmodified _VTLTNHKKSVR_ ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 2.735195868890462 0.4069250265843076 1 A 1 11 6.5938 0 0 0.51444 0 0 193.13506798819327 1014.5711763971311 1207.7062443853245 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.51444 - 25 + NaN NaN 109181.6 NaN 18011 4068 22078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22082 88.61 NaN 69039 35 0 14625 0.264 + 1659 CCPPFPLE 8 38 453.19875409434843 NaN 0 453.2099609375 PEAK HCD FTMS 0 0 0 22078 4920.94091796875 0.8684979019812319 -1 0.02667236328125 4 Unmodified _CCPPFPLE_ REV__ENST00000439955.1_1_2:118593974-118594413:+|nuORF 0.7936320650641473 0.38822285293237185 1 S 1 -1 9.732 0 0 1.0761 0 0 530.486946421718 283.8498629205688 814.3368093422869 0 0 0 0 0 0 0 0.4247425010840047 0 S 1.0761 - 1 + NaN NaN 92345.4 NaN 18012 4068 22078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22084 88.615 NaN 531010 35 0 64946 0.325 + 2838 DYLFKVVLI 9 80 555.3337877393362 1108.6530225454724 2 555.3340454101562 MULTI HCD FTMS 0 0 0 22083 238005.21875 0.381836597774146 3 -0.05385589599609375 1 Unmodified _DYLFKVVLI_ ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B 72.96794272382148 0.008127836904478181 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 9 0 + 102.64 0 0 9.2584 9.2584 97.088 0 0 0 19.5609971201948 16.478174818886373 16.478174818886373 29.018637558036673 0 2.7302046884880937 2 0.6747425010840047 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KVV{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KV{I|L}{I|L}V;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}VV{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KV{I|L}{I|L}V;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}VV{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}{I|L}V 9.2584;6.6409;6.2561;3.8475;3.6386;1.1029;0.84524 +;-;-;-;-;-;- + 542 NaN NaN 156931.6 NaN 18013 4069 22083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22085 88.62 NaN 688170 35 0 53788 0.263 -1 0 76 611.3720523561143 610.3647758895142 1 611.3562622070312 MULTI HCD FTMS 0 0 0 22083 35846.3125 0.7611589824357038 -3 0.0633392333984375 2 NaN NaN 1 M 1 -1 0.9691 0 0 0.15877 0 0 54.032025500645496 422.2694491022094 476.3014746028549 0 0 0 0 0 0 0 0 0 M 0.15877 - 3 + NaN NaN 188885 NaN 18014 4069 22083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22086 88.624 NaN 1148400 35 0 157200 0.262 -1 0 76 519.8181292207414 1037.6217055082827 2 519.8182983398438 MULTI HCD FTMS 0 0 0 22083 195638.15625 0.3658445807393327 7 -0.1324615478515625 3 NaN NaN 1 Q{I|L}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[Q{I|L}] 7 -1 16.471 0 0 1.5873 0 0 130.13810803394807 0 130.13810803394807 0 0.9859945921845537 0 0 0 0 0 0 0.3494850021680094 Q{I|L}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[Q{I|L}] 1.5873 - 184 + NaN NaN 251971.2 NaN 18015 4069 22083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22087 88.627 NaN 625550 35 0 72710 0.261 + 32309 VYVDFEGINF 10 78 601.7900346758779 1201.5655164185557 2 601.7903442382812 MULTI HCD FTMS 0 0 0 22083 166792.84375 0.15548277410229142 -6 0.1432952880859375 4 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 136.39213081522345 6.942186105618134E-06 1 [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 10 0 + 108.68 0 0 9.0452 9.0452 94.667 0 0 0 10.996075289514096 10.996075289514096 10.996075289514096 12.4171144746592 0 3.1549471895720984 1.3979400086720375 1.079689690656103 0.3252574989159953 + + [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}{M(Oxidation (M))|F}N;[YV]VDE{M(Oxidation (M))|F}G{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EVAN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PN{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}GG{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}{M(Oxidation (M))|F}N;[YG]KTE{M(Oxidation (M))|F}DVP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}T]{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 9.0452;8.0117;7.9825;7.9777;7.5886;6.9656;6.9443;6.9151;6.5897;5.9831 +;-;-;-;-;-;-;-;-;- + 2543 NaN NaN 172549 NaN 18016 4069 22083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22088 88.631 NaN 211390 35 0 26883 0.261 + 17919 MILELDPTF 9 52 539.7781203951506 1077.5416878571011 2 539.7783813476562 MULTI HCD FTMS 0 0 0 22083 72533.7578125 0.040206394407593035 14 -0.32741546630859375 5 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 43.85829265575387 0.04763305254408404 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 9 2 + 66.22 0 0 6.1455 6.1455 93.422 0 0 0 14.141974908773918 45.71887425979199 14.141974908773918 66.22031878693626 0 2.0356668758921828 1.3979400086720375 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 6.1455 - 68 NaN NaN 128404.5 NaN 18017 4069 22083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22089 88.634 NaN 100340 35 0 8105.3 0.262 + 847 AWHRRRQKE 9 39 422.901517620931 NaN 0 422.9160461425781 PEAK HCD FTMS 0 0 0 22083 8173.63427734375 0.25888869161604505 2 -0.04418182373046875 6 Unmodified _AWHRRRQKE_ ENSG00000157890|ENST00000395614|MEGF11;ENST00000478590.1_1_15:66206003-66207886:-|nuORF;ENST00000490495.5_1_15:66202139-66208942:-|nuORF;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72-4|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11 1.1933415558491238 0.28946407562688115 1 {M(Oxidation (M))|F} 1 9 5.4846 0 0 0.64999 0 0 439.6299262557307 254.09351526431877 693.7234415200495 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.64999 - 3 + NaN NaN 114651.4 NaN 18018 4069 22083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22091 88.639 NaN 198180 35 0 17249 0.326 -1 0 78 619.8695022068749 1237.7244514805498 2 619.869384765625 MULTI HCD FTMS 0 0 0 22090 182106.8125 0.2744933730173198 26 -0.6193466186523438 1 NaN NaN 1 D 1 -1 10.401 0 0 0.84033 0 0 105.07966506090573 1014.5710543268186 1119.6507193877244 0 0 0 0 0 0.3494850021680094 0 0.3807196863200844 0 D 0.84033 - 31 + NaN NaN 111004.9 NaN 18019 4070 22090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22092 88.644 NaN 744570 35 0 340830 0.261 -1 0 94 606.3694677211702 1210.7243825091402 2 606.36962890625 MULTI HCD FTMS 0 0 0 22090 250635.546875 0.335331222647301 28 -0.6784896850585938 2 NaN NaN 1 [{I|L}P]A 3 -1 3.9524 0 0 0.32645 0 0 0 926.5171602838499 926.5171602838499 0.8534811358448753 0 0 0 0 0 0 0 0 [{I|L}P]A 0.32645 - 42 + NaN NaN 190988.8 NaN 18020 4070 22090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22093 88.648 NaN 886400 35 0 151190 0.261 + 20357 NYSRVYVSGW 10 70 615.7991555503236 1229.583758167447 2 615.7999267578125 MULTI HCD FTMS 0 0 0 22090 94508.2734375 0.8462710075766665 2 -0.03025054931640625 3 Unmodified _NYSRVYVSGW_ ENST00000583752.1_1_17:38524354-38524411:+|nuORF;ENST00000603675.1_1_3:178211407-178211449:-|nuORF 6.723162845929126 0.4397169348982109 1 [YN]A 3 8 26.796 0 0 2.1792 0 0 0 878.4179123463206 878.4179123463206 7.102868501927873 0 0 0 0 0 1.5228787452803376 0 0.3494850021680094 [YN]A 2.1792 - 64 NaN NaN 211274.3 NaN 18021 4070 22090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22094 88.651 NaN 192010 35 0 26436 0.262 + -1 YLCEGGIAYL 10 54 579.7788599750471 1157.5431670168941 2 579.7792358398438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))EGGIAYL_ REV__ENSG00000130487|ENST00000648057|KLHDC7B;REV__KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;REV__nc|ENSG00000130487|Q96G42|KLHDC7B 15.847184025352803 0.36288280428275715 1 M{I|L} 2 -1 19.464 0 0 1.6815 0 0 0 910.4040011041624 910.4040011041624 10.484550065040281 0 0 0 0 0 0 0 0 M{I|L} 1.6815 - 19 + NaN NaN 113633.7 NaN 18022 4070 22090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22095 88.655 NaN 147080 35 0 8134.5 0.261 + 15122 LMKRVTGCIL 10 73 567.3302412867215 1132.645929640243 2 568.3333129882812 MULTI HCD FTMS 0 0 0 22090 7122.248046875 0.16666668190159722 2 -0.03025054931640625 5 Unmodified _LMKRVTGCIL_ ENSG00000157064|ENST00000287713|NMNAT2;ENST00000473046.1_1_1:183252983-183259825:-|nuORF;nc|ENSG00000157064|Q9BZQ4-2|NMNAT2 3.944395688203298 0.4544253912184634 1 {M(Oxidation (M))|F}D 2 9 13.003 0 0 1.148 0 0 162.19477104824915 705.3336886041624 867.5284596524116 0 0 0 0 0 0 0 0.6549471895720984 0 {M(Oxidation (M))|F}D 1.148 - 244 + NaN NaN 115890.8 NaN 18023 4070 22090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22097 88.66 NaN 179140 35 0 34496 0.327 + 31037 VSSPFIVSL 9 35 474.77369937741815 947.5328458216363 2 474.7735290527344 MULTI HCD FTMS 0 0 0 22096 91571.7734375 0.04716706818463358 14 -0.336029052734375 1 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 25.399314129420986 0.14091189997036632 1 {I|L}{I|L}W{I|L} 4 7 38.8 0 0 4.0948 0 0 404.17186171699376 0 404.17186171699376 0 36.32576888900239 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}W{I|L} 4.0948 - 19 NaN NaN 120916.7 NaN 18024 4071 22096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22098 88.664 NaN 82145 35 0 9137.1 0.261 + 22154 QKLAERHLR 9 59 575.8430775386402 1149.6716021440802 2 575.84326171875 MULTI HCD FTMS 0 0 0 22096 61583.0078125 0.5920508639674582 -3 0.06085968017578125 2 Unmodified _QKLAERHLR_ REV__ENSG00000104738|ENST00000649973|MCM4 1.844237919475145 0.33703635659052655 1 ED 2 -1 6.1979 0 0 0.5391 0 0 498.34446698958646 404.2596761154996 902.604143105086 0 0 0 0 0 0 0 0 0 ED 0.5391 - 11 + NaN NaN 96832.2 NaN 18025 4071 22096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22100 88.669 NaN 436850 35 0 77543 0.327 + 32189 VYTDILIGL 9 57 503.79467089095186 1005.5747888487037 2 503.7945861816406 MULTI HCD FTMS 0 0 0 22099 66238.796875 0.25313241649665913 -3 0.05385589599609375 1 Unmodified _VYTDILIGL_ DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37 60.38955033654506 0.017036522530421875 1 {I|L}{I|L}{I|L}G{I|L} 5 4 51.035 0 0 5.0752 0 0 478.2060719220719 0 478.2060719220719 0 37.05595677153003 0 0 0 1.7302046884880937 0 0 0 + {I|L}{I|L}{I|L}G{I|L} 5.0752 + + 39 NaN NaN 150296.1 NaN 18026 4072 22099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22101 88.676 NaN 209540 35 0 20628 0.283 + 13542 KYPENFFLL 9 53 585.8135793710412 NaN 0 585.813720703125 PEAK HCD FTMS 0 0 0 22099 73460.859375 0.36341268644389235 64 -1.568359375 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 38.175570920033316 0.08412639609110066 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 27.193 0 0 2.3249 0 0 131.09736545053244 628.2743624322874 759.3717278828199 0 0 0 0 0 1.25 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3249 - 153 + NaN NaN 126173.7 NaN 18027 4072 22099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22102 88.68 NaN 280860 35 0 31018 0.261 + 11530 IYSFSLVFF 9 56 561.7951233285085 NaN 0 561.7807006835938 PEAK HCD FTMS 0 0 0 22099 11609.6689453125 0.15893375742402924 22 -0.5398712158203125 3 Unmodified _IYSFSLVFF_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33 14.581692164780916 0.22376707489839515 1 {M(Oxidation (M))|F}V{I|L} 3 7 16.198 0 0 1.4442 0 0 165.10815944325617 594.2243136041624 759.3324730474185 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V{I|L} 1.4442 - 21 + NaN NaN 132878 NaN 18028 4072 22099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22103 88.683 NaN 69393 35 0 16192 0.261 -1 MPDPSNWLSAL 11 35 623.7924435725361 1245.570334211872 2 623.7918090820312 MULTI HCD FTMS 0 0 0 22099 13788.4755859375 0.23603568810909245 -6 0.11719512939453125 4 Oxidation (M) _M(Oxidation (M))PDPSNWLSAL_ ENSG00000108389|ENST00000682306|MTMR4;nc|ENSG00000108389|Q9NYA4|MTMR4 12.174745833636585 0.35100345214875917 1 {I|L}SA{I|L} 4 -1 37.167 0 0 2.9839 0 0 843.3143177716812 0 843.3143177716812 0 35.57319389984244 0 0 0 0.5 0 0.5 0 {I|L}SA{I|L} 2.9839 + + 6 NaN NaN 98716.4 NaN 18029 4072 22099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22104 88.686 NaN 156190 35 0 27497 0.264 -1 0 48 404.1209281980568 806.2273034629136 2 404.1216125488281 MULTI HCD FTMS 0 0 0 22099 26375.888671875 0.2106606121668503 24 -0.5890960693359375 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.68027 0 0 266.99635971466984 389.1326998346313 656.1290595493011 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.68027 - 8 + NaN NaN 111011.9 NaN 18030 4072 22099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22106 88.691 NaN 2325000 35 0 161240 0.326 -1 0 118 589.3431010203685 1176.671649107537 2 589.3433227539062 MULTI HCD FTMS 0 0 0 22105 2459929 0.5375399451780838 24 -0.5867080688476562 1 NaN NaN 1 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 -1 13.258 0 0 1.1267 0 0 546.3252629000316 0 546.3252629000316 0 -1.7896535085279215 -1.7896535085279215 0 0 0.6747425010840047 0 0.5796896906561032 0 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.1267 - 1178 + NaN NaN 433946.2 NaN 18031 4073 22105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22107 88.696 NaN 313460 35 0 40575 0.261 + 12783 KYDVLFALF 9 76 558.3103241922371 1114.606095451274 2 558.3101196289062 MULTI HCD FTMS 0 0 0 22105 75895.7734375 0.012797252069151837 35 -0.8858642578125 2 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 39.94969957227396 0.06557568441294001 1 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 71.137 0 0 6.3822 6.3822 91.146 0 0 0 12.508943624335558 47.26280941356464 12.508943624335558 16.478174818886373 0 2.305462187404089 1.6989700043360187 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 6.3822;4.9038;4.858 -;-;- 558 NaN NaN 129706.6 NaN 18032 4073 22105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22108 88.699 NaN 151040 35 0 17662 0.261 -1 WPSLLGDML 9 50 524.2624620216635 1046.510371110127 2 524.262451171875 MULTI HCD FTMS 0 0 0 22105 41790.01171875 0.17698568364254666 18 -0.43997955322265625 3 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 19.256988751693697 0.19398022840297344 1 {I|L}T[DC]{I|L} 5 -1 26.58 0 0 2.5399 0 0 483.2462330548844 0 483.2462330548844 0 26.580306233405295 0 0 0 0.8252574989159953 0 0 0 {I|L}T[DC]{I|L} 2.5399 - 14 NaN NaN 104676.6 NaN 18033 4073 22105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22109 88.703 NaN 71762 35 0 20980 0.261 -1 QQQQAGVM 8 31 453.2096818797742 NaN 0 453.20953369140625 PEAK HCD FTMS 0 0 0 22105 24581.224609375 0.5953325362509149 5 -0.109100341796875 4 Oxidation (M) _QQQQAGVM(Oxidation (M))_ ENSG00000072840|ENST00000264956|EVC 0.7936320650641473 0.38822285293237185 1 N 1 -1 1.2591 0 0 0.13921 0 0 434.47385487107346 352.8623140924438 787.3361689635173 0 0 0 0 0 0 0 0 0 N 0.13921 - 1 + NaN NaN 91434.6 NaN 18034 4073 22105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22110 88.706 NaN 41870 35 0 4418.5 0.261 + 3637 ELFRKMVAAV 10 35 582.3318481445312 NaN 0 582.3318481445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ELFRKMVAAV_ REV__ENST00000515090.5_1_4:176594985-176622825:-|nuORF 1.4819007175156935 0.33891598740166873 1 S 1 -1 5.4846 0 0 0.47173 0 0 78.1369143537125 994.4712618463499 1072.6081762000624 0 0 0 0 0 0 0 0 0 S 0.47173 - 1 + NaN NaN 100990.6 NaN 18035 4073 22105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22111 88.709 NaN 129880 35 0 14414 0.261 + 35998 YYYVGFAYL 9 45 579.7788599750471 1157.5431670168941 2 579.7796020507812 MULTI HCD FTMS 0 0 0 22105 8574.630859375 0.023320274111707052 20 -0.49082183837890625 6 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 14.581692164780916 0.23437375358055648 1 A[Y{I|L}] 3 6 17.517 0 0 1.5133 0 0 792.3476079542021 0 792.3476079542021 0 17.517346757967548 0 0 0 0.7059771852360797 0 0 0 + A[Y{I|L}] 1.5133 + + 13 NaN NaN 110169.4 NaN 18036 4073 22105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22113 88.714 NaN 1115500 35 0 42226 0.327 -1 0 118 597.8562607199011 1193.6979685066021 2 597.8565063476562 MULTI HCD FTMS 0 0 0 22112 1232557 0.6438311326013368 19 -0.4677734375 1 NaN NaN 1 W 1 -1 11.259 0 0 0.94321 0 0 989.6083516626553 0 989.6083516626553 0 0.4621629584079656 0 0 0 0 0 0 0 W 0.94321 - 340 + NaN NaN 256333.9 NaN 18037 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22114 88.719 NaN 310290 35 0 22995 0.261 -1 0 80 633.369248147757 1264.723943362314 2 633.3692016601562 MULTI HCD FTMS 0 0 0 22112 462597.90625 0.815736604141566 7 -0.175506591796875 2 NaN NaN 1 R 1 -1 10.485 0 0 0.829 0 0 650.3393130906328 455.2496737115844 1105.5889868022173 0 0 0 0 0 0.5 0 0 0 R 0.829 - 44 + NaN NaN 125544.8 NaN 18038 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22115 88.722 NaN 764650 35 0 64102 0.261 -1 LRMCSLFLM 9 74 593.7918116806128 NaN 0 593.8109130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _LRMC(Carbamidomethyl (C))SLFLM(Oxidation (M))_ ENST00000351004.7_1_7:79846663-79846762:+|nuORF 14.838274106304384 0.2220448417561729 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QNE{I|L} 6 -1 34.073 0 0 2.874 0 0 131.05679753293253 273.124230993827 404.1810285267595 0 0 0 0 0 0 0 0 1.2302046884880937 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QNE{I|L} 2.874 - 520 + NaN NaN 193925.4 NaN 18039 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22116 88.726 NaN 364570 35 0 49641 0.262 + 8300 GYADIVQLL 9 45 496.2764359399022 990.5383189466045 2 496.2764892578125 MULTI HCD FTMS 0 0 0 22112 203685.65625 0.055786155062196904 12 -0.311065673828125 4 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 74.92900055777586 0.007493270374442853 1 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 83.198 0 0 8.3992 8.3992 92.11 0 0 0 16.478174818886373 16.478174818886373 16.478174818886373 9.208187539523749 0 1.8494850021680094 1.6989700043360187 0.6109243748081782 0 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L} 8.3992;7.4696;6.7357;5.8006 +;-;-;- + 149 NaN NaN 147605.5 NaN 18040 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22117 88.729 NaN 642640 35 0 66641 0.261 + 15414 LPDIYPDLL 9 62 529.7919782497314 1057.5694035662627 2 529.7921142578125 MULTI HCD FTMS 0 0 0 22112 177098.671875 0.8129973095228002 -4 0.075286865234375 5 Unmodified _LPDIYPDLL_ ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39 24.020572477871973 0.15282392193088168 1 {M(Oxidation (M))|F}C(Carbamidomethyl (C))Y[DP]{I|L}{I|L} 7 4 41.259 0 0 3.9013 0 0 131.17237975331517 0 131.17237975331517 0 9.493106925747412 0 0 0 1.8494850021680094 0 1.305462187404089 0 {M(Oxidation (M))|F}C(Carbamidomethyl (C))Y[DP]{I|L}{I|L} 3.9013 - 304 + NaN NaN 180367.2 NaN 18041 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22118 88.732 NaN 256140 35 0 81084 0.263 + 1834 CSYGCSSC 8 35 405.11826224959816 808.2219715659963 2 405.1190185546875 MULTI HCD FTMS 0 0 0 22112 80432.9140625 0.07635267483949895 -6 0.115570068359375 6 Unmodified _CSYGCSSC_ REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1 0 0.5419923896992614 1 V 1 -1 3.4949 0 0 0.43241 0 0 422.0490112161901 284.07484599908315 706.1238572152732 0 0 0 0 0 0 0 0 0 V 0.43241 - 2 + NaN NaN 135195.2 NaN 18042 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22119 88.736 NaN 76386 35 0 12299 0.261 + 34087 YNLVLMLQLH 10 32 622.3471065222012 1242.6796601112023 2 622.3478393554688 MULTI HCD FTMS 0 0 0 22112 39239.0859375 0.7880899108594052 6 -0.14239501953125 7 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 1 [YN]{I|L} 3 -1 27.447 0 0 2.2087 0 0 0 849.46785142345 849.46785142345 16.478174818886373 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 2.2087 + + 13 NaN NaN 87069.1 NaN 18043 4074 22112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22121 88.741 NaN 252660 35 0 48249 0.327 + 30736 VPIYDLTL 8 45 467.26816253974033 932.5217721462807 2 467.2681579589844 MULTI HCD FTMS 0 0 0 22120 200900.25 0.302690366333611 7 -0.17238616943359375 1 Unmodified _VPIYDLTL_ REV__ENST00000425497.5_1_20:48895601-48895982:+|nuORF 23.1484247019978 0.4234759064137959 1 W{I|L}T{I|L} 4 -1 44.68 0 0 4.7914 0 0 401.21406752754064 0 401.21406752754064 0 44.680475292681265 0 0 0 1 0 0.4247425010840047 0 W{I|L}T{I|L} 4.7914 - 17 NaN NaN 118801.7 NaN 18044 4075 22120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22123 88.747 NaN 1319500 35 0 166860 0.326 + 32310 VYVDFEGINF 10 82 601.7900346758779 1201.5655164185557 2 601.7901611328125 MULTI HCD FTMS 0 0 0 22122 725059.625 0.6758939973080657 1 -0.0360260009765625 1 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 157.7952019732125 1.3404113081044716E-08 1 [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 10 0 + 106.18 0 0 8.837 8.837 91.323 0 0 0 17.492573937560238 7.786596949921218 7.786596949921218 7.786596949921218 0 2.6747425010840047 1.3010299956639813 1.4308845489566888 0 + + [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}{M(Oxidation (M))|F}N;[YV]VD{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}N{M(Oxidation (M))|F};[YV]DV{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}VEG{I|L}N{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}{M(Oxidation (M))|F}N;[YV]DV{M(Oxidation (M))|F}EG{I|L}{M(Oxidation (M))|F}N;[YV]VDE{M(Oxidation (M))|F}G{I|L}GG{M(Oxidation (M))|F};[YV]DV{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F} 8.837;8.1889;8.0743;7.8934;7.8391;7.4856;7.2453;7.1911;7.1306;7.0764 +;-;-;-;-;-;-;-;-;- + 4230 NaN NaN 283996.9 NaN 18045 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22124 88.752 NaN 636700 35 0 73488 0.261 -1 0 89 611.3720523561143 610.3647758895142 1 611.3560180664062 MULTI HCD FTMS 0 0 0 22122 35363.5234375 0.7509074612633772 3 -0.08892822265625 2 NaN NaN 1 M 1 -1 1.5938 0 0 0.26112 0 0 54.031659289707996 422.2698153131469 476.3014746028549 0 0 0 0 0 0 0 0 0 M 0.26112 - 13 + NaN NaN 178633.7 NaN 18046 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22125 88.756 NaN 1635900 35 0 265650 0.262 -1 0 91 519.8182847761453 1037.6220166190906 2 519.818359375 MULTI HCD FTMS 0 0 0 22122 192764.390625 0.3847248505840982 -5 0.08827972412109375 3 NaN NaN 1 {M(Oxidation (M))|F}TYV 4 -1 19.909 0 0 1.9187 0 0 99.1743124393084 425.17963586978755 524.3539483090959 0 0 0 0 0 0 0 0.9247425010840047 0 {M(Oxidation (M))|F}TYV 1.9187 - 637 + NaN NaN 331699.3 NaN 18047 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22126 88.759 NaN 513830 35 0 61115 0.261 + 15714 LPESVSIFSL 10 62 546.3028827054109 1090.5912124776216 2 546.3030395507812 MULTI HCD FTMS 0 0 0 22122 216160.875 0.6996624759632089 5 -0.141937255859375 4 Unmodified _LPESVSIFSL_ ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17 88.95385435242217 0.0010827080174394257 1 {[TV]|[{I|L}S]}[EP]VS{I|L}{M(Oxidation (M))|F}S{I|L} 10 2 + 79.429 0 0 7.2831 7.2831 93.086 0 0 0 13.529047144331614 53.14281341297949 13.529047144331614 17.78151250383644 0 1.9247425010840047 1.6989700043360187 1.6237125054200234 0 {[TV]|[{I|L}S]}[EP]VS{I|L}{M(Oxidation (M))|F}S{I|L};[EP]{[TV]|[{I|L}S]}VS{I|L}{M(Oxidation (M))|F}S{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[HQ]{I|L}{M(Oxidation (M))|F}S{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[HQ]{M(Oxidation (M))|F}S{I|L} 7.2831;5.6527;5.4872;4.5989 -;-;-;- 351 NaN NaN 171881.4 NaN 18048 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22127 88.762 NaN 504310 35 0 53999 0.261 + 7716 FYLMQIVEI 9 64 586.3061520884293 1170.5977512436584 2 586.3057861328125 MULTI HCD FTMS 0 0 0 22122 78020.8828125 0.2680441460913391 -4 0.07860565185546875 5 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 69.10491478415734 0.009377850133389008 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP]M{I|L}VE{I|L} 10 5 + 70.93 0 0 6.0593 6.0593 84.891 0 0 0 5.228787452803374 16.532125137753432 5.228787452803374 3.679767852945929 0 1.274227503252014 1.2218487496163564 0.6382104921644451 0.5941876774005248 {NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP]M{I|L}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}M[EP]{I|L}VE{I|L};{[QN]|[E{I|L}]|[KN]}V[EP]M{I|L}VE{I|L};{[QN]|[E{I|L}]|[KN]}VM[EP]{I|L}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP]MRRAA;{NN|[MP]|[D{I|L}]|[EV]}{I|L}M[EP]RRAA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[QA]{[WT]|[RM]}{[QD]|[EN]|[WG]|[KD]|[RS]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[EP][WR]{[QD]|[EN]|[WG]|[KD]|[RS]} 6.0593;5.7449;5.6126;5.2983;1.1197;0.80531;0.1552;0.13335 -;-;-;-;-;-;-;- 1014 NaN NaN 176136.1 NaN 18049 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22128 88.766 NaN 331980 35 0 28576 0.261 + 28131 TIPDLDWEL 9 60 551.2769790979767 1100.5394052627532 2 551.2767944335938 MULTI HCD FTMS 0 0 0 22122 158444.9375 0.24431726408348223 17 -0.4342041015625 6 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 78.14939416004806 0.006451203201226903 1 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 56.092 0 0 5.0968 5.0968 84.047 0 0 0 5.484550065040281 16.478174818886373 5.484550065040281 5.484550065040281 0 1.774227503252014 1.6989700043360187 1.1237125054200234 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};[VP]ED[{I|L}T]WE{I|L} 5.0968;4.5985;3.3028;2.9208 +;-;-;- + 295 NaN NaN 154381.3 NaN 18050 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22129 88.769 NaN 98357 35 0 4552.7 0.261 + 31115 VTLTNHKKSVR 11 60 641.8825694802825 1281.750586027365 2 641.882568359375 MULTI HCD FTMS 0 0 0 22122 145519.921875 0.628424883649013 6 -0.165130615234375 7 Unmodified _VTLTNHKKSVR_ ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 2.735195868890462 0.4069250265843076 1 D 1 11 5.7969 0 0 0.45226 0 0 105.07664815869323 1058.5962618463502 1163.6729100050434 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.45226 - 11 + NaN NaN 96922.3 NaN 18051 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22130 88.772 NaN 200380 35 0 23395 0.263 + 31831 VYMGLLAVF 9 47 514.7777485443444 1027.5409441554887 2 514.7760620117188 MULTI HCD FTMS 0 0 0 22122 33284.44921875 0.20184370290174075 -13 0.2757568359375 8 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 79.93452657146344 0.0058735632865073864 1 {I|L}AV{M(Oxidation (M))|F} 4 5 47.735 0 0 4.6456 0 0 579.2712046991802 0 579.2712046991802 0 12.786596949921218 0 0 0 1.8807196863200843 0 0 0 + {I|L}AV{M(Oxidation (M))|F} 4.6456 + + 98 NaN NaN 119834.7 NaN 18052 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22131 88.776 NaN 91786 35 0 13201 0.261 + 34088 YNLVLMLQLH 10 48 622.3471065222012 1242.6796601112023 2 622.3475341796875 MULTI HCD FTMS 0 0 0 22122 25401.080078125 0.5101631308738267 8 -0.2246856689453125 9 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 1 [YN]{I|L} 3 -1 25.686 0 0 2.067 0 0 0 849.4668054571586 849.4668054571586 12.498774732165998 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L} 2.067 + + 32 NaN NaN 97782.8 NaN 18053 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22132 88.779 NaN 97796 35 0 16525 0.264 + 21767 QAGHLSCYSLF 11 53 409.1946011485264 NaN 0 409.1831359863281 PEAK HCD FTMS 0 0 0 22122 5534.52587890625 1 0 0 10 Unmodified _QAGHLSCYSLF_ REV__ENSG00000104093|ENST00000560891|DMXL2;REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2;REV__nc|ENSG00000104093|Q8TDJ6-3|DMXL2;REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 2.843284757254958 0.33405456343542356 1 V 1 -1 1.5938 0 0 0.19523 0 0 582.2379744144372 132.04519067935783 714.283165093795 0 0 0 0 0 0 0 0 0 V 0.19523 - 6 + NaN NaN 97097.3 NaN 18054 4076 22122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22134 88.784 NaN 115070 35 0 6339 0.326 + 16664 LWILAAVAVYF 11 49 422.5816310118399 1264.7230636357197 3 422.5818786621094 MULTI HCD FTMS 0 0 0 22133 81937.7578125 1 0 0 1 Unmodified _LWILAAVAVYF_ ENSG00000206579|ENST00000327381|XKR4;XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant 0.5059551277355931 0.4167017191902429 1 {M(Oxidation (M))|F} 1 10 13.979 0 0 1.1053 0 0 1099.6439295798586 0 1099.6439295798586 0 13.979400086720375 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1053 + + 4 + NaN NaN 104926.3 NaN 18055 4077 22133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22135 88.788 NaN 203510 35 0 20573 0.261 + 2839 DYLFKVVLI 9 51 555.3337877393362 1108.6530225454724 2 555.3340454101562 MULTI HCD FTMS 0 0 0 22133 95157.4921875 0.15266309394568633 11 -0.28772735595703125 2 Unmodified _DYLFKVVLI_ ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B 47.594388314883695 0.03493607795751234 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 9 0 + 78.031 0 0 7.0383 7.0383 95.299 0 0 0 16.141303353600094 16.141303353600094 16.141303353600094 78.03063774097893 0 2.1989700043360187 2 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 7.0383 + + 132 NaN NaN 128463.7 NaN 18056 4077 22133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22136 88.792 NaN 88177 35 0 20125 0.261 -1 MPDPSNWLSAL 11 38 623.7924435725361 1245.570334211872 2 623.793701171875 MULTI HCD FTMS 0 0 0 22133 35850.25 0.6136964434460832 -1 0.0360260009765625 3 Oxidation (M) _M(Oxidation (M))PDPSNWLSAL_ ENSG00000108389|ENST00000682306|MTMR4;nc|ENSG00000108389|Q9NYA4|MTMR4 18.721224879955976 0.29396376558286563 1 W{I|L}SA{I|L} 5 -1 48.778 0 0 3.9161 0 0 657.2408924787125 0 657.2408924787125 0 42.57974430788661 0 0 0 1.305462187404089 0 0.5 0 W{I|L}SA{I|L} 3.9161 + + 19 NaN NaN 93840.1 NaN 18057 4077 22133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22137 88.795 NaN 94660 35 0 19745 0.261 + 5318 FFLDRDGFLF 10 44 638.8217801607339 1275.6290073882676 2 638.8231201171875 MULTI HCD FTMS 0 0 0 22133 19894.072265625 0.29822422786660235 -3 0.0695953369140625 4 Unmodified _FFLDRDGFLF_ ENSG00000178695|ENST00000377474|KCTD12 12.240655878213236 0.39661705172222156 1 E{M(Oxidation (M))|F} 2 9 21.454 0 0 1.6818 0 0 981.4964297838576 0 981.4964297838576 0 19.85985638199878 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 1.6818 - 9 NaN NaN 113701.1 NaN 18058 4077 22133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22139 88.8 NaN 2123700 35 0 386760 0.326 + 30084 VFTYVGALF 9 70 508.77624870781165 1015.5379444824233 2 508.77630615234375 MULTI HCD FTMS 0 0 0 22138 1088373.25 0.7854244401891156 -2 0.05248260498046875 1 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 170.39725721280982 3.610137724047835E-09 1 [{M(Oxidation (M))|F}V]TYVGA{I|L}{M(Oxidation (M))|F} 9 0 + 98.466 0 0 9.696 9.696 95.611 0 0 0 13.723415906970445 58.623282732255966 13.723415906970445 13.780221703767324 0 2.6549471895720984 0.958607314841775 2.3737125054200234 0 + + [{M(Oxidation (M))|F}V]TYVGA{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TYVQ{I|L}{M(Oxidation (M))|F};[{I|L}A]YYVGA{I|L}{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}VGA{I|L}{M(Oxidation (M))|F};[YT]V{M(Oxidation (M))|F}VGA{I|L}{M(Oxidation (M))|F};[{I|L}A]YYVQ{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TYVAAV{M(Oxidation (M))|F};[{I|L}A]GVYYA{I|L}{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}VQ{I|L}{M(Oxidation (M))|F};[YT]V{M(Oxidation (M))|F}VQ{I|L}{M(Oxidation (M))|F} 9.696;8.339;7.1821;6.7787;6.6928;6.1693;5.8281;5.7804;5.4217;5.3359 +;-;-;-;-;-;-;-;-;- + 1267 NaN NaN 402099 NaN 18059 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22140 88.805 NaN 920140 35 0 87235 0.261 + -1 MMKAKVSIM 9 78 527.7764399225881 1053.5383269119761 2 527.7947998046875 MULTI HCD FTMS 0 0 0 22138 21719.958984375 0.2989797561106232 10 -0.271270751953125 2 Oxidation (M) _MM(Oxidation (M))KAKVSIM_ REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF 10.823927491677226 0.26684000660059787 1 [YT]{M(Oxidation (M))|F}ST{I|L}P{I|L} 8 -1 53.37 0 0 5.0658 0 0 0 128.03572980531763 128.03572980531763 14.024174299985006 0 0 0 0 0 1.5228787452803376 1.079689690656103 0 [YT]{M(Oxidation (M))|F}ST{I|L}P{I|L} 5.0658 - 405 NaN NaN 224296.9 NaN 18060 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22141 88.809 NaN 435360 35 0 192980 0.261 -1 0 71 606.3694677211702 1210.7243825091402 2 606.3697509765625 MULTI HCD FTMS 0 0 0 22138 210194.796875 0.28122458729027733 36 -0.9274368286132812 3 NaN NaN 1 [Y{I|L}]G{I|L}[EC]S{I|L} 8 -1 31.604 0 0 2.6103 0 0 0 329.283622581659 329.283622581659 24.614262661931434 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]G{I|L}[EC]S{I|L} 2.6103 - 52 NaN NaN 146742 NaN 18061 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22142 88.812 NaN 379120 35 0 52440 0.261 + 10883 IWDETPLYF 9 62 592.2869259862467 1182.5592990392934 2 592.287353515625 MULTI HCD FTMS 0 0 0 22138 161635.96875 0.06971869794366982 17 -0.43169403076171875 4 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 48.345845343767074 0.03388484103555672 1 [YV]{I|L}YTA[SG]Y{M(Oxidation (M))|F} 10 7 + 61.986 0 0 5.2417 5.2417 84.054 0 0 0 3.4286373909302625 44.8143091967637 3.4286373909302625 4.815534464597704 0 1.4247425010840047 0 1.0114393726401687 0 [YV]{I|L}YTA[SG]Y{M(Oxidation (M))|F};[YV]{I|L}YT{[QS]|[NT]}Y{M(Oxidation (M))|F} 5.2417;4.8345 -;- 384 NaN NaN 146882.6 NaN 18062 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22143 88.815 NaN 647650 35 0 64403 0.262 + 32190 VYTDILIGL 9 60 503.79467089095186 1005.5747888487037 2 503.7947082519531 MULTI HCD FTMS 0 0 0 22138 140246.3125 0.5359530918845755 3 -0.08945465087890625 5 Unmodified _VYTDILIGL_ DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37 50.855029805455786 0.030374663808198754 1 {I|L}{I|L}{I|L}G{I|L} 5 4 52.875 0 0 5.2582 0 0 478.2075367658219 0 478.2075367658219 0 38.2711470149615 0 0 0 1.7302046884880937 0 0 0 + {I|L}{I|L}{I|L}G{I|L} 5.2582 + + 45 NaN NaN 180834.3 NaN 18063 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22144 88.819 NaN 176660 35 0 19977 0.261 -1 0 74 619.8695022068749 1237.7244514805498 2 619.8692016601562 MULTI HCD FTMS 0 0 0 22138 159532.578125 0.240466761646714 34 -0.8883743286132812 6 NaN NaN 1 D 1 -1 5.5289 0 0 0.4467 0 0 105.08163471151722 1014.5700167291624 1119.6516514406796 0 0 0 0 0 0.3054621874040891 0 0 0 D 0.4467 - 64 + NaN NaN 113039.1 NaN 18064 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22145 88.822 NaN 273350 35 0 12896 0.261 + 27348 SYRRRLPSV 9 87 567.3302412867215 1132.645929640243 2 567.330810546875 MULTI HCD FTMS 0 0 0 22138 166593.09375 1 0 0 7 Unmodified _SYRRRLPSV_ ENST00000313465.5_2_8:145752728-145753355:-|nuORF;nc|nan|Q6P1X6-2|C8orf82 6.723162845929126 0.3000504726104499 1 SW 2 8 14.949 0 0 1.3198 0 0 841.5238726107492 0 841.5238726107492 0 0.34440644703906287 0 0 0 0 0 0 0 SW 1.3198 - 252 + NaN NaN 122023.3 NaN 18065 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22146 88.825 NaN 124120 35 0 22971 0.261 + 8077 GILWRVLFF 9 60 575.8430775386402 1149.6716021440802 2 575.84326171875 MULTI HCD FTMS 0 0 0 22138 72701.7421875 0.6989449005982454 4 -0.11264801025390625 8 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 16.198 0 0 1.4089 0 0 837.5575407200553 0 837.5575407200553 0 8.239087409443187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4089 + + 29 + NaN NaN 97424.5 NaN 18066 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22147 88.829 NaN 107510 35 0 19702 0.262 + 31038 VSSPFIVSL 9 42 474.77369937741815 947.5328458216363 2 474.77349853515625 MULTI HCD FTMS 0 0 0 22138 49961.20703125 0.025734170805788194 21 -0.536773681640625 9 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 25.399314129420986 0.14091189997036632 1 C{I|L}W{I|L} 4 7 36.938 0 0 3.8984 0 0 414.2482166974625 0 414.2482166974625 0 36.938200260161125 0 0 0 1 0 0 0 C{I|L}W{I|L} 3.8984 - 24 NaN NaN 103743.8 NaN 18067 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22148 88.832 NaN 66630 35 0 5794.8 0.261 -1 YLRMVEYDGL 10 33 637.8104007800133 1273.6062486268265 2 638.3090209960938 MULTI HCD FTMS 0 0 0 22138 18739.611328125 0.9020412664459954 1 -0.03644561767578125 10 Oxidation (M) _YLRM(Oxidation (M))VEYDGL_ ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5 5.296884461304476 0.4472664531305844 1 Y{I|L} 2 -1 20.969 0 0 1.6464 0 0 0 994.4437960260374 994.4437960260374 17.870156338638594 0 0 0 0 0 0 0 0 Y{I|L} 1.6464 + + 8 + NaN NaN 92156.8 NaN 18068 4078 22138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22150 88.837 NaN 1810700 35 0 61187 0.327 -1 0 114 589.3431010203685 1176.671649107537 2 589.3433837890625 MULTI HCD FTMS 0 0 0 22149 2320048.5 0.506973470982494 30 -0.7698440551757812 1 NaN NaN 1 Q 1 -1 9.732 0 0 0.82708 0 0 634.3776363641589 411.22341660143263 1045.6010529655914 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.82708 - 205 + NaN NaN 332310.5 NaN 18069 4079 22149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22151 88.841 NaN 1013900 35 0 157990 0.261 + 17471 LYSQLQVFF 9 87 572.8053950543868 1143.5962371755736 2 572.8056030273438 MULTI HCD FTMS 0 0 0 22149 516685.3125 0.833075441966683 -1 0.03644561767578125 2 Unmodified _LYSQLQVFF_ ENSG00000068438|ENST00000348411|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;ENST00000492562.5_1_X:48334751-48340044:+|nuORF;nc|ENSG00000068438|Q9UET6-2|FTSJ1 118.89474601620944 0.0014903111061077812 1 [Y{I|L}]SQ{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 90.701 0 0 7.9312 7.9312 91.327 0 0 0 1.7508318932272715 66.80023825671313 1.7508318932272715 9.208187539523749 0 2.2614393726401687 0 1.8723637474483468 1.274227503252014 + + [Y{I|L}]SQ{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]S[AG]{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]SQ{I|L}[AG]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]S[AG]{I|L}[AG]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.9312;7.126;7.126;5.2104 +;-;-;- + 278 NaN NaN 237630 NaN 18070 4079 22149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22152 88.845 NaN 303940 35 0 40780 0.261 + 31832 VYMGLLAVF 9 60 514.7777485443444 1027.5409441554887 2 514.7774658203125 MULTI HCD FTMS 0 0 0 22149 97908.453125 0.5937368707606236 -10 0.2213897705078125 3 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 79.93452657146344 0.0058735632865073864 1 [YV]G{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AV{M(Oxidation (M))|F} 9 2 + 73.579 0 0 7.1607 7.1607 87.175 0 0 0 20.113168458567685 73.57894990110104 20.113168458567685 4.259687322722812 0 2.4247425010840047 1.6989700043360187 0 0 [YV]G{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AV{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L}AV{M(Oxidation (M))|F};[YV]G{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A{M(Oxidation (M))|F}V;[YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L}A{M(Oxidation (M))|F}V 7.1607;6.7461;6.2098;5.7952 -;+;-;- + 161 NaN NaN 127076.9 NaN 18071 4079 22149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22153 88.848 NaN 294990 35 0 32206 0.261 + -1 LAPILSELIMT 11 75 608.8474741125639 NaN 0 608.847412109375 PEAK HCD FTMS 0 0 0 22149 67256.8125 0.23952613352719035 37 -0.9367218017578125 4 Oxidation (M) _LAPILSELIM(Oxidation (M))T_ REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 2.9952420565917617 0.33362350433860827 1 AP 2 -1 10.969 0 0 0.9023 0 0 166.1753826186353 878.3928307928098 1044.5682134114452 0 0 0 0 0 0 0 0 0 AP 0.9023 + + 43 + NaN NaN 129455.3 NaN 18072 4079 22149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22154 88.852 NaN 217950 35 0 8297.7 0.263 + 12191 KKNQNIQK 8 77 500.7986821121983 999.5828112911967 2 500.79901123046875 MULTI HCD FTMS 0 0 0 22149 134855.703125 0.4852117966963997 -2 0.0529022216796875 5 Unmodified _KKNQNIQK_ ENSG00000125871|ENST00000377710|MGME1 5.230669730166228 0.5342319408533849 1 A 1 8 10.485 0 0 1.0489 0 0 105.0790542698805 820.4575574759189 925.5366117457994 0 0 0 0 0 0.5 0 0 0 A 1.0489 - 14 + NaN NaN 115644.1 NaN 18073 4079 22149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22156 88.857 NaN 959970 35 0 35616 0.327 -1 0 114 597.8562607199011 1193.6979685066021 2 597.8564453125 MULTI HCD FTMS 0 0 0 22155 1168686.25 0.6104679880874548 25 -0.6313095092773438 1 NaN NaN 1 A[RV]N 4 -1 14.977 0 0 1.2547 0 0 735.4247914044937 0 735.4247914044937 0 2.224315063584905 0 0 0 0.6643943297944485 0 0 0.3807196863200844 A[RV]N 1.2547 - 407 NaN NaN 244735.5 NaN 18074 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22157 88.861 NaN 197130 35 0 8227.6 0.261 -1 0 80 633.369248147757 1264.723943362314 2 633.369384765625 MULTI HCD FTMS 0 0 0 22155 365456.34375 0.6444389669405639 13 -0.32537841796875 2 NaN NaN 1 R 1 -1 9.2917 0 0 0.73469 0 0 650.3387027390703 455.2497652643188 1105.5884680033892 0 0 0 0 0 0.3807196863200844 0 0 0 R 0.73469 - 42 + NaN NaN 111959.1 NaN 18075 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22158 88.865 NaN 365750 35 0 18320 0.264 + 3652 ELKPNRLN 8 79 492.28538407462605 982.5562152160521 2 492.2854919433594 MULTI HCD FTMS 0 0 0 22155 295656.5625 0.7458502711696183 -3 0.0727996826171875 3 Unmodified _ELKPNRLN_ REV__ENSG00000179111|ENST00000541682|HES7;REV__nc|ENSG00000179111|Q9BYE0|HES7 10.073929032068715 0.5196730168178844 1 {I|L}N 2 -1 14.949 0 0 1.5214 0 0 737.4140492169937 0 737.4140492169937 0 2.8665453570295956 0 0 0 0 0 0 0 {I|L}N 1.5214 + + 41 NaN NaN 141596.3 NaN 18076 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22159 88.868 NaN 291370 35 0 77778 0.261 + 17754 MEDRRQFL 8 57 547.7743452073211 NaN 0 547.7923583984375 PEAK HCD FTMS 0 0 0 22155 16026.974609375 0.898915667586782 1 -0.033111572265625 4 Unmodified _MEDRRQFL_ REV__ENSG00000136935|ENST00000373555|GOLGA1 13.50788311687929 0.38822285293237185 1 {M(Oxidation (M))|F}EET{M(Oxidation (M))|F} 5 -1 21.67 0 0 1.9817 0 0 131.05870357859175 306.1820467584594 437.24075033705117 0 0 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}EET{M(Oxidation (M))|F} 1.9817 - 125 + NaN NaN 141310.9 NaN 18077 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22160 88.872 NaN 296620 35 0 37817 0.261 + 29407 TYSFYLGLL 9 54 538.7856032624005 1075.556653591601 2 538.785888671875 MULTI HCD FTMS 0 0 0 22155 114474.5859375 1 0 0 5 Unmodified _TYSFYLGLL_ tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1 15.847184025352803 0.2234401846867398 1 [YT]{M(Oxidation (M))|F}ST 5 6 47.888 0 0 4.4523 0 0 0 473.27561365299067 473.27561365299067 25.58037176564042 0 0 0 0 0.805462187404089 2 0 0 [YT]{M(Oxidation (M))|F}ST 4.4523 - 31 + NaN NaN 133260.3 NaN 18078 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22161 88.875 NaN 123020 35 0 14703 0.261 + 8301 GYADIVQLL 9 38 496.2764359399022 990.5383189466045 2 496.2760314941406 MULTI HCD FTMS 0 0 0 22155 68715.84375 0.018820140726856872 18 -0.46080780029296875 6 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 26.268140514670165 0.13340543277302316 1 {I|L}VQ{I|L}{I|L} 5 4 51.186 0 0 5.1675 0 0 406.14866835761876 0 406.14866835761876 0 46.5815315012393 0 0 0 1.9247425010840047 0 0 0 + {I|L}VQ{I|L}{I|L} 5.1675 + + 62 NaN NaN 101186.4 NaN 18079 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22162 88.878 NaN 273820 35 0 33346 0.261 + 12784 KYDVLFALF 9 67 558.3103241922371 1114.606095451274 2 558.3106079101562 MULTI HCD FTMS 0 0 0 22155 84558.65625 0.014257953897144663 42 -1.0638885498046875 7 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 67.374 0 0 6.0446 6.0446 93.28 0 0 0 10.123337350737245 52.435464932947724 10.123337350737245 67.37388445241912 0 2.2302046884880937 1.5228787452803376 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 6.0446 - 251 NaN NaN 119703.1 NaN 18080 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22163 88.882 NaN 166250 35 0 12512 0.261 -1 VYSTMLVFF 9 47 561.7806895372947 1121.5468261413894 2 561.7816772460938 MULTI HCD FTMS 0 0 0 22155 34508.8359375 0.13401658018398654 23 -0.5721435546875 8 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ ENSG00000104613|ENST00000397977|INTS10 12.531546534597751 0.2520865569484384 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3155 0 0 809.4018173804967 0 809.4018173804967 0 4.798187706630159 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3155 + + 56 NaN NaN 107409.7 NaN 18081 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22164 88.885 NaN 92778 35 0 7145.4 0.261 -1 WPSLLGDML 9 40 524.2624620216635 1046.510371110127 2 524.2617797851562 MULTI HCD FTMS 0 0 0 22155 31238.095703125 0.13229706086031814 25 -0.6313095092773438 9 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F}{I|L} 2 -1 20.969 0 0 2.0037 0 0 768.3827992169937 0 768.3827992169937 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 2.0037 + + 3 NaN NaN 102958.2 NaN 18082 4080 22155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22166 88.89 NaN 1506600 35 0 583840 0.327 + 1835 CSYGCSSC 8 55 405.11826224959816 808.2219715659963 2 405.1189880371094 MULTI HCD FTMS 0 0 0 22165 974603.25 0.9251631115459302 1 -0.023193359375 1 Unmodified _CSYGCSSC_ REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1 0 0.5419923896992614 1 V 1 -1 8.9794 0 0 1.111 0 0 506.10842894079946 200.01862512760002 706.1270540683995 0 0 0 0 0 0.5 0 0 0 V 1.111 - 20 + NaN NaN 315724.8 NaN 18083 4081 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22167 88.894 NaN 462500 35 0 49659 0.261 + 32311 VYVDFEGINF 10 88 601.7900346758779 1201.5655164185557 2 601.7903442382812 MULTI HCD FTMS 0 0 0 22165 408681.4375 0.3809691243219913 6 -0.14868927001953125 2 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 125.52916310638031 2.8570307479996667E-05 1 [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 10 0 + 98.427 0 0 8.1916 8.1916 93.338 0 0 0 17.31385690090015 86.49156721869439 17.31385690090015 12.219161359540138 0 2.274227503252014 1.154901959985743 1.1976212463643423 0.3054621874040891 + + [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EVAN{M(Oxidation (M))|F};[YV]VD[VS]YPN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}T]{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG[{M(Oxidation (M))|F}V]Q;[YV]VD[VS]YPGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[YV]VEG{I|L}N{M(Oxidation (M))|F} 8.1916;7.1747;6.5859;5.7808;5.5742;5.569;5.3174;4.8541;4.5573;4.5111 +;-;-;-;-;-;-;-;-;- + 1883 NaN NaN 173364.6 NaN 18084 4081 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22168 88.898 NaN 660810 35 0 85025 0.261 -1 CMDGALLVNTM 11 77 620.7725151260314 1239.5304773188627 2 620.7728881835938 MULTI HCD FTMS 0 0 0 22165 382199.46875 0.7827753220366753 -2 0.053009033203125 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))DGALLVNTM_ ENST00000419794.1_1_9:34318953-34319253:+|nuORF 34.93206674587334 0.1695891461859059 1 [YN]SV{I|L} 5 -1 72.734 0 0 5.8679 0 0 0 660.21728104609 660.21728104609 40.42165612183766 0 0 0 0 2 1.6989700043360187 1.4247425010840047 0.7059771852360797 [YN]SV{I|L} 5.8679 - 399 NaN NaN 193233.1 NaN 18085 4081 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22169 88.901 NaN 139140 35 0 24908 0.264 + -1 MFPSIPLL 8 47 467.25876922601424 NaN 0 467.26824951171875 PEAK HCD FTMS 0 0 0 22165 8164.04931640625 0.6423121260888399 -4 0.1059112548828125 4 Oxidation (M) _M(Oxidation (M))FPSIPLL_ REV__ENSG00000198763|ENST00000361453|MT-ND2 9.347437153973935 0.38822285293237185 1 T{I|L} 2 -1 14.464 0 0 1.5511 0 0 131.07843443592134 584.2746873750007 715.353121810922 0 0 0 0 0 0 0 0.3494850021680094 0 T{I|L} 1.5511 - 14 + NaN NaN 99730.2 NaN 18086 4081 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22170 88.905 NaN 371840 35 0 77863 0.261 + 20376 NYVEDIPFL 9 65 555.2793796271978 1108.5442063211956 2 555.279541015625 MULTI HCD FTMS 0 0 0 22165 126855.3515625 0.6268443427955164 -2 0.053009033203125 5 Unmodified _NYVEDIPFL_ ENSG00000162836|ENST00000583509|ACP6;nc|ENSG00000162836|Q9NPH0-2|ACP6 49.55428908609986 0.03219431099695407 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}ND{I|L}P{M(Oxidation (M))|F}{I|L} 9 3 + 65.702 0 0 5.9269 5.9269 89.663 0 0 0 19.366130211356065 51.098294898873036 19.366130211356065 13.015384402724592 0 1.2059771852360797 1.5228787452803376 0.3494850021680094 0.3807196863200844 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}ND{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}GGD{I|L}P{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E][QT]D{I|L}P{M(Oxidation (M))|F}{I|L} 5.9269;4.7528;3.1855 -;-;- 172 NaN NaN 147262.3 NaN 18087 4081 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22171 88.908 NaN 68364 35 0 6723.5 0.261 -1 0 45 580.2954884701888 579.2882120035888 1 581.3031005859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93643.2 NaN 18088 4081 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22173 88.913 NaN 1932100 35 0 339460 0.326 -1 0 81 519.8182847761453 1037.6220166190906 2 519.8184204101562 MULTI HCD FTMS 0 0 0 22172 269003.25 0.5368846124916222 1 -0.02982330322265625 1 NaN NaN 1 {M(Oxidation (M))|F}TYV 4 -1 20.394 0 0 1.9654 0 0 99.17000834875473 425.1799456222197 524.3499539709744 0 0 0 0 0 0 0 0.9247425010840047 0 {M(Oxidation (M))|F}TYV 1.9654 - 214 + NaN NaN 387788.9 NaN 18089 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22174 88.917 NaN 470920 35 0 59666 0.261 -1 0 81 611.3720523561143 610.3647758895142 1 611.3563232421875 MULTI HCD FTMS 0 0 0 22172 22665.150390625 0.4812707808670786 9 -0.218231201171875 2 NaN NaN 1 M 1 -1 2.4743 0 0 0.40537 0 0 54.030743762364246 422.26935754947505 476.3001013118393 0 0 0 0 0 0 0 0 0 M 0.40537 - 2 + NaN NaN 157198.7 NaN 18090 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22175 88.921 NaN 310550 35 0 36418 0.261 -1 FYLMQIVEI 9 59 586.3061520884293 1170.5977512436584 2 586.3063354492188 MULTI HCD FTMS 0 0 0 22172 129540.8203125 0.44504313861817285 2 -0.0595550537109375 3 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 36.506200033944 0.08138327636155518 1 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 -1 44.901 0 0 3.8357 0 0 244.17805678535314 0 244.17805678535314 0 33.932080157878985 0 0 0 1.7302046884880937 0 0 0 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 3.8357 - 341 NaN NaN 130112.1 NaN 18091 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22176 88.925 NaN 849050 35 0 129790 0.261 + 29415 TYSVCRCTH 9 63 535.231937644125 1068.4493223550498 2 535.2321166992188 MULTI HCD FTMS 0 0 0 22172 140805.4375 0.5702122312102577 2 -0.0595550537109375 4 Unmodified _TYSVCRCTH_ ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-2|ADGRD1;nc|ENSG00000111452|Q6QNK2-3|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1 10.823927491677226 0.26684000660059787 1 [YT]VS{M(Oxidation (M))|F}P{I|L}E 8 6 58.824 0 0 5.5055 0 0 0 128.96601655136342 128.96601655136342 22.35502013255578 0 0 0 0 0 1.3979400086720375 1.4489700043360187 0 [YT]VS{M(Oxidation (M))|F}P{I|L}E 5.5055 - 515 NaN NaN 213224.6 NaN 18092 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22177 88.928 NaN 552670 35 0 79455 0.261 + 7556 FYAWNFLQ 8 70 544.76231948481 1087.5100860364198 2 545.28515625 MULTI HCD FTMS 0 0 0 22172 34822.2890625 0.5942386387974743 -11 0.25341033935546875 5 Unmodified _FYAWNFLQ_ ENST00000557682.6_1_15:93441140-93441287:+|nuORF 20.871210003555333 0.44023077629866025 1 Q{M(Oxidation (M))|F}{I|L}S[PG]Y{M(Oxidation (M))|F} 8 8 49.998 0 0 4.5975 0 0 130.05069707354943 0 130.05069707354943 0 22.858346322619383 0 0 0 0.3807196863200844 0 1.5044321917401078 0 Q{M(Oxidation (M))|F}{I|L}S[PG]Y{M(Oxidation (M))|F} 4.5975 - 1526 + NaN NaN 173747.4 NaN 18093 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22178 88.931 NaN 117100 35 0 6906 0.261 + 22477 QRERLNQILL 10 59 641.8825694802825 1281.750586027365 2 641.882568359375 MULTI HCD FTMS 0 0 0 22172 101840.1171875 0.4397945172711875 12 -0.29613494873046875 6 Unmodified _QRERLNQILL_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 1.6526216038709556 0.46655611578153744 1 {I|L}E{I|L}CW 5 8 19.949 0 0 1.5563 0 0 131.2333482932723 503.2159517877563 634.4493000810286 0 0 0 0 0 0 0 0 0 {I|L}E{I|L}CW 1.5563 - 28 + NaN NaN 115137.6 NaN 18094 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22179 88.935 NaN 137400 35 0 28839 0.261 + 19587 NTERDKMLL 9 52 560.2928474118323 1118.5711418904646 2 560.795166015625 MULTI HCD FTMS 0 0 0 22172 30485.947265625 0.5630785344378646 1 -0.02982330322265625 7 Unmodified _NTERDKMLL_ REV__ENSG00000147274|ENST00000320676|RBMX;REV__ENSG00000170748|ENST00000306904|RBMXL2;REV__ENST00000567262.5_1_X:135958813-135961586:-|nuORF;REV__nc|ENSG00000147274|P38159-3|RBMX 14.838274106304384 0.23215694253501695 1 {I|L}{I|L} 2 -1 25.217 0 0 2.2544 0 0 874.3903675763687 0 874.3903675763687 0 6.161968799114845 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.2544 + + 76 NaN NaN 102776.1 NaN 18095 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22180 88.938 NaN 77452 35 0 11092 0.262 + 19199 NIHFNSSS 8 50 453.2096818797742 NaN 0 453.2095031738281 PEAK HCD FTMS 0 0 0 22172 23845.8359375 0.5775221622718022 14 -0.34535980224609375 8 Unmodified _NIHFNSSS_ REV__CON__P19012;REV__ENSG00000171346|ENST00000254043|KRT15 2.302733041254933 0.38822285293237185 1 R 1 -1 1.9897 0 0 0.22 0 0 440.14121326951096 305.1360262506469 745.2772395201579 0 0 0 0 0 0 0 0 0 R 0.22 - 1 + NaN NaN 93962 NaN 18096 4082 22172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22182 88.943 NaN 1430900 35 0 185320 0.326 + 30085 VFTYVGALF 9 75 508.77624870781165 1015.5379444824233 2 508.7762756347656 MULTI HCD FTMS 0 0 0 22181 843553.9375 0.608750609343129 3 -0.08254241943359375 1 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 144.65680182435614 1.4474712564967525E-05 1 [{M(Oxidation (M))|F}V]T[YV]GA{I|L}{M(Oxidation (M))|F} 9 0 + 90.37 0 0 8.8988 8.8988 94.798 0 0 0 16.31105604145162 51.70818753952374 16.31105604145162 13.46787486224656 0 2.6989700043360187 1.154901959985743 1.9489700043360187 0 + + [{M(Oxidation (M))|F}V]T[YV]GA{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T[YV]Q{I|L}{M(Oxidation (M))|F};[{I|L}A]Y[YV]GA{I|L}{M(Oxidation (M))|F};[{I|L}A]GVYYA{I|L}{M(Oxidation (M))|F};[{I|L}A]Y[YV]Q{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T[YV]AAV{M(Oxidation (M))|F};[Q{I|L}]VYYA{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}YYA{I|L}{M(Oxidation (M))|F};[{I|L}A]GV{M(Oxidation (M))|F}[YT]V{M(Oxidation (M))|F};[{I|L}A]Y[YV]AAV{M(Oxidation (M))|F} 8.8988;7.5726;6.3812;5.644;5.3992;5.0617;4.5188;4.3455;3.7053;3.3065 +;-;-;-;-;-;-;-;-;- + 786 NaN NaN 325281.3 NaN 18097 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22183 88.947 NaN 909140 35 0 97492 0.261 + 29064 TYFSTPLLL 9 71 527.7948011727692 1053.5750494123383 2 527.7947998046875 MULTI HCD FTMS 0 0 0 22181 585826.8125 0.9881774775259162 3 -0.08254241943359375 2 Unmodified _TYFSTPLLL_ ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2 100.37149154755038 0.004254194004462789 1 [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 9 0 + 81.251 0 0 7.7119 7.7119 96.495 0 0 0 19.499576641467954 16.478174818886373 16.478174818886373 81.25115312462057 0 2.1861818737241734 1.5228787452803376 1.1307196863200843 0 + + [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 7.7119 + + 145 NaN NaN 225210.6 NaN 18098 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22184 88.951 NaN 691430 35 0 68128 0.261 + 15639 LPEEWSQWL 9 79 594.2902572788246 1186.565961624449 2 594.2904663085938 MULTI HCD FTMS 0 0 0 22181 387573.71875 1 0 0 3 Unmodified _LPEEWSQWL_ ENSG00000106211|ENST00000248553|HSPB1 53.40400417844725 0.026808823219830042 1 EWSQW{I|L} 6 3 67.682 0 0 5.7041 0 0 339.1783924787125 0 339.1783924787125 0 50.704642090149875 0 0 0 2.055462187404089 0 0.6421590589602533 0.3054621874040891 + EWSQW{I|L} 5.7041 + + 747 NaN NaN 204772.6 NaN 18099 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22185 88.954 NaN 1088700 35 0 218960 0.261 + 29501 TYVSFPLEL 9 60 534.7843513111387 1067.5541496890773 2 534.7844848632812 MULTI HCD FTMS 0 0 0 22181 488411.1875 0.6513551751477151 -3 0.08612823486328125 4 Unmodified _TYVSFPLEL_ ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22 118.89474601620944 0.0014903111061077812 1 [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L} 9 0 + 99.355 0 0 9.3068 9.3068 97.192 0 0 0 19.621892823592972 80.76127041685373 19.621892823592972 30.445064397082206 0 2.5114393726401687 1.3979400086720375 1.5189301784845295 0 + + [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L};[YT][YG]{I|L}P{I|L}E{I|L};[YT][PA][YV]{I|L}E{I|L};[YT]{[ES]|[DT]|[{I|L}C]}V[{I|L}P]{M(Oxidation (M))|F}{I|L} 9.3068;6.4549;4.0516;3.4064 +;-;-;- + 387 NaN NaN 245834.8 NaN 18100 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22186 88.958 NaN 161500 35 0 13961 0.261 + 28132 TIPDLDWEL 9 49 551.2769790979767 1100.5394052627532 2 551.2767944335938 MULTI HCD FTMS 0 0 0 22181 132247.140625 0.20392105983419972 24 -0.6080780029296875 5 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 43.85829265575387 0.04763305254408404 1 WE{I|L} 3 6 33.188 0 0 3.0156 0 0 654.3232177885106 0 654.3232177885106 0 5.255762612236907 0 0 0 1 0 0 0 + WE{I|L} 3.0156 + + 67 NaN NaN 108135 NaN 18101 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22187 88.961 NaN 243250 35 0 25310 0.261 + 13746 KYPSPFFVF 9 67 566.2977314250414 1130.5809099168828 2 566.2976684570312 MULTI HCD FTMS 0 0 0 22181 93969.7734375 0.5280309471581462 90 -2.3102188110351562 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 32.78568957990786 0.09846250359632436 1 [YN]VV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 3 + 47.101 0 0 4.1661 4.1661 83.374 0 0 0 7.435012637084171 14.704999916446795 7.435012637084171 7.435012637084171 0 1.4247425010840047 1 0 0 [YN]VV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[TA]V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][NP][YV]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.1661;3.5084;3.084;2.9759;2.9544;2.5087;2.5087;1.0251 -;-;+;-;-;-;-;- + 385 NaN NaN 116511.8 NaN 18102 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22188 88.964 NaN 142380 35 0 69365 0.261 -1 0 30 485.1003003501455 484.0930238835455 1 485.1009826660156 MULTI HCD FTMS 0 0 0 22181 85119.4765625 0.5245703188906967 5 -0.1287994384765625 7 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117184.7 NaN 18103 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22189 88.968 NaN 98653 35 0 9766.9 0.261 + 5319 FFLDRDGFLF 10 45 638.8217801607339 1275.6290073882676 2 638.8213500976562 MULTI HCD FTMS 0 0 0 22181 26489.359375 0.39709158792693955 3 -0.08254241943359375 8 Unmodified _FFLDRDGFLF_ ENSG00000178695|ENST00000377474|KCTD12 20.41453444215458 0.3201613495159799 1 E{I|L}{M(Oxidation (M))|F} 3 8 30.445 0 0 2.3867 0 0 868.4115467755875 0 868.4115467755875 0 21.15356566548286 0 0 0 0 0 0.4247425010840047 0 E{I|L}{M(Oxidation (M))|F} 2.3867 - 39 NaN NaN 98739.5 NaN 18104 4083 22181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22191 88.973 NaN 258060 35 0 99651 0.326 -1 0 50 606.3694677211702 1210.7243825091402 2 606.3699951171875 MULTI HCD FTMS 0 0 0 22190 89207.875 0.11935332464407677 42 -1.0619888305664062 1 NaN NaN 1 S{I|L} 2 -1 7.0783 0 0 0.58464 0 0 677.4386902257403 330.14582239322505 1007.5845126189654 0 0 0 0 0 0 0 0 0 S{I|L} 0.58464 - 20 + NaN NaN 119779.9 NaN 18105 4084 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22192 88.977 NaN 236110 35 0 14847 0.261 + 25741 SKVRKSRSW 9 86 567.3302412867215 1132.645929640243 2 567.330078125 MULTI HCD FTMS 0 0 0 22190 80052.4921875 0.4805270757960217 6 -0.138763427734375 2 Unmodified _SKVRKSRSW_ ENSG00000084731|ENST00000264712|KIF3C 3.944395688203298 0.32111559684428237 1 SW 2 7 20.969 0 0 1.8513 0 0 841.5249102084055 0 841.5249102084055 0 6.365006360318688 0 0 0 0 0 0 0 + SW 1.8513 + + 361 + NaN NaN 127353.7 NaN 18106 4084 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22193 88.981 NaN 119750 35 0 10737 0.261 + 7459 FVTWIEGVM 9 43 541.2728088477164 1080.5310647622327 2 541.2720947265625 MULTI HCD FTMS 0 0 0 22190 31343.5625 0.4870840904357395 4 -0.09906768798828125 3 Unmodified _FVTWIEGVM_ ENSG00000122194|ENST00000308192|PLG 14.838274106304384 0.23215694253501695 1 RVERM 5 6 41.682 0 0 3.8576 0 0 391.1749745099625 0 391.1749745099625 0 37.70303756120384 0 0 0 1 0 0 0 RVERM 3.8576 - 32 NaN NaN 104566.3 NaN 18107 4084 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22194 88.984 NaN 102960 35 0 7232.3 0.261 -1 MKKTKVRLM 9 42 575.8430775386402 1149.6716021440802 2 575.8431396484375 MULTI HCD FTMS 0 0 0 22190 32045.84375 0.3080844887687122 10 -0.23657989501953125 4 Oxidation (M) _M(Oxidation (M))KKTKVRLM_ ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-6|KIF21A 1.844237919475145 0.33703635659052655 1 Q{M(Oxidation (M))|F}[CS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}] 8 -1 12.396 0 0 1.0782 0 0 131.19424500318434 0 131.19424500318434 0 8.90092514408778 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}[CS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}] 1.0782 - 99 + NaN NaN 93908.5 NaN 18108 4084 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22195 88.987 NaN 198410 35 0 10025 0.261 + 15415 LPDIYPDLL 9 63 529.7919782497314 1057.5694035662627 2 529.7918701171875 MULTI HCD FTMS 0 0 0 22190 31105.8125 0.14279577370783536 6 -0.138763427734375 5 Unmodified _LPDIYPDLL_ ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39 19.256988751693697 0.19398022840297344 1 Y[DP]{I|L}{I|L} 5 4 32.72 0 0 3.0939 0 0 438.24791152168126 0 438.24791152168126 0 -0.45518919183174944 -0.45518919183174944 0 0 1.2887254899964358 0 0 0 + Y[DP]{I|L}{I|L} 3.0939 + + 214 NaN NaN 122835.1 NaN 18109 4084 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22196 88.991 NaN 51716 35 0 4738.9 0.261 -1 0 31 477.09559422994226 NaN 0 477.2306823730469 PEAK HCD FTMS 0 0 0 22190 4548.67822265625 0.5941326636854034 2 -0.0528106689453125 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89706.4 NaN 18110 4084 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22198 88.996 NaN 1170500 35 0 33875 0.327 -1 0 108 589.3431010203685 1176.671649107537 2 589.3433227539062 MULTI HCD FTMS 0 0 0 22197 1571628.375 0.3434298431124723 36 -0.9020462036132812 1 NaN NaN 1 Q 1 -1 10.841 0 0 0.92135 0 0 546.3264817520424 499.2753084772094 1045.6017902292517 0 0 0 0 0 0.7742275032520141 0 0 0 Q 0.92135 - 308 + NaN NaN 279310 NaN 18111 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22199 89 NaN 698400 35 0 23706 0.261 -1 0 111 597.8562607199011 1193.6979685066021 2 597.8563842773438 MULTI HCD FTMS 0 0 0 22197 739403.9375 0.3862306364172311 30 -0.7582778930664062 2 NaN NaN 1 W 1 -1 11.99 0 0 1.0044 0 0 989.6081227808194 0 989.6081227808194 0 0.9505281042790159 0 0 0 0 0 0 0 W 1.0044 - 315 + NaN NaN 203358.4 NaN 18112 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22200 89.004 NaN 201900 35 0 10045 0.261 -1 0 77 633.369248147757 1264.723943362314 2 633.369384765625 MULTI HCD FTMS 0 0 0 22197 300386.09375 0.5296952898756772 18 -0.43321990966796875 3 NaN NaN 1 {[HG]|PP}N 3 -1 11.241 0 0 0.88881 0 0 0 953.5170314349775 953.5170314349775 3.4987091999308735 0 0 0 0 0.7059771852360797 0 0 0 {[HG]|PP}N 0.88881 - 52 + NaN NaN 110596.1 NaN 18113 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22201 89.007 NaN 288090 35 0 13858 0.263 -1 0 79 500.7986821121983 999.5828112911967 2 500.7987976074219 MULTI HCD FTMS 0 0 0 22197 225537.921875 0.811487076632607 4 -0.0924835205078125 4 NaN NaN 1 A 1 -1 9.732 0 0 0.9736 0 0 105.0795565653686 820.45474330429 925.5342998696586 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.9736 - 9 + NaN NaN 127628.1 NaN 18114 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22202 89.01 NaN 276030 35 0 41285 0.261 + 31833 VYMGLLAVF 9 42 514.7777485443444 1027.5409441554887 2 514.7777099609375 MULTI HCD FTMS 0 0 0 22197 122490.625 0.742808185235671 -4 0.10581207275390625 5 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 79.93452657146344 0.0058735632865073864 1 [YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L}AV{M(Oxidation (M))|F} 9 0 + 72.33 0 0 7.0391 7.0391 95.212 0 0 0 20.391362274856917 42.26789385964942 20.391362274856917 72.32956253501804 0 2.4247425010840047 1.5228787452803376 0 0 + + [YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L}AV{M(Oxidation (M))|F} 7.0391 + + 105 NaN NaN 126148.7 NaN 18115 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22203 89.014 NaN 280030 35 0 81065 0.261 + -1 WEANCPPFT 9 63 561.2401248132105 1120.465696693221 2 561.23974609375 MULTI HCD FTMS 0 0 0 22197 36886.53515625 0.6293616569482693 -4 0.10581207275390625 6 Carbamidomethyl (C) _WEANC(Carbamidomethyl (C))PPFT_ REV__ENSG00000167740|ENST00000301391|CYB5D2;REV__nc|ENSG00000167740|Q8WUJ1-3|CYB5D2 3.5964929083625545 0.32375295897743744 1 VP[{M(Oxidation (M))|F}T] 4 -1 9.838 0 0 0.87802 0 0 658.2186701813054 0 658.2186701813054 0 2.3906907196830947 0 0 0 0.3807196863200844 0 0 0 VP[{M(Oxidation (M))|F}T] 0.87802 - 28 + NaN NaN 124959.2 NaN 18116 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22204 89.017 NaN 128600 35 0 9788.6 0.261 + 26256 SQLHRLRQL 9 55 575.8430775386402 1149.6716021440802 2 575.8416137695312 MULTI HCD FTMS 0 0 0 22197 28873.779296875 0.277588682104785 11 -0.2627410888671875 7 Unmodified _SQLHRLRQL_ ENSG00000152818|ENST00000367545|UTRN;ENSG00000198947|ENST00000357033|DMD;ENST00000465299.1_3_6:145157593-145158348:+|nuORF;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-9|DMD;nc|ENSG00000198947|P11532|DMD 2.0597508629832335 0.3354026079994024 1 Q{M(Oxidation (M))|F}[CS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}] 8 6 30.138 0 0 2.6214 0 0 131.1930360828017 0 131.1930360828017 0 25.53395642852614 0 0 0 0 0 0.3494850021680094 0.4247425010840047 Q{M(Oxidation (M))|F}[CS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}] 2.6214 - 146 + NaN NaN 102988 NaN 18117 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22205 89.02 NaN 159690 35 0 14098 0.261 + 31421 VYASFALCMF 10 64 584.2638578499044 1166.5131627666087 2 584.264404296875 MULTI HCD FTMS 0 0 0 22197 50213.5703125 0.799719372568625 8 -0.18645477294921875 8 Oxidation (M) _VYASFALCM(Oxidation (M))F_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 52.268347100219714 0.06954005568441465 1 [Y{I|L}]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 3 + 64.618 0 0 5.5394 5.5394 85.388 0 0 0 23.622002453248108 38.67599686953518 23.622002453248108 6.932342842105896 0 1.3807196863200843 2 0.75 0 [Y{I|L}]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][YQ]A{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][KP]{[{M(Oxidation (M))|F}C]|[YS]}C{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][YQ]A[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][YQ]{[WT]|[RM]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5394;4.9451;3.1175;2.6467;2.4166;2.1832 -;-;-;-;-;- 175 NaN NaN 109035.8 NaN 18118 4085 22197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22207 89.025 NaN 379460 35 0 19134 0.326 + 12007 KGPNVNKLN 9 84 492.28538407462605 982.5562152160521 2 492.28546142578125 MULTI HCD FTMS 0 0 0 22206 291656.6875 0.7357598208573761 3 -0.06273651123046875 1 Unmodified _KGPNVNKLN_ REV__ENSG00000145794|ENST00000503335|MEGF10;REV__ENST00000515622.1_1_5:126783361-126801299:+|nuORF 6.723162845929126 0.3000504726104499 1 {I|L}N 2 -1 13.188 0 0 1.3422 0 0 737.4133167951187 0 737.4133167951187 0 1.0798828748732525 0 0 0 0 0 0 0 {I|L}N 1.3422 + + 38 NaN NaN 160836.8 NaN 18119 4086 22206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22208 89.03 NaN 89309 35 0 16338 0.261 + 31039 VSSPFIVSL 9 31 474.77369937741815 947.5328458216363 2 474.7734069824219 MULTI HCD FTMS 0 0 0 22206 41777.91796875 0.021519097331766796 29 -0.7285308837890625 2 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 25.399314129420986 0.14091189997036632 1 {I|L}W{I|L} 3 7 35.445 0 0 3.7408 0 0 517.2547474591812 0 517.2547474591812 0 25.243500300354142 0 0 0 0.9247425010840047 0 0 0 {I|L}W{I|L} 3.7408 - 28 NaN NaN 111752.7 NaN 18120 4086 22206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22209 89.034 NaN 92878 35 0 7298.3 0.261 + 5320 FFLDRDGFLF 10 48 638.8217801607339 1275.6290073882676 2 638.8215942382812 MULTI HCD FTMS 0 0 0 22206 26396.076171875 0.3956932160474453 6 -0.132781982421875 3 Unmodified _FFLDRDGFLF_ ENSG00000178695|ENST00000377474|KCTD12 8.155526934196011 0.43213520406898465 1 {I|L}{M(Oxidation (M))|F} 2 8 19.464 0 0 1.5258 0 0 997.4684925763687 0 997.4684925763687 0 12.474250108400469 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.5258 + + 26 NaN NaN 113947.7 NaN 18121 4086 22206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22211 89.039 NaN 822150 35 0 308080 0.327 + 1836 CSYGCSSC 8 46 405.11826224959816 808.2219715659963 2 405.1190185546875 MULTI HCD FTMS 0 0 0 22210 290384.25 0.27565349928181676 7 -0.1706390380859375 1 Unmodified _CSYGCSSC_ REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1 0 0.5419923896992614 1 V 1 -1 8.4949 0 0 1.0511 0 0 506.1117553568151 200.01880823306877 706.1305635898839 0 0 0 0 0 0.5 0 0 0 V 1.0511 - 10 + NaN NaN 217209.7 NaN 18122 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22212 89.043 NaN 487490 35 0 61901 0.261 -1 CMDGALLVNTM 11 78 620.7725151260314 1239.5304773188627 2 620.7726440429688 MULTI HCD FTMS 0 0 0 22210 239598.109375 0.4907162425913084 4 -0.09273529052734375 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))DGALLVNTM_ ENST00000419794.1_1_9:34318953-34319253:+|nuORF 28.494509381512117 0.21104904156558496 1 [YN]SV{I|L}[DC]VN 9 -1 68.79 0 0 5.5497 0 0 0 229.06167017154533 229.06167017154533 39.05333107397176 0 0 0 0 1.7302046884880937 2 0.3494850021680094 0 [YN]SV{I|L}[DC]VN 5.5497 - 371 + NaN NaN 170504.4 NaN 18123 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22213 89.047 NaN 430250 35 0 69203 0.261 -1 0 81 611.3718650388877 610.3645885722876 1 611.3562622070312 MULTI HCD FTMS 0 0 0 22210 27382.921875 0.06326175055700801 -22 0.5129852294921875 3 NaN NaN 1 K 1 -1 0.71334 0 0 0.11687 0 0 108.06531596662201 371.1706637018188 479.2359796684408 0 0 0 0 0 0 0 0 0 K 0.11687 - 2 + NaN NaN 145609.5 NaN 18124 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22214 89.05 NaN 480260 35 0 120140 0.261 + 20377 NYVEDIPFL 9 63 555.2793796271978 1108.5442063211956 2 555.2794189453125 MULTI HCD FTMS 0 0 0 22210 113287.7109375 0.5598010634532675 4 -0.09273529052734375 4 Unmodified _NYVEDIPFL_ ENSG00000162836|ENST00000583509|ACP6;nc|ENSG00000162836|Q9NPH0-2|ACP6 70.33199760932243 0.0089807860198535 1 [YN]VED{I|L}P{M(Oxidation (M))|F}{I|L} 9 0 + 75.041 0 0 6.7693 6.7693 86.958 0 0 0 5.421203825974089 16.478174818886366 5.421203825974089 5.421203825974089 0 2.555462187404089 1.154901959985743 0.3494850021680094 0.3252574989159953 + + [YN]VED{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}ND{I|L}P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MN]M{I|L}P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[C(Carbamidomethyl (C))C]{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}GGD{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[NP]M{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[{I|L}V]EP{M(Oxidation (M))|F}N;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[C(Carbamidomethyl (C))C]K[QT]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[{M(Oxidation (M))|F}V]EV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MN]MK[QT]{I|L} 6.7693;6.2803;5.8471;5.8252;5.1562;5.0324;3.1461;3.0366;2.9082;2.765 +;-;-;-;-;-;-;-;-;- + 474 NaN NaN 153369.5 NaN 18125 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22215 89.053 NaN 399450 35 0 41681 0.261 + 29216 TYLEGECLELL 11 66 641.8155120941216 1281.616471255043 2 641.8160400390625 MULTI HCD FTMS 0 0 0 22210 139007.265625 0.350384362898567 -14 0.3472442626953125 5 Unmodified _TYLEGECLELL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 96.36657018975838 0.015470569860761748 1 EWC{I|L}E{I|L}{I|L} 7 5 85.878 0 0 6.7007 0 0 377.1947193830094 0 377.1947193830094 0 80.5166096705586 0 0 0 2.7302046884880937 0 1.110924374808178 0 EWC{I|L}E{I|L}{I|L} 6.7007 - 340 NaN NaN 147005.6 NaN 18126 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22216 89.057 NaN 163630 35 0 19889 0.262 + 17229 LYNVISLEF 9 50 549.2979275063364 1096.5813020794726 2 549.2984619140625 MULTI HCD FTMS 0 0 0 22210 75268.890625 0.6820647272156797 12 -0.2986297607421875 6 Unmodified _LYNVISLEF_ ENSG00000089094|ENST00000377071|KDM2B;ENSG00000173120|ENST00000529006|KDM2A;ENST00000528380.1_1_11:66975039-66982918:+|nuORF;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-5|KDM2B;nc|ENSG00000173120|Q9Y2K7-3|KDM2A 21.536976647645854 0.1742816388551942 1 DNM{I|L}S{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 8 3 54.716 0 0 4.9897 0 0 129.14466985466635 0 129.14466985466635 0 42.66502535772155 0 0 0 2.6747425010840047 0 0 0 DNM{I|L}S{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 4.9897 - 130 + NaN NaN 108569.4 NaN 18127 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22217 89.06 NaN 313960 35 0 42374 0.261 + 11116 IYIGLLQQL 9 54 530.8242695952212 1059.6339862572422 2 530.82373046875 MULTI HCD FTMS 0 0 0 22210 104349.5703125 0.442180538242345 -2 0.042877197265625 7 Unmodified _IYIGLLQQL_ ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS 85.35673624503755 0.00464763827098139 1 [Y{I|L}]{I|L}G{I|L}{I|L}QQ{I|L} 9 0 + 83.835 0 0 7.9117 7.9117 91.291 0 0 0 22.376430167995878 73.03273116069214 22.376430167995878 9.208187539523749 0 2.274227503252014 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}G{I|L}{I|L}QQ{I|L};[Y{I|L}]{I|L}G{I|L}{I|L}[AG]Q{I|L};[Y{I|L}]{I|L}G{I|L}{I|L}Q[AG]{I|L};[Y{I|L}]{I|L}G{I|L}{I|L}[AG][AG]{I|L} 7.9117;7.0427;7.0427;6.1778 +;-;-;- + 147 NaN NaN 128578 NaN 18128 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22218 89.063 NaN 143860 35 0 16674 0.261 + 12785 KYDVLFALF 9 56 558.3103241922371 1114.606095451274 2 558.3108520507812 MULTI HCD FTMS 0 0 0 22210 41994.3046875 0.007080917397821362 49 -1.199127197265625 8 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 {I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5 4 57.708 0 0 5.1774 0 0 505.25230605293126 0 505.25230605293126 0 39.82754857983869 0 0 0 2.2134679910804405 0 0 0 + {I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5.1774 + + 150 NaN NaN 115053.6 NaN 18129 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22219 89.067 NaN 98559 35 0 9733.6 0.261 + 8302 GYADIVQLL 9 39 496.2764359399022 990.5383189466045 2 496.2760009765625 MULTI HCD FTMS 0 0 0 22210 18354.603515625 0.0050270243701944555 25 -0.6502304077148438 9 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 26.268140514670165 0.13340543277302316 1 {I|L}VQ{I|L}{I|L} 5 4 49.68 0 0 5.0155 0 0 406.14790541816564 0 406.14790541816564 0 46.18562527100117 0 0 0 1.9247425010840047 0 0 0 + {I|L}VQ{I|L}{I|L} 5.0155 + + 99 NaN NaN 90471.1 NaN 18130 4087 22210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22221 89.072 NaN 659840 35 0 87506 0.327 + 7553 FYATSIFQL 9 71 545.2847654372649 1088.5549779413298 2 545.2844848632812 MULTI HCD FTMS 0 0 0 22220 237971.65625 0.7464010236791975 4 -0.08652496337890625 1 Unmodified _FYATSIFQL_ ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 99.75527289724121 0.004270341300239591 1 [Y{M(Oxidation (M))|F}]ATS{I|L}{M(Oxidation (M))|F}Q{I|L} 9 0 + 79.708 0 0 7.3224 7.3224 90.372 0 0 0 4.137342758552691 46.827665712010216 4.137342758552691 9.208187539523749 0 2.473197507588033 0 1.416386562212267 0 + + [Y{M(Oxidation (M))|F}]ATS{I|L}{M(Oxidation (M))|F}Q{I|L};[Y{M(Oxidation (M))|F}]ATS{I|L}{M(Oxidation (M))|F}[AG]{I|L};[Y{M(Oxidation (M))|F}]ATS{I|L}Q{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]ATS{I|L}{[VA]|[{I|L}G]}A{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]ATS{I|L}[AG]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}H[R{M(Oxidation (M))|F}]Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}H[R{M(Oxidation (M))|F}][AG]{I|L};[Y{M(Oxidation (M))|F}]A[KS][DV]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}YY{I|L};[Y{M(Oxidation (M))|F}]A{M(Oxidation (M))|F}[TA]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.3224;6.4765;5.5255;4.7682;4.3299;1.8346;0.98372;0.85364;0.60364;0.51559 +;-;-;-;-;-;-;-;-;- + 1948 NaN NaN 179973.9 NaN 18131 4088 22220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22222 89.076 NaN 241580 35 0 23954 0.261 + 3671 ELPEQFFQL 9 60 575.7925509527348 1149.5705489722695 2 575.7922973632812 MULTI HCD FTMS 0 0 0 22220 99532.84375 0.12103778606167136 -13 0.3310089111328125 2 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 51.41523569358685 0.02959097413485123 1 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 60.997 0 0 5.306 5.306 86.768 0 0 0 9.449237304209888 49.52607112299283 9.449237304209888 9.208187539523749 0 2.2302046884880937 0 1.1861818737241734 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}M[KQ]{NN|[MP]|[D{I|L}]|[EV]}Q{I|L} 5.306;4.505;4.505;2.54 +;-;-;- + 428 NaN NaN 133032 NaN 18132 4088 22220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22223 89.08 NaN 112700 35 0 8172.6 0.264 + 19070 NEKKKLMTQF 10 52 422.90148684746055 NaN 0 422.9162902832031 PEAK HCD FTMS 0 0 0 22220 6473.65771484375 0.2942032855665728 -15 0.38037109375 3 Unmodified _NEKKKLMTQF_ REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF 1.7422754331352037 0.33869314273211465 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98849.1 NaN 18133 4088 22220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22224 89.083 NaN 65104 35 0 5786.7 0.261 + 32652 WNFLFEEPGLG 11 40 436.8797700918193 1307.617480875658 3 437.2151184082031 MULTI HCD FTMS 0 0 0 22220 24726.53515625 0.586342991391864 12 -0.28844451904296875 4 Unmodified _WNFLFEEPGLG_ ENST00000373204.5_1_1:36387027-36387114:+|nuORF 0.5059551277355931 0.4167017191902429 1 N 1 10 3.0989 0 0 0.23699 0 0 871.6737685727268 318.88535486392817 1190.559123436655 0 0 0 0 0 0 0 0 0 + N 0.23699 + + 2 + NaN NaN 92299.8 NaN 18134 4088 22220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22226 89.088 NaN 1205300 35 0 273870 0.326 + 29502 TYVSFPLEL 9 66 534.7843513111387 1067.5541496890773 2 534.7844848632812 MULTI HCD FTMS 0 0 0 22225 645629.75 0.8610250740659489 3 -0.07004547119140625 1 Unmodified _TYVSFPLEL_ ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22 131.26759243768294 0.0005280990274065272 1 [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L} 9 0 + 103.29 0 0 9.6751 9.6751 97.731 0 0 0 19.621892823592972 90.09881272697172 19.621892823592972 34.13425655227236 0 2.5356668758921828 1.3979400086720375 1.5356668758921828 0 + + [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L};[YT][YG]{I|L}P{I|L}E{I|L};[YT][PA][YV]{I|L}E{I|L};[YT]{[ES]|[DT]|[{I|L}C]}V[{I|L}P]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}P{I|L}[YG][YT]{I|L};{[QN]|[E{I|L}]|[KN]}P{I|L}[YG]{I|L}[YT] 9.6751;6.4776;4.3019;3.6114;1.272;0.21936 +;-;-;-;-;- + 348 NaN NaN 280145.3 NaN 18135 4089 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22227 89.093 NaN 486050 35 0 47041 0.261 + 15640 LPEEWSQWL 9 69 594.2902572788246 1186.565961624449 2 594.290283203125 MULTI HCD FTMS 0 0 0 22225 193716.921875 0.4998195504581024 6 -0.14394378662109375 2 Unmodified _LPEEWSQWL_ ENSG00000106211|ENST00000248553|HSPB1 70.33199760932243 0.0089807860198535 1 EWSQW{I|L} 6 3 65.553 0 0 5.5246 0 0 339.179491111525 0 339.179491111525 0 49.95472173587969 0 0 0 2.079689690656103 0 0.7059771852360797 0.3054621874040891 + EWSQW{I|L} 5.5246 + + 373 NaN NaN 153933.8 NaN 18136 4089 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22228 89.096 NaN 492080 35 0 58438 0.261 + 29065 TYFSTPLLL 9 58 527.7948011727692 1053.5750494123383 2 527.7948608398438 MULTI HCD FTMS 0 0 0 22225 254292.75 0.42894309868776864 9 -0.229400634765625 3 Unmodified _TYFSTPLLL_ ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2 78.14939416004806 0.006451203201226903 1 [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 9 0 + 80.173 0 0 7.6096 7.6096 96.323 0 0 0 15.724374561892418 66.96780933001143 15.724374561892418 80.1727437142231 0 2.1989700043360187 1.5228787452803376 1.1861818737241734 0 + + [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 7.6096 + + 150 NaN NaN 163712.5 NaN 18137 4089 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22229 89.1 NaN 438940 35 0 73283 0.261 + 30086 VFTYVGALF 9 54 508.77624870781165 1015.5379444824233 2 508.7762145996094 MULTI HCD FTMS 0 0 0 22225 195563.65625 0.14112849174811387 9 -0.229400634765625 4 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 93.88341677533236 0.004424206486747196 1 [{M(Oxidation (M))|F}V]T[YV]GA{I|L}{M(Oxidation (M))|F} 9 0 + 66.661 0 0 6.5641 6.5641 89.94 0 0 0 4.137342758552691 47.6642523857511 4.137342758552691 9.973024840566467 0 2.1989700043360187 0 1.579689690656103 0 + + [{M(Oxidation (M))|F}V]T[YV]GA{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T[YV]Q{I|L}{M(Oxidation (M))|F};[Q{I|L}]VYYA{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}YYA{I|L}{M(Oxidation (M))|F} 6.5641;5.582;4.5188;4.127 +;-;-;- + 251 NaN NaN 143623.9 NaN 18138 4089 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22230 89.103 NaN 124570 35 0 20063 0.261 + 35203 YVLGVYSSYL 10 53 582.3020416479612 1162.5895303627224 2 582.3028564453125 MULTI HCD FTMS 0 0 0 22225 31540.599609375 0.29264606563897355 -6 0.1452789306640625 5 Unmodified _YVLGVYSSYL_ REV__ENSG00000109066|ENST00000335464|TMEM104;REV__ENST00000584246.1_1_17:72773463-72781743:+|nuORF;REV__nc|ENSG00000109066|Q8NE00-2|TMEM104 26.88365393820708 0.25965138844209146 1 [YV]SAA{I|L}[YT]Y{I|L} 10 -1 + 66.092 0 0 5.6849 5.6849 88.899 0 0 0 40.12308915409547 2.627108334148005 2.627108334148005 11.86202283646351 0 1.9436726795685342 2 0 0 [YV]SAA{I|L}[YT]Y{I|L};[YV][TA]G{I|L}[YT]Y{I|L};[YV]{I|L}[QT][YT]Y{I|L};[YV][QT]{I|L}[YT]Y{I|L};{[ET]|[MV]}{[QS]|[NT]}{I|L}{I|L}G[TA]M{I|L};{[ET]|[MV]}{[QS]|[NT]}{I|L}[QT]{I|L}M{I|L};{[ET]|[MV]}{[QS]|[NT]}{I|L}{I|L}[QT]M{I|L} 5.6849;4.6646;4.6585;4.3617;1.6809;1.671;1.3742 -;-;-;-;-;-;- 151 + NaN NaN 106776.3 NaN 18139 4089 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22231 89.106 NaN 72480 35 0 15383 0.263 + 2075 DEQAKSHRDDR 11 40 452.88055713304715 NaN 0 452.8810729980469 PEAK HCD FTMS 0 0 0 22225 15667.001953125 0.5352934789796925 -5 0.11554718017578125 6 Unmodified _DEQAKSHRDDR_ ENSG00000154309|ENST00000675850|DISP1 0.40826533853263924 0.34096201227758716 1 G 1 11 2.2185 0 0 0.24548 0 0 696.7453844303537 146.95752893619377 843.7029133665475 0 0 0 0 0 0 0 0 0 G 0.24548 - 2 + NaN NaN 100455.8 NaN 18140 4089 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22233 89.111 NaN 317120 35 0 124320 0.327 -1 0 71 606.3694677211702 1210.7243825091402 2 606.3698120117188 MULTI HCD FTMS 0 0 0 22232 78381.453125 0.10486839890427399 48 -1.17828369140625 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.0543 0 0 1045.676910440584 0 1045.676910440584 0 5.774509799928715 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0543 - 7 + NaN NaN 140944.9 NaN 18141 4090 22232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22234 89.116 NaN 121450 35 0 10058 0.261 + 20912 PKMKFYQNF 9 39 601.8046209852591 NaN 0 601.790771484375 PEAK HCD FTMS 0 0 0 22232 13770.724609375 1 0 0 2 Unmodified _PKMKFYQNF_ REV__ENSG00000139163|ENST00000266517|ETNK1;REV__nc|ENSG00000139163|Q9HBU6|ETNK1 4.3292370932331545 0.2742679634796037 1 NP 2 -1 10.969 0 0 0.91288 0 0 165.10355241798067 822.3524874322874 987.4560398502681 0 0 0 0 0 0 0 0 0 NP 0.91288 - 97 + NaN NaN 95248.4 NaN 18142 4090 22232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22235 89.12 NaN 160270 35 0 11250 0.261 + 35063 YTRKAKRR 8 62 539.8326966871316 1077.650840441063 2 539.8328247070312 MULTI HCD FTMS 0 0 0 22232 35356.61328125 0.1883442861218955 -7 0.16849517822265625 3 Unmodified _YTRKAKRR_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 2.577480529830294 0.5381683276125971 1 [YT]VD 4 -1 28.416 0 0 2.6369 0 0 0 596.4217363658479 596.4217363658479 5.263392773898445 0 0 0 0 0 2 0 0 [YT]VD 2.6369 - 90 NaN NaN 111829.6 NaN 18143 4090 22232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22236 89.123 NaN 75904 35 0 6654 0.261 -1 IYMDTLNIFM 10 35 638.8013362822916 1275.588119631383 2 638.8212280273438 MULTI HCD FTMS 0 0 0 22232 23127.671875 0.7465534995412442 1 -0.0199127197265625 4 Oxidation (M) _IYM(Oxidation (M))DTLNIFM_ ENSG00000165678|ENST00000372134|GHITM 8.155526934196011 0.43213520406898465 1 {M(Oxidation (M))|F}M 2 -1 25.969 0 0 2.0359 0 0 979.4687786762614 0 979.4687786762614 0 8.010299956639813 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}M 2.0359 + + 9 NaN NaN 102638.8 NaN 18144 4090 22232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22237 89.126 NaN 59447 35 0 5132.5 0.261 -1 IYMTEWLEF 9 31 624.2864352635826 1246.558317593965 2 624.2864990234375 MULTI HCD FTMS 0 0 0 22232 10658.9384765625 0.37190100469720067 1 -0.0199127197265625 5 Oxidation (M) _IYM(Oxidation (M))TEWLEF_ ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF 10.073929032068715 0.27331982688540024 1 W{I|L}[{M(Oxidation (M))|F}E] 4 -1 23.188 0 0 1.8601 0 0 653.2725697248062 0 653.2725697248062 0 23.187587626244124 0 0 0 0.8494850021680094 0 0 0 W{I|L}[{M(Oxidation (M))|F}E] 1.8601 + + 19 NaN NaN 93781 NaN 18145 4090 22232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22239 89.131 NaN 770040 35 0 25350 0.326 -1 0 101 589.3431010203685 1176.671649107537 2 589.3433837890625 MULTI HCD FTMS 0 0 0 22238 1050879.375 0.22963656334238874 42 -1.0448455810546875 1 NaN NaN 1 Q 1 -1 11.114 0 0 0.94454 0 0 546.326158684161 499.2759336150035 1045.6020922991645 0 0 0 0 0 0.7134679910804405 0 0 0 Q 0.94454 - 317 + NaN NaN 202543.5 NaN 18146 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22240 89.136 NaN 439560 35 0 28961 0.261 -1 0 97 597.8562607199011 1193.6979685066021 2 597.8565673828125 MULTI HCD FTMS 0 0 0 22238 441469.53125 0.23060339466139804 36 -0.9326400756835938 2 NaN NaN 1 W 1 -1 12.474 0 0 1.045 0 0 989.6086263208584 0 989.6086263208584 0 3.6227313277985456 0 0 0 0 0 0 0 W 1.045 - 390 + NaN NaN 151647.3 NaN 18147 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22241 89.14 NaN 200230 35 0 16707 0.261 -1 0 72 619.8697049488608 1237.7248569645215 2 619.8695678710938 MULTI HCD FTMS 0 0 0 22238 200648.609375 0.09043351231615847 -40 0.97564697265625 3 NaN NaN 1 D 1 -1 5.9691 0 0 0.48226 0 0 105.07905375810567 1014.5734346979124 1119.652488456018 0 0 0 0 0 0 0 0.3494850021680094 0 D 0.48226 - 18 + NaN NaN 128200.6 NaN 18148 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22242 89.143 NaN 507680 35 0 111100 0.261 + 10480 IPDQLGYLVL 10 63 565.8267471224575 1129.638941311715 2 565.8269653320312 MULTI HCD FTMS 0 0 0 22238 186934.453125 0.12689740379208375 -10 0.241424560546875 4 Unmodified _IPDQLGYLVL_ ENSG00000188186|ENST00000341942|LAMTOR4;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENST00000474831.5_1_7:99746595-99751042:+|nuORF 13.614867670302875 0.3837631382804675 1 {I|L}M{I|L}V{I|L} 5 6 42.959 0 0 3.8029 0 0 542.262498924025 0 542.262498924025 0 12.993405494535821 0 0 0 1 0 0 0 {I|L}M{I|L}V{I|L} 3.8029 - 148 NaN NaN 163634.9 NaN 18149 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22243 89.147 NaN 159190 35 0 5664.1 0.261 -1 LMNLYKRVF 9 67 600.3340342714716 1198.6535156097432 2 600.3341064453125 MULTI HCD FTMS 0 0 0 22238 62187.3203125 0.21379858439143345 41 -1.03204345703125 5 Oxidation (M) _LM(Oxidation (M))NLYKRVF_ ENSG00000167721|ENST00000301364|TSR1 2.0597508629832335 0.3354026079994024 1 W 1 -1 5.4846 0 0 0.45756 0 0 620.3755817872694 389.1793612115844 1009.5549429988539 0 0 0 0 0 0 0 0 0 W 0.45756 - 45 + NaN NaN 123668.2 NaN 18150 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22244 89.15 NaN 307770 35 0 61076 0.261 + 26758 SYFPTVPGVYI 11 58 621.8247044826078 1241.6348560320155 2 621.82373046875 MULTI HCD FTMS 0 0 0 22238 75987.8203125 0.5602736310870832 -6 0.13561248779296875 6 Unmodified _SYFPTVPGVYI_ ENSG00000136068|ENST00000295956|FLNB;ENST00000477629.1_1_3:58135593-58136214:+|nuORF;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 32.78568957990786 0.18341249061758555 1 [YN]{I|L}KK[TP]C 8 9 29.9 0 0 2.4081 0 0 0 291.13669794998003 291.13669794998003 19.09765299137284 0 0 0 0 1.274227503252014 1.5228787452803376 0 0.3054621874040891 [YN]{I|L}KK[TP]C 2.4081 - 224 NaN NaN 130948.9 NaN 18151 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22245 89.153 NaN 63900 35 0 4446.3 0.261 -1 IYMTEWLEF 9 34 624.2864352635826 1246.558317593965 2 624.7890014648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _IYM(Oxidation (M))TEWLEF_ ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF 13.90604991867851 0.24021115267848145 1 W{I|L}E{M(Oxidation (M))|F} 4 -1 39.68 0 0 3.1832 0 0 653.2746449201187 0 653.2746449201187 0 38.571231544599485 0 0 0 0.9247425010840047 0 0 0 W{I|L}E{M(Oxidation (M))|F} 3.1832 + + 14 NaN NaN 108176.5 NaN 18152 4091 22238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22247 89.158 NaN 292510 35 0 14714 0.327 -1 0 83 633.3694581930936 1264.724363452987 2 633.369384765625 MULTI HCD FTMS 0 0 0 22246 458684.8125 0.34502038965389725 -15 0.3742523193359375 1 NaN NaN 1 Y 1 -1 6.0257 0 0 0.47644 0 0 251.2070427516183 847.4530733697874 1098.6601161214057 0 0 0 0 0 0.3807196863200844 0 0 0 Y 0.47644 - 40 + NaN NaN 140098.4 NaN 18153 4092 22246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22248 89.163 NaN 203950 35 0 35493 0.262 + 31834 VYMGLLAVF 9 31 514.7777485443444 1027.5409441554887 2 514.7778930664062 MULTI HCD FTMS 0 0 0 22246 80084.015625 0.4856458387145251 3 -0.0738983154296875 2 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 45.7499826716795 0.03894913563566938 1 {I|L}AV{M(Oxidation (M))|F} 4 5 51.938 0 0 5.0546 0 0 579.2726049722932 0 579.2726049722932 0 51.938200260161125 0 0 0 2 0 0 0 + {I|L}AV{M(Oxidation (M))|F} 5.0546 + + 46 + NaN NaN 108179.7 NaN 18154 4092 22246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22249 89.167 NaN 172060 35 0 42995 0.261 + -1 NDVFMWFF 8 52 561.2401248132105 1120.465696693221 2 561.2409057617188 MULTI HCD FTMS 0 0 0 22246 17204.2890625 0.29354125631822464 3 -0.0738983154296875 3 Oxidation (M) _NDVFM(Oxidation (M))WFF_ REV__ENSG00000142182|ENST00000628202|DNMT3L;REV__nc|ENSG00000142182|Q9UJW3-2|DNMT3L 6.354104778181461 0.5325651638111438 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.3341 0 0 808.3183405914616 0 808.3183405914616 0 6.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.3341 + + 52 + NaN NaN 112706 NaN 18155 4092 22246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22250 89.17 NaN 52007 35 0 5486 0.261 + 10567 IPISWTCDL 9 31 524.262492374328 1046.5104318154558 2 524.262451171875 MULTI HCD FTMS 0 0 0 22246 14307.7314453125 0.5004937600872549 1 -0.02392578125 4 Unmodified _IPISWTCDL_ ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 3.944395688203298 0.32111559684428237 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88844.3 NaN 18156 4092 22246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22251 89.174 NaN 45168 35 0 8261.4 0.261 -1 ERMWRNRNP 9 29 637.8121236646053 1273.6096943960106 2 637.8096313476562 MULTI HCD FTMS 0 0 0 22246 18938.240234375 0.19698286299824802 -21 0.49855804443359375 5 Oxidation (M) _ERM(Oxidation (M))WRNRNP_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|62|1|sense 0.45834013312273997 0.3475424938045562 1 V 1 -1 3.9794 0 0 0.31245 0 0 555.7595489876106 615.7603853815061 1171.5199343691168 0 0 0 0 0 0 0 0 0 V 0.31245 - 1 + NaN NaN 99723.8 NaN 18157 4092 22246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22252 89.177 NaN 62260 35 0 3733.8 0.261 + 17463 LYSMMKKHEE 10 40 648.3079833984375 NaN 0 648.3079833984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYSMMKKHEE_ ENSG00000152127|ENST00000281923|MGAT5 8.745405648335112 0.33269943387702366 1 N 1 10 6.9897 0 0 0.53991 0 0 294.1581620099624 883.3627413385374 1177.5209033484998 0 0 0 0 0 0 0 0 0 N 0.53991 - 10 + NaN NaN 90788.7 NaN 18158 4092 22246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22254 89.182 NaN 901880 35 0 83177 0.327 -1 0 94 611.3718650388877 610.3645885722876 1 611.3564453125 MULTI HCD FTMS 0 0 0 22253 84112.0546875 0.1943209657014749 -16 0.3981781005859375 1 NaN NaN 1 Q 1 -1 1.9897 0 0 0.32599 0 0 112.09619975568451 367.19758020572505 479.29377996140954 0 0 0 0 0 0 0 0 0 Q 0.32599 - 17 + NaN NaN 227909.6 NaN 18159 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22255 89.187 NaN 384470 35 0 23163 0.262 + 8263 GTKTGKKTLQ 10 76 531.3193188011114 1060.6240846690227 2 531.3191528320312 MULTI HCD FTMS 0 0 0 22253 210031.25 0.6245776945007518 -6 0.14357757568359375 2 Unmodified _GTKTGKKTLQ_ ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217 6.2057823575117 0.44245551207394906 1 {I|L}Q[Q{I|L}] 4 8 12.123 0 0 1.143 0 0 560.3287784533815 0 560.3287784533815 0 1.9458914272792391 0 0 0 0 0 0 0.5467716608392861 {I|L}Q[Q{I|L}] 1.143 - 87 + NaN NaN 152648.3 NaN 18160 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22256 89.191 NaN 360560 35 0 136400 0.263 + 1837 CSYGCSSC 8 40 405.11826224959816 808.2219715659963 2 405.11895751953125 MULTI HCD FTMS 0 0 0 22253 152209.125 0.14448778791850267 13 -0.34223175048828125 3 Unmodified _CSYGCSSC_ REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1 0 0.5419923896992614 1 [C(Carbamidomethyl (C))M]G 3 -1 5.0617 0 0 0.62627 0 0 0 457.10570504671824 457.10570504671824 1.8398839264729716 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]G 0.62627 - 6 NaN NaN 132274.9 NaN 18161 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22257 89.194 NaN 168450 35 0 21406 0.261 + -1 FLGTFVMNLI 10 56 585.8135793710412 NaN 0 585.8130493164062 PEAK HCD FTMS 0 0 0 22253 89574.953125 0.4431295063820097 85 -2.2068328857421875 4 Oxidation (M) _FLGTFVM(Oxidation (M))NLI_ REV__ENSG00000102001|ENST00000323022|CACNA1F;REV__nc|ENSG00000102001|O60840-4|CACNA1F;REV__nc|ENSG00000102001|O60840-5|CACNA1F;REV__nc|ENSG00000102001|O60840-6|CACNA1F;REV__nc|ENSG00000102001|O60840-7|CACNA1F;REV__nc|ENSG00000102001|O60840|CACNA1F 21.536976647645854 0.26818477760186155 1 {I|L}N 2 -1 18.711 0 0 1.5998 0 0 131.09645518292524 808.3666475885374 939.4631027714627 0 0 0 0 0 0.5 0 0 0.4247425010840047 {I|L}N 1.5998 - 19 + NaN NaN 105150.5 NaN 18162 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22258 89.198 NaN 215710 35 0 48916 0.262 + 738 ARLEGRVSL 9 45 500.7986821121983 999.5828112911967 2 500.79901123046875 MULTI HCD FTMS 0 0 0 22253 39663.875 0.14271090956273869 12 -0.30593109130859375 5 Unmodified _ARLEGRVSL_ ENST00000537561.5_1_3:131104193-131104271:+|nuORF 12.240655878213236 0.2545997876781172 1 KEVS{I|L} 5 5 34.865 0 0 3.4879 0 0 425.2340260236344 0 425.2340260236344 0 27.073259432077563 0 0 0 0 0 0.3807196863200844 0 KEVS{I|L} 3.4879 - 89 NaN NaN 115811.1 NaN 18163 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22259 89.201 NaN 90037 35 0 7195.8 0.261 + 28133 TIPDLDWEL 9 42 551.2769790979767 1100.5394052627532 2 551.2777099609375 MULTI HCD FTMS 0 0 0 22253 21966.453125 0.03387160116187403 34 -0.8817977905273438 6 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 36.12702656103203 0.08312389501731911 1 WE{I|L} 3 6 27.435 0 0 2.4929 0 0 654.3224354474625 0 654.3224354474625 0 8.253800256993955 0 0 0 0.4247425010840047 0 0 0 + WE{I|L} 2.4929 + + 66 NaN NaN 94403.5 NaN 18164 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22260 89.204 NaN 78767 35 0 18715 0.262 -1 PPEMVGMI 8 27 453.2096818797742 NaN 0 453.20965576171875 PEAK HCD FTMS 0 0 0 22253 18889.02734375 0.4574732436877354 25 -0.6371307373046875 7 2 Oxidation (M) _PPEM(Oxidation (M))VGM(Oxidation (M))I_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98599 NaN 18165 4093 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22262 89.209 NaN 379150 35 0 37072 0.327 + 29217 TYLEGECLELL 11 84 641.8155120941216 1281.616471255043 2 641.815673828125 MULTI HCD FTMS 0 0 0 22261 222275.546875 0.5602719795224907 -7 0.1706390380859375 1 Unmodified _TYLEGECLELL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 114.20165948288297 0.01873520274434939 1 [YT]{I|L}E{[DA]|[EG]}C{I|L}E{I|L}{I|L} 11 0 + 92.026 0 0 7.1805 7.1805 93.729 0 0 0 8.010078389126775 86.54162016654641 8.010078389126775 25.779550148593472 0 2.6747425010840047 1.3010299956639813 1.329689690656103 0 + + [YT]{I|L}E{[DA]|[EG]}C{I|L}E{I|L}{I|L};[YT]VVDDC{I|L}E{I|L}{I|L} 7.1805;5.169 +;- + 361 NaN NaN 138044.7 NaN 18166 4094 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22263 89.214 NaN 215140 35 0 25492 0.262 -1 VVMIFGMIF 9 59 544.7775618031144 NaN 0 544.7616577148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _VVM(Oxidation (M))IFGM(Oxidation (M))IF_ ENSG00000010278|ENST00000009180|CD9 9.347437153973935 0.2499504662953367 1 Q{M(Oxidation (M))|F}{I|L}SG{M(Oxidation (M))|F}{I|L} 7 -1 24.673 0 0 2.2687 0 0 130.07989059665994 162.05597864322502 292.135869239885 0 0 0 0 0 0 0 0.7742275032520141 0 Q{M(Oxidation (M))|F}{I|L}SG{M(Oxidation (M))|F}{I|L} 2.2687 - 224 + NaN NaN 114045.8 NaN 18167 4094 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22264 89.217 NaN 151490 35 0 21504 0.261 + 12786 KYDVLFALF 9 52 558.3103241922371 1114.606095451274 2 558.3115844726562 MULTI HCD FTMS 0 0 0 22261 21215.017578125 0.003577194292938162 56 -1.4054641723632812 3 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 4 + 64.442 0 0 5.7816 5.7816 92.833 0 0 0 1.249387366082999 49.83796566865003 1.249387366082999 64.4420594384119 0 2.3807196863200843 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5.7816 - 76 NaN NaN 101815.5 NaN 18168 4094 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22265 89.221 NaN 95589 35 0 6858.9 0.261 + 28134 TIPDLDWEL 9 47 551.2769790979767 1100.5394052627532 2 551.7787475585938 MULTI HCD FTMS 0 0 0 22261 21470.41015625 0.05039179155517948 32 -0.825408935546875 4 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 29.081581746732265 0.1154664336125038 1 WE{I|L} 3 6 33.188 0 0 3.0156 0 0 654.3213550062702 0 654.3213550062702 0 26.197887582883936 0 0 0 1 0 0 0 + WE{I|L} 3.0156 + + 82 NaN NaN 109485.3 NaN 18169 4094 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22266 89.224 NaN 119500 35 0 12478 0.261 + 8303 GYADIVQLL 9 47 496.2764359399022 990.5383189466045 2 496.27569580078125 MULTI HCD FTMS 0 0 0 22261 27148.572265625 0.007435547941915594 32 -0.825408935546875 5 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 26.268140514670165 0.13340543277302316 1 {I|L}VQ{I|L}{I|L} 5 4 52.959 0 0 5.3465 0 0 406.1490650861344 0 406.1490650861344 0 47.47425010840047 0 0 0 1.8494850021680094 0 0 0 + {I|L}VQ{I|L}{I|L} 5.3465 + + 141 NaN NaN 121777.7 NaN 18170 4094 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22267 89.227 NaN 80905 35 0 5961.6 0.261 + 432 ALDREQEKSSD 11 49 639.3030395507812 NaN 0 639.3030395507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _ALDREQEKSSD_ REV__ENSG00000156575|ENST00000287143|PRG3 4.189502756095605 0.3302357306631285 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.54881 0 0 147.07564202681675 976.4442372535503 1123.5198792803671 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54881 - 11 + NaN NaN 94550.1 NaN 18171 4094 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22269 89.232 NaN 835530 35 0 93117 0.327 + 3672 ELPEQFFQL 9 88 575.7925509527348 1149.5705489722695 2 575.7926635742188 MULTI HCD FTMS 0 0 0 22268 412984.9375 0.5022139489691584 -6 0.14394378662109375 1 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 86.33184430468982 0.004622086694044132 1 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 68.893 0 0 5.9929 5.9929 86.795 0 0 0 8.494850021680094 16.145162531850872 8.494850021680094 8.494850021680094 0 2.3494850021680094 0 1.555462187404089 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[PA]{[DA]|[EG]}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[AG]{I|L} 5.9929;5.2539;5.1919;5.1919;4.4529;4.4529;4.121;3.5363;3.32;3.32 +;-;-;-;-;-;-;-;-;- + 1366 NaN NaN 225083.7 NaN 18172 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22270 89.237 NaN 508360 35 0 112400 0.261 + 29503 TYVSFPLEL 9 50 534.7843513111387 1067.5541496890773 2 534.784423828125 MULTI HCD FTMS 0 0 0 22268 256117.421875 0.34156344582866843 9 -0.233001708984375 2 Unmodified _TYVSFPLEL_ ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22 107.1870275148908 0.00340162908551068 1 [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L} 9 0 + 100.97 0 0 9.4581 9.4581 97.592 0 0 0 19.621892823592972 89.28842824069392 19.621892823592972 35.20371142458043 0 2.4604093769761874 1.3979400086720375 1.555462187404089 0 + + [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L};[YT][YG]{I|L}P{I|L}E{I|L};[YT][PA][YV]{I|L}E{I|L};[YT][PG][Y{I|L}]{I|L}E{I|L};[YT]{[ES]|[DT]|[{I|L}C]}V[{I|L}P]{M(Oxidation (M))|F}{I|L} 9.4581;6.1605;4.1406;3.9015;2.9542 +;-;-;-;- + 317 NaN NaN 165967.2 NaN 18173 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22271 89.24 NaN 324280 35 0 72151 0.261 + 26759 SYFPTVPGVYI 11 52 621.8247044826078 1241.6348560320155 2 621.8240966796875 MULTI HCD FTMS 0 0 0 22268 125392.6484375 0.9245454621909635 -2 0.0499725341796875 3 Unmodified _SYFPTVPGVYI_ ENSG00000136068|ENST00000295956|FLNB;ENST00000477629.1_1_3:58135593-58136214:+|nuORF;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 39.94969957227396 0.1372740116928318 1 V[TP]C[Y{I|L}] 6 7 26.387 0 0 2.1252 0 0 547.3020494080538 0 547.3020494080538 0 -1.059837384595923 -1.059837384595923 0 0 1.8494850021680094 0 0.4247425010840047 0 V[TP]C[Y{I|L}] 2.1252 - 213 + NaN NaN 137033.5 NaN 18174 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22272 89.243 NaN 234460 35 0 21668 0.262 -1 YPFVLGLVM 9 51 527.7858307462864 1053.5571085593726 2 527.7947387695312 MULTI HCD FTMS 0 0 0 22268 11623.001953125 0.41514277311142445 -6 0.14394378662109375 4 Oxidation (M) _YPFVLGLVM(Oxidation (M))_ ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2 36.466142684027034 0.08156716203802528 1 {I|L}[{I|L}P]TS{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 48.141 0 0 4.5694 0 0 131.0765284477315 0 131.0765284477315 0 34.73828478979911 0 0 0 0.9247425010840047 0 1.1549471895720984 0 {I|L}[{I|L}P]TS{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.5694 - 196 + NaN NaN 124740.7 NaN 18175 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22273 89.247 NaN 246190 35 0 64390 0.261 + 30087 VFTYVGALF 9 46 508.77624870781165 1015.5379444824233 2 508.7763977050781 MULTI HCD FTMS 0 0 0 22268 108980.9453125 0.07864608760216307 15 -0.40093994140625 5 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 53.57557251787612 0.02656881086235134 1 GA{I|L}{M(Oxidation (M))|F} 4 5 49.438 0 0 4.8682 0 0 609.315901286862 0 609.315901286862 0 40.48577533287428 0 0 0 1.75 0 0 0 + GA{I|L}{M(Oxidation (M))|F} 4.8682 + + 114 NaN NaN 122193.2 NaN 18176 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22274 89.25 NaN 113460 35 0 8768.6 0.262 -1 0 48 422.5817485628112 1264.7234162886336 3 422.5816345214844 MULTI HCD FTMS 0 0 0 22268 31396.64453125 0.15568430471579542 -15 0.3753509521484375 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 105623.5 NaN 18177 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22275 89.253 NaN 148220 35 0 21305 0.261 + -1 PFFSPECIL 9 50 555.2703309496736 1108.5261089661471 2 555.27978515625 MULTI HCD FTMS 0 0 0 22268 25748.4296875 0.07442288487920176 -6 0.14394378662109375 7 Carbamidomethyl (C) _PFFSPEC(Carbamidomethyl (C))IL_ REV__ENSG00000167889|ENST00000569840|MGAT5B;REV__ENST00000563153.5_1_17:74940311-74944917:+|nuORF;REV__ENST00000568598.1_1_17:74942385-74944917:+|nuORF;REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B;REV__nc|ENSG00000167889|Q3V5L5-5|MGAT5B 7.910154910731844 0.2910521888787154 1 {I|L}{I|L} 2 -1 24.776 0 0 2.2351 0 0 864.3473032257838 0 864.3473032257838 0 12.012087149992503 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 2.2351 + + 9 NaN NaN 108184.6 NaN 18178 4095 22268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22277 89.258 NaN 203420 35 0 9322.6 0.327 + 8225 GRRGRLGPLP 10 78 539.8326966871316 1077.650840441063 2 539.8328857421875 MULTI HCD FTMS 0 0 0 22276 128479.1640625 0.6844070795016469 -1 0.02631378173828125 1 Unmodified _GRRGRLGPLP_ REV__ENST00000355280.10_1_17:4736705-4736843:+|nuORF 3.2813086475875832 0.45793521633868084 1 [YT]VD{I|L} 5 -1 16.753 0 0 1.5546 0 0 0 483.33611811123814 483.33611811123814 6.575773191777936 0 0 0 0 0 0.958607314841775 0 0 [YT]VD{I|L} 1.5546 - 58 NaN NaN 126639.3 NaN 18179 4096 22276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22278 89.263 NaN 177850 35 0 28377 0.261 + 35262 YVSKYIDYI 9 56 582.3020416479612 1162.5895303627224 2 582.3021240234375 MULTI HCD FTMS 0 0 0 22276 51005.828125 0.4732520976234775 1 -0.01959991455078125 2 Unmodified _YVSKYIDYI_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 29.081581746732265 0.1154664336125038 1 VYSAA{I|L}{I|L}E 8 7 87.759 0 0 7.5486 0 0 0 313.1175631158813 313.1175631158813 48.47418457616534 0 0 0 0 1.9361818737241734 1.6989700043360187 0.3807196863200844 0 VYSAA{I|L}{I|L}E 7.5486 - 399 + NaN NaN 118001.6 NaN 18180 4096 22276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22279 89.266 NaN 171640 35 0 41842 0.261 -1 0 49 606.3694677211702 1210.7243825091402 2 606.3700561523438 MULTI HCD FTMS 0 0 0 22276 35170.390625 0.047055296969293565 54 -1.3562393188476562 3 NaN NaN 1 [Y{I|L}]G 3 -1 27.447 0 0 2.267 0 0 0 874.534110862909 874.534110862909 22.84318117920506 0 0 0 0 0 2 0 0 [Y{I|L}]G 2.267 - 14 NaN NaN 110871.6 NaN 18181 4096 22276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22280 89.27 NaN 132110 35 0 23563 0.261 + 8114 GLKILLYYI 9 46 548.3459021838366 NaN 0 548.3461303710938 PEAK HCD FTMS 0 0 0 22276 14510.310546875 0.4215222458252198 1 -0.01959991455078125 4 Unmodified _GLKILLYYI_ ENSG00000128708|ENST00000264108|HAT1 2.302733041254933 0.2840881193086663 1 {I|L}Y 2 7 9.464 0 0 0.86454 0 0 565.3881411823232 250.11965356998283 815.507794752306 0 0 0 0 0 0 0 0 0 + {I|L}Y 0.86454 + + 38 + NaN NaN 106594.3 NaN 18182 4096 22276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22281 89.273 NaN 232500 35 0 37132 0.261 -1 FPSWAMELL 9 70 555.2703309496736 1108.5261089661471 2 555.2681274414062 MULTI HCD FTMS 0 0 0 22276 43451.91796875 0.12559278868717613 -5 0.12712860107421875 5 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 20.453626601364224 0.18364154288633264 1 {M(Oxidation (M))|F}E{I|L}{I|L} 4 -1 38.175 0 0 3.4438 0 0 588.2697010724625 0 588.2697010724625 0 12.23320034371433 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}E{I|L}{I|L} 3.4438 + + 69 NaN NaN 131778.1 NaN 18183 4096 22276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22283 89.278 NaN 1792600 35 0 419180 0.327 + 10481 IPDQLGYLVL 10 61 565.8267471224575 1129.638941311715 2 565.8268432617188 MULTI HCD FTMS 0 0 0 22282 1396580.875 0.9480461427015323 -4 0.09588623046875 1 Unmodified _IPDQLGYLVL_ ENSG00000188186|ENST00000341942|LAMTOR4;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENST00000474831.5_1_7:99746595-99751042:+|nuORF 49.55428908609986 0.07941048486997417 1 Q{[VA]|[{I|L}G]}Y{I|L}V{I|L} 7 3 55.085 0 0 4.8763 0 0 325.16331679511876 0 325.16331679511876 0 34.62704974914287 0 0 0 1.9247425010840047 0 0 0.8882104921644451 + Q{[VA]|[{I|L}G]}Y{I|L}V{I|L} 4.8763 + + 493 NaN NaN 355088.8 NaN 18184 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22284 89.282 NaN 622100 35 0 19649 0.261 -1 0 95 589.3431010203685 1176.671649107537 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22282 759447.5625 0.16595332674718635 48 -1.2056732177734375 2 NaN NaN 1 Q 1 -1 11.722 0 0 0.99617 0 0 546.325898230387 499.2749434570154 1045.6008416874024 0 0 0 0 0 0.7742275032520141 0 0 0 Q 0.99617 - 202 + NaN NaN 175518 NaN 18185 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22285 89.286 NaN 548110 35 0 25761 0.261 -1 0 108 619.8697049488608 1237.7248569645215 2 619.8695678710938 MULTI HCD FTMS 0 0 0 22282 648504.1875 0.2922846642697376 -34 0.80584716796875 3 NaN NaN 1 AK{M(Oxidation (M))|F} 3 -1 9.9536 0 0 0.80418 0 0 193.1317011579286 695.3524874322874 888.484188590216 0 0 0 0 0 0.3054621874040891 0 0 0.4247425010840047 AK{M(Oxidation (M))|F} 0.80418 - 197 + NaN NaN 173112.4 NaN 18186 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22286 89.289 NaN 332410 35 0 23493 0.261 -1 0 102 597.8562607199011 1193.6979685066021 2 597.8565063476562 MULTI HCD FTMS 0 0 0 22282 324652.59375 0.16958359502726786 42 -1.0410537719726562 4 NaN NaN 1 D 1 -1 11.722 0 0 0.98196 0 0 105.07843286229475 970.5437105768186 1075.6221434391134 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 D 0.98196 - 266 + NaN NaN 130384.5 NaN 18187 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22287 89.293 NaN 678840 35 0 53556 0.261 -1 0 105 641.8826294042019 1281.7507058752037 2 641.8825073242188 MULTI HCD FTMS 0 0 0 22282 305976 0.5170200706332694 -4 0.09588623046875 5 NaN NaN 1 [YT]{I|L}EWC{I|L}E{I|L} 9 -1 53.532 0 0 4.1765 0 0 0 128.20641463128996 128.20641463128996 19.06279947363599 0 0 0 0 0 1.2218487496163564 1.2931576817365436 0 [YT]{I|L}EWC{I|L}E{I|L} 4.1765 - 620 NaN NaN 190667.7 NaN 18188 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22288 89.296 NaN 235850 35 0 57559 0.261 + 785 ASTWWALNLF 10 50 604.8089103414744 1207.6032677497487 2 604.8090209960938 MULTI HCD FTMS 0 0 0 22282 144198.0625 1 0 0 6 Unmodified _ASTWWALNLF_ REV__ENSG00000007402|ENST00000424201|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47-3|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47-5|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47|CACNA2D2 16.149105407346934 0.3600587335443843 1 {[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T]{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F} 10 -1 + 64.142 0 0 5.3115 5.3115 89.825 0 0 0 12.582941297923455 40.67410004652736 12.582941297923455 20 0 1.5 1.6989700043360187 0.4247425010840047 0 {[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T]{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F};[KA]{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F} 5.3115;3.6553 -;- 132 NaN NaN 115616.6 NaN 18189 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22289 89.299 NaN 376350 35 0 62752 0.261 + 26760 SYFPTVPGVYI 11 71 621.8247044826078 1241.6348560320155 2 622.3472900390625 MULTI HCD FTMS 0 0 0 22282 92333.21875 1 0 0 7 Unmodified _SYFPTVPGVYI_ ENSG00000136068|ENST00000295956|FLNB;ENST00000477629.1_1_3:58135593-58136214:+|nuORF;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 38.175570920033316 0.14869995854639997 1 V[TP]C[Y{I|L}] 6 7 25.947 0 0 2.0898 0 0 547.3017373706095 0 547.3017373706095 0 -1.9846155972754076 -1.9846155972754076 0 0 1.805462187404089 0 0.4247425010840047 0 V[TP]C[Y{I|L}] 2.0898 - 211 + NaN NaN 139435.8 NaN 18190 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22290 89.303 NaN 84114 35 0 5066.4 0.261 -1 LRVKMYNFL 9 44 600.3340342714716 1198.6535156097432 2 600.3346557617188 MULTI HCD FTMS 0 0 0 22282 34801.58984375 0.11964706962408621 47 -1.1761245727539062 8 Oxidation (M) _LRVKM(Oxidation (M))YNFL_ ENSG00000144820|ENST00000273352|ADGRG7 2.0597508629832335 0.3354026079994024 1 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 5.0617 0 0 0.42228 0 0 806.452234947437 0 806.452234947437 0 -0.8804562952784067 -0.8804562952784067 0 0 0 0 0 0 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 0.42228 + + 25 + NaN NaN 96984 NaN 18191 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22291 89.306 NaN 271520 35 0 53141 0.261 -1 FPSWAMELL 9 57 555.2703309496736 1108.5261089661471 2 555.2701416015625 MULTI HCD FTMS 0 0 0 22282 100403.1875 0.29020390585003164 -4 0.09588623046875 9 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}E{I|L}{I|L} 4 -1 39.725 0 0 3.5836 0 0 588.27055556465 0 588.27055556465 0 30.7723722827955 0 0 0 1.2302046884880937 0 0 0 {M(Oxidation (M))|F}E{I|L}{I|L} 3.5836 + + 168 NaN NaN 121650.4 NaN 18192 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22292 89.309 NaN 54307 35 0 9429.9 0.261 + 31040 VSSPFIVSL 9 27 474.77369937741815 947.5328458216363 2 474.7737731933594 MULTI HCD FTMS 0 0 0 22282 45471.26171875 0.023421476088299656 40 -0.9987945556640625 10 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 13.90604991867851 0.24021115267848145 1 {I|L}W{I|L} 3 7 33.812 0 0 3.5685 0 0 517.2538319318375 0 517.2538319318375 0 31.822581265925436 0 0 0 1 0 0 0 {I|L}W{I|L} 3.5685 - 15 NaN NaN 94407.7 NaN 18193 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22293 89.313 NaN 59132 35 0 14467 0.261 + -1 SCLEELHQGRQ 11 35 452.88055713304715 NaN 0 452.8805847167969 PEAK HCD FTMS 0 0 0 22282 7506.02099609375 0.2564577514137738 3 -0.0821075439453125 11 Carbamidomethyl (C) _SC(Carbamidomethyl (C))LEELHQGRQ_ REV__ENST00000519937.6_1_2:85886341-85886767:-|nuORF 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87287.1 NaN 18194 4097 22282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22295 89.318 NaN 584190 35 0 32524 0.327 -1 0 93 633.3694581930936 1264.724363452987 2 633.369384765625 MULTI HCD FTMS 0 0 0 22294 795354.125 0.5982613390329651 -9 0.229400634765625 1 NaN NaN 1 {[HG]|PP}N 3 -1 8.4286 0 0 0.66644 0 0 0 953.5187712455677 953.5187712455677 0.017346757967546367 0 0 0 0 0.4247425010840047 0 0 0 {[HG]|PP}N 0.66644 - 101 + NaN NaN 178743 NaN 18195 4098 22294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22296 89.322 NaN 133800 35 0 30115 0.264 + 14673 LGTCRLGWAYY 11 28 434.88223890812856 NaN 0 434.8821105957031 PEAK HCD FTMS 0 0 0 22294 57947.15625 0.6100547510213589 -10 0.245880126953125 2 Unmodified _LGTCRLGWAYY_ ENSG00000182508|ENST00000371968|LHFPL1 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101756.1 NaN 18196 4098 22294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22297 89.326 NaN 432710 35 0 107670 0.261 + 16464 LSSPWLPLS 9 50 500.2791747845412 998.5437966358825 2 500.79107666015625 MULTI HCD FTMS 0 0 0 22294 11186.134765625 0.5098155022411298 -2 0.05914306640625 3 Unmodified _LSSPWLPLS_ REV__ENST00000367558.5_1_1:182568870-182568942:-|nuORF 7.289230182591677 0.29575926068275815 1 SV[HV]EV{[TV]|[{I|L}S]} 8 -1 27.396 0 0 2.7436 0 0 130.07028390928127 0 130.07028390928127 0 6.42667503568731 0 0 0 0 0 0.3494850021680094 0 SV[HV]EV{[TV]|[{I|L}S]} 2.7436 - 53 + NaN NaN 153346.4 NaN 18197 4098 22294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22298 89.329 NaN 181400 35 0 43620 0.261 + 21394 PVKVDEFVI 9 46 523.2998401187091 1044.585127304218 2 523.2818603515625 MULTI HCD FTMS 0 0 0 22294 16805.470703125 0.18773714237239292 -5 0.13542938232421875 4 Unmodified _PVKVDEFVI_ REV__EGFR-ACADM|1|fusion;REV__ENSG00000117054|ENST00000370841|ACADM;REV__ENST00000526129.5_1_1:76198579-76227103:+|nuORF;REV__ENST00000534334.5_1_1:76200478-76220620:+|nuORF;REV__nc|ENSG00000117054|P11310-2|ACADM 10.073929032068715 0.27331982688540024 1 V{I|L} 2 -1 19.949 0 0 1.9097 0 0 814.4191761701187 0 814.4191761701187 0 8.688943958548377 0 0 0 0.3494850021680094 0 0 0 V{I|L} 1.9097 + + 21 NaN NaN 109822 NaN 18198 4098 22294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22299 89.332 NaN 57896 35 0 7220.8 0.261 -1 VYMGLLAVF 9 29 514.7777485443444 1027.5409441554887 2 514.77783203125 MULTI HCD FTMS 0 0 0 22294 17301.21484375 0.10491810291978175 9 -0.2333984375 5 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 20.871210003555333 0.18003371494288972 1 {I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 4 -1 29.085 0 0 2.8306 0 0 579.2714710919937 0 579.2714710919937 0 27.975898734766513 0 0 0 1.2887254899964358 0 0 0 {I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 2.8306 + + 10 NaN NaN 95756.3 NaN 18199 4098 22294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22301 89.337 NaN 1890300 35 0 166220 0.327 -1 0 100 611.3718650388877 610.3645885722876 1 611.3564453125 MULTI HCD FTMS 0 0 0 22300 148288.59375 0.3425856477656111 -10 0.2490234375 1 NaN NaN 1 V 1 -1 3.0989 0 0 0.50772 0 0 284.1708699469346 224.09736047916252 508.26823042609715 0 0 0 0 0 0 0 0 0 V 0.50772 - 30 + NaN NaN 370351.1 NaN 18200 4099 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22302 89.342 NaN 303440 35 0 13192 0.261 -1 KLCLRMKL 8 77 531.3193188011114 1060.6240846690227 2 531.3193359375 MULTI HCD FTMS 0 0 0 22300 336277.21875 1 0 0 2 Carbamidomethyl (C) _KLC(Carbamidomethyl (C))LRMKL_ ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888-3|TP53BP1;nc|ENSG00000067369|Q12888|TP53BP1;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant 4.75600775471527 0.5349361699807423 1 {I|L}Q{[QN]|[E{I|L}]|[KN]} 4 -1 9.2082 0 0 0.86819 0 0 559.3355191697603 0 559.3355191697603 0 2.218487496163563 0 0 0 0 0 0 0 {I|L}Q{[QN]|[E{I|L}]|[KN]} 0.86819 - 52 NaN NaN 135863.8 NaN 18201 4099 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22303 89.345 NaN 644320 35 0 215980 0.263 -1 0 50 405.1189366021065 808.223320271013 2 405.1188659667969 MULTI HCD FTMS 0 0 0 22300 171393.828125 0.48641737351588715 -2 0.05916595458984375 3 NaN NaN 1 [C(Carbamidomethyl (C))M]G 3 -1 7.4473 0 0 0.92144 0 0 0 457.10641288259427 457.10641288259427 3.9524249272868435 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]G 0.92144 - 6 NaN NaN 174612.4 NaN 18202 4099 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22304 89.349 NaN 160510 35 0 19434 0.261 + 13543 KYPENFFLL 9 48 585.8135793710412 NaN 0 585.8135986328125 PEAK HCD FTMS 0 0 0 22300 110506.8125 0.5466799319072968 91 -2.3588638305664062 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.1538978316896649 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 24.807 0 0 2.121 0 0 131.0949663876932 628.2786348932249 759.3736012809181 0 0 0 0 0 1.25 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.121 - 27 + NaN NaN 117396.4 NaN 18203 4099 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22305 89.352 NaN 83038 35 0 6803.6 0.262 + 6672 FPNATSPEL 9 41 488.24363614212564 974.4727193510513 2 488.2431945800781 MULTI HCD FTMS 0 0 0 22300 33139.55078125 0.6304844037002697 -2 0.05916595458984375 5 Unmodified _FPNATSPEL_ ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-3|AKNA;nc|ENSG00000106948|Q7Z591-6|AKNA 14.838274106304384 0.23215694253501695 1 PE 2 7 24.776 0 0 2.5425 0 0 730.3507617992937 0 730.3507617992937 0 6.817496819840656 0 0 0 0.3807196863200844 0 0 0 + PE 2.5425 + + 5 NaN NaN 86627.7 NaN 18204 4099 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22306 89.355 NaN 46715 35 0 5489.9 0.261 + -1 CLLPNLHR 8 32 511.78218450206225 NaN 0 511.7817687988281 PEAK HCD FTMS 0 0 0 22300 12690.1748046875 0.5642912372734463 -1 0.019622802734375 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLPNLHR_ REV__nc|ENSG00000179082|Q8NAJ2|LINC02913 2.577480529830294 0.38822285293237185 1 E 1 -1 3.9794 0 0 0.38955 0 0 528.3343447347902 361.15290247135005 889.4872472061402 0 0 0 0 0 0 0 0 0 E 0.38955 - 2 + NaN NaN 90122.2 NaN 18205 4099 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22308 89.36 NaN 53341 35 0 11601 0.327 -1 CRQAGVQWRN 10 34 637.8121236646053 1273.6096943960106 2 637.8126220703125 MULTI HCD FTMS 0 0 0 22307 20442.18359375 0.21262587233019017 -13 0.32157135009765625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))RQAGVQWRN_ nc|ENSG00000176927|A4FU69-5|EFCAB5;nc|ENSG00000176927|A4FU69-6|EFCAB5 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101688.5 NaN 18206 4100 22307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22309 89.365 NaN 130140 35 0 17611 0.262 -1 MPATVFMLF 9 47 544.76231948481 1087.5100860364198 2 544.7615966796875 MULTI HCD FTMS 0 0 0 22307 52611.0859375 0.6584570157124989 3 -0.0687713623046875 2 2 Oxidation (M) _M(Oxidation (M))PATVFM(Oxidation (M))LF_ ENSG00000109133|ENST00000504986|TMEM33 23.1484247019978 0.1603590852062899 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 -1 38.276 0 0 3.5196 0 0 515.2454508819261 0 515.2454508819261 0 38.27623146104628 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.5196 + + 59 + NaN NaN 100022.2 NaN 18207 4100 22307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22310 89.368 NaN 59154 35 0 5499 0.261 + 32647 WMRFALAV 8 26 497.2726347152989 NaN 0 497.3072814941406 PEAK HCD FTMS 0 0 0 22307 6658.49853515625 0.9135178294878994 -1 0.02294158935546875 3 Unmodified _WMRFALAV_ REV__ENSG00000154485|ENST00000368808|MMP21 2.8892196856762586 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.70423 0 0 302.1355895271352 588.3035982721311 890.4391877992664 0 0 0 0 0 0 0 0 0 V 0.70423 + + 3 + NaN NaN 89585.6 NaN 18208 4100 22307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22311 89.371 NaN 73193 35 0 8300.2 0.261 + -1 EMLVWEALGG 10 43 560.7692852211817 1119.5240175091633 2 560.7694091796875 MULTI HCD FTMS 0 0 0 22307 4477.2373046875 0.15582571169056428 -3 0.0821075439453125 4 Oxidation (M) _EM(Oxidation (M))LVWEALGG_ REV__ENSG00000168802|ENST00000448552|CHTF8 3.2813086475875832 0.45793521633868084 1 V 1 -1 3.4949 0 0 0.31217 0 0 814.5174389952946 202.92246423892814 1017.4399032342227 0 0 0 0 0 0 0 0 0 V 0.31217 + + 1 + NaN NaN 89845.4 NaN 18209 4100 22307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22313 89.376 NaN 1447800 35 0 141800 0.327 + 3673 ELPEQFFQL 9 105 575.7925509527348 1149.5705489722695 2 575.7925415039062 MULTI HCD FTMS 0 0 0 22312 822328.6875 1 0 0 1 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 118.0683919894846 0.0016252157255221692 1 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 87.14 0 0 7.5802 7.5802 90.796 0 0 0 25.378851766332374 16.478174818886373 16.478174818886373 9.208187539523749 0 2.2302046884880937 1.0457574905606752 1.8516784832448856 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[EP]Q{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG][EP]Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[EP][AG]{I|L} 7.5802;6.7792;6.7792;5.3725;4.5715;4.5715;4.0857;4.0168;3.2847;3.2847 +;-;-;-;-;-;-;-;-;- + 2022 NaN NaN 299389.4 NaN 18210 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22314 89.381 NaN 214630 35 0 80208 0.262 + 6857 FPTISLEF 8 44 477.2528027993933 952.4910526655866 2 477.25262451171875 MULTI HCD FTMS 0 0 0 22312 169385.34375 1 0 0 2 Unmodified _FPTISLEF_ ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1 44.40701690623563 0.17431628565839993 1 S{I|L}E{M(Oxidation (M))|F} 4 4 49.68 0 0 5.2158 0 0 458.2533131330094 0 458.2533131330094 0 49.680475292681265 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + S{I|L}E{M(Oxidation (M))|F} 5.2158 + + 20 NaN NaN 128871.7 NaN 18211 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22315 89.384 NaN 383130 35 0 66786 0.261 + 5240 FFDPSLLHLL 10 61 601.334649165231 1200.6547453972619 2 601.334228515625 MULTI HCD FTMS 0 0 0 22312 234295.109375 0.14546547284289035 -4 0.09839630126953125 3 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 81.89019881105858 0.0034965057646611547 1 {I|L}{[TV]|[{I|L}S]}PDY{I|L} 7 7 55.776 0 0 4.6454 0 0 381.23716933418126 0 381.23716933418126 0 47.816978991741976 0 0 0 1.8494850021680094 0 0.7059771852360797 0 {I|L}{[TV]|[{I|L}S]}PDY{I|L} 4.6454 - 202 NaN NaN 132677.8 NaN 18212 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22316 89.388 NaN 102900 35 0 9686.3 0.261 + 12787 KYDVLFALF 9 55 558.3103241922371 1114.606095451274 2 558.3099365234375 MULTI HCD FTMS 0 0 0 22312 71277.40625 0.012018520838551651 63 -1.6149063110351562 4 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 20.41453444215458 0.18397929046831515 1 {I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5 4 44.553 0 0 3.9972 0 0 505.25340468574376 0 505.25340468574376 0 31.057743964882718 0 0 0 1.3494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 3.9972 + + 50 NaN NaN 98352.7 NaN 18213 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22317 89.391 NaN 215870 35 0 17203 0.261 -1 YPFVLGLVM 9 49 527.7858307462864 1053.5571085593726 2 527.7948608398438 MULTI HCD FTMS 0 0 0 22312 27997.6015625 1 0 0 5 Oxidation (M) _YPFVLGLVM(Oxidation (M))_ ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2 28.173230860318316 0.11963627304438548 1 V{M(Oxidation (M))|F}ST{I|L}{I|L}P{I|L} 8 -1 33.268 0 0 3.1577 0 0 165.04597670722814 0 165.04597670722814 0 21.585942083947494 0 0 0 1.274227503252014 0 0.7742275032520141 0 V{M(Oxidation (M))|F}ST{I|L}{I|L}P{I|L} 3.1577 - 146 NaN NaN 111573.8 NaN 18214 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22318 89.394 NaN 157920 35 0 32539 0.261 + 14738 LHRSPFLF 8 43 508.7874497288199 NaN 0 508.7749938964844 PEAK HCD FTMS 0 0 0 22312 5978.564453125 0.3987447394066138 -1 0.01628875732421875 6 Unmodified _LHRSPFLF_ ENST00000294189.10_2_3:52029896-52029950:-|nuORF 10.183394434864962 0.38822285293237185 1 {I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{I|L} 6 5 19.213 0 0 1.8919 0 0 165.10131776216605 162.05571924381096 327.15703700597703 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{I|L} 1.8919 - 39 + NaN NaN 119010.2 NaN 18215 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22319 89.398 NaN 107510 35 0 7687.9 0.261 + 28612 TQMNRAELSL 10 53 581.7967999169302 1161.5790469006604 2 582.2969360351562 MULTI HCD FTMS 0 0 0 22312 61091.09375 1 0 0 7 Unmodified _TQMNRAELSL_ REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF 17.44264345198275 0.3479594151168503 1 E{I|L}S{I|L} 4 -1 36.855 0 0 3.1728 0 0 701.3143177716812 0 701.3143177716812 0 25.159940911636767 0 0 0 0.3807196863200844 0 0.3494850021680094 0 E{I|L}S{I|L} 3.1728 + + 33 NaN NaN 105014.7 NaN 18216 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22320 89.401 NaN 145370 35 0 13916 0.261 -1 TYTMILNLL 9 55 549.2992800643545 1096.584007195509 2 549.2984619140625 MULTI HCD FTMS 0 0 0 22312 61057.203125 0.24834188178892339 -20 0.48654937744140625 8 Oxidation (M) _TYTM(Oxidation (M))ILNLL_ ENSG00000204351|ENST00000375394|SKIC2 39.94969957227396 0.06557568441294001 1 {I|L}{I|L}N{I|L}{I|L} 5 -1 55.133 0 0 5.0277 0 0 512.1963978498062 0 512.1963978498062 0 35.95175337211302 0 0 0 1.6861818737241734 0 0 0.3807196863200844 {I|L}{I|L}N{I|L}{I|L} 5.0277 + + 72 NaN NaN 111792.7 NaN 18217 4101 22312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22322 89.406 NaN 156820 35 0 10771 0.327 + 8226 GRRGRLGPLP 10 65 539.8326966871316 1077.650840441063 2 539.8327026367188 MULTI HCD FTMS 0 0 0 22321 68179.6015625 0.3631919800184647 5 -0.14496612548828125 1 Unmodified _GRRGRLGPLP_ REV__ENST00000355280.10_1_17:4736705-4736843:+|nuORF 6.2057823575117 0.44245551207394906 1 TD 2 -1 8.5835 0 0 0.7965 0 0 262.24008712250685 596.3133733280407 858.5534604505476 0 0 0 0 0 0 0 0 0 TD 0.7965 - 17 + NaN NaN 107589.7 NaN 18218 4102 22321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22323 89.41 NaN 142800 35 0 29797 0.261 + 23405 RLHPYAIF 8 48 508.7874497288199 NaN 0 508.77655029296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RLHPYAIF_ REV__ENSG00000111775|ENST00000229379|COX6A1;REV__ENST00000550009.1_1_12:120875908-120876378:+|nuORF 15.768221252438446 0.38723490340397554 1 {I|L}AGPYA{I|L} 7 -1 20.706 0 0 2.0388 0 0 165.10151415528418 162.05562769107658 327.1571418463608 0 0 0 0 0 0.1989700043360188 0 0 0 {I|L}AGPYA{I|L} 2.0388 - 51 + NaN NaN 115828.3 NaN 18219 4102 22321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22324 89.414 NaN 117180 35 0 9072.5 0.261 + 28613 TQMNRAELSL 10 48 581.7967999169302 1161.5790469006604 2 582.3015747070312 MULTI HCD FTMS 0 0 0 22321 26939.833984375 0.4409780923978792 1 -0.0229034423828125 3 Unmodified _TQMNRAELSL_ REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF 18.373094154950223 0.33925629317698053 1 [YV][C(Carbamidomethyl (C))D][RH]{I|L}S{I|L} 9 -1 + 30.366 0 0 2.6142 2.6142 86.304 0 0 0 0.1579426718323198 24.396512253176827 0.1579426718323198 16.53212513775344 0 0 1.6989700043360187 0.3252574989159953 0 [YV][C(Carbamidomethyl (C))D][RH]{I|L}S{I|L};[YT][YK]H[HN]S{I|L} 2.6142;1.1909 -;- 104 NaN NaN 108191 NaN 18220 4102 22321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22325 89.417 NaN 114420 35 0 29079 0.261 -1 0 39 606.3694677211702 1210.7243825091402 2 606.3700561523438 MULTI HCD FTMS 0 0 0 22321 50087.34375 0.06701304115979917 60 -1.5196533203125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 0.71334 0 0 0.058918 0 0 671.487945596834 389.18247400455317 1060.6704196013873 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.058918 - 2 + NaN NaN 104505.5 NaN 18221 4102 22321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22326 89.421 NaN 83430 35 0 7062.2 0.261 + 25131 SAHLSLSNFF 10 40 561.7806396484375 NaN 0 561.7806396484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _SAHLSLSNFF_ REV__ENSG00000133103|ENST00000455146|COG6;REV__nc|ENSG00000133103|Q9Y2V7-2|COG6 5.296884461304476 0.3356508900602619 1 {M(Oxidation (M))|F} 1 -1 10.485 0 0 0.93483 0 0 165.07156269355625 806.3781221979124 971.4496848914687 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.93483 + + 3 + NaN NaN 93987.7 NaN 18222 4102 22321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22327 89.424 NaN 83672 35 0 5555.8 0.261 + 3239 EDQVMQLE 8 41 496.2259962745522 NaN 0 496.2259826660156 PEAK HCD FTMS 0 0 0 22321 7216.4365234375 0.31905296379599934 1 -0.0229034423828125 6 Unmodified _EDQVMQLE_ REV__ENSG00000111879|ENST00000338891|FAM184A;REV__nc|ENSG00000111879|Q8NB25-2|FAM184A;REV__nc|ENSG00000111879|Q8NB25-3|FAM184A;REV__nc|ENSG00000111879|Q8NB25-4|FAM184A 9.38312468134398 0.38822285293237185 1 {I|L}QV 3 -1 13.812 0 0 1.3946 0 0 130.99244557469189 516.2089937799436 647.2014393546356 0 0 0 0 0 0 0 0 0 {I|L}QV 1.3946 - 22 + NaN NaN 92674.3 NaN 18223 4102 22321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22329 89.429 NaN 1002700 35 0 49266 0.326 -1 0 111 619.8697049488608 1237.7248569645215 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22328 819366 0.36929309145600203 -28 0.6882247924804688 1 NaN NaN 1 Q{I|L}{M(Oxidation (M))|F}DEM 6 -1 11.99 0 0 0.96873 0 0 456.35786585299644 0 456.35786585299644 0 2.1968449794565963 0 0 0 0.1861818737241735 0 0.3807196863200844 0 Q{I|L}{M(Oxidation (M))|F}DEM 0.96873 - 369 + NaN NaN 252231.1 NaN 18224 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22330 89.433 NaN 1135400 35 0 294660 0.261 + 10482 IPDQLGYLVL 10 62 565.8267471224575 1129.638941311715 2 565.826904296875 MULTI HCD FTMS 0 0 0 22328 848302.9375 0.5758566096211607 2 -0.05916595458984375 2 Unmodified _IPDQLGYLVL_ ENSG00000188186|ENST00000341942|LAMTOR4;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENST00000474831.5_1_7:99746595-99751042:+|nuORF 23.789781309258295 0.28859042913526417 1 Y{I|L}V{I|L} 4 6 46.186 0 0 4.0885 0 0 623.3271351544937 0 623.3271351544937 0 25.80652530802702 0 0 0 1.4247425010840047 0 0 0 + Y{I|L}V{I|L} 4.0885 + + 108 NaN NaN 252627.4 NaN 18225 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22331 89.437 NaN 411450 35 0 12190 0.261 -1 0 92 589.3431010203685 1176.671649107537 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22328 420931.46875 0.09198130459684214 54 -1.3656768798828125 3 NaN NaN 1 Q 1 -1 13.539 0 0 1.1506 0 0 546.3245554569495 499.27671228580317 1045.6012677427527 0 0 0 0 0 0.805462187404089 0 0 0 Q 1.1506 - 183 + NaN NaN 153372.3 NaN 18226 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22332 89.44 NaN 485780 35 0 19306 0.261 -1 0 108 641.8826294042019 1281.7507058752037 2 641.8825073242188 MULTI HCD FTMS 0 0 0 22328 406308.6875 0.6865562864739749 2 -0.05916595458984375 4 NaN NaN 1 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 9 -1 18.515 0 0 1.4445 0 0 131.22923785036875 0 131.22923785036875 0 8.822450201455185 0 0 0 0 0 0 0 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 1.4445 - 304 + NaN NaN 158105.1 NaN 18227 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22333 89.444 NaN 161220 35 0 6908.3 0.261 -1 0 74 597.8562607199011 1193.6979685066021 2 597.8564453125 MULTI HCD FTMS 0 0 0 22328 183565.75 0.09588631173188246 48 -1.2153244018554688 5 NaN NaN 1 D 1 -1 7.7866 0 0 0.65231 0 0 61.05067158195636 1014.5719088190061 1075.6225804009625 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.65231 - 66 + NaN NaN 116757.2 NaN 18228 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22334 89.447 NaN 202220 35 0 11572 0.264 -1 0 68 422.5817485628112 1264.7234162886336 3 422.58203125 MULTI HCD FTMS 0 0 0 22328 133539.421875 0.6621724186502086 -7 0.17047882080078125 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.0357 0 0 1099.6447857728117 0 1099.6447857728117 0 12.821357152192812 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0357 - 5 + NaN NaN 120729.7 NaN 18229 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22335 89.45 NaN 149880 35 0 12017 0.261 -1 0 51 407.9063024768881 1220.6970780308643 3 407.9065246582031 MULTI HCD FTMS 0 0 0 22328 60320.35546875 0.16507910963306155 -27 0.68096923828125 7 NaN NaN 1 R 1 -1 5.4846 0 0 0.4493 0 0 888.483803960355 173.08156763248283 1061.565371592838 0 0 0 0 0 0.5 0 0 0 R 0.4493 - 8 + NaN NaN 123761.4 NaN 18230 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22336 89.454 NaN 53809 35 0 12838 0.261 + -1 NAAFALWQVF 10 30 604.8089103414744 1207.6032677497487 2 604.8094482421875 MULTI HCD FTMS 0 0 0 22328 20786.224609375 0.14415051248954888 6 -0.17780303955078125 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NAAFALWQVF_ REV__ENST00000482611.5_1_10:103552686-103559078:-|nuORF 8.745405648335112 0.42901288225909884 1 W{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 4 -1 24.693 0 0 2.0448 0 0 629.3168202130875 0 629.3168202130875 0 20.088643834802156 0 0 0 0.8494850021680094 0 0 0 W{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 2.0448 + + 6 NaN NaN 91680.7 NaN 18231 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22337 89.457 NaN 145760 35 0 9671.6 0.261 + 17498 LYTELFTGF 9 58 545.7756611058247 1089.5367692784494 2 545.777099609375 MULTI HCD FTMS 0 0 0 22328 28957.14453125 0.24616223518818436 15 -0.3903656005859375 9 Unmodified _LYTELFTGF_ ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1 14.838274106304384 0.23215694253501695 1 [YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 4 [YT]{[QN]|[E{I|L}]|[KN]}{I|L} + + 36.67 1.6947 0.27364 3.3657 3.3657 59.509 0 0 0 0 21.096981436199016 0 0 0 0.9247425010840047 0 0 0 [YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 3.3657 - 78 + NaN NaN 108408.9 NaN 18232 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22338 89.46 NaN 136120 35 0 7962.5 0.261 -1 CHHWPLLSL 9 53 581.7967999169302 1161.5790469006604 2 582.3031616210938 MULTI HCD FTMS 0 0 0 22328 20400.5 0.33393574656698627 2 -0.05916595458984375 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))HHWPLLSL_ ENST00000487903.5_1_13:113536502-113536748:+|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}S{I|L} 3 -1 25.93 0 0 2.2323 0 0 830.3674183576187 0 830.3674183576187 0 5.924778212679485 0 0 0 0.4247425010840047 0 0 0 {I|L}S{I|L} 2.2323 + + 84 NaN NaN 104555.6 NaN 18233 4103 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22340 89.465 NaN 814790 35 0 38223 0.327 -1 0 110 633.3694581930936 1264.724363452987 2 633.3693237304688 MULTI HCD FTMS 0 0 0 22339 777691.8125 0.5849758371482936 -3 0.08869171142578125 1 NaN NaN 1 {[HG]|PP}N 3 -1 10.929 0 0 0.86411 0 0 0 953.5186296937794 953.5186296937794 0.6381812627582661 0 0 0 0 0.6747425010840047 0 0 0 {[HG]|PP}N 0.86411 - 251 + NaN NaN 208983.4 NaN 18234 4104 22339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22341 89.47 NaN 238600 35 0 52057 0.261 -1 FPSWAMELL 9 58 555.2703309496736 1108.5261089661471 2 555.2705078125 MULTI HCD FTMS 0 0 0 22339 104477.5859375 0.3019804875502069 3 -0.08585357666015625 2 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}E{I|L}{I|L} 4 -1 43.972 0 0 3.9667 0 0 588.269823142775 0 588.269823142775 0 29.27948461635836 0 0 0 1.305462187404089 0 0.3494850021680094 0 {M(Oxidation (M))|F}E{I|L}{I|L} 3.9667 + + 78 NaN NaN 128482.2 NaN 18235 4104 22339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22342 89.473 NaN 195050 35 0 30792 0.261 + 29442 TYTMILNLL 9 42 549.2992800643545 1096.584007195509 2 549.3002319335938 MULTI HCD FTMS 0 0 0 22339 42824.0703125 0.17418109023917755 -17 0.42655181884765625 3 Oxidation (M) _TYTM(Oxidation (M))ILNLL_ ENSG00000204351|ENST00000375394|SKIC2 49.93300154707207 0.03166451819912738 1 N{I|L}M{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L} 7 6 48.448 0 0 4.4181 0 0 244.17854506660314 0 244.17854506660314 0 33.23145724778165 0 0 0 1 0 0.8494850021680094 0.4247425010840047 N{I|L}M{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L} 4.4181 - 89 NaN NaN 115301.5 NaN 18236 4104 22339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22343 89.476 NaN 71412 35 0 14596 0.261 + 5114 FEPPSAPGAP 10 35 485.2361588442313 NaN 0 485.2228698730469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FEPPSAPGAP_ ENST00000258052.7_1_6:109762145-109762325:+|nuORF 1.844237919475145 0.33860587697544825 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90312.9 NaN 18237 4104 22339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22344 89.48 NaN 43158 35 0 4643.3 0.261 + 11844 KETFAKSGR 9 31 512.2835083007812 NaN 0 512.2835083007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KETFAKSGR_ ENST00000504921.6_2_5:88017962-88018139:-|nuORF 1.4819007175156935 0.28806575819904134 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91551.7 NaN 18238 4104 22339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22345 89.483 NaN 54375 35 0 10035 0.261 + 16524 LTLLKTNL 8 36 458.2961870524022 NaN 0 458.29620361328125 PEAK HCD FTMS 0 0 0 22339 4848.998046875 0.30747329859012595 -1 0.0362091064453125 6 Unmodified _LTLLKTNL_ ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1 5.230669730166228 0.38822285293237185 1 {M(Oxidation (M))|F} 1 8 4.6041 0 0 0.50341 0 0 522.3716882143764 242.11402307681877 764.4857112911951 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50341 - 1 + NaN NaN 85589.8 NaN 18239 4104 22339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22347 89.488 NaN 2214200 35 0 205780 0.326 -1 0 98 611.3718650388877 610.3645885722876 1 611.3565673828125 MULTI HCD FTMS 0 0 0 22346 269798.875 0.623306351627656 -4 0.1116485595703125 1 NaN NaN 1 Q 1 -1 4.6041 0 0 0.75432 0 0 112.09641337873138 367.1968923836569 479.2933057623883 0 0 0 0 0 0 0 0 0 Q 0.75432 - 9 + NaN NaN 427123.1 NaN 18240 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22348 89.492 NaN 197880 35 0 32216 0.264 -1 LACCKGTG 8 57 426.191304372516 850.368055811832 2 426.19134521484375 MULTI HCD FTMS 0 0 0 22346 480516.5 1 0 0 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LAC(Carbamidomethyl (C))CKGTG_ ENST00000284136.10_1_7:84710854-84710890:-|nuORF 2.302733041254933 0.5385759549224092 1 {I|L}{I|L} 2 -1 9.464 0 0 1.1129 0 0 59.036393267040985 562.1417330377561 621.1781263047972 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1129 - 6 + NaN NaN 110740.1 NaN 18241 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22349 89.496 NaN 289330 35 0 93102 0.261 -1 0 36 405.1189366021065 808.223320271013 2 405.1190490722656 MULTI HCD FTMS 0 0 0 22346 279056.3125 0.7919645653184376 4 -0.1186370849609375 3 NaN NaN 1 V 1 -1 2.4743 0 0 0.30613 0 0 422.05206890558173 284.0746248834594 706.1266937890412 0 0 0 0 0 0 0 0 0 V 0.30613 - 4 + NaN NaN 139688.8 NaN 18242 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22350 89.499 NaN 321640 35 0 49059 0.261 + 4741 EYSLFPGQVVI 11 54 626.3348335368335 1250.6551141404668 2 626.334716796875 MULTI HCD FTMS 0 0 0 22346 184865.96875 0.8668988767864909 -2 0.05916595458984375 4 Unmodified _EYSLFPGQVVI_ ENSG00000014138|ENST00000265465|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2 27.223235318498237 0.2198854698817499 1 VEPQWVV{I|L} 8 7 51.363 0 0 4.1069 0 0 282.13316542793126 0 282.13316542793126 0 37.38351285388511 0 0 0 0.5 0 0.4247425010840047 0 VEPQWVV{I|L} 4.1069 - 133 NaN NaN 135487 NaN 18243 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22351 89.503 NaN 220150 35 0 54990 0.262 + 3620 ELAGSFPIVL 10 34 523.2998401187091 1044.585127304218 2 523.2820434570312 MULTI HCD FTMS 0 0 0 22346 76584.7578125 0.8555430451779593 2 -0.062896728515625 5 Unmodified _ELAGSFPIVL_ REV__ENSG00000138430|ENST00000284719|OLA1;REV__ENST00000392560.6_1_2:174940156-174989039:-|nuORF;REV__ENST00000396387.2_1_22:42503789-42504386:-|nuORF;REV__ENST00000462000.1_1_2:174945834-174988397:-|nuORF;REV__nc|ENSG00000138430|Q9NTK5-2|OLA1;REV__TMEM131-OLA1|1|fusion 9.38312468134398 0.42334543440173333 1 V{I|L} 2 -1 20.261 0 0 1.9396 0 0 814.4210964547715 0 814.4210964547715 0 9.291746928241125 0 0 0 0.3807196863200844 0 0 0 V{I|L} 1.9396 + + 16 NaN NaN 114887 NaN 18244 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22352 89.506 NaN 221570 35 0 17007 0.261 + 28658 TRWLLIIF 8 73 531.3297155807613 NaN 0 531.319091796875 PEAK HCD FTMS 0 0 0 22346 7089.8701171875 0.7659755152511383 -1 0.02295684814453125 6 Unmodified _TRWLLIIF_ REV__ENSG00000156113|ENST00000286628|KCNMA1;REV__nc|ENSG00000156113|Q12791-2|KCNMA1;REV__nc|ENSG00000156113|Q12791-3|KCNMA1;REV__nc|ENSG00000156113|Q12791-4|KCNMA1;REV__nc|ENSG00000156113|Q12791-5|KCNMA1;REV__nc|ENSG00000156113|Q12791-6|KCNMA1;REV__nc|ENSG00000156113|Q12791-7|KCNMA1 2.302733041254933 0.38822285293237185 1 R 1 -1 6.9897 0 0 0.659 0 0 669.3983203233533 232.11358057193596 901.5119008952893 0 0 0 0 0 0 0 0 0 R 0.659 + + 30 + NaN NaN 124219.8 NaN 18245 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22353 89.509 NaN 149930 35 0 16517 0.261 + 13544 KYPENFFLL 9 48 585.8135793710412 NaN 0 585.813232421875 PEAK HCD FTMS 0 0 0 22346 81556.703125 0.40346302551219293 97 -2.5421218872070312 7 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.19168101101984525 1 {I|L}{M(Oxidation (M))|F}Q 3 8 21.682 0 0 1.8538 0 0 131.0931552951884 647.2858980768186 778.3790533720071 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}Q 1.8538 - 18 + NaN NaN 108118 NaN 18246 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22354 89.513 NaN 299360 35 0 28520 0.261 + -1 KTGMYSFIN 9 59 538.7581299358452 1075.5017069384903 2 538.7587280273438 MULTI HCD FTMS 0 0 0 22346 45032.02734375 0.6830651819459177 2 -0.062896728515625 8 Oxidation (M) _KTGM(Oxidation (M))YSFIN_ REV__ENSG00000091127|ENST00000469408|PUS7;REV__nc|ENSG00000091127|Q96PZ0-2|PUS7 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}QV 3 -1 28.698 0 0 2.6683 0 0 683.2985096662125 0 683.2985096662125 0 14.093793813122062 0 0 0 0.5994850021680094 0 0 0 {M(Oxidation (M))|F}QV 2.6683 - 153 NaN NaN 131273.3 NaN 18247 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22355 89.516 NaN 278510 35 0 13822 0.261 -1 0 93 622.3475435385006 1242.6805341438012 2 622.34765625 MULTI HCD FTMS 0 0 0 22346 104152.015625 0.4419724175720419 -17 0.4163818359375 9 NaN NaN 1 [YN]{I|L}R[PG]{M(Oxidation (M))|F}SN 9 -1 23.941 0 0 1.9265 0 0 0 191.09865318212078 191.09865318212078 15.981902932666902 0 0 0 0 0 1.2218487496163564 0.3807196863200844 0 [YN]{I|L}R[PG]{M(Oxidation (M))|F}SN 1.9265 - 498 NaN NaN 118020.7 NaN 18248 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22356 89.519 NaN 119180 35 0 11183 0.261 + 19873 NYCNLFNYI 9 40 582.263113673037 1162.5116744128738 2 582.2637329101562 MULTI HCD FTMS 0 0 0 22346 91516.203125 0.563089355765241 -4 0.1116485595703125 10 Unmodified _NYCNLFNYI_ ENSG00000100129|ENST00000652021|EIF3L 64.23631603340823 0.01165516075559909 1 {M(Oxidation (M))|F}NY{I|L} 4 5 53.8 0 0 4.6279 0 0 607.2434168369804 0 607.2434168369804 0 39.10728139283883 0 0 0 1.4247425010840047 0 0 0.7614393726401688 + {M(Oxidation (M))|F}NY{I|L} 4.6279 + + 100 NaN NaN 99778.2 NaN 18249 4105 22346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22358 89.524 NaN 1226100 35 0 108350 0.327 + 3674 ELPEQFFQL 9 86 575.7925509527348 1149.5705489722695 2 575.792724609375 MULTI HCD FTMS 0 0 0 22357 457802.0625 0.5567142062035869 5 -0.138275146484375 1 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 106.94017166704063 0.003441928997083001 1 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 70.556 0 0 6.1376 6.1376 88.173 0 0 0 10.452738656163746 50.07515625508539 10.452738656163746 9.208187539523749 0 2.2614393726401687 0 1.8098943791441968 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[EP]Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[EP][AG]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG][EP]Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[EP]Q{I|L} 6.1376;5.3366;5.3366;4.9032;4.1022;4.1022;2.805;2.004;2.004;1.9891 +;-;-;-;-;-;-;-;-;- + 2103 NaN NaN 269501.8 NaN 18250 4106 22357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22359 89.529 NaN 1113700 35 0 153280 0.261 + 14494 LFAVFQTTF 9 74 537.2870183315613 1072.5594837299225 2 537.2869873046875 MULTI HCD FTMS 0 0 0 22357 289036.03125 0.16245359285759803 -4 0.11837005615234375 2 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 131.26759243768294 0.0005280990274065272 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 9 0 + 88.58 0 0 8.2588 8.2588 93.086 0 0 0 4.762036441594191 62.874467812752926 4.762036441594191 10.779550148593486 0 2.774227503252014 0 0.7742275032520141 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F} 8.2588;7.2537;7.097;6.092;3.4969;2.6384 +;-;-;-;-;- + 552 NaN NaN 243073.4 NaN 18251 4106 22357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22360 89.532 NaN 585960 35 0 66449 0.261 + 19672 NVTWVIVNL 9 70 529.3058723164294 1056.5971916996587 2 529.3057250976562 MULTI HCD FTMS 0 0 0 22357 94265.8046875 0.3761126879593547 -4 0.11837005615234375 3 Unmodified _NVTWVIVNL_ ENSG00000102753|ENST00000261667|KPNA3 133.0521902211835 0.0004198702180815479 1 {[QV]|[N{I|L}]|[RA]|[KV]}SWV{I|L}VN{I|L} 9 2 + 85.428 0 0 8.0852 8.0852 87.904 0 0 0 2.7422750325201406 16.478174818886373 2.7422750325201406 2.7422750325201406 0 2.1435078169319297 1.0969100130080565 1.2971062485323517 1.360924374808178 {[QV]|[N{I|L}]|[RA]|[KV]}SWV{I|L}VN{I|L};{[NV]|[RG]}TWV{I|L}VN{I|L};[KG]EWV{I|L}VN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}VN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}SWV{I|L}VGG{I|L};{[NV]|[RG]}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}VN{I|L};[VS]QWV{I|L}VN{I|L};{[NV]|[RG]}TWV{I|L}VGG{I|L};[KA]DWV{I|L}VN{I|L};[KG]EWV{I|L}VGG{I|L} 8.0852;7.8257;7.6969;7.3254;7.2137;7.0658;6.9962;6.9542;6.8539;6.8254 -;+;-;-;-;-;-;-;-;- + 365 NaN NaN 163700.1 NaN 18252 4106 22357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22361 89.536 NaN 89802 35 0 7257.4 0.261 + -1 LMKLWNEKPL 10 50 644.3603693130515 1286.7061856929029 2 644.360595703125 MULTI HCD FTMS 0 0 0 22357 49297.5625 0.42581191279601616 5 -0.138275146484375 4 Oxidation (M) _LM(Oxidation (M))KLWNEKPL_ REV__ENSG00000114346|ENST00000392692|ECT2;REV__nc|ENSG00000114346|Q9H8V3-2|ECT2;REV__nc|ENSG00000114346|Q9H8V3-3|ECT2;REV__nc|ENSG00000114346|Q9H8V3-4|ECT2 2.9952420565917617 0.4594494122822477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90969.6 NaN 18253 4106 22357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22362 89.543 NaN 149920 35 0 20104 0.264 + 18441 MPVILEVSL 9 39 500.79092453254486 NaN 0 500.7912292480469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MPVILEVSL_ ENSG00000136514|ENST00000259030|RTP4 32.30548876998284 0.10480114246275442 1 SVE 3 7 30.362 0 0 3.0375 0 0 131.09465497876857 550.3076876275999 681.4023426063684 0 0 0 0 0 1.305462187404089 0 0.3494850021680094 0 SVE 3.0375 - 24 + NaN NaN 103470.8 NaN 18254 4106 22357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22363 89.546 NaN 65005 35 0 4387.5 0.261 + 20692 PFPSDNLVS 9 39 488.24363614212564 974.4727193510513 2 488.2440490722656 MULTI HCD FTMS 0 0 0 22357 4690.9501953125 0.0892459573819156 5 -0.138275146484375 6 Unmodified _PFPSDNLVS_ REV__ENSG00000196199|ENST00000361479|MPHOSPH8;REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8 3.5964929083625545 0.32375295897743744 1 K 1 -1 3.4949 0 0 0.35864 0 0 432.1793366379638 411.1818941705688 843.3612308085326 0 0 0 0 0 0 0 0 0 K 0.35864 - 8 + NaN NaN 92800.4 NaN 18255 4106 22357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22365 89.551 NaN 1161100 35 0 217800 0.327 + 5241 FFDPSLLHLL 10 68 601.334649165231 1200.6547453972619 2 601.3347778320312 MULTI HCD FTMS 0 0 0 22364 681609.5625 0.4231870548548369 2 -0.0557403564453125 1 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 111.28704002717404 4.959301662581777E-05 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}DPS{I|L}{I|L}H{I|L}{I|L} 10 0 + 86.724 0 0 7.2231 7.2231 93.398 0 0 0 61.23060358348758 5.496812376923046 5.496812376923046 21.370294905625244 0 2.9876954943324545 0 0.7742275032520141 0 + + {M(Oxidation (M))|F}{M(Oxidation (M))|F}DPS{I|L}{I|L}H{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DPS{I|L}{I|L}H{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}PS{I|L}{I|L}H{I|L}{I|L};[H{I|L}]{I|L}[PS]{I|L}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}E;[H{I|L}]S[{I|L}P]{I|L}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}E 7.2231;5.4432;4.6953;2.1476;1.9628 +;+;-;-;- + 374 + NaN NaN 268923.3 NaN 18256 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22366 89.555 NaN 435890 35 0 63568 0.261 + 8326 GYFETPFSF 9 64 547.7452033898196 1093.4758538464391 2 547.7454223632812 MULTI HCD FTMS 0 0 0 22364 171400.140625 0.6520376576165527 -3 0.08585357666015625 2 Unmodified _GYFETPFSF_ ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant 71.13359017698441 0.008721403657255008 1 TEDS{M(Oxidation (M))|F} 5 6 57.779 0 0 5.284 0 0 496.2327518363973 0 496.2327518363973 0 38.39394387499517 0 0 0 2.1861818737241734 0 0.8494850021680094 0 TEDS{M(Oxidation (M))|F} 5.284 - 290 NaN NaN 146557.5 NaN 18257 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22367 89.559 NaN 247230 35 0 60626 0.261 + 2540 DSVLPLLTV 9 42 478.78507717048 955.55560140776 2 479.2700500488281 MULTI HCD FTMS 0 0 0 22364 21080.095703125 1 0 0 3 Unmodified _DSVLPLLTV_ REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF 10.823927491677226 0.26684000660059787 1 [VS]D[{I|L}P]{I|L}{I|L}{[TV]|[{I|L}S]} 9 -1 + 23.618 0 0 2.4717 2.4717 84.81 0 0 0 4.436974992327123 1.2224122066494694 1.2224122066494694 10.484550065040281 0 0 0 0.3494850021680094 0 [VS]D[{I|L}P]{I|L}{I|L}{[TV]|[{I|L}S]};[VS]D[{I|L}P]{I|L}S{I|L}{I|L} 2.4717;1.3745 -;- 46 + NaN NaN 120523.9 NaN 18258 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22368 89.562 NaN 81800 35 0 12697 0.261 + -1 FYWKRDMVL 9 45 637.3256498510619 1272.6367467689238 2 637.81201171875 MULTI HCD FTMS 0 0 0 22364 18448.35546875 1 0 0 4 Oxidation (M) _FYWKRDM(Oxidation (M))VL_ REV__ENST00000533478.5_1_16:81174978-81214887:-|nuORF;REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2;REV__nc|ENSG00000166473|Q7Z442|PKD1L2 3.944395688203298 0.32111559684428237 1 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.36178 0 0 653.9054368097426 455.6758211725219 1109.5812579822646 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.36178 - 2 + NaN NaN 97994.9 NaN 18259 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22369 89.566 NaN 91031 35 0 8123.4 0.262 + 30139 VGGLRPRPRA 10 44 539.8326966871316 1077.650840441063 2 540.3345947265625 MULTI HCD FTMS 0 0 0 22364 36201.1796875 0.3269149947824131 13 -0.32061767578125 5 Unmodified _VGGLRPRPRA_ REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|44|3|sense;REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|8|1|sense;REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|26|2|sense 1.844237919475145 0.46554186016084764 1 D 1 -1 9.877 0 0 0.91653 0 0 599.444707483835 360.15680872135005 959.6015162051851 0 0 0 0 0 0 0 0.28872548999643577 0 D 0.91653 - 13 + NaN NaN 94047.2 NaN 18260 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22370 89.569 NaN 167760 35 0 34347 0.261 + 14677 LGVAYSFLF 9 37 508.77624870781165 1015.5379444824233 2 508.7763366699219 MULTI HCD FTMS 0 0 0 22364 34216.296875 0.024692187003301908 27 -0.6446075439453125 6 Unmodified _LGVAYSFLF_ REV__ENSG00000157800|ENST00000326232|SLC37A3;REV__ENST00000460560.5_1_7:140055471-140082350:-|nuORF;REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF;REV__nc|ENSG00000157800|Q8NCC5-2|SLC37A3;REV__nc|ENSG00000157800|Q8NCC5-3|SLC37A3 24.67388899826682 0.14717941214954053 1 Q{I|L}{M(Oxidation (M))|F} 3 -1 36.242 0 0 3.5688 0 0 609.3165413966072 0 609.3165413966072 0 29.252509456924827 0 0 0 1.305462187404089 0 0 0 Q{I|L}{M(Oxidation (M))|F} 3.5688 - 42 NaN NaN 112189.9 NaN 18261 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22371 89.572 NaN 56951 35 0 4630.5 0.261 + 11674 IYWMVNYNF 9 40 625.2896728515625 NaN 0 625.2896728515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IYWMVNYNF_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 4.75600775471527 0.27219989241163056 1 C 1 9 2.7642 0 0 0.22139 0 0 707.30991650215 435.2249849908813 1142.5349014930314 0 0 0 0 0 0 0 0 0 C 0.22139 - 3 + NaN NaN 110827.7 NaN 18262 4107 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22373 89.577 NaN 1248300 35 0 56316 0.327 -1 0 122 619.8697049488608 1237.7248569645215 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22372 890654.875 0.40142340810957383 -23 0.5814971923828125 1 NaN NaN 1 {[HG]|PP}VV{M(Oxidation (M))|F}{I|L}SQ 8 -1 16.949 0 0 1.3694 0 0 0 367.1971834772094 367.1971834772094 5.491326321608751 0 0 0 0 0.6643943297944485 0 0 0.9749073637206092 {[HG]|PP}VV{M(Oxidation (M))|F}{I|L}SQ 1.3694 - 676 + NaN NaN 272019.4 NaN 18263 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22374 89.582 NaN 564340 35 0 22000 0.261 -1 0 109 641.8826294042019 1281.7507058752037 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22372 368566.03125 0.6227809877568788 7 -0.17678070068359375 2 NaN NaN 1 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 9 -1 24.108 0 0 1.8809 0 0 131.23000371166546 0 131.23000371166546 0 13.790390595936875 0 0 0 0 0 0.3807196863200844 0 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 1.8809 - 529 + NaN NaN 182711 NaN 18264 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22375 89.585 NaN 596930 35 0 27586 0.261 -1 0 93 589.3431010203685 1176.671649107537 2 589.34326171875 MULTI HCD FTMS 0 0 0 22372 378266.375 0.08265819317558047 59 -1.4992828369140625 3 NaN NaN 1 {I|L}{I|L}{I|L}QA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 7 -1 19.658 0 0 1.6707 0 0 326.1899435142935 0 326.1899435142935 0 -0.7749179983722598 -0.7749179983722598 0 0 0.5 0 0 0 {I|L}{I|L}{I|L}QA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.6707 - 615 + NaN NaN 183497 NaN 18265 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22376 89.588 NaN 284660 35 0 56264 0.261 + 20943 PLDGVTGFLVL 11 45 565.8267471224575 1129.638941311715 2 565.82666015625 MULTI HCD FTMS 0 0 0 22372 188962.9375 0.1282744073166731 7 -0.17678070068359375 4 Unmodified _PLDGVTGFLVL_ ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 13.042465956692817 0.3434429782671734 1 M{I|L}V{I|L} 4 8 41.938 0 0 3.7125 0 0 655.3373280255875 0 655.3373280255875 0 19.542425094393252 0 0 0 1 0 0 0 M{I|L}V{I|L} 3.7125 - 40 NaN NaN 135270.6 NaN 18266 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22377 89.592 NaN 387450 35 0 40892 0.261 + -1 IFAVKMNEQ 9 67 548.278395646346 1094.5422383594919 2 549.2992553710938 MULTI HCD FTMS 0 0 0 22372 6837.8369140625 0.12625559670825526 -2 0.0528106689453125 5 Oxidation (M) _IFAVKM(Oxidation (M))NEQ_ REV__ENSG00000181273|ENST00000326855|OR5AK2 29.081581746732265 0.1154664336125038 1 E{I|L}N{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A{[QN]|[E{I|L}]|[KN]} 9 -1 + 52.77 0 0 4.8212 4.8212 85.943 0 0 0 30.0202495894991 8.217196696094433 8.217196696094433 9.208187539523749 0 0.7302046884880937 0 0.7614393726401688 0.5 E{I|L}N{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A{[QN]|[E{I|L}]|[KN]};E{I|L}GG{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A{[QN]|[E{I|L}]|[KN]};E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Y{I|L}]VA{[QN]|[E{I|L}]|[KN]};{[QV]|[N{I|L}]|[RA]|[KV]}[YT]{[CA]|SS}VA[Q{I|L}];{[QV]|[N{I|L}]|[RA]|[KV]}[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}A[Q{I|L}];{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QA]A{[QN]|[E{I|L}]|[KN]};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RN{[QN]|[E{I|L}]|[KN]};[KA][YE]{[CA]|SS}VA[Q{I|L}] 4.8212;3.9799;1.9399;1.4469;1.1251;0.79501;0.40449;0.055538 -;-;-;-;-;-;-;- 216 + NaN NaN 136938.8 NaN 18267 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22378 89.595 NaN 71748 35 0 9913.1 0.261 -1 EEPQLRMKNN 10 42 637.8121236646053 1273.6096943960106 2 637.812255859375 MULTI HCD FTMS 0 0 0 22372 41159.1171875 0.4281095097398693 -5 0.14827728271484375 6 Oxidation (M) _EEPQLRM(Oxidation (M))KNN_ ENSG00000185010|ENST00000360256|F8;F8|p.I1213Ffs*5|1|0.47|ENSG00000185010|chrX:154930153-154930153|T/-|frameshift_variant 3.2813086475875832 0.45793521633868084 1 AS 2 -1 16.454 0 0 1.2919 0 0 1097.5017249303821 0 1097.5017249303821 0 13.68944035183194 0 0 0 0 0 0 0 AS 1.2919 - 2 NaN NaN 95130.3 NaN 18268 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22379 89.598 NaN 87202 35 0 10521 0.262 + 3715 ELYPLSCLL 9 37 525.7807101873108 1049.5468674414215 2 525.780029296875 MULTI HCD FTMS 0 0 0 22372 44295.203125 0.677937879056459 -2 0.0528106689453125 7 Unmodified _ELYPLSCLL_ REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF 10.823927491677226 0.26684000660059787 1 {I|L}{I|L} 2 -1 24.464 0 0 2.3309 0 0 805.3661366193375 0 805.3661366193375 0 24.463950151760656 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.3309 + + 4 NaN NaN 113077 NaN 18269 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22380 89.602 NaN 115440 35 0 10485 0.261 + 12788 KYDVLFALF 9 55 558.3103241922371 1114.606095451274 2 558.31103515625 MULTI HCD FTMS 0 0 0 22372 34854.62109375 0.005877051536721096 70 -1.8117904663085938 8 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 4 5 37.356 0 0 3.3515 0 0 618.336717674025 0 618.336717674025 0 30.36658945444961 0 0 0 1.1694451763165201 0 0 0 + {M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 3.3515 + + 18 NaN NaN 95001.1 NaN 18270 4108 22372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22382 89.607 NaN 704860 35 0 33023 0.327 -1 0 93 633.3694581930936 1264.724363452987 2 633.369384765625 MULTI HCD FTMS 0 0 0 22381 894815.1875 0.6730754458094798 2 -0.055938720703125 1 NaN NaN 1 N 1 -1 9.1182 0 0 0.72096 0 0 238.1413621464531 909.4924689573633 1147.6338311038164 0 0 0 0 0 0.6643943297944485 0 0 0 N 0.72096 - 174 + NaN NaN 189015.6 NaN 18271 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22383 89.611 NaN 264680 35 0 27506 0.261 -1 0 75 597.8562607199011 1193.6979685066021 2 597.8567504882812 MULTI HCD FTMS 0 0 0 22381 230586.203125 0.12044763554156981 54 -1.3518218994140625 2 NaN NaN 1 A 1 -1 5.7268 0 0 0.47975 0 0 193.13078208257713 926.5165499322874 1119.6473320148646 0 0 0 0 0 0.3252574989159953 0 0 0 A 0.47975 - 113 + NaN NaN 138590.3 NaN 18272 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22384 89.615 NaN 251540 35 0 13525 0.264 -1 0 70 422.5817485628112 1264.7234162886336 3 422.5816955566406 MULTI HCD FTMS 0 0 0 22381 128456.0390625 0.6369658104096184 -1 0.0295257568359375 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.0357 0 0 1099.6444958558195 0 1099.6444958558195 0 -4.648415687162952 -4.648415687162952 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0357 - 2 + NaN NaN 135288.8 NaN 18273 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22385 89.618 NaN 313920 35 0 44001 0.261 -1 0 67 407.9063024768881 1220.6970780308643 3 407.9063415527344 MULTI HCD FTMS 0 0 0 22381 131448.484375 0.3597359232155412 -21 0.5350189208984375 4 NaN NaN 1 Q 1 -1 7.2185 0 0 0.59134 0 0 766.4525234427769 323.1699312799438 1089.6224547227207 0 0 0 0 0 0.5 0 0 0 Q 0.59134 - 13 + NaN NaN 133790.8 NaN 18274 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22386 89.621 NaN 142760 35 0 11886 0.261 + 1931 DADLVVFLS 9 36 489.75993721332054 977.5053214934411 2 489.7605285644531 MULTI HCD FTMS 0 0 0 22381 55074.30859375 1 0 0 5 Unmodified _DADLVVFLS_ ENSG00000089127|ENST00000202917|OAS1;ENSG00000111331|ENST00000228928|OAS3;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1;nc|ENSG00000089127|P00973-4|OAS1 13.90604991867851 0.24021115267848145 1 WD[{I|L}P]{I|L}{I|L} 6 6 41.688 0 0 4.2647 0 0 0 237.0853670709594 237.0853670709594 20.233871898888154 0 0 0 0 2.2302046884880937 0 0 0 WD[{I|L}P]{I|L}{I|L} 4.2647 - 33 + NaN NaN 100942.1 NaN 18275 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22387 89.625 NaN 106280 35 0 27938 0.261 -1 0 38 606.3694677211702 1210.7243825091402 2 606.369873046875 MULTI HCD FTMS 0 0 0 22381 67894.5078125 0.09083766688193301 67 -1.7232666015625 6 NaN NaN 1 {I|L}{[WT]|[RM]} 3 -1 7.4473 0 0 0.61511 0 0 792.5050049230059 0 792.5050049230059 0 7.447274948966937 0 0 0 0 0 0 0 {I|L}{[WT]|[RM]} 0.61511 - 5 + NaN NaN 105936.1 NaN 18276 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22388 89.628 NaN 58227 35 0 11696 0.264 + 22603 QTSPELEHRME 11 41 452.88055713304715 NaN 0 452.8701477050781 PEAK HCD FTMS 0 0 0 22381 5505.8681640625 0.18811865430045965 14 -0.34294891357421875 7 Unmodified _QTSPELEHRME_ ENST00000561302.5_1_15:76430142-76521275:+|nuORF 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105448.3 NaN 18277 4109 22381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22390 89.633 NaN 3158400 35 0 348370 0.327 -1 0 104 611.3718650388877 610.3645885722876 1 611.3568725585938 MULTI HCD FTMS 0 0 0 22389 431549.90625 0.996993770303692 1 -0.02959442138671875 1 NaN NaN 1 V 1 -1 2.4743 0 0 0.40537 0 0 284.17082271054437 224.0978182428344 508.26864095337874 0 0 0 0 0 0 0 0 0 V 0.40537 - 29 + NaN NaN 555431.2 NaN 18278 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22391 89.637 NaN 1789000 35 0 288490 0.261 + 21202 PQPDVFPLF 9 89 530.2790278075877 1058.5435026819753 2 530.2792358398438 MULTI HCD FTMS 0 0 0 22389 687679.5625 0.2464613140645535 -8 0.22705078125 2 Unmodified _PQPDVFPLF_ ENSG00000275700|ENST00000619387|AATF 51.629811660486645 0.02929079705179888 1 [QP][DP]V{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9 0 + 52.954 0 0 5.0026 5.0026 84.143 0 0 0 3.0893153899759795 17.187901355121028 3.0893153899759795 6.047575072713158 0 1.9291746928241125 0 0.6549471895720984 0 + + [QP][DP]V{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[DP][QP]V{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[DP]V[QP]{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[{I|L}P]YYQ[KT]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]E[YG][KG]{I|L}{M(Oxidation (M))|F};[{I|L}P]T[C(Carbamidomethyl (C))K]{I|L}VDN;[{M(Oxidation (M))|F}V]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[KG]{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVGY[KT]{M(Oxidation (M))|F};{[NV]|[RG]}[YK][{M(Oxidation (M))|F}E]{I|L}{M(Oxidation (M))|F};[MD]VQQ{I|L}V{I|L}N 5.0026;4.4312;4.3801;3.0151;2.2927;2.1389;2.0083;1.6924;1.1027;0.24041 +;-;-;-;-;-;-;-;-;- + 1697 NaN NaN 348552 NaN 18279 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22392 89.641 NaN 180100 35 0 25204 0.262 -1 0 57 426.191304372516 850.368055811832 2 426.19140625 MULTI HCD FTMS 0 0 0 22389 264723.25 0.5509139644528336 5 -0.12091064453125 3 NaN NaN 1 {I|L} 1 -1 5.4846 0 0 0.64496 0 0 172.12120884494692 562.1395357721311 734.260744617078 0 0 0 0 0 0 0 0 0 {I|L} 0.64496 - 4 + NaN NaN 105118.3 NaN 18280 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22393 89.644 NaN 621050 35 0 66518 0.261 + -1 IFAVKMNEQ 9 74 548.278395646346 1094.5422383594919 2 549.2991943359375 MULTI HCD FTMS 0 0 0 22389 54158.68359375 1 0 0 4 Oxidation (M) _IFAVKM(Oxidation (M))NEQ_ REV__ENSG00000181273|ENST00000326855|OR5AK2 38.175570920033316 0.07371992880350783 1 E{I|L}N{I|L}E 5 -1 55.86 0 0 5.1035 0 0 0 493.20968438123003 493.20968438123003 24.216590673155736 0 0 0 0 0 0 1.4163865622122673 0.8252574989159953 E{I|L}N{I|L}E 5.1035 - 505 + NaN NaN 189596.3 NaN 18281 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22394 89.648 NaN 560880 35 0 98862 0.261 + 20439 PAIWKSIFLW 10 77 630.8611131807195 1259.7076734282389 2 630.8604125976562 MULTI HCD FTMS 0 0 0 22389 78470.09375 0.4324175342565775 1 -0.02959442138671875 5 Unmodified _PAIWKSIFLW_ ENSG00000157219|ENST00000287907|HTR5A 3.5964929083625545 0.45626689593999237 1 {M(Oxidation (M))|F} 1 9 2.7642 0 0 0.21943 0 0 519.3276207932764 590.3338717096311 1109.6614925029075 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.21943 + + 47 + NaN NaN 173159.2 NaN 18282 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22395 89.651 NaN 264710 35 0 59702 0.261 -1 WFPASSMLL 9 50 555.2703309496736 1108.5261089661471 2 555.270263671875 MULTI HCD FTMS 0 0 0 22389 111108.3984375 0.3211460910969988 9 -0.2190093994140625 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WFPASSM(Oxidation (M))LL_ chr2:142883035-142885349|162|16.54|0.23|6.19|+|2|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|5 11.640296217721598 0.25978676193971967 1 E{I|L}{I|L} 3 -1 28.812 0 0 2.5992 0 0 735.3032704084 0 735.3032704084 0 17.614393726401687 0 0 0 0.5 0 0 0 E{I|L}{I|L} 2.5992 - 51 NaN NaN 124085.8 NaN 18283 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22396 89.654 NaN 297290 35 0 104260 0.264 -1 0 42 405.1189366021065 808.223320271013 2 405.1190490722656 MULTI HCD FTMS 0 0 0 22389 120140.671875 0.3409604109154471 9 -0.2190093994140625 7 NaN NaN 1 D 1 -1 7.3464 0 0 0.90895 0 0 392.15634637178437 298.01218591861567 690.1685322904 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.90895 - 9 + NaN NaN 129070.2 NaN 18284 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22397 89.658 NaN 205370 35 0 50236 0.261 + 22761 QYILAVPVL 9 53 508.31297389239216 1014.6113948515844 2 508.31280517578125 MULTI HCD FTMS 0 0 0 22389 83886.8828125 0.9677067319451736 -2 0.05587005615234375 8 Unmodified _QYILAVPVL_ ENSG00000164953|ENST00000453321|TMEM67 11.640296217721598 0.25978676193971967 1 V[VP]{I|L} 4 5 20.177 0 0 1.9887 0 0 588.3268386551395 0 588.3268386551395 0 0.25576261223690366 0 0 0 0.8494850021680094 0 0 0 + V[VP]{I|L} 1.9887 + + 18 NaN NaN 109546.4 NaN 18285 4110 22389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22399 89.663 NaN 987810 35 0 98263 0.327 + 3675 ELPEQFFQL 9 83 575.7925509527348 1149.5705489722695 2 575.7926025390625 MULTI HCD FTMS 0 0 0 22398 256787.046875 0.3122681365472854 10 -0.23508453369140625 1 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 76.82478488871298 0.006879825292024087 1 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 63.254 0 0 5.5024 5.5024 83.8 0 0 0 6.096004365006792 45.34240820723461 6.096004365006792 3.4678748622465605 0 2.305462187404089 0 1.336696871556164 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]GA{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]GA{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L} 5.5024;5.2008;4.7014;4.6486;4.4036;3.8476;3.8476;3.4279;2.9975;2.6269 +;-;-;-;-;-;-;-;-;- + 2286 NaN NaN 232885.7 NaN 18286 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22400 89.667 NaN 291620 35 0 20829 0.261 -1 0 70 622.3475435385006 1242.6805341438012 2 622.3474731445312 MULTI HCD FTMS 0 0 0 22398 180615.125 0.7664460737250043 -11 0.30251312255859375 2 NaN NaN 1 G{I|L}{[TV]|[{I|L}S]}PYP 7 -1 7.5283 0 0 0.60581 0 0 220.13371121126164 292.1217440240844 512.2554552353461 0 0 0 0 0 0 0 0.3494850021680094 0 G{I|L}{[TV]|[{I|L}S]}PYP 0.60581 - 605 + NaN NaN 128286.9 NaN 18287 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22401 89.671 NaN 242880 35 0 24707 0.261 + 19874 NYCNLFNYI 9 44 582.263113673037 1162.5116744128738 2 582.2637329101562 MULTI HCD FTMS 0 0 0 22398 122385.3125 0.7530236659471629 2 -0.045654296875 3 Unmodified _NYCNLFNYI_ ENSG00000100129|ENST00000652021|EIF3L 103.74828524460852 0.00396301343438984 1 [YN]CN{I|L}{M(Oxidation (M))|F}NY{I|L} 9 0 + 100.87 0 0 8.6768 8.6768 92.508 0 0 0 22.376430167995878 89.89963434401865 22.376430167995878 9.208187539523749 0 2.305462187404089 1.5228787452803376 0 1.274227503252014 + + [YN]CN{I|L}{M(Oxidation (M))|F}NY{I|L};[YN]CGG{I|L}{M(Oxidation (M))|F}NY{I|L};[YN]CN{I|L}{M(Oxidation (M))|F}GGY{I|L};[YN]CGG{I|L}{M(Oxidation (M))|F}GGY{I|L};[YN]CKK[EC]Y{I|L} 8.6768;7.8847;7.8847;7.0964;3.9966 +;-;-;-;- + 234 NaN NaN 134064.7 NaN 18288 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22402 89.674 NaN 272170 35 0 35400 0.261 -1 SPMDIFDMF 9 63 567.7280266647355 1133.4415003962708 2 567.7281494140625 MULTI HCD FTMS 0 0 0 22398 91250.125 0.4807485574064441 -5 0.138275146484375 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 50.433 0 0 4.4496 0 0 559.2323154092949 0 559.2323154092949 0 32.47425010840047 0 0 0 1.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4496 + + 72 + NaN NaN 117257.2 NaN 18289 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22403 89.677 NaN 155470 35 0 15278 0.261 + -1 FLGTFVMNLI 10 48 585.8135793710412 NaN 0 585.8135986328125 PEAK HCD FTMS 0 0 0 22398 105587.140625 0.5223421935834153 103 -2.6754074096679688 5 Oxidation (M) _FLGTFVM(Oxidation (M))NLI_ REV__ENSG00000102001|ENST00000323022|CACNA1F;REV__nc|ENSG00000102001|O60840-4|CACNA1F;REV__nc|ENSG00000102001|O60840-5|CACNA1F;REV__nc|ENSG00000102001|O60840-6|CACNA1F;REV__nc|ENSG00000102001|O60840-7|CACNA1F;REV__nc|ENSG00000102001|O60840|CACNA1F 21.536976647645854 0.26818477760186155 1 {I|L}N 2 -1 18.711 0 0 1.5998 0 0 131.09507719844652 808.3671969049436 939.4622741033902 0 0 0 0 0 0.5 0 0 0.4247425010840047 {I|L}N 1.5998 - 52 + NaN NaN 116290.1 NaN 18290 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22404 89.681 NaN 420130 35 0 129950 0.261 -1 PQAPHLCKM 9 67 541.2701098806115 1080.5256668280228 2 541.2704467773438 MULTI HCD FTMS 0 0 0 22398 107463.2265625 0.324714800012993 -7 0.19753265380859375 6 Carbamidomethyl (C) _PQAPHLC(Carbamidomethyl (C))KM_ ENST00000374358.4_1_1:25688070-25688178:+|nuORF 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F} 1 -1 18.099 0 0 1.675 0 0 915.4469752770448 0 915.4469752770448 0 4.030899869919438 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 1.675 + + 54 + NaN NaN 147089.8 NaN 18291 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22405 89.684 NaN 75709 35 0 11438 0.261 + 33041 YCWAAVQQ 8 37 484.7183004402408 NaN 0 484.7183532714844 PEAK HCD FTMS 0 0 0 22398 17975.203125 0.4891108796817414 5 -0.11093902587890625 7 Unmodified _YCWAAVQQ_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 0.7936320650641473 0.38822285293237185 1 K 1 8 2.7642 0 0 0.28573 0 0 696.3547394529442 139.95337854556877 836.3081179985129 0 0 0 0 0 0 0 0 0 K 0.28573 - 2 + NaN NaN 86150.5 NaN 18292 4111 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22407 89.689 NaN 2339500 35 0 344580 0.326 + 14495 LFAVFQTTF 9 73 537.2870183315613 1072.5594837299225 2 537.2870483398438 MULTI HCD FTMS 0 0 0 22406 1437977.125 0.8082194783571273 2 -0.0390625 1 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 147.05914393524117 1.1935124485855994E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 9 0 + 93.396 0 0 8.7077 8.7077 91.343 0 0 0 5.59817081947152 49.90463059526341 5.59817081947152 8.226825097560422 0 3.024227503252014 0 0.7742275032520141 0.3807196863200844 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{M(Oxidation (M))|F}VQTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{M(Oxidation (M))|F}V[AG]TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};[DP]V[PS][W{I|L}]{I|L}{M(Oxidation (M))|F} 8.7077;7.9407;7.4943;7.3996;6.7272;6.1861;5.4168;4.3026;2.5705 +;-;-;-;-;-;-;-;- + 899 NaN NaN 436003 NaN 18293 4112 22406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22408 89.693 NaN 647490 35 0 117210 0.261 + 5242 FFDPSLLHLL 10 62 601.334649165231 1200.6547453972619 2 601.3346557617188 MULTI HCD FTMS 0 0 0 22406 275580.40625 0.171098040451328 7 -0.16326904296875 2 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 111.28704002717404 4.959301662581777E-05 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}DPS{I|L}{I|L}H{I|L}{I|L} 10 0 + 81.807 0 0 6.8135 6.8135 91.867 0 0 0 68.44212497064703 2.8554434910878257 2.8554434910878257 15.87205316164642 0 3.024227503252014 0 0.7742275032520141 0 + + {M(Oxidation (M))|F}{M(Oxidation (M))|F}DPS{I|L}{I|L}H{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DPS{I|L}{I|L}H{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}PS{I|L}{I|L}H{I|L}{I|L};[H{I|L}]{I|L}{I|L}[PS][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}E 6.8135;5.4916;4.8244;1.2999 +;+;-;- + 291 + NaN NaN 180779 NaN 18294 4112 22406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22409 89.697 NaN 535690 35 0 51606 0.261 + -1 IFAVKMNEQ 9 82 548.278395646346 1094.5422383594919 2 549.29931640625 MULTI HCD FTMS 0 0 0 22406 23983.875 0.44284449710605184 2 -0.0390625 3 Oxidation (M) _IFAVKM(Oxidation (M))NEQ_ REV__ENSG00000181273|ENST00000326855|OR5AK2 32.78568957990786 0.09846250359632436 1 E{I|L}N{I|L}E 5 -1 50.041 0 0 4.5718 0 0 0 493.2097567193969 493.2097567193969 16.9193800377178 0 0 0 0 0 0 1.3996498648046138 0.8252574989159953 E{I|L}N{I|L}E 4.5718 - 331 + NaN NaN 161028.5 NaN 18295 4112 22406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22410 89.7 NaN 391160 35 0 55131 0.261 + 32286 VYTVVDEMFL 10 50 608.3025331799707 1214.5905134267414 2 608.30322265625 MULTI HCD FTMS 0 0 0 22406 125232.21875 0.11789296881582409 -7 0.20072174072265625 4 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 118.89474601620944 4.021404175452203E-05 1 [YV]TVVDEM{M(Oxidation (M))|F}{I|L} 10 0 + 99.206 0 0 8.1679 8.1679 95.757 0 0 0 4.884381005764311 87.23369673699789 4.884381005764311 32.19531317077467 0 2.8494850021680094 0 2.0356668758921828 0 + + [YV]TVVDEM{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}EDVV[MT]{I|L} 8.1679;5.5172 +;- + 296 NaN NaN 138412.3 NaN 18296 4112 22406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22411 89.703 NaN 82721 35 0 10561 0.262 + 34148 YPASTVQIL 9 38 496.2763366699219 NaN 0 496.2763366699219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YPASTVQIL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 13.90604991867851 0.22786006501039813 1 QV 2 8 20.005 0 0 2.0196 0 0 244.1810657209 516.2099703424436 760.3910360633436 0 0 0 0 0 1.1421590589602533 0 0 0 QV 2.0196 - 15 + NaN NaN 117238.8 NaN 18297 4112 22406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22413 89.708 NaN 1131300 35 0 58238 0.327 -1 0 121 619.8697049488608 1237.7248569645215 2 619.869384765625 MULTI HCD FTMS 0 0 0 22412 1326507.875 0.5978649272724056 -18 0.47618865966796875 1 NaN NaN 1 RA[RV]{[SA]|[TG]} 6 -1 13.262 0 0 1.0714 0 0 579.3327503888687 0 579.3327503888687 0 4.212046717774529 0 0 0 0.6861818737241735 0 0 0.8494850021680094 RA[RV]{[SA]|[TG]} 1.0714 - 259 NaN NaN 259224.5 NaN 18298 4113 22412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22414 89.713 NaN 482580 35 0 54114 0.261 + -1 IFAVKMNEQ 9 73 548.278395646346 1094.5422383594919 2 548.2782592773438 MULTI HCD FTMS 0 0 0 22412 154021.296875 0.7043146382087445 3 -0.06528472900390625 2 Oxidation (M) _IFAVKM(Oxidation (M))NEQ_ REV__ENSG00000181273|ENST00000326855|OR5AK2 38.175570920033316 0.07371992880350783 1 {I|L}{M(Oxidation (M))|F}AV[WD]PT{M(Oxidation (M))|F} 9 -1 + 81.973 0 0 7.4892 7.4892 93.062 0 0 0 52.543096649567076 12.191512336730028 12.191512336730028 15.796896906561031 0 2.305462187404089 1.3010299956639813 0.3054621874040891 0 {I|L}{M(Oxidation (M))|F}AV[WD]PT{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}AV[PA]E[WY];{I|L}[{M(Oxidation (M))|F}E]Q{M(Oxidation (M))|F}VA{[QN]|[E{I|L}]|[KN]};{I|L}[{M(Oxidation (M))|F}E][AG]{M(Oxidation (M))|F}VA{[QN]|[E{I|L}]|[KN]};{I|L}{M(Oxidation (M))|F}A[{I|L}A][DP][WY];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{[QG]|[NA]}D[KA]{M(Oxidation (M))|F} 7.4892;6.046;4.742;3.9007;3.7152;3.0739 -;-;-;-;-;- 412 + NaN NaN 160000.6 NaN 18299 4113 22412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22415 89.716 NaN 653350 35 0 83189 0.261 + 21939 QEDSSHRDLCV 11 72 644.7830043818195 1287.551455830439 2 644.783203125 MULTI HCD FTMS 0 0 0 22412 100412.0546875 0.3329404265888075 -4 0.101593017578125 3 Unmodified _QEDSSHRDLCV_ REV__ENSG00000178295|ENST00000381254|GEN1 10.150570793230772 0.3686401556411756 1 [YG]{I|L}D{I|L}E{I|L}P 8 -1 83.977 0 0 6.5222 0 0 0 384.06809412174067 384.06809412174067 78.49275660196689 0 0 0 0 2.774227503252014 2 0.3494850021680094 0 [YG]{I|L}D{I|L}E{I|L}P 6.5222 - 216 + NaN NaN 204589.8 NaN 18300 4113 22412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22416 89.72 NaN 154600 35 0 38609 0.264 + 20580 PEGVEIISI 9 49 478.7687156252681 955.5228783173362 2 478.76861572265625 MULTI HCD FTMS 0 0 0 22412 99198.5234375 0.5208735246633446 4 -0.09809112548828125 4 Unmodified _PEGVEIISI_ ENSG00000172869|ENST00000539542|DMXL1;ENST00000512281.1_1_5:118470015-118483170:+|nuORF;nc|ENSG00000172869|Q9Y485|DMXL1 24.020572477871973 0.15282392193088168 1 {I|L}{I|L}S{I|L} 4 5 45.745 0 0 4.7875 0 0 511.22715956855626 0 511.22715956855626 0 38.75569708000178 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}S{I|L} 4.7875 + + 35 NaN NaN 108149.5 NaN 18301 4113 22412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22417 89.723 NaN 65699 35 0 7553.2 0.261 + 112 ADREELNYWI 10 43 436.87992861314353 1307.6179564396307 3 437.2152404785156 MULTI HCD FTMS 0 0 0 22412 44055.47265625 1 0 0 5 Unmodified _ADREELNYWI_ ENSG00000079102|ENST00000436581|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1 0.776531954647913 0.4711933975711956 1 K 1 10 3.9794 0 0 0.30432 0 0 871.3889352988089 305.10056482486567 1176.4895001236746 0 0 0 0 0 0 0 0 0 K 0.30432 - 6 + NaN NaN 86049.7 NaN 18302 4113 22412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22419 89.728 NaN 527860 35 0 34892 0.326 -1 0 94 589.3431010203685 1176.671649107537 2 589.3433227539062 MULTI HCD FTMS 0 0 0 22418 255986.09375 0.05593769202311401 65 -1.6973419189453125 1 NaN NaN 1 {M(Oxidation (M))|F}AQYSK 6 -1 22.607 0 0 1.9213 0 0 166.18629399194612 283.11875330142817 449.3050472933743 0 0 0 0 0 0.5484550065040282 0 0.28872548999643577 0.3054621874040891 {M(Oxidation (M))|F}AQYSK 1.9213 - 565 + NaN NaN 173690 NaN 18303 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22420 89.732 NaN 302740 35 0 11094 0.261 -1 0 91 641.8826294042019 1281.7507058752037 2 641.882568359375 MULTI HCD FTMS 0 0 0 22418 264846.5 0.4475218845170019 13 -0.33608245849609375 2 NaN NaN 1 {I|L}{[{M(Oxidation (M))|F}D]|MM}WMK 6 -1 17.708 0 0 1.3816 0 0 131.22723088172967 327.1445406549438 458.37177153667346 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L}{[{M(Oxidation (M))|F}D]|MM}WMK 1.3816 - 168 + NaN NaN 133575.1 NaN 18304 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22421 89.736 NaN 792780 35 0 64868 0.261 + 3676 ELPEQFFQL 9 78 575.7925509527348 1149.5705489722695 2 576.2742309570312 MULTI HCD FTMS 0 0 0 22418 104213.546875 0.20781537620168933 13 -0.33608245849609375 3 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 76.82478488871298 0.006879825292024087 1 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 65.657 0 0 5.7114 5.7114 87.491 0 0 0 12.653923491779778 30.92043835652005 12.653923491779778 9.208187539523749 0 2.1861818737241734 0 1.4436726795685342 0.3494850021680094 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{NN|[MP]|[D{I|L}]|[EV]}Q{I|L} 5.7114;4.9104;4.9104;2.1403 +;-;-;- + 1229 NaN NaN 220099.2 NaN 18305 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22422 89.739 NaN 111450 35 0 21855 0.261 -1 PMHKMMRKPS 10 42 637.8121236646053 1273.6096943960106 2 637.8117065429688 MULTI HCD FTMS 0 0 0 22418 62243.7734375 0.6474179513932905 1 -0.0261077880859375 4 2 Oxidation (M) _PM(Oxidation (M))HKM(Oxidation (M))MRKPS_ ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118382.5 NaN 18306 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22423 89.742 NaN 358790 35 0 41897 0.261 + -1 EVWCGCFI 8 61 556.7303274860833 1111.4461020389665 2 556.732666015625 MULTI HCD FTMS 0 0 0 22418 77308.03125 0.01964814320508872 -11 0.2989501953125 5 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))EVWC(Carbamidomethyl (C))GC(Carbamidomethyl (C))FI_ REV__L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|43|3|anti-sense 10.183394434864962 0.5188676124868831 1 {M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 4 -1 25.445 0 0 2.2894 0 0 589.173631736525 0 589.173631736525 0 9.247425010840047 0 0 0 0.8252574989159953 0 0.25 0 {M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 2.2894 - 49 NaN NaN 146813.2 NaN 18307 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22424 89.746 NaN 73744 35 0 9351 0.261 -1 YMDLGIPIL 9 30 525.7807101873108 1049.5468674414215 2 525.7806396484375 MULTI HCD FTMS 0 0 0 22418 26421.373046875 0.4043789923394313 4 -0.0914154052734375 6 Oxidation (M) _YM(Oxidation (M))DLGIPIL_ ARID4A|p.D569Wfs*5|1|0.31|ENSG00000032219|chr14:58353706-58353709|AGAC/-|frameshift_variant;ENSG00000032219|ENST00000355431|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;nc|ENSG00000032219|P29374-3|ARID4A 7.289230182591677 0.29575926068275815 1 {I|L}{I|L} 2 -1 25.969 0 0 2.4743 0 0 805.3645719875504 0 805.3645719875504 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4743 + + 2 NaN NaN 100127.5 NaN 18308 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22425 89.749 NaN 171040 35 0 55514 0.261 + -1 ELVFCPIEL 9 58 560.2923542878003 1118.5701556424006 2 560.7898559570312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _ELVFC(Carbamidomethyl (C))PIEL_ REV__ENSG00000100078|ENST00000215885|PLA2G3 6.723162845929126 0.3000504726104499 1 NE{I|L} 3 -1 21.682 0 0 1.9384 0 0 744.3941517560562 0 744.3941517560562 0 6.9897000433601875 0 0 0 0 0 0 0 NE{I|L} 1.9384 - 57 NaN NaN 107902.7 NaN 18309 4114 22418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22427 89.754 NaN 477270 35 0 23548 0.326 -1 0 89 633.3694581930936 1264.724363452987 2 633.3692626953125 MULTI HCD FTMS 0 0 0 22426 552673.125 0.41571792163652044 8 -0.1956939697265625 1 NaN NaN 1 Q 1 -1 7.0116 0 0 0.5544 0 0 722.4309807398996 411.2233257104767 1133.6543064503762 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.5544 - 118 + NaN NaN 151322.1 NaN 18310 4115 22426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22428 89.758 NaN 334890 35 0 36225 0.264 + 22392 QPRPQRRQR 9 77 407.9063024768881 1220.6970780308643 3 407.906494140625 MULTI HCD FTMS 0 0 0 22426 137692.546875 0.37682408972223885 -15 0.393829345703125 2 Unmodified _QPRPQRRQR_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 2.498486711656943 0.33207666356665205 1 Y 1 -1 6.2591 0 0 0.51274 0 0 850.476912221047 204.13331018619377 1054.6102224072408 0 0 0 0 0 0.5 0 0 0 Y 0.51274 - 17 + NaN NaN 140689.4 NaN 18311 4115 22426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22429 89.762 NaN 256340 35 0 47326 0.261 -1 0 70 597.8562607199011 1193.6979685066021 2 597.856689453125 MULTI HCD FTMS 0 0 0 22426 75626.0546875 0.03950357544813243 60 -1.5565032958984375 3 NaN NaN 1 W{I|L} 2 -1 7.0783 0 0 0.59298 0 0 275.2559651880459 616.2785738580686 891.5345390461146 0 0 0 0 0 0 0 0 0 W{I|L} 0.59298 - 20 + NaN NaN 124349.7 NaN 18312 4115 22426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22430 89.765 NaN 198750 35 0 10586 0.264 + 11692 KAFRLHMHLI 10 61 422.5817485628112 1264.7234162886336 3 422.5818786621094 MULTI HCD FTMS 0 0 0 22426 94316.65625 0.46768128475592 5 -0.11762237548828125 4 Unmodified _KAFRLHMHLI_ ENSG00000128000|ENST00000434248|ZNF780B;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A 0.6976657623105312 0.47161084886498755 1 Q 1 10 8.9794 0 0 0.70999 0 0 634.3652142396087 499.2762850397094 1133.6414992793182 0 0 0 0 0 0.5 0 0 0 Q 0.70999 - 4 + NaN NaN 107107.3 NaN 18313 4115 22426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22431 89.769 NaN 195450 35 0 26875 0.261 + 20860 PIGVEGIQVL 10 45 512.8055478564038 1023.5965427796076 2 512.8054809570312 MULTI HCD FTMS 0 0 0 22426 51954.24609375 0.25049136682241496 -6 0.14725494384765625 5 Unmodified _PIGVEGIQVL_ ENSG00000174498|ENST00000327987|IGDCC3 20.41453444215458 0.3201613495159799 1 {I|L}QV{I|L} 4 6 46.938 0 0 4.5856 0 0 552.2908321429883 0 552.2908321429883 0 45.67914039519213 0 0 0 1.5 0 0 0 + {I|L}QV{I|L} 4.5856 + + 25 NaN NaN 118628.7 NaN 18314 4115 22426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22433 89.774 NaN 3323400 35 0 556210 0.327 -1 0 89 611.3718650388877 610.3645885722876 1 611.356689453125 MULTI HCD FTMS 0 0 0 22432 242161.40625 0.5594565308499162 7 -0.1760711669921875 1 NaN NaN 1 V 1 -1 1.9897 0 0 0.32599 0 0 284.17079893104 224.09774194888908 508.2685408799291 0 0 0 0 0 0 0 0 0 V 0.32599 - 25 + NaN NaN 437240.1 NaN 18315 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22434 89.778 NaN 4838100 35 0 846170 0.261 + 21203 PQPDVFPLF 9 104 530.2790278075877 1058.5435026819753 2 530.2793579101562 MULTI HCD FTMS 0 0 0 22432 2340374 0.8387796917296279 -2 0.0457305908203125 2 Unmodified _PQPDVFPLF_ ENSG00000275700|ENST00000619387|AATF 88.95385435242217 0.004553379958619559 1 [QP]DPV{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9 2 + 78.244 0 0 7.3917 7.3917 88.962 0 0 0 7.486964716146787 16.478174818886373 7.486964716146787 7.486964716146787 0 2.7104093769761874 0 1.5303695511246984 0.3494850021680094 [QP]DPV{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[DP]QPV{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[DP]V[QP]{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[{I|L}P]YYQ[KT]{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[RH]{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}Y[SG][KT]{M(Oxidation (M))|F};[QP]DPV{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{I|L}P];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVR[RH]{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V{NN|[MP]|[D{I|L}]|[EV]};[{I|L}P]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}QQ[{I|L}A] 7.3917;6.6844;5.8658;3.5186;2.833;2.6466;2.2716;1.2995;1.0711;0.54884 -;-;-;-;-;-;-;-;-;- 2244 NaN NaN 828200.9 NaN 18316 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22435 89.781 NaN 307580 35 0 37394 0.261 + 21357 PTKELIDK 8 59 472.27516938293314 NaN 0 472.28790283203125 PEAK HCD FTMS 0 0 0 22432 7078.4541015625 0.33259089661015334 2 -0.045684814453125 3 Unmodified _PTKELIDK_ REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1 4.3292370932331545 0.38822285293237185 1 P 1 -1 2.4743 0 0 0.26251 0 0 537.2941609320789 305.1596773736938 842.4538383057727 0 0 0 0 0 0 0 0 0 P 0.26251 + + 12 + NaN NaN 118403.3 NaN 18317 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22436 89.785 NaN 338250 35 0 68005 0.261 -1 LPDFFLPEAM 10 74 598.2891886967892 1194.5638244603783 2 598.2894287109375 MULTI HCD FTMS 0 0 0 22432 90549.265625 1 0 0 4 Oxidation (M) _LPDFFLPEAM(Oxidation (M))_ ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 17.11289562659939 0.35104376501799556 1 {I|L}[EP]A{M(Oxidation (M))|F} 5 -1 31.95 0 0 2.6747 0 0 619.3007069318375 0 619.3007069318375 0 24.212731494904954 0 0 0 1.274227503252014 0 0 0 {I|L}[EP]A{M(Oxidation (M))|F} 2.6747 + + 116 NaN NaN 130801.6 NaN 18318 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22437 89.788 NaN 173500 35 0 14650 0.263 + 15116 LMKPLLVF 8 62 480.80125649759236 959.5879600619847 2 480.8009033203125 MULTI HCD FTMS 0 0 0 22432 144154.453125 0.13448791564514245 -9 0.22261810302734375 5 Unmodified _LMKPLLVF_ DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000149091|ENST00000456247|DGKZ;ENSG00000157680|ENST00000614521|DGKI;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000157680|O75912|DGKI 2.577480529830294 0.5381683276125971 1 A 1 8 9.2917 0 0 0.96831 0 0 105.07786071145695 780.4593737478649 885.5372344593219 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.96831 - 16 + NaN NaN 104749.9 NaN 18319 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22438 89.791 NaN 158960 35 0 38466 0.261 + 10376 IMIVYFLF 8 44 523.2920781040291 NaN 0 523.2816772460938 PEAK HCD FTMS 0 0 0 22432 27129.49609375 0.7912850702849806 2 -0.045684814453125 6 Unmodified _IMIVYFLF_ CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant;ENSG00000121807|ENST00000445132|CCR2;ENSG00000160791|ENST00000292303|CCR5;nc|ENSG00000121807|P41597|CCR2 17.086550045450526 0.386433553673079 1 P{I|L} 2 7 14.693 0 0 1.4066 0 0 669.3536131398956 162.05593286685783 831.4095460067534 0 0 0 0 0 1 0 0 0 P{I|L} 1.4066 - 35 + NaN NaN 102922.7 NaN 18320 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22439 89.795 NaN 152100 35 0 15983 0.261 + 26368 SSQGWETGQF 10 57 563.742958453935 1125.4713639746699 2 563.7425537109375 MULTI HCD FTMS 0 0 0 22432 31455.7890625 0.48379010838756237 6 -0.147064208984375 7 Unmodified _SSQGWETGQF_ REV__nc|ENSG00000133961|P49757-2|NUMB;REV__nc|ENSG00000133961|P49757-4|NUMB;REV__nc|ENSG00000133961|P49757-5|NUMB;REV__nc|ENSG00000133961|P49757-6|NUMB;REV__nc|ENSG00000133961|P49757-9|NUMB 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2976 0 0 960.3930691522074 0 960.3930691522074 0 -0.34440644703906287 -0.34440644703906287 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2976 + + 7 + NaN NaN 102568.2 NaN 18321 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22440 89.798 NaN 204310 35 0 80312 0.261 + 1819 CRRQVCLEL 9 50 560.2923542878003 1118.5701556424006 2 560.7931518554688 MULTI HCD FTMS 0 0 0 22432 16736.73828125 0.24866870177863554 -8 0.19640350341796875 8 Unmodified _CRRQVCLEL_ REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF 13.90604991867851 0.24021115267848145 1 {I|L}E{I|L} 3 -1 33.5 0 0 2.9949 0 0 745.352342674025 0 745.352342674025 0 28.015384402724592 0 0 0 0.7302046884880937 0 0 0 {I|L}E{I|L} 2.9949 + + 18 NaN NaN 107467.7 NaN 18322 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22441 89.801 NaN 179790 35 0 38125 0.261 + 33542 YIKETIPL 8 50 488.78941644336857 975.5642799535372 2 488.78973388671875 MULTI HCD FTMS 0 0 0 22432 8690.7333984375 0.13357391808457103 -5 0.11093902587890625 9 Unmodified _YIKETIPL_ REV__tr|U7T202|U7T202_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00790PE=3SV=1 4.75600775471527 0.5349361699807423 1 M 1 -1 0.9691 0 0 0.099337 0 0 487.4298938224809 354.07656644194094 841.5064602644218 0 0 0 0 0 0 0 0 0 M 0.099337 - 3 + NaN NaN 103277.2 NaN 18323 4116 22432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22443 89.806 NaN 136270 35 0 22876 0.327 + 22762 QYILAVPVL 9 44 508.31297389239216 1014.6113948515844 2 508.3125915527344 MULTI HCD FTMS 0 0 0 22442 18584.552734375 0.21438866469079138 5 -0.1142578125 1 Unmodified _QYILAVPVL_ ENSG00000164953|ENST00000453321|TMEM67 11.640296217721598 0.25978676193971967 1 V[VP]{I|L} 4 5 18.416 0 0 1.8151 0 0 588.3271351544937 0 588.3271351544937 0 18.037771509356908 0 0 0 0.8494850021680094 0 0 0 + V[VP]{I|L} 1.8151 + + 7 NaN NaN 119553.8 NaN 18324 4117 22442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22444 89.811 NaN 180310 35 0 26386 0.261 -1 DPTFDYEMIF 10 46 647.269302605596 1292.5240522779918 2 647.2691650390625 MULTI HCD FTMS 0 0 0 22442 20133.8515625 0.3192545462777826 2 -0.0456695556640625 2 Oxidation (M) _DPTFDYEM(Oxidation (M))IF_ ENSG00000025039|ENST00000369415|RRAGD;ENSG00000116954|ENST00000373001|RRAGC 3.2813086475875832 0.45793521633868084 1 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6223 0 0 964.3822499005875 0 964.3822499005875 0 19.3753063169585 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.6223 - 4 NaN NaN 123646.3 NaN 18325 4117 22442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22445 89.814 NaN 73646 35 0 5122.4 0.262 + -1 FWLNLCHN 8 47 552.2606183448372 NaN 0 552.2615356445312 PEAK HCD FTMS 0 0 0 22442 8047.2265625 0.27271006362074307 1 -0.01287841796875 3 Carbamidomethyl (C) _FWLNLC(Carbamidomethyl (C))HN_ REV__ENST00000482399.5_1_6:33218253-33218451:-|nuORF 2.577480529830294 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.63398 0 0 132.05570826994932 854.3650805434507 986.4207888134001 0 0 0 0 0 0 0 0 0 {I|L} 0.63398 + + 1 + NaN NaN 100627.4 NaN 18326 4117 22442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22447 89.819 NaN 985550 35 0 128040 0.327 + 14496 LFAVFQTTF 9 68 537.2870183315613 1072.5594837299225 2 537.2869262695312 MULTI HCD FTMS 0 0 0 22446 451197.0625 0.25359670063598416 8 -0.21533966064453125 1 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 147.05914393524117 1.1935124485855994E-05 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 9 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} + + 89.161 2.2185 0.85278 8.3129 8.3129 67.328 0 0 0 0 59.70236600603002 0 0 0 3.1237125054200234 0 1.848136244196333 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 8.3129 + + 775 + NaN NaN 230033.1 NaN 18327 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22448 89.824 NaN 702840 35 0 212510 0.261 + 21226 PQVGYKENF 9 73 541.2701098806115 1080.5256668280228 2 541.2702026367188 MULTI HCD FTMS 0 0 0 22446 330946.5 1 0 0 2 Unmodified _PQVGYKENF_ REV__ENST00000474610.1_1_2:33952107-33952842:-|nuORF 13.90604991867851 0.24021115267848145 1 [QP][TA]{M(Oxidation (M))|F}V 6 -1 35.947 0 0 3.3268 0 0 0 434.16866077600713 434.16866077600713 15.769921747127498 0 0 0 0 1.2302046884880937 1.6989700043360187 0 0 [QP][TA]{M(Oxidation (M))|F}V 3.3268 - 171 NaN NaN 198211.4 NaN 18328 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22449 89.827 NaN 352680 35 0 61859 0.261 + 5243 FFDPSLLHLL 10 54 601.334649165231 1200.6547453972619 2 601.3347778320312 MULTI HCD FTMS 0 0 0 22446 142022.234375 0.08817653741332249 13 -0.33145904541015625 3 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 81.89019881105858 0.0034965057646611547 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}DPS{I|L}{I|L}H{I|L}{I|L} 10 0 + 66.038 0 0 5.5001 5.5001 89.551 0 0 0 55.06852979374483 5.496812376923053 5.496812376923053 16.155342337774286 0 2.6549471895720984 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}{M(Oxidation (M))|F}DPS{I|L}{I|L}H{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DV[TP]{I|L}H{I|L}{I|L} 5.5001;4.1546 +;- + 135 + NaN NaN 138555.1 NaN 18329 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22450 89.831 NaN 1002900 35 0 143520 0.261 + 16808 LYEASDHDY 9 99 556.7303274860833 1111.4461020389665 2 556.7311401367188 MULTI HCD FTMS 0 0 0 22446 483585.1875 0.12290509617472221 -7 0.15662384033203125 4 Unmodified _LYEASDHDY_ REV__ENSG00000142408|ENST00000270458|CACNG8 23.1484247019978 0.1603590852062899 1 Y{I|L}V{M(Oxidation (M))|F}[C(Carbamidomethyl (C))M]E 7 -1 55.909 0 0 5.0303 0 0 0 166.02991663150627 166.02991663150627 28.654338637453307 0 0 0 0 1.4489700043360187 1.0969100130080565 0.3494850021680094 0 Y{I|L}V{M(Oxidation (M))|F}[C(Carbamidomethyl (C))M]E 5.0303 - 676 + NaN NaN 238306.8 NaN 18330 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22451 89.834 NaN 524740 35 0 77339 0.261 + 29443 TYTMILNLL 9 73 549.2992800643545 1096.584007195509 2 549.2992553710938 MULTI HCD FTMS 0 0 0 22446 176019.546875 0.7159356024395542 -3 0.0653076171875 5 Oxidation (M) _TYTM(Oxidation (M))ILNLL_ ENSG00000204351|ENST00000375394|SKIC2 92.4914307365334 0.004460681868130716 1 {[QV]|[N{I|L}]|[RA]|[KV]}[HT]C(Carbamidomethyl (C)){I|L}N{I|L} 8 5 62.573 0 0 5.7062 0 0 0 128.07168411722435 128.07168411722435 47.08342832424712 0 0 0 0 1.3807196863200843 1.6989700043360187 1.4604093769761874 0.3807196863200844 {[QV]|[N{I|L}]|[RA]|[KV]}[HT]C(Carbamidomethyl (C)){I|L}N{I|L} 5.7062 - 229 NaN NaN 161700.7 NaN 18331 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22452 89.837 NaN 272840 35 0 15794 0.261 -1 0 71 622.3475435385006 1242.6805341438012 2 622.34716796875 MULTI HCD FTMS 0 0 0 22446 151128.078125 0.6413168449126946 -4 0.0914154052734375 6 NaN NaN 1 P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}G{[DS]|[MA]|[CV]|TT} 7 -1 14.225 0 0 1.1447 0 0 480.25413710761876 0 480.25413710761876 0 2.3653566840992077 0 0 0 0 0 0 0 P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}G{[DS]|[MA]|[CV]|TT} 1.1447 - 195 NaN NaN 127984 NaN 18332 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22453 89.84 NaN 440900 35 0 54637 0.261 -1 SPMDIFDMF 9 76 567.7280266647355 1133.4415003962708 2 567.728759765625 MULTI HCD FTMS 0 0 0 22446 140561.53125 0.7405442280246555 2 -0.05231475830078125 7 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 32.30548876998284 0.10066689432505688 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.1272 0 0 706.2995541115007 0 706.2995541115007 0 17.998037644757048 0 0 0 0.9247425010840047 0 0 0 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1272 + + 155 NaN NaN 141360.6 NaN 18333 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22454 89.844 NaN 136580 35 0 14358 0.261 + 13545 KYPENFFLL 9 39 585.8135427794182 NaN 0 585.81298828125 PEAK HCD FTMS 0 0 0 22446 105909.8359375 0.5922199282510271 -11 0.26830291748046875 8 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 21.536976647645854 0.17708171045360593 1 {I|L}{M(Oxidation (M))|F} 2 8 20.969 0 0 1.7928 0 0 131.0952530245052 775.3419893854124 906.4372424099176 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7928 - 21 + NaN NaN 112343.7 NaN 18334 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22455 89.847 NaN 198180 35 0 80632 0.261 + 1820 CRRQVCLEL 9 53 560.2923542878003 1118.5701556424006 2 560.2918090820312 MULTI HCD FTMS 0 0 0 22446 27324.345703125 0.3539782312748916 -5 0.11096954345703125 9 Unmodified _CRRQVCLEL_ REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF 13.90604991867851 0.24021115267848145 1 {I|L}E{I|L} 3 -1 33.94 0 0 3.0342 0 0 745.3516712873062 0 745.3516712873062 0 19.960762528683702 0 0 0 0.7742275032520141 0 0 0 {I|L}E{I|L} 3.0342 + + 21 NaN NaN 109210.7 NaN 18335 4118 22446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22457 89.852 NaN 1161900 35 0 47572 0.327 -1 0 115 619.8697049488608 1237.7248569645215 2 619.8693237304688 MULTI HCD FTMS 0 0 0 22456 1206350.875 0.5437094582999576 -12 0.30109405517578125 1 NaN NaN 1 MTVV 4 -1 10.69 0 0 0.86367 0 0 132.2458523852684 672.2326610876274 804.4785134728959 0 0 0 0 0 0 0 0.5283773187068795 0 MTVV 0.86367 - 500 + NaN NaN 259834.3 NaN 18336 4119 22456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22458 89.856 NaN 1332100 35 0 181600 0.261 + 32287 VYTVVDEMFL 10 59 608.3025331799707 1214.5905134267414 2 608.3029174804688 MULTI HCD FTMS 0 0 0 22456 1062253.5 1 0 0 2 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 181.3275282027936 3.980396822113991E-16 1 [YV]TVVDEM{M(Oxidation (M))|F}{I|L} 10 0 + 109.38 0 0 9.0054 9.0054 90.351 0 0 0 4.259687322722812 76.7267595653253 4.259687322722812 4.776296993281406 0 3.2302046884880937 0 2.7971062485323515 0 + + [YV]TVVDEM{M(Oxidation (M))|F}{I|L};[YT]VVVDEM{M(Oxidation (M))|F}{I|L};[YT]VVVDE{M(Oxidation (M))|F}M{I|L};[YV]TVVDE{M(Oxidation (M))|F}M{I|L};[YV]{M(Oxidation (M))|F}EDVVTM{I|L};[YV]{M(Oxidation (M))|F}EDV[MT]V{I|L};{[YD]|[{M(Oxidation (M))|F}M]}E[{M(Oxidation (M))|F}V]VVTM{I|L};[YT][HT]R{M(Oxidation (M))|F}M{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}E[{M(Oxidation (M))|F}V]V[MT]V{I|L};[YT][HT]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}M{I|L} 9.0054;8.6121;7.7457;7.5377;6.9891;5.9047;5.1035;3.493;3.4179;2.6265 +;-;-;-;-;-;-;-;-;- + 818 NaN NaN 295408.5 NaN 18337 4119 22456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22459 89.86 NaN 202050 35 0 27956 0.263 + 10309 ILIKLFCK 8 42 489.31438082903935 976.6142087248787 2 489.31451416015625 MULTI HCD FTMS 0 0 0 22456 65155.23046875 0.11620703741880568 -8 0.18941497802734375 3 Unmodified _ILIKLFCK_ REV__ENST00000497960.5_1_22:45560109-45567681:+|nuORF 0.7936320650641473 0.540814922690045 1 C 1 -1 3.4949 0 0 0.35785 0 0 534.3357897252575 336.2354830377563 870.5712727630139 0 0 0 0 0 0 0 0 0 C 0.35785 + + 3 + NaN NaN 129429.6 NaN 18338 4119 22456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22460 89.863 NaN 114110 35 0 8058.7 0.261 + 26560 SVPLRHKE 8 44 483.27888810010995 964.5432232670199 2 483.2787780761719 MULTI HCD FTMS 0 0 0 22456 50381.78515625 0.2933053563407553 -6 0.14376068115234375 4 Unmodified _SVPLRHKE_ REV__ENSG00000162344|ENST00000294312|FGF19 3.944395688203298 0.5361403129012058 1 E 1 -1 13.979 0 0 1.4493 0 0 817.4920433127215 0 817.4920433127215 0 10.880456295278407 0 0 0 0 0 0 0 E 1.4493 + + 10 + NaN NaN 99024.2 NaN 18339 4119 22456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22461 89.867 NaN 69368 35 0 8615.1 0.261 + 19514 NRMDFEDLGLV 11 37 436.87992861314353 1307.6179564396307 3 437.2149963378906 MULTI HCD FTMS 0 0 0 22456 17987.1015625 0.4082830231523627 6 -0.14984893798828125 5 Unmodified _NRMDFEDLGLV_ ENSG00000168894|ENST00000306368|RNF181;ENST00000461845.1_1_2:85822886-85823939:+|nuORF;RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant 0.5059551277355931 0.4167017191902429 1 K 1 11 3.9794 0 0 0.30432 0 0 871.3906137656057 305.1007479303344 1176.4913616959402 0 0 0 0 0 0 0 0 0 K 0.30432 - 2 + NaN NaN 94148 NaN 18340 4119 22456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22463 89.871 NaN 310740 35 0 15762 0.327 -1 0 82 589.3431010203685 1176.671649107537 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22462 227383.421875 0.04968747965046658 71 -1.8506011962890625 1 NaN NaN 1 NS{I|L}{I|L}QA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 8 -1 19.066 0 0 1.6203 0 0 238.14682108194944 0 238.14682108194944 0 4.373212897245297 0 0 0 0.4247425010840047 0 0.3494850021680094 0 NS{I|L}{I|L}QA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.6203 - 465 + NaN NaN 126759.5 NaN 18341 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22464 89.876 NaN 214170 35 0 11437 0.261 + -1 YRIMLLVIFV 10 75 641.8826808965405 1281.7508088598809 2 641.882568359375 MULTI HCD FTMS 0 0 0 22462 158417.625 0.23519446062865762 -7 0.1632843017578125 2 Oxidation (M) _YRIM(Oxidation (M))LLVIFV_ REV__ENSG00000128011|ENST00000248668|LRFN1 1.6526216038709556 0.46655611578153744 1 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 9 -1 26.877 0 0 2.0969 0 0 131.2310215538028 0 131.2310215538028 0 14.569940744530358 0 0 0 0 0 0.3054621874040891 0 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 2.0969 - 207 + NaN NaN 110489.5 NaN 18342 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22465 89.879 NaN 578910 35 0 92294 0.261 + 3677 ELPEQFFQL 9 80 575.7925509527348 1149.5705489722695 2 575.7928466796875 MULTI HCD FTMS 0 0 0 22462 95927.4609375 0.11665342872706237 19 -0.4474945068359375 3 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 33.4449034751529 0.0954363425218424 1 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 5 4 46.542 0 0 4.0487 0 0 468.22252089668126 0 468.22252089668126 0 17.82628671710107 0 0 0 1.8494850021680094 0 0 0 + Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 4.0487 + + 961 NaN NaN 174563.4 NaN 18343 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22466 89.883 NaN 395640 35 0 48261 0.261 + 21940 QEDSSHRDLCV 11 55 644.7830043818195 1287.551455830439 2 644.7836303710938 MULTI HCD FTMS 0 0 0 22462 93062.625 0.3085716168581836 3 -0.07807159423828125 4 Unmodified _QEDSSHRDLCV_ REV__ENSG00000178295|ENST00000381254|GEN1 10.150570793230772 0.3686401556411756 1 [YG]{I|L}D{I|L}E{I|L}P 8 -1 80.967 0 0 6.2884 0 0 0 384.0682772272094 384.0682772272094 76.36291294060548 0 0 0 0 2.6861818737241734 1.6989700043360187 0.3494850021680094 0 [YG]{I|L}D{I|L}E{I|L}P 6.2884 - 165 + NaN NaN 150512.1 NaN 18344 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22467 89.886 NaN 351950 35 0 147510 0.261 + -1 QCCSPHCCN 9 59 583.1862654394496 1164.357977945699 2 583.1868286132812 MULTI HCD FTMS 0 0 0 22462 57428.03515625 0.226064143540684 -3 0.06519317626953125 5 3 Carbamidomethyl (C) _QC(Carbamidomethyl (C))C(Carbamidomethyl (C))SPHC(Carbamidomethyl (C))CN_ REV__ENSG00000241241|ENST00000440582|KRTAP4-16 1.844237919475145 0.33703635659052655 1 {M(Oxidation (M))|F}K{[{M(Oxidation (M))|F}D]|MM} 4 -1 10.177 0 0 0.87407 0 0 609.0884543851984 0 609.0884543851984 0 6.197887582883936 0 0 0 0 0 0 0 {M(Oxidation (M))|F}K{[{M(Oxidation (M))|F}D]|MM} 0.87407 - 57 + NaN NaN 128741.5 NaN 18345 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22468 89.889 NaN 123600 35 0 8684.8 0.261 -1 IYMDTLNIFM 10 48 638.8012248680798 1275.5878968029594 2 638.8018188476562 MULTI HCD FTMS 0 0 0 22462 38693.84765625 0.5804258304780684 -3 0.06519317626953125 6 Oxidation (M) _IYMDTLNIFM(Oxidation (M))_ ENSG00000165678|ENST00000372134|GHITM 29.84058131909904 0.23356904650364865 1 N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 48.175 0 0 3.7767 0 0 736.348158909398 0 736.348158909398 0 45.411115471072456 0 0 0 1.5 0 0 0.4247425010840047 N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7767 + + 85 NaN NaN 104639.4 NaN 18346 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22469 89.893 NaN 42033 35 0 4534.4 0.263 + 34927 YSLFAALLT 9 32 499.77984619140625 NaN 0 499.77984619140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YSLFAALLT_ REV__ENSG00000132681|ENST00000368081|ATP1A4;REV__ENST00000418334.5_1_1:160144048-160152563:+|nuORF;REV__ENST00000466526.1_1_1:160147295-160152563:+|nuORF;REV__nc|ENSG00000132681|Q13733-2|ATP1A4 3.944395688203298 0.27613285122220627 1 {I|L} 1 -1 6.9897 0 0 0.70069 0 0 250.09468193183756 631.3445528619749 881.4392347938124 0 0 0 0 0 0 0 0 0 {I|L} 0.70069 + + 2 + NaN NaN 91232.1 NaN 18347 4120 22462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22471 89.898 NaN 469330 35 0 93367 0.327 -1 0 81 633.3694581930936 1264.724363452987 2 633.3694458007812 MULTI HCD FTMS 0 0 0 22470 388822.90625 0.2924706180907958 14 -0.33046722412109375 1 NaN NaN 1 VM{I|L}[HV]{[HG]|PP}{[DS]|[MA]|[CV]|TT} 9 -1 18.407 0 0 1.4554 0 0 271.14619643379064 0 271.14619643379064 0 7.877874695140154 0 0 0 1.305462187404089 0 0 0 VM{I|L}[HV]{[HG]|PP}{[DS]|[MA]|[CV]|TT} 1.4554 - 139 NaN NaN 151908.6 NaN 18348 4121 22470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22472 89.902 NaN 348960 35 0 28925 0.264 + 22393 QPRPQRRQR 9 76 407.9063024768881 1220.6970780308643 3 407.9062194824219 MULTI HCD FTMS 0 0 0 22470 127867.53125 0.34993590547826214 -9 0.2089385986328125 2 Unmodified _QPRPQRRQR_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 2.282774691075616 0.33371192131023203 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.0456 0 0 1055.6182949271517 0 1055.6182949271517 0 10.774509799928715 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0456 - 14 + NaN NaN 137040 NaN 18349 4121 22470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22473 89.906 NaN 370130 35 0 65371 0.261 + -1 GQEEMMEQL 9 73 563.7225976852045 1125.430642437209 2 563.7203369140625 MULTI HCD FTMS 0 0 0 22470 176454.640625 0.5586205746901396 -3 0.078460693359375 3 2 Oxidation (M) _GQEEM(Oxidation (M))M(Oxidation (M))EQL_ REV__ENSG00000177679|ENST00000611745|SRRM3;REV__nc|ENSG00000177679|A6NNA2|SRRM3 14.838274106304384 0.23215694253501695 1 HQ 2 -1 5.0886 0 0 0.45215 0 0 276.93834614990266 580.3497408502561 857.2880870001588 0 0 0 0 0 0 0 0 0 HQ 0.45215 - 16 + NaN NaN 154361.8 NaN 18350 4121 22470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22474 89.909 NaN 242980 35 0 42605 0.261 -1 0 51 597.8562607199011 1193.6979685066021 2 597.85693359375 MULTI HCD FTMS 0 0 0 22470 87777.890625 0.04585113608413243 66 -1.7102813720703125 4 NaN NaN 1 M 1 -1 7.4743 0 0 0.62614 0 0 633.3338766894088 426.29960247796174 1059.6334791673705 0 0 0 0 0 0.3494850021680094 0 0 0 M 0.62614 - 13 + NaN NaN 142175.5 NaN 18351 4121 22470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22475 89.912 NaN 654680 35 0 106760 0.261 + 3678 ELPEQFFQL 9 78 575.7925509527348 1149.5705489722695 2 576.2744140625 MULTI HCD FTMS 0 0 0 22470 66004.8671875 0.13162229592056432 20 -0.47367095947265625 5 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 23.789781309258295 0.1548179064208189 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 4 5 40.974 0 0 3.5643 0 0 596.2794738923352 0 596.2794738923352 0 6.237577350063788 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 3.5643 + + 603 NaN NaN 180757.7 NaN 18352 4121 22470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22476 89.916 NaN 480980 35 0 66349 0.261 + 31515 VYGFPVNQLF 10 76 592.311281996702 1182.6080110602038 2 592.3109130859375 MULTI HCD FTMS 0 0 0 22470 167390.6875 0.9477105981482098 -3 0.078460693359375 6 Unmodified _VYGFPVNQLF_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 74.92900055777586 0.011744908545316337 1 [YV]G{M(Oxidation (M))|F}[VP]NQ{I|L}{M(Oxidation (M))|F} 10 0 + 69.13 0 0 5.8455 5.8455 86.975 0 0 0 7.269987279362624 53.46787486224656 7.269987279362624 9.164539485499255 0 2.524227503252014 0 0 0.3252574989159953 + + [YV]G{M(Oxidation (M))|F}[VP]NQ{I|L}{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VP]N[AG]{I|L}{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VP]GGQ{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[YV][VP]NQ{I|L}{M(Oxidation (M))|F};[YV]G{[VA]|[{I|L}G]}{[WT]|[RM]}Q{I|L}{M(Oxidation (M))|F};[YV]G{[DS]|[MA]|[CV]|TT}[RV]Q{I|L}{M(Oxidation (M))|F};[YV][Y{I|L}][HT]Q{I|L}{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]G{[VA]|[{I|L}G]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GP{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KT] 5.8455;5.0706;5.0706;3.7315;3.011;2.9053;2.7575;2.6766;2.5171;2.4028 +;-;-;-;-;-;-;-;-;- + 1360 NaN NaN 150291.5 NaN 18353 4121 22470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22478 89.921 NaN 9857800 35 0 1734400 0.327 + 27622 TAISLFYEL 9 100 528.7842518804308 1055.5539508276615 2 528.7849731445312 MULTI HCD FTMS 0 0 0 22477 5254944 0.03900980465285105 -5 0.1142578125 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 109.35 0 0 10.36 10.36 97.308 0 0 0 16.70432836127297 16.478174818886373 16.478174818886373 21.96562771545821 0 2.6861818737241734 1.3979400086720375 1.9916440611282624 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}{M(Oxidation (M))|F}EY{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[TA]{I|L}S{I|L}E{M(Oxidation (M))|F}Y{I|L};{[TV]|[{I|L}S]}[TA]{I|L}EY{M(Oxidation (M))|F}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S[TA]{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}S[TA]{I|L}{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L} 10.36;8.2787;7.8039;7.3277;6.4287;5.2468;3.2138;3.1546;3.0469;2.9878 +;-;-;-;-;-;-;-;-;- + 2852 NaN NaN 1247135.9 NaN 18354 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22479 89.925 NaN 2955100 35 0 668000 0.234 -1 0 103 611.3564525007829 1220.6983520683657 2 611.3565673828125 MULTI HCD FTMS 0 0 0 22477 2768980 0.8115525590321557 9 -0.23007965087890625 2 NaN NaN 1 N 1 -1 7.8567 0 0 0.64362 0 0 106.063130787562 997.5437288343409 1103.606859621903 0 0 0 0 0 0.3252574989159953 0 0 0 N 0.64362 - 104 + NaN NaN 462696.6 NaN 18355 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22480 89.928 NaN 1071100 35 0 118610 0.263 -1 0 76 472.28797554779226 942.5613981623845 2 472.2878112792969 MULTI HCD FTMS 0 0 0 22477 1513881.625 0.9803155030175875 -2 0.04906463623046875 3 NaN NaN 1 P 1 -1 1.1092 0 0 0.11768 0 0 700.4175363233205 142.06328760318596 842.4808239265064 0 0 0 0 0 0 0 0 0 P 0.11768 - 15 + NaN NaN 262193.9 NaN 18356 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22481 89.931 NaN 4271300 35 0 594210 0.261 -1 0 120 539.7751241686321 1077.5356954040642 2 539.7753295898438 MULTI HCD FTMS 0 0 0 22477 1173684.375 0.035500098453061936 -5 0.1142578125 4 NaN NaN 1 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y{I|L} 8 -1 96.822 0 0 8.9855 0 0 0 166.0112246149047 166.0112246149047 46.388662832205014 0 0 0 0 2.4049471895720984 1.6989700043360187 0.9916440611282625 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y{I|L} 8.9855 - 5851 + NaN NaN 734696.2 NaN 18357 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22482 89.935 NaN 889470 35 0 85074 0.261 + 15117 LMKPLLVF 8 88 480.80125649759236 959.5879600619847 2 480.8010559082031 MULTI HCD FTMS 0 0 0 22477 805091.25 0.7511044006580515 -3 0.0685882568359375 5 Unmodified _LMKPLLVF_ DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000149091|ENST00000456247|DGKZ;ENSG00000157680|ENST00000614521|DGKI;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000157680|O75912|DGKI 2.577480529830294 0.5381683276125971 1 A 1 8 9.2917 0 0 0.96831 0 0 105.07996389651449 780.4604243083672 885.5403882048818 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.96831 - 36 + NaN NaN 222184.3 NaN 18358 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22483 89.938 NaN 208350 35 0 33528 0.261 + 20861 PIGVEGIQVL 10 34 512.8055478564038 1023.5965427796076 2 512.8057861328125 MULTI HCD FTMS 0 0 0 22477 171750.765625 0.8280763800627639 1 -0.0290069580078125 6 Unmodified _PIGVEGIQVL_ ENSG00000174498|ENST00000327987|IGDCC3 20.41453444215458 0.3201613495159799 1 {I|L}QV{I|L} 4 6 51.186 0 0 5.0006 0 0 552.289898529327 0 552.289898529327 0 51.18562527100117 0 0 0 1.5 0 0 0.4247425010840047 + {I|L}QV{I|L} 5.0006 + + 21 NaN NaN 113725 NaN 18359 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22484 89.941 NaN 591360 35 0 62379 0.261 + 11331 IYMDTLNIF 9 77 565.2835490840869 1128.5525452349736 2 565.283935546875 MULTI HCD FTMS 0 0 0 22477 213499.734375 0.6381316151829932 -5 0.1142578125 7 Unmodified _IYMDTLNIF_ ENSG00000165678|ENST00000372134|GHITM 118.89474601620944 0.0014903111061077812 1 [Y{I|L}]MDT{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 101.18 0 0 8.9656 8.9656 95.524 0 0 0 14.659452731211715 94.72743112049912 14.659452731211715 16.70818753952375 0 2.805462187404089 1.3010299956639813 1.055462187404089 0.75 + + [Y{I|L}]MDT{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]MDT{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]MDT{I|L}N{M(Oxidation (M))|F}{I|L};[Y{I|L}]MDT{I|L}GG{M(Oxidation (M))|F}{I|L};[Y{I|L}]MDKAE{I|L}{M(Oxidation (M))|F};[Y{I|L}]MDKAE{M(Oxidation (M))|F}{I|L} 8.9656;7.4851;7.3673;6.175;5.9258;4.3275 +;-;-;-;-;- + 548 NaN NaN 171544.2 NaN 18360 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22485 89.945 NaN 707500 35 0 73963 0.261 + -1 YDCWQMEI 8 89 572.7251770821754 1143.4358012311507 2 572.7252807617188 MULTI HCD FTMS 0 0 0 22477 127634.9453125 0.6255598718988743 -5 0.1142578125 8 Carbamidomethyl (C) _YDC(Carbamidomethyl (C))WQMEI_ REV__ENSG00000196811|ENST00000651502|CHRNG;REV__nc|ENSG00000196811|P07510-2|CHRNG 8.593279151180031 0.5292430274356741 1 YE{I|L} 3 -1 11.299 0 0 0.98814 0 0 720.2347038145336 0 720.2347038145336 0 1.3895309840842174 0 0 0 0.3054621874040891 0 0.3807196863200844 0 YE{I|L} 0.98814 - 223 + NaN NaN 192558.6 NaN 18361 4122 22477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22487 89.95 NaN 1608000 35 0 339710 0.327 + -1 LEFAEEMPL 9 66 547.7577226917114 1093.5008924502226 2 547.7575073242188 MULTI HCD FTMS 0 0 0 22486 809006.5625 0.1281590290947151 -4 0.09759521484375 1 Oxidation (M) _LEFAEEM(Oxidation (M))PL_ REV__CREBBP-ATG10|1|fusion;REV__ENSG00000152348|ENST00000282185|ATG10 11.640296217721598 0.25978676193971967 1 {I|L}E 2 -1 23.271 0 0 2.1281 0 0 0 848.3512838428603 848.3512838428603 7.786596949921218 0 0 0 0 0 0 0.3807196863200844 0 {I|L}E 2.1281 + + 73 + NaN NaN 327027.1 NaN 18362 4123 22486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22488 89.954 NaN 1700500 35 0 229460 0.261 + 14497 LFAVFQTTF 9 91 537.2870183315613 1072.5594837299225 2 537.2975463867188 MULTI HCD FTMS 0 0 0 22486 144413.515625 0.08116806188148254 13 -0.28803253173828125 2 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 74.92900055777586 0.007493270374442853 1 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 9 41.662 0 0 3.8843 0 0 148.10033782789077 0 148.10033782789077 0 -4.471128017558641 -4.471128017558641 0 0 0 0 1.829689690656103 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 3.8843 - 1364 + NaN NaN 344623.4 NaN 18363 4123 22486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22489 89.958 NaN 740530 35 0 61632 0.261 + -1 MSATCRDMY 9 88 567.7211542375346 1133.4277555418691 2 567.72216796875 MULTI HCD FTMS 0 0 0 22486 229394.75 0.49610047237674654 -2 0.0519256591796875 3 Carbamidomethyl (C) _MSATC(Carbamidomethyl (C))RDMY_ REV__ENSG00000160185|ENST00000319294|UBASH3A;REV__ENST00000473381.1_1_21:43855574-43867301:+|nuORF;REV__nc|ENSG00000160185|P57075-2|UBASH3A 13.90604991867851 0.24021115267848145 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 50.177 0 0 4.427 0 0 446.13107693034414 0 446.13107693034414 0 17.632414347745815 0 0 0 1.3807196863200843 0 0.3807196863200844 0 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.427 - 271 + NaN NaN 196014.6 NaN 18364 4123 22486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22490 89.961 NaN 1091200 35 0 192390 0.261 + 7861 FYTFPFQQL 9 75 595.797926759519 1189.5813005858379 2 595.7979736328125 MULTI HCD FTMS 0 0 0 22486 303497.875 0.06986424832621009 -7 0.1760711669921875 4 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 147.05914393524117 1.1935124485855994E-05 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 81.019 0 0 6.8107 6.8107 89.431 0 0 0 4.762036441594191 63.151961136536826 4.762036441594191 9.208187539523749 0 2.4604093769761874 0 1.5629529932484498 0.3494850021680094 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]WWQ{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}Q{[MG]|[TS]}P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8107;6.0366;6.0366;4.9724;3.0566;0.42615;0.21609 +;-;-;-;-;-;- + 493 NaN NaN 268519.8 NaN 18365 4123 22486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22491 89.964 NaN 301350 35 0 87068 0.264 -1 0 52 405.11870980179765 808.2228666703953 2 405.1190490722656 MULTI HCD FTMS 0 0 0 22486 119992.921875 0.11547530423973942 -25 0.6320877075195312 5 NaN NaN 1 [C(Carbamidomethyl (C))M]G 3 -1 5.0617 0 0 0.62627 0 0 0 457.1059897995547 457.1059897995547 3.467874862246565 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]G 0.62627 - 7 NaN NaN 138719.9 NaN 18366 4123 22486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22493 89.969 NaN 2808800 35 0 474660 0.327 -1 KPAECRMDS 9 119 555.2396959410551 1108.46483894891 2 556.730712890625 MULTI HCD FTMS 0 0 0 22492 133279.15625 0.048794023884071724 -3 0.0714263916015625 1 Carbamidomethyl (C),Oxidation (M) _KPAEC(Carbamidomethyl (C))RM(Oxidation (M))DS_ nc|ENSG00000047849|P27816-3|MAP4 15.847184025352803 0.2234401846867398 1 {[QG]|[NA]}[MT]CY{I|L}E 8 -1 26.398 0 0 2.3815 0 0 0 180.07656925580378 180.07656925580378 3.562346264470058 0 0 0 0 0 1.3010299956639813 0.48965182871044377 0.5866968715561641 {[QG]|[NA]}[MT]CY{I|L}E 2.3815 - 3581 NaN NaN 479160.3 NaN 18367 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22494 89.973 NaN 332560 35 0 145800 0.261 + 15321 LPARNKILMLS 11 64 628.3829193449938 NaN 0 628.3829345703125 PEAK HCD FTMS 0 0 0 22492 221277.4375 0.19268408300279957 -3 0.0714263916015625 2 Unmodified _LPARNKILMLS_ ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000498611.5_1_22:50657979-50682900:-|nuORF;nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6 4.5288652416199255 0.32927305702295745 1 C(Carbamidomethyl (C)) 1 11 3.0989 0 0 0.24698 0 0 497.8554860515124 593.8237398736936 1091.679225925206 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.24698 - 11 + NaN NaN 133105.1 NaN 18368 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22495 89.977 NaN 327470 35 0 47702 0.261 + 25704 SIVLQAPRFVM 11 71 630.8606992982278 1259.7068456632555 2 630.8603515625 MULTI HCD FTMS 0 0 0 22492 29818.412109375 0.053089218131948286 -3 0.0714263916015625 3 Unmodified _SIVLQAPRFVM_ ENSG00000130943|ENST00000253255|PKDREJ 2.735195868890462 0.4069250265843076 1 {I|L}YQ 3 9 12.976 0 0 1.0301 0 0 130.18909771579303 722.2943819635374 852.4834796793305 0 0 0 0 0 0 0 0 0.3054621874040891 {I|L}YQ 1.0301 - 21 + NaN NaN 132261.3 NaN 18369 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22496 89.98 NaN 711880 35 0 181730 0.261 -1 LCYCMDCI 8 84 575.7041303223177 1149.3937077114354 2 575.703857421875 MULTI HCD FTMS 0 0 0 22492 116021.796875 0.4806124456791194 -1 0.019500732421875 4 3 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))YC(Carbamidomethyl (C))M(Oxidation (M))DC(Carbamidomethyl (C))I_ ENST00000579991.2_1_17:56166640-56166793:+|nuORF 7.910154910731844 0.5302565402355366 1 WV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 7 -1 31.079 0 0 2.704 0 0 163.93968046709784 0 163.93968046709784 0 12.104618545090538 0 0 0 0.4247425010840047 0 0 0.28872548999643577 WV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 2.704 - 661 + NaN NaN 185589.7 NaN 18370 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22497 89.984 NaN 231270 35 0 39763 0.261 + 5244 FFDPSLLHLL 10 48 601.334649165231 1200.6547453972619 2 601.3349609375 MULTI HCD FTMS 0 0 0 22492 97302.09375 0.06041139788920102 19 -0.45880126953125 5 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 47.748688679222035 0.08597705450879027 1 {I|L}{[TV]|[{I|L}S]}PDY{I|L} 7 7 45.706 0 0 3.8067 0 0 381.23680312324376 0 381.23680312324376 0 34.736607226101555 0 0 0 1.8494850021680094 0 0 0 {I|L}{[TV]|[{I|L}S]}PDY{I|L} 3.8067 - 53 NaN NaN 115023.7 NaN 18371 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22498 89.987 NaN 367750 35 0 45387 0.263 + 2278 DLPLLAEVI 9 74 491.793682280282 981.572811627364 2 491.79217529296875 MULTI HCD FTMS 0 0 0 22492 37613.42578125 0.2011538864561388 -1 0.019500732421875 6 Unmodified _DLPLLAEVI_ ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F} 1 9 13.099 0 0 1.3345 0 0 816.4906258136906 0 816.4906258136906 0 4.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3345 - 56 + NaN NaN 130510.6 NaN 18372 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22499 89.99 NaN 328540 35 0 19634 0.261 -1 0 75 622.3475010661663 621.3402245995662 1 622.3473510742188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 [YN]{I|L}R 4 -1 16.631 0 0 2.6766 0 0 0 72.01995703004812 72.01995703004812 12.449725484634937 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L}R 2.6766 - 38 NaN NaN 153013.4 NaN 18373 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22500 89.994 NaN 482060 35 0 88164 0.263 + 30418 VLPEAIISF 9 53 494.7892773122596 NaN 0 494.7893371582031 PEAK HCD FTMS 0 0 0 22492 112998.7734375 0.24368483162718405 -2 0.0485076904296875 8 Unmodified _VLPEAIISF_ REV__ENSG00000254656|ENST00000649591|RTL1 37.97399986684836 0.08477284381764581 1 S{I|L}{I|L} 3 -1 38.5 0 0 3.8985 0 0 165.07912931738673 506.26156310109025 671.3406924184769 0 0 0 0 0 1.805462187404089 0 0.4247425010840047 0 S{I|L}{I|L} 3.8985 - 15 + NaN NaN 156439.9 NaN 18374 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22501 89.997 NaN 627570 35 0 32859 0.261 + 21074 PMCVSFFFFL 10 106 619.2930859178435 1236.571618902487 2 619.292236328125 MULTI HCD FTMS 0 0 0 22492 55569.75 0.33321034766094554 6 -0.15892791748046875 9 Unmodified _PMCVSFFFFL_ REV__ENST00000479177.1_1_1:22005912-22007379:-|nuORF 15.847184025352803 0.36288280428275715 1 DVVTM{I|L} 6 -1 29.179 0 0 2.3597 0 0 560.2295531927638 0 560.2295531927638 0 23.527654217123757 0 0 0 0.5 0 0.2742275032520141 0 DVVTM{I|L} 2.3597 - 249 NaN NaN 186074.6 NaN 18375 4124 22492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22503 90.002 NaN 1120500 35 0 52452 0.327 -1 0 118 619.8697049488608 1237.7248569645215 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22502 1141729.25 0.5145841105662703 -6 0.14984893798828125 1 NaN NaN 1 D 1 -1 9.6484 0 0 0.77953 0 0 61.05354828613719 1058.5960049370783 1119.6495532232154 0 0 0 0 0 0.3807196863200844 0 0.2742275032520141 0 D 0.77953 - 242 + NaN NaN 276604.7 NaN 18376 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22504 90.006 NaN 581490 35 0 71161 0.261 + 32288 VYTVVDEMFL 10 65 608.3025331799707 1214.5905134267414 2 608.3026733398438 MULTI HCD FTMS 0 0 0 22502 418946.65625 0.3943942347565812 6 -0.1488189697265625 2 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 172.90653553480564 2.2621595264383766E-11 1 [YV]TVVDEM{M(Oxidation (M))|F}{I|L} 10 0 + 121.7 0 0 10.02 10.02 98.101 0 0 0 18.863781092484686 98.02530509825237 18.863781092484686 36.70211177546062 0 2.8494850021680094 1.3979400086720375 2.5858317385287872 0 + + [YV]TVVDEM{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}EDVV[MT]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DVVTM{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QN]|[E{I|L}]|[KN]}REP{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 10.02;6.9979;4.5101;1.5365 +;-;-;- + 616 NaN NaN 157395.7 NaN 18377 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22505 90.01 NaN 1235000 35 0 468720 0.261 -1 0 77 633.359969593033 632.352693126433 1 633.37158203125 MULTI HCD FTMS 0 0 0 22502 975346.25 0.42103783516608634 -2 0.05225372314453125 3 NaN NaN 1 {I|L}S 2 -1 21.454 0 0 3.3927 0 0 0 429.2141512506469 429.2141512506469 2.50723448092479 0 0 0 0 0 0 0.5 0 {I|L}S 3.3927 - 32 + NaN NaN 270400 NaN 18378 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22506 90.013 NaN 524260 35 0 103760 0.263 + 30419 VLPEAIISF 9 45 494.7892773122596 NaN 0 494.78924560546875 PEAK HCD FTMS 0 0 0 22502 336314.75 0.7252716178624538 -1 0.03275299072265625 4 Unmodified _VLPEAIISF_ REV__ENSG00000254656|ENST00000649591|RTL1 37.97399986684836 0.08477284381764581 1 S{I|L}{I|L} 3 -1 39.693 0 0 4.0193 0 0 165.0788972520631 506.2621201478026 671.3410173998657 0 0 0 0 0 1.9247425010840047 0 0.4247425010840047 0 S{I|L}{I|L} 4.0193 - 13 + NaN NaN 159887 NaN 18379 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22507 90.016 NaN 268510 35 0 44918 0.261 + 22647 QWEDLTPLTF 10 44 625.3087220118755 1248.6028910905509 2 625.3084716796875 MULTI HCD FTMS 0 0 0 22502 113524.875 0.6011933190812893 -2 0.05225372314453125 5 Unmodified _QWEDLTPLTF_ ENSG00000071553|ENST00000369762|ATP6AP1 38.61474834105838 0.1574278268413918 1 {I|L}T[{I|L}P]T{M(Oxidation (M))|F} 6 4 45.278 0 0 3.6263 0 0 558.20024306465 0 558.20024306465 0 39.704999916446795 0 0 0 1.5 0 0.4247425010840047 0 + {I|L}T[{I|L}P]T{M(Oxidation (M))|F} 3.6263 + + 17 NaN NaN 119269.1 NaN 18380 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22508 90.02 NaN 579920 35 0 57214 0.262 + 33171 YERDIYIE 8 80 550.7663157476503 1099.5180785621005 2 550.7666015625 MULTI HCD FTMS 0 0 0 22502 896913 0.5048869934869874 -6 0.14984893798828125 6 Unmodified _YERDIYIE_ REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1 8.593279151180031 0.5292430274356741 1 EY 2 -1 10.969 0 0 0.99763 0 0 151.10134991584442 653.2879693299922 804.3893192458365 0 0 0 0 0 0 0 0 0 EY 0.99763 - 145 + NaN NaN 178243.3 NaN 18381 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22509 90.023 NaN 290270 35 0 43799 0.261 + 31178 VVFILKMK 8 65 489.31438082903935 976.6142087248787 2 489.314208984375 MULTI HCD FTMS 0 0 0 22502 321803.375 0.5739495750545903 -2 0.05225372314453125 7 Unmodified _VVFILKMK_ ENSG00000181104|ENST00000319211|F2R 0.7936320650641473 0.540814922690045 1 A 1 8 3.9794 0 0 0.40747 0 0 113.22866292585373 789.3448263927816 902.5734893186353 0 0 0 0 0 0 0 0 0 A 0.40747 - 29 + NaN NaN 128211.1 NaN 18382 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22510 90.026 NaN 130190 35 0 29977 0.261 + 7695 FYLIETLF 8 47 523.2824896223813 1044.5504263115624 2 523.2818603515625 MULTI HCD FTMS 0 0 0 22502 97510.28125 0.7454601901129193 4 -0.11013031005859375 8 Unmodified _FYLIETLF_ REV__ENST00000478414.1_1_7:107543952-107546123:+|nuORF 20.871210003555333 0.44023077629866025 1 EP{I|L}{M(Oxidation (M))|F} 4 -1 32.92 0 0 3.1516 0 0 540.280481098475 0 540.280481098475 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 EP{I|L}{M(Oxidation (M))|F} 3.1516 - 28 + NaN NaN 100928.2 NaN 18383 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22511 90.03 NaN 131010 35 0 9160.7 0.261 + 22600 QTRVNKAP 8 60 457.2642699555902 912.5139869779804 2 457.26458740234375 MULTI HCD FTMS 0 0 0 22502 37480.39453125 0.5378391167829006 -1 0.03275299072265625 9 Unmodified _QTRVNKAP_ ENSG00000183963|ENST00000333137|SMTN;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000493335.5_1_22:31489433-31491914:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN 4.75600775471527 0.5349361699807423 1 {I|L} 1 8 5.4846 0 0 0.60104 0 0 474.2857287766116 322.11936365299067 796.4050924296023 0 0 0 0 0 0 0 0 0 {I|L} 0.60104 - 37 + NaN NaN 103841.2 NaN 18384 4125 22502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22513 90.034 NaN 5537800 35 0 1913300 0.327 + -1 WHNYMTEL 8 94 555.2396959410551 1108.46483894891 2 555.2401123046875 MULTI HCD FTMS 0 0 0 22512 2939484.75 0.21307173034133986 -1 0.0326995849609375 1 Oxidation (M) _WHNYM(Oxidation (M))TEL_ REV__ENST00000526769.3_1_11:6735844-6741409:-|nuORF;REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1 21.74664581756881 0.4337896562907935 1 {I|L}{M(Oxidation (M))|F}Y{[{M(Oxidation (M))|F}D]|MM}YE{I|L} 8 -1 + 38.593 0 0 3.4816 3.4816 82.551 0 0 0 27.79075933598763 5.522122355001649 5.522122355001649 7.085521743960324 0 0.1861818737241735 0 1.4749073637206092 0 {I|L}{M(Oxidation (M))|F}Y{[{M(Oxidation (M))|F}D]|MM}YE{I|L};{I|L}Y{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}YE{I|L};{[QG]|[NA]}[WC(Carbamidomethyl (C))][PG]YE{I|L};{[QG]|[NA]}YY{[CA]|SS}YG[KG];{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))QQ[DG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))E[KC]{[QS]|[NT]}{I|L} 3.4816;2.8424;1.4085;0.97313;0.58036;0.27498 -;-;-;-;-;- 839 + NaN NaN 923017.9 NaN 18385 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22514 90.039 NaN 3548100 35 0 472870 0.262 + 4414 EYFSILGP 8 97 463.23692312127883 924.4592933093577 2 463.2370910644531 MULTI HCD FTMS 0 0 0 22512 187231.296875 0.13032091773535998 -1 0.0326995849609375 2 Unmodified _EYFSILGP_ ENST00000549413.1_1_12:56355068-56359795:-|nuORF 93.88341677533236 0.03025875853923581 1 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 2 + 92.032 0 0 9.9552 9.9552 92.453 0 0 0 45.63940653059227 5.484550065040281 5.484550065040281 8.010299956639813 0 2.305462187404089 1.3010299956639813 1.6861818737241734 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}S{I|L}[PG];YE{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{M(Oxidation (M))|F}{I|L}[KP]E;YE{I|L}{M(Oxidation (M))|F}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}[KP]E;YE{M(Oxidation (M))|F}{I|L}[KP]E;EY{I|L}S{M(Oxidation (M))|F}{I|L}[PG];[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[PG];YE{I|L}{M(Oxidation (M))|F}[KP]E 9.9552;9.0887;9.0321;8.6976;8.1656;7.8311;7.7744;7.4766;7.3675;6.908 -;-;-;-;-;-;-;-;-;- 1773 + NaN NaN 622258.4 NaN 18386 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22515 90.042 NaN 2414700 35 0 310030 0.261 + 31023 VSPAIFYEL 9 113 519.7793694882322 1037.5441860432643 2 519.7794189453125 MULTI HCD FTMS 0 0 0 22512 210314.296875 0.20835423049588875 -1 0.0326995849609375 3 Unmodified _VSPAIFYEL_ REV__ENSG00000174442|ENST00000307897|ZWILCH;REV__nc|ENSG00000174442|Q9H900-2|ZWILCH 81.61307344734483 0.005330412723537057 1 {I|L}EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 9 -1 + 84.097 0 0 8.1054 8.1054 90.415 0 0 0 20.69746422435189 2.498774732165998 2.498774732165998 8.349870154235873 0 2.6989700043360187 0 2.055462187404089 0 {I|L}EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG];E{I|L}Y{M(Oxidation (M))|F}{I|L}S{I|L}[PG];{I|L}EY{M(Oxidation (M))|F}{I|L}TV[PG];EY{I|L}{M(Oxidation (M))|F}{I|L}S{I|L}[PG];YE{I|L}{M(Oxidation (M))|F}{I|L}S{I|L}[PG];E{I|L}Y{M(Oxidation (M))|F}{I|L}TV[PG];[YE]{I|L}{M(Oxidation (M))|F}{I|L}S{I|L}[PG];{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}{I|L}TV[PG];YE{I|L}{M(Oxidation (M))|F}{I|L}TV[PG] 8.1054;7.3006;7.1636;6.8407;6.7505;6.3588;5.9459;5.9405;5.899;5.8087 -;-;-;-;-;-;-;-;-;- 2685 + NaN NaN 442757.2 NaN 18387 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22516 90.046 NaN 503790 35 0 202530 0.261 -1 VCMCACMCV 9 64 583.1862654394496 1164.357977945699 2 583.1860961914062 MULTI HCD FTMS 0 0 0 22512 95655.4609375 0.37654552855569673 3 -0.07743072509765625 4 3 Carbamidomethyl (C),2 Oxidation (M) _VCM(Oxidation (M))C(Carbamidomethyl (C))AC(Carbamidomethyl (C))M(Oxidation (M))C(Carbamidomethyl (C))V_ nc|nan|Q96N68|C18orf15;REV__nc|nan|Q96N68|C18orf15 0.6014990680409731 0.3464572424761564 1 E 1 -1 12.787 0 0 1.0982 0 0 866.2633257013616 166.02939783267814 1032.2927235340399 0 0 0 0 0 0.7302046884880937 0 0 0 E 1.0982 - 16 + NaN NaN 157996.6 NaN 18388 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22517 90.049 NaN 382980 35 0 17182 0.261 -1 0 99 641.8826808965405 1281.7508088598809 2 641.8833618164062 MULTI HCD FTMS 0 0 0 22512 243114.53125 0.3609395801024834 -1 0.0326995849609375 5 NaN NaN 1 {I|L}E{I|L}C 4 -1 11.146 0 0 0.86962 0 0 131.2278182408416 689.2795942060783 820.50741244692 0 0 0 0 0 0 0 0 0 {I|L}E{I|L}C 0.86962 - 184 + NaN NaN 138287.9 NaN 18389 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22518 90.052 NaN 394290 35 0 77369 0.264 + 26237 SPYSLLEVL 9 37 510.7843467790659 1019.5541406249318 2 510.7841491699219 MULTI HCD FTMS 0 0 0 22512 180074.71875 0.5723066664336014 -2 0.06545257568359375 6 Unmodified _SPYSLLEVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 25.399314129420986 0.14091189997036632 1 {I|L}EV{I|L} 4 5 37.467 0 0 3.6748 0 0 547.2628651349625 0 547.2628651349625 0 34.368128451160516 0 0 0 1.305462187404089 0 0 0 + {I|L}EV{I|L} 3.6748 + + 39 NaN NaN 151720.8 NaN 18390 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22519 90.056 NaN 328290 35 0 29069 0.261 + 800 ATLSITCHRS 10 82 544.7789933530202 NaN 0 544.7791137695312 PEAK HCD FTMS 0 0 0 22512 63086.56640625 0.2301008358774776 -3 0.08495330810546875 7 Unmodified _ATLSITCHRS_ KMT2E|p.L1610Ffs*259|1|0.15|ENSG00000005483|chr7:105112579-105112580|-/T|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E 24.990960013464015 0.24020601536510064 1 S{I|L}{M(Oxidation (M))|F} 3 8 36.771 0 0 3.3811 0 0 285.1682301251969 452.16769467275304 737.3359247979499 0 0 0 0 0 1.9247425010840047 0 1.0356668758921828 0 S{I|L}{M(Oxidation (M))|F} 3.3811 - 58 NaN NaN 140142 NaN 18391 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22520 90.059 NaN 370380 35 0 47854 0.261 + 14576 LFLCSLCFIL 10 53 586.3159544724704 NaN 0 586.3161010742188 PEAK HCD FTMS 0 0 0 22512 92556.5234375 0.6581533229611568 -1 0.0326995849609375 8 Unmodified _LFLCSLCFIL_ REV__ENST00000261332.10_1_18:32920541-32920667:-|nuORF 10.823927491677226 0.33092050725491123 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 11.682 0 0 0.99797 0 0 132.10498634579727 628.3087252252561 760.4137115710535 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.99797 - 70 + NaN NaN 145936.2 NaN 18392 4126 22512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22522 90.064 NaN 51344000 35 0 9659800 0.326 + 27623 TAISLFYEL 9 80 528.7842518804308 1055.5539508276615 2 528.7848510742188 MULTI HCD FTMS 0 0 0 22521 134708288 1 0 0 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 110.6 0 0 10.478 10.478 97.923 0 0 0 15.639406530592268 15.639406530592268 15.639406530592268 28.465240951829784 0 2.6861818737241734 1.5228787452803376 1.9916440611282624 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}{M(Oxidation (M))|F}EY{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}E{M(Oxidation (M))|F}Y{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]E{I|L}{I|L};[TA]{I|L}YYA{I|L}E{I|L};[TA]{I|L}S{I|L}[HQ]{[WT]|[RM]};[TA]{I|L}YYAE{I|L}{I|L} 10.478;7.7813;7.3787;6.987;6.781;6.321;5.9688;5.0885;4.6819;4.0703 +;-;-;-;-;-;-;-;-;- + 1315 NaN NaN 979226.2 NaN 18393 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22523 90.068 NaN 1741600 35 0 352530 0.261 -1 0 103 611.3564525007829 1220.6983520683657 2 611.3562622070312 MULTI HCD FTMS 0 0 0 22521 2546424 0.7463242470443623 14 -0.307464599609375 2 NaN NaN 1 N 1 -1 8.8958 0 0 0.72875 0 0 824.4618727519257 279.14731845297496 1103.6091912049008 0 0 0 0 0 0.7302046884880938 0 0 0 N 0.72875 - 159 NaN NaN 351375.7 NaN 18394 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22524 90.072 NaN 2595400 35 0 1043500 0.261 + 23370 RKQTFIINFV 10 85 633.3708489248908 NaN 0 633.3607788085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RKQTFIINFV_ REV__ENSG00000130294|ENST00000498729|KIF1A;REV__nc|ENSG00000130294|Q12756-2|KIF1A;REV__nc|ENSG00000130294|Q12756|KIF1A 9.38312468134398 0.33215363477037435 1 {I|L}ATV 4 -1 24.385 0 0 1.9281 0 0 650.3845957515468 227.0831698053344 877.4677655568812 0 0 0 0 0 0 0 1.110924374808178 0 {I|L}ATV 1.9281 - 187 + NaN NaN 483892.8 NaN 18395 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22525 90.075 NaN 619630 35 0 67556 0.261 + 7755 FYNDHIYQI 9 81 606.7885799327526 1211.562606932305 2 606.7886962890625 MULTI HCD FTMS 0 0 0 22521 709381.0625 1 0 0 4 Unmodified _FYNDHIYQI_ REV__ENSG00000177000|ENST00000376590|MTHFR;REV__nc|ENSG00000177000|P42898-2|MTHFR 38.61474834105838 0.07170385841135779 1 {M(Oxidation (M))|F}YT{M(Oxidation (M))|F}{[YC]|[HE]}QQ{I|L} 9 -1 + 72.359 0 0 5.9724 5.9724 86.405 0 0 0 32.74522961904381 6.701877825604967 6.701877825604967 7.652974802632656 0 2.4489700043360187 1.2218487496163564 0.4247425010840047 1.341129063296272 {M(Oxidation (M))|F}YT{M(Oxidation (M))|F}{[YC]|[HE]}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}{[YC]|[HE]}QQ{I|L};{M(Oxidation (M))|F}YT{M(Oxidation (M))|F}{[YC]|[HE]}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}{[YC]|[HE]}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}{[YC]|[HE]}Q[AG]{I|L};{[QN]|[E{I|L}]|[KN]}WQP{M(Oxidation (M))|F}TYE;[Y{M(Oxidation (M))|F}]T[QP][HK]YE 5.9724;5.3407;5.2124;4.5807;4.5807;3.8505;3.0062 -;-;-;-;-;-;- 1088 + NaN NaN 180065 NaN 18396 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22526 90.078 NaN 167340 35 0 19034 0.263 + 25719 SKHGFMTF 8 49 477.7286590876442 953.4427652420884 2 477.72857666015625 MULTI HCD FTMS 0 0 0 22521 128037.125 0.6561971428786498 -1 0.029327392578125 5 Unmodified _SKHGFMTF_ ENST00000506714.5_1_4:89300148-89319290:+|nuORF;nc|ENSG00000138642|Q8IVU3-3|HERC6 2.577480529830294 0.5381683276125971 1 {I|L}{I|L} 2 8 10.969 0 0 1.1505 0 0 59.04810781385124 665.2126558893186 724.2607637031699 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1505 - 14 + NaN NaN 113448.6 NaN 18397 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22527 90.082 NaN 260230 35 0 13874 0.261 + 14443 LERRHKEPL 9 79 589.3430812954706 1176.671609657741 2 589.3436889648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LERRHKEPL_ REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F}AC(Carbamidomethyl (C)){M(Oxidation (M))|F}A 5 -1 21.454 0 0 1.8232 0 0 166.1867745914828 411.2229403131469 577.4097149046297 0 0 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}AC(Carbamidomethyl (C)){M(Oxidation (M))|F}A 1.8232 - 539 + NaN NaN 124724.8 NaN 18398 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22528 90.085 NaN 116070 35 0 16224 0.263 + -1 QLIMKAVF 8 47 483.27888810010995 964.5432232670199 2 483.2787170410156 MULTI HCD FTMS 0 0 0 22521 160127.859375 0.9322091051043359 2 -0.04810333251953125 7 Oxidation (M) _QLIM(Oxidation (M))KAVF_ REV__ENST00000382464.6_1_14:31869498-31869600:-|nuORF 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.358 0 0 799.461891945534 0 799.461891945534 0 -1.593793813122062 -1.593793813122062 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.358 + + 32 + NaN NaN 100741 NaN 18399 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22529 90.088 NaN 139210 35 0 8838.5 0.261 + 31199 VVLGRCAR 8 55 437.2571776492426 NaN 0 437.2573547363281 PEAK HCD FTMS 0 0 0 22521 365774.875 1 0 0 8 Unmodified _VVLGRCAR_ REV__ENSG00000177646|ENST00000308982|ACAD9 2.302733041254933 0.38822285293237185 1 K 1 -1 3.9794 0 0 0.45609 0 0 436.27075070688517 305.1005953424438 741.371346049329 0 0 0 0 0 0 0 0 0 K 0.45609 - 1 + NaN NaN 94679.9 NaN 18400 4127 22521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22531 90.093 NaN 22262000 35 0 3239400 0.327 -1 0 103 539.7751241686321 1077.5356954040642 2 539.775390625 MULTI HCD FTMS 0 0 0 22530 21990910 0.6651528185100225 1 -0.0187835693359375 1 NaN NaN 1 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 92.141 0 0 8.5511 0 0 0 279.095944269084 279.095944269084 54.19547293177743 0 0 0 0 2.4361818737241734 1.6989700043360187 0.7302046884880937 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.5511 - 5555 + NaN NaN 574562.7 NaN 18401 4128 22530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22532 90.097 NaN 3699700 35 0 783090 0.256 -1 0 93 547.7577226917114 1093.5008924502226 2 547.7576904296875 MULTI HCD FTMS 0 0 0 22530 4592681 0.7275510053748732 1 -0.0187835693359375 2 NaN NaN 1 {I|L}EM 3 -1 27.619 0 0 2.5258 0 0 0 717.3004244440061 717.3004244440061 13.446144150699569 0 0 0 0 0 0 0.3807196863200844 0 {I|L}EM 2.5258 - 514 + NaN NaN 636040.4 NaN 18402 4128 22530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22533 90.101 NaN 2595800 35 0 382950 0.235 + 11834 KEPTPFIIE 9 101 537.2975409550762 1072.5805289769523 2 537.297607421875 MULTI HCD FTMS 0 0 0 22530 3554243.75 0.6281704059595392 1 -0.0187835693359375 3 Unmodified _KEPTPFIIE_ ENSG00000115998|ENST00000264434|C2orf42 14.838274106304384 0.23215694253501695 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE 8 7 62.841 0 0 5.8589 0 0 0 145.09804043723173 145.09804043723173 16.20506544868192 0 0 0 0 0 1.2218487496163564 1.947621246364342 0 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE 5.8589 - 2883 NaN NaN 410701 NaN 18403 4128 22530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22534 90.104 NaN 605730 35 0 70922 0.261 -1 0 83 472.28797554779226 942.5613981623845 2 472.28802490234375 MULTI HCD FTMS 0 0 0 22530 671763.4375 0.4350010603647007 4 -0.0700836181640625 4 NaN NaN 1 PP 2 -1 10.322 0 0 1.0951 0 0 440.26155033367 305.1600435846313 745.4215939183014 0 0 0 0 0 0.7134679910804405 0 0 0 PP 1.0951 - 14 + NaN NaN 181671.6 NaN 18404 4128 22530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22535 90.107 NaN 403250 35 0 30940 0.261 + 15118 LMKPLLVF 8 78 480.80125649759236 959.5879600619847 2 480.8013916015625 MULTI HCD FTMS 0 0 0 22530 723651.5625 0.6751257986431041 3 -0.05747222900390625 5 Unmodified _LMKPLLVF_ DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000149091|ENST00000456247|DGKZ;ENSG00000157680|ENST00000614521|DGKI;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000157680|O75912|DGKI 2.577480529830294 0.5381683276125971 1 K 1 7 10.529 0 0 1.0972 0 0 396.235922563741 432.22422205142817 828.4601446151692 0 0 0 0 0 0.4247425010840047 0 0 0.3807196863200844 + K 1.0972 + + 35 + NaN NaN 143420.8 NaN 18405 4128 22530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22537 90.112 NaN 5137800 35 0 1249200 0.327 + 7862 FYTFPFQQL 9 97 595.797926759519 1189.5813005858379 2 595.7978515625 MULTI HCD FTMS 0 0 0 22536 2882290.5 0.663494132340387 -1 0.0187835693359375 1 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 174.72732175369546 1.2540765405420886E-09 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 97.63 0 0 8.2071 8.2071 91.798 0 0 0 4.628618393527404 63.1857177957124 4.628618393527404 9.208187539523749 0 2.6307196863200843 0 2.4489700043360187 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L} 8.2071;7.433;7.433;7.0908;7.0313;6.6626;6.3168;6.3168;6.2572;6.2572 +;-;-;-;-;-;-;-;-;- + 8173 NaN NaN 611271.4 NaN 18406 4129 22536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22538 90.116 NaN 406910 35 0 161570 0.261 + 20843 PIADRMKIAIK 11 86 628.3829193449938 NaN 0 628.3827514648438 PEAK HCD FTMS 0 0 0 22536 193970.65625 0.168905869713818 2 -0.03868865966796875 2 Unmodified _PIADRMKIAIK_ REV__ENSG00000102890|ENST00000393997|ELMO3;REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3 4.5288652416199255 0.32927305702295745 1 W 1 -1 4.6041 0 0 0.36693 0 0 278.31611490004474 787.3140599019976 1065.6301748020423 0 0 0 0 0 0 0 0 0 W 0.36693 - 15 + NaN NaN 147540.4 NaN 18407 4129 22536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22539 90.12 NaN 456600 35 0 60345 0.261 + 31773 VYLQEFELL 9 68 577.3107305791294 1152.6069082250588 2 577.3104858398438 MULTI HCD FTMS 0 0 0 22536 168189.890625 0.7870045922571371 -1 0.0187835693359375 3 Unmodified _VYLQEFELL_ ENSG00000136051|ENST00000332180|WASHC4 47.594388314883695 0.03493607795751234 1 QE{M(Oxidation (M))|F}E{I|L}{I|L} 6 3 61.675 0 0 5.3509 0 0 375.21556288886876 0 375.21556288886876 0 48.91104993883733 0 0 0 2.1237125054200234 0 0 0.3807196863200844 + QE{M(Oxidation (M))|F}E{I|L}{I|L} 5.3509 + + 227 NaN NaN 154847.8 NaN 18408 4129 22536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22540 90.123 NaN 395410 35 0 54790 0.264 -1 0 66 405.11870980179765 808.2228666703953 2 405.11895751953125 MULTI HCD FTMS 0 0 0 22536 78777.9921875 0.07581207685503223 -19 0.4789886474609375 4 NaN NaN 1 {I|L} 1 -1 11.594 0 0 1.4345 0 0 677.1281686496907 0 677.1281686496907 0 0 0 0 0 0 0 0 0 {I|L} 1.4345 - 33 + NaN NaN 159256.3 NaN 18409 4129 22536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22542 90.128 NaN 1366300 35 0 52756 0.327 -1 0 125 619.8697049488608 1237.7248569645215 2 619.86962890625 MULTI HCD FTMS 0 0 0 22541 1853934.625 0.8355792759567444 -1 0.01604461669921875 1 NaN NaN 1 NA[RV]QD 6 -1 20.152 0 0 1.6281 0 0 79.06466612749644 472.2756746881469 551.3403408156433 0 0 0 0 0 1.0994850021680094 0 0.841129063296272 0.4247425010840047 NA[RV]QD 1.6281 - 658 + NaN NaN 295533.3 NaN 18410 4130 22541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22543 90.132 NaN 395230 35 0 77588 0.263 + 30420 VLPEAIISF 9 47 494.7892773122596 NaN 0 494.789306640625 PEAK HCD FTMS 0 0 0 22541 432180.78125 0.9320092396371159 4 -0.0674896240234375 2 Unmodified _VLPEAIISF_ REV__ENSG00000254656|ENST00000649591|RTL1 37.97399986684836 0.08477284381764581 1 S{I|L}{I|L} 3 -1 38.94 0 0 3.9431 0 0 165.0790466608998 506.26143555541086 671.3404822163106 0 0 0 0 0 1.8494850021680094 0 0.4247425010840047 0 S{I|L}{I|L} 3.9431 - 18 + NaN NaN 141106.2 NaN 18411 4130 22541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22544 90.136 NaN 571840 35 0 51006 0.261 -1 SPMDIFDMF 9 85 567.7279453263786 1133.4413377195572 2 567.7289428710938 MULTI HCD FTMS 0 0 0 22541 197016.15625 0.8722949520899741 1 -0.02264404296875 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 51.186 0 0 4.5159 0 0 559.2315927518863 0 559.2315927518863 0 34.73197507588033 0 0 0 1.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5159 + + 442 + NaN NaN 176087 NaN 18412 4130 22541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22545 90.139 NaN 237320 35 0 18498 0.264 + 22394 QPRPQRRQR 9 67 407.9063024768881 1220.6970780308643 3 407.90606689453125 MULTI HCD FTMS 0 0 0 22541 365402.71875 1 0 0 4 Unmodified _QPRPQRRQR_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 0.9622753412299311 0.3437222896773173 1 N 1 -1 0.27759 0 0 0.02274 0 0 718.3982937064487 385.2442545798213 1103.64254828627 0 0 0 0 0 0 0 0 0 N 0.02274 - 10 + NaN NaN 125287 NaN 18413 4130 22541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22546 90.142 NaN 393330 35 0 58526 0.261 -1 YPEAVAVMLF 10 79 578.2914266037084 1154.5683002742167 2 579.2865600585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _YPEAVAVM(Oxidation (M))LF_ tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1 11.640296217721598 0.4022326134240651 1 NHP{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}{M(Oxidation (M))|F} 8 -1 31.617 0 0 2.7385 0 0 163.0696563306604 0 163.0696563306604 0 19.922750325201406 0 0 0 0 0 0.6747425010840047 0 NHP{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}{M(Oxidation (M))|F} 2.7385 - 138 + NaN NaN 151321.5 NaN 18414 4130 22541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22547 90.146 NaN 494550 35 0 69991 0.261 -1 0 76 622.3475010661663 621.3402245995662 1 622.3480224609375 MULTI HCD FTMS 0 0 0 22541 267660 0.6355936825618764 2 -0.03525543212890625 6 NaN NaN 1 [YN]{I|L} 3 -1 12.051 0 0 1.9396 0 0 0 228.12714247101096 228.12714247101096 9.28715887543991 0 0 0 0 0 1.0969100130080565 0 0 [YN]{I|L} 1.9396 - 31 NaN NaN 163900 NaN 18415 4130 22541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22549 90.15 NaN 538980 35 0 93751 0.327 + 32218 VYTLDIPVL 9 61 516.802782932409 1031.5910129316178 2 516.8025512695312 MULTI HCD FTMS 0 0 0 22548 363377.3125 0.7386143243897498 1 -0.01261138916015625 1 Unmodified _VYTLDIPVL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 104.79918948944588 0.003791450360204016 1 [YV]T{I|L}D{I|L}PV{I|L} 9 0 + 85.862 0 0 8.3232 8.3232 97.084 0 0 0 15.475373959437846 66.82048784621223 15.475373959437846 58.30320662047981 0 2.079689690656103 1.2218487496163564 1.5044321917401078 0 + + [YV]T{I|L}D{I|L}PV{I|L};[VP][YV]D{I|L}[{I|L}T]{I|L};[YV][VP]D{I|L}[{I|L}T]{I|L} 8.3232;2.6714;2.1155 +;-;- + 211 NaN NaN 166541 NaN 18416 4131 22548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22550 90.155 NaN 668400 35 0 53057 0.261 + 23937 RTRRWRRSS 9 88 630.8606992982278 1259.7068456632555 2 630.8607788085938 MULTI HCD FTMS 0 0 0 22548 512424.34375 0.9123291898199742 4 -0.0774688720703125 2 Unmodified _RTRRWRRSS_ REV__nc|ENSG00000180767|Q8NET6-2|CHST13 6.723162845929126 0.3000504726104499 1 YQ 2 -1 8.5835 0 0 0.68139 0 0 243.26868755954303 722.2964571588499 965.565144718393 0 0 0 0 0 0 0 0 0 YQ 0.68139 - 70 + NaN NaN 183773.4 NaN 18417 4131 22548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22551 90.158 NaN 137490 35 0 26062 0.261 + 5245 FFDPSLLHLL 10 51 601.334649165231 1200.6547453972619 2 601.3351440429688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 25.399314129420986 0.2735354021946395 1 ND[{M(Oxidation (M))|F}E] 4 9 21.22 0 0 1.7674 0 0 677.4427357404312 0 677.4427357404312 0 9.230122350292511 0 0 0 0.9247425010840047 0 0 0 ND[{M(Oxidation (M))|F}E] 1.7674 - 15 NaN NaN 96392.4 NaN 18418 4131 22548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22553 90.163 NaN 2873900 35 0 1063100 0.327 + -1 YWPCANGEL 9 49 555.2396959410551 1108.46483894891 2 555.2401123046875 MULTI HCD FTMS 0 0 0 22552 1276703.75 0.09254325171980476 5 -0.1134796142578125 1 Carbamidomethyl (C) _YWPC(Carbamidomethyl (C))ANGEL_ REV__ENST00000356508.9_1_19:40854624-40872336:+|nuORF;REV__ENST00000392032.6_1_19:40854624-40871671:+|nuORF;REV__ENST00000598962.5_1_19:40854624-40871497:+|nuORF 3.944395688203298 0.32111559684428237 1 YE{I|L} 3 -1 28.188 0 0 2.5429 0 0 685.2599964826187 0 685.2599964826187 0 21.10924374808178 0 0 0 0.5 0 0 0 YE{I|L} 2.5429 - 17 NaN NaN 230562.4 NaN 18419 4132 22552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22554 90.168 NaN 613920 35 0 54798 0.261 + 33166 YEQKQYEL 8 68 550.7663157476503 1099.5180785621005 2 550.7667236328125 MULTI HCD FTMS 0 0 0 22552 170423.765625 0.09593432433818803 1 -0.0128021240234375 2 Unmodified _YEQKQYEL_ REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF 16.942295170755138 0.46913822049235215 1 YE{I|L} 3 -1 11.884 0 0 1.0808 0 0 676.3183848138568 0 676.3183848138568 0 0.9149016145717166 0 0 0 0.09418767740052486 0 0.5 0 YE{I|L} 1.0808 + + 117 + NaN NaN 167294.5 NaN 18420 4132 22552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22555 90.171 NaN 2470500 35 0 318350 0.262 + 4415 EYFSILGP 8 90 463.23692312127883 924.4592933093577 2 463.2373046875 MULTI HCD FTMS 0 0 0 22552 58525.48828125 0.04073622023146367 5 -0.1134796142578125 3 Unmodified _EYFSILGP_ ENST00000549413.1_1_12:56355068-56359795:-|nuORF 93.88341677533236 0.03025875853923581 1 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 2 + 91.407 0 0 9.8876 9.8876 92.228 0 0 0 49.6844944727338 5.484550065040281 5.484550065040281 7.697953115119063 0 2.305462187404089 1.3010299956639813 1.6237125054200234 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}S{I|L}[PG];YE{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{M(Oxidation (M))|F}{I|L}[KP]E;YE{I|L}{M(Oxidation (M))|F}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}[KP]E;YE{M(Oxidation (M))|F}{I|L}[KP]E;{M(Oxidation (M))|F}YE{I|L}S{I|L}[PG];[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[PG];YE{I|L}{M(Oxidation (M))|F}[KP]E 9.8876;9.0549;8.9983;8.7011;8.1656;7.8684;7.8117;7.413;7.3874;6.979 -;-;-;-;-;-;-;-;-;- 1092 + NaN NaN 460183.2 NaN 18421 4132 22552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22557 90.176 NaN 1872300 35 0 614290 0.327 + 14888 LKQAEIWLHK 10 98 633.3700071326913 1264.7254613321825 2 633.87109375 MULTI HCD FTMS 0 0 0 22556 326961.75 0.6098221528657476 6 -0.14293670654296875 1 Unmodified _LKQAEIWLHK_ ENSG00000123297|ENST00000652027|TSFM;nc|ENSG00000123297|P43897-2|TSFM;nc|ENSG00000123297|P43897-3|TSFM;nc|ENSG00000123297|P43897-4|TSFM;TSFM-OS9|1|fusion;TSFM-OS9|2|fusion;TSFM-OS9|3|fusion;TSFM-OS9|4|fusion;TSFM-OS9|5|fusion;TSFM-OS9|6|fusion;TSFM-OS9|7|fusion;TSFM-OS9|8|fusion 12.240655878213236 0.39661705172222156 1 TA{I|L}VH{[HG]|PP}{[DS]|[MA]|[CV]|TT} 9 9 23.271 0 0 1.84 0 0 329.16901673099017 0 329.16901673099017 0 12.786889243983012 0 0 0 1.0317183090963749 0 1.1861818737241734 0 TA{I|L}VH{[HG]|PP}{[DS]|[MA]|[CV]|TT} 1.84 - 934 NaN NaN 357780 NaN 18422 4133 22556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22558 90.18 NaN 208350 35 0 7321.9 0.261 + 16306 LQVGLQLRNKN 11 84 641.8826808965405 1281.7508088598809 2 641.8826904296875 MULTI HCD FTMS 0 0 0 22556 294215.59375 0.4368066866333307 6 -0.14293670654296875 2 Unmodified _LQVGLQLRNKN_ REV__ENSG00000171502|ENST00000370571|COL24A1;REV__nc|ENSG00000171502|Q17RW2-2|COL24A1 2.9952420565917617 0.40578455234410343 1 C 1 -1 6.9897 0 0 0.54532 0 0 486.4412518303871 689.2788790338499 1175.720130864237 0 0 0 0 0 0 0 0 0 C 0.54532 - 82 + NaN NaN 113152 NaN 18423 4133 22556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22559 90.184 NaN 153810 35 0 22649 0.261 + 5246 FFDPSLLHLL 10 51 601.334649165231 1200.6547453972619 2 601.3335571289062 MULTI HCD FTMS 0 0 0 22556 97758.71875 0.06069490005753084 27 -0.6970748901367188 3 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 43.85829265575387 0.11192494793849486 1 ED 2 9 20.217 0 0 1.6838 0 0 165.1200549918131 788.4673926947435 953.5874476865565 0 0 0 0 0 0.9247425010840047 0 0 0 ED 1.6838 - 21 + NaN NaN 102425.3 NaN 18424 4133 22556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22560 90.187 NaN 118600 35 0 12198 0.261 + -1 YFQEHCFKN 9 48 636.7748609943802 1271.5351690555603 2 636.7749633789062 MULTI HCD FTMS 0 0 0 22556 54589.69140625 0.7044396405195417 -4 0.0641021728515625 4 Carbamidomethyl (C) _YFQEHC(Carbamidomethyl (C))FKN_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant 14.838274106304384 0.23215694253501695 1 Q[YE] 3 -1 22.958 0 0 1.8055 0 0 833.3469105451187 0 833.3469105451187 0 20.48332479720628 0 0 0 0.8252574989159953 0 0 0.4247425010840047 Q[YE] 1.8055 - 11 NaN NaN 111629.6 NaN 18425 4133 22556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22561 90.191 NaN 94810 35 0 11923 0.264 + -1 FMEMKRQEEP 10 49 452.870263060343 NaN 0 452.8701477050781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _FM(Oxidation (M))EM(Oxidation (M))KRQEEP_ REV__ENST00000582659.5_1_17:19140722-19177409:+|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116546.4 NaN 18426 4133 22556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22563 90.195 NaN 20567000 35 0 3835900 0.327 + 27624 TAISLFYEL 9 73 528.7842518804308 1055.5539508276615 2 528.7852783203125 MULTI HCD FTMS 0 0 0 22562 17476524 0.1297360708793211 7 -0.1758270263671875 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 107.59 0 0 10.193 10.193 98.2 0 0 0 15.639406530592268 15.639406530592268 15.639406530592268 36.01342204748164 0 2.6861818737241734 1.2218487496163564 1.9916440611282624 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}[YE]{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]E{I|L}{I|L};[TA]{I|L}Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L};[YE]{I|L}{M(Oxidation (M))|F}S[TA]{I|L}{I|L};[TA]{I|L}Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L} 10.193;6.781;6.6939;6.4625;6.0438;5.4443;4.6391;3.8317;3.6208;3.5582 +;-;-;-;-;-;-;-;-;- + 738 NaN NaN 546390.9 NaN 18427 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22564 90.2 NaN 1750200 35 0 197080 0.261 -1 0 104 611.3564525007829 1220.6983520683657 2 611.3563232421875 MULTI HCD FTMS 0 0 0 22562 2461020.5 0.7212935754702438 21 -0.55328369140625 2 NaN NaN 1 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}[{M(Oxidation (M))|F}V] 7 -1 10.633 0 0 0.87107 0 0 374.19361774785756 0 374.19361774785756 0 1.653784924793129 0 0 0 1.086696871556164 0 0.7302046884880937 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}[{M(Oxidation (M))|F}V] 0.87107 - 204 NaN NaN 351399.3 NaN 18428 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22565 90.203 NaN 644530 35 0 47654 0.261 + 10727 IQQALFFNF 9 83 564.2979202386364 1126.5812875440727 2 564.2982788085938 MULTI HCD FTMS 0 0 0 22562 81176.359375 0.38400778350755876 3 -0.08124542236328125 3 Unmodified _IQQALFFNF_ ENSG00000104635|ENST00000381237|SLC39A14;nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14 41.8396318013385 0.056899836730939755 1 [Q{I|L}]AQ{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9 2 [Q{I|L}]AQ + + 40.086 16.995 3.8604 3.5582 3.5582 59.645 0 0 0 0 20.63560569654762 0 0 0 1.2059771852360797 0 0.6203715150305281 0.2614393726401688 [Q{I|L}]AQ{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3.5582 - 651 + NaN NaN 184550.3 NaN 18429 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22566 90.207 NaN 951160 35 0 148560 0.261 + 20235 NYLPFIMEL 9 80 578.2914266037084 1154.5683002742167 2 578.2920532226562 MULTI HCD FTMS 0 0 0 22562 256307.328125 0.16110664980427564 -6 0.10231781005859375 4 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 139.13845188893973 5.0762478717762276E-05 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 99.363 0 0 8.6061 8.6061 96.237 0 0 0 18.733265875949456 16.478174818886373 16.478174818886373 28.605384569831003 0 2.5669015600442577 1.154901959985743 0 1.2302046884880937 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}E{I|L};{I|L}[YN]P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{I|L}[YN]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}N[RH]P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{M(Oxidation (M))|F}E{I|L} 8.6061;6.1285;5.0935;5.0619;4.2865;4.2384;4.1374;3.768;3.638;3.4028 +;-;-;-;-;-;-;-;-;- + 1791 NaN NaN 228854.9 NaN 18430 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22567 90.21 NaN 299350 35 0 24686 0.261 + 13546 KYPENFFLL 9 61 585.8135427794182 NaN 0 585.81396484375 PEAK HCD FTMS 0 0 0 22562 122072.9375 0.6825997382368205 4 -0.09409332275390625 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.1538978316896649 1 QY{M(Oxidation (M))|F}Q{I|L}D 6 6 23.638 0 0 2.021 0 0 131.10169050272754 241.1558016412719 372.25749214399946 0 0 0 0 0 0.4247425010840047 0 0 0.3807196863200844 QY{M(Oxidation (M))|F}Q{I|L}D 2.021 - 172 + NaN NaN 132417.2 NaN 18431 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22568 90.213 NaN 86780 35 0 18021 0.262 + 12216 KKVFVLIM 8 30 489.31438082903935 976.6142087248787 2 489.31439208984375 MULTI HCD FTMS 0 0 0 22562 41595.109375 0.07418659095831563 7 -0.1758270263671875 6 Unmodified _KKVFVLIM_ REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91558.1 NaN 18432 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22569 90.217 NaN 128060 35 0 9138.3 0.261 + 7208 FSPAEAEGPAL 11 54 544.7682520697764 NaN 0 544.7793579101562 PEAK HCD FTMS 0 0 0 22562 40321.19921875 1 0 0 7 Unmodified _FSPAEAEGPAL_ REV__ENST00000601048.5_2_19:48281862-48283988:+|nuORF 22.736283301280096 0.2352529050846619 1 P 1 -1 9.732 0 0 0.89488 0 0 147.0723754741593 840.3821505182249 987.4545259923841 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.89488 + + 17 + NaN NaN 100278.9 NaN 18433 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22570 90.22 NaN 117660 35 0 17553 0.261 + 4927 FALSEIEVI 9 44 510.7843467790659 1019.5541406249318 2 510.7843322753906 MULTI HCD FTMS 0 0 0 22562 80718.3828125 0.2565361140531182 6 -0.14305877685546875 8 Unmodified _FALSEIEVI_ ENSG00000242732|ENST00000609883|RTL5 11.640296217721598 0.25978676193971967 1 EV{I|L} 3 6 25.177 0 0 2.4694 0 0 660.3488026349625 0 660.3488026349625 0 22.078343878162343 0 0 0 0.5 0 0 0 + EV{I|L} 2.4694 + + 12 NaN NaN 96093.6 NaN 18434 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22571 90.223 NaN 399040 35 0 26734 0.261 + 33287 YFLWRLLAL 9 73 597.8562492717579 1193.6979456103156 2 597.847412109375 MULTI HCD FTMS 0 0 0 22562 60460.8125 0.5950668784583192 -4 0.0674896240234375 9 Unmodified _YFLWRLLAL_ ENSG00000160781|ENST00000292291|PAQR6;nc|ENSG00000160781|Q6TCH4-4|PAQR6;nc|ENSG00000160781|Q6TCH4-5|PAQR6 2.302733041254933 0.33356062215410776 1 TPPHH[HQ][{M(Oxidation (M))|F}E] 9 9 16.589 0 0 1.3897 0 0 65.1822043015405 0 65.1822043015405 0 9.114999749340388 0 0 0 0 0 1 0.4247425010840047 TPPHH[HQ][{M(Oxidation (M))|F}E] 1.3897 - 270 + NaN NaN 149590 NaN 18435 4134 22562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22573 90.228 NaN 252790 35 0 22984 0.327 + 34079 YNLRQRKTV 9 93 589.3430812954706 1176.671609657741 2 589.3430786132812 MULTI HCD FTMS 0 0 0 22572 82301.1015625 0.507741870618939 -7 0.13494110107421875 1 Unmodified _YNLRQRKTV_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 7.910154910731844 0.2910521888787154 1 [YN]{I|L} 3 6 27.988 0 0 2.3786 0 0 0 783.4584524821224 783.4584524821224 16.459602793084827 0 0 0 0 0 1.5228787452803376 0 0.2302046884880938 + [YN]{I|L} 2.3786 + + 290 NaN NaN 128474.5 NaN 18436 4135 22572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22574 90.232 NaN 174300 35 0 12346 0.261 + 5403 FGYIYESPL 9 70 544.7682520697764 NaN 0 544.7679443359375 PEAK HCD FTMS 0 0 0 22572 28296.939453125 0.701788141260602 1 -0.009490966796875 2 Unmodified _FGYIYESPL_ REV__ENSG00000090402|ENST00000264382|SI;REV__SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;REV__SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;REV__SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant 12.531546534597751 0.23452071659215576 1 {M(Oxidation (M))|F}{I|L}S 3 -1 19.169 0 0 1.7626 0 0 455.1670090164566 282.14560877017817 737.3126177866347 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 {M(Oxidation (M))|F}{I|L}S 1.7626 - 93 + NaN NaN 130473.5 NaN 18437 4135 22572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22576 90.237 NaN 5075700 35 0 709010 0.327 -1 0 109 539.7751241686321 1077.5356954040642 2 539.7749633789062 MULTI HCD FTMS 0 0 0 22575 3757521.5 0.1136526872392733 9 -0.24600982666015625 1 NaN NaN 1 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 94.513 0 0 8.7712 0 0 0 279.09608818300455 279.09608818300455 43.52523206350085 0 0 0 0 2.4361818737241734 1.6989700043360187 0.9674165578762485 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.7712 - 4895 + NaN NaN 775199 NaN 18438 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22577 90.242 NaN 2787100 35 0 617830 0.261 + 7863 FYTFPFQQL 9 102 595.797926759519 1189.5813005858379 2 595.7979125976562 MULTI HCD FTMS 0 0 0 22575 1341242.75 0.3087498274962515 6 -0.16320037841796875 2 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 189.77610602135977 4.071947121966932E-13 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 97.437 0 0 8.1908 8.1908 88.245 0 0 0 4.963352341680476 62.389917747712644 4.963352341680476 3.0102999566398125 0 2.5189301784845295 0 2.341129063296272 0.3252574989159953 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QGA{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QGA{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]GA{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]GA{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YT]P{M(Oxidation (M))|F}QQ{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YT]P{M(Oxidation (M))|F}QGA{I|L} 8.1908;7.9378;7.4168;7.1598;6.9067;6.8939;6.3857;5.8629;5.1231;4.87 +;-;-;-;-;-;-;-;-;- + 7936 NaN NaN 505214.2 NaN 18439 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22578 90.245 NaN 1705000 35 0 359990 0.261 + -1 LCNSVHFAF 9 82 547.7577226917114 1093.5008924502226 2 547.757568359375 MULTI HCD FTMS 0 0 0 22575 732437.6875 0.11602934667464869 9 -0.24600982666015625 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))NSVHFAF_ REV__ENST00000461965.5_1_2:191775005-191792247:+|nuORF 24.67388899826682 0.14717941214954053 1 {I|L}E 2 -1 26.524 0 0 2.4256 0 0 0 848.3512856702187 848.3512856702187 5.35280958067105 0 0 0 0 0.3252574989159953 0 0.3807196863200844 0 {I|L}E 2.4256 - 57 + NaN NaN 333499.2 NaN 18440 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22579 90.249 NaN 2078800 35 0 282130 0.261 + 11835 KEPTPFIIE 9 103 537.2975409550762 1072.5805289769523 2 537.29736328125 MULTI HCD FTMS 0 0 0 22575 538189.125 0.09511854135897663 9 -0.24600982666015625 4 Unmodified _KEPTPFIIE_ ENSG00000115998|ENST00000264434|C2orf42 14.838274106304384 0.23215694253501695 1 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 7 45.812 0 0 4.2712 0 0 148.12155502278478 0 148.12155502278478 0 5.485900363416924 0 0 0 0 0 2.0228787452803374 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 4.2712 - 2795 + NaN NaN 397411.8 NaN 18441 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22580 90.252 NaN 1441800 35 0 523090 0.261 -1 0 91 633.359969593033 632.352693126433 1 633.3607177734375 MULTI HCD FTMS 0 0 0 22575 185612.984375 0.0801254827400696 9 -0.24600982666015625 5 NaN NaN 1 {I|L}S 2 -1 19.949 0 0 3.1546 0 0 0 429.2138765924438 429.2138765924438 6.505149978319906 0 0 0 0 0 0 0.5 0 {I|L}S 3.1546 - 49 + NaN NaN 304884.8 NaN 18442 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22581 90.255 NaN 182690 35 0 19360 0.264 + 28447 TPKTVRKN 8 53 472.28797554779226 942.5613981623845 2 472.287841796875 MULTI HCD FTMS 0 0 0 22575 157395.125 0.10192136464889787 12 -0.3246002197265625 6 Unmodified _TPKTVRKN_ ENSG00000177324|ENST00000380033|BEND2;nc|ENSG00000177324|Q8NDZ0-2|BEND2 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 112631.8 NaN 18443 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22582 90.259 NaN 453590 35 0 46427 0.261 + 7717 FYLMQIVEI 9 65 586.3061227630886 1170.5976925929772 2 586.80859375 MULTI HCD FTMS 0 0 0 22575 102491.2890625 0.5738001658563383 1 -0.03913116455078125 7 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 60.07390631473393 0.0174780869009295 1 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 5 65.125 0 0 5.5634 0 0 244.17810256172032 0 244.17810256172032 0 52.19351057653448 0 0 0 2.504432191740108 0 0.3494850021680094 0 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 5.5634 - 899 NaN NaN 148776 NaN 18444 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22583 90.262 NaN 283270 35 0 22904 0.261 + 7756 FYNDHIYQI 9 62 606.7885799327526 1211.562606932305 2 606.7889404296875 MULTI HCD FTMS 0 0 0 22575 127294.234375 0.17944408316510424 9 -0.24600982666015625 8 Unmodified _FYNDHIYQI_ REV__ENSG00000177000|ENST00000376590|MTHFR;REV__nc|ENSG00000177000|P42898-2|MTHFR 27.223235318498237 0.1251536255799991 1 VE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}TYE 8 -1 52.23 0 0 4.311 0 0 183.06591994453282 0 183.06591994453282 0 28.03899677719091 0 0 0 0.4247425010840047 0 1.0114393726401687 0.4247425010840047 VE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}TYE 4.311 - 274 NaN NaN 131400.9 NaN 18445 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22584 90.265 NaN 152710 35 0 8467.5 0.264 + 14796 LILSWFLAFLS 11 58 437.25718867984483 1308.7497366397345 3 437.2572326660156 MULTI HCD FTMS 0 0 0 22575 102660.3671875 0.9461341493857107 4 -0.10094451904296875 9 Unmodified _LILSWFLAFLS_ ENST00000443016.1_1_10:11607160-11607337:-|nuORF 1.3296431237094175 0.4130893034510334 1 K 1 11 1.1092 0 0 0.084756 0 0 872.5208986043814 305.1009615533813 1177.6218601577627 0 0 0 0 0 0 0 0 0 K 0.084756 - 5 + NaN NaN 101581.9 NaN 18446 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22585 90.269 NaN 492760 35 0 43878 0.261 + 19787 NYAWVYYHL 9 74 614.7935413642169 1227.5725297952338 2 614.7924194335938 MULTI HCD FTMS 0 0 0 22575 78040.59375 0.6408758494694353 -2 0.0421142578125 10 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 60.07390631473393 0.0174780869009295 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 53.101 0 0 4.3257 4.3257 83.523 0 0 0 6.590475125574855 30.714562785677654 6.590475125574855 7.2184874961635614 0 2.0994850021680094 1.6989700043360187 0 0.3054621874040891 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWVY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AW[TA][{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]A[{M(Oxidation (M))|F}V]V[MT]{[{M(Oxidation (M))|F}H]|[RQ]};[YN][PG]YV[MT]{[{M(Oxidation (M))|F}H]|[RQ]};[Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}E]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.3257;3.7376;3.6545;3.5974;3.4353;2.4761;2.1671;1.554;0.15167 +;-;-;-;-;-;-;-;- + 366 NaN NaN 163621.4 NaN 18447 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22586 90.272 NaN 193020 35 0 25894 0.262 + 777 ASSFVFLNL 9 55 499.2713361083474 996.5281192834948 2 499.2711486816406 MULTI HCD FTMS 0 0 0 22575 17447.546875 0.09050458211446744 -2 0.0421142578125 11 Unmodified _ASSFVFLNL_ ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 17.11289562659939 0.2125047172822487 1 {I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}N{I|L} 6 4 36.604 0 0 3.6731 0 0 245.13736159492345 0 245.13736159492345 0 24.21327198560853 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}N{I|L} 3.6731 - 70 NaN NaN 110515.7 NaN 18448 4136 22575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22588 90.277 NaN 1148200 35 0 46117 0.326 -1 0 120 619.8697049488608 1237.7248569645215 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22587 1062113.375 0.47870076587327026 6 -0.1511383056640625 1 NaN NaN 1 A[RV]N 4 -1 16.203 0 0 1.3091 0 0 779.4512806623062 0 779.4512806623062 0 2.575156255085389 0 0 0 0.6549471895720985 0 0 0.4247425010840047 A[RV]N 1.3091 - 708 NaN NaN 257341.9 NaN 18449 4137 22587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22589 90.281 NaN 125260 35 0 14131 0.263 -1 LLWGVQVT 8 43 479.2732229861703 956.5318930391406 2 479.2732238769531 MULTI HCD FTMS 0 0 0 22587 111266.53125 0.5401097427919904 10 -0.2626190185546875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLWGVQVT_ ENST00000515406.2_1_5:149380015-149380054:-|nuORF 4.75600775471527 0.5349361699807423 1 {I|L} 1 -1 6.9897 0 0 0.73073 0 0 172.1215060482063 668.3029690793684 840.4244751275746 0 0 0 0 0 0 0 0 0 {I|L} 0.73073 + + 9 + NaN NaN 111049.2 NaN 18450 4137 22587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22590 90.285 NaN 229790 35 0 46449 0.261 -1 0 66 405.11870980179765 808.2228666703953 2 405.118896484375 MULTI HCD FTMS 0 0 0 22587 90883.2109375 0.08746154580871796 -12 0.27490997314453125 3 NaN NaN 1 V 1 -1 0.9691 0 0 0.11991 0 0 422.0492044162922 284.07480798892817 706.1240124052204 0 0 0 0 0 0 0 0 0 V 0.11991 - 5 + NaN NaN 121655.3 NaN 18451 4137 22587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22592 90.29 NaN 3549000 35 0 1217300 0.327 -1 ASCAWSWEI 9 94 555.2396959410551 1108.46483894891 2 555.2401123046875 MULTI HCD FTMS 0 0 0 22591 2033002.125 0.1473643571586384 11 -0.3021240234375 1 Carbamidomethyl (C) _ASC(Carbamidomethyl (C))AWSWEI_ ENST00000466336.5_1_6:31940188-31948320:+|nuORF 20.453626601364224 0.18364154288633264 1 TACYE{I|L} 6 -1 27.646 0 0 2.4941 0 0 410.1726246564469 0 410.1726246564469 0 12.707763026890325 0 0 0 0.9386218330464625 0 0.23965182871044374 0 TACYE{I|L} 2.4941 - 1241 NaN NaN 633971 NaN 18452 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22593 90.294 NaN 751280 35 0 126910 0.261 + 22997 RAGNCFLETHD 11 94 631.7828846331324 1261.5512163330648 2 631.7830810546875 MULTI HCD FTMS 0 0 0 22591 466961.09375 0.5669203477320235 -7 0.13893890380859375 2 Unmodified _RAGNCFLETHD_ ENSG00000142449|ENST00000600128|FBN3 8.155526934196011 0.3831532958467648 1 {M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F}EQPE 8 9 55.677 0 0 4.4134 0 0 240.02359206367345 0 240.02359206367345 0 39.206094119810544 0 0 0 2.4291746928241125 0 0.5 0 {M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F}EQPE 4.4134 - 984 NaN NaN 198977.1 NaN 18453 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22594 90.298 NaN 817250 35 0 162710 0.261 + 4577 EYLPIGGLAEF 11 71 604.8136346654404 1207.6127163976807 2 604.8140258789062 MULTI HCD FTMS 0 0 0 22591 465812.75 0.6739951504569247 -2 0.05197906494140625 3 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 128.93241758739586 0.009902055992489198 1 [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F} 11 0 + 115.47 0 0 9.5618 9.5618 92.064 0 0 0 34.54175123101666 108.48486077537231 34.54175123101666 7.812898245978161 0 2.5356668758921828 1.3010299956639813 1.8411290632962718 0 + + [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}N{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G[Q{I|L}]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]{[TV]|[{I|L}S]}G{I|L}AE{M(Oxidation (M))|F} 9.5618;8.9148;6.9444;3.7239 +;-;-;- + 402 NaN NaN 208654.7 NaN 18454 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22595 90.301 NaN 452460 35 0 80000 0.262 + 32219 VYTLDIPVL 9 49 516.802782932409 1031.5910129316178 2 516.8026733398438 MULTI HCD FTMS 0 0 0 22591 277924.875 0.5649205019623527 8 -0.22021484375 4 Unmodified _VYTLDIPVL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 85.35673624503755 0.00464763827098139 1 [YV][{I|L}T]D{I|L}PV{I|L} 9 0 + 72.813 0 0 7.0583 7.0583 95.263 0 0 0 9.475804265199876 65.82350796497103 9.475804265199876 72.81320800833122 0 2.1549471895720984 1.3979400086720375 1.2302046884880937 0 + + [YV][{I|L}T]D{I|L}PV{I|L} 7.0583 + + 89 NaN NaN 157214.4 NaN 18455 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22596 90.304 NaN 433440 35 0 43369 0.261 -1 FYLMQIVEI 9 72 586.3061227630886 1170.5976925929772 2 586.3055419921875 MULTI HCD FTMS 0 0 0 22591 273114.0625 1 0 0 5 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 51.629811660486645 0.02929079705179888 1 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 -1 58.153 0 0 4.9678 0 0 244.17808730293126 0 244.17808730293126 0 40.44994474394521 0 0 0 1.8494850021680094 0 1.110924374808178 0 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 4.9678 - 634 NaN NaN 151381.2 NaN 18456 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22597 90.307 NaN 275350 35 0 14218 0.261 -1 0 71 622.3475010661663 621.3402245995662 1 622.3472900390625 MULTI HCD FTMS 0 0 0 22591 171347.078125 0.4068860508917518 10 -0.27262115478515625 6 NaN NaN 1 [YN]{I|L} 3 -1 16.655 0 0 2.6806 0 0 0 228.12688166427247 228.12688166427247 9.163865622122673 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L} 2.6806 - 21 NaN NaN 126078.4 NaN 18457 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22598 90.311 NaN 357720 35 0 50909 0.261 -1 MTSHLSLMEL 10 92 589.2823358593479 1176.5501187854957 2 589.2822265625 MULTI HCD FTMS 0 0 0 22591 149718.453125 0.7294984973382236 -2 0.05197906494140625 7 Oxidation (M) _MTSHLSLM(Oxidation (M))EL_ ENST00000502304.5_3_3:129168718-129168754:+|nuORF 12.240655878213236 0.39661705172222156 1 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E{I|L} 9 -1 + 68.712 0 0 5.8401 5.8401 91.272 0 0 0 25.066504924811625 53.25409255105575 25.066504924811625 25 0 1.774227503252014 1.6989700043360187 0 0.28872548999643577 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}[PA][NP]{M(Oxidation (M))|F}E{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][WM]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.8401;3.7152;2.3176;0.29762 -;-;-;- 322 NaN NaN 140306.2 NaN 18458 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22599 90.314 NaN 458010 35 0 41967 0.261 -1 SPMDIFDMF 9 83 567.7279453263786 1133.4413377195572 2 567.728271484375 MULTI HCD FTMS 0 0 0 22591 212548.78125 0.9410661160295128 8 -0.22021484375 8 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 40.962 0 0 3.6139 0 0 559.2317949251138 0 559.2317949251138 0 24.76403468139864 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6139 + + 253 + NaN NaN 156021.2 NaN 18459 4138 22591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22601 90.319 NaN 149670 35 0 7261.9 0.327 + 20901 PKEVRERIQK 10 72 641.8826808965405 1281.7508088598809 2 641.8826904296875 MULTI HCD FTMS 0 0 0 22600 165485.390625 0.24568760698167008 12 -0.3251495361328125 1 Unmodified _PKEVRERIQK_ ENSG00000103356|ENST00000449606|EARS2;ENST00000564987.1_1_16:23535694-23546228:-|nuORF 1.6526216038709556 0.46655611578153744 1 {I|L}{[{M(Oxidation (M))|F}D]|MM}WMVD{I|L}{I|L} 9 9 9.5873 0 0 0.74798 0 0 131.22878232774661 0 131.22878232774661 0 4.98319373273603 0 0 0 0 0 0 0 {I|L}{[{M(Oxidation (M))|F}D]|MM}WMVD{I|L}{I|L} 0.74798 - 122 + NaN NaN 109740.1 NaN 18460 4139 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22602 90.323 NaN 343920 35 0 28117 0.262 + 33729 YLDPDVHLE 9 78 550.7663157476503 1099.5180785621005 2 550.7666625976562 MULTI HCD FTMS 0 0 0 22600 84345.5234375 0.047479474310714205 8 -0.22035980224609375 2 Unmodified _YLDPDVHLE_ REV__ENSG00000181804|ENST00000316549|SLC9A9 12.531546534597751 0.2520865569484384 1 [Y{I|L}]V 3 -1 19.041 0 0 1.7318 0 0 0 721.2795586248536 721.2795586248536 3.819911470947165 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]V 1.7318 - 257 NaN NaN 138060 NaN 18461 4139 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22603 90.327 NaN 295010 35 0 46983 0.261 + 10716 IQFADYIFPA 10 55 592.8031085699499 1183.5916642066998 2 592.8030395507812 MULTI HCD FTMS 0 0 0 22600 82990.1953125 0.5876065314783336 1 -0.01955413818359375 3 Unmodified _IQFADYIFPA_ ENSG00000083123|ENST00000320393|BCKDHB;nc|ENSG00000083123|P21953-2|BCKDHB 17.11289562659939 0.35104376501799556 1 [YQ]Y[VP]S{I|L}AP{M(Oxidation (M))|F} 10 7 + 60.896 0 0 5.145 5.145 84.889 0 0 0 3.9131874559705437 49.65858457933251 3.9131874559705437 7.314309196763702 0 2.1549471895720984 0 0.7742275032520141 0 [YQ]Y[VP]S{I|L}AP{M(Oxidation (M))|F};[YV]A{I|L}SEG{I|L}W{M(Oxidation (M))|F};[YV]A{I|L}{[CT]|[{M(Oxidation (M))|F}G]}S[KG]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]A{I|L}S{[CT]|[{M(Oxidation (M))|F}G]}[KG]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]A{[MS]|[{M(Oxidation (M))|F}A]}{[DA]|[EG]}{I|L}AP{M(Oxidation (M))|F};[YV][Y{I|L}]T[NP]AP{M(Oxidation (M))|F};[YV]A[NP]T[{I|L}P]Y{M(Oxidation (M))|F};[YV][Y{I|L}]T[WP]{[QD]|[EN]|[WG]|[KD]|[RS]} 5.145;4.527;2.876;2.5737;2.5693;2.2068;1.3823;0.47484 -;-;-;-;-;-;-;- 445 NaN NaN 128429.8 NaN 18462 4139 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22604 90.33 NaN 202130 35 0 25622 0.262 + 14910 LLASAGLLLL 10 39 492.3286551576939 982.6427573821878 2 492.32867431640625 MULTI HCD FTMS 0 0 0 22600 55148.95703125 0.29883046587480516 -7 0.15573883056640625 4 Unmodified _LLASAGLLLL_ ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1 32.30548876998284 0.21217886106551395 1 {I|L}{I|L}{I|L}{I|L} 4 6 45.433 0 0 4.6236 0 0 512.2960682599625 0 512.2960682599625 0 45.43305028184122 0 0 0 1.5 0 0 0 + {I|L}{I|L}{I|L}{I|L} 4.6236 + + 21 NaN NaN 113303.8 NaN 18463 4139 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22605 90.334 NaN 102880 35 0 14040 0.261 -1 LFCTILICYS 10 50 637.8119643786403 1273.6093758240804 2 637.8120727539062 MULTI HCD FTMS 0 0 0 22600 67658 0.7593784096063619 -1 0.02941131591796875 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LFCTILIC(Carbamidomethyl (C))YS_ ENST00000288447.8_1_X:33357402-33357459:-|nuORF 1.4819007175156935 0.4674597685733628 1 H 1 -1 3.4949 0 0 0.27441 0 0 535.2313983844305 598.2979220025999 1133.5293203870303 0 0 0 0 0 0 0 0 0 H 0.27441 - 3 + NaN NaN 93125.4 NaN 18464 4139 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22607 90.339 NaN 14691000 35 0 2405200 0.327 + 27625 TAISLFYEL 9 96 528.7842518804308 1055.5539508276615 2 528.7833862304688 MULTI HCD FTMS 0 0 0 22606 13393673 0.09942723791426998 13 -0.3579254150390625 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 107.85 0 0 10.217 10.217 98.316 0 0 0 17.769250191953674 16.478174818886373 16.478174818886373 37.99085977895906 0 2.610924374808178 1.3979400086720375 1.916386562212267 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}S{I|L}EY{I|L}{M(Oxidation (M))|F};[TA]{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}YE{I|L};[TA]{I|L}S[YE]{I|L}{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[TA]{I|L}S[RP][HQ]{M(Oxidation (M))|F};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L} 10.217;6.6179;6.2565;6.1803;4.7061;4.4741;4.2203;3.1413;3.0912;2.9745 +;-;-;-;-;-;-;-;-;- + 2698 NaN NaN 934779.9 NaN 18465 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22608 90.343 NaN 1718000 35 0 95088 0.261 -1 0 111 611.3564525007829 1220.6983520683657 2 611.3562622070312 MULTI HCD FTMS 0 0 0 22606 2412333.75 0.7070241128690481 27 -0.7378311157226562 2 NaN NaN 1 {[HG]|PP}N 3 -1 9.7936 0 0 0.8023 0 0 0 909.4913347980122 909.4913347980122 0.9421249706470309 0 0 0 0 0.6861818737241735 0 0 0 {[HG]|PP}N 0.8023 - 144 + NaN NaN 344465.8 NaN 18466 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22609 90.346 NaN 2742400 35 0 589910 0.261 + 20236 NYLPFIMEL 9 91 578.2914266037084 1154.5683002742167 2 578.2915649414062 MULTI HCD FTMS 0 0 0 22606 1590917.125 1 0 0 3 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 181.3275282027936 9.859558525874733E-13 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 112.76 0 0 9.7662 9.7662 97.336 0 0 0 26.94537812595911 16.478174818886373 16.478174818886373 26.94537812595911 0 2.6549471895720984 1.3010299956639813 0 2.159379381312206 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}MPY{I|L}{I|L}YN;{[QN]|[E{I|L}]|[KN]}MPY{I|L}{I|L}NY;{[QN]|[E{I|L}]|[KN]}MPY{I|L}[YN]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PY{I|L}{I|L}YN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PY{I|L}{I|L}NY 9.7662;7.4324;5.4946;5.3024;4.4793;1.8819;1.7736;1.7129;1.6211;1.5129 +;-;-;-;-;-;-;-;-;- + 1303 NaN NaN 492166 NaN 18467 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22610 90.35 NaN 754220 35 0 208090 0.261 -1 0 88 633.359969593033 632.352693126433 1 633.371337890625 MULTI HCD FTMS 0 0 0 22606 132460.078125 0.057180416226217785 13 -0.3579254150390625 4 NaN NaN 1 M{I|L} 2 -1 19.464 0 0 3.078 0 0 370.21968276191564 0 370.21968276191564 0 8.661968799114844 0 0 0 0 0 0 0 M{I|L} 3.078 - 25 NaN NaN 199333.2 NaN 18468 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22611 90.353 NaN 304480 35 0 44430 0.263 + 22401 QPSPILEFL 9 58 522.2926423766946 1042.5707318201892 2 522.2923583984375 MULTI HCD FTMS 0 0 0 22606 112705.4296875 0.4538749640000133 -5 0.11043548583984375 5 Unmodified _QPSPILEFL_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 52.268347100219714 0.028397529699942435 1 E{M(Oxidation (M))|F}{I|L} 3 6 43.258 0 0 4.1491 0 0 635.3635373943749 0 635.3635373943749 0 26.267959391884546 0 0 0 1 0 0.7059771852360797 0 + E{M(Oxidation (M))|F}{I|L} 4.1491 + + 125 NaN NaN 129975.1 NaN 18469 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22612 90.356 NaN 201640 35 0 12987 0.262 + 22395 QPRPQRRQR 9 65 407.9063024768881 1220.6970780308643 3 407.9063720703125 MULTI HCD FTMS 0 0 0 22606 89645.0625 0.24533222633554913 10 -0.276031494140625 6 Unmodified _QPRPQRRQR_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 0.9622753412299311 0.3437222896773173 1 [{M(Oxidation (M))|F}E]{I|L} 3 -1 13.952 0 0 1.143 0 0 0 828.511933337758 828.511933337758 6.962724883926656 0 0 0 0 0 0 0.6989700043360187 0 [{M(Oxidation (M))|F}E]{I|L} 1.143 - 19 NaN NaN 109106.5 NaN 18470 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22613 90.36 NaN 276540 35 0 37977 0.261 + 18510 MRSAVVDVED 10 64 560.7701557434464 1119.5257585536926 2 560.7695922851562 MULTI HCD FTMS 0 0 0 22606 126671.703125 0.738198169371682 -3 0.0618133544921875 7 Unmodified _MRSAVVDVED_ REV__ENSG00000165186|ENST00000379361|PTCHD1;REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1 32.78568957990786 0.20801173326193015 1 AE[QT]AQ{I|L}D 8 -1 58.919 0 0 5.2629 0 0 245.1369343488297 0 245.1369343488297 0 39.469034597845436 0 0 0 1 0 1.2302046884880937 0.3252574989159953 AE[QT]AQ{I|L}D 5.2629 - 376 NaN NaN 125886.5 NaN 18471 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22614 90.363 NaN 333140 35 0 40444 0.261 + 5247 FFDPSLLHLL 10 67 601.334649165231 1200.6547453972619 2 601.33447265625 MULTI HCD FTMS 0 0 0 22606 49022.11328125 0.03043608083513701 34 -0.9490585327148438 8 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 19.256988751693697 0.33098864134661865 1 [YV]V{I|L}TN{I|L}AY 9 9 59.003 0 0 4.9143 0 0 0 161.0741954358081 161.0741954358081 30.05855408704319 0 0 0 0 0 1.5228787452803376 1.2887254899964358 1.086696871556164 [YV]V{I|L}TN{I|L}AY 4.9143 - 527 NaN NaN 135074.6 NaN 18472 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22615 90.366 NaN 104010 35 0 7341.6 0.261 -1 0 45 541.303439916993 540.296163450393 1 542.3065185546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 115548.1 NaN 18473 4140 22606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22617 90.371 NaN 1861500 35 0 284580 0.327 + 29922 VFDWIEANL 9 91 553.7796217407689 1105.5446905483377 2 553.7796630859375 MULTI HCD FTMS 0 0 0 22616 1155151.5 0.8451722256127312 -4 0.09458160400390625 1 Unmodified _VFDWIEANL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 149.91393105778798 8.917243180786556E-06 1 [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L} 9 0 + 85.983 0 0 7.7774 7.7774 92.925 0 0 0 3.181277912325342 55.17167844819086 3.181277912325342 13.015384402724592 0 2.6861818737241734 0 1.3252574989159953 0.3807196863200844 + + [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}EAGG{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAN{I|L};{NN|[MP]|[D{I|L}]|[EV]}W{M(Oxidation (M))|F}VEAN{I|L};[{M(Oxidation (M))|F}V][WE]VEAN{I|L};{NN|[MP]|[D{I|L}]|[EV]}WV{M(Oxidation (M))|F}EAN{I|L};[WD]{M(Oxidation (M))|F}{I|L}VEAN{I|L};[WD]{I|L}{M(Oxidation (M))|F}VEAN{I|L};[WD]{I|L}V{M(Oxidation (M))|F}EAN{I|L};{NN|[MP]|[D{I|L}]|[EV]}W{M(Oxidation (M))|F}VEAGG{I|L} 7.7774;6.6002;6.1125;5.9991;5.7844;5.6806;5.6153;5.5365;5.218;5.1662 +;-;-;-;-;-;-;-;-;- + 5106 NaN NaN 360805.9 NaN 18474 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22618 90.376 NaN 927670 35 0 92578 0.261 + -1 RCNSEVCEL 9 99 555.2396959410551 1108.46483894891 2 556.73046875 MULTI HCD FTMS 0 0 0 22616 97311.5546875 0.03562614333115593 14 -0.3774566650390625 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))NSEVCEL_ REV__ENST00000473882.1_1_11:25610023-25610134:-|nuORF 15.847184025352803 0.2234401846867398 1 Q{I|L}{I|L}ES{M(Oxidation (M))|F} 6 -1 40.979 0 0 3.6969 0 0 373.0852745951975 0 373.0852745951975 0 0.22415530258214744 0 0 0 0 0 0.6989700043360187 0 Q{I|L}{I|L}ES{M(Oxidation (M))|F} 3.6969 - 446 + NaN NaN 235727.4 NaN 18475 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22619 90.379 NaN 604890 35 0 154390 0.261 + 12307 KLTVYTTLIDV 11 91 633.3700071326913 1264.7254613321825 2 633.8711547851562 MULTI HCD FTMS 0 0 0 22616 182325 0.3400575878409246 14 -0.3774566650390625 3 Unmodified _KLTVYTTLIDV_ ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1;nc|ENSG00000104763|Q13510-3|ASAH1 6.234356020891411 0.3915788988406848 1 N{I|L}{M(Oxidation (M))|F}EAV 6 9 16.926 0 0 1.3383 0 0 276.2277939511262 312.14972864322505 588.3775225943513 0 0 0 0 0 0.3494850021680094 0 0.3807196863200844 0 N{I|L}{M(Oxidation (M))|F}EAV 1.3383 - 230 + NaN NaN 169181.2 NaN 18476 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22620 90.383 NaN 893990 35 0 107000 0.261 + 32353 VYVLTNLAYF 10 95 601.8264220272304 1201.6382911212606 2 601.82568359375 MULTI HCD FTMS 0 0 0 22616 324306.75 0.19587159232498907 -4 0.09458160400390625 4 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 185.05004568166646 2.950885128264942E-16 1 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 0 + 118.66 0 0 9.8746 9.8746 91.261 0 0 0 17.894680962404124 88.11365663899274 17.894680962404124 5.255762612236907 0 3.1549471895720984 1.3010299956639813 1.5598943791441968 1.4163865622122673 + + [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTGG{I|L}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F};[YV]A{I|L}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F};[YV]{I|L}A{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F};[YV]VVV{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KG][RK]AY{M(Oxidation (M))|F};[YV]V{I|L}[NS]VVY{M(Oxidation (M))|F} 9.8746;9.4372;7.9332;7.4958;5.6663;5.5054;5.5054;5.2805;5.1079;4.642 +;-;-;-;-;-;-;-;-;- + 4170 NaN NaN 229523.2 NaN 18477 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22621 90.386 NaN 441350 35 0 65351 0.261 -1 FVDERKTMS 9 78 564.7706766616615 1127.5268003901228 2 564.7703857421875 MULTI HCD FTMS 0 0 0 22616 121865.7265625 0.9130878508865587 -4 0.09458160400390625 5 Oxidation (M) _FVDERKTM(Oxidation (M))S_ ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L 14.838274106304384 0.23215694253501695 1 AE{I|L}WDD{I|L} 7 -1 68.888 0 0 6.1097 0 0 267.1185780255875 0 267.1185780255875 0 61.89851049298127 0 0 0 2.079689690656103 0 0 0 AE{I|L}WDD{I|L} 6.1097 - 361 NaN NaN 155614.1 NaN 18478 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22622 90.389 NaN 241390 35 0 26257 0.261 + 21244 PRKGQRTALPA 11 82 597.8562492717579 1193.6979456103156 2 597.8563232421875 MULTI HCD FTMS 0 0 0 22616 71465.203125 0.703374195343198 3 -0.0827484130859375 6 Unmodified _PRKGQRTALPA_ REV__ENSG00000125965|ENST00000374369|GDF5 2.735195868890462 0.4069250265843076 1 M 1 -1 6.5938 0 0 0.55238 0 0 633.3318700261344 426.30100427799067 1059.6328743041252 0 0 0 0 0 0.5 0 0 0 M 0.55238 - 196 + NaN NaN 130016.4 NaN 18479 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22623 90.393 NaN 124040 35 0 21138 0.261 + 16642 LWDHYKNL 8 53 544.7789933530202 NaN 0 544.7787475585938 PEAK HCD FTMS 0 0 0 22616 19838.455078125 0.07235843311868867 10 -0.2728271484375 7 Unmodified _LWDHYKNL_ REV__ENSG00000129071|ENST00000429544|MBD4;REV__nc|ENSG00000129071|O95243-6|MBD4;REV__nc|ENSG00000129071|O95243|MBD4 15.847184025352803 0.3871869056683869 1 WEH 3 -1 16.114 0 0 1.4817 0 0 112.10973123553397 520.2388399713499 632.3485712068839 0 0 0 0 0 0 0 0.3807196863200844 0 WEH 1.4817 - 67 + NaN NaN 107681.2 NaN 18480 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22624 90.396 NaN 93238 35 0 9564.3 0.261 + 4347 EVWKKNES 8 51 510.26241414895884 1018.5102753647177 2 510.26263427734375 MULTI HCD FTMS 0 0 0 22616 16538.2734375 0.4222796769855173 3 -0.0827484130859375 8 Unmodified _EVWKKNES_ REV__ENSG00000172578|ENST00000341319|KLHL6 4.75600775471527 0.5349361699807423 1 CN{I|L} 3 -1 12.932 0 0 1.2697 0 0 670.36821181465 0 670.36821181465 0 6.9897000433601875 0 0 0 0 0 0 0 CN{I|L} 1.2697 - 13 NaN NaN 105571.6 NaN 18481 4141 22616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22626 90.401 NaN 2607300 35 0 287510 0.327 -1 0 117 539.7751241686321 1077.5356954040642 2 539.7756958007812 MULTI HCD FTMS 0 0 0 22625 1064875.125 0.0322089759248236 15 -0.3936920166015625 1 NaN NaN 1 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 84.518 0 0 7.8436 0 0 0 279.0961966666618 279.0961966666618 49.23979484917851 0 0 0 0 2.2856668758921828 1.5228787452803376 0.6747425010840047 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7.8436 - 8110 + NaN NaN 496434.2 NaN 18482 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22627 90.405 NaN 773540 35 0 138680 0.317 + 7864 FYTFPFQQL 9 94 595.797926759519 1189.5813005858379 2 595.7980346679688 MULTI HCD FTMS 0 0 0 22625 271589.625 0.06251907036852325 12 -0.3217620849609375 2 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 147.05914393524117 1.1935124485855994E-05 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 77.955 0 0 6.5532 6.5532 86.815 0 0 0 3.2568864632742844 33.41948966737293 3.2568864632742844 6.064921830680703 0 2.2689301784845295 0 1.8556270500406935 0.28872548999643577 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YT]P{M(Oxidation (M))|F}QQ{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YT]P{M(Oxidation (M))|F}Q[AG]{I|L} 6.5532;6.0433;5.7791;5.7791;5.2693;5.2693;4.766;4.716;4.2562;3.9419 +;-;-;-;-;-;-;-;-;- + 4139 NaN NaN 198973 NaN 18483 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22628 90.41 NaN 963940 35 0 190300 0.261 + -1 LCNSVHFAF 9 71 547.7577226917114 1093.5008924502226 2 547.7579956054688 MULTI HCD FTMS 0 0 0 22625 237709.609375 0.0376568425475337 15 -0.3936920166015625 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))NSVHFAF_ REV__ENST00000461965.5_1_2:191775005-191792247:+|nuORF 7.910154910731844 0.2910521888787154 1 [YT]P 3 -1 22.932 0 0 2.0971 0 0 0 729.3146491243039 729.3146491243039 6.555906640182407 0 0 0 0 0 2 0 0 [YT]P 2.0971 - 69 NaN NaN 229311.5 NaN 18484 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22629 90.413 NaN 913630 35 0 114520 0.261 -1 0 87 537.2975409550762 1072.5805289769523 2 537.2975463867188 MULTI HCD FTMS 0 0 0 22625 163171.59375 0.028838642900336393 15 -0.3936920166015625 4 NaN NaN 1 [YE]{I|L}VKYE 7 -1 35.098 0 0 3.2723 0 0 0 145.09884689601816 145.09884689601816 8.311309117919642 0 0 0 0 0 1.0457574905606752 1.110924374808178 0 [YE]{I|L}VKYE 3.2723 - 1142 NaN NaN 216142.7 NaN 18485 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22630 90.416 NaN 1320900 35 0 148340 0.261 + 7440 FVTASILLCF 10 95 557.3062334053812 1112.5979138775624 2 557.2947387695312 MULTI HCD FTMS 0 0 0 22625 65109.046875 0.7863369909730248 2 -0.05326080322265625 5 Unmodified _FVTASILLCF_ REV__ENSG00000170017|ENST00000306107|ALCAM;REV__ENST00000470756.5_1_3:105086066-105243357:+|nuORF;REV__nc|ENSG00000170017|Q13740-2|ALCAM;REV__nc|ENSG00000170017|Q13740-3|ALCAM 25.399314129420986 0.2735354021946395 1 Q{I|L}{I|L}ES{M(Oxidation (M))|F} 6 -1 56.824 0 0 5.1073 0 0 377.2178612425999 0 377.2178612425999 0 -0.5322347674085748 -0.5322347674085748 0 0 0.3807196863200844 0 1.6016784832448856 0 Q{I|L}{I|L}ES{M(Oxidation (M))|F} 5.1073 - 715 + NaN NaN 297191.6 NaN 18486 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22631 90.42 NaN 77113 35 0 11595 0.262 + 19657 NVISKNRI 8 39 472.28797554779226 942.5613981623845 2 472.2874755859375 MULTI HCD FTMS 0 0 0 22625 62248.94140625 0.040309361907328985 18 -0.47232818603515625 6 Unmodified _NVISKNRI_ tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 91809.5 NaN 18487 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22632 90.423 NaN 297920 35 0 24488 0.261 -1 VFFNQGQCC 9 76 580.2349291257875 1158.455305318375 2 580.2346801757812 MULTI HCD FTMS 0 0 0 22625 42312.2265625 0.6859309907929381 -1 0.02948760986328125 7 2 Carbamidomethyl (C) _VFFNQGQC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000128918|ENST00000249750|ALDH1A2;ENSG00000184254|ENST00000329841|ALDH1A3;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;nc|ENSG00000128918|O94788-4|ALDH1A2 4.75600775471527 0.31496297302216103 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 9.1812 0 0 0.79254 0 0 768.2652614632908 0 768.2652614632908 0 3.6080184802477806 0 0 0 0.3494850021680094 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.79254 - 124 + NaN NaN 124629.3 NaN 18488 4142 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22634 90.428 NaN 950740 35 0 39195 0.327 -1 0 112 619.8697049488608 1237.7248569645215 2 619.869384765625 MULTI HCD FTMS 0 0 0 22633 1005470.25 0.4531713751724373 12 -0.32089996337890625 1 NaN NaN 1 D[RV]ATK 6 -1 22.277 0 0 1.7999 0 0 105.07925923428986 459.22309252396 564.3023517582499 0 0 0 0 0 1.1956290139465235 0 0.6203715150305281 0.9247425010840047 D[RV]ATK 1.7999 - 750 + NaN NaN 228691.1 NaN 18489 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22635 90.432 NaN 1086600 35 0 226630 0.261 + 22332 QPLHQHSCSPE 11 96 631.7828846331324 1261.5512163330648 2 631.7831420898438 MULTI HCD FTMS 0 0 0 22633 465740.28125 0.5654382040239523 -2 0.05655670166015625 2 Unmodified _QPLHQHSCSPE_ REV__nc|ENSG00000215568|Q2WGN9|GAB4 7.608950283845883 0.38555039536024605 1 [QP]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}C 8 -1 49.462 0 0 3.9207 0 0 0 281.0568065032398 281.0568065032398 28.44335023848103 0 0 0 0 1.6989700043360187 0 0.6237125054200234 0.7614393726401688 [QP]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}C 3.9207 - 564 NaN NaN 254041.4 NaN 18490 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22636 90.436 NaN 308070 35 0 36679 0.263 + 778 ASSFVFLNL 9 67 499.2713361083474 996.5281192834948 2 499.2712707519531 MULTI HCD FTMS 0 0 0 22633 117423.0546875 0.6091013579865475 5 -0.13433074951171875 3 Unmodified _ASSFVFLNL_ ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 30.636539890814138 0.10832830463492794 1 S{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 5 4 22.932 0 0 2.3012 0 0 404.2445021954073 0 404.2445021954073 0 7.21340305007878 0 0 0 0.8494850021680094 0 0 0 S{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 2.3012 - 219 + NaN NaN 137893.2 NaN 18491 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22637 90.439 NaN 452780 35 0 59784 0.261 + 34080 YNLRQRKTV 9 96 589.3430812954706 1176.671609657741 2 589.3432006835938 MULTI HCD FTMS 0 0 0 22633 129669.421875 0.799972218778756 1 -0.02619171142578125 4 Unmodified _YNLRQRKTV_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 7.910154910731844 0.2910521888787154 1 [YN]{I|L} 3 6 30.7 0 0 2.609 0 0 0 783.4584801499904 783.4584801499904 18.860170110875686 0 0 0 0 0 1.6989700043360187 0 0.3252574989159953 + [YN]{I|L} 2.609 + + 427 NaN NaN 142677.3 NaN 18492 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22638 90.442 NaN 129120 35 0 7116.7 0.264 + 14797 LILSWFLAFLS 11 50 437.25718867984483 1308.7497366397345 3 437.2575988769531 MULTI HCD FTMS 0 0 0 22633 47279.15234375 0.43573213121994353 11 -0.2946929931640625 5 Unmodified _LILSWFLAFLS_ ENST00000443016.1_1_10:11607160-11607337:-|nuORF 1.3296431237094175 0.4130893034510334 1 K 1 11 0.71334 0 0 0.054505 0 0 872.5216005086783 305.10102258853755 1177.6226230972159 0 0 0 0 0 0 0 0 0 K 0.054505 - 1 + NaN NaN 115307.5 NaN 18493 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22639 90.446 NaN 105770 35 0 11256 0.261 -1 CHHWPLLSL 9 48 581.793934460763 1161.573315988326 2 581.7944946289062 MULTI HCD FTMS 0 0 0 22633 37766.2109375 0.6234022261201093 -2 0.05655670166015625 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))HHWPLLSL_ ENST00000487903.5_1_13:113536502-113536748:+|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}S{I|L} 3 -1 39.693 0 0 3.4172 0 0 830.3647328107437 0 830.3647328107437 0 39.69273760456403 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}S{I|L} 3.4172 + + 11 NaN NaN 107516 NaN 18494 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22640 90.449 NaN 151490 35 0 11891 0.261 + 20877 PIMGQKLSF 9 51 510.78330536410454 NaN 0 510.7837219238281 PEAK HCD FTMS 0 0 0 22633 24071.955078125 1 0 0 7 Unmodified _PIMGQKLSF_ REV__ENSG00000196900|ENST00000357147|TEX43 10.823927491677226 0.2427956001690155 1 G 1 -1 11.99 0 0 1.176 0 0 797.4517903162966 162.05584131412346 959.5076316304201 0 0 0 0 0 0.5 0 0 0 G 1.176 + + 17 + NaN NaN 110368.4 NaN 18495 4143 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22642 90.454 NaN 724850 35 0 148830 0.327 + 4578 EYLPIGGLAEF 11 71 604.8136346654404 1207.6127163976807 2 604.8138427734375 MULTI HCD FTMS 0 0 0 22641 308030.3125 0.4456961232141693 4 -0.1081390380859375 1 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 96.93554129104106 0.016062447042443723 1 [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F} 11 0 + 113.41 0 0 9.3912 9.3912 94.734 0 0 0 28.40675759133535 104.89291968783806 28.40675759133535 11.575773191777927 0 2.642159058960253 1.3979400086720375 1.1307196863200843 0 + + [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}N{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G[Q{I|L}]E{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G{[DS]|[MA]|[CV]|TT}[PA]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]{[TV]|[{I|L}S]}G{I|L}AE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][DP][K{I|L}]{I|L}AE{M(Oxidation (M))|F} 9.3912;8.4327;7.0633;5.594;3.8143;2.8557 +;-;-;-;-;- + 484 NaN NaN 199269.2 NaN 18496 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22643 90.458 NaN 625360 35 0 201820 0.264 -1 0 45 405.11870980179765 808.2228666703953 2 405.11895751953125 MULTI HCD FTMS 0 0 0 22641 184197.265625 0.1772624164476366 -5 0.13507080078125 2 NaN NaN 1 V 1 -1 0.088644 0 0 0.010968 0 0 422.0511880588703 284.07455778902977 706.1257458479001 0 0 0 0 0 0 0 0 0 V 0.010968 - 5 + NaN NaN 185566.5 NaN 18497 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22644 90.462 NaN 405550 35 0 46845 0.261 -1 MTSHLSLMEL 10 103 589.2823358593479 1176.5501187854957 2 589.2825317382812 MULTI HCD FTMS 0 0 0 22641 125992.2109375 0.6138931216347133 4 -0.1081390380859375 3 Oxidation (M) _MTSHLSLM(Oxidation (M))EL_ ENST00000502304.5_3_3:129168718-129168754:+|nuORF 17.11289562659939 0.35104376501799556 1 [YN]{I|L}V 4 -1 43.872 0 0 3.7289 0 0 0 684.2638388384831 684.2638388384831 18.36469056403803 0 0 0 0 1 1.6989700043360187 0 0.5891368308784531 [YN]{I|L}V 3.7289 - 411 NaN NaN 136268.9 NaN 18498 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22645 90.465 NaN 495820 35 0 55368 0.262 -1 TLCCCPSVD 9 63 499.19281184831596 996.3710707634319 2 499.19329833984375 MULTI HCD FTMS 0 0 0 22641 98651.609375 0.6915350225734265 -1 0.02619171142578125 4 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))CCPSVD_ ENST00000561269.2_1_15:101186254-101186332:-|nuORF 7.289230182591677 0.29575926068275815 1 [{I|L}T]C(Carbamidomethyl (C))VH 5 -1 32.396 0 0 3.2514 0 0 0 383.0536585688638 383.0536585688638 17.703037561203843 0 0 0 0 0.25 1.3979400086720375 0.75 0 [{I|L}T]C(Carbamidomethyl (C))VH 3.2514 - 218 NaN NaN 155617.2 NaN 18499 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22646 90.469 NaN 86049 35 0 4601.2 0.261 -1 0 48 641.8826808965405 1281.7508088598809 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22641 111500.3203125 0.16553876310051358 17 -0.44524383544921875 5 NaN NaN 1 M 1 -1 9.2917 0 0 0.72493 0 0 692.4354534905434 455.25046716861567 1147.6859206591591 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.72493 - 4 + NaN NaN 102102.2 NaN 18500 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22647 90.472 NaN 429460 35 0 68836 0.262 -1 SQLLDIMKS 9 59 525.7798867429146 1049.5452205526292 2 525.779296875 MULTI HCD FTMS 0 0 0 22641 55772.890625 0.7393284876239713 2 -0.05573272705078125 6 Oxidation (M) _SQLLDIM(Oxidation (M))KS_ ENSG00000134480|ENST00000256897|CCNH;ENST00000510921.5_1_5:86688679-86700752:-|nuORF 19.256988751693697 0.19398022840297344 1 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 -1 42.339 0 0 4.0341 0 0 443.2075263161042 0 443.2075263161042 0 13.690096746917266 0 0 0 0.5 0 0.7302046884880937 0.2614393726401688 {I|L}{I|L}NT{M(Oxidation (M))|F} 4.0341 - 138 + NaN NaN 163147.1 NaN 18501 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22648 90.475 NaN 361520 35 0 49613 0.261 + 15767 LPFSIDPYL 9 51 532.7864162778432 1063.5582796224862 2 532.786865234375 MULTI HCD FTMS 0 0 0 22641 44048.6875 0.26079309662176287 -1 0.02619171142578125 7 Unmodified _LPFSIDPYL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 26.88365393820708 0.12808753336095696 1 DPY{I|L} 4 5 45.745 0 0 4.3012 0 0 557.3207860370457 0 557.3207860370457 0 24.776296993281406 0 0 0 1.3807196863200843 0 0 0 + DPY{I|L} 4.3012 + + 55 NaN NaN 137687.3 NaN 18502 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22649 90.479 NaN 107840 35 0 6929.9 0.261 + 32289 VYTVVDEMFL 10 41 608.3027339902127 NaN 0 608.3031616210938 PEAK HCD FTMS 0 0 0 22641 24689.439453125 0.8571706490665745 1 -0.02954864501953125 8 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 22.736283301280096 0.25846987392193327 1 YNED 4 8 32.423 0 0 2.6694 0 0 132.11759577805816 558.2925333036476 690.4101290817057 0 0 0 0 0 1.3494850021680094 0 0 0 YNED 2.6694 - 59 + NaN NaN 93522.3 NaN 18503 4144 22641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22651 90.484 NaN 7748300 35 0 1253500 0.327 + 27626 TAISLFYEL 9 100 528.7842518804308 1055.5539508276615 2 528.78466796875 MULTI HCD FTMS 0 0 0 22650 6029077 0.04475654088930297 18 -0.47483062744140625 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 188.57702930522862 4.893362302778831E-13 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 111.3 0 0 10.544 10.544 98.342 0 0 0 14.68404217687025 14.68404217687025 14.68404217687025 35.709726536234655 0 2.6549471895720984 1.6989700043360187 1.916386562212267 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}EY{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[YE]{I|L}{I|L}{M(Oxidation (M))|F};[TA]{I|L}S{I|L}[RH]C(Carbamidomethyl (C))V;[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]{I|L}S[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[TA]{I|L}S[RH]SWV;[TA]{I|L}S[RH][QP]{M(Oxidation (M))|F};[TA][HN][RP]T{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[RH]{I|L}C(Carbamidomethyl (C))V 10.544;7.1609;5.3628;4.5847;4.5059;4.4004;4.169;3.9609;3.6966;3.4806 +;-;-;-;-;-;-;-;-;- + 2026 NaN NaN 775911.4 NaN 18504 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22652 90.488 NaN 1313400 35 0 52539 0.261 -1 MKLKNMLLAK 10 109 611.3564525007829 1220.6983520683657 2 611.3562622070312 MULTI HCD FTMS 0 0 0 22650 1823247.75 0.5343705542337324 32 -0.8857498168945312 2 2 Oxidation (M) _M(Oxidation (M))KLKNM(Oxidation (M))LLAK_ ENSG00000174206|ENST00000398055|KICS2 5.731851221503515 0.44496410492002586 1 Q 1 -1 9.6484 0 0 0.7904 0 0 590.351860055998 499.27528279655866 1089.6271428525567 0 0 0 0 0 0.6549471895720985 0 0 0 Q 0.7904 - 293 + NaN NaN 284198.6 NaN 18505 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22653 90.492 NaN 636540 35 0 121270 0.261 + -1 LEEPDVFVM 9 64 547.7577226917114 1093.5008924502226 2 547.7578125 MULTI HCD FTMS 0 0 0 22650 253745.453125 0.04019716577972572 18 -0.47483062744140625 3 Oxidation (M) _LEEPDVFVM(Oxidation (M))_ REV__ENSG00000115423|ENST00000389394|DNAH6;REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 4 -1 25.662 0 0 2.3468 0 0 613.3019921590102 0 613.3019921590102 0 2.390690719683093 0 0 0 0 0 0 0 {M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 2.3468 - 196 + NaN NaN 179922.6 NaN 18506 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22654 90.495 NaN 151960 35 0 18322 0.261 + 15057 LLTGQLLLL 9 43 492.3286551576939 982.6427573821878 2 492.32855224609375 MULTI HCD FTMS 0 0 0 22650 158363.828125 0.858111178956573 -1 0.02954864501953125 4 Unmodified _LLTGQLLLL_ REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF 36.12702656103203 0.08312389501731911 1 {I|L}{I|L}{I|L}{I|L} 4 -1 46.186 0 0 4.7001 0 0 512.29594618965 0 512.29594618965 0 39.195925227640984 0 0 0 1.4247425010840047 0 0 0 {I|L}{I|L}{I|L}{I|L} 4.7001 + + 23 NaN NaN 98992.4 NaN 18507 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22655 90.498 NaN 183180 35 0 11301 0.261 -1 0 56 622.3475010661663 621.3402245995662 1 622.347412109375 MULTI HCD FTMS 0 0 0 22650 156960.453125 0.3727231279171319 17 -0.44195556640625 5 NaN NaN 1 [YN]{I|L} 3 -1 18.161 0 0 2.9228 0 0 0 228.12743098067872 228.12743098067872 12.47425010840047 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L} 2.9228 - 15 NaN NaN 112782.4 NaN 18508 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22656 90.502 NaN 229520 35 0 15933 0.261 + 17221 LYNQLSDTF 9 67 550.7663157476503 1099.5180785621005 2 550.767333984375 MULTI HCD FTMS 0 0 0 22650 61348.51953125 0.03453408477858002 14 -0.3632965087890625 6 Unmodified _LYNQLSDTF_ REV__ENSG00000188848|ENST00000502486|BEND4;REV__nc|ENSG00000188848|Q6ZU67-2|BEND4;REV__nc|ENSG00000188848|Q6ZU67-3|BEND4;REV__nc|ENSG00000188848|Q6ZU67-4|BEND4;REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 10.823927491677226 0.26684000660059787 1 {I|L}MD 3 -1 18.416 0 0 1.6749 0 0 0 737.3413179986936 737.3413179986936 -0.37839947046881406 0 -0.37839947046881406 0 0 0 0 0 0 {I|L}MD 1.6749 - 152 + NaN NaN 130964.3 NaN 18509 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22657 90.505 NaN 93836 35 0 18314 0.261 + 16646 LWDQEERLW 9 42 637.8119643786403 1273.6093758240804 2 637.8116455078125 MULTI HCD FTMS 0 0 0 22650 34239.890625 0.3843009501893092 5 -0.1309661865234375 7 Unmodified _LWDQEERLW_ ENSG00000140478|ENST00000434739|GOLGA6D;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000215186|ENST00000421285|GOLGA6B;ENST00000562938.5_1_15:78207528-78213944:-|nuORF 1.844237919475145 0.33703635659052655 1 W 1 8 14.604 0 0 1.1467 0 0 1069.5197437213444 0 1069.5197437213444 0 7.614393726401687 0 0 0 0 0 0 0 + W 1.1467 + + 4 + NaN NaN 96647.7 NaN 18510 4145 22650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22659 90.51 NaN 1485100 35 0 239810 0.327 + 29923 VFDWIEANL 9 86 553.7796217407689 1105.5446905483377 2 553.7798461914062 MULTI HCD FTMS 0 0 0 22658 1119251.75 0.8189059985365074 1 -0.0295562744140625 1 Unmodified _VFDWIEANL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 137.42381684818497 0.00015474832393368816 1 [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L} 9 0 + 81.046 0 0 7.3308 7.3308 91.944 0 0 0 2.794023012360981 52.250194833045946 2.794023012360981 12.135132206667961 0 2.6549471895720984 0 0.9876954943324545 0.3807196863200844 + + [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}EAQV;[{M(Oxidation (M))|F}V]DW{I|L}EAGG{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAN{I|L};[{M(Oxidation (M))|F}V][WE]VEAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}EA[AG]V;[WD]{M(Oxidation (M))|F}{I|L}VEAN{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[RE]|[WV]}{M(Oxidation (M))|F}EAN{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAQV;[WD]{M(Oxidation (M))|F}V{I|L}EAGG{I|L} 7.3308;6.2332;6.1536;5.7929;5.5224;5.4003;5.3211;5.2339;4.6953;4.6156 +;-;-;-;-;-;-;-;-;- + 4592 NaN NaN 314308 NaN 18511 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22660 90.514 NaN 1372600 35 0 296630 0.261 + 20237 NYLPFIMEL 9 63 578.2914266037084 1154.5683002742167 2 578.2915649414062 MULTI HCD FTMS 0 0 0 22658 778556.3125 0.48937578222372835 6 -0.16382598876953125 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 166.44778350782605 5.759113011535275E-09 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 112.56 0 0 9.7495 9.7495 97.407 0 0 0 24.036961387196442 16.478174818886373 16.478174818886373 28.086130075101792 0 2.6549471895720984 1.3979400086720375 0 2.0431576817365436 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}P{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}MPY{I|L}[YN]{I|L};[VP]{[CP]|[EA]}[RD]P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PY{I|L}[YN]{I|L} 9.7495;7.3169;6.9738;5.5945;5.1812;4.3311;1.9732;1.7129;1.6762;1.3683 +;-;-;-;-;-;-;-;-;- + 546 NaN NaN 291523.6 NaN 18512 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22661 90.518 NaN 415230 35 0 46516 0.261 + 22402 QPSPILEFL 9 53 522.2926423766946 1042.5707318201892 2 522.292724609375 MULTI HCD FTMS 0 0 0 22658 146260.46875 0.5890041426805711 1 -0.0295562744140625 3 Unmodified _QPSPILEFL_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 43.85829265575387 0.04763305254408404 1 E{M(Oxidation (M))|F}{I|L} 3 6 41.555 0 0 3.9858 0 0 635.3645883864236 0 635.3645883864236 0 34.29892479403911 0 0 0 0.9247425010840047 0 0.7614393726401688 0 + E{M(Oxidation (M))|F}{I|L} 3.9858 + + 47 NaN NaN 154609.3 NaN 18513 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22662 90.521 NaN 575450 35 0 95987 0.261 + 4157 ETPLPLLPSIW 11 90 633.3587671598332 NaN 0 633.371337890625 PEAK HCD FTMS 0 0 0 22658 54288.5703125 1 0 0 4 Unmodified _ETPLPLLPSIW_ REV__ENST00000491251.1_1_22:30421752-30421800:+|nuORF 8.745405648335112 0.31731194618894887 1 A{I|L}{M(Oxidation (M))|F}{I|L}M 5 -1 15.918 0 0 1.2586 0 0 319.21550687650375 367.1970614068969 686.4125682834007 0 0 0 0 0 0 0 0 0 A{I|L}{M(Oxidation (M))|F}{I|L}M 1.2586 - 213 + NaN NaN 170069.5 NaN 18514 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22663 90.524 NaN 244670 35 0 32995 0.261 + -1 EMLVWEALGG 10 70 560.7701557434464 1119.5257585536926 2 560.768798828125 MULTI HCD FTMS 0 0 0 22658 107808.6328125 0.6282708246696384 3 -0.0819091796875 5 Oxidation (M) _EM(Oxidation (M))LVWEALGG_ REV__ENSG00000168802|ENST00000448552|CHTF8 25.399314129420986 0.2735354021946395 1 HEAN{I|L} 5 -1 48.5 0 0 4.3322 0 0 537.2554798810562 0 537.2554798810562 0 13.120834504790722 0 0 0 1.5 0 0.3807196863200844 0 HEAN{I|L} 4.3322 - 239 NaN NaN 116182.6 NaN 18515 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22664 90.528 NaN 167610 35 0 9110.9 0.264 + 22396 QPRPQRRQR 9 60 407.9063024768881 1220.6970780308643 3 407.90631103515625 MULTI HCD FTMS 0 0 0 22658 78125.21875 0.21380579492472646 16 -0.415771484375 6 Unmodified _QPRPQRRQR_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 0.8643753074506083 0.3444644448335434 1 [{M(Oxidation (M))|F}E]{I|L} 3 -1 10.458 0 0 0.85669 0 0 0 828.512909900258 828.512909900258 8.863781092484688 0 0 0 0 0 0 0.3494850021680094 0 [{M(Oxidation (M))|F}E]{I|L} 0.85669 - 6 NaN NaN 110467.2 NaN 18516 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22665 90.531 NaN 199790 35 0 29360 0.261 + 14328 LDPKNSDIL 9 60 507.77602303029494 1013.5374931273899 2 507.7770080566406 MULTI HCD FTMS 0 0 0 22658 68733.140625 0.8203484762671851 -4 0.1089935302734375 7 Unmodified _LDPKNSDIL_ ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;ITPR3|p.D722Efs*12|1|0.07|ENSG00000096433|chr6:33669133-33669133|C/-|frameshift_variant 17.11289562659939 0.2125047172822487 1 {I|L}D{I|L}{I|L} 4 5 36.855 0 0 3.6362 0 0 541.2485218732437 0 541.2485218732437 0 29.86494082808356 0 0 0 0.7302046884880937 0 0 0 {I|L}D{I|L}{I|L} 3.6362 - 83 NaN NaN 107917.8 NaN 18517 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22666 90.534 NaN 111290 35 0 11125 0.261 + 18478 MQFGRAFYM 9 46 575.760036091116 NaN 0 575.7608032226562 PEAK HCD FTMS 0 0 0 22658 28124.169921875 0.5525743587492294 -3 0.0819244384765625 8 Unmodified _MQFGRAFYM_ REV__ENSG00000165125|ENST00000359396|TRPV6;REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6 3.944395688203298 0.27613285122220627 1 Q{M(Oxidation (M))|F}W 3 -1 6.0308 0 0 0.52464 0 0 131.03267117594788 554.2530611627561 685.2857323387041 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}W 0.52464 - 12 + NaN NaN 96563.3 NaN 18518 4146 22658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22668 90.539 NaN 1448900 35 0 206030 0.327 + 32354 VYVLTNLAYF 10 87 601.8264220272304 1201.6382911212606 2 601.8265380859375 MULTI HCD FTMS 0 0 0 22667 1027781.6875 0.6207494469143467 2 -0.0523529052734375 1 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 157.7952019732125 1.3404113081044716E-08 1 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 0 + 133.68 0 0 11.125 11.125 92.116 0 0 0 24.25968732272281 99.10850666067282 24.25968732272281 6.025684359364405 0 3.305462187404089 1.6989700043360187 1.8411290632962718 1.1861818737241734 + + [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTGG{I|L}AY{M(Oxidation (M))|F};YVV{I|L}TN{I|L}AY{M(Oxidation (M))|F};{[TV]|[{I|L}S]}QA{I|L}NT{I|L}VP{M(Oxidation (M))|F};[KA]EA{I|L}NT{I|L}VP{M(Oxidation (M))|F};YVV{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}A{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}AY{M(Oxidation (M))|F};{[TV]|[{I|L}S]}QA{I|L}NTV{I|L}P{M(Oxidation (M))|F} 11.125;10.624;9.3752;8.8737;8.7936;7.8848;7.8291;7.8027;7.7118;7.3833 +;-;-;-;-;-;-;-;-;- + 2450 NaN NaN 302766.3 NaN 18519 4147 22667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22669 90.544 NaN 1879800 35 0 241470 0.261 -1 0 109 539.7751241686321 1077.5356954040642 2 539.7756958007812 MULTI HCD FTMS 0 0 0 22667 870259.125 0.026322480962716686 20 -0.5370254516601562 2 NaN NaN 1 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 86.511 0 0 8.0286 0 0 0 279.09614509614823 279.09614509614823 54.19908391338643 0 0 0 0 2.208170666312956 1.5228787452803376 0.6505149978319906 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.0286 - 4521 + NaN NaN 369759.4 NaN 18520 4147 22667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22670 90.547 NaN 1114100 35 0 216010 0.261 + -1 SGALDILSMK 10 60 525.7798867429146 1049.5452205526292 2 526.2972412109375 MULTI HCD FTMS 0 0 0 22667 16966.45703125 0.3154933471227789 1 -0.02285003662109375 3 Oxidation (M) _SGALDILSM(Oxidation (M))K_ REV__ENSG00000121621|ENST00000263181|KIF18A;REV__ENSG00000186185|ENST00000593135|KIF18B;REV__ENST00000533466.1_1_11:28098218-28119398:-|nuORF;REV__nc|ENSG00000186185|Q86Y91-6|KIF18B 27.628801355627647 0.2527626205058048 1 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 -1 56.23 0 0 5.3576 0 0 443.20614635081694 0 443.20614635081694 0 15.46765560293629 0 0 0 0.5 0 1.1989700043360187 0.5796896906561032 {I|L}{I|L}NT{M(Oxidation (M))|F} 5.3576 - 119 + NaN NaN 250353.9 NaN 18521 4147 22667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22671 90.551 NaN 899870 35 0 301030 0.261 + 26785 SYIALPLTL 9 51 495.7971330979099 989.5797132626199 2 495.7972106933594 MULTI HCD FTMS 0 0 0 22667 213139.828125 0.1551668396133311 -5 0.1385498046875 4 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 118.89474601620944 0.0014903111061077812 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L} 9 0 + 67.295 0 0 6.8004 6.8004 91.297 0 0 0 3.9846886320269306 3.9846886320269306 3.9846886320269306 13.298122174395033 0 2.41944517631652 0 0.7059771852360797 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}{I|L}P{I|L}T{I|L};[{I|L}T][YG]{I|L}P{I|L}T{I|L};[{I|L}T][{I|L}P][YG]{I|L}T{I|L} 6.8004;5.4566;4.3198;0.95503 +;-;-;- + 163 NaN NaN 219150.7 NaN 18522 4147 22667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22672 90.554 NaN 206260 35 0 31738 0.261 -1 FVDERKTMS 9 55 564.7706766616615 1127.5268003901228 2 564.7708740234375 MULTI HCD FTMS 0 0 0 22667 95949.9453125 0.718911968355118 2 -0.0523529052734375 5 Oxidation (M) _FVDERKTM(Oxidation (M))S_ ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L 10.073929032068715 0.27331982688540024 1 E{I|L}WDD{I|L} 6 -1 53.404 0 0 4.7364 0 0 338.15608412910314 0 338.15608412910314 0 40.47228775315752 0 0 0 1.6237125054200234 0 0 0 E{I|L}WDD{I|L} 4.7364 - 226 NaN NaN 116503.9 NaN 18523 4147 22667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22673 90.557 NaN 114920 35 0 14105 0.262 + 31265 VVYGLTAIL 9 51 474.7918576533077 947.5691623734155 2 474.79205322265625 MULTI HCD FTMS 0 0 0 22667 20427.828125 0.47879596848228645 1 -0.02285003662109375 6 Unmodified _VVYGLTAIL_ ENSG00000167332|ENST00000396950|OR51E2 21.74664581756881 0.17247014374749275 1 [YV]VG{I|L}T[{I|L}A]{I|L} 9 2 + 34.371 0 0 3.6273 3.6273 85.263 0 0 0 4.616356081644646 26.923487412610363 4.616356081644646 9.731975075880332 0 1.1237125054200234 0 0 0 [YV]VG{I|L}T[{I|L}A]{I|L};[YV]{I|L}[VG]T[{I|L}A]{I|L};[Y{I|L}]V[VG]T[{I|L}A]{I|L} 3.6273;2.6002;2.1803 -;-;- 174 NaN NaN 92206.8 NaN 18524 4147 22667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22675 90.562 NaN 2488000 35 0 277590 0.326 + 29168 TYIQILESF 9 102 557.2952264695142 1112.5759000058283 2 557.2954711914062 MULTI HCD FTMS 0 0 0 22674 727933.5625 0.5307132292163155 2 -0.05237579345703125 1 Unmodified _TYIQILESF_ ENSG00000187790|ENST00000267430|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM 160.6895995991744 8.89223804155775E-09 1 [YT]{I|L}Q{I|L}{I|L}ES{M(Oxidation (M))|F} 9 0 + 108.74 0 0 9.7736 9.7736 94.826 0 0 0 1.4526290265086175 1.4526290265086175 1.4526290265086175 10.779550148593486 0 3.0994850021680094 1.5228787452803376 1.4604093769761874 0.6307196863200843 + + [YT]{I|L}Q{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}{I|L}Q{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}[AG]{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}VAA{I|L}ES{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}{I|L}[AG]{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}AAV{I|L}ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[SA]|[TG]}{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}{I|L}{I|L}QES{M(Oxidation (M))|F};[Q{I|L}][YT]{I|L}{I|L}ES{M(Oxidation (M))|F} 9.7736;8.8047;8.5559;7.7267;7.5891;7.4102;7.3275;6.9418;6.9091;6.3464 +;-;-;-;-;-;-;-;-;- + 2308 NaN NaN 478142.9 NaN 18525 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22676 90.567 NaN 533200 35 0 21365 0.261 -1 0 99 619.8697049488608 1237.7248569645215 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22674 632268.75 0.284967256779659 17 -0.451873779296875 2 NaN NaN 1 D 1 -1 10.529 0 0 0.85066 0 0 105.08027784159852 1014.5682112535787 1119.6484890951772 0 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 D 0.85066 - 251 + NaN NaN 162466.2 NaN 18526 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22677 90.57 NaN 439040 35 0 73953 0.261 + -1 LWRDCPFT 8 60 547.7577226917114 1093.5008924502226 2 547.7576904296875 MULTI HCD FTMS 0 0 0 22674 109399.4453125 0.017330547543921042 21 -0.5731887817382812 3 Carbamidomethyl (C) _LWRDC(Carbamidomethyl (C))PFT_ REV__ENSG00000167210|ENST00000642948|LOXHD1;REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF;REV__nc|ENSG00000167210|Q8IVV2-3|LOXHD1;REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 8.593279151180031 0.5292430274356741 1 [YT]VA 4 -1 19.922 0 0 1.8218 0 0 0 656.2614875032101 656.2614875032101 8.239087409443187 0 0 0 0 0 0 1 0 [YT]VA 1.8218 - 34 NaN NaN 149176.6 NaN 18527 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22678 90.574 NaN 331200 35 0 61017 0.261 + 7865 FYTFPFQQL 9 64 595.797926759519 1189.5813005858379 2 595.7976684570312 MULTI HCD FTMS 0 0 0 22674 132004.453125 0.030387006476702873 18 -0.4912872314453125 4 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 96.11092074494114 0.00436583732602279 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 69.46 0 0 5.839 5.839 87.699 0 0 0 3.65279269351241 29.18407877177387 3.65279269351241 9.208187539523749 0 2.024227503252014 0 1.305462187404089 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]WWQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[PS][KG];[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P[PS]{M(Oxidation (M))|F}[KG];{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}{M(Oxidation (M))|F}[KG] 5.839;5.065;5.065;4.2946;3.0851;2.3913;2.1179;0.47614;0.025271 +;-;-;-;-;-;-;-;- + 632 NaN NaN 136656.3 NaN 18528 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22679 90.577 NaN 449950 35 0 79213 0.261 -1 0 79 633.3692585006554 1264.7239640681107 2 633.3714599609375 MULTI HCD FTMS 0 0 0 22674 222058.234375 0.06968912658487456 -25 0.6126327514648438 5 NaN NaN 1 {[TV]|[{I|L}S]}AVM{I|L}{M(Oxidation (M))|F}{I|L} 8 -1 22.975 0 0 1.8166 0 0 0 387.243043007817 387.243043007817 14.828153892435266 0 0 0 0 0.3252574989159953 0 0.805462187404089 0 {[TV]|[{I|L}S]}AVM{I|L}{M(Oxidation (M))|F}{I|L} 1.8166 - 162 NaN NaN 148837 NaN 18529 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22680 90.58 NaN 419100 35 0 57630 0.263 -1 0 62 506.78855268034863 1011.5625524274973 2 506.7893981933594 MULTI HCD FTMS 0 0 0 22674 55930.65234375 0.20030154949419346 -4 0.1081390380859375 6 NaN NaN 1 {I|L}AMT{I|L} 5 -1 47.039 0 0 4.6501 0 0 464.260946855105 0 464.260946855105 0 21.066147098514705 0 0 0 1.6861818737241734 0 0 0 {I|L}AMT{I|L} 4.6501 - 189 NaN NaN 148670.6 NaN 18530 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22681 90.584 NaN 206080 35 0 30682 0.261 + 313 AFSPVLLQF 9 58 511.2896009885518 1020.5646490439036 2 511.28936767578125 MULTI HCD FTMS 0 0 0 22674 49188.4921875 0.5350627738519009 -2 0.05240631103515625 7 Unmodified _AFSPVLLQF_ ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B 53.832793166522166 0.026208976789938845 1 {I|L}{I|L}Q{M(Oxidation (M))|F} 4 5 52.735 0 0 5.1672 0 0 501.25911930232365 0 501.25911930232365 0 45.43305028184122 0 0 0 1.4247425010840047 0 0 0.6549471895720985 + {I|L}{I|L}Q{M(Oxidation (M))|F} 5.1672 + + 102 + NaN NaN 108110.4 NaN 18531 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22682 90.587 NaN 91263 35 0 11668 0.261 + 15858 LPLCMHPYL 9 47 543.7773802186956 1085.5402075041911 2 543.7778930664062 MULTI HCD FTMS 0 0 0 22674 28226.775390625 0.7966118016277393 2 -0.05237579345703125 8 Unmodified _LPLCMHPYL_ ENST00000573130.2_1_16:3104061-3104997:-|nuORF 9.347437153973935 0.2795965555214564 1 {I|L}P{M(Oxidation (M))|F}[HA]E{M(Oxidation (M))|F} 7 5 28.008 0 0 2.5801 0 0 0 241.1552675836547 241.1552675836547 19.02835415434268 0 0 0 0 0.3807196863200844 0 0 0 {I|L}P{M(Oxidation (M))|F}[HA]E{M(Oxidation (M))|F} 2.5801 - 23 + NaN NaN 108441.1 NaN 18532 4148 22674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22684 90.592 NaN 885150 35 0 201180 0.327 + 22998 RAGNCFLETHD 11 73 631.7828846331324 1261.5512163330648 2 631.782958984375 MULTI HCD FTMS 0 0 0 22683 506827.09375 0.6153201970667622 4 -0.104766845703125 1 Unmodified _RAGNCFLETHD_ ENSG00000142449|ENST00000600128|FBN3 8.155526934196011 0.3831532958467648 1 S{I|L}{I|L}{M(Oxidation (M))|F}EQPE 8 9 56.776 0 0 4.5005 0 0 300.06001479316564 0 300.06001479316564 0 42.61947817248647 0 0 0 2.1237125054200234 0 0.8807196863200843 0.4247425010840047 S{I|L}{I|L}{M(Oxidation (M))|F}EQPE 4.5005 - 197 NaN NaN 237122.4 NaN 18533 4149 22683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22685 90.596 NaN 395700 35 0 112020 0.261 + 33221 YFEELITML 9 57 587.7887125399347 1173.5628721466694 2 587.7890014648438 MULTI HCD FTMS 0 0 0 22683 162648.4375 0.4957903897585456 -10 0.27271270751953125 2 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 41.8396318013385 0.056899836730939755 1 {I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 5 4 48.232 0 0 4.1099 0 0 568.2153797834 0 568.2153797834 0 26.549471895720984 0 0 0 1.805462187404089 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 4.1099 + + 424 NaN NaN 151766.1 NaN 18534 4149 22683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22686 90.6 NaN 140390 35 0 23041 0.261 + 4579 EYLPIGGLAEF 11 46 604.8136346654404 1207.6127163976807 2 604.8136596679688 MULTI HCD FTMS 0 0 0 22683 83439.8125 0.1207309782311349 9 -0.2323455810546875 3 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 45.739877483867886 0.09998344372470726 1 [YE]{I|L}[{I|L}P]GG{I|L}AE{M(Oxidation (M))|F} 11 0 + 85.265 0 0 7.0606 7.0606 87.991 0 0 0 26.403569968258395 79.7807075759896 26.403569968258395 6.575773191777927 0 1.4247425010840047 1.5228787452803376 0.3807196863200844 0 + + [YE]{I|L}[{I|L}P]GG{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}[{I|L}P]N{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}[{I|L}P]G[Q{I|L}]E{M(Oxidation (M))|F} 7.0606;6.5161;4.6962 +;-;- + 73 NaN NaN 105658.2 NaN 18535 4149 22683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22687 90.603 NaN 340580 35 0 60397 0.261 + 11319 IYLVSIPEL 9 65 523.8105348036037 1045.6065166740073 2 523.8106079101562 MULTI HCD FTMS 0 0 0 22683 118815.7734375 0.7840633613800455 -3 0.0819091796875 4 Unmodified _IYLVSIPEL_ ENSG00000185344|ENST00000330342|ATP6V0A2 54.773552608820026 0.024892918755467567 1 [Y{I|L}]{I|L}VS{I|L}[EP]{I|L} 9 0 + 47.171 0 0 4.5113 4.5113 87.71 0 0 0 3.65279269351241 31.051434250963936 3.65279269351241 14.996593117612768 0 1.7059771852360797 0 0.4247425010840047 0 + + [Y{I|L}]{I|L}VS{I|L}[EP]{I|L};[YT]V[{I|L}V]{I|L}[EP]{I|L};[Y{I|L}]S[{I|L}V]{I|L}[EP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}V]{I|L}[EP]{I|L} 4.5113;3.0771;1.7604;1.5652 +;-;-;- + 149 NaN NaN 141594.7 NaN 18536 4149 22683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22688 90.606 NaN 136030 35 0 23740 0.261 + -1 APLVPKPKGKC 11 46 597.8562492717579 1193.6979456103156 2 597.856201171875 MULTI HCD FTMS 0 0 0 22683 26012.921875 0.256024151507001 11 -0.28142547607421875 5 Carbamidomethyl (C) _APLVPKPKGKC(Carbamidomethyl (C))_ REV__ENST00000267811.9_1_15:57211003-57212096:+|nuORF;REV__ENST00000438423.6_1_15:57210991-57212112:+|nuORF 1.1933415558491238 0.4136870758253112 1 EY 2 -1 7.9588 0 0 0.66673 0 0 132.21706289722812 766.3457125299436 898.5627754271718 0 0 0 0 0 0 0 0 0 EY 0.66673 - 7 + NaN NaN 103923.2 NaN 18537 4149 22683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22689 90.61 NaN 96098 35 0 6695.1 0.264 -1 0 52 437.2571673314201 1308.7496725944602 3 437.2577819824219 MULTI HCD FTMS 0 0 0 22683 64258.11328125 0.31458335436920387 -20 0.4797515869140625 6 NaN NaN 1 V 1 -1 0.9691 0 0 0.074048 0 0 806.4525057016853 400.2019442193969 1206.6544499210822 0 0 0 0 0 0 0 0 0 V 0.074048 - 2 + NaN NaN 96222.7 NaN 18538 4149 22683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22691 90.615 NaN 5962900 35 0 1074500 0.327 + 27627 TAISLFYEL 9 99 528.7842518804308 1055.5539508276615 2 528.7845458984375 MULTI HCD FTMS 0 0 0 22690 2878009.75 0.02136475633926845 23 -0.6384429931640625 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 188.57702930522862 4.893362302778831E-13 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 109.85 0 0 10.407 10.407 98.52 0 0 0 13.948565749036064 13.948565749036064 13.948565749036064 40.34440644703906 0 2.6549471895720984 1.5228787452803376 1.947621246364342 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}S{I|L}[YE]{M(Oxidation (M))|F}{I|L};[TA]{I|L}Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L};[TA]{I|L}S{I|L}[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}{I|L}S[TA]{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L} 10.407;6.5846;6.2185;5.8957;4.7219;4.3846;4.164;4.0615;3.2313;3.2313 +;-;-;-;-;-;-;-;-;- + 1873 NaN NaN 868453.9 NaN 18539 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22692 90.619 NaN 1977100 35 0 775370 0.263 -1 0 48 405.11870980179765 808.2228666703953 2 405.1190185546875 MULTI HCD FTMS 0 0 0 22690 952479.75 0.916619807191781 1 -0.02956390380859375 2 NaN NaN 1 [C(Carbamidomethyl (C))M][HS]H 5 -1 8.7101 0 0 1.0777 0 0 0 152.96997295385157 152.96997295385157 5.215299873086606 0 0 0 0 0.8252574989159953 0 0 0 [C(Carbamidomethyl (C))M][HS]H 1.0777 - 11 NaN NaN 381299.2 NaN 18540 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22693 90.623 NaN 1038900 35 0 137260 0.261 + -1 SYIMRNPF 8 77 522.2529356621841 1042.491318391168 2 522.2529907226562 MULTI HCD FTMS 0 0 0 22690 181858.296875 0.7061859929826333 -3 0.075225830078125 3 Oxidation (M) _SYIM(Oxidation (M))RNPF_ REV__ENST00000332981.9_1_14:62016967-62017273:+|nuORF 13.50788311687929 0.4944073034352369 1 A{I|L}YG{M(Oxidation (M))|F} 5 -1 30.433 0 0 2.9193 0 0 473.2071706602297 0 473.2071706602297 0 13.979400086720375 0 0 0 0 0 0 0 A{I|L}YG{M(Oxidation (M))|F} 2.9193 - 256 + NaN NaN 248768 NaN 18541 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22694 90.626 NaN 400920 35 0 54648 0.261 + 35236 YVNLFYVF 8 55 532.7746195170099 1063.5346861008197 2 532.7864990234375 MULTI HCD FTMS 0 0 0 22690 48596.3828125 0.6828271684625585 -3 0.075225830078125 4 Unmodified _YVNLFYVF_ REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF 14.581692164780916 0.48650662947107914 1 [YV]ED 4 -1 38.188 0 0 3.5906 0 0 0 554.2973361175815 554.2973361175815 19.336068845642203 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]ED 3.5906 - 44 + NaN NaN 148008.9 NaN 18542 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22695 90.629 NaN 642190 35 0 67426 0.261 + 25785 SLKVDPRACF 10 90 568.3000674274277 1134.5855819216554 2 567.7784423828125 MULTI HCD FTMS 0 0 0 22690 15835.296875 0.32986124192492805 7 -0.1799163818359375 5 Unmodified _SLKVDPRACF_ ENSG00000105401|ENST00000222005|CDC37;ENST00000519230.1_1_5:157413535-157414072:-|nuORF 9.38312468134398 0.42334543440173333 1 {[TV]|[{I|L}S]}{M(Oxidation (M))|F} 3 7 27.447 0 0 2.4191 0 0 0 784.378922335971 784.378922335971 -2.065629270416025 0 -2.065629270416025 0 0 0 1.6989700043360187 0 0 {[TV]|[{I|L}S]}{M(Oxidation (M))|F} 2.4191 - 585 NaN NaN 177623 NaN 18543 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22696 90.633 NaN 551340 35 0 207700 0.261 + 16489 LTATYAFEL 9 66 514.7701176855594 1027.5256824379187 2 514.7700805664062 MULTI HCD FTMS 0 0 0 22690 123087.0546875 0.7636441689911031 -2 0.05237579345703125 6 Unmodified _LTATYAFEL_ REV__ENSG00000160685|ENST00000535420|ZBTB7B;REV__nc|ENSG00000160685|O15156-2|ZBTB7B 20.453626601364224 0.18364154288633264 1 TRE{M(Oxidation (M))|F}E{I|L} 6 -1 33.454 0 0 3.2557 0 0 234.1361561505875 0 234.1361561505875 0 15.354575339208623 0 0 0 0.5 0 0.3494850021680094 0 TRE{M(Oxidation (M))|F}E{I|L} 3.2557 - 184 NaN NaN 151910.8 NaN 18544 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22697 90.636 NaN 251690 35 0 57928 0.261 -1 0 72 641.8824831880886 1281.750413442977 2 641.8821411132812 MULTI HCD FTMS 0 0 0 22690 136179.046875 0.06984169888377767 -28 0.6940155029296875 7 NaN NaN 1 {I|L}{I|L}QDNY 6 -1 19.391 0 0 1.5128 0 0 204.20049693156176 328.16620813541255 532.3667050669743 0 0 0 0 0 0 0 0 0.3807196863200844 {I|L}{I|L}QDNY 1.5128 - 281 + NaN NaN 125039.2 NaN 18545 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22698 90.639 NaN 71790 35 0 14011 0.264 + 32421 WAGRCCPL 8 36 453.2098832645362 NaN 0 453.20989990234375 PEAK HCD FTMS 0 0 0 22690 17240.056640625 0.35075835238277725 12 -0.3109893798828125 8 Unmodified _WAGRCCPL_ ENST00000354755.5_1_11:86085825-86086272:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101238.3 NaN 18546 4150 22690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22700 90.644 NaN 912290 35 0 45690 0.327 -1 0 87 611.3564525007829 1220.6983520683657 2 611.3563842773438 MULTI HCD FTMS 0 0 0 22699 1010605.5 0.29619552315183617 38 -1.0190200805664062 1 NaN NaN 1 {[HG]|PP}N 3 -1 9.7936 0 0 0.8023 0 0 0 909.4912203515781 909.4912203515781 0.05075666186249883 0 0 0 0 0.6861818737241735 0 0 0 {[HG]|PP}N 0.8023 - 171 + NaN NaN 221771.3 NaN 18547 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22701 90.649 NaN 969280 35 0 156280 0.262 + 31983 VYPLALYGF 9 58 521.7837138486642 1041.5528747641283 2 521.7842407226562 MULTI HCD FTMS 0 0 0 22699 232915 0.9625768245443865 -1 0.02956390380859375 2 Unmodified _VYPLALYGF_ ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1 45.7499826716795 0.03894913563566938 1 A{I|L}YG{M(Oxidation (M))|F} 5 4 43.003 0 0 4.1288 0 0 472.2685252541658 0 472.2685252541658 0 38.3103844862778 0 0 0 1.6549471895720984 0 0 0 + A{I|L}YG{M(Oxidation (M))|F} 4.1288 + + 135 + NaN NaN 226121.6 NaN 18548 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22702 90.652 NaN 983460 35 0 43618 0.261 + 4219 EVARMDNPDTF 11 91 647.7905871638383 1293.5666213944764 2 647.7905883789062 MULTI HCD FTMS 0 0 0 22699 233300.453125 0.6898453967952412 -1 0.02956390380859375 3 Unmodified _EVARMDNPDTF_ CON__P01044-1;CON__P01045-1;CON__Q2KJ62 31.26834338654808 0.19318467762437158 1 {M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4 8 49.24 0 0 3.8065 0 0 767.288234736385 0 767.288234736385 0 21.350978289898347 0 0 0 1.3494850021680094 0 0.3807196863200844 0 {M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 3.8065 - 235 NaN NaN 234355.1 NaN 18549 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22703 90.655 NaN 117170 35 0 12029 0.262 + 34553 YPLAFGVPAAL 11 37 559.8159018577571 NaN 0 559.816162109375 PEAK HCD FTMS 0 0 0 22699 25511.060546875 0.4083162301042299 1 -0.02947998046875 4 Unmodified _YPLAFGVPAAL_ ENSG00000088386|ENST00000376503|SLC15A1 10.823927491677226 0.3114157783022309 1 V 1 10 15.485 0 0 1.3855 0 0 370.22163903791267 645.3019503229124 1015.5235893608251 0 0 0 0 0 0.8494850021680094 0 0 0 + V 1.3855 + + 7 + NaN NaN 98418.1 NaN 18550 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22704 90.659 NaN 123200 35 0 11098 0.261 -1 0 52 622.3475010661663 621.3402245995662 1 622.3472290039062 MULTI HCD FTMS 0 0 0 22699 63844.49609375 0.1516071074629526 23 -0.643463134765625 5 NaN NaN 1 [YN]{I|L} 3 -1 20.915 0 0 3.3661 0 0 0 228.12621027755372 228.12621027755372 13.467874862246559 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L} 3.3661 - 20 NaN NaN 106266.3 NaN 18551 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22705 90.662 NaN 220220 35 0 89295 0.261 -1 LAHFQCQMD 9 34 583.2426657112812 1164.4707784893624 2 583.2423095703125 MULTI HCD FTMS 0 0 0 22699 45922.08984375 0.6496024160057396 -1 0.02956390380859375 6 Carbamidomethyl (C),Oxidation (M) _LAHFQC(Carbamidomethyl (C))QM(Oxidation (M))D_ ENSG00000175518|ENST00000380184|UBQLNL;nc|ENSG00000175518|Q8IYU4-2|UBQLNL 0.6014990680409731 0.3464572424761564 1 V 1 -1 5.4846 0 0 0.47099 0 0 423.8405427489311 638.5243624322874 1062.3649051812185 0 0 0 0 0 0 0 0 0 V 0.47099 - 4 + NaN NaN 116145.3 NaN 18552 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22706 90.665 NaN 178180 35 0 13486 0.261 + 220 AEWEALMISL 10 52 581.793934460763 1161.573315988326 2 581.7939453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _AEWEALMISL_ REV__ENSG00000129197|ENST00000381209|RPAIN;REV__ENST00000571043.5_1_17:5323428-5329403:+|nuORF;REV__nc|ENSG00000129197|Q86UA6-2|RPAIN;REV__nc|ENSG00000129197|Q86UA6-3|RPAIN;REV__nc|ENSG00000129197|Q86UA6-4|RPAIN;REV__nc|ENSG00000129197|Q86UA6-8|RPAIN;REV__nc|ENSG00000129197|Q86UA6-9|RPAIN 20.41453444215458 0.3201613495159799 1 {[CP]|[EA]}WET[{I|L}T]{I|L}S{I|L} 10 -1 + 48.249 0 0 4.1538 4.1538 89.682 0 0 0 7.269987279362624 23.56878100893148 7.269987279362624 48.249256301612746 0 0.7614393726401688 0 0 0 {[CP]|[EA]}WET[{I|L}T]{I|L}S{I|L} 4.1538 - 154 NaN NaN 114540.7 NaN 18553 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22707 90.669 NaN 153180 35 0 20239 0.261 + 17680 MAFRKISLKT 10 60 597.8562492717579 1193.6979456103156 2 597.856689453125 MULTI HCD FTMS 0 0 0 22699 31926.88671875 0.31423052441809196 13 -0.34709930419921875 8 Unmodified _MAFRKISLKT_ ENSG00000164603|ENST00000297145|BMT2 1.3295316138638542 0.46826628246186464 1 M 1 9 8.0989 0 0 0.67848 0 0 633.3344892421529 426.3011873834594 1059.6356766256124 0 0 0 0 0 0.5 0 0 0 + M 0.67848 + + 17 + NaN NaN 111786.6 NaN 18554 4151 22699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22709 90.674 NaN 1767000 35 0 231290 0.327 + 28837 TVFPYEPFL 9 103 556.7869133059021 NaN 0 556.7869873046875 PEAK HCD FTMS 0 0 0 22708 498334.1875 0.8239288151524383 2 -0.04894256591796875 1 Unmodified _TVFPYEPFL_ ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C;UBE3C-PTPRN2|1|fusion 96.28474662873226 4.6490394427347504E-05 1 SE{I|L}{I|L}[RP]S 7 8 38.25 0 0 3.4411 0 0 164.06404770379783 162.05605493717033 326.1201026409682 0 0 0 0 0 0.25 0 1.6479400086720375 0.555462187404089 SE{I|L}{I|L}[RP]S 3.4411 - 1031 + NaN NaN 354375.1 NaN 18555 4152 22708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22710 90.678 NaN 622040 35 0 70067 0.261 -1 0 102 633.3692585006554 1264.7239640681107 2 633.36962890625 MULTI HCD FTMS 0 0 0 22708 366407.46875 0.11499063091819747 -21 0.522979736328125 2 NaN NaN 1 {I|L}{M(Oxidation (M))|F}{I|L}M 4 -1 20.054 0 0 1.5857 0 0 390.2660305737732 367.19626794986567 757.4622985236389 0 0 0 0 0 0.28872548999643577 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}M 1.5857 - 343 + NaN NaN 181492.8 NaN 18556 4152 22708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22711 90.682 NaN 604910 35 0 89659 0.261 + 10982 IYEEFLAAF 9 54 551.7767961754525 1101.539039417705 2 551.776611328125 MULTI HCD FTMS 0 0 0 22708 327291.65625 1 0 0 3 Unmodified _IYEEFLAAF_ ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP 85.35673624503755 0.00464763827098139 1 [Y{I|L}]EE{M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 9 0 + 79.843 0 0 7.2483 7.2483 95.151 0 0 0 3.65279269351241 69.35850004969453 3.65279269351241 52.1669877129645 0 2.9247425010840047 0 0.7742275032520141 0 + + [Y{I|L}]EE{M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F};[HV]A{I|L}[WQ][WY] 7.2483;2.5125 +;- + 206 NaN NaN 178570.2 NaN 18557 4152 22708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22712 90.685 NaN 679750 35 0 116300 0.261 + 29937 VFFEVSPVSF 10 74 579.2966595453496 1156.578766157499 2 579.29736328125 MULTI HCD FTMS 0 0 0 22708 245689.203125 0.924212241483629 -3 0.08191680908203125 4 Unmodified _VFFEVSPVSF_ ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1 60.07390631473393 0.04115296186411585 1 GSV[RN]S{M(Oxidation (M))|F} 7 7 56.815 0 0 4.9123 0 0 391.19916563634166 0 391.19916563634166 0 42.39023842381954 0 0 0 2.3807196863200843 0 0.7302046884880937 0 GSV[RN]S{M(Oxidation (M))|F} 4.9123 - 867 + NaN NaN 192227.3 NaN 18558 4152 22708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22713 90.688 NaN 533570 35 0 48933 0.261 + 19788 NYAWVYYHL 9 75 614.7935413642169 1227.5725297952338 2 614.7933349609375 MULTI HCD FTMS 0 0 0 22708 80677.8203125 0.6625329734387867 14 -0.3798675537109375 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 45.69961567697781 0.039180348357221985 1 [YN]AW[W{M(Oxidation (M))|F}]QT{I|L} 9 4 + 42.386 0 0 3.4528 3.4528 80.807 0 0 0 20.461434083857526 0.3164542164133053 0.3164542164133053 3.137204191566042 0 1.6237125054200234 1.3010299956639813 0.3807196863200844 0 [YN]AW[W{M(Oxidation (M))|F}]QT{I|L};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AW[W{M(Oxidation (M))|F}][AG]T{I|L};[YN]A[{M(Oxidation (M))|F}V]V[MT]{[{M(Oxidation (M))|F}H]|[RQ]};[Y{I|L}][QP]{[QN]|[E{I|L}]|[KN]}R[Y{M(Oxidation (M))|F}] 3.4528;3.1973;2.8513;2.7027;1.6985;0.45924 -;-;-;-;-;- 440 + NaN NaN 160267 NaN 18559 4152 22708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22714 90.692 NaN 194550 35 0 60628 0.261 -1 IEETEIVMPTP 11 35 637.8117065429688 NaN 0 637.8117065429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _IEETEIVM(Oxidation (M))PTP_ ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-2|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1 5.296884461304476 0.3270944076746277 1 EAWET 5 -1 27.519 0 0 2.1607 0 0 113.0943466977579 541.2421015424087 654.3364482401666 0 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 EAWET 2.1607 - 36 + NaN NaN 120296.5 NaN 18560 4152 22708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22716 90.696 NaN 2619600 35 0 886110 0.326 + 26786 SYIALPLTL 9 58 495.7971330979099 989.5797132626199 2 495.79730224609375 MULTI HCD FTMS 0 0 0 22715 1212481.625 0.882692566169048 1 -0.026092529296875 1 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 144.35026110057638 1.4798765981150827E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L} 9 0 + 86.309 0 0 8.7218 8.7218 96.596 0 0 0 14.889917747712644 59.47621246364342 14.889917747712644 31.576447055154517 0 2.447621246364342 0 1.1989700043360187 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}{I|L}P{I|L}T{I|L};[{I|L}T][YG]{I|L}P{I|L}T{I|L};[{I|L}T]P{I|L}[YG]{I|L}T{I|L};[{I|L}P]T{I|L}[YG]{I|L}T{I|L};[{I|L}T]P{I|L}{I|L}[YG]T{I|L};[{I|L}P]T{I|L}{I|L}[YG]T{I|L};[{I|L}T]P{I|L}{I|L}A{I|L}{[{M(Oxidation (M))|F}C]|[YS]};[{I|L}P]T{I|L}{I|L}A{I|L}{[{M(Oxidation (M))|F}C]|[YS]} 8.7218;5.5309;5.5309;3.1984;2.9742;2.5095;2.2853;1.3913;1.1672 +;-;-;-;-;-;-;-;- + 329 NaN NaN 484379.4 NaN 18561 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22717 90.701 NaN 1029300 35 0 199560 0.261 + 15178 LMSLIINTF 9 67 526.2967101904258 1050.5788674476514 2 526.2967529296875 MULTI HCD FTMS 0 0 0 22715 545026.3125 0.5676371078489031 3 -0.081756591796875 2 Unmodified _LMSLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 152.88595553498965 5.775426743015152E-06 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} + + 90.782 19.833 8.1242 8.6411 8.6411 67.795 0 0 0 0 55.42996407556088 0 0 0 2.9049471895720984 0 1.9802046884880937 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 8.6411 + + 326 + NaN NaN 235227.7 NaN 18562 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22718 90.704 NaN 809120 35 0 103140 0.261 -1 0 85 539.7751241686321 1077.5356954040642 2 539.7755126953125 MULTI HCD FTMS 0 0 0 22715 394342 0.011927550645101967 26 -0.7286376953125 3 NaN NaN 1 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 87.229 0 0 8.0953 0 0 0 279.09577356510005 279.09577356510005 50.51493210686104 0 0 0 0 2.3494850021680094 1.3979400086720375 0.7059771852360797 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.0953 - 1388 + NaN NaN 214881.4 NaN 18563 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22719 90.708 NaN 377740 35 0 47054 0.261 + 32355 VYVLTNLAYF 10 67 601.8264220272304 1201.6382911212606 2 601.826416015625 MULTI HCD FTMS 0 0 0 22715 160538.828125 0.09696065806472265 8 -0.2028350830078125 4 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 142.0795815696625 3.9736287154477415E-07 1 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 0 + 114.74 0 0 9.549 9.549 96.587 0 0 0 19.744237387763093 101.26659484672177 19.744237387763093 20.71401138122023 0 2.774227503252014 1.3979400086720375 1.537860356969059 1.1549471895720984 + + [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TA[VG]AY{M(Oxidation (M))|F};[YV]VVVS[VG]AY{M(Oxidation (M))|F};[YV][{I|L}A]{I|L}S[VG]AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]{I|L}S[VG]AY{M(Oxidation (M))|F} 9.549;7.8252;6.6252;3.8685;3.3754;3.3328 +;-;-;-;-;- + 1039 NaN NaN 154660.2 NaN 18564 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22720 90.711 NaN 509300 35 0 96487 0.261 + 281 AFLYNDQLIW 10 103 641.8272632552458 1281.6399735772916 2 641.8273315429688 MULTI HCD FTMS 0 0 0 22715 181066.03125 0.9996746893568037 1 -0.026092529296875 5 Unmodified _AFLYNDQLIW_ ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF 65.47368725323818 0.022948616544343086 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}YNDQ{I|L}{I|L}W 10 0 + 55.534 0 0 4.333 4.333 84.516 0 0 0 3.5122958882415105 38.80709187257294 3.5122958882415105 9.164539485499262 0 2.6016784832448856 0 0.2614393726401688 0.6382104921644451 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}YNDQ{I|L}{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}YND[AG]{I|L}{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}YE{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}WAKW;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}G[WY]Q{I|L}{I|L}{[DA]|[EG]};{[MS]|[{M(Oxidation (M))|F}A]}[KG]W{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}QD[YQ]{I|L}W;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}VQD[YQ]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}KAW{[{M(Oxidation (M))|F}D]|MM}{I|L}W{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}YNDQ{I|L}W{I|L} 4.333;3.618;3.5648;3.5568;3.0626;2.9791;2.9648;2.8837;2.7656;2.7616 +;-;-;-;-;-;-;-;-;- + 1685 NaN NaN 164028.5 NaN 18565 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22721 90.714 NaN 290630 35 0 25086 0.261 -1 NLDCIRMIW 9 65 590.2872841434292 1178.5600153536584 2 591.2796020507812 MULTI HCD FTMS 0 0 0 22715 32394.703125 0.5422936801901947 -8 0.212860107421875 6 Oxidation (M) _NLDCIRM(Oxidation (M))IW_ ENSG00000188868|ENST00000293725|ZNF563;nc|ENSG00000188868|Q8TA94-2|ZNF563;ZNF563|p.R181Sfs*11|1|0.23|ENSG00000188868|chr19:12319474-12319484|AGGTTTCTACG/-|frameshift_variant 10.823927491677226 0.26684000660059787 1 [YN]{I|L}{I|L}D{M(Oxidation (M))|F}W 7 -1 50.411 0 0 4.2773 0 0 0 224.1023486878959 224.1023486878959 21.694699959806982 0 0 0 0 0 1.5228787452803376 0.4247425010840047 0.6989700043360187 [YN]{I|L}{I|L}D{M(Oxidation (M))|F}W 4.2773 - 815 NaN NaN 131311.8 NaN 18566 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22722 90.718 NaN 110760 35 0 8423 0.261 + 35119 YVEDTSVYI 9 53 544.7608360629164 1087.5071191926327 2 544.7601928710938 MULTI HCD FTMS 0 0 0 22715 24018.384765625 0.38267196196921727 -14 0.37747955322265625 7 Unmodified _YVEDTSVYI_ REV__ENSG00000088451|ENST00000261296|TGDS 7.289230182591677 0.29575926068275815 1 AY{I|L} 3 -1 31.198 0 0 2.8688 0 0 722.327928611525 0 722.327928611525 0 5.280287236002437 0 0 0 0.5 0 0 0 AY{I|L} 2.8688 - 46 NaN NaN 106220 NaN 18567 4153 22715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22724 90.723 NaN 292660 35 0 12019 0.327 -1 0 90 619.8697049488608 1237.7248569645215 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22723 330453.875 0.14893751154229645 23 -0.6467971801757812 1 NaN NaN 1 [Y{I|L}][KS]VQ[RV]A 9 -1 12.958 0 0 1.0469 0 0 0 190.10848426226417 190.10848426226417 3.94788097190564 0 0 0 0 0.5114393726401688 1.2218487496163564 0.3807196863200844 0.4247425010840047 [Y{I|L}][KS]VQ[RV]A 1.0469 - 390 NaN NaN 125775.4 NaN 18568 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22725 90.727 NaN 647490 35 0 91346 0.262 -1 0 63 506.78855268034863 1011.5625524274973 2 506.7884826660156 MULTI HCD FTMS 0 0 0 22723 213464.625 0.7644698096297974 2 -0.0556640625 2 NaN NaN 1 {I|L}AMT{I|L} 5 -1 44.781 0 0 4.427 0 0 464.2607257057878 0 464.2607257057878 0 27.347594070116013 0 0 0 1.7614393726401687 0 0 0 {I|L}AMT{I|L} 4.427 - 103 NaN NaN 183020.3 NaN 18569 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22726 90.731 NaN 275220 35 0 48307 0.261 + 7866 FYTFPFQQL 9 71 595.797926759519 1189.5813005858379 2 595.7977294921875 MULTI HCD FTMS 0 0 0 22723 62795.8125 0.014455396889833667 24 -0.66632080078125 3 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 69.10491478415734 0.009377850133389008 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 50.197 0 0 4.2197 4.2197 85.022 0 0 0 3.2568864632742844 34.71259324240571 3.2568864632742844 9.208187539523749 0 1.8831596456423734 0 0.805462187404089 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]WWQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}AAN{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[PS][KG] 4.2197;3.4457;3.4457;2.4117;2.1144;1.6881 +;-;-;-;-;- + 342 NaN NaN 131459.8 NaN 18570 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22727 90.734 NaN 458100 35 0 48255 0.261 -1 SPMDIFDMF 9 84 567.7279453263786 1133.4413377195572 2 567.7281494140625 MULTI HCD FTMS 0 0 0 22723 58125.62109375 0.25735293405498383 24 -0.66632080078125 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 41.731 0 0 3.6818 0 0 200.01637759422528 0 200.01637759422528 0 15.789266744899493 0 0 0 1.4731975075880328 0 0.3054621874040891 0 {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6818 - 417 + NaN NaN 148360.4 NaN 18571 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22728 90.737 NaN 241250 35 0 31926 0.261 + 35237 YVNLFYVF 8 50 532.7746195170099 1063.5346861008197 2 532.7747802734375 MULTI HCD FTMS 0 0 0 22723 22228.35546875 0.31233034530301834 1 -0.02620697021484375 5 Unmodified _YVNLFYVF_ REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF 14.581692164780916 0.48650662947107914 1 [YV]ED 4 -1 37.435 0 0 3.5199 0 0 0 554.2995699518186 554.2995699518186 16.197887582883936 0 0 0 0 0.4247425010840047 2 0 0 [YV]ED 3.5199 - 31 + NaN NaN 111223.4 NaN 18572 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22729 90.741 NaN 124880 35 0 10791 0.261 + -1 PWMLGCLPF 9 49 560.7701557434464 1119.5257585536926 2 561.2693481445312 MULTI HCD FTMS 0 0 0 22723 32986.16796875 0.26959384848627643 9 -0.23587799072265625 6 Carbamidomethyl (C) _PWMLGC(Carbamidomethyl (C))LPF_ REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3831 0 0 954.4471432966599 0 954.4471432966599 0 1.0475750727131565 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3831 + + 14 + NaN NaN 103707.2 NaN 18573 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22730 90.744 NaN 51364 35 0 4491.5 0.262 + 23855 RSFGPAPDS 9 35 467.2255175847445 NaN 0 467.2259521484375 PEAK HCD FTMS 0 0 0 22723 8151.7685546875 0.23989115622016596 4 -0.1014862060546875 7 Unmodified _RSFGPAPDS_ ENSG00000130487|ENST00000648057|KLHDC7B;KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100945.6 NaN 18574 4154 22723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22732 90.749 NaN 2657100 35 0 492570 0.327 + 27628 TAISLFYEL 9 84 528.7842518804308 1055.5539508276615 2 528.784423828125 MULTI HCD FTMS 0 0 0 22731 1360256.75 0.01009779554172643 28 -0.7677001953125 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 94.619 0 0 8.964 8.964 97.632 0 0 0 5.6424927368725974 57.78659694992121 5.6424927368725974 47.814024405218305 0 2.6549471895720984 0 1.947621246364342 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}{I|L}[TA];{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}{I|L}[TA];{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}{I|L}[TA] 8.964;4.4342;3.2112;2.926;2.6028;2.5395;2.2801;2.0283;1.995;1.0972 +;-;-;-;-;-;-;-;-;- + 884 NaN NaN 489972.1 NaN 18575 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22733 90.753 NaN 577710 35 0 152630 0.261 + 33222 YFEELITML 9 69 587.7887125399347 1173.5628721466694 2 587.7887573242188 MULTI HCD FTMS 0 0 0 22731 224898.71875 0.6855437724402366 -4 0.1046295166015625 2 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 58.678817012210395 0.019429721296335044 1 {I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 5 4 49.38 0 0 4.2077 0 0 568.2173939435562 0 568.2173939435562 0 26.46205332875283 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 4.2077 + + 929 NaN NaN 165948.5 NaN 18576 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22734 90.757 NaN 484870 35 0 111240 0.261 + 30963 VRPSLAGATGV 11 77 514.2983871947625 1026.582221456325 2 514.298583984375 MULTI HCD FTMS 0 0 0 22731 208847.890625 0.855278935958372 -4 0.1046295166015625 3 Unmodified _VRPSLAGATGV_ ENST00000532260.1_1_11:67374475-67374631:+|nuORF 5.296884461304476 0.39569033063702824 1 {M(Oxidation (M))|F} 1 11 15.485 0 0 1.5084 0 0 861.5036672344485 0 861.5036672344485 0 -1.1092437480817807 -1.1092437480817807 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5084 - 40 + NaN NaN 159728 NaN 18577 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22735 90.76 NaN 172520 35 0 29028 0.261 + 33616 YISTWKKDFD 10 38 434.8822772522409 NaN 0 434.88250732421875 PEAK HCD FTMS 0 0 0 22731 59788.78125 0.5289326044216569 21 -0.58111572265625 4 Unmodified _YISTWKKDFD_ REV__EGFLAM|p.H193Y|1|0.4|ENSG00000164318|chr5:38370327-38370327|C/T|missense_variant 3.876331618118854 0.3368666864104206 1 A 1 -1 3.4949 0 0 0.40275 0 0 451.5432582624912 342.1457586557995 793.6890169182907 0 0 0 0 0 0 0 0 0 A 0.40275 - 3 + NaN NaN 106803 NaN 18578 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22736 90.763 NaN 172530 35 0 7625 0.261 -1 0 68 437.2571673314201 1308.7496725944602 3 437.5916442871094 MULTI HCD FTMS 0 0 0 22731 46991.51171875 0.3316785103974299 -7 0.1865692138671875 5 NaN NaN 1 S{[HG]|PP}{[DS]|[MA]|[CV]|TT} 5 -1 13.468 0 0 1.0291 0 0 807.4543324201187 0 807.4543324201187 0 9.488474775526186 0 0 0 0.6989700043360187 0 0 0 S{[HG]|PP}{[DS]|[MA]|[CV]|TT} 1.0291 - 12 NaN NaN 106482.9 NaN 18579 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22737 90.767 NaN 99884 35 0 17887 0.261 + 22397 QPRPQRRQR 9 51 407.9063024768881 1220.6970780308643 3 408.2411193847656 MULTI HCD FTMS 0 0 0 22731 20928.8671875 0.08064991992795835 24 -0.6763381958007812 6 Unmodified _QPRPQRRQR_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 2.498486711656943 0.33207666356665205 1 {M(Oxidation (M))|F} 1 -1 1.2591 0 0 0.10314 0 0 941.5466396537144 129.05574976138908 1070.6023894151035 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.10314 - 5 + NaN NaN 95782 NaN 18580 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22738 90.77 NaN 77214 35 0 7336 0.261 + 4580 EYLPIGGLAEF 11 42 604.8141514235541 NaN 0 604.812744140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 15.248480904072842 0.2934134091661347 1 E{I|L} 2 9 12.078 0 0 1.0002 0 0 673.3693173961332 289.08356653385005 962.4528839299833 0 0 0 0 0 0.5 0 0 0 E{I|L} 1.0002 - 17 + NaN NaN 87424.6 NaN 18581 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22739 90.773 NaN 49246 35 0 4113.7 0.261 -1 0 36 633.3692585006554 1264.7239640681107 2 635.8271484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91026.2 NaN 18582 4155 22731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22741 90.778 NaN 1461200 35 0 534740 0.327 -1 0 43 405.11870980179765 808.2228666703953 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22740 553022.0625 0.5322013158826223 7 -0.18021392822265625 1 NaN NaN 1 K 1 -1 1.5938 0 0 0.1972 0 0 494.1139675351361 182.99228845767814 677.1062559928142 0 0 0 0 0 0 0 0 0 K 0.1972 - 8 + NaN NaN 301319.5 NaN 18583 4156 22740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22742 90.783 NaN 581900 35 0 61845 0.261 -1 0 120 641.8824831880886 1281.750413442977 2 641.8826904296875 MULTI HCD FTMS 0 0 0 22740 437349.25 0.22430186821313072 -22 0.5827407836914062 2 NaN NaN 1 AR{I|L}W 4 -1 20.177 0 0 1.5742 0 0 737.4400019212959 0 737.4400019212959 0 11.763984550051017 0 0 0 0 0 0 0 AR{I|L}W 1.5742 - 878 + NaN NaN 182626.4 NaN 18584 4156 22740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22743 90.786 NaN 758610 35 0 93015 0.263 + 11333 IYMRQEGF 8 78 522.2529356621841 1042.491318391168 2 522.2528076171875 MULTI HCD FTMS 0 0 0 22740 111871.0234375 0.43441377781348134 3 -0.0686798095703125 3 Unmodified _IYMRQEGF_ ENSG00000006468|ENST00000430479|ETV1;ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-2|ETV1;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1 11.114462752807354 0.5120171699125776 1 A{I|L}YG{M(Oxidation (M))|F} 5 5 25.662 0 0 2.4616 0 0 473.2081285491743 0 473.2081285491743 0 9.208187539523749 0 0 0 0 0 0 0 A{I|L}YG{M(Oxidation (M))|F} 2.4616 - 229 + NaN NaN 189180.2 NaN 18585 4156 22740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22744 90.79 NaN 165440 35 0 10122 0.262 -1 0 61 422.58167378528765 1264.723191956063 3 422.58154296875 MULTI HCD FTMS 0 0 0 22740 56457.2265625 0.13091019488441719 -21 0.5501174926757812 4 NaN NaN 1 V 1 -1 2.4743 0 0 0.19564 0 0 894.5031276860358 268.1241854303344 1162.6273131163703 0 0 0 0 0 0 0 0 0 V 0.19564 - 1 + NaN NaN 111089.2 NaN 18586 4156 22740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22746 90.795 NaN 679370 35 0 34858 0.327 -1 0 89 611.3564525007829 1220.6983520683657 2 611.3562622070312 MULTI HCD FTMS 0 0 0 22745 611384.3125 0.17918890832056938 44 -1.2061004638671875 1 NaN NaN 1 Q 1 -1 8.5835 0 0 0.70316 0 0 590.3528453318407 499.27641767487034 1089.629263006711 0 0 0 0 0 0.6109243748081782 0 0 0 Q 0.70316 - 154 + NaN NaN 191190.8 NaN 18587 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22747 90.799 NaN 615810 35 0 82254 0.261 -1 FTIYQIAEM 9 77 566.2713012946961 NaN 0 566.2894287109375 PEAK HCD FTMS 0 0 0 22745 10504.8505859375 0.47171553076294576 8 -0.21958160400390625 2 Oxidation (M) _FTIYQIAEM(Oxidation (M))_ ENSG00000139865|ENST00000553443|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6 22.736283301280096 0.1690317064107932 1 EA{I|L}D{M(Oxidation (M))|F}KP 7 -1 48.805 0 0 4.317 0 0 165.03942176460038 162.05613123111564 327.09555299571605 0 0 0 0 0 0.2614393726401688 0 1.4916440611282624 0.3807196863200844 EA{I|L}D{M(Oxidation (M))|F}KP 4.317 - 827 + NaN NaN 170585.5 NaN 18588 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22748 90.803 NaN 186580 35 0 49284 0.261 + -1 KRSRMLTL 8 38 510.80238937840306 1019.5902258236061 2 510.80255126953125 MULTI HCD FTMS 0 0 0 22745 27907.615234375 0.013462241443392822 -6 0.15035247802734375 3 Oxidation (M) _KRSRM(Oxidation (M))LTL_ REV__ENST00000474140.1_1_1:3809311-3816771:-|nuORF;REV__ENST00000486765.5_1_1:3812732-3816762:-|nuORF 24.020572477871973 0.4170589785259073 1 {M(Oxidation (M))|F}{I|L}T{I|L} 4 -1 33.544 0 0 3.29 0 0 527.3202500929406 0 527.3202500929406 0 16.37726867220145 0 0 0 1.305462187404089 0 0.8807196863200843 0 {M(Oxidation (M))|F}{I|L}T{I|L} 3.29 + + 63 + NaN NaN 104945.2 NaN 18589 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22749 90.806 NaN 160490 35 0 11252 0.261 + 34625 YPQDWFQVL 9 63 598.2917338610962 1194.5689147889923 2 598.7809448242188 MULTI HCD FTMS 0 0 0 22745 13247.630859375 0.628337202473038 3 -0.07863616943359375 4 Unmodified _YPQDWFQVL_ ENSG00000104894|ENST00000323906|CD37;ENST00000391859.6_1_19:49841166-49843582:+|nuORF;nc|ENSG00000104894|P11049-2|CD37;nc|ENSG00000104894|P11049-3|CD37 15.248480904072842 0.22861284681709862 1 {M(Oxidation (M))|F}QV{I|L} 4 5 37.155 0 0 3.1103 0 0 689.2813845139755 0 689.2813845139755 0 23.202300473794892 0 0 0 1.274227503252014 0 0 0 + {M(Oxidation (M))|F}QV{I|L} 3.1103 + + 101 NaN NaN 102189.6 NaN 18590 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22750 90.809 NaN 274940 35 0 36159 0.261 + 26733 SYDVFQLEF 9 54 574.2689788586981 1146.5234047841961 2 574.2681274414062 MULTI HCD FTMS 0 0 0 22745 78160.3984375 0.03759108252182888 -6 0.15035247802734375 5 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 93.16586880292088 0.00444300900000894 1 V{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 6 3 82.454 0 0 7.1916 0 0 365.1238819343899 0 365.1238819343899 0 62.62070344032047 0 0 0 2.9247425010840047 0 0.6747425010840047 0.3807196863200844 + V{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 7.1916 + + 425 + NaN NaN 139914.1 NaN 18591 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22751 90.813 NaN 101390 35 0 6591.8 0.261 + 8219 GRLKHERVK 9 66 561.8457648596961 1121.6769767861922 2 561.8455200195312 MULTI HCD FTMS 0 0 0 22745 41057.05078125 0.17968781253365748 -7 0.1799163818359375 6 Unmodified _GRLKHERVK_ ENSG00000092148|ENST00000399332|HECTD1 1.6526216038709556 0.33848895094777925 1 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.3805 0 0 956.5979800594329 0 956.5979800594329 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3805 - 47 + NaN NaN 95894 NaN 18592 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22752 90.816 NaN 47582 35 0 4871.4 0.261 + -1 NQEMPCYP 8 30 499.1936421671907 NaN 0 499.1938781738281 PEAK HCD FTMS 0 0 0 22745 20451.73046875 0.7544100369889293 1 -0.0295562744140625 7 Oxidation (M) _NQEM(Oxidation (M))PCYP_ REV__ENSG00000145916|ENST00000313386|RMND5B;REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF;REV__ENST00000515360.5_1_5:177569546-177575030:+|nuORF;REV__nc|ENSG00000145916|Q96G75-2|RMND5B 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91353.7 NaN 18593 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22753 90.819 NaN 55452 35 0 4814.2 0.261 + -1 CDMFQRPPGS 10 45 605.753662109375 NaN 0 605.753662109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DM(Oxidation (M))FQRPPGS_ REV__ENSG00000177992|ENST00000325643|SPATA31E1 2.9952420565917617 0.3376207769591857 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85630.6 NaN 18594 4157 22745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22755 90.824 NaN 1202600 35 0 55465 0.327 -1 0 112 633.3692585006554 1264.7239640681107 2 633.3695678710938 MULTI HCD FTMS 0 0 0 22754 1236162.875 0.38794828445729623 -15 0.39617919921875 1 NaN NaN 1 V 1 -1 8.4113 0 0 0.66507 0 0 938.5298931181657 224.09760461978752 1162.6274977379533 0 0 0 0 0 0.3807196863200844 0 0 0 V 0.66507 - 180 + NaN NaN 279376.3 NaN 18595 4158 22754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22756 90.828 NaN 475670 35 0 71557 0.261 + 29938 VFFEVSPVSF 10 80 579.2966595453496 1156.578766157499 2 579.2975463867188 MULTI HCD FTMS 0 0 0 22754 154729.453125 0.5820477777504792 3 -0.07525634765625 2 Unmodified _VFFEVSPVSF_ ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1 43.77239144664712 0.11267038882370725 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}GSV[RN]S{M(Oxidation (M))|F} 10 7 {[YD]|[{M(Oxidation (M))|F}M]} + + 50.954 1.338 0.48111 4.4055 4.4055 60.647 0 0 0 0 40.2536691925237 0 0 0 2.3252574989159953 0 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}GSV[RN]S{M(Oxidation (M))|F} 4.4055 - 1116 + NaN NaN 156588.2 NaN 18596 4158 22754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22757 90.832 NaN 231490 35 0 32702 0.261 + 10983 IYEEFLAAF 9 40 551.7767961754525 1101.539039417705 2 551.7769165039062 MULTI HCD FTMS 0 0 0 22754 130837.6015625 0.39975843888473706 6 -0.1671905517578125 3 Unmodified _IYEEFLAAF_ ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP 42.09456458481378 0.05572955244001856 1 {M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 5 4 62.206 0 0 5.6472 0 0 534.23308346243 0 534.23308346243 0 47.51348757971677 0 0 0 2.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 5.6472 + + 70 + NaN NaN 117628 NaN 18597 4158 22754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22758 90.835 NaN 122200 35 0 11644 0.261 -1 0 53 622.3475010661663 621.3402245995662 1 622.3477783203125 MULTI HCD FTMS 0 0 0 22754 33709.91796875 0.08004860980578563 30 -0.819671630859375 4 NaN NaN 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 10.458 0 0 1.6831 0 0 231.1500828532756 0 231.1500828532756 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.6831 - 5 + NaN NaN 99391.5 NaN 18598 4158 22754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22759 90.839 NaN 117340 35 0 38603 0.261 -1 MMCLMYGATL 10 40 583.2426657112812 1164.4707784893624 2 583.2426147460938 MULTI HCD FTMS 0 0 0 22754 31879.17578125 0.450954860247723 6 -0.1671905517578125 5 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))CLMYGATL_ ACSF2|p.K510Yfs*7|1|0.24|ENSG00000167107|chr17:50473717-50473721|AAGGA/-|frameshift_variant;ENSG00000167107|ENST00000300441|ACSF2;ENST00000513101.1_1_17:48540594-48548505:+|nuORF;nc|ENSG00000167107|Q96CM8-2|ACSF2;nc|ENSG00000167107|Q96CM8-3|ACSF2;nc|ENSG00000167107|Q96CM8-4|ACSF2 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97537.2 NaN 18599 4158 22754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22760 90.842 NaN 78548 35 0 17057 0.263 + -1 CLMSYKTARMH 11 47 452.8804765272688 NaN 0 452.8702087402344 PEAK HCD FTMS 0 0 0 22754 17390.330078125 0.6926839617060012 10 -0.28851318359375 6 Oxidation (M) _CLMSYKTARM(Oxidation (M))H_ REV__ENST00000465534.5_1_1:207510501-207531913:+|nuORF 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91783.5 NaN 18600 4158 22754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22762 90.847 NaN 733810 35 0 257390 0.327 + 26787 SYIALPLTL 9 53 495.7971330979099 989.5797132626199 2 495.79718017578125 MULTI HCD FTMS 0 0 0 22761 468126.875 0.34079865959737504 7 -0.20658111572265625 1 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 103.74828524460852 0.00396301343438984 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}[{I|L}P]T{I|L} 9 0 + 62.33 0 0 6.2986 6.2986 92.041 0 0 0 8.905469099468988 8.905469099468988 8.905469099468988 25.516609670558587 0 2.142159058960253 0 0.805462187404089 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}[{I|L}P]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}{I|L}[{I|L}P]T{I|L} 6.2986;3.7201 +;- + 84 NaN NaN 198421.1 NaN 18601 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22763 90.851 NaN 412170 35 0 51823 0.261 -1 0 79 539.7751241686321 1077.5356954040642 2 539.7756958007812 MULTI HCD FTMS 0 0 0 22761 320565.71875 0.009696060387871793 32 -0.8751907348632812 2 NaN NaN 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 74.073 0 0 6.8743 0 0 0 279.0957125299438 279.0957125299438 42.38056592493354 0 0 0 0 1.9802046884880937 1.3979400086720375 0.7059771852360797 0 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}Y 6.8743 - 590 + NaN NaN 148102.4 NaN 18602 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22764 90.855 NaN 388930 35 0 53259 0.261 + 15179 LMSLIINTF 9 61 526.2967101904258 1050.5788674476514 2 526.2965698242188 MULTI HCD FTMS 0 0 0 22761 224425.8125 0.23373627329990643 9 -0.265655517578125 3 Unmodified _LMSLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 56.17704186161178 0.022929533404884107 1 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 4 52.479 0 0 4.9953 0 0 444.24062389472016 0 444.24062389472016 0 31.982478080142194 0 0 0 1.274227503252014 0 0.805462187404089 0 + {I|L}{I|L}NT{M(Oxidation (M))|F} 4.9953 + + 98 + NaN NaN 131316 NaN 18603 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22765 90.858 NaN 369740 35 0 31460 0.261 + 25714 SKETKKKEK 9 100 553.3324376954826 1104.650322457765 2 553.3328857421875 MULTI HCD FTMS 0 0 0 22761 157098.453125 0.36590979396263273 -3 0.0686798095703125 4 Unmodified _SKETKKKEK_ REV__ENSG00000196187|ENST00000366835|TMEM63A;REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.1858 0 0 939.5710663315916 0 939.5710663315916 0 0.8753718491936251 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1858 - 665 + NaN NaN 141794.4 NaN 18604 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22766 90.862 NaN 404110 35 0 19506 0.261 + 33870 YLLPCLPLL 9 80 522.8119750618802 1043.6093971905602 2 522.812255859375 MULTI HCD FTMS 0 0 0 22761 122767.171875 0.7046280665328395 3 -0.0786590576171875 5 Unmodified _YLLPCLPLL_ REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF 9.347437153973935 0.2795965555214564 1 V{I|L} 2 -1 16.198 0 0 1.5521 0 0 813.42680556465 0 813.42680556465 0 9.291746928241128 0 0 0 0 0 0 0 V{I|L} 1.5521 - 25 NaN NaN 143190.9 NaN 18605 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22767 90.865 NaN 172410 35 0 25559 0.261 -1 MKLRLFVVF 9 71 597.8563079059568 1193.6980628787135 2 597.8565063476562 MULTI HCD FTMS 0 0 0 22761 84080.4921875 0.5975049291936064 -2 0.0524139404296875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKLRLFVVF_ ENST00000437932.5_1_4:95586889-95586922:+|nuORF 2.0597508629832335 0.3354026079994024 1 M 1 -1 3.9794 0 0 0.33337 0 0 633.3337912569756 426.2978914850219 1059.6316827419976 0 0 0 0 0 0 0 0 0 M 0.33337 + + 42 + NaN NaN 102591.8 NaN 18606 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22768 90.868 NaN 96125 35 0 20184 0.262 + 10616 IPQLLEAVL 9 34 498.31044643002224 994.6063399268445 2 498.3101806640625 MULTI HCD FTMS 0 0 0 22761 41486.64453125 0.06761661024362854 -10 0.2552032470703125 7 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 8.155526934196011 0.2891920862272901 1 EAV{I|L} 4 5 36.938 0 0 3.7139 0 0 564.3637261530241 0 564.3637261530241 0 36.453650195120844 0 0 0 0.5 0 0 0 + EAV{I|L} 3.7139 + + 6 NaN NaN 105939.4 NaN 18607 4159 22761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22770 90.873 NaN 1502900 35 0 110940 0.327 -1 0 112 633.3692585006554 1264.7239640681107 2 633.3695068359375 MULTI HCD FTMS 0 0 0 22769 1378787.125 0.4327084323540761 -13 0.33377838134765625 1 NaN NaN 1 V 1 -1 8.2268 0 0 0.65048 0 0 938.5301770481914 224.09771143131096 1162.6278884795024 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.65048 - 344 + NaN NaN 312936 NaN 18608 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22771 90.878 NaN 266660 35 0 10449 0.261 -1 0 88 619.8697049488608 1237.7248569645215 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22769 264784.03125 0.1193397254322185 29 -0.7900314331054688 2 NaN NaN 1 D 1 -1 11.039 0 0 0.89189 0 0 105.07884315651138 1014.5706881158811 1119.6495312723926 0 0 0 0 0 0.3807196863200844 0 0.3252574989159953 0 D 0.89189 - 271 + NaN NaN 128157.7 NaN 18609 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22772 90.881 NaN 762110 35 0 82107 0.261 + 29169 TYIQILESF 9 79 557.2952264695142 1112.5759000058283 2 557.2966918945312 MULTI HCD FTMS 0 0 0 22769 164452.53125 0.11989711480363914 14 -0.4144744873046875 3 Unmodified _TYIQILESF_ ENSG00000187790|ENST00000267430|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM 90.13494162714682 0.004522430935000059 1 [YT]{I|L}Q{I|L}{I|L}ES{M(Oxidation (M))|F} 9 0 + 81.112 0 0 7.2904 7.2904 88.818 0 0 0 7.53160730965476 13.46787486224656 7.53160730965476 7.53160730965476 0 2.6747425010840047 1.3010299956639813 1.024227503252014 0 + + [YT]{I|L}Q{I|L}{I|L}ES{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}[AG]{I|L}{I|L}ES{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[VS]VVES{M(Oxidation (M))|F};[YT]{I|L}[VG]VVES{M(Oxidation (M))|F};[YT]{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}AAS{M(Oxidation (M))|F};[YT]{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}A{M(Oxidation (M))|F};[YT]{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[QT]{M(Oxidation (M))|F};[YT]{I|L}{NN|[MP]|[D{I|L}]|[EV]}[KP][YT];[HV][Q{I|L}]K[RD]A{M(Oxidation (M))|F} 7.2904;6.6135;6.4628;3.388;3.2373;2.7998;1.6292;1.4491;0.23841;0.0086612 +;-;-;-;-;-;-;-;-;- + 618 NaN NaN 198705.8 NaN 18610 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22773 90.884 NaN 146680 35 0 17230 0.261 -1 0 46 506.78855268034863 1011.5625524274973 2 506.7885437011719 MULTI HCD FTMS 0 0 0 22769 50025.46875 0.1791536212239095 8 -0.23943328857421875 4 NaN NaN 1 {I|L}AMT{I|L} 5 -1 43.984 0 0 4.3482 0 0 464.2602095460795 0 464.2602095460795 0 38.01538440272459 0 0 0 1.3807196863200843 0 0 0 {I|L}AMT{I|L} 4.3482 - 60 NaN NaN 109097.4 NaN 18611 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22774 90.888 NaN 182230 35 0 11369 0.261 + 12236 KLERREKQSN 10 72 644.3602717404614 1286.7059905477226 2 644.3598022460938 MULTI HCD FTMS 0 0 0 22769 114366.0234375 0.44559660297239917 -9 0.2289886474609375 5 Unmodified _KLERREKQSN_ REV__ENSG00000003987|ENST00000180173|MTMR7;REV__nc|ENSG00000003987|Q9Y216-2|MTMR7 2.9952420565917617 0.4594494122822477 1 W 1 -1 6.9897 0 0 0.54322 0 0 576.3614603736977 521.2568453424436 1097.6183057161413 0 0 0 0 0 0 0 0 0 W 0.54322 - 57 + NaN NaN 105309.2 NaN 18612 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22775 90.891 NaN 163870 35 0 11470 0.261 + 5316 FFKSLLMLGF 10 54 601.8375926804706 NaN 0 601.8253784179688 PEAK HCD FTMS 0 0 0 22769 19509.5 1 0 0 6 Unmodified _FFKSLLMLGF_ REV__ENST00000281171.8_2_12:15749701-15749842:+|nuORF 6.723162845929126 0.3344301934401713 1 YA{I|L}N 4 -1 7.665 0 0 0.63787 0 0 165.10216004638443 572.3078707330686 737.4100307794531 0 0 0 0 0 0 0 0 0.3252574989159953 YA{I|L}N 0.63787 - 67 + NaN NaN 98355 NaN 18613 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22776 90.894 NaN 134920 35 0 15752 0.261 + -1 IMLYICIF 8 45 544.7785201731978 NaN 0 544.7608032226562 PEAK HCD FTMS 0 0 0 22769 13201.732421875 1 0 0 7 Carbamidomethyl (C),Oxidation (M) _IM(Oxidation (M))LYIC(Carbamidomethyl (C))IF_ REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense 6.354104778181461 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.64271 0 0 626.3287860965924 359.1118563287719 985.4406424253643 0 0 0 0 0 0 0 0 0 V 0.64271 - 5 + NaN NaN 107427.2 NaN 18614 4160 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22778 90.899 NaN 1727800 35 0 292460 0.327 + 27629 TAISLFYEL 9 73 528.7842518804308 1055.5539508276615 2 528.7845458984375 MULTI HCD FTMS 0 0 0 22777 1061412.625 0.00787934165565225 34 -0.9241104125976562 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 93.867 0 0 8.8927 8.8927 97.985 0 0 0 5.6424927368725974 63.566147098514705 5.6424927368725974 61.20751598434992 0 2.6549471895720984 0 1.872363747448347 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}{I|L}[TA];[YE]{I|L}{M(Oxidation (M))|F}S{I|L}{I|L}[TA];{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}[TA]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YES{I|L}[TA]{I|L};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}{I|L}[TA];{[QN]|[E{I|L}]|[KN]}[KP]{M(Oxidation (M))|F}[HN][TA] 8.8927;3.094;2.7909;2.7158;1.9782;1.9031;1.3365;0.85865;0.52384;0.10244 +;-;-;-;-;-;-;-;-;- + 458 NaN NaN 340273.3 NaN 18615 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22779 90.904 NaN 614390 35 0 168140 0.261 + 33223 YFEELITML 9 60 587.7887125399347 1173.5628721466694 2 587.7890014648438 MULTI HCD FTMS 0 0 0 22777 263637.09375 0.8036273786222061 2 -0.05913543701171875 2 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 74.92900055777586 0.007493270374442853 1 [Y{M(Oxidation (M))|F}]EE{I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 9 0 + 64.708 0 0 5.5138 5.5138 91.065 0 0 0 4.137342758552691 42.03192854104806 4.137342758552691 30.944575506315033 0 2.2302046884880937 0 0.7614393726401688 0 + + [Y{M(Oxidation (M))|F}]EE{I|L}{I|L}T{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[HN]{I|L}T{M(Oxidation (M))|F}{I|L} 5.5138;2.877 +;- + 249 NaN NaN 179893 NaN 18616 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22780 90.907 NaN 1146400 35 0 82836 0.261 + 4463 EYINFLENL 9 106 577.790189445472 1153.565825957744 2 577.7918701171875 MULTI HCD FTMS 0 0 0 22777 553155.5 0.5935999901273332 -2 0.052398681640625 3 Unmodified _EYINFLENL_ ENSG00000181381|ENST00000682922|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF;nc|ENSG00000181381|Q5H9U9-2|DDX60L 226.55155137780747 3.406250385183877E-24 1 [YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L} 9 3 + 91.848 0 0 7.9621 7.9621 87.74 0 0 0 2.800084529637985 10.693788420849899 2.800084529637985 2.800084529637985 0 1.8494850021680094 1.6989700043360187 1.8556270500406935 1.079689690656103 [YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L};{NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}{I|L}EN{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}EGG{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}Y{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]GAE{M(Oxidation (M))|F}{I|L}EN{I|L};{NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}{I|L}EGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]Y{M(Oxidation (M))|F}{I|L}EN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Q{M(Oxidation (M))|F}Y{I|L}EN{I|L} 7.9621;7.7193;7.481;7.1936;7.1638;7.0875;7.0251;6.9211;6.9211;6.7158 -;-;+;-;-;-;-;-;-;- + 10529 NaN NaN 261054.5 NaN 18617 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22781 90.911 NaN 446320 35 0 49107 0.261 + 8119 GLLSPQRKE 9 80 514.2983871947625 1026.582221456325 2 514.298583984375 MULTI HCD FTMS 0 0 0 22777 205523.78125 0.8416659628000072 2 -0.05913543701171875 4 Unmodified _GLLSPQRKE_ ENSG00000158161|ENST00000373871|EYA3;nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3 7.289230182591677 0.29575926068275815 1 VA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AV{M(Oxidation (M))|F} 8 8 35.923 0 0 3.4993 0 0 164.12013757136248 0 164.12013757136248 0 30.438134727926 0 0 0 0.3807196863200844 0 0 0 VA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AV{M(Oxidation (M))|F} 3.4993 - 359 + NaN NaN 151522.1 NaN 18618 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22782 90.914 NaN 312170 35 0 47768 0.261 + 7867 FYTFPFQQL 9 55 595.797926759519 1189.5813005858379 2 595.7977905273438 MULTI HCD FTMS 0 0 0 22777 65016.609375 0.014966617287528615 31 -0.8521804809570312 5 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 51.629811660486645 0.02929079705179888 1 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 56.181 0 0 4.7228 4.7228 85.777 0 0 0 3.65279269351241 51.57698754585809 3.65279269351241 9.208187539523749 0 1.6861818737241734 0 0.4247425010840047 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]WWQ{I|L} 4.7228;3.9487;3.9487;3.1783;1.8622 +;-;-;-;- + 141 NaN NaN 132140.9 NaN 18619 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22783 90.917 NaN 45997 35 0 5518.4 0.263 + -1 LCFLMTPL 8 38 477.24617253186494 NaN 0 477.2303466796875 PEAK HCD FTMS 0 0 0 22777 7889.5 1 0 0 6 Oxidation (M) _LCFLM(Oxidation (M))TPL_ REV__ENST00000461876.5_1_2:113514640-113522175:-|nuORF 2.577480529830294 0.38822285293237185 1 TR 2 -1 10.969 0 0 1.1516 0 0 129.99660424166115 562.3218477838499 692.3184520255111 0 0 0 0 0 0 0 0 0 TR 1.1516 - 9 + NaN NaN 92421.3 NaN 18620 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22784 90.921 NaN 127520 35 0 27339 0.261 -1 SGSCCTTHIAN 11 42 604.2466522068975 NaN 0 604.24609375 PEAK HCD FTMS 0 0 0 22777 41097.65625 0.7226430065245989 -4 0.1048126220703125 7 2 Carbamidomethyl (C) _SGSC(Carbamidomethyl (C))C(Carbamidomethyl (C))TTHIAN_ ENSG00000117400|ENST00000372470|MPL 2.282774691075616 0.33564456907475565 1 {M(Oxidation (M))|F}T 2 -1 6.9553 0 0 0.5765 0 0 404.0593311698511 551.2627657525999 955.322096922451 0 0 0 0 0 0.28872548999643577 0 0 0 {M(Oxidation (M))|F}T 0.5765 - 17 + NaN NaN 101855.8 NaN 18621 4161 22777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22786 90.926 NaN 488130 35 0 40637 0.327 + -1 YIVCFSER 8 72 537.2581196834011 1072.5016864336021 2 537.2582397460938 MULTI HCD FTMS 0 0 0 22785 152437.078125 0.1086681828571123 -1 0.0262603759765625 1 Carbamidomethyl (C) _YIVC(Carbamidomethyl (C))FSER_ REV__ENSG00000100731|ENST00000304743|PCNX1;REV__nc|ENSG00000100731|Q96RV3-3|PCNX1;REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 13.50788311687929 0.4944073034352369 1 {I|L}R 2 -1 20.969 0 0 1.9552 0 0 785.3199218851969 0 785.3199218851969 0 0.8457627793433176 0 0 0 0 0 0 0 {I|L}R 1.9552 - 192 NaN NaN 154462.2 NaN 18622 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22787 90.93 NaN 715870 35 0 38109 0.261 -1 0 113 641.8824831880886 1281.750413442977 2 641.882568359375 MULTI HCD FTMS 0 0 0 22785 508574.40625 0.26083087931957977 -16 0.415771484375 2 NaN NaN 1 W 1 -1 12.474 0 0 0.97322 0 0 1077.6603235765692 0 1077.6603235765692 0 4.520738480266271 0 0 0 0 0 0 0 W 0.97322 - 213 + NaN NaN 189960.7 NaN 18623 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22788 90.934 NaN 993050 35 0 325920 0.264 -1 0 55 405.11870980179765 808.2228666703953 2 405.1190185546875 MULTI HCD FTMS 0 0 0 22785 270603.3125 0.2604153590973533 13 -0.3848114013671875 3 NaN NaN 1 K 1 -1 1.9897 0 0 0.24618 0 0 494.1141032510632 182.99221216373283 677.1063154147961 0 0 0 0 0 0 0 0 0 K 0.24618 - 8 + NaN NaN 233562.2 NaN 18624 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22789 90.937 NaN 623030 35 0 47063 0.261 -1 0 83 520.8064392356333 1039.5983255380665 2 521.794921875 MULTI HCD FTMS 0 0 0 22785 6113.72265625 0.15057237905365214 1 -0.03287506103515625 4 NaN NaN 1 N{I|L} 2 -1 16.198 0 0 1.5581 0 0 0 809.4368990533811 809.4368990533811 0.7133375178436587 0 0 0 0 0 0 0 0 N{I|L} 1.5581 - 297 + NaN NaN 173332.7 NaN 18625 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22790 90.94 NaN 335130 35 0 21175 0.262 -1 0 67 422.58167378528765 1264.723191956063 3 422.5818786621094 MULTI HCD FTMS 0 0 0 22785 203256.25 0.47130043254107684 -15 0.3862152099609375 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.067 0 0 1099.6442715232488 0 1099.6442715232488 0 -1.1978875828839364 -1.1978875828839364 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.067 - 7 + NaN NaN 145732.5 NaN 18626 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22791 90.944 NaN 785270 35 0 78270 0.261 + -1 LHDLPEEGIM 10 94 585.2806749260933 NaN 0 585.2605590820312 PEAK HCD FTMS 0 0 0 22785 18555.205078125 0.44783685277712854 4 -0.12792205810546875 6 Oxidation (M) _LHDLPEEGIM(Oxidation (M))_ REV__ENSG00000171804|ENST00000447313|WDR87;REV__nc|ENSG00000171804|Q6ZQQ6-2|WDR87;REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 24.020572477871973 0.24806657497419846 1 CDV{M(Oxidation (M))|F}Q{I|L} 6 -1 41.261 0 0 3.5309 0 0 147.11224173439103 313.08030115299067 460.1925428873817 0 0 0 0 0 0 0 0.7614393726401688 0.25 CDV{M(Oxidation (M))|F}Q{I|L} 3.5309 - 2037 + NaN NaN 198706 NaN 18627 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22792 90.947 NaN 585970 35 0 71207 0.261 + 10101 IFHAVFSMI 9 79 532.7848204664269 1063.5550879996538 2 532.784912109375 MULTI HCD FTMS 0 0 0 22785 38664.109375 0.19005037384848583 -1 0.0262603759765625 7 Unmodified _IFHAVFSMI_ ENSG00000137561|ENST00000260116|TTPA 7.910154910731844 0.2910521888787154 1 YY[PS]Q{I|L}{M(Oxidation (M))|F} 7 8 17.924 0 0 1.6853 0 0 0 162.10210902413885 162.10210902413885 3.320101082583804 0 0 0 0 0 2 0 0 YY[PS]Q{I|L}{M(Oxidation (M))|F} 1.6853 - 332 NaN NaN 164199.3 NaN 18628 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22793 90.95 NaN 264560 35 0 21604 0.261 -1 RMPCCCNPF 9 64 600.7246100771383 1199.4346672210766 2 600.7244873046875 MULTI HCD FTMS 0 0 0 22785 38309.69140625 0.20127497589366647 -1 0.0262603759765625 8 2 Carbamidomethyl (C),Oxidation (M) _RM(Oxidation (M))PC(Carbamidomethyl (C))C(Carbamidomethyl (C))CNPF_ ENST00000372390.8_1_X:106956815-106956884:-|nuORF 1.844237919475145 0.33703635659052655 1 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NN 8 -1 30.085 0 0 2.5083 0 0 0 160.90253766468905 160.90253766468905 10.916375079047498 0 0 0 0 0 1.5228787452803376 0.3494850021680094 0.3252574989159953 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NN 2.5083 - 133 NaN NaN 116748.3 NaN 18629 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22794 90.954 NaN 183500 35 0 14186 0.261 + -1 FLGQMCLEF 9 56 580.7575884569756 1159.500623980751 2 581.25830078125 MULTI HCD FTMS 0 0 0 22785 40560.62109375 0.2926427984891897 -7 0.17679595947265625 9 Carbamidomethyl (C),Oxidation (M) _FLGQM(Oxidation (M))C(Carbamidomethyl (C))LEF_ REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF 15.847184025352803 0.2234401846867398 1 E{I|L}Q[DC]{I|L}E{M(Oxidation (M))|F} 8 -1 64.998 0 0 5.6057 0 0 164.08013749738922 0 164.08013749738922 0 51.18562527100117 0 0 0 0.3807196863200844 0 2.004432191740108 0 E{I|L}Q[DC]{I|L}E{M(Oxidation (M))|F} 5.6057 - 149 + NaN NaN 105901.8 NaN 18630 4162 22785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22796 90.958 NaN 3226400 35 0 456280 0.327 + 26734 SYDVFQLEF 9 96 574.2689788586981 1146.5234047841961 2 574.2691650390625 MULTI HCD FTMS 0 0 0 22795 2079227.125 1 0 0 1 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 160.6895995991744 8.89223804155775E-09 1 {[YD]|[{M(Oxidation (M))|F}M]}SV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 9 2 + 105.83 0 0 9.2305 9.2305 91.16 0 0 0 0.5129338670565886 61.39969987625378 0.5129338670565886 6.210149894766701 0 2.8494850021680094 1.2218487496163564 2.004432191740108 0 {[YD]|[{M(Oxidation (M))|F}M]}SV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SV{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SV{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F}E;{[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F}E;{[YD]|[{M(Oxidation (M))|F}M]}SV{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F}E;{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F} 9.2305;8.6888;8.4273;8.1813;7.8857;7.7443;7.6397;7.3782;6.9912;6.9412 -;+;-;-;-;-;-;-;-;- + 3707 NaN NaN 571843.6 NaN 18631 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22797 90.963 NaN 462310 35 0 45264 0.261 -1 0 80 611.3564525007829 1220.6983520683657 2 611.3563232421875 MULTI HCD FTMS 0 0 0 22795 304585.5 0.08927010739300706 50 -1.3466262817382812 2 NaN NaN 1 M{[MG]|[TS]}{[HG]|PP}[{M(Oxidation (M))|F}V] 7 -1 10.193 0 0 0.83499 0 0 443.3031483380875 0 443.3031483380875 0 1.6978586455524258 0 0 0 0.6694451763165201 0 0.3252574989159953 0 M{[MG]|[TS]}{[HG]|PP}[{M(Oxidation (M))|F}V] 0.83499 - 69 NaN NaN 152409.7 NaN 18632 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22798 90.966 NaN 725160 35 0 87871 0.261 + 31559 VYGVFSIAEF 10 96 566.2893476305687 1130.5641423279374 2 566.2893676757812 MULTI HCD FTMS 0 0 0 22795 374798.5 0.6546294906482296 2 -0.055633544921875 3 Unmodified _VYGVFSIAEF_ ENSG00000129625|ENST00000379638|REEP5;ENST00000497856.6_1_5:112228472-112256990:-|nuORF;nc|ENSG00000129625|Q00765-2|REEP5 107.99703571036002 5.36490182455341E-05 1 [YV]GVS{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F} 10 2 + 87.484 0 0 7.7381 7.7381 87.121 0 0 0 0.7474905430751733 58.314243664528576 0.7474905430751733 2.04119982655925 0 2.4247425010840047 0 1.6861818737241734 0 [YV]GVS{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YV]VGS{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YK]V{M(Oxidation (M))|F}D{I|L}AE{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}D{I|L}AE{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}T]S{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YK]VD{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YV]KD{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KT]{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}T]{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YT]T{I|L}{M(Oxidation (M))|F}SVGP{M(Oxidation (M))|F} 7.7381;7.5576;7.3328;7.2924;7.0746;6.8442;6.8038;6.4766;6.4657;6.316 -;-;-;-;-;-;-;-;-;- 3755 NaN NaN 207333.9 NaN 18633 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22799 90.97 NaN 569140 35 0 22100 0.261 + -1 MVKKMKAVLN 10 103 589.3429652941128 1176.6713776550255 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22795 212986.15625 0.7517928490763797 1 -0.03279876708984375 4 Oxidation (M) _M(Oxidation (M))VKKMKAVLN_ REV__ENSG00000146833|ENST00000349062|TRIM4;REV__nc|ENSG00000146833|Q9C037-3|TRIM4;REV__nc|ENSG00000146833|Q9C037|TRIM4 9.38312468134398 0.42334543440173333 1 E{I|L}{M(Oxidation (M))|F}KK[{M(Oxidation (M))|F}V] 7 -1 14.09 0 0 1.1974 0 0 267.11909682441564 0 267.11909682441564 0 5.060968182863286 0 0 0 0.2742275032520141 0 0.28872548999643577 0 E{I|L}{M(Oxidation (M))|F}KK[{M(Oxidation (M))|F}V] 1.1974 - 703 NaN NaN 171824.4 NaN 18634 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22800 90.973 NaN 206100 35 0 9189.5 0.261 + 23752 RRGGTPRPLL 10 77 561.8457648596961 1121.6769767861922 2 561.8458862304688 MULTI HCD FTMS 0 0 0 22795 183827.1875 0.8045269832477686 -1 0.03287506103515625 5 Unmodified _RRGGTPRPLL_ REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF 3.2813086475875832 0.45793521633868084 1 YV[KP][{M(Oxidation (M))|F}V] 6 -1 13.038 0 0 1.1623 0 0 370.22053725410314 0 370.22053725410314 0 2.5530173450948563 0 0 0 0.28872548999643577 0 0 0.5 YV[KP][{M(Oxidation (M))|F}V] 1.1623 - 75 NaN NaN 115591.2 NaN 18635 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22801 90.976 NaN 298590 35 0 14893 0.263 + 1775 CLRRLVPPGLW 11 79 437.2571673314201 1308.7496725944602 3 437.5915832519531 MULTI HCD FTMS 0 0 0 22795 92597.6953125 0.6535790087219193 1 -0.03279876708984375 6 Unmodified _CLRRLVPPGLW_ ENSG00000164362|ENST00000310581|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;nc|ENSG00000164362|O14746-4|TERT 1.4551175022131473 0.41253901545122046 1 V 1 10 6.7217 0 0 0.5136 0 0 938.5297447791996 268.1236971490844 1206.653441928284 0 0 0 0 0 0.4247425010840047 0 0 0 + V 0.5136 + + 18 + NaN NaN 128682.9 NaN 18636 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22802 90.98 NaN 2245000 35 0 701610 0.261 + 11224 IYLDGIITI 9 89 510.80238937840306 1019.5902258236061 2 510.8027648925781 MULTI HCD FTMS 0 0 0 22795 2073028.875 1 0 0 7 Unmodified _IYLDGIITI_ ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E 141.82661023413823 1.746659319327287E-05 1 [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L} 9 0 + 90.186 0 0 8.8453 8.8453 93.827 0 0 0 18.65279269351241 43.12494187968328 18.65279269351241 10.268024924119672 0 2.4802046884880937 1.3010299956639813 1.031234684152075 0 + + [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L};[Y{I|L}]D{I|L}G{I|L}{I|L}T{I|L};[{I|L}T]{I|L}G{NN|[MP]|[D{I|L}]|[EV]}{I|L}Y{I|L};[{I|L}T]{I|L}G[YV]{I|L}E{I|L};[Y{I|L}]{I|L}[VS]A{I|L}E{I|L};{M(Oxidation (M))|F}{I|L}{I|L}A{[ET]|[MV]}{I|L}T{I|L} 8.8453;7.8383;3.4721;2.8936;2.7391;2.519 +;-;-;-;-;- + 834 NaN NaN 432794.2 NaN 18637 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22803 90.983 NaN 703120 35 0 121640 0.261 -1 VYMGLLAVF 9 74 514.776663445144 1027.5387739570879 2 514.7785034179688 MULTI HCD FTMS 0 0 0 22795 255770.765625 1 0 0 8 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 36.466142684027034 0.08156716203802528 1 S{I|L}AV{M(Oxidation (M))|F} 5 -1 49.68 0 0 4.8349 0 0 492.24168593574376 0 492.24168593574376 0 41.721675119240516 0 0 0 1.9247425010840047 0 0 0 S{I|L}AV{M(Oxidation (M))|F} 4.8349 - 420 NaN NaN 194688.7 NaN 18638 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22804 90.986 NaN 406110 35 0 49429 0.261 + 30244 VIYTTFNIE 9 66 550.2876101273538 1098.5606673215075 2 549.790283203125 MULTI HCD FTMS 0 0 0 22795 207446.1875 1 0 0 9 Unmodified _VIYTTFNIE_ ENSG00000151577|ENST00000383673|DRD3;nc|ENSG00000151577|P35462-3|DRD3 19.256988751693697 0.19398022840297344 1 {I|L}VE 3 7 31.44 0 0 2.8619 0 0 132.09041208273692 622.2539305971721 754.344342679909 0 0 0 0 0 0.3252574989159953 0 1.1989700043360187 0 {I|L}VE 2.8619 - 94 + NaN NaN 142042.1 NaN 18639 4163 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22806 90.991 NaN 1570600 35 0 141990 0.327 + 4464 EYINFLENL 9 101 577.790189445472 1153.565825957744 2 577.7902221679688 MULTI HCD FTMS 0 0 0 22805 761292.8125 0.8169554600541977 1 -0.02283477783203125 1 Unmodified _EYINFLENL_ ENSG00000181381|ENST00000682922|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF;nc|ENSG00000181381|Q5H9U9-2|DDX60L 211.85494394922918 3.0823645793560227E-18 1 {[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EN{I|L} 9 4 + 104.38 0 0 9.0484 9.0484 88.747 0 0 0 1.2704017207863245 10.967874862246546 1.2704017207863245 1.2704017207863245 0 1.8807196863200843 1.0457574905606752 2.166386562212267 1.2638793319624577 {[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EN{I|L};{NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}{I|L}EN{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}{I|L}EGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]Y{M(Oxidation (M))|F}{I|L}EN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}YE{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}DQ{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EGG{I|L} 9.0484;8.9383;8.3111;8.2502;8.1401;8.1401;8.1192;7.6859;7.5722;7.5128 -;-;+;-;-;-;-;-;-;- + 7376 NaN NaN 320293.3 NaN 18640 4164 22805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22807 90.996 NaN 168280 35 0 48164 0.261 + 26788 SYIALPLTL 9 49 495.7971330979099 989.5797132626199 2 495.7970886230469 MULTI HCD FTMS 0 0 0 22805 74186.5703125 0.05400818682462189 12 -0.33864593505859375 2 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 13.90604991867851 0.24021115267848145 1 WS{M(Oxidation (M))|F} 3 9 17.536 0 0 1.7721 0 0 551.3843224928918 0 551.3843224928918 0 2.0513687187288134 0 0 0 0 0 0 0 WS{M(Oxidation (M))|F} 1.7721 - 29 + NaN NaN 105158.7 NaN 18641 4164 22805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22808 90.999 NaN 374790 35 0 53379 0.261 + -1 LYQPEMEME 9 83 593.24310545938 1184.47165798556 2 593.2432250976562 MULTI HCD FTMS 0 0 0 22805 61814.19921875 0.8189465296024678 1 -0.02283477783203125 3 Oxidation (M) _LYQPEM(Oxidation (M))EME_ REV__ENST00000409301.5_1_7:32584308-32588465:+|nuORF 12.531546534597751 0.2520865569484384 1 CE 2 -1 19.464 0 0 1.6433 0 0 934.3790760724625 0 934.3790760724625 0 2.016675202793717 0 0 0 0 0 0 0 CE 1.6433 - 158 NaN NaN 132954 NaN 18642 4164 22805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22809 91.003 NaN 71293 35 0 10746 0.261 + 17166 LYLRMFKLK 9 31 606.3694521561933 1210.7243513791866 2 606.3703002929688 MULTI HCD FTMS 0 0 0 22805 35029.50390625 0.7990321499054756 -3 0.0919342041015625 4 Unmodified _LYLRMFKLK_ ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-7|AFF2 0.6014990680409731 0.3464572424761564 1 {I|L} 1 8 5.4846 0 0 0.453 0 0 132.25250137715972 962.3644503229124 1094.6169517000721 0 0 0 0 0 0 0 0 0 + {I|L} 0.453 + + 1 + NaN NaN 97808.2 NaN 18643 4164 22805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22810 91.006 NaN 112000 35 0 11483 0.261 + 21196 PQIWRWVLF 9 53 622.8493041992188 NaN 0 622.8493041992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PQIWRWVLF_ REV__ENSG00000174106|ENST00000308330|LEMD3 3.944395688203298 0.27613285122220627 1 G{I|L} 2 -1 18.583 0 0 1.4955 0 0 220.07349433418113 849.4053226405396 1069.4788169747208 0 0 0 0 0 1 0 0 0 G{I|L} 1.4955 - 19 + NaN NaN 98172.9 NaN 18644 4164 22805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22811 91.009 NaN 62981 35 0 18085 0.261 + 17426 LYRNFAAEQY 10 28 637.8125404339028 NaN 0 637.8209838867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYRNFAAEQY_ ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-7|TSC2 1.3295316138638542 0.339046394236575 1 A 1 9 1.2591 0 0 0.098858 0 0 597.406988971518 602.1291597955686 1199.5361487670866 0 0 0 0 0 0 0 0 0 + A 0.098858 + + 1 + NaN NaN 91407.8 NaN 18645 4164 22805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22813 91.014 NaN 1186300 35 0 70656 0.327 -1 0 111 633.3692585006554 1264.7239640681107 2 633.369140625 MULTI HCD FTMS 0 0 0 22812 1709594.875 0.5365267088070703 -8 0.21958160400390625 1 NaN NaN 1 {[HG]|PP}N 3 -1 9.5758 0 0 0.75714 0 0 0 953.5169958511192 953.5169958511192 0.7242495313497805 0 0 0 0 0.6643943297944485 0 0 0 {[HG]|PP}N 0.75714 - 168 + NaN NaN 269258.8 NaN 18646 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22814 91.018 NaN 4341200 35 0 881370 0.263 + 11225 IYLDGIITI 9 87 510.80238937840306 1019.5902258236061 2 511.2897033691406 MULTI HCD FTMS 0 0 0 22812 103629.0234375 0.08817725935084061 2 -0.0623016357421875 2 Unmodified _IYLDGIITI_ ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E 128.3654064809346 0.00070410514679239 1 [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L} 9 0 + 76.715 0 0 7.5241 7.5241 89.485 0 0 0 16.980523937757752 13.728721920568248 13.728721920568248 8.226825097560422 0 2.4049471895720984 1.2218487496163564 0.9634679910804405 0 + + [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L};[Y{I|L}]D{I|L}G{I|L}{I|L}T{I|L};[Y{I|L}]{I|L}{[VA]|[{I|L}G]}D{I|L}T{I|L};[Y{I|L}]{I|L}{[VA]|[{I|L}G]}VET{I|L};[{I|L}T]{I|L}G{NN|[MP]|[D{I|L}]|[EV]}{I|L}Y{I|L};[Y{I|L}]{I|L}{[VA]|[{I|L}G]}VTE{I|L};[{I|L}T]{I|L}G[YV]{I|L}E{I|L};[Y{I|L}]{I|L}{[VA]|[{I|L}G]}S{I|L}E{I|L};{[VA]|[{I|L}G]}[{I|L}T]{NN|[MP]|[D{I|L}]|[EV]}{I|L}Y{I|L};{[VA]|[{I|L}G]}[{I|L}T][YV]{I|L}E{I|L} 7.5241;6.7172;5.7769;4.3771;3.248;3.0366;2.9528;2.8639;0.8918;0.59655 +;-;-;-;-;-;-;-;-;- + 793 NaN NaN 734129.8 NaN 18647 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22815 91.022 NaN 573300 35 0 69886 0.261 -1 0 95 553.3324376954826 1104.650322457765 2 553.3327026367188 MULTI HCD FTMS 0 0 0 22812 372049.28125 0.8665678950881338 3 -0.09848785400390625 3 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 17.703 0 0 1.6026 0 0 840.5055610542203 0 840.5055610542203 0 9.030899869919436 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.6026 - 807 + NaN NaN 167361.5 NaN 18648 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22816 91.025 NaN 665890 35 0 213380 0.261 + 10617 IPQLLEAVL 9 40 498.31044643002224 994.6063399268445 2 498.31048583984375 MULTI HCD FTMS 0 0 0 22812 236301.5 0.3851337365558538 -4 0.11476898193359375 4 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 38.175570920033316 0.07371992880350783 1 {[VA]|[{I|L}G]}[PA]{I|L}{I|L}EAV{I|L} 10 2 + 76.872 0 0 7.7289 7.7289 96.443 0 0 0 19.744237387763093 49.42471268044436 19.744237387763093 76.8719876294113 0 1.9247425010840047 1.6989700043360187 0 0 {[VA]|[{I|L}G]}[PA]{I|L}{I|L}EAV{I|L} 7.7289 - 55 NaN NaN 203513.5 NaN 18649 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22817 91.029 NaN 613400 35 0 98137 0.261 -1 FPSWAMELL 9 67 555.270183976785 1108.52581502037 2 555.2702026367188 MULTI HCD FTMS 0 0 0 22812 236365.96875 0.6174426709024003 -4 0.11476898193359375 5 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 30.636539890814138 0.10832830463492794 1 KC(Carbamidomethyl (C)){M(Oxidation (M))|F}E{I|L}{I|L} 6 -1 46.701 0 0 4.2129 0 0 300.1334706037125 0 300.1334706037125 0 27.492822134202015 0 0 0 1.305462187404089 0 0.25 0 KC(Carbamidomethyl (C)){M(Oxidation (M))|F}E{I|L}{I|L} 4.2129 - 203 NaN NaN 176957.6 NaN 18650 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22818 91.032 NaN 1731700 35 0 187750 0.261 + 33853 YLLFSSVTI 9 107 521.7940394999271 1041.573526066654 2 522.781494140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YLLFSSVTI_ REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF 21.74664581756881 0.17247014374749275 1 [Y{I|L}]{I|L} 3 -1 26.371 0 0 2.5318 0 0 0 649.3192102005185 649.3192102005185 9.381067198043347 0 0 0 0 0.5891368308784531 1.5228787452803376 0 0 [Y{I|L}]{I|L} 2.5318 + + 1460 NaN NaN 346057.8 NaN 18651 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22819 91.035 NaN 140570 35 0 7394.6 0.261 -1 0 69 619.8697049488608 1237.7248569645215 2 619.8695678710938 MULTI HCD FTMS 0 0 0 22812 158156.84375 0.07128222279587068 34 -0.927490234375 7 NaN NaN 1 D 1 -1 4.6041 0 0 0.37198 0 0 61.05307831227339 1058.5994356744752 1119.6525139867485 0 0 0 0 0 0 0 0 0 D 0.37198 - 12 + NaN NaN 103912.9 NaN 18652 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22820 91.039 NaN 563490 35 0 23159 0.261 + 33535 YIIGPNYQSF 10 92 601.2980341483252 1200.5815153634503 2 601.2984619140625 MULTI HCD FTMS 0 0 0 22812 186724.9375 0.7709712057280423 -1 0.02283477783203125 8 Unmodified _YIIGPNYQSF_ REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENST00000397998.7_1_8:19263293-19315147:-|nuORF;REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1 52.268347100219714 0.06954005568441465 1 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NNC 9 -1 79.421 0 0 6.6152 0 0 0 59.03979746093401 59.03979746093401 70.46896906561031 0 0 0 0 2.1861818737241734 1.6989700043360187 1.5726825097560422 0.3494850021680094 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NNC 6.6152 - 741 NaN NaN 170915 NaN 18653 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22821 91.042 NaN 141430 35 0 19018 0.261 + 14409 LEKVRREHK 9 52 597.8563079059568 1193.6980628787135 2 597.8561401367188 MULTI HCD FTMS 0 0 0 22812 103548.53125 0.735851518264915 4 -0.12131500244140625 9 Unmodified _LEKVRREHK_ REV__ENSG00000078814|ENST00000262873|MYH7B;REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000264424|ENST00000255381|MYH4;REV__MYH2|p.R1847H|1|0.2|ENSG00000125414|chr17:10523345-10523345|C/T|missense_variant;REV__nc|ENSG00000078814|A7E2Y1-3|MYH7B;REV__nc|ENSG00000078814|A7E2Y1|MYH7B 1.6526216038709556 0.33848895094777925 1 E 1 -1 5.4846 0 0 0.45946 0 0 132.20875731406346 929.4229290760145 1061.631686390078 0 0 0 0 0 0 0 0 0 E 0.45946 + + 10 + NaN NaN 97314.1 NaN 18654 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22822 91.045 NaN 340840 35 0 19959 0.261 + 15180 LMSLIINTF 9 80 526.2967101904258 1050.5788674476514 2 526.2962646484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _LMSLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 19.256988751693697 0.19398022840297344 1 {I|L}{[QS]|[NT]}{M(Oxidation (M))|F} 4 5 28.698 0 0 2.7316 0 0 557.3249187642763 0 557.3249187642763 0 17.895906230238122 0 0 0 1 0 0.25 0 + {I|L}{[QS]|[NT]}{M(Oxidation (M))|F} 2.7316 + + 209 + NaN NaN 139186.3 NaN 18655 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22823 91.049 NaN 431130 35 0 78572 0.261 + 17849 MHYATELTL 9 87 539.7657522386556 1077.5169515441112 2 539.7760009765625 MULTI HCD FTMS 0 0 0 22812 30303.6484375 0.0874813168322441 -4 0.11476898193359375 11 Unmodified _MHYATELTL_ REV__ENSG00000064419|ENST00000265388|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-1|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-3|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3;REV__TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant 14.838274106304384 0.23215694253501695 1 VWS{I|L}{M(Oxidation (M))|F}Y[YT] 8 -1 + 30.355 0 0 2.8171 2.8171 79.648 0 0 0 1.4755409084695934 1.4755409084695934 1.4755409084695934 1.4755409084695934 0 0 0 0 0 VWS{I|L}{M(Oxidation (M))|F}Y[YT];[DG]{I|L}S{I|L}Q[VP]C{M(Oxidation (M))|F};{I|L}[DG]S{I|L}Q[VP]C{M(Oxidation (M))|F};V{[DA]|[EG]}S{I|L}Q[VP]C{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}[KP]Q[YE][PG];[DG]{I|L}S{I|L}QM[PA]{M(Oxidation (M))|F};{I|L}[DG]S{I|L}QM[PA]{M(Oxidation (M))|F};[DG]{I|L}S{I|L}[AG][VP]C{M(Oxidation (M))|F};VWS{I|L}[DN]MT{I|L};V{[DA]|[EG]}S{I|L}QM[PA]{M(Oxidation (M))|F} 2.8171;2.6801;2.5907;2.0315;2.0052;2;1.9105;1.8296;1.7124;1.3513 -;-;-;-;-;-;-;-;-;- 685 + NaN NaN 151746.3 NaN 18656 4165 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22825 91.053 NaN 1522600 35 0 63650 0.327 -1 0 113 633.3692585006554 1264.7239640681107 2 633.3690795898438 MULTI HCD FTMS 0 0 0 22824 1914752.25 0.6009117937215579 -7 0.20658111572265625 1 NaN NaN 1 Q 1 -1 9.732 0 0 0.76949 0 0 766.4564270034041 367.19706265240535 1133.6534896558094 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.76949 - 191 + NaN NaN 319917.3 NaN 18657 4166 22824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22826 91.058 NaN 2626600 35 0 416710 0.262 + 27630 TAISLFYEL 9 88 528.7842518804308 1055.5539508276615 2 528.7755126953125 MULTI HCD FTMS 0 0 0 22824 441295.8125 0.00327593661126478 39 -1.0486907958984375 2 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 1 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 84.619 0 0 8.0166 8.0166 96.123 0 0 0 7.147642715192504 47.83645560927063 7.147642715192504 46.23326587594944 0 2.4604093769761874 0 1.8411290632962718 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}EY{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}{I|L}S[TA]{I|L};[TA]{I|L}S[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[YE]{M(Oxidation (M))|F}{I|L}{I|L}S[TA]{I|L};[TA]{I|L}S[YE]{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[KP]C[KP]KN;[TA]{I|L}[RP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KN;[TA]{I|L}S[RP][HQ]{M(Oxidation (M))|F} 8.0166;3.6366;2.9998;2.4191;2.2809;2.0854;2.0482;1.9286;1.7009;1.4827 +;-;-;-;-;-;-;-;-;- + 1242 NaN NaN 479325.3 NaN 18658 4166 22824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22827 91.062 NaN 1587100 35 0 132820 0.261 + 10135 IFLSQPILL 9 110 522.3284998333158 1042.6424467334316 2 522.3287353515625 MULTI HCD FTMS 0 0 0 22824 229796.703125 0.7727431883532849 -3 0.0950469970703125 3 Unmodified _IFLSQPILL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 56.17704186161178 0.022929533404884107 1 [Y{I|L}]{I|L}AQ[{I|L}P]{I|L}{I|L} 9 2 + 44.915 0 0 4.3078 4.3078 84.089 0 0 0 13.609629357608839 12.675140341751955 12.675140341751955 8.578960814854895 0 1.1505149978319906 2 0 0.5283773187068795 [Y{I|L}]{I|L}AQ[{I|L}P]{I|L}{I|L};[Y{I|L}]VVN[{I|L}P]{I|L}{I|L};[Y{I|L}]{I|L}A[AG][{I|L}P]{I|L}{I|L};[Y{I|L}]{[HG]|PP}T{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L};[Y{I|L}]{[HG]|PP}{I|L}[KS]{I|L}{I|L};[Y{I|L}]{I|L}A[VP]AA{I|L}{I|L};[Y{I|L}]{I|L}{[HG]|PP}[KS]{I|L}{I|L} 4.3078;3.485;2.9179;2.2067;2.1511;2.1496;1.8623 -;-;-;-;-;-;- 1814 NaN NaN 325386.7 NaN 18659 4166 22824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22828 91.065 NaN 901400 35 0 175540 0.261 + 19481 NPYFEFVL 8 74 514.7581357244944 1027.5017185157888 2 514.7581176757812 MULTI HCD FTMS 0 0 0 22824 432369.1875 1 0 0 4 Unmodified _NPYFEFVL_ ENSG00000069248|ENST00000261396|NUP133 21.74664581756881 0.4337896562907935 1 VA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AV{M(Oxidation (M))|F} 8 6 36.631 0 0 3.565 0 0 165.03915738394204 0 165.03915738394204 0 2.690775249321078 0 0 0 0 0 0 0 VA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AV{M(Oxidation (M))|F} 3.565 - 497 + NaN NaN 216316.5 NaN 18660 4166 22824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22829 91.068 NaN 210800 35 0 14333 0.261 + -1 MPHLLVKSFSL 11 69 644.3602717404614 1286.7059905477226 2 644.3602905273438 MULTI HCD FTMS 0 0 0 22824 123829.28125 0.48246765442245204 -3 0.0950469970703125 5 Oxidation (M) _M(Oxidation (M))PHLLVKSFSL_ REV__VARS2|p.P641S|1|0.08|ENSG00000137411|chr6:30922230-30922230|C/T|missense_variant 2.9952420565917617 0.40578455234410343 1 D 1 -1 5.4846 0 0 0.42625 0 0 546.324900315104 622.3275939732312 1168.6524942883352 0 0 0 0 0 0 0 0 0 D 0.42625 - 14 + NaN NaN 125414.1 NaN 18661 4166 22824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22830 91.071 NaN 158620 35 0 19051 0.262 + -1 TIMPFGMIF 9 51 544.7608360629164 1087.5071191926327 2 544.762451171875 MULTI HCD FTMS 0 0 0 22824 49249.796875 0.7846704339466957 -1 0.0394134521484375 6 2 Oxidation (M) _TIM(Oxidation (M))PFGM(Oxidation (M))IF_ REV__ENSG00000165970|ENST00000525748|SLC6A5;REV__nc|ENSG00000165970|Q9Y345-2|SLC6A5;REV__nc|ENSG00000165970|Q9Y345-3|SLC6A5 12.531546534597751 0.2520865569484384 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 33.812 0 0 3.1092 0 0 662.3072118213421 0 662.3072118213421 0 1.8740810491244986 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.1092 + + 19 + NaN NaN 104847 NaN 18662 4166 22824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22832 91.076 NaN 838430 35 0 39511 0.327 -1 0 115 641.8824831880886 1281.750413442977 2 641.8824462890625 MULTI HCD FTMS 0 0 0 22831 835025.6875 0.42825687185288164 -11 0.29814910888671875 1 NaN NaN 1 ND 2 -1 10.49 0 0 0.81838 0 0 123.08908704816629 926.5161837213499 1049.6052707695162 0 0 0 0 0 0.2614393726401688 0 0.3807196863200844 0 ND 0.81838 - 201 + NaN NaN 215375.7 NaN 18663 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22833 91.081 NaN 836310 35 0 130990 0.262 -1 LYMKNGQGF 9 92 537.2581196834011 1072.5016864336021 2 537.2582397460938 MULTI HCD FTMS 0 0 0 22831 385586.0625 0.27487365450907375 4 -0.1212310791015625 2 Oxidation (M) _LYM(Oxidation (M))KNGQGF_ ENSG00000116473|ENST00000369709|RAP1A;ENSG00000127314|ENST00000250559|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}SR 3 -1 27.065 0 0 2.5235 0 0 664.2886386948765 0 664.2886386948765 0 3.041586590187677 0 0 0 0 0 0.3252574989159953 0 {M(Oxidation (M))|F}SR 2.5235 - 315 NaN NaN 207300 NaN 18664 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22834 91.084 NaN 835910 35 0 288600 0.263 -1 0 49 405.11870980179765 808.2228666703953 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22831 330038.4375 0.3176128090357057 18 -0.49584197998046875 3 NaN NaN 1 V 1 -1 0.088644 0 0 0.010968 0 0 422.05198151590156 284.07526115774306 706.1272426736446 0 0 0 0 0 0 0 0 0 V 0.010968 - 4 + NaN NaN 208250.8 NaN 18665 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22835 91.088 NaN 850990 35 0 65987 0.261 + 23020 RAYSDFKML 9 107 565.7881544678314 NaN 0 565.7689819335938 PEAK HCD FTMS 0 0 0 22831 12578.1328125 0.2842738229702641 -1 0.02288818359375 4 Unmodified _RAYSDFKML_ REV__ENSG00000169220|ENST00000408923|RGS14;REV__ENST00000425155.6_1_5:176794318-176794990:+|nuORF;REV__ENST00000512000.1_1_5:176794318-176794990:+|nuORF;REV__ENST00000514713.5_1_5:176793951-176795930:+|nuORF;REV__nc|ENSG00000169220|O43566-4|RGS14;REV__nc|ENSG00000169220|O43566-5|RGS14 19.256988751693697 0.19238547928067054 1 GVGS{M(Oxidation (M))|F}SW 7 -1 37.095 0 0 3.284 0 0 205.14123705890648 201.06687341861564 406.20811047752215 0 0 0 0 0 0 0 0.5649093276264391 0 GVGS{M(Oxidation (M))|F}SW 3.284 - 3494 + NaN NaN 213063.7 NaN 18666 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22836 91.091 NaN 319180 35 0 29010 0.261 + -1 YSGLMFSCGF 10 85 584.742749955337 1167.470946977474 2 585.260498046875 MULTI HCD FTMS 0 0 0 22831 29199.78515625 1 0 0 5 Carbamidomethyl (C) _YSGLMFSC(Carbamidomethyl (C))GF_ REV__ENSG00000100567|ENST00000216455|PSMA3;REV__ENST00000554812.5_1_14:58714534-58734239:+|nuORF;REV__ENST00000555743.1_1_14:58711638-58734239:+|nuORF 6.723162845929126 0.4397169348982109 1 {I|L}Q{M(Oxidation (M))|F}VD{[QC]|[C(Carbamidomethyl (C))A]} 7 -1 30.221 0 0 2.5886 0 0 316.10289199043126 0 316.10289199043126 0 -5.911290632962718 -5.911290632962718 0 0 0 0 0 0 {I|L}Q{M(Oxidation (M))|F}VD{[QC]|[C(Carbamidomethyl (C))A]} 2.5886 - 782 NaN NaN 142311.3 NaN 18667 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22837 91.094 NaN 458540 35 0 116510 0.261 + 33224 YFEELITML 9 68 587.7887125399347 1173.5628721466694 2 587.7887573242188 MULTI HCD FTMS 0 0 0 22831 225733.296875 0.6880877613050401 8 -0.23400115966796875 6 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 52.268347100219714 0.028397529699942435 1 {[QN]|[E{I|L}]|[KN]}H{I|L}A{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F}{I|L} 10 6 + 42.062 0 0 3.5841 3.5841 82.461 0 0 0 3.1728747786933553 15.863650028014433 3.1728747786933553 6.721675119240508 0 0.9247425010840047 0 0.7742275032520141 0 {[QN]|[E{I|L}]|[KN]}H{I|L}A{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}C(Carbamidomethyl (C))D;{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[CG]D;{[QN]|[E{I|L}]|[KN]}H[CS][KP]T{M(Oxidation (M))|F}{I|L} 3.5841;3.0113;2.2267;2.2234 -;-;-;- 243 NaN NaN 166867.5 NaN 18668 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22838 91.098 NaN 375960 35 0 24111 0.264 -1 0 86 422.58167378528765 1264.723191956063 3 422.5818176269531 MULTI HCD FTMS 0 0 0 22831 279005.46875 0.6469439345811059 -10 0.28188323974609375 7 NaN NaN 1 V 1 -1 8.8515 0 0 0.69988 0 0 894.5033527160457 268.1239412897094 1162.6272940057552 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.69988 - 15 + NaN NaN 153644.2 NaN 18669 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22839 91.101 NaN 238000 35 0 66239 0.261 + 21081 PMYGGAAF 8 50 407.183277809756 812.3520026863121 2 407.1834716796875 MULTI HCD FTMS 0 0 0 22831 111224.7890625 0.7515401883773938 1 -0.03618621826171875 8 Unmodified _PMYGGAAF_ REV__ENSG00000157637|ENST00000374759|SLC38A10;REV__nc|ENSG00000157637|Q9HBR0-2|SLC38A10;REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.4504 0 0 647.2727465601387 0 647.2727465601387 0 5.545611563368826 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4504 + + 13 + NaN NaN 119091.6 NaN 18670 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22840 91.104 NaN 349660 35 0 13570 0.261 + 1723 CIQIWPSSLIK 11 83 644.3602717404614 1286.7059905477226 2 644.8622436523438 MULTI HCD FTMS 0 0 0 22831 54812.77734375 0.24966404413992418 -10 0.28188323974609375 9 Unmodified _CIQIWPSSLIK_ REV__ENSG00000138109|ENST00000260682|CYP2C9 5.296884461304476 0.39569033063702824 1 N 1 -1 7.8567 0 0 0.6106 0 0 106.06557365856277 1063.5483947483308 1169.6139684068935 0 0 0 0 0 0.3252574989159953 0 0 0 N 0.6106 - 160 + NaN NaN 132947.4 NaN 18671 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22841 91.108 NaN 117010 35 0 11849 0.261 + 15926 LPNLEDIYTSL 11 52 639.3345541929871 1276.654555452774 2 639.3338012695312 MULTI HCD FTMS 0 0 0 22831 61712.12109375 0.43847002485670483 -2 0.0623016357421875 10 Unmodified _LPNLEDIYTSL_ ENSG00000198646|ENST00000359003|NCOA6 17.41995326900377 0.3053017877930703 1 D{I|L}YTS{I|L} 6 5 53.365 0 0 4.1801 0 0 566.3073597638687 0 566.3073597638687 0 48.76078152608656 0 0 0 1.5 0 0.5 0 + D{I|L}YTS{I|L} 4.1801 + + 58 NaN NaN 124361.5 NaN 18672 4167 22831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22843 91.113 NaN 1890100 35 0 192650 0.327 + 26735 SYDVFQLEF 9 101 574.2689788586981 1146.5234047841961 2 574.2692260742188 MULTI HCD FTMS 0 0 0 22842 1187253.625 0.5710071837390059 5 -0.1404571533203125 1 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 136.39213081522345 0.00021731600835925866 1 {[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 9 0 + 91.213 0 0 7.9556 7.9556 91.347 0 0 0 2.632192780232785 57.61561899423568 2.632192780232785 9.208187539523749 0 3.0356668758921828 0 1.8283409326844267 0 + + {[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[VS]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};[VS]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{I|L}E{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}YQ{M(Oxidation (M))|F}V{I|L}E{M(Oxidation (M))|F} 7.9556;7.1525;6.8376;6.1918;6.0499;6.0344;5.3887;5.2468;4.5869;4.2905 +;-;-;-;-;-;-;-;-;- + 5806 NaN NaN 386024 NaN 18673 4168 22842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22844 91.117 NaN 454420 35 0 37498 0.261 -1 0 76 611.3564525007829 1220.6983520683657 2 611.3565063476562 MULTI HCD FTMS 0 0 0 22842 323873.1875 0.09492308146592832 55 -1.4544525146484375 2 NaN NaN 1 MST{[HG]|PP}[{M(Oxidation (M))|F}V] 7 -1 13.478 0 0 1.1041 0 0 443.3031483380875 0 443.3031483380875 0 3.8734976887906925 0 0 0 0.6549471895720984 0 0.3494850021680094 0 MST{[HG]|PP}[{M(Oxidation (M))|F}V] 1.1041 - 56 NaN NaN 159985 NaN 18674 4168 22842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22845 91.121 NaN 342670 35 0 14280 0.261 + 1846 CVCVCFRSPF 10 89 580.7575884569756 1159.500623980751 2 581.2582397460938 MULTI HCD FTMS 0 0 0 22842 100250.3984375 0.7233014770803629 -1 0.03618621826171875 3 Unmodified _CVCVCFRSPF_ REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF 32.78568957990786 0.20801173326193015 1 [YV]VGS{M(Oxidation (M))|F}S{[CP]|[EA]}CV 11 -1 + 88.069 0 0 7.5954 7.5954 92.038 0 0 0 22.440717038406362 12.05121963068089 12.05121963068089 10.823198202617974 0 2.385151878060192 1.6989700043360187 1.2447026752325154 0 [YV]VGS{M(Oxidation (M))|F}S{[CP]|[EA]}CV;[YV]RS{M(Oxidation (M))|F}S{[CP]|[EA]}CV;[YV]RS{M(Oxidation (M))|F}S{M(Oxidation (M))|F}A[PS];[YV]VGS{M(Oxidation (M))|F}SEE[SG];{[DS]|[MA]|[CV]|TT}A{M(Oxidation (M))|F}S{M(Oxidation (M))|F}SGVP{M(Oxidation (M))|F};[YV]V[YQ]S{[CP]|[EA]}CV;Q[YE]S{M(Oxidation (M))|F}SRP{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}A{M(Oxidation (M))|F}AYSGVP{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}A{M(Oxidation (M))|F}S{M(Oxidation (M))|F}V[VS]CV;{[DS]|[MA]|[CV]|TT}A{M(Oxidation (M))|F}S{M(Oxidation (M))|F}A[{I|L}T]CV 7.5954;6.6619;6.556;6.2629;5.66;5.4111;5.0703;4.9692;4.8099;4.8099 -;-;-;-;-;-;-;-;-;- 5478 NaN NaN 133132.5 NaN 18675 4168 22842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22846 91.124 NaN 215210 35 0 10985 0.261 -1 QEGGCTACKCS 11 72 600.7246100771383 1199.4346672210766 2 600.7246704101562 MULTI HCD FTMS 0 0 0 22842 66944.3984375 0.35171863011993815 5 -0.1404571533203125 4 2 Carbamidomethyl (C) _QEGGCTAC(Carbamidomethyl (C))KC(Carbamidomethyl (C))S_ LAMA2|p.E1015K|1|0.47|ENSG00000196569|chr6:129300741-129300741|G/A|missense_variant 2.498486711656943 0.4079631525365919 1 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NN 8 -1 35.597 0 0 2.9678 0 0 0 160.90058453968905 160.90058453968905 18.13608784304506 0 0 0 0 0 1.6989700043360187 0.3494850021680094 0.3252574989159953 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NN 2.9678 - 203 NaN NaN 114343.4 NaN 18676 4168 22842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22847 91.127 NaN 190670 35 0 16945 0.261 -1 MPATVFMLF 9 59 544.7608360629164 1087.5071191926327 2 544.7610473632812 MULTI HCD FTMS 0 0 0 22842 53830.328125 0.8576495662823334 1 -0.0228271484375 5 2 Oxidation (M) _M(Oxidation (M))PATVFM(Oxidation (M))LF_ ENSG00000109133|ENST00000504986|TMEM33 28.486842064014134 0.11819662193267319 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 -1 46.983 0 0 4.3202 0 0 515.2405919482952 0 515.2405919482952 0 15.784634594678266 0 0 0 1.805462187404089 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.3202 + + 217 + NaN NaN 134540.2 NaN 18677 4168 22842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22848 91.131 NaN 363500 35 0 20034 0.261 + -1 IFHVCYIL 8 74 532.7848204664269 1063.5550879996538 2 532.785400390625 MULTI HCD FTMS 0 0 0 22842 98655.234375 0.4849320074394896 5 -0.1404571533203125 6 Carbamidomethyl (C) _IFHVC(Carbamidomethyl (C))YIL_ REV__ENSG00000197386|ENST00000355072|HTT 11.114462752807354 0.5120171699125776 1 {M(Oxidation (M))|F}{I|L}YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 26.911 0 0 2.5303 0 0 165.12866234689392 0 165.12866234689392 0 16.10924374808178 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5303 - 376 + NaN NaN 154433.4 NaN 18678 4168 22842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22850 91.135 NaN 3523700 35 0 472460 0.327 -1 0 109 518.8104337936392 1035.6063146540782 2 518.8106079101562 MULTI HCD FTMS 0 0 0 22849 2871646 1 0 0 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.1378 0 0 870.5276688794673 0 870.5276688794673 0 0.06106149832854513 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1378 - 268 + NaN NaN 630890.1 NaN 18679 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22851 91.14 NaN 812400 35 0 49156 0.261 + 4465 EYINFLENL 9 109 577.790189445472 1153.565825957744 2 577.7901611328125 MULTI HCD FTMS 0 0 0 22849 303052.90625 0.3252109075261109 6 -0.17498779296875 2 Unmodified _EYINFLENL_ ENSG00000181381|ENST00000682922|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF;nc|ENSG00000181381|Q5H9U9-2|DDX60L 104.48436234954404 0.0038428467764084714 1 [YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L} 9 3 + 85.147 0 0 7.3812 7.3812 88.938 0 0 0 16.43864505350828 11.394615430168997 11.394615430168997 7.486964716146787 0 1.610924374808178 1.6989700043360187 1.2416440611282626 0.6989700043360187 [YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}DQ{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}EGG{I|L};[YV][AG]E{M(Oxidation (M))|F}{I|L}EN{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}D[AG]{I|L};[YV][AG]E{M(Oxidation (M))|F}{I|L}DQ{I|L};[YV]PS[YG]{I|L}EN{I|L};{[QN]|[E{I|L}]|[KN]}YN{M(Oxidation (M))|F}{I|L}EN{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}DQ{I|L} 7.3812;6.7321;6.5829;6.3452;5.9561;5.9339;5.6962;5.4132;5.3376;5.3071 -;-;-;-;+;-;-;-;-;- + 5561 NaN NaN 205841.8 NaN 18680 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22852 91.143 NaN 367730 35 0 35933 0.261 + 30778 VPQTPCQATLN 11 79 586.2950770220765 NaN 0 586.3062133789062 PEAK HCD FTMS 0 0 0 22849 17097.57421875 0.6890973631390496 1 -0.036102294921875 3 Unmodified _VPQTPCQATLN_ REV__ENSG00000235268|ENST00000450979|KDM4E 13.614867670302875 0.3034986847640154 1 EV{I|L} 3 -1 17.945 0 0 1.533 0 0 131.06771038191874 695.2878512018186 826.3555615837374 0 0 0 0 0 0 0 0.3252574989159953 0 EV{I|L} 1.533 - 161 + NaN NaN 140841.6 NaN 18681 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22853 91.147 NaN 350570 35 0 69172 0.261 + 17477 LYSTDFIVF 9 69 552.7844409883655 NaN 0 552.7842407226562 PEAK HCD FTMS 0 0 0 22849 270939.59375 0.9685632709346574 1 -0.036102294921875 4 Unmodified _LYSTDFIVF_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant 53.57557251787612 0.037462444036765755 1 {M(Oxidation (M))|F}{I|L}V 3 6 36.198 0 0 3.2801 0 0 579.252279338256 162.05603967838127 741.3083190166373 0 0 0 0 0 2 0 0 0 + {M(Oxidation (M))|F}{I|L}V 3.2801 + + 65 + NaN NaN 133683.8 NaN 18682 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22854 91.15 NaN 528100 35 0 61177 0.261 + 29290 TYLSIFDQL 9 73 550.2876101273538 1098.5606673215075 2 550.287353515625 MULTI HCD FTMS 0 0 0 22849 324018.6875 0.904378797029259 -5 0.1441497802734375 5 Unmodified _TYLSIFDQL_ ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF 110.5527297667825 0.0028521687250969148 1 [YT]{I|L}S{I|L}{M(Oxidation (M))|F}DQ{I|L} 9 0 + 97.903 0 0 8.9119 8.9119 92.845 0 0 0 9.688105454342804 16.478174818886373 9.688105454342804 9.208187539523749 0 2.305462187404089 1.3979400086720375 1.579689690656103 0 + + [YT]{I|L}S{I|L}{M(Oxidation (M))|F}DQ{I|L};[YT]{I|L}S{I|L}{M(Oxidation (M))|F}D[AG]{I|L};[Y{I|L}]TS{I|L}{M(Oxidation (M))|F}DQ{I|L};[Y{I|L}]TS{I|L}{M(Oxidation (M))|F}D[AG]{I|L};[YT]{I|L}S{I|L}GS[{M(Oxidation (M))|F}V]{I|L};[YT]{I|L}SG{I|L}S[{M(Oxidation (M))|F}V]{I|L};[YT]{I|L}S{I|L}EK[{M(Oxidation (M))|F}V];[Y{I|L}]TS{I|L}EK[{M(Oxidation (M))|F}V];[Y{I|L}]TS{I|L}GS[{M(Oxidation (M))|F}V]{I|L};[Y{I|L}]TSG{I|L}S[{M(Oxidation (M))|F}V]{I|L} 8.9119;8.0737;8.03;7.1918;6.4302;6.3797;6.137;5.9883;5.5483;5.4979 +;-;-;-;-;-;-;-;-;- + 904 NaN NaN 155932.8 NaN 18683 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22855 91.153 NaN 137500 35 0 5595.3 0.261 + 23096 RERHLKKVG 9 74 561.8457648596961 1121.6769767861922 2 561.845947265625 MULTI HCD FTMS 0 0 0 22849 122927.921875 0.5379989297992775 5 -0.15221405029296875 6 Unmodified _RERHLKKVG_ ENSG00000099364|ENST00000338343|FBXL19;ENST00000471231.6_1_16:30937150-30941463:+|nuORF;nc|ENSG00000099364|Q6PCT2-3|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19 2.0597508629832335 0.3354026079994024 1 [YT]{I|L}RV 5 7 29.252 0 0 2.6079 0 0 0 486.2942612923047 486.2942612923047 8.282957030980711 0 0 0 0 0 1.6989700043360187 0 0 [YT]{I|L}RV 2.6079 - 107 NaN NaN 117106.6 NaN 18684 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22856 91.157 NaN 243780 35 0 11736 0.263 -1 0 70 437.2571673314201 1308.7496725944602 3 437.257568359375 MULTI HCD FTMS 0 0 0 22849 204264.1875 1 0 0 7 NaN NaN 1 Q 1 -1 7.4743 0 0 0.5711 0 0 722.4305330454353 455.24872766666255 1177.6792607120979 0 0 0 0 0 0.5 0 0 0 Q 0.5711 - 13 + NaN NaN 125381.7 NaN 18685 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22857 91.16 NaN 321820 35 0 11500 0.261 -1 MWSSFLCIT 9 95 580.7575884569756 1159.500623980751 2 581.762451171875 MULTI HCD FTMS 0 0 0 22849 140792.859375 1 0 0 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))WSSFLC(Carbamidomethyl (C))IT_ ENST00000314891.10_1_15:34654487-34657250:-|nuORF 28.486842064014134 0.11819662193267319 1 [YV]GVS{M(Oxidation (M))|F}SC(Carbamidomethyl (C)) 8 -1 63.097 0 0 5.4417 0 0 0 257.1031990142073 257.1031990142073 33.63789647121287 0 0 0 0 0.4247425010840047 1.6989700043360187 1.4604093769761874 0 [YV]GVS{M(Oxidation (M))|F}SC(Carbamidomethyl (C)) 5.4417 - 3433 NaN NaN 129601.3 NaN 18686 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22858 91.163 NaN 236030 35 0 13435 0.261 + -1 MAVSILMKRL 10 105 589.3429652941128 1176.6713776550255 2 589.34326171875 MULTI HCD FTMS 0 0 0 22849 89067.296875 0.3143873670295788 7 -0.19449615478515625 9 Oxidation (M) _M(Oxidation (M))AVSILMKRL_ REV__ENSG00000204922|ENST00000377953|UQCC3 3.2813086475875832 0.45793521633868084 1 W 1 -1 13.495 0 0 1.1469 0 0 972.581592964399 0 972.581592964399 0 0.964423882439327 0 0 0 0 0 0 0 W 1.1469 - 319 + NaN NaN 123791.6 NaN 18687 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22859 91.167 NaN 108260 35 0 8068.7 0.262 + 20891 PIYDKLNL 8 54 488.2786105560518 974.5426681789036 2 488.278564453125 MULTI HCD FTMS 0 0 0 22849 50592.23828125 0.8067347798227809 1 -0.036102294921875 10 Unmodified _PIYDKLNL_ tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1 5.760428011301431 0.5334459684533844 1 PE 2 7 9.464 0 0 0.97112 0 0 113.15322716305509 632.2721041315061 745.4253312945613 0 0 0 0 0 0 0 0 0 PE 0.97112 - 21 + NaN NaN 109437.1 NaN 18688 4169 22849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22861 91.171 NaN 4411400 35 0 1559700 0.327 + 22703 QYAPLLAVF 9 58 511.2895860614661 1020.5646191897322 2 511.28985595703125 MULTI HCD FTMS 0 0 0 22860 2584321.5 0.6472444846584385 1 -0.02611541748046875 1 Unmodified _QYAPLLAVF_ ENSG00000136261|ENST00000258761|BZW2 89.42679046578446 0.004540987215715461 1 [YQ]A[{I|L}P]{I|L}AV{M(Oxidation (M))|F} 9 0 + 67.686 0 0 6.6322 6.6322 94.385 0 0 0 4.628618393527404 40.022431204052324 4.628618393527404 67.68623129393987 0 2.305462187404089 0 0 1.3539171939081172 + + [YQ]A[{I|L}P]{I|L}AV{M(Oxidation (M))|F} 6.6322 + + 187 NaN NaN 416425.1 NaN 18689 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22862 91.176 NaN 421980 35 0 128710 0.261 + 10618 IPQLLEAVL 9 39 498.31044643002224 994.6063399268445 2 498.310546875 MULTI HCD FTMS 0 0 0 22860 238524.96875 0.3887576358023786 1 -0.02611541748046875 2 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 27.628801355627647 0.12213550946336599 1 EAV{I|L} 4 5 50.745 0 0 5.1021 0 0 564.3634625800494 0 564.3634625800494 0 45.26084705832169 0 0 0 1.5 0 0.3807196863200844 0 + EAV{I|L} 5.1021 + + 26 NaN NaN 145792.1 NaN 18690 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22863 91.179 NaN 451380 35 0 33376 0.261 + 17176 LYLVTSLSF 9 81 521.7940394999271 1041.573526066654 2 522.2803955078125 MULTI HCD FTMS 0 0 0 22860 18442.41015625 0.04912295790301149 7 -0.19786834716796875 3 Unmodified _LYLVTSLSF_ REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|53|1|anti-sense 30.224811164608877 0.11021837014094292 1 [Y{I|L}]{I|L}[YK]ET{I|L} 8 -1 + 44.377 0 0 4.2606 4.2606 86.913 0 0 0 4.054556341805764 28.892522010455792 4.054556341805764 13.02378753635658 0 1.055462187404089 1.5228787452803376 0 0 [Y{I|L}]{I|L}[YK]ET{I|L};{I|L}Y[YK]TE{I|L}{I|L};[Y{I|L}]{[HG]|PP}[{I|L}P]ET{I|L};[Y{I|L}]VV[HQ]{[{M(Oxidation (M))|F}H]|[RQ]};{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}P]NTE{I|L}{I|L} 4.2606;3.0102;2.7725;0.70913;0.10655 -;-;-;-;- 263 NaN NaN 153657 NaN 18691 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22864 91.183 NaN 596180 35 0 170400 0.261 + 3120 EAMYHTTLL 9 72 539.7657522386556 1077.5169515441112 2 539.766357421875 MULTI HCD FTMS 0 0 0 22860 281627.3125 0.8130086449570242 1 -0.02611541748046875 4 Unmodified _EAMYHTTLL_ REV__ENSG00000141338|ENST00000586539|ABCA8;REV__ENSG00000154258|ENST00000340001|ABCA9;REV__nc|ENSG00000141338|O94911-1|ABCA8 15.847184025352803 0.2234401846867398 1 [DG]{I|L}S{I|L}Q[VP]C{M(Oxidation (M))|F} 10 -1 + 37.101 0 0 3.4432 3.4432 81.188 0 0 0 3.974315640635595 7.538012203482296 3.974315640635595 3.974315640635595 0 0.4247425010840047 0 0 0 [DG]{I|L}S{I|L}Q[VP]C{M(Oxidation (M))|F};{I|L}[DG]S{I|L}Q[VP]C{M(Oxidation (M))|F};V{[DA]|[EG]}S{I|L}Q[VP]C{M(Oxidation (M))|F};VWS{I|L}{M(Oxidation (M))|F}Y[YT];[DG]{I|L}S{I|L}[AG][VP]C{M(Oxidation (M))|F};{I|L}[DG]S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];[DG]{I|L}S{I|L}Q{[{M(Oxidation (M))|F}C]|[YS]}[VP];[DG]{I|L}S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];V{[DA]|[EG]}S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];{I|L}[DG]S{I|L}Q{[{M(Oxidation (M))|F}C]|[YS]}[VP] 3.4432;3.0743;2.8844;2.7436;2.5926;1.0347;0.98197;0.93951;0.84479;0.61313 -;-;-;-;-;-;-;-;-;- 418 + NaN NaN 173304.3 NaN 18692 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22865 91.186 NaN 633490 35 0 55829 0.261 + 2194 DIHVTCEVL 9 61 514.7581357244944 1027.5017185157888 2 515.2772827148438 MULTI HCD FTMS 0 0 0 22860 42106.9609375 0.14719847490359722 2 -0.05197906494140625 5 Unmodified _DIHVTCEVL_ REV__ENST00000463943.1_1_20:49457108-49457342:+|nuORF 15.847184025352803 0.2234401846867398 1 EV{I|L}EYV{M(Oxidation (M))|F} 7 -1 35.17 0 0 3.4228 0 0 130.0595060845796 0 130.0595060845796 0 1.5644329399135302 0 0 0 0 0 0 0 EV{I|L}EYV{M(Oxidation (M))|F} 3.4228 - 408 + NaN NaN 166784.4 NaN 18693 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22866 91.189 NaN 553360 35 0 83163 0.261 -1 MRHLHQVL 8 69 525.2869224129051 1048.5592918926102 2 525.28662109375 MULTI HCD FTMS 0 0 0 22860 323339.4375 0.3953263979313001 -8 0.2459259033203125 6 Oxidation (M) _M(Oxidation (M))RHLHQVL_ ENSG00000121289|ENST00000305768|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89 13.50788311687929 0.4944073034352369 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 -1 38.175 0 0 3.6407 0 0 524.2814198224625 0 524.2814198224625 0 16.74865027867405 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.6407 - 695 NaN NaN 165578 NaN 18694 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22867 91.193 NaN 333030 35 0 49314 0.261 + 26724 SYDPLVIYL 9 63 541.7920773438582 1081.5696017545163 2 541.7920532226562 MULTI HCD FTMS 0 0 0 22860 79004.015625 0.5128746185714267 1 -0.02611541748046875 7 Unmodified _SYDPLVIYL_ ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5 36.04419817259434 0.08350412372117409 1 V{I|L}Y{I|L} 4 5 40.42 0 0 3.7371 0 0 575.2577992169937 0 575.2577992169937 0 24.93501263708417 0 0 0 1.3252574989159953 0 0 0 + V{I|L}Y{I|L} 3.7371 + + 114 NaN NaN 130848.6 NaN 18695 4170 22860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22869 91.198 NaN 1628300 35 0 83003 0.327 -1 0 108 633.3692585006554 1264.7239640681107 2 633.3692626953125 MULTI HCD FTMS 0 0 0 22868 1580723.75 0.4960827407257349 -2 0.06221771240234375 1 NaN NaN 1 {[HG]|PP}N 3 -1 9.7936 0 0 0.77437 0 0 0 953.5172130016537 953.5172130016537 1.3380312008851547 0 0 0 0 0.6861818737241735 0 0 0 {[HG]|PP}N 0.77437 - 132 + NaN NaN 311687.7 NaN 18696 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22870 91.202 NaN 2407700 35 0 624950 0.244 + 30511 VMPSSFFLL 9 75 528.7748397343565 1055.535126535513 2 528.7750244140625 MULTI HCD FTMS 0 0 0 22868 603149.875 0.3189729376010879 -2 0.06221771240234375 2 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 89.42679046578446 0.004540987215715461 1 S{I|L}{M(Oxidation (M))|F}YE{I|L} 6 6 53.317 0 0 5.0512 0 0 285.16804701972814 0 285.16804701972814 0 19.18747799658899 0 0 0 0.3807196863200844 0 1.860924374808178 0 S{I|L}{M(Oxidation (M))|F}YE{I|L} 5.0512 - 632 NaN NaN 400752.7 NaN 18697 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22871 91.205 NaN 1026500 35 0 48290 0.261 -1 0 109 633.3692585006554 1264.7239640681107 2 634.3720092773438 MULTI HCD FTMS 0 0 0 22868 397704.75 0.485053484679515 -6 0.18353271484375 3 NaN NaN 1 NS 2 -1 16.198 0 0 1.2807 0 0 1045.596204041724 0 1045.596204041724 0 9.186252728754987 0 0 0 0 0 0 0 NS 1.2807 - 144 NaN NaN 249823.3 NaN 18698 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22872 91.209 NaN 586580 35 0 114310 0.261 + 10058 IFDWVEANL 9 88 553.780007840248 NaN 0 553.79248046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _IFDWVEANL_ ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3 13.90604991867851 0.22786006501039813 1 {I|L}PED 4 7 14.157 0 0 1.2805 0 0 131.06899682943862 517.2329195611936 648.3019163906322 0 0 0 0 0 0 0 0 0 {I|L}PED 1.2805 - 185 + NaN NaN 171527.8 NaN 18699 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22873 91.212 NaN 581990 35 0 45402 0.261 + -1 ITCFPLTEL 9 76 547.2843054778297 1092.5540580224592 2 547.2817993164062 MULTI HCD FTMS 0 0 0 22868 157840.640625 0.5644848652826028 -2 0.06221771240234375 5 Carbamidomethyl (C) _ITC(Carbamidomethyl (C))FPLTEL_ REV__ENST00000557029.5_1_14:59824035-59826179:+|nuORF 48.345845343767074 0.03388484103555672 1 [VP]GY{I|L}{[DS]|[MA]|[CV]|TT}TE{I|L} 10 -1 + 52.936 0 0 4.8452 4.8452 83.975 0 0 0 4.683065105678033 32.301594589017384 4.683065105678033 6.359469618370355 0 0.5 0 1.274227503252014 0 [VP]GY{I|L}{[DS]|[MA]|[CV]|TT}TE{I|L};{I|L}{M(Oxidation (M))|F}T[K{I|L}]{M(Oxidation (M))|F}{I|L}[DP];{[QN]|[E{I|L}]|[KN]}T{M(Oxidation (M))|F}[K{I|L}]TE{I|L};{I|L}{M(Oxidation (M))|F}E[WR]TE{I|L};{[TV]|[{I|L}S]}{[ES]|[DT]|[{I|L}C]}{I|L}{[DS]|[MA]|[CV]|TT}TE{I|L};[VP]GY{I|L}{[DS]|[MA]|[CV]|TT}TNQ;{[ET]|[MV]}{I|L}{M(Oxidation (M))|F}[K{I|L}]TNQ;[VP]GYE[VS]TNK;{[QN]|[E{I|L}]|[KN]}T{M(Oxidation (M))|F}[K{I|L}]TNQ;{[TV]|[{I|L}S]}{[ES]|[DT]|[{I|L}C]}{I|L}{[DS]|[MA]|[CV]|TT}TNQ 4.8452;4.2631;4.1942;4.1371;4.0637;3.6829;3.4687;3.1161;3.032;2.9014 -;-;-;-;-;-;-;-;-;- 882 NaN NaN 192417.8 NaN 18700 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22874 91.215 NaN 235040 35 0 17998 0.261 + 1847 CVCVCFRSPF 10 83 580.7575884569756 1159.500623980751 2 580.7560424804688 MULTI HCD FTMS 0 0 0 22868 205773.03125 1 0 0 6 Unmodified _CVCVCFRSPF_ REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF 32.78568957990786 0.20801173326193015 1 [YV]V[SG]{M(Oxidation (M))|F}S[C(Carbamidomethyl (C))Q]N 10 -1 + 65.965 0 0 5.689 5.689 62.778 0 0 0 3.9480143445786453 3.9480143445786453 3.9480143445786453 0 0 2.1989700043360187 1.3979400086720375 0.6861818737241735 0 [YV]V[SG]{M(Oxidation (M))|F}S[C(Carbamidomethyl (C))Q]N;[YV]V[SG]{M(Oxidation (M))|F}S[C(Carbamidomethyl (C))K]N;VC{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}[SG]VP{M(Oxidation (M))|F};VYV[SG]{M(Oxidation (M))|F}S{[DS]|[MA]|[CV]|TT}{[CP]|[EA]};[YV]VQYS[C(Carbamidomethyl (C))Q]N;[YV]V[SG]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))Q]SN;[YV]V[SG]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K]SN;VC{[MS]|[{M(Oxidation (M))|F}A]}SYQVP{M(Oxidation (M))|F};VYVQYS{[DS]|[MA]|[CV]|TT}{[CP]|[EA]};[YV]V[AG]YS[C(Carbamidomethyl (C))Q]N 5.689;5.689;5.3486;5.067;5.0305;4.8881;4.8881;4.6862;4.4619;4.2363 -;-;-;-;-;-;-;-;-;- 1033 NaN NaN 120622.2 NaN 18701 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22875 91.219 NaN 149520 35 0 7169.7 0.261 -1 FFTDLSDVCV 10 58 601.7713343034086 NaN 0 601.7992553710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _FFTDLSDVC(Carbamidomethyl (C))V_ ENST00000273582.9_2_3:197401673-197401838:-|nuORF 10.073929032068715 0.33156240198919784 1 {I|L}D{I|L}{[MG]|[TS]}{I|L}N 7 -1 9.9654 0 0 0.82939 0 0 166.01341948396708 276.0987948053344 442.1122142893015 0 0 0 0 0 0 0 0 0 {I|L}D{I|L}{[MG]|[TS]}{I|L}N 0.82939 - 233 + NaN NaN 111287.1 NaN 18702 4171 22868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22877 91.223 NaN 1010300 35 0 53878 0.326 -1 0 114 641.8824831880886 1281.750413442977 2 641.882568359375 MULTI HCD FTMS 0 0 0 22876 1165864.625 0.5979331471840893 -6 0.16998291015625 1 NaN NaN 1 W 1 -1 11.42 0 0 0.89097 0 0 1077.6618799730536 0 1077.6618799730536 0 2.128236353584878 0 0 0 0 0 0 0 W 0.89097 - 182 + NaN NaN 238668.2 NaN 18703 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22878 91.228 NaN 1910900 35 0 373850 0.261 + 32347 VYVGSFSWW 9 125 565.7688188934688 1129.5230848537376 2 564.7611083984375 MULTI HCD FTMS 0 0 0 22876 567327.375 0.6321026908401133 3 -0.08690643310546875 2 Unmodified _VYVGSFSWW_ ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7 53.57557251787612 0.02656881086235134 1 [YV]V[SG]T{I|L}E{I|L} 9 4 40.451 0 0 3.5812 0 0 0 164.98257588052311 164.98257588052311 5.369853130822953 0 0 0 0 0 1.0969100130080565 1.5545970543767123 0 [YV]V[SG]T{I|L}E{I|L} 3.5812 - 11917 NaN NaN 370127.5 NaN 18704 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22879 91.231 NaN 584110 35 0 39924 0.261 + 33279 YFLLNAEDY 9 106 574.2689788586981 1146.5234047841961 2 572.7579345703125 MULTI HCD FTMS 0 0 0 22876 168063.9375 0.689870338708944 3 -0.08690643310546875 3 Unmodified _YFLLNAEDY_ ENSG00000077147|ENST00000371142|TM9SF3;ENST00000485093.1_1_10:98286995-98287879:-|nuORF 19.438996006549623 0.19240772610395238 1 [YV]VG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[PS]C 10 8 28.454 0 0 2.4818 0 0 0 117.0820584581974 117.0820584581974 0.5124374737730264 0 0 0 0 0 1.5228787452803376 1.1307196863200843 0 [YV]VG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[PS]C 2.4818 - 2260 NaN NaN 177234.3 NaN 18705 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22880 91.235 NaN 472320 35 0 151680 0.264 -1 0 42 405.11870980179765 808.2228666703953 2 405.1189880371094 MULTI HCD FTMS 0 0 0 22876 179369.15625 0.1726160807282543 23 -0.599945068359375 4 NaN NaN 1 V 1 -1 0.9691 0 0 0.11991 0 0 422.05271393777656 284.0749530792899 706.1276670170664 0 0 0 0 0 0 0 0 0 V 0.11991 - 3 + NaN NaN 156101.6 NaN 18706 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22881 91.238 NaN 147130 35 0 7565.9 0.261 -1 0 72 619.8697049488608 1237.7248569645215 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22876 151208 0.06815033791111562 41 -1.0815963745117188 5 NaN NaN 1 D 1 -1 7.7866 0 0 0.62911 0 0 105.07996479835454 1014.5721529596311 1119.6521177579857 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.62911 - 39 + NaN NaN 99828.2 NaN 18707 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22882 91.241 NaN 515190 35 0 99153 0.261 -1 0 88 553.3324376954826 1104.650322457765 2 553.3323974609375 MULTI HCD FTMS 0 0 0 22876 95880.890625 0.22332337611008846 10 -0.2767791748046875 6 NaN NaN 1 V[WE]{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 7 -1 35.45 0 0 3.2092 0 0 166.17492625611436 0 166.17492625611436 0 18.45995240652323 0 0 0 0.3252574989159953 0 0.6747425010840047 0 V[WE]{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 3.2092 - 511 + NaN NaN 165927.5 NaN 18708 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22883 91.245 NaN 122050 35 0 18561 0.261 + 29040 TYFFFAPIW 9 45 596.3000194678543 NaN 0 596.244384765625 PEAK HCD FTMS 0 0 0 22876 8240.7734375 0.38901412621746817 -1 0.0258636474609375 7 Unmodified _TYFFFAPIW_ REV__ST8SIA3|p.H251Y|1|0.48|ENSG00000177511|chr18:57357361-57357361|C/T|missense_variant 7.910154910731844 0.25691533546754686 1 Q 1 -1 6.9897 0 0 0.58708 0 0 132.0983173663372 927.4036079272819 1059.501925293619 0 0 0 0 0 0 0 0 0 Q 0.58708 - 20 + NaN NaN 114429.5 NaN 18709 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22884 91.248 NaN 93942 35 0 14659 0.264 + -1 FYISWLLCAF 10 52 440.5534976684451 NaN 0 440.55322265625 PEAK HCD FTMS 0 0 0 22876 26115.22265625 1 0 0 8 Carbamidomethyl (C) _FYISWLLC(Carbamidomethyl (C))AF_ REV__ENSG00000162104|ENST00000294016|ADCY9 2.0860074813731053 0.33839895573887124 1 Y 1 -1 5.4846 0 0 0.62389 0 0 345.80772668279025 367.19660364322505 713.0043303260153 0 0 0 0 0 0 0 0 0 Y 0.62389 + + 1 + NaN NaN 86066.8 NaN 18710 4172 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22886 91.253 NaN 2676200 35 0 907210 0.327 + 32348 VYVGSFSWW 9 117 565.7688188934688 1129.5230848537376 2 565.7687377929688 MULTI HCD FTMS 0 0 0 22885 717039.5625 0.48356215424495 4 -0.11634063720703125 1 Unmodified _VYVGSFSWW_ ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7 170.55093314911917 3.526520053928E-09 1 [YV]VGS{M(Oxidation (M))|F}SWW 9 0 + 93.119 0 0 8.2441 8.2441 93.656 0 0 0 0.3127991373843031 0.3127991373843031 0.3127991373843031 12.855443491087826 0 2.912437995416459 1.3010299956639813 0.841129063296272 0 + + [YV]VGS{M(Oxidation (M))|F}SWW;[YV]KD{M(Oxidation (M))|F}SWW;[YV]V[YQ]SWW;{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}T]S{M(Oxidation (M))|F}SWW;{[CT]|[{M(Oxidation (M))|F}G]}WS{M(Oxidation (M))|F}SG[KS]K;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}S[{I|L}T]W;{[CT]|[{M(Oxidation (M))|F}G]}WS{M(Oxidation (M))|F}S[{I|L}T]W;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}SG[KT]N;[YV]Q[YV]SWW;[YG]VVS{M(Oxidation (M))|F}SWW 8.2441;7.106;5.9469;5.1388;5.1322;5.007;4.8294;4.8134;4.7674;4.6372 +;-;-;-;-;-;-;-;-;- + 8454 + NaN NaN 490847.6 NaN 18711 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22887 91.257 NaN 549190 35 0 35244 0.263 -1 0 91 422.58167378528765 1264.723191956063 3 422.5818176269531 MULTI HCD FTMS 0 0 0 22885 344592.34375 0.7990235019081501 -4 0.1176300048828125 2 NaN NaN 1 Q 1 -1 11.237 0 0 0.8885 0 0 678.4040846140559 455.2486971490844 1133.6527817631404 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.8885 - 62 + NaN NaN 181900.5 NaN 18712 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22888 91.261 NaN 670140 35 0 90145 0.261 -1 FPSWAMELL 9 80 555.270183976785 1108.52581502037 2 555.2704467773438 MULTI HCD FTMS 0 0 0 22885 229707.15625 0.600048309959574 4 -0.11634063720703125 3 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 25.399314129420986 0.14091189997036632 1 S{M(Oxidation (M))|F}E{I|L}{I|L} 5 -1 48.377 0 0 4.3641 0 0 501.22606093574376 0 501.22606093574376 0 18.82429542452661 0 0 0 1.2302046884880937 0 0.28872548999643577 0 S{M(Oxidation (M))|F}E{I|L}{I|L} 4.3641 - 548 NaN NaN 181977.6 NaN 18713 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22889 91.264 NaN 372220 35 0 53751 0.261 -1 VYTYCQRY 8 79 576.7599616811749 1151.5053704291497 2 576.7600708007812 MULTI HCD FTMS 0 0 0 22885 115014.0078125 0.45141537667129067 5 -0.1358642578125 4 Carbamidomethyl (C) _VYTYC(Carbamidomethyl (C))QRY_ ENSG00000112902|ENST00000382496|SEMA5A 16.942295170755138 0.46913822049235215 1 VYVGS 5 -1 53.321 0 0 4.6305 0 0 0 643.2331026666624 643.2331026666624 25.291681396006 0 0 0 0 0.805462187404089 1.6989700043360187 0.3494850021680094 0 VYVGS 4.6305 - 209 + NaN NaN 143125.9 NaN 18714 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22890 91.268 NaN 280950 35 0 64234 0.261 -1 YFEELITML 9 46 587.7887125399347 1173.5628721466694 2 587.78955078125 MULTI HCD FTMS 0 0 0 22885 116982.09375 0.35658871825979405 14 -0.3549041748046875 5 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 19.256988751693697 0.19398022840297344 1 {I|L}T{M(Oxidation (M))|F}{I|L} 4 -1 35.165 0 0 2.9964 0 0 681.3013748237062 0 681.3013748237062 0 8.96713777483761 0 0 0 0.9247425010840047 0 0 0 {I|L}T{M(Oxidation (M))|F}{I|L} 2.9964 + + 40 NaN NaN 126255.5 NaN 18715 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22891 91.271 NaN 444650 35 0 51499 0.261 + 18952 NAIEDTIFYL 10 55 599.803324690749 1197.592096448298 2 599.803466796875 MULTI HCD FTMS 0 0 0 22885 160233.078125 0.4306290645014913 -4 0.1176300048828125 6 Unmodified _NAIEDTIFYL_ ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 90.13494162714682 0.000992056157953851 1 EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 7 3 75.75 0 0 6.3252 0 0 298.16380507636876 0 298.16380507636876 0 68.54884443796716 0 0 0 2.5669015600442577 0 1.1989700043360187 0 + EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 6.3252 + + 122 NaN NaN 150592.7 NaN 18716 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22892 91.276 NaN 124940 35 0 14705 0.261 + -1 CVSTAEMYTLS 11 38 639.2718704524611 1276.5291879717222 2 639.3346557617188 MULTI HCD FTMS 0 0 0 22885 21024.3671875 0.6498735748722799 -1 0.02954864501953125 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VSTAEM(Oxidation (M))YTLS_ REV__ENSG00000080224|ENST00000389672|EPHA6;REV__EPHA6|p.R743Lfs*2|1|0.07|ENSG00000080224|chr3:97532385-97532385|G/-|frameshift_variant;REV__nc|ENSG00000080224|Q9UF33|EPHA6 2.735195868890462 0.4069250265843076 1 STY{I|L}[QA]YT{[TV]|[{I|L}S]} 10 -1 33.46 0 0 2.6212 0 0 130.97750447738468 0 130.97750447738468 0 22.97569463554474 0 0 0 0 0 0.5 0 STY{I|L}[QA]YT{[TV]|[{I|L}S]} 2.6212 - 60 + NaN NaN 104786 NaN 18717 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22893 91.279 NaN 145020 35 0 20403 0.261 -1 YFDLLGELM 9 50 558.7677139356587 1115.5208749381172 2 558.7681274414062 MULTI HCD FTMS 0 0 0 22885 77621.3515625 0.8700524823231633 -4 0.1176300048828125 8 Oxidation (M) _YFDLLGELM(Oxidation (M))_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 24.020572477871973 0.15282392193088168 1 {I|L}GE{I|L}{M(Oxidation (M))|F} 5 -1 40.662 0 0 3.6451 0 0 538.2443104474625 0 538.2443104474625 0 26.057743964882718 0 0 0 1.5 0 0 0 {I|L}GE{I|L}{M(Oxidation (M))|F} 3.6451 + + 46 NaN NaN 107118.1 NaN 18718 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22894 91.283 NaN 74792 35 0 18111 0.262 + 25652 SHLPGEEH 8 31 453.20966222015863 NaN 0 453.20977783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 2.577480529830294 0.38822285293237185 1 K 1 8 1.9897 0 0 0.22 0 0 510.2069698487173 263.08979211978755 773.2967619685048 0 0 0 0 0 0 0 0 0 K 0.22 - 1 + NaN NaN 87630.9 NaN 18719 4173 22885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22896 91.288 NaN 910130 35 0 199890 0.326 -1 0 85 611.3564525007829 1220.6983520683657 2 611.3565063476562 MULTI HCD FTMS 0 0 0 22895 65659.0625 0.019243829928539482 61 -1.5942230224609375 1 NaN NaN 1 C 1 -1 5.4846 0 0 0.4493 0 0 674.3733531443407 440.28009828513314 1114.653451429474 0 0 0 0 0 0.3494850021680094 0 0 0 C 0.4493 - 89 + NaN NaN 220490.2 NaN 18720 4174 22895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22897 91.292 NaN 140650 35 0 9815.2 0.261 + -1 PSLCKPLVQFV 11 52 644.3602182684886 1286.705883603777 2 644.3603515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _PSLC(Carbamidomethyl (C))KPLVQFV_ REV__ENSG00000164053|ENST00000320211|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-2|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-3|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP 2.735195868890462 0.4069250265843076 1 P 1 -1 3.9794 0 0 0.30927 0 0 687.3818612422521 499.2471102350219 1186.628971477274 0 0 0 0 0 0 0 0 0 P 0.30927 + + 15 + NaN NaN 104447 NaN 18721 4174 22895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22898 91.296 NaN 172730 35 0 9055.8 0.261 -1 MWSSFLCIT 9 65 580.7575884569756 1159.500623980751 2 581.25830078125 MULTI HCD FTMS 0 0 0 22895 21536.001953125 0.15538114826358732 5 -0.13750457763671875 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))WSSFLC(Carbamidomethyl (C))IT_ ENST00000314891.10_1_15:34654487-34657250:-|nuORF 25.399314129420986 0.14091189997036632 1 [YV]V[SG]{M(Oxidation (M))|F}SW{[ES]|[DT]|[{I|L}C]} 10 -1 + 60.498 0 0 5.2176 5.2176 84.53 0 0 0 17.079017741538934 2.7545373444029053 2.7545373444029053 6.109917611458371 0 1.75 2 0.7134679910804405 0 [YV]V[SG]{M(Oxidation (M))|F}SW{[ES]|[DT]|[{I|L}C]};[YV]V[SG]{M(Oxidation (M))|F}S{[DS]|[MA]|[CV]|TT}{[CP]|[EA]};[YV]V[SG]{M(Oxidation (M))|F}S{[DA]|[EG]}{[ES]|[DT]|[{I|L}C]};[YV]V[SG]{M(Oxidation (M))|F}S{[CP]|[EA]}{[DS]|[MA]|[CV]|TT};[YV]V[YQ]S{[DS]|[MA]|[CV]|TT}{[CP]|[EA]};{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}[SG]V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]V[YQ]S{[DA]|[EG]}{[ES]|[DT]|[{I|L}C]};[YV]V[YQ]S{[CP]|[EA]}{[DS]|[MA]|[CV]|TT};{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}[R{I|L}]{[MS]|[{M(Oxidation (M))|F}A]};{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}[RP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.2176;4.6907;4.4272;4.1687;3.7679;3.7447;3.5044;3.2458;3.0087;2.8982 -;-;-;-;-;-;-;-;-;- 460 NaN NaN 115041.4 NaN 18722 4174 22895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22899 91.299 NaN 230790 35 0 45843 0.262 + 15297 LPALEVLDL 9 47 491.79450611035634 981.5744592875127 2 491.7945861816406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPALEVLDL_ ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1 36.12702656103203 0.08312389501731911 1 EV{I|L}D{I|L} 5 4 54.196 0 0 5.5213 0 0 394.2591135320874 0 394.2591135320874 0 51.096981436199016 0 0 0 1.9247425010840047 0 0 0 + EV{I|L}D{I|L} 5.5213 + + 28 NaN NaN 135177.4 NaN 18723 4174 22895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22900 91.302 NaN 94605 35 0 12963 0.261 + -1 ELCMYLLF 8 43 544.7608360629164 1087.5071191926327 2 544.7611083984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))MYLLF_ REV__ENSG00000129219|ENST00000263088|PLD2;REV__ENST00000575246.6_1_17:4711576-4721404:+|nuORF;REV__nc|ENSG00000129219|O14939-3|PLD2;REV__nc|ENSG00000129219|O14939-4|PLD2 13.50788311687929 0.4944073034352369 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7785 0 0 809.3454415386562 0 809.3454415386562 0 14.018637558036673 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.7785 + + 13 NaN NaN 116095.6 NaN 18724 4174 22895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22901 91.306 NaN 148440 35 0 15412 0.261 + 7868 FYTFPFQQL 9 52 595.7975642779678 1189.5805756227355 2 595.798828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 18.1463463914782 0.20357593197100715 1 YW 2 8 24.464 0 0 2.0565 0 0 822.4290638654312 0 822.4290638654312 0 6.4316712869320725 0 0 0 0.3494850021680094 0 0 0 YW 2.0565 - 76 NaN NaN 111861.9 NaN 18725 4174 22895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22903 91.31 NaN 1152700 35 0 395550 0.327 + 22704 QYAPLLAVF 9 65 511.2895860614661 1020.5646191897322 2 511.28955078125 MULTI HCD FTMS 0 0 0 22902 742105.6875 0.18586070396737933 6 -0.16040802001953125 1 Unmodified _QYAPLLAVF_ ENSG00000136261|ENST00000258761|BZW2 67.34385681178166 0.00994769994983633 1 [YQ]A[{I|L}P]{I|L}AV{M(Oxidation (M))|F} 9 0 + 61.009 0 0 5.978 5.978 93.061 0 0 0 9.729976836075878 47.068715476696354 9.729976836075878 61.00887809210043 0 2.2614393726401687 0 0 0.7302046884880937 + + [YQ]A[{I|L}P]{I|L}AV{M(Oxidation (M))|F} 5.978 + + 176 NaN NaN 265020.5 NaN 18726 4175 22902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22904 91.315 NaN 181650 35 0 10385 0.261 -1 MWSSFLCIT 9 71 580.7575884569756 1159.500623980751 2 581.3273315429688 MULTI HCD FTMS 0 0 0 22902 46862.29296875 0.33810903748977506 6 -0.16040802001953125 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))WSSFLC(Carbamidomethyl (C))IT_ ENST00000314891.10_1_15:34654487-34657250:-|nuORF 14.838274106304384 0.23215694253501695 1 [YV]VGS{M(Oxidation (M))|F}SW 8 -1 67.498 0 0 5.8213 0 0 0 231.04314042045726 231.04314042045726 55.52550919747414 0 0 0 0 1.3494850021680094 1.6989700043360187 0.6747425010840047 0 [YV]VGS{M(Oxidation (M))|F}SW 5.8213 - 444 NaN NaN 111633.6 NaN 18727 4175 22902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22905 91.318 NaN 328440 35 0 37352 0.261 + 8097 GKQILLPSDF 10 65 559.3145232649715 NaN 0 559.3140258789062 PEAK HCD FTMS 0 0 0 22902 8175.28271484375 0.23380187886290957 1 -0.01950836181640625 3 Unmodified _GKQILLPSDF_ ENST00000409891.5_1_2:175431793-175431907:-|nuORF 6.2057823575117 0.3348729994311477 1 {M(Oxidation (M))|F}EG{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 7 8 24.545 0 0 2.1982 0 0 132.17718998521792 162.02288232974846 294.2000723149664 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}EG{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 2.1982 - 372 + NaN NaN 136600.9 NaN 18728 4175 22902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22906 91.322 NaN 105730 35 0 29581 0.261 + 34859 YSCNPWAK 8 37 484.71829197731563 NaN 0 484.7182312011719 PEAK HCD FTMS 0 0 0 22902 64341.52734375 0.36888024406060343 -3 0.08690643310546875 4 Unmodified _YSCNPWAK_ REV__ENST00000356495.4_1_1:207103472-207103649:-|nuORF 0.7936320650641473 0.38822285293237185 1 SC(Carbamidomethyl (C)) 2 -1 11.471 0 0 1.1857 0 0 424.28050377709377 293.04303974542546 717.3235435225192 0 0 0 0 0 0.28872548999643577 0 0 0 SC(Carbamidomethyl (C)) 1.1857 + + 3 + NaN NaN 116708.9 NaN 18729 4175 22902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22907 91.325 NaN 63086 35 0 3640.8 0.261 + -1 YILKRELCD 9 46 605.3185649124005 1208.6225768916008 2 603.3403930664062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _YILKRELC(Carbamidomethyl (C))D_ REV__ENSG00000204361|ENST00000389586|NXPE2 5.230669730166228 0.3113646817964458 1 [Y{I|L}]{I|L} 3 -1 24.181 0 0 2.0007 0 0 0 816.3680352258383 816.3680352258383 18.696662315049934 0 0 0 0 0 2 0 0 [Y{I|L}]{I|L} 2.0007 + + 7 NaN NaN 98844.1 NaN 18730 4175 22902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22909 91.33 NaN 1925700 35 0 96765 0.326 -1 0 107 633.3692585006554 1264.7239640681107 2 633.369384765625 MULTI HCD FTMS 0 0 0 22908 3007015.25 0.9436995974939206 3 -0.09522247314453125 1 NaN NaN 1 QN[{I|L}V]{[DS]|[MA]|[CV]|TT} 6 -1 11.712 0 0 0.92606 0 0 590.35356337715 0 590.35356337715 0 0.5411342943241255 0 0 0 1.079689690656103 0 0 0 QN[{I|L}V]{[DS]|[MA]|[CV]|TT} 0.92606 - 249 NaN NaN 329110 NaN 18731 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22910 91.334 NaN 2738300 35 0 697150 0.262 + 30512 VMPSSFFLL 9 89 528.7748397343565 1055.535126535513 2 528.775146484375 MULTI HCD FTMS 0 0 0 22908 1229026.5 0.6499648086548696 3 -0.09522247314453125 2 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 89.42679046578446 0.004540987215715461 1 S{I|L}{M(Oxidation (M))|F}YE{I|L} 6 6 53.004 0 0 5.0216 0 0 285.16877944160314 0 285.16877944160314 0 23.26733193413073 0 0 0 0.3807196863200844 0 1.829689690656103 0 S{I|L}{M(Oxidation (M))|F}YE{I|L} 5.0216 - 1170 NaN NaN 495687.8 NaN 18732 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22911 91.338 NaN 989770 35 0 199660 0.261 + 15549 LPDQAFFVL 9 55 525.2869224129051 1048.5592918926102 2 525.287109375 MULTI HCD FTMS 0 0 0 22908 758997.1875 0.9279771947842353 -2 0.0422821044921875 3 Unmodified _LPDQAFFVL_ ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-2|IL33;nc|ENSG00000137033|O95760-3|IL33;nc|ENSG00000137033|O95760-4|IL33 21.536976647645854 0.1742816388551942 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 5 41.186 0 0 3.9278 0 0 524.2807484357437 0 524.2807484357437 0 24.987737688117235 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.9278 + + 76 NaN NaN 235471.3 NaN 18733 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22912 91.341 NaN 543580 35 0 158650 0.261 + -1 VWTDTCALL 9 81 539.7657522386556 1077.5169515441112 2 539.766357421875 MULTI HCD FTMS 0 0 0 22908 203969.625 0.5888245247294414 7 -0.18658447265625 4 Carbamidomethyl (C) _VWTDTC(Carbamidomethyl (C))ALL_ REV__ENSG00000196071|ENST00000358120|OR2L13 15.847184025352803 0.2234401846867398 1 VWS{I|L}{M(Oxidation (M))|F}Y[YT] 8 -1 + 35.628 0 0 3.3065 3.3065 87.446 0 0 0 12.796765842090778 3.098943791441968 3.098943791441968 22.489415251814787 0 0.3054621874040891 0 0 0 VWS{I|L}{M(Oxidation (M))|F}Y[YT];{I|L}[DG]S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];[DG]{I|L}S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];V{[DA]|[EG]}S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];[TA]{I|L}[WK]D[EC]{I|L};[DG]{I|L}C(Carbamidomethyl (C))[SG]{I|L}[{I|L}P]{M(Oxidation (M))|F} 3.3065;1.2193;1.1454;1.0507;0.96532;0.42322 -;-;-;-;-;- 278 + NaN NaN 163952.3 NaN 18734 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22913 91.345 NaN 408080 35 0 34489 0.261 + 29540 TYWGLFEL 8 51 514.7581357244944 1027.5017185157888 2 515.27734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TYWGLFEL_ REV__ENSG00000168090|ENST00000303904|COPS6;REV__ENST00000474823.5_1_7:99688002-99688155:+|nuORF;REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF 8.593279151180031 0.5292430274356741 1 EV{I|L}EYV{M(Oxidation (M))|F} 7 -1 31.982 0 0 3.1126 0 0 130.05666845279399 0 130.05666845279399 0 2.2405330906888388 0 0 0 0 0 0 0 EV{I|L}EYV{M(Oxidation (M))|F} 3.1126 - 185 + NaN NaN 138853.4 NaN 18735 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22914 91.348 NaN 354760 35 0 25667 0.261 + 26736 SYDVFQLEF 9 76 574.2689788586981 1146.5234047841961 2 574.2691650390625 MULTI HCD FTMS 0 0 0 22908 98538.546875 0.04739191100876004 13 -0.33327484130859375 6 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 79.59630418116434 0.005983006570063981 1 [{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 9 4 + 70.697 0 0 6.1662 6.1662 89.829 0 0 0 1.4511996594528398 38.45795416671878 1.4511996594528398 12.26280941356464 0 2.305462187404089 0 0.872363747448347 0.3054621874040891 [{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[YQ]{M(Oxidation (M))|F}V{I|L}E{M(Oxidation (M))|F};[YV]V[SG]{M(Oxidation (M))|F}{[CP]|[EA]}E{M(Oxidation (M))|F};[YV]V[YQ]{[CP]|[EA]}E{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[DS]|[MA]|[CV]|TT}S{M(Oxidation (M))|F}V{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KT]{M(Oxidation (M))|F}{[CP]|[EA]}E{M(Oxidation (M))|F};[YV]V[SG]E{[MS]|[{M(Oxidation (M))|F}A]}E{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[HG]|PP}V{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KT]E{[MS]|[{M(Oxidation (M))|F}A]}E{M(Oxidation (M))|F} 6.1662;5.0966;4.1592;3.7059;3.4605;3.2831;2.971;2.9082;2.6735;2.1733 -;-;-;-;-;-;-;-;-;- 2162 NaN NaN 130380.2 NaN 18736 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22915 91.351 NaN 143350 35 0 6698.5 0.263 + 7096 FRKLLCRFLN 10 57 437.2571673314201 1308.7496725944602 3 437.25732421875 MULTI HCD FTMS 0 0 0 22908 126722.421875 0.6203849212432306 6 -0.1703643798828125 7 Unmodified _FRKLLCRFLN_ ENST00000333957.8_1_12:22602190-22602310:-|nuORF 0.6976657623105312 0.47161084886498755 1 Q 1 10 4.732 0 0 0.36156 0 0 960.5584932505134 217.10886560611564 1177.667358856629 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.36156 - 4 + NaN NaN 110778.9 NaN 18737 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22916 91.355 NaN 353470 35 0 36989 0.261 + 27974 TFDVSLLTI 9 50 504.7842733931966 1007.5539938531932 2 504.7843933105469 MULTI HCD FTMS 0 0 0 22908 97223.96875 0.2361917965753041 -2 0.0422821044921875 8 Unmodified _TFDVSLLTI_ ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF 92.4914307365334 0.004460681868130716 1 [{M(Oxidation (M))|F}T]DVS{I|L}{I|L}T{I|L} 9 0 + 64.452 0 0 6.3969 6.3969 89.603 0 0 0 2.6760624017703094 55.49980340329462 2.6760624017703094 9.948500216800937 0 1.610924374808178 0 1.2302046884880937 0 + + [{M(Oxidation (M))|F}T]DVS{I|L}{I|L}T{I|L};[{I|L}T][YG]D{I|L}{I|L}T{I|L};[{M(Oxidation (M))|F}T][VS]D{I|L}{I|L}T{I|L} 6.3969;5.4095;4.6372 +;-;- + 139 NaN NaN 140148.8 NaN 18738 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22917 91.358 NaN 234990 35 0 21425 0.261 + 13469 KYPENFFLL 9 68 585.8135101996211 1169.612467466042 2 585.8137817382812 MULTI HCD FTMS 0 0 0 22908 93027.3828125 0.1527755054092578 -28 0.7676849365234375 9 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 28.494509381512117 0.11816142465008336 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 26.287 0 0 2.2475 0 0 778.3673573224625 0 778.3673573224625 0 13.098943791441968 0 0 0 0.7614393726401688 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.2475 + + 165 NaN NaN 131673.4 NaN 18739 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22918 91.361 NaN 83502 35 0 19288 0.262 + 10619 IPQLLEAVL 9 32 498.31044643002224 994.6063399268445 2 498.31036376953125 MULTI HCD FTMS 0 0 0 22908 54013.5 0.0880333856512109 7 -0.18658447265625 10 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 8.155526934196011 0.2891920862272901 1 EAV{I|L} 4 5 36.186 0 0 3.6382 0 0 564.3607655255875 0 564.3607655255875 0 36.18562527100117 0 0 0 0.4247425010840047 0 0 0 + EAV{I|L} 3.6382 + + 6 NaN NaN 100264.9 NaN 18740 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22919 91.364 NaN 495620 35 0 87292 0.261 + 11266 IYLPYLQNW 9 74 605.3185649124005 1208.6225768916008 2 605.3180541992188 MULTI HCD FTMS 0 0 0 22908 90531.9140625 0.13365837640174175 -3 0.07686614990234375 11 Unmodified _IYLPYLQNW_ ENSG00000151116|ENST00000396197|UEVLD;ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD 104.79918948944588 0.003791450360204016 1 [Y{I|L}]{I|L}PY{I|L}QNW 9 0 + 99.346 0 0 8.2198 8.2198 91.82 0 0 0 5.9640156839957825 5.9640156839957825 5.9640156839957825 9.208187539523749 0 2.774227503252014 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}PY{I|L}QNW;[Y{I|L}]{I|L}PY{I|L}QGGW;[Y{I|L}]{I|L}PY{I|L}[AG]NW;[Y{I|L}]{I|L}PY{I|L}[AG]GGW;[Y{I|L}]{I|L}PY{I|L}NQW;[Y{I|L}]{I|L}PY{I|L}GGQW 8.2198;7.4579;7.4579;6.6997;6.691;5.9291 +;-;-;-;-;- + 618 NaN NaN 164165.2 NaN 18741 4176 22908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22921 91.369 NaN 412400 35 0 105480 0.327 + -1 MLDIMLPEL 9 61 553.780007840248 NaN 0 553.792236328125 PEAK HCD FTMS 0 0 0 22920 20043.013671875 0.5953499340951073 -3 0.081756591796875 1 2 Oxidation (M) _M(Oxidation (M))LDIM(Oxidation (M))LPEL_ REV__ENST00000321394.11_1_6:160200003-160200165:-|nuORF 7.289230182591677 0.2599242500475609 1 {I|L}PEY 4 -1 17.167 0 0 1.5528 0 0 131.07028500581526 469.20859705142817 600.2788820572434 0 0 0 0 0 0 0 0 0 {I|L}PEY 1.5528 - 84 + NaN NaN 151336.8 NaN 18742 4177 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22922 91.374 NaN 283600 35 0 22540 0.261 + -1 ITCFPLTEL 9 62 547.2843054778297 1092.5540580224592 2 547.784423828125 MULTI HCD FTMS 0 0 0 22920 95662.3515625 0.5561374601999206 2 -0.05574798583984375 2 Carbamidomethyl (C) _ITC(Carbamidomethyl (C))FPLTEL_ REV__ENST00000557029.5_1_14:59824035-59826179:+|nuORF 26.88365393820708 0.12808753336095696 1 [VP]YG{I|L}{[DS]|[MA]|[CV]|TT}TE{I|L} 10 -1 + 46.954 0 0 4.2977 4.2977 87.874 0 0 0 2.6709779556855295 31.469771685254386 2.6709779556855295 17.621819788841453 0 1.1435078169319297 0 0.7614393726401688 0 [VP]YG{I|L}{[DS]|[MA]|[CV]|TT}TE{I|L};{[ET]|[MV]}W{I|L}[R{M(Oxidation (M))|F}]E{I|L};{[QN]|[E{I|L}]|[KN]}{[WT]|[RM]}[R{M(Oxidation (M))|F}]E{I|L};[VP][W{M(Oxidation (M))|F}][R{M(Oxidation (M))|F}]E{I|L};{[ET]|[MV]}W{I|L}[PS][{M(Oxidation (M))|F}T]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WR]N[{M(Oxidation (M))|F}T]{I|L} 4.2977;2.6848;1.6196;1.4584;1.1026;0.52093 -;-;-;-;-;- 141 NaN NaN 121759.3 NaN 18743 4177 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22923 91.377 NaN 223590 35 0 20590 0.261 -1 NYLPFIMEL 9 67 578.2910021930841 1154.567451452968 2 578.2911376953125 MULTI HCD FTMS 0 0 0 22920 45297.96484375 0.47860897192759294 2 -0.05574798583984375 3 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 32.78568957990786 0.09846250359632436 1 {I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 6 -1 32.991 0 0 2.8574 0 0 374.1804371564469 0 374.1804371564469 0 5.314841474608762 0 0 0 0.6861818737241735 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 2.8574 - 191 NaN NaN 116748.9 NaN 18744 4177 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22924 91.381 NaN 170020 35 0 14210 0.261 + 29291 TYLSIFDQL 9 63 550.2876101273538 1098.5606673215075 2 550.287353515625 MULTI HCD FTMS 0 0 0 22920 87973.9921875 0.24554698939823552 3 -0.07851409912109375 4 Unmodified _TYLSIFDQL_ ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF 43.981846655682396 0.04706587046877104 1 [YT]{I|L}S{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 9 0 + 51.972 0 0 4.7309 4.7309 89.209 0 0 0 7.147642715192504 34.981968464902025 7.147642715192504 23.525684359364405 0 1.9489700043360187 0 0.7302046884880937 0.3807196863200844 + + [YT]{I|L}S{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[YT]{I|L}{[TV]|[{I|L}S]}GS[{M(Oxidation (M))|F}V]{I|L};[YT]{I|L}[SG]{I|L}S[{M(Oxidation (M))|F}V]{I|L};[YT]{I|L}{[TV]|[{I|L}S]}GS{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}[SG]{I|L}S{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}{[NV]|[RG]}{M(Oxidation (M))|F}ET{I|L};[YT]K[TP]{M(Oxidation (M))|F}ET{I|L} 4.7309;2.5894;2.2428;1.7232;1.3767;0.9672;0.5069 +;-;-;-;-;-;- + 351 NaN NaN 118174 NaN 18745 4177 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22925 91.384 NaN 437650 35 0 50668 0.261 + 11757 KDNIEEALL 9 86 522.7805030893684 NaN 0 522.7911987304688 PEAK HCD FTMS 0 0 0 22920 5635.4248046875 0.07215253627635235 -1 0.0394744873046875 5 Unmodified _KDNIEEALL_ ENSG00000068724|ENST00000319190|TTC7A;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;nc|ENSG00000068724|Q9ULT0-4|TTC7A 29.081581746732265 0.1264406993618811 1 A 1 8 13.227 0 0 1.2675 0 0 244.17811782050939 725.3083605543835 969.4864783748928 0 0 0 0 0 0.9247425010840047 0 0 0 + A 1.2675 + + 177 NaN NaN 147797.6 NaN 18746 4177 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22927 91.389 NaN 1115200 35 0 51172 0.326 -1 0 123 641.8824831880886 1281.750413442977 2 641.882568359375 MULTI HCD FTMS 0 0 0 22926 1949824.375 1 0 0 1 NaN NaN 1 [RH]{I|L}{I|L}C{I|L}A[RV]D 10 -1 10.499 0 0 0.81908 0 0 0 102.05614398696494 102.05614398696494 -0.4774148280735222 0 -0.4774148280735222 0 0 1.4361818737241734 0 0.3807196863200844 1.274227503252014 [RH]{I|L}{I|L}C{I|L}A[RV]D 0.81908 - 711 NaN NaN 250211.9 NaN 18747 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22928 91.393 NaN 609540 35 0 41859 0.264 -1 0 109 422.58167378528765 1264.723191956063 3 422.5819396972656 MULTI HCD FTMS 0 0 0 22926 382705.4375 0.887398238576044 1 -0.036224365234375 2 NaN NaN 1 N[{I|L}V]N 4 -1 14.693 0 0 1.1617 0 0 806.4507835945465 0 806.4507835945465 0 4.208187539523749 0 0 0 1 0 0 0 N[{I|L}V]N 1.1617 - 74 NaN NaN 184238.1 NaN 18748 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22929 91.397 NaN 397670 35 0 29303 0.261 + 26974 SYLNSFFQL 9 74 559.7790739081463 1117.5435948830925 2 559.7800903320312 MULTI HCD FTMS 0 0 0 22926 301681.1875 0.9244880303396238 -1 0.01952362060546875 3 Unmodified _SYLNSFFQL_ ENSG00000165424|ENST00000372336|ZCCHC24 168.5375213894962 4.622051367253751E-09 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 94.932 0 0 8.4947 8.4947 92.25 0 0 0 5.6424927368725974 77.75544193613001 5.6424927368725974 9.208187539523749 0 2.5752574989159953 0 1.0484550065040281 1.1861818737241734 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[YK]V{[MS]|[{M(Oxidation (M))|F}A]}Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YK]VN[MT]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[YK]VN[TP]{M(Oxidation (M))|F} 8.4947;7.6707;6.9894;5.7892;5.0158;4.9148;4.5288;4.4497;3.8511;3.33 +;-;-;-;-;-;-;-;-;- + 1403 NaN NaN 145797.4 NaN 18749 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22930 91.4 NaN 285180 35 0 84125 0.264 -1 0 42 405.11870980179765 808.2228666703953 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22926 588413.0625 0.566259878908581 29 -0.7587738037109375 4 NaN NaN 1 S 1 -1 8.9794 0 0 1.111 0 0 517.1501764983211 201.02181421451408 718.1719907128352 0 0 0 0 0 0.5 0 0 0 S 1.111 - 3 + NaN NaN 119325.2 NaN 18750 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22931 91.404 NaN 92080 35 0 5072.9 0.261 -1 0 58 619.8697049488608 1237.7248569645215 2 619.8693237304688 MULTI HCD FTMS 0 0 0 22926 165650.84375 0.0746598128195857 46 -1.2044448852539062 5 NaN NaN 1 [Y{I|L}]{I|L} 3 -1 8.072 0 0 0.65216 0 0 0 845.4723599764933 845.4723599764933 2.798859261803983 0 0 0 0 0 0 0 0 [Y{I|L}]{I|L} 0.65216 - 18 NaN NaN 91653.2 NaN 18751 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22932 91.407 NaN 275070 35 0 27392 0.261 + 1256 AYLSIWTEL 9 63 548.2895824844521 NaN 0 548.2899169921875 PEAK HCD FTMS 0 0 0 22926 179162.859375 1 0 0 6 Unmodified _AYLSIWTEL_ ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1 54.773552608820026 0.03521077087578403 1 SM{I|L} 3 7 20.93 0 0 1.9122 0 0 347.18687873667915 413.18331907316514 760.3701978098443 0 0 0 0 0 0.7742275032520141 0 0 0 SM{I|L} 1.9122 - 100 + NaN NaN 140144.6 NaN 18752 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22933 91.41 NaN 785610 35 0 116470 0.261 -1 NWSGMKCQF 9 95 579.2453944303466 1156.476235927493 2 579.767578125 MULTI HCD FTMS 0 0 0 22926 9754.140625 0.061028609192149225 7 -0.1833343505859375 7 Carbamidomethyl (C) _NWSGMKC(Carbamidomethyl (C))QF_ ENSG00000141314|ENST00000269051|RHBDL3;nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3 8.593279151180031 0.2858735984551981 1 SN{M(Oxidation (M))|F}VY[VP]S{M(Oxidation (M))|F} 9 -1 35.389 0 0 3.0601 0 0 97.9944814357212 0 97.9944814357212 0 5.863650028014437 0 0 0 0 0 0.7614393726401688 0.3494850021680094 SN{M(Oxidation (M))|F}VY[VP]S{M(Oxidation (M))|F} 3.0601 - 938 + NaN NaN 201166.1 NaN 18753 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22934 91.414 NaN 140050 35 0 15519 0.263 + 26278 SRDRLLARRPN 11 48 451.9324500525328 1352.7755207577984 3 451.93267822265625 MULTI HCD FTMS 0 0 0 22926 25943.732421875 0.18114022580141567 -10 0.2763214111328125 8 Unmodified _SRDRLLARRPN_ REV__ENST00000523834.1_1_8:38645888-38646230:+|nuORF 0.5059551277355931 0.4167017191902429 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 100787.1 NaN 18754 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22935 91.417 NaN 184640 35 0 26015 0.261 + 34291 YPDSDAVLICF 11 59 621.7895841469875 NaN 0 621.7896728515625 PEAK HCD FTMS 0 0 0 22926 67738.421875 0.9357929005731416 -3 0.0785064697265625 9 Unmodified _YPDSDAVLICF_ ENSG00000108830|ENST00000587250|RND2;ENSG00000115963|ENST00000263895|RND3 17.11289562659939 0.27893181706115244 1 C{I|L}{I|L} 3 9 24.922 0 0 2.0073 0 0 165.08265472615886 744.284145723616 909.3668004497749 0 0 0 0 0 1.3494850021680094 0 0 0 C{I|L}{I|L} 2.0073 - 103 + NaN NaN 113645.8 NaN 18755 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22936 91.42 NaN 210270 35 0 18225 0.264 + 26550 SVMLELVAL 9 55 487.7833217917356 973.5520906502712 2 487.7834167480469 MULTI HCD FTMS 0 0 0 22926 107291.2734375 0.7757801053023673 -1 0.01952362060546875 10 Unmodified _SVMLELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 71.13359017698441 0.008721403657255008 1 GE{I|L}VA{I|L} 6 4 68.237 0 0 7.0091 0 0 373.1996327130875 0 373.1996327130875 0 61.247293946369794 0 0 0 1.9247425010840047 0 1.1989700043360187 0 GE{I|L}VA{I|L} 7.0091 - 110 NaN NaN 120127.2 NaN 18756 4178 22926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22938 91.425 NaN 396520 35 0 47023 0.327 + 18953 NAIEDTIFYL 10 49 599.803324690749 1197.592096448298 2 599.8034057617188 MULTI HCD FTMS 0 0 0 22937 288634.46875 0.7757099390160481 2 -0.04567718505859375 1 Unmodified _NAIEDTIFYL_ ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 78.06048673739656 0.008034375046376557 1 EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 7 3 74.87 0 0 6.2517 0 0 298.16365248847814 0 298.16365248847814 0 67.42229802933785 0 0 0 2.6549471895720984 0 1.1989700043360187 0 + EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 6.2517 + + 164 NaN NaN 140789.2 NaN 18757 4179 22937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22939 91.429 NaN 1249300 35 0 182590 0.261 + 20229 NYLPAINGIVF 11 83 610.8375392815641 1219.660525629928 2 610.8377075195312 MULTI HCD FTMS 0 0 0 22937 471275.46875 1 0 0 2 Unmodified _NYLPAINGIVF_ ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B;nc|ENSG00000079332|Q9NR31-2|SAR1A 82.5293158979368 0.0031855940243426003 1 [Y{I|L}][KS]G{I|L}AP[QP]{M(Oxidation (M))|F} 11 8 + 43.318 0 0 3.5517 3.5517 86.067 0 0 0 3.083060687231054 33.82046287540457 3.083060687231054 12.781512503836424 0 0.8807196863200843 1.3010299956639813 0 0.3252574989159953 [Y{I|L}][KS]G{I|L}AP[QP]{M(Oxidation (M))|F};[Y{I|L}]{I|L}[KG]SAP[QP]{M(Oxidation (M))|F} 3.5517;2.5037 -;- 343 NaN NaN 275132.6 NaN 18758 4179 22937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22940 91.433 NaN 269650 35 0 19642 0.261 -1 FYLMQIVEI 9 65 586.3057924527185 1170.597031972237 2 586.3058471679688 MULTI HCD FTMS 0 0 0 22937 160183.84375 0.8706816322239052 1 -0.02276611328125 3 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 31.26834338654808 0.10542797264966089 1 TVE{I|L} 4 -1 36.67 0 0 3.1326 0 0 710.3595448224625 0 710.3595448224625 0 25.70107520596089 0 0 0 0.9247425010840047 0 0 0 TVE{I|L} 3.1326 - 494 NaN NaN 131127.3 NaN 18759 4179 22937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22941 91.436 NaN 108140 35 0 19130 0.264 + 14979 LLIMTNVLLRN 11 44 433.93253884535375 1298.7757871362612 3 433.9327392578125 MULTI HCD FTMS 0 0 0 22937 30231.5859375 0.2619312926709872 1 -0.02276611328125 4 Unmodified _LLIMTNVLLRN_ REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|42 0.5059551277355931 0.4167017191902429 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114373.9 NaN 18760 4179 22937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22942 91.44 NaN 258270 35 0 18189 0.261 -1 YIPCRTWW 8 62 591.2802274866467 1180.5459020400933 2 591.2611694335938 MULTI HCD FTMS 0 0 0 22937 30505.20703125 0.8046197774711742 2 -0.04567718505859375 5 Carbamidomethyl (C) _YIPC(Carbamidomethyl (C))RTWW_ ENSG00000163701|ENST00000383814|IL17RE;ENST00000383815.7_1_3:9944714-9956386:+|nuORF;ENST00000489181.5_1_3:9944520-9950978:+|nuORF;nc|ENSG00000163701|Q8NFR9-3|IL17RE;nc|ENSG00000163701|Q8NFR9-5|IL17RE 12.531546534597751 0.5015908124873912 1 [Y{I|L}]EN{M(Oxidation (M))|F}ADY 8 -1 51.336 0 0 4.3485 0 0 0 162.09606293584412 162.09606293584412 20.70107520596089 0 0 0 0 0.5 0 1 0.7742275032520141 [Y{I|L}]EN{M(Oxidation (M))|F}ADY 4.3485 - 806 NaN NaN 128529.8 NaN 18761 4179 22937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22943 91.443 NaN 89215 35 0 12201 0.261 + -1 CAVIRNKWKC 10 36 639.335071274705 NaN 0 639.3347778320312 PEAK HCD FTMS 0 0 0 22937 29637.896484375 0.30554461092189783 4 -0.09136199951171875 6 Carbamidomethyl (C) _CAVIRNKWKC(Carbamidomethyl (C))_ REV__HEATR4|p.Q642K|1|0.16|ENSG00000187105|chr14:73506529-73506529|G/T|missense_variant 1.4819007175156935 0.33891598740166873 1 Y 1 -1 9.732 0 0 0.7623 0 0 319.1753172546849 791.3946016900999 1110.5699189447848 0 0 0 0 0 0.4247425010840047 0 0 0 Y 0.7623 - 4 + NaN NaN 99744.3 NaN 18762 4179 22937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22945 91.448 NaN 824980 35 0 79691 0.327 + 1261 AYLTELAIF 9 78 520.7868995882154 1039.5592462432307 2 521.3026123046875 MULTI HCD FTMS 0 0 0 22944 19837.42578125 0.5499073901120468 2 -0.05237579345703125 1 Unmodified _AYLTELAIF_ ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL 28.486842064014134 0.11819662193267319 1 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}Q 8 7 29.682 0 0 2.8552 0 0 0 113.02452353948937 113.02452353948937 -0.9406074087512373 0 -0.9406074087512373 0 0 0 1.2218487496163564 0.3252574989159953 0.28872548999643577 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}Q 2.8552 - 488 NaN NaN 212961.8 NaN 18763 4180 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22946 91.452 NaN 450050 35 0 130550 0.261 + 21367 PTLVTYIIT 9 47 510.8022312379822 1019.5899095427644 2 511.28948974609375 MULTI HCD FTMS 0 0 0 22944 17941.92578125 0.15519318880770888 2 -0.05237579345703125 2 Unmodified _PTLVTYIIT_ REV__ENSG00000173679|ENST00000309623|OR1L1;REV__nc|ENSG00000173679|Q8NH94|OR1L1 15.847184025352803 0.2234401846867398 1 AV{M(Oxidation (M))|F} 3 -1 21.682 0 0 2.1266 0 0 684.4061154527238 0 684.4061154527238 0 -0.01226231188276472 -0.01226231188276472 0 0 0 0 0 0 AV{M(Oxidation (M))|F} 2.1266 - 52 + NaN NaN 147590.4 NaN 18764 4180 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22947 91.456 NaN 152120 35 0 9325.5 0.261 + 5400 FGVAFLFLFLN 11 56 644.3602182684886 1286.705883603777 2 644.3607788085938 MULTI HCD FTMS 0 0 0 22944 81185.2265625 0.29785580807000883 2 -0.05237579345703125 3 Unmodified _FGVAFLFLFLN_ REV__ENSG00000152254|ENST00000375363|G6PC2 3.2813086475875832 0.40452996145431686 1 W 1 -1 13.979 0 0 1.0864 0 0 1082.6160836543613 0 1082.6160836543613 0 11.505149978319906 0 0 0 0 0 0 0 W 1.0864 - 26 + NaN NaN 115597 NaN 18765 4180 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22948 91.459 NaN 127160 35 0 16659 0.264 + 15298 LPALEVLDL 9 41 491.79450611035634 981.5744592875127 2 491.7945861816406 MULTI HCD FTMS 0 0 0 22944 32692.69921875 0.11024255775591121 2 -0.05237579345703125 4 Unmodified _LPALEVLDL_ ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1 24.020572477871973 0.15282392193088168 1 V{I|L}D{I|L} 4 5 46.186 0 0 4.7053 0 0 523.3009886906596 0 523.3009886906596 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 + V{I|L}D{I|L} 4.7053 + + 29 NaN NaN 119706.8 NaN 18766 4180 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22949 91.463 NaN 161130 35 0 14870 0.261 + 7653 FYISQLAYW 9 54 595.7975642779678 1189.5805756227355 2 595.7971801757812 MULTI HCD FTMS 0 0 0 22944 39028.2421875 0.5460883950880177 -1 0.02276611328125 5 Unmodified _FYISQLAYW_ ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1;nc|ENSG00000067167|Q15629-2|TRAM1 17.11289562659939 0.2125047172822487 1 {I|L}AYW 4 5 36.983 0 0 3.1089 0 0 638.3071156232437 0 638.3071156232437 0 29.323806533759438 0 0 0 1.1549471895720984 0 0 0 + {I|L}AYW 3.1089 + + 54 NaN NaN 112767.2 NaN 18767 4180 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22950 91.466 NaN 97443 35 0 8825.1 0.262 + 18748 NAAARRSVF 9 43 496.276570541741 990.5385881502821 2 496.2763671875 MULTI HCD FTMS 0 0 0 22944 7698.38525390625 0.05925307382668016 9 -0.2152862548828125 6 Unmodified _NAAARRSVF_ ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210 10.823927491677226 0.26684000660059787 1 W{M(Oxidation (M))|F} 2 8 30.969 0 0 3.1265 0 0 639.3597165110634 0 639.3597165110634 0 30.969100130080562 0 0 0 1 0 0 0 W{M(Oxidation (M))|F} 3.1265 - 9 NaN NaN 98731.2 NaN 18768 4180 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22952 91.471 NaN 1238200 35 0 57781 0.327 -1 0 108 633.3692585006554 1264.7239640681107 2 633.3694458007812 MULTI HCD FTMS 0 0 0 22951 1898434 0.5957905939016351 8 -0.19237518310546875 1 NaN NaN 1 {[HG]|PP}N[WR]RK 7 -1 11.436 0 0 0.90424 0 0 0 327.1445943287882 327.1445943287882 0.9515933703112545 0 0 0 0 1.1382104921644451 0 0 0 {[HG]|PP}N[WR]RK 0.90424 - 167 + NaN NaN 268308 NaN 18769 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22953 91.475 NaN 1253000 35 0 306630 0.262 + 30513 VMPSSFFLL 9 91 528.7748397343565 1055.535126535513 2 528.7755737304688 MULTI HCD FTMS 0 0 0 22951 595474.1875 0.3149136868386088 8 -0.19237518310546875 2 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 67.34385681178166 0.00994769994983633 1 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 8 6 + 46.007 0 0 4.3586 4.3586 82.138 0 0 0 3.759567172006413 16.40978057358332 3.759567172006413 3.759567172006413 0 0.9247425010840047 1.0457574905606752 0.909097005026964 0 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][YT][PG]{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}C]|[YS]}[PG]{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}][KP]E{I|L};[YT][W{I|L}][{M(Oxidation (M))|F}T]{I|L}{I|L};[YG][VP]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L}S[PG]{I|L} 4.3586;4.0024;3.2727;3.2495;3.141;2.6964;1.9428;1.8518;1.6941;1.4381 -;+;-;-;-;-;-;-;-;- + 1088 NaN NaN 276178.3 NaN 18770 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22954 91.479 NaN 433190 35 0 75505 0.261 + 21778 QAIDFPFLV 9 48 525.2869224129051 1048.5592918926102 2 525.287109375 MULTI HCD FTMS 0 0 0 22951 265086.25 0.3241039607289355 3 -0.078521728515625 3 Unmodified _QAIDFPFLV_ ENSG00000165059|ENST00000377276|PRKACG 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}V{I|L} 3 7 35.445 0 0 3.3804 0 0 671.3276180799819 0 671.3276180799819 0 26.49288766643714 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}V{I|L} 3.3804 - 68 NaN NaN 149323.2 NaN 18771 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22955 91.482 NaN 217780 35 0 49399 0.261 + 31486 VYFFTFIF 8 38 542.2824827859514 NaN 0 542.271728515625 PEAK HCD FTMS 0 0 0 22951 15618.189453125 1 0 0 4 Unmodified _VYFFTFIF_ ENSG00000164615|ENST00000297156|CAMLG 11.114462752807354 0.38822285293237185 1 {I|L}E{I|L}{I|L} 4 7 25.433 0 0 2.3494 0 0 449.1757310974902 162.05605493717033 611.2317860346606 0 0 0 0 0 0.5 0 0 0 {I|L}E{I|L}{I|L} 2.3494 - 33 + NaN NaN 133801.2 NaN 18772 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22956 91.485 NaN 218120 35 0 44664 0.261 -1 YFEELITML 9 43 587.7887125399347 1173.5628721466694 2 588.2906494140625 MULTI HCD FTMS 0 0 0 22951 41399.296875 0.18500805967616754 19 -0.5069122314453125 5 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 20.453626601364224 0.18364154288633264 1 {I|L}T{M(Oxidation (M))|F}{I|L} 4 -1 27.237 0 0 2.3209 0 0 681.3010853220691 0 681.3010853220691 0 7.773109370204452 0 0 0 1.2302046884880937 0 0.3252574989159953 0 {I|L}T{M(Oxidation (M))|F}{I|L} 2.3209 + + 40 + NaN NaN 111033.7 NaN 18773 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22957 91.489 NaN 228730 35 0 19089 0.261 -1 SPMDIFDMF 9 77 567.7279453263786 1133.4413377195572 2 567.7279663085938 MULTI HCD FTMS 0 0 0 22951 36817.859375 0.16301217875156382 50 -1.3093795776367188 6 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 28.875 0 0 2.5476 0 0 559.2303240275421 0 559.2303240275421 0 13.390625187447966 0 0 0 0.9247425010840047 0 0.3252574989159953 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5476 + + 130 + NaN NaN 113474.2 NaN 18774 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22958 91.492 NaN 264660 35 0 61991 0.261 + 2098 DFDVAVVTF 9 51 506.7529338445066 1011.4913147558132 2 507.25537109375 MULTI HCD FTMS 0 0 0 22951 40572.49609375 0.05082792600807503 -7 0.1831817626953125 7 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 36.12702656103203 0.08312389501731911 1 EVVT{M(Oxidation (M))|F} 5 5 42.874 0 0 4.2387 0 0 418.19392592597814 0 418.19392592597814 0 30.17085292514289 0 0 0 1.5451140161145327 0 0 0 EVVT{M(Oxidation (M))|F} 4.2387 - 255 NaN NaN 121471 NaN 18775 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22959 91.495 NaN 65505 35 0 8887.2 0.261 + 20621 PEVYFACIF 9 47 544.7608360629164 1087.5071191926327 2 544.7610473632812 MULTI HCD FTMS 0 0 0 22951 27650.65625 0.4405429832262311 12 -0.3069000244140625 8 Unmodified _PEVYFACIF_ REV__ENST00000220592.9_2_8:141532139-141532301:-|nuORF 12.531546534597751 0.2520865569484384 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7785 0 0 809.3453630386061 0 809.3453630386061 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.7785 + + 14 NaN NaN 112062.3 NaN 18776 4181 22951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22961 91.5 NaN 370690 35 0 63358 0.327 + 32131 VYSIINGIVF 10 57 562.8211799476131 1123.6278069620262 2 562.8213500976562 MULTI HCD FTMS 0 0 0 22960 182717.296875 0.8027107456805561 1 -0.0162200927734375 1 Unmodified _VYSIINGIVF_ ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3 110.6747026088012 5.03479218847684E-05 1 [YV]S{I|L}{I|L}NG{I|L}V{M(Oxidation (M))|F} 10 0 + 93.129 0 0 8.2882 8.2882 94.682 0 0 0 4.259687322722812 84.1495098905267 4.259687322722812 17.659389507179355 0 2.4247425010840047 0 1.4291746928241125 0.8494850021680094 + + [YV]S{I|L}{I|L}NG{I|L}V{M(Oxidation (M))|F};[YV]S{I|L}{I|L}GGG{I|L}V{M(Oxidation (M))|F};[YV]S{I|L}A[VG]G{I|L}V{M(Oxidation (M))|F};[YV]S{I|L}AK[TP]V{M(Oxidation (M))|F};[YV]S{I|L}AK{I|L}[PS]{M(Oxidation (M))|F};[YV]S{I|L}{I|L}[KA][PS]{M(Oxidation (M))|F} 8.2882;6.7166;5.7562;5.037;3.4302;3.3916 +;-;-;-;-;- + 515 NaN NaN 131968.6 NaN 18777 4182 22960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22962 91.505 NaN 438930 35 0 51149 0.261 + 27975 TFDVSLLTI 9 61 504.7842733931966 1007.5539938531932 2 504.7844543457031 MULTI HCD FTMS 0 0 0 22960 103620.2578125 0.2517306706257099 4 -0.0981292724609375 2 Unmodified _TFDVSLLTI_ ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF 115.6920309560759 0.002013163348980568 1 [{M(Oxidation (M))|F}T]DVS{I|L}{I|L}T{I|L} 9 0 + 63.841 0 0 6.3362 6.3362 85.117 0 0 0 2.6760624017703094 32.74858474643892 2.6760624017703094 3.1706931641401326 0 1.6747425010840047 0 1.2302046884880937 0 + + [{M(Oxidation (M))|F}T]DVS{I|L}{I|L}T{I|L};[{I|L}T][YG]D{I|L}{I|L}T{I|L};[{M(Oxidation (M))|F}T][VS]D{I|L}{I|L}T{I|L};[{I|L}T]{I|L}{I|L}SVD[{M(Oxidation (M))|F}T] 6.3362;6.0215;4.3353;2.111 +;-;-;- + 210 NaN NaN 141045.7 NaN 18778 4182 22960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22963 91.508 NaN 180950 35 0 22440 0.261 -1 VYMGLLAVF 9 47 514.776663445144 1027.5387739570879 2 514.7783813476562 MULTI HCD FTMS 0 0 0 22960 59153.203125 0.23127429352785323 18 -0.477447509765625 3 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 36.466142684027034 0.08156716203802528 1 C(Carbamidomethyl (C))P{I|L}AV{M(Oxidation (M))|F} 6 -1 54.87 0 0 5.3399 0 0 322.1986561505875 0 322.1986561505875 0 44.41245036856159 0 0 0 2 0 0 0 C(Carbamidomethyl (C))P{I|L}AV{M(Oxidation (M))|F} 5.3399 - 126 NaN NaN 110757.1 NaN 18779 4182 22960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22964 91.512 NaN 127570 35 0 5974.9 0.261 + -1 QMGVYNKQEPV 11 68 436.87975587750736 1307.6174382327222 3 437.2574462890625 MULTI HCD FTMS 0 0 0 22960 47041.69140625 0.8346680900004977 -13 0.36486053466796875 4 Oxidation (M) _QM(Oxidation (M))GVYNKQEPV_ REV__ENSG00000257594|ENST00000529983|GALNT4;REV__ENST00000547474.1_3_12:89916592-89919989:-|nuORF;REV__nc|ENSG00000257594|Q8N4A0-2|GALNT4 0.5059551277355931 0.4167017191902429 1 K 1 -1 1.7827 0 0 0.13633 0 0 893.3715289985385 283.1194246881469 1176.4909536866853 0 0 0 0 0 0 0 0 0 K 0.13633 + + 2 + NaN NaN 98933 NaN 18780 4182 22960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22966 91.517 NaN 540000 35 0 23285 0.327 -1 0 105 641.8824831880886 1281.750413442977 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22965 644740.125 0.3306657426518222 5 -0.12725067138671875 1 NaN NaN 1 A[RV]N 4 -1 12.747 0 0 0.99449 0 0 823.4745960919937 0 823.4745960919937 0 2.3459165064184617 0 0 0 0.5 0 0 0.3494850021680094 A[RV]N 0.99449 - 227 NaN NaN 179035.5 NaN 18781 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22967 91.521 NaN 948490 35 0 168130 0.261 -1 LMIMNKGLGSN 11 81 605.301022030474 NaN 0 605.3187866210938 PEAK HCD FTMS 0 0 0 22965 14088.7607421875 0.21952457863044234 -6 0.1471099853515625 2 2 Oxidation (M) _LM(Oxidation (M))IM(Oxidation (M))NKGLGSN_ ENSG00000125780|ENST00000381458|TGM3 19.256988751693697 0.2622778603542266 1 {M(Oxidation (M))|F}GQ{I|L}YP{I|L} 7 -1 39.06 0 0 3.2319 0 0 114.06030278591886 273.12432200281114 387.18462478873 0 0 0 0 0 0 0 0 0.7614393726401688 {M(Oxidation (M))|F}GQ{I|L}YP{I|L} 3.2319 - 1086 + NaN NaN 226445.1 NaN 18782 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22968 91.525 NaN 624520 35 0 72006 0.261 + 15454 LPDLLIFQM 9 86 553.302004280898 1104.589455628596 2 553.7922973632812 MULTI HCD FTMS 0 0 0 22965 67293.5234375 0.6421560909160581 -2 0.045684814453125 3 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 58.678817012210395 0.019429721296335044 1 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 36.206 0 0 3.2777 3.2777 82.564 0 0 0 1.1896094797945977 11.010971511813644 1.1896094797945977 7.526202187463088 0 1.5752574989159953 0 0.6861818737241735 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}VP{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};{I|L}{I|L}DP{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}VP{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{I|L}{I|L}DP{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[{I|L}P][WR]Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}YG{[DS]|[MA]|[CV]|TT};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}P{I|L}V[Q{I|L}];{[QN]|[E{I|L}]|[KN]}VP{I|L}{I|L}YG{[DS]|[MA]|[CV]|TT} 3.2777;2.5964;2.5358;2.4441;1.7628;1.7021;1.2046;0.76929;0.76392;0.087931 -;-;-;-;-;-;-;-;-;- 714 NaN NaN 179815.7 NaN 18783 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22969 91.528 NaN 920730 35 0 135530 0.261 -1 0 89 532.2935359920849 1062.5725190509697 2 532.2935791015625 MULTI HCD FTMS 0 0 0 22965 218585.15625 0.17820143632692606 -5 0.12758636474609375 4 NaN NaN 1 {I|L}P{I|L}{M(Oxidation (M))|F}[DP]{I|L} 7 -1 76.113 0 0 7.163 0 0 0 264.0965670221313 264.0965670221313 42.35296934167381 0 0 0 0 2.1747425010840047 1.6989700043360187 0.5649093276264391 0 {I|L}P{I|L}{M(Oxidation (M))|F}[DP]{I|L} 7.163 - 1062 + NaN NaN 222697.6 NaN 18784 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22970 91.531 NaN 312230 35 0 47847 0.261 -1 RECVKQCR 8 71 539.7657522386556 1077.5169515441112 2 539.7654418945312 MULTI HCD FTMS 0 0 0 22965 56411.13671875 0.16284905543100112 14 -0.36602020263671875 5 Carbamidomethyl (C) _REC(Carbamidomethyl (C))VKQCR_ ENST00000605901.1_1_6:2988904-2989938:+|nuORF 6.723162845929126 0.5320176132289695 1 C{M(Oxidation (M))|F} 2 -1 21.766 0 0 2.02 0 0 809.4314850907894 0 809.4314850907894 0 11.281446971601312 0 0 0 0.3807196863200844 0 0 0 C{M(Oxidation (M))|F} 2.02 - 190 + NaN NaN 126505.5 NaN 18785 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22971 91.534 NaN 204160 35 0 19705 0.261 + 6936 FPVNQLFDML 10 68 620.3076264800765 1238.6007000269528 2 620.3064575195312 MULTI HCD FTMS 0 0 0 22965 65588.234375 0.1553798178919767 -13 0.34497833251953125 6 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 55.50274090549119 0.0577772802216 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 5 5 49.31 0 0 3.9811 0 0 585.2901478498062 0 585.2901478498062 0 34.605319037595876 0 0 0 1.6747425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.9811 + + 98 NaN NaN 108921.1 NaN 18786 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22972 91.538 NaN 704540 35 0 194870 0.261 + 2132 DFSYNLELF 9 81 574.2689788586981 1146.5234047841961 2 573.2800903320312 MULTI HCD FTMS 0 0 0 22965 28209.705078125 0.13097940199976668 14 -0.36602020263671875 7 Unmodified _DFSYNLELF_ REV__ENSG00000134242|ENST00000359785|PTPN22;REV__ENST00000484147.5_1_1:114375712-114414257:-|nuORF;REV__nc|ENSG00000134242|Q9Y2R2-2|PTPN22;REV__nc|ENSG00000134242|Q9Y2R2-3|PTPN22;REV__nc|ENSG00000134242|Q9Y2R2-4|PTPN22;REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22;REV__nc|ENSG00000134242|Q9Y2R2|PTPN22 8.593279151180031 0.2858735984551981 1 C(Carbamidomethyl (C)){I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 49.258 0 0 4.2963 0 0 205.09550058673364 0 205.09550058673364 0 9.872891665851995 0 0 0 0 0 0.2302046884880938 0.25 C(Carbamidomethyl (C)){I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2963 - 1245 + NaN NaN 196562.8 NaN 18787 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22973 91.541 NaN 80574 35 0 24244 0.262 + -1 FFATVHCS 8 29 484.71829197731563 NaN 0 484.7177734375 PEAK HCD FTMS 0 0 0 22965 22931.623046875 0.13147065441956282 5 -0.12725067138671875 8 Carbamidomethyl (C) _FFATVHC(Carbamidomethyl (C))S_ REV__ENST00000393844.5_1_6:44201702-44201849:+|nuORF 2.577480529830294 0.38822285293237185 1 S 1 -1 9.732 0 0 1.006 0 0 424.28025963646877 453.0770662897094 877.3573259261782 0 0 0 0 0 0.2742275032520141 0 0 0 S 1.006 + + 2 + NaN NaN 95222.4 NaN 18788 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22974 91.544 NaN 377520 35 0 82259 0.261 + 2864 DYNSQIQQV 9 58 547.7584666101162 1093.5023802870323 2 547.75927734375 MULTI HCD FTMS 0 0 0 22965 53905.59765625 0.14864827746015014 -5 0.12758636474609375 9 Unmodified _DYNSQIQQV_ REV__ENSG00000138182|ENST00000371728|KIF20B;REV__nc|ENSG00000138182|Q96Q89-2|KIF20B;REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B 8.155526934196011 0.2891920862272901 1 QV 2 -1 19.464 0 0 1.78 0 0 848.3686492296667 0 848.3686492296667 0 2.8084876632699682 0 0 0 0 0 0 0 QV 1.78 + + 51 NaN NaN 139597.6 NaN 18789 4183 22965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22976 91.549 NaN 419270 35 0 27427 0.327 -1 0 88 422.58167378528765 1264.723191956063 3 422.5819091796875 MULTI HCD FTMS 0 0 0 22975 288607.3125 0.6692082099112215 7 -0.17279052734375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.42 0 0 0.90296 0 0 1099.6447140281316 0 1099.6447140281316 0 -4.419885243759465 -4.419885243759465 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.90296 - 43 + NaN NaN 146206.2 NaN 18790 4184 22975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22977 91.554 NaN 292440 35 0 20588 0.261 + 26975 SYLNSFFQL 9 68 559.7790739081463 1117.5435948830925 2 559.77978515625 MULTI HCD FTMS 0 0 0 22975 143537.5 0.43986402252833134 5 -0.11385345458984375 2 Unmodified _SYLNSFFQL_ ENSG00000165424|ENST00000372336|ZCCHC24 110.5527297667825 0.0028521687250969148 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 79.535 0 0 7.117 7.117 89.998 0 0 0 4.137342758552691 52.76933838679369 4.137342758552691 9.208187539523749 0 1.774227503252014 0 1.110924374808178 1.2302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[YK]V{[MS]|[{M(Oxidation (M))|F}A]}Q{I|L} 7.117;6.293;5.7508;5.5329;5.1407;4.9268;4.5467;4.3721;4.3168;4.0023 +;-;-;-;-;-;-;-;-;- + 1141 NaN NaN 134118.2 NaN 18791 4184 22975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22978 91.557 NaN 159520 35 0 14594 0.261 -1 0 64 619.8697049488608 1237.7248569645215 2 619.8692016601562 MULTI HCD FTMS 0 0 0 22975 64667.4375 0.02914599569778682 52 -1.3654632568359375 3 NaN NaN 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 -1 15.918 0 0 1.286 0 0 130.21846155612144 582.2657564752561 712.4842180313776 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 1.286 - 104 + NaN NaN 111929 NaN 18792 4184 22975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22979 91.561 NaN 475500 35 0 155240 0.264 -1 0 42 405.11878050200676 808.2230080708135 2 405.1189270019531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 V 1 -1 14.604 0 0 1.8069 0 0 691.1447437659292 0 691.1447437659292 0 7.697953115119063 0 0 0 0 0 0 0 V 1.8069 - 6 + NaN NaN 156043.4 NaN 18793 4184 22975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22980 91.564 NaN 214780 35 0 17319 0.261 + 13470 KYPENFFLL 9 63 585.8135101996211 1169.612467466042 2 585.8134155273438 MULTI HCD FTMS 0 0 0 22975 94122.1796875 0.15457345071140302 -20 0.5580673217773438 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.1930734562688509 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.416 0 0 2.4296 0 0 778.364549705275 0 778.364549705275 0 18.48258770979733 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4296 + + 192 NaN NaN 102538.4 NaN 18794 4184 22975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22981 91.567 NaN 278360 35 0 54261 0.262 + 27766 TAVAVFELL 9 51 481.7814415390622 961.5483301449244 2 481.7812805175781 MULTI HCD FTMS 0 0 0 22975 71126.5703125 0.33615088558516837 -4 0.10143280029296875 6 Unmodified _TAVAVFELL_ ENST00000527634.5_2_11:66512258-66526561:+|nuORF 43.85829265575387 0.04763305254408404 1 V{M(Oxidation (M))|F}E{I|L}{I|L} 5 4 54.821 0 0 5.7013 0 0 342.1904469220719 0 342.1904469220719 0 53.22682509756042 0 0 0 1.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}E{I|L}{I|L} 5.7013 + + 63 NaN NaN 109836.3 NaN 18795 4184 22975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22983 91.572 NaN 677400 35 0 97752 0.326 + 20230 NYLPAINGIVF 11 74 610.8375392815641 1219.660525629928 2 610.8375854492188 MULTI HCD FTMS 0 0 0 22982 153922.328125 0.32660797841495964 6 -0.14987945556640625 1 Unmodified _NYLPAINGIVF_ ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B;nc|ENSG00000079332|Q9NR31-2|SAR1A 40.23920728925047 0.13540949088500095 1 [Y{I|L}]N[PA]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 11 2 + 44.771 0 0 3.6707 3.6707 81.872 0 0 0 5.016894462103984 16.57577319177793 5.016894462103984 5.016894462103984 0 2.004432191740108 1.154901959985743 0 0 [Y{I|L}]N[PA]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[YN]{I|L}[PA]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 3.6707;3.2594 -;+ + 145 NaN NaN 187799.9 NaN 18796 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22984 91.577 NaN 483300 35 0 122410 0.261 + 7219 FSRSFSIWT 9 73 565.786230893094 NaN 0 565.7691650390625 PEAK HCD FTMS 0 0 0 22982 7745.6396484375 0.8551018678796629 -1 0.02291107177734375 2 Unmodified _FSRSFSIWT_ REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF 15.847184025352803 0.21527282152051216 1 WS{M(Oxidation (M))|F}SGVP 7 -1 33.611 0 0 2.9756 0 0 204.1240907585821 162.05567346744377 366.1797642260259 0 0 0 0 0 0.28872548999643577 0 1.0114393726401687 0 WS{M(Oxidation (M))|F}SGVP 2.9756 - 931 + NaN NaN 149510.4 NaN 18797 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22985 91.58 NaN 135990 35 0 8659.2 0.262 + 30979 VSAIHKLMRWI 11 51 451.9324500525328 1352.7755207577984 3 451.932373046875 MULTI HCD FTMS 0 0 0 22982 91745.203125 0.6405688487693005 -3 0.07196807861328125 3 Unmodified _VSAIHKLMRWI_ ENSG00000164077|ENST00000296473|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A 0.40826533853263924 0.41713015341995335 1 V 1 10 6.2591 0 0 0.46268 0 0 982.5562957595547 268.12201868228755 1250.6783144418423 0 0 0 0 0 0.5 0 0 0 + V 0.46268 + + 5 + NaN NaN 103349.8 NaN 18798 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22986 91.584 NaN 281470 35 0 27089 0.261 + 6937 FPVNQLFDML 10 59 620.3076264800765 1238.6007000269528 2 620.3080444335938 MULTI HCD FTMS 0 0 0 22982 127057.203125 0.3010010144586453 -11 0.28461456298828125 4 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 63.960520009940105 0.027018206803399523 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 5 5 54.949 0 0 4.4363 0 0 585.2915516584 0 585.2915516584 0 40.25576261223691 0 0 0 1.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4.4363 + + 91 NaN NaN 134795.9 NaN 18799 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22987 91.587 NaN 315790 35 0 64071 0.263 + 14908 LLAGPLAITL 10 56 491.3206874065537 980.6268218799074 2 491.3207702636719 MULTI HCD FTMS 0 0 0 22982 48292.24609375 0.18804575991610567 -6 0.1471099853515625 5 Unmodified _LLAGPLAITL_ ENSG00000133460|ENST00000316185|SLC2A11;ENST00000405286.6_1_22:24199637-24224826:+|nuORF;ENST00000461809.5_1_22:24200186-24224826:+|nuORF;ENST00000491948.5_1_22:24200072-24210829:+|nuORF;nc|ENSG00000133460|Q9BYW1-2|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11;nc|ENSG00000133460|Q9BYW1|SLC2A11;SLC2A11-LLPH|1|fusion;SLC2A11-LLPH|2|fusion;SLC2A11-LLPH|3|fusion 46.020951573049366 0.09315764076686055 1 A{I|L}T{I|L} 4 6 50.433 0 0 5.1429 0 0 564.3626547406169 0 564.3626547406169 0 43.979400086720375 0 0 0 1.5 0 0.3494850021680094 0 + A{I|L}T{I|L} 5.1429 + + 59 NaN NaN 133213.1 NaN 18800 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22988 91.59 NaN 154680 35 0 35810 0.261 + 18954 NAIEDTIFYL 10 40 599.803324690749 1197.592096448298 2 599.80322265625 MULTI HCD FTMS 0 0 0 22982 28758.400390625 0.07728867972637385 8 -0.20546722412109375 6 Unmodified _NAIEDTIFYL_ ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 11.494710602746466 0.4035943721457025 1 {M(Oxidation (M))|F}Y{I|L} 3 7 32.747 0 0 2.7344 0 0 756.3643665998062 0 756.3643665998062 0 29.983149635316018 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}Y{I|L} 2.7344 + + 21 NaN NaN 119923.9 NaN 18801 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22989 91.594 NaN 122470 35 0 11872 0.261 -1 FVMLVMMIF 9 52 581.7913665238844 1161.5681801145688 2 581.7922973632812 MULTI HCD FTMS 0 0 0 22982 53681.8828125 0.9053323422648734 -3 0.07196807861328125 7 2 Oxidation (M) _FVM(Oxidation (M))LVM(Oxidation (M))MIF_ ENST00000544440.6_1_13:77625173-77629724:-|nuORF 28.173230860318316 0.11963627304438548 1 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.4718 0 0 883.4059009171064 0 883.4059009171064 0 7.513487579716767 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.4718 + + 59 + NaN NaN 118143.2 NaN 18802 4185 22982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22991 91.598 NaN 9884300 35 0 1699200 0.327 + 15825 LPIFPDLQV 9 79 521.3024350943118 1040.5903172554235 2 521.3030395507812 MULTI HCD FTMS 0 0 0 22990 8067566.5 0.7626481326027853 -2 0.049072265625 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 144.35026110057638 1.4798765981150827E-05 1 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV 9 0 + 72.461 0 0 6.9635 6.9635 86.602 0 0 0 8.3088385423369 29.099980360941707 8.3088385423369 3.7628749457997657 0 2.2619229975844686 1.3010299956639813 0.75 0 + + [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}N{I|L};[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}[AG]V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}N{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQ{I|L}V;[{I|L}P]{I|L}{M(Oxidation (M))|F}P{[QV]|[N{I|L}]|[RA]|[KV]}EV;[{I|L}P]{M(Oxidation (M))|F}{I|L}PDQ{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}EV 6.9635;6.6018;6.0968;6.0786;5.7352;5.7169;5.6641;5.574;5.3025;5.2124 +;-;-;-;-;-;-;-;-;- + 1323 NaN NaN 790400.9 NaN 18803 4186 22990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22992 91.603 NaN 112350 35 0 7421.4 0.261 + 14900 LKSWFLFFLS 10 49 644.3602182684886 1286.705883603777 2 644.3603515625 MULTI HCD FTMS 0 0 0 22990 70718.2578125 0.2594541484691124 8 -0.212127685546875 2 Unmodified _LKSWFLFFLS_ REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF 1.6526216038709556 0.46655611578153744 1 T 1 -1 5.7969 0 0 0.45052 0 0 661.3622689570958 521.2587664696038 1182.6210354266996 0 0 0 0 0 0 0 0.2302046884880938 0 T 0.45052 - 13 + NaN NaN 101779.5 NaN 18804 4186 22990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22994 91.608 NaN 935190 35 0 39518 0.327 -1 0 97 633.3692585006554 1264.7239640681107 2 633.3692016601562 MULTI HCD FTMS 0 0 0 22993 1195228.125 0.37510162293853133 14 -0.392669677734375 1 NaN NaN 1 {[HG]|PP}N[WR]{I|L}MV 8 -1 10.125 0 0 0.80058 0 0 0 268.12360559635005 268.12360559635005 -2.6665673729773243 0 -2.6665673729773243 0 0 1.066901560044258 0 0 0 {[HG]|PP}N[WR]{I|L}MV 0.80058 - 229 + NaN NaN 244551.8 NaN 18805 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22995 91.612 NaN 1518000 35 0 361420 0.262 + 19945 NYGDIELLF 9 66 542.2716117787007 1082.5286706242014 2 542.2716674804688 MULTI HCD FTMS 0 0 0 22993 823168.1875 0.8813293121307912 -3 0.05861663818359375 2 Unmodified _NYGDIELLF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 129.77232118876745 0.0006187813247758304 1 [YN]GD{I|L}E{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 116.78 0 0 10.788 10.788 99.6 0 0 0 25.127881306118454 16.478174818886373 16.478174818886373 75.65070158200197 0 3.1549471895720984 1.3979400086720375 0.6861818737241735 1.579689690656103 + + [YN]GD{I|L}E{I|L}{I|L}{M(Oxidation (M))|F};[MT]{[RE]|[WV]}{[CA]|SS}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}E{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10.788;3.7995;1.1914 +;-;- + 248 NaN NaN 324546.1 NaN 18806 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22996 91.616 NaN 1131900 35 0 192960 0.261 + 30514 VMPSSFFLL 9 80 528.7748397343565 1055.535126535513 2 528.775146484375 MULTI HCD FTMS 0 0 0 22993 214234.90625 0.11329710941788088 14 -0.392669677734375 3 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 67.34385681178166 0.00994769994983633 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 33.94 0 0 3.2154 0 0 664.2878692598298 0 664.2878692598298 0 -5.400990676322905 -5.400990676322905 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.2154 + + 728 NaN NaN 256903.8 NaN 18807 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22997 91.619 NaN 472590 35 0 80375 0.261 + 35731 YYLNFISAI 9 71 552.2923169791757 1102.5700810251512 2 552.2924194335938 MULTI HCD FTMS 0 0 0 22993 171801.046875 0.2548421143682313 -4 0.09145355224609375 4 Unmodified _YYLNFISAI_ ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 74.92900055777586 0.007493270374442853 1 {I|L}SA{I|L} 4 5 42.409 0 0 3.8464 0 0 700.3218749246662 0 700.3218749246662 0 12.347594070116017 0 0 0 1.5 0 0.3252574989159953 0 + {I|L}SA{I|L} 3.8464 + + 137 NaN NaN 151406.9 NaN 18808 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22998 91.622 NaN 77692 35 0 9598.6 0.263 -1 0 38 419.31621135084725 418.30893488424726 1 419.3155517578125 MULTI HCD FTMS 0 0 0 22993 158496.34375 0.7184001290657134 13 -0.36977386474609375 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 3.7017 0 0 253.229968675066 0 253.229968675066 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.7017 - 3 + NaN NaN 89404.3 NaN 18809 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 22999 91.626 NaN 411720 35 0 65956 0.261 + -1 YSSVMKQIM 9 72 559.7648979288019 NaN 0 559.77783203125 PEAK HCD FTMS 0 0 0 22993 7655.9228515625 0.49066571850644236 -1 0.00954437255859375 6 2 Oxidation (M) _YSSVM(Oxidation (M))KQIM(Oxidation (M))_ REV__ENSG00000010017|ENST00000011619|RANBP9;REV__nc|ENSG00000010017|Q96S59-2|RANBP9;REV__nc|ENSG00000010017|Q96S59-3|RANBP9 24.020572477871973 0.16041128140741606 1 {I|L}Q{M(Oxidation (M))|F}SN{I|L} 6 -1 32.701 0 0 2.9262 0 0 165.05851311510315 247.07227502994377 412.13078814504695 0 0 0 0 0 0 0 0.6549471895720984 0.7302046884880937 {I|L}Q{M(Oxidation (M))|F}SN{I|L} 2.9262 - 294 + NaN NaN 143106.4 NaN 18810 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23000 91.629 NaN 230470 35 0 18526 0.261 -1 0 66 494.300842902745 986.58713287229 2 494.3011779785156 MULTI HCD FTMS 0 0 0 22993 100906.7890625 0.07848721907243332 -7 0.1600494384765625 7 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 5.3615 0 0 0.54344 0 0 396.23436295217124 427.3048189752563 823.5391819274275 0 0 0 0 0 0.28872548999643577 0 0 0 C(Carbamidomethyl (C)) 0.54344 - 8 + NaN NaN 113305 NaN 18811 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23001 91.632 NaN 208050 35 0 27047 0.261 + 23529 RNMRNFVL 8 47 525.2869224129051 1048.5592918926102 2 525.28662109375 MULTI HCD FTMS 0 0 0 22993 49775.0234375 0.06085672961713157 9 -0.25165557861328125 8 Unmodified _RNMRNFVL_ ENSG00000177108|ENST00000319374|ZDHHC22 19.438996006549623 0.45076845602799126 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 4 38.8 0 0 3.7003 0 0 524.2788563459 0 524.2788563459 0 33.31546893236258 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.7003 - 39 NaN NaN 114416.9 NaN 18812 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23002 91.636 NaN 121800 35 0 10915 0.261 + 29831 VERRRLERRT 10 52 457.60801575073 1369.80221785239 3 457.60772705078125 MULTI HCD FTMS 0 0 0 22993 33491.609375 0.5448446883048854 1 -0.035797119140625 9 Unmodified _VERRRLERRT_ ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant 1.9063754702782614 0.46521295622613185 1 W 1 10 11.99 0 0 0.87529 0 0 1165.7109530592243 0 1165.7109530592243 0 8.89075625191822 0 0 0 0 0 0 0 W 0.87529 - 11 + NaN NaN 110581.2 NaN 18813 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23003 91.639 NaN 221050 35 0 33883 0.261 -1 FVVMCCSML 9 65 545.2345550624229 1088.4545571916458 2 545.7362670898438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _FVVMC(Carbamidomethyl (C))CSML_ ENSG00000005206|ENST00000613503|SPPL2B;nc|ENSG00000005206|Q8TCT7-2|SPPL2B;nc|ENSG00000005206|Q8TCT7-4|SPPL2B 8.593279151180031 0.2858735984551981 1 [YN]Q[EP]V{I|L}{M(Oxidation (M))|F} 8 -1 37.625 0 0 3.4567 0 0 0 94.95929286963329 94.95929286963329 7.16113029490927 0 0 0 0 0 2 0 0 [YN]Q[EP]V{I|L}{M(Oxidation (M))|F} 3.4567 - 168 NaN NaN 125717 NaN 18814 4187 22993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23005 91.644 NaN 2083600 35 0 725990 0.327 + 2099 DFDVAVVTF 9 71 506.7529338445066 1011.4913147558132 2 506.7530212402344 MULTI HCD FTMS 0 0 0 23004 1274804.75 0.9212488881216662 -3 0.071502685546875 1 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 164.5152109175784 6.8106583686994766E-09 1 {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F} 9 0 + 76.766 0 0 7.5894 7.5894 92.037 0 0 0 10.854005911173545 11.786502480354585 10.854005911173545 10.854005911173545 0 2.6307196863200843 0 1.6056270500406935 0 + + {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}D[PS]VT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[PS]DVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D[PS]VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[PS]DVT{M(Oxidation (M))|F};[{I|L}A]YD[PS]VT{M(Oxidation (M))|F};[{I|L}A]Y[PS]DVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VD[PS]VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V[PS]DVT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}D[VG]{I|L}D{M(Oxidation (M))|F} 7.5894;6.5163;6.4711;4.3197;4.2745;4.2414;4.1962;4.0221;3.9768;3.6865 +;-;-;-;-;-;-;-;-;- + 580 NaN NaN 392353.1 NaN 18815 4188 23004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23006 91.648 NaN 1117100 35 0 67437 0.261 -1 QMCFFLLF 8 103 553.2635587796477 1104.5125646260954 2 553.2626342773438 MULTI HCD FTMS 0 0 0 23004 175163.96875 0.2897800901261669 -12 0.31383514404296875 2 Carbamidomethyl (C) _QMC(Carbamidomethyl (C))FFLLF_ ENSG00000127515|ENST00000641129|OR7A10 19.438996006549623 0.45076845602799126 1 NY 2 -1 31.81 0 0 2.88 0 0 0 824.3839868871486 824.3839868871486 6.236672758336681 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 NY 2.88 - 1424 + NaN NaN 250918.1 NaN 18816 4188 23004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23007 91.652 NaN 405270 35 0 44084 0.261 -1 YAELCQGIVD 10 68 584.2704027509628 1166.5262525687256 2 584.2706909179688 MULTI HCD FTMS 0 0 0 23004 226722.546875 0.9198009738697224 -2 0.04534149169921875 3 Carbamidomethyl (C) _YAELC(Carbamidomethyl (C))QGIVD_ ENSG00000114999|ENST00000233336|TTL 26.268140514670165 0.2654086933305545 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ 7 -1 62.356 0 0 5.3455 0 0 0 331.1120429342131 331.1120429342131 13.872957198087114 0 0 0 0 2.3807196863200843 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ 5.3455 - 331 NaN NaN 145151 NaN 18817 4188 23004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23008 91.655 NaN 401700 35 0 79254 0.261 + 29674 VASYGFSQIF 10 62 559.7790739081463 1117.5435948830925 2 559.7761840820312 MULTI HCD FTMS 0 0 0 23004 63467.29296875 0.19449258057454294 9 -0.23876953125 4 Unmodified _VASYGFSQIF_ tr|U7T235|U7T235_FUSNUYidE/YbjLduplicationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00532PE=3SV=1 31.26834338654808 0.2211790902911672 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F} 9 4 + 36.442 0 0 3.2609 3.2609 82.822 0 0 0 0.511817518535608 7.88848016779836 0.511817518535608 8.098695594800187 0 0.9247425010840047 0 0.3494850021680094 0.28872548999643577 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GA{I|L} 3.2609;2.5362;2.4369;2.4369;2.3126;2.2668;1.7122;1.7122;1.4429;1.2192 -;-;-;-;-;-;-;-;-;- 235 NaN NaN 142453.8 NaN 18818 4188 23004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23009 91.658 NaN 287800 35 0 100850 0.261 -1 MCHCLWWF 8 50 599.7350738288073 1197.4555947244146 2 599.7357788085938 MULTI HCD FTMS 0 0 0 23004 121283.515625 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))HCLWWF_ ENST00000261837.11_1_15:52433460-52439712:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 11.594 0 0 0.9682 0 0 885.3140125959 0 885.3140125959 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.9682 - 32 NaN NaN 132197.5 NaN 18819 4188 23004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23011 91.663 NaN 1530300 35 0 253940 0.327 + 16009 LPRHWAGQV 9 89 532.2935359920849 1062.5725190509697 2 532.2936401367188 MULTI HCD FTMS 0 0 0 23010 776612.875 0.6331332473313063 1 -0.032806396484375 1 Unmodified _LPRHWAGQV_ REV__ENST00000519560.5_1_5:168137961-168138033:-|nuORF 50.855029805455786 0.030374663808198754 1 {I|L}P{I|L}{M(Oxidation (M))|F}PD{I|L} 7 -1 78.29 0 0 7.368 0 0 0 264.09592615299067 264.09592615299067 50.088742943396014 0 0 0 0 2.1989700043360187 1.6989700043360187 0.2742275032520141 0 {I|L}P{I|L}{M(Oxidation (M))|F}PD{I|L} 7.368 - 992 + NaN NaN 306951.1 NaN 18820 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23012 91.668 NaN 560540 35 0 26608 0.261 -1 0 107 641.8824831880886 1281.750413442977 2 641.8826904296875 MULTI HCD FTMS 0 0 0 23010 566349.9375 0.29046202558627876 11 -0.31453704833984375 2 NaN NaN 1 A[RV]N 4 -1 13.94 0 0 1.0876 0 0 823.4819203107437 0 823.4819203107437 0 3.411290632962718 0 0 0 0.4247425010840047 0 0 0.3494850021680094 A[RV]N 1.0876 - 142 NaN NaN 164710.8 NaN 18821 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23013 91.671 NaN 890070 35 0 176420 0.264 + 885 AYAIITALL 9 55 474.7918576257879 947.5691623183758 2 474.7917785644531 MULTI HCD FTMS 0 0 0 23010 299460.5625 0.4752708567429105 -2 0.05523681640625 3 Unmodified _AYAIITALL_ ENSG00000181804|ENST00000316549|SLC9A9 123.09622228370866 0.0010236603636890153 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA{I|L}{I|L} 9 0 + 99.976 0 0 10.551 10.551 98.293 0 0 0 19.621892823592972 65.36175320500661 19.621892823592972 34.80327215271494 0 2.7302046884880937 1.3979400086720375 1.1861818737241734 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA{I|L}{I|L};[{I|L}A]T{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L} 10.551;6.8779 +;- + 222 NaN NaN 224798.1 NaN 18822 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23014 91.674 NaN 834770 35 0 145220 0.261 + -1 IEVYCFLI 8 77 528.7748397343565 1055.535126535513 2 528.7842407226562 MULTI HCD FTMS 0 0 0 23010 155509.921875 0.08224068123463416 16 -0.43901824951171875 4 Carbamidomethyl (C) _IEVYC(Carbamidomethyl (C))FLI_ REV__ENSG00000173578|ENST00000309285|XCR1 18.13498045792455 0.4603629008820478 1 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 -1 40.31 0 0 3.8189 0 0 131.0843084543297 0 131.0843084543297 0 4.8649408280835615 0 0 0 0.6861818737241735 0 1.7786596949921218 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 3.8189 - 532 + NaN NaN 220198.3 NaN 18823 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23015 91.678 NaN 364380 35 0 50667 0.261 -1 LYLPCTWSIG 10 76 605.301022030474 NaN 0 605.3185424804688 PEAK HCD FTMS 0 0 0 23010 49779.7265625 0.7756447637902557 -1 0.019439697265625 5 Carbamidomethyl (C) _LYLPC(Carbamidomethyl (C))TWSIG_ ENSG00000173085|ENST00000647002|COQ2;nc|ENSG00000173085|Q96H96-3|COQ2;nc|ENSG00000173085|Q96H96-4|COQ2;nc|ENSG00000173085|Q96H96-5|COQ2;nc|ENSG00000173085|Q96H96-6|COQ2 15.847184025352803 0.31427456382696234 1 NQ{I|L}YP{I|L} 6 -1 36.631 0 0 3.0309 0 0 204.05596404528916 273.12417167755547 477.1801357228446 0 0 0 0 0 0.8494850021680094 0 0 0 NQ{I|L}YP{I|L} 3.0309 - 755 + NaN NaN 144678.2 NaN 18824 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23016 91.681 NaN 608080 35 0 48401 0.261 + 16680 LWSFCLAIF 9 78 578.7966150959753 1155.5786772587505 2 578.7977905273438 MULTI HCD FTMS 0 0 0 23010 149329 0.6856146872339824 -2 0.05523681640625 6 Carbamidomethyl (C) _LWSFC(Carbamidomethyl (C))LAIF_ ENSG00000119915|ENST00000370005|ELOVL3 63.562846038646086 0.012597299157545023 1 M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NG]A{I|L}{M(Oxidation (M))|F} 10 5 + 48.594 0 0 4.2051 4.2051 86.566 0 0 0 30.172203223519528 9.181212380090216 9.181212380090216 12.189330722176798 0 1.3494850021680094 0 0 0.3494850021680094 M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NG]A{I|L}{M(Oxidation (M))|F};M{I|L}D{I|L}[RH][QP]{M(Oxidation (M))|F};M{I|L}D{I|L}[RH]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[QG]|[NA]}[KC]{I|L}A{I|L}{M(Oxidation (M))|F};[YN][YT][HK]A{I|L}{M(Oxidation (M))|F} 4.2051;3.1503;2.3699;2.3303;2.1512 -;-;-;-;- 406 + NaN NaN 173271.3 NaN 18825 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23017 91.684 NaN 717320 35 0 148900 0.261 -1 MPVCCMQAF 9 75 559.711139627232 1117.407726321264 2 559.7109375 MULTI HCD FTMS 0 0 0 23010 160236.46875 0.5155812603768485 -2 0.05523681640625 7 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))PVC(Carbamidomethyl (C))CM(Oxidation (M))QAF_ ENST00000244745.3_2_6:21594075-21594285:+|nuORF 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}A{M(Oxidation (M))|F} 3 -1 28.346 0 0 2.5368 0 0 734.2230472214577 0 734.2230472214577 0 13.653565665482859 0 0 0 1.055462187404089 0 0 0 {M(Oxidation (M))|F}A{M(Oxidation (M))|F} 2.5368 - 503 + NaN NaN 210575.5 NaN 18826 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23018 91.688 NaN 422540 35 0 62728 0.261 + 7218 FSRLTALTL 9 77 511.30367498648724 NaN 0 511.2890930175781 PEAK HCD FTMS 0 0 0 23010 6202.6103515625 0.5791130720002494 -1 0.019439697265625 8 Unmodified _FSRLTALTL_ ENSG00000173275|ENST00000339249|ZNF449 24.020572477871973 0.16041128140741606 1 VA 2 8 8.5835 0 0 0.84103 0 0 165.10797182276173 682.3556002252561 847.4635720480178 0 0 0 0 0 0 0 0 0 VA 0.84103 - 20 + NaN NaN 150077.8 NaN 18827 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23019 91.691 NaN 107930 35 0 6600.2 0.261 + 732 ARARCALL 8 57 437.25754115650903 NaN 0 437.25726318359375 PEAK HCD FTMS 0 0 0 23010 82043.0625 0.8012314909747783 1 -0.032806396484375 9 Unmodified _ARARCALL_ REV__ENSG00000184144|ENST00000331830|CNTN2 5.230669730166228 0.38822285293237185 1 V 1 -1 0.71334 0 0 0.081758 0 0 502.28041081266684 268.1245211236938 770.4049319363606 0 0 0 0 0 0 0 0 0 V 0.081758 - 2 + NaN NaN 106535.5 NaN 18828 4189 23010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23021 91.696 NaN 4012700 35 0 1146900 0.327 + 944 AYEIIDQFF 9 85 573.2791786536349 1144.5438043740696 2 573.2794189453125 MULTI HCD FTMS 0 0 0 23020 2525672 0.8869719783527553 -1 0.032806396484375 1 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 114.20165948288297 0.0022564706844261533 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 109.15 0 0 9.5364 9.5364 95.947 0 0 0 18.65279269351241 64.09501908095606 18.65279269351241 16.197887582883936 0 3.3494850021680094 1.3010299956639813 0.7059771852360797 0.6989700043360187 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]A{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YA{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}A{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YA{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]A{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}A{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[{I|L}A]YDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F} 9.5364;8.1212;7.4368;6.8299;6.7793;6.0254;6.0216;5.364;4.5794;4.5458 +;-;-;-;-;-;-;-;-;- + 946 NaN NaN 699964.1 NaN 18829 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23022 91.7 NaN 3415900 35 0 825470 0.261 + 19939 NYFTGVFAF 9 119 533.2555490984805 1064.496545263761 2 533.2556762695312 MULTI HCD FTMS 0 0 0 23020 1762849.625 0.8938705067671592 -1 0.032806396484375 2 Unmodified _NYFTGVFAF_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 126.56589448801843 0.0008132384440316759 1 [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 9 0 + 88.466 0 0 8.3106 8.3106 96.002 0 0 0 16.258330990418557 67.57544854914718 16.258330990418557 31.814382231515225 0 2.638210492164445 1.0457574905606752 1.4476212463643423 1.110924374808178 + + [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ]GV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}ASV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[{I|L}P]{[QS]|[NT]}NT{[MG]|[TS]}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};DP{I|L}{[CP]|[EA]}R{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}ASVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8.3106;5.3219;5.1466;4.9205;4.8649;4.639;4.6332;4.2726;4.2387;4.1563 +;-;-;-;-;-;-;-;-;- + 3682 NaN NaN 604988.9 NaN 18830 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23023 91.704 NaN 648760 35 0 149700 0.261 + 2135 DFVASQEKGN 10 72 547.7584666101162 1093.5023802870323 2 547.75830078125 MULTI HCD FTMS 0 0 0 23020 299407.84375 0.8256370797576168 2 -0.05551910400390625 3 Unmodified _DFVASQEKGN_ REV__ENSG00000094963|ENST00000209929|FMO2;REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF;REV__FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant 12.240655878213236 0.39661705172222156 1 QV 2 -1 17.959 0 0 1.6423 0 0 848.3702870099625 0 848.3702870099625 0 1.5051499783199063 0 0 0 0 0 0 0 QV 1.6423 - 416 NaN NaN 179174 NaN 18831 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23024 91.707 NaN 320040 35 0 17920 0.263 -1 0 69 422.58167378528765 1264.723191956063 3 422.58172607421875 MULTI HCD FTMS 0 0 0 23020 195627.984375 0.4536123915160125 13 -0.35036468505859375 4 NaN NaN 1 Q 1 -1 8.0989 0 0 0.64037 0 0 590.3489376609442 543.3028658502561 1133.6518035112003 0 0 0 0 0 0.5 0 0 0 Q 0.64037 - 8 + NaN NaN 136640.9 NaN 18832 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23025 91.711 NaN 138790 35 0 12197 0.261 + 11267 IYLPYLQNW 9 55 605.3185649124005 1208.6225768916008 2 603.805908203125 MULTI HCD FTMS 0 0 0 23020 45467.98046875 0.37652123298687185 6 -0.16361236572265625 5 Unmodified _IYLPYLQNW_ ENSG00000151116|ENST00000396197|UEVLD;ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD 8.593279151180031 0.2858735984551981 1 [Y{I|L}]{I|L} 3 6 27.447 0 0 2.271 0 0 0 816.3691033410727 816.3691033410727 17.001962355242952 0 0 0 0 0 1.6989700043360187 0 0 + [Y{I|L}]{I|L} 2.271 + + 149 NaN NaN 103344.5 NaN 18833 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23026 91.714 NaN 499820 35 0 35514 0.261 + 9896 IASTAYLELF 10 100 564.3027437438678 1126.5909345545356 2 564.3032836914062 MULTI HCD FTMS 0 0 0 23020 108601.765625 0.31525218086247536 12 -0.334136962890625 6 Unmodified _IASTAYLELF_ ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B 43.85829265575387 0.11192494793849486 1 {I|L}E{I|L}{M(Oxidation (M))|F} 4 6 41.402 0 0 3.675 0 0 606.3014700340624 0 606.3014700340624 0 27.907300390241687 0 0 0 1.6505149978319906 0 0.3494850021680094 0 + {I|L}E{I|L}{M(Oxidation (M))|F} 3.675 + + 2121 + NaN NaN 161031.4 NaN 18834 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23027 91.717 NaN 263570 35 0 44814 0.261 -1 0 64 485.7830369961243 969.5515210590486 2 485.78271484375 MULTI HCD FTMS 0 0 0 23020 136059.296875 1 0 0 7 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA 7 -1 72.127 0 0 7.4392 0 0 0 263.1370943658813 263.1370943658813 52.66334779402399 0 0 0 0 2.4291746928241125 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA 7.4392 - 97 + NaN NaN 123899.2 NaN 18835 4190 23020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23029 91.722 NaN 1417600 35 0 473720 0.326 + 35208 YVLKGGGM 8 82 412.720539513622 823.426526094044 2 412.7206115722656 MULTI HCD FTMS 0 0 0 23028 948094.875 0.7047768383552021 -4 0.11417388916015625 1 Unmodified _YVLKGGGM_ ENSG00000163840|ENST00000296161|DTX3L 14.581692164780916 0.48650662947107914 1 [YV]WP{I|L}{M(Oxidation (M))|F} 6 5 + 62.708 0 0 7.6155 7.6155 89.937 0 0 0 3.5784094103974695 3.5784094103974695 3.5784094103974695 9.06295947543775 0 1.7302046884880937 1.3010299956639813 0 0 [YV]WP{I|L}{M(Oxidation (M))|F};[YV]W{I|L}P{M(Oxidation (M))|F};[YV]{I|L}WP{M(Oxidation (M))|F};[{I|L}P]W[YV]{M(Oxidation (M))|F};[{I|L}P]V[WY]{M(Oxidation (M))|F} 7.6155;6.5149;6.5149;1.3084;1.0701 -;-;-;-;- 127 NaN NaN 301505.9 NaN 18836 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23030 91.726 NaN 491230 35 0 49934 0.261 + 6938 FPVNQLFDML 10 59 620.3076264800765 1238.6007000269528 2 620.3076171875 MULTI HCD FTMS 0 0 0 23028 176498.40625 0.41812819757505665 -5 0.12371826171875 2 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 114.20165948288297 4.599979908114899E-05 1 NQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 7 3 86.49 0 0 6.9829 0 0 343.18965346504064 0 343.18965346504064 0 68.49734465476811 0 0 0 2.774227503252014 0 0.4247425010840047 1.1549471895720984 + NQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 6.9829 + + 339 NaN NaN 151917.4 NaN 18837 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23031 91.73 NaN 831640 35 0 81839 0.263 -1 LGYVLATLL 9 98 502.80511966292977 NaN 0 502.81427001953125 PEAK HCD FTMS 0 0 0 23028 27540.654296875 0.3968248808890615 3 -0.088409423828125 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGYVLATLL_ ENSG00000162576|ENST00000309212|MXRA8;ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENST00000476718.1_1_1:1289695-1290347:-|nuORF;nc|ENSG00000162576|Q9BRK3-2|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8 36.04419817259434 0.09096180745216527 1 {I|L}TA 3 -1 14.899 0 0 1.4846 0 0 131.09509962632643 584.3103121393186 715.4054117656451 0 0 0 0 0 0.899649864804614 0 0.6694451763165201 0 {I|L}TA 1.4846 - 54 + NaN NaN 208616.5 NaN 18838 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23032 91.733 NaN 217970 35 0 40632 0.261 + 15905 LPLQLAITL 9 40 491.3206874065537 980.6268218799074 2 491.3208312988281 MULTI HCD FTMS 0 0 0 23028 256811.140625 1 0 0 4 Unmodified _LPLQLAITL_ ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 36.12702656103203 0.08312389501731911 1 A{I|L}T{I|L} 4 5 49.68 0 0 5.0662 0 0 564.3639078616667 0 564.3639078616667 0 42.69077524932108 0 0 0 1.4247425010840047 0 0.3494850021680094 0 + A{I|L}T{I|L} 5.0662 + + 35 NaN NaN 119103.3 NaN 18839 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23033 91.737 NaN 455720 35 0 158050 0.262 -1 0 34 405.11878050200676 808.2230080708135 2 405.1188659667969 MULTI HCD FTMS 0 0 0 23028 263724.6875 0.8554683358144972 3 -0.088409423828125 5 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 8.2268 0 0 1.0179 0 0 392.1556359101335 253.01545129947502 645.1710872096086 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 1.0179 - 3 + NaN NaN 156065.5 NaN 18840 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23034 91.74 NaN 344480 35 0 63626 0.261 + 27767 TAVAVFELL 9 52 481.7814415390622 961.5483301449244 2 481.7815246582031 MULTI HCD FTMS 0 0 0 23028 198007.171875 0.9358005859913984 3 -0.088409423828125 6 Unmodified _TAVAVFELL_ ENST00000527634.5_2_11:66512258-66526561:+|nuORF 49.93300154707207 0.03166451819912738 1 V{M(Oxidation (M))|F}E{I|L}{I|L} 5 4 51.81 0 0 5.3882 0 0 342.1899586408219 0 342.1899586408219 0 46.12395659563255 0 0 0 1.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}E{I|L}{I|L} 5.3882 + + 94 NaN NaN 131980.5 NaN 18841 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23035 91.743 NaN 474910 35 0 44579 0.261 -1 FLETTMVILT 10 82 592.319162863846 1182.623772794492 2 592.82177734375 MULTI HCD FTMS 0 0 0 23028 170065.78125 0.9465662198741154 1 -0.029388427734375 7 Oxidation (M) _FLETTM(Oxidation (M))VILT_ ENST00000333891.13_1_7:82467561-82467600:-|nuORF 18.1463463914782 0.3413772152514074 1 MQYWV{I|L}[{I|L}T] 8 -1 30.175 0 0 2.5515 0 0 130.092417033181 0 130.092417033181 0 12.956706753727545 0 0 0 0.3494850021680094 0 0.6861818737241735 0 MQYWV{I|L}[{I|L}T] 2.5515 - 217 + NaN NaN 158282.8 NaN 18842 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23036 91.747 NaN 511700 35 0 91948 0.261 -1 MPPWENIWL 9 59 601.2899906088854 1200.5654282845708 2 601.28857421875 MULTI HCD FTMS 0 0 0 23028 199245.140625 0.7146674843247942 -4 0.11417388916015625 8 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 32.78568957990786 0.09846250359632436 1 EN{I|L}W{I|L} 5 -1 54.583 0 0 4.5465 0 0 527.2216053693375 0 527.2216053693375 0 47.13590517863841 0 0 0 1.6747425010840047 0 0 0.28872548999643577 EN{I|L}W{I|L} 4.5465 + + 101 NaN NaN 151992.1 NaN 18843 4191 23028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23038 91.751 NaN 7204600 35 0 1254700 0.327 + 15826 LPIFPDLQV 9 76 521.3024350943118 1040.5903172554235 2 521.3027954101562 MULTI HCD FTMS 0 0 0 23037 4816625.5 0.4553281888685959 4 -0.10809326171875 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 123.45060196383646 0.0010021686353097689 1 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV 9 0 + 80.059 0 0 7.6936 7.6936 89.347 0 0 0 14.471172114978643 38.62305200390544 14.471172114978643 7.257724967479859 0 2.110924374808178 1.154901959985743 0.4247425010840047 0 + + [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}N{I|L};[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQ{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}N{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}GG{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PDQ{I|L}V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQV{I|L} 7.6936;6.9961;6.8269;6.8087;6.4653;6.1294;6.1112;5.942;5.7678;5.5986 +;-;-;-;-;-;-;-;-;- + 1265 NaN NaN 335559.8 NaN 18844 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23039 91.756 NaN 1209200 35 0 52175 0.261 -1 0 101 633.3692585006554 1264.7239640681107 2 633.3694458007812 MULTI HCD FTMS 0 0 0 23037 1919137.75 0.6022881068562551 19 -0.5077590942382812 2 NaN NaN 1 Y 1 -1 11.109 0 0 0.87839 0 0 1083.6533596753357 0 1083.6533596753357 0 0.2983187711004085 0 0 0 0 0 0 0 Y 0.87839 - 201 + NaN NaN 261749.7 NaN 18845 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23040 91.759 NaN 688460 35 0 154190 0.262 + 19946 NYGDIELLF 9 53 542.2716117787007 1082.5286706242014 2 542.2717895507812 MULTI HCD FTMS 0 0 0 23037 339319.5 0.3632941919631266 2 -0.05902099609375 3 Unmodified _NYGDIELLF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 85.64151623876279 0.004640175941193596 1 [YN][DG]{I|L}E{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 82.647 0 0 7.6346 7.6346 94.609 0 0 0 25.792352951179822 62.224024238111895 25.792352951179822 27.250547101681875 0 2.3494850021680094 1.3979400086720375 0.3807196863200844 1.5044321917401078 + + [YN][DG]{I|L}E{I|L}{I|L}{M(Oxidation (M))|F};[YN][{I|L}A]DD{I|L}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[QD]|[EN]|[WG]|[KD]|[RS]}DD{I|L}{I|L}{M(Oxidation (M))|F} 7.6346;5.1173;3.9886 +;-;- + 212 NaN NaN 184219 NaN 18846 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23041 91.763 NaN 1247500 35 0 148760 0.261 + -1 MKQEGNFAF 9 95 544.2469281117125 1086.4793032902248 2 544.246826171875 MULTI HCD FTMS 0 0 0 23037 403589.875 0.7580883194579044 1 -0.0261993408203125 4 Oxidation (M) _M(Oxidation (M))KQEGNFAF_ REV__ENST00000318948.6_1_21:16340786-16386756:-|nuORF;REV__ENST00000400199.5_1_21:16340786-16415865:-|nuORF;REV__ENST00000411932.1_3_21:16340786-16374577:-|nuORF 32.30548876998284 0.10066689432505688 1 NY{M(Oxidation (M))|F}TR{M(Oxidation (M))|F} 6 -1 66.915 0 0 6.1589 0 0 0 255.07502161197505 255.07502161197505 30.32834330111166 0 0 0 0 1.4258337024346173 2 0.3807196863200844 0 NY{M(Oxidation (M))|F}TR{M(Oxidation (M))|F} 6.1589 - 945 + NaN NaN 270375 NaN 18847 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23042 91.766 NaN 246200 35 0 59472 0.261 -1 0 43 480.2809322442964 958.5473115553929 2 480.2810974121094 MULTI HCD FTMS 0 0 0 23037 60883.00390625 0.13240921799052474 -8 0.202178955078125 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.6154 0 0 793.4682843110554 0 793.4682843110554 0 4.871287377704965 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6154 - 19 + NaN NaN 117735 NaN 18848 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23043 91.769 NaN 387540 35 0 45345 0.261 -1 FLETTMVILT 10 67 592.319162863846 1182.623772794492 2 593.32275390625 MULTI HCD FTMS 0 0 0 23037 128507.8828125 0.7322275008099502 1 -0.0261993408203125 6 Oxidation (M) _FLETTM(Oxidation (M))VILT_ ENST00000333891.13_1_7:82467561-82467600:-|nuORF 13.90604991867851 0.3810395177745597 1 MQYWV{I|L}[{I|L}T] 8 -1 30.94 0 0 2.6162 0 0 130.08913114235207 0 130.08913114235207 0 10.226694033090169 0 0 0 0 0 0.6861818737241735 0 MQYWV{I|L}[{I|L}T] 2.6162 - 152 + NaN NaN 134436.9 NaN 18849 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23044 91.773 NaN 248310 35 0 56404 0.264 + 25606 SGCISKPF 8 56 419.7101874571151 837.4058219810303 2 419.71014404296875 MULTI HCD FTMS 0 0 0 23037 112688.671875 0.653395856469666 -1 0.029388427734375 7 Unmodified _SGCISKPF_ REV__ENST00000561876.1_1_16:48671141-48672401:+|nuORF 16.942295170755138 0.46913822049235215 1 P{I|L}{M(Oxidation (M))|F} 3 -1 36.44 0 0 4.3516 0 0 462.1904129648899 0 462.1904129648899 0 28.19599075987611 0 0 0 1.3252574989159953 0 0 0 P{I|L}{M(Oxidation (M))|F} 4.3516 - 61 NaN NaN 110552.8 NaN 18850 4192 23037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23046 91.778 NaN 1066900 35 0 96309 0.327 -1 0 86 494.300842902745 986.58713287229 2 494.3011169433594 MULTI HCD FTMS 0 0 0 23045 1072588 0.8342793395033178 -1 0.0261993408203125 1 NaN NaN 1 P 1 -1 6.4659 0 0 0.65538 0 0 581.3468812627182 305.1610329978717 886.5079142605898 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.65538 - 25 + NaN NaN 253769.6 NaN 18851 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23047 91.782 NaN 1391200 35 0 156690 0.261 + 35732 YYLNFISAI 9 97 552.2923169791757 1102.5700810251512 2 552.2925415039062 MULTI HCD FTMS 0 0 0 23045 399503.15625 0.5926054054234462 2 -0.0457305908203125 2 Unmodified _YYLNFISAI_ ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 107.99703571036002 0.003269392969029945 1 YYA[R{M(Oxidation (M))|F}]{I|L}SA 8 3 50.913 0 0 4.6176 0 0 0 128.06956767970124 128.06956767970124 18.497909598831676 0 0 0 0 1.4247425010840047 1.3979400086720375 0.5356668758921829 1.3684151806525389 YYA[R{M(Oxidation (M))|F}]{I|L}SA 4.6176 - 859 NaN NaN 291483.4 NaN 18852 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23048 91.786 NaN 605500 35 0 126410 0.261 + 15741 LPFGPEGPIPF 11 74 585.8135101996211 1169.612467466042 2 585.8134155273438 MULTI HCD FTMS 0 0 0 23045 227725.25 0.37398493982488745 -11 0.277435302734375 3 Unmodified _LPFGPEGPIPF_ REV__ENSG00000111229|ENST00000228825|ARPC3;REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF 30.636539890814138 0.19725369097074727 1 [{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L} 10 -1 + 44.772 0 0 3.8279 3.8279 59.931 0 0 0 4.003924710485904 25.307554689497763 4.003924710485904 0 0 1 1.3010299956639813 0.28872548999643577 0 [{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[WP][TA]EP{I|L};[{I|L}P]YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{I|L}{I|L};[{I|L}P]YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VQ{I|L} 3.8279;3.8279;2.1457;1.5895 -;-;-;- 658 NaN NaN 171558.2 NaN 18853 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23049 91.789 NaN 795900 35 0 95230 0.261 -1 LLVCFYEI 8 62 528.7748397343565 1055.535126535513 2 528.7752685546875 MULTI HCD FTMS 0 0 0 23045 108465.1953125 0.05736130174329204 20 -0.5273818969726562 4 Carbamidomethyl (C) _LLVC(Carbamidomethyl (C))FYEI_ ENSG00000137414|ENST00000259963|FAM8A1 24.67388899826682 0.4122521268485776 1 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 + 34.672 0 0 3.2848 3.2848 80.587 0 0 0 1.9247126804443582 -0.9062061868779381 -0.9062061868779381 3.0102999566398125 0 0.805462187404089 0 0.3252574989159953 0 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[KP]{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 3.2848;2.9996;1.6661 -;-;- 195 NaN NaN 203691.4 NaN 18854 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23050 91.792 NaN 140330 35 0 10262 0.261 + 5401 FGVAFLFLFLN 11 46 644.3602182684886 1286.705883603777 2 644.3600463867188 MULTI HCD FTMS 0 0 0 23045 101607.8828125 0.37278331690188726 15 -0.40612030029296875 5 Unmodified _FGVAFLFLFLN_ REV__ENSG00000152254|ENST00000375363|G6PC2 3.2813086475875832 0.40452996145431686 1 DG 2 -1 12.078 0 0 0.9387 0 0 546.3224740352208 565.2859591119749 1111.6084331471957 0 0 0 0 0 0.2614393726401688 0 0 0 DG 0.9387 - 48 + NaN NaN 119177.6 NaN 18855 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23051 91.796 NaN 138030 35 0 7431.1 0.264 + 19293 NLVIFEVLLFF 11 72 451.9324500525328 1352.7755207577984 3 451.9327697753906 MULTI HCD FTMS 0 0 0 23045 60057.96484375 0.4193272246285417 5 -0.1376953125 6 Unmodified _NLVIFEVLLFF_ TMEM168|p.A209E|1|0.22|ENSG00000146802|chr7:112784200-112784200|G/T|missense_variant 1.3296431237094175 0.4130893034510334 1 {M(Oxidation (M))|F} 1 10 13.099 0 0 0.9683 0 0 1187.6964935134608 0 1187.6964935134608 0 -3.098943791441968 -3.098943791441968 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.9683 + + 8 + NaN NaN 101682.6 NaN 18856 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23052 91.799 NaN 211550 35 0 27026 0.261 + 20935 PLAPRRRR 8 70 511.3272908594855 1020.640028785771 2 511.3274230957031 MULTI HCD FTMS 0 0 0 23045 99236.1953125 0.8370352783272464 -2 0.0555877685546875 7 Unmodified _PLAPRRRR_ ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 8 12.764 0 0 1.2506 0 0 855.5609405062773 0 855.5609405062773 0 7.191015943446466 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2506 - 56 + NaN NaN 116176.3 NaN 18857 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23053 91.802 NaN 154550 35 0 15101 0.261 + 2260 DLLEMWDE 8 47 525.7260362228508 1049.4375195125015 2 525.7267456054688 MULTI HCD FTMS 0 0 0 23045 37440.2890625 0.50420106444571 5 -0.1376953125 8 Unmodified _DLLEMWDE_ ENSG00000106686|ENST00000682582|SPATA6L 4.75600775471527 0.5349361699807423 1 D{M(Oxidation (M))|F} 2 6 20.969 0 0 1.9981 0 0 0 784.3201441795866 784.3201441795866 3.0102999566398125 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 1.9981 - 36 + NaN NaN 111945.4 NaN 18858 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23054 91.806 NaN 94499 35 0 14594 0.261 + 20934 PLAKRTTR 8 40 471.79557667569196 NaN 0 471.79534912109375 PEAK HCD FTMS 0 0 0 23045 23753.884765625 0.8022722889016657 2 -0.0457305908203125 9 Unmodified _PLAKRTTR_ REV__ENST00000318887.7_1_3:88199040-88199157:+|nuORF 2.8892196856762586 0.38822285293237185 1 P 1 -1 5.4846 0 0 0.58249 0 0 636.3661950000184 205.13495813541252 841.5011531354309 0 0 0 0 0 0 0 0 0 P 0.58249 + + 3 + NaN NaN 103034.4 NaN 18859 4193 23045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23056 91.811 NaN 642830 35 0 26950 0.327 -1 0 101 641.8824831880886 1281.750413442977 2 641.8826904296875 MULTI HCD FTMS 0 0 0 23055 812112.1875 0.41650530063765356 16 -0.41913604736328125 1 NaN NaN 1 D 1 -1 10.362 0 0 0.80839 0 0 61.05124266959735 1102.6265657278102 1163.6778083974075 0 0 0 0 0 0.3494850021680094 0 0.28872548999643577 0 D 0.80839 - 265 + NaN NaN 180409.2 NaN 18860 4194 23055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23057 91.815 NaN 1195300 35 0 355050 0.263 + 2100 DFDVAVVTF 9 73 506.7529338445066 1011.4913147558132 2 506.75299072265625 MULTI HCD FTMS 0 0 0 23055 472572.96875 0.3415090209048032 3 -0.07198333740234375 2 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 88.95385435242217 0.004553379958619559 1 {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}D]|MM}DV + + 55.962 0.83236 0.1748 5.5326 5.5326 62.49 0 0 0 0 30.900253588913955 0 0 0 2.1237125054200234 0 0.5796896906561032 0 + + {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F} 5.5326 + + 395 + NaN NaN 259968 NaN 18861 4194 23055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23058 91.819 NaN 65700 35 0 4734.7 0.261 + 11982 KFVLQILYLSF 11 54 457.60801575073 1369.80221785239 3 457.60797119140625 MULTI HCD FTMS 0 0 0 23055 33894.328125 0.5513961552517701 8 -0.21959686279296875 3 Unmodified _KFVLQILYLSF_ REV__ENSG00000166881|ENST00000300128|NEMP1;REV__nc|ENSG00000166881|O14524-2|NEMP1 0.5059551277355931 0.4167017191902429 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 0.95627 0 0 1204.7229006910602 0 1204.7229006910602 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.95627 + + 11 + NaN NaN 107333.8 NaN 18862 4194 23055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23060 91.823 NaN 2311200 35 0 652830 0.327 + 19940 NYFTGVFAF 9 106 533.2555490984805 1064.496545263761 2 533.255859375 MULTI HCD FTMS 0 0 0 23059 1135841.875 0.5759399656187977 4 -0.1181488037109375 1 Unmodified _NYFTGVFAF_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 136.33342141710068 0.00022087650154924235 1 [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 9 0 + 90.389 0 0 8.4913 8.4913 96.333 0 0 0 21.852190335775745 67.45403695874927 21.852190335775745 32.875240784723374 0 2.548455006504028 1.3979400086720375 1.0044321917401078 1.1549471895720984 + + [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[{I|L}P]{[QS]|[NT]}NT{[MG]|[TS]}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}[YQ]{I|L}A{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}P]{[QS]|[NT]}NT{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[DP]{I|L}{[CP]|[EA]}R{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[DP]{I|L}{[CP]|[EA]}RA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.4913;5.4029;5.3964;5.3144;5.2149;4.6326;4.0215;3.775;3.4649;3.278 +;-;-;-;-;-;-;-;-;- + 2151 NaN NaN 430259.7 NaN 18863 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23061 91.828 NaN 1755300 35 0 512200 0.261 + 945 AYEIIDQFF 9 79 573.2791786536349 1144.5438043740696 2 573.2794799804688 MULTI HCD FTMS 0 0 0 23059 1088225.5 0.3821658254234581 4 -0.1181488037109375 2 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 83.42873516780209 0.004742894019233849 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 100.42 0 0 8.7735 8.7735 92.669 0 0 0 21.751736484954378 64.75054710168186 21.751736484954378 9.208187539523749 0 3.2302046884880937 1.6989700043360187 0.7302046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]A{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]A{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}A{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YA{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][DV]{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}A{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YA{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.7735;7.9689;6.8473;6.0427;5.7635;5.5512;5.1443;4.959;4.7467;4.4153 +;-;-;-;-;-;-;-;-;- + 1093 NaN NaN 345125.4 NaN 18864 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23062 91.831 NaN 547910 35 0 102900 0.261 + 27841 TDEFEDESF 9 75 559.711139627232 1117.407726321264 2 559.7112426757812 MULTI HCD FTMS 0 0 0 23059 206315.96875 0.6638479244694132 4 -0.1181488037109375 3 Unmodified _TDEFEDESF_ REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF 7.910154910731844 0.2910521888787154 1 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 -1 43.816 0 0 3.9212 0 0 164.95980026156184 0 164.95980026156184 0 31.877815196832636 0 0 0 0.4247425010840047 0 0.6203715150305281 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3.9212 - 520 + NaN NaN 170869.9 NaN 18865 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23063 91.835 NaN 211860 35 0 37987 0.262 + 886 AYAIITALL 9 39 474.7918576257879 947.5691623183758 2 474.79180908203125 MULTI HCD FTMS 0 0 0 23059 195169.765625 0.30975197850604047 4 -0.1181488037109375 4 Unmodified _AYAIITALL_ ENSG00000181804|ENST00000316549|SLC9A9 50.855029805455786 0.030374663808198754 1 AT{I|L}CA{I|L}{I|L} 7 4 60.961 0 0 6.4335 0 0 244.17842299629064 0 244.17842299629064 0 59.99236983833846 0 0 0 0.9247425010840047 0 0.4247425010840047 0 AT{I|L}CA{I|L}{I|L} 6.4335 - 81 NaN NaN 112150.1 NaN 18866 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23064 91.838 NaN 530160 35 0 75765 0.261 + -1 IEVYCFLI 8 59 528.7748397343565 1055.535126535513 2 528.7847290039062 MULTI HCD FTMS 0 0 0 23059 169713.0625 0.08975194448129835 22 -0.5965194702148438 5 Carbamidomethyl (C) _IEVYC(Carbamidomethyl (C))FLI_ REV__ENSG00000173578|ENST00000309285|XCR1 18.13498045792455 0.4603629008820478 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 33.94 0 0 3.2154 0 0 664.2899350922482 0 664.2899350922482 0 -4.1072813928388285 -4.1072813928388285 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.2154 + + 163 NaN NaN 171442.8 NaN 18867 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23065 91.841 NaN 801420 35 0 76452 0.261 + 6063 FPEALIPVQL 10 94 563.8288636682056 1125.643174403211 2 563.828857421875 MULTI HCD FTMS 0 0 0 23059 111065.2734375 0.6242805429840409 -5 0.12744903564453125 6 Unmodified _FPEALIPVQL_ ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.2654086933305545 1 YAC(Carbamidomethyl (C)){I|L}[VP]Q{I|L} 8 4 28.886 0 0 2.5662 0 0 163.16638104559235 0 163.16638104559235 0 4.933662338707528 0 0 0 1.5356668758921828 0 0 0.7638793319624578 YAC(Carbamidomethyl (C)){I|L}[VP]Q{I|L} 2.5662 - 953 + NaN NaN 209219.5 NaN 18868 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23066 91.845 NaN 592070 35 0 59872 0.261 + 16681 LWSFCLAIF 9 85 578.7966150959753 1155.5786772587505 2 578.79736328125 MULTI HCD FTMS 0 0 0 23059 127121.8984375 0.5836551549787157 4 -0.1181488037109375 7 Carbamidomethyl (C) _LWSFC(Carbamidomethyl (C))LAIF_ ENSG00000119915|ENST00000370005|ELOVL3 44.40701690623563 0.04511410083598184 1 M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NG]A{I|L}{M(Oxidation (M))|F} 10 5 + 42.612 0 0 3.6875 3.6875 80.59 0 0 0 5.72559982972642 6.990925311194182 5.72559982972642 2.23320034371433 0 1.1989700043360187 0 0 0.4247425010840047 M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NG]A{I|L}{M(Oxidation (M))|F};M{I|L}D{I|L}[RH][QP]{M(Oxidation (M))|F};M{I|L}D{I|L}[RH]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};M{I|L}D{I|L}[RH]C(Carbamidomethyl (C))[{I|L}V];M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}QN;[YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};M{I|L}D{I|L}[RH][CG][{I|L}V];[YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]{I|L}[RH]{[HG]|PP}{I|L}{M(Oxidation (M))|F} 3.6875;3.4943;3.0826;2.3954;2.2164;1.7182;1.5986;1.4577;1.4367;1.1762 -;-;-;-;-;-;-;-;-;- 464 + NaN NaN 167025.5 NaN 18869 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23067 91.848 NaN 195130 35 0 33934 0.263 + 3200 EDDPAGHH 8 56 439.17610284964616 876.3376527660923 2 439.1763916015625 MULTI HCD FTMS 0 0 0 23059 83741.2890625 1 0 0 8 Unmodified _EDDPAGHH_ EFS|p.E544Tfs*14|1|0.19|ENSG00000100842|chr14:23357281-23357282|TC/-|frameshift_variant;ENSG00000100842|ENST00000216733|EFS;nc|ENSG00000100842|O43281-2|EFS;nc|ENSG00000100842|O43281-3|EFS 5.760428011301431 0.5334459684533844 1 T 1 8 10.242 0 0 1.1688 0 0 278.15033599216844 494.1044739749 772.2548099670685 0 0 0 0 0 0.3252574989159953 0 0 0 T 1.1688 - 14 + NaN NaN 109338.9 NaN 18870 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23068 91.851 NaN 264660 35 0 18078 0.261 + 13747 KYPSPFFVF 9 59 566.2979461042614 1130.5813392753228 2 566.2972412109375 MULTI HCD FTMS 0 0 0 23059 52077.99609375 0.45009597479780405 7 -0.20668792724609375 9 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 1 {M(Oxidation (M))|F}WSW 4 8 35.745 0 0 3.1617 0 0 506.31054738279914 0 506.31054738279914 0 -8.20977063365467 -8.20977063365467 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}WSW 3.1617 - 1180 + NaN NaN 115644 NaN 18871 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23069 91.855 NaN 238860 35 0 75963 0.262 + 10039 IFDLSEVL 8 47 468.2577284160257 934.5009038988514 2 468.25787353515625 MULTI HCD FTMS 0 0 0 23059 118883.7890625 0.22194223662730614 -6 0.16025543212890625 10 Unmodified _IFDLSEVL_ ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant 50.855029805455786 0.12247309515496523 1 {I|L}SEV{I|L} 5 3 61.938 0 0 6.6279 0 0 375.1796131818375 0 375.1796131818375 0 50.96910013008056 0 0 0 1.4247425010840047 0 1.274227503252014 0 + {I|L}SEV{I|L} 6.6279 + + 29 NaN NaN 109275.5 NaN 18872 4195 23059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23071 91.86 NaN 1310900 35 0 102500 0.327 + 35733 YYLNFISAI 9 95 552.2923169791757 1102.5700810251512 2 552.7844848632812 MULTI HCD FTMS 0 0 0 23070 90616.9609375 0.23538447295500933 5 -0.14101409912109375 1 Unmodified _YYLNFISAI_ ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 65.23502041540118 0.010630085227462206 1 YYAS{M(Oxidation (M))|F}{I|L}EV 8 5 50.276 0 0 4.5599 0 0 0 127.0853601756984 127.0853601756984 6.3635328958429085 0 0 0 0 0 1.3010299956639813 1.2931576817365436 0 YYAS{M(Oxidation (M))|F}{I|L}EV 4.5599 - 1121 NaN NaN 277074.7 NaN 18873 4196 23070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23072 91.864 NaN 300790 35 0 15251 0.263 -1 0 76 422.58167378528765 1264.723191956063 3 422.5819091796875 MULTI HCD FTMS 0 0 0 23070 173073.765625 0.40131479647280444 19 -0.5078887939453125 2 NaN NaN 1 Q 1 -1 8.9794 0 0 0.70999 0 0 634.376220375788 499.27720056705317 1133.6534209428412 0 0 0 0 0 0.5 0 0 0 Q 0.70999 - 25 + NaN NaN 128624 NaN 18874 4196 23070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23073 91.868 NaN 896000 35 0 119390 0.261 + 32754 WREPVPFII 9 84 578.8290519651732 1155.6435509971463 2 578.8291015625 MULTI HCD FTMS 0 0 0 23070 169413.75 0.5376634365973014 -4 0.10809326171875 3 Unmodified _WREPVPFII_ REV__ENST00000396634.5_1_6:29913412-29913463:+|nuORF 25.399314129420986 0.14091189997036632 1 [WR]P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L} 9 -1 + 48.623 0 0 4.2075 4.2075 83.543 0 0 0 2.9175644623200014 29.237796609374058 2.9175644623200014 7.759621790487685 0 1.372363747448347 1 0 0.3807196863200844 [WR]P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L};[YN]{I|L}R{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L}{I|L} 4.2075;3.536 -;- 690 NaN NaN 220320 NaN 18875 4196 23070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23074 91.871 NaN 204820 35 0 13303 0.261 + -1 TAISDCLVSL 10 55 539.7756143327725 1077.536675732345 2 539.7769165039062 MULTI HCD FTMS 0 0 0 23070 68640.1640625 0.42235028697034366 18 -0.47838592529296875 4 Carbamidomethyl (C) _TAISDC(Carbamidomethyl (C))LVSL_ REV__ENST00000304685.8_1_1:183605494-183711265:+|nuORF 17.11289562659939 0.35104376501799556 1 [TA]{I|L} 3 -1 28.71 0 0 2.6644 0 0 0 789.3446075872675 789.3446075872675 3.252574989159953 0 0 0 0 0.6747425010840047 1.3010299956639813 0 0 [TA]{I|L} 2.6644 + + 183 + NaN NaN 116462.1 NaN 18876 4196 23070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23075 91.874 NaN 69743 35 0 6428.5 0.261 + 27987 TFITVSALF 9 42 499.7815080364851 997.5484631397702 2 499.7810974121094 MULTI HCD FTMS 0 0 0 23070 30271 0.7252786417347891 1 -0.02291107177734375 5 Unmodified _TFITVSALF_ ENSG00000070476|ENST00000389709|ZXDC;ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB;nc|ENSG00000070476|Q2QGD7-2|ZXDC;nc|ENSG00000070476|Q2QGD7-3|ZXDC 21.74664581756881 0.17247014374749275 1 S[{I|L}A]{M(Oxidation (M))|F} 4 5 29.693 0 0 2.9766 0 0 561.3162743280645 0 561.3162743280645 0 28.098943791441968 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + S[{I|L}A]{M(Oxidation (M))|F} 2.9766 + + 6 NaN NaN 87512.7 NaN 18877 4196 23070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23076 91.878 NaN 80336 35 0 16721 0.261 -1 0 40 471.3539664940743 NaN 0 471.3538818359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 1 P 1 -1 5.4846 0 0 0.58303 0 0 635.4830051543612 205.13497339420158 840.6179785485627 0 0 0 0 0 0 0 0 0 P 0.58303 - 5 + NaN NaN 102016.9 NaN 18878 4196 23070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23078 91.883 NaN 1799900 35 0 274000 0.327 + 15827 LPIFPDLQV 9 81 521.3024350943118 1040.5903172554235 2 521.3026123046875 MULTI HCD FTMS 0 0 0 23077 907411.5 0.0857799791271993 9 -0.24582672119140625 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 107.99703571036002 0.003269392969029945 1 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV 9 0 + 73.299 0 0 7.044 7.044 86.108 0 0 0 16.267186419914097 41.35274404843592 16.267186419914097 2.4865124202832334 0 1.6989700043360187 1.3010299956639813 0.4247425010840047 0 + + [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}[AG]V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQ{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PDQ{I|L}V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD[AG]{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD[AG]{I|L}V;{NN|[MP]|[D{I|L}]|[EV]}{[QV]|[N{I|L}]|[RA]|[KV]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}P[TP]{[SA]|[TG]}V 7.044;6.805;6.159;5.9201;5.8236;5.5847;4.9387;4.6998;3.2607;3.2307 +;-;-;-;-;-;-;-;-;- + 1154 NaN NaN 368082.9 NaN 18879 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23079 91.887 NaN 1292300 35 0 365630 0.263 + 35209 YVLKGGGM 8 75 412.720539513622 823.426526094044 2 412.7206726074219 MULTI HCD FTMS 0 0 0 23077 709401.75 0.5273416571191227 2 -0.05907440185546875 2 Unmodified _YVLKGGGM_ ENSG00000163840|ENST00000296161|DTX3L 14.581692164780916 0.48650662947107914 1 [YV]WP{I|L}{M(Oxidation (M))|F} 6 5 + 61.604 0 0 7.4814 7.4814 89.426 0 0 0 3.1947654920421087 3.1947654920421087 3.1947654920421087 8.239087409443187 0 1.6989700043360187 1.3979400086720375 0 0 [YV]WP{I|L}{M(Oxidation (M))|F};[YV]W{I|L}P{M(Oxidation (M))|F};[YV]{I|L}WP{M(Oxidation (M))|F} 7.4814;6.4808;6.4808 -;-;- 89 NaN NaN 285259.2 NaN 18880 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23080 91.891 NaN 782100 35 0 87757 0.261 -1 0 98 502.81427609535257 1003.6139992575052 2 502.8143005371094 MULTI HCD FTMS 0 0 0 23077 536607.1875 0.7357237980958123 3 -0.09520721435546875 3 NaN NaN 1 A 1 -1 8.5177 0 0 0.8487 0 0 237.15698310166903 692.4077996696219 929.564782771291 0 0 0 0 0 0.5418727718234408 0 0 0 A 0.8487 - 40 + NaN NaN 216874 NaN 18881 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23081 91.894 NaN 586950 35 0 55751 0.261 + 6939 FPVNQLFDML 10 64 620.3076264800765 1238.6007000269528 2 620.3080444335938 MULTI HCD FTMS 0 0 0 23077 331370.9375 0.785024271717081 1 -0.03289031982421875 4 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 125.52916310638031 2.8570307479996667E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 10 0 + 88.771 0 0 7.167 7.167 89.408 0 0 0 4.259687322722812 70.442970977369 4.259687322722812 9.164539485499262 0 2.6989700043360187 0 0 1.4436726795685342 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VN[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGGQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[DS]|[MA]|[CV]|TT}[RV]Q{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGG[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[DS]|[MA]|[CV]|TT}[RV][AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QN[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[Y{M(Oxidation (M))|F}][DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QYY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[YE]{[ET]|[MV]}{I|L} 7.167;6.4271;6.194;4.6321;4.5245;3.8922;2.6884;2.5818;2.4648;2.3995 +;-;-;-;-;-;-;-;-;- + 463 NaN NaN 174615 NaN 18882 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23082 91.897 NaN 290770 35 0 86606 0.264 -1 0 45 405.11878050200676 808.2230080708135 2 405.1189880371094 MULTI HCD FTMS 0 0 0 23077 113576.15625 0.368417558084678 9 -0.24582672119140625 5 NaN NaN 1 {I|L}T 2 -1 5.5732 0 0 0.68956 0 0 207.85687145147602 383.2075594537719 591.064430905248 0 0 0 0 0 0 0 0 0 {I|L}T 0.68956 - 11 + NaN NaN 129413.6 NaN 18883 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23083 91.901 NaN 442920 35 0 83398 0.261 -1 MPPWENIWL 9 56 601.2899906088854 1200.5654282845708 2 601.2892456054688 MULTI HCD FTMS 0 0 0 23077 110875.9296875 0.39769813955500777 2 -0.05907440185546875 6 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.13340543277302316 1 N{I|L}W{I|L} 4 -1 39.781 0 0 3.3136 0 0 656.2645130841812 0 656.2645130841812 0 29.323806533759438 0 0 0 1.2614393726401687 0 0 0 N{I|L}W{I|L} 3.3136 + + 81 NaN NaN 153476.9 NaN 18884 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23084 91.904 NaN 856330 35 0 91973 0.261 + -1 LMHSMIHLE 9 97 563.773722923147 1125.532892913094 2 563.7752685546875 MULTI HCD FTMS 0 0 0 23077 77074.15625 0.508889308657929 1 -0.03289031982421875 7 Oxidation (M) _LMHSM(Oxidation (M))IHLE_ REV__ENSG00000169340|ENST00000302451|PDILT 23.1484247019978 0.1603590852062899 1 YYA[HA]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 9 -1 + 52.72 0 0 4.684 4.684 81.807 0 0 0 30.18815558569042 1.2509049279787874 1.2509049279787874 2.096667707322105 0 1.0021934810768762 2 0.48965182871044377 0 YYA[HA]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};YYE{[QS]|[NT]}[VP]Q{I|L};YYAS{[DA]|[EG]}[VP]Q{I|L};YYA[HA]K{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};YYE{[QS]|[NT]}[QP]V{I|L};YYAS{M(Oxidation (M))|F}[YT]V{I|L};YYAS{[DA]|[EG]}[QP]V{I|L};YYA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};YYASDP[QA]V{I|L};YY{[WS]|[C(Carbamidomethyl (C)){I|L}]}PWPK 4.684;4.4977;4.4462;4.249;4.1551;4.1193;4.1035;4.0309;2.741;2.7172 -;-;-;-;-;-;-;-;-;- 1049 + NaN NaN 231170 NaN 18885 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23085 91.907 NaN 161570 35 0 39723 0.261 + 6888 FPVEDVFTLP 10 44 582.3028416511975 1162.5911303691948 2 582.303466796875 MULTI HCD FTMS 0 0 0 23077 50089.01953125 0.368055426391033 -9 0.23876953125 8 Unmodified _FPVEDVFTLP_ ENSG00000081692|ENST00000620518|JMJD4;ENST00000480590.1_1_1:227921003-227922761:-|nuORF;ENST00000485807.1_1_1:227921606-227921849:-|nuORF;nc|ENSG00000081692|Q9H9V9-1|JMJD4;nc|ENSG00000081692|Q9H9V9-2|JMJD4 13.90604991867851 0.3810395177745597 1 {I|L}P 2 8 25.969 0 0 2.2337 0 0 934.4425526349625 0 934.4425526349625 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}P 2.2337 + + 4 NaN NaN 106288.6 NaN 18886 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23086 91.911 NaN 129640 35 0 14894 0.261 + 11268 IYLPYLQNW 9 47 605.3185649124005 1208.6225768916008 2 605.3186645507812 MULTI HCD FTMS 0 0 0 23077 18495.369140625 0.027305962056432303 18 -0.48497772216796875 9 Unmodified _IYLPYLQNW_ ENSG00000151116|ENST00000396197|UEVLD;ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD 30.224811164608877 0.11021837014094292 1 [Y{I|L}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{[WN]|[YH]} 9 0 + 38.362 0 0 3.1741 3.1741 84.681 0 0 0 17.550274515365064 31.37272471682025 17.550274515365064 9.208187539523756 0 1 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{[WN]|[YH]};[Y{I|L}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]{[WN]|[YH]} 3.1741;2.4122 +;- + 108 NaN NaN 101697.8 NaN 18887 4197 23077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23088 91.915 NaN 890560 35 0 33415 0.327 -1 0 94 633.3692585006554 1264.7239640681107 2 633.3695068359375 MULTI HCD FTMS 0 0 0 23087 1357054 0.425887867904067 25 -0.6516342163085938 1 NaN NaN 1 {[HG]|PP}N 3 -1 11.171 0 0 0.88327 0 0 0 953.5181420786339 953.5181420786339 0.6863623584101237 0 0 0 0 0.6989700043360187 0 0 0 {[HG]|PP}N 0.88327 - 197 + NaN NaN 229137.8 NaN 18888 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23089 91.92 NaN 1329400 35 0 277990 0.261 + 28934 TWYPVSIPAF 10 78 590.8052199146704 1179.5958868961407 2 590.8055419921875 MULTI HCD FTMS 0 0 0 23087 531111 0.3488255131909435 -3 0.0919647216796875 2 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 114.6490535036381 4.5448240269034285E-05 1 {[WT]|[RM]}YPVS{I|L}PA{M(Oxidation (M))|F} 10 0 + 96.151 0 0 8.1512 8.1512 95.213 0 0 0 5.563025007672877 73.25868060385696 5.563025007672877 24.82084047819552 0 3.5356668758921828 0 1.110924374808178 0 + + {[WT]|[RM]}YPVS{I|L}PA{M(Oxidation (M))|F};[HV]P{I|L}S{[CP]|[EA]}{I|L}PA{M(Oxidation (M))|F};[HV]PDVVS{I|L}PA{M(Oxidation (M))|F};[HV][DV]PVS{I|L}PA{M(Oxidation (M))|F};[HV]P{I|L}{[CP]|[EA]}S{I|L}PA{M(Oxidation (M))|F};{[WT]|[RM]}YPVS{I|L}[DV]T;{[WT]|[RM]}YPVS{I|L}E[VS];{[WT]|[RM]}YPV[TP]VA{M(Oxidation (M))|F};[HV]V[TP]{[CP]|[EA]}{I|L}PA{M(Oxidation (M))|F};{[WT]|[RM]}YPPS{I|L}VA{M(Oxidation (M))|F} 8.1512;6.047;5.856;5.7922;5.788;5.6657;5.5598;4.9526;4.285;4.0788 +;-;-;-;-;-;-;-;-;- + 846 NaN NaN 287536.4 NaN 18889 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23090 91.923 NaN 462810 35 0 58471 0.261 -1 FLDRDYCV 8 73 544.2469281117125 1086.4793032902248 2 544.2471313476562 MULTI HCD FTMS 0 0 0 23087 63112.0078125 0.11854726519140814 7 -0.186798095703125 3 Carbamidomethyl (C) _FLDRDYC(Carbamidomethyl (C))V_ ENSG00000036549|ENST00000370801|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3 24.67388899826682 0.4122521268485776 1 NY{M(Oxidation (M))|F}TR 5 -1 70.246 0 0 6.4655 0 0 0 402.1430589001212 402.1430589001212 33.56357153230407 0 0 0 0 1.1307196863200843 2 0.5891368308784531 0.2614393726401688 NY{M(Oxidation (M))|F}TR 6.4655 - 422 + NaN NaN 168631.8 NaN 18890 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23091 91.927 NaN 402840 35 0 91124 0.261 -1 0 68 480.2809322442964 958.5473115553929 2 480.2808532714844 MULTI HCD FTMS 0 0 0 23087 256783.640625 0.5584566934356837 -2 0.0558013916015625 4 NaN NaN 1 {I|L}KT[NS]{[QN]|[E{I|L}]|[KN]} 7 -1 28.605 0 0 2.9842 0 0 155.09485885817315 0 155.09485885817315 0 7.943386833384647 0 0 0 0.5 0 0.28872548999643577 0.9247425010840047 {I|L}KT[NS]{[QN]|[E{I|L}]|[KN]} 2.9842 - 116 + NaN NaN 150453.7 NaN 18891 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23092 91.93 NaN 144250 35 0 24260 0.261 + -1 VAASCAIF 8 58 419.7101874571151 837.4058219810303 2 419.710205078125 MULTI HCD FTMS 0 0 0 23087 58416.6484375 0.33871369147243924 5 -0.130950927734375 5 Carbamidomethyl (C) _VAASC(Carbamidomethyl (C))AIF_ REV__ENSG00000102934|ENST00000219207|PLLP 5.230669730166228 0.5342319408533849 1 P{I|L}{M(Oxidation (M))|F} 3 -1 31.427 0 0 3.7529 0 0 462.1894703595719 0 462.1894703595719 0 28.327731244245342 0 0 0 1 0 0 0 P{I|L}{M(Oxidation (M))|F} 3.7529 - 15 NaN NaN 114090.5 NaN 18892 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23093 91.933 NaN 609400 35 0 104740 0.261 + 20148 NYIVTDLAVF 10 72 577.8084602973497 1153.6023676614993 2 578.2915649414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NYIVTDLAVF_ ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant 21.536976647645854 0.3096624038397699 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E 8 6 50.443 0 0 4.3727 0 0 0 127.1047100594409 127.1047100594409 10.811609754111792 0 0 0 0 0 1.3979400086720375 0 0.6109243748081782 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E 4.3727 - 402 NaN NaN 177484.9 NaN 18893 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23094 91.937 NaN 323480 35 0 56741 0.261 + 14683 LGYLSHMSSSI 11 60 597.7953129018878 1193.5760728705754 2 597.7955322265625 MULTI HCD FTMS 0 0 0 23087 98304.9140625 0.35298184393273213 -6 0.1638946533203125 7 Unmodified _LGYLSHMSSSI_ REV__ENSG00000141232|ENST00000499247|TOB1 22.736283301280096 0.2589804299186601 1 S{I|L}[PA]{M(Oxidation (M))|F} 5 -1 41.07 0 0 3.4409 0 0 660.2892167389472 0 660.2892167389472 0 28.622731327798547 0 0 0 1.4247425010840047 0 0.7614393726401688 0 S{I|L}[PA]{M(Oxidation (M))|F} 3.4409 - 49 NaN NaN 131502.6 NaN 18894 4198 23087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23096 91.942 NaN 722290 35 0 66053 0.327 + 28441 TPKKGRSIT 9 73 494.300842902745 986.58713287229 2 494.30096435546875 MULTI HCD FTMS 0 0 0 23095 591714.5625 0.46024683697467683 5 -0.1343994140625 1 Unmodified _TPKKGRSIT_ REV__ENSG00000100426|ENST00000216268|ZBED4 6.2057823575117 0.30397260197431997 1 C(Carbamidomethyl (C)) 1 -1 3.3412 0 0 0.33866 0 0 396.2367117633326 427.3042086236938 823.5409203870264 0 0 0 0 0 0.3252574989159953 0 0 0 C(Carbamidomethyl (C)) 0.33866 - 7 + NaN NaN 192578.1 NaN 18895 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23097 91.946 NaN 1556400 35 0 174640 0.261 + 6991 FPWDIDEAL 9 106 553.2635587796477 1104.5125646260954 2 553.263916015625 MULTI HCD FTMS 0 0 0 23095 508624.28125 0.8414355481482654 -1 0.02618408203125 2 Unmodified _FPWDIDEAL_ ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1;nc|ENSG00000186625|O75449-2|KATNA1 97.07464715276575 0.004340583992084827 1 YYAS{M(Oxidation (M))|F}{I|L}EVN 9 8 + 54.179 0 0 4.9052 4.9052 84.308 0 0 0 1.6005193830564934 20.981610638605105 1.6005193830564934 6.9466033937931115 0 0 1 1.2786596949921218 0 YYAS{M(Oxidation (M))|F}{I|L}EVN;{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]}{[QG]|[NA]}{I|L}EVN;[KC]E{I|L}{[QG]|[NA]}DEA{I|L};YYAS{M(Oxidation (M))|F}AAEA{I|L};YYAS{M(Oxidation (M))|F}{I|L}[DN]{I|L};{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))K]D{I|L}EVN;[KC]E{I|L}{[QG]|[NA]}DAE{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[TA]DEA{I|L};{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))K]AADEA{I|L};YYASE{I|L}{M(Oxidation (M))|F}VN 4.9052;4.2763;4.266;4.0153;3.867;3.8356;3.8173;3.5869;3.563;3.5396 -;-;-;-;-;-;-;-;-;- 1890 NaN NaN 333186.9 NaN 18896 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23098 91.95 NaN 971930 35 0 259410 0.261 + 6489 FPIPGEPGFPL 11 66 585.8135101996211 1169.612467466042 2 585.8134765625 MULTI HCD FTMS 0 0 0 23095 435787.65625 0.7156783026874929 -5 0.1310577392578125 3 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 41.8396318013385 0.12510225336016262 1 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L} 10 6 + 50.864 0 0 4.3488 4.3488 83.686 0 0 0 5.919693766594705 24.660677999045717 5.919693766594705 7.486512420283233 0 1.4247425010840047 1.3010299956639813 0.7742275032520141 0 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L};[{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[WP][TA]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}E[TA][WP]P{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA]E[WP]P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA]E[WP]P{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA][WP]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[WP][TA]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WP][TA]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA][WP]EP{I|L} 4.3488;3.7087;3.7087;3.1054;3.0858;2.979;2.4458;2.4458;2.3389;2.3389 -;-;-;-;-;-;-;-;-;- 1394 NaN NaN 232677.5 NaN 18897 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23099 91.953 NaN 155930 35 0 33244 0.261 + 19947 NYGDIELLF 9 36 542.2716117787007 1082.5286706242014 2 542.271728515625 MULTI HCD FTMS 0 0 0 23095 98690.96875 0.10566400028907691 9 -0.24224090576171875 4 Unmodified _NYGDIELLF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 27.628801355627647 0.12213550946336599 1 E{I|L}{I|L}{M(Oxidation (M))|F} 4 5 45.477 0 0 4.201 0 0 562.2380955283014 0 562.2380955283014 0 41.49797211252192 0 0 0 1.805462187404089 0 0 0 + E{I|L}{I|L}{M(Oxidation (M))|F} 4.201 + + 22 + NaN NaN 102606.9 NaN 18898 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23100 91.956 NaN 132380 35 0 7164.7 0.262 + 14992 LLLFFVEFVLN 11 59 451.9324500525328 1352.7755207577984 3 451.93243408203125 MULTI HCD FTMS 0 0 0 23095 78617.9296875 0.5489136761072236 11 -0.28807830810546875 5 Unmodified _LLLFFVEFVLN_ REV__ENST00000595222.5_1_19:56880178-56884554:+|nuORF 1.214830529360525 0.41359283248740725 1 {[WT]|[RM]}{[QN]|[E{I|L}]|[KN]}{I|L}{I|L} 6 -1 6.6555 0 0 0.49199 0 0 0 594.3279248928171 594.3279248928171 3.556518697048718 0 0 0 0 0 0 0 0 {[WT]|[RM]}{[QN]|[E{I|L}]|[KN]}{I|L}{I|L} 0.49199 - 31 NaN NaN 93571.5 NaN 18899 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23101 91.96 NaN 108450 35 0 30132 0.261 + 3599 EKKQRGKGCVL 11 42 623.3581720068669 1244.7017910805337 2 623.3580932617188 MULTI HCD FTMS 0 0 0 23095 75212.4921875 1 0 0 6 Unmodified _EKKQRGKGCVL_ ENSG00000188559|ENST00000202677|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 4.897010918128616 0.3974440401582579 1 NV{I|L} 3 9 23.188 0 0 1.8629 0 0 900.4933338849625 0 900.4933338849625 0 16.197887582883936 0 0 0 0 0 0 0 NV{I|L} 1.8629 - 5 NaN NaN 111457.3 NaN 18900 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23102 91.963 NaN 105060 35 0 5103.5 0.261 + -1 LMKLWNEKPL 10 53 644.3602182684886 1286.705883603777 2 644.3604736328125 MULTI HCD FTMS 0 0 0 23095 91159.390625 0.3344494448984 21 -0.563568115234375 7 Oxidation (M) _LM(Oxidation (M))KLWNEKPL_ REV__ENSG00000114346|ENST00000392692|ECT2;REV__nc|ENSG00000114346|Q9H8V3-2|ECT2;REV__nc|ENSG00000114346|Q9H8V3-3|ECT2;REV__nc|ENSG00000114346|Q9H8V3-4|ECT2 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 98518.1 NaN 18901 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23103 91.966 NaN 131490 35 0 19835 0.263 + -1 LLIKMKLF 8 52 511.3272908594855 1020.640028785771 2 511.3271179199219 MULTI HCD FTMS 0 0 0 23095 53221.69140625 0.4489131524943286 4 -0.104766845703125 8 Oxidation (M) _LLIKM(Oxidation (M))KLF_ REV__ENSG00000120498|ENST00000374333|TEX11;REV__nc|ENSG00000120498|Q8IYF3|TEX11;REV__TEX11|p.D528Lfs*5|1|0.13|ENSG00000120498|chrX:70629682-70629683|-/AG|frameshift_variant;REV__TEX11|p.E527Vfs*12|1|0.13|ENSG00000120498|chrX:70629684-70629685|-/AGACACAGAAGAGACCTTTA|frameshift_variant 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3697 0 0 855.5609710238555 0 855.5609710238555 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3697 + + 26 + NaN NaN 102207.5 NaN 18902 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23104 91.97 NaN 163840 35 0 27615 0.261 + 34765 YQGQFLDV 8 54 485.2366675731538 NaN 0 485.2225036621094 PEAK HCD FTMS 0 0 0 23095 26561.326171875 1 0 0 9 Unmodified _YQGQFLDV_ REV__ENSG00000172046|ENST00000417901|USP19;REV__nc|ENSG00000172046|O94966-3|USP19;REV__nc|ENSG00000172046|O94966-4|USP19;REV__nc|ENSG00000172046|O94966-5|USP19;REV__nc|ENSG00000172046|O94966-7|USP19;REV__nc|ENSG00000172046|O94966|USP19 2.0597508629832335 0.38822285293237185 1 VD{I|L}S 4 -1 10.711 0 0 1.1059 0 0 129.97710604298885 421.2573641412719 551.2344701842608 0 0 0 0 0 0 0 0 0 VD{I|L}S 1.1059 - 18 + NaN NaN 118995.5 NaN 18903 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23105 91.973 NaN 147780 35 0 24069 0.261 + 5687 FPAGFVLQL 9 46 496.2840995181085 990.5536461030171 2 497.286376953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _FPAGFVLQL_ ENSG00000168005|ENST00000294244|SPINDOC 23.1484247019978 0.1603590852062899 1 Q{I|L}V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Q{I|L} 7 6 28.275 0 0 2.8544 0 0 130.09189990492467 0 130.09189990492467 0 12.790003832308443 0 0 0 0.6989700043360187 0 0.3252574989159953 0.3807196863200844 Q{I|L}V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Q{I|L} 2.8544 - 41 + NaN NaN 105845.3 NaN 18904 4199 23095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23107 91.978 NaN 527750 35 0 23809 0.327 -1 0 99 641.8824831880886 1281.750413442977 2 641.8824462890625 MULTI HCD FTMS 0 0 0 23106 609441.75 0.3125623814196086 22 -0.5631256103515625 1 NaN NaN 1 D 1 -1 10.841 0 0 0.84581 0 0 105.08081514241833 1058.5922717016522 1163.6730868440704 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 D 0.84581 - 158 + NaN NaN 170233 NaN 18905 4200 23106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23108 91.982 NaN 761100 35 0 188840 0.262 + 19941 NYFTGVFAF 9 68 533.2555490984805 1064.496545263761 2 533.2555541992188 MULTI HCD FTMS 0 0 0 23106 257594.875 0.13061605379805044 9 -0.2223358154296875 2 Unmodified _NYFTGVFAF_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 85.27202061508552 0.004649858145912257 1 NP{[NV]|[RG]}[SG]{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 10 5 + 56.009 0 0 5.2615 5.2615 82.361 0 0 0 35.83159042249612 11.420365321768529 11.420365321768529 1.2371250542002343 0 1.805462187404089 0 0.3054621874040891 0.3807196863200844 NP{[NV]|[RG]}[SG]{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};NP{[NV]|[RG]}[SG]{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};NP{[NV]|[RG]}[SG]A{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};NP{[NV]|[RG]}{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YN][SG]{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YN][SG]{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};N[QA]YY{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};N[QA]{I|L}YY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}PE{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]{[MG]|[TS]}[SG]{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2615;5.1453;4.3928;4.2274;4.0248;3.9086;3.8707;3.8707;3.8339;3.5865 -;-;-;-;-;-;-;-;-;- 730 + NaN NaN 198564.4 NaN 18906 4200 23106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23109 91.986 NaN 436640 35 0 104020 0.261 + 946 AYEIIDQFF 9 60 573.2791786536349 1144.5438043740696 2 573.2791137695312 MULTI HCD FTMS 0 0 0 23106 170569.796875 0.059901139253809035 9 -0.2223358154296875 3 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 38.61474834105838 0.07170385841135779 1 C(Carbamidomethyl (C)){I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 3 63.946 0 0 5.587 0 0 203.10546316488836 0 203.10546316488836 0 41.092669962084685 0 0 0 2.5994850021680094 0 0 0 C(Carbamidomethyl (C)){I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.587 - 329 + NaN NaN 160965.4 NaN 18907 4200 23106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23110 91.989 NaN 431250 35 0 68827 0.261 + 2101 DFDVAVVTF 9 58 506.7529338445066 1011.4913147558132 2 506.7526550292969 MULTI HCD FTMS 0 0 0 23106 90866.59375 0.06566554482919101 9 -0.2223358154296875 4 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 24.020572477871973 0.15282392193088168 1 VS{I|L}{M(Oxidation (M))|F} 4 7 39.483 0 0 3.9034 0 0 547.231196202882 0 547.231196202882 0 26.29493455131808 0 0 0 1.2059771852360797 0 0 0 VS{I|L}{M(Oxidation (M))|F} 3.9034 - 175 + NaN NaN 149896.5 NaN 18908 4200 23106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23111 91.992 NaN 175640 35 0 37673 0.261 + -1 EFCLPLDAE 9 39 547.2476872450458 1092.4808215568914 2 547.24853515625 MULTI HCD FTMS 0 0 0 23106 74259.0390625 0.758912766234856 1 -0.02289581298828125 5 Carbamidomethyl (C) _EFC(Carbamidomethyl (C))LPLDAE_ REV__ENSG00000023839|ENST00000647814|ABCC2 3.944395688203298 0.32111559684428237 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5551 0 0 927.401809571343 0 927.401809571343 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5551 + + 10 + NaN NaN 109280.1 NaN 18909 4200 23106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23112 91.996 NaN 308190 35 0 63577 0.261 -1 KPCHERAPAF 10 54 606.800351270767 1211.586149608334 2 606.8013305664062 MULTI HCD FTMS 0 0 0 23106 138073.265625 0.8213988961058819 -4 0.1181182861328125 6 Carbamidomethyl (C) _KPC(Carbamidomethyl (C))HERAPAF_ ENST00000298097.7_1_14:39870652-39870706:-|nuORF 17.11289562659939 0.35104376501799556 1 S{I|L}PA{M(Oxidation (M))|F} 5 -1 50.662 0 0 4.1814 0 0 678.3012310238624 0 678.3012310238624 0 41.70941280735775 0 0 0 1.5 0 0.8494850021680094 0 S{I|L}PA{M(Oxidation (M))|F} 4.1814 - 255 NaN NaN 126083.2 NaN 18910 4200 23106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23114 92.001 NaN 768130 35 0 149200 0.327 + 20779 PGSCAFPF 8 68 413.1830786653911 824.3516043975823 2 413.1836242675781 MULTI HCD FTMS 0 0 0 23113 438047.34375 0.7824676415716477 1 -0.029510498046875 1 Unmodified _PGSCAFPF_ ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF 2.8892196856762586 0.5377058178582064 1 {I|L}PWP{M(Oxidation (M))|F} 5 6 27.167 0 0 3.2956 0 0 166.00384183661055 0 166.00384183661055 0 14.336068845642203 0 0 0 0 0 0 0 {I|L}PWP{M(Oxidation (M))|F} 3.2956 - 150 + NaN NaN 202915 NaN 18911 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23115 92.005 NaN 460550 35 0 162940 0.261 + 10040 IFDLSEVL 8 51 468.2577284160257 934.5009038988514 2 468.25775146484375 MULTI HCD FTMS 0 0 0 23113 535651.9375 1 0 0 2 Unmodified _IFDLSEVL_ ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant 101.72198241140316 0.04261147255216747 1 {I|L}SEV{I|L} 5 3 66.186 0 0 7.0825 0 0 375.17918593574376 0 375.17918593574376 0 52.2062251842808 0 0 0 2 0 1.274227503252014 0 + {I|L}SEV{I|L} 7.0825 + + 148 NaN NaN 162041.9 NaN 18912 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23116 92.009 NaN 543910 35 0 104350 0.261 + 34575 YPLQLAELL 9 66 530.3077768083975 1058.601000683595 2 530.3079223632812 MULTI HCD FTMS 0 0 0 23113 399658.5 0.8259857036623596 -3 0.08521270751953125 3 Unmodified _YPLQLAELL_ ENSG00000131089|ENST00000671741|ARHGEF9;ENSG00000136002|ENST00000409359|ARHGEF4;ENSG00000182957|ENST00000382108|SPATA13;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13 47.748688679222035 0.03472022231463587 1 Q{I|L}AE{I|L}{I|L} 6 3 63.716 0 0 6.0189 0 0 373.1996327130875 0 373.1996327130875 0 54.010234424404686 0 0 0 1.9247425010840047 0 0 0.3807196863200844 + Q{I|L}AE{I|L}{I|L} 6.0189 + + 332 NaN NaN 170529.3 NaN 18913 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23117 92.012 NaN 305080 35 0 13354 0.262 -1 0 74 422.58167378528765 1264.723191956063 3 422.581787109375 MULTI HCD FTMS 0 0 0 23113 127844.375 0.2964391463260964 24 -0.6255874633789062 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.0092 0 0 1099.6445309226629 0 1099.6445309226629 0 -2.210040265111566 -2.210040265111566 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0092 - 47 + NaN NaN 125387.3 NaN 18914 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23118 92.015 NaN 755730 35 0 92498 0.261 + 6064 FPEALIPVQL 10 90 563.8288636682056 1125.643174403211 2 563.8290405273438 MULTI HCD FTMS 0 0 0 23113 152327.046875 0.8562065224445998 1 -0.029510498046875 5 Unmodified _FPEALIPVQL_ ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 47.748688679222035 0.08597705450879027 1 C(Carbamidomethyl (C))AC(Carbamidomethyl (C)){I|L}[VP]Q{I|L} 8 4 30.886 0 0 2.7438 0 0 166.2078239166861 0 166.2078239166861 0 14.308845489566881 0 0 0 1.579689690656103 0 0 0.7887254899964358 C(Carbamidomethyl (C))AC(Carbamidomethyl (C)){I|L}[VP]Q{I|L} 2.7438 - 1047 + NaN NaN 196106.2 NaN 18915 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23119 92.019 NaN 488500 35 0 56575 0.261 + 614 APFSISAFSYI 11 73 601.8089968687772 1201.6034408043542 2 601.795166015625 MULTI HCD FTMS 0 0 0 23113 15417.2021484375 0.14893328166634856 -3 0.08521270751953125 6 Unmodified _APFSISAFSYI_ ENSG00000111224|ENST00000228820|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-5|PARP11 11.494710602746466 0.35692862141139436 1 A{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}S[VP]YT 9 6 23.65 0 0 1.9682 0 0 0 183.0560701959594 183.0560701959594 -20.29454778768965 0 -20.29454778768965 0 0 0 0 0.3807196863200844 0 A{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}S[VP]YT 1.9682 - 281 + NaN NaN 163014.8 NaN 18916 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23120 92.022 NaN 271150 35 0 82225 0.261 -1 MSMGCVYICL 10 47 617.2609184330407 1232.5072839328814 2 617.7626953125 MULTI HCD FTMS 0 0 0 23113 105504.0859375 1 0 0 7 2 Carbamidomethyl (C) _MSMGC(Carbamidomethyl (C))VYIC(Carbamidomethyl (C))L_ L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|118|2|anti-sense 1.844237919475145 0.46554186016084764 1 D 1 -1 4.6041 0 0 0.37356 0 0 670.1385228018252 444.31113611392817 1114.4496589157534 0 0 0 0 0 0 0 0 0 D 0.37356 - 3 + NaN NaN 126929.8 NaN 18917 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23121 92.025 NaN 541220 35 0 83676 0.261 + 11651 IYVLPMLTI 9 93 539.8145412428973 1077.6145295525946 2 539.8145751953125 MULTI HCD FTMS 0 0 0 23113 93907.9296875 0.5004053543913906 -5 0.14101409912109375 8 Oxidation (M) _IYVLPM(Oxidation (M))LTI_ ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1 101.72198241140316 0.004218805956062179 1 [Y{I|L}]V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}T{I|L} 9 0 + 63.327 0 0 5.8766 5.8766 92.972 0 0 0 22.85479368521652 36.81135436944103 22.85479368521652 63.32667323993049 0 1.7128493362984765 1.6989700043360187 0.28872548999643577 0 + + [Y{I|L}]V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}T{I|L} 5.8766 + + 2696 NaN NaN 168108.6 NaN 18918 4201 23113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23123 92.03 NaN 1311700 35 0 214110 0.327 + 15828 LPIFPDLQV 9 76 521.3024350943118 1040.5903172554235 2 521.7945556640625 MULTI HCD FTMS 0 0 0 23122 98443.4375 0.015035003577255937 14 -0.3636322021484375 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 88.95385435242217 0.004553379958619559 1 {I|L}[{I|L}P]{M(Oxidation (M))|F}[DP]{I|L}QV 9 0 + 40.942 0 0 3.9345 3.9345 80.844 0 0 0 2.7714318065068966 2.2184874961635614 2.2184874961635614 2.2184874961635614 0 1.8851518780601921 0 0.9436726795685342 1.274227503252014 + + {I|L}[{I|L}P]{M(Oxidation (M))|F}[DP]{I|L}QV;{I|L}[{I|L}P]{M(Oxidation (M))|F}[DP]Q{I|L}V;{NN|[MP]|[D{I|L}]|[EV]}[QP]V{M(Oxidation (M))|F}[{I|L}P]{I|L} 3.9345;3.7213;0.45901 +;-;- + 272 + NaN NaN 287365.8 NaN 18919 4202 23122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23124 92.035 NaN 108280 35 0 10136 0.261 + 14220 LAVFLVPLC 9 52 487.79072137142896 973.5668898096579 2 487.79052734375 MULTI HCD FTMS 0 0 0 23122 49486.34765625 0.7515209862827379 1 -0.01622772216796875 2 Unmodified _LAVFLVPLC_ REV__ENSG00000092096|ENST00000354772|SLC22A17;REV__ENST00000557699.5_1_14:23818379-23821759:-|nuORF;REV__nc|ENSG00000092096|Q8WUG5-3|SLC22A17;REV__nc|ENSG00000092096|Q8WUG5|SLC22A17 2.302733041254933 0.33356062215410776 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.47291 0 0 114.2042818060665 709.2709444635374 823.4752262696039 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.47291 + + 2 + NaN NaN 114046 NaN 18920 4202 23122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23125 92.038 NaN 71747 35 0 10013 0.261 + 27988 TFITVSALF 9 41 499.7815080364851 997.5484631397702 2 499.7817687988281 MULTI HCD FTMS 0 0 0 23122 20268.267578125 0.4856179703141542 7 -0.16992950439453125 3 Unmodified _TFITVSALF_ ENSG00000070476|ENST00000389709|ZXDC;ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB;nc|ENSG00000070476|Q2QGD7-2|ZXDC;nc|ENSG00000070476|Q2QGD7-3|ZXDC 23.1484247019978 0.1603590852062899 1 {M(Oxidation (M))|F} 1 8 21.99 0 0 2.2044 0 0 832.4697258124249 0 832.4697258124249 0 12.385606273598313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.2044 + + 16 + NaN NaN 90731.6 NaN 18921 4202 23122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23126 92.041 NaN 77399 35 0 4596.8 0.261 + 33779 YLFVPLKF 8 41 513.8053215487769 1025.5960901643537 2 513.8054809570312 MULTI HCD FTMS 0 0 0 23122 9705.8544921875 0.25956064165737813 5 -0.1175537109375 4 Unmodified _YLFVPLKF_ REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5098 0 0 860.5174291309537 0 860.5174291309537 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5098 + + 17 + NaN NaN 91155.9 NaN 18922 4202 23122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23128 92.046 NaN 3138100 35 0 525320 0.327 + 28935 TWYPVSIPAF 10 102 590.8052199146704 1179.5958868961407 2 590.8052368164062 MULTI HCD FTMS 0 0 0 23127 1149938.5 0.755261870683386 2 -0.05584716796875 1 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 126.56589448801843 2.6506179816573442E-05 1 {[WT]|[RM]}YPVS{I|L}PA{M(Oxidation (M))|F} 10 0 + 87.436 0 0 7.4124 7.4124 88.99 0 0 0 7.470683224211484 7.470683224211484 7.470683224211484 7.470683224211484 0 3.4049471895720984 0 1.3243923658886185 0 + + {[WT]|[RM]}YPVS{I|L}PA{M(Oxidation (M))|F};[YN]{I|L}QQS{I|L}CV{I|L};[{M(Oxidation (M))|F}V]SGQQS{I|L}CV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}SVPDVA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VGQQS{I|L}CV{I|L};[YN][NG]VVS{I|L}CV{I|L};[YN]QAAVS{I|L}CV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DP]TS{I|L}CV{I|L};[YN]Q[Q{I|L}]S{I|L}CV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}PVS{I|L}CV{I|L} 7.4124;6.779;6.478;6.3374;6.3049;6.3033;6.0869;6.0497;5.9701;5.8836 +;-;-;-;-;-;-;-;-;- + 14970 NaN NaN 573482.4 NaN 18923 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23129 92.051 NaN 702410 35 0 26295 0.261 -1 0 86 633.3692585006554 1264.7239640681107 2 633.369384765625 MULTI HCD FTMS 0 0 0 23127 916832.25 0.2877319046833719 30 -0.7929306030273438 2 NaN NaN 1 {[HG]|PP}N 3 -1 11.043 0 0 0.87316 0 0 0 953.5171315813849 953.5171315813849 0.9543872825297957 0 0 0 0 0.6861818737241735 0 0 0 {[HG]|PP}N 0.87316 - 160 + NaN NaN 195227.7 NaN 18924 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23130 92.054 NaN 350260 35 0 31397 0.261 + 6940 FPVNQLFDML 10 63 620.3076264800765 1238.6007000269528 2 620.3079223632812 MULTI HCD FTMS 0 0 0 23127 129719.2421875 0.30730743738181276 7 -0.18331146240234375 3 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 72.96794272382148 0.014068588219715357 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 5 5 55.701 0 0 4.4971 0 0 585.2918015118782 0 585.2918015118782 0 32.05591267411002 0 0 0 1.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4.4971 + + 148 NaN NaN 149426.6 NaN 18925 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23131 92.058 NaN 222110 35 0 47754 0.261 + -1 SATVRFICPI 10 53 582.3168956238269 NaN 0 582.3031616210938 PEAK HCD FTMS 0 0 0 23127 12713.6123046875 0.6378597409489861 -1 0.01622772216796875 4 Carbamidomethyl (C) _SATVRFIC(Carbamidomethyl (C))PI_ REV__ENSG00000143776|ENST00000366766|CDC42BPA;REV__ENSG00000198752|ENST00000361246|CDC42BPB;REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-5|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25|CDC42BPA 3.944395688203298 0.33680843299986807 1 {I|L}T{M(Oxidation (M))|F} 3 -1 24.253 0 0 2.086 0 0 115.09249811284265 683.3054293268186 798.3979274396613 0 0 0 0 0 0 0 0.805462187404089 0 {I|L}T{M(Oxidation (M))|F} 2.086 - 13 + NaN NaN 118583.7 NaN 18926 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23132 92.061 NaN 256350 35 0 51615 0.264 -1 0 35 405.11878050200676 808.2230080708135 2 405.1188659667969 MULTI HCD FTMS 0 0 0 23127 96651.703125 0.31351813290509856 15 -0.39981842041015625 5 NaN NaN 1 {[C(Carbamidomethyl (C))E]|[WC]}P 3 -1 3.5565 0 0 0.44004 0 0 0 419.0641084948948 419.0641084948948 3.0719686320084367 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))E]|[WC]}P 0.44004 - 4 NaN NaN 121971.1 NaN 18927 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23133 92.064 NaN 205280 35 0 26604 0.261 + 10328 ILPPQLALF 9 51 506.3154422632059 1010.6163315932118 2 506.31524658203125 MULTI HCD FTMS 0 0 0 23127 65223.33203125 0.2894463614315341 12 -0.321136474609375 6 Unmodified _ILPPQLALF_ ENSG00000106546|ENST00000242057|AHR 39.957323273324995 0.06554068735427583 1 D{I|L}A{I|L}{M(Oxidation (M))|F} 5 5 45.015 0 0 4.4542 0 0 433.31416518379064 0 433.31416518379064 0 38.02505690161059 0 0 0 1.7302046884880937 0 0 0 D{I|L}A{I|L}{M(Oxidation (M))|F} 4.4542 - 125 NaN NaN 108039 NaN 18928 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23134 92.068 NaN 84578 35 0 8217.8 0.261 + 30353 VLGVRARC 8 49 437.25754115650903 NaN 0 437.257568359375 PEAK HCD FTMS 0 0 0 23127 46681.09765625 0.4558869980683183 15 -0.39981842041015625 7 Unmodified _VLGVRARC_ REV__ENST00000461325.1_1_3:52551001-52552043:+|nuORF 2.577480529830294 0.38822285293237185 1 Q 1 -1 0.48455 0 0 0.055536 0 0 524.3093500358713 217.10769067935783 741.4170407152291 0 0 0 0 0 0 0 0 0 Q 0.055536 - 2 + NaN NaN 101894.3 NaN 18929 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23135 92.071 NaN 69617 35 0 6432.1 0.261 + 16704 LYAALTALL 9 41 474.7918576257879 947.5691623183758 2 474.7919006347656 MULTI HCD FTMS 0 0 0 23127 28234.013671875 0.044809920061253734 12 -0.321136474609375 8 Unmodified _LYAALTALL_ ENSG00000127481|ENST00000375254|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4 21.74664581756881 0.17247014374749275 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V 3 8 27.447 0 0 2.8966 0 0 0 601.3570095686289 601.3570095686289 1.3772686722014527 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V 2.8966 - 55 NaN NaN 85961.5 NaN 18930 4203 23127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23137 92.076 NaN 2579900 35 0 511430 0.327 + 20238 NYLPFIMEL 9 87 578.2912249331946 1154.567896933189 2 578.2916870117188 MULTI HCD FTMS 0 0 0 23136 1439530.5 0.7089327574659208 -6 0.16058349609375 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 152.41221235671458 6.276234901293889E-06 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 100.7 0 0 8.7221 8.7221 96.394 0 0 0 24.535247228595267 14.973024840566467 14.973024840566467 28.066884185923655 0 2.555462187404089 1.2218487496163564 0 1.7346368802282015 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[TV]|[{I|L}S]}{[WT]|[RM]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[CA]|SS}{[TV]|[{I|L}S]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}YYP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}YYP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}VYYP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 8.7221;6.2912;4.6827;4.2114;4.1612;3.9518;2.6323;2.2572;2.1047;1.9484 +;-;-;-;-;-;-;-;-;- + 1284 NaN NaN 479298.6 NaN 18931 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23138 92.08 NaN 528890 35 0 92655 0.261 + 14684 LGYLSHMSSSI 11 69 597.7953129018878 1193.5760728705754 2 597.7951049804688 MULTI HCD FTMS 0 0 0 23136 278498.5 1 0 0 2 Unmodified _LGYLSHMSSSI_ REV__ENSG00000141232|ENST00000499247|TOB1 21.536976647645854 0.2694300281126922 1 PVS{I|L}PA{M(Oxidation (M))|F} 7 -1 48.007 0 0 4.0221 0 0 464.16971900713014 0 464.16971900713014 0 27.03820181511894 0 0 0 2.1989700043360187 0 0.2742275032520141 0 PVS{I|L}PA{M(Oxidation (M))|F} 4.0221 - 371 + NaN NaN 167472.3 NaN 18932 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23139 92.084 NaN 102610 35 0 15586 0.262 -1 0 48 480.2809322442964 958.5473115553929 2 480.2810363769531 MULTI HCD FTMS 0 0 0 23136 114347.2421875 0.24868399957292087 4 -0.10784149169921875 3 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.7292 0 0 172.1198393377968 670.3186129205686 842.4384522583655 0 0 0 0 0 0 0 0 0 {I|L} 0.7292 - 5 + NaN NaN 94702 NaN 18933 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23140 92.087 NaN 336500 35 0 89760 0.261 + 23527 RNLTRVMI 8 75 501.7972731010335 1001.579993268867 2 502.814453125 MULTI HCD FTMS 0 0 0 23136 8033.57763671875 0.5261644940207385 -1 0.029632568359375 4 Unmodified _RNLTRVMI_ ENST00000270443.8_1_19:53472241-53472481:-|nuORF 7.910154910731844 0.5302565402355366 1 M{I|L} 2 6 14.949 0 0 1.4925 0 0 739.4559988308772 0 739.4559988308772 0 1.8495564253589691 0 0 0 0 0 0 0 + M{I|L} 1.4925 + + 37 NaN NaN 137005.8 NaN 18934 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23141 92.091 NaN 252910 35 0 38439 0.261 + 5688 FPAGFVLQL 9 46 496.2840995181085 990.5536461030171 2 496.2843933105469 MULTI HCD FTMS 0 0 0 23136 115416.03125 0.7419085239832792 -2 0.04586029052734375 5 Unmodified _FPAGFVLQL_ ENSG00000168005|ENST00000294244|SPINDOC 53.57557251787612 0.02656881086235134 1 V{I|L}Q{I|L} 4 5 48.928 0 0 4.9394 0 0 519.248065872638 0 519.248065872638 0 26.232492903979008 0 0 0 1.3494850021680094 0 0 0.3494850021680094 + V{I|L}Q{I|L} 4.9394 + + 111 NaN NaN 131421.6 NaN 18935 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23142 92.094 NaN 318580 35 0 21939 0.261 + 13748 KYPSPFFVF 9 71 566.2979461042614 1130.5813392753228 2 566.2986450195312 MULTI HCD FTMS 0 0 0 23136 72125.03125 0.623357054471741 16 -0.429168701171875 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 27.628801355627647 0.12213550946336599 1 {I|L}RV{M(Oxidation (M))|F} 4 7 35.675 0 0 3.1555 0 0 597.24418837715 0 597.24418837715 0 9.612496903393861 0 0 0 0.6747425010840047 0 0 0 {I|L}RV{M(Oxidation (M))|F} 3.1555 - 590 NaN NaN 131426.4 NaN 18936 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23143 92.097 NaN 105790 35 0 11566 0.261 + 22472 QRARIDVI 8 51 485.7945861810383 969.5746194288766 2 485.7947082519531 MULTI HCD FTMS 0 0 0 23136 31600.5234375 0.3470398117944221 4 -0.10784149169921875 7 Unmodified _QRARIDVI_ REV__ENSG00000196090|ENST00000373187|PTPRT;REV__nc|ENSG00000196090|O14522-1|PTPRT 10.823927491677226 0.514154816617796 1 {I|L}[DV]{I|L} 4 -1 23.188 0 0 2.3915 0 0 511.30076796699376 0 511.30076796699376 0 20.713337517843655 0 0 0 1 0 0 0 {I|L}[DV]{I|L} 2.3915 + + 9 NaN NaN 93735.3 NaN 18937 4204 23136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23145 92.102 NaN 1507200 35 0 174730 0.327 + 1450 AYSLNFPLL 9 84 519.2870377815902 1036.5595226299804 2 519.2872924804688 MULTI HCD FTMS 0 0 0 23144 523238.40625 0.7516815791193817 1 -0.0261383056640625 1 Unmodified _AYSLNFPLL_ ENSG00000140400|ENST00000267978|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1 181.3275282027936 9.859558525874733E-13 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}N{M(Oxidation (M))|F}P{I|L}{I|L} 9 0 + 101.36 0 0 9.7786 9.7786 96.772 0 0 0 14.805906063131715 77.91817743248869 14.805906063131715 20.955612550363796 0 2.399649864804614 1.154901959985743 1.8539171939081172 1.1747425010840047 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}N{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}GG{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}T][YG]N{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}T][YG]GG{M(Oxidation (M))|F}P{I|L}{I|L} 9.7786;7.757;6.5098;4.4882 +;-;-;- + 702 NaN NaN 324333.7 NaN 18938 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23146 92.107 NaN 860690 35 0 255340 0.261 + 6490 FPIPGEPGFPL 11 65 585.8135101996211 1169.612467466042 2 585.813720703125 MULTI HCD FTMS 0 0 0 23144 454249.6875 0.7459978287219421 1 -0.0261383056640625 2 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 49.93300154707207 0.08169340801462911 1 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L} 10 6 + 64.772 0 0 5.5379 5.5379 86.23 0 0 0 12.218487496163561 15 12.218487496163561 9.035984316004217 0 1.8807196863200843 1.3979400086720375 1.1861818737241734 0 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L};[{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA]E[WP]P{I|L};[{I|L}P]{M(Oxidation (M))|F}[WP][TA]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA]E[WP]P{I|L};[{I|L}P]{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F}[PG]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA][WP]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA][WP]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WP][TA]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA]E[HD]K{I|L} 5.5379;4.7653;4.4932;4.4398;4.2358;3.7587;3.7207;3.4633;3.3951;3.2898 -;-;-;-;-;-;-;-;-;- 843 NaN NaN 216654.2 NaN 18939 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23147 92.11 NaN 705320 35 0 107420 0.261 + 6992 FPWDIDEAL 9 89 553.2635587796477 1104.5125646260954 2 553.2639770507812 MULTI HCD FTMS 0 0 0 23144 269528.125 0.4458901274697042 5 -0.12746429443359375 3 Unmodified _FPWDIDEAL_ ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1;nc|ENSG00000186625|O75449-2|KATNA1 64.23631603340823 0.01165516075559909 1 DEA{I|L} 4 5 41.912 0 0 3.7947 0 0 658.310675307061 0 658.310675307061 0 16.506375246153908 0 0 0 1.25 0 0.3494850021680094 0 + DEA{I|L} 3.7947 + + 1333 NaN NaN 183697.9 NaN 18940 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23148 92.113 NaN 269810 35 0 38801 0.261 + 19512 NRLSKKEL 8 56 494.300842902745 986.58713287229 2 494.30108642578125 MULTI HCD FTMS 0 0 0 23144 135076.390625 0.10506498483398766 11 -0.29155731201171875 4 Unmodified _NRLSKKEL_ ENSG00000019186|ENST00000216862|CYP24A1;ENST00000487593.1_1_20:52779237-52781081:-|nuORF;nc|ENSG00000019186|Q07973-2|CYP24A1;nc|ENSG00000019186|Q07973-3|CYP24A1 2.302733041254933 0.5385759549224092 1 D 1 8 7.034 0 0 0.71297 0 0 396.2344239873275 472.30862679387957 868.5430507812071 0 0 0 0 0 0.3054621874040891 0 0 0 D 0.71297 - 6 + NaN NaN 131752.4 NaN 18941 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23149 92.117 NaN 219260 35 0 20811 0.261 + -1 LTRLKRCFFL 10 73 451.93240636375714 1352.7753896914714 3 452.2671813964844 MULTI HCD FTMS 0 0 0 23144 52696.78125 0.2940317105996066 -16 0.43901824951171875 5 Carbamidomethyl (C) _LTRLKRC(Carbamidomethyl (C))FFL_ REV__ENSG00000171017|ENST00000306708|LRRC8E 0.776531954647913 0.4711933975711956 1 E 1 -1 5.4846 0 0 0.40543 0 0 694.4633302205715 526.2305391900999 1220.6938694106714 0 0 0 0 0 0 0 0 0 E 0.40543 - 27 + NaN NaN 124973.5 NaN 18942 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23150 92.12 NaN 177610 35 0 17447 0.261 + -1 GYWAQALC 8 55 484.71827168777475 967.4219904423495 2 484.7183532714844 MULTI HCD FTMS 0 0 0 23144 51916.3515625 0.2822628334303051 -1 0.026214599609375 6 Carbamidomethyl (C) _GYWAQALC(Carbamidomethyl (C))_ REV__ENST00000265138.3_1_5:90665856-90665976:-|nuORF 0.7936320650641473 0.540814922690045 1 C(Carbamidomethyl (C))SP{I|L}[VP] 6 -1 14.09 0 0 1.4565 0 0 296.0629139630875 0 296.0629139630875 0 -0.6022624789891751 -0.6022624789891751 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C))SP{I|L}[VP] 1.4565 - 24 NaN NaN 101751.7 NaN 18943 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23151 92.123 NaN 126680 35 0 11749 0.261 + 35189 YVLAFKEKILF 11 51 457.60797884175486 1369.8021071254645 3 457.60784912109375 MULTI HCD FTMS 0 0 0 23144 34538.60546875 0.3291796163565939 -20 0.5299606323242188 7 Unmodified _YVLAFKEKILF_ ENST00000552861.5_1_12:95452024-95452138:-|nuORF 0.5059551277355931 0.4167017191902429 1 K 1 10 2.4743 0 0 0.18063 0 0 999.5826074690177 239.10415064029533 1238.6867581093131 0 0 0 0 0 0 0 0 0 + K 0.18063 + + 12 + NaN NaN 100973.8 NaN 18944 4205 23144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23153 92.128 NaN 312330 35 0 13389 0.327 -1 0 88 641.8824831880886 1281.750413442977 2 641.882568359375 MULTI HCD FTMS 0 0 0 23152 444727.5625 0.22808595902387363 28 -0.73724365234375 1 NaN NaN 1 A[RV]N 4 -1 12.224 0 0 0.95366 0 0 823.4815540998062 0 823.4815540998062 0 -1.086652542227693 -1.086652542227693 0 0 0.4247425010840047 0 0 0.3054621874040891 A[RV]N 0.95366 - 162 NaN NaN 145031.5 NaN 18945 4206 23152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23154 92.133 NaN 354660 35 0 109130 0.264 -1 0 42 404.1208838708466 806.2272148084933 2 404.120849609375 MULTI HCD FTMS 0 0 0 23152 135844.40625 1 0 0 2 NaN NaN 1 N 1 -1 3.4949 0 0 0.43348 0 0 420.0331362946245 269.1364294455388 689.1695657401633 0 0 0 0 0 0 0 0 0 N 0.43348 - 3 + NaN NaN 133184.2 NaN 18946 4206 23152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23155 92.136 NaN 259430 35 0 50870 0.261 + 18401 MPSILADVF 9 46 496.7595996003174 991.5046462674349 2 496.7600402832031 MULTI HCD FTMS 0 0 0 23152 113006.5859375 1 0 0 3 Unmodified _MPSILADVF_ ENSG00000125676|ENST00000245838|THOC2 25.399314129420986 0.14091189997036632 1 ADV{M(Oxidation (M))|F} 4 5 39.897 0 0 4.0239 0 0 541.2922230451187 0 541.2922230451187 0 7.95880017344075 0 0 0 1.5484550065040281 0 0 0 + ADV{M(Oxidation (M))|F} 4.0239 + + 64 NaN NaN 119994.2 NaN 18947 4206 23152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23156 92.143 NaN 212580 35 0 41764 0.261 + 947 AYEIIDQFF 9 63 573.2791786536349 1144.5438043740696 2 573.279052734375 MULTI HCD FTMS 0 0 0 23152 59257.765625 0.020810294293625676 15 -0.39630889892578125 4 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 24.990960013464015 0.14443998892849796 1 [YV][DV]{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 3 + 52.144 0 0 4.5559 4.5559 90.386 0 0 0 11.029543537615183 46.57067783193931 11.029543537615183 52.14387173178174 0 1.9802046884880937 2 0 0 [YV][DV]{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5559 - 135 NaN NaN 116406.8 NaN 18948 4206 23152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23158 92.148 NaN 423600 35 0 64273 0.327 + 34576 YPLQLAELL 9 61 530.3077768083975 1058.601000683595 2 530.3079223632812 MULTI HCD FTMS 0 0 0 23157 212080 0.43831182880562586 3 -0.0819854736328125 1 Unmodified _YPLQLAELL_ ENSG00000131089|ENST00000671741|ARHGEF9;ENSG00000136002|ENST00000409359|ARHGEF4;ENSG00000182957|ENST00000382108|SPATA13;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13 41.8396318013385 0.056899836730939755 1 AE{I|L}{I|L} 4 5 43.928 0 0 4.1496 0 0 614.3446705778999 0 614.3446705778999 0 31.70432836127297 0 0 0 1.3494850021680094 0 0 0 + AE{I|L}{I|L} 4.1496 + + 188 NaN NaN 137832.9 NaN 18949 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23159 92.152 NaN 1456500 35 0 210000 0.261 + 26856 SYIPLFPQL 9 82 539.3024627553938 1076.5903725775875 2 539.302734375 MULTI HCD FTMS 0 0 0 23157 408776.65625 0.21439113511785596 -6 0.147064208984375 2 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 60.07390631473393 0.0174780869009295 1 [Y{I|L}]SP{I|L}{M(Oxidation (M))|F}[QP]{I|L} 9 2 + 53.628 0 0 4.9813 4.9813 82.485 0 0 0 2.4472749489669354 3.328431736750673 2.4472749489669354 2.4472749489669354 0 1.8252574989159953 1.2218487496163564 0.5866968715561641 0 [Y{I|L}]SP{I|L}{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}Q[{I|L}P]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}PAG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}PQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[{I|L}A][PG];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PQ{I|L}[{I|L}P]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}AA[VP];[Y{I|L}]V[TP]{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]SP{I|L}{I|L}PQ{M(Oxidation (M))|F} 4.9813;4.754;4.3647;4.3076;4.2486;3.7993;3.6207;3.4722;3.428;3.3812 -;+;-;-;-;-;-;-;-;- + 1358 NaN NaN 308750.4 NaN 18950 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23160 92.156 NaN 195200 35 0 8867.4 0.262 -1 0 66 422.58167378528765 1264.723191956063 3 422.5817565917969 MULTI HCD FTMS 0 0 0 23157 130915.65625 0.30356067976765255 30 -0.7966384887695312 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.0092 0 0 1099.644057900202 0 1099.644057900202 0 3.2301878825276376 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0092 - 10 + NaN NaN 121833.3 NaN 18951 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23161 92.159 NaN 147470 35 0 33644 0.261 -1 DIMLSELV 8 42 468.242788505331 NaN 0 468.25787353515625 PEAK HCD FTMS 0 0 0 23157 5560.56103515625 0.6557746430534651 1 -0.0361480712890625 4 Oxidation (M) _DIM(Oxidation (M))LSELV_ L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|8|2|sense 5.230669730166228 0.38822285293237185 1 VEESE 5 -1 18.404 0 0 1.9695 0 0 131.06441567762084 227.1396883600219 358.20410403764276 0 0 0 0 0 0 0 0.4247425010840047 0 VEESE 1.9695 - 24 + NaN NaN 111550.2 NaN 18952 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23162 92.162 NaN 469500 35 0 39582 0.261 + 28734 TSVSFSFLCVI 11 84 601.8089968687772 1201.6034408043542 2 601.7957763671875 MULTI HCD FTMS 0 0 0 23157 58508.20703125 0.565201078229445 3 -0.0819854736328125 5 Unmodified _TSVSFSFLCVI_ nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 18.1463463914782 0.2989727007011538 1 CV{I|L} 3 8 24.609 0 0 2.048 0 0 868.4095655728814 0 868.4095655728814 0 1.3772686722014527 0 0 0 0.3807196863200844 0 0 0 + CV{I|L} 2.048 + + 519 NaN NaN 159640.8 NaN 18953 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23163 92.166 NaN 188690 35 0 30040 0.261 + 33785 YLGIWDSPYV 10 51 606.800351270767 1211.586149608334 2 606.8003540039062 MULTI HCD FTMS 0 0 0 23157 51732.42578125 0.30775659022222984 3 -0.0819854736328125 6 Unmodified _YLGIWDSPYV_ REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant 15.847184025352803 0.36288280428275715 1 S{I|L}[PA]{M(Oxidation (M))|F} 5 -1 36.695 0 0 3.0286 0 0 678.3016834943375 0 678.3016834943375 0 25.012262311882765 0 0 0 1.5 0 0.4247425010840047 0 S{I|L}[PA]{M(Oxidation (M))|F} 3.0286 - 174 NaN NaN 116490.6 NaN 18954 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23164 92.169 NaN 209650 35 0 43245 0.261 + 25112 SAESIPQSYN 10 48 548.2501327761121 1094.485712619024 2 548.250244140625 MULTI HCD FTMS 0 0 0 23157 65514.4609375 0.5924498533438016 -6 0.147064208984375 7 Unmodified _SAESIPQSYN_ REV__ENSG00000139178|ENST00000266542|C1RL 4.5288652416199255 0.4513317009562028 1 SA 2 -1 20.969 0 0 1.9159 0 0 0 933.3823946156048 933.3823946156048 10 0 0 0 0 0 0 0 0 SA 1.9159 + + 16 + NaN NaN 115652 NaN 18955 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23165 92.172 NaN 176600 35 0 27920 0.261 + 4384 EYAAGPFALF 10 46 543.2682565649573 1084.5219601967144 2 543.2689819335938 MULTI HCD FTMS 0 0 0 23157 52623.171875 0.46299438964104794 -6 0.147064208984375 8 Unmodified _EYAAGPFALF_ ENSG00000198888|ENST00000361390|MT-ND1 54.773552608820026 0.0604291769046433 1 [YT]VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L} 8 7 50.411 0 0 4.6482 0 0 0 162.05623804263908 162.05623804263908 35.03714405160309 0 0 0 0 1.8807196863200843 1.6989700043360187 0 0 [YT]VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L} 4.6482 - 122 + NaN NaN 106872 NaN 18956 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23166 92.176 NaN 202300 35 0 20814 0.261 + 10614 IPQFHRLN 8 59 512.7890393481189 1023.5635257630378 2 512.788818359375 MULTI HCD FTMS 0 0 0 23157 24580.03125 0.6378170428079695 1 -0.0361480712890625 9 Unmodified _IPQFHRLN_ ENSG00000138722|ENST00000264790|MMRN1 7.910154910731844 0.5302565402355366 1 {I|L}P{I|L} 3 5 22.703 0 0 2.218 0 0 0 697.3162935846311 697.3162935846311 0.5630250076728771 0 0 0 0 0 0 0 0 {I|L}P{I|L} 2.218 - 100 + NaN NaN 119369.1 NaN 18957 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23167 92.179 NaN 201340 35 0 21638 0.261 + 20634 PFESSVIFS 9 58 506.7529338445066 1011.4913147558132 2 506.75250244140625 MULTI HCD FTMS 0 0 0 23157 32642.86328125 0.023589652849159155 16 -0.4193572998046875 10 Unmodified _PFESSVIFS_ REV__ENSG00000166012|ENST00000448108|TAF1D 15.847184025352803 0.2234401846867398 1 VS{I|L}{M(Oxidation (M))|F} 4 -1 26.16 0 0 2.5863 0 0 547.2300975700695 0 547.2300975700695 0 12.347594070116015 0 0 0 0.8252574989159953 0 0 0 VS{I|L}{M(Oxidation (M))|F} 2.5863 - 133 + NaN NaN 107972.6 NaN 18958 4207 23157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23169 92.184 NaN 2653700 35 0 622800 0.327 + 10494 IPEDLPFVL 9 76 521.7943880903734 1041.5742232475468 2 521.7946166992188 MULTI HCD FTMS 0 0 0 23168 1632466.625 0.7001245668225735 -5 0.13747406005859375 1 Unmodified _IPEDLPFVL_ ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant 48.345845343767074 0.03388484103555672 1 P{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.4342 0 0 567.2901741226061 0 567.2901741226061 0 25.519155386135353 0 0 0 1.4247425010840047 0 0 0 + P{M(Oxidation (M))|F}V{I|L} 4.4342 + + 479 NaN NaN 490808.8 NaN 18959 4208 23168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23170 92.188 NaN 641350 35 0 171370 0.261 + 21054 PLTVIDMEF 9 64 532.7703529432426 1063.5261529532852 2 532.7857666015625 MULTI HCD FTMS 0 0 0 23168 5419.04541015625 0.060034545028560725 -18 0.4878387451171875 2 Unmodified _PLTVIDMEF_ ENSG00000112159|ENST00000369393|MDN1 8.593279151180031 0.2858735984551981 1 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8 5 59.405 0 0 5.5857 0 0 113.05448662547265 0 113.05448662547265 0 50.53132251810936 0 0 0 0.7302046884880937 0 0.4247425010840047 0 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 5.5857 - 495 + NaN NaN 177550.9 NaN 18960 4208 23168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23171 92.192 NaN 201820 35 0 52847 0.261 -1 ACVYVCMCVL 10 43 617.2609184330407 1232.5072839328814 2 617.7621459960938 MULTI HCD FTMS 0 0 0 23168 14956.1943359375 0.14175938498531196 7 -0.18366241455078125 3 2 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))VYVC(Carbamidomethyl (C))M(Oxidation (M))CVL_ nc|nan|Q96N68|C18orf15 4.3292370932331545 0.45238836448149167 1 C[{I|L}V] 3 -1 11.695 0 0 0.94885 0 0 899.3402134756533 0 899.3402134756533 0 8.595756168365016 0 0 0 0.4247425010840047 0 0 0 C[{I|L}V] 0.94885 + + 12 + NaN NaN 113198.6 NaN 18961 4208 23168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23172 92.195 NaN 315150 35 0 28417 0.261 + -1 GFSALLCLHD 10 63 566.7752820267135 1131.536011120227 2 566.7740478515625 MULTI HCD FTMS 0 0 0 23168 18159.759765625 0.29087264386606654 7 -0.18366241455078125 4 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 18.1463463914782 0.3413772152514074 1 WSW 3 -1 35.872 0 0 3.1702 0 0 654.3344217377017 0 654.3344217377017 0 11.17931555708239 0 0 0 0.8807196863200843 0 0.3252574989159953 0 WSW 3.1702 - 495 + NaN NaN 153047.7 NaN 18962 4208 23168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23174 92.2 NaN 460410 35 0 62768 0.327 -1 0 80 633.3545017534481 632.347225286848 1 633.3692626953125 MULTI HCD FTMS 0 0 0 23173 42289.703125 0.3953759897123455 -4 0.0978546142578125 1 NaN NaN 1 {[MS]|[{M(Oxidation (M))|F}A]}K 3 -1 3.9524 0 0 0.62504 0 0 0 283.11802087955317 283.11802087955317 -3.0102999566398125 0 -3.0102999566398125 0 0 0 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}K 0.62504 - 19 + NaN NaN 155157.7 NaN 18963 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23175 92.204 NaN 1995300 35 0 227060 0.261 + 615 APFTEGISFVL 11 99 590.8160695977126 1179.6175862622251 2 590.8165893554688 MULTI HCD FTMS 0 0 0 23173 408980.0625 0.5823659467338793 3 -0.08544158935546875 2 Unmodified _APFTEGISFVL_ ENSG00000128335|ENST00000358502|APOL2 103.35351024395868 0.021349619833249373 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DP]{[VA]|[{I|L}G]}S{M(Oxidation (M))|F}V{I|L} 11 4 + 73.236 0 0 6.2085 6.2085 84.605 0 0 0 2.5151553326951728 19.31627155200666 2.5151553326951728 2.604473030873919 0 1.7302046884880937 1.3979400086720375 1.7474250108400469 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DP]{[VA]|[{I|L}G]}S{M(Oxidation (M))|F}V{I|L};[PA]{M(Oxidation (M))|F}TE{[VA]|[{I|L}G]}S{M(Oxidation (M))|F}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DP]T[VG]{M(Oxidation (M))|F}V{I|L};[PA]{M(Oxidation (M))|F}TET[VG]{M(Oxidation (M))|F}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VGRA[QT]CV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DP]{[VA]|[{I|L}G]}SV{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VGRA{[QG]|[NA]}{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}V]S[DP]{[VA]|[{I|L}G]}S{M(Oxidation (M))|F}V{I|L};[PA]{M(Oxidation (M))|F}TE{[VA]|[{I|L}G]}SV{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DP][VS]A{M(Oxidation (M))|F}V{I|L} 6.2085;5.9877;5.5521;5.3314;5.1954;5.0201;4.9861;4.807;4.7993;4.7866 -;+;-;-;-;-;-;-;-;- + 11074 NaN NaN 382327.6 NaN 18964 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23176 92.208 NaN 338080 35 0 45883 0.261 + 6941 FPVNQLFDML 10 57 620.3076264800765 1238.6007000269528 2 620.3077392578125 MULTI HCD FTMS 0 0 0 23173 92573.3203125 0.21930801749550646 13 -0.340789794921875 3 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 70.33199760932243 0.017191949488996158 1 NQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 7 3 71.49 0 0 5.7719 0 0 343.18907363105626 0 343.18907363105626 0 56.79760434629635 0 0 0 2.3494850021680094 0 0 0.805462187404089 + NQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 5.7719 + + 119 NaN NaN 132617.6 NaN 18965 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23177 92.211 NaN 486190 35 0 43710 0.261 -1 MDDEVLEIF 9 82 563.7540595963809 NaN 0 563.7710571289062 PEAK HCD FTMS 0 0 0 23173 5225.49462890625 0.36656808454929973 6 -0.1674346923828125 4 Oxidation (M) _M(Oxidation (M))DDEVLEIF_ tr|U7T3T9|U7T3T9_FUSNUBbox-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00258PE=4SV=1 11.640296217721598 0.23883959125015683 1 {I|L}SD 3 -1 15.177 0 0 1.3485 0 0 129.01213272338902 678.3339550916696 807.3460878150586 0 0 0 0 0 0 0 1 0 {I|L}SD 1.3485 - 196 + NaN NaN 159373.9 NaN 18966 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23178 92.215 NaN 428520 35 0 104960 0.264 -1 0 37 405.1186809059501 808.2228088787002 2 405.1189270019531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 {[C(Carbamidomethyl (C))E]|[WC]}P 3 -1 2.2403 0 0 0.27719 0 0 0 419.0632073984846 419.0632073984846 1.2712113930952502 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))E]|[WC]}P 0.27719 - 5 NaN NaN 140811.3 NaN 18967 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23179 92.218 NaN 452620 35 0 64497 0.261 + 33947 YLSELHPQL 9 73 550.2937097489834 1098.5728665647666 2 550.2943725585938 MULTI HCD FTMS 0 0 0 23173 115716.84375 0.4284972862934386 -4 0.0978546142578125 6 Unmodified _YLSELHPQL_ ENST00000278426.7_2_11:57263521-57268513:-|nuORF;ENST00000533515.5_1_11:57263521-57267149:-|nuORF 24.020572477871973 0.15282392193088168 1 {I|L}YSP{I|L}{M(Oxidation (M))|F}K 7 7 53.37 0 0 4.8581 0 0 0 247.07222715746533 247.07222715746533 28.396482605503195 0 0 0 0 1.8979400086720375 1.2218487496163564 0.4247425010840047 0 {I|L}YSP{I|L}{M(Oxidation (M))|F}K 4.8581 - 346 + NaN NaN 165708.3 NaN 18968 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23180 92.221 NaN 118280 35 0 14747 0.261 + 7794 FYPHDVLSL 9 52 545.7820212636442 NaN 0 545.7825927734375 PEAK HCD FTMS 0 0 0 23173 26192.646484375 0.6087433834633906 -4 0.0978546142578125 7 Unmodified _FYPHDVLSL_ ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1 19.256988751693697 0.19238547928067054 1 S{I|L} 2 7 19.464 0 0 1.7864 0 0 131.09552338490704 755.3173311822874 886.4128545671945 0 0 0 0 0 1 0 0 0 + S{I|L} 1.7864 + + 37 + NaN NaN 100130.2 NaN 18969 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23181 92.225 NaN 99323 35 0 10815 0.261 + 34821 YRHVPLQSL 9 50 556.8138294065042 NaN 0 556.81396484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YRHVPLQSL_ ENSG00000154822|ENST00000615277|PLCL2;nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2 9.38312468134398 0.24977752951804 1 Q{I|L}N 3 8 14.966 0 0 1.3463 0 0 218.12649793759073 535.2703951471311 753.3968930847218 0 0 0 0 0 0.805462187404089 0 0 0 Q{I|L}N 1.3463 - 27 + NaN NaN 109541.5 NaN 18970 4209 23173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23183 92.23 NaN 3152000 35 0 667130 0.327 + 20239 NYLPFIMEL 9 84 578.2912249331946 1154.567896933189 2 578.291748046875 MULTI HCD FTMS 0 0 0 23182 2030560 1 0 0 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 181.3275282027936 9.859558525874733E-13 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 110.08 0 0 9.534 9.534 97.099 0 0 0 26.15356566548286 16.478174818886373 16.478174818886373 26.15356566548286 0 2.6549471895720984 1.2218487496163564 0 2.146591250700361 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[CA]|SS}{[TV]|[{I|L}S]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}[YV]{M(Oxidation (M))|F}[QP];{[QN]|[E{I|L}]|[KN]}MPY{I|L}{I|L}NY;{[QN]|[E{I|L}]|[KN]}MPY{I|L}[YN]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PY{I|L}{I|L}NY 9.534;7.2688;5.4835;5.0123;4.3798;1.9423;1.5981;1.5129;1.4522;1.2522 +;-;-;-;-;-;-;-;-;- + 1186 NaN NaN 566626.6 NaN 18971 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23184 92.234 NaN 1872500 35 0 257660 0.261 + 616 APFTEGISFVL 11 101 590.8160695977126 1179.6175862622251 2 590.8056030273438 MULTI HCD FTMS 0 0 0 23182 369142.5 0.5256393677924363 4 -0.1083221435546875 2 Unmodified _APFTEGISFVL_ ENSG00000128335|ENST00000358502|APOL2 92.65332237495696 0.011607831232109525 1 {M(Oxidation (M))|F}TETS{I|L}CV{I|L} 9 6 71.561 0 0 6.0664 0 0 168.08947951484532 0 168.08947951484532 0 18.285352555474866 0 0 0 1.5021934810768762 0 1.1747425010840047 0 {M(Oxidation (M))|F}TETS{I|L}CV{I|L} 6.0664 - 17134 NaN NaN 373047.4 NaN 18972 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23185 92.238 NaN 2047200 35 0 465770 0.261 + 10918 IYADYIAPLF 10 76 593.3127964597472 1184.6110399862944 2 593.3128662109375 MULTI HCD FTMS 0 0 0 23182 896197.75 0.6929294842738362 -3 0.0819854736328125 3 Unmodified _IYADYIAPLF_ ENSG00000084073|ENST00000372759|ZMPSTE24 54.773552608820026 0.0604291769046433 1 {I|L}NKC{I|L}A{I|L}P{M(Oxidation (M))|F} 9 6 43.459 0 0 3.6686 0 0 167.0557063147325 0 167.0557063147325 0 16.680344228211013 0 0 0 1.610924374808178 0 0 0.3807196863200844 {I|L}NKC{I|L}A{I|L}P{M(Oxidation (M))|F} 3.6686 - 706 + NaN NaN 388167.4 NaN 18973 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23186 92.241 NaN 533490 35 0 48511 0.261 + 22674 QWPWQASLQF 10 75 645.8165076999982 1289.6184624667962 2 645.81689453125 MULTI HCD FTMS 0 0 0 23182 251176.734375 0.9585760063914167 -3 0.0819854736328125 4 Unmodified _QWPWQASLQF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENST00000476848.5_1_21:43803140-43803371:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 69.33821966488729 0.018369488249132326 1 QAS{I|L}Q{M(Oxidation (M))|F} 6 4 81.631 0 0 6.3299 0 0 597.2673207013687 0 597.2673207013687 0 64.80835659879972 0 0 0 2.4247425010840047 0 0.8494850021680094 0.7742275032520141 + QAS{I|L}Q{M(Oxidation (M))|F} 6.3299 + + 1172 NaN NaN 164289.8 NaN 18974 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23187 92.244 NaN 417540 35 0 63959 0.262 -1 LLVCFYEI 8 60 528.7748397343565 1055.535126535513 2 528.7844848632812 MULTI HCD FTMS 0 0 0 23182 48677.48046875 0.025742853615176114 37 -0.9748764038085938 5 Carbamidomethyl (C) _LLVC(Carbamidomethyl (C))FYEI_ ENSG00000137414|ENST00000259963|FAM8A1 24.67388899826682 0.4122521268485776 1 EY{M(Oxidation (M))|F}{I|L}S 5 -1 39.469 0 0 3.7392 0 0 131.08080238569318 282.1455477350219 413.2263501207151 0 0 0 0 0 0.3807196863200844 0 1.4604093769761874 0 EY{M(Oxidation (M))|F}{I|L}S 3.7392 - 168 + NaN NaN 139571 NaN 18975 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23188 92.248 NaN 336660 35 0 42215 0.261 + 14685 LGYLSHMSSSI 11 62 597.7953129018878 1193.5760728705754 2 597.7952880859375 MULTI HCD FTMS 0 0 0 23182 90838.859375 0.3261736037177938 6 -0.164093017578125 6 Unmodified _LGYLSHMSSSI_ REV__ENSG00000141232|ENST00000499247|TOB1 17.11289562659939 0.30797719109864646 1 S{I|L}[PA]{M(Oxidation (M))|F} 5 -1 34.253 0 0 2.8697 0 0 660.2930704790907 0 660.2930704790907 0 27.26280941356464 0 0 0 1.3807196863200843 0 0.4247425010840047 0 S{I|L}[PA]{M(Oxidation (M))|F} 2.8697 - 74 NaN NaN 136004.9 NaN 18976 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23189 92.251 NaN 206590 35 0 22374 0.261 -1 MLMHWGWF 8 58 562.2473585342933 1122.4801641353865 2 562.7684936523438 MULTI HCD FTMS 0 0 0 23182 4816.806640625 0.0746980010344177 9 -0.24271392822265625 7 Oxidation (M) _MLM(Oxidation (M))HWGWF_ ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL 6.354104778181461 0.5325651638111438 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 7 -1 28.204 0 0 2.5127 0 0 0 161.01533317395493 161.01533317395493 4.48354521061793 0 0 0 0 0 1.5228787452803376 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 2.5127 - 107 NaN NaN 108978.7 NaN 18977 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23190 92.254 NaN 184070 35 0 11840 0.263 -1 0 67 437.2570625673022 1308.7493583021067 3 437.25714111328125 MULTI HCD FTMS 0 0 0 23182 68139.84375 0.1619030512967911 -18 0.47815704345703125 8 NaN NaN 1 P 1 -1 4.6041 0 0 0.35179 0 0 698.3989687530817 510.27173792056874 1208.6707066736503 0 0 0 0 0 0 0 0 0 P 0.35179 - 4 + NaN NaN 108761.1 NaN 18978 4210 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23192 92.259 NaN 634760 35 0 168410 0.327 + 6491 FPIPGEPGFPL 11 69 585.8135101996211 1169.612467466042 2 585.8135986328125 MULTI HCD FTMS 0 0 0 23191 333267.09375 0.5473124917052846 7 -0.1869049072265625 1 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 36.12702656103203 0.16189322891242686 1 M[PG][WP]EP{I|L} 8 6 37.669 0 0 3.2206 0 0 244.17842299629064 0 244.17842299629064 0 20.204715124901398 0 0 0 1.8494850021680094 0 0.3054621874040891 0 M[PG][WP]EP{I|L} 3.2206 - 526 NaN NaN 177471 NaN 18979 4211 23191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23193 92.264 NaN 373530 35 0 29126 0.263 + 7070 FQVKLLYRMR 10 83 451.93240636375714 1352.7753896914714 3 451.9326171875 MULTI HCD FTMS 0 0 0 23191 114680.703125 0.4265543247384323 -7 0.18328094482421875 2 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 1.7422754331352037 0.46608156381052757 1 {M(Oxidation (M))|F} 1 -1 11.594 0 0 0.85704 0 0 1187.696881245962 0 1187.696881245962 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.85704 + + 42 + NaN NaN 128922 NaN 18980 4211 23191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23194 92.267 NaN 215810 35 0 26505 0.261 + 3728 EMNKENEVL 9 63 553.2635587796477 1104.5125646260954 2 553.2636108398438 MULTI HCD FTMS 0 0 0 23191 63078.94140625 0.10435377467300236 11 -0.28157806396484375 3 Unmodified _EMNKENEVL_ ENSG00000166510|ENST00000591504|CCDC68;ENST00000587148.2_1_18:52605184-52610022:-|nuORF 18.1463463914782 0.20357593197100715 1 DEA{I|L} 4 7 33.972 0 0 3.0758 0 0 658.3100207871765 0 658.3100207871765 0 5.35280958067105 0 0 0 0.805462187404089 0 0 0 DEA{I|L} 3.0758 - 423 NaN NaN 112863.2 NaN 18981 4211 23191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23195 92.271 NaN 410410 35 0 58072 0.261 + -1 IYVFMFRCL 9 75 604.3038829914284 1206.5932130496567 2 604.3043212890625 MULTI HCD FTMS 0 0 0 23191 147234.15625 0.8222607780851601 -2 0.05921173095703125 4 Oxidation (M) _IYVFM(Oxidation (M))FRCL_ REV__ENSG00000196689|ENST00000572705|TRPV1;REV__ENST00000574085.5_1_17:3470111-3495610:-|nuORF;REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 21.74664581756881 0.17247014374749275 1 {I|L}YV{M(Oxidation (M))|F}C{I|L}A 7 -1 73.448 0 0 6.0872 0 0 0 394.1744708995476 394.1744708995476 48.750612633917 0 0 0 0 1.774227503252014 2 0 0 {I|L}YV{M(Oxidation (M))|F}C{I|L}A 6.0872 - 1264 + NaN NaN 143035.1 NaN 18982 4211 23191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23196 92.274 NaN 225740 35 0 24088 0.462 + 29230 TYLIVTSLL 9 51 511.8102695887794 1021.6059862443589 2 511.8106994628906 MULTI HCD FTMS 0 0 0 23191 36313.0625 0.35231259162979495 -2 0.05921173095703125 5 Unmodified _TYLIVTSLL_ ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-2|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1 30.636539890814138 0.10832830463492794 1 VTS{I|L}{I|L} 5 4 39.38 0 0 3.8548 0 0 490.27933354645614 0 490.27933354645614 0 25.400990676322905 0 0 0 1.8182503180159344 0 0.3494850021680094 0 + VTS{I|L}{I|L} 3.8548 + + 182 NaN NaN 116517.7 NaN 18983 4211 23191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23197 92.281 NaN 200320 35 0 33262 0.261 + 23837 RRTKAPPG 8 42 441.76739185311203 881.5202307730241 2 441.76751708984375 MULTI HCD FTMS 0 0 0 23191 18262.2265625 0.1864731696701507 -2 0.05921173095703125 6 Unmodified _RRTKAPPG_ REV__ENSG00000184205|ENST00000375442|TSPYL2;REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 1 {I|L} 1 -1 15.044 0 0 1.7066 0 0 155.09394801386264 610.318365957457 765.4123139713197 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.7066 - 8 + NaN NaN 117065.5 NaN 18984 4211 23191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23199 92.286 NaN 127100 35 0 6840.5 0.327 -1 0 68 641.8824831880886 1281.750413442977 2 641.8823852539062 MULTI HCD FTMS 0 0 0 23198 203169.71875 0.10419898394695164 34 -0.8862075805664062 1 NaN NaN 1 D 1 -1 8.4113 0 0 0.65623 0 0 105.08006777005819 1058.5917452447877 1163.6718130148458 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.65623 - 22 + NaN NaN 98678 NaN 18985 4212 23198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23200 92.29 NaN 230370 35 0 34275 0.263 + 18402 MPSILADVF 9 54 496.7595996003174 991.5046462674349 2 496.75982666015625 MULTI HCD FTMS 0 0 0 23198 63266.7421875 0.5598500446911177 6 -0.160675048828125 2 Unmodified _MPSILADVF_ ENSG00000125676|ENST00000245838|THOC2 36.12702656103203 0.08312389501731911 1 ADV{M(Oxidation (M))|F} 4 5 39.457 0 0 3.9795 0 0 541.2928944318375 0 541.2928944318375 0 7.5185720258015465 0 0 0 1.5044321917401078 0 0 0 + ADV{M(Oxidation (M))|F} 3.9795 + + 117 NaN NaN 110926.2 NaN 18986 4212 23198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23201 92.294 NaN 174880 35 0 17041 0.261 + 23807 RRQTRVIQTGR 11 69 457.60797884175486 1369.8021071254645 3 457.60772705078125 MULTI HCD FTMS 0 0 0 23198 54453.796875 0.5189867894547951 -13 0.34391021728515625 3 Unmodified _RRQTRVIQTGR_ UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant 0.4545168274142398 0.41692731010159206 1 E 1 11 6.9897 0 0 0.51027 0 0 556.3852852802879 681.3321627252561 1237.7174480055442 0 0 0 0 0 0 0 0 0 E 0.51027 - 10 + NaN NaN 115990.9 NaN 18987 4212 23198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23202 92.297 NaN 188610 35 0 18934 0.261 + 15344 LPDDFVCYF 9 65 559.7467703739304 NaN 0 559.7651977539062 PEAK HCD FTMS 0 0 0 23198 19832.341796875 0.7378400894346427 7 -0.18688201904296875 4 Unmodified _LPDDFVCYF_ ENSG00000178607|ENST00000433197|ERN1 12.531546534597751 0.23452071659215576 1 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S 7 8 23.448 0 0 2.0983 0 0 165.04634349257213 162.05584131412346 327.1021848066956 0 0 0 0 0 0 0 0.7742275032520141 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S 2.0983 - 185 + NaN NaN 107353.7 NaN 18988 4212 23198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23203 92.3 NaN 92246 35 0 9570.3 0.261 + -1 NYILLMGLCF 10 45 622.3151987077272 1242.6158444822543 2 622.3147583007812 MULTI HCD FTMS 0 0 0 23198 28632.60546875 0.7343525913767147 13 -0.34070587158203125 5 Carbamidomethyl (C) _NYILLMGLC(Carbamidomethyl (C))F_ REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|7|1|sense;REV__SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|14|3|sense;REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense 10.823927491677226 0.4098686510432541 1 [YN]{I|L}[R{M(Oxidation (M))|F}]W 6 -1 38.161 0 0 3.071 0 0 0 360.17691560946054 360.17691560946054 11.73393743112328 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}[R{M(Oxidation (M))|F}]W 3.071 - 85 NaN NaN 105652.3 NaN 18989 4212 23198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23205 92.305 NaN 3304000 35 0 577200 0.327 + 26857 SYIPLFPQL 9 78 539.3024627553938 1076.5903725775875 2 539.3027954101562 MULTI HCD FTMS 0 0 0 23204 1906686.375 1 0 0 1 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 92.65332237495696 0.004456439685314431 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}PQ{I|L} 9 0 + 70.2 0 0 6.5206 6.5206 88.878 0 0 0 7.730012720637376 7.730012720637376 7.730012720637376 9.208187539523749 0 2.6307196863200843 0 0.7059771852360797 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}PQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}P[AG]{I|L};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}PQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}{I|L}PQ{I|L};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}P[AG]{I|L};[Y{I|L}]PS{I|L}{M(Oxidation (M))|F}PQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}{I|L}P[AG]{I|L};[Y{I|L}]SP{M(Oxidation (M))|F}{I|L}PQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}Q[{I|L}P]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}[PA]{I|L}G{M(Oxidation (M))|F} 6.5206;5.6652;5.4969;5.1948;4.6416;4.4732;4.3395;4.1711;4.0704;4.0018 +;-;-;-;-;-;-;-;-;- + 1215 NaN NaN 582829.1 NaN 18990 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23206 92.31 NaN 534910 35 0 131490 0.261 -1 0 83 633.3545017534481 632.347225286848 1 633.3690185546875 MULTI HCD FTMS 0 0 0 23204 106960.7265625 1 0 0 2 NaN NaN 1 {[CA]|SS}K 3 -1 6.5668 0 0 1.0385 0 0 0 327.1449068658813 327.1449068658813 2.046284272644029 0 0 0 0 0 0 0 0 {[CA]|SS}K 1.0385 - 17 + NaN NaN 167250.4 NaN 18991 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23207 92.313 NaN 343150 35 0 38086 0.261 -1 MTREAIDEF 9 56 564.2554328537723 NaN 0 564.2742919921875 PEAK HCD FTMS 0 0 0 23204 23039.05078125 0.22089585185993055 12 -0.32111358642578125 3 Oxidation (M) _M(Oxidation (M))TREAIDEF_ ENSG00000166377|ENST00000426216|ATP9B;ENST00000490210.6_1_18:76873315-76936839:+|nuORF;ENST00000590271.5_1_18:76847676-76954399:+|nuORF;ENST00000590608.1_1_18:76886275-76903905:+|nuORF;nc|ENSG00000166377|O43861-2|ATP9B 11.640296217721598 0.23883959125015683 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 -1 10.406 0 0 0.92376 0 0 147.021239977589 567.2932775216138 714.3145174992028 0 0 0 0 0 0 0 0.5 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 0.92376 - 56 + NaN NaN 128576.8 NaN 18992 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23208 92.316 NaN 147030 35 0 7246.4 0.263 -1 0 53 422.58167378528765 1264.723191956063 3 422.58184814453125 MULTI HCD FTMS 0 0 0 23204 108387.0703125 0.2513225208087887 36 -0.9518356323242188 4 NaN NaN 1 GDK 3 -1 6.4267 0 0 0.50815 0 0 634.3773800437567 327.14426599674067 961.5216460404974 0 0 0 0 0 0 0 0 0 GDK 0.50815 - 9 + NaN NaN 103118.2 NaN 18993 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23209 92.32 NaN 237320 35 0 33763 0.261 + 4385 EYAAGPFALF 10 53 543.2682565649573 1084.5219601967144 2 543.2684936523438 MULTI HCD FTMS 0 0 0 23204 113658.3359375 1 0 0 5 Unmodified _EYAAGPFALF_ ENSG00000198888|ENST00000361390|MT-ND1 74.42276476219924 0.012344753082416305 1 A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L}{M(Oxidation (M))|F} 6 7 39.213 0 0 3.6157 0 0 363.14310211849016 0 363.14310211849016 0 33.72872192056825 0 0 0 1.3807196863200843 0 0 0 A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L}{M(Oxidation (M))|F} 3.6157 - 56 + NaN NaN 115943 NaN 18994 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23210 92.323 NaN 257170 35 0 49636 0.263 -1 LYIHCYAHF 9 49 408.52675388906164 NaN 0 408.52667236328125 PEAK HCD FTMS 0 0 0 23204 77575.96875 1 0 0 6 Carbamidomethyl (C) _LYIHC(Carbamidomethyl (C))YAHF_ ENSG00000197056|ENST00000359858|ZMYM1 13.90604991867851 0.22786006501039813 1 {I|L} 1 -1 4.6041 0 0 0.56489 0 0 425.8772859990233 273.054675915115 698.9319619141384 0 0 0 0 0 0 0 0 0 {I|L} 0.56489 + + 9 + NaN NaN 126629.4 NaN 18995 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23211 92.326 NaN 135850 35 0 19204 0.261 + 6845 FPTDFLEEI 9 44 555.7711400502094 1109.5277271672187 2 555.7713012695312 MULTI HCD FTMS 0 0 0 23204 50679.75390625 0.8248440227337243 1 -0.03289794921875 7 Unmodified _FPTDFLEEI_ ENSG00000185482|ENST00000332782|STAC3;nc|ENSG00000185482|Q96MF2-2|STAC3;nc|ENSG00000185482|Q96MF2-3|STAC3 25.399314129420986 0.14091189997036632 1 DEE{I|L} 4 5 38.8 0 0 3.497 0 0 605.3077870099625 0 605.3077870099625 0 29.847594070116017 0 0 0 0.9247425010840047 0 0 0 DEE{I|L} 3.497 - 48 NaN NaN 95052.3 NaN 18996 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23212 92.33 NaN 159320 35 0 17754 0.261 + 21175 PPTLSLALSL 10 57 506.3073149267779 1010.6000769203558 2 506.3070373535156 MULTI HCD FTMS 0 0 0 23204 65179.35546875 0.6916928287843845 -3 0.0754241943359375 8 Unmodified _PPTLSLALSL_ ENST00000505912.1_1_4:113332098-113335446:+|nuORF 18.1463463914782 0.3413772152514074 1 {I|L}S{I|L} 3 7 36.995 0 0 3.6607 0 0 679.3921986310562 0 679.3921986310562 0 10.796896906561031 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + {I|L}S{I|L} 3.6607 + + 32 NaN NaN 113795.6 NaN 18997 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23213 92.333 NaN 50409 35 0 5198.1 0.261 + 10380 IMLLNPQK 8 37 478.785527430656 NaN 0 478.7857971191406 PEAK HCD FTMS 0 0 0 23204 22178.421875 0.812687465190787 1 -0.03289794921875 9 Unmodified _IMLLNPQK_ REV__ENSG00000171467|ENST00000361428|ZNF318 9.347437153973935 0.38822285293237185 1 C 1 -1 5.4846 0 0 0.57396 0 0 495.34917878533696 354.1808260553344 849.5300048406714 0 0 0 0 0 0 0 0 0 C 0.57396 - 3 + NaN NaN 95016.1 NaN 18998 4213 23204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23215 92.338 NaN 2321100 35 0 549450 0.327 + 10495 IPEDLPFVL 9 59 521.7943880903734 1041.5742232475468 2 521.7947387695312 MULTI HCD FTMS 0 0 0 23214 1872085.375 0.8028911232575736 1 -0.02950286865234375 1 Unmodified _IPEDLPFVL_ ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant 36.04419817259434 0.08350412372117409 1 P{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.4342 0 0 567.2901500938717 0 567.2901500938717 0 28.07651258738964 0 0 0 1.4247425010840047 0 0 0 + P{M(Oxidation (M))|F}V{I|L} 4.4342 + + 215 NaN NaN 436269.5 NaN 18999 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23216 92.342 NaN 641060 35 0 177190 0.261 + 10560 IPIMYEDAI 9 73 532.7703529432426 1063.5261529532852 2 532.7858276367188 MULTI HCD FTMS 0 0 0 23214 54292.85546875 0.6014798972267387 -12 0.307861328125 2 Unmodified _IPIMYEDAI_ REV__ENSG00000168702|ENST00000389484|LRP1B;REV__LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;REV__LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 12.531546534597751 0.2520865569484384 1 PED{I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 52.346 0 0 4.9219 0 0 113.0543638609483 0 113.0543638609483 0 19.93283102253094 0 0 0 0.3252574989159953 0 0.4247425010840047 0 PED{I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9219 - 439 + NaN NaN 177803 NaN 19000 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23217 92.346 NaN 422510 35 0 69592 0.261 -1 0 81 589.2822218631994 1176.5498907931988 2 589.2828369140625 MULTI HCD FTMS 0 0 0 23214 170614.734375 0.6446113096420881 1 -0.02950286865234375 3 NaN NaN 1 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E 8 -1 53.263 0 0 4.527 0 0 0 128.07512209167376 128.07512209167376 34.31031895404267 0 0 0 0 1.7059771852360797 1.6989700043360187 0 0.3807196863200844 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E 4.527 - 507 NaN NaN 155370.7 NaN 19001 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23218 92.349 NaN 318510 35 0 47038 0.261 + -1 LYPLPYLGDM 10 52 599.296611795808 NaN 0 599.31298828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _LYPLPYLGDM(Oxidation (M))_ REV__ENSG00000112659|ENST00000252050|CUL9;REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF 10.823927491677226 0.33092050725491123 1 VADV[NS]{I|L}G 8 -1 25.443 0 0 2.1263 0 0 165.0444495573841 273.1241549127563 438.1686044701404 0 0 0 0 0 0.6237125054200234 0 0.4247425010840047 0 VADV[NS]{I|L}G 2.1263 - 166 + NaN NaN 136382.3 NaN 19002 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23219 92.353 NaN 219870 35 0 56736 0.261 -1 FECCLHYIGP 10 51 619.7689412742701 1237.5233296153401 2 619.76904296875 MULTI HCD FTMS 0 0 0 23214 70198.390625 0.6025439584657871 1 -0.02950286865234375 5 Carbamidomethyl (C) _FEC(Carbamidomethyl (C))CLHYIGP_ ENST00000262225.7_1_12:124081454-124081643:+|nuORF 3.944395688203298 0.4544253912184634 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 -1 16.938 0 0 1.3687 0 0 130.0162017850651 582.2703341119749 712.28653589704 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 1.3687 - 14 + NaN NaN 115631.6 NaN 19003 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23220 92.356 NaN 349580 35 0 35200 0.262 + 10091 IFFSIDVLA 9 71 512.7890393481189 1023.5635257630378 2 512.8070068359375 MULTI HCD FTMS 0 0 0 23214 16290.40234375 0.4227128982613738 8 -0.20285797119140625 6 Unmodified _IFFSIDVLA_ REV__ABCA6|p.V1066I|1|0.23|ENSG00000154262|chr17:69096726-69096726|C/T|missense_variant 12.531546534597751 0.2520865569484384 1 MAV{I|L}D 5 -1 27.423 0 0 2.6791 0 0 0 491.2662752740844 491.2662752740844 4.983105537896009 0 0 0 0 0 0 0 0 MAV{I|L}D 2.6791 - 185 + NaN NaN 130330.7 NaN 19004 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23221 92.359 NaN 131630 35 0 20107 0.261 + 25066 SAATIVALH 9 35 441.75427861158374 NaN 0 441.7677001953125 PEAK HCD FTMS 0 0 0 23214 9061.19140625 1 0 0 7 Unmodified _SAATIVALH_ REV__ENST00000465323.1_1_11:3143079-3150378:-|nuORF;REV__ENST00000477622.1_1_11:3143079-3147843:-|nuORF 4.3292370932331545 0.2742679634796037 1 {I|L} 1 -1 6.9897 0 0 0.79294 0 0 155.06738219222444 610.3188666895891 765.3862488818136 0 0 0 0 0 0 0 0 0 {I|L} 0.79294 + + 6 + NaN NaN 117958.6 NaN 19005 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23222 92.363 NaN 189560 35 0 43311 0.261 + -1 LFCMWVLF 8 59 558.2757302722059 1114.5369076112117 2 558.2756958007812 MULTI HCD FTMS 0 0 0 23214 51317.015625 0.9970870255297394 1 -0.02950286865234375 8 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))MWVLF_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|103 11.114462752807354 0.5120171699125776 1 YV{I|L}{M(Oxidation (M))|F} 4 -1 31.938 0 0 2.8656 0 0 574.242243159843 0 574.242243159843 0 24.948500216800937 0 0 0 0 0 0 0 YV{I|L}{M(Oxidation (M))|F} 2.8656 - 74 + NaN NaN 123631.6 NaN 19006 4214 23214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23224 92.368 NaN 2318300 35 0 484370 0.327 + 20240 NYLPFIMEL 9 80 578.2912249331946 1154.567896933189 2 578.2916870117188 MULTI HCD FTMS 0 0 0 23223 1169029 0.5757175360491688 5 -0.137664794921875 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 166.44778350782605 5.759113011535275E-09 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 109.74 0 0 9.505 9.505 97.118 0 0 0 22.98791285000749 16.478174818886373 16.478174818886373 26.465912507003594 0 2.6237125054200234 1.2218487496163564 0 2.1443525400371293 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}M{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}MPY{I|L}[YN]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}[YV]{M(Oxidation (M))|F}[QP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PY{I|L}[YN]{I|L};{[QN]|[E{I|L}]|[KN]}MPY{I|L}{I|L}[YN] 9.505;7.2128;6.1816;5.2895;5.0287;4.4108;1.5438;1.3581;1.1837;0.65445 +;-;-;-;-;-;-;-;-;- + 1040 NaN NaN 434664.4 NaN 19007 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23225 92.372 NaN 308090 35 0 50565 0.261 + 33948 YLSELHPQL 9 66 550.2937097489834 1098.5728665647666 2 550.2938842773438 MULTI HCD FTMS 0 0 0 23223 107983.9140625 0.3998623937504788 2 -0.05246734619140625 2 Unmodified _YLSELHPQL_ ENST00000278426.7_2_11:57263521-57268513:-|nuORF;ENST00000533515.5_1_11:57263521-57267149:-|nuORF 18.1463463914782 0.20357593197100715 1 {I|L}YS[{I|L}P]{M(Oxidation (M))|F}K 7 6 29.67 0 0 2.7008 0 0 0 247.0721842958151 247.0721842958151 5.75720713938118 0 0 0 0 1.9419628234359578 0 0.3807196863200844 0 {I|L}YS[{I|L}P]{M(Oxidation (M))|F}K 2.7008 - 175 + NaN NaN 133672.3 NaN 19008 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23226 92.375 NaN 304510 35 0 83352 0.263 -1 0 39 405.1186809059501 808.2228088787002 2 405.1189880371094 MULTI HCD FTMS 0 0 0 23223 74333.921875 0.2991752224505917 2 -0.05246734619140625 3 NaN NaN 1 Q 1 -1 0.71334 0 0 0.08826 0 0 494.1137894082986 183.02828394107658 677.1420733493752 0 0 0 0 0 0 0 0 0 Q 0.08826 - 6 + NaN NaN 130645.6 NaN 19009 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23227 92.379 NaN 228030 35 0 42849 0.261 -1 FPVNQLFDML 10 46 620.3076264800765 1238.6007000269528 2 620.307861328125 MULTI HCD FTMS 0 0 0 23223 45137.390625 0.10693136661268016 19 -0.4980926513671875 4 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 27.223235318498237 0.2564750587861972 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 5 -1 47.691 0 0 3.8504 0 0 585.2895985334 0 585.2895985334 0 37.23320034371433 0 0 0 1.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.8504 + + 30 NaN NaN 111198.1 NaN 19010 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23228 92.382 NaN 119920 35 0 15142 0.263 + 33040 YCWAAVQQ 8 49 484.71827168777475 967.4219904423495 2 484.71826171875 MULTI HCD FTMS 0 0 0 23223 15325.0966796875 0.08332067029391334 9 -0.225860595703125 5 Unmodified _YCWAAVQQ_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 0.7936320650641473 0.540814922690045 1 C(Carbamidomethyl (C)) 1 7 5.4846 0 0 0.56692 0 0 511.3231572898089 293.0400061464111 804.36316343622 0 0 0 0 0 0 0 0 0 + C(Carbamidomethyl (C)) 0.56692 + + 2 + NaN NaN 88556.6 NaN 19011 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23229 92.386 NaN 41481 35 0 5217.4 0.261 + 18019 MLLGFLVF 8 38 470.27272389417027 938.5308948551406 2 470.27239990234375 MULTI HCD FTMS 0 0 0 23223 25288.326171875 0.5625086129579552 1 -0.02626800537109375 6 Unmodified _MLLGFLVF_ ENST00000377126.3_1_9:73002336-73002447:-|nuORF 2.8892196856762586 0.5377058178582064 1 V 1 7 3.9794 0 0 0.424 0 0 623.3367858236937 213.10315881900627 836.4399446427 0 0 0 0 0 0 0 0 0 + V 0.424 + + 3 + NaN NaN 86673.8 NaN 19012 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23230 92.389 NaN 124370 35 0 15948 0.261 + 8102 GLAGWWRF 8 46 496.7595996003174 991.5046462674349 2 496.7595520019531 MULTI HCD FTMS 0 0 0 23223 14825.318359375 0.13118986151457018 9 -0.225860595703125 7 Unmodified _GLAGWWRF_ ENST00000263563.6_1_10:72327056-72327413:+|nuORF 10.183394434864962 0.5188676124868831 1 V{I|L}QN 4 7 29.553 0 0 2.9806 0 0 519.2483998029312 0 519.2483998029312 0 7.562893943202624 0 0 0 0 0 0 0 V{I|L}QN 2.9806 - 50 NaN NaN 100531.3 NaN 19013 4215 23223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23232 92.394 NaN 1572500 35 0 309390 0.327 + 10919 IYADYIAPLF 10 71 593.3127964597472 1184.6110399862944 2 593.3131103515625 MULTI HCD FTMS 0 0 0 23231 637563.3125 0.4929564008864602 3 -0.07862091064453125 1 Unmodified _IYADYIAPLF_ ENSG00000084073|ENST00000372759|ZMPSTE24 61.357469665136826 0.03648492562855298 1 [{I|L}P][HD]Y{I|L}AV 8 5 51.916 0 0 4.3826 0 0 0 273.11876638693815 273.11876638693815 15.868193983395635 0 0 0 0 1.774227503252014 1.6989700043360187 0.6549471895720984 0 [{I|L}P][HD]Y{I|L}AV 4.3826 - 537 NaN NaN 314085.2 NaN 19014 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23233 92.398 NaN 397820 35 0 91313 0.261 + -1 YNILKEMIM 9 63 585.7991880580075 NaN 0 585.8133544921875 PEAK HCD FTMS 0 0 0 23231 32953.203125 1 0 0 2 Oxidation (M) _YNILKEM(Oxidation (M))IM_ REV__ENST00000536441.6_2_11:94908753-94910907:-|nuORF 12.240655878213236 0.2359303321180293 1 PE 2 -1 9.464 0 0 0.80917 0 0 131.06868570042758 809.3836967400458 940.4523824404735 0 0 0 0 0 0 0 0 0 PE 0.80917 - 190 + NaN NaN 148906.4 NaN 19015 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23234 92.402 NaN 373630 35 0 22703 0.264 -1 0 77 437.2570625673022 1308.7493583021067 3 437.2572021484375 MULTI HCD FTMS 0 0 0 23231 163011.375 0.38732168370411696 -12 0.31777191162109375 3 NaN NaN 1 V 1 -1 6.4659 0 0 0.49405 0 0 938.529565028694 268.12409387760005 1206.6536589062941 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.49405 - 12 + NaN NaN 136483 NaN 19016 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23235 92.405 NaN 527820 35 0 75697 0.261 + 17868 MIGSEFFLL 9 66 528.7748397343565 1055.535126535513 2 528.7844848632812 MULTI HCD FTMS 0 0 0 23231 32400.865234375 0.01713504320070622 43 -1.1021347045898438 4 Unmodified _MIGSEFFLL_ ENSG00000279301|ENST00000641193|OR2T11 30.224811164608877 0.11021837014094292 1 EY{M(Oxidation (M))|F}{I|L}S 5 6 38.844 0 0 3.6801 0 0 131.07775863351986 282.14548669986567 413.22324533338553 0 0 0 0 0 0 0 1.841129063296272 0 EY{M(Oxidation (M))|F}{I|L}S 3.6801 - 321 + NaN NaN 163790.3 NaN 19017 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23236 92.408 NaN 365470 35 0 43347 0.261 + 3946 EQELIYFTF 9 51 595.2921762133268 1188.5697994934535 2 596.2958374023438 MULTI HCD FTMS 0 0 0 23231 73870.8359375 0.7830263671002401 -1 0.02626800537109375 5 Unmodified _EQELIYFTF_ ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5 21.536976647645854 0.1742816388551942 1 T{M(Oxidation (M))|F}{[TV]|[{I|L}S]}Y{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 8 4 38.237 0 0 3.2171 0 0 164.07039529033938 0 164.07039529033938 0 30.406075122407685 0 0 0 1.1549471895720984 0 0.7302046884880937 0 T{M(Oxidation (M))|F}{[TV]|[{I|L}S]}Y{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 3.2171 - 88 + NaN NaN 143511.1 NaN 19018 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23237 92.412 NaN 105210 35 0 18088 0.261 -1 0 59 575.3453608058733 1148.6761686785464 2 575.3448486328125 MULTI HCD FTMS 0 0 0 23231 64493.44921875 0.1747824884542069 -8 0.209930419921875 6 NaN NaN 1 {I|L}AY 3 -1 6.6555 0 0 0.5794 0 0 165.24819290892384 633.2155855768186 798.4637784857425 0 0 0 0 0 0 0 0 0 {I|L}AY 0.5794 - 16 + NaN NaN 99157.5 NaN 19019 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23238 92.415 NaN 129750 35 0 12062 0.261 -1 NPFVAWMHF 9 57 582.7708724360285 NaN 0 582.7717895507812 PEAK HCD FTMS 0 0 0 23231 73587.9296875 0.41567645175229867 -4 0.1082611083984375 7 Oxidation (M) _NPFVAWM(Oxidation (M))HF_ ENSG00000148344|ENST00000340607|PTGES 24.67388899826682 0.15602608049614122 1 P{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L} 6 -1 35.271 0 0 3.0314 0 0 114.04590992879419 285.0850924127563 399.13100234155047 0 0 0 0 0 1.1421590589602533 0 0 0.3494850021680094 P{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L} 3.0314 - 82 + NaN NaN 99240.9 NaN 19020 4216 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23240 92.42 NaN 1479100 35 0 205140 0.327 + 19397 NPFQFEITF 9 93 571.7799461961537 1141.5453394591073 2 571.7797241210938 MULTI HCD FTMS 0 0 0 23239 943736.875 0.7674818792975135 -3 0.08197021484375 1 Unmodified _NPFQFEITF_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 96.36657018975838 0.004359138328518304 1 PEQ{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 8 2 77.146 0 0 6.7581 0 0 132.05321821967783 0 132.05321821967783 0 54.2491025745376 0 0 0 2.6861818737241734 0 1.666386562212267 0 PEQ{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 6.7581 - 664 + NaN NaN 307182.3 NaN 19021 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23241 92.424 NaN 328960 35 0 18813 0.263 + 16543 LTRRLPCWVPL 11 76 451.93240636375714 1352.7753896914714 3 451.9326171875 MULTI HCD FTMS 0 0 0 23239 257075.40625 0.956190739433321 -1 0.0261993408203125 2 Unmodified _LTRRLPCWVPL_ ENST00000492155.5_1_10:13749216-13749624:-|nuORF 1.3296431237094175 0.4130893034510334 1 N{[HG]|PP}N 4 9 17.167 0 0 1.269 0 0 912.5220204084 0 912.5220204084 0 7.562893943202624 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.269 - 29 NaN NaN 132409.1 NaN 19022 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23242 92.428 NaN 474340 35 0 86426 0.261 -1 MPPWENIWL 9 64 601.2890127635567 1200.5634725939133 2 601.2891845703125 MULTI HCD FTMS 0 0 0 23239 185614.765625 0.4413267891512625 -8 0.21990203857421875 3 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.13340543277302316 1 EN{I|L}W{I|L} 5 -1 48.984 0 0 4.0801 0 0 527.2208729474625 0 527.2208729474625 0 39.2478773067036 0 0 0 1.4247425010840047 0 0.3054621874040891 0 EN{I|L}W{I|L} 4.0801 + + 169 NaN NaN 148603.4 NaN 19023 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23243 92.431 NaN 77108 35 0 4772.9 0.261 -1 0 55 641.8824831880886 1281.750413442977 2 641.8828735351562 MULTI HCD FTMS 0 0 0 23239 111717.078125 0.057295969604954804 39 -1.0039749145507812 4 NaN NaN 1 A 1 -1 5.4846 0 0 0.4279 0 0 149.1036371752021 1058.5930880182252 1207.6967251934273 0 0 0 0 0 0 0 0 0 A 0.4279 - 8 + NaN NaN 99871.5 NaN 19024 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23244 92.435 NaN 360630 35 0 116460 0.263 + 15401 LPDIALDVF 9 41 501.7790405302811 1001.5435281273623 2 501.7791748046875 MULTI HCD FTMS 0 0 0 23239 206951.75 0.26710924209361475 -8 0.21990203857421875 5 Unmodified _LPDIALDVF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 37.97399986684836 0.07464525285885698 1 A{I|L}DV{M(Oxidation (M))|F} 5 4 57.959 0 0 5.7869 0 0 438.24754531074376 0 438.24754531074376 0 31.928031367991565 0 0 0 2 0 0 0 + A{I|L}DV{M(Oxidation (M))|F} 5.7869 + + 46 NaN NaN 132805.7 NaN 19025 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23245 92.438 NaN 260870 35 0 32567 0.261 + 16656 LWGGRLPSF 9 54 516.7837966385591 NaN 0 516.7938842773438 PEAK HCD FTMS 0 0 0 23239 11089.3671875 1 0 0 6 Unmodified _LWGGRLPSF_ REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF 14.838274106304384 0.2220448417561729 1 SP{I|L}{M(Oxidation (M))|F} 4 -1 11.146 0 0 1.0805 0 0 165.06410099020565 419.2660311334594 584.3301321236651 0 0 0 0 0 0 0 0 0 SP{I|L}{M(Oxidation (M))|F} 1.0805 - 28 + NaN NaN 120233.6 NaN 19026 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23246 92.441 NaN 82297 35 0 8044.2 0.261 + 28923 TWSPWTLSL 9 54 545.7820212636442 NaN 0 545.7822265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TWSPWTLSL_ ENST00000367137.3_1_1:205759622-205759775:-|nuORF 10.073929032068715 0.24642998803896465 1 S{I|L} 2 7 17.519 0 0 1.6079 0 0 131.0871615685008 755.3198155717215 886.4069771402224 0 0 0 0 0 0.805462187404089 0 0 0 + S{I|L} 1.6079 + + 6 + NaN NaN 96554.5 NaN 19027 4217 23239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23248 92.446 NaN 1142600 35 0 190880 0.327 + 26858 SYIPLFPQL 9 67 539.3024627553938 1076.5903725775875 2 539.302734375 MULTI HCD FTMS 0 0 0 23247 448609.65625 0.23528235274141507 5 -0.1208648681640625 1 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 53.832793166522166 0.026208976789938845 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 46.673 0 0 4.3352 4.3352 80.474 0 0 0 0.4406804435027567 2.671882547412636 0.4406804435027567 0.4406804435027567 0 2.274227503252014 0 0.3807196863200844 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]V[TP]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]SP{I|L}[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]V[TP][{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4.3352;4.2943;3.4116;1.7755;1.7346;0.85187 +;-;-;-;-;- + 301 NaN NaN 255092 NaN 19028 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23249 92.451 NaN 745760 35 0 121890 0.261 + -1 YLILMCTIF 9 72 595.3039921606409 1188.5934313880816 2 595.2924194335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _YLILM(Oxidation (M))C(Carbamidomethyl (C))TIF_ REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF 21.74664581756881 0.17247014374749275 1 [Y{I|L}]HY[KA]{M(Oxidation (M))|F}T 8 -1 31.688 0 0 2.666 0 0 0 162.07235191992405 162.07235191992405 -1.7558281444720336 0 -1.7558281444720336 0 0 0.3807196863200844 1.3010299956639813 0 0 [Y{I|L}]HY[KA]{M(Oxidation (M))|F}T 2.666 - 283 NaN NaN 191904 NaN 19029 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23250 92.454 NaN 980180 35 0 320440 0.261 -1 0 75 633.3545017534481 632.347225286848 1 633.3692016601562 MULTI HCD FTMS 0 0 0 23247 30677.75390625 0.28681325279072567 5 -0.1208648681640625 3 NaN NaN 1 D 1 -1 6.0257 0 0 0.95291 0 0 53.98438456594801 460.30701263022854 514.2913971961766 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.95291 - 8 + NaN NaN 233029.9 NaN 19030 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23251 92.457 NaN 563460 35 0 90933 0.261 + 28936 TWYPVSIPAF 10 66 590.8052199146704 1179.5958868961407 2 590.8056640625 MULTI HCD FTMS 0 0 0 23247 155831.625 0.10234780782548972 17 -0.43567657470703125 4 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 45.69961567697781 0.09594615698576985 1 [YN]{I|L}QQS{I|L}CV{I|L} 10 8 + 82.893 0 0 7.0272 7.0272 94.069 0 0 0 20.152405929883983 55.44531259372398 20.152405929883983 35.779550148593486 0 1.5 1.5228787452803376 0.4247425010840047 0 [YN]{I|L}QQS{I|L}CV{I|L};{[WT]|[RM]}Y[VP]S{I|L}[PA]{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S{I|L}[DV]T;{[WT]|[RM]}Y[VP]S[PA]{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}Y[VP]S[PA]{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP][TP]G{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}Y[VP][TP]G{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}[RN]{[SA]|[TG]}W{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}Y[HK][KG]N{M(Oxidation (M))|F};{[WT]|[RM]}[RN]{[WT]|[RM]}G{M(Oxidation (M))|F}{I|L} 7.0272;3.994;3.8059;3.3593;2.9549;2.3429;1.9384;1.044;0.89367;0.85592 -;+;-;-;-;-;-;-;-;- + 355 NaN NaN 176237.7 NaN 19031 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23252 92.461 NaN 246180 35 0 14674 0.263 + 22160 QKRERRQKKN 10 72 457.60797884175486 1369.8021071254645 3 457.94287109375 MULTI HCD FTMS 0 0 0 23247 44012.3515625 0.4232836072095804 1 -0.02620697021484375 5 Unmodified _QKRERRQKKN_ REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense 0.776531954647913 0.4711933975711956 1 P 1 -1 1.9897 0 0 0.14525 0 0 847.5047571272208 422.2161959283813 1269.7209530556022 0 0 0 0 0 0 0 0 0 P 0.14525 - 11 + NaN NaN 117858.2 NaN 19032 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23253 92.464 NaN 312220 35 0 104280 0.261 + 30407 VLPDMFFSF 9 59 559.7651260745367 1117.5156992158734 2 559.7650146484375 MULTI HCD FTMS 0 0 0 23247 37591.05859375 0.46011840003886234 1 -0.02620697021484375 6 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 71.13359017698441 0.008721403657255008 1 [{I|L}V][DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 59.842 0 0 5.3549 5.3549 91.587 0 0 0 37.490823894397565 13.651115129814855 13.651115129814855 47.96983721748951 0 2.218765315847925 1.3010299956639813 1.2302046884880937 0 + + [{I|L}V][DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}R{M(Oxidation (M))|F}[WH]{[ET]|[MV]};{[QD]|[EN]|[WG]|[KD]|[RS]}[VG]{M(Oxidation (M))|F}[WH]{[ET]|[MV]} 5.3549;1.0624;0.23354 +;-;- + 135 + NaN NaN 132061.5 NaN 19033 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23254 92.467 NaN 109280 35 0 20259 0.261 + 23732 RRARRSPPSR 10 38 619.8695587769541 1237.7245646207082 2 619.8699340820312 MULTI HCD FTMS 0 0 0 23247 45345.1640625 0.8363528659250294 -7 0.1869049072265625 7 Unmodified _RRARRSPPSR_ ENST00000418115.5_1_3:49449357-49449522:-|nuORF 1.1933415558491238 0.46898715808974617 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 10 11.682 0 0 0.94386 0 0 130.22024440762067 695.3552340143186 825.5754784219394 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 0.94386 - 8 + NaN NaN 92762.1 NaN 19034 4218 23247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23256 92.472 NaN 1390400 35 0 313140 0.327 + 10496 IPEDLPFVL 9 54 521.7943880903734 1041.5742232475468 2 521.794677734375 MULTI HCD FTMS 0 0 0 23255 800577.4375 0.3433478657719042 6 -0.1538238525390625 1 Unmodified _IPEDLPFVL_ ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant 28.486842064014134 0.11819662193267319 1 P{M(Oxidation (M))|F}V{I|L} 4 5 44.993 0 0 4.3197 0 0 567.2901500345058 0 567.2901500345058 0 34.02372200412145 0 0 0 1.305462187404089 0 0 0 + P{M(Oxidation (M))|F}V{I|L} 4.3197 + + 220 NaN NaN 300991.4 NaN 19035 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23257 92.477 NaN 696810 35 0 90802 0.261 + 11444 IYQEVWNLF 9 87 606.3083799907627 1210.6022070483252 2 606.3087158203125 MULTI HCD FTMS 0 0 0 23255 167694.25 0.1999422478550667 -6 0.16728973388671875 2 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 80.6760300276096 0.005633624786464751 1 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F} 10 2 + 88.237 0 0 7.2887 7.2887 85.925 0 0 0 13.821909710751612 13.821909710751612 13.821909710751612 1.0475750727131583 0 2.805462187404089 1.3010299956639813 0 0.3807196863200844 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]G{I|L}{[DA]|[EG]}WN{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]G{I|L}{[DA]|[EG]}WGG{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]G{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F} 7.2887;7.2022;6.4415;6.2172;5.8205;5.3863;4.749;4.5749;4.3606;4.3338 -;+;-;-;-;-;-;-;-;- + 1432 NaN NaN 186696.9 NaN 19036 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23258 92.48 NaN 143090 35 0 22232 0.261 + 26409 STCAWNAFPV 10 46 548.2501327761121 1094.485712619024 2 548.2501831054688 MULTI HCD FTMS 0 0 0 23255 18439.86328125 0.16675241069415714 6 -0.1538238525390625 3 Unmodified _STCAWNAFPV_ ENST00000503862.5_3_4:108746377-108829880:+|nuORF 3.2813086475875832 0.45793521633868084 1 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.3343 0 0 929.4071126207804 0 929.4071126207804 0 10 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3343 + + 12 + NaN NaN 99958.1 NaN 19037 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23259 92.484 NaN 146610 35 0 17479 0.261 + 33949 YLSELHPQL 9 53 550.2937097489834 1098.5728665647666 2 550.2945556640625 MULTI HCD FTMS 0 0 0 23255 38420.30859375 0.1422696768894403 6 -0.1538238525390625 4 Unmodified _YLSELHPQL_ ENST00000278426.7_2_11:57263521-57268513:-|nuORF;ENST00000533515.5_1_11:57263521-57267149:-|nuORF 18.1463463914782 0.20357593197100715 1 [Y{I|L}]S 3 6 21.655 0 0 1.9712 0 0 0 732.3704184048635 732.3704184048635 -0.6119790752951815 0 -0.6119790752951815 0 0 0.5 1.3979400086720375 0 0 + [Y{I|L}]S 1.9712 + + 49 NaN NaN 102938.1 NaN 19038 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23260 92.487 NaN 126170 35 0 12057 0.261 + 10726 IQPDLLISL 9 42 506.3073149267779 1010.6000769203558 2 506.30712890625 MULTI HCD FTMS 0 0 0 23255 38662.234375 0.4102892713443624 3 -0.0684661865234375 5 Unmodified _IQPDLLISL_ ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE 16.149105407346934 0.22083165093524068 1 {I|L}{I|L}S{I|L} 4 5 34.412 0 0 3.4052 0 0 566.3084583966812 0 566.3084583966812 0 16.18562527100117 0 0 0 0.5 0 0.3494850021680094 0 + {I|L}{I|L}S{I|L} 3.4052 + + 17 NaN NaN 101179.8 NaN 19039 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23261 92.49 NaN 73193 35 0 6914 0.261 -1 DPSAPQPR 8 45 455.2253708018938 NaN 0 455.224853515625 PEAK HCD FTMS 0 0 0 23255 31626.953125 0.6325975283496904 -2 0.05242156982421875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DPSAPQPR_ ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.C634Vfs*9|1|0.07|ENSG00000182150|chr9:95955933-95955933|T/-|frameshift_variant;ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2 2.577480529830294 0.38822285293237185 1 D 1 -1 3.0989 0 0 0.34113 0 0 567.3140400883595 223.07283960513908 790.3868796934986 0 0 0 0 0 0 0 0 0 D 0.34113 + + 3 + NaN NaN 91060.8 NaN 19040 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23262 92.494 NaN 199970 35 0 23061 0.261 + 15921 LPMFWALF 8 62 512.769801362275 1023.5250497913499 2 512.77001953125 MULTI HCD FTMS 0 0 0 23255 40840.9453125 0.3399645939108082 -6 0.16728973388671875 7 Unmodified _LPMFWALF_ ENSG00000088386|ENST00000376503|SLC15A1 24.20995872069341 0.415665547393293 1 {I|L}PD 3 6 46.387 0 0 4.5321 0 0 0 695.3399141900999 695.3399141900999 21.92323921596858 0 0 0 0 0.6694451763165201 1.6989700043360187 0 0 {I|L}PD 4.5321 - 167 + NaN NaN 107180.8 NaN 19041 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23263 92.497 NaN 36279 35 0 5987.3 0.261 -1 0 23 480.2809322442964 958.5473115553929 2 480.28125 MULTI HCD FTMS 0 0 0 23255 8200.638671875 0.017834864968848167 18 -0.4719390869140625 8 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86294 NaN 19042 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23264 92.5 NaN 100530 35 0 9961.5 0.261 + 20078 NYIPRFWTF 9 43 622.3163007875391 1242.6180486418782 2 622.8162841796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4045226011157 849.4045226011157 15.218618560633814 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 163 NaN NaN 92952.5 NaN 19043 4219 23255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23266 92.505 NaN 411380 35 0 88987 0.327 + 10561 IPIMYEDAI 9 69 532.7703529432426 1063.5261529532852 2 532.7855224609375 MULTI HCD FTMS 0 0 0 23265 74116.3671875 0.8210933931153409 -6 0.16716766357421875 1 Unmodified _IPIMYEDAI_ REV__ENSG00000168702|ENST00000389484|LRP1B;REV__LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;REV__LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 12.531546534597751 0.2520865569484384 1 {I|L}A{I|L} 3 -1 26.682 0 0 2.5089 0 0 748.3082752912125 0 748.3082752912125 0 -0.7133375178436552 -0.7133375178436552 0 0 0.5 0 0 0 {I|L}A{I|L} 2.5089 - 111 NaN NaN 141692 NaN 19044 4220 23265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23267 92.51 NaN 231090 35 0 21110 0.261 -1 LYLEVFSML 9 70 565.7949960561589 1129.5754391791177 2 566.2981567382812 MULTI HCD FTMS 0 0 0 23265 42177.9609375 0.2575502424811476 -9 0.24588775634765625 2 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 6.723162845929126 0.3000504726104499 1 C(Carbamidomethyl (C)){I|L}{M(Oxidation (M))|F}[{I|L}T]SW 7 -1 32.836 0 0 2.9069 0 0 204.14387287228016 0 204.14387287228016 0 13.371600865782867 0 0 0 0 0 0.3494850021680094 0 C(Carbamidomethyl (C)){I|L}{M(Oxidation (M))|F}[{I|L}T]SW 2.9069 - 233 + NaN NaN 117561.4 NaN 19045 4220 23265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23268 92.513 NaN 273780 35 0 42140 0.261 + 31408 VYALYIVAL 9 68 512.8070775383951 1023.5996021435902 2 512.8074340820312 MULTI HCD FTMS 0 0 0 23265 20967.755859375 0.19754064587813447 7 -0.16014862060546875 3 Unmodified _VYALYIVAL_ ENSG00000164251|ENST00000296677|F2RL1;nc|ENSG00000164251|P55085|F2RL1 36.466142684027034 0.08156716203802528 1 [{I|L}P]D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DP 8 7 29.843 0 0 2.9155 0 0 0 110.1359938152963 110.1359938152963 0.6420404410090441 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}P]D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DP 2.9155 - 222 NaN NaN 146035 NaN 19046 4220 23265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23269 92.516 NaN 187910 35 0 11758 0.261 + 23499 RMRSCIVEL 9 61 553.7933954141839 1105.5722378951677 2 553.7933959960938 MULTI HCD FTMS 0 0 0 23265 17777.29296875 0.07161905929143415 24 -0.6075057983398438 4 Unmodified _RMRSCIVEL_ REV__ENSG00000144028|ENST00000323853|SNRNP200;REV__ENST00000497539.5_1_2:96940752-96950410:-|nuORF 31.26834338654808 0.10542797264966089 1 GNW{I|L}VE{I|L} 7 -1 36.265 0 0 3.2802 0 0 276.1463795392594 0 276.1463795392594 0 29.03319040378568 0 0 0 1.3569758080123702 0 0 1 GNW{I|L}VE{I|L} 3.2802 - 609 NaN NaN 123353.2 NaN 19047 4220 23265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23270 92.52 NaN 76134 35 0 8347.5 0.261 + 5508 FLCFFLSSF 9 38 555.7711400502094 1109.5277271672187 2 555.7720947265625 MULTI HCD FTMS 0 0 0 23265 7264.6123046875 0.11823601290732343 8 -0.19638824462890625 5 Unmodified _FLCFFLSSF_ ENST00000309137.12_1_16:57219763-57219925:-|nuORF 2.0597508629832335 0.3354026079994024 1 Q 1 9 5.4846 0 0 0.49431 0 0 132.0991167779885 846.3640841119749 978.4632008899634 0 0 0 0 0 0 0 0 0 Q 0.49431 - 5 + NaN NaN 89682.9 NaN 19048 4220 23265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23272 92.525 NaN 1532300 35 0 311630 0.327 + 20241 NYLPFIMEL 9 73 578.2912249331946 1154.567896933189 2 578.29150390625 MULTI HCD FTMS 0 0 0 23271 677543.375 0.33367316159089117 11 -0.28509521484375 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 152.41221235671458 6.276234901293889E-06 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 105.65 0 0 9.1507 9.1507 96.929 0 0 0 22.335097808377597 16.478174818886373 16.478174818886373 28.278777176623038 0 2.579689690656103 1.3010299956639813 0 1.7000612056866313 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[HK]E{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[YN]{I|L};[{M(Oxidation (M))|F}E]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[YN]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N[Y{I|L}]{I|L};{[QN]|[E{I|L}]|[KN]}M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YN]{I|L} 9.1507;6.7014;5.1267;4.6555;4.1794;0.92641;0.70488;0.68166;0.55236;0.53486 +;-;-;-;-;-;-;-;-;- + 798 NaN NaN 312698.6 NaN 19049 4221 23271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23273 92.529 NaN 157120 35 0 12023 0.261 + 18114 MPDENIFLF 9 62 563.2676099952614 1124.5206670573227 2 563.2694091796875 MULTI HCD FTMS 0 0 0 23271 56439.91796875 0.4834311474379749 -5 0.130889892578125 2 Unmodified _MPDENIFLF_ ENSG00000103502|ENST00000219789|CDIPT;ENST00000562041.1_1_16:29874076-29874319:-|nuORF;ENST00000563893.5_1_16:29874076-29874319:-|nuORF;ENST00000564296.5_1_16:29872547-29874223:-|nuORF;nc|ENSG00000103502|O14735-3|CDIPT 19.256988751693697 0.19398022840297344 1 VVE{M(Oxidation (M))|F} 4 7 32.027 0 0 2.848 0 0 632.273729392775 0 632.273729392775 0 2.3564494996115535 0 0 0 0.8494850021680094 0 0 0 VVE{M(Oxidation (M))|F} 2.848 - 449 NaN NaN 110699.5 NaN 19050 4221 23271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23274 92.533 NaN 69611 35 0 4756 0.261 + 22496 QRRGRLGVF 9 53 544.8247064187354 1087.6348599042708 2 544.8253784179688 MULTI HCD FTMS 0 0 0 23271 51689.5625 0.6036186479335827 -2 0.05226898193359375 3 Unmodified _QRRGRLGVF_ REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant;REV__ENSG00000008300|ENST00000164024|CELSR3;REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 4.3292370932331545 0.3181982124262546 1 P 1 -1 5.4846 0 0 0.50426 0 0 825.4934547302458 162.06252466373283 987.5559793939786 0 0 0 0 0 0 0 0 0 P 0.50426 - 25 + NaN NaN 94913.3 NaN 19051 4221 23271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23275 92.536 NaN 99276 35 0 11045 0.261 + 34950 YSLYQKALN 9 58 550.2937097489834 1098.5728665647666 2 550.2939453125 MULTI HCD FTMS 0 0 0 23271 25647.478515625 0.09497212841336748 8 -0.203125 4 Unmodified _YSLYQKALN_ REV__nc|ENSG00000150687|O95084-2|PRSS23 10.823927491677226 0.26684000660059787 1 {I|L}[MT] 3 -1 19.705 0 0 1.7937 0 0 735.3948075457162 0 735.3948075457162 0 2.0289375146764854 0 0 0 0.9247425010840047 0 0 0 {I|L}[MT] 1.7937 - 44 NaN NaN 96268.6 NaN 19052 4221 23271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23277 92.541 NaN 274110 35 0 14630 0.327 -1 0 85 575.3453608058733 1148.6761686785464 2 575.3455810546875 MULTI HCD FTMS 0 0 0 23276 305865.875 0.8289213774936559 -2 0.0356903076171875 1 NaN NaN 1 {I|L} 1 -1 3.8564 0 0 0.33572 0 0 646.3772433052542 386.2038973443969 1032.5811406496512 0 0 0 0 0 0.28872548999643577 0 0 0 {I|L} 0.33572 - 27 + NaN NaN 124704.7 NaN 19053 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23278 92.545 NaN 394910 35 0 27109 0.263 -1 0 78 437.2570625673022 1308.7493583021067 3 437.25738525390625 MULTI HCD FTMS 0 0 0 23276 255526.78125 0.6071420668971327 -6 0.14708709716796875 2 NaN NaN 1 QV 2 -1 12.474 0 0 0.95314 0 0 766.4553676507987 312.14951502017817 1078.6048826709768 0 0 0 0 0 0.5 0 0 0 QV 0.95314 - 34 + NaN NaN 145483.6 NaN 19054 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23279 92.549 NaN 312410 35 0 17906 0.261 + 21419 PVRRRRGRGG 10 96 583.8586645900098 1165.7027762468194 2 583.8590698242188 MULTI HCD FTMS 0 0 0 23276 156822.28125 0.7593696595964803 -3 0.0684661865234375 3 Unmodified _PVRRRRGRGG_ ENST00000520674.5_1_5:141017085-141017214:+|nuORF 3.5964929083625545 0.45626689593999237 1 T{M(Oxidation (M))|F} 2 10 14.949 0 0 1.2824 0 0 899.5761754032998 0 899.5761754032998 0 6.365006360318688 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.2824 - 200 + NaN NaN 128582.1 NaN 19055 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23280 92.552 NaN 223120 35 0 33286 0.261 + 13471 KYPENFFLL 9 51 585.8135101996211 1169.612467466042 2 585.8134155273438 MULTI HCD FTMS 0 0 0 23276 188206.8125 0.3090852395482994 18 -0.4770050048828125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.14443998892849796 1 M[PG][WP]EP{I|L} 8 7 34.174 0 0 2.9218 0 0 244.1783924787125 0 244.1783924787125 0 19.4812969097282 0 0 0 1.4247425010840047 0 0.3807196863200844 0 M[PG][WP]EP{I|L} 2.9218 - 167 NaN NaN 113308.1 NaN 19056 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23281 92.556 NaN 432590 35 0 101960 0.261 + 22417 QPYGGFLDIL 10 59 561.7951658724708 1121.5757788117414 2 561.7951049804688 MULTI HCD FTMS 0 0 0 23276 130510.359375 0.06375057059558822 -7 0.1733551025390625 5 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 62.57269311338072 0.03206542651389879 1 Y{I|L}D{I|L}{I|L} 5 5 56.568 0 0 5.0436 0 0 486.23484999824376 0 486.23484999824376 0 41.08349385648225 0 0 0 1.2059771852360797 0 0.805462187404089 0 Y{I|L}D{I|L}{I|L} 5.0436 - 64 NaN NaN 145579.7 NaN 19057 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23282 92.559 NaN 514360 35 0 55131 0.261 + -1 IEVYCFLI 8 69 528.7748397343565 1055.535126535513 2 528.7848510742188 MULTI HCD FTMS 0 0 0 23276 37257.46875 0.01970343482997196 49 -1.2761993408203125 6 Carbamidomethyl (C) _IEVYC(Carbamidomethyl (C))FLI_ REV__ENSG00000173578|ENST00000309285|XCR1 24.67388899826682 0.4122521268485776 1 S{I|L}{M(Oxidation (M))|F}YNQ 6 -1 41.776 0 0 3.9578 0 0 285.16856581855626 0 285.16856581855626 0 14.992822134202015 0 0 0 0.7742275032520141 0 1.066901560044258 0 S{I|L}{M(Oxidation (M))|F}YNQ 3.9578 - 289 NaN NaN 160192.3 NaN 19058 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23283 92.562 NaN 125750 35 0 9725.7 0.261 -1 FPVNQLFDML 10 48 620.3076264800765 1238.6007000269528 2 620.3060302734375 MULTI HCD FTMS 0 0 0 23276 42615.53125 0.10095703212768246 26 -0.6865692138671875 7 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 28.494509381512117 0.24525010509582015 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 -1 43.175 0 0 3.4858 0 0 698.3744541894052 0 698.3744541894052 0 37.69077524932108 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.4858 + + 35 NaN NaN 105311.9 NaN 19059 4222 23276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23285 92.567 NaN 1454600 35 0 219550 0.327 + 19398 NPFQFEITF 9 82 571.7799461961537 1141.5453394591073 2 571.7797241210938 MULTI HCD FTMS 0 0 0 23284 701871.3125 0.570787820431953 3 -0.07868194580078125 1 Unmodified _NPFQFEITF_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 129.77232118876745 0.0006187813247758304 1 Q{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 6 3 81.609 0 0 7.149 0 0 358.1639576642594 0 358.1639576642594 0 46.264304312855536 0 0 0 2.6549471895720984 0 0.805462187404089 1.0629529932484498 + Q{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 7.149 + + 711 NaN NaN 315262.7 NaN 19060 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23286 92.571 NaN 800560 35 0 165130 0.261 -1 MPPWENIWL 9 67 601.2890127635567 1200.5634725939133 2 601.289306640625 MULTI HCD FTMS 0 0 0 23284 333462.34375 0.7928564571601121 -2 0.042388916015625 2 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 36.506200033944 0.08138327636155518 1 EN{I|L}W{I|L} 5 -1 59.706 0 0 4.9732 0 0 527.2205677716812 0 527.2205677716812 0 47.23197507588033 0 0 0 1.8494850021680094 0 0.3252574989159953 0 EN{I|L}W{I|L} 4.9732 + + 178 NaN NaN 210925 NaN 19061 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23287 92.575 NaN 741970 35 0 148430 0.262 + 22333 QPLIIAVVL 9 48 483.32328102459905 964.6320091159981 2 483.3233337402344 MULTI HCD FTMS 0 0 0 23284 220995.5625 0.16048326220369002 -6 0.1470794677734375 3 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 53.57557251787612 0.02656881086235134 1 AVV{I|L} 4 5 44.68 0 0 4.6319 0 0 564.3623875033574 0 564.3623875033574 0 37.69077524932108 0 0 0 1.4247425010840047 0 0 0 + AVV{I|L} 4.6319 + + 61 NaN NaN 193575.1 NaN 19062 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23288 92.578 NaN 304760 35 0 17353 0.261 + 387 AIRRPEQATRR 11 70 451.93240636375714 1352.7753896914714 3 451.9325866699219 MULTI HCD FTMS 0 0 0 23284 242139.078125 0.9006351386755668 5 -0.1345062255859375 4 Unmodified _AIRRPEQATRR_ REV__ENST00000597578.1_1_16:86524111-86542471:-|nuORF;REV__ENST00000599749.5_1_16:86524596-86542567:-|nuORF 1.9275035174196113 0.4104672908605315 1 Q 1 -1 8.9794 0 0 0.66378 0 0 722.4303712361965 499.2761431619904 1221.7065143981868 0 0 0 0 0 0.5 0 0 0 Q 0.66378 + + 41 + NaN NaN 125170.3 NaN 19063 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23289 92.582 NaN 46991 35 0 4562 0.261 -1 0 39 641.8824831880886 1281.750413442977 2 641.88232421875 MULTI HCD FTMS 0 0 0 23284 32932.36328125 0.016889912601102855 45 -1.15478515625 5 NaN NaN 1 A 1 -1 6.9897 0 0 0.54532 0 0 193.1343988939521 1014.5678194635374 1207.7022183574895 0 0 0 0 0 0 0 0 0 A 0.54532 - 2 + NaN NaN 91939.6 NaN 19064 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23290 92.585 NaN 85389 35 0 7511.8 0.264 + 15788 LPHHAMFG 8 44 455.2253708018938 NaN 0 455.2242736816406 PEAK HCD FTMS 0 0 0 23284 27846.9375 0.556990228081236 2 -0.05916595458984375 6 Unmodified _LPHHAMFG_ CON__P17690 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89064.7 NaN 19065 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23291 92.588 NaN 36856 35 0 3315.3 0.261 + -1 IFMCKMCVSL 10 28 624.2876447213257 NaN 0 624.7740478515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _IFMCKM(Oxidation (M))C(Carbamidomethyl (C))VSL_ REV__ENST00000319888.10_1_18:2567287-2567389:-|nuORF 1.4819007175156935 0.33891598740166873 1 E 1 -1 1.7827 0 0 0.14301 0 0 660.2390945190201 454.2600191705688 1114.499113689589 0 0 0 0 0 0 0 0 0 E 0.14301 - 1 + NaN NaN 88992.1 NaN 19066 4223 23284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23293 92.593 NaN 877380 35 0 117220 0.327 + 19399 NPFQFEITF 9 80 571.7799461961537 1141.5453394591073 2 571.77978515625 MULTI HCD FTMS 0 0 0 23292 461234.9375 0.37509338249622937 4 -0.10819244384765625 1 Unmodified _NPFQFEITF_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 60.07390631473393 0.0174780869009295 1 {M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 5 4 61.938 0 0 5.4258 0 0 486.22261244941564 0 486.22261244941564 0 31.773174902439578 0 0 0 2.274227503252014 0 0.4247425010840047 0 + {M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 5.4258 + + 368 NaN NaN 213819 NaN 19067 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23294 92.598 NaN 1144600 35 0 399440 0.261 + 15402 LPDIALDVF 9 50 501.7790405302811 1001.5435281273623 2 501.7792053222656 MULTI HCD FTMS 0 0 0 23292 361995.8125 0.46722208011257343 -1 0.02631378173828125 2 Unmodified _LPDIALDVF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 78.14939416004806 0.006451203201226903 1 {NN|[MP]|[D{I|L}]|[EV]}P{I|L}A{I|L}DV{M(Oxidation (M))|F} 9 2 + 77.357 0 0 7.7237 7.7237 96.447 0 0 0 3.9524249272868417 41.15865011156764 3.9524249272868417 77.35653769445157 0 2.4247425010840047 0 0.8494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}P{I|L}A{I|L}DV{M(Oxidation (M))|F} 7.7237 - 174 NaN NaN 259470.5 NaN 19068 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23295 92.601 NaN 442120 35 0 63500 0.261 + -1 YLILMCTIF 9 65 595.3039921606409 1188.5934313880816 2 595.292724609375 MULTI HCD FTMS 0 0 0 23292 52118.5546875 0.8494222972151368 -1 0.02631378173828125 3 Carbamidomethyl (C),Oxidation (M) _YLILM(Oxidation (M))C(Carbamidomethyl (C))TIF_ REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF 21.74664581756881 0.17247014374749275 1 [Y{I|L}]HKAY{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 -1 + 49.451 0 0 4.1604 4.1604 83.25 0 0 0 7.047509540478032 7.047509540478032 7.047509540478032 7.047509540478032 0 1.305945812348389 1.5228787452803376 0.7059771852360797 0 [Y{I|L}]HKAY{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[Y{I|L}]{[WN]|[YH]}AK{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[Y{I|L}]HYAK{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[Y{I|L}][HK]AY{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}S{[NV]|[RG]}[HN]{[ET]|[MV]};[Y{I|L}][TA]Q{I|L}[HN]{[ET]|[MV]} 4.1604;3.5675;3.2703;2.9977;1.0238;1.0238 -;-;-;-;-;- 158 + NaN NaN 156734.2 NaN 19069 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23296 92.605 NaN 327880 35 0 44495 0.261 + 26859 SYIPLFPQL 9 45 539.3024627553938 1076.5903725775875 2 539.3026123046875 MULTI HCD FTMS 0 0 0 23292 71316.4609375 0.037403351632750825 11 -0.2884979248046875 4 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 29.081581746732265 0.1154664336125038 1 [Y{I|L}]S[{I|L}P]{M(Oxidation (M))|F} 6 5 30.608 0 0 2.843 0 0 0 353.183765857208 353.183765857208 26.00379364601565 0 0 0 0 1.5 1.2218487496163564 0 0 [Y{I|L}]S[{I|L}P]{M(Oxidation (M))|F} 2.843 - 157 NaN NaN 132010.1 NaN 19070 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23297 92.608 NaN 439340 35 0 116490 0.261 -1 0 74 633.3545017534481 632.347225286848 1 633.36962890625 MULTI HCD FTMS 0 0 0 23292 17889.0703125 0.16724896031859826 11 -0.2884979248046875 5 NaN NaN 1 D 1 -1 5.401 0 0 0.85412 0 0 53.98359110891676 460.3070235100635 514.2906146189803 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.85412 - 8 + NaN NaN 149324.9 NaN 19071 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23298 92.611 NaN 340750 35 0 57001 0.261 + 28937 TWYPVSIPAF 10 64 590.8052199146704 1179.5958868961407 2 590.8060302734375 MULTI HCD FTMS 0 0 0 23292 129659.7890625 0.0851585496439653 23 -0.6111907958984375 6 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 39.94969957227396 0.1458432724694501 1 [YN]{I|L}QQS{I|L}CV{I|L} 10 8 + 56.604 0 0 4.7986 4.7986 86.96 0 0 0 0.26802492411967194 34.921525057367404 0.26802492411967194 10.243500300354142 0 1.4247425010840047 0 0.7742275032520141 0 [YN]{I|L}QQS{I|L}CV{I|L};{[WT]|[RM]}Y[VP]S{I|L}[PA]{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S{I|L}[DV]T;[YN][NG]VVS{I|L}CV{I|L};{[WT]|[RM]}Y[VP]S[PA]{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}Y[VP]S[PA]{I|L}{M(Oxidation (M))|F};[YN]{I|L}QQC{[TV]|[{I|L}S]}V{I|L};[YN]{I|L}{[QC]|[C(Carbamidomethyl (C))A]}Q{[TV]|[{I|L}S]}V{I|L} 4.7986;3.9302;3.7421;3.6843;3.5507;3.1463;1.5556;0.79108 -;+;-;-;-;-;-;- + 399 NaN NaN 137150.9 NaN 19072 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23299 92.615 NaN 129520 35 0 33846 0.264 + 14655 LGIWIYSYSNS 11 41 434.8822913699993 NaN 0 434.88226318359375 PEAK HCD FTMS 0 0 0 23292 74516.1171875 0.7241710733149657 -46 1.2044448852539062 7 Unmodified _LGIWIYSYSNS_ REV__ENSG00000143954|ENST00000272324|REG3G 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99909.1 NaN 19073 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23300 92.618 NaN 220650 35 0 26766 0.261 + 34015 YMEEVPLAL 9 54 532.7703529432426 1063.5261529532852 2 532.7709350585938 MULTI HCD FTMS 0 0 0 23292 55941.4921875 0.6197442127724322 -2 0.0525054931640625 8 Unmodified _YMEEVPLAL_ ENSG00000124608|ENST00000244571|AARS2 7.289230182591677 0.29575926068275815 1 {I|L}A{I|L} 3 6 31.198 0 0 2.9334 0 0 748.3110218732437 0 748.3110218732437 0 10.400990676322905 0 0 0 0.5 0 0 0 + {I|L}A{I|L} 2.9334 + + 20 NaN NaN 110604.1 NaN 19074 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23301 92.621 NaN 230750 35 0 18880 0.261 -1 VLPLMLPSF 9 68 516.7936687994951 1031.57278466579 2 516.7936401367188 MULTI HCD FTMS 0 0 0 23292 61634.2734375 0.6736612548759017 7 -0.18683624267578125 9 Oxidation (M) _VLPLM(Oxidation (M))LPSF_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-6|ALS2CL 50.855029805455786 0.030374663808198754 1 [{I|L}V][{I|L}P]{M(Oxidation (M))|F}{I|L}PS{M(Oxidation (M))|F} 9 -1 + 37.654 0 0 3.6502 3.6502 86.456 0 0 0 13.54389926921116 3.5810433208142527 3.5810433208142527 13.979400086720378 0 2.2034021960761265 0 0.4247425010840047 0 [{I|L}V][{I|L}P]{M(Oxidation (M))|F}{I|L}PS{M(Oxidation (M))|F};[{I|L}V][{I|L}P]{M(Oxidation (M))|F}S[{I|L}P]{M(Oxidation (M))|F} 3.6502;2.295 +;- + 198 + NaN NaN 113986.1 NaN 19075 4224 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23303 92.626 NaN 1418400 35 0 235740 0.327 + 11445 IYQEVWNLF 9 74 606.3083799907627 1210.6022070483252 2 606.30859375 MULTI HCD FTMS 0 0 0 23302 838713.4375 1 0 0 1 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 110.5527297667825 0.0028521687250969148 1 [Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F} 9 0 + 98.324 0 0 8.1219 8.1219 87.822 0 0 0 16.663092650152223 58.142040441009044 16.663092650152223 2.345143534448013 0 2.6861818737241734 1.3010299956639813 0.5484550065040282 1.0114393726401687 + + [Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWGG{I|L}{M(Oxidation (M))|F};[YQ]{I|L}EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]}QWN{I|L}{M(Oxidation (M))|F};[YQ]{I|L}EVWGG{I|L}{M(Oxidation (M))|F};[YQ]E{I|L}VWN{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]}[AG]WN{I|L}{M(Oxidation (M))|F} 8.1219;7.9282;7.3613;6.8203;6.5757;6.2582;5.8151;5.8118;5.699;5.4975 +;-;-;-;-;-;-;-;-;- + 2077 NaN NaN 306238.6 NaN 19076 4225 23302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23304 92.631 NaN 802160 35 0 111800 0.261 + 1776 CLRSLLQLP 9 66 521.8099815723901 NaN 0 521.7946166992188 PEAK HCD FTMS 0 0 0 23302 38749.11328125 1 0 0 2 Unmodified _CLRSLLQLP_ REV__nc|ENSG00000076248|P13051-2|UNG 8.155526934196011 0.2557262968844962 1 V{M(Oxidation (M))|F}P 3 -1 11.427 0 0 1.097 0 0 131.12426794369043 564.2672013053495 695.39146924904 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F}P 1.097 - 131 + NaN NaN 201172.7 NaN 19077 4225 23302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23305 92.634 NaN 295950 35 0 18408 0.261 + 17567 LYVLYFDF 8 62 540.2783810361078 NaN 0 540.29248046875 PEAK HCD FTMS 0 0 0 23302 9071.8701171875 0.4335049135654314 1 -0.0195159912109375 3 Unmodified _LYVLYFDF_ ENSG00000109181|ENST00000265403|UGT2B10;UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant 17.086550045450526 0.386433553673079 1 {I|L}AQ{I|L}M 5 6 10.164 0 0 0.94236 0 0 278.0632185157718 241.15566431217033 519.2188828279421 0 0 0 0 0 0 0 0 0.3252574989159953 {I|L}AQ{I|L}M 0.94236 - 581 + NaN NaN 125192.9 NaN 19078 4225 23302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23306 92.637 NaN 224450 35 0 19151 0.261 + 23331 RKEERVRKRN 10 69 457.60797884175486 1369.8021071254645 3 457.6083984375 MULTI HCD FTMS 0 0 0 23302 104923.28125 1 0 0 4 Unmodified _RKEERVRKRN_ REV__ENST00000343796.6_1_5:142814714-142814924:-|nuORF 0.776531954647913 0.4711933975711956 1 E 1 -1 6.9897 0 0 0.51027 0 0 556.3863489240958 681.3314913385374 1237.7178402626332 0 0 0 0 0 0 0 0 0 E 0.51027 + + 8 + NaN NaN 126523.6 NaN 19079 4225 23302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23307 92.641 NaN 75199 35 0 7421 0.261 + 409 AKIARKQLSHS 11 41 619.8695587769541 1237.7245646207082 2 619.8692626953125 MULTI HCD FTMS 0 0 0 23302 54217.7421875 1 0 0 5 Unmodified _AKIARKQLSHS_ ENST00000559109.2_1_15:31745531-31745762:-|nuORF 1.0714618166137932 0.41422159895841093 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 11 11.682 0 0 0.94386 0 0 130.21951198574567 695.3504732721311 825.5699852578769 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 0.94386 - 7 + NaN NaN 86472.8 NaN 19080 4225 23302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23309 92.646 NaN 269460 35 0 56145 0.327 + -1 LGKCNACS 8 52 419.1831952503162 836.3518375674324 2 419.18341064453125 MULTI HCD FTMS 0 0 0 23308 175565.125 0.44746370405202673 9 -0.2361297607421875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGKCNACS_ REV__ENST00000299300.10_1_12:69991496-69991529:+|nuORF 2.302733041254933 0.5385759549224092 1 Q 1 -1 11.026 0 0 1.3183 0 0 155.09263454184492 550.1809176080686 705.2735521499135 0 0 0 0 0 0.3807196863200844 0 0 0.5 Q 1.3183 - 2 + NaN NaN 117777.2 NaN 19081 4226 23308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23310 92.65 NaN 234620 35 0 46208 0.261 + 15467 LPDLSHLTE 9 54 512.769801362275 1023.5250497913499 2 512.7699584960938 MULTI HCD FTMS 0 0 0 23308 110545.1328125 0.9201900420731824 1 -0.01958465576171875 2 Unmodified _LPDLSHLTE_ ENSG00000079841|ENST00000521978|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1 25.399314129420986 0.14091189997036632 1 {I|L}PD{I|L}[{I|L}A]D 7 4 60.539 0 0 5.9147 0 0 0 283.10630212955317 283.10630212955317 36.07463842698671 0 0 0 0 1.9604093769761874 1.3979400086720375 0 0 {I|L}PD{I|L}[{I|L}A]D 5.9147 - 223 + NaN NaN 118549.7 NaN 19082 4226 23308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23311 92.654 NaN 363080 35 0 56962 0.261 + -1 IPVLFIFP 8 55 494.30148099635284 NaN 0 494.31451416015625 PEAK HCD FTMS 0 0 0 23308 9179.4453125 0.3994039715739243 -2 0.0523681640625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IPVLFIFP_ REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF 2.8892196856762586 0.38822285293237185 1 {I|L}{I|L}{I|L}AV 5 -1 18.672 0 0 1.8926 0 0 225.08592695484248 249.12207971744377 474.2080066722863 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{I|L}AV 1.8926 - 44 + NaN NaN 134562 NaN 19083 4226 23308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23312 92.657 NaN 136450 35 0 17410 0.261 + 12311 KLWGRNVF 8 47 510.2919954779281 1018.5694380226562 2 510.28106689453125 MULTI HCD FTMS 0 0 0 23308 17202.44140625 0.5798528163414389 1 -0.01958465576171875 4 Unmodified _KLWGRNVF_ ENSG00000174982|ENST00000641692|OR4S2 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 7 20.797 0 0 2.0418 0 0 853.490731212889 0 853.490731212889 0 14.343246711440187 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F} 2.0418 + + 12 + NaN NaN 101118.2 NaN 19084 4226 23308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23313 92.66 NaN 95056 35 0 10018 0.261 + 25889 SMWFLWNIF 9 44 622.303440025992 1242.592327118784 2 622.3042602539062 MULTI HCD FTMS 0 0 0 23308 16228.76953125 0.4515131676329299 -1 0.0195159912109375 5 Unmodified _SMWFLWNIF_ nc|ENSG00000102466|Q92915-2|FGF14 17.11289562659939 0.2125047172822487 1 [YN]{I|L}HHWN{I|L}{M(Oxidation (M))|F} 9 5 + 62.101 0 0 4.9977 4.9977 86.265 0 0 0 23.979400086720368 16.478174818886373 16.478174818886373 9.208187539523749 0 0.9247425010840047 1.6989700043360187 0 0 [YN]{I|L}HHWN{I|L}{M(Oxidation (M))|F};[YN]{I|L}HHWGG{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[QN]|[E{I|L}]|[KN]}{[MS]|[{M(Oxidation (M))|F}A]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YHHWN{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[DS]|[MA]|[CV]|TT}WW{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YHH{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YHHWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[QN]|[E{I|L}]|[KN]}{[MS]|[{M(Oxidation (M))|F}A]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}WW{I|L}{M(Oxidation (M))|F} 4.9977;4.2566;3.612;3.0679;2.845;2.3268;2.3268;1.6822;0.91524 -;-;-;-;-;-;-;-;- 155 NaN NaN 96034 NaN 19085 4226 23308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23315 92.665 NaN 1036200 35 0 195510 0.327 + 20242 NYLPFIMEL 9 78 578.2912249331946 1154.567896933189 2 578.2914428710938 MULTI HCD FTMS 0 0 0 23314 558991.75 0.27528945217082973 17 -0.447357177734375 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 126.56589448801843 0.0008132384440316759 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 94.399 0 0 8.1762 8.1762 96.407 0 0 0 26.31105604145162 73.82606118306418 26.31105604145162 46.72651136868352 0 2.610924374808178 1.2218487496163564 0 1.2249073637206094 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{I|L}T]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}V][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP] 8.1762;4.1291;4.123;3.6026;0.70097 +;-;-;-;- + 1164 NaN NaN 244245.7 NaN 19086 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23316 92.67 NaN 271170 35 0 49354 0.261 -1 0 65 633.3545017534481 632.347225286848 1 633.3695678710938 MULTI HCD FTMS 0 0 0 23314 21276.796875 0.1989215813952741 14 -0.382110595703125 2 NaN NaN 1 M{I|L} 2 -1 9.464 0 0 1.4966 0 0 370.21980483222814 0 370.21980483222814 0 3.979400086720375 0 0 0 0 0 0 0 M{I|L} 1.4966 - 6 NaN NaN 120265.4 NaN 19087 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23317 92.673 NaN 200130 35 0 49494 0.264 -1 0 30 405.1186809059501 808.2228088787002 2 405.1191101074219 MULTI HCD FTMS 0 0 0 23314 62846.828125 0.25294257736365366 14 -0.382110595703125 3 NaN NaN 1 V 1 -1 0.9691 0 0 0.11991 0 0 312.0130138120971 394.11570154361567 706.1287153557128 0 0 0 0 0 0 0 0 0 V 0.11991 - 4 + NaN NaN 114410.8 NaN 19088 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23318 92.677 NaN 204760 35 0 14586 0.261 -1 FATMTNFSWL 10 71 617.2831706452589 NaN 0 617.29931640625 PEAK HCD FTMS 0 0 0 23314 30218.916015625 1 0 0 4 Oxidation (M) _FATM(Oxidation (M))TNFSWL_ ENSG00000106128|ENST00000326139|GHRHR 8.155526934196011 0.33320428830121973 1 YQEVW 5 -1 17.836 0 0 1.4471 0 0 113.05576892548022 411.1642654819549 524.2200344074352 0 0 0 0 0 0 0 0 0.3054621874040891 YQEVW 1.4471 - 259 + NaN NaN 117894.5 NaN 19089 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23319 92.68 NaN 76994 35 0 5585.4 0.261 + 22497 QRRGRLGVF 9 51 544.8247064187354 1087.6348599042708 2 544.8245239257812 MULTI HCD FTMS 0 0 0 23314 61231.93359375 0.7150522306358909 4 -0.1148834228515625 5 Unmodified _QRRGRLGVF_ REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant;REV__ENSG00000008300|ENST00000164024|CELSR3;REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4237 0 0 922.5561683532927 0 922.5561683532927 0 4.471580313422194 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4237 + + 9 + NaN NaN 98368.7 NaN 19090 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23320 92.683 NaN 382700 35 0 27080 0.261 + 2168 DICHFLDIE 9 85 552.7575033569718 1103.5004537807436 2 552.7577514648438 MULTI HCD FTMS 0 0 0 23314 98182.6328125 0.9271910179008087 2 -0.062469482421875 6 Unmodified _DICHFLDIE_ REV__ENSG00000110958|ENST00000262033|PTGES3;REV__ENST00000537473.2_1_12:57059942-57081218:-|nuORF;REV__nc|ENSG00000110958|Q15185-2|PTGES3;REV__nc|ENSG00000110958|Q15185-3|PTGES3;REV__nc|ENSG00000110958|Q15185-4|PTGES3 20.453626601364224 0.18364154288633264 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EE{I|L}DE{I|L} 9 -1 + 30.34 0 0 2.7494 2.7494 82.336 0 0 0 5.174837133936311 11.786910678798126 5.174837133936311 7.7815125038364386 0 0.9247425010840047 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EE{I|L}DE{I|L};{[QN]|[E{I|L}]|[KN]}DEE{I|L}DE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}EEDE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NS]{[VA]|[{I|L}G]}{I|L}DE{I|L};M{I|L}DYYWT{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}EEDE{I|L};[YV][VG][Y{M(Oxidation (M))|F}]M[EP];{[QN]|[E{I|L}]|[KN]}VEEEDE{I|L};M{I|L}MEE[HT]T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NS]{[VA]|[{I|L}G]}{I|L}M[EP] 2.7494;2.0443;1.8639;1.7993;1.5549;1.1588;1.071;1.0456;0.75192;0.73352 -;-;-;-;-;-;-;-;-;- 765 NaN NaN 135398.2 NaN 19091 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23321 92.687 NaN 152370 35 0 27510 0.261 + 10546 IPIFTEEFL 9 62 554.8001092097883 1107.5856654863765 2 554.8001708984375 MULTI HCD FTMS 0 0 0 23314 52620.97265625 0.9413894117871506 -2 0.03910064697265625 7 Unmodified _IPIFTEEFL_ ENSG00000140382|ENST00000336216|HMG20A 30.636539890814138 0.10832830463492794 1 {M(Oxidation (M))|F}TEE{M(Oxidation (M))|F}{I|L} 6 3 34.562 0 0 3.1205 0 0 323.21995742011876 0 323.21995742011876 0 26.60351040942807 0 0 0 1.5044321917401078 0 0 0 + {M(Oxidation (M))|F}TEE{M(Oxidation (M))|F}{I|L} 3.1205 + + 264 NaN NaN 109921.5 NaN 19092 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23322 92.69 NaN 82943 35 0 4919.3 0.261 -1 FPVNQLFDML 10 43 620.3076264800765 1238.6007000269528 2 620.3076171875 MULTI HCD FTMS 0 0 0 23314 46310.69921875 0.10971095775986091 31 -0.8110504150390625 8 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 10.150570793230772 0.4161670024087991 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 -1 38.928 0 0 3.1429 0 0 698.3793202130875 0 698.3793202130875 0 36.453650195120844 0 0 0 1 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.1429 + + 13 NaN NaN 89669.6 NaN 19093 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23323 92.693 NaN 102350 35 0 8399.7 0.261 + -1 MPLDLFVPF 9 46 547.783081634911 1093.551610336622 2 547.783935546875 MULTI HCD FTMS 0 0 0 23314 46791.015625 1 0 0 9 Oxidation (M) _M(Oxidation (M))PLDLFVPF_ REV__PKHD1|p.V88M|1|0.56|ENSG00000170927|chr6:52082411-52082411|C/T|missense_variant 7.910154910731844 0.2910521888787154 1 Y[VP]{M(Oxidation (M))|F} 4 -1 23.812 0 0 2.1775 0 0 569.2885010610345 0 569.2885010610345 0 23.812281309285623 0 0 0 1 0 0 0 Y[VP]{M(Oxidation (M))|F} 2.1775 - 12 + NaN NaN 99876.7 NaN 19094 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23324 92.697 NaN 42204 35 0 4842.2 0.261 + 16697 LWYTPAPN 8 33 481.24122636011947 NaN 0 480.7830505371094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _LWYTPAPN_ ENST00000527304.1_1_11:65380411-65381302:-|nuORF 0.7936320650641473 0.38822285293237185 1 A 1 7 5.4846 0 0 0.57103 0 0 428.11824265988895 458.2898235558956 886.4080662157846 0 0 0 0 0 0 0 0 0 + A 0.57103 + + 1 + NaN NaN 83067.8 NaN 19095 4227 23314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23326 92.702 NaN 2464100 35 0 496040 0.327 + 22418 QPYGGFLDIL 10 75 561.7951658724708 1121.5757788117414 2 561.7955322265625 MULTI HCD FTMS 0 0 0 23325 1339507.625 0.6543110893252891 -1 0.0362396240234375 1 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 134.295615338601 1.1116339284287773E-05 1 N{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 6 5 79.87 0 0 7.1212 0 0 388.1739674298844 0 388.1739674298844 0 51.98970004336019 0 0 0 2.1861818737241734 0 0.7302046884880937 1.6549471895720984 N{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 7.1212 - 429 NaN NaN 460784.2 NaN 19096 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23327 92.706 NaN 544970 35 0 30195 0.263 -1 0 85 437.2570625673022 1308.7493583021067 3 437.2572326660156 MULTI HCD FTMS 0 0 0 23325 420868.1875 1 0 0 2 NaN NaN 1 QVVQ 4 -1 9.1052 0 0 0.69572 0 0 634.3772785180334 217.1081484430297 851.4854269610631 0 0 0 0 0 0.8494850021680094 0 0 0 QVVQ 0.69572 - 82 + NaN NaN 160190 NaN 19097 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23328 92.71 NaN 228110 35 0 9078.8 0.261 -1 0 75 575.3453608058733 1148.6761686785464 2 575.3456420898438 MULTI HCD FTMS 0 0 0 23325 267164.46875 0.7240374214796298 4 -0.1082000732421875 3 NaN NaN 1 {M(Oxidation (M))|F}T{I|L} 3 -1 11.242 0 0 0.97867 0 0 502.2969095006152 282.1455477350219 784.4424572356371 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}T{I|L} 0.97867 - 38 + NaN NaN 115389.3 NaN 19098 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23329 92.713 NaN 159940 35 0 5420.2 0.261 + 23263 RGRRGGVRPR 10 88 583.8586645900098 1165.7027762468194 2 583.85888671875 MULTI HCD FTMS 0 0 0 23325 138660.65625 0.6714268820521131 3 -0.078643798828125 4 Unmodified _RGRRGGVRPR_ ENST00000355280.10_1_17:4736705-4736843:+|nuORF 1.4819007175156935 0.4674597685733628 1 W 1 10 14.604 0 0 1.2528 0 0 961.6137087192789 0 961.6137087192789 0 6.064921830680703 0 0 0 0 0 0 0 W 1.2528 - 45 + NaN NaN 108835.9 NaN 19099 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23330 92.716 NaN 544320 35 0 48202 0.261 + 26609 SWFPDTLPGI 10 81 566.7880482406591 1131.5615435481182 2 566.787353515625 MULTI HCD FTMS 0 0 0 23325 109954.3125 0.7558288792683544 -1 0.0362396240234375 5 Unmodified _SWFPDTLPGI_ ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF 62.57269311338072 0.03206542651389879 1 {I|L}TDPESVS 8 9 44.313 0 0 3.9161 0 0 285.1685633336804 0 285.1685633336804 0 20.39983023038191 0 0 0 1.7302046884880937 0 0.25 0 {I|L}TDPESVS 3.9161 - 760 NaN NaN 166699.4 NaN 19100 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23331 92.72 NaN 255200 35 0 84903 0.261 + 19535 NSHDGLDGPTY 11 38 588.2505442091012 1174.4865354850024 2 588.24951171875 MULTI HCD FTMS 0 0 0 23325 55164.234375 0.6359882479897889 -1 0.0362396240234375 6 Unmodified _NSHDGLDGPTY_ ENSG00000131467|ENST00000590720|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF;nc|ENSG00000131467|P61289-2|PSME3;nc|ENSG00000131467|P61289-3|PSME3 2.735195868890462 0.4069250265843076 1 SA 2 10 16.198 0 0 1.3791 0 0 0 1013.3807373025228 1013.3807373025228 12.218487496163561 0 0 0 0 0 0 0 0 SA 1.3791 - 2 + NaN NaN 121260.4 NaN 19101 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23332 92.723 NaN 302550 35 0 129400 0.262 + 9935 IDLMENRT 8 45 496.2477616864371 990.4809704396743 2 496.2483825683594 MULTI HCD FTMS 0 0 0 23325 42783.28125 0.6856307948294674 -1 0.0362396240234375 7 Unmodified _IDLMENRT_ REV__ENSG00000107130|ENST00000372398|NCS1;REV__nc|ENSG00000107130|P62166-2|NCS1;REV__NCS1|p.I116M|1|0.14|ENSG00000107130|chr9:130222690-130222690|C/G|missense_variant 32.30548876998284 0.3297748069446609 1 {I|L}D{I|L} 3 -1 51.995 0 0 5.2494 0 0 0 646.2623385065061 646.2623385065061 45.00508444608478 0 0 0 0 0.5 1.6989700043360187 0.3807196863200844 0 {I|L}D{I|L} 5.2494 + + 22 + NaN NaN 121635.4 NaN 19102 4228 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23334 92.728 NaN 1057100 35 0 204670 0.327 + 22334 QPLIIAVVL 9 58 483.32328102459905 964.6320091159981 2 483.3233947753906 MULTI HCD FTMS 0 0 0 23333 1377063 1 0 0 1 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 53.57557251787612 0.02656881086235134 1 AVV{I|L} 4 5 41.23 0 0 4.2742 0 0 564.3629688401388 0 564.3629688401388 0 34.24024714504206 0 0 0 1.3807196863200843 0 0 0 + AVV{I|L} 4.2742 + + 97 NaN NaN 230328.5 NaN 19103 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23335 92.732 NaN 651200 35 0 113270 0.261 -1 MPPWENIWL 9 71 601.2890127635567 1200.5634725939133 2 601.2894287109375 MULTI HCD FTMS 0 0 0 23333 315579.65625 0.750337700480404 4 -0.11151123046875 2 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.13340543277302316 1 AMN{I|L}W{I|L} 6 -1 49.245 0 0 4.1019 0 0 454.18440444160314 0 454.18440444160314 0 28.047444008242906 0 0 0 1.1989700043360187 0 0 0 AMN{I|L}W{I|L} 4.1019 - 451 NaN NaN 195158 NaN 19104 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23336 92.736 NaN 205980 35 0 11487 0.264 + -1 RLFKMAVLRFG 11 74 451.93240636375714 1352.7753896914714 3 451.93255615234375 MULTI HCD FTMS 0 0 0 23333 191176.578125 0.7110803645756207 11 -0.29007720947265625 3 Oxidation (M) _RLFKM(Oxidation (M))AVLRFG_ REV__ENSG00000243678|ENST00000512737|NME2;REV__ENST00000485076.1_1_17:49244191-49244524:+|nuORF;REV__nc|ENSG00000243678|P22392-2|NME2 2.4347853303010236 0.4082425251555256 1 {M(Oxidation (M))|F}N 2 -1 20.701 0 0 1.5303 0 0 1073.61821181465 0 1073.61821181465 0 13.711375162600703 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}N 1.5303 - 32 NaN NaN 133910.9 NaN 19105 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23337 92.739 NaN 1461700 35 0 310520 0.261 + 5558 FLLALEPEL 9 66 522.8021825459961 1043.589812158792 2 522.8025512695312 MULTI HCD FTMS 0 0 0 23333 557099.375 0.46117488386281374 -4 0.10157012939453125 4 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 71.13359017698441 0.008721403657255008 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A{I|L}EPE{I|L} 9 0 + 52.546 0 0 5.0351 5.0351 90.129 0 0 0 1.1265905060493253 44.090475125574855 1.1265905060493253 27.998037644757044 0 1.3494850021680094 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A{I|L}EPE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A[EP]{I|L}E{I|L};[EP]{I|L}EV[{M(Oxidation (M))|F}V]V{I|L};{[QN]|[E{I|L}]|[KN]}PEV[{M(Oxidation (M))|F}V]V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[{I|L}P]DDV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[{I|L}P]{[CP]|[EA]}E{I|L} 5.0351;2.3523;2.0675;1.6103;1.4753;0.77983 +;-;-;-;-;- + 525 NaN NaN 303821.2 NaN 19106 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23338 92.742 NaN 370810 35 0 38978 0.261 + 35166 YVHRQVRP 8 66 527.7989745102805 1053.5833960873608 2 528.7846069335938 MULTI HCD FTMS 0 0 0 23333 24993.890625 0.6119331456470924 -7 0.18692779541015625 5 Unmodified _YVHRQVRP_ ENSG00000158481|ENST00000368170|CD1C 9.347437153973935 0.5250182646323369 1 [YV]{I|L} 3 6 26.427 0 0 2.5083 0 0 0 675.3436373346311 675.3436373346311 10.44887947791297 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]{I|L} 2.5083 - 187 + NaN NaN 142582.1 NaN 19107 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23339 92.746 NaN 47415 35 0 4038.3 0.261 -1 0 39 641.8824831880886 1281.750413442977 2 641.8825073242188 MULTI HCD FTMS 0 0 0 23333 75598.2421875 0.038771821276211094 51 -1.240203857421875 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103536.7 NaN 19108 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23340 92.749 NaN 419480 35 0 69013 0.263 + 32304 VYVATFLGF 9 62 508.7762536706323 1015.5379544080646 2 508.7755432128906 MULTI HCD FTMS 0 0 0 23333 105962.921875 0.6818559728770888 -3 0.08205413818359375 7 Unmodified _VYVATFLGF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 129.2004930540761 0.0006534604433583781 1 [YV]VAT{M(Oxidation (M))|F}{I|L}G{M(Oxidation (M))|F} 9 0 + 107.99 0 0 10.633 10.633 91.964 0 0 0 20.87128018967597 80.9864468880481 20.87128018967597 6.00833760139686 0 2.9247425010840047 1.5228787452803376 1.4916440611282624 0 + + [YV]VAT{M(Oxidation (M))|F}{I|L}G{M(Oxidation (M))|F};[YV]{I|L}GT{M(Oxidation (M))|F}{I|L}G{M(Oxidation (M))|F};[YV]VAG{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YV]{I|L}GG{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YV]VQ{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YV]{I|L}N{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 10.633;10.042;5.1906;4.599;4.0603;3.4687 +;-;-;-;-;- + 592 NaN NaN 151472.8 NaN 19109 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23341 92.752 NaN 806700 35 0 89156 0.261 + 27016 SYLQYLEYL 9 63 596.3002766236732 1190.5860003141463 2 596.2998657226562 MULTI HCD FTMS 0 0 0 23333 233585.234375 0.0984515800770466 -7 0.18692779541015625 8 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 125.52916310638031 0.0008761121089336018 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 97.687 0 0 8.205 8.205 94.407 0 0 0 9.137342758552691 72.25440627993265 9.137342758552691 16.74865027867405 0 2.4247425010840047 0 1.4604093769761874 1.024227503252014 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};[YE][KA]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}YE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}YE{I|L};[YE][KA]Y{I|L}YE{I|L};[YE]{I|L}Y[KA]EY{I|L};[YE]{I|L}Y[KA]YE{I|L};[YE]{I|L}Y{I|L}{[QS]|[NT]}Y{I|L};[YE]{I|L}Y{I|L}[QT][YV] 8.205;6.7982;6.771;6.5713;5.4308;5.3642;5.0327;3.5986;3.4305;0.071796 +;-;-;-;-;-;-;-;-;- + 1311 NaN NaN 212918.4 NaN 19110 4229 23333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23343 92.757 NaN 2020600 35 0 221800 0.327 -1 0 76 518.8102678258057 1035.6059827184113 2 518.8106079101562 MULTI HCD FTMS 0 0 0 23342 1379552.875 0.3882801242955392 1 -0.02286529541015625 1 NaN NaN 1 {I|L} 1 -1 12.034 0 0 1.162 0 0 767.4274681693863 152.07123743228752 919.4987056016738 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.162 - 52 + NaN NaN 254080.1 NaN 19111 4230 23342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23344 92.762 NaN 263240 35 0 85355 0.261 + 15403 LPDIALDVF 9 47 501.7790405302811 1001.5435281273623 2 501.77911376953125 MULTI HCD FTMS 0 0 0 23342 157783.90625 0.20364910957751003 5 -0.1245269775390625 2 Unmodified _LPDIALDVF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 37.97399986684836 0.07464525285885698 1 A{I|L}DV{M(Oxidation (M))|F} 5 4 56.454 0 0 5.6367 0 0 438.24751479316564 0 438.24751479316564 0 26.276362525516532 0 0 0 2 0 0 0 + A{I|L}DV{M(Oxidation (M))|F} 5.6367 + + 73 NaN NaN 121817.9 NaN 19112 4230 23342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23345 92.765 NaN 364940 35 0 53280 0.261 + -1 PQLDRGTIL 9 64 527.7989745102805 1053.5833960873608 2 527.7990112304688 MULTI HCD FTMS 0 0 0 23342 100958.0546875 0.45732721186996717 -2 0.05577850341796875 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PQLDRGTIL_ REV__ENST00000554737.2_1_14:73524881-73525067:-|nuORF 24.020572477871973 0.15282392193088168 1 VY{I|L}N{I|L}A 6 -1 80.355 0 0 7.6268 0 0 0 377.18010910295897 377.18010910295897 45.789719040763046 0 0 0 0 2.048455006504028 2 0 0.3494850021680094 VY{I|L}N{I|L}A 7.6268 - 545 + NaN NaN 140037.4 NaN 19113 4230 23342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23346 92.769 NaN 761770 35 0 111270 0.261 + 31753 VYLPDVWTI 9 85 553.3003388410533 1104.5861247489065 2 553.3004150390625 MULTI HCD FTMS 0 0 0 23342 111555.671875 0.5271139967816023 -2 0.05577850341796875 4 Unmodified _VYLPDVWTI_ ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 96.28474662873226 0.004361282420133734 1 [YV]{I|L}PDVWT{I|L} 9 0 + 71.92 0 0 6.5111 6.5111 92.211 0 0 0 2.7114406948358294 2.7114406948358294 2.7114406948358294 22.71652514092061 0 2.254432191740108 1.5228787452803376 0.3054621874040891 0 + + [YV]{I|L}PDVWT{I|L};[YV]{I|L}PDV[VG]M{I|L};[Y{I|L}]VPDVWT{I|L};[YV]{I|L}PC(Carbamidomethyl (C)){I|L}VE{I|L};[YV]{I|L}PW[DV]T{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}PTVWT{I|L};[YV][VG]VDP{I|L}M{I|L};[YV]{I|L}PDAA{I|L}M{I|L};[YV]{I|L}P[CG]{I|L}VE{I|L};[YV]{I|L}AADP{I|L}M{I|L} 6.5111;4.4545;3.9919;3.8215;3.7962;3.7206;3.6352;3.3448;2.9879;2.8702 +;-;-;-;-;-;-;-;-;- + 1907 NaN NaN 199522.4 NaN 19114 4230 23342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23347 92.772 NaN 244490 35 0 40667 0.261 -1 SMVCVDVWIL 10 64 590.790306291843 NaN 0 590.8057861328125 PEAK HCD FTMS 0 0 0 23342 7158.29931640625 1 0 0 5 Oxidation (M) _SM(Oxidation (M))VCVDVWIL_ CON__Q2KIU3 10.073929032068715 0.33156240198919784 1 {I|L}S{[CP]|[EA]}{I|L} 5 -1 19.961 0 0 1.6922 0 0 333.1389564935877 330.14546272180377 663.2844192153915 0 0 0 0 0 0 0 0.7742275032520141 0 {I|L}S{[CP]|[EA]}{I|L} 1.6922 - 64 + NaN NaN 115105 NaN 19115 4230 23342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23348 92.775 NaN 170320 35 0 17481 0.261 + -1 VEYISMPAL 9 51 532.7703529432426 1063.5261529532852 2 532.7694091796875 MULTI HCD FTMS 0 0 0 23342 39088.9375 0.43304427271715423 4 -0.1082611083984375 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VEYISMPAL_ REV__ENSG00000074966|ENST00000264316|TXK;REV__TXK|p.P488S|1|0.55|ENSG00000074966|chr4:48071570-48071570|G/A|missense_variant 7.910154910731844 0.2910521888787154 1 {I|L}A{I|L} 3 -1 29.693 0 0 2.7919 0 0 748.309862205275 0 748.309862205275 0 10.400990676322905 0 0 0 0.5 0 0 0 {I|L}A{I|L} 2.7919 - 11 NaN NaN 103353.9 NaN 19116 4230 23342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23350 92.78 NaN 438720 35 0 66871 0.327 + 11446 IYQEVWNLF 9 55 606.3083799907627 1210.6022070483252 2 606.3087768554688 MULTI HCD FTMS 0 0 0 23349 132853.875 0.15840198697186128 6 -0.16413116455078125 1 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 47.7319792270244 0.034743597693959835 1 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F} 10 2 + 81.776 0 0 6.755 6.755 87.408 0 0 0 4.884381005764311 74.32889097984422 4.884381005764311 6.5321251377534395 0 2.7614393726401687 0 0 0.3807196863200844 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]G[W{I|L}]{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WY]{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]G{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAE[WP][KT]{M(Oxidation (M))|F} 6.755;6.2154;5.6835;5.4548;4.0418;4.0229;3.6666;3.2848;2.8217;2.6669 -;+;-;-;-;-;-;-;-;- + 553 NaN NaN 157613.5 NaN 19117 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23351 92.785 NaN 509000 35 0 45477 0.261 + 2813 DYISHFLTF 9 81 571.7799461961537 1141.5453394591073 2 572.7861328125 MULTI HCD FTMS 0 0 0 23349 186438.6875 0.6320313704219466 11 -0.2867279052734375 2 Unmodified _DYISHFLTF_ ENSG00000114841|ENST00000420323|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-6|DNAH1;nc|ENSG00000114841|Q9P2D7-8|DNAH1 14.838274106304384 0.23215694253501695 1 {I|L}T{M(Oxidation (M))|F} 3 6 26.727 0 0 2.3413 0 0 762.3351897602012 0 762.3351897602012 0 2.914478256039672 0 0 0 0.9559771852360797 0 0 0 + {I|L}T{M(Oxidation (M))|F} 2.3413 + + 104 + NaN NaN 176676.2 NaN 19118 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23352 92.788 NaN 176810 35 0 20026 0.261 + 13472 KYPENFFLL 9 57 585.8135101996211 1169.612467466042 2 585.8136596679688 MULTI HCD FTMS 0 0 0 23349 84554.5390625 0.1388608606345153 27 -0.6961669921875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.14443998892849796 1 M[PG][WP]EP{I|L} 8 7 33.365 0 0 2.8526 0 0 244.17852980781407 0 244.17852980781407 0 19.552593986562812 0 0 0 1.6989700043360187 0 0 0 M[PG][WP]EP{I|L} 2.8526 - 134 NaN NaN 105412.4 NaN 19119 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23353 92.792 NaN 102560 35 0 7050.3 0.264 -1 0 44 422.58167378528765 1264.723191956063 3 422.58184814453125 MULTI HCD FTMS 0 0 0 23349 67321.015625 0.15610060592560915 54 -1.2476577758789062 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 95711 NaN 19120 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23354 92.795 NaN 169610 35 0 54819 0.261 -1 DRTCDHICV 9 41 588.2505442091012 1174.4865354850024 2 588.7528686523438 MULTI HCD FTMS 0 0 0 23349 39998.02734375 0.852743504422326 4 -0.10166168212890625 5 2 Carbamidomethyl (C) _DRTC(Carbamidomethyl (C))DHIC(Carbamidomethyl (C))V_ ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3 2.302733041254933 0.33356062215410776 1 [C(Carbamidomethyl (C))D]{I|L} 3 -1 10.458 0 0 0.8904 0 0 0 783.3339937799436 783.3339937799436 1.5051499783199063 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))D]{I|L} 0.8904 - 24 + NaN NaN 117810.5 NaN 19121 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23355 92.798 NaN 224910 35 0 90014 0.262 + 9936 IDLMENRT 8 41 496.2477616864371 990.4809704396743 2 496.2483825683594 MULTI HCD FTMS 0 0 0 23349 40319.09765625 0.6461405989719783 2 -0.0590972900390625 6 Unmodified _IDLMENRT_ REV__ENSG00000107130|ENST00000372398|NCS1;REV__nc|ENSG00000107130|P62166-2|NCS1;REV__NCS1|p.I116M|1|0.14|ENSG00000107130|chr9:130222690-130222690|C/G|missense_variant 20.453626601364224 0.4433031943603284 1 {I|L}D{I|L} 3 -1 43.984 0 0 4.4407 0 0 0 646.2654512994749 646.2654512994749 43.2711470149615 0 0 0 0 0 1.3979400086720375 0.3807196863200844 0 {I|L}D{I|L} 4.4407 + + 10 + NaN NaN 111178 NaN 19122 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23356 92.802 NaN 172780 35 0 14167 0.261 + 26860 SYIPLFPQL 9 47 539.3024627553938 1076.5903725775875 2 539.3021240234375 MULTI HCD FTMS 0 0 0 23349 23909.525390625 0.01253983125076089 18 -0.47673797607421875 7 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 24.020572477871973 0.15282392193088168 1 G{[QG]|[NA]}{M(Oxidation (M))|F}[{I|L}P]{I|L}[MT] 9 8 20.92 0 0 1.9432 0 0 114.10801396259485 0 114.10801396259485 0 6.227496652734249 0 0 0 1.3807196863200843 0 0 0 G{[QG]|[NA]}{M(Oxidation (M))|F}[{I|L}P]{I|L}[MT] 1.9432 - 82 + NaN NaN 107766 NaN 19123 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23357 92.805 NaN 71764 35 0 12713 0.261 + 15364 LPDEELQWVF 10 38 638.316718675458 1274.618884417716 2 638.3162841796875 MULTI HCD FTMS 0 0 0 23349 13435.0966796875 0.19516695774821477 -3 0.078643798828125 8 Unmodified _LPDEELQWVF_ ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-2|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-4|SIGMAR1 4.5288652416199255 0.4513317009562028 1 QWV{M(Oxidation (M))|F} 4 6 28.443 0 0 2.2315 0 0 696.333787986525 0 696.333787986525 0 11.453650195120844 0 0 0 0 0 0 0 + QWV{M(Oxidation (M))|F} 2.2315 + + 19 NaN NaN 95992.6 NaN 19124 4231 23349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23359 92.81 NaN 770170 35 0 132320 0.327 + 20243 NYLPFIMEL 9 75 578.2912249331946 1154.567896933189 2 578.2911987304688 MULTI HCD FTMS 0 0 0 23358 199348.984375 0.09817438754580017 22 -0.5617599487304688 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 114.6490535036381 0.0021834323520089267 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 90.415 0 0 7.8311 7.8311 95.017 0 0 0 19.314658810202104 14.973024840566467 14.973024840566467 29.10276581950272 0 2.5669015600442577 1.154901959985743 0 1.0044321917401078 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{I|L}T]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[YN]{I|L};{[QN]|[E{I|L}]|[KN]}[KQ]{[QG]|[NA]}{I|L}D[QP] 7.8311;5.3104;4.0596;3.7878;0.35301;0.074803 +;-;-;-;-;- + 815 NaN NaN 193107.2 NaN 19125 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23360 92.814 NaN 115470 35 0 8178.2 0.261 -1 0 58 633.3545017534481 632.347225286848 1 633.3695068359375 MULTI HCD FTMS 0 0 0 23358 13178.64453125 0.1232101253869977 17 -0.44718170166015625 2 NaN NaN 1 {[MS]|[{M(Oxidation (M))|F}A]}K 3 -1 7.4473 0 0 1.1777 0 0 0 283.11884485416255 283.11884485416255 4.9730248405664685 0 0 0 0 0 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}K 1.1777 - 3 + NaN NaN 105515.2 NaN 19126 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23361 92.818 NaN 195780 35 0 32942 0.263 + 23406 RLHRPPVI 8 46 494.3141646156356 986.6137762980712 2 494.3145446777344 MULTI HCD FTMS 0 0 0 23358 135619.15625 1 0 0 3 Unmodified _RLHRPPVI_ ENSG00000166033|ENST00000368984|HTRA1 9.347437153973935 0.5250182646323369 1 [QP]{I|L}{I|L}{I|L}AV 7 7 27.211 0 0 2.758 0 0 0 249.12189661197502 249.12189661197502 10.668563304579024 0 0 0 0 0 0 0 0 [QP]{I|L}{I|L}{I|L}AV 2.758 - 65 + NaN NaN 107524 NaN 19127 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23362 92.821 NaN 140270 35 0 43644 0.261 + 25510 SFHTMAQYI 9 35 549.2579768491993 1096.5014007651985 2 549.2589111328125 MULTI HCD FTMS 0 0 0 23358 49426.9921875 0.9749266684798897 -2 0.05242156982421875 4 Unmodified _SFHTMAQYI_ REV__ENSG00000137766|ENST00000260323|UNC13C;REV__ENST00000561210.1_1_15:54556427-54709226:+|nuORF 3.2813086475875832 0.32614229037259 1 G 1 -1 2.7642 0 0 0.25209 0 0 472.20203660679846 564.2521456354124 1036.454182242211 0 0 0 0 0 0 0 0 0 G 0.25209 - 3 + NaN NaN 123616.7 NaN 19128 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23363 92.824 NaN 64563 35 0 9129 0.262 + 8709 HGQQLPET 8 40 455.2253708018938 NaN 0 455.2253723144531 PEAK HCD FTMS 0 0 0 23358 25059.2890625 0.5012321060610524 11 -0.28340911865234375 5 Unmodified _HGQQLPET_ ENST00000524877.5_1_11:61722897-61725974:+|nuORF;ENST00000529265.5_1_11:61717864-61725974:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98705.1 NaN 19129 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23364 92.828 NaN 217630 35 0 62439 0.261 + -1 VGMFVLCPF 9 36 543.2629488067037 1084.5113446802072 2 543.2635498046875 MULTI HCD FTMS 0 0 0 23358 63809.5625 0.9314739794541685 -2 0.05242156982421875 6 Carbamidomethyl (C),Oxidation (M) _VGM(Oxidation (M))FVLC(Carbamidomethyl (C))PF_ REV__tr|U7T3F0|U7T3F0_FUSNUOxaloacetatedecarboxylase,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00407PE=4SV=1 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5666 0 0 919.4326531292292 0 919.4326531292292 0 0.7918124604762511 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5666 + + 20 + NaN NaN 115894.9 NaN 19130 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23365 92.831 NaN 183750 35 0 12849 0.261 + 33117 YDVLVMILI 9 52 539.8145412428973 1077.6145295525946 2 539.8143920898438 MULTI HCD FTMS 0 0 0 23358 25658.740234375 0.13672722892461067 26 -0.6666107177734375 7 Unmodified _YDVLVMILI_ REV__ENSG00000164889|ENST00000413384|SLC4A2;REV__ENST00000472204.1_1_7:150771467-150771665:+|nuORF;REV__nc|ENSG00000164889|P04920-2|SLC4A2;REV__nc|ENSG00000164889|P04920-3|SLC4A2 11.640296217721598 0.25978676193971967 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 9 -1 + 9.3315 0 0 0.86594 0.86594 84.274 0 0 0 2.113037394097434 2.113037394097434 2.113037394097434 9.331524890260997 0 0 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 0.86594 - 100 NaN NaN 115882.5 NaN 19131 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23366 92.834 NaN 228590 35 0 29410 0.261 + -1 SKCCFHMKM 9 47 622.7560049880191 1243.497457042838 2 622.7561645507812 MULTI HCD FTMS 0 0 0 23358 86465.25 0.8132310732975849 -4 0.1082000732421875 8 2 Carbamidomethyl (C),Oxidation (M) _SKC(Carbamidomethyl (C))C(Carbamidomethyl (C))FHM(Oxidation (M))KM_ REV__ENST00000460203.1_1_X:14032428-14038575:-|nuORF 3.944395688203298 0.32111559684428237 1 Y{I|L} 2 -1 17.691 0 0 1.4227 0 0 949.3433705060562 0 949.3433705060562 0 2.7422750325201406 0 0 0 0.4247425010840047 0 0 0 Y{I|L} 1.4227 - 19 NaN NaN 113396.2 NaN 19132 4232 23358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23368 92.839 NaN 1055500 35 0 239520 0.327 + 22419 QPYGGFLDIL 10 58 561.7951658724708 1121.5757788117414 2 561.7953491210938 MULTI HCD FTMS 0 0 0 23367 789627.125 0.3857102226794314 4 -0.10503387451171875 1 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 96.11092074494114 0.0005333825011732249 1 {NN|[MP]|[D{I|L}]|[EV]}HH{M(Oxidation (M))|F}{I|L}D{I|L} 8 5 70.187 0 0 6.2579 0 0 0 128.07219320936045 128.07219320936045 51.99986893552975 0 0 0 0 1.774227503252014 1.5228787452803376 0.7302046884880937 1.6549471895720984 {NN|[MP]|[D{I|L}]|[EV]}HH{M(Oxidation (M))|F}{I|L}D{I|L} 6.2579 - 230 NaN NaN 241096.7 NaN 19133 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23369 92.844 NaN 975810 35 0 232470 0.263 -1 0 70 413.2880764031388 824.5615998730776 2 413.288330078125 MULTI HCD FTMS 0 0 0 23367 356352.09375 0.9100441284853583 -1 0.029541015625 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7711 0 0 659.483015133623 0 659.483015133623 0 2.51558099942997 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7711 - 45 + NaN NaN 227195.3 NaN 19134 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23370 92.847 NaN 605700 35 0 46511 0.261 + 11447 IYQEVWNLF 9 79 606.3083799907627 1210.6022070483252 2 607.2909545898438 MULTI HCD FTMS 0 0 0 23367 38490.8359375 0.19933886117881175 8 -0.2081298828125 3 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 18.1463463914782 0.20357593197100715 1 [Y{I|L}]SQY{I|L}E 7 6 34.063 0 0 2.8137 0 0 0 311.15015561693775 311.15015561693775 1.1723494480782861 0 0 0 0 0 1.154901959985743 1.0356668758921828 0 [Y{I|L}]SQY{I|L}E 2.8137 - 2081 NaN NaN 173266.9 NaN 19135 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23371 92.851 NaN 453920 35 0 46615 0.261 + 5452 FILAYTYTA 9 82 531.7799991395873 1061.5454453459745 2 533.7938232421875 MULTI HCD FTMS 0 0 0 23367 130470.53125 0.7185152219028673 -3 0.08196258544921875 4 Unmodified _FILAYTYTA_ ENST00000265990.10_1_10:93726429-93740242:+|nuORF 13.50788311687929 0.24365122550260465 1 QQ{I|L}A{I|L}E[DV]{M(Oxidation (M))|F} 9 7 + 39.116 0 0 3.6848 3.6848 87.029 0 0 0 23.631674952134112 8.952424927286849 8.952424927286849 16.709412807357754 0 0 0 0.3252574989159953 0 QQ{I|L}A{I|L}E[DV]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[YC]|[HE]}{I|L}A{I|L}[HT];QQ{I|L}A[YT]P{[QN]|[E{I|L}]|[KN]};KA[Y{I|L}][DN]P{[QN]|[E{I|L}]|[KN]} 3.6848;2.1108;2.0946;0.39672 -;-;-;- 235 + NaN NaN 150409.9 NaN 19136 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23372 92.854 NaN 244580 35 0 16697 0.261 -1 LYLEVFSML 9 57 565.7949960561589 1129.5754391791177 2 565.7935791015625 MULTI HCD FTMS 0 0 0 23367 106027.6171875 0.7301415356738977 4 -0.10503387451171875 5 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 24.020572477871973 0.15282392193088168 1 {M(Oxidation (M))|F}V[C(Carbamidomethyl (C))R]A{I|L} 6 -1 31.119 0 0 2.755 0 0 365.1615834480157 0 365.1615834480157 0 13.16061246681059 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}V[C(Carbamidomethyl (C))R]A{I|L} 2.755 - 113 NaN NaN 121315.8 NaN 19137 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23373 92.857 NaN 223590 35 0 38428 0.264 -1 0 53 405.1186809059501 808.2228088787002 2 405.1187438964844 MULTI HCD FTMS 0 0 0 23367 40662.94140625 0.16365804781789228 20 -0.5093002319335938 6 NaN NaN 1 S 1 -1 5.4846 0 0 0.67859 0 0 586.1222820005737 132.04502283267814 718.1673048332518 0 0 0 0 0 0 0 0 0 S 0.67859 - 12 + NaN NaN 117973.5 NaN 19138 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23374 92.861 NaN 104210 35 0 11134 0.261 -1 GMYCLLNFLS 10 43 617.2831706452589 NaN 0 617.300048828125 PEAK HCD FTMS 0 0 0 23367 21052.90625 0.6966797299782156 5 -0.13123321533203125 7 Carbamidomethyl (C),Oxidation (M) _GM(Oxidation (M))YC(Carbamidomethyl (C))LLNFLS_ tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1 3.944395688203298 0.33680843299986807 1 {I|L}{I|L} 2 -1 5.9691 0 0 0.48429 0 0 366.1353587692302 637.2230929010374 1003.3584516702676 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.48429 + + 26 + NaN NaN 101826.7 NaN 19139 4233 23367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23376 92.866 NaN 866680 35 0 168290 0.327 + 22335 QPLIIAVVL 9 47 483.32328102459905 964.6320091159981 2 483.3233642578125 MULTI HCD FTMS 0 0 0 23375 459319.09375 0.3335498040031574 5 -0.13106536865234375 1 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 44.40701690623563 0.04511410083598184 1 AVV{I|L} 4 5 39.469 0 0 4.0916 0 0 564.3636399463368 0 564.3636399463368 0 32.47933455448525 0 0 0 1.3807196863200843 0 0 0 + AVV{I|L} 4.0916 + + 53 NaN NaN 223001 NaN 19140 4234 23375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23377 92.87 NaN 573640 35 0 30700 0.261 -1 0 96 437.2570625673022 1308.7493583021067 3 437.25732421875 MULTI HCD FTMS 0 0 0 23375 372721.96875 0.885602618159397 6 -0.1522674560546875 2 NaN NaN 1 Q 1 -1 9.2917 0 0 0.70997 0 0 678.4047867592313 499.2767733209594 1177.6815600801908 0 0 0 0 0 0.3807196863200844 0 0 0 Q 0.70997 - 76 + NaN NaN 167643.9 NaN 19141 4234 23375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23378 92.874 NaN 655030 35 0 123930 0.261 + 30639 VPDPFFVEL 9 58 531.7799991395873 1061.5454453459745 2 531.7791137695312 MULTI HCD FTMS 0 0 0 23375 279614 0.17181444109182734 -9 0.2393798828125 3 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 49.93300154707207 0.03166451819912738 1 D{I|L}G[RN]{M(Oxidation (M))|F}VE{I|L} 9 5 + 52.106 0 0 4.9085 4.9085 87.441 0 0 0 38.3771376077312 6.672809246458229 6.672809246458229 11.480625354554377 0 2.1549471895720984 0 0.8494850021680094 0 D{I|L}G[RN]{M(Oxidation (M))|F}VE{I|L};D[VP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VE{I|L};D{I|L}G[R{M(Oxidation (M))|F}]NVE{I|L};D{I|L}G[R{M(Oxidation (M))|F}]GGVE{I|L};{[QN]|[E{I|L}]|[KN]}V[TA]C(Carbamidomethyl (C))KE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TA]C(Carbamidomethyl (C))KE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[RN]C(Carbamidomethyl (C))KE{I|L} 4.9085;3.827;3.779;2.9116;2.0408;1.5309;0.99269 -;-;-;-;-;-;- 197 + NaN NaN 182527.5 NaN 19142 4234 23375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23379 92.877 NaN 238660 35 0 28862 0.261 -1 0 67 575.3453608058733 1148.6761686785464 2 575.345458984375 MULTI HCD FTMS 0 0 0 23375 75224.125 0.20386349185163252 10 -0.24707794189453125 4 NaN NaN 1 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 -1 37.423 0 0 3.2579 0 0 544.4236732649122 0 544.4236732649122 0 21.224862742317466 0 0 0 0 0 0.8494850021680094 0 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 3.2579 - 177 + NaN NaN 121669.4 NaN 19143 4234 23375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23381 92.882 NaN 2848300 35 0 322550 0.327 + 27017 SYLQYLEYL 9 89 596.3002766236732 1190.5860003141463 2 596.300537109375 MULTI HCD FTMS 0 0 0 23380 1461187.25 0.6158616743727319 -1 0.016265869140625 1 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 223.81148253027484 4.831502538880383E-24 1 [Y{I|L}]SQY{I|L}EY{I|L} 9 2 + 118.16 0 0 9.9247 9.9247 89.652 0 0 0 1.7204498514065136 16.478174818886373 1.7204498514065136 1.7204498514065136 0 2.6747425010840047 1.0457574905606752 2.368415180652539 1.5669015600442577 [Y{I|L}]SQY{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};[Y{I|L}]QSY{I|L}EY{I|L};[Q{I|L}]YSY{I|L}EY{I|L};[Y{I|L}]SQY{I|L}E{I|L}Y;[Y{I|L}]SYQ{I|L}EY{I|L};[Y{I|L}]SQY{I|L}YE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}E{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}YQ{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}YE{I|L} 9.9247;9.7802;9.0501;8.5488;8.5384;8.4944;8.405;8.3939;8.3499;8.2605 -;+;-;-;-;-;-;-;-;- + 5774 NaN NaN 513970.9 NaN 19144 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23382 92.886 NaN 2015800 35 0 234180 0.262 + 31616 VYINLANLI 9 88 516.8081113986716 1031.601669864143 2 516.8084716796875 MULTI HCD FTMS 0 0 0 23380 640976.1875 0.4361431419173881 3 -0.0886688232421875 2 Unmodified _VYINLANLI_ ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 162.95088124538222 7.661836540310252E-09 1 [YV]{I|L}N{I|L}AN{I|L}{I|L} 9 0 + 103.47 0 0 10.03 10.03 93.813 0 0 0 9.917114474659215 12.839322000954283 9.917114474659215 9.208187539523749 0 2.6549471895720984 1.3010299956639813 0 1.2302046884880937 + + [YV]{I|L}N{I|L}AN{I|L}{I|L};[YV]{I|L}N{I|L}AGG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}VY{I|L}AN{I|L}{I|L};[YV]{I|L}GG{I|L}AN{I|L}{I|L};[YV]{I|L}NA{I|L}N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}VY{I|L}AGG{I|L}{I|L};[YV]{I|L}GGA{I|L}N{I|L}{I|L};[YV]{I|L}NA{I|L}GG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[YV]AN{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}VYA{I|L}N{I|L}{I|L} 10.03;9.137;9.0683;8.768;8.2065;8.1757;7.3139;7.3139;7.2481;7.2452 +;-;-;-;-;-;-;-;-;- + 1762 NaN NaN 380554 NaN 19145 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23383 92.89 NaN 2887100 35 0 649110 0.261 + 5559 FLLALEPEL 9 76 522.8021825459961 1043.589812158792 2 522.80224609375 MULTI HCD FTMS 0 0 0 23380 820792.6875 0.6794640046639063 2 -0.062469482421875 3 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 100.37149154755038 0.004254194004462789 1 PE{I|L}A{I|L}E{I|L} 7 4 67.625 0 0 6.4801 0 0 260.13676650215 0 260.13676650215 0 39.82647632873771 0 0 0 2.1307196863200843 0 0.4247425010840047 0 PE{I|L}A{I|L}E{I|L} 6.4801 - 491 NaN NaN 518451.8 NaN 19146 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23384 92.893 NaN 168870 35 0 9882.6 0.261 + 388 AIRRPEQATRR 11 68 451.93240636375714 1352.7753896914714 3 451.93243408203125 MULTI HCD FTMS 0 0 0 23380 92422.8125 0.3437662074097459 17 -0.45046234130859375 4 Unmodified _AIRRPEQATRR_ REV__ENST00000597578.1_1_16:86524111-86542471:-|nuORF;REV__ENST00000599749.5_1_16:86524596-86542567:-|nuORF 0.8449412413469082 0.4152150412513042 1 Q 1 -1 8.2268 0 0 0.60814 0 0 722.4283570760402 499.27573572330317 1221.7040927993435 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.60814 + + 19 + NaN NaN 105726 NaN 19147 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23385 92.897 NaN 219470 35 0 30327 0.261 + -1 LYDALCLFMV 10 49 630.803529897614 1259.592506862028 2 630.803466796875 MULTI HCD FTMS 0 0 0 23380 32669.4140625 0.09937148858581867 6 -0.16556549072265625 5 Carbamidomethyl (C),Oxidation (M) _LYDALC(Carbamidomethyl (C))LFM(Oxidation (M))V_ REV__ENSG00000170540|ENST00000304414|ARL6IP1;REV__ENST00000569976.5_1_16:18806770-18812824:-|nuORF;REV__nc|ENSG00000170540|Q15041-2|ARL6IP1;REV__nc|ENSG00000170540|Q15041-3|ARL6IP1 10.823927491677226 0.4098686510432541 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0617 0 0 981.429094684599 0 981.429094684599 0 4.854771935914002 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.0617 + + 33 NaN NaN 114647.1 NaN 19148 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23386 92.9 NaN 392860 35 0 58516 0.263 + 6300 FPFPVTVSL 9 50 503.7840434038367 1005.5535338744734 2 503.7839660644531 MULTI HCD FTMS 0 0 0 23380 31814.2578125 0.05989664751452649 -8 0.21654510498046875 6 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 54.773552608820026 0.024892918755467567 1 TVS{I|L} 4 5 48.686 0 0 4.8417 0 0 587.3106042950537 0 587.3106042950537 0 34.0815315012393 0 0 0 1.25 0 0.4247425010840047 0 + TVS{I|L} 4.8417 + + 56 NaN NaN 145844.2 NaN 19149 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23387 92.903 NaN 216010 35 0 23659 0.261 + 32305 VYVATFLGF 9 62 508.7762536706323 1015.5379544080646 2 508.7762145996094 MULTI HCD FTMS 0 0 0 23380 50987.96875 0.32810015448677765 3 -0.0886688232421875 7 Unmodified _VYVATFLGF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 101.72198241140316 0.004218805956062179 1 [YV]{I|L}GT{M(Oxidation (M))|F}{I|L}G{M(Oxidation (M))|F} 9 2 + 82.092 0 0 8.0836 8.0836 95.936 0 0 0 15.44286205805598 60.04100322985387 15.44286205805598 38.953650195120844 0 2.3494850021680094 1.3010299956639813 1.1307196863200843 0 [YV]{I|L}GT{M(Oxidation (M))|F}{I|L}G{M(Oxidation (M))|F};N{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}P{I|L}G{M(Oxidation (M))|F};[YV]{I|L}G{[VA]|[{I|L}G]}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};N{NN|[MP]|[D{I|L}]|[EV]}A{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}P{M(Oxidation (M))|F};N{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}G{I|L}P{M(Oxidation (M))|F};[YV]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YV]Y[KT][VP]{M(Oxidation (M))|F} 8.0836;4.2479;2.7877;2.5936;2.3235;2.2013;1.9553 -;-;-;-;-;-;- 500 NaN NaN 121106.1 NaN 19150 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23388 92.907 NaN 51324 35 0 9779.1 0.261 -1 0 33 641.8824831880886 1281.750413442977 2 641.8829956054688 MULTI HCD FTMS 0 0 0 23380 43999.8125 0.022566038800289383 57 -1.2981414794921875 8 NaN NaN 1 H 1 -1 5.4846 0 0 0.4279 0 0 671.4011835619209 470.2542818658813 1141.6554654278023 0 0 0 0 0 0 0 0 0 H 0.4279 - 1 + NaN NaN 106092.9 NaN 19151 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23389 92.91 NaN 85839 35 0 7567.7 0.264 -1 MFHVSFRYIF 10 51 454.89426098013695 NaN 0 454.8942565917969 PEAK HCD FTMS 0 0 0 23380 28596.537109375 0.8027188793908527 1 -0.0329437255859375 9 Oxidation (M) _M(Oxidation (M))FHVSFRYIF_ ENSG00000104432|ENST00000263851|IL7;ENST00000521323.1_1_8:79710258-79717217:-|nuORF;nc|ENSG00000104432|P13232-2|IL7 2.0860074813731053 0.33839895573887124 1 R 1 -1 2.7642 0 0 0.3045 0 0 601.7025406596896 146.94513879947502 748.6476794591646 0 0 0 0 0 0 0 0 0 R 0.3045 + + 4 + NaN NaN 95796.5 NaN 19152 4235 23380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23391 92.915 NaN 232270 35 0 12874 0.327 + 11833 KENRQQIVRAR 11 60 466.6078790432832 1396.8018077300496 3 466.6080017089844 MULTI HCD FTMS 0 0 0 23390 89278.3828125 0.5736705380798849 -3 0.07550811767578125 1 Unmodified _KENRQQIVRAR_ ENSG00000258890|ENST00000556440|CEP95;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;ENST00000580285.1_1_17:62529306-62530930:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95 0.5059551277355931 0.4167017191902429 1 V{M(Oxidation (M))|F} 2 10 10.969 0 0 0.7853 0 0 595.3958463899862 552.2473848932249 1147.6432312832112 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.7853 - 10 + NaN NaN 125432.7 NaN 19153 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23392 92.919 NaN 241120 35 0 41308 0.261 + 31754 VYLPDVWTI 9 60 553.3003388410533 1104.5861247489065 2 553.3002319335938 MULTI HCD FTMS 0 0 0 23390 116797.71875 0.5518833001541276 4 -0.103057861328125 2 Unmodified _VYLPDVWTI_ ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 46.020951573049366 0.037705236580089195 1 [YV]{I|L}[DP]VWT{I|L} 9 0 + 53.284 0 0 4.8239 4.8239 90.241 0 0 0 21.640749640939916 20.8366748685809 20.8366748685809 36.64320017660792 0 1.3494850021680094 1.5228787452803376 0 0 + + [YV]{I|L}[DP]VWT{I|L};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V][TP]WT{I|L} 4.8239;1.5065 +;- + 130 NaN NaN 118274.7 NaN 19154 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23393 92.923 NaN 188670 35 0 28419 0.261 + -1 PQLDRGTIL 9 47 527.7989745102805 1053.5833960873608 2 527.7992553710938 MULTI HCD FTMS 0 0 0 23390 166245.953125 0.7530731298523615 4 -0.103057861328125 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PQLDRGTIL_ REV__ENST00000554737.2_1_14:73524881-73525067:-|nuORF 18.1463463914782 0.20357593197100715 1 VY{I|L}N{I|L}A 6 -1 64.837 0 0 6.1539 0 0 0 377.18036829166255 377.18036829166255 39.62009022935278 0 0 0 0 1.863364334130467 2 0 0.3807196863200844 VY{I|L}N{I|L}A 6.1539 - 252 + NaN NaN 114217.4 NaN 19155 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23394 92.926 NaN 151440 35 0 28510 0.261 + 28938 TWYPVSIPAF 10 47 590.8052199146704 1179.5958868961407 2 590.805908203125 MULTI HCD FTMS 0 0 0 23390 84647.1328125 0.05559493127324094 35 -0.902252197265625 4 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 29.081581746732265 0.240155558137004 1 [W{M(Oxidation (M))|F}]{I|L}S 4 8 34.253 0 0 2.9037 0 0 0 643.2873629205686 643.2873629205686 32.26280941356464 0 0 0 0 1.4247425010840047 0 0.3807196863200844 0 [W{M(Oxidation (M))|F}]{I|L}S 2.9037 - 27 + NaN NaN 114718.3 NaN 19156 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23395 92.929 NaN 335610 35 0 67150 0.261 + 6100 FPEGLFYEF 9 70 574.7685864343971 1147.522619935594 2 574.7689819335938 MULTI HCD FTMS 0 0 0 23390 133801.640625 0.041310996942082026 -20 0.5210342407226562 5 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 52.268347100219714 0.028397529699942435 1 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 61.428 0 0 5.3531 0 0 543.2692693579903 0 543.2692693579903 0 35.48577533287428 0 0 0 2 0 1.25 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5.3531 + + 212 + NaN NaN 130463.7 NaN 19157 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23396 92.933 NaN 298680 35 0 20907 0.261 -1 LYLEVFSML 9 61 565.7949960561589 1129.5754391791177 2 566.2977905273438 MULTI HCD FTMS 0 0 0 23390 67298.8984375 0.41094560348653053 7 -0.1783599853515625 6 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 18.1463463914782 0.20357593197100715 1 {M(Oxidation (M))|F}V[QT]SA{I|L} 7 -1 40.438 0 0 3.5799 0 0 365.161211200511 0 365.161211200511 0 14.277807052660805 0 0 0 1.4247425010840047 0 0.3494850021680094 0 {M(Oxidation (M))|F}V[QT]SA{I|L} 3.5799 - 420 NaN NaN 137914.5 NaN 19158 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23397 92.936 NaN 102480 35 0 6145.9 0.261 + 33795 YLGTEAFEYL 10 48 603.2890158693268 1204.5634788054535 2 603.2889404296875 MULTI HCD FTMS 0 0 0 23390 31598.953125 0.5756211636021974 1 -0.0295257568359375 7 Unmodified _YLGTEAFEYL_ tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1 13.90604991867851 0.3810395177745597 1 Y{I|L}EY{I|L} 5 5 36.727 0 0 3.049 0 0 505.21553237129064 0 505.21553237129064 0 2.781964799699992 0 0 0 1.305462187404089 0 0 0 Y{I|L}EY{I|L} 3.049 - 211 NaN NaN 101325.5 NaN 19159 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23398 92.939 NaN 81102 35 0 8979.5 0.261 + 14347 LDWKELVF 8 46 525.2870899377024 NaN 0 525.2876586914062 PEAK HCD FTMS 0 0 0 23390 14306.00390625 0.48031055475813533 1 -0.0295257568359375 8 Unmodified _LDWKELVF_ REV__ENSG00000140598|ENST00000268206|EFL1;REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1 7.910154910731844 0.38822285293237185 1 K 1 -1 3.9794 0 0 0.37951 0 0 770.5272915923985 146.90902124576408 917.4363128381625 0 0 0 0 0 0 0 0 0 K 0.37951 + + 2 + NaN NaN 106579.3 NaN 19160 4236 23390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23400 92.944 NaN 765610 35 0 205580 0.327 -1 0 61 518.8102678258057 1035.6059827184113 2 518.8106689453125 MULTI HCD FTMS 0 0 0 23399 535920.1875 0.1508366665648743 8 -0.201202392578125 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4102 0 0 870.527245391066 0 870.527245391066 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4102 - 12 + NaN NaN 191531.3 NaN 19161 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23401 92.949 NaN 1140400 35 0 142640 0.261 + 5087 FEFEPFLQ 8 82 528.7555912140499 1055.4966294948997 2 528.7556762695312 MULTI HCD FTMS 0 0 0 23399 420876.5625 0.1788849257255757 -6 0.16413116455078125 2 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 92.8221339359638 0.028586293957039193 1 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 64.377 0 0 6.0992 6.0992 89.684 0 0 0 7.3461206056402375 30.0428484529253 7.3461206056402375 12.149392758355177 0 2.048455006504028 0 0.8609243748081781 0.28872548999643577 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]PQ{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE[Q{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PEE{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{M(Oxidation (M))|F}EE;[{M(Oxidation (M))|F}E]P[AG]{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[QP]{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[EP]{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.0992;4.9481;3.0849;3.068;2.7186;2.6025;2.2074;1.712;1.5682;1.3096 -;-;-;-;-;-;-;-;-;- 953 NaN NaN 254648.1 NaN 19162 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23402 92.952 NaN 322240 35 0 40176 0.261 -1 MPPWENIWL 9 51 601.2890127635567 1200.5634725939133 2 601.28955078125 MULTI HCD FTMS 0 0 0 23399 146582.53125 0.34852183038564283 12 -0.3126068115234375 3 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 6.2057823575117 0.30397260197431997 1 W{I|L} 2 -1 25.969 0 0 2.1631 0 0 883.3890700716117 0 883.3890700716117 0 -3.2711470149614996 -3.2711470149614996 0 0 0.5 0 0 0 W{I|L} 2.1631 + + 40 NaN NaN 132328 NaN 19163 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23403 92.956 NaN 166960 35 0 14825 0.261 + 13473 KYPENFFLL 9 50 585.8135101996211 1169.612467466042 2 585.8135375976562 MULTI HCD FTMS 0 0 0 23399 82213.7890625 0.13501673158911914 33 -0.8399734497070312 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 23.789781309258295 0.1548179064208189 1 EPTC(Carbamidomethyl (C))C(Carbamidomethyl (C))M{I|L}{I|L} 8 6 29.213 0 0 2.4977 0 0 147.17901880301116 0 147.17901880301116 0 3.2441718555279664 0 0 0 0.8494850021680094 0 0.3807196863200844 0 EPTC(Carbamidomethyl (C))C(Carbamidomethyl (C))M{I|L}{I|L} 2.4977 - 326 + NaN NaN 109244.3 NaN 19164 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23404 92.959 NaN 458360 35 0 84958 0.261 + 31281 VWFNIGSVDTF 11 56 642.8165858427049 1283.6186187522096 2 642.81689453125 MULTI HCD FTMS 0 0 0 23399 206641.078125 0.6847681693321047 -2 0.062469482421875 5 Unmodified _VWFNIGSVDTF_ ENSG00000141385|ENST00000269143|AFG3L2 171.46415876497497 8.208798721701272E-09 1 {[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}GSVDT{M(Oxidation (M))|F} 11 0 + 115.47 0 0 8.9956 8.9956 92.109 0 0 0 7.367585652254178 86.08404526093966 7.367585652254178 9.128498242810991 0 3.2302046884880937 0 0.6109243748081782 1.836696871556164 + + {[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}GSVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{I|L}GSVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}NVV{[SA]|[TG]}DT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}G[YT]{[DA]|[EG]}V;{[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}{[CA]|SS}[{I|L}A]T{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}{[CA]|SS}[PS]T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NEWV;{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}K[{M(Oxidation (M))|F}V]NEWV 8.9956;8.2845;6.7866;6.0727;4.9315;4.1891;4.0143;4.0143;3.8357;3.6628 +;-;-;-;-;-;-;-;-;- + 940 NaN NaN 152785.3 NaN 19165 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23405 92.962 NaN 197010 35 0 38982 0.264 -1 SYKWNHTMF 9 51 410.517957131945 1228.532041996035 3 410.8525085449219 MULTI HCD FTMS 0 0 0 23399 34632.10546875 0.5254341142781487 1 -0.0261993408203125 6 Oxidation (M) _SYKWNHTM(Oxidation (M))F_ L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|21|2|anti-sense 6.630372943996041 0.3007538891620783 1 SY 2 -1 44.464 0 0 3.6193 0 0 0 975.4137615142536 975.4137615142536 26.505149978319906 0 0 0 0 0.3494850021680094 2 0 0 SY 3.6193 + + 16 + NaN NaN 115922.5 NaN 19166 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23406 92.966 NaN 97809 35 0 26009 0.261 + 15365 LPDEELQWVF 10 32 638.316718675458 1274.618884417716 2 638.316162109375 MULTI HCD FTMS 0 0 0 23399 52191.53125 0.7581681484796214 3 -0.0735321044921875 7 Unmodified _LPDEELQWVF_ ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-2|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-4|SIGMAR1 7.608950283845883 0.4350283211712914 1 WV{M(Oxidation (M))|F} 3 7 31.198 0 0 2.4476 0 0 824.3935965471331 0 824.3935965471331 0 26.593793813122062 0 0 0 0.5 0 0 0 + WV{M(Oxidation (M))|F} 2.4476 + + 11 NaN NaN 96509.3 NaN 19167 4237 23399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23408 92.971 NaN 502830 35 0 82477 0.327 + 20244 NYLPFIMEL 9 69 578.2912249331946 1154.567896933189 2 578.291259765625 MULTI HCD FTMS 0 0 0 23407 174319.984375 0.0858482312145418 28 -0.7021560668945312 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 92.65332237495696 0.004456439685314431 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 85.051 0 0 7.3665 7.3665 94.271 0 0 0 13.005449460410688 13.005449460410688 13.005449460410688 28.463024366017443 0 2.4361818737241734 1.2218487496163564 0 0.28872548999643577 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[RN][NG]{I|L}D[QP];{[QN]|[E{I|L}]|[KN]}[KQ]{[QG]|[NA]}{I|L}D[QP] 7.3665;4.9012;0.70447;0.099079 +;-;-;- + 572 NaN NaN 156062.7 NaN 19168 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23409 92.975 NaN 416700 35 0 106480 0.261 + 30620 VPDFSFPYL 9 48 542.7706181215256 1083.526683309851 2 542.7701416015625 MULTI HCD FTMS 0 0 0 23407 148063.84375 0.615057238228537 -6 0.16077423095703125 2 Unmodified _VPDFSFPYL_ REV__ENSG00000042781|ENST00000307340|USH2A;REV__nc|ENSG00000042781|O75445-3|USH2A 20.453626601364224 0.18364154288633264 1 VPD{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V[YT] 9 -1 + 60.49 0 0 5.5827 5.5827 92.372 0 0 0 35.964307978057576 5.6424927368725974 5.6424927368725974 60.489926805186855 0 2.0189301784845295 1.2218487496163564 0 0 VPD{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V[YT] 5.5827 - 67 + NaN NaN 139579.8 NaN 19169 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23410 92.978 NaN 62200 35 0 5973.7 0.261 + -1 RPRRCLIHAS 10 36 633.3543772996262 NaN 0 633.3693237304688 PEAK HCD FTMS 0 0 0 23407 8446.833984375 1 0 0 3 Carbamidomethyl (C) _RPRRC(Carbamidomethyl (C))LIHAS_ REV__ENSG00000170291|ENST00000396628|ELP5;REV__nc|ENSG00000170291|Q8TE02-1|ELP5;REV__nc|ENSG00000170291|Q8TE02-2|ELP5 1.6526216038709556 0.33876987398426067 1 K 1 -1 0.9691 0 0 0.076627 0 0 718.3711558670274 415.19733606510005 1133.5684919321275 0 0 0 0 0 0 0 0 0 K 0.076627 - 1 + NaN NaN 86930.4 NaN 19170 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23411 92.982 NaN 175410 35 0 23964 0.261 + -1 YNHCDPYLY 9 44 622.7560049880191 1243.497457042838 2 622.7559204101562 MULTI HCD FTMS 0 0 0 23407 80700.6328125 0.7590131554341619 2 -0.047332763671875 4 Carbamidomethyl (C) _YNHC(Carbamidomethyl (C))DPYLY_ REV__ENSG00000106302|ENST00000223026|HYAL4 7.289230182591677 0.29575926068275815 1 [YN]{I|L} 3 -1 21.427 0 0 1.7231 0 0 0 850.2844498009036 850.2844498009036 3.9916623986031396 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L} 1.7231 - 29 NaN NaN 120727.8 NaN 19171 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23412 92.985 NaN 212190 35 0 40351 0.261 + 15591 LPDWPEVYF 9 49 583.2820546354186 1164.5495563376371 2 583.2822265625 MULTI HCD FTMS 0 0 0 23407 70944.0703125 0.45598774972808975 -7 0.19033050537109375 5 Unmodified _LPDWPEVYF_ ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1 20.453626601364224 0.18364154288633264 1 YY[KG][EP]VY{M(Oxidation (M))|F} 9 4 + 38.618 0 0 3.3161 3.3161 88.508 0 0 0 1.8869505380473512 24.01409360265547 1.8869505380473512 38.618187372417346 0 1.5 0 0 0.3494850021680094 YY[KG][EP]VY{M(Oxidation (M))|F} 3.3161 - 83 NaN NaN 117147.5 NaN 19172 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23413 92.988 NaN 418670 35 0 60634 0.261 + 17786 MFCHLWEI 8 78 539.7465249798657 1077.4784970265314 2 539.7467041015625 MULTI HCD FTMS 0 0 0 23407 88903.25 0.3340632872255642 -6 0.16077423095703125 6 Unmodified _MFCHLWEI_ ENST00000380693.7_1_X:11777873-11777969:+|nuORF 8.593279151180031 0.5292430274356741 1 {M(Oxidation (M))|F}EP{M(Oxidation (M))|F}Q{I|L} 6 6 20.684 0 0 1.9197 0 0 298.0927906720719 0 298.0927906720719 0 -1.2700528115977505 -1.2700528115977505 0 0 1.3226825097560422 0 0 0 {M(Oxidation (M))|F}EP{M(Oxidation (M))|F}Q{I|L} 1.9197 - 298 NaN NaN 162211.1 NaN 19173 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23414 92.992 NaN 94214 35 0 21226 0.261 + -1 LEMKYHNF 8 40 549.2579768491993 1096.5014007651985 2 549.2578735351562 MULTI HCD FTMS 0 0 0 23407 23468.916015625 0.46291451474836137 4 -0.09639739990234375 7 Oxidation (M) _LEM(Oxidation (M))KYHNF_ REV__ENSG00000071205|ENST00000336498|ARHGAP10 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3319 0 0 931.4224498148063 0 931.4224498148063 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3319 + + 6 + NaN NaN 108939.3 NaN 19174 4238 23407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23416 92.997 NaN 341260 35 0 26923 0.327 + 2321 DMPPLTLEGIQ 11 72 607.3119580481398 NaN 0 607.2914428710938 PEAK HCD FTMS 0 0 0 23415 16936.40625 1 0 0 1 Unmodified _DMPPLTLEGIQ_ ENSG00000004779|ENST00000007516|NDUFAB1 8.745405648335112 0.31731194618894887 1 {M(Oxidation (M))|F}CQY{I|L}E 6 8 20.667 0 0 1.7043 0 0 113.13315909963588 313.11652551822505 426.2496846178609 0 0 0 0 0 0 0 0.7302046884880938 0 {M(Oxidation (M))|F}CQY{I|L}E 1.7043 - 549 + NaN NaN 130101.3 NaN 19175 4239 23415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23417 93.001 NaN 182710 35 0 44558 0.261 + 22420 QPYGGFLDIL 10 33 561.7951658724708 1121.5757788117414 2 561.795166015625 MULTI HCD FTMS 0 0 0 23415 133925.546875 0.06541879182230585 10 -0.26027679443359375 2 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 16.149105407346934 0.3600587335443843 1 {I|L}D{I|L}{I|L} 4 6 41.186 0 0 3.6721 0 0 649.2874623029312 0 649.2874623029312 0 41.18562527100117 0 0 0 0.9247425010840047 0 0 0 + {I|L}D{I|L}{I|L} 3.6721 + + 16 NaN NaN 108642.9 NaN 19176 4239 23415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23418 93.005 NaN 227560 35 0 22625 0.362 + -1 MDFLTCNFI 9 58 588.7565360496195 1175.498519166039 2 588.7567749023438 MULTI HCD FTMS 0 0 0 23415 182354.0625 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DFLTC(Carbamidomethyl (C))NFI_ REV__ENSG00000136114|ENST00000258613|THSD1;REV__nc|ENSG00000136114|Q9NS62-2|THSD1;REV__nc|ENSG00000136114|Q9NS62-3|THSD1 19.256988751693697 0.19398022840297344 1 {I|L}{I|L}N{M(Oxidation (M))|F}{I|L} 5 -1 57.875 0 0 4.9235 0 0 557.1244374005875 0 557.1244374005875 0 47.417665879116626 0 0 0 1.8494850021680094 0 0 0.3807196863200844 {I|L}{I|L}N{M(Oxidation (M))|F}{I|L} 4.9235 - 118 NaN NaN 126039.7 NaN 19177 4239 23415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23419 93.01 NaN 45008 35 0 6566.3 0.261 -1 GLSGQYSTMLY 11 30 618.2822320158598 1234.5499110985195 2 618.2820434570312 MULTI HCD FTMS 0 0 0 23415 8598.986328125 0.20885821280697692 2 -0.0507659912109375 4 Oxidation (M) _GLSGQYSTM(Oxidation (M))LY_ ENSG00000183876|ENST00000328668|ARSI;nc|ENSG00000183876|Q5FYB1-2|ARSI 1.1933415558491238 0.4136870758253112 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96103.3 NaN 19178 4239 23415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23420 93.013 NaN 199660 35 0 54700 0.261 + 10901 IWPPFQPPAW 10 42 619.8211691983357 1237.6277854634714 2 619.821533203125 MULTI HCD FTMS 0 0 0 23415 102376.0390625 0.9958038964079612 -2 0.05233001708984375 5 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 30.636539890814138 0.2266618088935899 1 Q[HQ]W 4 8 29.253 0 0 2.3636 0 0 640.3373280255875 0 640.3373280255875 0 21.15356566548286 0 0 0 1.305462187404089 0 0 0 Q[HQ]W 2.3636 - 42 NaN NaN 130723.2 NaN 19179 4239 23415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23422 93.018 NaN 2057700 35 0 437930 0.327 + 30640 VPDPFFVEL 9 72 531.7799991395873 1061.5454453459745 2 531.7789916992188 MULTI HCD FTMS 0 0 0 23421 1406189.5 0.8640613953939936 -3 0.0735321044921875 1 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 68.08070601005525 0.009709267492204555 1 DPV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VE{I|L} 9 2 + 49.459 0 0 4.6592 4.6592 83.46 0 0 0 18.551434250963936 4.026355914538229 4.026355914538229 5.8927186071611715 0 2.309894379144197 0 1.6237125054200234 0 DPV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VE{I|L};{[QN]|[E{I|L}]|[KN]}VMTEVE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}VVDE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}VVDE{I|L};{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F}S[EP]E{I|L};{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F}VVDE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PTEG[RK];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[YV][RH];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PTEG[KG]V;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[YV]{[HG]|PP}V 4.6592;4.1041;3.704;3.4204;3.3333;3.2156;2.2601;2.1823;2.0794;1.9964 -;-;-;-;-;-;-;-;-;- 1010 + NaN NaN 393188.2 NaN 19180 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23423 93.022 NaN 1681300 35 0 195500 0.261 + 27018 SYLQYLEYL 9 75 596.3002766236732 1190.5860003141463 2 596.3005981445312 MULTI HCD FTMS 0 0 0 23421 707135.875 0.2980438571350297 4 -0.09481048583984375 2 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 179.17365725063826 1.1335045685127237E-12 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 113.55 0 0 9.5377 9.5377 94.889 0 0 0 11.651051905782495 16.478174818886373 11.651051905782495 11.651051905782495 0 2.8494850021680094 0 2.079689690656103 1.5669015600442577 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};[YV]TQY{I|L}EY{I|L};[YE][KA]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}EY{I|L};[YV]T[AG]Y{I|L}EY{I|L};[YE]{I|L}Y[KA]EY{I|L};[YE]{I|L}Y{I|L}QSY{I|L};[YE]{I|L}{I|L}YQSY{I|L};[YE]{I|L}Y{I|L}[AG]SY{I|L};[YE]{I|L}{I|L}Y[AG]SY{I|L} 9.5377;8.5591;7.817;7.4482;6.4696;6.0478;5.2855;4.8848;3.8725;3.4718 +;-;-;-;-;-;-;-;-;- + 1599 NaN NaN 347097.5 NaN 19181 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23424 93.026 NaN 489550 35 0 24505 0.264 -1 0 97 437.2570625673022 1308.7493583021067 3 437.2573547363281 MULTI HCD FTMS 0 0 0 23421 330069.0625 0.7842575711427464 12 -0.31446075439453125 3 NaN NaN 1 N{[HG]|PP}{[SA]|[TG]} 5 -1 11.963 0 0 0.91406 0 0 824.463182517775 0 824.463182517775 0 0.35158431283704594 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}{[SA]|[TG]} 0.91406 - 59 NaN NaN 170265.9 NaN 19182 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23425 93.029 NaN 258850 35 0 48783 0.261 + 22336 QPLIIAVVL 9 39 483.32328102459905 964.6320091159981 2 483.3233947753906 MULTI HCD FTMS 0 0 0 23421 105763.2890625 0.07680352246956022 11 -0.2982177734375 4 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 30.224811164608877 0.11021837014094292 1 V{I|L} 2 7 25.969 0 0 2.6921 0 0 734.4687163864701 0 734.4687163864701 0 13.561062652429923 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 24 NaN NaN 119994.7 NaN 19183 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23426 93.033 NaN 182380 35 0 49364 0.261 + 10902 IWPPFQPPAW 10 39 619.8211691983357 1237.6277854634714 2 619.8204956054688 MULTI HCD FTMS 0 0 0 23421 78198.1484375 0.7606274048013462 -1 0.02120208740234375 5 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 19.256988751693697 0.33098864134661865 1 Q[HK]W 4 8 21.995 0 0 1.7772 0 0 640.3384876935562 0 640.3384876935562 0 16.510234424404686 0 0 0 0.8807196863200843 0 0 0 Q[HK]W 1.7772 - 11 NaN NaN 122478.1 NaN 19184 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23427 93.036 NaN 250180 35 0 48019 0.261 + -1 CIYMFMYI 8 59 558.235339675462 1114.456126417724 2 558.2342529296875 MULTI HCD FTMS 0 0 0 23421 78230.3671875 0.6622886399641893 -2 0.047332763671875 6 2 Oxidation (M) _CIYM(Oxidation (M))FM(Oxidation (M))YI_ REV__ENST00000372067.7_1_6:43753877-43754102:+|nuORF 6.354104778181461 0.5325651638111438 1 C{I|L}A 3 -1 21.682 0 0 1.9456 0 0 0 824.3040865533811 824.3040865533811 6.2763625255165305 0 0 0 0 0 0 0 0 C{I|L}A 1.9456 - 16 + NaN NaN 117787.6 NaN 19185 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23428 93.039 NaN 206430 35 0 25738 0.261 -1 CFMASFSTVCI 11 45 612.7566265983611 1223.498700263522 2 612.7567749023438 MULTI HCD FTMS 0 0 0 23421 28586.5390625 0.3940085047621909 1 -0.02956390380859375 7 Oxidation (M) _CFM(Oxidation (M))ASFSTVCI_ ENST00000440896.2_1_11:59856214-59861079:+|nuORF 4.897010918128616 0.3974440401582579 1 {M(Oxidation (M))|F}{[RE]|[WV]}A{M(Oxidation (M))|F} 5 -1 28.478 0 0 2.3276 0 0 555.1822376935562 0 555.1822376935562 0 24.498147274412183 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}{[RE]|[WV]}A{M(Oxidation (M))|F} 2.3276 - 14 NaN NaN 111191 NaN 19186 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23429 93.043 NaN 115200 35 0 12232 0.261 -1 AKNPPENCE 9 48 550.7372997541942 1099.4600465751882 2 550.7518310546875 MULTI HCD FTMS 0 0 0 23421 25289.552734375 1 0 0 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))AKNPPENC(Carbamidomethyl (C))E_ ENSG00000000005|ENST00000373031|TNMD;nc|ENSG00000000005|Q9H2S6-2|TNMD 1.844237919475145 0.33703635659052655 1 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.41876 0 0 151.10082188332257 785.3180636041624 936.4188854874849 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.41876 + + 9 + NaN NaN 102727.9 NaN 19187 4240 23421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23431 93.047 NaN 962940 35 0 201860 0.327 + 5560 FLLALEPEL 9 52 522.8021825459961 1043.589812158792 2 522.8025512695312 MULTI HCD FTMS 0 0 0 23430 316427.125 0.26194293006147973 8 -0.20951080322265625 1 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 52.268347100219714 0.028397529699942435 1 E{I|L}A{I|L}E{I|L} 6 4 55.232 0 0 5.2925 0 0 357.1896534632897 0 357.1896534632897 0 46.64803642605092 0 0 0 2.138210492164445 0 0.3494850021680094 0 E{I|L}A{I|L}E{I|L} 5.2925 - 225 NaN NaN 233281 NaN 19188 4241 23430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23432 93.052 NaN 999380 35 0 128810 0.261 + 6301 FPFPVTVSL 9 64 503.7840434038367 1005.5535338744734 2 503.78411865234375 MULTI HCD FTMS 0 0 0 23430 362035.65625 0.6816038965264335 -2 0.0507659912109375 2 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 123.09622228370866 0.0010236603636890153 1 {[TV]|[{I|L}S]}V[C(Carbamidomethyl (C))K]TVS{I|L} 9 5 + 72.201 0 0 7.1802 7.1802 87.745 0 0 0 5.497033944436069 16.478174818886373 5.497033944436069 5.497033944436069 0 1.3807196863200843 1.5228787452803376 1.274227503252014 0 {[TV]|[{I|L}S]}V[C(Carbamidomethyl (C))K]TVS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[VP]TVS{I|L};{[TV]|[{I|L}S]}VT[C(Carbamidomethyl (C))K]VS{I|L};[VS]{I|L}[C(Carbamidomethyl (C))K]TVS{I|L};[VS]{I|L}T[C(Carbamidomethyl (C))K]VS{I|L} 7.1802;6.6336;5.9879;5.1913;3.9989 -;+;-;-;- + 172 NaN NaN 248403.5 NaN 19189 4241 23430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23433 93.055 NaN 171900 35 0 9491.6 0.261 + 11972 KFQVMYRRIL 10 59 451.93240636375714 1352.7753896914714 3 451.9324035644531 MULTI HCD FTMS 0 0 0 23430 69652.7421875 0.2590730401921677 23 -0.5661544799804688 3 Unmodified _KFQVMYRRIL_ ENSG00000135966|ENST00000393359|TGFBRAP1 1.7422754331352037 0.46608156381052757 1 V 1 9 1.9897 0 0 0.14708 0 0 850.4764222615871 400.20224939517817 1250.6786716567653 0 0 0 0 0 0 0 0 0 + V 0.14708 + + 5 + NaN NaN 109991.6 NaN 19190 4241 23430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23434 93.059 NaN 174690 35 0 41574 0.261 + -1 EFAHQRMC 8 35 547.7288201751354 1093.4430874170707 2 547.7285766601562 MULTI HCD FTMS 0 0 0 23430 46758.97265625 0.5502804567848862 -3 0.07689666748046875 4 Carbamidomethyl (C),Oxidation (M) _EFAHQRM(Oxidation (M))C(Carbamidomethyl (C))_ REV__ENSG00000081014|ENST00000261842|AP4E1;REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1 8.593279151180031 0.5292430274356741 1 E[C(Carbamidomethyl (C))K]EE 5 -1 10.202 0 0 0.933 0 0 400.152147361525 0 400.152147361525 0 -0.255762612236909 -0.255762612236909 0 0 0.4247425010840047 0 0 0.4247425010840047 E[C(Carbamidomethyl (C))K]EE 0.933 - 16 NaN NaN 119586.9 NaN 19191 4241 23430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23435 93.062 NaN 167080 35 0 17292 0.261 + 25854 SMDPLPVFL 9 55 509.76711747703814 1017.5196820208763 2 509.7668151855469 MULTI HCD FTMS 0 0 0 23430 22486.84765625 0.5387797830049393 2 -0.04573822021484375 5 Unmodified _SMDPLPVFL_ ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}{I|L} 2 7 25.217 0 0 2.4782 0 0 739.3584481948253 0 739.3584481948253 0 10.52378753635658 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.4782 + + 16 NaN NaN 101842.2 NaN 19192 4241 23430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23437 93.067 NaN 908630 35 0 258040 0.327 + 6101 FPEGLFYEF 9 60 574.7685864343971 1147.522619935594 2 574.768798828125 MULTI HCD FTMS 0 0 0 23436 450035.625 0.1389476260631836 -14 0.3653717041015625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 58.678817012210395 0.019429721296335044 1 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 61.983 0 0 5.4014 0 0 543.269341020569 0 543.269341020569 0 46.62794683835358 0 0 0 2 0 1.305462187404089 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5.4014 + + 179 + NaN NaN 221821.1 NaN 19193 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23438 93.071 NaN 340270 35 0 21375 0.262 + -1 RRVIAVVMKFY 11 68 466.6078790432832 1396.8018077300496 3 466.60791015625 MULTI HCD FTMS 0 0 0 23436 88568.75 0.569110694761027 3 -0.07860565185546875 2 Oxidation (M) _RRVIAVVM(Oxidation (M))KFY_ REV__ENST00000535889.5_1_1:237062218-237062302:+|nuORF 1.214830529360525 0.41359283248740725 1 V{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.7853 0 0 595.3962411783499 552.2459416608898 1147.6421828392397 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.7853 + + 77 + NaN NaN 130882.7 NaN 19194 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23439 93.075 NaN 182340 35 0 30339 0.261 + 14578 LFLDPAPLL 9 40 499.79959105470016 997.5846291762003 2 499.7996520996094 MULTI HCD FTMS 0 0 0 23436 85763.015625 0.46491055175779056 -6 0.15212249755859375 3 Unmodified _LFLDPAPLL_ REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF 15.847184025352803 0.2234401846867398 1 AP{I|L}{I|L} 4 -1 41.938 0 0 4.204 0 0 585.3162796905411 0 585.3162796905411 0 41.938200260161125 0 0 0 1 0 0 0 AP{I|L}{I|L} 4.204 + + 7 NaN NaN 112220.6 NaN 19195 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23440 93.078 NaN 107460 35 0 18497 0.262 -1 0 43 405.1186809059501 808.2228088787002 2 405.118896484375 MULTI HCD FTMS 0 0 0 23436 54481.6640625 0.21927490914291065 29 -0.7501296997070312 4 NaN NaN 1 H 1 -1 0.27759 0 0 0.034345 0 0 326.9925059995971 341.13678919010005 668.1292951896971 0 0 0 0 0 0 0 0 0 H 0.034345 - 4 + NaN NaN 100526 NaN 19196 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23441 93.082 NaN 212090 35 0 24061 0.261 -1 LYLEVFSML 9 68 565.7949960561589 1129.5754391791177 2 566.297119140625 MULTI HCD FTMS 0 0 0 23436 57162.625 0.3490507270236363 13 -0.334136962890625 5 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 13.90604991867851 0.24021115267848145 1 NPV{M(Oxidation (M))|F} 4 -1 25.962 0 0 2.2984 0 0 654.3317085656396 0 654.3317085656396 0 1.43655163379508 0 0 0 0.3054621874040891 0 0 0 NPV{M(Oxidation (M))|F} 2.2984 - 353 + NaN NaN 127157 NaN 19197 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23442 93.085 NaN 147920 35 0 18565 0.261 + 22804 QYLFPSFETF 10 52 639.8057898693354 1277.5970268054707 2 639.8070068359375 MULTI HCD FTMS 0 0 0 23436 39764.3046875 0.5186628529584788 -4 0.09639739990234375 6 Unmodified _QYLFPSFETF_ ENSG00000134539|ENST00000336164|KLRD1;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;ENST00000543420.5_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-2|KLRD1;nc|ENSG00000134539|Q13241-3|KLRD1 40.23920728925047 0.14333095755487663 1 RET{M(Oxidation (M))|F} 4 7 46.938 0 0 3.6739 0 0 726.323489866286 0 726.323489866286 0 34.94850021680094 0 0 0 1.5 0 0 0 RET{M(Oxidation (M))|F} 3.6739 - 14 NaN NaN 104100.8 NaN 19198 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23443 93.088 NaN 114760 35 0 15937 0.264 + 6500 FPIPGPVLL 9 38 476.7968802368109 951.5792075404219 2 476.7970886230469 MULTI HCD FTMS 0 0 0 23436 35717.703125 0.8163646264125088 -2 0.04906463623046875 7 Unmodified _FPIPGPVLL_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 14.581692164780916 0.23437375358055648 1 {I|L}{I|L} 2 7 25.969 0 0 2.7291 0 0 707.4008419885726 0 707.4008419885726 0 23.494850021680094 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.7291 + + 4 NaN NaN 108222.9 NaN 19199 4242 23436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23445 93.093 NaN 3433500 35 0 429310 0.327 + 5088 FEFEPFLQ 8 103 528.7555912140499 1055.4966294948997 2 528.7559814453125 MULTI HCD FTMS 0 0 0 23444 2352778.25 1 0 0 1 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 107.99703571036002 0.036978982887966305 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 80.181 0 0 7.5965 7.5965 89.4 0 0 0 7.810445138686688 7.810445138686688 7.810445138686688 7.810445138686688 0 2.589136830878453 0 1.1307196863200843 1.086696871556164 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}EPE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]P{M(Oxidation (M))|F}E{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}E{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PEQ{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]P{M(Oxidation (M))|F}E{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PEQ{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{M(Oxidation (M))|F}EE 7.5965;6.8565;6.5953;5.8124;5.6896;5.5193;5.1781;4.6455;4.5092;4.4653 -;-;-;-;-;-;-;-;-;- 4413 + NaN NaN 605117.2 NaN 19200 4243 23444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23446 93.098 NaN 90642 35 0 31626 0.261 -1 0 41 633.3692585006554 1264.7239640681107 2 633.3694458007812 MULTI HCD FTMS 0 0 0 23444 32774.37890625 0.010285670543886124 70 -1.5282135009765625 2 NaN NaN 1 C(Carbamidomethyl (C)) 1 -1 15.485 0 0 1.2243 0 0 1086.6847622632263 0 1086.6847622632263 0 11.989700043360187 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 1.2243 - 13 + NaN NaN 99405.7 NaN 19201 4243 23444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23447 93.101 NaN 269410 35 0 39064 0.261 + -1 LYHEPPMWL 9 56 601.2890127635567 1200.5634725939133 2 601.2887573242188 MULTI HCD FTMS 0 0 0 23444 60825.35546875 0.14462135454374697 18 -0.44516754150390625 3 Oxidation (M) _LYHEPPM(Oxidation (M))WL_ REV__ENSG00000174915|ENST00000308020|PTDSS2;REV__ENST00000526878.5_1_11:460175-490579:+|nuORF 7.910154910731844 0.2910521888787154 1 W{I|L} 2 -1 25.969 0 0 2.1631 0 0 883.3900160226217 0 883.3900160226217 0 15.511525224473813 0 0 0 0.5 0 0 0 W{I|L} 2.1631 + + 16 NaN NaN 117004.3 NaN 19202 4243 23444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23448 93.104 NaN 208590 35 0 15010 0.261 + 11448 IYQEVWNLF 9 57 606.3083799907627 1210.6022070483252 2 606.811767578125 MULTI HCD FTMS 0 0 0 23444 20333.142578125 0.04006409674215495 18 -0.44516754150390625 4 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 20.41453444215458 0.18397929046831515 1 [Y{I|L}]G[W{I|L}]W 6 5 35.635 0 0 2.9436 0 0 0 389.1829572357746 389.1829572357746 26.170912423450403 0 0 0 0 1.5 1.0969100130080565 0 0 [Y{I|L}]G[W{I|L}]W 2.9436 - 170 NaN NaN 110867.7 NaN 19203 4243 23444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23449 93.108 NaN 62370 35 0 10451 0.261 -1 RTMPHITLGCV 11 32 622.3163007875391 1242.6180486418782 2 622.3177490234375 MULTI HCD FTMS 0 0 0 23444 35500.9921875 1 0 0 5 Oxidation (M) _RTM(Oxidation (M))PHITLGCV_ ENST00000418310.5_1_7:73535775-73536204:+|nuORF 7.608950283845883 0.38555039536024605 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 19.705 0 0 1.5858 0 0 852.427266026447 0 852.427266026447 0 19.7049999164468 0 0 0 0.9247425010840047 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.5858 - 16 + NaN NaN 86535.4 NaN 19204 4243 23444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23451 93.113 NaN 593650 35 0 135740 0.327 + 30621 VPDFSFPYL 9 65 542.7706181215256 1083.526683309851 2 542.7700805664062 MULTI HCD FTMS 0 0 0 23450 240731.8125 1 0 0 1 Unmodified _VPDFSFPYL_ REV__ENSG00000042781|ENST00000307340|USH2A;REV__nc|ENSG00000042781|O75445-3|USH2A 20.453626601364224 0.18364154288633264 1 VPD{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V[YT] 9 -1 + 56.921 0 0 5.2533 5.2533 89.188 0 0 0 37.457443841136495 5.6424927368725974 5.6424927368725974 16.238350322034236 0 1.610924374808178 1.3979400086720375 0 0 VPD{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V[YT];VP[{M(Oxidation (M))|F}E]{[ET]|[MV]}V[YT];VP[{M(Oxidation (M))|F}E]{I|L}{[ES]|[DT]|[{I|L}C]}[YT];[VP]D[WP][QT]E{I|L};[VP]{[QC]|[C(Carbamidomethyl (C))A]}A{I|L}[DP]E{I|L};[DP]V[WP][QT]E{I|L};{I|L}{M(Oxidation (M))|F}[DP]{[ET]|[MV]}V[YT];{I|L}{M(Oxidation (M))|F}[DP]{I|L}{[ES]|[DT]|[{I|L}C]}[YT];[VP]D[HA][RK]{[{M(Oxidation (M))|F}D]|MM};{I|L}{M(Oxidation (M))|F}{[ET]|[MV]}[WK]{M(Oxidation (M))|F}N 5.2533;3.7547;3.478;3.3521;2.4503;2.0408;1.787;1.5103;1.2966;0.47171 -;-;-;-;-;-;-;-;-;- 237 + NaN NaN 169809.8 NaN 19205 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23452 93.117 NaN 505970 35 0 48394 0.261 -1 SRVTQLYMQL 10 57 627.8293233168469 1253.6440937004936 2 627.8296508789062 MULTI HCD FTMS 0 0 0 23450 177269.765625 0.6266701377139674 -1 0.01950836181640625 2 Oxidation (M) _SRVTQLYM(Oxidation (M))QL_ ENSG00000116194|ENST00000234816|ANGPTL1;ENSG00000136859|ENST00000373425|ANGPTL2 5.296884461304476 0.4472664531305844 1 WADPV{I|L} 6 -1 58.761 0 0 4.6872 0 0 554.2854389753095 0 554.2854389753095 0 51.77108148272637 0 0 0 1.7614393726401687 0 0 0 WADPV{I|L} 4.6872 - 57 NaN NaN 177157.5 NaN 19206 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23453 93.121 NaN 273950 35 0 50950 0.261 + 31282 VWFNIGSVDTF 11 53 642.8165858427049 1283.6186187522096 2 642.816650390625 MULTI HCD FTMS 0 0 0 23450 157649.453125 0.522419493704496 5 -0.14426422119140625 3 Unmodified _VWFNIGSVDTF_ ENSG00000141385|ENST00000269143|AFG3L2 103.82355648334675 0.02123633812097167 1 {[RE]|[WV]}{M(Oxidation (M))|F}N{[VA]|[{I|L}G]}SVDT{M(Oxidation (M))|F} 11 0 + 89.359 0 0 6.9615 6.9615 88.834 0 0 0 7.367585652254178 69.89510130239128 7.367585652254178 9.128498242810991 0 2.305462187404089 0 0.7742275032520141 1.4361818737241734 + + {[RE]|[WV]}{M(Oxidation (M))|F}N{[VA]|[{I|L}G]}SVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{[VA]|[{I|L}G]}SVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{[VA]|[{I|L}G]}[HQ]H{M(Oxidation (M))|F} 6.9615;6.2503;3.6803 +;-;- + 254 NaN NaN 126868.6 NaN 19207 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23454 93.124 NaN 386900 35 0 57001 0.261 + 20245 NYLPFIMEL 9 61 578.2912249331946 1154.567896933189 2 578.2913818359375 MULTI HCD FTMS 0 0 0 23450 143913.34375 0.07087372141182728 34 -0.8357620239257812 4 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 66.45667989310934 0.010234776021261575 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 66.358 0 0 5.7474 5.7474 92.802 0 0 0 13.256886463274284 44.67568314065828 13.256886463274284 66.3581207885825 0 1.9436726795685342 0 0 0.6109243748081782 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 5.7474 + + 297 NaN NaN 141133.9 NaN 19208 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23455 93.127 NaN 375880 35 0 40149 0.261 -1 0 72 585.7595504324721 1169.5045479317441 2 585.7595825195312 MULTI HCD FTMS 0 0 0 23450 133639.109375 0.2791448768223769 -12 0.30291748046875 5 NaN NaN 1 PMGSW{I|L}EG{M(Oxidation (M))|F} 9 -1 63.049 0 0 5.3911 0 0 147.06994039562238 0 147.06994039562238 0 48.63651120157711 0 0 0 0.7059771852360797 0 0.9436726795685342 0 PMGSW{I|L}EG{M(Oxidation (M))|F} 5.3911 - 1409 + NaN NaN 135008.3 NaN 19209 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23456 93.131 NaN 106740 35 0 9462.4 0.263 + 20686 PFLSKVKLIYY 11 59 457.60797884175486 1369.8021071254645 3 457.6082458496094 MULTI HCD FTMS 0 0 0 23450 17307.609375 0.16495490008324534 19 -0.47473907470703125 6 Unmodified _PFLSKVKLIYY_ ENSG00000253710|ENST00000521508|ALG11 1.3296431237094175 0.4130893034510334 1 C(Carbamidomethyl (C)) 1 11 4.6041 0 0 0.33611 0 0 1077.6961328596426 129.05576502017814 1206.7518978798207 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.33611 - 19 + NaN NaN 101838.8 NaN 19210 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23457 93.134 NaN 123110 35 0 22696 0.261 + 6501 FPIPGPVLL 9 36 476.7968802368109 951.5792075404219 2 476.7970275878906 MULTI HCD FTMS 0 0 0 23450 43752.14453125 1 0 0 7 Unmodified _FPIPGPVLL_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 14.581692164780916 0.23437375358055648 1 {I|L}{I|L} 2 7 25.217 0 0 2.65 0 0 707.4007615491278 0 707.4007615491278 0 20.779550148593486 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.65 + + 5 NaN NaN 103050.3 NaN 19211 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23458 93.137 NaN 202050 35 0 61443 0.261 + 14937 LLEWLSFL 8 50 510.78988831782965 1019.5652237024593 2 510.7915954589844 MULTI HCD FTMS 0 0 0 23450 16017.5 0.4979394701560609 1 -0.03285980224609375 8 Unmodified _LLEWLSFL_ ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5785216-5787684:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L 8.593279151180031 0.5292430274356741 1 AV{I|L}EPE 6 7 25.75 0 0 2.5256 0 0 363.21251113105626 0 363.21251113105626 0 15.573193899842437 0 0 0 0 0 0 0 AV{I|L}EPE 2.5256 - 79 NaN NaN 113245.5 NaN 19212 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23459 93.141 NaN 82045 35 0 11341 0.261 + 30836 VQEEEEPKN 9 41 551.2568081121644 1100.4990632911288 2 551.7598266601562 MULTI HCD FTMS 0 0 0 23450 5045.3642578125 0.18488085606000693 1 -0.03285980224609375 9 Unmodified _VQEEEEPKN_ REV__ENSG00000171681|ENST00000261168|ATF7IP;REV__ENST00000537653.5_1_12:14576849-14628955:+|nuORF;REV__ENST00000539659.5_1_12:14576849-14613468:+|nuORF;REV__ENST00000541654.1_1_12:14538317-14613468:+|nuORF;REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;REV__nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP 3.5964929083625545 0.32375295897743744 1 Q 1 -1 1.2591 0 0 0.11441 0 0 568.2317425897601 401.18235193424067 969.4140945240008 0 0 0 0 0 0 0 0 0 Q 0.11441 + + 2 + NaN NaN 95228.2 NaN 19213 4244 23450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23461 93.146 NaN 430170 35 0 62537 0.327 -1 0 82 539.7465249798657 1077.4784970265314 2 539.7466430664062 MULTI HCD FTMS 0 0 0 23460 152608.453125 0.5734422702133604 1 -0.02618408203125 1 NaN NaN 1 {M(Oxidation (M))|F}PE[C(Carbamidomethyl (C))H]{I|L} 6 -1 25.891 0 0 2.4029 0 0 276.11080996204583 0 276.11080996204583 0 13.856603226686701 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}PE[C(Carbamidomethyl (C))H]{I|L} 2.4029 - 477 NaN NaN 148224.3 NaN 19214 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23462 93.15 NaN 303090 35 0 53094 0.261 + 15592 LPDWPEVYF 9 64 583.2820546354186 1164.5495563376371 2 583.2821655273438 MULTI HCD FTMS 0 0 0 23460 155583.28125 1 0 0 2 Unmodified _LPDWPEVYF_ ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1 46.020951573049366 0.037705236580089195 1 WPEVY{M(Oxidation (M))|F} 6 3 50.725 0 0 4.3557 0 0 325.16267592597814 0 325.16267592597814 0 31.24388706398257 0 0 0 1.9247425010840047 0 0.3252574989159953 0 + WPEVY{M(Oxidation (M))|F} 4.3557 + + 388 NaN NaN 147048.2 NaN 19215 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23463 93.154 NaN 365570 35 0 78612 0.261 -1 YLMSICCM 8 50 555.2109999068381 1108.407446880476 2 555.211181640625 MULTI HCD FTMS 0 0 0 23460 61564.7421875 0.4587515310565804 1 -0.02618408203125 3 2 Carbamidomethyl (C),2 Oxidation (M) _YLM(Oxidation (M))SIC(Carbamidomethyl (C))C(Carbamidomethyl (C))M(Oxidation (M))_ ENSG00000021776|ENST00000156471|AQR;ENST00000558202.1_1_15:35240356-35256599:-|nuORF 2.8892196856762586 0.5377058178582064 1 [Y{I|L}]E 3 -1 22.192 0 0 2.0021 0 0 0 700.1940123924479 700.1940123924479 18.212112250009653 0 0 0 0 0 1.5228787452803376 0.5 0 [Y{I|L}]E 2.0021 - 8 NaN NaN 137341.1 NaN 19216 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23464 93.157 NaN 131830 35 0 14169 0.261 -1 YLGVPLCDTCA 11 49 606.275225282377 1210.535897631554 2 606.2735595703125 MULTI HCD FTMS 0 0 0 23460 37078.25 0.6565698298603106 1 -0.02618408203125 4 Carbamidomethyl (C) _YLGVPLCDTC(Carbamidomethyl (C))A_ ENST00000602586.1_1_1:16545087-16552470:-|nuORF 6.2057823575117 0.391704213221645 1 [Y{I|L}]G[W{I|L}]W 6 -1 18.874 0 0 1.5591 0 0 0 389.11640335717635 389.11640335717635 11.884249941294062 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]G[W{I|L}]W 1.5591 - 41 NaN NaN 101265 NaN 19217 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23465 93.16 NaN 134350 35 0 17110 0.261 + 8854 HLTFYTDLL 9 38 561.7951658724708 1121.5757788117414 2 561.795166015625 MULTI HCD FTMS 0 0 0 23460 34743.328125 0.016971120169812177 16 -0.39279937744140625 5 Unmodified _HLTFYTDLL_ REV__ENSG00000198382|ENST00000356136|UVRAG 7.289230182591677 0.29575926068275815 1 D{I|L}{I|L} 3 -1 31.198 0 0 2.7816 0 0 762.36528212715 0 762.36528212715 0 24.20818753952375 0 0 0 0.5 0 0 0 D{I|L}{I|L} 2.7816 + + 10 NaN NaN 101186.7 NaN 19218 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23466 93.163 NaN 88229 35 0 10662 0.261 + -1 CAVCRFCEI 9 41 550.7372997541942 1099.4600465751882 2 550.7548828125 MULTI HCD FTMS 0 0 0 23460 13895.142578125 0.5494420057195369 4 -0.1114044189453125 6 Carbamidomethyl (C) _CAVCRFC(Carbamidomethyl (C))EI_ REV__ENSG00000016082|ENST00000230658|ISL1 2.0597508629832335 0.3354026079994024 1 D 1 -1 3.4949 0 0 0.31787 0 0 450.46915409647573 530.9393404596311 981.4084945561069 0 0 0 0 0 0 0 0 0 D 0.31787 - 6 + NaN NaN 105320.9 NaN 19219 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23467 93.167 NaN 58952 35 0 4047.7 0.261 + 12305 KLSDSECVYLI 11 35 635.323150918804 1268.631748904408 2 635.322265625 MULTI HCD FTMS 0 0 0 23460 6304.1533203125 0.2826162694993731 -1 0.03285980224609375 7 Unmodified _KLSDSECVYLI_ REV__ENSG00000236320|ENST00000674182|SLFN14;REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 4.189502756095605 0.4005469306127019 1 D 1 -1 11.237 0 0 0.88577 0 0 328.22539011710165 822.3554781549436 1150.5808682720453 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.88577 + + 6 + NaN NaN 107413.7 NaN 19220 4245 23460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23469 93.172 NaN 1287100 35 0 280190 0.327 + 30641 VPDPFFVEL 9 58 531.7799991395873 1061.5454453459745 2 531.7791137695312 MULTI HCD FTMS 0 0 0 23468 895124.125 0.5500270059606671 3 -0.0852203369140625 1 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 58.678817012210395 0.019429721296335044 1 {M(Oxidation (M))|F}VE{I|L} 4 5 44.993 0 0 4.2384 0 0 555.269237398885 0 555.269237398885 0 28.841349888432358 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.2384 + + 618 NaN NaN 278408.4 NaN 19221 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23470 93.176 NaN 386330 35 0 16725 0.262 -1 0 87 437.2570625673022 1308.7493583021067 3 437.2574157714844 MULTI HCD FTMS 0 0 0 23468 331872.875 0.7885435033029196 18 -0.441864013671875 2 NaN NaN 1 K[TP]N 4 -1 23.817 0 0 1.8198 0 0 850.4769196060306 0 850.4769196060306 0 13.551186054322155 0 0 0 1.2134679910804405 0 0 0 K[TP]N 1.8198 - 65 NaN NaN 141759.6 NaN 19222 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23471 93.18 NaN 390760 35 0 41077 0.261 + 27019 SYLQYLEYL 9 57 596.3002766236732 1190.5860003141463 2 596.3002319335938 MULTI HCD FTMS 0 0 0 23468 189721.4375 0.07996385279378232 10 -0.252227783203125 3 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 93.16586880292088 0.00444300900000894 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 88.198 0 0 7.4079 7.4079 93.061 0 0 0 6.522949032151004 74.64123782136497 6.522949032151004 16.4363034371533 0 2.4247425010840047 0 0.805462187404089 0.7302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};[YE][KA]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}K[{M(Oxidation (M))|F}E]EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}KEE{M(Oxidation (M))|F}Y{I|L};[YE]{I|L}[Y{I|L}]{[QS]|[NT]}Y{I|L} 7.4079;6.0274;6.0212;4.9749;3.6256;2.4464 +;-;-;-;-;- + 402 NaN NaN 136617.5 NaN 19223 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23472 93.183 NaN 296920 35 0 51985 0.261 + 1760 CLKYMMFLF 9 45 598.291024852113 1194.5674967710258 2 598.7888793945312 MULTI HCD FTMS 0 0 0 23468 103776.8125 0.13011813005865167 -23 0.6046676635742188 4 Unmodified _CLKYMMFLF_ ENSG00000011105|ENST00000011898|TSPAN9 11.640296217721598 0.25978676193971967 1 [Y{I|L}]G[MT]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 4 + 52.975 0 0 4.4347 4.4347 84.328 0 0 0 16.777585485147775 16.28077310822473 16.28077310822473 8.816603697153802 0 1.8494850021680094 1.5228787452803376 0 0 [Y{I|L}]G[MT]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}][VS][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}][VS]C{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}][HC][RP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}][HC]{M(Oxidation (M))|F}[RP]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HC]C[PS]{I|L}{M(Oxidation (M))|F};[Y{I|L}]G{[{M(Oxidation (M))|F}H]|[RQ]}D[PS]{I|L}{M(Oxidation (M))|F};[Y{I|L}][VS]D{[RE]|[WV]}[WQ] 4.4347;3.6966;3.3717;2.7346;1.9166;1.5762;1.2836;0.16609 -;-;-;-;-;-;-;- 105 NaN NaN 146197.4 NaN 19224 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23473 93.186 NaN 306140 35 0 62669 0.263 + 22337 QPLIIAVVL 9 49 483.32328102459905 964.6320091159981 2 483.3233642578125 MULTI HCD FTMS 0 0 0 23468 151516.390625 0.11002865564247968 17 -0.4156951904296875 5 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 36.04419817259434 0.08350412372117409 1 RAVV{I|L} 5 5 53.928 0 0 5.5905 0 0 408.26069838691564 0 408.26069838691564 0 46.938200260161125 0 0 0 1 0 0 1.3494850021680094 RAVV{I|L} 5.5905 - 45 NaN NaN 141506 NaN 19225 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23474 93.19 NaN 176440 35 0 25197 0.261 + 17996 MLFIFMAR 8 49 514.7750616346616 1027.535570336123 2 514.7755737304688 MULTI HCD FTMS 0 0 0 23468 67979.0625 0.6161058346071926 2 -0.0557098388671875 6 Unmodified _MLFIFMAR_ REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF 14.581692164780916 0.48650662947107914 1 {I|L}M{M(Oxidation (M))|F} 3 -1 50.177 0 0 4.8833 0 0 0 633.3227366037662 633.3227366037662 30.713337517843655 0 0 0 0 1 1.6989700043360187 0 0 {I|L}M{M(Oxidation (M))|F} 4.8833 - 51 + NaN NaN 109118.7 NaN 19226 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23475 93.193 NaN 167410 35 0 24022 0.261 + 25464 SFCTHSACFI 10 48 558.235339675462 1114.456126417724 2 558.2345581054688 MULTI HCD FTMS 0 0 0 23468 64360.484375 0.5448679227337956 4 -0.1114349365234375 7 Unmodified _SFCTHSACFI_ REV__ENST00000507917.5_1_4:44704555-44704834:-|nuORF 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.62718 0 0 575.2094355991677 389.15464197330317 964.3640775724709 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.62718 + + 14 + NaN NaN 109817.5 NaN 19227 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23476 93.196 NaN 113570 35 0 26306 0.261 + 10903 IWPPFQPPAW 10 34 619.8211691983357 1237.6277854634714 2 619.8219604492188 MULTI HCD FTMS 0 0 0 23468 46026.99609375 0.44770106823657185 5 -0.1443634033203125 8 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 10.073929032068715 0.4168838835836452 1 Q[HQ]W 4 8 22.307 0 0 1.8024 0 0 640.3375111310562 0 640.3375111310562 0 12.129843661361406 0 0 0 0.8494850021680094 0 0 0 Q[HQ]W 1.8024 - 8 NaN NaN 119919 NaN 19228 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23477 93.2 NaN 78763 35 0 5109.4 0.261 + -1 MDFLTCNFI 9 50 588.7565360496195 1175.498519166039 2 588.756591796875 MULTI HCD FTMS 0 0 0 23468 15717.2978515625 0.0861911033737595 7 -0.1768798828125 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DFLTC(Carbamidomethyl (C))NFI_ REV__ENSG00000136114|ENST00000258613|THSD1;REV__nc|ENSG00000136114|Q9NS62-2|THSD1;REV__nc|ENSG00000136114|Q9NS62-3|THSD1 13.90604991867851 0.24021115267848145 1 {I|L}N{M(Oxidation (M))|F}{I|L} 4 -1 42.053 0 0 3.5774 0 0 670.2094593732437 0 670.2094593732437 0 34.605319037595876 0 0 0 1.25 0 0 0 {I|L}N{M(Oxidation (M))|F}{I|L} 3.5774 - 80 NaN NaN 106603.5 NaN 19229 4246 23468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23479 93.205 NaN 968790 35 0 122620 0.327 + 6302 FPFPVTVSL 9 64 503.7840434038367 1005.5535338744734 2 503.78411865234375 MULTI HCD FTMS 0 0 0 23478 320610.15625 0.603612180163397 4 -0.1115264892578125 1 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 97.07464715276575 0.004340583992084827 1 {[TV]|[{I|L}S]}V[C(Carbamidomethyl (C))K]TVS{I|L} 9 5 + 67.514 0 0 6.7141 6.7141 90.756 0 0 0 13.713556777153926 38.99674684468792 13.713556777153926 11.989700043360187 0 1.3807196863200843 1.5228787452803376 0.805462187404089 0 {[TV]|[{I|L}S]}V[C(Carbamidomethyl (C))K]TVS{I|L};{[TV]|[{I|L}S]}VT[C(Carbamidomethyl (C))K]VS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[VP]TVS{I|L};[VS]{I|L}[C(Carbamidomethyl (C))K]TVS{I|L};[VS]{I|L}T[C(Carbamidomethyl (C))K]VS{I|L} 6.7141;5.5217;5.265;4.6585;3.4662 -;-;+;-;- + 174 NaN NaN 231210.8 NaN 19230 4247 23478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23480 93.209 NaN 364330 35 0 64908 0.261 + 5561 FLLALEPEL 9 48 522.8021825459961 1043.589812158792 2 522.802490234375 MULTI HCD FTMS 0 0 0 23478 141545.484375 0.11717338996825538 14 -0.33377838134765625 2 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 21.74664581756881 0.17247014374749275 1 A{I|L}E[EP]{I|L} 6 3 30.138 0 0 2.8879 0 0 373.237108299025 0 373.237108299025 0 30.138050198288013 0 0 0 0.9247425010840047 0 0 0 + A{I|L}E[EP]{I|L} 2.8879 + + 17 NaN NaN 127237.6 NaN 19231 4247 23478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23481 93.213 NaN 124920 35 0 7323.6 0.261 + 7071 FQVKLLYRMR 10 54 451.93240636375714 1352.7753896914714 3 451.9326477050781 MULTI HCD FTMS 0 0 0 23478 88264.5625 0.3282996164967981 29 -0.718597412109375 3 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 1.5922808571145555 0.4668755089467872 1 K 1 -1 6.5938 0 0 0.48743 0 0 850.4759339803371 371.1711519830688 1221.647085963406 0 0 0 0 0 0.5 0 0 0 K 0.48743 + + 5 + NaN NaN 97301.8 NaN 19232 4247 23478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23482 93.216 NaN 297980 35 0 66854 0.261 -1 CSNTCTCKNG 10 52 601.224046163886 1200.4335393945719 2 601.2241821289062 MULTI HCD FTMS 0 0 0 23478 74243.390625 0.3756462033785079 -9 0.2340240478515625 4 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))SNTC(Carbamidomethyl (C))TC(Carbamidomethyl (C))KNG_ ENSG00000187800|ENST00000292357|PEAR1;ENST00000469390.5_1_1:156877911-156884587:+|nuORF 1.6526216038709556 0.46655611578153744 1 M{I|L} 2 -1 16.198 0 0 1.3493 0 0 0 953.3167177286394 953.3167177286394 13.098943791441968 0 0 0 0 0 0 0 0 M{I|L} 1.3493 - 12 + NaN NaN 141870 NaN 19233 4247 23478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23483 93.219 NaN 95210 35 0 20188 0.261 + -1 LHRSCDCF 8 46 547.7288201751354 1093.4430874170707 2 547.7294311523438 MULTI HCD FTMS 0 0 0 23478 14578.4794921875 0.17156605242732478 3 -0.0785980224609375 5 2 Carbamidomethyl (C) _LHRSC(Carbamidomethyl (C))DC(Carbamidomethyl (C))F_ REV__ENSG00000151148|ENST00000342494|UBE3B;REV__ENST00000535900.5_1_12:109939233-109948161:+|nuORF;REV__nc|ENSG00000151148|Q7Z3V4-2|UBE3B 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 101961.3 NaN 19234 4247 23478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23484 93.223 NaN 120000 35 0 18885 0.261 + 28939 TWYPVSIPAF 10 49 590.8052199146704 1179.5958868961407 2 590.8062133789062 MULTI HCD FTMS 0 0 0 23478 27693.396484375 0.01818859568086969 46 -1.0081939697265625 6 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 22.736283301280096 0.29844449404982915 1 [W{M(Oxidation (M))|F}]{I|L}S 4 8 28.94 0 0 2.4534 0 0 0 643.2883394830686 643.2883394830686 23.455612550363796 0 0 0 0 1.4247425010840047 0 0 0 [W{M(Oxidation (M))|F}]{I|L}S 2.4534 - 42 + NaN NaN 103482.4 NaN 19235 4247 23478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23486 93.227 NaN 1995600 35 0 575380 0.327 + 6102 FPEGLFYEF 9 57 574.7685864343971 1147.522619935594 2 574.7688598632812 MULTI HCD FTMS 0 0 0 23485 1773332.25 0.5475128915822698 -8 0.209564208984375 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 96.28474662873226 0.004361282420133734 1 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 83.236 0 0 7.2535 7.2535 95.604 0 0 0 8.805971595366842 56.280673999630864 8.805971595366842 70.39713149807213 0 2.6989700043360187 0 1.4361818737241734 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ET]|[MV]}[TP]P{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 7.2535;1.1188 -;- 205 NaN NaN 402214.9 NaN 19236 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23487 93.232 NaN 1076600 35 0 114830 0.261 + 5089 FEFEPFLQ 8 88 528.7555912140499 1055.4966294948997 2 528.7556762695312 MULTI HCD FTMS 0 0 0 23485 650406.3125 0.27644182468109774 5 -0.1211700439453125 2 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 92.8221339359638 0.028586293957039193 1 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 63.521 0 0 6.0181 6.0181 89.478 0 0 0 4.941044303727288 28.536800472092303 4.941044303727288 12.004412890910956 0 2.004432191740108 0 0.8338395061109687 0.2742275032520141 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PEQ{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]PQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[YE]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PQE{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE[AG]{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PEQ{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PQ{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 6.0181;4.8808;4.3662;3.5323;3.4449;3.3655;3.3449;3.2289;3.1548;2.7729 -;-;-;-;-;-;-;-;-;- 1700 NaN NaN 251219.9 NaN 19237 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23488 93.235 NaN 268400 35 0 45442 0.261 + 6177 FPEIVAPLL 9 30 499.79959105470016 997.5846291762003 2 499.7997131347656 MULTI HCD FTMS 0 0 0 23485 184472.078125 1 0 0 3 Unmodified _FPEIVAPLL_ ENSG00000110921|ENST00000228510|MVK 28.486842064014134 0.11819662193267319 1 AP{I|L}{I|L} 4 5 45.745 0 0 4.5856 0 0 585.3158527641316 0 585.3158527641316 0 41.141303353600094 0 0 0 1.3807196863200843 0 0 0 + AP{I|L}{I|L} 4.5856 + + 26 NaN NaN 118666 NaN 19238 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23489 93.239 NaN 264060 35 0 56703 0.261 + 29173 TYISFPLEL 9 54 541.7907467611924 1081.5669405891847 2 541.7922973632812 MULTI HCD FTMS 0 0 0 23485 122769.1484375 1 0 0 4 Unmodified _TYISFPLEL_ ENSG00000273820|ENST00000621775|USP27X 65.23502041540118 0.010630085227462206 1 [YT]{I|L}S{M(Oxidation (M))|F}[{I|L}P]E{I|L} 9 0 + 75.952 0 0 7.0224 7.0224 93.699 0 0 0 19.621892823592972 70.46774379777631 19.621892823592972 29.75895023531386 0 1.7614393726401687 1.3979400086720375 0.8494850021680094 0 + + [YT]{I|L}S{M(Oxidation (M))|F}[{I|L}P]E{I|L};[YT]{I|L}[KG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{I|L};[YT]{I|L}[{M(Oxidation (M))|F}T][VP]E{I|L};[YT][KG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{I|L} 7.0224;4.271;4.0818;3.0892 +;-;-;- + 131 NaN NaN 138223.2 NaN 19239 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23490 93.242 NaN 348930 35 0 55332 0.261 + 20246 NYLPFIMEL 9 68 578.2912249331946 1154.567896933189 2 578.291259765625 MULTI HCD FTMS 0 0 0 23485 97137.5546875 0.047837815522565205 38 -0.8258895874023438 5 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 66.45667989310934 0.010234776021261575 1 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 66.392 0 0 5.7504 5.7504 89.865 0 0 0 5.479465618955501 5.479465618955501 5.479465618955501 15.210988398972276 0 1.8979400086720375 1.154901959985743 0 0 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]}E{I|L};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V][Y{I|L}]{M(Oxidation (M))|F}[QP];[{M(Oxidation (M))|F}E][{I|L}V][Y{I|L}]{M(Oxidation (M))|F}[QP] 5.7504;4.4329;2.2769;1.8671;1.1462;0.56066 +;-;-;-;-;- + 354 NaN NaN 136903.9 NaN 19240 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23491 93.245 NaN 401820 35 0 38792 0.261 + 32465 WEDIFSGDF 9 58 558.235339675462 1114.456126417724 2 559.7302856445312 MULTI HCD FTMS 0 0 0 23485 10363.603515625 0.3669243286015674 4 -0.10489654541015625 6 Unmodified _WEDIFSGDF_ ENST00000439871.1_1_2:218925948-218930359:-|nuORF 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[YQ]S{M(Oxidation (M))|F} 7 6 40.578 0 0 3.641 0 0 162.09032519601493 0 162.09032519601493 0 14.374854021094947 0 0 0 0 0 1.1861818737241734 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[YQ]S{M(Oxidation (M))|F} 3.641 - 200 + NaN NaN 140024.5 NaN 19241 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23492 93.249 NaN 189720 35 0 13354 0.262 + -1 NRLVQRRKSQA 11 62 466.6078790432832 1396.8018077300496 3 466.6080322265625 MULTI HCD FTMS 0 0 0 23485 80421.3125 0.5167582135964284 9 -0.22270965576171875 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NRLVQRRKSQA_ REV__ENSG00000179813|ENST00000313851|FAM216B 0.5059551277355931 0.4167017191902429 1 V{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.7853 0 0 595.3959240603418 552.2457979791624 1147.6417220395042 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.7853 - 9 + NaN NaN 128703.3 NaN 19242 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23493 93.252 NaN 255740 35 0 42225 0.261 -1 0 45 555.292998772262 554.2857223056619 1 555.2940063476562 MULTI HCD FTMS 0 0 0 23485 110908.140625 0.7843217224463349 5 -0.1211700439453125 8 NaN NaN 1 G 1 -1 3.9794 0 0 0.71793 0 0 221.13754222929316 273.11057459049067 494.24811681978383 0 0 0 0 0 0 0 0 0 G 0.71793 - 6 + NaN NaN 137728.4 NaN 19243 4248 23485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23495 93.257 NaN 115260 35 0 25876 0.327 + 418 AKRAAWGG 8 45 408.7269659610041 815.4393789888082 2 408.72723388671875 MULTI HCD FTMS 0 0 0 23494 32337.322265625 0.4467085443839194 1 -0.026214599609375 1 Unmodified _AKRAAWGG_ REV__ENSG00000084110|ENST00000261208|HAL;REV__nc|ENSG00000084110|P42357-2|HAL;REV__nc|ENSG00000084110|P42357-3|HAL 0.7936320650641473 0.540814922690045 1 N 1 -1 3.9794 0 0 0.48801 0 0 425.2557985218145 273.1101473443969 698.3659458662114 0 0 0 0 0 0 0 0 0 N 0.48801 - 8 + NaN NaN 102060.5 NaN 19244 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23496 93.261 NaN 248660 35 0 19175 0.261 -1 LYLEVFSML 9 58 565.7949960561589 1129.5754391791177 2 566.2970581054688 MULTI HCD FTMS 0 0 0 23494 59258.87109375 0.3618509828384086 20 -0.5011138916015625 2 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F}VWKW 5 -1 25.674 0 0 2.2729 0 0 365.1615162580094 0 365.1615162580094 0 6.210149894766701 0 0 0 1.1237125054200234 0 0 0 {M(Oxidation (M))|F}VWKW 2.2729 - 552 NaN NaN 120167.1 NaN 19245 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23497 93.265 NaN 87588 35 0 18359 0.261 + 10904 IWPPFQPPAW 10 33 619.8211691983357 1237.6277854634714 2 619.8202514648438 MULTI HCD FTMS 0 0 0 23494 23644.142578125 0.22998476520612604 8 -0.19319915771484375 3 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 6.2057823575117 0.44245551207394906 1 {M(Oxidation (M))|F}[HQ]W 4 7 19.693 0 0 1.5912 0 0 621.3770619123062 0 621.3770619123062 0 19.69273760456403 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[HQ]W 1.5912 - 4 NaN NaN 97735.9 NaN 19246 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23498 93.268 NaN 137630 35 0 10412 0.261 + 10981 IYEDAVFPEE 10 53 606.275225282377 1210.535897631554 2 606.8110961914062 MULTI HCD FTMS 0 0 0 23494 17267.2109375 0.5221942287244002 5 -0.1145782470703125 4 Unmodified _IYEDAVFPEE_ REV__ENSG00000070367|ENST00000621441|EXOC5;REV__ENST00000554598.5_1_14:57706266-57735366:-|nuORF;REV__ENST00000555749.5_1_14:57710864-57735366:-|nuORF 6.723162845929126 0.4397169348982109 1 [Y{I|L}]{I|L} 3 -1 24.181 0 0 1.9976 0 0 0 818.2821494228227 818.2821494228227 12.754537344402905 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L} 1.9976 - 56 NaN NaN 100655.8 NaN 19247 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23499 93.272 NaN 86595 35 0 7694.6 0.264 + 20976 PLLDNSNH 8 50 455.2253708018938 NaN 0 455.2247009277344 PEAK HCD FTMS 0 0 0 23494 29081.423828125 0.5816822367254724 28 -0.6788787841796875 5 Unmodified _PLLDNSNH_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 6.354104778181461 0.38822285293237185 1 {I|L} 1 -1 3.4949 0 0 0.38471 0 0 585.2160481450002 207.11373315982658 792.3297813048267 0 0 0 0 0 0 0 0 0 {I|L} 0.38471 + + 3 + NaN NaN 99994.1 NaN 19248 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23500 93.275 NaN 114670 35 0 31975 0.261 + 5416 FHGSCKYL 8 48 477.7283077477134 953.4420625622269 2 477.7286071777344 MULTI HCD FTMS 0 0 0 23494 7868.2275390625 0.17689871586224837 -4 0.1114044189453125 6 Unmodified _FHGSCKYL_ ENST00000531211.1_1_8:70772071-70772629:-|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 7 5.4846 0 0 0.57524 0 0 263.1359235014831 540.2119845025999 803.3479080040829 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.57524 + + 4 + NaN NaN 107952.2 NaN 19249 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23501 93.278 NaN 78396 35 0 10268 0.261 + -1 MPLDLFVPF 9 33 547.7841053146085 1093.553657696017 2 548.2901000976562 MULTI HCD FTMS 0 0 0 23494 16903.208984375 0.620012704809896 -6 0.1637725830078125 7 Oxidation (M) _M(Oxidation (M))PLDLFVPF_ REV__PKHD1|p.V88M|1|0.56|ENSG00000170927|chr6:52082411-52082411|C/T|missense_variant 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.8732 0 0 928.4749661450388 0 928.4749661450388 0 10.30726239543597 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8732 + + 7 + NaN NaN 84687.6 NaN 19250 4249 23494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23503 93.283 NaN 534050 35 0 84843 0.326 -1 0 75 585.7595504324721 1169.5045479317441 2 585.7597045898438 MULTI HCD FTMS 0 0 0 23502 154907.5 0.32357021240708445 -6 0.17047882080078125 1 NaN NaN 1 Y{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EPE 7 -1 59.028 0 0 5.0473 0 0 316.1032887189469 0 316.1032887189469 0 25.100453850821367 0 0 0 1.7302046884880937 0 0.6989700043360187 0 Y{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EPE 5.0473 - 401 NaN NaN 169067.5 NaN 19251 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23504 93.288 NaN 301540 35 0 51191 0.261 + 20247 NYLPFIMEL 9 58 578.2912249331946 1154.567896933189 2 578.2909545898438 MULTI HCD FTMS 0 0 0 23502 53362.2109375 0.026279553885381373 40 -0.8510971069335938 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 69.10491478415734 0.009377850133389008 1 [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 48.368 0 0 4.1892 4.1892 86.147 0 0 0 27.39840907618465 10.954839578393347 10.954839578393347 10.713337517843648 0 2.6549471895720984 1.0969100130080565 0.4247425010840047 0 + + [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L} 4.1892;3.2613 +;- + 168 + NaN NaN 133948.4 NaN 19252 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23505 93.291 NaN 72408 35 0 14341 0.261 + 31283 VWFNIGSVDTF 11 32 642.8165858427049 1283.6186187522096 2 642.8169555664062 MULTI HCD FTMS 0 0 0 23502 20043.71484375 0.06642095581724947 11 -0.25518035888671875 3 Unmodified _VWFNIGSVDTF_ ENSG00000141385|ENST00000269143|AFG3L2 32.037481411007896 0.18823118669267547 1 N{I|L}GSV 5 6 41.983 0 0 3.2706 0 0 432.2176920938096 378.13083826236567 810.3485303561753 0 0 0 0 0 1.9247425010840047 0 0.3807196863200844 0 + N{I|L}GSV 3.2706 + + 26 + NaN NaN 110537 NaN 19253 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23506 93.295 NaN 76001 35 0 8775.9 0.261 + 22805 QYLFPSFETF 10 37 639.8057898693354 1277.5970268054707 2 639.8059692382812 MULTI HCD FTMS 0 0 0 23502 19418.791015625 0.2532876062670004 4 -0.0883636474609375 4 Unmodified _QYLFPSFETF_ ENSG00000134539|ENST00000336164|KLRD1;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;ENST00000543420.5_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-2|KLRD1;nc|ENSG00000134539|Q13241-3|KLRD1 13.614867670302875 0.3837631382804675 1 RET{M(Oxidation (M))|F} 4 7 40.745 0 0 3.1892 0 0 726.3221128962332 0 726.3221128962332 0 37.250547101681875 0 0 0 0.8807196863200843 0 0 0 RET{M(Oxidation (M))|F} 3.1892 - 9 NaN NaN 108418.7 NaN 19254 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23507 93.298 NaN 107380 35 0 16523 0.264 + 23082 REKQRNRKKQ 10 58 457.60797884175486 1369.8021071254645 3 457.60821533203125 MULTI HCD FTMS 0 0 0 23502 18875.33984375 0.17989658366455252 25 -0.624053955078125 5 Unmodified _REKQRNRKKQ_ REV__ENST00000310123.7_1_19:35625842-35625896:-|nuORF 0.15932191953741626 0.4744603884079788 1 [YE]{M(Oxidation (M))|F} 3 -1 24.437 0 0 1.784 0 0 0 927.6062202448583 927.6062202448583 24.436974992327123 0 0 0 0 0 1.6989700043360187 0 0 [YE]{M(Oxidation (M))|F} 1.784 - 12 NaN NaN 118053.3 NaN 19255 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23508 93.301 NaN 96070 35 0 12816 0.261 + 11449 IYQEVWNLF 9 40 606.3083799907627 1210.6022070483252 2 606.309326171875 MULTI HCD FTMS 0 0 0 23502 19179.9296875 0.02286827518189131 24 -0.6080398559570312 6 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 8.155526934196011 0.2891920862272901 1 W 1 8 16.99 0 0 1.4034 0 0 632.3181685220212 389.1826571100219 1021.5008256320432 0 0 0 0 0 1 0 0 0 + W 1.4034 + + 16 + NaN NaN 100498.2 NaN 19256 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23509 93.305 NaN 117320 35 0 13413 0.261 + 35009 YTAFLYNDQL 10 39 624.303226324244 1246.5918997152878 2 624.303955078125 MULTI HCD FTMS 0 0 0 23502 18532.96875 0.385763962970094 -1 0.026214599609375 7 Unmodified _YTAFLYNDQL_ ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF 10.150570793230772 0.4161670024087991 1 G{I|L}[C(Carbamidomethyl (C))R]V{[MS]|[{M(Oxidation (M))|F}A]} 7 9 43.996 0 0 3.5293 0 0 425.19537070193047 0 425.19537070193047 0 42.402500735702304 0 0 0 2.5 0 0 0 G{I|L}[C(Carbamidomethyl (C))R]V{[MS]|[{M(Oxidation (M))|F}A]} 3.5293 - 50 + NaN NaN 99539.6 NaN 19257 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23510 93.308 NaN 82383 35 0 15443 0.262 + -1 CSIRLEIF 8 28 511.7707006058695 1021.526848278539 2 511.7699279785156 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CSIRLEIF_ REV__ENST00000374580.8_1_2:203426516-203426621:+|nuORF 7.289230182591677 0.5311777711368266 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5422 0 0 743.3654630981091 0 743.3654630981091 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5422 + + 4 NaN NaN 89554.6 NaN 19258 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23511 93.311 NaN 55196 35 0 14187 0.261 -1 GRQQPFMVFI 10 21 619.8211691983357 1237.6277854634714 2 619.8215942382812 MULTI HCD FTMS 0 0 0 23502 14298.4833984375 0.1390802536538466 9 -0.2127532958984375 9 Oxidation (M) _GRQQPFM(Oxidation (M))VFI_ ENSG00000182330|ENST00000357367|PRAMEF8;ENSG00000204510|ENST00000697200|PRAMEF7 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86436.6 NaN 19259 4250 23502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23513 93.316 NaN 412980 35 0 72344 0.327 + 30642 VPDPFFVEL 9 59 531.7799991395873 1061.5454453459745 2 531.7789916992188 MULTI HCD FTMS 0 0 0 23512 201504.328125 0.12381838360876443 8 -0.1798248291015625 1 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 49.93300154707207 0.03166451819912738 1 {M(Oxidation (M))|F}VE{I|L} 4 5 42.493 0 0 4.0029 0 0 555.2695277757143 0 555.2695277757143 0 33.54039720691517 0 0 0 1.2059771852360797 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.0029 + + 91 NaN NaN 142371.7 NaN 19260 4251 23512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23514 93.321 NaN 132600 35 0 12160 0.261 + 25894 SNISVYTFVSM 11 43 624.303226324244 1246.5918997152878 2 624.806640625 MULTI HCD FTMS 0 0 0 23512 29489.931640625 0.4893300390800436 -2 0.05914306640625 2 Unmodified _SNISVYTFVSM_ REV__ENSG00000138650|ENST00000264360|PCDH10;REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 8.97624648632007 0.3788720818291249 1 {I|L}{M(Oxidation (M))|F}V{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 32.012 0 0 2.5679 0 0 651.2903993264191 0 651.2903993264191 0 22.574549078045308 0 0 0 1.5 0 0 0 {I|L}{M(Oxidation (M))|F}V{[MS]|[{M(Oxidation (M))|F}A]} 2.5679 - 73 + NaN NaN 104654.6 NaN 19261 4251 23512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23515 93.324 NaN 61689 35 0 4304.5 0.264 + 21063 PLWGPGGPE 9 45 455.2253708018938 NaN 0 455.22540283203125 PEAK HCD FTMS 0 0 0 23512 27443.66015625 0.5489239357043701 30 -0.6773910522460938 3 Unmodified _PLWGPGGPE_ REV__ENSG00000137834|ENST00000288840|SMAD6;REV__nc|ENSG00000137834|O43541-4|SMAD6 8.593279151180031 0.2536050107310812 1 {I|L} 1 -1 3.9794 0 0 0.43805 0 0 585.215285205547 207.11399255924064 792.3292777647877 0 0 0 0 0 0 0 0 0 {I|L} 0.43805 + + 4 + NaN NaN 96288.7 NaN 19262 4251 23512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23516 93.327 NaN 272500 35 0 22243 0.261 + 5956 FPDPVVQWL 9 63 550.7923660822415 1099.570179231283 2 550.7918701171875 MULTI HCD FTMS 0 0 0 23512 73486.1171875 0.40666027681295885 -5 0.1443634033203125 4 Unmodified _FPDPVVQWL_ ENSG00000144120|ENST00000272521|TMEM177 27.628801355627647 0.12213550946336599 1 QVQW{I|L} 5 5 41.287 0 0 3.7548 0 0 427.2225514142594 0 427.2225514142594 0 17.985775332874283 0 0 0 1 0 0 0.3494850021680094 QVQW{I|L} 3.7548 - 135 NaN NaN 133910.9 NaN 19263 4251 23512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23518 93.332 NaN 413650 35 0 19433 0.327 -1 0 79 437.2570625673022 1308.7493583021067 3 437.2573547363281 MULTI HCD FTMS 0 0 0 23517 279110.34375 0.6631775744513833 24 -0.5908279418945312 1 NaN NaN 1 Q 1 -1 8.2268 0 0 0.6286 0 0 634.3774105126736 543.3003023736936 1177.6777128863673 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.6286 - 104 + NaN NaN 149974.2 NaN 19264 4252 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23519 93.337 NaN 318750 35 0 67921 0.261 + 34804 YRDFSTFLF 9 48 598.291024852113 1194.5674967710258 2 598.287353515625 MULTI HCD FTMS 0 0 0 23517 197989.984375 0.22234868592508647 -17 0.45046234130859375 2 Unmodified _YRDFSTFLF_ ENST00000326764.9_2_19:54972187-54972391:+|nuORF 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 31.198 0 0 2.6116 0 0 769.3262266329531 0 769.3262266329531 0 17.685690803236298 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.6116 + + 22 NaN NaN 124583.3 NaN 19265 4252 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23520 93.34 NaN 315690 35 0 48680 0.261 -1 IYSLMPLLL 9 49 539.81440647788 1077.6142600225598 2 539.8147583007812 MULTI HCD FTMS 0 0 0 23517 129368.6796875 0.7162536357270927 -4 0.10489654541015625 3 Oxidation (M) _IYSLM(Oxidation (M))PLLL_ ENSG00000151893|ENST00000369151|CACUL1;ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-2|CACUL1;nc|ENSG00000151893|Q86Y37-4|CACUL1 36.04419817259434 0.08350412372117409 1 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}[{I|L}P]{I|L}{I|L} 7 -1 26.769 0 0 2.4841 0 0 276.11094863105626 0 276.11094863105626 0 18.18591006254657 0 0 0 0.9247425010840047 0 0.6307196863200843 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}[{I|L}P]{I|L}{I|L} 2.4841 - 62 NaN NaN 132990.5 NaN 19266 4252 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23521 93.344 NaN 173890 35 0 27592 0.261 -1 0 43 555.292998772262 554.2857223056619 1 555.29248046875 MULTI HCD FTMS 0 0 0 23517 48645.71875 0.3440134665014809 9 -0.2060089111328125 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 2.4346 0 0 389.206588249801 0 389.206588249801 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.4346 - 4 + NaN NaN 126851.1 NaN 19267 4252 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23523 93.349 NaN 498710 35 0 107240 0.327 + 6303 FPFPVTVSL 9 52 503.7840434038367 1005.5535338744734 2 503.78387451171875 MULTI HCD FTMS 0 0 0 23522 177821.0625 0.33478340321477784 10 -0.2388153076171875 1 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 46.020951573049366 0.037705236580089195 1 ETVS{I|L} 5 5 51.013 0 0 5.0732 0 0 458.26884801582656 0 458.26884801582656 0 45.924778212679485 0 0 0 1.2302046884880937 0 0.4247425010840047 0 ETVS{I|L} 5.0732 - 34 NaN NaN 162309.6 NaN 19268 4253 23522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23524 93.353 NaN 390290 35 0 103210 0.261 -1 CSNTCTCKNG 10 50 601.224046163886 1200.4335393945719 2 601.224609375 MULTI HCD FTMS 0 0 0 23522 126609.078125 0.6405986999049338 -3 0.0654449462890625 2 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))SNTC(Carbamidomethyl (C))TC(Carbamidomethyl (C))KNG_ ENSG00000187800|ENST00000292357|PEAR1;ENST00000469390.5_1_1:156877911-156884587:+|nuORF 1.6526216038709556 0.46655611578153744 1 E{M(Oxidation (M))|F} 2 -1 10.177 0 0 0.8478 0 0 906.3149891584 0 906.3149891584 0 4.69273760456403 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 0.8478 - 8 NaN NaN 145292.1 NaN 19269 4253 23522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23525 93.357 NaN 305580 35 0 53923 0.261 + 14591 LFLTFYIK 8 46 522.8120479112209 NaN 0 522.8024291992188 PEAK HCD FTMS 0 0 0 23522 8231.4296875 0.6912875055348623 2 -0.05246734619140625 3 Unmodified _LFLTFYIK_ ENSG00000167895|ENST00000318430|TMC8;nc|ENSG00000167895|Q8IU68-2|TMC8 4.75600775471527 0.38822285293237185 1 QPE 3 8 11.682 0 0 1.1194 0 0 132.11944057566853 554.3349250042551 686.4543655799237 0 0 0 0 0 0 0 0 0 QPE 1.1194 - 18 + NaN NaN 120885.4 NaN 19270 4253 23522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23526 93.36 NaN 85205 35 0 5164.5 0.261 + 7072 FQVKLLYRMR 10 50 451.93248683120106 1352.7756310938032 3 451.9327697753906 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 1.5922808571145555 0.4668755089467872 1 R 1 -1 12.218 0 0 0.90322 0 0 1178.6662541180203 0 1178.6662541180203 0 5.228787452803374 0 0 0 0 0 0 0 R 0.90322 + + 6 + NaN NaN 103903.3 NaN 19271 4253 23522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23527 93.363 NaN 102180 35 0 12730 0.261 + 28940 TWYPVSIPAF 10 40 590.8052199146704 1179.5958868961407 2 590.8057861328125 MULTI HCD FTMS 0 0 0 23522 32863.765625 0.021584414387063183 52 -1.1152420043945312 5 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 18.1463463914782 0.3413772152514074 1 [W{M(Oxidation (M))|F}]{I|L} 3 8 18.2 0 0 1.5429 0 0 0 730.3201387994749 730.3201387994749 9.34833115752497 0 0 0 0 0.9247425010840047 0 0 0 [W{M(Oxidation (M))|F}]{I|L} 1.5429 - 34 + NaN NaN 94336 NaN 19272 4253 23522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23528 93.367 NaN 88990 35 0 11579 0.261 + 19709 NYAFLYGVF 9 48 547.2714438311455 1092.5283347290908 2 547.7835693359375 MULTI HCD FTMS 0 0 0 23522 5924.57470703125 0.4828325936032823 -1 0.01627349853515625 6 Unmodified _NYAFLYGVF_ ENSG00000163328|ENST00000392552|GPR155 11.640296217721598 0.25978676193971967 1 YR{M(Oxidation (M))|F} 3 7 27.167 0 0 2.4866 0 0 608.2963734357437 0 608.2963734357437 0 27.1669877129645 0 0 0 0.8494850021680094 0 0 0 YR{M(Oxidation (M))|F} 2.4866 - 19 NaN NaN 94101 NaN 19273 4253 23522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23530 93.372 NaN 2872700 35 0 798560 0.327 + 6103 FPEGLFYEF 9 59 574.7685864343971 1147.522619935594 2 574.7689208984375 MULTI HCD FTMS 0 0 0 23529 2163185 0.6678791717555422 -2 0.03919219970703125 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 103.74828524460852 0.00396301343438984 1 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 95.653 0 0 8.3356 8.3356 96.081 0 0 0 17.728787452803374 70.91682737491105 17.728787452803374 32.245462655597095 0 2.805462187404089 0 1.5994850021680094 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.3356;5.5256 -;- 202 NaN NaN 518718.3 NaN 19274 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23531 93.376 NaN 157260 35 0 31381 0.262 + 10294 ILAAPVAVVI 10 22 483.32328102459905 964.6320091159981 2 483.3232727050781 MULTI HCD FTMS 0 0 0 23529 116564.6953125 0.0846473220996425 25 -0.5895767211914062 2 Unmodified _ILAAPVAVVI_ REV__ENSG00000174339|ENST00000307832|OR2Y1 12.531546534597751 0.39389615866941496 1 VV{I|L} 3 -1 31.198 0 0 3.2342 0 0 635.3998280255875 0 635.3998280255875 0 22.614393726401687 0 0 0 0.5 0 0 0 VV{I|L} 3.2342 + + 7 NaN NaN 105678.1 NaN 19275 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23532 93.38 NaN 579410 35 0 76267 0.261 + 5788 FPATPLLDYAL 11 64 610.8319431543791 1219.6493333755582 2 610.831787109375 MULTI HCD FTMS 0 0 0 23529 150857.765625 0.5411066671329593 -2 0.03919219970703125 3 Unmodified _FPATPLLDYAL_ ENSG00000131473|ENST00000352035|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF;nc|ENSG00000131473|P53396-2|ACLY;nc|ENSG00000131473|P53396-3|ACLY 61.60191391372663 0.033776152178474975 1 P{I|L}{I|L}DYA{I|L} 7 4 64.755 0 0 5.3093 0 0 416.20601088691564 0 416.20601088691564 0 57.765479208542914 0 0 0 2.0994850021680094 0 0.805462187404089 0 + P{I|L}{I|L}DYA{I|L} 5.3093 + + 119 NaN NaN 168586.2 NaN 19276 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23533 93.383 NaN 389570 35 0 27495 0.261 + 5090 FEFEPFLQ 8 69 528.7555912140499 1055.4966294948997 2 528.7555541992188 MULTI HCD FTMS 0 0 0 23529 155662.78125 0.0661612632852246 11 -0.27490997314453125 4 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 61.357469665136826 0.05745689244596827 1 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 49.984 0 0 4.7356 4.7356 86.565 0 0 0 5.083559388717376 5.083559388717376 5.083559388717376 9.262137858390815 0 1.7984550065040281 0 0.2614393726401688 0 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{[VA]|[{I|L}G]}{[MS]|[{M(Oxidation (M))|F}A]};MKG[HT][HQ]{[MS]|[{M(Oxidation (M))|F}A]} 4.7356;3.8581;1.3791;1.1197;0.74849 -;-;-;-;- 454 NaN NaN 134837.3 NaN 19277 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23534 93.386 NaN 459140 35 0 100200 0.261 -1 FESYYFPMS 9 54 593.7421304297962 1185.4697079263924 2 593.7421264648438 MULTI HCD FTMS 0 0 0 23529 107019.046875 0.7962750770963547 -3 0.0554351806640625 5 Oxidation (M) _FESYYFPM(Oxidation (M))S_ CON__Q2TBQ1 11.640296217721598 0.25978676193971967 1 PEE 3 -1 30.445 0 0 2.5682 0 0 812.3068104474625 0 812.3068104474625 0 6.73393743112328 0 0 0 0 0 0.4247425010840047 0 PEE 2.5682 - 28 NaN NaN 170007 NaN 19278 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23535 93.39 NaN 271760 35 0 20071 0.261 + 27020 SYLQYLEYL 9 59 596.3002766236732 1190.5860003141463 2 596.7841186523438 MULTI HCD FTMS 0 0 0 23529 47249.296875 0.029565450629929456 18 -0.4583587646484375 6 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 40.23920728925047 0.06424668180817725 1 [YT]VQY{I|L}EY{I|L} 9 2 + 43.063 0 0 3.6169 3.6169 80.843 0 0 0 1.854640871443749 19.161772202409466 1.854640871443749 3.0102999566398125 0 1.7302046884880937 0 0 0 [YT]VQY{I|L}EY{I|L};[Y{I|L}]SQY{I|L}EY{I|L};[YT]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}EY{I|L};[YT]V[AG]Y{I|L}EY{I|L};[Y{I|L}]G{[SA]|[TG]}Y{I|L}EY{I|L};[Y{I|L}]S[AG]Y{I|L}EY{I|L} 3.6169;3.3641;3.0342;2.8435;2.7621;2.5907 -;-;-;-;-;- 477 NaN NaN 123639.5 NaN 19279 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23536 93.393 NaN 113040 35 0 15094 0.262 + 33019 YCDSFCLF 8 44 499.19298779485746 996.3714226565149 2 499.193603515625 MULTI HCD FTMS 0 0 0 23529 59390.8828125 0.5897672795554593 -1 0.022918701171875 7 Unmodified _YCDSFCLF_ REV__ENST00000265362.8_1_7:83824036-83824144:-|nuORF 2.8892196856762586 0.5377058178582064 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7052 0 0 831.2924564473337 0 831.2924564473337 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7052 + + 9 + NaN NaN 107260.7 NaN 19280 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23537 93.396 NaN 116840 35 0 16924 0.261 + -1 MVIIMLVM 8 43 491.2624916712135 NaN 0 491.2738342285156 PEAK HCD FTMS 0 0 0 23529 6718.47802734375 0.4461680074730978 2 -0.05242919921875 8 2 Oxidation (M) _M(Oxidation (M))VIIMLVM(Oxidation (M))_ REV__ENSG00000101290|ENST00000460006|CDS2;REV__ENST00000467923.5_1_20:5107766-5163790:+|nuORF;REV__ENST00000468817.5_1_20:5109393-5167506:+|nuORF;REV__nc|ENSG00000101290|O95674-2|CDS2 11.114462752807354 0.38822285293237185 1 {I|L}V 2 -1 10.969 0 0 1.1187 0 0 603.279150967624 162.05599390201408 765.335144869638 0 0 0 0 0 0 0 0 0 {I|L}V 1.1187 + + 9 + NaN NaN 101390.1 NaN 19281 4254 23529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23539 93.401 NaN 532770 35 0 56696 0.327 + 26146 SPMDIFDMF 9 71 559.7300779556351 1117.4456029780702 2 559.73046875 MULTI HCD FTMS 0 0 0 23538 220749.609375 0.7284319968239319 4 -0.09484100341796875 1 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 100.37149154755038 0.004254194004462789 1 S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 73.18 0 0 6.5489 0 0 343.11912734199376 0 343.11912734199376 0 61.22486274231747 0 0 0 2.3494850021680094 0 1.1549471895720984 0 S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.5489 - 295 NaN NaN 186736.5 NaN 19282 4255 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23540 93.406 NaN 623940 35 0 67570 0.261 + 3433 EFLPFHFLL 9 74 581.8182916320501 1161.6220303309 2 581.8184814453125 MULTI HCD FTMS 0 0 0 23538 257700.03125 0.6782226200671594 -1 0.02954864501953125 2 Unmodified _EFLPFHFLL_ ENSG00000227057|ENST00000374617|WDR46 98.80718514221951 0.0042951848413998895 1 [{M(Oxidation (M))|F}E]{I|L}P{M(Oxidation (M))|F}H{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 32.91 0 0 2.8331 2.8331 79.347 0 0 0 6.343115646969942 0.8804562952784067 0.8804562952784067 0.8804562952784067 0 0.8807196863200843 0 0 0 [{M(Oxidation (M))|F}E]{I|L}P{M(Oxidation (M))|F}H{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}P{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{I|L}{I|L} 2.8331;2.7573 -;+ + 233 + NaN NaN 178240.2 NaN 19283 4255 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23541 93.409 NaN 210130 35 0 29684 0.261 + 35902 YYSSPFAFF 9 41 564.7554103098014 1127.4962676864027 2 564.7553100585938 MULTI HCD FTMS 0 0 0 23538 30368.40625 0.48273661807081253 -1 0.02954864501953125 3 Unmodified _YYSSPFAFF_ ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF;ENST00000492084.5_1_6:31654991-31670409:-|nuORF 38.15118350030904 0.07383188072201104 1 A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.2105 0 0 744.3141825807371 0 744.3141825807371 0 15.228787452803374 0 0 0 1 0 0 0 + A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2105 + + 32 + NaN NaN 121792.6 NaN 19284 4255 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23542 93.412 NaN 373410 35 0 72512 0.261 -1 0 47 544.3327276649953 543.3254511983953 1 544.3331909179688 MULTI HCD FTMS 0 0 0 23538 75622.4921875 0.6563494558357097 -1 0.02954864501953125 4 NaN NaN 1 [EP]G{I|L} 4 -1 6.6555 0 0 1.2249 0 0 0 144.10289195450778 144.10289195450778 4.436974992327126 0 0 0 0 0 0 0 0 [EP]G{I|L} 1.2249 - 17 NaN NaN 142415.2 NaN 19285 4255 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23543 93.416 NaN 173590 35 0 42427 0.261 -1 IYGLGLCGLF 10 51 556.7927943715707 1111.5710358099413 2 556.7926635742188 MULTI HCD FTMS 0 0 0 23538 57439.2109375 0.6253236455282611 -3 0.0687408447265625 5 Carbamidomethyl (C) _IYGLGLC(Carbamidomethyl (C))GLF_ ENSG00000136297|ENST00000401401|MMD2;nc|ENSG00000136297|Q8IY49-3|MMD2;nc|ENSG00000136297|Q8IY49|MMD2 18.13498045792455 0.3414835283589826 1 Q{M(Oxidation (M))|F}P{I|L} 4 -1 28.276 0 0 2.5438 0 0 608.2870350568375 0 608.2870350568375 0 -0.8534811358448735 -0.8534811358448735 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F}P{I|L} 2.5438 - 156 NaN NaN 105226.9 NaN 19286 4255 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23544 93.419 NaN 64463 35 0 5187.8 0.261 + 5778 FPASFVSDFIL 11 44 621.822551788592 NaN 0 621.822021484375 PEAK HCD FTMS 0 0 0 23538 12551.619140625 0.38573730390144895 -2 0.05246734619140625 6 Unmodified _FPASFVSDFIL_ REV__SAMM50|p.S317P|1|0.17|ENSG00000100347|chr22:43981403-43981403|T/C|missense_variant 12.240655878213236 0.3073969278659688 1 PAT 3 -1 26.995 0 0 2.1741 0 0 147.06777191443945 822.4001558893186 969.4679278037581 0 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 PAT 2.1741 - 12 + NaN NaN 94973.2 NaN 19287 4255 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23546 93.424 NaN 719540 35 0 119650 0.327 -1 0 84 585.7595504324721 1169.5045479317441 2 585.759765625 MULTI HCD FTMS 0 0 0 23545 478744.625 1 0 0 1 NaN NaN 1 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 75.75 0 0 6.4771 0 0 316.1031971662125 0 316.1031971662125 0 37.473797812536915 0 0 0 2.2302046884880937 0 0.7742275032520141 0 Y{M(Oxidation (M))|F}{I|L}GEPE 6.4771 - 832 NaN NaN 188605.5 NaN 19288 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23547 93.428 NaN 645590 35 0 67269 0.261 + 11126 IYILDPELL 9 62 544.8155806725092 1087.6166084118183 2 544.8157348632812 MULTI HCD FTMS 0 0 0 23545 227635.578125 0.64557392080548 -5 0.1078643798828125 2 Unmodified _IYILDPELL_ ENSG00000149091|ENST00000456247|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ 64.23631603340823 0.01165516075559909 1 [Y{I|L}]{I|L}{I|L}D[EP]{I|L}{I|L} 9 0 + 61.532 0 0 5.6575 5.6575 92.527 0 0 0 15.20181229336984 52.86007564130905 15.20181229336984 61.53221333259346 0 2.110924374808178 1.154901959985743 0 0 + + [Y{I|L}]{I|L}{I|L}D[EP]{I|L}{I|L} 5.6575 + + 138 NaN NaN 186363.3 NaN 19289 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23548 93.432 NaN 481700 35 0 36493 0.261 -1 0 91 516.3142569266997 1030.6139609201994 2 516.314697265625 MULTI HCD FTMS 0 0 0 23545 212171.78125 0.22708638952716376 -7 0.1670074462890625 3 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RP][R{I|L}]V{M(Oxidation (M))|F} 8 -1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RP][R{I|L}]V + + 12.764 -16.695 -1.9289 1.2385 1.2385 58.83 0 0 0 0 -1.4760373017531592 -1.4760373017531592 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RP][R{I|L}]V{M(Oxidation (M))|F} 1.2385 - 426 + NaN NaN 169777.3 NaN 19290 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23549 93.435 NaN 342230 35 0 20929 0.261 + 7809 FYPTLLYTL 9 70 565.8101982037683 1129.6058434743366 2 566.2973022460938 MULTI HCD FTMS 0 0 0 23545 34274.265625 0.33897285439308095 -5 0.1078643798828125 4 Unmodified _FYPTLLYTL_ ENSG00000110536|ENST00000326674|PTPMT1;nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1 6.723162845929126 0.3000504726104499 1 Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WSA{I|L} 7 7 20.009 0 0 1.7713 0 0 232.14125258613439 0 232.14125258613439 0 3.8113767175585167 0 0 0 0.5 0 0 0 Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WSA{I|L} 1.7713 - 770 NaN NaN 148007.8 NaN 19291 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23550 93.439 NaN 67006 35 0 16121 0.261 + -1 LEKLNKMKVF 10 35 633.3691435624123 1264.7237341916245 2 633.3709106445312 MULTI HCD FTMS 0 0 0 23545 29850.3125 0.6260061307260721 -4 0.09162139892578125 5 Oxidation (M) _LEKLNKM(Oxidation (M))KVF_ REV__ENSG00000144749|ENST00000273261|LRIG1;REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF;REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF;REV__nc|ENSG00000144749|Q96JA1-2|LRIG1 2.735195868890462 0.4608258780945842 1 M 1 -1 7.2185 0 0 0.57076 0 0 763.466209632834 367.1959627740844 1130.6621724069184 0 0 0 0 0 0.5 0 0 0 M 0.57076 + + 5 + NaN NaN 96018.3 NaN 19292 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23551 93.442 NaN 93870 35 0 11129 0.261 + 33375 YGIIFACGCSF 11 38 590.7636388694079 NaN 0 590.762451171875 PEAK HCD FTMS 0 0 0 23545 15189.353515625 0.5050340411540828 -1 0.02288055419921875 6 Unmodified _YGIIFACGCSF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF;SLC16A10|p.I205Cfs*15|1|0.08|ENSG00000112394|chr6:111177336-111177355|ATTGTCACTGCTGGCAGCAG/-|frameshift_variant 3.2813086475875832 0.3328120158028032 1 R{M(Oxidation (M))|F} 2 10 20.217 0 0 1.714 0 0 333.0848816976417 540.2473848932249 873.3322665908665 0 0 0 0 0 0.9247425010840047 0 0 0 R{M(Oxidation (M))|F} 1.714 - 31 + NaN NaN 101501.6 NaN 19293 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23552 93.445 NaN 49893 35 0 8590.8 0.261 + -1 PRRSCCPHC 9 28 586.747685273765 1171.48081761433 2 588.2059936523438 MULTI HCD FTMS 0 0 0 23545 21719.03125 0.9726239637796728 -4 0.09162139892578125 7 2 Carbamidomethyl (C) _PRRSCC(Carbamidomethyl (C))PHC(Carbamidomethyl (C))_ REV__ENST00000504435.1_1_4:887824-888280:-|nuORF 0.6014990680409731 0.3464572424761564 1 W 1 -1 3.9794 0 0 0.33969 0 0 606.23272298718 376.1544901876172 982.3872131747971 0 0 0 0 0 0 0 0 0 W 0.33969 - 5 + NaN NaN 91373.6 NaN 19294 4256 23545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23554 93.45 NaN 200590 35 0 32267 0.327 -1 NYLPFIMEL 9 49 578.2912249331946 1154.567896933189 2 578.290771484375 MULTI HCD FTMS 0 0 0 23553 71419.0390625 0.03517208999610945 47 -0.9909286499023438 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 31.26834338654808 0.10542797264966089 1 N{I|L}{M(Oxidation (M))|F}E{I|L} 5 -1 41.186 0 0 3.5672 0 0 520.2564564435562 0 520.2564564435562 0 25.728050365394424 0 0 0 0.7742275032520141 0 0 0 N{I|L}{M(Oxidation (M))|F}E{I|L} 3.5672 - 71 NaN NaN 113975.6 NaN 19295 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23555 93.455 NaN 226850 35 0 15481 0.261 -1 0 68 524.8272591066905 1047.6399652801808 2 524.8275146484375 MULTI HCD FTMS 0 0 0 23553 204450.640625 0.32282534948705055 -6 0.13405609130859375 2 NaN NaN 1 D 1 -1 8.9794 0 0 0.85711 0 0 105.08025549064696 824.486951406608 929.567206897255 0 0 0 0 0 0.5 0 0 0 D 0.85711 - 15 + NaN NaN 113210.3 NaN 19296 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23556 93.458 NaN 160600 35 0 22686 0.261 + 30643 VPDPFFVEL 9 46 531.7799991395873 1061.5454453459745 2 531.7788696289062 MULTI HCD FTMS 0 0 0 23553 77816.9296875 0.04781617616335319 14 -0.36692047119140625 3 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 30.636539890814138 0.10832830463492794 1 {M(Oxidation (M))|F}VE{I|L} 4 5 43.488 0 0 4.0966 0 0 555.2673207013687 0 555.2673207013687 0 36.49797211252192 0 0 0 1.1549471895720984 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.0966 + + 24 NaN NaN 125049 NaN 19297 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23557 93.461 NaN 127840 35 0 9167.5 0.261 + 7735 FYLYTVNIL 9 47 573.3157735568496 1144.6169941804992 2 573.3156127929688 MULTI HCD FTMS 0 0 0 23553 25154.751953125 0.3817420913029705 1 -0.0262298583984375 4 Unmodified _FYLYTVNIL_ ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF 17.11289562659939 0.2125047172822487 1 PTVQV{I|L} 6 6 35.182 0 0 3.0737 0 0 489.2301197736344 0 489.2301197736344 0 25.718421963928435 0 0 0 0.7302046884880937 0 0 0 PTVQV{I|L} 3.0737 - 63 NaN NaN 107106.2 NaN 19298 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23558 93.465 NaN 161880 35 0 26013 0.263 + -1 KSSLYSSDRIM 11 50 434.8822913699993 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 23553 58255.16796875 0.5661420523015399 -13 0.33746337890625 5 Oxidation (M) _KSSLYSSDRIM(Oxidation (M))_ REV__ENSG00000176399|ENST00000325870|DMRTA1 1.0135738785822086 0.339244926269168 1 N 1 -1 0.9691 0 0 0.11168 0 0 451.53477209371107 299.15036951236567 750.6851416060767 0 0 0 0 0 0 0 0 0 N 0.11168 - 2 + NaN NaN 97301.7 NaN 19299 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23559 93.468 NaN 34733 35 0 4203.1 0.261 + 15209 LNKSRYLLYI 10 30 641.8826173289472 NaN 0 641.8824462890625 PEAK HCD FTMS 0 0 0 23553 40495.75 1 0 0 6 Unmodified _LNKSRYLLYI_ REV__tr|U7SGK1|U7SGK1_FUSNUVanZ-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02214PE=4SV=1 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89762.2 NaN 19300 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23560 93.471 NaN 75449 35 0 10450 0.263 + 20589 PEKMKKDF 8 30 511.7707006058695 1021.526848278539 2 512.2720336914062 MULTI HCD FTMS 0 0 0 23553 14429.3564453125 0.5555591442297866 3 -0.0686492919921875 7 Unmodified _PEKMKKDF_ ENSG00000197181|ENST00000356766|PIWIL2;nc|ENSG00000197181|Q8TC59-2|PIWIL2;PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;PPP3CC-PIWIL2|1|fusion 7.289230182591677 0.5311777711368266 1 {I|L}{M(Oxidation (M))|F} 2 7 25.969 0 0 2.5422 0 0 743.3614369123062 0 743.3614369123062 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5422 - 14 NaN NaN 90788.7 NaN 19301 4257 23553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23562 93.476 NaN 298760 35 0 18023 0.327 -1 0 75 437.2570625673022 1308.7493583021067 3 437.2574157714844 MULTI HCD FTMS 0 0 0 23561 210587.875 0.5003653905297843 30 -0.619049072265625 1 NaN NaN 1 N{[HG]|PP}N 4 -1 20.177 0 0 1.5417 0 0 868.4907093732437 0 868.4907093732437 0 13.187587626244124 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.5417 - 39 NaN NaN 127442.9 NaN 19302 4258 23561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23563 93.481 NaN 342740 35 0 70584 0.261 + 34805 YRDFSTFLF 9 55 598.291024852113 1194.5674967710258 2 598.2872924804688 MULTI HCD FTMS 0 0 0 23561 171216.78125 0.19228157646174107 -11 0.27181243896484375 2 Unmodified _YRDFSTFLF_ ENST00000326764.9_2_19:54972187-54972391:+|nuORF 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 31.198 0 0 2.6116 0 0 769.3273424197763 0 769.3273424197763 0 15.708253071758875 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.6116 + + 91 NaN NaN 124595.5 NaN 19303 4258 23561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23564 93.484 NaN 520240 35 0 73289 0.261 + 5789 FPATPLLDYAL 11 61 610.8319431543791 1219.6493333755582 2 610.8323364257812 MULTI HCD FTMS 0 0 0 23561 137145.6875 0.4919232733385074 2 -0.04241943359375 3 Unmodified _FPATPLLDYAL_ ENSG00000131473|ENST00000352035|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF;nc|ENSG00000131473|P53396-2|ACLY;nc|ENSG00000131473|P53396-3|ACLY 40.23920728925047 0.13540949088500095 1 P{I|L}{I|L}DYA{I|L} 7 4 59.149 0 0 4.8497 0 0 416.2054615705094 0 416.2054615705094 0 53.66450752962287 0 0 0 2.1237125054200234 0 0.4247425010840047 0 + P{I|L}{I|L}DYA{I|L} 4.8497 + + 142 NaN NaN 178956.1 NaN 19304 4258 23561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23565 93.488 NaN 311200 35 0 46277 0.262 -1 IYSLMPLLL 9 66 539.81440647788 1077.6142600225598 2 539.814697265625 MULTI HCD FTMS 0 0 0 23561 91521.8828125 0.5067136919955438 2 -0.04241943359375 4 Oxidation (M) _IYSLM(Oxidation (M))PLLL_ ENSG00000151893|ENST00000369151|CACUL1;ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-2|CACUL1;nc|ENSG00000151893|Q86Y37-4|CACUL1 28.486842064014134 0.11819662193267319 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{M(Oxidation (M))|F}[{I|L}P]{I|L}{I|L} 9 -1 + 35.806 0 0 3.3227 3.3227 88.381 0 0 0 6.865677915492519 25.100906146684924 6.865677915492519 35.805840530896596 0 1.242992819099939 0 0.3252574989159953 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{M(Oxidation (M))|F}[{I|L}P]{I|L}{I|L} 3.3227 - 217 NaN NaN 128850.8 NaN 19305 4258 23561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23566 93.491 NaN 50740 35 0 8815.3 0.261 + -1 LEKLNKMKVF 10 32 633.3691435624123 1264.7237341916245 2 633.3692626953125 MULTI HCD FTMS 0 0 0 23561 42553.46484375 0.8924104186789964 -2 0.05242156982421875 5 Oxidation (M) _LEKLNKM(Oxidation (M))KVF_ REV__ENSG00000144749|ENST00000273261|LRIG1;REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF;REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF;REV__nc|ENSG00000144749|Q96JA1-2|LRIG1 2.735195868890462 0.4608258780945842 1 R 1 -1 3.9794 0 0 0.31465 0 0 650.3359911269746 455.25031458072505 1105.5863057076997 0 0 0 0 0 0 0 0 0 R 0.31465 - 1 + NaN NaN 102598.4 NaN 19306 4258 23561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23568 93.496 NaN 541490 35 0 104280 0.327 + 6616 FPLSELVEF 9 57 540.7842954187153 1079.5540379042304 2 540.784423828125 MULTI HCD FTMS 0 0 0 23567 188300.984375 0.8766271823274188 -1 0.01953887939453125 1 Unmodified _FPLSELVEF_ ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-2|NOP2;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-4|NOP2 43.85829265575387 0.04763305254408404 1 {I|L}VE{M(Oxidation (M))|F} 4 5 53.175 0 0 4.9257 0 0 573.2797824775192 0 573.2797824775192 0 32.2062251842808 0 0 0 1.9247425010840047 0 0.5 0 + {I|L}VE{M(Oxidation (M))|F} 4.9257 + + 323 + NaN NaN 176030.8 NaN 19307 4259 23567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23569 93.5 NaN 536890 35 0 144190 0.261 + -1 CNCLSDCSGRS 11 64 601.224046163886 1200.4335393945719 2 601.2244873046875 MULTI HCD FTMS 0 0 0 23567 121805.0546875 0.616291981824758 3 -0.06526947021484375 2 Carbamidomethyl (C) _CNC(Carbamidomethyl (C))LSDCSGRS_ REV__ENSG00000184564|ENST00000647374|SLITRK6;REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant;REV__SLITRK6|p.N818Kfs*2|1|0.07|ENSG00000184564|chr13:85794055-85794056|-/T|frameshift_variant 2.0860074813731053 0.4097721463192591 1 E 1 -1 10.485 0 0 0.8734 0 0 631.2169389080469 437.14411340885005 1068.361052316897 0 0 0 0 0 0.5 0 0 0 E 0.8734 - 20 + NaN NaN 170226.9 NaN 19308 4259 23567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23570 93.504 NaN 697430 35 0 74504 0.261 + 5957 FPDPVVQWL 9 90 550.7923660822415 1099.570179231283 2 551.2843017578125 MULTI HCD FTMS 0 0 0 23567 36344.7734375 0.42468739068167893 3 -0.06526947021484375 3 Unmodified _FPDPVVQWL_ ENSG00000144120|ENST00000272521|TMEM177 41.8396318013385 0.056899836730939755 1 [YT][YK]VQW{I|L} 8 5 + 46.872 0 0 4.2628 4.2628 82.756 0 0 0 5.59000016710641 16.40978057358332 5.59000016710641 5.59000016710641 0 0.9247425010840047 1.5228787452803376 0 0 [YT][YK]VQW{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[VP]VQW{I|L};[YT][YK]V[AG]W{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[VP]V[AG]W{I|L};[YT][YK]WN{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[VP]WN{I|L}{I|L};[YT][YK]WGG{I|L}{I|L};[Y{I|L}]{[QN]|[E{I|L}]|[KN]}[YT]W{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[VP]WGG{I|L}{I|L} 4.2628;3.7544;3.4204;2.9169;2.8105;2.3021;1.9681;1.5552;1.4646 -;+;-;-;-;-;-;-;- + 1636 NaN NaN 194703.5 NaN 19309 4259 23567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23571 93.507 NaN 378750 35 0 75197 0.261 + 29439 TYTFKQPVF 9 61 565.7959754514781 NaN 0 565.8104858398438 PEAK HCD FTMS 0 0 0 23567 29386.94140625 1 0 0 4 Unmodified _TYTFKQPVF_ ENSG00000183337|ENST00000378444|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 15.847184025352803 0.21527282152051216 1 {M(Oxidation (M))|F}T 2 8 11.242 0 0 0.99526 0 0 617.3498721902623 261.08783899478755 878.4377111850499 0 0 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}T 0.99526 - 129 + NaN NaN 141342.3 NaN 19310 4259 23567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23572 93.511 NaN 95735 35 0 6533.4 0.262 -1 MKRLYVRPKF 10 48 451.93248683120106 1352.7756310938032 3 451.93243408203125 MULTI HCD FTMS 0 0 0 23567 78088.078125 0.10874949538135766 -29 0.7385711669921875 5 Oxidation (M) _M(Oxidation (M))KRLYVRPKF_ tr|U7T281|U7T281_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00582PE=4SV=1 0.6268255596534771 0.47198581731947004 1 K 1 -1 1.5938 0 0 0.11782 0 0 850.4764195232939 371.1711519830688 1221.6475715063627 0 0 0 0 0 0 0 0 0 K 0.11782 + + 2 + NaN NaN 103667.5 NaN 19311 4259 23567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23573 93.514 NaN 37136 35 0 4175.2 0.261 + 22128 QILLRFLHFP 10 32 642.3842023536439 NaN 0 642.3853759765625 PEAK HCD FTMS 0 0 0 23567 6344.5185546875 0.37115750551127263 1 -0.02288055419921875 6 Unmodified _QILLRFLHFP_ REV__ENSG00000036054|ENST00000394144|TBC1D23;REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF;REV__nc|ENSG00000036054|Q9NUY8-2|TBC1D23 0.45834013312273997 0.33979201340002624 1 {I|L} 1 -1 5.4846 0 0 0.42756 0 0 545.3965042172503 621.2504976861936 1166.6470019034439 0 0 0 0 0 0 0 0 0 {I|L} 0.42756 + + 1 + NaN NaN 85032.5 NaN 19312 4259 23567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23575 93.519 NaN 3262400 35 0 918570 0.327 + 6104 FPEGLFYEF 9 67 574.7685864343971 1147.522619935594 2 574.7689208984375 MULTI HCD FTMS 0 0 0 23574 2431425.5 0.750697905692442 4 -0.09479522705078125 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 115.6920309560759 0.002013163348980568 1 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 95.213 0 0 8.2973 8.2973 93.962 0 0 0 13.6665018407422 16.478174818886373 13.6665018407422 13.6665018407422 0 2.805462187404089 0 1.555462187404089 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS][YV]YE{M(Oxidation (M))|F};{[ET]|[MV]}[TP]P[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.2973;7.1063;5.4873;4.2963;2.5778;1.5223 -;+;-;-;-;- + 345 NaN NaN 546374.7 NaN 19313 4260 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23576 93.523 NaN 209190 35 0 42920 0.262 + 22338 QPLIIAVVL 9 27 483.32328102459905 964.6320091159981 2 483.3233642578125 MULTI HCD FTMS 0 0 0 23574 84832.6953125 0.06160407716458869 31 -0.6482772827148438 2 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 16.942295170755138 0.21397866736869717 1 R{[VA]|[{I|L}G]}V{I|L} 5 5 30.445 0 0 3.1562 0 0 408.2582264630875 0 408.2582264630875 0 30.445312593723983 0 0 0 0.9247425010840047 0 0 0.5 R{[VA]|[{I|L}G]}V{I|L} 3.1562 - 10 NaN NaN 113350.2 NaN 19314 4260 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23577 93.527 NaN 492670 35 0 76199 0.261 + 5790 FPATPLLDYAL 11 66 610.8319431543791 1219.6493333755582 2 610.8320922851562 MULTI HCD FTMS 0 0 0 23574 116037.4453125 0.4162108263736914 4 -0.09479522705078125 3 Unmodified _FPATPLLDYAL_ ENSG00000131473|ENST00000352035|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF;nc|ENSG00000131473|P53396-2|ACLY;nc|ENSG00000131473|P53396-3|ACLY 41.95555342248728 0.1243556816384599 1 K{M(Oxidation (M))|F}DYA{I|L} 6 7 54.998 0 0 4.5093 0 0 464.26317031074376 0 464.26317031074376 0 47.33919093648403 0 0 0 1.1549471895720984 0 0.3807196863200844 0 K{M(Oxidation (M))|F}DYA{I|L} 4.5093 - 150 NaN NaN 161221.2 NaN 19315 4260 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23578 93.53 NaN 268140 35 0 35654 0.261 -1 0 81 533.340480238976 1064.666407544752 2 533.3405151367188 MULTI HCD FTMS 0 0 0 23574 59065.2109375 0.34599860453634607 -7 0.17018890380859375 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.313 0 0 899.5873803004146 0 899.5873803004146 0 10.880456295278407 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.313 - 94 + NaN NaN 118037.8 NaN 19316 4260 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23579 93.533 NaN 71230 35 0 6911.7 0.261 -1 NMQLQIIF 8 41 511.7707006058695 1021.526848278539 2 512.2721557617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _NM(Oxidation (M))QLQIIF_ ENST00000470752.5_1_2:175490576-175494437:-|nuORF 5.230669730166228 0.5342319408533849 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.4685 0 0 743.3610096662125 0 743.3610096662125 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.4685 + + 4 NaN NaN 106889.2 NaN 19317 4260 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23581 93.538 NaN 1158800 35 0 335560 0.327 + 6742 FPQIGELIL 9 48 515.3026291160239 1028.5907052988478 2 515.3029174804688 MULTI HCD FTMS 0 0 0 23580 1176392 1 0 0 1 Unmodified _FPQIGELIL_ ENSG00000163510|ENST00000410053|CWC22 60.07390631473393 0.0174780869009295 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L}GE{I|L}{I|L}{I|L} 9 0 + 73.624 0 0 7.1578 7.1578 91.816 0 0 0 3.2568864632742844 69.02040331657425 3.2568864632742844 12.703037561203843 0 2.305462187404089 0 0.3252574989159953 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L}GE{I|L}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]{I|L}GE{I|L}{I|L}{I|L} 7.1578;5.9228 +;- + 93 NaN NaN 257023.8 NaN 19318 4261 23580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23582 93.543 NaN 541680 35 0 56075 0.261 + 3434 EFLPFHFLL 9 69 581.8182916320501 1161.6220303309 2 581.8182373046875 MULTI HCD FTMS 0 0 0 23580 289417.40625 0.7616973525683903 5 -0.1343536376953125 2 Unmodified _EFLPFHFLL_ ENSG00000227057|ENST00000374617|WDR46 74.39630413441286 0.00766564230304328 1 [{M(Oxidation (M))|F}E]{I|L}PG{M(Oxidation (M))|F}KV{I|L} 9 4 31.379 0 0 2.7013 0 0 0 128.06815149150307 128.06815149150307 7.222346674414343 0 0 0 0 1.492992819099939 0 1.774227503252014 0 [{M(Oxidation (M))|F}E]{I|L}PG{M(Oxidation (M))|F}KV{I|L} 2.7013 - 179 NaN NaN 175405.6 NaN 19319 4261 23580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23583 93.546 NaN 319770 35 0 18064 0.261 + 26147 SPMDIFDMF 9 67 559.7300779556351 1117.4456029780702 2 559.7303466796875 MULTI HCD FTMS 0 0 0 23580 58406.15625 0.19272927886239014 10 -0.27872467041015625 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 43.85829265575387 0.04763305254408404 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 51.216 0 0 4.5834 0 0 430.15063335092015 0 430.15063335092015 0 35.23046501650093 0 0 0 1.9916440611282624 0 0.3252574989159953 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5834 + + 810 + NaN NaN 151949.3 NaN 19320 4261 23580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23584 93.55 NaN 129030 35 0 22381 0.261 + -1 MMPENLCQ 8 44 499.19298779485746 996.3714226565149 2 499.1932373046875 MULTI HCD FTMS 0 0 0 23580 50379.69921875 0.5002838271804732 6 -0.16390228271484375 4 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))PENLCQ_ REV__ENSG00000119403|ENST00000373896|PHF19;REV__ENST00000474402.5_1_9:123628304-123631123:-|nuORF;REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.3147 0 0 831.2924106709665 0 831.2924106709665 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3147 + + 4 + NaN NaN 104494.9 NaN 19321 4261 23580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23585 93.553 NaN 308600 35 0 50291 0.261 -1 LDPAFFQM 8 43 492.73045696240314 NaN 0 492.78662109375 PEAK HCD FTMS 0 0 0 23580 6238.4404296875 1 0 0 5 Oxidation (M) _LDPAFFQM(Oxidation (M))_ ENSG00000142197|ENST00000691173|DOP1B;nc|ENSG00000142197|Q9Y3R5-2|DOP1B 4.3292370932331545 0.38822285293237185 1 Y{M(Oxidation (M))|F} 2 -1 10.969 0 0 1.1154 0 0 130.0454708703549 540.2464405282083 670.2919113985631 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.1154 - 15 + NaN NaN 128579.2 NaN 19322 4261 23580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23586 93.556 NaN 86165 35 0 12462 0.261 + -1 YNIKHFFMK 9 44 622.3168226977734 1242.6190924623468 2 622.3148803710938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 1 [YN]{I|L} 3 -1 37.447 0 0 3.0136 0 0 0 849.4058715973655 849.4058715973655 33.46787486224656 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L} 3.0136 + + 44 NaN NaN 102827.3 NaN 19323 4261 23580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23588 93.561 NaN 769220 35 0 124050 0.327 -1 0 84 585.7595504324721 1169.5045479317441 2 585.7598876953125 MULTI HCD FTMS 0 0 0 23587 279596.4375 0.5840200033577401 6 -0.1606597900390625 1 NaN NaN 1 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 74.003 0 0 6.3277 0 0 316.10374648261876 0 316.10374648261876 0 35.64281341297949 0 0 0 2.1747425010840047 0 0.805462187404089 0 Y{M(Oxidation (M))|F}{I|L}GEPE 6.3277 - 778 NaN NaN 201879 NaN 19324 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23589 93.566 NaN 645070 35 0 77996 0.261 + 11127 IYILDPELL 9 59 544.8155806725092 1087.6166084118183 2 544.8157958984375 MULTI HCD FTMS 0 0 0 23587 149988.125 0.42536594115943377 1 -0.02623748779296875 2 Unmodified _IYILDPELL_ ENSG00000149091|ENST00000456247|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ 46.020951573049366 0.037705236580089195 1 [Y{I|L}]{I|L}{I|L}D[EP]{I|L}{I|L} 9 0 + 50.625 0 0 4.6547 4.6547 84.553 0 0 0 4.762036441594191 40.44794650414076 4.762036441594191 8.507112333562858 0 2.305462187404089 0 0 0 + + [Y{I|L}]{I|L}{I|L}D[EP]{I|L}{I|L};[Y{I|L}]{I|L}D{I|L}[EP]{I|L}{I|L};[Y{I|L}]VE{I|L}[EP]{I|L}{I|L} 4.6547;3.8725;3.0745 +;-;- + 255 NaN NaN 187313.1 NaN 19325 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23590 93.569 NaN 375690 35 0 55292 0.261 + 17231 LYNWEVAIF 9 60 577.7979246033001 1153.5812962734 2 577.7976684570312 MULTI HCD FTMS 0 0 0 23587 72203.515625 0.184685834349413 -5 0.1110382080078125 3 Unmodified _LYNWEVAIF_ ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF 49.93300154707207 0.03166451819912738 1 [Y{I|L}]N[WE]VA{I|L}{M(Oxidation (M))|F} 9 0 + 55.894 0 0 4.8453 4.8453 81.407 0 0 0 0.6694678963061307 13.242946587693964 0.6694678963061307 0.6694678963061307 0 1.7302046884880937 0 0 0.75 + + [Y{I|L}]N[WE]VA{I|L}{M(Oxidation (M))|F};[YN]{I|L}[WE]VA{I|L}{M(Oxidation (M))|F};[Y{I|L}]GG[WE]VA{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}[H{I|L}]A{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QP]{M(Oxidation (M))|F};[Y{I|L}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}[Q{I|L}];[YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}[Q{I|L}];[Y{M(Oxidation (M))|F}][{I|L}P]N{I|L}{M(Oxidation (M))|F}[Q{I|L}];[Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}{M(Oxidation (M))|F}[Q{I|L}] 4.8453;4.7873;3.3969;2.0489;1.7643;0.65627;0.59824;0.57226;0.50362 +;-;-;-;-;-;-;-;- + 343 NaN NaN 139673.4 NaN 19326 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23591 93.573 NaN 354520 35 0 58616 0.261 + -1 YLLCGKLIM 9 66 555.8061728700939 1109.5977928069876 2 556.794677734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YLLC(Carbamidomethyl (C))GKLIM_ REV__ENSG00000203730|ENST00000367565|TEDDM1 18.13498045792455 0.20367413111508956 1 [Y{I|L}]VAYYEP 8 -1 37.885 0 0 3.4143 0 0 0 108.10303127743535 108.10303127743535 20.51660967055859 0 0 0 0 0.3494850021680094 1.3979400086720375 0.8807196863200843 0 [Y{I|L}]VAYYEP 3.4143 - 714 NaN NaN 142514.9 NaN 19327 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23592 93.576 NaN 54871 35 0 4655.7 0.261 -1 LMAKLSSMKIK 11 37 633.3691435624123 1264.7237341916245 2 633.8709106445312 MULTI HCD FTMS 0 0 0 23587 36434.0546875 0.9013711259506944 9 -0.25588226318359375 5 Oxidation (M) _LM(Oxidation (M))AKLSSMKIK_ nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1 1.1933415558491238 0.4136870758253112 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.43366 0 0 659.3671190566621 455.25055872135005 1114.6176777780122 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.43366 + + 6 + NaN NaN 96140 NaN 19328 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23593 93.579 NaN 45805 35 0 6639.1 0.264 + 14989 LLLCAHCH 8 34 455.2253708018938 NaN 0 455.22491455078125 PEAK HCD FTMS 0 0 0 23587 21446.1953125 0.4289635518657701 41 -0.8536834716796875 6 Unmodified _LLLCAHCH_ ENST00000495786.1_1_19:55084740-55084827:+|nuORF 0.7936320650641473 0.38822285293237185 1 D 1 8 1.5938 0 0 0.17544 0 0 642.3237446782033 148.06768213443596 790.3914268126392 0 0 0 0 0 0 0 0 0 D 0.17544 - 3 + NaN NaN 106807.2 NaN 19329 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23594 93.583 NaN 76221 35 0 11346 0.261 + 14156 LAFLLIKLFR 10 34 617.4104567272564 NaN 0 617.7684936523438 PEAK HCD FTMS 0 0 0 23587 11623.5166015625 0.6081494558605672 2 -0.05240631103515625 7 Unmodified _LAFLLIKLFR_ REV__ENST00000272793.9_1_2:170930100-170936486:+|nuORF 0.4007161486938917 0.3398413315442166 1 {M(Oxidation (M))|F}Y 2 -1 7.4743 0 0 0.60628 0 0 426.4777063910199 493.1772554986938 919.6549618897137 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 0.60628 - 9 + NaN NaN 99779.8 NaN 19330 4262 23587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23596 93.587 NaN 1490100 35 0 184030 0.327 -1 0 98 516.3142569266997 1030.6139609201994 2 516.3143920898438 MULTI HCD FTMS 0 0 0 23595 934321.875 1 0 0 1 NaN NaN 1 {I|L}{I|L}{[MG]|[TS]}EE{I|L}{I|L} 8 -1 13.558 0 0 1.3156 0 0 0 129.0930826671354 129.0930826671354 5.459340664144337 0 0 0 0 0.3252574989159953 0.744727494896694 0.9035984316004221 0 {I|L}{I|L}{[MG]|[TS]}EE{I|L}{I|L} 1.3156 - 451 NaN NaN 308236.6 NaN 19331 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23597 93.592 NaN 1541000 35 0 227390 0.261 + 15644 LPEFVEPFL 9 59 545.7946411627574 1089.5747293923148 2 545.7947998046875 MULTI HCD FTMS 0 0 0 23595 693701.5 0.6586214291470208 -2 0.04907989501953125 2 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 46.020951573049366 0.037705236580089195 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 86.877 0 0 7.9734 7.9734 96.23 0 0 0 24.13734275855269 65.90751964955196 24.13734275855269 51.423588829406974 0 1.774227503252014 1.6989700043360187 0.7742275032520141 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}VEP{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V][EP]{I|L}EP{M(Oxidation (M))|F}{I|L} 7.9734;3.2538 -;- 379 NaN NaN 311674.9 NaN 19332 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23598 93.595 NaN 303680 35 0 27215 0.261 + 16549 LTSLRKLWLMH 11 75 466.6074882506626 1396.8006353521878 3 466.6080017089844 MULTI HCD FTMS 0 0 0 23595 146724.84375 0.5131826726558445 -15 0.3599853515625 3 Unmodified _LTSLRKLWLMH_ ENSG00000131409|ENST00000652263|LRRC4B 1.214830529360525 0.41359283248740725 1 PE 2 11 5.5732 0 0 0.399 0 0 585.3889665062878 582.2930391900999 1167.6820056963877 0 0 0 0 0 0 0 0 0 PE 0.399 - 15 + NaN NaN 125214 NaN 19333 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23599 93.599 NaN 318560 35 0 25794 0.261 + 28013 TFSYGPDGNGF 11 67 581.2455551312466 1160.4765573292932 2 581.7593994140625 MULTI HCD FTMS 0 0 0 23595 6452.88671875 0.11557485325754366 4 -0.1148223876953125 4 Unmodified _TFSYGPDGNGF_ ENSG00000180776|ENST00000400590|ZDHHC20;ENST00000477811.5_1_13:21956068-21964388:-|nuORF;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20 16.149105407346934 0.31637472687818013 1 VWG{M(Oxidation (M))|F} 4 9 42.027 0 0 3.6215 0 0 653.2291423129652 0 653.2291423129652 0 35.03714405160309 0 0 0 1.610924374808178 0 0 0 VWG{M(Oxidation (M))|F} 3.6215 - 109 + NaN NaN 138446.2 NaN 19334 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23600 93.602 NaN 368390 35 0 54603 0.261 + 15812 LPHYEPIPF 9 61 556.7927943715707 1111.5710358099413 2 556.79248046875 MULTI HCD FTMS 0 0 0 23595 40830.96484375 0.4445145984737182 5 -0.13442230224609375 5 Unmodified _LPHYEPIPF_ ENSG00000109180|ENST00000264312|OCIAD1;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1 30.224811164608877 0.11021837014094292 1 {I|L}PE{M(Oxidation (M))|F}SY{M(Oxidation (M))|F} 7 5 72.204 0 0 6.4956 0 0 0 225.12423120670158 225.12423120670158 43.99411293427114 0 0 0 0 1.2302046884880937 1.3979400086720375 0.9247425010840047 0 {I|L}PE{M(Oxidation (M))|F}SY{M(Oxidation (M))|F} 6.4956 - 546 + NaN NaN 138362.9 NaN 19335 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23601 93.605 NaN 41431 35 0 6103.7 0.261 + -1 KIMILQPIFF 10 36 633.3691435624123 1264.7237341916245 2 633.8707885742188 MULTI HCD FTMS 0 0 0 23595 21349.021484375 0.5281704630014399 10 -0.281951904296875 6 Oxidation (M) _KIM(Oxidation (M))ILQPIFF_ REV__DNAH3|p.E992Qfs*16|1|0.32|ENSG00000158486|chr16:21075545-21075557|CACCAATGGGCTC/-|frameshift_variant;REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57-2|DNAH3;REV__nc|ENSG00000158486|Q8TD57-3|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 1.6526216038709556 0.46655611578153744 1 M 1 -1 2.2185 0 0 0.17541 0 0 763.4681322402558 367.19785486392817 1130.665987104184 0 0 0 0 0 0 0 0 0 M 0.17541 + + 1 + NaN NaN 83017.8 NaN 19336 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23602 93.609 NaN 39661 35 0 4439.7 0.261 + 21412 PVQDRGIFSMV 11 31 624.8241276643616 NaN 0 624.7427368164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PVQDRGIFSMV_ REV__RIOK3|p.H364R|1|0.15|ENSG00000101782|chr18:23475025-23475025|A/G|missense_variant 2.282774691075616 0.33564456907475565 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.56024 0 0 336.1891966355607 761.3501680963499 1097.5393647319106 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.56024 + + 6 + NaN NaN 100371 NaN 19337 4263 23595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23604 93.614 NaN 605100 35 0 46436 0.327 -1 0 84 524.8272591066905 1047.6399652801808 2 524.8273315429688 MULTI HCD FTMS 0 0 0 23603 366404.46875 0.5785486918321356 1 -0.03284454345703125 1 NaN NaN 1 A 1 -1 10.841 0 0 1.0348 0 0 281.181973770924 692.4070841155988 973.5890578865228 0 0 0 0 0 0.7742275032520141 0 0 0 A 1.0348 - 23 + NaN NaN 171212.8 NaN 19338 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23605 93.618 NaN 2143900 35 0 183220 0.261 + 19093 NFDITYVRGL 10 106 599.3148199192689 NaN 0 599.3011474609375 PEAK HCD FTMS 0 0 0 23603 46356.453125 1 0 0 2 Unmodified _NFDITYVRGL_ REV__ENSG00000153827|ENST00000675903|TRIP12;REV__nc|ENSG00000153827|Q14669-2|TRIP12;REV__nc|ENSG00000153827|Q14669-4|TRIP12;REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant 18.1463463914782 0.29565035219289926 1 CNN{I|L}DW{I|L} 7 -1 51.393 0 0 4.2949 0 0 62.075548138549784 273.1248988234797 335.2004469620295 0 0 0 0 0 0 0 0.9876954943324545 0.7059771852360797 CNN{I|L}DW{I|L} 4.2949 - 2180 + NaN NaN 418949.4 NaN 19339 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23606 93.622 NaN 218830 35 0 12196 0.264 -1 0 62 437.2570625673022 1308.7493583021067 3 437.25726318359375 MULTI HCD FTMS 0 0 0 23603 152085.359375 0.36136102440624596 36 -0.7161407470703125 3 NaN NaN 1 Q 1 -1 5.4846 0 0 0.41907 0 0 634.3739443390192 543.3018282525999 1177.675772591619 0 0 0 0 0 0 0 0 0 Q 0.41907 - 63 + NaN NaN 125994.3 NaN 19340 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23607 93.625 NaN 303160 35 0 25887 0.261 + 27021 SYLQYLEYL 9 70 596.3002766236732 1190.5860003141463 2 596.7838134765625 MULTI HCD FTMS 0 0 0 23603 13459.3271484375 0.008421946962976856 28 -0.5664215087890625 4 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 29.84058131909904 0.11198220037953927 1 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 8 7 41.609 0 0 3.4948 0 0 0 161.05604172612553 161.05604172612553 2.461987796517704 0 0 0 0 0 1.3979400086720375 0.3807196863200844 0 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 3.4948 - 488 NaN NaN 140460.1 NaN 19341 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23608 93.628 NaN 683010 35 0 88595 0.261 -1 FESYYFPMS 9 84 593.7421304297962 1185.4697079263924 2 593.741943359375 MULTI HCD FTMS 0 0 0 23603 68270.1171875 0.5079637168732142 7 -0.2034759521484375 5 Oxidation (M) _FESYYFPM(Oxidation (M))S_ CON__Q2TBQ1 7.289230182591677 0.29575926068275815 1 PEE 3 -1 26.555 0 0 2.24 0 0 812.3033901457655 0 812.3033901457655 0 0.8137031738250009 0 0 0 0.2614393726401688 0 0.4247425010840047 0 PEE 2.24 - 859 NaN NaN 183874.8 NaN 19342 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23609 93.632 NaN 248100 35 0 36185 0.261 -1 YFDLLGELM 9 46 558.767432013302 1115.520311093404 2 558.7677612304688 MULTI HCD FTMS 0 0 0 23603 49759.203125 0.39909620926218203 -5 0.11767578125 6 Oxidation (M) _YFDLLGELM(Oxidation (M))_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 30.636539890814138 0.10832830463492794 1 {I|L}GE{I|L}{M(Oxidation (M))|F} 5 -1 51.186 0 0 4.5885 0 0 538.2413655517543 0 538.2413655517543 0 33.22682509756042 0 0 0 1.9247425010840047 0 0 0 {I|L}GE{I|L}{M(Oxidation (M))|F} 4.5885 + + 173 + NaN NaN 118072.8 NaN 19343 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23610 93.635 NaN 370070 35 0 34454 0.261 -1 GVCSTVTLNFN 11 75 606.2904130885427 1210.5662732438852 2 606.2888793945312 MULTI HCD FTMS 0 0 0 23603 71385.6171875 0.13678120089086165 -5 0.11767578125 7 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 24.990960013464015 0.23933535780272686 1 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 7 -1 72.656 0 0 6.0018 0 0 290.12666518379064 0 290.12666518379064 0 57.23274804785078 0 0 0 2.610924374808178 0 0.3054621874040891 0.3807196863200844 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 6.0018 - 1177 NaN NaN 136212.8 NaN 19344 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23611 93.638 NaN 110410 35 0 14243 0.261 + 33638 YIWNTGYLF 9 48 588.7897547639334 1175.5649565946667 2 588.7894897460938 MULTI HCD FTMS 0 0 0 23603 22009.255859375 0.3608508925990775 -5 0.11767578125 8 Unmodified _YIWNTGYLF_ ENSG00000174990|ENST00000649794|CA5A 13.042465956692817 0.2476723265019929 1 [Y{I|L}]NWEV 6 6 50.891 0 0 4.329 0 0 0 368.15867029361567 368.15867029361567 30.088643834802156 0 0 0 0 0.8494850021680094 2 0 0 [Y{I|L}]NWEV 4.329 - 122 + NaN NaN 100114.7 NaN 19345 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23612 93.642 NaN 101650 35 0 10360 0.261 + 20079 NYIPRFWTF 9 46 622.3168226977734 1242.6190924623468 2 622.31591796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4058410797874 849.4058410797874 29.10728139283883 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 59 NaN NaN 99939.3 NaN 19346 4264 23603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23614 93.646 NaN 292000 35 0 44836 0.327 + 5958 FPDPVVQWL 9 65 550.7923660822415 1099.570179231283 2 551.284423828125 MULTI HCD FTMS 0 0 0 23613 15034.4677734375 0.17567722357573062 9 -0.2447662353515625 1 Unmodified _FPDPVVQWL_ ENSG00000144120|ENST00000272521|TMEM177 27.628801355627647 0.12213550946336599 1 [YT][YK]VQW{I|L} 8 5 + 49.602 0 0 4.511 4.511 86.204 0 0 0 14.436974992327123 17.25772496747986 14.436974992327123 9.262137858390815 0 0.9247425010840047 1.3979400086720375 0 0 [YT][YK]VQW{I|L};[YT][YK]V[AG]W{I|L};[Y{I|L}][KQ]{[{M(Oxidation (M))|F}C]|[YS]}W{I|L};[{M(Oxidation (M))|F}E][YK][KS]W{I|L} 4.511;3.6687;2.1068;0.038508 -;-;-;- 548 NaN NaN 124824.7 NaN 19347 4265 23613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23615 93.651 NaN 288820 35 0 45864 0.261 + 6617 FPLSELVEF 9 58 540.7842954187153 1079.5540379042304 2 540.7847290039062 MULTI HCD FTMS 0 0 0 23613 106368.7734375 0.49519527715500933 5 -0.13787841796875 2 Unmodified _FPLSELVEF_ ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-2|NOP2;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-4|NOP2 36.12702656103203 0.08312389501731911 1 [{M(Oxidation (M))|F}E][TP]V{I|L}VE{M(Oxidation (M))|F} 9 4 [{M(Oxidation (M))|F}E][TP]V + + 48.95 -5.027 -0.87688 4.5343 4.5343 60.827 0 0 0 0 27.980734984209512 0 0 0 1.9247425010840047 0 0.5 0 [{M(Oxidation (M))|F}E][TP]V{I|L}VE{M(Oxidation (M))|F} 4.5343 - 217 + NaN NaN 125987.9 NaN 19348 4265 23613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23616 93.654 NaN 483300 35 0 76216 0.463 -1 DFHCTCSANF 10 68 601.224046163886 1200.4335393945719 2 601.2242431640625 MULTI HCD FTMS 0 0 0 23613 110677.84375 0.5599920942835741 9 -0.2447662353515625 3 Carbamidomethyl (C) _DFHC(Carbamidomethyl (C))TCSANF_ CRB2|p.P834S|1|0.29|ENSG00000148204|chr9:123372240-123372240|C/T|missense_variant 1.3295316138638542 0.46826628246186464 1 NN{I|L}W{I|L}NN{M(Oxidation (M))|F} 8 -1 34.537 0 0 2.877 0 0 166.91261460088236 0 166.91261460088236 0 21.34917716424694 0 0 0 0.13821049216444517 0 0 0.555462187404089 NN{I|L}W{I|L}NN{M(Oxidation (M))|F} 2.877 - 666 + NaN NaN 173181.5 NaN 19349 4265 23613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23617 93.661 NaN 851960 35 0 149230 0.261 + 17574 LYVNQDSHPF 10 88 610.2914173168997 1218.5682817005993 2 610.2924194335938 MULTI HCD FTMS 0 0 0 23613 247160.5 0.25982911823220683 -4 0.10809326171875 4 Unmodified _LYVNQDSHPF_ ENST00000309890.11_1_17:3827212-3827491:-|nuORF 29.081581746732265 0.240155558137004 1 {I|L}Y{I|L}WD{I|L}N 7 7 89.743 0 0 7.3646 0 0 0 298.08042322330317 298.08042322330317 55.497585348893494 0 0 0 0 2.0994850021680094 1.6989700043360187 0.3252574989159953 0.7059771852360797 {I|L}Y{I|L}WD{I|L}N 7.3646 - 1866 + NaN NaN 224598.2 NaN 19350 4265 23613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23618 93.664 NaN 286520 35 0 21370 0.261 + 5091 FEFEPFLQ 8 72 528.7555912140499 1055.4966294948997 2 528.7549438476562 MULTI HCD FTMS 0 0 0 23613 43037.82421875 0.018292341923319803 22 -0.4295806884765625 5 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 32.30548876998284 0.3297748069446609 1 MK{M(Oxidation (M))|F} 3 -1 30.247 0 0 2.8657 0 0 0 646.2521436623465 646.2521436623465 9.278259348524358 0 0 0 0 0.7059771852360797 0 0 0 MK{M(Oxidation (M))|F} 2.8657 - 351 + NaN NaN 132424.7 NaN 19351 4265 23613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23619 93.668 NaN 456200 35 0 107420 0.261 + 16056 LPSLEFISL 9 51 509.79465467623976 1017.5747564192795 2 509.7950439453125 MULTI HCD FTMS 0 0 0 23613 97056.015625 0.1788291573417095 -4 0.10809326171875 6 Unmodified _LPSLEFISL_ ENSG00000145868|ENST00000340253|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;nc|ENSG00000145868|Q6PIJ6-3|FBXO38 49.93300154707207 0.03166451819912738 1 {[TV]|[{I|L}S]}[{I|L}P]E{M(Oxidation (M))|F}{I|L}S{I|L} 9 2 + 76.577 0 0 7.5254 7.5254 95.041 0 0 0 13.133637307377057 62.59758745913771 13.133637307377057 37.17925002484726 0 2 1.5228787452803376 0.8494850021680094 0 {[TV]|[{I|L}S]}[{I|L}P]E{M(Oxidation (M))|F}{I|L}S{I|L};[HV][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{I|L}S{I|L} 7.5254;3.8717 -;- 70 NaN NaN 154287 NaN 19352 4265 23613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23621 93.673 NaN 2827900 35 0 796940 0.327 + 6105 FPEGLFYEF 9 63 574.7685864343971 1147.522619935594 2 574.7689819335938 MULTI HCD FTMS 0 0 0 23620 2021659.875 0.6241835639977223 10 -0.25046539306640625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 96.28474662873226 0.004361282420133734 1 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 89.416 0 0 7.7921 7.7921 95.18 0 0 0 18.89506772603255 60.20766971142507 18.89506772603255 32.245462655597095 0 2.4247425010840047 0 1.5994850021680094 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.7921;4.9821 -;- 176 NaN NaN 482755.6 NaN 19353 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23622 93.677 NaN 835190 35 0 236570 0.261 + 6743 FPQIGELIL 9 45 515.3026291160239 1028.5907052988478 2 515.3029174804688 MULTI HCD FTMS 0 0 0 23620 369984.90625 0.31450817945888787 5 -0.14437103271484375 2 Unmodified _FPQIGELIL_ ENSG00000163510|ENST00000410053|CWC22 51.629811660486645 0.02929079705179888 1 {I|L}GE{I|L}{I|L}{I|L} 6 3 66.191 0 0 6.4351 0 0 372.1798573224625 0 372.1798573224625 0 66.19070971708595 0 0 0 2.3494850021680094 0 0.3054621874040891 0 + {I|L}GE{I|L}{I|L}{I|L} 6.4351 + + 49 NaN NaN 206856.5 NaN 19354 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23623 93.681 NaN 1658800 35 0 242800 0.261 + 1009 AYFPELIANF 10 91 592.8033437823678 1183.5921346315356 2 592.803466796875 MULTI HCD FTMS 0 0 0 23620 571385.6875 0.20202833806580245 -3 0.08527374267578125 3 Unmodified _AYFPELIANF_ ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46 171.0860797660465 3.2609084588946327E-11 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F} 10 0 + 101.95 0 0 8.6139 8.6139 94.145 0 0 0 13.272249116696372 86.23060358348758 13.272249116696372 12.659389507179355 0 3.1237125054200234 1.5228787452803376 0.28872548999643577 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PA[RK]AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}EP{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K[RP]AAN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PA[RK]AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}[KT]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K[RP]AAGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QAN{M(Oxidation (M))|F} 8.6139;7.5443;6.2484;6.1411;5.8108;5.7611;5.4741;5.0938;4.9868;4.7504 +;-;-;-;-;-;-;-;-;- + 3820 NaN NaN 347923.3 NaN 19355 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23624 93.684 NaN 304140 35 0 17577 0.263 + 11973 KFQVMYRRIL 10 74 451.93248683120106 1352.7756310938032 3 451.9326477050781 MULTI HCD FTMS 0 0 0 23620 158940.703125 0.22134904169024744 -22 0.5600128173828125 4 Unmodified _KFQVMYRRIL_ ENSG00000135966|ENST00000393359|TGFBRAP1 1.5922808571145555 0.4668755089467872 1 N{[HG]|PP}{[SA]|[TG]} 5 10 10.458 0 0 0.77305 0 0 868.4897328107437 0 868.4897328107437 0 3.111206103324733 0 0 0 1 0 0 0 N{[HG]|PP}{[SA]|[TG]} 0.77305 - 26 NaN NaN 131259.8 NaN 19356 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23625 93.687 NaN 176870 35 0 28099 0.261 -1 0 68 533.340480238976 1064.666407544752 2 533.3407592773438 MULTI HCD FTMS 0 0 0 23620 88463.234375 0.5182095375721221 -1 0.0262603759765625 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.37377 0 0 549.4909447535396 365.0913485162719 914.5822932698115 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.37377 - 8 + NaN NaN 118488.2 NaN 19357 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23626 93.691 NaN 512010 35 0 87441 0.261 -1 LPESPCLSPL 10 76 556.7846051792769 1111.5546574253538 2 556.7848510742188 MULTI HCD FTMS 0 0 0 23620 90125.375 0.605319104055894 -1 0.0262603759765625 6 Carbamidomethyl (C) _LPESPC(Carbamidomethyl (C))LSPL_ ENSG00000141200|ENST00000268919|KIF2B 29.081581746732265 0.240155558137004 1 {I|L}PE{M(Oxidation (M))|F}VE 6 -1 84.474 0 0 7.5996 0 0 0 394.1744601073452 394.1744601073452 46.15356566548286 0 0 0 0 1.8851518780601921 1.5228787452803376 0.9247425010840047 0 {I|L}PE{M(Oxidation (M))|F}VE 7.5996 - 602 + NaN NaN 165853.1 NaN 19358 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23627 93.694 NaN 145970 35 0 28922 0.261 + 30588 VPAAILGLVL 10 25 483.3233013847505 964.632049836301 2 483.3233947753906 MULTI HCD FTMS 0 0 0 23620 54427.49609375 0.16361212581172918 -3 0.08527374267578125 7 Unmodified _VPAAILGLVL_ tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1 7.910154910731844 0.4334339971971892 1 V{I|L} 2 8 25.969 0 0 2.6921 0 0 734.4686272243309 0 734.4686272243309 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 6 NaN NaN 101972.9 NaN 19359 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23628 93.697 NaN 970380 35 0 194900 0.261 + 3535 EINPLLELI 9 78 527.3132151831177 1052.6118774330353 2 527.3150634765625 MULTI HCD FTMS 0 0 0 23620 138162.109375 0.09266670643417958 -3 0.08527374267578125 8 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 63.960520009940105 0.0120409805053046 1 {[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}E{I|L}{I|L} 9 -1 + 74.809 0 0 7.107 7.107 85.729 0 0 0 17.245754949658888 48.80993969293064 17.245754949658888 1.3206844429176101 0 1.5 0.7958800173440752 0.9436726795685342 0.6549471895720984 {[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[NP]{I|L}{I|L}E{I|L}{I|L} 7.107;6.9815 -;+ + 249 NaN NaN 246066.2 NaN 19360 4266 23620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23630 93.702 NaN 513150 35 0 79741 0.327 -1 0 70 585.7595504324721 1169.5045479317441 2 585.7598876953125 MULTI HCD FTMS 0 0 0 23629 431149.625 0.9005837402352037 11 -0.2462005615234375 1 NaN NaN 1 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 69.941 0 0 5.9804 0 0 316.1036854474625 0 316.1036854474625 0 34.19547293177743 0 0 0 1.774227503252014 0 0.7742275032520141 0 Y{M(Oxidation (M))|F}{I|L}GEPE 5.9804 - 528 NaN NaN 176791.4 NaN 19361 4267 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23631 93.707 NaN 496250 35 0 85986 0.261 -1 DNMLEPSANMP 11 82 625.756309690662 1249.4980664481238 2 625.7562255859375 MULTI HCD FTMS 0 0 0 23629 248369.609375 0.9654785928293559 -2 0.05580902099609375 2 2 Oxidation (M) _DNM(Oxidation (M))LEPSANM(Oxidation (M))P_ ENSG00000156508|ENST00000309268|EEF1A1;ENST00000417549.1_1_13:28788954-28789521:+|nuORF;ENST00000443590.1_1_2:107314489-107314633:-|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 16.149105407346934 0.31637472687818013 1 [Y{I|L}]{I|L}W 4 -1 32.167 0 0 2.5744 0 0 0 671.1635076925176 671.1635076925176 6.237125054200234 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{I|L}W 2.5744 - 143 NaN NaN 160895 NaN 19362 4267 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23632 93.71 NaN 240320 35 0 25143 0.262 -1 IYSLMPLLL 9 62 539.81440647788 1077.6142600225598 2 539.8143920898438 MULTI HCD FTMS 0 0 0 23629 74696.4765625 0.413559317781796 11 -0.2462005615234375 3 Oxidation (M) _IYSLM(Oxidation (M))PLLL_ ENSG00000151893|ENST00000369151|CACUL1;ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-2|CACUL1;nc|ENSG00000151893|Q86Y37-4|CACUL1 23.1484247019978 0.1603590852062899 1 {I|L}{I|L} 2 -1 22.959 0 0 2.1305 0 0 833.4332044218243 0 833.4332044218243 0 11.12395659563255 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.1305 + + 70 NaN NaN 123927.5 NaN 19363 4267 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23633 93.714 NaN 190510 35 0 24032 0.261 + -1 ERFRTCNNF 9 60 622.285553799086 1242.5565546649718 2 622.2845458984375 MULTI HCD FTMS 0 0 0 23629 56799.33984375 0.5070320975049455 -1 0.02954864501953125 4 Carbamidomethyl (C) _ERFRTC(Carbamidomethyl (C))NNF_ REV__ENSG00000155592|ENST00000328086|ZKSCAN2;REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF 17.11289562659939 0.2125047172822487 1 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F} 9 -1 + 57.145 0 0 4.599 4.599 84.26 0 0 0 16.93574972449312 32.70812200728862 16.93574972449312 8.010299956639813 0 1.4247425010840047 1.3010299956639813 0 0.3054621874040891 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]ARN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}GGN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NGG{M(Oxidation (M))|F};[YN][KT]DD{I|L}NN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]A[VG]N{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]ARGG{M(Oxidation (M))|F};[Y{I|L}]N[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F};[YN][KT]DDARN{M(Oxidation (M))|F};[YN][KT][WD]RN{M(Oxidation (M))|F} 4.599;3.9543;3.8579;3.8579;3.5161;3.2133;3.2133;3.1141;2.8714;2.7481 -;-;-;-;-;-;-;-;-;- 580 NaN NaN 128704.2 NaN 19364 4267 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23634 93.717 NaN 150480 35 0 27137 0.261 -1 MPTTIEREF 9 48 583.2820546354186 1164.5495563376371 2 583.2822875976562 MULTI HCD FTMS 0 0 0 23629 50407.51171875 0.3239905426454682 21 -0.39318084716796875 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MPTTIEREF_ ENSG00000175354|ENST00000309660|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2;PTPN2|p.Q246Tfs*39|1|0.3|ENSG00000175354|chr18:12814325-12814326|-/T|frameshift_variant 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 -1 34.725 0 0 2.9818 0 0 560.2952971597059 0 560.2952971597059 0 18.526909627198403 0 0 0 0.3807196863200844 0 0.5 0 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 2.9818 - 83 + NaN NaN 119296 NaN 19365 4267 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23636 93.722 NaN 606640 35 0 105460 0.326 + 15645 LPEFVEPFL 9 37 545.7946411627574 1089.5747293923148 2 545.794921875 MULTI HCD FTMS 0 0 0 23635 595811.6875 0.5656818460443696 3 -0.09522247314453125 1 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 39.957323273324995 0.06554068735427583 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 76.092 0 0 6.9837 6.9837 95.161 0 0 0 17.649087242336776 76.09243748081781 17.649087242336776 76.09243748081781 0 1.4247425010840047 1.5228787452803376 0.7742275032520141 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 6.9837 - 41 NaN NaN 171817.7 NaN 19366 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23637 93.726 NaN 820160 35 0 181420 0.261 + 3536 EINPLLELI 9 52 527.3132151831177 1052.6118774330353 2 527.3135375976562 MULTI HCD FTMS 0 0 0 23635 512044.46875 0.3434333384279346 -1 0.01959991455078125 2 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 47.594388314883695 0.03493607795751234 1 {[QN]|[E{I|L}]|[KN]}{I|L}PN{I|L}E{I|L}{I|L} 9 -1 + 83.07 0 0 7.8918 7.8918 91.25 0 0 0 20.87128018967597 71.08017516893504 20.87128018967597 9.208187539523749 0 1.5 1.5228787452803376 0 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}{I|L}PN{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}PGG{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[NP]{I|L}{I|L}E{I|L}{I|L} 7.8918;7.017;6.9186 -;-;+ + 114 NaN NaN 199689.6 NaN 19367 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23638 93.73 NaN 869040 35 0 76882 0.261 + 8278 GVCSTVTLNFN 11 104 606.2904130885427 1210.5662732438852 2 606.2899169921875 MULTI HCD FTMS 0 0 0 23635 408188.9375 0.7821263618827611 -1 0.01959991455078125 3 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 53.832793166522166 0.0656792923142766 1 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 7 9 84.417 0 0 6.9734 0 0 290.12620742011876 0 290.12620742011876 0 55.10290438648937 0 0 0 2.6549471895720984 0 0.9559771852360797 0.6861818737241735 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 6.9734 - 7470 NaN NaN 213774.5 NaN 19368 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23639 93.733 NaN 154950 35 0 28517 0.261 + 17232 LYNWEVAIF 9 43 577.7979246033001 1153.5812962734 2 577.7978515625 MULTI HCD FTMS 0 0 0 23635 252658.59375 0.64626303564797 1 -0.03621673583984375 4 Unmodified _LYNWEVAIF_ ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF 41.8396318013385 0.056899836730939755 1 VA{I|L}{M(Oxidation (M))|F} 4 5 45.547 0 0 3.9484 0 0 705.3118763654312 0 705.3118763654312 0 36.595019080956064 0 0 0 1.5114393726401687 0 0 0 + VA{I|L}{M(Oxidation (M))|F} 3.9484 + + 41 NaN NaN 100260.3 NaN 19369 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23640 93.736 NaN 645630 35 0 103650 0.264 + 10946 IYDFDRFME 9 72 412.5182142398387 1234.532813319716 3 412.5184020996094 MULTI HCD FTMS 0 0 0 23635 104784.9921875 0.37736215716049226 1 -0.03621673583984375 5 Unmodified _IYDFDRFME_ REV__ENSG00000065243|ENST00000370521|PKN2;REV__nc|ENSG00000065243|Q16513-2|PKN2;REV__nc|ENSG00000065243|Q16513-3|PKN2;REV__nc|ENSG00000065243|Q16513-4|PKN2;REV__nc|ENSG00000065243|Q16513-5|PKN2 18.373094154950223 0.20161688160436167 1 {I|L}Y[YQ]{I|L} 5 -1 46.114 0 0 3.7354 0 0 0 551.1366060846311 551.1366060846311 21.064921830680703 0 0 0 0 0.3494850021680094 2 0 0.7302046884880937 {I|L}Y[YQ]{I|L} 3.7354 - 51 + NaN NaN 186666.5 NaN 19370 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23641 93.74 NaN 465610 35 0 82628 0.261 + 4871 FAFDEIVAL 9 44 512.7710785130541 1023.5276040929083 2 512.7713012695312 MULTI HCD FTMS 0 0 0 23635 161105.078125 0.2888555702678195 -1 0.01959991455078125 6 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 64.23631603340823 0.01165516075559909 1 E{I|L}VA{I|L} 5 4 66.37 0 0 6.4844 0 0 480.2031422345719 0 480.2031422345719 0 58.92281585743653 0 0 0 1.8807196863200843 0 1.110924374808178 0 + E{I|L}VA{I|L} 6.4844 + + 79 NaN NaN 148195.3 NaN 19371 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23642 93.743 NaN 60440 35 0 9518.9 0.261 -1 EYYKQFCVP 9 36 617.2823448413784 1232.5501367495567 2 618.2741088867188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _EYYKQFC(Carbamidomethyl (C))VP_ ENSG00000129353|ENST00000335757|SLC44A2;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;nc|ENSG00000129353|Q8IWA5-3|SLC44A2 0.6014990680409731 0.3464572424761564 1 E 1 -1 6.9897 0 0 0.56709 0 0 145.0876614020654 955.3865450494749 1100.4742064515403 0 0 0 0 0 0 0 0 0 E 0.56709 + + 2 + NaN NaN 89877.5 NaN 19372 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23643 93.746 NaN 179500 35 0 13717 0.264 -1 0 62 457.6082332782322 1369.8028704348967 3 457.608154296875 MULTI HCD FTMS 0 0 0 23635 56733.2265625 0.1966915763813651 -5 0.13442230224609375 8 NaN NaN 1 [YE]{M(Oxidation (M))|F} 3 -1 18.072 0 0 1.3193 0 0 0 927.6087230562435 927.6087230562435 14.97302484056647 0 0 0 0 0 1 0 0 [YE]{M(Oxidation (M))|F} 1.3193 - 19 NaN NaN 113707.5 NaN 19373 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23644 93.75 NaN 151410 35 0 13510 0.261 + 25702 SIVAFLAAF 9 41 469.77014724296066 937.5257415527213 2 469.7710266113281 MULTI HCD FTMS 0 0 0 23635 78495.5546875 0.6718492977011931 -1 0.01959991455078125 9 Unmodified _SIVAFLAAF_ REV__ENSG00000103222|ENST00000399410|ABCC1;REV__nc|ENSG00000103222|P33527-2|ABCC1;REV__nc|ENSG00000103222|P33527-3|ABCC1;REV__nc|ENSG00000103222|P33527-4|ABCC1;REV__nc|ENSG00000103222|P33527-5|ABCC1;REV__nc|ENSG00000103222|P33527-6|ABCC1;REV__nc|ENSG00000103222|P33527-7|ABCC1;REV__nc|ENSG00000103222|P33527-8|ABCC1;REV__nc|ENSG00000103222|P33527-9|ABCC1 44.40701690623563 0.04511410083598184 1 AA{I|L}P{I|L}AA{M(Oxidation (M))|F} 8 -1 52.115 0 0 5.5588 0 0 165.07783367119094 0 165.07783367119094 0 46.630937864725155 0 0 0 0 0 0 0 AA{I|L}P{I|L}AA{M(Oxidation (M))|F} 5.5588 - 44 + NaN NaN 103794.4 NaN 19374 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23645 93.753 NaN 195990 35 0 20243 0.261 + 7367 FVELYLLSF 9 59 565.8101982037683 1129.6058434743366 2 565.8104248046875 MULTI HCD FTMS 0 0 0 23635 40964.6796875 0.2658832877473635 7 -0.18537139892578125 10 Unmodified _FVELYLLSF_ ENST00000399766.7_1_1:25825018-25825117:+|nuORF 4.75600775471527 0.31496297302216103 1 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.3708 0 0 964.5267246772647 0 964.5267246772647 0 6.187718690714375 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3708 + + 48 + NaN NaN 106922.5 NaN 19375 4268 23635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23647 93.758 NaN 521250 35 0 39113 0.327 + 9877 IAGAQGLRVF 10 96 516.3047452497456 NaN 0 516.3143920898438 PEAK HCD FTMS 0 0 0 23646 27256.248046875 1 0 0 1 Unmodified _IAGAQGLRVF_ ENST00000597648.5_1_19:17970943-17971054:+|nuORF 10.073929032068715 0.33156240198919784 1 DW{I|L} 3 9 9.1909 0 0 0.8918 0 0 340.2598068063285 273.12409387760005 613.3839006839286 0 0 0 0 0 0 0 0.3494850021680094 0 DW{I|L} 0.8918 - 159 + NaN NaN 169501.3 NaN 19376 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23648 93.763 NaN 237690 35 0 10388 0.261 -1 0 86 524.8272591066905 1047.6399652801808 2 524.8274536132812 MULTI HCD FTMS 0 0 0 23646 159604.1875 0.25201328522021715 6 -0.1491546630859375 2 NaN NaN 1 R 1 -1 9.0938 0 0 0.86803 0 0 396.2351323717808 492.28220544986567 888.5173378216465 0 0 0 0 0 0.4247425010840047 0 0 0.3252574989159953 R 0.86803 - 71 + NaN NaN 118766.7 NaN 19377 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23649 93.766 NaN 122930 35 0 18026 0.261 + 16705 LYACDSKSEF 10 50 581.758308050718 1161.502063168236 2 581.7586059570312 MULTI HCD FTMS 0 0 0 23646 56772.4140625 0.6150600250835936 6 -0.1491546630859375 3 Unmodified _LYACDSKSEF_ ENSG00000260314|ENST00000569591|MRC1;nc|ENSG00000260314|P22897-2|MRC1 13.042465956692817 0.38911719078024076 1 E{M(Oxidation (M))|F} 2 8 23.856 0 0 2.0539 0 0 867.3822148079341 0 867.3822148079341 0 2.1839980794502445 0 0 0 0.28872548999643577 0 0 0 + E{M(Oxidation (M))|F} 2.0539 + + 78 NaN NaN 98719.1 NaN 19378 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23650 93.769 NaN 122790 35 0 12237 0.262 + 30351 VLGGLLWW 8 58 472.2744457077623 NaN 0 472.28363037109375 PEAK HCD FTMS 0 0 0 23646 61834.83203125 0.24091316518562028 -10 0.26214599609375 4 Unmodified _VLGGLLWW_ ENST00000478232.1_1_1:28862693-28863283:+|nuORF 2.8892196856762586 0.38822285293237185 1 N 1 8 5.4846 0 0 0.58189 0 0 375.7086681715809 449.75621044176273 825.4648786133437 0 0 0 0 0 0 0 0 0 N 0.58189 - 1 + NaN NaN 101377.2 NaN 19379 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23651 93.773 NaN 107300 35 0 17668 0.261 -1 LPDLLIFQM 9 35 553.3017869050049 1104.5890208768096 2 553.3023071289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 29.081581746732265 0.1154664336125038 1 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 -1 + 44.9 0 0 4.0648 4.0648 84.835 0 0 0 8.701746761134714 32.4202997895334 8.701746761134714 9.208187539523749 0 1 0 0.3807196863200844 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F} 4.0648;3.2312 -;- 29 NaN NaN 92890.5 NaN 19380 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23652 93.776 NaN 113740 35 0 9935.3 0.261 -1 VCLLHCFGFIS 11 54 648.3202569680345 1294.625961002869 2 648.3185424804688 MULTI HCD FTMS 0 0 0 23646 167372.875 0.4646224062228963 -8 0.21971893310546875 6 Carbamidomethyl (C) _VCLLHC(Carbamidomethyl (C))FGFIS_ ENSG00000116815|ENST00000369489|CD58;nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58 8.745405648335112 0.3805662881914433 1 Y{[DS]|[MA]|[CV]|TT}{I|L}[PS] 6 -1 26.923 0 0 2.0796 0 0 614.3049352611395 0 614.3049352611395 0 12.512262311882765 0 0 0 1 0 0.4247425010840047 0 Y{[DS]|[MA]|[CV]|TT}{I|L}[PS] 2.0796 - 46 NaN NaN 102428.9 NaN 19381 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23653 93.779 NaN 45591 35 0 4349 0.261 + -1 GIQMRLCPMF 10 30 634.8012895769374 1267.5880262206747 2 634.8009643554688 MULTI HCD FTMS 0 0 0 23646 58254.7890625 1 0 0 7 Carbamidomethyl (C),Oxidation (M) _GIQM(Oxidation (M))RLC(Carbamidomethyl (C))PMF_ REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF 3.5964929083625545 0.45626689593999237 1 C 1 -1 5.4846 0 0 0.43268 0 0 62.046787611913324 1099.4791226007328 1161.525910212646 0 0 0 0 0 0 0 0 0 C 0.43268 + + 2 + NaN NaN 88376.5 NaN 19382 4269 23646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23655 93.784 NaN 4992500 35 0 456400 0.327 + 11170 IYIWDLNNF 9 121 599.3004589776755 1196.5863650221509 2 599.3013305664062 MULTI HCD FTMS 0 0 0 23654 254587.25 0.03211033416158853 1 -0.03275299072265625 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 222.90608638201826 5.30244611075932E-24 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 107.31 0 0 8.9679 8.9679 91.698 0 0 0 13.797994128469654 52.807510592077755 13.797994128469654 8.226825097560422 0 2.774227503252014 1.5228787452803376 0.8441876774005248 0.7302046884880937 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]WD{I|L}{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]WD{I|L}{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGGG{M(Oxidation (M))|F} 8.9679;8.2804;8.1984;7.8802;7.5108;7.2122;7.1927;6.8222;6.4427;6.1347 +;-;-;-;-;-;-;-;-;- + 13465 NaN NaN 842692 NaN 19383 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23656 93.789 NaN 190120 35 0 21555 0.261 + 3934 EPVWPVYLI 9 47 558.3102786918099 1114.6060044504197 2 558.3104248046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _EPVWPVYLI_ REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF;REV__ENST00000484445.5_1_1:40915787-40916492:+|nuORF 15.847184025352803 0.2234401846867398 1 VY{I|L}{I|L} 4 -1 30.138 0 0 2.7039 0 0 608.295326008156 0 608.295326008156 0 14.15205560610346 0 0 0 0.9247425010840047 0 0 0 VY{I|L}{I|L} 2.7039 + + 56 NaN NaN 116837.9 NaN 19384 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23657 93.792 NaN 152060 35 0 19010 0.261 + -1 ERFRTCNNF 9 57 622.285553799086 1242.5565546649718 2 622.2839965820312 MULTI HCD FTMS 0 0 0 23654 19137.875 0.17083855076011414 2 -0.04557037353515625 3 Carbamidomethyl (C) _ERFRTC(Carbamidomethyl (C))NNF_ REV__ENSG00000155592|ENST00000328086|ZKSCAN2;REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF 17.11289562659939 0.2125047172822487 1 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F} 9 -1 + 48.082 0 0 3.8696 3.8696 83.153 0 0 0 9.1883902458882 23.645162531850872 9.1883902458882 7.703037561203843 0 1 1.3010299956639813 0 0 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F};[YN][KT]DD{I|L}NN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]ARN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}GGN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NGG{M(Oxidation (M))|F};[YN][KT]DDARN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]ARGG{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]A[VG]N{M(Oxidation (M))|F};[YN][KT][WD]RN{M(Oxidation (M))|F};[YN]{I|L}[HA][HN]{I|L}D{M(Oxidation (M))|F} 3.8696;3.2497;3.147;3.1285;3.1285;2.527;2.4059;2.4059;2.4037;2.2806 -;-;-;-;-;-;-;-;-;- 504 NaN NaN 102062.8 NaN 19385 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23658 93.796 NaN 125940 35 0 13863 0.263 + 34007 YLYLFALV 8 50 501.2900337284629 1000.5655145237258 2 501.8153076171875 MULTI HCD FTMS 0 0 0 23654 9814.78515625 0.19239059490289753 -1 0.02625274658203125 4 Unmodified _YLYLFALV_ REV__ENSG00000110921|ENST00000228510|MVK;REV__ENST00000537237.5_1_12:110017641-110029070:+|nuORF;REV__MVK|p.A141Rfs*18|1|0.2|ENSG00000110921|chr12:109581435-109581435|C/-|frameshift_variant 6.354104778181461 0.5325651638111438 1 VA 2 -1 10.969 0 0 1.0963 0 0 130.04426844728283 697.3936355190424 827.4379039663252 0 0 0 0 0 0 0 0 0 VA 1.0963 - 25 + NaN NaN 101382.5 NaN 19386 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23659 93.799 NaN 185140 35 0 34609 0.262 + 7237 FSTHTCTEVTP 11 43 408.1865323253426 1221.537767576228 3 408.1865234375 MULTI HCD FTMS 0 0 0 23654 16693.431640625 0.1732343910550717 1 -0.03275299072265625 5 Unmodified _FSTHTCTEVTP_ ENST00000382252.5_1_7:6694764-6695430:+|nuORF 8.155526934196011 0.3831532958467648 1 AY[C(Carbamidomethyl (C))H]DW{I|L} 7 9 44.812 0 0 3.6685 0 0 0 273.12421594791255 273.12421594791255 37.337513372786475 0 0 0 0 0.3252574989159953 2 0 0 AY[C(Carbamidomethyl (C))H]DW{I|L} 3.6685 - 44 + NaN NaN 104970.8 NaN 19387 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23660 93.802 NaN 150590 35 0 8026.4 0.261 -1 0 62 437.2570625673022 1308.7493583021067 3 437.2577819824219 MULTI HCD FTMS 0 0 0 23654 31766.970703125 0.07547961962110762 42 -0.820892333984375 6 NaN NaN 1 Q 1 -1 5.4846 0 0 0.41907 0 0 634.3723574249567 543.3018282525999 1177.6741856775566 0 0 0 0 0 0 0 0 0 Q 0.41907 - 11 + NaN NaN 108029.1 NaN 19388 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23661 93.806 NaN 133120 35 0 19236 0.261 + 29146 TYILPNFFS 9 51 551.2840666087659 1100.5535802843317 2 551.2847290039062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TYILPNFFS_ REV__ENSG00000157219|ENST00000287907|HTR5A 16.149105407346934 0.22083165093524068 1 [YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 9 -1 + 50.965 0 0 4.6308 4.6308 88.757 0 0 0 17.614393726401687 43.03273116069214 17.614393726401687 20.796896906561027 0 1.6861818737241734 1.3979400086720375 0 0 [YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N;[YT]{I|L}[{I|L}P][YN]{[MS]|[{M(Oxidation (M))|F}A]} 4.6308;2.7411;0.55224 -;-;- 141 NaN NaN 103798.5 NaN 19389 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23662 93.809 NaN 74502 35 0 8302.4 0.261 + 13781 KYPSPFFVF 9 28 566.2977237017516 NaN 0 566.2973022460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 10.073929032068715 0.24642998803896465 1 V 1 8 11.237 0 0 0.99392 0 0 165.0808168664475 863.4096216527471 1028.4904385191946 0 0 0 0 0 0.4247425010840047 0 0 0 + V 0.99392 + + 3 + NaN NaN 93789.8 NaN 19390 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23663 93.812 NaN 42266 35 0 9913.7 0.261 + -1 LMCLEISYVF 10 30 637.8130942519571 NaN 0 637.81201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _LMC(Carbamidomethyl (C))LEISYVF_ REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92648.8 NaN 19391 4270 23654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23665 93.817 NaN 1968000 35 0 555160 0.327 + 6106 FPEGLFYEF 9 64 574.7685864343971 1147.522619935594 2 574.7688598632812 MULTI HCD FTMS 0 0 0 23664 1732137 0.5347939380714686 15 -0.23625946044921875 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 115.6920309560759 0.002013163348980568 1 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 94.148 0 0 8.2045 8.2045 96.108 0 0 0 19.194699959806982 74.45554701812867 19.194699959806982 37.0609971201948 0 2.75 0 1.805462187404089 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.2045;4.9748 -;- 322 NaN NaN 382120.4 NaN 19392 4271 23664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23666 93.821 NaN 261330 35 0 26511 0.261 -1 GVCSTVTLNFN 11 56 606.2904130885427 1210.5662732438852 2 606.2901611328125 MULTI HCD FTMS 0 0 0 23664 413728.15625 0.7927399983892877 2 -0.05230712890625 2 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 31.26834338654808 0.19318467762437158 1 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 7 -1 77.057 0 0 6.3654 0 0 290.12642104316564 0 290.12642104316564 0 67.34205732816768 0 0 0 2.6861818737241734 0 0.3252574989159953 0.4247425010840047 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 6.3654 - 627 NaN NaN 120806.1 NaN 19393 4271 23664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23667 93.825 NaN 95126 35 0 14972 0.264 + 5359 FGAPCQCR 8 43 441.1912751879049 NaN 0 440.79925537109375 PEAK HCD FTMS 0 0 0 23664 10297.244140625 0.2865998914308074 -2 0.0590057373046875 3 Unmodified _FGAPCQCR_ REV__ENSG00000162804|ENST00000310397|SNED1;REV__nc|ENSG00000162804|Q8TER0-3|SNED1;REV__nc|ENSG00000162804|Q8TER0-4|SNED1;REV__nc|ENSG00000162804|Q8TER0-5|SNED1 6.354104778181461 0.38822285293237185 1 {I|L} 1 -1 2.2185 0 0 0.252 0 0 345.13210984670985 419.1228121393188 764.2549219860286 0 0 0 0 0 0 0 0 0 {I|L} 0.252 - 3 + NaN NaN 103511.4 NaN 19394 4271 23664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23669 93.83 NaN 1903000 35 0 284290 0.327 + 1010 AYFPELIANF 10 95 592.8033437823678 1183.5921346315356 2 592.8032836914062 MULTI HCD FTMS 0 0 0 23668 980401.75 0.3466466530793254 3 -0.07733154296875 1 Unmodified _AYFPELIANF_ ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46 133.0521902211835 1.3591993275007461E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F} 10 0 + 104.12 0 0 8.7972 8.7972 94.423 0 0 0 20.993624753846092 90.97872853154654 20.993624753846092 12.659389507179355 0 3.1549471895720984 1.5228787452803376 0.3494850021680094 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PA[RK]AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}EP{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K[RP]AAN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PA[RK]AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}E{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}EP{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]};[YV]{[ES]|[DT]|[{I|L}C]}E{I|L}{I|L}AN{M(Oxidation (M))|F} 8.7972;7.7276;6.4316;6.1002;6.0939;5.8556;5.6574;5.2709;5.1917;5.0835 +;-;-;-;-;-;-;-;-;- + 3903 NaN NaN 368876.5 NaN 19395 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23670 93.834 NaN 116060 35 0 20719 0.261 -1 0 38 610.2914173168997 1218.5682817005993 2 610.291748046875 MULTI HCD FTMS 0 0 0 23668 207111.4375 0.21772727511649237 3 -0.07733154296875 2 NaN NaN 1 {I|L}Y{I|L}W 4 -1 57.735 0 0 4.7379 0 0 0 640.2361803116811 640.2361803116811 37.75239982726969 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 {I|L}Y{I|L}W 4.7379 - 30 + NaN NaN 93547.4 NaN 19396 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23671 93.838 NaN 135030 35 0 9006.7 0.264 -1 MKRLYVRPKF 10 55 451.93248683120106 1352.7756310938032 3 451.93267822265625 MULTI HCD FTMS 0 0 0 23668 327900.71875 0.45665149604739336 -16 0.4059295654296875 3 Oxidation (M) _M(Oxidation (M))KRLYVRPKF_ tr|U7T281|U7T281_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00582PE=4SV=1 1.7422754331352037 0.46608156381052757 1 K 1 -1 3.0989 0 0 0.22908 0 0 795.4563084393095 426.2019442193969 1221.6582526587065 0 0 0 0 0 0 0 0 0 K 0.22908 + + 10 + NaN NaN 110267.1 NaN 19397 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23672 93.841 NaN 411350 35 0 89583 0.261 + 30732 VPIQDTFPFL 10 53 588.818537838626 1175.6225227440518 2 588.8191528320312 MULTI HCD FTMS 0 0 0 23668 190816.78125 0.33879621182621933 -4 0.10803985595703125 4 Unmodified _VPIQDTFPFL_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 42.312485326615175 0.12533928745458864 1 QDT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 7 3 65.354 0 0 5.5591 0 0 309.20372206855626 0 309.20372206855626 0 46.31305428125607 0 0 0 2.079689690656103 0 0.4247425010840047 0 + QDT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 5.5591 + + 341 NaN NaN 141110.6 NaN 19398 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23673 93.844 NaN 535280 35 0 78650 0.261 + 10262 IIYPYEGNNF 10 79 615.2945388083774 1228.5745246835547 2 615.29541015625 MULTI HCD FTMS 0 0 0 23668 164596.03125 0.5229724400223364 3 -0.07733154296875 5 Unmodified _IIYPYEGNNF_ REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1 18.721224879955976 0.3359999958351898 1 [YN][KT]DT{I|L}NN{M(Oxidation (M))|F} 10 -1 + 64.604 0 0 5.2585 5.2585 86.012 0 0 0 14.11011940247738 26.77170143796379 14.11011940247738 9.164539485499262 0 0.7059771852360797 1.5228787452803376 0.6747425010840047 0.6694451763165201 [YN][KT]DT{I|L}NN{M(Oxidation (M))|F};[YN][KT]DT{I|L}GGN{M(Oxidation (M))|F};[YN][KT]DT{I|L}NGG{M(Oxidation (M))|F};[YN][KT]D{[DA]|[EG]}QK{M(Oxidation (M))|F};[YN]AWVA[KC]K{M(Oxidation (M))|F};[RH]QWD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]EE{[WS]|[C(Carbamidomethyl (C)){I|L}]}QK{M(Oxidation (M))|F};[YN]AWV{[TV]|[{I|L}S]}{[ET]|[MV]}{M(Oxidation (M))|F};[YN]AW[W{I|L}]{[ET]|[MV]}{M(Oxidation (M))|F};[RH][AG]WD{I|L}NN{M(Oxidation (M))|F} 5.2585;4.5125;4.5125;3.9759;3.7499;3.1007;2.6573;2.6493;2.506;2.3512 -;-;-;-;-;-;-;-;-;- 4308 NaN NaN 169265.5 NaN 19399 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23674 93.848 NaN 259190 35 0 34162 0.261 -1 0 51 585.7595504324721 1169.5045479317441 2 586.2613525390625 MULTI HCD FTMS 0 0 0 23668 75475.078125 0.24822444473815494 16 -0.26554107666015625 6 NaN NaN 1 Y{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EPE 7 -1 42.395 0 0 3.6251 0 0 316.10252577949376 0 316.10252577949376 0 23.81182901342207 0 0 0 0.8807196863200843 0 0.4247425010840047 0 Y{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EPE 3.6251 - 84 NaN NaN 117914.6 NaN 19400 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23675 93.851 NaN 127740 35 0 23440 0.261 + 28594 TQCIKILSL 9 36 509.80369160935624 NaN 0 509.7948303222656 PEAK HCD FTMS 0 0 0 23668 17311.591796875 0.35028784073839997 -1 0.0128173828125 7 Unmodified _TQCIKILSL_ REV__ENST00000482301.1_1_3:49714104-49717481:+|nuORF 17.11289562659939 0.20677709319598864 1 S{I|L}[HA]{M(Oxidation (M))|F}{I|L} 6 -1 18.416 0 0 1.8098 0 0 131.1130017471416 215.10360132388908 346.2166030710307 0 0 0 0 0 0 0 0 0 S{I|L}[HA]{M(Oxidation (M))|F}{I|L} 1.8098 - 19 + NaN NaN 103252.1 NaN 19401 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23676 93.854 NaN 188780 35 0 30800 0.261 -1 YLLDTSECCF 10 64 625.756309690662 1249.4980664481238 2 625.7556762695312 MULTI HCD FTMS 0 0 0 23668 73105.046875 0.2841787204288431 3 -0.07733154296875 8 Carbamidomethyl (C) _YLLDTSEC(Carbamidomethyl (C))CF_ ENST00000300469.13_1_20:33117938-33118070:+|nuORF 7.289230182591677 0.43672065049472153 1 [Y{I|L}]{I|L}W 4 -1 29.157 0 0 2.3335 0 0 0 671.1643011495488 671.1643011495488 3.226825097560422 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 [Y{I|L}]{I|L}W 2.3335 - 50 NaN NaN 123057.7 NaN 19402 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23677 93.858 NaN 178900 35 0 34021 0.263 + 22339 QPLIIAVVL 9 40 483.3233124518298 964.6320719704596 2 483.3238525390625 MULTI HCD FTMS 0 0 0 23668 42446.640625 0.4875274320939864 -7 0.18344879150390625 9 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 23.1484247019978 0.1603590852062899 1 V{I|L} 2 7 25.969 0 0 2.6921 0 0 734.467839885154 0 734.467839885154 0 14.731975075880328 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 9 NaN NaN 108023.7 NaN 19403 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23678 93.861 NaN 210430 35 0 26013 0.261 -1 YFDLLGELM 9 47 558.767432013302 1115.520311093404 2 558.767578125 MULTI HCD FTMS 0 0 0 23668 40086.2578125 0.32151386139134996 2 -0.06131744384765625 10 Oxidation (M) _YFDLLGELM(Oxidation (M))_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 32.30548876998284 0.10066689432505688 1 {I|L}W{I|L}{M(Oxidation (M))|F} 4 -1 48.488 0 0 4.3466 0 0 538.2414308016492 0 538.2414308016492 0 39.02372200412145 0 0 0 1.805462187404089 0 0 0 {I|L}W{I|L}{M(Oxidation (M))|F} 4.3466 - 60 NaN NaN 128110.5 NaN 19404 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23679 93.864 NaN 258910 35 0 37116 0.261 + 29927 VFEEAFFSF 9 54 561.7605864801794 1121.5066200271588 2 561.7606201171875 MULTI HCD FTMS 0 0 0 23668 35671.54296875 0.23214278632709986 -3 0.0718231201171875 11 Unmodified _VFEEAFFSF_ ENSG00000004939|ENST00000262418|SLC4A1;ENSG00000164889|ENST00000413384|SLC4A2;nc|ENSG00000004939|P02730-2|SLC4A1;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant 61.357469665136826 0.01568246967499496 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 4 + 56.353 0 0 5.0248 5.0248 84.506 0 0 0 0.079015433336167 33.33281569033012 0.079015433336167 6.817496819840656 0 1.3807196863200843 1.2218487496163564 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[RD][WH]S{M(Oxidation (M))|F} 5.0248;4.4169;3.8186;1.9706 -;-;-;- 152 NaN NaN 135122 NaN 19405 4272 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23681 93.869 NaN 276000 35 0 46778 0.327 + 15646 LPEFVEPFL 9 40 545.7946411627574 1089.5747293923148 2 545.7945556640625 MULTI HCD FTMS 0 0 0 23680 156226.0625 0.14832580375530657 8 -0.12410736083984375 1 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 25.399314129420986 0.14091189997036632 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 63.082 0 0 5.7896 5.7896 92.826 0 0 0 13.133637307377057 63.082137524177995 13.133637307377057 63.082137524177995 0 1.5 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 5.7896 - 35 NaN NaN 118808.4 NaN 19406 4273 23680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23682 93.876 NaN 251800 35 0 28545 0.267 + 26861 SYIPLFPQL 9 47 539.3024463443785 1076.590339755557 2 539.8143920898438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 24.020572477871973 0.15282392193088168 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]YP[KP] 9 3 + 23.847 0 0 2.215 2.215 78.922 0 0 0 2.2430121199290944 19.24288105545884 2.2430121199290944 0.4845500650402812 0 0.8494850021680094 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]YP[KP];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P[KP] 2.215;2.17 -;- 97 NaN NaN 118380 NaN 19407 4273 23680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23683 93.88 NaN 171230 35 0 21237 0.261 + 30408 VLPDMFFSF 9 45 559.7652146393319 NaN 0 559.7654418945312 PEAK HCD FTMS 0 0 0 23680 108692.1796875 0.7953456105809797 -4 0.1113128662109375 3 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 46.020951573049366 0.05896589607441476 1 {M(Oxidation (M))|F}S 2 7 29.776 0 0 2.6645 0 0 718.3364462690951 162.05608545474846 880.3925317238435 0 0 0 0 0 1.5 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S 2.6645 + + 53 + NaN NaN 103778.8 NaN 19408 4273 23680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23684 93.883 NaN 92632 35 0 11432 0.261 + -1 ERFRTCNNF 9 44 622.285553799086 1242.5565546649718 2 622.2840576171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _ERFRTC(Carbamidomethyl (C))NNF_ REV__ENSG00000155592|ENST00000328086|ZKSCAN2;REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF 6.2057823575117 0.30397260197431997 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 12.76 0 0 1.0269 0 0 852.3665655065719 0 852.3665655065719 0 1.3059715953668434 0 0 0 0 0 0 0.3807196863200844 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.0269 - 39 + NaN NaN 92018.9 NaN 19409 4273 23680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23685 93.886 NaN 65311 35 0 6282.3 0.261 + 32625 WLRREPLVTP 10 44 633.8713549428048 NaN 0 633.8724975585938 PEAK HCD FTMS 0 0 0 23680 29224.140625 0.633499435374993 -1 0.03948974609375 5 Unmodified _WLRREPLVTP_ REV__ENSG00000065325|ENST00000262441|GLP2R;REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF 3.5964929083625545 0.337106189561315 1 {I|L}H 2 -1 7.0783 0 0 0.55923 0 0 847.5063379600252 165.06211267642814 1012.5684506364533 0 0 0 0 0 0 0 0 0 {I|L}H 0.55923 - 16 + NaN NaN 93913.7 NaN 19410 4273 23680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23687 93.891 NaN 738240 35 0 164260 0.327 + 3537 EINPLLELI 9 42 527.3132151831177 1052.6118774330353 2 527.313232421875 MULTI HCD FTMS 0 0 0 23686 287463.65625 0.19280474483718893 5 -0.0699005126953125 1 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 63.960520009940105 0.0120409805053046 1 {[QN]|[E{I|L}]|[KN]}[NP]{I|L}{I|L}E{I|L}{I|L} 9 -1 + 77.642 0 0 7.3761 7.3761 85.734 0 0 0 18.88621229653701 45.94720941673181 18.88621229653701 0.44022814763920337 0 1.9247425010840047 1.5228787452803376 0.3054621874040891 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}[NP]{I|L}{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}E{I|L}{I|L} 7.3761;7.3343 +;- + 50 NaN NaN 194025.3 NaN 19411 4274 23686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23688 93.895 NaN 250310 35 0 44974 0.261 + 4872 FAFDEIVAL 9 35 512.7710785130541 1023.5276040929083 2 512.77099609375 MULTI HCD FTMS 0 0 0 23686 222542.171875 0.3990100542685313 5 -0.0699005126953125 2 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 34.10243960390752 0.09241788333544565 1 {I|L}VA{I|L} 4 5 46.938 0 0 4.5859 0 0 609.243244751049 0 609.243244751049 0 38.7113751626007 0 0 0 1.5 0 0 0 + {I|L}VA{I|L} 4.5859 + + 25 NaN NaN 119656.9 NaN 19412 4274 23686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23689 93.899 NaN 225000 35 0 12809 0.261 -1 0 65 457.6082332782322 1369.8028704348967 3 457.6087951660156 MULTI HCD FTMS 0 0 0 23686 136935.78125 0.47475027085590465 1 -0.01601409912109375 3 NaN NaN 1 [YE]{M(Oxidation (M))|F} 3 -1 19.973 0 0 1.4581 0 0 0 927.6101878999935 927.6101878999935 11.319459175083612 0 0 0 0 0 1.3010299956639813 0 0 [YE]{M(Oxidation (M))|F} 1.4581 - 17 NaN NaN 129471.1 NaN 19413 4274 23686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23690 93.902 NaN 182330 35 0 21339 0.261 + 17233 LYNWEVAIF 9 59 577.7979246033001 1153.5812962734 2 577.7978515625 MULTI HCD FTMS 0 0 0 23686 88017.2265625 0.2251349506198872 7 -0.1022796630859375 4 Unmodified _LYNWEVAIF_ ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF 34.40172386719151 0.0910440009062557 1 [YN]{I|L}[WE]VA{I|L}{M(Oxidation (M))|F} 9 2 + 38.069 0 0 3.3 3.3 86.003 0 0 0 0.04695582781786101 9.792418483414956 0.04695582781786101 13.266062568876723 0 1.4489700043360187 0 0 0.4247425010840047 [YN]{I|L}[WE]VA{I|L}{M(Oxidation (M))|F};[YN]{I|L}[WE]VA{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}V{I|L}[YE][QP]{M(Oxidation (M))|F};[YN]{I|L}{[VA]|[{I|L}G]}[WE]{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WC(Carbamidomethyl (C))][KA]A{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[VA]|[{I|L}G]}[WE]{M(Oxidation (M))|F}{I|L};[YN]{I|L}{[VA]|[{I|L}G]}[W{M(Oxidation (M))|F}]E{I|L} 3.3;2.1501;1.9566;1.5033;0.93493;0.35331;0.22284 -;-;-;-;-;-;- 214 NaN NaN 119320.3 NaN 19414 4274 23686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23692 93.907 NaN 325310 35 0 32565 0.327 -1 GVCSTVTLNFN 11 77 606.2904130885427 1210.5662732438852 2 606.289794921875 MULTI HCD FTMS 0 0 0 23691 133725.09375 0.25622919059906824 6 -0.08626556396484375 1 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 14.405379775768559 0.3315678654765638 1 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 7 -1 71.803 0 0 5.9313 0 0 290.12596327949376 0 290.12596327949376 0 48.597754408169465 0 0 0 2.610924374808178 0 0 0.4247425010840047 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 5.9313 - 806 NaN NaN 133266 NaN 19415 4275 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23693 93.911 NaN 249960 35 0 47566 0.261 + 15455 LPDLLIFQM 9 46 553.3017869050049 1104.5890208768096 2 553.3021240234375 MULTI HCD FTMS 0 0 0 23691 42118.12890625 0.148340094658181 -6 0.1491546630859375 2 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 49.93300154707207 0.03166451819912738 1 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 47.871 0 0 4.3338 4.3338 85.196 0 0 0 2.5484292922936334 33.34507800221289 2.5484292922936334 9.208187539523749 0 1.805462187404089 0 0.3494850021680094 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F} 4.3338;3.5002 -;- 79 NaN NaN 112415.4 NaN 19416 4275 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23694 93.915 NaN 315630 35 0 46703 0.261 + 26862 SYIPLFPQL 9 53 539.3024463443785 1076.590339755557 2 539.30224609375 MULTI HCD FTMS 0 0 0 23691 33504.59765625 0.0656919928466825 -5 0.12290191650390625 3 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 32.78568957990786 0.09846250359632436 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 29.402 0 0 2.731 2.731 86.401 0 0 0 7.147642715192507 23.917046634221325 7.147642715192507 16.765997036641593 0 1.7059771852360797 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}P][KP] 2.731;1.1737 +;- + 87 NaN NaN 160405.5 NaN 19417 4275 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23695 93.918 NaN 113720 35 0 20530 0.261 + -1 EMLYCSYDAV 10 49 625.756309690662 1249.4980664481238 2 625.75732421875 MULTI HCD FTMS 0 0 0 23691 36350.41796875 0.14130372261542992 6 -0.08626556396484375 4 Carbamidomethyl (C) _EMLYC(Carbamidomethyl (C))SYDAV_ REV__ENST00000438138.1_1_10:71539180-71539366:+|nuORF 3.2813086475875832 0.45793521633868084 1 W 1 -1 5.4846 0 0 0.43894 0 0 535.1449303170676 525.2492159479124 1060.39414626498 0 0 0 0 0 0 0 0 0 W 0.43894 - 10 + NaN NaN 96402.4 NaN 19418 4275 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23697 93.923 NaN 1882200 35 0 161860 0.327 + 11171 IYIWDLNNF 9 99 599.3004589776755 1196.5863650221509 2 599.3008422851562 MULTI HCD FTMS 0 0 0 23696 1095815.5 0.13821195635071362 7 -0.08880615234375 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 205.7785088242617 1.0412822304099307E-17 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 107.07 0 0 8.9477 8.9477 91.261 0 0 0 16.42011712512675 62.52936087320853 16.42011712512675 7.257724967479859 0 2.6989700043360187 1.5228787452803376 0.5941876774005248 0.7302046884880937 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]WD{I|L}{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]WD{I|L}{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGGG{M(Oxidation (M))|F} 8.9477;8.3411;8.1781;7.886;7.5716;7.2795;7.1159;6.802;6.3463;6.1954 +;-;-;-;-;-;-;-;-;- + 6175 NaN NaN 373737.2 NaN 19419 4276 23696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23698 93.927 NaN 373480 35 0 26146 0.261 + 14454 LESWVLFDTW 10 81 648.3202569680345 1294.625961002869 2 648.319580078125 MULTI HCD FTMS 0 0 0 23696 185304.09375 0.514398966505643 -1 0.0159454345703125 2 Unmodified _LESWVLFDTW_ REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF 25.399314129420986 0.2735354021946395 1 [PA]E{I|L}G{M(Oxidation (M))|F}Y{[DS]|[MA]|[CV]|TT}T[VP] 12 -1 + 60.05 0 0 4.6384 4.6384 82.702 0 0 0 20.960244700585022 3.221784748895658 3.221784748895658 4.151051905782495 0 2.774227503252014 0 0.9947026752325154 0 [PA]E{I|L}G{M(Oxidation (M))|F}Y{[DS]|[MA]|[CV]|TT}T[VP];[PA]E{I|L}T{I|L}T{[DS]|[MA]|[CV]|TT}YW;[MT]AY[{I|L}T]P{[DS]|[MA]|[CV]|TT}T[VP];[MT]A[{I|L}T]PY{[DS]|[MA]|[CV]|TT}T[VP];[{I|L}T]T{[DS]|[MA]|[CV]|TT}P[{I|L}T]YT[PS];[MT]A[{I|L}T]YP{[DS]|[MA]|[CV]|TT}T[VP];{[DS]|[MA]|[CV]|TT}T[{I|L}T]PY{[DS]|[MA]|[CV]|TT}T[VP];{I|L}T{I|L}[CS]PY{[DS]|[MA]|[CV]|TT}T[VP];{I|L}TT{[DS]|[MA]|[CV]|TT}PY{[DS]|[MA]|[CV]|TT}T[VP];{[DS]|[MA]|[CV]|TT}T[{I|L}T]YP{[DS]|[MA]|[CV]|TT}T[VP] 4.6384;4.3178;3.9493;3.8888;3.6429;3.6375;3.5824;3.4686;3.3731;3.3312 -;-;-;-;-;-;-;-;-;- 1281 + NaN NaN 144884.5 NaN 19420 4276 23696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23699 93.931 NaN 352680 35 0 63480 0.262 + 2403 DPLIVRYCK 9 64 553.8031616210938 NaN 0 553.8031616210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _DPLIVRYCK_ ENST00000338785.7_1_21:38885336-38885855:+|nuORF 11.640296217721598 0.23883959125015683 1 {M(Oxidation (M))|F}Q 2 9 16.158 0 0 1.4642 0 0 663.416976483617 162.02277551822502 825.439752001842 0 0 0 0 0 0 0 0 0.6694451763165201 {M(Oxidation (M))|F}Q 1.4642 - 37 + NaN NaN 148341 NaN 19421 4276 23696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23701 93.936 NaN 100630 35 0 5981.1 0.327 -1 0 46 437.2570625673022 1308.7493583021067 3 437.2578125 MULTI HCD FTMS 0 0 0 23700 93091.984375 0.22119035636305964 49 -1.035003662109375 1 NaN NaN 1 K 1 -1 1.5938 0 0 0.12178 0 0 762.424176272613 415.2125338190063 1177.6367100916193 0 0 0 0 0 0 0 0 0 K 0.12178 - 5 + NaN NaN 107526.6 NaN 19422 4277 23700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23702 93.94 NaN 207270 35 0 46413 0.261 + 11172 IYIWDLNNF 9 46 599.3004589776755 1196.5863650221509 2 601.2242431640625 MULTI HCD FTMS 0 0 0 23700 47909.43359375 0.09505955522524952 7 -0.085296630859375 2 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 7.289230182591677 0.29575926068275815 1 {I|L} 1 8 4.6041 0 0 0.38477 0 0 575.3094347448516 505.1580904596313 1080.4675252044829 0 0 0 0 0 0 0 0 0 + {I|L} 0.38477 + + 39 + NaN NaN 117698.9 NaN 19423 4277 23700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23703 93.944 NaN 96496 35 0 28821 0.261 + 18398 MPRLLEPPVLT 11 35 633.369535490943 NaN 0 633.3692626953125 PEAK HCD FTMS 0 0 0 23700 115742.703125 1 0 0 3 Unmodified _MPRLLEPPVLT_ ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675|TAF1 2.6312355333042263 0.3346560860168035 1 D 1 11 2.4743 0 0 0.19564 0 0 704.375837484036 442.2964266412719 1146.672264125308 0 0 0 0 0 0 0 0 0 D 0.19564 - 6 + NaN NaN 96214.4 NaN 19424 4277 23700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23705 93.948 NaN 1417700 35 0 394150 0.327 + 6107 FPEGLFYEF 9 65 574.7687124378033 NaN 0 574.7686767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 78.14939416004806 0.0035947786853287988 1 EY{M(Oxidation (M))|F} 3 6 46.242 0 0 4.0297 0 0 165.07904250312657 540.2467195268106 705.3257620299371 0 0 0 0 0 2 0 1.305462187404089 0 EY{M(Oxidation (M))|F} 4.0297 - 79 NaN NaN 293347.7 NaN 19425 4278 23704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23706 93.953 NaN 500120 35 0 52879 0.261 + 10148 IFQDVLLQF 9 62 561.8131199348373 1121.6116869364746 2 561.8132934570312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IFQDVLLQF_ ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000184634|Q93074-3|MED12 45.739877483867886 0.03899552410870734 1 [Q{I|L}]{M(Oxidation (M))|F}DV{I|L}{I|L}Q{M(Oxidation (M))|F} 9 2 + 63.12 0 0 5.6276 5.6276 84.315 0 0 0 3.979400086720375 9.13025161900594 3.979400086720375 3.979400086720375 0 2.1549471895720984 0 0 0.23965182871044374 [Q{I|L}]{M(Oxidation (M))|F}DV{I|L}{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DV{I|L}{I|L}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VQV{I|L}{I|L}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EQV{I|L}{I|L}Q{M(Oxidation (M))|F};[Q{I|L}]{M(Oxidation (M))|F}DV{I|L}{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DV{I|L}{I|L}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VQV{I|L}{I|L}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EQV{I|L}{I|L}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AADV{I|L}{I|L}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[AG]V{I|L}{I|L}Q{M(Oxidation (M))|F} 5.6276;5.2728;5.1316;5.0719;4.8066;4.4518;4.3106;4.2509;4.1079;4.0969 -;-;-;-;-;-;-;-;-;- 449 NaN NaN 152788.3 NaN 19426 4278 23704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23707 93.956 NaN 151900 35 0 18947 0.261 + 27496 SYYSSPFAFF 10 43 608.2714377057355 1214.5283224782709 2 608.2725830078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SYYSSPFAFF_ ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF;ENST00000492084.5_1_6:31654991-31670409:-|nuORF 56.17704186161178 0.05532499666593632 1 SS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 3 55.438 0 0 4.5645 0 0 413.15825087715 0 413.15825087715 0 53.84388861894038 0 0 0 2.274227503252014 0 0.8494850021680094 0 + SS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5645 + + 31 NaN NaN 103222.7 NaN 19427 4278 23704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23710 93.967 NaN 685750 35 0 82386 0.327 + 1011 AYFPELIANF 10 73 592.802425157707 1183.590297382214 2 592.8029174804688 MULTI HCD FTMS 0 0 0 23709 274616.8125 0.4630586918570799 1 -0.025482177734375 1 Unmodified _AYFPELIANF_ ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46 86.33184430468982 0.0012839548613462067 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[EP]{I|L}{I|L}AN{M(Oxidation (M))|F} 10 0 + 77.145 0 0 6.5179 6.5179 85.826 0 0 0 14.644390713981807 45.88554074136319 14.644390713981807 3.9190124517684097 0 2.7302046884880937 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[EP]{I|L}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}G{[CP]|[EA]}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}M{I|L}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[EP]{I|L}{I|L}AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}GVDGN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}M{I|L}{I|L}AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[PA][RK]AN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}T]M{I|L}{I|L}AN{M(Oxidation (M))|F};[YV][DV]M{I|L}{I|L}AN{M(Oxidation (M))|F} 6.5179;6.1868;5.8228;5.7436;5.7153;5.0505;5.0485;4.6982;3.9899;3.7355 +;-;-;-;-;-;-;-;-;- + 1235 NaN NaN 183758.4 NaN 19428 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23711 93.972 NaN 691310 35 0 133060 0.261 + 30733 VPIQDTFPFL 10 51 588.818537838626 1175.6225227440518 2 589.320068359375 MULTI HCD FTMS 0 0 0 23709 218295.53125 0.38637351694268396 1 -0.025482177734375 2 Unmodified _VPIQDTFPFL_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 38.61474834105838 0.1574278268413918 1 VDT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 7 3 66.318 0 0 5.6411 0 0 338.19420058418126 0 338.19420058418126 0 38.870863778373916 0 0 0 1.6989700043360187 0 0.4247425010840047 0 VDT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 5.6411 - 228 NaN NaN 185415.2 NaN 19429 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23712 93.975 NaN 550980 35 0 33143 0.263 + 8002 GFLTKPVAA 9 84 452.26700268983683 NaN 0 452.26678466796875 PEAK HCD FTMS 0 0 0 23709 281700.5 0.4317583613519477 -2 0.01955413818359375 3 Unmodified _GFLTKPVAA_ REV__ENSG00000108559|ENST00000573584|NUP88;REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF;REV__NUP88|p.P245A|1|0.3|ENSG00000108559|chr17:5408857-5408857|G/C|missense_variant 3.944395688203298 0.27613285122220627 1 S 1 -1 4.6041 0 0 0.51014 0 0 184.1224863000446 628.3250826471311 812.4475689471758 0 0 0 0 0 0 0 0 0 S 0.51014 - 20 + NaN NaN 171971.6 NaN 19430 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23713 93.979 NaN 158740 35 0 20196 0.261 + 27631 TAISLFYEL 9 43 528.7855834960938 NaN 0 528.7855834960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 30.636539890814138 0.11600348607007434 1 EY{M(Oxidation (M))|F} 3 8 24.693 0 0 2.3393 0 0 131.09046746596306 482.26243005924067 613.3528975252037 0 0 0 0 0 1 0 0 0 EY{M(Oxidation (M))|F} 2.3393 - 32 + NaN NaN 102475.1 NaN 19431 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23714 93.982 NaN 244370 35 0 34081 0.261 -1 0 56 585.7595504324721 1169.5045479317441 2 585.7598876953125 MULTI HCD FTMS 0 0 0 23709 76071.9296875 0.15889876505140918 23 -0.446868896484375 5 NaN NaN 1 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 55.693 0 0 4.7621 0 0 316.1028004376969 0 316.1028004376969 0 34.26677000861204 0 0 0 1 0 0.4247425010840047 0 Y{M(Oxidation (M))|F}{I|L}GEPE 4.7621 - 141 NaN NaN 119934.6 NaN 19432 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23715 93.985 NaN 457620 35 0 48855 0.261 + 14455 LESWVLFDTW 10 83 648.3202569680345 1294.625961002869 2 648.8217163085938 MULTI HCD FTMS 0 0 0 23709 69806.09375 0.39370164088542003 6 -0.0853271484375 6 Unmodified _LESWVLFDTW_ REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF 24.020572477871973 0.2864316864133941 1 DT{I|L}TEET{I|L}TW 10 -1 66.894 0 0 5.1671 0 0 87.0397080476783 0 87.0397080476783 0 22.29671424215438 0 0 0 1.5189301784845295 0 1.5356668758921828 0 DT{I|L}TEET{I|L}TW 5.1671 - 3465 + NaN NaN 157882.9 NaN 19433 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23716 93.989 NaN 111490 35 0 6508 0.263 -1 0 59 516.3142569266997 1030.6139609201994 2 516.314453125 MULTI HCD FTMS 0 0 0 23709 59485.62890625 0.0636671692036002 16 -0.2966461181640625 7 NaN NaN 1 {I|L} 1 -1 3.9794 0 0 0.38612 0 0 229.2019868985181 685.2982882135374 914.5002751120555 0 0 0 0 0 0 0 0 0 {I|L} 0.38612 - 5 + NaN NaN 97329.3 NaN 19434 4280 23709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23718 93.993 NaN 205660 35 0 26443 0.327 + 7289 FTLRWATW 8 47 540.7866780305321 1079.5588031278642 2 541.2891235351562 MULTI HCD FTMS 0 0 0 23717 138877.078125 1 0 0 1 Unmodified _FTLRWATW_ ENST00000357429.10_1_7:1166987-1177867:-|nuORF 13.50788311687929 0.4944073034352369 1 E[WK]{I|L}[YR]W 7 6 + 25.986 0 0 2.4071 2.4071 86.003 0 0 0 3.767507096020992 6.153113369619305 3.767507096020992 15.351132016973493 0 0 0 0 0 E[WK]{I|L}[YR]W;[TA][RD]{I|L}[YR]W 2.4071;0.98511 -;- 66 + NaN NaN 109736.1 NaN 19435 4281 23717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23719 93.998 NaN 37496 35 0 4308 0.261 + 7047 FQECLCGAVWS 11 31 621.7672119140625 NaN 0 621.7672119140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FQECLCGAVWS_ ENST00000216160.10_1_22:39827477-39827837:+|nuORF 2.735195868890462 0.3343611804837492 1 {M(Oxidation (M))|F}{I|L} 2 9 10.969 0 0 0.88352 0 0 128.9547358380874 849.4019259088499 978.3566617469373 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.88352 - 10 + NaN NaN 90638.4 NaN 19436 4281 23717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23721 94.002 NaN 113030 35 0 9737.2 0.327 + 1722 CIPKLKLLWP 10 56 605.8718682331544 1209.7291835331087 2 605.8728637695312 MULTI HCD FTMS 0 0 0 23720 39584.4140625 0.18214182877146415 -6 0.07962799072265625 1 Unmodified _CIPKLKLLWP_ ENST00000396451.4_1_12:10531279-10532321:-|nuORF 0.45834013312273997 0.47287763746706196 1 D{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 5 9 18.06 0 0 1.4929 0 0 588.4528906637712 0 588.4528906637712 0 6.19998100259714 0 0 0 0 0 0 0.4247425010840047 D{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 1.4929 - 291 + NaN NaN 100679.2 NaN 19437 4282 23720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23722 94.007 NaN 248740 35 0 18499 0.261 -1 TYVKYQVPC 9 69 579.2887401918587 1156.5629274505172 2 579.2865600585938 MULTI HCD FTMS 0 0 0 23720 32484.943359375 0.38791538312271084 -2 0.0347900390625 2 Carbamidomethyl (C) _TYVKYQVPC(Carbamidomethyl (C))_ ENSG00000198854|ENST00000368775|C1orf68 10.823927491677226 0.26684000660059787 1 [YT]V{M(Oxidation (M))|F}[HK]C{M(Oxidation (M))|F}{I|L} 9 -1 + 43.756 0 0 3.7833 3.7833 85.506 0 0 0 0.5243280270601502 37.10077508221466 0.5243280270601502 9.94850021680093 0 1.4247425010840047 1.6989700043360187 0 0 [YT]V{M(Oxidation (M))|F}[HK]C{M(Oxidation (M))|F}{I|L};[YT]V[WP]{M(Oxidation (M))|F}[MT]{I|L};[YT]V{M(Oxidation (M))|F}[WP][MT]{I|L};[YT]V[WP]{M(Oxidation (M))|F}V[{M(Oxidation (M))|F}V];[YT]V{M(Oxidation (M))|F}[WP]V[{M(Oxidation (M))|F}V];[YT]V{M(Oxidation (M))|F}QQ[PG]{[MS]|[{M(Oxidation (M))|F}A]};[YT]Q{[MS]|[{M(Oxidation (M))|F}A]}R[PG]{[MS]|[{M(Oxidation (M))|F}A]} 3.7833;2.9231;2.9231;2.9033;2.9033;1.9424;0.44637 -;-;-;-;-;-;- 173 NaN NaN 119449.7 NaN 19438 4282 23720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23724 94.012 NaN 632450 35 0 36754 0.327 + 9899 IATTGVRVS 9 100 452.26700268983683 NaN 0 452.2673645019531 PEAK HCD FTMS 0 0 0 23723 194446.265625 0.2980250337406414 1 -0.0091552734375 1 Unmodified _IATTGVRVS_ ENSG00000105229|ENST00000262971|PIAS4;PIAS4|p.E314K|1|0.22|ENSG00000105229|chr19:4033132-4033132|G/A|missense_variant 6.2057823575117 0.2651744870083793 1 Q 1 9 3.4949 0 0 0.38723 0 0 228.14709024119867 543.3034151666624 771.4505054078611 0 0 0 0 0 0 0 0 0 Q 0.38723 - 39 + NaN NaN 179598.2 NaN 19439 4283 23723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23725 94.016 NaN 293300 35 0 55123 0.261 + 3538 EINPLLELI 9 49 527.3132151831177 1052.6118774330353 2 527.3137817382812 MULTI HCD FTMS 0 0 0 23723 94359.984375 0.06328818379197461 13 -0.25267791748046875 2 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 28.494509381512117 0.11816142465008336 1 {I|L}{I|L}E{I|L}{I|L} 5 -1 51.454 0 0 4.8882 0 0 453.2191202176579 0 453.2191202176579 0 40.996075289514096 0 0 0 1.5 0 0 0 {I|L}{I|L}E{I|L}{I|L} 4.8882 + + 54 NaN NaN 129755.5 NaN 19440 4283 23723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23728 94.027 NaN 505230 35 0 54610 0.327 + 4520 EYLDLFGNTF 10 78 609.7881312450564 1217.5617095569128 2 610.2905883789062 MULTI HCD FTMS 0 0 0 23727 59090.17578125 0.2600039869231122 -4 0.03438568115234375 1 Unmodified _EYLDLFGNTF_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 121.34585337138759 3.68992589341548E-05 1 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F} 10 2 + 91.06 0 0 7.4788 7.4788 89.635 0 0 0 8.844340914803936 8.844340914803936 8.844340914803936 8.844340914803936 0 2.2059771852360797 1.6989700043360187 1.8979400086720375 0 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F};Y{I|L}ED{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F};[Y{I|L}]ED{I|L}{M(Oxidation (M))|F}GGGT{M(Oxidation (M))|F};[Y{I|L}]ED{I|L}G{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[YE]{I|L}D{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F};[Y{I|L}]ED{I|L}G{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};Y{I|L}ED{M(Oxidation (M))|F}{I|L}GNT{M(Oxidation (M))|F};[YE]{I|L}D{I|L}{M(Oxidation (M))|F}GGGT{M(Oxidation (M))|F};[YE]{I|L}D{I|L}G{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[YE]{I|L}D{I|L}G{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F} 7.4788;6.7524;6.7261;6.2249;5.7336;5.4722;5.4156;4.9809;4.4796;3.7269 -;-;-;-;+;-;-;-;-;- + 548 NaN NaN 162842.3 NaN 19441 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23729 94.032 NaN 128630 35 0 34101 0.261 + 22891 QYPPVNWAALL 11 37 636.3426892136545 1270.6708254941088 2 636.343017578125 MULTI HCD FTMS 0 0 0 23727 23490.083984375 0.21911946242930724 1 -0.02545928955078125 2 Unmodified _QYPPVNWAALL_ ENSG00000188352|ENST00000338382|FOCAD 10.799506525563784 0.36298595732910816 1 AA{I|L}{I|L} 4 7 36.938 0 0 2.907 0 0 884.4175892560562 0 884.4175892560562 0 36.938200260161125 0 0 0 0.5 0 0 0 + AA{I|L}{I|L} 2.907 + + 7 NaN NaN 108460.1 NaN 19442 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23730 94.035 NaN 107760 35 0 16079 0.263 + 4873 FAFDEIVAL 9 35 512.7710785130541 1023.5276040929083 2 512.771484375 MULTI HCD FTMS 0 0 0 23727 46607.91796875 0.08356630889942056 15 -0.3018646240234375 3 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 21.74664581756881 0.17247014374749275 1 {I|L}VA{I|L} 4 5 46.938 0 0 4.5859 0 0 609.242479392775 0 609.242479392775 0 34.17399041687222 0 0 0 1.5 0 0 0 + {I|L}VA{I|L} 4.5859 + + 21 NaN NaN 92674.7 NaN 19443 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23731 94.038 NaN 68502 35 0 6315.8 0.261 + 7892 FYVLSTLAF 9 38 530.7893495108823 1059.5641460885645 2 530.7893676757812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FYVLSTLAF_ ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}TA{I|L}T{M(Oxidation (M))|F} 6 5 65.706 0 0 6.2012 0 0 361.20027358222814 0 361.20027358222814 0 58.71645960868548 0 0 0 1.7302046884880937 0 0.4247425010840047 0 {M(Oxidation (M))|F}TA{I|L}T{M(Oxidation (M))|F} 6.2012 - 147 NaN NaN 91364.6 NaN 19444 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23732 94.042 NaN 195710 35 0 33249 0.261 -1 0 38 506.77887089011085 1011.5431888470217 2 506.7811584472656 MULTI HCD FTMS 0 0 0 23727 46722.859375 0.029367377822418377 -15 0.24355316162109375 5 NaN NaN 1 {I|L}{I|L}{I|L} 3 -1 35.445 0 0 3.5041 0 0 654.2863125174364 0 654.2863125174364 0 29.49092531119419 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L} 3.5041 - 22 NaN NaN 105575.2 NaN 19445 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23733 94.045 NaN 82420 35 0 9585.3 0.261 + -1 LEKLNKMKVF 10 32 422.58209139151086 NaN 0 422.58221435546875 PEAK HCD FTMS 0 0 0 23727 66608.7109375 1 0 0 6 Oxidation (M) _LEKLNKM(Oxidation (M))KVF_ REV__ENSG00000144749|ENST00000273261|LRIG1;REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF;REV__ENST00000496559.6_1_3:66430689-66456253:-|nuORF;REV__nc|ENSG00000144749|Q96JA1-2|LRIG1 1.7422754331352037 0.33869314273211465 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95985.4 NaN 19446 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23734 94.048 NaN 62794 35 0 6736.2 0.261 + 30155 VGVAPIVVVI 10 28 483.3234961891338 NaN 0 483.3234558105469 PEAK HCD FTMS 0 0 0 23727 17654.45703125 0.23099039626338155 -2 0.015899658203125 7 Unmodified _VGVAPIVVVI_ ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENSG00000114770|ENST00000334444|ABCC5;nc|ENSG00000114770|O15440-5|ABCC5 7.910154910731844 0.33341429274560913 1 V 1 9 11.99 0 0 1.2429 0 0 131.09545638020762 731.4464687229882 862.5419251031958 0 0 0 0 0 0.5 0 0 0 + V 1.2429 + + 1 + NaN NaN 93483.5 NaN 19447 4285 23727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23736 94.053 NaN 982530 35 0 210120 0.327 + 26863 SYIPLFPQL 9 54 539.3024463443785 1076.590339755557 2 539.3025512695312 MULTI HCD FTMS 0 0 0 23735 303530.625 0.5951282224256026 5 -0.11374664306640625 1 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 60.07390631473393 0.0174780869009295 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 69.006 0 0 6.4097 6.4097 91.919 0 0 0 9.999795900778224 60.054038513707084 9.999795900778224 21.916017252750578 0 2.3807196863200843 1.3979400086720375 0.3807196863200844 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}[QP]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PY[{I|L}P][KP] 6.4097;4.374;3.3856 +;-;- + 174 NaN NaN 233859.6 NaN 19448 4286 23735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23737 94.058 NaN 306530 35 0 17941 0.261 -1 RVLPCGKKKVW 11 76 457.6082332782322 1369.8028704348967 3 457.60858154296875 MULTI HCD FTMS 0 0 0 23735 175711.46875 0.6091838569880823 12 -0.24369049072265625 2 Carbamidomethyl (C) _RVLPC(Carbamidomethyl (C))GKKKVW_ ENST00000418154.1_1_1:64254543-64254969:-|nuORF 1.214830529360525 0.41359283248740725 1 D 1 -1 8.9794 0 0 0.65552 0 0 61.05281634859063 1190.6749605469747 1251.7277768955653 0 0 0 0 0 0.5 0 0 0 D 0.65552 - 17 + NaN NaN 132883.5 NaN 19449 4286 23735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23738 94.061 NaN 314950 35 0 63737 0.261 + 15456 LPDLLIFQM 9 50 553.3017869050049 1104.5890208768096 2 553.30224609375 MULTI HCD FTMS 0 0 0 23735 113445.4296875 0.399554923625407 4 -0.0809326171875 3 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 49.93300154707207 0.03166451819912738 1 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 46.11 0 0 4.1744 4.1744 84.953 0 0 0 0.6201497276602908 33.802652907819635 0.6201497276602908 9.208187539523749 0 1.805462187404089 0 0.3494850021680094 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{I|L}{I|L}[DP]{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 4.1744;3.3408;2.9805 -;-;- 86 NaN NaN 121777.1 NaN 19450 4286 23735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23739 94.064 NaN 277880 35 0 35666 0.261 + 30409 VLPDMFFSF 9 55 559.7652146393319 NaN 0 559.765869140625 PEAK HCD FTMS 0 0 0 23735 81006.6796875 0.5927593622874234 8 -0.17230987548828125 4 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 54.773552608820026 0.03521077087578403 1 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}RYS 6 7 35.865 0 0 3.2093 0 0 165.07458956868692 162.0554140680297 327.13000363671665 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0.3252574989159953 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}RYS 3.2093 - 119 + NaN NaN 141372.8 NaN 19451 4286 23735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23740 94.068 NaN 370350 35 0 51815 0.261 + 29928 VFEEAFFSF 9 47 561.7605864801794 1121.5066200271588 2 561.7789916992188 MULTI HCD FTMS 0 0 0 23735 29263.916015625 0.19044331804376344 9 -0.19515228271484375 5 Unmodified _VFEEAFFSF_ ENSG00000004939|ENST00000262418|SLC4A1;ENSG00000164889|ENST00000413384|SLC4A2;nc|ENSG00000004939|P02730-2|SLC4A1;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant 34.10243960390752 0.09241788333544565 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 4 5 46.762 0 0 4.1696 0 0 575.2569995211026 0 575.2569995211026 0 28.680044431632826 0 0 0 0.805462187404089 0 1.0994850021680094 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 4.1696 + + 287 + NaN NaN 140396.8 NaN 19452 4286 23735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23741 94.071 NaN 56965 35 0 7353.1 0.261 + 20226 NYLNHWNHF 9 34 622.7846848586541 NaN 0 622.785400390625 PEAK HCD FTMS 0 0 0 23735 11005.931640625 0.2994401701212855 1 -0.0226898193359375 6 Unmodified _NYLNHWNHF_ ENSG00000167363|ENST00000300784|FN3K 3.944395688203298 0.27613285122220627 1 {I|L} 1 8 6.9897 0 0 0.56207 0 0 853.3652853893801 274.0833834283813 1127.4486688177615 0 0 0 0 0 0 0 0 0 + {I|L} 0.56207 + + 6 + NaN NaN 92648.2 NaN 19453 4286 23735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23743 94.076 NaN 905910 35 0 80014 0.327 + 11173 IYIWDLNNF 9 90 599.3004589776755 1196.5863650221509 2 599.3006591796875 MULTI HCD FTMS 0 0 0 23742 537681.0625 0.06781611643643964 17 -0.36505889892578125 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 205.7785088242617 1.0412822304099307E-17 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 110.08 0 0 9.1996 9.1996 93.183 0 0 0 5.801484959362256 5.801484959362256 5.801484959362256 9.208187539523749 0 2.6989700043360187 1.5228787452803376 0.9269359821608809 0.6989700043360187 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]VWE{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]VWE{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]VWE{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]VWE{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD[KS]{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]{I|L}W[{M(Oxidation (M))|F}V]N{[QD]|[EN]|[WG]|[KD]|[RS]} 9.1996;8.4301;8.138;7.1647;7.0801;6.3952;6.1031;5.0452;4.2261;4.1028 +;-;-;-;-;-;-;-;-;- + 3440 NaN NaN 219581.7 NaN 19454 4287 23742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23744 94.08 NaN 447200 35 0 57223 0.261 + 4521 EYLDLFGNTF 10 65 609.7881312450564 1217.5617095569128 2 609.7874145507812 MULTI HCD FTMS 0 0 0 23742 272343.59375 0.8260122447025952 -2 0.04814910888671875 2 Unmodified _EYLDLFGNTF_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 147.24064527209634 2.7126949688607576E-07 1 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F} 10 2 + 94.835 0 0 7.7889 7.7889 90.44 0 0 0 19.42008053022313 16.53212513775344 16.53212513775344 9.164539485499262 0 2.4698565171985374 1.3979400086720375 1.9604093769761874 0 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F};[Y{I|L}]ED{I|L}{M(Oxidation (M))|F}GGGT{M(Oxidation (M))|F};[YE]{I|L}D{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F};[YE]{I|L}D{I|L}{M(Oxidation (M))|F}GGGT{M(Oxidation (M))|F};[Y{I|L}]HHTWNT{M(Oxidation (M))|F};[Y{I|L}]HH{M(Oxidation (M))|F}[MN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.7889;7.0362;6.1939;5.4412;2.4241;1.2467 -;-;+;-;-;- + 644 NaN NaN 175426.9 NaN 19455 4287 23742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23745 94.084 NaN 250590 35 0 33420 0.261 + 13474 KYPENFFLL 9 58 585.8133487338092 1169.6121445344183 2 585.813232421875 MULTI HCD FTMS 0 0 0 23742 73324.21875 0.6361996265703753 5 -0.10399627685546875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 18.1463463914782 0.20357593197100715 1 PE{[VA]|[{I|L}G]}{M(Oxidation (M))|F}Y 6 6 25.111 0 0 2.1469 0 0 147.17764190375368 313.0802096002563 460.25785150401 0 0 0 0 0 0 0 0.6694451763165201 0 PE{[VA]|[{I|L}G]}{M(Oxidation (M))|F}Y 2.1469 - 104 + NaN NaN 115396 NaN 19456 4287 23742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23746 94.087 NaN 90144 35 0 7173.1 0.264 + 7097 FRKLLCRFLN 10 52 437.25731856166226 1308.7501262851868 3 437.2572937011719 MULTI HCD FTMS 0 0 0 23742 47130.828125 0.27025637313130885 5 -0.10399627685546875 4 Unmodified _FRKLLCRFLN_ ENST00000333957.8_1_12:22602190-22602310:-|nuORF 0.6976657623105312 0.47161084886498755 1 P 1 10 3.9794 0 0 0.30406 0 0 742.4275687674118 466.24265466861567 1208.6702234360275 0 0 0 0 0 0 0 0 0 P 0.30406 - 2 + NaN NaN 92827.4 NaN 19457 4287 23742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23747 94.091 NaN 123760 35 0 17077 0.261 + 34916 YSITVAFWL 9 54 550.293794001014 1098.573035068828 2 550.2957153320312 MULTI HCD FTMS 0 0 0 23742 63164.35546875 1 0 0 5 Unmodified _YSITVAFWL_ ENSG00000168958|ENST00000304593|MFF;ENST00000490857.5_1_2:228211900-228221830:+|nuORF;nc|ENSG00000168958|Q9GZY8-3|MFF;nc|ENSG00000168958|Q9GZY8-4|MFF;nc|ENSG00000168958|Q9GZY8-5|MFF;nc|ENSG00000168958|Q9GZY8|MFF 20.453626601364224 0.18364154288633264 1 {I|L}[MT] 3 7 19.705 0 0 1.7937 0 0 735.3927257771555 0 735.3927257771555 0 2.464533512094466 0 0 0 0.9247425010840047 0 0 0 {I|L}[MT] 1.7937 - 48 NaN NaN 112740.9 NaN 19458 4287 23742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23749 94.095 NaN 847540 35 0 231790 0.327 + 6108 FPEGLFYEF 9 63 574.7687124378033 NaN 0 574.7686767578125 PEAK HCD FTMS 0 0 0 23748 397530.5625 0.25264443974325357 9 -0.1854400634765625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 68.08070601005525 0.010199203163486428 1 AV{M(Oxidation (M))|F}YE 5 6 54.821 0 0 4.7773 0 0 373.16607538738725 162.05600916080314 535.2220845481904 0 0 0 0 0 2.4247425010840047 0 1.2614393726401687 0 AV{M(Oxidation (M))|F}YE 4.7773 - 68 + NaN NaN 207460.7 NaN 19459 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23750 94.1 NaN 558210 35 0 46362 0.261 + 34491 YPFLLVGDLM 10 63 592.3074092060276 1182.6002654788551 2 592.80224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 74.92900055777586 0.011744908545316337 1 A{I|L}G{I|L}VGD{I|L}{M(Oxidation (M))|F} 9 4 63.167 0 0 5.3414 0 0 279.121873924025 0 279.121873924025 0 47.45358466288572 0 0 0 1.9802046884880937 0 0 0 A{I|L}G{I|L}VGD{I|L}{M(Oxidation (M))|F} 5.3414 - 1362 NaN NaN 170761.8 NaN 19460 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23751 94.103 NaN 355610 35 0 49592 0.261 -1 LKTQPLFSF 9 63 561.8131199348373 1121.6116869364746 2 561.8134155273438 MULTI HCD FTMS 0 0 0 23748 30145.212890625 0.11352457547741028 10 -0.20159149169921875 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LKTQPLFSF_ ENST00000495205.1_1_1:201104793-201114281:-|nuORF 20.453626601364224 0.18364154288633264 1 R{I|L}{I|L}Q{M(Oxidation (M))|F} 5 -1 45.79 0 0 4.0825 0 0 446.21541030097814 0 446.21541030097814 0 14.855224231777555 0 0 0 1.774227503252014 0 0 0 R{I|L}{I|L}Q{M(Oxidation (M))|F} 4.0825 - 178 NaN NaN 140885.8 NaN 19461 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23752 94.107 NaN 84545 35 0 10116 0.261 + 30804 VPVDAGELFWY 11 40 648.3202569680345 1294.625961002869 2 648.3184814453125 MULTI HCD FTMS 0 0 0 23748 37933.89453125 0.10530342718027005 10 -0.20159149169921875 4 Unmodified _VPVDAGELFWY_ REV__ENSG00000105492|ENST00000425629|SIGLEC6;REV__ENST00000489837.1_1_19:52032900-52035046:-|nuORF;REV__ENST00000496422.5_1_19:52032900-52035046:-|nuORF;REV__nc|ENSG00000105492|O43699-2|SIGLEC6;REV__nc|ENSG00000105492|O43699-3|SIGLEC6;REV__nc|ENSG00000105492|O43699-4|SIGLEC6;REV__nc|ENSG00000105492|O43699-5|SIGLEC6;REV__nc|ENSG00000105492|O43699-6|SIGLEC6 5.296884461304476 0.39569033063702824 1 {I|L} 1 -1 13.539 0 0 1.0458 0 0 884.4077125671253 294.10996423892817 1178.5176768060535 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.0458 + + 19 + NaN NaN 97563.3 NaN 19462 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23753 94.11 NaN 137330 35 0 16904 0.262 + 34917 YSITVAFWL 9 51 550.293794001014 1098.573035068828 2 550.2933349609375 MULTI HCD FTMS 0 0 0 23748 12157.3232421875 0.1924712625018746 1 -0.02602386474609375 5 Unmodified _YSITVAFWL_ ENSG00000168958|ENST00000304593|MFF;ENST00000490857.5_1_2:228211900-228221830:+|nuORF;nc|ENSG00000168958|Q9GZY8-3|MFF;nc|ENSG00000168958|Q9GZY8-4|MFF;nc|ENSG00000168958|Q9GZY8-5|MFF;nc|ENSG00000168958|Q9GZY8|MFF 14.838274106304384 0.23215694253501695 1 K[MT] 3 8 19.705 0 0 1.7937 0 0 720.3838088498811 0 720.3838088498811 0 1.1438490691768557 0 0 0 0.9247425010840047 0 0 0 K[MT] 1.7937 - 44 + NaN NaN 100748.7 NaN 19463 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23754 94.113 NaN 95749 35 0 10701 0.261 + 15647 LPEFVEPFL 9 39 545.7945672882134 NaN 0 545.7940673828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 15.847184025352803 0.21527282152051216 1 EP 2 7 19.464 0 0 1.7864 0 0 585.3167475788763 275.1390474908813 860.4557950697576 0 0 0 0 0 1 0 0 0 + EP 1.7864 + + 10 + NaN NaN 96065.5 NaN 19464 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23755 94.117 NaN 27222 35 0 4001.3 0.261 -1 EFIMSKKKKK 10 24 641.882215237175 1281.74987754115 2 641.8825073242188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _EFIM(Oxidation (M))SKKKKK_ ENST00000371564.7_1_20:50004293-50004545:-|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91947.2 NaN 19465 4288 23748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23757 94.121 NaN 233690 35 0 41118 0.326 + 6609 FPLPTASSPFL 11 49 588.818537838626 1175.6225227440518 2 588.81884765625 MULTI HCD FTMS 0 0 0 23756 119606.2109375 0.21236146480965085 12 -0.23779296875 1 Unmodified _FPLPTASSPFL_ ENST00000311481.10_1_11:66043945-66044302:+|nuORF 24.020572477871973 0.2477903762158293 1 S{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 5 7 47.691 0 0 4.0566 0 0 566.3217640607437 0 566.3217640607437 0 28.738350322034236 0 0 0 0.8494850021680094 0 0.4247425010840047 0 S{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 4.0566 - 73 NaN NaN 123267.6 NaN 19466 4289 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23758 94.126 NaN 152350 35 0 20112 0.261 -1 0 47 585.7595504324721 1169.5045479317441 2 585.760009765625 MULTI HCD FTMS 0 0 0 23756 113150.9765625 0.23634934086727344 32 -0.7283554077148438 2 NaN NaN 1 {M(Oxidation (M))|F}{[ET]|[MV]}EPE 6 -1 30.01 0 0 2.5661 0 0 419.17939955879064 0 419.17939955879064 0 14.436974992327123 0 0 0 0.3807196863200844 0 0.3807196863200844 0 {M(Oxidation (M))|F}{[ET]|[MV]}EPE 2.5661 - 96 NaN NaN 97579.8 NaN 19467 4289 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23759 94.129 NaN 97706 35 0 11617 0.262 + 12009 KGPRQRTT 8 50 472.2744457077623 NaN 0 472.2748718261719 PEAK HCD FTMS 0 0 0 23756 38513.015625 0.15004961104079576 10 -0.1825714111328125 3 Unmodified _KGPRQRTT_ REV__ENSG00000129691|ENST00000343823|ASH2L;REV__ENST00000524263.5_1_8:37968258-37975025:+|nuORF;REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L;REV__nc|ENSG00000129691|Q9UBL3-3|ASH2L 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102493.1 NaN 19468 4289 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23761 94.134 NaN 718600 35 0 40634 0.327 + 16307 LQVKMYFRRI 10 108 451.93248683120106 1352.7756310938032 3 451.93280029296875 MULTI HCD FTMS 0 0 0 23760 510740.71875 0.7112839343524875 1 -0.03281402587890625 1 Unmodified _LQVKMYFRRI_ ENSG00000184995|ENST00000448696|IFNE 1.9063754702782614 0.46521295622613185 1 N{[HG]|PP}N 4 10 14.526 0 0 1.0738 0 0 912.5137806623062 0 912.5137806623062 0 0.4330502818412185 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.0738 - 53 NaN NaN 190156.7 NaN 19469 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23762 94.139 NaN 1494700 35 0 236620 0.261 + 1292 AYNDNWFITF 10 77 645.7924385314823 1289.5703241297645 2 645.7932739257812 MULTI HCD FTMS 0 0 0 23760 686438.25 0.06629206109886875 -10 0.166259765625 2 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 114.4966697963812 4.563610280778346E-05 1 NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6 4 81.701 0 0 6.3355 0 0 463.1699391095719 0 463.1699391095719 0 53.82576888900239 0 0 0 2.3807196863200843 0 0 2.024227503252014 + NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6.3355 + + 561 NaN NaN 305650.5 NaN 19470 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23763 94.142 NaN 111960 35 0 6923.8 0.261 + 15275 LPAALQRKTGR 11 71 605.8718682331544 1209.7291835331087 2 605.8721923828125 MULTI HCD FTMS 0 0 0 23760 168961.1875 0.7774499234485984 1 -0.03281402587890625 3 Unmodified _LPAALQRKTGR_ REV__ENST00000367519.8_2_6:146056790-146056913:-|nuORF 4.897010918128616 0.3974440401582579 1 D 1 -1 10.797 0 0 0.89251 0 0 105.08071156145827 986.5760457871205 1091.6567573485788 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.89251 - 37 + NaN NaN 96566 NaN 19471 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23764 94.146 NaN 101350 35 0 10444 0.263 + 10767 ISGLNRRQ 8 46 472.2744457077623 NaN 0 472.2829284667969 PEAK HCD FTMS 0 0 0 23760 50587.9609375 0.19709450789128757 11 -0.22498321533203125 4 Unmodified _ISGLNRRQ_ REV__ENSG00000140575|ENST00000268182|IQGAP1 2.302733041254933 0.38822285293237185 1 V 1 -1 1.1092 0 0 0.11769 0 0 484.2620128981434 356.17267786197505 840.4346907601184 0 0 0 0 0 0 0 0 0 V 0.11769 - 1 + NaN NaN 90871.3 NaN 19472 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23765 94.149 NaN 78613 35 0 9537.8 0.261 + 4874 FAFDEIVAL 9 40 512.7710785130541 1023.5276040929083 2 512.7700805664062 MULTI HCD FTMS 0 0 0 23760 50339.1796875 0.09025632602446589 20 -0.4218597412109375 5 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 16.942295170755138 0.21397866736869717 1 VA{I|L} 3 6 36.198 0 0 3.5366 0 0 722.3264027326187 0 722.3264027326187 0 29.20818753952375 0 0 0 1 0 0 0 + VA{I|L} 3.5366 + + 26 NaN NaN 98828.2 NaN 19473 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23766 94.152 NaN 97294 35 0 8299.5 0.261 -1 MAFDHYLAIC 10 36 620.7783392739902 1239.5421256147804 2 620.7783203125 MULTI HCD FTMS 0 0 0 23760 40496.16015625 0.6733157926424572 1 -0.03281402587890625 6 Carbamidomethyl (C) _MAFDHYLAIC(Carbamidomethyl (C))_ ENSG00000196171|ENST00000359610|OR6K2 4.3292370932331545 0.45238836448149167 1 S{I|L}AV 4 -1 18.928 0 0 1.527 0 0 203.02047141731788 663.2766817682249 866.2971531855428 0 0 0 0 0 0 0 0 0 S{I|L}AV 1.527 - 54 + NaN NaN 106534.8 NaN 19474 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23767 94.156 NaN 149520 35 0 15763 0.262 + -1 VRRKMELP 8 40 522.8020052136976 1043.5894574941951 2 522.8023071289062 MULTI HCD FTMS 0 0 0 23760 21556.671875 0.4589666449790652 1 -0.03281402587890625 7 Oxidation (M) _VRRKM(Oxidation (M))ELP_ REV__ENSG00000076344|ENST00000397770|RGS11;REV__ENST00000477143.5_1_16:319270-321397:-|nuORF;REV__nc|ENSG00000076344|O94810-2|RGS11;REV__nc|ENSG00000076344|O94810-3|RGS11;REV__RGS11|p.A421V|1|0.49|ENSG00000076344|chr16:269530-269530|G/A|missense_variant 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4838 0 0 878.5108727547405 0 878.5108727547405 0 3.4948500216800937 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4838 + + 5 + NaN NaN 115615.4 NaN 19475 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23768 94.159 NaN 184880 35 0 34816 0.261 + 26852 SYILWALYA 9 47 550.293794001014 1098.573035068828 2 550.2941284179688 MULTI HCD FTMS 0 0 0 23760 23514.974609375 0.37228234872132626 3 -0.07849884033203125 8 Unmodified _SYILWALYA_ REV__ENSG00000183307|ENST00000331437|TMEM121B 12.531546534597751 0.2520865569484384 1 VN 2 -1 18.711 0 0 1.7032 0 0 150.07640402587998 732.3697789989351 882.4461830248151 0 0 0 0 0 0.4247425010840047 0 0 0.3494850021680094 VN 1.7032 - 94 + NaN NaN 121670.1 NaN 19476 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23769 94.162 NaN 60627 35 0 4538.6 0.261 -1 IMFLIDFYQ 9 41 603.2982279981225 1204.5819030630448 2 603.2979736328125 MULTI HCD FTMS 0 0 0 23760 18303.962890625 0.18970380501142317 -12 0.18581390380859375 9 Oxidation (M) _IM(Oxidation (M))FLIDFYQ_ ENST00000274496.9_1_5:143539608-143539680:-|nuORF 8.155526934196011 0.2891920862272901 1 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6 -1 38.638 0 0 3.2076 0 0 0 469.13547693424067 469.13547693424067 38.63773646941111 0 0 0 0 0.28872548999643577 0 0 0 YP{M(Oxidation (M))|F}{I|L}{I|L}V 3.2076 - 21 + NaN NaN 94163.3 NaN 19477 4290 23760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23771 94.167 NaN 415150 35 0 65831 0.327 + 7151 FSFLCMFFI 9 63 577.7738662530079 1153.5331795728157 2 577.7740478515625 MULTI HCD FTMS 0 0 0 23770 50898.91015625 0.4955894847157134 2 -0.045684814453125 1 Unmodified _FSFLCMFFI_ REV__ENSG00000204267|ENST00000374897|TAP2;REV__nc|ENSG00000204267|Q03519-2|TAP2 42.09456458481378 0.05572955244001856 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 -1 36.67 0 0 3.1789 0 0 615.2125721662125 0 615.2125721662125 0 13.482587709797329 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.1789 - 147 NaN NaN 152346.3 NaN 19478 4291 23770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23772 94.172 NaN 122140 35 0 34195 0.263 + -1 DERCNRSLRP 10 41 434.8822917577709 NaN 0 434.88232421875 PEAK HCD FTMS 0 0 0 23770 82098.5703125 0.774689987388068 8 -0.1369476318359375 2 Carbamidomethyl (C) _DERC(Carbamidomethyl (C))NRSLRP_ REV__nc|ENSG00000179362|Q86SG4-2|HMGN2P46;REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46;REV__nc|ENSG00000179362|Q86SG4|HMGN2P46 0.776531954647913 0.3395196853010637 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104439.6 NaN 19479 4291 23770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23773 94.175 NaN 259930 35 0 26679 0.261 + 7669 FYLDQVALSW 10 53 621.3137124626409 1240.6128719920816 2 621.816162109375 MULTI HCD FTMS 0 0 0 23770 42228.38671875 0.5143943299349245 -2 0.045623779296875 3 Unmodified _FYLDQVALSW_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 47.7319792270244 0.08603782309361356 1 [YN]VVV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW 10 6 + 72.452 0 0 5.84 5.84 84.093 0 0 0 2.798859261803983 2.798859261803983 2.798859261803983 2.798859261803983 0 2.5 1.3979400086720375 0 0.3807196863200844 [YN]VVV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YQ]{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YN]{I|L}[{I|L}A]{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YQ]V[{I|L}A]{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[{M(Oxidation (M))|F}D]|MM}[{I|L}A]VSW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[QN]|[E{I|L}]|[KN]}H[RP]W;{[CT]|[{M(Oxidation (M))|F}G]}S[R{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]}{I|L}S[VS];[YQ][R{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]}{I|L}S[VS] 5.84;5.6144;5.5811;5.4186;5.1944;3.9072;3.7273;2.823;1.9239;1.7969 -;-;-;-;-;-;-;-;-;- 218 NaN NaN 116700.8 NaN 19480 4291 23770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23775 94.18 NaN 386660 35 0 19320 0.327 -1 0 83 457.6082332782322 1369.8028704348967 3 457.6082763671875 MULTI HCD FTMS 0 0 0 23774 211764.203125 0.7341770855904659 18 -0.37610626220703125 1 NaN NaN 1 D 1 -1 8.2268 0 0 0.60058 0 0 61.051611875510226 1190.675955177096 1251.7275670526062 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.60058 - 18 + NaN NaN 143088 NaN 19481 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23776 94.184 NaN 587440 35 0 75045 0.261 + 31958 VYPGLAVFF 9 48 506.77887089011085 1011.5431888470217 2 506.7793273925781 MULTI HCD FTMS 0 0 0 23774 297843.8125 0.18720797251628046 -8 0.1588897705078125 2 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 67.41302359171755 0.009925318700911543 1 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 51.186 0 0 5.0602 0 0 529.2899292553539 0 529.2899292553539 0 25.969100130080562 0 0 0 1.9247425010840047 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0602 + + 72 NaN NaN 178315.9 NaN 19482 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23777 94.188 NaN 416940 35 0 85251 0.261 + 26864 SYIPLFPQL 9 46 539.3024463443785 1076.590339755557 2 539.3026123046875 MULTI HCD FTMS 0 0 0 23774 220849.109375 0.4330157389773148 11 -0.23485565185546875 3 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 32.78568957990786 0.09846250359632436 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 35.608 0 0 3.3075 3.3075 87.355 0 0 0 5.6424927368726046 31.00379364601566 5.6424927368726046 21.665090889956677 0 1.8494850021680094 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P][QP]{M(Oxidation (M))|F}{I|L} 3.3075;1.2951 +;- + 97 NaN NaN 138531 NaN 19483 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23778 94.191 NaN 297740 35 0 32067 0.261 + 31551 VYGTIFLTF 9 65 530.7893495108823 1059.5641460885645 2 530.7894287109375 MULTI HCD FTMS 0 0 0 23774 125504.84375 0.6372876649291093 3 -0.0684661865234375 4 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 97.07464715276575 0.004340583992084827 1 TA{I|L}T{M(Oxidation (M))|F} 5 5 62.792 0 0 5.9262 0 0 508.2686106465922 0 508.2686106465922 0 32.929286283499195 0 0 0 1.774227503252014 0 1.1861818737241734 0 TA{I|L}T{M(Oxidation (M))|F} 5.9262 - 445 NaN NaN 115897.6 NaN 19484 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23779 94.195 NaN 73740 35 0 5176.5 0.261 -1 TFSHHRACLL 10 47 621.3137124626409 1240.6128719920816 2 620.3062744140625 MULTI HCD FTMS 0 0 0 23774 67823.0859375 0.7020523739899464 -2 0.04575347900390625 5 Carbamidomethyl (C) _TFSHHRAC(Carbamidomethyl (C))LL_ ENSG00000006534|ENST00000342456|ALDH3B1;nc|ENSG00000006534|P43353-2|ALDH3B1 3.2813086475875832 0.45793521633868084 1 QD 2 -1 6.4537 0 0 0.5202 0 0 285.2052925016504 709.2951754205686 994.5004679222191 0 0 0 0 0 0 0 0 0 QD 0.5202 - 9 + NaN NaN 99598.7 NaN 19485 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23780 94.198 NaN 258130 35 0 67569 0.261 + 31156 VTYFLPEVM 9 57 549.7809919684485 1097.5474310036968 2 550.283203125 MULTI HCD FTMS 0 0 0 23774 57679.71875 0.58720381536725 -4 0.08458709716796875 6 Unmodified _VTYFLPEVM_ REV__ENSG00000231192|ENST00000641874|OR5H1;REV__ENSG00000233412|ENST00000641450|OR5H15 10.823927491677226 0.26684000660059787 1 VEVM 4 -1 36.414 0 0 3.3178 0 0 621.3172453682572 0 621.3172453682572 0 25.956837818197798 0 0 0 0.9247425010840047 0 0 0 VEVM 3.3178 - 83 NaN NaN 134483 NaN 19486 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23781 94.201 NaN 168140 35 0 33253 0.261 + 30410 VLPDMFFSF 9 45 559.7652146393319 NaN 0 559.7642211914062 PEAK HCD FTMS 0 0 0 23774 46001.7421875 0.33661376405457877 14 -0.29149627685546875 7 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 46.020951573049366 0.05896589607441476 1 S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 29.693 0 0 2.657 0 0 165.07517875154525 568.2448663659337 733.3200451174789 0 0 0 0 0 1.3494850021680094 0 0 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.657 - 58 + NaN NaN 108952.3 NaN 19487 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23782 94.205 NaN 90712 35 0 20855 0.261 + -1 WRCCCCLS 8 33 601.2249795587082 NaN 0 601.2245483398438 PEAK HCD FTMS 0 0 0 23774 10014.76953125 0.13537582779568627 11 -0.23485565185546875 8 4 Carbamidomethyl (C) _WRC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))LS_ REV__ENSG00000011021|ENST00000346436|CLCN6;REV__nc|ENSG00000011021|P51797-2|CLCN6;REV__nc|ENSG00000011021|P51797-3|CLCN6;REV__nc|ENSG00000011021|P51797-4|CLCN6;REV__nc|ENSG00000011021|P51797-5|CLCN6;REV__nc|ENSG00000011021|P51797-6|CLCN6 0.6903765706972694 0.38822285293237185 1 G 1 -1 3.9794 0 0 0.3315 0 0 750.2596076996446 390.1421297662719 1140.4017374659165 0 0 0 0 0 0 0 0 0 G 0.3315 - 15 + NaN NaN 96928.9 NaN 19488 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23783 94.208 NaN 79116 35 0 11780 0.261 -1 VYTQCWYVK 9 32 623.7986450195312 NaN 0 623.7986450195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _VYTQC(Carbamidomethyl (C))WYVK_ ENST00000395738.2_1_22:50921135-50921831:+|nuORF 1.6526216038709556 0.28723846860855273 1 {I|L} 1 -1 6.9897 0 0 0.5625 0 0 129.11593209292215 997.395307953906 1126.511240046828 0 0 0 0 0 0 0 0 0 {I|L} 0.5625 - 3 + NaN NaN 95092.3 NaN 19489 4292 23774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23785 94.213 NaN 269670 35 0 40247 0.327 + 15457 LPDLLIFQM 9 65 553.3017869050049 1104.5890208768096 2 553.3018798828125 MULTI HCD FTMS 0 0 0 23784 95721.7109375 0.3371319673985972 11 -0.2283172607421875 1 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 49.93300154707207 0.03166451819912738 1 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 45.573 0 0 4.1258 4.1258 82.519 0 0 0 2.9096861040166857 1.6552142918489068 1.6552142918489068 5.46241115504975 0 1.7614393726401687 0 0.28872548999643577 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};MT{I|L}{I|L}[WD]{I|L}[{I|L}T];MT{[RE]|[WV]}E{I|L}{I|L}[{I|L}T];MT{I|L}{I|L}E{[RE]|[WV]}[{I|L}T];[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};MT{I|L}[WD]{I|L}{I|L}[{I|L}T] 4.1258;3.6313;3.5874;3.5158;3.2922;3.2711 -;-;-;-;-;- 180 NaN NaN 124264.5 NaN 19490 4293 23784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23786 94.217 NaN 116330 35 0 11828 0.261 + 20592 PEKRAHVRRHR 11 51 481.28362410383244 1440.8290429116973 3 481.2837829589844 MULTI HCD FTMS 0 0 0 23784 43422.68359375 0.4160164628076756 -9 0.1916351318359375 2 Unmodified _PEKRAHVRRHR_ REV__ENSG00000167840|ENST00000250076|ZNF232;REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF;REV__nc|ENSG00000167840|Q9UNY5-2|ZNF232 0.40826533853263924 0.41713015341995335 1 V 1 -1 2.4743 0 0 0.17172 0 0 1026.5827550110112 312.14948450260005 1338.7322395136111 0 0 0 0 0 0 0 0 0 V 0.17172 + + 4 + NaN NaN 99949.4 NaN 19491 4293 23784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23787 94.221 NaN 98628 35 0 15607 0.261 + -1 PSQTLCPSRLI 11 48 636.3426892136545 1270.6708254941088 2 636.3422241210938 MULTI HCD FTMS 0 0 0 23784 24361.138671875 0.22724480736202382 9 -0.17261505126953125 3 Carbamidomethyl (C) _PSQTLC(Carbamidomethyl (C))PSRLI_ REV__ENSG00000283439|ENST00000636696|SPEM3 10.799506525563784 0.36298595732910816 1 {I|L}{I|L} 2 -1 25.217 0 0 1.9845 0 0 1026.4907704084 0 1026.4907704084 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 1.9845 + + 9 NaN NaN 104138.8 NaN 19492 4293 23784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23789 94.226 NaN 912220 35 0 135400 0.327 + 34492 YPFLLVGDLM 10 56 592.3074092060276 1182.6002654788551 2 592.3074340820312 MULTI HCD FTMS 0 0 0 23788 513372.34375 0.6891253708766258 -12 0.22284698486328125 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 100.37149154755038 0.000206371386929769 1 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 8 6 82.248 0 0 6.9549 0 0 278.12971694160314 0 278.12971694160314 0 71.27935355188811 0 0 0 2.2614393726401687 0 1.6549471895720984 0 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.9549 - 370 NaN NaN 215622.8 NaN 19493 4294 23788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23790 94.23 NaN 533660 35 0 138130 0.261 + 6109 FPEGLFYEF 9 52 574.7687124378033 NaN 0 574.7687377929688 PEAK HCD FTMS 0 0 0 23788 367785.0625 0.23374014434739213 15 -0.31093597412109375 2 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 58.678817012210395 0.027870599607392636 1 EY{M(Oxidation (M))|F} 3 6 45.49 0 0 3.9642 0 0 165.07899672675939 540.2463882265852 705.3253849533446 0 0 0 0 0 2 0 1.2302046884880937 0 EY{M(Oxidation (M))|F} 3.9642 - 52 NaN NaN 165074.6 NaN 19494 4294 23788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23791 94.234 NaN 461000 35 0 40936 0.261 + 11174 IYIWDLNNF 9 69 599.3004589776755 1196.5863650221509 2 599.30078125 MULTI HCD FTMS 0 0 0 23788 300970.28125 0.03796048821629827 24 -0.538848876953125 3 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 134.295615338601 0.00034446139420701925 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 105.46 0 0 8.813 8.813 91.775 0 0 0 11.289850105233299 11.289850105233299 11.289850105233299 9.018637558036673 0 2.6549471895720984 1.6989700043360187 0.3252574989159953 0.7059771852360797 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}DW{I|L}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}GG{I|L}DW{I|L}K{M(Oxidation (M))|F} 8.813;8.0593;8.0435;7.7253;7.2898;6.9716;6.6876;5.9339;1.3192;0.29437 +;-;-;-;-;-;-;-;-;- + 919 NaN NaN 167803.5 NaN 19495 4294 23788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23792 94.237 NaN 241640 35 0 51198 0.261 + 4522 EYLDLFGNTF 10 58 609.7881312450564 1217.5617095569128 2 609.7877807617188 MULTI HCD FTMS 0 0 0 23788 105944.4375 0.3213271934476292 5 -0.0783843994140625 4 Unmodified _EYLDLFGNTF_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 71.70789743142352 0.01556163018108538 1 D{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F} 7 3 42.8 0 0 3.5152 0 0 405.193558777419 0 405.193558777419 0 23.670460127586853 0 0 0 1.7302046884880937 0 1.524227503252014 0 + D{I|L}{M(Oxidation (M))|F}GNT{M(Oxidation (M))|F} 3.5152 + + 136 + NaN NaN 122892.8 NaN 19496 4294 23788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23793 94.24 NaN 140840 35 0 18239 0.264 -1 0 39 405.1187639801621 808.2229750271242 2 405.1188049316406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 {[C(Carbamidomethyl (C))E]|[WC]}P 3 -1 3.2218 0 0 0.39863 0 0 0 419.06523511917425 419.06523511917425 2.7372346838553714 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))E]|[WC]}P 0.39863 - 6 NaN NaN 104442.4 NaN 19497 4294 23788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23794 94.244 NaN 193680 35 0 17437 0.261 + 13475 KYPENFFLL 9 63 585.8133937022669 1169.6122344713337 2 585.81396484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 22.65808497894818 0.16459551161911185 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 32.211 0 0 2.754 0 0 631.2951527326187 0 631.2951527326187 0 11.269184659718547 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.754 + + 289 NaN NaN 116824.4 NaN 19498 4294 23788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23796 94.248 NaN 426290 35 0 48287 0.327 + 7145 FSETDAFTCFF 11 73 438.85019352402225 1313.5287511722668 3 438.8504638671875 MULTI HCD FTMS 0 0 0 23795 123542.5546875 0.6409501195774104 -5 0.11421966552734375 1 Unmodified _FSETDAFTCFF_ REV__ENSG00000167825|ENST00000301532|OR5I1 4.715918219556657 0.3982382512160552 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W 3 -1 23.952 0 0 1.8235 0 0 0 890.3241057467386 890.3241057467386 7.498774732165998 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W 1.8235 - 39 NaN NaN 152291.7 NaN 19499 4295 23795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23797 94.253 NaN 275030 35 0 97699 0.261 + 28344 TPCRQWTAC 9 39 533.2344101053567 1064.4542672775133 2 533.2345581054688 MULTI HCD FTMS 0 0 0 23795 126018.2109375 0.5570480814835838 -5 0.11421966552734375 2 Unmodified _TPCRQWTAC_ REV__nc|ENSG00000134222|Q6PGN9-3|PSRC1 1.4819007175156935 0.3397831423917744 1 M 1 -1 5.4846 0 0 0.51525 0 0 61.01700455318514 869.3644625313169 930.3814670845021 0 0 0 0 0 0 0 0 0 M 0.51525 - 2 + NaN NaN 123781.6 NaN 19500 4295 23795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23798 94.256 NaN 121600 35 0 13371 0.261 + 6088 FPEEVIATIF 10 37 583.3103729426534 1164.6061929521068 2 583.3117065429688 MULTI HCD FTMS 0 0 0 23795 36353.6953125 0.0795675125874473 -25 0.46416473388671875 3 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 34.40172386719151 0.19398797222092762 1 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 54.68 0 0 4.6952 0 0 601.2763539044937 0 601.2763539044937 0 44.195925227640984 0 0 0 1.9247425010840047 0 0.3494850021680094 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 4.6952 + + 63 NaN NaN 89237.7 NaN 19501 4295 23795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23799 94.26 NaN 95360 35 0 12700 0.262 -1 WLNKLMKLLQR 11 47 486.9588820977935 NaN 0 486.9590759277344 PEAK HCD FTMS 0 0 0 23795 51183.50390625 1 0 0 4 Oxidation (M) _WLNKLM(Oxidation (M))KLLQR_ ENSG00000068878|ENST00000404125|PSME4 0.4545168274142398 0.3408308101233591 1 N 1 -1 1.5938 0 0 0.16399 0 0 557.7355304535964 297.1107576959594 854.8462881495559 0 0 0 0 0 0 0 0 0 N 0.16399 + + 2 + NaN NaN 92308.1 NaN 19502 4295 23795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23801 94.265 NaN 9703600 35 0 1550900 0.326 + 1293 AYNDNWFITF 10 105 645.7924385314823 1289.5703241297645 2 645.792724609375 MULTI HCD FTMS 0 0 0 23800 6256660.5 0.6042304899834453 -4 0.08463287353515625 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 200.32105748857333 3.4553563873582277E-23 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 10 0 + 117.69 0 0 9.1261 9.1261 91.91 0 0 0 8.318787619909784 8.318787619909784 8.318787619909784 8.318787619909784 0 2.9604093769761874 1.3010299956639813 0.5994850021680094 2.048455006504028 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};YANDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};YAGGDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};YANDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};YAGGDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 9.1261;8.481;8.4154;8.4154;7.7704;7.7087;7.3154;6.998;6.998;6.6075 +;-;-;-;-;-;-;-;-;- + 3472 NaN NaN 658412.4 NaN 19503 4296 23800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23802 94.269 NaN 754130 35 0 41074 0.264 + 7073 FQVKLLYRMR 10 100 451.93248683120106 1352.7756310938032 3 451.9326171875 MULTI HCD FTMS 0 0 0 23800 653777.3125 0.910484090956172 7 -0.1502227783203125 2 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 3.3196427980023873 0.4577323075863651 1 N{[HG]|PP}N 4 -1 16.287 0 0 1.2039 0 0 912.513888684105 0 912.513888684105 0 5.801981352645811 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.2039 - 65 NaN NaN 204745.3 NaN 19504 4296 23800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23803 94.273 NaN 102060 35 0 12165 0.261 + 6089 FPEEVIATIF 10 38 583.3103729426534 1164.6061929521068 2 583.3095703125 MULTI HCD FTMS 0 0 0 23800 22621.01171875 0.049510720140011455 -24 0.43476104736328125 3 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 34.40172386719151 0.19398797222092762 1 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 59.196 0 0 5.0829 0 0 601.274217674025 0 601.274217674025 0 51.43171538435208 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 5.0829 + + 23 NaN NaN 102173.6 NaN 19505 4296 23800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23804 94.276 NaN 108940 35 0 10882 0.261 + 35565 YYHTTSEYI 9 45 588.7647237683275 1175.5148946034549 2 588.764892578125 MULTI HCD FTMS 0 0 0 23800 9628.87109375 0.263956694239266 2 -0.03237152099609375 4 Unmodified _YYHTTSEYI_ REV__ENSG00000008118|ENST00000361322|CAMK1G;REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G 12.531546534597751 0.2520865569484384 1 YY{M(Oxidation (M))|F} 3 -1 31.254 0 0 2.6588 0 0 0 699.3012789361936 699.3012789361936 10.553396606206888 0 0 0 0 0.3807196863200844 2 0 0 YY{M(Oxidation (M))|F} 2.6588 - 40 + NaN NaN 97705.2 NaN 19506 4296 23800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23806 94.281 NaN 876500 35 0 90617 0.327 -1 FSMEKDHCEDS 11 87 448.50100546087566 1342.481186982827 3 448.50128173828125 MULTI HCD FTMS 0 0 0 23805 111420.90625 0.54788221820546 -3 0.05522918701171875 1 Oxidation (M) _FSM(Oxidation (M))EKDHCEDS_ nc|ENSG00000143552|Q5VU65-2|NUP210L 6.234356020891411 0.3915788988406848 1 SS 2 -1 16.498 0 0 1.2289 0 0 0 1165.382917379244 1165.382917379244 3.0031220908418277 0 0 0 0 0 0 0.3054621874040891 0 SS 1.2289 - 48 + NaN NaN 214254.8 NaN 19507 4297 23805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23807 94.285 NaN 75832 35 0 5227.2 0.261 + 14867 LKKMFVKAFV 10 56 605.8718682331544 1209.7291835331087 2 605.8720092773438 MULTI HCD FTMS 0 0 0 23805 53454.23828125 0.24596177426701 8 -0.1829833984375 2 Unmodified _LKKMFVKAFV_ REV__ENST00000481528.1_1_1:52926763-52927313:-|nuORF 1.6526216038709556 0.46655611578153744 1 {I|L} 1 -1 4.6041 0 0 0.38059 0 0 703.4830725485368 390.14121423892817 1093.624286787465 0 0 0 0 0 0 0 0 0 {I|L} 0.38059 + + 8 + NaN NaN 91486.9 NaN 19508 4297 23805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23808 94.289 NaN 343090 35 0 40106 0.261 -1 FDQQNCTLTF 10 59 637.2800082061343 1272.5454634790685 2 637.7821044921875 MULTI HCD FTMS 0 0 0 23805 39007.296875 0.8575652536691113 -3 0.05522918701171875 3 Carbamidomethyl (C) _FDQQNC(Carbamidomethyl (C))TLTF_ ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-2|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E 26.268140514670165 0.2654086933305545 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDWE{I|L}T{M(Oxidation (M))|F} 10 -1 + 73.082 0 0 5.743 5.743 92.208 0 0 0 22.649087242336776 42.587418566968154 22.649087242336776 46.18562527100117 0 2.322682509756042 1.3979400086720375 1.274227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDWE{I|L}T{M(Oxidation (M))|F};[NP]HDDWE{I|L}T{M(Oxidation (M))|F} 5.743;2.1136 -;- 130 NaN NaN 135019.7 NaN 19509 4297 23805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23809 94.292 NaN 91799 35 0 9389.3 0.261 + 35487 YYFIAAGNEE 10 39 588.7647237683275 1175.5148946034549 2 588.8182983398438 MULTI HCD FTMS 0 0 0 23805 15678.2646484375 0.4297890030635151 3 -0.04886627197265625 4 Unmodified _YYFIAAGNEE_ ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23 6.723162845929126 0.4397169348982109 1 YY{[{M(Oxidation (M))|F}H]|[RQ]}[CS]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 6 + 25.945 0 0 2.2071 2.2071 81.895 0 0 0 14.250058921256825 1.5156356179112471 1.5156356179112471 7.014224667125717 0 0.7302046884880937 2 0 0 YY{[{M(Oxidation (M))|F}H]|[RQ]}[CS]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YYWW[QA]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YY{[QD]|[EN]|[WG]|[KD]|[RS]}E[QA]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}C(Carbamidomethyl (C))[KT]{[ET]|[MV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.2071;1.6104;1.3497;0.11448 -;-;-;- 55 + NaN NaN 91058.3 NaN 19510 4297 23805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23811 94.297 NaN 95757 35 0 8875.9 0.326 -1 IMFLIDFYQ 9 39 603.2982279981225 1204.5819030630448 2 603.2984008789062 MULTI HCD FTMS 0 0 0 23810 41457.41015625 0.4296680724034893 -5 0.084259033203125 1 Oxidation (M) _IM(Oxidation (M))FLIDFYQ_ ENST00000274496.9_1_5:143539608-143539680:-|nuORF 17.11289562659939 0.2125047172822487 1 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6 -1 71.885 0 0 5.9677 0 0 0 469.1373385065063 469.1373385065063 62.93305028184122 0 0 0 0 1.25 1.5228787452803376 0 0 YP{M(Oxidation (M))|F}{I|L}{I|L}V 5.9677 - 93 + NaN NaN 95582.2 NaN 19511 4298 23810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23813 94.304 NaN 2170100 35 0 341470 0.327 + 31959 VYPGLAVFF 9 65 506.77887089011085 1011.5431888470217 2 506.7789611816406 MULTI HCD FTMS 0 0 0 23812 1158005.125 0.7278572947178882 -1 0.0070037841796875 1 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 109.15424536547461 0.003080475237576971 1 [YV]PG{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.128 0 0 7.9214 7.9214 92.584 0 0 0 9.244974475172043 50.57582781025921 9.244974475172043 11.020599913279625 0 3.079689690656103 1.5228787452803376 0 0 + + [YV]PG{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]PG{I|L}A{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YV]PG{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V][HV]{I|L}GD{I|L}{I|L};[{M(Oxidation (M))|F}V][HV]{I|L}G{[QN]|[E{I|L}]|[KN]}V 7.9214;6.8319;5.8659;2.8776;1.7426 +;-;-;-;- + 199 NaN NaN 405710.1 NaN 19512 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23814 94.308 NaN 291000 35 0 16794 0.261 -1 0 81 457.6082332782322 1369.8028704348967 3 457.60821533203125 MULTI HCD FTMS 0 0 0 23812 146743.90625 0.5087546045503792 25 -0.6277084350585938 2 NaN NaN 1 D 1 -1 8.8515 0 0 0.64619 0 0 61.05185342359511 1190.674562089669 1251.726415513264 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.64619 - 16 + NaN NaN 124585 NaN 19513 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23815 94.312 NaN 130420 35 0 19912 0.261 + 23872 RSRPLRPSF 9 51 558.3245353993357 1114.6345178654713 2 558.3245849609375 MULTI HCD FTMS 0 0 0 23812 61660.93359375 1 0 0 3 Unmodified _RSRPLRPSF_ ENST00000389561.6_1_12:132551999-132562003:+|nuORF 2.0597508629832335 0.3354026079994024 1 S{M(Oxidation (M))|F} 2 7 18.583 0 0 1.6672 0 0 862.5235387168369 0 862.5235387168369 0 13.098943791441968 0 0 0 0 0 0 0 + S{M(Oxidation (M))|F} 1.6672 + + 47 + NaN NaN 99897.6 NaN 19514 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23816 94.315 NaN 456500 35 0 108950 0.261 + 7152 FSFLCMFFI 9 73 577.7738662530079 1153.5331795728157 2 578.2754516601562 MULTI HCD FTMS 0 0 0 23812 19599.7578125 0.34719390565309743 4 -0.11084747314453125 4 Unmodified _FSFLCMFFI_ REV__ENSG00000204267|ENST00000374897|TAP2;REV__nc|ENSG00000204267|Q03519-2|TAP2 34.10243960390752 0.09241788333544565 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[HQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 -1 + 55.459 0 0 4.8078 4.8078 87.302 0 0 0 15.304644200394094 24.161897232952107 15.304644200394094 11.510234424404686 0 0.8807196863200843 1.3979400086720375 0.7059771852360797 0.2302046884880938 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[HQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGD[HQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[WY][MT]{M(Oxidation (M))|F}{I|L} 4.8078;3.81;0.83325;0.21406 -;-;-;- 434 NaN NaN 152150.4 NaN 19515 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23817 94.318 NaN 154520 35 0 8445.8 0.261 + 37 AALVPFVEQF 10 64 560.8057909994664 NaN 0 560.8057861328125 PEAK HCD FTMS 0 0 0 23812 14893.90234375 0.41793500260823063 5 -0.137054443359375 5 Unmodified _AALVPFVEQF_ REV__nc|ENSG00000170248|Q8WUM4-2|PDCD6IP 17.11289562659939 0.30402175129113823 1 QEV 3 -1 17.307 0 0 1.5458 0 0 165.07443394977003 595.3101900690061 760.3846240187761 0 0 0 0 0 0.6505149978319906 0 0 0 QEV 1.5458 - 54 + NaN NaN 110077.9 NaN 19516 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23818 94.321 NaN 338010 35 0 40333 0.261 + 5051 FDQQNCTLTF 10 62 637.2800082061343 1272.5454634790685 2 637.281005859375 MULTI HCD FTMS 0 0 0 23812 24208.185546875 0.5594368075076686 2 -0.0552215576171875 6 Carbamidomethyl (C) _FDQQNC(Carbamidomethyl (C))TLTF_ ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-2|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E 47.748688679222035 0.08597705450879027 1 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 7 52.563 0 0 4.1305 0 0 560.1874867169937 0 560.1874867169937 0 37.1002345915111 0 0 0 1.4247425010840047 0 0.4247425010840047 0 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4.1305 - 127 NaN NaN 134299.1 NaN 19517 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23819 94.325 NaN 38671 35 0 4171.8 0.262 + 34937 YSLLVKDKK 9 30 547.3325367640977 NaN 0 547.3328857421875 PEAK HCD FTMS 0 0 0 23812 5141.31103515625 0.1926194765576351 1 -0.0257110595703125 7 Unmodified _YSLLVKDKK_ REV__ENSG00000137033|ENST00000682010|IL33;REV__nc|ENSG00000137033|O95760-3|IL33 0.5247636613948944 0.2927039108006614 1 C(Carbamidomethyl (C)) 1 -1 2.2185 0 0 0.20304 0 0 569.4320890537828 360.1571138971313 929.5892029509141 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.20304 - 2 + NaN NaN 91177.2 NaN 19518 4299 23812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23821 94.33 NaN 189700 35 0 17425 0.327 + 31552 VYGTIFLTF 9 52 530.7893495108823 1059.5641460885645 2 530.7894287109375 MULTI HCD FTMS 0 0 0 23820 90856.9375 0.4613527558930172 11 -0.2492828369140625 1 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 32.30548876998284 0.10066689432505688 1 {I|L}T{M(Oxidation (M))|F} 3 6 42.435 0 0 4.0049 0 0 680.3539237758677 0 680.3539237758677 0 31.977437731477423 0 0 0 1.5 0 0.4247425010840047 0 + {I|L}T{M(Oxidation (M))|F} 4.0049 + + 66 + NaN NaN 106628.2 NaN 19519 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23822 94.334 NaN 105660 35 0 13896 0.261 + 7670 FYLDQVALSW 10 38 621.3137124626409 1240.6128719920816 2 621.3134765625 MULTI HCD FTMS 0 0 0 23820 82855.921875 0.7038019164304249 6 -0.14177703857421875 2 Unmodified _FYLDQVALSW_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 37.07464296494664 0.1707926854601146 1 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW 11 3 + 68.487 0 0 5.5204 5.5204 82.612 0 0 0 0 0 0 0.8231982026179736 0 1 0 0.3494850021680094 0 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;[YQ]{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW 5.5204;5.4541 -;- 71 + NaN NaN 111467.4 NaN 19520 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23823 94.338 NaN 366810 35 0 96346 0.262 + -1 DPQVYCVGL 9 49 525.7521797367697 NaN 0 525.7521362304688 PEAK HCD FTMS 0 0 0 23820 64287.30078125 0.98307849629191 -3 0.04886627197265625 3 Carbamidomethyl (C) _DPQVYC(Carbamidomethyl (C))VGL_ REV__ENST00000324103.10_1_14:24619886-24619916:+|nuORF 5.230669730166228 0.26989974671959066 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.66601 0 0 147.0689979467382 752.3298672341102 899.3988651808484 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.66601 - 14 + NaN NaN 145549.8 NaN 19521 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23824 94.341 NaN 162720 35 0 18405 0.261 + 716 AQIPLVLVL 9 40 483.3234961891338 NaN 0 483.3235778808594 PEAK HCD FTMS 0 0 0 23820 41718.1875 0.5458395375715925 12 -0.27547454833984375 4 Unmodified _AQIPLVLVL_ REV__ENSG00000104112|ENST00000220478|SCG3 11.640296217721598 0.23883959125015683 1 {I|L}VR 3 -1 11.682 0 0 1.2111 0 0 132.18080124609645 461.18036829166255 593.361169537759 0 0 0 0 0 0 0 0 0 {I|L}VR 1.2111 - 23 + NaN NaN 122633.2 NaN 19522 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23825 94.344 NaN 285770 35 0 27353 0.261 -1 YLGYPVLQI 9 73 554.3078377963003 1106.6011226594005 2 554.3084716796875 MULTI HCD FTMS 0 0 0 23820 106673.9609375 0.09402921737928961 -15 0.3018646240234375 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YLGYPVLQI_ ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549 28.486842064014134 0.11819662193267319 1 VV{I|L}Q{I|L} 5 -1 46.242 0 0 4.1788 0 0 536.2140370099625 0 536.2140370099625 0 34.815534464597704 0 0 0 1.305462187404089 0 0 0 VV{I|L}Q{I|L} 4.1788 - 133 NaN NaN 131956.7 NaN 19523 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23826 94.348 NaN 131290 35 0 11833 0.261 -1 0 51 585.7595504324721 1169.5045479317441 2 585.7598876953125 MULTI HCD FTMS 0 0 0 23820 43003.8046875 0.08982618799636653 43 -1.00946044921875 6 NaN NaN 1 Y{M(Oxidation (M))|F}E 3 -1 16.911 0 0 1.446 0 0 712.3243885724625 0 712.3243885724625 0 6.453650195120845 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}E 1.446 - 42 NaN NaN 102690.9 NaN 19524 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23827 94.351 NaN 138900 35 0 19570 0.261 + 26865 SYIPLFPQL 9 38 539.3024463443785 1076.590339755557 2 539.3027954101562 MULTI HCD FTMS 0 0 0 23820 52486.296875 0.1029091432237561 19 -0.46762847900390625 7 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 24.020572477871973 0.15282392193088168 1 {M(Oxidation (M))|F}[{I|L}P]{I|L}[MT] 6 6 18.958 0 0 1.7609 0 0 356.2050844403719 0 356.2050844403719 0 18.957509373371625 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}[{I|L}P]{I|L}[MT] 1.7609 - 32 + NaN NaN 97023.4 NaN 19525 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23828 94.354 NaN 48071 35 0 5398.4 0.261 + 11709 KAPTDKSGW 9 30 495.2569411763598 NaN 0 495.2203674316406 PEAK HCD FTMS 0 0 0 23820 8749.05859375 0.5365327059058006 -1 0.0257110595703125 8 Unmodified _KAPTDKSGW_ REV__ENSG00000105523|ENST00000263266|FAM83E 1.4819007175156935 0.28806575819904134 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90687.5 NaN 19526 4300 23820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23830 94.359 NaN 800730 35 0 220500 0.327 + 7385 FVHMTSLSL 9 72 517.770075070777 1033.525597208354 2 517.7700805664062 MULTI HCD FTMS 0 0 0 23829 300176.46875 0.6511956923781136 1 -0.02613067626953125 1 Unmodified _FVHMTSLSL_ REV__ENSG00000214285|ENST00000398023|NPS;REV__NPS|p.W22Lfs*9|1|0.15|ENSG00000214285|chr10:127549540-127549541|-/T|frameshift_variant 15.847184025352803 0.2234401846867398 1 VYPDD{I|L}{I|L} 7 -1 47.708 0 0 4.616 0 0 0 215.10328088931877 215.10328088931877 23.022109972659024 0 0 0 0 0.4247425010840047 2 0 0 VYPDD{I|L}{I|L} 4.616 - 127 + NaN NaN 205314.2 NaN 19527 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23831 94.364 NaN 344180 35 0 71410 0.261 -1 MELGLSWVF 9 52 549.2700404769001 1096.5255280206002 2 549.781494140625 MULTI HCD FTMS 0 0 0 23829 15334.638671875 0.3292274400348142 -4 0.07837677001953125 2 Oxidation (M) _M(Oxidation (M))ELGLSWVF_ nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000211942|P01766|IGHV3-13 21.74664581756881 0.17247014374749275 1 SWV{M(Oxidation (M))|F} 4 -1 39.725 0 0 3.6228 0 0 559.266704820715 0 559.266704820715 0 28.75569708000178 0 0 0 1.3807196863200843 0 0 0 SWV{M(Oxidation (M))|F} 3.6228 + + 100 NaN NaN 144516.1 NaN 19528 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23832 94.367 NaN 324960 35 0 82917 0.261 -1 0 58 520.1361996236108 519.1289231570107 1 520.138671875 MULTI HCD FTMS 0 0 0 23829 145311.609375 0.47138025139825923 -268 6.7051849365234375 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 2.9828 0 0 354.05004850056383 0 354.05004850056383 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.9828 - 2 + NaN NaN 133965.4 NaN 19529 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23833 94.37 NaN 114920 35 0 11079 0.261 + 32760 WRNRQKNKRR 10 45 481.28362410383244 1440.8290429116973 3 481.2835998535156 MULTI HCD FTMS 0 0 0 23829 73845.4765625 0.7074858440646941 -1 0.029510498046875 4 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 1 S 1 10 3.0989 0 0 0.21508 0 0 874.0044712337661 476.77243982486567 1350.7769110586319 0 0 0 0 0 0 0 0 0 S 0.21508 - 1 + NaN NaN 101874.9 NaN 19530 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23834 94.374 NaN 116580 35 0 8491.1 0.261 + 33877 YLLSPSPLL 9 40 501.7972284701969 1001.5799040071938 2 501.7972106933594 MULTI HCD FTMS 0 0 0 23829 41501.6015625 0.503296025933904 1 -0.02613067626953125 5 Unmodified _YLLSPSPLL_ REV__ENST00000459708.1_1_1:85121010-85121631:-|nuORF 12.531546534597751 0.2520865569484384 1 {I|L}T{I|L} 3 -1 36.198 0 0 3.6141 0 0 656.3548879750931 0 656.3548879750931 0 13.420919034428703 0 0 0 1 0 0 0 {I|L}T{I|L} 3.6141 - 38 NaN NaN 104884.8 NaN 19531 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23835 94.377 NaN 109040 35 0 8877.5 0.261 -1 VLPDMFFSF 9 50 559.7652146393319 NaN 0 559.7646484375 PEAK HCD FTMS 0 0 0 23829 20287.13671875 0.1484493657860617 23 -0.5724868774414062 6 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 20.453626601364224 0.18435338882370536 1 MDY[YQ]S 6 -1 14.927 0 0 1.3357 0 0 165.16463230425126 162.05518518619377 327.21981749044505 0 0 0 0 0 0.8807196863200843 0 0 0 MDY[YQ]S 1.3357 - 28 + NaN NaN 104295.4 NaN 19532 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23836 94.38 NaN 101330 35 0 13125 0.261 + 447 ALLIFEPRS 9 42 523.3038330078125 NaN 0 523.3038330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _ALLIFEPRS_ REV__ENSG00000170324|ENST00000374201|FRMPD2;REV__ENST00000486151.5_1_10:49420141-49482610:-|nuORF;REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2;REV__nc|ENSG00000170324|Q68DX3-3|FRMPD2 3.944395688203298 0.27613285122220627 1 ED 2 -1 11.281 0 0 1.081 0 0 357.1915612771266 439.3039644830688 796.4955257601954 0 0 0 0 0 0.3807196863200844 0 0 0 ED 1.081 - 9 + NaN NaN 101785.4 NaN 19533 4301 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23838 94.385 NaN 1111800 35 0 166610 0.327 + 34493 YPFLLVGDLM 10 67 592.3074092060276 1182.6002654788551 2 592.3074340820312 MULTI HCD FTMS 0 0 0 23837 522525.09375 0.7014115649326161 -4 0.08835601806640625 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 125.62461146993168 2.8380270204069364E-05 1 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 8 6 88.855 0 0 7.5135 0 0 278.1296253032415 0 278.1296253032415 0 76.53770597712179 0 0 0 2.2614393726401687 0 2.190614065464281 0 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 7.5135 - 426 NaN NaN 246255.6 NaN 19534 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23839 94.39 NaN 338310 35 0 72278 0.261 + 6110 FPEGLFYEF 9 64 574.7687124378033 NaN 0 574.7684936523438 PEAK HCD FTMS 0 0 0 23837 171282.484375 0.10885595067361507 23 -0.5626220703125 2 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 46.020951573049366 0.05896589607441476 1 EY{M(Oxidation (M))|F} 3 6 40.732 0 0 3.5496 0 0 165.07916457343907 540.2462448230003 705.3254093964395 0 0 0 0 0 2 0 1.055462187404089 0 EY{M(Oxidation (M))|F} 3.5496 - 59 NaN NaN 131914.1 NaN 19535 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23840 94.393 NaN 538890 35 0 38011 0.261 -1 PFFLPGVCMY 10 75 595.2748036591099 1188.5350543850197 2 595.2747192382812 MULTI HCD FTMS 0 0 0 23837 205031.53125 0.5031495307586826 -4 0.08835601806640625 3 Oxidation (M) _PFFLPGVCM(Oxidation (M))Y_ ENSG00000135355|ENST00000369352|GJA10;GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant 24.67388899826682 0.2803207841117527 1 {I|L}M{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}SP 7 -1 85.645 0 0 7.2059 0 0 0 350.08445154361567 350.08445154361567 70.63493505467618 0 0 0 0 2.594187677400525 1.6989700043360187 1.4489700043360187 0 {I|L}M{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}SP 7.2059 - 389 + NaN NaN 172141.5 NaN 19536 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23841 94.397 NaN 366350 35 0 31589 0.261 + 11175 IYIWDLNNF 9 69 599.3004589776755 1196.5863650221509 2 599.3008422851562 MULTI HCD FTMS 0 0 0 23837 160850.046875 0.02028753896773475 32 -0.7615890502929688 4 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 99.75527289724121 0.004270341300239591 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 98.638 0 0 8.2433 8.2433 91.863 0 0 0 1.5456127174702061 1.5456127174702061 1.5456127174702061 9.208187539523749 0 2.6549471895720984 1.6989700043360187 0 0.3494850021680094 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}[YE][HV]N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}DW{I|L}K{M(Oxidation (M))|F} 8.2433;7.4737;7.3446;6.4158;5.7632;4.9937;4.9937;3.0651;0.72251 +;-;-;-;-;-;-;-;- + 635 NaN NaN 136910.7 NaN 19537 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23842 94.4 NaN 347850 35 0 41230 0.261 + 18690 MYPTAPELLV 10 59 567.3015736506451 NaN 0 567.3157958984375 PEAK HCD FTMS 0 0 0 23837 12984.619140625 0.42859073210598037 2 -0.05570220947265625 5 Unmodified _MYPTAPELLV_ ENST00000379938.6_3_6:7250695-7251052:+|nuORF 7.289230182591677 0.3339457182549222 1 V{I|L} 2 9 10.969 0 0 0.9685 0 0 131.06521692143264 786.3474215143186 917.4126384357512 0 0 0 0 0 0 0 0 0 V{I|L} 0.9685 - 29 + NaN NaN 130052.1 NaN 19538 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23843 94.403 NaN 339900 35 0 41234 0.263 + -1 HTGCHNEPICF 11 56 438.85019352402225 1313.5287511722668 3 438.85003662109375 MULTI HCD FTMS 0 0 0 23837 92775.0625 0.48132554449429155 2 -0.05570220947265625 6 Carbamidomethyl (C) _HTGC(Carbamidomethyl (C))HNEPICF_ REV__ENSG00000138315|ENST00000334011|OIT3;REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3 1.4551175022131473 0.41253901545122046 1 YP 2 -1 16.454 0 0 1.2526 0 0 1035.4020611417502 0 1035.4020611417502 0 1.7609125905568135 0 0 0 0 0 0 0 YP 1.2526 - 29 NaN NaN 134909.5 NaN 19539 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23844 94.407 NaN 115020 35 0 12195 0.261 + 13476 KYPENFFLL 9 42 585.8133937022669 1169.6122344713337 2 585.8133544921875 MULTI HCD FTMS 0 0 0 23837 78767.1953125 0.7905311436951067 -10 0.20536041259765625 7 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 34.693 0 0 2.9662 0 0 778.362596580275 0 778.362596580275 0 16.27636252551653 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.9662 + + 24 NaN NaN 111713.1 NaN 19540 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23845 94.41 NaN 181120 35 0 19313 0.261 + 33076 YDLGVLDYLS 10 50 579.2926979458318 NaN 0 579.2923583984375 PEAK HCD FTMS 0 0 0 23837 40961.359375 0.7235853193599862 -4 0.08835601806640625 8 Unmodified _YDLGVLDYLS_ ENST00000444025.1_1_7:23602816-23603164:-|nuORF 6.723162845929126 0.3344301934401713 1 {I|L} 1 9 7.0116 0 0 0.60624 0 0 793.3900701086574 247.07111536197502 1040.4611854706325 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.60624 + + 10 + NaN NaN 113471.3 NaN 19541 4302 23837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23847 94.415 NaN 7056000 35 0 1138000 0.327 + 1294 AYNDNWFITF 10 93 645.7924385314823 1289.5703241297645 2 645.7926025390625 MULTI HCD FTMS 0 0 0 23846 4853686.5 0.46873973298072247 3 -0.056640625 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 200.32105748857333 3.4553563873582277E-23 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 10 0 + 117.36 0 0 9.1005 9.1005 92.276 0 0 0 15.608091514999288 87.18051939010127 15.608091514999288 9.164539485499247 0 3.0021934810768762 1.0969100130080565 0.9049471895720984 2.048455006504028 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDGGW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}[HD]VNDN{[ES]|[DT]|[{I|L}C]};{[TV]|[{I|L}S]}T[QP]WNDN{[ES]|[DT]|[{I|L}C]} 9.1005;8.3899;8.3899;7.6831;6.9725;6.9725;6.0935;5.0055;3.7849;3.1896 +;-;-;-;-;-;-;-;-;- + 2254 NaN NaN 553901.5 NaN 19542 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23848 94.419 NaN 510490 35 0 27267 0.264 + 11974 KFQVMYRRIL 10 87 451.93248683120106 1352.7756310938032 3 451.9325866699219 MULTI HCD FTMS 0 0 0 23846 365091.34375 0.5084450834781546 14 -0.31816864013671875 2 Unmodified _KFQVMYRRIL_ ENSG00000135966|ENST00000393359|TGFBRAP1 3.3196427980023873 0.4577323075863651 1 N{[HG]|PP}N 4 10 15.177 0 0 1.1219 0 0 912.5168324201187 0 912.5168324201187 0 5.445312593723983 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.1219 - 76 NaN NaN 161167.9 NaN 19543 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23849 94.423 NaN 211800 35 0 76358 0.261 + 14246 LCFWWHSS 8 45 533.2344101053567 1064.4542672775133 2 533.2346801757812 MULTI HCD FTMS 0 0 0 23846 104315.6796875 0.4611146976796678 3 -0.056640625 3 Unmodified _LCFWWHSS_ REV__ENST00000307450.10_1_10:99375749-99375869:-|nuORF 0.7936320650641473 0.540814922690045 1 M 1 -1 5.4846 0 0 0.51525 0 0 61.01426286053931 869.3662979364616 930.380560797001 0 0 0 0 0 0 0 0 0 M 0.51525 - 2 + NaN NaN 106170.3 NaN 19544 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23850 94.426 NaN 498160 35 0 47312 0.261 + 6090 FPEEVIATIF 10 61 583.3103729426534 1164.6061929521068 2 583.3106079101562 MULTI HCD FTMS 0 0 0 23846 195882.828125 0.4287297139540473 -17 0.361541748046875 4 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 53.832793166522166 0.06385051108671999 1 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 62.792 0 0 5.3917 0 0 601.275954575832 0 601.275954575832 0 18.201943357840094 0 0 0 2.305462187404089 0 0.805462187404089 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 5.3917 + + 288 NaN NaN 154512.7 NaN 19545 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23851 94.43 NaN 158830 35 0 14349 0.261 -1 SPMDIFDMF 9 58 559.7304457879821 1117.4463386427642 2 559.7308349609375 MULTI HCD FTMS 0 0 0 23846 51395.05859375 0.6464535676481143 -3 0.08513641357421875 5 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 26.88365393820708 0.12808753336095696 1 {I|L}W[K{I|L}]DM{M(Oxidation (M))|F} 7 -1 47.836 0 0 4.2808 0 0 165.96869079295794 0 165.96869079295794 0 37.65826334793921 0 0 0 1.3807196863200843 0 0.3807196863200844 0 {I|L}W[K{I|L}]DM{M(Oxidation (M))|F} 4.2808 - 106 + NaN NaN 110143.1 NaN 19546 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23852 94.433 NaN 69508 35 0 4921.4 0.261 + -1 IYVAPRKAML 10 51 589.3427580309803 NaN 0 589.3192749023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _IYVAPRKAM(Oxidation (M))L_ REV__ENSG00000112425|ENST00000367519|EPM2A;REV__nc|ENSG00000112425|O95278-2|EPM2A;REV__nc|ENSG00000112425|O95278-6|EPM2A;REV__nc|ENSG00000112425|O95278-7|EPM2A;REV__nc|ENSG00000112425|O95278-8|EPM2A 3.944395688203298 0.33680843299986807 1 V 1 -1 5.4846 0 0 0.46611 0 0 779.4604661578607 295.1092928522094 1074.5697590100701 0 0 0 0 0 0 0 0 0 V 0.46611 + + 19 + NaN NaN 104009.4 NaN 19547 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23853 94.436 NaN 92570 35 0 9534.9 0.261 + 3429 EFLFGEVAI 9 44 512.7710785130541 1023.5276040929083 2 512.7890014648438 MULTI HCD FTMS 0 0 0 23846 9023.822265625 0.016179386502703116 31 -0.7320938110351562 7 Unmodified _EFLFGEVAI_ REV__ENSG00000205060|ENST00000378509|SLC35B4;REV__nc|ENSG00000205060|Q969S0-2|SLC35B4;REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 3.944395688203298 0.32111559684428237 1 A{I|L} 2 -1 14.693 0 0 1.4355 0 0 821.3926869123062 0 821.3926869123062 0 14.69273760456403 0 0 0 0 0 0 0 A{I|L} 1.4355 + + 1 NaN NaN 93821.4 NaN 19548 4303 23846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23855 94.441 NaN 1015000 35 0 158770 0.327 + 31960 VYPGLAVFF 9 46 506.77887089011085 1011.5431888470217 2 506.77880859375 MULTI HCD FTMS 0 0 0 23854 472241.90625 0.2968248662418861 4 -0.07926177978515625 1 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 79.93452657146344 0.0058735632865073864 1 [YV][PG]{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 72.33 0 0 7.1504 7.1504 95.421 0 0 0 18.133637307377057 53.74606867853579 18.133637307377057 72.32956253501804 0 2.4247425010840047 1.5228787452803376 0 0 + + [YV][PG]{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.1504 + + 69 NaN NaN 245939.7 NaN 19549 4304 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23856 94.445 NaN 670620 35 0 75650 0.261 -1 0 78 527.2853248205339 526.2780483539339 1 527.3026123046875 MULTI HCD FTMS 0 0 0 23854 16613.68359375 0.18645368936576856 4 -0.07926177978515625 2 NaN NaN 1 WT{M(Oxidation (M))|F} 3 -1 35.872 0 0 6.8162 0 0 74.06398082639323 0 74.06398082639323 0 18.77127807943175 0 0 0 0.8807196863200843 0 0.3252574989159953 0 WT{M(Oxidation (M))|F} 6.8162 - 72 + NaN NaN 193614.7 NaN 19550 4304 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23857 94.449 NaN 394230 35 0 70786 0.261 -1 SYIFMPFSF 9 67 577.7649230958909 1153.5152932585818 2 577.763427734375 MULTI HCD FTMS 0 0 0 23854 73720.5859375 0.42286537845015904 -2 0.05570220947265625 3 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 34.40172386719151 0.0910440009062557 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F} 9 -1 + 25.414 0 0 2.2032 2.2032 85.19 0 0 0 3.647796442267655 13.546890295582733 3.647796442267655 12.257724967479852 0 1.5356668758921828 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}E[YV]S{M(Oxidation (M))|F} 2.2032;1.1405 +;- + 119 NaN NaN 141099.1 NaN 19551 4304 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23858 94.452 NaN 44845 35 0 6663.4 0.261 + 16329 LRKLARNPKD 10 32 605.8718682331544 1209.7291835331087 2 605.872314453125 MULTI HCD FTMS 0 0 0 23854 17778.06640625 0.08180314408954519 15 -0.35628509521484375 4 Unmodified _LRKLARNPKD_ REV__ENSG00000135824|ENST00000515211|RGS8;REV__nc|ENSG00000135824|P57771-2|RGS8 0.35063188157827746 0.47344775436540215 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102311 NaN 19552 4304 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23859 94.456 NaN 54560 35 0 8017.4 0.261 + 34066 YNIWSIVAEF 10 31 621.3137124626409 1240.6128719920816 2 622.3173217773438 MULTI HCD FTMS 0 0 0 23854 18277.048828125 0.313888976100313 4 -0.07926177978515625 5 Unmodified _YNIWSIVAEF_ REV__ENSG00000146021|ENST00000309755|KLHL3;REV__ENST00000504208.5_1_5:136964069-137033992:-|nuORF;REV__ENST00000504496.5_1_5:136997591-137028142:-|nuORF;REV__nc|ENSG00000146021|Q9UH77-2|KLHL3;REV__nc|ENSG00000146021|Q9UH77-3|KLHL3 3.5964929083625545 0.45626689593999237 1 [YN]{I|L} 3 -1 22.676 0 0 1.8278 0 0 0 847.3986454586424 847.3986454586424 22.67606240177031 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L} 1.8278 + + 29 NaN NaN 89330.4 NaN 19553 4304 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23860 94.459 NaN 56394 35 0 5461.2 0.262 + 31033 VSSANQSLTI 10 32 510.2738715662927 NaN 0 510.27392578125 PEAK HCD FTMS 0 0 0 23854 7299.6630859375 0.3796510697733477 1 -0.02277374267578125 6 Unmodified _VSSANQSLTI_ REV__ENST00000281317.9_1_4:146540545-146560281:+|nuORF 1.1933415558491238 0.33916295405077446 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92509.3 NaN 19554 4304 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23862 94.464 NaN 80248 35 0 5269.7 0.411 + 31553 VYGTIFLTF 9 65 530.7893495108823 1059.5641460885645 2 530.7894897460938 MULTI HCD FTMS 0 0 0 23861 31021.263671875 0.1575195673561358 16 -0.385955810546875 1 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 32.30548876998284 0.10066689432505688 1 {I|L}T{M(Oxidation (M))|F} 3 6 42.619 0 0 4.0224 0 0 680.3536491176645 0 680.3536491176645 0 18.182503180159344 0 0 0 1.3807196863200843 0 0.5 0 + {I|L}T{M(Oxidation (M))|F} 4.0224 + + 95 + NaN NaN 116316.1 NaN 19555 4305 23861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23864 94.471 NaN 1218600 35 0 177300 0.327 + 7563 FYDPLVLQL 9 72 554.3078377963003 1106.6011226594005 2 554.3080444335938 MULTI HCD FTMS 0 0 0 23863 1017112.125 0.8965473510144655 -9 0.190643310546875 1 Unmodified _FYDPLVLQL_ REV__ENSG00000178695|ENST00000377474|KCTD12 65.23502041540118 0.010630085227462206 1 {I|L}V{I|L}Q{I|L} 5 -1 58.003 0 0 5.2416 0 0 522.2129994123062 0 522.2129994123062 0 39.33098439955742 0 0 0 1.8494850021680094 0 0 0.3054621874040891 {I|L}V{I|L}Q{I|L} 5.2416 + + 243 NaN NaN 263598.9 NaN 19556 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23865 94.476 NaN 417390 35 0 31909 0.261 + 7016 FPYPLQWSL 9 59 575.8005980124475 1149.586643091695 2 575.8004760742188 MULTI HCD FTMS 0 0 0 23863 229289.109375 1 0 0 2 Unmodified _FPYPLQWSL_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 43.77239144664712 0.04802738721622131 1 EQWS{I|L} 5 5 53.628 0 0 4.665 0 0 488.2677479474625 0 488.2677479474625 0 18.6624210949784 0 0 0 1.4247425010840047 0 0.3807196863200844 0 EQWS{I|L} 4.665 - 438 NaN NaN 153381.9 NaN 19557 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23866 94.479 NaN 228800 35 0 12069 0.263 -1 0 68 457.6082332782322 1369.8028704348967 3 457.6082458496094 MULTI HCD FTMS 0 0 0 23863 163958.515625 0.5684368905742145 32 -0.7468795776367188 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 0.87529 0 0 1204.724773976692 0 1204.724773976692 0 4.643331241078172 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.87529 - 9 + NaN NaN 125760 NaN 19558 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23867 94.483 NaN 171950 35 0 28390 0.261 -1 MELGLSWVF 9 40 549.2700404769001 1096.5255280206002 2 549.2706298828125 MULTI HCD FTMS 0 0 0 23863 93637.8671875 0.9407611488895301 6 -0.133697509765625 4 Oxidation (M) _M(Oxidation (M))ELGLSWVF_ nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000211942|P01766|IGHV3-13 28.486842064014134 0.11819662193267319 1 SWV{M(Oxidation (M))|F} 4 -1 49.993 0 0 4.5592 0 0 559.2670870532692 0 559.2670870532692 0 41.04039720691517 0 0 0 1.4247425010840047 0 0.3807196863200844 0 SWV{M(Oxidation (M))|F} 4.5592 + + 46 NaN NaN 105960.7 NaN 19559 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23868 94.486 NaN 166420 35 0 56203 0.261 + 33102 YDTAEDEFI 9 39 551.7328546414715 1101.4511563497429 2 551.73291015625 MULTI HCD FTMS 0 0 0 23863 94589.890625 0.23037307957518902 -6 0.14177703857421875 5 Unmodified _YDTAEDEFI_ tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1 11.640296217721598 0.25978676193971967 1 E{M(Oxidation (M))|F}{I|L} 3 6 33.5 0 0 3.0414 0 0 694.2455921857437 0 694.2455921857437 0 18.015384402724592 0 0 0 0.5 0 0.3807196863200844 0 + E{M(Oxidation (M))|F}{I|L} 3.0414 + + 10 NaN NaN 111958.4 NaN 19560 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23869 94.489 NaN 100550 35 0 8338.2 0.261 -1 IMFLIDFYQ 9 43 603.2982279981225 1204.5819030630448 2 603.2979125976562 MULTI HCD FTMS 0 0 0 23863 84060.1484375 0.8712064214567626 3 -0.0650634765625 6 Oxidation (M) _IM(Oxidation (M))FLIDFYQ_ ENST00000274496.9_1_5:143539608-143539680:-|nuORF 22.736283301280096 0.1639198954644489 1 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6 -1 77.696 0 0 6.45 0 0 0 469.13837610416255 469.13837610416255 70.70615965204567 0 0 0 0 1.6549471895720984 1.6989700043360187 0 0 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6.45 - 89 + NaN NaN 94862.4 NaN 19561 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23870 94.493 NaN 209980 35 0 29081 0.261 + 14473 LEWLVTAPF 9 52 538.2945059117986 1074.5744588903972 2 538.294189453125 MULTI HCD FTMS 0 0 0 23863 86834.9296875 0.19392652753066325 -14 0.29149627685546875 7 Unmodified _LEWLVTAPF_ REV__ENSG00000155363|ENST00000369645|MOV10;REV__ENST00000468624.5_1_1:113217534-113241292:+|nuORF;REV__ENST00000496577.5_1_1:113231344-113241292:+|nuORF;REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 16.942295170755138 0.21397866736869717 1 VYAS 4 -1 59.24 0 0 5.5129 0 0 0 651.3524874322874 651.3524874322874 30.21652514092061 0 0 0 0 0.7302046884880937 2 0 0 VYAS 5.5129 - 30 + NaN NaN 113154.2 NaN 19562 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23871 94.496 NaN 60166 35 0 5868.9 0.261 + 34899 YSHEYPFFS 9 39 588.755742591358 NaN 0 588.7548828125 PEAK HCD FTMS 0 0 0 23863 31376.4921875 1 0 0 8 Unmodified _YSHEYPFFS_ REV__ENSG00000182183|ENST00000517870|SHISAL2A;REV__ENST00000401050.7_1_1:53099138-53105680:+|nuORF;REV__ENST00000440303.5_1_1:53099138-53125209:+|nuORF;REV__nc|ENSG00000182183|Q6UWV7-2|SHISAL2A 14.838274106304384 0.2220448417561729 1 {I|L} 1 -1 11.99 0 0 1.02 0 0 250.0978226229957 809.2956026666624 1059.3934252896581 0 0 0 0 0 0.5 0 0 0 {I|L} 1.02 - 1 + NaN NaN 107010.2 NaN 19563 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23872 94.499 NaN 89086 35 0 7669.6 0.261 + 26928 SYLENLENLF 10 37 621.306724892064 1240.598896850928 2 621.8085327148438 MULTI HCD FTMS 0 0 0 23863 23167.94921875 0.6922423851814485 -2 0.03043365478515625 9 Unmodified _SYLENLENLF_ ENSG00000179715|ENST00000546455|PCED1B 27.088373467376528 0.2577365110389662 1 EN{I|L}EN{I|L}{M(Oxidation (M))|F} 7 3 48.32 0 0 3.8949 0 0 363.18016249824376 0 363.18016249824376 0 28.398576025216396 0 0 0 2.1989700043360187 0 0 0 + EN{I|L}EN{I|L}{M(Oxidation (M))|F} 3.8949 + + 134 NaN NaN 110978.8 NaN 19564 4306 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23874 94.504 NaN 1379400 35 0 337560 0.327 + 11134 IYIPSYFDF 9 75 582.7843070882576 1163.5540612433151 2 582.7844848632812 MULTI HCD FTMS 0 0 0 23873 515416.8125 0.27843067915368264 -5 0.11871337890625 1 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 125.62461146993168 0.0008703235425492373 1 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}] + + 75.214 22.218 8.046 6.4642 6.4642 64.105 0 0 0 0 49.29637907846235 0 0 0 2.805462187404089 0 1.0484550065040281 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.4642 + + 341 + NaN NaN 283543.7 NaN 19565 4307 23873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23875 94.509 NaN 225900 35 0 22947 0.262 -1 LLWGVQVT 8 58 479.2732819725092 956.5320110118184 2 479.2728576660156 MULTI HCD FTMS 0 0 0 23873 35377.046875 0.3244197571090599 1 -0.0162506103515625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLWGVQVT_ ENST00000515406.2_1_5:149380015-149380054:-|nuORF 12.531546534597751 0.5015908124873912 1 MAV[WP]AV 7 -1 28.716 0 0 3.0021 0 0 0 199.10885034732658 199.10885034732658 20.92941036290071 0 0 0 0 0 0 0 0 MAV[WP]AV 3.0021 - 57 + NaN NaN 128377.5 NaN 19566 4307 23873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23876 94.512 NaN 494640 35 0 73965 0.261 + 16803 LYEADFVLF 9 69 558.7841053496768 1115.5536577661535 2 558.7838745117188 MULTI HCD FTMS 0 0 0 23873 120595.65625 0.40335811488511114 -6 0.14484405517578125 3 Unmodified _LYEADFVLF_ ENSG00000136213|ENST00000618655|CHST12 71.13359017698441 0.008721403657255008 1 [Y{I|L}]EAD{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 9 0 + 69.741 0 0 6.2517 6.2517 92.815 0 0 0 2.9833247972062793 51.80909368620867 2.9833247972062793 40.516609670558594 0 2.7059771852360797 0 0.3807196863200844 0 + + [Y{I|L}]EAD{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[Y{I|L}]E[{M(Oxidation (M))|F}V]{[DA]|[EG]}{I|L}{M(Oxidation (M))|F} 6.2517;2.6197 +;- + 203 NaN NaN 158145.5 NaN 19567 4307 23873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23877 94.515 NaN 141570 35 0 16991 0.261 + 2652 DVFNSVAFDF 10 41 580.7643292274156 1159.514105521631 2 580.7642822265625 MULTI HCD FTMS 0 0 0 23873 20772.447265625 0.38160014765285705 -8 0.20006561279296875 4 Unmodified _DVFNSVAFDF_ REV__ENSG00000169760|ENST00000695368|NLGN1;REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1;REV__nc|ENSG00000169760|Q8N2Q7|NLGN1 2.735195868890462 0.4608258780945842 1 V 1 -1 6.9897 0 0 0.60281 0 0 157.0763751157188 900.3678072565061 1057.444182372225 0 0 0 0 0 0 0 0 0 V 0.60281 + + 10 + NaN NaN 93508.3 NaN 19568 4307 23873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23879 94.52 NaN 858220 35 0 127010 0.327 + 34494 YPFLLVGDLM 10 54 592.3074092060276 1182.6002654788551 2 592.3074340820312 MULTI HCD FTMS 0 0 0 23878 476098.3125 0.6390905746474549 2 -0.0357818603515625 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 112.59319219568356 4.798275876566979E-05 1 [Y{I|L}]M{I|L}{I|L}VGD{I|L}T 10 3 93.867 0 0 7.9373 0 0 0 60.975148379305125 60.975148379305125 75.20812200728862 0 0 0 0 2.7302046884880937 1.5228787452803376 1.274227503252014 0 [Y{I|L}]M{I|L}{I|L}VGD{I|L}T 7.9373 - 783 NaN NaN 225293.3 NaN 19569 4308 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23880 94.525 NaN 464570 35 0 33888 0.261 -1 PFFLPGVCMY 10 75 595.2748036591099 1188.5350543850197 2 595.2747192382812 MULTI HCD FTMS 0 0 0 23878 245620.265625 0.6027547111441754 2 -0.0357818603515625 2 Oxidation (M) _PFFLPGVCM(Oxidation (M))Y_ ENSG00000135355|ENST00000369352|GJA10;GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant 18.13498045792455 0.3414835283589826 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}SP 7 -1 64.148 0 0 5.3972 0 0 0 350.08608557725546 350.08608557725546 44.50659450546418 0 0 0 0 2.110924374808178 1.6989700043360187 0.75 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}SP 5.3972 - 310 NaN NaN 164635.7 NaN 19570 4308 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23881 94.528 NaN 90871 35 0 11081 0.262 + 22677 QWSRLRRRAGR 11 42 481.28362410383244 1440.8290429116973 3 481.2837829589844 MULTI HCD FTMS 0 0 0 23878 46586.6015625 0.44632877547557515 6 -0.120635986328125 3 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 0.4545168274142398 0.41692731010159206 1 S 1 -1 2.4743 0 0 0.17172 0 0 1026.5836643490004 324.1926363580688 1350.7763007070691 0 0 0 0 0 0 0 0 0 S 0.17172 + + 12 + NaN NaN 90011.2 NaN 19571 4308 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23882 94.532 NaN 216510 35 0 24425 0.261 -1 LIFCFFVF 8 60 546.7832151687095 1091.5518774042189 2 546.7842407226562 MULTI HCD FTMS 0 0 0 23878 42422.0390625 0.18921452788405035 -7 0.16109466552734375 4 Carbamidomethyl (C) _LIFC(Carbamidomethyl (C))FFVF_ ENSG00000157111|ENST00000454765|TMEM171;nc|ENSG00000157111|Q8WVE6-2|TMEM171 11.114462752807354 0.5120171699125776 1 G{I|L}{I|L}D[HV]V{M(Oxidation (M))|F} 8 -1 42.829 0 0 3.9237 0 0 193.0850173222904 0 193.0850173222904 0 33.13608784304506 0 0 0 1.8494850021680094 0 0 0 G{I|L}{I|L}D[HV]V{M(Oxidation (M))|F} 3.9237 - 120 + NaN NaN 116531.8 NaN 19572 4308 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23884 94.537 NaN 249710 35 0 22906 0.327 + 11176 IYIWDLNNF 9 64 599.3004589776755 1196.5863650221509 2 599.3012084960938 MULTI HCD FTMS 0 0 0 23883 120455.2734375 0.015192666096215123 39 -0.9431533813476562 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 99.75527289724121 0.004270341300239591 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 102.2 0 0 8.5412 8.5412 92.329 0 0 0 24.13734275855269 95.53395642852614 24.13734275855269 9.208187539523749 0 2.6549471895720984 1.6989700043360187 0 0.7059771852360797 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F} 8.5412;7.7717;7.4535;6.4158 +;-;-;- + 414 NaN NaN 135386.3 NaN 19573 4309 23883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23885 94.541 NaN 440780 35 0 85024 0.261 + 26832 SYIFMPFSF 9 68 577.7649230958909 1153.5152932585818 2 577.7651977539062 MULTI HCD FTMS 0 0 0 23883 94683.2421875 0.5431083398394245 3 -0.068634033203125 2 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 58.678817012210395 0.019429721296335044 1 {M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Y{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F} 9 4 + 34.209 0 0 2.9656 2.9656 82.736 0 0 0 13.925449767853323 13.763415436503351 13.763415436503351 8.354706403678886 0 1.1861818737241734 0 0.3807196863200844 0 {M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Y{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SY{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}E[YV]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[R{I|L}]QQG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SY[EC]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[R{I|L}]A{[QG]|[NA]}G{M(Oxidation (M))|F} 2.9656;2.2413;1.9991;1.1787;0.78383;0.72539;0.67508;0.55904 -;+;-;-;-;-;-;- + 275 + NaN NaN 161192 NaN 19574 4309 23883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23886 94.545 NaN 252720 35 0 32812 0.262 + 26598 SVVLWAVAL 9 54 479.29213885493255 956.5697247766651 2 479.2919921875 MULTI HCD FTMS 0 0 0 23883 59698.859375 0.743375995061187 -3 0.0650634765625 3 Unmodified _SVVLWAVAL_ ENSG00000167769|ENST00000301452|ACER1 21.74664581756881 0.17247014374749275 1 AVA{I|L} 4 5 40.918 0 0 4.2775 0 0 584.3309947696829 0 584.3309947696829 0 26.56508933499886 0 0 0 1.5 0 0 0 + AVA{I|L} 4.2775 + + 147 NaN NaN 125898.4 NaN 19575 4309 23883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23887 94.548 NaN 213650 35 0 10582 0.261 -1 NVCDSVWPF 9 64 562.2477930555228 1122.4810331778456 2 562.2479248046875 MULTI HCD FTMS 0 0 0 23883 57853.578125 0.5641658167651745 -5 0.09549713134765625 4 Carbamidomethyl (C) _NVC(Carbamidomethyl (C))DSVWPF_ ENST00000264193.2_1_3:98298298-98298397:-|nuORF 7.289230182591677 0.29575926068275815 1 DVP{M(Oxidation (M))|F} 4 -1 25.177 0 0 2.243 0 0 646.2523782479612 0 646.2523782479612 0 18.098943791441968 0 0 0 0.5 0 0 0 DVP{M(Oxidation (M))|F} 2.243 - 287 + NaN NaN 117814 NaN 19576 4309 23883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23888 94.551 NaN 133890 35 0 22786 0.261 + 12224 KKYSDEFDF 9 57 589.7738036940649 1177.5330544549297 2 589.772216796875 MULTI HCD FTMS 0 0 0 23883 39625.1328125 0.647708279911201 -2 0.0324859619140625 5 Unmodified _KKYSDEFDF_ REV__ENSG00000143494|ENST00000517399|VASH2;REV__ENST00000271776.4_1_1:213134679-213146780:+|nuORF;REV__nc|ENSG00000143494|Q86V25-2|VASH2;REV__nc|ENSG00000143494|Q86V25-3|VASH2;REV__nc|ENSG00000143494|Q86V25-5|VASH2;REV__nc|ENSG00000143494|Q86V25-6|VASH2 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 -1 31.555 0 0 2.6797 0 0 750.3569813459 0 750.3569813459 0 13.138181262758263 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.6797 + + 157 NaN NaN 109633.3 NaN 19577 4309 23883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23890 94.556 NaN 1599300 35 0 263010 0.327 + 1295 AYNDNWFITF 10 75 645.7924385314823 1289.5703241297645 2 645.7931518554688 MULTI HCD FTMS 0 0 0 23889 700949.9375 0.06769351224818582 10 -0.27082061767578125 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 124.953037156858 2.971737173510385E-05 1 DNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 7 3 93.171 0 0 7.225 0 0 348.1412831037125 0 348.1412831037125 0 69.81151528454517 0 0 0 2.7134679910804405 0 0.6109243748081782 2.024227503252014 + DNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 7.225 + + 408 NaN NaN 326394.5 NaN 19578 4310 23889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23891 94.561 NaN 442420 35 0 23190 0.264 + -1 RLFKMAVLRFG 11 87 451.93248683120106 1352.7756310938032 3 451.93267822265625 MULTI HCD FTMS 0 0 0 23889 277590.625 0.38658705805286053 21 -0.5288772583007812 2 Oxidation (M) _RLFKM(Oxidation (M))AVLRFG_ REV__ENSG00000243678|ENST00000512737|NME2;REV__ENST00000485076.1_1_17:49244191-49244524:+|nuORF;REV__nc|ENSG00000243678|P22392-2|NME2 2.4347853303010236 0.4082425251555256 1 Q{[HG]|PP}N{[HG]|PP}N 7 -1 17.496 0 0 1.2934 0 0 590.3542347638687 0 590.3542347638687 0 5.277741520425678 0 0 0 1.2302046884880937 0 0 0 Q{[HG]|PP}N{[HG]|PP}N 1.2934 - 107 NaN NaN 167517.6 NaN 19579 4310 23889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23892 94.564 NaN 220350 35 0 44172 0.261 + 6111 FPEGLFYEF 9 58 574.7687124378033 NaN 0 574.7684936523438 PEAK HCD FTMS 0 0 0 23889 99909.5703125 0.06349599200084335 31 -0.7373809814453125 3 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 37.97399986684836 0.08477284381764581 1 EY{M(Oxidation (M))|F} 3 6 41.242 0 0 3.594 0 0 165.07917983222814 540.2464309565091 705.3256107887373 0 0 0 0 0 2 0 0.805462187404089 0 EY{M(Oxidation (M))|F} 3.594 - 64 NaN NaN 118923.8 NaN 19580 4310 23889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23893 94.567 NaN 180330 35 0 17240 0.261 + 20668 PFLHLMMQL 9 49 565.2987909743917 1128.5830290155834 2 565.2993774414062 MULTI HCD FTMS 0 0 0 23889 93997.1796875 0.5402003362883908 -5 0.0922698974609375 4 Unmodified _PFLHLMMQL_ ENST00000539526.5_1_11:117708658-117708883:-|nuORF 12.531546534597751 0.2520865569484384 1 PE 2 8 24.464 0 0 2.1677 0 0 884.4635822598009 0 884.4635822598009 0 3.4948500216800937 0 0 0 0.3494850021680094 0 0 0 PE 2.1677 - 59 NaN NaN 106371.3 NaN 19581 4310 23889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23894 94.571 NaN 120290 35 0 14325 0.261 + 26929 SYLENLENLF 10 42 621.306724892064 1240.598896850928 2 621.306396484375 MULTI HCD FTMS 0 0 0 23889 28946.578125 0.5815805711295308 4 -0.0848541259765625 5 Unmodified _SYLENLENLF_ ENSG00000179715|ENST00000546455|PCED1B 59.05245873256422 0.044867740978679724 1 Y[HK]EN{I|L}{M(Oxidation (M))|F} 7 5 57.752 0 0 4.6552 0 0 291.1217518537125 0 291.1217518537125 0 44.7931914553854 0 0 0 1.8494850021680094 0 0 1.2302046884880937 Y[HK]EN{I|L}{M(Oxidation (M))|F} 4.6552 - 232 NaN NaN 97278.1 NaN 19582 4310 23889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23895 94.574 NaN 166630 35 0 23136 0.261 + 35906 YYTASYAKDP 10 60 589.7738036940649 1177.5330544549297 2 589.77392578125 MULTI HCD FTMS 0 0 0 23889 26353.83984375 0.4307771119663193 -1 0.0195465087890625 6 Unmodified _YYTASYAKDP_ ENSG00000173517|ENST00000682557|PEAK1 13.90604991867851 0.3810395177745597 1 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 9 32.619 0 0 2.7702 0 0 750.3609221299258 0 750.3609221299258 0 15.33932200095428 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.7702 - 163 NaN NaN 121160.7 NaN 19583 4310 23889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23897 94.579 NaN 482060 35 0 70419 0.327 + 31424 VYASLGALLF 10 68 527.3026184396423 1052.5906839460845 2 527.3026733398438 MULTI HCD FTMS 0 0 0 23896 312602.375 0.6835394133339602 1 -0.02619171142578125 1 Unmodified _VYASLGALLF_ ENSG00000178719|ENST00000395068|GRINA;ENST00000533377.1_1_8:145066406-145067006:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [YV]AS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 109.52 0 0 10.405 10.405 95.359 0 0 0 14.744237387763093 87.12750204500642 14.744237387763093 11.136218907515314 0 3.1861818737241734 1.0969100130080565 1.8556270500406935 0 + + [YV]AS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F};[YV]AS{I|L}Q{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[TA]GA{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][TA]{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[QT]A{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[TA]Q{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[TA]GA{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}[TA]GA{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][TA]{I|L}Q{I|L}{I|L}{M(Oxidation (M))|F};[YV]A[{I|L}T]N{I|L}{I|L}{M(Oxidation (M))|F} 10.405;9.3471;7.7569;7.1781;7.1363;6.6989;6.2779;6.2143;6.1201;6.0415 +;-;-;-;-;-;-;-;-;- + 857 NaN NaN 179056 NaN 19584 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23898 94.583 NaN 270710 35 0 30124 0.261 + 31961 VYPGLAVFF 9 44 506.77887089011085 1011.5431888470217 2 506.7787170410156 MULTI HCD FTMS 0 0 0 23896 96391.1796875 0.06058610775320153 11 -0.3070220947265625 2 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 56.04830969593885 0.023109620888794903 1 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 43.175 0 0 4.2683 0 0 529.2905620996984 0 529.2905620996984 0 43.17532531436136 0 0 0 1.4247425010840047 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2683 + + 21 + NaN NaN 127027.8 NaN 19585 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23899 94.587 NaN 560690 35 0 118780 0.261 + 10093 IFGVIIDTF 9 61 512.7892801653281 1023.5640073974563 2 512.7893676757812 MULTI HCD FTMS 0 0 0 23896 119388.40625 0.13805228081566293 -9 0.19364166259765625 3 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 89.42679046578446 0.004540987215715461 1 {I|L}{I|L}DT{M(Oxidation (M))|F} 5 4 66.23 0 0 6.4705 0 0 416.2431331877386 0 416.2431331877386 0 40.823872065994564 0 0 0 2.3494850021680094 0 1.2302046884880937 0 + {I|L}{I|L}DT{M(Oxidation (M))|F} 6.4705 + + 193 + NaN NaN 160750.4 NaN 19586 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23900 94.59 NaN 137190 35 0 13264 0.261 + 26930 SYLENLENLF 10 53 621.306724892064 1240.598896850928 2 621.3046875 MULTI HCD FTMS 0 0 0 23896 22703.9296875 0.45615631448806904 5 -0.12105560302734375 4 Unmodified _SYLENLENLF_ ENSG00000179715|ENST00000546455|PCED1B 55.24861242081279 0.058701489357514555 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EN{I|L}{M(Oxidation (M))|F} 10 0 + 64.034 0 0 5.1615 5.1615 85.777 0 0 0 3.379231027444405 42.836003313407076 3.379231027444405 9.164539485499255 0 2.517220322351953 0 0 0.4247425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}[TP]EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}{I|L}NE[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}{I|L}M[{I|L}A]SW;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}{I|L}N[C(Carbamidomethyl (C))K]W;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E[KQ]E[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E[KQ][C(Carbamidomethyl (C))K]W 5.1615;4.4228;3.9864;3.4198;2.6734;2.1114;2.0014;1.3784;0.70996 +;-;-;-;-;-;-;-;- + 279 NaN NaN 100609.8 NaN 19587 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23901 94.594 NaN 220670 35 0 54265 0.263 + 10413 IPADIVFVL 9 34 493.79968230260863 985.5848116720173 2 494.3017272949219 MULTI HCD FTMS 0 0 0 23896 36961.84765625 0.0639183415805013 -9 0.19364166259765625 5 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 1 V{M(Oxidation (M))|F}V{I|L} 4 5 44.553 0 0 4.5204 0 0 509.2848377912125 0 509.2848377912125 0 44.55259398656281 0 0 0 1.5 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.5204 + + 15 NaN NaN 112978.1 NaN 19588 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23902 94.597 NaN 71252 35 0 16711 0.261 + 32545 WHTWAFMS 8 33 533.2344101053567 1064.4542672775133 2 533.2351684570312 MULTI HCD FTMS 0 0 0 23896 20916.8125 0.0924602102124399 11 -0.3070220947265625 6 Unmodified _WHTWAFMS_ REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF 0.6903765706972694 0.5409681170271811 1 A 1 -1 4.6041 0 0 0.43253 0 0 604.2123372011446 386.1887301080688 990.4010673092134 0 0 0 0 0 0 0 0 0 A 0.43253 + + 1 + NaN NaN 87195.1 NaN 19589 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23903 94.6 NaN 82614 35 0 8504.3 0.261 + -1 QLLKMLKNLWR 11 41 486.9588820977935 NaN 0 486.958984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _QLLKM(Oxidation (M))LKNLWR_ REV__ENSG00000068878|ENST00000404125|PSME4 0.5059551277355931 0.3406848944787997 1 G 1 -1 3.9794 0 0 0.40944 0 0 361.554042416487 550.3091524713499 911.8631948878369 0 0 0 0 0 0 0 0 0 G 0.40944 - 1 + NaN NaN 87760.2 NaN 19590 4311 23896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23905 94.605 NaN 266680 35 0 66605 0.327 + 6287 FPFNPLDF 8 48 498.74486209914005 995.4751712650801 2 498.7449035644531 MULTI HCD FTMS 0 0 0 23904 139309.71875 0.19189826210227237 -5 0.1011199951171875 1 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 26.88365393820708 0.39599352634412927 1 N[{I|L}P]D{M(Oxidation (M))|F} 5 3 34.833 0 0 3.4991 0 0 391.19099623847814 0 391.19099623847814 0 13.740443741747441 0 0 0 1.5 0 0 0 + N[{I|L}P]D{M(Oxidation (M))|F} 3.4991 + + 52 NaN NaN 119227.9 NaN 19591 4312 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23906 94.61 NaN 72562 35 0 5800.9 0.261 + -1 YPFYKLDIM 9 37 603.2982279981225 1204.5819030630448 2 603.80078125 MULTI HCD FTMS 0 0 0 23904 7410.423828125 0.12835091537555293 6 -0.15927886962890625 2 Oxidation (M) _YPFYKLDIM(Oxidation (M))_ REV__ENSG00000069849|ENST00000286371|ATP1B3 8.155526934196011 0.2891920862272901 1 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6 -1 43.448 0 0 3.6069 0 0 0 469.1363619440063 469.1363619440063 38.84434091480394 0 0 0 0 0.3807196863200844 0 0 0 YP{M(Oxidation (M))|F}{I|L}{I|L}V 3.6069 - 40 + NaN NaN 96803.6 NaN 19592 4312 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23907 94.613 NaN 94353 35 0 8836.3 0.261 + 26931 SYLENLENLF 10 43 621.306724892064 1240.598896850928 2 621.3079833984375 MULTI HCD FTMS 0 0 0 23904 23609.0546875 0.4743416458308775 6 -0.15927886962890625 3 Unmodified _SYLENLENLF_ ENSG00000179715|ENST00000546455|PCED1B 40.72490554402381 0.1391161235525472 1 NE[TP]EN{I|L}{M(Oxidation (M))|F} 8 5 49.998 0 0 4.0301 0 0 278.1626454084 0 278.1626454084 0 32.85789402675583 0 0 0 0 0 0 1.1861818737241734 NE[TP]EN{I|L}{M(Oxidation (M))|F} 4.0301 - 153 NaN NaN 98921 NaN 19593 4312 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23908 94.616 NaN 87184 35 0 7945.1 0.261 -1 0 31 623.3212706805691 622.3139942139691 1 624.322998046875 MULTI HCD FTMS 0 0 0 23904 15165.51953125 0.508106111731641 -3 0.068634033203125 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 98840.1 NaN 19594 4312 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23910 94.621 NaN 988130 35 0 138550 0.326 + 7564 FYDPLVLQL 9 64 554.3078377963003 1106.6011226594005 2 554.3080444335938 MULTI HCD FTMS 0 0 0 23909 622128.5625 0.548383704205485 -2 0.0423736572265625 1 Unmodified _FYDPLVLQL_ REV__ENSG00000178695|ENST00000377474|KCTD12 47.748688679222035 0.03472022231463587 1 {I|L}V{I|L}Q{I|L} 5 -1 50.191 0 0 4.5356 0 0 522.2123890607437 0 522.2123890607437 0 36.695925227640984 0 0 0 1.6747425010840047 0 0 0 {I|L}V{I|L}Q{I|L} 4.5356 + + 133 NaN NaN 235071 NaN 19595 4313 23909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23911 94.626 NaN 505020 35 0 203180 0.261 + 33103 YDTAEDEFI 9 47 551.7328546414715 1101.4511563497429 2 551.7332153320312 MULTI HCD FTMS 0 0 0 23909 368007.09375 0.8962789462227776 1 -0.01958465576171875 2 Unmodified _YDTAEDEFI_ tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1 21.74664581756881 0.17247014374749275 1 E{M(Oxidation (M))|F}{I|L} 3 6 40.005 0 0 3.632 0 0 694.250163259558 0 694.250163259558 0 39.03598431600422 0 0 0 1 0 0.3807196863200844 0 + E{M(Oxidation (M))|F}{I|L} 3.632 + + 14 NaN NaN 159547.3 NaN 19596 4313 23909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23912 94.629 NaN 451210 35 0 55174 0.261 + 5916 FPDLPFTDEL 10 55 597.2900352759292 NaN 0 597.2899780273438 PEAK HCD FTMS 0 0 0 23909 182627.203125 0.8659413976338926 7 -0.2055511474609375 3 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 75.76082778847304 0.01768992020737262 1 EDPVYT{I|L} 7 7 42.534 0 0 3.5666 0 0 131.09457387425988 241.04602991275627 372.1406037870162 0 0 0 0 0 1.4698565171985376 0 0.7614393726401688 0 EDPVYT{I|L} 3.5666 - 188 + NaN NaN 161693.4 NaN 19597 4313 23909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23913 94.633 NaN 298620 35 0 13092 0.263 -1 MVLLFIHIRRG 11 84 457.6082332782322 1369.8028704348967 3 457.60809326171875 MULTI HCD FTMS 0 0 0 23909 158915.125 0.5509516793066089 39 -0.9341888427734375 4 Oxidation (M) _M(Oxidation (M))VLLFIHIRRG_ nc|ENSG00000014257|P15309-2|ACP3 1.4551175022131473 0.41253901545122046 1 D 1 -1 9.6041 0 0 0.70113 0 0 61.05176856399164 1190.678336561338 1251.7301051253296 0 0 0 0 0 0.5 0 0 0 D 0.70113 - 14 + NaN NaN 123810 NaN 19598 4313 23909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23914 94.636 NaN 142790 35 0 11998 0.261 + 13477 KYPENFFLL 9 47 585.8133937022669 1169.6122344713337 2 585.812744140625 MULTI HCD FTMS 0 0 0 23909 62947.625 0.6317612019409262 1 -0.01958465576171875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.0949 0 0 778.3675606347176 0 778.3675606347176 0 36.197887582883936 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0949 + + 19 NaN NaN 111205.1 NaN 19599 4313 23909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23916 94.641 NaN 3217000 35 0 827110 0.327 + 11135 IYIPSYFDF 9 87 582.7843070882576 1163.5540612433151 2 582.7846069335938 MULTI HCD FTMS 0 0 0 23915 1540758.75 0.8323254010548581 2 -0.0590972900390625 1 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 170.55093314911917 3.526520053928E-09 1 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}] + + 85.856 22.218 8.0459 7.3788 7.3788 65.812 0 0 0 0 58.68492477849584 0 0 0 2.805462187404089 0 1.7491348669726232 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.3788 + + 766 + NaN NaN 568848.2 NaN 19600 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23917 94.645 NaN 803730 35 0 136680 0.261 -1 0 75 593.7753528460964 1185.5361527589928 2 593.7755737304688 MULTI HCD FTMS 0 0 0 23915 227430.515625 0.7539011542873255 1 -0.03282928466796875 2 NaN NaN 1 {I|L}Y{I|L}P 4 -1 54.68 0 0 4.6123 0 0 0 696.2298067682249 696.2298067682249 34.318970284316435 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 {I|L}Y{I|L}P 4.6123 - 137 + NaN NaN 200905.8 NaN 19601 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23918 94.649 NaN 667100 35 0 97774 0.261 -1 LLSYMDVLM 9 69 558.767671214743 NaN 0 558.7843627929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Oxidation (M) _LLSYM(Oxidation (M))DVLM(Oxidation (M))_ ENST00000579186.1_1_17:30368040-30368955:+|nuORF 23.1484247019978 0.16626532474190622 1 {I|L}V{M(Oxidation (M))|F}DA 5 -1 29.553 0 0 2.6492 0 0 165.04634553496516 402.16645227603755 567.2127978110027 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 {I|L}V{M(Oxidation (M))|F}DA 2.6492 - 226 + NaN NaN 187163.8 NaN 19602 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23919 94.652 NaN 829940 35 0 173830 0.261 + 11277 IYLTFPVAMF 10 75 609.317515963484 1216.6204789937678 2 609.3175659179688 MULTI HCD FTMS 0 0 0 23915 245564.625 0.1612055163402061 -6 0.120635986328125 4 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 117.41 0 0 9.6507 9.6507 98.536 0 0 0 22.754537344402905 111.92844682815249 22.754537344402905 54.89236828338064 0 3.0138793319624577 1.6989700043360187 1.8169015600442577 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 9.6507;5.1389;4.6431;4.0717;3.8479 +;-;-;-;- + 479 NaN NaN 214465 NaN 19603 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23920 94.656 NaN 405660 35 0 66736 0.261 + 35518 YYGDVIWVI 9 49 564.2922018579845 1126.569850782769 2 564.2924194335938 MULTI HCD FTMS 0 0 0 23915 129658.46875 0.5499276086835649 -2 0.0357666015625 5 Unmodified _YYGDVIWVI_ ENSG00000196821|ENST00000374023|ILRUN;ENST00000453101.1_1_2:106961501-106961627:+|nuORF 21.74664581756881 0.17247014374749275 1 M{I|L}WV{I|L} 5 5 45.433 0 0 4.0329 0 0 466.2065602033219 0 466.2065602033219 0 38.44335023848103 0 0 0 1.3494850021680094 0 0 0 M{I|L}WV{I|L} 4.0329 - 54 NaN NaN 156320.7 NaN 19604 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23921 94.659 NaN 331610 35 0 29415 0.261 + 7017 FPYPLQWSL 9 68 575.8005980124475 1149.586643091695 2 575.8004760742188 MULTI HCD FTMS 0 0 0 23915 77944.3046875 0.3399389744238698 8 -0.24506378173828125 6 Unmodified _FPYPLQWSL_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 43.77239144664712 0.04802738721622131 1 EQWS{I|L} 5 5 50.534 0 0 4.3958 0 0 488.2655201642594 0 488.2655201642594 0 17.526202187463085 0 0 0 1.3807196863200843 0 0.3054621874040891 0.2614393726401688 EQWS{I|L} 4.3958 - 647 NaN NaN 134638 NaN 19605 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23922 94.662 NaN 186750 35 0 30048 0.261 + 18050 MLSPDHATF 9 45 509.736040933188 1017.457528933176 2 509.7365417480469 MULTI HCD FTMS 0 0 0 23915 61166.484375 0.40567882266293637 -3 0.06195831298828125 7 Unmodified _MLSPDHATF_ REV__ENSG00000214357|ENST00000369800|NEURL1B;REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B 12.531546534597751 0.2520865569484384 1 {I|L}DD{M(Oxidation (M))|F}PE 6 -1 28.505 0 0 2.8016 0 0 283.1156178205094 0 283.1156178205094 0 6.515318870489466 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {I|L}DD{M(Oxidation (M))|F}PE 2.8016 - 12 NaN NaN 116685.7 NaN 19606 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23923 94.666 NaN 199770 35 0 36279 0.261 -1 0 55 523.7804033220552 1045.5462537109104 2 523.7800903320312 MULTI HCD FTMS 0 0 0 23915 40725.4921875 0.37206615485824607 -6 0.120635986328125 8 NaN NaN 1 {I|L}{M(Oxidation (M))|F}R{I|L}{I|L}D 6 -1 44.09 0 0 4.217 0 0 0 285.0841463678344 285.0841463678344 22.40778928100886 0 0 0 0 1.4564608101803795 0 0.3494850021680094 0 {I|L}{M(Oxidation (M))|F}R{I|L}{I|L}D 4.217 - 184 + NaN NaN 127289.1 NaN 19607 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23924 94.669 NaN 240830 35 0 17736 0.261 -1 SYIFMPFSF 9 57 577.7649230958909 1153.5152932585818 2 578.7687377929688 MULTI HCD FTMS 0 0 0 23915 19839.947265625 0.4976608396853593 8 -0.24506378173828125 9 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F} 1 -1 10.63 0 0 0.92149 0 0 510.24730117049427 493.2090704165929 1003.4563715870872 0 0 0 0 0 0.7134679910804405 0 0 0 {M(Oxidation (M))|F} 0.92149 + + 41 + NaN NaN 143067.9 NaN 19608 4314 23915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23926 94.674 NaN 564870 35 0 79366 0.327 + 34495 YPFLLVGDLM 10 62 592.3074092060276 1182.6002654788551 2 592.3074340820312 MULTI HCD FTMS 0 0 0 23925 196659.9375 0.26398646911189705 9 -0.25792694091796875 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 112.59319219568356 4.798275876566979E-05 1 [Y{I|L}]SW{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 9 6 + 86.15 0 0 7.2848 7.2848 95.858 0 0 0 3.49239948601209 60.20812200728862 3.49239948601209 86.15024697793565 0 1.7302046884880937 1.5228787452803376 1.5994850021680094 0 [Y{I|L}]SW{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 7.2848 - 656 NaN NaN 172657.2 NaN 19609 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23927 94.678 NaN 394720 35 0 52481 0.261 + 34010 YLYYLPFL 8 64 546.2926317335485 1090.570710533897 2 546.783447265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YLYYLPFL_ REV__ENSG00000104804|ENST00000221399|TULP2 17.086550045450526 0.4680768486079041 1 G{I|L}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VG{M(Oxidation (M))|F} 8 -1 32.652 0 0 2.994 0 0 192.1030115824331 0 192.1030115824331 0 4.569400253826785 0 0 0 0 0 0 0 G{I|L}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VG{M(Oxidation (M))|F} 2.994 - 405 + NaN NaN 147691.4 NaN 19610 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23928 94.682 NaN 81575 35 0 15093 0.261 + 33556 YILDNNHTHL 10 32 620.308397700201 1238.602242467202 2 620.3082885742188 MULTI HCD FTMS 0 0 0 23925 56317.07421875 0.3991231465092628 -3 0.06859588623046875 3 Unmodified _YILDNNHTHL_ ENSG00000144481|ENST00000324695|TRPM8 13.042465956692817 0.38911719078024076 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 6 51.466 0 0 4.1552 0 0 0 598.2352999322874 598.2352999322874 50.35666875892183 0 0 0 0 0.9247425010840047 2 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 4.1552 - 20 + NaN NaN 100102.1 NaN 19611 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23929 94.685 NaN 94194 35 0 9314.2 0.264 + 32761 WRNRQKNKRR 10 44 481.2835868482356 1440.8289311449068 3 481.6181945800781 MULTI HCD FTMS 0 0 0 23925 17592.875 0.11340519040882792 -33 0.6710128784179688 4 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102023.7 NaN 19612 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23930 94.688 NaN 121960 35 0 20502 0.261 + 3233 EDMLEGHSRE 10 38 601.7584774905066 1201.5024020478131 2 601.7590942382812 MULTI HCD FTMS 0 0 0 23925 14959.125 0.4354340245482649 4 -0.12355804443359375 5 Unmodified _EDMLEGHSRE_ ENSG00000180787|ENST00000318833|ZFP3 5.731851221503515 0.44496410492002586 1 WN 2 10 16.198 0 0 1.3481 0 0 883.3870256052562 0 883.3870256052562 0 10.713337517843655 0 0 0 0 0 0 0 WN 1.3481 - 9 NaN NaN 99343.9 NaN 19613 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23931 94.692 NaN 116290 35 0 31860 0.263 + 32937 YAIDRQSG 8 38 455.22535138389844 NaN 0 455.22515869140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YAIDRQSG_ REV__ENSG00000108510|ENST00000397786|MED13;REV__MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 6.354104778181461 0.38822285293237185 1 A 1 -1 5.4846 0 0 0.60374 0 0 702.330648591236 132.04535852603752 834.3760071172735 0 0 0 0 0 0 0 0 0 A 0.60374 + + 5 + NaN NaN 112654.6 NaN 19614 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23932 94.695 NaN 46028 35 0 3781.6 0.261 + -1 QGRAFHCAFD 10 32 604.7669120245725 1207.519271115945 2 604.767333984375 MULTI HCD FTMS 0 0 0 23925 26304.3828125 0.8412128095684006 3 -0.0906829833984375 7 Carbamidomethyl (C) _QGRAFHC(Carbamidomethyl (C))AFD_ REV__ENSG00000095574|ENST00000368886|IKZF5 2.9952420565917617 0.4594494122822477 1 A{[{M(Oxidation (M))|F}D]|MM} 3 -1 7.4473 0 0 0.61674 0 0 856.3772555903575 0 856.3772555903575 0 5.853481135844875 0 0 0 0 0 0 0 A{[{M(Oxidation (M))|F}D]|MM} 0.61674 + + 7 + NaN NaN 103673.6 NaN 19615 4315 23925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23934 94.7 NaN 1573000 35 0 350920 0.327 + 26848 SYILDTLVF 9 68 535.7921219142498 1069.5696908952996 2 535.7922973632812 MULTI HCD FTMS 0 0 0 23933 1129570.5 1 0 0 1 Unmodified _SYILDTLVF_ ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000105576|O14787-2|TNPO2;TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant 171.46704133333822 3.0280501322097084E-09 1 [{I|L}V]TYDT{I|L}V{M(Oxidation (M))|F} 9 4 + 97.986 0 0 9.1613 9.1613 89.329 0 0 0 4.955678082598922 15.737862141609185 4.955678082598922 2.2885593051641706 0 2.3494850021680094 1.3010299956639813 1.7658715643802767 0 [{I|L}V]TYDT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TDYT{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]ESYT{I|L}V{M(Oxidation (M))|F};[{I|L}V]SEYT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TYDT[{M(Oxidation (M))|F}V]{I|L};[{I|L}V]TDYT[{M(Oxidation (M))|F}V]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}DT[{M(Oxidation (M))|F}V]{I|L};[{I|L}V]SEYT[{M(Oxidation (M))|F}V]{I|L};[{I|L}V]ESYT[{M(Oxidation (M))|F}V]{I|L} 9.1613;8.9473;8.698;8.6659;8.6659;5.5847;5.3708;5.1214;5.0893;5.0893 -;-;+;-;-;-;-;-;-;- + 674 NaN NaN 317446.1 NaN 19616 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23935 94.705 NaN 788260 35 0 129730 0.261 + 1296 AYNDNWFITF 10 75 645.7924385314823 1289.5703241297645 2 645.793212890625 MULTI HCD FTMS 0 0 0 23933 360166.0625 0.034782663438392286 16 -0.40777587890625 2 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 103.82355648334675 5.879419037132958E-05 1 NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6 4 85.464 0 0 6.6273 0 0 463.1701832501969 0 463.1701832501969 0 65.63100339696028 0 0 0 2.5 0 0 1.9802046884880937 + NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6.6273 + + 418 NaN NaN 204920.5 NaN 19617 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23936 94.708 NaN 537560 35 0 29443 0.264 + 30980 VSAIHKLMRWI 11 88 451.93248683120106 1352.7756310938032 3 451.9326477050781 MULTI HCD FTMS 0 0 0 23933 469947.40625 0.6544730580211777 27 -0.6391220092773438 3 Unmodified _VSAIHKLMRWI_ ENSG00000164077|ENST00000296473|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A 2.6312355333042263 0.4073809613003177 1 N{[HG]|PP}N 4 10 15.662 0 0 1.1578 0 0 912.5115833966812 0 912.5115833966812 0 6.682437647924218 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.1578 - 146 NaN NaN 178871.6 NaN 19618 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23937 94.711 NaN 356100 35 0 41947 0.261 + 5793 FPATVLWEL 9 60 538.2945059117986 1074.5744588903972 2 538.2943115234375 MULTI HCD FTMS 0 0 0 23933 146391.578125 0.3269330729889647 -4 0.0948638916015625 4 Unmodified _FPATVLWEL_ ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;nc|ENSG00000155363|Q9HCE1-2|MOV10 37.97399986684836 0.07464525285885698 1 {I|L}WE{I|L} 4 5 41.983 0 0 3.9069 0 0 515.2802601544937 0 515.2802601544937 0 9.235162698957282 0 0 0 1.305462187404089 0 0 0 + {I|L}WE{I|L} 3.9069 + + 82 NaN NaN 140155.6 NaN 19619 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23938 94.715 NaN 199020 35 0 37387 0.261 + 6112 FPEGLFYEF 9 54 574.7687124378033 NaN 0 574.7684326171875 PEAK HCD FTMS 0 0 0 23933 89082.6171875 0.05661508833097245 37 -0.8681488037109375 5 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 30.636539890814138 0.11600348607007434 1 EY{M(Oxidation (M))|F} 3 6 36.427 0 0 3.1744 0 0 165.07863051582189 540.2466865830263 705.3253170988482 0 0 0 0 0 2 0 0.5 0 EY{M(Oxidation (M))|F} 3.1744 - 60 NaN NaN 131221.9 NaN 19620 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23939 94.718 NaN 130810 35 0 37715 0.264 + -1 VTLCYCFARI 10 53 434.8822917577709 NaN 0 434.88226318359375 PEAK HCD FTMS 0 0 0 23933 68925.53125 0.6503879267511257 33 -0.8044662475585938 6 2 Carbamidomethyl (C) _VTLC(Carbamidomethyl (C))YC(Carbamidomethyl (C))FARI_ REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF 1.7422754331352037 0.33869314273211465 1 {I|L} 1 -1 5.4846 0 0 0.63204 0 0 153.3905467950355 598.2519625299436 751.6425093249791 0 0 0 0 0 0 0 0 0 {I|L} 0.63204 + + 1 + NaN NaN 110721.2 NaN 19621 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23940 94.721 NaN 342360 35 0 69928 0.261 -1 0 49 504.79084351525756 1007.5671340973151 2 504.7908630371094 MULTI HCD FTMS 0 0 0 23933 80333.71875 0.4758677525926554 -2 0.0590972900390625 7 NaN NaN 1 {I|L}PAD 4 -1 54.034 0 0 5.3628 0 0 0 608.3449190729124 608.3449190729124 45.62235206668652 0 0 0 0 0.7134679910804405 1.6989700043360187 0.4247425010840047 0 {I|L}PAD 5.3628 - 42 + NaN NaN 132251.6 NaN 19622 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23941 94.725 NaN 139460 35 0 12510 0.261 + 26599 SVVLWAVAL 9 42 479.29213885493255 956.5697247766651 2 479.2921142578125 MULTI HCD FTMS 0 0 0 23933 56684.69921875 0.705843380051721 4 -0.12686920166015625 8 Unmodified _SVVLWAVAL_ ENSG00000167769|ENST00000301452|ACER1 21.74664581756881 0.17247014374749275 1 AVA{I|L} 4 5 37.467 0 0 3.9168 0 0 584.331346580275 0 584.331346580275 0 21.269184659718547 0 0 0 1.305462187404089 0 0 0 + AVA{I|L} 3.9168 + + 128 NaN NaN 107210.5 NaN 19623 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23942 94.728 NaN 79264 35 0 6869.2 0.261 + 26279 SRDYNPYNYS 10 34 639.7745971679688 NaN 0 639.7745971679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SRDYNPYNYS_ ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2 1.7422754331352037 0.33869314273211465 1 {I|L} 1 10 3.0989 0 0 0.24276 0 0 656.2185359357437 504.23456751041255 1160.4531034461563 0 0 0 0 0 0 0 0 0 {I|L} 0.24276 - 1 + NaN NaN 92447.6 NaN 19624 4316 23933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23944 94.733 NaN 863930 35 0 199980 0.327 -1 LFNLIDTF 8 52 512.772193206248 NaN 0 512.7894287109375 PEAK HCD FTMS 0 0 0 23943 18980.166015625 0.3880549757843124 -3 0.09206390380859375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFNLIDTF_ ENSG00000101955|ENST00000378533|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;SRPX|p.R448G|1|0.11|ENSG00000101955|chrX:38149764-38149764|T/C|missense_variant 32.116972079565 0.3772972708913157 1 {I|L}{I|L}DT 4 -1 30.165 0 0 2.9472 0 0 416.20811669952167 162.05605493717033 578.264171636692 0 0 0 0 0 0 0 1.274227503252014 0 {I|L}{I|L}DT 2.9472 + + 53 + NaN NaN 217543.8 NaN 19625 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23945 94.737 NaN 237210 35 0 24970 0.261 + 31425 VYASLGALLF 10 68 527.3026184396423 1052.5906839460845 2 527.3027954101562 MULTI HCD FTMS 0 0 0 23943 157701.53125 0.34483171201911755 7 -0.19869232177734375 2 Unmodified _VYASLGALLF_ ENSG00000178719|ENST00000395068|GRINA;ENST00000533377.1_1_8:145066406-145067006:+|nuORF 88.90359156742426 0.0010865658313541904 1 S{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F} 7 3 66.834 0 0 6.3494 0 0 333.16865737129064 0 333.16865737129064 0 56.03154177741963 0 0 0 2.504432191740108 0 0.75 0 + S{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F} 6.3494 + + 857 NaN NaN 115649.6 NaN 19626 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23946 94.743 NaN 474830 35 0 42623 0.261 + 5855 FPDFPTPGVVF 11 56 611.8110689456707 1221.6075849581414 2 611.8106689453125 MULTI HCD FTMS 0 0 0 23943 100109.8046875 0.016178045905678624 -34 0.7210693359375 3 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 16.149105407346934 0.31637472687818013 1 WV{M(Oxidation (M))|F} 3 9 31.198 0 0 2.5538 0 0 771.3903065412125 0 771.3903065412125 0 22.965978039238735 0 0 0 0.5 0 0 0 WV{M(Oxidation (M))|F} 2.5538 - 34 NaN NaN 178391.3 NaN 19627 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23947 94.746 NaN 251300 35 0 28516 0.261 -1 SYIFMPFSF 9 62 577.7649230958909 1153.5152932585818 2 577.7649536132812 MULTI HCD FTMS 0 0 0 23943 34543.66796875 0.19814439946321274 11 -0.2866668701171875 4 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 10.073929032068715 0.27331982688540024 1 [Y{I|L}][YG]{M(Oxidation (M))|F} 5 -1 21.483 0 0 1.8624 0 0 0 507.2264498350068 507.2264498350068 11.561734207603747 0 0 0 0 0.7302046884880938 1.2218487496163564 0 0 [Y{I|L}][YG]{M(Oxidation (M))|F} 1.8624 - 171 NaN NaN 122050.8 NaN 19628 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23948 94.75 NaN 70384 35 0 13408 0.261 -1 PGVLHPHCDF 10 39 589.7738036940649 1177.5330544549297 2 589.77294921875 MULTI HCD FTMS 0 0 0 23943 40965.88671875 0.6696241031466871 6 -0.1758270263671875 5 Carbamidomethyl (C) _PGVLHPHC(Carbamidomethyl (C))DF_ ENST00000546415.1_1_12:45268930-45269664:-|nuORF 6.723162845929126 0.4397169348982109 1 C(Carbamidomethyl (C))D{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.5216 0 0 737.40727431465 0 737.40727431465 0 17.81357210935475 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C))D{M(Oxidation (M))|F} 2.5216 + + 48 NaN NaN 95433.7 NaN 19629 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23949 94.753 NaN 172240 35 0 12211 0.261 + 6814 FPSIGTLCLF 10 48 549.2862305613253 1096.5579081894505 2 549.2864379882812 MULTI HCD FTMS 0 0 0 23943 21313.68359375 0.2653631942429501 -6 0.154022216796875 6 Unmodified _FPSIGTLCLF_ REV__ENSG00000072195|ENST00000312358|SPEG;REV__nc|ENSG00000072195|Q15772-1|SPEG;REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant 15.847184025352803 0.36288280428275715 1 {M(Oxidation (M))|F}PA{[TV]|[{I|L}S]}{I|L}[CS]{I|L}{M(Oxidation (M))|F} 10 -1 + 27.221 0 0 2.4824 2.4824 86.083 0 0 0 4.313929935651668 2.65153777800478 2.65153777800478 15.740312677277188 0 0.28872548999643577 0 0 0 {M(Oxidation (M))|F}PA{[TV]|[{I|L}S]}{I|L}[CS]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}PA{[TV]|[{I|L}S]}{I|L}[YG]{[ET]|[MV]} 2.4824;1.047 -;- 67 + NaN NaN 116947.8 NaN 19630 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23950 94.756 NaN 83839 35 0 12120 0.261 -1 0 32 632.2969288191402 631.2896523525402 1 632.2969360351562 MULTI HCD FTMS 0 0 0 23943 42849.86328125 0.33450094139677033 -3 0.09206390380859375 7 NaN NaN 1 M 1 -1 4.6041 0 0 0.72932 0 0 53.9269337019527 443.29905115299067 497.22598485494336 0 0 0 0 0 0 0 0 0 M 0.72932 - 2 + NaN NaN 98870.1 NaN 19631 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23951 94.76 NaN 95270 35 0 6360.1 0.264 + 12710 KWWKWLRRR 9 49 472.28329830657447 1413.8280655199235 3 472.61846923828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KWWKWLRRR_ REV__ENST00000461642.2_1_20:25470551-25477423:-|nuORF 0.9622753412299311 0.3437222896773173 1 [Y{I|L}][PA]A{I|L}W 7 -1 28.204 0 0 1.9949 0 0 0 596.378943776036 596.378943776036 23.60038831858624 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}][PA]A{I|L}W 1.9949 - 24 NaN NaN 104829.9 NaN 19632 4317 23943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23953 94.764 NaN 873460 35 0 267660 0.327 + 6288 FPFNPLDF 8 61 498.74486209914005 995.4751712650801 2 498.7450256347656 MULTI HCD FTMS 0 0 0 23952 617170.3125 0.850148226933136 1 -0.03287506103515625 1 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 46.020951573049366 0.15358337540685318 1 NP{I|L}D{M(Oxidation (M))|F} 5 3 53.756 0 0 5.4 0 0 391.1886158673844 0 391.1886158673844 0 19.943415770716157 0 0 0 1.8807196863200843 0 0 0 + NP{I|L}D{M(Oxidation (M))|F} 5.4 + + 248 NaN NaN 206765.5 NaN 19633 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23954 94.769 NaN 1404500 35 0 220660 0.261 + 6059 FPDYLVIQI 9 70 554.3078377963003 1106.6011226594005 2 554.3079833984375 MULTI HCD FTMS 0 0 0 23952 767813.9375 0.6768000644349917 3 -0.08531951904296875 2 Unmodified _FPDYLVIQI_ ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;ENST00000541969.1_1_12:6969646-6972391:+|nuORF;nc|ENSG00000111667|P45974-2|USP5 62.57269311338072 0.013982455292112035 1 Y{I|L}V{I|L}Q{I|L} 6 3 58.633 0 0 5.2985 0 0 359.1473561017594 0 359.1473561017594 0 41.63811573052314 0 0 0 1.8494850021680094 0 0 0.4247425010840047 + Y{I|L}V{I|L}Q{I|L} 5.2985 + + 159 NaN NaN 297308 NaN 19634 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23955 94.772 NaN 1006000 35 0 318950 0.261 + 10414 IPADIVFVL 9 48 493.79968230260863 985.5848116720173 2 493.7997131347656 MULTI HCD FTMS 0 0 0 23952 798733.3125 0.7488562125014723 -2 0.06441497802734375 3 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 1 V{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.6861 0 0 509.28456657579625 0 509.28456657579625 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.6861 + + 24 NaN NaN 241822.5 NaN 19635 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23956 94.776 NaN 517310 35 0 95888 0.261 + 5961 FPDQFFTVL 9 67 557.2844699053602 1112.5543868775203 2 557.2843017578125 MULTI HCD FTMS 0 0 0 23952 227504.953125 0.7530125535216844 -2 0.06441497802734375 4 Unmodified _FPDQFFTVL_ ENSG00000186020|ENST00000591340|ZNF529;ENST00000334116.7_2_19:37042871-37064163:-|nuORF 33.4449034751529 0.0954363425218424 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}TV{I|L} 5 4 53.175 0 0 4.7796 0 0 487.2064381330094 0 487.2064381330094 0 13.329824663958547 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}TV{I|L} 4.7796 + + 543 NaN NaN 160703.9 NaN 19636 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23957 94.779 NaN 108640 35 0 9162.8 0.263 + 8032 GGHVYGLF 8 45 425.214643955245 NaN 0 425.2146911621094 PEAK HCD FTMS 0 0 0 23952 28685.072265625 0.4002006458904406 1 -0.03287506103515625 5 Unmodified _GGHVYGLF_ ENST00000262644.8_1_8:57871124-57871475:-|nuORF 6.354104778181461 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94168 NaN 19637 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23958 94.782 NaN 216960 35 0 17174 0.261 + 31962 VYPGLAVFF 9 47 506.77887089011085 1011.5431888470217 2 506.7789306640625 MULTI HCD FTMS 0 0 0 23952 63586.67578125 0.039967030210029585 18 -0.41827392578125 6 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 56.04830969593885 0.023109620888794903 1 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 49.68 0 0 4.9114 0 0 529.2905428440832 0 529.2905428440832 0 38.7113751626007 0 0 0 1.9247425010840047 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9114 + + 66 + NaN NaN 116884.3 NaN 19638 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23959 94.786 NaN 154350 35 0 20592 0.261 + -1 FTVLYMATT 9 52 531.76254533749 1061.51053774178 2 531.7623291015625 MULTI HCD FTMS 0 0 0 23952 25526.919921875 0.7852786586857318 -2 0.06441497802734375 7 Oxidation (M) _FTVLYM(Oxidation (M))ATT_ REV__ENSG00000165186|ENST00000379361|PTCHD1;REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1 11.640296217721598 0.25978676193971967 1 AEE 3 -1 23.456 0 0 2.2096 0 0 714.367967674025 0 714.367967674025 0 2.4865124202832334 0 0 0 0 0 0.4247425010840047 0 AEE 2.2096 - 17 NaN NaN 107657.5 NaN 19639 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23960 94.789 NaN 155520 35 0 25138 0.261 + 10197 IFYRDVLMF 9 39 602.3136763354968 1202.6127997377935 2 602.814453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _IFYRDVLMF_ ENST00000529428.5_1_16:30291089-30291220:-|nuORF 9.38312468134398 0.279288223203164 1 M 1 8 3.9794 0 0 0.3309 0 0 655.261799837206 413.2900484674438 1068.5518483046499 0 0 0 0 0 0 0 0 0 + M 0.3309 + + 3 + NaN NaN 106819.6 NaN 19640 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23961 94.792 NaN 73589 35 0 7538.3 0.262 -1 WLNKLMKLLQR 11 44 486.9590036169928 1457.8551814511784 3 486.95880126953125 MULTI HCD FTMS 0 0 0 23952 26901.25390625 0.31403245221629617 -18 0.43475341796875 9 Oxidation (M) _WLNKLM(Oxidation (M))KLLQR_ ENSG00000068878|ENST00000404125|PSME4 0.4545168274142398 0.41692731010159206 1 P 1 -1 1.7827 0 0 0.12228 0 0 990.5827337966847 367.19745813541255 1357.7801919320973 0 0 0 0 0 0 0 0 0 P 0.12228 - 1 + NaN NaN 92246.4 NaN 19641 4318 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23963 94.797 NaN 2386900 35 0 644520 0.327 + 11278 IYLTFPVAMF 10 81 609.317515963484 1216.6204789937678 2 609.317626953125 MULTI HCD FTMS 0 0 0 23962 1022882.3125 0.6714903310760927 -1 0.03287506103515625 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 162.95088124538222 7.72408794244308E-11 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 126.74 0 0 10.418 10.418 91.364 0 0 0 22.754537344402905 94.73492200483189 22.754537344402905 4.731975075880314 0 3.138210492164445 1.6989700043360187 2.3243923658886185 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}Y{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVY{[DS]|[MA]|[CV]|TT};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10.418;10.029;9.1892;7.05;5.93;5.3775;4.7484 +;-;-;-;-;-;- + 1207 NaN NaN 443312.5 NaN 19642 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23964 94.802 NaN 926490 35 0 198400 0.261 + 11136 IYIPSYFDF 9 68 582.7843070882576 1163.5540612433151 2 582.7844848632812 MULTI HCD FTMS 0 0 0 23962 378345.65625 0.2043841711595957 7 -0.17346954345703125 2 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 104.79918948944588 0.003791450360204016 1 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}]{I|L} + + 60.341 27.447 7.0517 5.1859 5.1859 61.911 0 0 0 0 29.908037477650637 0 0 0 2.1747425010840047 0 1 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.1859 + + 208 + NaN NaN 220233.2 NaN 19643 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23965 94.805 NaN 306560 35 0 51916 0.261 -1 0 56 548.345952256212 547.3386757896119 1 548.3338012695312 MULTI HCD FTMS 0 0 0 23962 10403.0087890625 0.08332009672397438 -7 0.1921539306640625 3 NaN NaN 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 4.5114 0 0 122.10715220738378 0 122.10715220738378 0 17.703037561203843 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.5114 - 31 + NaN NaN 129038.7 NaN 19644 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23966 94.809 NaN 126950 35 0 43163 0.261 + 33104 YDTAEDEFI 9 33 551.7328546414715 1101.4511563497429 2 551.7329711914062 MULTI HCD FTMS 0 0 0 23962 55208.98828125 0.13446114131799783 7 -0.17346954345703125 4 Unmodified _YDTAEDEFI_ tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.3577 0 0 823.2852122258406 0 823.2852122258406 0 18.979400086720375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.3577 + + 6 NaN NaN 104223.5 NaN 19645 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23967 94.812 NaN 256780 35 0 34175 0.261 + 5917 FPDLPFTDEL 10 50 597.2900352759292 NaN 0 597.2897338867188 PEAK HCD FTMS 0 0 0 23962 108305.8984375 0.5135410248864762 13 -0.31048583984375 5 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 53.832793166522166 0.06576113505193269 1 EDP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 6 6 36.872 0 0 3.0918 0 0 131.09460210827257 372.1409090631469 503.2355111714195 0 0 0 0 0 1.274227503252014 0 1.110924374808178 0 EDP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3.0918 - 64 + NaN NaN 136906.7 NaN 19646 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23968 94.815 NaN 184830 35 0 10949 0.263 -1 RVLPCGKKKVW 11 57 457.6082332782322 1369.8028704348967 3 457.6080017089844 MULTI HCD FTMS 0 0 0 23962 141881.90625 0.4918982665222102 45 -1.012054443359375 6 Carbamidomethyl (C) _RVLPC(Carbamidomethyl (C))GKKKVW_ ENST00000418154.1_1_1:64254543-64254969:-|nuORF 0.4545168274142398 0.41692731010159206 1 K 1 -1 3.0989 0 0 0.22623 0 0 955.557010896452 283.11924158267817 1238.6762524791302 0 0 0 0 0 0 0 0 0 K 0.22623 + + 3 + NaN NaN 119439.1 NaN 19647 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23969 94.819 NaN 292500 35 0 37465 0.261 + 33832 YLKDFNYIL 9 69 594.8187217079366 1187.622890482673 2 594.8189086914062 MULTI HCD FTMS 0 0 0 23962 60778.87890625 0.30584843148672824 -1 0.03287506103515625 7 Unmodified _YLKDFNYIL_ tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1 19.256988751693697 0.19398022840297344 1 E{M(Oxidation (M))|F}Y{I|L}{I|L} 5 5 43.443 0 0 3.658 0 0 504.27250868965 0 504.27250868965 0 19.006375246153908 0 0 0 1 0 0 0 E{M(Oxidation (M))|F}Y{I|L}{I|L} 3.658 - 94 NaN NaN 126818.9 NaN 19648 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23970 94.822 NaN 95278 35 0 11221 0.261 + 13478 KYPENFFLL 9 39 585.8133937022669 1169.6122344713337 2 585.8134155273438 MULTI HCD FTMS 0 0 0 23962 60451.32421875 0.6067075802678515 7 -0.17346954345703125 8 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.445 0 0 2.603 0 0 778.3647938459 0 778.3647938459 0 25.84121882396211 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.603 + + 8 NaN NaN 94454 NaN 19649 4319 23962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23972 94.827 NaN 486150 35 0 48943 0.327 + 18021 MLLHADGDF 9 69 509.736040933188 1017.457528933176 2 509.7358703613281 MULTI HCD FTMS 0 0 0 23971 108082.8671875 0.7168456836891652 3 -0.0819244384765625 1 Unmodified _MLLHADGDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 16.942295170755138 0.21397866736869717 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VVA{I|L}M 8 -1 34.045 0 0 3.3461 0 0 0 109.96971090022603 109.96971090022603 13.24790600323611 0 0 0 0 0.9826446478103829 2 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VVA{I|L}M 3.3461 - 315 NaN NaN 156387.3 NaN 19650 4320 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23973 94.831 NaN 210190 35 0 32632 0.261 + 33816 YLITDQAETVS 11 52 620.308397700201 1238.602242467202 2 620.3084716796875 MULTI HCD FTMS 0 0 0 23971 128899.734375 0.9135216678360335 2 -0.0590972900390625 2 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 24.990960013464015 0.23933535780272686 1 [Y{I|L}]{I|L}TV{[YC]|[HE]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 + 63.554 0 0 5.1311 5.1311 88.684 0 0 0 3.791615863770872 50.59562510389476 3.791615863770872 14.707450452114799 0 1.9247425010840047 1.6989700043360187 0.3494850021680094 0 [Y{I|L}]{I|L}TV{[YC]|[HE]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}][Y{I|L}];[Y{I|L}]{I|L}[CS]{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[Y{I|L}];YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}[VP][Y{I|L}] 5.1311;3.9437;2.3439;0.47996 -;-;-;- 155 NaN NaN 109967.7 NaN 19651 4320 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23974 94.835 NaN 261980 35 0 30526 0.261 + 35519 YYGDVIWVI 9 45 564.2922018579845 1126.569850782769 2 564.2921752929688 MULTI HCD FTMS 0 0 0 23971 95594.640625 0.4054508172793072 4 -0.10478973388671875 3 Unmodified _YYGDVIWVI_ ENSG00000196821|ENST00000374023|ILRUN;ENST00000453101.1_1_2:106961501-106961627:+|nuORF 21.74664581756881 0.17247014374749275 1 {I|L}WV{I|L} 4 5 40.191 0 0 3.5675 0 0 597.2413807599625 0 597.2413807599625 0 24.706225184280797 0 0 0 0.8252574989159953 0 0 0 + {I|L}WV{I|L} 3.5675 + + 45 NaN NaN 117847.6 NaN 19652 4320 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23975 94.838 NaN 159240 35 0 20797 0.261 + 32762 WRNRQKNKRR 10 54 481.2835868482356 1440.8289311449068 3 481.2838134765625 MULTI HCD FTMS 0 0 0 23971 109279.6875 0.7525869065222908 -16 0.3858642578125 4 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 1 R 1 9 0.48455 0 0 0.03363 0 0 1142.6622574161943 139.0412996881469 1281.7035571043411 0 0 0 0 0 0 0 0 0 + R 0.03363 + + 3 + NaN NaN 109129.1 NaN 19653 4320 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23976 94.842 NaN 507840 35 0 67642 0.261 + 15110 LMIYRFCL 8 69 529.7804415377702 1057.5463301423404 2 529.7808837890625 MULTI HCD FTMS 0 0 0 23971 189587.0625 0.5380297678328971 -6 0.18596649169921875 5 Unmodified _LMIYRFCL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense 24.67388899826682 0.4122521268485776 1 {I|L}M{I|L}AEV{M(Oxidation (M))|F} 7 5 90.948 0 0 8.5999 0 0 0 251.1015566461547 251.1015566461547 71.90691362661326 0 0 0 0 2.223197507588033 2 0.7614393726401688 0 {I|L}M{I|L}AEV{M(Oxidation (M))|F} 8.5999 - 832 + NaN NaN 152886.5 NaN 19654 4320 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23977 94.845 NaN 155030 35 0 13043 0.261 + 7491 FWDTSPLLL 9 57 546.2926317335485 1090.570710533897 2 546.7830200195312 MULTI HCD FTMS 0 0 0 23971 13643.013671875 0.6593881413229934 2 -0.0590972900390625 6 Unmodified _FWDTSPLLL_ ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3 16.942295170755138 0.21397866736869717 1 {I|L}{I|L} 2 7 22.078 0 0 2.0245 0 0 846.3968983380875 0 846.3968983380875 0 1.1877186907143766 0 0 0 0.3494850021680094 0 0 0 + {I|L}{I|L} 2.0245 + + 189 NaN NaN 102702.4 NaN 19655 4320 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23979 94.85 NaN 1843500 35 0 187150 0.327 + 6424 FPIAEVFTL 9 90 518.78937621757 1035.5641995019398 2 518.7894897460938 MULTI HCD FTMS 0 0 0 23978 808218.625 0.4620079792004022 -5 0.1497344970703125 1 Unmodified _FPIAEVFTL_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 139.54400939418784 2.61670173137287E-05 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L} 9 0 + 87.004 0 0 8.4016 8.4016 93.559 0 0 0 11.760912590556813 16.478174818886373 11.760912590556813 11.760912590556813 0 2.1861818737241734 1.5228787452803376 0.7059771852360797 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L};[{I|L}P]{M(Oxidation (M))|F}AEV{M(Oxidation (M))|F}T{I|L};[{I|L}P]A{M(Oxidation (M))|F}EV{M(Oxidation (M))|F}T{I|L};[{I|L}P]AE{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV[{I|L}T]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PA]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEVV[YV];[{I|L}T]{M(Oxidation (M))|F}VEA{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[R{M(Oxidation (M))|F}]{I|L}M{I|L} 8.4016;7.2659;6.3168;5.8808;5.7404;5.533;5.3346;5.2797;4.9939;4.8395 +;-;-;-;-;-;-;-;-;- + 1430 NaN NaN 359370.3 NaN 19656 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23980 94.854 NaN 1112600 35 0 163160 0.261 + 6091 FPEEVIATIF 10 72 583.3103729426534 1164.6061929521068 2 583.3106079101562 MULTI HCD FTMS 0 0 0 23978 243690.984375 0.5333676618024067 1 -0.03623199462890625 2 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 47.748688679222035 0.08597705450879027 1 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 58.276 0 0 5.0039 0 0 601.2750412128005 0 601.2750412128005 0 12.437106056797376 0 0 0 2.1549471895720984 0 0.805462187404089 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 5.0039 + + 432 NaN NaN 248612.4 NaN 19657 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23981 94.858 NaN 517110 35 0 70425 0.261 + 5794 FPATVLWEL 9 58 538.2945059117986 1074.5744588903972 2 538.294677734375 MULTI HCD FTMS 0 0 0 23978 180600.796875 0.40333176445562385 1 -0.03623199462890625 3 Unmodified _FPATVLWEL_ ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;nc|ENSG00000155363|Q9HCE1-2|MOV10 58.678817012210395 0.019429721296335044 1 V{I|L}WE{I|L} 5 4 45.534 0 0 4.2374 0 0 416.2062245099625 0 416.2062245099625 0 33.96713777483761 0 0 0 1.6861818737241734 0 0 0 + V{I|L}WE{I|L} 4.2374 + + 92 NaN NaN 161648.4 NaN 19658 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23982 94.861 NaN 374580 35 0 19932 0.262 + 7074 FQVKLLYRMR 10 89 451.93248683120106 1352.7756310938032 3 451.9326171875 MULTI HCD FTMS 0 0 0 23978 276648.46875 0.3852749625420211 32 -0.718414306640625 4 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 3.3196427980023873 0.4577323075863651 1 Q 1 -1 9.732 0 0 0.71941 0 0 678.4035740643095 543.3023627187226 1221.705936783032 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.71941 + + 62 + NaN NaN 140595.8 NaN 19659 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23983 94.865 NaN 430130 35 0 72060 0.261 + 1297 AYNDNWFITF 10 48 645.7924385314823 1289.5703241297645 2 645.7933349609375 MULTI HCD FTMS 0 0 0 23978 150229.3125 0.014508239835252547 21 -0.46987152099609375 5 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 67.83816525789305 0.020146919733137328 1 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 55.701 0 0 4.3194 0 0 577.2122031284805 0 577.2122031284805 0 36.97743773147742 0 0 0 1.9247425010840047 0 0 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4.3194 + + 117 NaN NaN 150540.5 NaN 19660 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23984 94.868 NaN 309010 35 0 47402 0.261 + 34496 YPFLLVGDLM 10 45 592.3074092060276 1182.6002654788551 2 592.3074951171875 MULTI HCD FTMS 0 0 0 23978 138497.46875 0.18591207859123723 15 -0.33295440673828125 6 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 92.8221339359638 0.000785806387253049 1 {I|L}{I|L}VGD{I|L}{M(Oxidation (M))|F} 7 3 71.859 0 0 6.0764 0 0 407.18364150215 0 407.18364150215 0 66.3747229566247 0 0 0 2.3494850021680094 0 0.805462187404089 0 + {I|L}{I|L}VGD{I|L}{M(Oxidation (M))|F} 6.0764 + + 131 NaN NaN 129362.3 NaN 19661 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23985 94.871 NaN 239500 35 0 38106 0.261 -1 0 56 523.7804033220552 1045.5462537109104 2 523.780517578125 MULTI HCD FTMS 0 0 0 23978 70976.546875 0.6484383481313158 1 -0.03623199462890625 7 NaN NaN 1 {I|L}{M(Oxidation (M))|F}R{I|L}{I|L}D 6 -1 39.238 0 0 3.7528 0 0 0 285.0850924127563 285.0850924127563 12.599555848308277 0 0 0 0 1.4073871488943874 0 0.3252574989159953 0 {I|L}{M(Oxidation (M))|F}R{I|L}{I|L}D 3.7528 - 204 + NaN NaN 114890.7 NaN 19662 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23986 94.874 NaN 156120 35 0 10906 0.261 + 18615 MWFERSFS 8 46 545.2452591948072 1088.4759654564143 2 545.2450561523438 MULTI HCD FTMS 0 0 0 23978 44685.72265625 0.42266815897122617 -1 0.02286529541015625 8 Unmodified _MWFERSFS_ REV__ENST00000375740.7_1_6:31709024-31710713:+|nuORF 1.844237919475145 0.5392561982033289 1 P 1 -1 2.4743 0 0 0.22731 0 0 818.0217551066081 170.37317835025627 988.3949334568644 0 0 0 0 0 0 0 0 0 P 0.22731 - 2 + NaN NaN 102703.4 NaN 19663 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23987 94.878 NaN 117010 35 0 25719 0.261 + 6113 FPEGLFYEF 9 43 574.7687124378033 NaN 0 574.7687377929688 PEAK HCD FTMS 0 0 0 23978 54814.859375 0.034836741480479515 42 -0.9467315673828125 9 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 19.256988751693697 0.19238547928067054 1 EY{M(Oxidation (M))|F}E 4 6 32.691 0 0 2.8488 0 0 165.0803877777367 411.20429407291255 576.2846818506492 0 0 0 0 0 1.4247425010840047 0 0 0 EY{M(Oxidation (M))|F}E 2.8488 - 26 + NaN NaN 99652.5 NaN 19664 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23988 94.881 NaN 292550 35 0 61747 0.261 -1 0 58 521.1184089321105 NaN 0 521.1349487304688 PEAK HCD FTMS 0 0 0 23978 13233.755859375 0.9518851924423017 1 -0.03623199462890625 10 NaN NaN 1 {I|L} 1 -1 5.4846 0 0 0.52725 0 0 130.72691956376224 793.3841036432249 924.111023206987 0 0 0 0 0 0 0 0 0 {I|L} 0.52725 - 1 + NaN NaN 125235.2 NaN 19665 4321 23978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23990 94.886 NaN 717830 35 0 158490 0.327 -1 LFNLIDTF 8 53 512.772193206248 NaN 0 512.7894897460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFNLIDTF_ ENSG00000101955|ENST00000378533|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;SRPX|p.R448G|1|0.11|ENSG00000101955|chrX:38149764-38149764|T/C|missense_variant 32.116972079565 0.3772972708913157 1 {I|L}{I|L}DT 4 -1 27.155 0 0 2.653 0 0 416.2081587082477 162.05587183170158 578.2640305399493 0 0 0 0 0 0 0 1.274227503252014 0 {I|L}{I|L}DT 2.653 + + 71 + NaN NaN 196146.9 NaN 19666 4322 23989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23991 94.89 NaN 1440200 35 0 126160 0.261 + 5856 FPDFPTPGVVF 11 74 611.8110689456707 1221.6075849581414 2 611.8108520507812 MULTI HCD FTMS 0 0 0 23989 633198.9375 0.10232685509954867 -29 0.67327880859375 2 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 62.57269311338072 0.02978974163663469 1 {[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[WQ]PRV{M(Oxidation (M))|F} 9 6 + 43.316 0 0 3.5458 3.5458 88.828 0 0 0 5.820969234463007 18.219413281906778 5.820969234463007 43.31630024853916 0 1.1331596456423734 0 1.1549471895720984 0.2742275032520141 {[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[WQ]PRV{M(Oxidation (M))|F} 3.5458 - 221 NaN NaN 308764.7 NaN 19667 4322 23989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23992 94.894 NaN 1017900 35 0 87323 0.261 + 32027 VYPLYTIVF 9 79 557.8127021642706 1113.6108513953411 2 557.8129272460938 MULTI HCD FTMS 0 0 0 23989 334348.875 0.3955498276451042 -4 0.121551513671875 3 Unmodified _VYPLYTIVF_ ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP 93.88341677533236 0.004424206486747196 1 [YV][{I|L}P]YT{I|L}V{M(Oxidation (M))|F} 9 0 + 78.043 0 0 7.0081 7.0081 87.996 0 0 0 6.879839358585869 14.973024840566467 6.879839358585869 6.879839358585869 0 2.3494850021680094 1.2218487496163564 1.1237125054200234 0 + + [YV][{I|L}P]YT{I|L}V{M(Oxidation (M))|F};[{I|L}V]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]T{I|L}V{M(Oxidation (M))|F};[YV][{I|L}P][{I|L}T]YV{M(Oxidation (M))|F};[YV][{I|L}P]YVV[YV];[{I|L}V]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]VV[YV];[YV][{I|L}P][{I|L}T]{M(Oxidation (M))|F}[YV];[{I|L}V]T[DP][MT]{I|L}[KP] 7.0081;6.3903;3.7746;1.4042;0.78638;0.41455;0.32248 +;-;-;-;-;-;- + 540 NaN NaN 240836.7 NaN 19668 4322 23989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23993 94.897 NaN 504440 35 0 69333 0.261 + 15111 LMIYRFCL 8 65 529.7804415377702 1057.5463301423404 2 529.7804565429688 MULTI HCD FTMS 0 0 0 23989 247340.09375 0.7019272911413958 -4 0.121551513671875 4 Unmodified _LMIYRFCL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense 24.67388899826682 0.4122521268485776 1 {I|L}M{I|L}AEV{M(Oxidation (M))|F} 7 5 77.912 0 0 7.3672 0 0 0 251.10186182193596 251.10186182193596 54.72434491421879 0 0 0 0 2.0114393726401687 1.6989700043360187 0.3252574989159953 0 {I|L}M{I|L}AEV{M(Oxidation (M))|F} 7.3672 - 608 + NaN NaN 153444.5 NaN 19669 4322 23989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23994 94.901 NaN 231100 35 0 31556 0.261 + 16231 LPWPRPSR 8 47 504.79084351525756 1007.5671340973151 2 504.791015625 MULTI HCD FTMS 0 0 0 23989 58726.65234375 0.34787534428823524 4 -0.0847930908203125 5 Unmodified _LPWPRPSR_ REV__ENST00000381582.3_1_4:47033695-47034813:+|nuORF 10.823927491677226 0.514154816617796 1 {I|L}PW 3 -1 30.445 0 0 3.0217 0 0 0 608.3375338190061 608.3375338190061 24.960762528683702 0 0 0 0 0.4247425010840047 0 0 0 {I|L}PW 3.0217 + + 9 + NaN NaN 133846.8 NaN 19670 4322 23989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23995 94.904 NaN 237440 35 0 35917 0.261 + 4888 FAFVEFEL 8 46 501.25264461626847 1000.490736299337 2 501.2526550292969 MULTI HCD FTMS 0 0 0 23989 133181.71875 0.48557587902505983 -4 0.121551513671875 6 Unmodified _FAFVEFEL_ ENSG00000084072|ENST00000324379|PPIE;ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE 50.855029805455786 0.12247309515496523 1 VE{M(Oxidation (M))|F}E{I|L} 5 3 54.949 0 0 5.4922 0 0 365.17332656074376 0 365.17332656074376 0 46.8765315847925 0 0 0 1.8494850021680094 0 0 0 + VE{M(Oxidation (M))|F}E{I|L} 5.4922 + + 93 NaN NaN 122591.8 NaN 19671 4322 23989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23997 94.909 NaN 711970 35 0 202780 0.327 + 10415 IPADIVFVL 9 52 493.79968230260863 985.5848116720173 2 493.7997741699219 MULTI HCD FTMS 0 0 0 23996 453160.125 0.42486242848947625 3 -0.0619659423828125 1 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 1 V{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.6861 0 0 509.28468297532544 0 509.28468297532544 0 31.92085350219358 0 0 0 1.4247425010840047 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.6861 + + 64 NaN NaN 195294.4 NaN 19672 4323 23996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23998 94.913 NaN 383730 35 0 58373 0.261 + 33800 YLGYPVLQI 9 52 554.3078377963003 1106.6011226594005 2 554.3081665039062 MULTI HCD FTMS 0 0 0 23996 434094.875 0.3826388464990578 8 -0.1761322021484375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YLGYPVLQI_ ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549 53.57557251787612 0.02656881086235134 1 V{I|L}Q{I|L} 4 5 50.433 0 0 4.5575 0 0 635.2954732373943 0 635.2954732373943 0 35.828956512079344 0 0 0 1.4247425010840047 0 0 0.4247425010840047 + V{I|L}Q{I|L} 4.5575 + + 77 NaN NaN 142049.2 NaN 19673 4323 23996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 23999 94.917 NaN 401350 35 0 120870 0.261 + 6289 FPFNPLDF 8 54 498.74486209914005 995.4751712650801 2 498.7450256347656 MULTI HCD FTMS 0 0 0 23996 269572.09375 0.37133386504590754 6 -0.12706756591796875 3 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 32.30548876998284 0.3297748069446609 1 NP{I|L}D{M(Oxidation (M))|F} 5 3 46.186 0 0 4.6396 0 0 391.18919570136876 0 391.18919570136876 0 22.028937514676485 0 0 0 1.4247425010840047 0 0 0 + NP{I|L}D{M(Oxidation (M))|F} 4.6396 + + 62 NaN NaN 143735.8 NaN 19674 4323 23996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24000 94.92 NaN 217920 35 0 22250 0.261 -1 0 57 622.8020327154419 1243.5895124976837 2 622.8033447265625 MULTI HCD FTMS 0 0 0 23996 96330.515625 0.0685407103260638 -25 0.611846923828125 4 NaN NaN 1 TP{M(Oxidation (M))|F}DPE 6 -1 55.737 0 0 4.4819 0 0 539.261522361525 0 539.261522361525 0 29.271081482726373 0 0 0 1.5114393726401687 0 0.4247425010840047 0 TP{M(Oxidation (M))|F}DPE 4.4819 - 276 NaN NaN 122991.5 NaN 19675 4323 23996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24001 94.923 NaN 135540 35 0 27221 0.263 + -1 YVALLLCL 8 28 482.77890983947213 963.5432667457443 2 483.2804870605469 MULTI HCD FTMS 0 0 0 23996 14828.8193359375 0.4837866114118847 1 -0.02286529541015625 5 Carbamidomethyl (C) _YVALLLC(Carbamidomethyl (C))L_ REV__ENSG00000118298|ENST00000369111|CA14 6.354104778181461 0.5325651638111438 1 A 1 -1 6.9897 0 0 0.72542 0 0 446.2532856801095 443.22990378087127 889.4831894609808 0 0 0 0 0 0 0 0 0 A 0.72542 + + 3 + NaN NaN 101924.6 NaN 19676 4323 23996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24002 94.927 NaN 77414 35 0 9297.5 0.261 -1 SEHSAQSLCQE 11 38 638.2666965736914 1274.5188402141828 2 639.2709350585938 MULTI HCD FTMS 0 0 0 23996 19954.35546875 0.2567673992664787 -22 0.54962158203125 6 Carbamidomethyl (C) _SEHSAQSLC(Carbamidomethyl (C))QE_ ENST00000394480.6_1_15:88690622-88799253:-|nuORF 4.5288652416199255 0.3990586020344083 1 M 1 -1 5.4846 0 0 0.43032 0 0 104.04084629561187 1036.4031250924183 1140.4439713880301 0 0 0 0 0 0 0 0 0 M 0.43032 - 1 + NaN NaN 89817.4 NaN 19677 4323 23996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24004 94.932 NaN 970370 35 0 262670 0.327 + 11279 IYLTFPVAMF 10 64 609.317515963484 1216.6204789937678 2 609.3177490234375 MULTI HCD FTMS 0 0 0 24003 408916.65625 0.2684410293660653 4 -0.08797454833984375 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 121.38 0 0 9.9768 9.9768 91.527 0 0 0 20.993624753846092 103.80964739886883 20.993624753846092 5.76606256887672 0 3.110924374808178 1.5228787452803376 1.9916440611282626 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9.9768;9.5029;8.4917;5.088;4.4365 +;-;-;-;- + 642 NaN NaN 222268.1 NaN 19678 4324 24003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24005 94.936 NaN 110870 35 0 11016 0.261 + 27908 TEFFFFLF 8 36 549.2704751560503 NaN 0 549.2860717773438 PEAK HCD FTMS 0 0 0 24003 6108.6337890625 0.3191610698703659 -2 0.04569244384765625 2 Unmodified _TEFFFFLF_ REV__AluJb_dup107864|chr17:42999154-42999315:-|5.467948494484028|0.0002278324850216|14.55|522.0|11|3|anti-sense 10.183394434864962 0.38822285293237185 1 {I|L} 1 -1 10.242 0 0 0.93407 0 0 818.3640571462819 162.05669580631096 980.4207529525928 0 0 0 0 0 0.3252574989159953 0 0 0 {I|L} 0.93407 + + 21 + NaN NaN 100583.7 NaN 19679 4324 24003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24006 94.94 NaN 126640 35 0 23094 0.261 + 32079 VYQVLIQFL 9 34 561.831421042616 1121.6482891520318 2 561.8314819335938 MULTI HCD FTMS 0 0 0 24003 29269.474609375 0.20805792146041227 -9 0.25792694091796875 3 Unmodified _VYQVLIQFL_ ENSG00000152104|ENST00000366956|PTPN14 30.636539890814138 0.10832830463492794 1 {I|L}{I|L}Q{I|L}{M(Oxidation (M))|F} 5 6 55.578 0 0 4.955 0 0 489.25755536472553 0 489.25755536472553 0 51.598630062565064 0 0 0 1.9247425010840047 0 0 0.28872548999643577 {I|L}{I|L}Q{I|L}{M(Oxidation (M))|F} 4.955 - 121 + NaN NaN 105112.5 NaN 19680 4324 24003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24007 94.943 NaN 39824 35 0 6522.5 0.261 -1 LPRQVFVKCH 10 29 642.3562044827047 1282.6978560322093 2 642.3555908203125 MULTI HCD FTMS 0 0 0 24003 42443.12109375 1 0 0 4 Carbamidomethyl (C) _LPRQVFVKC(Carbamidomethyl (C))H_ ENSG00000108852|ENST00000269095|MPP2;nc|ENSG00000108852|Q14168-2|MPP2;nc|ENSG00000108852|Q14168-3|MPP2;nc|ENSG00000108852|Q14168-4|MPP2;nc|ENSG00000108852|Q14168-5|MPP2;nc|ENSG00000108852|Q14168-6|MPP2;nc|ENSG00000108852|Q14168|MPP2 1.4819007175156935 0.4674597685733628 1 {I|L}P 2 -1 20.969 0 0 1.6348 0 0 0 1069.5300997369752 1069.5300997369752 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 1.6348 + + 1 + NaN NaN 100883.4 NaN 19681 4324 24003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24009 94.948 NaN 107010 35 0 5530.8 0.327 + 16050 LPSHRRRHRR 10 52 457.6082332782322 1369.8028704348967 3 457.6082763671875 MULTI HCD FTMS 0 0 0 24008 74689.9765625 0.2589468309859155 51 -1.0623397827148438 1 Unmodified _LPSHRRRHRR_ REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF 0.776531954647913 0.4711933975711956 1 P 1 -1 2.2185 0 0 0.16196 0 0 772.9517484639968 496.76780115299067 1269.7195496169875 0 0 0 0 0 0 0 0 0 P 0.16196 + + 6 + NaN NaN 96482.1 NaN 19682 4325 24008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24010 94.952 NaN 166620 35 0 44615 0.261 -1 0 48 548.345952256212 547.3386757896119 1 548.333984375 MULTI HCD FTMS 0 0 0 24008 61560.04296875 0.4930485822410328 -1 0.016265869140625 2 NaN NaN 1 E{I|L}{M(Oxidation (M))|F} 3 -1 16.031 0 0 2.9289 0 0 140.1322071390244 0 140.1322071390244 0 12.730012720637376 0 0 0 0 0 0 0 E{I|L}{M(Oxidation (M))|F} 2.9289 - 18 + NaN NaN 102365.9 NaN 19683 4325 24008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24011 94.956 NaN 199640 35 0 19363 0.261 + 33817 YLITDQAETVS 11 49 620.308397700201 1238.602242467202 2 620.3244018554688 MULTI HCD FTMS 0 0 0 24008 42454.9375 0.30088118878541764 7 -0.15985107421875 3 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 14.405379775768559 0.3315678654765638 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 47.549 0 0 3.839 0 0 0 598.2293795221311 598.2293795221311 40.55970632012567 0 0 0 0 1.586696871556164 1.6989700043360187 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 3.839 - 146 + NaN NaN 107353.7 NaN 19684 4325 24008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24012 94.959 NaN 220640 35 0 13380 0.261 -1 LYLEVFSML 9 61 565.79353719546 NaN 0 565.7924194335938 PEAK HCD FTMS 0 0 0 24008 49942.91015625 0.7779642969863659 1 -0.02283477783203125 4 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 18.1463463914782 0.1998403495282098 1 V{M(Oxidation (M))|F} 2 -1 21.836 0 0 1.9331 0 0 518.2766900750862 362.13813196353755 880.4148220386237 0 0 0 0 0 1.3252574989159953 0 0 0 V{M(Oxidation (M))|F} 1.9331 + + 86 + NaN NaN 117016.2 NaN 19685 4325 24008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24013 94.963 NaN 74883 35 0 10556 0.261 + 30002 VFMFPVGLYY 10 33 626.3098366626275 1250.605120392055 2 626.3096923828125 MULTI HCD FTMS 0 0 0 24008 32299.275390625 0.4903791010598115 -1 0.016265869140625 5 Oxidation (M) _VFM(Oxidation (M))FPVGLYY_ ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A 40.44857923139169 0.14151405174515247 1 {M(Oxidation (M))|F}[VP]{[VA]|[{I|L}G]}YY 7 3 34.793 0 0 2.7821 0 0 393.17317397285314 0 393.17317397285314 0 27.80349141202521 0 0 0 1.7302046884880937 0 0 0 + {M(Oxidation (M))|F}[VP]{[VA]|[{I|L}G]}YY 2.7821 + + 19 NaN NaN 90176.5 NaN 19686 4325 24008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24014 94.966 NaN 116740 35 0 18618 0.261 -1 0 30 638.2666965736914 1274.5188402141828 2 638.26708984375 MULTI HCD FTMS 0 0 0 24008 37817.30859375 0.15056140755771927 -23 0.5626220703125 6 NaN NaN 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3573518207984 0 939.3573518207984 0 23.187587626244124 0 0 0 0 0 0 0 VMS 1.8193 - 8 NaN NaN 104956.2 NaN 19687 4325 24008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24016 94.971 NaN 404390 35 0 43379 0.327 + 33833 YLKDFNYIL 9 63 594.8187217079366 1187.622890482673 2 594.8184204101562 MULTI HCD FTMS 0 0 0 24015 124046.21875 0.6242191715162702 6 -0.13701629638671875 1 Unmodified _YLKDFNYIL_ tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1 25.399314129420986 0.14091189997036632 1 {M(Oxidation (M))|F}Y{I|L}{I|L} 4 5 38.716 0 0 3.26 0 0 633.311327049025 0 633.311327049025 0 31.726759565325295 0 0 0 1.1549471895720984 0 0 0 {M(Oxidation (M))|F}Y{I|L}{I|L} 3.26 - 28 NaN NaN 152055 NaN 19688 4326 24015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24017 94.975 NaN 51887 35 0 4732.3 0.261 + 35610 YYIFIPSKF 9 42 589.3193626518395 NaN 0 589.3179321289062 PEAK HCD FTMS 0 0 0 24015 19160.8359375 0.8531425840276502 1 -0.00963592529296875 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.22786006501039813 1 E 1 9 10.485 0 0 0.89107 0 0 477.2594395597351 567.2944429986936 1044.5538825584288 0 0 0 0 0 0.5 0 0 0 E 0.89107 - 3 + NaN NaN 95913.9 NaN 19689 4326 24015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24019 94.98 NaN 1816900 35 0 192350 0.327 + 6425 FPIAEVFTL 9 95 518.78937621757 1035.5641995019398 2 518.7896118164062 MULTI HCD FTMS 0 0 0 24018 1154599 0.660011950079479 1 -0.03923797607421875 1 Unmodified _FPIAEVFTL_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 154.46347324262513 4.107785341423729E-06 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L} 9 0 + 87.942 0 0 8.4922 8.4922 95.749 0 0 0 20.87128018967597 24.20818753952375 20.87128018967597 24.503187623076954 0 2.2059771852360797 1.5228787452803376 0.9049471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV[{I|L}T]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PA]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEVV[YV];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[R{M(Oxidation (M))|F}]{I|L}M{I|L};[{I|L}T]{M(Oxidation (M))|F}VEA{I|L}P{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}A[EP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AT{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ATV[{M(Oxidation (M))|F}E]{I|L} 8.4922;6.126;6.0065;5.3057;5.3044;4.3567;4.3338;4.1066;3.8818;3.7611 +;-;-;-;-;-;-;-;-;- + 1612 NaN NaN 366078.2 NaN 19690 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24020 94.985 NaN 1246200 35 0 237830 0.261 + 29495 TYVPWPLML 9 73 568.2963716718683 1134.5781904105365 2 568.2967529296875 MULTI HCD FTMS 0 0 0 24018 517661.125 0.6770867420674915 1 -0.03923797607421875 2 Oxidation (M) _TYVPWPLM(Oxidation (M))L_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 97.07464715276575 0.004340583992084827 1 [YT]VPWP{I|L}{M(Oxidation (M))|F}{I|L} 9 0 + 94.79 0 0 8.3547 8.3547 90.237 0 0 0 15.568109453757657 16.478174818886373 15.568109453757657 6.817496819840656 0 2.5114393726401687 1.6989700043360187 0.7614393726401688 0 + + [YT]VPWP{I|L}{M(Oxidation (M))|F}{I|L};[YT]VPWP{M(Oxidation (M))|F}{I|L}{I|L};[YV]TPWP{I|L}{M(Oxidation (M))|F}{I|L};[YV]TPWP{M(Oxidation (M))|F}{I|L}{I|L};[YT][WP]VP{I|L}{M(Oxidation (M))|F}{I|L};[YT][WP]VP{M(Oxidation (M))|F}{I|L}{I|L};[YT]VP{[DA]|[EG]}{[QV]|[N{I|L}]|[RA]|[KV]}{[QD]|[EN]|[WG]|[KD]|[RS]};[WP][YT]VP{I|L}{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}P{[DA]|[EG]}PV{M(Oxidation (M))|F}V;[YT][WP]PV{I|L}{M(Oxidation (M))|F}{I|L} 8.3547;7.7538;6.9825;6.3816;5.9568;5.3559;5.1575;4.611;4.5109;4.3395 +;-;-;-;-;-;-;-;-;- + 2021 NaN NaN 277999.4 NaN 19691 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24021 94.988 NaN 365740 35 0 40772 0.261 + 5795 FPATVLWEL 9 56 538.2945059117986 1074.5744588903972 2 538.2951049804688 MULTI HCD FTMS 0 0 0 24018 153921.625 0.3437497600971029 7 -0.16649627685546875 3 Unmodified _FPATVLWEL_ ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;nc|ENSG00000155363|Q9HCE1-2|MOV10 29.081581746732265 0.1154664336125038 1 V{I|L}WE{I|L} 5 4 44.737 0 0 4.1632 0 0 416.20591933418126 0 416.20591933418126 0 33.499934467764874 0 0 0 1.305462187404089 0 0 0 + V{I|L}WE{I|L} 4.1632 + + 89 NaN NaN 133183.9 NaN 19692 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24022 94.992 NaN 395230 35 0 42367 0.261 -1 0 66 622.8020327154419 1243.5895124976837 2 622.8017578125 MULTI HCD FTMS 0 0 0 24018 167523.8125 0.11919588544484475 -21 0.5089569091796875 4 NaN NaN 1 TP{M(Oxidation (M))|F}DPE 6 -1 61.815 0 0 4.9707 0 0 539.2643092351244 0 539.2643092351244 0 36.37009080640347 0 0 0 1.6861818737241734 0 0.3807196863200844 0 TP{M(Oxidation (M))|F}DPE 4.9707 - 293 NaN NaN 139818.6 NaN 19693 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24023 94.995 NaN 511490 35 0 69458 0.261 + 6092 FPEEVIATIF 10 61 583.3103729426534 1164.6061929521068 2 583.3106689453125 MULTI HCD FTMS 0 0 0 24018 122893.9609375 0.26897861963577485 7 -0.16649627685546875 5 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 47.748688679222035 0.08597705450879027 1 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 57.722 0 0 4.9563 0 0 601.274576945888 0 601.274576945888 0 13.131871548839484 0 0 0 1.9489700043360187 0 0.805462187404089 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 4.9563 + + 180 NaN NaN 156131.7 NaN 19694 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24024 94.998 NaN 261830 35 0 14682 0.263 + 7075 FQVKLLYRMR 10 71 451.93248683120106 1352.7756310938032 3 451.9326171875 MULTI HCD FTMS 0 0 0 24018 183816.71875 0.25599266734059406 38 -0.8650588989257812 6 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 1.7422754331352037 0.46608156381052757 1 Q 1 -1 8.2268 0 0 0.60814 0 0 678.403940275247 543.3037813775999 1221.7077216528469 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.60814 + + 30 + NaN NaN 117097.9 NaN 19695 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24025 95.001 NaN 170500 35 0 21832 0.261 -1 0 41 577.9595008638288 3461.7133463833725 6 578.29443359375 MULTI HCD FTMS 0 0 0 24018 45916.2421875 0.46701661982154247 1 -0.03923797607421875 7 NaN NaN 1 {I|L}W 2 -1 8.5835 0 0 0.24796 0 0 2438.233900319279 721.2973116510374 3159.5312119703167 0 0 0 0 0 0 0 0 0 {I|L}W 0.24796 - 9 + NaN NaN 100357.1 NaN 19696 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24026 95.005 NaN 121540 35 0 12540 0.261 + 13479 KYPENFFLL 9 40 585.8133937022669 1169.6122344713337 2 585.8135986328125 MULTI HCD FTMS 0 0 0 24018 52792.90234375 0.5298453665033024 15 -0.33921051025390625 8 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3628407209 0 778.3628407209 0 31.197887582883936 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 11 NaN NaN 99613.6 NaN 19697 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24027 95.008 NaN 119900 35 0 12640 0.262 + 18494 MRKGIRWLIEL 11 50 472.2838411813653 1413.829694144296 3 472.2835693359375 MULTI HCD FTMS 0 0 0 24018 44221.28125 0.09061999097053898 -27 0.6507339477539062 9 Unmodified _MRKGIRWLIEL_ ENSG00000183735|ENST00000331710|TBK1 0.5059551277355931 0.4167017191902429 1 R 1 10 3.4949 0 0 0.24719 0 0 959.5521195366772 295.14423547916255 1254.6963550158398 0 0 0 0 0 0 0 0 0 + R 0.24719 + + 1 + NaN NaN 95714.4 NaN 19698 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24028 95.011 NaN 88232 35 0 10365 0.261 + 16547 LTSLPVVLL 9 32 477.8154350754765 953.616317217753 2 477.8150634765625 MULTI HCD FTMS 0 0 0 24018 12011.48828125 0.25967149194817146 1 -0.03923797607421875 10 Unmodified _LTSLPVVLL_ REV__ENSG00000153922|ENST00000614616|CHD1;REV__nc|ENSG00000153922|O14646-2|CHD1 21.74664581756881 0.17247014374749275 1 V{I|L}{I|L} 3 -1 36.198 0 0 3.7959 0 0 610.3696039384957 0 610.3696039384957 0 35.81928401319335 0 0 0 1 0 0 0 V{I|L}{I|L} 3.7959 + + 10 NaN NaN 97148.7 NaN 19699 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24029 95.015 NaN 86574 35 0 5766.3 0.261 + 23266 RGRVYRRRSRP 11 52 486.9590036169928 1457.8551814511784 3 486.9587707519531 MULTI HCD FTMS 0 0 0 24018 42867.3359375 0.5004129053369257 -10 0.24742889404296875 11 Unmodified _RGRVYRRRSRP_ REV__ENSG00000166851|ENST00000300093|PLK1 0.09484139111097674 0.41850472438158626 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99443.3 NaN 19700 4327 24018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24031 95.02 NaN 268610 35 0 45551 0.327 + 1298 AYNDNWFITF 10 44 645.7924385314823 1289.5703241297645 2 645.7933349609375 MULTI HCD FTMS 0 0 0 24030 86410.84375 0.008345037493874797 28 -0.591552734375 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 51.41523569358685 0.07264263333115425 1 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 54.38 0 0 4.2169 0 0 577.2128682928172 0 577.2128682928172 0 38.182503180159344 0 0 0 1.8807196863200843 0 0 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4.2169 + + 40 NaN NaN 122356.3 NaN 19701 4328 24030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24032 95.024 NaN 691220 35 0 65394 0.262 + 15112 LMIYRFCL 8 76 529.7804415377702 1057.5463301423404 2 529.7808227539062 MULTI HCD FTMS 0 0 0 24030 89854.0390625 0.25499708228057466 2 -0.04573822021484375 2 Unmodified _LMIYRFCL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense 19.438996006549623 0.45076845602799126 1 {M(Oxidation (M))|F}VEA{I|L}PE 7 7 55.047 0 0 5.2051 0 0 254.12437636543126 0 254.12437636543126 0 34.19259082471888 0 0 0 1.5189301784845295 0 0.3807196863200844 0 {M(Oxidation (M))|F}VEA{I|L}PE 5.2051 - 1508 NaN NaN 196859.3 NaN 19702 4328 24030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24033 95.028 NaN 129230 35 0 15032 0.261 + 5918 FPDLPFTDEL 10 42 597.2900352759292 NaN 0 597.2900390625 PEAK HCD FTMS 0 0 0 24030 26094.091796875 0.12372721004278386 22 -0.5007781982421875 3 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 27.628801355627647 0.21883835723996892 1 EDP 3 8 25.445 0 0 2.1337 0 0 131.0956112326724 717.308921829371 848.4045330620434 0 0 0 0 0 0.5 0 0.4247425010840047 0 EDP 2.1337 - 10 + NaN NaN 109732.8 NaN 19703 4328 24030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24034 95.031 NaN 136850 35 0 14342 0.262 + 31963 VYPGLAVFF 9 43 506.77887089011085 1011.5431888470217 2 506.779541015625 MULTI HCD FTMS 0 0 0 24030 19189.74609375 0.012061601781011148 28 -0.591552734375 4 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 28.173230860318316 0.11963627304438548 1 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 44.68 0 0 4.4171 0 0 529.2893921099936 0 529.2893921099936 0 41.5815315012393 0 0 0 1.4247425010840047 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4171 + + 18 NaN NaN 106831.2 NaN 19704 4328 24030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24036 95.036 NaN 1514000 35 0 175890 0.327 + 32028 VYPLYTIVF 9 73 557.8127021642706 1113.6108513953411 2 557.81298828125 MULTI HCD FTMS 0 0 0 24035 650168.875 0.7691791588844475 3 -0.0719146728515625 1 Unmodified _VYPLYTIVF_ ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP 129.2004930540761 0.0006534604433583781 1 [YV]P{I|L}YT{I|L}V{M(Oxidation (M))|F} 9 0 + 92.362 0 0 8.2939 8.2939 96.106 0 0 0 13.51342204748164 13.51342204748164 13.51342204748164 34.00637524615391 0 2.774227503252014 1.3010299956639813 1.079689690656103 0 + + [YV]P{I|L}YT{I|L}V{M(Oxidation (M))|F};[YV]P{I|L}[{I|L}T]YV{M(Oxidation (M))|F};[YV]P{I|L}YT{M(Oxidation (M))|F}[{I|L}V];[YV]P{I|L}Y{M(Oxidation (M))|F}T[{I|L}V];[YV]P{I|L}YVV[YV];[YV]P{I|L}[{I|L}T]{M(Oxidation (M))|F}[YV] 8.2939;5.2402;4.3405;3.9631;2.5904;1.713 +;-;-;-;-;- + 793 NaN NaN 311704.8 NaN 19705 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24037 95.04 NaN 315380 35 0 55515 0.261 + 10094 IFGVIIDTF 9 58 512.7892801653281 1023.5640073974563 2 512.789306640625 MULTI HCD FTMS 0 0 0 24035 129454.2265625 0.14969168112318865 9 -0.18245697021484375 2 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 70.71552829651908 0.008856681705782516 1 {I|L}{I|L}DT{M(Oxidation (M))|F} 5 4 46.855 0 0 4.5776 0 0 416.24191743965133 0 416.24191743965133 0 33.667053245199625 0 0 0 1.7302046884880937 0 0 0 + {I|L}{I|L}DT{M(Oxidation (M))|F} 4.5776 + + 95 NaN NaN 134328.8 NaN 19706 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24038 95.044 NaN 179610 35 0 31792 0.261 + 8856 HLTLEFLE 8 41 501.2685887194705 NaN 0 501.25274658203125 PEAK HCD FTMS 0 0 0 24035 12026.4326171875 0.8667475908207882 -1 0.01622772216796875 3 Unmodified _HLTLEFLE_ ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 8.593279151180031 0.38822285293237185 1 E{M(Oxidation (M))|F}W{M(Oxidation (M))|F} 4 6 24.24 0 0 2.4228 0 0 131.12722385557953 257.11408411197505 388.2413079675546 0 0 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F}W{M(Oxidation (M))|F} 2.4228 - 74 + NaN NaN 127106.9 NaN 19707 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24039 95.047 NaN 215870 35 0 44779 0.261 + 10416 IPADIVFVL 9 36 493.79968230260863 985.5848116720173 2 493.7998046875 MULTI HCD FTMS 0 0 0 24035 75723.46875 0.07099489794423541 9 -0.18245697021484375 4 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 1 V{M(Oxidation (M))|F}V{I|L} 4 5 41.67 0 0 4.228 0 0 509.28584487129064 0 509.28584487129064 0 34.680475292681265 0 0 0 1.274227503252014 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.228 + + 28 NaN NaN 120611.8 NaN 19708 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24040 95.051 NaN 232450 35 0 34123 0.261 + 11177 IYIWDLNNF 9 64 599.3004589776755 1196.5863650221509 2 599.3004150390625 MULTI HCD FTMS 0 0 0 24035 71728.03125 0.009046843674183859 59 -1.235382080078125 5 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 72.96794272382148 0.008127836904478181 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 88.638 0 0 7.4076 7.4076 90.525 0 0 0 24.13734275855269 83.1534346010126 24.13734275855269 9.208187539523749 0 2.305462187404089 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E[QT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.4076;6.638;6.638;5.8721;5.4237;4.6542;4.6542;2.375 +;-;-;-;-;-;-;- + 273 NaN NaN 136685.2 NaN 19709 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24041 95.054 NaN 117930 35 0 23016 0.261 + 6114 FPEGLFYEF 9 44 574.7687124378033 NaN 0 574.7682495117188 PEAK HCD FTMS 0 0 0 24035 48591.3203125 0.030881466872717585 50 -1.0264205932617188 6 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 30.636539890814138 0.11600348607007434 1 EY{M(Oxidation (M))|F} 3 6 32.664 0 0 2.8465 0 0 165.07869155097814 540.246601761019 705.325293311997 0 0 0 0 0 1.9247425010840047 0 0.5 0 EY{M(Oxidation (M))|F} 2.8465 - 15 NaN NaN 107850.1 NaN 19710 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24042 95.057 NaN 90388 35 0 7928.6 0.261 -1 MFPHSWTAP 9 38 545.2452591948072 1088.4759654564143 2 545.2451171875 MULTI HCD FTMS 0 0 0 24035 28591 0.27043325283352265 7 -0.14682769775390625 7 Oxidation (M) _M(Oxidation (M))FPHSWTAP_ ENST00000582659.5_1_17:19140722-19177409:+|nuORF 2.0597508629832335 0.3354026079994024 1 SQ 2 -1 19.464 0 0 1.7882 0 0 0 870.3367564025833 870.3367564025833 19.463950151760656 0 0 0 0 0 0 0 0 SQ 1.7882 - 4 + NaN NaN 106768.1 NaN 19711 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24043 95.061 NaN 125260 35 0 42225 0.261 + -1 VKCRGLHF 8 37 508.7771601955521 NaN 0 508.77728271484375 PEAK HCD FTMS 0 0 0 24035 24744.7890625 0.40098390877821893 6 -0.13393402099609375 8 Carbamidomethyl (C) _VKC(Carbamidomethyl (C))RGLHF_ REV__ENST00000169298.7_1_3:186793708-186793933:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98443.3 NaN 19712 4329 24035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24045 95.065 NaN 286270 35 0 43516 0.327 + -1 PVYEMVLQL 9 60 554.2897605326266 NaN 0 554.3084106445312 PEAK HCD FTMS 0 0 0 24044 6414.06103515625 0.4067001575158491 2 -0.0424041748046875 1 Oxidation (M) _PVYEM(Oxidation (M))VLQL_ REV__ENSG00000105397|ENST00000525621|TYK2 16.942295170755138 0.2079222001251384 1 Q{I|L}V{I|L} 4 -1 17.423 0 0 1.5745 0 0 131.05655011442758 519.1900728815061 650.2466229959336 0 0 0 0 0 0 0 0 0 Q{I|L}V{I|L} 1.5745 - 60 + NaN NaN 125119.5 NaN 19713 4330 24044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24046 95.07 NaN 626330 35 0 74555 0.261 + 15113 LMIYRFCL 8 68 529.7804415377702 1057.5463301423404 2 529.7808837890625 MULTI HCD FTMS 0 0 0 24044 67868.2734375 0.19260360342783256 4 -0.08152008056640625 2 Unmodified _LMIYRFCL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense 19.438996006549623 0.45076845602799126 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PP{I|L}P 8 6 46.965 0 0 4.441 0 0 0 144.04708752179684 144.04708752179684 20.545970543767126 0 0 0 0 0.28872548999643577 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PP{I|L}P 4.441 - 859 NaN NaN 193459.7 NaN 19714 4330 24044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24047 95.073 NaN 316850 35 0 41155 0.261 + 3513 EICEFTIEF 9 56 565.7573805793397 1129.5002082254794 2 565.7571411132812 MULTI HCD FTMS 0 0 0 24044 52224.07421875 0.5728126725053784 -3 0.0849761962890625 3 Unmodified _EICEFTIEF_ REV__ENSG00000111875|ENST00000229595|ASF1A;REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF 30.224811164608877 0.11021837014094292 1 M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}P{I|L}E{I|L}{M(Oxidation (M))|F} 9 -1 + 60.94 0 0 5.3953 5.3953 92.063 0 0 0 40.26084705832169 16.395636598781223 16.395636598781223 60.93957925507027 0 1.7302046884880937 0 0.3494850021680094 0 M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}P{I|L}E{I|L}{M(Oxidation (M))|F} 5.3953 - 582 + NaN NaN 130441.5 NaN 19715 4330 24044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24048 95.077 NaN 87826 35 0 18242 0.261 + 6290 FPFNPLDF 8 32 498.74486209914005 995.4751712650801 2 498.7449645996094 MULTI HCD FTMS 0 0 0 24044 38197.7578125 0.05261717133731739 13 -0.27375030517578125 4 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 16.942295170755138 0.46913822049235215 1 D{M(Oxidation (M))|F} 2 6 34.776 0 0 3.4934 0 0 715.3697463156645 0 715.3697463156645 0 34.776296993281406 0 0 0 1 0 0.3807196863200844 0 + D{M(Oxidation (M))|F} 3.4934 + + 10 + NaN NaN 97287.5 NaN 19716 4330 24044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24049 95.08 NaN 183330 35 0 26979 0.261 -1 MAKQFSWWF 9 57 416.19543432210924 1245.5644735665278 3 416.1958312988281 MULTI HCD FTMS 0 0 0 24044 5473.32470703125 0.03498868774834315 -16 0.424468994140625 5 Oxidation (M) _M(Oxidation (M))AKQFSWWF_ ENST00000357103.4_1_12:1895563-1895707:+|nuORF 2.498486711656943 0.33207666356665205 1 V{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9641 0 0 981.4176667811747 0 981.4176667811747 0 18.979400086720375 0 0 0 0.3494850021680094 0 0 0 V{M(Oxidation (M))|F} 1.9641 - 6 + NaN NaN 116648.6 NaN 19717 4330 24044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24051 95.085 NaN 216590 35 0 25849 0.327 + 17393 LYQKEMWIE 9 38 620.308397700201 1238.602242467202 2 620.323486328125 MULTI HCD FTMS 0 0 0 24050 8650.322265625 0.06130545467551842 12 -0.2541961669921875 1 Unmodified _LYQKEMWIE_ REV__ENSG00000137251|ENST00000259782|TINAG;REV__nc|ENSG00000137251|Q9UJW2-2|TINAG 3.5964929083625545 0.32375295897743744 1 [Y{I|L}]{I|L} 3 -1 22.676 0 0 1.8308 0 0 0 846.3488863580686 846.3488863580686 15.686362358410122 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L} 1.8308 - 3 + NaN NaN 116738.5 NaN 19718 4331 24050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24052 95.089 NaN 262390 35 0 68638 0.261 + 11280 IYLTFPVAMF 10 40 609.317515963484 1216.6204789937678 2 609.3178100585938 MULTI HCD FTMS 0 0 0 24050 94530.46875 0.0620563040166126 11 -0.23468017578125 2 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 92.8221339359638 0.000785806387253049 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 94.742 0 0 7.7873 7.7873 95.723 0 0 0 22.754537344402905 90.13805019828801 22.754537344402905 45.07129707683461 0 2.4247425010840047 1.6989700043360187 1.110924374808178 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.7873;4.0827 +;- + 74 NaN NaN 120482.2 NaN 19719 4331 24050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24053 95.093 NaN 232310 35 0 49998 0.261 + 11137 IYIPSYFDF 9 50 582.7843070882576 1163.5540612433151 2 582.7843627929688 MULTI HCD FTMS 0 0 0 24050 74875.6015625 0.040448165619524516 19 -0.43548583984375 3 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 81.61307344734483 0.005330412723537057 1 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}]{I|L} + + 57.573 27.447 7.0517 4.948 4.948 61.511 0 0 0 0 15.133418048066787 0 0 0 2.1989700043360187 0 0.6989700043360187 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.948 + + 125 + NaN NaN 122949.3 NaN 19720 4331 24050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24054 95.096 NaN 206430 35 0 44073 0.264 + 5911 FPDLFVADFCS 11 42 420.8583664775622 1259.5532700328865 3 421.1928405761719 MULTI HCD FTMS 0 0 0 24050 18292.6875 0.11399281768482991 -24 0.5809097290039062 4 Unmodified _FPDLFVADFCS_ REV__ENSG00000244122|ENST00000373426|UGT1A7;REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 6.623454094837244 0.3898724468670146 1 DPE 3 -1 32.892 0 0 2.6114 0 0 900.4050678812756 0 900.4050678812756 0 15.545970543767126 0 0 0 0.28872548999643577 0 0.3807196863200844 0 DPE 2.6114 - 10 NaN NaN 124760.9 NaN 19721 4331 24050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24055 95.1 NaN 98744 35 0 12604 0.261 + 16051 LPSHRRRHRR 10 47 457.6082332782322 1369.8028704348967 3 457.60791015625 MULTI HCD FTMS 0 0 0 24050 40840.890625 0.14159355362946913 57 -1.1863174438476562 5 Unmodified _LPSHRRRHRR_ REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF 0.776531954647913 0.4711933975711956 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 102379.7 NaN 19722 4331 24050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24056 95.103 NaN 78337 35 0 5469.9 0.261 + 24227 RYFLPPYTF 9 44 602.3136763354968 1202.6127997377935 2 602.3132934570312 MULTI HCD FTMS 0 0 0 24050 17457.826171875 0.606466862417132 -4 0.10453033447265625 6 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.27331982688540024 1 V{M(Oxidation (M))|F} 2 8 23.583 0 0 1.961 0 0 938.466600486525 0 938.466600486525 0 16.593793813122062 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.961 - 13 NaN NaN 93537.5 NaN 19723 4331 24050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24058 95.108 NaN 834340 35 0 150220 0.327 + 7617 FYIESISFL 9 77 559.7919288549228 1117.5693047766456 2 559.7919311523438 MULTI HCD FTMS 0 0 0 24057 264882.78125 0.41643468490488267 -2 0.0424041748046875 1 Unmodified _FYIESISFL_ ENSG00000114541|ENST00000398540|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 92.8221339359638 0.0044520161739443126 1 [Y{I|L}]{M(Oxidation (M))|F}TD{I|L}S{M(Oxidation (M))|F}{I|L} 9 4 + 78.923 0 0 7.062 7.062 84.996 0 0 0 0.04873250010928132 16.47817481888638 0.04873250010928132 0.04873250010928132 0 1.805462187404089 1.0457574905606752 1.274227503252014 0 [Y{I|L}]{M(Oxidation (M))|F}TD{I|L}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}TD{I|L}S{M(Oxidation (M))|F}{I|L};[Y{I|L}]{M(Oxidation (M))|F}T{I|L}DS{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}T{I|L}DS{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]E{I|L}S{I|L}S{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{M(Oxidation (M))|F}S{I|L}S{M(Oxidation (M))|F}{I|L};[Y{I|L}]A[YE]{I|L}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR][KA]S{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}S{M(Oxidation (M))|F}{I|L} 7.062;7.0576;6.7887;6.3452;6.072;5.7038;5.6241;5.5413;4.8954;4.7663 -;-;-;-;-;-;-;-;-;- 1084 NaN NaN 205797.6 NaN 19724 4332 24057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24059 95.112 NaN 430340 35 0 79743 0.261 + 28265 TLMEEVLLL 9 56 530.8015125861392 1059.5884722390783 2 530.8016357421875 MULTI HCD FTMS 0 0 0 24057 139378.03125 0.3624854714350187 -2 0.0424041748046875 2 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 21.74664581756881 0.17247014374749275 1 PV{I|L}{I|L}{I|L} 5 5 46.682 0 0 4.4057 0 0 506.2155934064469 0 506.2155934064469 0 27.105319037595876 0 0 0 1.3494850021680094 0 0 0 PV{I|L}{I|L}{I|L} 4.4057 - 124 NaN NaN 147675.5 NaN 19725 4332 24057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24060 95.116 NaN 429550 35 0 29052 0.261 -1 0 82 538.327211786718 1074.6398706402358 2 538.3272094726562 MULTI HCD FTMS 0 0 0 24057 175571.25 0.21590666287497406 -7 0.15985107421875 3 NaN NaN 1 EW{I|L}Y 4 -1 15.191 0 0 1.4136 0 0 131.15962807459078 349.1875094049438 480.3471374795346 0 0 0 0 0 0.3252574989159953 0 0 0 EW{I|L}Y 1.4136 - 86 + NaN NaN 152196.5 NaN 19726 4332 24057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24061 95.119 NaN 182470 35 0 38030 0.261 + 32080 VYQVLIQFL 9 45 561.831421042616 1121.6482891520318 2 561.8316040039062 MULTI HCD FTMS 0 0 0 24057 86029.7265625 0.6115301463822065 -1 0.02285003662109375 4 Unmodified _VYQVLIQFL_ ENSG00000152104|ENST00000366956|PTPN14 30.636539890814138 0.10832830463492794 1 {I|L}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5 4 50.15 0 0 4.4711 0 0 489.25816571628803 0 489.25816571628803 0 45.545970543767126 0 0 0 1.9247425010840047 0 0.7302046884880937 0.28872548999643577 + {I|L}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4.4711 + + 101 + NaN NaN 118536.2 NaN 19727 4332 24057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24062 95.122 NaN 556330 35 0 135220 0.261 + 1094 AYILDTLVF 9 66 527.7947089199433 1053.5748649066866 2 527.7943725585938 MULTI HCD FTMS 0 0 0 24057 213948 0.14470450617223413 -6 0.13701629638671875 5 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 131.29775728308752 0.0005262696486345744 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F} 9 0 + 101.4 0 0 9.6241 9.6241 94.797 0 0 0 14.907264505680189 74.85531242661757 14.907264505680189 11.020599913279625 0 3.1989700043360187 1.2218487496163564 1.0356668758921828 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}D{I|L}TV{M(Oxidation (M))|F};[{I|L}V]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};[YV]VVDT{I|L}V{M(Oxidation (M))|F};[{I|L}V]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}TV{M(Oxidation (M))|F};[YV]VVD{I|L}TV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{M(Oxidation (M))|F}V]{I|L}{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[{M(Oxidation (M))|F}V]{I|L}{[ES]|[DT]|[{I|L}C]};[YV]VV[{M(Oxidation (M))|F}V]{I|L}{[ES]|[DT]|[{I|L}C]} 9.6241;8.5781;7.2779;7.1581;6.2319;6.1121;2.9691;2.4946;1.1962 +;-;-;-;-;-;-;-;- + 915 NaN NaN 158501 NaN 19728 4332 24057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24063 95.126 NaN 361920 35 0 52375 0.261 -1 SRCYSSNEVSS 11 47 638.2666965736914 1274.5188402141828 2 638.767578125 MULTI HCD FTMS 0 0 0 24057 57145.00390625 0.19063806105559208 -16 0.40777587890625 6 Carbamidomethyl (C) _SRC(Carbamidomethyl (C))YSSNEVSS_ sp|P0DKA0|VE8E2_HPV16ProteinE8^E2COS=Humanpapillomavirustype16OX=333760PE=1SV=1 4.189502756095605 0.4005469306127019 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3566868730937 0 939.3566868730937 0 18.58349385648225 0 0 0 0 0 0 0 VMS 1.8193 - 30 NaN NaN 136395.8 NaN 19729 4332 24057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24065 95.131 NaN 760080 35 0 76919 0.327 -1 0 81 622.8020327154419 1243.5895124976837 2 622.8016357421875 MULTI HCD FTMS 0 0 0 24064 403909.15625 0.28738785728446153 -15 0.36618804931640625 1 NaN NaN 1 TP{M(Oxidation (M))|F}DPE 6 -1 67.128 0 0 5.3979 0 0 539.2650915779464 0 539.2650915779464 0 29.982901438674233 0 0 0 1.610924374808178 0 0.6861818737241735 0 TP{M(Oxidation (M))|F}DPE 5.3979 - 1229 NaN NaN 200180.1 NaN 19730 4333 24064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24066 95.135 NaN 156130 35 0 10286 0.264 -1 0 63 451.93248683120106 1352.7756310938032 3 451.93267822265625 MULTI HCD FTMS 0 0 0 24064 104852.3203125 0.14602276297920927 44 -0.8925704956054688 2 NaN NaN 1 Q 1 -1 5.4846 0 0 0.40543 0 0 722.432504728372 499.27643762760005 1221.708942355972 0 0 0 0 0 0 0 0 0 Q 0.40543 - 11 + NaN NaN 113758.3 NaN 19731 4333 24064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24067 95.139 NaN 202840 35 0 10063 0.261 + 22509 QRRVRPALP 9 68 546.8406375779383 1091.6667222226765 2 546.84033203125 MULTI HCD FTMS 0 0 0 24064 149410.859375 0.3025269171680153 -5 0.11096954345703125 3 Unmodified _QRRVRPALP_ ENST00000546828.6_1_12:98909466-98909845:+|nuORF 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F} 1 9 13.099 0 0 1.1999 0 0 926.5877254959172 0 926.5877254959172 0 -1.2149861442097016 -1.2149861442097016 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1999 - 38 + NaN NaN 110232.6 NaN 19732 4333 24064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24068 95.142 NaN 173630 35 0 32312 0.261 -1 YLLFTYNCC 9 49 598.7596819144552 1195.5048108957103 2 598.7589111328125 MULTI HCD FTMS 0 0 0 24064 74532.6171875 1 0 0 4 Carbamidomethyl (C) _YLLFTYNC(Carbamidomethyl (C))C_ ENSG00000177697|ENST00000397420|CD151;ENST00000530155.5_1_11:832961-836303:+|nuORF;ENST00000531999.5_1_11:834538-836303:+|nuORF;ENST00000532045.5_1_11:834538-836571:+|nuORF 5.230669730166228 0.3113646817964458 1 [Y{I|L}]{I|L}WD{I|L}NN 8 -1 45.839 0 0 3.8343 0 0 0 160.9861166598047 160.9861166598047 17.64645333192 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L}WD{I|L}NN 3.8343 - 186 NaN NaN 104437.4 NaN 19733 4333 24064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24070 95.147 NaN 807560 35 0 150410 0.327 + 30551 VNFEFPEFQL 10 75 635.311197668403 1268.607842403606 2 635.3110961914062 MULTI HCD FTMS 0 0 0 24069 421738.4375 0.483837359936609 -4 0.08152008056640625 1 Unmodified _VNFEFPEFQL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000484240.1_1_17:44798950-44799232:-|nuORF 70.49555756994154 0.016998145436175466 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 10 4 + 68.241 0 0 5.3792 5.3792 82.536 0 0 0 1.1959008170880168 13.72287597652155 1.1959008170880168 1.1959008170880168 0 1.6549471895720984 0 0.805462187404089 0.9436726795685342 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]NV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VPE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VEE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Q{I|L} 5.3792;5.2849;5.2092;4.8282;4.7753;4.686;4.6568;4.6526;4.5625;4.5584 -;-;+;-;-;-;-;-;-;- + 2346 NaN NaN 212033.5 NaN 19734 4334 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24071 95.151 NaN 254780 35 0 36556 0.261 + 22929 QYSSFFLYL 9 56 584.2898495492815 1166.5651461653629 2 584.2900390625 MULTI HCD FTMS 0 0 0 24069 199448.515625 0.5877537287654382 -4 0.08152008056640625 2 Unmodified _QYSSFFLYL_ ENSG00000148110|ENST00000375344|MFSD14B;ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}{I|L}Y{I|L} 4 5 40.349 0 0 3.4588 0 0 612.2512074201187 0 612.2512074201187 0 29.35856673603103 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}{I|L}Y{I|L} 3.4588 + + 101 NaN NaN 134660 NaN 19735 4334 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24072 95.155 NaN 274300 35 0 40492 0.261 + 1299 AYNDNWFITF 10 59 645.7924385314823 1289.5703241297645 2 645.7930297851562 MULTI HCD FTMS 0 0 0 24069 180826.96875 0.01746317671064838 34 -0.75390625 3 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 51.41523569358685 0.07264263333115425 1 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 55.573 0 0 4.3094 0 0 577.2115345685562 0 577.2115345685562 0 35.74031267727719 0 0 0 2 0 0 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4.3094 + + 56 NaN NaN 121769.4 NaN 19736 4334 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24073 95.158 NaN 93740 35 0 6466.9 0.264 -1 WLNKLMKLLQR 11 51 486.9590036169928 1457.8551814511784 3 486.959228515625 MULTI HCD FTMS 0 0 0 24069 56127.6015625 0.6552069437772954 -3 0.0619659423828125 4 Oxidation (M) _WLNKLM(Oxidation (M))KLLQR_ ENSG00000068878|ENST00000404125|PSME4 0.09484139111097674 0.41850472438158626 1 K 1 -1 1.9897 0 0 0.13648 0 0 1087.6350104080127 239.1042421930297 1326.7392526010424 0 0 0 0 0 0 0 0 0 K 0.13648 + + 5 + NaN NaN 94964.8 NaN 19737 4334 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24074 95.162 NaN 295670 35 0 61463 0.261 -1 SCFCPAYPIN 10 46 586.2479857342717 1170.4814185353432 2 586.2478637695312 MULTI HCD FTMS 0 0 0 24069 29937.669921875 0.5069634313027107 -1 0.01628875732421875 5 Carbamidomethyl (C) _SC(Carbamidomethyl (C))FCPAYPIN_ ENSG00000224982|ENST00000426426|TMEM233;ENST00000453450.2_1_12:120031743-120072065:+|nuORF 3.5964929083625545 0.45626689593999237 1 HQN 3 -1 12.435 0 0 1.0624 0 0 292.0296770560462 496.2786959283813 788.3083729844275 0 0 0 0 0 0 0 0 0.4247425010840047 HQN 1.0624 - 91 + NaN NaN 123607 NaN 19738 4334 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24075 95.165 NaN 175480 35 0 27287 0.261 + 23057 REAMSLELF 9 57 548.2787691837011 NaN 0 548.2798461914062 PEAK HCD FTMS 0 0 0 24069 15569.0390625 0.649655577772138 1 -0.0229034423828125 6 Unmodified _REAMSLELF_ ENSG00000261649|ENST00000567390|GOLGA6L7 15.847184025352803 0.21527282152051216 1 {I|L}E{I|L} 3 6 21.682 0 0 1.981 0 0 574.2535725288283 162.05593286685783 736.3095053956861 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 + {I|L}E{I|L} 1.981 + + 23 + NaN NaN 112384.3 NaN 19739 4334 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24077 95.17 NaN 3308200 35 0 433630 0.327 + 5857 FPDFPTPGVVF 11 72 611.8110689456707 1221.6075849581414 2 611.8116455078125 MULTI HCD FTMS 0 0 0 24076 2484423.75 0.40149035953195567 -16 0.37250518798828125 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 96.11092074494114 0.015204628282084255 1 {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 8 3 61.208 0 0 5.0105 0 0 359.14790541816564 0 359.14790541816564 0 42.24595904888066 0 0 0 2.5400990676322905 0 1.579689690656103 0 + {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 5.0105 + + 259 NaN NaN 586146.2 NaN 19740 4335 24076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24078 95.174 NaN 113330 35 0 10960 0.263 + 3993 ERKRKMIIPIM 11 55 472.2838411813653 1413.829694144296 3 472.283447265625 MULTI HCD FTMS 0 0 0 24076 67918.0234375 0.13918028823832654 -19 0.46979522705078125 2 Unmodified _ERKRKMIIPIM_ REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF 0.5059551277355931 0.4167017191902429 1 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.24719 0 0 794.9696000054272 468.80796228580317 1263.7775622912304 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.24719 + + 1 + NaN NaN 99950.2 NaN 19741 4335 24076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24079 95.178 NaN 147970 35 0 24659 0.261 -1 VMRRTSGIF 9 42 541.7924860117005 1081.5704190902009 2 541.792724609375 MULTI HCD FTMS 0 0 0 24076 47262.546875 0.9016259087826021 1 -0.0128936767578125 3 Oxidation (M) _VM(Oxidation (M))RRTSGIF_ ENST00000540872.5_1_10:46261247-46264930:+|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}{I|L}{I|L} 3 -1 31.198 0 0 2.8845 0 0 724.3079972227072 0 724.3079972227072 0 22.156818820794935 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 2.8845 - 96 NaN NaN 100474.6 NaN 19742 4335 24076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24081 95.183 NaN 208910 35 0 35366 0.327 + 10095 IFGVIIDTF 9 46 512.7892801653281 1023.5640073974563 2 512.7893676757812 MULTI HCD FTMS 0 0 0 24080 104332.5859375 0.12064279861402402 16 -0.3728179931640625 1 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 44.40701690623563 0.04511410083598184 1 C{I|L}{I|L}C{I|L}{M(Oxidation (M))|F} 6 6 43.849 0 0 4.284 0 0 313.23875624824376 0 313.23875624824376 0 30.037144051603093 0 0 0 1.3494850021680094 0 0 0 C{I|L}{I|L}C{I|L}{M(Oxidation (M))|F} 4.284 - 55 NaN NaN 117301.6 NaN 19743 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24082 95.187 NaN 153690 35 0 17924 0.261 + 11178 IYIWDLNNF 9 51 599.3004589776755 1196.5863650221509 2 599.3009033203125 MULTI HCD FTMS 0 0 0 24080 53396.56640625 0.006734750425978284 66 -1.3575973510742188 2 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 60.07390631473393 0.0174780869009295 1 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 91.336 0 0 7.633 7.633 90.88 0 0 0 24.13734275855269 86.73184401141008 24.13734275855269 9.208187539523749 0 1.9247425010840047 1.6989700043360187 0.3494850021680094 0 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E[QT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.633;6.8635;6.8635;6.0976;5.7964;5.0268;5.0268;2.0568 +;-;-;-;-;-;-;- + 266 NaN NaN 107710.8 NaN 19744 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24083 95.191 NaN 103840 35 0 16439 0.261 + 6115 FPEGLFYEF 9 36 574.7687124378033 NaN 0 574.7687377929688 PEAK HCD FTMS 0 0 0 24080 50049.31640625 0.03180807388360199 57 -1.1685791015625 3 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 25.399314129420986 0.1511568710901456 1 EY{M(Oxidation (M))|F} 3 6 26.995 0 0 2.3524 0 0 165.0802573437416 540.2455475779925 705.3258049217341 0 0 0 0 0 1.3807196863200843 0 0 0 EY{M(Oxidation (M))|F} 2.3524 - 9 + NaN NaN 92834.7 NaN 19745 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24084 95.194 NaN 166850 35 0 14832 0.261 + 5598 FLQRAWLI 8 47 523.8100640972546 1045.605575261309 2 523.8096313476562 MULTI HCD FTMS 0 0 0 24080 24835.19140625 0.6889835182995748 2 -0.0356292724609375 4 Unmodified _FLQRAWLI_ REV__ENSG00000039139|ENST00000265104|DNAH5 5.230669730166228 0.5342319408533849 1 {I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 30.433 0 0 2.9106 0 0 549.3369719948811 0 549.3369719948811 0 11.84955642535897 0 0 0 0 0 0 0 {I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9106 - 62 + NaN NaN 107784.8 NaN 19746 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24085 95.197 NaN 94614 35 0 11318 0.261 + 10417 IPADIVFVL 9 38 493.79968230260863 985.5848116720173 2 494.3009948730469 MULTI HCD FTMS 0 0 0 24080 39618.0859375 0.06851179013748739 16 -0.3728179931640625 5 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 1 V{M(Oxidation (M))|F}V{I|L} 4 5 38.532 0 0 3.9096 0 0 509.28352553535314 0 509.28352553535314 0 36.05774396488272 0 0 0 1.2614393726401687 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 3.9096 + + 16 NaN NaN 117963.5 NaN 19747 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24086 95.201 NaN 157140 35 0 7536.6 0.261 + 10366 IMDKKFWM 8 76 549.7760649019946 1097.537576870789 2 549.7767333984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _IMDKKFWM_ ENST00000381340.7_1_12:26818868-26818943:-|nuORF 7.289230182591677 0.5311777711368266 1 {I|L}W 2 6 14.949 0 0 1.362 0 0 0 795.3487032525999 795.3487032525999 7.501225267834 0 0 0 0 0 0 0 0 {I|L}W 1.362 - 27 + NaN NaN 113833.5 NaN 19748 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24087 95.204 NaN 59758 35 0 11334 0.261 -1 QMYKLMEQY 9 30 625.2815474826434 NaN 0 625.3244018554688 PEAK HCD FTMS 0 0 0 24080 21688.58203125 0.7666190775348461 -8 0.163055419921875 7 Oxidation (M) _QMYKLM(Oxidation (M))EQY_ ENSG00000115423|ENST00000389394|DNAH6;ENST00000476689.5_1_2:84775422-84811380:+|nuORF;nc|ENSG00000115423|Q9C0G6-3|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6 1.844237919475145 0.28630992268396543 1 G 1 -1 6.9897 0 0 0.55983 0 0 641.2552203541555 547.2413424127561 1188.4965627669117 0 0 0 0 0 0 0 0 0 G 0.55983 - 4 + NaN NaN 97986.9 NaN 19749 4336 24080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24089 95.209 NaN 179570 35 0 13675 0.327 -1 TYVKYQVPC 9 52 579.2875662886274 NaN 0 579.287109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _TYVKYQVPC(Carbamidomethyl (C))_ ENSG00000198854|ENST00000368775|C1orf68 10.823927491677226 0.2427956001690155 1 V{M(Oxidation (M))|F} 2 -1 21.211 0 0 1.834 0 0 264.1096237372231 643.2884286523665 907.3980523895896 0 0 0 0 0 1.1747425010840047 0 0 0 V{M(Oxidation (M))|F} 1.834 - 23 + NaN NaN 109932.9 NaN 19750 4337 24088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24090 95.213 NaN 47667 35 0 4236.8 0.261 + 11786 KEEKEVETIF 10 39 626.3272045103204 NaN 0 626.3092041015625 PEAK HCD FTMS 0 0 0 24088 17332.68359375 0.9720916996088995 2 -0.03220367431640625 2 Unmodified _KEEKEVETIF_ REV__ENSG00000119596|ENST00000325680|YLPM1;REV__nc|ENSG00000119596|P49750-1|YLPM1;REV__nc|ENSG00000119596|P49750-3|YLPM1 1.4819007175156935 0.33891598740166873 1 W 1 -1 6.9897 0 0 0.55889 0 0 514.280738511072 547.2399996393186 1061.5207381503906 0 0 0 0 0 0 0 0 0 W 0.55889 - 15 + NaN NaN 100331.4 NaN 19751 4337 24088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24092 95.218 NaN 377380 35 0 53667 0.327 -1 LEKFELQWM 9 44 620.3083325423382 NaN 0 620.3238525390625 PEAK HCD FTMS 0 0 0 24091 13604.740234375 1 0 0 1 Oxidation (M) _LEKFELQWM(Oxidation (M))_ PARP4-COL9A1|1|fusion 3.5964929083625545 0.27781873954207675 1 V 1 -1 6.9897 0 0 0.56432 0 0 182.07429001795168 954.4361987755093 1136.510488793461 0 0 0 0 0 0 0 0 0 V 0.56432 - 12 + NaN NaN 140554.3 NaN 19752 4338 24091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24093 95.223 NaN 347580 35 0 75319 0.264 + 5912 FPDLFVADFCS 11 68 420.8583664775622 1259.5532700328865 3 420.8586730957031 MULTI HCD FTMS 0 0 0 24091 87079.546875 0.262533125835212 -14 0.28665924072265625 2 Unmodified _FPDLFVADFCS_ REV__ENSG00000244122|ENST00000373426|UGT1A7;REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 6.623454094837244 0.3898724468670146 1 DPE 3 -1 33.5 0 0 2.6597 0 0 900.4053567342858 0 900.4053567342858 0 14.648415687162952 0 0 0 0.3494850021680094 0 0.3807196863200844 0 DPE 2.6597 - 23 NaN NaN 128129 NaN 19753 4338 24091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24094 95.226 NaN 468630 35 0 91262 0.261 + -1 WCSDWLIQ 8 63 554.2503898811688 1106.4862268291374 2 554.2498779296875 MULTI HCD FTMS 0 0 0 24091 113904.5 1 0 0 3 Carbamidomethyl (C) _WC(Carbamidomethyl (C))SDWLIQ_ REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF 9.347437153973935 0.5250182646323369 1 Q{I|L}[C(Carbamidomethyl (C))C]V{I|L}[Q{I|L}] 8 -1 25.935 0 0 2.3439 0 0 130.9778489933613 0 130.9778489933613 0 7.083428324247123 0 0 0 0 0 0 0.805462187404089 Q{I|L}[C(Carbamidomethyl (C))C]V{I|L}[Q{I|L}] 2.3439 - 103 + NaN NaN 158798.9 NaN 19754 4338 24091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24095 95.23 NaN 156030 35 0 13388 0.261 + -1 PFTMMMFF 8 68 550.2187898474688 1098.4230267617374 2 550.21826171875 MULTI HCD FTMS 0 0 0 24091 39499.78515625 0.43617855984374787 -7 0.133392333984375 4 3 Oxidation (M) _PFTM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))FF_ REV__ENSG00000148842|ENST00000369878|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2 5.760428011301431 0.5334459684533844 1 E{M(Oxidation (M))|F} 2 -1 20.886 0 0 1.9014 0 0 804.298143455275 0 804.298143455275 0 17.390690719683093 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F} 1.9014 - 17 NaN NaN 109053.4 NaN 19755 4338 24091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24096 95.233 NaN 106170 35 0 14427 0.261 + 28293 TLSIIPIYF 9 38 533.8126709643354 1065.6107889954708 2 533.811767578125 MULTI HCD FTMS 0 0 0 24091 44305.875 0.4251786587176158 -8 0.15294647216796875 5 Unmodified _TLSIIPIYF_ REV__ENSG00000176742|ENST00000641270|OR51V1;REV__nc|ENSG00000176742|Q9H2C8|OR51V1 30.224811164608877 0.11021837014094292 1 {I|L}Y{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.7955 0 0 624.3838861064593 0 624.3838861064593 0 34.9607625286837 0 0 0 1.4247425010840047 0 0 0 {I|L}Y{M(Oxidation (M))|F} 3.7955 + + 19 NaN NaN 92782.1 NaN 19756 4338 24091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24097 95.236 NaN 70910 35 0 15562 0.261 + 11765 KDSQPWEQ 8 31 509.2362849292369 NaN 0 509.23614501953125 PEAK HCD FTMS 0 0 0 24091 4770.91796875 0.1554409849115892 -2 0.0356292724609375 6 Unmodified _KDSQPWEQ_ CON__Q03247 1.844237919475145 0.38822285293237185 1 R 1 8 6.9897 0 0 0.68765 0 0 130.00466106765504 727.3113299622149 857.31599102987 0 0 0 0 0 0 0 0 0 R 0.68765 - 1 + NaN NaN 93439.4 NaN 19757 4338 24091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24099 95.241 NaN 579670 35 0 121150 0.327 + 7618 FYIESISFL 9 60 559.7919288549228 1117.5693047766456 2 559.7921142578125 MULTI HCD FTMS 0 0 0 24098 301460.6875 0.4739405325549895 5 -0.12097930908203125 1 Unmodified _FYIESISFL_ ENSG00000114541|ENST00000398540|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 117.59872219059416 0.0017018906413822257 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]{I|L}S{M(Oxidation (M))|F}{I|L} 9 2 + 81.833 0 0 7.3224 7.3224 86.37 0 0 0 1.7731749024395782 14.973024840566467 1.7731749024395782 1.7731749024395782 0 1.4247425010840047 1.6989700043360187 1.774227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}TD{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]ETV{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}T{I|L}DS{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}][KS]S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[WK]Y{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][WK]Y{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[HD]{I|L};[Y{M(Oxidation (M))|F}]{I|L}T{I|L}G[YE]{I|L} 7.3224;7.1637;6.2449;5.7975;5.1983;4.4159;4.174;3.3453;2.8026;2.4105 -;-;-;-;-;-;-;-;-;- 530 NaN NaN 166292 NaN 19758 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24100 95.245 NaN 89666 35 0 11088 0.262 -1 QLLLRRWCLL 10 56 457.6082332782322 1369.8028704348967 3 457.9428405761719 MULTI HCD FTMS 0 0 0 24098 16956.962890625 0.07690687112602884 50 -1.0496368408203125 2 Carbamidomethyl (C) _QLLLRRWC(Carbamidomethyl (C))LL_ ENST00000334350.6_1_16:56691630-56693012:+|nuORF 0.15932191953741626 0.4744603884079788 1 {I|L} 1 -1 6.9897 0 0 0.51027 0 0 570.4814725850905 683.2082003229124 1253.6896729080029 0 0 0 0 0 0 0 0 0 {I|L} 0.51027 + + 7 + NaN NaN 95614.4 NaN 19759 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24101 95.249 NaN 220450 35 0 32261 0.261 + 33242 YFHIEWSCS 9 55 586.2479857342717 1170.4814185353432 2 586.2481079101562 MULTI HCD FTMS 0 0 0 24098 23146.5 0.3919620028302211 4 -0.09812164306640625 3 Unmodified _YFHIEWSCS_ REV__ENST00000344442.9_2_4:113578522-113578567:+|nuORF 2.0597508629832335 0.3354026079994024 1 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.93714 0 0 131.9618818130662 775.3405245416624 907.3024063547286 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93714 - 157 + NaN NaN 124357.2 NaN 19760 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24102 95.252 NaN 284890 35 0 31332 0.264 -1 0 57 415.86859634843455 2489.1679192910074 6 416.1947021484375 MULTI HCD FTMS 0 0 0 24098 4322.37353515625 0.9972971578416558 -1 0.02268218994140625 4 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 0.84241 0 0 2225.020776812295 0 2225.020776812295 0 15.484550065040281 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.84241 - 18 + NaN NaN 127134.2 NaN 19761 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24103 95.256 NaN 163400 35 0 31453 0.261 + 31964 VYPGLAVFF 9 50 506.7787972617367 1011.5430415902734 2 506.77880859375 MULTI HCD FTMS 0 0 0 24098 27643.822265625 0.3438645880263445 -6 0.1103973388671875 5 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 36.466142684027034 0.08156716203802528 1 [DP]{M(Oxidation (M))|F}[K{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 4 + 52.268 0 0 5.1671 5.1671 90.6 0 0 0 3.908103009885764 36.04807146599672 3.908103009885764 32.61684426206969 0 1.2614393726401687 0 0.4247425010840047 0 [DP]{M(Oxidation (M))|F}[K{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}[K{I|L}][PA][KP] 5.1671;1.9427 -;- 62 NaN NaN 106291.2 NaN 19762 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24104 95.259 NaN 156140 35 0 13692 0.261 -1 TYVKYQVPC 9 44 579.2875662886274 NaN 0 579.288818359375 PEAK HCD FTMS 0 0 0 24098 27788.83984375 1 0 0 6 Carbamidomethyl (C) _TYVKYQVPC(Carbamidomethyl (C))_ ENSG00000198854|ENST00000368775|C1orf68 10.823927491677226 0.2427956001690155 1 V 1 -1 14.292 0 0 1.2357 0 0 264.110153473936 790.3572046578939 1054.46735813183 0 0 0 0 0 0.7302046884880937 0 0 0 V 1.2357 + + 12 + NaN NaN 119357.6 NaN 19763 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24105 95.262 NaN 128880 35 0 17975 0.261 + 29595 VAGYLVQLLF 10 49 561.831421042616 1121.6482891520318 2 562.8343505859375 MULTI HCD FTMS 0 0 0 24098 5735.29931640625 0.15758510182832583 8 -0.21596527099609375 7 Unmodified _VAGYLVQLLF_ REV__ENSG00000184999|ENST00000332793|SLC22A10 16.942295170755138 0.35263950412107176 1 {I|L}Q{I|L}{M(Oxidation (M))|F} 4 -1 33.716 0 0 3.006 0 0 602.3427240360605 0 602.3427240360605 0 18.73376226923302 0 0 0 0.805462187404089 0 0 0 {I|L}Q{I|L}{M(Oxidation (M))|F} 3.006 - 180 + NaN NaN 102359.6 NaN 19764 4339 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24107 95.267 NaN 1953800 35 0 520560 0.327 + 1095 AYILDTLVF 9 62 527.7947089199433 1053.5748649066866 2 527.7948608398438 MULTI HCD FTMS 0 0 0 24106 1254435.25 0.8484418334188357 2 -0.0523834228515625 1 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 146.00731375242447 1.3047045798573153E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F} 9 0 + 104.13 0 0 9.8839 9.8839 94.503 0 0 0 9.286662482156345 12.3321082505948 9.286662482156345 9.286662482156345 0 3.274227503252014 1.3010299956639813 1.1549471895720984 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TD{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}T{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}D{I|L}TV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DTV{I|L}{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}D{I|L}TV{M(Oxidation (M))|F};[{I|L}V]TD{M(Oxidation (M))|F}{I|L}TV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}TV{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}DTV{I|L}{M(Oxidation (M))|F} 9.8839;9.0025;8.9311;8.9094;8.6248;8.3846;7.7434;7.6719;7.6502;7.5031 +;-;-;-;-;-;-;-;-;- + 709 NaN NaN 379429.9 NaN 19765 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24108 95.272 NaN 882100 35 0 56598 0.261 -1 0 98 538.327211786718 1074.6398706402358 2 538.3272094726562 MULTI HCD FTMS 0 0 0 24106 804505.3125 0.9893308687331391 1 -0.02620697021484375 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3008 0 0 909.5610875365234 0 909.5610875365234 0 4.426806100157561 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3008 - 380 + NaN NaN 223542.3 NaN 19766 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24109 95.275 NaN 1263500 35 0 132640 0.261 -1 0 93 622.8020327154419 1243.5895124976837 2 622.8018188476562 MULTI HCD FTMS 0 0 0 24106 527754 0.3755054543488174 -8 0.15944671630859375 3 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PTQ{M(Oxidation (M))|F}V 9 -1 79.344 0 0 6.3803 0 0 0 162.05701695715234 162.05701695715234 61.12572235417012 0 0 0 0 2.9247425010840047 1.3979400086720375 1.584121882396211 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PTQ{M(Oxidation (M))|F}V 6.3803 - 2256 NaN NaN 276566.9 NaN 19767 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24110 95.279 NaN 573840 35 0 107500 0.262 + 28266 TLMEEVLLL 9 62 530.8015125861392 1059.5884722390783 2 530.8013916015625 MULTI HCD FTMS 0 0 0 24106 301314.59375 0.7836397284864066 6 -0.15714263916015625 4 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 21.74664581756881 0.17247014374749275 1 PV{I|L}{I|L}{I|L} 5 5 48.201 0 0 4.549 0 0 506.21650893379064 0 506.21650893379064 0 42.71652514092061 0 0 0 1.3252574989159953 0 0 0 PV{I|L}{I|L}{I|L} 4.549 - 121 NaN NaN 181152.8 NaN 19768 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24111 95.282 NaN 392770 35 0 65011 0.261 -1 SRCYSSNEVSS 11 53 638.2666965736914 1274.5188402141828 2 638.2661743164062 MULTI HCD FTMS 0 0 0 24106 188382.953125 0.7500058475093965 -8 0.15944671630859375 5 Carbamidomethyl (C) _SRC(Carbamidomethyl (C))YSSNEVSS_ sp|P0DKA0|VE8E2_HPV16ProteinE8^E2COS=Humanpapillomavirustype16OX=333760PE=1SV=1 4.189502756095605 0.4005469306127019 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.358119019524 0 939.358119019524 0 22.078343878162343 0 0 0 0 0 0 0 VMS 1.8193 - 21 NaN NaN 137699.2 NaN 19769 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24112 95.285 NaN 308950 35 0 41766 0.263 + 4980 FAVVNGHRF 9 45 523.7804033220552 1045.5462537109104 2 523.76318359375 MULTI HCD FTMS 0 0 0 24106 6593.71044921875 0.06023982427994956 19 -0.4178619384765625 6 Unmodified _FAVVNGHRF_ REV__ENSG00000170925|ENST00000302917|TEX13B 8.593279151180031 0.2858735984551981 1 {I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 36.454 0 0 3.4866 0 0 436.19305654469787 0 436.19305654469787 0 21.760912590556813 0 0 0 0 0 0 0 {I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4866 - 48 + NaN NaN 124952.1 NaN 19770 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24113 95.289 NaN 145750 35 0 22267 0.261 + 28150 TITPIVLYF 9 44 533.8126709643354 1065.6107889954708 2 533.8131103515625 MULTI HCD FTMS 0 0 0 24106 55156.92578125 0.5293101134479108 -6 0.120330810546875 7 Unmodified _TITPIVLYF_ ENSG00000172057|ENST00000304046|ORMDL3;nc|ENSG00000172057|Q8N138-4|ORMDL3 46.92087301778293 0.0358782797343276 1 V{I|L}Y{M(Oxidation (M))|F} 4 5 43.928 0 0 4.1223 0 0 525.3164297198833 0 525.3164297198833 0 38.44335023848103 0 0 0 1.5 0 0 0 + V{I|L}Y{M(Oxidation (M))|F} 4.1223 + + 23 + NaN NaN 107516.8 NaN 19771 4340 24106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24115 95.293 NaN 903870 35 0 72299 0.327 + 30552 VNFEFPEFQL 10 75 635.311197668403 1268.607842403606 2 635.311279296875 MULTI HCD FTMS 0 0 0 24114 671242 0.7700791018332762 3 -0.06855010986328125 1 Unmodified _VNFEFPEFQL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000484240.1_1_17:44798950-44799232:-|nuORF 87.12335221954112 0.0012232043428923125 1 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 10 4 + 82.168 0 0 6.477 6.477 85.603 0 0 0 3.5651259299024787 16.53212513775344 3.5651259299024787 3.5651259299024787 0 1.642159058960253 0 0.7887254899964358 1.5743923658886185 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]NV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}V]NE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VPE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L} 6.477;6.196;6.0025;5.9487;5.7738;5.7546;5.7321;5.6361;5.5259;5.4736 -;+;-;-;-;-;-;-;-;- + 1888 NaN NaN 235431.6 NaN 19772 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24116 95.298 NaN 499430 35 0 28322 0.262 + 22510 QRRVRPALP 9 92 546.8406375779383 1091.6667222226765 2 546.8406982421875 MULTI HCD FTMS 0 0 0 24114 429339.4375 0.869325944505329 3 -0.06855010986328125 2 Unmodified _QRRVRPALP_ ENST00000546828.6_1_12:98909466-98909845:+|nuORF 16.942295170755138 0.21397866736869717 1 A 1 8 9.9743 0 0 0.91367 0 0 281.18216449301104 736.4325777259429 1017.614742218954 0 0 0 0 0 0.75 0 0 0 + A 0.91367 + + 27 + NaN NaN 172261.5 NaN 19773 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24117 95.301 NaN 443040 35 0 93122 0.261 + 22930 QYSSFFLYL 9 57 584.2898495492815 1166.5651461653629 2 584.2900390625 MULTI HCD FTMS 0 0 0 24114 218029.875 0.6425110340477741 3 -0.06855010986328125 3 Unmodified _QYSSFFLYL_ ENSG00000148110|ENST00000375344|MFSD14B;ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B 36.12702656103203 0.08312389501731911 1 {M(Oxidation (M))|F}{I|L}Y{I|L} 4 5 46.938 0 0 4.0236 0 0 612.2537786383596 0 612.2537786383596 0 20.996075289514096 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}{I|L}Y{I|L} 4.0236 + + 46 NaN NaN 152086.5 NaN 19774 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24118 95.305 NaN 89401 35 0 5164.9 0.263 + 7076 FQVKLLYRMR 10 50 451.93248683120106 1352.7756310938032 3 451.93255615234375 MULTI HCD FTMS 0 0 0 24114 77301.8203125 0.10765451209578937 52 -1.0578384399414062 4 Unmodified _FQVKLLYRMR_ REV__ENSG00000129484|ENST00000429687|PARP2;REV__nc|ENSG00000129484|Q9UGN5|PARP2 0.6268255596534771 0.47198581731947004 1 K 1 -1 2.2185 0 0 0.164 0 0 850.4773960857939 371.17136560611567 1221.6487616919096 0 0 0 0 0 0 0 0 0 K 0.164 + + 7 + NaN NaN 107514.5 NaN 19775 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24119 95.308 NaN 129630 35 0 40220 0.261 -1 WLNKLMKLLQR 11 53 486.9590036169928 1457.8551814511784 3 486.95892333984375 MULTI HCD FTMS 0 0 0 24114 55556.45703125 0.6485396739785187 4 -0.09481048583984375 5 Oxidation (M) _WLNKLM(Oxidation (M))KLLQR_ ENSG00000068878|ENST00000404125|PSME4 0.4545168274142398 0.41692731010159206 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.21257 0 0 869.5174261794972 438.2867830865844 1307.8042092660817 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.21257 + + 5 + NaN NaN 100676.8 NaN 19776 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24120 95.311 NaN 283550 35 0 33823 0.261 + 14087 KYWPLFVLF 9 32 606.8447917263426 1211.675030519485 2 606.84521484375 MULTI HCD FTMS 0 0 0 24114 100672.6328125 0.30750935240440147 -3 0.07511138916015625 6 Unmodified _KYWPLFVLF_ ENSG00000104660|ENST00000321250|LEPROTL1;LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;nc|ENSG00000104660|O95214-2|LEPROTL1 24.990960013464015 0.14443998892849796 1 [WY]K[{I|L}P]{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 9 2 + 55.111 0 0 4.5483 4.5483 90.491 0 0 0 5.6424927368725974 55.11107503885448 5.6424927368725974 55.11107503885448 0 1.5 0 0 0.4247425010840047 [WY]K[{I|L}P]{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 4.5483 - 28 NaN NaN 114299.7 NaN 19777 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24121 95.315 NaN 137200 35 0 13797 0.261 + -1 GAVKDSMPRVQ 11 50 602.3136763354968 1202.6127997377935 2 602.8179931640625 MULTI HCD FTMS 0 0 0 24114 22817.224609375 0.6828412964705 -1 0.02620697021484375 7 Oxidation (M) _GAVKDSM(Oxidation (M))PRVQ_ REV__ENSG00000139116|ENST00000361418|KIF21A;REV__nc|ENSG00000139116|Q7Z4S6-2|KIF21A;REV__nc|ENSG00000139116|Q7Z4S6-3|KIF21A;REV__nc|ENSG00000139116|Q7Z4S6-4|KIF21A;REV__nc|ENSG00000139116|Q7Z4S6-5|KIF21A;REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A 15.248480904072842 0.3242218977034194 1 G[RN]T{[VA]|[{I|L}G]}VQ 8 -1 26.604 0 0 2.2122 0 0 359.1472340314469 0 359.1472340314469 0 5.981362441963327 0 0 0 0 0 0.9247425010840047 0.4247425010840047 G[RN]T{[VA]|[{I|L}G]}VQ 2.2122 - 79 NaN NaN 126093.8 NaN 19778 4341 24114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24123 95.32 NaN 6060800 35 0 817350 0.327 + 5858 FPDFPTPGVVF 11 72 611.8110689456707 1221.6075849581414 2 611.8114013671875 MULTI HCD FTMS 0 0 0 24122 3832907.5 0.6194093943224176 -9 0.18900299072265625 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 75.76082778847304 0.009743817708848341 1 {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 8 3 52.445 0 0 4.2931 0 0 359.14813491878004 0 359.14813491878004 0 41.47583320253139 0 0 0 2.305945812348389 0 0.8494850021680094 0 + {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 4.2931 + + 295 NaN NaN 647283.1 NaN 19779 4342 24122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24124 95.324 NaN 1082600 35 0 314790 0.261 + 977 AYFNFPELL 9 77 557.2843863626786 1112.554219792157 2 557.284423828125 MULTI HCD FTMS 0 0 0 24122 483230.5 0.006315199799682796 -12 0.25423431396484375 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 114.6490535036381 0.0021834323520089267 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 98.048 0 0 8.8129 8.8129 96.31 0 0 0 18.714461368881032 64.42734659086113 18.714461368881032 25.31743128760553 0 2.4559771852360797 1.0457574905606752 0.6109243748081782 1.610924374808178 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GGE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[R{I|L}]NC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[R{I|L}]GGC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG[R{I|L}]NC{I|L} 8.8129;6.5373;6.1686;5.5391;4.8707;4.0431;3.9874;3.9249;3.0973;3.0973 +;-;-;-;-;-;-;-;-;- + 1274 NaN NaN 262419.2 NaN 19780 4342 24122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24125 95.328 NaN 214150 35 0 34214 0.261 + 10096 IFGVIIDTF 9 51 512.7892801653281 1023.5640073974563 2 512.7894287109375 MULTI HCD FTMS 0 0 0 24122 91626.21875 0.10595005728164966 22 -0.48973846435546875 3 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 44.40701690623563 0.04511410083598184 1 {I|L}{I|L}C{I|L}{M(Oxidation (M))|F} 5 6 42.435 0 0 4.1458 0 0 416.2415350418133 0 416.2415350418133 0 32.74227503252014 0 0 0 1.774227503252014 0 0 0 {I|L}{I|L}C{I|L}{M(Oxidation (M))|F} 4.1458 - 96 NaN NaN 115676.2 NaN 19781 4342 24122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24126 95.331 NaN 82733 35 0 15621 0.261 + 5139 FEVFVDTII 9 38 541.7924860117005 1081.5704190902009 2 541.7933959960938 MULTI HCD FTMS 0 0 0 24122 28420.1796875 0.542170746876557 8 -0.2008056640625 4 Unmodified _FEVFVDTII_ tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1 3.944395688203298 0.32111559684428237 1 {I|L} 1 8 4.6041 0 0 0.42569 0 0 131.09063500992585 834.3701589174756 965.4607939274015 0 0 0 0 0 0 0 0 0 + {I|L} 0.42569 + + 3 + NaN NaN 96749.6 NaN 19782 4342 24122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24127 95.334 NaN 117280 35 0 9600.5 0.261 + 23401 RLFYNYVTQ 9 48 602.3136763354968 1202.6127997377935 2 602.81640625 MULTI HCD FTMS 0 0 0 24122 33415.12109375 1 0 0 5 Unmodified _RLFYNYVTQ_ REV__AGAP3|p.S475Lfs*180|1|0.12|ENSG00000133612|chr7:151138179-151138179|C/-|frameshift_variant;REV__ENSG00000133612|ENST00000397238|AGAP3;REV__ENST00000490839.1_1_7:150814483-150814980:+|nuORF;REV__nc|ENSG00000133612|Q96P47-2|AGAP3;REV__nc|ENSG00000133612|Q96P47-3|AGAP3;REV__nc|ENSG00000133612|Q96P47-6|AGAP3;REV__nc|ENSG00000133612|Q96P47|AGAP3 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}[DP]Q 4 -1 20.445 0 0 1.7001 0 0 697.37797743965 0 697.37797743965 0 -0.01734675796754459 -0.01734675796754459 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}[DP]Q 1.7001 - 21 NaN NaN 96046.8 NaN 19783 4342 24122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24129 95.339 NaN 1050700 35 0 125940 0.327 -1 0 77 548.345952256212 547.3386757896119 1 548.3339233398438 MULTI HCD FTMS 0 0 0 24128 18595.4375 0.14893514775779085 17 -0.36545562744140625 1 NaN NaN 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 26.198 0 0 4.7864 0 0 122.10722133165679 0 122.10722133165679 0 17.245462655597095 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.7864 - 39 + NaN NaN 253335.9 NaN 19784 4343 24128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24130 95.344 NaN 217660 35 0 13529 0.261 + 18495 MRKGIRWLIEL 11 66 472.2838411813653 1413.829694144296 3 472.28375244140625 MULTI HCD FTMS 0 0 0 24128 80437.7109375 0.16483612488833246 -11 0.23134613037109375 2 Unmodified _MRKGIRWLIEL_ ENSG00000183735|ENST00000331710|TBK1 1.4551175022131473 0.41253901545122046 1 [EP]{I|L} 3 9 17.536 0 0 1.2403 0 0 0 1071.627062878924 1071.627062878924 12.051368718728813 0 0 0 0 0 1.0969100130080565 0 0 [EP]{I|L} 1.2403 - 16 NaN NaN 122919.8 NaN 19785 4343 24128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24131 95.347 NaN 192670 35 0 50560 0.261 -1 YLGYPVLQI 9 35 554.3078377963003 1106.6011226594005 2 554.3079223632812 MULTI HCD FTMS 0 0 0 24128 35987.953125 0.03172207198164264 28 -0.6036911010742188 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YLGYPVLQI_ ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549 11.640296217721598 0.25978676193971967 1 {I|L}Q{I|L} 3 -1 33.188 0 0 2.9991 0 0 734.3647564853215 0 734.3647564853215 0 17.703037561203843 0 0 0 1 0 0 0 {I|L}Q{I|L} 2.9991 + + 17 NaN NaN 109624.3 NaN 19786 4343 24128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24132 95.35 NaN 109890 35 0 30942 0.263 + 3257 EEAAIEENKRN 11 39 434.8822665355152 NaN 0 434.8822937011719 PEAK HCD FTMS 0 0 0 24128 53828.86328125 0.3225426658642377 -9 0.192230224609375 4 Unmodified _EEAAIEENKRN_ ENSG00000080345|ENST00000444746|RIF1;nc|ENSG00000080345|Q5UIP0-2|RIF1 1.214830529360525 0.33867401910978034 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98835.5 NaN 19787 4343 24128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24133 95.354 NaN 116290 35 0 18392 0.261 + 32081 VYQVLIQFL 9 39 561.831421042616 1121.6482891520318 2 561.8316650390625 MULTI HCD FTMS 0 0 0 24128 30559.642578125 0.21722889803226195 10 -0.22902679443359375 5 Unmodified _VYQVLIQFL_ ENSG00000152104|ENST00000366956|PTPN14 25.399314129420986 0.14091189997036632 1 {I|L}{I|L}Q{I|L}{M(Oxidation (M))|F} 5 6 47.423 0 0 4.228 0 0 489.25804364597553 0 489.25804364597553 0 44.94850021680094 0 0 0 1.3494850021680094 0 0 0.3494850021680094 {I|L}{I|L}Q{I|L}{M(Oxidation (M))|F} 4.228 - 122 + NaN NaN 114090.8 NaN 19788 4343 24128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24134 95.357 NaN 51611 35 0 5476.8 0.261 + 35611 YYIFIPSKF 9 37 589.3189399311515 NaN 0 589.7634887695312 PEAK HCD FTMS 0 0 0 24128 7669.1123046875 0.4755219319345716 -1 0.0195159912109375 6 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 9.38312468134398 0.24977752951804 1 W{I|L} 2 8 14.196 0 0 1.2065 0 0 551.3234134542967 323.10264002017817 874.4260534744749 0 0 0 0 0 0.9247425010840047 0 0 0 W{I|L} 1.2065 - 7 + NaN NaN 87706.9 NaN 19789 4343 24128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24136 95.362 NaN 509010 35 0 69768 0.326 -1 VMICLRVCVF 10 52 620.3242665468714 1238.6339801605427 2 620.3240966796875 MULTI HCD FTMS 0 0 0 24135 584451.625 0.6956330978558266 -10 0.215087890625 1 Carbamidomethyl (C) _VMICLRVC(Carbamidomethyl (C))VF_ ENST00000471841.5_1_3:179109981-179110074:+|nuORF 3.5964929083625545 0.45626689593999237 1 V[RP][TP]{M(Oxidation (M))|F} 6 -1 7.7204 0 0 0.6233 0 0 182.10631313412233 356.12409387760005 538.2304070117224 0 0 0 0 0 0 0 0.805462187404089 0 V[RP][TP]{M(Oxidation (M))|F} 0.6233 - 17 + NaN NaN 158346 NaN 19790 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24137 95.366 NaN 473640 35 0 100870 0.264 + 5913 FPDLFVADFCS 11 60 420.8583664775622 1259.5532700328865 3 420.8585510253906 MULTI HCD FTMS 0 0 0 24135 181529.9375 0.5472883545542182 -8 0.179290771484375 2 Unmodified _FPDLFVADFCS_ REV__ENSG00000244122|ENST00000373426|UGT1A7;REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 9.764250979337305 0.37200617284565546 1 PWMP[RN]DPE 9 -1 47.942 0 0 3.8063 0 0 119.07342726875156 0 119.07342726875156 0 29.090475125574855 0 0 0 0.7302046884880937 0 0.3807196863200844 0 PWMP[RN]DPE 3.8063 - 93 NaN NaN 166490.7 NaN 19791 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24138 95.37 NaN 206220 35 0 66189 0.261 + 34659 YPSPFFVF 8 41 502.2496475515007 1002.4847421698014 2 502.2498474121094 MULTI HCD FTMS 0 0 0 24135 126090.9921875 0.6003090803904341 -2 0.0423736572265625 3 Unmodified _YPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 24.67388899826682 0.4122521268485776 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 4 45.433 0 0 4.532 0 0 444.2056141584 0 444.2056141584 0 34.97547537623447 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.532 + + 29 NaN NaN 116856.2 NaN 19792 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24139 95.373 NaN 312970 35 0 27963 0.262 + 6030 FPDSSTPFSLF 11 65 415.5325320977093 1243.575766893328 3 415.86676025390625 MULTI HCD FTMS 0 0 0 24135 62574.80859375 0.48512988996416573 -6 0.1436614990234375 4 Unmodified _FPDSSTPFSLF_ ENST00000522067.1_1_1:233160928-233161282:-|nuORF 8.745405648335112 0.3805662881914433 1 V{M(Oxidation (M))|F} 2 10 24.464 0 0 1.9672 0 0 979.4296620122717 0 979.4296620122717 0 5 0 0 0 0.3494850021680094 0 0 0 V{M(Oxidation (M))|F} 1.9672 - 25 + NaN NaN 138856.9 NaN 19793 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24140 95.377 NaN 115780 35 0 18645 0.261 + -1 EPFMLSCEI 9 40 542.737275999879 1083.4599990665579 2 542.7366333007812 MULTI HCD FTMS 0 0 0 24135 38267.35546875 1 0 0 5 Oxidation (M) _EPFM(Oxidation (M))LSCEI_ REV__ENST00000379644.8_2_8:43055194-43055551:+|nuORF 3.944395688203298 0.32111559684428237 1 R 1 -1 2.4743 0 0 0.22837 0 0 541.6971339315954 382.6333407037719 924.3304746353674 0 0 0 0 0 0 0 0 0 R 0.22837 - 3 + NaN NaN 104893.6 NaN 19794 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24141 95.38 NaN 62110 35 0 7867.1 0.261 -1 0 40 499.117006860396 NaN 0 498.74493408203125 PEAK HCD FTMS 0 0 0 24135 19604.3984375 1 0 0 6 NaN NaN 1 D 1 -1 6.9897 0 0 0.70162 0 0 165.82263451091643 712.3480929010374 878.1707274119537 0 0 0 0 0 0 0 0 0 D 0.70162 - 12 + NaN NaN 90448.4 NaN 19795 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24142 95.383 NaN 168920 35 0 13426 0.261 + -1 YTVLMDSVTL 10 48 579.2926815883864 NaN 0 579.2926025390625 PEAK HCD FTMS 0 0 0 24135 61639.3046875 1 0 0 7 Oxidation (M) _YTVLM(Oxidation (M))DSVTL_ REV__ENSG00000149488|ENST00000358864|TMC2;REV__nc|ENSG00000149488|Q8TDI7-3|TMC2 9.38312468134398 0.33215363477037435 1 V 1 -1 7.6587 0 0 0.66219 0 0 264.13588700314136 790.3606552622156 1054.496542265357 0 0 0 0 0 0.3054621874040891 0 0 0 V 0.66219 + + 20 + NaN NaN 110549.6 NaN 19796 4344 24135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24144 95.388 NaN 289410 35 0 48173 0.326 + 7619 FYIESISFL 9 56 559.7919288549228 1117.5693047766456 2 559.7916259765625 MULTI HCD FTMS 0 0 0 24143 138885.625 0.2183486265575924 11 -0.2229461669921875 1 Unmodified _FYIESISFL_ ENSG00000114541|ENST00000398540|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 71.13359017698441 0.008721403657255008 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}][KS]S{M(Oxidation (M))|F}{I|L} 9 4 + 62.113 0 0 5.5579 5.5579 83.745 0 0 0 3.0225622685225773 16.478174818886373 3.0225622685225773 3.0225622685225773 0 0.9247425010840047 1.6989700043360187 1.274227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}][KS]S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}ES{I|L}S{M(Oxidation (M))|F}{I|L} 5.5579;5.2874 -;+ + 136 NaN NaN 143706.7 NaN 19797 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24145 95.393 NaN 163050 35 0 32807 0.261 + -1 VMGIGFVIL 9 42 482.78029117146394 963.5460294097279 2 482.7804260253906 MULTI HCD FTMS 0 0 0 24143 104279.6640625 0.6782539177788056 -1 0.0262603759765625 2 Oxidation (M) _VM(Oxidation (M))GIGFVIL_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-2|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 20.871210003555333 0.18003371494288972 1 RV{I|L}{I|L} 4 -1 37.713 0 0 3.914 0 0 464.2053395001969 0 464.2053395001969 0 37.71271006008984 0 0 0 1 0 0 0 RV{I|L}{I|L} 3.914 - 16 NaN NaN 108279.1 NaN 19798 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24146 95.396 NaN 162550 35 0 31413 0.261 + -1 WCSDWLIQ 8 35 554.2503898811688 1106.4862268291374 2 554.2506713867188 MULTI HCD FTMS 0 0 0 24143 38569.1015625 0.33860911169005614 7 -0.167266845703125 3 Carbamidomethyl (C) _WC(Carbamidomethyl (C))SDWLIQ_ REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF 5.230669730166228 0.5342319408533849 1 Q{I|L}[C(Carbamidomethyl (C))C]V{I|L}[Q{I|L}] 8 -1 26.203 0 0 2.3681 0 0 130.97776219821725 0 130.97776219821725 0 22.22357194224834 0 0 0 0 0 0 0.3807196863200844 Q{I|L}[C(Carbamidomethyl (C))C]V{I|L}[Q{I|L}] 2.3681 - 57 + NaN NaN 100733.7 NaN 19799 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24147 95.4 NaN 351300 35 0 30623 0.263 -1 YKFPFTHCF 9 65 416.19543432210924 1245.5644735665278 3 416.5297546386719 MULTI HCD FTMS 0 0 0 24143 69344.84375 0.7647367162261545 1 -0.03612518310546875 4 Carbamidomethyl (C) _YKFPFTHC(Carbamidomethyl (C))F_ chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|78 4.897010918128616 0.31389406404703984 1 V{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9641 0 0 981.4170869471903 0 981.4170869471903 0 11.760912590556813 0 0 0 0.3494850021680094 0 0 0 V{M(Oxidation (M))|F} 1.9641 - 20 + NaN NaN 134666.1 NaN 19800 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24148 95.403 NaN 144920 35 0 18239 0.261 + 11179 IYIWDLNNF 9 48 599.3004589776755 1196.5863650221509 2 599.3013916015625 MULTI HCD FTMS 0 0 0 24143 37000.56640625 0.004666771613553838 75 -1.5523452758789062 5 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 24.990960013464015 0.14443998892849796 1 D{I|L}NN{M(Oxidation (M))|F} 5 4 43.271 0 0 3.6162 0 0 575.3106556623062 0 575.3106556623062 0 17.073259432077563 0 0 0 0.8807196863200843 0 0 0 + D{I|L}NN{M(Oxidation (M))|F} 3.6162 + + 43 NaN NaN 119836.6 NaN 19801 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24149 95.406 NaN 283880 35 0 17729 0.261 -1 MMPMTFYF 8 74 550.2187898474688 1098.4230267617374 2 550.2188720703125 MULTI HCD FTMS 0 0 0 24143 90558.75 1 0 0 6 2 Oxidation (M) _M(Oxidation (M))MPM(Oxidation (M))TFYF_ ENSG00000136868|ENST00000374212|SLC31A1;ENST00000451221.1_1_3:172321509-172321743:-|nuORF 5.230669730166228 0.5342319408533849 1 Y{I|L}{M(Oxidation (M))|F} 3 -1 25.317 0 0 2.3049 0 0 657.1981560115406 0 657.1981560115406 0 14.872118693881546 0 0 0 0.2614393726401688 0 0 0 Y{I|L}{M(Oxidation (M))|F} 2.3049 - 98 + NaN NaN 121370.8 NaN 19802 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24150 95.41 NaN 453290 35 0 64961 0.261 + 18740 NAAAIFDLF 9 60 491.25562485881875 980.4966967844375 2 491.2551574707031 MULTI HCD FTMS 0 0 0 24143 97832.265625 0.13216205265218023 -9 0.2055511474609375 7 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 88.95385435242217 0.004553379958619559 1 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8 3 + 72.795 0 0 7.4243 7.4243 93.198 0 0 0 12.613291624666815 41.14713092102143 12.613291624666815 16.782153498034248 0 2.2302046884880937 0 0 1.0138793319624577 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]NK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}P[{M(Oxidation (M))|F}T]NK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QP]SK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]GGK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}P[{M(Oxidation (M))|F}T]GGK 7.4243;5.7127;3.0247;2.7127;2.2885;2.0801;1.9765;1.768 -;+;-;-;-;-;-;- + 484 NaN NaN 151973.2 NaN 19803 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24151 95.413 NaN 129750 35 0 20693 0.261 + 6116 FPEGLFYEF 9 52 574.7692735592603 NaN 0 574.7689208984375 PEAK HCD FTMS 0 0 0 24143 41308.3515625 0.7311198007138952 -2 0.0491180419921875 8 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 25.399314129420986 0.1511568710901456 1 EY{M(Oxidation (M))|F} 3 6 26.682 0 0 2.3252 0 0 165.081032278671 540.2464424271164 705.3274747057874 0 0 0 0 0 1.3494850021680094 0 0 0 EY{M(Oxidation (M))|F} 2.3252 - 22 + NaN NaN 99671.3 NaN 19804 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24152 95.416 NaN 261700 35 0 21791 0.261 + 7766 FYNPFQFEI 9 53 602.7873747336658 1203.5601965341316 2 602.7891845703125 MULTI HCD FTMS 0 0 0 24143 39898.23046875 0.03796796747813712 -9 0.2055511474609375 9 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 24.990960013464015 0.14443998892849796 1 Q{M(Oxidation (M))|F}{I|L}E 4 7 36.67 0 0 3.0468 0 0 668.2969833634834 0 668.2969833634834 0 18.566147098514705 0 0 0 0.9247425010840047 0 0 0 Q{M(Oxidation (M))|F}{I|L}E 3.0468 - 132 NaN NaN 122015.7 NaN 19805 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24153 95.419 NaN 57284 35 0 7613.7 0.262 + 5000 FCFFGFHL 8 32 509.2362849292369 NaN 0 509.2364196777344 PEAK HCD FTMS 0 0 0 24143 8275.5625 0.26962559283626614 5 -0.132171630859375 10 Unmodified _FCFFGFHL_ REV__ENST00000436679.2_1_11:73840908-73844654:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92324 NaN 19806 4345 24143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24155 95.424 NaN 1135700 35 0 120590 0.327 -1 0 96 622.8020327154419 1243.5895124976837 2 622.8018188476562 MULTI HCD FTMS 0 0 0 24154 928619.4375 0.6607276568165864 -2 0.06238555908203125 1 NaN NaN 1 PTP{M(Oxidation (M))|F}DPE 7 -1 77.255 0 0 6.2123 0 0 442.21910292793126 0 442.21910292793126 0 43.60370700613345 0 0 0 1.8851518780601921 0 1.031234684152075 0 PTP{M(Oxidation (M))|F}DPE 6.2123 - 2338 NaN NaN 274972.9 NaN 19807 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24156 95.429 NaN 2328800 35 0 229850 0.261 -1 0 106 568.2756516861751 1134.5367504391502 2 568.2758178710938 MULTI HCD FTMS 0 0 0 24154 1664388.375 0.17982802285573518 -8 0.20604705810546875 2 NaN NaN 1 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P 6 -1 72.6 0 0 6.3991 0 0 0 392.17966638736567 392.17966638736567 19.855997203748004 0 0 0 0 2.024227503252014 2 0 0.3252574989159953 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P 6.3991 - 4945 + NaN NaN 447487.2 NaN 19808 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24157 95.432 NaN 480320 35 0 124540 0.261 + 1096 AYILDTLVF 9 51 527.7947089199433 1053.5748649066866 2 527.7947998046875 MULTI HCD FTMS 0 0 0 24154 520980.4375 0.3523670094314132 8 -0.15975189208984375 3 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 104.79918948944588 0.003791450360204016 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F} 9 0 + 99.391 0 0 9.4336 9.4336 97.67 0 0 0 16.0827208845118 92.40085961185265 16.0827208845118 36.79297219607513 0 3.2302046884880937 1.3010299956639813 0.8494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{M(Oxidation (M))|F}V]{I|L}{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[{M(Oxidation (M))|F}V]{I|L}{[ES]|[DT]|[{I|L}C]} 9.4336;5.9414;2.7126;2.238 +;-;-;- + 237 NaN NaN 162687.6 NaN 19809 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24158 95.436 NaN 463420 35 0 44061 0.261 -1 0 86 538.327211786718 1074.6398706402358 2 538.3272705078125 MULTI HCD FTMS 0 0 0 24154 348256.5 0.42826430147030564 7 -0.1437835693359375 4 NaN NaN 1 {[QN]|[E{I|L}]|[KN]}K[{I|L}A]KQV{M(Oxidation (M))|F} 9 -1 {[QN]|[E{I|L}]|[KN]}K[{I|L}A]KQV + + 14.604 -14.49 -1.593 1.359 1.359 58.845 0 0 0 0 1.1164216138797656 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}K[{I|L}A]KQV{M(Oxidation (M))|F} 1.359 - 176 + NaN NaN 154714.8 NaN 19810 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24159 95.439 NaN 2004000 35 0 733930 0.261 -1 CEERGHCYL 9 79 583.7400846686755 1165.465616404151 2 583.7401733398438 MULTI HCD FTMS 0 0 0 24154 666839.25 0.1930710172452967 -8 0.20604705810546875 5 Carbamidomethyl (C) _CEERGHC(Carbamidomethyl (C))YL_ ENSG00000213203|ENST00000307194|GIMAP1 3.5964929083625545 0.32375295897743744 1 [Y{I|L}]{I|L} 3 -1 25.686 0 0 2.204 0 0 0 773.2108726958571 773.2108726958571 9.673392606792035 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L} 2.204 - 66 NaN NaN 392769.2 NaN 19811 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24160 95.442 NaN 388010 35 0 39207 0.261 + 15050 LLSIEEMLI 9 67 530.8015125861392 1059.5884722390783 2 530.801513671875 MULTI HCD FTMS 0 0 0 24154 126110.5859375 0.32798034802562276 12 -0.238006591796875 6 Unmodified _LLSIEEMLI_ ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772-2|FPGT;nc|ENSG00000254685|O14772|FPGT 18.13498045792455 0.20367413111508956 1 PV{I|L}{I|L}{I|L} 5 6 36.96 0 0 3.4882 0 0 506.21617324043126 0 506.21617324043126 0 21.365735234869124 0 0 0 0.9247425010840047 0 0 0 PV{I|L}{I|L}{I|L} 3.4882 - 272 NaN NaN 140215.3 NaN 19812 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24161 95.445 NaN 569500 35 0 147960 0.261 -1 LIQDTCADLC 10 54 576.2579937864651 1150.5014346397302 2 576.2577514648438 MULTI HCD FTMS 0 0 0 24154 191931.21875 0.16747186860439395 -10 0.24167633056640625 7 Carbamidomethyl (C) _LIQDTC(Carbamidomethyl (C))ADLC_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 12.240655878213236 0.39661705172222156 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}C{I|L} 9 -1 + 36.008 0 0 3.1298 3.1298 88.252 0 0 0 11.721719216660532 30.523875731196604 11.721719216660532 36.008425796236885 0 0.6861818737241735 2 0 0.3494850021680094 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}C{I|L} 3.1298 - 20 NaN NaN 163494.8 NaN 19813 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24162 95.449 NaN 408020 35 0 51148 0.261 -1 MKMRLCFLL 9 56 585.8133548172787 1169.6121567013572 2 585.8137817382812 MULTI HCD FTMS 0 0 0 24154 82987.203125 0.7966502829692068 9 -0.1757354736328125 8 Oxidation (M) _M(Oxidation (M))KMRLCFLL_ ENST00000263636.4_1_2:160661544-160661592:-|nuORF 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 22.792 0 0 1.9487 0 0 778.3667469709 0 778.3667469709 0 15.21168889147761 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 1.9487 + + 26 NaN NaN 163927.4 NaN 19814 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24163 95.452 NaN 596150 35 0 53644 0.261 + -1 IVLSMGEMVM 10 89 579.2666936960082 1156.5188344588164 2 579.2671508789062 MULTI HCD FTMS 0 0 0 24154 144348.890625 0.24181322046675252 -10 0.24167633056640625 9 3 Oxidation (M) _IVLSM(Oxidation (M))GEM(Oxidation (M))VM(Oxidation (M))_ REV__ENSG00000150893|ENST00000280481|FREM2;REV__FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 10.073929032068715 0.4168838835836452 1 [YT]NH 4 -1 36.995 0 0 3.1988 0 0 0 638.2777193658811 638.2777193658811 21.80400924012389 0 0 0 0 0.3807196863200844 2 0 0 [YT]NH 3.1988 - 282 + NaN NaN 190638.1 NaN 19815 4346 24154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24165 95.457 NaN 417090 35 0 72353 0.327 -1 VHSIQQCDDSS 11 54 638.2666965736914 1274.5188402141828 2 638.266357421875 MULTI HCD FTMS 0 0 0 24164 144646.484375 0.5758785882868166 -1 0.03260040283203125 1 Carbamidomethyl (C) _VHSIQQC(Carbamidomethyl (C))DDSS_ ENST00000400155.5_1_18:3534547-3567490:-|nuORF 2.498486711656943 0.4079631525365919 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3569456449985 0 939.3569456449985 0 22.703037561203843 0 0 0 0 0 0 0 VMS 1.8193 - 10 NaN NaN 157270.2 NaN 19816 4347 24164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24166 95.461 NaN 206780 35 0 11842 0.261 + 30553 VNFEFPEFQL 10 66 635.311197668403 1268.607842403606 2 635.8128051757812 MULTI HCD FTMS 0 0 0 24164 79132.796875 0.123021645401047 9 -0.1542205810546875 2 Unmodified _VNFEFPEFQL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000484240.1_1_17:44798950-44799232:-|nuORF 35.61225514009592 0.18348312004207498 1 [EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L} 10 5 + 46.075 0 0 3.6319 3.6319 80.33 0 0 0 0.5930863733867398 26.382353118286233 0.5930863733867398 1.7609125905568135 0 0.805462187404089 0 0.2614393726401688 0 [EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]P{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}M{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}K{I|L};[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}M{M(Oxidation (M))|F}[WR]{M(Oxidation (M))|F}K{I|L};[{M(Oxidation (M))|F}E]P{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E][WR]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}K{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[QT]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[QT]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}K{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))R][RD]{M(Oxidation (M))|F}Q{I|L} 3.6319;3.4931;3.3183;2.9095;2.8346;2.7707;2.5257;2.5133;2.5133;2.2212 -;-;-;-;-;-;-;-;-;- 666 NaN NaN 122554.6 NaN 19817 4347 24164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24167 95.465 NaN 230460 35 0 18540 0.261 + 14088 KYWPLFVLF 9 44 606.8447917263426 1211.675030519485 2 606.8450317382812 MULTI HCD FTMS 0 0 0 24164 96536.9921875 0.2948768411166548 3 -0.063446044921875 3 Unmodified _KYWPLFVLF_ ENSG00000104660|ENST00000321250|LEPROTL1;LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;nc|ENSG00000104660|O95214-2|LEPROTL1 19.361941925380144 0.1930734562688509 1 {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 4 5 39.68 0 0 3.2748 0 0 687.3736439435562 0 687.3736439435562 0 30.728050365394424 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 3.2748 + + 17 NaN NaN 120609.3 NaN 19818 4347 24164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24168 95.468 NaN 254140 35 0 28548 0.261 + 1300 AYNDNWFITF 10 52 645.7924385314823 1289.5703241297645 2 645.7931518554688 MULTI HCD FTMS 0 0 0 24164 53394.14453125 0.005156484056049402 47 -0.9136581420898438 4 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 37.07464296494664 0.1707926854601146 1 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 50.305 0 0 3.9009 0 0 577.2132435529312 0 577.2132435529312 0 33.85151878060192 0 0 0 1.9247425010840047 0 0 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 3.9009 + + 70 NaN NaN 131382.4 NaN 19819 4347 24164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24169 95.471 NaN 162260 35 0 17642 0.263 + 4446 EYGSIIAFF 9 48 523.7628966625159 NaN 0 523.7635498046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EYGSIIAFF_ ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214 63.562846038646086 0.01869078338221978 1 {M(Oxidation (M))|F}A{I|L}D 4 8 45.533 0 0 4.3551 0 0 165.07766786419273 431.2061861627563 596.283854026949 0 0 0 0 0 2 0 1.4386218330464624 0 {M(Oxidation (M))|F}A{I|L}D 4.3551 - 29 + NaN NaN 116899.8 NaN 19820 4347 24164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24170 95.475 NaN 122810 35 0 14258 0.261 -1 RYLKKKNMRT 10 60 451.9328308105469 NaN 0 451.9328308105469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _RYLKKKNM(Oxidation (M))RT_ ENSG00000242485|ENST00000344843|MRPL20;ENST00000487659.1_1_1:1342042-1342597:-|nuORF;nc|ENSG00000242485|Q9BYC9-2|MRPL20 1.5922808571145555 0.3388215173004697 1 Y 1 -1 6.9897 0 0 0.77504 0 0 598.7297636043371 137.0355623834594 735.7653259877965 0 0 0 0 0 0 0 0 0 Y 0.77504 + + 19 + NaN NaN 113046 NaN 19821 4347 24164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24172 95.48 NaN 35947000 35 0 11286000 0.327 + 978 AYFNFPELL 9 75 557.2843863626786 1112.554219792157 2 557.2850341796875 MULTI HCD FTMS 0 0 0 24171 35907728 0.4692677235246209 -6 0.1600494384765625 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 214.13773924641143 3.284580410505023E-19 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 112.67 0 0 10.127 10.127 95.581 0 0 0 20.21575216895016 79.35439267480197 20.21575216895016 12.500452295863553 0 2.610924374808178 1.3979400086720375 0.5941876774005248 1.9802046884880937 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}NPE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AY{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}A{M(Oxidation (M))|F}YPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{M(Oxidation (M))|F}APE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}NP[RK]A 10.127;9.0031;7.5192;7.338;7.2669;6.6983;6.688;6.4053;6.1623;5.5747 +;-;-;-;-;-;-;-;-;- + 1380 NaN NaN 846086.8 NaN 19822 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24173 95.484 NaN 6164400 35 0 835540 0.195 + 5859 FPDFPTPGVVF 11 69 611.8110689456707 1221.6075849581414 2 611.8110961914062 MULTI HCD FTMS 0 0 0 24171 6011596.5 0.971492097572343 -3 0.0914154052734375 2 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 85.64151623876279 0.004313738359844179 1 {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 8 3 55.761 0 0 4.5646 0 0 359.14778334785314 0 359.14778334785314 0 38.823193322791745 0 0 0 2.256872151062397 0 1.2302046884880937 0 + {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 4.5646 + + 223 NaN NaN 620447.8 NaN 19823 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24174 95.486 NaN 1654000 35 0 123850 0.261 + 12283 KLPALFFLF 9 106 548.3340729671017 1094.6535930010034 2 548.334228515625 MULTI HCD FTMS 0 0 0 24171 935026.75 0.7729794373718045 4 -0.0758514404296875 3 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 77.98433622928108 0.006504613272346738 1 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 65.104 0 0 5.9474 5.9474 86.081 0 0 0 2.144804705553952 2.144804705553952 2.144804705553952 6.883957647232265 0 2.7302046884880937 0 0 0 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[PA]{I|L}K{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PA]{I|L}K{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[K{I|L}][WY]{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 5.9474;5.3186;4.5227;4.0898;2.3872 +;-;-;-;- + 2973 + NaN NaN 349586.4 NaN 19824 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24175 95.49 NaN 542800 35 0 130200 0.261 -1 YSCQSKEIL 9 56 564.2738946479889 1126.5332363627776 2 564.2738647460938 MULTI HCD FTMS 0 0 0 24171 426022.21875 0.6835729324050223 -3 0.0914154052734375 4 Carbamidomethyl (C) _YSC(Carbamidomethyl (C))QSKEIL_ ENSG00000174944|ENST00000309170|P2RY14 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 7 -1 68.602 0 0 6.0896 0 0 248.07917983222814 0 248.07917983222814 0 48.90887598185621 0 0 0 2.079689690656103 0 0 1.1307196863200843 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 6.0896 - 167 NaN NaN 169790.3 NaN 19825 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24176 95.493 NaN 894250 35 0 79301 0.261 + 7767 FYNPFQFEI 9 77 602.7873747336658 1203.5601965341316 2 603.2890625 MULTI HCD FTMS 0 0 0 24171 195726.59375 0.2997505991182335 -3 0.0914154052734375 5 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 78.7280429016045 0.006263961847259105 1 N{I|L}MQ{M(Oxidation (M))|F}E{I|L} 7 4 63.92 0 0 5.3109 0 0 310.1314869611344 0 310.1314869611344 0 40.543132534128574 0 0 0 1.774227503252014 0 0 0.6237125054200234 N{I|L}MQ{M(Oxidation (M))|F}E{I|L} 5.3109 - 725 NaN NaN 239329.7 NaN 19826 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24177 95.496 NaN 197340 35 0 62730 0.261 + 22206 QLPVVVFTF 9 48 525.3051639449474 1048.5957749566946 2 525.3046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QLPVVVFTF_ ENSG00000204351|ENST00000375394|SKIC2 9.38312468134398 0.279288223203164 1 Q{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4 5 33.928 0 0 3.2356 0 0 507.3549061505875 0 507.3549061505875 0 29.323806533759438 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.2356 - 13 NaN NaN 120217.9 NaN 19827 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24178 95.5 NaN 165070 35 0 25503 0.261 + 10097 IFGVIIDTF 9 58 512.7896728515625 NaN 0 512.7896728515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 36.04419817259434 0.09096180745216527 1 C{I|L}{I|L} 3 7 13.188 0 0 1.2897 0 0 277.16918144355617 413.22004114322505 690.3892225867812 0 0 0 0 0 0 0 0 0 C{I|L}{I|L} 1.2897 - 36 + NaN NaN 110638.9 NaN 19828 4348 24171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24180 95.504 NaN 808990 35 0 94286 0.327 + 29666 VARRWRRRQGG 11 98 466.60798292993655 1396.8021193900097 3 466.6082763671875 MULTI HCD FTMS 0 0 0 24179 609677.375 0.6354076932702271 -5 0.142486572265625 1 Unmodified _VARRWRRRQGG_ REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF 1.214830529360525 0.41359283248740725 1 N{[QN]|[E{I|L}]|[KN]}KQ 5 -1 11.655 0 0 0.83444 0 0 238.1441458489915 543.3028048150999 781.4469506640914 0 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 N{[QN]|[E{I|L}]|[KN]}KQ 0.83444 - 72 + NaN NaN 209751.9 NaN 19829 4349 24179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24181 95.509 NaN 525090 35 0 63943 0.261 + 3601 EKLFEKWPY 9 57 620.3242665468714 1238.6339801605427 2 620.3241577148438 MULTI HCD FTMS 0 0 0 24179 391376.46875 0.4658288449184081 -5 0.142486572265625 2 Unmodified _EKLFEKWPY_ REV__ENSG00000165632|ENST00000344293|TAF3 3.5964929083625545 0.32375295897743744 1 V 1 -1 6.9897 0 0 0.56431 0 0 182.1059804406339 954.4360789363906 1136.5420593770245 0 0 0 0 0 0 0 0 0 V 0.56431 - 36 + NaN NaN 162967.4 NaN 19830 4349 24179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24182 95.512 NaN 1189900 35 0 107530 0.261 + 26063 SPFEFGFTF 9 94 539.7478762153153 1077.4811994974305 2 539.7479248046875 MULTI HCD FTMS 0 0 0 24179 475575 0.29865400816192217 -5 0.142486572265625 3 Unmodified _SPFEFGFTF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 164.5152109175784 6.8106583686994766E-09 1 [PS]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 92.604 0 0 8.5945 8.5945 94.452 0 0 0 13.979400086720375 13.010299956639813 13.010299956639813 13.979400086720375 0 2.3516784832448856 1.2218487496163564 1.6056270500406937 0 + + [PS]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PE{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][PS]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[DP]G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G[DP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[WE]TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}[DP]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}{M(Oxidation (M))|F}EPS;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PS 8.5945;7.297;5.6712;5.3918;4.9976;4.2811;3.9086;3.8611;3.7877;3.7718 +;-;-;-;-;-;-;-;-;- + 1842 NaN NaN 268952.1 NaN 19831 4349 24179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24183 95.516 NaN 506300 35 0 88650 0.261 + 34615 YPPKEFIL 8 70 503.78415134164004 1005.5537497500801 2 503.7835693359375 MULTI HCD FTMS 0 0 0 24179 123527.2109375 0.39397344932790596 -5 0.142486572265625 4 Unmodified _YPPKEFIL_ ENSG00000011347|ENST00000539008|SYT7;nc|ENSG00000011347|O43581-4|SYT7;nc|ENSG00000011347|O43581-5|SYT7;nc|ENSG00000011347|O43581-6|SYT7 14.838274106304384 0.4846187982323419 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 5 30.56 0 0 3.0391 0 0 614.311327049025 0 614.311327049025 0 13.085456211725202 0 0 0 0.6747425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0391 + + 51 NaN NaN 185536.4 NaN 19832 4349 24179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24185 95.52 NaN 343180 35 0 78957 0.327 + -1 SELQCGPELL 10 59 573.2792531496804 1144.5439533661606 2 573.7805786132812 MULTI HCD FTMS 0 0 0 24184 73055.7890625 0.38000163360446293 1 -0.0093841552734375 1 Carbamidomethyl (C) _SELQC(Carbamidomethyl (C))GPELL_ REV__ENSG00000023191|ENST00000354420|RNH1;REV__ENST00000525522.5_1_11:494693-499199:-|nuORF;REV__ENST00000525701.5_1_11:494693-500690:-|nuORF 21.536976647645854 0.3096624038397699 1 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 5 -1 31.95 0 0 2.7915 0 0 527.2017689435562 0 527.2017689435562 0 26.46591250700361 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 2.7915 - 44 NaN NaN 141943 NaN 19833 4350 24184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24186 95.525 NaN 249030 35 0 50572 0.261 + 22063 QGYGSVVFF 9 69 502.2496475515007 1002.4847421698014 2 502.24859619140625 MULTI HCD FTMS 0 0 0 24184 91253.9375 0.4344526627339983 4 -0.0637054443359375 2 Unmodified _QGYGSVVFF_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|214|2|anti-sense 25.399314129420986 0.14091189997036632 1 {[QG]|[NA]}AA[YT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 6 + 69.675 0 0 6.9503 6.9503 92.402 0 0 0 12.302046884880937 12.302046884880937 12.302046884880937 17.503406882387225 0 2.6549471895720984 1.154901959985743 0 0.3494850021680094 {[QG]|[NA]}AA[YT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};QQA[YT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[QG]|[NA]}AA[YT][HQ]K;QQA[YT][HQ]K 6.9503;5.2043;4.1319;2.3859 -;-;-;- 160 NaN NaN 136134 NaN 19834 4350 24184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24188 95.53 NaN 1472300 35 0 267350 0.327 + 18741 NAAAIFDLF 9 86 491.25562485881875 980.4966967844375 2 491.2555847167969 MULTI HCD FTMS 0 0 0 24187 728034.5 0.9835051177330201 -3 0.050140380859375 1 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 118.89474601620944 0.0014903111061077812 1 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8 3 + 76.705 0 0 7.823 7.823 86.89 0 0 0 1.3033376849500655 11.728976151137644 1.3033376849500655 1.3033376849500655 0 2.5114393726401687 0 0.23965182871044374 1.309894379144197 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QP]KD{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[TP]KD{I|L}{M(Oxidation (M))|F};QQA[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}KD{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AA[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQ[KS]{M(Oxidation (M))|F};[EP]{I|L}A{M(Oxidation (M))|F}YNK;[EP]{I|L}AY{M(Oxidation (M))|F}NK 7.823;7.6901;5.305;4.2851;4.0836;4.0373;3.9506;3.1713;3.1394;3.0599 -;+;-;-;-;-;-;-;-;- + 2674 NaN NaN 318653.4 NaN 19835 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24189 95.534 NaN 470920 35 0 46039 0.261 + 17089 LYLEDFFVM 9 63 596.7836439809146 1191.552735028629 2 596.7833251953125 MULTI HCD FTMS 0 0 0 24187 140483.046875 0.48172910826496584 3 -0.0543212890625 2 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 81.61307344734483 0.005330412723537057 1 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 72.7 0 0 6.1013 6.1013 93.501 0 0 0 2.243012119929091 68.72031878693626 2.243012119929091 72.69971887365664 0 2.555462187404089 0 0.7302046884880937 0 + + [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.1013 + + 108 NaN NaN 161602.8 NaN 19836 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24190 95.537 NaN 480410 35 0 109060 0.261 + -1 SELQCGPELL 10 68 573.2792531496804 1144.5439533661606 2 573.2788696289062 MULTI HCD FTMS 0 0 0 24187 455399 1 0 0 3 Carbamidomethyl (C) _SELQC(Carbamidomethyl (C))GPELL_ REV__ENSG00000023191|ENST00000354420|RNH1;REV__ENST00000525522.5_1_11:494693-499199:-|nuORF;REV__ENST00000525701.5_1_11:494693-500690:-|nuORF 27.628801355627647 0.2527626205058048 1 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 5 -1 33.64 0 0 2.9392 0 0 527.2020242139874 0 527.2020242139874 0 21.192803136799157 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 2.9392 - 202 NaN NaN 163731.5 NaN 19837 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24191 95.541 NaN 478250 35 0 49939 0.261 + -1 MLMCFVPPF 9 94 550.7520324371003 NaN 0 550.7393188476562 PEAK HCD FTMS 0 0 0 24187 37376.61328125 0.6209832931682391 2 -0.03835296630859375 4 Oxidation (M) _M(Oxidation (M))LMCFVPPF_ REV__ENST00000485527.5_1_2:75185926-75187326:+|nuORF 14.581692164780916 0.22376707489839515 1 P{M(Oxidation (M))|F}[HC]SY{I|L} 7 -1 24.856 0 0 2.2607 0 0 87.0594691996675 162.05584131412346 249.11531051379097 0 0 0 0 0 0 0 0.6139829889124311 0 P{M(Oxidation (M))|F}[HC]SY{I|L} 2.2607 - 822 + NaN NaN 162731 NaN 19838 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24192 95.544 NaN 140010 35 0 24933 0.261 + 10098 IFGVIIDTF 9 46 512.7897203664763 NaN 0 512.7891845703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 70.71552829651908 0.006026623598700661 1 {I|L}{I|L}DT 4 5 33.532 0 0 3.276 0 0 416.24472483449114 162.0561922662719 578.3009171007631 0 0 0 0 0 1.9247425010840047 0 0.6861818737241735 0 + {I|L}{I|L}DT 3.276 + + 35 + NaN NaN 111481.8 NaN 19839 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24193 95.547 NaN 351890 35 0 63387 0.261 + 32930 YAHHLLLV 8 61 483.2820739746094 NaN 0 483.2820739746094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YAHHLLLV_ ENSG00000159263|ENST00000290399|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;nc|ENSG00000159263|Q14190-2|SIM2 6.354104778181461 0.38822285293237185 1 {I|L}S 2 7 20.969 0 0 2.1762 0 0 131.0942404551974 629.3298567825472 760.4240972377445 0 0 0 0 0 1 0 0 0 {I|L}S 2.1762 - 26 + NaN NaN 133069.9 NaN 19840 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24194 95.551 NaN 165160 35 0 16063 0.261 -1 PLEGCRSS 8 40 453.20959250377206 NaN 0 453.20977783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _PLEGC(Carbamidomethyl (C))RSS_ ENST00000458426.5_2_2:208489125-208489869:-|nuORF 9.347437153973935 0.38822285293237185 1 E 1 -1 6.5938 0 0 0.72908 0 0 565.2254461386004 207.11348901920158 772.338935157802 0 0 0 0 0 0 0 0.5 0 E 0.72908 + + 6 + NaN NaN 114434.1 NaN 19841 4351 24187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24196 95.555 NaN 409940 35 0 44370 0.326 -1 SPFYQCAEV 9 83 550.7392789507259 1099.4640049682516 2 550.7396850585938 MULTI HCD FTMS 0 0 0 24195 126629.9296875 0.6841673098776524 1 -0.01264190673828125 1 Carbamidomethyl (C) _SPFYQC(Carbamidomethyl (C))AEV_ ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;nc|ENSG00000171634|Q12830|BPTF 22.736283301280096 0.1639198954644489 1 SP{M(Oxidation (M))|F}[HC]SY{I|L} 8 -1 56.477 0 0 5.1368 0 0 0 162.05605493717033 162.05605493717033 28.23600120316285 0 0 0 0 0.3494850021680094 1.154901959985743 0.6307196863200843 0 SP{M(Oxidation (M))|F}[HC]SY{I|L} 5.1368 - 664 + NaN NaN 145608.2 NaN 19842 4352 24195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24197 95.56 NaN 244460 35 0 28562 0.261 + 7644 FYIPSTILL 9 58 533.8129657934076 1065.611378653615 2 533.8131103515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FYIPSTILL_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 44.40701690623563 0.04511410083598184 1 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 6 5 36.203 0 0 3.3974 0 0 310.1312871044389 0 310.1312871044389 0 0.528871982441359 0 0 0 1.3807196863200843 0 0 0 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 3.3974 - 41 NaN NaN 122864.8 NaN 19843 4352 24195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24198 95.563 NaN 377210 35 0 75281 0.262 + 6848 FPTEEFCPPPP 11 63 420.8583664775622 1259.5532700328865 3 420.85821533203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FPTEEFCPPPP_ ENSG00000203668|ENST00000366553|CHML 10.315234532428624 0.3672054350828177 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[WP]P[{M(Oxidation (M))|F}E]PE 10 8 + 39.442 0 0 3.1314 3.1314 88.414 0 0 0 3.442124970647029 21.699784405891762 3.442124970647029 39.4420594384119 0 0.5 1.6989700043360187 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[WP]P[{M(Oxidation (M))|F}E]PE 3.1314 - 79 NaN NaN 140782 NaN 19844 4352 24195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24200 95.568 NaN 5046800 35 0 499240 0.327 -1 0 117 568.2756516861751 1134.5367504391502 2 568.2757568359375 MULTI HCD FTMS 0 0 0 24199 5636331.5 0.6089746630226855 -1 0.01264190673828125 1 NaN NaN 1 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE 7 -1 75.733 0 0 6.6752 0 0 0 204.08619104556877 204.08619104556877 14.772189618388836 0 0 0 0 1.6747425010840047 2 0.5242275032520141 0.3054621874040891 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE 6.6752 - 6666 + NaN NaN 856130.6 NaN 19845 4353 24199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24201 95.572 NaN 4330200 35 0 1569300 0.261 -1 0 69 583.7400846686755 1165.465616404151 2 583.7402954101562 MULTI HCD FTMS 0 0 0 24199 1935553.75 0.5604039226027093 -1 0.01264190673828125 2 NaN NaN 1 S{I|L}{I|L} 3 -1 21.044 0 0 1.8057 0 0 834.27055556465 0 834.27055556465 0 -0.15363119771798495 -0.15363119771798495 0 0 0.3252574989159953 0 0 0 S{I|L}{I|L} 1.8057 - 134 NaN NaN 737255.1 NaN 19846 4353 24199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24202 95.576 NaN 1145900 35 0 286330 0.261 + 928 AYDPEDDTIL 10 79 576.2579937864651 1150.5014346397302 2 576.2576293945312 MULTI HCD FTMS 0 0 0 24199 627437.1875 0.5474777834833631 -3 0.04773712158203125 3 Unmodified _AYDPEDDTIL_ DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant 25.399314129420986 0.2735354021946395 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}N{M(Oxidation (M))|F}C{I|L} 9 7 + 52.585 0 0 4.5706 4.5706 82.6 0 0 0 1.667724800373449 34.6657624451305 1.667724800373449 4.203103093438969 0 0.4247425010840047 2 0 0.8494850021680094 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}N{M(Oxidation (M))|F}C{I|L};AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}HHC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}C{I|L};AY{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}HHC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WH][DP]{M(Oxidation (M))|F}C{I|L} 4.5706;4.2053;3.0319;2.9704;1.8333 -;-;-;-;- 162 NaN NaN 254464 NaN 19847 4353 24199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24203 95.579 NaN 976420 35 0 97927 0.261 -1 0 87 622.8020327154419 1243.5895124976837 2 622.8019409179688 MULTI HCD FTMS 0 0 0 24199 636748.6875 0.4530569265333861 5 -0.0942230224609375 4 NaN NaN 1 PTP{M(Oxidation (M))|F}DPE 7 -1 75.187 0 0 6.0459 0 0 442.2194081037125 0 442.2194081037125 0 45.036895854961315 0 0 0 1.9604093769761874 0 1.0501648626366045 0 PTP{M(Oxidation (M))|F}DPE 6.0459 - 1174 NaN NaN 237503.2 NaN 19848 4353 24199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24205 95.584 NaN 761760 35 0 62482 0.327 + -1 LLVMMDSAVM 10 88 579.2666936960082 1156.5188344588164 2 579.2671508789062 MULTI HCD FTMS 0 0 0 24204 512504.46875 0.8585473400969522 -2 0.0286102294921875 1 3 Oxidation (M) _LLVM(Oxidation (M))M(Oxidation (M))DSAVM(Oxidation (M))_ REV__ENSG00000121064|ENST00000262288|SCPEP1;REV__ENST00000570589.5_1_17:55065091-55074421:+|nuORF;REV__ENST00000571345.5_1_17:55055520-55072276:+|nuORF;REV__ENST00000571898.5_1_17:55055520-55072831:+|nuORF;REV__nc|ENSG00000121064|Q9HB40-2|SCPEP1 25.399314129420986 0.2735354021946395 1 [YT]NH 4 -1 36.995 0 0 3.1988 0 0 0 638.2771700494749 638.2771700494749 20.55462187404089 0 0 0 0 0.3807196863200844 2 0 0 [YT]NH 3.1988 - 443 + NaN NaN 195186.7 NaN 19849 4354 24204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24206 95.588 NaN 153550 35 0 15941 0.464 + 4010 ERPRLPIKFV 10 60 627.8853249678615 NaN 0 627.8853149414062 PEAK HCD FTMS 0 0 0 24204 316234.46875 1 0 0 2 Unmodified _ERPRLPIKFV_ REV__ENSG00000101773|ENST00000327155|RBBP8;REV__nc|ENSG00000101773|Q99708-2|RBBP8;REV__nc|ENSG00000101773|Q99708-3|RBBP8 3.5964929083625545 0.337106189561315 1 D 1 -1 3.9794 0 0 0.3174 0 0 61.05025491109274 1074.6293077453072 1135.6795626563999 0 0 0 0 0 0 0 0 0 D 0.3174 - 20 + NaN NaN 112353.6 NaN 19850 4354 24204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24207 95.595 NaN 311400 35 0 29346 0.262 -1 VLVSDMILI 9 65 530.8015125861392 1059.5884722390783 2 530.8015747070312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VLVSDM(Oxidation (M))ILI_ ENST00000489450.1_1_1:76254988-76255843:+|nuORF 16.942295170755138 0.21397866736869717 1 PV{I|L}{I|L}{I|L} 5 -1 38.047 0 0 3.5908 0 0 506.21678359199376 0 506.21678359199376 0 24.30778022353465 0 0 0 1 0 0 0 PV{I|L}{I|L}{I|L} 3.5908 - 201 NaN NaN 133038.6 NaN 19851 4354 24204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24210 95.611 NaN 43450000 35 0 13469000 0.326 + 979 AYFNFPELL 9 86 557.2843863626786 1112.554219792157 2 557.2853393554688 MULTI HCD FTMS 0 0 0 24209 45369888 0.5929259589558832 2 -0.05118560791015625 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 197.16714112316518 2.0801358606533006E-17 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 113.34 0 0 10.188 10.188 97.783 0 0 0 21.796058402355456 76.21060219063025 21.796058402355456 29.010234424404686 0 2.642159058960253 1.3979400086720375 0.6307196863200843 1.9802046884880937 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AY{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}A{M(Oxidation (M))|F}YPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{M(Oxidation (M))|F}APE{I|L}{I|L};[TP][HK][{M(Oxidation (M))|F}E]E{I|L}{I|L} 10.188;7.5801;7.3989;7.3278;6.4202;6.0989;0.58863 +;-;-;-;-;-;- + 1479 NaN NaN 865952 NaN 19852 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24211 95.615 NaN 4610700 35 0 631700 0.24 + 5860 FPDFPTPGVVF 11 76 611.8110689456707 1221.6075849581414 2 611.8110961914062 MULTI HCD FTMS 0 0 0 24209 4464902.5 0.7215416894964588 5 -0.132843017578125 2 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 103.35351024395868 0.021349619833249373 1 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 11 2 + 80.693 0 0 6.6055 6.6055 94.396 0 0 0 5.862435673934286 64.49533589390239 5.862435673934286 70.58214843793185 0 2.441962823435958 0 1.7302046884880937 0 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F};[DP][K{I|L}]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F};[DP][K{I|L}]P{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6055;0.82769;0.80575 -;-;- 553 NaN NaN 680260.8 NaN 19853 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24212 95.618 NaN 680320 35 0 41653 0.261 + 12284 KLPALFFLF 9 87 548.3340729671017 1094.6535930010034 2 548.334228515625 MULTI HCD FTMS 0 0 0 24209 530592.4375 0.4386366954875723 12 -0.28961181640625 3 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 67.34385681178166 0.00994769994983633 1 [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 54.618 0 0 4.9895 4.9895 91.237 0 0 0 0.307802886139541 32.80847674951612 0.307802886139541 54.61812184018221 0 2.555462187404089 0 0 0.2742275032520141 + + [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.9895 + + 1025 NaN NaN 186451.9 NaN 19854 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24213 95.621 NaN 258060 35 0 25154 0.263 + 32983 YARHNRSPDM 10 51 416.1953373421939 1245.5641826267818 3 416.1953125 MULTI HCD FTMS 0 0 0 24209 56442.34765625 0.5327486162372168 1 -0.03839874267578125 4 Unmodified _YARHNRSPDM_ REV__ENSG00000091428|ENST00000397081|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 3.5870582119611467 0.4563168352879256 1 V{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9641 0 0 981.4173453238506 0 981.4173453238506 0 5.880456295278407 0 0 0 0.3494850021680094 0 0 0 V{M(Oxidation (M))|F} 1.9641 - 9 + NaN NaN 128342.6 NaN 19855 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24214 95.625 NaN 238470 35 0 52205 0.261 -1 VYADIPFLLM 10 52 599.3149303722349 1196.6153078112698 2 599.3152465820312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _VYADIPFLLM(Oxidation (M))_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 3.944395688203298 0.4544253912184634 1 [Y{I|L}]{I|L}W 4 -1 8.6721 0 0 0.72472 0 0 0 618.2841059892572 618.2841059892572 -2.9318250140072166 0 -2.9318250140072166 0 0 0 0 0 0 [Y{I|L}]{I|L}W 0.72472 - 108 NaN NaN 137296.8 NaN 19856 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24215 95.628 NaN 146190 35 0 14804 0.264 + 25463 SFCDFESQGLF 11 57 427.18233653829145 NaN 0 426.8494873046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SFCDFESQGLF_ REV__ENSG00000179862|ENST00000372638|CITED4 5.296884461304476 0.3270944076746277 1 A 1 -1 3.9794 0 0 0.46687 0 0 646.2445578648658 132.04514490299064 778.2897027678564 0 0 0 0 0 0 0 0 0 A 0.46687 - 6 + NaN NaN 102003 NaN 19857 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24216 95.631 NaN 164940 35 0 30342 0.261 + 1097 AYILDTLVF 9 54 527.7944406283228 NaN 0 527.79443359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 39.957323273324995 0.07841223356700552 1 V{I|L}TD 4 7 43.175 0 0 4.098 0 0 165.07811881386118 457.2470797174438 622.325198531305 0 0 0 0 0 1.8494850021680094 0 0.4247425010840047 0 V{I|L}TD 4.098 - 68 + NaN NaN 107137.1 NaN 19858 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24217 95.635 NaN 80403 35 0 11400 0.261 -1 FQQTSYMV 8 43 510.22889031386234 NaN 0 510.2292175292969 PEAK HCD FTMS 0 0 0 24209 41408.9296875 0.6244187538279988 1 -0.03839874267578125 8 Oxidation (M) _FQQTSYM(Oxidation (M))V_ ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2 2.302733041254933 0.38822285293237185 1 W 1 -1 1.5938 0 0 0.15649 0 0 411.10840211034343 418.2296541803344 829.3380562906779 0 0 0 0 0 0 0 0 0 W 0.15649 - 1 + NaN NaN 109238.6 NaN 19859 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24218 95.638 NaN 98136 35 0 7328 0.261 + 9440 HPVLHVCLK 9 49 523.3037174453942 NaN 0 523.3033447265625 PEAK HCD FTMS 0 0 0 24209 141103.140625 1 0 0 9 Unmodified _HPVLHVCLK_ ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 4.75600775471527 0.27219989241163056 1 {M(Oxidation (M))|F}H 2 8 7.4743 0 0 0.71552 0 0 540.3600461195009 217.10798059635002 757.4680267158509 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}H 0.71552 - 4 + NaN NaN 115723.6 NaN 19860 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24219 95.641 NaN 314050 35 0 25212 0.261 + 17090 LYLEDFFVM 9 60 596.7836439809146 1191.552735028629 2 596.7850341796875 MULTI HCD FTMS 0 0 0 24209 177781.078125 0.6096274400123447 8 -0.19815826416015625 10 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 61.357469665136826 0.01568246967499496 1 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 62.335 0 0 5.2314 5.2314 91.833 0 0 0 9.459406196379447 44.26402864747103 9.459406196379447 62.33464698110282 0 2.504432191740108 0 0 0 + + [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2314 + + 150 NaN NaN 152087.8 NaN 19861 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24220 95.645 NaN 90930 35 0 12471 0.262 + 22227 QMKKLIKQKQW 11 48 486.9590992296975 1457.8554682892925 3 486.95904541015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _QMKKLIKQKQW_ ENSG00000145331|ENST00000394876|TRMT10A;ENST00000507394.1_1_4:100479199-100480495:-|nuORF 0.09484139111097674 0.41850472438158626 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 3 9 13.072 0 0 0.89666 0 0 0 1081.6704151489207 1081.6704151489207 6.082268588648249 0 0 0 0 0 0 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 0.89666 - 19 NaN NaN 91072.2 NaN 19862 4356 24209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24222 95.65 NaN 828530 35 0 117340 0.326 + 7768 FYNPFQFEI 9 66 602.7873747336658 1203.5601965341316 2 602.786865234375 MULTI HCD FTMS 0 0 0 24221 512946 0.48812984478834415 3 -0.05499267578125 1 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 114.20165948288297 0.0022564706844261533 1 [Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L} 9 0 + 77.902 0 0 6.4726 6.4726 88.779 0 0 0 5.6424927368725974 62.95355572555421 5.6424927368725974 9.208187539523749 0 2.4247425010840047 0 0 1.0501648626366045 + + [Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}E;[{M(Oxidation (M))|F}T]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L};{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L}E 6.4726;5.7076;5.652;5.3912;4.8869;4.5706;4.2253;4.0736;3.6749;3.4928 +;-;-;-;-;-;-;-;-;- + 726 NaN NaN 208704.2 NaN 19863 4357 24221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24223 95.654 NaN 340880 35 0 72620 0.261 -1 TMFTNQGTVI 10 42 564.2738946479889 1126.5332363627776 2 564.2740478515625 MULTI HCD FTMS 0 0 0 24221 199037.828125 0.3193656711852733 6 -0.146881103515625 2 Oxidation (M) _TM(Oxidation (M))FTNQGTVI_ ENST00000418852.2_1_9:74722934-74723045:-|nuORF 12.240655878213236 0.39661705172222156 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 7 -1 50.991 0 0 4.5264 0 0 248.07930190254064 0 248.07930190254064 0 36.28607912182254 0 0 0 1.7302046884880937 0 0 0.8494850021680094 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 4.5264 - 61 NaN NaN 142144.8 NaN 19864 4357 24221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24224 95.658 NaN 392790 35 0 60949 0.261 -1 SRCYSSNEVSS 11 48 638.2666965736914 1274.5188402141828 2 638.7688598632812 MULTI HCD FTMS 0 0 0 24221 105081.890625 0.3505574680451604 8 -0.19586944580078125 3 Carbamidomethyl (C) _SRC(Carbamidomethyl (C))YSSNEVSS_ sp|P0DKA0|VE8E2_HPV16ProteinE8^E2COS=Humanpapillomavirustype16OX=333760PE=1SV=1 4.189502756095605 0.4005469306127019 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3584326573464 0 939.3584326573464 0 19.20818753952375 0 0 0 0 0 0 0 VMS 1.8193 - 11 NaN NaN 148979.7 NaN 19865 4357 24221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24226 95.662 NaN 1185600 35 0 125300 0.327 + 26064 SPFEFGFTF 9 94 539.7478762153153 1077.4811994974305 2 539.7481689453125 MULTI HCD FTMS 0 0 0 24225 453161.34375 0.2845785662723653 4 -0.10456085205078125 1 Unmodified _SPFEFGFTF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 180.00974506902125 1.0762292318080308E-12 1 [PS]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 93.271 0 0 8.6564 8.6564 96.23 0 0 0 15.60178180108052 58.48111424532154 15.60178180108052 27.556584229283843 0 2.4392404878284264 1.3010299956639813 1.6025684359364407 0 + + [PS]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[DP]G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G[DP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[WE]TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}[DP]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}{M(Oxidation (M))|F}EPS;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PS 8.6564;6.0989;5.8456;4.8595;4.3942;4.0826;4.0776;3.8354;3.6823;3.5757 +;-;-;-;-;-;-;-;-;- + 2364 NaN NaN 258559.3 NaN 19866 4358 24225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24227 95.667 NaN 390520 35 0 49773 0.261 -1 VMICLRVCVF 10 59 620.3242665468714 1238.6339801605427 2 620.3240356445312 MULTI HCD FTMS 0 0 0 24225 264408.53125 0.3147075272362304 4 -0.10456085205078125 2 Carbamidomethyl (C) _VMICLRVC(Carbamidomethyl (C))VF_ ENST00000471841.5_1_3:179109981-179110074:+|nuORF 3.944395688203298 0.4544253912184634 1 C(Carbamidomethyl (C))[{M(Oxidation (M))|F}V] 3 -1 8.072 0 0 0.65168 0 0 814.4608367052678 0 814.4608367052678 0 1.0822685886482493 0 0 0 0 0 0 0 C(Carbamidomethyl (C))[{M(Oxidation (M))|F}V] 0.65168 + + 18 + NaN NaN 142235.8 NaN 19867 4358 24225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24228 95.67 NaN 784530 35 0 145170 0.263 + 18742 NAAAIFDLF 9 77 491.25562485881875 980.4966967844375 2 491.2554626464844 MULTI HCD FTMS 0 0 0 24225 113245.1640625 0.15298340726158477 4 -0.10456085205078125 3 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 88.95385435242217 0.004553379958619559 1 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8 3 + 68.916 0 0 7.0287 7.0287 94.252 0 0 0 9.67945412406904 9.67945412406904 9.67945412406904 39.456524089320894 0 2.399649864804614 0 0.2742275032520141 0.9604093769761877 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[VG]{[VA]|[{I|L}G]}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQ[KS]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}SK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]NK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QP]SK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQAYK;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]{M(Oxidation (M))|F}DNK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}P[AG][KS]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}P[AG]{M(Oxidation (M))|F}SK 7.0287;3.0045;1.9286;1.6724;1.24;1.1386;1.0928;1.0873;0.98396;0.72774 -;-;-;-;-;-;-;-;-;- 1178 NaN NaN 205748.5 NaN 19868 4358 24225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24229 95.674 NaN 519660 35 0 97240 0.261 + 34616 YPPKEFIL 8 69 503.78415134164004 1005.5537497500801 2 503.78436279296875 MULTI HCD FTMS 0 0 0 24225 90463.9609375 0.28852265391505105 4 -0.10456085205078125 4 Unmodified _YPPKEFIL_ ENSG00000011347|ENST00000539008|SYT7;nc|ENSG00000011347|O43581-4|SYT7;nc|ENSG00000011347|O43581-5|SYT7;nc|ENSG00000011347|O43581-6|SYT7 14.838274106304384 0.4846187982323419 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 5 33.258 0 0 3.3074 0 0 614.3101673810562 0 614.3101673810562 0 14.674165578762484 0 0 0 0.7059771852360797 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.3074 + + 81 NaN NaN 160236.7 NaN 19869 4358 24225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24230 95.677 NaN 285580 35 0 41433 0.261 + 13480 KYPENFFLL 9 46 585.8129036690639 1169.6112544049276 2 585.8126831054688 MULTI HCD FTMS 0 0 0 24225 36923.18359375 0.20832657449372619 2 -0.042205810546875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 16.911 0 0 1.4459 0 0 778.3589955060562 0 778.3589955060562 0 8.839256468719158 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 1.4459 + + 38 NaN NaN 130105.5 NaN 19870 4358 24225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24231 95.68 NaN 107990 35 0 7821.3 0.261 + -1 EHDFGIKMKM 10 41 634.2940673828125 NaN 0 634.2940673828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _EHDFGIKM(Oxidation (M))KM(Oxidation (M))_ REV__tr|U7SRN2|U7SRN2_FUSNUUPF0371proteinHMPREF1766_01593OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01593PE=3SV=1 3.2813086475875832 0.33737594360511275 1 D 1 -1 6.2814 0 0 0.49594 0 0 687.2095246076186 461.31012903385005 1148.5196536414687 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.49594 + + 3 + NaN NaN 98674.2 NaN 19871 4358 24225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24233 95.685 NaN 786600 35 0 112850 0.327 -1 0 96 466.60798292993655 1396.8021193900097 3 466.60791015625 MULTI HCD FTMS 0 0 0 24232 324818.65625 0.33852703341492263 5 -0.12425994873046875 1 NaN NaN 1 Q 1 -1 8.9794 0 0 0.64285 0 0 722.4320765206722 543.3010958307249 1265.7331723513971 0 0 0 0 0 0.5 0 0 0 Q 0.64285 - 48 + NaN NaN 205284.2 NaN 19872 4359 24232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24234 95.689 NaN 253890 35 0 20599 0.261 -1 LYLEDFFVM 9 53 596.7836439809146 1191.552735028629 2 596.7832641601562 MULTI HCD FTMS 0 0 0 24232 118217.8515625 0.40537973428833507 11 -0.24813079833984375 2 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 37.97399986684836 0.07464525285885698 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 -1 53.443 0 0 4.4852 0 0 518.272752830275 0 518.272752830275 0 46.36500636031869 0 0 0 1.8494850021680094 0 0 0 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.4852 + + 86 NaN NaN 142906.5 NaN 19873 4359 24232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24235 95.693 NaN 656090 35 0 116570 0.261 -1 VATVFTLCF 9 56 529.271614819018 1056.528676704836 2 529.2717895507812 MULTI HCD FTMS 0 0 0 24232 39223.86328125 0.746649660541765 1 -0.01949310302734375 3 Carbamidomethyl (C) _VATVFTLC(Carbamidomethyl (C))F_ ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3 21.74664581756881 0.17247014374749275 1 VV[PG]TP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 48.682 0 0 4.6078 0 0 0 209.05718408756096 209.05718408756096 24.552593986562812 0 0 0 0 1.7302046884880937 0 0.8807196863200843 0 VV[PG]TP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.6078 - 199 + NaN NaN 194637.1 NaN 19874 4359 24232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24236 95.696 NaN 470200 35 0 48845 0.261 + -1 ELTGHMEISI 10 76 573.2792531496804 1144.5439533661606 2 573.2794189453125 MULTI HCD FTMS 0 0 0 24232 30038.845703125 0.06596159785841646 8 -0.19947052001953125 4 Oxidation (M) _ELTGHM(Oxidation (M))EISI_ REV__ENSG00000072110|ENST00000394419|ACTN1;REV__nc|ENSG00000072110|P12814-2|ACTN1;REV__nc|ENSG00000072110|P12814-4|ACTN1;REV__nc|ENSG00000072110|P12814|ACTN1 17.11289562659939 0.35104376501799556 1 E{I|L}AV{I|L}{I|L}DE{I|L} 9 -1 29.037 0 0 2.537 0 0 131.0019045137488 0 131.0019045137488 0 5.190322953457525 0 0 0 0.23020468848809378 0 1.0114393726401687 0 E{I|L}AV{I|L}{I|L}DE{I|L} 2.537 - 497 + NaN NaN 155623.3 NaN 19875 4359 24232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24237 95.7 NaN 242740 35 0 26303 0.264 + -1 MVCNRIYQF 9 61 416.1953373421939 1245.5641826267818 3 416.195556640625 MULTI HCD FTMS 0 0 0 24232 46372.03125 0.4376968093355144 4 -0.11138153076171875 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VC(Carbamidomethyl (C))NRIYQF_ REV__ENSG00000051382|ENST00000674063|PIK3CB 2.498486711656943 0.33207666356665205 1 V{M(Oxidation (M))|F} 2 -1 24.024 0 0 1.9287 0 0 981.4162161734599 0 981.4162161734599 0 6.064921830680703 0 0 0 0.3054621874040891 0 0 0 V{M(Oxidation (M))|F} 1.9287 - 7 + NaN NaN 131858.1 NaN 19876 4359 24232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24239 95.705 NaN 2071600 35 0 178750 0.327 -1 0 108 568.2756516861751 1134.5367504391502 2 568.275634765625 MULTI HCD FTMS 0 0 0 24238 805631.4375 0.08704405217685374 6 -0.157135009765625 1 NaN NaN 1 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P 6 -1 69.659 0 0 6.1398 0 0 0 392.1802922707245 392.1802922707245 6.176033705237806 0 0 0 0 1.9604093769761874 2 0 0.3054621874040891 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P 6.1398 - 4035 + NaN NaN 410388.5 NaN 19877 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24240 95.709 NaN 1170100 35 0 435790 0.261 -1 0 56 583.7400846686755 1165.465616404151 2 583.740234375 MULTI HCD FTMS 0 0 0 24238 223027.828125 0.06457359798497606 6 -0.157135009765625 2 NaN NaN 1 {I|L}{I|L} 2 -1 13.443 0 0 1.1535 0 0 921.2955915838163 0 921.2955915838163 0 2.4742501084004687 0 0 0 0 0 0 0 {I|L}{I|L} 1.1535 - 11 NaN NaN 254301.5 NaN 19878 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24241 95.713 NaN 1005500 35 0 101100 0.261 -1 PFAIHRQHM 9 78 576.7887495803271 NaN 0 576.8079223632812 PEAK HCD FTMS 0 0 0 24238 8099.2763671875 0.4379910372385848 1 -0.03945159912109375 3 Oxidation (M) _PFAIHRQHM(Oxidation (M))_ ENSG00000089693|ENST00000203630|MLF2;ENST00000536249.1_1_12:6861069-6861237:-|nuORF;ENST00000541346.1_1_12:6859683-6861527:-|nuORF 8.593279151180031 0.2536050107310812 1 {M(Oxidation (M))|F}{I|L}NS[PA]{I|L} 7 -1 18.76 0 0 1.6291 0 0 165.04014790697812 241.09812341861564 406.1382713255938 0 0 0 0 0 0 0 0 0.3054621874040891 {M(Oxidation (M))|F}{I|L}NS[PA]{I|L} 1.6291 - 117 + NaN NaN 247143 NaN 19879 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24242 95.716 NaN 328820 35 0 69236 0.261 + 7645 FYIPSTILL 9 41 533.8129657934076 1065.611378653615 2 533.8131103515625 MULTI HCD FTMS 0 0 0 24238 177629.65625 0.6070770253108385 5 -0.14087677001953125 4 Unmodified _FYIPSTILL_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 50.855029805455786 0.030374663808198754 1 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 6 5 42.664 0 0 4.0037 0 0 310.1314616809705 0 310.1314616809705 0 3.8515187806019213 0 0 0 1.4247425010840047 0 0 0 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 4.0037 - 55 NaN NaN 148678.2 NaN 19880 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24243 95.719 NaN 381540 35 0 37167 0.261 + 7019 FPYPSLADIAL 11 55 603.8240126806769 1205.6334724281537 2 603.8244018554688 MULTI HCD FTMS 0 0 0 24238 64010.0234375 0.24720161626196757 6 -0.157135009765625 5 Unmodified _FPYPSLADIAL_ nc|ENSG00000290292|Q8IX15-3|HOMEZ;nc|ENSG00000290292|Q8IX15|HOMEZ 16.149105407346934 0.31637472687818013 1 Q{I|L}A{I|L} 4 8 36.542 0 0 3.031 0 0 762.3757191388687 0 762.3757191388687 0 10.748715810909175 0 0 0 0.5 0 0 0.3494850021680094 Q{I|L}A{I|L} 3.031 - 150 NaN NaN 159955.7 NaN 19881 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24244 95.723 NaN 299990 35 0 30819 0.261 + 34534 YPIAVLIDEL 10 65 573.326194628548 1144.637836323896 2 573.3262939453125 MULTI HCD FTMS 0 0 0 24238 26686.791015625 0.05657762978352055 -13 0.24761199951171875 6 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 61.357469665136826 0.03648492562855298 1 AV{I|L}{I|L}DE{I|L} 7 3 49.149 0 0 4.2939 0 0 373.19883925605626 0 373.19883925605626 0 34.077220027124966 0 0 0 1.7614393726401687 0 0 0 + AV{I|L}{I|L}DE{I|L} 4.2939 + + 299 NaN NaN 132142.4 NaN 19882 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24245 95.726 NaN 155850 35 0 21806 0.261 -1 QGMPEVYNF 9 52 550.7392789507259 1099.4640049682516 2 550.7389526367188 MULTI HCD FTMS 0 0 0 24238 38941.08203125 0.2103942993792504 9 -0.21575164794921875 7 Oxidation (M) _QGM(Oxidation (M))PEVYNF_ ENSG00000121316|ENST00000240617|PLBD1 10.823927491677226 0.26684000660059787 1 S{[CA]|SS}E[HM]Y{I|L}{M(Oxidation (M))|F} 9 -1 + 36.092 0 0 3.2827 3.2827 81.242 0 0 0 9.09302084115162 4.761832342372426 4.761832342372426 4.331232596199207 0 0 0 0.5 0 S{[CA]|SS}E[HM]Y{I|L}{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}E{[DA]|[EG]}[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q[HM]Y{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[AG][HM]Y{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QQQ[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[TP]W[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F} 3.2827;2.8888;2.4197;1.1225;0.89994;0.88875 -;-;-;-;-;- 193 + NaN NaN 110606.8 NaN 19883 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24246 95.729 NaN 162500 35 0 24797 0.261 + 29479 TYVGIGWLI 9 44 511.28926328438797 1020.563973635576 2 511.28997802734375 MULTI HCD FTMS 0 0 0 24238 28377.16015625 0.21077119557358476 -1 0.01949310302734375 8 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 48.345845343767074 0.03388484103555672 1 [YT]VG{I|L}GW{I|L}{I|L} 9 0 + 50.582 0 0 4.9563 4.9563 88.798 0 0 0 5.5893153899759795 38.26274388132951 5.5893153899759795 16.720449851406514 0 1.5682503180159344 0 0.3807196863200844 0 + + [YT]VG{I|L}GW{I|L}{I|L};[YT]V{[QV]|[N{I|L}]|[RA]|[KV]}W{I|L}{I|L};[YT]V[{I|L}V][WQ]{I|L} 4.9563;3.3179;0.99073 +;-;- + 150 NaN NaN 105579.5 NaN 19884 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24247 95.733 NaN 80076 35 0 17780 0.261 + 7733 FYLVGYTLL 9 26 544.804177905684 1087.593802878168 2 544.8046875 MULTI HCD FTMS 0 0 0 24238 17722.68359375 0.24718114770764218 1 -0.03945159912109375 9 Unmodified _FYLVGYTLL_ ENSG00000111684|ENST00000261407|LPCAT3;LPCAT3|p.Q363Sfs*87|1|0.1|ENSG00000111684|chr12:6977700-6977701|-/G|frameshift_variant;nc|ENSG00000111684|Q6P1A2-2|LPCAT3 21.74664581756881 0.17247014374749275 1 [Y{M(Oxidation (M))|F}]{I|L} 3 6 20.458 0 0 1.881 0 0 0 661.3555881167023 661.3555881167023 0.9936247538460918 0 0 0 0 1 0 0 0 + [Y{M(Oxidation (M))|F}]{I|L} 1.881 + + 9 NaN NaN 108867.3 NaN 19885 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24248 95.736 NaN 137870 35 0 18710 0.262 + 30753 VPLPKALL 8 40 425.7900415201263 NaN 0 425.84674072265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VPLPKALL_ TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant 0 0.38822285293237185 1 Y 1 8 2.4743 0 0 0.29124 0 0 567.4288856752152 116.05040918521718 683.4792948604323 0 0 0 0 0 0 0 0 0 Y 0.29124 - 4 + NaN NaN 105067.4 NaN 19886 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24249 95.739 NaN 50135 35 0 4910.4 0.261 + 22210 QLRHCPLQL 9 37 554.3086756182436 NaN 0 554.3086547851562 PEAK HCD FTMS 0 0 0 24238 6993.330078125 0.05169932760271093 6 -0.157135009765625 11 Unmodified _QLRHCPLQL_ REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF 10.073929032068715 0.24642998803896465 1 Q{I|L} 2 -1 15.969 0 0 1.4431 0 0 131.08621002379329 731.3389376275999 862.4251476513932 0 0 0 0 0 0.5 0 0 0 Q{I|L} 1.4431 + + 6 + NaN NaN 90101.8 NaN 19887 4360 24238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24251 95.744 NaN 496300 35 0 52207 0.327 -1 0 67 622.8020327154419 1243.5895124976837 2 622.8018798828125 MULTI HCD FTMS 0 0 0 24250 371833.78125 0.264565712378343 13 -0.240631103515625 1 NaN NaN 1 P{M(Oxidation (M))|F}DPE 5 -1 59.112 0 0 4.7534 0 0 640.3192005841812 0 640.3192005841812 0 34.190840781556204 0 0 0 1.5356668758921828 0 0.7302046884880937 0 P{M(Oxidation (M))|F}DPE 4.7534 - 294 NaN NaN 161964.3 NaN 19888 4361 24250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24252 95.749 NaN 310350 35 0 39121 0.263 + 3994 ERKRKMIIPIM 11 72 472.2838411813653 1413.829694144296 3 472.28369140625 MULTI HCD FTMS 0 0 0 24250 106164.8046875 0.21755709853319288 7 -0.156768798828125 2 Unmodified _ERKRKMIIPIM_ REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF 1.4551175022131473 0.41253901545122046 1 [EP]{I|L} 3 -1 24.181 0 0 1.7103 0 0 0 1071.6276732304866 1071.6276732304866 14.71726222832956 0 0 0 0 0 1.5228787452803376 0 0 [EP]{I|L} 1.7103 - 32 NaN NaN 132543 NaN 19889 4361 24250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24253 95.752 NaN 178000 35 0 16429 0.261 + -1 LLVMMDSAVM 10 51 579.2666936960082 1156.5188344588164 2 579.2669067382812 MULTI HCD FTMS 0 0 0 24250 70988.15625 0.11891933913371235 5 -0.11768341064453125 3 3 Oxidation (M) _LLVM(Oxidation (M))M(Oxidation (M))DSAVM(Oxidation (M))_ REV__ENSG00000121064|ENST00000262288|SCPEP1;REV__ENST00000570589.5_1_17:55065091-55074421:+|nuORF;REV__ENST00000571345.5_1_17:55055520-55072276:+|nuORF;REV__ENST00000571898.5_1_17:55055520-55072831:+|nuORF;REV__nc|ENSG00000121064|Q9HB40-2|SCPEP1 6.723162845929126 0.4397169348982109 1 [YT]N 3 -1 34.265 0 0 2.9628 0 0 0 775.3411802384053 775.3411802384053 15.764837301042718 0 0 0 0 0.3807196863200844 2 0 0 [YT]N 2.9628 - 10 + NaN NaN 112652.5 NaN 19890 4361 24250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24254 95.755 NaN 114780 35 0 17342 0.261 + 35809 YYPFSYLF 8 49 550.2608782035148 1098.5072034738296 2 550.2608032226562 MULTI HCD FTMS 0 0 0 24250 44325.72265625 0.19384748248376568 7 -0.156768798828125 4 Unmodified _YYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 32.116972079565 0.3321965280364247 1 N[DP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F} 9 3 + 47.087 0 0 4.2865 4.2865 83.358 0 0 0 42.48319373273603 2.8867301246356902 2.8867301246356902 6.974987195809419 0 1.274227503252014 0 0.3252574989159953 0 N[DP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F};N{M(Oxidation (M))|F}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[RE]|[WV]}{M(Oxidation (M))|F} 4.2865;3.6515 -;- 65 + NaN NaN 99466.1 NaN 19891 4361 24250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24255 95.759 NaN 347850 35 0 29223 0.261 + 26148 SPMDIFDMF 9 69 559.7301072714724 1117.4456616097448 2 559.729736328125 MULTI HCD FTMS 0 0 0 24250 76837.3828125 0.14462452444645213 -12 0.23956298828125 5 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 61.357469665136826 0.01568246967499496 1 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 60.503 0 0 5.4144 0 0 430.15159804511876 0 430.15159804511876 0 50.09704696843414 0 0 0 2.1747425010840047 0 0.3807196863200844 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4144 + + 533 NaN NaN 157312.1 NaN 19892 4361 24250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24256 95.762 NaN 149540 35 0 16062 0.261 -1 VLVSDMILI 9 56 530.801624422353 1059.588695911506 2 531.3035278320312 MULTI HCD FTMS 0 0 0 24250 18406.8203125 0.05199919681827744 -16 0.3557891845703125 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VLVSDM(Oxidation (M))ILI_ ENST00000489450.1_1_1:76254988-76255843:+|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}{I|L}{I|L} 3 -1 34.693 0 0 3.2742 0 0 702.3267268945691 0 702.3267268945691 0 27.703037561203843 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L}{I|L} 3.2742 + + 27 NaN NaN 114897.8 NaN 19893 4361 24250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24258 95.767 NaN 5899600 35 0 1840700 0.327 + 980 AYFNFPELL 9 70 557.2843863626786 1112.554219792157 2 557.28515625 MULTI HCD FTMS 0 0 0 24257 3245809.75 0.04241854991149869 8 -0.16628265380859375 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 152.41221235671458 6.276234901293889E-06 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 108.49 0 0 9.7517 9.7517 97.389 0 0 0 23.75853508964032 90.43309437926122 23.75853508964032 27.892339346049127 0 2.610924374808178 1.5228787452803376 0.28872548999643577 1.8684151806525389 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GGE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}Y{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}[R{I|L}]{M(Oxidation (M))|F}C{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YAE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L} 9.7517;7.2446;7.0052;6.5892;6.1008;5.2221;4.2897;3.5828;3.201;2.9383 +;-;-;-;-;-;-;-;-;- + 880 NaN NaN 494760.9 NaN 19894 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24259 95.771 NaN 2467200 35 0 329590 0.261 + 5861 FPDFPTPGVVF 11 69 611.8110689456707 1221.6075849581414 2 611.8112182617188 MULTI HCD FTMS 0 0 0 24257 2040493.625 0.32974991449180663 11 -0.20807647705078125 2 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 96.11092074494114 0.015204628282084255 1 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 11 2 + 67.77 0 0 5.5476 5.5476 92.243 0 0 0 7.367585652254178 53.357643521911285 7.367585652254178 57.6590188516184 0 2.524711128196314 0 1.2302046884880937 0 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F};[DP][K{I|L}]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F} 5.5476;0.82769 -;- 316 NaN NaN 469622.1 NaN 19895 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24260 95.775 NaN 69119 35 0 10343 0.261 + -1 GLLYKIGTF 9 37 527.3027752878918 1052.5909976425835 2 527.3027954101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GLLYKIGTF_ REV__ENST00000562985.5_1_16:71901919-71918510:-|nuORF;REV__ENST00000563827.5_1_16:71901919-71917343:-|nuORF;REV__ENST00000565601.5_2_16:71901919-71917197:-|nuORF;REV__ENST00000568322.5_1_16:71901919-71918589:-|nuORF;REV__ENST00000568961.5_1_16:71901919-71917908:-|nuORF 10.073929032068715 0.27331982688540024 1 T{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.3538 0 0 786.4643324587929 0 786.4643324587929 0 10.96401568399578 0 0 0 0.3807196863200844 0 0 0 T{M(Oxidation (M))|F} 2.3538 + + 13 + NaN NaN 95425.2 NaN 19896 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24261 95.778 NaN 202460 35 0 25090 0.261 + 21125 PPEWVPII 8 34 475.77111187667714 949.5276708201543 2 475.7708435058594 MULTI HCD FTMS 0 0 0 24257 55473.57421875 0.7014033465291061 1 -0.02953338623046875 4 Unmodified _PPEWVPII_ ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 13.50788311687929 0.4944073034352369 1 {I|L}{I|L} 2 6 20.969 0 0 2.2084 0 0 705.3512440412125 0 705.3512440412125 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}{I|L} 2.2084 + + 7 NaN NaN 115707.2 NaN 19897 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24262 95.782 NaN 237160 35 0 63247 0.261 + 4129 ETIAFYPILM 10 49 599.3149303722349 1196.6153078112698 2 599.3153076171875 MULTI HCD FTMS 0 0 0 24257 70124.1328125 0.6419073723930504 2 -0.04241180419921875 5 Unmodified _ETIAFYPILM_ tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1 7.289230182591677 0.43672065049472153 1 [Y{I|L}]VPY[WP]N 8 7 16.159 0 0 1.3504 0 0 0 161.08549759081976 161.08549759081976 8.199849938126892 0 0 0 0 0.9247425010840047 0 0 0 [Y{I|L}]VPY[WP]N 1.3504 - 187 NaN NaN 119780.9 NaN 19898 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24263 95.785 NaN 175530 35 0 12544 0.261 + 12285 KLPALFFLF 9 47 548.3340729671017 1094.6535930010034 2 548.3341674804688 MULTI HCD FTMS 0 0 0 24257 85230.3359375 0.0704592645290401 18 -0.31487274169921875 6 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 50.855029805455786 0.030374663808198754 1 [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 51.137 0 0 4.6715 4.6715 89.48 0 0 0 42.18433447093204 4.466584062177432 4.466584062177432 28.015384402724592 0 2.305462187404089 0 0 0 + + [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[K{I|L}][WY]{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 4.6715;2.1122 +;- + 113 + NaN NaN 113723.4 NaN 19899 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24264 95.788 NaN 112020 35 0 21555 0.261 + 11428 IYPVLQALDF 10 40 589.8266597732369 1177.6387666132737 2 589.8275756835938 MULTI HCD FTMS 0 0 0 24257 41959.07421875 0.5808677084535416 5 -0.11762237548828125 7 Unmodified _IYPVLQALDF_ ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 8.155526934196011 0.43213520406898465 1 D{M(Oxidation (M))|F} 2 8 24.464 0 0 2.0774 0 0 897.5298329084 0 897.5298329084 0 18.979400086720375 0 0 0 0.5 0 0 0 + D{M(Oxidation (M))|F} 2.0774 + + 7 NaN NaN 103786 NaN 19900 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24265 95.792 NaN 189920 35 0 27481 0.264 + -1 MVCNRIYQF 9 56 416.1953373421939 1245.5641826267818 3 416.1955261230469 MULTI HCD FTMS 0 0 0 24257 7846.439453125 0.07406105405997523 7 -0.1533966064453125 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VC(Carbamidomethyl (C))NRIYQF_ REV__ENSG00000051382|ENST00000674063|PIK3CB 2.498486711656943 0.33207666356665205 1 V{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.8432 0 0 981.4168875601787 0 981.4168875601787 0 3.4948500216800937 0 0 0 0.3494850021680094 0 0 0 V{M(Oxidation (M))|F} 1.8432 - 7 + NaN NaN 124778.9 NaN 19901 4362 24257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24267 95.797 NaN 229110 35 0 25770 0.327 + 7769 FYNPFQFEI 9 50 602.7873747336658 1203.5601965341316 2 602.787841796875 MULTI HCD FTMS 0 0 0 24266 106321.109375 0.10117732981043485 9 -0.159027099609375 1 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 51.629811660486645 0.02929079705179888 1 [Y{M(Oxidation (M))|F}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{M(Oxidation (M))|F}E{I|L} 9 0 + 49.186 0 0 4.0867 4.0867 80.573 0 0 0 3.65279269351241 32.98840924329106 3.65279269351241 1.2763625255165323 0 1.7302046884880937 0 0 0 + + [Y{M(Oxidation (M))|F}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]GG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]GG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[NV]|[RG]}{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}E 4.0867;3.9807;3.3217;3.3217;3.2156;3.2156;1.7133;1.6072 +;-;-;-;-;-;-;- + 166 NaN NaN 115725.1 NaN 19902 4363 24266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24268 95.801 NaN 242230 35 0 38276 0.261 -1 0 47 638.2666965736914 1274.5188402141828 2 638.2667236328125 MULTI HCD FTMS 0 0 0 24266 103324.3125 0.4113633281535183 15 -0.2396392822265625 2 NaN NaN 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3564687476297 0 939.3564687476297 0 23.187587626244124 0 0 0 0 0 0 0 VMS 1.8193 - 11 NaN NaN 116914 NaN 19903 4363 24266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24269 95.804 NaN 67886 35 0 8892.1 0.262 + 33505 YIDLAVLTF 9 42 527.7945709249452 NaN 0 527.7943725585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YIDLAVLTF_ ENST00000547020.1_1_12:53876285-53877059:-|nuORF 11.640296217721598 0.23883959125015683 1 T 1 8 10.797 0 0 1.0248 0 0 377.23201186766534 572.2725313775999 949.5045432452653 0 0 0 0 0 0.3807196863200844 0 0 0 + T 1.0248 + + 4 + NaN NaN 100625.7 NaN 19904 4363 24266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24271 95.809 NaN 217650 35 0 19240 0.327 -1 VMICLRVCVF 10 52 620.3242665468714 1238.6339801605427 2 620.3239135742188 MULTI HCD FTMS 0 0 0 24270 128482.5078125 0.15292400791920943 10 -0.17531585693359375 1 Carbamidomethyl (C) _VMICLRVC(Carbamidomethyl (C))VF_ ENST00000471841.5_1_3:179109981-179110074:+|nuORF 3.944395688203298 0.4544253912184634 1 C(Carbamidomethyl (C))[{M(Oxidation (M))|F}V] 3 -1 10.458 0 0 0.84428 0 0 814.4592965657392 0 814.4592965657392 0 3.4678748622465623 0 0 0 0 0 0 0 C(Carbamidomethyl (C))[{M(Oxidation (M))|F}V] 0.84428 + + 38 + NaN NaN 121952.8 NaN 19905 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24272 95.814 NaN 383000 35 0 21002 0.261 + 26065 SPFEFGFTF 9 68 539.7478762153153 1077.4811994974305 2 539.747802734375 MULTI HCD FTMS 0 0 0 24270 95776.7578125 0.06014637567041333 10 -0.17531585693359375 2 Unmodified _SPFEFGFTF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 61.357469665136826 0.01568246967499496 1 P{M(Oxidation (M))|F}E{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 7 3 35.455 0 0 3.2905 0 0 105.04184144621532 0 105.04184144621532 0 17.345916506418458 0 0 0 1 0 0.3807196863200844 0 P{M(Oxidation (M))|F}E{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 3.2905 - 222 + NaN NaN 137518.2 NaN 19906 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24273 95.817 NaN 152640 35 0 28172 0.261 + 32217 VYTLDIPLL 9 43 523.8104834583295 1045.6064139834589 2 523.8108520507812 MULTI HCD FTMS 0 0 0 24270 39914.859375 0.6016617261282021 1 -0.03610992431640625 3 Unmodified _VYTLDIPLL_ ENSG00000139209|ENST00000266579|SLC38A4 28.486842064014134 0.11819662193267319 1 {I|L}P{I|L}{I|L} 4 5 30.445 0 0 2.9117 0 0 591.2913027547464 0 591.2913027547464 0 30.445312593723983 0 0 0 1.4247425010840047 0 0 0 + {I|L}P{I|L}{I|L} 2.9117 + + 30 + NaN NaN 123730.4 NaN 19907 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24274 95.821 NaN 58760 35 0 11476 0.261 + 22485 QRPAVSRSLKL 11 33 627.8853249678615 NaN 0 627.8853759765625 PEAK HCD FTMS 0 0 0 24270 38290.90234375 0.12108389858671913 10 -0.17531585693359375 4 Unmodified _QRPAVSRSLKL_ ENST00000605573.1_1_3:187871604-187871808:-|nuORF 1.1933415558491238 0.338734977139133 1 M 1 11 5.4846 0 0 0.43745 0 0 663.4134589183417 456.27411829166255 1119.6875772100043 0 0 0 0 0 0 0 0 0 M 0.43745 - 3 + NaN NaN 92046.9 NaN 19908 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24275 95.824 NaN 172500 35 0 24048 0.261 + 20440 PALALLSDYVL 11 40 587.8394997194789 1173.6644465057577 2 587.839599609375 MULTI HCD FTMS 0 0 0 24270 56159.8046875 0.3711768825759078 -9 0.2092437744140625 5 Unmodified _PALALLSDYVL_ ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2 12.240655878213236 0.35042917576941135 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[WT]|[RM]}[W{I|L}]V{I|L} 9 6 + 38.362 0 0 3.2686 3.2686 88.452 0 0 0 10.939674434979032 10.915149811213503 10.915149811213503 38.36242476018044 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[WT]|[RM]}[W{I|L}]V{I|L} 3.2686 - 44 NaN NaN 105299.5 NaN 19909 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24276 95.827 NaN 292400 35 0 29826 0.261 + 29309 TYNIFAITF 9 51 545.2843338321163 1088.5541147310325 2 545.2847900390625 MULTI HCD FTMS 0 0 0 24270 77867.0703125 0.051097478283615945 -9 0.2092437744140625 6 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 76.82478488871298 0.006879825292024087 1 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 2 + 74.161 0 0 6.8128 6.8128 84.882 0 0 0 4.704999916446795 8.053396606206888 4.704999916446795 0.7255998297264199 0 2.305462187404089 0 1.0994850021680094 0.4247425010840047 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VS]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[QS]|[NT]}A{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[QS]|[NT]}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VS]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[HS][HA][HK] 6.8128;6.7461;6.3805;6.193;5.7113;5.1582;4.5173;4.1517;3.9642;0.032348 -;-;-;-;-;-;-;-;-;- 514 NaN NaN 130003.7 NaN 19910 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24277 95.831 NaN 79022 35 0 5116.4 0.261 + 15018 LLLSRESR 8 35 487.2935171007205 NaN 0 487.2935791015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LLLSRESR_ ENST00000397292.7_1_9:26947272-26947455:-|nuORF 3.944395688203298 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89114.7 NaN 19911 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24278 95.834 NaN 50618 35 0 5725 0.261 + -1 AAHPHLGE 8 32 437.21459380908556 NaN 0 437.2149353027344 PEAK HCD FTMS 0 0 0 24270 31335.91796875 0.44700646460238186 12 -0.20092010498046875 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AAHPHLGE_ REV__ENST00000327979.6_1_20:49225168-49225207:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84367.7 NaN 19912 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24279 95.837 NaN 107870 35 0 16265 0.261 + 18743 NAAAIFDLF 9 39 491.25562485881875 980.4966967844375 2 491.2558288574219 MULTI HCD FTMS 0 0 0 24270 25609.17578125 0.03459555205389839 10 -0.17531585693359375 9 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 13.90604991867851 0.24021115267848145 1 T{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 5 5 36.268 0 0 3.6989 0 0 339.17973525215 0 339.17973525215 0 30.783409326844264 0 0 0 1.3252574989159953 0 0 0.3807196863200844 T{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 3.6989 - 23 NaN NaN 104573.8 NaN 19913 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24280 95.841 NaN 44120 35 0 5135.8 0.261 + 16330 LRKSMIVPYRL 11 30 459.27994751998176 NaN 0 459.2798156738281 PEAK HCD FTMS 0 0 0 24270 8426.5244140625 0.1863363052087072 -26 0.5910263061523438 10 Unmodified _LRKSMIVPYRL_ REV__ENSG00000181693|ENST00000641600|OR8H1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84258.6 NaN 19914 4364 24270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24282 95.846 NaN 476700 35 0 75823 0.327 + 19929 NYFPGGVALIW 11 51 618.8242645778104 1235.6339762224206 2 618.8241577148438 MULTI HCD FTMS 0 0 0 24281 199533.328125 0.4336998676023528 -8 0.19586944580078125 1 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 92.4914307365334 0.011439422034398083 1 [YN]{M(Oxidation (M))|F}[NP]VA{I|L}{I|L}W 10 2 + 77.017 0 0 6.233 6.233 86.45 0 0 0 6.651051905782481 6.651051905782481 6.651051905782481 6.651051905782481 0 2.805462187404089 0 0 1.610924374808178 [YN]{M(Oxidation (M))|F}[NP]VA{I|L}{I|L}W;{M(Oxidation (M))|F}G{I|L}{I|L}AV[NP][YG]W;{M(Oxidation (M))|F}G[YG][NP]VA{I|L}{I|L}W;{M(Oxidation (M))|F}[YN][NP]VA{I|L}{I|L}W 6.233;5.6947;5.3681;4.8968 -;-;-;- 140 NaN NaN 166332.1 NaN 19915 4365 24281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24283 95.85 NaN 421920 35 0 53395 0.261 + 7790 FYPFPVPPL 9 60 538.7944414503859 1075.5743299675717 2 538.79443359375 MULTI HCD FTMS 0 0 0 24281 64617.45703125 0.6312906118295628 -3 0.078521728515625 2 Unmodified _FYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 45.7499826716795 0.03894913563566938 1 {I|L}{I|L}N 3 9 23.812 0 0 2.2139 0 0 717.3415394513687 0 717.3415394513687 0 4.547509540478028 0 0 0 0 0 0 0 {I|L}{I|L}N 2.2139 - 90 NaN NaN 151332.1 NaN 19916 4365 24281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24284 95.854 NaN 130910 35 0 11939 0.261 -1 LYLEDFFVM 9 43 596.7836439809146 1191.552735028629 2 596.7838745117188 MULTI HCD FTMS 0 0 0 24281 32100.39453125 0.11007516406055774 17 -0.2754364013671875 3 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 32.30548876998284 0.10066689432505688 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 -1 48.36 0 0 4.0586 0 0 518.2733631818375 0 518.2733631818375 0 44.38039076304328 0 0 0 1.8807196863200843 0 0 0 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.0586 + + 40 NaN NaN 119198 NaN 19917 4365 24281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24285 95.857 NaN 80713 35 0 8753.5 0.261 + 35810 YYPFSYLF 8 51 550.2608782035148 1098.5072034738296 2 550.738525390625 MULTI HCD FTMS 0 0 0 24281 20613.357421875 0.0935580776685548 10 -0.151885986328125 4 Unmodified _YYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 14.581692164780916 0.48650662947107914 1 {I|L}{M(Oxidation (M))|F} 2 6 30.217 0 0 2.7507 0 0 820.3434401857944 0 820.3434401857944 0 20.295000083553205 0 0 0 0.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.7507 + + 7 NaN NaN 96500 NaN 19918 4365 24281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24287 95.862 NaN 755880 35 0 111880 0.327 + 20672 PFLPASNLFF 10 67 576.8081963962168 1151.6018398592335 2 576.8081665039062 MULTI HCD FTMS 0 0 0 24286 297550.5625 0.6446498382522071 3 -0.05861663818359375 1 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 92.65332237495696 0.000798763162112469 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 92.484 0 0 8.0309 8.0309 93.955 0 0 0 24.25968732272281 86.99986893552975 24.25968732272281 16.15423952885945 0 2.610924374808178 1.6989700043360187 0 0.6989700043360187 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.0309;6.6282;5.8799;4.4772 +;-;-;- + 292 NaN NaN 213764.2 NaN 19919 4366 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24288 95.866 NaN 437430 35 0 64770 0.261 + 34535 YPIAVLIDEL 10 57 573.326194628548 1144.637836323896 2 573.3263549804688 MULTI HCD FTMS 0 0 0 24286 150909.796875 0.3199380027857604 -7 0.17662811279296875 2 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 78.14939416004806 0.007929027632678966 1 {I|L}{I|L}VA{I|L}E{I|L} 7 5 66.446 0 0 5.805 0 0 375.1637567785418 0 375.1637567785418 0 44.05024486769143 0 0 0 2.1989700043360187 0 0 0 {I|L}{I|L}VA{I|L}E{I|L} 5.805 - 118 NaN NaN 149183 NaN 19920 4366 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24289 95.87 NaN 112610 35 0 19042 0.261 + 7646 FYIPSTILL 9 41 533.8129657934076 1065.611378653615 2 533.8129272460938 MULTI HCD FTMS 0 0 0 24286 17065.796875 0.058325019707591776 11 -0.16146087646484375 3 Unmodified _FYIPSTILL_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 28.486842064014134 0.11819662193267319 1 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 6 5 36.911 0 0 3.4639 0 0 310.1315174787125 0 310.1315174787125 0 36.91122510072759 0 0 0 1 0 0 0 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 3.4639 - 13 NaN NaN 100517.6 NaN 19921 4366 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24290 95.873 NaN 177110 35 0 16782 0.261 + 14802 LIPEEFFQF 9 55 585.2976041420748 1168.5806553509494 2 585.8135375976562 MULTI HCD FTMS 0 0 0 24286 28160.97265625 0.5686126553149348 -2 0.0523681640625 4 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 15.248480904072842 0.22861284681709862 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 25.974 0 0 2.2227 0 0 728.3748617322327 0 728.3748617322327 0 14.291746928241123 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.2227 + + 84 NaN NaN 110075.2 NaN 19922 4366 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24291 95.876 NaN 49736 35 0 4029.4 0.261 + 5375 FGLYGADIYHI 11 37 634.8194041907282 1267.6242554482562 2 634.8186645507812 MULTI HCD FTMS 0 0 0 24286 6663.1044921875 0.21496928780176983 -4 0.09477996826171875 5 Unmodified _FGLYGADIYHI_ REV__ENSG00000115207|ENST00000264720|GTF3C2 5.296884461304476 0.39569033063702824 1 {I|L}W 2 -1 20.969 0 0 1.6542 0 0 950.4443226544937 0 950.4443226544937 0 12.28470012691339 0 0 0 0 0 0 0 {I|L}W 1.6542 - 17 NaN NaN 96200.3 NaN 19923 4366 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24292 95.88 NaN 45129 35 0 5874.5 0.261 -1 RCRGYLVRQ 9 21 604.32568359375 NaN 0 604.32568359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _RC(Carbamidomethyl (C))RGYLVRQ_ ENSG00000140575|ENST00000268182|IQGAP1 1.844237919475145 0.28630992268396543 1 Y 1 -1 6.9897 0 0 0.57927 0 0 514.3075756818374 526.2398775690061 1040.5474532508435 0 0 0 0 0 0 0 0 0 Y 0.57927 + + 2 + NaN NaN 104633 NaN 19924 4366 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24294 95.885 NaN 290420 35 0 30481 0.327 -1 0 53 622.8020327154419 1243.5895124976837 2 622.8019409179688 MULTI HCD FTMS 0 0 0 24293 170821.203125 0.12154203187823256 19 -0.34442138671875 1 NaN NaN 1 P{M(Oxidation (M))|F}DPE 5 -1 56.766 0 0 4.5647 0 0 640.3185902326187 0 640.3185902326187 0 30.568109453757657 0 0 0 1.805462187404089 0 0.4247425010840047 0 P{M(Oxidation (M))|F}DPE 4.5647 - 95 NaN NaN 127920.5 NaN 19925 4367 24293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24295 95.889 NaN 234610 35 0 76218 0.261 -1 SVNNCVCHFS 10 41 583.7400846686755 1165.465616404151 2 583.740478515625 MULTI HCD FTMS 0 0 0 24293 47060.69140625 0.013625556027290956 13 -0.1972503662109375 2 Carbamidomethyl (C) _SVNNCVC(Carbamidomethyl (C))HFS_ ENSG00000170515|ENST00000303305|PA2G4;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000550166.1_1_12:56500490-56500880:+|nuORF;nc|ENSG00000170515|Q9UQ80-2|PA2G4 1.1933415558491238 0.46898715808974617 1 [Y{I|L}]{I|L} 3 -1 10.458 0 0 0.89729 0 0 0 773.2117461251072 773.2117461251072 3.4678748622465623 0 0 0 0 0 0 0 0 [Y{I|L}]{I|L} 0.89729 - 9 NaN NaN 111453.3 NaN 19926 4367 24293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24296 95.893 NaN 164650 35 0 10506 0.262 + 20584 PEIRTSKL 8 53 472.2835321808475 NaN 0 472.2831726074219 PEAK HCD FTMS 0 0 0 24293 99447.578125 0.6257619063864998 -15 0.32904815673828125 3 Unmodified _PEIRTSKL_ ENSG00000078487|ENST00000684423|ZCWPW1;ENST00000490089.1_1_7:99998800-100014813:-|nuORF;nc|ENSG00000078487|Q9H0M4-2|ZCWPW1;nc|ENSG00000078487|Q9H0M4-3|ZCWPW1;nc|ENSG00000078487|Q9H0M4-4|ZCWPW1;nc|ENSG00000078487|Q9H0M4-5|ZCWPW1;nc|ENSG00000078487|Q9H0M4|ZCWPW1 5.230669730166228 0.38822285293237185 1 {I|L} 1 7 5.4846 0 0 0.58188 0 0 602.3696939009544 224.07610498599846 826.4457988869528 0 0 0 0 0 0 0 0 0 + {I|L} 0.58188 + + 6 + NaN NaN 109406 NaN 19927 4367 24293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24297 95.896 NaN 59039 35 0 18993 0.261 + -1 YYYVWIFCT 9 28 452.87021509781687 NaN 0 452.8698425292969 PEAK HCD FTMS 0 0 0 24293 21425.28125 0.6221013201558954 -11 0.27336883544921875 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))YYYVWIFC(Carbamidomethyl (C))T_ REV__ENST00000504592.5_2_4:102994878-102995350:+|nuORF 0.235843874597859 0.29410397576755687 1 N 1 -1 2.2185 0 0 0.24548 0 0 451.80310001809625 334.85236536197505 786.6554653800713 0 0 0 0 0 0 0 0 0 N 0.24548 - 2 + NaN NaN 94537.7 NaN 19928 4367 24293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24299 95.901 NaN 1667700 35 0 210670 0.327 + 5862 FPDFPTPGVVF 11 67 611.8110689456707 1221.6075849581414 2 611.81103515625 MULTI HCD FTMS 0 0 0 24298 1238558.25 0.20015474296354227 17 -0.30205535888671875 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 66.45667989310934 0.018758930405316187 1 {M(Oxidation (M))|F}PT[PG]VV{M(Oxidation (M))|F} 8 3 52.3 0 0 4.2812 0 0 359.1468983380875 0 359.1468983380875 0 37.6072158606037 0 0 0 2.0924778212679485 0 1.1989700043360187 0 + {M(Oxidation (M))|F}PT[PG]VV{M(Oxidation (M))|F} 4.2812 + + 86 NaN NaN 350627.1 NaN 19929 4368 24298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24300 95.905 NaN 2048000 35 0 609750 0.261 + 981 AYFNFPELL 9 84 557.2843863626786 1112.554219792157 2 557.2845458984375 MULTI HCD FTMS 0 0 0 24298 1089384.125 0.014236846407620418 14 -0.2200927734375 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 126.56589448801843 0.0008132384440316759 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 96.512 0 0 8.6748 8.6748 96.017 0 0 0 19.366130211356065 74.64001255353097 19.366130211356065 24.564856298445576 0 2.5114393726401687 1.5228787452803376 0 1.5356668758921828 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};[HQ]VV[{M(Oxidation (M))|F}E]E{I|L}{I|L} 8.6748;6.4668;0.24319 +;-;- + 838 NaN NaN 393594.7 NaN 19930 4368 24298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24301 95.909 NaN 786890 35 0 89819 0.261 + 26149 SPMDIFDMF 9 74 559.7301072714724 1117.4456616097448 2 559.7302856445312 MULTI HCD FTMS 0 0 0 24298 344302.4375 0.6480514362481795 -5 0.10433197021484375 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 133.70201269244603 0.0003804610509361063 1 [WE]D{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 3 [WE] + + 78.167 1.7339 0.55024 6.9951 6.9951 65.098 0 0 0 0 66.54561271747019 0 0 0 2.6549471895720984 0 1.285666875892183 0 [WE]D{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.9951 - 555 + NaN NaN 204053.5 NaN 19931 4368 24298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24302 95.912 NaN 599660 35 0 49145 0.261 + 1641 CARRPLHLL 9 78 539.8183815700964 1077.6222102069928 2 539.8184814453125 MULTI HCD FTMS 0 0 0 24298 130440.21875 0.6112648760230126 -5 0.10433197021484375 4 Unmodified _CARRPLHLL_ REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF 21.74664581756881 0.17247014374749275 1 V{I|L}{I|L}H{I|L}{I|L} 6 -1 49.959 0 0 4.636 0 0 371.14756972480626 0 371.14756972480626 0 25.73699398972998 0 0 0 2.1989700043360187 0 0 0 V{I|L}{I|L}H{I|L}{I|L} 4.636 - 433 NaN NaN 171069.5 NaN 19932 4368 24298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24303 95.915 NaN 467810 35 0 116790 0.261 + 28267 TLMEEVLLL 9 45 530.801624422353 1059.588695911506 2 530.8017578125 MULTI HCD FTMS 0 0 0 24298 148944.8125 0.2387363642447185 -15 0.33264923095703125 5 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 21.74664581756881 0.17247014374749275 1 V{I|L}{I|L}{I|L} 4 5 44.24 0 0 4.1752 0 0 603.25786025215 0 603.25786025215 0 25.97933570858663 0 0 0 1.3807196863200843 0 0 0 + V{I|L}{I|L}{I|L} 4.1752 + + 23 NaN NaN 157268.7 NaN 19933 4368 24298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24305 95.92 NaN 139830 35 0 21332 0.327 + 29480 TYVGIGWLI 9 46 511.28926328438797 1020.563973635576 2 511.2890930175781 MULTI HCD FTMS 0 0 0 24304 12675.73046875 0.09414891592238918 8 -0.10284423828125 1 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 42.09456458481378 0.05572955244001856 1 GW{I|L}{I|L} 4 5 39.909 0 0 3.9105 0 0 533.2849610854979 0 533.2849610854979 0 32.91956270212445 0 0 0 1.274227503252014 0 0 0 + GW{I|L}{I|L} 3.9105 + + 65 NaN NaN 98932.1 NaN 19934 4369 24304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24306 95.925 NaN 83373 35 0 5172.9 0.261 -1 MRQHLLIM 8 35 542.296040342073 NaN 0 542.2959594726562 PEAK HCD FTMS 0 0 0 24304 21192.060546875 0.6693827962951515 1 -0.01288604736328125 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MRQHLLIM_ ENST00000424317.5_3_2:197863717-197863765:-|nuORF 5.230669730166228 0.38822285293237185 1 DK 2 -1 12.959 0 0 1.197 0 0 132.10226278297495 704.342339082513 836.444601865488 0 0 0 0 0 0.5 0 0 0 DK 1.197 - 8 + NaN NaN 105231.1 NaN 19935 4369 24304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24307 95.928 NaN 70036 35 0 5554.9 0.261 + 10201 IGAPSFVSSTM 11 43 548.7702097341498 1095.5258665350996 2 548.8350830078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IGAPSFVSSTM_ REV__NR3C2|p.C205F|1|0.24|ENSG00000151623|chr4:148436247-148436247|C/A|missense_variant 8.155526934196011 0.3831532958467648 1 C{I|L} 2 -1 20.969 0 0 1.9141 0 0 861.4296131818375 0 861.4296131818375 0 14.938331324631378 0 0 0 0 0 0 0 C{I|L} 1.9141 - 19 NaN NaN 84480.7 NaN 19936 4369 24304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24309 95.933 NaN 122190 35 0 20254 0.327 -1 0 36 638.2666965736914 1274.5188402141828 2 638.2662963867188 MULTI HCD FTMS 0 0 0 24308 24643.16796875 0.09811142553570029 22 -0.40544891357421875 1 NaN NaN 1 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3585588684599 0 939.3585588684599 0 23.187587626244124 0 0 0 0 0 0 0 VMS 1.8193 - 6 NaN NaN 106210.9 NaN 19937 4370 24308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24310 95.938 NaN 123780 35 0 10371 0.261 + 7770 FYNPFQFEI 9 47 602.7873747336658 1203.5601965341316 2 602.787841796875 MULTI HCD FTMS 0 0 0 24308 34491.92578125 0.0328232179957591 16 -0.2957611083984375 2 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 24.990960013464015 0.14443998892849796 1 Q{M(Oxidation (M))|F}E{I|L} 4 5 43.488 0 0 3.6133 0 0 668.2958241193375 0 668.2958241193375 0 23.79493455131808 0 0 0 0.8807196863200843 0 0 0.4247425010840047 + Q{M(Oxidation (M))|F}E{I|L} 3.6133 + + 49 NaN NaN 108758.6 NaN 19938 4370 24308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24312 95.943 NaN 234130 35 0 43760 0.327 + 20441 PALALLSDYVL 11 55 587.8394997194789 1173.6644465057577 2 587.8397216796875 MULTI HCD FTMS 0 0 0 24311 30369.130859375 0.20071863464709652 -2 0.02248382568359375 1 Unmodified _PALALLSDYVL_ ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2 15.248480904072842 0.3242218977034194 1 S{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{I|L} 6 6 39.358 0 0 3.3535 0 0 465.29405651593913 0 465.29405651593913 0 11.910976904085814 0 0 0 0.7134679910804405 0 0.3807196863200844 0 S{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{I|L} 3.3535 - 45 NaN NaN 132214.1 NaN 19939 4371 24311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24313 95.947 NaN 161030 35 0 16686 0.261 + 7771 FYNPFQFEI 9 52 602.7873747336658 1203.5601965341316 2 602.787353515625 MULTI HCD FTMS 0 0 0 24311 34505.6171875 0.03283624701637287 17 -0.32843017578125 2 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 24.990960013464015 0.14443998892849796 1 Q{M(Oxidation (M))|F}E{I|L} 4 5 42.18 0 0 3.5046 0 0 668.2955799787125 0 668.2955799787125 0 27.231975075880328 0 0 0 0.8494850021680094 0 0 0.3252574989159953 + Q{M(Oxidation (M))|F}E{I|L} 3.5046 + + 91 NaN NaN 105801.1 NaN 19940 4371 24311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24314 95.951 NaN 80625 35 0 5633.9 0.262 + 25797 SLLVAQRVQ 9 44 507.3103583859414 NaN 0 507.22125244140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SLLVAQRVQ_ REV__ENST00000492226.1_1_3:183861886-183862561:+|nuORF 3.944395688203298 0.27613285122220627 1 VG 2 -1 9.464 0 0 0.93461 0 0 313.20938757090784 540.2819307916624 853.4913183625702 0 0 0 0 0 0 0 0 0 VG 0.93461 - 6 + NaN NaN 92871.6 NaN 19941 4371 24311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24316 95.956 NaN 1251900 35 0 142870 0.326 + 29310 TYNIFAITF 9 64 545.2843338321163 1088.5541147310325 2 545.2847290039062 MULTI HCD FTMS 0 0 0 24315 630955.375 0.4140418850048572 -1 0.0126800537109375 1 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 179.17365725063826 1.1335045685127237E-12 1 [YT]N{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 0 + 116.91 0 0 10.74 10.74 92.934 0 0 0 8.20107520596089 16.478174818886373 8.20107520596089 8.20107520596089 0 2.6747425010840047 1.3010299956639813 1.8411290632962718 1.4916440611282626 + + [YT]N{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}[YN]A{I|L}T{M(Oxidation (M))|F};[YT]GG{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[YT]{[VA]|[{I|L}G]}G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[YT]N{I|L}A{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}A[YN]{I|L}T{M(Oxidation (M))|F};[{I|L}T]A{M(Oxidation (M))|F}[YN]{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VS]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 10.74;9.9864;8.574;8.5679;8.5235;8.158;7.5438;7.3452;7.1414;6.9405 +;-;-;-;-;-;-;-;-;- + 1287 NaN NaN 274853.9 NaN 19942 4372 24315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24317 95.96 NaN 609900 35 0 60542 0.261 -1 0 91 466.60798292993655 1396.8021193900097 3 466.6080627441406 MULTI HCD FTMS 0 0 0 24315 224578.515625 0.23405644103380563 18 -0.3544769287109375 2 NaN NaN 1 WQV 3 -1 13.672 0 0 0.97882 0 0 580.3888636300472 400.20395837955317 980.5928220096005 0 0 0 0 0 0.5 0 0 0 WQV 0.97882 - 88 + NaN NaN 188782.4 NaN 19943 4372 24315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24318 95.964 NaN 132750 35 0 34365 0.261 + 8108 GLFAGECF 8 39 422.18862777851774 842.3627026238355 2 422.1889343261719 MULTI HCD FTMS 0 0 0 24315 120471.3984375 0.6848251935521261 8 -0.126312255859375 3 Unmodified _GLFAGECF_ REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.6595 0 0 677.2837516734434 0 677.2837516734434 0 1.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6595 + + 3 + NaN NaN 116353.1 NaN 19944 4372 24315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24319 95.967 NaN 152210 35 0 38401 0.261 + 17164 LYLRMDCKR 9 37 599.3149303722349 1196.6153078112698 2 599.3152465820312 MULTI HCD FTMS 0 0 0 24315 38049.33984375 0.3482988064279923 12 -0.21787261962890625 4 Unmodified _LYLRMDCKR_ REV__ENST00000465664.1_1_3:121555513-121555606:+|nuORF 5.230669730166228 0.3113646817964458 1 [Y{I|L}]{I|L}EGD{I|L} 7 -1 40.934 0 0 3.4209 0 0 0 390.1694819658198 390.1694819658198 26.320232147054057 0 0 0 0 0 2 0 0 [Y{I|L}]{I|L}EGD{I|L} 3.4209 - 208 NaN NaN 104649.6 NaN 19945 4372 24315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24320 95.97 NaN 153270 35 0 10970 0.261 + 6167 FPEIQGFLQL 10 43 596.3242788416504 1190.6340047501008 2 596.3234252929688 MULTI HCD FTMS 0 0 0 24315 46290.18359375 0.10209042176916883 -11 0.21146392822265625 5 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 20.580933911654288 0.31860490502175054 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}PY{I|L}Q{I|L} 7 6 43.04 0 0 3.6149 0 0 264.1147633283219 0 264.1147633283219 0 24.635701079416634 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}PY{I|L}Q{I|L} 3.6149 - 113 NaN NaN 107321 NaN 19946 4372 24315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24322 95.975 NaN 527680 35 0 80614 0.327 + 19930 NYFPGGVALIW 11 64 618.8242645778104 1235.6339762224206 2 618.823974609375 MULTI HCD FTMS 0 0 0 24321 460072.375 1 0 0 1 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 123.45060196383646 0.01485549788078869 1 [YN]{M(Oxidation (M))|F}PNVA{I|L}{I|L}W 10 2 + 102.8 0 0 8.3198 8.3198 91.179 0 0 0 20.185690803236298 16.53212513775344 16.53212513775344 9.164539485499247 0 3.2856668758921828 1.154901959985743 0 1.2302046884880937 [YN]{M(Oxidation (M))|F}PNVA{I|L}{I|L}W;[YN]{M(Oxidation (M))|F}PGGVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}[YG]PNVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AVNP[YG]W;{[CT]|[{M(Oxidation (M))|F}G]}[YG]PGGVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AVGGP[YG]W;[YN]{M(Oxidation (M))|F}P[{I|L}V]{[QG]|[NA]}{I|L}W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}[{M(Oxidation (M))|F}T]A{I|L}P{[DS]|[MA]|[CV]|TT} 8.3198;7.5781;5.6871;4.5867;4.2965;3.8479;3.2693;1.6343 -;+;-;-;-;-;-;- + 474 NaN NaN 161945.5 NaN 19947 4373 24321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24323 95.98 NaN 72000 35 0 8911.5 0.263 + 15223 LNVSKERK 8 34 487.29279508643566 NaN 0 487.2923583984375 PEAK HCD FTMS 0 0 0 24321 17761.16796875 1 0 0 2 Unmodified _LNVSKERK_ SMYD1|p.E260K|1|0.16|ENSG00000115593|chr2:88096674-88096674|G/A|missense_variant 2.0597508629832335 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 8 3.9794 0 0 0.40916 0 0 662.5900324562714 146.9267519586547 809.5167844149261 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.40916 - 3 + NaN NaN 95527.9 NaN 19948 4373 24321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24325 95.985 NaN 386520 35 0 55111 0.327 + 34536 YPIAVLIDEL 10 54 573.326194628548 1144.637836323896 2 573.3262939453125 MULTI HCD FTMS 0 0 0 24324 161553.25 0.34250277463007583 1 -0.0126800537109375 1 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 96.28474662873226 0.000520040862558024 1 D{I|L}{I|L}VA{I|L}E{I|L} 8 5 82.644 0 0 7.2201 0 0 260.1366139142594 0 260.1366139142594 0 63.436172372683046 0 0 0 2.2302046884880937 0 1.1861818737241734 0 D{I|L}{I|L}VA{I|L}E{I|L} 7.2201 - 136 NaN NaN 151998.8 NaN 19949 4374 24324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24326 95.989 NaN 398050 35 0 55596 0.261 + 20673 PFLPASNLFF 10 59 576.8081963962168 1151.6018398592335 2 576.8080444335938 MULTI HCD FTMS 0 0 0 24324 132132.609375 0.2862682044549515 11 -0.21819305419921875 2 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 55.50274090549119 0.0577772802216 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 77.202 0 0 6.7039 6.7039 91.035 0 0 0 22.498774732165998 70.03469351593509 22.498774732165998 12.971736348700091 0 2.2302046884880937 1.5228787452803376 0 0.3807196863200844 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NS][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7039;5.5774;5.0137 +;-;- + 174 NaN NaN 141357.2 NaN 19950 4374 24324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24327 95.992 NaN 41431 35 0 4844 0.262 + -1 LDSYMLLP 8 31 484.24517822265625 NaN 0 484.24517822265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _LDSYM(Oxidation (M))LLP_ REV__ENSG00000182156|ENST00000328313|ENPP7 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91996.4 NaN 19951 4374 24324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24329 95.997 NaN 170380 35 0 14465 0.327 + 14803 LIPEEFFQF 9 51 585.2976041420748 1168.5806553509494 2 585.8131103515625 MULTI HCD FTMS 0 0 0 24328 10922.6376953125 0.2205445848333025 7 -0.1235504150390625 1 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 29.425 0 0 2.518 0 0 728.3733361463968 0 728.3733361463968 0 19.960762528683702 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.518 + + 199 NaN NaN 123829.3 NaN 19952 4375 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24330 96.002 NaN 158480 35 0 19002 0.261 + 26385 SSSCSLWGTSF 11 52 581.2469212284967 1160.4792895237933 2 581.2466430664062 MULTI HCD FTMS 0 0 0 24328 70581.7734375 0.20760478559215456 -7 0.0965423583984375 2 Unmodified _SSSCSLWGTSF_ nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 11.494710602746466 0.35692862141139436 1 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F} 9 8 + 70.429 0 0 6.0689 6.0689 88.052 0 0 0 24.13734275855269 49.45940619637945 24.13734275855269 9.208187539523749 0 2.5356668758921828 1.6989700043360187 0 0 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}N{[VA]|[{I|L}G]}[MN]TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[{M(Oxidation (M))|F}H]|[RQ]}[MN]TS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}]C(Carbamidomethyl (C)){M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}][CG]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6.0689;5.2754;4.7577;4.2779;3.0688;2.2753 -;-;-;-;-;- 213 NaN NaN 114535.1 NaN 19953 4375 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24331 96.005 NaN 250900 35 0 33742 0.261 + 35952 YYVFDKFI 8 59 547.7801882030061 1093.5458234728121 2 547.7820434570312 MULTI HCD FTMS 0 0 0 24328 30551.134765625 0.2735889466167363 -6 0.0770111083984375 3 Unmodified _YYVFDKFI_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 15.847184025352803 0.47719562709667024 1 YY 2 6 39.196 0 0 3.5843 0 0 0 764.3959181414295 764.3959181414295 15.612431371158735 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5843 + + 87 + NaN NaN 127746 NaN 19954 4375 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24333 96.01 NaN 1824300 35 0 353910 0.327 + 2861 DYNFVFTSF 9 87 570.2558471177643 1138.4971413023286 2 570.2560424804688 MULTI HCD FTMS 0 0 0 24332 880093.625 0.34089267971146114 -6 0.07704925537109375 1 Unmodified _DYNFVFTSF_ ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 173.68634876852585 1.8204875074637502E-09 1 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 110.93 0 0 9.7432 9.7432 97.218 0 0 0 25.04863339151541 80.74925630161275 25.04863339151541 25.757659435244733 0 2.774227503252014 1.3979400086720375 0.9802046884880937 1.6549471895720984 + + {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[YT]{[VA]|[{I|L}G]}{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};[YQ][YG]V{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]V{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}ES{M(Oxidation (M))|F} 9.7432;7.4808;4.663;4.2439;4.2439;3.365;2.9059;2.8188;2.6642;2.4868 +;-;-;-;-;-;-;-;-;- + 1389 NaN NaN 359624.4 NaN 19955 4376 24332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24334 96.015 NaN 213750 35 0 20862 0.261 -1 0 49 622.8020327154419 1243.5895124976837 2 622.8016967773438 MULTI HCD FTMS 0 0 0 24332 95504.2890625 0.06795283684571761 28 -0.582366943359375 2 NaN NaN 1 {M(Oxidation (M))|F}DPE 4 -1 43.972 0 0 3.5359 0 0 737.3713475084138 0 737.3713475084138 0 19.535247228595267 0 0 0 1.1237125054200234 0 0.3807196863200844 0 {M(Oxidation (M))|F}DPE 3.5359 - 101 NaN NaN 122442.6 NaN 19956 4376 24332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24335 96.018 NaN 317630 35 0 25816 0.262 + 25578 SFSSLFFFL 9 76 547.7801882030061 1093.5458234728121 2 548.7706298828125 MULTI HCD FTMS 0 0 0 24332 10459.0498046875 0.4653283050963515 -5 0.06745147705078125 3 Unmodified _SFSSLFFFL_ ENST00000463586.1_1_1:171481117-171481318:+|nuORF 13.50788311687929 0.24365122550260465 1 YY[WR]{M(Oxidation (M))|F}{I|L} 6 7 23.306 0 0 2.1312 0 0 0 162.05600916080314 162.05600916080314 0.15285822574753638 0 0 0 0 0.3807196863200844 2 0 0 YY[WR]{M(Oxidation (M))|F}{I|L} 2.1312 - 262 + NaN NaN 133593.5 NaN 19957 4376 24332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24337 96.023 NaN 987100 35 0 113540 0.327 + 5863 FPDFPTPGVVF 11 56 611.8110689456707 1221.6075849581414 2 611.8110961914062 MULTI HCD FTMS 0 0 0 24336 536268.5625 0.08666261460582561 26 -0.5432968139648438 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 51.629811660486645 0.07472562200723704 1 {M(Oxidation (M))|F}PT[RP]V{M(Oxidation (M))|F} 7 5 41.783 0 0 3.4203 0 0 359.14781047108613 0 359.14781047108613 0 34.7931914553854 0 0 0 2.079689690656103 0 0.8494850021680094 0 {M(Oxidation (M))|F}PT[RP]V{M(Oxidation (M))|F} 3.4203 - 41 NaN NaN 224666.3 NaN 19958 4377 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24338 96.028 NaN 772010 35 0 86539 0.262 + 30518 VMPSSFFLL 9 52 520.7779327551017 1039.5413125770033 2 520.7779541015625 MULTI HCD FTMS 0 0 0 24336 196199.890625 0.6628592323924487 -5 0.06768035888671875 2 Unmodified _VMPSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 85.35673624503755 0.00464763827098139 1 {[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 48.879 0 0 4.702 4.702 90.497 0 0 0 1.14393726401687 41.91630954681237 1.14393726401687 48.879034430739026 0 2.079689690656103 0 0.6989700043360187 0 + + {[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.702 + + 62 NaN NaN 203537.5 NaN 19959 4377 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24339 96.031 NaN 225350 35 0 11210 0.261 + 30910 VQVVVWIT 8 75 472.2835321808475 NaN 0 472.2835388183594 PEAK HCD FTMS 0 0 0 24336 123297.8203125 0.7758366824687325 -5 0.06768035888671875 3 Unmodified _VQVVVWIT_ REV__ENSG00000165323|ENST00000525166|FAT3;REV__FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;REV__nc|ENSG00000165323|Q8TDW7|FAT3 2.302733041254933 0.38822285293237185 1 Q 1 -1 5.4846 0 0 0.58188 0 0 268.177463676345 543.3021944635374 811.4796581398823 0 0 0 0 0 0 0 0 0 Q 0.58188 + + 11 + NaN NaN 116486.5 NaN 19960 4377 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24341 96.036 NaN 1623600 35 0 421180 0.327 + 982 AYFNFPELL 9 88 557.2843863626786 1112.554219792157 2 557.28466796875 MULTI HCD FTMS 0 0 0 24340 306298.28125 0.004002923748383401 24 -0.504180908203125 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 103.35351024395868 0.004027461563756449 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 87.861 0 0 7.8973 7.8973 94.351 0 0 0 19.58803062383447 57.25358075688469 19.58803062383447 20.445312593723997 0 2.311604235276773 1.154901959985743 0.23965182871044374 1.1237125054200234 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}T]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YT][{M(Oxidation (M))|F}T]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}[DP]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP][HT]H{I|L};[YT]K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KT]C{I|L};[HQ]E{I|L}[MT]E{I|L}{I|L} 7.8973;6.0596;3.6274;3.2496;3.1384;2.7797;2.3352;2.1644;2.0378;1.9575 +;-;-;-;-;-;-;-;-;- + 1917 NaN NaN 331878.7 NaN 19961 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24342 96.041 NaN 750370 35 0 92405 0.261 + 26150 SPMDIFDMF 9 70 559.7301072714724 1117.4456616097448 2 559.7302856445312 MULTI HCD FTMS 0 0 0 24340 407515.4375 0.7670319341412744 5 -0.1143341064453125 2 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 120.45040980043947 0.0012363446172167195 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AD{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} + + 77.497 0.22879 0.09373 6.9352 6.9352 64.997 0 0 0 0 61.63380425640881 0 0 0 2.75 0 1.3807196863200843 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AD{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.9352 - 583 + NaN NaN 214460.4 NaN 19962 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24343 96.044 NaN 891150 35 0 102920 0.261 + 30519 VMPSSFFLL 9 66 520.7779327551017 1039.5413125770033 2 520.7779541015625 MULTI HCD FTMS 0 0 0 24340 168780.546875 0.5702232727447026 -4 0.05144500732421875 3 Unmodified _VMPSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 85.35673624503755 0.00464763827098139 1 {[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 50.913 0 0 4.8976 4.8976 89.471 0 0 0 0.5192435809753704 44.97093142085326 0.5192435809753704 23.47032539791456 0 2.1861818737241734 0 0.6989700043360187 0 + + {[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DG]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}{I|L} 4.8976;2.6399 +;- + 84 NaN NaN 219887.8 NaN 19963 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24344 96.047 NaN 466200 35 0 33406 0.261 + 1642 CARRPLHLL 9 80 539.8183815700964 1077.6222102069928 2 539.818359375 MULTI HCD FTMS 0 0 0 24340 54285.921875 0.25439299031163903 5 -0.1143341064453125 4 Unmodified _CARRPLHLL_ REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF 21.74664581756881 0.17247014374749275 1 V{I|L}{I|L}H{I|L}{I|L} 6 -1 39.162 0 0 3.6341 0 0 371.1477223126969 0 371.1477223126969 0 19.69782205064881 0 0 0 1.8807196863200843 0 0 0 V{I|L}{I|L}H{I|L}{I|L} 3.6341 - 577 NaN NaN 155881.4 NaN 19964 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24345 96.051 NaN 355580 35 0 129570 0.261 -1 HCWDSFIY 8 40 564.2348933677965 1126.455233802393 2 564.2349243164062 MULTI HCD FTMS 0 0 0 24340 24102.9296875 0.11965669126477356 -4 0.05144500732421875 5 Carbamidomethyl (C) _HC(Carbamidomethyl (C))WDSFIY_ ENSG00000165164|ENST00000378653|CFAP47 0.7936320650641473 0.540814922690045 1 H 1 -1 2.2185 0 0 0.19694 0 0 470.19004933149296 516.1941012018186 986.3841505333116 0 0 0 0 0 0 0 0 0 H 0.19694 + + 2 + NaN NaN 138548.1 NaN 19965 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24346 96.054 NaN 73728 35 0 9998.8 0.261 + 14632 LFYTIVTPL 9 36 533.8130226054468 NaN 0 533.8125610351562 PEAK HCD FTMS 0 0 0 24340 14744.2890625 0.4995895253894347 -5 0.06109619140625 6 Unmodified _LFYTIVTPL_ ENSG00000188558|ENST00000641804|OR2G6 7.910154910731844 0.25691533546754686 1 {I|L} 1 8 5.3567 0 0 0.50268 0 0 624.3846684024967 325.1189058893188 949.5035742918155 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.50268 + + 1 + NaN NaN 105013.5 NaN 19966 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24347 96.057 NaN 80365 35 0 16567 0.261 + 22981 RAAWMPAC 8 39 453.20959250377206 NaN 0 453.2101135253906 PEAK HCD FTMS 0 0 0 24340 25578.798828125 0.19622271338538072 24 -0.504180908203125 7 Unmodified _RAAWMPAC_ ENSG00000008300|ENST00000164024|CELSR3;ENST00000461362.5_1_3:48675640-48681145:-|nuORF;ENST00000498057.1_1_3:48680363-48680537:-|nuORF;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101522.5 NaN 19967 4378 24340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24349 96.062 NaN 1262900 35 0 260990 0.327 + 27263 SYPNVFLVF 9 51 543.287036330997 1084.559519728794 2 543.287109375 MULTI HCD FTMS 0 0 0 24348 736501.875 0.14902437842423866 -5 0.0776214599609375 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 99.79894945604345 0.0042691968066200965 1 {[{M(Oxidation (M))|F}C]|[YS]}[NP]V{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 9 0 + 81.137 0 0 7.4811 7.4811 95.804 0 0 0 16.478174818886373 59.96584697476848 16.478174818886373 61.85464087144375 0 2.9247425010840047 0 1.7302046884880937 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}[NP]V{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};[NP]V[{I|L}T]V[NP][MT] 7.4811;1.7779 +;- + 170 NaN NaN 285280.6 NaN 19968 4379 24348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24350 96.067 NaN 503880 35 0 140180 0.261 + 28268 TLMEEVLLL 9 44 530.801624422353 1059.588695911506 2 530.8016967773438 MULTI HCD FTMS 0 0 0 24348 228331.609375 0.3659815830399114 -4 0.06494140625 2 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 28.486842064014134 0.11819662193267319 1 V{I|L}{I|L}{I|L} 4 5 46.938 0 0 4.4299 0 0 603.25981337715 0 603.25981337715 0 46.938200260161125 0 0 0 1.5 0 0 0 + V{I|L}{I|L}{I|L} 4.4299 + + 22 NaN NaN 156623.8 NaN 19969 4379 24348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24351 96.07 NaN 451130 35 0 37808 0.261 + -1 MESMCCCIIQ 10 74 596.7115531044001 1191.4085532756 2 596.711181640625 MULTI HCD FTMS 0 0 0 24348 84898.6328125 0.5349739326957377 -2 0.0391082763671875 3 2 Oxidation (M) _M(Oxidation (M))ESM(Oxidation (M))CCCIIQ_ REV__ENSG00000163625|ENST00000295888|WDFY3;REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 6.723162845929126 0.4397169348982109 1 {I|L}[Q{I|L}] 3 -1 13.952 0 0 1.1711 0 0 819.1717440917297 0 819.1717440917297 0 2.983324797206281 0 0 0 0 0 0 0.6505149978319906 {I|L}[Q{I|L}] 1.1711 + + 73 + NaN NaN 160134.5 NaN 19970 4379 24348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24352 96.074 NaN 167520 35 0 25864 0.261 -1 VYADIPFLLM 10 54 599.3149303722349 1196.6153078112698 2 599.312744140625 MULTI HCD FTMS 0 0 0 24348 23022.953125 0.2107491779572175 19 -0.399169921875 4 Oxidation (M) _VYADIPFLLM(Oxidation (M))_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 6.723162845929126 0.4397169348982109 1 [Y{I|L}]{I|L}WD{I|L}ND 8 -1 42.573 0 0 3.5578 0 0 0 161.09379837206976 161.09379837206976 23.989568978889935 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]{I|L}WD{I|L}ND 3.5578 - 193 NaN NaN 102655.8 NaN 19971 4379 24348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24353 96.077 NaN 120430 35 0 21269 0.261 + 10146 IFPQFLYQF 9 43 601.8158489252704 1201.6171449173407 2 602.3135375976562 MULTI HCD FTMS 0 0 0 24348 22057.72265625 0.37465219564344626 -9 0.12906646728515625 5 Unmodified _IFPQFLYQF_ ENSG00000068650|ENST00000375645|ATP11A 3.944395688203298 0.32111559684428237 1 {I|L} 1 8 6.9897 0 0 0.58169 0 0 632.3264477511283 453.1773704490845 1085.5038182002127 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.58169 + + 15 + NaN NaN 103950.5 NaN 19972 4379 24348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24355 96.082 NaN 344180 35 0 26287 0.326 + 1873 CWCIFTFSF 9 59 577.2455459156511 1152.476538898102 2 577.2451782226562 MULTI HCD FTMS 0 0 0 24354 64093.14453125 0.6106101209360346 -2 0.0457000732421875 1 Unmodified _CWCIFTFSF_ REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF 11.640296217721598 0.25978676193971967 1 N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 7 -1 57.598 0 0 4.9978 0 0 292.0723773764208 0 292.0723773764208 0 52.11381036606788 0 0 0 2.4802046884880937 0 0.4247425010840047 0 N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4.9978 - 114 + NaN NaN 133378.4 NaN 19973 4380 24354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24356 96.086 NaN 139800 35 0 22645 0.262 + 25690 SILWPDLL 8 50 478.7762973944334 955.5380418556668 2 478.77581787109375 MULTI HCD FTMS 0 0 0 24354 45612.16015625 0.07648860025237862 -9 0.1389923095703125 2 Unmodified _SILWPDLL_ ENST00000329314.5_1_4:165897854-165898724:-|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}{I|L} 2 6 25.969 0 0 2.7177 0 0 711.3599602490951 0 711.3599602490951 0 20.48455006504028 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.7177 + + 19 NaN NaN 102612.4 NaN 19974 4380 24354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24357 96.09 NaN 63403 35 0 5921.1 0.261 + 29481 TYVGIGWLI 9 34 511.2891933826655 NaN 0 511.2888488769531 PEAK HCD FTMS 0 0 0 24354 21162.587890625 0.4356438864040125 7 -0.16327667236328125 3 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 15.847184025352803 0.21527282152051216 1 {I|L} 1 8 11.99 0 0 1.1748 0 0 131.09331275927622 773.3629854791624 904.4562982384386 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.1748 + + 5 + NaN NaN 91027.8 NaN 19975 4380 24354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24359 96.095 NaN 603130 35 0 58634 0.327 + 14537 LFEQYFII 8 69 536.789559881495 1071.56456682979 2 537.779296875 MULTI HCD FTMS 0 0 0 24358 49591.90234375 1 0 0 1 Unmodified _LFEQYFII_ REV__ENSG00000104361|ENST00000430223|NIPAL2;REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF;REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 21.74664581756881 0.4337896562907935 1 [Y{I|L}]QD{M(Oxidation (M))|F}Y{I|L} 7 -1 34.344 0 0 3.2051 0 0 0 126.10459906704911 126.10459906704911 2.1818682198891324 0 0 0 0 0 1.3010299956639813 0.6139829889124311 0 [Y{I|L}]QD{M(Oxidation (M))|F}Y{I|L} 3.2051 - 515 NaN NaN 176689.2 NaN 19976 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24360 96.099 NaN 542720 35 0 46079 0.261 + 6168 FPEIQGFLQL 10 62 596.3242788416504 1190.6340047501008 2 596.3242797851562 MULTI HCD FTMS 0 0 0 24358 203191.5 0.4481275364332507 -2 0.03243255615234375 2 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 53.31671820480216 0.06572736166898346 1 {I|L}MQG{M(Oxidation (M))|F}{I|L}Q{I|L} 8 4 67.274 0 0 5.6503 0 0 242.1264363019547 0 242.1264363019547 0 48.48889742371611 0 0 0 2.055462187404089 0 0 0 {I|L}MQG{M(Oxidation (M))|F}{I|L}Q{I|L} 5.6503 - 374 NaN NaN 169486.7 NaN 19977 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24361 96.103 NaN 232350 35 0 15955 0.261 + 14804 LIPEEFFQF 9 67 585.2976041420748 1168.5806553509494 2 585.8137817382812 MULTI HCD FTMS 0 0 0 24358 9682.4677734375 0.19550367730049562 13 -0.275909423828125 3 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 8.745405648335112 0.2847203663274469 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 20.406 0 0 1.7462 0 0 728.374805275816 0 728.374805275816 0 11.778259348524358 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 1.7462 + + 147 NaN NaN 129119.5 NaN 19978 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24362 96.106 NaN 147710 35 0 21550 0.261 -1 YIFPAVILMD 10 49 599.3149303722349 1196.6153078112698 2 599.3153686523438 MULTI HCD FTMS 0 0 0 24358 34641.4609375 0.3171035173540617 21 -0.4455718994140625 4 Oxidation (M) _YIFPAVILM(Oxidation (M))D_ tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1 3.5964929083625545 0.45626689593999237 1 K 1 -1 6.9897 0 0 0.58412 0 0 165.11707589882855 900.3881319635374 1065.505207862366 0 0 0 0 0 0 0 0 0 K 0.58412 - 78 + NaN NaN 114067.3 NaN 19979 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24363 96.109 NaN 84337 35 0 6606.9 0.261 + 7772 FYNPFQFEI 9 36 602.7873747336658 1203.5601965341316 2 602.7877197265625 MULTI HCD FTMS 0 0 0 24358 28652.296875 0.027266108374806138 27 -0.59600830078125 5 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 8.745405648335112 0.2847203663274469 1 R 1 9 6.2814 0 0 0.52191 0 0 424.1790452663566 620.2719210260374 1044.450966292394 0 0 0 0 0 0.3807196863200844 0 0 0 R 0.52191 - 10 + NaN NaN 114163.6 NaN 19980 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24364 96.113 NaN 113390 35 0 9041.9 0.261 + 14805 LIPEEFFQF 9 51 585.2976041420748 1168.5806553509494 2 585.2980346679688 MULTI HCD FTMS 0 0 0 24358 56665.75390625 0.775535146582246 12 -0.25655364990234375 6 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 25.662 0 0 2.196 0 0 728.374755117971 0 728.374755117971 0 14.69273760456403 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.196 + + 67 NaN NaN 101866 NaN 19981 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24365 96.116 NaN 97487 35 0 10889 0.261 + 8041 GGYGGGNG 8 31 638.252867898923 637.245591432323 1 638.267333984375 MULTI HCD FTMS 0 0 0 24358 6351.880859375 0.853545652233536 -1 0.012908935546875 7 Unmodified _GGYGGGNG_ REV__ENSG00000175592|ENST00000312562|FOSL1;REV__FOSL1|p.E211Nfs*11|1|0.25|ENSG00000175592|chr11:65893072-65893072|A/-|frameshift_variant;REV__nc|ENSG00000175592|P15407-2|FOSL1 0 0.5419923896992614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93681.6 NaN 19982 4381 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24367 96.121 NaN 391480 35 0 60856 0.327 + 34537 YPIAVLIDEL 10 55 573.326194628548 1144.637836323896 2 573.3260498046875 MULTI HCD FTMS 0 0 0 24366 282740.5625 0.5994272919716463 9 -0.20842742919921875 1 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 96.28474662873226 0.000520040862558024 1 AV{I|L}{I|L}DE{I|L} 7 3 70.098 0 0 6.1241 0 0 373.19852706431453 0 373.19852706431453 0 44.69228530870048 0 0 0 3.0356668758921828 0 1.7302046884880937 0 + AV{I|L}{I|L}DE{I|L} 6.1241 + + 134 + NaN NaN 143097.5 NaN 19983 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24368 96.125 NaN 746000 35 0 132880 0.261 + 35907 YYTDFLITL 9 64 574.7973324597949 1147.5801119863897 2 574.7972412109375 MULTI HCD FTMS 0 0 0 24366 519217.15625 0.6192768985414465 -2 0.03908538818359375 2 Unmodified _YYTDFLITL_ ENSG00000127990|ENST00000648936|SGCE;ENST00000462731.1_1_7:94229956-94232691:-|nuORF;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE 128.3654064809346 0.00070410514679239 1 YYTD{M(Oxidation (M))|F}{I|L}{I|L}T{I|L} 9 0 + 85.305 0 0 7.4335 7.4335 87.54 0 0 0 17.772336398234003 49.85551652583935 17.772336398234003 3.922042885466084 0 2.113982988912431 1.5228787452803376 1.5114393726401687 0 + + YYTD{M(Oxidation (M))|F}{I|L}{I|L}T{I|L};YYDT{M(Oxidation (M))|F}{I|L}{I|L}T{I|L} 7.4335;7.0917 +;- + 219 NaN NaN 195885.4 NaN 19984 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24369 96.129 NaN 208960 35 0 28808 0.261 + 19931 NYFPGGVALIW 11 49 618.8242645778104 1235.6339762224206 2 618.823974609375 MULTI HCD FTMS 0 0 0 24366 185175.78125 0.40249271921618857 9 -0.20842742919921875 3 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 32.78568957990786 0.18341249061758555 1 MA{I|L}{I|L}W 5 7 45.701 0 0 3.6986 0 0 603.3117542951187 0 603.3117542951187 0 30.243500300354142 0 0 0 1.4247425010840047 0 0 0 MA{I|L}{I|L}W 3.6986 - 45 NaN NaN 128053.3 NaN 19985 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24370 96.132 NaN 250940 35 0 41393 0.261 + -1 DYYEWCLE 8 55 589.229352902283 1176.444152871366 2 589.229248046875 MULTI HCD FTMS 0 0 0 24366 76419.703125 0.7760428401785504 -2 0.03908538818359375 4 Carbamidomethyl (C) _DYYEWC(Carbamidomethyl (C))LE_ REV__ENSG00000196620|ENST00000338206|UGT2B15 18.13498045792455 0.4603629008820478 1 DY 2 -1 23.583 0 0 2.0046 0 0 0 895.3304214295464 895.3304214295464 -1.1928031367991565 0 -1.1928031367991565 0 0 0.5 0 0 0 DY 2.0046 + + 25 + NaN NaN 127971.4 NaN 19986 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24371 96.136 NaN 145500 35 0 25312 0.261 + 15064 LLVCGFLYQF 10 41 601.8158489252704 1201.6171449173407 2 602.3170776367188 MULTI HCD FTMS 0 0 0 24366 52798.49609375 0.8967867080598387 -6 0.110626220703125 5 Unmodified _LLVCGFLYQF_ ENSG00000118017|ENST00000236709|A4GNT 14.838274106304384 0.3723198072575719 1 {I|L}YQ{M(Oxidation (M))|F} 4 6 33.443 0 0 2.7832 0 0 632.331834861525 0 632.331834861525 0 27.95880017344075 0 0 0 0.5 0 0 0 + {I|L}YQ{M(Oxidation (M))|F} 2.7832 + + 22 NaN NaN 109940.5 NaN 19987 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24372 96.139 NaN 52973 35 0 4190.6 0.263 + 14132 LADHYPPP 8 40 455.2252434446774 NaN 0 455.22454833984375 PEAK HCD FTMS 0 0 0 24366 25078.94921875 0.5366441517573097 -8 0.13623046875 6 Unmodified _LADHYPPP_ REV__ENSG00000178233|ENST00000451188|TMEM151B 5.230669730166228 0.38822285293237185 1 Q 1 -1 5.4846 0 0 0.60374 0 0 344.20853024697357 433.14997278385005 777.3585030308236 0 0 0 0 0 0 0 0 0 Q 0.60374 - 7 + NaN NaN 102901.5 NaN 19988 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24373 96.142 NaN 54551 35 0 5817.6 0.261 + 17237 LYNWLEVEF 9 31 606.8017254041602 NaN 0 606.8013916015625 PEAK HCD FTMS 0 0 0 24366 23006.556640625 0.6973479204222205 -2 0.03908538818359375 7 Unmodified _LYNWLEVEF_ EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant;ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 6.2057823575117 0.2651744870083793 1 E 1 8 15.044 0 0 1.2417 0 0 393.19035158781395 686.3311251275999 1079.5214767154139 0 0 0 0 0 0.805462187404089 0 0 0 + E 1.2417 + + 4 + NaN NaN 96616 NaN 19989 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24374 96.146 NaN 94376 35 0 8412.1 0.263 + 22552 QSGSVFQLL 9 42 489.7671121207524 977.5196713083049 2 490.2688293457031 MULTI HCD FTMS 0 0 0 24366 17081.69921875 0.276857188803432 -9 0.14588165283203125 8 Unmodified _QSGSVFQLL_ ENSG00000161640|ENST00000447370|SIGLEC11 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 25.969 0 0 2.6566 0 0 733.3406800589844 0 733.3406800589844 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6566 + + 2 NaN NaN 93629.2 NaN 19990 4382 24366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24376 96.151 NaN 3386100 35 0 640160 0.327 + 2862 DYNFVFTSF 9 101 570.2558471177643 1138.4971413023286 2 570.2560424804688 MULTI HCD FTMS 0 0 0 24375 1812641.375 0.702102774212934 1 -0.02292633056640625 1 Unmodified _DYNFVFTSF_ ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 201.56835220063672 1.5491848823648643E-17 1 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 117.37 0 0 10.309 10.309 97.523 0 0 0 27.277784704543308 79.72518806278298 27.277784704543308 24.56485629844559 0 2.973197507588033 1.3979400086720375 1.4478224950233995 1.5356668758921828 + + {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}ES{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}C{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}GG 10.309;8.1514;5.7007;5.5058;4.977;4.0209;3.826;3.2972;2.1646;2.0105 +;-;-;-;-;-;-;-;-;- + 2590 NaN NaN 603154.1 NaN 19991 4383 24375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24377 96.155 NaN 735100 35 0 155120 0.261 -1 0 70 554.2781484664222 1106.5417439996443 2 554.2782592773438 MULTI HCD FTMS 0 0 0 24375 388472.0625 0.6024462472391953 -1 0.02954864501953125 2 NaN NaN 1 {M(Oxidation (M))|F}CPN 4 -1 30.165 0 0 2.7261 0 0 0 642.3275850885374 642.3275850885374 2.3341064903992503 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}CPN 2.7261 - 139 + NaN NaN 196376.5 NaN 19992 4383 24375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24378 96.159 NaN 477090 35 0 51685 0.261 + -1 FFGIMCHSF 9 67 581.2469212284967 1160.4792895237933 2 581.2469482421875 MULTI HCD FTMS 0 0 0 24375 256116.671875 0.7533254572905911 1 -0.02292633056640625 3 Carbamidomethyl (C),Oxidation (M) _FFGIM(Oxidation (M))C(Carbamidomethyl (C))HSF_ REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF 23.1484247019978 0.1603590852062899 1 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F} 9 -1 + 76.666 0 0 6.6064 6.6064 89.067 0 0 0 18.63138265807231 3.208953564264206 3.208953564264206 9.208187539523749 0 2.774227503252014 2 0.6861818737241735 0 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]T{M(Oxidation (M))|F}S;[C(Carbamidomethyl (C))N]T{NN|[MP]|[D{I|L}]|[EV]}G{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}VE[C(Carbamidomethyl (C))K]S;{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}[HM]T{M(Oxidation (M))|F}S;{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}VE[C(Carbamidomethyl (C))K]S;{[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V[KC]GES;{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}]C(Carbamidomethyl (C)){M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}]GC{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6.6064;5.8129;5.2451;5.0009;4.8605;4.4517;4.067;4.0626;4.0079;3.9002 -;-;-;-;-;-;-;-;-;- 836 NaN NaN 162089.2 NaN 19993 4383 24375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24379 96.162 NaN 540620 35 0 68161 0.261 -1 PPDCQTTTSF 10 78 577.2455459156511 1152.476538898102 2 577.7643432617188 MULTI HCD FTMS 0 0 0 24375 42536.96875 0.6288014477581172 1 -0.02292633056640625 4 Carbamidomethyl (C) _PPDC(Carbamidomethyl (C))QTTTSF_ ENST00000257013.8_1_X:134166773-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF 26.268140514670165 0.2654086933305545 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6 -1 59.796 0 0 5.1885 0 0 406.1114398764208 0 406.1114398764208 0 52.026799997543264 0 0 0 2.4291746928241125 0 0.5774509799928715 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.1885 - 499 + NaN NaN 165627.3 NaN 19994 4383 24375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24380 96.165 NaN 216380 35 0 16794 0.261 + -1 KSKRCYDLT 9 57 585.8005782551662 NaN 0 585.7885131835938 PEAK HCD FTMS 0 0 0 24375 11738 1 0 0 5 Carbamidomethyl (C) _KSKRC(Carbamidomethyl (C))YDLT_ REV__ENSG00000150961|ENST00000280551|SEC24D;REV__nc|ENSG00000150961|O94855-2|SEC24D;REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant 4.3292370932331545 0.2742679634796037 1 {M(Oxidation (M))|F}DDW 4 -1 12.479 0 0 1.067 0 0 352.2592242820136 251.10129724674064 603.3605215287542 0 0 0 0 0 0.3054621874040891 0 0.7742275032520141 0 {M(Oxidation (M))|F}DDW 1.067 - 39 + NaN NaN 117302.4 NaN 19995 4383 24375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24381 96.168 NaN 120940 35 0 33513 0.264 + 32749 WRDNLSPCKSP 11 44 434.8822665355152 NaN 0 434.882568359375 PEAK HCD FTMS 0 0 0 24375 77730.0546875 0.4657586567578924 31 -0.6640777587890625 6 Unmodified _WRDNLSPCKSP_ REV__BRCA1|p.D1505N|1|0.21|ENSG00000012048|chr17:43074493-43074493|C/T|missense_variant 1.1097533296519684 0.33897209286470975 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100368.9 NaN 19996 4383 24375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24383 96.173 NaN 1526000 35 0 349720 0.327 + 983 AYFNFPELL 9 94 557.2843863626786 1112.554219792157 2 557.2847290039062 MULTI HCD FTMS 0 0 0 24382 1003450.3125 0.013113802238252013 30 -0.6411514282226562 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 92.65332237495696 0.004456439685314431 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 80.266 0 0 7.2145 7.2145 93.167 0 0 0 13.396125489548396 45.56286500587112 13.396125489548396 19.59544243948811 0 2.2288559305164175 1.154901959985743 0 1.0387254899964358 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YT][{M(Oxidation (M))|F}T]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[EP]{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[RV]N{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[RV]QC{I|L};[HQ]P[RV]NC{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[RV]NC{I|L}{M(Oxidation (M))|F} 7.2145;5.4532;3.894;3.3481;3.2025;3.0209;2.937;2.8947;2.892;2.8769 +;-;-;-;-;-;-;-;-;- + 2007 NaN NaN 315412 NaN 19997 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24384 96.178 NaN 685570 35 0 75789 0.261 + 26151 SPMDIFDMF 9 69 559.7301072714724 1117.4456616097448 2 559.7304077148438 MULTI HCD FTMS 0 0 0 24382 373995.3125 0.7039398302712038 11 -0.219940185546875 2 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 100.37149154755038 0.004254194004462789 1 {[{M(Oxidation (M))|F}D]|MM}[PA]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 73.478 0 0 6.5755 6.5755 93.355 0 0 0 3.9904371307691378 55.53273116069214 3.9904371307691378 38.337359645711324 0 2.3494850021680094 0 1.110924374808178 0 {[{M(Oxidation (M))|F}D]|MM}[PA]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[PA]{I|L}Y[MD]{M(Oxidation (M))|F} 6.5755;3.1447 -;- 473 NaN NaN 187663.5 NaN 19998 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24385 96.181 NaN 433570 35 0 57941 0.261 + 25579 SFSSLFFFL 9 75 547.7801882030061 1093.5458234728121 2 548.7702026367188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SFSSLFFFL_ ENST00000463586.1_1_1:171481117-171481318:+|nuORF 13.50788311687929 0.24365122550260465 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVD{I|L}GC 10 7 35.583 0 0 3.2539 0 0 0 126.092914813392 126.092914813392 9.535854405635344 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVD{I|L}GC 3.2539 - 1118 NaN NaN 152516.9 NaN 19999 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24386 96.185 NaN 530370 35 0 63236 0.261 + 30520 VMPSSFFLL 9 52 520.7779327551017 1039.5413125770033 2 520.7780151367188 MULTI HCD FTMS 0 0 0 24382 148334.8125 0.5011475777973706 2 -0.05561065673828125 4 Unmodified _VMPSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 74.42276476219924 0.007657080072768255 1 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 4 47.211 0 0 4.5416 0 0 414.1927662580094 0 414.1927662580094 0 40.924778212679485 0 0 0 1.579689690656103 0 0.4247425010840047 0 + S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.5416 + + 52 NaN NaN 159496.7 NaN 20000 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24387 96.188 NaN 166070 35 0 10106 0.261 + 23798 RRPPPLAH 8 57 472.2835321808475 NaN 0 472.283447265625 PEAK HCD FTMS 0 0 0 24382 143644.546875 0.9038660084968754 2 -0.05561065673828125 5 Unmodified _RRPPPLAH_ REV__ENST00000440114.1_1_2:198362106-198364543:-|nuORF 2.8892196856762586 0.38822285293237185 1 Q 1 -1 2.2185 0 0 0.23537 0 0 312.19925322712623 499.2755221002563 811.4747753273825 0 0 0 0 0 0 0 0 0 Q 0.23537 - 10 + NaN NaN 114639 NaN 20001 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24388 96.191 NaN 123020 35 0 13970 0.261 + 34764 YQGMCRNACR 10 45 601.253677881634 1200.4928028300678 2 601.25341796875 MULTI HCD FTMS 0 0 0 24382 69183.7890625 0.9023247316469064 1 -0.02948760986328125 6 Unmodified _YQGMCRNACR_ ENSG00000215545|ENST00000400549|DEFB116 3.2813086475875832 0.45793521633868084 1 {I|L}R 2 9 20.969 0 0 1.7467 0 0 913.3107777326187 0 913.3107777326187 0 16.989700043360187 0 0 0 0 0 0 0 {I|L}R 1.7467 - 12 NaN NaN 106107 NaN 20002 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24389 96.195 NaN 119450 35 0 9961.7 0.261 + 20390 NYVKANYLPY 10 45 622.8177910298197 NaN 0 622.8015747070312 PEAK HCD FTMS 0 0 0 24382 15629.2822265625 0.654208646497599 -1 0.02292633056640625 7 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 3.5964929083625545 0.337106189561315 1 PD{M(Oxidation (M))|F}C 4 10 14.412 0 0 1.1589 0 0 147.1018184516875 631.3444307916624 778.4462492433499 0 0 0 0 0 0 0 0 0 PD{M(Oxidation (M))|F}C 1.1589 - 24 + NaN NaN 105381.5 NaN 20003 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24390 96.198 NaN 83180 35 0 9101.2 0.261 -1 0 43 607.3156458681536 606.3083694015536 1 607.3150634765625 MULTI HCD FTMS 0 0 0 24382 40166.6171875 0.6254225074039914 1 -0.02948760986328125 8 NaN NaN 1 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F} 3 -1 8.072 0 0 1.3313 0 0 0 162.1140389174317 162.1140389174317 8.071968632008437 0 0 0 0 0 0 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F} 1.3313 - 6 NaN NaN 100788.7 NaN 20004 4384 24382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24392 96.203 NaN 3632800 35 0 732650 0.327 + 27264 SYPNVFLVF 9 78 543.287036330997 1084.559519728794 2 543.2874755859375 MULTI HCD FTMS 0 0 0 24391 2598587.25 0.5258002224534752 1 -0.026123046875 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 144.35026110057638 1.4798765981150827E-05 1 {[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 9 0 + 86.899 0 0 8.0124 8.0124 93.753 0 0 0 16.478174818886373 59.15209970352346 16.478174818886373 15.268024924119658 0 3.031718309096375 0 2.0189301784845295 0.6549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}V;[NP]V[{I|L}T]VNP[MT];[NP]V[{I|L}T]VGGP[MT] 8.0124;6.6046;2.2305;1.3855 +;-;-;- + 458 NaN NaN 641352.1 NaN 20005 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24393 96.207 NaN 645130 35 0 152820 0.261 + 34698 YPVEDYLDLF 10 47 637.3027381983183 1272.5909234634364 2 637.3029174804688 MULTI HCD FTMS 0 0 0 24391 220238.703125 0.18115165566917585 -4 0.1081390380859375 2 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 41.8396318013385 0.12944265636084 1 Y{I|L}D{I|L}{M(Oxidation (M))|F} 5 5 51.938 0 0 4.0813 0 0 603.2533436505875 0 603.2533436505875 0 47.33410649039925 0 0 0 1.274227503252014 0 0.4247425010840047 0 + Y{I|L}D{I|L}{M(Oxidation (M))|F} 4.0813 + + 30 NaN NaN 191026.1 NaN 20006 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24394 96.211 NaN 435750 35 0 62338 0.261 + 27345 SYRPRDSNE 9 67 562.2605071391865 1122.506461345173 2 562.2601318359375 MULTI HCD FTMS 0 0 0 24391 85592.609375 0.4964110758960847 1 -0.026123046875 3 Unmodified _SYRPRDSNE_ ENSG00000116701|ENST00000367535|NCF2;nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-3|NCF2;nc|ENSG00000116701|P19878-4|NCF2 10.073929032068715 0.27331982688540024 1 {[{M(Oxidation (M))|F}C]|[YS]}[RH][W{M(Oxidation (M))|F}]VE 8 5 + 32.859 0 0 2.9273 2.9273 79.326 0 0 0 6.237577350063788 19.04689632951034 6.237577350063788 0.6895560154146807 0 0.3807196863200844 0 0.6989700043360187 0.23965182871044374 {[{M(Oxidation (M))|F}C]|[YS]}[RH][W{M(Oxidation (M))|F}]VE;{[{M(Oxidation (M))|F}C]|[YS]}{[HG]|PP}V[W{M(Oxidation (M))|F}]VE;{M(Oxidation (M))|F}V[W{M(Oxidation (M))|F}]VEE[PA];{[{M(Oxidation (M))|F}C]|[YS]}[RH][WE]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[HG]|PP}V[WE]V{M(Oxidation (M))|F} 2.9273;2.8659;2.2585;1.2319;1.1705 -;-;-;-;- 97 NaN NaN 154153.3 NaN 20007 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24395 96.214 NaN 382640 35 0 113130 0.261 + -1 SACHRCHWA 9 49 564.2348933677965 1126.455233802393 2 564.2350463867188 MULTI HCD FTMS 0 0 0 24391 60410.36328125 0.29990147596398264 3 -0.068389892578125 4 Carbamidomethyl (C) _SAC(Carbamidomethyl (C))HRCHWA_ REV__ENSG00000105464|ENST00000263269|GRIN2D 1.844237919475145 0.33703635659052655 1 SA 2 -1 13.812 0 0 1.2262 0 0 0 965.3567075131251 965.3567075131251 4.348331157524969 0 0 0 0 0 0 0 0 SA 1.2262 + + 8 + NaN NaN 146516.5 NaN 20008 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24396 96.217 NaN 160630 35 0 14727 0.261 + 22553 QSGSVFQLL 9 42 489.7671121207524 977.5196713083049 2 489.76715087890625 MULTI HCD FTMS 0 0 0 24391 69852.2421875 0.6261749507805086 -2 0.0524139404296875 5 Unmodified _QSGSVFQLL_ ENSG00000161640|ENST00000447370|SIGLEC11 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 25.969 0 0 2.6566 0 0 733.3406615639886 0 733.3406615639886 0 11.264100213633766 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6566 + + 6 NaN NaN 110341.2 NaN 20009 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24397 96.221 NaN 80078 35 0 7937.9 0.261 -1 0 49 607.3156458681536 606.3083694015536 1 607.3170166015625 MULTI HCD FTMS 0 0 0 24391 17160.37109375 0.26719905904289315 2 -0.04222869873046875 6 NaN NaN 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 3 -1 24.437 0 0 4.0305 0 0 0 230.1242928236817 230.1242928236817 16.989700043360187 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 4.0305 - 13 NaN NaN 91587.4 NaN 20010 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24398 96.224 NaN 121390 35 0 37076 0.262 + 20701 PFSFGRHF 8 45 497.7499084472656 NaN 0 497.7499084472656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PFSFGRHF_ REV__ENSG00000197217|ENST00000358689|ENTPD4;REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF;REV__nc|ENSG00000197217|Q9Y227-2|ENTPD4 9.347437153973935 0.38822285293237185 1 {M(Oxidation (M))|F}S 2 -1 7.4743 0 0 0.75233 0 0 515.3013412580094 241.09768091373283 756.3990221717422 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}S 0.75233 + + 8 + NaN NaN 106144.5 NaN 20011 4385 24391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24400 96.229 NaN 527350 35 0 151800 0.327 + 2372 DPFPAAIIL 9 36 478.7762973944334 955.5380418556668 2 478.776123046875 MULTI HCD FTMS 0 0 0 24399 392388.03125 0.6580089862721958 -3 0.0785369873046875 1 Unmodified _DPFPAAIIL_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 34.10243960390752 0.09241788333544565 1 A{I|L}{I|L}{I|L} 4 5 42.933 0 0 4.4931 0 0 527.2365589826187 0 527.2365589826187 0 36.695925227640984 0 0 0 1.25 0 0 0 + A{I|L}{I|L}{I|L} 4.4931 + + 23 NaN NaN 179312.3 NaN 20012 4386 24399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24401 96.233 NaN 911480 35 0 151240 0.261 + 7786 FYPAIADLF 9 70 528.7738688967421 1055.533184860284 2 528.7738647460938 MULTI HCD FTMS 0 0 0 24399 341357.34375 0.43168472928363344 -3 0.0785369873046875 2 Unmodified _FYPAIADLF_ ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion 101.72198241140316 0.004218805956062179 1 {I|L}AD{I|L}{M(Oxidation (M))|F} 5 4 68.315 0 0 6.4721 0 0 478.22171385018333 0 478.22171385018333 0 38.138181262758266 0 0 0 2.3807196863200843 0 0.805462187404089 0 + {I|L}AD{I|L}{M(Oxidation (M))|F} 6.4721 + + 257 + NaN NaN 219306.9 NaN 20013 4386 24399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24402 96.237 NaN 289790 35 0 22348 0.261 + 6822 FPSPFDPLTL 10 60 567.2973832381516 1132.5802135431031 2 567.2980346679688 MULTI HCD FTMS 0 0 0 24399 112631.8046875 0.5155497740100226 2 -0.042266845703125 3 Unmodified _FPSPFDPLTL_ ENSG00000147130|ENST00000314425|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF;nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant 29.081581746732265 0.240155558137004 1 D[{I|L}P]T{I|L} 5 5 35.273 0 0 3.1144 0 0 575.2753366392491 0 575.2753366392491 0 18.59067172228023 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + D[{I|L}P]T{I|L} 3.1144 + + 62 NaN NaN 127372.9 NaN 20014 4386 24399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24403 96.24 NaN 77443 35 0 12692 0.262 + -1 MRYNRWGEVM 10 35 453.20959250377206 NaN 0 453.2097473144531 PEAK HCD FTMS 0 0 0 24399 35443.3984375 0.27189704488227606 32 -0.6699600219726562 4 Oxidation (M) _M(Oxidation (M))RYNRWGEVM_ REV__ENST00000368324.4_1_1:155852837-155852948:+|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93446.6 NaN 20015 4386 24399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24405 96.245 NaN 641290 35 0 119570 0.327 + 6169 FPEIQGFLQL 10 60 596.3242788416504 1190.6340047501008 2 596.324462890625 MULTI HCD FTMS 0 0 0 24404 136513.828125 0.30107364474758275 4 -0.08423614501953125 1 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 61.08992128646608 0.03745793995309655 1 {I|L}QG{M(Oxidation (M))|F}{I|L}Q{I|L} 7 3 71.318 0 0 5.9899 0 0 373.1639576642594 0 373.1639576642594 0 66.25647005197223 0 0 0 2.1549471895720984 0 0 0.7302046884880937 + {I|L}QG{M(Oxidation (M))|F}{I|L}Q{I|L} 5.9899 + + 211 NaN NaN 182983.2 NaN 20016 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24406 96.249 NaN 357420 35 0 38797 0.263 + 22014 QFRIKLFWFI 10 68 466.60798292993655 1396.8021193900097 3 466.6081237792969 MULTI HCD FTMS 0 0 0 24404 191791.265625 0.19988546512843558 33 -0.6955032348632812 2 Unmodified _QFRIKLFWFI_ REV__ENST00000005257.6_1_7:39746581-39746692:+|nuORF 0.6976657623105312 0.47161084886498755 1 Q 1 -1 8.9794 0 0 0.64285 0 0 766.457406110516 499.2768275026328 1265.7342336131487 0 0 0 0 0 0.5 0 0 0 Q 0.64285 + + 9 + NaN NaN 142178.8 NaN 20017 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24407 96.253 NaN 501780 35 0 85008 0.261 -1 SSLVLLLCLTC 11 56 639.8433967924802 1277.6722406517604 2 639.8433227539062 MULTI HCD FTMS 0 0 0 24404 120181.1171875 0.209379738652333 -5 0.1241912841796875 3 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 1 {M(Oxidation (M))|F} 1 -1 7.7642 0 0 0.60768 0 0 612.3790314216704 515.2415865533811 1127.6206179750516 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.60768 - 18 + NaN NaN 165904.9 NaN 20018 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24408 96.256 NaN 151320 35 0 7238.3 0.263 + 11724 KDEKRKLERQR 11 60 495.9588372993481 1484.8546824982443 3 495.958251953125 MULTI HCD FTMS 0 0 0 24404 70595.7890625 0.4692536112685746 -7 0.16327667236328125 4 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 0.4545168274142398 0.41692731010159206 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 104345.8 NaN 20019 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24409 96.26 NaN 161530 35 0 13449 0.261 + 13481 KYPENFFLL 9 52 585.8132802253344 1169.6120075174688 2 585.8135986328125 MULTI HCD FTMS 0 0 0 24404 70365.828125 0.8271390226512085 -1 0.01610565185546875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 10.150570793230772 0.27265765907388223 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 29.285 0 0 2.5038 0 0 631.2983265607437 0 631.2983265607437 0 23.80001899740286 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.5038 + + 39 NaN NaN 106871.8 NaN 20020 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24410 96.263 NaN 118780 35 0 8186.5 0.261 -1 LSMPLLLLW 9 49 551.3211349225364 1100.6277169118728 2 551.3208618164062 MULTI HCD FTMS 0 0 0 24404 14873.8798828125 0.2889516503014984 -1 0.01610565185546875 6 Oxidation (M) _LSM(Oxidation (M))PLLLLW_ ENST00000367204.5_1_1:204095788-204096322:+|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}{I|L}W 3 -1 38.94 0 0 3.538 0 0 670.3664417951187 0 670.3664417951187 0 24.336068845642203 0 0 0 1.4247425010840047 0 0 0 {I|L}{I|L}W 3.538 + + 60 NaN NaN 104765 NaN 20021 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24411 96.266 NaN 85361 35 0 13618 0.263 + 5399 FGTPFACT 8 34 422.18862777851774 842.3627026238355 2 422.1884460449219 MULTI HCD FTMS 0 0 0 24404 12304.3984375 0.06994491763847975 23 -0.48793792724609375 7 Unmodified _FGTPFACT_ REV__LRP4|p.C724F|1|0.12|ENSG00000134569|chr11:46889455-46889455|C/A|missense_variant 0.6903765706972694 0.5409681170271811 1 {I|L} 1 -1 5.4846 0 0 0.65109 0 0 155.0950387240419 571.1619967096311 726.2570354336731 0 0 0 0 0 0 0 0 0 {I|L} 0.65109 - 1 + NaN NaN 93358.4 NaN 20022 4387 24404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24413 96.271 NaN 612970 35 0 125380 0.327 + 35908 YYTDFLITL 9 59 574.7973324597949 1147.5801119863897 2 574.797607421875 MULTI HCD FTMS 0 0 0 24412 410650.25 0.48978777019229064 4 -0.06742095947265625 1 Unmodified _YYTDFLITL_ ENSG00000127990|ENST00000648936|SGCE;ENST00000462731.1_1_7:94229956-94232691:-|nuORF;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE 120.45040980043947 0.0012363446172167195 1 YYTD{M(Oxidation (M))|F}{I|L}{I|L}T{I|L} 9 0 + 94.408 0 0 8.2267 8.2267 97.127 0 0 0 18.741436528314566 63.605925060534574 18.741436528314566 68.92835259938487 0 2 1.3979400086720375 1.5356668758921828 0 + + YYTD{M(Oxidation (M))|F}{I|L}{I|L}T{I|L};[{I|L}T]{I|L}{I|L}[TA][C(Carbamidomethyl (C))D]E{I|L} 8.2267;2.2203 +;- + 139 NaN NaN 175182.1 NaN 20023 4388 24412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24414 96.276 NaN 119450 35 0 7981.4 0.262 + 32763 WRNRQKNKRR 10 52 481.2835464289429 1440.8288098870287 3 481.2832336425781 MULTI HCD FTMS 0 0 0 24412 56526 0.1263327368579925 -28 0.5666656494140625 2 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 1 K 1 9 1.5938 0 0 0.11062 0 0 942.5054894298006 367.1975191705688 1309.7030086003695 0 0 0 0 0 0 0 0 0 + K 0.11062 + + 3 + NaN NaN 105210.7 NaN 20024 4388 24412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24415 96.279 NaN 51593 35 0 6604.5 0.261 + 5594 FLQLCIFPRC 10 33 620.3225153946988 NaN 0 620.3223876953125 PEAK HCD FTMS 0 0 0 24412 15042.6640625 0.264578494767272 1 -0.0193939208984375 3 Unmodified _FLQLCIFPRC_ ENSG00000125676|ENST00000245838|THOC2 1.4819007175156935 0.33891598740166873 1 V 1 10 6.9897 0 0 0.56431 0 0 182.10149943998505 954.4372042291624 1136.5387036691475 0 0 0 0 0 0 0 0 0 V 0.56431 - 1 + NaN NaN 92630.9 NaN 20025 4388 24412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24416 96.282 NaN 124770 35 0 13011 0.261 + -1 DYYEWCLE 8 52 589.229352902283 1176.444152871366 2 589.2288208007812 MULTI HCD FTMS 0 0 0 24412 41452.53125 0.4209508643500127 4 -0.06742095947265625 4 Carbamidomethyl (C) _DYYEWC(Carbamidomethyl (C))LE_ REV__ENSG00000196620|ENST00000338206|UGT2B15 9.347437153973935 0.5250182646323369 1 YYM 3 -1 22.932 0 0 1.9492 0 0 0 716.2457635493535 716.2457635493535 10.713337517843655 0 0 0 0 0 2 0 0 YYM 1.9492 - 44 NaN NaN 95222.5 NaN 20026 4388 24412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24417 96.286 NaN 87005 35 0 10727 0.261 + 14151 LAEYFRLQY 9 32 601.8158489252704 1201.6171449173407 2 602.318359375 MULTI HCD FTMS 0 0 0 24412 30464.333984375 0.5174391660431616 -1 0.02616119384765625 5 Unmodified _LAEYFRLQY_ ENSG00000161973|ENST00000293845|CCDC42;nc|ENSG00000161973|Q96M95-2|CCDC42 3.944395688203298 0.32111559684428237 1 T 1 9 6.9897 0 0 0.58169 0 0 164.07400634487823 933.4640596979124 1097.5380660427907 0 0 0 0 0 0 0 0 0 T 0.58169 - 2 + NaN NaN 86827.9 NaN 20027 4388 24412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24419 96.291 NaN 401910 35 0 82447 0.327 -1 0 52 554.2781484664222 1106.5417439996443 2 554.2781982421875 MULTI HCD FTMS 0 0 0 24418 247211.9375 0.3833786735168516 5 -0.079986572265625 1 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.5267 0 0 842.3915904577989 0 842.3915904577989 0 16.721675119240516 0 0 0 0.8494850021680094 0 0 0 V{M(Oxidation (M))|F} 2.5267 - 19 NaN NaN 158468.3 NaN 20028 4389 24418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24420 96.295 NaN 552170 35 0 88061 0.261 + 15689 LPEPYWIVL 9 53 565.3182281307123 1128.6219033282246 2 565.3182983398438 MULTI HCD FTMS 0 0 0 24418 494479.96875 0.06944978496380037 -10 0.22835540771484375 2 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 1 W{I|L}V{I|L} 4 5 44.24 0 0 3.9198 0 0 599.29594618965 0 599.29594618965 0 31.141303353600094 0 0 0 1.3807196863200843 0 0 0 + W{I|L}V{I|L} 3.9198 + + 48 NaN NaN 171097.8 NaN 20029 4389 24418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24421 96.298 NaN 511360 35 0 79682 0.261 + 26833 SYIFMPFSF 9 74 577.7647026688435 1153.5148524044869 2 577.7648315429688 MULTI HCD FTMS 0 0 0 24418 162646.234375 0.9220558807358441 5 -0.079986572265625 3 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 58.678817012210395 0.019429721296335044 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F} 9 0 + 38.931 0 0 3.3749 3.3749 85.773 0 0 0 4.518083845376502 26.62340288297238 4.518083845376502 12.257724967479863 0 2.1549471895720984 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}E[YV]S{M(Oxidation (M))|F} 3.3749;2.3123 +;- + 124 NaN NaN 165521.3 NaN 20030 4389 24418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24422 96.302 NaN 197560 35 0 25509 0.261 + 19932 NYFPGGVALIW 11 46 618.8242645778104 1235.6339762224206 2 618.8224487304688 MULTI HCD FTMS 0 0 0 24418 70030.2734375 0.15221577569724765 16 -0.328155517578125 4 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 12.240655878213236 0.35042917576941135 1 {I|L}W 2 9 20.969 0 0 1.697 0 0 918.4627552716812 0 918.4627552716812 0 16.457465275951613 0 0 0 0 0 0 0 + {I|L}W 1.697 + + 4 NaN NaN 124380.9 NaN 20031 4389 24418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24423 96.305 NaN 130650 35 0 19415 0.261 + 10198 IFYRDVLMF 9 47 602.3175659179688 NaN 0 602.3175659179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IFYRDVLMF_ ENST00000529428.5_1_16:30291089-30291220:-|nuORF 9.38312468134398 0.24977752951804 1 EY{I|L} 3 7 9.9827 0 0 0.83077 0 0 164.08587650844726 629.3082369440061 793.3941134524534 0 0 0 0 0 0.5 0 0 0 EY{I|L} 0.83077 - 25 + NaN NaN 104698.2 NaN 20032 4389 24418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24425 96.31 NaN 1142600 35 0 160740 0.327 + 22079 QHMERCTSF 9 87 569.7424419446302 1137.4703309560603 2 570.2559204101562 MULTI HCD FTMS 0 0 0 24424 17923.294921875 0.19431066764057103 1 -0.01934814453125 1 Unmodified _QHMERCTSF_ ENSG00000116688|ENST00000235329|MFN2 7.910154910731844 0.2910521888787154 1 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS 8 7 42.861 0 0 3.7681 0 0 0 161.0326758271879 161.0326758271879 -0.7314273971477618 0 -0.7314273971477618 0 0 0 1.3010299956639813 0.3054621874040891 1.1237125054200234 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS 3.7681 - 776 NaN NaN 255632 NaN 20033 4390 24424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24426 96.314 NaN 526240 35 0 132580 0.261 + 984 AYFNFPELL 9 61 557.2843863626786 1112.554219792157 2 557.2847900390625 MULTI HCD FTMS 0 0 0 24424 153172.671875 0.002001769397299795 36 -0.7208404541015625 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 47.748688679222035 0.03472022231463587 1 N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 6 3 49.57 0 0 4.4555 0 0 381.16856581855626 0 381.16856581855626 0 37.88750309660614 0 0 0 1.7614393726401687 0 0 0.805462187404089 + N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 4.4555 + + 117 NaN NaN 161414.2 NaN 20034 4390 24424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24427 96.318 NaN 535720 35 0 42853 0.261 + 26152 SPMDIFDMF 9 70 559.7301072714724 1117.4456616097448 2 559.7305908203125 MULTI HCD FTMS 0 0 0 24424 145605.875 0.2740616566791599 17 -0.35788726806640625 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 78.14939416004806 0.006451203201226903 1 [WE]D{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 3 [WE] + + 58.155 2.2185 0.704 5.2042 5.2042 61.948 0 0 0 0 30.018572025801546 0 0 0 2.2302046884880937 0 0.6747425010840047 0 [WE]D{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2042 - 618 + NaN NaN 166014 NaN 20035 4390 24424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24428 96.321 NaN 89446 35 0 20440 0.261 -1 IYLTFPVAMF 10 38 609.3177453800132 1216.6209378268263 2 609.3189086914062 MULTI HCD FTMS 0 0 0 24424 13876.1513671875 0.1371711640556109 1 -0.01934814453125 4 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 39.957323273324995 0.14577711486213385 1 T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 35.15 0 0 2.8891 0 0 389.2310047834 0 389.2310047834 0 35.149860214307225 0 0 0 1.8935078169319297 0 0.3494850021680094 0 T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8891 + + 16 NaN NaN 92548.4 NaN 20036 4390 24424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24429 96.324 NaN 228320 35 0 24393 0.262 + -1 EVPCVFCR 8 58 505.2320826709505 NaN 0 505.2322692871094 PEAK HCD FTMS 0 0 0 24424 14455.1669921875 0.2299539262286489 1 -0.01934814453125 5 Carbamidomethyl (C) _EVPC(Carbamidomethyl (C))VFCR_ REV__ENSG00000101290|ENST00000460006|CDS2;REV__ENST00000379070.3_1_20:5157275-5170877:+|nuORF;REV__ENST00000468817.5_1_20:5109393-5167506:+|nuORF;REV__nc|ENSG00000101290|O95674-2|CDS2 4.75600775471527 0.38822285293237185 1 {I|L} 1 -1 4.6041 0 0 0.45655 0 0 164.039652547176 728.3107393854124 892.3503919325883 0 0 0 0 0 0 0 0 0 {I|L} 0.45655 - 8 + NaN NaN 116083.2 NaN 20037 4390 24424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24431 96.329 NaN 379180 35 0 81427 0.327 -1 IMPTIFNLI 9 62 539.3045803944284 1076.5946078556567 2 539.3052368164062 MULTI HCD FTMS 0 0 0 24430 139733.671875 0.42373744275275027 2 -0.02194976806640625 1 Oxidation (M) _IM(Oxidation (M))PTIFNLI_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 39.94969957227396 0.06557568441294001 1 {M(Oxidation (M))|F}N{I|L}{I|L} 4 -1 45.745 0 0 4.2491 0 0 571.3041329238531 0 571.3041329238531 0 36.76599703664159 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}N{I|L}{I|L} 4.2491 + + 118 NaN NaN 141408.6 NaN 20038 4391 24430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24432 96.334 NaN 144340 35 0 11830 0.261 + 35944 YYVAVDEAQL 10 46 585.787984138662 1169.5614153441238 2 585.7880859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YYVAVDEAQL_ REV__nc|ENSG00000211598|P06312|IGKV4-1 6.2057823575117 0.44245551207394906 1 M{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 2.1113 0 0 0 775.3390596979124 775.3390596979124 19.20818753952375 0 0 0 0 0 0 0 0 M{I|L}{M(Oxidation (M))|F} 2.1113 - 14 + NaN NaN 102605.5 NaN 20039 4391 24430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24434 96.338 NaN 1254400 35 0 252240 0.327 + 27265 SYPNVFLVF 9 67 543.287036330997 1084.559519728794 2 543.287353515625 MULTI HCD FTMS 0 0 0 24433 714360.3125 0.1445442369596919 8 -0.165985107421875 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 69.10491478415734 0.009377850133389008 1 {[{M(Oxidation (M))|F}C]|[YS]}[NP]V{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 9 0 + 67.47 0 0 6.2209 6.2209 91.564 0 0 0 14.154237220656682 43.288493772929044 14.154237220656682 21.84447197927419 0 2.3494850021680094 0 1.6861818737241734 0 + + {[{M(Oxidation (M))|F}C]|[YS]}[NP]V{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};[{I|L}V]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[DA]|[EG]}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[DA]|[EG]}V{M(Oxidation (M))|F} 6.2209;4.2068;2.3156 +;-;- + 180 NaN NaN 291825.5 NaN 20040 4392 24433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24435 96.343 NaN 1688200 35 0 427050 0.261 + 34699 YPVEDYLDLF 10 56 637.3027381983183 1272.5909234634364 2 637.3027954101562 MULTI HCD FTMS 0 0 0 24433 548403.5 0.4510751316192889 3 -0.0546417236328125 2 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 96.11092074494114 0.0005333825011732249 1 EDY{I|L}D{I|L}{M(Oxidation (M))|F} 7 3 60.482 0 0 4.7526 0 0 359.1850758283219 0 359.1850758283219 0 40.81578960846947 0 0 0 2.004432191740108 0 0.3807196863200844 0 + EDY{I|L}D{I|L}{M(Oxidation (M))|F} 4.7526 + + 128 NaN NaN 339840.4 NaN 20041 4392 24433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24436 96.346 NaN 189830 35 0 33441 0.264 -1 0 57 486.959059115743 1457.855347947429 3 486.9591979980469 MULTI HCD FTMS 0 0 0 24433 13148.033203125 0.07907131850850087 -26 0.47695159912109375 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 107312.9 NaN 20042 4392 24433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24438 96.351 NaN 492770 35 0 126020 0.327 + 2373 DPFPAAIIL 9 37 478.7762973944334 955.5380418556668 2 478.7761535644531 MULTI HCD FTMS 0 0 0 24437 461825.40625 0.7744509087936343 4 -0.0841827392578125 1 Unmodified _DPFPAAIIL_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 26.88365393820708 0.12808753336095696 1 R{I|L}{I|L}{I|L} 4 6 41.938 0 0 4.389 0 0 442.1587391584 0 442.1587391584 0 39.463950151760656 0 0 0 1 0 0 0 R{I|L}{I|L}{I|L} 4.389 - 20 NaN NaN 151485.1 NaN 20043 4393 24437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24439 96.356 NaN 191050 35 0 13147 0.261 + 4607 EYLSYLLNF 9 61 581.2947117812515 1160.574870629303 2 581.2936401367188 MULTI HCD FTMS 0 0 0 24437 67676.34375 0.9329510733829252 1 -0.01935577392578125 2 Unmodified _EYLSYLLNF_ ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 53.832793166522166 0.026208976789938845 1 M{M(Oxidation (M))|F}[DV]Y{I|L}{I|L} 7 6 53.249 0 0 4.5881 0 0 0 276.09909998111567 276.09909998111567 30.532278864828584 0 0 0 0 1.4247425010840047 1.3010299956639813 0.3807196863200844 0 M{M(Oxidation (M))|F}[DV]Y{I|L}{I|L} 4.5881 - 301 + NaN NaN 120694.3 NaN 20044 4393 24437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24440 96.359 NaN 273800 35 0 90221 0.261 + 25119 SAFPLSWAF 9 56 513.2580808931689 1024.5016088531377 2 512.7540893554688 MULTI HCD FTMS 0 0 0 24437 46913.1640625 0.7529070857248465 -4 0.06063079833984375 3 Unmodified _SAFPLSWAF_ ENST00000472564.1_1_13:113960786-113974926:+|nuORF 39.957323273324995 0.06554068735427583 1 WA{M(Oxidation (M))|F} 3 6 35.93 0 0 3.5071 0 0 602.306444236525 0 602.306444236525 0 23.48258770979733 0 0 0 1.274227503252014 0 0 0 + WA{M(Oxidation (M))|F} 3.5071 + + 136 NaN NaN 129021.1 NaN 20045 4393 24437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24441 96.362 NaN 149870 35 0 12668 0.261 + 2429 DPSTPVHIL 9 42 489.7671121207524 977.5196713083049 2 489.7674255371094 MULTI HCD FTMS 0 0 0 24437 93535.0078125 0.8384738568023746 6 -0.11977386474609375 4 Unmodified _DPSTPVHIL_ ENSG00000163257|ENST00000382247|DCAF16 10.823927491677226 0.26684000660059787 1 {I|L}{I|L} 2 7 25.969 0 0 2.6566 0 0 733.3420696463671 0 733.3420696463671 0 -4.476212463643421 -4.476212463643421 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6566 + + 12 NaN NaN 94419.5 NaN 20046 4393 24437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24442 96.366 NaN 92678 35 0 13035 0.261 -1 SILMYITSLF 10 41 602.318603515625 NaN 0 602.318603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _SILM(Oxidation (M))YITSLF_ DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532|DMD 3.2813086475875832 0.33737594360511275 1 EY 2 -1 6.1979 0 0 0.51536 0 0 165.08781308665726 742.3934725761252 907.4812856627825 0 0 0 0 0 0 0 0 0 EY 0.51536 - 5 + NaN NaN 99051 NaN 20047 4393 24437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24444 96.371 NaN 434650 35 0 110730 0.327 + 10976 IYDYAIVLF 9 47 558.8024625497754 1115.5903721663508 2 558.8025512695312 MULTI HCD FTMS 0 0 0 24443 179322.09375 0.4827939604007295 -2 0.03195953369140625 1 Unmodified _IYDYAIVLF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 28.486842064014134 0.11819662193267319 1 {I|L}V{I|L}{M(Oxidation (M))|F} 4 5 47.735 0 0 4.2789 0 0 625.2744162974287 0 625.2744162974287 0 46.141303353600094 0 0 0 1.7302046884880937 0 0 0 + {I|L}V{I|L}{M(Oxidation (M))|F} 4.2789 + + 39 NaN NaN 150363.4 NaN 20048 4394 24443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24445 96.375 NaN 491160 35 0 65743 0.261 + 7787 FYPAIADLF 9 61 528.7738688967421 1055.533184860284 2 528.7738647460938 MULTI HCD FTMS 0 0 0 24443 209231.65625 0.2645969466882093 5 -0.1004180908203125 2 Unmodified _FYPAIADLF_ ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion 67.34385681178166 0.00994769994983633 1 {I|L}AD{I|L}{M(Oxidation (M))|F} 5 4 66.128 0 0 6.2649 0 0 478.2224681628216 0 478.2224681628216 0 40.09704696843414 0 0 0 2.3252574989159953 0 0.7302046884880937 0 + {I|L}AD{I|L}{M(Oxidation (M))|F} 6.2649 + + 259 + NaN NaN 163637.1 NaN 20049 4394 24443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24446 96.378 NaN 248330 35 0 33751 0.261 + -1 KRDLSMQWC 9 42 591.7739371122041 1181.533321291208 2 591.7753295898438 MULTI HCD FTMS 0 0 0 24443 51040.48046875 0.1683140399740021 -5 0.079986572265625 3 Oxidation (M) _KRDLSM(Oxidation (M))QWC_ REV__ENSG00000145293|ENST00000273920|ENOPH1 3.5964929083625545 0.32375295897743744 1 SA 2 -1 17.959 0 0 1.52 0 0 0 1020.4287950631473 1020.4287950631473 6.276362525516532 0 0 0 0 0 0 0 0 SA 1.52 - 9 + NaN NaN 125532.3 NaN 20050 4394 24443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24447 96.382 NaN 137540 35 0 26320 0.264 -1 KKCHQCVETI 10 40 434.8822665355152 NaN 0 434.88238525390625 PEAK HCD FTMS 0 0 0 24443 72915.3984375 0.43690922603554905 42 -0.855804443359375 4 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 1.7422754331352037 0.33869314273211465 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101282.1 NaN 20051 4394 24443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24448 96.385 NaN 108000 35 0 9831.9 0.261 + 14614 LFSKNDNHWI 10 49 425.2145855800598 NaN 0 425.21502685546875 PEAK HCD FTMS 0 0 0 24443 82129.421875 0.8694638041079126 12 -0.277679443359375 5 Unmodified _LFSKNDNHWI_ REV__ENSG00000104879|ENST00000221476|CKM 3.5964929083625545 0.337106189561315 1 Y 1 -1 2.4743 0 0 0.29163 0 0 568.2865492345353 114.03872858218983 682.3252778167251 0 0 0 0 0 0 0 0 0 Y 0.29163 - 1 + NaN NaN 96819.3 NaN 20052 4394 24443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24449 96.388 NaN 148750 35 0 13135 0.261 + 29754 VDVRVGHDLL 10 57 561.8177490234375 NaN 0 561.8177490234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VDVRVGHDLL_ REV__ENSG00000101445|ENST00000299824|PPP1R16B 3.944395688203298 0.33680843299986807 1 {I|L} 1 -1 14.292 0 0 1.2753 0 0 345.19146975837106 659.3184908502561 1004.5099606086271 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L} 1.2753 + + 14 + NaN NaN 99916.5 NaN 20053 4394 24443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24451 96.393 NaN 744810 35 0 132400 0.327 -1 SSLVLLLCLTC 11 65 639.8433967924802 1277.6722406517604 2 639.8439331054688 MULTI HCD FTMS 0 0 0 24450 291377.53125 0.5076384108420692 3 -0.068145751953125 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 1 M 1 -1 8.2268 0 0 0.64389 0 0 463.3328042224064 680.278277000381 1143.6110812227873 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.64389 - 29 + NaN NaN 203258.9 NaN 20054 4395 24450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24452 96.398 NaN 590380 35 0 100680 0.261 + 15687 LPEPVVPWSQ 10 74 576.309158581575 1150.60376422995 2 576.3101196289062 MULTI HCD FTMS 0 0 0 24450 240652.8125 0.2724586473262725 -4 0.06398773193359375 2 Unmodified _LPEPVVPWSQ_ ENSG00000163219|ENST00000409202|ARHGAP25;ENST00000488795.1_1_2:69034406-69043495:+|nuORF;nc|ENSG00000163219|P42331-2|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25 29.84058131909904 0.23356904650364865 1 {I|L}PEPYW{I|L} 7 5 84.188 0 0 7.3169 0 0 0 249.12192712955314 249.12192712955314 58.02623807202458 0 0 0 0 1.8494850021680094 1.3979400086720375 0.4247425010840047 0 {I|L}PEPYW{I|L} 7.3169 - 607 + NaN NaN 174512 NaN 20055 4395 24450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24453 96.401 NaN 186900 35 0 8770.4 0.261 + 11725 KDEKRKLERQR 11 64 495.9588372993481 1484.8546824982443 3 496.29345703125 MULTI HCD FTMS 0 0 0 24450 130850.4375 0.8282109806618565 1 -0.01934051513671875 3 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 0.4545168274142398 0.41692731010159206 1 A 1 11 4.5205 0 0 0.30444 0 0 1202.6874899707036 208.10309778385002 1410.7905877545536 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.30444 - 8 + NaN NaN 121402.1 NaN 20056 4395 24450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24454 96.404 NaN 461340 35 0 69769 0.261 + 35003 YSWSLYLVL 9 65 572.3080335661306 1142.601514199061 2 572.3084106445312 MULTI HCD FTMS 0 0 0 24450 140814.46875 0.3170945565421442 -4 0.06398773193359375 4 Unmodified _YSWSLYLVL_ REV__ENSG00000103089|ENST00000219368|FA2H 16.942295170755138 0.21397866736869717 1 {I|L}V{I|L} 3 -1 35.005 0 0 3.0636 0 0 799.3543220165941 0 799.3543220165941 0 28.015384402724592 0 0 0 0.8807196863200843 0 0 0 {I|L}V{I|L} 3.0636 + + 62 NaN NaN 148041.3 NaN 20057 4395 24450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24455 96.408 NaN 144940 35 0 12419 0.261 + 13482 KYPENFFLL 9 51 585.8131813777213 1169.6118098222425 2 585.8126831054688 MULTI HCD FTMS 0 0 0 24450 39219.609375 0.40867981078050925 1 -0.01934051513671875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.1930734562688509 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 34.693 0 0 2.9662 0 0 778.3664417951187 0 778.3664417951187 0 18.239087409443187 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.9662 + + 40 NaN NaN 104559.2 NaN 20058 4395 24450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24457 96.413 NaN 177360 35 0 10119 0.327 + 32764 WRNRQKNKRR 10 56 481.2835464289429 1440.8288098870287 3 481.28369140625 MULTI HCD FTMS 0 0 0 24456 107732.6015625 0.24077688858617743 -20 0.40238189697265625 1 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 1 V 1 10 6.9897 0 0 0.48512 0 0 806.4637719005037 532.2821749322874 1338.745946832791 0 0 0 0 0 0 0 0 0 V 0.48512 - 7 + NaN NaN 109847.6 NaN 20059 4396 24456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24458 96.417 NaN 322810 35 0 45173 0.261 -1 SWYLHFCGL 9 53 591.7739371122041 1181.533321291208 2 591.7737426757812 MULTI HCD FTMS 0 0 0 24456 175099.921875 0.5774196280922111 -3 0.06137847900390625 2 Carbamidomethyl (C) _SWYLHFC(Carbamidomethyl (C))GL_ ENST00000591073.1_1_19:37935822-37959899:-|nuORF;ENST00000591710.5_1_19:37945970-37958237:-|nuORF 4.3292370932331545 0.3181982124262546 1 SA 2 -1 17.959 0 0 1.52 0 0 0 1020.4286868348562 1020.4286868348562 9.54242509439325 0 0 0 0 0 0 0 0 SA 1.52 - 18 + NaN NaN 131049.5 NaN 20060 4396 24456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24459 96.421 NaN 263530 35 0 30858 0.261 + 4608 EYLSYLLNF 9 69 581.2947117812515 1160.574870629303 2 581.7960205078125 MULTI HCD FTMS 0 0 0 24456 44294.23046875 0.5334518758633239 1 -0.02280426025390625 3 Unmodified _EYLSYLLNF_ ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 47.594388314883695 0.03493607795751234 1 MV{[{M(Oxidation (M))|F}D]|MM}Y{I|L}{I|L} 7 6 53.39 0 0 4.6003 0 0 0 276.0992830865844 276.0992830865844 35.43137271814366 0 0 0 0 1.5114393726401687 0 0.805462187404089 0 MV{[{M(Oxidation (M))|F}D]|MM}Y{I|L}{I|L} 4.6003 - 333 + NaN NaN 123901.8 NaN 20061 4396 24456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24460 96.424 NaN 370450 35 0 134220 0.261 + 6170 FPEIQGFLQL 10 51 596.3242788416504 1190.6340047501008 2 596.3245239257812 MULTI HCD FTMS 0 0 0 24456 125193.3828125 0.2761070331067515 13 -0.30086517333984375 4 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 19.625955294349634 0.3275374527965692 1 QG{M(Oxidation (M))|F}{I|L}Q{I|L} 6 4 44.742 0 0 3.7578 0 0 486.24901015449376 0 486.24901015449376 0 39.25759390300961 0 0 0 1.0752574989159953 0 0 0 + QG{M(Oxidation (M))|F}{I|L}Q{I|L} 3.7578 + + 50 NaN NaN 136785 NaN 20062 4396 24456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24461 96.427 NaN 330030 35 0 29164 0.262 + 2063 DEKCQKLF 8 52 505.7523328923951 NaN 0 505.75225830078125 PEAK HCD FTMS 0 0 0 24456 81427.4609375 1 0 0 5 Unmodified _DEKCQKLF_ tr|U7SLT6|U7SLT6_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01887PE=3SV=1 11.640296217721598 0.38822285293237185 1 {I|L}EV 3 7 14.693 0 0 1.4555 0 0 130.97832491967193 534.2936096369363 665.2719345566081 0 0 0 0 0 0 0 0 0 {I|L}EV 1.4555 - 18 + NaN NaN 132158.6 NaN 20063 4396 24456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24462 96.431 NaN 865270 35 0 317490 0.261 + 30396 VLLWFFSS 8 64 499.7709292537449 997.5273055742898 2 499.7716369628906 MULTI HCD FTMS 0 0 0 24456 54577.984375 0.4021554806403603 -3 0.06137847900390625 6 Unmodified _VLLWFFSS_ REV__nc|ENSG00000133135|Q8TEB7-2|RNF128 4.75600775471527 0.5349361699807423 1 V{I|L}{I|L} 3 -1 23.812 0 0 2.3871 0 0 0 669.2657564752561 669.2657564752561 9.119543704721593 0 0 0 0 0 0 0 0 V{I|L}{I|L} 2.3871 + + 11 + NaN NaN 229321.7 NaN 20064 4396 24456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24464 96.435 NaN 4030600 35 0 771170 0.327 + 15690 LPEPYWIVL 9 71 565.3182281307123 1128.6219033282246 2 565.318603515625 MULTI HCD FTMS 0 0 0 24463 3461983.5 0.48623609613756474 -2 0.042144775390625 1 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 1 [EP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L} 9 2 + 49.67 0 0 4.401 4.401 82.366 0 0 0 2.7321943351905986 41.571450803909755 2.7321943351905986 4.2298741536507265 0 1.9247425010840047 0 0 0 [EP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L};EP{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L};[EP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}WV{I|L}{I|L} 4.401;4.0262;3.3386 -;-;- 186 NaN NaN 705924.2 NaN 20065 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24465 96.44 NaN 216220 35 0 23805 0.261 + 29311 TYNIFAITF 9 45 545.2843338321163 1088.5541147310325 2 545.2847290039062 MULTI HCD FTMS 0 0 0 24463 137075.90625 0.08995115797610741 24 -0.5278701782226562 2 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 55.50274090549119 0.023872834264864425 1 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 2 + 72.457 0 0 6.6563 6.6563 94.523 0 0 0 8.920365321768529 65.46774379777631 8.920365321768529 72.4574438411365 0 2.3807196863200843 0 0.8494850021680094 0.7302046884880937 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 6.6563 - 202 NaN NaN 114314.6 NaN 20066 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24466 96.443 NaN 483040 35 0 73661 0.261 + 15472 LPDLVVEIL 9 54 505.8101006529909 1009.6056483727818 2 505.8099365234375 MULTI HCD FTMS 0 0 0 24463 90850.3828125 0.417968343401988 -7 0.12548065185546875 3 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 30.636539890814138 0.10832830463492794 1 VE{I|L}{I|L} 4 5 46.938 0 0 4.6492 0 0 537.3163048332301 0 537.3163048332301 0 29.948500216800937 0 0 0 1.5 0 0 0 + VE{I|L}{I|L} 4.6492 + + 19 NaN NaN 151379 NaN 20067 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24467 96.447 NaN 93728 35 0 48960 0.262 -1 0 28 409.2014009082103 408.1941244416103 1 409.2016296386719 MULTI HCD FTMS 0 0 0 24463 64385.04296875 0.3488625848209183 -19 0.39934539794921875 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89870.1 NaN 20068 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24468 96.45 NaN 176120 35 0 30428 0.261 + 14433 LEPYYAVIPC 10 39 584.290991888069 1166.567430842938 2 584.7930297851562 MULTI HCD FTMS 0 0 0 24463 78591.8984375 1 0 0 5 Unmodified _LEPYYAVIPC_ REV__tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1 6.723162845929126 0.4397169348982109 1 {I|L}V 2 -1 20.969 0 0 1.7975 0 0 0 951.3931343275658 951.3931343275658 11.365006360318688 0 0 0 0 0 0 0 0 {I|L}V 1.7975 - 5 + NaN NaN 116544 NaN 20069 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24469 96.453 NaN 337540 35 0 65879 0.261 + 14819 LITDILDTF 9 44 525.7894307141229 1049.5643084950457 2 525.7896728515625 MULTI HCD FTMS 0 0 0 24463 68352.984375 0.09275679197983934 -7 0.12548065185546875 6 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 61.357469665136826 0.01568246967499496 1 {[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}{I|L}DT{M(Oxidation (M))|F} 9 3 {[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L} + + 56.67 4.7616 0.85744 5.3994 5.3994 62.266 0 0 0 0 40.47228775315752 0 0 0 1.9247425010840047 0 0.8494850021680094 0 {[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}{I|L}DT{M(Oxidation (M))|F} 5.3994 - 57 + NaN NaN 135329.3 NaN 20070 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24470 96.457 NaN 96767 35 0 15592 0.261 -1 0 44 554.2781484664222 1106.5417439996443 2 554.2785034179688 MULTI HCD FTMS 0 0 0 24463 44698.98828125 0.06931962512858393 13 -0.29756927490234375 7 NaN NaN 1 G 1 -1 9.732 0 0 0.87949 0 0 193.08547455576246 853.4221587491967 1046.5076333049592 0 0 0 0 0 0.4247425010840047 0 0 0 G 0.87949 - 6 + NaN NaN 97652.9 NaN 20071 4397 24463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24472 96.461 NaN 274050 35 0 70497 0.327 + 11281 IYLTFPVAMF 10 53 609.3177984242096 1216.6210439152192 2 609.317626953125 MULTI HCD FTMS 0 0 0 24471 72729.3359375 0.07181593154663693 -11 0.21636962890625 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 100.37149154755038 0.000206371386929769 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 81.828 0 0 6.7258 6.7258 93.831 0 0 0 3.7751372576825304 71.37009080640347 3.7751372576825304 44.13425655227236 0 2.7302046884880937 0 1.610924374808178 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7258;3.0982 +;- + 128 NaN NaN 126136.4 NaN 20072 4398 24471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24473 96.466 NaN 83228 35 0 14713 0.264 + -1 CFMDMIDLLAQ 11 36 452.8703899131848 NaN 0 452.8810729980469 PEAK HCD FTMS 0 0 0 24471 15310.5087890625 0.22743445119138347 -19 0.399169921875 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FMDMIDLLAQ_ REV__ENSG00000008838|ENST00000394128|MED24;REV__nc|ENSG00000008838|O75448-2|MED24 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92435.5 NaN 20073 4398 24471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24475 96.471 NaN 496210 35 0 90524 0.327 + 34880 YSEKPDVVF 9 56 542.2714411910683 1082.5283294489366 2 543.2870483398438 MULTI HCD FTMS 0 0 0 24474 9932.3857421875 0.10050071291853283 -5 0.1004180908203125 1 Unmodified _YSEKPDVVF_ REV__ENSG00000264424|ENST00000255381|MYH4;REV__MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant 16.942295170755138 0.21397866736869717 1 YV{[DA]|[EG]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}V{M(Oxidation (M))|F} 9 -1 + 39.142 0 0 3.6158 3.6158 88.747 0 0 0 4.1934746919729875 8.708924626932706 4.1934746919729875 39.141974908773925 0 0 0 0.4247425010840047 0 YV{[DA]|[EG]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}V{M(Oxidation (M))|F} 3.6158 - 136 + NaN NaN 172925.4 NaN 20074 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24476 96.476 NaN 192910 35 0 38915 0.271 + 32732 WPVTDLLL 8 40 478.7762973944334 955.5380418556668 2 478.7762756347656 MULTI HCD FTMS 0 0 0 24474 133268.015625 0.22348171931891309 10 -0.24246978759765625 2 Unmodified _WPVTDLLL_ REV__ENSG00000124155|ENST00000279036|PIGT;REV__nc|ENSG00000124155|Q969N2-2|PIGT;REV__nc|ENSG00000124155|Q969N2-4|PIGT;REV__nc|ENSG00000124155|Q969N2-5|PIGT 13.50788311687929 0.4944073034352369 1 {I|L}{I|L}{I|L} 3 -1 35.005 0 0 3.6634 0 0 598.2756214826187 0 598.2756214826187 0 35.00508444608478 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}{I|L} 3.6634 + + 12 NaN NaN 125676 NaN 20075 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24477 96.48 NaN 379280 35 0 89552 0.261 + 939 AYEDWFITL 9 63 579.2792091310909 1156.5438653289816 2 579.2793579101562 MULTI HCD FTMS 0 0 0 24474 259654.0625 1 0 0 3 Unmodified _AYEDWFITL_ ENSG00000081923|ENST00000648908|ATP8B1 34.40172386719151 0.0910440009062557 1 W{M(Oxidation (M))|F}{I|L}T{I|L} 5 4 51.599 0 0 4.4615 0 0 478.17186171699376 0 478.17186171699376 0 37.173917382120706 0 0 0 1.7134679910804405 0 0 0 + W{M(Oxidation (M))|F}{I|L}T{I|L} 4.4615 + + 63 NaN NaN 142529 NaN 20076 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24478 96.483 NaN 144200 35 0 11615 0.261 + 35014 YTEDEWQKEWN 11 50 509.88569289506205 NaN 0 509.8857116699219 PEAK HCD FTMS 0 0 0 24474 70928.046875 0.8223812814118147 -2 0.03559112548828125 4 Unmodified _YTEDEWQKEWN_ ENSG00000264522|ENST00000581312|OTUD7B;nc|ENSG00000264522|Q6GQQ9-2|OTUD7B 0.09484139111097674 0.34185110575506755 1 {I|L}{I|L}{I|L}{I|L}{I|L} 5 11 25.411 0 0 2.4968 0 0 227.1513163547741 222.1601503961547 449.31146675092884 0 0 0 0 0 1.9916440611282626 0 0 0 {I|L}{I|L}{I|L}{I|L}{I|L} 2.4968 - 36 + NaN NaN 121374.1 NaN 20077 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24479 96.486 NaN 148600 35 0 7727 0.261 + 5581 FLNRRRRRER 10 61 486.959059115743 1457.855347947429 3 487.2937927246094 MULTI HCD FTMS 0 0 0 24474 33447.90625 0.18658438124378374 -17 0.35015106201171875 5 Unmodified _FLNRRRRRER_ ENSG00000150637|ENST00000582621|CD226 0.6976657623105312 0.47161084886498755 1 S 1 10 1.9897 0 0 0.13648 0 0 999.6708519530915 368.1240633600219 1367.7949153131135 0 0 0 0 0 0 0 0 0 S 0.13648 - 9 + NaN NaN 121251.3 NaN 20078 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24480 96.49 NaN 327550 35 0 51776 0.261 + 32539 WHRLGLLF 8 64 521.3041419718055 NaN 0 521.3036499023438 PEAK HCD FTMS 0 0 0 24474 29664.408203125 0.4072518787585494 3 -0.069244384765625 6 Unmodified _WHRLGLLF_ REV__ENST00000216044.9_1_22:39127397-39127706:+|nuORF 10.183394434864962 0.38822285293237185 1 {I|L}VQS 4 -1 9.6278 0 0 0.92522 0 0 167.1327457582609 443.1929172619445 610.3256630202054 0 0 0 0 0 0 0 0 0.3252574989159953 {I|L}VQS 0.92522 - 82 + NaN NaN 133085.5 NaN 20079 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24481 96.493 NaN 52698 35 0 3840.1 0.261 + 16752 LYDEDLKSKE 10 40 620.3082668408425 1238.601980748485 2 621.2950439453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LYDEDLKSKE_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant 3.5964929083625545 0.45626689593999237 1 [Y{I|L}][YV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}M 7 -1 32.976 0 0 2.6623 0 0 0 272.1272512237485 272.1272512237485 24.39220077906249 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}][YV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}M 2.6623 - 16 NaN NaN 96783.9 NaN 20080 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24482 96.496 NaN 86518 35 0 7052.8 0.264 -1 NIPRLFCLRII 11 54 472.2838411813653 1413.829694144296 3 472.61822509765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _NIPRLFC(Carbamidomethyl (C))LRII_ tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1 0.5059551277355931 0.4167017191902429 1 [EP]V 3 -1 5.0617 0 0 0.35801 0 0 0 1085.6433592656429 1085.6433592656429 0.45757490560674974 0 0 0 0 0 0 0 0 [EP]V 0.35801 - 12 NaN NaN 100413.9 NaN 20081 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24483 96.5 NaN 72975 35 0 11201 0.261 -1 CKWCCRQV 8 37 598.7610080324431 NaN 0 598.760009765625 PEAK HCD FTMS 0 0 0 24474 37966.9921875 1 0 0 9 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))KWC(Carbamidomethyl (C))C(Carbamidomethyl (C))RQV_ ENST00000420679.1_1_2:139308594-139326647:+|nuORF 0.6903765706972694 0.38822285293237185 1 M 1 -1 3.9794 0 0 0.33286 0 0 634.1393733873487 427.30198084049067 1061.4413542278394 0 0 0 0 0 0 0 0 0 M 0.33286 - 4 + NaN NaN 96033.8 NaN 20082 4399 24474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24485 96.505 NaN 446140 35 0 123370 0.327 + 34700 YPVEDYLDLF 10 40 637.3027381983183 1272.5909234634364 2 637.3029174804688 MULTI HCD FTMS 0 0 0 24484 79766.78125 0.06561010524402339 11 -0.25463104248046875 1 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 29.081581746732265 0.240155558137004 1 Y{I|L}D{I|L}{M(Oxidation (M))|F} 5 5 49.196 0 0 3.8658 0 0 603.2502308576187 0 603.2502308576187 0 44.59183145787911 0 0 0 1 0 0.4247425010840047 0 + Y{I|L}D{I|L}{M(Oxidation (M))|F} 3.8658 + + 22 NaN NaN 149266.9 NaN 20083 4400 24484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24486 96.509 NaN 248810 35 0 50113 0.262 -1 IMPTIFNLI 9 56 539.3045803944284 1076.5946078556567 2 539.3046875 MULTI HCD FTMS 0 0 0 24484 67768.4609375 0.20550547303039515 11 -0.25463104248046875 2 Oxidation (M) _IM(Oxidation (M))PTIFNLI_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 17.11289562659939 0.2125047172822487 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}N{I|L}{I|L} 6 -1 48.008 0 0 4.4592 0 0 325.199998924025 0 325.199998924025 0 32.52320417602277 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}N{I|L}{I|L} 4.4592 - 76 NaN NaN 121777.7 NaN 20084 4400 24484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24487 96.513 NaN 333210 35 0 35119 0.261 + 34760 YQELQVLF 8 75 520.2765431289445 1038.5385333246888 2 521.8055419921875 MULTI HCD FTMS 0 0 0 24484 6640.02880859375 0.08683490115053293 -4 0.09200286865234375 3 Unmodified _YQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF;VPS37B|p.Y87D|1|0.24|ENSG00000139722|chr12:122870914-122870914|A/C|missense_variant 21.74664581756881 0.4337896562907935 1 V{I|L}{M(Oxidation (M))|F} 3 5 22.893 0 0 2.2043 0 0 661.3074980237108 0 661.3074980237108 0 0.9543872825297939 0 0 0 0.6861818737241735 0 0 0 + V{I|L}{M(Oxidation (M))|F} 2.2043 + + 321 + NaN NaN 144920.8 NaN 20085 4400 24484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24488 96.516 NaN 68819 35 0 8999.5 0.261 + 30454 VLPYYLTI 8 43 491.28651761774677 980.5584823022936 2 491.2864685058594 MULTI HCD FTMS 0 0 0 24484 49590.90234375 0.9070437535134245 -1 0.03360748291015625 4 Unmodified _VLPYYLTI_ ENST00000568578.5_1_X:135956303-135956645:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 96635.5 NaN 20086 4400 24484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24489 96.519 NaN 87618 35 0 15633 0.261 -1 PNCNVVPH 8 42 468.72349258620767 NaN 0 468.7236328125 PEAK HCD FTMS 0 0 0 24484 35800.1015625 0.8622537379150469 3 -0.06182098388671875 5 Carbamidomethyl (C) _PNC(Carbamidomethyl (C))NVVPH_ ENSG00000144744|ENST00000361055|UBA3;nc|ENSG00000144744|Q8TBC4-2|UBA3 2.577480529830294 0.38822285293237185 1 Q 1 -1 3.0989 0 0 0.33128 0 0 556.2247428855029 248.1262606256469 804.3510035111498 0 0 0 0 0 0 0 0 0 Q 0.33128 - 1 + NaN NaN 114540.7 NaN 20087 4400 24484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24490 96.523 NaN 71635 35 0 5150.3 0.261 + 20989 PLLLWPLPF 9 45 548.3335571289062 NaN 0 548.3335571289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _PLLLWPLPF_ ENST00000334370.8_1_19:42840288-42840357:+|nuORF 0.6014990680409731 0.29233206172879045 1 {I|L} 1 8 6.9897 0 0 0.63853 0 0 131.25040255821324 847.2937716119749 978.5441741701882 0 0 0 0 0 0 0 0 0 + {I|L} 0.63853 + + 5 + NaN NaN 106550.1 NaN 20088 4400 24484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24492 96.527 NaN 493080 35 0 115390 0.327 + 10977 IYDYAIVLF 9 54 558.8024625497754 1115.5903721663508 2 558.8026733398438 MULTI HCD FTMS 0 0 0 24491 76851.1796875 0.2069086113533973 5 -0.1208343505859375 1 Unmodified _IYDYAIVLF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 36.04419817259434 0.08350412372117409 1 {I|L}V{I|L}{M(Oxidation (M))|F} 4 5 47.735 0 0 4.2789 0 0 625.2765688594093 0 625.2765688594093 0 42.250547101681875 0 0 0 1.7302046884880937 0 0 0 + {I|L}V{I|L}{M(Oxidation (M))|F} 4.2789 + + 43 NaN NaN 156306.7 NaN 20089 4401 24491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24493 96.532 NaN 373330 35 0 82942 0.261 + 26076 SPGECVYRF 9 61 529.2423912430816 1056.470229552963 2 529.2421875 MULTI HCD FTMS 0 0 0 24491 78820.2421875 0.5517032657318963 -3 0.06601715087890625 2 Unmodified _SPGECVYRF_ REV__ENSG00000109320|ENST00000226574|NFKB1;REV__nc|ENSG00000109320|P19838|NFKB1 6.723162845929126 0.3000504726104499 1 S[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]A{I|L} 5 -1 16.823 0 0 1.5923 0 0 0 475.18720422916255 475.18720422916255 2.2184874961635614 0 0 0 0 0 0 0 0 S[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]A{I|L} 1.5923 - 53 + NaN NaN 136125.7 NaN 20090 4401 24491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24494 96.535 NaN 180440 35 0 13113 0.261 + 10947 IYDFIGEFM 9 61 567.7622422745276 1133.509931615855 2 567.76220703125 MULTI HCD FTMS 0 0 0 24491 49816.98046875 1 0 0 3 Unmodified _IYDFIGEFM_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 19.256988751693697 0.19398022840297344 1 [YT]HH{I|L}W{M(Oxidation (M))|F}M 8 5 + 51.833 0 0 4.5728 4.5728 88.474 0 0 0 13.300756084811809 33.13608784304506 13.300756084811809 19.26213785839081 0 1.5 1.5228787452803376 0 0 [YT]HH{I|L}W{M(Oxidation (M))|F}M;[YT]HHG{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}M;{[CT]|[{M(Oxidation (M))|F}G]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}M;{[{M(Oxidation (M))|F}C]|[YS]}[MT]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}M;[EC]{I|L}H{I|L}HH[{M(Oxidation (M))|F}V];[YE][WY]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T] 4.5728;2.8734;2.3768;2.2478;1.4646;0.54203 -;-;-;-;-;- 367 NaN NaN 111168.5 NaN 20091 4401 24491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24496 96.54 NaN 1035000 35 0 175860 0.327 + 15688 LPEPVVPWSQ 10 80 576.309158581575 1150.60376422995 2 576.3093872070312 MULTI HCD FTMS 0 0 0 24495 514670.09375 0.582691372295559 3 -0.0785064697265625 1 Unmodified _LPEPVVPWSQ_ ENSG00000163219|ENST00000409202|ARHGAP25;ENST00000488795.1_1_2:69034406-69043495:+|nuORF;nc|ENSG00000163219|P42331-2|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25 36.506200033944 0.17572556831573002 1 {I|L}PEPYW{I|L} 7 5 77.274 0 0 6.7159 0 0 0 249.12203394107658 249.12203394107658 39.73274804785078 0 0 0 0 1.9361818737241734 1.3979400086720375 0.4247425010840047 0 {I|L}PEPYW{I|L} 6.7159 - 1649 + NaN NaN 247241.6 NaN 20092 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24497 96.545 NaN 354320 35 0 63302 0.261 + 34784 YQTMYILVL 9 58 572.3080335661306 1142.601514199061 2 572.307861328125 MULTI HCD FTMS 0 0 0 24495 242185.265625 0.5453674617822308 3 -0.0785064697265625 2 Unmodified _YQTMYILVL_ DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant 19.256988751693697 0.19398022840297344 1 {I|L}V{I|L} 3 6 35.005 0 0 3.0636 0 0 799.3547230451187 0 799.3547230451187 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0 + {I|L}V{I|L} 3.0636 + + 19 NaN NaN 130214.2 NaN 20093 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24498 96.548 NaN 394840 35 0 48059 0.261 + 25180 SANFSGRMPCI 11 58 591.7739371122041 1181.533321291208 2 591.7744750976562 MULTI HCD FTMS 0 0 0 24495 186743.46875 0.6158160615928285 3 -0.0785064697265625 3 Unmodified _SANFSGRMPCI_ ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L 4.189502756095605 0.4005469306127019 1 SA 2 9 16.198 0 0 1.3709 0 0 0 1020.4293140794065 1020.4293140794065 5.3959062302381255 0 0 0 0 0 0 0 0 + SA 1.3709 + + 9 + NaN NaN 156388.2 NaN 20094 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24499 96.552 NaN 231810 35 0 13679 0.263 + 22678 QWSRLRRRAGR 11 64 481.2835464289429 1440.8288098870287 3 481.2834167480469 MULTI HCD FTMS 0 0 0 24495 117385.5703125 0.2623507830947607 -14 0.26904296875 4 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 2.4347853303010236 0.4082425251555256 1 ES 2 -1 14.464 0 0 1.0039 0 0 678.4053608455038 543.3026217096311 1221.707982555135 0 0 0 0 0 0.5 0 0 0 ES 1.0039 - 9 + NaN NaN 131480.1 NaN 20095 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24500 96.555 NaN 373720 35 0 93384 0.261 + 985 AYFNFPELL 9 49 557.2843863626786 1112.554219792157 2 557.2853393554688 MULTI HCD FTMS 0 0 0 24495 140160.828125 0.0018317213704399347 48 -1.0077438354492188 5 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 47.748688679222035 0.03472022231463587 1 NV[PA]N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 10 4 + 44.855 0 0 4.0317 4.0317 89.405 0 0 0 30.875912339897198 1.4203653217685286 1.4203653217685286 44.85531242661757 0 2.1237125054200234 0 0.3494850021680094 0 NV[PA]N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 4.0317 - 81 + NaN NaN 149747.1 NaN 20096 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24501 96.558 NaN 324450 35 0 26139 0.261 + 26153 SPMDIFDMF 9 54 559.7305171616102 1117.4464813900204 2 559.7308349609375 MULTI HCD FTMS 0 0 0 24495 125506.453125 0.5654919653862368 -14 0.26904296875 6 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 52.268347100219714 0.028397529699942435 1 {[{M(Oxidation (M))|F}D]|MM}PA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 61.213 0 0 5.4779 5.4779 88.28 0 0 0 4.926609503452184 44.100103527040844 4.926609503452184 10.969100130080562 0 2.2614393726401687 0 0.3807196863200844 0 {[{M(Oxidation (M))|F}D]|MM}PA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[DP]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PA{I|L}Y[MD]{M(Oxidation (M))|F};{[CP]|[EA]}[{M(Oxidation (M))|F}V]P{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[DP]{I|L}Y[MD]{M(Oxidation (M))|F} 5.4779;4.4963;3.2702;2.6059;2.2886 -;-;-;-;- 275 NaN NaN 131890.8 NaN 20097 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24502 96.562 NaN 102240 35 0 13424 0.262 -1 0 38 472.2750631807091 471.2677867141091 1 472.2824401855469 MULTI HCD FTMS 0 0 0 24495 34300.2265625 0.5794698197655396 -2 0.03563690185546875 7 NaN NaN 1 A 1 -1 4.6041 0 0 0.97696 0 0 76.12094941117785 321.08237634830317 397.203325759481 0 0 0 0 0 0 0 0 0 A 0.97696 - 1 + NaN NaN 99102.9 NaN 20098 4402 24495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24504 96.567 NaN 1015700 35 0 95663 0.326 + 2945 DYTTWTALL 9 96 542.2714411910683 1082.5283294489366 2 542.2716674804688 MULTI HCD FTMS 0 0 0 24503 111184.671875 0.24976739030383663 -1 0.02618408203125 1 Unmodified _DYTTWTALL_ ENSG00000076382|ENST00000321765|SPAG5 141.82661023413823 1.746659319327287E-05 1 {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L} 9 0 + 92.308 0 0 8.5271 8.5271 94.554 0 0 0 14.801594589017384 16.478174818886373 14.801594589017384 14.801594589017384 0 2.4361818737241734 1.3979400086720375 1.7803695511246982 0 + + {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ETWTA{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}E]{[DA]|[EG]}TA{I|L}{I|L};E{[{M(Oxidation (M))|F}C]|[YS]}TWTA{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TT{[QV]|[N{I|L}]|[RA]|[KV]}M{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[QP][YE]A{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TT{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}P{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[HN][C(Carbamidomethyl (C))K]A{I|L}{I|L};[YV]{I|L}{[ET]|[MV]}[WC(Carbamidomethyl (C))]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{I|L}[WC(Carbamidomethyl (C))]{I|L} 8.5271;7.1598;4.9941;4.4404;3.4121;3.4052;3.1777;2.9474;1.9066;1.8972 +;-;-;-;-;-;-;-;-;- + 1546 NaN NaN 239253.4 NaN 20099 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24505 96.571 NaN 148600 35 0 31393 0.261 + 2446 DPYFTPIPVL 10 33 581.3129418366632 1160.6113307401263 2 581.8148803710938 MULTI HCD FTMS 0 0 0 24503 40603.9453125 0.2669321176556631 4 -0.10138702392578125 2 Unmodified _DPYFTPIPVL_ ENSG00000103599|ENST00000335894|IQCH 19.256988751693697 0.33098864134661865 1 V{I|L} 2 8 25.969 0 0 2.2375 0 0 930.4472289268955 0 930.4472289268955 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.2375 + + 21 NaN NaN 109811.4 NaN 20100 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24506 96.574 NaN 115350 35 0 8097.9 0.262 + 11726 KDEKRKLERQR 11 54 495.9588372993481 1484.8546824982443 3 495.9587097167969 MULTI HCD FTMS 0 0 0 24503 85167.921875 0.5661152801720423 9 -0.21233367919921875 3 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 0.4545168274142398 0.41692731010159206 1 E 1 10 2.4743 0 0 0.16663 0 0 1008.6271358835623 344.16587244205317 1352.7930083256156 0 0 0 0 0 0 0 0 0 + E 0.16663 + + 2 + NaN NaN 90593.2 NaN 20101 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24507 96.578 NaN 252890 35 0 59236 0.261 + 1707 CHAQLTGFPTD 11 43 595.2712441854796 NaN 0 595.271240234375 PEAK HCD FTMS 0 0 0 24503 34104.24609375 0.312864760675858 4 -0.10138702392578125 4 Unmodified _CHAQLTGFPTD_ REV__ENST00000586299.1_1_17:76674036-76674234:-|nuORF 5.296884461304476 0.3270944076746277 1 M 1 -1 6.9897 0 0 0.5881 0 0 630.1794990137342 424.28525720767817 1054.4647562214125 0 0 0 0 0 0 0 0 0 M 0.5881 - 3 + NaN NaN 126489.3 NaN 20102 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24508 96.581 NaN 111550 35 0 8663.3 0.261 + 13483 KYPENFFLL 9 43 585.8131813777213 1169.6118098222425 2 585.8128051757812 MULTI HCD FTMS 0 0 0 24503 31197.287109375 0.3250848643294167 9 -0.21233367919921875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3647328107437 0 778.3647328107437 0 31.197887582883936 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 33 NaN NaN 103287.5 NaN 20103 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24509 96.584 NaN 82169 35 0 13664 0.261 + 16962 LYIDFRQDLG 10 39 620.322996212647 NaN 0 620.3082885742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYIDFRQDLG_ ENSG00000119699|ENST00000238682|TGFB3;ENST00000554980.5_1_14:76425532-76432102:-|nuORF 6.723162845929126 0.3344301934401713 1 {I|L}T 2 9 10.969 0 0 0.88558 0 0 276.177231103467 745.2998140924436 1021.4770451959107 0 0 0 0 0 0 0 0 0 {I|L}T 0.88558 - 6 + NaN NaN 100217.8 NaN 20104 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24510 96.588 NaN 147600 35 0 11259 0.261 + 10948 IYDFIGEFM 9 54 567.7622422745276 1133.509931615855 2 567.7620239257812 MULTI HCD FTMS 0 0 0 24503 22023.693359375 0.44209209695457913 2 -0.0523223876953125 7 Unmodified _IYDFIGEFM_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 10.823927491677226 0.26684000660059787 1 YW{[YD]|[{M(Oxidation (M))|F}M]} 4 6 24.693 0 0 2.1784 0 0 488.26609999824376 0 488.26609999824376 0 17.703037561203843 0 0 0 1 0 0 0 YW{[YD]|[{M(Oxidation (M))|F}M]} 2.1784 - 50 NaN NaN 109202.5 NaN 20105 4403 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24512 96.593 NaN 4177100 35 0 796810 0.327 + 15691 LPEPYWIVL 9 53 565.3182281307123 1128.6219033282246 2 565.3184814453125 MULTI HCD FTMS 0 0 0 24511 3368531.75 0.47311078398711004 5 -0.120880126953125 1 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 1 W{I|L}V{I|L} 4 5 46.938 0 0 4.1589 0 0 599.2950798570272 0 599.2950798570272 0 40.48455006504028 0 0 0 1.5 0 0 0 + W{I|L}V{I|L} 4.1589 + + 41 NaN NaN 450810.5 NaN 20106 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24513 96.597 NaN 992900 35 0 204380 0.261 + 14820 LITDILDTF 9 65 525.7894307141229 1049.5643084950457 2 525.7894287109375 MULTI HCD FTMS 0 0 0 24511 736905.4375 1 0 0 2 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 136.33342141710068 0.00022087650154924235 1 {I|L}{I|L}TD{I|L}{I|L}DT{M(Oxidation (M))|F} 9 0 + 103.34 0 0 9.8463 9.8463 96.194 0 0 0 3.8907562519182193 3.8907562519182193 3.8907562519182193 16.237125054200234 0 3.079689690656103 1.5228787452803376 1.3494850021680094 0 + + {I|L}{I|L}TD{I|L}{I|L}DT{M(Oxidation (M))|F};{I|L}{I|L}TD{I|L}D{I|L}T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}{I|L}DT{M(Oxidation (M))|F} 9.8463;8.2992;7.4967 +;-;- + 497 + NaN NaN 234127.6 NaN 20107 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24514 96.601 NaN 409070 35 0 38744 0.261 + 27710 TAQVSQLWE 9 60 531.2675634948441 1060.5205740564882 2 531.2678833007812 MULTI HCD FTMS 0 0 0 24511 246370.765625 1 0 0 3 Unmodified _TAQVSQLWE_ REV__ENSG00000109099|ENST00000312280|PMP22;REV__ENST00000494511.5_1_17:15134236-15168564:-|nuORF 16.565877749689598 0.21723083036893404 1 V{I|L}{M(Oxidation (M))|F} 3 -1 33.06 0 0 3.1173 0 0 683.28813368965 0 683.28813368965 0 0.03968976717985129 0 0 0 0.9247425010840047 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.1173 - 162 NaN NaN 142611.8 NaN 20108 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24515 96.604 NaN 249620 35 0 32055 0.261 + 15473 LPDLVVEIL 9 46 505.8101006529909 1009.6056483727818 2 505.8100280761719 MULTI HCD FTMS 0 0 0 24511 217361.875 1 0 0 4 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 25.399314129420986 0.14091189997036632 1 VE{I|L}{I|L} 4 5 43.928 0 0 4.351 0 0 537.3158034114841 0 537.3158034114841 0 26.84955642535897 0 0 0 1.3494850021680094 0 0 0 + VE{I|L}{I|L} 4.351 + + 15 NaN NaN 118156.6 NaN 20109 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24516 96.607 NaN 167230 35 0 16771 0.261 + 29312 TYNIFAITF 9 41 545.2843338321163 1088.5541147310325 2 545.7861938476562 MULTI HCD FTMS 0 0 0 24511 50747.1328125 0.05434775660601842 31 -0.6109085083007812 5 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 33.4449034751529 0.0954363425218424 1 [Y{I|L}]{[QS]|[NT]}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 2 + 78.835 0 0 7.2421 7.2421 95.714 0 0 0 19.638787285696964 55.189549981487076 19.638787285696964 78.83471251333795 0 2.4247425010840047 1.6989700043360187 0 0.3494850021680094 [Y{I|L}]{[QS]|[NT]}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 7.2421 - 181 NaN NaN 122939.1 NaN 20110 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24517 96.611 NaN 179980 35 0 19389 0.261 + 6171 FPEIQGFLQL 10 61 596.3242788416504 1190.6340047501008 2 596.3248291015625 MULTI HCD FTMS 0 0 0 24511 32548.458984375 0.07178381349301853 21 -0.4189453125 6 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 26.020703789607367 0.2677231329712098 1 {I|L}Q{I|L} 3 7 34.253 0 0 2.8768 0 0 818.3963132323919 0 818.3963132323919 0 21.267959391884546 0 0 0 0.805462187404089 0 0 0 + {I|L}Q{I|L} 2.8768 + + 29 NaN NaN 113317.7 NaN 20111 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24518 96.614 NaN 84123 35 0 7934.5 0.261 + -1 MMMVMPNIL 9 41 548.2558348751124 1094.4971168170248 2 549.765380859375 MULTI HCD FTMS 0 0 0 24511 20174.748046875 0.6718809160501968 -4 0.087982177734375 7 Oxidation (M) _M(Oxidation (M))MMVMPNIL_ REV__EMC7|p.M162I|1|0.24|ENSG00000134153|chr15:34090326-34090326|C/T|missense_variant 2.0597508629832335 0.3354026079994024 1 {I|L} 1 -1 6.9897 0 0 0.63862 0 0 129.08700614823766 849.3090926401271 978.3960987883647 0 0 0 0 0 0 0 0 0 {I|L} 0.63862 + + 6 + NaN NaN 95486.6 NaN 20112 4404 24511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24520 96.619 NaN 1606000 35 0 452290 0.327 + 11282 IYLTFPVAMF 10 71 609.3177984242096 1216.6210439152192 2 609.318115234375 MULTI HCD FTMS 0 0 0 24519 461002.03125 0.4552123279052259 -4 0.0913238525390625 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 162.95088124538222 7.72408794244308E-11 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 128.03 0 0 10.523 10.523 91.749 0 0 0 22.75453734440292 89.0304840139038 22.75453734440292 5.523787536356593 0 3.1747425010840047 1.6989700043360187 2.416386562212267 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HQ]{[SA]|[TG]}R{I|L}[Y{I|L}]{[ET]|[MV]} 10.523;10.069;9.2298;6.2953;5.3775;4.7784;0.55211 +;-;-;-;-;-;- + 829 NaN NaN 327287.3 NaN 20113 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24521 96.623 NaN 614770 35 0 107850 0.262 + 29917 VFDVALLDL 9 52 502.7868784681562 1003.5592040031124 2 502.7869873046875 MULTI HCD FTMS 0 0 0 24519 119622.484375 0.26091002395406143 1 -0.029510498046875 2 Unmodified _VFDVALLDL_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 53.832793166522166 0.026208976789938845 1 A{I|L}{I|L}D{I|L} 5 4 56.938 0 0 5.6736 0 0 460.2321593716046 0 460.2321593716046 0 34.22290038707452 0 0 0 1.774227503252014 0 0.4247425010840047 0 + A{I|L}{I|L}D{I|L} 5.6736 + + 86 NaN NaN 184660.9 NaN 20114 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24522 96.627 NaN 255500 35 0 60499 0.261 + 30107 VFWVCFII 8 60 513.7779038668633 1025.5412548005265 2 513.7780151367188 MULTI HCD FTMS 0 0 0 24519 40696.85546875 0.26019944137912365 1 -0.029510498046875 3 Unmodified _VFWVCFII_ REV__ENSG00000172940|ENST00000311856|SLC22A13;REV__nc|ENSG00000172940|Q9Y226-2|SLC22A13 17.086550045450526 0.4680768486079041 1 {I|L}{I|L}AVDD{I|L} 7 -1 51.999 0 0 5.0704 0 0 268.10338027168126 0 268.10338027168126 0 36.51486657462591 0 0 0 2.0924778212679485 0 0.3494850021680094 0 {I|L}{I|L}AVDD{I|L} 5.0704 - 118 NaN NaN 123178.7 NaN 20115 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24523 96.63 NaN 188360 35 0 32733 0.261 + 940 AYEDWFITL 9 47 579.2792091310909 1156.5438653289816 2 579.2794189453125 MULTI HCD FTMS 0 0 0 24519 42829.0390625 0.164946539446114 6 -0.1404876708984375 4 Unmodified _AYEDWFITL_ ENSG00000081923|ENST00000648908|ATP8B1 13.90604991867851 0.24021115267848145 1 T{M(Oxidation (M))|F}{I|L}[{I|L}T] 5 5 31.58 0 0 2.7306 0 0 563.1884022443375 0 563.1884022443375 0 28.0854562117252 0 0 0 1.3252574989159953 0 0 0 T{M(Oxidation (M))|F}{I|L}[{I|L}T] 2.7306 - 20 NaN NaN 124273.6 NaN 20116 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24524 96.633 NaN 124740 35 0 11938 0.261 + 33108 YDTLSEQHI 9 48 553.2626170825318 1104.5106812318636 2 553.2627563476562 MULTI HCD FTMS 0 0 0 24519 36213.33984375 0.4447006993473934 -1 0.02616119384765625 5 Unmodified _YDTLSEQHI_ REV__ENSG00000154237|ENST00000388948|LRRK1;REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF;REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF 22.736283301280096 0.1639198954644489 1 {[YD]|[{M(Oxidation (M))|F}M]}TTWT 6 -1 61.445 0 0 5.5631 0 0 0 334.1744478815063 334.1744478815063 35.825097333828566 0 0 0 0 1.579689690656103 2 0.3252574989159953 0 {[YD]|[{M(Oxidation (M))|F}M]}TTWT 5.5631 - 81 + NaN NaN 95472 NaN 20117 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24525 96.637 NaN 136580 35 0 18839 0.261 + 11163 IYITDGNMQL 10 44 584.290991888069 1166.567430842938 2 584.2913818359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _IYITDGNMQL_ ENSG00000104774|ENST00000456935|MAN2B1;nc|ENSG00000104774|O00754-2|MAN2B1 10.073929032068715 0.4168838835836452 1 [Y{I|L}]{I|L} 3 7 24.181 0 0 2.0729 0 0 0 774.312576068487 774.312576068487 0.5360498482393439 0 0 0 0 0 1.5228787452803376 0 0 + [Y{I|L}]{I|L} 2.0729 + + 58 NaN NaN 120904.7 NaN 20118 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24526 96.64 NaN 267750 35 0 92416 0.261 + -1 VLKSNYMK 8 27 499.7709292537449 997.5273055742898 2 499.77105712890625 MULTI HCD FTMS 0 0 0 24519 24220.30078125 0.1784662224792483 6 -0.1404876708984375 7 Oxidation (M) _VLKSNYM(Oxidation (M))K_ REV__ENSG00000166450|ENST00000389286|PRTG;REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant 3.944395688203298 0.5361403129012058 1 V{I|L} 2 -1 20.969 0 0 2.1021 0 0 0 782.3505376504967 782.3505376504967 6.9897000433601875 0 0 0 0 0 0 0 0 V{I|L} 2.1021 + + 2 + NaN NaN 123820.1 NaN 20119 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24527 96.643 NaN 88181 35 0 6639.4 0.261 + -1 WHREECFQFF 10 44 509.88569289506205 NaN 0 509.88543701171875 PEAK HCD FTMS 0 0 0 24519 21759.16015625 0.25228843595930156 4 -0.09471893310546875 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))WHREEC(Carbamidomethyl (C))FQFF_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|35;REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|36 0.15932191953741626 0.34004793154798674 1 {I|L}{I|L} 2 -1 19.821 0 0 1.9475 0 0 227.14869184305536 561.4129122369749 788.5616040800303 0 0 0 0 0 1.1861818737241734 0 0 0 {I|L}{I|L} 1.9475 - 21 + NaN NaN 93059.6 NaN 20120 4405 24519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24529 96.648 NaN 1835200 35 0 305900 0.327 + 17130 LYLPSFFTY 9 90 575.7944829575671 1149.574412981934 2 575.7944946289062 MULTI HCD FTMS 0 0 0 24528 811268.875 0.11197451015655915 -8 0.18685150146484375 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 146.00731375242447 1.3047045798573153E-05 1 {I|L}Y{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 108.68 0 0 9.454 9.454 96.071 0 0 0 60.54281185802168 16.478174818886373 16.478174818886373 17.21848749616356 0 2.8494850021680094 1.6989700043360187 1.5114393726401687 0 + + {I|L}Y{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]P{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}Y[PA]{M(Oxidation (M))|F}TY;[{I|L}P]Y{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;{I|L}Y{I|L}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V];[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}Y[PS]{I|L}{I|L}Y;[EP]{I|L}{[NV]|[RG]}[CS]{I|L}{I|L}Y 9.454;7.9562;6.9132;6.2574;5.17;4.7733;3.2426;2.4172;2.1553;2.0971 +;+;-;-;-;-;-;-;-;- + 1306 + NaN NaN 362092.2 NaN 20121 4406 24528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24530 96.653 NaN 226790 35 0 12035 0.262 -1 KPCRRKKKCVR 11 63 486.959059115743 1457.855347947429 3 487.293701171875 MULTI HCD FTMS 0 0 0 24528 67342.3515625 0.3756597170500146 -10 0.23565673828125 2 Carbamidomethyl (C) _KPC(Carbamidomethyl (C))RRKKKCVR_ nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2 0.09484139111097674 0.41850472438158626 1 D 1 -1 3.9794 0 0 0.27296 0 0 105.07958978151085 1234.6948494918565 1339.7744392733673 0 0 0 0 0 0 0 0 0 D 0.27296 - 3 + NaN NaN 114171.5 NaN 20122 4406 24528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24531 96.656 NaN 202430 35 0 35371 0.261 + 4260 EVIDVFEIM 9 52 547.7757226830605 1093.536892432921 2 547.7760009765625 MULTI HCD FTMS 0 0 0 24528 38463.47265625 0.6160785785652697 -2 0.05567169189453125 3 Unmodified _EVIDVFEIM_ ENSG00000100890|ENST00000534898|PRORP;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-2|PRORP;nc|ENSG00000100890|O15091-4|PRORP 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}E{I|L}M 4 5 41.938 0 0 3.8351 0 0 555.2894154279312 0 555.2894154279312 0 24.948500216800937 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}E{I|L}M 3.8351 + + 40 NaN NaN 111473 NaN 20123 4406 24528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24532 96.66 NaN 59411 35 0 13758 0.262 + 9914 IDELCIPC 8 27 453.2095991595399 NaN 0 453.209716796875 PEAK HCD FTMS 0 0 0 24528 25119.53515625 0.45001179158633575 -152 3.2768478393554688 4 Unmodified _IDELCIPC_ REV__ENSG00000163743|ENST00000324439|RCHY1;REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF;REV__ENST00000512567.5_1_4:76407750-76419412:-|nuORF;REV__ENST00000514589.5_1_4:76416932-76439505:-|nuORF;REV__nc|ENSG00000163743|Q96PM5-2|RCHY1;REV__nc|ENSG00000163743|Q96PM5-3|RCHY1;REV__nc|ENSG00000163743|Q96PM5-4|RCHY1;REV__nc|ENSG00000163743|Q96PM5-6|RCHY1;REV__nc|ENSG00000163743|Q96PM5-7|RCHY1;REV__nc|ENSG00000163743|Q96PM5-8|RCHY1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107843.9 NaN 20124 4406 24528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24533 96.663 NaN 604750 35 0 60549 0.261 + 17375 LYQILQGIVF 10 56 597.3501926626927 1192.6858323921854 2 597.3499755859375 MULTI HCD FTMS 0 0 0 24528 124285.5078125 0.054905859625395 -12 0.277679443359375 5 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 69.10491478415734 0.018645933849003846 1 [Q{I|L}]Y{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F} 10 2 + 82.445 0 0 6.9126 6.9126 88.794 0 0 0 7.9390028798052015 71.47608139917317 7.9390028798052015 9.164539485499247 0 2.3494850021680094 0 0 1.0356668758921828 [Q{I|L}]Y{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Q{I|L}]Y{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Q{I|L}]{I|L}Y{I|L}QG{I|L}V{M(Oxidation (M))|F};[Q{I|L}]{I|L}Y{I|L}[AG]G{I|L}V{M(Oxidation (M))|F} 6.9126;6.1442;6.1003;5.3319 -;-;-;- 318 NaN NaN 177654.5 NaN 20125 4406 24528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24535 96.668 NaN 1979900 35 0 366090 0.326 + 233 AFDLSQVLF 9 89 520.2765431289445 1038.5385333246888 2 520.2767333984375 MULTI HCD FTMS 0 0 0 24534 962810.6875 0.5830289693088129 3 -0.06516265869140625 1 Unmodified _AFDLSQVLF_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 118.0683919894846 0.0016252157255221692 1 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{I|L}{M(Oxidation (M))|F} 9 0 + 89.715 0 0 8.6386 8.6386 92.448 0 0 0 3.65279269351241 50.28028723600244 3.65279269351241 9.208187539523749 0 3.110924374808178 0 1.274227503252014 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}S[AG]V{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQ{I|L}V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}S[AG]V{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}DQV{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}S[AG]{I|L}V{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S{M(Oxidation (M))|F}{[DA]|[EG]}{I|L}{M(Oxidation (M))|F};[{I|L}V]QS{M(Oxidation (M))|F}{[DA]|[EG]}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}K{[DA]|[EG]}{I|L}{M(Oxidation (M))|F} 8.6386;7.7519;7.4583;7.0751;6.5717;6.2749;6.1885;5.6681;5.5914;5.479 +;-;-;-;-;-;-;-;-;- + 950 NaN NaN 378496.7 NaN 20126 4407 24534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24536 96.672 NaN 428050 35 0 76218 0.261 -1 0 64 586.7855388167187 1171.5565247002373 2 586.785400390625 MULTI HCD FTMS 0 0 0 24534 183436.953125 0.13832449420684922 -7 0.1632080078125 2 NaN NaN 1 {I|L}Y{I|L}[PS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 56.872 0 0 4.8544 0 0 0 301.0797518365844 301.0797518365844 17.84318117920506 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 {I|L}Y{I|L}[PS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8544 - 129 + NaN NaN 150243.9 NaN 20127 4407 24534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24537 96.676 NaN 378570 35 0 52392 0.261 + 27387 SYSSEEMIF 9 57 546.7323226667056 1091.4500924002111 2 546.732421875 MULTI HCD FTMS 0 0 0 24534 60483.140625 0.6810423309611311 3 -0.06516265869140625 3 Unmodified _SYSSEEMIF_ ENSG00000072080|ENST00000168148|SPP2 11.640296217721598 0.25978676193971967 1 {I|L}{M(Oxidation (M))|F} 2 7 24.508 0 0 2.2455 0 0 813.2870197457174 0 813.2870197457174 0 7.879784740104579 0 0 0 0.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2455 + + 45 + NaN NaN 142017.7 NaN 20128 4407 24534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24538 96.679 NaN 285770 35 0 40746 0.261 -1 DIDSSCSRYT 10 53 602.2504206287929 1202.4862883243857 2 602.2511596679688 MULTI HCD FTMS 0 0 0 24534 72763.4375 0.1627775971025346 -7 0.1632080078125 4 Carbamidomethyl (C) _DIDSSC(Carbamidomethyl (C))SRYT_ ENSG00000069122|ENST00000283296|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;nc|ENSG00000069122|Q8IZF2-3|ADGRF5 1.3295316138638542 0.46826628246186464 1 [QP]G 3 -1 9.3091 0 0 0.77415 0 0 0 917.3438204400999 917.3438204400999 4.704999916446797 0 0 0 0 0.4247425010840047 0 0 0 [QP]G 0.77415 - 10 + NaN NaN 132406.2 NaN 20129 4407 24534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24539 96.683 NaN 94146 35 0 8241.1 0.261 -1 MTLTKGSFTY 10 43 582.7841356957235 1163.553718458247 2 582.7843627929688 MULTI HCD FTMS 0 0 0 24534 39681.74609375 0.16597923978328072 -9 0.2064056396484375 5 Oxidation (M) _M(Oxidation (M))TLTKGSFTY_ ENSG00000171160|ENST00000307450|MORN4 7.101721422024254 0.4377131641736035 1 {M(Oxidation (M))|F}DY 3 -1 24.425 0 0 2.0991 0 0 720.3841397722771 0 720.3841397722771 0 8.967137774837608 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}DY 2.0991 - 53 NaN NaN 93806.9 NaN 20130 4407 24534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24540 96.686 NaN 142660 35 0 33125 0.261 + 34701 YPVEDYLDLF 10 40 637.3027381983183 1272.5909234634364 2 637.3030395507812 MULTI HCD FTMS 0 0 0 24534 28106.8203125 0.023118538944154516 18 -0.343719482421875 6 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 5.731851221503515 0.44496410492002586 1 {I|L}D{I|L}{M(Oxidation (M))|F} 4 6 29.553 0 0 2.3222 0 0 766.3154164044937 0 766.3154164044937 0 22.562893943202624 0 0 0 0 0 0 0 + {I|L}D{I|L}{M(Oxidation (M))|F} 2.3222 + + 26 NaN NaN 102133.6 NaN 20131 4407 24534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24542 96.691 NaN 272320 35 0 16710 0.327 + 22679 QWSRLRRRAGR 11 69 481.2835464289429 1440.8288098870287 3 481.2834777832031 MULTI HCD FTMS 0 0 0 24541 243423.9375 0.5440401273948965 -8 0.18607330322265625 1 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.1097533296519684 0.4140536653900533 1 K 1 -1 6.2591 0 0 0.43441 0 0 894.5029564708162 415.1975496881469 1309.7005061589632 0 0 0 0 0 0.5 0 0 0 K 0.43441 - 5 + NaN NaN 138383.1 NaN 20132 4408 24541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24543 96.695 NaN 296140 35 0 83479 0.261 + 986 AYFNFPELL 9 54 557.2843863626786 1112.554219792157 2 557.2844848632812 MULTI HCD FTMS 0 0 0 24541 90727.0859375 0.0011856860751511004 54 -1.1291961669921875 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 43.85829265575387 0.04763305254408404 1 N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 6 3 45.807 0 0 4.1173 0 0 381.16938979316564 0 381.16938979316564 0 35.00508444608478 0 0 0 1.3807196863200843 0 0 1.1989700043360187 + N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 4.1173 + + 30 NaN NaN 127656.2 NaN 20133 4408 24541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24544 96.699 NaN 210600 35 0 16125 0.261 + 26154 SPMDIFDMF 9 59 559.7305171616102 1117.4464813900204 2 559.7306518554688 MULTI HCD FTMS 0 0 0 24541 72718.8515625 0.32764790388707865 -8 0.18607330322265625 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 46.020951573049366 0.037705236580089195 1 {[{M(Oxidation (M))|F}D]|MM}PA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 54.097 0 0 4.8411 4.8411 81.328 0 0 0 0.5086588327901609 49.91557245940342 0.5086588327901609 0.5115252244738144 0 1.6307196863200843 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{I|L}A{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[MD][PS]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PA{I|L}YDM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{I|L}AYDM{M(Oxidation (M))|F};[MD][PS]{I|L}YDM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{I|L}[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8411;4.7953;4.0831;3.8697;3.8239;3.1117;2.4052 -;-;-;-;-;-;- 217 NaN NaN 126664.4 NaN 20134 4408 24541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24545 96.702 NaN 193110 35 0 16750 0.261 -1 0 59 572.3069438301637 1142.5993347271274 2 572.3082885742188 MULTI HCD FTMS 0 0 0 24541 76383.9453125 0.04945348263083082 -10 0.22927093505859375 4 NaN NaN 1 V{I|L} 2 -1 25.217 0 0 2.2069 0 0 912.4391703961192 0 912.4391703961192 0 12.291877992711376 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.2069 - 81 NaN NaN 125000.2 NaN 20135 4408 24541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24546 96.705 NaN 151630 35 0 16390 0.261 + 769 ASLGYYLYVI 10 43 581.3129418366632 1160.6113307401263 2 581.3130493164062 MULTI HCD FTMS 0 0 0 24541 19383.748046875 0.08272492658808855 9 -0.188751220703125 5 Unmodified _ASLGYYLYVI_ REV__ELOVL1|p.M178V|1|0.38|ENSG00000066322|chr1:43364410-43364410|T/C|missense_variant 6.2057823575117 0.44245551207394906 1 V{I|L} 2 -1 25.969 0 0 2.2375 0 0 930.45219618965 0 930.45219618965 0 14.771212547196624 0 0 0 0.5 0 0 0 V{I|L} 2.2375 + + 54 NaN NaN 105662.9 NaN 20136 4408 24541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24547 96.709 NaN 91954 35 0 20465 0.262 -1 FVFGHAVC 8 35 468.7235025628306 NaN 0 468.72393798828125 PEAK HCD FTMS 0 0 0 24541 23516.435546875 0.7935896904388459 1 -0.02278900146484375 6 Carbamidomethyl (C) _FVFGHAVC(Carbamidomethyl (C))_ ENST00000477049.1_1_9:135137816-135138059:-|nuORF 0.7936320650641473 0.38822285293237185 1 Y 1 -1 7.7642 0 0 0.83001 0 0 611.3272497766781 158.02358423404533 769.3508340107234 0 0 0 0 0 0.5 0 0 0 Y 0.83001 - 2 + NaN NaN 99707.8 NaN 20137 4408 24541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24549 96.714 NaN 527500 35 0 64986 0.327 + 2946 DYTTWTALL 9 69 542.2714411910683 1082.5283294489366 2 542.2718505859375 MULTI HCD FTMS 0 0 0 24548 272231.53125 0.6115461598445253 5 -0.10100555419921875 1 Unmodified _DYTTWTALL_ ENSG00000076382|ENST00000321765|SPAG5 115.6920309560759 0.002013163348980568 1 {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L} 9 0 + 93.03 0 0 8.5938 8.5938 94.627 0 0 0 14.801594589017384 16.478174818886373 14.801594589017384 14.801594589017384 0 2.531234684152075 1.5228787452803376 1.5356668758921828 0 + + {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ETWTA{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}E]{[DA]|[EG]}TA{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TT{[QV]|[N{I|L}]|[RA]|[KV]}M{I|L}{I|L};{[ET]|[MV]}{[{M(Oxidation (M))|F}C]|[YS]}WTA{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[QP][YE]A{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TT{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}M{I|L} 8.5938;7.2265;5.0621;3.5112;3.4295;3.3641;2.3829 +;-;-;-;-;-;- + 568 NaN NaN 182485.1 NaN 20138 4409 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24550 96.718 NaN 1306400 35 0 339320 0.261 + 4471 EYIQFVPLL 9 89 561.3157167584666 1120.616880583733 2 561.3160400390625 MULTI HCD FTMS 0 0 0 24548 481778.53125 0.03218969079883032 -9 0.2088623046875 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 103.35351024395868 0.004027461563756449 1 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 84.351 0 0 7.5272 7.5272 90.721 0 0 0 22.81665831563508 54.38592750499161 22.81665831563508 9.208187539523749 0 2.548455006504028 0 1.805462187404089 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]P{I|L}{I|L};{I|L}{I|L}[{M(Oxidation (M))|F}E][YN]P{I|L}{I|L};[YE]{I|L}[NP]{M(Oxidation (M))|F}{I|L}{I|L}{I|L};[YE][QP]V{M(Oxidation (M))|F}{I|L}{I|L}{I|L};[YE]{I|L}Q[{I|L}V][{I|L}P]{M(Oxidation (M))|F} 7.5272;6.7055;2.5742;2.5158;1.6191;1.1501;1.1256 +;-;-;-;-;-;- + 611 NaN NaN 291307.8 NaN 20139 4409 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24551 96.722 NaN 311160 35 0 48691 0.261 + 22690 QWVGACWLGY 10 54 591.7739371122041 1181.533321291208 2 593.2918701171875 MULTI HCD FTMS 0 0 0 24548 9114.6396484375 0.11005184117164868 8 -0.16596221923828125 3 Unmodified _QWVGACWLGY_ SLCO1C1|p.W274C|1|0.36|ENSG00000139155|chr12:20721850-20721850|G/T|missense_variant 4.3292370932331545 0.45238836448149167 1 QW{I|L}NE 5 7 35.573 0 0 3.0108 0 0 0 508.2032564752563 508.2032564752563 28.58349385648225 0 0 0 0 0 0 0 0 QW{I|L}NE 3.0108 - 85 + NaN NaN 131401.9 NaN 20140 4409 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24552 96.725 NaN 317880 35 0 37789 0.261 + 6891 FPVEFLIQV 9 63 546.3105221327451 1090.60649133229 2 546.3104858398438 MULTI HCD FTMS 0 0 0 24548 62290.23828125 0.2749473168400242 -9 0.2088623046875 4 Unmodified _FPVEFLIQV_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9 18.1463463914782 0.20357593197100715 1 R{I|L}{I|L}QV 5 5 40.802 0 0 3.7412 0 0 463.18589980293126 0 463.18589980293126 0 29.119543704721593 0 0 0 1 0 0 0 R{I|L}{I|L}QV 3.7412 - 132 NaN NaN 126244 NaN 20141 4409 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24553 96.728 NaN 95893 35 0 4903.8 0.261 + 11727 KDEKRKLERQR 11 56 495.9588372993481 1484.8546824982443 3 495.95892333984375 MULTI HCD FTMS 0 0 0 24548 47008.95703125 0.31247080232156466 15 -0.28912353515625 5 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 0.4545168274142398 0.41692731010159206 1 PC 2 11 9.464 0 0 0.63737 0 0 608.4173955258436 673.3675631158811 1281.7849586417246 0 0 0 0 0 0 0 0 0 PC 0.63737 - 16 + NaN NaN 103825 NaN 20142 4409 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24555 96.733 NaN 892260 35 0 165480 0.327 + 15692 LPEPYWIVL 9 44 565.3182281307123 1128.6219033282246 2 565.3184204101562 MULTI HCD FTMS 0 0 0 24554 536661.5 0.07537418728521661 11 -0.2303009033203125 1 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 1 W{I|L}V{I|L} 4 5 45.433 0 0 4.0255 0 0 599.2941588085966 0 599.2941588085966 0 31.453650195120844 0 0 0 1.5 0 0 0 + W{I|L}V{I|L} 4.0255 + + 37 NaN NaN 224179.2 NaN 20143 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24556 96.738 NaN 340320 35 0 62533 0.261 + 14821 LITDILDTF 9 48 525.7894307141229 1049.5643084950457 2 525.7894897460938 MULTI HCD FTMS 0 0 0 24554 190147.15625 0.25803467659987245 6 -0.133758544921875 2 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 71.13359017698441 0.008721403657255008 1 {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}DT{M(Oxidation (M))|F} 9 0 + 68.082 0 0 6.4867 6.4867 88.816 0 0 0 4.761832342372415 49.20818753952375 4.761832342372415 9.208187539523749 0 2 1.3979400086720375 0 0 + + {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}{I|L}DT{M(Oxidation (M))|F} 6.4867;5.6094 +;- + 188 NaN NaN 141287.8 NaN 20144 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24557 96.741 NaN 169090 35 0 24498 0.261 + 17455 LYSITYFWF 9 44 620.3082668408425 1238.601980748485 2 620.308349609375 MULTI HCD FTMS 0 0 0 24554 75895.3984375 0.46618177661575044 -8 0.1927337646484375 3 Unmodified _LYSITYFWF_ REV__ENSG00000134160|ENST00000256552|TRPM1;REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2-3|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2-5|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2|TRPM1 16.942295170755138 0.21397866736869717 1 {I|L}Y{I|L}T 4 -1 57.652 0 0 4.6546 0 0 0 745.3004703194674 745.3004703194674 42.81357210935475 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 {I|L}Y{I|L}T 4.6546 - 43 + NaN NaN 107214.8 NaN 20145 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24558 96.744 NaN 160390 35 0 16305 0.262 + 15474 LPDLVVEIL 9 36 505.8101006529909 1009.6056483727818 2 505.81005859375 MULTI HCD FTMS 0 0 0 24554 65877.9765625 0.3030797216048122 6 -0.133758544921875 4 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 19.256988751693697 0.19398022840297344 1 VE{I|L}{I|L} 4 5 42.735 0 0 4.2329 0 0 537.3152691268406 0 537.3152691268406 0 25.74539712336197 0 0 0 1.2302046884880937 0 0 0 + VE{I|L}{I|L} 4.2329 + + 14 NaN NaN 116596.5 NaN 20146 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24559 96.748 NaN 63536 35 0 14901 0.261 + 20427 PAEHHSDL 8 31 453.2095991595399 NaN 0 453.209228515625 PEAK HCD FTMS 0 0 0 24554 23196.150390625 0.4155547119109018 -148 3.171905517578125 5 Unmodified _PAEHHSDL_ REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89624.9 NaN 20147 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24560 96.751 NaN 75093 35 0 5369 0.261 + 16853 LYEMDRKLM 9 45 599.8031540417942 NaN 0 599.802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYEMDRKLM_ REV__ENST00000449218.5_1_2:136740987-136741020:-|nuORF 7.910154910731844 0.25691533546754686 1 {I|L}DW{I|L} 4 -1 14.412 0 0 1.2035 0 0 394.17227380448827 273.12323938541255 667.2955131899008 0 0 0 0 0 0 0 0 0 {I|L}DW{I|L} 1.2035 - 40 + NaN NaN 90432 NaN 20148 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24561 96.754 NaN 105540 35 0 24310 0.263 + 2405 DPLWISLI 8 40 478.7762973944334 955.5380418556668 2 478.7764587402344 MULTI HCD FTMS 0 0 0 24554 19738.359375 0.03309993376109135 20 -0.37939453125 7 Unmodified _DPLWISLI_ tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1 5.230669730166228 0.5342319408533849 1 {I|L}{I|L} 2 6 20.969 0 0 2.1945 0 0 711.3609045821111 0 711.3609045821111 0 17.11825521285522 0 0 0 0 0 0 0 + {I|L}{I|L} 2.1945 + + 11 NaN NaN 97873.1 NaN 20149 4410 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24563 96.759 NaN 1422400 35 0 385900 0.327 + 11283 IYLTFPVAMF 10 61 609.3177984242096 1216.6210439152192 2 609.3176879882812 MULTI HCD FTMS 0 0 0 24562 993916.1875 0.9814336397342327 2 -0.03900909423828125 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 124.02 0 0 10.194 10.194 91.583 0 0 0 22.754537344402905 105.60525350536075 22.754537344402905 5.523787536356579 0 3.1989700043360187 1.6989700043360187 1.9916440611282626 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[MS]|[{M(Oxidation (M))|F}A]}V{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}[CS]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}[DC]{M(Oxidation (M))|F}VVV{M(Oxidation (M))|F} 10.194;9.7399;8.8703;6.0385;5.2327;4.6714;4.6536;3.2795;2.9666;1.1371 +;-;-;-;-;-;-;-;-;- + 591 NaN NaN 303365.2 NaN 20150 4411 24562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24564 96.764 NaN 241690 35 0 23254 0.261 + 264 AFKWFCFL 8 47 531.2675634948441 1060.5205740564882 2 531.2675170898438 MULTI HCD FTMS 0 0 0 24562 73690.359375 0.2991035043791024 7 -0.13965606689453125 2 Unmodified _AFKWFCFL_ REV__ENSG00000109181|ENST00000265403|UGT2B10;REV__ENSG00000135226|ENST00000335568|UGT2B28;REV__ENSG00000171234|ENST00000305231|UGT2B7;REV__ENSG00000213759|ENST00000446444|UGT2B11;REV__nc|ENSG00000109181|P36537-2|UGT2B10 14.581692164780916 0.48650662947107914 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.8492 0 0 782.3579896832445 0 782.3579896832445 0 0.9981687092272935 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.8492 - 123 + NaN NaN 118717.6 NaN 20151 4411 24562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24565 96.767 NaN 193330 35 0 14764 0.261 + 33814 YLIQLSRPPE 10 49 608.341727484254 1214.6689020353078 2 608.3412475585938 MULTI HCD FTMS 0 0 0 24562 80128.6953125 0.38541326902860196 -7 0.16664886474609375 3 Unmodified _YLIQLSRPPE_ ENSG00000182791|ENST00000333861|CCDC87 18.721224879955976 0.3359999958351898 1 [Y{I|L}]Q{I|L}{I|L}QYK{M(Oxidation (M))|F} 9 6 + 66.493 0 0 5.4742 5.4742 85.714 0 0 0 4.309093686208669 49.34115329172698 4.309093686208669 8.010299956639813 0 2.3182503180159344 1.5228787452803376 0 0 [Y{I|L}]Q{I|L}{I|L}QYK{M(Oxidation (M))|F};[Y{I|L}]{I|L}Q{I|L}QYK{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QYK{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]YK{M(Oxidation (M))|F};[Y{I|L}]Q[RH][RP]V{M(Oxidation (M))|F};[Y{I|L}]{I|L}Q{I|L}[AG]YK{M(Oxidation (M))|F};[Y{I|L}]{I|L}[{M(Oxidation (M))|F}T]N[KA]V{M(Oxidation (M))|F};[Y{I|L}]{I|L}[{M(Oxidation (M))|F}T]N{[VA]|[{I|L}G]}K{M(Oxidation (M))|F};[Y{I|L}]{I|L}[{M(Oxidation (M))|F}T]N[KG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}H[{I|L}P]{I|L}{M(Oxidation (M))|F} 5.4742;4.8147;4.7161;4.7161;4.3312;4.0567;3.3211;2.4138;2.334;2.031 -;-;-;-;-;-;-;-;-;- 209 NaN NaN 111869.9 NaN 20152 4411 24562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24566 96.771 NaN 235820 35 0 43844 0.261 + 20500 PDFDFPPEFY 10 41 637.2742135475562 1272.5338741619123 2 637.2753295898438 MULTI HCD FTMS 0 0 0 24562 60747.51171875 0.5405478972096617 -3 0.0685577392578125 4 Unmodified _PDFDFPPEFY_ ENSG00000087460|ENST00000371085|GNAS;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;nc|ENSG00000087460|P63092-2|GNAS;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-4|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS 6.2057823575117 0.44245551207394906 1 EW[Y{I|L}]{I|L}{M(Oxidation (M))|F} 6 9 31.643 0 0 2.4866 0 0 403.17427260566564 0 403.17427260566564 0 28.54425638516595 0 0 0 0.9247425010840047 0 0 0 EW[Y{I|L}]{I|L}{M(Oxidation (M))|F} 2.4866 - 40 NaN NaN 119179.8 NaN 20153 4411 24562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24567 96.774 NaN 85954 35 0 6005 0.263 + 23813 RRREIHEHKLR 11 49 510.63433864704723 1528.8811865413418 3 510.6346740722656 MULTI HCD FTMS 0 0 0 24562 46059 0.4425253876576025 -7 0.16664886474609375 5 Unmodified _RRREIHEHKLR_ REV__ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;REV__ENSG00000160007|ENST00000672722|ARHGAP35 0 0.41892066650488113 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.30114 0 0 1055.6526536817698 323.17124353580317 1378.823897217573 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.30114 - 3 + NaN NaN 100002.3 NaN 20154 4411 24562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24569 96.779 NaN 4896000 35 0 879370 0.327 + 17131 LYLPSFFTY 9 77 575.7944829575671 1149.574412981934 2 575.7950439453125 MULTI HCD FTMS 0 0 0 24568 2900155.75 0.4002908647074355 -2 0.04578399658203125 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 161.8943921545576 8.236690082142223E-09 1 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 91.705 0 0 7.9773 7.9773 92.5 0 0 0 16.63373177694369 26.02105220914318 16.63373177694369 10.440680443502757 0 2.7614393726401687 1.6989700043360187 1.1237125054200234 0 + + [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]P{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}Y[PA]{M(Oxidation (M))|F}TY;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}AYP{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}SP{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}YSP{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}Y{I|L};[{M(Oxidation (M))|F}T]YAYP{I|L}{I|L}Y;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TYSP{I|L}{I|L}Y 7.9773;7.0691;6.1042;4.9691;4.4009;4.2264;3.9645;3.9029;3.6581;3.6183 +;-;-;-;-;-;-;-;-;- + 720 NaN NaN 543457.2 NaN 20155 4412 24568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24570 96.783 NaN 170950 35 0 36464 0.261 + 15374 LPDFPALVL 9 43 492.7917771024737 983.5690012717474 2 492.7917175292969 MULTI HCD FTMS 0 0 0 24568 49779.73828125 0.2030783074228523 -6 0.13050079345703125 2 Unmodified _LPDFPALVL_ ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A 15.847184025352803 0.2234401846867398 1 V{I|L} 2 7 25.969 0 0 2.6403 0 0 753.4070100097971 0 753.4070100097971 0 20.440228147639203 0 0 0 0.5 0 0 0 + V{I|L} 2.6403 + + 9 NaN NaN 106309.8 NaN 20156 4412 24568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24571 96.787 NaN 391450 35 0 61317 0.261 -1 LDPYKYMTL 9 73 580.2890580475128 1158.5635631618254 2 580.2880249023438 MULTI HCD FTMS 0 0 0 24568 25012.00390625 0.06537957870341327 -6 0.13050079345703125 3 Oxidation (M) _LDPYKYM(Oxidation (M))TL_ BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant;ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 9.38312468134398 0.279288223203164 1 P{I|L}{I|L} 3 -1 26.198 0 0 2.2612 0 0 817.3302479474625 0 817.3302479474625 0 15.764837301042718 0 0 0 0 0 0 0 P{I|L}{I|L} 2.2612 - 188 NaN NaN 147624 NaN 20157 4412 24568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24572 96.79 NaN 152200 35 0 15029 0.261 + 5271 FFFFGFFF 8 52 553.2626170825318 1104.5106812318636 2 553.2630615234375 MULTI HCD FTMS 0 0 0 24568 29849.224609375 0.36654920855242307 6 -0.1201324462890625 4 Unmodified _FFFFGFFF_ ENST00000460006.5_1_20:5177814-5177943:+|nuORF 6.354104778181461 0.5325651638111438 1 [YV]{[ES]|[DT]|[{I|L}C]}GQV 7 7 12.184 0 0 1.1031 0 0 0 339.1113219905548 339.1113219905548 5.194182131708303 0 0 0 0 0 1.6989700043360187 0 0 [YV]{[ES]|[DT]|[{I|L}C]}GQV 1.1031 - 161 NaN NaN 120955.1 NaN 20158 4412 24568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24573 96.793 NaN 71520 35 0 7402.1 0.261 -1 DYFHWCYL 8 49 602.2504206287929 1202.4862883243857 2 604.7846069335938 MULTI HCD FTMS 0 0 0 24568 14855.7041015625 0.741870038834906 -2 0.04578399658203125 5 Carbamidomethyl (C) _DYFHWC(Carbamidomethyl (C))YL_ ENSG00000145536|ENST00000274181|ADAMTS16 2.8892196856762586 0.5377058178582064 1 T 1 -1 9.2917 0 0 0.77271 0 0 177.06866000455108 921.3551729791624 1098.4238329837135 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.77271 - 32 + NaN NaN 99153.1 NaN 20159 4412 24568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24575 96.798 NaN 2186300 35 0 218010 0.327 + 17376 LYQILQGIVF 10 77 597.3501926626927 1192.6858323921854 2 597.3502197265625 MULTI HCD FTMS 0 0 0 24574 673212.875 0.29740661049977224 -5 0.10756683349609375 1 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 131.26759243768294 1.7145119685811063E-05 1 [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F} 10 0 + 108.84 0 0 9.1253 9.1253 92.289 0 0 0 17.10354236530445 16.53212513775344 16.53212513775344 9.164539485499247 0 2.9802046884880937 1.3010299956639813 0 1.566901560044258 + + [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}QGV{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}V{M(Oxidation (M))|F}T{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]GV{I|L}{M(Oxidation (M))|F};[{I|L}V]G{M(Oxidation (M))|F}T{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QGV{I|L}{M(Oxidation (M))|F};[Y{I|L}][KT]G[VP]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F} 9.1253;8.3569;8.0377;7.8821;7.6912;7.1137;6.9827;6.7944;6.3998;6.2778 +;-;-;-;-;-;-;-;-;- + 1505 NaN NaN 425373.7 NaN 20160 4413 24574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24576 96.803 NaN 323000 35 0 15518 0.262 -1 0 80 486.959059115743 1457.855347947429 3 486.95892333984375 MULTI HCD FTMS 0 0 0 24574 122839.359375 0.7387470019631714 -5 0.10756683349609375 2 NaN NaN 1 [Y{I|L}]P 3 -1 15.986 0 0 1.0965 0 0 0 1081.6334022568305 1081.6334022568305 7.402500735702306 0 0 0 0 0 1.154901959985743 0 0 [Y{I|L}]P 1.0965 - 61 NaN NaN 136467.7 NaN 20161 4413 24574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24577 96.806 NaN 399780 35 0 51071 0.261 + 34510 YPFPVPPLL 9 59 521.8023202830763 1041.5900876329524 2 521.802490234375 MULTI HCD FTMS 0 0 0 24574 79280.71875 0.6698059133935415 -3 0.06526947021484375 3 Unmodified _YPFPVPPLL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 20.871210003555333 0.18003371494288972 1 PP{I|L}{I|L} 4 5 34.412 0 0 3.3038 0 0 603.3058898582134 0 603.3058898582134 0 13.750612633917001 0 0 0 0.8494850021680094 0 0 0 + PP{I|L}{I|L} 3.3038 + + 121 NaN NaN 146979.4 NaN 20162 4413 24574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24578 96.81 NaN 75162 35 0 8640.9 0.261 + -1 FIYSIVILILC 11 41 451.9324076105336 1352.7753934318007 3 451.932373046875 MULTI HCD FTMS 0 0 0 24574 17688.90625 0.615276294227875 -4 0.08477783203125 4 Carbamidomethyl (C) _FIYSIVILILC(Carbamidomethyl (C))_ REV__ENSG00000196248|ENST00000641123|OR10S1;REV__nc|ENSG00000196248|Q8NGN2|OR10S1 1.4551175022131473 0.41253901545122046 1 GQ{I|L}{I|L} 4 -1 14.412 0 0 1.0654 0 0 537.3233803476195 401.1842135065063 938.5075938541258 0 0 0 0 0 0 0 0 0 GQ{I|L}{I|L} 1.0654 - 26 + NaN NaN 106523.1 NaN 20163 4413 24574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24580 96.815 NaN 1648600 35 0 315710 0.327 -1 0 80 586.7855388167187 1171.5565247002373 2 586.7858276367188 MULTI HCD FTMS 0 0 0 24579 1326135 1 0 0 1 NaN NaN 1 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 82.683 0 0 7.0575 0 0 0 301.07981287174067 301.07981287174067 29.649640954996954 0 0 0 0 1.774227503252014 1.6989700043360187 0.6505149978319906 0 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.0575 - 350 + NaN NaN 339497.2 NaN 20164 4414 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24581 96.819 NaN 823270 35 0 130030 0.261 + 25856 SMERSSENTY 10 69 602.2504206287929 1202.4862883243857 2 602.2504272460938 MULTI HCD FTMS 0 0 0 24579 447011.375 1 0 0 2 Unmodified _SMERSSENTY_ ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E 5.296884461304476 0.4472664531305844 1 [Y{I|L}]{I|L} 3 10 29.494 0 0 2.4527 0 0 0 810.2316551058888 810.2316551058888 0.40694327428688837 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 [Y{I|L}]{I|L} 2.4527 - 232 NaN NaN 203708.8 NaN 20165 4414 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24582 96.823 NaN 474770 35 0 32839 0.261 + 11138 IYIPSYFDF 9 91 582.7841356957235 1163.553718458247 2 582.7844848632812 MULTI HCD FTMS 0 0 0 24579 193861.28125 0.810875307988419 -2 0.03571319580078125 3 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 30.224811164608877 0.11021837014094292 1 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DY 9 2 + 60.562 0 0 5.2049 5.2049 82.415 0 0 0 24.13734275855269 34.43817040952724 24.13734275855269 1.4612803567823818 0 1.4698565171985374 1.6989700043360187 0 0 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DY;[Y{I|L}]{I|L}{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}DY;[Y{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]DY;[Y{I|L}]{[HG]|PP}[YT]{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}{[CA]|SS}[HC][WR];[Y{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DS]|[MA]|[CV]|TT};[Y{I|L}]{I|L}{M(Oxidation (M))|F}{[CP]|[EA]}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};[Y{I|L}]{I|L}P[EC][KP]{[DS]|[MA]|[CV]|TT};[{I|L}P][Y{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DY;{[CT]|[{M(Oxidation (M))|F}G]}[R{M(Oxidation (M))|F}]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TY 5.2049;5.0793;4.0455;2.5871;2.3739;2.0729;1.7393;1.3496;1.1861;0.65938 -;-;-;-;-;-;-;-;-;- 961 NaN NaN 164476.7 NaN 20166 4414 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24583 96.826 NaN 424570 35 0 86965 0.261 + -1 RPGDEWPWAC 10 59 637.2742135475562 1272.5338741619123 2 637.274169921875 MULTI HCD FTMS 0 0 0 24579 112381.3671875 1 0 0 4 Carbamidomethyl (C) _RPGDEWPWAC(Carbamidomethyl (C))_ REV__ENST00000561911.5_1_16:89619423-89623498:+|nuORF 5.731851221503515 0.44496410492002586 1 T{I|L}EW[Y{I|L}]{I|L}{M(Oxidation (M))|F} 8 -1 45.17 0 0 3.5496 0 0 189.04356581855626 0 189.04356581855626 0 41.19070971708595 0 0 0 1.305462187404089 0 0 0 T{I|L}EW[Y{I|L}]{I|L}{M(Oxidation (M))|F} 3.5496 - 117 NaN NaN 152905.5 NaN 20167 4414 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24584 96.829 NaN 242310 35 0 33772 0.261 + 15837 LPISCKSKID 10 57 552.3106719323575 1102.606790931515 2 552.3115234375 MULTI HCD FTMS 0 0 0 24579 34651.078125 0.4315342983787028 -6 0.1237945556640625 5 Unmodified _LPISCKSKID_ REV__ENST00000260641.9_1_2:65496499-65496670:+|nuORF 30.636539890814138 0.2266618088935899 1 {I|L}[C(Carbamidomethyl (C))N]Q{M(Oxidation (M))|F}V 6 -1 44.385 0 0 4.0255 0 0 0 338.20805291798786 338.20805291798786 14.107281392838829 0 0 0 0 1.8494850021680094 0 0 0.3494850021680094 {I|L}[C(Carbamidomethyl (C))N]Q{M(Oxidation (M))|F}V 4.0255 - 145 + NaN NaN 114930.1 NaN 20168 4414 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24585 96.832 NaN 51104 35 0 4248.1 0.261 -1 0 30 641.3847909797422 1280.7550290262843 2 641.3843383789062 MULTI HCD FTMS 0 0 0 24579 6650.72412109375 0.03006491037415366 -7 0.14665985107421875 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99213.5 NaN 20169 4414 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24587 96.837 NaN 1906800 35 0 326600 0.327 -1 0 89 572.3069438301637 1142.5993347271274 2 572.3074340820312 MULTI HCD FTMS 0 0 0 24586 656002.25 0.42471746835590557 -3 0.05853271484375 1 NaN NaN 1 [YE]{I|L}Q{M(Oxidation (M))|F}VW 7 -1 68.101 0 0 5.9602 0 0 0 174.0908296755047 174.0908296755047 28.270694719097946 0 0 0 0 2.274227503252014 1.5228787452803376 2.1861818737241734 0 [YE]{I|L}Q{M(Oxidation (M))|F}VW 5.9602 - 1240 NaN NaN 373459.3 NaN 20170 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24588 96.842 NaN 388630 35 0 17605 0.262 + 22680 QWSRLRRRAGR 11 82 481.2835464289429 1440.8288098870287 3 481.28350830078125 MULTI HCD FTMS 0 0 0 24586 267057.09375 0.5968590303714926 -1 0.02281951904296875 2 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 2.4347853303010236 0.4082425251555256 1 K 1 -1 8.4949 0 0 0.58958 0 0 1026.582430007997 283.1187838190063 1309.7012138270031 0 0 0 0 0 0.5 0 0 0 K 0.58958 - 51 + NaN NaN 140993.5 NaN 20171 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24589 96.845 NaN 481270 35 0 66632 0.261 + 234 AFDLSQVLF 9 55 520.2765431289445 1038.5385333246888 2 520.2766723632812 MULTI HCD FTMS 0 0 0 24586 150908.890625 0.09138271531767778 11 -0.19347381591796875 3 Unmodified _AFDLSQVLF_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 51.629811660486645 0.02929079705179888 1 {I|L}SQV{I|L}{M(Oxidation (M))|F} 6 3 68.378 0 0 6.5841 0 0 333.13130385566564 0 333.13130385566564 0 44.90101961365441 0 0 0 2.1747425010840047 0 0.8494850021680094 0 + {I|L}SQV{I|L}{M(Oxidation (M))|F} 6.5841 + + 132 NaN NaN 158997 NaN 20172 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24590 96.849 NaN 198350 35 0 54901 0.261 + 987 AYFNFPELL 9 43 557.2843863626786 1112.554219792157 2 557.2854614257812 MULTI HCD FTMS 0 0 0 24586 44170.25390625 0.0005772482875577768 61 -1.2275619506835938 4 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 24.020572477871973 0.15282392193088168 1 EP{M(Oxidation (M))|F}[HN]PE 7 5 29.67 0 0 2.6669 0 0 244.17772109199376 0 244.17772109199376 0 14.097200695509287 0 0 0 0.9247425010840047 0 0 0 EP{M(Oxidation (M))|F}[HN]PE 2.6669 - 37 NaN NaN 119087 NaN 20173 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24591 96.852 NaN 131990 35 0 20922 0.261 + 29242 TYLNFPVLI 9 46 540.3101111712381 1078.605669409276 2 540.31005859375 MULTI HCD FTMS 0 0 0 24586 66576.625 0.7782528496550021 -1 0.02281951904296875 5 Unmodified _TYLNFPVLI_ ENST00000511335.5_1_6:97720608-97720671:-|nuORF 41.8396318013385 0.056899836730939755 1 N{M(Oxidation (M))|F}VP{I|L}{I|L} 6 5 41.107 0 0 3.8111 0 0 377.19822890449376 0 377.19822890449376 0 32.523656471886326 0 0 0 1.774227503252014 0 0 0.6989700043360187 N{M(Oxidation (M))|F}VP{I|L}{I|L} 3.8111 - 97 NaN NaN 100600.9 NaN 20174 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24592 96.855 NaN 178130 35 0 22290 0.261 + 27266 SYPNVFLVF 9 62 543.287036330997 1084.559519728794 2 543.2870483398438 MULTI HCD FTMS 0 0 0 24586 17455.7890625 0.0035320183196325006 31 -0.6349945068359375 6 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 34.40172386719151 0.0910440009062557 1 {M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 4 5 48.928 0 0 4.5113 0 0 560.2590595892583 0 560.2590595892583 0 35.74031267727719 0 0 0 1.6989700043360187 0 0 0 + {M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 4.5113 + + 44 NaN NaN 118034.1 NaN 20175 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24593 96.859 NaN 332640 35 0 48456 0.261 + 15892 LPLLLDFSW 9 58 552.3106719323575 1102.606790931515 2 552.3111572265625 MULTI HCD FTMS 0 0 0 24586 34533.953125 0.43007565820262295 -5 0.10431671142578125 7 Unmodified _LPLLLDFSW_ REV__ENSG00000120868|ENST00000551964|APAF1;REV__nc|ENSG00000120868|O14727-2|APAF1;REV__nc|ENSG00000120868|O14727-3|APAF1;REV__nc|ENSG00000120868|O14727-4|APAF1 24.67388899826682 0.14717941214954053 1 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 6 -1 58.889 0 0 5.3409 0 0 387.1798573224625 0 387.1798573224625 0 19.018637558036673 0 0 0 1.9247425010840047 0 0 0 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 5.3409 - 234 NaN NaN 145075.1 NaN 20176 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24594 96.862 NaN 55177 35 0 7175.2 0.262 + -1 YMIQFYKRC 9 38 436.87969707007557 1307.6172618104267 3 437.21392822265625 MULTI HCD FTMS 0 0 0 24586 34713.2890625 0.7193670258050379 24 -0.46103668212890625 8 Carbamidomethyl (C) _YMIQFYKRC(Carbamidomethyl (C))_ REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|34|2|sense 0.26902006276349055 0.3489776809129786 1 H 1 -1 1.5938 0 0 0.12189 0 0 848.6549337848393 318.88474451236567 1167.539678297205 0 0 0 0 0 0 0 0 0 H 0.12189 - 2 + NaN NaN 96346 NaN 20177 4415 24586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24596 96.867 NaN 12939000 35 0 3864300 0.327 + 4472 EYIQFVPLL 9 83 561.3157167584666 1120.616880583733 2 561.31640625 MULTI HCD FTMS 0 0 0 24595 12204177 0.8154134287904649 -2 0.0522613525390625 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 139.13845188893973 5.0762478717762276E-05 1 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 112.39 0 0 10.029 10.029 93.811 0 0 0 25.912294333283683 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6549471895720984 0.958607314841775 2.7658715643802765 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[Q{I|L}]YE{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V]QP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V][AG]P{I|L}{I|L};[YE]{I|L}Q{M(Oxidation (M))|F}V{I|L}P{I|L};[{I|L}P]V{M(Oxidation (M))|F}Q[YE]{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}V{I|L}P{I|L};[Q{I|L}]Y{[{M(Oxidation (M))|F}D]|MM}{I|L}P{I|L}{I|L};[Q{I|L}]Y[{M(Oxidation (M))|F}V]EP{I|L}{I|L} 10.029;9.2074;7.7168;6.5483;5.7266;5.4202;4.804;4.3652;4.1677;4.038 +;-;-;-;-;-;-;-;-;- + 1501 NaN NaN 865272.6 NaN 20178 4416 24595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24597 96.871 NaN 330420 35 0 46965 0.261 + -1 PYGLFLLNL 9 51 546.3105221327451 1090.60649133229 2 546.3106079101562 MULTI HCD FTMS 0 0 0 24595 88635.234375 0.3912333704497733 -2 0.0522613525390625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PYGLFLLNL_ REV__ENSG00000176142|ENST00000319172|TMEM39A;REV__ENST00000486235.5_1_3:119165863-119180852:-|nuORF 38.15118350030904 0.07383188072201104 1 {I|L}M{M(Oxidation (M))|F}{I|L}{I|L}QV 7 -1 55.878 0 0 5.1236 0 0 228.11094863105626 0 228.11094863105626 0 39.33561654977865 0 0 0 1.3807196863200843 0 0 0 {I|L}M{M(Oxidation (M))|F}{I|L}{I|L}QV 5.1236 - 255 NaN NaN 149239.6 NaN 20179 4416 24595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24598 96.875 NaN 509280 35 0 66311 0.261 + 11728 KDEKRKLERQR 11 73 495.95884264936836 1484.8546985483051 3 496.293701171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 0.4545168274142398 0.41692731010159206 1 [{I|L}P]V{M(Oxidation (M))|F}Q 5 9 39.208 0 0 2.6405 0 0 0 897.4997540505113 897.4997540505113 17.280067976692166 0 0 0 0 0 2 0 0 [{I|L}P]V{M(Oxidation (M))|F}Q 2.6405 - 80 NaN NaN 159792.6 NaN 20180 4416 24595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24600 96.88 NaN 604180 35 0 43229 0.327 -1 0 102 568.85350044457 1135.69244795594 2 568.8536987304688 MULTI HCD FTMS 0 0 0 24599 165087.484375 0.312430960072966 1 -0.01946258544921875 1 NaN NaN 1 K{M(Oxidation (M))|F}YT{M(Oxidation (M))|F} 5 -1 13.109 0 0 1.1543 0 0 431.3387625084775 0 431.3387625084775 0 -1.0236247557243185 -1.0236247557243185 0 0 0 0 0 0 K{M(Oxidation (M))|F}YT{M(Oxidation (M))|F} 1.1543 - 545 + NaN NaN 178094.5 NaN 20181 4417 24599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24601 96.884 NaN 612710 35 0 84480 0.261 + 15693 LPEPYWIVL 9 48 565.3182281307123 1128.6219033282246 2 565.318115234375 MULTI HCD FTMS 0 0 0 24599 135680.90625 0.01905640341018578 18 -0.324066162109375 2 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 26.88365393820708 0.12808753336095696 1 W{I|L}V{I|L} 4 5 42.933 0 0 3.804 0 0 599.2956483310402 0 599.2956483310402 0 21.963950151760656 0 0 0 1.25 0 0 0 + W{I|L}V{I|L} 3.804 + + 25 NaN NaN 197424.6 NaN 20182 4417 24599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24602 96.887 NaN 368500 35 0 50355 0.261 + 18381 MPPWENIWL 9 61 593.2919270781011 1184.5693012230022 2 593.2916870117188 MULTI HCD FTMS 0 0 0 24599 118410.140625 0.4672510504017099 -1 0.0126953125 3 Unmodified _MPPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 32.78568957990786 0.09846250359632436 1 EN{I|L}W{I|L} 5 4 54.865 0 0 4.6316 0 0 511.22368056465 0 511.22368056465 0 47.875240784723374 0 0 0 1.566901560044258 0 0 0.4247425010840047 + EN{I|L}W{I|L} 4.6316 + + 97 NaN NaN 152535.7 NaN 20183 4417 24599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24603 96.891 NaN 864320 35 0 116330 0.261 + 11181 IYIWDLNNF 9 78 599.300514891365 NaN 0 599.28857421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 19.256988751693697 0.19238547928067054 1 YP{I|L}[MT]V 6 7 22.708 0 0 1.8977 0 0 166.10597137522842 323.1036471002563 489.2096184754847 0 0 0 0 0 0 0 0.7302046884880937 0 YP{I|L}[MT]V 1.8977 - 125 + NaN NaN 212496.1 NaN 20184 4417 24599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24604 96.894 NaN 107640 35 0 15846 0.261 + 33818 YLITDQAETVS 11 45 620.3082668408425 1238.601980748485 2 620.3084716796875 MULTI HCD FTMS 0 0 0 24599 33449.87109375 0.20546331734319398 -1 0.0126953125 5 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 14.405379775768559 0.3315678654765638 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 53.015 0 0 4.2803 0 0 0 598.2293184869749 598.2293184869749 47.07325943207756 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 4.2803 - 35 + NaN NaN 106214.5 NaN 20185 4417 24599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24606 96.902 NaN 1311100 35 0 332010 0.327 + 11284 IYLTFPVAMF 10 79 609.3177984242096 1216.6210439152192 2 609.3182983398438 MULTI HCD FTMS 0 0 0 24605 841415.1875 0.8308478927915508 9 -0.1513824462890625 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 121.42 0 0 9.9805 9.9805 98.682 0 0 0 22.754537344402905 106.01825829692464 22.754537344402905 52.65994091163677 0 3.0387254899964358 1.6989700043360187 1.892159058960253 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};YYVV{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[MS]|[{M(Oxidation (M))|F}A]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}[CS]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VG]{[ET]|[MV]} 9.9805;5.6521;5.282;5.1777;4.6666;4.2096;2.9814;2.6684;0.9558 +;-;-;-;-;-;-;-;- + 815 NaN NaN 281846.6 NaN 20186 4418 24605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24607 96.906 NaN 858640 35 0 163160 0.261 + 300 AFPEIFYTF 9 90 567.778799339964 1133.543045746728 2 567.7784423828125 MULTI HCD FTMS 0 0 0 24605 343295.75 0.3807171000154429 -6 0.1201324462890625 2 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 88.90359156742426 0.00455469703666567 1 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 8 7 58.247 0 0 5.1385 0 0 165.0789509503922 0 165.0789509503922 0 32.796269448807216 0 0 0 1.8204437990928106 0 0.7302046884880937 0 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 5.1385 - 1255 NaN NaN 213734.6 NaN 20187 4418 24605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24608 96.91 NaN 124570 35 0 18753 0.261 + 33819 YLITDQAETVS 11 49 620.3082668408425 1238.601980748485 2 620.8106079101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 14.405379775768559 0.3315678654765638 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 58.768 0 0 4.7447 0 0 0 598.2278536432249 598.2278536432249 39.815534464597704 0 0 0 0 1.6549471895720984 2 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 4.7447 - 37 + NaN NaN 117686 NaN 20188 4418 24605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24609 96.913 NaN 160710 35 0 14841 0.264 -1 0 52 469.8303285319772 937.6461041307545 2 469.8306579589844 MULTI HCD FTMS 0 0 0 24605 59422.515625 0.43637952331530117 -5 0.10064697265625 4 NaN NaN 1 {I|L}{I|L} 2 -1 20.573 0 0 2.1941 0 0 693.4695715595592 0 693.4695715595592 0 11.836068845642203 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L} 2.1941 - 16 NaN NaN 109360.3 NaN 20189 4418 24605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24610 96.916 NaN 191280 35 0 40282 0.261 + 6240 FPEVDVFVL 9 55 532.7866040702368 1063.5586552072734 2 532.7862548828125 MULTI HCD FTMS 0 0 0 24605 124996.015625 0.9956434233353152 -4 0.08441925048828125 5 Unmodified _FPEVDVFVL_ ENSG00000132768|ENST00000255108|DPH2;nc|ENSG00000132768|Q9BQC3-3|DPH2 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}V{I|L} 3 6 35.445 0 0 3.3327 0 0 686.3263979120815 0 686.3263979120815 0 32.346368802282015 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.3327 + + 29 NaN NaN 112876.1 NaN 20190 4418 24605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24612 96.921 NaN 3518800 35 0 643130 0.327 + 17132 LYLPSFFTY 9 66 575.7944829575671 1149.574412981934 2 575.794677734375 MULTI HCD FTMS 0 0 0 24611 2057806.25 0.28402648485787885 5 -0.08148956298828125 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 161.8943921545576 8.236690082142223E-09 1 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 93.963 0 0 8.1737 8.1737 93.899 0 0 0 20.113168458567685 36.830211427586974 20.113168458567685 14.542425094393252 0 2.6861818737241734 1.6989700043360187 1.1237125054200234 0 + + [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]P{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}SP{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}YSP{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}Y{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}SP{I|L}Y{I|L};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}YSP{I|L}Y{I|L} 8.1737;6.9087;4.4342;3.6777;3.4159;3.2148;2.4583;2.1964 +;-;-;-;-;-;-;- + 459 NaN NaN 377948.3 NaN 20191 4419 24611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24613 96.926 NaN 842800 35 0 149980 0.261 + 16351 LRSWCYKGF 9 87 580.2890580475128 1158.5635631618254 2 580.2891235351562 MULTI HCD FTMS 0 0 0 24611 205674.359375 0.5376179780090233 1 -0.019439697265625 2 Unmodified _LRSWCYKGF_ ENSG00000135912|ENST00000392102|TTLL4 15.847184025352803 0.2234401846867398 1 {I|L}VS[DN][VS]{I|L}{M(Oxidation (M))|F} 9 6 35.287 0 0 3.0457 0 0 166.03109968706036 0 166.03109968706036 0 5.281804797898232 0 0 0 0 0 0.5941876774005248 0.9757724967479859 {I|L}VS[DN][VS]{I|L}{M(Oxidation (M))|F} 3.0457 - 625 + NaN NaN 232042.7 NaN 20192 4419 24611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24614 96.929 NaN 269580 35 0 75563 0.262 + 15375 LPDFPALVL 9 33 492.7917771024737 983.5690012717474 2 492.7919616699219 MULTI HCD FTMS 0 0 0 24611 126130.828125 0.5145554390975094 1 -0.019439697265625 3 Unmodified _LPDFPALVL_ ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A 11.640296217721598 0.25978676193971967 1 V{I|L} 2 7 25.969 0 0 2.6403 0 0 753.4063513159604 0 753.4063513159604 0 21.365006360318688 0 0 0 0.5 0 0 0 + V{I|L} 2.6403 + + 8 NaN NaN 119367.5 NaN 20193 4419 24611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24615 96.932 NaN 116980 35 0 18634 0.261 + 14822 LITDILDTF 9 39 525.7894307141229 1049.5643084950457 2 525.7899780273438 MULTI HCD FTMS 0 0 0 24611 39312.55859375 0.05334817276843611 14 -0.2432708740234375 4 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 20.453626601364224 0.18364154288633264 1 {I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F} 4 5 26.198 0 0 2.4961 0 0 555.3265847266616 0 555.3265847266616 0 14.225490200071285 0 0 0 1 0 0 0 + {I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F} 2.4961 + + 15 NaN NaN 107426.3 NaN 20194 4419 24611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24616 96.936 NaN 180220 35 0 34060 0.261 -1 0 48 641.3847909797422 1280.7550290262843 2 641.385009765625 MULTI HCD FTMS 0 0 0 24611 85164.7578125 0.3849912827609862 -2 0.0416717529296875 5 NaN NaN 1 M 1 -1 2.4743 0 0 0.19319 0 0 686.3843129901036 460.30722986392817 1146.6915428540317 0 0 0 0 0 0 0 0 0 M 0.19319 - 2 + NaN NaN 121432.7 NaN 20195 4419 24611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24618 96.941 NaN 1230800 35 0 130730 0.326 + 17377 LYQILQGIVF 10 69 597.3501926626927 1192.6858323921854 2 597.3504028320312 MULTI HCD FTMS 0 0 0 24617 981588 0.43363811184872314 2 -0.02960968017578125 1 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 99.79894945604345 0.00025031564603709316 1 [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F} 10 0 + 97.15 0 0 8.1455 8.1455 90.984 0 0 0 17.102868501927873 90.49471895720984 17.102868501927873 9.164539485499262 0 2.3494850021680094 1.2218487496163564 0 1.4604093769761874 + + [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}QGV{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]GV{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QGV{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][KT]G[VP]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}[AG]GV{I|L}{M(Oxidation (M))|F};[Y{I|L}][KT]G[VP]GV{I|L}{M(Oxidation (M))|F} 8.1455;7.3771;7.0841;6.9023;6.1339;5.8409;5.3873;4.996;4.4632;3.7527 +;-;-;-;-;-;-;-;-;- + 458 NaN NaN 272165.5 NaN 20196 4420 24617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24619 96.945 NaN 1410700 35 0 443650 0.261 -1 0 83 586.7855388167187 1171.5565247002373 2 587.771728515625 MULTI HCD FTMS 0 0 0 24617 54078.078125 0.18121329131792285 6 -0.0902252197265625 2 NaN NaN 1 [Y{I|L}]{I|L} 3 -1 34.437 0 0 2.9394 0 0 0 779.302277209114 779.302277209114 18.140274682471464 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.9394 - 283 NaN NaN 302341.1 NaN 20197 4420 24617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24620 96.949 NaN 778690 35 0 135670 0.261 + 31530 VYGIFNSVLF 10 84 579.8132027837096 1157.611852634219 2 579.8130493164062 MULTI HCD FTMS 0 0 0 24617 283522.03125 0.6196163403188646 -4 0.0738067626953125 3 Unmodified _VYGIFNSVLF_ ADC-ISOC1|1|fusion;ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2 69.10491478415734 0.018645933849003846 1 SV{I|L}{M(Oxidation (M))|F} 4 6 44.284 0 0 3.8255 0 0 693.3479873209566 0 693.3479873209566 0 30.572741603978884 0 0 0 1.3807196863200843 0 0.6989700043360187 0 + SV{I|L}{M(Oxidation (M))|F} 3.8255 + + 364 NaN NaN 202370.7 NaN 20198 4420 24617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24621 96.952 NaN 675080 35 0 133250 0.261 + -1 MMCTSLHAF 9 57 565.2274121113269 1128.4402712894537 2 565.2273559570312 MULTI HCD FTMS 0 0 0 24617 151803.171875 0.5473444893456758 -1 0.019439697265625 4 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TSLHAF_ REV__ENST00000282020.8_1_4:94006286-94006370:+|nuORF 7.910154910731844 0.2910521888787154 1 A{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5443 0 0 892.3246382101553 0 892.3246382101553 0 15.523787536356577 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.5443 + + 48 + NaN NaN 191913.2 NaN 20199 4420 24617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24622 96.955 NaN 213000 35 0 8080.3 0.261 -1 0 70 486.959059115743 1457.855347947429 3 486.95928955078125 MULTI HCD FTMS 0 0 0 24617 91434.2578125 0.54987899789926 2 -0.02960968017578125 5 NaN NaN 1 PV 2 -1 8.5835 0 0 0.58878 0 0 599.4286577236611 659.2825411432249 1258.711198866886 0 0 0 0 0 0 0 0 0 PV 0.58878 - 28 + NaN NaN 121937 NaN 20200 4420 24617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24623 96.958 NaN 138800 35 0 21450 0.261 + -1 RLLCLLRFRWP 11 64 510.63433864704723 1528.8811865413418 3 510.634033203125 MULTI HCD FTMS 0 0 0 24617 33247.4609375 0.31943475846193325 2 -0.02960968017578125 6 Carbamidomethyl (C) _RLLC(Carbamidomethyl (C))LLRFRWP_ REV__ENSG00000167733|ENST00000339423|HSD11B1L;REV__ENST00000578046.1_2_19:5687695-5687953:+|nuORF;REV__ENST00000581423.1_1_19:5687386-5687953:+|nuORF;REV__nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;REV__nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;REV__nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L 0.09484139111097674 0.41850472438158626 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 0.88266 0 0 1363.8024949903636 0 1363.8024949903636 0 -5.969100130080562 -5.969100130080562 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.88266 + + 58 + NaN NaN 104020.2 NaN 20201 4420 24617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24625 96.963 NaN 180910 35 0 25204 0.327 + -1 LYCWHFYD 8 44 602.2504206287929 1202.4862883243857 2 602.2508544921875 MULTI HCD FTMS 0 0 0 24624 114004.0859375 0.25503620783140024 7 -0.10317230224609375 1 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))WHFYD_ REV__ENSG00000145536|ENST00000274181|ADAMTS16 0.7936320650641473 0.540814922690045 1 [Y{I|L}]{I|L} 3 -1 10.458 0 0 0.86966 0 0 0 810.2299461215138 810.2299461215138 6.478174818886375 0 0 0 0 0 0 0 0 [Y{I|L}]{I|L} 0.86966 - 6 NaN NaN 107839.8 NaN 20202 4421 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24627 96.97 NaN 1853100 35 0 317140 0.327 -1 0 83 572.3069438301637 1142.5993347271274 2 572.3069458007812 MULTI HCD FTMS 0 0 0 24626 1046825 0.6777489921896926 4 -0.06061553955078125 1 NaN NaN 1 [YE]{I|L}Q{M(Oxidation (M))|F}VP 7 -1 73.344 0 0 6.419 0 0 0 263.14185116683365 263.14185116683365 29.155462488490684 0 0 0 0 2.579689690656103 1.5228787452803376 2.555462187404089 0 [YE]{I|L}Q{M(Oxidation (M))|F}VP 6.419 - 911 NaN NaN 373183.1 NaN 20203 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24628 96.974 NaN 385740 35 0 15952 0.262 + 22681 QWSRLRRRAGR 11 83 481.2835464289429 1440.8288098870287 3 481.28350830078125 MULTI HCD FTMS 0 0 0 24626 231083.609375 0.5164601212781199 6 -0.0962982177734375 2 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.1097533296519684 0.4140536653900533 1 N{[HG]|PP}{[DS]|[MA]|[CV]|TT} 5 -1 12.275 0 0 0.85195 0 0 912.5239735334 0 912.5239735334 0 4.928702923165389 0 0 0 0.8807196863200843 0 0 0 N{[HG]|PP}{[DS]|[MA]|[CV]|TT} 0.85195 - 14 NaN NaN 138772.5 NaN 20204 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24629 96.978 NaN 243440 35 0 41386 0.261 -1 0 54 641.3847909797422 1280.7550290262843 2 641.385009765625 MULTI HCD FTMS 0 0 0 24626 139568.328125 0.630925174424243 1 -0.02552032470703125 3 NaN NaN 1 M 1 -1 3.9794 0 0 0.31071 0 0 686.3854627092893 460.3059481256469 1146.6914108349363 0 0 0 0 0 0 0 0 0 M 0.31071 - 6 + NaN NaN 128872.8 NaN 20205 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24630 96.981 NaN 427300 35 0 21291 0.261 + 16980 LYIGNLTWW 9 82 583.3060882237454 1164.5976235142907 2 583.80859375 MULTI HCD FTMS 0 0 0 24626 63777.15234375 0.3432014504177834 4 -0.06061553955078125 4 Unmodified _LYIGNLTWW_ ENSG00000111605|ENST00000435070|CPSF6;ENST00000547486.1_1_12:69645004-69651771:+|nuORF;ENST00000550987.5_1_12:69633426-69648902:+|nuORF;nc|ENSG00000111605|Q16630-2|CPSF6;nc|ENSG00000111605|Q16630-3|CPSF6 96.11092074494114 0.00436583732602279 1 {I|L}Y{I|L}GN{I|L}TWW 9 0 + 86.652 0 0 7.4405 7.4405 92.081 0 0 0 68.74684165050624 16.478174818886373 16.478174818886373 11.95046257204389 0 2.218765315847925 1.5228787452803376 0.6861818737241735 0.2742275032520141 + + {I|L}Y{I|L}GN{I|L}TWW;{I|L}Y{I|L}GGG{I|L}TWW;[Y{I|L}]{[QG]|[NA]}V{I|L}TWW;{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YG]{I|L}TWW;Q[{I|L}V][YG]{I|L}TWW;[Y{I|L}]{[RE]|[WV]}{[NV]|[RG]}W[VS];{I|L}YMT{I|L}[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[Y{I|L}]{[RE]|[WV]}[YK]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[WT]|[RM]}[KQ]{I|L}T[{M(Oxidation (M))|F}E]{I|L} 7.4405;6.4143;4.7091;4.3137;3.3866;2.7425;2.0366;1.1277;0.10348 +;-;-;-;-;-;-;-;- + 487 + NaN NaN 149228.8 NaN 20206 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24631 96.984 NaN 254860 35 0 68567 0.261 + 988 AYFNFPELL 9 49 557.2843863626786 1112.554219792157 2 557.284423828125 MULTI HCD FTMS 0 0 0 24626 86950.1875 0.0011363268806136649 68 -1.3722991943359375 5 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 39.94969957227396 0.06557568441294001 1 N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 6 3 43.862 0 0 3.9424 0 0 381.16606337715 0 381.16606337715 0 36.871987629411294 0 0 0 1.7302046884880937 0 0 0.805462187404089 + N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 3.9424 + + 31 NaN NaN 117021.7 NaN 20207 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24632 96.987 NaN 139930 35 0 27393 0.264 + 16361 LSAPPNLWIVT 11 36 404.23389781939716 NaN 0 404.24615478515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LSAPPNLWIVT_ REV__ENSG00000156299|ENST00000541036|TIAM1;REV__nc|ENSG00000156299|Q13009-2|TIAM1 1.214830529360525 0.33867401910978034 1 VY 2 -1 4.464 0 0 0.55353 0 0 159.17027201866125 382.11481653385005 541.2850885525113 0 0 0 0 0 0 0 0 0 VY 0.55353 - 4 + NaN NaN 104924.8 NaN 20208 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24633 96.991 NaN 322880 35 0 45154 0.261 + 15893 LPLLLDFSW 9 58 552.3106719323575 1102.606790931515 2 552.8126831054688 MULTI HCD FTMS 0 0 0 24626 33789.90625 0.42647998912182716 4 -0.06061553955078125 7 Unmodified _LPLLLDFSW_ REV__ENSG00000120868|ENST00000551964|APAF1;REV__nc|ENSG00000120868|O14727-2|APAF1;REV__nc|ENSG00000120868|O14727-3|APAF1;REV__nc|ENSG00000120868|O14727-4|APAF1 18.13498045792455 0.20367413111508956 1 {I|L}[C(Carbamidomethyl (C))N]Q{M(Oxidation (M))|F}V 6 -1 43.901 0 0 3.9816 0 0 0 338.2080643560913 338.2080643560913 20.612431371158735 0 0 0 0 1.8494850021680094 0 0 0 {I|L}[C(Carbamidomethyl (C))N]Q{M(Oxidation (M))|F}V 3.9816 - 135 + NaN NaN 129655.5 NaN 20209 4422 24626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24636 97.002 NaN 10521000 35 0 3171000 0.327 + 4473 EYIQFVPLL 9 84 561.3157167584666 1120.616880583733 2 561.3162841796875 MULTI HCD FTMS 0 0 0 24635 11408571 0.7622555782917163 6 -0.10977935791015625 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 126.56589448801843 0.0008132384440316759 1 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 102.63 0 0 9.1587 9.1587 93.134 0 0 0 16.158854210789414 16.478174818886373 16.158854210789414 9.208187539523749 0 2.610924374808178 0 2.7931576817365436 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[Q{I|L}]YE{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V]QP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V][AG]P{I|L}{I|L};[YE]{I|L}Q{M(Oxidation (M))|F}V{I|L}P{I|L};[Q{I|L}]Y{M(Oxidation (M))|F}VEP{I|L}{I|L};[{I|L}P]V{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}AA{I|L}{I|L};[{I|L}P]{I|L}V{M(Oxidation (M))|F}QEY{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}V{I|L}P{I|L} 9.1587;8.337;7.7168;5.678;4.8562;4.6218;4.1763;3.8252;3.636;3.5098 +;-;-;-;-;-;-;-;-;- + 1065 NaN NaN 905375.5 NaN 20210 4424 24635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24637 97.007 NaN 689600 35 0 119220 0.261 + 35818 YYPSFLPYF 9 81 598.786969100546 1195.559385267892 2 598.787109375 MULTI HCD FTMS 0 0 0 24635 507065.53125 1 0 0 2 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 77.98433622928108 0.006504613272346738 1 YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F} 9 0 + 80.894 0 0 6.7662 6.7662 92.972 0 0 0 18.99288766643714 16.478174818886373 16.478174818886373 25.810384486277798 0 2.2302046884880937 2 0.75 0 + + YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F};YY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}PY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]{[HG]|PP}PY{M(Oxidation (M))|F} 6.7662;4.6074;3.2103 +;-;- + 337 NaN NaN 189922.8 NaN 20211 4424 24635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24639 97.011 NaN 671890 35 0 111110 0.327 + 35819 YYPSFLPYF 9 69 598.786969100546 1195.559385267892 2 598.7872924804688 MULTI HCD FTMS 0 0 0 24638 379611.78125 0.7486444213910468 1 -0.01923370361328125 1 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 77.98433622928108 0.006504613272346738 1 YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F} 9 0 + 79.543 0 0 6.6532 6.6532 93.798 0 0 0 19.20432836127297 16.478174818886373 16.478174818886373 46.121506059964545 0 2.2614393726401687 1.6989700043360187 0.805462187404089 0 + + YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F};YY{[QN]|[E{I|L}]|[KN]}[W{I|L}]Y{M(Oxidation (M))|F};[Y{I|L}][YE][W{I|L}]Y{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[Y{I|L}][WY]Y{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YY[W{I|L}]Y{M(Oxidation (M))|F} 6.6532;2.7955;0.37155;0.32876;0.15803 +;-;-;-;- + 238 NaN NaN 192436.9 NaN 20212 4425 24638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24640 97.016 NaN 284110 35 0 48559 0.261 + 18382 MPPWENIWL 9 54 593.2919270781011 1184.5693012230022 2 593.2927856445312 MULTI HCD FTMS 0 0 0 24638 102578.3046875 0.40477800601092745 7 -0.13993072509765625 2 Unmodified _MPPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 22.736283301280096 0.1639198954644489 1 EN{I|L}W{I|L} 5 4 48.315 0 0 4.0787 0 0 511.22691542793126 0 511.22691542793126 0 41.32576888900239 0 0 0 0.805462187404089 0 0 0.3807196863200844 + EN{I|L}W{I|L} 4.0787 + + 50 NaN NaN 127734 NaN 20213 4425 24638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24641 97.019 NaN 301940 35 0 35196 0.262 + 11729 KDEKRKLERQR 11 57 495.95884264936836 1484.8546985483051 3 496.2933654785156 MULTI HCD FTMS 0 0 0 24638 56778.46875 0.7367099847947288 1 -0.01923370361328125 3 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 1.3296431237094175 0.4130893034510334 1 [{I|L}P]V{M(Oxidation (M))|F}G{[YC]|[HE]}P 8 10 38.338 0 0 2.5819 0 0 0 605.3945010267926 605.3945010267926 20.62519007632506 0 0 0 0 0 2 0.8494850021680094 0 [{I|L}P]V{M(Oxidation (M))|F}G{[YC]|[HE]}P 2.5819 - 84 NaN NaN 130908.7 NaN 20214 4425 24638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24642 97.023 NaN 143780 35 0 17440 0.261 + 6892 FPVEFLIQV 9 41 546.3105221327451 1090.60649133229 2 546.3112182617188 MULTI HCD FTMS 0 0 0 24638 65913.125 0.290938634420768 7 -0.13993072509765625 4 Unmodified _FPVEFLIQV_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9 13.90604991867851 0.24021115267848145 1 {I|L}QV 3 6 36.198 0 0 3.3191 0 0 732.3855268581015 0 732.3855268581015 0 25.228787452803374 0 0 0 1 0 0 0 + {I|L}QV 3.3191 + + 37 NaN NaN 107315.4 NaN 20215 4425 24638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24643 97.026 NaN 88669 35 0 11212 0.261 + 3649 ELKKQRTE 8 47 516.294308592554 NaN 0 516.3096923828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ELKKQRTE_ REV__ENSG00000211455|ENST00000389032|STK38L 4.3292370932331545 0.38822285293237185 1 Y 1 -1 3.0989 0 0 0.3007 0 0 626.3683280231954 238.11921106510002 864.4875390882954 0 0 0 0 0 0 0 0 0 Y 0.3007 - 3 + NaN NaN 91833.3 NaN 20216 4425 24638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24645 97.031 NaN 1156400 35 0 315920 0.327 + 11285 IYLTFPVAMF 10 74 609.3177984242096 1216.6210439152192 2 609.318603515625 MULTI HCD FTMS 0 0 0 24644 450363.0625 0.4447069734752969 17 -0.369598388671875 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 121.21 0 0 9.9631 9.9631 98.501 0 0 0 20.993624753846092 107.31196758040872 20.993624753846092 47.98577533287428 0 3.094187677400525 1.5228787452803376 1.9916440611282624 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};YYVV{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[MS]|[{M(Oxidation (M))|F}A]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}[CS]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{[DS]|[MA]|[CV]|TT}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F} 9.9631;6.0189;5.5671;5.1604;4.5674;4.3791;3.0566;2.7436 +;-;-;-;-;-;-;- + 662 NaN NaN 266575.4 NaN 20217 4426 24644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24646 97.035 NaN 2241500 35 0 217960 0.264 + 12414 KPGQQKRRQR 10 194 427.9253748937348 1280.7542952814044 3 427.92547607421875 MULTI HCD FTMS 0 0 0 24644 196388.125 0.7939646046086161 4 -0.08160400390625 2 Unmodified _KPGQQKRRQR_ REV__ENSG00000129347|ENST00000312962|KRI1;REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF;REV__ENST00000537363.5_1_19:10664629-10670250:-|nuORF 1.4819007175156935 0.4674597685733628 1 Y{I|L}{[HG]|PP}{[DS]|[MA]|[CV]|TT} 6 -1 15.295 0 0 1.1942 0 0 590.351366111525 0 590.351366111525 0 7.7660653477072135 0 0 0 0.4124379954164593 0 0 0 Y{I|L}{[HG]|PP}{[DS]|[MA]|[CV]|TT} 1.1942 - 77 NaN NaN 422046.2 NaN 20218 4426 24644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24647 97.039 NaN 219810 35 0 37189 0.261 + 12429 KPRKRRRTNS 10 51 433.60073339969773 1297.7803707992932 3 433.6009826660156 MULTI HCD FTMS 0 0 0 24644 89931.4140625 0.9387514559909681 1 -0.01950836181640625 3 Unmodified _KPRKRRRTNS_ ENSG00000158636|ENST00000695367|EMSY;ENST00000427574.6_1_11:76157982-76207767:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY 0.15932191953741626 0.4744603884079788 1 D 1 10 9.2917 0 0 0.71597 0 0 61.0549797549889 1118.6531474177602 1179.708127172749 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.71597 - 6 + NaN NaN 127154 NaN 20219 4426 24644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24648 97.042 NaN 127860 35 0 14994 0.261 + 7627 FYILSPLNL 9 48 540.310237432683 1078.605921932166 2 540.3104858398438 MULTI HCD FTMS 0 0 0 24644 32585.287109375 0.3107078305523149 -4 0.06061553955078125 4 Unmodified _FYILSPLNL_ ENSG00000197070|ENST00000371421|ARRDC1;ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF 18.1463463914782 0.20357593197100715 1 D[{I|L}P]N{I|L} 5 5 26.51 0 0 2.4578 0 0 508.3032704084 0 508.3032704084 0 11.025684359364405 0 0 0 0.5 0 0.3807196863200844 0 D[{I|L}P]N{I|L} 2.4578 - 16 NaN NaN 110753.6 NaN 20220 4426 24644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24649 97.045 NaN 108350 35 0 9016.2 0.261 + 27632 TAISLFYEL 9 40 528.7846866813542 NaN 0 528.7740478515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 6.723162845929126 0.26266733336404485 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.241 0 0 485.2867673062645 420.1774080865844 905.4641753928489 0 0 0 0 0 0.7614393726401688 0 0 0 + {M(Oxidation (M))|F} 1.241 + + 11 + NaN NaN 97229.2 NaN 20221 4426 24644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24651 97.05 NaN 1220100 35 0 218930 0.327 + 17133 LYLPSFFTY 9 67 575.7944829575671 1149.574412981934 2 575.794677734375 MULTI HCD FTMS 0 0 0 24650 708861.875 0.09783989459941386 13 -0.26764678955078125 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 154.46347324262513 4.107785341423729E-06 1 [Y{I|L}]{I|L}PAY{M(Oxidation (M))|F}TY 9 2 + 92.145 0 0 8.0156 8.0156 96.594 0 0 0 8.674931603502941 64.06295947543775 8.674931603502941 60.83613437787733 0 2.805462187404089 1.5228787452803376 0.4247425010840047 0 [Y{I|L}]{I|L}PAY{M(Oxidation (M))|F}TY;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}Y[PS]{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[QA]T{M(Oxidation (M))|F}[{I|L}P][{I|L}P]TY;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}Y{I|L};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}Y[PS]{I|L}Y{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}Y{I|L} 8.0156;2.7235;2.6392;2.5121;2.1198;1.3111;1.2268;1.0997 -;-;-;-;-;-;-;- 479 NaN NaN 270849.2 NaN 20222 4427 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24652 97.055 NaN 1004300 35 0 225470 0.261 + 301 AFPEIFYTF 9 77 567.778799339964 1133.543045746728 2 567.7791137695312 MULTI HCD FTMS 0 0 0 24650 548633.0625 0.6084374435966401 3 -0.06209564208984375 2 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 100.37149154755038 0.004254194004462789 1 AHA{I|L}{M(Oxidation (M))|F}YT{M(Oxidation (M))|F} 8 3 63.907 0 0 5.6378 0 0 165.08073700040887 0 165.08073700040887 0 47.977372199242296 0 0 0 1.8737125054200234 0 1.0044321917401078 0 AHA{I|L}{M(Oxidation (M))|F}YT{M(Oxidation (M))|F} 5.6378 - 509 + NaN NaN 227425.3 NaN 20223 4427 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24653 97.058 NaN 218800 35 0 22840 0.262 -1 0 66 469.8303285319772 937.6461041307545 2 469.8302001953125 MULTI HCD FTMS 0 0 0 24650 78028.7578125 0.5730176816139099 4 -0.08498382568359375 3 NaN NaN 1 {I|L}{I|L} 2 -1 18.271 0 0 1.9486 0 0 693.4718487136201 0 693.4718487136201 0 7.284948323555174 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 1.9486 - 60 NaN NaN 113975.6 NaN 20224 4427 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24654 97.062 NaN 173240 35 0 42325 0.261 + 6241 FPEVDVFVL 9 45 532.7866040702368 1063.5586552072734 2 532.7860107421875 MULTI HCD FTMS 0 0 0 24650 98065.25 0.7811290682509187 5 -0.10118865966796875 4 Unmodified _FPEVDVFVL_ ENSG00000132768|ENST00000255108|DPH2;nc|ENSG00000132768|Q9BQC3-3|DPH2 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}V{I|L} 3 6 36.198 0 0 3.4035 0 0 686.3280081057113 0 686.3280081057113 0 32.70303756120384 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.4035 + + 11 NaN NaN 108753.3 NaN 20225 4427 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24656 97.067 NaN 411150 35 0 36964 0.327 + 17378 LYQILQGIVF 10 56 597.3501926626927 1192.6858323921854 2 597.3502197265625 MULTI HCD FTMS 0 0 0 24655 253717.015625 0.1120850780566979 10 -0.20566558837890625 1 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 45.69961567697781 0.09594615698576985 1 {I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 7 3 56.458 0 0 4.7337 0 0 404.2052174298844 0 404.2052174298844 0 52.478882258621695 0 0 0 2.3494850021680094 0 0 0.4247425010840047 + {I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 4.7337 + + 65 NaN NaN 154473.7 NaN 20226 4428 24655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24657 97.071 NaN 92668 35 0 20622 0.264 + 8109 GLFAGECF 8 38 422.1885560487703 842.3625591643406 2 422.1883850097656 MULTI HCD FTMS 0 0 0 24655 103817.671875 1 0 0 2 Unmodified _GLFAGECF_ REV__ENST00000541956.5_1_12:6940459-6946454:+|nuORF 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.555 0 0 677.28374554305 0 677.28374554305 0 2.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.555 + + 6 + NaN NaN 94143.3 NaN 20227 4428 24655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24658 97.075 NaN 117730 35 0 18088 0.261 + 35975 YYVSKIVI 8 32 492.7917771024737 983.5690012717474 2 492.7923583984375 MULTI HCD FTMS 0 0 0 24655 57917.09375 0.23627495394106585 10 -0.20566558837890625 3 Unmodified _YYVSKIVI_ ENSG00000189099|ENST00000455694|PRSS48 12.531546534597751 0.5015908124873912 1 V{I|L} 2 6 25.969 0 0 2.6403 0 0 753.4019032209 0 753.4019032209 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{I|L} 2.6403 + + 7 NaN NaN 103470.7 NaN 20228 4428 24655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24659 97.078 NaN 78234 35 0 10808 0.261 + 33820 YLITDQAETVS 11 34 620.3082668408425 1238.601980748485 2 620.3080444335938 MULTI HCD FTMS 0 0 0 24655 38494.46484375 0.23644935503579978 10 -0.20566558837890625 4 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 7.101721422024254 0.3877749288398915 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 46.466 0 0 3.7515 0 0 0 598.2288302057249 598.2288302057249 46.46591250700361 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 3.7515 - 10 + NaN NaN 102616.4 NaN 20229 4428 24655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24660 97.081 NaN 228850 35 0 40297 0.262 + 10695 IPWDDLIAL 9 45 528.2921668634168 1054.5697807936335 2 528.2915649414062 MULTI HCD FTMS 0 0 0 24655 67173.2734375 0.047998343282184996 -11 0.18701934814453125 5 Unmodified _IPWDDLIAL_ ENSG00000160294|ENST00000291688|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP 11.640296217721598 0.25978676193971967 1 V{I|L}A{I|L} 4 6 38.928 0 0 3.6914 0 0 640.2704945294937 0 640.2704945294937 0 24.323806533759438 0 0 0 1 0 0 0 V{I|L}A{I|L} 3.6914 - 39 NaN NaN 113266 NaN 20230 4428 24655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24661 97.085 NaN 84867 35 0 6656.7 0.261 + 31924 VYNSFKYLF 9 43 590.8039769226119 1179.5934009120238 2 590.8048706054688 MULTI HCD FTMS 0 0 0 24655 28812.62890625 0.46933507746698394 4 -0.08501434326171875 6 Unmodified _VYNSFKYLF_ tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1 9.38312468134398 0.279288223203164 1 {I|L}{M(Oxidation (M))|F} 2 7 23.711 0 0 2.0101 0 0 901.4320751176358 0 901.4320751176358 0 20.9471653193118 0 0 0 0.4247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.0101 + + 9 NaN NaN 102091.7 NaN 20231 4428 24655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24663 97.09 NaN 618500 35 0 50623 0.327 + 31531 VYGIFNSVLF 10 92 579.8132027837096 1157.611852634219 2 579.8134155273438 MULTI HCD FTMS 0 0 0 24662 185935 0.4063471319292337 5 -0.1009674072265625 1 Unmodified _VYGIFNSVLF_ ADC-ISOC1|1|fusion;ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2 78.7280429016045 0.0072433801744089844 1 T[DN]SV{I|L}{M(Oxidation (M))|F} 7 5 49.696 0 0 4.293 0 0 363.21077162910314 0 363.21077162910314 0 38.99494425044772 0 0 0 1.089136830878453 0 0.6505149978319906 1.110924374808178 T[DN]SV{I|L}{M(Oxidation (M))|F} 4.293 - 735 NaN NaN 174662.5 NaN 20232 4429 24662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24664 97.094 NaN 403270 35 0 102940 0.261 -1 GMFCAAFYF 9 46 565.2274121113269 1128.4402712894537 2 565.2275390625 MULTI HCD FTMS 0 0 0 24662 169697.25 0.6118637278613549 8 -0.15633392333984375 2 Carbamidomethyl (C),Oxidation (M) _GM(Oxidation (M))FC(Carbamidomethyl (C))AAFYF_ ENSG00000185737|ENST00000372141|NRG3;ENST00000555784.5_1_10:84711250-84718713:+|nuORF;nc|ENSG00000185737|P56975-2|NRG3;nc|ENSG00000185737|P56975-3|NRG3;nc|ENSG00000185737|P56975|NRG3 9.347437153973935 0.2795965555214564 1 A{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5443 0 0 892.3242109640615 0 892.3242109640615 0 16.00833760139686 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.5443 + + 26 + NaN NaN 141334.1 NaN 20233 4429 24662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24665 97.098 NaN 341450 35 0 45173 0.261 + 33815 YLIQQCYAGN 10 65 586.7744531257288 NaN 0 586.7855834960938 PEAK HCD FTMS 0 0 0 24662 6408.84716796875 0.8072256657205085 1 -0.02277374267578125 3 Unmodified _YLIQQCYAGN_ REV__tr|U7T8J6|U7T8J6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00075PE=4SV=1 7.289230182591677 0.3339457182549222 1 {I|L} 1 -1 10.485 0 0 0.89494 0 0 782.3031715892831 273.12416483704965 1055.4273364263327 0 0 0 0 0 0.5 0 0 0 {I|L} 0.89494 + + 51 + NaN NaN 133837.9 NaN 20234 4429 24662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24666 97.101 NaN 143730 35 0 5457 0.262 + 5582 FLNRRRRRER 10 61 486.959059115743 1457.855347947429 3 486.958984375 MULTI HCD FTMS 0 0 0 24662 57021.11328125 0.34292084149128865 11 -0.22832489013671875 4 Unmodified _FLNRRRRRER_ ENSG00000150637|ENST00000582621|CD226 0.15932191953741626 0.4744603884079788 1 {M(Oxidation (M))|F} 1 9 2.2185 0 0 0.15217 0 0 860.504470117154 447.2580660455688 1307.7625361627229 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.15217 + + 12 + NaN NaN 101082.1 NaN 20235 4429 24662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24667 97.104 NaN 86196 35 0 11430 0.261 + 2961 DYVSIINYL 9 27 550.2871708920275 1098.5597888508548 2 550.28759765625 MULTI HCD FTMS 0 0 0 24662 29319.892578125 0.48263656958669615 -2 0.0393218994140625 5 Unmodified _DYVSIINYL_ ENSG00000185900|ENST00000331373|POMK 22.736283301280096 0.1639198954644489 1 {I|L}NY{I|L} 4 5 44.68 0 0 4.0672 0 0 577.2748280255875 0 577.2748280255875 0 44.680475292681265 0 0 0 1.4247425010840047 0 0 0 + {I|L}NY{I|L} 4.0672 + + 19 NaN NaN 93799 NaN 20236 4429 24662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24668 97.108 NaN 72283 35 0 6970.5 0.261 + 14823 LITDILDTF 9 34 525.7894307141229 1049.5643084950457 2 525.7894287109375 MULTI HCD FTMS 0 0 0 24662 21133.357421875 0.028678520128133808 21 -0.4583892822265625 6 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 10.823927491677226 0.26684000660059787 1 {I|L} 1 8 15.797 0 0 1.5051 0 0 381.1538990672257 552.3047554495688 933.4586545167945 0 0 0 0 0 0.8807196863200843 0 0 0 + {I|L} 1.5051 + + 3 + NaN NaN 87425.1 NaN 20237 4429 24662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24670 97.112 NaN 623400 35 0 106060 0.327 + -1 QLMTNVVPLL 10 72 572.3269559890853 NaN 0 572.3072509765625 PEAK HCD FTMS 0 0 0 24669 8448.2373046875 1 0 0 1 Oxidation (M) _QLM(Oxidation (M))TNVVPLL_ REV__GCC2|p.I1642V|1|0.07|ENSG00000135968|chr2:108499694-108499694|A/G|missense_variant 7.289230182591677 0.3339457182549222 1 {I|L}Q{M(Oxidation (M))|F}VP 5 -1 17.423 0 0 1.5248 0 0 292.146267339545 263.1375826471313 555.2838499866763 0 0 0 0 0 0 0 0 0 {I|L}Q{M(Oxidation (M))|F}VP 1.5248 - 125 + NaN NaN 180570.8 NaN 20238 4430 24669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24671 97.117 NaN 298000 35 0 14456 0.262 + 23233 RGARRRLRSWQ 11 74 481.2835464289429 1440.8288098870287 3 481.2834777832031 MULTI HCD FTMS 0 0 0 24669 146821.28125 0.3281381008617196 14 -0.314239501953125 2 Unmodified _RGARRRLRSWQ_ ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.1097533296519684 0.4140536653900533 1 K 1 11 5.0886 0 0 0.35317 0 0 982.5566747198887 327.14557825260005 1309.7022529724888 0 0 0 0 0 0.5 0 0 0 K 0.35317 - 14 + NaN NaN 124480.7 NaN 20239 4430 24669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24672 97.12 NaN 83970 35 0 6208.6 0.261 -1 0 47 641.3847909797422 1280.7550290262843 2 641.3848876953125 MULTI HCD FTMS 0 0 0 24669 85750.046875 0.3876371094238641 9 -0.1859588623046875 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96695.9 NaN 20240 4430 24669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24673 97.124 NaN 621430 35 0 135200 0.263 + 6912 FPVFATVIL 9 53 503.80223718401805 1005.5899214348361 2 503.8023986816406 MULTI HCD FTMS 0 0 0 24669 316090.21875 0.18259755295243774 -9 0.1490936279296875 4 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 50.855029805455786 0.030374663808198754 1 CTV{I|L}{I|L} 5 5 52.92 0 0 5.2625 0 0 458.27302748847814 0 458.27302748847814 0 45.929862658764264 0 0 0 1.1237125054200234 0 0.8494850021680094 0 CTV{I|L}{I|L} 5.2625 - 153 NaN NaN 178771.1 NaN 20241 4430 24669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24674 97.127 NaN 307980 35 0 82135 0.261 -1 0 49 586.7855388167187 1171.5565247002373 2 587.7711791992188 MULTI HCD FTMS 0 0 0 24669 17961.5078125 0.06018823265523934 15 -0.3404388427734375 5 NaN NaN 1 [Y{I|L}]{I|L} 3 -1 34.437 0 0 2.9394 0 0 0 779.3024407981467 779.3024407981467 17.447274948966935 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.9394 - 17 NaN NaN 128360.3 NaN 20242 4430 24669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24675 97.13 NaN 250530 35 0 28117 0.261 + 15853 LPLAFEFDPEL 11 42 645.8342921869574 1289.6540314407148 2 646.3360595703125 MULTI HCD FTMS 0 0 0 24669 73325.3671875 0.5156276318682387 -3 0.06209564208984375 6 Unmodified _LPLAFEFDPEL_ ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10 45.739877483867886 0.09998344372470726 1 E{M(Oxidation (M))|F}DPE{I|L} 6 5 56.375 0 0 4.3713 0 0 541.3264810560845 0 541.3264810560845 0 40.17728766960431 0 0 0 2 0 0 0 + E{M(Oxidation (M))|F}DPE{I|L} 4.3713 + + 96 NaN NaN 120716.8 NaN 20243 4430 24669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24677 97.135 NaN 2079700 35 0 636600 0.327 + 4474 EYIQFVPLL 9 78 561.3157167584666 1120.616880583733 2 561.3160400390625 MULTI HCD FTMS 0 0 0 24676 1838886.75 0.12286391372190476 13 -0.291351318359375 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 103.35351024395868 0.004027461563756449 1 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 99.747 0 0 8.9011 8.9011 94.669 0 0 0 23.839256468719157 16.478174818886373 16.478174818886373 13.015384402724592 0 2.6861818737241734 0 2.048455006504028 0.3807196863200844 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[Q{I|L}][YE]{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}Q{M(Oxidation (M))|F}V{I|L}P{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}V{I|L}P{I|L};[YE]{I|L}Q[{I|L}P][{M(Oxidation (M))|F}V]{I|L};[{I|L}P]{I|L}V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YE]{I|L} 8.9011;7.7397;6.7738;4.5404;3.7187;2.8712;2.2423 +;-;-;-;-;-;- + 352 NaN NaN 403936.8 NaN 20244 4431 24676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24678 97.14 NaN 155400 35 0 29822 0.261 + 74 ADFLAEIEAL 10 43 546.2844745511493 1090.5543961690985 2 546.2846069335938 MULTI HCD FTMS 0 0 0 24676 57160.6640625 0.2171509209384754 -5 0.1044921875 2 Unmodified _ADFLAEIEAL_ ENSG00000101782|ENST00000339486|RIOK3;nc|ENSG00000101782|O14730-2|RIOK3 29.84058131909904 0.23356904650364865 1 {I|L}EADEA{I|L} 7 6 55.253 0 0 5.0665 0 0 331.17369277168126 0 331.17369277168126 0 44.28411676657959 0 0 0 1.3807196863200843 0 0 0 {I|L}EADEA{I|L} 5.0665 - 204 NaN NaN 106069.5 NaN 20245 4431 24676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24679 97.143 NaN 153680 35 0 15045 0.261 + 7005 FPWRLPRG 8 42 514.79311989647 1027.5716868597399 2 514.7940673828125 MULTI HCD FTMS 0 0 0 24676 92126.765625 0.26366612673386447 -8 0.13958740234375 3 Unmodified _FPWRLPRG_ ENSG00000171798|ENST00000304613|KNDC1 9.347437153973935 0.5250182646323369 1 TA{M(Oxidation (M))|F}VPE 6 7 40.394 0 0 3.931 0 0 365.2262421877154 0 365.2262421877154 0 24.820618910682484 0 0 0 0.9247425010840047 0 0 0 TA{M(Oxidation (M))|F}VPE 3.931 - 38 NaN NaN 106396.2 NaN 20246 4431 24676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24680 97.147 NaN 73889 35 0 8436.1 0.261 -1 FVCCWCVRM 9 27 602.2504206287929 1202.4862883243857 2 602.2506713867188 MULTI HCD FTMS 0 0 0 24676 32007.166015625 0.07160257614389566 17 -0.3506622314453125 4 Carbamidomethyl (C) _FVCCWC(Carbamidomethyl (C))VRM_ chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|47 0.5247636613948944 0.34703895399870666 1 P 1 -1 3.9794 0 0 0.33093 0 0 265.99502963473566 836.4150484674436 1102.4100781021793 0 0 0 0 0 0 0 0 0 P 0.33093 - 1 + NaN NaN 90760.8 NaN 20247 4431 24676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24682 97.152 NaN 269390 35 0 53931 0.327 + 319 AFYHRYYH 8 46 578.7698386886759 1155.5251244441517 2 578.7704467773438 MULTI HCD FTMS 0 0 0 24681 81086.359375 0.6074016826677172 8 -0.1664581298828125 1 Unmodified _AFYHRYYH_ ENSG00000158008|ENST00000374280|EXTL1 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F}[YK]T{M(Oxidation (M))|F} 5 6 24.314 0 0 2.1041 0 0 451.172166892775 0 451.172166892775 0 21.2149861442097 0 0 0 1.1382104921644451 0 0 0 {M(Oxidation (M))|F}[YK]T{M(Oxidation (M))|F} 2.1041 - 28 NaN NaN 113050.2 NaN 20248 4432 24681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24683 97.156 NaN 219980 35 0 32879 0.261 + 35820 YYPSFLPYF 9 50 598.786969100546 1195.559385267892 2 598.7872314453125 MULTI HCD FTMS 0 0 0 24681 110613.625 0.21814463453534144 8 -0.1664581298828125 2 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 28.486842064014134 0.11819662193267319 1 V[MT]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 7 5 32.491 0 0 2.7177 0 0 326.12544448066564 0 326.12544448066564 0 23.53871964321762 0 0 0 0.9247425010840047 0 0.4247425010840047 0 V[MT]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 2.7177 - 70 NaN NaN 117661.5 NaN 20249 4432 24681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24684 97.16 NaN 154460 35 0 35724 0.261 + 989 AYFNFPELL 9 47 557.2843863626786 1112.554219792157 2 557.285400390625 MULTI HCD FTMS 0 0 0 24681 47442.71875 0.0006200151851888638 78 -1.542633056640625 3 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 13.90604991867851 0.24021115267848145 1 W{M(Oxidation (M))|F}{I|L}AE[YT]A{I|L} 9 8 + 26.628 0 0 2.3935 2.3935 87.349 0 0 0 13.217196696094437 0.9666495944125622 0.9666495944125622 26.628487329057155 0 0.3494850021680094 0 0 0 W{M(Oxidation (M))|F}{I|L}AE[YT]A{I|L} 2.3935 - 62 + NaN NaN 112362.1 NaN 20250 4432 24681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24686 97.164 NaN 559370 35 0 149060 0.327 + 11286 IYLTFPVAMF 10 52 609.3177984242096 1216.6210439152192 2 609.3179931640625 MULTI HCD FTMS 0 0 0 24685 332279.75 0.32810666387549997 24 -0.5505752563476562 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 123.27 0 0 10.132 10.132 98.695 0 0 0 22.754537344402905 112.29995346516773 22.754537344402905 49.574484699911565 0 3.1237125054200234 1.6989700043360187 1.9916440611282626 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10.132;6.0573;5.2327;4.5917 +;-;-;- + 258 NaN NaN 165322.3 NaN 20251 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24687 97.169 NaN 200620 35 0 32861 0.261 + 35821 YYPSFLPYF 9 51 598.786969100546 1195.559385267892 2 598.7868041992188 MULTI HCD FTMS 0 0 0 24685 85034.625 0.16769947819244518 9 -0.21302032470703125 2 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 36.04419817259434 0.08350412372117409 1 YYV{I|L} 4 6 42.224 0 0 3.5317 0 0 0 654.2565336961457 654.2565336961457 33.2711470149615 0 0 0 0 1.3807196863200843 1.5228787452803376 0 0 YYV{I|L} 3.5317 - 90 + NaN NaN 112201.5 NaN 20252 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24688 97.172 NaN 129340 35 0 17959 0.261 + 14633 LFYTVINPL 9 45 540.310237432683 1078.605921932166 2 540.3101806640625 MULTI HCD FTMS 0 0 0 24685 81571.4609375 0.7778016985948738 3 -0.06201171875 3 Unmodified _LFYTVINPL_ ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 13.90604991867851 0.24021115267848145 1 D 1 9 12.474 0 0 1.1565 0 0 455.27430348471245 505.2824801080688 960.5567835927812 0 0 0 0 0 0.5 0 0.3494850021680094 0 D 1.1565 - 9 + NaN NaN 98645.6 NaN 20253 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24689 97.176 NaN 52075 35 0 7253.7 0.262 + -1 HHMREQAIDR 10 35 436.87960352928394 1307.6169811880518 3 436.87933349609375 MULTI HCD FTMS 0 0 0 24685 13911.3955078125 0.42363766706235173 1 -0.02619171142578125 4 Oxidation (M) _HHM(Oxidation (M))REQAIDR_ REV__ENSG00000148400|ENST00000651671|NOTCH1 0.776531954647913 0.4711933975711956 1 N 1 -1 2.4743 0 0 0.18922 0 0 871.6700645394175 318.88569055728755 1190.555755096705 0 0 0 0 0 0 0 0 0 N 0.18922 - 1 + NaN NaN 83165.1 NaN 20254 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24690 97.179 NaN 63962 35 0 6657.3 0.261 + 35521 YYGGQWFLF 9 38 590.7765784835099 1179.5386040338196 2 590.7763671875 MULTI HCD FTMS 0 0 0 24685 6525.6181640625 0.041008634612525734 -6 0.11409759521484375 5 Unmodified _YYGGQWFLF_ ENST00000455359.5_2_22:35653519-35659991:+|nuORF 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.0688 0 0 754.3082245975621 0 754.3082245975621 0 29.20818753952375 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.0688 + + 10 NaN NaN 94608.5 NaN 20255 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24691 97.182 NaN 68475 35 0 19379 0.261 + -1 KRRQLCVRKLM 11 34 510.6341977028079 1528.8807637086238 3 510.63446044921875 MULTI HCD FTMS 0 0 0 24685 33522.1640625 0.5283303112126577 -10 0.168701171875 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104589.3 NaN 20256 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24692 97.186 NaN 74418 35 0 7030.8 0.261 -1 CIRMFVIF 8 43 543.287354985979 NaN 0 543.2870483398438 PEAK HCD FTMS 0 0 0 24685 11674.943359375 0.26293552646742896 6 -0.1339569091796875 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))IRMFVIF_ chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|44 19.438996006549623 0.38500361301801034 1 {M(Oxidation (M))|F} 1 -1 16.237 0 0 1.4971 0 0 377.2303973725455 557.2362154596311 934.4666128321767 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F} 1.4971 + + 7 + NaN NaN 95374.1 NaN 20257 4433 24685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24694 97.191 NaN 784620 35 0 180370 0.327 + 302 AFPEIFYTF 9 72 567.778799339964 1133.543045746728 2 567.7791748046875 MULTI HCD FTMS 0 0 0 24693 478333.53125 0.5304748306894165 10 -0.23604583740234375 1 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 100.37149154755038 0.004254194004462789 1 AHA{I|L}{M(Oxidation (M))|F}YT{M(Oxidation (M))|F} 8 3 64.418 0 0 5.6828 0 0 165.07808468907973 0 165.07808468907973 0 42.0217596488785 0 0 0 1.8737125054200234 0 1.055462187404089 0 AHA{I|L}{M(Oxidation (M))|F}YT{M(Oxidation (M))|F} 5.6828 - 731 + NaN NaN 203342.8 NaN 20258 4434 24693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24695 97.195 NaN 519380 35 0 85449 0.261 + 17134 LYLPSFFTY 9 58 575.7944829575671 1149.574412981934 2 575.794677734375 MULTI HCD FTMS 0 0 0 24693 338884.34375 0.046774145490461785 20 -0.46234130859375 2 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 131.29775728308752 0.0005262696486345744 1 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 89.702 0 0 7.803 7.803 96.295 0 0 0 20.31665831563508 61.61954370472159 20.31665831563508 61.84324671144019 0 2.805462187404089 1.5228787452803376 1.055462187404089 0 + + [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[QA]T{M(Oxidation (M))|F}[{I|L}P][{I|L}P]TY;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}Y{I|L} 7.803;2.4234;1.2957;1.2422 +;-;-;- + 263 NaN NaN 165195.3 NaN 20259 4434 24693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24696 97.199 NaN 203500 35 0 39488 0.263 + 23631 RPRHRRKRH 9 67 433.60073339969773 1297.7803707992932 3 433.6011047363281 MULTI HCD FTMS 0 0 0 24693 19707.39453125 0.20571616162003323 9 -0.20980072021484375 3 Unmodified _RPRHRRKRH_ REV__ENSG00000152492|ENST00000392455|CCDC50;REV__NCEH1-CCDC50|1|fusion 0.235843874597859 0.3492291811235561 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 114487.5 NaN 20260 4434 24693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24698 97.204 NaN 604070 35 0 143780 0.327 + 10696 IPWDDLIAL 9 46 528.2921668634168 1054.5697807936335 2 528.2922973632812 MULTI HCD FTMS 0 0 0 24697 308827.65625 0.22067133401667677 -4 0.0682373046875 1 Unmodified _IPWDDLIAL_ ENSG00000160294|ENST00000291688|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP 11.640296217721598 0.25978676193971967 1 {I|L}A{I|L} 3 6 36.198 0 0 3.4325 0 0 739.3547042406742 0 739.3547042406742 0 31.593793813122062 0 0 0 1 0 0 0 + {I|L}A{I|L} 3.4325 + + 16 NaN NaN 175814 NaN 20261 4435 24697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24699 97.208 NaN 200280 35 0 16489 0.261 + 17379 LYQILQGIVF 10 52 597.3501926626927 1192.6858323921854 2 597.3502197265625 MULTI HCD FTMS 0 0 0 24697 25306.5546875 0.011179727739218444 17 -0.40360260009765625 2 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 32.78568957990786 0.20801173326193015 1 {I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 6 4 45.278 0 0 3.7963 0 0 517.2887440412125 0 517.2887440412125 0 37.31939364284848 0 0 0 1.9247425010840047 0 0 0 + {I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 3.7963 + + 66 NaN NaN 107123.9 NaN 20262 4435 24697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24700 97.212 NaN 137870 35 0 13677 0.263 -1 0 48 469.8303285319772 937.6461041307545 2 469.83056640625 MULTI HCD FTMS 0 0 0 24697 58429.44140625 0.4290867109926179 12 -0.27590179443359375 3 NaN NaN 1 Q{I|L} 2 -1 17.474 0 0 1.8636 0 0 678.5059681623062 0 678.5059681623062 0 5.484550065040281 0 0 0 0 0 0 0 Q{I|L} 1.8636 - 36 NaN NaN 106867.4 NaN 20263 4435 24697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24701 97.215 NaN 115080 35 0 22373 0.261 + 6242 FPEVDVFVL 9 42 532.7866040702368 1063.5586552072734 2 532.786376953125 MULTI HCD FTMS 0 0 0 24697 45298.22265625 0.3608185209021464 13 -0.2824249267578125 4 Unmodified _FPEVDVFVL_ ENSG00000132768|ENST00000255108|DPH2;nc|ENSG00000132768|Q9BQC3-3|DPH2 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}V{I|L} 3 6 33.5 0 0 3.1498 0 0 686.329346195385 0 686.329346195385 0 33.499934467764874 0 0 0 0.7302046884880937 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.1498 + + 7 NaN NaN 103428 NaN 20264 4435 24697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24702 97.218 NaN 57740 35 0 7576.5 0.261 + 33821 YLITDQAETVS 11 33 620.3082668408425 1238.601980748485 2 620.3076171875 MULTI HCD FTMS 0 0 0 24697 18126.642578125 0.11134153868508728 17 -0.40360260009765625 5 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 7.101721422024254 0.3877749288398915 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 44.961 0 0 3.63 0 0 0 598.2232760065061 598.2232760065061 43.99166239860314 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 3.63 - 8 + NaN NaN 96364.2 NaN 20265 4435 24697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24703 97.222 NaN 36808 35 0 6013.3 0.261 + -1 YNIKHFFMK 9 26 622.3168830522517 NaN 0 622.31689453125 PEAK HCD FTMS 0 0 0 24697 7265.4345703125 0.22596213188467562 4 -0.0948333740234375 6 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.2427956001690155 1 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4302310929814 274.08258997135005 1126.5128210643315 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 3 + NaN NaN 86151.3 NaN 20266 4435 24697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24705 97.227 NaN 234550 35 0 47343 0.327 + -1 MMCTSLHAF 9 45 565.2274121113269 1128.4402712894537 2 565.2279052734375 MULTI HCD FTMS 0 0 0 24704 85592.078125 0.30861247307757095 15 -0.35782623291015625 1 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TSLHAF_ REV__ENST00000282020.8_1_4:94006286-94006370:+|nuORF 7.910154910731844 0.2910521888787154 1 A{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5443 0 0 892.324821315624 0 892.324821315624 0 17.74227503252014 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.5443 + + 31 + NaN NaN 115911.9 NaN 20267 4436 24704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24706 97.231 NaN 148540 35 0 35794 0.261 + 10699 IPWGPRHSQ 9 42 539.2833140098818 1076.5520750865635 2 539.2836303710938 MULTI HCD FTMS 0 0 0 24704 136224.4375 0.5727089249261054 -3 0.06201171875 2 Unmodified _IPWGPRHSQ_ ENSG00000124203|ENST00000371030|ZNF831 13.90604991867851 0.24021115267848145 1 {I|L}PW 3 6 24.693 0 0 2.2937 0 0 0 677.3118990533811 677.3118990533811 1.5051499783199063 0 0 0 0 0 0 0 0 + {I|L}PW 2.2937 + + 12 + NaN NaN 104216.9 NaN 20268 4436 24704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24707 97.234 NaN 68735 35 0 6065.6 0.261 + 33496 YIDCIYLIF 9 44 581.7950439511401 1161.57553496908 2 582.2979736328125 MULTI HCD FTMS 0 0 0 24704 17387.3984375 0.15708510842683668 12 -0.2595367431640625 3 Unmodified _YIDCIYLIF_ REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1 12.531546534597751 0.2520865569484384 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 25.177 0 0 2.1675 0 0 736.3812733380875 0 736.3812733380875 0 19.69273760456403 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.1675 - 14 NaN NaN 88865.8 NaN 20269 4436 24704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24708 97.238 NaN 179200 35 0 27342 0.261 + 35522 YYGGQWFLF 9 48 590.7765784835099 1179.5386040338196 2 590.7755126953125 MULTI HCD FTMS 0 0 0 24704 82478.6953125 0.5183169769287403 -3 0.06201171875 4 Unmodified _YYGGQWFLF_ ENST00000455359.5_2_22:35653519-35659991:+|nuORF 28.486842064014134 0.11819662193267319 1 W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 5 46.186 0 0 3.9156 0 0 568.2279741699979 0 568.2279741699979 0 41.5815315012393 0 0 0 1.4247425010840047 0 0 0 + W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.9156 + + 19 NaN NaN 125532 NaN 20270 4436 24704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24709 97.241 NaN 45160 35 0 8540.6 0.261 + -1 YLLCGLSWLD 10 31 620.3082668408425 1238.601980748485 2 620.30859375 MULTI HCD FTMS 0 0 0 24704 26802.96484375 0.16463519563335022 18 -0.42652130126953125 5 Carbamidomethyl (C) _YLLC(Carbamidomethyl (C))GLSWLD_ REV__ENSG00000168038|ENST00000301831|ULK4 10.823927491677226 0.4098686510432541 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 44.693 0 0 3.6083 0 0 0 598.2259005182249 598.2259005182249 43.09894379144197 0 0 0 0 1 1.6989700043360187 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 3.6083 - 14 + NaN NaN 90400.9 NaN 20271 4436 24704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24711 97.246 NaN 346070 35 0 20087 0.327 -1 0 82 481.2835464289429 1440.8288098870287 3 481.28363037109375 MULTI HCD FTMS 0 0 0 24710 201649.15625 0.4506756146581656 21 -0.48862457275390625 1 NaN NaN 1 Q{[HG]|PP}N{[HG]|PP}{[DS]|[MA]|[CV]|TT} 8 -1 13.562 0 0 0.94124 0 0 590.350877830275 0 590.350877830275 0 1.7788665255644371 0 0 0 1.2302046884880937 0 0 0 Q{[HG]|PP}N{[HG]|PP}{[DS]|[MA]|[CV]|TT} 0.94124 - 42 NaN NaN 136460.5 NaN 20272 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24712 97.251 NaN 108760 35 0 4257.6 0.261 + 16630 LVYRRFLFVVF 11 48 486.959059115743 1457.855347947429 3 486.9590148925781 MULTI HCD FTMS 0 0 0 24710 95771.8203125 0.5759647843198868 19 -0.45272064208984375 2 Unmodified _LVYRRFLFVVF_ ENSG00000081800|ENST00000194130|SLC13A1 0.09484139111097674 0.41850472438158626 1 G 1 11 3.4949 0 0 0.23973 0 0 914.8615868163728 482.9597567193969 1397.8213435357698 0 0 0 0 0 0 0 0 0 G 0.23973 - 3 + NaN NaN 93887.2 NaN 20273 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24713 97.254 NaN 89350 35 0 8809.9 0.261 + 2962 DYVSIINYL 9 35 550.2871708920275 1098.5597888508548 2 550.2874755859375 MULTI HCD FTMS 0 0 0 24710 28148.595703125 0.46335577910592257 6 -0.1544342041015625 3 Unmodified _DYVSIINYL_ ENSG00000185900|ENST00000331373|POMK 31.26834338654808 0.10542797264966089 1 {I|L}NY{I|L} 4 5 45.433 0 0 4.1357 0 0 577.2738514630875 0 577.2738514630875 0 45.43305028184122 0 0 0 1.5 0 0 0 + {I|L}NY{I|L} 4.1357 + + 49 NaN NaN 100821.5 NaN 20274 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24714 97.257 NaN 78876 35 0 11573 0.261 + -1 QVAPSFHYC 9 44 554.7479605291112 1107.4813681250223 2 554.7478637695312 MULTI HCD FTMS 0 0 0 24710 23743.306640625 0.3790378915261898 -2 0.0424346923828125 4 Carbamidomethyl (C) _QVAPSFHYC(Carbamidomethyl (C))_ REV__ENST00000440107.5_1_2:232063485-232070929:+|nuORF 2.0597508629832335 0.3354026079994024 1 Q 1 -1 2.4743 0 0 0.22341 0 0 796.3517732537317 180.0429628961547 976.3947361498864 0 0 0 0 0 0 0 0 0 Q 0.22341 + + 4 + NaN NaN 96739.4 NaN 20275 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24715 97.261 NaN 194850 35 0 22598 0.261 + 14921 LLDDIEDIV 9 53 522.7756467954459 NaN 0 522.7747192382812 PEAK HCD FTMS 0 0 0 24710 13941.3525390625 0.284503858513749 -2 0.0424346923828125 5 Unmodified _LLDDIEDIV_ ENSG00000145996|ENST00000274695|CDKAL1;nc|ENSG00000145996|Q5VV42-3|CDKAL1 3.944395688203298 0.27613285122220627 1 {I|L} 1 8 6.9897 0 0 0.66981 0 0 113.08506465326464 814.345524718841 927.4305893721057 0 0 0 0 0 0 0 0 0 + {I|L} 0.66981 + + 3 + NaN NaN 109710.5 NaN 20276 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24716 97.264 NaN 105370 35 0 56710 0.261 -1 0 23 438.2547527988689 874.4949526645378 2 438.25494384765625 MULTI HCD FTMS 0 0 0 24710 12843.7373046875 0.4254168374276618 -2 0.0424346923828125 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100588.7 NaN 20277 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24717 97.267 NaN 33845 35 0 4549.6 0.261 -1 IMVWYHPTF 9 23 605.2939649641802 NaN 0 605.2935791015625 PEAK HCD FTMS 0 0 0 24710 20077.49609375 0.5889526215171069 -5 0.0944671630859375 7 Oxidation (M) _IM(Oxidation (M))VWYHPTF_ ENST00000548283.6_1_12:112374453-112450904:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82583.8 NaN 20278 4437 24710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24719 97.272 NaN 1006200 35 0 268160 0.327 + 6913 FPVFATVIL 9 57 503.80223718401805 1005.5899214348361 2 503.8023986816406 MULTI HCD FTMS 0 0 0 24718 748043.3125 0.4321262420112001 -1 0.02618408203125 1 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 50.855029805455786 0.030374663808198754 1 {M(Oxidation (M))|F}TV{I|L}{I|L} 5 4 54.737 0 0 5.4433 0 0 414.2469654767594 0 414.2469654767594 0 46.4363034371533 0 0 0 1.305462187404089 0 0.8494850021680094 0 {M(Oxidation (M))|F}TV{I|L}{I|L} 5.4433 - 113 NaN NaN 241685.2 NaN 20279 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24720 97.277 NaN 918160 35 0 262680 0.261 + 4475 EYIQFVPLL 9 59 561.3157167584666 1120.616880583733 2 561.3157958984375 MULTI HCD FTMS 0 0 0 24718 366935.875 0.024516560189186 20 -0.46244049072265625 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 78.7280429016045 0.006263961847259105 1 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 6 3 64.201 0 0 5.7291 0 0 405.189256736525 0 405.189256736525 0 36.75373472475883 0 0 0 2.305462187404089 0 0 0 + Q{M(Oxidation (M))|F}VP{I|L}{I|L} 5.7291 + + 139 NaN NaN 218805.6 NaN 20280 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24721 97.28 NaN 234680 35 0 28149 0.261 + 15854 LPLAFEFDPEL 11 57 645.8342921869574 1289.6540314407148 2 645.8346557617188 MULTI HCD FTMS 0 0 0 24718 64989.96484375 0.33119141097621557 4 -0.10527801513671875 3 Unmodified _LPLAFEFDPEL_ ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10 47.594388314883695 0.09129669622414652 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}D[EP]{I|L} 7 4 45.208 0 0 3.5054 0 0 394.26036269355626 0 394.26036269355626 0 34.23856958134451 0 0 0 2.1747425010840047 0 0 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F}D[EP]{I|L} 3.5054 + + 207 NaN NaN 120933.2 NaN 20281 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24722 97.284 NaN 28038 35 0 4797.2 0.261 -1 0 27 641.3847909797422 1280.7550290262843 2 641.3851928710938 MULTI HCD FTMS 0 0 0 24718 46515.6015625 0.2102759589051207 17 -0.400390625 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100061.9 NaN 20282 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24723 97.287 NaN 46424 35 0 5862.4 0.262 + 15069 LLWKRPFF 8 38 553.8299001969011 1105.6452474606021 2 553.829833984375 MULTI HCD FTMS 0 0 0 24718 37286.51171875 0.9615020321757551 -4 0.08155059814453125 5 Unmodified _LLWKRPFF_ REV__ENST00000240333.10_1_17:47785368-47785530:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85084.5 NaN 20283 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24724 97.29 NaN 139120 35 0 13418 0.261 + 31532 VYGIFNSVLF 10 48 579.8132027837096 1157.611852634219 2 579.8133544921875 MULTI HCD FTMS 0 0 0 24718 14301.3212890625 0.03125447542748293 14 -0.33498382568359375 6 Unmodified _VYGIFNSVLF_ ADC-ISOC1|1|fusion;ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2 15.248480904072842 0.3684828712757339 1 W{I|L}{M(Oxidation (M))|F} 3 8 34.253 0 0 2.9589 0 0 693.3465443341812 0 693.3465443341812 0 33.143265708843046 0 0 0 0.805462187404089 0 0 0 W{I|L}{M(Oxidation (M))|F} 2.9589 - 17 NaN NaN 101500.6 NaN 20284 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24725 97.294 NaN 125230 35 0 23687 0.261 + -1 YIKWTCTIM 9 45 587.7870000550429 NaN 0 587.7720947265625 PEAK HCD FTMS 0 0 0 24718 8576.68359375 0.3881011109670512 -1 0.02618408203125 7 Oxidation (M) _YIKWTCTIM(Oxidation (M))_ REV__ENST00000524967.5_1_1:169292445-169292478:-|nuORF 10.073929032068715 0.24642998803896465 1 E 1 -1 8.8515 0 0 0.75425 0 0 665.3322570907513 376.15439783267817 1041.4866549234296 0 0 0 0 0 0.4247425010840047 0 0 0 E 0.75425 - 9 + NaN NaN 95110.3 NaN 20285 4438 24718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24727 97.298 NaN 349540 35 0 43196 0.327 -1 0 53 514.79311989647 1027.5716868597399 2 514.79345703125 MULTI HCD FTMS 0 0 0 24726 349406.90625 1 0 0 1 NaN NaN 1 VTA{M(Oxidation (M))|F}VPE 7 -1 51.446 0 0 5.0066 0 0 266.16014296699376 0 266.16014296699376 0 21.000707439735322 0 0 0 1 0 0 0 VTA{M(Oxidation (M))|F}VPE 5.0066 - 134 NaN NaN 130782.9 NaN 20286 4439 24726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24728 97.303 NaN 452850 35 0 74814 0.261 + 17331 LYPSTLFLL 9 53 533.8126839674719 1065.6108150017437 2 533.8129272460938 MULTI HCD FTMS 0 0 0 24726 195745.859375 0.30314382378337495 -3 0.0719451904296875 2 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 92.8221339359638 0.0044520161739443126 1 [Y{I|L}]PST{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 79.548 0 0 7.465 7.465 93.056 0 0 0 15.885540741363187 16.478174818886373 15.885540741363187 15.885540741363187 0 2.517220322351953 1.3979400086720375 0.805462187404089 0 + + [Y{I|L}]PST{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]PSVVY{I|L}{I|L};[Y{I|L}]PSVV{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}VVY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}VV{I|L}Y{I|L} 7.465;5.9743;3.8459;2.9995;2.3551;1.5088 +;-;-;-;-;- + 186 NaN NaN 151558.6 NaN 20287 4439 24726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24729 97.306 NaN 216650 35 0 40578 0.261 + 17510 LYTLYVAFV 9 61 544.803883173755 1087.59321341431 2 545.31689453125 MULTI HCD FTMS 0 0 0 24726 29971.861328125 0.2618006005775666 -3 0.0719451904296875 3 Unmodified _LYTLYVAFV_ REV__ENST00000566455.1_1_16:77227993-77232202:+|nuORF 8.593279151180031 0.2858735984551981 1 A 1 -1 6.9897 0 0 0.64268 0 0 131.12648656278458 882.4044283502561 1013.5309149130408 0 0 0 0 0 0 0 0 0 A 0.64268 + + 20 + NaN NaN 114998.7 NaN 20288 4439 24726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24730 97.31 NaN 183380 35 0 26598 0.261 + 320 AFYHRYYH 8 47 578.7698386886759 1155.5251244441517 2 578.7704467773438 MULTI HCD FTMS 0 0 0 24726 26643.005859375 0.19957742233152548 15 -0.35457611083984375 4 Unmodified _AFYHRYYH_ ENSG00000158008|ENST00000374280|EXTL1 5.760428011301431 0.5334459684533844 1 {M(Oxidation (M))|F} 1 7 2.2185 0 0 0.19199 0 0 593.457266633408 412.0063570611938 1005.4636236946019 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.19199 + + 23 + NaN NaN 116238.4 NaN 20289 4439 24726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24731 97.313 NaN 34296 35 0 4396.6 0.261 + 23385 RKWFIYCF 8 30 581.7950439511401 1161.57553496908 2 582.2965698242188 MULTI HCD FTMS 0 0 0 24726 14285.8134765625 0.1290640786198056 15 -0.35457611083984375 5 Unmodified _RKWFIYCF_ REV__ENSG00000249715|ENST00000624922|FER1L5;REV__nc|ENSG00000249715|A0AVI2-2|FER1L5;REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 5.230669730166228 0.5342319408533849 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83413.8 NaN 20290 4439 24726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24733 97.318 NaN 316490 35 0 88287 0.327 + 11287 IYLTFPVAMF 10 42 609.3177984242096 1216.6210439152192 2 609.3175659179688 MULTI HCD FTMS 0 0 0 24732 148442.328125 0.14657804774141683 31 -0.674591064453125 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 125.62461146993168 2.8380270204069364E-05 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 107.8 0 0 8.8603 8.8603 97.33 0 0 0 22.754537344402905 96.82766571201022 22.754537344402905 44.13425655227236 0 2.8494850021680094 1.6989700043360187 1.9916440611282626 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.8603;5.2327 +;- + 120 NaN NaN 137170.9 NaN 20291 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24734 97.323 NaN 212730 35 0 26810 0.261 + 75 ADFLAEIEAL 10 57 546.2844745511493 1090.5543961690985 2 546.28466796875 MULTI HCD FTMS 0 0 0 24732 88822 0.33743098363076796 4 -0.1086883544921875 2 Unmodified _ADFLAEIEAL_ ENSG00000101782|ENST00000339486|RIOK3;nc|ENSG00000101782|O14730-2|RIOK3 43.77239144664712 0.11267038882370725 1 E{I|L}EADEA{I|L} 8 6 64.093 0 0 5.8771 0 0 202.13171584297032 0 202.13171584297032 0 60.113525574522484 0 0 0 1.3494850021680094 0 0.4247425010840047 0 E{I|L}EADEA{I|L} 5.8771 - 147 NaN NaN 126131.6 NaN 20292 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24735 97.326 NaN 192960 35 0 35566 0.261 + 35523 YYGGQWFLF 9 34 590.7765784835099 1179.5386040338196 2 590.77685546875 MULTI HCD FTMS 0 0 0 24732 116819.5 0.7341232770100624 1 -0.02996063232421875 3 Unmodified _YYGGQWFLF_ ENST00000455359.5_2_22:35653519-35659991:+|nuORF 36.04419817259434 0.08350412372117409 1 W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 5 45.433 0 0 3.8518 0 0 568.2282933002134 0 568.2282933002134 0 39.94850021680094 0 0 0 1.5 0 0 0 + W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.8518 + + 29 NaN NaN 110038 NaN 20293 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24736 97.329 NaN 105800 35 0 16685 0.261 + 19480 NPWRYLWL 8 45 574.3056171150055 1146.5966812968109 2 574.3055419921875 MULTI HCD FTMS 0 0 0 24732 46421.26171875 0.5292209154217743 4 -0.1086883544921875 4 Unmodified _NPWRYLWL_ REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}W{I|L} 3 -1 31.198 0 0 2.7209 0 0 716.3430042951187 0 716.3430042951187 0 24.20818753952375 0 0 0 0.5 0 0 0 {I|L}W{I|L} 2.7209 + + 30 NaN NaN 97263.6 NaN 20294 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24737 97.333 NaN 175280 35 0 27237 0.261 + 35450 YYELKIAF 8 43 523.7810974374887 1045.5476419417773 2 523.2897338867188 MULTI HCD FTMS 0 0 0 24732 15592.447265625 0.4347267788367081 1 -0.02996063232421875 5 Unmodified _YYELKIAF_ ENSG00000068615|ENST00000538924|REEP1;ENSG00000165476|ENST00000373758|REEP3;nc|ENSG00000068615|Q9H902-2|REEP1;nc|ENSG00000068615|Q9H902-3|REEP1;nc|ENSG00000068615|Q9H902|REEP1;nc|ENSG00000165476|Q6NUK4-2|REEP3 4.3292370932331545 0.5355693454741696 1 VM 2 8 7.9588 0 0 0.76121 0 0 132.07746317286598 680.3210543268186 812.3985174996847 0 0 0 0 0 0 0 0 0 VM 0.76121 - 10 + NaN NaN 114838.8 NaN 20295 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24738 97.336 NaN 150860 35 0 31127 0.261 + 990 AYFNFPELL 9 40 557.2843863626786 1112.554219792157 2 557.2858276367188 MULTI HCD FTMS 0 0 0 24732 34992.7578125 0.00045731024247817263 86 -1.6483688354492188 6 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}[HM]A{I|L} 5 7 21.682 0 0 1.9489 0 0 495.2103749005875 0 495.2103749005875 0 21.682437647924218 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}[HM]A{I|L} 1.9489 - 5 NaN NaN 97783.8 NaN 20296 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24739 97.343 NaN 50676 35 0 4885 0.261 + 30795 VPSPVTTQQTF 11 33 602.8153704544345 NaN 0 602.8154907226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VPSPVTTQQTF_ REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF 4.5288652416199255 0.32927305702295745 1 C(Carbamidomethyl (C)) 1 -1 1.5938 0 0 0.13242 0 0 864.1059778700034 176.4501894586547 1040.5561673286581 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.13242 - 2 + NaN NaN 87057.3 NaN 20297 4440 24732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24741 97.348 NaN 780080 35 0 237340 0.327 + 32666 WPALEDLVL 9 52 528.2921668634168 1054.5697807936335 2 528.292236328125 MULTI HCD FTMS 0 0 0 24740 883028.625 0.6309639072477397 2 -0.05248260498046875 1 Unmodified _WPALEDLVL_ ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 20.453626601364224 0.18364154288633264 1 D{I|L}V{I|L} 4 5 37.211 0 0 3.5286 0 0 596.2942982404312 0 596.2942982404312 0 16.75373472475883 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + D{I|L}V{I|L} 3.5286 + + 56 NaN NaN 212250.8 NaN 20298 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24742 97.352 NaN 634070 35 0 65215 0.261 + 29041 TYFFTAVLI 9 59 537.7969726008603 1073.5793922685205 2 537.7973022460938 MULTI HCD FTMS 0 0 0 24740 329191.625 0.6901796541204139 -1 0.02996063232421875 2 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 120.45040980043947 0.0012363446172167195 1 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 9 0 + 100.43 0 0 9.3545 9.3545 97.8 0 0 0 18.881580146315784 84.23061874357607 18.881580146315784 42.381747095347535 0 2.5356668758921828 1.5228787452803376 1.6989700043360187 0 + + [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TA{I|L}V{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}T[{I|L}V]A{I|L} 9.3545;5.4068;3.7554 +;-;- + 205 NaN NaN 176521.9 NaN 20299 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24743 97.356 NaN 514680 35 0 72267 0.261 + 19538 NSISYKFEY 9 59 575.77521513635 NaN 0 575.7947387695312 PEAK HCD FTMS 0 0 0 24740 12528.1484375 0.8252959742128942 -2 0.04955291748046875 3 Unmodified _NSISYKFEY_ REV__tr|U7STE2|U7STE2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01452PE=4SV=1 14.838274106304384 0.2220448417561729 1 T{M(Oxidation (M))|F}P{I|L}{I|L}DT 7 -1 25.47 0 0 2.2157 0 0 181.03384777272646 178.05091272525627 359.08476049798276 0 0 0 0 0 0 0 0.3054621874040891 0 T{M(Oxidation (M))|F}P{I|L}{I|L}DT 2.2157 - 219 + NaN NaN 161755.3 NaN 20300 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24744 97.359 NaN 366670 35 0 77112 0.261 + 303 AFPEIFYTF 9 72 567.778799339964 1133.543045746728 2 567.7791137695312 MULTI HCD FTMS 0 0 0 24740 122415.0234375 0.13575901455653755 17 -0.3866729736328125 4 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 78.14939416004806 0.006451203201226903 1 [YE]HK{M(Oxidation (M))|F}YT 7 6 64.658 0 0 5.7041 0 0 0 162.05573450260002 162.05573450260002 35.717721471423104 0 0 0 0 1 2 0.5941876774005248 0 [YE]HK{M(Oxidation (M))|F}YT 5.7041 - 435 + NaN NaN 138291.9 NaN 20301 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24745 97.363 NaN 152040 35 0 11888 0.261 + 17380 LYQILQGIVF 10 42 597.3501926626927 1192.6858323921854 2 597.35009765625 MULTI HCD FTMS 0 0 0 24740 58421.234375 0.02580886661842516 23 -0.5043716430664062 5 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 32.78568957990786 0.20801173326193015 1 {I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 6 4 45.278 0 0 3.7963 0 0 517.2889271466812 0 517.2889271466812 0 29.08030623340529 0 0 0 1.9247425010840047 0 0 0 + {I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 3.7963 + + 67 NaN NaN 106747.7 NaN 20302 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24746 97.366 NaN 222820 35 0 21376 0.261 + 7410 FVNLEFLSL 9 65 541.2999569794235 1080.585361025647 2 541.3005981445312 MULTI HCD FTMS 0 0 0 24740 23659.431640625 0.214609896565279 5 -0.1244049072265625 6 Unmodified _FVNLEFLSL_ ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B 28.494509381512117 0.11816142465008336 1 E{M(Oxidation (M))|F}{I|L}S{I|L} 5 4 42.779 0 0 3.9589 0 0 473.2624684064469 0 473.2624684064469 0 21.81031895404267 0 0 0 1.774227503252014 0 0 0 + E{M(Oxidation (M))|F}{I|L}S{I|L} 3.9589 + + 545 NaN NaN 108204.6 NaN 20303 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24747 97.369 NaN 153900 35 0 29082 0.261 + 991 AYFNFPELL 9 31 557.2843863626786 1112.554219792157 2 557.283935546875 MULTI HCD FTMS 0 0 0 24740 49610.2734375 0.0006483423311953793 87 -1.6354217529296875 7 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 13.042465956692817 0.2476723265019929 1 {I|L}{I|L} 2 7 16.198 0 0 1.4559 0 0 868.375291892775 0 868.375291892775 0 5.713337517843655 0 0 0 0 0 0 0 + {I|L}{I|L} 1.4559 + + 2 NaN NaN 105738.1 NaN 20304 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24748 97.373 NaN 69996 35 0 6072.1 0.261 -1 MEESKQKLVP 10 37 602.8153704544345 NaN 0 602.7542114257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _M(Oxidation (M))EESKQKLVP_ ENSG00000114388|ENST00000232501|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2 1.3295316138638542 0.339046394236575 1 T 1 -1 6.9897 0 0 0.58072 0 0 166.08498982738644 933.4647921197874 1099.5497819471739 0 0 0 0 0 0 0 0 0 T 0.58072 - 2 + NaN NaN 94849.8 NaN 20305 4441 24740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24750 97.378 NaN 432880 35 0 134690 0.327 + 33960 YLSWRHNI 8 56 544.7852369669531 1087.5559210007061 2 544.8038330078125 MULTI HCD FTMS 0 0 0 24749 26853.044921875 0.7474046951254052 2 -0.04921722412109375 1 Unmodified _YLSWRHNI_ ENSG00000130150|ENST00000380492|MOSPD2;ENST00000461777.1_1_X:14891644-14911041:+|nuORF 9.347437153973935 0.5250182646323369 1 [Y{I|L}]HS[RD]{I|L}A 8 5 26.094 0 0 2.3993 0 0 0 129.06300099285343 129.06300099285343 4.807131330965717 0 0 0 0 0.3935078169319297 2 0.7302046884880937 0.3252574989159953 [Y{I|L}]HS[RD]{I|L}A 2.3993 - 134 NaN NaN 149971.3 NaN 20306 4442 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24751 97.382 NaN 84820 35 0 10398 0.261 -1 IRMMLEII 8 46 525.7899041653741 NaN 0 525.8081665039062 PEAK HCD FTMS 0 0 0 24749 27490.708984375 0.8400390869556447 1 -0.02297210693359375 2 2 Oxidation (M) _IRM(Oxidation (M))M(Oxidation (M))LEII_ ENSG00000141627|ENST00000675505|DYM;nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM 7.289230182591677 0.38822285293237185 1 V 1 -1 7.4743 0 0 0.71213 0 0 373.2232276649293 574.2518404596311 947.4750681245605 0 0 0 0 0 0.5 0 0 0 V 0.71213 - 22 + NaN NaN 93930.7 NaN 20307 4442 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24752 97.386 NaN 308820 35 0 26134 0.261 + 32385 VYVVYPQLV 9 72 540.310237432683 1078.605921932166 2 540.3096313476562 MULTI HCD FTMS 0 0 0 24749 8361.0751953125 0.07972467838937347 12 -0.2755126953125 3 Unmodified _VYVVYPQLV_ REV__ENST00000426919.5_1_10:103345907-103347065:-|nuORF 4.75600775471527 0.31496297302216103 1 [RK]A[HM][QP][{I|L}V] 9 -1 + 11.641 0 0 1.0792 1.0792 84.908 0 0 0 5.187099445819076 4.193474691972982 4.193474691972982 11.64074964093992 0 0.4247425010840047 0 0 0 [RK]A[HM][QP][{I|L}V] 1.0792 - 191 + NaN NaN 132153.2 NaN 20308 4442 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24753 97.389 NaN 74932 35 0 7613.2 0.261 -1 0 43 469.8303285319772 937.6461041307545 2 470.3318786621094 MULTI HCD FTMS 0 0 0 24749 21041.595703125 0.2698677346384288 16 -0.3571624755859375 4 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.74545 0 0 241.1340324528232 580.4084227229533 821.5424551757765 0 0 0 0 0 0 0 0 0 {I|L} 0.74545 - 7 + NaN NaN 91534.4 NaN 20309 4442 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24754 97.392 NaN 78154 35 0 6643.7 0.261 + -1 KRRQLCVRKLM 11 46 510.6341977028079 1528.8807637086238 3 510.9686584472656 MULTI HCD FTMS 0 0 0 24749 42114.90234375 0.7359018214660735 -1 0.029510498046875 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101743 NaN 20310 4442 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24755 97.396 NaN 56052 35 0 5650.1 0.261 + 11180 IYIWDLNNF 9 33 599.3012321910162 1196.5879114488323 2 599.80322265625 MULTI HCD FTMS 0 0 0 24749 10462.4501953125 0.4697745206620478 3 -0.07541656494140625 6 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 13.90604991867851 0.24021115267848145 1 {I|L}{I|L}[HK]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 7 4 13.773 0 0 1.151 0 0 312.10594374824376 0 312.10594374824376 0 7.17879772898371 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L}[HK]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 1.151 - 12 NaN NaN 93249.3 NaN 20311 4442 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24757 97.401 NaN 291180 35 0 16213 0.327 + 22682 QWSRLRRRAGR 11 73 481.2835464289429 1440.8288098870287 3 481.2837219238281 MULTI HCD FTMS 0 0 0 24756 187679.890625 0.4194550160256332 27 -0.572601318359375 1 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 0.4545168274142398 0.41692731010159206 1 Q 1 -1 3.9794 0 0 0.27619 0 0 766.4555931895662 543.3021334283811 1309.7577266179474 0 0 0 0 0 0 0 0 0 Q 0.27619 + + 15 + NaN NaN 128723.2 NaN 20312 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24758 97.405 NaN 139900 35 0 7576.7 0.261 + 16631 LVYRRFLFVVF 11 53 486.959059115743 1457.855347947429 3 486.9590148925781 MULTI HCD FTMS 0 0 0 24756 89797.859375 0.5400378163278884 25 -0.536773681640625 2 Unmodified _LVYRRFLFVVF_ ENSG00000081800|ENST00000194130|SLC13A1 0.5059551277355931 0.4167017191902429 1 G 1 11 3.0989 0 0 0.21257 0 0 105.07783766162727 1292.7638643854127 1397.84170204704 0 0 0 0 0 0 0 0 0 G 0.21257 - 6 + NaN NaN 104766.2 NaN 20313 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24759 97.409 NaN 207530 35 0 47385 0.261 -1 TYNMVLNLL 9 54 548.7881948287087 1095.5618367242173 2 548.788330078125 MULTI HCD FTMS 0 0 0 24756 57290.76171875 0.7362998620520419 1 -0.0262451171875 3 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 13.90604991867851 0.24021115267848145 1 [YT]{M(Oxidation (M))|F} 3 -1 38.952 0 0 3.5555 0 0 0 681.3587077900127 681.3587077900127 13.735899786366232 0 0 0 0 0.8494850021680094 2 0 0 [YT]{M(Oxidation (M))|F} 3.5555 - 132 + NaN NaN 113263.3 NaN 20314 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24760 97.412 NaN 95314 35 0 20385 0.261 + 13484 KYPENFFLL 9 29 585.8131813777213 1169.6118098222425 2 585.8136596679688 MULTI HCD FTMS 0 0 0 24756 55406.8359375 0.5773554501875815 49 -0.981842041015625 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 36.938 0 0 3.1582 0 0 631.2995472638687 0 631.2995472638687 0 36.938200260161125 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.1582 + + 22 NaN NaN 91196.7 NaN 20315 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24761 97.415 NaN 91756 35 0 8092.4 0.261 + 3410 EFAQDDDRL 9 47 554.7479605291112 1107.4813681250223 2 554.747802734375 MULTI HCD FTMS 0 0 0 24756 20302.40625 0.32410739474430555 4 -0.07903289794921875 5 Unmodified _EFAQDDDRL_ CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant;CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 1.4819007175156935 0.3397831423917744 1 Q 1 8 3.4949 0 0 0.31557 0 0 131.98345660334104 844.4182222955686 976.4016788989097 0 0 0 0 0 0 0 0 0 + Q 0.31557 + + 4 + NaN NaN 101086.9 NaN 20316 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24762 97.418 NaN 62482 35 0 5536.3 0.262 -1 0 30 469.8303285319772 937.6461041307545 2 469.8301696777344 MULTI HCD FTMS 0 0 0 24756 14101.341796875 0.10355564295291386 20 -0.42913818359375 6 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.74545 0 0 241.1295158512607 580.4082735650999 821.5377894163605 0 0 0 0 0 0 0 0 0 {I|L} 0.74545 - 4 + NaN NaN 88245.4 NaN 20317 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24763 97.422 NaN 70822 35 0 15864 0.261 + 16921 LYGKVMACQIL 11 33 619.8370518735744 NaN 0 620.3085327148438 PEAK HCD FTMS 0 0 0 24756 10790.0419921875 0.4491322956641693 1 -0.0262451171875 7 Unmodified _LYGKVMACQIL_ REV__ENSG00000163218|ENST00000359650|PGLYRP4;REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4 8.745405648335112 0.31731194618894887 1 A 1 -1 11.99 0 0 0.96874 0 0 475.24464710476747 688.3539522760374 1163.598599380805 0 0 0 0 0 0.5 0 0 0 A 0.96874 + + 5 + NaN NaN 86274.2 NaN 20318 4443 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24765 97.427 NaN 727270 35 0 171440 0.327 + 6914 FPVFATVIL 9 48 503.80223718401805 1005.5899214348361 2 503.8023376464844 MULTI HCD FTMS 0 0 0 24764 418228 0.2416000396285345 5 -0.09845733642578125 1 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 50.855029805455786 0.030374663808198754 1 {M(Oxidation (M))|F}TV{I|L}{I|L} 5 4 56.568 0 0 5.6254 0 0 414.2469654767594 0 414.2469654767594 0 41.08349385648225 0 0 0 1.25 0 0.8494850021680094 0 {M(Oxidation (M))|F}TV{I|L}{I|L} 5.6254 - 71 NaN NaN 194317.8 NaN 20319 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24766 97.431 NaN 561990 35 0 146830 0.261 + 4476 EYIQFVPLL 9 62 561.3157167584666 1120.616880583733 2 561.3158569335938 MULTI HCD FTMS 0 0 0 24764 204626.109375 0.013671948339123682 26 -0.546356201171875 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 74.92900055777586 0.007493270374442853 1 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 6 3 47.752 0 0 4.2613 0 0 405.19047743965 0 405.19047743965 0 32.80394370788876 0 0 0 2.1237125054200234 0 0 0.3494850021680094 + Q{M(Oxidation (M))|F}VP{I|L}{I|L} 4.2613 + + 78 NaN NaN 170519.5 NaN 20320 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24767 97.435 NaN 57392 35 0 5457.3 0.261 + 21282 PRRRPAPGLS 10 34 553.8299001969011 1105.6452474606021 2 553.830322265625 MULTI HCD FTMS 0 0 0 24764 30059.0546875 0.7751286144790999 2 -0.04567718505859375 3 Unmodified _PRRRPAPGLS_ ENST00000609519.5_1_19:15509475-15509532:-|nuORF 1.4819007175156935 0.4674597685733628 1 {I|L} 1 9 3.9794 0 0 0.35992 0 0 815.2964143080616 174.23706995181877 989.5334842598803 0 0 0 0 0 0 0 0 0 + {I|L} 0.35992 + + 5 + NaN NaN 92799.6 NaN 20321 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24768 97.438 NaN 83347 35 0 8243.3 0.261 + 35822 YYPSFLPYF 9 37 598.786969100546 1195.559385267892 2 598.7876586914062 MULTI HCD FTMS 0 0 0 24764 6382.859375 0.012587839207419998 19 -0.40289306640625 4 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 11.640296217721598 0.25978676193971967 1 {I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 7 29.38 0 0 2.4575 0 0 657.2767201154312 0 657.2767201154312 0 18.922815857436532 0 0 0 1.3182503180159344 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4575 - 20 NaN NaN 93229.4 NaN 20322 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24769 97.441 NaN 30774 35 0 6652.3 0.261 + 23819 RRRQRPVSLN 10 20 641.3848266601562 NaN 0 641.3848266601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RRRQRPVSLN_ REV__ENSG00000171316|ENST00000423902|CHD7 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102851.1 NaN 20323 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24770 97.445 NaN 62616 35 0 5910.1 0.261 + 24246 RYFLPPYTF 9 36 602.3153076171875 NaN 0 602.3153076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 9.38312468134398 0.24977752951804 1 T 1 8 4.6041 0 0 0.38284 0 0 165.08096644826065 933.4585665338499 1098.5395329821106 0 0 0 0 0 0 0 0 0 + T 0.38284 + + 5 + NaN NaN 94845.9 NaN 20324 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24771 97.448 NaN 151280 35 0 23893 0.261 + 29844 VETILISFE 9 58 525.78955078125 NaN 0 525.78955078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VETILISFE_ REV__ENSG00000142549|ENST00000270642|IGLON5 25.399314129420986 0.1511568710901456 1 R{[QG]|[NA]}S{I|L} 5 -1 14.195 0 0 1.3524 0 0 276.10360077949355 229.11915002994377 505.22275080943734 0 0 0 0 0 0 0 0.8252574989159953 0 R{[QG]|[NA]}S{I|L} 1.3524 - 73 + NaN NaN 103131 NaN 20325 4444 24764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24773 97.453 NaN 567210 35 0 97657 0.327 + 17333 LYPSTLFLL 9 43 533.81298828125 NaN 0 533.81298828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 97.07464715276575 4.3244904542314336E-05 1 {I|L}{M(Oxidation (M))|F}{I|L}T 4 6 50.349 0 0 4.7249 0 0 131.0945755175731 457.20993982486567 588.3045153424388 0 0 0 0 0 1.9247425010840047 0 1.1549471895720984 0 {I|L}{M(Oxidation (M))|F}{I|L}T 4.7249 - 47 + NaN NaN 166844.1 NaN 20326 4445 24772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24774 97.457 NaN 128180 35 0 15005 0.261 + 6887 FPVDKPNIV 9 32 514.7935791015625 NaN 0 514.7935791015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FPVDKPNIV_ ENSG00000136114|ENST00000258613|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;nc|ENSG00000136114|Q9NS62-3|THSD1 18.1463463914782 0.1998403495282098 1 PV{M(Oxidation (M))|F} 3 7 26.198 0 0 2.5495 0 0 147.0691191108147 534.2923678033811 681.3614869141959 0 0 0 0 0 1 0 0 0 PV{M(Oxidation (M))|F} 2.5495 - 26 + NaN NaN 93499.8 NaN 20327 4445 24772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24775 97.461 NaN 76693 35 0 7982.4 0.261 + 28183 TKLDEESIPI 10 36 572.809326171875 NaN 0 572.809326171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TKLDEESIPI_ REV__tr|U7SNG3|U7SNG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01981PE=4SV=1 3.944395688203298 0.33680843299986807 1 QYP 3 -1 16.682 0 0 1.46 0 0 391.2114146763195 360.1898758316499 751.4012905079694 0 0 0 0 0 0.3494850021680094 0 0 0 QYP 1.46 - 45 + NaN NaN 91018.5 NaN 20328 4445 24772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24776 97.464 NaN 59066 35 0 7880.8 0.263 -1 RDFAGELEVLC 11 31 436.8796296080985 1307.6170594244957 3 437.21441650390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _RDFAGELEVLC(Carbamidomethyl (C))_ ENSG00000066056|ENST00000372476|TIE1;ENSG00000120156|ENST00000380036|TEK;nc|ENSG00000120156|Q02763-2|TEK;nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant 1.214830529360525 0.41359283248740725 1 N 1 -1 2.2185 0 0 0.16966 0 0 871.6735607446113 318.88532434635005 1190.5588850909614 0 0 0 0 0 0 0 0 0 N 0.16966 - 1 + NaN NaN 94011.5 NaN 20329 4445 24772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24777 97.467 NaN 96920 35 0 24676 0.261 -1 KNTQEMMKVL 10 36 619.3181695982589 1236.6217862633177 2 619.8191528320312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _KNTQEM(Oxidation (M))MKVL_ ENSG00000205301|ENST00000511113|MGAT4D 2.498486711656943 0.462078817294651 1 V{I|L} 2 -1 20.969 0 0 1.6957 0 0 1006.4566274746478 0 1006.4566274746478 0 12.016675202793719 0 0 0 0 0 0 0 V{I|L} 1.6957 + + 11 NaN NaN 90445 NaN 20330 4445 24772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24781 97.486 NaN 613290 35 0 67689 0.327 + 29042 TYFFTAVLI 9 60 537.796959244543 1073.579365555886 2 537.7973022460938 MULTI HCD FTMS 0 0 0 24780 380670.15625 0.9834966554180806 -4 0.0593109130859375 1 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 120.45040980043947 0.0012363446172167195 1 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 9 0 + 98.427 0 0 9.1681 9.1681 95.916 0 0 0 17.147642715192504 80.85593167151288 17.147642715192504 17.774334638038454 0 2.610924374808178 1.3010299956639813 1.5484550065040281 0 + + [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L};[{I|L}V][DC]QTAV{I|L}{I|L};[{I|L}V][DC][AG]TAV{I|L}{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TA{I|L}V{I|L} 9.1681;7.5125;6.6588;5.4622 +;-;-;- + 319 NaN NaN 181237 NaN 20331 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24782 97.49 NaN 413250 35 0 128770 0.261 + 32667 WPALEDLVL 9 53 528.2923905521094 NaN 0 528.2926025390625 PEAK HCD FTMS 0 0 0 24780 293622.21875 1 0 0 2 Unmodified _WPALEDLVL_ ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 20.453626601364224 0.18435338882370536 1 A{I|L} 2 7 12.206 0 0 1.1575 0 0 131.09499664676304 736.3344820611936 867.4294787079566 0 0 0 0 0 0.4247425010840047 0 0 0 + A{I|L} 1.1575 + + 28 + NaN NaN 136525.2 NaN 20332 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24783 97.494 NaN 220370 35 0 40052 0.261 + -1 PYCALLPVL 9 44 523.2896273203264 1044.5647017074527 2 523.8104248046875 MULTI HCD FTMS 0 0 0 24780 51149.10546875 1 0 0 3 Carbamidomethyl (C) _PYC(Carbamidomethyl (C))ALLPVL_ REV__ENSG00000227268|ENST00000445946|KLLN 14.581692164780916 0.23437375358055648 1 V{I|L} 2 -1 22.959 0 0 2.1979 0 0 814.40141493965 0 814.40141493965 0 15.172203223519531 0 0 0 0.5 0 0 0 V{I|L} 2.1979 + + 10 NaN NaN 131092.7 NaN 20333 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24784 97.497 NaN 323960 35 0 41622 0.261 + 14534 LFEFGVFEY 9 51 575.7760300236192 1149.5375071140384 2 575.7949829101562 MULTI HCD FTMS 0 0 0 24780 26338.822265625 1 0 0 4 Unmodified _LFEFGVFEY_ REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant 20.453626601364224 0.18364154288633264 1 [Y{I|L}]{I|L}{[CT]|[{M(Oxidation (M))|F}G]}VY[{M(Oxidation (M))|F}E] 9 -1 + 34.63 0 0 3.0125 3.0125 82.102 0 0 0 4.231486895455284 -3.139406530592261 -3.139406530592261 6.784211946488348 0 0.7059771852360797 1.6989700043360187 0 0 [Y{I|L}]{I|L}{[CT]|[{M(Oxidation (M))|F}G]}VY[{M(Oxidation (M))|F}E];MYRRN{M(Oxidation (M))|F}TY;MYRRGG{M(Oxidation (M))|F}TY;[Y{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[MT]{I|L}[{M(Oxidation (M))|F}E];MY{I|L}[MT][{M(Oxidation (M))|F}V][{M(Oxidation (M))|F}V] 3.0125;2.4224;1.6167;1.5131;0.20372 -;-;-;-;- 257 NaN NaN 143365.2 NaN 20334 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24785 97.5 NaN 142920 35 0 39120 0.261 + 11288 IYLTFPVAMF 10 26 609.3171506911058 1216.6197484490115 2 609.3175048828125 MULTI HCD FTMS 0 0 0 24780 153137.15625 1 0 0 5 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 43.85829265575387 0.11192494793849486 1 {M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 46.911 0 0 3.8559 0 0 490.2798329084 0 490.2798329084 0 39.921525057367404 0 0 0 2 0 0 0 + {M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8559 + + 26 NaN NaN 100291.5 NaN 20335 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24786 97.504 NaN 118950 35 0 31768 0.264 -1 KKCHQCVETI 10 36 434.8822436452356 NaN 0 434.8822937011719 PEAK HCD FTMS 0 0 0 24780 70120.171875 0.3379521805403405 -121 2.5055694580078125 6 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103335.5 NaN 20336 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24787 97.507 NaN 123230 35 0 19925 0.261 + 304 AFPEIFYTF 9 51 567.778657190978 1133.542761448756 2 567.7787475585938 MULTI HCD FTMS 0 0 0 24780 71860.828125 1 0 0 7 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 24.020572477871973 0.15282392193088168 1 [YE]HK{M(Oxidation (M))|F}YT 7 6 52.197 0 0 4.6048 0 0 0 162.05620752506096 162.05620752506096 35.99948217190132 0 0 0 0 0.6747425010840047 1.5228787452803376 0 0 [YE]HK{M(Oxidation (M))|F}YT 4.6048 - 200 + NaN NaN 99639.5 NaN 20337 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24788 97.51 NaN 187830 35 0 79366 0.261 + 28930 TWTPYNIMVL 10 25 619.3181695982589 1236.6217862633177 2 619.3180541992188 MULTI HCD FTMS 0 0 0 24780 63158.15625 0.6013916544622709 -3 0.033111572265625 8 Unmodified _TWTPYNIMVL_ ENSG00000133019|ENST00000676153|CHRM3;ENSG00000168539|ENST00000306960|CHRM1;ENSG00000184984|ENST00000383263|CHRM5;nc|ENSG00000168539|P11229-2|CHRM1 5.296884461304476 0.4472664531305844 1 V{I|L} 2 8 25.969 0 0 2.1 0 0 1006.4588037029097 0 1006.4588037029097 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.1 + + 15 NaN NaN 115638.8 NaN 20338 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24789 97.514 NaN 75163 35 0 16879 0.264 + 2750 DWPNFAVG 8 29 453.2095991595399 NaN 0 453.20965576171875 PEAK HCD FTMS 0 0 0 24780 35818.00390625 0.6416728657053783 -112 2.3032760620117188 9 Unmodified _DWPNFAVG_ REV__ENSG00000161996|ENST00000293879|WDR90;REV__ENST00000546516.5_1_16:705169-713132:+|nuORF;REV__ENST00000547407.5_1_16:711076-715728:+|nuORF;REV__ENST00000549024.5_1_16:711101-717586:+|nuORF;REV__ENST00000552683.5_1_16:707859-713132:+|nuORF;REV__ENST00000552728.5_1_16:708591-715679:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100312.1 NaN 20339 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24790 97.517 NaN 44317 35 0 3517.1 0.261 -1 YILTPENRC 9 32 583.2865600585938 NaN 0 583.2865600585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _YILTPENRC(Carbamidomethyl (C))_ ENSG00000115380|ENST00000355426|EFEMP1;nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-5|EFEMP1 5.230669730166228 0.26989974671959066 1 {I|L} 1 -1 8.2268 0 0 0.70704 0 0 774.3227643537124 273.12360559635005 1047.4463699500625 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.70704 + + 5 + NaN NaN 88931.4 NaN 20340 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24791 97.52 NaN 67283 35 0 26563 0.261 + 30938 VRKPLKPLVKP 11 28 637.9365844726562 NaN 0 637.9365844726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _VRKPLKPLVKP_ REV__ENSG00000136021|ENST00000360820|SCYL2 0 0.34212014346876374 1 A 1 -1 0.71334 0 0 0.055998 0 0 584.083941111525 615.7058809869749 1199.7898220984998 0 0 0 0 0 0 0 0 0 A 0.055998 - 1 + NaN NaN 101558.7 NaN 20341 4448 24780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24793 97.525 NaN 915600 35 0 166590 0.327 + 30825 VPWTELLSL 9 77 529.2996158418201 1056.5846787504402 2 529.30029296875 MULTI HCD FTMS 0 0 0 24792 495315.46875 0.8897203061697271 -3 0.0527801513671875 1 Unmodified _VPWTELLSL_ ENSG00000102699|ENST00000381989|PARP4 92.8221339359638 0.0044520161739443126 1 T{I|L}E[HQ]S{I|L} 7 6 54.97 0 0 5.2027 0 0 230.1634999005875 0 230.1634999005875 0 3.5340874929963917 0 0 0 1.5 0 1.6906140654642812 0 T{I|L}E[HQ]S{I|L} 5.2027 - 647 NaN NaN 230733 NaN 20342 4449 24792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24794 97.53 NaN 425640 35 0 48138 0.261 + -1 YLISFMKAY 9 65 576.296028281309 1150.5775036294178 2 576.8085327148438 MULTI HCD FTMS 0 0 0 24792 7089.08642578125 0.4179435842548554 1 -0.022918701171875 2 Oxidation (M) _YLISFM(Oxidation (M))KAY_ REV__tr|U7SSN0|U7SSN0_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01321PE=4SV=1 21.74664581756881 0.17247014374749275 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]S{M(Oxidation (M))|F}P{I|L}Y 10 -1 + 33.7 0 0 2.929 2.929 79.93 0 0 0 4.282861648111698 6.867646304663072 4.282861648111698 1.8946214640966055 0 0.48264464781038285 1.3979400086720375 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]S{M(Oxidation (M))|F}P{I|L}Y;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[CP]|[EA]}[W{I|L}]{I|L}Y;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[CP]|[EA]}{[DA]|[EG]}{I|L}{I|L}Y;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA][DC]{I|L}{I|L}Y 2.929;2.7643;2.5472;2.0284 -;-;-;- 363 NaN NaN 147483.5 NaN 20343 4449 24792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24795 97.533 NaN 223710 35 0 63020 0.261 + 20821 PHSHWLLLS 9 49 545.2934657581263 1088.5723785830526 2 544.8038940429688 MULTI HCD FTMS 0 0 0 24792 12565.78125 0.662793073107322 2 -0.05914306640625 3 Unmodified _PHSHWLLLS_ REV__ENST00000489944.1_1_1:151106967-151107344:-|nuORF 14.838274106304384 0.23215694253501695 1 [Y{I|L}][HS]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[TV]|[{I|L}S]} 9 -1 + 32.438 0 0 2.9798 2.9798 87.985 0 0 0 12.115379010452425 21.222864502513026 12.115379010452425 32.437646547500954 0 0.4247425010840047 2 0.3807196863200844 0 [Y{I|L}][HS]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[TV]|[{I|L}S]} 2.9798 - 29 NaN NaN 119914.3 NaN 20344 4449 24792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24796 97.537 NaN 296360 35 0 45678 0.261 + 27329 SYQSVFLFL 9 42 552.2924382757011 1102.570323618202 2 552.293212890625 MULTI HCD FTMS 0 0 0 24792 102084.7578125 0.2318985367666805 -6 0.12470245361328125 4 Unmodified _SYQSVFLFL_ ENSG00000077585|ENST00000366592|GPR137B;ENST00000366591.4_1_1:236305922-236343463:+|nuORF 19.361941925380144 0.1930734562688509 1 [YQ]S[VS]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 9 2 + 44.09 0 0 3.9989 3.9989 88.297 0 0 0 2.1522748654137303 30.90288749933073 2.1522748654137303 24.758950235313854 0 1.4247425010840047 0 0 0 [YQ]S[VS]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YQ][YG]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F}{I|L} 3.9989;1.7533 -;- 88 NaN NaN 120450.4 NaN 20345 4449 24792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24797 97.54 NaN 76263 35 0 7008.5 0.261 + 11182 IYIWDLNNF 9 38 599.3021752766502 NaN 0 599.3015747070312 PEAK HCD FTMS 0 0 0 24792 26878.841796875 0.8472659416067247 1 -0.022918701171875 5 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 13.90604991867851 0.22786006501039813 1 P{I|L}{I|L} 3 7 9.9215 0 0 0.82915 0 0 561.2536292624817 309.0820406549438 870.3356699174255 0 0 0 0 0 0 0 0 0 P{I|L}{I|L} 0.82915 - 17 + NaN NaN 99650.5 NaN 20346 4449 24792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24798 97.543 NaN 28595 35 0 3323.3 0.261 + 11139 IYIPSYFDF 9 29 582.7840105656795 NaN 0 582.7854614257812 PEAK HCD FTMS 0 0 0 24792 13465.53125 0.925087876513112 -1 0.03914642333984375 6 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 4.75600775471527 0.27219989241163056 1 {I|L} 1 8 11.99 0 0 1.0304 0 0 774.3216699577277 273.12433801822505 1047.4460079759529 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.0304 + + 1 + NaN NaN 99396.9 NaN 20347 4449 24792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24800 97.548 NaN 101190 35 0 10527 0.327 + 26301 SRQRQRRRWL 10 41 481.2835464289429 1440.8288098870287 3 481.2836608886719 MULTI HCD FTMS 0 0 0 24799 43711.36328125 0.09769267514266483 33 -0.6313552856445312 1 Unmodified _SRQRQRRRWL_ REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF 0.776531954647913 0.4711933975711956 1 K 1 -1 1.9897 0 0 0.13809 0 0 982.5566627988211 327.14475427799067 1309.7014170768118 0 0 0 0 0 0 0 0 0 K 0.13809 - 1 + NaN NaN 93088 NaN 20348 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24801 97.553 NaN 189050 35 0 24963 0.261 + 32051 VYQIFDTFF 9 39 590.2895528789719 1178.5645528247437 2 590.2900390625 MULTI HCD FTMS 0 0 0 24799 106443.2421875 0.10806432869022313 -8 0.17059326171875 2 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 38.175570920033316 0.07371992880350783 1 [{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 4 + 52.893 0 0 4.4879 4.4879 90.336 0 0 0 1.874533344988052 42.43501263708417 1.874533344988052 52.89258754269092 0 2.242992819099939 0 0.3807196863200844 0 [{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4879 - 135 NaN NaN 112972.2 NaN 20349 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24802 97.556 NaN 79061 35 0 4802 0.261 + -1 KRRQLCVRKLM 11 47 510.6340702475364 1528.8803813428092 3 510.63446044921875 MULTI HCD FTMS 0 0 0 24799 43494.07421875 0.47073315855434794 -7 0.14762115478515625 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0 0.41892066650488113 1 {I|L}Y 2 -1 9.464 0 0 0.61901 0 0 640.4038133884825 609.3059176080686 1249.7097309965511 0 0 0 0 0 0 0 0 0 {I|L}Y 0.61901 - 7 + NaN NaN 86760.9 NaN 20350 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24803 97.559 NaN 80102 35 0 6449.6 0.261 -1 MQKPKRKKMLL 11 42 486.95901157080067 1457.855205312602 3 486.9591979980469 MULTI HCD FTMS 0 0 0 24799 16799.826171875 0.24384396478241657 1 -0.036224365234375 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MQKPKRKKM(Oxidation (M))LL_ ENST00000257789.4_1_6:88362964-88367651:+|nuORF 0.5059551277355931 0.4167017191902429 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103625.5 NaN 20351 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24804 97.563 NaN 103970 35 0 10032 0.261 + 13485 KYPENFFLL 9 41 585.8130797502249 1169.6116065672497 2 585.8132934570312 MULTI HCD FTMS 0 0 0 24799 31670.078125 0.436346707569764 3 -0.07871246337890625 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.14443998892849796 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 32.945 0 0 2.8168 0 0 778.3695545880875 0 778.3695545880875 0 16.49166239860314 0 0 0 0.8252574989159953 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.8168 + + 21 NaN NaN 98148.1 NaN 20352 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24805 97.566 NaN 88742 35 0 5560.1 0.262 + 12220 KKWDLFKKFFV 11 45 495.95872205178085 1484.8543367555426 3 495.9583740234375 MULTI HCD FTMS 0 0 0 24799 20440.171875 0.08711937870425399 -25 0.5364532470703125 6 Unmodified _KKWDLFKKFFV_ tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 0.09484139111097674 0.41850472438158626 1 K 1 10 1.9897 0 0 0.134 0 0 1026.5816144428456 327.1455477350219 1353.7271621778675 0 0 0 0 0 0 0 0 0 + K 0.134 + + 6 + NaN NaN 98348.5 NaN 20353 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24806 97.569 NaN 139820 35 0 20869 0.261 + 22874 QYPFPLPVF 9 35 554.2971878997938 1106.5798228663875 2 554.2977905273438 MULTI HCD FTMS 0 0 0 24799 14278.7236328125 0.011122405897047596 -9 0.200103759765625 7 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 28.486842064014134 0.11819662193267319 1 PV{M(Oxidation (M))|F} 3 6 36.198 0 0 3.2712 0 0 745.3803425314301 0 745.3803425314301 0 36.197887582883936 0 0 0 1 0 0 0 + PV{M(Oxidation (M))|F} 3.2712 + + 8 NaN NaN 111359.6 NaN 20354 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24807 97.573 NaN 169940 35 0 14974 0.261 + 13782 KYPSPFFVF 9 55 566.2975694312353 NaN 0 566.2974243164062 PEAK HCD FTMS 0 0 0 24799 19600.203125 0.42741619552929816 3 -0.07871246337890625 8 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 21.536976647645854 0.17708171045360593 1 V{M(Oxidation (M))|F} 2 7 16.454 0 0 1.4553 0 0 165.07873947639285 716.3363741510374 881.4151136274302 0 0 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 1.4553 + + 47 + NaN NaN 125205.8 NaN 20355 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24808 97.576 NaN 65681 35 0 10840 0.261 + 17381 LYQILQGIVF 10 28 597.3497563207267 1192.6849597082532 2 597.8516235351562 MULTI HCD FTMS 0 0 0 24799 25757.486328125 0.7037154490442304 -2 0.06206512451171875 9 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 9.38312468134398 0.42334543440173333 1 Q{I|L} 2 8 12.563 0 0 1.0533 0 0 434.25299951026733 514.2677706354124 948.5207701456798 0 0 0 0 0 0.6989700043360187 0 0 0 + Q{I|L} 1.0533 + + 7 + NaN NaN 88722.1 NaN 20356 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24809 97.579 NaN 24600 35 0 3394.2 0.261 + 32573 WIWDRFHSH 9 22 642.3080062105196 NaN 0 642.3088989257812 PEAK HCD FTMS 0 0 0 24799 5035.2021484375 0.24226110622667388 1 -0.036224365234375 10 Unmodified _WIWDRFHSH_ ENST00000453184.2_1_2:90007722-90008108:+|nuORF 0.6014990680409731 0.29233206172879045 1 {M(Oxidation (M))|F} 1 8 5.4846 0 0 0.42761 0 0 367.7850665208453 764.7363375299436 1132.521404050789 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.42761 + + 1 + NaN NaN 81209.1 NaN 20357 4450 24799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24811 97.584 NaN 540880 35 0 86215 0.327 + 6915 FPVFATVIL 9 56 503.80185495505066 1005.5891569769013 2 503.8023681640625 MULTI HCD FTMS 0 0 0 24810 145592.796875 0.6573710629261599 3 -0.068695068359375 1 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 34.10243960390752 0.09241788333544565 1 {M(Oxidation (M))|F}TV{I|L}{I|L} 5 4 50.886 0 0 5.0603 0 0 414.24641616035314 0 414.24641616035314 0 32.92674056792244 0 0 0 0.8807196863200843 0 0.7614393726401688 0 {M(Oxidation (M))|F}TV{I|L}{I|L} 5.0603 - 60 NaN NaN 167401.7 NaN 20358 4451 24810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24812 97.589 NaN 322660 35 0 87333 0.261 + 4477 EYIQFVPLL 9 40 561.3156213182853 1120.6166897033704 2 561.3157348632812 MULTI HCD FTMS 0 0 0 24810 157375.296875 0.6558748156657931 3 -0.068695068359375 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 39.94969957227396 0.06557568441294001 1 Q{M(Oxidation (M))|F}V[{I|L}P]{I|L} 6 3 43.416 0 0 3.8743 0 0 405.19017226386876 0 405.19017226386876 0 37.93182501400722 0 0 0 1.8494850021680094 0 0 0 + Q{M(Oxidation (M))|F}V[{I|L}P]{I|L} 3.8743 + + 26 NaN NaN 132151.4 NaN 20359 4451 24810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24813 97.592 NaN 134890 35 0 15965 0.261 + 4813 EYVKYKEKG 9 49 572.306668252807 1142.5987835724138 2 572.3257446289062 MULTI HCD FTMS 0 0 0 24810 18523.48828125 0.5151262240460522 1 -0.02288818359375 3 Unmodified _EYVKYKEKG_ REV__nc|ENSG00000122420|P43088-2|PTGFR;REV__nc|ENSG00000122420|P43088-4|PTGFR 2.9952420565917617 0.3283108881486655 1 M{I|L}{M(Oxidation (M))|F}QYP 6 -1 41.146 0 0 3.6011 0 0 0 360.19028650455317 360.19028650455317 32.562893943202624 0 0 0 0 0 0 0 0 M{I|L}{M(Oxidation (M))|F}QYP 3.6011 - 158 + NaN NaN 104084.5 NaN 20360 4451 24810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24814 97.596 NaN 115800 35 0 14980 0.261 -1 TYNMVLNLL 9 46 548.7880004317581 1095.561447930316 2 548.787841796875 MULTI HCD FTMS 0 0 0 24810 24723.966796875 0.37156922820784793 -1 0.036224365234375 4 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 13.90604991867851 0.24021115267848145 1 [YT]{M(Oxidation (M))|F} 3 -1 38.952 0 0 3.5555 0 0 0 681.3588350885374 681.3588350885374 15.993624753846092 0 0 0 0 0.8494850021680094 2 0 0 [YT]{M(Oxidation (M))|F} 3.5555 - 19 + NaN NaN 101253.7 NaN 20361 4451 24810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24815 97.599 NaN 155560 35 0 38431 0.261 + 33047 YDAPFTPGFL 10 37 564.2721889145392 NaN 0 564.2528686523438 PEAK HCD FTMS 0 0 0 24810 5782.02587890625 0.5371887513253263 -3 0.09828948974609375 5 Unmodified _YDAPFTPGFL_ REV__ENSG00000173567|ENST00000651242|ADGRF3;REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF;REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3;REV__nc|ENSG00000173567|Q8IZF5-3|ADGRF3;REV__nc|ENSG00000173567|Q8IZF5|ADGRF3 6.723162845929126 0.3344301934401713 1 {M(Oxidation (M))|F} 1 -1 9.6041 0 0 0.85254 0 0 131.0962447882967 845.3440035455686 976.4402483338654 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.85254 + + 4 + NaN NaN 112790 NaN 20362 4451 24810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24816 97.602 NaN 50528 35 0 5559.3 0.263 + -1 RQWCRCIRM 9 30 436.8796296080985 1307.6170594244957 3 437.2139587402344 MULTI HCD FTMS 0 0 0 24810 28336.44140625 0.582233618409235 -1 0.036224365234375 6 Carbamidomethyl (C) _RQWC(Carbamidomethyl (C))RCIRM_ REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF 0.235843874597859 0.3492291811235561 1 N 1 -1 3.0989 0 0 0.23699 0 0 871.6726757348457 318.88544641666255 1190.5581221515083 0 0 0 0 0 0 0 0 0 N 0.23699 - 3 + NaN NaN 104691.1 NaN 20363 4451 24810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24818 97.607 NaN 202300 35 0 37559 0.327 + 17332 LYPSTLFLL 9 36 533.8126619048485 1065.6107708764969 2 533.81298828125 MULTI HCD FTMS 0 0 0 24817 119047.5546875 0.2727589928330558 4 -0.091552734375 1 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 57.47134341890925 0.0211188941628804 1 [Y{I|L}][PS]T{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 63.918 0 0 5.9983 5.9983 90.06 0 0 0 14.247425010840047 16.478174818886373 14.247425010840047 14.247425010840047 0 1.805462187404089 1.3010299956639813 0 0 + + [Y{I|L}][PS]T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 5.9983;4.6613 +;- + 89 NaN NaN 116647.4 NaN 20364 4452 24817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24819 97.612 NaN 176640 35 0 24236 0.261 + 18033 MLPPLETPLF 10 57 579.3155949558706 NaN 0 579.2957153320312 PEAK HCD FTMS 0 0 0 24817 5347.064453125 0.8411896715486724 2 -0.045806884765625 2 Unmodified _MLPPLETPLF_ ENSG00000187210|ENST00000376730|GCNT1 3.5964929083625545 0.337106189561315 1 {I|L}WS 3 9 10.177 0 0 0.87992 0 0 605.3418089529536 162.05552087955314 767.3973298325067 0 0 0 0 0 0 0 0 0 {I|L}WS 0.87992 - 22 + NaN NaN 112403.5 NaN 20365 4452 24817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24820 97.615 NaN 99518 35 0 12211 0.261 + 8337 GYGLEYQQPF 10 37 601.2805687759978 1200.5465846187956 2 601.281005859375 MULTI HCD FTMS 0 0 0 24817 44305.5859375 0.3728870028008368 -6 0.1348114013671875 3 Unmodified _GYGLEYQQPF_ CAMSAP1-SDCCAG3|1|fusion;ENSG00000165689|ENST00000357365|ENTR1;ENST00000468963.1_1_9:139301473-139302406:-|nuORF;nc|ENSG00000165689|Q96C92-2|ENTR1;nc|ENSG00000165689|Q96C92-3|ENTR1;nc|ENSG00000165689|Q96C92-4|ENTR1 14.405379775768559 0.37636895476610294 1 [YV]Q{I|L}{M(Oxidation (M))|F}D 6 8 76.643 0 0 6.384 0 0 0 432.1554049127563 432.1554049127563 51.46591250700361 0 0 0 0 2.1989700043360187 2 0.3494850021680094 0.4247425010840047 [YV]Q{I|L}{M(Oxidation (M))|F}D 6.384 - 201 + NaN NaN 97496.8 NaN 20366 4452 24817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24821 97.619 NaN 36472 35 0 6055 0.261 + 11509 IYRGDHAWF 9 28 582.7840105656795 NaN 0 582.8026733398438 PEAK HCD FTMS 0 0 0 24817 12834.7177734375 0.8817507152325976 2 -0.045806884765625 4 Unmodified _IYRGDHAWF_ REV__ENST00000555846.1_1_14:55498629-55509730:+|nuORF 5.230669730166228 0.26989974671959066 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90636.4 NaN 20367 4452 24817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24822 97.622 NaN 33284 35 0 4377.7 0.261 + -1 GQVFVMCLADK 11 28 642.3070678710938 NaN 0 642.3070678710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _GQVFVM(Oxidation (M))C(Carbamidomethyl (C))LADK_ REV__PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant 0.9622753412299311 0.33939044544643376 1 T 1 -1 0.71334 0 0 0.055617 0 0 558.9088034162124 619.6207979791624 1178.5296013953748 0 0 0 0 0 0 0 0 0 T 0.055617 - 2 + NaN NaN 86996.3 NaN 20368 4452 24817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24824 97.627 NaN 627430 35 0 63666 0.327 + 29043 TYFFTAVLI 9 69 537.796959244543 1073.579365555886 2 537.79736328125 MULTI HCD FTMS 0 0 0 24823 211448.59375 0.5462970535820181 1 -0.02620697021484375 1 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 107.99703571036002 0.003269392969029945 1 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 9 0 + 93.017 0 0 8.6642 8.6642 96.544 0 0 0 18.116742845273066 79.20486885197654 18.116742845273066 32.29364375124895 0 2.4674165578762484 1.3979400086720375 1.2302046884880937 0 + + [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L};[{I|L}V][MN]{[DS]|[MA]|[CV]|TT}AV{I|L}{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}ATV{I|L}{I|L};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT}AV{I|L}{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L}{I|L}S{I|L};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{I|L}{I|L} 8.6642;5.6562;5.2145;3.8473;2.8091;2.7731 +;-;-;-;-;- + 312 NaN NaN 182370.1 NaN 20369 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24825 97.631 NaN 233600 35 0 49062 0.261 + 29205 TYLDIPLVI 9 40 523.8100047934591 1045.6054566537182 2 523.8103637695312 MULTI HCD FTMS 0 0 0 24823 88631.7109375 0.4868914907304922 3 -0.07195281982421875 2 Unmodified _TYLDIPLVI_ ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76-2|USP47;nc|ENSG00000170242|Q96K76|USP47 21.74664581756881 0.17247014374749275 1 V{I|L} 2 7 24.464 0 0 2.3397 0 0 815.4431019513687 0 815.4431019513687 0 17.245462655597095 0 0 0 0.5 0 0 0 + V{I|L} 2.3397 + + 17 NaN NaN 115378.6 NaN 20370 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24826 97.635 NaN 130360 35 0 8222.5 0.261 + -1 YSQLTLQCL 9 53 563.2829079896297 1124.5512630460594 2 563.283447265625 MULTI HCD FTMS 0 0 0 24823 31460.892578125 0.46277343260701437 -5 0.140777587890625 3 Carbamidomethyl (C) _YSQLTLQC(Carbamidomethyl (C))L_ REV__ENSG00000254656|ENST00000649591|RTL1 13.042465956692817 0.2476723265019929 1 {I|L}{M(Oxidation (M))|F}{I|L} 3 -1 26.682 0 0 2.3727 0 0 733.3007069318375 0 733.3007069318375 0 11.977437731477421 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L} 2.3727 - 41 NaN NaN 101771.5 NaN 20371 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24827 97.638 NaN 49233 35 0 5036.4 0.261 + 6535 FPKKRCHL 8 44 514.7932456410547 1027.5719383489093 2 514.7931518554688 MULTI HCD FTMS 0 0 0 24823 4312.39501953125 0.09552162479663306 4 -0.08824920654296875 4 Unmodified _FPKKRCHL_ REV__ENSG00000159882|ENST00000429154|ZNF230;REV__ENSG00000178386|ENST00000434772|ZNF223;REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF;REV__ZNF223|p.N449Kfs*11|1|0.28|ENSG00000178386|chr19:44067167-44067168|-/A|frameshift_variant 8.593279151180031 0.5292430274356741 1 VPE 3 -1 31.198 0 0 3.0361 0 0 684.3825550763687 0 684.3825550763687 0 31.197887582883936 0 0 0 0.5 0 0 0 VPE 3.0361 - 8 NaN NaN 83258 NaN 20372 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24828 97.641 NaN 59368 35 0 4670.6 0.261 + 12136 KKKKKKKKKSF 11 42 469.32865649952697 NaN 0 469.3287048339844 PEAK HCD FTMS 0 0 0 24823 14979.9521484375 0.6043657911807147 -30 0.6310272216796875 5 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 E 1 11 6.3515 0 0 0.67812 0 0 467.8498961515946 336.7215670221313 804.5714631737259 0 0 0 0 0 0 0 0.3252574989159953 0 E 0.67812 - 2 + NaN NaN 95071.1 NaN 20373 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24829 97.645 NaN 46942 35 0 7736.6 0.261 + -1 NYILLMGLCF 10 31 622.316055325658 NaN 0 622.316162109375 PEAK HCD FTMS 0 0 0 24823 18050.916015625 0.8289231013188137 1 -0.02620697021484375 6 Carbamidomethyl (C) _NYILLMGLC(Carbamidomethyl (C))F_ REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|7|1|sense;REV__SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|14|3|sense;REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense 7.289230182591677 0.3339457182549222 1 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.1057912159659 849.4061208947174 1126.5119121106834 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 2 + NaN NaN 92174.9 NaN 20374 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24830 97.648 NaN 37600 35 0 4796.8 0.261 + -1 LYISVESPCP 10 35 582.7840105656795 NaN 0 582.7820434570312 PEAK HCD FTMS 0 0 0 24823 12880.3330078125 0.8848845017517605 3 -0.07195281982421875 7 Carbamidomethyl (C) _LYISVESPC(Carbamidomethyl (C))P_ REV__ENST00000481082.1_1_1:157512505-157514867:-|nuORF 10.823927491677226 0.33092050725491123 1 {I|L} 1 -1 11.99 0 0 1.0304 0 0 774.3205713249152 273.12507044010005 1047.4456417650154 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0304 + + 3 + NaN NaN 92563.5 NaN 20375 4453 24823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24832 97.653 NaN 129540 35 0 31078 0.326 + 11289 IYLTFPVAMF 10 40 609.3171506911058 1216.6197484490115 2 609.3175048828125 MULTI HCD FTMS 0 0 0 24831 65592.7421875 0.4283267614060843 6 -0.1341705322265625 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 54.773552608820026 0.0604291769046433 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 [Y{I|L}]{I|L} + + 34.481 8.072 2.0738 2.8342 2.8342 59.187 0 0 0 0 26.408875981856212 0 0 0 1.6989700043360187 0 0 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8342 + + 29 + NaN NaN 108466.2 NaN 20376 4454 24831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24833 97.658 NaN 65927 35 0 22891 0.261 + 17790 MFDYLHLSVI 10 25 619.3181695982589 1236.6217862633177 2 619.3180541992188 MULTI HCD FTMS 0 0 0 24831 49444.6015625 0.47081125389722983 3 -0.062042236328125 2 Unmodified _MFDYLHLSVI_ FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant 3.2813086475875832 0.45793521633868084 1 V{I|L} 2 8 20.969 0 0 1.6957 0 0 1006.4627228853788 0 1006.4627228853788 0 12.016675202793719 0 0 0 0 0 0 0 + V{I|L} 1.6957 + + 1 NaN NaN 97662.7 NaN 20377 4454 24831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24834 97.661 NaN 103100 35 0 23839 0.264 + -1 RQTFMKGCINC 11 43 453.2095991595399 NaN 0 453.2093505859375 PEAK HCD FTMS 0 0 0 24831 10488.4189453125 0.18789807100844305 -106 2.1732940673828125 3 Carbamidomethyl (C) _RQTFMKGC(Carbamidomethyl (C))INC_ REV__ENSG00000169635|ENST00000407464|HIC2;REV__nc|ENSG00000169635|Q96JB3-2|HIC2 1.1097533296519684 0.33897209286470975 1 T 1 -1 2.4743 0 0 0.27358 0 0 636.1568559345111 164.17432581119377 800.3311817457048 0 0 0 0 0 0 0 0 0 T 0.27358 + + 1 + NaN NaN 97921.7 NaN 20378 4454 24831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24835 97.664 NaN 149050 35 0 22096 0.261 + 12673 KWFKQRLAKWR 11 45 516.3096134683685 1545.9070110053053 3 516.3106079101562 MULTI HCD FTMS 0 0 0 24831 28557.009765625 0.7082345381286439 -7 0.1735076904296875 4 Unmodified _KWFKQRLAKWR_ ENSG00000171476|ENST00000420433|HOPX;ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX 0.09484139111097674 0.41850472438158626 1 {I|L} 1 10 6.9897 0 0 0.45214 0 0 124.05332555784305 1305.72922317086 1429.782548728703 0 0 0 0 0 0 0 0 0 + {I|L} 0.45214 + + 1 + NaN NaN 104307.3 NaN 20379 4454 24831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24836 97.668 NaN 104390 35 0 21744 0.261 + 30830 VPYRRFQN 8 51 540.2908616176643 1078.5671703021285 2 540.2916870117188 MULTI HCD FTMS 0 0 0 24831 27036.115234375 0.4070940129717279 4 -0.0816497802734375 5 Unmodified _VPYRRFQN_ CPNE1|p.R494W|1|0.32|ENSG00000214078|chr20:35626375-35626375|G/A|missense_variant;ENSG00000214078|ENST00000397443|CPNE1;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000473373.1_1_20:34214440-34214716:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF 8.593279151180031 0.5292430274356741 1 VPW 3 6 26.198 0 0 2.429 0 0 0 693.3451632135374 693.3451632135374 19.20818753952375 0 0 0 0 0 0 0 0 VPW 2.429 - 12 + NaN NaN 112818.6 NaN 20380 4454 24831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24838 97.673 NaN 586040 35 0 96418 0.327 + 30826 VPWTELLSL 9 75 529.2996158418201 1056.5846787504402 2 529.3001708984375 MULTI HCD FTMS 0 0 0 24837 233979.546875 0.42029043552474155 3 -0.06204986572265625 1 Unmodified _VPWTELLSL_ ENSG00000102699|ENST00000381989|PARP4 74.42276476219924 0.007657080072768255 1 [VP]W{[ET]|[MV]}{I|L}{I|L}S{I|L} 9 0 + 56.181 0 0 5.3172 5.3172 87.749 0 0 0 4.058415520056542 29.983193732736027 4.058415520056542 9.827796776480469 0 1.4247425010840047 1.0969100130080565 0.6861818737241735 0 + + [VP]W{[ET]|[MV]}{I|L}{I|L}S{I|L};[VP]W{[ET]|[MV]}{I|L}{I|L}TV 5.3172;4.3871 +;- + 358 NaN NaN 161674.7 NaN 20381 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24839 97.677 NaN 397320 35 0 52617 0.261 + 20674 PFLPASNLFF 10 64 576.8081270340723 1151.6017011349445 2 576.8084106445312 MULTI HCD FTMS 0 0 0 24837 196001.953125 0.7133169441906703 3 -0.06204986572265625 2 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 72.96794272382148 0.014068588219715357 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 76.534 0 0 6.6459 6.6459 91.719 0 0 0 21.249387366083 58.45175337211302 21.249387366083 16.664539485499255 0 2.5669015600442577 1.3979400086720375 0 0.75 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WP]D{I|L}[KS]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}P[PG][QA]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6459;5.1988;2.5869;2.2951 +;-;-;- + 316 NaN NaN 143984.4 NaN 20382 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24840 97.681 NaN 509020 35 0 74405 0.261 + 29486 TYVGYGVLTLF 11 53 616.8317855478571 1231.649018162514 2 616.8319091796875 MULTI HCD FTMS 0 0 0 24837 121174.8984375 0.9308733642904521 3 -0.06204986572265625 3 Unmodified _TYVGYGVLTLF_ ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF 61.60191391372663 0.033776152178474975 1 R{I|L}T{I|L}{M(Oxidation (M))|F} 5 7 56.727 0 0 4.6058 0 0 583.2637597240788 0 583.2637597240788 0 47.774334638038454 0 0 0 1.8807196863200843 0 0.4247425010840047 0.3494850021680094 R{I|L}T{I|L}{M(Oxidation (M))|F} 4.6058 - 179 NaN NaN 155559 NaN 20383 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24841 97.684 NaN 110730 35 0 5966.4 0.261 + 11240 IYLFNWNGF 9 51 587.2890844932334 1172.5636160532667 2 587.2896118164062 MULTI HCD FTMS 0 0 0 24837 68478.2734375 0.8610491904669845 3 -0.06204986572265625 4 Unmodified _IYLFNWNGF_ ENSG00000120314|ENST00000358337|WDR55;ENST00000506393.5_1_5:140048657-140049236:+|nuORF;nc|ENSG00000120314|Q9H6Y2-2|WDR55;WDR55|p.D380*|1|0.17|ENSG00000120314|chr5:140669636-140669637|TG/-|frameshift_variant 57.47134341890925 0.0211188941628804 1 [Y{I|L}]{I|L}{M(Oxidation (M))|F}NWN{[CT]|[{M(Oxidation (M))|F}G]} 9 0 + 68.918 0 0 5.8776 5.8776 87.777 0 0 0 24.13734275855269 58.74098423245101 24.13734275855269 9.208187539523749 0 1.305462187404089 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}{M(Oxidation (M))|F}NWN{[CT]|[{M(Oxidation (M))|F}G]};[Y{I|L}]{I|L}{M(Oxidation (M))|F}GGWN{[CT]|[{M(Oxidation (M))|F}G]};[Y{I|L}]{I|L}{M(Oxidation (M))|F}NWGG{[CT]|[{M(Oxidation (M))|F}G]};[Y{I|L}]{I|L}{M(Oxidation (M))|F}GGWGG{[CT]|[{M(Oxidation (M))|F}G]};[Y{I|L}][MD]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][MD]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 5.8776;5.0923;5.0923;4.3107;1.9488;1.4353 +;-;-;-;-;- + 260 NaN NaN 97157.9 NaN 20384 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24842 97.687 NaN 87568 35 0 12517 0.261 + 17041 LYIYYQIL 8 43 544.804071765438 1087.593590597676 2 544.8043823242188 MULTI HCD FTMS 0 0 0 24837 15295.3603515625 0.12974431245471257 7 -0.147369384765625 5 Unmodified _LYIYYQIL_ ENSG00000164077|ENST00000296473|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A 10.183394434864962 0.5188676124868831 1 [Y{I|L}]{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 5 5 20.942 0 0 1.9255 0 0 0 477.27099473269476 477.27099473269476 13.952424927286842 0 0 0 0 0.5 2 0 0 [Y{I|L}]{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 1.9255 - 18 NaN NaN 94969.7 NaN 20385 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24843 97.691 NaN 62041 35 0 6085.1 0.261 -1 AFFDIDQC 8 34 508.2121250590242 NaN 0 508.2122497558594 PEAK HCD FTMS 0 0 0 24837 16254.4716796875 0.8514101130130368 2 -0.04244232177734375 6 Carbamidomethyl (C) _AFFDIDQC(Carbamidomethyl (C))_ ENSG00000128309|ENST00000429360|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;nc|ENSG00000128309|P25325|MPST 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90580.9 NaN 20386 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24844 97.694 NaN 60574 35 0 8881.3 0.261 + -1 YLLTMVCTF 9 27 582.2776504183553 NaN 0 582.278076171875 PEAK HCD FTMS 0 0 0 24837 6479.15478515625 0.44421806853165396 -1 0.01959991455078125 7 Carbamidomethyl (C),Oxidation (M) _YLLTM(Oxidation (M))VC(Carbamidomethyl (C))TF_ REV__ENSG00000103257|ENST00000261622|SLC7A5 2.0597508629832335 0.2852655770354268 1 E 1 -1 5.4846 0 0 0.47177 0 0 525.2316181201105 505.24494348697505 1030.4765616070856 0 0 0 0 0 0 0 0 0 E 0.47177 - 2 + NaN NaN 96873.3 NaN 20387 4455 24837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24846 97.699 NaN 1428800 35 0 212800 0.327 + 32052 VYQIFDTFF 9 59 590.2895528789719 1178.5645528247437 2 590.2898559570312 MULTI HCD FTMS 0 0 0 24845 464773.40625 0.47185171277479887 -2 0.045745849609375 1 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 131.26759243768294 0.0005280990274065272 1 [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 104.35 0 0 8.8541 8.8541 95.174 0 0 0 17.914478256039672 16.478174818886373 16.478174818886373 15.757659435244733 0 2.8494850021680094 1.3979400086720375 0.8494850021680094 0.6549471895720985 + + [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][AG]{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]N{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GG{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}AAT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Q[YV];[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}Q[YV];[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]} 8.8541;7.5171;7.3341;6.7358;6.5528;5.4914;4.3441;2.54;2.3906;1.9264 +;-;-;-;-;-;-;-;-;- + 885 NaN NaN 303284.1 NaN 20388 4456 24845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24847 97.703 NaN 262650 35 0 36385 0.261 -1 0 51 565.0017065514671 3947.9610105940696 7 565.2891235351562 MULTI HCD FTMS 0 0 0 24845 96189.203125 0.4718926808104207 -5 0.11444091796875 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 16.99 0 0 0.43034 0 0 3782.8822122315682 0 3782.8822122315682 0 13.89075625191822 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.43034 - 37 + NaN NaN 127417.8 NaN 20389 4456 24845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24848 97.707 NaN 113170 35 0 5919.7 0.261 + -1 KRRQLCVRKLM 11 55 510.6340702475364 1528.8803813428092 3 510.6344909667969 MULTI HCD FTMS 0 0 0 24845 60750.1484375 0.6574943775743556 -1 0.02614593505859375 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0 0.41892066650488113 1 {I|L} 1 -1 6.9897 0 0 0.45718 0 0 640.4052810387012 772.3671969049436 1412.7724779436448 0 0 0 0 0 0 0 0 0 {I|L} 0.45718 + + 2 + NaN NaN 101567 NaN 20390 4456 24845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24849 97.71 NaN 70971 35 0 5754.2 0.261 + 23773 RRLPYVTRERI 11 50 486.95901157080067 1457.855205312602 3 486.9590759277344 MULTI HCD FTMS 0 0 0 24845 28214.37109375 0.4095223391573076 7 -0.13085174560546875 4 Unmodified _RRLPYVTRERI_ REV__ENST00000463670.5_1_1:156252735-156254976:+|nuORF 0.09484139111097674 0.41850472438158626 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89222.8 NaN 20391 4456 24845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24851 97.715 NaN 1486500 35 0 268650 0.327 + 22875 QYPFPLPVF 9 64 554.2971878997938 1106.5798228663875 2 554.2974853515625 MULTI HCD FTMS 0 0 0 24850 919424.5 0.7161853358650493 -2 0.04244232177734375 1 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 137.58523961978855 0.00014495867019203413 1 [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F} 9 0 + 97.362 0 0 8.7984 8.7984 97.918 0 0 0 24.053783369835315 67.23828478979911 24.053783369835315 64.50563815874494 0 3.0356668758921828 0 0 1.8411290632962718 + + [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F};[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[RV]{[ET]|[MV]}{I|L} 8.7984;2.9691 +;- + 326 NaN NaN 310862.8 NaN 20392 4457 24850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24852 97.72 NaN 93398 35 0 13365 0.262 + 22683 QWSRLRRRAGR 11 46 481.2835464289429 1440.8288098870287 3 481.2835388183594 MULTI HCD FTMS 0 0 0 24850 83166.4921875 0.18587288279598288 40 -0.74468994140625 2 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 0.4545168274142398 0.41692731010159206 1 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.17172 0 0 835.497280201285 455.2513521783813 1290.7486323796663 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.17172 - 2 + NaN NaN 91799.9 NaN 20393 4457 24850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24853 97.723 NaN 129430 35 0 10063 0.261 + -1 VRKYKEKKLMF 11 55 495.95872205178085 1484.8543367555426 3 495.9589538574219 MULTI HCD FTMS 0 0 0 24850 95013.0859375 0.40496141941804936 -18 0.41661834716796875 3 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 0.4545168274142398 0.41692731010159206 1 K 1 -1 1.7827 0 0 0.12006 0 0 1070.6076154194081 283.11887537174067 1353.7264907911488 0 0 0 0 0 0 0 0 0 K 0.12006 + + 2 + NaN NaN 97508.8 NaN 20394 4457 24850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24854 97.726 NaN 250430 35 0 57083 0.261 + 4478 EYIQFVPLL 9 47 561.3156213182853 1120.6166897033704 2 561.3157348632812 MULTI HCD FTMS 0 0 0 24850 100433.484375 0.4185650121660902 9 -0.18305206298828125 4 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 38.175570920033316 0.07371992880350783 1 {M(Oxidation (M))|F}VP{I|L}{I|L} 5 4 48.628 0 0 4.3394 0 0 533.2483998029312 0 533.2483998029312 0 27.481427974198454 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}VP{I|L}{I|L} 4.3394 + + 95 NaN NaN 112463.4 NaN 20395 4457 24850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24855 97.73 NaN 85646 35 0 21413 0.261 + -1 YLLIRLRM 8 34 547.3325525382237 NaN 0 547.332763671875 PEAK HCD FTMS 0 0 0 24850 12524.1484375 0.34075874566237463 8 -0.16349029541015625 5 Oxidation (M) _YLLIRLRM(Oxidation (M))_ REV__ENST00000261708.8_1_17:30214316-30221752:-|nuORF 2.8892196856762586 0.38822285293237185 1 S 1 -1 6.9897 0 0 0.6397 0 0 164.15972069969104 838.4341524713499 1002.593873171041 0 0 0 0 0 0 0 0 0 S 0.6397 - 2 + NaN NaN 102308 NaN 20396 4457 24850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24857 97.735 NaN 68171 35 0 8577.3 0.327 + 13486 KYPENFFLL 9 31 585.8130797502249 1169.6116065672497 2 585.8135375976562 MULTI HCD FTMS 0 0 0 24856 42049.51953125 0.5793534619628105 11 -0.2254791259765625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3641834943375 0 778.3641834943375 0 31.197887582883936 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 7 NaN NaN 100991.4 NaN 20397 4458 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24858 97.739 NaN 158760 35 0 54791 0.261 -1 0 23 581.2544668015607 580.2471903349607 1 581.2552490234375 MULTI HCD FTMS 0 0 0 24856 21987.970703125 0.5387252655668822 -2 0.0359039306640625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103890.4 NaN 20398 4458 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24859 97.743 NaN 58007 35 0 9904.1 0.261 + 35240 YVPAMIELF 9 33 541.7817007984524 NaN 0 541.78173828125 PEAK HCD FTMS 0 0 0 24856 22162.177734375 0.7204249853052042 -1 0.0196075439453125 3 Unmodified _YVPAMIELF_ REV__ENSG00000140688|ENST00000327237|RUSF1 5.230669730166228 0.26989974671959066 1 {I|L} 1 -1 3.9794 0 0 0.36794 0 0 803.385989632258 162.05654321842033 965.4425328506783 0 0 0 0 0 0 0 0 0 {I|L} 0.36794 + + 12 + NaN NaN 93104.9 NaN 20399 4458 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24860 97.746 NaN 120610 35 0 31301 0.261 + 11414 IYPSLIYII 9 47 547.8288726619645 1093.643192390729 2 547.8284301757812 MULTI HCD FTMS 0 0 0 24856 33672.96875 0.8107927875646109 -3 0.06204986572265625 4 Unmodified _IYPSLIYII_ ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;nc|ENSG00000177058|Q8NBW4-4|SLC38A9 12.531546534597751 0.2520865569484384 1 V 1 9 8.4949 0 0 0.77675 0 0 686.4015877831263 305.1590975397094 991.5606853228358 0 0 0 0 0 0.5 0 0 0 V 0.77675 - 8 + NaN NaN 97355.8 NaN 20400 4458 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24862 97.751 NaN 475720 35 0 48605 0.327 + 29044 TYFFTAVLI 9 58 537.796959244543 1073.579365555886 2 537.7973022460938 MULTI HCD FTMS 0 0 0 24861 225964.828125 0.5838010914549042 7 -0.14713287353515625 1 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 88.90359156742426 0.00455469703666567 1 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 9 0 + 84.816 0 0 7.9003 7.9003 96.789 0 0 0 19.990823894397565 73.84697482522071 19.990823894397565 84.81607495530127 0 2.0752574989159953 1.5228787452803376 0.7742275032520141 0 + + [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 7.9003 + + 101 NaN NaN 165675 NaN 20401 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24863 97.755 NaN 192990 35 0 30283 0.261 + 20544 PEAVVAVLIL 10 27 512.325932362796 1022.6373117923921 2 512.3262329101562 MULTI HCD FTMS 0 0 0 24861 243585.1875 0.3567571352790973 -7 0.143768310546875 2 Unmodified _PEAVVAVLIL_ REV__ENSG00000171561|ENST00000641541|OR2AT4 19.256988751693697 0.33098864134661865 1 V{I|L}{I|L}{I|L} 4 -1 44.68 0 0 4.3691 0 0 566.3058949201187 0 566.3058949201187 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 V{I|L}{I|L}{I|L} 4.3691 + + 23 NaN NaN 108406.8 NaN 20402 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24864 97.759 NaN 130610 35 0 13003 0.261 + 31441 VYCCLGLFHF 10 47 601.2805687759978 1200.5465846187956 2 601.28076171875 MULTI HCD FTMS 0 0 0 24861 98398.125 0.8281434752771594 1 -0.0362091064453125 3 Unmodified _VYCCLGLFHF_ REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF 12.531546534597751 0.39389615866941496 1 VYQ{I|L}{M(Oxidation (M))|F}D 6 -1 83.123 0 0 6.9237 0 0 0 432.1540621393188 432.1540621393188 51.92471268044436 0 0 0 0 2.055462187404089 2 0 0.3807196863200844 VYQ{I|L}{M(Oxidation (M))|F}D 6.9237 - 196 + NaN NaN 105336.2 NaN 20403 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24865 97.762 NaN 417390 35 0 69103 0.262 + 31018 VSLWELLF 8 50 503.78411535740463 1005.5536777816093 2 503.7842102050781 MULTI HCD FTMS 0 0 0 24861 99214.265625 0.33038992039376347 -10 0.225799560546875 4 Unmodified _VSLWELLF_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 19.438996006549623 0.45076845602799126 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 5 38.5 0 0 3.8287 0 0 614.306430392488 0 614.306430392488 0 17.53083433768431 0 0 0 1.2302046884880937 0 0 0 + {I|L}{I|L}{M(Oxidation (M))|F} 3.8287 + + 40 NaN NaN 146249.2 NaN 20404 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24866 97.766 NaN 172440 35 0 14710 0.261 + 5529 FLEDHGLLVT 10 51 572.306668252807 1142.5987835724138 2 572.3261108398438 MULTI HCD FTMS 0 0 0 24861 23093.359375 0.642211382368175 7 -0.14713287353515625 5 Unmodified _FLEDHGLLVT_ ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 6.723162845929126 0.4397169348982109 1 M{I|L}{M(Oxidation (M))|F}QYP 6 9 41.389 0 0 3.6223 0 0 0 360.1904390924438 360.1904390924438 24.388793896675264 0 0 0 0 0.3252574989159953 0 0 0 M{I|L}{M(Oxidation (M))|F}QYP 3.6223 - 232 + NaN NaN 113670.6 NaN 20405 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24867 97.769 NaN 55041 35 0 8099.9 0.261 + 34684 YPTVLTFIL 9 29 533.8126619048485 1065.6107708764969 2 533.81298828125 MULTI HCD FTMS 0 0 0 24861 39479.96875 0.0904555876145284 11 -0.22209930419921875 6 Unmodified _YPTVLTFIL_ ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.005 0 0 3.285 0 0 674.3661314742858 0 674.3661314742858 0 32.53083433768431 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.285 + + 17 NaN NaN 96776.1 NaN 20406 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24868 97.772 NaN 94508 35 0 18417 0.261 + 992 AYFNFPELL 9 27 557.2841215605249 1112.5536901878497 2 557.2846069335938 MULTI HCD FTMS 0 0 0 24861 29966.341796875 0.5268805901426951 9 -0.18627166748046875 7 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F} 1 8 8.9794 0 0 0.8071 0 0 470.27342097983836 492.19013391666255 962.4635548965009 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.8071 + + 1 + NaN NaN 97613.9 NaN 20407 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24869 97.776 NaN 121690 35 0 15033 0.261 + 30525 VMPYVDILF 9 44 548.7892149994781 NaN 0 548.7886352539062 PEAK HCD FTMS 0 0 0 24861 25456.3203125 0.7379331203530402 1 -0.0362091064453125 8 Unmodified _VMPYVDILF_ DNAJC19-ADK|1|fusion;DNAJC19-ADK|2|fusion;ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-2|ADK;nc|ENSG00000156110|P55263-4|ADK;VCL-ADK|11|fusion;VCL-ADK|13|fusion;VCL-ADK|3|fusion;VCL-ADK|6|fusion;VCL-ADK|7|fusion;VCL-ADK|9|fusion 11.640296217721598 0.23883959125015683 1 A 1 9 9.732 0 0 0.88831 0 0 859.4481829513014 162.05585657291252 1021.5040395242139 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.88831 - 7 + NaN NaN 96198 NaN 20408 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24870 97.779 NaN 83979 35 0 14796 0.261 + 17382 LYQILQGIVF 10 35 597.3502831622227 NaN 0 597.3501586914062 PEAK HCD FTMS 0 0 0 24861 33308.33984375 0.9530504777471579 -6 0.12416839599609375 9 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 22.736283301280096 0.25846987392193327 1 V{[VA]|[{I|L}G]}Q 4 8 14.935 0 0 1.2522 0 0 165.0772009906578 627.3516939752561 792.428894965914 0 0 0 0 0 1.1747425010840047 0 0 0 V{[VA]|[{I|L}G]}Q 1.2522 - 25 + NaN NaN 94233 NaN 20409 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24871 97.782 NaN 180220 35 0 46470 0.263 + 30708 VPFPPISW 8 46 471.7578564090068 NaN 0 471.75811767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VPFPPISW_ REV__ENSG00000072756|ENST00000251607|TRNT1;REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 14.581692164780916 0.38795613832665576 1 P 1 -1 6.9897 0 0 0.7424 0 0 99.06909110795841 742.3571514909979 841.4262425989564 0 0 0 0 0 0 0 0 0 P 0.7424 + + 2 + NaN NaN 108702.9 NaN 20410 4459 24861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24873 97.787 NaN 324760 35 0 96150 0.327 + 8524 HAHCLPFLL 9 39 525.7806142449685 NaN 0 525.7974853515625 PEAK HCD FTMS 0 0 0 24872 8105.64453125 0.8426877256869304 -1 0.0362091064453125 1 Unmodified _HAHCLPFLL_ ENSG00000156574|ENST00000287139|NODAL 9.347437153973935 0.2499504662953367 1 {I|L}{M(Oxidation (M))|F}P{I|L} 4 6 14.412 0 0 1.3732 0 0 131.06240074604915 445.1731051080688 576.235505854118 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}P{I|L} 1.3732 - 41 + NaN NaN 148237.4 NaN 20411 4460 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24875 97.794 NaN 235540 35 0 25098 0.327 + -1 YLLWPRSAM 9 57 576.7966950311557 NaN 0 576.8084716796875 PEAK HCD FTMS 0 0 0 24874 26723.25390625 1 0 0 1 Oxidation (M) _YLLWPRSAM(Oxidation (M))_ REV__ENSG00000186265|ENST00000334529|BTLA 12.531546534597751 0.23452071659215576 1 {M(Oxidation (M))|F}{I|L}NS 4 -1 11.186 0 0 0.97133 0 0 165.0555187548219 522.2702730768186 687.3257918316406 0 0 0 0 0 0 0 0 0.4247425010840047 {M(Oxidation (M))|F}{I|L}NS 0.97133 - 70 + NaN NaN 123919.1 NaN 20412 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24876 97.798 NaN 189980 35 0 28957 0.261 + 32449 WDLTPLILS 9 49 529.2996158418201 1056.5846787504402 2 529.3001708984375 MULTI HCD FTMS 0 0 0 24874 48166.609375 0.08652023436383471 9 -0.17877197265625 2 Unmodified _WDLTPLILS_ RNF213|p.R4927W|1|0.5|ENSG00000173821|chr17:80386748-80386748|C/T|missense_variant 6.723162845929126 0.3000504726104499 1 [YV]{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{M(Oxidation (M))|F}{I|L} 7 7 15.908 0 0 1.5056 0 0 0 129.1146473476796 129.1146473476796 -2.9047616597336656 0 -2.9047616597336656 0 0 0 1.3979400086720375 0 0 [YV]{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{M(Oxidation (M))|F}{I|L} 1.5056 - 108 NaN NaN 109082.7 NaN 20413 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24877 97.802 NaN 126540 35 0 30742 0.261 + 11290 IYLTFPVAMF 10 37 609.3171506911058 1216.6197484490115 2 609.3176879882812 MULTI HCD FTMS 0 0 0 24874 71429.203125 0.46643939899465126 13 -0.24073028564453125 3 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 46.020951573049366 0.09315764076686055 1 T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 3 39.793 0 0 3.2708 0 0 389.23517921248646 0 389.23517921248646 0 39.7931914553854 0 0 0 2.079689690656103 0 0 0 + T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2708 + + 25 + NaN NaN 98235.2 NaN 20414 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24878 97.805 NaN 283100 35 0 27152 0.261 + 29050 TYFPTWEGLF 10 56 630.800479457326 1259.586405981452 2 630.8003540039062 MULTI HCD FTMS 0 0 0 24874 112931.09375 0.4113317512742731 -8 0.1674957275390625 4 Unmodified _TYFPTWEGLF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 79.59630418116434 0.006214567534389808 1 [YT]{M(Oxidation (M))|F}PTWE 7 3 71.177 0 0 5.6508 0 0 0 332.1612642877563 332.1612642877563 33.21796966806488 0 0 0 0 2.75 1.6989700043360187 0.2742275032520141 0 + [YT]{M(Oxidation (M))|F}PTWE 5.6508 + + 552 + NaN NaN 129381 NaN 20415 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24879 97.808 NaN 308810 35 0 36064 0.261 + 6464 FPILFVEPNL 10 50 594.8367099450535 1187.6588669569069 2 595.338623046875 MULTI HCD FTMS 0 0 0 24874 79600.5625 0.3468119585015847 -8 0.1674957275390625 5 Unmodified _FPILFVEPNL_ ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant 51.629811660486645 0.07186226796122157 1 {I|L}{M(Oxidation (M))|F}VE[NP]{I|L} 7 3 40.706 0 0 3.4274 0 0 357.20518691230626 0 357.20518691230626 0 36.10161358642024 0 0 0 1.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}VE[NP]{I|L} 3.4274 + + 107 NaN NaN 138914.2 NaN 20416 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24880 97.812 NaN 81054 35 0 9494.4 0.261 + 18039 MLRFMALF 8 41 514.7749355374708 1027.5353181417415 2 514.7749633789062 MULTI HCD FTMS 0 0 0 24874 25777.3203125 0.4534369819251018 -22 0.4958648681640625 6 Unmodified _MLRFMALF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 19.438996006549623 0.45076845602799126 1 PE 2 -1 20.969 0 0 2.0407 0 0 783.4064865922954 0 783.4064865922954 0 -4.247425010840047 -4.247425010840047 0 0 0 0 0 0 PE 2.0407 - 7 NaN NaN 99004.8 NaN 20417 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24881 97.815 NaN 104690 35 0 20039 0.261 + 19954 NYGDYFNVFF 10 32 643.2798451462858 1284.5451373593714 2 643.2796630859375 MULTI HCD FTMS 0 0 0 24874 33741.75390625 0.07252487018737819 -8 0.1674957275390625 7 Unmodified _NYGDYFNVFF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 23.789781309258295 0.28859042913526417 1 {M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 40.19 0 0 3.1287 0 0 612.2172108380875 0 612.2172108380875 0 33.19984993812689 0 0 0 1.4247425010840047 0 0 0.8494850021680094 + {M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1287 + + 15 NaN NaN 103613.2 NaN 20418 4461 24874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24883 97.82 NaN 89457 35 0 13885 0.327 + 17135 LYLPSFFTY 9 38 575.7940788865984 1149.5736048399967 2 575.7942504882812 MULTI HCD FTMS 0 0 0 24882 59849.6796875 0.40304604223798657 10 -0.17966461181640625 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}TY 3 6 33.94 0 0 2.9524 0 0 720.3837550690462 0 720.3837550690462 0 2.998037644757048 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}TY 2.9524 + + 16 NaN NaN 95781.1 NaN 20419 4462 24882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24884 97.824 NaN 128550 35 0 29022 0.261 + 11415 IYPSLIYII 9 48 547.8288726619645 1093.643192390729 2 547.8275756835938 MULTI HCD FTMS 0 0 0 24882 28174.234375 0.6783918042986612 1 -0.0096282958984375 2 Unmodified _IYPSLIYII_ ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;nc|ENSG00000177058|Q8NBW4-4|SLC38A9 4.75600775471527 0.31496297302216103 1 V 1 9 10.485 0 0 0.95868 0 0 686.4018921771418 305.15915857486567 991.5610507520075 0 0 0 0 0 0.5 0 0 0 V 0.95868 - 7 + NaN NaN 106211.3 NaN 20420 4462 24882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24886 97.829 NaN 738400 35 0 107310 0.327 + 32053 VYQIFDTFF 9 50 590.2895528789719 1178.5645528247437 2 590.2899780273438 MULTI HCD FTMS 0 0 0 24885 377772.125 0.38352543803666783 5 -0.107635498046875 1 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 122.17920374332846 0.0010792739174387011 1 [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 101.3 0 0 8.5949 8.5949 94.143 0 0 0 5.427965835756439 5.427965835756439 5.427965835756439 12.703037561203843 0 2.8494850021680094 1.3979400086720375 0.8494850021680094 0.3494850021680094 + + [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][AG]{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][YK]EPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Q[YV];[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}[AG][YV] 8.5949;7.5171;6.3115;3.2491;1.9756;1.1943 +;-;-;-;-;- + 359 NaN NaN 198211.5 NaN 20421 4463 24885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24887 97.834 NaN 238260 35 0 33028 0.261 + 34781 YQSVIYPFL 9 60 565.3008735070971 NaN 0 565.288818359375 PEAK HCD FTMS 0 0 0 24885 5998.2666015625 0.5027339968327772 -2 0.035308837890625 2 Unmodified _YQSVIYPFL_ ENSG00000180772|ENST00000371906|AGTR2 8.593279151180031 0.2536050107310812 1 V{I|L}G 3 7 8.6721 0 0 0.76841 0 0 131.05914276170012 725.3296602838499 856.38880304555 0 0 0 0 0 0 0 0 0 V{I|L}G 0.76841 - 14 + NaN NaN 120542.4 NaN 20422 4463 24885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24888 97.837 NaN 160090 35 0 49256 0.261 + 904 AYAPQGWIAFF 11 38 635.8162964232876 1269.618039913375 2 635.8173217773438 MULTI HCD FTMS 0 0 0 24885 53389.3359375 0.096826373114433 -6 0.11455535888671875 3 Unmodified _AYAPQGWIAFF_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 39.94969957227396 0.1372740116928318 1 {I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 7 43.175 0 0 3.4007 0 0 773.350232583003 0 773.350232583003 0 42.69077524932108 0 0 0 1.4247425010840047 0 0 0 + {I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4007 + + 53 NaN NaN 127248.5 NaN 20423 4463 24885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24889 97.841 NaN 48929 35 0 5531.8 0.264 + 23654 RPVVKVKL 8 29 469.8302380542858 937.6459231753716 2 469.8302001953125 MULTI HCD FTMS 0 0 0 24885 5173.64208984375 0.18256611798371938 1 -0.0227508544921875 4 Unmodified _RPVVKVKL_ ENSG00000081803|ENST00000449022|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;nc|ENSG00000081803|Q86UW7-3|CADPS2 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87795 NaN 20424 4463 24885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24890 97.844 NaN 63451 35 0 7296.8 0.261 + 8057 GHPGFSQWL 9 41 514.7490782045912 NaN 0 514.7493896484375 PEAK HCD FTMS 0 0 0 24885 17467.73046875 0.7037308330545865 1 -0.0227508544921875 5 Unmodified _GHPGFSQWL_ ENST00000326685.11_1_5:148638855-148639278:+|nuORF 10.823927491677226 0.2427956001690155 1 T 1 9 8.8515 0 0 0.86148 0 0 710.3097886339887 213.1028231256469 923.4126117596355 0 0 0 0 0 0.4247425010840047 0 0 0 T 0.86148 - 7 + NaN NaN 105102.8 NaN 20425 4463 24885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24891 97.847 NaN 41006 35 0 7225 0.261 -1 CHWVTLLLVC 10 27 622.320068359375 NaN 0 622.320068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _CHWVTLLLVC(Carbamidomethyl (C))_ ENST00000292246.7_2_3:43618626-43621882:-|nuORF 6.723162845929126 0.3344301934401713 1 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4367260236344 274.08258997135005 1126.5193159949845 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 3 + NaN NaN 89176.7 NaN 20426 4463 24885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24893 97.852 NaN 1220000 35 0 216960 0.327 + 22876 QYPFPLPVF 9 66 554.2971878997938 1106.5798228663875 2 554.2974853515625 MULTI HCD FTMS 0 0 0 24892 677560.25 0.5277852778722525 5 -0.10778045654296875 1 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 93.88341677533236 0.004424206486747196 1 [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F} 9 0 + 75.812 0 0 6.851 6.851 94.918 0 0 0 62.62456261857125 14.973024840566467 14.973024840566467 75.81215024481537 0 2.5 1.3979400086720375 0 0 + + [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F} 6.851 + + 152 + NaN NaN 275876.5 NaN 20427 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24894 97.857 NaN 339080 35 0 39152 0.261 + 29045 TYFFTAVLI 9 55 537.796959244543 1073.579365555886 2 537.7974243164062 MULTI HCD FTMS 0 0 0 24892 153715.90625 0.39713930078130266 12 -0.2126007080078125 2 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 88.90359156742426 0.00455469703666567 1 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 9 0 + 78.408 0 0 7.3034 7.3034 95.811 0 0 0 14.89454989793387 63.685625271001165 14.89454989793387 78.40797194541551 0 2.024227503252014 1 1.2302046884880937 0 + + [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 7.3034 + + 71 NaN NaN 135240.2 NaN 20428 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24895 97.86 NaN 333930 35 0 50099 0.261 + 14628 LFYFPLGSL 9 60 528.794025419935 NaN 0 528.7794189453125 PEAK HCD FTMS 0 0 0 24892 10142.5068359375 0.345000598589879 -2 0.032379150390625 3 Unmodified _LFYFPLGSL_ REV__ENSG00000155465|ENST00000674313|SLC7A7 21.74664581756881 0.17567436591797916 1 AEQ 3 -1 7.5359 0 0 0.71392 0 0 132.1007939045199 592.3148897760374 724.4156836805573 0 0 0 0 0 0 0 0 0 AEQ 0.71392 - 44 + NaN NaN 137255.2 NaN 20429 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24896 97.864 NaN 187550 35 0 25511 0.261 + 15078 LMACRILII 9 47 523.3171450894353 1044.6197372456704 2 523.3168334960938 MULTI HCD FTMS 0 0 0 24892 48486.984375 0.6907808096592807 -2 0.032379150390625 4 Unmodified _LMACRILII_ REV__ENSG00000124102|ENST00000243924|PI3 21.74664581756881 0.17247014374749275 1 {I|L}PD[Q{I|L}]V 6 -1 29.257 0 0 2.8007 0 0 0 376.2213228815063 376.2213228815063 18.683947707303616 0 0 0 0 0.5 0 0.3494850021680094 0.3807196863200844 {I|L}PD[Q{I|L}]V 2.8007 - 35 + NaN NaN 125360.8 NaN 20430 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24897 97.867 NaN 81657 35 0 19090 0.261 + 32765 WRNRQKNKRR 10 37 481.2835464289429 1440.8288098870287 3 481.2836608886719 MULTI HCD FTMS 0 0 0 24892 27517.888671875 0.0615010824836627 47 -0.8578948974609375 5 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 1 {M(Oxidation (M))|F} 1 10 2.4743 0 0 0.17172 0 0 1158.6614037364411 132.0693758600219 1290.730779596463 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.17172 - 1 + NaN NaN 90958.8 NaN 20431 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24898 97.87 NaN 64693 35 0 20934 0.261 + -1 MWPRVDHQKC 10 28 452.88055415763165 NaN 0 452.8702087402344 PEAK HCD FTMS 0 0 0 24892 11497.0302734375 0.35673419419303914 -37 0.8019790649414062 6 Carbamidomethyl (C) _MWPRVDHQKC(Carbamidomethyl (C))_ REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__nc|ENSG00000157106|Q96Q15-3|SMG1;REV__nc|ENSG00000157106|Q96Q15-4|SMG1;REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;REV__SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99456.6 NaN 20432 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24899 97.874 NaN 42845 35 0 6643.2 0.261 + -1 YNITWYICL 9 29 623.303098466637 NaN 0 622.8185424804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YNITWYIC(Carbamidomethyl (C))L_ REV__ENSG00000111331|ENST00000228928|OAS3 2.0597508629832335 0.2852655770354268 1 {I|L} 1 -1 6.9897 0 0 0.56161 0 0 279.072064997924 849.40482728215 1128.476892280074 0 0 0 0 0 0 0 0 0 {I|L} 0.56161 + + 5 + NaN NaN 92034.1 NaN 20433 4464 24892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24901 97.879 NaN 190640 35 0 8920.5 0.327 -1 THLCKKKMRRK 11 59 495.95872205178085 1484.8543367555426 3 496.29351806640625 MULTI HCD FTMS 0 0 0 24900 105858.984375 0.5356656605339377 -12 0.251739501953125 1 Carbamidomethyl (C) _THLC(Carbamidomethyl (C))KKKMRRK_ ENSG00000133107|ENST00000379705|TRPC4;ENST00000426868.6_1_13:38213370-38229407:-|nuORF;nc|ENSG00000133107|Q9UBN4-2|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4;nc|ENSG00000133107|Q9UBN4-6|TRPC4 0.09484139111097674 0.41850472438158626 1 K 1 -1 5.4846 0 0 0.36937 0 0 1070.6089276752675 283.1186922662719 1353.7276199415394 0 0 0 0 0 0.5 0 0 0 K 0.36937 + + 8 + NaN NaN 107572.5 NaN 20434 4465 24900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24902 97.883 NaN 203100 35 0 48374 0.261 + 4479 EYIQFVPLL 9 40 561.3156213182853 1120.6166897033704 2 561.3159790039062 MULTI HCD FTMS 0 0 0 24900 81434.984375 0.3393871619389113 17 -0.2879486083984375 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 27.628801355627647 0.12213550946336599 1 {[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V[{I|L}P]{I|L} 10 4 + 42.101 0 0 3.7569 3.7569 88.985 0 0 0 1.249387366082999 34.02880645020623 1.249387366082999 42.10077508221467 0 2.1989700043360187 0 0.4247425010840047 0 {[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V[{I|L}P]{I|L} 3.7569 - 74 NaN NaN 119799.6 NaN 20435 4465 24900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24903 97.887 NaN 92768 35 0 15926 0.261 + 13487 KYPENFFLL 9 41 585.8130797502249 1169.6116065672497 2 585.8134155273438 MULTI HCD FTMS 0 0 0 24900 44959.32421875 0.619444417534512 18 -0.3009033203125 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 18.1463463914782 0.20357593197100715 1 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4375679059297 0 925.4375679059297 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 7 NaN NaN 107623.6 NaN 20436 4465 24900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24904 97.89 NaN 89827 35 0 27340 0.261 + -1 MAYCGDTTLI 10 37 580.7531784899868 NaN 0 580.7532958984375 PEAK HCD FTMS 0 0 0 24900 34629.0859375 0.48731369349320586 4 -0.08159637451171875 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))AYC(Carbamidomethyl (C))GDTTLI_ REV__ENSG00000138678|ENST00000264409|GPAT3;REV__ENST00000513683.1_1_4:84509414-84516114:+|nuORF 1.844237919475145 0.33860587697544825 1 V 1 -1 2.2185 0 0 0.19133 0 0 499.05529389227974 558.3468111627561 1057.402105055036 0 0 0 0 0 0 0 0 0 V 0.19133 - 1 + NaN NaN 106677.7 NaN 20437 4465 24900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24905 97.893 NaN 144990 35 0 20546 0.261 + 35298 YWCLGPEIL 9 47 547.2728096718761 1092.531066410552 2 547.7752075195312 MULTI HCD FTMS 0 0 0 24900 12883.421875 0.171436442607374 -13 0.27133941650390625 5 Unmodified _YWCLGPEIL_ ENST00000600027.5_1_19:49999677-50000944:+|nuORF 11.640296217721598 0.25978676193971967 1 E{I|L}{I|L} 3 6 33.94 0 0 3.1066 0 0 719.3096162365446 0 719.3096162365446 0 33.85151878060192 0 0 0 0.9247425010840047 0 0 0 + E{I|L}{I|L} 3.1066 + + 13 NaN NaN 119170.3 NaN 20438 4465 24900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24907 97.898 NaN 728090 35 0 130800 0.327 + 20545 PEAVVAVLIL 10 40 512.325932362796 1022.6373117923921 2 512.3261108398438 MULTI HCD FTMS 0 0 0 24906 682775.9375 1 0 0 1 Unmodified _PEAVVAVLIL_ REV__ENSG00000171561|ENST00000641541|OR2AT4 19.256988751693697 0.33098864134661865 1 V{I|L}{I|L}{I|L} 4 -1 46.938 0 0 4.5899 0 0 566.306617903288 0 566.306617903288 0 19.49092531119419 0 0 0 1.5 0 0 0 V{I|L}{I|L}{I|L} 4.5899 + + 32 NaN NaN 206539 NaN 20439 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24908 97.903 NaN 561480 35 0 76630 0.261 + 33790 YLGLPAFLL 9 67 503.80185495505066 1005.5891569769013 2 503.78399658203125 MULTI HCD FTMS 0 0 0 24906 49262.390625 0.22242632041228821 18 -0.3043060302734375 2 Unmodified _YLGLPAFLL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5 9.347437153973935 0.2795965555214564 1 V{I|L}{I|L} 3 7 20.846 0 0 2.073 0 0 662.3326283185562 0 662.3326283185562 0 1.8052345079578878 0 0 0 0.3054621874040891 0 0 0 V{I|L}{I|L} 2.073 - 51 NaN NaN 172574.8 NaN 20440 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24909 97.906 NaN 339330 35 0 36352 0.261 + 29046 TYFFTAVLI 9 50 537.796959244543 1073.579365555886 2 537.7972412109375 MULTI HCD FTMS 0 0 0 24906 119027.34375 0.30751818223581373 14 -0.23256683349609375 3 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 74.92900055777586 0.007493270374442853 1 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 9 0 + 69.676 0 0 6.4901 6.4901 94.138 0 0 0 3.65279269351241 62.68623129393987 3.65279269351241 69.67593133730006 0 2.353917193908117 0 0.805462187404089 0 + + [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 6.4901 + + 108 NaN NaN 133769.1 NaN 20441 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24910 97.909 NaN 76557 35 0 7055.9 0.261 + 2229 DKRENPLLPE 10 37 605.8272529351118 1209.6399529370235 2 605.8281860351562 MULTI HCD FTMS 0 0 0 24906 21447.458984375 0.7367990466318267 -2 0.045745849609375 4 Unmodified _DKRENPLLPE_ EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10825358-10825926:-|nuORF;nc|ENSG00000110321|P78344-2|EIF4G2 4.189502756095605 0.45312800054222196 1 YYW{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}PE 9 5 + 34.895 0 0 2.8847 2.8847 88.063 0 0 0 2.956349637772753 27.931825014007224 2.956349637772753 34.89454989793388 0 0 0 0 0 YYW{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}PE 2.8847 - 39 NaN NaN 96501.7 NaN 20442 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24911 97.913 NaN 30125 35 0 6238 0.261 + 31442 VYCCLGLFHF 10 26 601.2805687759978 1200.5465846187956 2 601.7821044921875 MULTI HCD FTMS 0 0 0 24906 16897.294921875 0.21815595322089254 7 -0.12404632568359375 5 Unmodified _VYCCLGLFHF_ REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF 4.3292370932331545 0.45238836448149167 1 [YV]Q 3 -1 28.952 0 0 2.4116 0 0 0 807.3296602838499 807.3296602838499 28.95242492728684 0 0 0 0 0 2 0 0 [YV]Q 2.4116 - 3 + NaN NaN 84867.5 NaN 20443 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24912 97.916 NaN 34158 35 0 5506 0.261 -1 GWRAGRDAPH 10 26 582.7852119113822 NaN 0 582.784423828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GWRAGRDAPH_ SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|49|1|anti-sense 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86803.8 NaN 20444 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24913 97.919 NaN 62921 35 0 21098 0.261 + 15769 LPFVTMVLY 9 30 541.8018798828125 NaN 0 541.8018798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LPFVTMVLY_ tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1 4.75600775471527 0.27219989241163056 1 M 1 8 11.99 0 0 1.1085 0 0 557.3280298810563 390.20371423892817 947.5317441199845 0 0 0 0 0 0.5 0 0 0 + M 1.1085 + + 1 + NaN NaN 84945.9 NaN 20445 4466 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24915 97.924 NaN 371140 35 0 85806 0.327 + 31362 VYADIPFLL 9 33 525.7972202605431 1049.579887587886 2 525.79736328125 MULTI HCD FTMS 0 0 0 24914 132648.453125 0.6809031921719603 7 -0.11067962646484375 1 Unmodified _VYADIPFLL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 15.847184025352803 0.2234401846867398 1 P{M(Oxidation (M))|F}{I|L}{I|L} 4 5 36.938 0 0 3.5193 0 0 561.2793698818941 0 561.2793698818941 0 29.948500216800937 0 0 0 0.5 0 0 0 + P{M(Oxidation (M))|F}{I|L}{I|L} 3.5193 + + 28 NaN NaN 150248.3 NaN 20446 4467 24914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24916 97.929 NaN 504850 35 0 148520 0.261 + 993 AYFNFPELL 9 62 557.2841215605249 1112.5536901878497 2 557.7763061523438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 52.268347100219714 0.028397529699942435 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PQ{I|L}{I|L} 9 2 + 46.798 0 0 4.2064 4.2064 86.75 0 0 0 8.339789456906331 5.595625103894761 5.595625103894761 12.703037561203843 0 0 1.3979400086720375 0.3494850021680094 0.3494850021680094 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PQ{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}P[AG]{I|L}{I|L};[YN]{I|L}[WY]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[PG];[TA]{[MS]|[{M(Oxidation (M))|F}A]}[WY]E{I|L}{I|L} 4.2064;3.0646;1.4424;0.75164;0.60992 -;-;-;-;- 182 NaN NaN 164136 NaN 20447 4467 24914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24917 97.932 NaN 45662 35 0 5344.7 0.261 + 2230 DKRENPLLPE 10 34 605.8272529351118 1209.6399529370235 2 605.8286743164062 MULTI HCD FTMS 0 0 0 24914 18547.5234375 0.6371756018317756 -1 0.0262451171875 3 Unmodified _DKRENPLLPE_ EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10825358-10825926:-|nuORF;nc|ENSG00000110321|P78344-2|EIF4G2 4.189502756095605 0.45312800054222196 1 {I|L}{I|L}PE 4 6 31.938 0 0 2.6403 0 0 739.3524037091812 0 739.3524037091812 0 31.938200260161125 0 0 0 0 0 0 0 + {I|L}{I|L}PE 2.6403 + + 8 NaN NaN 89368.9 NaN 20448 4467 24914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24919 97.937 NaN 515770 35 0 74268 0.327 + 6465 FPILFVEPNL 10 49 594.8367099450535 1187.6588669569069 2 594.8369750976562 MULTI HCD FTMS 0 0 0 24918 120245.15625 0.3170389511388526 -1 0.0128936767578125 1 Unmodified _FPILFVEPNL_ ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant 76.82478488871298 0.009498572185128612 1 {I|L}{M(Oxidation (M))|F}VEPN{I|L} 7 3 69.997 0 0 5.8937 0 0 357.20482070136876 0 357.20482070136876 0 66.89851049298127 0 0 0 2.6989700043360187 0 0 0.3807196863200844 + {I|L}{M(Oxidation (M))|F}VEPN{I|L} 5.8937 + + 255 NaN NaN 161936.6 NaN 20449 4468 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24920 97.942 NaN 404580 35 0 73489 0.261 + 19955 NYGDYFNVFF 10 47 643.2798451462858 1284.5451373593714 2 643.280029296875 MULTI HCD FTMS 0 0 0 24918 131517.796875 0.28268569476830196 -1 0.0128936767578125 2 Unmodified _NYGDYFNVFF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 57.24910588100465 0.05142613675551719 1 Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 73.448 0 0 5.7179 0 0 449.1539478986344 0 449.1539478986344 0 64.86494082808356 0 0 0 2.3807196863200843 0 0 0.8494850021680094 + Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.7179 + + 99 NaN NaN 140698.3 NaN 20450 4468 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24921 97.945 NaN 383970 35 0 34570 0.261 + 29051 TYFPTWEGLF 10 63 630.800479457326 1259.586405981452 2 630.80078125 MULTI HCD FTMS 0 0 0 24918 88578.703125 0.32263242896299477 -1 0.0128936767578125 3 Unmodified _TYFPTWEGLF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 114.6490535036381 4.5448240269034285E-05 1 [YT]{M(Oxidation (M))|F}PTWEG{I|L}{M(Oxidation (M))|F} 10 0 + 89.875 0 0 7.1353 7.1353 93.063 0 0 0 12.469165662315689 12.469165662315689 12.469165662315689 19.987737688117235 0 2.778659694992122 1.6989700043360187 0.872363747448347 0 + + [YT]{M(Oxidation (M))|F}PTWEG{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PT{[DA]|[EG]}W{I|L}{M(Oxidation (M))|F};[YT]KK[C(Carbamidomethyl (C))D]EG{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PTWEVA{M(Oxidation (M))|F};[YT]{[TV]|[{I|L}S]}{[QG]|[NA]}Q{M(Oxidation (M))|F}G{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[KA]{[QG]|[NA]}EG{I|L}{M(Oxidation (M))|F};[YT]KKE[C(Carbamidomethyl (C))D]G{I|L}{M(Oxidation (M))|F};[YT]Q{[MS]|[{M(Oxidation (M))|F}A]}[KG]EG{I|L}{M(Oxidation (M))|F};[YT]QE{[MS]|[{M(Oxidation (M))|F}A]}[KG]G{I|L}{M(Oxidation (M))|F};[YT]KKQCDD{I|L}{M(Oxidation (M))|F} 7.1353;5.5484;5.0249;4.6341;4.2583;4.0168;3.7677;3.1565;3.1348;2.8533 +;-;-;-;-;-;-;-;-;- + 1394 NaN NaN 140608.7 NaN 20451 4468 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24922 97.949 NaN 396340 35 0 127810 0.262 + 31363 VYADIPFLL 9 47 525.7972202605431 1049.579887587886 2 525.7973022460938 MULTI HCD FTMS 0 0 0 24918 70267.359375 0.3606922521655438 8 -0.127716064453125 4 Unmodified _VYADIPFLL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 16.942295170755138 0.21397866736869717 1 E{[MG]|[TS]}{I|L}{I|L} 5 7 27.218 0 0 2.5933 0 0 488.2996247864136 0 488.2996247864136 0 22.614393726401687 0 0 0 0.5 0 0 0 E{[MG]|[TS]}{I|L}{I|L} 2.5933 - 26 NaN NaN 160279.4 NaN 20452 4468 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24923 97.952 NaN 55035 35 0 6280.9 0.261 + 6651 FPLTVHSLD 9 34 514.7749355374708 1027.5353181417415 2 514.7747802734375 MULTI HCD FTMS 0 0 0 24918 17010.998046875 0.2992326401813145 -15 0.3104400634765625 5 Unmodified _FPLTVHSLD_ REV__ENSG00000185532|ENST00000373980|PRKG1 11.640296217721598 0.25978676193971967 1 {I|L}PE 3 -1 29.693 0 0 2.8897 0 0 670.3277455060562 0 670.3277455060562 0 10.228787452803374 0 0 0 0.5 0 0 0 {I|L}PE 2.8897 - 11 NaN NaN 98107.8 NaN 20453 4468 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24924 97.955 NaN 106600 35 0 15438 0.261 + 30189 VHLSDDLVVF 10 43 572.306668252807 1142.5987835724138 2 572.3257446289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VHLSDDLVVF_ REV__ENSG00000162066|ENST00000293971|AMDHD2;REV__ENST00000563145.1_1_16:2578906-2579561:+|nuORF;REV__nc|ENSG00000162066|Q9Y303-2|AMDHD2;REV__nc|ENSG00000162066|Q9Y303-3|AMDHD2 7.289230182591677 0.43672065049472153 1 M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QYP 6 -1 20.495 0 0 1.7937 0 0 0 360.1904696100219 360.1904696100219 6.999868935529747 0 0 0 0 0.3494850021680094 0 0 0 M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QYP 1.7937 - 55 + NaN NaN 100510.9 NaN 20454 4468 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24926 97.96 NaN 317510 35 0 37977 0.327 + 14911 LLATPYVSSH 10 70 544.294854372901 NaN 0 544.31298828125 PEAK HCD FTMS 0 0 0 24925 17196.49609375 1 0 0 1 Unmodified _LLATPYVSSH_ L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense 10.823927491677226 0.33092050725491123 1 {I|L}{I|L}Y{I|L} 4 7 18.928 0 0 1.742 0 0 382.18500573196724 199.05121790103752 581.2362236330048 0 0 0 0 0 0 0 0 0 {I|L}{I|L}Y{I|L} 1.742 - 131 + NaN NaN 137906.1 NaN 20455 4469 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24927 97.965 NaN 144140 35 0 15064 0.261 + 17136 LYLPSFFTY 9 47 575.7940788865984 1149.5736048399967 2 575.7944946289062 MULTI HCD FTMS 0 0 0 24925 124645.0546875 0.8393979088717954 17 -0.29754638671875 2 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}TY 3 6 33.94 0 0 2.9524 0 0 720.3855553939367 0 720.3855553939367 0 4.758950235313861 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}TY 2.9524 + + 46 NaN NaN 107484 NaN 20456 4469 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24928 97.968 NaN 49741 35 0 6504 0.261 + 24228 RYFLPPYTF 9 31 602.313509784459 1202.612466635718 2 602.3140258789062 MULTI HCD FTMS 0 0 0 24925 23718.5859375 1 0 0 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.27331982688540024 1 T 1 8 5.4846 0 0 0.45605 0 0 165.0790933201029 933.4619845025999 1098.5410778227028 0 0 0 0 0 0 0 0 0 + T 0.45605 + + 1 + NaN NaN 88000.9 NaN 20457 4469 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24930 97.973 NaN 721910 35 0 86179 0.327 + 11146 IYIPTAILW 9 65 545.3208012582164 1088.6270495832327 2 545.3208618164062 MULTI HCD FTMS 0 0 0 24929 247332.6875 0.41120700655342096 1 -0.0195465087890625 1 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 89.42679046578446 0.004540987215715461 1 [Y{I|L}]{I|L}[TP]A{I|L}{I|L}W 9 0 + 74.179 0 0 6.814 6.814 92.134 0 0 0 19.621892823592972 62.523656471886326 19.621892823592972 17.258177263343413 0 2.6549471895720984 1.3979400086720375 0.3807196863200844 0 + + [Y{I|L}]{I|L}[TP]A{I|L}{I|L}W;[Y{I|L}]{I|L}[TP]A{I|L}W{I|L};{I|L}{I|L}Y[TP]A{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}W;{I|L}{I|L}Y[TP]A{I|L}W{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}W{I|L} 6.814;5.2287;4.6271;3.6441;3.0418;2.9774 +;-;-;-;-;- + 314 NaN NaN 196912.3 NaN 20458 4470 24929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24931 97.978 NaN 686530 35 0 98358 0.261 + 905 AYAPQGWIAFF 11 59 635.8162964232876 1269.618039913375 2 635.8165283203125 MULTI HCD FTMS 0 0 0 24929 295299.71875 0.535552657589648 1 -0.0195465087890625 2 Unmodified _AYAPQGWIAFF_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 88.95385435242217 0.007759427153300959 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}APQGW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 0 + 93.043 0 0 7.3284 7.3284 93.199 0 0 0 18.239087409443187 16.575773191777927 16.575773191777927 18.239087409443187 0 3.048455006504028 1.5228787452803376 0.3252574989159953 0.28872548999643577 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}APQGW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}SPQGW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{M(Oxidation (M))|F}GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{I|L}WG{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}W{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.3284;5.8919;5.4453;4.9617;4.1227;3.5351 +;-;-;-;-;- + 477 NaN NaN 191923 NaN 20459 4470 24929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24932 97.981 NaN 188830 35 0 25361 0.261 + 32054 VYQIFDTFF 9 36 590.2895528789719 1178.5645528247437 2 590.2899169921875 MULTI HCD FTMS 0 0 0 24929 65070.90625 0.06606190920776432 12 -0.19342041015625 3 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 45.69961567697781 0.039180348357221985 1 TD{M(Oxidation (M))|F}{I|L}[QP]{M(Oxidation (M))|F} 7 7 54.953 0 0 4.6627 0 0 312.1470204084 0 312.1470204084 0 47.963432323661976 0 0 0 1.8494850021680094 0 0.7742275032520141 0 TD{M(Oxidation (M))|F}{I|L}[QP]{M(Oxidation (M))|F} 4.6627 - 84 NaN NaN 109698.6 NaN 20460 4470 24929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24933 97.984 NaN 131450 35 0 11008 0.261 + 13749 KYPSPFFVF 9 51 566.297343879057 1130.580134824914 2 566.2979736328125 MULTI HCD FTMS 0 0 0 24929 21952.560546875 0.4625736597530155 -4 0.0749664306640625 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 1 V{M(Oxidation (M))|F} 2 7 28.711 0 0 2.5395 0 0 866.4331144165141 0 866.4331144165141 0 2.0681749859927834 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.5395 + + 127 + NaN NaN 106882.9 NaN 20461 4470 24929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24934 97.988 NaN 89740 35 0 11303 0.261 + -1 LTKDHDLFL 9 40 572.306668252807 1142.5987835724138 2 572.3263549804688 MULTI HCD FTMS 0 0 0 24929 12034.6025390625 0.33467450999051007 16 -0.28461456298828125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LTKDHDLFL_ REV__ENSG00000139687|ENST00000267163|RB1;REV__ITM2B-RB1|1|fusion;REV__ITM2B-RB1|4|fusion;REV__RB1|p.A333V|1|0.62|ENSG00000139687|chr13:48367552-48367552|C/T|missense_variant;REV__RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;REV__RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 2.0597508629832335 0.3354026079994024 1 Q 1 -1 6.9897 0 0 0.61174 0 0 391.20377732417006 620.3090304010374 1011.5128077252075 0 0 0 0 0 0 0 0 0 Q 0.61174 - 22 + NaN NaN 112145.9 NaN 20462 4470 24929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24936 97.993 NaN 392700 35 0 68513 0.327 + 22877 QYPFPLPVF 9 55 554.2971878997938 1106.5798228663875 2 554.2974853515625 MULTI HCD FTMS 0 0 0 24935 140059.6875 0.10909943593339241 12 -0.18682861328125 1 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 89.42679046578446 0.004540987215715461 1 G{[DS]|[MA]|[CV]|TT}P{I|L}PV{M(Oxidation (M))|F} 8 4 57.09 0 0 5.1591 0 0 276.14720351386876 0 276.14720351386876 0 52.48564426840403 0 0 0 2.0994850021680094 0 0.8494850021680094 0 G{[DS]|[MA]|[CV]|TT}P{I|L}PV{M(Oxidation (M))|F} 5.1591 - 445 NaN NaN 148081.6 NaN 20463 4471 24935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24938 97.999 NaN 149180 35 0 19067 0.327 + 11077 IYGYLQELIF 10 43 629.8393912357774 1257.6642295383547 2 629.8397216796875 MULTI HCD FTMS 0 0 0 24937 68351.8359375 0.2861584198597401 -6 0.10153961181640625 1 Unmodified _IYGYLQELIF_ ENSG00000124786|ENST00000644923|SLC35B3;nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3 8.155526934196011 0.43213520406898465 1 K{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F} 5 6 25.445 0 0 2.0232 0 0 609.2775135724625 0 609.2775135724625 0 11.633031284438358 0 0 0 0.9247425010840047 0 0 0 K{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F} 2.0232 - 26 NaN NaN 109553.5 NaN 20464 4472 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24939 98.004 NaN 334630 35 0 19586 0.263 -1 LLFIRKHELKM 11 74 495.95872205178085 1484.8543367555426 3 495.9589538574219 MULTI HCD FTMS 0 0 0 24937 207955.3125 0.8863397888257231 -3 0.0395050048828125 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LLFIRKHELKM(Oxidation (M))_ ENST00000320248.3_1_8:1954634-1955009:+|nuORF 0.40826533853263924 0.41713015341995335 1 P 1 -1 9.732 0 0 0.65542 0 0 546.3254054377081 838.4545992486936 1384.7800046864018 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.65542 - 30 + NaN NaN 143009.4 NaN 20465 4472 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24940 98.007 NaN 218280 35 0 67206 0.261 + -1 SCSWVSPCNQ 10 33 584.2318537664512 1166.4491545997023 2 584.2320556640625 MULTI HCD FTMS 0 0 0 24937 34554.28515625 0.09801168256130488 -11 0.20534515380859375 3 Carbamidomethyl (C) _SCSWVSPC(Carbamidomethyl (C))NQ_ REV__LRRC4|p.C50W|1|0.12|ENSG00000128594|chr7:128030491-128030491|G/C|missense_variant 2.735195868890462 0.4608258780945842 1 G 1 -1 6.9897 0 0 0.59923 0 0 100.05230199690989 1006.3520277870532 1106.404329783963 0 0 0 0 0 0 0 0 0 G 0.59923 - 3 + NaN NaN 131281.1 NaN 20466 4472 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24941 98.011 NaN 147770 35 0 15777 0.261 -1 IFHSMCSC 8 44 529.198654664637 NaN 0 529.1986694335938 PEAK HCD FTMS 0 0 0 24937 6520.94775390625 0.14644456711301065 6 -0.097320556640625 4 2 Carbamidomethyl (C),Oxidation (M) _IFHSM(Oxidation (M))C(Carbamidomethyl (C))SC(Carbamidomethyl (C))_ ENST00000316660.6_1_18:57570589-57570676:+|nuORF 0.7936320650641473 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.66166 0 0 486.1150084486115 420.1774496471349 906.2924580957464 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.66166 + + 16 + NaN NaN 102427.1 NaN 20467 4472 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24942 98.014 NaN 49277 35 0 10620 0.261 + 30098 VFVNVGNLLEF 11 25 625.8432669041176 NaN 0 625.8439331054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VFVNVGNLLEF_ ENSG00000237172|ENST00000449549|B3GNT9 6.1918466704503565 0.3245556576228567 1 E 1 10 6.9897 0 0 0.55932 0 0 165.08282179476015 952.5258272760374 1117.6086490707976 0 0 0 0 0 0 0 0 0 + E 0.55932 + + 3 + NaN NaN 108459.4 NaN 20468 4472 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24943 98.017 NaN 67354 35 0 17240 0.264 -1 PCCQKGRG 8 34 453.2095991595399 NaN 0 453.2095031738281 PEAK HCD FTMS 0 0 0 24937 30881.56640625 0.5532375077415088 -88 1.8262176513671875 6 Carbamidomethyl (C) _PC(Carbamidomethyl (C))CQKGRG_ ENST00000265087.8_1_5:172755210-172755570:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93651.5 NaN 20469 4472 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24945 98.022 NaN 289680 35 0 36423 0.326 + 6466 FPILFVEPNL 10 52 594.8367099450535 1187.6588669569069 2 594.8370971679688 MULTI HCD FTMS 0 0 0 24944 107744.5 0.2840796613874424 4 -0.05861663818359375 1 Unmodified _FPILFVEPNL_ ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant 63.960520009940105 0.027018206803399523 1 EV{M(Oxidation (M))|F}K[NP]{I|L} 7 6 43.945 0 0 3.7001 0 0 342.18995476213837 0 342.18995476213837 0 42.35100095250324 0 0 0 1.3252574989159953 0 0.3252574989159953 0.3494850021680094 EV{M(Oxidation (M))|F}K[NP]{I|L} 3.7001 - 75 NaN NaN 123304.8 NaN 20470 4473 24944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24946 98.027 NaN 265500 35 0 55678 0.261 + 4480 EYIQFVPLL 9 58 561.3156213182853 1120.6166897033704 2 561.3157958984375 MULTI HCD FTMS 0 0 0 24944 114029.1171875 0.4752259579550654 25 -0.463714599609375 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 34.40172386719151 0.0910440009062557 1 {[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V[{I|L}P]{I|L} 10 4 + 45.468 0 0 4.0574 4.0574 89.456 0 0 0 0.470289513353066 20.959471728614574 0.470289513353066 45.46774379777631 0 2.2302046884880937 0 0.7302046884880937 0 {[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V[{I|L}P]{I|L} 4.0574 - 129 NaN NaN 125751.8 NaN 20471 4473 24944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24947 98.03 NaN 100960 35 0 12132 0.261 + 13488 KYPENFFLL 9 37 585.8130797502249 1169.6116065672497 2 585.8134155273438 MULTI HCD FTMS 0 0 0 24944 35416.31640625 0.48796194935550713 26 -0.47988128662109375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4336197603664 0 925.4336197603664 0 8.010299956639813 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 9 NaN NaN 106591.2 NaN 20472 4473 24944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24949 98.035 NaN 281900 35 0 43758 0.327 + 20546 PEAVVAVLIL 10 34 512.325932362796 1022.6373117923921 2 512.3261108398438 MULTI HCD FTMS 0 0 0 24948 133976.1875 0.19622277256951517 8 -0.13146209716796875 1 Unmodified _PEAVVAVLIL_ REV__ENSG00000171561|ENST00000641541|OR2AT4 19.256988751693697 0.33098864134661865 1 V{I|L}{I|L}{I|L} 4 -1 46.938 0 0 4.5899 0 0 566.3060780255875 0 566.3060780255875 0 20.996075289514096 0 0 0 1.5 0 0 0 V{I|L}{I|L}{I|L} 4.5899 + + 25 NaN NaN 121723.3 NaN 20473 4474 24948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24950 98.04 NaN 508790 35 0 77713 0.261 + 31019 VSLWELLF 8 51 503.78411535740463 1005.5536777816093 2 503.7841491699219 MULTI HCD FTMS 0 0 0 24948 251941.953125 0.838982996169489 5 -0.0696258544921875 2 Unmodified _VSLWELLF_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 19.438996006549623 0.45076845602799126 1 {I|L}{I|L}{M(Oxidation (M))|F} 3 5 38.5 0 0 3.8287 0 0 614.3051169875885 0 614.3051169875885 0 7.04628427264403 0 0 0 1.2302046884880937 0 0 0 + {I|L}{I|L}{M(Oxidation (M))|F} 3.8287 + + 55 NaN NaN 159103.6 NaN 20474 4474 24948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24951 98.043 NaN 182340 35 0 43995 0.261 + 6839 FPSWAMELL 9 34 547.2728096718761 1092.531066410552 2 547.272705078125 MULTI HCD FTMS 0 0 0 24948 92118.8671875 0.5320466651150614 3 -0.04573822021484375 3 Unmodified _FPSWAMELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 19.256988751693697 0.19398022840297344 1 ME{I|L}{I|L} 4 5 46.938 0 0 4.2963 0 0 588.2690907209 0 588.2690907209 0 28.979400086720375 0 0 0 1.5 0 0 0 + ME{I|L}{I|L} 4.2963 + + 17 NaN NaN 112985 NaN 20475 4474 24948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24952 98.046 NaN 102560 35 0 20348 0.261 + 33527 YIFSLAQLF 9 34 551.3029192541773 NaN 0 551.3024291992188 PEAK HCD FTMS 0 0 0 24948 41445.36328125 0.7080930397075532 5 -0.0696258544921875 4 Unmodified _YIFSLAQLF_ ENSG00000163933|ENST00000296292|RFT1 10.823927491677226 0.2427956001690155 1 {M(Oxidation (M))|F}E 2 8 14.464 0 0 1.3142 0 0 130.1113794245669 691.346141601282 821.457521025849 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}E 1.3142 - 17 + NaN NaN 90022.6 NaN 20476 4474 24948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24953 98.05 NaN 111730 35 0 6982.9 0.261 + 2786 DYGIVADLF 9 40 506.7529379050011 1011.4913228768022 2 506.7536926269531 MULTI HCD FTMS 0 0 0 24948 32398.9375 0.1707774516295879 -9 0.15648651123046875 5 Unmodified _DYGIVADLF_ ENSG00000140374|ENST00000557943|ETFA;ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA 29.081581746732265 0.1154664336125038 1 VAD{I|L}{M(Oxidation (M))|F} 5 4 34.891 0 0 3.4494 0 0 448.19661147285314 0 448.19661147285314 0 27.900990676322905 0 0 0 1.5682503180159344 0 0 0 + VAD{I|L}{M(Oxidation (M))|F} 3.4494 + + 63 NaN NaN 97167.2 NaN 20477 4474 24948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24954 98.053 NaN 34524 35 0 4663.3 0.261 + -1 PHFYHLMLT 9 33 587.789306640625 NaN 0 587.789306640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _PHFYHLM(Oxidation (M))LT_ REV__ENSG00000152402|ENST00000526355|GUCY1A2;REV__nc|ENSG00000152402|P33402-2|GUCY1A2;REV__nc|ENSG00000152402|P33402-3|GUCY1A2 2.0597508629832335 0.2852655770354268 1 N 1 -1 3.4949 0 0 0.29805 0 0 555.5355100568376 499.94916711978755 1055.4846771766252 0 0 0 0 0 0 0 0 0 N 0.29805 - 1 + NaN NaN 90644.2 NaN 20478 4474 24948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24956 98.058 NaN 399440 35 0 54024 0.327 + 28960 TYAPLFSLPSF 11 54 621.8240276167346 1241.6335023002691 2 621.8245239257812 MULTI HCD FTMS 0 0 0 24955 76558.34375 0.05545808237000056 -8 0.13355255126953125 1 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 93.16586880292088 0.012141012152160733 1 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}SP{M(Oxidation (M))|F} 11 2 + 86.247 0 0 6.9462 6.9462 93.123 0 0 0 4.133031284438374 4.133031284438374 4.133031284438374 23.92281585743654 0 3.048455006504028 2 0.7302046884880937 0 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}SP{M(Oxidation (M))|F};[YT]VVS{M(Oxidation (M))|F}[VP]SP{M(Oxidation (M))|F};[YT]A[{I|L}T]{M(Oxidation (M))|F}[VP]SP{M(Oxidation (M))|F};[YV]S[VP]{M(Oxidation (M))|F}S{I|L}[PS]{M(Oxidation (M))|F};[YV]S{I|L}S{M(Oxidation (M))|F}[VP][PS]{M(Oxidation (M))|F};[YT]A[{I|L}P]{M(Oxidation (M))|F}S[VP]T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YV]S{M(Oxidation (M))|F}[VP]SP{M(Oxidation (M))|F};[WY]{I|L}{[ET]|[MV]}[{I|L}T]A[{M(Oxidation (M))|F}V];[WY]{I|L}S{[ET]|[MV]}VV[{M(Oxidation (M))|F}V];[WY]{I|L}{[ET]|[MV]}SVV[{M(Oxidation (M))|F}V] 6.9462;5.0195;4.9784;4.7186;4.6832;4.4899;3.4087;3.1467;2.6798;2.6444 -;-;-;-;-;-;-;-;-;- 592 NaN NaN 139193.3 NaN 20479 4475 24955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24958 98.065 NaN 4829800 35 0 1441800 0.327 + 966 AYFDFPELL 9 78 557.776200349485 1113.5378477657698 2 557.776611328125 MULTI HCD FTMS 0 0 0 24957 2225902 0.4300982728939111 -7 0.10482025146484375 1 Unmodified _AYFDFPELL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 196.9406470795105 2.1074595295112906E-17 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 109.86 0 0 9.866 9.866 97.331 0 0 0 19.634155135475737 64.44583042182266 19.634155135475737 25.994850021680094 0 2.774227503252014 1.5228787452803376 1.829689690656103 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DEP{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}P[RK]A;{[{M(Oxidation (M))|F}D]|MM}AY{M(Oxidation (M))|F}PE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}Y{M(Oxidation (M))|F}APE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}A{M(Oxidation (M))|F}YPE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}AYPE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}YAPE{I|L}{I|L} 9.866;7.5316;6.7699;6.7675;6.6118;6.4996;5.5059;5.3998;5.2876;5.2356 +;-;-;-;-;-;-;-;-;- + 1240 NaN NaN 824119.2 NaN 20480 4476 24957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24959 98.069 NaN 247950 35 0 41543 0.261 + 19956 NYGDYFNVFF 10 50 643.2798451462858 1284.5451373593714 2 643.280029296875 MULTI HCD FTMS 0 0 0 24957 103589.640625 0.22265663071218356 7 -0.1144866943359375 2 Unmodified _NYGDYFNVFF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 45.739877483867886 0.09559676962230333 1 {M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 61.938 0 0 4.8218 0 0 612.2197567903518 0 612.2197567903518 0 53.777587793350534 0 0 0 1.8494850021680094 0 0 0.8494850021680094 + {M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8218 + + 90 NaN NaN 131529 NaN 20481 4476 24957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24960 98.073 NaN 171670 35 0 39638 0.262 -1 0 45 547.2514347662478 546.2441582996478 1 547.2512817382812 MULTI HCD FTMS 0 0 0 24957 47351.48046875 0.6804678991154351 7 -0.1144866943359375 3 NaN NaN 1 E{I|L}{I|L} 3 -1 14.705 0 0 2.692 0 0 173.0238041510134 0 173.0238041510134 0 9.018637558036673 0 0 0 0 0 0.4247425010840047 0 E{I|L}{I|L} 2.692 - 4 + NaN NaN 120957.9 NaN 20482 4476 24957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24961 98.076 NaN 87696 35 0 16259 0.262 + -1 FQDENKCIFGV 11 42 452.88055415763165 NaN 0 452.88055419921875 PEAK HCD FTMS 0 0 0 24957 17155.46484375 0.532306237479565 -25 0.48064422607421875 4 Carbamidomethyl (C) _FQDENKC(Carbamidomethyl (C))IFGV_ REV__ENSG00000198788|ENST00000675028|MUC2;REV__nc|ENSG00000198788|Q02817|MUC2 0.5059551277355931 0.3406848944787997 1 {I|L} 1 -1 5.4846 0 0 0.60687 0 0 469.49482916311644 318.1451815240844 787.6400106872009 0 0 0 0 0 0 0 0 0 {I|L} 0.60687 + + 1 + NaN NaN 96712.8 NaN 20483 4476 24957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24963 98.081 NaN 167810 35 0 23405 0.327 + 15047 LLSDESSEADS 11 64 576.7498223554927 1151.4850917777853 2 576.7490844726562 MULTI HCD FTMS 0 0 0 24962 26196.171875 0.17691324634179362 -6 0.0881500244140625 1 Unmodified _LLSDESSEADS_ ENSG00000128908|ENST00000648947|INO80;INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant 13.042465956692817 0.3434429782671734 1 D{M(Oxidation (M))|F}C{I|L} 4 10 25.438 0 0 2.2092 0 0 655.2878285138687 0 655.2878285138687 0 11.25692234783578 0 0 0 0.7302046884880937 0 0 0 D{M(Oxidation (M))|F}C{I|L} 2.2092 - 36 NaN NaN 112348.3 NaN 20484 4477 24962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24964 98.085 NaN 115560 35 0 17224 0.261 -1 LSDNPIHESM 10 39 579.7584060690368 1157.5022592048736 2 579.7576293945312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _LSDNPIHESM(Oxidation (M))_ ENSG00000175643|ENST00000312499|RMI2;nc|ENSG00000175643|Q96E14-2|RMI2 2.735195868890462 0.4608258780945842 1 W 1 -1 0.48455 0 0 0.041862 0 0 533.2454365503798 435.1657808893188 968.4112174396987 0 0 0 0 0 0 0 0 0 W 0.041862 - 3 + NaN NaN 96202.1 NaN 20485 4477 24962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24965 98.089 NaN 57967 35 0 4637.7 0.261 + 26601 SVVSLFYGAI 10 37 528.2923905521094 NaN 0 528.2918701171875 PEAK HCD FTMS 0 0 0 24962 16937.595703125 0.057684993238015986 27 -0.5086669921875 3 Unmodified _SVVSLFYGAI_ ENSG00000188269|ENST00000322301|OR7A5 3.2813086475875832 0.33737594360511275 1 A 1 9 6.9897 0 0 0.6628 0 0 131.0983786610562 849.4128512018186 980.5112298628749 0 0 0 0 0 0 0 0 0 + A 0.6628 + + 3 + NaN NaN 96538.4 NaN 20486 4477 24962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24966 98.092 NaN 107990 35 0 23473 0.261 + 2061 DEIKQSPDE 9 47 530.7422478009586 NaN 0 530.801513671875 PEAK HCD FTMS 0 0 0 24962 12595.1259765625 0.9486716296818811 -1 0.01580810546875 4 Unmodified _DEIKQSPDE_ ENSG00000183775|ENST00000512467|KCTD16 2.9952420565917617 0.2807323172627736 1 {I|L}{I|L} 2 8 7.9588 0 0 0.75121 0 0 130.9770434918442 699.3059786432249 830.2830221350691 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.75121 - 3 + NaN NaN 103010 NaN 20487 4477 24962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24968 98.097 NaN 95973 35 0 7807.6 0.411 + 14830 LIYLYLID 8 55 513.2996486468879 1024.5847443605758 2 513.2999877929688 MULTI HCD FTMS 0 0 0 24967 27276.8125 0.6649438543345604 1 -0.0076904296875 1 Unmodified _LIYLYLID_ REV__ENST00000371926.7_1_10:90682987-90683107:+|nuORF 6.354104778181461 0.5325651638111438 1 {I|L}{I|L}N 3 -1 26.198 0 0 2.5569 0 0 666.3779501467209 0 666.3779501467209 0 20.511525224473814 0 0 0 0 0 0 0 {I|L}{I|L}N 2.5569 - 20 NaN NaN 117104.9 NaN 20488 4478 24967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24970 98.105 NaN 688630 35 0 133230 0.327 -1 0 53 568.7674362785214 1135.5203196238426 2 568.7675170898438 MULTI HCD FTMS 0 0 0 24969 382157.28125 0.5389149862471064 1 -0.0260162353515625 1 NaN NaN 1 AY{M(Oxidation (M))|F}D{M(Oxidation (M))|F}P 6 -1 76.419 0 0 6.7299 0 0 0 392.17756067447505 392.17756067447505 38.71645960868548 0 0 0 0 2.1549471895720984 2 0 0 AY{M(Oxidation (M))|F}D{M(Oxidation (M))|F}P 6.7299 - 127 + NaN NaN 186576.2 NaN 20489 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24971 98.109 NaN 428610 35 0 85767 0.261 + 906 AYAPQGWIAFF 11 48 635.8162964232876 1269.618039913375 2 635.8164672851562 MULTI HCD FTMS 0 0 0 24969 210371.5 0.3815276776524889 10 -0.2150421142578125 2 Unmodified _AYAPQGWIAFF_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 71.92227651296345 0.013463123628000074 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 0 + 85.424 0 0 6.7283 6.7283 92.1 0 0 0 18.239087409443187 16.575773191777927 16.575773191777927 18.239087409443187 0 2.5994850021680094 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}S[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{M(Oxidation (M))|F}GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{I|L}WG{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}W{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7283;5.2917;4.9808;4.794;3.6582;3.3673 +;-;-;-;-;- + 405 NaN NaN 151338.5 NaN 20490 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24972 98.112 NaN 415740 35 0 52394 0.262 + 11147 IYIPTAILW 9 55 545.3208012582164 1088.6270495832327 2 545.321044921875 MULTI HCD FTMS 0 0 0 24969 136823.078125 0.22747744728729438 10 -0.2150421142578125 3 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 70.71552829651908 0.008856681705782516 1 [Y{I|L}]{I|L}[TP]A{I|L}{I|L}W 9 0 + 61.309 0 0 5.6318 5.6318 90.555 0 0 0 54.31926257837823 16.478174818886373 16.478174818886373 21.638115730523133 0 1.9247425010840047 1.3979400086720375 0 0 + + [Y{I|L}]{I|L}[TP]A{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}W;[{I|L}A][RK][R{M(Oxidation (M))|F}]{I|L}W 5.6318;3.6441;1.0917 +;-;- + 167 + NaN NaN 151222 NaN 20491 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24973 98.116 NaN 317840 35 0 43404 0.261 + 32923 YAFYDEMIT 9 79 576.7498223554927 1151.4850917777853 2 576.7496337890625 MULTI HCD FTMS 0 0 0 24969 75368.515625 0.5089937886651977 -4 0.0467529296875 4 Unmodified _YAFYDEMIT_ REV__ENSG00000127616|ENST00000344626|SMARCA4;REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF;REV__ENST00000591595.5_1_19:11130023-11172489:+|nuORF;REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF;REV__nc|ENSG00000127616|P51532-2|SMARCA4;REV__nc|ENSG00000127616|P51532-3|SMARCA4;REV__nc|ENSG00000127616|P51532-4|SMARCA4;REV__nc|ENSG00000127616|P51532-5|SMARCA4 18.13498045792455 0.20367413111508956 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DPE{M(Oxidation (M))|F} 7 -1 50.428 0 0 4.3794 0 0 0 279.09760461978755 279.09760461978755 30.963855682194023 0 0 0 0 0.6109243748081782 1.6989700043360187 0.5629529932484498 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DPE{M(Oxidation (M))|F} 4.3794 - 104 + NaN NaN 142770.5 NaN 20492 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24974 98.119 NaN 81643 35 0 11917 0.261 + 32055 VYQIFDTFF 9 36 590.2895528789719 1178.5645528247437 2 590.2900390625 MULTI HCD FTMS 0 0 0 24969 53093.7734375 0.05390236962199576 21 -0.420196533203125 5 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 24.990960013464015 0.14443998892849796 1 {I|L}{M(Oxidation (M))|F}D[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 6 3 42.396 0 0 3.5972 0 0 390.1893788068375 0 390.1893788068375 0 42.39577516576787 0 0 0 1.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}D[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 3.5972 + + 24 NaN NaN 113066 NaN 20493 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24975 98.122 NaN 107370 35 0 31533 0.261 + -1 CAWEEHSF 8 34 533.2086196823656 1064.402686431531 2 533.2083129882812 MULTI HCD FTMS 0 0 0 24969 22032.810546875 0.33751413315126416 -3 0.03969573974609375 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))AWEEHSF_ REV__ENSG00000089335|ENST00000505242|ZNF302;REV__ENST00000509196.1_1_19:35173669-35176139:+|nuORF;REV__ENST00000512455.6_1_19:35169682-35173855:+|nuORF;REV__nc|ENSG00000089335|Q9NR11|ZNF302 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 19.732 0 0 1.8538 0 0 899.3240253981311 0 899.3240253981311 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.8538 + + 4 + NaN NaN 96897.8 NaN 20494 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24976 98.126 NaN 151950 35 0 49989 0.261 + 25497 SFFQLPMD 8 44 492.7309202124876 NaN 0 492.730712890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SFFQLPMD_ REV__ENST00000356884.10_1_9:95475590-95475719:-|nuORF 8.593279151180031 0.38822285293237185 1 A 1 -1 5.4846 0 0 0.55769 0 0 164.07046972009397 745.3235931800383 909.3940629001322 0 0 0 0 0 0 0 0 0 A 0.55769 - 13 + NaN NaN 105436.2 NaN 20495 4479 24969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24978 98.131 NaN 242230 35 0 32972 0.327 + 29047 TYFFTAVLI 9 41 537.796959244543 1073.579365555886 2 537.7970581054688 MULTI HCD FTMS 0 0 0 24977 57671.39453125 0.14899939673109314 28 -0.5342330932617188 1 Unmodified _TYFFTAVLI_ ENSG00000012174|ENST00000379484|MBTPS2 50.855029805455786 0.030374663808198754 1 V{I|L}{I|L} 3 6 35.445 0 0 3.3016 0 0 730.3322617391452 0 730.3322617391452 0 25.981362441963327 0 0 0 0.9247425010840047 0 0 0 + V{I|L}{I|L} 3.3016 + + 22 NaN NaN 110878 NaN 20496 4480 24977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24979 98.135 NaN 202790 35 0 43804 0.261 -1 0 33 553.3117141841217 552.3044377175216 1 554.2988891601562 MULTI HCD FTMS 0 0 0 24977 6265.83642578125 0.6828540869023831 2 -0.03582000732421875 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 2.8036 0 0 387.2258377192779 0 387.2258377192779 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.8036 - 6 + NaN NaN 122841.1 NaN 20497 4480 24977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24980 98.139 NaN 137870 35 0 15761 0.261 -1 SICCCLFIL 9 49 564.7661641004162 NaN 0 564.7660522460938 PEAK HCD FTMS 0 0 0 24977 21288.646484375 0.47240109526383944 -3 0.04990386962890625 3 2 Carbamidomethyl (C) _SIC(Carbamidomethyl (C))C(Carbamidomethyl (C))CLFIL_ ENSG00000113719|ENST00000393784|ERGIC1 4.3292370932331545 0.2742679634796037 1 {I|L} 1 -1 6.9897 0 0 0.61992 0 0 131.0949084990262 880.3171480768186 1011.4120565758449 0 0 0 0 0 0 0 0 0 {I|L} 0.61992 + + 1 + NaN NaN 103076 NaN 20498 4480 24977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24981 98.142 NaN 82159 35 0 9365.5 0.261 -1 MIMLTGGGPH 10 34 515.2471691269102 NaN 0 515.2762451171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _MIM(Oxidation (M))LTGGGPH_ ZNF563|p.H387L|1|0.08|ENSG00000188868|chr19:12318865-12318865|T/A|missense_variant 1.844237919475145 0.33860587697544825 1 P 1 -1 6.9897 0 0 0.67961 0 0 148.01598454657136 780.3933140741782 928.4092986207495 0 0 0 0 0 0 0 0 0 P 0.67961 + + 3 + NaN NaN 94629.3 NaN 20499 4480 24977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24983 98.147 NaN 388210 35 0 130150 0.327 + 25859 SMFMMKMMM 9 41 584.2318537664512 1166.4491545997023 2 584.2322387695312 MULTI HCD FTMS 0 0 0 24982 94731.828125 0.2687025885401713 -2 0.04228973388671875 1 Unmodified _SMFMMKMMM_ REV__ENST00000505125.5_1_4:54249946-54250012:+|nuORF 1.844237919475145 0.33703635659052655 1 G{I|L} 2 -1 9.464 0 0 0.81135 0 0 100.05190583910696 893.2728975885374 993.3248034276444 0 0 0 0 0 0 0 0 0 G{I|L} 0.81135 - 7 + NaN NaN 141637.7 NaN 20500 4481 24982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24984 98.151 NaN 137230 35 0 17852 0.261 + 34999 YSVSLFFFFT 10 49 629.315729188206 1256.6169054432119 2 629.8396606445312 MULTI HCD FTMS 0 0 0 24982 6067.96337890625 0.5714318493160764 -2 0.04228973388671875 2 Unmodified _YSVSLFFFFT_ REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}S 2 -1 9.464 0 0 0.75313 0 0 164.0270296390607 889.4500216119749 1053.4770512510356 0 0 0 0 0 0 0 0 0 {I|L}S 0.75313 - 58 + NaN NaN 115683.2 NaN 20501 4481 24982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24985 98.155 NaN 112580 35 0 11329 0.261 -1 MVHKQYYCA 9 42 579.7584060690368 1157.5022592048736 2 579.7596435546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))VHKQYYCA_ ENSG00000169946|ENST00000407775|ZFPM2;nc|ENSG00000169946|Q8WW38-2|ZFPM2 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 -1 6.9061 0 0 0.59664 0 0 518.1775044214736 489.23407922916255 1007.4115836506362 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 0.59664 + + 3 + NaN NaN 102010.4 NaN 20502 4481 24982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24986 98.158 NaN 227980 35 0 35398 0.261 + 13750 KYPSPFFVF 9 62 566.297343879057 1130.580134824914 2 566.2972412109375 MULTI HCD FTMS 0 0 0 24982 23472.427734375 0.4945995605931104 7 -0.15979766845703125 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 20.41453444215458 0.18397929046831515 1 N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6 4 27.44 0 0 2.4271 0 0 361.19932753730626 0 361.19932753730626 0 9.4812969097282 0 0 0 0.805462187404089 0 0 0 N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.4271 - 121 NaN NaN 114805.3 NaN 20503 4481 24982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24987 98.162 NaN 90030 35 0 13882 0.261 + 16255 LQEAQEIF 8 33 489.2505947141313 976.4866364950626 2 489.2503967285156 MULTI HCD FTMS 0 0 0 24982 5202.5 0.10326015660834299 -6 0.08904266357421875 5 Unmodified _LQEAQEIF_ ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H 15.847184025352803 0.47719562709667024 1 {M(Oxidation (M))|F} 1 7 21.99 0 0 2.2519 0 0 811.4077770974048 0 811.4077770974048 0 21.989700043360187 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.2519 + + 5 + NaN NaN 107668.5 NaN 20504 4481 24982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24989 98.167 NaN 284410 35 0 14813 0.327 + -1 VRKYKEKKLMF 11 76 495.95872205178085 1484.8543367555426 3 495.958984375 MULTI HCD FTMS 0 0 0 24988 205691.484375 0.8766909805402879 7 -0.15320587158203125 1 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 1.1097533296519684 0.4140536653900533 1 K 1 -1 6.1092 0 0 0.41144 0 0 938.5292157612051 415.19748865299067 1353.7267044141959 0 0 0 0 0 0.5 0 0 0 K 0.41144 + + 25 + NaN NaN 135588.3 NaN 20505 4482 24988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24990 98.171 NaN 131320 35 0 18193 0.261 + 13489 KYPENFFLL 9 33 585.8130797502249 1169.6116065672497 2 585.813232421875 MULTI HCD FTMS 0 0 0 24988 48220.17578125 0.6643720567261376 35 -0.6472549438476562 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.445 0 0 2.603 0 0 778.36528212715 0 778.36528212715 0 23.455612550363796 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.603 + + 12 NaN NaN 98597.2 NaN 20506 4482 24988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24991 98.175 NaN 126210 35 0 30309 0.261 + 4481 EYIQFVPLL 9 40 561.3156213182853 1120.6166897033704 2 561.3153076171875 MULTI HCD FTMS 0 0 0 24988 38725.92578125 0.16139356009246306 34 -0.63104248046875 3 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 19.256988751693697 0.19398022840297344 1 {M(Oxidation (M))|F}V 2 7 19.693 0 0 1.7573 0 0 533.2436390607437 338.20844371806146 871.4520827788051 0 0 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}V 1.7573 + + 17 NaN NaN 103516.5 NaN 20507 4482 24988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24993 98.179 NaN 1370800 35 0 205480 0.327 + 28961 TYAPLFSLPSF 11 56 621.8240276167346 1241.6335023002691 2 621.823974609375 MULTI HCD FTMS 0 0 0 24992 1380472.25 1 0 0 1 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 179.17365725063826 7.024681009739805E-14 1 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F} 11 0 + 110.21 0 0 8.8765 8.8765 94.886 0 0 0 11.704328361272957 11.704328361272957 11.704328361272957 14.075221787320515 0 3.110924374808178 1.6989700043360187 1.916386562212267 0 + + [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}SP{M(Oxidation (M))|F};[YT]VVS{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]A[VP]{M(Oxidation (M))|F}T{I|L}PS{M(Oxidation (M))|F};[YT]A[{I|L}T]{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YV]S[VP]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YV]S{I|L}S{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]VVS{M(Oxidation (M))|F}[VP]SP{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F}T{I|L}PS{M(Oxidation (M))|F} 8.8765;7.7429;7.5769;7.5092;6.9169;6.864;6.521;6.521;5.9281;5.7833 +;-;-;-;-;-;-;-;-;- + 1497 NaN NaN 295076.1 NaN 20508 4483 24992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24994 98.184 NaN 110350 35 0 5746.9 0.263 + 23914 RTLFRGRRRRE 11 52 501.6343262374809 1501.8811493126427 3 501.968994140625 MULTI HCD FTMS 0 0 0 24992 23242.287109375 0.25241950482547665 1 -0.0229644775390625 2 Unmodified _RTLFRGRRRRE_ ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4 0.09484139111097674 0.41850472438158626 1 A 1 11 8.0989 0 0 0.53925 0 0 105.077789348467 1322.752038207565 1427.829827556032 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.53925 - 5 + NaN NaN 102719.9 NaN 20509 4483 24992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24995 98.188 NaN 373460 35 0 72232 0.261 + 2830 DYLEWPEYF 9 60 631.2739989726772 1260.5334450121543 2 631.2743530273438 MULTI HCD FTMS 0 0 0 24992 148587.390625 0.04624016010069136 -12 0.18682861328125 3 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 47.748688679222035 0.03472022231463587 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[EP]Y{M(Oxidation (M))|F} 9 0 + 60.098 0 0 4.7676 4.7676 84.539 0 0 0 7.147642715192504 31.681212380090216 7.147642715192504 8.010299956639813 0 2.274227503252014 0 0.3252574989159953 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[EP]Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWY[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EGN{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWE[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WN{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EGGG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}W[EP]Y{M(Oxidation (M))|F} 4.7676;4.1322;3.7952;3.7569;3.5372;3.4775;3.4017;3.4017;3.0298;2.9847 +;-;-;-;-;-;-;-;-;- + 1211 NaN NaN 141472.5 NaN 20510 4483 24992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24996 98.191 NaN 254140 35 0 24621 0.263 + 2787 DYGIVADLF 9 50 506.7529379050011 1011.4913228768022 2 506.7530212402344 MULTI HCD FTMS 0 0 0 24992 189714.375 1 0 0 4 Unmodified _DYGIVADLF_ ENSG00000140374|ENST00000557943|ETFA;ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA 74.92900055777586 0.007493270374442853 1 {NN|[MP]|[D{I|L}]|[EV]}[YG]VAD{I|L}{M(Oxidation (M))|F} 9 2 + 75.908 0 0 7.5046 7.5046 90.043 0 0 0 9.203103093438969 12.91833743429045 9.203103093438969 9.203103093438969 0 2.305462187404089 1.3979400086720375 0 0 {NN|[MP]|[D{I|L}]|[EV]}[YG]VAD{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[VA]|[{I|L}G]}VAD{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]W{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[VA]|[{I|L}G]}VW{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[HV]V[WP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[TP]VAD{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[VP]TAD{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YT][PG]D{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}T][PG]D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[MN]{I|L}{M(Oxidation (M))|F} 7.5046;6.5947;5.6138;5.4599;5.1352;5.1339;4.3205;4.1704;3.777;3.4277 -;+;-;-;-;-;-;-;-;- + 237 NaN NaN 126864.5 NaN 20511 4483 24992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24997 98.194 NaN 82123 35 0 7142.6 0.261 + 4375 EWPPFVVTL 9 37 544.2954130043393 NaN 0 544.3126831054688 PEAK HCD FTMS 0 0 0 24992 34830.57421875 1 0 0 5 Unmodified _EWPPFVVTL_ ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552809-16553013:-|nuORF 6.723162845929126 0.26266733336404485 1 V 1 8 10.485 0 0 0.96492 0 0 232.1428757139534 752.3406455175284 984.4835212314817 0 0 0 0 0 0.5 0 0 0 + V 0.96492 + + 2 + NaN NaN 101030.9 NaN 20512 4483 24992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 24998 98.198 NaN 114330 35 0 17260 0.261 + 29968 VFIELPLSI 9 46 515.8130022530686 NaN 0 515.8135375976562 PEAK HCD FTMS 0 0 0 24992 94327.4921875 1 0 0 6 Unmodified _VFIELPLSI_ ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;nc|ENSG00000135424|Q13683|ITGA7 24.020572477871973 0.16041128140741606 1 S[{I|L}P]{I|L} 4 6 15.177 0 0 1.4741 0 0 131.09608399656832 485.2399996393188 616.3360836358871 0 0 0 0 0 1.3494850021680094 0 0 0 S[{I|L}P]{I|L} 1.4741 - 11 + NaN NaN 94977.5 NaN 20513 4483 24992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25000 98.202 NaN 2880100 35 0 830550 0.327 + 967 AYFDFPELL 9 75 557.776200349485 1113.5378477657698 2 557.7770385742188 MULTI HCD FTMS 0 0 0 24999 2424698.25 0.468510531736747 1 -0.03572845458984375 1 Unmodified _AYFDFPELL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 147.8311659463005 1.1118996804784084E-05 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 100.33 0 0 9.0103 9.0103 96.822 0 0 0 20.87128018967597 60.1011543433267 20.87128018967597 28.979400086720375 0 2.6237125054200234 1.5228787452803376 1.5044321917401078 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[DA]|[EG]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}PE{I|L}{I|L};{[DA]|[EG]}{M(Oxidation (M))|F}YE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}RRDA{M(Oxidation (M))|F};[HV]D{I|L}[{M(Oxidation (M))|F}E]E{I|L}{I|L};[EP]{I|L}{I|L}[Y{M(Oxidation (M))|F}]DA{M(Oxidation (M))|F};[EP]{I|L}[{M(Oxidation (M))|F}E][YV]A{M(Oxidation (M))|F} 9.0103;6.4078;6.0228;3.4204;3.1162;2.7743;2.142;0.80907 +;-;-;-;-;-;-;- + 616 NaN NaN 513757.8 NaN 20514 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25001 98.21 NaN 400470 35 0 79091 0.271 + 33791 YLGLPAFLL 9 55 503.80185495505066 1005.5891569769013 2 503.7843017578125 MULTI HCD FTMS 0 0 0 24999 20650.38671875 0.09323927390993011 34 -0.6308441162109375 2 Unmodified _YLGLPAFLL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5 9.347437153973935 0.2795965555214564 1 {I|L}{I|L} 2 7 19.068 0 0 1.8962 0 0 761.4136219709 0 761.4136219709 0 0.4845500650402812 0 0 0 0.2614393726401688 0 0 0 + {I|L}{I|L} 1.8962 + + 62 NaN NaN 160247.8 NaN 20515 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25002 98.213 NaN 289920 35 0 22935 0.261 + 7967 GEEKQFLEVW 10 58 632.8146304999511 1263.6147080667022 2 632.8150024414062 MULTI HCD FTMS 0 0 0 24999 121337.890625 0.6413741133499722 1 -0.03572845458984375 3 Unmodified _GEEKQFLEVW_ APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant;ENSG00000164062|ENST00000296456|APEH;ENST00000447541.5_1_3:49713127-49713830:+|nuORF;ENST00000463616.1_1_3:49711921-49713416:+|nuORF;ENST00000463995.5_1_3:49713127-49713790:+|nuORF 8.155526934196011 0.43213520406898465 1 [YT]A 3 10 38.512 0 0 3.0478 0 0 0 925.4434941395697 925.4434941395697 31.52249673628745 0 0 0 0 0.805462187404089 2 0 0 [YT]A 3.0478 - 184 + NaN NaN 137149.7 NaN 20516 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25003 98.217 NaN 200960 35 0 36449 0.261 + 10124 IFLLTNNNLLL 11 63 644.3857570513443 1286.7569611694885 2 644.3873291015625 MULTI HCD FTMS 0 0 0 24999 52839.796875 0.5552438802235229 1 -0.03572845458984375 4 Unmodified _IFLLTNNNLLL_ ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B 17.44264345198275 0.3051040874848456 1 T{I|L}E{I|L}{I|L} 5 8 51.013 0 0 3.9645 0 0 699.3881703107437 0 699.3881703107437 0 40.04432191740108 0 0 0 1.305462187404089 0 0 0 T{I|L}E{I|L}{I|L} 3.9645 - 38 NaN NaN 121739.2 NaN 20517 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25004 98.22 NaN 112830 35 0 8168.2 0.263 + 27427 SYVASFFLL 9 48 523.7813116694042 1045.5480704056083 2 523.7815551757812 MULTI HCD FTMS 0 0 0 24999 39437.50390625 0.4652459983364324 1 -0.03572845458984375 5 Unmodified _SYVASFFLL_ CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant;ENSG00000134256|ENST00000682167|CD101 52.268347100219714 0.028397529699942435 1 {[{M(Oxidation (M))|F}C]|[YS]}VAS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 45.186 0 0 4.3218 4.3218 88.377 0 0 0 38.19653125057968 6.879617791072832 6.879617791072832 21.49674684468792 0 2.0114393726401687 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VAS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.3218;2.2657 +;- + 58 + NaN NaN 97589.4 NaN 20518 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25005 98.223 NaN 136570 35 0 10332 0.261 + 18530 MTEVILNYL 9 51 548.2900991011601 NaN 0 548.30859375 PEAK HCD FTMS 0 0 0 24999 12570.7578125 0.3864605264611605 6 -0.14014434814453125 6 Unmodified _MTEVILNYL_ ENST00000339875.9_1_4:164449783-164449840:-|nuORF 11.640296217721598 0.23883959125015683 1 {I|L}{I|L}N 3 6 18.812 0 0 1.7187 0 0 460.19853208728256 291.1341646783813 751.3326967656639 0 0 0 0 0 0 0 0 0.2614393726401688 + {I|L}{I|L}N 1.7187 + + 26 + NaN NaN 110769.6 NaN 20519 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25006 98.227 NaN 62447 35 0 6388.2 0.261 -1 0 28 512.325932362796 1022.6373117923921 2 512.3258666992188 MULTI HCD FTMS 0 0 0 24999 23767.3125 0.03480982734544596 18 -0.3547515869140625 7 NaN NaN 1 {I|L}{I|L}{I|L} 3 -1 36.198 0 0 3.5397 0 0 665.3739022208371 0 665.3739022208371 0 36.197887582883936 0 0 0 1 0 0 0 {I|L}{I|L}{I|L} 3.5397 - 8 NaN NaN 103604.1 NaN 20520 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25007 98.23 NaN 106780 35 0 16167 0.261 -1 0 47 525.7268489429465 2098.878289905386 4 525.7262573242188 MULTI HCD FTMS 0 0 0 24999 13657.662109375 0.3609974248553036 1 -0.03572845458984375 8 NaN NaN 1 C 1 -1 5.4846 0 0 0.26131 0 0 1537.5989452782358 455.25046716861567 1992.8494124468514 0 0 0 0 0 0 0 0 0 C 0.26131 - 1 + NaN NaN 98550.1 NaN 20521 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25008 98.233 NaN 67750 35 0 8777.6 0.261 + 24024 RWHSKQIF 8 38 551.3029192541773 NaN 0 551.30322265625 PEAK HCD FTMS 0 0 0 24999 4431.986328125 0.07572038034093204 13 -0.25733184814453125 9 Unmodified _RWHSKQIF_ REV__ENSG00000181472|ENST00000325144|ZBTB2 4.75600775471527 0.38822285293237185 1 Q 1 -1 10.485 0 0 0.95263 0 0 694.3703210749576 275.1402987115844 969.5106197865421 0 0 0 0 0 0.5 0 0 0 Q 0.95263 + + 1 + NaN NaN 89641.6 NaN 20522 4484 24999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25010 98.238 NaN 90729 35 0 13766 0.327 + 17137 LYLPSFFTY 9 33 575.7940788865984 1149.5736048399967 2 575.7944946289062 MULTI HCD FTMS 0 0 0 25009 46817.328125 0.315282202134817 33 -0.5951156616210938 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}TY 3 6 29.693 0 0 2.5829 0 0 720.3846189894027 0 720.3846189894027 0 0.5115252244738144 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}TY 2.5829 + + 10 NaN NaN 106378.5 NaN 20523 4485 25009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25011 98.243 NaN 131190 35 0 18193 0.261 -1 0 46 508.6271827280418 3045.719437568651 6 508.7945251464844 MULTI HCD FTMS 0 0 0 25009 42486.12109375 0.7182005444391435 -3 0.07164764404296875 2 NaN NaN 1 {I|L} 1 -1 1.9897 0 0 0.065328 0 0 2555.5700367891573 374.0445650690063 2929.6146018581635 0 0 0 0 0 0 0 0 0 {I|L} 0.065328 - 8 + NaN NaN 106338 NaN 20524 4485 25009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25012 98.246 NaN 57134 35 0 6040.6 0.261 + -1 LMLRHLLN 8 41 513.2996486468879 1024.5847443605758 2 513.2992553710938 MULTI HCD FTMS 0 0 0 25009 7051.53857421875 0.17189974959610277 8 -0.159820556640625 3 Oxidation (M) _LM(Oxidation (M))LRHLLN_ REV__ENSG00000183317|ENST00000373048|EPHA10;REV__ENST00000432874.7_2_1:38184128-38186086:-|nuORF;REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF;REV__nc|ENSG00000183317|Q5JZY3-3|EPHA10 2.302733041254933 0.5385759549224092 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5113 0 0 859.5057018574493 0 859.5057018574493 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5113 + + 1 + NaN NaN 106509.5 NaN 20525 4485 25009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25013 98.249 NaN 48257 35 0 5412.8 0.261 + 12185 KKMGQHCNLN 10 34 586.7858906515638 NaN 0 586.785400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _KKMGQHCNLN_ REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF 3.2813086475875832 0.33737594360511275 1 {I|L} 1 -1 6.9897 0 0 0.59662 0 0 132.04116344445725 923.4099825494749 1055.4511459939322 0 0 0 0 0 0 0 0 0 {I|L} 0.59662 + + 3 + NaN NaN 106527.7 NaN 20526 4485 25009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25014 98.253 NaN 69930 35 0 19490 0.261 + 24041 RWRMHKKKHKR 11 25 530.9852266774942 NaN 0 530.7421875 PEAK HCD FTMS 0 0 0 25009 4867.3779296875 0.203158709004633 4 -0.0815582275390625 5 Unmodified _RWRMHKKKHKR_ REV__ENSG00000205857|ENST00000382119|NANOGNB 0.09484139111097674 0.34185110575506755 1 C 1 -1 3.9794 0 0 0.37543 0 0 495.23569886104457 458.6875399225219 953.9232387835665 0 0 0 0 0 0 0 0 0 C 0.37543 - 1 + NaN NaN 99113.7 NaN 20527 4485 25009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25016 98.258 NaN 207970 35 0 37958 0.327 + 32687 WPLEEVVLL 9 50 549.3157316629076 1096.6169103926152 2 549.3160400390625 MULTI HCD FTMS 0 0 0 25015 42170.37109375 0.10911292154909488 -5 0.11074066162109375 1 Unmodified _WPLEEVVLL_ nc|ENSG00000089159|P49023-3|PXN 11.640296217721598 0.25978676193971967 1 V{I|L}{I|L} 3 6 35.445 0 0 3.2322 0 0 753.3685169904312 0 753.3685169904312 0 12.424843744914611 0 0 0 0.9247425010840047 0 0 0 + V{I|L}{I|L} 3.2322 + + 80 NaN NaN 121308.3 NaN 20528 4486 25015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25017 98.262 NaN 100180 35 0 8531.1 0.261 + 11148 IYIPTAILW 9 47 545.3208012582164 1088.6270495832327 2 545.3211059570312 MULTI HCD FTMS 0 0 0 25015 13059.0048828125 0.021711462244260925 17 -0.322235107421875 2 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 44.40701690623563 0.04511410083598184 1 {I|L}{I|L}W 3 6 38.94 0 0 3.577 0 0 658.3698607178015 0 658.3698607178015 0 6.4928876664371415 0 0 0 1.4247425010840047 0 0 0 + {I|L}{I|L}W 3.577 + + 41 + NaN NaN 97517.8 NaN 20529 4486 25015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25018 98.266 NaN 167210 35 0 43206 0.261 + 11585 IYTDIIYIF 9 37 580.8154443762356 1159.6163358192712 2 580.8160400390625 MULTI HCD FTMS 0 0 0 25015 31776.158203125 0.1642900671467549 -5 0.11074066162109375 3 Unmodified _IYTDIIYIF_ ENSG00000135926|ENST00000258412|TMBIM1 36.04419817259434 0.08350412372117409 1 {I|L}Y{I|L}{M(Oxidation (M))|F} 4 5 45.745 0 0 3.9449 0 0 605.3042698257888 0 605.3042698257888 0 45.74539712336197 0 0 0 1.3807196863200843 0 0 0 + {I|L}Y{I|L}{M(Oxidation (M))|F} 3.9449 + + 14 NaN NaN 103968.1 NaN 20530 4486 25015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25019 98.269 NaN 41768 35 0 6654.3 0.261 + 32056 VYQIFDTFF 9 31 590.2895528789719 1178.5645528247437 2 590.2899169921875 MULTI HCD FTMS 0 0 0 25015 22950.8359375 0.02330036766539454 28 -0.5075607299804688 4 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 12.240655878213236 0.2545997876781172 1 D[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 4 5 26.198 0 0 2.2229 0 0 650.3414173810562 0 650.3414173810562 0 19.20818753952375 0 0 0 1 0 0 0 + D[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 2.2229 + + 5 NaN NaN 94136.3 NaN 20531 4486 25015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25020 98.272 NaN 215710 35 0 38485 0.261 + -1 QAWEMGWDSF 10 59 636.7530939287917 1271.4916349243833 2 637.2559204101562 MULTI HCD FTMS 0 0 0 25015 82607.3828125 0.2628641728622964 -7 0.1530303955078125 5 Oxidation (M) _QAWEM(Oxidation (M))GWDSF_ REV__nc|ENSG00000293328|Q8N9T2|NKAPP1 8.745405648335112 0.42901288225909884 1 Q{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[EC]E{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 10 -1 + 16.898 0 0 1.329 1.329 85.301 0 0 0 6.720449851406514 3.454387282529794 3.454387282529794 12.972287753157516 0 0 0 0.3252574989159953 0 Q{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[EC]E{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[EC]{[QD]|[EN]|[WG]|[KD]|[RS]}EE 1.329;0.30873 -;- 41 + NaN NaN 130927.7 NaN 20532 4486 25015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25021 98.276 NaN 96079 35 0 7388.5 0.262 + 14629 LFYFPLGSL 9 47 528.7939453125 NaN 0 528.7939453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LFYFPLGSL_ REV__ENSG00000155465|ENST00000674313|SLC7A7 3.944395688203298 0.27613285122220627 1 A 1 -1 6.9897 0 0 0.6628 0 0 131.09319994396657 849.4202974908811 980.5134974348477 0 0 0 0 0 0 0 0 0 A 0.6628 - 9 + NaN NaN 92720.8 NaN 20533 4486 25015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25023 98.281 NaN 255500 35 0 20691 0.327 + 2820 DYLEGREDYD 10 65 637.7623406917724 1273.5101284503446 2 638.2631225585938 MULTI HCD FTMS 0 0 0 25022 119098.390625 0.38461061433474997 -6 0.13360595703125 1 Unmodified _DYLEGREDYD_ REV__ENSG00000005020|ENST00000345317|SKAP2 13.042465956692817 0.38911719078024076 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[C(Carbamidomethyl (C))G]|[NC]}[HA]Y{M(Oxidation (M))|F} 10 -1 + 55.71 0 0 4.3745 4.3745 81.108 0 0 0 25.764837301042718 38.006981269092606 25.764837301042718 1.554556341805764 0 0.805462187404089 2 0.6307196863200843 0.8494850021680094 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[C(Carbamidomethyl (C))G]|[NC]}[HA]Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[CP]|[EA]}E[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[CP]|[EA]}Y[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[EC]M[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[EC]M{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[EP][YC(Carbamidomethyl (C))];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[WC(Carbamidomethyl (C))][HA]Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[CP]|[EA]}E[TP]{[CA]|SS} 4.3745;4.2525;4.2404;4.1922;3.9069;3.4911;3.1576;3.0193;2.9512;2.8247 -;-;-;-;-;-;-;-;-;- 536 NaN NaN 143635.7 NaN 20534 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25024 98.285 NaN 153150 35 0 8729.7 0.261 -1 0 56 582.3534213832811 1162.692289833362 2 582.3535766601562 MULTI HCD FTMS 0 0 0 25022 146221.3125 0.412345435960633 -9 0.18358612060546875 2 NaN NaN 1 A 1 -1 3.3412 0 0 0.28737 0 0 528.3192562413684 560.3138521783811 1088.6331084197495 0 0 0 0 0 0.3252574989159953 0 0 0 A 0.28737 - 5 + NaN NaN 113624.1 NaN 20535 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25025 98.289 NaN 159360 35 0 8626.5 0.261 + 34 AALPLLRDRR 10 63 590.866799230865 1179.71904552853 2 590.8671264648438 MULTI HCD FTMS 0 0 0 25022 134299.578125 0.5847053678273758 -10 0.1997833251953125 3 Unmodified _AALPLLRDRR_ ENST00000495794.5_1_5:864585-881375:-|nuORF 1.4819007175156935 0.4674597685733628 1 {M(Oxidation (M))|F}TD{M(Oxidation (M))|F}{I|L} 5 9 14.068 0 0 1.1925 0 0 166.23685880905856 387.16620813541255 553.4030669444711 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}TD{M(Oxidation (M))|F}{I|L} 1.1925 - 41 + NaN NaN 106179.3 NaN 20536 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25026 98.292 NaN 146450 35 0 30906 0.261 + 22878 QYPFPLPVF 9 32 554.2983885054831 NaN 0 554.2979125976562 PEAK HCD FTMS 0 0 0 25022 62528.83984375 0.40154887746607876 4 -0.09478759765625 4 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 26.88365393820708 0.14119366324382274 1 VP{I|L}P 4 6 35.433 0 0 3.202 0 0 165.0826780899468 532.2205294244749 697.3032075144217 0 0 0 0 0 1.5 0 0 0 VP{I|L}P 3.202 - 30 + NaN NaN 112626.4 NaN 20537 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25027 98.295 NaN 256470 35 0 26611 0.261 -1 0 49 642.2650803900248 1282.5156078468494 2 642.2656860351562 MULTI HCD FTMS 0 0 0 25022 107358.078125 0.33943830704643113 -9 0.18358612060546875 5 NaN NaN 1 DY{I|L}EW 5 -1 70.433 0 0 5.4918 0 0 0 573.1959793291572 573.1959793291572 35.91251590079672 0 0 0 0 1.8494850021680094 1.6989700043360187 0 0 DY{I|L}EW 5.4918 - 330 + NaN NaN 115320.4 NaN 20538 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25028 98.298 NaN 53068 35 0 6309.5 0.263 + -1 KRRQLCVRKLM 11 33 510.6340702475364 1528.8803813428092 3 510.63427734375 MULTI HCD FTMS 0 0 0 25022 24559.841796875 0.2658093570285521 30 -0.5331954956054688 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82179.4 NaN 20539 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25029 98.302 NaN 81249 35 0 15298 0.261 + -1 KILPELILML 10 35 599.8795979385567 1197.7446429439133 2 599.8826904296875 MULTI HCD FTMS 0 0 0 25022 14467.205078125 0.44403747985417374 -2 0.04241180419921875 7 Oxidation (M) _KILPELILM(Oxidation (M))L_ REV__ENST00000467062.5_1_9:15459769-15459898:+|nuORF 1.4819007175156935 0.4674597685733628 1 EM 2 -1 9.464 0 0 0.79015 0 0 506.34762253551327 428.2803737442701 934.6279962797834 0 0 0 0 0 0 0 0 0 EM 0.79015 - 3 + NaN NaN 95962.8 NaN 20540 4487 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25031 98.307 NaN 205750 35 0 10888 0.327 + 23427 RLLYIFFSWLK 11 66 495.95872205178085 1484.8543367555426 3 495.95904541015625 MULTI HCD FTMS 0 0 0 25030 142205.59375 0.6061036595745134 13 -0.2375640869140625 1 Unmodified _RLLYIFFSWLK_ REV__ENSG00000175826|ENST00000574322|CTDNEP1 0.40826533853263924 0.41713015341995335 1 K 1 -1 6.7827 0 0 0.45679 0 0 1026.582065965532 327.1446932428344 1353.7267592083663 0 0 0 0 0 0.5 0 0 0 K 0.45679 + + 13 + NaN NaN 128879.4 NaN 20541 4488 25030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25032 98.311 NaN 214410 35 0 82775 0.261 + 20786 PHCEDFSWF 9 33 584.2318537664512 1166.4491545997023 2 584.2322387695312 MULTI HCD FTMS 0 0 0 25030 57763.765625 0.16384433462832287 5 -0.091217041015625 2 Unmodified _PHCEDFSWF_ REV__ENSG00000118193|ENST00000367350|KIF14 1.844237919475145 0.33703635659052655 1 {I|L} 1 -1 2.2185 0 0 0.19019 0 0 488.77241007020854 561.5751436822874 1050.347553752496 0 0 0 0 0 0 0 0 0 {I|L} 0.19019 - 6 + NaN NaN 130860.7 NaN 20542 4488 25030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25033 98.315 NaN 109400 35 0 14643 0.262 + 339 AGRHNYIF 8 47 489.2505947141313 976.4866364950626 2 489.2506103515625 MULTI HCD FTMS 0 0 0 25030 38400.53125 0.7621806575143814 1 -0.0129547119140625 3 Unmodified _AGRHNYIF_ ENSG00000144891|ENST00000349243|AGTR1 19.438996006549623 0.45076845602799126 1 EY{I|L}{M(Oxidation (M))|F} 4 5 40.477 0 0 4.1452 0 0 406.2221852033219 0 406.2221852033219 0 40.477372199242296 0 0 0 0.8807196863200843 0 0.4247425010840047 0 EY{I|L}{M(Oxidation (M))|F} 4.1452 - 16 NaN NaN 100519.5 NaN 20543 4488 25030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25035 98.32 NaN 2815500 35 0 708480 0.327 + 2831 DYLEWPEYF 9 86 631.2739989726772 1260.5334450121543 2 631.27392578125 MULTI HCD FTMS 0 0 0 25034 1328942.875 0.4135649131880908 -6 0.14025115966796875 1 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 111.28704002717404 0.0027322905094575235 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F} 9 0 + 104.16 0 0 8.2629 8.2629 95.015 0 0 0 27.024597658517052 86.61572862389083 27.024597658517052 20.60378004088497 0 2.7134679910804405 1.6989700043360187 1.0189301784845295 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWY[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWE[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[QG]|[NA]}E{I|L}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EGN{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WN{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YDWPEY{M(Oxidation (M))|F} 8.2629;6.6284;6.3885;6.2666;5.8679;5.7552;5.7146;5.658;5.658;5.237 +;-;-;-;-;-;-;-;-;- + 5230 NaN NaN 511551 NaN 20544 4489 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25036 98.324 NaN 701200 35 0 103110 0.261 + 28962 TYAPLFSLPSF 11 56 621.8240276167346 1241.6335023002691 2 621.823974609375 MULTI HCD FTMS 0 0 0 25034 651494 0.47193560029910053 6 -0.10439300537109375 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 145.12958885780327 0.00015404424638450038 1 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F} 11 0 + 96.572 0 0 7.7779 7.7779 93.826 0 0 0 1.518637558036687 1.518637558036687 1.518637558036687 17.501225267834002 0 3.1237125054200234 1.6989700043360187 1.5114393726401687 0 + + [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]VVS{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]A[{I|L}T]{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]A[VP]{M(Oxidation (M))|F}T{I|L}PS{M(Oxidation (M))|F};[YT]A[{I|L}P]{M(Oxidation (M))|F}[VP]A[YT];[WY]{I|L}{[ET]|[MV]}[{I|L}T]A[{M(Oxidation (M))|F}V];[WY]{I|L}SETVV[{M(Oxidation (M))|F}V];[WY]{I|L}{[ET]|[MV]}SVV[{M(Oxidation (M))|F}V];[YT]A[VP]{M(Oxidation (M))|F}[{I|L}P]A[YT] 7.7779;6.3683;5.9851;5.7597;4.0298;4.0297;3.7036;3.5274;2.0117 +;-;-;-;-;-;-;-;- + 560 NaN NaN 186096.6 NaN 20545 4489 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25037 98.328 NaN 128880 35 0 14926 0.261 + 13490 KYPENFFLL 9 43 585.8130797502249 1169.6116065672497 2 585.8131713867188 MULTI HCD FTMS 0 0 0 25034 34163.46875 0.4707003579021017 42 -0.6995620727539062 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3657704084 0 778.3657704084 0 31.197887582883936 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 10 NaN NaN 103066.4 NaN 20546 4489 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25038 98.331 NaN 284650 35 0 25181 0.261 + 11246 IYLINSWPF 9 72 576.8082990795882 1151.6020452259763 2 576.8090209960938 MULTI HCD FTMS 0 0 0 25034 64363.07421875 0.38902727992629776 -2 0.03914642333984375 4 Unmodified _IYLINSWPF_ ENSG00000154803|ENST00000285071|FLCN;FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;nc|ENSG00000154803|Q8NFG4-2|FLCN 92.65332237495696 0.004456439685314431 1 [Y{I|L}]{I|L}{I|L}NSWP{M(Oxidation (M))|F} 9 0 + 90.53 0 0 7.8612 7.8612 93.837 0 0 0 17.191512336730028 75.3798729349446 17.191512336730028 16.822581265925436 0 2.7059771852360797 1.154901959985743 0.3494850021680094 0.7614393726401688 + + [Y{I|L}]{I|L}{I|L}NSWP{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}GGSWP{M(Oxidation (M))|F};[Y{I|L}]{I|L}[WK]{[DA]|[EG]}P{M(Oxidation (M))|F};[YV]WS[QP]{I|L}{I|L}{M(Oxidation (M))|F} 7.8612;6.4004;4.9338;2.2141 +;-;-;- + 309 NaN NaN 129127.9 NaN 20547 4489 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25039 98.334 NaN 37152 35 0 4071.8 0.261 + 24247 RYFLPPYTF 9 29 602.3141250636202 NaN 0 602.3140258789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.723162845929126 0.26266733336404485 1 M 1 9 9.732 0 0 0.80924 0 0 492.271791531734 576.2920016520704 1068.5637931838044 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.80924 - 3 + NaN NaN 88987.7 NaN 20548 4489 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25040 98.338 NaN 66391 35 0 8016.2 0.261 -1 EECDCGYSD 9 36 539.1626491083023 NaN 0 539.1630859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _EEC(Carbamidomethyl (C))DCGYSD_ ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;nc|ENSG00000137845|O14672-2|ADAM10 0.5247636613948944 0.2927039108006614 1 {I|L} 1 -1 6.9897 0 0 0.64941 0 0 131.81887624219195 828.3775118463499 960.1963880885419 0 0 0 0 0 0 0 0 0 {I|L} 0.64941 - 3 + NaN NaN 88947.6 NaN 20549 4489 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25042 98.343 NaN 1397800 35 0 340870 0.327 + 4692 EYPFILDAF 9 68 557.776200349485 1113.5378477657698 2 557.776611328125 MULTI HCD FTMS 0 0 0 25041 959383.4375 0.18537615740125732 7 -0.1171875 1 Unmodified _EYPFILDAF_ ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF 100.37149154755038 0.004254194004462789 1 AD{[QG]|[NA]}{I|L}{I|L}DA{M(Oxidation (M))|F} 9 4 76.278 0 0 6.8501 0 0 165.0785330848958 0 165.0785330848958 0 5.625918950875501 0 0 0 0.805462187404089 0 1.9802046884880937 0.3807196863200844 AD{[QG]|[NA]}{I|L}{I|L}DA{M(Oxidation (M))|F} 6.8501 - 457 + NaN NaN 298174.5 NaN 20550 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25043 98.347 NaN 256820 35 0 12126 0.262 -1 0 79 442.60091065281483 1324.7809025586446 3 442.6010437011719 MULTI HCD FTMS 0 0 0 25041 190175.421875 0.9311410652786489 -7 0.16310882568359375 2 NaN NaN 1 P 1 -1 8.4949 0 0 0.64123 0 0 1104.650102243018 120.05056940250233 1224.7006716455203 0 0 0 0 0 0.5 0 0 0 P 0.64123 - 13 + NaN NaN 133790.1 NaN 20551 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25044 98.351 NaN 90343 35 0 21164 0.261 + 16535 LTPGLSWLL 9 31 500.29729730179946 998.5800416703989 2 500.2971496582031 MULTI HCD FTMS 0 0 0 25041 23538.69140625 0.3932435824128465 -1 0.022857666015625 3 Unmodified _LTPGLSWLL_ ENSG00000147804|ENST00000301305|SLC39A4;nc|ENSG00000147804|Q6P5W5-2|SLC39A4 14.838274106304384 0.23215694253501695 1 SW{I|L}{I|L} 4 5 40.433 0 0 4.0491 0 0 481.28999708501306 0 481.28999708501306 0 33.44335023848103 0 0 0 1 0 0 0 + SW{I|L}{I|L} 4.0491 + + 16 NaN NaN 106643.4 NaN 20552 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25045 98.354 NaN 136710 35 0 22302 0.261 + 29969 VFIELPLSI 9 38 515.8130022530686 NaN 0 515.812744140625 PEAK HCD FTMS 0 0 0 25041 22521.4453125 0.23875802049028158 7 -0.1171875 4 Unmodified _VFIELPLSI_ ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;nc|ENSG00000135424|Q13683|ITGA7 13.90604991867851 0.22786006501039813 1 {I|L} 1 8 14.732 0 0 1.4308 0 0 488.2646020629746 425.240224739464 913.5048268024386 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.4308 + + 4 + NaN NaN 107905.8 NaN 20553 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25046 98.357 NaN 87963 35 0 5583.7 0.261 + 2788 DYGIVADLF 9 35 506.7529379050011 1011.4913228768022 2 506.7533874511719 MULTI HCD FTMS 0 0 0 25041 29741.5859375 0.1567703340218684 7 -0.1171875 5 Unmodified _DYGIVADLF_ ENSG00000140374|ENST00000557943|ETFA;ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA 29.081581746732265 0.1154664336125038 1 VAD{I|L}{M(Oxidation (M))|F} 5 4 48.443 0 0 4.7893 0 0 448.19627577949376 0 448.19627577949376 0 32.95880017344075 0 0 0 1.3494850021680094 0 0 0 + VAD{I|L}{M(Oxidation (M))|F} 4.7893 + + 49 NaN NaN 95738 NaN 20554 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25047 98.36 NaN 89460 35 0 9275.4 0.261 -1 SVCIYIYIY 9 39 597.2978748896904 1192.5811968461808 2 597.2980346679688 MULTI HCD FTMS 0 0 0 25041 8598.7158203125 0.18198274163023878 1 -0.03278350830078125 6 Carbamidomethyl (C) _SVC(Carbamidomethyl (C))IYIYIY_ ENST00000454857.5_1_10:119966135-119966366:+|nuORF 4.75600775471527 0.31496297302216103 1 Y[Y{I|L}] 3 -1 9.437 0 0 0.79131 0 0 735.3599271702027 0 735.3599271702027 0 2.447274948966937 0 0 0 0.5 0 0 0 Y[Y{I|L}] 0.79131 + + 9 + NaN NaN 101235.4 NaN 20555 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25048 98.364 NaN 149330 35 0 22904 0.261 + 6269 FPFGFFTTV 9 45 531.7683499496134 1061.5221469660266 2 531.76904296875 MULTI HCD FTMS 0 0 0 25041 31622.744140625 0.21315282842069133 -5 0.1044158935546875 7 Unmodified _FPFGFFTTV_ ENSG00000204308|ENST00000375094|RNF5 21.74664581756881 0.17247014374749275 1 E{M(Oxidation (M))|F}TTV 5 5 46.454 0 0 4.3761 0 0 466.24229628730626 0 466.24229628730626 0 43.979400086720375 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E{M(Oxidation (M))|F}TTV 4.3761 - 36 NaN NaN 102152.1 NaN 20556 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25049 98.367 NaN 28764 35 0 3729.9 0.261 + 35124 YVEMSTFDIA 10 29 588.2681884765625 NaN 0 588.2681884765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YVEMSTFDIA_ ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF 3.5964929083625545 0.337106189561315 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89085.2 NaN 20557 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25050 98.37 NaN 51445 35 0 4962.8 0.261 + 26602 SVVSLFYGAI 10 37 528.2909545898438 NaN 0 528.2909545898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SVVSLFYGAI_ ENSG00000188269|ENST00000322301|OR7A5 3.2813086475875832 0.33737594360511275 1 {M(Oxidation (M))|F} 1 9 6.9897 0 0 0.66473 0 0 127.03046132636867 774.3855684869749 901.4160298133436 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.66473 + + 2 + NaN NaN 90778.5 NaN 20558 4490 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25052 98.375 NaN 56713 35 0 5041.1 0.327 + 23467 RLRRQERERKF 11 35 525.3095760031196 1572.9068986095585 3 525.310302734375 MULTI HCD FTMS 0 0 0 25051 7293.4130859375 0.15702481337093738 14 -0.23342132568359375 1 Unmodified _RLRRQERERKF_ ENSG00000159450|ENST00000614923|TCHH;TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant 0 0.41892066650488113 1 V 1 11 5.4846 0 0 0.34869 0 0 1191.6963711210803 279.1239412897094 1470.8203124107897 0 0 0 0 0 0 0 0 0 V 0.34869 - 3 + NaN NaN 94513.5 NaN 20559 4491 25051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25054 98.382 NaN 658840 35 0 125630 0.327 + 28316 TMFGEFILL 9 51 535.7831589673837 1069.5517650015672 2 535.7832641601562 MULTI HCD FTMS 0 0 0 25053 114025.90625 0.21547412966871174 -3 0.06261444091796875 1 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 16.942295170755138 0.21397866736869717 1 {I|L}{I|L}{I|L} 3 6 36.198 0 0 3.3844 0 0 712.2898528414564 0 712.2898528414564 0 20.713337517843655 0 0 0 1 0 0 0 + {I|L}{I|L}{I|L} 3.3844 + + 12 NaN NaN 193192.4 NaN 20560 4492 25053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25055 98.386 NaN 429930 35 0 89351 0.261 + 32688 WPLEEVVLL 9 60 549.3157316629076 1096.6169103926152 2 549.3159790039062 MULTI HCD FTMS 0 0 0 25053 104449.59375 0.2702561071455139 1 -0.01564788818359375 2 Unmodified _WPLEEVVLL_ nc|ENSG00000089159|P49023-3|PXN 16.942295170755138 0.21397866736869717 1 V{I|L}{I|L} 3 6 35.445 0 0 3.2322 0 0 753.3700535448069 0 753.3700535448069 0 11.264100213633768 0 0 0 0.9247425010840047 0 0 0 + V{I|L}{I|L} 3.2322 + + 211 NaN NaN 150126.5 NaN 20561 4492 25053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25056 98.39 NaN 125140 35 0 15790 0.261 -1 MPSSVSWGIL 10 37 546.7735574217131 1091.5325619102261 2 546.77490234375 MULTI HCD FTMS 0 0 0 25053 17260.4375 0.18279027753255928 -3 0.06261444091796875 3 Oxidation (M) _M(Oxidation (M))PSSVSWGIL_ ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1 9.38312468134398 0.42334543440173333 1 {I|L}{I|L} 2 -1 20.969 0 0 1.9211 0 0 847.3550776883804 0 847.3550776883804 0 10.026975159433531 0 0 0 0 0 0 0 {I|L}{I|L} 1.9211 + + 11 NaN NaN 105113 NaN 20562 4492 25053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25057 98.393 NaN 368860 35 0 110130 0.261 + 10991 IYEPNFIFF 9 42 595.3002204512211 1188.585887969242 2 595.8009643554688 MULTI HCD FTMS 0 0 0 25053 33683.58984375 0.004235538738348873 -19 0.36016082763671875 4 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 29.081581746732265 0.1154664336125038 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 34.253 0 0 2.8818 0 0 763.3534173560425 0 763.3534173560425 0 25.300084529637985 0 0 0 0.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8818 + + 16 NaN NaN 133701.8 NaN 20563 4492 25053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25060 98.405 NaN 262710 35 0 20789 0.327 -1 0 67 582.3534213832811 1162.692289833362 2 582.3535766601562 MULTI HCD FTMS 0 0 0 25059 265670.75 0.7491939400471347 -2 0.02278900146484375 1 NaN NaN 1 C(Carbamidomethyl (C))N 2 -1 10.49 0 0 0.90218 0 0 166.1584286046496 719.4090180664356 885.5674466710852 0 0 0 0 0 0.7302046884880937 0 0 0 C(Carbamidomethyl (C))N 0.90218 - 32 + NaN NaN 138846.9 NaN 20564 4494 25059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25061 98.409 NaN 281190 35 0 35969 0.261 + 32405 VYYPELFVW 9 44 608.3082490050882 1214.6019450769763 2 608.3088989257812 MULTI HCD FTMS 0 0 0 25059 141011.625 0.11051986984419061 -9 0.166961669921875 2 Unmodified _VYYPELFVW_ ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion 67.34385681178166 0.00994769994983633 1 [YV]Y[EP]{I|L}{M(Oxidation (M))|F}VW 9 0 + 73.183 0 0 6.0253 6.0253 91.544 0 0 0 3.5784094103974695 3.5784094103974695 3.5784094103974695 25.00508444608478 0 2.6861818737241734 1.2218487496163564 0 0 + + [YV]Y[EP]{I|L}{M(Oxidation (M))|F}VW;{[CT]|[{M(Oxidation (M))|F}G]}V{M(Oxidation (M))|F}{I|L}[EP]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[WQ]{M(Oxidation (M))|F}VW;[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F}{I|L}[EP]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6.0253;3.9666;3.3267;3.1621 +;-;-;- + 197 NaN NaN 140975.8 NaN 20565 4494 25059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25062 98.413 NaN 153570 35 0 11469 0.261 + 13783 KYPSPFFVF 9 54 566.2978935444163 NaN 0 566.2976684570312 PEAK HCD FTMS 0 0 0 25059 34912.03125 0.6441278007189888 1 -0.01898956298828125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 34.40172386719151 0.09622929880997558 1 W{I|L}{[CA]|SS}[NP]V 7 6 18.266 0 0 1.6156 0 0 182.120859255045 162.05599390201408 344.1768531570591 0 0 0 0 0 1.3494850021680094 0 0 0 W{I|L}{[CA]|SS}[NP]V 1.6156 - 74 + NaN NaN 106917 NaN 20566 4494 25059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25063 98.416 NaN 51357 35 0 7090.5 0.261 + 32411 VYYTPVAYKT 10 30 602.8157201761838 NaN 0 602.8163452148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VYYTPVAYKT_ REV__tr|U7ST97|U7ST97_FUSNUGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatAPE=3SV=1 1.6526216038709556 0.33876987398426067 1 T 1 -1 6.9897 0 0 0.58072 0 0 166.08576657728491 933.4665621393186 1099.5523287166036 0 0 0 0 0 0 0 0 0 T 0.58072 + + 1 + NaN NaN 83608 NaN 20567 4494 25059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25064 98.419 NaN 39199 35 0 5395.9 0.261 -1 YVRRPYSCH 9 25 619.2985073968824 1236.5824618605648 2 619.2982788085938 MULTI HCD FTMS 0 0 0 25059 7190.8193359375 0.056062233671234585 -10 0.20269012451171875 5 Carbamidomethyl (C) _YVRRPYSC(Carbamidomethyl (C))H_ ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF 4.3292370932331545 0.3181982124262546 1 [YV]Y 3 -1 34.705 0 0 2.8065 0 0 0 808.3637179010374 808.3637179010374 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 [YV]Y 2.8065 - 3 + NaN NaN 91599.7 NaN 20568 4494 25059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25066 98.424 NaN 564130 35 0 43482 0.326 -1 QVSQMMMPQF 10 78 637.7623406917724 1273.5101284503446 2 638.2633666992188 MULTI HCD FTMS 0 0 0 25065 247460.125 0.7991358254309242 2 -0.03565216064453125 1 3 Oxidation (M) _QVSQM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))PQF_ ENST00000342992.10_3_2:179400465-179400825:-|nuORF 32.78568957990786 0.20801173326193015 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[CP]|[EA]}E[QP]{M(Oxidation (M))|F} 10 -1 + 71.145 0 0 5.5865 5.5865 84.272 0 0 0 25.764837301042718 58.64893351526163 25.764837301042718 4.018637558036673 0 0.6237125054200234 2 1.0994850021680094 0.4247425010840047 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[CP]|[EA]}E[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}MQ;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[CP]|[EA]}Y[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[CP]|[EA]}E{M(Oxidation (M))|F}PQ;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[CP]|[EA]}[QP]Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}E[QP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{M(Oxidation (M))|F}PQ;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}E{I|L}MQ;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[CP]|[EA]}Y{M(Oxidation (M))|F}PQ 5.5865;5.271;5.1138;4.9845;4.9566;4.8957;4.7602;4.641;4.603;4.3545 -;-;-;-;-;-;-;-;-;- 1339 NaN NaN 165371.9 NaN 20569 4495 25065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25067 98.429 NaN 201750 35 0 8887.3 0.261 + 20445 PALARRRIDL 10 72 590.866799230865 1179.71904552853 2 590.8668212890625 MULTI HCD FTMS 0 0 0 25065 198900.3125 0.8659601318557195 -2 0.02613067626953125 2 Unmodified _PALARRRIDL_ REV__ENSG00000113971|ENST00000337331|NPHP3;REV__ENST00000471702.2_2_3:132363653-132416205:-|nuORF;REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF;REV__nc|ENSG00000113971|Q7Z494-2|NPHP3 5.731851221503515 0.44496410492002586 1 {M(Oxidation (M))|F}DT{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 12.932 0 0 1.0962 0 0 504.42764908816054 0 504.42764908816054 0 0.6246936830414977 0 0 0 0 0 0 0 {M(Oxidation (M))|F}DT{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.0962 - 26 + NaN NaN 118074.8 NaN 20570 4495 25065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25068 98.432 NaN 472880 35 0 54632 0.261 -1 DVTTCTKSPCD 11 60 642.2650803900248 1282.5156078468494 2 642.2650146484375 MULTI HCD FTMS 0 0 0 25065 272418.65625 0.861316904142966 -1 0.01898956298828125 3 2 Carbamidomethyl (C) _DVTTC(Carbamidomethyl (C))TKSPC(Carbamidomethyl (C))D_ ENSG00000139624|ENST00000317551|CERS5;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;ENST00000551697.5_1_12:50524330-50526777:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5 7.608950283845883 0.38555039536024605 1 DY{I|L}EW 5 -1 72.691 0 0 5.6678 0 0 0 573.1963421861683 573.1963421861683 34.675390846596486 0 0 0 0 1.774227503252014 2 0 0 DY{I|L}EW 5.6678 - 596 + NaN NaN 174669.5 NaN 20571 4495 25065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25069 98.435 NaN 110010 35 0 12480 0.262 + 22879 QYPFPLPVF 9 49 554.2983885054831 NaN 0 554.2975463867188 PEAK HCD FTMS 0 0 0 25065 27228.064453125 0.17485369541554385 12 -0.2183074951171875 4 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 16.942295170755138 0.2079222001251384 1 Y 1 8 6.9897 0 0 0.63165 0 0 778.4404221752255 162.05501733951408 940.4954395147396 0 0 0 0 0 0.5 0 0 0 + Y 0.63165 + + 2 + NaN NaN 95309.6 NaN 20572 4495 25065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25071 98.44 NaN 198910 35 0 11518 0.327 + 22488 QRQRHVRLHQK 11 60 495.95872205178085 1484.8543367555426 3 495.9588623046875 MULTI HCD FTMS 0 0 0 25070 160530.8125 0.6842087597606901 21 -0.37348175048828125 1 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.5059551277355931 0.4167017191902429 1 K 1 -1 5.7133 0 0 0.38477 0 0 982.555590074852 371.17084680728755 1353.7264368821395 0 0 0 0 0 0.5 0 0 0 K 0.38477 + + 9 + NaN NaN 111102.3 NaN 20573 4496 25070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25072 98.445 NaN 146030 35 0 16697 0.261 -1 MMSMFSCVF 9 35 586.2190175560058 1170.4234821788116 2 586.219482421875 MULTI HCD FTMS 0 0 0 25070 39865.77734375 0.4700864987911173 1 -0.01947784423828125 2 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))SMFSC(Carbamidomethyl (C))VF_ chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|19 1.844237919475145 0.33703635659052655 1 V{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.2772 0 0 906.2739124982437 0 906.2739124982437 0 3.979400086720375 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.2772 + + 17 NaN NaN 132736.6 NaN 20574 4496 25070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25073 98.448 NaN 110550 35 0 15068 0.261 + -1 VIWKMCDAF 9 37 564.7661641004162 NaN 0 564.7657470703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _VIWKM(Oxidation (M))CDAF_ REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8;REV__nc|ENSG00000189195|Q5XKL5|BTBD8 3.5964929083625545 0.27781873954207675 1 W{I|L} 2 -1 18.271 0 0 1.6205 0 0 165.07803024985725 660.2648409479124 825.3428711977697 0 0 0 0 0 0.8807196863200843 0 0 0 W{I|L} 1.6205 - 8 + NaN NaN 95490 NaN 20575 4496 25070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25074 98.452 NaN 44527 35 0 4894.2 0.261 + 23719 RQRHLENFRIR 11 26 508.9600648001235 NaN 0 508.7944641113281 PEAK HCD FTMS 0 0 0 25070 9650.310546875 1 0 0 4 Unmodified _RQRHLENFRIR_ ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;nc|ENSG00000103599|Q86VS3-3|IQCH;nc|ENSG00000103599|Q86VS3-4|IQCH 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87004.6 NaN 20576 4496 25070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25075 98.455 NaN 67585 35 0 14047 0.261 + 4282 EVLENLNF 8 37 489.24993896484375 NaN 0 489.24993896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EVLENLNF_ REV__tr|U7SWR9|U7SWR9_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01151PE=3SV=1 7.289230182591677 0.38822285293237185 1 Q 1 -1 5.4846 0 0 0.56166 0 0 378.2956851544938 467.1012362115844 845.3969213660782 0 0 0 0 0 0 0 0 0 Q 0.56166 - 2 + NaN NaN 91906.5 NaN 20577 4496 25070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25077 98.46 NaN 2865300 35 0 699340 0.327 + 2832 DYLEWPEYF 9 79 631.2739989726772 1260.5334450121543 2 631.2740478515625 MULTI HCD FTMS 0 0 0 25076 1927048.625 0.5996944731784312 2 -0.04228973388671875 1 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 115.6920309560759 0.002013163348980568 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPE[Y{M(Oxidation (M))|F}] 9 0 + 93.72 0 0 7.435 7.435 93.005 0 0 0 8.138181262758266 7.147642715192504 7.147642715192504 15.822646798160562 0 2.7302046884880937 1.6989700043360187 1.055462187404089 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPE[Y{M(Oxidation (M))|F}];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWEP[{M(Oxidation (M))|F}E];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPY[{M(Oxidation (M))|F}E];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWYP[{M(Oxidation (M))|F}E];[PS][SG]EPWE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YW[CS]S[KP];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EAD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[QG]|[NA]}E{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[{I|L}A][SG]EPWEP[{M(Oxidation (M))|F}E] 7.435;6.1797;5.9151;5.7988;5.4998;5.0697;4.9275;4.8309;4.7687;4.6255 +;-;-;-;-;-;-;-;-;- + 3422 NaN NaN 429037.2 NaN 20578 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25078 98.464 NaN 384130 35 0 47833 0.261 + 28963 TYAPLFSLPSF 11 47 621.8240276167346 1241.6335023002691 2 621.823974609375 MULTI HCD FTMS 0 0 0 25076 196863.375 0.14260581840743267 14 -0.25051116943359375 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 96.36657018975838 0.015470569860761748 1 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}[PS]{M(Oxidation (M))|F} 11 0 + 82.255 0 0 6.6247 6.6247 93.549 0 0 0 29.357285695614365 67.56222007982603 29.357285695614365 40.23056412509479 0 2.3494850021680094 2 1.1549471895720984 0 + + [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L}[PS]{M(Oxidation (M))|F};[WY]{I|L}{[ET]|[MV]}[{I|L}T]A[{M(Oxidation (M))|F}V];[WY]{I|L}{[ET]|[MV]}SVV[{M(Oxidation (M))|F}V];[WY]{I|L}S{[ET]|[MV]}VV[{M(Oxidation (M))|F}V] 6.6247;3.3846;2.8823;2.8571 +;-;-;- + 203 NaN NaN 139680.1 NaN 20579 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25079 98.468 NaN 83902 35 0 4539.8 0.263 -1 MRRRRKIILMN 11 45 501.6343262374809 1501.8811493126427 3 501.63421630859375 MULTI HCD FTMS 0 0 0 25076 53690.9453125 0.5023281988092106 13 -0.23445892333984375 3 Oxidation (M) _M(Oxidation (M))RRRRKIILMN_ ENST00000559471.5_1_15:49284721-49284799:-|nuORF 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 110626.4 NaN 20580 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25080 98.471 NaN 247910 35 0 25978 0.261 + 11247 IYLINSWPF 9 70 576.8082990795882 1151.6020452259763 2 576.8084716796875 MULTI HCD FTMS 0 0 0 25076 55050.42578125 0.3327391934026881 6 -0.12017822265625 4 Unmodified _IYLINSWPF_ ENSG00000154803|ENST00000285071|FLCN;FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;nc|ENSG00000154803|Q8NFG4-2|FLCN 99.79894945604345 0.0042691968066200965 1 [Y{I|L}]{I|L}{I|L}NSWP{M(Oxidation (M))|F} 9 0 + 94.198 0 0 8.1797 8.1797 94.372 0 0 0 17.86098023303616 87.03070327321406 17.86098023303616 16.822581265925436 0 2.504432191740108 1.2218487496163564 0.6747425010840047 0.7614393726401688 + + [Y{I|L}]{I|L}{I|L}NSWP{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}GGSWP{M(Oxidation (M))|F};[Y{I|L}]{I|L}[WK]{[DA]|[EG]}P{M(Oxidation (M))|F};[Y{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A]WP{M(Oxidation (M))|F};[YV]WS[QP]{I|L}{I|L}{M(Oxidation (M))|F};[YV]WA[{I|L}A][VS]P{M(Oxidation (M))|F};[YV][VS][{I|L}A]AWP{M(Oxidation (M))|F};[YV]WA[{I|L}A][PA][YV] 8.1797;6.7189;4.6663;4.2903;2.5543;2.0288;2.0288;0.099334 +;-;-;-;-;-;-;- + 298 NaN NaN 121515.7 NaN 20581 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25081 98.474 NaN 65858 35 0 12388 0.261 + 33595 YIRALRRHL 9 34 599.3723824383464 NaN 0 599.3729858398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YIRALRRHL_ ENSG00000171451|ENST00000310045|DSEL 2.0597508629832335 0.2852655770354268 1 QM 2 9 7.9588 0 0 0.66505 0 0 506.33557190618654 428.28034387760005 934.6159157837866 0 0 0 0 0 0 0 0 0 QM 0.66505 - 5 + NaN NaN 94056.9 NaN 20582 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25082 98.478 NaN 72988 35 0 12120 0.261 + -1 TGCVMEPLCV 10 26 562.7409232844693 NaN 0 562.7410888671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _TGC(Carbamidomethyl (C))VM(Oxidation (M))EPLCV_ REV__ENSG00000181284|ENST00000323206|TMEM102 1.6526216038709556 0.33876987398426067 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.62215 0 0 342.0759494968698 631.3465670221311 973.422516519001 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.62215 + + 2 + NaN NaN 107081.4 NaN 20583 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25083 98.481 NaN 29102 35 0 4752.6 0.261 + 20667 PFKWIPMY 8 23 541.2811889648438 NaN 0 541.2811889648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PFKWIPMY_ REV__ENSG00000141736|ENST00000269571|ERBB2;REV__ENST00000582788.5_1_17:37872360-37873734:+|nuORF;REV__ENST00000583038.5_1_17:37872360-37881463:+|nuORF;REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF;REV__nc|ENSG00000141736|P04626-4|ERBB2;REV__nc|ENSG00000141736|P04626-5|ERBB2;REV__nc|ENSG00000141736|P04626-6|ERBB2 0.7936320650641473 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.64687 0 0 362.3924648419937 658.1182345025999 1020.5106993445936 0 0 0 0 0 0 0 0 0 G 0.64687 - 1 + NaN NaN 103382.3 NaN 20584 4497 25076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25085 98.486 NaN 789940 35 0 208870 0.327 + 4693 EYPFILDAF 9 60 557.776200349485 1113.5378477657698 2 557.7767333984375 MULTI HCD FTMS 0 0 0 25084 532506.625 0.10289320002276182 15 -0.2665557861328125 1 Unmodified _EYPFILDAF_ ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF 88.90359156742426 0.00455469703666567 1 [EP]Y{M(Oxidation (M))|F}{I|L}{I|L}DA{M(Oxidation (M))|F} 9 2 + 78.568 0 0 7.0557 7.0557 93.744 0 0 0 8.156753288559813 9.407365922476814 8.156753288559813 29.34086099766519 0 2.4247425010840047 0 1.1747425010840047 0 [EP]Y{M(Oxidation (M))|F}{I|L}{I|L}DA{M(Oxidation (M))|F};{[DA]|[EG]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[EP]{I|L}{I|L} 7.0557;4.4208 -;- 428 NaN NaN 205401.2 NaN 20585 4498 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25086 98.49 NaN 188640 35 0 9075.6 0.262 -1 0 65 442.60091065281483 1324.7809025586446 3 442.60107421875 MULTI HCD FTMS 0 0 0 25084 131943.109375 0.6460227415736595 1 -0.01616668701171875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 109626.7 NaN 20586 4498 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25087 98.494 NaN 54046 35 0 9157.7 0.261 + 10269 IKEIPVGWKK 10 31 599.3723824383464 NaN 0 599.3800659179688 PEAK HCD FTMS 0 0 0 25084 7126.283203125 0.2189753594453239 4 -0.07129669189453125 3 Unmodified _IKEIPVGWKK_ REV__ENSG00000198900|ENST00000361337|TOP1 1.4819007175156935 0.33891598740166873 1 M 1 -1 6.9897 0 0 0.58407 0 0 634.3842169257179 428.2795809381469 1062.6637978638648 0 0 0 0 0 0 0 0 0 M 0.58407 - 1 + NaN NaN 107645.1 NaN 20587 4498 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25088 98.497 NaN 43881 35 0 5133.6 0.261 + 6308 FPFPYLDTF 9 33 573.7796906099979 NaN 0 573.7796630859375 PEAK HCD FTMS 0 0 0 25084 21567.634765625 0.7670945465546447 6 -0.10356903076171875 4 Unmodified _FPFPYLDTF_ ENSG00000049246|ENST00000377532|PER3;nc|ENSG00000049246|P56645|PER3 23.1484247019978 0.16626532474190622 1 TD{I|L} 3 8 22.892 0 0 1.9984 0 0 165.0786324555832 648.2830904596311 813.3617229152144 0 0 0 0 0 0.6694451763165201 0 0 0 TD{I|L} 1.9984 - 10 + NaN NaN 84084.6 NaN 20588 4498 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25090 98.502 NaN 553730 35 0 148230 0.327 + 4882 FAFPDEFVF 9 55 559.7632240847271 1117.511895236254 2 559.763427734375 MULTI HCD FTMS 0 0 0 25089 438137.125 0.6197265799562632 4 -0.07788848876953125 1 Unmodified _FAFPDEFVF_ ENSG00000123159|ENST00000393033|GIPC1;ENSG00000137960|ENST00000370759|GIPC2;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1 92.8221339359638 0.0044520161739443126 1 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}PDE{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 74.365 0 0 6.6545 6.6545 93.026 0 0 0 4.137342758552691 67.37510972025312 4.137342758552691 29.693962872398032 0 3.055462187404089 0 0.4247425010840047 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}PDE{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[EP][NP]PTV{M(Oxidation (M))|F} 6.6545;3.9973 +;- + 146 NaN NaN 165791.2 NaN 20589 4499 25089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25091 98.506 NaN 321590 35 0 59389 0.261 -1 0 53 519.1368916714705 518.1296152048704 1 521.1348876953125 MULTI HCD FTMS 0 0 0 25089 83404.46875 0.5402450688174372 -82 1.62249755859375 2 NaN NaN 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L} 3 -1 20.233 0 0 3.9051 0 0 0 123.9327517617642 123.9327517617642 6.523269708257898 0 0 0 0 0 1.154901959985743 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L} 3.9051 - 30 NaN NaN 129452 NaN 20590 4499 25089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25092 98.51 NaN 146110 35 0 31180 0.261 + 6270 FPFGFFTTV 9 41 531.7683499496134 1061.5221469660266 2 531.7684936523438 MULTI HCD FTMS 0 0 0 25089 68288.28125 0.4602965584421124 4 -0.07788848876953125 3 Unmodified _FPFGFFTTV_ ENSG00000204308|ENST00000375094|RNF5 26.88365393820708 0.12808753336095696 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}TTV 6 4 51.019 0 0 4.8062 0 0 319.17244155097814 0 319.17244155097814 0 46.414412723804546 0 0 0 0.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}TTV 4.8062 - 52 NaN NaN 103739.2 NaN 20591 4499 25089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25093 98.513 NaN 143930 35 0 21064 0.261 -1 KYVDIFCLL 9 49 585.8134954903587 NaN 0 585.8134155273438 PEAK HCD FTMS 0 0 0 25089 29132.58984375 0.4524338158825381 6 -0.10672760009765625 4 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ ENSG00000205413|ENST00000379958|SAMD9 12.240655878213236 0.2359303321180293 1 {I|L}{M(Oxidation (M))|F} 2 -1 15.969 0 0 1.3653 0 0 131.09490239002236 775.3410128229124 906.4359152129348 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.3653 + + 23 + NaN NaN 124434.8 NaN 20592 4499 25089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25094 98.517 NaN 73598 35 0 7205.2 0.261 + 7420 FVPTSVFFL 9 39 528.7930291287313 NaN 0 528.78466796875 PEAK HCD FTMS 0 0 0 25089 15288.18359375 1 0 0 5 Unmodified _FVPTSVFFL_ ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3 11.640296217721598 0.23883959125015683 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 13.583 0 0 1.2868 0 0 131.09435166719737 627.3112276666624 758.4055793338598 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.2868 + + 10 + NaN NaN 114388 NaN 20593 4499 25089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25095 98.52 NaN 70855 35 0 9765.2 0.261 + 9627 HTIRHVCI 8 37 489.76800537109375 NaN 0 489.76800537109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _HTIRHVCI_ REV__L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|15|1|anti-sense 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88901.5 NaN 20594 4499 25089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25097 98.525 NaN 3109700 35 0 396360 0.327 + 10992 IYEPNFIFF 9 86 595.3002204512211 1188.585887969242 2 595.3005981445312 MULTI HCD FTMS 0 0 0 25096 2018332.375 0.18381683483106936 -11 0.2051544189453125 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 131.26759243768294 0.0005280990274065272 1 Y{I|L}EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 95.35 0 0 8.0221 8.0221 86.654 0 0 0 0.24711128196314291 0.24711128196314291 0.24711128196314291 0.24711128196314291 0 2.579689690656103 1.5228787452803376 0.6694451763165201 0.3807196863200844 Y{I|L}EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}EPGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YE]{I|L}PN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NP][YE]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};Y{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[NP]E{I|L} 8.0221;8.0013;6.9271;6.5279;6.1761;5.5121;4.7026;4.1263;3.6868;3.3334 -;+;-;-;-;-;-;-;-;- + 742 + NaN NaN 553435.4 NaN 20595 4500 25096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25098 98.529 NaN 572970 35 0 120030 0.261 + 28317 TMFGEFILL 9 35 535.7831589673837 1069.5517650015672 2 535.7833251953125 MULTI HCD FTMS 0 0 0 25096 271743.21875 0.5135116701037454 5 -0.0839080810546875 2 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 37.691 0 0 3.524 0 0 565.2216053693375 0 565.2216053693375 0 33.0866814795592 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.524 + + 10 NaN NaN 169944 NaN 20596 4500 25096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25099 98.533 NaN 103760 35 0 16549 0.261 + 32689 WPLEEVVLL 9 39 549.3157316629076 1096.6169103926152 2 549.3159790039062 MULTI HCD FTMS 0 0 0 25096 32940.734375 0.08523187423792074 9 -0.1470184326171875 3 Unmodified _WPLEEVVLL_ nc|ENSG00000089159|P49023-3|PXN 11.640296217721598 0.25978676193971967 1 V{I|L}{I|L} 3 6 33.94 0 0 3.095 0 0 753.3702870099625 0 753.3702870099625 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 + V{I|L}{I|L} 3.095 + + 27 NaN NaN 102047.3 NaN 20597 4500 25096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25100 98.536 NaN 102870 35 0 7646.6 0.261 -1 MPSSVSWGIL 10 46 546.7735574217131 1091.5325619102261 2 546.774169921875 MULTI HCD FTMS 0 0 0 25096 17401.904296875 0.18428842930666253 5 -0.0839080810546875 4 Oxidation (M) _M(Oxidation (M))PSSVSWGIL_ ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1 13.90604991867851 0.3810395177745597 1 {I|L}{I|L}{I|L} 3 -1 24.693 0 0 2.2622 0 0 734.2667103498062 0 734.2667103498062 0 3.7236374744834677 0 0 0 0 0 0 0 {I|L}{I|L}{I|L} 2.2622 - 18 NaN NaN 116247.6 NaN 20598 4500 25096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25101 98.539 NaN 49445 35 0 6056.6 0.261 + 5463 FIPMWCLFF 9 28 602.2899411678347 1202.5653294024694 2 602.28955078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FIPMWCLFF_ REV__ENSG00000163394|ENST00000295589|CCKAR 14.581692164780916 0.23437375358055648 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 34.693 0 0 2.8849 0 0 777.3292103498062 0 777.3292103498062 0 33.09894379144197 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8849 + + 12 NaN NaN 106273.6 NaN 20599 4500 25096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25103 98.544 NaN 1676300 35 0 222430 0.327 + 32406 VYYPELFVW 9 109 608.3082490050882 1214.6019450769763 2 608.3084106445312 MULTI HCD FTMS 0 0 0 25102 823669.1875 0.6455624591034266 -2 0.04227447509765625 1 Unmodified _VYYPELFVW_ ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion 109.62928328672726 0.0030029239606406397 1 [YV]YPE{I|L}{M(Oxidation (M))|F}VW 9 0 + 94.051 0 0 7.7434 7.7434 93.79 0 0 0 17.86098023303616 72.86561238325739 17.86098023303616 17.597046968434142 0 3.1861818737241734 1.2218487496163564 0.5356668758921829 0 + + [YV]YPE{I|L}{M(Oxidation (M))|F}VW;[YV]YPE{I|L}{M(Oxidation (M))|F}WV;{[CT]|[{M(Oxidation (M))|F}G]}V{M(Oxidation (M))|F}{I|L}EPY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]YPE{I|L}W{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F}{I|L}EPY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[WQ]{M(Oxidation (M))|F}VW;[EP]{I|L}{M(Oxidation (M))|F}VYYVW;[{M(Oxidation (M))|F}V]{I|L}EPYYVW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EP]VYYVW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VEPYYVW 7.7434;6.2946;5.818;4.836;4.6592;3.3267;3.3055;2.6328;2.4501;2.4327 +;-;-;-;-;-;-;-;-;- + 6849 NaN NaN 352103.1 NaN 20600 4501 25102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25104 98.549 NaN 112480 35 0 8565.1 0.261 -1 0 49 582.3534213832811 1162.692289833362 2 582.3538208007812 MULTI HCD FTMS 0 0 0 25102 138286.671875 0.38996967697059814 5 -0.09050750732421875 2 NaN NaN 1 G 1 -1 0.088644 0 0 0.007624 0 0 551.6479915929309 551.0150850885374 1102.6630766814683 0 0 0 0 0 0 0 0 0 G 0.007624 - 7 + NaN NaN 93193.6 NaN 20601 4501 25102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25105 98.552 NaN 142050 35 0 13852 0.261 + 13784 KYPSPFFVF 9 58 566.2978935444163 NaN 0 566.2979736328125 PEAK HCD FTMS 0 0 0 25102 49675.18359375 0.9165083099699098 8 -0.1275634765625 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1690317064107932 1 SV{[YC]|[HE]}[NP]V 7 7 16.884 0 0 1.4934 0 0 203.13837634488874 162.05587183170158 365.19424817659035 0 0 0 0 0 1.4247425010840047 0 0.3807196863200844 0 SV{[YC]|[HE]}[NP]V 1.4934 - 53 + NaN NaN 103891.6 NaN 20602 4501 25102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25107 98.557 NaN 537930 35 0 126660 0.327 -1 TYPCHYCNK 9 64 621.7555679204022 1241.4965829076043 2 621.7550659179688 MULTI HCD FTMS 0 0 0 25106 140482.59375 0.2874008652630654 -9 0.15920257568359375 1 2 Carbamidomethyl (C) _TYPC(Carbamidomethyl (C))HYC(Carbamidomethyl (C))NK_ ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant 4.3292370932331545 0.3181982124262546 1 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 8 -1 40.112 0 0 3.231 0 0 0 346.00461304948357 346.00461304948357 15.14645333192 0 0 0 0 0 1.6989700043360187 0.6747425010840047 0 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 3.231 - 266 NaN NaN 186185 NaN 20603 4502 25106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25108 98.562 NaN 238190 35 0 26313 0.261 -1 AACTMSFWYF 10 49 642.2650803900248 1282.5156078468494 2 642.2647094726562 MULTI HCD FTMS 0 0 0 25106 103256.15625 0.3264690974517365 6 -0.1077423095703125 2 Carbamidomethyl (C) _AAC(Carbamidomethyl (C))TMSFWYF_ ENSG00000204740|ENST00000454679|MALRD1 6.723162845929126 0.4397169348982109 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[{M(Oxidation (M))|F}T]Y 8 -1 67.925 0 0 5.2962 0 0 0 162.05598669403085 162.05598669403085 52.92464714820923 0 0 0 0 2.4247425010840047 2 0.7302046884880937 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[{M(Oxidation (M))|F}T]Y 5.2962 - 273 NaN NaN 120380.1 NaN 20604 4502 25106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25109 98.565 NaN 93102 35 0 6121.9 0.261 + 35 AALPLLRDRR 10 53 590.866799230865 1179.71904552853 2 590.8670654296875 MULTI HCD FTMS 0 0 0 25106 126050.5390625 0.5487912012558905 5 -0.085235595703125 3 Unmodified _AALPLLRDRR_ ENST00000495794.5_1_5:864585-881375:-|nuORF 1.4819007175156935 0.4674597685733628 1 C(Carbamidomethyl (C)) 1 10 11.99 0 0 1.0163 0 0 148.1703027731224 868.5096216728259 1016.6799244459482 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 1.0163 - 31 + NaN NaN 89487.9 NaN 20605 4502 25106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25110 98.568 NaN 172460 35 0 30778 0.261 + -1 MWPCVFLWV 9 46 619.2985073968824 1236.5824618605648 2 619.2974243164062 MULTI HCD FTMS 0 0 0 25106 69471.71875 0.5416266976198497 -2 0.03231048583984375 4 Carbamidomethyl (C) _MWPC(Carbamidomethyl (C))VFLWV_ REV__ENSG00000168575|ENST00000520262|SLC20A2 9.347437153973935 0.2795965555214564 1 [YV]Y[EP]{I|L} 6 -1 41.087 0 0 3.3227 0 0 0 469.1853426568969 469.1853426568969 10.870827893812418 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 [YV]Y[EP]{I|L} 3.3227 - 25 + NaN NaN 116068.4 NaN 20606 4502 25106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25111 98.572 NaN 187520 35 0 22075 0.261 + 33767 YLFNKDIFF 9 37 603.8135212822486 1205.6124896312972 2 603.813720703125 MULTI HCD FTMS 0 0 0 25106 50569.1484375 0.39694202268600715 -6 0.1168975830078125 5 Unmodified _YLFNKDIFF_ REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1 9.347437153973935 0.2795965555214564 1 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 -1 28.082 0 0 2.3293 0 0 0 179.08244333417352 179.08244333417352 13.389399919613965 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.3293 - 50 NaN NaN 112210.2 NaN 20607 4502 25106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25112 98.575 NaN 50855 35 0 7649.7 0.262 + -1 KCLAAPPPQ 9 27 491.26190667369303 NaN 0 491.2619934082031 PEAK HCD FTMS 0 0 0 25106 6743.54052734375 0.3087564200312307 1 -0.02275848388671875 6 Carbamidomethyl (C) _KC(Carbamidomethyl (C))LAAPPPQ_ REV__ENST00000383701.7_1_3:69061707-69061878:-|nuORF;REV__ENST00000456376.2_2_3:69061138-69061878:-|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106797.8 NaN 20608 4502 25106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25114 98.58 NaN 212280 35 0 12260 0.327 + 13948 KYRILLFFWSL 11 66 495.95872205178085 1484.8543367555426 3 495.9590148925781 MULTI HCD FTMS 0 0 0 25113 161919.625 0.6901281073511419 28 -0.43933868408203125 1 Unmodified _KYRILLFFWSL_ REV__ENSG00000196376|ENST00000360388|SLC35F1;REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant 0.4545168274142398 0.41692731010159206 1 K 1 -1 6.2371 0 0 0.42005 0 0 938.5278729877676 415.19806848697505 1353.7259414747427 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.42005 + + 13 + NaN NaN 133121.4 NaN 20609 4503 25113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25115 98.584 NaN 97137 35 0 6573.5 0.261 + 5122 FERRRELRRQK 11 49 525.3097421565196 1572.9073970697586 3 525.310302734375 MULTI HCD FTMS 0 0 0 25113 26510.640625 0.3735228406370191 -15 0.2731781005859375 2 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 Y 1 11 5.4846 0 0 0.34869 0 0 636.5454718762024 770.2605074518186 1406.805979328021 0 0 0 0 0 0 0 0 0 Y 0.34869 - 5 + NaN NaN 109761 NaN 20610 4503 25113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25117 98.589 NaN 1678400 35 0 308980 0.327 + 2833 DYLEWPEYF 9 69 631.2739989726772 1260.5334450121543 2 631.274169921875 MULTI HCD FTMS 0 0 0 25116 710445.3125 0.2210894535169155 9 -0.16298675537109375 1 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 99.79894945604345 0.0042691968066200965 1 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F} 9 0 + 97.534 0 0 7.7375 7.7375 94.783 0 0 0 19.621892823592972 87.85096435759962 19.621892823592972 27.501225267834002 0 2.6237125054200234 1.3979400086720375 1.0484550065040281 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWY[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWE[EP]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}WPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[QG]|[NA]}E{I|L}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EGE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WN{M(Oxidation (M))|F};[{I|L}A][SG]EPWEPE{M(Oxidation (M))|F} 7.7375;5.5558;5.5376;5.1733;5.1228;5.0134;4.9234;4.8253;4.6431;4.5183 +;-;-;-;-;-;-;-;-;- + 2240 NaN NaN 338209.2 NaN 20611 4504 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25118 98.594 NaN 551070 35 0 133880 0.264 + -1 YIYDAYLCF 9 87 409.85117456939497 1226.5316943083849 3 409.851318359375 MULTI HCD FTMS 0 0 0 25116 150583.609375 0.5200172645703132 -10 0.18433380126953125 2 Carbamidomethyl (C) _YIYDAYLC(Carbamidomethyl (C))F_ REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|0|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|5 8.745405648335112 0.2847203663274469 1 {I|L}Y 2 -1 43.271 0 0 3.5279 0 0 0 947.3602433409961 947.3602433409961 19.089934634871284 0 0 0 0 0.3807196863200844 2 0 0 {I|L}Y 3.5279 + + 28 + NaN NaN 172302.6 NaN 20612 4504 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25119 98.597 NaN 190050 35 0 31054 0.261 + 6183 FPELLPLSEL 10 43 579.3262456648534 1156.6379383965068 2 579.3261108398438 MULTI HCD FTMS 0 0 0 25116 130064.78125 0.26303747466207356 -10 0.18433380126953125 3 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 20.41453444215458 0.3201613495159799 1 {I|L}[{I|L}P]SE{I|L} 6 4 36.401 0 0 3.1471 0 0 486.24827773261876 0 486.24827773261876 0 29.41122510072759 0 0 0 1.25 0 0 0 + {I|L}[{I|L}P]SE{I|L} 3.1471 + + 15 NaN NaN 106725.3 NaN 20613 4504 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25120 98.6 NaN 205830 35 0 28738 0.263 -1 0 40 439.25454571932227 876.4945385054446 2 439.2547912597656 MULTI HCD FTMS 0 0 0 25116 54872.62109375 0.677005080746284 -6 0.10356903076171875 4 NaN NaN 1 N{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 6.9627 0 0 0.79438 0 0 526.3243247376696 0 526.3243247376696 0 1.4781748188863748 0 0 0 0 0 0 0 N{[MS]|[{M(Oxidation (M))|F}A]} 0.79438 - 13 + NaN NaN 119507.2 NaN 20614 4504 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25121 98.604 NaN 105700 35 0 11412 0.261 + 17138 LYLPSFFTY 9 42 575.7940788865984 1149.5736048399967 2 575.7945556640625 MULTI HCD FTMS 0 0 0 25116 25562.703125 0.17214705871830588 52 -0.784393310546875 5 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 39.957323273324995 0.06554068735427583 1 [Y{I|L}]{I|L} 3 6 34.309 0 0 2.9845 0 0 0 757.3199176664217 757.3199176664217 5.368931070804592 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + [Y{I|L}]{I|L} 2.9845 + + 12 NaN NaN 105249.3 NaN 20615 4504 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25123 98.609 NaN 273130 35 0 42912 0.327 + 7569 FYFFFFFF 8 61 404.52524995946993 1210.5539204786098 3 404.52569580078125 MULTI HCD FTMS 0 0 0 25122 58676.03515625 0.5798093882471937 -6 0.10672760009765625 1 Unmodified _FYFFFFFF_ ENST00000538582.5_1_12:21590984-21591200:+|nuORF 11.114462752807354 0.5120171699125776 1 {M(Oxidation (M))|F}{[YC]|[HE]}T{I|L}[RD]{M(Oxidation (M))|F} 8 5 22.396 0 0 1.85 0 0 147.06478837386823 0 147.06478837386823 0 19.921525057367404 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}{[YC]|[HE]}T{I|L}[RD]{M(Oxidation (M))|F} 1.85 - 26 + NaN NaN 115907.1 NaN 20616 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25124 98.613 NaN 52259 35 0 5262.6 0.261 + 10670 IPVIQIVYETL 11 34 644.3816057693734 NaN 0 644.3815307617188 PEAK HCD FTMS 0 0 0 25122 29151.369140625 0.5901122334047427 1 -0.02605438232421875 2 Unmodified _IPVIQIVYETL_ DDX1|p.L431Ffs*23|1|0.26|ENSG00000079785|chr2:15620291-15620292|-/T|frameshift_variant;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1 6.630372943996041 0.3233116848737396 1 TEY 3 10 21.198 0 0 1.6474 0 0 131.08969408720628 759.4782808893186 890.567974976525 0 0 0 0 0 0.5 0 0 0 TEY 1.6474 - 6 + NaN NaN 110465.9 NaN 20617 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25125 98.617 NaN 81819 35 0 17070 0.264 + 9915 IDELCIPC 8 38 453.2095991595399 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 25122 48028.68359375 0.8604249169865325 -55 1.0606689453125 3 Unmodified _IDELCIPC_ REV__ENSG00000163743|ENST00000324439|RCHY1;REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF;REV__ENST00000512567.5_1_4:76407750-76419412:-|nuORF;REV__ENST00000514589.5_1_4:76416932-76439505:-|nuORF;REV__nc|ENSG00000163743|Q96PM5-2|RCHY1;REV__nc|ENSG00000163743|Q96PM5-3|RCHY1;REV__nc|ENSG00000163743|Q96PM5-4|RCHY1;REV__nc|ENSG00000163743|Q96PM5-6|RCHY1;REV__nc|ENSG00000163743|Q96PM5-7|RCHY1;REV__nc|ENSG00000163743|Q96PM5-8|RCHY1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87920.8 NaN 20618 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25126 98.62 NaN 169050 35 0 8564.1 0.261 + 33518 YIEKSSMGKK 10 57 585.8132091834754 1169.6118654337506 2 586.3152465820312 MULTI HCD FTMS 0 0 0 25122 23505.16796875 0.5775245499542958 -7 0.122894287109375 4 Unmodified _YIEKSSMGKK_ REV__ENSG00000136731|ENST00000259253|UGGT1;REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF;REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1;REV__UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant 13.042465956692817 0.38911719078024076 1 [Y{I|L}]E{[RE]|[WV]}[YG]{I|L}K 9 -1 + 35.396 0 0 3.0263 3.0263 79.039 0 0 0 7.4511341272177205 9.710084362531582 7.4511341272177205 0.044321917401077826 0 0 2 0 0.3054621874040891 [Y{I|L}]E{[RE]|[WV]}[YG]{I|L}K;[Y{I|L}]E{[RE]|[WV]}[YG]K{I|L} 3.0263;3.0226 -;- 64 NaN NaN 114918.4 NaN 20619 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25127 98.623 NaN 54166 35 0 9808.4 0.261 -1 PCCGCCCGD 9 31 573.150390625 NaN 0 573.150390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 5 Carbamidomethyl (C) _PC(Carbamidomethyl (C))C(Carbamidomethyl (C))GC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))GD_ ENSG00000077238|ENST00000395762|IL4R;nc|ENSG00000077238|P24394-3|IL4R 0 0.29524684227089293 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.69553 0 0 590.0015923810562 257.1289156549438 847.130508036 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.69553 - 4 + NaN NaN 85530.9 NaN 20620 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25128 98.627 NaN 590890 35 0 138270 0.261 + 16806 LYEAIMRE 8 62 512.7603925290441 1023.5062321248882 2 512.7606811523438 MULTI HCD FTMS 0 0 0 25122 35640.5078125 0.47825539991644656 -7 0.122894287109375 6 Unmodified _LYEAIMRE_ ENSG00000157999|ENST00000409061|ANKRD61 37.97399986684836 0.256956040331741 1 Y{I|L}E{M(Oxidation (M))|F} 4 6 54.914 0 0 5.3653 0 0 0 468.22553430728755 468.22553430728755 29.424712680444358 0 0 0 0 1.274227503252014 1.5228787452803376 0.7302046884880937 0 Y{I|L}E{M(Oxidation (M))|F} 5.3653 - 203 + NaN NaN 176495.2 NaN 20621 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25129 98.63 NaN 62843 35 0 7775.2 0.261 -1 CAWPPCLGY 9 33 562.2393879337662 1122.4642229343324 2 562.2395629882812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))AWPPC(Carbamidomethyl (C))LGY_ ENST00000447563.5_1_7:158809599-158810334:+|nuORF 0.6014990680409731 0.3464572424761564 1 V 1 -1 6.9897 0 0 0.62271 0 0 682.165255504448 338.20911272831347 1020.3743682327615 0 0 0 0 0 0 0 0 0 V 0.62271 - 1 + NaN NaN 93567.9 NaN 20622 4505 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25131 98.635 NaN 102850 35 0 14971 0.411 + 35688 YYKYLVEL 8 57 545.7967897449356 NaN 0 545.797119140625 PEAK HCD FTMS 0 0 0 25130 30888.763671875 0.39074846280530423 1 -0.0075836181640625 1 Unmodified _YYKYLVEL_ tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1 25.399314129420986 0.3813806174882625 1 {I|L}{I|L}W{I|L}V 5 6 27.964 0 0 2.5665 0 0 205.0443108357711 257.11374841861567 462.1580592543868 0 0 0 0 0 1.3807196863200843 0 0 0 {I|L}{I|L}W{I|L}V 2.5665 - 56 + NaN NaN 121141.5 NaN 20623 4506 25130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25133 98.642 NaN 7098300 35 0 953110 0.327 + 10993 IYEPNFIFF 9 61 595.3002204512211 1188.585887969242 2 595.3009643554688 MULTI HCD FTMS 0 0 0 25132 5569835.5 0.5072650792413349 -4 0.06247711181640625 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 131.26759243768294 0.0005280990274065272 1 [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 97.162 0 0 8.1746 8.1746 89.633 0 0 0 6.116669810521543 6.116669810521543 6.116669810521543 6.116669810521543 0 2.6677353201839438 1.5228787452803376 0.9163865622122673 1.1989700043360187 + + [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};Y{I|L}EPGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YE]{I|L}PN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NP][YE]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.1746;7.66;6.7012;6.565;6.2264;6.1346;5.9424;4.753;4.6611;4.0942 +;-;-;-;-;-;-;-;-;- + 441 NaN NaN 426178.5 NaN 20624 4507 25132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25134 98.647 NaN 1960300 35 0 330200 0.261 + 16807 LYEAMAKAWE 10 89 606.2924846166009 1210.5704163000016 2 606.2916870117188 MULTI HCD FTMS 0 0 0 25132 602441.375 0.5333824786504509 -4 0.06247711181640625 2 Unmodified _LYEAMAKAWE_ ENSG00000166311|ENST00000342245|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-4|SMPD1 45.69961567697781 0.09594615698576985 1 {I|L}YEPG[QP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 7 + 76.278 0 0 6.301 6.301 84.315 0 0 0 19.318269791811105 6.23716915162025 6.23716915162025 1.5933415172585086 0 1.6989700043360187 2 0.7059771852360797 0.3054621874040891 {I|L}YEPG[QP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YEP[HA]TS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YEPG[QP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{[QG]|[NA]}P{M(Oxidation (M))|F};{I|L}YEP[HA][HT]P{M(Oxidation (M))|F};{I|L}YE{[ET]|[MV]}Q{[QG]|[NA]}P{M(Oxidation (M))|F};{I|L}YEP[KC]{[QS]|[NT]}P{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{[QG]|[NA]}M{I|L};[Y{I|L}]EPN{[QD]|[EN]|[WG]|[KD]|[RS]}W{M(Oxidation (M))|F};{I|L}YEP[KC]{[NV]|[RG]}[{M(Oxidation (M))|F}V] 6.301;6.1694;5.5439;5.1854;5.0629;5.0524;4.8833;4.5095;4.2957;4.2332 -;-;-;-;-;-;-;-;-;- 3126 + NaN NaN 388532 NaN 20625 4507 25132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25135 98.65 NaN 190690 35 0 48598 0.261 + 4883 FAFPDEFVF 9 39 559.7632240847271 1117.511895236254 2 559.7633666992188 MULTI HCD FTMS 0 0 0 25132 89214.5703125 0.1261902664423454 12 -0.21039581298828125 3 Unmodified _FAFPDEFVF_ ENSG00000123159|ENST00000393033|GIPC1;ENSG00000137960|ENST00000370759|GIPC2;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1 34.10243960390752 0.09241788333544565 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 40.445 0 0 3.6192 0 0 706.2959464532968 0 706.2959464532968 0 37.68110275043508 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.6192 + + 22 NaN NaN 110397.4 NaN 20626 4507 25132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25136 98.653 NaN 151260 35 0 18248 0.261 + 31736 VYLLTFPPL 9 44 531.8153250157012 1061.6160970982023 2 531.81494140625 MULTI HCD FTMS 0 0 0 25132 19749.423828125 0.03390010177300559 -34 0.6202468872070312 4 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 36.04419817259434 0.08350412372117409 1 {M(Oxidation (M))|F}T 2 8 31.013 0 0 2.9213 0 0 325.2007019243719 485.27659021549067 810.4772921398626 0 0 0 0 0 1.3807196863200843 0 0.7742275032520141 0 {M(Oxidation (M))|F}T 2.9213 - 23 + NaN NaN 109231.1 NaN 20627 4507 25132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25137 98.657 NaN 66333 35 0 5693.8 0.261 -1 LFLMAVSFL 9 46 528.7920532226562 NaN 0 528.7920532226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _LFLM(Oxidation (M))AVSFL_ ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B 7.910154910731844 0.25691533546754686 1 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.1359 0 0 131.09827108946916 774.3823946588499 905.4806657483191 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.1359 + + 18 + NaN NaN 98715.4 NaN 20628 4507 25132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25138 98.66 NaN 142650 35 0 9587.8 0.261 + 12469 KQRRLERRREF 11 63 525.3097421565196 1572.9073970697586 3 525.6448364257812 MULTI HCD FTMS 0 0 0 25132 9603.76171875 0.18855455260721277 -5 0.085235595703125 6 Unmodified _KQRRLERRREF_ REV__ENSG00000122786|ENST00000361675|CALD1;REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF;REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF;REV__nc|ENSG00000122786|Q05682-2|CALD1;REV__nc|ENSG00000122786|Q05682-4|CALD1;REV__nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.92848 0 0 1407.8283087902648 0 1407.8283087902648 0 0.7698776497074871 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.92848 + + 16 + NaN NaN 96822.3 NaN 20629 4507 25132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25140 98.665 NaN 474540 35 0 53687 0.327 + -1 LWCFFFFF 8 61 405.18825848692614 NaN 0 405.18804931640625 PEAK HCD FTMS 0 0 0 25139 76582.390625 0.6467019608254497 -4 0.075469970703125 1 Carbamidomethyl (C) _LWC(Carbamidomethyl (C))FFFFF_ REV__ENST00000298316.6_1_14:50361063-50361216:+|nuORF 12.531546534597751 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.86467 0 0 496.21484015082865 162.05611597232658 658.2709561231552 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.86467 + + 7 + NaN NaN 157254.6 NaN 20630 4508 25139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25142 98.671 NaN 296300 35 0 43442 0.327 + 29413 TYSLFPQMQ 9 55 557.7650610834114 NaN 0 557.7759399414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TYSLFPQMQ_ nc|ENSG00000111728|Q92185-2|ST8SIA1 12.531546534597751 0.23452071659215576 1 AD{I|L}NA{I|L}DA 8 8 48.397 0 0 4.3463 0 0 165.0571671868135 162.05587183170158 327.1130390185151 0 0 0 0 0 0 0 1.079689690656103 0 AD{I|L}NA{I|L}DA 4.3463 - 193 + NaN NaN 135503 NaN 20631 4509 25141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25143 98.676 NaN 205480 35 0 24438 0.263 + -1 LCYYVCMFF 9 52 415.8417418948811 1244.5033962848433 3 415.8421936035156 MULTI HCD FTMS 0 0 0 25141 28243.693359375 0.2811821144732079 -3 0.03705596923828125 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))YYVCMFF_ REV__ENSG00000260903|ENST00000562532|XKR7 9.38312468134398 0.279288223203164 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.5069 0 0 819.2719593732437 0 819.2719593732437 0 31.109243748081777 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.5069 - 17 NaN NaN 117941 NaN 20632 4509 25141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25144 98.679 NaN 86142 35 0 10914 0.261 + 13785 KYPSPFFVF 9 35 566.2978935444163 NaN 0 566.2977294921875 PEAK HCD FTMS 0 0 0 25141 18755.685546875 0.3460428410989555 16 -0.27520751953125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.23204487237355156 1 V 1 8 9.732 0 0 0.86079 0 0 165.0780396883959 863.4125127882678 1028.4905524766637 0 0 0 0 0 0.4247425010840047 0 0 0 + V 0.86079 + + 2 + NaN NaN 92797.1 NaN 20633 4509 25141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25145 98.683 NaN 45243 35 0 3626.1 0.261 -1 0 28 582.3534213832811 1162.692289833362 2 582.3544311523438 MULTI HCD FTMS 0 0 0 25141 65190.671875 0.18383828974906413 13 -0.2304534912109375 4 NaN NaN 1 N 1 -1 3.9794 0 0 0.34226 0 0 485.3915829015246 560.2205904596311 1045.6121733611558 0 0 0 0 0 0 0 0 0 N 0.34226 - 5 + NaN NaN 96711.3 NaN 20634 4509 25141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25146 98.686 NaN 76413 35 0 10006 0.262 + 19665 NVNKRHPF 8 31 506.2782628515865 NaN 0 506.2789001464844 PEAK HCD FTMS 0 0 0 25141 23646.9609375 0.5799262851763923 -3 0.03705596923828125 5 Unmodified _NVNKRHPF_ REV__ENSG00000134874|ENST00000376829|DZIP1;REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF;REV__ENST00000485031.5_1_13:96234490-96239991:-|nuORF;REV__nc|ENSG00000134874|Q86YF9-2|DZIP1 2.302733041254933 0.38822285293237185 1 A 1 -1 0.71334 0 0 0.07059 0 0 523.4843688654793 413.0029696100219 936.4873384755012 0 0 0 0 0 0 0 0 0 A 0.07059 - 1 + NaN NaN 97042.4 NaN 20635 4509 25141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25147 98.689 NaN 104280 35 0 8709.9 0.261 + 14094 KYYIDPPFK 9 44 585.8132091834754 1169.6118654337506 2 585.8137817382812 MULTI HCD FTMS 0 0 0 25141 54004.19921875 0.7028662246166261 -5 0.08243560791015625 6 Unmodified _KYYIDPPFK_ REV__ENSG00000166323|ENST00000393084|C11orf65;REV__nc|ENSG00000166323|Q8NCR3-2|MFI 11.494710602746466 0.2610445893512368 1 MC(Carbamidomethyl (C)){I|L}{I|L} 4 -1 28.928 0 0 2.4733 0 0 634.3632069318375 0 634.3632069318375 0 6.3033376849500655 0 0 0 0 0 0 0 MC(Carbamidomethyl (C)){I|L}{I|L} 2.4733 - 157 NaN NaN 100906.8 NaN 20636 4509 25141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25149 98.694 NaN 605930 35 0 188080 0.327 + -1 HCGLGSGTCFF 11 60 621.7555679204022 1241.4965829076043 2 621.75537109375 MULTI HCD FTMS 0 0 0 25148 350577.28125 0.7172149323504574 -1 0.02233123779296875 1 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))GLGSGTC(Carbamidomethyl (C))FF_ REV__ENSG00000283654|ENST00000637218|CIROP;REV__nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP 5.731851221503515 0.39378271418728467 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 28.392 0 0 2.2869 0 0 669.1964588849625 0 669.1964588849625 0 9.862306917666778 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2869 - 98 NaN NaN 171387 NaN 20637 4510 25148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25150 98.699 NaN 187600 35 0 24705 0.261 -1 VKSTDSCLFF 10 43 602.2899411678347 1202.5653294024694 2 602.2896728515625 MULTI HCD FTMS 0 0 0 25148 118156.234375 0.7496784471879123 -1 0.02233123779296875 2 Carbamidomethyl (C) _VKSTDSC(Carbamidomethyl (C))LFF_ ENSG00000141447|ENST00000319481|OSBPL1A;OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant 22.736283301280096 0.29844449404982915 1 E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 56.503 0 0 4.6985 0 0 290.1268788068375 0 290.1268788068375 0 47.550179335456306 0 0 0 1.774227503252014 0 0.3494850021680094 0.805462187404089 E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.6985 - 125 NaN NaN 114400.2 NaN 20638 4510 25148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25151 98.702 NaN 296090 35 0 73723 0.261 -1 DYYIWHDCT 9 49 636.7530939287917 1271.4916349243833 2 637.2573852539062 MULTI HCD FTMS 0 0 0 25148 40334.6796875 0.12834860339039816 17 -0.2817840576171875 3 Carbamidomethyl (C) _DYYIWHDC(Carbamidomethyl (C))T_ ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1;nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-6|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.G637Sfs*18|1|0.08|ENSG00000138079|chr2:44320488-44320489|-/CTCTGGAAGGCCCACC|frameshift_variant 2.0597508629832335 0.3354026079994024 1 S{I|L} 2 -1 9.464 0 0 0.74432 0 0 164.94825236100434 903.4053438775999 1068.3535962386043 0 0 0 0 0 0 0 0 0 S{I|L} 0.74432 - 7 + NaN NaN 125571.5 NaN 20639 4510 25148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25152 98.705 NaN 59503 35 0 4708.1 0.261 + 19051 NEDPSWPYFE 10 36 642.2650803900248 1282.5156078468494 2 642.2639770507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NEDPSWPYFE_ REV__ENSG00000132464|ENST00000396073|ENAM 2.735195868890462 0.4608258780945842 1 WN[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F} 5 -1 23.94 0 0 1.8667 0 0 520.216600486525 0 520.216600486525 0 14.960762528683702 0 0 0 0.9247425010840047 0 0 0 WN[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F} 1.8667 - 27 NaN NaN 105604.5 NaN 20640 4510 25148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25154 98.71 NaN 213570 35 0 17365 0.327 + 12221 KKWDLFKKFFV 11 61 495.95872205178085 1484.8543367555426 3 495.95916748046875 MULTI HCD FTMS 0 0 0 25153 109708.2265625 0.4675945288190261 36 -0.50933837890625 1 Unmodified _KKWDLFKKFFV_ tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 0.5059551277355931 0.4167017191902429 1 DV{M(Oxidation (M))|F} 3 9 20.802 0 0 1.4009 0 0 1105.6805080270383 0 1105.6805080270383 0 9.832881222565248 0 0 0 0 0 0 0 DV{M(Oxidation (M))|F} 1.4009 - 44 + NaN NaN 104987.6 NaN 20641 4511 25153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25155 98.715 NaN 77429 35 0 6910.4 0.261 -1 0 47 442.60091065281483 1324.7809025586446 3 442.60125732421875 MULTI HCD FTMS 0 0 0 25153 52012.73828125 0.2546659082112931 14 -0.23682403564453125 2 NaN NaN 1 E 1 -1 6.9897 0 0 0.52761 0 0 772.4568191619634 420.2547701471313 1192.7115893090947 0 0 0 0 0 0 0 0 0 E 0.52761 - 5 + NaN NaN 91953.7 NaN 20642 4511 25153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25156 98.718 NaN 105850 35 0 7467.9 0.261 + 12470 KQRRLERRREF 11 48 525.3097421565196 1572.9073970697586 3 525.3094482421875 MULTI HCD FTMS 0 0 0 25153 20741.056640625 0.29223203255653346 -9 0.1530914306640625 3 Unmodified _KQRRLERRREF_ REV__ENSG00000122786|ENST00000361675|CALD1;REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF;REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF;REV__nc|ENSG00000122786|Q05682-2|CALD1;REV__nc|ENSG00000122786|Q05682-4|CALD1;REV__nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 A{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.0461 0 0 1336.7913214855773 0 1336.7913214855773 0 10.969100130080562 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.0461 - 11 + NaN NaN 99277.8 NaN 20643 4511 25153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25158 98.723 NaN 365210 35 0 85478 0.327 + 6184 FPELLPLSEL 10 44 579.3262456648534 1156.6379383965068 2 579.3265991210938 MULTI HCD FTMS 0 0 0 25157 281263.3125 0.5688149453224074 -2 0.02884674072265625 1 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 45.69961567697781 0.09594615698576985 1 {I|L}[{I|L}P]SE{I|L} 6 4 45.45 0 0 3.9295 0 0 486.24690444160314 0 486.24690444160314 0 45.45039703980876 0 0 0 1.7302046884880937 0 0.4247425010840047 0 + {I|L}[{I|L}P]SE{I|L} 3.9295 + + 25 NaN NaN 156244.3 NaN 20644 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25159 98.727 NaN 429050 35 0 103070 0.264 -1 YIFEGFSMFA 10 76 409.85117456939497 1226.5316943083849 3 409.85150146484375 MULTI HCD FTMS 0 0 0 25157 276279.09375 0.9540872289231518 -2 0.02884674072265625 2 Oxidation (M) _YIFEGFSM(Oxidation (M))FA_ ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA 9.5439744041441 0.42184090036563754 1 {I|L}Y 2 -1 42.519 0 0 3.4666 0 0 0 947.3619837691539 947.3619837691539 21.347659602351143 0 0 0 0 0.3054621874040891 2 0 0 {I|L}Y 3.4666 - 37 + NaN NaN 152439.6 NaN 20645 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25160 98.731 NaN 334980 35 0 88884 0.261 + 34561 YPLIIYDVF 9 57 571.8104628233565 1141.6063727135129 2 571.8106079101562 MULTI HCD FTMS 0 0 0 25157 147849.546875 0.46703214044253877 -2 0.02884674072265625 3 Unmodified _YPLIIYDVF_ ENSG00000106049|ENST00000265395|HIBADH;ENST00000496814.1_1_7:27689076-27702407:-|nuORF 50.855029805455786 0.030374663808198754 1 RP{I|L}YDV{M(Oxidation (M))|F} 7 3 66.433 0 0 5.8192 0 0 233.15258960980037 0 233.15258960980037 0 59.44283241038235 0 0 0 2.3494850021680094 0 0.3252574989159953 0 RP{I|L}YDV{M(Oxidation (M))|F} 5.8192 - 142 + NaN NaN 134433.8 NaN 20646 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25161 98.734 NaN 69937 35 0 9154.4 0.261 + 28109 TIHFPTDYPF 10 29 619.2985073968824 1236.5824618605648 2 619.2977905273438 MULTI HCD FTMS 0 0 0 25157 41501.03125 0.323557080610672 8 -0.14929962158203125 4 Unmodified _TIHFPTDYPF_ ENSG00000078967|ENST00000222402|UBE2D4;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000131508|ENST00000398733|UBE2D2;ENST00000440899.5_1_7:43978041-43988321:+|nuORF;ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;nc|ENSG00000131508|P62837-2|UBE2D2 6.723162845929126 0.4397169348982109 1 [YV]Y 3 9 37.447 0 0 3.0283 0 0 0 808.365212675271 808.365212675271 37.447274948966935 0 0 0 0 1 1.6989700043360187 0 0 [YV]Y 3.0283 - 6 NaN NaN 90593.4 NaN 20647 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25162 98.738 NaN 80954 35 0 6061.5 0.261 + 14297 LDEYYLVFW 9 39 624.3033836072831 NaN 0 624.3040771484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LDEYYLVFW_ REV__ENSG00000147155|ENST00000495186|EBP 1.844237919475145 0.28630992268396543 1 V 1 -1 5.4846 0 0 0.43996 0 0 733.3121795960076 411.1874178522094 1144.499597448217 0 0 0 0 0 0 0 0 0 V 0.43996 + + 6 + NaN NaN 98394.3 NaN 20648 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25163 98.741 NaN 122800 35 0 26632 0.264 -1 0 38 439.25454571932227 876.4945385054446 2 439.2546081542969 MULTI HCD FTMS 0 0 0 25157 78467.046875 0.9681073793572164 2 -0.04219818115234375 6 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.52528 0 0 113.14032547857455 613.2628878229124 726.403213301487 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.52528 - 6 + NaN NaN 91519.8 NaN 20649 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25164 98.744 NaN 61673 35 0 7216 0.261 -1 QLCLAFLLVC 10 35 590.3187864086341 NaN 0 590.3174438476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _QLCLAFLLVC(Carbamidomethyl (C))_ ENSG00000174951|ENST00000645652|FUT1 4.3292370932331545 0.3364790620948225 1 PE{I|L} 3 -1 14.693 0 0 1.2466 0 0 147.07058109065184 689.3495577447874 836.4201388354393 0 0 0 0 0 0 0 0 0 PE{I|L} 1.2466 - 23 + NaN NaN 94657.9 NaN 20650 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25165 98.748 NaN 59677 35 0 6612.6 0.261 + 33196 YFCYGSMHIY 10 31 642.2650803900248 1282.5156078468494 2 642.7651977539062 MULTI HCD FTMS 0 0 0 25157 16536.08984375 0.07026596781565482 17 -0.2697601318359375 8 Unmodified _YFCYGSMHIY_ REV__NYNRIN|p.C1309Y|1|0.46|ENSG00000205978|chr14:24415675-24415675|G/A|missense_variant 3.5964929083625545 0.45626689593999237 1 WE[EP]{M(Oxidation (M))|F} 5 -1 24.208 0 0 1.8876 0 0 576.218549932207 0 576.218549932207 0 10.868193983395642 0 0 0 0.5 0 0 0 WE[EP]{M(Oxidation (M))|F} 1.8876 - 27 NaN NaN 89564.1 NaN 20651 4512 25157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25167 98.752 NaN 173030 35 0 21200 0.327 + 33768 YLFNKDIFF 9 33 603.8135212822486 1205.6124896312972 2 603.8141479492188 MULTI HCD FTMS 0 0 0 25166 70686.8125 0.5548554246598595 5 -0.08083343505859375 1 Unmodified _YLFNKDIFF_ REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1 5.230669730166228 0.3113646817964458 1 {M(Oxidation (M))|F}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 4 -1 14.693 0 0 1.2187 0 0 633.3117216643035 0 633.3117216643035 0 3.7236374744834677 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.2187 - 29 + NaN NaN 124715.7 NaN 20652 4513 25166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25168 98.757 NaN 106850 35 0 20064 0.261 -1 MIVCDNWSSF 10 45 637.7623406917724 1273.5101284503446 2 638.2632446289062 MULTI HCD FTMS 0 0 0 25166 25906.80859375 0.08366220161671448 20 -0.28338623046875 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))IVC(Carbamidomethyl (C))DNWSSF_ ENST00000331835.9_2_1:87328833-87328956:-|nuORF 2.735195868890462 0.4608258780945842 1 W 1 -1 3.9794 0 0 0.31247 0 0 519.2138770849134 565.1947725885374 1084.4086496734508 0 0 0 0 0 0 0 0 0 W 0.31247 + + 20 + NaN NaN 93001.9 NaN 20653 4513 25166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25169 98.76 NaN 95538 35 0 10027 0.261 + 17139 LYLPSFFTY 9 36 575.7936904166554 1149.5728279001107 2 575.7947998046875 MULTI HCD FTMS 0 0 0 25166 19577.166015625 0.35985677831557095 -34 0.64776611328125 3 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 34.10243960390752 0.09241788333544565 1 [Y{I|L}]{I|L} 3 6 30.942 0 0 2.6916 0 0 0 757.3187592684719 757.3187592684719 5.012262311882765 0 0 0 0 0.5 1.6989700043360187 0 0 + [Y{I|L}]{I|L} 2.6916 + + 12 NaN NaN 104920.9 NaN 20654 4513 25166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25171 98.765 NaN 7162000 35 0 951510 0.327 + 10994 IYEPNFIFF 9 84 595.3002204512211 1188.585887969242 2 595.3009033203125 MULTI HCD FTMS 0 0 0 25170 9419497 0.8578676860597618 3 -0.04850006103515625 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 131.26759243768294 0.0005280990274065272 1 [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 97.871 0 0 8.2342 8.2342 94.623 0 0 0 19.990823894397565 81.03794667124717 19.990823894397565 17.825834421237516 0 2.6677353201839438 1.5228787452803376 1.0114393726401687 1.1747425010840047 + + [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}[NP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{M(Oxidation (M))|F}[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YE]{I|L}{M(Oxidation (M))|F}[NP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NP][YE]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YE[NP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.2342;6.7345;6.6696;6.3423;5.702;5.1699;4.8426;4.7778;4.2922;4.2085 +;-;-;-;-;-;-;-;-;- + 969 NaN NaN 661666.4 NaN 20655 4514 25170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25172 98.77 NaN 406260 35 0 126580 0.261 + -1 MFEHRCEFA 9 60 621.7555679204022 1241.4965829076043 2 622.7581787109375 MULTI HCD FTMS 0 0 0 25170 94324.3984375 0.6323631129081441 3 -0.04850006103515625 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))FEHRC(Carbamidomethyl (C))EFA_ REV__A4GALT|p.R225C|1|0.3|ENSG00000128274|chr22:42693279-42693279|G/A|missense_variant 4.3292370932331545 0.3181982124262546 1 {I|L}S[KC]{I|L} 5 -1 10.713 0 0 0.86294 0 0 348.0227651549805 346.1405766961395 694.16334185112 0 0 0 0 0 0 0 0 0 {I|L}S[KC]{I|L} 0.86294 - 71 + NaN NaN 147685.5 NaN 20656 4514 25170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25173 98.773 NaN 72322 35 0 5830.9 0.261 + -1 CVHYYLFEM 9 36 639.2715454101562 NaN 0 639.2715454101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VHYYLFEM(Oxidation (M))_ REV__ENST00000572856.1_1_18:3607136-3607283:+|nuORF 2.0597508629832335 0.2852655770354268 1 W 1 -1 1.1092 0 0 0.087102 0 0 567.2107499005875 517.1940401666624 1084.40479006725 0 0 0 0 0 0 0 0 0 W 0.087102 - 2 + NaN NaN 96662.8 NaN 20657 4514 25170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25175 98.778 NaN 734940 35 0 124760 0.327 + -1 YIPDMKQPGF 10 54 606.2924846166009 1210.5704163000016 2 606.29150390625 MULTI HCD FTMS 0 0 0 25174 544449.1875 0.48203803586361255 4 -0.07470703125 1 Oxidation (M) _YIPDM(Oxidation (M))KQPGF_ REV__ENSG00000163629|ENST00000411767|PTPN13;REV__nc|ENSG00000163629|Q12923-2|PTPN13;REV__nc|ENSG00000163629|Q12923-3|PTPN13;REV__nc|ENSG00000163629|Q12923-4|PTPN13 27.628801355627647 0.2527626205058048 1 {I|L}YE 3 -1 59.253 0 0 4.8946 0 0 0 802.3545273737308 802.3545273737308 16.940745975737883 0 0 0 0 0.9247425010840047 2 0.3807196863200844 0 {I|L}YE 4.8946 - 183 + NaN NaN 193636.9 NaN 20658 4515 25174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25176 98.782 NaN 679040 35 0 125350 0.261 + 31737 VYLLTFPPL 9 47 531.8153250157012 1061.6160970982023 2 531.8154296875 MULTI HCD FTMS 0 0 0 25174 199647.609375 0.3426973027391009 -26 0.4583892822265625 2 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 106.44 0 0 10.026 10.026 96.363 0 0 0 20.87128018967597 95.46774379777631 20.87128018967597 16.505149978319906 0 2.7302046884880937 1.5228787452803376 1.2302046884880937 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L} 10.026;8.4712;8.1126;6.3475 +;-;-;- + 295 NaN NaN 189397.4 NaN 20659 4515 25174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25177 98.786 NaN 197400 35 0 53571 0.261 + 34562 YPLIIYDVF 9 36 571.8104628233565 1141.6063727135129 2 571.8106079101562 MULTI HCD FTMS 0 0 0 25174 132402.953125 0.41823891858905554 1 -0.01944732666015625 3 Unmodified _YPLIIYDVF_ ENSG00000106049|ENST00000265395|HIBADH;ENST00000496814.1_1_7:27689076-27702407:-|nuORF 42.09456458481378 0.05572955244001856 1 YDV{M(Oxidation (M))|F} 4 5 49.993 0 0 4.3792 0 0 599.3669393068236 0 599.3669393068236 0 39.02372200412145 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + YDV{M(Oxidation (M))|F} 4.3792 + + 33 NaN NaN 105892 NaN 20660 4515 25174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25178 98.789 NaN 83983 35 0 15265 0.261 + 4884 FAFPDEFVF 9 37 559.7632240847271 1117.511895236254 2 559.7637329101562 MULTI HCD FTMS 0 0 0 25174 35842.578125 0.050697822875022114 20 -0.2932586669921875 4 Unmodified _FAFPDEFVF_ ENSG00000123159|ENST00000393033|GIPC1;ENSG00000137960|ENST00000370759|GIPC2;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1 28.486842064014134 0.11819662193267319 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 39.693 0 0 3.5519 0 0 706.2993542308493 0 706.2993542308493 0 36.59379381312206 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.5519 + + 13 NaN NaN 98114 NaN 20661 4515 25174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25179 98.793 NaN 59889 35 0 6480.8 0.261 + -1 MIILLTMEAGG 11 43 582.8017823240206 NaN 0 582.8014526367188 PEAK HCD FTMS 0 0 0 25174 26913.0546875 0.8226177979965462 1 -0.01944732666015625 5 Oxidation (M) _M(Oxidation (M))IILLTMEAGG_ REV__ENSG00000176246|ENST00000315683|OR4L1;REV__OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant 17.11289562659939 0.27893181706115244 1 P{I|L}{I|L}{I|L} 4 -1 26.498 0 0 2.2773 0 0 163.0650890230259 561.1959322565061 724.2610212795321 0 0 0 0 0 0.805462187404089 0 0 0 P{I|L}{I|L}{I|L} 2.2773 - 15 + NaN NaN 98768.9 NaN 20662 4515 25174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25181 98.798 NaN 200460 35 0 21970 0.327 -1 FVMYRMGFF 9 46 405.18825848692614 NaN 0 405.18817138671875 PEAK HCD FTMS 0 0 0 25180 35992.00390625 0.3039353996427834 4 -0.0748138427734375 1 Oxidation (M) _FVM(Oxidation (M))YRMGFF_ ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 8.155526934196011 0.2557262968844962 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.67848 0 0 496.2146689740492 162.0560701959594 658.2707391700086 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.67848 + + 2 + NaN NaN 112797.8 NaN 20663 4516 25180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25182 98.802 NaN 96116 35 0 10126 0.261 + -1 GFSALLCLHD 10 40 566.7750869458944 NaN 0 566.7758178710938 PEAK HCD FTMS 0 0 0 25180 17240.33203125 0.38481847194930313 9 -0.14954376220703125 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 1 S 1 -1 16.237 0 0 1.435 0 0 840.4139301400324 201.06707178287346 1041.481001922906 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.435 + + 8 + NaN NaN 98220.9 NaN 20664 4516 25180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25183 98.806 NaN 52636 35 0 5900.2 0.261 + -1 YDFCNHLRCG 10 29 642.7665998396805 NaN 0 642.7671508789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _YDFCNHLRC(Carbamidomethyl (C))G_ REV__ENSG00000012232|ENST00000220562|EXTL3 3.5964929083625545 0.337106189561315 1 W 1 -1 6.9897 0 0 0.54457 0 0 521.2236185296483 573.1956881158811 1094.4193066455296 0 0 0 0 0 0 0 0 0 W 0.54457 - 12 + NaN NaN 90022.8 NaN 20665 4516 25180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25184 98.809 NaN 63210 35 0 7397.8 0.261 + 7726 FYLNLAYEF 9 37 590.2903565007189 NaN 0 590.291748046875 PEAK HCD FTMS 0 0 0 25180 6642.412109375 0.3567821994278753 1 -0.01621246337890625 4 Unmodified _FYLNLAYEF_ ENST00000557380.5_1_14:50318303-50318570:-|nuORF 3.5964929083625545 0.27781873954207675 1 PE 2 8 10.969 0 0 0.93072 0 0 147.01598866487353 802.4321993463499 949.4481880112235 0 0 0 0 0 0 0 0 0 PE 0.93072 - 5 + NaN NaN 91964.6 NaN 20666 4516 25180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25186 98.814 NaN 91660 35 0 12413 0.327 + -1 FELVPCSIF 9 46 556.2781446213373 1110.5417363094746 2 556.2783813476562 MULTI HCD FTMS 0 0 0 25185 59354.421875 0.19320069067763207 -11 0.17893218994140625 1 Carbamidomethyl (C) _FELVPC(Carbamidomethyl (C))SIF_ REV__ENST00000558499.2_1_15:96937553-96937652:+|nuORF 11.640296217721598 0.25978676193971967 1 DW{I|L}{M(Oxidation (M))|F} 4 -1 42.713 0 0 3.8461 0 0 531.271776267775 0 531.271776267775 0 32.25513515448309 0 0 0 1.5 0 0 0 DW{I|L}{M(Oxidation (M))|F} 3.8461 - 46 NaN NaN 115513.8 NaN 20667 4517 25185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25187 98.818 NaN 87870 35 0 6331.1 0.261 + 23411 RLKHEHIERRR 11 58 510.6343118121179 1528.8811060365538 3 510.6349792480469 MULTI HCD FTMS 0 0 0 25185 54905.88671875 0.3585339344309129 -41 0.7487869262695312 2 Unmodified _RLKHEHIERRR_ ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35 0 0.41892066650488113 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98431.1 NaN 20668 4517 25185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25188 98.822 NaN 92133 35 0 11074 0.261 + 5464 FIPMWCLFF 9 32 602.2899411678347 1202.5653294024694 2 602.7924194335938 MULTI HCD FTMS 0 0 0 25185 36477.09765625 0.2778340201427602 6 -0.1042633056640625 3 Unmodified _FIPMWCLFF_ REV__ENSG00000163394|ENST00000295589|CCKAR 14.581692164780916 0.23437375358055648 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0101 0 0 777.3331165998062 0 777.3331165998062 0 25.713337517843655 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0101 + + 20 NaN NaN 98177.8 NaN 20669 4517 25185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25189 98.825 NaN 87854 35 0 13036 0.261 + 35204 YVLGYKQTL 9 30 542.8062858654321 1083.598018797664 2 542.806396484375 MULTI HCD FTMS 0 0 0 25185 12236.5224609375 0.17718240000651592 -2 0.0356597900390625 4 Unmodified _YVLGYKQTL_ ENSG00000156482|ENST00000287038|RPL30;ENST00000429309.1_1_3:32676926-32677028:-|nuORF;ENST00000518164.5_1_8:99037863-99057595:-|nuORF 15.847184025352803 0.2234401846867398 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F} 6 5 58.461 0 0 5.3951 0 0 0 344.15888391666255 344.15888391666255 46.01342204748164 0 0 0 0 1.1549471895720984 2 0 0 [YV]{I|L}{I|L}T{M(Oxidation (M))|F} 5.3951 - 59 + NaN NaN 96057.9 NaN 20670 4517 25185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25190 98.828 NaN 54893 35 0 4062.1 0.261 + 32057 VYQIFDTFF 9 36 590.2903565007189 NaN 0 590.3195190429688 PEAK HCD FTMS 0 0 0 25185 7285.6962890625 0.391334759658538 2 -0.0390472412109375 5 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 6.2057823575117 0.2651744870083793 1 {M(Oxidation (M))|F} 1 8 7.7423 0 0 0.65692 0 0 528.2215688590564 500.2514742486938 1028.4730431077503 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 0.65692 + + 4 + NaN NaN 105010.4 NaN 20671 4517 25185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25192 98.833 NaN 270650 35 0 83917 0.327 + -1 QCQPCAGAGFF 11 44 621.7555679204022 1241.4965829076043 2 621.7554321289062 MULTI HCD FTMS 0 0 0 25191 121232.5859375 0.24801898346581772 7 -0.11382293701171875 1 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))QPC(Carbamidomethyl (C))AGAGFF_ REV__ENSG00000171773|ENST00000301944|NXNL1 2.9952420565917617 0.40578455234410343 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 22.396 0 0 1.8039 0 0 816.2607289044937 0 816.2607289044937 0 7.703037561203841 0 0 0 0.7614393726401688 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8039 - 54 NaN NaN 128285.5 NaN 20672 4518 25191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25193 98.838 NaN 82174 35 0 7392 0.261 + 13491 KYPENFFLL 9 41 585.8132091834754 1169.6118654337506 2 585.8138427734375 MULTI HCD FTMS 0 0 0 25191 35019.0546875 0.45577401598245576 4 -0.06906890869140625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.93 0 0 2.6445 0 0 778.3680897443375 0 778.3680897443375 0 9.960762528683702 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6445 + + 18 NaN NaN 99605.7 NaN 20673 4518 25191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25194 98.841 NaN 89498 35 0 11095 0.261 + 13786 KYPSPFFVF 9 41 566.2978935444163 NaN 0 566.2977905273438 PEAK HCD FTMS 0 0 0 25191 35053.53125 0.6467384790593314 25 -0.3441009521484375 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 12.240655878213236 0.2359303321180293 1 {I|L} 1 9 6.7827 0 0 0.59993 0 0 475.24274646207624 539.2333468072874 1014.4760932693637 0 0 0 0 0 0.5 0 0 0 {I|L} 0.59993 - 27 + NaN NaN 109097.1 NaN 20674 4518 25191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25195 98.845 NaN 66789 35 0 16495 0.262 -1 WGCHGTSPRLW 11 33 452.88062071957785 NaN 0 452.8702087402344 PEAK HCD FTMS 0 0 0 25191 7213.951171875 0.2746167009620655 -24 0.42815399169921875 4 Carbamidomethyl (C) _WGC(Carbamidomethyl (C))HGTSPRLW_ ENST00000497869.5_1_1:1146937-1148774:-|nuORF 0.5059551277355931 0.3406848944787997 1 P 1 -1 3.9794 0 0 0.44032 0 0 529.850949835837 273.8155916803344 803.6665415161715 0 0 0 0 0 0 0 0 0 P 0.44032 + + 3 + NaN NaN 97236.3 NaN 20675 4518 25191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25196 98.848 NaN 40422 35 0 3823.2 0.261 + 8100 GKYRVYHNQ 9 31 582.8010064111247 NaN 0 582.8548583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _GKYRVYHNQ_ ENSG00000171634|ENST00000306378|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF;nc|ENSG00000171634|Q12830-4|BPTF;nc|ENSG00000171634|Q12830|BPTF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93331.5 NaN 20676 4518 25191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25198 98.853 NaN 206810 35 0 38105 0.327 + 6185 FPELLPLSEL 10 44 579.3262456648534 1156.6379383965068 2 579.3267211914062 MULTI HCD FTMS 0 0 0 25197 98921.6015625 0.2000548343253207 5 -0.08470916748046875 1 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 32.78568957990786 0.20801173326193015 1 {I|L}[{I|L}P]SE{I|L} 6 4 44.213 0 0 3.8226 0 0 486.2460529389279 0 486.2460529389279 0 37.22357194224834 0 0 0 1.305462187404089 0 0.4247425010840047 0 + {I|L}[{I|L}P]SE{I|L} 3.8226 + + 16 NaN NaN 114470.5 NaN 20677 4519 25197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25199 98.857 NaN 93916 35 0 4761.3 0.261 + -1 VRKYKEKKLMF 11 56 495.95872205178085 1484.8543367555426 3 495.9589538574219 MULTI HCD FTMS 0 0 0 25197 85448.4140625 0.36419521273662675 44 -0.6419296264648438 2 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 0.4545168274142398 0.41692731010159206 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.98354 0 0 1319.7756146869863 0 1319.7756146869863 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.98354 + + 7 + NaN NaN 92844.2 NaN 20678 4519 25197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25200 98.861 NaN 58734 35 0 6169.8 0.261 + 7107 FRNMGERDQR 10 31 436.87929686588353 NaN 0 436.8789978027344 PEAK HCD FTMS 0 0 0 25197 22441.740234375 0.6255362300946065 1 -0.01955413818359375 3 Unmodified _FRNMGERDQR_ ENST00000459993.5_1_3:56657437-56657518:-|nuORF 1.5922808571145555 0.3388215173004697 1 N 1 9 2.4743 0 0 0.28383 0 0 435.7960560346983 318.88569055728755 754.6817465919859 0 0 0 0 0 0 0 0 0 + N 0.28383 + + 1 + NaN NaN 106001.3 NaN 20679 4519 25197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25201 98.864 NaN 67696 35 0 14836 0.261 -1 PDVQDCPECTL 11 30 638.7649536132812 NaN 0 638.7649536132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _PDVQDCPEC(Carbamidomethyl (C))TL_ ENSG00000135346|ENST00000627148|CGA 0.9622753412299311 0.33939044544643376 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98800.7 NaN 20680 4519 25197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25202 98.867 NaN 189630 35 0 39619 0.263 + 33764 YLFKNNPE 8 54 512.7606201171875 NaN 0 512.7606201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLFKNNPE_ ENSG00000140057|ENST00000267584|AK7 16.942295170755138 0.3865212393897457 1 {I|L}E 2 6 18.628 0 0 1.82 0 0 163.06228476860343 615.2935274713499 778.3558122399534 0 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {I|L}E 1.82 - 22 + NaN NaN 116542.9 NaN 20681 4519 25197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25204 98.872 NaN 737220 35 0 310950 0.327 -1 0 56 636.3189047341003 1270.6232565350006 2 636.3189086914062 MULTI HCD FTMS 0 0 0 25203 139897.390625 0.3122975596624126 -21 0.3703155517578125 1 NaN NaN 1 G{I|L}{I|L}S{M(Oxidation (M))|F} 5 -1 51.242 0 0 4.0328 0 0 735.3209706037125 0 735.3209706037125 0 31.576447055154514 0 0 0 1.3807196863200843 0 0.4247425010840047 0 G{I|L}{I|L}S{M(Oxidation (M))|F} 4.0328 - 46 NaN NaN 200383.5 NaN 20682 4520 25203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25205 98.877 NaN 40750 35 0 4810.7 0.261 -1 LEMSFAVPFF 10 25 602.2899411678347 1202.5653294024694 2 602.2891845703125 MULTI HCD FTMS 0 0 0 25203 22096.693359375 0.14019924427405994 9 -0.12046051025390625 2 Oxidation (M) _LEM(Oxidation (M))SFAVPFF_ AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant;ENSG00000178522|ENST00000322937|AMBN;nc|ENSG00000178522|Q9NP70-2|AMBN 6.723162845929126 0.4397169348982109 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1595 0 0 890.4182621679136 0 890.4182621679136 0 25.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1595 + + 3 NaN NaN 85629.4 NaN 20683 4520 25203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25206 98.88 NaN 75966 35 0 4640.6 0.261 + 23723 RQRREFREKRL 11 41 525.3097421565196 1572.9073970697586 3 525.3103637695312 MULTI HCD FTMS 0 0 0 25203 70974.6171875 1 0 0 3 Unmodified _RQRREFREKRL_ ENSG00000104859|ENST00000221455|CLASRP;nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP 0.09484139111097674 0.41850472438158626 1 {M(Oxidation (M))|F} 1 10 14.604 0 0 0.92848 0 0 1407.828598707257 0 1407.828598707257 0 14.604093769761874 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.92848 + + 3 + NaN NaN 97300.1 NaN 20684 4520 25203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25207 98.884 NaN 204750 35 0 35323 0.262 + -1 LYCFCIFVF 9 58 404.52524995946993 1210.5539204786098 3 404.52569580078125 MULTI HCD FTMS 0 0 0 25203 14250.1376953125 0.14081325702316702 9 -0.12046051025390625 4 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))FCIFVF_ REV__ENSG00000203933|ENST00000370540|CXorf66 9.38312468134398 0.279288223203164 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2064 0 0 1045.4751984100535 0 1045.4751984100535 0 14.326507130512718 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2064 + + 6 + NaN NaN 123964.1 NaN 20685 4520 25203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25208 98.887 NaN 142400 35 0 27403 0.261 + 11028 IYESDRDGA 9 37 513.2316904818073 NaN 0 512.760498046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IYESDRDGA_ ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1 3.944395688203298 0.27613285122220627 1 E{I|L} 2 8 10.261 0 0 1.0016 0 0 164.00459095330262 615.2935885065061 779.2981794598088 0 0 0 0 0 0 0 0.3807196863200844 0 E{I|L} 1.0016 - 15 + NaN NaN 106353.3 NaN 20686 4520 25203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25209 98.89 NaN 48803 35 0 4580.4 0.261 + 12137 KKKKKKKKKSF 11 39 469.3289078737723 NaN 0 469.3288269042969 PEAK HCD FTMS 0 0 0 25203 15641.1220703125 0.6707255523992292 -2 0.039093017578125 6 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90978.9 NaN 20687 4520 25203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25212 98.902 NaN 2311100 35 0 302140 0.327 + 10995 IYEPNFIFF 9 73 595.3002204512211 1188.585887969242 2 595.300537109375 MULTI HCD FTMS 0 0 0 25211 1427608.75 0.1300174961530503 11 -0.13348388671875 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 114.6490535036381 0.0021834323520089267 1 [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 106.11 0 0 8.9275 8.9275 95.634 0 0 0 19.990823894397565 86.6470593548587 19.990823894397565 17.825834421237516 0 2.8494850021680094 1.5228787452803376 0.3807196863200844 1.1747425010840047 + + [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]EPGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{M(Oxidation (M))|F}[NP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]EPGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YE]{I|L}PN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YE]{I|L}PGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.9275;7.4277;7.1644;7.1022;6.8171;6.3605;6.022;5.7688;5.6025;5.3392 +;-;-;-;-;-;-;-;-;- + 805 NaN NaN 439911.7 NaN 20688 4522 25211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25213 98.906 NaN 935970 35 0 190970 0.261 + 31738 VYLLTFPPL 9 52 531.8153250157012 1061.6160970982023 2 531.8156127929688 MULTI HCD FTMS 0 0 0 25211 412571 0.7081826290381724 -19 0.3224029541015625 2 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 106.44 0 0 10.026 10.026 91.718 0 0 0 20.87128018967597 89.35850004969453 20.87128018967597 6.131382658072312 0 2.774227503252014 1.5228787452803376 1.1861818737241734 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}T{I|L}{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}T{I|L}P{M(Oxidation (M))|F}P{I|L};[YV]{I|L}TP{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}P{I|L}T{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L};[YV]{I|L}{I|L}PT{M(Oxidation (M))|F}P{I|L};[YV][VP]{I|L}[YV]P{I|L} 10.026;9.4484;8.4712;8.1126;7.8937;7.1806;6.4524;6.389;5.7394;3.2392 +;-;-;-;-;-;-;-;-;- + 489 NaN NaN 229525.2 NaN 20689 4522 25211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25214 98.91 NaN 188410 35 0 34281 0.261 -1 IYPVMGSLGQM 11 33 606.2924846166009 1210.5704163000016 2 606.2913818359375 MULTI HCD FTMS 0 0 0 25211 149468.796875 0.13233493027946205 11 -0.13348388671875 3 Oxidation (M) _IYPVM(Oxidation (M))GSLGQM_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|213|3|anti-sense 19.361941925380144 0.2883811769592959 1 {I|L}YE 3 -1 56.682 0 0 4.6823 0 0 0 802.3551362815966 802.3551362815966 21.237125054200234 0 0 0 0 1 1.6989700043360187 0.3494850021680094 0 {I|L}YE 4.6823 - 18 + NaN NaN 119169.1 NaN 20690 4522 25211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25215 98.913 NaN 310880 35 0 53479 0.261 -1 SMYYNAFTDF 10 44 637.7583269785995 NaN 0 637.7583618164062 PEAK HCD FTMS 0 0 0 25211 6768.970703125 0.325325068053108 2 -0.03517913818359375 4 Oxidation (M) _SM(Oxidation (M))YYNAFTDF_ tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 1.4819007175156935 0.33891598740166873 1 S{I|L} 2 -1 10.969 0 0 0.86133 0 0 165.9528043624651 904.4100435846311 1070.3628479470963 0 0 0 0 0 0 0 0 0 S{I|L} 0.86133 - 21 + NaN NaN 128710.8 NaN 20691 4522 25211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25217 98.918 NaN 130860 35 0 14618 0.327 -1 MIYPACFVL 9 41 586.2798258951703 1170.5450988571406 2 586.2807006835938 MULTI HCD FTMS 0 0 0 25216 47008.16796875 0.20218944614691053 -13 0.22380828857421875 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 1 {M(Oxidation (M))|F}V{I|L} 3 -1 35.005 0 0 2.9905 0 0 793.3130360334 0 793.3130360334 0 14.035984316004217 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}V{I|L} 2.9905 + + 23 NaN NaN 117210.4 NaN 20692 4523 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25218 98.922 NaN 146630 35 0 17172 0.261 + 25742 SKVRKSRSW 9 58 567.3295797997762 1132.6446066663523 2 567.2693481445312 MULTI HCD FTMS 0 0 0 25216 37135.55859375 0.8162718009852237 -1 0.01568603515625 2 Unmodified _SKVRKSRSW_ ENSG00000084731|ENST00000264712|KIF3C 3.944395688203298 0.32111559684428237 1 SW 2 7 16.198 0 0 1.4301 0 0 841.5225740249836 0 841.5225740249836 0 9.208187539523749 0 0 0 0 0 0 0 + SW 1.4301 + + 36 + NaN NaN 114476.8 NaN 20693 4523 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25219 98.926 NaN 60739 35 0 5190.9 0.261 + 14577 LFLDLPKSV 9 43 516.3098961194287 NaN 0 516.31005859375 PEAK HCD FTMS 0 0 0 25216 39551.5859375 1 0 0 3 Unmodified _LFLDLPKSV_ ENSG00000136943|ENST00000259470|CTSV 1.844237919475145 0.28630992268396543 1 P 1 8 5.4846 0 0 0.53217 0 0 332.20321401444477 598.3274630182249 930.5306770326697 0 0 0 0 0 0 0 0 0 + P 0.53217 + + 3 + NaN NaN 115995.2 NaN 20694 4523 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25220 98.929 NaN 133400 35 0 18490 0.261 + 5923 FPDLVEGLVL 10 33 551.3131698643455 1100.6117867954908 2 551.3134765625 MULTI HCD FTMS 0 0 0 25216 18439.8671875 0.2851319973553778 -13 0.22380828857421875 4 Unmodified _FPDLVEGLVL_ ENSG00000103034|ENST00000570248|NDRG4;ENST00000561720.5_1_16:58529427-58541082:+|nuORF;ENST00000565981.5_1_16:58539993-58546041:+|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-4|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4 13.042465956692817 0.38911719078024076 1 E{[VA]|[{I|L}G]}V{I|L} 5 5 31.466 0 0 2.8589 0 0 571.3006386230984 0 571.3006386230984 0 31.46591250700361 0 0 0 0.9247425010840047 0 0 0 + E{[VA]|[{I|L}G]}V{I|L} 2.8589 + + 6 NaN NaN 103225.5 NaN 20695 4523 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25221 98.933 NaN 77233 35 0 10305 0.261 + 23311 RIRGSQLL 8 45 471.7956902629935 NaN 0 471.7957458496094 PEAK HCD FTMS 0 0 0 25216 14925.17578125 0.6199093899396355 2 -0.0290679931640625 5 Unmodified _RIRGSQLL_ REV__ENSG00000124749|ENST00000244728|COL21A1;REV__nc|ENSG00000124749|Q96P44-3|COL21A1 2.577480529830294 0.38822285293237185 1 K 1 -1 2.7642 0 0 0.29357 0 0 489.3718237859495 321.0817965143188 810.4536203002683 0 0 0 0 0 0 0 0 0 K 0.29357 - 2 + NaN NaN 107862.3 NaN 20696 4523 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25223 98.938 NaN 266250 35 0 24108 0.327 + 26361 SSLLSGRISTL 11 61 567.3295797997762 1132.6446066663523 2 567.3291015625 MULTI HCD FTMS 0 0 0 25222 45494.109375 1 0 0 1 Unmodified _SSLLSGRISTL_ ENSG00000136636|ENST00000259154|KCTD3;ENSG00000160410|ENST00000291842|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant 2.9952420565917617 0.40578455234410343 1 {I|L}{M(Oxidation (M))|F} 2 10 18.583 0 0 1.6407 0 0 854.4813203888117 0 854.4813203888117 0 3.634993639681312 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6407 - 207 + NaN NaN 122316.9 NaN 20697 4524 25222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25224 98.942 NaN 115990 35 0 14640 0.261 + 25898 SNIYFRILP 9 39 561.8178860229629 NaN 0 561.8170776367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SNIYFRILP_ tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1 1.844237919475145 0.28630992268396543 1 V 1 9 6.9897 0 0 0.62318 0 0 342.2377685603439 677.2944429986936 1019.5322115590375 0 0 0 0 0 0 0 0 0 V 0.62318 - 4 + NaN NaN 98264.4 NaN 20698 4524 25222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25226 98.947 NaN 267920 35 0 46210 0.327 + -1 RCRSCLLF 8 43 556.2781446213373 1110.5417363094746 2 556.2783203125 MULTI HCD FTMS 0 0 0 25225 270795.03125 0.881447167992839 -3 0.0447540283203125 1 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))RSC(Carbamidomethyl (C))LLF_ REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF 21.74664581756881 0.4337896562907935 1 HDW{I|L}{M(Oxidation (M))|F} 5 -1 51.81 0 0 4.6653 0 0 394.220018455275 0 394.220018455275 0 41.35274404843592 0 0 0 1.5 0 0.4247425010840047 0 HDW{I|L}{M(Oxidation (M))|F} 4.6653 - 65 NaN NaN 121404.1 NaN 20699 4525 25225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25227 98.951 NaN 126030 35 0 6711.1 0.261 + -1 KRRQLCVRKLM 11 59 510.6343118121179 1528.8811060365538 3 510.9684753417969 MULTI HCD FTMS 0 0 0 25225 39797.6640625 0.16268854123073134 -35 0.604522705078125 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.09484139111097674 0.41850472438158626 1 M 1 -1 4.6041 0 0 0.30114 0 0 917.5547033039351 477.2509859674438 1394.805689271379 0 0 0 0 0 0 0 0 0 M 0.30114 + + 2 + NaN NaN 115257.4 NaN 20700 4525 25225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25228 98.955 NaN 50414 35 0 6308 0.261 + -1 FYPRFDCC 8 30 582.7337862929916 NaN 0 582.85498046875 PEAK HCD FTMS 0 0 0 25225 13121.7646484375 0.45355675836240494 3 -0.0363311767578125 3 2 Carbamidomethyl (C) _FYPRFDC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000205593|ENST00000413817|DENND6B;REV__ENST00000495607.5_1_22:50752441-50754573:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101660.1 NaN 20701 4525 25225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25229 98.958 NaN 51927 35 0 4933.1 0.261 + 12178 KKLKITVIYV 10 32 602.90234375 NaN 0 602.90234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _KKLKITVIYV_ tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1 0.45834013312273997 0.33979201340002624 1 S 1 10 6.9897 0 0 0.58097 0 0 623.7959151349625 489.2716158502563 1113.0675309852188 0 0 0 0 0 0 0 0 0 S 0.58097 - 4 + NaN NaN 101662.7 NaN 20702 4525 25225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25230 98.961 NaN 30729 35 0 4687.5 0.261 -1 PACCCHCCEP 10 23 618.6903076171875 NaN 0 618.6903076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 3 Carbamidomethyl (C) _PAC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))HCCEP_ ENSG00000204887|ENST00000377747|KRTAP1-4 0 0.34018428902965525 1 {I|L} 1 -1 6.9897 0 0 0.5707 0 0 137.224357517775 971.4312838190061 1108.6556413367812 0 0 0 0 0 0 0 0 0 {I|L} 0.5707 - 1 + NaN NaN 89432.2 NaN 20703 4525 25225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25232 98.966 NaN 102120 35 0 12622 0.327 + 35198 YVLFLRHH 8 38 542.8064258354028 1083.5982987376055 2 542.8070068359375 MULTI HCD FTMS 0 0 0 25231 27151.998046875 0.27158403610976684 -4 0.0640716552734375 1 Unmodified _YVLFLRHH_ ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF 14.581692164780916 0.48650662947107914 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F} 6 4 58.461 0 0 5.3951 0 0 0 344.1588533990844 344.1588533990844 37.26280941356464 0 0 0 0 1.305462187404089 1.6989700043360187 0 0 [YV]{I|L}{I|L}T{M(Oxidation (M))|F} 5.3951 - 83 + NaN NaN 102979.1 NaN 20704 4526 25231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25233 98.971 NaN 170700 35 0 33998 0.261 + 28964 TYAPLFSLPSF 11 42 621.8240276167346 1241.6335023002691 2 621.8234252929688 MULTI HCD FTMS 0 0 0 25231 19502.392578125 0.0141273340178515 43 -0.6452865600585938 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 22.65808497894818 0.2596617744649775 1 [WY]{I|L}S{M(Oxidation (M))|F} 5 7 34.208 0 0 2.7551 0 0 0 542.2613619440061 542.2613619440061 26.760912590556813 0 0 0 0 1.5 0 0 0 [WY]{I|L}S{M(Oxidation (M))|F} 2.7551 - 44 + NaN NaN 110359.8 NaN 20705 4526 25231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25235 98.976 NaN 171900 35 0 25982 0.411 -1 YECHQCGKAF 10 56 621.7555679204022 1241.4965829076043 2 622.25732421875 MULTI HCD FTMS 0 0 0 25234 29188.486328125 0.08451089457006897 16 -0.2013702392578125 1 Carbamidomethyl (C) _YEC(Carbamidomethyl (C))HQCGKAF_ ENSG00000141040|ENST00000395825|ZNF287;ENSG00000275111|ENST00000614034|ZNF2;nc|ENSG00000275111|Q9BSG1-3|ZNF2;nc|ENSG00000275111|Q9BSG1-4|ZNF2 3.5964929083625545 0.45626689593999237 1 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 8 -1 32.089 0 0 2.5847 0 0 0 346.00226869117245 346.00226869117245 5.740312677277185 0 0 0 0 0 1.5228787452803376 0.3494850021680094 0 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 2.5847 - 309 NaN NaN 144041.9 NaN 20706 4527 25234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25237 98.983 NaN 762360 35 0 227490 0.327 -1 0 59 636.3189047341003 1270.6232565350006 2 636.3192138671875 MULTI HCD FTMS 0 0 0 25236 379901.5625 0.84806678917059 -13 0.205322265625 1 NaN NaN 1 G{I|L}{I|L}S{M(Oxidation (M))|F} 5 -1 49.993 0 0 3.9345 0 0 735.322200456465 0 735.322200456465 0 38.49144313929287 0 0 0 1.3807196863200843 0 0.4247425010840047 0 G{I|L}{I|L}S{M(Oxidation (M))|F} 3.9345 - 210 NaN NaN 201262.9 NaN 20707 4528 25236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25238 98.988 NaN 109500 35 0 12341 0.262 + 13787 KYPSPFFVF 9 45 566.2978935444163 NaN 0 566.2979736328125 PEAK HCD FTMS 0 0 0 25236 29054.318359375 0.5360528596059148 35 -0.5113143920898438 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.90604991867851 0.22786006501039813 1 NPV 3 7 20.93 0 0 1.8512 0 0 655.3380833761388 162.05588709049064 817.3939704666294 0 0 0 0 0 1.4247425010840047 0 0 0 NPV 1.8512 - 24 + NaN NaN 99983.7 NaN 20708 4528 25236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25240 98.993 NaN 540840 35 0 228360 0.327 -1 0 51 636.3189047341003 1270.6232565350006 2 636.3192138671875 MULTI HCD FTMS 0 0 0 25239 217734.03125 0.4860548600016784 -12 0.1790618896484375 1 NaN NaN 1 M{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 6 -1 41.956 0 0 3.302 0 0 604.296190330275 0 604.296190330275 0 30.52887198244136 0 0 0 1.3807196863200843 0 0.4247425010840047 0 M{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 3.302 - 30 NaN NaN 159857.4 NaN 20709 4529 25239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25241 98.997 NaN 55731 35 0 7601.2 0.264 + -1 AAHPHLGE 8 30 437.2146108617251 NaN 0 437.2143249511719 PEAK HCD FTMS 0 0 0 25239 28130.8046875 0.3661805808947688 -30 0.49077606201171875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AAHPHLGE_ REV__ENST00000327979.6_1_20:49225168-49225207:-|nuORF 0.7936320650641473 0.38822285293237185 1 N 1 -1 0.71334 0 0 0.081766 0 0 436.4730011650533 318.8855379693969 755.3585391344502 0 0 0 0 0 0 0 0 0 N 0.081766 - 1 + NaN NaN 92689.2 NaN 20710 4529 25239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25242 99.001 NaN 52982 35 0 13891 0.261 + -1 FMGNIEVDKKC 11 28 452.88062071957785 NaN 0 452.8702392578125 PEAK HCD FTMS 0 0 0 25239 14866.51171875 0.5659301408822666 -13 0.19527435302734375 3 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))GNIEVDKKC(Carbamidomethyl (C))_ REV__ENSG00000160868|ENST00000651514|CYP3A4;REV__ENSG00000160870|ENST00000336374|CYP3A7;REV__ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;REV__nc|ENSG00000160870|P24462-2|CYP3A7 0.4545168274142398 0.3408308101233591 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.60687 0 0 400.79137952333696 352.8626803033813 753.6540598267183 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60687 + + 1 + NaN NaN 85735.8 NaN 20711 4529 25239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25243 99.004 NaN 48465 35 0 6784.1 0.261 + -1 LMTCCLFCT 9 32 582.7337862929916 NaN 0 582.7342529296875 PEAK HCD FTMS 0 0 0 25239 14063.7568359375 0.48611693105351367 6 -0.0785369873046875 4 2 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))TC(Carbamidomethyl (C))C(Carbamidomethyl (C))LFCT_ REV__ENST00000528947.5_2_11:7535100-7569685:+|nuORF 0.5247636613948944 0.2927039108006614 1 A 1 -1 4.6041 0 0 0.39573 0 0 582.1068415295393 507.29584680728755 1089.402688336827 0 0 0 0 0 0 0 0 0 A 0.39573 - 1 + NaN NaN 96355.6 NaN 20712 4529 25239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25244 99.007 NaN 62948 35 0 5923.1 0.261 + 27633 TAISLFYEL 9 42 528.7842004747744 NaN 0 528.7843017578125 PEAK HCD FTMS 0 0 0 25239 6518.1044921875 0.4084699196051197 -1 0.0093994140625 5 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 13.90604991867851 0.22786006501039813 1 EY{M(Oxidation (M))|F} 3 8 23.188 0 0 2.1967 0 0 131.09286276419863 482.2628267877563 613.3556895519549 0 0 0 0 0 1 0 0 0 EY{M(Oxidation (M))|F} 2.1967 - 18 + NaN NaN 93333.2 NaN 20713 4529 25239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25247 99.019 NaN 29995 35 0 2376.3 0.412 + 11878 KFDGKDFRW 9 37 599.8031035970475 NaN 0 599.8578491210938 PEAK HCD FTMS 0 0 0 25246 15558.1728515625 1 0 0 1 Unmodified _KFDGKDFRW_ ENSG00000039123|ENST00000230640|MTREX 1.844237919475145 0.28630992268396543 1 {M(Oxidation (M))|F} 1 8 3.0989 0 0 0.25876 0 0 525.800590883745 521.6908663385374 1047.4914572222824 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.25876 + + 1 + NaN NaN 99090.2 NaN 20714 4531 25246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25249 99.026 NaN 1308300 35 0 138630 0.327 + 10996 IYEPNFIFF 9 57 595.3002204512211 1188.585887969242 2 595.3003540039062 MULTI HCD FTMS 0 0 0 25248 354976.21875 0.032328969093074325 21 -0.2686920166015625 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 96.11092074494114 0.00436583732602279 1 [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 85.97 0 0 7.2329 7.2329 85.691 0 0 0 0.7648373010427179 0.7648373010427179 0.7648373010427179 0.7648373010427179 0 2.5924778212679485 1.5228787452803376 0.6989700043360187 0.8494850021680094 + + [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}EPGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.2329;7.1686;6.0736;5.6543;4.6015 +;-;-;-;- + 196 NaN NaN 288877.5 NaN 20715 4532 25248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25250 99.031 NaN 612300 35 0 116870 0.261 + 31739 VYLLTFPPL 9 48 531.8153250157012 1061.6160970982023 2 531.8155517578125 MULTI HCD FTMS 0 0 0 25248 284759.46875 0.48879273924461075 -9 0.10840606689453125 2 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 103.43 0 0 9.7424 9.7424 96.159 0 0 0 18.741436528314566 87.22865638833312 18.741436528314566 16.505149978319906 0 2.7302046884880937 1.3979400086720375 1.2302046884880937 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L};[YV]{I|L}VVYPP{I|L} 9.7424;8.1876;7.829;6.0639;5.855 +;-;-;-;- + 306 NaN NaN 174879.1 NaN 20716 4532 25248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25252 99.036 NaN 188330 35 0 28514 0.327 -1 MIYPACFVL 9 43 586.2798258951703 1170.5450988571406 2 586.2802124023438 MULTI HCD FTMS 0 0 0 25251 134832.34375 0.5799348939449271 -3 0.0236663818359375 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 -1 46.186 0 0 3.9457 0 0 646.2450428693375 0 646.2450428693375 0 28.226825097560422 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.9457 - 32 NaN NaN 111516.1 NaN 20717 4533 25251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25253 99.04 NaN 160690 35 0 25881 0.261 + 16860 LYETCPLKMN 10 45 606.2924846166009 1210.5704163000016 2 606.2901611328125 MULTI HCD FTMS 0 0 0 25251 98716.1796875 0.08740017334404039 22 -0.30181121826171875 2 Unmodified _LYETCPLKMN_ REV__ENSG00000180113|ENST00000316081|TDRD6;REV__nc|ENSG00000180113|O60522-2|TDRD6 20.41453444215458 0.3201613495159799 1 {I|L}YE{[ET]|[MV]}Q{I|L} 7 -1 58.064 0 0 4.7964 0 0 0 331.1069429986938 331.1069429986938 24.876750844102773 0 0 0 0 1 1.6989700043360187 0.3494850021680094 0 {I|L}YE{[ET]|[MV]}Q{I|L} 4.7964 - 68 + NaN NaN 113139.3 NaN 20718 4533 25251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25254 99.044 NaN 103770 35 0 17407 0.262 + 32462 WECSLMIF 8 37 514.73254525861 1027.45053758402 2 514.7323608398438 MULTI HCD FTMS 0 0 0 25251 22935.22265625 0.08338827299032202 -10 0.1177978515625 3 Unmodified _WECSLMIF_ REV__ENSG00000283703|ENST00000686984|VSIG10L2;REV__nc|ENSG00000283703|P0DP72|VSIG10L2 5.230669730166228 0.5342319408533849 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5275 0 0 749.2877165142394 0 749.2877165142394 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5275 + + 2 NaN NaN 106079.2 NaN 20719 4533 25251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25255 99.047 NaN 75550 35 0 13940 0.261 + 14404 LEKRQKRRWYL 11 40 525.9783141500728 NaN 0 525.978271484375 PEAK HCD FTMS 0 0 0 25251 22970.37890625 0.6556037660204597 3 -0.05251312255859375 4 Unmodified _LEKRQKRRWYL_ REV__ENSG00000154134|ENST00000397801|ROBO3;REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 0.0732635311334299 0.34191231592972665 1 A 1 -1 6.9897 0 0 0.66572 0 0 132.50343849996347 843.3779390924436 975.881377592407 0 0 0 0 0 0 0 0 0 A 0.66572 - 5 + NaN NaN 98355.4 NaN 20720 4533 25251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25256 99.05 NaN 61174 35 0 10918 0.261 + 25538 SFLPTSPLLGF 11 30 589.8264707600204 1177.6383885868406 2 590.3280029296875 MULTI HCD FTMS 0 0 0 25251 20279.2734375 0.16197706914985824 -8 0.0887298583984375 5 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 16.149105407346934 0.31637472687818013 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 8 26.427 0 0 2.244 0 0 0 827.4313627902187 827.4313627902187 23.327731244245342 0 0 0 0 0.5 1.3979400086720375 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.244 + + 16 NaN NaN 102595 NaN 20721 4533 25251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25258 99.055 NaN 174590 35 0 27010 0.326 + 16861 LYETCPLKMN 10 46 606.2924846166009 1210.5704163000016 2 606.2924194335938 MULTI HCD FTMS 0 0 0 25257 60215.078125 0.053312519616440755 23 -0.3316192626953125 1 Unmodified _LYETCPLKMN_ REV__ENSG00000180113|ENST00000316081|TDRD6;REV__nc|ENSG00000180113|O60522-2|TDRD6 20.41453444215458 0.3201613495159799 1 {I|L}YD{M(Oxidation (M))|F}PQ{I|L} 7 -1 59.39 0 0 4.906 0 0 0 331.10675989322505 331.10675989322505 28.460244700585022 0 0 0 0 0.4247425010840047 2 0.3494850021680094 0 {I|L}YD{M(Oxidation (M))|F}PQ{I|L} 4.906 - 95 + NaN NaN 109392.3 NaN 20722 4534 25257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25259 99.06 NaN 176490 35 0 13594 0.261 + 31303 VWLPASVLF 9 51 516.2996116727647 1030.5846704123294 2 516.3103637695312 MULTI HCD FTMS 0 0 0 25257 29871.140625 0.45441419286551227 -7 0.07915496826171875 2 Unmodified _VWLPASVLF_ ENSG00000134490|ENST00000383233|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;nc|ENSG00000134490|Q24JQ0-2|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241 28.486842064014134 0.11819662193267319 1 RV{I|L}{M(Oxidation (M))|F} 4 6 39.725 0 0 3.8546 0 0 497.2546559064469 0 497.2546559064469 0 32.735097166722156 0 0 0 1.3807196863200843 0 0 0 RV{I|L}{M(Oxidation (M))|F} 3.8546 - 21 NaN NaN 106041.5 NaN 20723 4534 25257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25260 99.063 NaN 146340 35 0 31902 0.261 + 25539 SFLPTSPLLGF 11 38 589.8264707600204 1177.6383885868406 2 589.8277587890625 MULTI HCD FTMS 0 0 0 25257 48618.13671875 0.25315709989083907 -7 0.07915496826171875 3 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 32.78568957990786 0.18341249061758555 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]S 6 5 34.895 0 0 2.9631 0 0 0 542.3016139436414 542.3016139436414 24.83288122256525 0 0 0 0 1 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]S 2.9631 + + 45 NaN NaN 109614.1 NaN 20724 4534 25257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25261 99.066 NaN 94252 35 0 16566 0.261 + 25318 SCLKCFPLVL 10 39 561.8075136090223 NaN 0 561.8187866210938 PEAK HCD FTMS 0 0 0 25257 13093.6787109375 0.7610628304834569 1 -0.016204833984375 4 Unmodified _SCLKCFPLVL_ ENST00000560975.5_1_15:63335715-63353895:+|nuORF 2.9952420565917617 0.3376207769591857 1 G 1 10 11.237 0 0 1.0019 0 0 440.3001335639445 621.2672213190061 1061.5673548829507 0 0 0 0 0 0.4247425010840047 0 0 0 G 1.0019 - 5 + NaN NaN 97912.5 NaN 20725 4534 25257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25263 99.071 NaN 130850 35 0 19113 0.376 + -1 RCRSCLLF 8 37 556.2781446213373 1110.5417363094746 2 556.2783813476562 MULTI HCD FTMS 0 0 0 25262 123111.9453125 0.40073362882943364 7 -0.0866241455078125 1 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))RSC(Carbamidomethyl (C))LLF_ REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF 10.823927491677226 0.514154816617796 1 SW{I|L}{M(Oxidation (M))|F} 4 -1 43.928 0 0 3.9555 0 0 559.2662220685562 0 559.2662220685562 0 33.470325397914564 0 0 0 1.5 0 0 0 SW{I|L}{M(Oxidation (M))|F} 3.9555 - 29 NaN NaN 98586.8 NaN 20726 4535 25262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25264 99.077 NaN 130700 35 0 26281 0.268 + -1 STLLPCSSAL 10 36 524.7728742770659 NaN 0 524.7728271484375 PEAK HCD FTMS 0 0 0 25262 23465.365234375 0.20783215022370435 -4 0.05208587646484375 2 Carbamidomethyl (C) _STLLPC(Carbamidomethyl (C))SSAL_ REV__ENST00000429422.5_2_3:47892891-47893008:-|nuORF 6.2057823575117 0.3348729994311477 1 A 1 -1 11.99 0 0 1.1446 0 0 131.09511006273482 842.3761661914228 973.4712762541576 0 0 0 0 0 0.5 0 0 0 A 1.1446 + + 5 + NaN NaN 105311.9 NaN 20727 4535 25262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25265 99.08 NaN 110350 35 0 12495 0.261 + 28965 TYAPLFSLPSF 11 47 621.8246016288165 NaN 0 622.2568969726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 22.65808497894818 0.23586030009909842 1 S{I|L} 2 9 24.776 0 0 1.9955 0 0 692.3543027878922 346.14118372135005 1038.4954865092423 0 0 0 0 0 1.3807196863200843 0 0 0 + S{I|L} 1.9955 + + 31 + NaN NaN 103349.7 NaN 20728 4535 25262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25266 99.083 NaN 110630 35 0 8844.2 0.261 + 25743 SKVRKSRSW 9 45 567.3295797997762 1132.6446066663523 2 567.3292846679688 MULTI HCD FTMS 0 0 0 25262 16755.21875 0.3682942468856717 11 -0.1411895751953125 4 Unmodified _SKVRKSRSW_ ENSG00000084731|ENST00000264712|KIF3C 3.944395688203298 0.32111559684428237 1 SW 2 7 20.969 0 0 1.8513 0 0 841.5231905059992 0 841.5231905059992 0 0 0 0 0 0 0 0 0 + SW 1.8513 + + 25 + NaN NaN 106077.6 NaN 20729 4535 25262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25268 99.088 NaN 113960 35 0 11211 0.326 + -1 KRRQLCVRKLM 11 44 510.6343118121179 1528.8811060365538 3 510.6343994140625 MULTI HCD FTMS 0 0 0 25267 70918.8984375 0.4630984617833355 -22 0.3230743408203125 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 97451.2 NaN 20730 4536 25267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25269 99.093 NaN 84566 35 0 19044 0.261 -1 PPEMVGMI 8 37 453.2095991595399 NaN 0 453.2099304199219 PEAK HCD FTMS 0 0 0 25267 37921.671875 0.679359685371085 -24 0.36527252197265625 2 2 Oxidation (M) _PPEM(Oxidation (M))VGM(Oxidation (M))I_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94094.4 NaN 20731 4536 25267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25271 99.098 NaN 137310 35 0 16177 0.411 -1 0 58 542.8064258354028 1083.5982987376055 2 542.8065185546875 MULTI HCD FTMS 0 0 0 25270 49274.140625 0.49285765134761084 7 -0.09235382080078125 1 NaN NaN 1 VY{I|L}{I|L}T{M(Oxidation (M))|F}P 7 -1 77.583 0 0 7.1598 0 0 0 247.1065615289672 247.1065615289672 26.845507394672552 0 0 0 0 1.7273473230428982 2 0 0 VY{I|L}{I|L}T{M(Oxidation (M))|F}P 7.1598 - 497 + NaN NaN 120342 NaN 20732 4537 25270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25273 99.105 NaN 96964 35 0 8801.3 0.327 + 32872 WYGKHVPVF 9 46 566.7991760751496 NaN 0 566.7990112304688 PEAK HCD FTMS 0 0 0 25272 17858.37109375 0.32060963295356626 25 -0.3893890380859375 1 Unmodified _WYGKHVPVF_ REV__tr|U7SUY6|U7SUY6_FUSNUCobalt/nickeltransportproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01052PE=4SV=1 4.75600775471527 0.27219989241163056 1 T 1 -1 7.7866 0 0 0.68811 0 0 547.7870595704179 479.7265719049438 1027.5136314753618 0 0 0 0 0 0.3807196863200844 0 0 0 T 0.68811 - 13 + NaN NaN 96899.8 NaN 20733 4538 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25274 99.11 NaN 72062 35 0 8344.2 0.261 + 4409 EYFEFSEFF 9 33 622.7598650249539 NaN 0 622.7593994140625 PEAK HCD FTMS 0 0 0 25272 13906.4091796875 0.5164611399719156 8 -0.10720062255859375 2 Unmodified _EYFEFSEFF_ ENSG00000133704|ENST00000256079|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;nc|ENSG00000133704|O15397-2|IPO8 7.289230182591677 0.2599242500475609 1 {I|L}S{M(Oxidation (M))|F}R{I|L} 5 8 19.464 0 0 1.5652 0 0 350.02972653252647 274.08307825260005 624.1128047851265 0 0 0 0 0 0 0 0 0 {I|L}S{M(Oxidation (M))|F}R{I|L} 1.5652 - 40 + NaN NaN 90585.1 NaN 20734 4538 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25275 99.113 NaN 32529 35 0 4838.7 0.261 -1 0 22 547.2512333810339 546.2439569144339 1 547.2518920898438 MULTI HCD FTMS 0 0 0 25272 19051.89453125 0.06585932470873704 -22 0.30780029296875 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92527 NaN 20735 4538 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25276 99.116 NaN 61213 35 0 5473.5 0.261 -1 0 45 493.3997858431259 NaN 0 493.6177978515625 PEAK HCD FTMS 0 0 0 25272 4720.55908203125 0.3676790445833953 -3 0.03398895263671875 4 NaN NaN 1 R 1 -1 3.9794 0 0 0.40409 0 0 491.9688699266831 333.68927942447505 825.6581493511582 0 0 0 0 0 0 0 0 0 R 0.40409 - 2 + NaN NaN 92268.4 NaN 20736 4538 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25278 99.121 NaN 1004800 35 0 192410 0.326 -1 0 50 636.3189047341003 1270.6232565350006 2 636.8206787109375 MULTI HCD FTMS 0 0 0 25277 247281.125 0.7320956134192741 -13 0.1549530029296875 1 NaN NaN 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EG{I|L}{I|L}S 10 -1 71.208 0 0 5.6042 0 0 0 162.0558600434221 162.0558600434221 59.10697445813754 0 0 0 0 1.3807196863200843 1.5228787452803376 1.579689690656103 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EG{I|L}{I|L}S 5.6042 - 220 NaN NaN 235991.7 NaN 20737 4539 25277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25279 99.126 NaN 79230 35 0 12836 0.261 + -1 QYSICAHFCG 10 28 621.7555679204022 1241.4965829076043 2 621.757080078125 MULTI HCD FTMS 0 0 0 25277 18981.505859375 0.038832577491332954 26 -0.4089813232421875 2 2 Carbamidomethyl (C) _QYSIC(Carbamidomethyl (C))AHFC(Carbamidomethyl (C))G_ REV__AREL1|p.I514Tfs*3|1|0.07|ENSG00000119682|chr14:74670819-74670829|TGCTTTGCAGA/-|frameshift_variant;REV__ENSG00000119682|ENST00000356357|AREL1;REV__ENST00000469797.5_1_14:75137455-75152321:-|nuORF;REV__ENST00000557401.5_1_14:75130603-75152321:-|nuORF;REV__nc|ENSG00000119682|O15033-2|AREL1 0.45834013312273997 0.47287763746706196 1 {I|L}S{M(Oxidation (M))|F} 3 -1 11.682 0 0 0.941 0 0 349.0276630851418 542.2617891900999 891.2894522752417 0 0 0 0 0 0 0 0 0 {I|L}S{M(Oxidation (M))|F} 0.941 - 24 + NaN NaN 97700.7 NaN 20738 4539 25277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25281 99.131 NaN 63529 35 0 11698 0.326 + 28966 TYAPLFSLPSF 11 25 621.8246016288165 NaN 0 621.8240966796875 PEAK HCD FTMS 0 0 0 25280 23265.69921875 0.5116187596840893 1 -0.019378662109375 1 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 22.65808497894818 0.23586030009909842 1 {M(Oxidation (M))|F}S{I|L} 3 8 28.94 0 0 2.3308 0 0 545.2848100918142 346.14081751041255 891.4256276022268 0 0 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}S{I|L} 2.3308 + + 26 + NaN NaN 94909.2 NaN 20739 4540 25280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25282 99.135 NaN 70198 35 0 11328 0.261 + 15721 LPEYLPFVL 9 29 545.8127422494925 1089.610931565785 2 545.8128662109375 MULTI HCD FTMS 0 0 0 25280 28109.513671875 0.01663493261470779 -12 0.14752197265625 2 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 16.942295170755138 0.21397866736869717 1 V{I|L} 2 7 25.217 0 0 2.3143 0 0 859.447069236525 0 859.447069236525 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.3143 + + 8 NaN NaN 93616.1 NaN 20740 4540 25280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25283 99.139 NaN 120250 35 0 12407 0.261 + 28659 TRWLVALSW 9 46 566.3208918139923 1130.6272306947844 2 566.2994995117188 MULTI HCD FTMS 0 0 0 25280 14581.2470703125 0.3202952718340203 -13 0.15494537353515625 3 Unmodified _TRWLVALSW_ ENSG00000169006|ENST00000306928|NTSR2 4.3292370932331545 0.3181982124262546 1 {I|L}PV{M(Oxidation (M))|F} 4 8 21.146 0 0 1.8703 0 0 656.3435525715407 0 656.3435525715407 0 3.187587626244124 0 0 0 0 0 0 0 {I|L}PV{M(Oxidation (M))|F} 1.8703 - 104 + NaN NaN 97341.6 NaN 20741 4540 25280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25284 99.142 NaN 34363 35 0 5736.6 0.261 -1 FSIHFFKMK 9 24 600.8176327688826 1199.6207126045651 2 600.817138671875 MULTI HCD FTMS 0 0 0 25280 10859.736328125 0.41097942303365453 -1 0.00958251953125 4 Oxidation (M) _FSIHFFKM(Oxidation (M))K_ ENST00000282268.7_1_5:82649095-82649191:+|nuORF 10.823927491677226 0.26684000660059787 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 34.705 0 0 2.893 0 0 0 849.4129203167845 849.4129203167845 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.893 + + 3 + NaN NaN 86037.8 NaN 20742 4540 25280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25285 99.145 NaN 40804 35 0 4447.6 0.261 -1 QPCRLQDH 8 30 527.2468340748386 NaN 0 527.2914428710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _QPC(Carbamidomethyl (C))RLQDH_ ENST00000268802.9_1_16:69776052-69776238:-|nuORF 0.6903765706972694 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.66412 0 0 285.0609766440146 651.3148897760374 936.375866420052 0 0 0 0 0 0 0 0 0 {I|L} 0.66412 + + 1 + NaN NaN 87647.1 NaN 20743 4540 25280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25287 99.15 NaN 77750 35 0 7317.8 0.412 + -1 RCPPASVS 8 51 437.2146108617251 NaN 0 437.2147216796875 PEAK HCD FTMS 0 0 0 25286 25356.474609375 0.3300669392521939 -18 0.2322998046875 1 Carbamidomethyl (C) _RC(Carbamidomethyl (C))PPASVS_ REV__nc|ENSG00000029534|P16157-14|ANK1;REV__nc|ENSG00000029534|P16157-15|ANK1 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104756.5 NaN 20744 4541 25286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25289 99.158 NaN 673700 35 0 131780 0.327 + 31740 VYLLTFPPL 9 43 531.8153250157012 1061.6160970982023 2 531.8155517578125 MULTI HCD FTMS 0 0 0 25288 356252.75 0.6115117376089904 1 -0.01938629150390625 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 101.72198241140316 0.004218805956062179 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P] 9 0 + 89.447 0 0 8.4256 8.4256 94.709 0 0 0 14.119543704721593 7.147642715192504 7.147642715192504 16.505149978319906 0 2.774227503252014 1.3979400086720375 1.1861818737241734 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P];[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}{I|L}TP{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}PT{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}PV[YV][{I|L}P] 8.4256;6.8708;6.5122;5.3576;4.999;4.7886 +;-;-;-;-;- + 240 NaN NaN 190672.1 NaN 20745 4542 25288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25290 99.162 NaN 1022200 35 0 107920 0.261 + 10997 IYEPNFIFF 9 48 595.3002204512211 1188.585887969242 2 595.3002319335938 MULTI HCD FTMS 0 0 0 25288 338427.4375 0.030821811685619694 31 -0.54132080078125 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 71.92227651296345 0.008466197542043549 1 [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 72.531 0 0 6.1023 6.1023 93.504 0 0 0 19.990823894397565 65.5416747850277 19.990823894397565 72.53137482838788 0 2.1237125054200234 1.5228787452803376 0 0.8494850021680094 + + [Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1023 + + 82 NaN NaN 238469.2 NaN 20746 4542 25288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25291 99.166 NaN 133300 35 0 14456 0.261 -1 MIYPACFVL 9 37 586.2798258951703 1170.5450988571406 2 586.2799072265625 MULTI HCD FTMS 0 0 0 25288 114925.0625 0.4943105791895843 6 -0.07073974609375 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 -1 41.938 0 0 3.5828 0 0 646.2449818341812 0 646.2449818341812 0 28.1259189508755 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.5828 - 18 NaN NaN 97458.4 NaN 20747 4542 25288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25292 99.169 NaN 96118 35 0 9220.8 0.261 -1 0 31 647.3935003923635 646.3862239257635 1 647.3939819335938 MULTI HCD FTMS 0 0 0 25288 45889.09765625 0.2423032936276568 46 -0.7654876708984375 4 NaN NaN 1 M 1 -1 5.4846 0 0 0.84849 0 0 90.05359560720724 422.27048669986567 512.3240823070729 0 0 0 0 0 0 0 0 0 M 0.84849 - 3 + NaN NaN 98844.8 NaN 20748 4542 25288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25293 99.172 NaN 64876 35 0 16683 0.264 -1 YPEMEILWLM 10 35 452.88062071957785 NaN 0 452.8702697753906 PEAK HCD FTMS 0 0 0 25288 26269.1640625 1 0 0 5 2 Oxidation (M) _YPEM(Oxidation (M))EILWLM(Oxidation (M))_ ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11 0.13989180515190558 0.34006456103295546 1 P 1 -1 3.4949 0 0 0.38671 0 0 469.88573987489946 333.79035364322505 803.6760935181245 0 0 0 0 0 0 0 0 0 P 0.38671 + + 2 + NaN NaN 105010.8 NaN 20749 4542 25288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25295 99.177 NaN 529410 35 0 112360 0.327 -1 WMGTCLLF 8 41 514.73254525861 1027.45053758402 2 514.7328491210938 MULTI HCD FTMS 0 0 0 25294 275041.34375 1 0 0 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WM(Oxidation (M))GTCLLF_ ENSG00000160310|ENST00000355680|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-4|PRMT2;nc|ENSG00000160310|P55345-7|PRMT2;PRMT2|p.M222I|1|0.14|ENSG00000160310|chr21:46658756-46658756|G/C|missense_variant 34.18733598223924 0.30560024141787767 1 T{I|L}P{I|L}{M(Oxidation (M))|F} 5 -1 47.959 0 0 4.6677 0 0 438.09959871858865 0 438.09959871858865 0 35.127881306118454 0 0 0 1 0 0 0 T{I|L}P{I|L}{M(Oxidation (M))|F} 4.6677 - 69 + NaN NaN 163000.1 NaN 20750 4543 25294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25296 99.182 NaN 86194 35 0 11563 0.261 + 33555 YILAVHSDFF 10 33 606.311446614327 NaN 0 606.2904663085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YILAVHSDFF_ ENSG00000005700|ENST00000306270|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK 10.823927491677226 0.33092050725491123 1 YE 2 9 10.969 0 0 0.90608 0 0 113.1307534808039 802.3548217342185 915.4855752150224 0 0 0 0 0 0 0 0 0 YE 0.90608 - 8 + NaN NaN 94748.4 NaN 20751 4543 25294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25297 99.185 NaN 41670 35 0 4925.4 0.261 + 25828 SLSRHFSQRS 10 31 602.8155481306932 NaN 0 602.8155517578125 PEAK HCD FTMS 0 0 0 25294 5757.080078125 0.36604164265816796 1 -0.01287078857421875 3 Unmodified _SLSRHFSQRS_ REV__CON__Q9D312 2.9952420565917617 0.3376207769591857 1 A 1 -1 0.48455 0 0 0.040258 0 0 619.3207192088488 510.2357882135375 1129.5565074223864 0 0 0 0 0 0 0 0 0 A 0.040258 - 2 + NaN NaN 91798.4 NaN 20752 4543 25294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25299 99.19 NaN 264060 35 0 55803 0.327 + 25540 SFLPTSPLLGF 11 43 589.8264707600204 1177.6383885868406 2 589.82666015625 MULTI HCD FTMS 0 0 0 25298 69033.453125 0.359460686238831 3 -0.02936553955078125 1 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 75.76082778847304 0.009743817708848341 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PTS[{I|L}P]{I|L}G{M(Oxidation (M))|F} 11 0 + 88.506 0 0 7.5155 7.5155 95.095 0 0 0 24.357285695614365 79.04162016654641 24.357285695614365 39.305234507957884 0 1.7059771852360797 1.6989700043360187 0.8494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PTS[{I|L}P]{I|L}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PT[PG]{I|L}{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 7.5155;4.1779 +;- + 194 NaN NaN 127145.5 NaN 20753 4544 25298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25300 99.195 NaN 30350 35 0 4897 0.261 + 24248 RYFLPPYTF 9 23 602.3134247408524 NaN 0 602.3145141601562 PEAK HCD FTMS 0 0 0 25298 15346.951171875 0.6413341113274291 -12 0.16381072998046875 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 3.5964929083625545 0.27781873954207675 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99323.3 NaN 20754 4544 25298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25302 99.2 NaN 123470 35 0 23093 0.327 + 13492 KYPENFFLL 9 39 585.8132948421918 1169.6120367511835 2 585.8138427734375 MULTI HCD FTMS 0 0 0 25301 34291.4765625 0.5229307891624535 -7 0.09445953369140625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 7.608950283845883 0.29333554423920943 1 {I|L}{I|L} 2 7 19.464 0 0 1.6641 0 0 925.4347450435697 0 925.4347450435697 0 3.266062568876716 0 0 0 0 0 0 0 + {I|L}{I|L} 1.6641 + + 14 NaN NaN 129745.6 NaN 20755 4545 25301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25303 99.204 NaN 127610 35 0 21833 0.261 + 20496 PCSVLFDALF 10 45 556.2781446213373 1110.5417363094746 2 556.2788696289062 MULTI HCD FTMS 0 0 0 25301 38977.39453125 0.12687276375315648 17 -0.27918243408203125 2 Unmodified _PCSVLFDALF_ REV__ENST00000473016.1_1_2:74129666-74129852:+|nuORF 10.073929032068715 0.4168838835836452 1 {M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F} 4 -1 44.68 0 0 4.0233 0 0 499.25425917793126 0 499.25425917793126 0 29.463950151760656 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F} 4.0233 - 56 NaN NaN 121927.7 NaN 20756 4545 25301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25304 99.208 NaN 76217 35 0 9663.9 0.261 + 27634 TAISLFYEL 9 42 528.7843375336688 NaN 0 528.7844848632812 PEAK HCD FTMS 0 0 0 25301 24466.44921875 0.7671443458906855 3 -0.0289154052734375 3 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 24.020572477871973 0.16041128140741606 1 EY{M(Oxidation (M))|F} 3 8 29.693 0 0 2.813 0 0 131.09008918408352 482.2612703912719 613.3513595753554 0 0 0 0 0 1.5 0 0 0 EY{M(Oxidation (M))|F} 2.813 - 41 + NaN NaN 94279.1 NaN 20757 4545 25301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25306 99.213 NaN 145690 35 0 7831.1 0.327 + -1 KRRQLCVRKLM 11 61 510.6343118121179 1528.8811060365538 3 510.63446044921875 MULTI HCD FTMS 0 0 0 25305 126921.6796875 0.8287950874200078 -12 0.1573944091796875 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 1 C 1 -1 3.0989 0 0 0.20269 0 0 1055.6636510578412 367.1965773550718 1422.8602284129129 0 0 0 0 0 0 0 0 0 C 0.20269 + + 6 + NaN NaN 121735 NaN 20758 4546 25305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25308 99.219 NaN 75001 35 0 4804.5 0.327 + -1 TLRMTFDRTM 10 44 644.3129623072592 NaN 0 644.3342895507812 PEAK HCD FTMS 0 0 0 25307 6680.521484375 1 0 0 1 Oxidation (M) _TLRMTFDRTM(Oxidation (M))_ REV__ENST00000367833.6_1_1:168165857-168168217:+|nuORF 8.745405648335112 0.33269943387702366 1 T{I|L}{I|L}N 4 -1 26.67 0 0 2.0729 0 0 165.0377804394164 677.2933443658811 842.3311248052976 0 0 0 0 0 0 0 0 0.7742275032520141 T{I|L}{I|L}N 2.0729 - 47 + NaN NaN 95415.9 NaN 20759 4547 25307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25309 99.224 NaN 26496 35 0 3439.2 0.261 + 16695 LWYLSEKQM 9 29 599.302001953125 NaN 0 599.302001953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LWYLSEKQM_ REV__ENSG00000133056|ENST00000684373|PIK3C2B 0.6014990680409731 0.29233206172879045 1 D 1 -1 0.9691 0 0 0.080989 0 0 650.2623119123062 428.2793367975219 1078.5416487098282 0 0 0 0 0 0 0 0 0 D 0.080989 - 2 + NaN NaN 94617.7 NaN 20760 4547 25307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25311 99.229 NaN 141410 35 0 25633 0.327 + 15999 LPQVPDSPIF 10 45 556.8037619488332 1111.5929709644663 2 556.804443359375 MULTI HCD FTMS 0 0 0 25310 67643.234375 0.26624823415164556 -4 0.038482666015625 1 Unmodified _LPQVPDSPIF_ ENSG00000154914|ENST00000285199|USP43;nc|ENSG00000154914|Q70EL4-2|USP43;nc|ENSG00000154914|Q70EL4-3|USP43;nc|ENSG00000154914|Q70EL4-4|USP43 13.90604991867851 0.3810395177745597 1 {I|L}PEY{I|L} 5 7 36.766 0 0 3.3075 0 0 0 493.24195235589804 493.24195235589804 17.469165662315685 0 0 0 0 0.5 0 0.3807196863200844 0 {I|L}PEY{I|L} 3.3075 - 62 + NaN NaN 108442.3 NaN 20761 4548 25310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25312 99.233 NaN 84859 35 0 8101.9 0.261 + -1 GFSALLCLHD 10 38 566.7756717154663 1131.5367904977325 2 567.278076171875 MULTI HCD FTMS 0 0 0 25310 28261.466796875 0.6541054546733426 -20 0.24530029296875 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.42334543440173333 1 SW 2 -1 26.766 0 0 2.3655 0 0 840.4147949730145 0 840.4147949730145 0 7.302046884880937 0 0 0 0.8807196863200843 0 0 0 SW 2.3655 - 20 NaN NaN 104785.8 NaN 20762 4548 25310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25313 99.236 NaN 84873 35 0 14383 0.261 + 7324 FVAEFSVPLL 10 45 561.3158707325199 NaN 0 561.3157958984375 PEAK HCD FTMS 0 0 0 25310 19214.564453125 0.6497927904976958 -4 0.038482666015625 3 Unmodified _FVAEFSVPLL_ ENSG00000169777|ENST00000382492|TAS2R1 10.073929032068715 0.33156240198919784 1 V 1 9 16.237 0 0 1.4489 0 0 341.23233004133994 677.2954805963499 1018.5278106376898 0 0 0 0 0 0.9247425010840047 0 0 0 + V 1.4489 + + 7 + NaN NaN 104113.1 NaN 20763 4548 25310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25315 99.241 NaN 69309 35 0 4915.2 0.411 + 33727 YLDLKKEF 8 53 528.2922973632812 NaN 0 528.2922973632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YLDLKKEF_ tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1 7.289230182591677 0.38822285293237185 1 {I|L} 1 7 5.4846 0 0 0.52007 0 0 358.1119603426842 580.3498184467412 938.4617787894254 0 0 0 0 0 0 0 0 0 + {I|L} 0.52007 + + 13 + NaN NaN 116979.6 NaN 20764 4549 25314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25317 99.249 NaN 500170 35 0 113690 0.327 + 16652 LWFSSPSTISF 11 47 636.3189047341003 1270.6232565350006 2 636.319091796875 MULTI HCD FTMS 0 0 0 25316 264631.5 0.5907456264236791 9 -0.18018341064453125 1 Unmodified _LWFSSPSTISF_ REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5 21.799462835604743 0.267142977351036 1 E{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 6 -1 51.401 0 0 4.0453 0 0 606.2801380841812 0 606.2801380841812 0 40.43182501400722 0 0 0 1.3252574989159953 0 1.274227503252014 0 E{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 4.0453 - 33 NaN NaN 174339 NaN 20765 4550 25316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25318 99.253 NaN 635890 35 0 72283 0.262 + 15835 LPILFIDQL 9 64 536.3257756123425 1070.6369982914848 2 536.326171875 MULTI HCD FTMS 0 0 0 25316 137403.390625 0.6418573258838185 -2 0.020355224609375 2 Unmodified _LPILFIDQL_ ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L 38.175570920033316 0.07371992880350783 1 {I|L}{M(Oxidation (M))|F}{I|L}DQ{I|L} 6 3 53.136 0 0 4.963 0 0 323.22053725410314 0 323.22053725410314 0 44.55259398656281 0 0 0 1.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L}DQ{I|L} 4.963 + + 72 NaN NaN 193553.8 NaN 20766 4550 25316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25319 99.257 NaN 139750 35 0 39625 0.261 + 31721 VYLFLHRH 8 44 542.8064258354028 1083.5982987376055 2 542.8070678710938 MULTI HCD FTMS 0 0 0 25316 30322.203125 0.3032935658808902 20 -0.38520050048828125 3 Unmodified _VYLFLHRH_ SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|45|1|anti-sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|56|1|anti-sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|50|1|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|53|2|anti-sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|50|1|anti-sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|49|1|anti-sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|62|2|anti-sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|74|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|35|2|anti-sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|66|3|anti-sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|73|3|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|48|1|anti-sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|40|1|anti-sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|72|3|anti-sense 19.438996006549623 0.45076845602799126 1 VY{I|L}{I|L}T{M(Oxidation (M))|F} 6 4 65.61 0 0 6.0549 0 0 0 344.15830408267817 344.15830408267817 65.61033795144553 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 VY{I|L}{I|L}T{M(Oxidation (M))|F} 6.0549 - 61 + NaN NaN 104497.9 NaN 20767 4550 25316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25320 99.26 NaN 67390 35 0 18334 0.262 + 18948 NAHDSSFK 8 31 453.2095991595399 NaN 0 453.2097473144531 PEAK HCD FTMS 0 0 0 25316 32960.81640625 0.5904868840470684 -10 0.118133544921875 4 Unmodified _NAHDSSFK_ ENST00000382361.7_1_7:5646078-5646261:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87516.4 NaN 20768 4550 25316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25322 99.265 NaN 1111300 35 0 251120 0.327 + 15722 LPEYLPFVL 9 43 545.8127422494925 1089.610931565785 2 545.81298828125 MULTI HCD FTMS 0 0 0 25321 644423.875 0.38136368565706386 -1 0.0160675048828125 1 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 42.09456458481378 0.05572955244001856 1 {I|L}P{M(Oxidation (M))|F}V{I|L} 5 4 54.068 0 0 4.9621 0 0 502.24351699043126 0 502.24351699043126 0 48.58349385648225 0 0 0 1.8494850021680094 0 0 0 + {I|L}P{M(Oxidation (M))|F}V{I|L} 4.9621 + + 81 NaN NaN 245698.2 NaN 20769 4551 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25323 99.27 NaN 610290 35 0 95743 0.261 + 28318 TMFGEFILL 9 52 535.7831640460527 1069.5517751589052 2 535.7833251953125 MULTI HCD FTMS 0 0 0 25321 249825.921875 0.22631209518525228 -9 0.1071624755859375 2 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 21.74664581756881 0.17247014374749275 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 35.706 0 0 3.3384 0 0 565.2219105451187 0 565.2219105451187 0 15.873278429480422 0 0 0 1.066901560044258 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.3384 + + 53 NaN NaN 187813.8 NaN 20770 4551 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25324 99.273 NaN 147590 35 0 55896 0.261 -1 0 41 542.2956420033006 541.2883655367006 1 542.296142578125 MULTI HCD FTMS 0 0 0 25321 42538.94140625 0.2820794688249753 -9 0.1071624755859375 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 108069 NaN 20771 4551 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25325 99.276 NaN 172820 35 0 14685 0.261 + -1 GFSALLCLHD 10 48 566.7747664284595 NaN 0 566.7740478515625 PEAK HCD FTMS 0 0 0 25321 6744.5654296875 0.19241633731908542 15 -0.28484344482421875 4 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 13.042465956692817 0.3290217458104555 1 S 1 -1 14.732 0 0 1.3019 0 0 840.4132280700065 201.06672083072502 1041.4799489007316 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.3019 + + 95 + NaN NaN 109422.1 NaN 20772 4551 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25326 99.28 NaN 70338 35 0 5203.2 0.261 + 28967 TYAPLFSLPSF 11 33 621.8241607000947 NaN 0 621.8236083984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 14.405379775768559 0.2999620844666639 1 S{I|L} 2 9 23.711 0 0 1.9097 0 0 692.3525317499956 346.1394442193969 1038.4919759693926 0 0 0 0 0 1.4247425010840047 0 0 0 + S{I|L} 1.9097 + + 21 + NaN NaN 88458.9 NaN 20773 4551 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25327 99.283 NaN 104540 35 0 10335 0.261 + -1 SMAIVMLICM 10 40 572.2685632726767 1142.5225736121533 2 572.2689208984375 MULTI HCD FTMS 0 0 0 25321 36412.34765625 0.41625045614660566 -1 0.0160675048828125 6 2 Oxidation (M) _SM(Oxidation (M))AIVMLICM(Oxidation (M))_ REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;REV__ENSG00000141837|ENST00000360228|CACNA1A;REV__nc|ENSG00000141837|O00555-2|CACNA1A;REV__nc|ENSG00000141837|O00555-3|CACNA1A;REV__nc|ENSG00000141837|O00555-4|CACNA1A;REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__nc|ENSG00000141837|O00555-6|CACNA1A 6.2057823575117 0.44245551207394906 1 {I|L}C{M(Oxidation (M))|F} 3 -1 20.177 0 0 1.766 0 0 761.3753529279312 0 761.3753529279312 0 2.2184874961635614 0 0 0 0 0 0 0 {I|L}C{M(Oxidation (M))|F} 1.766 + + 6 NaN NaN 112559.1 NaN 20774 4551 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25329 99.288 NaN 111360 35 0 18574 0.326 -1 0 41 508.2522183830539 507.2449419164539 1 508.2521057128906 MULTI HCD FTMS 0 0 0 25328 59347.90625 0.8630301438407809 9 -0.183807373046875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 115251.6 NaN 20775 4552 25328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25331 99.295 NaN 616390 35 0 121500 0.327 + 31741 VYLLTFPPL 9 45 531.8153250157012 1061.6160970982023 2 531.815673828125 MULTI HCD FTMS 0 0 0 25330 368196.03125 0.6320125103607527 12 -0.23522186279296875 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 101.72198241140316 0.004218805956062179 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P] 9 0 + 89.447 0 0 8.4256 8.4256 94.709 0 0 0 15.880456295278407 7.147642715192504 7.147642715192504 16.505149978319906 0 2.7302046884880937 1.3979400086720375 1.2302046884880937 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P];[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}{I|L}TP{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}PT{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}PV[YV][{I|L}P] 8.4256;6.8708;6.5122;5.1917;4.8331;4.7471 +;-;-;-;-;- + 213 NaN NaN 181739.9 NaN 20776 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25332 99.299 NaN 366220 35 0 36561 0.261 + 10998 IYEPNFIFF 9 50 595.3002204512211 1188.585887969242 2 595.3002319335938 MULTI HCD FTMS 0 0 0 25330 232843.328125 0.02120588467866677 42 -0.793853759765625 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 56.17704186161178 0.022929533404884107 1 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 69.86 0 0 5.8776 5.8776 93.097 0 0 0 18.741436528314566 62.870696829342165 18.741436528314566 69.86039687270235 0 1.805462187404089 1.3979400086720375 0 0.8494850021680094 + + [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.8776 + + 44 NaN NaN 137862.9 NaN 20777 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25333 99.303 NaN 229660 35 0 31116 0.261 -1 WMGTCLLF 8 39 514.73254525861 1027.45053758402 2 514.7328491210938 MULTI HCD FTMS 0 0 0 25330 174248.0625 0.6335340720934796 10 -0.199615478515625 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WM(Oxidation (M))GTCLLF_ ENSG00000160310|ENST00000355680|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-4|PRMT2;nc|ENSG00000160310|P55345-7|PRMT2;PRMT2|p.M222I|1|0.14|ENSG00000160310|chr21:46658756-46658756|G/C|missense_variant 13.50788311687929 0.4944073034352369 1 T{I|L}P{I|L}{M(Oxidation (M))|F} 5 -1 31.154 0 0 3.0321 0 0 438.10372784940085 0 438.10372784940085 0 20.184465535402296 0 0 0 0.8935078169319297 0 0 0 T{I|L}P{I|L}{M(Oxidation (M))|F} 3.0321 - 26 + NaN NaN 124889.8 NaN 20778 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25334 99.306 NaN 143830 35 0 10839 0.261 + 20631 PFDPLDRAFSE 11 48 647.3095764937405 1292.6046000542808 2 647.3101196289062 MULTI HCD FTMS 0 0 0 25330 25613.943359375 0.3274060652989699 1 -0.02573394775390625 4 Unmodified _PFDPLDRAFSE_ REV__ENSG00000141699|ENST00000309428|RETREG3;REV__nc|ENSG00000141699|Q86VR2-2|RETREG3 4.189502756095605 0.4005469306127019 1 DPE 3 -1 27.435 0 0 2.1225 0 0 933.4523792951187 0 933.4523792951187 0 14.75895023531386 0 0 0 0.4247425010840047 0 0 0 DPE 2.1225 - 26 NaN NaN 119912.4 NaN 20779 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25335 99.309 NaN 193720 35 0 32790 0.261 -1 IPMMRQHLA 9 34 564.7864072238121 1127.5582615144242 2 564.7861328125 MULTI HCD FTMS 0 0 0 25330 44145.75 0.772192068471956 -7 0.08257293701171875 5 2 Oxidation (M) _IPM(Oxidation (M))M(Oxidation (M))RQHLA_ ENST00000459894.6_1_10:104488208-104492643:+|nuORF 3.944395688203298 0.32111559684428237 1 {I|L}PE 3 -1 21.427 0 0 1.9003 0 0 0 785.3527315729124 785.3527315729124 13.68440000316717 0 0 0 0 0 0 0 0 {I|L}PE 1.9003 - 5 + NaN NaN 113782.4 NaN 20780 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25336 99.313 NaN 159000 35 0 20806 0.261 + -1 SYGMPCFFR 9 44 562.2388934983082 1122.4632340634164 2 562.2390747070312 MULTI HCD FTMS 0 0 0 25330 21729.7890625 0.3471344660517396 -7 0.08257293701171875 6 Oxidation (M) _SYGM(Oxidation (M))PCFFR_ REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|1|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|4 4.3292370932331545 0.3181982124262546 1 SY 2 -1 14.776 0 0 1.3164 0 0 163.95304803268056 705.3941134088499 869.3471614415305 0 0 0 0 0 0 0 0.3807196863200844 0 SY 1.3164 + + 14 + NaN NaN 106370 NaN 20781 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25337 99.316 NaN 216490 35 0 101690 0.261 + 16243 LPYNKPLD 8 27 480.2655038222323 NaN 0 480.2657165527344 PEAK HCD FTMS 0 0 0 25330 26233.36328125 0.9040946255788546 1 -0.02573394775390625 7 Unmodified _LPYNKPLD_ REV__ENSG00000253797|ENST00000521776|UTP14C 4.3292370932331545 0.38822285293237185 1 {M(Oxidation (M))|F}P 2 -1 10.969 0 0 1.1444 0 0 99.06877817127516 612.3030459878471 711.3718241591223 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P 1.1444 - 3 + NaN NaN 115722.1 NaN 20782 4553 25330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25339 99.321 NaN 100150 35 0 8708.4 0.326 + -1 IYATVCAFVGA 11 34 586.2970205399371 NaN 0 586.2806396484375 PEAK HCD FTMS 0 0 0 25338 4529.14990234375 0.7727833951818941 1 -0.01677703857421875 1 Carbamidomethyl (C) _IYATVC(Carbamidomethyl (C))AFVGA_ REV__ENSG00000152939|ENST00000325631|MARVELD2;REV__MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;REV__nc|ENSG00000152939|Q8N4S9-2|MARVELD2;REV__nc|ENSG00000152939|Q8N4S9-3|MARVELD2 5.296884461304476 0.3270944076746277 1 {I|L}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.80848 0 0 132.06048938295822 775.3413179986936 907.4018073816519 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.80848 - 10 + NaN NaN 101431 NaN 20783 4554 25338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25340 99.326 NaN 60135 35 0 10461 0.261 + -1 IYEYVMHQL 9 32 606.2906179707221 1210.5666830082441 2 606.2911987304688 MULTI HCD FTMS 0 0 0 25338 40629.01171875 0.8453143043697378 1 -0.01677703857421875 2 Oxidation (M) _IYEYVM(Oxidation (M))HQL_ REV__ENSG00000187240|ENST00000375735|DYNC2H1;REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 10.823927491677226 0.26684000660059787 1 [Y{I|L}]E 3 -1 39.705 0 0 3.2799 0 0 0 802.3543791007048 802.3543791007048 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 [Y{I|L}]E 3.2799 + + 4 + NaN NaN 104940.3 NaN 20784 4554 25338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25341 99.329 NaN 167100 35 0 13019 0.261 + 1858 CVRAILNFVP 10 55 566.3208918139923 1130.6272306947844 2 566.8238525390625 MULTI HCD FTMS 0 0 0 25338 62308.1640625 1 0 0 3 Unmodified _CVRAILNFVP_ ENST00000341567.8_1_7:66418291-66420567:+|nuORF 10.073929032068715 0.4168838835836452 1 V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PA]{I|L}GGPV{M(Oxidation (M))|F} 11 8 + 29.941 0 0 2.6481 2.6481 79.108 0 0 0 6.65424813441053 7.109729620304076 6.65424813441053 0.5551732784983123 0 0 0 0 0 V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PA]{I|L}GGPV{M(Oxidation (M))|F};V{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PA]{I|L}NPV{M(Oxidation (M))|F} 2.6481;2.599 -;- 579 + NaN NaN 111350.5 NaN 20785 4554 25338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25342 99.333 NaN 106590 35 0 8783 0.261 + 21046 PLTLFLTRP 9 49 529.322526192531 NaN 0 529.286865234375 PEAK HCD FTMS 0 0 0 25338 7751.07421875 0.39876969267940016 -7 0.10124969482421875 4 Unmodified _PLTLFLTRP_ REV__ENSG00000109794|ENST00000706927|FAM149A;REV__nc|ENSG00000109794|A5PLN7-4|FAM149A;REV__nc|ENSG00000109794|A5PLN7|FAM149A 1.6526216038709556 0.28723846860855273 1 {M(Oxidation (M))|F}T 2 -1 10.969 0 0 1.0381 0 0 486.3617647106294 319.1399325006469 805.5016972112763 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}T 1.0381 - 9 + NaN NaN 108955.6 NaN 20786 4554 25338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25344 99.338 NaN 456060 35 0 98206 0.327 + 31742 VYLLTFPPL 9 51 531.8153250157012 1061.6160970982023 2 532.8056030273438 MULTI HCD FTMS 0 0 0 25343 14945.736328125 0.1193322678775627 15 -0.2966461181640625 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 46.92087301778293 0.0358782797343276 1 P{M(Oxidation (M))|F}T[KP]V{M(Oxidation (M))|F} 7 7 41.203 0 0 3.8811 0 0 227.14821487339606 0 227.14821487339606 0 3.3356820820137756 0 0 0 0 0 0.3807196863200844 0.805462187404089 P{M(Oxidation (M))|F}T[KP]V{M(Oxidation (M))|F} 3.8811 - 286 + NaN NaN 152858.3 NaN 20787 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25345 99.342 NaN 291740 35 0 150770 0.261 + 32581 WKFQRYDLI 9 42 634.8426019133747 1267.6706508935492 2 634.8425903320312 MULTI HCD FTMS 0 0 0 25343 48751.82421875 0.12331545339340363 1 -0.0362091064453125 2 Unmodified _WKFQRYDLI_ TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant 29.081581746732265 0.1154664336125038 1 {NN|[MP]|[D{I|L}]|[EV]}Y{I|L}[Q{I|L}]YD{I|L}{I|L} 10 5 + 69.346 0 0 5.4704 5.4704 83.881 0 0 0 19.744237387763093 60.39381281052492 19.744237387763093 3.679767852945943 0 0.9247425010840047 1.3979400086720375 0 0.8494850021680094 {NN|[MP]|[D{I|L}]|[EV]}Y{I|L}[Q{I|L}]YD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YQ{I|L}{I|L}YD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[AG]{I|L}{I|L}YD{I|L}{I|L} 5.4704;5.1801;4.4571 -;-;- 63 NaN NaN 125729.2 NaN 20788 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25346 99.346 NaN 200610 35 0 10520 0.263 + -1 KRRQLCVRKLM 11 62 510.6343118121179 1528.8811060365538 3 510.634521484375 MULTI HCD FTMS 0 0 0 25343 109838.3203125 0.7172412192275043 -3 0.04961395263671875 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 1 E 1 -1 13.099 0 0 0.85677 0 0 1381.8288427082318 0 1381.8288427082318 0 10.6246936830415 0 0 0 0 0 0 0 E 0.85677 - 7 + NaN NaN 111356.4 NaN 20789 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25347 99.349 NaN 272150 35 0 57263 0.261 -1 NYLPFIMEL 9 54 578.2923718719834 NaN 0 578.3093872070312 PEAK HCD FTMS 0 0 0 25343 5102.02685546875 0.46296255599418584 2 -0.04914093017578125 4 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 14.838274106304384 0.2220448417561729 1 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}V 6 -1 21.885 0 0 1.8956 0 0 131.058927235951 257.1142977350219 388.1732249709729 0 0 0 0 0 0.25 0 0 0 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}V 1.8956 - 101 + NaN NaN 123580.8 NaN 20790 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25348 99.352 NaN 188650 35 0 25980 0.261 + -1 SMAIVMLICM 10 44 572.2685632726767 1142.5225736121533 2 572.281005859375 MULTI HCD FTMS 0 0 0 25343 30407.658203125 0.34760740276597657 3 -0.06539154052734375 5 2 Oxidation (M) _SM(Oxidation (M))AIVMLICM(Oxidation (M))_ REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;REV__ENSG00000141837|ENST00000360228|CACNA1A;REV__nc|ENSG00000141837|O00555-2|CACNA1A;REV__nc|ENSG00000141837|O00555-3|CACNA1A;REV__nc|ENSG00000141837|O00555-4|CACNA1A;REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__nc|ENSG00000141837|O00555-6|CACNA1A 9.38312468134398 0.42334543440173333 1 {I|L}{I|L}C{M(Oxidation (M))|F} 4 -1 27.167 0 0 2.3778 0 0 648.2894764630875 0 648.2894764630875 0 4.515449934959719 0 0 0 0 0 0 0 {I|L}{I|L}C{M(Oxidation (M))|F} 2.3778 + + 27 NaN NaN 121608.2 NaN 20791 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25349 99.356 NaN 144460 35 0 11694 0.261 -1 VMRVGILALC 10 47 566.3208918139923 1130.6272306947844 2 566.82373046875 MULTI HCD FTMS 0 0 0 25343 21431.841796875 0.3439652270186805 1 -0.0362091064453125 6 Carbamidomethyl (C) _VMRVGILALC(Carbamidomethyl (C))_ ZFR2|p.A663_K664insLCSN|1|0.17|ENSG00000105278|chr19:3816787-3816788|-/GTTACTACACAA|inframe_insertion 3.944395688203298 0.4544253912184634 1 S 1 -1 5.4846 0 0 0.48509 0 0 203.1844217046725 837.3883460891358 1040.5727677938082 0 0 0 0 0 0 0 0 0 S 0.48509 - 16 + NaN NaN 108115.2 NaN 20792 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25350 99.359 NaN 123020 35 0 13981 0.261 + -1 YDWVCIVDGS 10 48 607.2647632962166 1212.5149736592332 2 607.2639770507812 MULTI HCD FTMS 0 0 0 25343 41853.890625 0.7119114823127345 -5 0.08855438232421875 7 Carbamidomethyl (C) _YDWVC(Carbamidomethyl (C))IVDGS_ REV__ENSG00000126522|ENST00000304874|ASL;REV__nc|ENSG00000126522|P04424-2|ASL;REV__nc|ENSG00000126522|P04424-3|ASL 6.2057823575117 0.44245551207394906 1 {[YD]|[{M(Oxidation (M))|F}M]}Q 3 -1 20.775 0 0 1.7134 0 0 0 803.3576754205686 803.3576754205686 -0.6516688424750328 0 -0.6516688424750328 0 0 0.2614393726401688 1.3979400086720375 0 0 {[YD]|[{M(Oxidation (M))|F}M]}Q 1.7134 - 52 + NaN NaN 98918.4 NaN 20793 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25351 99.362 NaN 24994 35 0 4510.4 0.261 + 23953 RVFFRFPRR 9 20 640.8764038085938 NaN 0 640.8764038085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RVFFRFPRR_ REV__ENST00000263776.8_1_11:44087965-44089254:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82208.6 NaN 20794 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25352 99.366 NaN 44073 35 0 12501 0.261 -1 VRRLLECPR 9 25 599.8452758789062 NaN 0 599.8452758789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _VRRLLEC(Carbamidomethyl (C))PR_ ENST00000518801.5_1_8:57125444-57127185:+|nuORF 0.5247636613948944 0.2927039108006614 1 G 1 -1 0.088644 0 0 0.0074013 0 0 598.8932234357436 538.7398775690061 1137.6331010047497 0 0 0 0 0 0 0 0 0 G 0.0074013 - 1 + NaN NaN 96149.3 NaN 20795 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25353 99.369 NaN 41657 35 0 3729.8 0.261 + 24249 RYFLPPYTF 9 27 602.3134247408524 NaN 0 602.31201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 3.944395688203298 0.27613285122220627 1 M 1 9 3.0989 0 0 0.25768 0 0 281.76776637447966 786.7979220025999 1068.5656883770796 0 0 0 0 0 0 0 0 0 M 0.25768 - 1 + NaN NaN 93001 NaN 20796 4555 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25355 99.374 NaN 2449500 35 0 158700 0.327 + 27477 SYYGPLNLLTF 11 92 644.3346554594897 1286.6547579857793 2 644.3347778320312 MULTI HCD FTMS 0 0 0 25354 1037788.8125 0.26578208592014596 -4 0.08582305908203125 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 285.61551231160604 1.1100289986155166E-67 1 {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 11 0 + 126.6 0 0 9.8392 9.8392 96.379 0 0 0 14.005949579419095 88.51397345193905 14.005949579419095 17.258177263343413 0 3.579689690656103 0 2.328340932684427 1.5356668758921828 + + {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}T{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}{M(Oxidation (M))|F}G[WR]{M(Oxidation (M))|F}{I|L}[VP];{[YC]|[HE]}{M(Oxidation (M))|F}G[WR]{I|L}{M(Oxidation (M))|F}[VP];[WP]{I|L}{I|L}D{I|L}PG{M(Oxidation (M))|F}{[ET]|[MV]};[{I|L}T]{I|L}{[CA]|SS}[{M(Oxidation (M))|F}E]{I|L}{I|L}[HQ];[WP]{M(Oxidation (M))|F}G[{I|L}P]D{I|L}{I|L}{[ET]|[MV]} 9.8392;8.4978;7.9362;6.8907;3.1892;3.1892;0.81246;0.63585;0.17408 +;-;-;-;-;-;-;-;- + 3482 NaN NaN 467373 NaN 20797 4556 25354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25356 99.378 NaN 306380 35 0 70853 0.262 -1 LELMLHEVL 9 54 556.8037619488332 1111.5929709644663 2 556.8037719726562 MULTI HCD FTMS 0 0 0 25354 151190.78125 0.5950968917993911 4 -0.0656585693359375 2 Oxidation (M) _LELM(Oxidation (M))LHEVL_ ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1 24.020572477871973 0.15282392193088168 1 {I|L}PEY{I|L}PC 7 -1 74.175 0 0 6.6728 0 0 0 293.1722811334594 293.1722811334594 54.76480765336908 0 0 0 0 1.6747425010840047 1.2218487496163564 0.4247425010840047 0 {I|L}PEY{I|L}PC 6.6728 - 180 + NaN NaN 127317.4 NaN 20798 4556 25354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25357 99.382 NaN 85980 35 0 12552 0.261 + 13493 KYPENFFLL 9 40 585.8132948421918 1169.6120367511835 2 585.8132934570312 MULTI HCD FTMS 0 0 0 25354 41876.89453125 0.6386052658008635 4 -0.0656585693359375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.445 0 0 2.603 0 0 778.3642445294937 0 778.3642445294937 0 11.861818737241734 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.603 + + 18 NaN NaN 95198.9 NaN 20799 4556 25354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25359 99.387 NaN 1143000 35 0 253030 0.327 + 15723 LPEYLPFVL 9 33 545.8127422494925 1089.610931565785 2 545.81298828125 MULTI HCD FTMS 0 0 0 25358 1024297.9375 0.6061694046576546 5 -0.09221649169921875 1 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 34.10243960390752 0.09241788333544565 1 {I|L}P{M(Oxidation (M))|F}V{I|L} 5 4 55.701 0 0 5.112 0 0 502.2408924787125 0 502.2408924787125 0 55.70107520596089 0 0 0 1.9247425010840047 0 0 0 + {I|L}P{M(Oxidation (M))|F}V{I|L} 5.112 + + 55 NaN NaN 254082.9 NaN 20800 4557 25358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25360 99.391 NaN 308730 35 0 64953 0.261 -1 0 55 636.3189047341003 1270.6232565350006 2 636.3192749023438 MULTI HCD FTMS 0 0 0 25358 140650.375 0.3139784715202097 16 -0.312530517578125 2 NaN NaN 1 K{I|L}S{M(Oxidation (M))|F} 4 -1 42.607 0 0 3.3533 0 0 777.3325672834 0 777.3325672834 0 34.53524722859527 0 0 0 0.8807196863200843 0 0.4247425010840047 0 K{I|L}S{M(Oxidation (M))|F} 3.3533 - 32 NaN NaN 136961.4 NaN 20801 4557 25358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25361 99.395 NaN 149060 35 0 8387.3 0.263 -1 MPLKLRFKRRW 11 58 516.309694351103 1545.9072536535086 3 516.3095092773438 MULTI HCD FTMS 0 0 0 25358 48306.6328125 0.7121734016537699 -5 0.0987548828125 3 Oxidation (M) _M(Oxidation (M))PLKLRFKRRW_ ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000105722|P50548-2|ERF 0.09484139111097674 0.41850472438158626 1 {I|L} 1 -1 3.0989 0 0 0.20046 0 0 935.5569861747964 494.2293795221313 1429.7863656969278 0 0 0 0 0 0 0 0 0 {I|L} 0.20046 + + 3 + NaN NaN 105791 NaN 20802 4557 25358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25362 99.398 NaN 86535 35 0 22760 0.261 -1 QCFQWVFWR 9 33 452.880608727809 NaN 0 452.8805236816406 PEAK HCD FTMS 0 0 0 25358 17195.2578125 0.603258373011653 1 -0.0162506103515625 4 Carbamidomethyl (C) _QC(Carbamidomethyl (C))FQWVFWR_ ENST00000527001.5_1_11:34663639-34668016:+|nuORF;ENST00000529161.1_1_11:34663867-34668016:+|nuORF;ENST00000531728.5_1_11:34645848-34668019:+|nuORF;ENST00000532302.1_1_11:34663985-34668016:+|nuORF 0.235843874597859 0.29410397576755687 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92172.1 NaN 20803 4557 25358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25364 99.403 NaN 1251400 35 0 312590 0.327 + 28319 TMFGEFILL 9 53 535.7831640460527 1069.5517751589052 2 535.783447265625 MULTI HCD FTMS 0 0 0 25363 347781.59375 0.315048096521424 -2 0.02918243408203125 1 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 36.04419817259434 0.08350412372117409 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 46.186 0 0 4.3182 0 0 565.2198353498062 0 565.2198353498062 0 32.99803764475705 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.3182 + + 74 NaN NaN 278697.4 NaN 20804 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25365 99.408 NaN 183550 35 0 23244 0.261 + 10052 IFDVASIIL 9 42 495.79712618077644 989.5796994283529 2 495.7973327636719 MULTI HCD FTMS 0 0 0 25363 38970.26953125 0.19846254420174975 -2 0.02918243408203125 2 Unmodified _IFDVASIIL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 52.268347100219714 0.028397529699942435 1 AS{I|L}{I|L}{I|L} 5 4 63.315 0 0 6.3982 0 0 474.2469959943375 0 474.2469959943375 0 56.32576888900239 0 0 0 1.9247425010840047 0 0.8494850021680094 0 + AS{I|L}{I|L}{I|L} 6.3982 + + 86 NaN NaN 116520.7 NaN 20805 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25366 99.411 NaN 434390 35 0 66076 0.261 + 30039 VFQNFPLLF 9 65 562.8105822347852 1123.6066115363703 2 562.8101196289062 MULTI HCD FTMS 0 0 0 25363 34850.91796875 0.15028693510388386 -2 0.02918243408203125 3 Unmodified _VFQNFPLLF_ ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1 30.224811164608877 0.11021837014094292 1 {I|L}{M(Oxidation (M))|F} 2 7 25.701 0 0 2.2874 0 0 845.4442407861735 0 845.4442407861735 0 13.711375162600703 0 0 0 0.9247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2874 + + 50 + NaN NaN 144914.5 NaN 20806 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25367 99.414 NaN 100220 35 0 14338 0.261 -1 DYMNLLGMIF 10 34 624.7844240297092 1247.5542951262182 2 624.7854614257812 MULTI HCD FTMS 0 0 0 25363 16284.0048828125 0.215942883963908 -10 0.1743011474609375 4 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 20.41453444215458 0.3201613495159799 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 35.713 0 0 2.8627 0 0 652.2516468842442 0 652.2516468842442 0 30.228787452803374 0 0 0 1.3494850021680094 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.8627 + + 9 NaN NaN 101944.1 NaN 20807 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25368 99.418 NaN 329260 35 0 60693 0.264 + 3422 EFHFWIYHF 9 48 442.54080559927957 1324.6005873980387 3 442.8756408691406 MULTI HCD FTMS 0 0 0 25363 25257.505859375 0.19238321905246575 -2 0.02918243408203125 5 Unmodified _EFHFWIYHF_ ENST00000421210.1_2_10:64135465-64135950:+|nuORF 5.296884461304476 0.3108627248283497 1 T{M(Oxidation (M))|F} 2 8 28.711 0 0 2.1675 0 0 1058.4729782382606 0 1058.4729782382606 0 22.11758134947864 0 0 0 0.5 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.1675 - 23 NaN NaN 150800.7 NaN 20808 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25369 99.421 NaN 59101 35 0 11757 0.261 + 8134 GNHSKSFE 8 30 453.2095991595399 NaN 0 453.2098083496094 PEAK HCD FTMS 0 0 0 25363 33964.4140625 0.6084661490498501 -2 0.02918243408203125 6 Unmodified _GNHSKSFE_ REV__ENST00000480279.1_1_9:108226543-108246709:+|nuORF 2.577480529830294 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 0.71334 0 0 0.078874 0 0 470.0787004169329 284.23481165103755 754.3135120679705 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.078874 + + 1 + NaN NaN 88496.3 NaN 20809 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25370 99.424 NaN 59292 35 0 5650.5 0.261 + 35612 YYIFIPSKF 9 38 589.3185640871462 NaN 0 589.3011474609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.22786006501039813 1 {I|L} 1 8 10.401 0 0 0.88397 0 0 326.13412416862985 734.3892916315061 1060.523415800136 0 0 0 0 0 0.7302046884880937 0 0 0 + {I|L} 0.88397 + + 19 + NaN NaN 95243.1 NaN 20810 4558 25363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25372 99.43 NaN 141370 35 0 25409 0.327 + 31743 VYLLTFPPL 9 42 531.8153250157012 1061.6160970982023 2 531.8154907226562 MULTI HCD FTMS 0 0 0 25371 153342.609375 0.2632142643345291 18 -0.354217529296875 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 81.86404211737425 0.005249203329642222 1 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P] 9 0 + 68.65 0 0 6.4666 6.4666 91.325 0 0 0 5.6424927368725974 59.186296826174996 5.6424927368725974 16.505149978319906 0 2.3494850021680094 0 1.2302046884880937 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P];[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}PVVY[{I|L}P] 6.4666;4.9119;4.5532;3.8214 +;-;-;- + 191 NaN NaN 98654.8 NaN 20811 4559 25371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25373 99.434 NaN 99605 35 0 9432.7 0.261 + 35528 YYGPLNLLTF 10 36 600.8189691942443 1199.6233854552886 2 601.3212280273438 MULTI HCD FTMS 0 0 0 25371 87211.03125 0.02058585825384369 -14 0.22945404052734375 2 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 47.748688679222035 0.08597705450879027 1 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 43.928 0 0 3.6618 0 0 707.3275782707705 0 707.3275782707705 0 33.470325397914564 0 0 0 1.5 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.6618 + + 14 NaN NaN 112889.2 NaN 20812 4559 25371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25375 99.439 NaN 387020 35 0 38736 0.326 + 10999 IYEPNFIFF 9 52 595.3002204512211 1188.585887969242 2 595.30029296875 MULTI HCD FTMS 0 0 0 25374 242915.84375 0.02212322513453395 49 -0.8997879028320312 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 47.748688679222035 0.03472022231463587 1 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 65.542 0 0 5.5143 5.5143 92.342 0 0 0 19.990823894397565 62.44273099358573 19.990823894397565 65.5416747850277 0 1.8494850021680094 1.5228787452803376 0 0.4247425010840047 + + [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5143 + + 53 NaN NaN 146734.9 NaN 20813 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25376 99.443 NaN 210020 35 0 30858 0.261 + 25512 SFISGLFNF 9 63 516.263465910779 1030.512378888358 2 516.2637329101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SFISGLFNF_ ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-2|ACLY 39.94969957227396 0.06557568441294001 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F} 3 6 31.682 0 0 3.0744 0 0 604.322160611263 0 604.322160611263 0 6.22486274231747 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}N{M(Oxidation (M))|F} 3.0744 + + 49 NaN NaN 125685.6 NaN 20814 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25377 99.447 NaN 40017 35 0 5087 0.261 + 17125 LYLLYCPLAV 10 29 584.3294067382812 NaN 0 584.3294067382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LYLLYCPLAV_ REV__ENSG00000108846|ENST00000285238|ABCC3;REV__nc|ENSG00000108846|O15438-2|ABCC3;REV__nc|ENSG00000108846|O15438-3|ABCC3;REV__nc|ENSG00000108846|O15438-4|ABCC3;REV__nc|ENSG00000108846|O15438-5|ABCC3 7.910154910731844 0.33341429274560913 1 {I|L} 1 -1 8.9794 0 0 0.76968 0 0 601.3800391583999 449.15317712955317 1050.533216287953 0 0 0 0 0 0.5 0 0 0 {I|L} 0.76968 + + 5 + NaN NaN 87091.9 NaN 20815 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25378 99.45 NaN 95258 35 0 8420.6 0.261 + -1 LFMGVIGFL 9 37 506.77957106286453 1011.5445891925291 2 506.7793884277344 MULTI HCD FTMS 0 0 0 25374 28849.73046875 0.5902304818180125 1 -0.03232574462890625 4 Oxidation (M) _LFM(Oxidation (M))GVIGFL_ REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1 28.173230860318316 0.11963627304438548 1 {I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 4 -1 28.5 0 0 2.8175 0 0 563.2761526994713 0 563.2761526994713 0 7.530834337684311 0 0 0 1.2302046884880937 0 0 0 {I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 2.8175 - 19 NaN NaN 112381.6 NaN 20816 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25379 99.454 NaN 76434 35 0 7773.8 0.261 + 13494 KYPENFFLL 9 37 585.8132948421918 1169.6120367511835 2 586.2802734375 MULTI HCD FTMS 0 0 0 25374 18343.220703125 0.3943408523382669 29 -0.5187454223632812 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.445 0 0 3.0305 0 0 778.3624745099625 0 778.3624745099625 0 17.486512420283233 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0305 + + 17 NaN NaN 89762.8 NaN 20817 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25380 99.457 NaN 93055 35 0 28367 0.262 -1 0 29 469.2369412837583 468.2296648171583 1 470.235595703125 MULTI HCD FTMS 0 0 0 25374 17896.689453125 0.6812028672193741 1 -0.03232574462890625 6 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98931 NaN 20818 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25381 99.46 NaN 57723 35 0 7100.7 0.261 + 28968 TYAPLFSLPSF 11 33 621.8240545348034 NaN 0 621.8245849609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 18.373094154950223 0.2691433934672084 1 {M(Oxidation (M))|F}S{I|L} 3 8 25.802 0 0 2.0781 0 0 545.2845703959755 346.1402681940063 891.4248385899818 0 0 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}S{I|L} 2.0781 + + 41 + NaN NaN 89255.8 NaN 20819 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25382 99.464 NaN 64848 35 0 6608.5 0.262 -1 YNYMCDSS 8 29 528.174921989366 NaN 0 527.7562866210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _YNYM(Oxidation (M))C(Carbamidomethyl (C))DSS_ TP53|p.N239D|1|0.37|ENSG00000141510|chr17:7674248-7674248|T/C|missense_variant 0.6903765706972694 0.38822285293237185 1 S 1 -1 5.4846 0 0 0.52019 0 0 555.0936051097882 409.1898287408813 964.2834338506696 0 0 0 0 0 0 0 0 0 S 0.52019 + + 1 + NaN NaN 92375.6 NaN 20820 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25383 99.467 NaN 29301 35 0 4778.2 0.261 -1 MVPVLLSLL 9 28 500.8092956542969 NaN 0 500.8092956542969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _M(Oxidation (M))VPVLLSLL_ ENSG00000160862|ENST00000292401|AZGP1;ENST00000495765.1_1_7:99569363-99573643:-|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87556.6 NaN 20821 4560 25374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25386 99.479 NaN 215500 35 0 38858 0.327 + 7722 FYLMQIVEI 9 55 578.3094055838817 1154.6042582345633 2 578.3095092773438 MULTI HCD FTMS 0 0 0 25385 93056.3203125 0.21011409148444457 3 -0.05135345458984375 1 Unmodified _FYLMQIVEI_ ENSG00000137975|ENST00000370565|CLCA2 39.94969957227396 0.06557568441294001 1 MQ{I|L}VE{I|L} 6 3 55.75 0 0 4.8285 0 0 423.2154713361344 0 423.2154713361344 0 50.26593150440647 0 0 0 1.610924374808178 0 0 0 + MQ{I|L}VE{I|L} 4.8285 + + 83 NaN NaN 119722.1 NaN 20822 4562 25385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25387 99.483 NaN 213820 35 0 10254 0.261 + -1 KRRQLCVRKLM 11 64 510.6343118121179 1528.8811060365538 3 510.6345520019531 MULTI HCD FTMS 0 0 0 25385 119567.8671875 0.7807748934798224 4 -0.0709991455078125 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.4545168274142398 0.41692731010159206 1 K 1 -1 2.7642 0 0 0.1808 0 0 982.5551305500288 415.19687830142817 1397.752008851457 0 0 0 0 0 0 0 0 0 K 0.1808 + + 12 + NaN NaN 111068.2 NaN 20823 4562 25385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25388 99.486 NaN 212010 35 0 22851 0.261 -1 0 50 571.9823326342935 3996.825393173854 7 572.2805786132812 MULTI HCD FTMS 0 0 0 25385 6198.13720703125 0.2963931005877247 -2 0.03948974609375 3 NaN NaN 1 {I|L}{I|L}C{M(Oxidation (M))|F} 4 -1 23.532 0 0 0.58877 0 0 3502.5692419060792 0 3502.5692419060792 0 7.334106490399247 0 0 0 0 0 0 0 {I|L}{I|L}C{M(Oxidation (M))|F} 0.58877 - 39 + NaN NaN 115298.5 NaN 20824 4562 25385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25389 99.49 NaN 148980 35 0 16247 0.261 + 13788 KYPSPFFVF 9 57 566.2980568922715 NaN 0 566.2969970703125 PEAK HCD FTMS 0 0 0 25385 42621.1015625 0.5356938159116598 2 -0.02533721923828125 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.145325121643443 1 NPV 3 7 22.92 0 0 2.0272 0 0 655.3387762827866 162.05605493717033 817.3948312199569 0 0 0 0 0 1.4247425010840047 0 0 0 NPV 2.0272 - 54 + NaN NaN 101009.6 NaN 20825 4562 25385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25391 99.495 NaN 2396300 35 0 995950 0.327 + 26523 SVLILASY 8 52 433.254706299722 864.494859666244 2 433.2547607421875 MULTI HCD FTMS 0 0 0 25390 1063832.125 0.011309299260918471 -14 0.253326416015625 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 16.594 0 0 1.9195 0 0 596.3856969300099 164.0387362115844 760.4244331415942 0 0 0 0 0 0.805462187404089 0 0.3054621874040891 0 T 1.9195 - 13 + NaN NaN 454073.7 NaN 20826 4563 25390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25392 99.499 NaN 205440 35 0 40277 0.261 -1 VMSWIIPVF 9 45 554.2984842227787 1106.5824155123573 2 554.2986450195312 MULTI HCD FTMS 0 0 0 25390 54368.359375 0.5014348841860977 1 -0.00959014892578125 2 Oxidation (M) _VM(Oxidation (M))SWIIPVF_ ENSG00000103257|ENST00000261622|SLC7A5 16.942295170755138 0.21397866736869717 1 VN{I|L} 3 -1 29.693 0 0 2.6833 0 0 148.06789465561798 629.2770208453426 777.3449155009605 0 0 0 0 0 1 0 0 0.5 VN{I|L} 2.6833 - 26 + NaN NaN 114495.2 NaN 20827 4563 25390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25394 99.504 NaN 1947000 35 0 125760 0.327 + 27478 SYYGPLNLLTF 11 90 644.3346554594897 1286.6547579857793 2 644.3348999023438 MULTI HCD FTMS 0 0 0 25393 3288584 0.8422202135115204 4 -0.09462738037109375 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 270.0645364180072 3.370931493933368E-54 1 {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 11 0 + 127.8 0 0 9.9328 9.9328 96.529 0 0 0 15.540460430947533 85.24160116914355 15.540460430947533 17.838096733120267 0 3.6237125054200234 0 2.304113429432413 1.5114393726401687 + + {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}T{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}TEH{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}TEH{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};[KG]{[HG]|PP}{I|L}NCC{I|L}{I|L}{[ET]|[MV]};{[YC]|[HE]}{M(Oxidation (M))|F}G[WR]{I|L}{M(Oxidation (M))|F}[VP];{[YC]|[HE]}{M(Oxidation (M))|F}G[WR]{M(Oxidation (M))|F}{I|L}[VP];[KG]{[HG]|PP}{I|L}N{I|L}[TA]{M(Oxidation (M))|F}{[ET]|[MV]} 9.9328;8.5464;8.0486;6.9582;5.6811;4.7342;3.4572;2.9707;2.9707;2.8718 +;-;-;-;-;-;-;-;-;- + 4185 NaN NaN 385095.9 NaN 20828 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25395 99.509 NaN 243220 35 0 57775 0.262 + 15724 LPEYLPFVL 9 25 545.8127422494925 1089.610931565785 2 545.8128662109375 MULTI HCD FTMS 0 0 0 25393 355649.6875 0.21046997308686458 12 -0.25988006591796875 2 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 16.942295170755138 0.21397866736869717 1 V{I|L} 2 7 25.969 0 0 2.3833 0 0 859.4472737640829 0 859.4472737640829 0 15.484550065040281 0 0 0 0.5 0 0 0 + V{I|L} 2.3833 + + 3 NaN NaN 113910.4 NaN 20829 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25396 99.512 NaN 469490 35 0 222200 0.262 + 8549 HAPYYGNP 8 44 459.71071917828823 NaN 0 459.7104187011719 PEAK HCD FTMS 0 0 0 25393 111284.9921875 0.016979295234849753 -15 0.26291656494140625 3 Unmodified _HAPYYGNP_ REV__ENSG00000141837|ENST00000360228|CACNA1A;REV__nc|ENSG00000141837|O00555-4|CACNA1A;REV__nc|ENSG00000141837|O00555-6|CACNA1A 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 154363.7 NaN 20830 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25397 99.515 NaN 138370 35 0 30567 0.261 -1 VMSWIIPVF 9 34 554.2984842227787 1106.5824155123573 2 554.2991943359375 MULTI HCD FTMS 0 0 0 25393 79044.84375 0.7290240597091668 2 -0.04566192626953125 4 Oxidation (M) _VM(Oxidation (M))SWIIPVF_ ENSG00000103257|ENST00000261622|SLC7A5 23.1484247019978 0.1603590852062899 1 {I|L}[VP]{M(Oxidation (M))|F} 4 -1 30.005 0 0 2.7115 0 0 632.299297918552 0 632.299297918552 0 30.00508444608478 0 0 0 1.3807196863200843 0 0 0 {I|L}[VP]{M(Oxidation (M))|F} 2.7115 + + 8 NaN NaN 118752.3 NaN 20831 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25398 99.519 NaN 254090 35 0 59892 0.263 + 28120 TIKDPPVL 8 45 441.7681147617369 881.5216765902738 2 441.76812744140625 MULTI HCD FTMS 0 0 0 25393 31254.40625 0.006871617098878084 -12 0.21630859375 5 Unmodified _TIKDPPVL_ ENSG00000145794|ENST00000503335|MEGF10;ENST00000515622.1_1_5:126783361-126801299:+|nuORF 0.7936320650641473 0.540814922690045 1 D 1 7 5.4846 0 0 0.62217 0 0 344.26955364281133 419.21039758853755 763.4799512313489 0 0 0 0 0 0 0 0 0 + D 0.62217 + + 14 + NaN NaN 128739.1 NaN 20832 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25399 99.522 NaN 91887 35 0 10496 0.261 + 13789 KYPSPFFVF 9 32 566.2980568922715 NaN 0 566.2985229492188 PEAK HCD FTMS 0 0 0 25393 32188.244140625 0.40456587697298635 4 -0.09462738037109375 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.1998403495282098 1 V 1 8 16.237 0 0 1.4362 0 0 165.0791212468518 863.4097503734673 1028.488871620319 0 0 0 0 0 0.9247425010840047 0 0 0 + V 1.4362 + + 7 + NaN NaN 107613.8 NaN 20833 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25400 99.525 NaN 44917 35 0 5131.8 0.261 + -1 LYDAHRVCM 9 34 582.770263671875 NaN 0 582.770263671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _LYDAHRVC(Carbamidomethyl (C))M_ REV__ENSG00000197535|ENST00000399233|MYO5A;REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A;REV__nc|ENSG00000197535|Q9Y4I1|MYO5A 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90315.8 NaN 20834 4564 25393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25402 99.53 NaN 247610 35 0 44413 0.327 -1 0 44 636.3189047341003 1270.6232565350006 2 636.3194580078125 MULTI HCD FTMS 0 0 0 25401 27603.236328125 0.06161961495883543 24 -0.4279022216796875 1 NaN NaN 1 YG[HQ]{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 9 -1 42.826 0 0 3.3705 0 0 250.09443862129064 0 250.09443862129064 0 31.857274781860525 0 0 0 1.9489700043360187 0 0.4247425010840047 0.3252574989159953 YG[HQ]{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 3.3705 - 67 NaN NaN 127048 NaN 20835 4565 25401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25403 99.535 NaN 724160 35 0 358860 0.264 -1 0 41 452.22796409444214 902.4413752556843 2 452.2278747558594 MULTI HCD FTMS 0 0 0 25401 147474.46875 0.03085176034011011 -8 0.1435699462890625 2 NaN NaN 1 M 1 -1 8.9794 0 0 0.99501 0 0 342.07615416369055 426.2996205273427 768.3757746910333 0 0 0 0 0 0.3494850021680094 0 0 0 M 0.99501 - 7 + NaN NaN 190164.8 NaN 20836 4565 25401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25404 99.538 NaN 791400 35 0 161760 0.261 + 31213 VVPIGLYS 8 40 424.249651760148 846.4847505870961 2 424.2491149902344 MULTI HCD FTMS 0 0 0 25401 159772.34375 0.03002844433063319 -11 0.2094879150390625 3 Unmodified _VVPIGLYS_ REV__ENSG00000136002|ENST00000409359|ARHGEF4 5.760428011301431 0.5334459684533844 1 T 1 -1 18.227 0 0 2.1532 0 0 578.3749026318072 164.0387786418327 742.4136812736399 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 10 NaN NaN 199128 NaN 20837 4565 25401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25405 99.542 NaN 96686 35 0 6073.7 0.261 -1 MPLKLRFKRRW 11 57 516.309694351103 1545.9072536535086 3 516.3099365234375 MULTI HCD FTMS 0 0 0 25401 32476.162109375 0.4787884705577741 3 -0.06861114501953125 4 Oxidation (M) _M(Oxidation (M))PLKLRFKRRW_ ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000105722|P50548-2|ERF 0.5059551277355931 0.4167017191902429 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.29782 0 0 805.6334632255777 590.2289522760374 1395.862415501615 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.29782 + + 4 + NaN NaN 97525.5 NaN 20838 4565 25401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25406 99.545 NaN 80968 35 0 8316.9 0.261 + 13495 KYPENFFLL 9 36 585.8132948421918 1169.6120367511835 2 586.3155517578125 MULTI HCD FTMS 0 0 0 25401 20158.6640625 0.4333690848005095 34 -0.64013671875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3663807599625 0 778.3663807599625 0 12.614393726401687 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 14 NaN NaN 97370.9 NaN 20839 4565 25401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25408 99.55 NaN 581880 35 0 94008 0.327 -1 LTLLAMEC 8 50 455.2255696678508 NaN 0 455.23687744140625 PEAK HCD FTMS 0 0 0 25407 28105.880859375 0.4521545776633384 6 -0.13006591796875 1 Oxidation (M) _LTLLAM(Oxidation (M))EC_ ENSG00000241644|ENST00000013222|INMT;nc|ENSG00000241644|O95050-2|INMT 2.577480529830294 0.38822285293237185 1 T 1 -1 6.9897 0 0 0.76942 0 0 189.0209259375601 615.3443393457113 804.3652652832714 0 0 0 0 0 0 0 0 0 T 0.76942 + + 6 + NaN NaN 168591.5 NaN 20840 4566 25407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25409 99.554 NaN 313830 35 0 66128 0.261 + 30040 VFQNFPLLF 9 39 562.8105822347852 1123.6066115363703 2 562.810546875 MULTI HCD FTMS 0 0 0 25407 112050.3203125 0.4831924149680605 6 -0.13006591796875 2 Unmodified _VFQNFPLLF_ ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1 23.1484247019978 0.1603590852062899 1 G{M(Oxidation (M))|F} 2 8 25.969 0 0 2.3112 0 0 901.5065271631266 0 901.5065271631266 0 18.979400086720375 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 2.3112 - 26 + NaN NaN 129154.2 NaN 20841 4566 25407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25410 99.558 NaN 68469 35 0 10038 0.262 -1 0 35 472.2750998805621 471.2678234139621 1 472.2751770019531 MULTI HCD FTMS 0 0 0 25407 20719.162109375 0.1854379657663991 33 -0.6204910278320312 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90250.4 NaN 20842 4566 25407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25411 99.561 NaN 135340 35 0 10868 0.261 + 10053 IFDVASIIL 9 46 495.79712618077644 989.5796994283529 2 496.2926025390625 MULTI HCD FTMS 0 0 0 25407 27018.095703125 0.2546021123564304 6 -0.13006591796875 4 Unmodified _IFDVASIIL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 46.020951573049366 0.037705236580089195 1 AS{I|L}{I|L}{I|L} 5 4 59.266 0 0 5.989 0 0 474.24727065254064 0 474.24727065254064 0 53.78144697160131 0 0 0 1.8252574989159953 0 0.805462187404089 0 + AS{I|L}{I|L}{I|L} 5.989 + + 47 NaN NaN 102245.9 NaN 20843 4566 25407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25413 99.566 NaN 2569900 35 0 211920 0.327 + 35529 YYGPLNLLTF 10 88 600.8189691942443 1199.6233854552886 2 600.8190307617188 MULTI HCD FTMS 0 0 0 25412 2074479.875 0.3450109674470803 -6 0.09441375732421875 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 171.0860797660465 3.2609084588946327E-11 1 YYGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 115.11 0 0 9.5957 9.5957 94.596 0 0 0 8.01342692730789 8.01342692730789 8.01342692730789 10.326385825694942 0 3.2614393726401687 1.6989700043360187 0.3807196863200844 1.6989700043360187 + + YYGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}N{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};YYGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}GG{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[WP]{I|L}[EP][TP]{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HK]N[MT]{M(Oxidation (M))|F}[VP];{[QV]|[N{I|L}]|[RA]|[KV]}G{I|L}[QP][TP]{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HK]N{I|L}YC[VP];{[QV]|[N{I|L}]|[RA]|[KV]}[HK]NYC{I|L}[VP];{[QV]|[N{I|L}]|[RA]|[KV]}[HK]N{I|L}YA{NN|[MP]|[D{I|L}]|[EV]} 9.5957;8.7349;8.1638;6.2634;2.6829;2.0039;1.9997;1.9482;1.9423;1.8322 +;-;-;-;-;-;-;-;-;- + 1922 NaN NaN 474001.7 NaN 20844 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25414 99.571 NaN 737650 35 0 162670 0.261 + 2516 DSLFCFLLL 9 44 535.7831640460527 1069.5517751589052 2 535.783447265625 MULTI HCD FTMS 0 0 0 25412 340354.90625 0.3083204151191231 7 -0.148345947265625 2 Unmodified _DSLFCFLLL_ SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 26.88365393820708 0.12808753336095696 1 C{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5 4 44.112 0 0 4.1244 0 0 462.21531874824376 0 462.21531874824376 0 37.12266579556342 0 0 0 1.305462187404089 0 0 0 + C{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.1244 + + 24 NaN NaN 205463.5 NaN 20845 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25415 99.574 NaN 363240 35 0 32376 0.261 + 11000 IYEPNFIFF 9 55 595.3002204512211 1188.585887969242 2 595.3001708984375 MULTI HCD FTMS 0 0 0 25412 124934.796875 0.011378264158213821 56 -1.016998291015625 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 39.94969957227396 0.06557568441294001 1 [Y{I|L}]ENP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 62.304 0 0 5.2418 5.2418 90.962 0 0 0 18.741436528314566 49.116225017174386 18.741436528314566 36.65205560610346 0 2.024227503252014 1.3979400086720375 0 0 [Y{I|L}]ENP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}[HA]{I|L}[DP]{M(Oxidation (M))|F} 5.2418;2.1582 -;- 197 NaN NaN 138282.8 NaN 20846 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25416 99.577 NaN 105640 35 0 8638.6 0.261 + 29847 VEVFLPTLF 9 48 532.8050674999417 1063.5955820666834 2 532.8055419921875 MULTI HCD FTMS 0 0 0 25412 30296.287109375 0.032078939861624085 13 -0.24866485595703125 4 Unmodified _VEVFLPTLF_ ENST00000539434.1_1_12:67663527-67686741:+|nuORF 7.289230182591677 0.29575926068275815 1 V{M(Oxidation (M))|F} 2 7 23.711 0 0 2.2294 0 0 799.4471302716812 0 799.4471302716812 0 16.721675119240516 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.2294 + + 24 NaN NaN 108603.2 NaN 20847 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25417 99.581 NaN 195810 35 0 29743 0.261 + 10054 IFDVASIIL 9 53 495.79712618077644 989.5796994283529 2 495.79705810546875 MULTI HCD FTMS 0 0 0 25412 53204.390625 0.27095216053545557 7 -0.148345947265625 5 Unmodified _IFDVASIIL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 39.957323273324995 0.06554068735427583 1 S{I|L}{I|L}{I|L} 4 5 50.477 0 0 5.1009 0 0 545.2831898419937 0 545.2831898419937 0 44.992822134202015 0 0 0 1.3494850021680094 0 0.805462187404089 0 + S{I|L}{I|L}{I|L} 5.1009 + + 90 NaN NaN 106914.7 NaN 20848 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25418 99.584 NaN 98124 35 0 12494 0.261 -1 DYMNLLGMIF 10 39 624.7844240297092 1247.5542951262182 2 624.78564453125 MULTI HCD FTMS 0 0 0 25412 67832.2890625 0.8995268812213586 -2 0.03589630126953125 6 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 10.799506525563784 0.4100970765206026 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 32.218 0 0 2.5825 0 0 652.2510555399754 0 652.2510555399754 0 27.78151250383644 0 0 0 1 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.5825 + + 32 NaN NaN 97351.1 NaN 20849 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25419 99.587 NaN 199900 35 0 38394 0.261 + 1816 CRPFEENGACK 11 43 627.2747877328766 1252.535022532553 2 627.7754516601562 MULTI HCD FTMS 0 0 0 25412 50858.62890625 0.24896816289166498 -5 0.087249755859375 7 Unmodified _CRPFEENGACK_ ENSG00000185650|ENST00000439696|ZFP36L1;ENST00000555997.1_1_14:69256252-69257717:-|nuORF 0.9622753412299311 0.4147004537482263 1 W 1 11 2.4743 0 0 0.19754 0 0 682.3744523194656 381.06037317447505 1063.4348254939407 0 0 0 0 0 0 0 0 0 W 0.19754 - 4 + NaN NaN 108918.1 NaN 20850 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25420 99.591 NaN 106360 35 0 5601.2 0.261 + 35613 YYIFIPSKF 9 59 589.319091796875 NaN 0 589.319091796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 9.38312468134398 0.24977752951804 1 {I|L} 1 8 7.2185 0 0 0.61349 0 0 326.127261424025 734.3857515924436 1060.5130130164687 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.61349 + + 4 + NaN NaN 119668 NaN 20851 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25421 99.594 NaN 83437 35 0 3962.5 0.261 + 23388 RKWQPVAPM 9 46 556.8037109375 NaN 0 556.8037109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _RKWQPVAPM_ ENSG00000179454|ENST00000396128|KLHL28 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92507.8 NaN 20852 4567 25412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25423 99.599 NaN 315530 35 0 31955 0.327 + 15055 LLSYIVQLL 9 64 531.3340406579886 1060.653528382777 2 531.3341674804688 MULTI HCD FTMS 0 0 0 25422 164809.296875 0.36407265496134916 -7 0.12712860107421875 1 Unmodified _LLSYIVQLL_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant 48.345845343767074 0.03388484103555672 1 {I|L}{I|L}[YV]TN{I|L}{I|L}{I|L} 9 -1 + 61.277 0 0 5.7773 5.7773 89.27 0 0 0 3.6001667510732105 44.90227916818927 3.6001667510732105 12.460762528683702 0 0.9247425010840047 0.958607314841775 1.110924374808178 0.3252574989159953 {I|L}{I|L}[YV]TN{I|L}{I|L}{I|L};{I|L}{I|L}[YV]TGG{I|L}{I|L}{I|L} 5.7773;4.6025 -;- 264 NaN NaN 135556.4 NaN 20853 4568 25422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25424 99.603 NaN 380160 35 0 46872 0.261 + 29619 VAPIIFLTI 9 46 493.81810883261306 NaN 0 493.81854248046875 PEAK HCD FTMS 0 0 0 25422 189396.953125 0.31725373965302117 -8 0.159454345703125 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 46.92087301778293 0.05607980621763639 1 T{I|L} 2 -1 23.469 0 0 2.3811 0 0 131.09525919508923 637.3726338847398 768.4678930798291 0 0 0 0 0 0.8252574989159953 0 0.4247425010840047 0 T{I|L} 2.3811 + + 20 + NaN NaN 133973.1 NaN 20854 4568 25422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25425 99.607 NaN 99214 35 0 12785 0.261 -1 MTLGSYCS 8 36 488.6900940392381 NaN 0 488.69012451171875 PEAK HCD FTMS 0 0 0 25422 36479.01953125 0.24903733206979445 -4 0.09462738037109375 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))TLGSYC(Carbamidomethyl (C))S_ ENST00000552269.5_1_12:47604503-47610169:-|nuORF;ENST00000552975.5_1_12:47599848-47610169:-|nuORF 2.302733041254933 0.38822285293237185 1 T 1 -1 8.9794 0 0 0.92062 0 0 685.2746755278919 186.0201815240844 871.2948570519762 0 0 0 0 0 0.5 0 0 0 T 0.92062 + + 1 + NaN NaN 95626.9 NaN 20855 4568 25422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25427 99.612 NaN 5435600 35 0 859290 0.327 + 22062 QGTVDGIVV 9 56 444.24584984658475 886.4771467599695 2 444.24615478515625 MULTI HCD FTMS 0 0 0 25426 86626.765625 0.006686212698736627 -10 0.18243408203125 1 Unmodified _QGTVDGIVV_ ENSG00000157060|ENST00000367547|SHCBP1L;nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L 4.3292370932331545 0.3181982124262546 1 T 1 8 13.896 0 0 1.5675 0 0 189.04343922996514 593.363633207414 782.4070724373792 0 0 0 0 0 0.7302046884880937 0 0.5 0 + T 1.5675 + + 21 + NaN NaN 900423.8 NaN 20856 4569 25426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25428 99.616 NaN 184310 35 0 13025 0.261 + 7723 FYLMQIVEI 9 56 578.3094055838817 1154.6042582345633 2 578.3096313476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FYLMQIVEI_ ENSG00000137975|ENST00000370565|CLCA2 43.77239144664712 0.04802738721622131 1 {I|L}{M(Oxidation (M))|F}YMQ{I|L}VE{I|L} 9 2 + 61.288 0 0 5.3081 5.3081 82.656 0 0 0 55.13448331409903 12.844698741100856 12.844698741100856 1.6378675338813622 0 1.8441876774005248 0 0.805462187404089 0 {I|L}{M(Oxidation (M))|F}YMQ{I|L}VE{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}VE{I|L};{I|L}{M(Oxidation (M))|F}YM[AG]{I|L}VE{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L}VE{I|L};{I|L}{M(Oxidation (M))|F}V{I|L}[YC(Carbamidomethyl (C))]VE{I|L};{I|L}{M(Oxidation (M))|F}V{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}V[YC(Carbamidomethyl (C))]{I|L}VE{I|L} 5.3081;5.1663;4.5106;4.3688;3.9578;3.8042;3.7622 -;-;-;-;-;-;- 145 + NaN NaN 123948.1 NaN 20857 4569 25426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25429 99.619 NaN 290050 35 0 70093 0.261 -1 MVYTHWYTH 9 45 627.2747877328766 1252.535022532553 2 627.2754516601562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))VYTHWYTH_ ENST00000561412.1_1_14:24630521-24631656:+|nuORF 2.0597508629832335 0.3354026079994024 1 C 1 -1 3.0989 0 0 0.24741 0 0 698.3049943116531 448.19721399478755 1146.5022083064407 0 0 0 0 0 0 0 0 0 C 0.24741 - 3 + NaN NaN 123864.8 NaN 20858 4569 25426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25430 99.623 NaN 146990 35 0 18212 0.261 + 17441 LYSELFTLL 9 57 549.8084254327638 NaN 0 549.80810546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LYSELFTLL_ ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A 19.256988751693697 0.19238547928067054 1 {I|L}{M(Oxidation (M))|F}T 3 6 18.812 0 0 1.7139 0 0 492.21992596142746 241.15535913638908 733.3752850978166 0 0 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F}T 1.7139 + + 22 + NaN NaN 106875.1 NaN 20859 4569 25426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25431 99.626 NaN 442380 35 0 86249 0.262 + 22390 QPRGQGTM 8 62 437.7151026481462 873.4156523630925 2 437.71539306640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QPRGQGTM_ ENST00000392973.7_1_16:90075326-90076003:-|nuORF 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F}[W{M(Oxidation (M))|F}] 3 7 2.6761 0 0 0.30639 0 0 375.185210971499 0 375.185210971499 0 0.4575749056067475 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[W{M(Oxidation (M))|F}] 0.30639 - 27 NaN NaN 169628.7 NaN 20860 4569 25426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25432 99.629 NaN 220690 35 0 16660 0.261 + 16872 LYFARRECS 9 59 572.7826061701581 NaN 0 572.7825317382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYFARRECS_ ENSG00000185105|ENST00000409745|MYADML2 5.230669730166228 0.26989974671959066 1 C{I|L}{I|L} 3 9 16.198 0 0 1.4165 0 0 166.08693754445522 645.2711886041624 811.3581261486177 0 0 0 0 0 0 0 0 0 C{I|L}{I|L} 1.4165 - 30 + NaN NaN 115078.4 NaN 20861 4569 25426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25435 99.641 NaN 52362000 35 0 22962000 0.327 + 26524 SVLILASY 8 37 433.254706299722 864.494859666244 2 433.2556457519531 MULTI HCD FTMS 0 0 0 25434 24403568 0.2594274482415857 -6 0.11092376708984375 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 17.034 0 0 1.9704 0 0 596.3857121430632 164.03865991763908 760.4243720607022 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 12 + NaN NaN 942301.3 NaN 20862 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25436 99.645 NaN 5508900 35 0 2997800 0.261 + 21443 PWHAGTYS 8 47 459.71071917828823 NaN 0 459.710693359375 PEAK HCD FTMS 0 0 0 25434 2242650.75 0.342172187321988 -8 0.1465301513671875 2 Unmodified _PWHAGTYS_ ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-5|CD22 9.347437153973935 0.38822285293237185 1 T 1 7 8.8515 0 0 0.96484 0 0 649.2983476809922 164.0385683649047 813.3369160458968 0 0 0 0 0 0.4247425010840047 0 0 0 + T 0.96484 + + 3 + NaN NaN 918769.6 NaN 20863 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25437 99.649 NaN 3239100 35 0 947990 0.261 + 10319 ILPGVVTSP 9 53 441.7681147617369 881.5216765902738 2 441.7682800292969 MULTI HCD FTMS 0 0 0 25434 1026546.5625 0.22569729385499107 -6 0.11092376708984375 3 Unmodified _ILPGVVTSP_ ENSG00000177992|ENST00000325643|SPATA31E1 4.75600775471527 0.31496297302216103 1 MT 2 8 10.445 0 0 1.1849 0 0 53.047741350459724 593.363190440156 646.4109317906158 0 0 0 0 0 0 0 0.4247425010840047 0 MT 1.1849 - 19 + NaN NaN 572182 NaN 20864 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25438 99.652 NaN 1757100 35 0 124380 0.261 + 27479 SYYGPLNLLTF 11 94 644.3346554594897 1286.6547579857793 2 644.3353271484375 MULTI HCD FTMS 0 0 0 25434 775151.0625 0.19851945194723075 10 -0.180419921875 4 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 218.931133096272 1.66202793952465E-29 1 {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 11 0 + 96.028 0 0 7.4634 7.4634 93.852 0 0 0 9.585869049195963 68.81691345950684 9.585869049195963 21.645323446955018 0 3.1791746928241125 0 1.865356566548286 1.4604093769761874 + + {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q[YT]AA{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}EVAA{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]Y{I|L}QN{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YNVAA{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}E[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YN[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]Y{I|L}QGG{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[YN]AA{I|L}{I|L}T{M(Oxidation (M))|F} 7.4634;5.7811;5.7762;5.6636;5.6188;5.4703;5.2651;4.9592;4.9513;4.5439 +;-;-;-;-;-;-;-;-;- + 2906 NaN NaN 354385 NaN 20865 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25439 99.655 NaN 277900 35 0 11696 0.263 -1 PWRFRLLCLLR 11 74 510.63429643857785 1528.8810599159335 3 510.63494873046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _PWRFRLLC(Carbamidomethyl (C))LLR_ ENSG00000167733|ENST00000339423|HSD11B1L;ENST00000578046.1_2_19:5687695-5687953:+|nuORF;ENST00000581423.1_1_19:5687386-5687953:+|nuORF;nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L 0.08335046087909445 0.4185551196980541 1 M 1 -1 5.4846 0 0 0.35873 0 0 917.554411136188 477.2539461725219 1394.80835730871 0 0 0 0 0 0 0 0 0 M 0.35873 - 14 + NaN NaN 139585.2 NaN 20866 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25440 99.659 NaN 191930 35 0 13862 0.261 -1 SCTYLPLLTF 10 60 607.808589345929 1213.602625758658 2 607.8095703125 MULTI HCD FTMS 0 0 0 25434 44498.25 0.2916070988642235 -2 0.029571533203125 6 Carbamidomethyl (C) _SC(Carbamidomethyl (C))TYLPLLTF_ nc|ENSG00000273749|Q7L576-2|CYFIP1 27.628801355627647 0.2527626205058048 1 H{I|L}{I|L}T{M(Oxidation (M))|F} 5 -1 45.662 0 0 3.7625 0 0 584.254198142775 0 584.254198142775 0 31.436755733016852 0 0 0 1.2614393726401687 0 0.3494850021680094 0 H{I|L}{I|L}T{M(Oxidation (M))|F} 3.7625 - 119 NaN NaN 118741.5 NaN 20867 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25441 99.662 NaN 579100 35 0 128690 0.261 + 33229 YFEELITML 9 64 579.7914428710938 NaN 0 579.7914428710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YFEELITML_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 13.90604991867851 0.22786006501039813 1 T{I|L} 2 7 16.281 0 0 1.4065 0 0 262.1392442365248 678.2805880182249 940.4198322547497 0 0 0 0 0 0.8807196863200843 0 0 0 T{I|L} 1.4065 - 9 + NaN NaN 165818.6 NaN 20868 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25442 99.665 NaN 437810 35 0 53998 0.261 + 17551 LYVLQVLTF 9 56 548.3262381456367 1094.6379233580733 2 548.3265380859375 MULTI HCD FTMS 0 0 0 25434 33946.8671875 0.024772777049242536 -5 0.091278076171875 8 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 99.79894945604345 0.0042691968066200965 1 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 86.029 0 0 7.8591 7.8591 91.194 0 0 0 11.298793729568857 67.33201307068605 11.298793729568857 9.208187539523749 0 2.774227503252014 1.2218487496163564 0.3494850021680094 0 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}V[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}][{I|L}A][VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q[{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}[AG][{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}{[NV]|[RG]}V[Y{I|L}];[{I|L}T]{M(Oxidation (M))|F}V[VG][{I|L}A][Y{I|L}];[{I|L}T]{M(Oxidation (M))|F}V[Q{I|L}]V[Y{I|L}] 7.8591;7.0179;5.2398;4.918;2.9265;2.0853;2.0339;0.30717;0.25574 +;-;-;-;-;-;-;-;- + 247 NaN NaN 149814.3 NaN 20869 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25443 99.668 NaN 710110 35 0 372970 0.261 + 7294 FTNTWWRMP 9 62 619.7934171306418 NaN 0 619.7937622070312 PEAK HCD FTMS 0 0 0 25434 39949.86328125 0.5211745199661096 1 -0.038787841796875 9 Unmodified _FTNTWWRMP_ REV__ENST00000444704.5_1_12:6761840-6762457:-|nuORF;REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF 6.723162845929126 0.26266733336404485 1 T 1 -1 8.4113 0 0 0.67966 0 0 147.07090565589402 986.4282770691275 1133.4991827250215 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.67966 + + 11 + NaN NaN 197839 NaN 20870 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25444 99.672 NaN 225740 35 0 23764 0.261 -1 VMSWIIPVF 9 69 554.2994995117188 NaN 0 554.2994995117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _VM(Oxidation (M))SWIIPVF_ ENSG00000103257|ENST00000261622|SLC7A5 30.224811164608877 0.11876709777893199 1 {I|L} 1 -1 16.99 0 0 1.5353 0 0 632.299761863478 358.1768351928683 990.4765970563462 0 0 0 0 0 1 0 0 0 {I|L} 1.5353 + + 20 + NaN NaN 127423.9 NaN 20871 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25445 99.675 NaN 169940 35 0 12013 0.261 + 13790 KYPSPFFVF 9 60 566.299560546875 NaN 0 566.299560546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.1998403495282098 1 V 1 8 11.99 0 0 1.0605 0 0 165.0785847394547 863.4146390924437 1028.4932238318984 0 0 0 0 0 1 0 0 0 + V 1.0605 + + 21 NaN NaN 104376.8 NaN 20872 4571 25434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25447 99.68 NaN 748980 35 0 80324 0.327 + -1 TLFMPGCF 8 65 494.71732835685975 987.4201037805195 2 494.717529296875 MULTI HCD FTMS 0 0 0 25446 91519.2890625 0.79323338207386 -3 0.068359375 1 Carbamidomethyl (C),Oxidation (M) _TLFM(Oxidation (M))PGC(Carbamidomethyl (C))F_ REV__OR4D9|p.N172Mfs*27|1|0.27|ENSG00000172742|chr11:59515423-59515423|C/-|frameshift_variant 9.347437153973935 0.5250182646323369 1 [{I|L}T]{I|L}[WK]{I|L}T 7 -1 18.971 0 0 1.9212 0 0 0 128.86736861528428 128.86736861528428 0.2545373444029053 0 0 0 0 0 1 0.5994850021680094 0 [{I|L}T]{I|L}[WK]{I|L}T 1.9212 - 65 NaN NaN 201870.3 NaN 20873 4572 25446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25448 99.684 NaN 444030 35 0 78980 0.261 + -1 PDGVERCP 8 60 465.2094161125677 NaN 0 465.2074890136719 PEAK HCD FTMS 0 0 0 25446 52446.5703125 0.35571131071255113 -1 0.038787841796875 2 Carbamidomethyl (C) _PDGVERC(Carbamidomethyl (C))P_ REV__ENST00000583444.1_1_17:80187265-80187778:+|nuORF 5.230669730166228 0.38822285293237185 1 G 1 -1 4.6041 0 0 0.49591 0 0 274.99395321947287 593.3613985650999 868.3553517845728 0 0 0 0 0 0 0 0 0 G 0.49591 + + 5 + NaN NaN 147505.5 NaN 20874 4572 25446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25449 99.688 NaN 207080 35 0 18231 0.261 + 15725 LPEYLPFVL 9 52 545.8136596679688 NaN 0 545.8136596679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 11.640296217721598 0.23883959125015683 1 V 1 8 8.9794 0 0 0.82409 0 0 131.09590879135925 856.4236978762999 987.5196066676592 0 0 0 0 0 0.3494850021680094 0 0 0 + V 0.82409 + + 5 + NaN NaN 114028.8 NaN 20875 4572 25446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25450 99.691 NaN 284020 35 0 111120 0.261 -1 WGACLTWT 8 35 497.72612374999915 NaN 0 497.72576904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _WGAC(Carbamidomethyl (C))LTWT_ ENST00000578943.1_1_17:27935867-27936402:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 121949.1 NaN 20876 4572 25446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25451 99.694 NaN 406330 35 0 41645 0.261 + -1 MVHGDDDCSC 10 68 577.6808977671136 1153.3472426010271 2 578.1817626953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VHGDDDC(Carbamidomethyl (C))SC_ REV__ENSG00000101542|ENST00000262717|CDH20 1.6526216038709556 0.46655611578153744 1 EV{I|L}[YC(Carbamidomethyl (C))]V{[QN]|[E{I|L}]|[KN]} 8 -1 11.833 0 0 1.0259 0 0 129.8344797661387 0 129.8344797661387 0 8.337900136414904 0 0 0 0 0 0.3494850021680094 0 EV{I|L}[YC(Carbamidomethyl (C))]V{[QN]|[E{I|L}]|[KN]} 1.0259 - 44 + NaN NaN 147291.2 NaN 20877 4572 25446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25453 99.699 NaN 4874300 35 0 391930 0.327 + 35530 YYGPLNLLTF 10 94 600.8189691942443 1199.6233854552886 2 600.8192749023438 MULTI HCD FTMS 0 0 0 25452 4350613.5 0.7235593802149217 -1 0.01924896240234375 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 185.05004568166646 2.950885128264942E-16 1 YYGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 105.71 0 0 8.812 8.812 90.944 0 0 0 3.7149420467896874 3.7149420467896874 3.7149420467896874 6.941767144350109 0 2.853917193908117 1.6989700043360187 0.3807196863200844 1.6989700043360187 + + YYGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}N{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};YYGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}T{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}GP[DP]N{I|L}{I|L}T{M(Oxidation (M))|F};{I|L}{I|L}TN{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};{I|L}{I|L}NT{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}GG{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}GPYY{I|L}{I|L}T{M(Oxidation (M))|F};{I|L}{I|L}TGG{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F} 8.812;8.2334;7.2266;6.153;6.1409;6.0353;5.8327;5.7618;4.2176;3.5638 +;-;-;-;-;-;-;-;-;- + 1818 NaN NaN 668700.1 NaN 20878 4573 25452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25454 99.704 NaN 7789300 35 0 4033600 0.257 -1 0 73 452.22796409444214 902.4413752556843 2 452.22821044921875 MULTI HCD FTMS 0 0 0 25452 4780099 1 0 0 2 NaN NaN 1 MHM 3 -1 12.945 0 0 1.4345 0 0 73.96672754370441 426.2975034648379 500.2642310085423 0 0 0 0 0 0.3252574989159953 0 0 0 MHM 1.4345 - 25 + NaN NaN 1220991 NaN 20879 4573 25452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25455 99.707 NaN 7578500 35 0 1484900 0.222 + 31214 VVPIGLYS 8 56 424.249651760148 846.4847505870961 2 424.24981689453125 MULTI HCD FTMS 0 0 0 25452 4220217 0.7931695077715338 -4 0.08760833740234375 3 Unmodified _VVPIGLYS_ REV__ENSG00000136002|ENST00000409359|ARHGEF4 5.760428011301431 0.5334459684533844 1 T 1 -1 18.227 0 0 2.1532 0 0 578.3756667154179 164.0390457518079 742.4147124672257 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 20 NaN NaN 931840.8 NaN 20880 4573 25452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25456 99.71 NaN 4335500 35 0 683700 0.261 -1 0 73 455.2365844958468 908.4586160584936 2 455.23699951171875 MULTI HCD FTMS 0 0 0 25452 2857538 0.8642844893318617 -3 0.06502532958984375 4 NaN NaN 1 T 1 -1 17.232 0 0 1.8968 0 0 189.04361159492345 615.3442111114811 804.3878227064044 0 0 0 0 0 1 0 0.3252574989159953 0 T 1.8968 - 21 NaN NaN 728999.2 NaN 20881 4573 25452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25458 99.715 NaN 2711500 35 0 377850 0.327 + 19899 NYFEVPLPYF 10 105 644.8165404714734 1287.6185280097468 2 644.8164672851562 MULTI HCD FTMS 0 0 0 25457 848791.125 0.46390482910410175 -5 0.1028900146484375 1 Unmodified _NYFEVPLPYF_ ENSG00000163840|ENST00000296161|DTX3L 93.16586880292088 0.0007594237434582029 1 [YN]{M(Oxidation (M))|F}EVP{I|L}PY{M(Oxidation (M))|F} 10 0 + 89.05 0 0 6.9158 6.9158 92.172 0 0 0 16.505149978319906 15.964015683995783 15.964015683995783 16.505149978319906 0 2.138210492164445 1.0969100130080565 0.8703715150305282 0.8609243748081781 + + [YN]{M(Oxidation (M))|F}EVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]NEVP{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YNVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]ENVP{I|L}PY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q[YT]P{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]GGEVP{I|L}PY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG][YT]P{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YGGVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]EGGVP{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VYNP{I|L}PY{M(Oxidation (M))|F} 6.9158;5.634;5.1758;5.1308;4.9486;4.2536;3.9997;3.9896;3.9446;3.7892 +;-;-;-;-;-;-;-;-;- + 5254 NaN NaN 497181.1 NaN 20882 4574 25457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25459 99.719 NaN 1114100 35 0 218360 0.264 + 30768 VPPALVYA 8 50 415.2439316579705 828.473310382741 2 415.2439270019531 MULTI HCD FTMS 0 0 0 25457 204015.234375 0.46496274486440775 1 -0.00972747802734375 2 Unmodified _VPPALVYA_ ENSG00000105520|ENST00000688289|PLPPR2;ENST00000588196.1_1_19:11468409-11470405:+|nuORF;nc|ENSG00000105520|Q96GM1-2|PLPPR2;nc|ENSG00000105520|Q96GM1|PLPPR2 0.7936320650641473 0.540814922690045 1 T 1 8 19.292 0 0 2.3286 0 0 167.06163222480626 557.3412967931504 724.4029290179567 0 0 0 0 0 1 0 0.3807196863200844 0 T 2.3286 - 7 NaN NaN 243989.9 NaN 20883 4574 25457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25461 99.725 NaN 31902000 35 0 5995600 0.327 + 26525 SVLILASY 8 78 433.254706299722 864.494859666244 2 433.2569580078125 MULTI HCD FTMS 0 0 0 25460 14487464 0.1540121435116306 -2 0.0250091552734375 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 17.034 0 0 1.9704 0 0 596.384724036188 164.03925501041252 760.4239790466005 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 20 + NaN NaN 4900548 NaN 20884 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25462 99.729 NaN 6169100 35 0 1167000 0.261 + 31215 VVPIGLYS 8 60 424.249651760148 846.4847505870961 2 424.25140380859375 MULTI HCD FTMS 0 0 0 25460 1101468.375 0.20701568872516773 -2 0.0250091552734375 2 Unmodified _VVPIGLYS_ REV__ENSG00000136002|ENST00000409359|ARHGEF4 5.760428011301431 0.5334459684533844 1 T 1 -1 18.227 0 0 2.1532 0 0 578.3757099917532 164.0390672648587 742.4147772566118 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 21 NaN NaN 1005895.9 NaN 20885 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25463 99.733 NaN 883850 35 0 96932 0.261 + 14177 LAIPVFLTL 9 59 493.81810883261306 NaN 0 493.8186950683594 PEAK HCD FTMS 0 0 0 25460 154976.125 0.25959633669890414 -2 0.0250091552734375 3 Unmodified _LAIPVFLTL_ ENSG00000134490|ENST00000383233|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;nc|ENSG00000134490|Q24JQ0-2|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241 56.541270873467816 0.031888241726281685 1 PV[{I|L}A]{I|L}E 6 6 24.385 0 0 2.4741 0 0 131.09530833518141 229.13393579654533 360.2292441317268 0 0 0 0 0 0.9247425010840047 0 0.9247425010840047 0 PV[{I|L}A]{I|L}E 2.4741 - 60 + NaN NaN 224692.5 NaN 20886 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25464 99.736 NaN 713950 35 0 81416 0.261 + 11540 IYSINLLLI 9 69 531.3340406579886 1060.653528382777 2 531.3349609375 MULTI HCD FTMS 0 0 0 25460 135360.046875 0.29901766815285385 -1 0.00972747802734375 4 Unmodified _IYSINLLLI_ ENSG00000111371|ENST00000398637|SLC38A1 78.7280429016045 0.006263961847259105 1 [Y{I|L}]{[TV]|[{I|L}S]}N{I|L}{I|L}{I|L}{I|L} 9 0 + 65.573 0 0 6.1823 6.1823 88.233 0 0 0 12.592298913831165 47.19126414008825 12.592298913831165 9.208187539523749 0 2.2134679910804405 0 1.778659694992122 0 + + [Y{I|L}]{[TV]|[{I|L}S]}N{I|L}{I|L}{I|L}{I|L};[Y{I|L}]{[TV]|[{I|L}S]}GG{I|L}{I|L}{I|L}{I|L};[Y{I|L}]{[TV]|[{I|L}S]}{I|L}N{I|L}{I|L}{I|L};[Y{I|L}]{[TV]|[{I|L}S]}{I|L}GG{I|L}{I|L}{I|L} 6.1823;5.3142;5.0025;4.1344 +;-;-;- + 303 NaN NaN 193142.2 NaN 20887 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25465 99.739 NaN 1072900 35 0 491500 0.262 -1 MLLFAGGK 8 70 426.7363419742961 851.4581310153923 2 427.2251281738281 MULTI HCD FTMS 0 0 0 25460 3860.41064453125 0.21622895150309915 1 -0.03989410400390625 5 Oxidation (M) _M(Oxidation (M))LLFAGGK_ ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF 2.8892196856762586 0.5377058178582064 1 T 1 -1 6.9897 0 0 0.82091 0 0 583.348615735183 164.0388125055297 747.3874282407127 0 0 0 0 0 0.5 0 0 0 T 0.82091 - 36 + NaN NaN 243658.2 NaN 20888 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25466 99.743 NaN 271260 35 0 16687 0.261 + 17550 LYVLQTLPNG 10 66 559.318115234375 NaN 0 559.318115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYVLQTLPNG_ ENSG00000118058|ENST00000534358|KMT2A;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A 24.990960013464015 0.24020601536510064 1 V{I|L}QV{I|L}V 6 6 32.802 0 0 2.9376 0 0 276.15019351755933 186.02057825260002 462.1707717701594 0 0 0 0 0 2.2614393726401687 0 0 0 V{I|L}QV{I|L}V 2.9376 - 79 + NaN NaN 127108.2 NaN 20889 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25467 99.746 NaN 530680 35 0 33263 0.261 + 16989 LYIINLIF 8 70 504.8098449707031 NaN 0 504.8098449707031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LYIINLIF_ REV__ENST00000302754.5_1_19:12903636-12903888:+|nuORF 9.347437153973935 0.38822285293237185 1 PVA{I|L} 4 -1 13.409 0 0 1.3308 0 0 113.08702345642037 511.2547701471312 624.3417936035515 0 0 0 0 0 0.28872548999643577 0 0 0 PVA{I|L} 1.3308 - 20 + NaN NaN 159378 NaN 20890 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25468 99.749 NaN 123500 35 0 9670.4 0.261 + 33979 YLTYVAKIL 9 43 542.325927734375 NaN 0 542.325927734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YLTYVAKIL_ REV__ENSG00000136891|ENST00000374902|TEX10;REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 19.256988751693697 0.19238547928067054 1 {I|L} 1 -1 4.1639 0 0 0.3846 0 0 131.0966719709 835.4346407525999 966.5313127234999 0 0 0 0 0 0.3054621874040891 0 0 0 {I|L} 0.3846 + + 1 + NaN NaN 101385.5 NaN 20891 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25469 99.753 NaN 179930 35 0 18749 0.261 -1 DYMNLLGMIF 10 53 624.786865234375 NaN 0 624.786865234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 20.41453444215458 0.2772770459383961 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L} 4 -1 19.45 0 0 1.5591 0 0 165.08321344552502 649.2289891942665 814.3122026397916 0 0 0 0 0 1.3252574989159953 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L} 1.5591 + + 25 + NaN NaN 118607.1 NaN 20892 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25470 99.756 NaN 462390 35 0 86111 0.262 + -1 LGIIVTVMY 9 56 512.7914400281935 1023.568327123187 2 512.8102416992188 MULTI HCD FTMS 0 0 0 25460 10902.150390625 0.08576190928632042 -1 0.00972747802734375 10 Oxidation (M) _LGIIVTVM(Oxidation (M))Y_ REV__ENSG00000110436|ENST00000278379|SLC1A2;REV__nc|ENSG00000110436|P43004-2|SLC1A2;REV__nc|ENSG00000110436|P43004-3|SLC1A2 7.910154910731844 0.2910521888787154 1 D{I|L} 2 -1 20.969 0 0 2.0486 0 0 0 792.4329358050772 792.4329358050772 4.515449934959719 0 0 0 0 0 0 0 0 D{I|L} 2.0486 - 17 + NaN NaN 148789 NaN 20893 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25471 99.759 NaN 185330 35 0 14246 0.261 -1 LQIPRGTKRP 10 63 604.3666039090739 1206.7186548849477 2 604.3673095703125 MULTI HCD FTMS 0 0 0 25460 17958.787109375 0.051678870770267 -8 0.15807342529296875 11 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LQIPRGTKRP_ ENST00000525144.6_1_11:126870481-126870580:-|nuORF 2.9952420565917617 0.4594494122822477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 107681.3 NaN 20894 4575 25460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25473 99.764 NaN 10795000 35 0 1829000 0.327 + 28327 TNAVQILE 8 62 444.24584984658475 886.4771467599695 2 444.2450256347656 MULTI HCD FTMS 0 0 0 25472 9983275 0.7705505290239779 -3 0.06490325927734375 1 Unmodified _TNAVQILE_ ENSG00000197563|ENST00000640252|PIGN 4.3292370932331545 0.5355693454741696 1 T 1 7 15.106 0 0 1.704 0 0 618.3676827000661 164.03888879947502 782.4065714995411 0 0 0 0 0 0.7614393726401688 0 0.28872548999643577 0 + T 1.704 + + 31 + NaN NaN 1709147.5 NaN 20895 4576 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25474 99.768 NaN 1135200 35 0 220170 0.261 + 22363 QPNGTVRC 8 79 437.7151026481462 873.4156523630925 2 437.7137756347656 MULTI HCD FTMS 0 0 0 25472 531003.8125 1 0 0 2 Unmodified _QPNGTVRC_ REV__ENSG00000154134|ENST00000397801|ROBO3;REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 4.75600775471527 0.5349361699807423 1 {[QN]|[E{I|L}]|[KN]}N 3 -1 5.0617 0 0 0.57953 0 0 0 514.2119845025999 514.2119845025999 2.2974588320797213 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}N 0.57953 - 37 + NaN NaN 248852.8 NaN 20896 4576 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25475 99.772 NaN 1572000 35 0 317250 0.261 + 21185 PPVLSVAF 8 67 415.2439316579705 828.473310382741 2 415.2452087402344 MULTI HCD FTMS 0 0 0 25472 99174.5625 0.22602467380434693 3 -0.03862762451171875 3 Unmodified _PPVLSVAF_ ENST00000549379.5_1_12:62653800-62653896:-|nuORF 2.8892196856762586 0.5377058178582064 1 T 1 8 19.292 0 0 2.3286 0 0 167.06160170722814 557.3412429076335 724.4028446148616 0 0 0 0 0 1 0 0.3807196863200844 0 T 2.3286 - 13 NaN NaN 316495.3 NaN 20897 4576 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25476 99.775 NaN 219210 35 0 23534 0.261 + -1 GNECSSDSY 9 55 509.67352294921875 NaN 0 509.67352294921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _GNEC(Carbamidomethyl (C))SSDSY_ REV__ENSG00000113916|ENST00000406870|BCL6 3.944395688203298 0.27613285122220627 1 P{I|L}N 3 -1 9.0854 0 0 0.89306 0 0 99.88348574043125 590.2625826471311 690.1460683875624 0 0 0 0 0 0 0 0 0.3054621874040891 P{I|L}N 0.89306 - 13 + NaN NaN 112859.2 NaN 20898 4576 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25477 99.779 NaN 258820 35 0 67150 0.261 -1 MVCHEGCTP 9 54 525.1964721679688 NaN 0 525.1964721679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VC(Carbamidomethyl (C))HEGCTP_ ENST00000305883.5_1_2:10193335-10193581:+|nuORF 4.75600775471527 0.27219989241163056 1 W 1 -1 6.9897 0 0 0.66672 0 0 243.93882411933743 615.3458614573299 859.2846855766672 0 0 0 0 0 0 0 0 0 W 0.66672 - 13 + NaN NaN 118506.2 NaN 20899 4576 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25479 99.783 NaN 59369000 35 0 19724000 0.327 + 26526 SVLILASY 8 66 433.254706299722 864.494859666244 2 433.2550048828125 MULTI HCD FTMS 0 0 0 25478 94067024 1 0 0 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 17.034 0 0 1.9704 0 0 596.3852571474189 164.03896509342033 760.4242222408392 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 18 + NaN NaN 2806185.2 NaN 20900 4577 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25480 99.788 NaN 7893200 35 0 4320500 0.261 + 21444 PWHAGTYS 8 52 459.71071917828823 NaN 0 459.7104797363281 PEAK HCD FTMS 0 0 0 25478 5789764 0.8833725946664244 -2 0.05916595458984375 2 Unmodified _PWHAGTYS_ ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-5|CD22 5.230669730166228 0.38822285293237185 1 T 1 7 8.8515 0 0 0.96484 0 0 649.2977068118515 164.0386904352172 813.3363972470687 0 0 0 0 0 0.4247425010840047 0 0 0 + T 0.96484 + + 5 + NaN NaN 1277041.1 NaN 20901 4577 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25481 99.791 NaN 3759400 35 0 1147500 0.261 + 10320 ILPGVVTSP 9 55 441.7681147617369 881.5216765902738 2 441.76812744140625 MULTI HCD FTMS 0 0 0 25478 4548333.5 1 0 0 3 Unmodified _ILPGVVTSP_ ENSG00000177992|ENST00000325643|SPATA31E1 4.75600775471527 0.31496297302216103 1 MT 2 8 10.445 0 0 1.1849 0 0 53.04766342616228 593.3632627392682 646.4109261654305 0 0 0 0 0 0 0 0.4247425010840047 0 MT 1.1849 - 18 + NaN NaN 648444.2 NaN 20902 4577 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25483 99.796 NaN 1575500 35 0 239790 0.327 + 17552 LYVLQVLTF 9 77 548.3262381456367 1094.6379233580733 2 548.3265380859375 MULTI HCD FTMS 0 0 0 25482 560221.9375 0.4088227959041968 2 -0.0188446044921875 1 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 181.3275282027936 9.859558525874733E-13 1 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 110.38 0 0 10.083 10.083 93.865 0 0 0 1.764523572165814 1.764523572165814 1.764523572165814 9.208187539523749 0 3.274227503252014 1.3979400086720375 2.205112052208703 0 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}V[VG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]V{M(Oxidation (M))|F}[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}][{I|L}A][VG]V{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}V[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q[{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}[AG][{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}{[NV]|[RG]}V[Y{I|L}];[{I|L}T]{M(Oxidation (M))|F}VQ{I|L}V[Y{I|L}] 10.083;9.2422;7.0889;6.8862;5.9948;4.9256;4.4432;3.2542;3.2027;3.0849 +;-;-;-;-;-;-;-;-;- + 540 + NaN NaN 323790.5 NaN 20903 4578 25482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25485 99.802 NaN 11968000 35 0 1940600 0.327 + 8268 GTQVEQLL 8 56 444.24584984658475 886.4771467599695 2 444.2462158203125 MULTI HCD FTMS 0 0 0 25484 12956029 1 0 0 1 Unmodified _GTQVEQLL_ ENSG00000156398|ENST00000369893|SFXN2;ENST00000602287.5_1_10:104486384-104488287:+|nuORF 4.3292370932331545 0.5355693454741696 1 T 1 7 13.896 0 0 1.5675 0 0 189.04341367686578 593.3636627884331 782.4070764652988 0 0 0 0 0 0.7302046884880937 0 0.5 0 + T 1.5675 + + 17 + NaN NaN 1097284.8 NaN 20904 4579 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25486 99.807 NaN 1248800 35 0 248970 0.261 -1 0 60 415.23849697279957 414.2312205061996 1 415.2449645996094 MULTI HCD FTMS 0 0 0 25484 64646.21484375 0.5166236152996523 -1 0.00677490234375 2 NaN NaN 1 T 1 -1 9.2917 0 0 2.2431 0 0 146.12201137709644 164.03867517642814 310.16068655352456 0 0 0 0 0 0 0 0.3807196863200844 0 T 2.2431 - 6 + NaN NaN 267289.9 NaN 20905 4579 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25487 99.81 NaN 678370 35 0 144130 0.261 + 22391 QPRGQGTM 8 62 437.7151026481462 873.4156523630925 2 437.71533203125 MULTI HCD FTMS 0 0 0 25484 322031.40625 0.6064578043872331 3 -0.03423309326171875 3 Unmodified _QPRGQGTM_ ENST00000392973.7_1_16:90075326-90076003:-|nuORF 4.75600775471527 0.5349361699807423 1 V 1 8 2.4743 0 0 0.28328 0 0 330.2520777606505 441.0770357721313 771.3291135327818 0 0 0 0 0 0 0 0 0 V 0.28328 - 33 + NaN NaN 187333.4 NaN 20906 4579 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25489 99.815 NaN 350690 35 0 28453 0.326 + 21288 PRTLALRERL 10 81 408.92215033163814 1223.7446215951145 3 408.9226379394531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PRTLALRERL_ ENSG00000135451|ENST00000257909|TROAP 5.40270961882225 0.4467063037482923 1 {M(Oxidation (M))|F} 1 10 13.495 0 0 1.1028 0 0 1058.66586900898 0 1058.66586900898 0 4.030899869919438 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1028 - 54 + NaN NaN 145411.8 NaN 20907 4580 25488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25491 99.821 NaN 4004000 35 0 341180 0.327 + 35531 YYGPLNLLTF 10 74 600.8189691942443 1199.6233854552886 2 600.8192138671875 MULTI HCD FTMS 0 0 0 25490 2814887 0.4681495823738515 7 -0.10178375244140625 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 155.02607137521346 8.105858163714844E-08 1 YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 86.15 0 0 7.1814 7.1814 91.766 0 0 0 51.08857830256703 25.566884185923655 25.566884185923655 12.417114474659215 0 2.6989700043360187 1.6989700043360187 2.004432191740108 0.3252574989159953 + + YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P]GG{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P][{I|L}V]QT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HK]NYC{I|L}[VP] 7.1814;6.1464;3.6576;0.78586 +;-;-;- + 450 + NaN NaN 360220.6 NaN 20908 4581 25490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25492 99.825 NaN 6657300 35 0 3430200 0.258 -1 0 69 452.22796409444214 902.4413752556843 2 452.2281799316406 MULTI HCD FTMS 0 0 0 25490 3072714.25 0.6428139354435964 8 -0.13655853271484375 2 NaN NaN 1 HM 2 -1 14.233 0 0 1.5771 0 0 205.00934570292435 426.2979294799605 631.3072751828848 0 0 0 0 0 0.5649093276264391 0 0 0 HM 1.5771 - 40 + NaN NaN 1050645 NaN 20909 4581 25490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25493 99.829 NaN 524210 35 0 152620 0.261 + 22501 QRRQARLP 8 56 512.8093233020243 1023.6040936708486 2 512.8093872070312 MULTI HCD FTMS 0 0 0 25490 159843.703125 0.32853921786318674 -6 0.09737396240234375 3 Unmodified _QRRQARLP_ REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF 5.230669730166228 0.5342319408533849 1 {I|L}P 2 -1 24.464 0 0 2.39 0 0 795.4540930605735 0 795.4540930605735 0 21.365006360318688 0 0 0 0.3494850021680094 0 0 0 {I|L}P 2.39 + + 12 NaN NaN 167027.9 NaN 20910 4581 25490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25494 99.832 NaN 224970 35 0 37158 0.261 + 7510 FWPPYVELL 9 46 582.3102572611805 1162.6059615891609 2 582.3106079101562 MULTI HCD FTMS 0 0 0 25490 41615.73046875 0.20056317415231137 1 -0.015380859375 4 Unmodified _FWPPYVELL_ ENSG00000123219|ENST00000396679|CENPK 42.09456458481378 0.05572955244001856 1 VE{I|L}{I|L} 4 5 46.938 0 0 4.0373 0 0 690.3175556009654 0 690.3175556009654 0 32.33410649039925 0 0 0 1.5 0 0 0 + VE{I|L}{I|L} 4.0373 + + 115 NaN NaN 115806.8 NaN 20911 4581 25490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25496 99.837 NaN 6502300 35 0 1320700 0.327 + 31216 VVPIGLYS 8 52 424.249651760148 846.4847505870961 2 424.24993896484375 MULTI HCD FTMS 0 0 0 25495 3397176.25 0.6384829533707971 5 -0.07355499267578125 1 Unmodified _VVPIGLYS_ REV__ENSG00000136002|ENST00000409359|ARHGEF4 5.760428011301431 0.5334459684533844 1 T 1 -1 18.227 0 0 2.1532 0 0 578.3758301267436 164.03878010984036 742.4146102365839 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 18 NaN NaN 822978.2 NaN 20912 4582 25495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25497 99.841 NaN 2978700 35 0 513100 0.261 -1 0 63 455.2365844958468 908.4586160584936 2 455.2370300292969 MULTI HCD FTMS 0 0 0 25495 1590230.75 0.48097760088704805 6 -0.08640289306640625 2 NaN NaN 1 T 1 -1 17.232 0 0 1.8968 0 0 189.0436726300797 615.3444857696842 804.3881583997638 0 0 0 0 0 1 0 0.3252574989159953 0 T 1.8968 - 19 NaN NaN 533469.6 NaN 20913 4582 25495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25498 99.845 NaN 468580 35 0 46750 0.261 + 13195 KYLTRMIKR 9 65 403.5810747800307 1207.7213949402922 3 403.58160400390625 MULTI HCD FTMS 0 0 0 25495 48105.98828125 0.25580814268302726 1 -0.019287109375 3 Unmodified _KYLTRMIKR_ REV__ENSG00000135355|ENST00000369352|GJA10;REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant 1.0714618166137932 0.3428945748894048 1 P 1 -1 3.9794 0 0 0.3295 0 0 987.5902131549391 120.05049310855702 1107.6407062634962 0 0 0 0 0 0 0 0 0 P 0.3295 - 8 + NaN NaN 161350.4 NaN 20914 4582 25495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25499 99.848 NaN 204120 35 0 37135 0.261 + -1 VMMFVFCITM 10 48 627.2751752974236 NaN 0 627.2745361328125 PEAK HCD FTMS 0 0 0 25495 35658.54296875 0.2504706723958789 1 -0.019287109375 4 2 Oxidation (M) _VM(Oxidation (M))M(Oxidation (M))FVFCITM_ REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116037.7 NaN 20915 4582 25495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25500 99.851 NaN 199850 35 0 10904 0.262 + 25835 SLVFWRRKWLR 11 60 516.3098180505909 1545.9076247519727 3 516.3099975585938 MULTI HCD FTMS 0 0 0 25495 81473.046875 0.7417926093383975 1 -0.019287109375 5 Unmodified _SLVFWRRKWLR_ REV__ENSG00000105559|ENST00000263265|PLEKHA4;REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 0.09484139111097674 0.41850472438158626 1 P 1 -1 7.7866 0 0 0.50369 0 0 869.5229334451352 576.3098238580686 1445.8327573032038 0 0 0 0 0 0.3807196863200844 0 0 0 P 0.50369 - 16 + NaN NaN 114820 NaN 20916 4582 25495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25502 99.856 NaN 2065200 35 0 415830 0.327 + 19900 NYFEVPLPYF 10 93 644.8165404714734 1287.6185280097468 2 644.81689453125 MULTI HCD FTMS 0 0 0 25501 881987.6875 0.48204833367173744 4 -0.05426788330078125 1 Unmodified _NYFEVPLPYF_ ENSG00000163840|ENST00000296161|DTX3L 103.41943736471063 5.9292398775303266E-05 1 [YN]{M(Oxidation (M))|F}EVP{I|L}PY{M(Oxidation (M))|F} 10 0 + 103.82 0 0 8.0628 8.0628 94.598 0 0 0 20.268024924119672 16.53212513775344 16.53212513775344 20.268024924119672 0 2.138210492164445 1.3010299956639813 0.8882104921644451 1.0189301784845295 + + [YN]{M(Oxidation (M))|F}EVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]NEVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]ENVP{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YNVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]GGEVP{I|L}PY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]EGGVP{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YGGVP{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[YN]P{I|L}PY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VWTS{I|L}PY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}Y{[HG]|PP}AA{I|L}PY{M(Oxidation (M))|F} 8.0628;6.4888;5.894;5.8542;4.9857;4.6151;4.5754;4.1485;3.6778;2.777 +;-;-;-;-;-;-;-;-;- + 2270 NaN NaN 402237.7 NaN 20917 4583 25501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25503 99.861 NaN 250040 35 0 32878 0.261 + 22893 QYPVFPWVL 9 51 574.8107503305832 1147.6069477279664 2 574.8114624023438 MULTI HCD FTMS 0 0 0 25501 68554.390625 0.41069903947024416 -1 0.019287109375 2 Unmodified _QYPVFPWVL_ ENSG00000128815|ENST00000325239|WDFY4;ENSG00000160796|ENST00000450053|NBEAL2;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000128815|Q6ZS81-4|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}[WP]V{I|L} 5 4 29.08 0 0 2.534 0 0 487.24363906074376 0 487.24363906074376 0 27.971062485323515 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}[WP]V{I|L} 2.534 + + 18 NaN NaN 126088.1 NaN 20918 4583 25501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25505 99.865 NaN 704330 35 0 64267 0.327 + 10643 IPVAIFITL 9 59 493.81810883261306 NaN 0 493.8180847167969 PEAK HCD FTMS 0 0 0 25504 267831.375 0.44863712912573117 7 -0.14495086669921875 1 Unmodified _IPVAIFITL_ ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENST00000488002.5_1_3:179322588-179334847:+|nuORF 63.562846038646086 0.01869078338221978 1 T{I|L} 2 7 23.271 0 0 2.3611 0 0 131.09499730996532 637.3714754012796 768.4664727112449 0 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 + T{I|L} 2.3611 + + 23 + NaN NaN 190996.8 NaN 20919 4584 25504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25506 99.87 NaN 386500 35 0 49851 0.261 + 16484 LSYLNLLLL 9 61 531.3340406579886 1060.653528382777 2 531.3341064453125 MULTI HCD FTMS 0 0 0 25504 218095.34375 0.48178441592402177 8 -0.16455078125 2 Unmodified _LSYLNLLLL_ REV__ENSG00000144935|ENST00000476941|TRPC1;REV__ENST00000480101.1_1_3:142499823-142503920:+|nuORF;REV__nc|ENSG00000144935|P48995-2|TRPC1 56.17704186161178 0.022929533404884107 1 N{I|L}{I|L}{I|L}{I|L} 5 -1 57.519 0 0 5.4229 0 0 476.2646656720719 0 476.2646656720719 0 49.5597718523608 0 0 0 1.9247425010840047 0 0 0.3807196863200844 N{I|L}{I|L}{I|L}{I|L} 5.4229 + + 132 NaN NaN 143670.3 NaN 20920 4584 25504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25507 99.873 NaN 161900 35 0 20419 0.261 -1 CLLQMWFI 8 57 555.775733578208 1109.536914223216 2 556.2786254882812 MULTI HCD FTMS 0 0 0 25504 122056.296875 0.5288748739102149 -13 0.22443389892578125 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLQMWFI_ ENSG00000182070|ENST00000380367|OR52A1 11.114462752807354 0.5120171699125776 1 {I|L}WDHKT{M(Oxidation (M))|F} 7 -1 24.634 0 0 2.2202 0 0 164.07417567329838 0 164.07417567329838 0 17.643907616343245 0 0 0 0 0 0 0 {I|L}WDHKT{M(Oxidation (M))|F} 2.2202 - 89 + NaN NaN 108260.4 NaN 20921 4584 25504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25508 99.877 NaN 114750 35 0 11209 0.261 + 6295 FPFPFTPYSI 10 43 608.3082422899643 1214.6019316467284 2 608.3095092773438 MULTI HCD FTMS 0 0 0 25504 102437.9140625 1 0 0 4 Unmodified _FPFPFTPYSI_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8 24.020572477871973 0.2864316864133941 1 T{[QG]|[NA]}{M(Oxidation (M))|F}VW 6 9 39.698 0 0 3.2684 0 0 478.24397475410314 0 478.24397475410314 0 14.921525057367404 0 0 0 1.7302046884880937 0 0 0 T{[QG]|[NA]}{M(Oxidation (M))|F}VW 3.2684 - 83 NaN NaN 110740.7 NaN 20922 4584 25504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25509 99.88 NaN 306750 35 0 74176 0.261 + 32699 WPLPPDWPL 9 65 560.7949659028751 1119.5753788725501 2 560.79541015625 MULTI HCD FTMS 0 0 0 25504 98068.609375 0.7701739158124488 3 -0.044921875 5 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 21.74664581756881 0.17247014374749275 1 WP{I|L} 3 6 35.005 0 0 3.1266 0 0 705.3467659912657 0 705.3467659912657 0 27.658715643802765 0 0 0 0.8807196863200843 0 0 0 + WP{I|L} 3.1266 + + 70 NaN NaN 126769.2 NaN 20923 4584 25504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25511 99.885 NaN 120020 35 0 11716 0.327 -1 DYMNLLGMIF 10 47 624.7856957158663 1247.5568384985324 2 624.7862548828125 MULTI HCD FTMS 0 0 0 25510 46208.0390625 0.21043970959989042 4 -0.073394775390625 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 20.41453444215458 0.3201613495159799 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 36.466 0 0 2.923 0 0 652.2545643537125 0 652.2545643537125 0 32.90939380995489 0 0 0 1.4247425010840047 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.923 + + 37 NaN NaN 116489 NaN 20924 4585 25510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25513 99.891 NaN 243000 35 0 19903 0.327 + 23721 RQRPLSILPQ 10 67 604.3666039090739 1206.7186548849477 2 604.3670043945312 MULTI HCD FTMS 0 0 0 25512 248910.765625 0.7162748359184855 2 -0.03170013427734375 1 Unmodified _RQRPLSILPQ_ REV__BRINP3|p.I513Ffs*25|1|0.16|ENSG00000162670|chr1:190098783-190098783|G/-|frameshift_variant;REV__BRINP3|p.K503Tfs*12|1|0.16|ENSG00000162670|chr1:190098801-190098811|TCTGTCCGTTT/-|frameshift_variant;REV__ENSG00000162670|ENST00000367462|BRINP3;REV__nc|ENSG00000162670|Q76B58-2|BRINP3 5.731851221503515 0.44496410492002586 1 P 1 -1 4.5205 0 0 0.37461 0 0 572.3394567421727 534.2970675104124 1106.636524252585 0 0 0 0 0 0.3807196863200844 0 0 0 P 0.37461 + + 6 + NaN NaN 130790.5 NaN 20925 4586 25512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25514 99.896 NaN 530150 35 0 54237 0.264 + 19513 NRLVLLMPRP 10 71 403.5810747800307 1207.7213949402922 3 403.5816955566406 MULTI HCD FTMS 0 0 0 25512 135967.65625 0.7230208723065241 5 -0.1188812255859375 2 Unmodified _NRLVLLMPRP_ REV__ENSG00000173137|ENST00000308860|ADCK5;REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF 0.6976657623105312 0.47161084886498755 1 S 1 -1 11.99 0 0 0.99275 0 0 133.0817591412943 984.5687791275152 1117.6505382688094 0 0 0 0 0 0.5 0 0 0 S 0.99275 - 15 + NaN NaN 166458 NaN 20926 4586 25512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25515 99.899 NaN 179140 35 0 23502 0.261 -1 MTLGSYCS 8 44 488.6904602050781 NaN 0 488.6904602050781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))TLGSYC(Carbamidomethyl (C))S_ ENST00000552269.5_1_12:47604503-47610169:-|nuORF;ENST00000552975.5_1_12:47599848-47610169:-|nuORF 2.302733041254933 0.38822285293237185 1 R 1 -1 11.237 0 0 1.1521 0 0 134.00006630683748 682.251185286748 816.2512515935855 0 0 0 0 0 0.4247425010840047 0 0 0 R 1.1521 - 2 + NaN NaN 121094.2 NaN 20927 4586 25512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25516 99.902 NaN 138160 35 0 11687 0.261 + 23303 RIGRRCCCS 9 37 527.2464252523641 NaN 0 527.1234130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RIGRRCCCS_ REV__ENST00000412397.2_1_1:998483-999668:+|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105255.1 NaN 20928 4586 25512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25517 99.906 NaN 152540 35 0 17994 0.261 + 33720 YLCWVLFF 8 50 545.77655701977 1089.53856110634 2 545.7771606445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLCWVLFF_ ENST00000523606.1_1_5:162945344-162945401:+|nuORF 32.45364647766026 0.3278715449852315 1 V{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 4 37.083 0 0 3.4036 0 0 565.2398548810562 0 565.2398548810562 0 16.11432819416656 0 0 0 1.1421590589602533 0 0 0 + V{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4036 + + 23 NaN NaN 110502.2 NaN 20929 4586 25512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25519 99.911 NaN 101920 35 0 9235.7 0.327 + 13496 KYPENFFLL 9 53 585.8133700194857 1169.6121871057712 2 585.8135375976562 MULTI HCD FTMS 0 0 0 25518 44396.609375 0.5620562670865267 5 -0.11962890625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.445 0 0 2.603 0 0 778.3631458966812 0 778.3631458966812 0 13.99166239860314 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.603 + + 31 NaN NaN 100589.9 NaN 20930 4587 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25520 99.915 NaN 170270 35 0 11294 0.261 + 13751 KYPSPFFVF 9 61 566.2976324581632 1130.5807119831263 2 566.2976684570312 MULTI HCD FTMS 0 0 0 25518 36566.3046875 0.5904508051750403 -13 0.19603729248046875 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 1 {I|L}C[KC][NP]V{M(Oxidation (M))|F} 8 6 27.925 0 0 2.4699 0 0 208.15736586738439 0 208.15736586738439 0 13.945247061488857 0 0 0 1.0044321917401078 0 0 0 {I|L}C[KC][NP]V{M(Oxidation (M))|F} 2.4699 - 69 NaN NaN 119586 NaN 20931 4587 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25521 99.919 NaN 127270 35 0 42590 0.261 + 32587 WKRGSRFG 8 37 497.27286893629224 NaN 0 497.7253723144531 PEAK HCD FTMS 0 0 0 25518 6173.24462890625 0.3637937956303096 -8 0.1077880859375 3 Unmodified _WKRGSRFG_ ENST00000393537.4_1_2:97513863-97513980:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98177.2 NaN 20932 4587 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25523 99.923 NaN 19166000 35 0 8293500 0.327 + 26527 SVLILASY 8 47 433.254706299722 864.494859666244 2 433.2555847167969 MULTI HCD FTMS 0 0 0 25522 13790038 0.14659800441863666 11 -0.24700927734375 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 17.034 0 0 1.9704 0 0 596.3856702544971 164.0387362115844 760.4244064660815 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 12 + NaN NaN 1000434.2 NaN 20933 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25524 99.928 NaN 2634800 35 0 1410800 0.261 + 21445 PWHAGTYS 8 51 459.71071917828823 NaN 0 459.710693359375 PEAK HCD FTMS 0 0 0 25522 1064054 0.16234792002665177 9 -0.20456695556640625 2 Unmodified _PWHAGTYS_ ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-5|CD22 9.347437153973935 0.38822285293237185 1 T 1 7 5.2165 0 0 0.56862 0 0 649.2982256106797 164.0386904352172 813.3369160458968 0 0 0 0 0 0.4247425010840047 0 0 0 + T 0.56862 + + 4 + NaN NaN 477364.9 NaN 20934 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25525 99.931 NaN 1054700 35 0 249780 0.261 + 10321 ILPGVVTSP 9 55 441.7681147617369 881.5216765902738 2 441.7684020996094 MULTI HCD FTMS 0 0 0 25522 628098.375 0.13809417779061275 11 -0.24700927734375 3 Unmodified _ILPGVVTSP_ ENSG00000177992|ENST00000325643|SPATA31E1 4.75600775471527 0.31496297302216103 1 T[PS] 3 6 10.062 0 0 1.1414 0 0 578.3755556810202 0 578.3755556810202 0 1.1092437480817807 0 0 0 0 0 0.5 0 + T[PS] 1.1414 + + 18 NaN NaN 239732.8 NaN 20935 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25526 99.935 NaN 478600 35 0 72566 0.261 + 17553 LYVLQVLTF 9 64 548.3262381456367 1094.6379233580733 2 548.326416015625 MULTI HCD FTMS 0 0 0 25522 232478.921875 0.16965184057921837 12 -0.26657867431640625 4 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 136.33342141710068 0.00022087650154924235 1 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 100.42 0 0 9.1735 9.1735 95.849 0 0 0 19.621892823592972 63.303206620479806 19.621892823592972 17.26280941356464 0 2.774227503252014 1.3979400086720375 0.3807196863200844 0.805462187404089 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}V[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}][{I|L}A][VG]V{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}V[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q[{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}[AG][{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}{[NV]|[RG]}V[Y{I|L}];[{I|L}T]{M(Oxidation (M))|F}V[VG][{I|L}A][Y{I|L}];[{I|L}T]{M(Oxidation (M))|F}V[Q{I|L}]V[Y{I|L}] 9.1735;7.5964;6.7319;5.6574;4.8324;3.6374;2.7962;2.7447;1.9316;1.8802 +;-;-;-;-;-;-;-;-;- + 312 NaN NaN 159521.9 NaN 20936 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25527 99.938 NaN 244380 35 0 47463 0.385 + 34745 YPWSIPFTL 9 44 562.2948256097958 1122.5750982863915 2 562.2952270507812 MULTI HCD FTMS 0 0 0 25522 104653.2890625 1 0 0 5 Unmodified _YPWSIPFTL_ ENSG00000147697|ENST00000276708|GSDMC 34.10243960390752 0.09241788333544565 1 T{I|L} 2 7 25.969 0 0 2.3134 0 0 890.4315291633625 0 890.4315291633625 0 15.791812460476251 0 0 0 0.5 0 0 0 + T{I|L} 2.3134 + + 54 NaN NaN 124393.7 NaN 20937 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25528 99.943 NaN 276540 35 0 85134 0.261 + 31306 VWNFPIDVTF 10 39 619.3163819151639 1236.6182108971277 2 619.316650390625 MULTI HCD FTMS 0 0 0 25522 70681.5625 0.39579920620018516 -4 0.057769775390625 6 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 59.368380827593164 0.04371880213842136 1 {[RE]|[WV]}N{M(Oxidation (M))|F}[{I|L}P]DVT{M(Oxidation (M))|F} 10 0 + 72.172 0 0 5.8362 5.8362 86.949 0 0 0 4.259687322722812 65.18237211568909 4.259687322722812 9.164539485499255 0 2.3494850021680094 0 0 1.2302046884880937 + + {[RE]|[WV]}N{M(Oxidation (M))|F}[{I|L}P]DVT{M(Oxidation (M))|F};{[RE]|[WV]}GG{M(Oxidation (M))|F}[{I|L}P]DVT{M(Oxidation (M))|F} 5.8362;5.0951 +;- + 109 NaN NaN 124178.8 NaN 20938 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25529 99.947 NaN 121750 35 0 12511 0.261 + 29358 TYPSPDIFLVI 11 38 632.8450246700085 1263.6754964068168 2 632.8450927734375 MULTI HCD FTMS 0 0 0 25522 53190.09765625 0.8830721914523227 2 -0.05434417724609375 7 Unmodified _TYPSPDIFLVI_ DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant;ENSG00000130158|ENST00000294618|DOCK6 17.11289562659939 0.30797719109864646 1 V{I|L} 2 9 20.969 0 0 1.6594 0 0 1033.5088241837113 0 1033.5088241837113 0 18.494850021680094 0 0 0 0 0 0 0 + V{I|L} 1.6594 + + 17 NaN NaN 92482.8 NaN 20939 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25530 99.95 NaN 111590 35 0 19982 0.261 + 35914 YYTFLTGSLL 10 46 589.3100531750488 1176.6055534168975 2 589.8115234375 MULTI HCD FTMS 0 0 0 25522 33157.69921875 0.8739008382101177 1 -0.0347747802734375 8 Unmodified _YYTFLTGSLL_ REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 26.88365393820708 0.25965138844209146 1 E{I|L}{I|L} 3 -1 37.307 0 0 3.1707 0 0 803.3617420880875 0 803.3617420880875 0 5.115618994235689 0 0 0 0.5 0 0.8494850021680094 0 E{I|L}{I|L} 3.1707 - 33 NaN NaN 106201.4 NaN 20940 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25531 99.953 NaN 140280 35 0 16486 0.261 + 11274 IYLSKSLIF 9 45 542.325188446276 NaN 0 542.3250732421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _IYLSKSLIF_ ENST00000370068.5_1_1:107683518-107690770:+|nuORF 18.13498045792455 0.19991664011725976 1 {I|L}{I|L}{[WN]|[YH]}{I|L}{I|L} 6 5 18.416 0 0 1.7011 0 0 165.11340519456581 162.0559023492797 327.16930754384555 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{[WN]|[YH]}{I|L}{I|L} 1.7011 - 42 + NaN NaN 104029.8 NaN 20941 4588 25522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25533 99.958 NaN 2105300 35 0 338530 0.327 + 28598 TQGQDLLI 8 54 444.24584984658475 886.4771467599695 2 444.2462158203125 MULTI HCD FTMS 0 0 0 25532 979740.5625 0.07562043605336172 10 -0.2122344970703125 1 Unmodified _TQGQDLLI_ REV__ENSG00000165795|ENST00000556147|NDRG2;REV__ENST00000553741.5_1_14:21488585-21492212:-|nuORF;REV__nc|ENSG00000165795|Q9UN36-3|NDRG2 2.302733041254933 0.5385759549224092 1 T 1 -1 13.896 0 0 1.5675 0 0 189.0422845546945 593.3631626106135 782.405447165308 0 0 0 0 0 0.7302046884880937 0 0.5 0 T 1.5675 + + 17 + NaN NaN 398105.3 NaN 20942 4589 25532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25534 99.963 NaN 163230 35 0 31422 0.261 + 5006 FCPAPPSR 8 45 437.7151026481462 873.4156523630925 2 437.71600341796875 MULTI HCD FTMS 0 0 0 25532 31057.3828125 0.058488059937422766 13 -0.2709503173828125 2 Unmodified _FCPAPPSR_ REV__ENST00000593829.5_1_19:18426856-18433916:-|nuORF 2.8892196856762586 0.5377058178582064 1 {[QN]|[E{I|L}]|[KN]}NV 4 -1 9.2968 0 0 1.0644 0 0 0 415.1391695611938 415.1391695611938 9.296831374325906 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}NV 1.0644 - 22 + NaN NaN 106981 NaN 20943 4589 25532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25535 99.966 NaN 76904 35 0 22672 0.261 -1 IQKLCLRVIV 10 39 621.3935421333313 NaN 0 621.3932495117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _IQKLC(Carbamidomethyl (C))LRVIV_ ENST00000242059.9_1_7:29960845-29960899:-|nuORF 1.4819007175156935 0.33891598740166873 1 K 1 -1 5.4846 0 0 0.44203 0 0 638.2932355344375 471.3584383600219 1109.6516738944595 0 0 0 0 0 0 0 0 0 K 0.44203 + + 2 + NaN NaN 91895 NaN 20944 4589 25532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25536 99.97 NaN 258310 35 0 28365 0.261 + 27008 SYLQSLLLF 9 48 542.3079048935359 1082.6012568538717 2 542.3079833984375 MULTI HCD FTMS 0 0 0 25532 40241.53125 0.025137110018535882 -8 0.13655853271484375 4 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 79.59630418116434 0.005983006570063981 1 [Y{I|L}]SQS{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 105.98 0 0 9.7898 9.7898 95.591 0 0 0 19.42008053022313 16.478174818886373 16.478174818886373 13.455612550363796 0 2.7302046884880937 1.6989700043360187 1.1861818737241734 0.4247425010840047 [Y{I|L}]SQS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]S[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{[TV]|[{I|L}S]}{[{M(Oxidation (M))|F}C]|[YS]}Q{I|L}{M(Oxidation (M))|F} 9.7898;8.5469;7.996;6.7531;4.288 -;-;+;-;- + 208 NaN NaN 118708.5 NaN 20945 4589 25532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25537 99.973 NaN 242910 35 0 89191 0.263 + 28445 TPKNSGLL 8 45 415.2439316579705 828.473310382741 2 415.2507019042969 MULTI HCD FTMS 0 0 0 25532 25737.87890625 0.05865814315239291 15 -0.30673980712890625 5 Unmodified _TPKNSGLL_ B2M|p.I27Nfs*30|1|0.25|ENSG00000166710|chr15:44715433-44715434|-/A|frameshift_variant 2.302733041254933 0.5385759549224092 1 T 1 7 16.237 0 0 1.9599 0 0 167.06091779599836 557.3417043307704 724.4026221267688 0 0 0 0 0 0.9247425010840047 0 0 0 + T 1.9599 + + 5 + NaN NaN 118329 NaN 20946 4589 25532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25539 99.978 NaN 1003700 35 0 213260 0.327 + 31217 VVPIGLYS 8 42 424.249651760148 846.4847505870961 2 424.2498474121094 MULTI HCD FTMS 0 0 0 25538 319824.53125 0.06010948394948033 13 -0.2709503173828125 1 Unmodified _VVPIGLYS_ REV__ENSG00000136002|ENST00000409359|ARHGEF4 5.760428011301431 0.5334459684533844 1 T 1 -1 18.227 0 0 2.1532 0 0 578.3752998437158 164.03957451011334 742.4148743538291 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 9 NaN NaN 233024.7 NaN 20947 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25540 99.982 NaN 628680 35 0 56798 0.261 + 35532 YYGPLNLLTF 10 63 600.8189691942443 1199.6233854552886 2 600.8189086914062 MULTI HCD FTMS 0 0 0 25538 355778.8125 0.059170297951335105 16 -0.32608795166015625 2 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 142.0795815696625 3.9736287154477415E-07 1 YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 80.168 0 0 6.6827 6.6827 86.179 0 0 0 3.978174818886373 3.978174818886373 3.978174818886373 3.978174818886373 0 2.6989700043360187 1.6989700043360187 2.004432191740108 0 + + YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}N{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P]GG{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}GG{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{I|L}[YK][WE]T{M(Oxidation (M))|F};YYG[TP][YK]{I|L}[VP] 6.6827;6.3511;5.9188;3.8796;2.3903;2.0586 +;-;-;-;-;- + 379 + NaN NaN 172035.3 NaN 20948 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25541 99.986 NaN 532660 35 0 90373 0.264 + 20810 PHLAFPPM 8 53 455.2365844958468 908.4586160584936 2 455.2369384765625 MULTI HCD FTMS 0 0 0 25538 274635.4375 0.08306561412380865 14 -0.28717041015625 3 Unmodified _PHLAFPPM_ nc|ENSG00000030304|O15146-2|MUSK;nc|ENSG00000030304|O15146-3|MUSK 2.8892196856762586 0.5377058178582064 1 T 1 8 15.242 0 0 1.6778 0 0 189.04324565805604 615.3448862832021 804.388131941258 0 0 0 0 0 0.8252574989159953 0 0 0 T 1.6778 - 14 + NaN NaN 160686.3 NaN 20949 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25542 99.989 NaN 317010 35 0 139960 0.261 + 22502 QRRQARLP 8 48 512.8093233020243 1023.6040936708486 2 512.8092651367188 MULTI HCD FTMS 0 0 0 25538 207013.21875 0.42549039871955097 3 -0.06866455078125 4 Unmodified _QRRQARLP_ REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF 5.230669730166228 0.5342319408533849 1 {I|L}P 2 -1 25.217 0 0 2.4635 0 0 795.4582195679446 0 795.4582195679446 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 {I|L}P 2.4635 + + 15 NaN NaN 133393.8 NaN 20950 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25543 99.992 NaN 230670 35 0 19297 0.261 + 11002 IYEPNFIFF 9 46 595.2999534135374 NaN 0 595.3004150390625 PEAK HCD FTMS 0 0 0 25538 37628.390625 0.14960120087630574 9 -0.19266510009765625 5 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 26.268140514670165 0.145325121643443 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 21.995 0 0 1.8505 0 0 165.0800675144729 613.2613009088499 778.3413684233228 0 0 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 1.8505 + + 28 + NaN NaN 120681.1 NaN 20951 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25544 99.996 NaN 171210 35 0 14915 0.261 -1 0 60 566.4278145449408 NaN 0 566.4277954101562 PEAK HCD FTMS 0 0 0 25538 26265.8359375 0.46910202426641656 2 -0.05243682861328125 6 NaN NaN 1 {I|L}{I|L} 2 -1 14.297 0 0 1.2643 0 0 677.5183050158597 224.13030420474846 901.6486092206081 0 0 0 0 0 1.110924374808178 0 0 0 {I|L}{I|L} 1.2643 - 55 + NaN NaN 103854.9 NaN 20952 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25545 99.999 NaN 490590 35 0 184830 0.261 + 19789 NYAWVYYHL 9 55 614.7933376087897 1227.5721222843792 2 614.7931518554688 MULTI HCD FTMS 0 0 0 25538 35806.95703125 0.3340856891879215 8 -0.1664886474609375 7 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 32.78568957990786 0.09846250359632436 1 [YN]AWV 5 4 54.125 0 0 4.4091 0 0 0 591.2589205377561 591.2589205377561 48.64007808576609 0 0 0 0 1.7302046884880937 1.6989700043360187 0 0 + [YN]AWV 4.4091 + + 49 + NaN NaN 160013.7 NaN 20953 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25546 100 NaN 104250 35 0 14774 0.261 + 13497 KYPENFFLL 9 34 585.8133700194857 1169.6121871057712 2 586.3161010742188 MULTI HCD FTMS 0 0 0 25538 25773.5703125 0.4709647582699108 -21 0.366119384765625 8 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 36.938 0 0 3.1582 0 0 631.29594618965 0 631.29594618965 0 16.760912590556813 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.1582 + + 29 NaN NaN 99327.9 NaN 20954 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25547 100.01 NaN 75525 35 0 8979.8 0.261 + 5123 FERRRELRRQK 11 48 525.3097703623807 1572.9074816873422 3 525.3092041015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99611.5 NaN 20955 4590 25538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25549 100.01 NaN 352640 35 0 73985 0.327 + 19901 NYFEVPLPYF 10 68 644.8165404714734 1287.6185280097468 2 644.8164672851562 MULTI HCD FTMS 0 0 0 25548 166371.484375 0.09092995055383044 12 -0.2381134033203125 1 Unmodified _NYFEVPLPYF_ ENSG00000163840|ENST00000296161|DTX3L 57.72198328787511 0.049706386133502735 1 [YN]{M(Oxidation (M))|F}EVP{I|L}PY{M(Oxidation (M))|F} 10 0 + 51.053 0 0 3.9649 3.9649 89.57 0 0 0 7.798611065162206 27.83116706396408 7.798611065162206 51.05295181285973 0 1.9564608101803795 0 0.3807196863200844 0.5796896906561032 + + [YN]{M(Oxidation (M))|F}EVP{I|L}PY{M(Oxidation (M))|F} 3.9649 + + 459 NaN NaN 147269.5 NaN 20956 4591 25548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25550 100.02 NaN 455040 35 0 52573 0.264 + 29620 VAPIIFLTI 9 56 493.81810883261306 NaN 0 493.8179931640625 PEAK HCD FTMS 0 0 0 25548 86114.5546875 0.14424817328044848 14 -0.2639923095703125 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 46.92087301778293 0.05607980621763639 1 T{I|L} 2 -1 23.469 0 0 2.3811 0 0 131.09483307256954 637.3705639478575 768.465397020427 0 0 0 0 0 0.8252574989159953 0 0.4247425010840047 0 T{I|L} 2.3811 + + 27 + NaN NaN 166116.3 NaN 20957 4591 25548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25551 100.02 NaN 98802 35 0 11608 0.261 + -1 KEKYLILL 8 47 531.3340406579886 1060.653528382777 2 531.3341064453125 MULTI HCD FTMS 0 0 0 25548 33425.9609375 0.07383975645730678 15 -0.29325103759765625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KEKYLILL_ REV__ENST00000481617.6_1_X:106064178-106064223:+|nuORF 36.04419817259434 0.28174663821216267 1 N{I|L}{I|L}{I|L} 4 -1 45.433 0 0 4.2835 0 0 589.3455677716812 0 589.3455677716812 0 38.979400086720375 0 0 0 0.9247425010840047 0 0 0.4247425010840047 N{I|L}{I|L}{I|L} 4.2835 - 64 NaN NaN 89157.7 NaN 20958 4591 25548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25552 100.02 NaN 114670 35 0 15404 0.261 + 20041 NYIKDDTRH 9 43 581.2846888482558 1160.5548247633114 2 581.2852172851562 MULTI HCD FTMS 0 0 0 25548 30280.423828125 0.31367387111148304 -6 0.12580108642578125 4 Unmodified _NYIKDDTRH_ ENSG00000135655|ENST00000280377|USP15;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15 13.90604991867851 0.24021115267848145 1 [YN]{I|L}{[YC]|[HE]}{I|L}M{[QN]|[E{I|L}]|[KN]} 9 6 + 41.615 0 0 3.5858 3.5858 88.796 0 0 0 1.9099998328935897 25.360527937172602 1.9099998328935897 41.614999749340384 0 1 2 0 0.3252574989159953 [YN]{I|L}{[YC]|[HE]}{I|L}M{[QN]|[E{I|L}]|[KN]} 3.5858 - 71 NaN NaN 110978.5 NaN 20959 4591 25548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25553 100.03 NaN 188410 35 0 20140 0.261 + 31299 VWGVPIPVF 9 38 507.29419848689474 1012.5738440405895 2 507.2940673828125 MULTI HCD FTMS 0 0 0 25548 54794.66796875 0.6225656471943296 -3 0.08718109130859375 5 Unmodified _VWGVPIPVF_ ENSG00000067704|ENST00000366922|IARS2 20.871210003555333 0.18003371494288972 1 {M(Oxidation (M))|F} 1 8 18.227 0 0 1.8 0 0 847.4949999017208 0 847.4949999017208 0 5.039237471316298 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.8 + + 7 + NaN NaN 116625.2 NaN 20960 4591 25548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25555 100.03 NaN 89826 35 0 7102.7 0.327 + 19654 NVIRATRPALP 11 47 604.3666039090739 1206.7186548849477 2 604.3667602539062 MULTI HCD FTMS 0 0 0 25554 111059.3984375 0.3195886372904889 8 -0.15979766845703125 1 Unmodified _NVIRATRPALP_ REV__ENSG00000181408|ENST00000313135|UTS2R 2.735195868890462 0.4069250265843076 1 P 1 -1 5.4846 0 0 0.4545 0 0 528.3169347695165 578.3245333307249 1106.6414681002414 0 0 0 0 0 0 0 0 0 P 0.4545 + + 4 + NaN NaN 100536.7 NaN 20961 4592 25554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25556 100.03 NaN 655480 35 0 66948 0.261 + 25350 SDYKLGWEI 9 59 555.775733578208 1109.536914223216 2 556.2784423828125 MULTI HCD FTMS 0 0 0 25554 155150.03125 0.6722713642422199 -5 0.11962890625 2 Unmodified _SDYKLGWEI_ ENSG00000139797|ENST00000267291|RNF113B 29.081581746732265 0.1154664336125038 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 8 48.817 0 0 4.3998 0 0 131.1006712533461 0 131.1006712533461 0 26.148028923534525 0 0 0 0.7614393726401688 0 0.3494850021680094 0.9247425010840047 EW[QA]W{I|L}{M(Oxidation (M))|F} 4.3998 - 425 + NaN NaN 182721.3 NaN 20962 4592 25554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25557 100.04 NaN 102980 35 0 7969.1 0.261 -1 0 46 539.9850494720356 1616.9333190163065 3 539.9842529296875 MULTI HCD FTMS 0 0 0 25554 36647.8046875 0.7139506711077164 -5 0.11962890625 3 NaN NaN 1 S{I|L} 2 -1 6.4537 0 0 0.39913 0 0 584.4079645060339 829.3870972020816 1413.7950617081156 0 0 0 0 0 0 0 0 0 S{I|L} 0.39913 - 13 + NaN NaN 96755 NaN 20963 4592 25554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25558 100.04 NaN 127340 35 0 6500.7 0.261 + 6432 FPIDLLDTL 9 55 523.7919282292033 1045.5693035252066 2 523.7914428710938 MULTI HCD FTMS 0 0 0 25554 50911.83203125 0.16140499731962343 -19 0.3309478759765625 4 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 30.636539890814138 0.10832830463492794 1 {I|L}DT{I|L} 4 5 38.532 0 0 3.6853 0 0 585.3161488263687 0 585.3161488263687 0 23.047444008242906 0 0 0 1.110924374808178 0 0 0 + {I|L}DT{I|L} 3.6853 + + 31 NaN NaN 101045.9 NaN 20964 4592 25554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25560 100.05 NaN 341620 35 0 54906 0.327 + 25275 SAVVEDLLYVL 11 49 610.8423638939677 1219.6701748547353 2 610.8424682617188 MULTI HCD FTMS 0 0 0 25559 70320.7265625 0.17524006248095947 -4 0.08823394775390625 1 Unmodified _SAVVEDLLYVL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 59.012897905743536 0.044407695078131824 1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VED{I|L}{I|L}YV{I|L} 10 2 + 66.266 0 0 5.4331 5.4331 91.516 0 0 0 3.379231027444405 55.56260915165723 3.379231027444405 43.62904104171733 0 2.9177353201839438 0 0.8494850021680094 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VED{I|L}{I|L}YV{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[RD][KA]YV{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[VP]HHYV{I|L} 5.4331;1.856;1.3624 -;-;- 126 NaN NaN 134945 NaN 20965 4593 25559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25561 100.05 NaN 166190 35 0 27901 0.261 -1 RENCRKPWN 9 37 630.30767101603 NaN 0 630.3216552734375 PEAK HCD FTMS 0 0 0 25559 7421.4716796875 0.3789944949055385 -4 0.08823394775390625 2 Carbamidomethyl (C) _RENC(Carbamidomethyl (C))RKPWN_ DACH2|p.T525Pfs*33|1|0.5|ENSG00000126733|chrX:86814717-86814717|A/-|frameshift_variant 5.731851221503515 0.26747109115447115 1 NC 2 -1 21.454 0 0 1.7046 0 0 285.1466089535201 753.3751925104124 1038.5218014639324 0 0 0 0 0 1.1989700043360187 0 0 0 NC 1.7046 + + 51 + NaN NaN 117843.2 NaN 20966 4593 25559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25562 100.05 NaN 240250 35 0 42772 0.264 + 13196 KYLTRMIKR 9 65 403.5810747800307 1207.7213949402922 3 403.5812072753906 MULTI HCD FTMS 0 0 0 25559 55246.26171875 0.2937772220337523 12 -0.2281646728515625 3 Unmodified _KYLTRMIKR_ REV__ENSG00000135355|ENST00000369352|GJA10;REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant 1.0714618166137932 0.3428945748894048 1 P 1 -1 3.4949 0 0 0.28938 0 0 987.5905793658766 120.05047022037343 1107.6410495862501 0 0 0 0 0 0 0 0 0 P 0.28938 - 8 + NaN NaN 116122.7 NaN 20967 4593 25559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25563 100.06 NaN 96097 35 0 12420 0.261 + 13498 KYPENFFLL 9 37 585.8133700194857 1169.6121871057712 2 585.813720703125 MULTI HCD FTMS 0 0 0 25559 56649.12890625 0.7171718375565777 11 -0.218505859375 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 17.44264345198275 0.2096557692338702 1 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 42.598 0 0 3.642 3.642 84.381 0 0 0 4.282118526775136 26.14393726401687 4.282118526775136 9.208187539523749 0 0.8494850021680094 0 0 0 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 3.642;2.8547;2.4468 +;-;- + 44 NaN NaN 96588.1 NaN 20968 4593 25559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25564 100.06 NaN 107030 35 0 14468 0.261 + 35915 YYTFLTGSLL 10 43 589.3100531750488 1176.6055534168975 2 589.3114624023438 MULTI HCD FTMS 0 0 0 25559 19998.861328125 0.4421544424585705 2 -0.0424957275390625 5 Unmodified _YYTFLTGSLL_ REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 14.838274106304384 0.3723198072575719 1 {I|L}{I|L} 2 -1 22.959 0 0 1.9513 0 0 932.425466480524 0 932.425466480524 0 12.501225267834 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.9513 + + 5 NaN NaN 96196.6 NaN 20969 4593 25559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25566 100.07 NaN 3103600 35 0 1341200 0.327 + 26528 SVLILASY 8 49 433.254706299722 864.494859666244 2 433.2550048828125 MULTI HCD FTMS 0 0 0 25565 1748319.875 0.01858589546747009 17 -0.2952880859375 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 16.594 0 0 1.9195 0 0 596.3857309958374 164.03864465885002 760.4243756546874 0 0 0 0 0 0.805462187404089 0 0.3054621874040891 0 T 1.9195 - 10 + NaN NaN 549415.1 NaN 20970 4594 25565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25567 100.07 NaN 257680 35 0 50296 0.261 + 32700 WPLPPDWPL 9 57 560.7949659028751 1119.5753788725501 2 560.7952880859375 MULTI HCD FTMS 0 0 0 25565 58003.74609375 0.4555277427254175 13 -0.250701904296875 2 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 21.74664581756881 0.17247014374749275 1 YWP{I|L} 4 6 33.092 0 0 2.9557 0 0 542.2919178693375 0 542.2919178693375 0 24.023722004121453 0 0 0 0.805462187404089 0 0 0 YWP{I|L} 2.9557 - 165 NaN NaN 136726.2 NaN 20971 4594 25565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25568 100.07 NaN 370220 35 0 81651 0.261 + 4638 EYNILVNFF 9 59 579.7950985922198 1157.5756442512395 2 579.79541015625 MULTI HCD FTMS 0 0 0 25565 102400.796875 0.04467712493376472 -11 0.2097320556640625 3 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 66.45667989310934 0.010234776021261575 1 QVN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 58.43 0 0 5.0476 0 0 504.2733631818375 0 504.2733631818375 0 54.45046257204389 0 0 0 1.3494850021680094 0 0 1.1747425010840047 QVN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0476 - 57 NaN NaN 147182.7 NaN 20972 4594 25565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25569 100.08 NaN 161510 35 0 15947 0.261 + 17554 LYVLQVLTF 9 43 548.3262381456367 1094.6379233580733 2 548.325927734375 MULTI HCD FTMS 0 0 0 25565 42037.0390625 0.03067659206234705 18 -0.3025360107421875 4 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 39.94969957227396 0.06557568441294001 1 QV{I|L}T{M(Oxidation (M))|F} 5 4 51.938 0 0 4.7448 0 0 488.2995777814469 0 488.2995777814469 0 44.94850021680094 0 0 0 1.8494850021680094 0 0 0 + QV{I|L}T{M(Oxidation (M))|F} 4.7448 + + 44 NaN NaN 106948.8 NaN 20973 4594 25565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25570 100.08 NaN 100790 35 0 15104 0.261 -1 MIDITRSII 9 29 539.3024325197852 1076.5903121063702 2 539.3026733398438 MULTI HCD FTMS 0 0 0 25565 15779.5478515625 0.523526670729188 1 -0.02288818359375 5 Oxidation (M) _M(Oxidation (M))IDITRSII_ ENSG00000169826|ENST00000374466|CSGALNACT2;nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2 10.073929032068715 0.27331982688540024 1 {I|L}{I|L} 2 -1 24.464 0 0 2.2724 0 0 832.4143462253611 0 832.4143462253611 0 24.463950151760656 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L} 2.2724 + + 3 NaN NaN 119708.6 NaN 20974 4594 25565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25571 100.08 NaN 58639 35 0 4339.2 0.261 + 17140 LYLPSFFTY 9 37 575.7952270507812 NaN 0 575.7952270507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 16.942295170755138 0.2079222001251384 1 K 1 9 8.2268 0 0 0.71564 0 0 592.3023007794937 426.16742883853755 1018.4697296180314 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.71564 - 6 + NaN NaN 91742.1 NaN 20975 4594 25565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25573 100.09 NaN 374390 35 0 59869 0.327 + 31307 VWNFPIDVTF 10 53 619.3163819151639 1236.6182108971277 2 619.3162231445312 MULTI HCD FTMS 0 0 0 25572 113938.640625 0.6380281069041615 3 -0.055328369140625 1 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 74.19965305603844 0.012609120674105788 1 {[RE]|[WV]}N{M(Oxidation (M))|F}P{I|L}DVT{M(Oxidation (M))|F} 10 0 + 82.412 0 0 6.6643 6.6643 88.49 0 0 0 5.764837301042718 75.42182338535682 5.764837301042718 9.164539485499262 0 2.4826446478103827 0 0.3807196863200844 1.1382104921644451 + + {[RE]|[WV]}N{M(Oxidation (M))|F}P{I|L}DVT{M(Oxidation (M))|F};{[RE]|[WV]}GG{M(Oxidation (M))|F}P{I|L}DVT{M(Oxidation (M))|F};{[RE]|[WV]}N{M(Oxidation (M))|F}P{I|L}D[{M(Oxidation (M))|F}T]V 6.6643;5.9232;3.6064 +;-;- + 171 NaN NaN 142254.6 NaN 20976 4595 25572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25574 100.09 NaN 219450 35 0 35320 0.261 + -1 FIMDLCRPL 9 53 562.2835676063266 NaN 0 562.2951049804688 PEAK HCD FTMS 0 0 0 25572 7303.06103515625 1 0 0 2 Oxidation (M) _FIM(Oxidation (M))DLCRPL_ REV__chr15:69446091-69446286|506|11.59|0.5|4.54|+|ENST00000395392|KIF23,KIF23;REV__ENSG00000137807|ENST00000679126|KIF23;REV__nc|ENSG00000137807|Q02241-2|KIF23;REV__nc|ENSG00000137807|Q02241|KIF23 4.75600775471527 0.27219989241163056 1 {M(Oxidation (M))|F}{I|L} 2 -1 7.9588 0 0 0.70899 0 0 634.2531876034751 225.12392603092033 859.3771136343954 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.70899 + + 34 + NaN NaN 112153.6 NaN 20977 4595 25572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25575 100.1 NaN 247140 35 0 29974 0.261 + 34942 YSLVTQQPLG 10 51 553.2984256333361 1104.5822983334722 2 553.2989501953125 MULTI HCD FTMS 0 0 0 25572 68942.3828125 0.26863634639530715 -2 0.0424957275390625 3 Unmodified _YSLVTQQPLG_ tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 14.405379775768559 0.37636895476610294 1 G{I|L}[KP][HT]{I|L}{M(Oxidation (M))|F} 8 8 33.734 0 0 3.054 0 0 193.08045804203067 0 193.08045804203067 0 19.06804392152253 0 0 0 1.8494850021680094 0 0 0 G{I|L}[KP][HT]{I|L}{M(Oxidation (M))|F} 3.054 - 75 + NaN NaN 121248.3 NaN 20978 4595 25572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25576 100.1 NaN 118590 35 0 20272 0.261 + 35920 YYTKDYVLL 9 34 589.3100531750488 1176.6055534168975 2 589.812255859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYTKDYVLL_ tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1 6.723162845929126 0.3000504726104499 1 {I|L}{I|L} 2 7 22.959 0 0 1.9513 0 0 932.4283025805746 0 932.4283025805746 0 22.95880017344075 0 0 0 0.5 0 0 0 + {I|L}{I|L} 1.9513 + + 2 NaN NaN 97399.6 NaN 20979 4595 25572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25577 100.1 NaN 94845 35 0 7113.9 0.261 + -1 YNIKHFFMK 9 41 622.3170001457685 1242.6194473583369 2 622.3160400390625 MULTI HCD FTMS 0 0 0 25572 14441.08984375 0.843992154376556 -1 0.02288818359375 5 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 1 [YN]{I|L} 3 -1 34.749 0 0 2.7965 0 0 0 849.4072640910118 849.4072640910118 10.056584229283843 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [YN]{I|L} 2.7965 + + 37 NaN NaN 109278.1 NaN 20980 4595 25572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25579 100.11 NaN 2075800 35 0 254230 0.327 + 27009 SYLQSLLLF 9 74 542.3079048935359 1082.6012568538717 2 542.3080444335938 MULTI HCD FTMS 0 0 0 25578 735793.25 0.45961759658800455 -1 0.0195159912109375 1 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 163.03601447609117 7.615514112917802E-09 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 104.29 0 0 9.6336 9.6336 95.14 0 0 0 7.816658315635081 44.085390679490075 7.816658315635081 12.25772496747986 0 3.1549471895720984 0 1.860924374808178 0.7302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[TV]|[{I|L}S]}Q{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[TV]|[{I|L}S]}Q{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[TV]|[{I|L}S]}[AG]{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[TV]|[{I|L}S]}{I|L}Q{I|L}{M(Oxidation (M))|F};{I|L}{I|L}S{I|L}{M(Oxidation (M))|F}E[KS]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[TV]|[{I|L}S]}[AG]{I|L}{M(Oxidation (M))|F}{I|L} 9.6336;8.5014;8.1086;6.9763;6.625;5.4927;5.0999;5.0114;4.5222;3.9677 +;-;-;-;-;-;-;-;-;- + 919 NaN NaN 410339.6 NaN 20981 4596 25578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25580 100.11 NaN 109320 35 0 7582.5 0.261 + -1 KRRQLCVRKLM 11 55 510.63429643857785 1528.8810599159335 3 510.6341247558594 MULTI HCD FTMS 0 0 0 25578 62024.44140625 0.25322343526939967 17 -0.27919769287109375 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 1 M 1 -1 6.9897 0 0 0.45718 0 0 641.4115297419086 753.4096773736936 1394.8212071156022 0 0 0 0 0 0 0 0 0 M 0.45718 + + 3 + NaN NaN 97709.3 NaN 20982 4596 25578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25581 100.12 NaN 381250 35 0 73513 0.262 + 16851 LYELIITRYS 10 44 424.240929439295 NaN 0 424.24945068359375 PEAK HCD FTMS 0 0 0 25578 6989.0078125 1 0 0 3 Unmodified _LYELIITRYS_ ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENST00000530567.1_1_11:64977449-64978754:+|nuORF 1.7422754331352037 0.33869314273211465 1 T 1 9 8.9794 0 0 1.0608 0 0 578.3579747459744 164.03876672916252 742.3967414751369 0 0 0 0 0 0 0 0.3494850021680094 0 + T 1.0608 + + 5 + NaN NaN 137962.4 NaN 20983 4596 25578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25582 100.12 NaN 287990 35 0 28681 0.261 + 6433 FPIDLLDTL 9 58 523.7919282292033 1045.5693035252066 2 523.791259765625 MULTI HCD FTMS 0 0 0 25578 94612.3515625 0.29994808163601744 -15 0.28680419921875 4 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 88.90359156742426 0.00455469703666567 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L} 9 0 + 69.052 0 0 6.6043 6.6043 93.443 0 0 0 17.632192780232785 27.69200051715508 17.632192780232785 38.94138788323808 0 1.6237125054200234 1.3979400086720375 0.3252574989159953 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}P{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L} 6.6043;2.8799;2.5931 +;-;- + 222 NaN NaN 128808.9 NaN 20984 4596 25578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25583 100.12 NaN 85405 35 0 11861 0.261 -1 0 47 530.9852024468665 1589.9337779407995 3 530.9848022460938 MULTI HCD FTMS 0 0 0 25578 20535.298828125 0.35469589272159907 -15 0.28680419921875 5 NaN NaN 1 {I|L}{I|L}[WC(Carbamidomethyl (C))]{I|L}{I|L}{I|L} 7 -1 18.996 0 0 1.1948 0 0 660.371352258962 0 660.371352258962 0 13.511744483784085 0 0 0 0 0 0 0 {I|L}{I|L}[WC(Carbamidomethyl (C))]{I|L}{I|L}{I|L} 1.1948 - 20 + NaN NaN 98570.2 NaN 20985 4596 25578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25585 100.13 NaN 290220 35 0 28257 0.327 + 35533 YYGPLNLLTF 10 48 600.8189691942443 1199.6233854552886 2 600.8187866210938 MULTI HCD FTMS 0 0 0 25584 208641.765625 0.03469963641278913 23 -0.4032745361328125 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 142.0795815696625 3.9736287154477415E-07 1 YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 80.48 0 0 6.7088 6.7088 88.431 0 0 0 45.7306842758112 25.565658918089653 25.565658918089653 9.164539485499247 0 2.6989700043360187 1.6989700043360187 2.0356668758921828 0 + + YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P]GG{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}V]A{I|L}[HT]{[DA]|[EG]}{I|L}T{M(Oxidation (M))|F} 6.7088;5.9448;2.4388 +;-;- + 242 + NaN NaN 125040.8 NaN 20986 4597 25584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25586 100.13 NaN 342140 35 0 39192 0.261 + 33521 YIEYYLVLD 9 45 595.8018389348279 1189.5891249364556 2 595.8021850585938 MULTI HCD FTMS 0 0 0 25584 45381.953125 0.22256742303730245 14 -0.23333740234375 2 Unmodified _YIEYYLVLD_ ENSG00000042980|ENST00000265769|ADAM28;nc|ENSG00000042980|Q9UKQ2-2|ADAM28 4.75600775471527 0.31496297302216103 1 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 5 18.382 0 0 1.5452 0 0 0 163.05929100713766 163.05929100713766 5.678732196748587 0 0 0 0 0 1.2218487496163564 0 0 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 1.5452 - 95 NaN NaN 142003.9 NaN 20987 4597 25584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25587 100.14 NaN 119430 35 0 13671 0.263 + 21132 PPHLAFPM 8 45 455.2365844958468 908.4586160584936 2 455.2367858886719 MULTI HCD FTMS 0 0 0 25584 71040.90625 0.021486872048579554 21 -0.36742401123046875 3 Unmodified _PPHLAFPM_ ENST00000355068.4_1_17:7210662-7213200:+|nuORF;ENST00000575001.1_1_17:7211023-7213200:+|nuORF 0.7936320650641473 0.540814922690045 1 T 1 8 11.99 0 0 1.3198 0 0 189.04179233667827 615.3441174636828 804.3859098003611 0 0 0 0 0 0.5 0 0 0 T 1.3198 - 7 + NaN NaN 101849.2 NaN 20988 4597 25584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25588 100.14 NaN 163300 35 0 40267 0.261 + 22503 QRRQARLP 8 50 512.8093233020243 1023.6040936708486 2 512.8090209960938 MULTI HCD FTMS 0 0 0 25584 67302.9609375 0.13833301978114979 10 -0.188751220703125 4 Unmodified _QRRQARLP_ REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF 2.302733041254933 0.5385759549224092 1 {I|L}P 2 -1 19.464 0 0 1.9015 0 0 795.45805556465 0 795.45805556465 0 10 0 0 0 0 0 0 0 {I|L}P 1.9015 + + 9 NaN NaN 107199.1 NaN 20989 4597 25584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25590 100.14 NaN 367080 35 0 34218 0.327 + 6434 FPIDLLDTL 9 59 523.7919282292033 1045.5693035252066 2 523.7919921875 MULTI HCD FTMS 0 0 0 25589 132721.953125 0.42076636478622226 -13 0.25945281982421875 1 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 100.37149154755038 0.004254194004462789 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L} 9 0 + 77.467 0 0 7.4091 7.4091 94.759 0 0 0 18.741436528314566 20.863401831372656 18.741436528314566 35.63461437856928 0 1.774227503252014 1.3979400086720375 0.6694451763165201 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}D{I|L}P{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}D{I|L}{M(Oxidation (M))|F}P;{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L} 7.4091;4.001;3.3543;2.9871 +;-;-;- + 312 NaN NaN 142279.3 NaN 20990 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25591 100.15 NaN 238320 35 0 45720 0.261 + 19902 NYFEVPLPYF 10 58 644.8165404714734 1287.6185280097468 2 644.8161010742188 MULTI HCD FTMS 0 0 0 25589 82996.9765625 0.045361805860521576 19 -0.33159637451171875 2 Unmodified _NYFEVPLPYF_ ENSG00000163840|ENST00000296161|DTX3L 38.175570920033316 0.1612389583597779 1 T{I|L}{I|L}AAVE{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10 10 42.655 0 0 3.3127 0 0 166.0502528129519 0 166.0502528129519 0 24.952359395051715 0 0 0 0.8494850021680094 0 0 1.1307196863200843 T{I|L}{I|L}AAVE{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.3127 - 319 + NaN NaN 123983.6 NaN 20991 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25592 100.15 NaN 390670 35 0 92572 0.261 + 15709 LPESLTSLLVL 11 60 592.8605360845269 1183.7065192358536 2 592.8606567382812 MULTI HCD FTMS 0 0 0 25589 52134.59375 0.13542633505550727 -12 0.252532958984375 3 Unmodified _LPESLTSLLVL_ ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF 24.990960013464015 0.23933535780272686 1 [{I|L}V]T[EP]T{[TV]|[{I|L}S]}{I|L}V{I|L} 11 4 + 42.765 0 0 3.6128 3.6128 88.861 0 0 0 0.29941066626140156 18.83735733750857 0.29941066626140156 42.76525764102988 0 1.555462187404089 0 0 0 [{I|L}V]T[EP]T{[TV]|[{I|L}S]}{I|L}V{I|L} 3.6128 - 444 NaN NaN 163084.5 NaN 20992 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25593 100.16 NaN 164490 35 0 27897 0.261 + 31976 VYPLAAAFAVL 11 44 567.8316365056594 1133.6487200781187 2 567.8318481445312 MULTI HCD FTMS 0 0 0 25589 54788.22265625 0.5716888696429943 -13 0.25945281982421875 4 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 28.486842064014134 0.21109842150324093 1 AA{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L} 6 5 32.638 0 0 2.879 0 0 543.3065052716812 0 543.3065052716812 0 16.440162615404077 0 0 0 1.3252574989159953 0 0 0 + AA{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L} 2.879 + + 91 NaN NaN 125008.4 NaN 20993 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25594 100.16 NaN 131670 35 0 39762 0.261 + -1 YLHGNDWFC 9 35 606.2507722354466 1210.486991537693 2 606.2510375976562 MULTI HCD FTMS 0 0 0 25589 26152.017578125 0.24114884454224192 -7 0.1336517333984375 5 Carbamidomethyl (C) _YLHGNDWFC(Carbamidomethyl (C))_ REV__ENSG00000100100|ENST00000215912|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-2|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-4|PIK3IP1 2.302733041254933 0.33356062215410776 1 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.57743 0 0 116.01177990013055 931.4131315772808 1047.4249114774113 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.57743 + + 6 + NaN NaN 116629.7 NaN 20994 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25595 100.16 NaN 100590 35 0 8044.6 0.261 + 25624 SGLIGYILLL 10 48 531.3340406579886 1060.653528382777 2 531.3339233398438 MULTI HCD FTMS 0 0 0 25589 26273.1015625 0.05803870304224029 22 -0.3870086669921875 6 Unmodified _SGLIGYILLL_ tr|U7SSH2|U7SSH2_FUSNULIVCSfamilybranched-chainaminoacid:cationtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01450PE=3SV=1 24.020572477871973 0.2864316864133941 1 {I|L}{I|L}{I|L}{I|L} 4 6 41.938 0 0 3.954 0 0 590.3069935529312 0 590.3069935529312 0 34.94850021680094 0 0 0 1 0 0 0 + {I|L}{I|L}{I|L}{I|L} 3.954 + + 56 NaN NaN 104237.1 NaN 20995 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25596 100.17 NaN 129710 35 0 15979 0.261 + 13752 KYPSPFFVF 9 45 566.2976324581632 1130.5807119831263 2 566.2976684570312 MULTI HCD FTMS 0 0 0 25589 33491.77734375 0.5408051775633874 -2 0.0358123779296875 7 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 20.41453444215458 0.18397929046831515 1 [YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 3 + 32.381 0 0 2.8641 2.8641 79.412 0 0 0 0.9640156839957861 16.47817481888638 0.9640156839957861 0.9640156839957861 0 0.9247425010840047 0 0 0 [YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.8641;2.7788;2.3316 -;+;- + 29 NaN NaN 106863.1 NaN 20996 4598 25589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25598 100.17 NaN 205750 35 0 25610 0.327 + -1 RGCFCILIE 9 49 555.775733578208 1109.536914223216 2 556.277587890625 MULTI HCD FTMS 0 0 0 25597 138558.15625 0.6003780984032137 2 -0.03247833251953125 1 Carbamidomethyl (C) _RGC(Carbamidomethyl (C))FCILIE_ REV__ENST00000565940.6_3_16:47483948-47484179:-|nuORF 25.399314129420986 0.14091189997036632 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 -1 41.26 0 0 3.7187 0 0 131.09999670121698 0 131.09999670121698 0 27.280929143502632 0 0 0 0.7059771852360797 0 0 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 3.7187 - 103 + NaN NaN 111859.9 NaN 20997 4599 25597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25599 100.17 NaN 230750 35 0 27271 0.261 -1 0 55 590.7862520025868 1179.5579510719735 2 590.7864379882812 MULTI HCD FTMS 0 0 0 25597 78355.796875 0.28587061982316825 -6 0.12400054931640625 2 NaN NaN 1 NV{I|L}{I|L}NHH 7 -1 32.255 0 0 2.7345 0 0 334.1294422834 0 334.1294422834 0 -2.9659780392387347 -2.9659780392387347 0 0 0.805462187404089 0 0 0 NV{I|L}{I|L}NHH 2.7345 - 70 NaN NaN 123842.3 NaN 20998 4599 25597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25600 100.18 NaN 296260 35 0 49901 0.261 + 11003 IYEPNFIFF 9 48 595.2999534135374 NaN 0 595.2996215820312 PEAK HCD FTMS 0 0 0 25597 57231.421875 0.22753801845221686 18 -0.305419921875 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 32.78568957990786 0.10157793141031472 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 23.812 0 0 2.0034 0 0 165.07799636900137 613.2625216119749 778.3405179809763 0 0 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.0034 + + 23 + NaN NaN 138174.4 NaN 20999 4599 25597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25601 100.18 NaN 48571 35 0 5478.3 0.261 + 19260 NLKIEGRHLK 10 37 604.3666039090739 1206.7186548849477 2 604.366455078125 MULTI HCD FTMS 0 0 0 25597 50115.78125 0.14421502782989748 15 -0.2301177978515625 4 Unmodified _NLKIEGRHLK_ REV__ENSG00000155906|ENST00000444024|RMND1;REV__nc|ENSG00000155906|Q9NWS8-2|RMND1 1.3295316138638542 0.46826628246186464 1 P 1 -1 6.9897 0 0 0.57923 0 0 114.11241319578478 992.5230115027223 1106.635424698507 0 0 0 0 0 0 0 0 0 P 0.57923 - 1 + NaN NaN 106337.6 NaN 21000 4599 25597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25602 100.19 NaN 76096 35 0 6294.1 0.264 + 8804 HINLMKTSDSY 11 52 436.8797600483085 1307.6174507451256 3 437.21484375 MULTI HCD FTMS 0 0 0 25597 44227.83203125 0.7046654584426109 14 -0.2172088623046875 5 Unmodified _HINLMKTSDSY_ ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;nc|ENSG00000152894|Q15262|PTPRK 1.3296431237094175 0.4130893034510334 1 [MT]W 3 9 1.4609 0 0 0.11172 0 0 0 886.429071188738 886.429071188738 1.460872158338839 0 0 0 0 0 0 0 0 [MT]W 0.11172 - 10 NaN NaN 98926.6 NaN 21001 4599 25597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25604 100.19 NaN 269510 35 0 70483 0.327 + 25276 SAVVEDLLYVL 11 53 610.8423638939677 1219.6701748547353 2 610.8424072265625 MULTI HCD FTMS 0 0 0 25603 148770.140625 0.37073690806159504 3 -0.0587158203125 1 Unmodified _SAVVEDLLYVL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 41.34703777101937 0.12827471393888273 1 E{NN|[MP]|[D{I|L}]|[EV]}{I|L}YV{I|L} 7 4 55.706 0 0 4.5673 0 0 356.20652968574376 0 356.20652968574376 0 48.71600731282193 0 0 0 2.1989700043360187 0 0.8494850021680094 0 + E{NN|[MP]|[D{I|L}]|[EV]}{I|L}YV{I|L} 4.5673 + + 68 NaN NaN 134803.7 NaN 21002 4600 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25605 100.19 NaN 84218 35 0 13240 0.261 + 13499 KYPENFFLL 9 30 585.8133700194857 1169.6121871057712 2 585.8132934570312 MULTI HCD FTMS 0 0 0 25603 56083.1328125 0.7100063883000446 18 -0.30541229248046875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 15.248480904072842 0.22861284681709862 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3655873029312 0 778.3655873029312 0 17.998037644757048 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 9 NaN NaN 96732.1 NaN 21003 4600 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25606 100.2 NaN 161930 35 0 17249 0.261 + 31300 VWGVPIPVF 9 45 507.29419848689474 1012.5738440405895 2 507.2927551269531 MULTI HCD FTMS 0 0 0 25603 52837.703125 0.6003310187231689 6 -0.11385345458984375 3 Unmodified _VWGVPIPVF_ ENSG00000067704|ENST00000366922|IARS2 20.871210003555333 0.18003371494288972 1 {M(Oxidation (M))|F} 1 8 19.732 0 0 1.9487 0 0 847.4946184319942 0 847.4946184319942 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.9487 + + 5 + NaN NaN 102814.2 NaN 21004 4600 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25608 100.2 NaN 3939400 35 0 1076700 0.327 + 4639 EYNILVNFF 9 85 579.7950985922198 1157.5756442512395 2 579.79541015625 MULTI HCD FTMS 0 0 0 25607 1502791.375 0.6556628469621864 -4 0.074920654296875 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 176.83740622441886 1.0594397382223596E-10 1 [YE]N{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 108.53 0 0 9.3755 9.3755 93.329 0 0 0 25.801208380675362 88.97608139917317 25.801208380675362 9.208187539523749 0 2.774227503252014 0 2.166386562212267 1.6549471895720984 + + [YE]N{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]N{I|L}{I|L}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]N{I|L}V{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]N{I|L}V{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}{I|L}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}V{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}V{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}[YK]{I|L}[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}V{I|L}{[CA]|SS}[TP]{M(Oxidation (M))|F} 9.3755;8.58;7.8842;7.4489;6.6534;6.3587;6.2865;4.761;2.6467;1.9051 +;-;-;-;-;-;-;-;-;- + 739 NaN NaN 690068.6 NaN 21005 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25609 100.21 NaN 1418100 35 0 579170 0.263 + 26529 SVLILASY 8 46 433.254706299722 864.494859666244 2 433.25482177734375 MULTI HCD FTMS 0 0 0 25607 705242.5625 0.007497234764225134 24 -0.41947174072265625 2 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 17.346 0 0 2.0065 0 0 596.3856584285996 164.03855310611564 760.4242115347153 0 0 0 0 0 0.8807196863200843 0 0.3054621874040891 0 T 2.0065 - 15 + NaN NaN 290930.7 NaN 21006 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25610 100.21 NaN 291370 35 0 74855 0.261 + 31108 VTLGVLYS 8 50 426.2469013552494 850.4792497772988 2 426.2471008300781 MULTI HCD FTMS 0 0 0 25607 97793.6015625 0.7106777599241313 -2 0.03247833251953125 3 Unmodified _VTLGVLYS_ ENSG00000214511|ENST00000695931|HIGD1C 5.230669730166228 0.5342319408533849 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 3 7 14.471 0 0 1.7015 0 0 0 440.27521470333323 440.27521470333323 10.734047060778417 0 0 0 0 0 1.3010299956639813 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 1.7015 - 10 NaN NaN 127011.7 NaN 21007 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25611 100.21 NaN 188960 35 0 29922 0.261 + 32701 WPLPPDWPL 9 47 560.7949659028751 1119.5753788725501 2 560.7952880859375 MULTI HCD FTMS 0 0 0 25607 43601.74609375 0.34242279705297984 20 -0.3380584716796875 4 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 21.74664581756881 0.17247014374749275 1 WP{I|L} 3 6 32.945 0 0 2.9427 0 0 705.34770400215 0 705.34770400215 0 32.94531259372398 0 0 0 0.8252574989159953 0 0 0 + WP{I|L} 2.9427 + + 28 NaN NaN 115935.9 NaN 21008 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25612 100.22 NaN 420300 35 0 135520 0.261 + 19790 NYAWVYYHL 9 53 614.7933376087897 1227.5721222843792 2 614.7931518554688 MULTI HCD FTMS 0 0 0 25607 49451.9375 0.46139594065328965 19 -0.3283538818359375 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.02929079705179888 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 74.134 0 0 6.039 6.039 90.644 0 0 0 15.399765408488904 68.64902171010165 15.399765408488904 16.95046257204389 0 2.1549471895720984 1.6989700043360187 0 0.3252574989159953 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWV[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.039;4.6582;4.2509 +;-;- + 144 NaN NaN 151399.8 NaN 21009 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25613 100.22 NaN 110580 35 0 11154 0.261 + 17555 LYVLQVLTF 9 42 548.3262381456367 1094.6379233580733 2 548.8275756835938 MULTI HCD FTMS 0 0 0 25607 20652.158203125 0.029909513376727166 21 -0.364013671875 6 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 36.12702656103203 0.08312389501731911 1 QV{I|L}T{M(Oxidation (M))|F} 5 4 49.949 0 0 4.563 0 0 488.2990895001969 0 488.2990895001969 0 47.95880017344075 0 0 0 1.5 0 0 0 + QV{I|L}T{M(Oxidation (M))|F} 4.563 + + 51 NaN NaN 109051.3 NaN 21010 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25614 100.22 NaN 130330 35 0 28844 0.261 + 5660 FNRVNNKFH 9 39 588.3075561523438 NaN 0 588.3075561523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _FNRVNNKFH_ REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF 4.3292370932331545 0.2742679634796037 1 {I|L}VN 3 -1 14.693 0 0 1.2509 0 0 536.2590465802749 309.1245211236938 845.3835677039688 0 0 0 0 0 0 0 0 0 {I|L}VN 1.2509 - 12 + NaN NaN 103934 NaN 21011 4601 25607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25616 100.23 NaN 325830 35 0 84290 0.327 + 17008 LYITLPLAL 9 49 508.8231248830236 1015.6316968328472 2 508.82305908203125 MULTI HCD FTMS 0 0 0 25615 61779.05078125 0.056313783968646836 -8 0.16310882568359375 1 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 70.71552829651908 0.008856681705782516 1 [Y{I|L}]{I|L}T{I|L}[{I|L}P]A{I|L} 9 0 + 70.613 0 0 6.9526 6.9526 95.015 0 0 0 21.12704280191288 63.62327181850212 21.12704280191288 70.6129718618623 0 1.8807196863200843 1.3979400086720375 0.8494850021680094 0 + + [Y{I|L}]{I|L}T{I|L}[{I|L}P]A{I|L} 6.9526 + + 47 NaN NaN 131700.2 NaN 21012 4602 25615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25617 100.23 NaN 149950 35 0 20595 0.261 + 31308 VWNFPIDVTF 10 48 619.3163819151639 1236.6182108971277 2 619.3169555664062 MULTI HCD FTMS 0 0 0 25615 32675.861328125 0.1829767129946965 10 -0.13942718505859375 2 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 32.037481411007896 0.2145045983280644 1 DVT{M(Oxidation (M))|F} 4 6 46.186 0 0 3.7348 0 0 756.3984242169937 0 756.3984242169937 0 34.195925227640984 0 0 0 1.4247425010840047 0 0 0 + DVT{M(Oxidation (M))|F} 3.7348 + + 22 NaN NaN 108515.2 NaN 21013 4602 25615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25618 100.24 NaN 93208 35 0 8601.4 0.262 + 22042 QGFVIELLL 9 33 516.310365261786 1030.606177590372 2 516.3102416992188 MULTI HCD FTMS 0 0 0 25615 42971.1953125 0.719507565649367 -8 0.16310882568359375 3 Unmodified _QGFVIELLL_ ENSG00000075539|ENST00000358350|FRYL 12.240655878213236 0.2545997876781172 1 E{I|L}{I|L}{I|L} 4 5 41.938 0 0 4.0693 0 0 544.3005026131426 0 544.3005026131426 0 41.938200260161125 0 0 0 1 0 0 0 + E{I|L}{I|L}{I|L} 4.0693 + + 14 NaN NaN 90209.3 NaN 21014 4602 25615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25619 100.24 NaN 177190 35 0 22917 0.261 + 5875 FPDFVWTL 8 54 512.760254948915 1023.50595696463 2 512.7606811523438 MULTI HCD FTMS 0 0 0 25615 29192.140625 0.3733738436843502 -9 0.18271636962890625 4 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 21.74664581756881 0.4337896562907935 1 DWT{I|L} 4 4 35.054 0 0 3.4249 0 0 490.26426894355626 0 490.26426894355626 0 31.074842526208485 0 0 0 1 0 0.28872548999643577 0 DWT{I|L} 3.4249 - 59 NaN NaN 109934.4 NaN 21015 4602 25615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25620 100.24 NaN 40674 35 0 5152.8 0.261 -1 0 34 639.1651676892941 NaN 0 639.3493041992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.27382 0 0 655.9854734627694 470.2390535943969 1126.2245270571664 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.27382 - 2 + NaN NaN 95598.9 NaN 21016 4602 25615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25622 100.25 NaN 800840 35 0 99238 0.327 + 27010 SYLQSLLLF 9 56 542.3079048935359 1082.6012568538717 2 542.3079833984375 MULTI HCD FTMS 0 0 0 25621 303784.40625 0.18976072243329084 6 -0.09052276611328125 1 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 125.52916310638031 0.0008761121089336018 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 98.427 0 0 9.0917 9.0917 94.673 0 0 0 4.762036441594191 71.77108148272637 4.762036441594191 12.25772496747986 0 3.1989700043360187 0 1.2302046884880937 0.7302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 9.0917;7.9594;7.5666;6.4344 +;-;-;- + 322 NaN NaN 206139.8 NaN 21017 4603 25621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25623 100.25 NaN 384170 35 0 42598 0.261 + 6435 FPIDLLDTL 9 75 523.7919282292033 1045.5693035252066 2 523.7918701171875 MULTI HCD FTMS 0 0 0 25621 147233.046875 0.4667706619088621 -8 0.1597900390625 2 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 100.37149154755038 0.004254194004462789 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L} 9 0 + 80.116 0 0 7.6624 7.6624 95.632 0 0 0 18.741436528314566 30.273109370204452 18.741436528314566 47.75498964026645 0 1.8494850021680094 1.3979400086720375 0.6549471895720985 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}D{I|L}P{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L} 7.6624;3.0951;2.7291 +;-;- + 265 NaN NaN 137996 NaN 21018 4603 25621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25624 100.26 NaN 155170 35 0 19468 0.261 + 34943 YSLVTQQPLG 10 44 553.2984256333361 1104.5822983334722 2 553.299072265625 MULTI HCD FTMS 0 0 0 25621 47558.4140625 0.1853129827097996 6 -0.09052276611328125 3 Unmodified _YSLVTQQPLG_ tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 14.405379775768559 0.37636895476610294 1 {I|L}{[TV]|[{I|L}S]}Q[TP]{M(Oxidation (M))|F} 7 5 34.991 0 0 3.1678 0 0 300.14399916816564 0 300.14399916816564 0 24.50659450546418 0 0 0 1.75 0 0 0 {I|L}{[TV]|[{I|L}S]}Q[TP]{M(Oxidation (M))|F} 3.1678 - 82 NaN NaN 126634.4 NaN 21019 4603 25621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25625 100.26 NaN 164080 35 0 21407 0.261 + -1 RGCFCILIE 9 54 555.775733578208 1109.536914223216 2 556.2783203125 MULTI HCD FTMS 0 0 0 25621 55038.21484375 0.2384828122840885 6 -0.09052276611328125 4 Carbamidomethyl (C) _RGC(Carbamidomethyl (C))FCILIE_ REV__ENST00000565940.6_3_16:47483948-47484179:-|nuORF 25.399314129420986 0.14091189997036632 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 -1 44.953 0 0 4.0515 0 0 131.10124711645466 0 131.10124711645466 0 26.59070760684173 0 0 0 0.7742275032520141 0 0 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 4.0515 - 139 + NaN NaN 123332.5 NaN 21020 4603 25621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25627 100.27 NaN 256600 35 0 23784 0.327 + 35534 YYGPLNLLTF 10 48 600.8189691942443 1199.6233854552886 2 600.8189086914062 MULTI HCD FTMS 0 0 0 25626 157572.625 0.02620622376219774 30 -0.48676300048828125 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 99.79894945604345 0.00025031564603709316 1 N{I|L}{I|L}T{M(Oxidation (M))|F} 5 5 48.328 0 0 4.0286 0 0 593.2841043047011 0 593.2841043047011 0 20.880456295278407 0 0 0 1.8494850021680094 0 1.110924374808178 0 + N{I|L}{I|L}T{M(Oxidation (M))|F} 4.0286 + + 106 + NaN NaN 117764.8 NaN 21021 4604 25626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25628 100.27 NaN 100400 35 0 14959 0.261 + -1 LPLFCVVFVL 10 42 603.8511961241176 1205.687839315035 2 603.8513793945312 MULTI HCD FTMS 0 0 0 25626 44372.1875 0.6255692986372959 -6 0.1206817626953125 2 Carbamidomethyl (C) _LPLFC(Carbamidomethyl (C))VVFVL_ REV__ENSG00000178623|ENST00000407714|GPR35;REV__nc|ENSG00000178623|Q9HC97-2|GPR35 18.13498045792455 0.3414835283589826 1 {I|L}PE 3 -1 27.435 0 0 2.2755 0 0 0 863.4883516900999 863.4883516900999 15.445312593723983 0 0 0 0 0 0 0.4247425010840047 0 {I|L}PE 2.2755 - 25 + NaN NaN 105309.6 NaN 21022 4604 25626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25630 100.27 NaN 674510 35 0 203730 0.327 + 15710 LPESLTSLLVL 11 66 592.8605360845269 1183.7065192358536 2 592.8606567382812 MULTI HCD FTMS 0 0 0 25629 337152.5 0.8757971271196856 -5 0.0845947265625 1 Unmodified _LPESLTSLLVL_ ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF 69.10491478415734 0.016192963456165197 1 TS{I|L}{I|L}V{I|L} 6 5 72.256 0 0 6.1042 0 0 539.2961343329472 0 539.2961343329472 0 65.26593150440647 0 0 0 1.9604093769761874 0 0.8494850021680094 0 + TS{I|L}{I|L}V{I|L} 6.1042 + + 140 NaN NaN 190935.6 NaN 21023 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25631 100.28 NaN 177110 35 0 33761 0.261 + 31977 VYPLAAAFAVL 11 48 567.8316365056594 1133.6487200781187 2 567.8319091796875 MULTI HCD FTMS 0 0 0 25629 61316.82421875 0.639811700913363 -6 0.10416412353515625 2 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 53.57557251787612 0.0667355439374129 1 AA{M(Oxidation (M))|F}AV{I|L} 6 5 50.667 0 0 4.4694 0 0 543.3051624982437 0 543.3051624982437 0 43.677222137369185 0 0 0 1.7302046884880937 0 0 0 + AA{M(Oxidation (M))|F}AV{I|L} 4.4694 + + 94 NaN NaN 108015.3 NaN 21024 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25632 100.28 NaN 363750 35 0 107120 0.261 + 11004 IYEPNFIFF 9 45 595.2999534135374 NaN 0 595.2996215820312 PEAK HCD FTMS 0 0 0 25629 55463.09375 0.22050758194804213 24 -0.409393310546875 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 47.748688679222035 0.05342496295576811 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 24.085 0 0 2.0264 0 0 165.07755166996645 613.2622164361936 778.3397681061601 0 0 0 0 0 1.1382104921644451 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.0264 + + 25 + NaN NaN 144787.2 NaN 21025 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25633 100.29 NaN 101600 35 0 14027 0.261 + 27480 SYYGPLNLLTF 11 50 644.3346554594897 1286.6547579857793 2 644.3350830078125 MULTI HCD FTMS 0 0 0 25629 40623.05859375 0.010403736405188107 44 -0.7364654541015625 4 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 42.835182525472874 0.11869059338859039 1 N{I|L}{I|L}T{M(Oxidation (M))|F} 5 6 53.672 0 0 4.1714 0 0 680.31743056465 0 680.31743056465 0 45.44531259372398 0 0 0 1.3807196863200843 0 0 0.7302046884880937 + N{I|L}{I|L}T{M(Oxidation (M))|F} 4.1714 + + 70 NaN NaN 102205 NaN 21026 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25634 100.29 NaN 48524 35 0 5058 0.262 -1 0 31 539.9850494720356 1616.9333190163065 3 539.9849243164062 MULTI HCD FTMS 0 0 0 25629 22155.4921875 0.4316200834093248 8 -0.11304473876953125 5 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.43228 0 0 671.4346477549775 829.3898409479124 1500.82448870289 0 0 0 0 0 0 0 0 0 {I|L} 0.43228 - 1 + NaN NaN 89869 NaN 21027 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25635 100.29 NaN 112350 35 0 18497 0.261 + 13500 KYPENFFLL 9 34 585.8133700194857 1169.6121871057712 2 586.3162841796875 MULTI HCD FTMS 0 0 0 25629 24322.853515625 0.44445556775908085 -6 0.10416412353515625 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.5 0 0 2.4367 0 0 778.36332900215 0 778.36332900215 0 7.530834337684311 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4367 + + 46 NaN NaN 98308.4 NaN 21028 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25636 100.3 NaN 78600 35 0 5972.9 0.261 + 17556 LYVLQVLTF 9 41 548.3262381456367 1094.6379233580733 2 548.3247680664062 MULTI HCD FTMS 0 0 0 25629 51412.18359375 0.037518117791195474 29 -0.47710418701171875 7 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 9.38312468134398 0.279288223203164 1 {I|L}T{M(Oxidation (M))|F} 3 6 31.198 0 0 2.8501 0 0 715.4266759100764 0 715.4266759100764 0 24.20818753952375 0 0 0 0.5 0 0 0 + {I|L}T{M(Oxidation (M))|F} 2.8501 + + 4 NaN NaN 93294.6 NaN 21029 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25637 100.3 NaN 61470 35 0 10819 0.261 + 20391 NYVKANYLPY 10 37 622.8182983398438 NaN 0 622.8182983398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 6.2057823575117 0.3348729994311477 1 {I|L} 1 9 16.99 0 0 1.3673 0 0 852.4276170392594 274.08283411197505 1126.5104511512345 0 0 0 0 0 1 0 0 0 + {I|L} 1.3673 + + 13 + NaN NaN 91055.2 NaN 21030 4605 25629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25639 100.3 NaN 177370 35 0 65519 0.327 + -1 EMERWRCE 8 33 606.2507722354466 1210.486991537693 2 606.2509155273438 MULTI HCD FTMS 0 0 0 25638 62942.3203125 0.5803937600922681 1 -0.01288604736328125 1 Carbamidomethyl (C),Oxidation (M) _EM(Oxidation (M))ERWRC(Carbamidomethyl (C))E_ REV__CHST10-MAP4K4|3|fusion;REV__ENSG00000071054|ENST00000324219|MAP4K4;REV__nc|ENSG00000071054|O95819-3|MAP4K4;REV__nc|ENSG00000071054|O95819|MAP4K4 1.844237919475145 0.5392561982033289 1 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.57743 0 0 116.01029107045572 931.4137064580698 1047.4239975285254 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.57743 + + 5 + NaN NaN 109694.8 NaN 21031 4606 25638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25640 100.31 NaN 309780 35 0 57492 0.261 + 32902 YADGIFDLF 9 62 530.7529698131947 1059.4913866931893 2 530.7532958984375 MULTI HCD FTMS 0 0 0 25638 105276.671875 0.1898846810452465 -10 0.19541168212890625 2 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 37.97399986684836 0.07464525285885698 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F} 8 5 + 62.669 0 0 5.915 5.915 93.009 0 0 0 16.694699959806982 35.859790849763655 16.694699959806982 62.668884535972325 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F} 5.915 - 102 NaN NaN 134269.1 NaN 21032 4606 25638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25641 100.31 NaN 150880 35 0 45308 0.261 + 34432 YPETLVNLIVL 11 29 637.3737954248594 1272.7330379165187 2 637.3731079101562 MULTI HCD FTMS 0 0 0 25638 53152.0234375 0.030094850197120136 -13 0.25742340087890625 3 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 12.872603262515298 0.344922997490724 1 C{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{I|L} 6 6 34.526 0 0 2.7127 0 0 599.3336048810562 0 599.3336048810562 0 34.52561882712928 0 0 0 1 0 0 0 C{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{I|L} 2.7127 - 14 NaN NaN 107911.7 NaN 21033 4606 25638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25643 100.32 NaN 371640 35 0 44651 0.327 -1 0 64 590.7862520025868 1179.5579510719735 2 590.7865600585938 MULTI HCD FTMS 0 0 0 25642 100855.5703125 0.367958026690077 2 -0.02249908447265625 1 NaN NaN 1 [YE]N{I|L}{I|L}VN 7 -1 65.786 0 0 5.5771 0 0 0 331.1058748834594 331.1058748834594 24.084690186984744 0 0 0 0 1.8411290632962718 1.3979400086720375 0 0.9194451763165201 [YE]N{I|L}{I|L}VN 5.5771 - 189 + NaN NaN 137058.2 NaN 21034 4607 25642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25644 100.32 NaN 80111 35 0 11417 0.261 + 13501 KYPENFFLL 9 31 585.8131013046903 1169.6116496761806 2 585.8134155273438 MULTI HCD FTMS 0 0 0 25642 41936.14453125 0.6282867758330717 -25 0.4797210693359375 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2545997876781172 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3686390607437 0 778.3686390607437 0 15 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 7 NaN NaN 98576.3 NaN 21035 4607 25642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25645 100.32 NaN 55900 35 0 5265.4 0.263 + 19224 NKGMSEEI 8 35 454.2134085066904 NaN 0 453.8802185058594 PEAK HCD FTMS 0 0 0 25642 4766.89697265625 0.261008602857966 -2 0.042144775390625 3 Unmodified _NKGMSEEI_ REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98015.3 NaN 21036 4607 25642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25647 100.33 NaN 2142700 35 0 573130 0.327 + 4640 EYNILVNFF 9 74 579.7950985922198 1157.5756442512395 2 579.7954711914062 MULTI HCD FTMS 0 0 0 25646 1488353.25 0.6493635413501243 3 -0.0316619873046875 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 168.65858592105317 4.556178112754322E-09 1 {[ES]|[DT]|[{I|L}C]}[R{M(Oxidation (M))|F}]{I|L}VN{M(Oxidation (M))|F} 8 4 76.833 0 0 6.6374 0 0 0 162.05560923783426 162.05560923783426 58.389399919613965 0 0 0 0 2.4247425010840047 0 1.8411290632962718 1.6549471895720984 {[ES]|[DT]|[{I|L}C]}[R{M(Oxidation (M))|F}]{I|L}VN{M(Oxidation (M))|F} 6.6374 - 482 NaN NaN 409223.4 NaN 21037 4608 25646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25648 100.33 NaN 105980 35 0 17050 0.263 -1 QQQQAGVM 8 38 453.20969806610617 NaN 0 453.20953369140625 PEAK HCD FTMS 0 0 0 25646 41379.8125 0.9332962830547309 11 -0.18201446533203125 2 Oxidation (M) _QQQQAGVM(Oxidation (M))_ ENSG00000072840|ENST00000264956|EVC 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96260.5 NaN 21038 4608 25646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25650 100.34 NaN 160390 35 0 28006 0.327 + 32702 WPLPPDWPL 9 41 560.7949659028751 1119.5753788725501 2 560.7953491210938 MULTI HCD FTMS 0 0 0 25649 26487.298828125 0.20801586550233997 28 -0.47226715087890625 1 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 21.74664581756881 0.17247014374749275 1 WP{I|L} 3 6 33.5 0 0 2.9922 0 0 705.3481922834 0 705.3481922834 0 14.035984316004217 0 0 0 0.8807196863200843 0 0 0 + WP{I|L} 2.9922 + + 56 NaN NaN 112070.1 NaN 21039 4609 25649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25651 100.34 NaN 50182 35 0 7029.4 0.262 -1 0 30 469.32884187290955 468.32156540630956 1 469.3288269042969 MULTI HCD FTMS 0 0 0 25649 17044.427734375 0.656973634395129 -17 0.3090362548828125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86232.3 NaN 21040 4609 25649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25653 100.35 NaN 1401900 35 0 400250 0.327 + 17009 LYITLPLAL 9 52 508.8231248830236 1015.6316968328472 2 508.8232421875 MULTI HCD FTMS 0 0 0 25652 1097050.25 1 0 0 1 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 137.58523961978855 0.00014495867019203413 1 [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 9 0 + 105.82 0 0 10.419 10.419 99.677 0 0 0 21.12704280191288 91.12424888969434 21.12704280191288 105.81698649425837 0 2.66944517631652 1.3979400086720375 1.6549471895720984 0 + + [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 10.419 + + 131 NaN NaN 298074.5 NaN 21041 4610 25652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25654 100.35 NaN 198840 35 0 47150 0.262 + 31109 VTLGVLYS 8 48 426.2469013552494 850.4792497772988 2 426.24713134765625 MULTI HCD FTMS 0 0 0 25652 89369.1015625 0.6494559141916733 7 -0.12722015380859375 2 Unmodified _VTLGVLYS_ ENSG00000214511|ENST00000695931|HIGD1C 2.302733041254933 0.5385759549224092 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 3 7 15.686 0 0 1.8444 0 0 0 440.27789865850343 440.27789865850343 8.212112250009655 0 0 0 0 0 1.3010299956639813 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 1.8444 - 9 NaN NaN 111746.4 NaN 21042 4610 25652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25655 100.36 NaN 214430 35 0 33563 0.261 + 14200 LAPVPSEVRS 10 52 527.7965138280524 1053.5784747229047 2 527.7963256835938 MULTI HCD FTMS 0 0 0 25652 44266.9921875 0.9313655269133065 1 -0.0126953125 3 Unmodified _LAPVPSEVRS_ REV__ENST00000448363.2_1_6:71122572-71122758:-|nuORF 4.5288652416199255 0.4513317009562028 1 {I|L}A 2 -1 16.454 0 0 1.5617 0 0 0 866.4331482377993 866.4331482377993 9.463950151760656 0 0 0 0 0 0 0 0 {I|L}A 1.5617 + + 4 + NaN NaN 123061.1 NaN 21043 4610 25652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25657 100.36 NaN 92716 35 0 9291.1 0.327 + 22043 QGFVIELLL 9 31 516.310365261786 1030.606177590372 2 516.3101196289062 MULTI HCD FTMS 0 0 0 25656 40013.17578125 0.6699786331494638 1 -0.0072479248046875 1 Unmodified _QGFVIELLL_ ENSG00000075539|ENST00000358350|FRYL 12.240655878213236 0.2545997876781172 1 E{I|L}{I|L}{I|L} 4 5 41.938 0 0 4.0693 0 0 544.3006479631578 0 544.3006479631578 0 34.94850021680094 0 0 0 1 0 0 0 + E{I|L}{I|L}{I|L} 4.0693 + + 24 NaN NaN 109390.7 NaN 21044 4611 25656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25659 100.37 NaN 369080 35 0 30010 0.327 + 27011 SYLQSLLLF 9 61 542.3079048935359 1082.6012568538717 2 542.3080444335938 MULTI HCD FTMS 0 0 0 25658 137145.703125 0.08566887295131409 15 -0.2963409423828125 1 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 85.64151623876279 0.004640175941193596 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KT]{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 73.47 0 0 6.7864 6.7864 88.375 0 0 0 8.767959391884546 16.478174818886373 8.767959391884546 8.767959391884546 0 1.8252574989159953 1.6989700043360187 1.1421590589602533 0.3494850021680094 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KT]{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{[TV]|[{I|L}S]}[YT]N{I|L}{M(Oxidation (M))|F} 6.7864;5.9765;3.0255 -;+;- + 315 NaN NaN 134305.2 NaN 21045 4612 25658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25660 100.37 NaN 136290 35 0 10563 0.261 + 12572 KTGNWVRY 8 43 512.2701662240895 1022.525779514979 2 512.7606201171875 MULTI HCD FTMS 0 0 0 25658 5913.36962890625 0.8316243962857907 -1 0.0072479248046875 2 Unmodified _KTGNWVRY_ ENSG00000104517|ENST00000520539|UBR5;nc|ENSG00000104517|O95071-2|UBR5 8.593279151180031 0.5292430274356741 1 TWD 3 6 17.435 0 0 1.7051 0 0 130.10890377629943 487.24180017642817 617.3507039527276 0 0 0 0 0 0 0 0.2742275032520141 0 TWD 1.7051 - 36 + NaN NaN 98915.1 NaN 21046 4612 25658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25661 100.38 NaN 122090 35 0 20321 0.261 + 25116 SAFIPDPPLF 10 39 552.293059102419 NaN 0 552.2935791015625 PEAK HCD FTMS 0 0 0 25658 85085.8046875 1 0 0 3 Unmodified _SAFIPDPPLF_ REV__ENSG00000070413|ENST00000263196|DGCR2;REV__nc|ENSG00000070413|P98153-2|DGCR2;REV__nc|ENSG00000070413|P98153-3|DGCR2 3.944395688203298 0.33680843299986807 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103757 NaN 21047 4612 25658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25662 100.38 NaN 129300 35 0 10955 0.261 + 10203 IGCCLIVAGTF 11 35 548.7804212728818 1095.5462896125634 2 548.7799682617188 MULTI HCD FTMS 0 0 0 25658 21618.576171875 0.24337308288946471 -9 0.1198577880859375 4 Unmodified _IGCCLIVAGTF_ tr|U7SSA8|U7SSA8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01561PE=4SV=1 8.155526934196011 0.3831532958467648 1 QV{I|L}T{M(Oxidation (M))|F} 5 8 40.701 0 0 3.7151 0 0 489.2053605127572 0 489.2053605127572 0 17.513487579716767 0 0 0 0.4247425010840047 0 0 0 QV{I|L}T{M(Oxidation (M))|F} 3.7151 - 36 + NaN NaN 97654.3 NaN 21048 4612 25658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25663 100.38 NaN 43718 35 0 4349.4 0.261 + 17141 LYLPSFFTY 9 31 575.7944541007673 NaN 0 575.795166015625 PEAK HCD FTMS 0 0 0 25658 12665.8466796875 0.4615994988322124 1 -0.01906585693359375 5 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 11.640296217721598 0.23883959125015683 1 {I|L} 1 8 9.6041 0 0 0.83545 0 0 760.3446017056377 273.12482629947505 1033.4694280051128 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.83545 + + 7 + NaN NaN 90989.7 NaN 21049 4612 25658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25665 100.39 NaN 461690 35 0 49690 0.327 + 6436 FPIDLLDTL 9 63 523.7919282292033 1045.5693035252066 2 523.7919311523438 MULTI HCD FTMS 0 0 0 25664 161556.375 0.5121796885611475 2 -0.03910064697265625 1 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 112.59319219568356 0.00251905749371435 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L} 9 0 + 78.355 0 0 7.494 7.494 95.202 0 0 0 18.881580146315784 35.67410004652736 18.881580146315784 43.87009080640346 0 1.774227503252014 1.5228787452803376 0.7302046884880937 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L};[{I|L}T]D{I|L}[{M(Oxidation (M))|F}V][EP]{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}P{M(Oxidation (M))|F};[{I|L}T]D{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}P{M(Oxidation (M))|F} 7.494;3.2982;2.9176;2.8285;2.4479 +;-;-;-;- + 353 NaN NaN 169972.6 NaN 21050 4613 25664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25666 100.39 NaN 97110 35 0 17980 0.262 -1 0 33 422.1885454511173 842.3625379690346 2 422.1887512207031 MULTI HCD FTMS 0 0 0 25664 65337.28125 0.4428660997023967 -1 0.01906585693359375 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94104.7 NaN 21051 4613 25664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25667 100.4 NaN 62296 35 0 7542.9 0.261 + 31309 VWNFPIDVTF 10 37 619.3163819151639 1236.6182108971277 2 619.3170776367188 MULTI HCD FTMS 0 0 0 25664 17372.841796875 0.09728360196684283 21 -0.3640594482421875 3 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 7.608950283845883 0.4350283211712914 1 T{M(Oxidation (M))|F} 2 8 26.198 0 0 2.1185 0 0 970.4913931254465 0 970.4913931254465 0 26.197887582883936 0 0 0 1 0 0 0 + T{M(Oxidation (M))|F} 2.1185 + + 6 + NaN NaN 96636.1 NaN 21052 4613 25664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25669 100.4 NaN 1144300 35 0 444560 0.327 + 26530 SVLILASY 8 48 433.254706299722 864.494859666244 2 433.2547607421875 MULTI HCD FTMS 0 0 0 25668 528106.8125 0.00561415456813006 37 -0.64642333984375 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 1 T 1 8 16.906 0 0 1.9556 0 0 167.06050482842073 593.3630914614754 760.4235962898961 0 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 T 1.9556 - 11 + NaN NaN 256829.1 NaN 21053 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25670 100.41 NaN 127140 35 0 11396 0.261 + 35535 YYGPLNLLTF 10 37 600.8189691942443 1199.6233854552886 2 600.8192749023438 MULTI HCD FTMS 0 0 0 25668 90429.8359375 0.015039569946600531 40 -0.6985549926757812 2 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 56.17704186161178 0.05532499666593632 1 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 43.928 0 0 3.6618 0 0 707.3273229803792 0 707.3273229803792 0 33.470325397914564 0 0 0 1.5 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.6618 + + 15 NaN NaN 95910.9 NaN 21054 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25671 100.41 NaN 182650 35 0 28818 0.261 + 31978 VYPLAAAFAVL 11 53 567.8316365056594 1133.6487200781187 2 567.8316650390625 MULTI HCD FTMS 0 0 0 25668 51606.7109375 0.5384913182338203 3 -0.0753021240234375 3 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 63.562846038646086 0.025723774771338973 1 AA{M(Oxidation (M))|F}AV{I|L} 6 5 46.235 0 0 4.0784 0 0 543.306444236525 0 543.306444236525 0 31.286531417686092 0 0 0 1.3494850021680094 0 0 0 + AA{M(Oxidation (M))|F}AV{I|L} 4.0784 + + 66 NaN NaN 113391.9 NaN 21055 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25672 100.41 NaN 423540 35 0 131160 0.261 + 19791 NYAWVYYHL 9 60 614.7933376087897 1227.5721222843792 2 614.7932739257812 MULTI HCD FTMS 0 0 0 25668 41752.40625 0.38955785617615163 32 -0.5504379272460938 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 56.17704186161178 0.022929533404884107 1 [YN]AWVYY[H{I|L}] 9 0 + 54.93 0 0 4.4747 4.4747 82.366 0 0 0 50.325922616077534 0.16720697227476933 0.16720697227476933 3.970544657224835 0 1.7059771852360797 1.6989700043360187 0 0 + + [YN]AWVYY[H{I|L}];[YN]AWV[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVY{[VA]|[{I|L}G]}{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]A[{M(Oxidation (M))|F}V]VWS{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]A[{M(Oxidation (M))|F}V]VCY[H{I|L}];[YN]A[{M(Oxidation (M))|F}V]VC{[VA]|[{I|L}G]}{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[VA]|[{I|L}G]}YV{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.4747;4.1512;3.6773;3.5127;3.1899;2.3961;1.5468 +;-;-;-;-;-;- + 140 + NaN NaN 150233.3 NaN 21056 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25673 100.42 NaN 211530 35 0 46992 0.261 + 3746 ENHDWYCF 8 45 557.2086331567306 1112.402713380261 2 557.2090454101562 MULTI HCD FTMS 0 0 0 25668 40565.27734375 0.5570992459289584 3 -0.0753021240234375 5 Unmodified _ENHDWYCF_ ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11 2.302733041254933 0.5385759549224092 1 {I|L}{M(Oxidation (M))|F} 2 7 24.464 0 0 2.1992 0 0 834.2397017609236 0 834.2397017609236 0 16.505149978319906 0 0 0 0.3494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.1992 - 10 + NaN NaN 118300.6 NaN 21057 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25674 100.42 NaN 58155 35 0 7700.7 0.263 + 5638 FMMRRDQEVP 10 38 436.87920282369356 NaN 0 436.8793029785156 PEAK HCD FTMS 0 0 0 25668 5967.09326171875 0.22168771289217276 30 -0.5146484375 6 Unmodified _FMMRRDQEVP_ REV__ENSG00000236761|ENST00000314099|CTAGE9;REV__nc|ENSG00000288784|Q8IX94|CTAGE4;REV__nc|ENSG00000289604|P0CG41|CTAGE8 2.0860074813731053 0.33839895573887124 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103685.6 NaN 21058 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25675 100.42 NaN 131690 35 0 13991 0.261 + 10615 IPQHLLKTF 9 51 548.827820787869 NaN 0 548.828125 PEAK HCD FTMS 0 0 0 25668 22432.189453125 1 0 0 7 Unmodified _IPQHLLKTF_ ENSG00000108854|ENST00000262435|SMURF2;ENST00000582081.5_1_17:62541968-62590137:-|nuORF 4.75600775471527 0.27219989241163056 1 V{I|L}T 3 7 13.812 0 0 1.2607 0 0 617.3635750700754 162.0559481256469 779.4195231957223 0 0 0 0 0 0 0 0 0 V{I|L}T 1.2607 - 51 + NaN NaN 101397.8 NaN 21059 4614 25668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25677 100.43 NaN 201190 35 0 21213 0.327 + 29601 VAPIIFLTI 9 51 493.817796588511 985.621040243822 2 493.8178405761719 MULTI HCD FTMS 0 0 0 25676 75028.1640625 0.3064177960890113 18 -0.308929443359375 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 32.116972079565 0.101532291542178 1 {I|L}T{I|L} 3 -1 34.693 0 0 3.5199 0 0 640.3956165998062 0 640.3956165998062 0 21.072099696478684 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {I|L}T{I|L} 3.5199 + + 40 NaN NaN 117204.6 NaN 21060 4615 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25678 100.43 NaN 501490 35 0 133950 0.261 + 15863 LPLDLEDIF 9 53 537.7893583982765 1073.5641638633529 2 537.78955078125 MULTI HCD FTMS 0 0 0 25676 185591.4375 0.3684100368575913 -7 0.097076416015625 2 Unmodified _LPLDLEDIF_ ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP 25.399314129420986 0.14091189997036632 1 ED{I|L}{M(Oxidation (M))|F} 4 5 42.735 0 0 3.9807 0 0 551.3320626021595 0 551.3320626021595 0 40.26084705832169 0 0 0 1.3807196863200843 0 0 0 + ED{I|L}{M(Oxidation (M))|F} 3.9807 + + 18 NaN NaN 169860 NaN 21061 4615 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25679 100.43 NaN 405340 35 0 62417 0.261 + 34608 YPNTYIFDLF 10 52 646.8134140538385 1291.612275174477 2 646.8135375976562 MULTI HCD FTMS 0 0 0 25676 92505.484375 0.6254226634664954 -1 0.02619171142578125 3 Unmodified _YPNTYIFDLF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 38.61474834105838 0.1574278268413918 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 5 + 55.239 0 0 4.2767 4.2767 90.104 0 0 0 5.764837301042718 48.249256301612746 5.764837301042718 55.238956344972934 0 1.3807196863200843 0 0 0.3807196863200844 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4.2767 - 110 NaN NaN 149698.3 NaN 21062 4615 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25680 100.44 NaN 89415 35 0 13238 0.262 + -1 MLWWAQIF 8 33 555.775733578208 1109.536914223216 2 556.27783203125 MULTI HCD FTMS 0 0 0 25676 32794.41796875 0.14209954023055432 18 -0.308929443359375 4 Oxidation (M) _M(Oxidation (M))LWWAQIF_ REV__ENST00000484792.5_1_X:153073350-153073458:-|nuORF 10.183394434864962 0.5188676124868831 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 -1 31.19 0 0 2.8111 0 0 131.09613160778468 0 131.09613160778468 0 17.90237082533343 0 0 0 0 0 0 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 2.8111 - 30 + NaN NaN 96658 NaN 21063 4615 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25681 100.44 NaN 39755 35 0 3860.7 0.261 + 9671 HVIDANSPL 9 31 483.25710887872583 NaN 0 483.2571105957031 PEAK HCD FTMS 0 0 0 25676 11757.583984375 0.45060980968177194 1 -0.0229034423828125 5 Unmodified _HVIDANSPL_ ENSG00000187486|ENST00000339994|KCNJ11;nc|ENSG00000187486|Q14654-2|KCNJ11 4.75600775471527 0.27219989241163056 1 C 1 9 2.7642 0 0 0.2866 0 0 364.3497757635079 494.1048678033813 858.4546435668892 0 0 0 0 0 0 0 0 0 C 0.2866 - 1 + NaN NaN 86365.7 NaN 21064 4615 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25682 100.44 NaN 50861 35 0 8391.6 0.261 + 1814 CRLSLTKKFV 10 32 597.8567378367993 NaN 0 597.856689453125 PEAK HCD FTMS 0 0 0 25676 23781.25 1 0 0 6 Unmodified _CRLSLTKKFV_ ENST00000554746.1_1_14:85996623-86087517:+|nuORF 1.1933415558491238 0.33916295405077446 1 M 1 10 5.4846 0 0 0.45946 0 0 633.3352948187533 426.29865442447505 1059.6339492432282 0 0 0 0 0 0 0 0 0 M 0.45946 - 1 + NaN NaN 85096.2 NaN 21065 4615 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25684 100.45 NaN 1081500 35 0 350900 0.327 + 34433 YPETLVNLIVL 11 46 637.3737954248594 1272.7330379165187 2 637.3739013671875 MULTI HCD FTMS 0 0 0 25683 975224.6875 0.5521754202520015 -3 0.06200408935546875 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 51.41523569358685 0.07560675738465314 1 VN{I|L}{I|L}V{I|L} 6 5 73.889 0 0 5.8055 0 0 603.2905750959 0 603.2905750959 0 60.70107520596089 0 0 0 2.274227503252014 0 0 0.8494850021680094 + VN{I|L}{I|L}V{I|L} 5.8055 + + 50 NaN NaN 237838.7 NaN 21066 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25685 100.45 NaN 935500 35 0 182780 0.263 + 32903 YADGIFDLF 9 70 530.7529698131947 1059.4913866931893 2 530.7531127929688 MULTI HCD FTMS 0 0 0 25683 554424.25 1 0 0 2 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 64.23631603340823 0.01165516075559909 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F} 8 5 + 67.611 0 0 6.3815 6.3815 92.721 0 0 0 19.875977872132324 37.517346757967545 19.875977872132324 33.52305044894762 0 1.4247425010840047 1.5228787452803376 0.75 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}G{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[ES]|[DT]|[{I|L}C]}G{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}A{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F} 6.3815;3.2174;2.7671;2.6491 -;-;-;- 308 NaN NaN 231776.6 NaN 21067 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25686 100.46 NaN 271340 35 0 33404 0.261 + -1 YADAVDMGPK 10 60 541.7440533255701 1081.4735537179401 2 541.7440795898438 MULTI HCD FTMS 0 0 0 25683 116573.8515625 0.9474932227812085 -3 0.06200408935546875 3 Oxidation (M) _YADAVDM(Oxidation (M))GPK_ REV__ENSG00000163618|ENST00000383710|CADPS;REV__ENST00000474560.1_1_3:62385083-62423949:-|nuORF;REV__nc|ENSG00000163618|Q9ULU8-2|CADPS;REV__nc|ENSG00000163618|Q9ULU8-3|CADPS;REV__nc|ENSG00000163618|Q9ULU8-4|CADPS 24.990960013464015 0.27735500881591096 1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YS 8 -1 47.858 0 0 4.4253 0 0 0 162.05775716936515 162.05775716936515 18.65787713959719 0 0 0 0 2.2302046884880937 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YS 4.4253 - 238 NaN NaN 119707.5 NaN 21068 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25687 100.46 NaN 252770 35 0 40944 0.261 -1 0 41 595.3000734521801 594.29279698558 1 595.3009033203125 MULTI HCD FTMS 0 0 0 25683 46199.80859375 0.4943274486534211 -16 0.2596435546875 4 NaN NaN 1 [Y{I|L}]E 3 -1 3.5565 0 0 0.59845 0 0 0 186.07988129638002 186.07988129638002 0.255762612236905 0 0 0 0 0 0 0 0 [Y{I|L}]E 0.59845 - 8 NaN NaN 138258.2 NaN 21069 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25688 100.46 NaN 127670 35 0 14138 0.261 + 13753 KYPSPFFVF 9 46 566.2975143420886 1130.580475750977 2 566.297119140625 MULTI HCD FTMS 0 0 0 25683 40245.77734375 0.6826437117769854 5 -0.0913238525390625 5 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 1 V{M(Oxidation (M))|F} 2 7 28.711 0 0 2.5395 0 0 866.4332722371083 0 866.4332722371083 0 18.253800256993955 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.5395 + + 20 + NaN NaN 105275.3 NaN 21070 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25689 100.47 NaN 90453 35 0 8326.7 0.261 + 19103 NFEELNFFF 9 34 603.7770068824999 1205.5394608317997 2 603.7769165039062 MULTI HCD FTMS 0 0 0 25683 56347.0859375 0.817181342221335 -3 0.06200408935546875 6 Unmodified _NFEELNFFF_ ENSG00000117143|ENST00000367925|UAP1;nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1 24.990960013464015 0.14443998892849796 1 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 51.186 0 0 4.2459 0 0 632.2799801676861 0 632.2799801676861 0 46.5815315012393 0 0 0 1.5 0 0 0.4247425010840047 + N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2459 + + 18 NaN NaN 100114.9 NaN 21071 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25690 100.47 NaN 39454 35 0 5344.4 0.261 + 33335 YFYPFPVPPL 10 29 620.3260711580504 1238.6375893829006 2 620.8272094726562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YFYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 12.531546534597751 0.39389615866941496 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84064.8 NaN 21072 4616 25683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25692 100.48 NaN 812560 35 0 220250 0.327 + 4641 EYNILVNFF 9 61 579.7950985922198 1157.5756442512395 2 579.7952880859375 MULTI HCD FTMS 0 0 0 25691 269352.96875 0.11751779872195621 12 -0.20813751220703125 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 118.0683919894846 0.0016252157255221692 1 {I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 70.68 0 0 6.1059 0 0 406.14708144355626 0 406.14708144355626 0 59.534021960761265 0 0 0 2.5994850021680094 0 0 0.805462187404089 + {I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1059 + + 162 NaN NaN 215362.1 NaN 21073 4617 25691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25693 100.48 NaN 532360 35 0 144250 0.261 + 15864 LPLDLEDIF 9 59 537.7893583982765 1073.5641638633529 2 537.78955078125 MULTI HCD FTMS 0 0 0 25691 287782.34375 0.5712650610182461 -5 0.10727691650390625 2 Unmodified _LPLDLEDIF_ ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP 26.88365393820708 0.12808753336095696 1 ED{I|L}{M(Oxidation (M))|F} 4 5 47.607 0 0 4.4345 0 0 551.331883964005 0 551.331883964005 0 31.409328277719766 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + ED{I|L}{M(Oxidation (M))|F} 4.4345 + + 17 NaN NaN 177268.8 NaN 21074 4617 25691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25694 100.48 NaN 74101 35 0 16373 0.261 + 30130 VGEVFLALL 9 29 480.79175237695915 959.5689518207183 2 480.79150390625 MULTI HCD FTMS 0 0 0 25691 52703.48828125 0.788670728382551 -2 0.04911041259765625 3 Unmodified _VGEVFLALL_ REV__ENSG00000075275|ENST00000674500|CELSR1;REV__nc|ENSG00000075275|Q9NYQ6-2|CELSR1;REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 11.640296217721598 0.25978676193971967 1 {I|L}{I|L} 2 -1 25.969 0 0 2.7063 0 0 715.3912114736988 0 715.3912114736988 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.7063 + + 3 NaN NaN 95478.6 NaN 21075 4617 25691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25695 100.49 NaN 197420 35 0 16662 0.261 + 10935 IYATIMDFF 9 55 560.7729837530821 1119.5314145729642 2 560.7737426757812 MULTI HCD FTMS 0 0 0 25691 27598.99609375 0.17275229731063282 -5 0.10727691650390625 4 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 57.47134341890925 0.0211188941628804 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 41.682 0 0 3.7232 0 0 692.3569576913038 0 692.3569576913038 0 12.01667520279372 0 0 0 1.5 0 0.3494850021680094 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7232 + + 93 NaN NaN 113360.6 NaN 21076 4617 25691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25696 100.49 NaN 76707 35 0 18359 0.261 -1 YIESYTSCMV 10 32 606.2507722354466 1210.486991537693 2 606.2507934570312 MULTI HCD FTMS 0 0 0 25691 13814.388671875 0.1273830539585824 12 -0.20813751220703125 5 Oxidation (M) _YIESYTSCM(Oxidation (M))V_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000431015.5_2_3:46722577-46730936:-|nuORF;ENST00000450172.5_2_3:46722734-46730936:-|nuORF 1.6526216038709556 0.46655611578153744 1 [Y{I|L}]E 3 -1 8.9524 0 0 0.73957 0 0 0 802.2719091004461 802.2719091004461 4.9730248405664685 0 0 0 0 0 0 0 0 [Y{I|L}]E 0.73957 + + 8 NaN NaN 112817.9 NaN 21077 4617 25691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25698 100.5 NaN 773880 35 0 213830 0.327 + 17010 LYITLPLAL 9 58 508.8231248830236 1015.6316968328472 2 508.8232116699219 MULTI HCD FTMS 0 0 0 25697 227952.703125 0.20778692965522774 8 -0.153228759765625 1 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 109.62928328672726 0.0030029239606406397 1 [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 9 0 + 95.09 0 0 9.3627 9.3627 98.903 0 0 0 19.621892823592972 79.60585952829945 19.621892823592972 95.09040959333973 0 2.305462187404089 1.3979400086720375 1.5994850021680094 0 + + [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 9.3627 + + 154 NaN NaN 208057.8 NaN 21078 4618 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25699 100.5 NaN 67198 35 0 9570.1 0.261 + 13502 KYPENFFLL 9 29 585.8131013046903 1169.6116496761806 2 585.8128051757812 MULTI HCD FTMS 0 0 0 25697 45329.83984375 0.6791310751811328 -14 0.23047637939453125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4324686233186 0 925.4324686233186 0 7.257724967479859 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 6 NaN NaN 92882.4 NaN 21079 4618 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25700 100.5 NaN 85197 35 0 22044 0.264 + -1 KYLEKIEEMI 10 31 437.90011881213525 1310.6785270366058 3 437.9010009765625 MULTI HCD FTMS 0 0 0 25697 28126.357421875 0.5685888834077109 -11 0.17867279052734375 3 Oxidation (M) _KYLEKIEEM(Oxidation (M))I_ REV__tr|U7SSY6|U7SSY6_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01549PE=4SV=1 1.3296431237094175 0.46826569222252473 1 {M(Oxidation (M))|F}{I|L} 2 -1 17.959 0 0 1.3702 0 0 1032.5545936075812 0 1032.5545936075812 0 17.870156338638594 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.3702 + + 3 NaN NaN 96435.1 NaN 21080 4618 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25701 100.51 NaN 83146 35 0 19041 0.261 -1 YGCIVFHG 8 36 476.72075488416306 NaN 0 476.7206726074219 PEAK HCD FTMS 0 0 0 25697 6147.75 0.45254239590918033 1 -0.016265869140625 4 Carbamidomethyl (C) _YGC(Carbamidomethyl (C))IVFHG_ chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|9;chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|9;chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|10;chr15:53523322-53540662|353|34.83|0.17|7.69|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|9;chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|9;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|8;chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|4;chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|8;chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|9;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|173|1|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|292|3|anti-sense;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|97|2|anti-sense;L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|211|3|anti-sense 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94227.8 NaN 21081 4618 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25703 100.51 NaN 172580 35 0 8028.2 0.327 + 16298 LQRRERRYLQR 11 62 525.3097703623807 1572.9074816873422 3 525.3095092773438 MULTI HCD FTMS 0 0 0 25702 80474.53125 0.6927783183227576 -5 0.1111297607421875 1 Unmodified _LQRRERRYLQR_ nc|ENSG00000179362|Q86SG4-2|HMGN2P46;nc|ENSG00000179362|Q86SG4-3|HMGN2P46;nc|ENSG00000179362|Q86SG4|HMGN2P46 0.09484139111097674 0.41850472438158626 1 DVR 3 10 7.167 0 0 0.45565 0 0 757.4718870601922 442.22995935611567 1199.701846416308 0 0 0 0 0 0 0 0 0 DVR 0.45565 - 12 + NaN NaN 112075.6 NaN 21082 4619 25702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25704 100.52 NaN 191100 35 0 29345 0.261 -1 PLSMKCTLF 9 55 548.7804212728818 1095.5462896125634 2 548.7804565429688 MULTI HCD FTMS 0 0 0 25702 87818.0234375 0.9886193673128465 -3 0.06203460693359375 2 Carbamidomethyl (C) _PLSMKC(Carbamidomethyl (C))TLF_ nc|ENSG00000140563|Q6DN12-4|MCTP2 24.020572477871973 0.15282392193088168 1 {I|L}P{I|L}D{[YD]|[{M(Oxidation (M))|F}M]}T{I|L} 8 -1 67.093 0 0 6.1242 0 0 0 162.05562769107658 162.05562769107658 56.291367667129094 0 0 0 0 1.5941876774005248 1.6989700043360187 0.3807196863200844 0 {I|L}P{I|L}D{[YD]|[{M(Oxidation (M))|F}M]}T{I|L} 6.1242 - 129 + NaN NaN 125187.7 NaN 21083 4619 25702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25705 100.52 NaN 79295 35 0 8139.8 0.261 -1 0 40 590.7862520025868 1179.5579510719735 2 590.78662109375 MULTI HCD FTMS 0 0 0 25702 27477.216796875 0.10024694164324682 14 -0.22399139404296875 3 NaN NaN 1 {I|L}V[WD]{M(Oxidation (M))|F} 5 -1 20.005 0 0 1.696 0 0 501.2224922149756 0 501.2224922149756 0 4.0359843160042175 0 0 0 0 0 0.3807196863200844 0 {I|L}V[WD]{M(Oxidation (M))|F} 1.696 - 16 NaN NaN 110675.6 NaN 21084 4619 25702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25706 100.52 NaN 125940 35 0 9891.8 0.261 + 5876 FPDFVWTL 8 33 512.760254948915 1023.50595696463 2 512.759765625 MULTI HCD FTMS 0 0 0 25702 47066.18359375 0.6019867505331922 8 -0.15323638916015625 4 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 15.847184025352803 0.47719562709667024 1 WT{I|L} 3 5 36.198 0 0 3.5367 0 0 605.2852296134504 0 605.2852296134504 0 33.09894379144197 0 0 0 1 0 0 0 + WT{I|L} 3.5367 + + 28 NaN NaN 102671.7 NaN 21085 4619 25702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25707 100.53 NaN 40444 35 0 7279.8 0.261 + 33336 YFYPFPVPPL 10 23 620.3260711580504 1238.6375893829006 2 620.3261108398438 MULTI HCD FTMS 0 0 0 25702 5114.50732421875 0.20893013680366768 -7 0.14310455322265625 5 Unmodified _YFYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 12.531546534597751 0.39389615866941496 1 M 1 10 11.99 0 0 0.96797 0 0 325.1969782434788 779.3695772760374 1104.5665555195162 0 0 0 0 0 0.5 0 0 0 M 0.96797 - 1 + NaN NaN 104996.4 NaN 21086 4619 25702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25709 100.53 NaN 196330 35 0 12987 0.327 + 34597 YPNRPPRSPVL 11 68 648.3646517825562 1294.7147506319122 2 648.36474609375 MULTI HCD FTMS 0 0 0 25708 96212.375 0.5044117655491461 1 -0.00970458984375 1 Unmodified _YPNRPPRSPVL_ REV__ENSG00000157833|ENST00000401533|GAREM2;REV__nc|ENSG00000157833|Q75VX8-2|GAREM2;REV__nc|ENSG00000157833|Q75VX8-3|GAREM2 13.614867670302875 0.33845562336951207 1 YPET{I|L}V{I|L} 7 -1 48.537 0 0 3.7488 0 0 0 476.2573641412719 476.2573641412719 16.369638510539914 0 0 0 0 0.4247425010840047 1.3010299956639813 0 0 YPET{I|L}V{I|L} 3.7488 - 116 + NaN NaN 105644.3 NaN 21087 4620 25708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25710 100.54 NaN 196990 35 0 19480 0.263 + 6437 FPIDLLDTL 9 52 523.7919282292033 1045.5693035252066 2 523.7921752929688 MULTI HCD FTMS 0 0 0 25708 89177.1875 0.2827170646810382 9 -0.1527252197265625 2 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 43.85829265575387 0.04763305254408404 1 {I|L}[KQ]{I|L}DT{I|L} 7 4 45.731 0 0 4.3738 0 0 216.07434279609532 0 216.07434279609532 0 27.7726570743409 0 0 0 1.25 0 0 0 {I|L}[KQ]{I|L}DT{I|L} 4.3738 - 82 NaN NaN 115943.9 NaN 21088 4620 25708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25712 100.54 NaN 686650 35 0 224220 0.327 + -1 LCCLFIFLVI 10 55 433.2403365726892 NaN 0 433.2547912597656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))C(Carbamidomethyl (C))LFIFLVI_ REV__ADAM29|p.L690F|1|0.32|ENSG00000168594|chr4:174977595-174977595|A/T|missense_variant 4.189502756095605 0.3365986553207265 1 T 1 -1 8.0989 0 0 0.93687 0 0 185.04511797716947 575.3516216066909 760.3967395838604 0 0 0 0 0 0 0 0.5 0 T 0.93687 - 4 + NaN NaN 191814.1 NaN 21089 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25713 100.55 NaN 159270 35 0 11425 0.261 + 14688 LGYNLFLLTF 10 51 600.836026648988 1199.6575003647758 2 600.819091796875 MULTI HCD FTMS 0 0 0 25711 11628.732421875 0.189406230902817 -16 0.2663726806640625 2 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 6.2057823575117 0.44245551207394906 1 T{I|L}[DV]N{I|L}{I|L}[{M(Oxidation (M))|F}T] 9 -1 33.082 0 0 2.7576 0 0 165.11400134262527 0 165.11400134262527 0 5.634862575211066 0 0 0 0 0 0.3494850021680094 0.8494850021680094 T{I|L}[DV]N{I|L}{I|L}[{M(Oxidation (M))|F}T] 2.7576 - 137 + NaN NaN 113320.2 NaN 21090 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25714 100.55 NaN 141150 35 0 33247 0.261 + -1 CMYSGQTNH 9 38 557.2086331567306 1112.402713380261 2 557.2085571289062 MULTI HCD FTMS 0 0 0 25711 56557.203125 0.776722785494352 10 -0.1721038818359375 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))YSGQTNH_ REV__ENSG00000134250|ENST00000256646|NOTCH2;REV__NOTCH2|p.Q1584Rfs*17|1|0.32|ENSG00000134250|chr1:119923745-119923745|T/-|frameshift_variant;REV__NOTCH2|p.R1111Gfs*96|1|0.26|ENSG00000134250|chr1:119937864-119937864|G/-|frameshift_variant;REV__NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant 1.4819007175156935 0.3397831423917744 1 C 1 -1 1.9897 0 0 0.17887 0 0 470.12384667748694 536.2511080377561 1006.3749547152431 0 0 0 0 0 0 0 0 0 C 0.17887 + + 2 + NaN NaN 110104.9 NaN 21091 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25715 100.55 NaN 69578 35 0 13264 0.261 + 22894 QYPVFPWVL 9 33 574.8103084851442 1147.6060640370883 2 574.810302734375 MULTI HCD FTMS 0 0 0 25711 21110.37890625 0.6936256981490675 -1 0.00970458984375 4 Unmodified _QYPVFPWVL_ ENSG00000128815|ENST00000325239|WDFY4;ENSG00000160796|ENST00000450053|NBEAL2;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000128815|Q6ZS81-4|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F} 1 8 10.485 0 0 0.9136 0 0 513.2925835769081 484.21857629947505 997.5111598763831 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.9136 + + 1 + NaN NaN 107084.8 NaN 21092 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25716 100.56 NaN 66019 35 0 6912.4 0.261 + 168 AEKSNLLAEL 10 38 544.3051618139557 1086.5957706947113 2 544.303955078125 MULTI HCD FTMS 0 0 0 25711 12497.4443359375 0.6832379523186043 1 -0.0259552001953125 5 Unmodified _AEKSNLLAEL_ REV__ENSG00000160789|ENST00000368300|LMNA;REV__nc|ENSG00000160789|P02545-2|LMNA;REV__nc|ENSG00000160789|P02545-3|LMNA;REV__nc|ENSG00000160789|P02545-4|LMNA;REV__nc|ENSG00000160789|P02545-5|LMNA;REV__nc|ENSG00000160789|P02545-6|LMNA 13.614867670302875 0.3837631382804675 1 {I|L}{[CP]|[EA]}{I|L} 4 -1 26.198 0 0 2.411 0 0 642.3352070730737 0 642.3352070730737 0 15.228787452803374 0 0 0 1 0 0 0 {I|L}{[CP]|[EA]}{I|L} 2.411 + + 19 NaN NaN 109262.4 NaN 21093 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25717 100.56 NaN 30879 35 0 5629.3 0.261 + -1 HSCPKLFVQG 10 21 607.8034057617188 NaN 0 607.8034057617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))HSC(Carbamidomethyl (C))PKLFVQG_ REV__ENSG00000127980|ENST00000248633|PEX1;REV__ENST00000484913.5_1_7:92148293-92157749:-|nuORF;REV__PEX1|p.G89W|1|0.14|ENSG00000127980|chr7:92522110-92522110|C/A|missense_variant 1.1933415558491238 0.33916295405077446 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94289.6 NaN 21094 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25718 100.56 NaN 47621 35 0 9855.3 0.261 + 33337 YFYPFPVPPL 10 24 620.3260711580504 1238.6375893829006 2 620.3264770507812 MULTI HCD FTMS 0 0 0 25711 16430.859375 0.6712086774741216 -5 0.0913238525390625 7 Unmodified _YFYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 18.13498045792455 0.3414835283589826 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97786 NaN 21095 4621 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25720 100.57 NaN 271670 35 0 26610 0.327 + 29602 VAPIIFLTI 9 50 493.817796588511 985.621040243822 2 493.81793212890625 MULTI HCD FTMS 0 0 0 25719 153900.40625 0.628534949369747 25 -0.391815185546875 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.07383188072201104 1 {I|L}T{I|L} 3 -1 38.94 0 0 3.9508 0 0 640.3951695433564 0 640.3951695433564 0 23.07651258738964 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}T{I|L} 3.9508 + + 33 NaN NaN 122312.2 NaN 21096 4622 25719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25721 100.57 NaN 181260 35 0 22160 0.261 + 10672 IPVMKHKR 8 47 504.80910756624485 NaN 0 504.8095397949219 PEAK HCD FTMS 0 0 0 25719 26411.013671875 0.5077339236202529 11 -0.1687469482421875 2 Unmodified _IPVMKHKR_ REV__ENSG00000095574|ENST00000368886|IKZF5 8.593279151180031 0.38822285293237185 1 PV 2 -1 9.464 0 0 0.93925 0 0 113.08531159592094 695.3698824518186 808.4551940477396 0 0 0 0 0 0 0 0 0 PV 0.93925 + + 8 + NaN NaN 110288.1 NaN 21097 4622 25719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25722 100.57 NaN 75116 35 0 10523 0.261 + 31979 VYPLAAAFAVL 11 33 567.8316365056594 1133.6487200781187 2 567.8313598632812 MULTI HCD FTMS 0 0 0 25719 28894.6328125 0.30150165802911133 11 -0.1687469482421875 3 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 15.847184025352803 0.3190053777784024 1 A{[MS]|[{M(Oxidation (M))|F}A]}V{I|L} 5 6 26.695 0 0 2.3548 0 0 614.3438465560538 0 614.3438465560538 0 19.704999916446795 0 0 0 0.9247425010840047 0 0 0 + A{[MS]|[{M(Oxidation (M))|F}A]}V{I|L} 2.3548 + + 21 NaN NaN 97481.5 NaN 21098 4622 25719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25723 100.58 NaN 43505 35 0 5336.8 0.261 + 17746 MDVQKWYLR 9 34 619.821044921875 NaN 0 619.821044921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MDVQKWYLR_ ENSG00000269964|ENST00000684080|MEI4 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92189.5 NaN 21099 4622 25719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25725 100.58 NaN 1625800 35 0 487660 0.327 + 34434 YPETLVNLIVL 11 55 637.3737954248594 1272.7330379165187 2 637.3740234375 MULTI HCD FTMS 0 0 0 25724 733940.25 0.4155593794723424 4 -0.08172607421875 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 69.33821966488729 0.015966906237807294 1 VN{I|L}{I|L}V{I|L} 6 5 73.761 0 0 5.7955 0 0 603.2896191213138 0 603.2896191213138 0 43.83925646871916 0 0 0 2.305462187404089 0 0 0.805462187404089 + VN{I|L}{I|L}V{I|L} 5.7955 + + 147 NaN NaN 330513.2 NaN 21100 4623 25724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25726 100.59 NaN 308900 35 0 67056 0.263 + 32904 YADGIFDLF 9 49 530.7529698131947 1059.4913866931893 2 530.7531127929688 MULTI HCD FTMS 0 0 0 25724 223004.625 0.40222740076755303 7 -0.11353302001953125 2 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 46.020951573049366 0.037705236580089195 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F} 8 5 + 47.88 0 0 4.5192 4.5192 90.182 0 0 0 0.45757490560674796 37.84104366207185 0.45757490560674796 47.880325230808154 0 1.4247425010840047 0 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F} 4.5192 - 66 NaN NaN 135779.1 NaN 21101 4623 25724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25727 100.59 NaN 298810 35 0 37283 0.261 + 34609 YPNTYIFDLF 10 53 646.8134140538385 1291.612275174477 2 646.8136596679688 MULTI HCD FTMS 0 0 0 25724 76627.8203125 0.5180749638713058 7 -0.11353302001953125 3 Unmodified _YPNTYIFDLF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 29.84058131909904 0.23356904650364865 1 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 6 49.24 0 0 3.8123 0 0 751.3543984256462 0 751.3543984256462 0 42.250547101681875 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.8123 + + 48 NaN NaN 141930 NaN 21102 4623 25724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25728 100.59 NaN 167340 35 0 14462 0.262 + -1 YADAVDMGPK 10 58 541.7440533255701 1081.4735537179401 2 541.7440185546875 MULTI HCD FTMS 0 0 0 25724 48475.57421875 0.3940015486068761 4 -0.08172607421875 4 Oxidation (M) _YADAVDM(Oxidation (M))GPK_ REV__ENSG00000163618|ENST00000383710|CADPS;REV__ENST00000474560.1_1_3:62385083-62423949:-|nuORF;REV__nc|ENSG00000163618|Q9ULU8-2|CADPS;REV__nc|ENSG00000163618|Q9ULU8-3|CADPS;REV__nc|ENSG00000163618|Q9ULU8-4|CADPS 15.248480904072842 0.3684828712757339 1 D{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 36.67 0 0 3.3908 0 0 575.1988782802433 0 575.1988782802433 0 2.23320034371433 0 0 0 0.9247425010840047 0 0 0 D{I|L}{I|L}{M(Oxidation (M))|F} 3.3908 - 196 + NaN NaN 123036.1 NaN 21103 4623 25724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25729 100.6 NaN 120930 35 0 12543 0.261 + 2457 DQSLVAIPME 10 43 551.7782111749489 1101.5418694166976 2 552.2926635742188 MULTI HCD FTMS 0 0 0 25724 6877.47509765625 0.540013521550287 -4 0.07151031494140625 5 Unmodified _DQSLVAIPME_ ENSG00000185863|ENST00000413619|TMEM210 10.073929032068715 0.4168838835836452 1 EA[KQ][PS]A{[QN]|[E{I|L}]|[KN]} 9 7 20.634 0 0 1.8732 0 0 130.04521901891547 0 130.04521901891547 0 16.654237220656686 0 0 0 0 0 0.75 0 EA[KQ][PS]A{[QN]|[E{I|L}]|[KN]} 1.8732 - 26 + NaN NaN 104361.4 NaN 21104 4623 25724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25730 100.6 NaN 59183 35 0 7867.2 0.261 + 27481 SYYGPLNLLTF 11 40 644.3346554594897 1286.6547579857793 2 644.3343505859375 MULTI HCD FTMS 0 0 0 25724 14960.8876953125 0.003831546352189262 62 -1.0268630981445312 6 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 21.799462835604743 0.267142977351036 1 {I|L}{I|L}T{M(Oxidation (M))|F} 4 7 37.167 0 0 2.8887 0 0 794.3550282209 0 794.3550282209 0 33.979400086720375 0 0 0 1 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 2.8887 + + 35 NaN NaN 98861.2 NaN 21105 4623 25724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25732 100.61 NaN 186300 35 0 48080 0.327 + 14438 LERCDIFTI 9 39 555.2868505775424 1108.5591482218847 2 555.7886962890625 MULTI HCD FTMS 0 0 0 25731 42996.10546875 0.2034682011471263 -8 0.15647125244140625 1 Unmodified _LERCDIFTI_ chr12:111943369-111975028|111|10.31|0.05|7.75|-|2|TE_info:L1M4,L1M4_dup15030,L1,LINE,donor,+,111975028,111975155|TMEM116,None|1 24.990960013464015 0.14443998892849796 1 {M(Oxidation (M))|F}T{I|L} 3 6 35.445 0 0 3.1974 0 0 729.3490650489398 0 729.3490650489398 0 26.49288766643714 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}T{I|L} 3.1974 + + 27 NaN NaN 108575.8 NaN 21106 4624 25731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25733 100.61 NaN 56769 35 0 4988.3 0.261 + 19104 NFEELNFFF 9 27 603.7770068824999 1205.5394608317997 2 604.2788696289062 MULTI HCD FTMS 0 0 0 25731 14742.1572265625 0.32127622090535213 5 -0.07787322998046875 2 Unmodified _NFEELNFFF_ ENSG00000117143|ENST00000367925|UAP1;nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1 21.536976647645854 0.1742816388551942 1 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 51.186 0 0 4.2459 0 0 632.2807076914058 0 632.2807076914058 0 51.18562527100117 0 0 0 1.5 0 0 0.4247425010840047 + N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2459 + + 15 NaN NaN 90875.2 NaN 21107 4624 25731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25734 100.61 NaN 113180 35 0 11024 0.261 + 8185 GQDLVAVMNAN 11 44 566.2762038707083 1130.5378548082165 2 566.29736328125 MULTI HCD FTMS 0 0 0 25731 5972.015625 0.163962531883087 -11 0.218475341796875 3 Unmodified _GQDLVAVMNAN_ REV__ENSG00000135776|ENST00000344517|ABCB10 7.608950283845883 0.38555039536024605 1 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7217 0 0 866.3913837162228 0 866.3913837162228 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.7217 + + 20 + NaN NaN 107955 NaN 21108 4624 25731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25735 100.62 NaN 23569 35 0 4444.2 0.261 -1 SASERCAKNGY 11 20 621.780517578125 NaN 0 621.780517578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _SASERC(Carbamidomethyl (C))AKNGY_ ENSG00000165097|ENST00000650836|KDM1B;KDM1B|p.W82Gfs*82|1|0.19|ENSG00000165097|chr6:18162863-18162863|T/-|frameshift_variant;nc|ENSG00000165097|Q8NB78-2|KDM1B 1.0714618166137932 0.3390807148598227 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103107.4 NaN 21109 4624 25731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25737 100.62 NaN 472970 35 0 96968 0.327 + 4642 EYNILVNFF 9 49 579.7950985922198 1157.5756442512395 2 579.7950439453125 MULTI HCD FTMS 0 0 0 25736 136270.296875 0.05945427442012357 20 -0.3156890869140625 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 63.960520009940105 0.0120409805053046 1 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 56.058 0 0 4.8427 0 0 519.2348499982437 0 519.2348499982437 0 50.57319389984244 0 0 0 1.7302046884880937 0 0 0.3807196863200844 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8427 + + 63 NaN NaN 151965.1 NaN 21110 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25738 100.63 NaN 233320 35 0 56254 0.261 + 17011 LYITLPLAL 9 41 508.8231248830236 1015.6316968328472 2 508.82330322265625 MULTI HCD FTMS 0 0 0 25736 72013.328125 0.06564268876927014 15 -0.23724365234375 2 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 50.855029805455786 0.030374663808198754 1 [Y{I|L}]{I|L}T{I|L}[{I|L}P]A{I|L} 9 0 + 50.384 0 0 4.9609 4.9609 91.018 0 0 0 5.6424927368725974 45.78009063929706 5.6424927368725974 50.38418440905893 0 1.805462187404089 0 0.4247425010840047 0 + + [Y{I|L}]{I|L}T{I|L}[{I|L}P]A{I|L} 4.9609 + + 53 NaN NaN 130549.1 NaN 21111 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25739 100.63 NaN 206320 35 0 18725 0.261 + 10936 IYATIMDFF 9 57 560.7729837530821 1119.5314145729642 2 560.7728271484375 MULTI HCD FTMS 0 0 0 25736 74708.5 0.46762806008563795 3 -0.05218505859375 3 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 67.34385681178166 0.00994769994983633 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 41.555 0 0 3.7118 0 0 692.3574598018884 0 692.3574598018884 0 29.42364741441212 0 0 0 1.4247425010840047 0 0.2614393726401688 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7118 + + 227 + NaN NaN 115972.7 NaN 21112 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25740 100.63 NaN 197100 35 0 17989 0.261 -1 0 46 595.3000734521801 594.29279698558 1 595.2999877929688 MULTI HCD FTMS 0 0 0 25736 60135.07421875 0.643431622726685 -7 0.1269683837890625 4 NaN NaN 1 {I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 3.3008 0 0 0.55541 0 0 169.0625551069195 0 169.0625551069195 0 3.300756084811813 0 0 0 0 0 0 0 {I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.55541 - 5 + NaN NaN 109719.2 NaN 21113 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25741 100.64 NaN 96379 35 0 21183 0.263 + 30131 VGEVFLALL 9 28 480.79175237695915 959.5689518207183 2 480.79193115234375 MULTI HCD FTMS 0 0 0 25736 25752.8046875 0.38537265545684835 6 -0.09069061279296875 5 Unmodified _VGEVFLALL_ REV__ENSG00000075275|ENST00000674500|CELSR1;REV__nc|ENSG00000075275|Q9NYQ6-2|CELSR1;REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 11.640296217721598 0.25978676193971967 1 {I|L}{I|L} 2 -1 25.969 0 0 2.7063 0 0 715.3912831037125 0 715.3912831037125 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.7063 + + 4 NaN NaN 101882.7 NaN 21114 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25742 100.64 NaN 206190 35 0 39165 0.261 -1 0 52 512.3479558289852 1022.6813587247703 2 512.348388671875 MULTI HCD FTMS 0 0 0 25736 30430.3515625 0.29145532252026507 -7 0.1269683837890625 6 NaN NaN 1 W[{I|L}T] 3 -1 11.254 0 0 1.1005 0 0 604.4601195663703 0 604.4601195663703 0 6.3059715953668425 0 0 0 0 0 0.3807196863200844 0 W[{I|L}T] 1.1005 - 10 + NaN NaN 129683.3 NaN 21115 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25743 100.64 NaN 39589 35 0 6794.5 0.261 + 20392 NYVKANYLPY 10 30 622.8168334960938 NaN 0 622.8168334960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 6.2057823575117 0.3348729994311477 1 {I|L} 1 9 16.99 0 0 1.3672 0 0 852.4318273908219 274.08298669986567 1126.5148140906877 0 0 0 0 0 1 0 0 0 + {I|L} 1.3672 + + 5 + NaN NaN 89279.4 NaN 21116 4625 25736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25745 100.65 NaN 565730 35 0 84434 0.327 + 16647 LWDVIIAEL 9 48 536.3078173794748 1070.6010818257496 2 536.3079833984375 MULTI HCD FTMS 0 0 0 25744 189691.03125 0.5491059373891575 4 -0.0480804443359375 1 Unmodified _LWDVIIAEL_ ENSG00000091136|ENST00000222399|LAMB1 41.8396318013385 0.056899836730939755 1 {I|L}{I|L}AE{I|L} 5 4 52.435 0 0 4.8977 0 0 513.2582301850215 0 513.2582301850215 0 37.830918867322296 0 0 0 1.6861818737241734 0 0 0 + {I|L}{I|L}AE{I|L} 4.8977 + + 50 NaN NaN 183254.5 NaN 21117 4626 25744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25746 100.65 NaN 76546 35 0 8384.6 0.261 + 13503 KYPENFFLL 9 39 585.8131013046903 1169.6116496761806 2 585.8134765625 MULTI HCD FTMS 0 0 0 25744 28178.658203125 0.42217229331968414 -6 0.11737823486328125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 [YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 9 4 + 39.639 0 0 3.3891 3.3891 88.613 0 0 0 4.1934746919729875 38.925449767853316 4.1934746919729875 39.63878728569697 0 1.3494850021680094 0 0 0 [YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 3.3891 - 13 NaN NaN 94395.9 NaN 21118 4626 25744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25747 100.66 NaN 67309 35 0 11205 0.261 + 16641 LWDFLLLSS 9 38 547.2990587498668 1092.5835645665336 2 547.2991333007812 MULTI HCD FTMS 0 0 0 25744 30175.80078125 0.5910487654319099 4 -0.0480804443359375 3 Unmodified _LWDFLLLSS_ ENST00000492001.1_1_7:44796309-44796525:+|nuORF 16.942295170755138 0.21397866736869717 1 {I|L}WD[{I|L}V]{I|L} 6 4 57.396 0 0 5.2532 0 0 0 350.13215051822505 350.13215051822505 50.406075122407685 0 0 0 0 1 1.6989700043360187 0.5 0 {I|L}WD[{I|L}V]{I|L} 5.2532 - 19 + NaN NaN 96950.2 NaN 21119 4626 25744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25748 100.66 NaN 96067 35 0 21157 0.262 + 33088 YDRQAIHWMH 10 35 452.8806010000084 NaN 0 452.8703308105469 PEAK HCD FTMS 0 0 0 25744 17193.66796875 0.7183009399267873 1 -0.01627349853515625 4 Unmodified _YDRQAIHWMH_ REV__ENSG00000114026|ENST00000344629|OGG1;REV__nc|ENSG00000114026|O15527-2|OGG1;REV__nc|ENSG00000114026|O15527-3|OGG1;REV__nc|ENSG00000114026|O15527-4|OGG1;REV__nc|ENSG00000114026|O15527-7|OGG1;REV__nc|ENSG00000114026|O15527-8|OGG1 0.5059551277355931 0.3397512615639078 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99143.9 NaN 21120 4626 25744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25750 100.67 NaN 476920 35 0 80865 0.327 -1 0 70 526.3723892954026 1050.7302256576052 2 526.37255859375 MULTI HCD FTMS 0 0 0 25749 140429.328125 0.7269361868506189 -2 0.04253387451171875 1 NaN NaN 1 Q{I|L}{I|L} 3 -1 25.93 0 0 2.4678 0 0 678.5033177032304 0 678.5033177032304 0 18.143265708843046 0 0 0 0.4247425010840047 0 0 0 Q{I|L}{I|L} 2.4678 - 31 NaN NaN 152260.2 NaN 21121 4627 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25751 100.67 NaN 97722 35 0 7651.7 0.261 + -1 LASVCLACLF 10 40 548.7804212728818 1095.5462896125634 2 548.7800903320312 MULTI HCD FTMS 0 0 0 25749 21883.94140625 0.24636045609425278 5 -0.0611114501953125 2 Carbamidomethyl (C) _LASVC(Carbamidomethyl (C))LACLF_ REV__ENSG00000186532|ENST00000305513|SMYD4;REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 13.90604991867851 0.3810395177745597 1 VT{I|L}{M(Oxidation (M))|F} 4 -1 34.412 0 0 3.1411 0 0 617.2667008447885 0 617.2667008447885 0 8.214562785677657 0 0 0 1 0 0 0 VT{I|L}{M(Oxidation (M))|F} 3.1411 - 58 + NaN NaN 92632 NaN 21122 4627 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25753 100.67 NaN 118820 35 0 11690 0.327 + 14689 LGYNLFLLTF 10 38 600.836026648988 1199.6575003647758 2 600.8187255859375 MULTI HCD FTMS 0 0 0 25752 15692.70703125 0.25559935370599474 -11 0.1987152099609375 1 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}{I|L}[{M(Oxidation (M))|F}T] 4 -1 14.693 0 0 1.2247 0 0 707.3631105716103 0 707.3631105716103 0 3.0102999566398108 0 0 0 0 0 0 0 {I|L}{I|L}[{M(Oxidation (M))|F}T] 1.2247 + + 19 + NaN NaN 113015.8 NaN 21123 4628 25752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25754 100.68 NaN 73634 35 0 9554.6 0.264 + -1 VRQLAEDFSPM 11 36 436.8797600483085 1307.6174507451256 3 437.21441650390625 MULTI HCD FTMS 0 0 0 25752 39650.3359375 0.6317339301429081 43 -0.7204208374023438 2 Oxidation (M) _VRQLAEDFSPM(Oxidation (M))_ REV__ENSG00000146477|ENST00000275300|SLC22A3 0.40826533853263924 0.41713015341995335 1 H 1 -1 2.2185 0 0 0.16966 0 0 733.8092364890693 433.72834192447505 1167.5375784135445 0 0 0 0 0 0 0 0 0 H 0.16966 - 2 + NaN NaN 93151 NaN 21124 4628 25752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25756 100.68 NaN 484960 35 0 84682 0.327 + 15865 LPLDLEDIF 9 57 537.7893583982765 1073.5641638633529 2 537.7894287109375 MULTI HCD FTMS 0 0 0 25755 149343.1875 0.29645510564734523 7 -0.10691070556640625 1 Unmodified _LPLDLEDIF_ ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP 26.88365393820708 0.12808753336095696 1 ED{I|L}{M(Oxidation (M))|F} 4 5 46.058 0 0 4.2902 0 0 551.333787986525 0 551.333787986525 0 29.85985638199878 0 0 0 1.3807196863200843 0 0.3807196863200844 0 + ED{I|L}{M(Oxidation (M))|F} 4.2902 + + 43 NaN NaN 165254.7 NaN 21125 4629 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25757 100.69 NaN 229450 35 0 22523 0.261 + 19111 NFFPIAGLEF 10 46 577.7983594505324 1153.5821659678647 2 577.7986450195312 MULTI HCD FTMS 0 0 0 25755 86583.8125 0.8194075485531035 -3 0.03534698486328125 2 Unmodified _NFFPIAGLEF_ ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2 49.55428908609986 0.07941048486997417 1 A[{I|L}P]NE{M(Oxidation (M))|F} 6 6 51.159 0 0 4.4348 0 0 464.22758681465 0 464.22758681465 0 44.63615337528019 0 0 0 2.274227503252014 0 0 0 A[{I|L}P]NE{M(Oxidation (M))|F} 4.4348 - 116 NaN NaN 113233 NaN 21126 4629 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25758 100.69 NaN 100070 35 0 8787.1 0.261 -1 FSEISKLLM 9 45 542.2898060711127 NaN 0 542.2896118164062 PEAK HCD FTMS 0 0 0 25755 29580.966796875 0.6559784019157026 -3 0.03534698486328125 3 Oxidation (M) _FSEISKLLM(Oxidation (M))_ ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF;nc|ENSG00000053524|Q86YR7-4|MCF2L2 18.1463463914782 0.1998403495282098 1 {I|L}{I|L}{[QG]|[NA]}D{I|L}{I|L} 7 -1 22.796 0 0 2.1058 0 0 165.0398323012691 162.05593286685783 327.09576516812695 0 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}{I|L}{[QG]|[NA]}D{I|L}{I|L} 2.1058 - 81 + NaN NaN 112789.2 NaN 21127 4629 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25760 100.7 NaN 355060 35 0 44705 0.327 + 29603 VAPIIFLTI 9 46 493.817796588511 985.621040243822 2 493.8179016113281 MULTI HCD FTMS 0 0 0 25759 193092.3125 0.7885961435587494 33 -0.5745925903320312 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.07383188072201104 1 {I|L}T{I|L} 3 -1 38.698 0 0 3.9262 0 0 640.3924427716812 0 640.3924427716812 0 17.271212547196626 0 0 0 0.8252574989159953 0 0.4247425010840047 0 {I|L}T{I|L} 3.9262 + + 41 NaN NaN 137011.5 NaN 21128 4630 25759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25761 100.7 NaN 111070 35 0 11373 0.261 + 30007 VFNGLSILASF 11 49 584.3240424271753 1166.6335319211505 2 584.3243408203125 MULTI HCD FTMS 0 0 0 25759 70593.21875 0.9364457780756039 -6 0.090606689453125 2 Unmodified _VFNGLSILASF_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 63.227496030279354 0.027100857025507283 1 S{I|L}{I|L}AS{M(Oxidation (M))|F} 6 5 51.643 0 0 4.4267 0 0 530.2854046002881 0 530.2854046002881 0 35.44531259372398 0 0 0 2.1989700043360187 0 0.4247425010840047 0 + S{I|L}{I|L}AS{M(Oxidation (M))|F} 4.4267 + + 51 + NaN NaN 113601.7 NaN 21129 4630 25759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25762 100.7 NaN 335570 35 0 39693 0.261 + -1 ILSPMELLL 9 42 522.8038704550287 1043.5931879768573 2 522.803955078125 MULTI HCD FTMS 0 0 0 25759 52324.44921875 0.2698415349219943 -6 0.090606689453125 3 Oxidation (M) _ILSPM(Oxidation (M))ELLL_ REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF 23.1484247019978 0.1603590852062899 1 V{I|L}{I|L}{I|L} 4 -1 40.79 0 0 3.9086 0 0 587.2626209943375 0 587.2626209943375 0 29.820618910682484 0 0 0 1.1861818737241734 0 0 0 V{I|L}{I|L}{I|L} 3.9086 - 19 NaN NaN 136359.6 NaN 21130 4630 25759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25763 100.71 NaN 51334 35 0 7366.2 0.261 + 33338 YFYPFPVPPL 10 35 620.3260711580504 1238.6375893829006 2 620.3258056640625 MULTI HCD FTMS 0 0 0 25759 17834.7109375 0.7285567034738636 4 -0.0549774169921875 4 Unmodified _YFYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 7.910154910731844 0.4334339971971892 1 {M(Oxidation (M))|F} 1 9 1.1092 0 0 0.089554 0 0 635.4043262987194 453.15110193424067 1088.5554282329601 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.089554 + + 2 + NaN NaN 91281.3 NaN 21131 4630 25759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25765 100.71 NaN 825690 35 0 274360 0.327 + 34435 YPETLVNLIVL 11 50 637.3737954248594 1272.7330379165187 2 637.3739013671875 MULTI HCD FTMS 0 0 0 25764 309610.6875 0.1753025878816502 12 -0.18918609619140625 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 37.07464296494664 0.15579028104840176 1 VN{I|L}{I|L}V{I|L} 6 5 71.146 0 0 5.59 0 0 603.2880116193375 0 603.2880116193375 0 59.71971276399756 0 0 0 2.4247425010840047 0 0 0.4247425010840047 + VN{I|L}{I|L}V{I|L} 5.59 + + 54 NaN NaN 225295 NaN 21132 4631 25764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25766 100.72 NaN 91702 35 0 18522 0.262 + 32905 YADGIFDLF 9 38 530.7529698131947 1059.4913866931893 2 530.7529907226562 MULTI HCD FTMS 0 0 0 25764 35088.35546875 0.06328791619188735 15 -0.2379150390625 2 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 25.399314129420986 0.14091189997036632 1 D{I|L}{M(Oxidation (M))|F} 3 6 38.5 0 0 3.6338 0 0 666.302049705275 0 666.302049705275 0 33.01538440272459 0 0 0 1.2302046884880937 0 0 0 + D{I|L}{M(Oxidation (M))|F} 3.6338 + + 31 NaN NaN 104881.7 NaN 21133 4631 25764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25767 100.72 NaN 178000 35 0 20583 0.261 + 10673 IPVMKHKR 8 45 504.80910756624485 NaN 0 504.80914306640625 PEAK HCD FTMS 0 0 0 25764 8420.7021484375 0.1618823190424003 20 -0.33390045166015625 3 Unmodified _IPVMKHKR_ REV__ENSG00000095574|ENST00000368886|IKZF5 8.593279151180031 0.38822285293237185 1 PV 2 -1 10.969 0 0 1.0886 0 0 113.0845946441661 695.3759249322874 808.4605195764535 0 0 0 0 0 0 0 0 0 PV 1.0886 + + 4 + NaN NaN 109110.4 NaN 21134 4631 25764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25769 100.73 NaN 231550 35 0 52386 0.327 + 4643 EYNILVNFF 9 45 579.7950985922198 1157.5756442512395 2 580.2970581054688 MULTI HCD FTMS 0 0 0 25768 93605.859375 0.058532557987025 27 -0.44751739501953125 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 34.93206674587334 0.08860942999206235 1 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 54.949 0 0 4.7469 0 0 519.2339549952918 0 519.2339549952918 0 54.94850021680094 0 0 0 1.8494850021680094 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7469 + + 31 NaN NaN 122810.4 NaN 21135 4632 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25770 100.73 NaN 39154 35 0 5435.8 0.261 + 27482 SYYGPLNLLTF 11 35 644.3348806174183 NaN 0 644.3358764648438 PEAK HCD FTMS 0 0 0 25768 36536.65625 1 0 0 2 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 12.174745833636585 0.30758389568133715 1 {M(Oxidation (M))|F} 1 10 14.732 0 0 1.145 0 0 873.497048977221 263.10398279361567 1136.6010317708367 0 0 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.145 + + 12 + NaN NaN 89621.1 NaN 21136 4632 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25772 100.74 NaN 472890 35 0 142100 0.327 + 32488 WFDPAIFTI 9 50 555.2868505775424 1108.5591482218847 2 555.2870483398438 MULTI HCD FTMS 0 0 0 25771 141660.859375 0.5605909126013039 1 -0.01602935791015625 1 Unmodified _WFDPAIFTI_ ENSG00000163655|ENST00000496455|GMPS 58.678817012210395 0.019429721296335044 1 [W{M(Oxidation (M))|F}]D[PA]{I|L}{M(Oxidation (M))|F}T{I|L} 9 0 + 53.746 0 0 4.8483 4.8483 90.398 0 0 0 3.65279269351241 32.77696854845523 3.65279269351241 39.30400924012389 0 1.805462187404089 0 0.3807196863200844 0 + + [W{M(Oxidation (M))|F}]D[PA]{I|L}{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T]{I|L}[WH][RH]{I|L} 4.8483;1.3028 +;- + 78 NaN NaN 164549.1 NaN 21137 4633 25771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25773 100.74 NaN 132080 35 0 11179 0.261 + -1 WFCCFIKK 8 49 566.2762038707083 1130.5378548082165 2 566.2978515625 MULTI HCD FTMS 0 0 0 25771 13889.560546875 0.3813398452066273 -3 0.03894805908203125 2 Carbamidomethyl (C) _WFC(Carbamidomethyl (C))CFIKK_ REV__ENSG00000186188|ENST00000371481|FFAR4;REV__nc|ENSG00000186188|Q5NUL3-1|FFAR4 14.581692164780916 0.48650662947107914 1 W{M(Oxidation (M))|F}D 3 -1 27.567 0 0 2.4384 0 0 0 679.3446044535584 679.3446044535584 8.102554773050965 0 0 0 0 0.6139829889124311 0 0 0 W{M(Oxidation (M))|F}D 2.4384 - 77 + NaN NaN 101580 NaN 21138 4633 25771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25774 100.74 NaN 51054 35 0 9933.3 0.261 + -1 YNIKHFFMK 9 36 622.3165400634206 1242.618527193641 2 622.316162109375 MULTI HCD FTMS 0 0 0 25771 15120.83203125 0.5047073806941588 1 -0.01602935791015625 3 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 1 [YN]{I|L} 3 -1 33.468 0 0 2.6933 0 0 0 849.4059166802223 849.4059166802223 33.46787486224656 0 0 0 0 1 1.3010299956639813 0 0 [YN]{I|L} 2.6933 + + 14 NaN NaN 95139 NaN 21139 4633 25771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25775 100.75 NaN 30383 35 0 5451.7 0.261 + -1 YLCCCSCTF 9 21 607.2099277913488 NaN 0 607.29833984375 PEAK HCD FTMS 0 0 0 25771 11315.0341796875 0.6817711087231976 7 -0.12395477294921875 4 3 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))SCTF_ REV__ENSG00000164054|ENST00000296444|SHISA5;REV__ENST00000460758.1_1_3:48511100-48514492:-|nuORF;REV__ENST00000465449.5_1_3:48510508-48514931:-|nuORF;REV__ENST00000466424.5_1_3:48509548-48511229:-|nuORF;REV__ENST00000494854.5_1_3:48510739-48514492:-|nuORF;REV__nc|ENSG00000164054|Q8N114-2|SHISA5;REV__nc|ENSG00000164054|Q8N114-3|SHISA5;REV__nc|ENSG00000164054|Q8N114-4|SHISA5;REV__nc|ENSG00000164054|Q8N114-5|SHISA5;REV__SCMH1-SHISA5|1|fusion 0.6014990680409731 0.29233206172879045 1 EN 2 -1 10.969 0 0 0.90474 0 0 276.96670517262856 689.3169649713499 966.2836701439785 0 0 0 0 0 0 0 0 0 EN 0.90474 - 3 + NaN NaN 95486.3 NaN 21140 4633 25771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25777 100.75 NaN 78145 35 0 13641 0.327 + 17012 LYITLPLAL 9 41 508.8231248830236 1015.6316968328472 2 508.8226318359375 MULTI HCD FTMS 0 0 0 25776 27960.68359375 0.025487149375108386 24 -0.4123687744140625 1 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 7.910154910731844 0.2910521888787154 1 {I|L} 1 8 7.2185 0 0 0.71074 0 0 490.2761803306972 409.2452133550318 899.521393685729 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.71074 + + 3 + NaN NaN 107850.2 NaN 21141 4634 25776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25778 100.76 NaN 69108 35 0 13437 0.261 + 5009 FCPHPHPA 8 30 453.20969806610617 NaN 0 453.2095031738281 PEAK HCD FTMS 0 0 0 25776 33008.6640625 0.7444901660231912 37 -0.6432876586914062 2 Unmodified _FCPHPHPA_ REV__ENST00000602410.1_1_2:233387240-233387915:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93661.5 NaN 21142 4634 25776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25779 100.76 NaN 106330 35 0 11484 0.261 + 10937 IYATIMDFF 9 41 560.7729837530821 1119.5314145729642 2 561.2736206054688 MULTI HCD FTMS 0 0 0 25776 9877.4228515625 0.14566004682789568 12 -0.19928741455078125 3 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 15.847184025352803 0.2234401846867398 1 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 28.672 0 0 2.5611 0 0 692.3579212772084 0 692.3579212772084 0 10.969100130080562 0 0 0 1 0 0 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5611 + + 32 + NaN NaN 100130.6 NaN 21143 4634 25776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25780 100.76 NaN 64608 35 0 9716.2 0.261 + 19903 NYFEVPLPYF 10 35 644.8160993372544 NaN 0 644.8174438476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NYFEVPLPYF_ ENSG00000163840|ENST00000296161|DTX3L 8.155526934196011 0.33320428830121973 1 V 1 9 9.732 0 0 0.75581 0 0 635.331037930565 550.1958712213499 1185.5269091519149 0 0 0 0 0 0.4247425010840047 0 0 0 + V 0.75581 + + 25 + NaN NaN 93506.8 NaN 21144 4634 25776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25782 100.77 NaN 442330 35 0 146440 0.327 -1 SRKKPYECTQ 10 59 432.88520627292405 NaN 0 432.8851623535156 PEAK HCD FTMS 0 0 0 25781 153014.4375 0.5274299072366767 56 -0.9323577880859375 1 Carbamidomethyl (C) _SRKKPYEC(Carbamidomethyl (C))TQ_ ENSG00000198429|ENST00000429654|ZNF69 0.6268255596534771 0.33964781322640114 1 T 1 -1 8.8515 0 0 1.0248 0 0 184.3323499464356 575.3512056940061 759.6835556404417 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.0248 + + 8 + NaN NaN 161666.3 NaN 21145 4635 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25783 100.77 NaN 239740 35 0 25225 0.261 -1 0 50 595.3000734521801 594.29279698558 1 595.30029296875 MULTI HCD FTMS 0 0 0 25781 76640.5234375 0.82003617693445 3 -0.0559844970703125 2 NaN NaN 1 Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3 -1 10.458 0 0 1.7597 0 0 179.11886252827958 0 179.11886252827958 0 7.7815125038364386 0 0 0 0 0 0 0 Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.7597 - 14 + NaN NaN 123597.6 NaN 21146 4635 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25784 100.78 NaN 251320 35 0 45634 0.261 + 4644 EYNILVNFF 9 49 579.7950985922198 1157.5756442512395 2 579.795166015625 MULTI HCD FTMS 0 0 0 25781 53404.453125 0.023300184149909784 30 -0.5229034423828125 3 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 41.95555342248728 0.056367691549927025 1 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 48.928 0 0 4.2268 0 0 519.2339344709 0 519.2339344709 0 42.64645333192 0 0 0 1.6989700043360187 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2268 + + 91 NaN NaN 145983.3 NaN 21147 4635 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25785 100.78 NaN 149300 35 0 21956 0.261 + 29818 VEPSLLEIL 9 33 506.799907118804 1011.585261304408 2 506.79986572265625 MULTI HCD FTMS 0 0 0 25781 39339.05078125 0.3955215656481634 -1 0.01629638671875 4 Unmodified _VEPSLLEIL_ ENSG00000117400|ENST00000372470|MPL 25.399314129420986 0.14091189997036632 1 {I|L}E{I|L}{I|L} 4 5 41.983 0 0 4.1502 0 0 525.2805042951187 0 525.2805042951187 0 41.9825221775622 0 0 0 1.305462187404089 0 0 0 + {I|L}E{I|L}{I|L} 4.1502 + + 26 NaN NaN 102744.9 NaN 21148 4635 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25786 100.78 NaN 81945 35 0 12923 0.261 + 29747 VDSYLPVIL 9 39 509.7943384061866 1017.5741238791733 2 509.7948303222656 MULTI HCD FTMS 0 0 0 25781 21467.470703125 0.3925028978810294 3 -0.0559844970703125 5 Unmodified _VDSYLPVIL_ ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP 11.640296217721598 0.25978676193971967 1 V{I|L}{I|L} 3 6 36.198 0 0 3.5573 0 0 674.3266564087439 0 674.3266564087439 0 36.197887582883936 0 0 0 1 0 0 0 + V{I|L}{I|L} 3.5573 + + 12 NaN NaN 107777.5 NaN 21149 4635 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25787 100.79 NaN 82391 35 0 7274.1 0.261 -1 CLWMLVIF 8 46 541.284184311702 NaN 0 541.2725830078125 PEAK HCD FTMS 0 0 0 25781 3943.195068359375 0.7289669468859195 -1 0.01629638671875 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LWMLVIF_ ENST00000484624.1_7:74233985-74234647:-|nuORF 6.354104778181461 0.38822285293237185 1 VW 2 -1 7.9588 0 0 0.73655 0 0 165.1055257505539 627.2808321588499 792.3863579094038 0 0 0 0 0 0 0 0 0 VW 0.73655 - 16 + NaN NaN 93552.3 NaN 21150 4635 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25789 100.79 NaN 78438 35 0 25705 0.327 -1 0 34 469.3284673093094 936.6423816854189 2 469.3282470703125 MULTI HCD FTMS 0 0 0 25788 15228.1103515625 0.6478519939947666 1 -0.02060699462890625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 94565.3 NaN 21151 4636 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25790 100.8 NaN 80995 35 0 6430.4 0.261 + 10938 IYATIMDFF 9 38 560.7729837530821 1119.5314145729642 2 560.7717895507812 MULTI HCD FTMS 0 0 0 25788 20479.662109375 0.12818975971163088 14 -0.23974609375 2 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 7.289230182591677 0.29575926068275815 1 {I|L}M[YG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 5 21.215 0 0 1.895 0 0 228.14756972480626 0 228.14756972480626 0 16.610688275226053 0 0 0 0.6989700043360187 0 0 0 {I|L}M[YG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.895 - 46 NaN NaN 90762.6 NaN 21152 4636 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25791 100.8 NaN 52514 35 0 5826.2 0.261 -1 THCGSCDSQA 10 40 533.1908772074551 NaN 0 533.1907348632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _THCGSC(Carbamidomethyl (C))DSQA_ ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1;nc|ENSG00000138759|Q86XX4|FRAS1 0.35063188157827746 0.339884196735365 1 C(Carbamidomethyl (C)) 1 -1 1.5938 0 0 0.14974 0 0 532.6206937686226 368.68796716861567 901.3086609372383 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.14974 + + 2 + NaN NaN 107700.9 NaN 21153 4636 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25792 100.8 NaN 44965 35 0 9193.2 0.261 + 12073 KKASIVLAYT 10 32 547.3327156666238 NaN 0 547.3323974609375 PEAK HCD FTMS 0 0 0 25788 15301.732421875 0.44003420977486973 -39 0.6629104614257812 4 Unmodified _KKASIVLAYT_ REV__ENST00000422086.5_2_22:21362941-21363382:-|nuORF;REV__ENST00000442739.1_1_22:21357241-21363382:-|nuORF 3.2813086475875832 0.33737594360511275 1 {I|L} 1 -1 6.9897 0 0 0.6397 0 0 626.4095891928195 350.13471399478755 976.544303187607 0 0 0 0 0 0 0 0 0 {I|L} 0.6397 + + 4 + NaN NaN 90565.2 NaN 21154 4636 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25794 100.81 NaN 145440 35 0 20014 0.327 + 14690 LGYNLFLLTF 10 39 600.836026648988 1199.6575003647758 2 601.3214721679688 MULTI HCD FTMS 0 0 0 25793 22238.611328125 0.7050255077241439 -1 0.02060699462890625 1 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 3.2813086475875832 0.45793521633868084 1 {I|L}{I|L}[{M(Oxidation (M))|F}T] 4 -1 11.682 0 0 0.97381 0 0 707.3621293093976 0 707.3621293093976 0 1.7609125905568117 0 0 0 0 0 0 0 {I|L}{I|L}[{M(Oxidation (M))|F}T] 0.97381 + + 20 + NaN NaN 107275.5 NaN 21155 4637 25793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25795 100.82 NaN 59873 35 0 6109.7 0.261 + 27957 TEWTLWVF 8 33 541.2728435629064 1080.5311341926126 2 541.2743530273438 MULTI HCD FTMS 0 0 0 25793 18064.736328125 0.4902138961191081 -1 0.02060699462890625 2 Unmodified _TEWTLWVF_ chr4:188091941-188097061|202|10.38|0.22|5.59|-|ENST00000512729|TRIML2,TRIML2;chr4:188099175-188101056|229|12.55|0.3|5.38|-|ENST00000512729|TRIML2,TRIML2;chr4:188104932-188105180|220|10.44|0.2|5.7|-|ENST00000512729|TRIML2,TRIML2;ENSG00000179046|ENST00000682553|TRIML2 14.581692164780916 0.48650662947107914 1 WV{M(Oxidation (M))|F} 3 5 28.416 0 0 2.6299 0 0 630.3037915185877 0 630.3037915185877 0 21.42667503568731 0 0 0 1 0 0 0 + WV{M(Oxidation (M))|F} 2.6299 + + 20 + NaN NaN 88608.8 NaN 21156 4637 25793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25796 100.82 NaN 80726 35 0 8837.3 0.261 -1 PHLCQCFG 8 44 481.20479995063744 NaN 0 480.7919921875 PEAK HCD FTMS 0 0 0 25793 13872.755859375 0.6804012641187661 1 -0.01247406005859375 3 Carbamidomethyl (C) _PHLC(Carbamidomethyl (C))QCFG_ ENST00000425916.4_1_10:77163018-77167299:+|nuORF;ENST00000484411.1_1_10:77163655-77167299:+|nuORF;ENST00000486015.1_1_10:77162714-77167299:+|nuORF 0.7936320650641473 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.72779 0 0 131.9208792465909 712.3661462047747 844.2870254513657 0 0 0 0 0 0 0 0 0 {I|L} 0.72779 + + 4 + NaN NaN 101836.6 NaN 21157 4637 25793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25798 100.82 NaN 310660 35 0 30963 0.327 + 29604 VAPIIFLTI 9 60 493.8177654279245 985.620977922649 2 493.81787109375 MULTI HCD FTMS 0 0 0 25797 204660.359375 0.9224671309897449 -2 0.0330810546875 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 53.57557251787612 0.02656881086235134 1 {I|L}T{I|L} 3 -1 38.698 0 0 3.9262 0 0 640.3940296857437 0 640.3940296857437 0 18.520599913279625 0 0 0 0.8252574989159953 0 0.4247425010840047 0 {I|L}T{I|L} 3.9262 + + 50 NaN NaN 134634.3 NaN 21158 4638 25797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25799 100.83 NaN 106000 35 0 10479 0.261 -1 CFRGCVFIL 9 36 586.2905150042775 1170.566477075355 2 586.2907104492188 MULTI HCD FTMS 0 0 0 25797 83141.578125 0.7319223208370367 -2 0.0330810546875 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FRGC(Carbamidomethyl (C))VFIL_ ENST00000431210.2_1_11:74559394-74574146:-|nuORF 7.910154910731844 0.2910521888787154 1 D{I|L}{I|L}{I|L} 4 -1 33.175 0 0 2.8341 0 0 698.2792225568375 0 698.2792225568375 0 6.977437731477423 0 0 0 0.4247425010840047 0 0 0 D{I|L}{I|L}{I|L} 2.8341 - 31 NaN NaN 101901.4 NaN 21159 4638 25797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25801 100.83 NaN 723750 35 0 244000 0.327 + 34436 YPETLVNLIVL 11 41 637.3737954248594 1272.7330379165187 2 637.3739624023438 MULTI HCD FTMS 0 0 0 25800 428528.625 0.2426343145659829 20 -0.33991241455078125 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 43.981846655682396 0.1113057155252403 1 VN{I|L}{I|L}V{I|L} 6 5 69.641 0 0 5.4718 0 0 603.2907137447602 0 603.2907137447602 0 58.672137691284405 0 0 0 2.274227503252014 0 0 0.4247425010840047 + VN{I|L}{I|L}V{I|L} 5.4718 + + 62 NaN NaN 201260.7 NaN 21160 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25802 100.84 NaN 314270 35 0 40319 0.262 + -1 ILSPMELLL 9 45 522.8038704550287 1043.5931879768573 2 522.8041381835938 MULTI HCD FTMS 0 0 0 25800 183398.265625 0.9458001037218347 3 -0.04575347900390625 2 Oxidation (M) _ILSPM(Oxidation (M))ELLL_ REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF 23.1484247019978 0.1603590852062899 1 V{I|L}{I|L}{I|L} 4 -1 45.745 0 0 4.3835 0 0 587.2618896199534 0 587.2618896199534 0 38.75569708000178 0 0 0 1.3807196863200843 0 0 0 V{I|L}{I|L}{I|L} 4.3835 - 23 NaN NaN 133139.1 NaN 21161 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25803 100.84 NaN 181320 35 0 29643 0.261 + 27394 SYTLLFAYF 9 45 562.7859323429124 1123.5573117526246 2 562.7870483398438 MULTI HCD FTMS 0 0 0 25800 44769.4140625 0.21560330933980706 -20 0.32195281982421875 3 Unmodified _SYTLLFAYF_ ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3 44.40701690623563 0.04511410083598184 1 {M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4 5 45.433 0 0 4.0437 0 0 577.3116052363778 0 577.3116052363778 0 22.13229419702941 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4.0437 + + 36 NaN NaN 109173.3 NaN 21162 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25804 100.84 NaN 73461 35 0 10444 0.261 + 14691 LGYNLFLLTF 10 35 600.836026648988 1199.6575003647758 2 600.8366088867188 MULTI HCD FTMS 0 0 0 25800 33241.9765625 0.5414379882556202 -1 0.00965118408203125 4 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 6.2057823575117 0.44245551207394906 1 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 8 -1 23.193 0 0 1.9333 0 0 165.11570134373238 0 165.11570134373238 0 19.21327198560853 0 0 0 0 0 0.3807196863200844 0 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 1.9333 - 34 + NaN NaN 107276.6 NaN 21163 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25805 100.85 NaN 315070 35 0 42725 0.261 + 19792 NYAWVYYHL 9 56 614.7932447402208 1227.5719365472414 2 615.2947998046875 MULTI HCD FTMS 0 0 0 25800 39876.53515625 0.7234375823828186 -15 0.22751617431640625 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 31.26834338654808 0.10542797264966089 1 [YN]AWV 5 4 53.812 0 0 4.3836 0 0 0 591.260176852073 591.260176852073 49.83288122256525 0 0 0 0 1.7614393726401687 1.6989700043360187 0 0 + [YN]AWV 4.3836 + + 68 + NaN NaN 133146 NaN 21164 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25806 100.85 NaN 44295 35 0 6124.2 0.261 + 4771 EYVALGSFFF 10 34 590.2894423573638 1178.5643317815275 2 590.2898559570312 MULTI HCD FTMS 0 0 0 25800 20523.876953125 0.519962047739688 -2 0.022125244140625 6 Unmodified _EYVALGSFFF_ ENSG00000118873|ENST00000358951|RAB3GAP2 22.736283301280096 0.29844449404982915 1 {I|L}GS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 40.406 0 0 3.4284 0 0 462.2086321739087 0 462.2086321739087 0 40.406075122407685 0 0 0 1.1989700043360187 0 0 0 + {I|L}GS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4284 + + 20 + NaN NaN 90987.1 NaN 21165 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25807 100.85 NaN 34302 35 0 5323.6 0.261 + 25324 SCQRLQAQPLP 11 22 620.8276591651478 NaN 0 620.828125 PEAK HCD FTMS 0 0 0 25800 5241.0498046875 0.2587063110565906 -1 0.00965118408203125 7 Unmodified _SCQRLQAQPLP_ ENST00000609439.2_2_7:45847154-45848297:+|nuORF 3.2813086475875832 0.3328120158028032 1 P 1 10 6.9897 0 0 0.56385 0 0 914.4411937191643 225.12453638248283 1139.5657301016472 0 0 0 0 0 0 0 0 0 + P 0.56385 + + 1 + NaN NaN 86884.2 NaN 21166 4639 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25810 100.87 NaN 226000 35 0 58479 0.327 + 32489 WFDPAIFTI 9 50 555.2868505775424 1108.5591482218847 2 555.287353515625 MULTI HCD FTMS 0 0 0 25809 94290.296875 0.37313259151336503 9 -0.163818359375 1 Unmodified _WFDPAIFTI_ ENSG00000163655|ENST00000496455|GMPS 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}T{I|L} 3 6 32.435 0 0 2.9259 0 0 729.3484039314801 0 729.3484039314801 0 8.010299956639813 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}T{I|L} 2.9259 + + 28 NaN NaN 115592 NaN 21167 4641 25809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25811 100.87 NaN 111890 35 0 7214.9 0.261 + 5124 FERRRELRRQK 11 48 525.3096783860749 1572.9072057584244 3 525.3093872070312 MULTI HCD FTMS 0 0 0 25809 85961.0703125 0.8095756992576976 1 -0.0125579833984375 2 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 K 1 10 1.5938 0 0 0.10133 0 0 1070.6081356221032 371.1720064752563 1441.7801420973594 0 0 0 0 0 0 0 0 0 + K 0.10133 + + 5 + NaN NaN 111858.8 NaN 21168 4641 25809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25812 100.87 NaN 90816 35 0 6852.3 0.261 -1 0 61 530.9851307269967 1589.9335627811897 3 530.985107421875 MULTI HCD FTMS 0 0 0 25809 45184.92578125 0.7522183674904018 -5 0.075927734375 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.97391 0 0 1424.8550085593133 0 1424.8550085593133 0 6.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.97391 - 18 + NaN NaN 101986.2 NaN 21169 4641 25809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25814 100.88 NaN 97274 35 0 10045 0.327 + 13504 KYPENFFLL 9 38 585.8131013046903 1169.6116496761806 2 585.8138427734375 MULTI HCD FTMS 0 0 0 25813 51552.39453125 0.7723573091555275 10 -0.18056488037109375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.188 0 0 2.41 0 0 778.3659535138687 0 778.3659535138687 0 11.989700043360184 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.41 + + 27 NaN NaN 98427.6 NaN 21170 4642 25813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25815 100.88 NaN 99527 35 0 11627 0.261 + 29498 TYVPWPLML 9 42 560.2988380180435 1118.583123102887 2 560.2991943359375 MULTI HCD FTMS 0 0 0 25813 25283.15625 0.32230937773882556 -12 0.1826629638671875 2 Unmodified _TYVPWPLML_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 20.453626601364224 0.18364154288633264 1 [YT]V[WP][{I|L}P]M{I|L} 9 0 + 30.123 0 0 2.693 2.693 87.659 0 0 0 2.6883247136530777 21.170912423450403 2.6883247136530777 30.12333735073725 0 1 0 0 0 + + [YT]V[WP][{I|L}P]M{I|L} 2.693 + + 23 NaN NaN 99002.1 NaN 21171 4642 25813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25816 100.89 NaN 184280 35 0 19797 0.261 + 316 AFSTIFSFF 9 65 533.765720408463 1065.516887883726 2 533.7653198242188 MULTI HCD FTMS 0 0 0 25813 27888.57421875 0.34089688256957745 -4 0.0554046630859375 3 Unmodified _AFSTIFSFF_ ENSG00000036565|ENST00000276373|SLC18A1;nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1 37.97399986684836 0.07464525285885698 1 Q{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 43.928 0 0 4.1227 0 0 391.2234441354822 0 391.2234441354822 0 30.11561899423569 0 0 0 1.5 0 0 0 Q{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1227 - 95 + NaN NaN 109532.6 NaN 21172 4642 25813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25817 100.89 NaN 37619 35 0 5069.5 0.261 + 17557 LYVLQVLTF 9 25 548.3258755222407 NaN 0 548.3252563476562 PEAK HCD FTMS 0 0 0 25813 14027.29296875 0.4634416337931867 19 -0.349395751953125 4 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 1.844237919475145 0.28630992268396543 1 V 1 8 6.9897 0 0 0.63854 0 0 379.20941598413134 613.3353365533811 992.5447525375125 0 0 0 0 0 0 0 0 0 + V 0.63854 + + 1 + NaN NaN 88362.9 NaN 21173 4642 25813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25818 100.89 NaN 87345 35 0 16767 0.261 + 20434 PAGGGPGQRR 10 37 476.75794080175876 951.5013286703175 2 476.75799560546875 MULTI HCD FTMS 0 0 0 25813 17894.818359375 0.5854855215114869 6 -0.10540771484375 5 Unmodified _PAGGGPGQRR_ REV__ENSG00000090924|ENST00000425673|PLEKHG2;REV__nc|ENSG00000090924|Q9H7P9-3|PLEKHG2 1.6526216038709556 0.46655611578153744 1 M 1 -1 3.0989 0 0 0.32569 0 0 494.35455240254254 323.0769442193969 817.4314966219395 0 0 0 0 0 0 0 0 0 M 0.32569 - 7 + NaN NaN 107804.9 NaN 21174 4642 25813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25819 100.9 NaN 45201 35 0 7636.7 0.261 + 33523 YIFPVWCFH 9 29 606.2889404296875 NaN 0 606.2889404296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YIFPVWCFH_ REV__RBL2|p.L207P|1|0.12|ENSG00000103479|chr16:53447089-53447089|T/C|missense_variant 5.230669730166228 0.26989974671959066 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87760.4 NaN 21175 4642 25813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25821 100.9 NaN 102790 35 0 17553 0.327 + 25395 SELFGKFLFI 10 40 600.836026648988 1199.6575003647758 2 600.81884765625 MULTI HCD FTMS 0 0 0 25820 24640.017578125 0.40133117605085605 3 -0.04872894287109375 1 Unmodified _SELFGKFLFI_ ENSG00000143315|ENST00000368090|PIGM 3.5964929083625545 0.45626689593999237 1 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 8 7 16.375 0 0 1.365 0 0 165.11171377389752 0 165.11171377389752 0 7.395775165767876 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 1.365 - 45 + NaN NaN 105548.8 NaN 21176 4643 25820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25822 100.91 NaN 43864 35 0 4005.1 0.261 + 27342 SYRMTWRF 8 36 573.7773695188731 1145.5401861045461 2 573.779296875 MULTI HCD FTMS 0 0 0 25820 16325.2841796875 0.39553763012423937 -3 0.042633056640625 2 Unmodified _SYRMTWRF_ ENST00000492094.6_2_6:9673326-9673401:-|nuORF 11.640296217721598 0.50814828952472 1 Y{M(Oxidation (M))|F} 2 6 20.969 0 0 1.8305 0 0 817.3983021466812 0 817.3983021466812 0 20.969100130080562 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.8305 - 5 NaN NaN 97522.3 NaN 21177 4643 25820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25823 100.91 NaN 18911 35 0 2401.9 0.261 + 32557 WILLIYMKK 9 18 604.3675642324067 NaN 0 604.2791137695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WILLIYMKK_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|54;REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|44;REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|71;REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|81;REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|85;REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|66;REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|29;REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|271|2|anti-sense;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|256|2|anti-sense;REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|270|2|anti-sense 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85737.2 NaN 21178 4643 25820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25825 100.92 NaN 102930 35 0 12576 0.327 + 29819 VEPSLLEIL 9 35 506.799907118804 1011.585261304408 2 506.7997741699219 MULTI HCD FTMS 0 0 0 25824 22671.05859375 0.22793871259789267 8 -0.14475250244140625 1 Unmodified _VEPSLLEIL_ ENSG00000117400|ENST00000372470|MPL 19.256988751693697 0.19398022840297344 1 {I|L}E{I|L}{I|L} 4 5 39.909 0 0 3.9452 0 0 525.2787342755875 0 525.2787342755875 0 32.91956270212445 0 0 0 1.274227503252014 0 0 0 + {I|L}E{I|L}{I|L} 3.9452 + + 19 NaN NaN 107595.5 NaN 21179 4644 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25826 100.92 NaN 154390 35 0 48209 0.261 -1 VQRCREIF 8 35 554.2894642624578 1106.5643755917156 2 554.2900390625 MULTI HCD FTMS 0 0 0 25824 61367.75390625 0.6358013394522948 -2 0.0358123779296875 2 Carbamidomethyl (C) _VQRC(Carbamidomethyl (C))REIF_ ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41973324-41980100:-|nuORF 15.847184025352803 0.47719562709667024 1 E{I|L}{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.655 0 0 699.3594633376125 0 699.3594633376125 0 34.9607625286837 0 0 0 1.4247425010840047 0 0 0 E{I|L}{M(Oxidation (M))|F} 3.655 + + 12 + NaN NaN 102650.7 NaN 21180 4644 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25827 100.92 NaN 110760 35 0 8443.2 0.261 + 6985 FPVVEFLTL 9 46 532.8050263031956 1063.5954996731912 2 532.8049926757812 MULTI HCD FTMS 0 0 0 25824 21993.693359375 0.183990663325564 -10 0.1634979248046875 3 Unmodified _FPVVEFLTL_ ENSG00000169180|ENST00000304658|XPO6;nc|ENSG00000169180|Q96QU8-2|XPO6 30.636539890814138 0.10832830463492794 1 {M(Oxidation (M))|F}{I|L}T{I|L} 4 5 40.42 0 0 3.8003 0 0 571.2989624645284 0 571.2989624645284 0 14.221675119240516 0 0 0 1 0 0.3252574989159953 0 + {M(Oxidation (M))|F}{I|L}T{I|L} 3.8003 + + 58 NaN NaN 94429.1 NaN 21181 4644 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25828 100.93 NaN 102680 35 0 10125 0.261 + 13754 KYPSPFFVF 9 44 566.2975143420886 1130.580475750977 2 566.2974853515625 MULTI HCD FTMS 0 0 0 25824 30506.890625 0.5174539647513754 33 -0.5585861206054688 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 12.240655878213236 0.2545997876781172 1 V{M(Oxidation (M))|F} 2 7 19.464 0 0 1.7216 0 0 866.4340953420542 0 866.4340953420542 0 9.006375246153906 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.7216 + + 13 NaN NaN 98883.6 NaN 21182 4644 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25829 100.93 NaN 62750 35 0 5931.6 0.261 + 35614 YYIFIPSKF 9 38 589.3193508880403 NaN 0 589.2423095703125 PEAK HCD FTMS 0 0 0 25824 5999.0947265625 0.41757711625744415 1 -0.0228729248046875 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 1 {I|L} 1 8 12.179 0 0 1.0351 0 0 326.1269697430742 734.3858736627561 1060.5128434058304 0 0 0 0 0 0.6694451763165201 0 0 0 + {I|L} 1.0351 + + 5 + NaN NaN 107372.4 NaN 21183 4644 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25830 100.93 NaN 43451 35 0 3651.4 0.261 + 30008 VFNGLSILASF 11 31 584.3240424271753 1166.6335319211505 2 584.3252563476562 MULTI HCD FTMS 0 0 0 25824 12826.1357421875 0.1701435474607267 8 -0.14475250244140625 6 Unmodified _VFNGLSILASF_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 16.565877749689598 0.3127433757948945 1 {I|L}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 7 26.198 0 0 2.2456 0 0 730.4017201154312 0 730.4017201154312 0 18.098943791441968 0 0 0 1 0 0 0 + {I|L}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.2456 + + 14 NaN NaN 105952.5 NaN 21184 4644 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25832 100.94 NaN 733510 35 0 358170 0.327 + 23105 RETLFIHMSY 10 51 432.88520627292405 NaN 0 432.88519287109375 PEAK HCD FTMS 0 0 0 25831 164857.8125 0.5682531803844748 66 -0.99432373046875 1 Unmodified _RETLFIHMSY_ REV__ENSG00000227345|ENST00000616448|PARG;REV__nc|ENSG00000227345|Q86W56-2|PARG;REV__nc|ENSG00000227345|Q86W56-3|PARG;REV__nc|ENSG00000227345|Q86W56-4|PARG;REV__nc|ENSG00000227345|Q86W56-5|PARG 0.6976657623105312 0.3395871838311286 1 T 1 -1 8.8515 0 0 1.0248 0 0 184.33485238784186 575.3515108697874 759.6863632576292 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.0248 + + 8 + NaN NaN 196863.2 NaN 21185 4645 25831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25833 100.94 NaN 215690 35 0 14792 0.261 + 21327 PSRRRPRHRVP 11 70 471.9517636089412 1412.8334614270236 3 471.95135498046875 MULTI HCD FTMS 0 0 0 25831 102302.25 0.5556940969240166 -7 0.1140899658203125 2 Unmodified _PSRRRPRHRVP_ ENST00000371933.7_1_1:47184401-47184626:-|nuORF 0.5059551277355931 0.4167017191902429 1 R 1 10 4.6041 0 0 0.32588 0 0 860.508300592677 393.21491419010005 1253.723214782777 0 0 0 0 0 0 0 0 0 + R 0.32588 + + 4 + NaN NaN 115436.6 NaN 21186 4645 25831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25834 100.95 NaN 244720 35 0 56333 0.261 -1 0 50 595.3776751086885 594.3703986420885 1 595.3778686523438 MULTI HCD FTMS 0 0 0 25831 37378.63671875 0.5207414859323141 -5 0.0784454345703125 3 NaN NaN 1 {I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 4.437 0 0 0.7465 0 0 169.138783507126 0 169.138783507126 0 -2.5257498915995313 -2.5257498915995313 0 0 0 0 0 0 {I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.7465 - 8 + NaN NaN 120756.9 NaN 21187 4645 25831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25836 100.95 NaN 138810 35 0 23746 0.412 + 4645 EYNILVNFF 9 54 579.7950985922198 1157.5756442512395 2 579.7954711914062 MULTI HCD FTMS 0 0 0 25835 88523.1640625 0.038622360187101454 41 -0.6848068237304688 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 34.93206674587334 0.08860942999206235 1 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 50.433 0 0 4.3568 0 0 519.2339955060562 0 519.2339955060562 0 50.34440644703906 0 0 0 1.6989700043360187 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.3568 + + 44 NaN NaN 125598.9 NaN 21188 4646 25835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25838 100.96 NaN 422440 35 0 142010 0.327 + 34437 YPETLVNLIVL 11 41 637.3737954248594 1272.7330379165187 2 637.3739624023438 MULTI HCD FTMS 0 0 0 25837 307209.09375 0.1739427976146705 28 -0.49160003662109375 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 33.4449034751529 0.1791669456720762 1 VN{I|L}{I|L}V{I|L} 6 5 52.268 0 0 4.1067 0 0 603.2903919904312 0 603.2903919904312 0 52.26789385964942 0 0 0 2.242992819099939 0 0 0.3807196863200844 + VN{I|L}{I|L}V{I|L} 4.1067 + + 29 NaN NaN 162749.5 NaN 21189 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25839 100.96 NaN 192830 35 0 21483 0.263 + 29605 VAPIIFLTI 9 45 493.8177654279245 985.620977922649 2 493.8179626464844 MULTI HCD FTMS 0 0 0 25837 145809.09375 0.6572063920660123 7 -0.1403656005859375 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 53.57557251787612 0.02656881086235134 1 {I|L}T{I|L} 3 -1 38.94 0 0 3.9508 0 0 640.3936634748062 0 640.3936634748062 0 19.29892479403911 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}T{I|L} 3.9508 + + 33 NaN NaN 114044 NaN 21190 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25840 100.97 NaN 266100 35 0 29835 0.261 + -1 ILSPMELLL 9 37 522.8038704550287 1043.5931879768573 2 522.803955078125 MULTI HCD FTMS 0 0 0 25837 90297.8046875 0.46567328621263493 11 -0.20532989501953125 3 Oxidation (M) _ILSPM(Oxidation (M))ELLL_ REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF 23.1484247019978 0.1603590852062899 1 V{I|L}{I|L}{I|L} 4 -1 43.8 0 0 4.197 0 0 587.262010642775 0 587.262010642775 0 43.80001899740286 0 0 0 1.1861818737241734 0 0 0 V{I|L}{I|L}{I|L} 4.197 - 24 NaN NaN 125210.2 NaN 21191 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25841 100.97 NaN 124260 35 0 17885 0.261 + 4646 EYNILVNFF 9 43 579.7950985922198 1157.5756442512395 2 579.7949829101562 MULTI HCD FTMS 0 0 0 25837 47354.69140625 0.02066069336100472 42 -0.719482421875 4 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 16.149105407346934 0.22083165093524068 1 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 20.229 0 0 1.7475 0 0 519.2294050928396 0 519.2294050928396 0 19.515449934959715 0 0 0 1.3494850021680094 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.7475 + + 18 + NaN NaN 105865.1 NaN 21192 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25842 100.97 NaN 117090 35 0 6676.8 0.261 -1 CFRGCVFIL 9 48 586.2905150042775 1170.566477075355 2 586.2908325195312 MULTI HCD FTMS 0 0 0 25837 53557.19921875 0.4714814228181217 7 -0.1403656005859375 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FRGC(Carbamidomethyl (C))VFIL_ ENST00000431210.2_1_11:74559394-74574146:-|nuORF 7.910154910731844 0.2910521888787154 1 D{I|L}{I|L}{I|L} 4 -1 27.155 0 0 2.3198 0 0 698.2785570023351 0 698.2785570023351 0 2.9541680232195233 0 0 0 0.4247425010840047 0 0 0 D{I|L}{I|L}{I|L} 2.3198 - 251 NaN NaN 106082.9 NaN 21193 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25843 100.98 NaN 234250 35 0 21892 0.261 + 29154 TYIPPLLVAF 10 57 567.3339042558348 1132.6532555784695 2 567.333984375 MULTI HCD FTMS 0 0 0 25837 41878.91015625 0.17157280120857912 -12 0.19074249267578125 6 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 49.93300154707207 0.07803319134556608 1 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 + 75.691 0 0 6.6827 6.6827 94.613 0 0 0 24.88438100576431 54.72234667441434 24.88438100576431 75.6914468044949 0 2.3807196863200843 2 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 6.6827 + + 109 NaN NaN 126308.1 NaN 21194 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25844 100.98 NaN 37922 35 0 2500.4 0.261 + 23297 RHSGVSYQEI 10 35 588.2914428710938 NaN 0 588.2914428710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RHSGVSYQEI_ REV__ENSG00000146414|ENST00000275233|SHPRH;REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF;REV__nc|ENSG00000146414|Q149N8-4|SHPRH 2.498486711656943 0.3380459306859131 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95433.9 NaN 21195 4647 25837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25846 100.98 NaN 187130 35 0 13727 0.327 -1 VLVSDMILI 9 48 522.8038704550287 1043.5931879768573 2 523.8203735351562 MULTI HCD FTMS 0 0 0 25845 12736.6015625 0.26486973408559433 12 -0.20487213134765625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VLVSDMILI_ ENST00000489450.1_1_1:76254988-76255843:+|nuORF 8.593279151180031 0.2858735984551981 1 CV{I|L}[KP] 5 -1 14.437 0 0 1.3834 0 0 485.2443104474625 0 485.2443104474625 0 1.9897000433601857 0 0 0 0 0 0 0 CV{I|L}[KP] 1.3834 - 40 NaN NaN 107576.5 NaN 21196 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25847 100.99 NaN 234480 35 0 42121 0.261 + 27395 SYTLLFAYF 9 45 562.7859323429124 1123.5573117526246 2 562.7869873046875 MULTI HCD FTMS 0 0 0 25845 95538.3828125 0.46009964469474884 -11 0.17328643798828125 2 Unmodified _SYTLLFAYF_ ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3 60.38955033654506 0.017036522530421875 1 {I|L}{M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 5 4 51.454 0 0 4.5795 0 0 464.2263355939469 0 464.2263355939469 0 25.76728783671072 0 0 0 2 0 0 0 + {I|L}{M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4.5795 + + 58 NaN NaN 119419.4 NaN 21197 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25848 100.99 NaN 90956 35 0 12251 0.263 + 26438 STKKSCCS 8 39 422.188467799417 842.3623826656341 2 422.18853759765625 MULTI HCD FTMS 0 0 0 25845 42271.578125 0.20417108440481643 -11 0.17328643798828125 3 Unmodified _STKKSCCS_ ENST00000377087.3_1_22:31059270-31059315:-|nuORF 0 0.5419923896992614 1 {I|L} 1 8 10.797 0 0 1.2817 0 0 155.0946284088713 571.1659639947874 726.2605924036586 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 1.2817 - 2 + NaN NaN 104522.7 NaN 21198 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25849 101 NaN 161810 35 0 30368 0.261 + 4647 EYNILVNFF 9 46 579.7950985922198 1157.5756442512395 2 579.7952880859375 MULTI HCD FTMS 0 0 0 25845 41202.5703125 0.017976543519391312 43 -0.7155609130859375 4 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 34.93206674587334 0.08860942999206235 1 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 51.568 0 0 4.4548 0 0 519.2323475568375 0 519.2323475568375 0 51.56804392152253 0 0 0 1.75 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4548 + + 30 NaN NaN 112252.4 NaN 21199 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25850 101 NaN 183720 35 0 15257 0.261 + 19793 NYAWVYYHL 9 54 614.7932447402208 1227.5719365472414 2 615.2950439453125 MULTI HCD FTMS 0 0 0 25845 14267.5419921875 0.25884084574874894 -6 0.10540771484375 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.04802738721622131 1 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 67.871 0 0 5.5289 5.5289 88.383 0 0 0 9.136890462689138 60.42342188037523 9.136890462689138 10.969100130080562 0 2.1549471895720984 1.6989700043360187 0 0 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN][{I|L}V]{[CT]|[{M(Oxidation (M))|F}G]}CR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN][{I|L}V][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.5289;4.6353;2.7464;1.9041 +;-;-;- + 121 NaN NaN 119904.3 NaN 21200 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25851 101 NaN 117700 35 0 21065 0.261 + 14692 LGYNLFLLTF 10 40 600.836026648988 1199.6575003647758 2 600.8367919921875 MULTI HCD FTMS 0 0 0 25845 26692.9375 0.4347686833079844 8 -0.1501007080078125 6 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 3.2813086475875832 0.45793521633868084 1 T{I|L}{I|L} 3 -1 11.682 0 0 0.97381 0 0 165.1127664453689 704.3042715317349 869.4170379771037 0 0 0 0 0 0 0 0 0 T{I|L}{I|L} 0.97381 - 14 + NaN NaN 104103.4 NaN 21201 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25852 101.01 NaN 64046 35 0 15994 0.262 + 4450 EYHVLMLD 8 35 510.24642363847727 NaN 0 509.7850646972656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EYHVLMLD_ REV__ENSG00000106080|ENST00000222803|FKBP14;REV__ENST00000479939.1_1_7:30062251-30066124:-|nuORF 2.302733041254933 0.38822285293237185 1 W 1 -1 3.4949 0 0 0.34314 0 0 527.3106745701202 302.0758150690063 829.3864896391265 0 0 0 0 0 0 0 0 0 W 0.34314 - 2 + NaN NaN 89583.8 NaN 21202 4648 25845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25854 101.01 NaN 128980 35 0 6855.7 0.327 + 5125 FERRRELRRQK 11 56 525.3096783860749 1572.9072057584244 3 525.3097534179688 MULTI HCD FTMS 0 0 0 25853 68228.484375 0.6425713726734668 9 -0.15300750732421875 1 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 K 1 10 3.4949 0 0 0.22219 0 0 1158.6617065058488 283.11887537174067 1441.7805818775894 0 0 0 0 0 0 0 0 0 + K 0.22219 + + 8 + NaN NaN 103227.3 NaN 21203 4649 25853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25855 101.02 NaN 175250 35 0 32175 0.261 -1 0 39 479.2851092535891 478.2778327869891 1 479.284912109375 MULTI HCD FTMS 0 0 0 25853 64443.3359375 0.8329160883752186 3 -0.04888916015625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 113907.3 NaN 21204 4649 25853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25856 101.02 NaN 90728 35 0 8591.1 0.261 + 689 APVYPQIIN 9 38 507.78531474390223 1013.5560765546045 2 507.78546142578125 MULTI HCD FTMS 0 0 0 25853 20311.1953125 0.25608681112532267 -5 0.09586334228515625 3 Unmodified _APVYPQIIN_ ENSG00000140836|ENST00000268489|ZFHX3 10.073929032068715 0.27331982688540024 1 APV 3 6 26.198 0 0 2.5847 0 0 0 743.3744888036829 743.3744888036829 8.239087409443187 0 0 0 0 0 0 0 0 + APV 2.5847 + + 8 + NaN NaN 96316.4 NaN 21205 4649 25853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25857 101.02 NaN 59527 35 0 8702.9 0.261 -1 QLYSFFKII 9 32 600.836026648988 1199.6575003647758 2 600.8352661132812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QLYSFFKII_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|105 1.6526216038709556 0.33848895094777925 1 T 1 -1 6.9897 0 0 0.58264 0 0 165.11375144075083 930.473964102807 1095.5877155435578 0 0 0 0 0 0 0 0 0 T 0.58264 - 3 + NaN NaN 95454.4 NaN 21206 4649 25853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25858 101.03 NaN 45371 35 0 6162.3 0.261 + 1892 CYRLRKVF 8 41 542.808837890625 NaN 0 542.808837890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _CYRLRKVF_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-4|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 5.230669730166228 0.38822285293237185 1 E 1 -1 2.2185 0 0 0.20492 0 0 559.6305572248062 390.91489587955317 950.5454531043595 0 0 0 0 0 0 0 0 0 E 0.20492 - 1 + NaN NaN 98984 NaN 21207 4649 25853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25860 101.03 NaN 85470 35 0 7929.2 0.327 + 13505 KYPENFFLL 9 38 585.8131013046903 1169.6116496761806 2 585.81396484375 MULTI HCD FTMS 0 0 0 25859 50135.59765625 0.7511308766698039 18 -0.30914306640625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.0949 0 0 778.3676624982437 0 778.3676624982437 0 21.249387366083 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0949 + + 17 NaN NaN 98276.7 NaN 21208 4650 25859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25861 101.04 NaN 212890 35 0 28307 0.261 -1 VFIPMVVLW 9 58 560.3171756028123 NaN 0 560.2990112304688 PEAK HCD FTMS 0 0 0 25859 4695.021484375 0.23762863163588688 -7 0.128387451171875 2 Oxidation (M) _VFIPM(Oxidation (M))VVLW_ ENSG00000130733|ENST00000586748|YIPF2 9.347437153973935 0.2499504662953367 1 MT 2 -1 9.464 0 0 0.84604 0 0 131.13256790308702 752.3809849508847 883.5135528539718 0 0 0 0 0 0 0 0 0 MT 0.84604 - 80 + NaN NaN 116301.8 NaN 21209 4650 25859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25862 101.04 NaN 69069 35 0 17982 0.262 -1 MCTLRPMRML 10 29 452.88030795006875 NaN 0 452.8807067871094 PEAK HCD FTMS 0 0 0 25859 21930.66015625 0.832874288735541 1 -0.016326904296875 3 Carbamidomethyl (C),3 Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TLRPM(Oxidation (M))RM(Oxidation (M))L_ ENST00000505068.5_1_4:71690058-71691144:-|nuORF 0.6268255596534771 0.33964781322640114 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97932.4 NaN 21210 4650 25859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25863 101.04 NaN 76064 35 0 15156 0.261 + 14693 LGYNLFLLTF 10 22 600.836026648988 1199.6575003647758 2 600.8180541992188 MULTI HCD FTMS 0 0 0 25859 12006.7333984375 0.19556302750376098 9 -0.1428985595703125 4 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 3.2813086475875832 0.45793521633868084 1 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 8 -1 22.396 0 0 1.8668 0 0 165.1186359028041 0 165.1186359028041 0 22.395775165767873 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 1.8668 - 22 + NaN NaN 93924.2 NaN 21211 4650 25859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25865 101.05 NaN 101230 35 0 23227 0.327 + 739 ARMKRGELF 9 37 554.3088118439206 NaN 0 554.2897338867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _ARMKRGELF_ nc|ENSG00000164776|Q16816-2|PHKG1 8.593279151180031 0.2536050107310812 1 E{I|L} 2 7 12.391 0 0 1.1197 0 0 699.396205375538 162.0560244195922 861.4522297951302 0 0 0 0 0 0 0 0.3807196863200844 0 + E{I|L} 1.1197 + + 4 + NaN NaN 107129.6 NaN 21212 4651 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25866 101.05 NaN 54286 35 0 7526.8 0.261 + 1610 AYVPLQFLF 9 28 549.3051387060967 1096.5957244789934 2 549.3052978515625 MULTI HCD FTMS 0 0 0 25864 24477.748046875 0.9981896145041746 -4 0.08823394775390625 2 Unmodified _AYVPLQFLF_ ENST00000340022.6_2_7:91874335-91874845:-|nuORF;ENST00000394507.5_2_7:91874335-91874458:-|nuORF 16.942295170755138 0.21397866736869717 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92936.8 NaN 21213 4651 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25867 101.06 NaN 30074 35 0 6051.1 0.261 + -1 YNIKHFFMK 9 14 622.3175048828125 NaN 0 622.3175048828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.2427956001690155 1 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4305799787124 274.0831698053344 1126.513749784047 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 2 + NaN NaN 87992.9 NaN 21214 4651 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25869 101.06 NaN 137450 35 0 14005 0.327 + 6986 FPVVEFLTL 9 40 532.8050263031956 1063.5954996731912 2 532.8049926757812 MULTI HCD FTMS 0 0 0 25868 54631.09375 0.45702242970387635 -2 0.02930450439453125 1 Unmodified _FPVVEFLTL_ ENSG00000169180|ENST00000304658|XPO6;nc|ENSG00000169180|Q96QU8-2|XPO6 52.268347100219714 0.028397529699942435 1 {M(Oxidation (M))|F}{I|L}T{I|L} 4 5 46.983 0 0 4.4173 0 0 571.3007614400835 0 571.3007614400835 0 20.784634594678266 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + {M(Oxidation (M))|F}{I|L}T{I|L} 4.4173 + + 36 NaN NaN 117543 NaN 21215 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25870 101.06 NaN 83228 35 0 12969 0.261 + 30416 VLPDMFFSF 9 27 551.7674542059203 1101.5203554786406 2 551.7686767578125 MULTI HCD FTMS 0 0 0 25868 26529.216796875 0.5959442935408534 -2 0.02930450439453125 2 Unmodified _VLPDMFFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 10.073929032068715 0.27331982688540024 1 K{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 6 20.991 0 0 1.9056 0 0 574.2407667108656 0 574.2407667108656 0 20.99092415709281 0 0 0 1 0 0 0 K{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.9056 - 17 + NaN NaN 91757.1 NaN 21216 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25871 101.07 NaN 35173 35 0 6259.1 0.261 + 1777 CLSLQQDGPVS 11 34 573.7773695188731 1145.5401861045461 2 573.7781372070312 MULTI HCD FTMS 0 0 0 25868 14650.896484375 0.3549696783738417 6 -0.10411834716796875 3 Unmodified _CLSLQQDGPVS_ REV__ENST00000475086.5_1_9:4661905-4666534:-|nuORF 2.282774691075616 0.408909192180357 1 M{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 7.4473 0 0 0.65011 0 0 737.3773670880875 0 737.3773670880875 0 7.447274948966937 0 0 0 0 0 0 0 M{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.65011 - 1 NaN NaN 88821.7 NaN 21217 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25872 101.07 NaN 86275 35 0 11624 0.261 + 35536 YYGPLNLLTF 10 36 600.8193764356309 1199.6241999380618 2 601.3213500976562 MULTI HCD FTMS 0 0 0 25868 15810.357421875 0.23903242883598938 13 -0.23094940185546875 4 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 20.41453444215458 0.3201613495159799 1 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 39.909 0 0 3.3268 0 0 707.3258345578639 0 707.3258345578639 0 34.42471268044436 0 0 0 1.4247425010840047 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.3268 + + 17 NaN NaN 103462.4 NaN 21218 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25873 101.07 NaN 69481 35 0 9903.1 0.261 + 10528 IPFFPDLQI 9 26 545.3028630357952 1088.5911731383903 2 545.8038330078125 MULTI HCD FTMS 0 0 0 25868 17258.041015625 0.16476140045783522 -7 0.12187957763671875 5 Unmodified _IPFFPDLQI_ ENSG00000175745|ENST00000327111|NR2F1;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2 3.944395688203298 0.32111559684428237 1 {I|L}Q{I|L} 3 6 26.198 0 0 2.4066 0 0 716.3691273419937 0 716.3691273419937 0 10.713337517843655 0 0 0 0 0 0 0 + {I|L}Q{I|L} 2.4066 + + 9 NaN NaN 99183.5 NaN 21219 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25874 101.08 NaN 44381 35 0 5407.3 0.261 + -1 MGRLSSGLVEL 11 36 589.3185485511201 NaN 0 589.2421875 PEAK HCD FTMS 0 0 0 25868 10314.3388671875 0.6571701970200903 3 -0.05202484130859375 6 Oxidation (M) _M(Oxidation (M))GRLSSGLVEL_ REV__tr|U7SWZ5|U7SWZ5_FUSNUMATEeffluxfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01226PE=4SV=1 2.735195868890462 0.3343611804837492 1 {I|L} 1 -1 3.9794 0 0 0.33821 0 0 360.1729114559526 700.3444307916624 1060.517342247615 0 0 0 0 0 0 0 0 0 {I|L} 0.33821 + + 1 + NaN NaN 90431.2 NaN 21220 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25875 101.08 NaN 44792 35 0 6729.3 0.261 + 32591 WKRRPGWK 8 28 557.3257654174084 1112.6369779016168 2 557.3273315429688 MULTI HCD FTMS 0 0 0 25868 20096.017578125 0.6728266385220409 -6 0.1089630126953125 7 Unmodified _WKRRPGWK_ ENST00000286201.2_1_2:202901244-202901346:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82419.5 NaN 21221 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25876 101.08 NaN 46699 35 0 6115.9 0.261 + -1 QLPRMQLAVC 10 33 616.3168334960938 NaN 0 616.3168334960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),Oxidation (M) _QLPRM(Oxidation (M))QLAVC(Carbamidomethyl (C))_ REV__ENST00000295148.8_1_2:24253742-24253799:-|nuORF 3.944395688203298 0.33680843299986807 1 A 1 -1 6.9897 0 0 0.56939 0 0 879.4277797777976 274.08234583072505 1153.5101256085227 0 0 0 0 0 0 0 0 0 A 0.56939 + + 9 + NaN NaN 88397.2 NaN 21222 4652 25868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25878 101.09 NaN 270890 35 0 11397 0.326 + 23763 RRKHGKRPNKH 11 74 471.9517636089412 1412.8334614270236 3 471.9518127441406 MULTI HCD FTMS 0 0 0 25877 131655.28125 0.7151363984613845 1 -0.0096435546875 1 Unmodified _RRKHGKRPNKH_ ENSG00000101825|ENST00000217939|MXRA5 1.1097533296519684 0.4140536653900533 1 P 1 10 6.2371 0 0 0.44146 0 0 1192.7025848174517 120.05044733218983 1312.7530321496415 0 0 0 0 0 0.4247425010840047 0 0 0 + P 0.44146 + + 10 + NaN NaN 133594.7 NaN 21223 4653 25877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25879 101.09 NaN 78984 35 0 15948 0.261 + 18949 NAHDSSFK 8 35 453.20947888614324 NaN 0 453.20977783203125 PEAK HCD FTMS 0 0 0 25877 30331.54296875 0.6124054601104287 -90 1.5947723388671875 2 Unmodified _NAHDSSFK_ ENST00000382361.7_1_7:5646078-5646261:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97824.7 NaN 21224 4653 25877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25881 101.1 NaN 429360 35 0 46971 0.327 + 29155 TYIPPLLVAF 10 46 567.3339042558348 1132.6532555784695 2 567.3339233398438 MULTI HCD FTMS 0 0 0 25880 198525.296875 0.8133339948084869 -5 0.088043212890625 1 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 49.93300154707207 0.07803319134556608 1 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 + 78.918 0 0 6.9676 6.9676 95.174 0 0 0 25.764837301042718 60.959471728614574 25.764837301042718 78.91827190205532 0 2.305462187404089 2 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 6.9676 + + 96 NaN NaN 149044 NaN 21225 4654 25880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25882 101.1 NaN 207030 35 0 65692 0.261 + 34438 YPETLVNLIVL 11 34 637.3737954248594 1272.7330379165187 2 637.3742065429688 MULTI HCD FTMS 0 0 0 25880 214493.875 0.12144713632426915 35 -0.5791168212890625 2 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 17.44264345198275 0.3051040874848456 1 {I|L}V{I|L} 3 8 31.198 0 0 2.4513 0 0 929.4843006818375 0 929.4843006818375 0 19.54242509439325 0 0 0 0.5 0 0 0 + {I|L}V{I|L} 2.4513 + + 15 NaN NaN 116953.9 NaN 21226 4654 25880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25883 101.11 NaN 147560 35 0 13410 0.263 + 29606 VAPIIFLTI 9 41 493.8178677002027 985.6211824672055 2 493.818115234375 MULTI HCD FTMS 0 0 0 25880 179112.21875 0.7030558370678174 -15 0.265472412109375 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 28.486842064014134 0.11819662193267319 1 {I|L}T{I|L} 3 -1 34.693 0 0 3.5199 0 0 640.39653212715 0 640.39653212715 0 25.74031267727719 0 0 0 0.8494850021680094 0 0 0 {I|L}T{I|L} 3.5199 + + 24 NaN NaN 106907.1 NaN 21227 4654 25880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25885 101.11 NaN 583580 35 0 145660 0.327 -1 0 49 497.2956538058204 496.2883773392204 1 497.2957763671875 MULTI HCD FTMS 0 0 0 25884 308692.5625 0.6464524979403581 1 -0.022918701171875 1 NaN NaN 1 HV 2 -1 11.454 0 0 2.3079 0 0 0 257.12909876041255 257.12909876041255 7.016675202793719 0 0 0 0 0 0 0 0 HV 2.3079 - 16 + NaN NaN 182646.5 NaN 21228 4655 25884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25886 101.12 NaN 230870 35 0 21004 0.261 + 20197 NYLDWLTSI 9 50 562.7859323429124 1123.5573117526246 2 562.7860107421875 MULTI HCD FTMS 0 0 0 25884 118690.828125 0.5715986207973893 -4 0.06500244140625 2 Unmodified _NYLDWLTSI_ ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-2|LONP1;nc|ENSG00000196365|P36776-3|LONP1 32.037481411007896 0.10189719824197178 1 EA[YE]{I|L}TS{I|L} 8 5 54.373 0 0 4.8394 0 0 199.09279067207189 0 199.09279067207189 0 41.92593794827836 0 0 0 2.274227503252014 0 0 0 EA[YE]{I|L}TS{I|L} 4.8394 - 237 NaN NaN 117618.6 NaN 21229 4655 25884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25887 101.12 NaN 276630 35 0 91516 0.261 + 28465 TPLVFTLVI 9 36 501.81533803195805 1001.6161231307161 2 501.8151550292969 MULTI HCD FTMS 0 0 0 25884 101699.7578125 0.053027191979943995 -25 0.415252685546875 3 Unmodified _TPLVFTLVI_ REV__ENSG00000136271|ENST00000258772|DDX56;REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF;REV__ENST00000421223.5_1_7:44605603-44609680:-|nuORF;REV__ENST00000446987.5_1_7:44605603-44612175:-|nuORF;REV__nc|ENSG00000136271|Q9NY93-2|DDX56 21.74664581756881 0.17247014374749275 1 M[{I|L}T]V{I|L} 5 -1 34.521 0 0 3.4465 0 0 426.2834645001969 0 426.2834645001969 0 34.5205343810445 0 0 0 1 0 0.3807196863200844 0 M[{I|L}T]V{I|L} 3.4465 - 10 NaN NaN 117094 NaN 21230 4655 25884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25888 101.12 NaN 103540 35 0 7274.3 0.261 + 5011 FCPSWSIFW 9 46 586.7662521028471 1171.5179512724942 2 586.7666015625 MULTI HCD FTMS 0 0 0 25884 51609.0703125 0.8375057471096785 1 -0.022918701171875 4 Unmodified _FCPSWSIFW_ REV__ENSG00000128383|ENST00000249116|APOBEC3A;REV__ENSG00000179750|ENST00000333467|APOBEC3B;REV__nc|ENSG00000128383|P31941-2|APOBEC3A;REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B 30.224811164608877 0.11021837014094292 1 C(Carbamidomethyl (C))RTSA{I|L}{M(Oxidation (M))|F}W 8 -1 74.774 0 0 6.3827 0 0 132.0295002000317 0 132.0295002000317 0 64.31662866796145 0 0 0 2.805462187404089 0 0 0 C(Carbamidomethyl (C))RTSA{I|L}{M(Oxidation (M))|F}W 6.3827 - 216 + NaN NaN 105613.7 NaN 21231 4655 25884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25889 101.13 NaN 81144 35 0 10404 0.261 + 3183 ECILFPFSF 9 31 551.7674542059203 1101.5203554786406 2 551.7670288085938 MULTI HCD FTMS 0 0 0 25884 14758.5126953125 0.331530760567261 1 -0.022918701171875 5 Unmodified _ECILFPFSF_ REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF 10.823927491677226 0.26684000660059787 1 K{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 -1 25.049 0 0 2.2741 0 0 574.2381421991469 0 574.2381421991469 0 21.554556341805764 0 0 0 1 0 0.4247425010840047 0 K{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.2741 - 15 + NaN NaN 98688 NaN 21232 4655 25884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25890 101.13 NaN 50183 35 0 7630.1 0.261 + 2328 DMYGPEKFTD 10 24 601.7563108975002 1201.4980688618002 2 602.76171875 MULTI HCD FTMS 0 0 0 25884 15601.7509765625 0.9353704639383796 3 -0.052093505859375 6 Unmodified _DMYGPEKFTD_ ENSG00000066654|ENST00000396083|THUMPD1;ENST00000569768.1_1_16:20750201-20753061:-|nuORF 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]} 3 7 10.458 0 0 0.87038 0 0 820.3585072248062 0 820.3585072248062 0 2.385606273598313 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]} 0.87038 + + 10 NaN NaN 94985.2 NaN 21233 4655 25884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25892 101.14 NaN 277910 35 0 61854 0.327 -1 SRKKPYECTQ 10 45 432.88520627292405 NaN 0 432.8852233886719 PEAK HCD FTMS 0 0 0 25891 148181.9375 0.5107726226799744 77 -1.1211166381835938 1 Carbamidomethyl (C) _SRKKPYEC(Carbamidomethyl (C))TQ_ ENSG00000198429|ENST00000429654|ZNF69 0.6268255596534771 0.33964781322640114 1 T 1 -1 0.088644 0 0 0.010263 0 0 595.6462842726075 164.03890405826408 759.6851883308716 0 0 0 0 0 0 0 0 0 T 0.010263 + + 1 + NaN NaN 126642.2 NaN 21234 4656 25891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25893 101.14 NaN 154210 35 0 50619 0.261 + 26439 STKKSCCS 8 30 422.188467799417 842.3623826656341 2 422.1888122558594 MULTI HCD FTMS 0 0 0 25891 80697.53125 0.3897678580956471 -3 0.04543304443359375 2 Unmodified _STKKSCCS_ ENST00000377087.3_1_22:31059270-31059315:-|nuORF 0 0.5419923896992614 1 {I|L} 1 8 15.485 0 0 1.8382 0 0 155.0942825201027 571.1616304986936 726.2559130187963 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.8382 - 2 + NaN NaN 100758 NaN 21235 4656 25891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25894 101.14 NaN 67507 35 0 18555 0.261 + 850 AWINSSNN 8 29 453.20947888614324 NaN 0 453.2091064453125 PEAK HCD FTMS 0 0 0 25891 38926.13671875 0.7859335969860807 -87 1.5232467651367188 3 Unmodified _AWINSSNN_ REV__ENSG00000075340|ENST00000264436|ADD2;REV__nc|ENSG00000075340|P35612-2|ADD2;REV__nc|ENSG00000075340|P35612-3|ADD2;REV__nc|ENSG00000075340|P35612-4|ADD2;REV__nc|ENSG00000075340|P35612-5|ADD2;REV__nc|ENSG00000075340|P35612-6|ADD2;REV__nc|ENSG00000075340|P35612-8|ADD2;REV__nc|ENSG00000075340|P35612-9|ADD2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93908.1 NaN 21236 4656 25891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25895 101.15 NaN 39553 35 0 6608.4 0.261 + 29897 VFDLVELEVL 10 29 588.33153906068 1174.64852518816 2 588.330322265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VFDLVELEVL_ ENSG00000136802|ENST00000372600|LRRC8A 12.240655878213236 0.39661705172222156 1 {I|L}EV{I|L} 4 6 36.938 0 0 3.1446 0 0 702.3607044904312 0 702.3607044904312 0 29.948500216800937 0 0 0 0.5 0 0 0 + {I|L}EV{I|L} 3.1446 + + 13 NaN NaN 91807.4 NaN 21237 4656 25891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25896 101.15 NaN 44464 35 0 7607.7 0.261 -1 0 30 631.3989212996614 630.3916448330614 1 632.40185546875 MULTI HCD FTMS 0 0 0 25891 11506.4111328125 0.38767854007697133 -24 0.40886688232421875 5 NaN NaN 1 AM 2 -1 12.563 0 0 1.9929 0 0 0 425.28928552799067 425.28928552799067 12.562893943202624 0 0 0 0 0 0 0 0 AM 1.9929 - 1 + NaN NaN 103947.3 NaN 21238 4656 25891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25898 101.15 NaN 127460 35 0 8192.4 0.326 + 5126 FERRRELRRQK 11 55 525.3096783860749 1572.9072057584244 3 525.6442260742188 MULTI HCD FTMS 0 0 0 25897 38166.1484375 0.43812159868963513 15 -0.2634124755859375 1 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 {M(Oxidation (M))|F}{I|L} 2 9 5.0886 0 0 0.32352 0 0 918.5277634750247 391.24924646549067 1309.7770099405154 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.32352 - 5 + NaN NaN 101894.2 NaN 21239 4657 25897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25899 101.16 NaN 26884 35 0 3290.5 0.261 -1 0 28 626.3797278553309 1250.7449027774617 2 626.3790893554688 MULTI HCD FTMS 0 0 0 25897 16674.080078125 0.0799963601597047 -12 0.2163848876953125 2 NaN NaN 1 V 1 -1 6.9897 0 0 0.55884 0 0 166.2431525685691 982.4115084283811 1148.6546609969503 0 0 0 0 0 0 0 0 0 V 0.55884 - 1 + NaN NaN 96468.5 NaN 21240 4657 25897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25901 101.16 NaN 55473 35 0 4486.8 0.327 -1 MKFFLLLFT 9 30 601.336996604165 NaN 0 601.3197021484375 PEAK HCD FTMS 0 0 0 25900 5555.5615234375 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKFFLLLFT_ ENSG00000240038|ENST00000684275|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;nc|ENSG00000240038|P19961-2|AMY2B;nc|ENSG00000243480|P04746-2|AMY2A 3.944395688203298 0.27613285122220627 1 {I|L}{I|L} 2 -1 9.464 0 0 0.78823 0 0 708.3650504819644 263.1035250299438 971.4685755119083 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.78823 + + 5 + NaN NaN 104543.4 NaN 21241 4658 25900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25902 101.17 NaN 57230 35 0 9472.5 0.261 -1 0 34 539.9851202760475 1616.9335314283423 3 540.3197631835938 MULTI HCD FTMS 0 0 0 25900 14959.927734375 0.23444288417513295 -28 0.46734619140625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100102.3 NaN 21242 4658 25900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25904 101.17 NaN 96546 35 0 8466.2 0.327 + 13506 KYPENFFLL 9 40 585.8131013046903 1169.6116496761806 2 585.8130493164062 MULTI HCD FTMS 0 0 0 25903 59954.4375 0.8982366084152182 27 -0.44614410400390625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4347747844463 0 925.4347747844463 0 18.521825181113627 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 51 NaN NaN 98326.9 NaN 21243 4659 25903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25905 101.18 NaN 166240 35 0 28208 0.261 -1 0 46 595.3000734521801 594.29279698558 1 595.2998046875 MULTI HCD FTMS 0 0 0 25903 43870.02734375 0.4693993189427521 27 -0.44614410400390625 2 NaN NaN 1 {I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 2.6761 0 0 0.45029 0 0 169.0620058252269 0 169.0620058252269 0 0.4845500650402812 0 0 0 0 0 0 0 {I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.45029 - 9 + NaN NaN 127223.5 NaN 21244 4659 25903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25906 101.18 NaN 61052 35 0 7290 0.261 + 8813 HKALQFEIK 9 36 557.3257654174084 1112.6369779016168 2 557.3258056640625 MULTI HCD FTMS 0 0 0 25903 25422.09765625 0.8511469719678482 1 -0.01612091064453125 3 Unmodified _HKALQFEIK_ REV__ENST00000422642.6_2_10:30987145-31001569:+|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93535.9 NaN 21245 4659 25903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25907 101.18 NaN 34599 35 0 4022.5 0.261 -1 0 30 626.3797278553309 1250.7449027774617 2 626.8816528320312 MULTI HCD FTMS 0 0 0 25903 14200.2255859375 0.11397222867722959 -10 0.16248321533203125 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92524.4 NaN 21246 4659 25903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25909 101.19 NaN 70047 35 0 6105.6 0.327 + 6987 FPVVEFLTL 9 35 532.8050263031956 1063.5954996731912 2 532.8052368164062 MULTI HCD FTMS 0 0 0 25908 39124.203125 0.32729782885621783 6 -0.114166259765625 1 Unmodified _FPVVEFLTL_ ENSG00000169180|ENST00000304658|XPO6;nc|ENSG00000169180|Q96QU8-2|XPO6 10.073929032068715 0.27331982688540024 1 T{I|L} 2 7 25.217 0 0 2.3709 0 0 831.45121962715 0 831.45121962715 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 + T{I|L} 2.3709 + + 4 NaN NaN 97594.7 NaN 21247 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25910 101.2 NaN 114750 35 0 21189 0.261 + 10809 ISYCPCLVLF 10 41 579.2928195129807 NaN 0 579.29248046875 PEAK HCD FTMS 0 0 0 25908 30988.287109375 0.49539488297710976 6 -0.114166259765625 2 Unmodified _ISYCPCLVLF_ ENSG00000163449|ENST00000437356|TMEM169 6.2057823575117 0.3348729994311477 1 {M(Oxidation (M))|F}V 2 9 9.464 0 0 0.81828 0 0 278.1723566999863 629.2923067682249 907.4646634682113 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 0.81828 - 10 + NaN NaN 100215.4 NaN 21248 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25911 101.2 NaN 195100 35 0 20316 0.261 + 8440 GYVSLFPLL 9 51 504.7919657055849 1007.5693784779698 2 504.79229736328125 MULTI HCD FTMS 0 0 0 25908 12353.861328125 0.23552351036013794 1 -0.03911590576171875 3 Unmodified _GYVSLFPLL_ ENSG00000115275|ENST00000448666|MOGS;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS 10.823927491677226 0.26684000660059787 1 {M(Oxidation (M))|F}[{I|L}P]{I|L} 4 5 17.435 0 0 1.7304 0 0 519.2681751935562 0 519.2681751935562 0 10.445312593723983 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}[{I|L}P]{I|L} 1.7304 + + 3 NaN NaN 129432.5 NaN 21249 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25912 101.2 NaN 87681 35 0 8554.6 0.261 + 702 APYHLTTVL 9 34 507.78531474390223 1013.5560765546045 2 507.7857360839844 MULTI HCD FTMS 0 0 0 25908 25689.408203125 0.3238961826331454 6 -0.114166259765625 4 Unmodified _APYHLTTVL_ REV__ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;REV__ENSG00000143322|ENST00000502732|ABL2;REV__ENST00000504324.1_1_1:179086401-179112191:-|nuORF;REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF;REV__nc|ENSG00000143322|P42684-10|ABL2;REV__nc|ENSG00000143322|P42684-2|ABL2;REV__nc|ENSG00000143322|P42684-3|ABL2;REV__nc|ENSG00000143322|P42684-4|ABL2;REV__nc|ENSG00000143322|P42684-5|ABL2;REV__nc|ENSG00000143322|P42684-6|ABL2;REV__nc|ENSG00000143322|P42684-7|ABL2;REV__nc|ENSG00000143322|P42684-8|ABL2 10.823927491677226 0.26684000660059787 1 V{I|L} 2 -1 23.711 0 0 2.3394 0 0 783.3931751935562 0 783.3931751935562 0 -2.4865124202832334 -2.4865124202832334 0 0 0.4247425010840047 0 0 0 V{I|L} 2.3394 + + 18 NaN NaN 101667.1 NaN 21250 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25913 101.21 NaN 114830 35 0 15750 0.261 + 29985 VFIPMVVLW 9 41 560.3171756028123 NaN 0 560.2992553710938 PEAK HCD FTMS 0 0 0 25908 9904.9736328125 0.5013193951482202 1 -0.03911590576171875 5 Oxidation (M) _VFIPM(Oxidation (M))VVLW_ ENSG00000130733|ENST00000586748|YIPF2 45.7499826716795 0.05983490592224375 1 MP{I|L} 3 7 16.682 0 0 1.4913 0 0 131.1315197127828 643.2892949588024 774.4208146715853 0 0 0 0 0 0.3494850021680094 0 0 0 MP{I|L} 1.4913 - 63 + NaN NaN 101276 NaN 21251 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25914 101.21 NaN 48359 35 0 5035.4 0.261 + 29898 VFDLVELEVL 10 33 588.33153906068 1174.64852518816 2 588.8330688476562 MULTI HCD FTMS 0 0 0 25908 20017.59765625 0.8391732468980547 1 -0.03911590576171875 6 Unmodified _VFDLVELEVL_ ENSG00000136802|ENST00000372600|LRRC8A 16.149105407346934 0.3600587335443843 1 KE{I|L}EV{I|L} 6 5 50.266 0 0 4.2792 0 0 445.23204238105626 0 445.23204238105626 0 50.26593150440647 0 0 0 1 0 0 0.2614393726401688 KE{I|L}EV{I|L} 4.2792 - 23 NaN NaN 89124.5 NaN 21252 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25915 101.21 NaN 40184 35 0 3860.8 0.261 + 10874 IVWHFFHV 8 24 542.789556929193 1083.564560925186 2 542.308349609375 MULTI HCD FTMS 0 0 0 25908 4740.35888671875 0.10283201114132484 -16 0.27446746826171875 7 Unmodified _IVWHFFHV_ ENSG00000257315|ENST00000550078|ZBED6 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96226.2 NaN 21253 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25916 101.22 NaN 140780 35 0 22010 0.261 -1 AFLERLCF 8 46 528.2710007593818 1054.5274485855634 2 528.2708740234375 MULTI HCD FTMS 0 0 0 25908 22999.765625 0.0981580507426279 -20 0.33003997802734375 8 Carbamidomethyl (C) _AFLERLC(Carbamidomethyl (C))F_ ENSG00000138688|ENST00000679879|BLTP1;ENST00000482114.1_1_4:123130334-123145991:+|nuORF;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4684 0 0 889.4486349642729 0 889.4486349642729 0 13.266062568876718 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4684 + + 2 + NaN NaN 118724.7 NaN 21254 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25917 101.22 NaN 66336 35 0 13531 0.261 -1 CYRRWLEL 8 36 598.3050394193281 1194.595525905456 2 598.3063354492188 MULTI HCD FTMS 0 0 0 25908 9199.5771484375 0.1486525283736955 -9 0.14269256591796875 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRRWLEL_ ENST00000452276.5_1_8:94768078-94770751:+|nuORF;ENST00000518319.5_1_8:94768050-94770751:+|nuORF 15.847184025352803 0.47719562709667024 1 E{I|L} 2 -1 25.217 0 0 2.1109 0 0 934.4567580548112 0 934.4567580548112 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 E{I|L} 2.1109 + + 7 NaN NaN 107789.9 NaN 21255 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25918 101.22 NaN 51238 35 0 5184 0.261 + 17558 LYVLQVLTF 9 37 548.3267822265625 NaN 0 548.3267822265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 6.2057823575117 0.2651744870083793 1 QV 2 7 11.198 0 0 1.023 0 0 488.30068144355624 376.1876314752563 864.4883129188125 0 0 0 0 0 0.5 0 0 0 + QV 1.023 + + 4 + NaN NaN 92175 NaN 21256 4660 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25920 101.23 NaN 132160 35 0 18728 0.327 + 5307 FFIPPINLE 9 39 545.3028630357952 1088.5911731383903 2 545.8048095703125 MULTI HCD FTMS 0 0 0 25919 57748.234375 0.5513186555170396 2 -0.04253387451171875 1 Unmodified _FFIPPINLE_ nc|ENSG00000053108|Q6MZW2-3|FSTL4 16.942295170755138 0.21397866736869717 1 {I|L}{I|L}Q{I|L} 4 6 27.423 0 0 2.5191 0 0 603.2906971662125 0 603.2906971662125 0 6.620768972555595 0 0 0 0 0 0 0 {I|L}{I|L}Q{I|L} 2.5191 - 42 NaN NaN 108573.2 NaN 21257 4661 25919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25921 101.23 NaN 63316 35 0 8993.3 0.261 + 35222 YVLVDLLF 8 32 491.2862014909186 NaN 0 491.2862548828125 PEAK HCD FTMS 0 0 0 25919 12231.3310546875 0.4021619594065967 -2 0.05523681640625 2 Unmodified _YVLVDLLF_ REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|69 13.50788311687929 0.38822285293237185 1 {I|L}{I|L} 2 -1 20.217 0 0 2.0617 0 0 165.07753256154257 586.2891329400999 751.3666655016425 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L} 2.0617 + + 7 + NaN NaN 92735 NaN 21258 4661 25919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25922 101.24 NaN 55438 35 0 15831 0.261 + 22618 QVERLNIRIK 10 33 634.8931992459982 1267.7718455587963 2 634.892578125 MULTI HCD FTMS 0 0 0 25919 34630.75 0.2320588896150577 -15 0.27779388427734375 3 Unmodified _QVERLNIRIK_ REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant;REV__ENSG00000188596|ENST00000524981|CFAP54;REV__nc|ENSG00000188596|Q96N23-2|CFAP54 0.6268255596534771 0.47198581731947004 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90027.4 NaN 21259 4661 25919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25924 101.24 NaN 759940 35 0 245990 0.327 + 6633 FPLSITLVL 9 46 501.81533803195805 1001.6161231307161 2 501.81536865234375 MULTI HCD FTMS 0 0 0 25923 476595.6875 0.24850138841500394 -18 0.3265533447265625 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 74.42276476219924 0.007657080072768255 1 {I|L}MT{I|L}V{I|L} 6 4 60.75 0 0 6.0652 0 0 313.199510642775 0 313.199510642775 0 50.26593150440647 0 0 0 1.5 0 0.8494850021680094 0 {I|L}MT{I|L}V{I|L} 6.0652 - 91 NaN NaN 199331.5 NaN 21260 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25925 101.25 NaN 255110 35 0 72984 0.261 + 5505 FLACLTLVL 9 39 496.7944948364074 NaN 0 496.79449462890625 PEAK HCD FTMS 0 0 0 25923 190871.4375 0.4545766519626088 8 -0.1272125244140625 2 Unmodified _FLACLTLVL_ REV__ENSG00000163217|ENST00000295379|BMP10 21.74664581756881 0.17567436591797916 1 V{I|L}{M(Oxidation (M))|F} 3 -1 21.682 0 0 2.1867 0 0 131.0950250755231 498.23496423892817 629.3299893144513 0 0 0 0 0 1 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.1867 - 19 + NaN NaN 126010.6 NaN 21261 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25926 101.25 NaN 246920 35 0 25845 0.261 + 29156 TYIPPLLVAF 10 43 567.3339042558348 1132.6532555784695 2 567.333984375 MULTI HCD FTMS 0 0 0 25923 126374.4375 0.5177406996059956 3 -0.0491485595703125 3 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 41.8396318013385 0.12944265636084 1 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 + 73.478 0 0 6.4872 6.4872 94.207 0 0 0 25.764837301042718 50.290456128171996 25.764837301042718 73.47804375441612 0 1.7614393726401687 2 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 6.4872 + + 105 NaN NaN 133005.5 NaN 21262 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25927 101.25 NaN 345320 35 0 41327 0.262 + 29607 VAPIIFLTI 9 44 493.8178677002027 985.6211824672055 2 493.8180847167969 MULTI HCD FTMS 0 0 0 25923 134137.546875 0.5265201110151884 -7 0.1297760009765625 4 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.07383188072201104 1 {I|L}T{I|L} 3 -1 38.698 0 0 3.9262 0 0 640.3969196304888 0 640.3969196304888 0 14.810450018512924 0 0 0 0.8252574989159953 0 0.4247425010840047 0 {I|L}T{I|L} 3.9262 + + 66 NaN NaN 148125.5 NaN 21263 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25928 101.26 NaN 130170 35 0 12203 0.261 + 20198 NYLDWLTSI 9 42 562.7859323429124 1123.5573117526246 2 562.7852783203125 MULTI HCD FTMS 0 0 0 25923 67423.6484375 0.32470297043858504 3 -0.0491485595703125 5 Unmodified _NYLDWLTSI_ ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-2|LONP1;nc|ENSG00000196365|P36776-3|LONP1 17.44264345198275 0.2096557692338702 1 TS{I|L} 3 6 36.198 0 0 3.2217 0 0 804.3805892327341 0 804.3805892327341 0 15.268024924119672 0 0 0 1 0 0 0 + TS{I|L} 3.2217 + + 53 NaN NaN 102526.7 NaN 21264 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25929 101.26 NaN 121870 35 0 16829 0.262 + 21328 PSRRRPRHRVP 11 58 471.9517636089412 1412.8334614270236 3 471.95166015625 MULTI HCD FTMS 0 0 0 25923 57764.515625 0.3137702283624028 10 -0.176116943359375 6 Unmodified _PSRRRPRHRVP_ ENST00000371933.7_1_1:47184401-47184626:-|nuORF 0.5059551277355931 0.4167017191902429 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 106039.6 NaN 21265 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25930 101.26 NaN 86578 35 0 20213 0.261 + 34439 YPETLVNLIVL 11 33 637.3737954248594 1272.7330379165187 2 637.875732421875 MULTI HCD FTMS 0 0 0 25923 46871.63671875 0.03862705016190531 43 -0.620361328125 7 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 4.5288652416199255 0.3990586020344083 1 V{I|L} 2 9 25.969 0 0 2.0404 0 0 1042.570912065775 0 1042.570912065775 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{I|L} 2.0404 + + 2 NaN NaN 99130.2 NaN 21266 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25931 101.27 NaN 54424 35 0 7622.6 0.261 + 32592 WKRRPGWK 8 28 557.3257654174084 1112.6369779016168 2 557.8274536132812 MULTI HCD FTMS 0 0 0 25923 5014.40283203125 0.2288233146148031 4 -0.06208038330078125 8 Unmodified _WKRRPGWK_ ENST00000286201.2_1_2:202901244-202901346:+|nuORF 0.6903765706972694 0.5409681170271811 1 C 1 8 5.4846 0 0 0.49293 0 0 470.3580887907754 536.2397554986936 1006.5978442894691 0 0 0 0 0 0 0 0 0 C 0.49293 - 1 + NaN NaN 91950 NaN 21267 4662 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25933 101.27 NaN 168900 35 0 19674 0.327 + 6597 FPLPAARRP 9 48 512.8063995913996 1023.5982462495991 2 512.8065185546875 MULTI HCD FTMS 0 0 0 25932 135156.640625 0.24993313946668064 -17 0.3203277587890625 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 28.486842064014134 0.11819662193267319 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 -1 35.062 0 0 3.4253 0 0 0 663.3706210877427 663.3706210877427 17.102868501927873 0 0 0 0 1 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3.4253 + + 23 NaN NaN 108606.9 NaN 21268 4663 25932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25935 101.28 NaN 90997 35 0 5093.7 0.327 + 5127 FERRRELRRQK 11 53 525.3096783860749 1572.9072057584244 3 525.3094482421875 MULTI HCD FTMS 0 0 0 25934 30403.724609375 0.2863402761411869 24 -0.3869476318359375 1 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96915.8 NaN 21269 4664 25934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25936 101.28 NaN 30360 35 0 3073.8 0.261 -1 YQYFRCLP 8 25 573.7763810358932 NaN 0 573.776611328125 PEAK HCD FTMS 0 0 0 25934 5899.12841796875 0.24270306684497092 4 -0.0613861083984375 2 Carbamidomethyl (C) _YQYFRC(Carbamidomethyl (C))LP_ ENSG00000039537|ENST00000337836|C6 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92848.4 NaN 21270 4664 25934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25937 101.29 NaN 48459 35 0 6358.4 0.261 + 32593 WKRRPGWK 8 29 557.3257654174084 1112.6369779016168 2 557.29638671875 MULTI HCD FTMS 0 0 0 25934 16198.857421875 0.5423473951835024 5 -0.08095550537109375 3 Unmodified _WKRRPGWK_ ENST00000286201.2_1_2:202901244-202901346:+|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98650.8 NaN 21271 4664 25934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25939 101.29 NaN 294540 35 0 35190 0.327 -1 0 61 417.9219242023519 1250.7439432072556 3 417.92205810546875 MULTI HCD FTMS 0 0 0 25938 124086.1796875 0.3674146136859051 -6 0.1173553466796875 1 NaN NaN 1 P 1 -1 3.9794 0 0 0.31816 0 0 1030.6129445273712 120.05026422672108 1150.6632087540922 0 0 0 0 0 0 0 0 0 P 0.31816 - 12 + NaN NaN 133074.2 NaN 21272 4665 25938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25940 101.3 NaN 282800 35 0 24722 0.261 -1 0 79 423.59752611203294 1267.7707489362988 3 423.59765625 MULTI HCD FTMS 0 0 0 25938 79720.4921875 0.5386407146472234 -11 0.19179534912109375 2 NaN NaN 1 P 1 -1 8.4949 0 0 0.67006 0 0 1047.6397044800472 120.05052362613515 1167.6902281061823 0 0 0 0 0 0.5 0 0 0 P 0.67006 - 25 + NaN NaN 122130.6 NaN 21273 4665 25938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25941 101.3 NaN 42925 35 0 4387.7 0.261 + 35537 YYGPLNLLTF 10 30 600.8193764356309 1199.6241999380618 2 600.8195190429688 MULTI HCD FTMS 0 0 0 25938 11263.3291015625 0.18058203671673015 24 -0.38732147216796875 3 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 15.248480904072842 0.3684828712757339 1 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 43.175 0 0 3.5991 0 0 707.3295155255875 0 707.3295155255875 0 43.17532531436136 0 0 0 1.4247425010840047 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.5991 + + 12 NaN NaN 105365.3 NaN 21274 4665 25938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25943 101.3 NaN 167590 35 0 13050 0.327 + 19794 NYAWVYYHL 9 45 614.7932447402208 1227.5719365472414 2 615.2948608398438 MULTI HCD FTMS 0 0 0 25942 23041.86328125 0.418024028428415 12 -0.1791229248046875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 38.175570920033316 0.07371992880350783 1 [YN]AWV 5 4 54.437 0 0 4.4345 0 0 0 591.2552584283811 591.2552584283811 50.45757490560675 0 0 0 0 1.7614393726401687 1.6989700043360187 0 0 + [YN]AWV 4.4345 + + 99 + NaN NaN 107949.5 NaN 21275 4666 25942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25944 101.31 NaN 63304 35 0 5566 0.261 -1 0 39 539.9851202760475 1616.9335314283423 3 540.3189697265625 MULTI HCD FTMS 0 0 0 25942 28092.52734375 0.44024899392421374 -20 0.35284423828125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94102.8 NaN 21276 4666 25942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25945 101.31 NaN 93975 35 0 9267.5 0.261 + -1 YKFMQNVLL 9 37 586.3153489176133 NaN 0 586.3157348632812 PEAK HCD FTMS 0 0 0 25942 24829.203125 0.5855223989900269 -11 0.19185638427734375 3 Oxidation (M) _YKFM(Oxidation (M))QNVLL_ REV__FSTL5|p.D181N|1|0.14|ENSG00000168843|chr4:161775943-161775943|C/T|missense_variant 4.3292370932331545 0.2742679634796037 1 {I|L}{M(Oxidation (M))|F}W 3 -1 13.812 0 0 1.1799 0 0 132.09573435283193 589.2684420221311 721.3641763749631 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}W 1.1799 - 46 + NaN NaN 100117.5 NaN 21277 4666 25942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25946 101.32 NaN 78079 35 0 13532 0.261 + 7010 FPYGLFELV 9 29 542.789556929193 1083.564560925186 2 542.789306640625 MULTI HCD FTMS 0 0 0 25942 17549.18359375 0.3806922399672573 -10 0.16893768310546875 4 Unmodified _FPYGLFELV_ ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}V 2 7 25.969 0 0 2.3966 0 0 853.4004339264669 0 853.4004339264669 0 11.365006360318688 0 0 0 0.5 0 0 0 + {I|L}V 2.3966 + + 4 NaN NaN 103532.8 NaN 21278 4666 25942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25948 101.32 NaN 94979 35 0 8235.9 0.327 -1 0 45 626.3797278553309 1250.7449027774617 2 626.3795776367188 MULTI HCD FTMS 0 0 0 25947 136163.921875 0.6532665120974558 -2 0.0292205810546875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 105124.2 NaN 21279 4667 25947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25949 101.32 NaN 42361 35 0 7752.1 0.261 + 20279 NYLVWRMVY 9 29 622.3170590416462 NaN 0 622.31787109375 PEAK HCD FTMS 0 0 0 25947 11931.7705078125 0.5985854274205188 5 -0.097747802734375 2 Unmodified _NYLVWRMVY_ ENSG00000102174|ENST00000379374|PHEX 14.838274106304384 0.2220448417561729 1 {I|L} 1 8 16.99 0 0 1.3672 0 0 852.4299422026298 274.08417688541255 1126.5141190880424 0 0 0 0 0 1 0 0 0 + {I|L} 1.3672 + + 6 + NaN NaN 104246.1 NaN 21280 4667 25947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25950 101.33 NaN 41864 35 0 6488 0.261 + -1 KGMLKRYVV 9 22 555.3294427095283 NaN 0 555.7886962890625 PEAK HCD FTMS 0 0 0 25947 9525.3515625 0.741432857939696 4 -0.07486724853515625 3 Oxidation (M) _KGM(Oxidation (M))LKRYVV_ REV__ENSG00000114062|ENST00000648336|UBE3A;REV__nc|ENSG00000114062|Q05086-2|UBE3A;REV__nc|ENSG00000114062|Q05086|UBE3A 0.6014990680409731 0.29233206172879045 1 A 1 -1 2.7642 0 0 0.24933 0 0 826.3823828782378 208.19935022525627 1034.5817331034941 0 0 0 0 0 0 0 0 0 A 0.24933 - 1 + NaN NaN 89446.5 NaN 21281 4667 25947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25951 101.33 NaN 30826 35 0 4141.6 0.261 -1 FMWLVQPCL 9 27 605.2948608398438 NaN 0 605.2948608398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))WLVQPC(Carbamidomethyl (C))L_ ENSG00000158486|ENST00000698260|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF;nc|ENSG00000158486|Q8TD57|DNAH3 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92923.9 NaN 21282 4667 25947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25952 101.33 NaN 38845 35 0 3608.2 0.261 + 12261 KLLWKKYPLP 10 36 643.4063394567853 NaN 0 643.40625 PEAK HCD FTMS 0 0 0 25947 16948.3984375 0.5532916837599436 -12 0.2081451416015625 5 Unmodified _KLLWKKYPLP_ ENSG00000184792|ENST00000332585|OSBP2;ENST00000496575.1_1_22:31289665-31289989:+|nuORF;nc|ENSG00000184792|Q969R2-2|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2 1.6526216038709556 0.33876987398426067 1 A 1 10 5.4846 0 0 0.42688 0 0 342.23454063056425 868.5170382135374 1210.7515788441017 0 0 0 0 0 0 0 0 0 A 0.42688 - 1 + NaN NaN 89850.8 NaN 21283 4667 25947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25954 101.34 NaN 135140 35 0 13523 0.327 -1 0 50 595.3000734521801 594.29279698558 1 595.2996826171875 MULTI HCD FTMS 0 0 0 25953 33726.84375 0.3608695604926276 36 -0.512847900390625 1 NaN NaN 1 [Y{I|L}]E 3 -1 3.5565 0 0 0.59845 0 0 0 186.08073578856752 186.08073578856752 0.255762612236905 0 0 0 0 0 0 0 0 [Y{I|L}]E 0.59845 - 9 NaN NaN 104825.1 NaN 21284 4668 25953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25955 101.34 NaN 65609 35 0 6988.3 0.261 + 26284 SRHHRILF 8 41 533.3070236853051 NaN 0 533.3067016601562 PEAK HCD FTMS 0 0 0 25953 4372.7802734375 0.17754686642792467 1 -0.01956939697265625 2 Unmodified _SRHHRILF_ ENST00000520572.1_1_8:143787902-143788028:-|nuORF 2.8892196856762586 0.38822285293237185 1 C 1 8 5.4846 0 0 0.51517 0 0 130.14530832539396 828.4309176080686 958.5762259334626 0 0 0 0 0 0 0 0 0 C 0.51517 - 3 + NaN NaN 102643.2 NaN 21285 4668 25953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25956 101.35 NaN 63295 35 0 5901.9 0.261 -1 VFIPMVVLW 9 40 560.3171756028123 NaN 0 560.299560546875 PEAK HCD FTMS 0 0 0 25953 5382.79345703125 0.27243876259774247 8 -0.12677764892578125 3 Oxidation (M) _VFIPM(Oxidation (M))VVLW_ ENSG00000130733|ENST00000586748|YIPF2 28.173230860318316 0.13253774575595106 1 {I|L}V 2 -1 15.445 0 0 1.3807 0 0 204.08917190699327 699.3541964166624 903.4433683236557 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}V 1.3807 - 12 + NaN NaN 103705.3 NaN 21286 4668 25953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25957 101.35 NaN 16674 35 0 5688.4 0.261 -1 IMERIYKCQ 9 14 620.8122983629643 NaN 0 620.8271484375 PEAK HCD FTMS 0 0 0 25953 12001.822265625 0.8886888774782596 -1 0.0196685791015625 4 Carbamidomethyl (C) _IMERIYKC(Carbamidomethyl (C))Q_ ENST00000504123.5_2_4:78636405-78636474:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88522.2 NaN 21287 4668 25953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25958 101.35 NaN 35159 35 0 4617.1 0.261 + 35615 YYIFIPSKF 9 29 589.3200287885245 NaN 0 589.3186645507812 PEAK HCD FTMS 0 0 0 25953 13077.734375 0.8886491717704249 3 -0.05519866943359375 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 9.38312468134398 0.24977752951804 1 {I|L} 1 8 11.237 0 0 0.95503 0 0 326.1283865791989 734.3893526666624 1060.5177392458613 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.95503 + + 1 + NaN NaN 87094.7 NaN 21288 4668 25953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25960 101.36 NaN 291960 35 0 34068 0.327 -1 YVRTAWML 8 52 528.2710007593818 1054.5274485855634 2 528.2713623046875 MULTI HCD FTMS 0 0 0 25959 146608.21875 0.6256923313908244 -11 0.19528961181640625 1 Oxidation (M) _YVRTAWM(Oxidation (M))L_ ENST00000273610.3_1_3:48599595-48600222:-|nuORF 5.230669730166228 0.5342319408533849 1 [YV]AV 4 -1 30.802 0 0 2.9209 0 0 0 619.2683598006603 619.2683598006603 15.31743128760553 0 0 0 0 0 2 0 0 [YV]AV 2.9209 - 67 NaN NaN 147924.1 NaN 21289 4669 25959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25961 101.36 NaN 75989 35 0 13576 0.261 -1 CYRRWLEL 8 33 598.3050394193281 1194.595525905456 2 598.3049926757812 MULTI HCD FTMS 0 0 0 25959 61886.44921875 1 0 0 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRRWLEL_ ENST00000452276.5_1_8:94768078-94770751:+|nuORF;ENST00000518319.5_1_8:94768050-94770751:+|nuORF 7.289230182591677 0.5311777711368266 1 {I|L}E{I|L} 3 -1 26.198 0 0 2.193 0 0 821.3757191388687 0 821.3757191388687 0 5.228787452803374 0 0 0 0 0 0 0 {I|L}E{I|L} 2.193 + + 10 NaN NaN 99046.2 NaN 21290 4669 25959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25963 101.37 NaN 831480 35 0 277020 0.327 + 6634 FPLSITLVL 9 45 501.81533803195805 1001.6161231307161 2 501.81549072265625 MULTI HCD FTMS 0 0 0 25962 835159.5 0.43545986827247674 -10 0.17929840087890625 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 74.42276476219924 0.007657080072768255 1 S{I|L}T{I|L}V{I|L} 6 3 67.612 0 0 6.7503 0 0 357.205370017775 0 357.205370017775 0 57.400815514432644 0 0 0 1.8494850021680094 0 1.274227503252014 0 + S{I|L}T{I|L}V{I|L} 6.7503 + + 105 NaN NaN 224034.3 NaN 21291 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25964 101.37 NaN 1039700 35 0 229880 0.261 + 31432 VYAVPILIF 9 55 517.8178897359913 1033.6212265387826 2 517.8179321289062 MULTI HCD FTMS 0 0 0 25962 542853.8125 0.8744221048360873 -6 0.0905609130859375 2 Unmodified _VYAVPILIF_ ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 109.15424536547461 0.003080475237576971 1 [YV]AVP{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 82.846 0 0 8.0151 8.0151 95.854 0 0 0 5.032059605518313 5.032059605518313 5.032059605518313 39.14442544444192 0 2.805462187404089 1.3979400086720375 0 0 + + [YV]AVP{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{I|L}[YV]VAP{M(Oxidation (M))|F};{I|L}{I|L}{I|L}[YV][PG]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{I|L}[YV][PA]V{M(Oxidation (M))|F};{I|L}{I|L}{I|L}P{[VA]|[{I|L}G]}YV{M(Oxidation (M))|F} 8.0151;4.228;2.6281;1.6828;1.5074 +;-;-;-;- + 169 NaN NaN 243899.2 NaN 21292 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25965 101.38 NaN 141400 35 0 25469 0.261 + 4902 FAIPFAITI 9 43 496.7944948364074 NaN 0 496.7945251464844 PEAK HCD FTMS 0 0 0 25962 63975.74609375 0.15236371060550546 16 -0.25072479248046875 3 Unmodified _FAIPFAITI_ ENSG00000170425|ENST00000304222|ADORA2B 21.74664581756881 0.17567436591797916 1 T{I|L} 2 7 14.949 0 0 1.5076 0 0 131.09455131906515 643.3217226827122 774.4162740017773 0 0 0 0 0 0.8494850021680094 0 0 0 + T{I|L} 1.5076 + + 8 + NaN NaN 102006.5 NaN 21293 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25966 101.38 NaN 140360 35 0 14053 0.261 + 633 APIAIMLWKIL 11 63 634.8931992459982 1267.7718455587963 2 634.8930053710938 MULTI HCD FTMS 0 0 0 25962 110897.4296875 0.743118020673684 -6 0.0905609130859375 4 Unmodified _APIAIMLWKIL_ REV__ENSG00000173208|ENST00000308666|ABCD2 2.6312355333042263 0.4073809613003177 1 S 1 -1 7.7423 0 0 0.6107 0 0 308.18599307041876 869.5142305963499 1177.7002236667686 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.6107 - 7 + NaN NaN 105898 NaN 21294 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25967 101.38 NaN 196980 35 0 18226 0.261 + 29157 TYIPPLLVAF 10 53 567.3339042558348 1132.6532555784695 2 567.3339233398438 MULTI HCD FTMS 0 0 0 25962 58122.93359375 0.23812258948318518 11 -0.17594146728515625 5 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 52.268347100219714 0.06954005568441465 1 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 [YT]{I|L} + + 49.001 7.4473 1.9744 4.3262 4.3262 60.522 0 0 0 0 35.02197890818877 0 0 0 2.3807196863200843 0 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 4.3262 + + 78 + NaN NaN 122479.8 NaN 21295 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25968 101.39 NaN 249790 35 0 58190 0.261 + 19795 NYAWVYYHL 9 50 614.7932447402208 1227.5719365472414 2 614.7927856445312 MULTI HCD FTMS 0 0 0 25962 56908.45703125 0.8020660989586098 29 -0.431182861328125 6 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.02929079705179888 1 [YN]AWVYYH{I|L} 9 0 + 71.958 0 0 5.8618 5.8618 93.099 0 0 0 9.462048448926588 9.462048448926588 9.462048448926588 71.9580558980028 0 2.339136830878453 1.6989700043360187 0 0.3494850021680094 + + [YN]AWVYYH{I|L} 5.8618 + + 142 NaN NaN 122227.8 NaN 21296 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25969 101.39 NaN 64791 35 0 21417 0.261 + -1 KHCRQCRL 8 24 579.2928195129807 NaN 0 579.2929077148438 PEAK HCD FTMS 0 0 0 25962 26438.783203125 0.42266414612528896 16 -0.25072479248046875 7 2 Carbamidomethyl (C) _KHC(Carbamidomethyl (C))RQC(Carbamidomethyl (C))RL_ REV__ENSG00000146215|ENST00000372569|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5-2|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5-4|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5|CRIP3 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97919.7 NaN 21297 4670 25962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25971 101.4 NaN 204180 35 0 22897 0.327 + 29608 VAPIIFLTI 9 50 493.8178677002027 985.6211824672055 2 493.8179931640625 MULTI HCD FTMS 0 0 0 25970 120522.4375 0.4730777373724884 2 -0.02996826171875 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 53.57557251787612 0.02656881086235134 1 {I|L}T{I|L} 3 -1 38.94 0 0 3.9508 0 0 640.3960438459 0 640.3960438459 0 23.490217871458867 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}T{I|L} 3.9508 + + 31 NaN NaN 121126.4 NaN 21298 4671 25970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25972 101.4 NaN 356420 35 0 45556 0.261 + 30819 VPVRRWPF 8 66 528.809006101803 1055.603459270406 2 528.808837890625 MULTI HCD FTMS 0 0 0 25970 104057.6328125 0.9119729019088924 -5 0.091156005859375 2 Unmodified _VPVRRWPF_ ENST00000454741.5_1_22:28395954-28396164:+|nuORF 13.50788311687929 0.4944073034352369 1 VYAV 4 7 59.196 0 0 5.6078 0 0 0 620.3432532136222 620.3432532136222 34.27440017027358 0 0 0 0 1.4247425010840047 2 0 0 VYAV 5.6078 - 72 + NaN NaN 146693.9 NaN 21299 4671 25970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25973 101.4 NaN 128860 35 0 51589 0.261 + 26392 SSSPKALHSSS 11 26 544.2736506221715 1086.532748311143 2 544.2737426757812 MULTI HCD FTMS 0 0 0 25970 54580.53515625 0.9850369400740198 -5 0.091156005859375 3 Unmodified _SSSPKALHSSS_ REV__ENSG00000152193|ENST00000282003|OBI1 2.0860074813731053 0.4097721463192591 1 N 1 -1 0.71334 0 0 0.065653 0 0 577.9313516820399 391.54282556705317 969.4741772490931 0 0 0 0 0 0 0 0 0 N 0.065653 - 1 + NaN NaN 101166.9 NaN 21300 4671 25970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25974 101.41 NaN 91685 35 0 19462 0.261 + 34440 YPETLVNLIVL 11 22 637.3737954248594 1272.7330379165187 2 637.8756713867188 MULTI HCD FTMS 0 0 0 25970 11527.2646484375 0.009499651835853955 52 -0.727874755859375 4 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 9.5439744041441 0.373925449867384 1 {I|L}V{I|L} 3 8 31.198 0 0 2.4513 0 0 929.4825916974625 0 929.4825916974625 0 31.197887582883936 0 0 0 0.5 0 0 0 + {I|L}V{I|L} 2.4513 + + 6 NaN NaN 96803.1 NaN 21301 4671 25970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25975 101.41 NaN 44265 35 0 7247.2 0.261 -1 CIFMIEIGK 9 27 555.7881469726562 NaN 0 555.7881469726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))IFMIEIGK_ ENST00000531381.1_1_11:121960972-121961020:-|nuORF 1.6526216038709556 0.28723846860855273 1 {I|L}C 2 -1 7.9588 0 0 0.71729 0 0 164.09217792793112 726.3271280624641 890.4193059903953 0 0 0 0 0 0 0 0 0 {I|L}C 0.71729 - 3 + NaN NaN 87897.4 NaN 21302 4671 25970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25976 101.41 NaN 43124 35 0 5274.5 0.261 -1 RLPSVDLKE 9 34 549.8130493164062 NaN 0 549.8130493164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RLPSVDLKE_ ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416436-113416796:+|nuORF;SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;SLC20A1|p.T342N|1|0.17|ENSG00000144136|chr2:112659071-112659071|C/A|missense_variant 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91625.2 NaN 21303 4671 25970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25978 101.42 NaN 256620 35 0 33580 0.327 + 6598 FPLPAARRP 9 53 512.8063995913996 1023.5982462495991 2 512.8065795898438 MULTI HCD FTMS 0 0 0 25977 146077.5625 0.2701282277543679 -8 0.13946533203125 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 21.74664581756881 0.17247014374749275 1 T{I|L}S{I|L}PE 6 -1 52.652 0 0 5.1438 0 0 365.22874648261876 0 365.22874648261876 0 29.463950151760656 0 0 0 0.8494850021680094 0 0 0 T{I|L}S{I|L}PE 5.1438 - 45 NaN NaN 137667.1 NaN 21304 4672 25977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25980 101.42 NaN 454360 35 0 53953 0.327 -1 0 72 417.9219242023519 1250.7439432072556 3 417.9219665527344 MULTI HCD FTMS 0 0 0 25979 175202.0625 0.5187668624541907 2 -0.02538299560546875 1 NaN NaN 1 GG 2 -1 10.445 0 0 0.83513 0 0 678.4025258261994 455.2493246747413 1133.6518505009408 0 0 0 0 0 0.9247425010840047 0 0 0 GG 0.83513 - 21 + NaN NaN 153933.1 NaN 21305 4673 25979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25981 101.43 NaN 293690 35 0 29168 0.261 + 744 ARRVNVRKRN 10 77 423.59752611203294 1267.7707489362988 3 423.5976257324219 MULTI HCD FTMS 0 0 0 25979 104346.6796875 0.7050303952683421 -3 0.05599212646484375 2 Unmodified _ARRVNVRKRN_ ENSG00000159086|ENST00000331923|PAXBP1;ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1 1.7422754331352037 0.46608156381052757 1 A 1 9 10.485 0 0 0.82701 0 0 149.10431402963587 1044.61619729433 1193.7205113239659 0 0 0 0 0 0.5 0 0 0 + A 0.82701 + + 12 + NaN NaN 130532.9 NaN 21306 4673 25979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25982 101.43 NaN 79508 35 0 11937 0.261 + 13507 KYPENFFLL 9 28 585.8131013046903 1169.6116496761806 2 585.8132934570312 MULTI HCD FTMS 0 0 0 25979 21105.640625 0.31620443530023024 41 -0.5443038940429688 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.005 0 0 2.5654 0 0 778.3685780255875 0 778.3685780255875 0 10.541134294324124 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.5654 + + 27 NaN NaN 117369.3 NaN 21307 4673 25979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25984 101.44 NaN 116370 35 0 5183.7 0.327 -1 0 53 539.9851202760475 1616.9335314283423 3 539.9849853515625 MULTI HCD FTMS 0 0 0 25983 36020.96875 0.46442119593984854 -3 0.04239654541015625 1 NaN NaN 1 Q 1 -1 2.4743 0 0 0.15302 0 0 982.7906614105674 503.07200037174067 1485.8626617823081 0 0 0 0 0 0 0 0 0 Q 0.15302 - 2 + NaN NaN 110874.4 NaN 21308 4674 25983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25985 101.44 NaN 65962 35 0 20102 0.262 + -1 MWPRVDHQKC 10 25 452.880643565624 NaN 0 452.870361328125 PEAK HCD FTMS 0 0 0 25983 17863.6171875 0.766957161812088 1 -0.0129547119140625 2 Carbamidomethyl (C) _MWPRVDHQKC(Carbamidomethyl (C))_ REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__nc|ENSG00000157106|Q96Q15-3|SMG1;REV__nc|ENSG00000157106|Q96Q15-4|SMG1;REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;REV__SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87351.5 NaN 21309 4674 25983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25986 101.45 NaN 110010 35 0 9815.4 0.261 + 13755 KYPSPFFVF 9 43 566.2977416691025 1130.580930405005 2 566.2971801757812 MULTI HCD FTMS 0 0 0 25983 27653.94921875 0.5507190242811838 7 -0.10752105712890625 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 1 V{M(Oxidation (M))|F} 2 7 27.959 0 0 2.473 0 0 866.4332177398059 0 866.4332177398059 0 6.9897000433601875 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.473 + + 19 NaN NaN 102139.5 NaN 21310 4674 25983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25988 101.45 NaN 95609 35 0 5714.9 0.327 -1 0 50 626.3797278553309 1250.7449027774617 2 626.3796997070312 MULTI HCD FTMS 0 0 0 25987 139240.28125 0.6680258002494927 6 -0.09456634521484375 1 NaN NaN 1 PP 2 -1 10.93 0 0 0.87387 0 0 572.3395205526555 481.26340662174067 1053.6029271743962 0 0 0 0 0 0.7742275032520141 0 0 0 PP 0.87387 - 21 + NaN NaN 95697.3 NaN 21311 4675 25987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25989 101.45 NaN 127160 35 0 32512 0.261 + 34441 YPETLVNLIVL 11 32 637.3737954248594 1272.7330379165187 2 637.3734130859375 MULTI HCD FTMS 0 0 0 25987 43024.2890625 0.024360493739171804 56 -0.7732467651367188 2 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 7.101721422024254 0.3877749288398915 1 V{I|L} 2 9 25.969 0 0 2.0404 0 0 1042.566831435826 0 1042.566831435826 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{I|L} 2.0404 + + 3 NaN NaN 105552.7 NaN 21312 4675 25987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25990 101.46 NaN 38933 35 0 5358.5 0.261 + 28165 TKIGSLFSRN 10 22 561.8165893554688 NaN 0 561.8165893554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TKIGSLFSRN_ REV__ENSG00000133454|ENST00000335473|MYO18B;REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B;REV__nc|ENSG00000133454|Q8IUG5-3|MYO18B 2.498486711656943 0.3380459306859131 1 T 1 -1 3.0989 0 0 0.27629 0 0 645.3861164044937 372.15842615299067 1017.5445425574844 0 0 0 0 0 0 0 0 0 T 0.27629 + + 2 + NaN NaN 85524.2 NaN 21313 4675 25987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25991 101.46 NaN 57711 35 0 5861.1 0.261 + -1 FSRDCYDC 8 36 533.1910509521447 NaN 0 532.7957153320312 PEAK HCD FTMS 0 0 0 25987 5758.5986328125 0.3428583904414641 8 -0.127166748046875 4 Carbamidomethyl (C) _FSRDC(Carbamidomethyl (C))YDC_ REV__ENSG00000100319|ENST00000344318|ZMAT5;REV__ENST00000489010.1_1_22:30144317-30144539:-|nuORF 2.0597508629832335 0.38822285293237185 1 C 1 -1 5.4846 0 0 0.51529 0 0 131.88117309393925 826.4504155306232 958.3315886245625 0 0 0 0 0 0 0 0 0 C 0.51529 + + 2 + NaN NaN 88390.9 NaN 21314 4675 25987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25994 101.47 NaN 44479 35 0 5155.8 0.327 + 32893 YAAHASCETL 10 35 533.2363788039804 NaN 0 532.8060913085938 PEAK HCD FTMS 0 0 0 25993 5322.5830078125 0.4640593027315967 1 -0.0091705322265625 1 Unmodified _YAAHASCETL_ REV__ENSG00000140406|ENST00000267984|TLNRD1 1.844237919475145 0.33860587697544825 1 C 1 -1 5.4846 0 0 0.51524 0 0 131.97396502807948 826.451060574128 958.4250256022074 0 0 0 0 0 0 0 0 0 C 0.51524 + + 1 + NaN NaN 104857.9 NaN 21315 4677 25993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25995 101.48 NaN 59501 35 0 7059.8 0.261 + 8837 HLFGARWK 8 31 507.78486620542714 NaN 0 507.7846374511719 PEAK HCD FTMS 0 0 0 25993 3397.801513671875 0.153308057590817 1 -0.0091705322265625 2 Unmodified _HLFGARWK_ REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97657.3 NaN 21316 4677 25993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25997 101.48 NaN 427750 35 0 60657 0.326 + 28646 TRPRSQSHS 9 62 528.2710007593818 1054.5274485855634 2 528.2710571289062 MULTI HCD FTMS 0 0 0 25996 49599.671875 0.21168072701714516 -2 0.016387939453125 1 Unmodified _TRPRSQSHS_ ENST00000426911.2_1_X:136066981-136067308:-|nuORF 9.38312468134398 0.279288223203164 1 [YV]AV 4 9 26.287 0 0 2.4927 0 0 0 619.2672001326915 619.2672001326915 10.713337517843655 0 0 0 0 0 2 0 0 [YV]AV 2.4927 - 86 NaN NaN 143627.8 NaN 21317 4678 25996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25998 101.49 NaN 157570 35 0 11002 0.261 + 29158 TYIPPLLVAF 10 52 567.3339042558348 1132.6532555784695 2 567.333740234375 MULTI HCD FTMS 0 0 0 25996 56876.3828125 0.2330156225494746 19 -0.291290283203125 2 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 41.8396318013385 0.12944265636084 1 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 + 74.359 0 0 6.565 6.565 94.355 0 0 0 24.88438100576431 53.389399919613965 24.88438100576431 74.35850004969453 0 1.8494850021680094 2 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 6.565 + + 143 NaN NaN 125645.6 NaN 21318 4678 25996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 25999 101.49 NaN 76974 35 0 14971 0.261 + 7011 FPYGLFELV 9 39 542.789556929193 1083.564560925186 2 542.7893676757812 MULTI HCD FTMS 0 0 0 25996 26389.74609375 0.5724694541445677 2 -0.0422821044921875 3 Unmodified _FPYGLFELV_ ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF 11.640296217721598 0.25978676193971967 1 G[{M(Oxidation (M))|F}E]{I|L}V 5 4 26.823 0 0 2.4754 0 0 520.2760487287125 0 520.2760487287125 0 24.058371422636533 0 0 0 0.8494850021680094 0 0 0 G[{M(Oxidation (M))|F}E]{I|L}V 2.4754 - 11 NaN NaN 94493.2 NaN 21319 4678 25996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26000 101.49 NaN 92408 35 0 13467 0.261 + 7696 FYLISPLDF 9 37 557.7947810962871 1113.5750092593742 2 557.7943115234375 MULTI HCD FTMS 0 0 0 25996 24768.005859375 0.9620570231036117 -6 0.06508636474609375 4 Unmodified _FYLISPLDF_ ENSG00000120925|ENST00000527424|RNF170;nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}S[{I|L}P]D{M(Oxidation (M))|F} 6 3 26.432 0 0 2.3736 0 0 389.2708912580094 0 389.2708912580094 0 26.43175948177209 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}S[{I|L}P]D{M(Oxidation (M))|F} 2.3736 - 13 NaN NaN 105395.7 NaN 21320 4678 25996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26001 101.5 NaN 33217 35 0 4669.8 0.261 + 33173 YERKIIIK 8 27 531.8352136656828 NaN 0 531.8348388671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YERKIIIK_ REV__ENST00000467530.5_1_1:85959978-85960173:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84265.8 NaN 21321 4678 25996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26002 101.5 NaN 47788 35 0 8283.6 0.261 + -1 YNIKHFFMK 9 33 622.3165823808257 1242.6186118284513 2 622.3172607421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 7.289230182591677 0.29575926068275815 1 [YN]{I|L} 3 -1 35.458 0 0 2.8535 0 0 0 849.4048444984782 849.4048444984782 34.74423738776309 0 0 0 0 0.5 2 0 0 [YN]{I|L} 2.8535 + + 5 + NaN NaN 99709.3 NaN 21322 4678 25996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26004 101.51 NaN 1173200 35 0 382810 0.327 + 10143 IFPLSTLVI 9 49 501.81533803195805 1001.6161231307161 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26003 566845.875 0.29555866880314097 -1 0.02269744873046875 1 Unmodified _IFPLSTLVI_ REV__ENST00000539116.1_1_12:66000071-66000152:+|nuORF 77.98433622928108 0.006504613272346738 1 T{I|L}MT{I|L}V{I|L} 7 -1 64.456 0 0 6.4352 0 0 212.15168959785314 0 212.15168959785314 0 54.67493855073293 0 0 0 1.4247425010840047 0 1.274227503252014 0 T{I|L}MT{I|L}V{I|L} 6.4352 - 126 NaN NaN 278333.9 NaN 21323 4679 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26005 101.51 NaN 685960 35 0 156670 0.261 + 31433 VYAVPILIF 9 45 517.8178897359913 1033.6212265387826 2 517.8179931640625 MULTI HCD FTMS 0 0 0 26003 244026.796875 0.39307530028601545 3 -0.05886077880859375 2 Unmodified _VYAVPILIF_ ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 79.93452657146344 0.0058735632865073864 1 [YV]AV[{I|L}P]{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 70.168 0 0 6.7885 6.7885 94.716 0 0 0 11.805234507957891 11.805234507957891 11.805234507957891 70.16765926813832 0 2.305462187404089 1.3010299956639813 0 0 + + [YV]AV[{I|L}P]{I|L}{I|L}{M(Oxidation (M))|F} 6.7885 + + 81 NaN NaN 196309.5 NaN 21324 4679 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26006 101.51 NaN 24928 35 0 4016 0.261 + 23308 RIPLKNIYRL 10 21 643.4063394567853 NaN 0 643.4044189453125 PEAK HCD FTMS 0 0 0 26003 5138.8828125 0.16776223042302785 -1 0.02269744873046875 3 Unmodified _RIPLKNIYRL_ ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1;PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant 0.4007161486938917 0.3398413315442166 1 M 1 10 4.6041 0 0 0.35835 0 0 678.4633614313456 472.2709139459594 1150.734275377305 0 0 0 0 0 0 0 0 0 M 0.35835 - 1 + NaN NaN 82483.8 NaN 21325 4679 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26007 101.52 NaN 54123 35 0 6274.6 0.261 + 23239 RGFLLCPLVC 10 31 560.8016903944991 NaN 0 560.8014526367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RGFLLCPLVC_ ENST00000605201.1_1_14:35591893-35592281:+|nuORF 4.3292370932331545 0.3364790620948225 1 RMM 3 9 11.682 0 0 1.0435 0 0 360.1883584007532 338.20807825260005 698.3964366533532 0 0 0 0 0 0 0 0 0 RMM 1.0435 - 16 + NaN NaN 102508 NaN 21326 4679 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26008 101.52 NaN 34895 35 0 3754 0.261 + 35538 YYGPLNLLTF 10 24 600.8185051715982 1199.6224574099963 2 600.8192749023438 MULTI HCD FTMS 0 0 0 26003 13267.1806640625 0.5567889259209199 -6 0.08069610595703125 5 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 8.155526934196011 0.43213520406898465 1 T{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1648 0 0 933.5016346662125 0 933.5016346662125 0 25.969100130080562 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1648 + + 3 NaN NaN 89966.6 NaN 21327 4679 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26010 101.53 NaN 351640 35 0 40148 0.327 + 29621 VAPIIFLTI 9 46 493.818041042959 NaN 0 493.8180236816406 PEAK HCD FTMS 0 0 0 26009 256660.71875 1 0 0 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.08420460767846881 1 T{I|L} 2 -1 23.711 0 0 2.4057 0 0 131.0943509598772 637.3717747329 768.4661256927773 0 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 T{I|L} 2.4057 + + 19 + NaN NaN 138916.2 NaN 21328 4680 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26011 101.53 NaN 56542 35 0 12873 0.261 + 634 APIAIMLWKIL 11 35 634.8931992459982 1267.7718455587963 2 634.8931274414062 MULTI HCD FTMS 0 0 0 26009 68907.7578125 0.46174737087218926 4 -0.0652313232421875 2 Unmodified _APIAIMLWKIL_ REV__ENSG00000173208|ENST00000308666|ABCD2 0.4545168274142398 0.41692731010159206 1 P 1 -1 9.6041 0 0 0.75756 0 0 906.5538412636776 261.13376794986567 1167.6876092135433 0 0 0 0 0 0.5 0 0 0 P 0.75756 + + 2 + NaN NaN 86687 NaN 21329 4680 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26012 101.53 NaN 79243 35 0 8627.8 0.263 + 19143 NGKITAYIL 9 36 496.7944948364074 NaN 0 496.7947998046875 PEAK HCD FTMS 0 0 0 26009 52880.98046875 0.12594057743178302 26 -0.34960174560546875 3 Unmodified _NGKITAYIL_ ENSG00000187323|ENST00000442544|DCC;ROCK1-DCC|1|fusion 3.944395688203298 0.27613285122220627 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90255.3 NaN 21330 4680 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26013 101.54 NaN 23331 35 0 4726.3 0.261 -1 0 23 639.5242309570312 NaN 0 639.5242309570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101424.4 NaN 21331 4680 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26014 101.54 NaN 77746 35 0 12750 0.264 + 18519 MSRLPLLL 8 47 471.7956750515225 NaN 0 471.7957763671875 PEAK HCD FTMS 0 0 0 26009 17907.849609375 0.578892027150187 28 -0.36865997314453125 5 Unmodified _MSRLPLLL_ REV__ENST00000405333.5_1_2:10581650-10581749:-|nuORF 2.8892196856762586 0.38822285293237185 1 P 1 -1 3.9794 0 0 0.42263 0 0 487.26302871457 354.2406405084594 841.5036692230294 0 0 0 0 0 0 0 0 0 P 0.42263 + + 5 + NaN NaN 92167.3 NaN 21332 4680 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26016 101.55 NaN 286530 35 0 70481 0.327 -1 MYIIPVVLF 9 35 555.816937085154 1109.619321237108 2 555.8170166015625 MULTI HCD FTMS 0 0 0 26015 106491.171875 0.15518280209783739 -16 0.25400543212890625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 36.466142684027034 0.08156716203802528 1 V{I|L}{M(Oxidation (M))|F} 3 -1 38.94 0 0 3.5093 0 0 732.3881028306611 0 732.3881028306611 0 35.84121882396211 0 0 0 1.4247425010840047 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.5093 + + 22 + NaN NaN 135322.9 NaN 21333 4681 26015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26017 101.55 NaN 138600 35 0 52200 0.263 + 31116 VTLTVPKN 8 37 436.2679131054318 NaN 0 436.2677917480469 PEAK HCD FTMS 0 0 0 26015 3925.84814453125 0.07140566186805113 5 -0.0747833251953125 2 Unmodified _VTLTVPKN_ REV__ENSG00000101337|ENST00000398022|TM9SF4 7.910154910731844 0.38822285293237185 1 R 1 -1 4.6041 0 0 0.52889 0 0 357.20518548645106 354.1816500299438 711.3868355163949 0 0 0 0 0 0 0 0 0 R 0.52889 - 1 + NaN NaN 119779.4 NaN 21334 4681 26015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26018 101.55 NaN 178380 35 0 10660 0.261 + 29159 TYIPPLLVAF 10 55 567.3339042558348 1132.6532555784695 2 567.3346557617188 MULTI HCD FTMS 0 0 0 26015 36382.6015625 0.14905509341202755 22 -0.298309326171875 3 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 36.12702656103203 0.1790159924230938 1 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F} 7 5 43.46 0 0 3.837 0 0 311.1536961075695 0 311.1536961075695 0 21.522044440423898 0 0 0 1.6989700043360187 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F} 3.837 - 185 + NaN NaN 118290.8 NaN 21335 4681 26015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26019 101.56 NaN 29728 35 0 5793.5 0.261 -1 0 21 643.3622445019446 642.3549680353445 1 643.4060668945312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82692.9 NaN 21336 4681 26015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26020 101.56 NaN 70601 35 0 23391 0.262 + 18479 MQGHLKDMK 9 19 544.2736506221715 1086.532748311143 2 544.2739868164062 MULTI HCD FTMS 0 0 0 26015 4696.29443359375 0.08475592050005971 5 -0.0747833251953125 5 Unmodified _MQGHLKDMK_ ENST00000396408.7_1_19:53911016-53911145:+|nuORF 1.4819007175156935 0.3397831423917744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96895.1 NaN 21337 4681 26015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26022 101.56 NaN 436070 35 0 45182 0.326 + 20652 PFIKQRHV 8 68 512.8063995913996 1023.5982462495991 2 512.806396484375 MULTI HCD FTMS 0 0 0 26021 161837.5 0.2992716767107715 2 -0.0259552001953125 1 Unmodified _PFIKQRHV_ ENST00000357028.6_1_9:134735773-134735821:-|nuORF 19.438996006549623 0.45076845602799126 1 {I|L}M{I|L}S{I|L}T 6 7 63.11 0 0 6.1655 0 0 0 362.20664392642817 362.20664392642817 52.14123782136497 0 0 0 0 0.9247425010840047 2 0.3252574989159953 0 {I|L}M{I|L}S{I|L}T 6.1655 - 170 + NaN NaN 168933.6 NaN 21338 4682 26021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26023 101.57 NaN 106320 35 0 11913 0.261 + -1 VMLCFLFLI 9 39 586.3153489176133 NaN 0 586.3148193359375 PEAK HCD FTMS 0 0 0 26021 34543.171875 0.8145972612632861 5 -0.07128143310546875 2 Carbamidomethyl (C),Oxidation (M) _VM(Oxidation (M))LC(Carbamidomethyl (C))FLFLI_ REV__ENSG00000111886|ENST00000402938|GABRR2;REV__nc|ENSG00000111886|P28476-2|GABRR2 2.302733041254933 0.2840881193086663 1 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.93704 0 0 132.09968249344917 775.3453463190061 907.4450288124553 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93704 + + 30 + NaN NaN 118191.3 NaN 21339 4682 26021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26024 101.57 NaN 61100 35 0 15664 0.261 + -1 KHCRQCRL 8 28 579.2928195129807 NaN 0 579.2930908203125 PEAK HCD FTMS 0 0 0 26021 38047.6640625 0.6082497564085183 28 -0.3517913818359375 3 2 Carbamidomethyl (C) _KHC(Carbamidomethyl (C))RQC(Carbamidomethyl (C))RL_ REV__ENSG00000146215|ENST00000372569|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5-2|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5-4|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5|CRIP3 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94701 NaN 21340 4682 26021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26026 101.58 NaN 161490 35 0 23271 0.327 -1 DYMNLLGMIF 10 37 624.7856756183925 1247.5567983035849 2 624.7852783203125 MULTI HCD FTMS 0 0 0 26025 50547.6796875 0.36229206614283915 -14 0.21814727783203125 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 26.268140514670165 0.2654086933305545 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 37.218 0 0 2.9833 0 0 652.2524669795057 0 652.2524669795057 0 37.21848749616356 0 0 0 1.5 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.9833 + + 16 NaN NaN 118678.7 NaN 21341 4683 26025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26027 101.58 NaN 119890 35 0 5133.9 0.261 -1 0 47 539.9851202760475 1616.9335314283423 3 539.9849853515625 MULTI HCD FTMS 0 0 0 26025 28360.107421875 0.36564910558797126 6 -0.10071563720703125 2 NaN NaN 1 A 1 -1 8.0989 0 0 0.50088 0 0 1369.795208529708 173.0819033258422 1542.87711185555 0 0 0 0 0 0.5 0 0 0 A 0.50088 - 8 + NaN NaN 119357.9 NaN 21342 4683 26025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26028 101.59 NaN 56957 35 0 15060 0.261 + 34442 YPETLVNLIVL 11 29 637.3734986471217 1272.7324443610432 2 637.3731689453125 MULTI HCD FTMS 0 0 0 26025 9718.9970703125 0.20481546538068654 -3 0.05226898193359375 3 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 7.101721422024254 0.3877749288398915 1 V{I|L} 2 9 25.969 0 0 2.0404 0 0 1042.5654802504084 0 1042.5654802504084 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{I|L} 2.0404 + + 4 NaN NaN 97587.1 NaN 21343 4683 26025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26030 101.59 NaN 158730 35 0 33764 0.327 + 12318 KMMMMIMMKK 10 46 434.88223622800285 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 26029 72832.9765625 0.7100114156320513 -102 1.753448486328125 1 Unmodified _KMMMMIMMKK_ ENST00000552056.5_1_12:76441358-76444342:-|nuORF 0.6976657623105312 0.3395871838311286 1 Y 1 10 3.4949 0 0 0.40275 0 0 289.3748717706557 412.2856006248287 701.6604723954845 0 0 0 0 0 0 0 0 0 Y 0.40275 - 1 + NaN NaN 109222.1 NaN 21344 4684 26029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26031 101.6 NaN 176580 35 0 14350 0.261 + 19796 NYAWVYYHL 9 37 614.7934619760986 1227.572371018997 2 615.2938842773438 MULTI HCD FTMS 0 0 0 26029 25972.783203125 0.5814513721363288 -26 0.42639923095703125 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 31.26834338654808 0.10542797264966089 1 [YN]AWV 5 4 54.437 0 0 4.4345 0 0 0 591.2567895648982 591.2567895648982 50.45757490560675 0 0 0 0 1.7614393726401687 1.6989700043360187 0 0 + [YN]AWV 4.4345 + + 57 + NaN NaN 106088.5 NaN 21345 4684 26029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26032 101.6 NaN 193820 35 0 10584 0.261 + 29160 TYIPPLLVAF 10 60 567.3339042558348 1132.6532555784695 2 567.3331298828125 MULTI HCD FTMS 0 0 0 26029 25279.259765625 0.10356605256166922 25 -0.31622314453125 3 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 43.85829265575387 0.11192494793849486 1 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F} 7 5 50.425 0 0 4.452 0 0 311.1489720778689 0 311.1489720778689 0 32.46661994673893 0 0 0 1.5484550065040281 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F} 4.452 - 381 + NaN NaN 107216.3 NaN 21346 4684 26029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26033 101.6 NaN 151530 35 0 40767 0.261 -1 0 33 583.3774538030867 582.3701773364867 1 583.37744140625 MULTI HCD FTMS 0 0 0 26029 47961 0.2528133738965322 -8 0.1239013671875 4 NaN NaN 1 [Y{I|L}]{I|L} 3 -1 6.9627 0 0 1.1956 0 0 0 190.11389616877105 190.11389616877105 6.8740810491245 0 0 0 0 0 0 0 0 [Y{I|L}]{I|L} 1.1956 - 4 NaN NaN 112330.5 NaN 21347 4684 26029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26034 101.61 NaN 88895 35 0 7399.3 0.261 + 31728 VYLITIIAL 9 46 509.83064281274426 NaN 0 509.81341552734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VYLITIIAL_ ENSG00000187474|ENST00000339223|FPR3 7.910154910731844 0.25691533546754686 1 P 1 9 8.0989 0 0 0.79585 0 0 605.3783133581073 312.1926668756469 917.5709802337542 0 0 0 0 0 0.5 0 0 0 P 0.79585 - 3 + NaN NaN 102765.2 NaN 21348 4684 26029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26036 101.61 NaN 225010 35 0 36842 0.327 + 32707 WPLPPDWPLP 10 42 609.3211448624703 1216.6277367917405 2 609.3209228515625 MULTI HCD FTMS 0 0 0 26035 60838.3828125 0.481153766163602 -12 0.18509674072265625 1 Unmodified _WPLPPDWPLP_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 9.38312468134398 0.42334543440173333 1 WP{I|L}P 4 6 31.938 0 0 2.6251 0 0 705.3489857404312 0 705.3489857404312 0 27.95880017344075 0 0 0 0 0 0 0 + WP{I|L}P 2.6251 + + 16 NaN NaN 131862.5 NaN 21349 4685 26035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26037 101.61 NaN 163700 35 0 24470 0.261 -1 CCKGFCIDIL 10 50 586.2687385369386 1170.522924140677 2 586.2691040039062 MULTI HCD FTMS 0 0 0 26035 28705.87890625 0.32788439195148705 -4 0.06514739990234375 2 Carbamidomethyl (C) _CCKGFC(Carbamidomethyl (C))IDIL_ ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000183454|Q12879-2|GRIN2A 12.240655878213236 0.39661705172222156 1 {[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L} 9 -1 + 45.824 0 0 3.9149 3.9149 84.674 0 0 0 7.147642715192504 30.2512186568557 7.147642715192504 9.208187539523749 0 1.774227503252014 0 0 0 {[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}D]|MM}E[K{I|L}]{M(Oxidation (M))|F}V[C(Carbamidomethyl (C))N];{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[K{I|L}]V[C(Carbamidomethyl (C))N];[YK][DV]HHV[C(Carbamidomethyl (C))N] 3.9149;3.1282;2.4035;2.4035;0.394 -;-;-;-;- 128 NaN NaN 124360.5 NaN 21350 4685 26035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26039 101.62 NaN 206500 35 0 12301 0.327 + 29293 TYLTIFDLF 9 67 566.799043860449 NaN 0 566.8096313476562 PEAK HCD FTMS 0 0 0 26038 15511.8466796875 0.5664549123225323 7 -0.1064605712890625 1 Unmodified _TYLTIFDLF_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 21.74664581756881 0.17567436591797916 1 {I|L}{I|L} 2 7 17.959 0 0 1.5871 0 0 595.3165802972668 307.0756014459594 902.3921817432263 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L} 1.5871 - 169 + NaN NaN 120044 NaN 21351 4686 26038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26040 101.62 NaN 120590 35 0 15464 0.261 -1 YVRTAWML 8 44 528.2710007593818 1054.5274485855634 2 528.2717895507812 MULTI HCD FTMS 0 0 0 26038 121585.4296875 0.5189004519184026 6 -0.09342193603515625 2 Oxidation (M) _YVRTAWM(Oxidation (M))L_ ENST00000273610.3_1_3:48599595-48600222:-|nuORF 5.230669730166228 0.5342319408533849 1 V{I|L} 2 -1 15.573 0 0 1.4768 0 0 824.3687611310562 0 824.3687611310562 0 5.3959062302381255 0 0 0 0 0 0 0 V{I|L} 1.4768 - 8 NaN NaN 90836.7 NaN 21352 4686 26038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26041 101.63 NaN 193520 35 0 15071 0.261 + 19797 NYAWVYYHL 9 46 614.7934619760986 1227.572371018997 2 615.2939453125 MULTI HCD FTMS 0 0 0 26038 30575.853515625 0.684500072320339 -24 0.37793731689453125 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 38.175570920033316 0.07371992880350783 1 [YN]AWV 5 4 54.437 0 0 4.4345 0 0 0 591.2558395454555 591.2558395454555 50.41325298820567 0 0 0 0 1.7614393726401687 1.6989700043360187 0 0 + [YN]AWV 4.4345 + + 116 + NaN NaN 125268 NaN 21353 4686 26038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26042 101.63 NaN 21376 35 0 4069.8 0.261 + -1 CQQDMRHEC 9 22 640.2326049804688 NaN 0 640.2326049804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))QQDM(Oxidation (M))RHEC(Carbamidomethyl (C))_ REV__ENSG00000008300|ENST00000164024|CELSR3;REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89407.8 NaN 21354 4686 26038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26044 101.64 NaN 1280600 35 0 415220 0.327 + 10144 IFPLSTLVI 9 47 501.81533803195805 1001.6161231307161 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26043 476742.71875 0.24857805186522744 7 -0.0999908447265625 1 Unmodified _IFPLSTLVI_ REV__ENST00000539116.1_1_12:66000071-66000152:+|nuORF 67.34385681178166 0.00994769994983633 1 T{I|L}MT{I|L}V{I|L} 7 -1 65.209 0 0 6.5104 0 0 212.15274245429845 0 212.15274245429845 0 55.6048012094972 0 0 0 1.5 0 1.274227503252014 0 T{I|L}MT{I|L}V{I|L} 6.5104 - 81 NaN NaN 289079.2 NaN 21355 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26045 101.64 NaN 160730 35 0 28460 0.261 -1 MIKFMFILI 9 32 594.3317055826321 1186.6488582320642 2 594.3318481445312 MULTI HCD FTMS 0 0 0 26043 88156.015625 0.5722345616191867 -5 0.07128143310546875 2 2 Oxidation (M) _M(Oxidation (M))IKFM(Oxidation (M))FILI_ ENST00000239231.6_1_5:167978076-167978319:-|nuORF 7.289230182591677 0.29575926068275815 1 {I|L}{I|L}{I|L} 3 -1 31.198 0 0 2.6291 0 0 829.3842640607437 0 829.3842640607437 0 31.197887582883936 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 2.6291 + + 4 NaN NaN 111909.3 NaN 21356 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26046 101.64 NaN 189320 35 0 25328 0.261 + 32157 VYSPFVLLNTL 11 44 633.360724491628 1264.706896050056 2 633.8616333007812 MULTI HCD FTMS 0 0 0 26043 37467 0.1852653687235045 -10 0.16201019287109375 3 Unmodified _VYSPFVLLNTL_ ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-2|ZMYM3 28.233623360808718 0.2127292296419295 1 V{I|L}{I|L} 3 8 31.242 0 0 2.4703 0 0 593.2816773994685 343.1626070611938 936.4442844606624 0 0 0 0 0 1.805462187404089 0 0 0 + V{I|L}{I|L} 2.4703 + + 27 + NaN NaN 113654.9 NaN 21357 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26047 101.65 NaN 56805 35 0 5177.6 0.261 + -1 CPCCCCHHA 9 37 545.6606880646166 NaN 0 545.6607666015625 PEAK HCD FTMS 0 0 0 26043 49598.25390625 1 0 0 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PC(Carbamidomethyl (C))CCCHHA_ REV__ENSG00000197191|ENST00000650725|CYSRT1 0 0.29524684227089293 1 W 1 -1 0.48455 0 0 0.044482 0 0 631.0336431196644 269.16803919010005 900.2016823097645 0 0 0 0 0 0 0 0 0 W 0.044482 - 1 + NaN NaN 91273.8 NaN 21358 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26048 101.65 NaN 106410 35 0 11381 0.261 + 11131 IYILTFPLY 9 37 571.828314992894 1141.6420770525879 2 571.8281860351562 MULTI HCD FTMS 0 0 0 26043 22456.751953125 0.31617013387543613 6 -0.09035491943359375 5 Unmodified _IYILTFPLY_ ENSG00000185432|ENST00000332160|METTL7A 16.942295170755138 0.21397866736869717 1 {M(Oxidation (M))|F}[{I|L}P]Y 4 5 25.445 0 0 2.2288 0 0 603.3640300468745 0 603.3640300468745 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}[{I|L}P]Y 2.2288 + + 7 NaN NaN 97228.3 NaN 21359 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26049 101.65 NaN 76038 35 0 4971.3 0.261 + 16912 LYGFFFASL 9 42 532.7758461238243 1063.5371393144485 2 532.7764282226562 MULTI HCD FTMS 0 0 0 26043 22519.826171875 0.623476868121499 -5 0.07128143310546875 6 Unmodified _LYGFFFASL_ ENSG00000102384|ENST00000682095|CENPI;nc|ENSG00000102384|Q92674-2|CENPI 28.486842064014134 0.11819662193267319 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}AS{I|L} 5 4 46.172 0 0 4.3414 0 0 480.2384510724625 0 480.2384510724625 0 46.172137691284405 0 0 0 1.75 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}AS{I|L} 4.3414 + + 28 NaN NaN 93740 NaN 21360 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26050 101.66 NaN 58554 35 0 10591 0.261 + 16357 LRYNFHPSL 9 30 573.8055870298091 1145.596621126418 2 573.8056030273438 MULTI HCD FTMS 0 0 0 26043 26394.126953125 0.19969558148508404 -5 0.07128143310546875 7 Unmodified _LRYNFHPSL_ ENSG00000165152|ENST00000374848|PGAP4 6.2057823575117 0.30397260197431997 1 S{I|L} 2 7 25.969 0 0 2.2669 0 0 927.4709797391064 0 927.4709797391064 0 18.979400086720375 0 0 0 0.5 0 0 0 + S{I|L} 2.2669 + + 16 NaN NaN 98989.2 NaN 21361 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26051 101.66 NaN 52974 35 0 8630.1 0.261 + 20528 PDSLFFFLV 9 33 542.789556929193 1083.564560925186 2 542.7890625 MULTI HCD FTMS 0 0 0 26043 29328.537109375 0.6362202792788136 11 -0.1514129638671875 8 Unmodified _PDSLFFFLV_ ENST00000589219.1_1_17:40925493-40926767:+|nuORF 4.3292370932331545 0.3181982124262546 1 {I|L}V 2 7 20.969 0 0 1.9352 0 0 853.3987013879961 0 853.3987013879961 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}V 1.9352 + + 1 NaN NaN 88579 NaN 21362 4687 26043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26053 101.67 NaN 127490 35 0 13756 0.327 + 29622 VAPIIFLTI 9 37 493.818041042959 NaN 0 493.81787109375 PEAK HCD FTMS 0 0 0 26052 42940.44921875 0.16730432856215946 8 -0.09281158447265625 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 18.13498045792455 0.19991664011725976 1 T{I|L} 2 -1 15.969 0 0 1.6202 0 0 131.0945499671812 637.3717135065061 768.4662634736874 0 0 0 0 0 0.5 0 0 0 T{I|L} 1.6202 + + 10 + NaN NaN 108926.2 NaN 21363 4688 26052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26054 101.67 NaN 200950 35 0 11372 0.261 + 14251 LCIFMFVLF 9 69 566.799043860449 NaN 0 566.8092041015625 PEAK HCD FTMS 0 0 0 26052 11713.8681640625 0.4277619744991833 9 -0.10889434814453125 2 Unmodified _LCIFMFVLF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF 20.871210003555333 0.18155047927120396 1 {I|L}{I|L}{M(Oxidation (M))|F}AV{I|L} 6 4 16.86 0 0 1.4899 0 0 310.08159494570424 162.0560701959594 472.13766514166366 0 0 0 0 0 1.1989700043360187 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}AV{I|L} 1.4899 - 167 + NaN NaN 116440.1 NaN 21364 4688 26052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26056 101.68 NaN 942200 35 0 225060 0.327 + 18655 MYIIPVVLF 9 31 555.816937085154 1109.619321237108 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26055 430915.03125 0.6279450290390766 -8 0.1333160400390625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 49.085 0 0 4.4236 0 0 423.18320132700245 0 423.18320132700245 0 49.085390679490075 0 0 0 2.305462187404089 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.4236 + + 44 + NaN NaN 231440.1 NaN 21365 4689 26055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26057 101.68 NaN 100220 35 0 9916.3 0.261 + 258 AFILGSGLLSF 11 34 562.8214238015288 1123.6282946698575 2 562.8223876953125 MULTI HCD FTMS 0 0 0 26055 25913.537109375 0.30067920703565537 -3 0.05853271484375 2 Unmodified _AFILGSGLLSF_ ENSG00000170271|ENST00000326080|FAXDC2;ENST00000423554.5_1_5:154202945-154230090:-|nuORF;ENST00000517448.5_1_5:154210261-154230090:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2 60.07390631473393 0.040050767047445146 1 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}GS{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 11 0 + 62.963 0 0 5.6036 5.6036 92.465 0 0 0 5.862435673934279 47.478660691108665 5.862435673934279 62.963210756148946 0 2 0 0.2742275032520141 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}GS{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 5.6036 + + 58 NaN NaN 98832.4 NaN 21366 4689 26055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26058 101.69 NaN 97040 35 0 8446.9 0.261 + 30820 VPVRRWPF 8 44 528.809006101803 1055.603459270406 2 528.80908203125 MULTI HCD FTMS 0 0 0 26055 9236.76171875 0.08095202784468403 13 -0.15537261962890625 3 Unmodified _VPVRRWPF_ ENST00000454741.5_1_22:28395954-28396164:+|nuORF 5.760428011301431 0.5334459684533844 1 P{M(Oxidation (M))|F} 2 6 18.443 0 0 1.7472 0 0 793.4725521432559 0 793.4725521432559 0 14.463950151760656 0 0 0 0.5 0 0 0 + P{M(Oxidation (M))|F} 1.7472 + + 15 + NaN NaN 107817.6 NaN 21367 4689 26055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26060 101.69 NaN 277550 35 0 37065 0.327 + 6599 FPLPAARRP 9 51 512.8064060799994 1023.5982592267989 2 512.806640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 21.74664581756881 0.17247014374749275 1 {I|L}T{I|L}S{I|L}PE 7 -1 52.695 0 0 5.1481 0 0 252.14489943672032 0 252.14489943672032 0 27.9191104062609 0 0 0 1 0 0 0 {I|L}T{I|L}S{I|L}PE 5.1481 - 72 NaN NaN 137096.6 NaN 21368 4690 26059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26061 101.7 NaN 26477 35 0 3129.3 0.261 + 35616 YYIFIPSKF 9 20 589.3195864991164 NaN 0 589.3199462890625 PEAK HCD FTMS 0 0 0 26059 4197.47265625 0.32026558229801055 5 -0.05780029296875 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 5.731851221503515 0.26747109115447115 1 {I|L} 1 8 11.99 0 0 1.019 0 0 326.133178269914 734.3876436822874 1060.5208219522015 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.019 + + 1 + NaN NaN 87629.4 NaN 21369 4690 26059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26063 101.7 NaN 172390 35 0 25659 0.327 -1 DYMNLLGMIF 10 37 624.7856756183925 1247.5567983035849 2 624.7857055664062 MULTI HCD FTMS 0 0 0 26062 81475.8203125 0.5839643572996266 -6 0.090301513671875 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 32.78568957990786 0.20801173326193015 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 37.218 0 0 2.9833 0 0 652.2529063350421 0 652.2529063350421 0 31.73393743112328 0 0 0 1.5 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.9833 + + 16 NaN NaN 121962.1 NaN 21370 4691 26062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26064 101.7 NaN 84423 35 0 6778.2 0.261 -1 0 43 539.9851202760475 1616.9335314283423 3 539.985107421875 MULTI HCD FTMS 0 0 0 26062 53897.75390625 0.6949079993194872 14 -0.1617584228515625 2 NaN NaN 1 T 1 -1 3.9794 0 0 0.24611 0 0 1233.7179075043173 279.14438806705317 1512.8622955713704 0 0 0 0 0 0 0 0 0 T 0.24611 - 2 + NaN NaN 110162.2 NaN 21371 4691 26062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26065 101.71 NaN 55253 35 0 20740 0.261 + -1 LMEWDVCLF 9 32 635.7766804340496 1269.538807934899 2 635.7769165039062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))LM(Oxidation (M))EWDVC(Carbamidomethyl (C))LF_ REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 99068.9 NaN 21372 4691 26062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26067 101.71 NaN 116050 35 0 25954 0.327 -1 0 37 435.22224084189867 434.2149643752987 1 435.2224426269531 MULTI HCD FTMS 0 0 0 26066 107337.8984375 0.7068462771453542 -13 0.20745849609375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108777.4 NaN 21373 4692 26066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26068 101.72 NaN 59527 35 0 5018.5 0.261 + 28073 TGTYVVIDI 9 35 490.7684900591414 979.5224271850828 2 490.7688903808594 MULTI HCD FTMS 0 0 0 26066 23438.154296875 1 0 0 2 Unmodified _TGTYVVIDI_ ENST00000510501.1_1_8:59337214-59337583:-|nuORF 18.1463463914782 0.20357593197100715 1 VVVE{I|L} 5 6 41.498 0 0 4.2366 0 0 422.1810475080094 0 422.1810475080094 0 41.49797211252192 0 0 0 1.1549471895720984 0 0 0 VVVE{I|L} 4.2366 - 15 NaN NaN 90134 NaN 21374 4692 26066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26069 101.72 NaN 56960 35 0 16672 0.261 + -1 IPIWIICFVI 10 21 637.3737747400752 NaN 0 637.3739624023438 PEAK HCD FTMS 0 0 0 26066 47447.6796875 1 0 0 3 Carbamidomethyl (C) _IPIWIIC(Carbamidomethyl (C))FVI_ REV__ENSG00000268104|ENST00000598581|SLC6A14 1.844237919475145 0.33860587697544825 1 V 1 -1 6.9897 0 0 0.54919 0 0 131.09507741396925 1039.5532441298785 1170.6483215438477 0 0 0 0 0 0 0 0 0 V 0.54919 + + 2 + NaN NaN 91816 NaN 21375 4692 26066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26071 101.73 NaN 47434 35 0 7049.7 0.327 + 2081 DESVKKIKDVL 11 24 637.3737747400752 NaN 0 637.3740844726562 PEAK HCD FTMS 0 0 0 26070 5252.76171875 0.11070639814940898 1 -0.00963592529296875 1 Unmodified _DESVKKIKDVL_ REV__tr|U7SW15|U7SW15_FUSNU3-hydroxybutyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01419PE=3SV=1 4.897010918128616 0.3282287337590871 1 V 1 -1 10.485 0 0 0.82378 0 0 131.09380230744642 1039.549147479706 1170.6429497871525 0 0 0 0 0 0.3494850021680094 0 0 0 V 0.82378 + + 2 + NaN NaN 88390.4 NaN 21376 4693 26070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26072 101.73 NaN 221860 35 0 51224 0.261 + 19798 NYAWVYYHL 9 45 614.7934619760986 1227.572371018997 2 614.7939453125 MULTI HCD FTMS 0 0 0 26070 41117.05859375 0.594937342038158 -1 0.01303863525390625 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 53.832793166522166 0.026208976789938845 1 [YN]AWVY 6 3 59.13 0 0 4.8168 0 0 0 428.1936434381469 428.1936434381469 51.05774396488272 0 0 0 0 1.7614393726401687 1.6989700043360187 0 0 + [YN]AWVY 4.8168 + + 135 + NaN NaN 142734.9 NaN 21377 4693 26070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26074 101.74 NaN 481440 35 0 85493 0.327 + 11403 IYPPLLGALSF 11 68 595.8447347971612 1189.6749166611223 2 595.8448486328125 MULTI HCD FTMS 0 0 0 26073 181798.734375 0.2946752785089781 -10 0.14531707763671875 1 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 88.95385435242217 0.007759427153300959 1 [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 67.43 0 0 5.6679 5.6679 84.065 0 0 0 51.23165903880066 15.422207526295068 15.422207526295068 3.3932700116185828 0 2.5986198691406326 1.5228787452803376 0.6505149978319906 0 + + [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F} 5.6679;5.3827 +;- + 205 + NaN NaN 157810.4 NaN 21378 4694 26073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26075 101.74 NaN 133540 35 0 26415 0.261 -1 CCKGFCIDIL 10 40 586.2687385369386 1170.522924140677 2 586.77197265625 MULTI HCD FTMS 0 0 0 26073 28526.587890625 0.53974655408185 5 -0.064361572265625 2 Carbamidomethyl (C) _CCKGFC(Carbamidomethyl (C))IDIL_ ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000183454|Q12879-2|GRIN2A 12.240655878213236 0.39661705172222156 1 {[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 9 -1 + 68.822 0 0 5.8796 5.8796 87.781 0 0 0 7.147642715192504 63.3379001364149 7.147642715192504 9.208187539523749 0 2.1989700043360187 0 0 0 {[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}P[YK][EP] 5.8796;5.093;3.0202 -;-;- 109 NaN NaN 104246.4 NaN 21379 4694 26073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26076 101.74 NaN 53973 35 0 7282.9 0.261 + 20856 PIFMYLET 8 38 507.256488172058 NaN 0 507.2570495605469 PEAK HCD FTMS 0 0 0 26073 14361.6376953125 0.6319402786768197 -3 0.035430908203125 3 Unmodified _PIFMYLET_ ENST00000367108.7_1_1:206821114-206821159:+|nuORF 2.577480529830294 0.38822285293237185 1 V 1 8 3.0989 0 0 0.30607 0 0 443.1589591548598 467.2434481256469 910.4024072805067 0 0 0 0 0 0 0 0 0 V 0.30607 - 2 + NaN NaN 106575.1 NaN 21380 4694 26073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26078 101.75 NaN 63928 35 0 7298.7 0.327 -1 YILSRCPF 8 30 528.2710007593818 1054.5274485855634 2 528.2706298828125 MULTI HCD FTMS 0 0 0 26077 26254.248046875 0.11204748144013732 15 -0.1677703857421875 1 Carbamidomethyl (C) _YILSRC(Carbamidomethyl (C))PF_ ENSG00000171714|ENST00000324559|ANO5 2.302733041254933 0.5385759549224092 1 Y 1 -1 5.4846 0 0 0.5201 0 0 97.97393403653844 790.4507540338499 888.4246880703884 0 0 0 0 0 0 0 0 0 Y 0.5201 + + 4 + NaN NaN 105355.6 NaN 21381 4695 26077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26079 101.75 NaN 73861 35 0 19559 0.261 -1 MQNWLRFF 8 34 579.2796363933006 NaN 0 579.292724609375 PEAK HCD FTMS 0 0 0 26077 4841.5224609375 0.0625339869661593 -20 0.29819488525390625 2 Oxidation (M) _M(Oxidation (M))QNWLRFF_ ENSG00000002587|ENST00000002596|HS3ST1 2.577480529830294 0.38822285293237185 1 {I|L} 1 -1 5.4846 0 0 0.47422 0 0 275.10277757000114 765.3360079400999 1040.438785510101 0 0 0 0 0 0 0 0 0 {I|L} 0.47422 + + 1 + NaN NaN 110532.1 NaN 21382 4695 26077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26081 101.76 NaN 496680 35 0 162250 0.327 + 10145 IFPLSTLVI 9 41 501.81533803195805 1001.6161231307161 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26080 540665 0.2819077190399422 16 -0.18720245361328125 1 Unmodified _IFPLSTLVI_ REV__ENST00000539116.1_1_12:66000071-66000152:+|nuORF 42.09456458481378 0.05572955244001856 1 T{I|L}MT{I|L}V{I|L} 7 -1 55.693 0 0 5.5604 0 0 212.15179640937657 0 212.15179640937657 0 55.69344504429935 0 0 0 1 0 0.7742275032520141 0 T{I|L}MT{I|L}V{I|L} 5.5604 - 48 NaN NaN 158317.8 NaN 21383 4696 26080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26082 101.76 NaN 237310 35 0 56166 0.261 + 19799 NYAWVYYHL 9 46 614.7934619760986 1227.572371018997 2 614.7930908203125 MULTI HCD FTMS 0 0 0 26080 35653.4375 0.5158822655664832 2 -0.02904510498046875 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.04802738721622131 1 [YN]AWVYNW{I|L} 9 2 + 79.496 0 0 6.4759 6.4759 88.788 0 0 0 20.78488279132005 63.12235206668652 20.78488279132005 9.208187539523749 0 2.16944517631652 1.6989700043360187 0 0 [YN]AWVYNW{I|L};[YN]AWVYGGW{I|L};[YN]A[{M(Oxidation (M))|F}V]V{[DA]|[EG]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[VS]V[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.4759;5.7258;3.5055;3.5055 -;-;-;- 205 NaN NaN 128795.3 NaN 21384 4696 26080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26083 101.77 NaN 176600 35 0 11110 0.261 + 13756 KYPSPFFVF 9 58 566.2977416691025 1130.580930405005 2 566.2977294921875 MULTI HCD FTMS 0 0 0 26080 23572.009765625 0.469428583808556 29 -0.39134979248046875 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 1 W[NP]V{M(Oxidation (M))|F} 5 6 26.44 0 0 2.3386 0 0 469.25789076972814 0 469.25789076972814 0 2.6278813061184536 0 0 0 1.1747425010840047 0 0 0 W[NP]V{M(Oxidation (M))|F} 2.3386 - 145 NaN NaN 116612.7 NaN 21385 4696 26080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26084 101.77 NaN 33435 35 0 3853.1 0.261 + 35617 YYIFIPSKF 9 26 589.3189633146246 NaN 0 589.2936401367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.22786006501039813 1 {I|L} 1 8 10.485 0 0 0.89107 0 0 326.12637770171165 734.3881319635374 1060.514509665249 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.89107 + + 1 + NaN NaN 84683.1 NaN 21386 4696 26080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26086 101.77 NaN 382470 35 0 66057 0.327 + 21481 PYFERLLKEA 10 43 633.3458003780597 NaN 0 633.3604125976562 PEAK HCD FTMS 0 0 0 26085 23020.46875 1 0 0 1 Unmodified _PYFERLLKEA_ REV__ENSG00000168026|ENST00000683103|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-5|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-7|TTC21A;REV__nc|ENSG00000168026|Q8NDW8|TTC21A 12.240655878213236 0.32970798410958835 1 D{I|L}{I|L}[HN]{I|L}{I|L} 7 -1 17.211 0 0 1.3609 0 0 231.10741999264434 212.0676210992797 443.1750410919241 0 0 0 0 0 0 0 0 0 D{I|L}{I|L}[HN]{I|L}{I|L} 1.3609 - 66 + NaN NaN 143337 NaN 21387 4697 26085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26087 101.78 NaN 242990 35 0 71558 0.261 + -1 IYMVNDKIF 9 40 579.7953951353002 1157.5762373374002 2 580.28662109375 MULTI HCD FTMS 0 0 0 26085 15598.068359375 1 0 0 2 Oxidation (M) _IYM(Oxidation (M))VNDKIF_ REV__tr|U7SV88|U7SV88_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01172PE=4SV=1 10.823927491677226 0.26684000660059787 1 {I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 4 -1 18.188 0 0 1.5712 0 0 618.3012401867508 0 618.3012401867508 0 2.0804372978755445 0 0 0 0.5 0 0 0 {I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 1.5712 - 50 NaN NaN 118946.1 NaN 21388 4697 26085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26088 101.78 NaN 250470 35 0 24055 0.261 + 8234 GSDHCSSIVI 10 65 509.235860739753 NaN 0 509.2359924316406 PEAK HCD FTMS 0 0 0 26085 18548.841796875 0.8494612181928574 -4 0.048095703125 3 Unmodified _GSDHCSSIVI_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 3.944395688203298 0.33680843299986807 1 KT 2 10 7.9588 0 0 0.78299 0 0 229.99239911446847 554.298497422015 784.2908965364834 0 0 0 0 0 0 0 0 0 KT 0.78299 - 33 + NaN NaN 125275.7 NaN 21389 4697 26085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26090 101.79 NaN 125530 35 0 33079 0.327 + 32708 WPLPPDWPLP 10 45 609.3211448624703 1216.6277367917405 2 609.3214111328125 MULTI HCD FTMS 0 0 0 26089 94522.8203125 0.7475545680090031 1 -0.012939453125 1 Unmodified _WPLPPDWPLP_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 13.042465956692817 0.38911719078024076 1 WP{I|L}P 4 6 36.938 0 0 3.0361 0 0 705.348436424025 0 705.348436424025 0 36.938200260161125 0 0 0 0.5 0 0 0 + WP{I|L}P 3.0361 + + 6 NaN NaN 102930.2 NaN 21390 4698 26089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26091 101.79 NaN 147440 35 0 26283 0.261 + 2394 DPILDFNISL 10 45 573.8055870298091 1145.596621126418 2 573.8056640625 MULTI HCD FTMS 0 0 0 26089 86890.109375 0.6574027224980364 6 -0.0654296875 2 Unmodified _DPILDFNISL_ ENSG00000109062|ENST00000262613|NHERF1;nc|ENSG00000109062|O14745-2|NHERF1 35.61225514009592 0.18348312004207498 1 Y{M(Oxidation (M))|F}N{I|L}S{I|L} 6 5 51.988 0 0 4.538 0 0 390.20088393379064 0 390.20088393379064 0 24.847594070116017 0 0 0 1.1989700043360187 0 0.4247425010840047 0 Y{M(Oxidation (M))|F}N{I|L}S{I|L} 4.538 - 138 NaN NaN 116796.9 NaN 21391 4698 26089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26092 101.8 NaN 298530 35 0 34174 0.261 + 29609 VAPIIFLTI 9 63 493.8177999046536 985.6210468761072 2 493.818115234375 MULTI HCD FTMS 0 0 0 26089 107407.25 0.5689245605111103 6 -0.0654296875 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.07383188072201104 1 {I|L}T{I|L} 3 -1 38.333 0 0 3.8892 0 0 640.3954334943375 0 640.3954334943375 0 14.431642349600565 0 0 0 0.7887254899964358 0 0.4247425010840047 0 {I|L}T{I|L} 3.8892 + + 79 NaN NaN 135277.3 NaN 21392 4698 26089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26094 101.8 NaN 784230 35 0 194190 0.327 + 18656 MYIIPVVLF 9 39 555.816937085154 1109.619321237108 2 555.817138671875 MULTI HCD FTMS 0 0 0 26093 403483.34375 0.5879705780346399 2 -0.0206756591796875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 50.406 0 0 4.5426 0 0 423.1834824693329 0 423.1834824693329 0 50.406075122407685 0 0 0 2.3494850021680094 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.5426 + + 51 + NaN NaN 213631 NaN 21393 4699 26093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26095 101.8 NaN 126650 35 0 19288 0.261 -1 CCKGFCIDIL 10 44 586.2687385369386 1170.522924140677 2 586.2689208984375 MULTI HCD FTMS 0 0 0 26093 25832.91015625 0.29506875809593297 10 -0.10654449462890625 2 Carbamidomethyl (C) _CCKGFC(Carbamidomethyl (C))IDIL_ ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000183454|Q12879-2|GRIN2A 12.240655878213236 0.39661705172222156 1 {M(Oxidation (M))|F}V[C(Carbamidomethyl (C))N] 4 -1 23.188 0 0 1.981 0 0 632.317632860653 0 632.317632860653 0 7.614393726401687 0 0 0 1 0 0 0 {M(Oxidation (M))|F}V[C(Carbamidomethyl (C))N] 1.981 - 23 NaN NaN 110530.6 NaN 21394 4699 26093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26096 101.81 NaN 49278 35 0 5485.4 0.261 + 27853 TDLKKTTVI 9 35 509.8128967285156 NaN 0 509.8128967285156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TDLKKTTVI_ ENST00000388918.9_1_9:12709569-12709641:+|nuORF 3.2813086475875832 0.27934607848455584 1 V 1 8 6.9897 0 0 0.68687 0 0 131.0929498029313 784.4253634088499 915.5183132117811 0 0 0 0 0 0 0 0 0 + V 0.68687 + + 1 + NaN NaN 101770 NaN 21395 4699 26093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26098 101.81 NaN 98164 35 0 9171.1 0.411 + 6600 FPLPAARRP 9 64 512.8064060799994 1023.5982592267989 2 512.8064575195312 MULTI HCD FTMS 0 0 0 26097 37602.22265625 0.16072051817014904 8 -0.08080291748046875 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 15.847184025352803 0.2234401846867398 1 {I|L}S{I|L}PE 5 -1 37.206 0 0 3.6348 0 0 466.27632338691564 0 466.27632338691564 0 17.74227503252014 0 0 0 0.4247425010840047 0 0 0 {I|L}S{I|L}PE 3.6348 - 42 NaN NaN 109505.1 NaN 21396 4700 26097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26100 101.82 NaN 203870 35 0 27254 0.327 -1 DYMNLLGMIF 10 40 624.7856756183925 1247.5567983035849 2 624.785888671875 MULTI HCD FTMS 0 0 0 26099 77222.3203125 0.553478105252737 4 -0.041290283203125 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 36.506200033944 0.17572556831573002 1 {I|L}G{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 -1 52.959 0 0 4.245 0 0 652.2511606086788 0 652.2511606086788 0 47.47425010840047 0 0 0 1.5 0 0 0 {I|L}G{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.245 + + 33 NaN NaN 111130 NaN 21397 4701 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26101 101.83 NaN 46418 35 0 5598.1 0.262 + 12351 KNIIILILI 9 24 526.8739903464153 NaN 0 526.8741455078125 PEAK HCD FTMS 0 0 0 26099 4830.1005859375 0.2686821208688007 -3 0.0336151123046875 2 Unmodified _KNIIILILI_ REV__ENSG00000181017|ENST00000641377|OR56B2P;REV__nc|ENSG00000181017|Q8NGI1|OR56B2P 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87101.2 NaN 21398 4701 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26102 101.83 NaN 44833 35 0 4647.2 0.261 + -1 CCSSVCCSPC 10 37 545.660575890126 NaN 0 545.6609497070312 PEAK HCD FTMS 0 0 0 26099 4763.65771484375 0.11648561195437265 -15 0.20113372802734375 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))CCSSVCCSPC(Carbamidomethyl (C))_ REV__ENSG00000198271|ENST00000343246|KRTAP4-5;REV__KRTAP4-5|p.C96F|1|0.29|ENSG00000198271|chr17:41149481-41149481|C/A|missense_variant 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91790.9 NaN 21399 4701 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26104 101.83 NaN 254240 35 0 14854 0.327 + 14252 LCIFMFVLF 9 70 566.7983030222265 NaN 0 566.8093872070312 PEAK HCD FTMS 0 0 0 26103 13177.962890625 0.5495690555713256 -7 0.08506011962890625 1 Unmodified _LCIFMFVLF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF 14.581692164780916 0.22376707489839515 1 {I|L}{I|L}{M(Oxidation (M))|F}AV{I|L} 6 4 12.312 0 0 1.088 0 0 310.07987996404523 162.0560701959594 472.13595016000465 0 0 0 0 0 0.7742275032520141 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}AV{I|L} 1.088 - 88 + NaN NaN 125135.4 NaN 21400 4702 26103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26105 101.84 NaN 180690 35 0 50733 0.261 + 20302 NYPLLLLTL 9 41 530.3258219974583 1058.6370910617165 2 530.8279418945312 MULTI HCD FTMS 0 0 0 26103 25080.478515625 0.11064275304897299 -13 0.15537261962890625 2 Unmodified _NYPLLLLTL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 25.399314129420986 0.14091189997036632 1 {I|L}{I|L}[{I|L}T] 4 5 31.51 0 0 2.9765 0 0 600.3268931630822 0 600.3268931630822 0 27.557809497117844 0 0 0 1.5 0 0.7302046884880937 0 + {I|L}{I|L}[{I|L}T] 2.9765 + + 28 + NaN NaN 122394.1 NaN 21401 4702 26103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26107 101.84 NaN 372300 35 0 81842 0.327 -1 0 52 591.2782576656641 1180.5419623981281 2 591.2785034179688 MULTI HCD FTMS 0 0 0 26106 185581.890625 0.11658851131438261 -13 0.1524810791015625 1 NaN NaN 1 VYAD{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 7 -1 81.286 0 0 6.8855 0 0 0 412.1488036689334 412.1488036689334 56.06955398090193 0 0 0 0 2.274227503252014 2 0.3807196863200844 0 VYAD{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 6.8855 - 385 + NaN NaN 156211.6 NaN 21402 4703 26106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26108 101.85 NaN 95468 35 0 9990.9 0.261 + 33538 YIIKWLWD 8 35 568.8105998776218 1135.6066468220436 2 568.8106079101562 MULTI HCD FTMS 0 0 0 26106 30562.478515625 0.2907959846933568 6 -0.0634765625 2 Unmodified _YIIKWLWD_ REV__ENST00000367350.4_1_1:200583518-200584527:-|nuORF 9.347437153973935 0.5250182646323369 1 [Y{I|L}]{I|L}[{I|L}P]AW{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9 -1 + 55.849 0 0 4.918 4.918 91.121 0 0 0 19.990823894397565 55.848937180463665 19.990823894397565 55.848937180463665 0 1.9247425010840047 1.5228787452803376 0 0 [Y{I|L}]{I|L}[{I|L}P]AW{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4.918 - 55 NaN NaN 114212.9 NaN 21403 4703 26106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26110 101.85 NaN 352440 35 0 72681 0.327 + -1 PWAWDCSSGF 10 45 606.7427905510762 1211.4710281689522 2 606.742919921875 MULTI HCD FTMS 0 0 0 26109 122945.8203125 0.2143577412560056 -12 0.1395263671875 1 Carbamidomethyl (C) _PWAWDC(Carbamidomethyl (C))SSGF_ REV__ENST00000460945.5_1_9:32989779-33025045:-|nuORF;REV__ENST00000474658.6_1_9:32989779-33001570:-|nuORF 3.5964929083625545 0.45626689593999237 1 P 1 -1 5.4846 0 0 0.45272 0 0 275.96254040864795 835.4343355768186 1111.3968759854665 0 0 0 0 0 0 0 0 0 P 0.45272 + + 14 + NaN NaN 134047.8 NaN 21404 4704 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26111 101.86 NaN 141750 35 0 52990 0.263 + -1 LVLMLMLP 8 34 473.27736207569546 NaN 0 473.2777404785156 PEAK HCD FTMS 0 0 0 26109 22798.98828125 1 0 0 2 Oxidation (M) _LVLM(Oxidation (M))LMLP_ REV__WRN|p.R196Pfs*32|1|0.4|ENSG00000165392|chr8:31067115-31067115|G/-|frameshift_variant 6.354104778181461 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.74001 0 0 113.08369638093366 729.3643282525999 842.4480246335336 0 0 0 0 0 0 0 0 0 V 0.74001 + + 1 + NaN NaN 109701.6 NaN 21405 4704 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26113 101.86 NaN 1037400 35 0 231930 0.327 + 11404 IYPPLLGALSF 11 76 595.8447347971612 1189.6749166611223 2 595.8447875976562 MULTI HCD FTMS 0 0 0 26112 515250.375 0.8351628424529861 1 -0.012725830078125 1 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 131.26759243768294 0.007791960776918116 1 [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 98.096 0 0 8.2456 8.2456 90.787 0 0 0 5.013487579716781 5.013487579716781 5.013487579716781 8.565473235138128 0 3.385151878060192 1.5228787452803376 1.0044321917401078 0 + + [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}GAA[Y{I|L}];[Y{I|L}]PP{I|L}{I|L}QA[Y{I|L}] 8.2456;7.5256;5.386;4.4763 +;-;-;- + 680 + NaN NaN 239352.7 NaN 21406 4705 26112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26114 101.87 NaN 105420 35 0 23328 0.261 -1 FLCEAQGCGR 10 36 599.2606746499105 NaN 0 599.2598266601562 PEAK HCD FTMS 0 0 0 26112 33016.640625 0.2663661725114784 -9 0.10395050048828125 2 2 Carbamidomethyl (C) _FLC(Carbamidomethyl (C))EAQGC(Carbamidomethyl (C))GR_ ENSG00000119725|ENST00000555044|ZNF410;ENST00000412490.7_1_14:74358863-74376162:+|nuORF;ENST00000555620.1_1_14:74371659-74387846:+|nuORF;ENST00000557679.5_1_14:74371659-74389215:+|nuORF;nc|ENSG00000119725|Q86VK4-3|ZNF410;nc|ENSG00000119725|Q86VK4-4|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410;ZNF410-LIN52|1|fusion;ZNF410-LIN52|2|fusion;ZNF410-LIN52|3|fusion;ZNF410-LIN52|4|fusion 4.897010918128616 0.3359931263921593 1 G 1 -1 6.9897 0 0 0.58418 0 0 278.1638088635635 858.2979220025999 1136.4617308661634 0 0 0 0 0 0 0 0 0 G 0.58418 + + 2 + NaN NaN 97974.3 NaN 21407 4705 26112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26115 101.87 NaN 60473 35 0 6100.1 0.261 + -1 NNSSMEACH 9 53 533.1907479356386 NaN 0 533.3074951171875 PEAK HCD FTMS 0 0 0 26112 11134.3212890625 0.5847472726261914 -1 0.0094757080078125 3 Carbamidomethyl (C),Oxidation (M) _NNSSM(Oxidation (M))EAC(Carbamidomethyl (C))H_ REV__ENSG00000134193|ENST00000256585|REG4 0.45834013312273997 0.29302578994899664 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 13.271 0 0 1.2469 0 0 481.06672428748954 286.14072595767817 767.2074502451677 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.2469 - 5 + NaN NaN 102211.4 NaN 21408 4705 26112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26117 101.87 NaN 105920 35 0 8501.6 0.327 + 33691 YKREEGYIL 9 44 585.8133405896667 NaN 0 585.8128662109375 PEAK HCD FTMS 0 0 0 26116 41301.4140625 0.6158068372906359 9 -0.12042236328125 1 Unmodified _YKREEGYIL_ ENSG00000164061|ENST00000296452|BSN 12.240655878213236 0.2359303321180293 1 {I|L}{M(Oxidation (M))|F} 2 8 15.217 0 0 1.301 0 0 131.09387854565858 775.3457125299436 906.4395910756023 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.301 - 10 + NaN NaN 120727.6 NaN 21409 4706 26116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26118 101.88 NaN 49854 35 0 6837.5 0.261 + 12081 KKEYSLDFF 9 28 588.8003981237613 1175.5862433143225 2 588.8019409179688 MULTI HCD FTMS 0 0 0 26116 10205.564453125 0.157133257327564 -10 0.11667633056640625 2 Unmodified _KKEYSLDFF_ tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1 2.0597508629832335 0.3354026079994024 1 {I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}] 3 7 10.458 0 0 0.88956 0 0 737.4142933576187 0 737.4142933576187 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}] 0.88956 - 1 NaN NaN 93828.4 NaN 21410 4706 26116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26120 101.88 NaN 253530 35 0 85161 0.327 + 28466 TPLVFTLVI 9 37 501.81533803195805 1001.6161231307161 2 501.8153991699219 MULTI HCD FTMS 0 0 0 26119 228520.859375 0.11915288435436666 27 -0.3878173828125 1 Unmodified _TPLVFTLVI_ REV__ENSG00000136271|ENST00000258772|DDX56;REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF;REV__ENST00000421223.5_1_7:44605603-44609680:-|nuORF;REV__ENST00000446987.5_1_7:44605603-44612175:-|nuORF;REV__nc|ENSG00000136271|Q9NY93-2|DDX56 26.88365393820708 0.12808753336095696 1 MT{I|L}V{I|L} 5 -1 50.701 0 0 5.0619 0 0 426.28477675605626 0 426.28477675605626 0 50.70107520596089 0 0 0 1 0 0.4247425010840047 0 MT{I|L}V{I|L} 5.0619 - 25 NaN NaN 124698.5 NaN 21411 4707 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26121 101.89 NaN 49363 35 0 5796.6 0.261 + -1 YEKGKWTCPC 10 31 636.2783203125 NaN 0 636.2783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _YEKGKWTC(Carbamidomethyl (C))PC_ REV__ENSG00000188162|ENST00000399397|OTOG;REV__nc|ENSG00000188162|Q6ZRI0|OTOG 1.4819007175156935 0.33891598740166873 1 {I|L} 1 -1 6.9897 0 0 0.55014 0 0 166.08197255124998 988.3475435846311 1154.4295161358812 0 0 0 0 0 0 0 0 0 {I|L} 0.55014 - 1 + NaN NaN 99112.5 NaN 21412 4707 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26123 101.89 NaN 183630 35 0 29966 0.326 + 32158 VYSPFVLLNTL 11 41 633.360724491628 1264.706896050056 2 633.8621215820312 MULTI HCD FTMS 0 0 0 26122 33541.796875 0.1658561765205585 11 -0.16323089599609375 1 Unmodified _VYSPFVLLNTL_ ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-2|ZMYM3 27.088373467376528 0.22106052561220446 1 V{I|L}{I|L} 3 8 31.209 0 0 2.4677 0 0 593.2843019111873 343.16172205142817 936.4460239626155 0 0 0 0 0 1.7396518287104437 0 0 0 + V{I|L}{I|L} 2.4677 + + 31 + NaN NaN 107622.6 NaN 21413 4708 26122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26124 101.9 NaN 96417 35 0 14595 0.261 + 3415 EFDFGLAVEF 10 34 587.2766961646406 1172.5388393960811 2 587.277099609375 MULTI HCD FTMS 0 0 0 26122 15183.3408203125 0.1458773499705088 -8 0.08080291748046875 2 Unmodified _EFDFGLAVEF_ ENSG00000267221|ENST00000587304|C17orf113 8.745405648335112 0.42901288225909884 1 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 6 41.938 0 0 3.5767 0 0 632.2786134250039 0 632.2786134250039 0 41.938200260161125 0 0 0 1 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.5767 - 21 NaN NaN 99936.1 NaN 21414 4708 26122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26125 101.9 NaN 55717 35 0 5941 0.261 + -1 CEGDMCICC 9 41 545.660575890126 NaN 0 545.6599731445312 PEAK HCD FTMS 0 0 0 26122 5849.287109375 0.1430324824366016 -8 0.08080291748046875 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))EGDMC(Carbamidomethyl (C))ICC_ REV__ENSG00000100425|ENST00000404760|BRD1;REV__nc|ENSG00000100425|O95696|BRD1 0 0.29524684227089293 1 S 1 -1 1.9897 0 0 0.18266 0 0 473.92154132927686 525.3274019830686 999.2489433123455 0 0 0 0 0 0 0 0 0 S 0.18266 - 1 + NaN NaN 96545.4 NaN 21415 4708 26122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26127 101.91 NaN 3723000 35 0 1210800 0.327 + 31354 VYADGIFDLF 10 58 580.2871575338445 1158.559762134489 2 580.2875366210938 MULTI HCD FTMS 0 0 0 26126 1814326.5 0.3352859516997916 -6 0.0634765625 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 152.41221235671458 1.4491950712217411E-07 1 [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 0 + 116.69 0 0 10.072 10.072 91.321 0 0 0 0.7390874094431865 0.7390874094431865 0.7390874094431865 5.039237471316298 0 3.8494850021680094 1.3010299956639813 1.579689690656103 0 + + [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADAV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AVAD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]AV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YN]{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SVG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[SG]V{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YQ]V{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10.072;9.6368;8.7781;8.6856;8.5986;8.3432;7.7827;7.6993;7.6518;7.3478 +;-;-;-;-;-;-;-;-;- + 1446 NaN NaN 641285.1 NaN 21416 4709 26126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26128 101.91 NaN 222570 35 0 44737 0.261 + 19800 NYAWVYYHL 9 53 614.7934619760986 1227.572371018997 2 614.7932739257812 MULTI HCD FTMS 0 0 0 26126 31815.7265625 0.4603530613199986 15 -0.235748291015625 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.04802738721622131 1 [YN]AWVYYH{I|L} 9 0 + 70.824 0 0 5.7695 5.7695 92.926 0 0 0 15.066753121453402 63.83471251333795 15.066753121453402 70.82441255669814 0 1.9247425010840047 1.6989700043360187 0 0.3494850021680094 + + [YN]AWVYYH{I|L} 5.7695 + + 131 NaN NaN 125375.4 NaN 21417 4709 26126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26130 101.92 NaN 95823 35 0 8695.7 0.327 + 29610 VAPIIFLTI 9 39 493.8177999046536 985.6210468761072 2 493.8182373046875 MULTI HCD FTMS 0 0 0 26129 21152.884765625 0.11204453767157584 18 -0.26519775390625 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.2910521888787154 1 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4786854474625 0 753.4786854474625 0 19.68256871239447 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 18 NaN NaN 110184.2 NaN 21418 4710 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26131 101.92 NaN 88075 35 0 14561 0.261 -1 QLTVIPEMSI 10 38 573.806262637869 NaN 0 573.8070678710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _QLTVIPEM(Oxidation (M))SI_ ENST00000529498.1_1_11:124545562-124545739:+|nuORF 10.150570793230772 0.3314968072639206 1 S 1 -1 11.99 0 0 1.0466 0 0 131.09927272102385 924.4463046546346 1055.5455773756585 0 0 0 0 0 0.5 0 0 0 S 1.0466 + + 8 + NaN NaN 89300.9 NaN 21419 4710 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26132 101.92 NaN 38895 35 0 7497.8 0.261 + -1 VLRERPHLRG 10 26 637.8744506835938 NaN 0 637.8744506835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VLRERPHLRG_ REV__ENST00000359518.7_1_11:6486953-6494439:-|nuORF 0.45834013312273997 0.33979201340002624 1 V 1 -1 6.9897 0 0 0.54919 0 0 131.09106570465934 1039.5477547857697 1170.638820490429 0 0 0 0 0 0 0 0 0 V 0.54919 + + 1 + NaN NaN 90141.2 NaN 21420 4710 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26133 101.93 NaN 97072 35 0 17778 0.264 + 22586 QTELILLL 8 39 471.79578788905116 NaN 0 471.79608154296875 PEAK HCD FTMS 0 0 0 26129 20977.771484375 0.822703074924475 15 -0.23320770263671875 4 Unmodified _QTELILLL_ nc|ENSG00000204296|Q5SRN2|TSBP1 6.354104778181461 0.38822285293237185 1 D 1 8 5.4846 0 0 0.58249 0 0 372.2439672802523 451.2888277643188 823.5327950445711 0 0 0 0 0 0 0 0 0 D 0.58249 - 3 + NaN NaN 115912.4 NaN 21421 4710 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26135 101.93 NaN 673030 35 0 175480 0.327 + 18657 MYIIPVVLF 9 39 555.816937085154 1109.619321237108 2 555.8170166015625 MULTI HCD FTMS 0 0 0 26134 355201.5 0.5176125223230387 14 -0.2171173095703125 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 49.526 0 0 4.4633 0 0 423.1788437974579 0 423.1788437974579 0 48.4163750790475 0 0 0 2.3494850021680094 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.4633 + + 39 + NaN NaN 186099.1 NaN 21422 4711 26134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26136 101.94 NaN 127030 35 0 30532 0.261 + 32709 WPLPPDWPLP 10 35 609.3211448624703 1216.6277367917405 2 609.3209838867188 MULTI HCD FTMS 0 0 0 26134 69328.40625 0.5482989886847217 14 -0.2171173095703125 2 Unmodified _WPLPPDWPLP_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 5.731851221503515 0.44496410492002586 1 WP{I|L}P 4 6 30.433 0 0 2.5014 0 0 705.34868056465 0 705.34868056465 0 24.948500216800937 0 0 0 0 0 0 0 + WP{I|L}P 2.5014 + + 9 NaN NaN 121392.5 NaN 21423 4711 26134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26137 101.94 NaN 25832 35 0 2718.2 0.261 -1 0 25 638.9651489257812 NaN 0 638.9651489257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 1 S 1 -1 6.9897 0 0 0.54782 0 0 164.4276842755874 1021.42829309635 1185.8559773719373 0 0 0 0 0 0 0 0 0 S 0.54782 - 1 + NaN NaN 90963.3 NaN 21424 4711 26134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26139 101.95 NaN 127800 35 0 29504 0.327 -1 0 44 435.22224084189867 434.2149643752987 1 435.2224426269531 MULTI HCD FTMS 0 0 0 26138 93801.4296875 0.6177053243140181 7 -0.11176300048828125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99666.1 NaN 21425 4712 26138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26140 101.95 NaN 163000 35 0 21888 0.261 -1 DYMNLLGMIF 10 40 624.7856756183925 1247.5567983035849 2 624.7857666015625 MULTI HCD FTMS 0 0 0 26138 78389.0234375 0.5618402553720843 15 -0.22696685791015625 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 24.990960013464015 0.27735500881591096 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 37.218 0 0 2.9833 0 0 652.2516174922467 0 652.2516174922467 0 37.21848749616356 0 0 0 1.5 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.9833 + + 18 NaN NaN 117094.5 NaN 21426 4712 26138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26141 101.95 NaN 120370 35 0 11778 0.261 + 13757 KYPSPFFVF 9 39 566.2977416691025 1130.580930405005 2 566.29736328125 MULTI HCD FTMS 0 0 0 26138 13243.74609375 0.26374471396051186 45 -0.6415328979492188 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 1 W[NP]V{M(Oxidation (M))|F} 5 6 31.07 0 0 2.7481 0 0 469.26036269355626 0 469.26036269355626 0 19.387568628841265 0 0 0 1.4247425010840047 0 0 0 W[NP]V{M(Oxidation (M))|F} 2.7481 - 22 NaN NaN 97924.7 NaN 21427 4712 26138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26142 101.96 NaN 44094 35 0 5318.8 0.261 -1 0 29 620.4218771238934 619.4146006572934 1 621.3161010742188 MULTI HCD FTMS 0 0 0 26138 26663.533203125 0.5586253141511374 -4 0.0514678955078125 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100294.4 NaN 21428 4712 26138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26144 101.96 NaN 192690 35 0 19640 0.411 -1 FWGFCSDFF 9 57 404.83072169195054 1211.4703356760517 3 404.8305969238281 MULTI HCD FTMS 0 0 0 26143 29168.23828125 0.5471593189816292 -3 0.04526519775390625 1 Carbamidomethyl (C) _FWGFC(Carbamidomethyl (C))SDFF_ ENST00000370152.7_1_1:100525525-100527483:+|nuORF 5.296884461304476 0.3108627248283497 1 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2782 0 0 1046.3914762783938 0 1046.3914762783938 0 -0.9691001300805624 -0.9691001300805624 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2782 + + 22 + NaN NaN 139752.9 NaN 21429 4713 26143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26146 101.97 NaN 1299600 35 0 288890 0.327 -1 0 72 591.2782576656641 1180.5419623981281 2 591.2784423828125 MULTI HCD FTMS 0 0 0 26145 765374.75 0.48083302955690943 -2 0.023895263671875 1 NaN NaN 1 VYADG{I|L}{M(Oxidation (M))|F}D 8 -1 106.48 0 0 9.0198 0 0 0 297.12241541080317 297.12241541080317 52.99447076056806 0 0 0 0 2.5994850021680094 2 1.0501648626366045 0 VYADG{I|L}{M(Oxidation (M))|F}D 9.0198 - 3568 + NaN NaN 291707.5 NaN 21430 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26147 101.97 NaN 176280 35 0 58675 0.261 -1 0 40 530.3258782808945 529.3186018142944 1 530.3258666992188 MULTI HCD FTMS 0 0 0 26145 81984.65625 0.6183378800122229 1 -0.0260009765625 2 NaN NaN 1 [{I|L}T]{I|L} 3 -1 21.963 0 0 4.1492 0 0 0 199.0797767012663 199.0797767012663 11.505149978319904 0 0 0 0 0 1.3010299956639813 0 0 [{I|L}T]{I|L} 4.1492 - 13 NaN NaN 119104.5 NaN 21431 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26148 101.98 NaN 210740 35 0 34041 0.261 + 34506 YPFLLVGDLM 10 49 584.3095259951273 1166.6044990570545 2 584.3096923828125 MULTI HCD FTMS 0 0 0 26145 62560.62890625 0.3626130958321613 -3 0.036865234375 3 Unmodified _YPFLLVGDLM_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 37.97399986684836 0.1629881689457739 1 {I|L}V[DG]{I|L}M 6 4 39.169 0 0 3.3575 0 0 520.2696400373062 0 520.2696400373062 0 28.19984993812689 0 0 0 1.4247425010840047 0 0 0 + {I|L}V[DG]{I|L}M 3.3575 + + 69 NaN NaN 110968.9 NaN 21432 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26149 101.98 NaN 90668 35 0 8515 0.261 + 11197 IYIYPDKL 8 35 512.7898654595717 NaN 0 512.806640625 PEAK HCD FTMS 0 0 0 26145 6161.1357421875 0.3685125266746518 -1 0.0076904296875 4 Unmodified _IYIYPDKL_ ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3 7.910154910731844 0.38822285293237185 1 P{I|L} 2 6 10.969 0 0 1.0717 0 0 147.0358938117526 663.3692110650999 810.4051048768524 0 0 0 0 0 0 0 0 0 P{I|L} 1.0717 - 6 + NaN NaN 106379.5 NaN 21433 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26150 101.98 NaN 147730 35 0 11346 0.261 + 29476 TYVFLMVLF 9 59 566.8091926890461 1131.603832444892 2 567.3110961914062 MULTI HCD FTMS 0 0 0 26145 12831.5908203125 0.2713386466320184 10 -0.17317962646484375 5 Unmodified _TYVFLMVLF_ ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1 16.942295170755138 0.21397866736869717 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F} 9 4 [Y{M(Oxidation (M))|F}] + + 38.408 3.7236 1.2008 3.3941 3.3941 59.529 0 0 0 0 17.439192491441844 0 0 0 2.441962823435958 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F} 3.3941 - 182 + NaN NaN 114001.9 NaN 21434 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26151 101.99 NaN 25879 35 0 3993.3 0.261 + 34969 YSQRPWKQ 8 21 546.7839057939872 1091.5532586547743 2 546.772216796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YSQRPWKQ_ ENST00000552189.5_1_12:48438897-48439101:-|nuORF 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82935.6 NaN 21435 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26152 101.99 NaN 1161700 35 0 340380 0.263 + 26394 SSSTSSPF 8 62 400.17755126953125 NaN 0 400.17755126953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SSSTSSPF_ REV__ENSG00000155495|ENST00000285879|MAGEC1;REV__ENSG00000155495|ENST00000285879|MAGEC1;REV__MAGEC1|p.V831E|1|0.41|ENSG00000155495|chrX:141907896-141907896|T/A|missense_variant 5.760428011301431 0.38822285293237185 1 V 1 -1 6.9897 0 0 0.87626 0 0 563.5344331525407 132.04543481998283 695.5798679725235 0 0 0 0 0 0 0 0 0 V 0.87626 - 13 + NaN NaN 260495.2 NaN 21436 4714 26145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26154 102 NaN 716030 35 0 232210 0.327 -1 0 59 606.7427905510762 1211.4710281689522 2 606.7431030273438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 -1 34.412 0 0 2.8406 0 0 671.2149756868646 0 671.2149756868646 0 26.448565749036064 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 2.8406 - 77 NaN NaN 207287 NaN 21437 4715 26153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26155 102 NaN 213470 35 0 45431 0.261 + 19803 NYAWVYYHL 9 48 614.7931667862938 NaN 0 614.7933349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 45.69961567697781 0.05999643521280087 1 {M(Oxidation (M))|F}AWVY 5 5 30.952 0 0 2.5214 0 0 130.0502485122375 428.1932772272094 558.2435257394469 0 0 0 0 0 1.2614393726401687 0 0 0 {M(Oxidation (M))|F}AWVY 2.5214 - 69 + NaN NaN 116791 NaN 21438 4715 26153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26156 102 NaN 52513 35 0 5459.9 0.261 -1 AHHCCCCPC 9 39 545.660575890126 NaN 0 545.6600341796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _AHHCC(Carbamidomethyl (C))C(Carbamidomethyl (C))CPC_ ENSG00000197191|ENST00000650725|CYSRT1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94529.1 NaN 21439 4715 26153 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26159 102.01 NaN 311670 35 0 99827 0.327 + 28467 TPLVFTLVI 9 42 501.81538063213236 1001.6162083310647 2 501.8155517578125 MULTI HCD FTMS 0 0 0 26158 1242648.25 0.6897053020215806 1 -0.0322265625 1 Unmodified _TPLVFTLVI_ REV__ENSG00000136271|ENST00000258772|DDX56;REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF;REV__ENST00000421223.5_1_7:44605603-44609680:-|nuORF;REV__ENST00000446987.5_1_7:44605603-44612175:-|nuORF;REV__nc|ENSG00000136271|Q9NY93-2|DDX56 34.10243960390752 0.09241788333544565 1 MT{I|L}V{I|L} 5 -1 54.508 0 0 5.442 0 0 426.2826405255875 0 426.2826405255875 0 54.508272069161734 0 0 0 1.4247425010840047 0 0.3807196863200844 0 MT{I|L}V{I|L} 5.442 - 32 NaN NaN 121814 NaN 21440 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26160 102.02 NaN 213310 35 0 51459 0.261 + 27287 SYQFILNLF 9 38 572.8055473066048 1143.5965416800095 2 572.8060913085938 MULTI HCD FTMS 0 0 0 26158 325061.46875 0.18820602361061284 -13 0.1626739501953125 2 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 40.23920728925047 0.06424668180817725 1 {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5 4 55.261 0 0 4.8322 0 0 525.2225208966812 0 525.2225208966812 0 33.55388478663194 0 0 0 1.8807196863200843 0 0 0 + {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 4.8322 + + 99 NaN NaN 115799.7 NaN 21441 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26161 102.02 NaN 495010 35 0 100330 0.261 + 11405 IYPPLLGALSF 11 71 595.8447347971612 1189.6749166611223 2 595.8447265625 MULTI HCD FTMS 0 0 0 26158 283307.34375 0.4592093047851838 12 -0.1855316162109375 3 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 88.95385435242217 0.007759427153300959 1 [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 80.622 0 0 6.7768 6.7768 87.954 0 0 0 59.652826269871156 16.61501066309424 16.61501066309424 7.812898245978175 0 2.8667053245199625 1.5228787452803376 0.6505149978319906 0 + + [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F} 6.7768;6.1201 +;- + 324 + NaN NaN 164438.8 NaN 21442 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26162 102.03 NaN 230790 35 0 50713 0.261 + 33036 YCLFLLNLF 9 39 573.3066234863264 1144.5986940394528 2 573.3079223632812 MULTI HCD FTMS 0 0 0 26158 277914.0625 1 0 0 4 Unmodified _YCLFLLNLF_ REV__ENSG00000121775|ENST00000336294|TMEM39B;REV__ENST00000468135.5_1_1:32542241-32568271:+|nuORF;REV__ENST00000476968.5_1_1:32540652-32561345:+|nuORF;REV__nc|ENSG00000121775|Q9GZU3-3|TMEM39B 15.847184025352803 0.2234401846867398 1 {I|L}N{I|L}{I|L}[C(Carbamidomethyl (C))S]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 -1 26.643 0 0 2.3277 0 0 166.08251555717044 0 166.08251555717044 0 0.7010752059608905 0 0 0 0 0 0.4247425010840047 0 {I|L}N{I|L}{I|L}[C(Carbamidomethyl (C))S]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.3277 - 58 + NaN NaN 132889.6 NaN 21443 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26163 102.03 NaN 330340 35 0 47980 0.261 + 30032 VFQAGLVNLLF 11 58 610.8554902706207 1219.6964276080414 2 610.8555297851562 MULTI HCD FTMS 0 0 0 26158 86845.609375 0.6068305736489629 -1 0.0072021484375 5 Unmodified _VFQAGLVNLLF_ ENSG00000149483|ENST00000278826|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138 45.739877483867886 0.09998344372470726 1 V{M(Oxidation (M))|F}QN{I|L}{I|L}{M(Oxidation (M))|F} 7 4 51.006 0 0 4.1818 0 0 340.2103443830094 0 340.2103443830094 0 37.46661994673893 0 0 0 1.1237125054200234 0 0 0.3807196863200844 V{M(Oxidation (M))|F}QN{I|L}{I|L}{M(Oxidation (M))|F} 4.1818 - 194 NaN NaN 139600.9 NaN 21444 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26164 102.03 NaN 135420 35 0 8417 0.264 + 31507 VYGELCNECW 10 46 405.83243833472636 1214.4754856043792 3 405.83367919921875 MULTI HCD FTMS 0 0 0 26158 85393.46875 0.8610414410249975 1 -0.0322265625 6 Unmodified _VYGELCNECW_ REV__ENSG00000106780|ENST00000373930|MEGF9 5.783430956126388 0.4446910851847804 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1383 0 0 936.3137406342901 0 936.3137406342901 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.1383 - 11 NaN NaN 108583.8 NaN 21445 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26165 102.04 NaN 165230 35 0 21282 0.261 -1 0 36 505.08685149415544 NaN 0 504.8092956542969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 1 P 1 -1 6.9897 0 0 0.69331 0 0 113.64093749190518 794.4456881158811 908.0866256077863 0 0 0 0 0 0 0 0 0 P 0.69331 - 1 + NaN NaN 121963.9 NaN 21446 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26166 102.04 NaN 78028 35 0 7332.4 0.261 + 28204 TKTDKTLVL 9 42 509.812750522657 1017.610948112114 2 509.81268310546875 MULTI HCD FTMS 0 0 0 26158 63096.9453125 1 0 0 8 Unmodified _TKTDKTLVL_ ENSG00000108518|ENST00000225655|PFN1 8.155526934196011 0.2891920862272901 1 V{I|L} 2 7 24.464 0 0 2.4041 0 0 787.45219618965 0 787.45219618965 0 11.699740308471753 0 0 0 0.5 0 0 0 + V{I|L} 2.4041 + + 20 NaN NaN 108663.4 NaN 21447 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26167 102.04 NaN 86930 35 0 4976.2 0.261 -1 VFSAHVPR 8 45 477.7613350614631 NaN 0 477.7611083984375 PEAK HCD FTMS 0 0 0 26158 50117.703125 1 0 0 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VFSAHVPR_ ENST00000474863.5_1_1:222885078-222885144:-|nuORF 2.8892196856762586 0.38822285293237185 1 E 1 -1 3.9794 0 0 0.41734 0 0 495.2842210588815 326.15036951236567 821.4345905712471 0 0 0 0 0 0 0 0 0 E 0.41734 - 7 + NaN NaN 98432.2 NaN 21448 4717 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26169 102.05 NaN 4957200 35 0 1669100 0.327 + 31355 VYADGIFDLF 10 48 580.2871575338445 1158.559762134489 2 580.2875366210938 MULTI HCD FTMS 0 0 0 26168 3385385.5 0.6256162819857257 2 -0.03224945068359375 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 139.13845188893973 1.4742728145756104E-06 1 [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 0 + 113.59 0 0 9.8048 9.8048 95.89 0 0 0 1.7474250108400469 1.7474250108400469 1.7474250108400469 14.796962438796157 0 3.5994850021680094 1.3979400086720375 0.8494850021680094 0 + + [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AVAD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YN]{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F};[YV][Q{I|L}]D{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADG{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]AP{M(Oxidation (M))|F};[YV]AVAD{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 9.8048;8.5277;8.4495;8.2699;7.4541;6.9174;6.8453;6.7188;6.2678;5.5924 +;-;-;-;-;-;-;-;-;- + 742 + NaN NaN 371851.7 NaN 21449 4718 26168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26170 102.05 NaN 130180 35 0 24521 0.261 + 2153 DGYSIPFEVF 10 35 587.2766961646406 1172.5388393960811 2 587.276123046875 MULTI HCD FTMS 0 0 0 26168 68290.0625 0.6561120813077673 1 -0.00959014892578125 2 Unmodified _DGYSIPFEVF_ tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 13.042465956692817 0.38911719078024076 1 A{[RE]|[WV]}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 7 8 43.588 0 0 3.7174 0 0 276.11168105293126 0 276.11168105293126 0 43.588126006703476 0 0 0 1.4247425010840047 0 0 0 A{[RE]|[WV]}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.7174 - 20 NaN NaN 111220.7 NaN 21450 4718 26168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26172 102.06 NaN 318840 35 0 65812 0.327 -1 MYIIPVVLF 9 54 555.816937085154 1109.619321237108 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26171 119132.4609375 0.1736041474949015 21 -0.29721832275390625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 1 V{I|L}{M(Oxidation (M))|F} 3 -1 37.747 0 0 3.4018 0 0 732.3868870997967 0 732.3868870997967 0 31.515274773069457 0 0 0 1.305462187404089 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.4018 + + 284 NaN NaN 152265.9 NaN 21451 4719 26171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26173 102.06 NaN 139630 35 0 21014 0.261 + 2180 DIFDAAFDFL 10 26 587.2766961646406 1172.5388393960811 2 587.77880859375 MULTI HCD FTMS 0 0 0 26171 31261.138671875 0.42308785640777735 1 -0.0226593017578125 2 Unmodified _DIFDAAFDFL_ REV__ENSG00000164175|ENST00000296589|SLC45A2;REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2;REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 17.11289562659939 0.35104376501799556 1 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.5767 0 0 632.2811700368493 0 632.2811700368493 0 41.938200260161125 0 0 0 1 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.5767 - 12 NaN NaN 117069 NaN 21452 4719 26171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26174 102.06 NaN 106820 35 0 9602.1 0.262 + 14487 LFALIVPTL 9 43 493.8179197125232 985.6212864918464 2 493.81781005859375 MULTI HCD FTMS 0 0 0 26171 29165.064453125 0.07924653316288732 3 -0.03974151611328125 3 Unmodified _LFALIVPTL_ REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant 18.13498045792455 0.20367413111508956 1 T{I|L} 2 -1 30.217 0 0 3.0657 0 0 753.4780384724847 0 753.4780384724847 0 23.56106265242992 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 3.0657 + + 26 NaN NaN 113042 NaN 21453 4719 26171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26175 102.07 NaN 70021 35 0 13640 0.261 -1 KKMGQNLARVL 11 35 637.3742065429688 NaN 0 637.3742065429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _KKM(Oxidation (M))GQNLARVL_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 5.296884461304476 0.3270944076746277 1 V 1 -1 10.797 0 0 0.84832 0 0 131.09745849143138 1039.5485976745945 1170.6460561660258 0 0 0 0 0 0.3807196863200844 0 0 0 V 0.84832 + + 2 + NaN NaN 102023.1 NaN 21454 4719 26171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26176 102.07 NaN 59482 35 0 5048.2 0.264 + 23824 RRRRRRCRRS 10 31 486.6273427953711 1456.8601989863132 3 486.6276550292969 MULTI HCD FTMS 0 0 0 26171 17983.837890625 0.10125116440117385 -18 0.23630523681640625 5 Unmodified _RRRRRRCRRS_ REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF 0.13989180515190558 0.47456323509232307 1 Q 1 -1 1.9897 0 0 0.13657 0 0 860.5081614880695 465.2727144830688 1325.7808759711384 0 0 0 0 0 0 0 0 0 Q 0.13657 - 2 + NaN NaN 87153.7 NaN 21455 4719 26171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26177 102.07 NaN 26863 35 0 3402.2 0.261 + 30079 VFTLLMAIYVP 11 19 633.8624877929688 NaN 0 633.8624877929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VFTLLMAIYVP_ ENSG00000101438|ENST00000217420|SLC32A1 3.5964929083625545 0.33191792882328314 1 {I|L}{I|L} 2 9 20.969 0 0 1.658 0 0 346.1923301740249 689.3284581178908 1035.5207882919158 0 0 0 0 0 1 0 0 0 + {I|L}{I|L} 1.658 + + 4 + NaN NaN 93400.7 NaN 21456 4719 26171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26179 102.08 NaN 129620 35 0 33330 0.327 + 16503 LTEKSWLWHC 10 48 434.88223622800285 NaN 0 434.88214111328125 PEAK HCD FTMS 0 0 0 26178 77008.1328125 0.750712877242695 -66 0.980682373046875 1 Unmodified _LTEKSWLWHC_ ENST00000577083.1_1_16:4491378-4492529:+|nuORF 0.6268255596534771 0.33964781322640114 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105600.8 NaN 21457 4720 26178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26180 102.08 NaN 71343 35 0 6787 0.261 + 30337 VLEAKRRHRHR 11 36 486.6273427953711 1456.8601989863132 3 486.962158203125 MULTI HCD FTMS 0 0 0 26178 11091.587890625 0.060863649053179994 -10 0.163482666015625 2 Unmodified _VLEAKRRHRHR_ REV__ENSG00000183856|ENST00000361170|IQGAP3 0.09484139111097674 0.41850472438158626 1 E 1 -1 3.0989 0 0 0.21271 0 0 998.5866832165851 326.21564661197505 1324.8023298285602 0 0 0 0 0 0 0 0 0 E 0.21271 + + 5 + NaN NaN 94489.9 NaN 21458 4720 26178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26182 102.09 NaN 59675 35 0 5773.8 0.411 + -1 CMTLFRAR 8 48 507.2564155988464 NaN 0 507.71954345703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _CM(Oxidation (M))TLFRAR_ REV__ENSG00000185104|ENST00000396153|FAF1;REV__nc|ENSG00000185104|Q9UNN5-2|FAF1;REV__SPATA6-FAF1|1|fusion 2.577480529830294 0.38822285293237185 1 A 1 -1 5.4846 0 0 0.54168 0 0 791.5442815377335 146.88965784244377 938.4339393801772 0 0 0 0 0 0 0 0 0 A 0.54168 + + 3 + NaN NaN 101203.4 NaN 21459 4721 26181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26184 102.1 NaN 528810 35 0 124570 0.327 -1 0 51 591.2782576656641 1180.5419623981281 2 591.2783203125 MULTI HCD FTMS 0 0 0 26183 600789.6875 0.3774354008505949 6 -0.08463287353515625 1 NaN NaN 1 VYADG{I|L}{M(Oxidation (M))|F} 7 -1 94.016 0 0 7.9638 0 0 0 412.14883287884635 412.14883287884635 52.34591650641846 0 0 0 0 2.274227503252014 2 0.3807196863200844 0 VYADG{I|L}{M(Oxidation (M))|F} 7.9638 - 739 + NaN NaN 173137.4 NaN 21460 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26185 102.1 NaN 398680 35 0 48702 0.261 + 22058 QGQPDIYKAF 10 65 583.7962197690985 1165.5778866049968 2 584.3098754882812 MULTI HCD FTMS 0 0 0 26183 13301.8076171875 0.09583262273509123 -7 0.1016082763671875 2 Unmodified _QGQPDIYKAF_ ENSG00000169375|ENST00000394947|SIN3A 20.41453444215458 0.3201613495159799 1 {I|L}{I|L}{M(Oxidation (M))|F}Q[MT] 6 9 39.799 0 0 3.4145 0 0 414.1873491753604 0 414.1873491753604 0 8.295671638727029 0 0 0 1.916386562212267 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}Q[MT] 3.4145 - 334 NaN NaN 146758 NaN 21461 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26186 102.1 NaN 298930 35 0 70332 0.261 + 16887 LYFLFAPTL 9 43 542.807486965137 1083.6004209970738 2 542.8077392578125 MULTI HCD FTMS 0 0 0 26183 72383.484375 0.21909259947302867 -8 0.1276092529296875 3 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 30.224811164608877 0.11021837014094292 1 AP[{I|L}T] 4 5 23.474 0 0 2.1663 0 0 683.3685625537349 0 683.3685625537349 0 8.870090806403468 0 0 0 1 0 0.6307196863200843 0 + AP[{I|L}T] 2.1663 + + 29 + NaN NaN 134834.1 NaN 21462 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26187 102.11 NaN 123780 35 0 16430 0.261 + 2367 DPENFPFVVL 10 39 588.8003981237613 1175.5862433143225 2 588.8009033203125 MULTI HCD FTMS 0 0 0 26183 20932.798828125 0.32229857348445956 3 -0.052642822265625 4 Unmodified _DPENFPFVVL_ ENSG00000075785|ENST00000265062|RAB7A 4.897010918128616 0.4493830473644964 1 V{I|L} 2 8 20.969 0 0 1.7837 0 0 945.4210800336368 0 945.4210800336368 0 19.375306316958497 0 0 0 0 0 0 0 + V{I|L} 1.7837 + + 2 NaN NaN 118717 NaN 21463 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26188 102.11 NaN 54386 35 0 7547.7 0.261 -1 DYMNLLGMIF 10 26 624.7856756183925 1247.5567983035849 2 624.7858276367188 MULTI HCD FTMS 0 0 0 26183 70137.4921875 0.502698780948601 24 -0.32753753662109375 5 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.3684828712757339 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 36.466 0 0 2.923 0 0 652.2534421241297 0 652.2534421241297 0 36.46591250700361 0 0 0 1.4247425010840047 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.923 + + 7 NaN NaN 96213.2 NaN 21464 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26189 102.11 NaN 134510 35 0 13710 0.261 + 34037 YNAALTYMPSV 11 40 615.2950037311639 1228.5754545291277 2 615.293701171875 MULTI HCD FTMS 0 0 0 26183 28568.90625 0.4672992022425332 4 -0.06844329833984375 6 Unmodified _YNAALTYMPSV_ ENSG00000122591|ENST00000432176|HYCC1;nc|ENSG00000122591|Q9BYI3-3|HYCC1 2.9952420565917617 0.40578455234410343 1 [YN]A[{M(Oxidation (M))|F}V]VWAN 9 8 42.598 0 0 3.4672 0 0 0 161.05870583211518 161.05870583211518 38.61818737241734 0 0 0 0 0 1.6989700043360187 0 0 [YN]A[{M(Oxidation (M))|F}V]VWAN 3.4672 - 142 NaN NaN 108762.3 NaN 21465 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26190 102.12 NaN 97935 35 0 12219 0.261 + 13758 KYPSPFFVF 9 45 566.297247495986 1130.5799420587718 2 566.2969360351562 MULTI HCD FTMS 0 0 0 26183 30547.87109375 0.634241775300008 2 -0.04557037353515625 7 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.90604991867851 0.24021115267848145 1 V{M(Oxidation (M))|F} 2 7 29.464 0 0 2.6061 0 0 866.4317249772085 0 866.4317249772085 0 7.64136888583522 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.6061 + + 39 NaN NaN 98774 NaN 21466 4722 26183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26192 102.12 NaN 134840 35 0 46760 0.327 + 28261 TLLWSLTLL 9 38 530.3258219974583 1058.6370910617165 2 530.3255004882812 MULTI HCD FTMS 0 0 0 26191 90060.5703125 0.24655189951691217 7 -0.088165283203125 1 Unmodified _TLLWSLTLL_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 19.256988751693697 0.19398022840297344 1 [{I|L}T]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[{I|L}T] 9 -1 + 50.123 0 0 4.7347 4.7347 90.613 0 0 0 23.92544976785331 22.67606240177031 22.67606240177031 50.123337350737245 0 1 1.6989700043360187 0 0 [{I|L}T]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[{I|L}T] 4.7347 - 18 NaN NaN 113987.7 NaN 21467 4723 26191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26193 102.13 NaN 204560 35 0 45886 0.261 + 19804 NYAWVYYHL 9 47 614.7931667862938 NaN 0 614.79345703125 PEAK HCD FTMS 0 0 0 26191 38984.91015625 0.46378510742333173 5 -0.0586395263671875 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 32.78568957990786 0.10157793141031472 1 AWV 3 6 33.5 0 0 2.729 0 0 277.11024607083124 591.2589129708509 868.3691590416822 0 0 0 0 0 1.8807196863200843 0 0 0 + AWV 2.729 + + 36 + NaN NaN 123810.6 NaN 21468 4723 26191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26194 102.13 NaN 53591 35 0 5857.7 0.262 + 6924 FPVHRQKL 8 30 512.8064894867784 1023.5984260403569 2 512.8065795898438 MULTI HCD FTMS 0 0 0 26191 35169.1953125 0.06974103252850615 6 -0.07798004150390625 3 Unmodified _FPVHRQKL_ ENSG00000163913|ENST00000348417|IFT122;ENST00000448668.2_1_3:129200375-129202705:+|nuORF;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122 4.75600775471527 0.5349361699807423 1 {I|L}PE 3 7 26.198 0 0 2.5594 0 0 666.3910389630875 0 666.3910389630875 0 26.197887582883936 0 0 0 0 0 0 0 {I|L}PE 2.5594 - 9 NaN NaN 96147.6 NaN 21469 4723 26191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26195 102.13 NaN 95073 35 0 13496 0.261 + 33147 YEKIIVFWSS 10 36 636.3372939376696 1270.6600349421392 2 636.3383178710938 MULTI HCD FTMS 0 0 0 26191 23859.642578125 0.3745543631843926 -7 0.11475372314453125 4 Unmodified _YEKIIVFWSS_ REV__tr|U7SXC3|U7SXC3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00975PE=4SV=1 7.608950283845883 0.4350283211712914 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{I|L} 6 -1 23.033 0 0 1.8127 0 0 0 530.2600191705686 530.2600191705686 23.032731160692137 0 0 0 0 1 0 0.4247425010840047 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{I|L} 1.8127 - 29 + NaN NaN 98031.8 NaN 21470 4723 26191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26196 102.14 NaN 81785 35 0 5614.9 0.264 + 29657 VAPTPLDEL 9 39 477.7608959609698 953.5072389887396 2 477.76080322265625 MULTI HCD FTMS 0 0 0 26191 36239.265625 0.1156496719662538 -7 0.11475372314453125 5 Unmodified _VAPTPLDEL_ ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3 3.944395688203298 0.32111559684428237 1 E{I|L} 2 7 20.969 0 0 2.1992 0 0 693.3707752912125 0 693.3707752912125 0 20.969100130080562 0 0 0 0 0 0 0 + E{I|L} 2.1992 + + 1 NaN NaN 105385.3 NaN 21471 4723 26191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26198 102.14 NaN 322070 35 0 104630 0.327 -1 0 43 606.7427905510762 1211.4710281689522 2 606.7432250976562 MULTI HCD FTMS 0 0 0 26197 185467.828125 0.32336572818401044 7 -0.081146240234375 1 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 21.638 0 0 1.7861 0 0 933.3113485184839 0 933.3113485184839 0 15.184465535402296 0 0 0 0.3054621874040891 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7861 - 16 NaN NaN 144743.6 NaN 21472 4724 26197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26200 102.15 NaN 450580 35 0 113450 0.327 + 27288 SYQFILNLF 9 38 572.8055473066048 1143.5965416800095 2 572.8057250976562 MULTI HCD FTMS 0 0 0 26199 82972.5 0.04803991181754474 -5 0.06972503662109375 1 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 67.83816525789305 0.009787749748478139 1 {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 68.448 0 0 5.9854 0 0 378.1537037580094 0 378.1537037580094 0 44.17857846967344 0 0 0 2.6549471895720984 0 0 0.4247425010840047 + {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.9854 + + 104 NaN NaN 150740.1 NaN 21473 4725 26199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26201 102.15 NaN 244320 35 0 39334 0.261 + 11406 IYPPLLGALSF 11 66 595.8447347971612 1189.6749166611223 2 595.8447875976562 MULTI HCD FTMS 0 0 0 26199 60832.37890625 0.09860243669016414 19 -0.25189208984375 2 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 78.7280429016045 0.006868779721450025 1 [Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F} 10 2 + 58.936 0 0 4.9539 4.9539 82.861 0 0 0 34.47670885692698 13.50256837818165 13.50256837818165 3.424226808222066 0 2.309894379144197 1.5228787452803376 0.6505149978319906 0 [Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 4.9539;4.6661 -;+ + 96 + NaN NaN 117834.3 NaN 21474 4725 26199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26202 102.16 NaN 126940 35 0 16970 0.261 + 31611 VYILPAAYFW 10 38 621.8316033502841 1241.6486537673682 2 621.8319091796875 MULTI HCD FTMS 0 0 0 26199 41993.75390625 0.5087003441809123 -5 0.06972503662109375 3 Unmodified _VYILPAAYFW_ ENSG00000014919|ENST00000016171|COX15;nc|ENSG00000014919|Q7KZN9-2|COX15 82.93947374210147 0.0022532079955156574 1 [YV]{I|L}{I|L}PAAY{M(Oxidation (M))|F}W 10 0 + 59.09 0 0 4.759 4.759 83.104 0 0 0 4.6613518624223005 4.6613518624223005 4.6613518624223005 4.6613518624223005 0 2.6237125054200234 0 0 0 + + [YV]{I|L}{I|L}PAAY{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}YAAP{I|L}{I|L}P{M(Oxidation (M))|F};[YV]{I|L}{I|L}PAAYW{M(Oxidation (M))|F} 4.759;4.3836;4.1745 +;-;- + 132 NaN NaN 108208.2 NaN 21475 4725 26199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26203 102.16 NaN 84025 35 0 10242 0.263 + 9570 HRRKRRERPAI 11 62 492.30291836517074 1473.8869256957123 3 492.30303955078125 MULTI HCD FTMS 0 0 0 26199 29741.02734375 0.19885892730673077 -5 0.06972503662109375 4 Unmodified _HRRKRRERPAI_ ENST00000462274.1_1_21:38739279-38845117:+|nuORF 0.5059551277355931 0.4167017191902429 1 P 1 10 3.9794 0 0 0.26999 0 0 802.4987553849686 571.3156221979124 1373.814377582881 0 0 0 0 0 0 0 0 0 + P 0.26999 + + 1 + NaN NaN 97020.2 NaN 21476 4725 26199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26205 102.17 NaN 70017 35 0 8199 0.327 -1 0 38 539.9850223462347 1616.9332376389038 3 539.9847412109375 MULTI HCD FTMS 0 0 0 26204 30185.87109375 0.3006582155672324 9 -0.129852294921875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93204 NaN 21477 4726 26204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26207 102.17 NaN 1471800 35 0 492580 0.327 + 31356 VYADGIFDLF 10 52 580.2871575338445 1158.559762134489 2 580.2872314453125 MULTI HCD FTMS 0 0 0 26206 844926 0.15614158643766604 11 -0.15802764892578125 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 107.1870275148908 5.4647617103297364E-05 1 {NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 3 + 96.616 0 0 8.3393 8.3393 89.603 0 0 0 5.280287236002437 8.040361322353675 5.280287236002437 5.280287236002437 0 2.9247425010840047 1.5228787452803376 0.8494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]{I|L}G{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YN]{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AD{I|L}G{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[VS]G{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};[YV]ADG{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]{I|L}G{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 8.3393;7.8836;7.4857;7.344;7.0299;6.7943;6.3999;5.7058;5.25;4.8521 -;+;-;-;-;-;-;-;-;- + 515 NaN NaN 312711.5 NaN 21478 4727 26206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26208 102.18 NaN 114540 35 0 15304 0.261 + 31612 VYILPAAYFW 10 39 621.8316033502841 1241.6486537673682 2 621.8302612304688 MULTI HCD FTMS 0 0 0 26206 57698.49609375 0.6989431068043491 -3 0.0298919677734375 2 Unmodified _VYILPAAYFW_ ENSG00000014919|ENST00000016171|COX15;nc|ENSG00000014919|Q7KZN9-2|COX15 49.66892048692302 0.07899359579892996 1 Y{M(Oxidation (M))|F}W 3 7 36.682 0 0 2.9543 0 0 727.4275770717709 0 727.4275770717709 0 20.445312593723983 0 0 0 1.3494850021680094 0 0 0 + Y{M(Oxidation (M))|F}W 2.9543 + + 44 + NaN NaN 100291.6 NaN 21479 4727 26206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26210 102.18 NaN 194570 35 0 60894 0.327 + 28468 TPLVFTLVI 9 31 501.81538063213236 1001.6162083310647 2 501.8154602050781 MULTI HCD FTMS 0 0 0 26209 79926.8046875 0.04436166144893543 12 -0.17284393310546875 1 Unmodified _TPLVFTLVI_ REV__ENSG00000136271|ENST00000258772|DDX56;REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF;REV__ENST00000421223.5_1_7:44605603-44609680:-|nuORF;REV__ENST00000446987.5_1_7:44605603-44612175:-|nuORF;REV__nc|ENSG00000136271|Q9NY93-2|DDX56 21.74664581756881 0.17247014374749275 1 M[{I|L}T]V{I|L} 5 -1 34.961 0 0 3.4904 0 0 426.28526503730626 0 426.28526503730626 0 34.9607625286837 0 0 0 1 0 0.4247425010840047 0 M[{I|L}T]V{I|L} 3.4904 - 11 NaN NaN 114413.6 NaN 21480 4728 26209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26211 102.19 NaN 181860 35 0 50048 0.261 + 30033 VFQAGLVNLLF 11 42 610.8554902706207 1219.6964276080414 2 610.8555908203125 MULTI HCD FTMS 0 0 0 26209 39587.38671875 0.27661544164048185 9 -0.1361541748046875 2 Unmodified _VFQAGLVNLLF_ ENSG00000149483|ENST00000278826|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138 7.608950283845883 0.38555039536024605 1 V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F} 5 6 24.208 0 0 1.9848 0 0 615.3358021466812 0 615.3358021466812 0 22.614393726401687 0 0 0 0.5 0 0 0 + V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F} 1.9848 + + 7 NaN NaN 116030 NaN 21481 4728 26209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26212 102.19 NaN 158340 35 0 30644 0.261 -1 MYIIPVVLF 9 37 555.816937085154 1109.619321237108 2 555.8173217773438 MULTI HCD FTMS 0 0 0 26209 101084.328125 0.1473037530756794 30 -0.4412994384765625 3 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 36.466142684027034 0.08156716203802528 1 V{I|L}{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.5771 0 0 732.3878040998062 0 732.3878040998062 0 31.46591250700361 0 0 0 1.3494850021680094 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.5771 + + 30 NaN NaN 115202.2 NaN 21482 4728 26209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26213 102.19 NaN 56227 35 0 12724 0.262 + -1 RMLALPLI 8 29 471.7957064659161 NaN 0 471.7962341308594 PEAK HCD FTMS 0 0 0 26209 36760.78125 1 0 0 4 Oxidation (M) _RM(Oxidation (M))LALPLI_ REV__ENSG00000188338|ENST00000614032|SLC38A3 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93511.5 NaN 21483 4728 26209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26214 102.2 NaN 13864 35 0 3116.9 0.261 + 26618 SWKSQNWRW 9 8 639.3132701388407 NaN 0 639.289794921875 PEAK HCD FTMS 0 0 0 26209 6156.2255859375 0.2506610097002696 -2 0.0161895751953125 5 Unmodified _SWKSQNWRW_ ENST00000458239.1_1_2:219496901-219498831:+|nuORF 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88125 NaN 21484 4728 26209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26216 102.2 NaN 154170 35 0 8162.2 0.327 + 30338 VLEAKRRHRHR 11 65 486.6273427953711 1456.8601989863132 3 486.62738037109375 MULTI HCD FTMS 0 0 0 26215 90150.609375 0.507558743923759 -8 0.11148834228515625 1 Unmodified _VLEAKRRHRHR_ REV__ENSG00000183856|ENST00000361170|IQGAP3 0.09484139111097674 0.41850472438158626 1 W 1 -1 1.2591 0 0 0.086423 0 0 988.6228465466633 279.14447961978755 1267.7673261664509 0 0 0 0 0 0 0 0 0 W 0.086423 - 7 + NaN NaN 110803.3 NaN 21485 4729 26215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26217 102.21 NaN 52342 35 0 9624.3 0.261 -1 0 31 545.9948062819963 NaN 0 545.9946899414062 PEAK HCD FTMS 0 0 0 26215 12227.74609375 0.4751580164907892 5 -0.07144927978515625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93143.4 NaN 21486 4729 26215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26219 102.21 NaN 38974 35 0 4747.5 0.327 + 17212 LYNLLSEPLVL 11 30 637.3738376178555 NaN 0 637.3735961914062 PEAK HCD FTMS 0 0 0 26218 52558.05859375 1 0 0 1 Unmodified _LYNLLSEPLVL_ REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF 2.498486711656943 0.3350326561941647 1 V 1 -1 5.4846 0 0 0.43093 0 0 131.09647913646182 1039.5445040338502 1170.640983170312 0 0 0 0 0 0 0 0 0 V 0.43093 + + 1 + NaN NaN 89187.6 NaN 21487 4730 26218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26220 102.22 NaN 32026 35 0 3576 0.263 + 23998 RWAKFVVL 8 29 509.81321059197137 1017.6118682507428 2 509.81256103515625 MULTI HCD FTMS 0 0 0 26218 59144.8046875 1 0 0 2 Unmodified _RWAKFVVL_ REV__chr12:121950336-121951480|437|17.97|0.01|10.26|+|1|TE_info:L1MB5,L1MB5_dup6515,L1,LINE,donor,+,121949930,121950336|None,CFAP251|10;REV__chr12:121950336-121954120|394|14.57|0.01|10.67|+|1|TE_info:L1MB5,L1MB5_dup6515,L1,LINE,donor,+,121949930,121950336|None,CFAP251|10 2.302733041254933 0.5385759549224092 1 V{I|L} 2 -1 20.969 0 0 2.0606 0 0 787.4461537091812 0 787.4461537091812 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.0606 + + 1 NaN NaN 88953.7 NaN 21488 4730 26218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26221 102.22 NaN 270540 35 0 86355 0.263 -1 LNSGPGTL 8 51 400.7126717061624 NaN 0 400.7124328613281 PEAK HCD FTMS 0 0 0 26218 8796.8828125 0.612651875707409 -2 0.0295257568359375 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LNSGPGTL_ ENST00000588831.5_1_19:36427895-36428069:+|nuORF 5.230669730166228 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.87436 0 0 156.12776967320218 527.1759737604124 683.3037434336145 0 0 0 0 0 0 0 0 0 {I|L} 0.87436 + + 5 + NaN NaN 121133.2 NaN 21489 4730 26218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26223 102.22 NaN 99165 35 0 8966.8 0.327 + 29611 VAPIIFLTI 9 39 493.81795598909184 985.6213590449837 2 493.81793212890625 MULTI HCD FTMS 0 0 0 26222 27494.998046875 0.08597782165073052 1 -0.0195159912109375 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 12.531546534597751 0.2520865569484384 1 {I|L}T{I|L} 3 -1 31.198 0 0 3.1653 0 0 640.399217674025 0 640.399217674025 0 27.21848749616356 0 0 0 0.5 0 0 0 {I|L}T{I|L} 3.1653 + + 10 NaN NaN 107480.5 NaN 21490 4731 26222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26224 102.23 NaN 214980 35 0 45329 0.261 -1 0 51 591.2782576656641 1180.5419623981281 2 591.2783203125 MULTI HCD FTMS 0 0 0 26222 122924.7734375 0.07722529547721535 15 -0.2008209228515625 2 NaN NaN 1 VYAD{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 7 -1 81.286 0 0 6.8855 0 0 0 412.1483248346313 412.1483248346313 52.34591650641846 0 0 0 0 2.274227503252014 2 0.3807196863200844 0 VYAD{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 6.8855 - 399 + NaN NaN 111185.7 NaN 21491 4731 26222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26225 102.23 NaN 91570 35 0 11167 0.261 + 3131 EAPHLDPQIF 10 43 583.7962197690985 1165.5778866049968 2 583.7965698242188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EAPHLDPQIF_ ENSG00000173581|ENST00000586790|CCDC106;ENST00000586864.1_1_19:56160443-56160725:+|nuORF 8.745405648335112 0.42901288225909884 1 {I|L}{M(Oxidation (M))|F} 2 8 24.464 0 0 2.0989 0 0 887.4152699201187 0 887.4152699201187 0 10.484550065040281 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.0989 + + 27 NaN NaN 98262.7 NaN 21492 4731 26222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26226 102.23 NaN 94654 35 0 13429 0.261 + 26574 SVSFSPLFIFQ 11 39 636.3372939376696 1270.6600349421392 2 636.336669921875 MULTI HCD FTMS 0 0 0 26222 11926.7939453125 0.18722965762754726 1 -0.0195159912109375 4 Unmodified _SVSFSPLFIFQ_ ENST00000548283.6_1_12:112373822-112373960:-|nuORF 7.101721422024254 0.3877749288398915 1 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 3 9 20.458 0 0 1.61 0 0 0 847.4355175574831 847.4355175574831 13.46787486224656 0 0 0 0 1 0 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 1.61 - 15 + NaN NaN 102181.8 NaN 21493 4731 26222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26227 102.24 NaN 89903 35 0 8852.7 0.261 + 33323 YFVAVFNSW 9 35 566.7745924771651 NaN 0 566.7744750976562 PEAK HCD FTMS 0 0 0 26222 12705.1689453125 0.25398664426342177 1 -0.0195159912109375 5 Unmodified _YFVAVFNSW_ ENST00000447467.6_1_7:95726813-95727326:+|nuORF 10.823927491677226 0.2427956001690155 1 SV 2 8 19.464 0 0 1.7201 0 0 204.0922624916364 738.3244722955686 942.4167347872051 0 0 0 0 0 1 0 0 0 SV 1.7201 - 50 + NaN NaN 105729 NaN 21494 4731 26222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26229 102.24 NaN 354010 35 0 109050 0.327 + 16888 LYFLFAPTL 9 40 542.807486965137 1083.6004209970738 2 542.8076171875 MULTI HCD FTMS 0 0 0 26228 193478 0.5856252752524755 2 -0.0291900634765625 1 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 50.855029805455786 0.030374663808198754 1 {M(Oxidation (M))|F}APT{I|L} 5 4 40.802 0 0 3.7654 0 0 536.3003244167988 0 536.3003244167988 0 34.14651886415513 0 0 0 1.4247425010840047 0 1.1237125054200234 0 + {M(Oxidation (M))|F}APT{I|L} 3.7654 + + 54 + NaN NaN 149036.3 NaN 21495 4732 26228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26230 102.25 NaN 100360 35 0 9789 0.261 -1 DYMNLLGMIF 10 34 624.7856756183925 1247.5567983035849 2 625.2877197265625 MULTI HCD FTMS 0 0 0 26228 12885.6455078125 0.12661717105619721 33 -0.48003387451171875 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.3684828712757339 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 36.466 0 0 2.923 0 0 652.2516326727316 0 652.2516326727316 0 36.46591250700361 0 0 0 1.4247425010840047 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.923 + + 11 NaN NaN 103144.6 NaN 21496 4732 26228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26231 102.25 NaN 65684 35 0 16926 0.261 + 2368 DPENFPFVVL 10 33 588.8003981237613 1175.5862433143225 2 588.8011474609375 MULTI HCD FTMS 0 0 0 26228 12405.9990234375 0.19101295630526316 13 -0.1655120849609375 3 Unmodified _DPENFPFVVL_ ENSG00000075785|ENST00000265062|RAB7A 4.897010918128616 0.4493830473644964 1 V{I|L} 2 8 20.969 0 0 1.7837 0 0 945.4202543807419 0 945.4202543807419 0 15 0 0 0 0 0 0 0 + V{I|L} 1.7837 + + 3 NaN NaN 105593.9 NaN 21497 4732 26228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26233 102.26 NaN 54973 35 0 5300.3 0.327 + 13508 KYPENFFLL 9 33 585.8134875959388 1169.6124222586775 2 585.8137817382812 MULTI HCD FTMS 0 0 0 26232 43860.48046875 0.5812111912324006 -4 0.05516815185546875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.0949 0 0 778.3638783185562 0 778.3638783185562 0 15.228787452803374 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0949 + + 31 NaN NaN 94019.8 NaN 21498 4733 26232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26234 102.26 NaN 154940 35 0 33331 0.261 + 23935 RTRLRNQIP 9 37 577.3487942883094 1152.6830356434186 2 577.3495483398438 MULTI HCD FTMS 0 0 0 26232 33884.14453125 0.5243908005132952 -9 0.1135711669921875 2 Unmodified _RTRLRNQIP_ ENSG00000135473|ENST00000440411|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000550555.1_1_12:56719046-56720180:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant 4.3292370932331545 0.3181982124262546 1 {I|L}[{I|L}P] 3 6 13.072 0 0 1.134 0 0 811.4525801764249 0 811.4525801764249 0 13.071968632008437 0 0 0 0.5 0 0 0 {I|L}[{I|L}P] 1.134 - 6 + NaN NaN 116112.1 NaN 21499 4733 26232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26235 102.26 NaN 93046 35 0 9882 0.261 + 13759 KYPSPFFVF 9 43 566.297247495986 1130.5799420587718 2 566.2978515625 MULTI HCD FTMS 0 0 0 26232 23745.341796875 0.49300613093908113 13 -0.16839599609375 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 7 23.271 0 0 2.0583 0 0 866.4355090892757 0 866.4355090892757 0 3.9743156406355915 0 0 0 0.3807196863200844 0 0 0 + V{M(Oxidation (M))|F} 2.0583 + + 37 NaN NaN 99611.7 NaN 21500 4733 26232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26236 102.27 NaN 41287 35 0 5945 0.261 -1 0 38 545.9948062819963 NaN 0 545.9951171875 PEAK HCD FTMS 0 0 0 26232 18090.439453125 0.7029764326221326 9 -0.115203857421875 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98252 NaN 21501 4733 26232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26238 102.27 NaN 146080 35 0 21921 0.327 + 29658 VAPTPLDEL 9 41 477.7608959609698 953.5072389887396 2 477.7611083984375 MULTI HCD FTMS 0 0 0 26237 57169.21875 0.18244302915574068 4 -0.05806732177734375 1 Unmodified _VAPTPLDEL_ ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3 10.823927491677226 0.26684000660059787 1 E{I|L} 2 7 24.464 0 0 2.5657 0 0 693.3732777326187 0 693.3732777326187 0 14.274400170273578 0 0 0 0.5 0 0 0 + E{I|L} 2.5657 + + 28 NaN NaN 104625.3 NaN 21502 4734 26237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26239 102.28 NaN 58033 35 0 6112.7 0.261 + 13509 KYPENFFLL 9 28 585.8134875959388 1169.6124222586775 2 585.813232421875 MULTI HCD FTMS 0 0 0 26237 29429.802734375 0.38998502802922297 -3 0.0487060546875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 5.731851221503515 0.3075653528928475 1 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.432514738914 0 925.432514738914 0 17.01667520279372 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 7 NaN NaN 93440.9 NaN 21503 4734 26237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26240 102.28 NaN 77972 35 0 11016 0.261 + 3132 EAPHLDPQIF 10 37 583.7962197690985 1165.5778866049968 2 584.3099365234375 MULTI HCD FTMS 0 0 0 26237 8082.3095703125 0.058228847249239025 3 -0.0453643798828125 3 Unmodified _EAPHLDPQIF_ ENSG00000173581|ENST00000586790|CCDC106;ENST00000586864.1_1_19:56160443-56160725:+|nuORF 6.2057823575117 0.44245551207394906 1 V[HM]{M(Oxidation (M))|F} 4 8 13.188 0 0 1.1314 0 0 633.352871916598 0 633.352871916598 0 2.730012720637374 0 0 0 0 0 0 0 V[HM]{M(Oxidation (M))|F} 1.1314 - 20 NaN NaN 114203.8 NaN 21504 4734 26237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26241 102.28 NaN 62255 35 0 11786 0.261 + 28262 TLLWSLTLL 9 32 530.3258219974583 1058.6370910617165 2 530.3253173828125 MULTI HCD FTMS 0 0 0 26237 24612.564453125 0.0673799254972978 18 -0.23972320556640625 4 Unmodified _TLLWSLTLL_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 6.723162845929126 0.3000504726104499 1 {I|L}[VP] 3 -1 8.072 0 0 0.76249 0 0 731.4182627919885 0 731.4182627919885 0 8.071968632008437 0 0 0 0 0 0 0 {I|L}[VP] 0.76249 - 6 + NaN NaN 96487.3 NaN 21505 4734 26237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26242 102.29 NaN 66904 35 0 6326.5 0.261 + 2651 DVFEQVAEGM 10 39 562.7493033119896 1123.484053690779 2 562.7474365234375 MULTI HCD FTMS 0 0 0 26237 10012.2109375 0.12623342412040117 -12 0.17542266845703125 5 Unmodified _DVFEQVAEGM_ REV__ENSG00000020922|ENST00000323929|MRE11;REV__ENST00000464884.1_1_3:155830239-155830734:-|nuORF;REV__nc|ENSG00000020922|P49959-2|MRE11;REV__nc|ENSG00000020922|P49959-3|MRE11 8.155526934196011 0.43213520406898465 1 [DV]{M(Oxidation (M))|F} 3 -1 30.942 0 0 2.7541 0 0 0 759.2968844049436 759.2968844049436 27.84318117920506 0 0 0 0 0.3494850021680094 2 0 0 [DV]{M(Oxidation (M))|F} 2.7541 + + 14 + NaN NaN 97805.3 NaN 21506 4734 26237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26243 102.29 NaN 52451 35 0 4279.9 0.261 + 6925 FPVHRQKL 8 40 512.8064894867784 1023.5984260403569 2 512.8070068359375 MULTI HCD FTMS 0 0 0 26237 4835.93896484375 0.009589738225633119 15 -0.1780853271484375 6 Unmodified _FPVHRQKL_ ENSG00000163913|ENST00000348417|IFT122;ENST00000448668.2_1_3:129200375-129202705:+|nuORF;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122 4.75600775471527 0.5349361699807423 1 PE 2 7 19.464 0 0 1.9015 0 0 779.4785023419937 0 779.4785023419937 0 0 0 0 0 0 0 0 0 PE 1.9015 - 3 NaN NaN 94305.4 NaN 21507 4734 26237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26245 102.3 NaN 720090 35 0 182890 0.327 + 27289 SYQFILNLF 9 45 572.8055473066048 1143.5965416800095 2 572.8053588867188 MULTI HCD FTMS 0 0 0 26244 249290.140625 0.14433548913927297 5 -0.05918121337890625 1 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 83.42873516780209 0.004742894019233849 1 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}[YT]N{I|L}{M(Oxidation (M))|F} 9 5 + 74.191 0 0 6.4875 6.4875 88.822 0 0 0 1.1831747353331679 47.02439355929528 1.1831747353331679 9.208187539523749 0 1.4247425010840047 1.6989700043360187 0.3807196863200844 0.805462187404089 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}[YT]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}[YT]GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YYVVN{I|L}{M(Oxidation (M))|F} 6.4875;5.6824;4.9322 -;-;- 169 NaN NaN 187667.3 NaN 21508 4735 26244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26246 102.3 NaN 109840 35 0 27699 0.261 + 2643 DVFADEFIF 9 41 551.7583104442326 1101.5020679552651 2 551.7583618164062 MULTI HCD FTMS 0 0 0 26244 100040.859375 0.1907312162394682 -13 0.19829559326171875 2 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 23.1484247019978 0.1603590852062899 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 40.445 0 0 3.6718 0 0 676.2729091772628 0 676.2729091772628 0 36.549471895720984 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.6718 + + 19 NaN NaN 100223.1 NaN 21509 4735 26244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26247 102.3 NaN 190930 35 0 37804 0.261 + 19805 NYAWVYYHL 9 38 614.7931667862938 NaN 0 614.79296875 PEAK HCD FTMS 0 0 0 26244 25741.361328125 0.3062328470410312 17 -0.21685028076171875 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 32.78568957990786 0.10157793141031472 1 AWV 3 6 31.753 0 0 2.5866 0 0 277.11212594934915 591.2564787723294 868.3686047216786 0 0 0 0 0 1.7059771852360797 0 0 0 + AWV 2.5866 + + 40 + NaN NaN 128404.9 NaN 21510 4735 26244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26249 102.31 NaN 412450 35 0 104630 0.327 + 16784 LYDTIFQIF 9 43 580.3052949399254 1158.5960369466507 2 580.287109375 MULTI HCD FTMS 0 0 0 26248 69796.9921875 0.0456716730588498 -12 0.16564178466796875 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 32.30548876998284 0.10066689432505688 1 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}T]Y{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 9 2 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}T]Y + + 41.67 0.44409 0.073366 3.5966 3.5966 59.675 0 0 0 0 34.22290038707452 0 0 0 1.4247425010840047 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}T]Y{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 3.5966 - 182 + NaN NaN 162323.5 NaN 21511 4736 26248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26250 102.31 NaN 142540 35 0 15429 0.261 + 11005 IYEPNFIFF 9 54 595.2996697947202 NaN 0 595.2998046875 PEAK HCD FTMS 0 0 0 26248 19519.353515625 0.4058839081850886 19 -0.24979400634765625 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 24.020572477871973 0.16041128140741606 1 {M(Oxidation (M))|F}{I|L} 2 7 18.583 0 0 1.5635 0 0 165.08180921659033 760.3312471979124 925.4130564145028 0 0 0 0 0 0.7614393726401688 0 0 0 + {M(Oxidation (M))|F}{I|L} 1.5635 + + 19 + NaN NaN 117376.6 NaN 21512 4736 26248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26252 102.32 NaN 114960 35 0 22063 0.327 -1 MYIIPVVLF 9 39 555.816937085154 1109.619321237108 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26251 53988.15625 0.07867350146925851 39 -0.5254974365234375 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 1 V{I|L}{M(Oxidation (M))|F} 3 -1 33.5 0 0 3.019 0 0 732.3873768537125 0 732.3873768537125 0 33.41129063296272 0 0 0 0.8807196863200843 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.019 + + 12 NaN NaN 118069.2 NaN 21513 4737 26251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26253 102.32 NaN 62598 35 0 8195.2 0.261 + 23535 RNRRLHLTRRP 11 44 492.30291836517074 1473.8869256957123 3 492.3031005859375 MULTI HCD FTMS 0 0 0 26251 93854 0.6275407217016677 7 -0.08374786376953125 2 Unmodified _RNRRLHLTRRP_ REV__ENSG00000166813|ENST00000394412|KIF7 0.09484139111097674 0.41850472438158626 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 103228.3 NaN 21514 4737 26251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26254 102.33 NaN 86018 35 0 14088 0.261 + 29707 VDDLMEQQF 9 45 562.7493033119896 1123.484053690779 2 563.2506103515625 MULTI HCD FTMS 0 0 0 26251 23193.828125 0.3861685826745024 -11 0.15234375 3 Unmodified _VDDLMEQQF_ REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF 10.073929032068715 0.27331982688540024 1 {I|L}{M(Oxidation (M))|F} 2 -1 23.856 0 0 2.1234 0 0 845.3231438765224 0 845.3231438765224 0 12.619229975844686 0 0 0 0.28872548999643577 0 0 0 {I|L}{M(Oxidation (M))|F} 2.1234 + + 9 NaN NaN 95289.8 NaN 21515 4737 26251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26256 102.33 NaN 214010 35 0 11325 0.327 + 32588 WKRLRRSSRGR 11 76 486.6273427953711 1456.8601989863132 3 486.62738037109375 MULTI HCD FTMS 0 0 0 26255 132469.421875 0.7458187342417122 1 -0.0163116455078125 1 Unmodified _WKRLRRSSRGR_ REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF 0.40826533853263924 0.41713015341995335 1 [WK]R 3 -1 2.4473 0 0 0.16798 0 0 0 983.5630852990663 983.5630852990663 1.962724883926656 0 0 0 0 0 0 0 0 [WK]R 0.16798 + + 13 NaN NaN 125296.2 NaN 21516 4738 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26257 102.33 NaN 63201 35 0 8346.6 0.261 + 12198 KKRQCKVL 8 31 501.81538063213236 1001.6162083310647 2 501.8154296875 MULTI HCD FTMS 0 0 0 26255 109582.484375 0.06082141143492095 22 -0.32501220703125 2 Unmodified _KKRQCKVL_ ENSG00000198087|ENST00000359314|CD2AP 5.230669730166228 0.5342319408533849 1 V{I|L} 2 6 24.222 0 0 2.4183 0 0 771.4492054669937 0 771.4492054669937 0 24.221675119240516 0 0 0 0.3252574989159953 0 0 0 + V{I|L} 2.4183 + + 3 NaN NaN 87313 NaN 21517 4738 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26258 102.34 NaN 139870 35 0 11890 0.261 + 34038 YNAALTYMPSV 11 37 615.2953475315529 1228.5761421299057 2 615.2940673828125 MULTI HCD FTMS 0 0 0 26255 29874.791015625 0.5460974679408268 8 -0.09404754638671875 3 Unmodified _YNAALTYMPSV_ ENSG00000122591|ENST00000432176|HYCC1;nc|ENSG00000122591|Q9BYI3-3|HYCC1 2.9952420565917617 0.40578455234410343 1 [YN]AWV[{M(Oxidation (M))|F}V]A 8 7 34.614 0 0 2.8174 0 0 0 275.08742330863726 275.08742330863726 27.624562618571247 0 0 0 0 0 1.6989700043360187 0 0 [YN]AWV[{M(Oxidation (M))|F}V]A 2.8174 - 65 NaN NaN 112361.9 NaN 21518 4738 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26259 102.34 NaN 168160 35 0 15891 0.261 + 11407 IYPPLLGALSF 11 57 595.8447347971612 1189.6749166611223 2 595.8444213867188 MULTI HCD FTMS 0 0 0 26255 40296.45703125 0.06531601960503837 32 -0.43921661376953125 4 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 27.628801355627647 0.21662447369784368 1 Q{I|L}S{M(Oxidation (M))|F} 4 8 30.962 0 0 2.6026 0 0 696.4212689934358 0 696.4212689934358 0 19.992822134202015 0 0 0 0.805462187404089 0 0 0 Q{I|L}S{M(Oxidation (M))|F} 2.6026 - 66 NaN NaN 119893.4 NaN 21519 4738 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26261 102.35 NaN 960090 35 0 130680 0.411 + 16785 LYDTIFQIF 9 72 580.3052949399254 1158.5960369466507 2 580.305419921875 MULTI HCD FTMS 0 0 0 26260 212569.765625 0.13909506031063637 -9 0.13564300537109375 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 118.89474601620944 0.0014903111061077812 1 {I|L}Q{M(Oxidation (M))|F}{I|L}TEP{M(Oxidation (M))|F} 8 6 84.506 0 0 7.2938 0 0 165.07329882737594 0 165.07329882737594 0 46.09389522991868 0 0 0 3.0752574989159953 0 1.7614393726401687 0 {I|L}Q{M(Oxidation (M))|F}{I|L}TEP{M(Oxidation (M))|F} 7.2938 - 1990 + NaN NaN 374820.6 NaN 21520 4739 26260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26263 102.35 NaN 77902 35 0 8922.4 0.412 -1 0 57 539.9850223462347 1616.9332376389038 3 539.984619140625 MULTI HCD FTMS 0 0 0 26262 28848.34765625 0.2873361746445385 23 -0.34630584716796875 1 NaN NaN 1 V 1 -1 0.48455 0 0 0.029967 0 0 1114.6335091888639 400.20298181705317 1514.836491005917 0 0 0 0 0 0 0 0 0 V 0.029967 - 3 + NaN NaN 108246 NaN 21521 4740 26262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26265 102.36 NaN 333480 35 0 99138 0.327 + 16889 LYFLFAPTL 9 40 542.807486965137 1083.6004209970738 2 542.8076782226562 MULTI HCD FTMS 0 0 0 26264 71782.4453125 0.21727335559820024 11 -0.1501617431640625 1 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 44.40701690623563 0.04511410083598184 1 A{M(Oxidation (M))|F}{I|L}E[Y{I|L}] 6 6 28.862 0 0 2.6635 0 0 329.1948414533219 0 329.1948414533219 0 24.257593903009607 0 0 0 1.4247425010840047 0 0 0 A{M(Oxidation (M))|F}{I|L}E[Y{I|L}] 2.6635 - 23 NaN NaN 137311.3 NaN 21522 4741 26264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26266 102.37 NaN 56803 35 0 6348.1 0.261 + 31613 VYILPAAYFW 10 30 621.8316033502841 1241.6486537673682 2 621.8316650390625 MULTI HCD FTMS 0 0 0 26264 13463.2939453125 0.16309049862698619 11 -0.1501617431640625 2 Unmodified _VYILPAAYFW_ ENSG00000014919|ENST00000016171|COX15;nc|ENSG00000014919|Q7KZN9-2|COX15 24.67388899826682 0.2803207841117527 1 Y{M(Oxidation (M))|F}W 3 7 31.682 0 0 2.5516 0 0 727.4279023364329 0 727.4279023364329 0 20.445312593723983 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F}W 2.5516 + + 13 NaN NaN 97137.1 NaN 21523 4741 26264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26268 102.37 NaN 80945 35 0 10868 0.411 + 15462 LPDLLIFQM 9 50 545.3044321395864 1088.5943113459728 2 545.3036499023438 MULTI HCD FTMS 0 0 0 26267 55780.6171875 0.6456346239872622 -6 0.06313323974609375 1 Unmodified _LPDLLIFQM_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 24.020572477871973 0.15282392193088168 1 {I|L}{M(Oxidation (M))|F}QM 4 5 40.433 0 0 3.7142 0 0 551.3317127912125 0 551.3317127912125 0 34.200965576305755 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F}QM 3.7142 + + 30 NaN NaN 112965.6 NaN 21524 4742 26267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26270 102.38 NaN 169760 35 0 40364 0.326 -1 MVLPSLLLLP 10 36 577.3487942883094 1152.6830356434186 2 577.3489379882812 MULTI HCD FTMS 0 0 0 26269 27131.1953125 0.4198822022991644 1 -0.0225982666015625 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))VLPSLLLLP_ ENST00000440097.5_1_3:45636669-45636975:+|nuORF 3.5964929083625545 0.45626689593999237 1 {I|L}[{I|L}P] 3 -1 15.458 0 0 1.341 0 0 811.4606800763687 0 811.4606800763687 0 15.45757490560675 0 0 0 0.5 0 0 0 {I|L}[{I|L}P] 1.341 + + 2 NaN NaN 107834.9 NaN 21525 4743 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26271 102.38 NaN 60894 35 0 7090.3 0.261 + 13510 KYPENFFLL 9 26 585.8134875959388 1169.6124222586775 2 585.8132934570312 MULTI HCD FTMS 0 0 0 26269 42018.48828125 0.5568022822989833 6 -0.07157135009765625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 5.731851221503515 0.3075653528928475 1 {I|L}{I|L} 2 7 24.776 0 0 2.1183 0 0 925.4347326256787 0 925.4347326256787 0 3.8071968632008435 0 0 0 0.3807196863200844 0 0 0 + {I|L}{I|L} 2.1183 + + 6 NaN NaN 100180.1 NaN 21526 4743 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26272 102.39 NaN 48804 35 0 4251.6 0.261 + 4897 FAIGFYLLL 9 37 528.8087755728801 NaN 0 528.8087158203125 PEAK HCD FTMS 0 0 0 26269 15938.818359375 0.3529984652757832 -5 0.0484466552734375 3 Unmodified _FAIGFYLLL_ ENSG00000131482|ENST00000253801|G6PC1 9.347437153973935 0.2499504662953367 1 {I|L} 1 8 10.485 0 0 0.99323 0 0 218.10703981587886 721.3905803436597 939.4976201595387 0 0 0 0 0 0.3494850021680094 0 0 0 + {I|L} 0.99323 + + 1 + NaN NaN 89375.7 NaN 21527 4743 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26273 102.39 NaN 70989 35 0 6526.9 0.261 + 16643 LWDPVIELI 9 35 549.3156946748122 1096.6168364164243 2 549.3165893554688 MULTI HCD FTMS 0 0 0 26269 17323.416015625 0.37459631892015305 -5 0.0484466552734375 4 Unmodified _LWDPVIELI_ ENSG00000120800|ENST00000261637|UTP20 19.256988751693697 0.19398022840297344 1 {I|L}E{I|L}{I|L} 4 5 35.433 0 0 3.2311 0 0 610.3144398419937 0 610.3144398419937 0 35.43305028184122 0 0 0 0.5 0 0 0 + {I|L}E{I|L}{I|L} 3.2311 + + 8 NaN NaN 86819.8 NaN 21528 4743 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26274 102.39 NaN 116270 35 0 23968 0.261 + 4584 EYLQLLNLL 9 42 559.8263235558135 1117.6380941784269 2 559.8263549804688 MULTI HCD FTMS 0 0 0 26269 21305.34765625 0.02013062978764918 -13 0.16777801513671875 5 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 17.44264345198275 0.2096557692338702 1 {I|L}{I|L}N{I|L}{I|L} 5 4 46.186 0 0 4.1324 0 0 533.2482166974625 0 533.2482166974625 0 31.581531501239297 0 0 0 1.4247425010840047 0 0 0 + {I|L}{I|L}N{I|L}{I|L} 4.1324 + + 47 NaN NaN 98472.6 NaN 21529 4743 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26275 102.4 NaN 60328 35 0 9903.6 0.262 + 14994 LLLIQITE 8 29 471.79563416957217 NaN 0 471.7957763671875 PEAK HCD FTMS 0 0 0 26269 5650.05859375 0.18545472542433034 -17 0.21349334716796875 6 Unmodified _LLLIQITE_ ENSG00000198765|ENST00000369522|SYCP1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95489.1 NaN 21530 4743 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26278 102.41 NaN 125560 35 0 14527 0.327 + 10956 IYDKVQEWT 9 44 591.2961965720802 1180.5778402109604 2 591.2962646484375 MULTI HCD FTMS 0 0 0 26277 31467.12890625 0.16512038708049245 -3 0.0373992919921875 1 Unmodified _IYDKVQEWT_ REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4 21.536976647645854 0.1742816388551942 1 {I|L}YDT{I|L}{M(Oxidation (M))|F}N 7 -1 79.443 0 0 6.7291 0 0 0 311.14655481510005 311.14655481510005 56.17168539542085 0 0 0 0 1.086696871556164 2 0.3494850021680094 0 {I|L}YDT{I|L}{M(Oxidation (M))|F}N 6.7291 - 151 + NaN NaN 104805.2 NaN 21531 4745 26277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26279 102.41 NaN 90629 35 0 5727.5 0.262 + 29612 VAPIIFLTI 9 29 493.81789374361404 985.6212345540281 2 493.8180236816406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.2910521888787154 1 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4816320113291 0 753.4816320113291 0 20.026975159433533 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 19 NaN NaN 99110.1 NaN 21532 4745 26277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26280 102.42 NaN 37303 35 0 6090.5 0.261 + -1 RRLCKLIT 8 19 530.3259073591081 NaN 0 530.3256225585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _RRLC(Carbamidomethyl (C))KLIT_ REV__ENSG00000132300|ENST00000254630|PTCD3;REV__ENST00000480102.1_1_2:86352635-86354493:+|nuORF;REV__ENST00000484203.5_1_2:86348636-86354493:+|nuORF;REV__ENST00000594883.1_1_19:57687347-57687830:+|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93096.5 NaN 21533 4745 26277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26281 102.42 NaN 112260 35 0 18963 0.261 + 15874 LPLIGVIVI 9 43 468.82809912653676 935.6416453198735 2 468.82818603515625 MULTI HCD FTMS 0 0 0 26277 5474.0107421875 0.012079602398234404 -17 0.22711181640625 4 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 14.581692164780916 0.23437375358055648 1 V{I|L} 2 -1 25.969 0 0 2.7755 0 0 705.4799704419071 0 705.4799704419071 0 25.255762612236904 0 0 0 0.5 0 0 0 V{I|L} 2.7755 + + 6 NaN NaN 110967.5 NaN 21534 4745 26277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26283 102.42 NaN 613800 35 0 212020 0.327 + 2644 DVFADEFIF 9 54 551.7583104442326 1101.5020679552651 2 551.7584228515625 MULTI HCD FTMS 0 0 0 26282 488627 0.9315835807457309 -2 0.02300262451171875 1 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 100.37149154755038 0.004254194004462789 1 [DV]{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L} 7 3 60.022 0 0 5.4491 0 0 0 162.05620690987874 162.05620690987874 42.34591650641846 0 0 0 0 2.4247425010840047 1.5228787452803376 1.1549471895720984 0 [DV]{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L} 5.4491 - 193 NaN NaN 174286.4 NaN 21535 4746 26282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26284 102.43 NaN 204570 35 0 46582 0.261 + 27290 SYQFILNLF 9 39 572.8055473066048 1143.5965416800095 2 573.30712890625 MULTI HCD FTMS 0 0 0 26282 85665.1171875 0.08232890304923582 16 -0.2634124755859375 2 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 34.93206674587334 0.08860942999206235 1 {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5 4 59.949 0 0 5.2421 0 0 525.2231312482437 0 525.2231312482437 0 52.501225267834 0 0 0 2.3494850021680094 0 0 0 + {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.2421 + + 69 NaN NaN 113646.2 NaN 21536 4746 26282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26286 102.43 NaN 40935 35 0 6244.4 0.327 + 4898 FAIGFYLLL 9 30 528.8087755728801 NaN 0 528.8088989257812 PEAK HCD FTMS 0 0 0 26285 14116.5498046875 0.31264051723839614 -1 0.0095977783203125 1 Unmodified _FAIGFYLLL_ ENSG00000131482|ENST00000253801|G6PC1 5.230669730166228 0.26989974671959066 1 {I|L} 1 8 5.4846 0 0 0.51957 0 0 218.10252321431636 721.3920382135374 939.4945614278538 0 0 0 0 0 0 0 0 0 + {I|L} 0.51957 + + 3 + NaN NaN 86881.6 NaN 21537 4747 26285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26287 102.44 NaN 43837 35 0 7212.5 0.261 + 853 AWLARGIFQVL 11 28 637.3738376178555 NaN 0 637.3729248046875 PEAK HCD FTMS 0 0 0 26285 5806.771484375 0.1104829904250976 13 -0.22136688232421875 2 Unmodified _AWLARGIFQVL_ ENST00000395123.6_1_11:57193529-57194387:-|nuORF;ENST00000395124.5_1_11:57193529-57194590:-|nuORF;ENST00000526621.5_3_11:57193529-57194929:-|nuORF;ENST00000529112.5_3_11:57193529-57194064:-|nuORF;ENST00000532795.5_3_11:57193529-57194924:-|nuORF;ENST00000533235.5_2_11:57193529-57194920:-|nuORF;ENST00000533245.5_3_11:57193529-57194590:-|nuORF 2.735195868890462 0.3343611804837492 1 V 1 10 6.9897 0 0 0.54919 0 0 131.09738892886872 1039.5453585260377 1170.6427474549064 0 0 0 0 0 0 0 0 0 + V 0.54919 + + 1 + NaN NaN 95164.3 NaN 21538 4747 26285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26290 102.45 NaN 205560 35 0 21532 0.327 -1 LMSVIVAII 9 60 487.8023040854515 NaN 0 487.8178405761719 PEAK HCD FTMS 0 0 0 26289 3618.863037109375 0.14662606575175957 -2 0.0163726806640625 1 Oxidation (M) _LM(Oxidation (M))SVIVAII_ tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 13.50788311687929 0.22978952576613207 1 {I|L}AM{I|L}VA 6 -1 28.136 0 0 2.8899 0 0 131.06375538912147 241.15529810123283 372.2190534903543 0 0 0 0 0 0 0 0 0 {I|L}AM{I|L}VA 2.8899 - 114 + NaN NaN 113769.1 NaN 21539 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26291 102.45 NaN 140630 35 0 26457 0.261 + -1 DVFADPSMGLG 11 47 562.7493033119896 1123.484053690779 2 562.7490844726562 MULTI HCD FTMS 0 0 0 26289 68199.421875 0.8598546914416764 3 -0.06163787841796875 2 Oxidation (M) _DVFADPSM(Oxidation (M))GLG_ REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B 19.361941925380144 0.2883811769592959 1 [DV]{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{[YC]|[HE]}{I|L} 8 -1 52.401 0 0 4.6641 0 0 0 162.05593286685783 162.05593286685783 49.301915820410684 0 0 0 0 2.2302046884880937 2 0 0 [DV]{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{[YC]|[HE]}{I|L} 4.6641 - 84 + NaN NaN 118790.9 NaN 21540 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26292 102.46 NaN 190590 35 0 34037 0.261 -1 MYIIPVVLF 9 49 555.816975024597 1109.619397115994 2 555.816650390625 MULTI HCD FTMS 0 0 0 26289 38466.64453125 0.0403727479399588 -32 0.43506622314453125 3 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 1 PN{I|L}{M(Oxidation (M))|F} 4 -1 34.781 0 0 3.1345 0 0 620.3662060532971 0 620.3662060532971 0 27.33410649039925 0 0 0 1 0 0 0 PN{I|L}{M(Oxidation (M))|F} 3.1345 - 93 + NaN NaN 135515.4 NaN 21541 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26293 102.46 NaN 99290 35 0 10268 0.261 + 13791 KYPSPFFVF 9 42 566.2973706184383 NaN 0 566.297607421875 PEAK HCD FTMS 0 0 0 26289 36816.51171875 0.7298668076267107 1 -0.0290679931640625 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 17.11289562659939 0.20677709319598864 1 SVS 3 7 13.188 0 0 1.1664 0 0 203.1333021726203 651.2890108697874 854.4223130424077 0 0 0 0 0 0 0 0 0 SVS 1.1664 - 14 + NaN NaN 92998.7 NaN 21542 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26294 102.46 NaN 108690 35 0 15882 0.261 -1 0 50 479.81936538307684 957.6241778329537 2 479.81964111328125 MULTI HCD FTMS 0 0 0 26289 19222.9453125 0.09780175332197014 -13 0.14229583740234375 5 NaN NaN 1 {I|L}P{I|L} 3 -1 53.5 0 0 5.5867 0 0 0 631.3816012018186 631.3816012018186 41.32068444291761 0 0 0 0 0.7302046884880937 2 0 0 {I|L}P{I|L} 5.5867 - 19 + NaN NaN 104190.6 NaN 21543 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26295 102.47 NaN 40148 35 0 6880.4 0.261 + 23211 RFPKGGHLL 9 24 512.8066968250189 NaN 0 512.8064575195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _RFPKGGHLL_ ENSG00000167037|ENST00000400358|SGSM1;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1-3|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93223.4 NaN 21544 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26296 102.47 NaN 37563 35 0 5735.4 0.261 -1 CRFMGVIMIF 10 23 645.3141496006305 1288.6137462680608 2 645.314208984375 MULTI HCD FTMS 0 0 0 26289 16009.88671875 0.4384064226242317 6 -0.1074981689453125 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RFMGVIM(Oxidation (M))IF_ TBXA2R|p.V111I|1|0.27|ENSG00000006638|chr19:3600304-3600304|C/T|missense_variant 3.5964929083625545 0.45626689593999237 1 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6273 0 0 1010.4503040998062 0 1010.4503040998062 0 10.511525224473813 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6273 + + 2 NaN NaN 101647.4 NaN 21545 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26297 102.47 NaN 68225 35 0 4278.8 0.261 + 16242 LPYIPIIICF 10 41 596.3467103646365 NaN 0 596.7911376953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LPYIPIIICF_ REV__ENSG00000154265|ENST00000392676|ABCA5;REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF;REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5 1.844237919475145 0.33860587697544825 1 H 1 -1 8.8515 0 0 0.7434 0 0 493.2544426025166 557.3413790338499 1050.5958216363665 0 0 0 0 0 0.4247425010840047 0 0 0 H 0.7434 - 1 + NaN NaN 97657.2 NaN 21546 4749 26289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26299 102.48 NaN 122790 35 0 25602 0.327 + -1 DVFADPSMGLG 11 38 562.7493033119896 1123.484053690779 2 562.7494506835938 MULTI HCD FTMS 0 0 0 26298 62247.625 0.7848147523223001 4 -0.068817138671875 1 Oxidation (M) _DVFADPSM(Oxidation (M))GLG_ REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B 15.248480904072842 0.3242218977034194 1 [DV]{M(Oxidation (M))|F}A 4 -1 41.995 0 0 3.7379 0 0 0 688.2603853815061 688.2603853815061 7.302046884880937 0 0 0 0 0.8807196863200843 2 0 0 [DV]{M(Oxidation (M))|F}A 3.7379 + + 45 + NaN NaN 101047.9 NaN 21547 4750 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26300 102.48 NaN 85439 35 0 10827 0.262 + 9916 IDELCIPC 8 36 453.20947888614324 NaN 0 453.20928955078125 PEAK HCD FTMS 0 0 0 26298 34165.38671875 0.6898122325957324 7 -0.107452392578125 2 Unmodified _IDELCIPC_ REV__ENSG00000163743|ENST00000324439|RCHY1;REV__ENST00000504085.5_1_4:76416819-76434044:-|nuORF;REV__ENST00000512567.5_1_4:76407750-76419412:-|nuORF;REV__ENST00000514589.5_1_4:76416932-76439505:-|nuORF;REV__nc|ENSG00000163743|Q96PM5-2|RCHY1;REV__nc|ENSG00000163743|Q96PM5-3|RCHY1;REV__nc|ENSG00000163743|Q96PM5-4|RCHY1;REV__nc|ENSG00000163743|Q96PM5-6|RCHY1;REV__nc|ENSG00000163743|Q96PM5-7|RCHY1;REV__nc|ENSG00000163743|Q96PM5-8|RCHY1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91166.2 NaN 21548 4750 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26301 102.49 NaN 56502 35 0 8280 0.261 -1 ARCLDSVLGEF 11 33 633.8114010419597 1265.6082491507193 2 634.3117065429688 MULTI HCD FTMS 0 0 0 26298 12981.3291015625 0.1323476555627055 -10 0.12509918212890625 3 Carbamidomethyl (C) _ARC(Carbamidomethyl (C))LDSVLGEF_ ENSG00000179855|ENST00000644452|GIPC3 3.876331618118854 0.4019203928379901 1 W 1 -1 14.292 0 0 1.1292 0 0 516.2219709298193 560.2824190729124 1076.5043900027317 0 0 0 0 0 0.8807196863200843 0 0 0 W 1.1292 - 8 + NaN NaN 102451 NaN 21549 4750 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26302 102.49 NaN 72289 35 0 9054.9 0.261 + 33752 YLETRSEFF 9 39 596.2891310956235 NaN 0 596.2888793945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YLETRSEFF_ ENST00000353107.7_1_8:101162841-101162934:+|nuORF 7.289230182591677 0.2599242500475609 1 {I|L}Q 2 8 7.9588 0 0 0.66849 0 0 252.99579041214685 693.3976323831538 946.3934227953007 0 0 0 0 0 0 0 0 0 {I|L}Q 0.66849 - 14 + NaN NaN 100993.4 NaN 21550 4750 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26303 102.49 NaN 37033 35 0 5761.5 0.261 + 5066 FDSRPRFV 8 34 512.2713886895611 NaN 0 512.3024291992188 PEAK HCD FTMS 0 0 0 26298 5679.3779296875 0.4831049023615531 -1 0.0290679931640625 5 Unmodified _FDSRPRFV_ ENST00000463212.1_1_1:897013-897649:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91133.8 NaN 21551 4750 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26305 102.5 NaN 1569300 35 0 283060 0.327 + 16786 LYDTIFQIF 9 60 580.3052949399254 1158.5960369466507 2 580.3054809570312 MULTI HCD FTMS 0 0 0 26304 1006180.125 0.6583941265529569 3 -0.0492095947265625 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 118.89474601620944 0.0014903111061077812 1 [Y{I|L}]DT{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 9 0 + 89.148 0 0 7.6945 7.6945 90.977 0 0 0 3.4678748622465605 68.51342204748164 3.4678748622465605 9.208187539523749 0 2.805462187404089 0 1.9489700043360187 0 + + [Y{I|L}]DT{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};[Y{I|L}]DT{I|L}{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[ET]|[MV]}[YV]{I|L}{M(Oxidation (M))|F};[Y{I|L}]D{[QV]|[N{I|L}]|[RA]|[KV]}[YV]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[ET]|[MV]}{I|L}[YV]{M(Oxidation (M))|F};[Y{I|L}]D{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[YV]{M(Oxidation (M))|F} 7.6945;6.8997;3.0734;2.7987;1.6719;1.3972 +;-;-;-;-;- + 665 NaN NaN 324649.9 NaN 21552 4751 26304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26306 102.5 NaN 137630 35 0 23845 0.261 + 15463 LPDLLIFQM 9 37 545.3044321395864 1088.5943113459728 2 545.304443359375 MULTI HCD FTMS 0 0 0 26304 45617.484375 0.5280011024743188 3 -0.0492095947265625 2 Unmodified _LPDLLIFQM_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 22.736283301280096 0.1639198954644489 1 {I|L}{I|L}{M(Oxidation (M))|F}QM 5 4 46.454 0 0 4.2673 0 0 438.2459889142594 0 438.2459889142594 0 40.76728783671072 0 0 0 1 0 0 0 + {I|L}{I|L}{M(Oxidation (M))|F}QM 4.2673 + + 27 NaN NaN 105271.3 NaN 21553 4751 26304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26307 102.51 NaN 118200 35 0 26578 0.261 + 16890 LYFLFAPTL 9 37 542.807486965137 1083.6004209970738 2 542.807373046875 MULTI HCD FTMS 0 0 0 26304 46029.81640625 0.13932449117073295 21 -0.296142578125 3 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 18.13498045792455 0.20367413111508956 1 A 1 8 16.99 0 0 1.5679 0 0 683.3684832752784 326.17209802799067 1009.5405813032692 0 0 0 0 0 1 0 0 0 + A 1.5679 + + 7 + NaN NaN 99450.4 NaN 21554 4751 26304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26309 102.51 NaN 106280 35 0 12957 0.327 + 13511 KYPENFFLL 9 34 585.8134875959388 1169.6124222586775 2 585.8135375976562 MULTI HCD FTMS 0 0 0 26308 48631.19921875 0.6444297218569758 15 -0.22801971435546875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4343455650238 0 925.4343455650238 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 11 NaN NaN 112246.9 NaN 21555 4752 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26310 102.52 NaN 94467 35 0 13527 0.261 + 25775 SLFLGTAIYL 10 33 549.3156946748122 1096.6168364164243 2 549.30615234375 MULTI HCD FTMS 0 0 0 26308 22500.97265625 0.48655424089289656 4 -0.06522369384765625 2 Unmodified _SLFLGTAIYL_ tr|U7SVZ6|U7SVZ6_FUSNUBranched-chainaminoacidtransporterAzlDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01399PE=4SV=1 6.723162845929126 0.4397169348982109 1 E{I|L}{I|L} 3 8 31.198 0 0 2.8449 0 0 723.395398246327 0 723.395398246327 0 10.228787452803374 0 0 0 0.5 0 0 0 E{I|L}{I|L} 2.8449 - 15 NaN NaN 96200.3 NaN 21556 4752 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26311 102.52 NaN 84536 35 0 14947 0.261 -1 RAIQTCEELF 10 22 633.8114010419597 1265.6082491507193 2 634.3135986328125 MULTI HCD FTMS 0 0 0 26308 22376.9296875 0.22813797875871303 -8 0.1106109619140625 3 Carbamidomethyl (C) _RAIQTC(Carbamidomethyl (C))EELF_ ENST00000431167.1_1_21:36972032-36972302:-|nuORF 2.498486711656943 0.462078817294651 1 WRE{I|L}{M(Oxidation (M))|F} 5 -1 44.196 0 0 3.4921 0 0 516.220899678329 0 516.220899678329 0 42.60213141451892 0 0 0 0.9247425010840047 0 0 0 WRE{I|L}{M(Oxidation (M))|F} 3.4921 - 20 NaN NaN 117534.1 NaN 21557 4752 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26312 102.52 NaN 52634 35 0 8667.2 0.262 + -1 VYIDVVCQA 9 32 533.7647534986938 NaN 0 533.7650756835938 PEAK HCD FTMS 0 0 0 26308 9867.66015625 0.8775068189365655 3 -0.04586029052734375 4 Carbamidomethyl (C) _VYIDVVC(Carbamidomethyl (C))QA_ REV__ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;REV__ENSG00000124198|ENST00000371917|ARFGEF2 7.289230182591677 0.2599242500475609 1 A 1 -1 11.99 0 0 1.1252 0 0 262.13318933541274 729.3258761041624 991.4590654395752 0 0 0 0 0 0.5 0 0 0 A 1.1252 + + 5 + NaN NaN 110990.9 NaN 21558 4752 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26314 102.53 NaN 1262800 35 0 339560 0.327 + 4585 EYLQLLNLL 9 68 559.8263235558135 1117.6380941784269 2 559.8265380859375 MULTI HCD FTMS 0 0 0 26313 235536.65625 0.22254981729897277 -3 0.04888153076171875 1 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 142.0795815696625 1.719916958814042E-05 1 [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L} 9 0 + 100.29 0 0 8.9732 8.9732 92.934 0 0 0 20.472287753157516 16.478174818886373 16.478174818886373 9.208187539523749 0 2.305462187404089 0 2.2658715643802765 0.7742275032520141 + + [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}Q{I|L}{I|L}GG{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}N{I|L}{I|L};[Q{I|L}][YE]{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}GG{I|L}{I|L};[Q{I|L}][YE]{I|L}{I|L}GG{I|L}{I|L} 8.9732;8.1493;7.8366;7.1415;6.6366;6.3176 +;-;-;-;-;- + 596 NaN NaN 280096.9 NaN 21559 4753 26313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26315 102.53 NaN 99594 35 0 29759 0.261 + 28459 TPLVFITVL 9 17 501.8152227203406 1001.6158925074812 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26313 18849.11328125 0.13560671685010706 -9 0.126922607421875 2 Unmodified _TPLVFITVL_ REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1 15.847184025352803 0.2234401846867398 1 M[{I|L}T]V{I|L} 5 -1 29.208 0 0 2.9161 0 0 426.284471580275 0 426.284471580275 0 29.20818753952375 0 0 0 1 0 0 0 M[{I|L}T]V{I|L} 2.9161 - 11 NaN NaN 91437.8 NaN 21560 4753 26313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26316 102.54 NaN 229280 35 0 41201 0.261 + 19806 NYAWVYYHL 9 50 614.7931667862938 NaN 0 614.7940063476562 PEAK HCD FTMS 0 0 0 26313 37470.75390625 0.4457719039492851 35 -0.5209808349609375 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 47.748688679222035 0.05342496295576811 1 AWVY 4 5 34.772 0 0 2.8326 0 0 277.10499704739374 428.19516931705317 705.3001663644469 0 0 0 0 0 1.7059771852360797 0 0 0 + AWVY 2.8326 + + 37 + NaN NaN 122330.4 NaN 21561 4753 26313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26317 102.54 NaN 198220 35 0 42617 0.261 + 9979 IEHVMQPLL 9 42 540.2998847982378 1078.5852166632756 2 540.30029296875 MULTI HCD FTMS 0 0 0 26313 15245.5615234375 0.24520382973627763 -3 0.04888153076171875 4 Unmodified _IEHVMQPLL_ ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL 13.90604991867851 0.24021115267848145 1 {I|L}{I|L} 2 7 25.969 0 0 2.4077 0 0 834.4090904661897 0 834.4090904661897 0 9.542425094393252 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.4077 + + 12 NaN NaN 122009.5 NaN 21562 4753 26313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26319 102.55 NaN 37085 35 0 5136.6 0.327 + 23357 RKKRRRRQQY 10 31 492.30291836517074 1473.8869256957123 3 492.3034973144531 MULTI HCD FTMS 0 0 0 26318 5673.8369140625 0.037937261191513895 24 -0.340667724609375 1 Unmodified _RKKRRRRQQY_ ENST00000389622.6_1_3:97596453-97596525:+|nuORF 0 0.4753037046562868 1 T 1 10 4.6041 0 0 0.31238 0 0 1090.1582097306716 279.6573580377563 1369.8155677684279 0 0 0 0 0 0 0 0 0 T 0.31238 - 1 + NaN NaN 99702.4 NaN 21563 4754 26318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26320 102.55 NaN 70785 35 0 8625 0.261 -1 0 31 498.8088198618155 995.603086790431 2 498.8087158203125 MULTI HCD FTMS 0 0 0 26318 19191.130859375 0.5004160347291471 6 -0.10710906982421875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97843.5 NaN 21564 4754 26318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26322 102.56 NaN 289390 35 0 94067 0.327 + 2645 DVFADEFIF 9 55 551.7583104442326 1101.5020679552651 2 551.7583618164062 MULTI HCD FTMS 0 0 0 26321 138958.203125 0.264928422787075 7 -0.12994384765625 1 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 78.14939416004806 0.006451203201226903 1 [DV]{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L} 7 3 53.152 0 0 4.8254 0 0 0 162.05616174869377 162.05616174869377 34.96392121442915 0 0 0 0 2.16944517631652 1.5228787452803376 0.3252574989159953 0 [DV]{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L} 4.8254 - 111 + NaN NaN 130104.6 NaN 21565 4755 26321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26323 102.56 NaN 374560 35 0 111730 0.261 + 15875 LPLIGVIVI 9 54 468.82809912653676 935.6416453198735 2 468.8280944824219 MULTI HCD FTMS 0 0 0 26321 119750.6328125 0.2642559723465034 -7 0.114532470703125 2 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.11963627304438548 1 QV{I|L}V{I|L} 5 -1 48.733 0 0 5.2085 0 0 365.25572402168126 0 365.25572402168126 0 44.12921620360759 0 0 0 1.5 0 0 0 QV{I|L}V{I|L} 5.2085 - 26 NaN NaN 149387.7 NaN 21566 4755 26321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26324 102.57 NaN 298860 35 0 64606 0.261 + 27291 SYQFILNLF 9 51 572.8055473066048 1143.5965416800095 2 572.8056640625 MULTI HCD FTMS 0 0 0 26321 94219.4375 0.05455173062157544 25 -0.38356781005859375 3 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 51.41523569358685 0.02959097413485123 1 {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 58.193 0 0 5.0886 0 0 378.15327651191564 0 378.15327651191564 0 40.26084705832169 0 0 0 2.2302046884880937 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.0886 + + 75 NaN NaN 131130.2 NaN 21567 4755 26321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26325 102.57 NaN 115550 35 0 8190.8 0.261 + 29613 VAPIIFLTI 9 45 493.81789374361404 985.6212345540281 2 493.8178405761719 MULTI HCD FTMS 0 0 0 26321 42849.26171875 0.4216993697927711 -7 0.114532470703125 4 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.2910521888787154 1 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4804972744955 0 753.4804972744955 0 22.47425010840047 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 11 NaN NaN 100922.6 NaN 21568 4755 26321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26326 102.57 NaN 49694 35 0 3631.2 0.261 + 34507 YPFLLVGDLM 10 33 584.3109816002716 NaN 0 584.310791015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YPFLLVGDLM_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 6.723162845929126 0.3344301934401713 1 V 1 9 9.732 0 0 0.83421 0 0 434.1851213042556 630.3330782525999 1064.5181995568555 0 0 0 0 0 0.4247425010840047 0 0 0 + V 0.83421 + + 5 + NaN NaN 100433.7 NaN 21569 4755 26321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26328 102.58 NaN 74163 35 0 17262 0.327 -1 FLAAYMSS 8 37 453.2094743343307 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _FLAAYM(Oxidation (M))SS_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|259|2|anti-sense 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102487.8 NaN 21570 4756 26327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26329 102.58 NaN 73987 35 0 9010.4 0.261 + 4899 FAIGFYLLL 9 45 528.8087755728801 NaN 0 528.80859375 PEAK HCD FTMS 0 0 0 26327 34517.13671875 0.7644541780141673 7 -0.1234130859375 2 Unmodified _FAIGFYLLL_ ENSG00000131482|ENST00000253801|G6PC1 14.581692164780916 0.22376707489839515 1 S{I|L} 2 8 15.969 0 0 1.5128 0 0 131.0898889369726 721.3902889382084 852.480177875181 0 0 0 0 0 0.5 0 0 0 S{I|L} 1.5128 - 4 + NaN NaN 90453.8 NaN 21571 4756 26327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26331 102.59 NaN 382940 35 0 61252 0.327 -1 LHPASLGTCLW 11 50 432.88520627292405 NaN 0 432.8851318359375 PEAK HCD FTMS 0 0 0 26330 172244.4375 0.5937143525600881 178 -2.051727294921875 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LHPASLGTC(Carbamidomethyl (C))LW_ ENST00000325327.3_1_19:2429314-2429548:-|nuORF 0.5059551277355931 0.3406848944787997 1 P 1 -1 3.0989 0 0 0.35878 0 0 185.35122484349012 578.3206881158811 763.6719129593712 0 0 0 0 0 0 0 0 0 P 0.35878 + + 3 + NaN NaN 139623.6 NaN 21572 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26332 102.59 NaN 224110 35 0 37887 0.261 -1 0 51 479.81936538307684 957.6241778329537 2 479.81903076171875 MULTI HCD FTMS 0 0 0 26330 90094.796875 0.45838080254184543 -5 0.07488250732421875 2 NaN NaN 1 {I|L}P{I|L}G{I|L}V{I|L} 7 -1 56.08 0 0 5.8561 0 0 0 249.12127100162346 249.12127100162346 44.842597818871255 0 0 0 0 1.841129063296272 1.5228787452803376 0 0 {I|L}P{I|L}G{I|L}V{I|L} 5.8561 - 60 + NaN NaN 119194.3 NaN 21573 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26333 102.59 NaN 246240 35 0 28919 0.261 -1 LMSVIVAII 9 55 487.80222858098233 973.5899042287647 2 487.81781005859375 MULTI HCD FTMS 0 0 0 26330 9151.4208984375 0.2283400364016375 -4 0.05857086181640625 3 Oxidation (M) _LM(Oxidation (M))SVIVAII_ tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 13.50788311687929 0.24365122550260465 1 [{I|L}A]VY{I|L}VA{I|L} 8 -1 42.115 0 0 4.3258 0 0 0 128.0399592723151 128.0399592723151 3.241537945111183 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}A]VY{I|L}VA{I|L} 4.3258 - 421 NaN NaN 121075.8 NaN 21574 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26334 102.6 NaN 233760 35 0 44322 0.261 + 18658 MYIIPVVLF 9 38 555.816975024597 1109.619397115994 2 555.8172607421875 MULTI HCD FTMS 0 0 0 26330 96634.875 0.10142333697484185 -24 0.3308868408203125 4 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 1 NV{I|L}{M(Oxidation (M))|F} 4 6 39.68 0 0 3.576 0 0 618.3453930650159 0 618.3453930650159 0 31.893878342760047 0 0 0 1.4247425010840047 0 0 0 NV{I|L}{M(Oxidation (M))|F} 3.576 - 105 + NaN NaN 128231.2 NaN 21575 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26335 102.6 NaN 108650 35 0 17836 0.261 + 10235 IHSYFSLIF 9 34 563.8003169885736 1125.5860810439472 2 563.8007202148438 MULTI HCD FTMS 0 0 0 26330 28555.970703125 0.6866163264577732 1 -0.0359039306640625 5 Unmodified _IHSYFSLIF_ ENST00000501122.2_1_11:65204545-65204752:+|nuORF 10.823927491677226 0.26684000660059787 1 {I|L}{M(Oxidation (M))|F} 2 7 25.969 0 0 2.3072 0 0 847.4252796857437 0 847.4252796857437 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.3072 + + 4 NaN NaN 98153.6 NaN 21576 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26336 102.6 NaN 103910 35 0 8863.5 0.261 + 13792 KYPSPFFVF 9 37 566.2973706184383 NaN 0 566.2973022460938 PEAK HCD FTMS 0 0 0 26330 25551.080078125 0.5065359094989434 9 -0.14562225341796875 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 9.38312468134398 0.24977752951804 1 V 1 8 9.2917 0 0 0.82186 0 0 165.0777274242119 863.4087873697948 1028.4865147940068 0 0 0 0 0 0.3807196863200844 0 0 0 + V 0.82186 + + 5 + NaN NaN 100445.4 NaN 21577 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26337 102.61 NaN 49376 35 0 7302.6 0.261 + 4900 FAIGFYLLL 9 31 528.8087755728801 NaN 0 528.8088989257812 PEAK HCD FTMS 0 0 0 26330 4887.556640625 0.10824516310986687 8 -0.13623809814453125 7 Unmodified _FAIGFYLLL_ ENSG00000131482|ENST00000253801|G6PC1 2.302733041254933 0.2840881193086663 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95641.7 NaN 21578 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26338 102.61 NaN 38299 35 0 6775.1 0.261 -1 0 37 648.3930620888171 1294.7715712444342 2 648.3927612304688 MULTI HCD FTMS 0 0 0 26330 23006.365234375 0.21351672347148842 -11 0.1624908447265625 8 NaN NaN 1 Q 1 -1 3.9794 0 0 0.30734 0 0 983.9644556211905 179.7189882867797 1163.6834439079703 0 0 0 0 0 0 0 0 0 Q 0.30734 - 2 + NaN NaN 89529.2 NaN 21579 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26339 102.61 NaN 33204 35 0 5180.7 0.261 -1 IVDCIVDFQQ 10 25 618.8005981445312 NaN 0 618.8005981445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _IVDC(Carbamidomethyl (C))IVDFQQ_ ENSG00000160883|ENST00000292432|HK3 1.3295316138638542 0.339046394236575 1 W 1 -1 10.485 0 0 0.84924 0 0 512.2772262677751 533.2054537408811 1045.4826800086562 0 0 0 0 0 0.5 0 0 0 W 0.84924 - 1 + NaN NaN 90822.7 NaN 21580 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26340 102.62 NaN 42542 35 0 4580.2 0.261 + 3733 EMSKILRRQI 10 34 637.3741455078125 NaN 0 637.3741455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _EMSKILRRQI_ REV__ENSG00000181222|ENST00000674977|POLR2A;REV__nc|ENSG00000181222|P24928|POLR2A 2.9952420565917617 0.3376207769591857 1 V 1 -1 6.9897 0 0 0.54919 0 0 131.09546070204266 1039.5540255182252 1170.6494862202678 0 0 0 0 0 0 0 0 0 V 0.54919 - 2 + NaN NaN 93519.3 NaN 21581 4757 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26342 102.62 NaN 67168 35 0 8473.4 0.327 -1 LDMMILMSPTV 11 43 436.87979378806483 1307.6175519643946 3 437.2148132324219 MULTI HCD FTMS 0 0 0 26341 29099.869140625 0.496984032007901 -63 0.874267578125 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LDM(Oxidation (M))MILMSPTV_ ENST00000464326.1_1_9:19116607-19118356:-|nuORF 1.214830529360525 0.41359283248740725 1 {I|L}D 2 -1 8.5835 0 0 0.65642 0 0 661.2868157356821 415.21055017642817 1076.4973659121104 0 0 0 0 0 0 0 0 0 {I|L}D 0.65642 + + 6 + NaN NaN 96768.1 NaN 21582 4758 26341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26343 102.63 NaN 34684 35 0 5210.5 0.261 + -1 ELALHRCYVL 10 23 637.3389282226562 NaN 0 637.3389282226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _ELALHRC(Carbamidomethyl (C))YVL_ REV__LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|46|2|anti-sense 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94647.7 NaN 21583 4758 26341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26344 102.63 NaN 136720 35 0 16032 0.263 + 2696 DVIDEIISL 9 41 508.7791171627676 1015.5436813923352 2 508.7793273925781 MULTI HCD FTMS 0 0 0 26341 22027.203125 0.21287251606878768 -9 0.17242431640625 3 Unmodified _DVIDEIISL_ ENSG00000068323|ENST00000315869|TFE3;ENST00000481606.1_1_X:48895525-48895760:-|nuORF 29.081581746732265 0.1154664336125038 1 {I|L}{I|L}S{I|L} 4 5 45.745 0 0 4.5045 0 0 571.2492542951187 0 571.2492542951187 0 45.74539712336197 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}S{I|L} 4.5045 + + 24 NaN NaN 116969.3 NaN 21584 4758 26341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26346 102.64 NaN 691890 35 0 114030 0.327 + 16787 LYDTIFQIF 9 51 580.3052949399254 1158.5960369466507 2 580.3054809570312 MULTI HCD FTMS 0 0 0 26345 359131.4375 0.23499771386412582 11 -0.13381195068359375 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 96.11092074494114 0.00436583732602279 1 T{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 6 3 81.873 0 0 7.0666 0 0 391.17418105293126 0 391.17418105293126 0 62.487737688117235 0 0 0 2.774227503252014 0 1.5994850021680094 0 + T{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 7.0666 + + 493 NaN NaN 194737.4 NaN 21585 4759 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26347 102.64 NaN 198910 35 0 19729 0.263 + 23014 RAVTRRERRL 10 68 438.2728679170655 1311.7967743513966 3 438.273193359375 MULTI HCD FTMS 0 0 0 26345 85282.09375 0.3535814701821309 -9 0.15631866455078125 2 Unmodified _RAVTRRERRL_ nc|ENSG00000128563|Q9H875-2|PRKRIP1 1.7422754331352037 0.46608156381052757 1 P 1 10 3.0989 0 0 0.23624 0 0 1091.6658519654575 120.05021082095936 1211.7160627864168 0 0 0 0 0 0 0 0 0 P 0.23624 - 12 + NaN NaN 124381 NaN 21586 4759 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26348 102.64 NaN 260380 35 0 41344 0.261 + 25371 SEELKNIHDS 10 50 586.2819908083798 1170.5494286835594 2 586.2822265625 MULTI HCD FTMS 0 0 0 26345 27232.42578125 0.5521436937223769 -1 0.01296234130859375 3 Unmodified _SEELKNIHDS_ nc|ENSG00000034677|Q9NV58-2|RNF19A 4.897010918128616 0.4493830473644964 1 [{I|L}P]{M(Oxidation (M))|F}{I|L}G[HN]{M(Oxidation (M))|F}{I|L}N 10 8 + 33.645 0 0 2.8743 2.8743 88.009 0 0 0 3.7751372576825304 24.69273760456403 3.7751372576825304 33.64516253185087 0 0 0 0 0 [{I|L}P]{M(Oxidation (M))|F}{I|L}G[HN]{M(Oxidation (M))|F}{I|L}N 2.8743 - 77 NaN NaN 135709.3 NaN 21587 4759 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26349 102.65 NaN 139380 35 0 35216 0.261 + 30124 VGAYILYFF 9 27 546.7918775583513 1091.5692021835025 2 546.7929077148438 MULTI HCD FTMS 0 0 0 26345 32115.96484375 1 0 0 4 Unmodified _VGAYILYFF_ ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF 28.173230860318316 0.11963627304438548 1 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 41.67 0 0 3.8175 0 0 503.2745462484736 0 503.2745462484736 0 20.70107520596089 0 0 0 1.4247425010840047 0 0 0 + {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8175 + + 15 NaN NaN 108541.2 NaN 21588 4759 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26350 102.65 NaN 66401 35 0 8869.3 0.261 -1 LSSLPCIPLS 10 34 543.7970506221617 NaN 0 543.7977294921875 PEAK HCD FTMS 0 0 0 26345 11220.1962890625 0.45728877199881235 -2 0.04886627197265625 5 Carbamidomethyl (C) _LSSLPC(Carbamidomethyl (C))IPLS_ ENSG00000164169|ENST00000322396|PRMT9;nc|ENSG00000164169|Q6P2P2-2|PRMT9 6.2057823575117 0.3348729994311477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90404.1 NaN 21589 4759 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26352 102.66 NaN 585930 35 0 59379 0.326 + 17972 MKIRFKGFIR 10 72 432.5973046247137 1294.770084474341 3 432.597412109375 MULTI HCD FTMS 0 0 0 26351 231406.234375 0.5870277171437869 -9 0.15631866455078125 1 Unmodified _MKIRFKGFIR_ ENST00000315796.4_1_2:172928508-172928583:+|nuORF 0.6268255596534771 0.47198581731947004 1 P 1 10 9.6041 0 0 0.74176 0 0 1074.6391163120347 120.05052362613515 1194.6896399381699 0 0 0 0 0 0.5 0 0 0 P 0.74176 - 4 + NaN NaN 174013 NaN 21590 4760 26351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26353 102.66 NaN 187360 35 0 34683 0.261 -1 CGWIQYRRQ 9 38 633.8114010419597 1265.6082491507193 2 633.811279296875 MULTI HCD FTMS 0 0 0 26351 161891.109375 1 0 0 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GWIQYRRQ_ ENSG00000117593|ENST00000649689|DARS2 7.910154910731844 0.2910521888787154 1 {I|L}WRE{I|L}{M(Oxidation (M))|F} 6 -1 57.384 0 0 4.5341 0 0 403.13719374824376 0 403.13719374824376 0 57.38351285388511 0 0 0 1.9247425010840047 0 0 0 {I|L}WRE{I|L}{M(Oxidation (M))|F} 4.5341 - 49 NaN NaN 116452.8 NaN 21591 4760 26351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26354 102.66 NaN 77088 35 0 12944 0.261 + 29866 VFASLPGFLF 10 38 549.3050685666917 1096.5955842001833 2 549.3049926757812 MULTI HCD FTMS 0 0 0 26351 21929.486328125 0.5288128400778627 4 -0.0581512451171875 3 Unmodified _VFASLPGFLF_ ENSG00000183813|ENST00000330953|CCR4 10.823927491677226 0.4098686510432541 1 {I|L} 1 9 10.485 0 0 0.9561 0 0 404.2022869363146 576.2835191070968 980.4858060434115 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.9561 + + 1 + NaN NaN 94397.8 NaN 21592 4760 26351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26355 102.67 NaN 34018 35 0 3133.6 0.261 + 23933 RTRIQFIRW 9 27 638.375244140625 NaN 0 638.375244140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RTRIQFIRW_ ENSG00000166118|ENST00000299140|SPATA19 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100165.1 NaN 21593 4760 26351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26357 102.67 NaN 527980 35 0 145660 0.326 + 4586 EYLQLLNLL 9 53 559.8263235558135 1117.6380941784269 2 559.8265991210938 MULTI HCD FTMS 0 0 0 26356 198184.34375 0.18725700786999822 5 -0.0608978271484375 1 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 106.94017166704063 0.003441928997083001 1 [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L} 9 0 + 91.167 0 0 8.1571 8.1571 91.682 0 0 0 22.09466946751766 61.20195086035649 22.09466946751766 9.208187539523749 0 2.2614393726401687 0 1.8441876774005248 0.4247425010840047 + + [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}Q{I|L}{I|L}GG{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}GG{I|L}{I|L} 8.1571;7.3332;7.3332;6.1332 +;-;-;- + 201 NaN NaN 167764.2 NaN 21594 4761 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26358 102.68 NaN 82808 35 0 19563 0.261 + 28460 TPLVFITVL 9 20 501.8152227203406 1001.6158925074812 2 501.815185546875 MULTI HCD FTMS 0 0 0 26356 23934.701171875 0.17219410782230368 -1 0.0162506103515625 2 Unmodified _TPLVFITVL_ REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1 10.823927491677226 0.26684000660059787 1 V{I|L} 2 -1 25.969 0 0 2.5927 0 0 771.4536610334 0 771.4536610334 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.5927 + + 4 NaN NaN 97535.3 NaN 21595 4761 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26359 102.68 NaN 230900 35 0 35257 0.261 + 33251 YFIPEFNLF 9 52 595.300448713315 1188.5863444934298 2 595.29931640625 MULTI HCD FTMS 0 0 0 26356 33501.23828125 0.06994817794993906 -13 0.22827911376953125 3 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 36.12702656103203 0.08312389501731911 1 [Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 40.881 0 0 3.4395 3.4395 84.203 0 0 0 4.762036441594191 33.40674667758151 4.762036441594191 9.208187539523749 0 1.1549471895720984 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 3.4395;2.6647;2.2429 -;-;+ + 50 NaN NaN 131311.9 NaN 21596 4761 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26360 102.68 NaN 64797 35 0 14591 0.261 + 16891 LYFLFAPTL 9 21 542.807486965137 1083.6004209970738 2 542.80810546875 MULTI HCD FTMS 0 0 0 26356 17357.046875 0.05253685356341287 31 -0.4373016357421875 4 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 7.910154910731844 0.2910521888787154 1 A 1 8 16.237 0 0 1.4984 0 0 329.1938791042988 680.3455907992629 1009.5394699035617 0 0 0 0 0 0.9247425010840047 0 0 0 + A 1.4984 + + 4 + NaN NaN 109793.6 NaN 21597 4761 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26362 102.69 NaN 483170 35 0 153790 0.326 + 10851 IVIAPVLLV 9 45 468.82809912653676 935.6416453198735 2 468.8280944824219 MULTI HCD FTMS 0 0 0 26361 453161.5 1 0 0 1 Unmodified _IVIAPVLLV_ ENSG00000119820|ENST00000238831|YIPF4 36.466142684027034 0.08156716203802528 1 V{I|L}V{I|L} 4 5 46.938 0 0 5.0167 0 0 493.3267877320834 0 493.3267877320834 0 46.938200260161125 0 0 0 1.5 0 0 0 V{I|L}V{I|L} 5.0167 - 15 NaN NaN 151405.4 NaN 21598 4762 26361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26363 102.69 NaN 150790 35 0 37046 0.261 + 2646 DVFADEFIF 9 47 551.7583104442326 1101.5020679552651 2 551.7586059570312 MULTI HCD FTMS 0 0 0 26361 74203.3359375 0.14147112090804362 14 -0.15533447265625 2 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.2862 0 0 676.2708010839174 0 676.2708010839174 0 24.771212547196626 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.2862 + + 28 NaN NaN 115858.5 NaN 21599 4762 26361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26364 102.7 NaN 36930 35 0 4597.8 0.261 -1 VPDVLLLTFC 10 33 588.822021484375 NaN 0 588.822021484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _VPDVLLLTFC(Carbamidomethyl (C))_ ENST00000361682.10_1_22:19956259-19956451:+|nuORF 1.4819007175156935 0.33891598740166873 1 {I|L} 1 -1 6.9897 0 0 0.59455 0 0 426.2703905255874 633.2562349908811 1059.5266255164686 0 0 0 0 0 0 0 0 0 {I|L} 0.59455 + + 2 + NaN NaN 89258 NaN 21600 4762 26361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26366 102.7 NaN 136670 35 0 14400 0.327 + 29614 VAPIIFLTI 9 47 493.81783145037633 985.6211099675527 2 493.81793212890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 18.13498045792455 0.20367413111508956 1 T{I|L} 2 -1 29.776 0 0 3.0211 0 0 753.4771733985184 0 753.4771733985184 0 25.17220322351953 0 0 0 0.5 0 0.3807196863200844 0 T{I|L} 3.0211 + + 22 NaN NaN 105778.7 NaN 21601 4763 26365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26367 102.71 NaN 213560 35 0 43782 0.261 + 27292 SYQFILNLF 9 46 572.8055473066048 1143.5965416800095 2 572.8052368164062 MULTI HCD FTMS 0 0 0 26365 16694.2578125 0.009665740735446772 33 -0.48044586181640625 2 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 29.84058131909904 0.11198220037953927 1 {I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 5 4 34.08 0 0 2.9801 0 0 525.2232533185562 0 525.2232533185562 0 18.640033988346083 0 0 0 1.4247425010840047 0 0 0 + {I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 2.9801 + + 50 NaN NaN 115762 NaN 21602 4763 26365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26368 102.71 NaN 283800 35 0 19818 0.261 + 14250 LCIFMFVLF 9 64 566.7986793659187 1131.5828057986373 2 566.8098754882812 MULTI HCD FTMS 0 0 0 26365 5884.158203125 0.20063284787336863 9 -0.09454345703125 3 Unmodified _LCIFMFVLF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF 20.871210003555333 0.18003371494288972 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}V{I|L}{M(Oxidation (M))|F} 9 4 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}V + + 27.831 6.9281 0.81181 2.4595 2.4595 59.023 0 0 0 0 11.63303128443836 0 0 0 0.9247425010840047 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}V{I|L}{M(Oxidation (M))|F} 2.4595 - 104 + NaN NaN 134005.5 NaN 21603 4763 26365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26370 102.71 NaN 240940 35 0 43415 0.327 + 19807 NYAWVYYHL 9 58 614.7931667862938 NaN 0 614.7929077148438 PEAK HCD FTMS 0 0 0 26369 44049.88671875 0.5240407470982925 46 -0.649169921875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 43.77239144664712 0.06617713280084607 1 YVWA 4 7 36.459 0 0 2.97 0 0 431.2155018537125 274.0851833095625 705.300685163275 0 0 0 0 0 2.2302046884880937 0 0 0 YVWA 2.97 - 81 NaN NaN 118323 NaN 21604 4764 26369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26371 102.72 NaN 210700 35 0 37562 0.263 -1 0 51 479.81936183994105 957.6241707466821 2 479.8195495605469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 {I|L}P{I|L}G{I|L}V{I|L} 7 -1 63.008 0 0 6.5796 0 0 0 249.12236963443596 249.12236963443596 51.77062918686282 0 0 0 0 1.579689690656103 1.6989700043360187 0 0 {I|L}P{I|L}G{I|L}V{I|L} 6.5796 - 52 + NaN NaN 112260 NaN 21605 4764 26369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26373 102.72 NaN 770120 35 0 182940 0.327 + 18659 MYIIPVVLF 9 52 555.816975024597 1109.619397115994 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26372 400871.46875 0.4207354959442027 -16 0.27275848388671875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 1 MV{I|L}{M(Oxidation (M))|F} 4 5 43.928 0 0 3.9588 0 0 601.3502453599377 0 601.3502453599377 0 28.44335023848103 0 0 0 1.5 0 0 0 MV{I|L}{M(Oxidation (M))|F} 3.9588 - 66 + NaN NaN 201891.4 NaN 21606 4765 26372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26374 102.73 NaN 163420 35 0 17572 0.261 + 28305 TLTVLMLLA 9 53 487.80227133328157 NaN 0 487.8179931640625 PEAK HCD FTMS 0 0 0 26372 31496.43359375 1 0 0 2 Unmodified _TLTVLMLLA_ REV__ENSG00000140563|ENST00000357742|MCTP2;REV__ENST00000456504.5_1_15:94858078-95022260:+|nuORF;REV__nc|ENSG00000140563|Q6DN12-2|MCTP2;REV__nc|ENSG00000140563|Q6DN12-3|MCTP2;REV__nc|ENSG00000140563|Q6DN12-4|MCTP2 9.347437153973935 0.2499504662953367 1 {I|L}AM{I|L}V 5 -1 20.177 0 0 2.0725 0 0 131.06405569369184 312.1924052878991 443.2564609815909 0 0 0 0 0 0 0 0 0 {I|L}AM{I|L}V 2.0725 - 78 + NaN NaN 113356.2 NaN 21607 4765 26372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26376 102.73 NaN 90339 35 0 4908.6 0.411 + 16617 LVTTRLQSHLK 11 76 648.3930620888171 1294.7715712444342 2 648.392578125 MULTI HCD FTMS 0 0 0 26375 106494.953125 0.9883548846527503 -2 0.0189971923828125 1 Unmodified _LVTTRLQSHLK_ REV__ENSG00000132613|ENST00000338779|MTSS2;REV__nc|ENSG00000132613|Q765P7-2|MTSS2 4.406150317652783 0.39959678800402487 1 E 1 -1 7.892 0 0 0.60953 0 0 440.2595254817564 722.4505709283811 1162.7100964101376 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 E 0.60953 - 50 + NaN NaN 111212.9 NaN 21608 4766 26375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26378 102.74 NaN 259400 35 0 20985 0.411 + 10810 ISYIFMVLF 9 69 566.8088570038957 1131.6031610745913 2 566.8095703125 MULTI HCD FTMS 0 0 0 26377 70228.90625 0.5861814471319019 -22 0.3314208984375 1 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 16.942295170755138 0.21397866736869717 1 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5372 0 0 853.4406987716601 0 853.4406987716601 0 6.487803220352362 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5372 + + 201 + NaN NaN 171838.2 NaN 21609 4767 26377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26380 102.75 NaN 370830 35 0 40573 0.327 + 16991 LYIPIFSTF 9 51 550.8051196357795 1099.595686338359 2 551.3067626953125 MULTI HCD FTMS 0 0 0 26379 67169.46875 0.30748801261640113 -6 0.05970001220703125 1 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 67.34385681178166 0.00994769994983633 1 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 69.063 0 0 6.2808 6.2808 93.708 0 0 0 20.843852734378885 28.090992953673535 20.843852734378885 69.06349996614132 0 2.274227503252014 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 6.2808 + + 142 NaN NaN 149295.7 NaN 21610 4768 26379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26381 102.75 NaN 109000 35 0 16186 0.261 + 33268 YFLAWFHMP 9 29 606.2901312663051 1210.5657095994102 2 606.7926635742188 MULTI HCD FTMS 0 0 0 26379 33147.85546875 0.9329529700330597 -7 0.075897216796875 2 Unmodified _YFLAWFHMP_ REV__ENSG00000197181|ENST00000356766|PIWIL2;REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2;REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;REV__PPP3CC-PIWIL2|1|fusion 14.581692164780916 0.23437375358055648 1 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 27.676 0 0 2.2862 0 0 0 784.3277622156212 784.3277622156212 12.971062485323513 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.2862 - 7 + NaN NaN 105687.5 NaN 21611 4768 26379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26383 102.76 NaN 276140 35 0 41048 0.327 + 16788 LYDTIFQIF 9 44 580.3052949399254 1158.5960369466507 2 580.3056030273438 MULTI HCD FTMS 0 0 0 26382 76421.09375 0.0500061549811997 21 -0.3197479248046875 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 49.93300154707207 0.03166451819912738 1 {I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 5 4 55.745 0 0 4.8115 0 0 492.22208782731315 0 492.22208782731315 0 48.75569708000178 0 0 0 1.9247425010840047 0 0 0.3054621874040891 + {I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4.8115 + + 160 + NaN NaN 133236.2 NaN 21612 4769 26382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26384 102.76 NaN 148070 35 0 21199 0.261 + 2697 DVIDEIISL 9 42 508.7791171627676 1015.5436813923352 2 508.779052734375 MULTI HCD FTMS 0 0 0 26382 73787.71875 0.7130899577287373 2 -0.02222442626953125 2 Unmodified _DVIDEIISL_ ENSG00000068323|ENST00000315869|TFE3;ENST00000481606.1_1_X:48895525-48895760:-|nuORF 34.40172386719151 0.0910440009062557 1 {I|L}{I|L}S{I|L} 4 5 46.186 0 0 4.5479 0 0 571.2494984357437 0 571.2494984357437 0 35.728050365394424 0 0 0 1.4247425010840047 0 0 0 + {I|L}{I|L}S{I|L} 4.5479 + + 29 NaN NaN 108399.4 NaN 21613 4769 26382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26385 102.76 NaN 238250 35 0 111630 0.261 + 13 AAGLYLLLGGF 11 46 547.8159531072245 1093.6173532812488 2 547.8156127929688 MULTI HCD FTMS 0 0 0 26382 41849.59765625 0.12525067678757731 -8 0.0852813720703125 3 Unmodified _AAGLYLLLGGF_ ENSG00000219200|ENST00000593646|RNASEK;ENST00000552176.2_17:6916945-6917602:+|nuORF;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK 15.847184025352803 0.3190053777784024 1 {I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 5 7 27.703 0 0 2.5332 0 0 475.24302870918126 0 475.24302870918126 0 26.443977696234846 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 2.5332 - 17 NaN NaN 111080.5 NaN 21614 4769 26382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26387 102.77 NaN 279090 35 0 25108 0.327 + 23015 RAVTRRERRL 10 75 438.2728679170655 1311.7967743513966 3 438.2729187011719 MULTI HCD FTMS 0 0 0 26386 164712.765625 0.6829028142552169 2 -0.0256195068359375 1 Unmodified _RAVTRRERRL_ nc|ENSG00000128563|Q9H875-2|PRKRIP1 1.7422754331352037 0.46608156381052757 1 P 1 10 3.9794 0 0 0.30335 0 0 1091.6658977418247 120.05026422672108 1211.7161619685457 0 0 0 0 0 0 0 0 0 P 0.30335 - 9 + NaN NaN 147419.1 NaN 21615 4770 26386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26388 102.77 NaN 109770 35 0 9313.6 0.261 + 13512 KYPENFFLL 9 40 585.8134875959388 1169.6124222586775 2 585.8138427734375 MULTI HCD FTMS 0 0 0 26386 32318.1875 0.42826006588619586 33 -0.503082275390625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 29.693 0 0 2.5387 0 0 778.3707142560562 0 778.3707142560562 0 24.20818753952375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.5387 + + 11 NaN NaN 110979.7 NaN 21616 4770 26386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26390 102.78 NaN 624560 35 0 54649 0.327 + 17973 MKIRFKGFIR 10 78 432.5973046247137 1294.770084474341 3 432.5973815917969 MULTI HCD FTMS 0 0 0 26389 260514.875 0.6608700615447669 2 -0.02564239501953125 1 Unmodified _MKIRFKGFIR_ ENST00000315796.4_1_2:172928508-172928583:+|nuORF 0.6268255596534771 0.47198581731947004 1 P 1 10 9.6041 0 0 0.74176 0 0 1074.639162088402 120.05042444400624 1194.6895865324082 0 0 0 0 0 0.5 0 0 0 P 0.74176 - 8 + NaN NaN 182423.2 NaN 21617 4771 26389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26391 102.78 NaN 100120 35 0 18259 0.261 -1 CGWIQYRRQ 9 31 633.8114010419597 1265.6082491507193 2 633.8111572265625 MULTI HCD FTMS 0 0 0 26389 45262.1640625 0.2795840008586018 11 -0.188018798828125 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GWIQYRRQ_ ENSG00000117593|ENST00000649689|DARS2 4.75600775471527 0.31496297302216103 1 {I|L}W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 6 -1 33.148 0 0 2.6192 0 0 403.13704116035314 0 403.13704116035314 0 29.16895006820745 0 0 0 0.9247425010840047 0 0 0 {I|L}W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 2.6192 - 13 NaN NaN 96985.7 NaN 21618 4771 26389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26392 102.79 NaN 63109 35 0 13435 0.264 + -1 FMGNIEVDKKC 11 43 452.880436325613 NaN 0 452.869873046875 PEAK HCD FTMS 0 0 0 26389 11894.958984375 0.42199036760206116 8 -0.13936614990234375 3 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))GNIEVDKKC(Carbamidomethyl (C))_ REV__ENSG00000160868|ENST00000651514|CYP3A4;REV__ENSG00000160870|ENST00000336374|CYP3A7;REV__ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;REV__nc|ENSG00000160870|P24462-2|CYP3A7 0.4545168274142398 0.3408308101233591 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90723.9 NaN 21619 4771 26389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26393 102.79 NaN 65481 35 0 5909 0.261 + 20653 PFIKQRHV 8 40 512.8062252098529 1023.5978974865058 2 512.8065795898438 MULTI HCD FTMS 0 0 0 26389 23751.126953125 0.5435471941065116 -4 0.039093017578125 4 Unmodified _PFIKQRHV_ ENST00000357028.6_1_9:134735773-134735821:-|nuORF 4.75600775471527 0.5349361699807423 1 {I|L}PE 3 7 21.427 0 0 2.0933 0 0 666.3956776349625 0 666.3956776349625 0 14.463950151760654 0 0 0 0 0 0 0 {I|L}PE 2.0933 - 8 NaN NaN 89138.8 NaN 21620 4771 26389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26395 102.8 NaN 157020 35 0 67346 0.327 + -1 LVMFLLPP 8 26 473.2775471570259 944.5405413808518 2 473.2772216796875 MULTI HCD FTMS 0 0 0 26394 21088.5546875 0.5173585902300168 2 -0.02558135986328125 1 Oxidation (M) _LVM(Oxidation (M))FLLPP_ REV__ADORA1|p.L195F|1|0.24|ENSG00000163485|chr1:203165502-203165502|C/T|missense_variant 2.8892196856762586 0.5377058178582064 1 {I|L}V 2 -1 20.969 0 0 2.22 0 0 0 729.3653048150999 729.3653048150999 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}V 2.22 + + 2 + NaN NaN 104186.5 NaN 21621 4772 26394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26396 102.8 NaN 52980 35 0 15485 0.261 -1 QKALMLELKSL 11 23 645.3782281672734 NaN 0 645.3151245117188 PEAK HCD FTMS 0 0 0 26394 11363.5703125 0.651472886965947 7 -0.12329864501953125 2 Oxidation (M) _QKALM(Oxidation (M))LELKSL_ ENSG00000107341|ENST00000263228|UBE2R2 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94177.1 NaN 21622 4772 26394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26398 102.8 NaN 653360 35 0 161690 0.327 + 33252 YFIPEFNLF 9 57 595.300448713315 1188.5863444934298 2 595.3004760742188 MULTI HCD FTMS 0 0 0 26397 298620.15625 0.6234974257803534 -1 0.00957489013671875 1 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 88.95385435242217 0.004553379958619559 1 [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 0 + 71.52 0 0 6.0172 6.0172 86.332 0 0 0 7.147642715192504 64.5302509773505 7.147642715192504 7.257724967479859 0 2.110924374808178 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.0172;5.4066;4.8852;4.833;4.2745;3.701 +;-;-;-;-;- + 443 NaN NaN 197560 NaN 21623 4773 26397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26399 102.81 NaN 220330 35 0 56914 0.261 + 4587 EYLQLLNLL 9 43 559.8263235558135 1117.6380941784269 2 559.8265991210938 MULTI HCD FTMS 0 0 0 26397 83947.2109375 0.07931859420246377 17 -0.271881103515625 2 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 45.739877483867886 0.03899552410870734 1 Q{I|L}{I|L}N{I|L}{I|L} 6 3 63.206 0 0 5.6553 0 0 405.18992812324376 0 405.18992812324376 0 49.226759565325295 0 0 0 2.2059771852360797 0 0 0 + Q{I|L}{I|L}N{I|L}{I|L} 5.6553 + + 134 NaN NaN 120280.4 NaN 21624 4773 26397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26400 102.81 NaN 176340 35 0 29720 0.261 + 19808 NYAWVYYHL 9 45 614.7931667862938 NaN 0 614.793212890625 PEAK HCD FTMS 0 0 0 26397 28052.1171875 0.3337228207301848 55 -0.7619094848632812 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 47.748688679222035 0.05342496295576811 1 AWV 3 6 26.753 0 0 2.1793 0 0 277.11358556052727 591.2561879685368 868.3697735290641 0 0 0 0 0 1.2059771852360797 0 0 0 + AWV 2.1793 + + 43 + NaN NaN 111362.1 NaN 21625 4773 26397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26401 102.82 NaN 111800 35 0 20991 0.261 + 33269 YFLAWFHMP 9 37 606.2901312663051 1210.5657095994102 2 606.29052734375 MULTI HCD FTMS 0 0 0 26397 28601.6015625 0.5380091718608508 -1 0.00957489013671875 4 Unmodified _YFLAWFHMP_ REV__ENSG00000197181|ENST00000356766|PIWIL2;REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2;REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;REV__PPP3CC-PIWIL2|1|fusion 14.581692164780916 0.23437375358055648 1 [Y{M(Oxidation (M))|F}]{I|L} 3 -1 19.705 0 0 1.6278 0 0 0 784.3262130996633 784.3262130996633 9.247425010840049 0 0 0 0 0.9247425010840047 0 0 0 [Y{M(Oxidation (M))|F}]{I|L} 1.6278 + + 16 NaN NaN 101009.9 NaN 21626 4773 26397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26403 102.82 NaN 168200 35 0 45767 0.327 + 15876 LPLIGVIVI 9 37 468.82806051598527 935.6415680987706 2 468.8282470703125 MULTI HCD FTMS 0 0 0 26402 126054.3984375 0.3095798361700134 6 -0.12066650390625 1 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.11963627304438548 1 V{I|L}V{I|L} 4 -1 45.745 0 0 4.8892 0 0 493.3263138623274 0 493.3263138623274 0 45.74539712336197 0 0 0 1.3807196863200843 0 0 0 V{I|L}V{I|L} 4.8892 + + 12 NaN NaN 107763.8 NaN 21627 4774 26402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26404 102.83 NaN 153900 35 0 19838 0.261 + 17180 LYLYQLYF 8 46 561.7956704858766 1121.576788038553 2 561.796142578125 MULTI HCD FTMS 0 0 0 26402 61473.3984375 0.9475925106352231 -3 0.04164886474609375 2 Unmodified _LYLYQLYF_ REV__ENST00000306999.6_1_7:16639609-16639795:-|nuORF 19.438996006549623 0.45076845602799126 1 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F} 6 -1 42.28 0 0 3.7697 0 0 0 372.1193026178344 372.1193026178344 31.822581265925436 0 0 0 0 1.5 1.6989700043360187 0 0 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F} 3.7697 - 22 + NaN NaN 109915.5 NaN 21628 4774 26402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26406 102.83 NaN 263240 35 0 18479 0.327 + 10811 ISYIFMVLF 9 61 566.8088570038957 1131.6031610745913 2 566.80859375 MULTI HCD FTMS 0 0 0 26405 51172.9921875 0.4271269512265579 -14 0.15872955322265625 1 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 16.942295170755138 0.21397866736869717 1 {I|L}{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.6037 0 0 853.440668254082 0 853.440668254082 0 4.771212547196626 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 2.6037 + + 172 + NaN NaN 127977.2 NaN 21629 4775 26405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26407 102.83 NaN 836050 35 0 366440 0.263 -1 KKCHQCVETI 10 52 434.88223622800285 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 26405 65170.20703125 0.6353109969573293 -11 0.11682891845703125 2 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 1 V 1 -1 1.2591 0 0 0.14509 0 0 470.4520830920631 295.2063266361614 765.6584097282246 0 0 0 0 0 0 0 0 0 V 0.14509 + + 2 + NaN NaN 228046.5 NaN 21630 4775 26405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26408 102.84 NaN 93528 35 0 9160 0.261 + 29615 VAPIIFLTI 9 37 493.81783145037633 985.6211099675527 2 493.8179016113281 MULTI HCD FTMS 0 0 0 26405 94693.0234375 0.8423931298646321 -1 0.00957489013671875 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 12.531546534597751 0.2520865569484384 1 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4776173681075 0 753.4776173681075 0 20.48455006504028 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 23 NaN NaN 91560.1 NaN 21631 4775 26405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26410 102.84 NaN 137720 35 0 31574 0.327 + 7299 FTPVITIVL 9 33 501.8153386537497 1001.6161243742994 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26409 181258.28125 1 0 0 1 Unmodified _FTPVITIVL_ ENST00000379565.7_1_X:20168583-20168808:-|nuORF 20.453626601364224 0.18364154288633264 1 V{I|L} 2 7 25.969 0 0 2.5927 0 0 771.4514889974818 0 771.4514889974818 0 10.484550065040281 0 0 0 0.5 0 0 0 + V{I|L} 2.5927 + + 10 NaN NaN 104506.8 NaN 21632 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26411 102.85 NaN 90877 35 0 15387 0.261 -1 0 38 479.81936183994105 957.6241707466821 2 479.8193664550781 MULTI HCD FTMS 0 0 0 26409 133957.34375 0.7624266833287179 8 -0.15316009521484375 2 NaN NaN 1 {I|L}P{I|L} 3 -1 46.427 0 0 4.8481 0 0 0 631.3798311822874 631.3798311822874 39.43697499232712 0 0 0 0 0.5 1.5228787452803376 0 0 {I|L}P{I|L} 4.8481 - 12 + NaN NaN 95243.2 NaN 21633 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26412 102.85 NaN 108960 35 0 15048 0.261 + 28025 TFVAGYIAGVF 11 34 572.8053613193614 1143.5961697055227 2 572.8058471679688 MULTI HCD FTMS 0 0 0 26409 66876.6796875 0.6677918208166077 11 -0.19321441650390625 3 Unmodified _TFVAGYIAGVF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 8.745405648335112 0.3805662881914433 1 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 4 8 25.445 0 0 2.225 0 0 638.3058485086294 0 638.3058485086294 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 2.225 - 7 NaN NaN 107268.1 NaN 21634 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26413 102.85 NaN 149640 35 0 29366 0.261 + 16526 LTLPGLLREQR 11 39 648.3930620888171 1294.7715712444342 2 648.8958740234375 MULTI HCD FTMS 0 0 0 26409 18077.59765625 0.30416262106968595 8 -0.15316009521484375 4 Unmodified _LTLPGLLREQR_ ENST00000585077.1_1_17:80397907-80398237:+|nuORF 2.6312355333042263 0.4073809613003177 1 M 1 11 6.9897 0 0 0.53984 0 0 682.4363184141592 478.2726229303344 1160.7089413444937 0 0 0 0 0 0 0 0 0 M 0.53984 - 7 + NaN NaN 113327.3 NaN 21635 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26414 102.86 NaN 129580 35 0 38830 0.261 + 26274 SRDEFIFYS 9 32 582.272479350489 1162.530405767778 2 582.2740478515625 MULTI HCD FTMS 0 0 0 26409 40589.609375 0.7060666499237327 6 -0.123992919921875 5 Unmodified _SRDEFIFYS_ ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1 1.6526216038709556 0.33848895094777925 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99868 NaN 21636 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26415 102.86 NaN 37820 35 0 12339 0.261 -1 LHCLPRKPEE 10 18 639.8323974609375 NaN 0 639.8323974609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _LHC(Carbamidomethyl (C))LPRKPEE_ ENSG00000036473|ENST00000039007|OTC 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86753.4 NaN 21637 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26416 102.86 NaN 37004 35 0 5987.5 0.261 + 12246 KLGFYQKGRR 10 28 626.8671875 NaN 0 626.8671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KLGFYQKGRR_ ENST00000471115.5_1_1:85718343-85724278:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85499.6 NaN 21638 4776 26409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26418 102.87 NaN 1406600 35 0 308880 0.327 + 18660 MYIIPVVLF 9 46 555.816975024597 1109.619397115994 2 555.817138671875 MULTI HCD FTMS 0 0 0 26417 871392.9375 0.9145722963636037 -4 0.0645751953125 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 50.406 0 0 4.5426 0 0 423.18103328156604 0 423.18103328156604 0 50.406075122407685 0 0 0 2.3494850021680094 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.5426 + + 53 + NaN NaN 297581.4 NaN 21639 4777 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26419 102.87 NaN 122630 35 0 12933 0.261 + 28304 TLTVLMLLA 9 42 487.80175273955876 973.5889525459176 2 487.81793212890625 MULTI HCD FTMS 0 0 0 26417 13424.0634765625 0.3554008502789121 1 -0.01958465576171875 2 Unmodified _TLTVLMLLA_ REV__ENSG00000140563|ENST00000357742|MCTP2;REV__ENST00000456504.5_1_15:94858078-95022260:+|nuORF;REV__nc|ENSG00000140563|Q6DN12-2|MCTP2;REV__nc|ENSG00000140563|Q6DN12-3|MCTP2;REV__nc|ENSG00000140563|Q6DN12-4|MCTP2 9.347437153973935 0.2795965555214564 1 {I|L}MAM{I|L}V 6 -1 35.126 0 0 3.6079 0 0 0 312.1923006647094 312.1923006647094 20.231237988471378 0 0 0 0 0 0 0 0 {I|L}MAM{I|L}V 3.6079 - 93 + NaN NaN 108271.8 NaN 21640 4777 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26420 102.88 NaN 89296 35 0 22327 0.261 -1 0 30 629.3854362646879 628.3781597980878 1 629.383544921875 MULTI HCD FTMS 0 0 0 26417 48237.76953125 0.666912555813812 -12 0.146209716796875 3 NaN NaN 1 M 1 -1 3.0989 0 0 0.49317 0 0 54.03454515140658 440.2795504205688 494.3140955719754 0 0 0 0 0 0 0 0 0 M 0.49317 - 1 + NaN NaN 111992.1 NaN 21641 4777 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26421 102.88 NaN 225780 35 0 37666 0.261 + 19809 NYAWVYYHL 9 52 614.7931667862938 NaN 0 614.7922973632812 PEAK HCD FTMS 0 0 0 26417 37846.0234375 0.4502363087450361 59 -0.76910400390625 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 53.832793166522166 0.036978982887966305 1 AWV 3 6 26.599 0 0 2.1668 0 0 277.1054859845719 591.260110067375 868.3655960519468 0 0 0 0 0 1.8807196863200843 0 0 0 + AWV 2.1668 + + 77 NaN NaN 118471 NaN 21642 4777 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26422 102.88 NaN 45300 35 0 5622.3 0.262 + -1 YSLMRCIV 8 31 529.2623946262474 NaN 0 528.7733154296875 PEAK HCD FTMS 0 0 0 26417 4389.7265625 0.3101236422673271 -2 0.03899383544921875 5 Carbamidomethyl (C),Oxidation (M) _YSLM(Oxidation (M))RC(Carbamidomethyl (C))IV_ REV__ENSG00000151229|ENST00000280871|SLC2A13;REV__SLC2A13|p.G452Vfs*6|1|0.18|ENSG00000151229|chr12:39830193-39830193|C/-|frameshift_variant;REV__SLC2A13|p.K601Nfs*2|1|0.28|ENSG00000151229|chr12:39760170-39760170|T/-|frameshift_variant 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83122.2 NaN 21643 4777 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26424 102.89 NaN 748060 35 0 178620 0.327 + 33253 YFIPEFNLF 9 52 595.300448713315 1188.5863444934298 2 595.3004760742188 MULTI HCD FTMS 0 0 0 26423 310120.6875 0.6475097085395869 4 -0.078216552734375 1 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 96.28474662873226 0.004361282420133734 1 [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 0 + 70.952 0 0 5.9695 5.9695 86.082 0 0 0 7.147642715192504 63.9625938194564 7.147642715192504 6.817496819840656 0 1.6861818737241734 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}P]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}P]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9695;5.3959;4.8374;4.8223;4.2638;3.6902;1.4946;0.92097 +;-;-;-;-;-;-;- + 377 NaN NaN 204697.8 NaN 21644 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26425 102.89 NaN 617610 35 0 92104 0.261 + 16992 LYIPIFSTF 9 49 550.8051196357795 1099.595686338359 2 550.80517578125 MULTI HCD FTMS 0 0 0 26423 251523.078125 0.7302934361554086 1 -0.02956390380859375 2 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 123.09622228370866 0.0010236603636890153 1 [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 95.187 0 0 8.6566 8.6566 97.985 0 0 0 24.13734275855269 73.58594439215025 24.13734275855269 82.85789402675583 0 2.5356668758921828 1.6989700043360187 0.4247425010840047 0 + + [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{I|L}P]{I|L}[Y{I|L}] 8.6566;1.1213 +;- + 88 NaN NaN 177334.7 NaN 21645 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26426 102.9 NaN 440290 35 0 56638 0.262 + -1 CVSWEPHLLVG 11 70 432.88520627292405 NaN 0 432.8851013183594 PEAK HCD FTMS 0 0 0 26423 156006.296875 0.5377426341819457 199 -2.16900634765625 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))VSWEPHLLVG_ REV__ENST00000595961.5_1_19:39976255-39976534:+|nuORF 0.5059551277355931 0.3406848944787997 1 P 1 -1 4.6041 0 0 0.53303 0 0 643.6248761915529 120.05050836734608 763.6753845588989 0 0 0 0 0 0 0 0 0 P 0.53303 + + 7 + NaN NaN 154831.7 NaN 21646 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26427 102.9 NaN 257010 35 0 43021 0.261 + 16789 LYDTIFQIF 9 44 580.3052949399254 1158.5960369466507 2 580.3056640625 MULTI HCD FTMS 0 0 0 26423 26378.171875 0.017260561007110334 30 -0.44467926025390625 4 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 43.85829265575387 0.04763305254408404 1 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 49.923 0 0 4.3089 0 0 605.3069293128124 0 605.3069293128124 0 42.93305028184122 0 0 0 1.9247425010840047 0 0 0.3252574989159953 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4.3089 + + 134 + NaN NaN 122629.4 NaN 21647 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26428 102.9 NaN 138770 35 0 21408 0.261 + 10383 IMPTIFNLI 9 33 531.3067447701043 1060.5989366070085 2 531.3062744140625 MULTI HCD FTMS 0 0 0 26423 20448.150390625 0.2960825859614793 -4 0.06815338134765625 5 Unmodified _IMPTIFNLI_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 5 26.198 0 0 2.4701 0 0 555.3081360253875 0 555.3081360253875 0 26.197887582883936 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 2.4701 + + 8 NaN NaN 111930.5 NaN 21648 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26429 102.91 NaN 195560 35 0 27457 0.261 -1 FYIPGRMCPA 10 51 606.2901312663051 1210.5657095994102 2 606.2910766601562 MULTI HCD FTMS 0 0 0 26423 17178.68359375 0.3231388743646695 4 -0.078216552734375 6 Carbamidomethyl (C) _FYIPGRMC(Carbamidomethyl (C))PA_ ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF 15.847184025352803 0.36288280428275715 1 {I|L}{I|L}[C(Carbamidomethyl (C))H][YT]{I|L}[YE] 9 -1 + 31.373 0 0 2.5916 2.5916 80.932 0 0 0 1.650378042405908 10.898255349109508 1.650378042405908 4.4858408651094095 0 1 1.6989700043360187 0 0 {I|L}{I|L}[C(Carbamidomethyl (C))H][YT]{I|L}[YE];[Y{I|L}][HK][MD]{I|L}[YE];{I|L}{I|L}[WE][KC]Q[YE];[Y{M(Oxidation (M))|F}]{[NV]|[RG]}[YT]{I|L}[YE];{I|L}{I|L}[WE][DN]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 2.5916;2.221;1.2871;1.2724;0.23125 -;-;-;-;- 114 NaN NaN 125600.4 NaN 21649 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26430 102.91 NaN 51241 35 0 5317.5 0.262 + 2636 DVDEIIITV 9 28 508.7791171627676 1015.5436813923352 2 508.77911376953125 MULTI HCD FTMS 0 0 0 26423 24903.349609375 0.24066780788304537 11 -0.17992401123046875 7 Unmodified _DVDEIIITV_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;REV__TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 13.90604991867851 0.24021115267848145 1 {I|L}{I|L}{[TV]|[{I|L}S]} 4 -1 30.005 0 0 2.9546 0 0 571.2487049787125 0 571.2487049787125 0 30.00508444608478 0 0 0 1.3807196863200843 0 0 0 {I|L}{I|L}{[TV]|[{I|L}S]} 2.9546 + + 9 NaN NaN 92755.3 NaN 21650 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26431 102.91 NaN 30191 35 0 3973 0.261 + -1 LELIMWHFY 9 19 634.3125 NaN 0 634.3125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _LELIM(Oxidation (M))WHFY_ REV__ENST00000398602.2_1_20:20013864-20013915:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95574.7 NaN 21651 4778 26423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26433 102.92 NaN 552350 35 0 127200 0.327 + 1246 AYLQLLNLF 9 56 547.8159531072245 1093.6173532812488 2 547.8161010742188 MULTI HCD FTMS 0 0 0 26432 290580.03125 0.8696701429238813 2 -0.032562255859375 1 Unmodified _AYLQLLNLF_ ENSG00000144524|ENST00000350033|COPS7B;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B 100.37149154755038 0.004254194004462789 1 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 9 3 + 95.06 0 0 8.6922 8.6922 92.54 0 0 0 15.752574989159953 16.478174818886373 15.752574989159953 9.208187539523749 0 2.3494850021680094 1.6989700043360187 0 0.7742275032520141 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F} 8.6922;7.8502;7.2518;6.4098;6.0214;4.8639 -;-;+;-;-;- + 250 NaN NaN 176088.4 NaN 21652 4779 26432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26434 102.92 NaN 55676 35 0 7520.8 0.262 + 23363 RKLPRWKLCL 10 34 438.2728679170655 1311.7967743513966 3 438.27301025390625 MULTI HCD FTMS 0 0 0 26432 36885.73046875 0.15292906440729176 11 -0.1581573486328125 2 Unmodified _RKLPRWKLCL_ ENST00000450453.6_2_1:163292807-163295872:+|nuORF;ENST00000524800.5_1_1:163291810-163295872:+|nuORF 0.15932191953741626 0.4744603884079788 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86208.2 NaN 21653 4779 26432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26435 102.93 NaN 76538 35 0 9028.4 0.261 + 13513 KYPENFFLL 9 32 585.8134875959388 1169.6124222586775 2 585.8128051757812 MULTI HCD FTMS 0 0 0 26432 46752.1796875 0.6195301501141429 42 -0.5749740600585938 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.5 0 0 2.4367 0 0 778.3640003888687 0 778.3640003888687 0 27.390690719683093 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4367 + + 7 NaN NaN 110743.2 NaN 21654 4779 26432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26436 102.93 NaN 151440 35 0 25743 0.261 + 16790 LYDTIFQIF 9 38 580.3052949399254 1158.5960369466507 2 580.2860717773438 MULTI HCD FTMS 0 0 0 26432 26612.818359375 0.01741410197188421 31 -0.4441986083984375 4 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 48.928 0 0 4.223 0 0 605.306617079296 0 605.306617079296 0 41.938200260161125 0 0 0 1.8494850021680094 0 0 0 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4.223 + + 123 NaN NaN 108008.5 NaN 21655 4779 26432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26437 102.93 NaN 185370 35 0 17080 0.261 + 33270 YFLAWFHMP 9 45 606.2901312663051 1210.5657095994102 2 606.8037719726562 MULTI HCD FTMS 0 0 0 26432 12944.0498046875 0.36431285037198935 2 -0.032562255859375 5 Unmodified _YFLAWFHMP_ REV__ENSG00000197181|ENST00000356766|PIWIL2;REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2;REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;REV__PPP3CC-PIWIL2|1|fusion 14.581692164780916 0.23437375358055648 1 [Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L} 8 -1 33.311 0 0 2.7517 0 0 0 161.03190261644104 161.03190261644104 17.85335007137462 0 0 0 0 1 1.5228787452803376 0 0 [Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L} 2.7517 - 123 NaN NaN 109890.4 NaN 21656 4779 26432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26438 102.94 NaN 110430 35 0 17584 0.261 + -1 RYLCPDLPD 9 32 574.7715155648042 NaN 0 574.790283203125 PEAK HCD FTMS 0 0 0 26432 8949.798828125 0.5134191814956987 -2 0.0491485595703125 6 Carbamidomethyl (C) _RYLC(Carbamidomethyl (C))PDLPD_ REV__ENSG00000176383|ENST00000324189|B3GNT4;REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4 4.3292370932331545 0.2742679634796037 1 {I|L} 1 -1 6.9897 0 0 0.60911 0 0 739.2555727782427 292.16669641666255 1031.4222691949053 0 0 0 0 0 0 0 0 0 {I|L} 0.60911 + + 5 + NaN NaN 112255.8 NaN 21657 4779 26432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26440 102.94 NaN 38087 35 0 6013.2 0.327 + 20992 PLLQRRQRL 9 26 590.3747998638537 NaN 0 590.3753662109375 PEAK HCD FTMS 0 0 0 26439 16791.34765625 0.40744371729187845 12 -0.16748046875 1 Unmodified _PLLQRRQRL_ ENSG00000266714|ENST00000645453|MYO15B 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88097.1 NaN 21658 4780 26439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26441 102.95 NaN 51091 35 0 7824.4 0.261 + -1 YNIKHFFMK 9 27 622.3163425129143 NaN 0 622.3169555664062 PEAK HCD FTMS 0 0 0 26439 16305.7841796875 0.9360418006268636 -8 0.14624786376953125 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 6.723162845929126 0.26266733336404485 1 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.427288442041 274.08286462955317 1126.5101530715942 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 3 + NaN NaN 95259.3 NaN 21659 4780 26439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26443 102.95 NaN 284190 35 0 18186 0.327 + 10812 ISYIFMVLF 9 60 566.8088570038957 1131.6031610745913 2 566.808837890625 MULTI HCD FTMS 0 0 0 26442 108297.2421875 0.9039274215645755 -8 0.1462860107421875 1 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 16.942295170755138 0.21397866736869717 1 V{I|L}{M(Oxidation (M))|F} 3 -1 33.188 0 0 2.9328 0 0 754.36918837715 0 754.36918837715 0 2.7422750325201406 0 0 0 0.8494850021680094 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.9328 + + 98 NaN NaN 123639.2 NaN 21660 4781 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26444 102.96 NaN 226700 35 0 67993 0.262 + 15877 LPLIGVIVI 9 33 468.82806051598527 935.6415680987706 2 468.8280944824219 MULTI HCD FTMS 0 0 0 26442 153976.296875 0.3781538554107849 13 -0.18746185302734375 2 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.11963627304438548 1 V{I|L}V{I|L} 4 -1 45.745 0 0 4.8892 0 0 493.3264286122579 0 493.3264286122579 0 45.74539712336197 0 0 0 1.3807196863200843 0 0 0 V{I|L}V{I|L} 4.8892 + + 12 NaN NaN 116451.9 NaN 21661 4781 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26445 102.96 NaN 64461 35 0 10353 0.261 + 15204 LNIDTALFVI 10 34 559.8263235558135 1117.6380941784269 2 559.8271484375 MULTI HCD FTMS 0 0 0 26442 39618.7734375 0.03743430398691932 25 -0.3438568115234375 3 Unmodified _LNIDTALFVI_ REV__ENSG00000181788|ENST00000312960|SIAH2;REV__ENSG00000196470|ENST00000394725|SIAH1;REV__nc|ENSG00000196470|Q8IUQ4-2|SIAH1;REV__nc|ENSG00000196470|Q8IUQ4-3|SIAH1 6.2057823575117 0.44245551207394906 1 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 -1 21.198 0 0 1.8967 0 0 646.3287831037125 0 646.3287831037125 0 15.713337517843655 0 0 0 0.5 0 0 0 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 1.8967 - 14 NaN NaN 112251 NaN 21662 4781 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26446 102.96 NaN 192360 35 0 79137 0.262 + -1 LVMFLLPP 8 24 473.2775471570259 944.5405413808518 2 473.27801513671875 MULTI HCD FTMS 0 0 0 26442 27683.54296875 0.6791512730540034 11 -0.157867431640625 4 Oxidation (M) _LVM(Oxidation (M))FLLPP_ REV__ADORA1|p.L195F|1|0.24|ENSG00000163485|chr1:203165502-203165502|C/T|missense_variant 2.8892196856762586 0.5377058178582064 1 {I|L}V 2 -1 20.969 0 0 2.22 0 0 0 729.3648317946934 729.3648317946934 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}V 2.22 + + 1 + NaN NaN 121766.5 NaN 21663 4781 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26448 102.97 NaN 85872 35 0 7635.9 0.327 + 29616 VAPIIFLTI 9 39 493.81783145037633 985.6211099675527 2 493.81787109375 MULTI HCD FTMS 0 0 0 26447 38613.87890625 0.3435106951624504 6 -0.08216094970703125 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.2910521888787154 1 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.477941887115 0 753.477941887115 0 23.494850021680094 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 5 NaN NaN 99505 NaN 21664 4782 26447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26449 102.97 NaN 251060 35 0 40716 0.261 + 19810 NYAWVYYHL 9 47 614.7931667862938 NaN 0 614.7929077148438 PEAK HCD FTMS 0 0 0 26447 38417.18359375 0.45703113200769446 64 -0.7496871948242188 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 32.78568957990786 0.10157793141031472 1 AW 2 7 23.711 0 0 1.9316 0 0 277.1121559864592 690.3263033502561 967.4384593367154 0 0 0 0 0 1.274227503252014 0 0 0 + AW 1.9316 + + 28 + NaN NaN 114903.2 NaN 21665 4782 26447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26450 102.98 NaN 74270 35 0 9318.2 0.261 + -1 IYLNQRRC 8 26 561.7956704858766 1121.576788038553 2 561.7957153320312 MULTI HCD FTMS 0 0 0 26447 17285.8515625 0.2664557987180529 5 -0.06922149658203125 3 Carbamidomethyl (C) _IYLNQRRC(Carbamidomethyl (C))_ REV__ENST00000521082.5_1_7:23205510-23207476:+|nuORF 14.581692164780916 0.48650662947107914 1 [Y{I|L}]{I|L} 3 -1 37.447 0 0 3.3388 0 0 0 729.3223684431031 729.3223684431031 37.447274948966935 0 0 0 0 1 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.3388 + + 13 NaN NaN 102508.2 NaN 21666 4782 26447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26451 102.98 NaN 25990 35 0 8823 0.261 + -1 CYAGCLWSHD 10 19 634.74560546875 NaN 0 634.74560546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YAGC(Carbamidomethyl (C))LWSHD_ REV__DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86486.8 NaN 21667 4782 26447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26453 102.98 NaN 86239 35 0 23419 0.327 + 8654 HFDPGGYI 8 43 453.2094743343307 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 26452 27566.908203125 0.4886738718379336 21 -0.29695892333984375 1 Unmodified _HFDPGGYI_ REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;REV__ENSG00000107611|ENST00000377833|CUBN 0.7936320650641473 0.38822285293237185 1 P 1 -1 0.48455 0 0 0.053577 0 0 451.46065291495205 352.86179529361567 804.3224482085677 0 0 0 0 0 0 0 0 0 P 0.053577 + + 1 + NaN NaN 88500.6 NaN 21668 4783 26452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26454 102.99 NaN 51015 35 0 8737.9 0.261 -1 0 22 479.81936183994105 957.6241707466821 2 479.81964111328125 MULTI HCD FTMS 0 0 0 26452 17638.052734375 0.1003880912400262 15 -0.23365020751953125 2 NaN NaN 1 {I|L}P{I|L}M 4 -1 31.23 0 0 3.2612 0 0 0 500.34528528385005 500.34528528385005 24.240247145042062 0 0 0 0 0.3807196863200844 0 0 0 {I|L}P{I|L}M 3.2612 - 9 + NaN NaN 94244.7 NaN 21669 4783 26452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26455 102.99 NaN 79290 35 0 9713.7 0.261 + -1 IYLNQRRC 8 40 561.7956704858766 1121.576788038553 2 561.7947387695312 MULTI HCD FTMS 0 0 0 26452 13089.419921875 0.20176916522906752 6 -0.0854644775390625 3 Carbamidomethyl (C) _IYLNQRRC(Carbamidomethyl (C))_ REV__ENST00000521082.5_1_7:23205510-23207476:+|nuORF 14.581692164780916 0.48650662947107914 1 [Y{I|L}]{I|L} 3 -1 36.254 0 0 3.2325 0 0 0 729.3223852399971 729.3223852399971 35.97688517291862 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.2325 + + 14 + NaN NaN 97045.7 NaN 21670 4783 26452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26457 103 NaN 1026200 35 0 203090 0.411 + 18661 MYIIPVVLF 9 59 555.816975024597 1109.619397115994 2 555.817138671875 MULTI HCD FTMS 0 0 0 26456 758086.125 0.7956508922045697 3 -0.0400543212890625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 67.41302359171755 0.009925318700911543 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}[VP]V{I|L}{M(Oxidation (M))|F} 9 0 + 55.34 0 0 4.9873 4.9873 91.261 0 0 0 4.762036441594191 51.36046240493748 4.762036441594191 55.339862491657854 0 2.4247425010840047 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.9873 + + 93 NaN NaN 392815 NaN 21671 4784 26456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26459 103 NaN 128890 35 0 18019 0.327 + 28469 TPLVFTLVI 9 39 501.8153386537497 1001.6161243742994 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26458 45881.36328125 0.2531269907495606 9 -0.1344757080078125 1 Unmodified _TPLVFTLVI_ REV__ENSG00000136271|ENST00000258772|DDX56;REV__ENST00000415758.1_1_7:44608571-44609680:-|nuORF;REV__ENST00000421223.5_1_7:44605603-44609680:-|nuORF;REV__ENST00000446987.5_1_7:44605603-44612175:-|nuORF;REV__nc|ENSG00000136271|Q9NY93-2|DDX56 10.823927491677226 0.26684000660059787 1 V{I|L} 2 -1 24.464 0 0 2.4424 0 0 771.4526027207576 0 771.4526027207576 0 23.494850021680094 0 0 0 0.3494850021680094 0 0 0 V{I|L} 2.4424 + + 9 NaN NaN 113694.4 NaN 21672 4785 26458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26460 103.01 NaN 106360 35 0 11854 0.261 + 14680 LGYLLLGLL 9 37 487.81785965787174 973.6211663825435 2 487.8179626464844 MULTI HCD FTMS 0 0 0 26458 14992.994140625 0.0867983607525714 17 -0.25567626953125 2 Unmodified _LGYLLLGLL_ ENSG00000173338|ENST00000340313|KCNK7 56.04830969593885 0.023109620888794903 1 {I|L}{I|L}MA{I|L}{I|L} 6 5 59.373 0 0 6.0982 0 0 301.19966323066564 0 301.19966323066564 0 59.373212897245295 0 0 0 2.274227503252014 0 0 0 {I|L}{I|L}MA{I|L}{I|L} 6.0982 - 139 NaN NaN 105603.7 NaN 21673 4785 26458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26461 103.01 NaN 124320 35 0 23387 0.261 + 27293 SYQFILNLF 9 36 572.8056290380515 NaN 0 572.8054809570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 13.614867670302875 0.2292710935503678 1 {I|L}N{I|L}{I|L} 4 6 26.67 0 0 2.3321 0 0 165.0804220391904 522.1992891900999 687.2797112292903 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}N{I|L}{I|L} 2.3321 - 15 + NaN NaN 98125.5 NaN 21674 4785 26458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26463 103.02 NaN 190770 35 0 26264 0.327 + 16993 LYIPIFSTF 9 37 550.8051196357795 1099.595686338359 2 550.8052978515625 MULTI HCD FTMS 0 0 0 26462 66018.3203125 0.19168319006601708 9 -0.13472747802734375 1 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 50.855029805455786 0.030374663808198754 1 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 53.918 0 0 4.9035 4.9035 91.026 0 0 0 7.147642715192504 43.460696996448576 7.147642715192504 53.918271902055324 0 1.805462187404089 0 0 0 + + [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 4.9035 + + 33 NaN NaN 115575.6 NaN 21675 4786 26462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26464 103.02 NaN 387650 35 0 61377 0.261 + 33254 YFIPEFNLF 9 51 595.300448713315 1188.5863444934298 2 595.801513671875 MULTI HCD FTMS 0 0 0 26462 59782.859375 0.16393480763286652 12 -0.20025634765625 2 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 51.629811660486645 0.02929079705179888 1 [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 0 + 44.975 0 0 3.7839 3.7839 80.606 0 0 0 7.147642715192504 37.984842359102075 7.147642715192504 2.003187623076954 0 1.3882104921644451 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.7839;3.6153;3.3621;3.0092;2.8406;2.5873 +;-;-;-;-;- + 146 NaN NaN 148040.1 NaN 21676 4786 26462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26465 103.02 NaN 161760 35 0 17144 0.261 -1 YNRRCVNTF 9 51 615.2951920325654 1228.5758311319307 2 615.2953491210938 MULTI HCD FTMS 0 0 0 26462 26041.298828125 0.7088073283490716 5 -0.07585906982421875 3 Carbamidomethyl (C) _YNRRC(Carbamidomethyl (C))VNTF_ ENSG00000198759|ENST00000361306|EGFL6;nc|ENSG00000198759|Q8IUX8-2|EGFL6 6.2057823575117 0.30397260197431997 1 [YN]A[{M(Oxidation (M))|F}V]VWA 8 -1 40.623 0 0 3.3065 0 0 0 275.0859989388245 275.0859989388245 33.63290021996811 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [YN]A[{M(Oxidation (M))|F}V]VWA 3.3065 - 161 NaN NaN 108545.8 NaN 21677 4786 26462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26466 103.03 NaN 105230 35 0 16367 0.261 + 10384 IMPTIFNLI 9 31 531.3067447701043 1060.5989366070085 2 531.8088989257812 MULTI HCD FTMS 0 0 0 26462 12626.80078125 0.3405518196538013 -3 0.03339385986328125 4 Unmodified _IMPTIFNLI_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 5 26.198 0 0 2.4701 0 0 555.3081910815165 0 555.3081910815165 0 11.593793813122062 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 2.4701 + + 7 NaN NaN 98565.3 NaN 21678 4786 26462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26467 103.03 NaN 45088 35 0 5533.8 0.261 + 30545 VMVMYVDT 8 34 479.2255048574089 NaN 0 479.22589111328125 PEAK HCD FTMS 0 0 0 26462 16003.091796875 0.6406326244654835 -5 0.06572723388671875 5 Unmodified _VMVMYVDT_ REV__ERBB4|p.I947T|1|0.4|ENSG00000178568|chr2:211424181-211424181|A/G|missense_variant 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90500.1 NaN 21679 4786 26462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26469 103.04 NaN 273560 35 0 55894 0.327 + -1 KKMGRKCRCN 10 54 432.88520627292405 NaN 0 432.8851623535156 PEAK HCD FTMS 0 0 0 26468 155846.640625 0.5371923104183646 208 -2.2044677734375 1 Carbamidomethyl (C),Oxidation (M) _KKM(Oxidation (M))GRKCRC(Carbamidomethyl (C))N_ REV__ENSG00000151892|ENST00000355422|GFRA1;REV__nc|ENSG00000151892|P56159-2|GFRA1 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122729.7 NaN 21680 4787 26468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26470 103.04 NaN 117140 35 0 22119 0.261 + 32222 VYTLDIPVLF 10 37 590.3366498532699 1178.6587467733398 2 590.3364868164062 MULTI HCD FTMS 0 0 0 26468 46429.578125 0.27808990761946617 -8 0.1178741455078125 2 Unmodified _VYTLDIPVLF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 14.838274106304384 0.3723198072575719 1 {I|L}{M(Oxidation (M))|F} 2 8 25.969 0 0 2.2033 0 0 900.4946766584 0 900.4946766584 0 25.255762612236904 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2033 + + 9 NaN NaN 94350.6 NaN 21681 4787 26468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26471 103.04 NaN 98801 35 0 12943 0.261 + 16132 LPTIMFNLL 9 37 531.3067447701043 1060.5989366070085 2 531.3060302734375 MULTI HCD FTMS 0 0 0 26468 42888.15625 0.6210065931167016 5 -0.0725555419921875 3 Unmodified _LPTIMFNLL_ REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 -1 26.198 0 0 2.4701 0 0 555.3093189537445 0 555.3093189537445 0 26.197887582883936 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 2.4701 + + 6 NaN NaN 97019.3 NaN 21682 4787 26468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26473 103.05 NaN 99969 35 0 17998 0.327 + 1247 AYLQLLNLF 9 36 547.8159531072245 1093.6173532812488 2 547.8160400390625 MULTI HCD FTMS 0 0 0 26472 32056.46875 0.09594105155650622 11 -0.1771697998046875 1 Unmodified _AYLQLLNLF_ ENSG00000144524|ENST00000350033|COPS7B;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B 34.40172386719151 0.0910440009062557 1 {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5 4 48.175 0 0 4.4051 0 0 475.24507338691564 0 475.24507338691564 0 42.69077524932108 0 0 0 1.774227503252014 0 0 0 + {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 4.4051 + + 67 NaN NaN 104079.2 NaN 21683 4788 26472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26474 103.05 NaN 84042 35 0 6622.2 0.261 + 13514 KYPENFFLL 9 36 585.8134875959388 1169.6124222586775 2 585.8142700195312 MULTI HCD FTMS 0 0 0 26472 42263.48828125 0.560048866475219 51 -0.6156082153320312 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.812 0 0 2.4634 0 0 778.3673573224625 0 778.3673573224625 0 24.631068929195408 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4634 + + 11 NaN NaN 96589.2 NaN 21684 4788 26472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26475 103.06 NaN 158630 35 0 28782 0.261 + 16791 LYDTIFQIF 9 36 580.3052949399254 1158.5960369466507 2 580.3058471679688 MULTI HCD FTMS 0 0 0 26472 13033.5078125 0.008528477932449798 40 -0.5173721313476562 3 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 29.081581746732265 0.1154664336125038 1 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 43.488 0 0 3.7535 0 0 605.3052926634559 0 605.3052926634559 0 27.034021960761265 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 3.7535 + + 128 NaN NaN 112940.5 NaN 21685 4788 26472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26476 103.06 NaN 119530 35 0 28325 0.261 + 25660 SHLYTSPLDM 10 38 582.272479350489 1162.530405767778 2 582.77490234375 MULTI HCD FTMS 0 0 0 26472 17614.720703125 0.4812623967769047 16 -0.23104095458984375 4 Unmodified _SHLYTSPLDM_ ENST00000261254.7_1_12:4410147-4410483:+|nuORF 1.4819007175156935 0.4674597685733628 1 M 1 9 5.4846 0 0 0.47178 0 0 616.1827017656279 412.2858980768188 1028.4685998424468 0 0 0 0 0 0 0 0 0 + M 0.47178 + + 1 + NaN NaN 96931.3 NaN 21686 4788 26472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26477 103.06 NaN 32276 35 0 4439.4 0.261 + -1 CRQLDYERK 9 26 634.3126220703125 NaN 0 634.3126220703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))RQLDYERK_ REV__ENSG00000170946|ENST00000465995|DNAJC24;REV__ENST00000527731.1_1_11:31436399-31447922:+|nuORF;REV__ENST00000529086.5_1_11:31392283-31436510:+|nuORF;REV__nc|ENSG00000170946|Q6P3W2-2|DNAJC24 0.5247636613948944 0.2927039108006614 1 Q 1 -1 0.088644 0 0 0.0069985 0 0 651.5449865216812 483.9935396783813 1135.5385262000625 0 0 0 0 0 0 0 0 0 Q 0.0069985 + + 1 + NaN NaN 85144.8 NaN 21687 4788 26472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26479 103.07 NaN 198910 35 0 25971 0.411 + 17638 LYYPFSYLF 9 52 606.8027324096639 1211.5909118861277 2 606.8029174804688 MULTI HCD FTMS 0 0 0 26478 203622.0625 1 0 0 1 Unmodified _LYYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 77.98433622928108 0.006504613272346738 1 [Y{I|L}]YP{M(Oxidation (M))|F}SY{I|L}{M(Oxidation (M))|F} 9 0 + 87.802 0 0 7.2468 7.2468 93.536 0 0 0 22.376430167995878 77.34427538256881 22.376430167995878 21.977437731477423 0 2.274227503252014 1.5228787452803376 0.4247425010840047 0 + + [Y{I|L}]YP{M(Oxidation (M))|F}SY{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}[WD]{[QN]|[E{I|L}]|[KN]}Y{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.2468;5.4329;3.7822;1.7829;1.396;0.13218 +;-;-;-;-;- + 289 NaN NaN 164983.2 NaN 21688 4789 26478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26481 103.08 NaN 133680 35 0 31458 0.327 + 15879 LPLIGVIVI 9 43 468.8281576202992 NaN 0 468.828125 PEAK HCD FTMS 0 0 0 26480 48556.625 0.31166907651047665 1 -0.0159912109375 1 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.13253774575595106 1 V{I|L}V 3 -1 30.445 0 0 3.2539 0 0 131.09460319052 490.30304895572505 621.397652146245 0 0 0 0 0 1.4247425010840047 0 0 0 V{I|L}V 3.2539 + + 12 + NaN NaN 99355.2 NaN 21689 4790 26480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26482 103.08 NaN 206310 35 0 12036 0.261 + 10813 ISYIFMVLF 9 54 566.8088570038957 1131.6031610745913 2 566.8090209960938 MULTI HCD FTMS 0 0 0 26480 49108.23828125 0.4098930158377824 1 -0.0159912109375 2 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 23.1484247019978 0.1603590852062899 1 V{I|L}{M(Oxidation (M))|F} 3 -1 27.945 0 0 2.4695 0 0 754.3730335919937 0 754.3730335919937 0 -1.7474250108400469 -1.7474250108400469 0 0 0.3252574989159953 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.4695 + + 134 NaN NaN 119669.8 NaN 21690 4790 26480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26483 103.08 NaN 81225 35 0 12880 0.261 + 32967 YALVQYALPL 10 35 575.8290797022975 NaN 0 575.8287963867188 PEAK HCD FTMS 0 0 0 26480 9839.2001953125 0.2920568839724375 1 -0.0159912109375 3 Unmodified _YALVQYALPL_ ENSG00000133704|ENST00000256079|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant 3.944395688203298 0.33680843299986807 1 V 1 9 11.99 0 0 1.0429 0 0 703.3910867954168 344.16208826236567 1047.5531750577825 0 0 0 0 0 0.5 0 0 0 + V 1.0429 + + 3 + NaN NaN 95138.3 NaN 21691 4790 26480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26484 103.09 NaN 32178 35 0 6295.1 0.261 + -1 YLYWACLRM 9 21 617.7933981636666 NaN 0 617.7947998046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YLYWACLRM(Oxidation (M))_ REV__ENSG00000103150|ENST00000262430|MLYCD;REV__ENST00000569024.1_1_16:83948407-83949091:+|nuORF;REV__nc|ENSG00000103150|O95822-2|MLYCD 4.3292370932331545 0.2742679634796037 1 Y 1 -1 6.9897 0 0 0.56662 0 0 276.1476326421113 791.3386673924765 1067.4863000345879 0 0 0 0 0 0 0 0 0 Y 0.56662 + + 1 + NaN NaN 94591.5 NaN 21692 4790 26480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26486 103.09 NaN 127880 35 0 13206 0.327 + 29617 VAPIIFLTI 9 46 493.8178774167272 985.6212019002544 2 493.8179016113281 MULTI HCD FTMS 0 0 0 26485 48175.62109375 0.6436195345779782 2 -0.023406982421875 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 30.224811164608877 0.11021837014094292 1 T{I|L} 2 -1 30.217 0 0 3.0657 0 0 753.4797364094081 0 753.4797364094081 0 19.75895023531386 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 3.0657 + + 28 NaN NaN 105287.6 NaN 21693 4791 26485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26487 103.1 NaN 54417 35 0 7606 0.261 + 17810 MFSQNDNINIL 11 35 436.87979378806483 1307.6175519643946 3 437.21466064453125 MULTI HCD FTMS 0 0 0 26485 28219.888671875 0.4819552276055804 -30 0.4210205078125 2 Unmodified _MFSQNDNINIL_ tr|U7SWE8|U7SWE8_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01006PE=4SV=1 0.5059551277355931 0.4167017191902429 1 N 1 10 2.4743 0 0 0.18922 0 0 871.6742058724009 318.8863619440063 1190.5605678164072 0 0 0 0 0 0 0 0 0 + N 0.18922 + + 1 + NaN NaN 84184 NaN 21694 4791 26485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26488 103.1 NaN 93516 35 0 27964 0.261 + 23243 RGGRQEWTAC 10 29 582.272479350489 1162.530405767778 2 582.2743530273438 MULTI HCD FTMS 0 0 0 26485 15676.7392578125 0.2727008941433434 21 -0.3057708740234375 3 Unmodified _RGGRQEWTAC_ REV__ENSG00000180264|ENST00000696331|ADGRD2;REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 1.6526216038709556 0.46655611578153744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98607.9 NaN 21695 4791 26485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26489 103.1 NaN 143160 35 0 12261 0.261 -1 VYCARLFCV 9 39 615.2951920325654 1228.5758311319307 2 615.295166015625 MULTI HCD FTMS 0 0 0 26485 34746.9453125 0.9457627147477315 10 -0.1541290283203125 4 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))VYC(Carbamidomethyl (C))ARLFC(Carbamidomethyl (C))V_ ENST00000563642.6_1_16:1496634-1499487:-|nuORF 4.75600775471527 0.31496297302216103 1 [YN]AWV[{M(Oxidation (M))|F}V]A 8 -1 31.604 0 0 2.5724 0 0 0 275.08996816463633 275.08996816463633 26.11941264025134 0 0 0 0 0 1.6989700043360187 0 0 [YN]AWV[{M(Oxidation (M))|F}V]A 2.5724 - 80 NaN NaN 116659.4 NaN 21696 4791 26485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26491 103.11 NaN 89187 35 0 6844.3 0.327 + 10164 IFSPVFNFF 9 42 559.2894510331361 1116.564349133072 2 559.28857421875 MULTI HCD FTMS 0 0 0 26490 12900.0126953125 0.09894438602318444 -15 0.2395782470703125 1 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 39.94969957227396 0.06557568441294001 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 42.964 0 0 3.8479 0 0 543.305955955275 0 543.305955955275 0 27.47933455448525 0 0 0 1.3494850021680094 0 0 0.3807196863200844 + {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8479 + + 57 NaN NaN 96660.3 NaN 21697 4792 26490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26493 103.12 NaN 884150 35 0 213630 0.327 + 18662 MYIIPVVLF 9 38 555.816975024597 1109.619397115994 2 555.817138671875 MULTI HCD FTMS 0 0 0 26492 420551.84375 0.44139107505491454 12 -0.17183685302734375 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 50.406 0 0 4.5426 0 0 423.1833142075939 0 423.1833142075939 0 46.91122510072759 0 0 0 2.3494850021680094 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.5426 + + 34 + NaN NaN 210901.2 NaN 21698 4793 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26494 103.12 NaN 98659 35 0 17518 0.262 + 6540 FPLAPLLAL 9 36 477.8048796167729 953.5952063003458 2 477.8045349121094 MULTI HCD FTMS 0 0 0 26492 19190.056640625 0.3720588113895719 4 -0.09131622314453125 2 Unmodified _FPLAPLLAL_ ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;ENSG00000171714|ENST00000324559|ANO5;ENSG00000177119|ENST00000320560|ANO6;ENSG00000185101|ENST00000332826|ANO9;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENST00000534161.5_1_11:418373-429524:-|nuORF;nc|ENSG00000134343|Q9BYT9-2|ANO3;nc|ENSG00000151572|Q32M45-2|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000177119|Q4KMQ2-2|ANO6;nc|ENSG00000177119|Q4KMQ2-3|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000185101|A1A5B4-2|ANO9 9.347437153973935 0.2795965555214564 1 A{I|L} 2 7 25.217 0 0 2.6444 0 0 751.4614496450644 0 751.4614496450644 0 23.622731327798547 0 0 0 0.4247425010840047 0 0 0 + A{I|L} 2.6444 + + 4 NaN NaN 106909.1 NaN 21699 4793 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26495 103.12 NaN 232440 35 0 13481 0.261 + 14253 LCIFMFVLF 9 54 566.7987001277102 NaN 0 566.8089599609375 PEAK HCD FTMS 0 0 0 26492 14671.53515625 0.8112629492424042 -13 0.1746063232421875 3 Unmodified _LCIFMFVLF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF 14.581692164780916 0.22376707489839515 1 {I|L} 1 8 13.852 0 0 1.2241 0 0 165.07867629218907 850.3971838302858 1015.4758601224748 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2241 + + 70 NaN NaN 117835 NaN 21700 4793 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26496 103.13 NaN 95088 35 0 14458 0.261 + -1 FCVRRYFL 8 34 580.8066613130949 NaN 0 580.7890014648438 PEAK HCD FTMS 0 0 0 26492 18518.4140625 0.4662422599705741 4 -0.09131622314453125 4 Carbamidomethyl (C) _FC(Carbamidomethyl (C))VRRYFL_ REV__ENST00000459719.6_1_Y:21751496-21752137:+|nuORF 2.577480529830294 0.38822285293237185 1 {M(Oxidation (M))|F}Q 2 -1 7.9588 0 0 0.68634 0 0 606.308011491621 275.14109216861567 881.4491036602367 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Q 0.68634 - 13 + NaN NaN 112272 NaN 21701 4793 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26497 103.13 NaN 27581 35 0 5907.7 0.261 -1 VFWFYCYVG 9 27 620.78076171875 NaN 0 620.78076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _VFWFYC(Carbamidomethyl (C))YVG_ ENST00000290075.10_1_8:23423911-23424199:+|nuORF 0.6014990680409731 0.29233206172879045 1 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.19961 0 0 611.2060569318375 478.2379549615844 1089.444011893422 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.19961 + + 1 + NaN NaN 78757.2 NaN 21702 4793 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26498 103.13 NaN 44814 35 0 7350.9 0.261 + 12445 KQIRLGILHK 10 29 603.3956168603944 NaN 0 603.8236083984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KQIRLGILHK_ ENSG00000176798|ENST00000641819|OR51L1 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97990.1 NaN 21703 4793 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26500 103.14 NaN 103960 35 0 6759.3 0.327 + 10165 IFSPVFNFF 9 39 559.2894510331361 1116.564349133072 2 559.79150390625 MULTI HCD FTMS 0 0 0 26499 22684.9296875 0.2579658650458226 -13 0.18746185302734375 1 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 32.78568957990786 0.09846250359632436 1 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 44.469 0 0 3.9827 0 0 543.3056508448724 0 543.3056508448724 0 35.88554074136319 0 0 0 1.7302046884880937 0 0 0 + {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.9827 + + 56 NaN NaN 96640.7 NaN 21704 4794 26499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26501 103.14 NaN 84393 35 0 8881.1 0.261 + 31302 VWKFLGLL 8 36 488.3052781559481 NaN 0 488.3195495605469 PEAK HCD FTMS 0 0 0 26499 5477.21533203125 1 0 0 2 Unmodified _VWKFLGLL_ ENSG00000232030|ENST00000416929|MAGEB6B 2.8892196856762586 0.38822285293237185 1 RV 2 8 8.5835 0 0 0.88072 0 0 160.09829033363116 556.3147677057249 716.413058039356 0 0 0 0 0 0 0 0 0 RV 0.88072 - 33 + NaN NaN 84821.7 NaN 21705 4794 26499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26502 103.15 NaN 39786 35 0 5318.1 0.261 + 12446 KQIRLGILHK 10 37 603.3956168603944 NaN 0 603.8253784179688 PEAK HCD FTMS 0 0 0 26499 18253.37890625 1 0 0 3 Unmodified _KQIRLGILHK_ ENSG00000176798|ENST00000641819|OR51L1 0.4007161486938917 0.3398413315442166 1 D 1 10 2.2185 0 0 0.18414 0 0 656.4237887971575 430.2963045709594 1086.720093368117 0 0 0 0 0 0 0 0 0 D 0.18414 - 2 + NaN NaN 88949.1 NaN 21706 4794 26499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26504 103.15 NaN 98343 35 0 16879 0.327 + 28026 TFVAGYIAGVF 11 32 572.8056290380515 NaN 0 572.8054809570312 PEAK HCD FTMS 0 0 0 26503 53398.6953125 0.8071740718281076 1 -0.0295867919921875 1 Unmodified _TFVAGYIAGVF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 8.745405648335112 0.31731194618894887 1 {I|L} 1 10 15.797 0 0 1.3813 0 0 392.20848039302 635.2833935452953 1027.4918739383154 0 0 0 0 0 0.8807196863200843 0 0 0 + {I|L} 1.3813 + + 3 + NaN NaN 116403.6 NaN 21707 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26505 103.16 NaN 143790 35 0 20489 0.261 + 33255 YFIPEFNLF 9 42 595.300448713315 1188.5863444934298 2 595.3002319335938 MULTI HCD FTMS 0 0 0 26503 82948.375 0.17319024587833198 21 -0.29803466796875 2 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 26.268140514670165 0.13340543277302316 1 [Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 42.965 0 0 3.6148 3.6148 81.528 0 0 0 4.762036441594191 32.72289319904552 4.762036441594191 4.431890546242336 0 1.3633643341304673 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.6148;3.2419;3.0675;2.8401;2.4672;2.2928 -;+;-;-;-;- + 108 NaN NaN 97790.5 NaN 21708 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26506 103.16 NaN 53382 35 0 7492 0.262 -1 0 28 479.81936183994105 957.6241707466821 2 479.81927490234375 MULTI HCD FTMS 0 0 0 26503 27100.193359375 0.1542424622804991 26 -0.34195709228515625 3 NaN NaN 1 {I|L}P 2 -1 20.969 0 0 2.1897 0 0 0 744.4697970025999 744.4697970025999 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 2.1897 - 1 + NaN NaN 85239.3 NaN 21709 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26507 103.16 NaN 110790 35 0 14087 0.261 + 16994 LYIPIFSTF 9 31 550.8051196357795 1099.595686338359 2 550.8053588867188 MULTI HCD FTMS 0 0 0 26503 45872.2265625 0.13318931292570646 18 -0.26013946533203125 4 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 53.57557251787612 0.02656881086235134 1 [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F} 9 0 + 45.379 0 0 4.1269 4.1269 89.525 0 0 0 7.147642715192504 30.775006193212278 7.147642715192504 45.37909996297415 0 1.3494850021680094 0 0 0 + + [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F} 4.1269 + + 37 NaN NaN 101222.7 NaN 21710 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26508 103.17 NaN 33207 35 0 5284.6 0.261 + 20654 PFIKQRHV 8 26 512.806367188147 1023.598181443094 2 512.80615234375 MULTI HCD FTMS 0 0 0 26503 16560.3515625 0.4478332779279024 1 -0.0295867919921875 5 Unmodified _PFIKQRHV_ ENST00000357028.6_1_9:134735773-134735821:-|nuORF 2.302733041254933 0.5385759549224092 1 N 1 8 3.9794 0 0 0.38877 0 0 471.2866712886002 435.23981653385005 906.5264878224502 0 0 0 0 0 0 0 0 0 N 0.38877 - 1 + NaN NaN 99308.2 NaN 21711 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26509 103.17 NaN 148480 35 0 14555 0.261 + 10166 IFSPVFNFF 9 39 559.2894510331361 1116.564349133072 2 559.8265380859375 MULTI HCD FTMS 0 0 0 26503 37042.328125 0.4212336714158849 -12 0.168121337890625 6 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 56.17704186161178 0.022929533404884107 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 67.413 0 0 6.0375 6.0375 89.933 0 0 0 7.147642715192504 67.41312192373542 7.147642715192504 13.455612550363796 0 2.3494850021680094 0 0.3807196863200844 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[TA]{[RE]|[WV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.0375;4.8325;3.1472 +;-;- + 95 NaN NaN 107141.3 NaN 21712 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26510 103.17 NaN 64935 35 0 5875.3 0.261 + 5682 FPAEAQALTL 10 37 530.7885475225039 1059.5625421118077 2 530.78857421875 MULTI HCD FTMS 0 0 0 26503 4428.57373046875 0.1487801812490744 -11 0.1551971435546875 7 Unmodified _FPAEAQALTL_ REV__ENST00000492979.2_1_7:76019335-76019617:-|nuORF 2.9952420565917617 0.4594494122822477 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.37557 0 0 554.2728215080953 355.19928919010005 909.4721106981954 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.37557 + + 3 + NaN NaN 91941.6 NaN 21713 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26511 103.18 NaN 25409 35 0 4600.8 0.261 -1 RYPRPVLCF 9 25 604.325439453125 NaN 0 604.325439453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _RYPRPVLC(Carbamidomethyl (C))F_ ENST00000562539.1_1_16:74949913-74949994:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81841.1 NaN 21714 4795 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26513 103.18 NaN 266670 35 0 63240 0.327 + -1 VQNCFTTIWK 10 45 432.88520627292405 NaN 0 432.8851318359375 PEAK HCD FTMS 0 0 0 26512 151352.75 0.5217021883475271 217 -2.2308578491210938 1 Carbamidomethyl (C) _VQNC(Carbamidomethyl (C))FTTIWK_ REV__ENSG00000095110|ENST00000534921|NXPE1;REV__nc|ENSG00000095110|Q8N323-2|NXPE1 0.5631705045366581 0.3397022931312153 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 123818.4 NaN 21715 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26514 103.19 NaN 190960 35 0 39610 0.261 + 32223 VYTLDIPVLF 10 38 590.3366498532699 1178.6587467733398 2 590.3368530273438 MULTI HCD FTMS 0 0 0 26512 83769.109375 0.5017349893798697 1 -0.02626800537109375 2 Unmodified _VYTLDIPVLF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 20.453626601364224 0.3197956946484955 1 {I|L}{M(Oxidation (M))|F} 2 8 25.969 0 0 2.2033 0 0 900.4951289155399 0 900.4951289155399 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2033 + + 9 NaN NaN 118024.9 NaN 21716 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26515 103.19 NaN 59596 35 0 5365.3 0.262 + 16986 LYIIGVALL 9 27 487.8179856128217 973.6214182924434 2 487.8179626464844 MULTI HCD FTMS 0 0 0 26512 23706.69921875 0.40299273274866143 2 -0.03594207763671875 3 Unmodified _LYIIGVALL_ REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1 14.581692164780916 0.23437375358055648 1 V[{I|L}A]{I|L} 4 -1 25.445 0 0 2.6135 0 0 559.336889946987 0 559.336889946987 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 V[{I|L}A]{I|L} 2.6135 + + 8 NaN NaN 111414.4 NaN 21717 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26516 103.19 NaN 71084 35 0 7520.8 0.261 + 122 AEAIGRRYAY 10 34 585.305247198791 NaN 0 585.3050537109375 PEAK HCD FTMS 0 0 0 26512 29741.447265625 0.8581530855169593 1 -0.02626800537109375 4 Unmodified _AEAIGRRYAY_ REV__ENSG00000086205|ENST00000256999|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1;REV__nc|ENSG00000086205|Q04609-6|FOLH1;REV__nc|ENSG00000086205|Q04609-7|FOLH1;REV__nc|ENSG00000086205|Q04609-8|FOLH1;REV__nc|ENSG00000086205|Q04609-9|FOLH1 3.2813086475875832 0.33737594360511275 1 {I|L}{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.68106 0 0 130.07648453254438 775.3477877252561 905.4242722578006 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.68106 - 6 + NaN NaN 98563 NaN 21718 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26517 103.2 NaN 30897 35 0 6683.1 0.261 + -1 YLYWACLRM 9 25 617.7933981636666 NaN 0 617.79296875 PEAK HCD FTMS 0 0 0 26512 4314.259765625 0.20088559139221682 5 -0.065673828125 5 Oxidation (M) _YLYWACLRM(Oxidation (M))_ REV__ENSG00000103150|ENST00000262430|MLYCD;REV__ENST00000569024.1_1_16:83948407-83949091:+|nuORF;REV__nc|ENSG00000103150|O95822-2|MLYCD 4.3292370932331545 0.2742679634796037 1 Y 1 -1 11.99 0 0 0.97195 0 0 276.14769613026425 791.3391207330686 1067.486816863333 0 0 0 0 0 0.5 0 0 0 Y 0.97195 + + 1 + NaN NaN 82558.8 NaN 21719 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26518 103.2 NaN 31865 35 0 5522.3 0.261 + -1 AMRMMIMVPH 10 25 624.7874014022138 NaN 0 624.7864990234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _AM(Oxidation (M))RM(Oxidation (M))MIMVPH_ REV__ENST00000492267.1_1_3:82855892-82856129:-|nuORF 3.944395688203298 0.33680843299986807 1 {I|L} 1 -1 6.5938 0 0 0.52854 0 0 652.2569184276714 479.19867883853755 1131.455597266209 0 0 0 0 0 0.5 0 0 0 {I|L} 0.52854 + + 1 + NaN NaN 90784.8 NaN 21720 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26519 103.2 NaN 40439 35 0 5229.2 0.262 + 6532 FPKIGAHVR 9 32 512.806367188147 1023.598181443094 2 512.8074951171875 MULTI HCD FTMS 0 0 0 26512 8558.6376953125 0.23144694478397215 2 -0.03594207763671875 7 Unmodified _FPKIGAHVR_ REV__ENSG00000171448|ENST00000373656|ZBTB26 1.844237919475145 0.33703635659052655 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92482.5 NaN 21721 4796 26512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26521 103.21 NaN 85224 35 0 12217 0.327 + 17639 LYYPFSYLF 9 28 606.8027324096639 1211.5909118861277 2 606.8023681640625 MULTI HCD FTMS 0 0 0 26520 46625.62109375 0.22898118465797387 8 -0.0805206298828125 1 Unmodified _LYYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 53.57557251787612 0.02656881086235134 1 SY{I|L}{M(Oxidation (M))|F} 4 5 36.146 0 0 2.9834 0 0 683.3354860821215 0 683.3354860821215 0 3.6991128507179383 0 0 0 0.8494850021680094 0 0.3494850021680094 0 + SY{I|L}{M(Oxidation (M))|F} 2.9834 + + 46 NaN NaN 96884.5 NaN 21722 4797 26520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26522 103.21 NaN 35596 35 0 6367 0.261 + -1 YNIKHFFMK 9 26 622.3158580578915 NaN 0 622.315185546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 4.3292370932331545 0.2742679634796037 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88338 NaN 21723 4797 26520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26524 103.22 NaN 29631 35 0 5436.9 0.327 -1 DYMNLLGMIF 10 26 624.7874014022138 NaN 0 624.7884521484375 PEAK HCD FTMS 0 0 0 26523 10676.3779296875 0.4125603258395352 8 -0.07787322998046875 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 8.155526934196011 0.33320428830121973 1 {I|L} 1 -1 12.659 0 0 1.0147 0 0 482.2221894237651 649.2321261041624 1131.4543155279275 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.0147 + + 3 + NaN NaN 94809 NaN 21724 4798 26523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26525 103.22 NaN 61812 35 0 8263.7 0.261 -1 GSVMLPDCRG 10 35 546.2533482241361 1090.492143515072 2 546.2564086914062 MULTI HCD FTMS 0 0 0 26523 4381.19921875 0.28075021452008075 1 -0.00943756103515625 2 Carbamidomethyl (C) _GSVMLPDC(Carbamidomethyl (C))RG_ ENST00000382214.7_1_20:388725-389346:+|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96456.4 NaN 21725 4798 26523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26527 103.23 NaN 145450 35 0 10255 0.411 + 14254 LCIFMFVLF 9 64 566.7987001277102 NaN 0 566.8092651367188 PEAK HCD FTMS 0 0 0 26526 13963.736328125 0.7721251931276056 -8 0.1338348388671875 1 Unmodified _LCIFMFVLF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF 20.871210003555333 0.18155047927120396 1 {I|L} 1 8 10.713 0 0 0.94676 0 0 165.07922560859532 850.396726066614 1015.4759516752092 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 0.94676 + + 80 NaN NaN 132250 NaN 21726 4799 26526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26529 103.23 NaN 504560 35 0 122630 0.327 + 18663 MYIIPVVLF 9 31 555.816975024597 1109.619397115994 2 555.817138671875 MULTI HCD FTMS 0 0 0 26528 243175.0625 0.25522489999408315 19 -0.2376251220703125 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 49.085 0 0 4.4236 0 0 423.1850231919689 0 423.1850231919689 0 49.085390679490075 0 0 0 2.305462187404089 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.4236 + + 35 + NaN NaN 160434.2 NaN 21727 4800 26528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26530 103.24 NaN 98638 35 0 11930 0.261 + 29618 VAPIIFLTI 9 40 493.8178774167272 985.6212019002544 2 493.8175354003906 MULTI HCD FTMS 0 0 0 26528 36476.82421875 0.4873252506878501 11 -0.1416015625 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 24.67388899826682 0.14717941214954053 1 T{I|L} 2 -1 30.217 0 0 3.0657 0 0 753.4778683981383 0 753.4778683981383 0 26.237125054200234 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 3.0657 + + 13 NaN NaN 102036.1 NaN 21728 4800 26528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26531 103.24 NaN 83564 35 0 11178 0.261 + 13515 KYPENFFLL 9 31 585.8134875959388 1169.6124222586775 2 585.8131103515625 MULTI HCD FTMS 0 0 0 26528 33910.828125 0.44936472650478815 63 -0.6561355590820312 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.812 0 0 2.4634 0 0 778.3641224591812 0 778.3641224591812 0 9.348331157524967 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4634 + + 10 NaN NaN 91896.3 NaN 21729 4800 26528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26533 103.25 NaN 62385 35 0 5750.3 0.327 + 13516 KYPENFFLL 9 31 585.8134875959388 1169.6124222586775 2 585.8148193359375 MULTI HCD FTMS 0 0 0 26532 25088.673828125 0.3324591487882818 64 -0.6623382568359375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4352894513687 0 925.4352894513687 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 4 NaN NaN 100180.2 NaN 21730 4801 26532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26534 103.25 NaN 41977 35 0 6105.1 0.261 + 15442 LPDLEELFL 9 28 544.7976082613426 1087.580663589485 2 544.7980346679688 MULTI HCD FTMS 0 0 0 26532 13302.470703125 0.24587033615050755 -7 0.10825347900390625 2 Unmodified _LPDLEELFL_ ENSG00000154114|ENST00000683345|TBCEL;ENST00000533134.1_1_11:120924418-120928239:+|nuORF 7.289230182591677 0.29575926068275815 1 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.3878 0 0 809.4177113263687 0 809.4177113263687 0 25.969100130080562 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.3878 + + 6 NaN NaN 104592.7 NaN 21731 4801 26532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26535 103.25 NaN 76623 35 0 9110.6 0.261 -1 0 36 616.3861319069708 615.3788554403708 1 616.2730102539062 MULTI HCD FTMS 0 0 0 26532 5091.94189453125 0.007066745765342712 -32 0.4898681640625 3 NaN NaN 1 D 1 -1 3.9794 0 0 0.64666 0 0 54.02242341087703 443.30070322681826 497.3231266376953 0 0 0 0 0 0 0 0 0 D 0.64666 - 1 + NaN NaN 88638.9 NaN 21732 4801 26532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26537 103.26 NaN 450810 35 0 40240 0.327 + 10167 IFSPVFNFF 9 53 559.2894510331361 1116.564349133072 2 559.28955078125 MULTI HCD FTMS 0 0 0 26536 118672.8125 0.9102323267266009 -5 0.0523529052734375 1 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 88.95385435242217 0.004553379958619559 1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 73.893 0 0 6.6178 6.6178 87.778 0 0 0 5.6424927368725974 65.93372183701504 5.6424927368725974 8.010299956639813 0 2.9247425010840047 0 0.7059771852360797 0.7742275032520141 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6178;5.9004;5.0998;4.3824 +;-;-;- + 171 NaN NaN 147546.9 NaN 21733 4802 26536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26538 103.26 NaN 99624 35 0 17365 0.262 + 15880 LPLIGVIVI 9 38 468.8281576202992 NaN 0 468.8281555175781 PEAK HCD FTMS 0 0 0 26536 15133.634765625 0.09713784620840488 13 -0.18041229248046875 2 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 20.871210003555333 0.18155047927120396 1 V{I|L}V 3 -1 21.995 0 0 2.3508 0 0 131.09429787426376 490.30353723697505 621.3978351112388 0 0 0 0 0 0.8807196863200843 0 0 0 V{I|L}V 2.3508 + + 10 + NaN NaN 108909.3 NaN 21734 4802 26536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26539 103.27 NaN 117750 35 0 11411 0.261 + 13793 KYPSPFFVF 9 54 566.2973706184383 NaN 0 566.2971801757812 PEAK HCD FTMS 0 0 0 26536 30109.67578125 0.5969075264114229 54 -0.5625762939453125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.90604991867851 0.22786006501039813 1 V 1 8 8.4113 0 0 0.74398 0 0 165.07910262397837 863.4077242486936 1028.486826872672 0 0 0 0 0 0.3807196863200844 0 0 0 + V 0.74398 + + 11 + NaN NaN 104098.7 NaN 21735 4802 26536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26541 103.27 NaN 89089 35 0 6763.7 0.411 + 16995 LYIPIFSTF 9 50 550.8051196357795 1099.595686338359 2 550.8052368164062 MULTI HCD FTMS 0 0 0 26540 14862.1337890625 0.0431519796685291 26 -0.3014068603515625 1 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 23.1484247019978 0.1603590852062899 1 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F} 6 3 24.423 0 0 2.2211 0 0 0 350.13612407335535 350.13612407335535 24.423487412610356 0 0 0 0 1.1747425010840047 0 0 0 + [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F} 2.2211 + + 29 NaN NaN 129077.4 NaN 21736 4803 26540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26543 103.28 NaN 66463 35 0 13914 0.411 + 8058 GHSGLSSNF 9 42 453.2094743343307 NaN 0 453.20941162109375 PEAK HCD FTMS 0 0 0 26542 39634.87109375 0.7026005881568024 42 -0.43648529052734375 1 Unmodified _GHSGLSSNF_ ENSG00000043355|ENST00000376335|ZIC2 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105557.5 NaN 21737 4804 26542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26546 103.29 NaN 103910 35 0 44391 0.327 + -1 MKQCQVRVI 9 34 589.312148865561 1176.6097447979218 2 589.3114624023438 MULTI HCD FTMS 0 0 0 26545 26711.603515625 0.24226714803336982 -27 0.3764190673828125 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))KQC(Carbamidomethyl (C))QVRVI_ REV__ENST00000262039.8_1_18:39593472-39593538:+|nuORF 4.3292370932331545 0.3181982124262546 1 V{I|L} 2 -1 25.969 0 0 2.2071 0 0 946.4462302600643 0 946.4462302600643 0 22.47425010840047 0 0 0 0.5 0 0 0 V{I|L} 2.2071 + + 6 NaN NaN 99736.4 NaN 21738 4806 26545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26547 103.3 NaN 215730 35 0 31403 0.261 + 11001 IYEPNFIFF 9 42 595.300448713315 1188.5863444934298 2 595.29931640625 MULTI HCD FTMS 0 0 0 26545 19733.345703125 0.04120180768250547 32 -0.36310577392578125 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 13.042465956692817 0.2476723265019929 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 31.44 0 0 2.6452 0 0 763.3529069862582 0 763.3529069862582 0 23.764100213633768 0 0 0 0.6747425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6452 + + 11 NaN NaN 123066 NaN 21739 4806 26545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26548 103.3 NaN 111720 35 0 22711 0.261 + 31781 VYLSLIPII 9 32 515.830925834195 NaN 0 515.8304443359375 PEAK HCD FTMS 0 0 0 26545 26968.478515625 0.7633941415765397 -4 0.03519439697265625 3 Unmodified _VYLSLIPII_ ENSG00000127526|ENST00000595753|SLC35E1;ENST00000488894.1_1_19:16677303-16683001:-|nuORF;nc|ENSG00000127526|Q96K37-3|SLC35E1 15.847184025352803 0.21527282152051216 1 {I|L}{I|L} 2 7 16.281 0 0 1.5813 0 0 341.23105338391207 459.22483240299067 800.4558857869027 0 0 0 0 0 0.8807196863200843 0 0 0 + {I|L}{I|L} 1.5813 + + 8 + NaN NaN 107223.2 NaN 21740 4806 26545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26549 103.31 NaN 67579 35 0 11290 0.261 + 30949 VRLSLELFL 9 28 545.3348875673521 NaN 0 545.335205078125 PEAK HCD FTMS 0 0 0 26545 6187.73291015625 0.334512874459763 1 -0.01911163330078125 4 Unmodified _VRLSLELFL_ REV__ENST00000489337.5_1_22:31484532-31494796:+|nuORF;REV__ENST00000493335.5_1_22:31492537-31494796:+|nuORF 2.0597508629832335 0.2852655770354268 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.64205 0 0 132.17035947376763 806.3938558610316 938.5642153347992 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.64205 + + 1 + NaN NaN 103278.2 NaN 21741 4806 26545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26550 103.31 NaN 79616 35 0 9132.9 0.261 + 31048 VSTFLAIFY 9 46 530.7885475225039 1059.5625421118077 2 531.2905883789062 MULTI HCD FTMS 0 0 0 26545 15646.740234375 0.6603010052961688 -4 0.03519439697265625 5 Unmodified _VSTFLAIFY_ tr|U7STE6|U7STE6_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01457PE=4SV=1 2.302733041254933 0.33356062215410776 1 {M(Oxidation (M))|F}{I|L} 2 7 5.5732 0 0 0.52599 0 0 462.2126738649254 334.17429529361567 796.3869691585411 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L} 0.52599 + + 8 + NaN NaN 98279.9 NaN 21742 4806 26545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26552 103.31 NaN 121010 35 0 26190 0.327 + 32224 VYTLDIPVLF 10 30 590.3366498532699 1178.6587467733398 2 590.3370971679688 MULTI HCD FTMS 0 0 0 26551 42231.52734375 0.2529456870367029 12 -0.15761566162109375 1 Unmodified _VYTLDIPVLF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 14.838274106304384 0.3723198072575719 1 {I|L}{M(Oxidation (M))|F} 2 8 21.454 0 0 1.8202 0 0 900.4957142560562 0 900.4957142560562 0 14.463950151760656 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.8202 + + 6 NaN NaN 97554.6 NaN 21743 4807 26551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26553 103.32 NaN 93628 35 0 7232.3 0.261 + -1 GFSALLCLHD 10 33 566.7757108912751 1131.5368688493502 2 566.7748413085938 MULTI HCD FTMS 0 0 0 26551 22561.4140625 0.6735638760195637 1 -0.01958465576171875 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.42334543440173333 1 SW 2 -1 29.776 0 0 2.6315 0 0 840.4153611362627 0 840.4153611362627 0 12.786596949921218 0 0 0 0.8807196863200843 0 0 0 SW 2.6315 - 26 + NaN NaN 100135.8 NaN 21744 4807 26551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26554 103.32 NaN 291540 35 0 43765 0.261 + 19492 NQLTGHNLFF 10 45 595.8029563520842 NaN 0 595.8020629882812 PEAK HCD FTMS 0 0 0 26551 28279.544921875 0.7003111832702983 -3 0.0336761474609375 3 Unmodified _NQLTGHNLFF_ SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant 3.944395688203298 0.33680843299986807 1 {M(Oxidation (M))|F}{I|L} 2 9 9.464 0 0 0.79556 0 0 166.08421424834984 760.3338717096311 926.418085957981 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.79556 - 27 + NaN NaN 139183.7 NaN 21745 4807 26551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26555 103.33 NaN 76764 35 0 10367 0.261 + 35059 YTNLFLNFL 9 33 572.8056290380515 NaN 0 572.8064575195312 PEAK HCD FTMS 0 0 0 26551 15163.18359375 0.22920651097592012 12 -0.15761566162109375 4 Unmodified _YTNLFLNFL_ tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1 5.731851221503515 0.26747109115447115 1 {I|L} 1 8 15.797 0 0 1.3813 0 0 392.20670568260067 635.2838125110195 1027.4905181936201 0 0 0 0 0 0.8807196863200843 0 0 0 + {I|L} 1.3813 + + 5 + NaN NaN 97239.5 NaN 21746 4807 26551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26556 103.33 NaN 58544 35 0 6300.1 0.261 + 32144 VYSLLLVVF 9 32 526.8219996314841 NaN 0 526.8220825195312 PEAK HCD FTMS 0 0 0 26551 12537.9853515625 0.8735735254543704 -1 0.01911163330078125 5 Unmodified _VYSLLLVVF_ REV__ENSG00000177535|ENST00000641149|OR2B11;REV__ENSG00000181927|ENST00000641760|OR4P4 12.531546534597751 0.23452071659215576 1 P 1 -1 10.485 0 0 0.99698 0 0 591.3631937436338 360.1892489068969 951.5524426505308 0 0 0 0 0 0.5 0 0 0 P 0.99698 - 5 + NaN NaN 97991.9 NaN 21747 4807 26551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26558 103.33 NaN 48998 35 0 6003.1 0.327 + 33788 YLGLLVLAI 9 34 487.81779967109463 NaN 0 487.8177185058594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YLGLLVLAI_ REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1 9.347437153973935 0.2499504662953367 1 V 1 -1 11.237 0 0 1.1542 0 0 315.2152979732455 556.3109330681247 871.5262310413702 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.1542 + + 4 + NaN NaN 101164.9 NaN 21748 4808 26557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26559 103.34 NaN 67099 35 0 9163.2 0.261 + 23814 RRREVCLE 8 37 530.7885475225039 1059.5625421118077 2 531.2908325195312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RRREVCLE_ ENST00000529307.1_1_11:34074563-34074728:+|nuORF 2.0597508629832335 0.5389364538378849 1 {I|L} 1 7 9.6041 0 0 0.90642 0 0 149.10795003757806 794.3479708307249 943.4559208683029 0 0 0 0 0 0.2614393726401688 0 0 0 + {I|L} 0.90642 + + 7 + NaN NaN 93253.3 NaN 21749 4808 26557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26560 103.34 NaN 74350 35 0 8920.6 0.261 -1 SKRCYMLK 8 38 551.2824882253585 NaN 0 550.80517578125 PEAK HCD FTMS 0 0 0 26557 11579.263671875 0.7871305916806434 -4 0.05326080322265625 3 Carbamidomethyl (C),Oxidation (M) _SKRC(Carbamidomethyl (C))YM(Oxidation (M))LK_ ENST00000488995.1_1_2:118860178-118860235:+|nuORF 4.75600775471527 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.63511 0 0 354.1130429822775 596.3476656549436 950.4607086372212 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63511 + + 5 + NaN NaN 100643.6 NaN 21750 4808 26557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26561 103.34 NaN 43226 35 0 6297 0.261 + 27982 TFFLFHGL 8 36 491.2618625000545 NaN 0 491.2606201171875 PEAK HCD FTMS 0 0 0 26557 19153.65625 0.7843499083814753 -2 0.0386962890625 4 Unmodified _TFFLFHGL_ ENST00000508798.5_1_4:99392964-99393330:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86202.3 NaN 21751 4808 26557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26563 103.35 NaN 245100 35 0 59799 0.327 + 12360 KNTAYFYSRF 10 51 432.88520627292405 NaN 0 432.8851318359375 PEAK HCD FTMS 0 0 0 26562 143338.140625 0.4940763985968414 230 -2.2990264892578125 1 Unmodified _KNTAYFYSRF_ ENSG00000083782|ENST00000261172|EPYC 0.6268255596534771 0.33964781322640114 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115006.5 NaN 21752 4809 26562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26564 103.35 NaN 40625 35 0 4582.6 0.261 + 12301 KLQASTFTT 9 32 498.7712187576414 NaN 0 498.771240234375 PEAK HCD FTMS 0 0 0 26562 13700.029296875 0.4486411435617249 -4 0.061920166015625 2 Unmodified _KLQASTFTT_ REV__ENSG00000109132|ENST00000226382|PHOX2B;REV__ENSG00000165462|ENST00000298231|PHOX2A 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95385.8 NaN 21753 4809 26562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26565 103.36 NaN 62497 35 0 10651 0.261 + 34008 YLYLKELNR 9 35 606.3454897969725 NaN 0 606.3458862304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YLYLKELNR_ REV__ENSG00000131951|ENST00000570145|LRRC9;REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9;REV__nc|ENSG00000131951|Q6ZRR7|LRRC9 2.302733041254933 0.2840881193086663 1 Y 1 -1 6.9897 0 0 0.57734 0 0 275.2382685570324 769.3570650690061 1044.5953336260386 0 0 0 0 0 0 0 0 0 Y 0.57734 + + 4 + NaN NaN 90832.1 NaN 21754 4809 26562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26567 103.36 NaN 202690 35 0 20552 0.327 + 6691 FPNLEVEFF 9 57 571.2820154083932 1140.5494778835864 2 571.2820434570312 MULTI HCD FTMS 0 0 0 26566 23365.85546875 0.38124578108883805 1 -0.0129241943359375 1 Unmodified _FPNLEVEFF_ tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 6 35.539 0 0 3.1159 0 0 600.2909548112304 0 600.2909548112304 0 22.351205051725017 0 0 0 1.1382104921644451 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.1159 - 87 NaN NaN 113600.2 NaN 21755 4810 26566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26568 103.37 NaN 144300 35 0 26743 0.261 + 10520 IPFADALDLF 10 35 561.2974293221916 1120.5803057111832 2 561.7994384765625 MULTI HCD FTMS 0 0 0 26566 40995.01171875 0.22141840215875455 -12 0.14565277099609375 2 Unmodified _IPFADALDLF_ ENSG00000146143|ENST00000615550|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENST00000490313.1_1_6:57244770-57299810:+|nuORF 29.081581746732265 0.240155558137004 1 {I|L}D{I|L}{M(Oxidation (M))|F} 4 6 48.32 0 0 4.3121 0 0 614.3044300763687 0 614.3044300763687 0 45.84605507340511 0 0 0 1.6382104921644451 0 0 0 + {I|L}D{I|L}{M(Oxidation (M))|F} 4.3121 + + 32 NaN NaN 106684.4 NaN 21756 4810 26566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26569 103.37 NaN 106560 35 0 12891 0.261 + 17640 LYYPFSYLF 9 48 606.8027324096639 1211.5909118861277 2 606.8033447265625 MULTI HCD FTMS 0 0 0 26566 20494.099609375 0.10064773609379878 21 -0.2330780029296875 3 Unmodified _LYYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 34.10243960390752 0.09241788333544565 1 [Y{I|L}]Y 3 6 32.548 0 0 2.6864 0 0 0 769.357549419584 769.357549419584 28.56878100893148 0 0 0 0 0.9247425010840047 2 0 0 + [Y{I|L}]Y 2.6864 + + 14 NaN NaN 102666.1 NaN 21757 4810 26566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26571 103.38 NaN 345020 35 0 63017 0.327 + 18664 MYIIPVVLF 9 57 555.816975024597 1109.619397115994 2 555.8174438476562 MULTI HCD FTMS 0 0 0 26570 113515.5078125 0.11914044076465644 30 -0.30374908447265625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 1 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 44.169 0 0 3.9805 0 0 423.18321425605626 0 423.18321425605626 0 39.56485629844558 0 0 0 1.9247425010840047 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 3.9805 + + 25 NaN NaN 142233.5 NaN 21758 4811 26570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26572 103.38 NaN 60829 35 0 15113 0.261 + 3693 ELRHRRIVRQR 11 27 506.9787247548477 1517.914344864743 3 506.9781494140625 MULTI HCD FTMS 0 0 0 26570 45309.98046875 0.49545209484949765 -4 0.06159210205078125 2 Unmodified _ELRHRRIVRQR_ REV__ENSG00000005810|ENST00000544440|MYCBP2;REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;REV__nc|ENSG00000005810|O75592-2|MYCBP2 0.08335046087909445 0.4185551196980541 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95405.4 NaN 21759 4811 26570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26573 103.38 NaN 98661 35 0 12372 0.261 + -1 VDTYNDSMYIW 11 30 474.86801100823345 1421.5822036249003 3 474.86785888671875 MULTI HCD FTMS 0 0 0 26570 22377.83203125 0.36407505530183615 -3 0.0420074462890625 3 Oxidation (M) _VDTYNDSM(Oxidation (M))YIW_ REV__ENSG00000135636|ENST00000410020|DYSF;REV__nc|ENSG00000135636|O75923-10|DYSF;REV__nc|ENSG00000135636|O75923-11|DYSF;REV__nc|ENSG00000135636|O75923-12|DYSF;REV__nc|ENSG00000135636|O75923-14|DYSF;REV__nc|ENSG00000135636|O75923-15|DYSF;REV__nc|ENSG00000135636|O75923-2|DYSF;REV__nc|ENSG00000135636|O75923-3|DYSF;REV__nc|ENSG00000135636|O75923-4|DYSF;REV__nc|ENSG00000135636|O75923-5|DYSF;REV__nc|ENSG00000135636|O75923-6|DYSF;REV__nc|ENSG00000135636|O75923-7|DYSF;REV__nc|ENSG00000135636|O75923-8|DYSF;REV__nc|ENSG00000135636|O75923-9|DYSF;REV__nc|ENSG00000135636|O75923|DYSF 2.4347853303010236 0.4082425251555256 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 100174.4 NaN 21760 4811 26570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26574 103.39 NaN 55629 35 0 9065.2 0.261 + 10405 INTKYNIIN 9 26 546.8079143641883 NaN 0 546.8079833984375 PEAK HCD FTMS 0 0 0 26570 21447.1640625 0.27312328765487837 -10 0.12884521484375 4 Unmodified _INTKYNIIN_ REV__ENSG00000248746|ENST00000513398|ACTN3 10.073929032068715 0.24642998803896465 1 KGN 3 -1 15.662 0 0 1.4348 0 0 434.2185986484952 355.19862058482227 789.4172192333174 0 0 0 0 0 0.8494850021680094 0 0 0 KGN 1.4348 - 7 + NaN NaN 92638 NaN 21761 4811 26570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26575 103.39 NaN 92546 35 0 7098.9 0.261 + 14488 LFALIVPTL 9 36 493.81799797669026 985.6214430201805 2 493.8180236816406 MULTI HCD FTMS 0 0 0 26570 13937.62890625 0.2249314258635588 -1 0.0129241943359375 5 Unmodified _LFALIVPTL_ REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant 12.531546534597751 0.2520865569484384 1 T{I|L} 2 -1 30.217 0 0 3.0657 0 0 753.4799671857437 0 753.4799671857437 0 30.21652514092061 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 3.0657 + + 8 NaN NaN 92362.4 NaN 21762 4811 26570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26576 103.39 NaN 58139 35 0 5968.8 0.261 + 34637 YPSEKDKI 8 42 490.2576094927359 NaN 0 490.2570495605469 PEAK HCD FTMS 0 0 0 26570 15205.4794921875 0.539396747949567 -7 0.09526824951171875 6 Unmodified _YPSEKDKI_ tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91332.4 NaN 21763 4811 26570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26578 103.4 NaN 74614 35 0 6541.9 0.327 + 13517 KYPENFFLL 9 38 585.8133303080541 1169.6121076829081 2 585.8141479492188 MULTI HCD FTMS 0 0 0 26577 28591.59375 0.5834329840814406 -20 0.28948974609375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 1 {M(Oxidation (M))|F}MK{I|L} 4 7 31.938 0 0 2.7307 0 0 632.3146839826187 0 632.3146839826187 0 30.828956512079344 0 0 0 0 0 0 0 {M(Oxidation (M))|F}MK{I|L} 2.7307 - 15 NaN NaN 112938.8 NaN 21764 4812 26577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26579 103.4 NaN 73372 35 0 14717 0.261 + 15443 LPDLEELFL 9 33 544.7976082613426 1087.580663589485 2 544.7979125976562 MULTI HCD FTMS 0 0 0 26577 26112.376953125 0.4826365749969568 3 -0.041717529296875 2 Unmodified _LPDLEELFL_ ENSG00000154114|ENST00000683345|TBCEL;ENST00000533134.1_1_11:120924418-120928239:+|nuORF 14.838274106304384 0.23215694253501695 1 {M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F}{I|L} 5 5 38.672 0 0 3.5558 0 0 420.210741111525 0 420.210741111525 0 38.672137691284405 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F}{I|L} 3.5558 - 15 NaN NaN 104219.7 NaN 21765 4812 26577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26581 103.41 NaN 359480 35 0 139140 0.327 -1 0 32 637.3651890593159 636.3579125927158 1 637.3763427734375 MULTI HCD FTMS 0 0 0 26580 36874.5390625 0.23383797718901836 -17 0.23055267333984375 1 NaN NaN 1 Q 1 -1 5.4846 0 0 0.86187 0 0 121.9929310438891 383.2719820611938 505.2649131050829 0 0 0 0 0 0 0 0 0 Q 0.86187 - 1 + NaN NaN 130677.1 NaN 21766 4813 26580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26582 103.42 NaN 105420 35 0 12826 0.261 -1 CLGVVMVCVVL 11 46 624.8287113148915 NaN 0 624.8264770507812 PEAK HCD FTMS 0 0 0 26580 19884.6640625 0.8960946497656772 1 -0.01239776611328125 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LGVVMVC(Carbamidomethyl (C))VVL_ ENSG00000174106|ENST00000308330|LEMD3 3.5964929083625545 0.33191792882328314 1 V 1 -1 6.9897 0 0 0.56023 0 0 131.09513184816484 1014.4566555067237 1145.5517873548886 0 0 0 0 0 0 0 0 0 V 0.56023 + + 2 + NaN NaN 95705.2 NaN 21767 4813 26580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26583 103.42 NaN 32598 35 0 4368.9 0.261 + -1 YNIKHFFMK 9 25 622.3169036899453 NaN 0 622.3162841796875 PEAK HCD FTMS 0 0 0 26580 14740.69140625 0.8889243018503469 2 -0.02848052978515625 3 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 6.723162845929126 0.26266733336404485 1 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4293263234468 274.08320032291255 1126.5125266463594 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 2 + NaN NaN 85367.6 NaN 21768 4813 26580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26585 103.42 NaN 202730 35 0 47298 0.327 -1 SSLVLLLCLTC 11 35 639.8436370537548 1277.6727211743096 2 639.843505859375 MULTI HCD FTMS 0 0 0 26584 21688.916015625 0.0991729689426687 -16 0.20700836181640625 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 1 M 1 -1 7.7642 0 0 0.60768 0 0 701.3159229338784 442.2959267221246 1143.611849656003 0 0 0 0 0 0.5 0 0 0 M 0.60768 - 2 + NaN NaN 113865.1 NaN 21769 4814 26584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26586 103.43 NaN 183780 35 0 48525 0.261 + -1 FMLFIIIIHT 10 35 632.361973574362 1262.7093942155238 2 632.3619384765625 MULTI HCD FTMS 0 0 0 26584 21830.9375 0.0907402037397423 -14 0.190032958984375 2 Oxidation (M) _FM(Oxidation (M))LFIIIIHT_ REV__ENSG00000184394|ENST00000641086|OR4N5 1.6526216038709556 0.46655611578153744 1 T 1 -1 3.9794 0 0 0.31515 0 0 752.3669697543895 406.2755221002563 1158.6424918546459 0 0 0 0 0 0 0 0 0 T 0.31515 + + 3 + NaN NaN 120619.5 NaN 21770 4814 26584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26587 103.43 NaN 149300 35 0 59358 0.261 + -1 NKFHFCLVL 9 33 589.312148865561 1176.6097447979218 2 589.3121337890625 MULTI HCD FTMS 0 0 0 26584 51091.12109375 0.4633828961248993 -19 0.2725372314453125 3 Carbamidomethyl (C) _NKFHFC(Carbamidomethyl (C))LVL_ REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF;REV__ENST00000465806.6_1_X:48935109-48935457:-|nuORF 7.289230182591677 0.29575926068275815 1 {I|L}V{I|L} 3 -1 29.693 0 0 2.5236 0 0 833.366991111525 0 833.366991111525 0 29.69273760456403 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.5236 + + 8 NaN NaN 104618 NaN 21771 4814 26584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26588 103.44 NaN 133170 35 0 14104 0.261 + 14761 LHVVWNRLGR 10 38 625.3670745736401 1248.7195962140802 2 625.3663330078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LHVVWNRLGR_ ENSG00000138395|ENST00000652192|CDK15;nc|ENSG00000138395|Q96Q40-3|CDK15;nc|ENSG00000138395|Q96Q40-4|CDK15;nc|ENSG00000138395|Q96Q40-5|CDK15 0.45834013312273997 0.47287763746706196 1 V 1 9 6.9897 0 0 0.55975 0 0 132.17101915893778 1014.453954499447 1146.6249736583848 0 0 0 0 0 0 0 0 0 + V 0.55975 + + 1 + NaN NaN 106072.2 NaN 21772 4814 26584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26590 103.44 NaN 106270 35 0 10354 0.327 + 13760 KYPSPFFVF 9 39 566.2977559667546 1130.5809590003091 2 566.298828125 MULTI HCD FTMS 0 0 0 26589 32723.708984375 0.6653697655443271 -9 0.1452178955078125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.90604991867851 0.24021115267848145 1 V{M(Oxidation (M))|F} 2 7 27.959 0 0 2.473 0 0 866.4304776188416 0 866.4304776188416 0 17.501225267834002 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.473 + + 15 NaN NaN 106171.5 NaN 21773 4815 26589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26591 103.44 NaN 102470 35 0 7448 0.261 + -1 CPPPCMCCRLS 11 48 479.8560481070051 1436.5463149212153 3 480.1900329589844 MULTI HCD FTMS 0 0 0 26589 36652.5 0.5841845001564273 -2 0.02848052978515625 2 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))PPPC(Carbamidomethyl (C))MC(Carbamidomethyl (C))C(Carbamidomethyl (C))RLS_ REV__ENST00000487891.1_1_3:49020199-49020700:+|nuORF 0.5059551277355931 0.4167017191902429 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90898.5 NaN 21774 4815 26589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26593 103.45 NaN 263890 35 0 48992 0.411 + 6630 FPLSFGTDIF 10 75 572.2882520641333 1142.5619511950665 2 572.2882690429688 MULTI HCD FTMS 0 0 0 26592 26848.341796875 0.25299008759130215 -5 0.0739288330078125 1 Unmodified _FPLSFGTDIF_ REV__ENSG00000078747|ENST00000374864|ITCH;REV__ENSG00000123124|ENST00000517970|WWP1;REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF;REV__nc|ENSG00000123124|Q9H0M0-3|WWP1;REV__nc|ENSG00000123124|Q9H0M0-6|WWP1;REV__nc|ENSG00000289720|Q96J02-3|ITCH;REV__nc|ENSG00000289720|Q96J02|ITCH;REV__WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 20.453626601364224 0.3197956946484955 1 {I|L}P{M(Oxidation (M))|F}A{[CA]|SS}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 -1 + 74.026 0 0 6.479 6.479 93.658 0 0 0 42.35165734758857 9.171043487920656 9.171043487920656 51.602430896609704 0 1.0941876774005248 1.3979400086720375 0 0 {I|L}P{M(Oxidation (M))|F}A{[CA]|SS}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{I|L}DY{I|L}T{M(Oxidation (M))|F}[QP]{M(Oxidation (M))|F};{I|L}DY{I|L}T{M(Oxidation (M))|F}G[PA]{M(Oxidation (M))|F} 6.479;1.9626;1.9226 -;-;- 589 + NaN NaN 181230 NaN 21775 4816 26592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26595 103.46 NaN 1198100 35 0 236600 0.411 -1 0 63 569.3497791168053 1136.6850053004105 2 569.3497924804688 MULTI HCD FTMS 0 0 0 26594 503124.6875 0.5518860253870471 -16 0.21018218994140625 1 NaN NaN 1 [VP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{I|L}PV 9 -1 56.661 0 0 4.9847 0 0 0 128.0716645727663 128.0716645727663 43.3726603386865 0 0 0 0 1.3807196863200843 1.6989700043360187 0 0 [VP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{I|L}PV 4.9847 - 77 NaN NaN 444171.2 NaN 21776 4817 26594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26597 103.46 NaN 218630 35 0 43045 0.411 + 23771 RRLDNMPIFS 10 52 624.8278517153534 NaN 0 624.875 PEAK HCD FTMS 0 0 0 26596 12813.1689453125 0.3390087024571577 -2 0.01476287841796875 1 Unmodified _RRLDNMPIFS_ ENSG00000143341|ENST00000271588|HMCN1;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;ENST00000493413.1_1_1:185934944-185947193:+|nuORF;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;nc|ENSG00000143341|Q96RW7-3|HMCN1 5.731851221503515 0.33527861879838866 1 VDT{M(Oxidation (M))|F} 4 8 16.938 0 0 1.3576 0 0 131.0933837095891 651.3243502252561 782.4177339348453 0 0 0 0 0 0 0 0 0 VDT{M(Oxidation (M))|F} 1.3576 - 19 + NaN NaN 164350.7 NaN 21777 4818 26596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26599 103.47 NaN 111140 35 0 34635 0.327 + 23630 RPRGVSLTNHH 11 39 425.2340437225085 NaN 0 425.2342224121094 PEAK HCD FTMS 0 0 0 26598 20033.19140625 0.32011850977053324 1 -0.00928497314453125 1 Unmodified _RPRGVSLTNHH_ ENSG00000130175|ENST00000677123|PRKCSH;nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH 1.3295316138638542 0.3383486451652214 1 N 1 10 3.0989 0 0 0.36525 0 0 442.27743085146386 289.10602747135005 731.3834583228139 0 0 0 0 0 0 0 0 0 + N 0.36525 + + 1 + NaN NaN 98136.3 NaN 21778 4819 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26600 103.48 NaN 190400 35 0 70927 0.261 -1 MPDVIDFLVL 10 37 589.312148865561 1176.6097447979218 2 589.3106079101562 MULTI HCD FTMS 0 0 0 26598 60245.109375 0.5464071381076793 -14 0.18375396728515625 2 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 6.2057823575117 0.44245551207394906 1 YY{I|L} 3 -1 31.043 0 0 2.6383 0 0 0 734.3757414622374 734.3757414622374 1.210149894766701 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 YY{I|L} 2.6383 - 24 NaN NaN 123897.2 NaN 21779 4819 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26602 103.48 NaN 101110 35 0 10858 0.327 + 15878 LPLIGVIVI 9 40 468.82795532625585 935.6413577193117 2 468.8277282714844 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 14.581692164780916 0.23437375358055648 1 V{I|L} 2 -1 25.217 0 0 2.6951 0 0 705.4786244123062 0 705.4786244123062 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.6951 + + 4 NaN NaN 97669.1 NaN 21780 4820 26601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26603 103.49 NaN 77590 35 0 4633.4 0.261 + 14624 LFVLSILGL 9 44 487.81757293671114 NaN 0 487.8173522949219 PEAK HCD FTMS 0 0 0 26601 10775.515625 0.4386600961971942 1 -0.012542724609375 2 Unmodified _LFVLSILGL_ ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1 12.531546534597751 0.23452071659215576 1 V 1 8 7.3464 0 0 0.75454 0 0 559.3384101783067 312.19272791080317 871.5311380891098 0 0 0 0 0 0.4247425010840047 0 0 0 + V 0.75454 + + 4 + NaN NaN 101138.5 NaN 21781 4820 26601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26604 103.49 NaN 502570 35 0 384330 0.261 + -1 DEDCCNPD 8 39 512.6537104253067 NaN 0 512.8058471679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _DEDC(Carbamidomethyl (C))C(Carbamidomethyl (C))NPD_ REV__ENSG00000089091|ENST00000699568|DZANK1;REV__nc|ENSG00000089091|Q9NVP4-2|DZANK1;REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1;REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1;REV__nc|ENSG00000089091|Q9NVP4|DZANK1 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 162915.7 NaN 21782 4820 26601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26606 103.49 NaN 350630 35 0 105140 0.411 + 10521 IPFADALDLF 10 58 561.2974293221916 1120.5803057111832 2 561.2976684570312 MULTI HCD FTMS 0 0 0 26605 271871.09375 1 0 0 1 Unmodified _IPFADALDLF_ ENSG00000146143|ENST00000615550|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENST00000490313.1_1_6:57244770-57299810:+|nuORF 99.79894945604345 0.00025031564603709316 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[PA]A{I|L}D{I|L}{M(Oxidation (M))|F} 10 2 + 85.099 0 0 7.5942 7.5942 96.346 0 0 0 9.004377006349458 56.68243764792422 9.004377006349458 85.09881272697172 0 1.9731975075880328 1.5228787452803376 0.7742275032520141 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[PA]A{I|L}D{I|L}{M(Oxidation (M))|F} 7.5942 - 185 NaN NaN 193025.5 NaN 21783 4821 26605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26608 103.5 NaN 71614 35 0 9122.5 0.327 + -1 VLCMWVHLL 9 32 585.8133303080541 1169.6121076829081 2 585.8124389648438 MULTI HCD FTMS 0 0 0 26607 42641.109375 0.8701239219027216 -10 0.10256195068359375 1 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))MWVHLL_ REV__ENSG00000101019|ENST00000374385|UQCC1;REV__ENST00000491040.5_1_20:33934876-33981976:-|nuORF;REV__nc|ENSG00000101019|Q9NVA1-2|UQCC1;REV__nc|ENSG00000101019|Q9NVA1-3|UQCC1;REV__nc|ENSG00000101019|Q9NVA1-4|UQCC1;REV__nc|ENSG00000101019|Q9NVA1-5|UQCC1 9.347437153973935 0.2795965555214564 1 {I|L}{I|L} 2 -1 25.969 0 0 2.2203 0 0 925.4325428693375 0 925.4325428693375 0 6.505149978319906 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2203 + + 13 NaN NaN 99030.3 NaN 21784 4822 26607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26609 103.51 NaN 70209 35 0 7462.3 0.261 + 5601 FLRKFSKTW 9 34 606.84814453125 NaN 0 606.84814453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FLRKFSKTW_ ENST00000430010.1_1_2:55451599-55452256:+|nuORF 2.0597508629832335 0.2852655770354268 1 T 1 8 10.485 0 0 0.86601 0 0 905.5405415998063 201.06665979556877 1106.6072013953751 0 0 0 0 0 0.3494850021680094 0 0 0 + T 0.86601 + + 3 + NaN NaN 100611.9 NaN 21785 4822 26607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26611 103.51 NaN 316630 35 0 61677 0.327 + 17998 MLFRTENSLW 10 45 432.88520627292405 NaN 0 432.8852233886719 PEAK HCD FTMS 0 0 0 26610 200609.796875 0.6914877333490168 244 -2.4113006591796875 1 Unmodified _MLFRTENSLW_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant 1.7422754331352037 0.33869314273211465 1 P 1 10 2.7642 0 0 0.32002 0 0 449.5377942823731 314.1517733209594 763.6895676033325 0 0 0 0 0 0 0 0 0 P 0.32002 - 1 + NaN NaN 130829.1 NaN 21786 4823 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26612 103.51 NaN 89111 35 0 11787 0.261 + 26677 SYALLWNLL 9 45 546.8079143641883 NaN 0 546.8074951171875 PEAK HCD FTMS 0 0 0 26610 40317.921875 0.5134368041305013 2 -0.029998779296875 2 Unmodified _SYALLWNLL_ ENSG00000050555|ENST00000361069|LAMC3 15.847184025352803 0.21527282152051216 1 N 1 8 10.485 0 0 0.96047 0 0 733.3798535313077 241.1554354303344 974.5352889616421 0 0 0 0 0 0.5 0 0 0 + N 0.96047 + + 14 + NaN NaN 119043.4 NaN 21787 4823 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26613 103.52 NaN 242260 35 0 72333 0.261 + 3328 EEKRKSKSKK 10 36 624.3727967300762 1246.7310405269523 2 624.3717651367188 MULTI HCD FTMS 0 0 0 26610 11124.9951171875 0.15785158740680766 -1 0.00930023193359375 3 Unmodified _EEKRKSKSKK_ REV__CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant;REV__ENSG00000111642|ENST00000544040|CHD4;REV__nc|ENSG00000111642|Q14839-2|CHD4 1.4819007175156935 0.4674597685733628 1 M 1 -1 6.9897 0 0 0.56064 0 0 670.3741812513648 442.29601813750526 1112.67019938887 0 0 0 0 0 0.5 0 0 0 M 0.56064 - 3 + NaN NaN 124412.7 NaN 21788 4823 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26614 103.52 NaN 79485 35 0 8346.4 0.264 + -1 VDTYNDSMYIW 11 47 474.86801100823345 1421.5822036249003 3 474.86822509765625 MULTI HCD FTMS 0 0 0 26610 9053.5458984375 0.1472962268663174 7 -0.07295989990234375 4 Oxidation (M) _VDTYNDSM(Oxidation (M))YIW_ REV__ENSG00000135636|ENST00000410020|DYSF;REV__nc|ENSG00000135636|O75923-10|DYSF;REV__nc|ENSG00000135636|O75923-11|DYSF;REV__nc|ENSG00000135636|O75923-12|DYSF;REV__nc|ENSG00000135636|O75923-14|DYSF;REV__nc|ENSG00000135636|O75923-15|DYSF;REV__nc|ENSG00000135636|O75923-2|DYSF;REV__nc|ENSG00000135636|O75923-3|DYSF;REV__nc|ENSG00000135636|O75923-4|DYSF;REV__nc|ENSG00000135636|O75923-5|DYSF;REV__nc|ENSG00000135636|O75923-6|DYSF;REV__nc|ENSG00000135636|O75923-7|DYSF;REV__nc|ENSG00000135636|O75923-8|DYSF;REV__nc|ENSG00000135636|O75923-9|DYSF;REV__nc|ENSG00000135636|O75923|DYSF 2.4347853303010236 0.4082425251555256 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.27993 0 0 1124.6072718395471 146.92217432193596 1271.529446161483 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.27993 + + 9 + NaN NaN 97115.4 NaN 21789 4823 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26615 103.52 NaN 87595 35 0 5593.6 0.261 + 29623 VAPIIFLTI 9 37 493.81779902577864 NaN 0 493.8179626464844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.25691533546754686 1 T 1 -1 11.99 0 0 1.2165 0 0 131.0965109555696 750.4556078914736 881.5521188470432 0 0 0 0 0 0.5 0 0 0 T 1.2165 + + 1 + NaN NaN 114664.8 NaN 21790 4823 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26616 103.53 NaN 160350 35 0 72040 0.261 + 14332 LDPSYAKNN 9 45 511.25153436464353 NaN 0 510.7657470703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LDPSYAKNN_ ENSG00000134910|ENST00000392708|STT3A;ENST00000526726.1_1_11:125479363-125482632:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;nc|ENSG00000134910|P46977-2|STT3A 3.5964929083625545 0.27781873954207675 1 {I|L} 1 8 6.9897 0 0 0.68494 0 0 332.1477087665933 572.2353609674436 904.383069734037 0 0 0 0 0 0 0 0 0 + {I|L} 0.68494 + + 4 + NaN NaN 124756.5 NaN 21791 4823 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26618 103.53 NaN 176540 35 0 15247 0.411 + 6692 FPNLEVEFF 9 65 571.2820154083932 1140.5494778835864 2 571.2820434570312 MULTI HCD FTMS 0 0 0 26617 14357.0439453125 0.23425474151279838 15 -0.1321258544921875 1 Unmodified _FPNLEVEFF_ tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 10.073929032068715 0.27331982688540024 1 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 6 42.964 0 0 3.7669 0 0 600.2908135868081 0 600.2908135868081 0 35.97418457616534 0 0 0 1.579689690656103 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.7669 - 50 NaN NaN 141774.6 NaN 21792 4824 26617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26621 103.55 NaN 565190 35 0 144110 0.327 -1 SSLVLLLCLTC 11 40 639.8436370537548 1277.6727211743096 2 639.8445434570312 MULTI HCD FTMS 0 0 0 26620 212032.921875 0.9695244502207419 -4 0.04602813720703125 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 1 M 1 -1 9.6041 0 0 0.75169 0 0 701.3132762802263 442.29650361004104 1143.6097798902674 0 0 0 0 0 0.5 0 0 0 M 0.75169 - 3 + NaN NaN 165581.1 NaN 21793 4826 26620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26622 103.55 NaN 578630 35 0 180690 0.261 -1 THIIIIFLMF 10 39 632.361973574362 1262.7093942155238 2 632.3615112304688 MULTI HCD FTMS 0 0 0 26620 149112.859375 0.6197869990651131 -2 0.01421356201171875 2 Oxidation (M) _THIIIIFLM(Oxidation (M))F_ ENSG00000184394|ENST00000641086|OR4N5 1.4819007175156935 0.4674597685733628 1 T 1 -1 2.4743 0 0 0.19595 0 0 752.3662068149364 406.2756746881469 1158.6418815030834 0 0 0 0 0 0 0 0 0 T 0.19595 + + 1 + NaN NaN 181063.6 NaN 21794 4826 26620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26623 103.55 NaN 61514 35 0 5048.9 0.264 + 30266 VKGLTLLSK 9 38 479.81939697265625 NaN 0 479.81939697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VKGLTLLSK_ REV__ENSG00000118193|ENST00000367350|KIF14 0 0.29524684227089293 1 A 1 -1 2.2185 0 0 0.23167 0 0 482.44293486877996 401.11972986392817 883.5626647327081 0 0 0 0 0 0 0 0 0 A 0.23167 - 2 + NaN NaN 106096.9 NaN 21795 4826 26620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26625 103.56 NaN 111230 35 0 24282 0.411 + 9575 HRRQLDRLLRR 11 56 506.9787247548477 1517.914344864743 3 507.3140869140625 MULTI HCD FTMS 0 0 0 26624 87696.7421875 0.7910805483758483 -11 0.10968017578125 1 Unmodified _HRRQLDRLLRR_ REV__ENST00000520103.5_1_8:77896346-77913121:-|nuORF 0.09484139111097674 0.41850472438158626 1 {[QN]|[E{I|L}]|[KN]}H 3 -1 5.6864 0 0 0.37462 0 0 0 1135.6803415290588 1135.6803415290588 -5.568109453757657 0 -5.568109453757657 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}H 0.37462 - 19 NaN NaN 119448.5 NaN 21796 4827 26624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26627 103.57 NaN 196250 35 0 34738 0.411 -1 MYIIPVVLF 9 55 555.816975024597 1109.619397115994 2 555.8181762695312 MULTI HCD FTMS 0 0 0 26626 60752.98828125 0.06376342705133976 47 -0.43701934814453125 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 1 C(Carbamidomethyl (C))V{I|L}{M(Oxidation (M))|F} 4 -1 44.553 0 0 4.0151 0 0 572.3504284654065 0 572.3504284654065 0 40.57319389984244 0 0 0 1.5 0 0 0 C(Carbamidomethyl (C))V{I|L}{M(Oxidation (M))|F} 4.0151 - 55 + NaN NaN 139850.4 NaN 21797 4828 26626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26629 103.57 NaN 360200 35 0 47328 0.326 + 25212 SAPLLLHTLER 11 41 625.3670745736401 1248.7195962140802 2 625.3689575195312 MULTI HCD FTMS 0 0 0 26628 17749.5390625 0.21535724732924486 -8 0.080596923828125 1 Unmodified _SAPLLLHTLER_ REV__ENST00000488701.1_1_12:7168132-7170034:+|nuORF;REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF 2.735195868890462 0.4069250265843076 1 M 1 -1 8.4949 0 0 0.68028 0 0 672.3582813720865 442.2961176080537 1114.6543989801403 0 0 0 0 0 0.5 0 0 0 M 0.68028 - 9 + NaN NaN 140388.8 NaN 21798 4829 26628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26630 103.58 NaN 122090 35 0 24964 0.261 + 20956 PLFADAGLPDQ 11 46 572.2882520641333 1142.5619511950665 2 572.2882080078125 MULTI HCD FTMS 0 0 0 26628 37673.95703125 0.3549991191767479 8 -0.07138824462890625 2 Unmodified _PLFADAGLPDQ_ REV__ENSG00000187994|ENST00000591812|RINL;REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF;REV__nc|ENSG00000187994|Q6ZS11-2|RINL 6.630372943996041 0.3898421031449734 1 {I|L}P{M(Oxidation (M))|F}W 4 -1 50.935 0 0 4.4579 0 0 0 596.2696627252561 596.2696627252561 48.170489064918364 0 0 0 0 0.28872548999643577 2 0 0 {I|L}P{M(Oxidation (M))|F}W 4.4579 - 17 + NaN NaN 109201.1 NaN 21799 4829 26628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26632 103.58 NaN 103430 35 0 47836 0.327 -1 0 35 610.1824927370083 609.1752162704082 1 610.1862182617188 MULTI HCD FTMS 0 0 0 26631 57966.4609375 0.5463012253092651 -132 1.7960281372070312 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113552.1 NaN 21800 4830 26631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26633 103.59 NaN 137770 35 0 38307 0.261 + -1 NKFHFCLVL 9 40 589.312148865561 1176.6097447979218 2 589.3124389648438 MULTI HCD FTMS 0 0 0 26631 16881.578125 0.15311142905568761 -3 0.02400970458984375 2 Carbamidomethyl (C) _NKFHFC(Carbamidomethyl (C))LVL_ REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF;REV__ENST00000465806.6_1_X:48935109-48935457:-|nuORF 3.944395688203298 0.32111559684428237 1 {I|L}V{I|L} 3 -1 26.198 0 0 2.2266 0 0 833.3607044904312 0 833.3607044904312 0 23.098943791441968 0 0 0 0 0 0 0 {I|L}V{I|L} 2.2266 + + 5 NaN NaN 112306.8 NaN 21801 4830 26631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26634 103.59 NaN 133990 35 0 10639 0.261 + -1 GFSALLCLHD 10 48 566.7757292996566 NaN 0 566.7755126953125 PEAK HCD FTMS 0 0 0 26631 14339.9111328125 0.4756859349879939 1 -0.01253509521484375 3 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 1 S 1 -1 14.292 0 0 1.263 0 0 204.0911351968603 837.3894817256978 1041.480616922558 0 0 0 0 0 0.8807196863200843 0 0 0 S 1.263 + + 29 + NaN NaN 106386.2 NaN 21802 4830 26631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26636 103.6 NaN 126070 35 0 13054 0.411 + 33195 YFCCGLQDFT 10 49 598.7410439257696 1195.4675349183392 2 598.7405395507812 MULTI HCD FTMS 0 0 0 26635 11089.76953125 0.10682033797594159 -2 0.02170562744140625 1 Unmodified _YFCCGLQDFT_ ENSG00000148335|ENST00000372483|NTMT1 1.4819007175156935 0.4674597685733628 1 WDVS[R{M(Oxidation (M))|F}] 6 9 31.546 0 0 2.6388 0 0 387.0922108380875 0 387.0922108380875 0 25.603780040884963 0 0 0 1.4634679910804405 0 0 0 WDVS[R{M(Oxidation (M))|F}] 2.6388 - 57 NaN NaN 120777.6 NaN 21803 4831 26635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26639 103.61 NaN 167940 35 0 19905 0.327 -1 PTCTCSSFFF 10 42 598.7410439257696 1195.4675349183392 2 598.74072265625 MULTI HCD FTMS 0 0 0 26638 103817.0234375 1 0 0 1 Carbamidomethyl (C) _PTC(Carbamidomethyl (C))TCSSFFF_ ENST00000523232.1_1_8:137528301-137531442:+|nuORF 1.6526216038709556 0.46655611578153744 1 WDVSR{M(Oxidation (M))|F} 6 -1 48.295 0 0 4.0398 0 0 387.09248549629064 0 387.09248549629064 0 48.294803486847826 0 0 0 1.555462187404089 0 0 0 WDVSR{M(Oxidation (M))|F} 4.0398 - 45 NaN NaN 112242.2 NaN 21804 4833 26638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26640 103.61 NaN 713860 35 0 581730 0.261 -1 LMCWVRSD 8 40 513.2308368863427 NaN 0 513.2338256835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _LM(Oxidation (M))CWVRSD_ ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI;nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;nc|ENSG00000188992|Q6XZB0-6|LIPI;nc|ENSG00000188992|Q6XZB0-7|LIPI 0.6903765706972694 0.38822285293237185 1 R 1 -1 1.9897 0 0 0.19422 0 0 679.308828458429 186.02082239322502 865.329650851654 0 0 0 0 0 0 0 0 0 R 0.19422 + + 1 + NaN NaN 188200.2 NaN 21805 4833 26638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26642 103.62 NaN 193670 35 0 57393 0.327 + 10522 IPFADALDLF 10 37 561.2974293221916 1120.5803057111832 2 561.2976684570312 MULTI HCD FTMS 0 0 0 26641 112104.828125 0.4123455222057788 13 -0.10680389404296875 1 Unmodified _IPFADALDLF_ ENSG00000146143|ENST00000615550|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENST00000490313.1_1_6:57244770-57299810:+|nuORF 41.8396318013385 0.12944265636084 1 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[PA]A{I|L}D{I|L}{M(Oxidation (M))|F} 10 2 + 56.52 0 0 5.0438 5.0438 91.4 0 0 0 2.9318250140072166 41.41416452716277 2.9318250140072166 56.52015511993247 0 1.7134679910804405 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[PA]A{I|L}D{I|L}{M(Oxidation (M))|F} 5.0438 - 107 NaN NaN 123291.3 NaN 21806 4834 26641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26643 103.62 NaN 96734 35 0 10889 0.262 + 21117 PPCASCGFR 9 45 469.2046316592775 NaN 0 468.8282165527344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PPCASCGFR_ REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF 2.0597508629832335 0.2852655770354268 1 V 1 -1 6.9897 0 0 0.74645 0 0 131.84875136703425 702.4562471979124 834.3049985649466 0 0 0 0 0 0 0 0 0 V 0.74645 - 1 + NaN NaN 105676.3 NaN 21807 4834 26641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26644 103.63 NaN 71822 35 0 4671.6 0.261 + 13518 KYPENFFLL 9 41 585.8133303080541 1169.6121076829081 2 585.8130493164062 MULTI HCD FTMS 0 0 0 26641 42620.61328125 0.8697056836875617 1 -0.0125274658203125 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 26.682 0 0 2.2813 0 0 778.3618641584 0 778.3618641584 0 26.682437647924218 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.2813 + + 6 NaN NaN 101225.3 NaN 21808 4834 26641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26647 103.64 NaN 167590 35 0 44270 0.411 + 20448 PALISLLFFNL 11 45 624.3727967300762 1246.7310405269523 2 624.37158203125 MULTI HCD FTMS 0 0 0 26646 42433.15234375 0.6020803052567262 12 -0.094818115234375 1 Unmodified _PALISLLFFNL_ REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|3|1|sense 1.3295316138638542 0.4130897924953357 1 V 1 -1 6.9897 0 0 0.56064 0 0 130.18411777480225 1014.4586886041624 1144.6428063789647 0 0 0 0 0 0 0 0 0 V 0.56064 - 2 + NaN NaN 138362.2 NaN 21809 4836 26646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26649 103.65 NaN 81457 35 0 14685 0.326 + 26678 SYALLWNLL 9 37 546.8077859974393 NaN 0 546.8079223632812 PEAK HCD FTMS 0 0 0 26648 9816.5537109375 0.2048812990371702 1 -0.01256561279296875 1 Unmodified _SYALLWNLL_ ENSG00000050555|ENST00000361069|LAMC3 9.38312468134398 0.24977752951804 1 M 1 9 5.4846 0 0 0.50243 0 0 433.2803536337472 524.2515963190061 957.5319499527534 0 0 0 0 0 0 0 0 0 M 0.50243 - 2 + NaN NaN 97178.2 NaN 21810 4837 26648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26650 103.65 NaN 93024 35 0 7648.5 0.261 + 14489 LFALIVPTL 9 37 493.81791084878796 985.6212687643759 2 494.3194885253906 MULTI HCD FTMS 0 0 0 26648 8539.9560546875 0.2661518133742997 1 -0.01256561279296875 2 Unmodified _LFALIVPTL_ REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant 7.910154910731844 0.2910521888787154 1 T{I|L} 2 -1 22.959 0 0 2.3294 0 0 753.4810881167139 0 753.4810881167139 0 17.15681882079494 0 0 0 0.5 0 0 0 T{I|L} 2.3294 + + 20 NaN NaN 100521.4 NaN 21811 4837 26648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26651 103.65 NaN 67868 35 0 4437.5 0.261 + 29986 VFISIVALL 9 39 487.8176990050109 NaN 0 487.8175964355469 PEAK HCD FTMS 0 0 0 26648 11999.4130859375 0.6407131932990887 1 -0.01256561279296875 3 Unmodified _VFISIVALL_ REV__ENST00000442510.6_2_1:198725342-198725402:+|nuORF 16.942295170755138 0.2079222001251384 1 V 1 -1 12.985 0 0 1.3336 0 0 315.21552388717186 556.3137911432249 871.5293150303967 0 0 0 0 0 0.75 0 0 0 V 1.3336 + + 8 + NaN NaN 91528.6 NaN 21812 4837 26648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26654 103.66 NaN 332470 35 0 82203 0.411 -1 SSLVLLLCLTC 11 53 639.8436370537548 1277.6727211743096 2 639.8436279296875 MULTI HCD FTMS 0 0 0 26653 132628.53125 0.6064464079759583 9 -0.06835174560546875 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 1 M 1 -1 9.6041 0 0 0.75169 0 0 701.313157885125 442.2961152409344 1143.6092731260594 0 0 0 0 0 0.5 0 0 0 M 0.75169 - 2 + NaN NaN 196678.5 NaN 21813 4839 26653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26656 103.67 NaN 208490 35 0 56808 0.411 -1 THIIIIFLMF 10 41 632.361973574362 1262.7093942155238 2 632.3621826171875 MULTI HCD FTMS 0 0 0 26655 90984.4375 0.37817644780009335 12 -0.09995269775390625 1 Oxidation (M) _THIIIIFLM(Oxidation (M))F_ ENSG00000184394|ENST00000641086|OR4N5 3.5964929083625545 0.45626689593999237 1 N 1 -1 8.4949 0 0 0.67275 0 0 703.3572346469676 442.29623546384425 1145.653470110812 0 0 0 0 0 0.5 0 0 0 N 0.67275 - 3 + NaN NaN 163782.2 NaN 21814 4840 26655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26658 103.68 NaN 208460 35 0 91574 0.411 + 8070 GIFMELFESGN 11 60 415.1939280699599 NaN 0 415.1941833496094 PEAK HCD FTMS 0 0 0 26657 34950.69140625 0.492191499368765 20 -0.1918792724609375 1 Unmodified _GIFMELFESGN_ REV__ENST00000418696.5_2_16:90046667-90060229:+|nuORF;REV__ENST00000427658.1_1_16:90057264-90060229:+|nuORF;REV__ENST00000436447.5_1_16:90046667-90060229:+|nuORF;REV__ENST00000437774.5_1_16:90055269-90060229:+|nuORF;REV__ENST00000557444.5_1_16:90055269-90057690:+|nuORF 2.9952420565917617 0.33362350433860827 1 W 1 -1 2.2185 0 0 0.26781 0 0 432.2156321635542 207.06382166080314 639.2794538243573 0 0 0 0 0 0 0 0 0 W 0.26781 - 1 + NaN NaN 150646.2 NaN 21815 4841 26657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26660 103.69 NaN 174020 35 0 32530 0.327 -1 MYIIPVVLF 9 38 555.816975024597 1109.619397115994 2 555.8175659179688 MULTI HCD FTMS 0 0 0 26659 57909.703125 0.060779251115706694 61 -0.6245346069335938 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 36.466142684027034 0.08156716203802528 1 V{I|L}{M(Oxidation (M))|F} 3 -1 39.253 0 0 3.5375 0 0 732.3903065412125 0 732.3903065412125 0 31.15356566548286 0 0 0 1.305462187404089 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.5375 + + 24 NaN NaN 126554.2 NaN 21816 4842 26659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26661 103.69 NaN 87769 35 0 8527.2 0.261 + 29758 VEAWPVSSL 9 41 494.26086866724245 986.5071844012849 2 494.2608947753906 MULTI HCD FTMS 0 0 0 26659 36407.44921875 0.24505584565145372 -11 0.0909576416015625 2 Unmodified _VEAWPVSSL_ REV__ENSG00000181652|ENST00000639579|ATG9B 26.88365393820708 0.12808753336095696 1 WS{I|L} 3 -1 36.242 0 0 3.6738 0 0 582.2810514480256 0 582.2810514480256 0 29.252509456924827 0 0 0 0.8807196863200843 0 0.4247425010840047 0 WS{I|L} 3.6738 - 11 NaN NaN 96541.9 NaN 21817 4842 26659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26663 103.7 NaN 96731 35 0 7135.4 0.411 + -1 GFSALLCLHD 10 60 566.775650729697 NaN 0 566.775146484375 PEAK HCD FTMS 0 0 0 26662 16243.6748046875 0.5443734345214917 -8 0.06450653076171875 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 1 S 1 -1 16.237 0 0 1.435 0 0 840.4152102955283 201.06684290103752 1041.4820531965659 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.435 + + 15 + NaN NaN 117996.1 NaN 21818 4843 26662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26667 103.72 NaN 109350 35 0 27120 0.327 -1 MPDVIDFLVL 10 45 589.312148865561 1176.6097447979218 2 589.3114013671875 MULTI HCD FTMS 0 0 0 26666 38857.53125 0.3524274860567006 13 -0.1382904052734375 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 9.38312468134398 0.42334543440173333 1 {M(Oxidation (M))|F}{I|L}V{I|L} 4 -1 32.423 0 0 2.7556 0 0 686.2991810529312 0 686.2991810529312 0 11.921305798057134 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}V{I|L} 2.7556 + + 11 NaN NaN 97696.8 NaN 21819 4846 26666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26668 103.72 NaN 275970 35 0 186030 0.262 -1 ISSCSRCR 8 48 513.2331454346626 NaN 0 513.2330322265625 PEAK HCD FTMS 0 0 0 26666 21646.51953125 0.6852789605788708 -6 0.04486846923828125 2 2 Carbamidomethyl (C) _ISSC(Carbamidomethyl (C))SRC(Carbamidomethyl (C))R_ ENSG00000174485|ENST00000443035|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;nc|ENSG00000174485|Q7Z401|DENND4A 4.3292370932331545 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124070.4 NaN 21820 4846 26666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26670 103.73 NaN 62953 35 0 6002.5 0.411 + 2829 DYLESIVFI 9 51 549.7898546550541 NaN 0 549.7899780273438 PEAK HCD FTMS 0 0 0 26669 7395.60546875 0.21549550734934408 8 -0.0893096923828125 1 Unmodified _DYLESIVFI_ ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1;nc|ENSG00000151239|Q12792-4|TWF1 20.453626601364224 0.18435338882370536 1 {M(Oxidation (M))|F}V 2 8 20.217 0 0 1.8419 0 0 131.09648678964544 717.308447226674 848.4049340163194 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}V 1.8419 - 9 + NaN NaN 96906.9 NaN 21821 4847 26669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26673 103.74 NaN 94055 35 0 10655 0.327 + 13761 KYPSPFFVF 9 39 566.2975097198945 1130.580466506589 2 566.297607421875 MULTI HCD FTMS 0 0 0 26672 18218.5546875 0.2499833842881829 11 -0.121856689453125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 14.838274106304384 0.23215694253501695 1 V{M(Oxidation (M))|F} 2 7 28.711 0 0 2.5395 0 0 866.4326526411577 0 866.4326526411577 0 18.253800256993955 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.5395 + + 13 + NaN NaN 100450.1 NaN 21822 4849 26672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26674 103.74 NaN 70154 35 0 9136.2 0.261 + -1 HIGLSMMDNM 10 37 598.7410439257696 1195.4675349183392 2 598.7411499023438 MULTI HCD FTMS 0 0 0 26672 36302.234375 0.3496751609032087 16 -0.168853759765625 2 3 Oxidation (M) _HIGLSM(Oxidation (M))M(Oxidation (M))DNM(Oxidation (M))_ REV__ENSG00000110871|ENST00000288532|COQ5 1.3295316138638542 0.46826628246186464 1 WD[VS][R{M(Oxidation (M))|F}] 6 -1 13.913 0 0 1.1638 0 0 387.09239394355626 0 387.09239394355626 0 9.93378736925017 0 0 0 0.4247425010840047 0 0 0 WD[VS][R{M(Oxidation (M))|F}] 1.1638 - 10 NaN NaN 98686.2 NaN 21823 4849 26672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26677 103.76 NaN 108170 35 0 31180 0.327 + -1 FCVFFVFVI 9 36 589.31120206135 NaN 0 589.3110961914062 PEAK HCD FTMS 0 0 0 26676 34620.90625 1 0 0 1 Carbamidomethyl (C) _FC(Carbamidomethyl (C))VFFVFVI_ REV__ENSG00000174944|ENST00000309170|P2RY14 5.230669730166228 0.26989974671959066 1 V 1 -1 6.9897 0 0 0.59406 0 0 131.09282292247946 943.4239211053198 1074.5167440277992 0 0 0 0 0 0 0 0 0 V 0.59406 + + 3 + NaN NaN 121702.5 NaN 21824 4851 26676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26678 103.76 NaN 42436 35 0 6405.6 0.261 + 24019 RWFWQDKF 8 24 606.8022925766487 NaN 0 606.8021850585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RWFWQDKF_ REV__ENSG00000156103|ENST00000286614|MMP16;REV__nc|ENSG00000156103|P51512-2|MMP16 2.302733041254933 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.45267 0 0 131.17079501482232 930.3300875299436 1061.500882544766 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45267 + + 1 + NaN NaN 93630.8 NaN 21825 4851 26676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26679 103.76 NaN 54536 35 0 10097 0.261 -1 HVCVQRLPL 9 28 561.3157389143464 NaN 0 561.2974853515625 PEAK HCD FTMS 0 0 0 26676 12183.5498046875 0.4286116190309192 -2 0.01596832275390625 3 Carbamidomethyl (C) _HVC(Carbamidomethyl (C))VQRLPL_ HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|3|1|sense 4.3292370932331545 0.2742679634796037 1 {I|L}D 2 -1 10.969 0 0 0.97884 0 0 165.11619906923448 724.3685396783811 889.4847387476157 0 0 0 0 0 0 0 0 0 {I|L}D 0.97884 - 13 + NaN NaN 87684.1 NaN 21826 4851 26676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26680 103.77 NaN 31733 35 0 8496.3 0.261 -1 LCPCAREIVM 10 20 604.2867401267223 NaN 0 603.799072265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))PCAREIVM(Oxidation (M))_ ENST00000372921.9_1_10:75139931-75142961:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90251.2 NaN 21827 4851 26676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26682 103.77 NaN 49360 35 0 7050 0.327 + 8200 GQQKQNSVSK 10 29 552.2934596058732 NaN 0 552.2938232421875 PEAK HCD FTMS 0 0 0 26681 5713.88623046875 0.22053726558523482 7 -0.0832061767578125 1 Unmodified _GQQKQNSVSK_ AluSp_dup17164|chr6:42889159-42889460:+|1.0383190722797302|0.1877517114460719|2.47|521.0|11|3|sense 2.9952420565917617 0.3376207769591857 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89738.1 NaN 21828 4852 26681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26683 103.78 NaN 36966 35 0 4751.9 0.261 + 25792 SLLTKIKSKK 10 28 573.3843528784275 NaN 0 573.271484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SLLTKIKSKK_ REV__ENSG00000156675|ENST00000330843|RAB11FIP1;REV__nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1;REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;REV__RAB11FIP1|p.K1180Ifs*4|1|0.12|ENSG00000156675|chr8:37870514-37870515|-/AA|frameshift_variant 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89994.7 NaN 21829 4852 26681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26684 103.78 NaN 71409 35 0 9162.2 0.261 -1 PRCPVPLLL 9 39 532.8189345353269 NaN 0 532.8742065429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _PRC(Carbamidomethyl (C))PVPLLL_ ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108686.5 NaN 21830 4852 26681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26686 103.78 NaN 124270 35 0 19636 0.411 -1 IPMLYLSYR 9 53 586.3149815686521 NaN 0 586.3153686523438 PEAK HCD FTMS 0 0 0 26685 36337.44140625 0.8437453997053453 6 -0.0703277587890625 1 Oxidation (M) _IPM(Oxidation (M))LYLSYR_ ENST00000471416.2_1_6:25082092-25084866:-|nuORF 15.847184025352803 0.21527282152051216 1 {I|L}{M(Oxidation (M))|F} 2 -1 17.474 0 0 1.4927 0 0 700.3582823738292 207.11284815006096 907.4711305238901 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.4927 - 55 + NaN NaN 122799 NaN 21831 4853 26685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26688 103.79 NaN 230490 35 0 70055 0.327 -1 0 28 577.3673487862837 576.3600723196837 1 577.3484497070312 MULTI HCD FTMS 0 0 0 26687 33347.984375 0.32122123824545773 16 -0.1650390625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 128628.7 NaN 21832 4854 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26689 103.8 NaN 64748 35 0 12258 0.261 -1 MAYIIPIII 9 31 531.8168328686136 1061.619112804027 2 531.81689453125 MULTI HCD FTMS 0 0 0 26687 17252.556640625 0.4279701899369235 1 -0.0226287841796875 2 Oxidation (M) _M(Oxidation (M))AYIIPIII_ tr|U7STW3|U7STW3_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01005PE=3SV=1 9.347437153973935 0.2795965555214564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 97587.1 NaN 21833 4854 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26690 103.8 NaN 67438 35 0 11436 0.261 -1 0 33 469.3292105754909 468.3219341088909 1 469.32952880859375 MULTI HCD FTMS 0 0 0 26687 14277.6826171875 0.43622359515019193 -10 0.0890655517578125 3 NaN NaN 1 {I|L}[{I|L}V] 3 -1 6.5668 0 0 1.4022 0 0 125.07545691338153 0 125.07545691338153 0 6.5668186536885305 0 0 0 0 0 0 0 {I|L}[{I|L}V] 1.4022 - 4 + NaN NaN 91218.2 NaN 21834 4854 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26691 103.8 NaN 36712 35 0 5872.1 0.261 + 8285 GVLYKSFYN 9 29 545.7841186523438 NaN 0 545.7841186523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _GVLYKSFYN_ REV__tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1 6.723162845929126 0.26266733336404485 1 C 1 -1 7.6587 0 0 0.70292 0 0 544.7513532208999 438.76239954166255 983.5137527625625 0 0 0 0 0 0.3054621874040891 0 0 0 C 0.70292 - 1 + NaN NaN 84944.8 NaN 21835 4854 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26692 103.81 NaN 42339 35 0 5052.2 0.261 -1 YMCMCTQFN 9 35 607.2105614014764 NaN 0 606.7681884765625 PEAK HCD FTMS 0 0 0 26687 5658.4599609375 0.4329409793884915 2 -0.02977752685546875 5 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))C(Carbamidomethyl (C))MCTQFN_ ENST00000552283.5_1_12:102467249-102467429:-|nuORF 0.6014990680409731 0.29233206172879045 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.45237 0 0 606.7024205551028 442.6407564752563 1049.3431770303591 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.45237 + + 2 + NaN NaN 87397.6 NaN 21836 4854 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26693 103.81 NaN 65954 35 0 9597.6 0.263 -1 0 41 488.34250224721876 NaN 0 488.3202209472656 PEAK HCD FTMS 0 0 0 26687 4844.5654296875 0.9473667827377577 3 -0.04553985595703125 6 NaN NaN 1 R 1 -1 5.4846 0 0 0.56271 0 0 574.6932919926813 240.8597353570922 815.5530273497735 0 0 0 0 0 0 0 0 0 R 0.56271 - 1 + NaN NaN 87288.6 NaN 21837 4854 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26696 103.82 NaN 132010 35 0 14023 0.327 + 29759 VEAWPVSSL 9 34 494.26086866724245 986.5071844012849 2 494.260986328125 MULTI HCD FTMS 0 0 0 26695 68081.71875 0.4582530091971793 3 -0.03282928466796875 1 Unmodified _VEAWPVSSL_ REV__ENSG00000181652|ENST00000639579|ATG9B 26.88365393820708 0.12808753336095696 1 S{I|L} 2 -1 28.711 0 0 2.9104 0 0 768.3832613363822 0 768.3832613363822 0 21.721675119240516 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 2.9104 + + 16 NaN NaN 101696.3 NaN 21838 4856 26695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26697 103.83 NaN 116860 35 0 26417 0.261 -1 MYIIPVVLF 9 27 555.816975024597 1109.619397115994 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26695 32918.0859375 0.034549246559338595 75 -0.7641220092773438 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 1 V{I|L}{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.645 0 0 732.3878040998062 0 732.3878040998062 0 40.44531259372398 0 0 0 1.4247425010840047 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.645 + + 12 NaN NaN 103613.9 NaN 21839 4856 26695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26698 103.83 NaN 42373 35 0 7100.3 0.261 + 34065 YNIMMRCWK 9 24 622.79145339931 NaN 0 622.316162109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YNIMMRCWK_ ENSG00000101336|ENST00000375852|HCK;nc|ENSG00000101336|P08631-2|HCK;nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-4|HCK 4.3292370932331545 0.2742679634796037 1 {I|L} 1 8 6.9897 0 0 0.56207 0 0 853.3782731542855 274.08359705142817 1127.4618702057137 0 0 0 0 0 0 0 0 0 + {I|L} 0.56207 + + 2 + NaN NaN 89785.1 NaN 21840 4856 26695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26699 103.83 NaN 18809 35 0 4010.7 0.261 -1 RCRKCKACV 9 15 619.3089761839695 NaN 0 619.3090209960938 PEAK HCD FTMS 0 0 0 26695 12944.9365234375 0.4901826390134884 9 -0.08681488037109375 4 3 Carbamidomethyl (C) _RC(Carbamidomethyl (C))RKC(Carbamidomethyl (C))KAC(Carbamidomethyl (C))V_ ENSG00000173120|ENST00000529006|KDM2A;ENST00000529124.1_1_11:67012581-67016021:+|nuORF;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82512.3 NaN 21841 4856 26695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26701 103.84 NaN 151860 35 0 20738 0.411 + 13519 KYPENFFLL 9 56 585.813261305271 1169.611969677342 2 585.8129272460938 MULTI HCD FTMS 0 0 0 26700 30640.541015625 0.443279683007818 -51 0.5431442260742188 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.555 0 0 2.6979 0 0 778.3669084315237 0 778.3669084315237 0 24.564856298445576 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6979 + + 31 NaN NaN 137312.5 NaN 21842 4857 26700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26703 103.85 NaN 92267 35 0 11491 0.327 + -1 GFSALLCLHD 10 38 566.77547414708 1131.53639536096 2 566.7755126953125 MULTI HCD FTMS 0 0 0 26702 27690.619140625 0.7634548060463807 1 -0.00937652587890625 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.42334543440173333 1 SW 2 -1 26.454 0 0 2.3379 0 0 840.4138890532831 0 840.4138890532831 0 10.969100130080562 0 0 0 0.8494850021680094 0 0 0 SW 2.3379 - 29 NaN NaN 94989.8 NaN 21843 4858 26702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26704 103.85 NaN 48923 35 0 8409.5 0.261 + 20783 PGWLSGPYLQ 10 31 559.2888046112702 NaN 0 559.2901611328125 PEAK HCD FTMS 0 0 0 26702 5552.72216796875 0.17173469884566 10 -0.09229278564453125 2 Unmodified _PGWLSGPYLQ_ REV__ENST00000461241.1_1_22:31518992-31523076:+|nuORF 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84340.9 NaN 21844 4858 26702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26707 103.86 NaN 92562 35 0 12524 0.327 + 13762 KYPSPFFVF 9 33 566.2975097198945 1130.580466506589 2 566.2977905273438 MULTI HCD FTMS 0 0 0 26706 18625.658203125 0.25556939900434367 22 -0.21539306640625 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 12.240655878213236 0.2545997876781172 1 V{M(Oxidation (M))|F} 2 7 25.969 0 0 2.297 0 0 866.4342046289299 0 866.4342046289299 0 15.511525224473813 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.297 + + 20 NaN NaN 102950 NaN 21845 4860 26706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26708 103.87 NaN 40068 35 0 4464 0.261 + -1 NVGRRCPPME 10 26 587.7760620117188 NaN 0 587.7760620117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _NVGRRCPPM(Oxidation (M))E_ REV__ENSG00000134369|ENST00000685211|NAV1;REV__nc|ENSG00000134369|Q8NEY1-2|NAV1;REV__nc|ENSG00000134369|Q8NEY1-3|NAV1;REV__nc|ENSG00000134369|Q8NEY1-4|NAV1;REV__nc|ENSG00000134369|Q8NEY1-5|NAV1;REV__nc|ENSG00000134369|Q8NEY1-7|NAV1;REV__nc|ENSG00000134369|Q8NEY1|NAV1 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105974.9 NaN 21846 4860 26706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26710 103.87 NaN 113680 35 0 15736 0.327 -1 QCLYFILI 8 30 527.7857334903274 1053.5569140474547 2 527.7859497070312 MULTI HCD FTMS 0 0 0 26709 41834.77734375 0.07320158205103754 -16 0.16083526611328125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QCLYFILI_ nc|ENSG00000132204|Q9BZP3-3|LINC00470 13.50788311687929 0.4944073034352369 1 {I|L}{I|L}{I|L} 3 -1 30.005 0 0 2.848 0 0 696.291795799025 0 696.291795799025 0 28.411290632962718 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L}{I|L} 2.848 + + 9 NaN NaN 102314.6 NaN 21847 4861 26709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26711 103.88 NaN 51047 35 0 9320.8 0.261 + 17982 MLADLHYLF 9 31 561.7861795905874 NaN 0 561.8177490234375 PEAK HCD FTMS 0 0 0 26709 4044.22412109375 0.2603955160983884 -2 0.01612091064453125 2 Unmodified _MLADLHYLF_ ENST00000533238.5_1_11:122929791-122931422:-|nuORF 12.531546534597751 0.23452071659215576 1 {I|L} 1 8 10.485 0 0 0.93482 0 0 843.3961068844966 162.05600916080314 1005.4521160452997 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.93482 + + 5 + NaN NaN 85615.3 NaN 21848 4861 26709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26713 103.88 NaN 53165 35 0 7278.9 0.327 -1 ILAMIYVLF 9 24 549.8155855435472 1097.6166181538943 2 549.8157958984375 MULTI HCD FTMS 0 0 0 26712 19418.6015625 0.5284910769140486 -3 0.025543212890625 1 Oxidation (M) _ILAM(Oxidation (M))IYVLF_ tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 9.347437153973935 0.2795965555214564 1 Y[{I|L}V]{M(Oxidation (M))|F} 4 -1 18.188 0 0 1.657 0 0 557.323045799025 0 557.323045799025 0 17.21848749616356 0 0 0 0.3494850021680094 0 0 0 Y[{I|L}V]{M(Oxidation (M))|F} 1.657 + + 6 NaN NaN 87360.9 NaN 21849 4862 26712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26714 103.89 NaN 66077 35 0 13809 0.261 -1 MCMDVDEC 8 24 489.1395737326118 NaN 0 488.7084655761719 PEAK HCD FTMS 0 0 0 26712 4635.63427734375 0.351024365000481 -3 0.025543212890625 2 2 Oxidation (M) _M(Oxidation (M))CM(Oxidation (M))DVDEC_ ENSG00000138829|ENST00000262464|FBN2 0 0.38822285293237185 1 {M(Oxidation (M))|F} 1 -1 1.1092 0 0 0.11362 0 0 516.0547689478424 310.1185396783813 826.1733086262236 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.11362 + + 1 + NaN NaN 95060.9 NaN 21850 4862 26712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26716 103.89 NaN 116560 35 0 14277 0.327 + 23826 RRRRSRKWR 9 59 452.94832185841767 1355.823136175453 3 452.9483337402344 MULTI HCD FTMS 0 0 0 26715 67369.015625 0.31847031149118876 -14 0.14989471435546875 1 Unmodified _RRRRSRKWR_ ENST00000403909.2_1_6:139660476-139660551:+|nuORF 0.26902006276349055 0.3489776809129786 1 P 1 9 1.5938 0 0 0.11755 0 0 677.4175098100219 578.3211153619749 1255.7386251719968 0 0 0 0 0 0 0 0 0 P 0.11755 - 2 + NaN NaN 104493.7 NaN 21851 4863 26715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26717 103.89 NaN 40118 35 0 4232.7 0.261 -1 0 30 573.1190849855246 NaN 0 573.29052734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 S 1 -1 5.4846 0 0 0.47933 0 0 505.9157689927304 548.2534884088499 1054.1692574015804 0 0 0 0 0 0 0 0 0 S 0.47933 - 4 + NaN NaN 88574.2 NaN 21852 4863 26715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26719 103.9 NaN 37269 35 0 5416.6 0.327 + -1 LVQDMRVF 8 29 512.2704483933429 NaN 0 512.2705078125 PEAK HCD FTMS 0 0 0 26718 5623.009765625 0.4804020452680545 1 -0.009490966796875 1 Oxidation (M) _LVQDM(Oxidation (M))RVF_ REV__ENSG00000132635|ENST00000360652|PCED1A;REV__ENST00000487501.2_1_20:2816687-2819560:-|nuORF;REV__nc|ENSG00000132635|Q9H1Q7-2|PCED1A;REV__nc|ENSG00000132635|Q9H1Q7-3|PCED1A 1.844237919475145 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87534 NaN 21853 4864 26718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26720 103.9 NaN 70347 35 0 8522.1 0.261 -1 VWVNGNKPGF 10 42 580.2972184553253 NaN 0 580.2871704101562 PEAK HCD FTMS 0 0 0 26718 6127.6318359375 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VWVNGNKPGF_ CLIP1|p.I74M|1|0.72|ENSG00000130779|chr12:122377824-122377824|G/C|missense_variant;ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1 3.2813086475875832 0.33737594360511275 1 {I|L} 1 -1 6.9897 0 0 0.6033 0 0 427.1931174753004 615.278543360243 1042.4716608355434 0 0 0 0 0 0 0 0 0 {I|L} 0.6033 - 3 + NaN NaN 106309.9 NaN 21854 4864 26718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26722 103.91 NaN 281270 35 0 73087 0.327 -1 LMCSKSCCVYF 11 37 466.52883758619043 1396.5646833587714 3 466.5289611816406 MULTI HCD FTMS 0 0 0 26721 138843.078125 0.25952389547310567 -12 0.1243133544921875 1 2 Carbamidomethyl (C) _LMC(Carbamidomethyl (C))SKSC(Carbamidomethyl (C))CVYF_ ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 4.11662792887243 0.40086653484894175 1 PE 2 -1 25.217 0 0 1.8056 0 0 1152.4448154913948 0 1152.4448154913948 0 6.7216751192405155 0 0 0 0.4247425010840047 0 0 0 PE 1.8056 - 4 NaN NaN 124285.7 NaN 21855 4865 26721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26723 103.91 NaN 47408 35 0 5671.9 0.261 + 32680 WPGMLWIQA 9 30 551.2830689702073 NaN 0 551.2832641601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _WPGMLWIQA_ REV__ENST00000248142.7_3_16:739618-740018:-|nuORF 5.230669730166228 0.26989974671959066 1 {I|L}W 2 -1 10.969 0 0 0.99669 0 0 217.106102684752 581.2592257135374 798.3653283982894 0 0 0 0 0 0 0 0 0 {I|L}W 0.99669 + + 7 + NaN NaN 86866 NaN 21856 4865 26721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26724 103.92 NaN 172860 35 0 29358 0.261 + 18466 MPWRPSRF 8 39 538.7767361961121 1075.538919459024 2 538.7769165039062 MULTI HCD FTMS 0 0 0 26721 40422.9453125 0.4104143981044338 -12 0.1243133544921875 3 Unmodified _MPWRPSRF_ REV__ENST00000288502.8_2_9:117405626-117405680:+|nuORF 1.844237919475145 0.5392561982033289 1 MP 2 -1 20.969 0 0 1.9496 0 0 0 844.4261542520096 844.4261542520096 16.53212513775344 0 0 0 0 0 0 0 0 MP 1.9496 + + 6 + NaN NaN 111560.1 NaN 21857 4865 26721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26726 103.92 NaN 193410 35 0 47766 0.326 -1 0 34 577.3673487862837 576.3600723196837 1 577.3485107421875 MULTI HCD FTMS 0 0 0 26725 4146.02783203125 0.039936212606708966 28 -0.29236602783203125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105581.7 NaN 21858 4866 26725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26728 103.93 NaN 58211 35 0 7121.4 0.327 + -1 SNKFIPENVCT 11 34 436.87995029913964 1307.6180214976189 3 437.2148132324219 MULTI HCD FTMS 0 0 0 26727 33891.8671875 0.5890535778092179 29 -0.2997283935546875 1 Carbamidomethyl (C) _SNKFIPENVC(Carbamidomethyl (C))T_ REV__BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;REV__BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;REV__ENSG00000139618|ENST00000380152|BRCA2 0.4545168274142398 0.41692731010159206 1 N 1 -1 3.0989 0 0 0.23699 0 0 871.6718067532814 318.88544641666255 1190.557253169944 0 0 0 0 0 0 0 0 0 N 0.23699 + + 1 + NaN NaN 105565.1 NaN 21859 4867 26727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26729 103.93 NaN 45098 35 0 7507.6 0.261 + -1 ILSIDCIFH 9 24 559.2888046112702 NaN 0 559.28857421875 PEAK HCD FTMS 0 0 0 26727 18946.603515625 0.5859809207947921 19 -0.19537353515625 2 Carbamidomethyl (C) _ILSIDC(Carbamidomethyl (C))IFH_ REV__ENSG00000184954|ENST00000327335|OR6C70 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100753.1 NaN 21860 4867 26727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26732 103.94 NaN 165610 35 0 28310 0.327 -1 MYIIPVVLF 9 41 555.816975024597 1109.619397115994 2 555.8164672851562 MULTI HCD FTMS 0 0 0 26731 47502.79296875 0.0498566566005873 88 -0.899322509765625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18003371494288972 1 {I|L}{M(Oxidation (M))|F} 2 -1 26.454 0 0 2.384 0 0 831.4549572256017 0 831.4549572256017 0 12.64136888583522 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.384 + + 82 NaN NaN 101904.9 NaN 21861 4869 26731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26733 103.95 NaN 88832 35 0 7827.5 0.261 + 29760 VEAWPVSSL 9 44 494.26086866724245 986.5071844012849 2 494.2605895996094 MULTI HCD FTMS 0 0 0 26731 48922.9375 0.32929667082091 16 -0.172088623046875 2 Unmodified _VEAWPVSSL_ REV__ENSG00000181652|ENST00000639579|ATG9B 20.453626601364224 0.18364154288633264 1 SVS{I|L} 4 -1 43.404 0 0 4.3998 0 0 582.2813587873062 0 582.2813587873062 0 30.21652514092061 0 0 0 1 0 0.9247425010840047 0 SVS{I|L} 4.3998 - 34 NaN NaN 100769.9 NaN 21862 4869 26731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26734 103.95 NaN 666650 35 0 54480 0.261 + 25414 SERPPTYCEL 10 66 597.7770525690244 1193.5395522048486 2 598.2799072265625 MULTI HCD FTMS 0 0 0 26731 21984.896484375 0.43201823184228916 -8 0.0738372802734375 3 Unmodified _SERPPTYCEL_ ENSG00000125731|ENST00000245908|SH2D3A;ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A 47.748688679222035 0.08597705450879027 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{M(Oxidation (M))|F}[{I|L}P]D{M(Oxidation (M))|F}E 9 7 83.337 0 0 6.9823 0 0 0 84.00897561728098 84.00897561728098 40.16134955421954 0 0 0 0 2.5356668758921828 1.3010299956639813 1.0484550065040281 1.4361818737241734 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{M(Oxidation (M))|F}[{I|L}P]D{M(Oxidation (M))|F}E 6.9823 - 3005 NaN NaN 190865.7 NaN 21863 4869 26731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26737 103.96 NaN 86491 35 0 19402 0.411 + 28570 TPVDFFFEF 9 54 574.7687227696886 1147.522892606177 2 574.768310546875 MULTI HCD FTMS 0 0 0 26736 27961.482421875 0.09634960171428418 -11 0.10260772705078125 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 39.957323273324995 0.06554068735427583 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3 6 43.94 0 0 3.8291 0 0 706.3328950986788 0 706.3328950986788 0 33.48258770979733 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3.8291 + + 91 NaN NaN 108331.6 NaN 21864 4871 26736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26739 103.97 NaN 127990 35 0 25072 0.327 + 13520 KYPENFFLL 9 44 585.813261305271 1169.611969677342 2 585.8143310546875 MULTI HCD FTMS 0 0 0 26738 38399.203125 0.5555250013478136 -36 0.33354949951171875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 5.731851221503515 0.3075653528928475 1 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4352758033344 0 925.4352758033344 0 14.286662482156345 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 29 NaN NaN 115398 NaN 21865 4872 26738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26740 103.98 NaN 64456 35 0 12913 0.261 -1 IIAMEILRDD 10 33 602.8153076171875 NaN 0 602.8153076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _IIAM(Oxidation (M))EILRDD_ ENSG00000143156|ENST00000367811|NME7;ENST00000524967.5_1_1:169256457-169336948:-|nuORF;nc|ENSG00000143156|Q9Y5B8-2|NME7 3.944395688203298 0.33680843299986807 1 N 1 -1 6.9897 0 0 0.58121 0 0 617.3550881818375 468.20555864619354 1085.560646828031 0 0 0 0 0 0 0 0 0 N 0.58121 - 10 + NaN NaN 112610.2 NaN 21866 4872 26738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26742 103.98 NaN 37281 35 0 4751.8 0.327 + 30263 VKFQRRLF 8 26 547.3328184651452 NaN 0 547.332763671875 PEAK HCD FTMS 0 0 0 26741 26069.99609375 0.851698306268762 16 -0.17572021484375 1 Unmodified _VKFQRRLF_ REV__ENSG00000101327|ENST00000217305|PDYN 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107264.3 NaN 21867 4873 26741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26743 103.99 NaN 76533 35 0 11634 0.261 + 7211 FSPPLLTVF 9 38 510.79182486936827 NaN 0 510.7915344238281 PEAK HCD FTMS 0 0 0 26741 18947.083984375 0.5675902231953956 -10 0.091278076171875 2 Unmodified _FSPPLLTVF_ REV__chr12:119803389-119822820|475|13.17|0.78|4.07|-|0|CIT,CIT|1 16.942295170755138 0.2079222001251384 1 V 1 -1 15.044 0 0 1.4756 0 0 165.0784384896229 752.3991182916624 917.4775567812853 0 0 0 0 0 0.805462187404089 0 0 0 V 1.4756 + + 7 + NaN NaN 101210.6 NaN 21868 4873 26741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26745 103.99 NaN 451590 35 0 123010 0.327 + -1 EIFCFIII 8 41 527.7857334903274 1053.5569140474547 2 527.7858276367188 MULTI HCD FTMS 0 0 0 26744 339472.4375 0.5940014759379248 -3 0.0261688232421875 1 Carbamidomethyl (C) _EIFC(Carbamidomethyl (C))FIII_ REV__ENST00000417404.2_1_17:28960066-28961284:+|nuORF 32.116972079565 0.3321965280364247 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 44.68 0 0 4.2409 0 0 549.2248402326187 0 549.2248402326187 0 43.0866814795592 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.2409 + + 15 NaN NaN 152185.7 NaN 21869 4874 26744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26746 104 NaN 182890 35 0 27502 0.261 + 13521 KYPENFFLL 9 55 585.813261305271 1169.611969677342 2 585.812744140625 MULTI HCD FTMS 0 0 0 26744 31169.58984375 0.4509334837911435 -34 0.3189239501953125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 27.703 0 0 2.3686 0 0 778.3712635724625 0 778.3712635724625 0 7.781512503836435 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.3686 + + 111 NaN NaN 114127.3 NaN 21870 4874 26744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26747 104 NaN 104810 35 0 9874.5 0.261 + 13763 KYPSPFFVF 9 46 566.2974661870231 1130.5803794408462 2 566.2973022460938 MULTI HCD FTMS 0 0 0 26744 23297.166015625 0.640682451492866 -2 0.018890380859375 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 12.240655878213236 0.2545997876781172 1 V{M(Oxidation (M))|F} 2 7 25.217 0 0 2.2304 0 0 866.427896212589 0 866.427896212589 0 7.257724967479859 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.2304 + + 16 NaN NaN 101372.2 NaN 21871 4874 26744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26749 104 NaN 37382 35 0 4333 0.327 -1 ILAMIYVLF 9 25 549.8155855435472 1097.6166181538943 2 549.8157958984375 MULTI HCD FTMS 0 0 0 26748 4252.5185546875 0.11573532230579596 10 -0.11347198486328125 1 Oxidation (M) _ILAM(Oxidation (M))IYVLF_ tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 9.347437153973935 0.2795965555214564 1 Y[{I|L}V]{M(Oxidation (M))|F} 4 -1 17.703 0 0 1.6129 0 0 557.3218250959 0 557.3218250959 0 17.703037561203843 0 0 0 0.5 0 0 0 Y[{I|L}V]{M(Oxidation (M))|F} 1.6129 + + 4 NaN NaN 93383.4 NaN 21872 4875 26748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26750 104.01 NaN 38455 35 0 4362.2 0.261 + -1 YNIKHFFMK 9 25 622.3167724609375 NaN 0 622.3167724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 6.723162845929126 0.26266733336404485 1 {I|L} 1 -1 15.485 0 0 1.2461 0 0 277.10380156074353 849.4043506834138 1126.5081522441574 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.2461 + + 2 + NaN NaN 94150.9 NaN 21873 4875 26748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26751 104.01 NaN 29790 35 0 5547.8 0.261 + 18501 MRLSFFKR 8 24 542.808343484106 NaN 0 542.8082885742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MRLSFFKR_ REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|85 2.0597508629832335 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94439.1 NaN 21874 4875 26748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26753 104.02 NaN 330910 35 0 32298 0.327 -1 0 80 452.94832185841767 1355.823136175453 3 452.9481506347656 MULTI HCD FTMS 0 0 0 26752 202775.109375 0.9585690342394121 -1 0.01293182373046875 1 NaN NaN 1 P 1 -1 9.6041 0 0 0.70836 0 0 1135.6920306840452 120.05039392642811 1255.7424246104733 0 0 0 0 0 0.5 0 0 0 P 0.70836 - 10 + NaN NaN 132647.8 NaN 21875 4876 26752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26754 104.02 NaN 406840 35 0 79398 0.261 -1 0 55 471.5170302581229 1411.5292613745687 3 471.5169372558594 MULTI HCD FTMS 0 0 0 26752 84591.8671875 0.33106190500097443 -1 0.01293182373046875 2 NaN NaN 1 ES{M(Oxidation (M))|F} 3 -1 26.198 0 0 1.856 0 0 1030.37547682272 0 1030.37547682272 0 12.218487496163561 0 0 0 0 0 0 0 ES{M(Oxidation (M))|F} 1.856 - 8 NaN NaN 141249.2 NaN 21876 4876 26752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26755 104.02 NaN 44683 35 0 9830.6 0.261 -1 0 25 629.3854362646879 628.3781597980878 1 629.38232421875 MULTI HCD FTMS 0 0 0 26752 19693.81640625 0.2722773785116972 85 -0.8758316040039062 3 NaN NaN 1 M 1 -1 1.5938 0 0 0.25364 0 0 54.03332444828158 440.28208337955317 494.31540782783475 0 0 0 0 0 0 0 0 0 M 0.25364 - 2 + NaN NaN 101311.2 NaN 21877 4876 26752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26757 104.03 NaN 72995 35 0 8293.5 0.411 + 5414 FHGPKLVPLL 10 54 560.8473819588011 NaN 0 560.8474731445312 PEAK HCD FTMS 0 0 0 26756 19239.326171875 0.965697067969617 -6 0.06482696533203125 1 Unmodified _FHGPKLVPLL_ REV__nc|ENSG00000229236|Q9BZA0|TTTY10 6.723162845929126 0.3344301934401713 1 RV 2 -1 15.701 0 0 1.4023 0 0 523.2783208020443 338.20966516666255 861.4879859687069 0 0 0 0 0 0.9247425010840047 0 0 0 RV 1.4023 - 32 + NaN NaN 112884.5 NaN 21878 4877 26756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26759 104.04 NaN 647640 35 0 201680 0.327 -1 LMCSKSCCVYF 11 47 466.52883758619043 1396.5646833587714 3 466.52880859375 MULTI HCD FTMS 0 0 0 26758 142934.46875 0.26717147608887243 1 -0.0160675048828125 1 2 Carbamidomethyl (C) _LMC(Carbamidomethyl (C))SKSC(Carbamidomethyl (C))CVYF_ ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 9.764250979337305 0.37200617284565546 1 PE{M(Oxidation (M))|F} 3 -1 31.995 0 0 2.291 0 0 1005.3761669317962 0 1005.3761669317962 0 3.438265792396251 0 0 0 0.5 0 0.3807196863200844 0 PE{M(Oxidation (M))|F} 2.291 - 17 NaN NaN 180428.6 NaN 21879 4878 26758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26760 104.04 NaN 252270 35 0 34331 0.261 -1 0 44 538.7767361961121 1075.538919459024 2 538.7767944335938 MULTI HCD FTMS 0 0 0 26758 40649.62109375 0.4127158386255876 1 -0.0160675048828125 2 NaN NaN 1 MPSS 4 -1 58.488 0 0 5.438 0 0 0 670.3581026666624 670.3581026666624 40.52887198244136 0 0 0 0 0.3807196863200844 2 0.4247425010840047 0 MPSS 5.438 - 28 + NaN NaN 126666.3 NaN 21880 4878 26758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26761 104.05 NaN 60968 35 0 6029.5 0.261 + 5415 FHGPKLVPLL 10 35 560.8473819588011 NaN 0 560.8474731445312 PEAK HCD FTMS 0 0 0 26758 9516.9619140625 0.4776935602777919 -5 0.05585479736328125 3 Unmodified _FHGPKLVPLL_ REV__nc|ENSG00000229236|Q9BZA0|TTTY10 6.723162845929126 0.3344301934401713 1 RV 2 -1 18.271 0 0 1.6318 0 0 523.2836178220958 338.20823084049067 861.4918486625866 0 0 0 0 0 0.8807196863200843 0 0 0 RV 1.6318 - 7 + NaN NaN 91964.6 NaN 21881 4878 26758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26762 104.05 NaN 65248 35 0 16389 0.261 + 31113 VTLMMRYYK 9 34 602.8142700195312 NaN 0 602.8142700195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VTLMMRYYK_ REV__ENSG00000163114|ENST00000295266|PDHA2;REV__PDHA2|p.G274Efs*6|1|0.7|ENSG00000163114|chr4:95840970-95840970|G/-|frameshift_variant 1.844237919475145 0.28630992268396543 1 P 1 -1 6.9897 0 0 0.58121 0 0 165.07448283226023 937.4500216119749 1102.5245044442352 0 0 0 0 0 0 0 0 0 P 0.58121 - 5 + NaN NaN 97350.8 NaN 21882 4878 26758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26764 104.05 NaN 248400 35 0 50412 0.327 -1 0 53 577.3487901115485 1152.683027289897 2 577.3488159179688 MULTI HCD FTMS 0 0 0 26763 47003.91015625 0.4056153980262142 -3 0.03672027587890625 1 NaN NaN 1 {I|L}R{I|L} 3 -1 12.307 0 0 1.0677 0 0 166.14892192055942 601.2347506158811 767.3836725364406 0 0 0 0 0 0 0 0 0 {I|L}R{I|L} 1.0677 - 22 + NaN NaN 125542.3 NaN 21883 4879 26763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26765 104.06 NaN 42089 35 0 8140.4 0.261 + 2131 DFRDMLVK 8 27 512.2705078125 NaN 0 512.2705078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DFRDMLVK_ REV__SOS2|p.M175R|1|0.23|ENSG00000100485|chr14:50188687-50188687|A/C|missense_variant 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82729.6 NaN 21884 4879 26763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26767 104.06 NaN 178070 35 0 14635 0.411 + 18665 MYIIPVVLF 9 65 555.816975024597 1109.619397115994 2 555.817138671875 MULTI HCD FTMS 0 0 0 26766 36215.16796875 0.03800970596272857 99 -1.033905029296875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 1 N{I|L}{I|L}V{I|L}{M(Oxidation (M))|F} 6 4 27.457 0 0 2.4745 0 0 392.19322402168126 0 392.19322402168126 0 14.441811241770122 0 0 0 1.0629529932484498 0 0 0.3807196863200844 N{I|L}{I|L}V{I|L}{M(Oxidation (M))|F} 2.4745 - 272 NaN NaN 131166.2 NaN 21885 4880 26766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26770 104.08 NaN 1199700 35 0 120680 0.411 + 25415 SERPPTYCEL 10 104 597.7770525690244 1193.5395522048486 2 597.7769775390625 MULTI HCD FTMS 0 0 0 26769 51114.578125 0.7353321121753972 -8 0.08661651611328125 1 Unmodified _SERPPTYCEL_ ENSG00000125731|ENST00000245908|SH2D3A;ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A 47.748688679222035 0.08597705450879027 1 {I|L}C{M(Oxidation (M))|F}D[{I|L}P]{M(Oxidation (M))|F}N 8 9 87.903 0 0 7.3649 0 0 0 241.09836755924064 241.09836755924064 38.59743373206257 0 0 0 0 2.5356668758921828 1.2218487496163564 0.6747425010840047 1.7689301784845295 {I|L}C{M(Oxidation (M))|F}D[{I|L}P]{M(Oxidation (M))|F}N 7.3649 - 11326 + NaN NaN 450037.2 NaN 21886 4882 26769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26772 104.08 NaN 347240 35 0 112480 0.327 + 28571 TPVDFFFEF 9 48 574.7687227696886 1147.522892606177 2 574.7686767578125 MULTI HCD FTMS 0 0 0 26771 247018.953125 0.8511772512766949 1 -0.01282501220703125 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 85.27202061508552 0.004649858145912257 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 4 61.925 0 0 5.3964 0 0 412.1974664360583 0 412.1974664360583 0 40.54953742795611 0 0 0 2.086696871556164 0 0.8494850021680094 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.3964 + + 343 + NaN NaN 136006.4 NaN 21887 4883 26771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26773 104.09 NaN 116930 35 0 11659 0.261 + -1 TPVRMMSMW 9 39 585.7594363913208 1169.5043198494416 2 585.7601318359375 MULTI HCD FTMS 0 0 0 26771 35991.46875 0.6410350048697787 -2 0.0142669677734375 2 2 Oxidation (M) _TPVRM(Oxidation (M))M(Oxidation (M))SMW_ REV__ENST00000333617.8_1_3:115805179-115805335:-|nuORF 8.745405648335112 0.2847203663274469 1 TPVD 4 -1 31.771 0 0 2.7166 0 0 0 754.2784517877561 754.2784517877561 8.58349385648225 0 0 0 0 0.7614393726401688 0 0 0 TPVD 2.7166 - 51 + NaN NaN 100168.6 NaN 21888 4883 26771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26774 104.09 NaN 175220 35 0 28646 0.261 -1 0 43 595.3779543160008 594.3706778494007 1 595.3775634765625 MULTI HCD FTMS 0 0 0 26771 21187.771484375 0.002287640720829999 -52 0.48897552490234375 3 NaN NaN 1 A{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 4 -1 5.4061 0 0 0.90955 0 0 98.10229332073011 0 98.10229332073011 0 5.406075122407686 0 0 0 0 0 0 0 A{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.90955 - 11 + NaN NaN 108953.4 NaN 21889 4883 26771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26776 104.1 NaN 53685 35 0 5405.8 0.327 + 9655 HVEEFLLT 8 34 494.26034647643513 986.5061400196703 2 494.2603454589844 MULTI HCD FTMS 0 0 0 26775 14911.40625 0.6188560844122215 1 -0.01959991455078125 1 Unmodified _HVEEFLLT_ ENSG00000184445|ENST00000333479|KNTC1 2.302733041254933 0.5385759549224092 1 W 1 8 0.48455 0 0 0.049118 0 0 475.73640842962965 321.66794763736567 797.4043560669953 0 0 0 0 0 0 0 0 0 W 0.049118 - 2 + NaN NaN 92423.5 NaN 21890 4884 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26777 104.1 NaN 48803 35 0 5436.3 0.261 + -1 LMCCKPRQ 8 35 546.7595827450266 1091.504612556853 2 546.7590942382812 MULTI HCD FTMS 0 0 0 26775 4274.51708984375 0.21673725353725787 1 -0.01959991455078125 2 2 Carbamidomethyl (C) _LMC(Carbamidomethyl (C))C(Carbamidomethyl (C))KPRQ_ REV__ENSG00000223443|ENST00000333796|USP17L2;REV__ENSG00000225327|ENST00000530484|USP17L3;REV__ENSG00000230549|ENST00000529559|USP17L1;REV__ENSG00000236125|ENST00000526929|USP17L4;REV__ENSG00000237038|ENST00000527080|USP17L8 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83582.6 NaN 21891 4884 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26778 104.11 NaN 30420 35 0 5798.3 0.261 + -1 IMLIIMIVPLI 11 27 642.9053272175913 NaN 0 642.905029296875 PEAK HCD FTMS 0 0 0 26775 13623.9189453125 0.8540574191045129 1 -0.01959991455078125 3 Oxidation (M) _IM(Oxidation (M))LIIMIVPLI_ REV__ENST00000463944.1_1_6:26426426-26428241:+|nuORF;REV__nc|ENSG00000291104|Q96KV6|BTN2A3P 1.4819007175156935 0.3379164178981577 1 {I|L} 1 -1 6.9897 0 0 0.54446 0 0 486.28396878889504 681.4072359674436 1167.6912047563387 0 0 0 0 0 0 0 0 0 {I|L} 0.54446 + + 2 + NaN NaN 86684.5 NaN 21892 4884 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26779 104.11 NaN 69494 35 0 7425.8 0.261 + 24250 RYFLPPYTF 9 36 602.3132997503807 NaN 0 602.3139038085938 PEAK HCD FTMS 0 0 0 26775 14731.7587890625 0.6785444884962956 -7 0.068023681640625 4 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.2057823575117 0.2651744870083793 1 {M(Oxidation (M))|F} 1 8 4.6041 0 0 0.38284 0 0 730.3807060908019 322.1403902643188 1052.5210963551208 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.38284 + + 3 + NaN NaN 94171.4 NaN 21893 4884 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26780 104.11 NaN 35092 35 0 5331.1 0.261 + 17800 MFLICVFCVAV 11 26 622.8173785922378 NaN 0 622.818115234375 PEAK HCD FTMS 0 0 0 26775 6126.8486328125 0.4195646591330098 -1 0.01282501220703125 5 Unmodified _MFLICVFCVAV_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 3.5964929083625545 0.33191792882328314 1 {I|L} 1 -1 6.9897 0 0 0.56204 0 0 853.4300319874068 274.08359705142817 1127.513629038835 0 0 0 0 0 0 0 0 0 {I|L} 0.56204 + + 3 + NaN NaN 92849.2 NaN 21894 4884 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26782 104.12 NaN 54607 35 0 4540.3 0.327 + 30331 VLAPLFLLT 9 31 493.8178813547732 NaN 0 493.8177185058594 PEAK HCD FTMS 0 0 0 26781 16661.376953125 0.8883756080969765 -1 0.01959991455078125 1 Unmodified _VLAPLFLLT_ REV__ENST00000376334.3_1_9:68455249-68455366:-|nuORF 4.75600775471527 0.27219989241163056 1 K 1 -1 3.4949 0 0 0.35458 0 0 718.1948924929465 136.31002222232658 854.504914715273 0 0 0 0 0 0 0 0 0 K 0.35458 - 1 + NaN NaN 87683.8 NaN 21895 4885 26781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26784 104.12 NaN 366250 35 0 100280 0.327 -1 QCLYFILI 8 41 527.7857334903274 1053.5569140474547 2 527.7857055664062 MULTI HCD FTMS 0 0 0 26783 201481.203125 0.35254742008325446 9 -0.09735870361328125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QCLYFILI_ nc|ENSG00000132204|Q9BZP3-3|LINC00470 24.67388899826682 0.4122521268485776 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 44.68 0 0 4.2409 0 0 549.2269154279312 0 549.2269154279312 0 44.680475292681265 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.2409 + + 13 NaN NaN 135718.6 NaN 21896 4886 26783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26785 104.13 NaN 91460 35 0 13570 0.261 + 29130 TYIIDLLTF 9 50 549.8070009433585 1097.599448953517 2 549.8064575195312 MULTI HCD FTMS 0 0 0 26783 12013.42578125 0.24130022489908415 -6 0.0612945556640625 2 Unmodified _TYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant;nc|ENSG00000145990|Q9NXC2-2|GFOD1 24.020572477871973 0.15282392193088168 1 {I|L}T{M(Oxidation (M))|F} 3 6 36.198 0 0 3.2979 0 0 718.3904288925595 0 718.3904288925595 0 22.21848749616356 0 0 0 1 0 0 0 + {I|L}T{M(Oxidation (M))|F} 3.2979 + + 43 NaN NaN 94403 NaN 21897 4886 26783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26786 104.13 NaN 549180 35 0 113580 0.261 + -1 DFELNCGGPV 10 54 554.2413844572618 1106.4682159813235 2 554.2417602539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _DFELNC(Carbamidomethyl (C))GGPV_ REV__ENSG00000064115|ENST00000343028|TM7SF3 15.847184025352803 0.36288280428275715 1 N[{I|L}P]DEE 6 -1 27.268 0 0 2.4644 0 0 391.1888905255875 0 391.1888905255875 0 12.518572025801545 0 0 0 0 0 0 0.4247425010840047 N[{I|L}P]DEE 2.4644 - 194 NaN NaN 169859 NaN 21898 4886 26783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26788 104.14 NaN 138740 35 0 8411.5 0.411 + 13522 KYPENFFLL 9 68 585.813261305271 1169.611969677342 2 585.8139038085938 MULTI HCD FTMS 0 0 0 26787 46176.203125 0.6680356157326517 -21 0.214935302734375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 27.435 0 0 2.3457 0 0 778.36723525215 0 778.36723525215 0 12.028937514676484 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.3457 + + 202 NaN NaN 129338.7 NaN 21899 4887 26787 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26790 104.14 NaN 197460 35 0 20647 0.327 + 8842 HLHLLVPRKLM 11 71 452.94832185841767 1355.823136175453 3 452.9482727050781 MULTI HCD FTMS 0 0 0 26789 104430.125 0.49366751360802263 11 -0.12345123291015625 1 Unmodified _HLHLLVPRKLM_ REV__ENSG00000164647|ENST00000297205|STEAP1;REV__ENST00000475789.1_1_7:89789075-89791404:+|nuORF;REV__STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant 0.4545168274142398 0.41692731010159206 1 A 1 -1 2.7642 0 0 0.20388 0 0 721.4458911576781 560.3270968072874 1281.7729879649655 0 0 0 0 0 0 0 0 0 A 0.20388 - 3 + NaN NaN 114163.5 NaN 21900 4888 26789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26791 104.15 NaN 88435 35 0 9487.2 0.261 + 13764 KYPSPFFVF 9 34 566.2974661870231 1130.5803794408462 2 566.2977905273438 MULTI HCD FTMS 0 0 0 26789 26579.892578125 0.7309588954274063 12 -0.13390350341796875 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 7 23.711 0 0 2.0973 0 0 866.4298397749916 0 866.4298397749916 0 13.253800256993953 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.0973 + + 11 NaN NaN 107462.6 NaN 21901 4888 26789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26792 104.15 NaN 21828 35 0 4158.7 0.261 + -1 GKYFKRLMC 9 17 622.8179207187802 NaN 0 623.2919921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))GKYFKRLMC(Carbamidomethyl (C))_ REV__ENST00000377328.5_1_10:18439815-18825042:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94915.4 NaN 21902 4888 26789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26794 104.16 NaN 408850 35 0 77271 0.327 -1 0 62 471.5170302581229 1411.5292613745687 3 471.5168762207031 MULTI HCD FTMS 0 0 0 26793 107360.3828125 0.4201696219420044 12 -0.13033294677734375 1 NaN NaN 1 ES{M(Oxidation (M))|F} 3 -1 26.198 0 0 1.856 0 0 1030.3742048622328 0 1030.3742048622328 0 11.249387366082999 0 0 0 0 0 0 0 ES{M(Oxidation (M))|F} 1.856 - 11 NaN NaN 156634.2 NaN 21903 4889 26793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26795 104.16 NaN 117840 35 0 10477 0.261 + 13765 KYPSPFFVF 9 39 566.2974661870231 1130.5803794408462 2 566.7753295898438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 1 V{M(Oxidation (M))|F} 2 7 27.519 0 0 2.434 0 0 866.4332015679564 0 866.4332015679564 0 9.559771852360797 0 0 0 0.805462187404089 0 0 0 + V{M(Oxidation (M))|F} 2.434 + + 38 NaN NaN 99190.7 NaN 21904 4889 26793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26797 104.17 NaN 877080 35 0 271580 0.411 -1 LMCSKSCCVYF 11 66 466.52883758619043 1396.5646833587714 3 466.52880859375 MULTI HCD FTMS 0 0 0 26796 452287.40625 0.8454104527828947 13 -0.14453887939453125 1 2 Carbamidomethyl (C) _LMC(Carbamidomethyl (C))SKSC(Carbamidomethyl (C))CVYF_ ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 9.764250979337305 0.37200617284565546 1 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}N 4 -1 54.909 0 0 3.9317 0 0 0 888.3090914361936 888.3090914361936 30.088643834802156 0 0 0 0 0.7742275032520141 1.5228787452803376 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}N 3.9317 - 42 + NaN NaN 343041.1 NaN 21905 4890 26796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26799 104.17 NaN 166930 35 0 23988 0.411 + 18467 MPWRPSRF 8 61 538.7767361961121 1075.538919459024 2 538.7764892578125 MULTI HCD FTMS 0 0 0 26798 53218.5546875 0.5403282942696436 14 -0.1567230224609375 1 Unmodified _MPWRPSRF_ REV__ENST00000288502.8_2_9:117405626-117405680:+|nuORF 7.910154910731844 0.5302565402355366 1 MPS 3 -1 33.5 0 0 3.1147 0 0 0 757.3932531936838 757.3932531936838 28.895840698003 0 0 0 0 0.3494850021680094 0 0.3807196863200844 0 MPS 3.1147 - 13 + NaN NaN 131232.5 NaN 21906 4891 26798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26801 104.18 NaN 174080 35 0 20399 0.327 -1 MYIIPVVLF 9 50 555.816975024597 1109.619397115994 2 555.8170166015625 MULTI HCD FTMS 0 0 0 26800 31215.431640625 0.032762222149118 111 -1.1387557983398438 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18003371494288972 1 {I|L}{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.5197 0 0 831.4595204084 0 831.4595204084 0 12.74227503252014 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5197 + + 82 NaN NaN 121043 NaN 21907 4892 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26802 104.19 NaN 218480 35 0 25485 0.261 + 26963 SYLLEPWFL 9 50 584.3078535728949 1166.6011542125898 2 584.307861328125 MULTI HCD FTMS 0 0 0 26800 45200.52734375 0.31692309369335003 -16 0.165191650390625 2 Unmodified _SYLLEPWFL_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 15.847184025352803 0.2234401846867398 1 E 1 8 18.372 0 0 1.5748 0 0 476.2628651349625 558.2722143194922 1034.5350794544547 0 0 0 0 0 1 0 0.28872548999643577 0 + E 1.5748 + + 111 NaN NaN 120695.5 NaN 21908 4892 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26803 104.19 NaN 54182 35 0 6169.7 0.263 + 32653 WNFLFEEPGLG 11 39 436.87995029913964 1307.6180214976189 3 437.2147216796875 MULTI HCD FTMS 0 0 0 26800 32836.2265625 0.5707061411337209 54 -0.571990966796875 3 Unmodified _WNFLFEEPGLG_ ENST00000373204.5_1_1:36387027-36387114:+|nuORF 0.5059551277355931 0.4167017191902429 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 96820.9 NaN 21909 4892 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26804 104.19 NaN 88632 35 0 12264 0.261 + 23464 RLRCEECL 8 37 511.2516249873412 NaN 0 510.7917785644531 PEAK HCD FTMS 0 0 0 26800 23456.6328125 0.6929834836323292 7 -0.086090087890625 4 Unmodified _RLRCEECL_ SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|7|1|sense 9.347437153973935 0.38822285293237185 1 E 1 7 8.9794 0 0 0.87991 0 0 657.3464373752699 231.0773104303344 888.4237478056043 0 0 0 0 0 0 0 0.5 0 + E 0.87991 + + 28 + NaN NaN 112434.7 NaN 21910 4892 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26805 104.2 NaN 41956 35 0 3447.9 0.261 + 3440 EFMIMTLT 8 30 493.24102268137176 NaN 0 493.24053955078125 PEAK HCD FTMS 0 0 0 26800 20918.9765625 0.751295237929561 -1 0.00754547119140625 5 Unmodified _EFMIMTLT_ ENST00000474965.1_1_3:112185046-112188848:-|nuORF 2.302733041254933 0.38822285293237185 1 T 1 7 5.4846 0 0 0.55711 0 0 129.93869711879978 750.4562471979124 880.3949443167121 0 0 0 0 0 0 0 0 0 + T 0.55711 + + 1 + NaN NaN 107447.8 NaN 21911 4892 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26806 104.2 NaN 51772 35 0 5968 0.261 -1 YSCCVFVYCMF 11 37 474.5187072753906 NaN 0 474.5187072753906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _YSCCVFVYC(Carbamidomethyl (C))MF_ ACER3|p.I102V|1|0.21|ENSG00000078124|chr11:76976325-76976325|A/G|missense_variant 0.5059551277355931 0.3406848944787997 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87824.3 NaN 21912 4892 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26808 104.2 NaN 188040 35 0 34296 0.327 -1 0 41 577.3487901115485 1152.683027289897 2 577.3486328125 MULTI HCD FTMS 0 0 0 26807 42251.7109375 0.3646067846745686 11 -0.1194610595703125 1 NaN NaN 1 {I|L}R 2 -1 6.4537 0 0 0.55988 0 0 166.14782328774692 714.3135470025999 880.4613702903468 0 0 0 0 0 0 0 0 0 {I|L}R 0.55988 - 9 + NaN NaN 127691.8 NaN 21913 4893 26807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26809 104.21 NaN 55609 35 0 12385 0.261 + 9876 IAFPIAFLGVA 11 30 559.8348388671875 NaN 0 559.8348388671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IAFPIAFLGVA_ REV__ENSG00000170425|ENST00000304222|ADORA2B 1.4819007175156935 0.3379164178981577 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.49072 0 0 726.3676426827658 241.22365747623283 967.5913001589986 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.49072 + + 1 + NaN NaN 103251.8 NaN 21914 4893 26807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26811 104.21 NaN 270250 35 0 80453 0.411 + 28572 TPVDFFFEF 9 65 574.7687227696886 1147.522892606177 2 574.7687377929688 MULTI HCD FTMS 0 0 0 26810 72477.0078125 0.24974108063434974 12 -0.12348175048828125 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 81.61307344734483 0.005330412723537057 1 S{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7 5 64.178 0 0 5.5928 0 0 230.10473830390782 0 230.10473830390782 0 52.1718239624075 0 0 0 2.3494850021680094 0 1.8243923658886185 0 S{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.5928 - 576 NaN NaN 180527.6 NaN 21915 4894 26810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26814 104.23 NaN 185700 35 0 26968 0.327 + 29893 VFDLQWLEL 9 38 581.8112945714074 1161.6080362096147 2 581.8109741210938 MULTI HCD FTMS 0 0 0 26813 38392.5078125 0.229550844186249 -1 0.00699615478515625 1 Unmodified _VFDLQWLEL_ ENSG00000015133|ENST00000389857|CCDC88C 32.037481411007896 0.10189719824197178 1 {I|L}QW{I|L}E{I|L} 6 3 58.889 0 0 5.0696 0 0 361.16267592597814 0 361.16267592597814 0 48.431087926598266 0 0 0 1.9247425010840047 0 0 0 + {I|L}QW{I|L}E{I|L} 5.0696 + + 128 NaN NaN 119345.6 NaN 21916 4896 26813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26815 104.23 NaN 965350 35 0 96763 0.261 + 25377 SEFFKTYIC 9 80 597.7776866494364 NaN 0 597.7767333984375 PEAK HCD FTMS 0 0 0 26813 15011.04296875 0.4570421677547527 -1 0.00699615478515625 2 Carbamidomethyl (C) _SEFFKTYIC(Carbamidomethyl (C))_ ENSG00000125741|ENST00000263275|OPA3;nc|ENSG00000125741|Q9H6K4-2|OPA3;OPA3-EML2|1|fusion 71.92227651296345 0.00563185934471025 1 E{M(Oxidation (M))|F}D[{I|L}P]N{M(Oxidation (M))|F} 7 7 67.228 0 0 5.6327 0 0 87.03338919801793 241.09761987857658 328.1310090765945 0 0 0 0 0 2.579689690656103 0 1.055462187404089 1.4802046884880937 E{M(Oxidation (M))|F}D[{I|L}P]N{M(Oxidation (M))|F} 5.6327 - 1445 + NaN NaN 245403.2 NaN 21917 4896 26813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26817 104.24 NaN 33856 35 0 2088.3 0.411 + -1 MLIGITCIITF 11 36 641.3491821289062 NaN 0 641.3491821289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _MLIGITC(Carbamidomethyl (C))IITF_ REV__ENSG00000166664|ENST00000299847|CHRFAM7A;REV__ENSG00000175344|ENST00000306901|CHRNA7;REV__nc|ENSG00000175344|P36544-2|CHRNA7 9.38312468134398 0.31550292094573573 1 {I|L} 1 -1 11.99 0 0 0.9362 0 0 923.4783244611343 241.09749780826408 1164.5758222693985 0 0 0 0 0 0.5 0 0 0 {I|L} 0.9362 + + 4 + NaN NaN 93806.6 NaN 21918 4897 26816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26819 104.25 NaN 133450 35 0 28480 0.327 -1 QCLYFILI 8 33 527.7857334903274 1053.5569140474547 2 527.7855834960938 MULTI HCD FTMS 0 0 0 26818 49468.28515625 0.08655852773004771 21 -0.21002960205078125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QCLYFILI_ nc|ENSG00000132204|Q9BZP3-3|LINC00470 12.531546534597751 0.5015908124873912 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 33.047 0 0 3.1367 0 0 549.2247181623062 0 549.2247181623062 0 31.627460726416903 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.1367 + + 7 NaN NaN 104054.6 NaN 21919 4898 26818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26820 104.25 NaN 55131 35 0 4090.2 0.261 -1 0 43 455.22518029024485 454.21790382364486 1 455.22564697265625 MULTI HCD FTMS 0 0 0 26818 38986.09375 0.462551266542083 -33 0.33621978759765625 2 NaN NaN 1 W 1 -1 0.9691 0 0 0.21336 0 0 140.07698693086985 125.03756128482657 265.1145482156964 0 0 0 0 0 0 0 0 0 W 0.21336 - 6 + NaN NaN 92826.9 NaN 21920 4898 26818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26821 104.25 NaN 85961 35 0 8225 0.261 + 15034 LLPNIFFTI 9 28 539.3205693996724 1076.6265858661448 2 539.3204345703125 MULTI HCD FTMS 0 0 0 26818 6213.27197265625 0.19517386617293553 12 -0.1290740966796875 3 Unmodified _LLPNIFFTI_ ENSG00000135317|ENST00000314673|SNX14;ENST00000508980.5_1_6:86270935-86284080:-|nuORF;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;SNX14|p.G528Wfs*4|1|0.29|ENSG00000135317|chr6:85536818-85536819|-/A|frameshift_variant 6.723162845929126 0.3000504726104499 1 E{M(Oxidation (M))|F}[{I|L}T] 4 6 15.177 0 0 1.4097 0 0 568.3606079382135 0 568.3606079382135 0 9.69273760456403 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F}[{I|L}T] 1.4097 - 10 + NaN NaN 100278 NaN 21921 4898 26818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26822 104.26 NaN 43410 35 0 6512 0.261 + 919 AYAVWALLL 9 36 510.2995910644531 NaN 0 510.2995910644531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AYAVWALLL_ ENSG00000103254|ENST00000569529|ANTKMT;ENST00000564640.5_1_16:771244-771968:+|nuORF;ENST00000566525.5_1_16:770887-771532:+|nuORF 2.302733041254933 0.2840881193086663 1 M 1 9 0.088644 0 0 0.0087026 0 0 528.0137069806657 356.50251184635005 884.5162188270158 0 0 0 0 0 0 0 0 0 M 0.0087026 - 1 + NaN NaN 96529 NaN 21922 4898 26818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26823 104.26 NaN 27118 35 0 5974.1 0.261 + 28275 TLNMFRDGEE 10 16 606.2742309570312 NaN 0 606.2742309570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TLNMFRDGEE_ ENST00000471856.1_1_1:146649692-146651075:+|nuORF 1.1933415558491238 0.33916295405077446 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96720.6 NaN 21923 4898 26818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26824 104.26 NaN 36482 35 0 6088.6 0.261 + -1 YNIKHFFMK 9 26 622.3164560003192 NaN 0 622.315673828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.2427956001690155 1 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.4281868035697 274.08213220767817 1126.510319011248 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 2 + NaN NaN 88367.9 NaN 21924 4898 26818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26827 104.28 NaN 80657 35 0 13044 0.327 + 29131 TYIIDLLTF 9 39 549.8070009433585 1097.599448953517 2 549.8071899414062 MULTI HCD FTMS 0 0 0 26826 13054.1826171875 0.26220474149158995 7 -0.06836700439453125 1 Unmodified _TYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant;nc|ENSG00000145990|Q9NXC2-2|GFOD1 41.8396318013385 0.056899836730939755 1 QD{I|L}{I|L}T{M(Oxidation (M))|F} 6 4 48.621 0 0 4.4297 0 0 362.21959120918126 0 362.21959120918126 0 33.13608784304506 0 0 0 1.5 0 0 0 QD{I|L}{I|L}T{M(Oxidation (M))|F} 4.4297 - 73 NaN NaN 94989.9 NaN 21925 4900 26826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26828 104.28 NaN 94238 35 0 9674.3 0.261 + 13766 KYPSPFFVF 9 38 566.2975877881372 1130.5806226430743 2 566.296875 MULTI HCD FTMS 0 0 0 26826 24043.486328125 0.6334013268931886 -21 0.22501373291015625 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 8.745405648335112 0.2847203663274469 1 ESW 3 8 23.188 0 0 2.0509 0 0 710.4242638557681 0 710.4242638557681 0 3.7236374744834677 0 0 0 0 0 0 0 ESW 2.0509 - 37 + NaN NaN 99549.9 NaN 21926 4900 26826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26830 104.29 NaN 458320 35 0 134500 0.327 + 20733 PFYYQVYCDAE 11 40 466.52883758619043 1396.5646833587714 3 466.52886962890625 MULTI HCD FTMS 0 0 0 26829 80690.109375 0.1508250306313278 24 -0.2344207763671875 1 Unmodified _PFYYQVYCDAE_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 6.623454094837244 0.3898724468670146 1 PE 2 -1 25.217 0 0 1.8056 0 0 1152.4436469721084 0 1152.4436469721084 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 PE 1.8056 - 4 NaN NaN 151790 NaN 21927 4901 26829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26831 104.29 NaN 296720 35 0 51600 0.261 -1 0 56 471.5170302581229 1411.5292613745687 3 471.8510437011719 MULTI HCD FTMS 0 0 0 26829 58759.92578125 0.31122362970114503 24 -0.2344207763671875 2 NaN NaN 1 SE 2 -1 22.391 0 0 1.5863 0 0 1177.4496479871732 0 1177.4496479871732 0 4.431890546242343 0 0 0 0 0 0.3807196863200844 0 SE 1.5863 - 7 NaN NaN 131797.7 NaN 21928 4901 26829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26832 104.3 NaN 677760 35 0 55555 0.261 + 10390 IMWNGSETKE 10 71 597.7770525690244 1193.5395522048486 2 598.2781982421875 MULTI HCD FTMS 0 0 0 26829 12241.60546875 0.2405559086111212 23 -0.2269744873046875 3 Unmodified _IMWNGSETKE_ REV__CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant;REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;REV__ENSG00000135837|ENST00000367607|CEP350 43.77239144664712 0.11267038882370725 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{M(Oxidation (M))|F}[{I|L}P]D{M(Oxidation (M))|F}E 9 -1 79.209 0 0 6.6365 0 0 0 84.0095746948115 84.0095746948115 53.71909351910226 0 0 0 0 2.6549471895720984 1.5228787452803376 0.6549471895720984 1.4559771852360797 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{M(Oxidation (M))|F}[{I|L}P]D{M(Oxidation (M))|F}E 6.6365 - 1823 NaN NaN 189559.9 NaN 21929 4901 26829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26833 104.3 NaN 158300 35 0 84435 0.261 + 31065 VTAGLLLLLL 10 34 513.3533863426347 NaN 0 513.3538818359375 PEAK HCD FTMS 0 0 0 26829 14349.1259765625 0.47612416430006127 -22 0.234130859375 4 Unmodified _VTAGLLLLLL_ REV__ENST00000592694.5_1_19:38795766-38795970:-|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110770.2 NaN 21930 4901 26829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26835 104.3 NaN 115760 35 0 16718 0.411 -1 0 81 452.94832185841767 1355.823136175453 3 452.9483642578125 MULTI HCD FTMS 0 0 0 26834 14298.763671875 0.06759385866447302 25 -0.24378204345703125 1 NaN NaN 1 R 1 -1 4.6041 0 0 0.33958 0 0 765.4704883256469 431.24250208072505 1196.712990406372 0 0 0 0 0 0 0 0 0 R 0.33958 - 8 + NaN NaN 130517.8 NaN 21931 4902 26834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26837 104.31 NaN 226700 35 0 51716 0.327 + 26964 SYLLEPWFL 9 45 584.3078535728949 1166.6011542125898 2 584.3084106445312 MULTI HCD FTMS 0 0 0 26836 135808.6875 0.9522213992241128 -5 0.0659332275390625 1 Unmodified _SYLLEPWFL_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 25.399314129420986 0.14091189997036632 1 {I|L}E[WP]{M(Oxidation (M))|F}{I|L} 6 3 41.471 0 0 3.5549 0 0 363.1787281720719 0 363.1787281720719 0 19.532796692927263 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + {I|L}E[WP]{M(Oxidation (M))|F}{I|L} 3.5549 + + 42 NaN NaN 122856.2 NaN 21932 4903 26836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26838 104.32 NaN 59769 35 0 6368.9 0.263 -1 ADMCTNARRVR 11 35 436.87995029913964 1307.6180214976189 3 437.214111328125 MULTI HCD FTMS 0 0 0 26836 41885.7421875 0.7279901741100073 65 -0.659027099609375 2 Oxidation (M) _ADM(Oxidation (M))CTNARRVR_ ENSG00000148411|ENST00000277554|NACC2 0.4545168274142398 0.41692731010159206 1 N 1 -1 3.9794 0 0 0.30432 0 0 871.6743702298439 318.88584314517817 1190.5602133750222 0 0 0 0 0 0 0 0 0 N 0.30432 + + 3 + NaN NaN 92239.6 NaN 21933 4903 26836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26839 104.32 NaN 94513 35 0 11096 0.261 -1 MYIIPVVLF 9 44 555.816975024597 1109.619397115994 2 555.8168334960938 MULTI HCD FTMS 0 0 0 26836 46689.65234375 0.04900322314173191 122 -1.2139968872070312 3 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18003371494288972 1 V{I|L}{M(Oxidation (M))|F} 3 -1 23.812 0 0 2.146 0 0 732.387010642775 0 732.387010642775 0 12.843181179205061 0 0 0 0 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.146 + + 13 NaN NaN 101931.1 NaN 21934 4903 26836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26841 104.32 NaN 191660 35 0 66602 0.327 -1 LRRMRAKRE 9 29 637.3651736457366 NaN 0 637.3784790039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LRRM(Oxidation (M))RAKRE_ ENST00000367569.3_1_6:144416429-144416471:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119772.9 NaN 21935 4904 26840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26844 104.34 NaN 112000 35 0 14433 0.327 + 13767 KYPSPFFVF 9 36 566.2975877881372 1130.5806226430743 2 566.2984008789062 MULTI HCD FTMS 0 0 0 26843 14072.0537109375 0.3707140208778167 -15 0.1633453369140625 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 7 27.519 0 0 2.434 0 0 866.4292646701844 0 866.4292646701844 0 17.0609971201948 0 0 0 0.805462187404089 0 0 0 + V{M(Oxidation (M))|F} 2.434 + + 15 NaN NaN 110826.9 NaN 21936 4906 26843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26845 104.34 NaN 40830 35 0 5233 0.261 + 24251 RYFLPPYTF 9 27 602.3135633607008 NaN 0 602.3134155273438 PEAK HCD FTMS 0 0 0 26843 11113.4111328125 0.49258793674032836 -4 0.03404998779296875 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.22786006501039813 1 T 1 8 10.485 0 0 0.87181 0 0 165.07765995360825 933.4633883111936 1098.541048264802 0 0 0 0 0 0.5 0 0 0 + T 0.87181 + + 2 + NaN NaN 106289.9 NaN 21937 4906 26843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26847 104.35 NaN 33260 35 0 1844.1 0.411 + 25319 SCLQLIRIHAE 11 37 641.8489379882812 NaN 0 641.8489379882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SCLQLIRIHAE_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90332 NaN 21938 4907 26846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26849 104.35 NaN 96994 35 0 6682 0.412 + 13523 KYPENFFLL 9 51 585.813261305271 1169.611969677342 2 585.813720703125 MULTI HCD FTMS 0 0 0 26848 69122.3671875 1 0 0 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 21.536976647645854 0.1742816388551942 1 ES{M(Oxidation (M))|F}{I|L}{I|L} 5 5 40.745 0 0 3.4837 0 0 562.2990311938529 0 562.2990311938529 0 25.01979729363555 0 0 0 0.8807196863200843 0 0 0 ES{M(Oxidation (M))|F}{I|L}{I|L} 3.4837 - 302 NaN NaN 115407.4 NaN 21939 4908 26848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26851 104.36 NaN 146460 35 0 35877 0.327 + 26965 SYLLEPWFL 9 32 584.3078535728949 1166.6011542125898 2 584.3079223632812 MULTI HCD FTMS 0 0 0 26850 100778.921875 0.7066105104661294 1 -0.01268768310546875 1 Unmodified _SYLLEPWFL_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 21.74664581756881 0.17247014374749275 1 E[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5 5 23.78 0 0 2.0384 0 0 561.2946161967402 0 561.2946161967402 0 21.016011860478407 0 0 0 1.5 0 0.3807196863200844 0 E[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.0384 - 17 + NaN NaN 109097.6 NaN 21940 4909 26850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26852 104.37 NaN 373620 35 0 135290 0.261 + 8846 HLPLPAHAALL 11 36 576.8475735205366 1151.680594107873 2 576.8477172851562 MULTI HCD FTMS 0 0 0 26850 47793.79296875 0.5267120861011967 1 -0.01268768310546875 2 Unmodified _HLPLPAHAALL_ ENST00000497691.5_1_6:3273291-3410459:-|nuORF 6.723162845929126 0.38943515815631113 1 A{I|L}{I|L} 3 8 29.693 0 0 2.5782 0 0 836.4637318341812 0 836.4637318341812 0 29.69273760456403 0 0 0 0.3494850021680094 0 0 0 + A{I|L}{I|L} 2.5782 + + 6 NaN NaN 137725 NaN 21941 4909 26850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26853 104.37 NaN 95165 35 0 9127.6 0.261 -1 RRQCVLVF 8 40 539.3027092626588 1076.5908655921176 2 539.8038940429688 MULTI HCD FTMS 0 0 0 26850 13650.314453125 0.5348775966083565 1 -0.01268768310546875 3 Carbamidomethyl (C) _RRQC(Carbamidomethyl (C))VLVF_ nc|ENSG00000288611|P48145|NPBWR1 13.50788311687929 0.4944073034352369 1 {I|L}V{M(Oxidation (M))|F} 3 -1 33.5 0 0 3.1117 0 0 699.3624745099625 0 699.3624745099625 0 31.28144697160131 0 0 0 0.7302046884880937 0 0 0 {I|L}V{M(Oxidation (M))|F} 3.1117 + + 12 NaN NaN 95267.8 NaN 21942 4909 26850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26855 104.37 NaN 96832 35 0 30615 0.327 + 28573 TPVDFFFEF 9 32 574.7687227696886 1147.522892606177 2 574.7691040039062 MULTI HCD FTMS 0 0 0 26854 46191.328125 0.15916595552229404 28 -0.29673004150390625 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 32.30548876998284 0.10066689432505688 1 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3 6 43.94 0 0 3.8291 0 0 706.3334458927991 0 706.3334458927991 0 41.95046257204389 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3.8291 + + 37 NaN NaN 107214 NaN 21943 4910 26854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26856 104.38 NaN 119730 35 0 12520 0.261 -1 YLYPCLII 8 41 527.7857334903274 1053.5569140474547 2 527.7852172851562 MULTI HCD FTMS 0 0 0 26854 49999.61328125 0.08748823410851425 33 -0.349090576171875 2 Carbamidomethyl (C) _YLYPC(Carbamidomethyl (C))LII_ ENSG00000185920|ENST00000331920|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant 11.114462752807354 0.5120171699125776 1 {I|L}{I|L} 2 -1 25.217 0 0 2.3935 0 0 809.3788685316947 0 809.3788685316947 0 20.154856465551987 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.3935 + + 5 NaN NaN 110426.8 NaN 21944 4910 26854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26859 104.39 NaN 38793 35 0 4845.6 0.411 + 20393 NYVKANYLPY 10 33 622.81689453125 NaN 0 622.81689453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 6.2057823575117 0.3348729994311477 1 {I|L} 1 9 6.9897 0 0 0.56205 0 0 853.4290089712604 274.0829256647094 1127.5119346359697 0 0 0 0 0 0 0 0 0 + {I|L} 0.56205 + + 2 + NaN NaN 101233 NaN 21945 4912 26858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26861 104.4 NaN 98906 35 0 8031.5 0.411 + 14527 LFDPINLVF 9 60 539.3027092626588 1076.5908655921176 2 539.8045043945312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LFDPINLVF_ ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83-3|COG5;nc|ENSG00000164597|Q9UP83|COG5 26.268140514670165 0.13340543277302316 1 N{I|L}V{M(Oxidation (M))|F} 4 5 38.047 0 0 3.5341 0 0 585.3195057599625 0 585.3195057599625 0 21.933115814076345 0 0 0 0.8494850021680094 0 0 0 + N{I|L}V{M(Oxidation (M))|F} 3.5341 + + 26 NaN NaN 129135.2 NaN 21946 4913 26860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26863 104.41 NaN 126850 35 0 20587 0.327 + 35146 YVGSIEYMKEF 11 45 455.8847958776165 NaN 0 455.8847351074219 PEAK HCD FTMS 0 0 0 26862 23294.486328125 0.37828560688174867 6 -0.0567474365234375 1 Unmodified _YVGSIEYMKEF_ REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1 4.11662792887243 0.330442455561113 1 WV 2 -1 7.4743 0 0 0.82157 0 0 489.5416731987893 132.04523645572502 621.5869096545143 0 0 0 0 0 0 0 0 0 WV 0.82157 - 5 + NaN NaN 90366.5 NaN 21947 4914 26862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26864 104.41 NaN 70872 35 0 10377 0.261 -1 SSLVLLLCLTC 11 28 639.8436850858362 1277.6728172384724 2 640.3455200195312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 2.9952420565917617 0.40578455234410343 1 W 1 -1 3.0989 0 0 0.24255 0 0 444.3138217324161 644.2602633111936 1088.5740850436098 0 0 0 0 0 0 0 0 0 W 0.24255 - 2 + NaN NaN 104063.5 NaN 21948 4914 26862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26866 104.41 NaN 70420 35 0 8484.4 0.411 + 15017 LLLSFRCLF 9 42 556.3185238891215 NaN 0 556.3182373046875 PEAK HCD FTMS 0 0 0 26865 5199.4091796875 0.2315194538358681 -1 0.00939178466796875 1 Unmodified _LLLSFRCLF_ ENST00000455785.6_1_1:26226745-26227000:-|nuORF 4.75600775471527 0.27219989241163056 1 {I|L}V 2 8 10.969 0 0 0.98765 0 0 166.08244093155616 729.3686007135374 895.4510416450935 0 0 0 0 0 0 0 0 0 {I|L}V 0.98765 - 5 + NaN NaN 106453 NaN 21949 4915 26865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26868 104.42 NaN 52782 35 0 4658.4 0.411 + 20394 NYVKANYLPY 10 47 622.8181159347165 NaN 0 622.7907104492188 PEAK HCD FTMS 0 0 0 26867 7066.79443359375 0.582906997931261 -1 0.007476806640625 1 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 6.2057823575117 0.3348729994311477 1 {I|L} 1 9 6.9897 0 0 0.56204 0 0 853.4313701713238 274.0834139459594 1127.5147841172832 0 0 0 0 0 0 0 0 0 + {I|L} 0.56204 + + 8 + NaN NaN 106873.1 NaN 21950 4916 26867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26870 104.43 NaN 86228 35 0 8037.2 0.327 + -1 GFSALLCLHD 10 41 566.7757645563328 1131.5369761794655 2 566.774169921875 MULTI HCD FTMS 0 0 0 26869 18046.09375 0.551440033999779 1 -0.009368896484375 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.42334543440173333 1 SW 2 -1 30.217 0 0 2.6704 0 0 840.4149191499718 0 840.4149191499718 0 9.247425010840047 0 0 0 0.9247425010840047 0 0 0 SW 2.6704 - 38 + NaN NaN 103746 NaN 21951 4917 26869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26871 104.43 NaN 59898 35 0 8735.5 0.261 + -1 CLMLLTFFF 9 29 604.2968232712132 1206.5790936092262 2 604.7996215820312 MULTI HCD FTMS 0 0 0 26869 16847.08984375 0.4776837330538684 -7 0.055572509765625 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LM(Oxidation (M))LLTFFF_ REV__ENSG00000168528|ENST00000373709|SERINC2;REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF;REV__nc|ENSG00000168528|Q96SA4-2|SERINC2;REV__nc|ENSG00000168528|Q96SA4-3|SERINC2;REV__nc|ENSG00000168528|Q96SA4-4|SERINC2 7.910154910731844 0.2910521888787154 1 {M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 18.2 0 0 1.5084 0 0 747.3638534346834 0 747.3638534346834 0 1.2101498947667046 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.5084 + + 11 + NaN NaN 96722 NaN 21952 4917 26869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26873 104.44 NaN 95925 35 0 18750 0.327 + 26966 SYLLEPWFL 9 27 584.3078535728949 1166.6011542125898 2 584.3076782226562 MULTI HCD FTMS 0 0 0 26872 37510.89453125 0.2630073019201735 10 -0.11557769775390625 1 Unmodified _SYLLEPWFL_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 15.847184025352803 0.2234401846867398 1 E[DC][{I|L}V]{I|L} 6 7 21.048 0 0 1.8042 0 0 476.26436049629064 0 476.26436049629064 0 21.04786736677495 0 0 0 1 0 0.28872548999643577 0 E[DC][{I|L}V]{I|L} 1.8042 - 5 NaN NaN 101116 NaN 21953 4918 26872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26874 104.44 NaN 201330 35 0 44026 0.262 + 20734 PFYYQVYCDAE 11 41 466.52883758619043 1396.5646833587714 3 466.52886962890625 MULTI HCD FTMS 0 0 0 26872 26893.4453125 0.05026892074453519 41 -0.4207916259765625 2 Unmodified _PFYYQVYCDAE_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 2.2527281973983926 0.4090409658946738 1 PE 2 -1 24.776 0 0 1.7741 0 0 1152.443895623729 0 1152.443895623729 0 21.677353201839438 0 0 0 0.3807196863200844 0 0 0 PE 1.7741 - 3 NaN NaN 116386.6 NaN 21954 4918 26872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26875 104.45 NaN 105730 35 0 22508 0.261 -1 THIIIIFLMF 10 38 632.361725242536 1262.7088975518718 2 632.3617553710938 MULTI HCD FTMS 0 0 0 26872 30331.69140625 0.25593207087917885 -11 0.09261322021484375 3 Oxidation (M) _THIIIIFLM(Oxidation (M))F_ ENSG00000184394|ENST00000641086|OR4N5 1.6526216038709556 0.46655611578153744 1 N 1 -1 8.4949 0 0 0.67275 0 0 703.3557614208156 442.2962052814566 1145.6519667022721 0 0 0 0 0 0.5 0 0 0 N 0.67275 - 4 + NaN NaN 93725.4 NaN 21955 4918 26872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26876 104.45 NaN 49227 35 0 4457.6 0.261 -1 HCLHVHLPC 9 35 586.7766152582124 NaN 0 586.7763061523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))LHVHLPC(Carbamidomethyl (C))_ nc|ENSG00000185379|O75771-7|RAD51D 2.302733041254933 0.2840881193086663 1 {I|L} 1 -1 6.9897 0 0 0.59663 0 0 297.0831854951371 758.3512056940061 1055.4343911891433 0 0 0 0 0 0 0 0 0 {I|L} 0.59663 + + 4 + NaN NaN 94939.6 NaN 21956 4918 26872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26878 104.46 NaN 81789 35 0 10695 0.326 -1 LVCRINRF 8 28 539.3027092626588 1076.5908655921176 2 539.8042602539062 MULTI HCD FTMS 0 0 0 26877 19583.990234375 0.767384345945668 10 -0.1121826171875 1 Carbamidomethyl (C) _LVC(Carbamidomethyl (C))RINRF_ ENST00000493026.2_1_17:30804487-30806484:+|nuORF 5.230669730166228 0.5342319408533849 1 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.9027 0 0 911.5121587823504 0 911.5121587823504 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.9027 + + 1 + NaN NaN 97944.5 NaN 21957 4919 26877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26880 104.46 NaN 645160 35 0 72951 0.327 -1 SCLVLIFICM 10 55 579.2930100746586 NaN 0 579.30517578125 PEAK HCD FTMS 0 0 0 26879 16360.0576171875 0.3844442387266064 53 -0.5560836791992188 1 Oxidation (M) _SCLVLIFICM(Oxidation (M))_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|229|2|anti-sense 7.289230182591677 0.3339457182549222 1 SY{I|L} 3 -1 20.005 0 0 1.7297 0 0 165.05616669775048 625.3152799730176 790.3714466707681 0 0 0 0 0 0 0 0.3807196863200844 0 SY{I|L} 1.7297 - 39 + NaN NaN 180489.2 NaN 21958 4920 26879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26881 104.47 NaN 77865 35 0 8507.6 0.261 + 23724 RQRRKRELRTF 11 37 515.9782429029688 1544.9128993091063 3 515.9788208007812 MULTI HCD FTMS 0 0 0 26879 22148.001953125 0.21028789015383065 -10 0.08798980712890625 2 Unmodified _RQRRKRELRTF_ ENSG00000163935|ENST00000394752|SFMBT1;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 0.08335046087909445 0.4185551196980541 1 M 1 11 3.0989 0 0 0.20059 0 0 1274.760996088206 136.09241663150627 1410.8534127197122 0 0 0 0 0 0 0 0 0 M 0.20059 - 6 + NaN NaN 92672.6 NaN 21959 4920 26879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26882 104.47 NaN 80564 35 0 9194.6 0.261 + 13768 KYPSPFFVF 9 32 566.2975877881372 1130.5806226430743 2 566.2987060546875 MULTI HCD FTMS 0 0 0 26879 23538.017578125 0.620085263965221 -1 0.0070343017578125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 6.723162845929126 0.3000504726104499 1 V{M(Oxidation (M))|F} 2 7 22.351 0 0 1.977 0 0 866.4320721462914 0 866.4320721462914 0 1.3821049216444514 0 0 0 0.28872548999643577 0 0 0 + V{M(Oxidation (M))|F} 1.977 + + 9 NaN NaN 90535.1 NaN 21960 4920 26879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26883 104.47 NaN 79545 35 0 13994 0.261 -1 MYIIPVVLF 9 29 555.8173928219709 NaN 0 555.8173217773438 PEAK HCD FTMS 0 0 0 26879 5873.14111328125 0.1503079514079735 -4 0.03987884521484375 4 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 14.581692164780916 0.22376707489839515 1 {I|L} 1 -1 11.99 0 0 1.0805 0 0 165.07993579272062 828.438743118582 993.5186789113027 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0805 + + 3 + NaN NaN 99181.8 NaN 21961 4920 26879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26884 104.48 NaN 68831 35 0 5329.7 0.261 + 14545 LFFVPCIFL 9 43 549.8073612145002 NaN 0 549.8076782226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LFFVPCIFL_ ENSG00000181903|ENST00000314259|OR4C6;ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000181958|Q8NGL6|OR4A15;nc|ENSG00000225997|P0C604|OR4A8 2.302733041254933 0.2840881193086663 1 V 1 8 1.9897 0 0 0.18128 0 0 407.22432828661914 588.2749117486936 995.4992400353128 0 0 0 0 0 0 0 0 0 + V 0.18128 + + 1 + NaN NaN 83792.6 NaN 21962 4920 26879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26886 104.48 NaN 704450 35 0 199060 0.327 + 28279 TLPGLLREQRD 11 43 649.3646895381664 NaN 0 649.3645629882812 PEAK HCD FTMS 0 0 0 26885 70140.3203125 0.4481820791285921 12 -0.13466644287109375 1 Unmodified _TLPGLLREQRD_ ENST00000585077.1_1_17:80397907-80398237:+|nuORF 5.731851221503515 0.3258605322397891 1 {I|L} 1 10 3.9794 0 0 0.30688 0 0 702.3444170628578 478.2728670709594 1180.6172841338173 0 0 0 0 0 0 0 0 0 + {I|L} 0.30688 + + 6 + NaN NaN 202652.7 NaN 21963 4921 26885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26887 104.49 NaN 83021 35 0 7704 0.262 + 13769 KYPSPFFVF 9 32 566.2975877881372 1130.5806226430743 2 566.2969360351562 MULTI HCD FTMS 0 0 0 26885 37959.32421875 1 0 0 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 5.731851221503515 0.3075653528928475 1 V{M(Oxidation (M))|F} 2 7 19.464 0 0 1.7216 0 0 866.4337025373062 0 866.4337025373062 0 9.006375246153906 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.7216 + + 7 NaN NaN 102729.2 NaN 21964 4921 26885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26888 104.49 NaN 123150 35 0 18903 0.261 + -1 REVMEKLMQ 9 43 590.2965483498609 1178.5785437665218 2 590.7979125976562 MULTI HCD FTMS 0 0 0 26885 8480.5546875 0.09708743334641831 -13 0.12718963623046875 3 Oxidation (M) _REVMEKLM(Oxidation (M))Q_ REV__ENSG00000173588|ENST00000397809|CEP83;REV__nc|ENSG00000173588|Q9Y592-2|CEP83 11.494710602746466 0.2610445893512368 1 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 6 -1 47.28 0 0 4.0116 0 0 0 434.1344088190063 434.1344088190063 42.67606240177031 0 0 0 0 2 1.6989700043360187 0 0 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 4.0116 - 45 + NaN NaN 110333 NaN 21965 4921 26885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26889 104.49 NaN 35625 35 0 4560 0.261 -1 VVTCVGNWF 9 23 541.2621459960938 NaN 0 541.2621459960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _VVTC(Carbamidomethyl (C))VGNWF_ ENSG00000134955|ENST00000403796|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;nc|ENSG00000134955|Q8TED4-2|SLC37A2;nc|ENSG00000134955|Q8TED4-3|SLC37A2 1.844237919475145 0.28630992268396543 1 G 1 -1 2.4743 0 0 0.22899 0 0 558.2924972638688 462.17926965885005 1020.4717669227189 0 0 0 0 0 0 0 0 0 G 0.22899 + + 1 + NaN NaN 86652.8 NaN 21966 4921 26885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26891 104.5 NaN 136250 35 0 26348 0.327 + 35190 YVLAWLLL 8 31 495.80468528098794 989.5948176287759 2 496.30584716796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YVLAWLLL_ ENSG00000197375|ENST00000245407|SLC22A5;ENST00000448810.5_1_5:131726469-131729504:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENST00000475308.1_1_5:131726319-131729961:+|nuORF;nc|ENSG00000197375|O76082-2|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5 2.8892196856762586 0.5377058178582064 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101876.7 NaN 21967 4922 26890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26892 104.5 NaN 48872 35 0 6672 0.261 + 29983 VFIPAAALDLF 11 40 588.8368497381459 NaN 0 588.8375244140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VFIPAAALDLF_ ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13 5.731851221503515 0.3258605322397891 1 K 1 11 8.9794 0 0 0.76378 0 0 541.2983199823481 503.2516268365844 1044.5499468189325 0 0 0 0 0 0.5 0 0 0 K 0.76378 - 9 + NaN NaN 97939.1 NaN 21968 4922 26890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26894 104.51 NaN 121570 35 0 15393 0.411 + -1 LCILIQIVLY 10 39 624.3727757607783 1246.7309985883564 2 624.8743286132812 MULTI HCD FTMS 0 0 0 26893 21437.4375 0.6067536253579531 -5 0.06774139404296875 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))ILIQIVLY_ REV__ENST00000399580.2_1_X:83004518-83004785:-|nuORF 1.6526216038709556 0.46655611578153744 1 M 1 -1 7.7642 0 0 0.62277 0 0 670.3703551330815 442.29655278488025 1112.6669079179617 0 0 0 0 0 0.5 0 0 0 M 0.62277 - 3 + NaN NaN 126662.9 NaN 21969 4923 26893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26896 104.51 NaN 122590 35 0 6383.3 0.411 + 3015 EADNIASIPLE 11 58 586.295547398035 1170.5765418628698 2 586.2952270507812 MULTI HCD FTMS 0 0 0 26895 56378.49609375 0.42381924971495577 -11 0.1162872314453125 1 Unmodified _EADNIASIPLE_ DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532|DMD 16.565877749689598 0.3127433757948945 1 V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[C(Carbamidomethyl (C))H]N 7 9 30.621 0 0 2.6159 0 0 285.14766127754064 0 285.14766127754064 0 4.919599297028068 0 0 0 1.4634679910804405 0 0 0 V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[C(Carbamidomethyl (C))H]N 2.6159 - 108 NaN NaN 125550.9 NaN 21970 4924 26895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26898 104.52 NaN 107600 35 0 18722 0.326 + 15750 LPFLVDLAL 9 31 500.80847234436976 999.6023917555395 2 500.8075866699219 MULTI HCD FTMS 0 0 0 26897 18747.21875 0.3334128085081787 1 -0.0126190185546875 1 Unmodified _LPFLVDLAL_ ENSG00000173064|ENST00000682272|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 11.640296217721598 0.25978676193971967 1 A{I|L} 2 7 24.776 0 0 2.4786 0 0 797.4704313048543 0 797.4704313048543 0 3.8071968632008435 0 0 0 0.3807196863200844 0 0 0 + A{I|L} 2.4786 + + 9 NaN NaN 96743.5 NaN 21971 4925 26897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26899 104.53 NaN 52334 35 0 8428.1 0.261 -1 0 31 485.3321512291621 484.3248747625621 1 485.33197021484375 MULTI HCD FTMS 0 0 0 26897 6404.33544921875 0.01453259343687746 92 -0.922149658203125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93602.8 NaN 21972 4925 26897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26900 104.53 NaN 117450 35 0 17229 0.261 + 28402 TPFLKVEPF 9 46 539.3029349779518 NaN 0 539.30224609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TPFLKVEPF_ ASNS|p.A171V|1|0.39|ENSG00000070669|chr7:97859374-97859374|G/A|missense_variant;ENSG00000070669|ENST00000394308|ASNS;nc|ENSG00000070669|P08243-2|ASNS;nc|ENSG00000070669|P08243-3|ASNS 3.944395688203298 0.27613285122220627 1 Y 1 9 5.4846 0 0 0.50944 0 0 100.08083225883486 810.4245089166624 910.5053411754973 0 0 0 0 0 0 0 0 0 Y 0.50944 - 3 + NaN NaN 101779.2 NaN 21973 4925 26897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26902 104.53 NaN 326520 35 0 46649 0.327 -1 SSLVLLLCLTC 11 50 639.8436850858362 1277.6728172384724 2 639.8441162109375 MULTI HCD FTMS 0 0 0 26901 65035.91796875 0.46735799882730983 2 -0.0204010009765625 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 8.745405648335112 0.3805662881914433 1 M 1 -1 8.0989 0 0 0.63388 0 0 701.312747821604 442.2960604303344 1143.6088082519384 0 0 0 0 0 0.5 0 0 0 M 0.63388 - 3 + NaN NaN 130421 NaN 21974 4926 26901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26903 104.54 NaN 72479 35 0 7043.2 0.262 -1 CCPCCYCCS 9 34 549.6347045898438 NaN 0 549.6347045898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))CPCCYC(Carbamidomethyl (C))CS_ ENST00000346964.6_2_3:196770181-196770280:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91500.3 NaN 21975 4926 26901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26904 104.54 NaN 64915 35 0 5075 0.261 + -1 EKPIKMSLMGL 11 24 639.8436850858362 1277.6728172384724 2 642.3492431640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Oxidation (M) _EKPIKM(Oxidation (M))SLM(Oxidation (M))GL_ REV__ENSG00000197487|ENST00000357330|GALP 1.1933415558491238 0.4136870758253112 1 M 1 -1 3.9794 0 0 0.31146 0 0 701.3122958535099 442.29633508853755 1143.6086309420475 0 0 0 0 0 0 0 0 0 M 0.31146 + + 2 + NaN NaN 109824.8 NaN 21976 4926 26901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26906 104.55 NaN 120830 35 0 15119 0.411 + 32839 WVLLTAISVFV 11 40 624.3727757607783 1246.7309985883564 2 624.3728637695312 MULTI HCD FTMS 0 0 0 26905 27587.681640625 0.7342098973595377 -4 0.0402679443359375 1 Unmodified _WVLLTAISVFV_ REV__ENSG00000165240|ENST00000341514|ATP7A;REV__nc|ENSG00000165240|Q04656-2|ATP7A;REV__nc|ENSG00000165240|Q04656-3|ATP7A;REV__nc|ENSG00000165240|Q04656-5|ATP7A 1.3295316138638542 0.4130897924953357 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 126953.8 NaN 21977 4927 26905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26908 104.55 NaN 340120 35 0 73484 0.326 -1 VYLHCGQGFRE 11 48 455.88484050135776 NaN 0 455.884765625 PEAK HCD FTMS 0 0 0 26907 65628.3125 0.3529945580231151 -7 0.0735321044921875 1 Carbamidomethyl (C) _VYLHC(Carbamidomethyl (C))GQGFRE_ ENSG00000068784|ENST00000263736|SRBD1;nc|ENSG00000068784|Q8N5C6-2|SRBD1 5.523293073838413 0.3264521516431239 1 V 1 -1 5.4846 0 0 0.60286 0 0 675.6183157909984 132.04517542056877 807.6634912115671 0 0 0 0 0 0 0 0 0 V 0.60286 + + 4 + NaN NaN 130546.8 NaN 21978 4928 26907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26909 104.56 NaN 72624 35 0 9295 0.261 + -1 CVALPSVSPMF 11 30 604.2968232712132 1206.5790936092262 2 604.2979736328125 MULTI HCD FTMS 0 0 0 26907 30221.029296875 0.6581925520614353 -3 0.03302001953125 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))VALPSVSPMF_ REV__nc|ENSG00000112763|Q7KYR7-1|BTN2A1 12.240655878213236 0.35042917576941135 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 33.94 0 0 2.8129 0 0 747.3615898764572 0 747.3615898764572 0 3.935078169319297 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8129 - 17 NaN NaN 98301 NaN 21979 4928 26907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26910 104.56 NaN 130450 35 0 22676 0.261 + 18028 MLLRVKFLMP 10 35 624.3727757607783 1246.7309985883564 2 624.3775024414062 MULTI HCD FTMS 0 0 0 26907 27296.435546875 0.7264587652642744 -3 0.03302001953125 3 Unmodified _MLLRVKFLMP_ REV__ENSG00000082898|ENST00000401558|XPO1 0.4007161486938917 0.47318265037741464 1 T 1 -1 1.5938 0 0 0.12784 0 0 878.616326812769 264.05170618228755 1142.6680329950566 0 0 0 0 0 0 0 0 0 T 0.12784 - 2 + NaN NaN 110703.6 NaN 21980 4928 26907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26912 104.57 NaN 186490 35 0 14999 0.327 + -1 CGLGVVIGYSF 11 52 586.295547398035 1170.5765418628698 2 586.29638671875 MULTI HCD FTMS 0 0 0 26911 68252.71875 0.5130824348973306 -6 0.060455322265625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GLGVVIGYSF_ REV__ENSG00000165449|ENST00000395348|SLC16A9 13.042465956692817 0.3434429782671734 1 YS{M(Oxidation (M))|F} 3 -1 33.104 0 0 2.828 0 0 755.3987904279312 0 755.3987904279312 0 12.134928107446186 0 0 0 0.8494850021680094 0 0.3807196863200844 0 YS{M(Oxidation (M))|F} 2.828 + + 43 NaN NaN 114594 NaN 21981 4929 26911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26913 104.57 NaN 88468 35 0 24019 0.261 + 11523 IYSFFEFFD 9 29 607.77383756488 1213.5331221965598 2 607.7741088867188 MULTI HCD FTMS 0 0 0 26911 30461.662109375 0.48139191054891756 -4 0.0456390380859375 2 Unmodified _IYSFFEFFD_ REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 4.75600775471527 0.31496297302216103 1 C 1 -1 2.7642 0 0 0.22778 0 0 642.3010798155036 465.1981600397094 1107.499239855213 0 0 0 0 0 0 0 0 0 C 0.22778 - 5 + NaN NaN 95286.5 NaN 21982 4929 26911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26915 104.58 NaN 289500 35 0 84675 0.327 + 20610 PEPVVEPGKRR 11 38 632.361725242536 1262.7088975518718 2 632.3619384765625 MULTI HCD FTMS 0 0 0 26914 77032.0703125 0.6499794889488513 1 -0.00940704345703125 1 Unmodified _PEPVVEPGKRR_ REV__ENST00000590288.1_3_17:74483988-74497434:-|nuORF 2.498486711656943 0.4079631525365919 1 E 1 -1 6.5938 0 0 0.52219 0 0 521.2714108348781 609.3574923150999 1130.628903149978 0 0 0 0 0 0.5 0 0 0 E 0.52219 + + 3 + NaN NaN 133472.8 NaN 21983 4930 26914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26916 104.58 NaN 141320 35 0 12207 0.264 -1 YFCQKRVYVM 10 51 451.55609980405166 NaN 0 451.5566101074219 PEAK HCD FTMS 0 0 0 26914 39706.703125 1 0 0 2 Oxidation (M) _YFCQKRVYVM(Oxidation (M))_ ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3 1.9063754702782614 0.33855269584400594 1 V 1 -1 3.4949 0 0 0.38784 0 0 666.9614447479487 132.04511438541252 799.0065591333612 0 0 0 0 0 0 0 0 0 V 0.38784 + + 2 + NaN NaN 103947.1 NaN 21984 4930 26914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26918 104.59 NaN 2676200 35 0 328900 0.327 + 31332 VWVPFIYSF 9 90 579.3051853280086 1156.5958177228172 2 579.3053588867188 MULTI HCD FTMS 0 0 0 26917 579890.375 0.5765192865691531 -4 0.0390625 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 129.2004930540761 0.0006534604433583781 1 VWVT[KQ]YS 8 4 62.198 0 0 5.3777 0 0 0 162.05599390201408 162.05599390201408 42.871221604670836 0 0 0 0 2.305462187404089 1.154901959985743 1.8243923658886185 0 VWVT[KQ]YS 5.3777 - 1160 + NaN NaN 489872 NaN 21985 4931 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26919 104.59 NaN 197570 35 0 19564 0.261 + 7306 FTRLERKRRQR 11 56 515.9782429029688 1544.9128993091063 3 515.9782104492188 MULTI HCD FTMS 0 0 0 26917 87445.9921875 0.8302705245573242 1 -0.02252960205078125 2 Unmodified _FTRLERKRRQR_ REV__ENSG00000163935|ENST00000394752|SFMBT1;REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 0.08335046087909445 0.4185551196980541 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 126841.2 NaN 21986 4931 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26920 104.59 NaN 67986 35 0 13023 0.261 + 4095 ESRSSQVSSED 11 28 605.7612694654608 NaN 0 605.7612915039062 PEAK HCD FTMS 0 0 0 26917 18190.712890625 0.5083027215807344 1 -0.02252960205078125 3 Unmodified _ESRSSQVSSED_ REV__ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;REV__ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;REV__ENSG00000145362|ENST00000357077|ANK2 2.498486711656943 0.3350326561941647 1 G 1 -1 3.9794 0 0 0.32901 0 0 685.2760046518216 464.1953219049438 1149.4713265567655 0 0 0 0 0 0 0 0 0 G 0.32901 - 4 + NaN NaN 97652.4 NaN 21987 4931 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26921 104.6 NaN 148800 35 0 21817 0.261 + 20449 PALISLLFFNL 11 28 624.3727757607783 1246.7309985883564 2 624.3709716796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PALISLLFFNL_ REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|3|1|sense 1.3295316138638542 0.4130897924953357 1 M 1 -1 6.9897 0 0 0.56064 0 0 670.3672423401127 442.29639297574613 1112.6636353158588 0 0 0 0 0 0.5 0 0 0 M 0.56064 - 2 + NaN NaN 105632.5 NaN 21988 4931 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26922 104.6 NaN 72425 35 0 8405.2 0.261 + 39 AAPPALTPLTF 11 36 549.8156127929688 NaN 0 549.8156127929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _AAPPALTPLTF_ ENST00000272462.2_1_2:110841994-110842294:-|nuORF 7.608950283845883 0.3205357427760539 1 T{I|L} 2 9 9.464 0 0 0.86223 0 0 165.08896996314758 715.3685396783811 880.4575096415288 0 0 0 0 0 0 0 0 0 T{I|L} 0.86223 - 8 + NaN NaN 101467.9 NaN 21989 4931 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26923 104.6 NaN 74503 35 0 6546 0.261 + 19164 NHMKHWLI 8 33 539.7842222816618 1077.5538916301234 2 539.80419921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NHMKHWLI_ REV__ENSG00000143845|ENST00000367202|ETNK2;REV__nc|ENSG00000143845|Q9NVF9-2|ETNK2 2.302733041254933 0.5385759549224092 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92732 NaN 21990 4931 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26926 104.62 NaN 4919200 35 0 3208300 0.327 + 33900 YLPDFLDYF 9 52 596.7819411524911 1191.549329371782 2 596.7816162109375 MULTI HCD FTMS 0 0 0 26925 237840.078125 0.5998107229466095 -2 0.02964019775390625 1 Unmodified _YLPDFLDYF_ ENSG00000081019|ENST00000261441|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant 68.08070601005525 0.009709267492204555 1 {[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}{I|L}DY{M(Oxidation (M))|F} 9 2 + 69.715 0 0 5.8508 5.8508 82.93 0 0 0 4.542425094393252 11.801375329707113 4.542425094393252 0.26802492411967194 0 1.6861818737241734 1.6989700043360187 0 0 {[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}{I|L}DY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{I|L}P{I|L}DY{M(Oxidation (M))|F};[Y{I|L}][DP]{M(Oxidation (M))|F}{I|L}DY{M(Oxidation (M))|F} 5.8508;5.8283;5.4696 -;-;+ + 101 NaN NaN 836548.9 NaN 21991 4933 26925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26927 104.62 NaN 183640 35 0 32282 0.261 -1 VWVPVFVSSC 10 38 590.2965483498609 1178.5785437665218 2 590.2966918945312 MULTI HCD FTMS 0 0 0 26925 78311.0234375 0.599968097663049 -2 0.02964019775390625 2 Carbamidomethyl (C) _VWVPVFVSSC(Carbamidomethyl (C))_ ENST00000518820.1_1_8:143560496-143561060:+|nuORF 10.823927491677226 0.4098686510432541 1 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y 7 -1 52.223 0 0 4.431 0 0 0 271.0694674127563 271.0694674127563 34.035532020140664 0 0 0 0 1.9247425010840047 1.6989700043360187 0 0 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y 4.431 - 51 + NaN NaN 109472.9 NaN 21992 4933 26925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26928 104.62 NaN 243370 35 0 44014 0.262 + 8088 GIYLLKHF 8 42 495.7931369136463 NaN 0 495.8049011230469 PEAK HCD FTMS 0 0 0 26925 7725.56298828125 1 0 0 3 Unmodified _GIYLLKHF_ tr|U7SHY6|U7SHY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02200PE=4SV=1 6.354104778181461 0.38822285293237185 1 {I|L} 1 7 5.4846 0 0 0.55423 0 0 430.23573098377375 443.22969197274296 873.4654229565167 0 0 0 0 0 0 0 0 0 + {I|L} 0.55423 + + 19 + NaN NaN 129890.7 NaN 21993 4933 26925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26929 104.63 NaN 85074 35 0 8727.8 0.261 + 15981 LPQNISLQV 9 42 506.2959999107516 NaN 0 506.29559326171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPQNISLQV_ ENSG00000106302|ENST00000223026|HYAL4 3.2813086475875832 0.27934607848455584 1 {I|L}S 2 7 4.6927 0 0 0.46436 0 0 245.137884975997 562.3006075494749 807.4384925254719 0 0 0 0 0 0 0 0 0 + {I|L}S 0.46436 + + 6 + NaN NaN 94561.1 NaN 21994 4933 26925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26931 104.63 NaN 66257 35 0 6503.6 0.327 + 17801 MFLICVFCVAV 11 34 622.8160400390625 NaN 0 622.8160400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _MFLICVFCVAV_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 3.5964929083625545 0.33191792882328314 1 N 1 -1 1.2591 0 0 0.10132 0 0 648.1070195294936 477.44736658267817 1125.5543861121719 0 0 0 0 0 0 0 0 0 N 0.10132 - 1 + NaN NaN 103525.4 NaN 21995 4934 26930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26933 104.64 NaN 207140 35 0 14268 0.411 + 31301 VWIFIMESF 9 80 586.295547398035 1170.5765418628698 2 586.2954711914062 MULTI HCD FTMS 0 0 0 26932 133024.859375 1 0 0 1 Unmodified _VWIFIMESF_ REV__nc|ENSG00000136492|Q9BX63-2|BRIP1 28.486842064014134 0.11819662193267319 1 YS{M(Oxidation (M))|F} 3 -1 36.727 0 0 3.1375 0 0 755.4000721662125 0 755.4000721662125 0 13.539171939081172 0 0 0 1.2302046884880937 0 0.4247425010840047 0 YS{M(Oxidation (M))|F} 3.1375 - 136 NaN NaN 147326.8 NaN 21996 4935 26932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26935 104.65 NaN 134170 35 0 26297 0.327 -1 LVLNYLLL 8 46 501.81536711753535 1001.6161813018707 2 501.8154602050781 MULTI HCD FTMS 0 0 0 26934 8528.1201171875 0.08738712856346317 1 -0.01262664794921875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LVLNYLLL_ ENST00000392173.6_1_19:36705808-36705937:-|nuORF 18.13498045792455 0.4603629008820478 1 C(Carbamidomethyl (C)){I|L}{I|L}{I|L} 4 -1 41.186 0 0 4.1119 0 0 484.32261855293126 0 484.32261855293126 0 34.195925227640984 0 0 0 0.9247425010840047 0 0 0 C(Carbamidomethyl (C)){I|L}{I|L}{I|L} 4.1119 - 27 NaN NaN 105967.6 NaN 21997 4936 26934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26936 104.65 NaN 129630 35 0 21948 0.261 + 2396 DPITLFVAL 9 39 494.789436785202 987.564320637204 2 494.7892761230469 MULTI HCD FTMS 0 0 0 26934 13375.9990234375 0.17919351097912625 -5 0.0593109130859375 2 Unmodified _DPITLFVAL_ ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB 15.847184025352803 0.2234401846867398 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VA{I|L} 5 5 46.766 0 0 4.7355 0 0 392.2323475568375 0 392.2323475568375 0 46.76599703664159 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VA{I|L} 4.7355 - 14 NaN NaN 107947.5 NaN 21998 4936 26934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26937 104.65 NaN 90714 35 0 7724.2 0.261 + 13770 KYPSPFFVF 9 54 566.2977825326536 1130.5810121321072 2 566.2975463867188 MULTI HCD FTMS 0 0 0 26934 24152.896484375 0.6332614636085778 -4 0.03678131103515625 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 25.49 0 0 2.2546 0 0 719.367479392775 0 719.367479392775 0 10.541134294324124 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.2546 + + 19 NaN NaN 102830.7 NaN 21999 4936 26934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26939 104.66 NaN 531090 35 0 96850 0.327 + 30487 VLYFFYTFP 9 54 598.8050291559899 1195.5955053787798 2 599.306396484375 MULTI HCD FTMS 0 0 0 26938 90629.5390625 0.556003046360663 -7 0.0813446044921875 1 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 30.224811164608877 0.11021837014094292 1 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 9 -1 + 63.567 0 0 5.3167 5.3167 92 0 0 0 21.12704280191288 58.9625938194564 21.12704280191288 63.566687589218276 0 1.8494850021680094 1.3979400086720375 0 0 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 5.3167 - 74 NaN NaN 171956.2 NaN 22000 4937 26938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26940 104.66 NaN 271050 35 0 38458 0.261 -1 SSLVLLLCLTC 11 38 639.8436850858362 1277.6728172384724 2 639.8441772460938 MULTI HCD FTMS 0 0 0 26938 38726.3671875 0.2782935650927272 13 -0.134063720703125 2 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 8.745405648335112 0.3805662881914433 1 M 1 -1 7.4743 0 0 0.58499 0 0 701.3134814543229 442.29429041080317 1143.607771865126 0 0 0 0 0 0.5 0 0 0 M 0.58499 - 3 + NaN NaN 127015.9 NaN 22001 4937 26938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26941 104.67 NaN 97784 35 0 10574 0.261 + 12263 KLNKHVKMLH 10 32 624.375078933919 NaN 0 624.3753662109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KLNKHVKMLH_ ENSG00000113088|ENST00000231009|GZMK 0.45834013312273997 0.33979201340002624 1 M 1 9 4.6041 0 0 0.36929 0 0 481.34481011217537 631.3389981559749 1112.6838082681502 0 0 0 0 0 0 0 0 0 + M 0.36929 + + 2 + NaN NaN 99248.3 NaN 22002 4937 26938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26943 104.67 NaN 59015 35 0 6109.6 0.411 + -1 RRPCISARS 9 46 551.7975463867188 NaN 0 551.7975463867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _RRPC(Carbamidomethyl (C))ISARS_ REV__ENST00000452079.5_2_1:3663585-3663774:-|nuORF 3.944395688203298 0.27613285122220627 1 H 1 -1 1.5938 0 0 0.14468 0 0 726.4365089337906 235.06434045963127 961.5008493934218 0 0 0 0 0 0 0 0 0 H 0.14468 - 5 + NaN NaN 103886.1 NaN 22003 4938 26942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26946 104.69 NaN 683920 35 0 293100 0.327 + 23329 RKAKVLLVV 9 29 513.3653120314528 NaN 0 513.353515625 PEAK HCD FTMS 0 0 0 26945 13723.8056640625 0.8607866485115433 1 -0.0156707763671875 1 Unmodified _RKAKVLLVV_ ENSG00000157152|ENST00000621198|SYN2;nc|ENSG00000157152|Q92777-2|SYN2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 189707.6 NaN 22004 4940 26945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26947 104.69 NaN 40912 35 0 6769.7 0.261 + -1 EEMEHLMFI 9 29 605.7612694654608 NaN 0 605.2958984375 PEAK HCD FTMS 0 0 0 26945 22134.021484375 0.6184905136858384 9 -0.09992218017578125 2 2 Oxidation (M) _EEM(Oxidation (M))EHLM(Oxidation (M))FI_ REV__tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1 2.0597508629832335 0.2852655770354268 1 {I|L} 1 -1 6.9897 0 0 0.5779 0 0 461.13358670724466 632.2720430963499 1093.4056298035946 0 0 0 0 0 0 0 0 0 {I|L} 0.5779 + + 4 + NaN NaN 89145 NaN 22005 4940 26945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26948 104.69 NaN 72050 35 0 8238.4 0.261 + -1 WLITKRKMR 9 23 624.375078933919 NaN 0 624.3729248046875 PEAK HCD FTMS 0 0 0 26945 20377.275390625 0.9305085314144451 1 -0.0156707763671875 3 Oxidation (M) _WLITKRKM(Oxidation (M))R_ REV__ENST00000346991.9_1_15:40939257-40942558:+|nuORF 0.5247636613948944 0.2927039108006614 1 C(Carbamidomethyl (C)) 1 -1 10.485 0 0 0.84096 0 0 641.3807598192067 442.2944522343699 1083.6752120535766 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 0.84096 - 1 + NaN NaN 98413.9 NaN 22006 4940 26945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26949 104.7 NaN 50915 35 0 6159.3 0.261 + 29804 VELKILFRAL 10 33 601.3886583114241 NaN 0 601.3883666992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VELKILFRAL_ REV__ENSG00000122970|ENST00000242591|IFT81;REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 1.4819007175156935 0.33891598740166873 1 M 1 -1 2.4743 0 0 0.20606 0 0 636.4018760937482 430.29587732486567 1066.697753418614 0 0 0 0 0 0 0 0 0 M 0.20606 - 2 + NaN NaN 96004.7 NaN 22007 4940 26945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26951 104.7 NaN 198400 35 0 35203 0.327 + -1 FMLFIIIIHT 10 49 632.361725242536 1262.7088975518718 2 632.8632202148438 MULTI HCD FTMS 0 0 0 26950 24593.298828125 0.24221970345701102 9 -0.091217041015625 1 Oxidation (M) _FM(Oxidation (M))LFIIIIHT_ REV__ENSG00000184394|ENST00000641086|OR4N5 1.6526216038709556 0.46655611578153744 1 W 1 -1 5.4846 0 0 0.43435 0 0 649.3267086864406 424.2852244440401 1073.6119331304808 0 0 0 0 0 0 0 0 0 W 0.43435 - 6 + NaN NaN 115670.1 NaN 22008 4941 26950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26952 104.71 NaN 80560 35 0 19036 0.264 + 21173 PPSHTTHP 8 41 437.21462719720097 NaN 0 437.2140197753906 PEAK HCD FTMS 0 0 0 26950 26520.359375 0.4645112258163569 -99 1.0144729614257812 2 Unmodified _PPSHTTHP_ REV__ENSG00000184956|ENST00000421673|MUC6 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101974.7 NaN 22009 4941 26950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26954 104.71 NaN 1913200 35 0 237700 0.327 + 31333 VWVPFIYSF 9 73 579.3051853280086 1156.5958177228172 2 579.30517578125 MULTI HCD FTMS 0 0 0 26953 428900.9375 0.4264075990161777 7 -0.0746612548828125 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 129.2004930540761 0.0006534604433583781 1 {[RE]|[WV]}P{M(Oxidation (M))|F}V{I|L}YS{M(Oxidation (M))|F} 9 2 + 75.116 0 0 6.4946 6.4946 93.957 0 0 0 15.341955911371059 52.87733420443657 15.341955911371059 60.34576333462972 0 1.6549471895720984 1.2218487496163564 0.3494850021680094 0 {[RE]|[WV]}P{M(Oxidation (M))|F}V{I|L}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VWV;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VWV 6.4946;1.2771;0.73061 -;-;- 966 NaN NaN 372442.7 NaN 22010 4942 26953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26955 104.72 NaN 223480 35 0 44473 0.263 + 32035 VYPNSTCK 8 32 456.2193517390483 NaN 0 456.2193908691406 PEAK HCD FTMS 0 0 0 26953 20723.52734375 0.1990551636903824 7 -0.0746612548828125 2 Unmodified _VYPNSTCK_ ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1 5.230669730166228 0.38822285293237185 1 V 1 7 6.9897 0 0 0.76774 0 0 676.2876892185279 132.04482446842033 808.3325136869482 0 0 0 0 0 0 0 0 0 + V 0.76774 + + 1 + NaN NaN 118391.4 NaN 22011 4942 26953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26956 104.72 NaN 67299 35 0 17244 0.261 + -1 LYRRSNCMD 9 25 607.77383756488 1213.5331221965598 2 607.7738647460938 MULTI HCD FTMS 0 0 0 26953 35029.5859375 0.5535797501673689 9 -0.08880615234375 3 Carbamidomethyl (C) _LYRRSNC(Carbamidomethyl (C))MD_ REV__ENST00000327574.4_1_21:45148845-45152249:+|nuORF 7.289230182591677 0.29575926068275815 1 W 1 -1 4.6041 0 0 0.3794 0 0 564.5612116514411 459.88422571353755 1024.4454373649787 0 0 0 0 0 0 0 0 0 W 0.3794 - 5 + NaN NaN 95074.2 NaN 22012 4942 26953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26958 104.72 NaN 138690 35 0 10713 0.327 + 7307 FTRLERKRRQR 11 49 515.9782429029688 1544.9128993091063 3 515.9781494140625 MULTI HCD FTMS 0 0 0 26957 67152.2890625 0.637588583197719 13 -0.11389923095703125 1 Unmodified _FTRLERKRRQR_ REV__ENSG00000163935|ENST00000394752|SFMBT1;REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 0.08335046087909445 0.4185551196980541 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 98076.4 NaN 22013 4943 26957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26959 104.73 NaN 99682 35 0 35785 0.261 -1 MPDVIDFLVL 10 31 589.3122422544392 1176.6099315756783 2 589.3123168945312 MULTI HCD FTMS 0 0 0 26957 28370.4765625 0.14135590333233503 -24 0.26813507080078125 2 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 9.38312468134398 0.42334543440173333 1 {I|L}V{I|L} 3 -1 29.693 0 0 2.5236 0 0 833.3619251935562 0 833.3619251935562 0 29.69273760456403 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.5236 + + 6 NaN NaN 117548.9 NaN 22014 4943 26957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26960 104.73 NaN 115240 35 0 8651.7 0.261 + 13524 KYPENFFLL 9 45 585.8134256075791 1169.6122982819581 2 585.8136596679688 MULTI HCD FTMS 0 0 0 26957 19568.9296875 0.3551924726205953 -10 0.1074371337890625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 1 {I|L}{I|L} 2 7 24.464 0 0 2.0916 0 0 925.4326498589139 0 925.4326498589139 0 20.969100130080562 0 0 0 0.3494850021680094 0 0 0 + {I|L}{I|L} 2.0916 + + 16 NaN NaN 106294.6 NaN 22015 4943 26957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26961 104.73 NaN 215760 35 0 58011 0.261 + 33280 YFLLQFTF 8 43 539.7842222816618 1077.5538916301234 2 539.7838745117188 MULTI HCD FTMS 0 0 0 26957 29814.568359375 0.37052286800533685 -10 0.1074371337890625 4 Unmodified _YFLLQFTF_ REV__ENSG00000152078|ENST00000370203|TLCD4 9.347437153973935 0.5250182646323369 1 P 1 -1 9.6041 0 0 0.89129 0 0 567.3059841329506 410.1718182561655 977.477802389116 0 0 0 0 0 0.5 0 0 0 P 0.89129 - 16 + NaN NaN 115554.8 NaN 22016 4943 26957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26963 104.74 NaN 46933 35 0 3676.8 0.326 + 16004 LPRDKDTPLSH 11 34 639.8436850858362 1277.6728172384724 2 641.348388671875 MULTI HCD FTMS 0 0 0 26962 6497.84033203125 0.13344821864029632 10 -0.083587646484375 1 Unmodified _LPRDKDTPLSH_ ENSG00000253309|ENST00000681248|SERPINE3;nc|ENSG00000253309|A8MV23|SERPINE3 0.4545168274142398 0.41692731010159206 1 H 1 10 3.4949 0 0 0.27353 0 0 655.4211215371037 482.15818201236567 1137.5793035494694 0 0 0 0 0 0 0 0 0 + H 0.27353 + + 1 + NaN NaN 110345.3 NaN 22017 4944 26962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26965 104.75 NaN 137020 35 0 20385 0.411 + 31329 VWTCGLLFLQ 10 64 590.3157721909366 NaN 0 590.2964477539062 PEAK HCD FTMS 0 0 0 26964 22501.986328125 0.8045897935480528 -1 0.00701904296875 1 Unmodified _VWTCGLLFLQ_ REV__ENSG00000123146|ENST00000242786|ADGRE5;REV__nc|ENSG00000123146|P48960-2|ADGRE5;REV__nc|ENSG00000123146|P48960-3|ADGRE5 6.723162845929126 0.3344301934401713 1 V{I|L}CC{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VV 8 -1 10.01 0 0 0.84931 0 0 132.0997463755903 183.05640588931877 315.1561522649091 0 0 0 0 0 0 0 0 0 V{I|L}CC{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VV 0.84931 - 77 + NaN NaN 127371.8 NaN 22018 4945 26964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26967 104.75 NaN 63443 35 0 9423.1 0.327 + 25519 SFIVPFFDQ 9 37 550.2776715535045 NaN 0 550.2777099609375 PEAK HCD FTMS 0 0 0 26966 18887.640625 0.9331787825380761 3 -0.03163909912109375 1 Unmodified _SFIVPFFDQ_ REV__chrX:152714682-152716896|136|16.68|0.02|9.44|+|ENST00000370293|MAGEA2B,MAGEA2B;REV__chrX:152733859-152736087|126|48.74|0.12|8.66|+|ENST00000357916|MAGEA12,MAGEA12;REV__chrX:152751428-152751509|195|53.73|0.18|8.22|-|ENST00000623806|MAGEA2,MAGEA2;REV__chrX:152751574-152751725|157|30.32|0.07|8.79|-|ENST00000623806|MAGEA2,MAGEA2;REV__chrX:152751574-152752394|154|37.16|0.12|8.3|-|ENST00000623438|MAGEA2,MAGEA2;REV__chrX:152751574-152753788|128|12.04|0.02|9.34|-|ENST00000611674|MAGEA2,MAGEA2;REV__chrX:152751822-152752394|141|22.9|0.06|8.69|-|ENST00000623806|MAGEA2,MAGEA2;REV__chrX:152752513-152753313|144|25.64|0.07|8.6|-|ENST00000623806|MAGEA2,MAGEA2;REV__chrX:152752513-152753788|147|21.88|0.06|8.57|-|ENST00000620710|MAGEA2,MAGEA2;REV__chrX:152753391-152753542|126|12.66|0.02|9.05|-|ENST00000623438|MAGEA2,MAGEA2;REV__chrX:152753391-152753788|137|16.46|0.03|9.03|-|ENST00000623806|MAGEA2,MAGEA2;REV__ENSG00000183305|ENST00000682532|MAGEA2B;REV__ENSG00000213401|ENST00000393869|MAGEA12;REV__ENSG00000268606|ENST00000684311|MAGEA2 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95118 NaN 22019 4946 26966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26968 104.76 NaN 44726 35 0 8560.7 0.261 + 32533 WHLSIRWKL 9 26 619.8641967773438 NaN 0 619.8641967773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _WHLSIRWKL_ ENST00000311177.6_1_17:46698590-46699007:-|nuORF 2.0597508629832335 0.2852655770354268 1 R 1 8 1.1092 0 0 0.089693 0 0 567.5805737287125 510.02283655338124 1077.6034102820936 0 0 0 0 0 0 0 0 0 + R 0.089693 + + 1 + NaN NaN 106437.7 NaN 22020 4946 26966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26969 104.76 NaN 51249 35 0 4716.2 0.262 + -1 NQLCEWCC 8 41 528.1902083205404 NaN 0 528.2716064453125 PEAK HCD FTMS 0 0 0 26966 4167.90869140625 0.3882230018530002 -1 0.0071563720703125 3 Carbamidomethyl (C) _NQLCEWC(Carbamidomethyl (C))C_ REV__ENSG00000186212|ENST00000334306|SOWAHB 0.7936320650641473 0.38822285293237185 1 Y 1 -1 1.5938 0 0 0.15116 0 0 636.1110552135432 252.1595858209594 888.2706410345025 0 0 0 0 0 0 0 0 0 Y 0.15116 - 2 + NaN NaN 93039.3 NaN 22021 4946 26966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26971 104.77 NaN 483940 35 0 94353 0.327 + 30488 VLYFFYTFP 9 52 598.8050291559899 1195.5955053787798 2 598.8048706054688 MULTI HCD FTMS 0 0 0 26970 182762.9375 0.7795487960935746 3 -0.0259246826171875 1 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 38.15118350030904 0.07383188072201104 1 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 9 -1 + 49.587 0 0 4.1475 4.1475 89.723 0 0 0 3.6646027095316214 34.882287586051106 3.6646027095316214 49.5872875024979 0 1.8494850021680094 0 0 0 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 4.1475 - 117 NaN NaN 160150.4 NaN 22022 4947 26970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26972 104.77 NaN 96632 35 0 7717.7 0.261 -1 YQALLETMF 9 40 566.273655250245 1130.53275756729 2 566.7750244140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YQALLETM(Oxidation (M))F_ ENST00000491680.6_1_2:30670231-30775468:+|nuORF 7.289230182591677 0.29575926068275815 1 SW 2 -1 24.464 0 0 2.1639 0 0 839.4114634772494 0 839.4114634772494 0 2.7815125038364386 0 0 0 0.3494850021680094 0 0 0 SW 2.1639 - 108 + NaN NaN 108961.2 NaN 22023 4947 26970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26974 104.78 NaN 588950 35 0 119220 0.327 + 30489 VLYFFYTFP 9 48 598.8050291559899 1195.5955053787798 2 598.8049926757812 MULTI HCD FTMS 0 0 0 26973 156469.703125 0.6673988192831098 4 -0.0304718017578125 1 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 38.15118350030904 0.07383188072201104 1 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 9 -1 + 63.055 0 0 5.274 5.274 91.904 0 0 0 17.132477571778182 34.6265249738142 17.132477571778182 63.05516236474446 0 1.8494850021680094 1.5228787452803376 0 0 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 5.274 - 103 NaN NaN 178583.9 NaN 22024 4948 26973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26975 104.78 NaN 81913 35 0 16915 0.261 + 11304 IYLTFPVAMF 10 29 601.3202257074192 1200.6258984816384 2 601.3197631835938 MULTI HCD FTMS 0 0 0 26973 15424.3447265625 0.056291251544767815 -14 0.14447021484375 2 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 25.399314129420986 0.2735354021946395 1 M{M(Oxidation (M))|F} 2 8 20.969 0 0 1.7465 0 0 904.5138416974625 0 904.5138416974625 0 3.979400086720375 0 0 0 0 0 0 0 + M{M(Oxidation (M))|F} 1.7465 + + 7 NaN NaN 97161.4 NaN 22025 4948 26973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26978 104.79 NaN 68086 35 0 7810.6 0.411 -1 FSFRFMLH 8 51 550.7733764648438 NaN 0 550.7733764648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _FSFRFM(Oxidation (M))LH_ ENST00000461448.5_1_1:28905087-28906119:-|nuORF 12.531546534597751 0.38822285293237185 1 {M(Oxidation (M))|F}{I|L} 2 -1 10.969 0 0 0.99937 0 0 232.16466457918267 602.2589205377561 834.4235851169387 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.99937 + + 9 + NaN NaN 119314.8 NaN 22026 4950 26977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26981 104.81 NaN 148670 35 0 17277 0.411 + 2262 DLLGTWVF 8 57 475.7527991390774 949.4910453449548 2 475.7523498535156 MULTI HCD FTMS 0 0 0 26980 61120.86328125 0.24033305153317921 -15 0.14825439453125 1 Unmodified _DLLGTWVF_ ENSG00000109861|ENST00000227266|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC 50.855029805455786 0.12247309515496523 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 8 0 + 60.896 0 0 6.4135 6.4135 93.811 0 0 0 12.85789402675583 10 10 60.895709633532746 0 1.805462187404089 1.5228787452803376 0.4247425010840047 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 6.4135 + + 100 NaN NaN 140090 NaN 22027 4952 26980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26983 104.81 NaN 83915 35 0 7202.6 0.327 + 13771 KYPSPFFVF 9 39 566.2977825326536 1130.5810121321072 2 566.2979125976562 MULTI HCD FTMS 0 0 0 26982 13186.2568359375 0.3457286503441277 13 -0.13739776611328125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 7 23.711 0 0 2.0973 0 0 866.42973525215 0 866.42973525215 0 7.513487579716767 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.0973 + + 42 NaN NaN 105391.6 NaN 22028 4953 26982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26984 104.82 NaN 28478 35 0 5605.9 0.261 + 5036 FDKFHFQKF 9 22 622.3164621502997 NaN 0 622.3163452148438 PEAK HCD FTMS 0 0 0 26982 11193.5830078125 0.46844592185552864 -5 0.03768157958984375 2 Unmodified _FDKFHFQKF_ REV__ENSG00000166228|ENST00000299299|PCBD1;REV__ENST00000493228.1_1_10:72643709-72647885:-|nuORF;REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF 3.944395688203298 0.27613285122220627 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83143.2 NaN 22029 4953 26982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26987 104.83 NaN 615860 35 0 65562 0.411 + 1632 AYYYRKFF 8 76 579.2929833281058 NaN 0 579.3053588867188 PEAK HCD FTMS 0 0 0 26986 11652.408203125 0.25245919967067926 -21 0.1985321044921875 1 Unmodified _AYYYRKFF_ ENSG00000116991|ENST00000674635|SIPA1L2;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166-3|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 11.114462752807354 0.38822285293237185 1 P{M(Oxidation (M))|F}{I|L}YS 5 7 32.961 0 0 2.8499 0 0 384.1917770074505 162.0559481256469 546.2477251330974 0 0 0 0 0 1 0 1.2070683865866922 0 P{M(Oxidation (M))|F}{I|L}YS 2.8499 - 285 + NaN NaN 265273.5 NaN 22030 4955 26986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26991 104.85 NaN 207030 35 0 97234 0.327 -1 MPDVIDFLVL 10 31 589.3122422544392 1176.6099315756783 2 589.3118896484375 MULTI HCD FTMS 0 0 0 26990 120915.65625 0.6024622737156691 -9 0.06558990478515625 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 9.38312468134398 0.42334543440173333 1 {I|L}V{I|L} 3 -1 31.198 0 0 2.6515 0 0 833.3643665998062 0 833.3643665998062 0 20.74031267727719 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.6515 + + 14 NaN NaN 111859.5 NaN 22031 4958 26990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26992 104.86 NaN 94944 35 0 8037.1 0.261 + 13525 KYPENFFLL 9 45 585.8134256075791 1169.6122982819581 2 585.8138427734375 MULTI HCD FTMS 0 0 0 26990 45512.171875 0.8260840587996398 5 -0.06475067138671875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2545997876781172 1 K{I|L}{I|L} 3 6 33.06 0 0 2.8266 0 0 797.3314686505875 0 797.3314686505875 0 15.10090614668492 0 0 0 0.5 0 0 0.4247425010840047 K{I|L}{I|L} 2.8266 - 18 NaN NaN 96528.1 NaN 22032 4958 26990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26994 104.86 NaN 135740 35 0 24524 0.327 + 35145 YVGSIEYMKEF 11 44 455.8848247139339 1364.6326447420017 3 455.8845520019531 MULTI HCD FTMS 0 0 0 26993 110617.15625 1 0 0 1 Unmodified _YVGSIEYMKEF_ REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1 2.6312355333042263 0.4073809613003177 1 VY 2 -1 44.464 0 0 3.2583 0 0 0 1099.4787644386927 1099.4787644386927 37.47425010840047 0 0 0 0 0.3494850021680094 2 0 0 VY 3.2583 - 12 + NaN NaN 119661.1 NaN 22033 4959 26993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26995 104.86 NaN 98076 35 0 21048 0.261 + 7280 FTGVLFFFT 9 33 539.7842222816618 1077.5538916301234 2 539.7838745117188 MULTI HCD FTMS 0 0 0 26993 74632.625 0.9275027539706596 6 -0.078277587890625 2 Unmodified _FTGVLFFFT_ ENSG00000111199|ENST00000261740|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-6|TRPV4 6.723162845929126 0.3000504726104499 1 P 1 9 9.6041 0 0 0.89129 0 0 567.3049730283641 410.17234216861567 977.4773151969798 0 0 0 0 0 0.5 0 0 0 P 0.89129 - 15 + NaN NaN 99806.4 NaN 22034 4959 26993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26996 104.87 NaN 67476 35 0 13457 0.261 -1 VYITRMQM 8 32 529.2627786824387 NaN 0 529.31103515625 PEAK HCD FTMS 0 0 0 26993 11592.0400390625 0.8335868919911747 4 -0.05565643310546875 3 Oxidation (M) _VYITRM(Oxidation (M))QM_ ENSG00000154975|ENST00000451037|CA10;nc|ENSG00000154975|Q9NS85-2|CA10 5.230669730166228 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111184.3 NaN 22035 4959 26993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26998 104.87 NaN 73261 35 0 7636.7 0.327 + 23369 RKQKKAML 8 36 501.81543370081 NaN 0 501.81524658203125 PEAK HCD FTMS 0 0 0 26997 26324.802734375 0.26947584571912386 1 -0.0195770263671875 1 Unmodified _RKQKKAML_ REV__ENSG00000032219|ENST00000355431|ARID4A;REV__nc|ENSG00000032219|P29374-2|ARID4A;REV__nc|ENSG00000032219|P29374-3|ARID4A 2.577480529830294 0.38822285293237185 1 Q 1 -1 5.4846 0 0 0.54757 0 0 573.4146594796096 297.1107271783813 870.5253866579908 0 0 0 0 0 0 0 0 0 Q 0.54757 + + 2 + NaN NaN 92656.1 NaN 22036 4960 26997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 26999 104.88 NaN 50932 35 0 6433.7 0.261 + 29795 VEIFNFGF 8 31 486.74403068546286 971.4735084377257 2 486.74420166015625 MULTI HCD FTMS 0 0 0 26997 14208.0927734375 0.25862496387022504 -9 0.0732879638671875 2 Unmodified _VEIFNFGF_ ENST00000519604.5_1_20:61919324-61919672:+|nuORF 16.942295170755138 0.46913822049235215 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L} 3 5 28.468 0 0 2.9304 0 0 0 627.2528170221311 627.2528170221311 7.269987279362624 0 0 0 0 0.5 1.3010299956639813 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L} 2.9304 + + 6 + NaN NaN 98306.7 NaN 22037 4960 26997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27000 104.88 NaN 91556 35 0 18462 0.261 + 35093 YVAHLLDIL 9 39 528.8089720563569 NaN 0 528.8092651367188 PEAK HCD FTMS 0 0 0 26997 19354.32421875 0.4808894583767745 -16 0.13324737548828125 3 Unmodified _YVAHLLDIL_ nc|ENSG00000138081|Q86XK2-5|FBXO11 8.593279151180031 0.2536050107310812 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93072.9 NaN 22038 4960 26997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27001 104.88 NaN 72012 35 0 9037.3 0.261 -1 MYIIPVVLF 9 33 555.8171357205512 NaN 0 555.8167114257812 PEAK HCD FTMS 0 0 0 26997 17964.51953125 0.6514891555696777 7 -0.08795928955078125 4 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18155047927120396 1 {I|L}K 2 -1 15.969 0 0 1.4392 0 0 165.07923973751514 700.3374117486936 865.4166514862088 0 0 0 0 0 0.5 0 0 0 {I|L}K 1.4392 - 6 + NaN NaN 110132.1 NaN 22039 4960 26997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27002 104.89 NaN 44362 35 0 7865.9 0.261 + 27953 TEVLFVFFN 9 31 558.2921940962144 1114.5698352592287 2 558.2913208007812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TEVLFVFFN_ REV__ENST00000493504.1_1_19:59093379-59093973:+|nuORF;REV__nc|ENSG00000123179|Q9BY08-2|EBPL 3.944395688203298 0.32111559684428237 1 {I|L} 1 -1 11.99 0 0 1.0757 0 0 575.3079466867663 423.1676119440063 998.4755586307726 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0757 + + 4 + NaN NaN 109717.6 NaN 22040 4960 26997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27004 104.9 NaN 68663 35 0 6008.3 0.411 + 2794 DYHSNVLVAN 10 53 566.273655250245 1130.53275756729 2 567.2786865234375 MULTI HCD FTMS 0 0 0 27003 14554.0732421875 0.31878759345422564 -18 0.16896820068359375 1 Unmodified _DYHSNVLVAN_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;REV__FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant 6.2057823575117 0.44245551207394906 1 SW 2 -1 17.959 0 0 1.5885 0 0 839.4106539063235 0 839.4106539063235 0 3.3547064036788754 0 0 0 0 0 0 0 SW 1.5885 - 27 + NaN NaN 107495.6 NaN 22041 4961 27003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27006 104.9 NaN 394660 35 0 85198 0.327 + 11305 IYLTFPVAMF 10 32 601.3202257074192 1200.6258984816384 2 601.31982421875 MULTI HCD FTMS 0 0 0 27005 274009.625 1 0 0 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 92.8221339359638 0.000785806387253049 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 10 0 + 83.193 0 0 6.9291 6.9291 94.159 0 0 0 5.764837301042718 76.20297202896872 5.764837301042718 42.81357210935475 0 2.4247425010840047 0 1.6549471895720984 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]AM{M(Oxidation (M))|F} 6.9291;3.3632 +;- + 92 NaN NaN 144925.2 NaN 22042 4962 27005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27007 104.91 NaN 171740 35 0 38248 0.261 + 30490 VLYFFYTFP 9 38 598.8050291559899 1195.5955053787798 2 598.8051147460938 MULTI HCD FTMS 0 0 0 27005 75165.2421875 0.3206064361673307 18 -0.20090484619140625 2 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 18.13498045792455 0.20367413111508956 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.9203 0 0 522.2844835055361 376.1506746881469 898.435158193683 0 0 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9203 + + 18 + NaN NaN 110224.1 NaN 22043 4962 27005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27008 104.91 NaN 76065 35 0 7945.4 0.261 + -1 YTLDLFSCL 9 30 566.273655250245 1130.53275756729 2 566.7749633789062 MULTI HCD FTMS 0 0 0 27005 24569.01953125 0.6216459619993225 6 -0.06725311279296875 3 Carbamidomethyl (C) _YTLDLFSC(Carbamidomethyl (C))L_ REV__TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant 4.3292370932331545 0.3181982124262546 1 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7217 0 0 866.4339580217504 0 866.4339580217504 0 9.006375246153906 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.7217 - 20 NaN NaN 90122.7 NaN 22044 4962 27005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27010 104.92 NaN 51445 35 0 10440 0.327 + 31727 VYLHRRNV 8 23 528.8089720563569 NaN 0 528.80859375 PEAK HCD FTMS 0 0 0 27009 24511.791015625 0.6090350544985283 -13 0.12337493896484375 1 Unmodified _VYLHRRNV_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 5.760428011301431 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90896.5 NaN 22045 4963 27009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27011 104.92 NaN 63405 35 0 4628.4 0.261 + 35125 YVEPIQSF 8 39 491.7477467629079 981.4809405926159 2 491.7476501464844 MULTI HCD FTMS 0 0 0 27009 19487.826171875 0.49185070419896904 -4 0.05565643310546875 2 Unmodified _YVEPIQSF_ REV__ENSG00000040199|ENST00000568954|PHLPP2;REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF;REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant 14.581692164780916 0.48650662947107914 1 P{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.6459 0 0 719.3486296568722 0 719.3486296568722 0 22.870156338638594 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 2.6459 - 12 + NaN NaN 94815.2 NaN 22046 4963 27009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27012 104.92 NaN 58139 35 0 16420 0.261 + 17802 MFLICVFCVAV 11 28 622.8180633528814 NaN 0 622.8178100585938 PEAK HCD FTMS 0 0 0 27009 10692.3955078125 0.5263542151505033 -5 0.06475067138671875 3 Unmodified _MFLICVFCVAV_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 3.5964929083625545 0.33191792882328314 1 {I|L} 1 -1 6.9897 0 0 0.56204 0 0 278.10553480947516 849.4057208233643 1127.5112556328395 0 0 0 0 0 0 0 0 0 {I|L} 0.56204 + + 2 + NaN NaN 95813.4 NaN 22047 4963 27009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27014 104.93 NaN 263800 35 0 44219 0.327 + 2263 DLLGTWVF 8 42 475.7527991390774 949.4910453449548 2 475.75238037109375 MULTI HCD FTMS 0 0 0 27013 145588.59375 0.5724682068601544 -3 0.036285400390625 1 Unmodified _DLLGTWVF_ ENSG00000109861|ENST00000227266|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC 70.71552829651908 0.028868882208589616 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 8 0 + 72.713 0 0 7.6581 7.6581 96.284 0 0 0 2.346368802282015 2.346368802282015 2.346368802282015 72.7132064533734 0 2.4247425010840047 1.5228787452803376 0.6861818737241735 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 7.6581 + + 69 NaN NaN 123739 NaN 22048 4964 27013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27015 104.93 NaN 59671 35 0 8410.3 0.261 + 35126 YVEPIQSF 8 35 491.7477467629079 981.4809405926159 2 491.74810791015625 MULTI HCD FTMS 0 0 0 27013 26655.7265625 0.6727604077063339 -3 0.036285400390625 2 Unmodified _YVEPIQSF_ REV__ENSG00000040199|ENST00000568954|PHLPP2;REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF;REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant 14.581692164780916 0.48650662947107914 1 P{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.3392 0 0 719.3491484557003 0 719.3491484557003 0 22.95880017344075 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 2.3392 - 6 + NaN NaN 90965.5 NaN 22049 4964 27013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27017 104.94 NaN 20822 35 0 1989.3 0.327 -1 SRTEKLKIMGA 11 25 625.3476570683258 NaN 0 625.333251953125 PEAK HCD FTMS 0 0 0 27016 3798.37841796875 0.44480316902028566 1 -0.0128021240234375 1 Oxidation (M) _SRTEKLKIM(Oxidation (M))GA_ ENST00000371666.7_1_X:117925898-117926057:+|nuORF 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104471 NaN 22050 4965 27016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27018 104.94 NaN 58882 35 0 13948 0.264 + -1 RMLALPLI 8 28 471.7956112472763 NaN 0 471.7953796386719 PEAK HCD FTMS 0 0 0 27016 15840.2109375 0.44846072603610826 -17 0.1622772216796875 2 Oxidation (M) _RM(Oxidation (M))LALPLI_ REV__ENSG00000188338|ENST00000614032|SLC38A3 2.8892196856762586 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102476.9 NaN 22051 4965 27016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27019 104.95 NaN 24053 35 0 5369.9 0.261 + 35338 YWPHMMLFM 9 19 628.2785123521519 NaN 0 628.27783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YWPHMMLFM_ REV__ENSG00000068831|ENST00000394432|RASGRP2;REV__nc|ENSG00000068831|Q7LDG7-2|RASGRP2;REV__nc|ENSG00000068831|Q7LDG7-3|RASGRP2;REV__nc|ENSG00000068831|Q7LDG7-4|RASGRP2 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104281.1 NaN 22052 4965 27016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27021 104.95 NaN 235560 35 0 22140 0.327 + 14785 LIHGHPSYYA 10 51 579.2929833281058 NaN 0 579.3048706054688 PEAK HCD FTMS 0 0 0 27020 20335.298828125 0.4405813096931948 -10 0.11382293701171875 1 Unmodified _LIHGHPSYYA_ REV__ENSG00000144895|ENST00000460851|EIF2A;REV__nc|ENSG00000144895|Q9BY44-2|EIF2A;REV__nc|ENSG00000144895|Q9BY44-3|EIF2A;REV__nc|ENSG00000144895|Q9BY44-4|EIF2A 4.3292370932331545 0.3364790620948225 1 SY 2 -1 10.969 0 0 0.94842 0 0 165.05688779087876 738.3984612953667 903.4553490862454 0 0 0 0 0 0 0 0 0 SY 0.94842 + + 35 + NaN NaN 120763 NaN 22053 4966 27020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27022 104.96 NaN 42526 35 0 7330.3 0.261 + 7506 FWLFAWFA 8 29 544.2739151206774 NaN 0 544.7623291015625 PEAK HCD FTMS 0 0 0 27020 5870.83740234375 0.3699968162390151 -1 0.0128021240234375 2 Unmodified _FWLFAWFA_ REV__ENSG00000100321|ENST00000328933|SYNGR1;REV__nc|ENSG00000100321|O43759-2|SYNGR1;REV__nc|ENSG00000100321|O43759-3|SYNGR1 0.7936320650641473 0.38822285293237185 1 A 1 -1 1.5938 0 0 0.14669 0 0 832.5551106595204 179.91973291568596 1012.4748435752064 0 0 0 0 0 0 0 0 0 A 0.14669 + + 1 + NaN NaN 87293.9 NaN 22054 4966 27020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27024 104.96 NaN 92474 35 0 12284 0.327 + 13772 KYPSPFFVF 9 45 566.2977062244519 1130.5808595157037 2 566.2982788085938 MULTI HCD FTMS 0 0 0 27023 31596.9609375 0.9153030173414644 -10 0.1164398193359375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 8.745405648335112 0.2847203663274469 1 V{M(Oxidation (M))|F} 2 7 22.959 0 0 2.0307 0 0 866.4339471614162 0 866.4339471614162 0 5 0 0 0 0.3494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.0307 + + 13 NaN NaN 114853.3 NaN 22055 4967 27023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27025 104.97 NaN 49272 35 0 9239.8 0.261 -1 0 26 645.3779640906597 644.3706876240597 1 645.3770141601562 MULTI HCD FTMS 0 0 0 27023 20665.966796875 0.4070630002364441 9 -0.08957672119140625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100649.9 NaN 22056 4967 27023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27027 104.97 NaN 209440 35 0 88782 0.327 -1 MPDVIDFLVL 10 32 589.3122422544392 1176.6099315756783 2 589.3123168945312 MULTI HCD FTMS 0 0 0 27026 85368.296875 0.4253475507936694 1 -0.01273345947265625 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 9.38312468134398 0.42334543440173333 1 {I|L}V{I|L} 3 -1 31.198 0 0 2.6515 0 0 833.3610707013687 0 833.3610707013687 0 22.21848749616356 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.6515 + + 11 NaN NaN 111132.6 NaN 22057 4968 27026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27028 104.97 NaN 27405 35 0 5122.9 0.261 + 11761 KDRGHDGRF 9 19 544.2739151206774 NaN 0 544.2738037109375 PEAK HCD FTMS 0 0 0 27026 3599.494873046875 0.22685037105001768 1 -0.01273345947265625 2 Unmodified _KDRGHDGRF_ REV__ENST00000263277.7_1_19:48244710-48244917:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90218.7 NaN 22058 4968 27026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27029 104.98 NaN 44002 35 0 5177.7 0.261 + 4033 ERWCQRML 8 28 561.2711840978932 NaN 0 561.2723999023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ERWCQRML_ REV__ENSG00000120156|ENST00000380036|TEK;REV__nc|ENSG00000120156|Q02763-2|TEK;REV__nc|ENSG00000120156|Q02763-3|TEK 2.0597508629832335 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100003.3 NaN 22059 4968 27026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27031 104.98 NaN 34660 35 0 3784.2 0.327 + 860 AWSPPATLFLF 11 34 625.3346656303993 NaN 0 625.3341674804688 PEAK HCD FTMS 0 0 0 27030 13932.037109375 0.37341959483582676 10 -0.11385345458984375 1 Unmodified _AWSPPATLFLF_ ENSG00000138131|ENST00000260702|LOXL4 5.731851221503515 0.3258605322397891 1 {M(Oxidation (M))|F} 1 10 6.9897 0 0 0.55978 0 0 823.4249026945892 275.13950525455317 1098.5644079491424 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.55978 + + 1 + NaN NaN 80354.2 NaN 22060 4969 27030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27032 104.99 NaN 74544 35 0 9053.1 0.262 -1 MYIIPVVLF 9 33 555.8171357205512 NaN 0 555.8165893554688 PEAK HCD FTMS 0 0 0 27030 23420.390625 0.8493480988929939 16 -0.16254425048828125 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18155047927120396 1 {I|L} 1 -1 14.49 0 0 1.3058 0 0 165.07968565664424 828.4337623878617 993.513448044506 0 0 0 0 0 0.75 0 0 0 {I|L} 1.3058 + + 5 + NaN NaN 94319.6 NaN 22061 4969 27030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27034 104.99 NaN 102520 35 0 10431 0.327 -1 KYVDIFCLL 9 35 585.8134932302556 NaN 0 585.8132934570312 PEAK HCD FTMS 0 0 0 27033 36569.15234375 0.5964395721987141 3 -0.02581024169921875 1 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ ENSG00000205413|ENST00000379958|SAMD9 12.240655878213236 0.2359303321180293 1 {I|L}{M(Oxidation (M))|F} 2 -1 13.711 0 0 1.1723 0 0 131.09886627110274 775.3447359674436 906.4436022385464 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.1723 + + 4 + NaN NaN 98570.2 NaN 22062 4970 27033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27035 105 NaN 35064 35 0 7068.9 0.261 + -1 YNIKHFFMK 9 23 622.3166754911376 NaN 0 622.317626953125 PEAK HCD FTMS 0 0 0 27033 9687.9111328125 0.3821619385636036 -2 0.02237701416015625 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 1 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.1014773477064 849.4060386186557 1126.507515966362 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 84979.7 NaN 22063 4970 27033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27037 105 NaN 84289 35 0 9382.8 0.327 + 29796 VEIFNFGF 8 45 486.74403068546286 971.4735084377257 2 486.7442626953125 MULTI HCD FTMS 0 0 0 27036 27468.296875 0.49999584040967343 2 -0.01639556884765625 1 Unmodified _VEIFNFGF_ ENST00000519604.5_1_20:61919324-61919672:+|nuORF 16.942295170755138 0.46913822049235215 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L} 3 5 29.494 0 0 3.036 0 0 0 627.2533663385374 627.2533663385374 3.524459091530403 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L} 3.036 + + 14 + NaN NaN 98091.3 NaN 22064 4971 27036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27038 105.01 NaN 119690 35 0 24611 0.261 + 14531 LFDTLVNFF 9 34 558.2921940962144 1114.5698352592287 2 558.292724609375 MULTI HCD FTMS 0 0 0 27036 21161.5703125 0.5198755875079663 4 -0.03867340087890625 2 Unmodified _LFDTLVNFF_ ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 17.11289562659939 0.2125047172822487 1 VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 46.938 0 0 4.2113 0 0 589.3123646466812 0 589.3123646466812 0 46.938200260161125 0 0 0 1.5 0 0 0 + VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2113 + + 22 NaN NaN 97843.1 NaN 22065 4971 27036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27042 105.02 NaN 320840 35 0 62427 0.327 + 11306 IYLTFPVAMF 10 36 601.3202257074192 1200.6258984816384 2 601.3201293945312 MULTI HCD FTMS 0 0 0 27041 116975.5546875 0.42690308666164556 12 -0.127532958984375 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 88.90359156742426 0.0010865658313541904 1 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 10 0 + 82.44 0 0 6.8664 6.8664 95.035 0 0 0 5.764837301042718 75.45039703980876 5.764837301042718 82.44009708316895 0 2.774227503252014 0 1.2302046884880937 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 6.8664 + + 76 NaN NaN 145040 NaN 22066 4974 27041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27043 105.03 NaN 69786 35 0 9786.6 0.261 -1 QKRKGKMVKL 10 37 616.3883152155132 NaN 0 616.387451171875 PEAK HCD FTMS 0 0 0 27041 31228 0.7176560210579347 -6 0.05469512939453125 2 Oxidation (M) _QKRKGKM(Oxidation (M))VKL_ ENSG00000123689|ENST00000367029|G0S2 1.6526216038709556 0.33876987398426067 1 M 1 -1 3.9794 0 0 0.32333 0 0 651.3843441988014 445.3087557428344 1096.6930999416359 0 0 0 0 0 0 0 0 0 M 0.32333 + + 4 + NaN NaN 92564.6 NaN 22067 4974 27041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27044 105.03 NaN 113660 35 0 21266 0.261 + 17653 LYYSFFFPL 9 38 598.8050291559899 1195.5955053787798 2 598.8047485351562 MULTI HCD FTMS 0 0 0 27041 31829.126953125 0.13576252349860674 30 -0.3025970458984375 3 Unmodified _LYYSFFFPL_ ENST00000367866.6_1_1:167388477-167388615:+|nuORF 8.593279151180031 0.2858735984551981 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 21.682 0 0 1.8135 0 0 379.1731598018892 372.1912935846313 751.3644533865205 0 0 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8135 + + 20 + NaN NaN 106954.6 NaN 22068 4974 27041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27045 105.04 NaN 21671 35 0 4761.7 0.261 + -1 DYRMHVHVH 9 22 605.2831054543694 1208.5516579755388 2 606.2554321289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _DYRM(Oxidation (M))HVHVH_ REV__ENSG00000126231|ENST00000375547|PROZ;REV__nc|ENSG00000126231|P22891-2|PROZ 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85501.2 NaN 22069 4974 27041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27047 105.04 NaN 387970 35 0 86562 0.327 + 11307 IYLTFPVAMF 10 37 601.3202257074192 1200.6258984816384 2 601.3199462890625 MULTI HCD FTMS 0 0 0 27046 40166.0625 0.14658631973238168 13 -0.12591552734375 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 81.61307344734483 0.003824874751935527 1 T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 7 3 74.028 0 0 6.1658 0 0 389.23152358222814 0 389.23152358222814 0 67.03865411098249 0 0 0 2.4247425010840047 0 1.6549471895720984 0 + T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 6.1658 + + 60 NaN NaN 154923.9 NaN 22070 4975 27046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27048 105.05 NaN 39322 35 0 7163.3 0.261 + 30101 VFVTPEWEN 9 22 560.7678833007812 NaN 0 560.7678833007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VFVTPEWEN_ REV__ENST00000584432.5_1_17:21114503-21116785:-|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91698.6 NaN 22071 4975 27046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27050 105.05 NaN 73021 35 0 7673.9 0.411 + 23101 RESPVSSPSW 10 49 566.273655250245 1130.53275756729 2 567.2785034179688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RESPVSSPSW_ REV__ENSG00000178395|ENST00000366875|CCDC185 3.2813086475875832 0.45793521633868084 1 SW 2 -1 17.959 0 0 1.5885 0 0 839.4110015429175 0 839.4110015429175 0 6.276362525516532 0 0 0 0 0 0 0 SW 1.5885 + + 29 + NaN NaN 114682.5 NaN 22072 4976 27049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27052 105.06 NaN 213990 35 0 26599 0.327 + 27001 SYLPWFEVF 9 54 594.2924521758952 1186.5703514185902 2 594.2923583984375 MULTI HCD FTMS 0 0 0 27051 262293.125 1 0 0 1 Unmodified _SYLPWFEVF_ DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion;DENND1A-NDUFA8|1|fusion;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A 56.17704186161178 0.022929533404884107 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PW{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 0 + 61.124 0 0 5.1514 5.1514 91.652 0 0 0 5.6424927368725974 50.15539695625556 5.6424927368725974 61.12449708633612 0 1.7302046884880937 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PW{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 5.1514 + + 122 NaN NaN 125317.6 NaN 22073 4977 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27053 105.06 NaN 188590 35 0 30309 0.262 + 2264 DLLGTWVF 8 37 475.7527991390774 949.4910453449548 2 475.7524719238281 MULTI HCD FTMS 0 0 0 27051 176683.171875 0.6947350474401138 10 -0.1017608642578125 2 Unmodified _DLLGTWVF_ ENSG00000109861|ENST00000227266|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC 63.562846038646086 0.043804331777645124 1 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 8 0 + 64.927 0 0 6.838 6.838 94.701 0 0 0 62.936909460092 16.40978057358332 16.40978057358332 64.92660950345218 0 1.7302046884880937 1.5228787452803376 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 6.838 + + 27 + NaN NaN 115470.2 NaN 22074 4977 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27054 105.07 NaN 51684 35 0 5069.9 0.261 -1 VYNMCHVLWK 10 32 455.88478323838564 NaN 0 455.88494873046875 PEAK HCD FTMS 0 0 0 27051 108822.1640625 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _VYNM(Oxidation (M))C(Carbamidomethyl (C))HVLWK_ ENST00000306376.9_1_3:185765226-185765490:-|nuORF 1.7422754331352037 0.33869314273211465 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87831.2 NaN 22075 4977 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27055 105.07 NaN 45409 35 0 7494.6 0.261 -1 YSLHAMNSLSA 11 30 605.2831054543694 1208.5516579755388 2 605.2837524414062 MULTI HCD FTMS 0 0 0 27051 46056.93359375 1 0 0 4 Oxidation (M) _YSLHAM(Oxidation (M))NSLSA_ ENSG00000197587|ENST00000360032|DMBX1;nc|ENSG00000197587|Q8NFW5|DMBX1 9.5439744041441 0.373925449867384 1 {I|L}[MT] 3 -1 19.705 0 0 1.6305 0 0 845.3714243099926 0 845.3714243099926 0 9.771212547196628 0 0 0 0.9247425010840047 0 0 0 {I|L}[MT] 1.6305 - 18 NaN NaN 91146.5 NaN 22076 4977 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27056 105.07 NaN 48100 35 0 5458.8 0.261 + 31628 VYIRHLEK 8 26 529.3109549668951 NaN 0 529.310791015625 PEAK HCD FTMS 0 0 0 27051 19959.46875 1 0 0 5 Unmodified _VYIRHLEK_ ENSG00000175267|ENST00000389398|VWA3A;nc|ENSG00000175267|A6NCI4-2|VWA3A;nc|ENSG00000175267|A6NCI4-3|VWA3A;nc|ENSG00000175267|A6NCI4-4|VWA3A 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102095.7 NaN 22077 4977 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27058 105.08 NaN 71652 35 0 11731 0.327 + 23338 RKKARETL 8 39 501.31454747450294 1000.6145420158059 2 501.8150939941406 MULTI HCD FTMS 0 0 0 27057 5683.58642578125 0.0624588329223637 1 -0.0195465087890625 1 Unmodified _RKKARETL_ REV__ENSG00000006837|ENST00000265334|CDKL3;REV__ENST00000519312.5_1_5:133622211-133644013:-|nuORF;REV__ENST00000520515.5_1_5:133541561-133657575:-|nuORF;REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF 0.6903765706972694 0.5409681170271811 1 V 1 -1 6.9897 0 0 0.69854 0 0 130.09590129570364 768.4282320611936 898.5241333568972 0 0 0 0 0 0 0 0 0 V 0.69854 - 1 + NaN NaN 96070.8 NaN 22078 4978 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27059 105.08 NaN 41218 35 0 4938.1 0.261 -1 LCFLPDLAF 9 29 548.2809145840058 1094.5472762348115 2 548.2808227539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))FLPDLAF_ GDF3|p.R3C|1|0.31|ENSG00000184344|chr12:7695722-7695722|G/A|missense_variant 8.593279151180031 0.2858735984551981 1 {I|L}{M(Oxidation (M))|F} 2 -1 18.979 0 0 1.734 0 0 816.3853937658647 0 816.3853937658647 0 8.521825181113625 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.734 - 8 + NaN NaN 86725.3 NaN 22079 4978 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27060 105.09 NaN 59710 35 0 6572.9 0.261 + 15068 LLWEIFSL 8 30 510.7916263304616 1019.5686997277232 2 511.2933044433594 MULTI HCD FTMS 0 0 0 27057 12013.849609375 0.38565440747688257 1 -0.0195465087890625 3 Unmodified _LLWEIFSL_ ENSG00000037280|ENST00000261937|FLT4;ENSG00000062524|ENST00000263800|LTK;ENSG00000102755|ENST00000282397|FLT1;ENSG00000122025|ENST00000241453|FLT3;ENSG00000128052|ENST00000263923|KDR;ENSG00000134853|ENST00000257290|PDGFRA;ENSG00000171094|ENST00000389048|ALK;ENSG00000182578|ENST00000675795|CSF1R;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;ENST00000563518.5_1_15:41796702-41799561:-|nuORF;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;nc|ENSG00000062524|P29376-4|LTK;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000102755|P17948-5|FLT1;nc|ENSG00000102755|P17948-6|FLT1;nc|ENSG00000102755|P17948-7|FLT1;nc|ENSG00000102755|P17948-8|FLT1;nc|ENSG00000122025|P36888-2|FLT3 26.88365393820708 0.39599352634412927 1 {I|L}{M(Oxidation (M))|F}S{I|L} 4 4 43.928 0 0 4.3085 0 0 541.2910302445742 0 541.2910302445742 0 41.70941280735775 0 0 0 1.5 0 0 0 + {I|L}{M(Oxidation (M))|F}S{I|L} 4.3085 + + 30 NaN NaN 98346.2 NaN 22080 4978 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27061 105.09 NaN 28823 35 0 4238.5 0.261 + -1 CVSMACIYMY 10 25 620.7492065429688 NaN 0 620.7492065429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))VSMACIYMY_ REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|1|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|3 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100015.2 NaN 22081 4978 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27062 105.09 NaN 37482 35 0 4201.4 0.261 -1 LRCHPWRML 9 30 642.8289078646876 NaN 0 642.8275756835938 PEAK HCD FTMS 0 0 0 27057 23606.71484375 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _LRC(Carbamidomethyl (C))HPWRM(Oxidation (M))L_ ENST00000468592.5_1_2:172300063-172325523:+|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82784.6 NaN 22082 4978 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27064 105.1 NaN 101060 35 0 8937.2 0.327 + 34794 YQVLHNLVF 9 36 566.8122811792686 NaN 0 566.7991943359375 PEAK HCD FTMS 0 0 0 27063 9935.873046875 0.8505973967257004 -1 0.0195465087890625 1 Unmodified _YQVLHNLVF_ REV__ENST00000355899.7_1_X:114884577-114884703:+|nuORF 4.75600775471527 0.27219989241163056 1 S 1 -1 5.4846 0 0 0.48467 0 0 204.16703985336 837.3910362009905 1041.5580760543505 0 0 0 0 0 0 0 0 0 S 0.48467 - 27 + NaN NaN 97580.1 NaN 22083 4979 27063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27066 105.1 NaN 237480 35 0 70651 0.411 -1 MPDVIDFLVL 10 66 589.3122422544392 1176.6099315756783 2 589.312255859375 MULTI HCD FTMS 0 0 0 27065 102403.5859375 0.510225880865152 13 -0.11798858642578125 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 14.838274106304384 0.3723198072575719 1 D{I|L}P[C(Carbamidomethyl (C))C]{I|L}V{I|L} 8 -1 45.597 0 0 3.8753 0 0 245.13755995918126 0 245.13755995918126 0 24.654725401081734 0 0 0 0.7742275032520141 0 0.75 0 D{I|L}P[C(Carbamidomethyl (C))C]{I|L}V{I|L} 3.8753 - 305 NaN NaN 161183.2 NaN 22084 4980 27065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27068 105.11 NaN 162020 35 0 19756 0.326 + -1 WVHGVNVLSM 10 47 579.2929833281058 NaN 0 579.3049926757812 PEAK HCD FTMS 0 0 0 27067 22630.76171875 0.49031443902911315 4 -0.03437042236328125 1 Oxidation (M) _WVHGVNVLSM(Oxidation (M))_ REV__ENSG00000103227|ENST00000262301|LMF1;REV__ENST00000566609.1_1_16:1002623-1020980:-|nuORF;REV__ENST00000568897.5_1_16:1004355-1020830:-|nuORF 3.2813086475875832 0.33737594360511275 1 SY 2 -1 10.969 0 0 0.94842 0 0 165.06106424242188 738.399103176822 903.4601674192438 0 0 0 0 0 0 0 0 0 SY 0.94842 - 11 + NaN NaN 107889 NaN 22085 4981 27067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27069 105.12 NaN 71116 35 0 9138 0.261 + 28918 TWPDCLLPLL 10 34 585.8134932302556 NaN 0 585.8134765625 PEAK HCD FTMS 0 0 0 27067 23413.283203125 0.3818685346100425 14 -0.129638671875 2 Unmodified _TWPDCLLPLL_ ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1 3.2813086475875832 0.33737594360511275 1 {I|L} 1 9 6.9897 0 0 0.59761 0 0 131.09363861745288 922.4093093634654 1053.5029479809182 0 0 0 0 0 0 0 0 0 + {I|L} 0.59761 + + 2 + NaN NaN 94038 NaN 22086 4981 27067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27070 105.12 NaN 52130 35 0 8009.6 0.261 -1 MYIIPVVLF 9 24 555.8171357205512 NaN 0 555.8170166015625 PEAK HCD FTMS 0 0 0 27067 14020.0302734375 0.508440967097079 26 -0.247894287109375 3 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 9.347437153973935 0.2499504662953367 1 {I|L} 1 -1 15.797 0 0 1.4236 0 0 165.08032074144143 828.4350620628535 993.5153828042949 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L} 1.4236 + + 5 + NaN NaN 84348.1 NaN 22087 4981 27067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27072 105.12 NaN 57517 35 0 5345.1 0.411 + 22554 QSHFHPPIF 9 62 555.2787989955344 NaN 0 555.2799072265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _QSHFHPPIF_ REV__ENST00000594305.1_1_19:49467651-49468248:+|nuORF 7.910154910731844 0.25691533546754686 1 {I|L} 1 -1 5.4846 0 0 0.49475 0 0 164.00027269634376 828.4443453424436 992.4446180387874 0 0 0 0 0 0 0 0 0 {I|L} 0.49475 + + 6 + NaN NaN 101090.2 NaN 22088 4982 27071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27075 105.14 NaN 50296 35 0 7403.4 0.411 + 2240 DLDDSTDT 8 45 441.173611202716 NaN 0 440.79931640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _DLDDSTDT_ REV__ENSG00000154153|ENST00000306320|RETREG1;REV__nc|ENSG00000154153|Q9H6L5-2|RETREG1 2.302733041254933 0.38822285293237185 1 H 1 -1 6.9897 0 0 0.79398 0 0 303.4836837318008 436.76828943424067 740.2519731660415 0 0 0 0 0 0 0 0 0 H 0.79398 - 1 + NaN NaN 111876.2 NaN 22089 4984 27074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27078 105.15 NaN 444680 35 0 75921 0.412 + 345 AGWNAYIDNL 10 84 589.7775975403262 1177.5406421474522 2 589.7774658203125 MULTI HCD FTMS 0 0 0 27077 147857.578125 0.3613368120045162 -14 0.1410064697265625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 124.953037156858 2.971737173510385E-05 1 GWNAY{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 9 1 93.356 0 0 7.9281 0 0 113.05332578267219 0 113.05332578267219 0 66.53847894909222 0 0 0 2.6549471895720984 0 1.8943525400371293 1.642642683904553 + GWNAY{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 7.9281 + + 1878 + NaN NaN 218228.6 NaN 22090 4986 27077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27081 105.17 NaN 272430 35 0 41819 0.327 -1 0 51 615.4046298549006 614.3973533883005 1 615.3939208984375 MULTI HCD FTMS 0 0 0 27080 10682.6787109375 0.3527309063368279 -3 0.0211029052734375 1 NaN NaN 1 [YN]AW 4 -1 32.893 0 0 5.3536 0 0 0 77.15050215222553 77.15050215222553 30.41833743429045 0 0 0 0 0 1.6989700043360187 0 0.6861818737241735 [YN]AW 5.3536 - 18 NaN NaN 122593.3 NaN 22091 4988 27080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27082 105.17 NaN 70374 35 0 6795.3 0.261 + 32568 WIPSCRPSW 9 39 566.273655250245 1130.53275756729 2 567.27685546875 MULTI HCD FTMS 0 0 0 27080 32464.646484375 0.7110948497288565 6 -0.0646820068359375 2 Unmodified _WIPSCRPSW_ ENST00000379388.6_1_6:12123326-12123377:+|nuORF 4.3292370932331545 0.3181982124262546 1 PS{[QG]|[NA]} 4 7 16.198 0 0 1.4328 0 0 743.3697376935562 0 743.3697376935562 0 1.249387366082999 0 0 0 0 0 0 0 PS{[QG]|[NA]} 1.4328 - 14 NaN NaN 96190.2 NaN 22092 4988 27080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27083 105.17 NaN 60466 35 0 14658 0.262 + 14995 LLLIQITE 8 29 471.7956112472763 NaN 0 471.79559326171875 PEAK HCD FTMS 0 0 0 27080 19348.158203125 0.5477761066106334 4 -0.04775238037109375 3 Unmodified _LLLIQITE_ ENSG00000198765|ENST00000369522|SYCP1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96722 NaN 22093 4988 27080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27084 105.18 NaN 59109 35 0 10294 0.261 -1 0 36 647.3937165433381 646.386440076738 1 647.3931884765625 MULTI HCD FTMS 0 0 0 27080 38415.84765625 0.9609781274773913 -10 0.0893402099609375 4 NaN NaN 1 V 1 -1 3.9794 0 0 0.61564 0 0 324.2304475003693 220.0648592584594 544.2953067588287 0 0 0 0 0 0 0 0 0 V 0.61564 - 5 + NaN NaN 90795.4 NaN 22094 4988 27080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27086 105.18 NaN 275560 35 0 35685 0.327 + 27002 SYLPWFEVF 9 45 594.2924521758952 1186.5703514185902 2 594.2921752929688 MULTI HCD FTMS 0 0 0 27085 77599.96875 0.29585208819331427 11 -0.109588623046875 1 Unmodified _SYLPWFEVF_ DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion;DENND1A-NDUFA8|1|fusion;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A 71.92227651296345 0.008466197542043549 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PW{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 0 + 81.036 0 0 6.8294 6.8294 94.968 0 0 0 7.147642715192504 70.0667531214534 7.147642715192504 81.03585325153396 0 2.2614393726401687 0 0.3807196863200844 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PW{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 6.8294 + + 160 NaN NaN 133752.9 NaN 22095 4989 27085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27087 105.19 NaN 205210 35 0 16038 0.263 + 21269 PRPGRPRRPRR 11 73 467.62374601666363 1399.849408650191 3 467.6238098144531 MULTI HCD FTMS 0 0 0 27085 91054.90625 0.3573120023741034 -11 0.10512542724609375 2 Unmodified _PRPGRPRRPRR_ ENST00000296350.9_1_3:196729451-196730141:-|nuORF 1.3296431237094175 0.4130893034510334 1 P 1 10 6.2371 0 0 0.44556 0 0 853.5235552339785 446.25071130924067 1299.7742665432193 0 0 0 0 0 0.4247425010840047 0 0 0 + P 0.44556 + + 11 + NaN NaN 120593.7 NaN 22096 4989 27085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27088 105.19 NaN 33211 35 0 4744.9 0.261 + -1 FKCYFYLCV 9 21 621.7869873046875 NaN 0 621.7869873046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FKCYFYLC(Carbamidomethyl (C))V_ REV__ENSG00000110675|ENST00000265840|ELMOD1;REV__nc|ENSG00000110675|Q8N336-3|ELMOD1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85609.9 NaN 22097 4989 27085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27090 105.2 NaN 98417 35 0 12762 0.327 + 11308 IYLTFPVAMF 10 42 601.3201993706477 1200.6258458080954 2 601.3198852539062 MULTI HCD FTMS 0 0 0 27089 30602.609375 0.5217101304796752 4 -0.0359649658203125 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 25.399314129420986 0.2735354021946395 1 AM{M(Oxidation (M))|F} 3 7 26.682 0 0 2.2224 0 0 833.4669056623062 0 833.4669056623062 0 15.713337517843655 0 0 0 0.5 0 0 0 + AM{M(Oxidation (M))|F} 2.2224 + + 21 NaN NaN 97272.6 NaN 22098 4990 27089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27091 105.2 NaN 46041 35 0 11964 0.261 + 33675 YKLCLGKLLKV 11 23 639.4036648685466 NaN 0 639.4032592773438 PEAK HCD FTMS 0 0 0 27089 10474.24609375 0.4715795534726272 5 -0.04544830322265625 2 Unmodified _YKLCLGKLLKV_ REV__ENSG00000085831|ENST00000680483|TTC39A;REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A;REV__nc|ENSG00000085831|Q5SRH9-4|TTC39A;REV__nc|ENSG00000085831|Q5SRH9-6|TTC39A;REV__nc|ENSG00000085831|Q5SRH9|TTC39A 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91595.2 NaN 22099 4990 27089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27093 105.2 NaN 77491 35 0 8425.5 0.327 -1 CLLCRRQF 8 39 548.2809269287472 1094.5473009242944 2 548.2805786132812 MULTI HCD FTMS 0 0 0 27092 15544.259765625 0.2000298637527231 -4 0.04534149169921875 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLCRRQF_ ENSG00000003756|ENST00000347869|RBM5;ENSG00000004534|ENST00000266022|RBM6;ENSG00000182872|ENST00000377604|RBM10;ENST00000421682.1_1_3:50103854-50112609:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000464988.1_1_3:50152821-50154632:+|nuORF;ENST00000475590.5_1_3:50151466-50154632:+|nuORF;ENST00000479275.1_1_3:50152821-50153476:+|nuORF;ENST00000492430.1_1_3:50151648-50153476:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;nc|ENSG00000182872|P98175-2|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-5|RBM10;RBM6|p.N966I|1|0.44|ENSG00000004534|chr3:50066456-50066456|A/T|missense_variant 15.768221252438446 0.4777766048089751 1 SW{I|L}{M(Oxidation (M))|F} 4 -1 32.027 0 0 2.926 0 0 543.271252195582 0 543.271252195582 0 10.064119211036626 0 0 0 1 0 0 0 SW{I|L}{M(Oxidation (M))|F} 2.926 - 26 + NaN NaN 92341.8 NaN 22100 4991 27092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27094 105.21 NaN 105300 35 0 18027 0.261 + 6902 FPVELIDFAL 10 39 582.3211180165134 1162.6276830998268 2 582.3212280273438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FPVELIDFAL_ ENSG00000215251|ENST00000380266|FASTKD5 9.38312468134398 0.42334543440173333 1 A{I|L} 2 8 20.969 0 0 1.8036 0 0 960.4962550805545 0 960.4962550805545 0 20.969100130080562 0 0 0 0 0 0 0 + A{I|L} 1.8036 + + 5 NaN NaN 107222 NaN 22101 4991 27092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27096 105.21 NaN 106620 35 0 9098.7 0.411 + 28342 TPARDYNNSY 10 59 600.7686346427084 1199.5227163522168 2 600.7682495117188 MULTI HCD FTMS 0 0 0 27095 30054.884765625 0.38398700361745924 -8 0.0759735107421875 1 Unmodified _TPARDYNNSY_ ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF;nc|ENSG00000102226|P51784|USP11 4.897010918128616 0.4493830473644964 1 N[HM]{I|L}Y 5 9 25.722 0 0 2.1443 0 0 0 538.2060640924436 538.2060640924436 6.297072068451289 0 0 0 0 1.25 0 0 0 N[HM]{I|L}Y 2.1443 - 85 + NaN NaN 116927.1 NaN 22102 4992 27095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27098 105.22 NaN 47761 35 0 4445.6 0.326 + -1 DDSGSCLIGER 11 37 604.7647112348111 NaN 0 604.7637329101562 PEAK HCD FTMS 0 0 0 27097 31878.04296875 0.7346157034862739 -3 0.02654266357421875 1 Carbamidomethyl (C) _DDSGSC(Carbamidomethyl (C))LIGER_ REV__ENSG00000150627|ENST00000508596|WDR17;REV__nc|ENSG00000150627|Q8IZU2|WDR17 4.189502756095605 0.3302357306631285 1 {I|L} 1 -1 8.2268 0 0 0.6813 0 0 360.16759278036585 731.2390841119749 1091.4066768923408 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.6813 + + 7 + NaN NaN 91748.5 NaN 22103 4993 27097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27099 105.23 NaN 30044 35 0 4389.8 0.261 + -1 YNIKHFFMK 9 28 622.3173828125 NaN 0 622.3173828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 1 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.1029263654312 849.4058931940061 1126.5088195594374 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 101720.1 NaN 22104 4993 27097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27101 105.23 NaN 136520 35 0 14665 0.327 + -1 QMVCAELDNL 10 50 596.7691075252957 1191.5236621173913 2 597.2705078125 MULTI HCD FTMS 0 0 0 27100 33908.73046875 0.6624537031772787 -2 0.01692962646484375 1 Carbamidomethyl (C) _QMVC(Carbamidomethyl (C))AELDNL_ REV__ENSG00000120235|ENST00000380210|IFNA6;REV__ENSG00000197919|ENST00000276927|IFNA1;REV__ENSG00000233816|ENST00000610660|IFNA13 9.5439744041441 0.42184090036563754 1 NAY{I|L} 4 -1 25.662 0 0 2.1537 0 0 370.13274522461626 357.1411532037719 727.2738984283882 0 0 0 0 0 1 0 0 0 NAY{I|L} 2.1537 - 28 + NaN NaN 107638.6 NaN 22105 4994 27100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27102 105.24 NaN 105300 35 0 14841 0.261 + 13773 KYPSPFFVF 9 34 566.2974687974809 1130.5803846617616 2 566.2984008789062 MULTI HCD FTMS 0 0 0 27100 16483.345703125 0.3291195471157032 -4 0.0359649658203125 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 10.823927491677226 0.26684000660059787 1 V{M(Oxidation (M))|F} 2 7 27.519 0 0 2.434 0 0 866.4305702814244 0 866.4305702814244 0 17.0609971201948 0 0 0 0.805462187404089 0 0 0 + V{M(Oxidation (M))|F} 2.434 + + 7 NaN NaN 94120.7 NaN 22106 4994 27100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27104 105.24 NaN 195960 35 0 47689 0.327 + -1 AYMHAELNLD 10 52 596.7691075252957 1191.5236621173913 2 596.7669067382812 MULTI HCD FTMS 0 0 0 27103 33660.24609375 0.5283366281986063 -7 0.07416534423828125 1 Oxidation (M) _AYM(Oxidation (M))HAELNLD_ REV__ENSG00000152061|ENST00000681986|RABGAP1L;REV__nc|ENSG00000152061|Q5R372-3|RABGAP1L;REV__nc|ENSG00000152061|Q5R372-4|RABGAP1L;REV__nc|ENSG00000152061|Q5R372-5|RABGAP1L;REV__nc|ENSG00000152061|Q5R372-6|RABGAP1L;REV__nc|ENSG00000152061|Q5R372|RABGAP1L 12.240655878213236 0.39661705172222156 1 {I|L}[DN]{I|L} 4 -1 24.693 0 0 2.0724 0 0 718.27303095663 0 718.27303095663 0 10.880456295278407 0 0 0 0.8494850021680094 0 0 0 {I|L}[DN]{I|L} 2.0724 - 35 NaN NaN 111924.5 NaN 22107 4995 27103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27105 105.25 NaN 72421 35 0 28822 0.263 + 17928 MILRRVKKLFN 11 33 473.2993562486211 1416.8762393460634 3 473.2992248535156 MULTI HCD FTMS 0 0 0 27103 37485.06640625 0.6771480371713262 -7 0.07416534423828125 2 Unmodified _MILRRVKKLFN_ REV__ENSG00000188649|ENST00000646931|CC2D2B 0.09484139111097674 0.41850472438158626 1 E 1 -1 1.9897 0 0 0.14043 0 0 962.6405958907884 322.18027673892817 1284.8208726297166 0 0 0 0 0 0 0 0 0 E 0.14043 - 2 + NaN NaN 95011.4 NaN 22108 4995 27103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27106 105.25 NaN 94156 35 0 9017.5 0.261 -1 FLTIYPNCSS 10 50 601.2824753815265 NaN 0 601.2716674804688 PEAK HCD FTMS 0 0 0 27103 9183.3759765625 1 0 0 3 Carbamidomethyl (C) _FLTIYPNC(Carbamidomethyl (C))SS_ nc|ENSG00000152049|Q8WWG9|KCNE4 5.296884461304476 0.3356508900602619 1 DD{I|L} 3 -1 10.177 0 0 0.84772 0 0 131.1436174053179 723.2476900690061 854.3913074743241 0 0 0 0 0 0 0 0 0 DD{I|L} 0.84772 - 31 + NaN NaN 116063.9 NaN 22109 4995 27103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27108 105.25 NaN 25246 35 0 5359.7 0.327 + 23487 RLYWLYWQDWF 11 14 559.2720765847864 NaN 0 559.2723999023438 PEAK HCD FTMS 0 0 0 27107 10158.1337890625 0.4860806250734827 6 -0.0575714111328125 1 Unmodified _RLYWLYWQDWF_ REV__ENST00000488825.5_1_3:123813684-123881061:+|nuORF;REV__nc|ENSG00000160145|O60229-2|KALRN;REV__nc|ENSG00000160145|O60229|KALRN 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85041.1 NaN 22110 4996 27107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27109 105.26 NaN 19408 35 0 5052 0.261 + -1 YWMPIIWLF 9 17 642.828223555834 NaN 0 642.8289184570312 PEAK HCD FTMS 0 0 0 27107 8197.8212890625 0.3726058787665087 7 -0.06697845458984375 2 Oxidation (M) _YWM(Oxidation (M))PIIWLF_ REV__nc|ENSG00000138347|Q86TC9-2|MYPN 2.302733041254933 0.2840881193086663 1 {I|L} 1 -1 6.9897 0 0 0.54452 0 0 165.07873607475545 1002.4688204400999 1167.5475565148554 0 0 0 0 0 0 0 0 0 {I|L} 0.54452 + + 1 + NaN NaN 85274.7 NaN 22111 4996 27107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27112 105.27 NaN 460190 35 0 32226 0.327 + 346 AGWNAYIDNL 10 69 589.7775975403262 1177.5406421474522 2 589.7777099609375 MULTI HCD FTMS 0 0 0 27111 319621.8125 0.7810971087205153 -2 0.0165557861328125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 96.93554129104106 0.00047009049263694176 1 NAY{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 7 3 84.825 0 0 7.2036 0 0 356.14891198061895 0 356.14891198061895 0 60.785050450693916 0 0 0 2.610924374808178 0 1.3252574989159953 1.3737125054200234 + NAY{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 7.2036 + + 864 + NaN NaN 148792.6 NaN 22112 4998 27111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27113 105.27 NaN 66786 35 0 7837.6 0.261 -1 CLISMDLIF 9 34 556.2781828059051 1110.54181267861 2 556.2772827148438 MULTI HCD FTMS 0 0 0 27111 15935.53125 0.6197286271079548 1 -0.0091400146484375 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LISMDLIF_ ENST00000505065.1_1_5:130727572-130727803:+|nuORF 7.910154910731844 0.2910521888787154 1 {I|L}{M(Oxidation (M))|F} 2 -1 17.435 0 0 1.57 0 0 832.378648471382 0 832.378648471382 0 10.445312593723983 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.57 + + 6 + NaN NaN 99005.4 NaN 22113 4998 27111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27115 105.28 NaN 175770 35 0 27479 0.327 + 9723 HWMFVMDNI 9 62 596.7691075252957 1191.5236621173913 2 596.7667846679688 MULTI HCD FTMS 0 0 0 27114 55483.87109375 0.8708837508624457 -3 0.02569580078125 1 Unmodified _HWMFVMDNI_ MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant 20.453626601364224 0.18364154288633264 1 {I|L}DN{I|L} 4 6 31.682 0 0 2.659 0 0 718.2706975800195 0 718.2706975800195 0 21.197887582883936 0 0 0 1.1677353201839438 0 0 0.3807196863200844 {I|L}DN{I|L} 2.659 - 24 NaN NaN 128099.8 NaN 22114 4999 27114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27116 105.28 NaN 45869 35 0 5609.6 0.261 + 13547 KYPENFFLL 9 22 585.8134932302556 NaN 0 585.8140869140625 PEAK HCD FTMS 0 0 0 27114 34122.75390625 0.5565390346151712 31 -0.2938995361328125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 4.897010918128616 0.2715166107592903 1 {I|L}{M(Oxidation (M))|F} 2 8 10.969 0 0 0.93784 0 0 131.09566376033177 775.3414400690061 906.437103829338 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93784 - 4 + NaN NaN 92801.6 NaN 22115 4999 27114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27117 105.29 NaN 65326 35 0 5277.5 0.261 + 8436 GYTPRGNSIF 10 46 556.2781828059051 1110.54181267861 2 556.2789306640625 MULTI HCD FTMS 0 0 0 27114 23982.158203125 0.9326598370109834 2 -0.02240753173828125 3 Unmodified _GYTPRGNSIF_ ENSG00000162551|ENST00000374840|ALPL;ENST00000374829.2_1_1:21901133-21904138:+|nuORF;nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL 2.9952420565917617 0.4594494122822477 1 {I|L} 1 9 5.4846 0 0 0.49386 0 0 165.99980250799132 828.4357393854124 994.4355418934038 0 0 0 0 0 0 0 0 0 + {I|L} 0.49386 + + 5 + NaN NaN 106776.3 NaN 22116 4999 27114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27119 105.29 NaN 182800 35 0 25078 0.327 + 31334 VWVPFIYSF 9 50 579.3051105446565 1156.5956681561129 2 579.3049926757812 MULTI HCD FTMS 0 0 0 27118 46759.26953125 0.6820474300490136 14 -0.1293487548828125 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 42.09456458481378 0.05572955244001856 1 YS{M(Oxidation (M))|F} 3 6 38.5 0 0 3.3287 0 0 741.4212330856933 0 741.4212330856933 0 29.06295947543775 0 0 0 1.2302046884880937 0 0 0 + YS{M(Oxidation (M))|F} 3.3287 + + 28 NaN NaN 103309.5 NaN 22117 5000 27118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27120 105.3 NaN 56626 35 0 7063.4 0.261 -1 0 32 496.27543024517917 495.2681537785792 1 496.2753601074219 MULTI HCD FTMS 0 0 0 27118 37236.91015625 0.10558298128849607 22 -0.207550048828125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91348.3 NaN 22118 5000 27118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27122 105.3 NaN 101860 35 0 20471 0.327 + 27003 SYLPWFEVF 9 40 594.2924521758952 1186.5703514185902 2 594.2919311523438 MULTI HCD FTMS 0 0 0 27121 22544.3125 0.0859508326800407 23 -0.214141845703125 1 Unmodified _SYLPWFEVF_ DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion;DENND1A-NDUFA8|1|fusion;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A 34.40172386719151 0.0910440009062557 1 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[WP]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 0 + 44.548 0 0 3.7543 3.7543 89.065 0 0 0 7.147642715192504 41.44885804309786 7.147642715192504 44.547801834539825 0 1.1694451763165201 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[WP]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 3.7543 + + 40 NaN NaN 104755.6 NaN 22119 5001 27121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27123 105.31 NaN 60188 35 0 7410.8 0.261 -1 MYIIPVVLF 9 37 555.8171775688988 NaN 0 555.8170776367188 PEAK HCD FTMS 0 0 0 27121 3307.550048828125 0.15496779788897272 1 -0.00946807861328125 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 9.347437153973935 0.2499504662953367 1 {I|L} 1 -1 11.99 0 0 1.0805 0 0 165.079244148668 828.4340804897267 993.5133246383948 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0805 + + 1 + NaN NaN 99357 NaN 22120 5001 27121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27125 105.31 NaN 295310 35 0 27799 0.327 + 21270 PRPGRPRRPRR 11 79 467.62374601666363 1399.849408650191 3 467.6236877441406 MULTI HCD FTMS 0 0 0 27124 153485.390625 0.6022978279590528 2 -0.01641082763671875 1 Unmodified _PRPGRPRRPRR_ ENST00000296350.9_1_3:196729451-196730141:-|nuORF 1.3296431237094175 0.4130893034510334 1 A 1 11 5.8412 0 0 0.41727 0 0 765.4708696313345 560.3301485650999 1325.8010181964344 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.41727 - 13 + NaN NaN 132705.7 NaN 22121 5002 27124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27126 105.32 NaN 73404 35 0 8021.9 0.261 -1 CRMRARHW 8 32 566.273655250245 1130.53275756729 2 567.2766723632812 MULTI HCD FTMS 0 0 0 27124 27054.91796875 0.5926019504532177 20 -0.18842315673828125 2 Oxidation (M) _CRM(Oxidation (M))RARHW_ nc|ENSG00000174844|Q6ZR08|DNAH12 2.577480529830294 0.5381683276125971 1 SW 2 -1 20.969 0 0 1.8548 0 0 839.4112803717807 0 839.4112803717807 0 13.521825181113625 0 0 0 0 0 0 0 SW 1.8548 - 13 + NaN NaN 98408 NaN 22122 5002 27124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27129 105.33 NaN 96495 35 0 10201 0.327 -1 REEEICIF 8 50 548.2616982334905 NaN 0 548.2809448242188 PEAK HCD FTMS 0 0 0 27128 4751.5771484375 0.33474044142727666 -1 0.0070037841796875 1 Carbamidomethyl (C) _REEEIC(Carbamidomethyl (C))IF_ CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant;ENSG00000135205|ENST00000285871|CCDC146;ENST00000474733.5_1_7:76911883-76916812:+|nuORF;nc|ENSG00000135205|Q8IYE0-2|CCDC146 6.354104778181461 0.38822285293237185 1 {I|L}WD 3 -1 14.693 0 0 1.3424 0 0 165.03742982135083 512.2551973932249 677.2926272145758 0 0 0 0 0 0 0 0 0 {I|L}WD 1.3424 - 33 + NaN NaN 101143.8 NaN 22123 5004 27128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27130 105.33 NaN 90025 35 0 13907 0.261 + 6903 FPVELIDFAL 10 39 582.3211180165134 1162.6276830998268 2 582.8226928710938 MULTI HCD FTMS 0 0 0 27128 4110.67333984375 0.08459190704710176 1 -0.012481689453125 2 Unmodified _FPVELIDFAL_ ENSG00000215251|ENST00000380266|FASTKD5 9.38312468134398 0.42334543440173333 1 A{I|L} 2 8 20.969 0 0 1.8036 0 0 960.4970842798913 0 960.4970842798913 0 8.979400086720375 0 0 0 0 0 0 0 + A{I|L} 1.8036 + + 4 NaN NaN 103499.6 NaN 22124 5004 27128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27131 105.34 NaN 116860 35 0 23054 0.262 + 6537 FPLAPLFAL 9 44 494.79705066582585 987.5795483984517 2 494.7971496582031 MULTI HCD FTMS 0 0 0 27128 21593.390625 0.4048173183848194 -2 0.01641082763671875 3 Unmodified _FPLAPLFAL_ ENSG00000131620|ENST00000355303|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF;nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1 9.347437153973935 0.2795965555214564 1 A{I|L} 2 7 25.969 0 0 2.6296 0 0 785.4473864376068 0 785.4473864376068 0 25.969100130080562 0 0 0 0.5 0 0 0 + A{I|L} 2.6296 + + 5 NaN NaN 114499.7 NaN 22125 5004 27128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27133 105.34 NaN 58203 35 0 12138 0.327 + 5004 FCMLRVKE 8 29 513.2675828312211 NaN 0 513.267578125 PEAK HCD FTMS 0 0 0 27132 8628.193359375 0.46806366997110754 8 -0.07189178466796875 1 Unmodified _FCMLRVKE_ RASD2|p.R220L|1|0.27|ENSG00000100302|chr22:35551890-35551890|G/T|missense_variant 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93117.7 NaN 22126 5005 27132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27134 105.34 NaN 47588 35 0 8936 0.261 + 23994 RVVVKILKP 9 29 526.3721923828125 NaN 0 526.3721923828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RVVVKILKP_ ENSG00000070770|ENST00000262506|CSNK2A2 0 0.29524684227089293 1 K 1 8 2.7642 0 0 0.26308 0 0 414.58014111152494 505.02131067447505 919.601451786 0 0 0 0 0 0 0 0 0 + K 0.26308 + + 1 + NaN NaN 85337.9 NaN 22127 5005 27132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27136 105.35 NaN 35035 35 0 5771.3 0.327 -1 HWMFVMDNI 9 22 604.7647781639823 NaN 0 604.7639770507812 PEAK HCD FTMS 0 0 0 27135 19356.66015625 0.5870897955145783 1 -0.00942230224609375 1 Oxidation (M) _HWM(Oxidation (M))FVMDNI_ MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant 3.5964929083625545 0.27781873954207675 1 {I|L} 1 -1 10.485 0 0 0.86827 0 0 734.2648946074584 357.1410006158813 1091.4058952233397 0 0 0 0 0 0.5 0 0 0 {I|L} 0.86827 + + 5 + NaN NaN 93594.6 NaN 22128 5006 27135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27137 105.35 NaN 57210 35 0 8380.2 0.261 + 26541 SVLRSDSSPAC 11 35 561.2678425051544 NaN 0 560.796142578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SVLRSDSSPAC_ ENSG00000278803|ENST00000458091|PWWP4 0.9622753412299311 0.33939044544643376 1 G 1 11 1.5938 0 0 0.14224 0 0 913.5744443103102 146.90407739810783 1060.4785217084182 0 0 0 0 0 0 0 0 0 G 0.14224 - 1 + NaN NaN 98419.1 NaN 22129 5006 27135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27139 105.36 NaN 49379 35 0 2509.2 0.411 -1 NDMEIKVEES 10 36 605.2692057772538 1208.5238586213075 2 605.2681884765625 MULTI HCD FTMS 0 0 0 27138 13318.578125 0.5401591300562845 2 -0.01700592041015625 1 Oxidation (M) _NDM(Oxidation (M))EIKVEES_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant 4.897010918128616 0.4493830473644964 1 {I|L}[QT]N 4 -1 11.682 0 0 0.96667 0 0 734.266405174025 0 734.266405174025 0 6.197887582883936 0 0 0 0 0 0 0 {I|L}[QT]N 0.96667 - 7 NaN NaN 99685.8 NaN 22130 5007 27138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27141 105.37 NaN 65738 35 0 25574 0.327 + 12309 KLVLFRNRKLM 11 30 473.2993562486211 1416.8762393460634 3 473.2992248535156 MULTI HCD FTMS 0 0 0 27140 10574.326171875 0.19101964857398965 6 -0.054779052734375 1 Unmodified _KLVLFRNRKLM_ ENST00000370673.7_2_1:84791369-84815338:+|nuORF 0.08335046087909445 0.4185551196980541 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100588.3 NaN 22131 5008 27140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27142 105.37 NaN 34515 35 0 5193.1 0.261 + -1 NYILLMGLCF 10 29 622.3159790039062 NaN 0 622.3159790039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _NYILLMGLC(Carbamidomethyl (C))F_ REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|7|1|sense;REV__SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|14|3|sense;REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense 3.944395688203298 0.33680843299986807 1 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.1026898419937 849.4058262976599 1126.5085161396537 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 2 + NaN NaN 101515.2 NaN 22132 5008 27140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27144 105.38 NaN 96758 35 0 7079.2 0.411 + 34795 YQVLHNLVF 9 44 566.8112306233035 NaN 0 566.7992553710938 PEAK HCD FTMS 0 0 0 27143 4440.62890625 0.33816072615252085 -1 0.00948333740234375 1 Unmodified _YQVLHNLVF_ REV__ENST00000355899.7_1_X:114884577-114884703:+|nuORF 4.75600775471527 0.27219989241163056 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.48467 0 0 204.16393072375598 764.3977755182249 968.5617062419808 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.48467 - 15 + NaN NaN 132192.5 NaN 22133 5009 27143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27146 105.38 NaN 82470 35 0 7053.6 0.327 + 27403 SYTRYGLSW 9 35 566.774840141763 NaN 0 566.7750244140625 PEAK HCD FTMS 0 0 0 27145 13435.173828125 0.377694144793035 -11 0.10430908203125 1 Unmodified _SYTRYGLSW_ REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 9.38312468134398 0.24977752951804 1 S 1 -1 16.237 0 0 1.435 0 0 840.413528084504 201.06691919498283 1041.480447279487 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.435 + + 5 + NaN NaN 105309.2 NaN 22134 5010 27145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27147 105.39 NaN 49026 35 0 9535.9 0.261 -1 MGRPEEKCW 9 26 604.7647781639823 NaN 0 604.7659301757812 PEAK HCD FTMS 0 0 0 27145 11461.0234375 0.34761419852365777 5 -0.04534912109375 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))GRPEEKC(Carbamidomethyl (C))W_ ENST00000272198.10_1_1:203020413-203020764:+|nuORF 3.2813086475875832 0.27934607848455584 1 {I|L} 1 -1 8.9794 0 0 0.74363 0 0 734.2679463652709 357.14121423892817 1091.409160604199 0 0 0 0 0 0.5 0 0 0 {I|L} 0.74363 - 2 + NaN NaN 95747.5 NaN 22135 5010 27145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27149 105.39 NaN 272120 35 0 20359 0.327 + 347 AGWNAYIDNL 10 68 589.7775975403262 1177.5406421474522 2 589.7776489257812 MULTI HCD FTMS 0 0 0 27148 163165.03125 0.39874542089854254 11 -0.10650634765625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 85.76441949171179 0.0013275063545469994 1 NAY{I|L}DN{I|L} 7 3 76.692 0 0 6.5129 0 0 356.1483207869407 0 356.1483207869407 0 54.75370578742732 0 0 0 2.853917193908117 0 0.9559771852360797 0.9876954943324545 + NAY{I|L}DN{I|L} 6.5129 + + 303 + NaN NaN 130499.7 NaN 22136 5011 27148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27150 105.4 NaN 43007 35 0 9717.9 0.261 + 3992 ERHTHWGV 8 32 511.2518181798887 NaN 0 511.2518615722656 PEAK HCD FTMS 0 0 0 27148 17894.044921875 0.5126589120748724 41 -0.38343048095703125 2 Unmodified _ERHTHWGV_ ENST00000415259.5_2_3:51705304-51705712:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90822.9 NaN 22137 5011 27148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27152 105.4 NaN 304690 35 0 44440 0.327 + 27834 TCRVCVCVFY 10 57 596.7691075252957 1191.5236621173913 2 596.7665405273438 MULTI HCD FTMS 0 0 0 27151 13560.1201171875 0.21284182298397378 10 -0.09706878662109375 1 Unmodified _TCRVCVCVFY_ ENST00000609618.2_1_16:29831081-29831285:+|nuORF 10.823927491677226 0.4098686510432541 1 D{[QV]|[N{I|L}]|[RA]|[KV]} 3 9 14.85 0 0 1.2463 0 0 831.3589415136788 0 831.3589415136788 0 3.525436162722624 0 0 0 0.5 0 0.28872548999643577 0 D{[QV]|[N{I|L}]|[RA]|[KV]} 1.2463 - 73 + NaN NaN 135269.6 NaN 22138 5012 27151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27153 105.41 NaN 35596 35 0 4424.8 0.261 + -1 DSPVPSPCRGE 11 29 600.7686346427084 1199.5227163522168 2 600.7700805664062 MULTI HCD FTMS 0 0 0 27151 5886.037109375 0.07520114518606029 12 -0.11331939697265625 2 Carbamidomethyl (C) _DSPVPSPC(Carbamidomethyl (C))RGE_ REV__ENST00000378560.8_2_5:133480506-133482209:+|nuORF;REV__ENST00000522653.5_1_5:133481849-133482209:+|nuORF;REV__ENST00000524342.5_1_5:133478937-133482209:+|nuORF;REV__nc|ENSG00000081059|P36402-11|TCF7;REV__nc|ENSG00000081059|P36402-12|TCF7;REV__nc|ENSG00000081059|P36402-3|TCF7;REV__nc|ENSG00000081059|P36402-4|TCF7 2.735195868890462 0.4069250265843076 1 {I|L} 1 -1 5.4846 0 0 0.45723 0 0 704.2885987758481 379.12250696353755 1083.4111057393857 0 0 0 0 0 0 0 0 0 {I|L} 0.45723 - 3 + NaN NaN 88087.7 NaN 22139 5012 27151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27155 105.41 NaN 117900 35 0 15680 0.327 + 31335 VWVPFIYSF 9 42 579.3049489222448 NaN 0 579.3051147460938 PEAK HCD FTMS 0 0 0 27154 42902.04296875 1 0 0 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 30.224811164608877 0.11876709777893199 1 Y{I|L} 2 8 15.969 0 0 1.3807 0 0 252.11275321382692 625.3156832330686 877.4284364468956 0 0 0 0 0 0.8494850021680094 0 0 0 Y{I|L} 1.3807 - 8 + NaN NaN 109334.4 NaN 22140 5013 27154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27156 105.42 NaN 49403 35 0 5635.6 0.261 + 11309 IYLTFPVAMF 10 32 601.3201993706477 1200.6258458080954 2 601.3204345703125 MULTI HCD FTMS 0 0 0 27154 30475.21875 0.5195383882345538 26 -0.23687744140625 2 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 10.073929032068715 0.4168838835836452 1 {M(Oxidation (M))|F} 1 9 15.797 0 0 1.3157 0 0 490.27930147391413 560.2544764301588 1050.5337779040728 0 0 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F} 1.3157 + + 6 + NaN NaN 88288.2 NaN 22141 5013 27154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27158 105.42 NaN 46685 35 0 5359.9 0.411 -1 MYIIPVVLF 9 40 555.8167063065412 1109.6188596798822 2 555.81494140625 MULTI HCD FTMS 0 0 0 27157 17413.24609375 0.8380200331520327 -3 0.0283050537109375 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18003371494288972 1 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7231 0 0 831.4562823513244 0 831.4562823513244 0 23.226825097560422 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.7231 + + 8 NaN NaN 103115.4 NaN 22142 5014 27157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27160 105.43 NaN 43849 35 0 4519 0.411 -1 HWCGCSGQM 9 47 533.1906796629206 NaN 0 533.1908569335938 PEAK HCD FTMS 0 0 0 27159 12301.8349609375 0.7346556663600615 -19 0.17535400390625 1 Carbamidomethyl (C) _HWCGC(Carbamidomethyl (C))SGQM_ ENST00000430436.5_2_20:20373432-20373606:-|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93304.7 NaN 22143 5015 27159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27162 105.44 NaN 137540 35 0 10549 0.411 + 21271 PRPGRPRRPRR 11 87 467.62374601666363 1399.849408650191 3 467.6236877441406 MULTI HCD FTMS 0 0 0 27161 114894.203125 0.4508606891215235 16 -0.1515350341796875 1 Unmodified _PRPGRPRRPRR_ ENST00000296350.9_1_3:196729451-196730141:-|nuORF 1.3296431237094175 0.4130893034510334 1 A 1 11 5.2165 0 0 0.37265 0 0 765.4700884371035 560.3278902643186 1325.7979787014222 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.37265 - 19 + NaN NaN 140904.3 NaN 22144 5016 27161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27164 105.44 NaN 82338 35 0 18351 0.327 + 13548 KYPENFFLL 9 28 585.8134964733979 NaN 0 585.8134765625 PEAK HCD FTMS 0 0 0 27163 30375.30859375 0.47813089856337143 -6 0.05096435546875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 7.608950283845883 0.2583749310551142 1 {I|L}{M(Oxidation (M))|F} 2 8 10.969 0 0 0.93784 0 0 131.09538411013529 775.3405855768186 906.435969686954 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93784 - 4 + NaN NaN 101696.2 NaN 22145 5017 27163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27165 105.45 NaN 94828 35 0 8767.5 0.261 + 13774 KYPSPFFVF 9 43 566.2974687974809 1130.5803846617616 2 566.2973022460938 MULTI HCD FTMS 0 0 0 27163 22123.224609375 0.4417298402469393 18 -0.167572021484375 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 16.149105407346934 0.22083165093524068 1 {[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10 5 + 35.903 0 0 3.1756 3.1756 80.788 0 0 0 3.52182518111362 7.269987279362624 3.52182518111362 3.52182518111362 0 0.9247425010840047 0 0 0 {[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.1756;2.8641 -;- 52 NaN NaN 97434.9 NaN 22146 5017 27163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27166 105.45 NaN 40583 35 0 5626.4 0.261 + 20984 PLLLAIELDF 10 24 572.3367900382937 1142.6590271433872 2 572.3367309570312 MULTI HCD FTMS 0 0 0 27163 4302.798828125 0.03097724473529715 -19 0.17389678955078125 3 Unmodified _PLLLAIELDF_ REV__ENSG00000198840|ENST00000361227|MT-ND3 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87925.3 NaN 22147 5017 27163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27167 105.46 NaN 46079 35 0 7390.2 0.261 -1 MYIIPVVLF 9 26 555.8167063065412 1109.6188596798822 2 555.817138671875 MULTI HCD FTMS 0 0 0 27163 5559.8681640625 0.2675710707862164 -1 0.00760650634765625 4 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 9.347437153973935 0.2795965555214564 1 {I|L}{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.2725 0 0 831.455370017775 0 831.455370017775 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2725 + + 2 NaN NaN 84050 NaN 22148 5017 27163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27169 105.46 NaN 41955 35 0 5002.4 0.327 -1 CLLCRRQF 8 29 548.2808522714578 NaN 0 548.2804565429688 PEAK HCD FTMS 0 0 0 27168 13020.8310546875 0.41538595883889967 1 -0.00962066650390625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLCRRQF_ ENSG00000003756|ENST00000347869|RBM5;ENSG00000004534|ENST00000266022|RBM6;ENSG00000182872|ENST00000377604|RBM10;ENST00000421682.1_1_3:50103854-50112609:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000464988.1_1_3:50152821-50154632:+|nuORF;ENST00000475590.5_1_3:50151466-50154632:+|nuORF;ENST00000479275.1_1_3:50152821-50153476:+|nuORF;ENST00000492430.1_1_3:50151648-50153476:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;nc|ENSG00000182872|P98175-2|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-5|RBM10;RBM6|p.N966I|1|0.44|ENSG00000004534|chr3:50066456-50066456|A/T|missense_variant 5.760428011301431 0.38822285293237185 1 D 1 -1 7.7642 0 0 0.70935 0 0 464.24192807631545 512.2563570611936 976.4982851375091 0 0 0 0 0 0.5 0 0 0 D 0.70935 - 6 + NaN NaN 89419.6 NaN 22149 5018 27168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27170 105.46 NaN 22746 35 0 4021.3 0.261 + 20774 PGPRWRRRQ 9 20 604.8500203675011 NaN 0 604.8497924804688 PEAK HCD FTMS 0 0 0 27168 10408.7275390625 0.6665757556010368 2 -0.0223846435546875 2 Unmodified _PGPRWRRRQ_ ENST00000233535.8_1_2:27481772-27486087:-|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88700.3 NaN 22150 5018 27168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27172 105.47 NaN 89591 35 0 12246 0.327 + 31336 VWVPFIYSF 9 31 579.3049489222448 NaN 0 579.2931518554688 PEAK HCD FTMS 0 0 0 27171 23309.646484375 0.543322528984315 5 -0.04618072509765625 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 18.13498045792455 0.19991664011725976 1 Y 1 8 11.99 0 0 1.0366 0 0 252.11116629976442 738.3977865181025 990.5089528178669 0 0 0 0 0 0.5 0 0 0 + Y 1.0366 + + 8 + NaN NaN 87300.8 NaN 22151 5019 27171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27173 105.47 NaN 73179 35 0 7368.4 0.261 + 6538 FPLAPLFAL 9 34 494.79705066582585 987.5795483984517 2 494.7965393066406 MULTI HCD FTMS 0 0 0 27171 21982.380859375 0.4121098268329951 12 -0.11078643798828125 2 Unmodified _FPLAPLFAL_ ENSG00000131620|ENST00000355303|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF;nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1 5.230669730166228 0.3113646817964458 1 A{I|L} 2 7 20.969 0 0 2.1233 0 0 785.44438368965 0 785.44438368965 0 20.969100130080562 0 0 0 0 0 0 0 + A{I|L} 2.1233 + + 3 NaN NaN 99766.1 NaN 22152 5019 27171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27174 105.48 NaN 50560 35 0 5006.7 0.261 + 1815 CRLSPLEHEL 10 30 598.8060302734375 NaN 0 598.8060302734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _CRLSPLEHEL_ ENST00000379440.8_2_20:4681148-4681205:+|nuORF 4.5288652416199255 0.33630820806755984 1 {I|L} 1 9 6.9897 0 0 0.58462 0 0 131.07420595527498 948.4096163385374 1079.4838222938124 0 0 0 0 0 0 0 0 0 + {I|L} 0.58462 + + 2 + NaN NaN 94298.2 NaN 22153 5019 27171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27176 105.48 NaN 132150 35 0 32879 0.327 + 15208 LNKNFSLDQV 10 51 589.3123108844712 1176.6100688357424 2 589.312255859375 MULTI HCD FTMS 0 0 0 27175 16438.90234375 0.2737915667550406 4 -0.033416748046875 1 Unmodified _LNKNFSLDQV_ REV__ENSG00000205517|ENST00000380456|RGL3;REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF;REV__ENST00000563726.5_1_19:11522073-11527633:-|nuORF;REV__nc|ENSG00000205517|Q3MIN7-2|RGL3 14.405379775768559 0.37636895476610294 1 D{I|L}Y[Y{M(Oxidation (M))|F}]V{I|L} 7 -1 35.291 0 0 2.9994 0 0 245.13722426582189 0 245.13722426582189 0 23.124241387177946 0 0 0 0.3807196863200844 0 0.3252574989159953 0 D{I|L}Y[Y{M(Oxidation (M))|F}]V{I|L} 2.9994 - 83 NaN NaN 106731.2 NaN 22154 5020 27175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27177 105.49 NaN 46026 35 0 4374.7 0.261 + 10358 ILYILLVGYP 10 24 582.3566142417072 NaN 0 582.321533203125 PEAK HCD FTMS 0 0 0 27175 10760.125 0.8698004751613869 7 -0.06653594970703125 2 Unmodified _ILYILLVGYP_ ENSG00000058404|ENST00000395749|CAMK2B;ENSG00000070808|ENST00000671881|CAMK2A;ENSG00000145349|ENST00000511664|CAMK2D;ENSG00000148660|ENST00000423381|CAMK2G;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;ENST00000523845.5_1_7:44260423-44302632:-|nuORF;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G 1.844237919475145 0.33860587697544825 1 {I|L} 1 9 6.9897 0 0 0.60116 0 0 615.3966868800957 431.19309412174067 1046.5897810018364 0 0 0 0 0 0 0 0 0 + {I|L} 0.60116 + + 4 + NaN NaN 93366 NaN 22155 5020 27175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27179 105.49 NaN 111240 35 0 26300 0.411 -1 0 52 435.0559137569947 3038.340461032763 7 435.1987609863281 MULTI HCD FTMS 0 0 0 27178 19575.65234375 0.47902404016051436 58 -0.5647659301757812 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 121744.3 NaN 22156 5021 27178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27182 105.51 NaN 178360 35 0 65749 0.327 + -1 VAAAGCTC 8 33 405.1674241749077 808.3202954166154 2 405.167724609375 MULTI HCD FTMS 0 0 0 27181 185024.234375 0.08308019876691457 -17 0.1569671630859375 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 13.979 0 0 1.7294 0 0 155.09346705503702 537.1194230704145 692.2128901254516 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 5 + NaN NaN 106457.4 NaN 22157 5023 27181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27183 105.51 NaN 41831 35 0 7787.7 0.261 + -1 WLLCYPVC 8 22 527.2467825896136 NaN 0 527.2469482421875 PEAK HCD FTMS 0 0 0 27181 11517.30078125 0.7816453533829244 -1 0.00704193115234375 2 Carbamidomethyl (C) _WLLC(Carbamidomethyl (C))YPVC_ REV__ENST00000328945.6_1_16:82033487-82033676:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107402.1 NaN 22158 5023 27181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27185 105.52 NaN 112890 35 0 15659 0.327 + 31337 VWVPFIYSF 9 35 579.3040534037389 NaN 0 579.303466796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 23.1484247019978 0.16626532474190622 1 Y 1 8 15.242 0 0 1.3179 0 0 252.10931422759637 738.3982092891129 990.5075235167092 0 0 0 0 0 0.8252574989159953 0 0 0 + Y 1.3179 + + 4 + NaN NaN 103565.8 NaN 22159 5024 27184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27186 105.52 NaN 37931 35 0 3506.9 0.261 + 5339 FFRPRLKIS 9 27 582.3555886413124 NaN 0 582.2901000976562 PEAK HCD FTMS 0 0 0 27184 12172.0888671875 1 0 0 2 Unmodified _FFRPRLKIS_ REV__ENST00000508686.1_3_5:72861812-72861932:+|nuORF 0.5247636613948944 0.2927039108006614 1 {I|L} 1 -1 6.9897 0 0 0.60116 0 0 434.34226751524335 612.2434176080686 1046.585685123312 0 0 0 0 0 0 0 0 0 {I|L} 0.60116 + + 3 + NaN NaN 94814.1 NaN 22160 5024 27184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27188 105.53 NaN 91942 35 0 16324 0.411 -1 AGWNAYIDNL 10 57 589.7775975403262 1177.5406421474522 2 589.7774658203125 MULTI HCD FTMS 0 0 0 27187 28793.751953125 0.07036665058584395 25 -0.2255706787109375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 34.221707139014875 0.19555013683537745 1 SRNAY{I|L} 6 -1 43.581 0 0 3.7011 0 0 113.03888541092722 357.1420992486938 470.180984659621 0 0 0 0 0 2.110924374808178 0 0 0.4247425010840047 SRNAY{I|L} 3.7011 - 192 + NaN NaN 129200.1 NaN 22161 5025 27187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27190 105.53 NaN 75076 35 0 8300.1 0.327 + 22548 QSFDVFIDIL 10 33 598.8139380705912 1195.6133232079824 2 598.8141479492188 MULTI HCD FTMS 0 0 0 27189 26345.341796875 0.08581342778890276 -10 0.09641265869140625 1 Unmodified _QSFDVFIDIL_ REV__ENSG00000156502|ENST00000359655|SUPV3L1 23.789781309258295 0.28859042913526417 1 {I|L}D{I|L}{I|L} 4 -1 40.745 0 0 3.4079 0 0 723.3234120099625 0 723.3234120099625 0 36.76599703664159 0 0 0 0.8807196863200843 0 0 0 {I|L}D{I|L}{I|L} 3.4079 + + 19 NaN NaN 96365.4 NaN 22162 5026 27189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27191 105.54 NaN 104310 35 0 7619.5 0.261 + -1 GFSALLCLHD 10 41 566.774840141763 NaN 0 566.7744140625 PEAK HCD FTMS 0 0 0 27189 17805.47265625 0.5005534616500493 3 -0.03330230712890625 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 1 S 1 -1 13.539 0 0 1.1965 0 0 204.091308992371 837.3907777040017 1041.4820866963728 0 0 0 0 0 0.805462187404089 0 0 0 S 1.1965 + + 13 + NaN NaN 100163.9 NaN 22163 5026 27189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27192 105.54 NaN 42108 35 0 5843.7 0.261 + 30220 VILITSIIF 9 24 509.8307183870398 NaN 0 509.8307189941406 PEAK HCD FTMS 0 0 0 27189 8453.0869140625 0.40409935809722874 -3 0.02622222900390625 3 Unmodified _VILITSIIF_ tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1 4.3292370932331545 0.2742679634796037 1 N 1 9 3.9794 0 0 0.39104 0 0 720.1930397020109 180.3841951959594 900.5772348979702 0 0 0 0 0 0 0 0 0 N 0.39104 - 1 + NaN NaN 87200.1 NaN 22164 5026 27189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27193 105.54 NaN 26019 35 0 4823.5 0.261 -1 0 18 602.3748077859273 601.3675313193272 1 604.8496704101562 MULTI HCD FTMS 0 0 0 27189 9841.5859375 0.22928502582435398 -13 0.12090301513671875 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93369.7 NaN 22165 5026 27189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27195 105.55 NaN 45986 35 0 4337.2 0.412 -1 0 58 530.6535082651833 1588.9386953957496 3 530.6535034179688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98771.9 NaN 22166 5027 27194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27197 105.56 NaN 72678 35 0 10558 0.327 -1 LVVTETVYSM 10 33 579.2929764218245 NaN 0 579.3038330078125 PEAK HCD FTMS 0 0 0 27196 20872.90625 0.441727752015089 -17 0.1636199951171875 1 Oxidation (M) _LVVTETVYSM(Oxidation (M))_ tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103214.2 NaN 22167 5028 27196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27198 105.56 NaN 50335 35 0 7885 0.261 -1 MYIIPVVLF 9 28 555.8165893554688 NaN 0 555.8165893554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18155047927120396 1 {I|L} 1 -1 6.9897 0 0 0.63049 0 0 164.07408400936646 828.4341297337035 992.50821374307 0 0 0 0 0 0 0 0 0 {I|L} 0.63049 + + 3 + NaN NaN 85076.1 NaN 22168 5028 27196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27201 105.57 NaN 108810 35 0 18843 0.411 + 10661 IPVEVLVDLF 10 39 572.3367900382937 1142.6590271433872 2 572.3368530273438 MULTI HCD FTMS 0 0 0 27200 91065.921875 0.6556131164041894 -6 0.05735015869140625 1 Unmodified _IPVEVLVDLF_ ENSG00000185686|ENST00000405655|PRAME 56.17704186161178 0.05532499666593632 1 {I|L}VD{I|L}{M(Oxidation (M))|F} 5 5 63.46 0 0 5.5538 0 0 537.315412496706 0 537.315412496706 0 56.497723915880144 0 0 0 2.4247425010840047 0 0.9749073637206093 0 + {I|L}VD{I|L}{M(Oxidation (M))|F} 5.5538 + + 43 + NaN NaN 118197.2 NaN 22169 5030 27200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27203 105.58 NaN 77389 35 0 13444 0.411 -1 AGWNAYIDNL 10 54 589.7775975403262 1177.5406421474522 2 589.7777709960938 MULTI HCD FTMS 0 0 0 27202 21371.919921875 0.052229053856525966 31 -0.30306243896484375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 22.65808497894818 0.29917593477267174 1 YY{[QS]|[NT]}Y{I|L} 6 -1 30.608 0 0 2.5993 0 0 0 357.1466351496585 357.1466351496585 23.61818737241734 0 0 0 0 1.110924374808178 2 0 0 YY{[QS]|[NT]}Y{I|L} 2.5993 - 40 NaN NaN 102628.4 NaN 22170 5031 27202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27205 105.59 NaN 76370 35 0 7307.7 0.326 + 13775 KYPSPFFVF 9 39 566.2974687974809 1130.5803846617616 2 566.2971801757812 MULTI HCD FTMS 0 0 0 27204 26960.07421875 0.5383062138530856 33 -0.31946563720703125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 8.745405648335112 0.2847203663274469 1 V{M(Oxidation (M))|F} 2 7 25.217 0 0 2.2304 0 0 866.4331625224224 0 866.4331625224224 0 14.75895023531386 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.2304 + + 8 NaN NaN 94680.4 NaN 22171 5032 27204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27206 105.59 NaN 112220 35 0 14654 0.261 + 29974 VFIIVPAIF 9 39 509.82054057447107 1017.6265282157422 2 509.8201904296875 MULTI HCD FTMS 0 0 0 27204 5400.44970703125 0.021570035602572986 -13 0.118316650390625 2 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 36.466142684027034 0.08156716203802528 1 V[PA]{I|L}{M(Oxidation (M))|F} 5 4 39.521 0 0 3.8836 0 0 472.3050082956234 0 472.3050082956234 0 37.04628427264403 0 0 0 1.8807196863200843 0 0 0 + V[PA]{I|L}{M(Oxidation (M))|F} 3.8836 + + 24 + NaN NaN 113321.7 NaN 22172 5032 27204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27209 105.6 NaN 30276 35 0 5172.4 0.411 + -1 YNIKHFFMK 9 27 622.3167114257812 NaN 0 622.3167114257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.2427956001690155 1 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4287358380874 274.0826510065063 1126.5113868445937 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 2 + NaN NaN 97605.2 NaN 22173 5034 27208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27213 105.63 NaN 955180 35 0 470510 0.327 -1 MCSGQAGV 8 47 405.1674241749077 808.3202954166154 2 405.1679382324219 MULTI HCD FTMS 0 0 0 27212 1005861.0625 0.45165508878706784 -3 0.0209197998046875 1 Carbamidomethyl (C) _MC(Carbamidomethyl (C))SGQAGV_ ENST00000401738.3_1_2:42530513-42531625:+|nuORF 0.7936320650641473 0.540814922690045 1 {I|L}K 2 -1 21.013 0 0 2.5996 0 0 155.0939254311723 409.01227747135005 564.1062029025223 0 0 0 0 0 0.9247425010840047 0 0 0.8807196863200843 {I|L}K 2.5996 - 9 + NaN NaN 231346.1 NaN 22174 5037 27212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27214 105.63 NaN 482290 35 0 68832 0.261 + 26499 SVFSGFLLFPD 11 52 614.8161096954502 1227.6176664577004 2 614.815673828125 MULTI HCD FTMS 0 0 0 27212 33657.76171875 0.4491659837732001 -8 0.059112548828125 2 Unmodified _SVFSGFLLFPD_ ENSG00000159189|ENST00000374640|C1QC 29.84058131909904 0.20237991466741817 1 [YN]A[Y{I|L}]{I|L}{I|L}{M(Oxidation (M))|F}[DP] 10 6 + 35.244 0 0 2.8709 2.8709 88.076 0 0 0 7.447274948966935 3.06479076621045 3.06479076621045 35.244040791057714 0 1.1421590589602533 1.5228787452803376 0 0 [YN]A[Y{I|L}]{I|L}{I|L}{M(Oxidation (M))|F}[DP] 2.8709 - 155 NaN NaN 173003.2 NaN 22175 5037 27212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27215 105.63 NaN 69364 35 0 21767 0.261 + -1 LCPQCRRLLL 10 27 636.3557622522319 NaN 0 636.35546875 PEAK HCD FTMS 0 0 0 27212 27367.896484375 0.686778397761823 1 -0.01587677001953125 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))PQCRRLLL_ REV__ENST00000327564.11_1_17:30348397-30348457:+|nuORF 3.2813086475875832 0.33737594360511275 1 {I|L} 1 -1 6.9897 0 0 0.55007 0 0 131.09444879634663 1023.4921708097721 1154.5866196061188 0 0 0 0 0 0 0 0 0 {I|L} 0.55007 + + 1 + NaN NaN 90958.7 NaN 22176 5037 27212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27216 105.64 NaN 40382 35 0 4605.5 0.262 + -1 RWMMTKRA 8 29 548.2818603515625 NaN 0 548.2818603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _RWM(Oxidation (M))MTKRA_ REV__ENST00000354431.8_3_1:74663705-74663840:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104944.6 NaN 22177 5037 27212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27218 105.64 NaN 23458 35 0 1856.6 0.411 -1 SEACCCCCGD 10 25 639.66845703125 NaN 0 639.66845703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 5 Carbamidomethyl (C) _SEAC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))GD_ ENSG00000135272|ENST00000393486|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;nc|ENSG00000135272|Q9P1T7-1|MDFIC 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93498.2 NaN 22178 5038 27217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27220 105.65 NaN 75028 35 0 15743 0.411 -1 YYIIFSIIM 9 46 589.8134140513664 1177.6122751695327 2 589.8152465820312 MULTI HCD FTMS 0 0 0 27219 13544.037109375 0.6031469541133048 2 -0.01700592041015625 1 Oxidation (M) _YYIIFSIIM(Oxidation (M))_ ENSG00000135185|ENST00000257637|TMEM243;ENST00000481425.5_1_7:86825954-86846082:-|nuORF 9.347437153973935 0.2795965555214564 1 YY{I|L} 3 -1 25.062 0 0 2.1282 0 0 0 735.3792178787702 735.3792178787702 11.874081049124499 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 2.1282 + + 51 NaN NaN 109748.3 NaN 22179 5039 27219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27222 105.66 NaN 222230 35 0 23715 0.327 + 4863 FADYNLLDLL 10 45 598.8139380705912 1195.6133232079824 2 598.81396484375 MULTI HCD FTMS 0 0 0 27221 215217.5 0.7010177183333739 4 -0.037353515625 1 Unmodified _FADYNLLDLL_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF 57.24910588100465 0.05142613675551719 1 N{I|L}{I|L}D{I|L}{I|L} 6 4 68.889 0 0 5.7618 0 0 496.1937428205094 0 496.1937428205094 0 35.70107520596089 0 0 0 1.9247425010840047 0 0 1.1989700043360187 + N{I|L}{I|L}D{I|L}{I|L} 5.7618 + + 64 NaN NaN 121375.3 NaN 22180 5040 27221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27223 105.66 NaN 66251 35 0 14563 0.262 + 16698 LWYTPAPN 8 33 481.24109021458156 NaN 0 481.2408752441406 PEAK HCD FTMS 0 0 0 27221 24809.37109375 0.8507784559799239 59 -0.6281356811523438 2 Unmodified _LWYTPAPN_ ENST00000527304.1_1_11:65380411-65381302:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92722.2 NaN 22181 5040 27221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27225 105.67 NaN 63731 35 0 20868 0.411 + 34873 YSDLVLFFL 9 37 558.8025925440256 1115.5906321548512 2 558.802734375 MULTI HCD FTMS 0 0 0 27224 20995 0.011146975015869972 -17 0.149993896484375 1 Unmodified _YSDLVLFFL_ ENSG00000112159|ENST00000369393|MDN1 7.910154910731844 0.2910521888787154 1 N{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 6 21.682 0 0 1.9436 0 0 576.3268766334529 0 576.3268766334529 0 21.682437647924218 0 0 0 1 0 0 0 N{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.9436 - 14 + NaN NaN 102504.2 NaN 22182 5041 27224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27227 105.67 NaN 73613 35 0 3607 0.327 -1 0 45 530.6535082651833 1588.9386953957496 3 530.6533203125 MULTI HCD FTMS 0 0 0 27226 82019.265625 0.876585306550769 -3 0.024566650390625 1 NaN NaN 1 G 1 -1 2.7642 0 0 0.17397 0 0 1073.6336549678185 455.2495516412719 1528.8832066090904 0 0 0 0 0 0 0 0 0 G 0.17397 - 3 + NaN NaN 94758.9 NaN 22183 5042 27226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27228 105.68 NaN 40263 35 0 4919 0.261 + 7252 FSYLLHLM 8 32 512.2709840495299 1022.5274151658599 2 512.2705688476562 MULTI HCD FTMS 0 0 0 27226 11030.2294921875 0.2637512190515492 -14 0.11669158935546875 2 Unmodified _FSYLLHLM_ ENSG00000181472|ENST00000325144|ZBTB2 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 84636.4 NaN 22184 5042 27226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27229 105.68 NaN 57709 35 0 6592.4 0.261 -1 ETFLILMM 8 36 507.2564924831013 NaN 0 507.2564697265625 PEAK HCD FTMS 0 0 0 27226 4683.48681640625 0.2656470281306464 1 -0.01265716552734375 3 Oxidation (M) _ETFLILM(Oxidation (M))M_ ENSG00000203730|ENST00000367565|TEDDM1 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90942.8 NaN 22185 5042 27226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27231 105.69 NaN 83776 35 0 17987 0.412 + 25653 SHLPGEEH 8 54 453.209494411512 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 27230 49605.734375 0.886448502427302 -15 0.1293487548828125 1 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 2.577480529830294 0.38822285293237185 1 {I|L} 1 7 2.4743 0 0 0.27358 0 0 583.1636044462679 205.1348055475219 788.2984099937897 0 0 0 0 0 0 0 0 0 + {I|L} 0.27358 + + 3 + NaN NaN 105851.7 NaN 22186 5043 27230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27233 105.69 NaN 86992 35 0 12707 0.327 -1 0 34 572.1152322838907 NaN 0 572.3369140625 PEAK HCD FTMS 0 0 0 27232 19631.728515625 0.6082592760576668 -23 0.20166015625 1 NaN NaN 1 {I|L}D 2 -1 10.969 0 0 0.96034 0 0 164.636071288668 746.447266346907 911.0833376355749 0 0 0 0 0 0 0 0 0 {I|L}D 0.96034 - 6 + NaN NaN 95193.8 NaN 22187 5044 27232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27234 105.7 NaN 53902 35 0 8272.5 0.261 -1 MYIIPVVLF 9 33 555.8169234729331 1109.6192940126662 2 556.3190307617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 14.581692164780916 0.23437375358055648 1 {I|L}{M(Oxidation (M))|F} 2 -1 27.351 0 0 2.4649 0 0 831.4585438459 0 831.4585438459 0 27.351205051725014 0 0 0 0.7887254899964358 0 0 0 {I|L}{M(Oxidation (M))|F} 2.4649 + + 4 NaN NaN 90625.1 NaN 22188 5044 27232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27236 105.7 NaN 51382 35 0 6228 0.411 + 5639 FMMRRDQEVP 10 45 436.87935328353893 NaN 0 436.8793640136719 PEAK HCD FTMS 0 0 0 27235 19118.0625 0.6711941628254308 6 -0.06371307373046875 1 Unmodified _FMMRRDQEVP_ REV__ENSG00000236761|ENST00000314099|CTAGE9;REV__nc|ENSG00000288784|Q8IX94|CTAGE4;REV__nc|ENSG00000289604|P0CG41|CTAGE8 2.0860074813731053 0.33839895573887124 1 N 1 -1 1.9897 0 0 0.22824 0 0 435.8008990946185 318.8856295221313 754.6865286167498 0 0 0 0 0 0 0 0 0 N 0.22824 - 1 + NaN NaN 107301.2 NaN 22189 5045 27235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27238 105.71 NaN 233120 35 0 47528 0.327 + 7405 FVLVLTLTL 9 44 509.8304512396956 NaN 0 509.8205261230469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FVLVLTLTL_ REV__ENSG00000157693|ENST00000288502|TMEM268;REV__nc|ENSG00000157693|Q5VZI3-2|TMEM268;REV__nc|ENSG00000157693|Q5VZI3-3|TMEM268 9.347437153973935 0.2499504662953367 1 {I|L} 1 -1 11.99 0 0 1.1782 0 0 739.4826970577132 162.05591760806877 901.5386146657819 0 0 0 0 0 0.5 0 0 0 {I|L} 1.1782 + + 38 + NaN NaN 122806.4 NaN 22190 5046 27237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27239 105.72 NaN 108760 35 0 11746 0.261 + 765 ASILDEYENSL 11 40 648.3038423695675 1294.593131805935 2 648.30419921875 MULTI HCD FTMS 0 0 0 27237 70682.4453125 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ASILDEYENSL_ ENSG00000104142|ENST00000220509|VPS18 48.07275321834293 0.08933233718691559 1 {I|L}DEYE[NS]{I|L} 8 3 56.86 0 0 4.3921 0 0 313.16356093574376 0 313.16356093574376 0 56.85972531752853 0 0 0 2.3494850021680094 0 0 0 + {I|L}DEYE[NS]{I|L} 4.3921 + + 34 NaN NaN 96768.2 NaN 22191 5046 27237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27240 105.72 NaN 81678 35 0 5915.5 0.262 + 13776 KYPSPFFVF 9 38 566.2973873420747 1130.5802217509492 2 566.2970581054688 MULTI HCD FTMS 0 0 0 27237 25868.537109375 0.5286922741986243 -19 0.16178131103515625 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 7 23.711 0 0 2.0973 0 0 866.4335372521494 0 866.4335372521494 0 13.253800256993953 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.0973 + + 8 NaN NaN 100910.2 NaN 22192 5046 27237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27243 105.73 NaN 115950 35 0 22736 0.327 + 22549 QSFDVFIDIL 10 35 598.8138717349068 1195.6131905366135 2 598.8138427734375 MULTI HCD FTMS 0 0 0 27242 87122.1875 0.3270680802220193 3 -0.03629302978515625 1 Unmodified _QSFDVFIDIL_ REV__ENSG00000156502|ENST00000359655|SUPV3L1 18.373094154950223 0.33925629317698053 1 {I|L}D{I|L}{I|L} 4 -1 45.433 0 0 3.8 0 0 723.3231678693375 0 723.3231678693375 0 40.03205960551831 0 0 0 1.3494850021680094 0 0 0 {I|L}D{I|L}{I|L} 3.8 + + 13 NaN NaN 101849.9 NaN 22193 5048 27242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27244 105.73 NaN 367390 35 0 49011 0.261 + 26500 SVFSGFLLFPD 11 54 614.8161096954502 1227.6176664577004 2 614.8162231445312 MULTI HCD FTMS 0 0 0 27242 32292.279296875 0.43094349291146156 3 -0.03629302978515625 2 Unmodified _SVFSGFLLFPD_ ENSG00000159189|ENST00000374640|C1QC 10.799506525563784 0.36298595732910816 1 [YN]A[Y{I|L}]{I|L}{I|L}{M(Oxidation (M))|F}[DP] 10 6 + 22.219 0 0 1.8099 1.8099 86.811 0 0 0 3.4951423157418837 -1.0658141036401503E-14 -1.0658141036401503E-14 22.21877979022535 0 0.9876954943324545 1.6989700043360187 0 0 [YN]A[Y{I|L}]{I|L}{I|L}{M(Oxidation (M))|F}[DP] 1.8099 - 119 NaN NaN 137391 NaN 22194 5048 27242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27245 105.74 NaN 50918 35 0 6616.4 0.262 + 5263 FFEALEALL 9 31 526.7858976257185 1051.5572423182368 2 526.7869873046875 MULTI HCD FTMS 0 0 0 27242 4390.1103515625 0.19192699532268265 -3 0.0274200439453125 3 Unmodified _FFEALEALL_ ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF 10.823927491677226 0.26684000660059787 1 E[{I|L}A]{I|L} 4 5 26.198 0 0 2.4913 0 0 607.2994251935562 0 607.2994251935562 0 26.197887582883936 0 0 0 1 0 0 0 + E[{I|L}A]{I|L} 2.4913 + + 3 NaN NaN 97119.7 NaN 22195 5048 27242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27247 105.74 NaN 43328 35 0 4314.7 0.411 + 3714 ELYHALPF 8 43 495.2567147314072 NaN 0 495.2574462890625 PEAK HCD FTMS 0 0 0 27246 23891.955078125 0.831275544823148 31 -0.32978057861328125 1 Unmodified _ELYHALPF_ ENSG00000088035|ENST00000263440|ALG6 2.8892196856762586 0.38822285293237185 1 A 1 7 6.9897 0 0 0.7071 0 0 132.01398840698226 782.4203585260374 914.4343469330197 0 0 0 0 0 0 0 0 0 + A 0.7071 + + 2 + NaN NaN 99591.1 NaN 22196 5049 27246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27249 105.75 NaN 461480 35 0 225880 0.327 + -1 VAAAGCTC 8 42 405.1674241749077 808.3202954166154 2 405.16796875 MULTI HCD FTMS 0 0 0 27248 622953.375 0.27972060196517307 10 -0.11771392822265625 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 14.732 0 0 1.8225 0 0 540.1419334554811 152.0716951959594 692.2136286514404 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.8225 - 5 + NaN NaN 152537.1 NaN 22197 5050 27248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27250 105.76 NaN 72388 35 0 10305 0.261 -1 LCILLVLL 8 27 499.8196908892614 997.6248288453228 2 499.8196105957031 MULTI HCD FTMS 0 0 0 27248 23222.515625 0.22401975033384608 -8 0.07743072509765625 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 6.354104778181461 0.5325651638111438 1 {I|L}{I|L} 2 -1 25.969 0 0 2.6031 0 0 753.4452830373298 0 753.4452830373298 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6031 + + 2 NaN NaN 89240.2 NaN 22198 5050 27248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27251 105.76 NaN 359030 35 0 38026 0.261 + 26501 SVFSGFLLFPD 11 51 614.8161096954502 1227.6176664577004 2 614.8154907226562 MULTI HCD FTMS 0 0 0 27248 5610.02880859375 0.07486636009441654 5 -0.06407928466796875 3 Unmodified _SVFSGFLLFPD_ ENSG00000159189|ENST00000374640|C1QC 29.84058131909904 0.20237991466741817 1 [YN]A[Y{I|L}]{I|L}{I|L}{M(Oxidation (M))|F}[DP] 10 6 + 35.128 0 0 2.8615 2.8615 87.839 0 0 0 10.51924358097537 7.961434083857526 7.961434083857526 31.07963467823146 0 0.8807196863200843 1.5228787452803376 0 0 [YN]A[Y{I|L}]{I|L}{I|L}{M(Oxidation (M))|F}[DP];[YN][RD][RK]{M(Oxidation (M))|F}{[ET]|[MV]} 2.8615;0.32981 -;- 133 NaN NaN 161677.4 NaN 22199 5050 27248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27252 105.76 NaN 63772 35 0 6344.2 0.262 + 5264 FFEALEALL 9 43 526.7858976257185 1051.5572423182368 2 526.78564453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FFEALEALL_ ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF 10.823927491677226 0.26684000660059787 1 E[{I|L}A]{I|L} 4 5 26.198 0 0 2.4913 0 0 607.3003407209 0 607.3003407209 0 26.197887582883936 0 0 0 1 0 0 0 + E[{I|L}A]{I|L} 2.4913 + + 13 NaN NaN 81079.1 NaN 22200 5050 27248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27254 105.77 NaN 66502 35 0 17262 0.327 + 32423 WARGCLCP 8 32 453.209494411512 NaN 0 453.2093505859375 PEAK HCD FTMS 0 0 0 27253 29474.44921875 0.5267048598114923 -7 0.073150634765625 1 Unmodified _WARGCLCP_ ENST00000493076.5_1_22:35819109-35819445:+|nuORF 0.7936320650641473 0.38822285293237185 1 W 1 7 1.5938 0 0 0.17623 0 0 548.5192563017366 166.78687463931877 715.3061309410554 0 0 0 0 0 0 0 0 0 + W 0.17623 + + 1 + NaN NaN 98787 NaN 22201 5051 27253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27255 105.77 NaN 59752 35 0 14239 0.261 + 14996 LLLIQITE 8 29 471.7955975373082 NaN 0 471.7961730957031 PEAK HCD FTMS 0 0 0 27253 16220.2021484375 0.49156584865531133 -14 0.1416168212890625 2 Unmodified _LLLIQITE_ ENSG00000198765|ENST00000369522|SYCP1 0.7936320650641473 0.38822285293237185 1 W 1 8 1.5938 0 0 0.16927 0 0 605.3729505904383 147.10398279361564 752.476933384054 0 0 0 0 0 0 0 0 0 W 0.16927 - 1 + NaN NaN 92804.1 NaN 22202 5051 27253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27257 105.78 NaN 286370 35 0 45338 0.327 + 4864 FADYNLLDLL 10 50 598.8138717349068 1195.6131905366135 2 598.8137817382812 MULTI HCD FTMS 0 0 0 27256 175383.703125 0.6584133471547913 7 -0.0823974609375 1 Unmodified _FADYNLLDLL_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF 57.24910588100465 0.05142613675551719 1 N{I|L}{I|L}D{I|L}{I|L} 6 4 66.688 0 0 5.5777 0 0 496.19600112129064 0 496.19600112129064 0 35.88554074136319 0 0 0 1.8494850021680094 0 0 1.2302046884880937 + N{I|L}{I|L}D{I|L}{I|L} 5.5777 + + 76 NaN NaN 125403.6 NaN 22203 5052 27256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27258 105.78 NaN 44195 35 0 4128.9 0.261 + 16878 LYFDVEPFVF 10 30 638.3185815422453 1274.6226101512905 2 638.318603515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LYFDVEPFVF_ ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF;nc|ENSG00000103510|Q9H7Z6-2|KAT8 3.5964929083625545 0.45626689593999237 1 {M(Oxidation (M))|F} 1 9 6.2371 0 0 0.48933 0 0 508.26953505539046 616.2821138971311 1124.5516489525216 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 0.48933 + + 2 + NaN NaN 91017.7 NaN 22204 5052 27256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27260 105.79 NaN 976780 35 0 133660 0.327 + 17524 LYVDSLFFL 9 43 558.8025925440256 1115.5906321548512 2 558.8026123046875 MULTI HCD FTMS 0 0 0 27259 171424.625 0.09101528992521453 -5 0.05536651611328125 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 109.62928328672726 0.0030029239606406397 1 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 92.374 0 0 8.2803 8.2803 97.235 0 0 0 12.847492653319392 74.74932183384787 12.847492653319392 69.72479721008234 0 2.5 1.3010299956639813 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[TV]|[{I|L}S]}{[ET]|[MV]}{M(Oxidation (M))|F}{I|L} 8.2803;2.0302 +;- + 266 NaN NaN 235189 NaN 22205 5053 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27261 105.79 NaN 104180 35 0 17028 0.261 + 28844 TVHYFSFLI 9 25 563.800578694146 1125.586604455092 2 563.8001708984375 MULTI HCD FTMS 0 0 0 27259 3563.644775390625 0.058316701313046664 8 -0.0901031494140625 2 Unmodified _TVHYFSFLI_ REV__DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant;REV__ENSG00000135905|ENST00000258390|DOCK10;REV__nc|ENSG00000135905|Q96BY6-3|DOCK10 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 36.198 0 0 3.2159 0 0 734.3385487287125 0 734.3385487287125 0 34.20818753952375 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.2159 + + 8 NaN NaN 96871.5 NaN 22206 5053 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27262 105.79 NaN 41243 35 0 6728.6 0.261 + -1 NYILLMGLCF 10 28 622.3160608317507 NaN 0 622.31689453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _NYILLMGLC(Carbamidomethyl (C))F_ REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|7|1|sense;REV__SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|14|3|sense;REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense 10.823927491677226 0.33092050725491123 1 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.426969220339 274.0834139459594 1126.5103831662984 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 2 + NaN NaN 87678.9 NaN 22207 5053 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27263 105.8 NaN 37264 35 0 6025.1 0.261 + 20727 PFYDMIHQAQ 10 25 625.2868041992188 NaN 0 625.2868041992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PFYDMIHQAQ_ CON__P17697 1.4819007175156935 0.33891598740166873 1 {I|L} 1 9 14.732 0 0 1.1809 0 0 652.2506611310563 479.1952530147023 1131.4459141457587 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.1809 + + 3 + NaN NaN 90549.1 NaN 22208 5053 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27264 105.8 NaN 40580 35 0 10986 0.261 + 35783 YYMLQRSSM 9 23 589.7719116210938 NaN 0 589.7719116210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YYMLQRSSM_ nc|ENSG00000278540|Q13085-2|ACACA 5.230669730166228 0.26989974671959066 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85902 NaN 22209 5053 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27266 105.81 NaN 61393 35 0 4221 0.327 -1 0 42 530.6535082651833 1588.9386953957496 3 530.6538696289062 MULTI HCD FTMS 0 0 0 27265 46315.0234375 0.49499430052799853 9 -0.0857391357421875 1 NaN NaN 1 T 1 -1 6.9897 0 0 0.4399 0 0 1073.6339601435998 411.22455774478755 1484.8585178883873 0 0 0 0 0 0 0 0 0 T 0.4399 - 2 + NaN NaN 97859.1 NaN 22210 5054 27265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27267 105.81 NaN 52116 35 0 8442.3 0.261 + 14782 LIFGCAPGFV 10 37 512.2709840495299 1022.5274151658599 2 512.2710571289062 MULTI HCD FTMS 0 0 0 27265 37178.75 0.8890060394716305 -2 0.028778076171875 2 Unmodified _LIFGCAPGFV_ REV__ENSG00000176463|ENST00000318445|SLCO3A1;REV__ENST00000553653.5_1_15:92397138-92694297:+|nuORF;REV__nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;REV__nc|ENSG00000176463|Q9UIG8-3|SLCO3A1 1.844237919475145 0.46554186016084764 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 11 NaN NaN 88660.7 NaN 22211 5054 27265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27269 105.81 NaN 102860 35 0 10969 0.411 + 14388 LEFTQSHLGE 10 52 580.7846812783993 NaN 0 580.7849731445312 PEAK HCD FTMS 0 0 0 27268 19147.572265625 0.39743748265895906 -14 0.14907073974609375 1 Unmodified _LEFTQSHLGE_ ENST00000570589.5_1_17:55065091-55074421:+|nuORF 4.897010918128616 0.3359931263921593 1 {M(Oxidation (M))|F}P 2 9 9.464 0 0 0.81617 0 0 151.1010243903783 761.3088472955686 912.4098716859469 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P 0.81617 - 9 + NaN NaN 115585.3 NaN 22212 5055 27268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27271 105.82 NaN 116760 35 0 6674.4 0.411 + 34774 YQPGDHLGVF 10 62 566.7757914177689 1131.5370299023377 2 566.7750244140625 MULTI HCD FTMS 0 0 0 27270 17715.587890625 0.5833446846025725 -12 0.1287078857421875 1 Unmodified _YQPGDHLGVF_ ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-2|NOS1;nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-5|NOS1 10.823927491677226 0.4098686510432541 1 SW 2 10 26.013 0 0 2.2989 0 0 840.4141603114513 0 840.4141603114513 0 12.034021960761265 0 0 0 0.805462187404089 0 0 0 SW 2.2989 - 169 NaN NaN 119497.2 NaN 22213 5056 27270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27273 105.83 NaN 276010 35 0 59123 0.327 + 29975 VFIIVPAIF 9 45 509.82054057447107 1017.6265282157422 2 509.82049560546875 MULTI HCD FTMS 0 0 0 27272 57274.39453125 0.22876071367656664 12 -0.11695098876953125 1 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 45.7499826716795 0.03894913563566938 1 {I|L}V[PA]{I|L}{M(Oxidation (M))|F} 6 3 43.148 0 0 4.2401 0 0 359.2216053693375 0 359.2216053693375 0 36.11432819416656 0 0 0 1.9247425010840047 0 0 0 + {I|L}V[PA]{I|L}{M(Oxidation (M))|F} 4.2401 + + 26 NaN NaN 136855.8 NaN 22214 5057 27272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27274 105.83 NaN 46757 35 0 4207.4 0.261 + -1 VCIFDSIFF 9 35 574.276732478649 NaN 0 573.7991333007812 PEAK HCD FTMS 0 0 0 27272 8980.09765625 0.4492052265888507 12 -0.11695098876953125 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))IFDSIFF_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 5.230669730166228 0.26989974671959066 1 {M(Oxidation (M))|F}{I|L} 2 -1 10.969 0 0 0.95671 0 0 166.04446341994134 717.3270968072874 883.3715602272287 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.95671 - 8 + NaN NaN 97339.6 NaN 22215 5057 27272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27276 105.84 NaN 538010 35 0 146770 0.327 -1 SSMSEEQLSR 10 58 585.2583700476981 1168.5021871621962 2 585.2583618164062 MULTI HCD FTMS 0 0 0 27275 301771.5625 1 0 0 1 Oxidation (M) _SSM(Oxidation (M))SEEQLSR_ ENSG00000284283|ENST00000638408|TAF11L4 5.731851221503515 0.44496410492002586 1 SA 2 -1 14.949 0 0 1.2793 0 0 0 1007.3979628977016 1007.3979628977016 7.161903266879719 0 0 0 0 0 0 0 0 SA 1.2793 - 16 + NaN NaN 165823.2 NaN 22216 5058 27275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27277 105.84 NaN 77201 35 0 18389 0.263 + 19200 NIHFNSSS 8 30 453.209494411512 NaN 0 453.2095947265625 PEAK HCD FTMS 0 0 0 27275 55960.0859375 1 0 0 2 Unmodified _NIHFNSSS_ REV__CON__P19012;REV__ENSG00000171346|ENST00000254043|KRT15 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100958.9 NaN 22217 5058 27275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27278 105.85 NaN 160810 35 0 38668 0.261 + -1 FFVPILYIC 9 42 586.3152737458106 NaN 0 586.31591796875 PEAK HCD FTMS 0 0 0 27275 16862.4609375 0.34099324465603154 -13 0.13623046875 3 Carbamidomethyl (C) _FFVPILYIC(Carbamidomethyl (C))_ REV__ENST00000370251.3_2_X:152616633-152616939:+|nuORF 2.302733041254933 0.2840881193086663 1 {I|L} 1 -1 6.9897 0 0 0.5971 0 0 132.09837313531176 922.4135154020095 1054.5118885373213 0 0 0 0 0 0 0 0 0 {I|L} 0.5971 + + 4 + NaN NaN 105051.4 NaN 22218 5058 27275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27279 105.85 NaN 90785 35 0 10873 0.261 + 13777 KYPSPFFVF 9 29 566.2973873420747 1130.5802217509492 2 566.2969970703125 MULTI HCD FTMS 0 0 0 27275 48271.5625 0.9865576104803024 -8 0.0885772705078125 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 8.745405648335112 0.2847203663274469 1 V{M(Oxidation (M))|F} 2 7 23.271 0 0 2.0583 0 0 866.4300404279312 0 866.4300404279312 0 12.302046884880937 0 0 0 0.3807196863200844 0 0 0 + V{M(Oxidation (M))|F} 2.0583 + + 26 NaN NaN 97277.4 NaN 22219 5058 27275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27280 105.85 NaN 125100 35 0 28938 0.261 + 17072 LYLAFPLAF 9 36 527.8023879504774 1053.5902229677547 2 527.8025512695312 MULTI HCD FTMS 0 0 0 27275 54524.28515625 0.15394099812741485 -13 0.13623046875 5 Unmodified _LYLAFPLAF_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 14.581692164780916 0.23437375358055648 1 {M(Oxidation (M))|F} 1 8 14.732 0 0 1.3983 0 0 460.26980168044844 443.229732664383 903.4995343448314 0 0 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.3983 + + 3 + NaN NaN 102471.6 NaN 22220 5058 27275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27282 105.86 NaN 32703 35 0 4234.8 0.327 -1 ALELEMWKEM 10 24 648.3038423695675 1294.593131805935 2 648.3041381835938 MULTI HCD FTMS 0 0 0 27281 24293.77734375 0.34370312510189444 13 -0.1177520751953125 1 Oxidation (M) _ALELEM(Oxidation (M))WKEM_ ENSG00000168944|ENST00000306467|CEP120;ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120 4.897010918128616 0.4493830473644964 1 {I|L}M 2 -1 18.583 0 0 1.4355 0 0 868.3450676963631 179.10018335513908 1047.4452510515023 0 0 0 0 0 1 0 0 0 {I|L}M 1.4355 - 4 + NaN NaN 87476 NaN 22221 5059 27281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27283 105.86 NaN 35425 35 0 3618.4 0.261 -1 DYMNLLGMIF 10 30 624.7862088598198 NaN 0 624.787109375 PEAK HCD FTMS 0 0 0 27281 19672.80859375 0.6615859469839431 -6 0.0729522705078125 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 10.799506525563784 0.33094140821724455 1 {I|L} 1 -1 15.797 0 0 1.2662 0 0 482.219804338977 649.2295015924436 1131.4493059314207 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L} 1.2662 + + 6 + NaN NaN 108399.9 NaN 22222 5059 27281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27285 105.87 NaN 1037800 35 0 503130 0.411 + -1 VAAAGCTC 8 58 405.1674241749077 808.3202954166154 2 405.16796875 MULTI HCD FTMS 0 0 0 27284 528299.8125 0.23721894366586915 20 -0.2043609619140625 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L}K 2 -1 21.454 0 0 2.6541 0 0 155.09361749737872 409.01352869205317 564.1071461894319 0 0 0 0 0 0.9247425010840047 0 0 0.9247425010840047 {I|L}K 2.6541 - 13 + NaN NaN 392204.6 NaN 22223 5060 27284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27287 105.88 NaN 106190 35 0 16084 0.411 -1 LCILLVLL 8 52 499.8196908892614 997.6248288453228 2 499.8193664550781 MULTI HCD FTMS 0 0 0 27286 32950.328125 0.3178606658804135 3 -0.0243682861328125 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 11.114462752807354 0.5120171699125776 1 V{I|L}{I|L} 3 -1 31.198 0 0 3.1272 0 0 654.37797743965 0 654.37797743965 0 29.20818753952375 0 0 0 0.5 0 0 0 V{I|L}{I|L} 3.1272 + + 9 NaN NaN 107862.4 NaN 22224 5061 27286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27289 105.88 NaN 307380 35 0 50371 0.412 + 26502 SVFSGFLLFPD 11 64 614.8161096954502 1227.6176664577004 2 614.7935180664062 MULTI HCD FTMS 0 0 0 27288 18032.556640625 0.2406461579683763 15 -0.1509552001953125 1 Unmodified _SVFSGFLLFPD_ ENSG00000159189|ENST00000374640|C1QC 10.799506525563784 0.36298595732910816 1 [YN]AW 4 11 27.906 0 0 2.2732 0 0 0 690.3693503778753 690.3693503778753 7.271212547196626 0 0 0 0 0 1.5228787452803376 0 0.25 [YN]AW 2.2732 - 157 NaN NaN 182097.5 NaN 22225 5062 27288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27291 105.89 NaN 82567 35 0 8558.9 0.327 + 26552 SVMNPKPSSW 10 42 566.7757914177689 1131.5370299023377 2 567.27685546875 MULTI HCD FTMS 0 0 0 27290 15371.8349609375 0.3956937871931711 -4 0.0321197509765625 1 Unmodified _SVMNPKPSSW_ ENSG00000018408|ENST00000360632|WWTR1;WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant 7.608950283845883 0.4350283211712914 1 SW 2 8 26.766 0 0 2.3655 0 0 840.4139093369602 0 840.4139093369602 0 7.302046884880937 0 0 0 0.8807196863200843 0 0 0 + SW 2.3655 + + 30 NaN NaN 101056.5 NaN 22226 5063 27290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27292 105.9 NaN 57687 35 0 7059.6 0.261 + 31258 VVTLILLLLL 10 33 555.4005923501119 NaN 0 555.4008178710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VVTLILLLLL_ ENSG00000122223|ENST00000368034|CD244;nc|ENSG00000122223|Q9BZW8-3|CD244;nc|ENSG00000122223|Q9BZW8-4|CD244;nc|ENSG00000122223|Q9BZW8|CD244 0 0.34018428902965525 1 D 1 10 4.6041 0 0 0.41524 0 0 639.499779815655 351.2282808893188 990.7280607049738 0 0 0 0 0 0 0 0 0 D 0.41524 - 2 + NaN NaN 94958.8 NaN 22227 5063 27290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27295 105.91 NaN 1581300 35 0 221930 0.411 + 17525 LYVDSLFFL 9 90 558.8025963571589 1115.5906397811177 2 558.8025512695312 MULTI HCD FTMS 0 0 0 27294 426295.8125 0.21129596316286597 -6 0.04853057861328125 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 137.58523961978855 0.00014495867019203413 1 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 96.635 0 0 8.6622 8.6622 93.545 0 0 0 15.316658315635081 63.2699217471275 15.316658315635081 10.268024924119672 0 2.4247425010840047 1.3010299956639813 1.555462187404089 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VDTV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]VDS{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YV]{I|L}DS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SDV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]VDTV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VDT{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[Y{I|L}]VDS{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YV]{I|L}DS{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8.6622;7.7418;7.4348;7.1152;7.0273;6.63;6.5144;6.3204;6.1948;6.1069 +;-;-;-;-;-;-;-;-;- + 2514 NaN NaN 565419.6 NaN 22228 5065 27294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27298 105.92 NaN 65775 35 0 8757.9 0.327 + 16879 LYFDVEPFVF 10 26 638.3185815422453 1274.6226101512905 2 638.8201293945312 MULTI HCD FTMS 0 0 0 27297 35041.4140625 1 0 0 1 Unmodified _LYFDVEPFVF_ ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF;nc|ENSG00000103510|Q9H7Z6-2|KAT8 3.5964929083625545 0.45626689593999237 1 T 1 10 10.485 0 0 0.82256 0 0 665.307010641328 505.2447709311703 1170.5517815724984 0 0 0 0 0 0.5 0 0 0 T 0.82256 - 3 + NaN NaN 99882.1 NaN 22229 5067 27297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27299 105.93 NaN 147540 35 0 24599 0.262 + -1 LYLAIPNIC 9 36 538.7934124704748 1075.5722720077495 2 538.7930297851562 MULTI HCD FTMS 0 0 0 27297 27171.978515625 0.4831997719883713 -4 0.03054046630859375 2 Carbamidomethyl (C) _LYLAIPNIC(Carbamidomethyl (C))_ REV__ENSG00000136160|ENST00000646607|EDNRB;REV__nc|ENSG00000136160|P24530-2|EDNRB;REV__nc|ENSG00000136160|P24530-3|EDNRB 23.1484247019978 0.1603590852062899 1 [Y{I|L}]{I|L}A{M(Oxidation (M))|F} 5 -1 49.521 0 0 4.6041 0 0 0 465.21161829166255 465.21161829166255 49.5205343810445 0 0 0 0 1.579689690656103 1.3010299956639813 0 0 [Y{I|L}]{I|L}A{M(Oxidation (M))|F} 4.6041 - 25 + NaN NaN 104727.8 NaN 22230 5067 27297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27300 105.93 NaN 66151 35 0 10071 0.261 + -1 TQKDMRKVS 9 36 554.7918607115909 NaN 0 554.7915649414062 PEAK HCD FTMS 0 0 0 27297 14196.185546875 1 0 0 3 Oxidation (M) _TQKDM(Oxidation (M))RKVS_ REV__ENSG00000166352|ENST00000334307|IFTAP;REV__ENST00000524539.1_1_11:36631653-36669795:+|nuORF;REV__nc|ENSG00000166352|Q86VG3-2|IFTAP 1.4819007175156935 0.28806575819904134 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96781.3 NaN 22231 5067 27297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27301 105.93 NaN 52052 35 0 6072.6 0.261 + -1 AQCSVQDQIE 10 30 589.2628784179688 NaN 0 589.2628784179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _AQC(Carbamidomethyl (C))SVQDQIE_ REV__ENSG00000196935|ENST00000355086|SRGAP1;REV__ENST00000537585.1_1_12:64505608-64509723:+|nuORF;REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1 1.1933415558491238 0.33916295405077446 1 V 1 -1 6.9897 0 0 0.59512 0 0 128.99275831713777 943.4298800104124 1072.4226383275502 0 0 0 0 0 0 0 0 0 V 0.59512 + + 1 + NaN NaN 94290.7 NaN 22232 5067 27297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27303 105.94 NaN 43520 35 0 5032.8 0.327 -1 0 35 530.6535082651833 1588.9386953957496 3 530.6541137695312 MULTI HCD FTMS 0 0 0 27302 21813.775390625 0.23313589608625124 23 -0.2474517822265625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85590.8 NaN 22233 5068 27302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27304 105.94 NaN 60919 35 0 8307.7 0.261 + 10172 IFSQRLSLF 9 35 555.8172585480323 NaN 0 555.8178100585938 PEAK HCD FTMS 0 0 0 27302 5375.10986328125 0.20182671814316175 1 -0.009552001953125 2 Unmodified _IFSQRLSLF_ tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1 5.731851221503515 0.26747109115447115 1 {I|L} 1 8 11.237 0 0 1.0127 0 0 165.0801248559954 828.4314344867745 993.5115593427699 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 1.0127 + + 1 + NaN NaN 96120.2 NaN 22234 5068 27302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27306 105.95 NaN 73601 35 0 6638 0.411 -1 MLLNQPQSW 9 55 566.7757914177689 1131.5370299023377 2 567.2777709960938 MULTI HCD FTMS 0 0 0 27305 13838.4755859375 0.35622284701174595 2 -0.01696014404296875 1 Oxidation (M) _M(Oxidation (M))LLNQPQSW_ nc|ENSG00000291164|Q6ZMU1|C3P1 13.90604991867851 0.24021115267848145 1 {M(Oxidation (M))|F}GC(Carbamidomethyl (C))[WR]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 -1 + 36.892 0 0 3.2603 3.2603 80.565 0 0 0 28.932984749606092 0.28273777167043335 0.28273777167043335 3.0102999566398125 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}GC(Carbamidomethyl (C))[WR]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}GW[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}G[CG][WR]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}GSV{[YC]|[HE]}[{I|L}A]SW;{M(Oxidation (M))|F}GSV{[YC]|[HE]}[KP][MT];[YQ][{I|L}A]{[YC]|[HE]}VSW;[YN]{I|L}{[YC]|[HE]}[{I|L}A]SW;[YQ][{I|L}A]{[YC]|[HE]}W[VS];[YQ][{I|L}A][HM]PS[VS];{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[YC]|[HE]}W[VS] 3.2603;2.9943;2.4418;2.4413;1.6326;1.4972;1.2046;0.54797;0.52775;0.36713 -;-;-;-;-;-;-;-;-;- 342 + NaN NaN 108785.6 NaN 22235 5069 27305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27308 105.95 NaN 85793 35 0 13107 0.327 + 29976 VFIIVPAIF 9 38 509.82054057447107 1017.6265282157422 2 509.8201904296875 MULTI HCD FTMS 0 0 0 27307 13996.771484375 0.05590476268040544 25 -0.2769927978515625 1 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 20.871210003555333 0.18003371494288972 1 {M(Oxidation (M))|F} 1 8 21.99 0 0 2.1609 0 0 852.5477298532406 0 852.5477298532406 0 8.450528104279016 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.1609 + + 3 + NaN NaN 104144.2 NaN 22236 5070 27307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27309 105.96 NaN 45723 35 0 9094.9 0.261 + 5292 FFFLFGFV 8 30 512.2709840495299 1022.5274151658599 2 512.2703857421875 MULTI HCD FTMS 0 0 0 27307 18331.79296875 0.4383438029401828 14 -0.15319061279296875 2 Unmodified _FFFLFGFV_ REV__ENST00000301454.8_1_19:6441086-6441584:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 90523.4 NaN 22237 5070 27307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27311 105.96 NaN 649820 35 0 214220 0.327 -1 0 55 585.2582747152057 1168.5019964972114 2 585.2583618164062 MULTI HCD FTMS 0 0 0 27310 337286.90625 0.9927968475342387 5 -0.061492919921875 1 NaN NaN 1 P{M(Oxidation (M))|F}{I|L} 3 -1 21.203 0 0 1.8145 0 0 793.2884999005875 0 793.2884999005875 0 6.254471812167779 0 0 0 0.8807196863200843 0 0 0 P{M(Oxidation (M))|F}{I|L} 1.8145 - 64 NaN NaN 178958.3 NaN 22238 5071 27310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27312 105.97 NaN 72009 35 0 7017.2 0.261 + 8834 HLDLASCTSIT 11 41 580.7846812783993 NaN 0 580.78466796875 PEAK HCD FTMS 0 0 0 27310 48177.5703125 1 0 0 2 Unmodified _HLDLASCTSIT_ ENSG00000108306|ENST00000264658|FBXL20 2.9952420565917617 0.33362350433860827 1 C 1 10 0.3786 0 0 0.032651 0 0 636.317335113636 417.1973971002563 1053.5147322138923 0 0 0 0 0 0 0 0 0 + C 0.032651 + + 1 + NaN NaN 96908.2 NaN 22239 5071 27310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27313 105.97 NaN 37416 35 0 5967.9 0.261 -1 0 27 572.1152322838907 NaN 0 572.1156616210938 PEAK HCD FTMS 0 0 0 27310 23902.5546875 0.7405843351274907 4 -0.0545196533203125 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99829.2 NaN 22240 5071 27310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27315 105.98 NaN 545550 35 0 99575 0.327 + 11649 IYVIVVNCSE 10 59 569.7938918545358 1137.5732307758715 2 569.7938232421875 MULTI HCD FTMS 0 0 0 27314 308770.8125 0.5971030127859662 1 -0.01956939697265625 1 Unmodified _IYVIVVNCSE_ DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF;nc|ENSG00000183914|Q9P225-2|DNAH2 17.11289562659939 0.35104376501799556 1 {I|L}YVD{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 7 6 54.87 0 0 4.8234 0 0 0 297.12314783267817 297.12314783267817 38.92744800765776 0 0 0 0 1.566901560044258 2 0 0 {I|L}YVD{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 4.8234 - 143 + NaN NaN 166700 NaN 22241 5072 27314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27316 105.98 NaN 382780 35 0 106140 0.261 + 17073 LYLAFPLAF 9 37 527.8023879504774 1053.5902229677547 2 527.8024291992188 MULTI HCD FTMS 0 0 0 27314 330786.15625 0.933924230531961 1 -0.01956939697265625 2 Unmodified _LYLAFPLAF_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 67.41302359171755 0.009925318700911543 1 [Y{I|L}]{I|L}A{M(Oxidation (M))|F}[{I|L}P]A{M(Oxidation (M))|F} 9 0 + 56.348 0 0 5.3482 5.3482 91.881 0 0 0 5.6424927368725974 49.35850004969453 5.6424927368725974 56.348200093054714 0 2.3494850021680094 0 0 0 + + [Y{I|L}]{I|L}A{M(Oxidation (M))|F}[{I|L}P]A{M(Oxidation (M))|F} 5.3482 + + 66 NaN NaN 136165.8 NaN 22242 5072 27314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27317 105.98 NaN 81351 35 0 7388 0.261 + 13778 KYPSPFFVF 9 37 566.2973873420747 1130.5802217509492 2 566.2970581054688 MULTI HCD FTMS 0 0 0 27314 35726.3125 0.730162100952762 5 -0.05780029296875 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 1 V{M(Oxidation (M))|F} 2 7 23.271 0 0 2.0583 0 0 866.4328477591094 0 866.4328477591094 0 7.073259432077563 0 0 0 0.3807196863200844 0 0 0 + V{M(Oxidation (M))|F} 2.0583 + + 51 NaN NaN 104036.8 NaN 22243 5072 27314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27318 105.99 NaN 93002 35 0 20039 0.261 -1 0 42 597.372915648946 596.365639182346 1 598.814208984375 MULTI HCD FTMS 0 0 0 27314 16369.634765625 0.38876044498345325 13 -0.1405792236328125 4 NaN NaN 1 {I|L}D{I|L}{I|L} 4 -1 8.6721 0 0 1.4542 0 0 124.07500946948677 0 124.07500946948677 0 8.672137691284407 0 0 0 0 0 0 0 {I|L}D{I|L}{I|L} 1.4542 - 7 + NaN NaN 110251.8 NaN 22244 5072 27314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27319 105.99 NaN 62217 35 0 6898.7 0.261 -1 MYIIPVVLF 9 43 555.8172585480323 NaN 0 555.8180541992188 PEAK HCD FTMS 0 0 0 27314 12984.4462890625 0.48754504523334197 4 -0.04868316650390625 5 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 9.347437153973935 0.2499504662953367 1 {I|L} 1 -1 11.237 0 0 1.0127 0 0 165.07765543443685 828.4345797174436 993.5122351518805 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.0127 + + 2 + NaN NaN 104141.2 NaN 22245 5072 27314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27321 106 NaN 260810 35 0 112110 0.327 + -1 VAAAGCTC 8 43 405.1674241749077 808.3202954166154 2 405.16790771484375 MULTI HCD FTMS 0 0 0 27320 271655.65625 0.12197972872928754 33 -0.3615264892578125 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 13.979 0 0 1.7294 0 0 155.09380162192184 537.118841298178 692.2126429200998 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 6 + NaN NaN 124642.1 NaN 22246 5073 27320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27322 106 NaN 53470 35 0 6523.8 0.261 -1 DYMNLLGMIF 10 35 624.786381356357 1247.5582097795138 2 624.7860107421875 MULTI HCD FTMS 0 0 0 27320 5241.0361328125 0.1596171357015156 1 -0.00959014892578125 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 10.799506525563784 0.4100970765206026 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 32.218 0 0 2.5825 0 0 652.2512074201187 0 652.2512074201187 0 32.21848749616356 0 0 0 1 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.5825 + + 7 NaN NaN 91419.6 NaN 22247 5073 27320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27324 106.01 NaN 120200 35 0 18478 0.411 -1 LCILLVLL 8 54 499.8196384958989 997.6247240585978 2 499.8198547363281 MULTI HCD FTMS 0 0 0 27323 44369.69140625 0.392503780546996 3 -0.0286407470703125 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 32.45364647766026 0.3278715449852315 1 {I|L}V{I|L}{I|L} 4 -1 41.375 0 0 4.1473 0 0 541.2940540998062 0 541.2940540998062 0 41.37492705584647 0 0 0 1.0941876774005248 0 0 0 {I|L}V{I|L}{I|L} 4.1473 + + 11 NaN NaN 117343.6 NaN 22248 5074 27323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27327 106.02 NaN 892060 35 0 134210 0.327 + 17526 LYVDSLFFL 9 47 558.8025963571589 1115.5906397811177 2 558.8025512695312 MULTI HCD FTMS 0 0 0 27326 769732 0.38152207821013756 5 -0.0547332763671875 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 109.62928328672726 0.0030029239606406397 1 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 93.382 0 0 8.3707 8.3707 97.656 0 0 0 15.871280189675971 79.15714005218824 15.871280189675971 93.38222205381598 0 2.4247425010840047 1.3010299956639813 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.3707 + + 211 NaN NaN 225594.3 NaN 22249 5076 27326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27328 106.03 NaN 46650 35 0 8879.3 0.261 + 34580 YPMFPQKI 8 36 512.2709840495299 1022.5274151658599 2 512.2720947265625 MULTI HCD FTMS 0 0 0 27326 15518.1669921875 0.37106530417466954 20 -0.2256317138671875 2 Unmodified _YPMFPQKI_ ENST00000472704.1_1_X:41411986-41437658:-|nuORF 0.7936320650641473 0.540814922690045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 96475.6 NaN 22250 5076 27326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27330 106.03 NaN 227540 35 0 36311 0.327 + 14927 LLEKIKKMKV 10 54 615.4039911383496 NaN 0 615.4051513671875 PEAK HCD FTMS 0 0 0 27329 50483.703125 3.3581514829331866E-06 -163 1.6288223266601562 1 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 1.4819007175156935 0.33891598740166873 1 AWV 3 -1 13.188 0 0 1.0732 0 0 278.32936264275264 591.2568453424436 869.5862079851963 0 0 0 0 0 0 0 0 0 AWV 1.0732 - 35 + NaN NaN 120806.9 NaN 22251 5077 27329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27331 106.04 NaN 114190 35 0 10815 0.261 + 17992 MLEDWIKPE 9 48 580.7846812783993 NaN 0 580.8037109375 PEAK HCD FTMS 0 0 0 27329 20503.1171875 0.42557391446908077 5 -0.0528564453125 2 Unmodified _MLEDWIKPE_ ENSG00000138792|ENST00000265162|ENPEP 6.723162845929126 0.26266733336404485 1 PE{I|L}Y 4 7 18.928 0 0 1.6323 0 0 147.03047779872037 507.2595308893188 654.2900086880392 0 0 0 0 0 0 0 0 0 PE{I|L}Y 1.6323 - 16 + NaN NaN 113447.3 NaN 22252 5077 27329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27332 106.04 NaN 36250 35 0 5253.4 0.261 -1 DYMNLLGMIF 10 23 624.786381356357 1247.5582097795138 2 624.7880249023438 MULTI HCD FTMS 0 0 0 27329 21423.908203125 0.652470766516151 5 -0.0528564453125 3 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 12.240655878213236 0.39661705172222156 1 {I|L}[WM]{M(Oxidation (M))|F} 4 -1 26.198 0 0 2.0999 0 0 652.2525501935562 0 652.2525501935562 0 26.197887582883936 0 0 0 1 0 0 0 {I|L}[WM]{M(Oxidation (M))|F} 2.0999 - 4 NaN NaN 87654.7 NaN 22253 5077 27329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27334 106.05 NaN 747550 35 0 87542 0.327 + 11650 IYVIVVNCSE 10 56 569.7938918545358 1137.5732307758715 2 569.8128662109375 MULTI HCD FTMS 0 0 0 27333 124806.546875 0.24135171505070743 7 -0.0700225830078125 1 Unmodified _IYVIVVNCSE_ DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF;nc|ENSG00000183914|Q9P225-2|DNAH2 17.11289562659939 0.35104376501799556 1 {I|L}YVDTV 6 6 55.628 0 0 4.89 0 0 0 444.1921203455218 444.1921203455218 34.65858457933251 0 0 0 0 1.1549471895720984 2 0 0 {I|L}YVDTV 4.89 - 337 + NaN NaN 199405.5 NaN 22254 5078 27333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27335 106.05 NaN 155540 35 0 26458 0.261 + 33761 YLFIAFVGF 9 40 538.7934124704748 1075.5722720077495 2 538.7932739257812 MULTI HCD FTMS 0 0 0 27333 41368.8203125 0.7356624594316228 7 -0.0700225830078125 2 Unmodified _YLFIAFVGF_ ENSG00000183908|ENST00000497933|LRRC55 20.871210003555333 0.18003371494288972 1 [Y{I|L}]{I|L}A{M(Oxidation (M))|F} 5 4 41.995 0 0 3.9044 0 0 0 465.21235071353755 465.21235071353755 41.99478448944497 0 0 0 0 0.7302046884880937 1.3979400086720375 0 0 [Y{I|L}]{I|L}A{M(Oxidation (M))|F} 3.9044 - 8 + NaN NaN 108980.5 NaN 22255 5078 27333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27337 106.06 NaN 408780 35 0 93354 0.327 + 19801 NYAWVYYHL 9 54 614.7936784987628 1227.5728040643255 2 614.7933959960938 MULTI HCD FTMS 0 0 0 27336 46952.85546875 0.7485836771575479 3 -0.03047943115234375 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 31.26834338654808 0.10542797264966089 1 [YN]AWV 5 4 48.698 0 0 3.967 0 0 0 591.2555025690061 591.2555025690061 44.09379381312206 0 0 0 0 1.5994850021680094 1.3979400086720375 0 0 + [YN]AWV 3.967 + + 68 + NaN NaN 139533.5 NaN 22256 5079 27336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27338 106.06 NaN 40978 35 0 4195 0.261 + 29266 TYLPDFLDYF 10 33 647.3055464183174 NaN 0 647.3051147460938 PEAK HCD FTMS 0 0 0 27336 17054.388671875 0.35199014571567033 -11 0.11949920654296875 2 Unmodified _TYLPDFLDYF_ ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L 8.745405648335112 0.33269943387702366 1 {I|L} 1 9 11.99 0 0 0.92757 0 0 443.1715043583159 733.3222139947874 1176.4937183531033 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.92757 + + 1 + NaN NaN 88515 NaN 22257 5079 27336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27339 106.06 NaN 77819 35 0 6912.8 0.261 + 13779 KYPSPFFVF 9 40 566.297793032658 1130.5810331321159 2 566.2987060546875 MULTI HCD FTMS 0 0 0 27336 21284.919921875 0.6661091246533343 -6 0.06060791015625 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 26.995 0 0 2.3877 0 0 719.3660755841812 0 719.3660755841812 0 16.025684359364405 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.3877 + + 16 NaN NaN 90580.7 NaN 22258 5079 27336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27340 106.07 NaN 49641 35 0 7622.9 0.261 + -1 VDVCVCVCV 9 29 555.242391972141 NaN 0 554.7593994140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 3 Carbamidomethyl (C) _VDVC(Carbamidomethyl (C))VC(Carbamidomethyl (C))VC(Carbamidomethyl (C))V_ REV__ENST00000359867.7_2_22:38687065-38687464:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107002.2 NaN 22259 5079 27336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27343 106.08 NaN 25866 35 0 3262 0.411 + 29805 VELKILFRAL 10 27 601.3888696127647 NaN 0 601.3200073242188 PEAK HCD FTMS 0 0 0 27342 10645.1767578125 1 0 0 1 Unmodified _VELKILFRAL_ REV__ENSG00000122970|ENST00000242591|IFT81;REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 1.4819007175156935 0.33891598740166873 1 M 1 -1 3.4949 0 0 0.29105 0 0 636.4044959620543 430.2960604303344 1066.7005563923888 0 0 0 0 0 0 0 0 0 M 0.29105 - 2 + NaN NaN 96647.7 NaN 22260 5081 27342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27345 106.09 NaN 136120 35 0 36409 0.412 -1 0 48 585.2582747152057 1168.5019964972114 2 585.2581176757812 MULTI HCD FTMS 0 0 0 27344 34509.5234375 0.1015780495589841 16 -0.18749237060546875 1 NaN NaN 1 SA 2 -1 16.198 0 0 1.3862 0 0 0 1007.3976412220882 1007.3976412220882 10.713337517843655 0 0 0 0 0 0 0 0 SA 1.3862 - 13 + NaN NaN 120355.7 NaN 22261 5082 27344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27347 106.09 NaN 49762 35 0 9864.2 0.327 + 15096 LMEPSIWATE 10 26 588.7866167729997 NaN 0 588.7867431640625 PEAK HCD FTMS 0 0 0 27346 19493.841796875 0.39224846823858756 -10 0.09862518310546875 1 Unmodified _LMEPSIWATE_ REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 3.2813086475875832 0.33737594360511275 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93532.9 NaN 22262 5083 27346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27348 106.1 NaN 30566 35 0 4141.6 0.261 + 1794 CMYDFDLGKF 10 30 619.7633056640625 NaN 0 619.7633056640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _CMYDFDLGKF_ ENST00000479971.1_1_12:72291642-72301148:+|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94812 NaN 22263 5083 27346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27349 106.1 NaN 33982 35 0 4911.3 0.261 + 23963 RVKDIGYIF 9 22 555.8172585480323 NaN 0 555.8175659179688 PEAK HCD FTMS 0 0 0 27346 5406.12109375 0.2029911399001653 13 -0.15612030029296875 3 Unmodified _RVKDIGYIF_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 3.5964929083625545 0.27781873954207675 1 {I|L} 1 8 6.9897 0 0 0.62992 0 0 165.07941707133722 828.4420870416624 993.5215041129995 0 0 0 0 0 0 0 0 0 + {I|L} 0.62992 + + 2 + NaN NaN 93164.9 NaN 22264 5083 27346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27351 106.11 NaN 255560 35 0 69903 0.327 + 17074 LYLAFPLAF 9 38 527.8023879504774 1053.5902229677547 2 527.8023071289062 MULTI HCD FTMS 0 0 0 27350 102144.9765625 0.28839075286675636 13 -0.151153564453125 1 Unmodified _LYLAFPLAF_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 56.04830969593885 0.023109620888794903 1 A{M(Oxidation (M))|F}P{I|L}A{M(Oxidation (M))|F} 6 3 46.203 0 0 4.3853 0 0 389.23069960761876 0 389.23069960761876 0 46.202972028968716 0 0 0 2.079689690656103 0 0 0 + A{M(Oxidation (M))|F}P{I|L}A{M(Oxidation (M))|F} 4.3853 + + 25 NaN NaN 123630.3 NaN 22265 5084 27350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27352 106.11 NaN 48943 35 0 7022 0.262 + 30185 VHIADVSH 8 33 439.23030510642906 NaN 0 439.23028564453125 PEAK HCD FTMS 0 0 0 27350 31786.787109375 0.5074268083580886 13 -0.151153564453125 2 Unmodified _VHIADVSH_ ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3 0.7936320650641473 0.38822285293237185 1 W 1 8 3.4949 0 0 0.39875 0 0 456.2344006407894 231.09955774478752 687.3339583855769 0 0 0 0 0 0 0 0 0 W 0.39875 - 1 + NaN NaN 93743.4 NaN 22266 5084 27350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27354 106.12 NaN 202440 35 0 74812 0.327 + -1 VAAAGCTC 8 51 405.1674241749077 808.3202954166154 2 405.1678771972656 MULTI HCD FTMS 0 0 0 27353 114681.8125 0.05149480990765498 45 -0.4797210693359375 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 13.979 0 0 1.7294 0 0 155.09342957512337 537.1192473950358 692.2126769701592 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 5 + NaN NaN 117144.1 NaN 22267 5085 27353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27355 106.12 NaN 277010 35 0 48853 0.261 + 10027 IFADTLTLLF 10 49 577.3290095568174 1152.6434661804346 2 577.3294067382812 MULTI HCD FTMS 0 0 0 27353 22433.373046875 0.19298858482965087 -7 0.0700225830078125 2 Unmodified _IFADTLTLLF_ ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4 27.628801355627647 0.2527626205058048 1 {I|L}T{I|L}{I|L}{M(Oxidation (M))|F} 5 5 49.438 0 0 4.2891 0 0 547.2643910138687 0 547.2643910138687 0 49.438200260161125 0 0 0 1.5994850021680094 0 0 0 + {I|L}T{I|L}{I|L}{M(Oxidation (M))|F} 4.2891 + + 30 NaN NaN 130668.2 NaN 22268 5085 27353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27356 106.13 NaN 97419 35 0 8622 0.261 + 6190 FPELVLPVVL 10 36 563.3497067309568 1124.6848605287134 2 563.3499145507812 MULTI HCD FTMS 0 0 0 27353 11531.23828125 0.11185145414616181 -15 0.1628570556640625 3 Unmodified _FPELVLPVVL_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF 19.256988751693697 0.33098864134661865 1 {I|L}[VP]V{I|L} 5 5 33.456 0 0 2.9747 0 0 585.3158436505875 0 585.3158436505875 0 33.455612550363796 0 0 0 1.274227503252014 0 0 0 + {I|L}[VP]V{I|L} 2.9747 + + 9 NaN NaN 97438.8 NaN 22269 5085 27353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27357 106.13 NaN 50406 35 0 12055 0.261 + -1 YCDMERSEMTM 11 28 481.8342223440479 NaN 0 481.8349304199219 PEAK HCD FTMS 0 0 0 27353 10361.1796875 0.251691075120116 -50 0.5056228637695312 4 3 Oxidation (M) _YCDM(Oxidation (M))ERSEM(Oxidation (M))TM(Oxidation (M))_ REV__ENSG00000197852|ENST00000357260|INKA2 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88255.1 NaN 22270 5085 27353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27359 106.13 NaN 59707 35 0 9813.3 0.411 -1 0 43 599.0205688476562 NaN 0 599.0205688476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 M 1 -1 5.4846 0 0 0.45856 0 0 634.6601727077984 427.3050936334594 1061.9652663412578 0 0 0 0 0 0 0 0 0 M 0.45856 - 2 + NaN NaN 107580 NaN 22271 5086 27358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27361 106.14 NaN 45898 35 0 4767.2 0.411 -1 DYMNLLGMIF 10 39 624.786381356357 1247.5582097795138 2 624.7852172851562 MULTI HCD FTMS 0 0 0 27360 31073.0390625 0.9463375880287973 15 -0.18526458740234375 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.3684828712757339 1 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 36.026 0 0 2.8877 0 0 652.2529164044937 0 652.2529164044937 0 30.541134294324124 0 0 0 1.3807196863200843 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.8877 + + 9 NaN NaN 96021.1 NaN 22272 5087 27360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27363 106.15 NaN 379240 35 0 58156 0.327 + 17527 LYVDSLFFL 9 44 558.8025963571589 1115.5906397811177 2 558.802490234375 MULTI HCD FTMS 0 0 0 27362 183721.4375 0.09106258366126639 17 -0.2000579833984375 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.00464763827098139 1 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 79.364 0 0 7.114 7.114 94.31 0 0 0 3.089767685839533 68.39448436569874 3.089767685839533 36.88161603087728 0 2.5 0 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}V]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.114;3.808 +;- + 204 NaN NaN 135815.6 NaN 22273 5088 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27364 106.15 NaN 180380 35 0 66475 0.261 -1 SPCPRRCRC 9 30 596.268753912346 1190.522954891492 2 596.2679443359375 MULTI HCD FTMS 0 0 0 27362 27970.439453125 0.25067885755880287 -10 0.101318359375 2 2 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))PRRC(Carbamidomethyl (C))RC_ ENSG00000126243|ENST00000246529|LRFN3 0.5247636613948944 0.34703895399870666 1 G 1 -1 6.9897 0 0 0.58711 0 0 100.05301204301743 1030.4273694549138 1130.4803814979311 0 0 0 0 0 0 0 0 0 G 0.58711 - 3 + NaN NaN 111829.8 NaN 22274 5088 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27365 106.16 NaN 107960 35 0 12538 0.261 + 13780 KYPSPFFVF 9 39 566.297793032658 1130.5810331321159 2 566.2972412109375 MULTI HCD FTMS 0 0 0 27362 14851.9794921875 0.46479099264747453 3 -0.0362548828125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 1 V{M(Oxidation (M))|F} 2 7 27.519 0 0 2.434 0 0 866.432420799025 0 866.432420799025 0 17.0609971201948 0 0 0 0.805462187404089 0 0 0 + V{M(Oxidation (M))|F} 2.434 + + 20 NaN NaN 99035 NaN 22275 5088 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27366 106.16 NaN 38492 35 0 4643.1 0.261 + -1 LAEPEVDVLCV 11 27 622.3159790039062 NaN 0 622.3159790039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _LAEPEVDVLC(Carbamidomethyl (C))V_ REV__ENSG00000161647|ENST00000398389|MPP3 5.731851221503515 0.3258605322397891 1 {I|L} 1 -1 11.99 0 0 0.96487 0 0 852.4273358380875 274.08246790103755 1126.5098037391251 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 2 + NaN NaN 87958.1 NaN 22276 5088 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27368 106.16 NaN 269260 35 0 43130 0.327 + 17993 MLEDWIKPE 9 58 580.7846812783993 NaN 0 580.803955078125 PEAK HCD FTMS 0 0 0 27367 7864.8857421875 0.16324787014315045 15 -0.177001953125 1 Unmodified _MLEDWIKPE_ ENSG00000138792|ENST00000265162|ENPEP 14.838274106304384 0.2220448417561729 1 PE{I|L}Y 4 7 29.24 0 0 2.5217 0 0 147.03099587474827 507.2584979482246 654.2894938229729 0 0 0 0 0 0 0 0.7302046884880937 0 PE{I|L}Y 2.5217 - 59 + NaN NaN 139972.1 NaN 22277 5089 27367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27369 106.17 NaN 233200 35 0 45966 0.261 + 14928 LLEKIKKMKV 10 40 615.4039911383496 NaN 0 615.4049682617188 PEAK HCD FTMS 0 0 0 27367 51423.91796875 3.420694118999266E-06 -151 1.4934768676757812 2 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 1.4819007175156935 0.33891598740166873 1 AWV 3 -1 13.188 0 0 1.0732 0 0 278.3332559771084 591.2581368495364 869.5913928266448 0 0 0 0 0 0 0 0 0 AWV 1.0732 - 38 + NaN NaN 124173.5 NaN 22278 5089 27367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27370 106.17 NaN 64287 35 0 7684.8 0.264 + -1 AAHPHLGE 8 43 437.21462719720097 NaN 0 437.21533203125 PEAK HCD FTMS 0 0 0 27367 23876.41796875 0.4182018811261962 48 -0.5050048828125 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AAHPHLGE_ REV__ENST00000327979.6_1_20:49225168-49225207:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89813.1 NaN 22279 5089 27367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27372 106.18 NaN 1192700 35 0 200830 0.37 + 17546 LYVFYSSFI 9 66 569.7951803469078 NaN 0 569.81298828125 PEAK HCD FTMS 0 0 0 27371 18503.9375 0.39067043948494595 -1 0.013031005859375 1 Unmodified _LYVFYSSFI_ REV__ENSG00000053918|ENST00000155840|KCNQ1;REV__nc|ENSG00000053918|P51787-2|KCNQ1 21.74664581756881 0.17567436591797916 1 {I|L}{M(Oxidation (M))|F}PYE 5 -1 25.815 0 0 2.2693 0 0 131.05940176904477 354.18146692447505 485.2408686935198 0 0 0 0 0 0 0 0.3252574989159953 0 {I|L}{M(Oxidation (M))|F}PYE 2.2693 - 81 + NaN NaN 403909.5 NaN 22280 5090 27371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27375 106.19 NaN 61873 35 0 4463.5 0.411 + 29267 TYLPDFLDYF 10 50 647.3055464183174 NaN 0 647.306396484375 PEAK HCD FTMS 0 0 0 27374 48451.32421875 1 0 0 1 Unmodified _TYLPDFLDYF_ ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L 51.629811660486645 0.07124847984097704 1 YD{I|L} 3 7 25.93 0 0 2.006 0 0 165.07793901532278 733.31959873998 898.3975377553029 0 0 0 0 0 1.274227503252014 0 0 0 YD{I|L} 2.006 - 31 + NaN NaN 97907.2 NaN 22281 5092 27374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27377 106.2 NaN 193110 35 0 33969 0.327 -1 0 46 547.3171722230232 1092.6197915128464 2 547.3173828125 MULTI HCD FTMS 0 0 0 27376 39583.3984375 0.36192676252566935 -1 0.007415771484375 1 NaN NaN 1 {I|L}PDV{M(Oxidation (M))|F} 5 -1 46.81 0 0 4.2842 0 0 0 518.2963350885374 518.2963350885374 35.57319389984244 0 0 0 0 0.6989700043360187 0 0.4247425010840047 0 {I|L}PDV{M(Oxidation (M))|F} 4.2842 - 41 + NaN NaN 113830.7 NaN 22282 5093 27376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27378 106.2 NaN 49561 35 0 5903.7 0.261 + -1 LHCVHFLLA 9 33 555.3012859579939 NaN 0 555.3008422851562 PEAK HCD FTMS 0 0 0 27376 5123.9501953125 0.24265346536485022 1 -0.01937103271484375 2 Carbamidomethyl (C) _LHC(Carbamidomethyl (C))VHFLLA_ REV__nc|ENSG00000011021|P51797-2|CLCN6;REV__nc|ENSG00000011021|P51797-4|CLCN6 2.302733041254933 0.2840881193086663 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90113.1 NaN 22283 5093 27376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27379 106.21 NaN 93459 35 0 22959 0.261 + 26164 SPMDIFDMF 9 30 551.732882120729 1101.4512113082578 2 551.7319946289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SPMDIFDMF_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 15.847184025352803 0.2234401846867398 1 M{M(Oxidation (M))|F} 2 7 22.959 0 0 2.0844 0 0 805.3308632631391 0 805.3308632631391 0 12.501225267834 0 0 0 0.5 0 0 0 + M{M(Oxidation (M))|F} 2.0844 + + 6 + NaN NaN 92828.5 NaN 22284 5093 27376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27380 106.21 NaN 110850 35 0 29127 0.261 + -1 YLRMGHRK 8 20 538.7934124704748 1075.5722720077495 2 538.792724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YLRM(Oxidation (M))GHRK_ REV__tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99507.1 NaN 22285 5093 27376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27381 106.21 NaN 30844 35 0 4111.3 0.261 + 9726 HWRFSHWR 8 25 606.30029296875 NaN 0 606.30029296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _HWRFSHWR_ REV__ENST00000378797.6_2_13:46916808-46917036:-|nuORF 0.7936320650641473 0.38822285293237185 1 C(Carbamidomethyl (C)) 1 -1 3.0989 0 0 0.25599 0 0 730.8775642560562 316.6662691705688 1047.543833426625 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.25599 - 1 + NaN NaN 87220.1 NaN 22286 5093 27376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27383 106.22 NaN 232600 35 0 32551 0.327 -1 0 51 580.8039282838145 1159.5933036344288 2 580.8040771484375 MULTI HCD FTMS 0 0 0 27382 216381.765625 0.6471285409997413 -6 0.06986236572265625 1 NaN NaN 1 PY{I|L}EPE 6 -1 64.201 0 0 5.5365 0 0 413.22862441230626 0 413.22862441230626 0 41.29370928348408 0 0 0 1.805462187404089 0 0.3494850021680094 0 PY{I|L}EPE 5.5365 - 86 NaN NaN 116970.1 NaN 22287 5094 27382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27384 106.22 NaN 105460 35 0 58340 0.261 + 30269 VKILDFPAL 9 39 508.3113959725142 NaN 0 508.3114318847656 PEAK HCD FTMS 0 0 0 27382 48152.15234375 0.7092130402283667 3 -0.0403289794921875 2 Unmodified _VKILDFPAL_ REV__ENSG00000162241|ENST00000398802|SLC25A45;REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF;REV__nc|ENSG00000162241|Q8N413-2|SLC25A45;REV__nc|ENSG00000162241|Q8N413-3|SLC25A45;REV__nc|ENSG00000162241|Q8N413-4|SLC25A45 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101382 NaN 22288 5094 27382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27385 106.23 NaN 115650 35 0 20758 0.261 + 13526 KYPENFFLL 9 27 585.8135385759193 1169.6125242186386 2 585.8141479492188 MULTI HCD FTMS 0 0 0 27382 23970.5703125 0.19848176858925565 -87 0.85931396484375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3616810529312 0 778.3616810529312 0 13.239087409443187 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 7 NaN NaN 107730.2 NaN 22289 5094 27382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27387 106.23 NaN 99097 35 0 24709 0.327 -1 LIMVMVYFE 9 35 588.7866167729997 NaN 0 588.7861938476562 PEAK HCD FTMS 0 0 0 27386 12097.041015625 0.243412553463881 1 -0.01959991455078125 1 2 Oxidation (M) _LIM(Oxidation (M))VM(Oxidation (M))VYFE_ nc|ENSG00000136603|P12757-2|SKIL 4.3292370932331545 0.2742679634796037 1 {I|L}{I|L} 2 -1 7.9588 0 0 0.67702 0 0 260.07676030205545 686.2890719049436 946.3658322069991 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.67702 + + 7 + NaN NaN 114302.8 NaN 22290 5095 27386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27388 106.24 NaN 89580 35 0 22363 0.261 -1 0 28 585.2582747152057 1168.5019964972114 2 585.2586669921875 MULTI HCD FTMS 0 0 0 27386 14077.4365234375 0.04143663552558113 29 -0.30841064453125 2 NaN NaN 1 {I|L} 1 -1 5.4846 0 0 0.46937 0 0 129.98534718256138 922.4127291315061 1052.3980763140676 0 0 0 0 0 0 0 0 0 {I|L} 0.46937 - 4 + NaN NaN 98243.8 NaN 22291 5095 27386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27389 106.24 NaN 311280 35 0 36830 0.261 + 26247 SQEETGMPNKA 11 42 596.268753912346 1190.522954891492 2 596.7700805664062 MULTI HCD FTMS 0 0 0 27386 9019.5625 0.12238950555765161 -5 0.053741455078125 3 Unmodified _SQEETGMPNKA_ ENSG00000175556|ENST00000371628|LONRF3;ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-2|LONRF3;nc|ENSG00000175556|Q496Y0-3|LONRF3 2.735195868890462 0.4069250265843076 1 G 1 10 6.9897 0 0 0.58711 0 0 100.05246672631922 1030.4259249543816 1130.4783916807007 0 0 0 0 0 0 0 0 0 + G 0.58711 + + 6 + NaN NaN 121169.4 NaN 22292 5095 27386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27390 106.24 NaN 66238 35 0 13348 0.261 + 33662 YKFTLPGYY 9 26 576.2932920928303 NaN 0 576.2930297851562 PEAK HCD FTMS 0 0 0 27386 29466.544921875 0.6182692313208928 -27 0.294036865234375 4 Unmodified _YKFTLPGYY_ REV__ENSG00000230301|ENST00000615035|OR5H6;REV__nc|ENSG00000230301|Q8NGV6|OR5H6 4.3292370932331545 0.2742679634796037 1 Y 1 -1 3.9794 0 0 0.34586 0 0 430.1916124065604 554.3076265924436 984.4992389990041 0 0 0 0 0 0 0 0 0 Y 0.34586 + + 2 + NaN NaN 87193.7 NaN 22293 5095 27386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27391 106.25 NaN 93131 35 0 8810 0.261 -1 LCILLVLL 8 42 499.8195109540038 NaN 0 499.8197021484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 6.354104778181461 0.38822285293237185 1 {I|L} 1 -1 11.99 0 0 1.2018 0 0 131.09539814721614 750.4239611143765 881.5193592615926 0 0 0 0 0 0.5 0 0 0 {I|L} 1.2018 + + 1 + NaN NaN 103500 NaN 22294 5095 27386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27393 106.25 NaN 108650 35 0 19202 0.411 + 23102 RESPVSSPSW 10 57 566.2726606412167 NaN 0 566.2727661132812 PEAK HCD FTMS 0 0 0 27392 32151.89453125 0.8882159580893475 -4 0.05936431884765625 1 Unmodified _RESPVSSPSW_ REV__ENSG00000178395|ENST00000366875|CCDC185 8.745405648335112 0.33269943387702366 1 S 1 -1 11.664 0 0 1.0317 0 0 839.4091690834115 201.06685815982658 1040.4760272432381 0 0 0 0 0 0.3807196863200844 0 0.3252574989159953 0 S 1.0317 + + 18 + NaN NaN 123346.2 NaN 22295 5096 27392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27395 106.26 NaN 138850 35 0 48054 0.327 + -1 VAAAGCTC 8 28 405.1674241749077 808.3202954166154 2 405.1678161621094 MULTI HCD FTMS 0 0 0 27394 106537.9921875 0.047838044551646274 57 -0.5894851684570312 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 13.979 0 0 1.7294 0 0 155.09379065793615 537.1204908595149 692.2142815174511 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 5 + NaN NaN 98873.2 NaN 22296 5097 27394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27396 106.26 NaN 195010 35 0 17929 0.261 + 6191 FPELVLPVVL 10 40 563.3497067309568 1124.6848605287134 2 563.349609375 MULTI HCD FTMS 0 0 0 27394 47661.1484375 0.4623067036676099 -3 0.0403289794921875 2 Unmodified _FPELVLPVVL_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF 19.256988751693697 0.33098864134661865 1 {I|L}[VP]V{I|L} 5 5 36.466 0 0 3.2423 0 0 585.3156264966456 0 585.3156264966456 0 15.496812376923046 0 0 0 1.4247425010840047 0 0 0 + {I|L}[VP]V{I|L} 3.2423 + + 21 NaN NaN 108866.5 NaN 22297 5097 27394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27397 106.27 NaN 65460 35 0 9301 0.261 + 13527 KYPENFFLL 9 25 585.8135385759193 1169.6125242186386 2 585.812255859375 MULTI HCD FTMS 0 0 0 27394 35625.87109375 0.2949903072824663 -84 0.8467788696289062 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 5.296884461304476 0.3108627248283497 1 {I|L}{I|L} 2 7 20.969 0 0 1.7928 0 0 925.4319404838853 0 925.4319404838853 0 15.484550065040281 0 0 0 0 0 0 0 + {I|L}{I|L} 1.7928 + + 5 NaN NaN 95629.3 NaN 22298 5097 27394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27398 106.27 NaN 41263 35 0 8039.8 0.261 + 29806 VELKILFRAL 10 25 601.3882326769386 NaN 0 601.387939453125 PEAK HCD FTMS 0 0 0 27394 13842.8564453125 0.6205434956574911 -4 0.05970001220703125 4 Unmodified _VELKILFRAL_ REV__ENSG00000122970|ENST00000242591|IFT81;REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 1.4819007175156935 0.33891598740166873 1 M 1 -1 5.4846 0 0 0.45676 0 0 636.4023065630585 430.29596887760005 1066.6982754406586 0 0 0 0 0 0 0 0 0 M 0.45676 - 1 + NaN NaN 88426.3 NaN 22299 5097 27394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27400 106.28 NaN 312390 35 0 46282 0.327 + 17528 LYVDSLFFL 9 42 558.8025963571589 1115.5906397811177 2 558.802734375 MULTI HCD FTMS 0 0 0 27399 166524.703125 0.0825389236897728 27 -0.2719879150390625 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.00464763827098139 1 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 82.63 0 0 7.4068 7.4068 96.026 0 0 0 4.762036441594191 71.66054693457546 4.762036441594191 82.62964706465603 0 2.3494850021680094 0 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.4068 + + 191 NaN NaN 133239 NaN 22300 5098 27399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27401 106.28 NaN 44853 35 0 6153.7 0.261 + 20728 PFYDMIHQAQ 10 21 625.2870255183992 NaN 0 625.2876586914062 PEAK HCD FTMS 0 0 0 27399 10494.3857421875 0.4713886990247754 1 -0.00970458984375 2 Unmodified _PFYDMIHQAQ_ CON__P17697 1.4819007175156935 0.33891598740166873 1 {I|L} 1 9 6.9897 0 0 0.55982 0 0 653.2553121678546 479.1965426080688 1132.4518547759235 0 0 0 0 0 0 0 0 0 + {I|L} 0.55982 + + 10 + NaN NaN 89862.8 NaN 22301 5098 27399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27403 106.28 NaN 388660 35 0 61745 0.327 -1 0 61 580.8039282838145 1159.5933036344288 2 580.8038330078125 MULTI HCD FTMS 0 0 0 27402 142633.953125 0.42657245963493706 -1 0.00970458984375 1 NaN NaN 1 {I|L}ME{I|L}YP 6 -1 76.697 0 0 6.6141 0 0 0 410.20527063541255 410.20527063541255 46.26414431105377 0 0 0 0 1.805462187404089 1.6989700043360187 0.7742275032520141 0 {I|L}ME{I|L}YP 6.6141 - 222 + NaN NaN 147783.4 NaN 22302 5099 27402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27404 106.29 NaN 162860 35 0 24281 0.261 -1 SRCIPEIDDS 10 35 596.268753912346 1190.522954891492 2 596.2686767578125 MULTI HCD FTMS 0 0 0 27402 27112.232421875 0.2429873674589344 1 -0.01607513427734375 2 Carbamidomethyl (C) _SRC(Carbamidomethyl (C))IPEIDDS_ ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2 1.3295316138638542 0.46826628246186464 1 G 1 -1 6.9897 0 0 0.58711 0 0 100.05302955418831 1030.4265754874789 1130.4796050416671 0 0 0 0 0 0 0 0 0 G 0.58711 - 4 + NaN NaN 109007.5 NaN 22303 5099 27402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27405 106.29 NaN 134210 35 0 26574 0.261 + 10028 IFADTLTLLF 10 40 577.3290095568174 1152.6434661804346 2 577.3292846679688 MULTI HCD FTMS 0 0 0 27402 16836.69140625 0.1448417605732439 7 -0.0732421875 3 Unmodified _IFADTLTLLF_ ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4 13.042465956692817 0.38911719078024076 1 T{I|L}{I|L}{M(Oxidation (M))|F} 4 6 39.993 0 0 3.4697 0 0 660.3483753888687 0 660.3483753888687 0 38.73376226923302 0 0 0 0.805462187404089 0 0 0 + T{I|L}{I|L}{M(Oxidation (M))|F} 3.4697 + + 30 NaN NaN 106241.7 NaN 22304 5099 27402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27406 106.3 NaN 63045 35 0 5648.5 0.261 -1 DYMNLLGMIF 10 26 624.7858872033175 NaN 0 624.785888671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.31912431859025153 1 {I|L} 1 -1 15.797 0 0 1.2662 0 0 652.2536458892538 479.1944674127563 1131.4481133020101 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L} 1.2662 + + 10 + NaN NaN 101400.4 NaN 22305 5099 27402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27408 106.3 NaN 58627 35 0 11875 0.327 + 23428 RLNKLKLI 8 34 499.3477041043548 NaN 0 499.34808349609375 PEAK HCD FTMS 0 0 0 27407 18420.48828125 0.5636897538865515 14 -0.13117218017578125 1 Unmodified _RLNKLKLI_ REV__ENSG00000139915|ENST00000399232|MDGA2;REV__MDGA2|p.G845Dfs*4|1|0.65|ENSG00000139915|chr14:46873444-46873444|C/-|frameshift_variant;REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant;REV__nc|ENSG00000139915|Q7Z553|MDGA2 0.7936320650641473 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.7013 0 0 130.1512054725784 750.4201754205686 880.5713808931471 0 0 0 0 0 0 0 0 0 {I|L} 0.7013 + + 2 + NaN NaN 83672.6 NaN 22306 5100 27407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27409 106.31 NaN 43435 35 0 5434.8 0.261 -1 0 31 599.0212262959441 NaN 0 599.0205078125 PEAK HCD FTMS 0 0 0 27407 14998.919921875 1 0 0 2 NaN NaN 1 M 1 -1 6.9897 0 0 0.58441 0 0 634.6590840223248 427.30430017642817 1061.963384198753 0 0 0 0 0 0 0 0 0 M 0.58441 - 2 + NaN NaN 98446.8 NaN 22307 5100 27407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27411 106.31 NaN 3095800 35 0 558640 0.327 + 6194 FPELYPFLL 9 55 569.813040424913 1137.6115279166258 2 569.813232421875 MULTI HCD FTMS 0 0 0 27410 1197605.625 0.38672805816587424 1 -0.01604461669921875 1 Unmodified _FPELYPFLL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 57.47134341890925 0.0211188941628804 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 65.851 0 0 5.7886 5.7886 83.1 0 0 0 0.7918124604762511 16.478174818886373 0.7918124604762511 0.7918124604762511 0 1.774227503252014 0 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PEYP{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}YP{M(Oxidation (M))|F}{I|L}{I|L};[EP]{I|L}{M(Oxidation (M))|F}YP{M(Oxidation (M))|F}{I|L}{I|L};[EP]{M(Oxidation (M))|F}{I|L}YP{M(Oxidation (M))|F}{I|L}{I|L} 5.7886;5.719;5.3692;5.2593;5.1045 -;-;+;-;- + 211 NaN NaN 554650.9 NaN 22308 5101 27410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27412 106.31 NaN 44816 35 0 6377.5 0.261 + 29671 VASMAFSKFLF 11 29 624.3270406003311 1246.639528267462 2 624.3270874023438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VASMAFSKFLF_ REV__ENSG00000196235|ENST00000432763|SUPT5H;REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF;REV__nc|ENSG00000196235|O00267-2|SUPT5H;REV__SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant 2.498486711656943 0.4079631525365919 1 {I|L} 1 -1 3.0989 0 0 0.24858 0 0 651.3346709449996 479.1969393365844 1130.531610281584 0 0 0 0 0 0 0 0 0 {I|L} 0.24858 + + 3 + NaN NaN 92051.3 NaN 22309 5101 27410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27413 106.32 NaN 42035 35 0 4997.1 0.261 + 29268 TYLPDFLDYF 10 29 647.3055464183174 NaN 0 647.30615234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TYLPDFLDYF_ ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L 16.149105407346934 0.31182886977857566 1 {I|L} 1 9 15.242 0 0 1.1792 0 0 443.1701005497221 733.3245943658811 1176.4946949156033 0 0 0 0 0 0.8252574989159953 0 0 0 + {I|L} 1.1792 + + 5 + NaN NaN 91217.8 NaN 22310 5101 27410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27414 106.32 NaN 36299 35 0 4269.5 0.261 + -1 RLYLCRDEL 9 25 619.3214979504996 NaN 0 619.3218994140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _RLYLC(Carbamidomethyl (C))RDEL_ REV__ENSG00000257218|ENST00000551765|GATC 3.2813086475875832 0.27934607848455584 1 ED 2 -1 10.969 0 0 0.88702 0 0 131.09599892846614 858.4428194635374 989.5388183920036 0 0 0 0 0 0 0 0 0 ED 0.88702 - 3 + NaN NaN 97356.2 NaN 22311 5101 27410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27416 106.33 NaN 239840 35 0 40778 0.411 -1 0 83 476.62392989085254 1426.8499602727577 3 476.62384033203125 MULTI HCD FTMS 0 0 0 27415 76927.71875 0.20183440128403335 -18 0.21872711181640625 1 NaN NaN 1 P 1 -1 3.9794 0 0 0.27889 0 0 748.4460068483197 578.3142794244749 1326.7602862727945 0 0 0 0 0 0 0 0 0 P 0.27889 - 11 + NaN NaN 151411.4 NaN 22312 5102 27415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27418 106.33 NaN 147350 35 0 26331 0.411 + 26165 SPMDIFDMF 9 57 551.732882120729 1101.4512113082578 2 551.7330932617188 MULTI HCD FTMS 0 0 0 27417 66024.3203125 0.9442806975672834 3 -0.02371978759765625 1 Unmodified _SPMDIFDMF_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 46.020951573049366 0.037705236580089195 1 [MD]PS{I|L}{M(Oxidation (M))|F}DM{M(Oxidation (M))|F} 9 4 [MD]PS + + 45.795 2.0514 0.47689 4.1577 4.1577 60.286 0 0 0 0 40.31000522516577 0 0 0 1.8494850021680094 0 0.28872548999643577 0 [MD]PS{I|L}{M(Oxidation (M))|F}DM{M(Oxidation (M))|F} 4.1577 - 97 + NaN NaN 125509.8 NaN 22313 5103 27417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27421 106.35 NaN 204550 35 0 21545 0.327 + -1 ITCLDTKQF 9 38 563.284511620676 NaN 0 563.3030395507812 PEAK HCD FTMS 0 0 0 27420 8538.59765625 0.6986746433700645 1 -0.00916290283203125 1 Carbamidomethyl (C) _ITC(Carbamidomethyl (C))LDTKQF_ REV__ENST00000343280.8_1_19:57984308-57984569:-|nuORF 11.640296217721598 0.23883959125015683 1 QV{M(Oxidation (M))|F} 3 -1 14.693 0 0 1.3065 0 0 165.04191823294894 582.2924711384177 747.3343893713666 0 0 0 0 0 0 0 0 0 QV{M(Oxidation (M))|F} 1.3065 - 28 + NaN NaN 124429.5 NaN 22314 5105 27420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27422 106.35 NaN 101750 35 0 14562 0.261 -1 0 44 566.2976747598004 1130.5807965864008 2 566.2977294921875 MULTI HCD FTMS 0 0 0 27420 27635.94921875 0.2941919364131852 -76 0.782440185546875 2 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 23.711 0 0 2.0973 0 0 866.4321382272467 0 866.4321382272467 0 13.253800256993953 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.0973 - 8 NaN NaN 113006.7 NaN 22315 5105 27420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27424 106.36 NaN 75477 35 0 18317 0.327 + 14770 LIDDALVSDSE 11 37 588.7864873599411 NaN 0 588.785888671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LIDDALVSDSE_ REV__ENSG00000164715|ENST00000297293|LMTK2 4.897010918128616 0.3282287337590871 1 {I|L} 1 -1 6.9897 0 0 0.59459 0 0 113.08442833203783 946.3687747085305 1059.4532030405683 0 0 0 0 0 0 0 0 0 {I|L} 0.59459 + + 5 + NaN NaN 103431.4 NaN 22316 5106 27423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27425 106.36 NaN 74439 35 0 11140 0.261 + 13528 KYPENFFLL 9 40 585.8135385759193 1169.6125242186386 2 585.8138427734375 MULTI HCD FTMS 0 0 0 27423 24893.201171875 0.206121361737704 -75 0.777313232421875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 2.9952420565917617 0.3283108881486655 1 WYK{I|L} 4 7 24.702 0 0 2.112 0 0 561.3075428693375 0 561.3075428693375 0 20.723010016729653 0 0 0 0 0 0 0 WYK{I|L} 2.112 - 17 NaN NaN 101534 NaN 22317 5106 27423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27427 106.37 NaN 27729 35 0 5271.3 0.411 + -1 LAEPEVDVLCV 11 29 622.3178100585938 NaN 0 622.3178100585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _LAEPEVDVLC(Carbamidomethyl (C))V_ REV__ENSG00000161647|ENST00000398389|MPP3 8.745405648335112 0.31731194618894887 1 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4317292951188 274.0822847955688 1126.5140140906876 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 3 + NaN NaN 94226.8 NaN 22318 5107 27426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27430 106.38 NaN 195390 35 0 17207 0.411 + 21179 PPTRPRRRRRP 11 93 482.2994318492407 1443.8764661479222 3 482.2991943359375 MULTI HCD FTMS 0 0 0 27429 91811.234375 0.4297341045738279 -12 0.123016357421875 1 Unmodified _PPTRPRRRRRP_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 1.3296431237094175 0.4130893034510334 1 A 1 -1 3.9794 0 0 0.27561 0 0 765.472287709976 604.3550509088499 1369.8273386188257 0 0 0 0 0 0 0 0 0 A 0.27561 - 9 + NaN NaN 141341.9 NaN 22319 5109 27429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27432 106.39 NaN 114340 35 0 36896 0.327 -1 MCSGQAGV 8 34 405.1674241749077 808.3202954166154 2 405.1677551269531 MULTI HCD FTMS 0 0 0 27431 134126.671875 0.060226005511985946 70 -0.7007064819335938 1 Carbamidomethyl (C) _MC(Carbamidomethyl (C))SGQAGV_ ENST00000401738.3_1_2:42530513-42531625:+|nuORF 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 8.8515 0 0 1.0951 0 0 155.09340311491763 537.1200655572874 692.213468672205 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.0951 - 5 + NaN NaN 95380.7 NaN 22320 5110 27431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27433 106.39 NaN 110380 35 0 13643 0.261 -1 YQALLETMF 9 38 566.2726606412167 NaN 0 566.2725219726562 PEAK HCD FTMS 0 0 0 27431 17853.6484375 0.49321807263616707 10 -0.10979461669921875 2 Oxidation (M) _YQALLETM(Oxidation (M))F_ ENST00000491680.6_1_2:30670231-30775468:+|nuORF 7.289230182591677 0.2599242500475609 1 S 1 -1 5.4846 0 0 0.48513 0 0 203.0827225502083 837.3895968072874 1040.4723193574957 0 0 0 0 0 0 0 0 0 S 0.48513 - 5 + NaN NaN 98858.5 NaN 22321 5110 27431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27435 106.4 NaN 137030 35 0 18355 0.411 + 17533 LYVDSLFFL 9 48 558.8025123327926 NaN 0 558.8026733398438 PEAK HCD FTMS 0 0 0 27434 114375.7734375 1 0 0 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.0012370366288973111 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}SDV 6 8 56.336 0 0 5.0499 0 0 131.09441359318333 273.12384973697505 404.2182633301584 0 0 0 0 0 2.305462187404089 0 1.2302046884880937 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}SDV 5.0499 - 144 + NaN NaN 143523.6 NaN 22322 5111 27434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27437 106.41 NaN 303260 35 0 46581 0.327 -1 0 56 580.8039282838145 1159.5933036344288 2 580.8038330078125 MULTI HCD FTMS 0 0 0 27436 146511.328125 0.43816844610547623 12 -0.1337432861328125 1 NaN NaN 1 {I|L}ME{I|L}Y 5 -1 69.725 0 0 6.0129 0 0 0 507.25824343334386 507.25824343334386 48.75569708000178 0 0 0 0 1.3494850021680094 1.6989700043360187 0.7302046884880937 0 {I|L}ME{I|L}Y 6.0129 - 119 + NaN NaN 135152.8 NaN 22323 5112 27436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27438 106.41 NaN 56402 35 0 5351.2 0.261 + 27401 SYTRYGLSW 9 36 566.7756686396559 1131.5367843461117 2 567.27783203125 MULTI HCD FTMS 0 0 0 27436 23154.193359375 0.676956160796851 6 -0.0667877197265625 2 Unmodified _SYTRYGLSW_ REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 9.38312468134398 0.279288223203164 1 SW 2 -1 27.206 0 0 2.4044 0 0 840.4151545627118 0 840.4151545627118 0 27.206225184280797 0 0 0 0.9247425010840047 0 0 0 SW 2.4044 + + 12 + NaN NaN 85860.7 NaN 22324 5112 27436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27439 106.41 NaN 57275 35 0 7122 0.261 -1 LCILLVLL 8 40 499.8195109540038 NaN 0 499.8199768066406 PEAK HCD FTMS 0 0 0 27436 4213.51904296875 0.13232057763885133 3 -0.03871917724609375 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 6.354104778181461 0.38822285293237185 1 {I|L} 1 -1 11.99 0 0 1.2018 0 0 131.09429373122185 750.4226915753194 881.5169853065413 0 0 0 0 0 0.5 0 0 0 {I|L} 1.2018 + + 3 + NaN NaN 103309.9 NaN 22325 5112 27436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27441 106.42 NaN 64874 35 0 5351.3 0.327 + 23516 RNHLGRKLRRR 11 45 487.97488322378456 1460.9028202715538 3 487.9748229980469 MULTI HCD FTMS 0 0 0 27440 56212.46484375 0.8369197189561528 -1 0.012786865234375 1 Unmodified _RNHLGRKLRRR_ ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1 0.5059551277355931 0.4167017191902429 1 C 1 11 6.9897 0 0 0.47845 0 0 871.0419326756538 483.8220308893188 1354.8639635649727 0 0 0 0 0 0 0 0 0 C 0.47845 - 2 + NaN NaN 95547.8 NaN 22326 5113 27440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27442 106.42 NaN 36397 35 0 4994.2 0.261 -1 KCRYVIMH 8 25 533.2724742019284 NaN 0 533.6920166015625 PEAK HCD FTMS 0 0 0 27440 8269.8564453125 1 0 0 2 Oxidation (M) _KCRYVIM(Oxidation (M))H_ ENST00000300952.6_1_19:1257468-1257951:+|nuORF 0.7936320650641473 0.38822285293237185 1 Y 1 -1 1.9897 0 0 0.18691 0 0 342.1274546521004 556.3074434869749 898.4348981390754 0 0 0 0 0 0 0 0 0 Y 0.18691 + + 1 + NaN NaN 88581.4 NaN 22327 5113 27440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27443 106.43 NaN 112580 35 0 12487 0.261 + -1 VSHSETEKMQ 10 31 596.268753912346 1190.522954891492 2 597.2731323242188 MULTI HCD FTMS 0 0 0 27440 16659.53125 0.5083329201359356 2 -0.02593231201171875 3 Oxidation (M) _VSHSETEKM(Oxidation (M))Q_ REV__ENSG00000183137|ENST00000517392|CEP57L1;REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1 1.1933415558491238 0.46898715808974617 1 VG 2 -1 20.969 0 0 1.7613 0 0 0 1031.4251566345995 1031.4251566345995 15.484550065040281 0 0 0 0 0 0 0 0 VG 1.7613 - 3 + NaN NaN 101221.9 NaN 22328 5113 27440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27445 106.43 NaN 1623900 35 0 304360 0.327 + 6195 FPELYPFLL 9 48 569.813040424913 1137.6115279166258 2 569.81298828125 MULTI HCD FTMS 0 0 0 27444 1380846.375 0.4458997403499475 14 -0.1447296142578125 1 Unmodified _FPELYPFLL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 42.09456458481378 0.05572955244001856 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 60.596 0 0 5.3266 5.3266 91.949 0 0 0 3.65279269351241 53.605925060534574 3.65279269351241 60.59562510389476 0 1.774227503252014 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 5.3266 - 75 NaN NaN 327910.2 NaN 22329 5114 27444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27446 106.44 NaN 92057 35 0 24072 0.261 + 15097 LMEPSIWATE 10 33 588.7864873599411 NaN 0 588.787109375 PEAK HCD FTMS 0 0 0 27444 34349.01171875 0.6471447346516912 -6 0.0570068359375 2 Unmodified _LMEPSIWATE_ REV__tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1 9.38312468134398 0.33215363477037435 1 ME 2 -1 10.445 0 0 0.88854 0 0 113.0854533199127 799.3706759088499 912.4561292287626 0 0 0 0 0 0 0 0.4247425010840047 0 ME 0.88854 + + 6 + NaN NaN 125232.8 NaN 22330 5114 27444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27447 106.44 NaN 26704 35 0 3746.8 0.261 + 8682 HFLRRVIFTT 10 26 645.378107880178 NaN 0 645.3775634765625 PEAK HCD FTMS 0 0 0 27444 8324.1220703125 0.607315947964303 -5 0.050018310546875 3 Unmodified _HFLRRVIFTT_ REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000172071|ENST00000303236|EIF2AK3 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98856.4 NaN 22331 5114 27444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27449 106.44 NaN 60742 35 0 4852.9 0.411 + -1 FPTPLVSCAGV 11 45 574.2938174766275 1146.573082020055 2 574.29443359375 MULTI HCD FTMS 0 0 0 27448 11487.3291015625 0.15584738187024091 -12 0.11072540283203125 1 Carbamidomethyl (C) _FPTPLVSC(Carbamidomethyl (C))AGV_ REV__ENST00000432854.5_1_7:44100999-44101362:+|nuORF 11.494710602746466 0.35692862141139436 1 P{I|L}MC{I|L}PE 7 -1 33.9 0 0 2.9567 0 0 345.16917617011876 0 345.16917617011876 0 12.931372718143663 0 0 0 0.3935078169319297 0 0 0 P{I|L}MC{I|L}PE 2.9567 - 29 NaN NaN 114049.6 NaN 22332 5115 27448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27451 106.45 NaN 498110 35 0 47324 0.412 -1 0 96 476.62392989085254 1426.8499602727577 3 476.6237487792969 MULTI HCD FTMS 0 0 0 27450 253924 0.6662175785844018 -4 0.04650115966796875 1 NaN NaN 1 {I|L} 1 -1 6.9897 0 0 0.48987 0 0 252.27767229350894 1058.4684712527535 1310.7461435462624 0 0 0 0 0 0 0 0 0 {I|L} 0.48987 - 29 + NaN NaN 243785 NaN 22333 5116 27450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27453 106.46 NaN 90591 35 0 25426 0.327 + 32450 WDNRDYSF 8 42 551.732882120729 1101.4512113082578 2 551.7332153320312 MULTI HCD FTMS 0 0 0 27452 8937.205078125 0.1278200245838198 17 -0.17279052734375 1 Unmodified _WDNRDYSF_ ENSG00000105464|ENST00000263269|GRIN2D 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F} 1 7 19.604 0 0 1.7798 0 0 936.3721993227094 0 936.3721993227094 0 19.604093769761874 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7798 + + 1 + NaN NaN 90737.9 NaN 22334 5117 27452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27454 106.46 NaN 77684 35 0 7392.6 0.261 + -1 GFSALLCLHD 10 31 566.7749447470565 NaN 0 566.7747192382812 PEAK HCD FTMS 0 0 0 27452 20366.171875 0.6291134915675705 -3 0.0283050537109375 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 1 S 1 -1 14.292 0 0 1.263 0 0 204.09082553657294 837.3916834055909 1041.4825089421638 0 0 0 0 0 0.8807196863200843 0 0 0 S 1.263 + + 5 + NaN NaN 93947.7 NaN 22335 5117 27452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27455 106.47 NaN 96343 35 0 15975 0.261 + -1 VRFCRLIL 8 38 538.8231884711809 1075.6318240091616 2 539.3262939453125 MULTI HCD FTMS 0 0 0 27452 9488.3447265625 0.147362218763908 -10 0.092864990234375 3 Carbamidomethyl (C) _VRFC(Carbamidomethyl (C))RLIL_ REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;REV__ENSG00000197653|ENST00000673944|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 13.50788311687929 0.4944073034352369 1 {I|L}{I|L}{I|L} 3 -1 34.693 0 0 3.2253 0 0 718.3697736753081 0 718.3697736753081 0 34.69273760456403 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L}{I|L} 3.2253 + + 8 NaN NaN 99904.3 NaN 22336 5117 27452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27457 106.47 NaN 201940 35 0 42506 0.327 -1 0 39 563.3029301271386 1124.591307321077 2 563.302734375 MULTI HCD FTMS 0 0 0 27456 156309.890625 0.2797421731844363 -9 0.09108734130859375 1 NaN NaN 1 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 4 -1 46.938 0 0 4.1738 0 0 585.3169422834 0 585.3169422834 0 44.463950151760656 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 4.1738 - 27 NaN NaN 120949.8 NaN 22337 5118 27456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27458 106.48 NaN 27553 35 0 5899.3 0.261 + -1 PECWFMHCC 9 18 606.7108154296875 NaN 0 606.7108154296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _PECWFMHC(Carbamidomethyl (C))C_ REV__ENSG00000166313|ENST00000609360|APBB1;REV__ENST00000526240.5_1_11:6416766-6417497:-|nuORF;REV__nc|ENSG00000166313|O00213-2|APBB1;REV__nc|ENSG00000166313|O00213-3|APBB1;REV__nc|ENSG00000166313|O00213-4|APBB1;REV__nc|ENSG00000166313|O00213-5|APBB1;REV__nc|ENSG00000166313|O00213-6|APBB1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84024 NaN 22338 5118 27456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27459 106.48 NaN 23994 35 0 4323.7 0.261 -1 MTRKRTYW 8 20 600.3026733398438 NaN 0 600.3026733398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))TRKRTYW_ ENSG00000121270|ENST00000356608|ABCC11;ENST00000567385.5_1_16:48244807-48265838:-|nuORF;nc|ENSG00000121270|Q96J66-2|ABCC11 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86800.9 NaN 22339 5118 27456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27461 106.49 NaN 75198 35 0 7642.3 0.327 + 13529 KYPENFFLL 9 30 585.8135385759193 1169.6125242186386 2 585.8133544921875 MULTI HCD FTMS 0 0 0 27460 37407.8359375 0.30974538107255206 -62 0.6558685302734375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3687611310562 0 778.3687611310562 0 24.20818753952375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 10 NaN NaN 92615.6 NaN 22340 5119 27460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27462 106.49 NaN 83512 35 0 9999.3 0.261 + 20893 PKAQNTVQVF 10 41 566.3092314555228 NaN 0 566.2977905273438 PEAK HCD FTMS 0 0 0 27460 8460.4619140625 0.407962544823543 -1 0.01297760009765625 2 Unmodified _PKAQNTVQVF_ REV__ENST00000471858.5_1_3:112693853-112693907:-|nuORF 3.944395688203298 0.33680843299986807 1 S 1 -1 5.4846 0 0 0.4851 0 0 203.16001456944542 837.3906344049436 1040.550648974389 0 0 0 0 0 0 0 0 0 S 0.4851 - 10 + NaN NaN 105596.6 NaN 22341 5119 27460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27463 106.49 NaN 24704 35 0 3460.7 0.261 -1 YMYLCLCFL 9 25 621.2730102539062 NaN 0 621.2730102539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))YLCLC(Carbamidomethyl (C))FL_ ENST00000473217.5_1_17:27901722-27902547:-|nuORF 2.302733041254933 0.2840881193086663 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89567.7 NaN 22342 5119 27460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27465 106.5 NaN 140810 35 0 18251 0.411 + 17529 LYVDSLFFL 9 52 558.8025822399144 1115.5906115466287 2 559.3042602539062 MULTI HCD FTMS 0 0 0 27464 80513.609375 1 0 0 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.00464763827098139 1 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 77.713 0 0 6.9661 6.9661 95.146 0 0 0 3.65279269351241 68.24925630161275 3.65279269351241 77.7132064533734 0 2.4247425010840047 0 1.1861818737241734 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 6.9661 + + 239 NaN NaN 117984.4 NaN 22343 5120 27464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27467 106.51 NaN 295090 35 0 23781 0.327 + 21180 PPTRPRRRRRP 11 77 482.2994318492407 1443.8764661479222 3 482.2990417480469 MULTI HCD FTMS 0 0 0 27466 213646.609375 1 0 0 1 Unmodified _PPTRPRRRRRP_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 1.3296431237094175 0.4130893034510334 1 A 1 -1 5.7969 0 0 0.40148 0 0 765.473769469991 604.3524874322874 1369.8262569022784 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.40148 - 6 + NaN NaN 146612.5 NaN 22344 5121 27466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27468 106.51 NaN 103380 35 0 30585 0.261 + -1 KSSCGPCA 8 36 405.1674241749077 808.3202954166154 2 405.16796875 MULTI HCD FTMS 0 0 0 27466 38954.78125 0.017491605789392566 81 -0.8365402221679688 2 Carbamidomethyl (C) _KSSC(Carbamidomethyl (C))GPCA_ REV__ENSG00000198728|ENST00000673968|LDB1 0.7936320650641473 0.540814922690045 1 {I|L} 1 -1 8.0989 0 0 1.0019 0 0 155.09320269899303 537.1207369440061 692.2139396429991 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 1.0019 - 4 + NaN NaN 95781.2 NaN 22345 5121 27466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27469 106.51 NaN 48693 35 0 10236 0.261 + -1 LMEMIFIYT 9 35 588.7864873599411 NaN 0 588.7858276367188 PEAK HCD FTMS 0 0 0 27466 19586.09765625 0.3690074134999677 1 -0.0159759521484375 3 Oxidation (M) _LMEM(Oxidation (M))IFIYT_ REV__ENSG00000007314|ENST00000435607|SCN4A 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82949.9 NaN 22346 5121 27466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27470 106.52 NaN 29463 35 0 4371.4 0.261 -1 DYMNLLGMIF 10 20 624.7859019134389 1247.5572508936777 2 624.7859497070312 MULTI HCD FTMS 0 0 0 27466 11450.40625 0.43912985802565907 -1 0.0078125 4 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 5.731851221503515 0.44496410492002586 1 {I|L} 1 -1 14.732 0 0 1.1809 0 0 652.2519052899653 479.19709192447505 1131.4489972144404 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.1809 + + 4 + NaN NaN 86259.8 NaN 22347 5121 27466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27472 106.52 NaN 86567 35 0 10408 0.327 + 17530 LYVDSLFFL 9 33 558.8025822399144 1115.5906115466287 2 558.8023071289062 MULTI HCD FTMS 0 0 0 27471 101557.15625 0.859562397562047 2 -0.0171966552734375 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 28.486842064014134 0.11819662193267319 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 5 44.24 0 0 3.9656 0 0 577.2742787091812 0 577.2742787091812 0 38.75569708000178 0 0 0 1.3807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.9656 + + 21 NaN NaN 109097 NaN 22348 5122 27471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27473 106.53 NaN 32206 35 0 5201.5 0.261 -1 RYYNKQCVL 9 22 622.3169240377382 1242.6192951422763 2 622.3155517578125 MULTI HCD FTMS 0 0 0 27471 8924.0458984375 0.15138996719533354 -57 0.6151504516601562 2 Carbamidomethyl (C) _RYYNKQC(Carbamidomethyl (C))VL_ KCNF1|p.R417C|1|0.19|ENSG00000162975|chr2:10913675-10913675|C/T|missense_variant 2.0597508629832335 0.3354026079994024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85477.8 NaN 22349 5122 27471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27475 106.53 NaN 186340 35 0 29160 0.411 -1 0 63 580.8039282838145 1159.5933036344288 2 580.8038330078125 MULTI HCD FTMS 0 0 0 27474 99141.3984375 0.2965001618238062 23 -0.2303619384765625 1 NaN NaN 1 PY{I|L}EPE 6 -1 62.256 0 0 5.3687 0 0 413.22996718574376 0 413.22996718574376 0 33.661968799114845 0 0 0 1.805462187404089 0 0.3054621874040891 0 PY{I|L}EPE 5.3687 - 336 NaN NaN 141093.3 NaN 22350 5123 27474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27478 106.55 NaN 107160 35 0 13163 0.327 + -1 SYLVPNVCCH 10 35 596.2686333053574 1190.5227136775147 2 596.2684326171875 MULTI HCD FTMS 0 0 0 27477 17727.0234375 0.22574817306923176 5 -0.05016326904296875 1 Carbamidomethyl (C) _SYLVPNVC(Carbamidomethyl (C))CH_ REV__ENSG00000144476|ENST00000272928|ACKR3 1.4819007175156935 0.4674597685733628 1 G 1 -1 6.9897 0 0 0.58711 0 0 100.0511370216553 1030.4259078403416 1130.4770448619968 0 0 0 0 0 0 0 0 0 G 0.58711 - 3 + NaN NaN 94377.5 NaN 22351 5125 27477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27479 106.55 NaN 72891 35 0 4697.3 0.262 + 23810 RRRALRRRQPP 11 59 487.97488322378456 1460.9028202715538 3 487.9747009277344 MULTI HCD FTMS 0 0 0 27477 18731.349609375 0.2788818439882125 11 -0.11510467529296875 2 Unmodified _RRRALRRRQPP_ REV__ENST00000393606.7_1_17:42294008-42297052:-|nuORF 0.09484139111097674 0.41850472438158626 1 P 1 -1 2.2185 0 0 0.15186 0 0 765.4713760350288 595.3537691705686 1360.8251452055974 0 0 0 0 0 0 0 0 0 P 0.15186 + + 8 + NaN NaN 104987.2 NaN 22352 5125 27477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27480 106.55 NaN 36957 35 0 4586.8 0.261 + 5355 FFYPLDFTF 9 29 598.7867333715757 NaN 0 598.7868041992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FFYPLDFTF_ ENSG00000117450|ENST00000319248|PRDX1;ENSG00000123131|ENST00000379341|PRDX4;ENSG00000165672|ENST00000298510|PRDX3;ENSG00000167815|ENST00000301522|PRDX2;ENST00000450181.1_1_13:30870304-30870610:+|nuORF;ENST00000466174.5_1_19:12911560-12912565:-|nuORF;ENST00000477555.1_1_19:12910938-12912565:-|nuORF;nc|ENSG00000165672|P30048-2|PRDX3;nc|ENSG00000167815|P32119-2|PRDX2 7.289230182591677 0.2599242500475609 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83009.6 NaN 22353 5125 27477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27482 106.56 NaN 1221200 35 0 216240 0.327 + 6196 FPELYPFLL 9 51 569.813040424913 1137.6115279166258 2 569.8128662109375 MULTI HCD FTMS 0 0 0 27481 392954.1875 0.12689186382205234 26 -0.26190185546875 1 Unmodified _FPELYPFLL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 42.09456458481378 0.05572955244001856 1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 53.176 0 0 4.6743 4.6743 88.807 0 0 0 1.7956061064919027 32.00470518497275 1.7956061064919027 20.521898215865143 0 1.7134679910804405 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}E][{I|L}P]YP{M(Oxidation (M))|F}{I|L}{I|L} 4.6743;2.8704 -;- 139 NaN NaN 263364.2 NaN 22354 5126 27481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27483 106.56 NaN 248260 35 0 42654 0.261 + -1 VRFCRLIL 8 35 538.8231884711809 1075.6318240091616 2 538.8236694335938 MULTI HCD FTMS 0 0 0 27481 29261.12890625 0.4104942777336094 -3 0.02709197998046875 2 Carbamidomethyl (C) _VRFC(Carbamidomethyl (C))RLIL_ REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;REV__ENSG00000197653|ENST00000673944|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 13.50788311687929 0.4944073034352369 1 {I|L}{I|L}{I|L} 3 -1 34.693 0 0 3.2253 0 0 718.3691516559272 0 718.3691516559272 0 34.69273760456403 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L}{I|L} 3.2253 + + 7 NaN NaN 114744.8 NaN 22355 5126 27481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27485 106.57 NaN 33255 35 0 4603.1 0.411 + 24229 RYFLPPYTF 9 30 602.3135276820917 1202.6125024309833 2 602.3142700195312 MULTI HCD FTMS 0 0 0 27484 9704.439453125 0.27289647178595333 -52 0.5505599975585938 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 25.502 0 0 2.1205 0 0 579.3163583984274 0 579.3163583984274 0 25.501896823007826 0 0 0 0.805462187404089 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.1205 + + 8 NaN NaN 113569.2 NaN 22356 5127 27484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27487 106.58 NaN 474970 35 0 72997 0.327 -1 0 72 476.62392989085254 1426.8499602727577 3 476.6236572265625 MULTI HCD FTMS 0 0 0 27486 165294.609375 0.43368163076695015 8 -0.08541107177734375 1 NaN NaN 1 P 1 -1 7.7423 0 0 0.54261 0 0 792.4723131798787 534.2952974908811 1326.76761067076 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.54261 - 14 + NaN NaN 151038.4 NaN 22357 5128 27486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27488 106.58 NaN 75784 35 0 9205.5 0.261 -1 FPIELCQLQ 9 36 574.2938174766275 1146.573082020055 2 574.2938232421875 MULTI HCD FTMS 0 0 0 27486 31295.779296875 0.42458653564155674 1 -0.01271820068359375 2 Carbamidomethyl (C) _FPIELC(Carbamidomethyl (C))QLQ_ ENSG00000240720|ENST00000458448|LRRD1 19.256988751693697 0.19398022840297344 1 {I|L}PE 3 -1 35.445 0 0 3.0914 0 0 789.368944236525 0 789.368944236525 0 27.37334396171555 0 0 0 0.9247425010840047 0 0 0 {I|L}PE 3.0914 - 15 NaN NaN 84921.9 NaN 22358 5128 27486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27489 106.58 NaN 34044 35 0 5546.9 0.261 + -1 AWTLIRERC 9 23 602.8146362304688 NaN 0 602.8146362304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _AWTLIRERC(Carbamidomethyl (C))_ REV__ENST00000429927.6_2_4:76555473-76555581:-|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89821.9 NaN 22359 5128 27486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27491 106.59 NaN 36202 35 0 4057.8 0.411 -1 MYIIPVVLF 9 39 555.8170166015625 NaN 0 555.8170166015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18155047927120396 1 {I|L}V 2 -1 15.969 0 0 1.4392 0 0 165.08141672433788 729.3615816705686 894.4429983949065 0 0 0 0 0 0.5 0 0 0 {I|L}V 1.4392 - 12 + NaN NaN 96317.6 NaN 22360 5129 27490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27493 106.6 NaN 409910 35 0 92791 0.327 -1 0 32 563.3029301271386 1124.591307321077 2 563.302734375 MULTI HCD FTMS 0 0 0 27492 137252.015625 0.24563498171075318 3 -0.0264129638671875 1 NaN NaN 1 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F} 9 -1 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F} + + 58.488 14.437 2.3312 5.2008 5.2008 61.937 0 0 0 0 48.566147098514705 0 0 0 2 0 0 0.805462187404089 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F} 5.2008 - 111 + NaN NaN 150378.5 NaN 22361 5130 27492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27494 106.6 NaN 111820 35 0 21444 0.261 -1 MPSWFDIIGL 10 40 597.796940343817 1193.579327754434 2 597.7958374023438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))PSWFDIIGL_ ENSG00000120992|ENST00000316963|LYPLA1;ENST00000402650.1_1_6:71874941-71875379:+|nuORF;ENST00000519926.5_1_8:54966225-55014407:-|nuORF 3.5964929083625545 0.45626689593999237 1 {I|L}{[VA]|[{I|L}G]} 3 -1 15.458 0 0 1.2951 0 0 892.3749256818375 0 892.3749256818375 0 9.973024840566469 0 0 0 0.5 0 0 0 {I|L}{[VA]|[{I|L}G]} 1.2951 + + 5 NaN NaN 100037.9 NaN 22362 5130 27492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27496 106.61 NaN 76285 35 0 8133.1 0.411 + 13530 KYPENFFLL 9 45 585.8135385759193 1169.6125242186386 2 585.8134765625 MULTI HCD FTMS 0 0 0 27495 39964.62890625 0.33091620778790304 -50 0.5263442993164062 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 35.433 0 0 3.0295 0 0 631.29692275215 0 631.29692275215 0 33.21456278567766 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.0295 + + 36 NaN NaN 110422 NaN 22363 5131 27495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27498 106.61 NaN 146010 35 0 25663 0.327 + 7701 FYLLLGNLL 9 38 533.3207803569244 1064.6270077806487 2 533.3203735351562 MULTI HCD FTMS 0 0 0 27497 22835.865234375 0.12604124498269742 -20 0.2079010009765625 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 60.38955033654506 0.017036522530421875 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 49.089 0 0 4.6109 4.6109 87.524 0 0 0 4.651049597579728 40.788493772929044 4.651049597579728 13.455612550363796 0 1.25 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GGG{I|L}{I|L} 4.6109;3.3471 +;- + 35 NaN NaN 104026.6 NaN 22364 5132 27497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27499 106.62 NaN 115570 35 0 9357.3 0.261 + 5389 FGSIPKLSHF 10 46 566.811678827325 NaN 0 566.799072265625 PEAK HCD FTMS 0 0 0 27497 9163.6357421875 0.504545964374514 -4 0.03745269775390625 2 Unmodified _FGSIPKLSHF_ REV__CON__ENSEMBL:ENSBTAP00000001528;REV__ENSG00000205726|ENST00000381318|ITSN1;REV__ENST00000470742.5_1_21:35091133-35094274:+|nuORF;REV__ITSN1|p.P715Sfs*27|1|0.06|ENSG00000205726|chr21:33797568-33797569|-/AG|frameshift_variant;REV__nc|ENSG00000205726|Q15811-10|ITSN1;REV__nc|ENSG00000205726|Q15811-11|ITSN1;REV__nc|ENSG00000205726|Q15811-12|ITSN1;REV__nc|ENSG00000205726|Q15811-13|ITSN1;REV__nc|ENSG00000205726|Q15811-2|ITSN1;REV__nc|ENSG00000205726|Q15811-3|ITSN1;REV__nc|ENSG00000205726|Q15811-4|ITSN1;REV__nc|ENSG00000205726|Q15811-5|ITSN1;REV__nc|ENSG00000205726|Q15811-6|ITSN1;REV__nc|ENSG00000205726|Q15811-7|ITSN1;REV__nc|ENSG00000205726|Q15811-8|ITSN1;REV__nc|ENSG00000205726|Q15811-9|ITSN1 3.944395688203298 0.33680843299986807 1 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.48467 0 0 204.163243538897 764.3996065729124 968.5628501118094 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.48467 - 5 + NaN NaN 98576.5 NaN 22365 5132 27497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27501 106.62 NaN 94044 35 0 9125.4 0.327 + -1 GFSALLCLHD 10 37 566.7749447470565 NaN 0 566.77490234375 PEAK HCD FTMS 0 0 0 27500 22240.31640625 0.687006040888745 13 -0.1392059326171875 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 1 S 1 -1 14.292 0 0 1.263 0 0 204.0911316314769 837.3895917445246 1041.4807233760016 0 0 0 0 0 0.8807196863200843 0 0 0 S 1.263 + + 11 + NaN NaN 98575.7 NaN 22366 5133 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27502 106.63 NaN 115530 35 0 10106 0.261 + 17644 LYYPLLLEH 9 44 580.8222844882212 1159.6300160432422 2 581.3059692382812 MULTI HCD FTMS 0 0 0 27500 27233.328125 0.7403293679094173 -14 0.13756561279296875 2 Unmodified _LYYPLLLEH_ ENSG00000161992|ENST00000409413|PRR35 16.942295170755138 0.21397866736869717 1 [Y{I|L}]P{I|L}Y{I|L} 6 4 53.148 0 0 4.5832 0 0 0 394.1746920221313 394.1746920221313 46.15865011156764 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}]P{I|L}Y{I|L} 4.5832 - 35 + NaN NaN 104307.1 NaN 22367 5133 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27504 106.63 NaN 143920 35 0 19300 0.327 + 23983 RVRQRRHARLP 11 53 482.2994318492407 1443.8764661479222 3 482.29931640625 MULTI HCD FTMS 0 0 0 27503 39531.640625 0.18503284812544196 13 -0.13639068603515625 1 Unmodified _RVRQRRHARLP_ REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF 0.4545168274142398 0.41692731010159206 1 C 1 -1 2.2185 0 0 0.15365 0 0 1201.732116027608 136.11309229068596 1337.845208318294 0 0 0 0 0 0 0 0 0 C 0.15365 - 3 + NaN NaN 109020 NaN 22368 5134 27503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27505 106.64 NaN 119750 35 0 27939 0.261 + -1 RFLMRWPHC 9 40 434.88223622800285 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 27503 82297.5546875 0.8022767441968506 348 -2.6554489135742188 2 Carbamidomethyl (C) _RFLMRWPHC(Carbamidomethyl (C))_ REV__ENST00000468592.5_1_2:172300063-172325523:+|nuORF 1.0714618166137932 0.2900546878344058 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92106.1 NaN 22369 5134 27503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27506 106.64 NaN 32103 35 0 4027.1 0.261 -1 0 25 647.3938800329865 646.3866035663865 1 647.3935546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90353.6 NaN 22370 5134 27503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27508 106.65 NaN 85380 35 0 19642 0.327 + -1 VAAAGCTC 8 45 405.1674241749077 808.3202954166154 2 405.16796875 MULTI HCD FTMS 0 0 0 27507 12718.9423828125 0.005711101925855471 95 -0.9688644409179688 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 1 N 1 -1 5.4846 0 0 0.67851 0 0 422.11486436368415 269.1399325006469 691.2547968643311 0 0 0 0 0 0 0 0 0 N 0.67851 - 6 + NaN NaN 92336.6 NaN 22371 5135 27507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27509 106.65 NaN 92935 35 0 11311 0.261 + 17531 LYVDSLFFL 9 37 558.8025822399144 1115.5906115466287 2 558.8028564453125 MULTI HCD FTMS 0 0 0 27507 22593.494140625 0.19122746943615493 15 -0.150115966796875 2 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 30.636539890814138 0.10832830463492794 1 {M(Oxidation (M))|F}{I|L}SDP{M(Oxidation (M))|F}{I|L} 7 6 44.909 0 0 4.0256 0 0 278.16279799629064 0 278.16279799629064 0 40.92941036290071 0 0 0 1.0172203223519531 0 0 0 {M(Oxidation (M))|F}{I|L}SDP{M(Oxidation (M))|F}{I|L} 4.0256 - 70 NaN NaN 100130 NaN 22372 5135 27507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27510 106.65 NaN 132230 35 0 25914 0.261 + 33066 YDIEEDKLGI 10 35 597.796940343817 1193.579327754434 2 597.7977905273438 MULTI HCD FTMS 0 0 0 27507 14075.7783203125 0.1289684635999553 -11 0.105865478515625 3 Unmodified _YDIEEDKLGI_ ENSG00000100151|ENST00000356976|PICK1;ENST00000466374.1_1_22:38453534-38463917:+|nuORF;ENST00000469819.5_1_22:38453534-38461185:+|nuORF;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 11.494710602746466 0.4035943721457025 1 {I|L}G{I|L} 3 7 35.445 0 0 2.9697 0 0 892.3781605451187 0 892.3781605451187 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 + {I|L}G{I|L} 2.9697 + + 10 NaN NaN 99276.2 NaN 22373 5135 27507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27511 106.66 NaN 30519 35 0 4007 0.261 -1 DYMNLLGMIF 10 21 624.7859019134389 1247.5572508936777 2 625.288330078125 MULTI HCD FTMS 0 0 0 27507 15407.5400390625 0.5978543388631745 2 -0.023956298828125 4 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 8.155526934196011 0.43213520406898465 1 {I|L} 1 -1 16.99 0 0 1.3618 0 0 652.2522715009028 479.19516931705317 1131.447440817956 0 0 0 0 0 1 0 0 0 {I|L} 1.3618 + + 2 + NaN NaN 89589.1 NaN 22374 5135 27507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27513 106.66 NaN 127610 35 0 13576 0.411 + 6416 FPHPHVQWL 9 52 580.8039282838145 1159.5933036344288 2 580.8050537109375 MULTI HCD FTMS 0 0 0 27512 26533.3203125 0.07935266084973246 36 -0.3544769287109375 1 Unmodified _FPHPHVQWL_ sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1 10.823927491677226 0.26684000660059787 1 {I|L}Y{I|L}PEE 6 8 38.761 0 0 3.3426 0 0 397.19786269355626 0 397.19786269355626 0 15.573193899842437 0 0 0 0 0 0 0 {I|L}Y{I|L}PEE 3.3426 - 98 NaN NaN 119687.3 NaN 22375 5136 27512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27517 106.68 NaN 707920 35 0 98079 0.327 + 11436 IYPYLLPFI 9 54 569.8311416199796 1137.647730306759 2 569.8131713867188 MULTI HCD FTMS 0 0 0 27516 146606.03125 0.48863607484056865 1 -0.0191497802734375 1 Unmodified _IYPYLLPFI_ ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-2|LTN1;nc|ENSG00000198862|O94822-3|LTN1 45.7499826716795 0.03894913563566938 1 [Y{I|L}]V{I|L}{I|L} 5 5 46.708 0 0 4.1057 0 0 0 533.2402437799436 533.2402437799436 19.69167233853179 0 0 0 0 1.75 1.3010299956639813 0 0 [Y{I|L}]V{I|L}{I|L} 4.1057 - 149 + NaN NaN 194210.9 NaN 22376 5139 27516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27518 106.69 NaN 204850 35 0 38654 0.261 -1 0 35 500.80772917360025 999.6009054140005 2 500.8075256347656 MULTI HCD FTMS 0 0 0 27516 68348.03125 0.07311212712142258 -13 0.123992919921875 2 NaN NaN 1 RV{I|L}{I|L}{I|L} 5 -1 50.701 0 0 5.0721 0 0 387.1766834943375 0 387.1766834943375 0 50.70107520596089 0 0 0 1.4247425010840047 0 0 0 RV{I|L}{I|L}{I|L} 5.0721 - 18 NaN NaN 112502.3 NaN 22377 5139 27516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27519 106.69 NaN 161360 35 0 18983 0.261 + 6417 FPHPHVQWL 9 43 580.8039282838145 1159.5933036344288 2 580.8043212890625 MULTI HCD FTMS 0 0 0 27516 15534.53125 0.046458806331904315 39 -0.3841705322265625 3 Unmodified _FPHPHVQWL_ sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1 7.910154910731844 0.2910521888787154 1 {I|L}Y{I|L}PEE 6 8 42.528 0 0 3.6675 0 0 397.1966725080094 0 397.1966725080094 0 42.52849272132933 0 0 0 0.28872548999643577 0 0 0 {I|L}Y{I|L}PEE 3.6675 - 31 NaN NaN 111560.5 NaN 22378 5139 27516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27520 106.69 NaN 40631 35 0 8512.7 0.261 + 20080 NYIPRFWTF 9 28 622.3169240377382 1242.6192951422763 2 622.3161010742188 MULTI HCD FTMS 0 0 0 27516 15576.2041015625 0.2642390071499117 -42 0.4245758056640625 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 9.38312468134398 0.279288223203164 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4070813573732 849.4070813573732 37.447274948966935 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 7 NaN NaN 91236.9 NaN 22379 5139 27516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27521 106.7 NaN 46082 35 0 5041.4 0.262 + 7335 FVARRFNL 8 36 511.7986042108228 1021.5826554884457 2 511.79913330078125 MULTI HCD FTMS 0 0 0 27516 13737.646484375 0.06378938691449267 -13 0.123992919921875 5 Unmodified _FVARRFNL_ REV__ENSG00000115368|ENST00000314761|WDR75;REV__ENST00000472286.5_1_2:190306218-190320233:+|nuORF;REV__ENST00000475596.1_1_2:190306218-190316629:+|nuORF 2.302733041254933 0.5385759549224092 1 PE 2 -1 20.969 0 0 2.0526 0 0 777.4615956037125 0 777.4615956037125 0 19.3753063169585 0 0 0 0 0 0 0 PE 2.0526 - 2 NaN NaN 83741 NaN 22380 5139 27516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27524 106.71 NaN 34222 35 0 5546.9 0.327 + 24230 RYFLPPYTF 9 22 602.3135276820917 1202.6125024309833 2 602.314208984375 MULTI HCD FTMS 0 0 0 27523 13817.7138671875 0.3885649841721713 -39 0.3833770751953125 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 7.289230182591677 0.29575926068275815 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87280.8 NaN 22381 5141 27523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27525 106.71 NaN 25241 35 0 5695 0.261 + 33728 YLDMHSLPHV 10 19 606.2999267578125 NaN 0 606.2999267578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YLDMHSLPHV_ ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 3.5964929083625545 0.337106189561315 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90098.1 NaN 22382 5141 27523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27527 106.72 NaN 245130 35 0 51775 0.327 -1 FLRRCLNF 8 38 563.3029301271386 1124.591307321077 2 563.3028564453125 MULTI HCD FTMS 0 0 0 27526 169681.28125 0.30367246868255904 15 -0.16292572021484375 1 Carbamidomethyl (C) _FLRRC(Carbamidomethyl (C))LNF_ ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B 13.50788311687929 0.4944073034352369 1 {I|L}VQ{M(Oxidation (M))|F} 4 -1 57.167 0 0 5.0834 0 0 619.2995725572083 0 619.2995725572083 0 48.187587626244124 0 0 0 2 0 0 0.7614393726401688 {I|L}VQ{M(Oxidation (M))|F} 5.0834 - 27 + NaN NaN 122956 NaN 22383 5142 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27528 106.72 NaN 61577 35 0 6597.5 0.261 + -1 MPSHSNRFR 9 34 574.2774198767153 NaN 0 574.2932739257812 PEAK HCD FTMS 0 0 0 27526 10240.9326171875 0.675367337170673 1 -0.01273345947265625 2 Oxidation (M) _M(Oxidation (M))PSHSNRFR_ REV__ENST00000233813.4_1_2:217539197-217539506:-|nuORF 10.073929032068715 0.24642998803896465 1 P{I|L} 2 -1 10.969 0 0 0.95671 0 0 147.03851278151257 786.3437594049436 933.3822721864562 0 0 0 0 0 0 0 0 0 P{I|L} 0.95671 - 7 + NaN NaN 91021 NaN 22384 5142 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27529 106.73 NaN 24800 35 0 4339.3 0.261 + 34743 YPWKAGSPFL 10 26 583.3080444335938 NaN 0 583.3080444335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YPWKAGSPFL_ ENSG00000141579|ENST00000269394|ZNF750;ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88142.6 NaN 22385 5142 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27531 106.73 NaN 94381 35 0 12945 0.411 + 17645 LYYPLLLEH 9 54 580.8222844882212 1159.6300160432422 2 581.32373046875 MULTI HCD FTMS 0 0 0 27530 5049.2998046875 0.1372636100748131 -4 0.0483245849609375 1 Unmodified _LYYPLLLEH_ ENSG00000161992|ENST00000409413|PRR35 16.942295170755138 0.21397866736869717 1 [Y{I|L}]P{I|L}Y{I|L} 6 4 51.643 0 0 4.4534 0 0 0 394.1750582330688 394.1750582330688 42.17925002484726 0 0 0 0 0.9247425010840047 2 0 0 [Y{I|L}]P{I|L}Y{I|L} 4.4534 - 80 + NaN NaN 113500.1 NaN 22386 5143 27530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27533 106.74 NaN 243040 35 0 45336 0.327 + 7702 FYLLLGNLL 9 44 533.3207803569244 1064.6270077806487 2 533.3207397460938 MULTI HCD FTMS 0 0 0 27532 34958.56640625 0.19295179698386616 -8 0.07746124267578125 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 93.88341677533236 0.004424206486747196 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 72.189 0 0 6.7807 6.7807 92.133 0 0 0 4.762036441594191 65.19971887365664 4.762036441594191 17.703037561203843 0 1.6861818737241734 0 0 0.8494850021680094 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GGG{I|L}{I|L} 6.7807;5.1179 +;- + 126 NaN NaN 124338.5 NaN 22387 5144 27532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27534 106.74 NaN 102290 35 0 13755 0.261 -1 0 35 566.2976747598004 1130.5807965864008 2 566.2968139648438 MULTI HCD FTMS 0 0 0 27532 24753.392578125 0.26350636403737554 -37 0.372161865234375 2 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 27.519 0 0 2.434 0 0 866.4331636326554 0 866.4331636326554 0 6.549471895720984 0 0 0 0.805462187404089 0 0 0 V{M(Oxidation (M))|F} 2.434 - 18 NaN NaN 101612.2 NaN 22388 5144 27532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27535 106.75 NaN 74459 35 0 10125 0.261 + 13531 KYPENFFLL 9 33 585.8135385759193 1169.6125242186386 2 585.8138427734375 MULTI HCD FTMS 0 0 0 27532 28632.70703125 0.2370853199140176 -37 0.372161865234375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 G{M(Oxidation (M))|F}{I|L}{I|L} 4 6 33.928 0 0 2.9008 0 0 721.335252830275 0 721.335252830275 0 33.92790030352131 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F}{I|L}{I|L} 2.9008 - 25 NaN NaN 90338.2 NaN 22389 5144 27532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27536 106.75 NaN 64511 35 0 6542.4 0.261 + 35618 YYIFIPSKF 9 38 589.3206912274588 NaN 0 589.3189086914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 1 {I|L} 1 8 15.485 0 0 1.316 0 0 326.13103585054927 734.3906344049436 1060.5216702554928 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.316 + + 2 + NaN NaN 92546.7 NaN 22390 5144 27532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27540 106.77 NaN 56893 35 0 5655.4 0.411 + 17532 LYVDSLFFL 9 43 558.8025288863669 1115.5905048395337 2 558.8032836914062 MULTI HCD FTMS 0 0 0 27539 45749.890625 0.7070248081061747 -5 0.05035400390625 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 34.10243960390752 0.09241788333544565 1 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 5 40.745 0 0 3.6524 0 0 577.2740956037125 0 577.2740956037125 0 36.141303353600094 0 0 0 1.3807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.6524 + + 51 NaN NaN 110849.6 NaN 22391 5147 27539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27542 106.78 NaN 167900 35 0 32256 0.327 + 20879 PIPFCGDYIGL 11 36 597.796940343817 1193.579327754434 2 597.796875 MULTI HCD FTMS 0 0 0 27541 9347.03125 0.08564160589213561 1 -0.0093841552734375 1 Unmodified _PIPFCGDYIGL_ ENSG00000166866|ENST00000300119|MYO1A 8.155526934196011 0.3831532958467648 1 {I|L}G{I|L} 3 8 31.198 0 0 2.6138 0 0 892.3756581037125 0 892.3756581037125 0 25.713337517843655 0 0 0 0.5 0 0 0 + {I|L}G{I|L} 2.6138 + + 7 NaN NaN 102022.6 NaN 22392 5148 27541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27543 106.78 NaN 41696 35 0 6550.5 0.261 + 24231 RYFLPPYTF 9 26 602.3135276820917 1202.6125024309833 2 602.314453125 MULTI HCD FTMS 0 0 0 27541 18009.658203125 0.5064457566501815 -32 0.32402801513671875 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 3.5964929083625545 0.32375295897743744 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112086.1 NaN 22393 5148 27541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27545 106.79 NaN 70784 35 0 10034 0.327 + 20811 PHLLLRLGL 9 27 516.337897626284 NaN 0 516.3380737304688 PEAK HCD FTMS 0 0 0 27544 44503.34375 0.6354001024416448 -34 0.34119415283203125 1 Unmodified _PHLLLRLGL_ ENST00000609924.1_1_18:3246993-3247071:-|nuORF 2.302733041254933 0.2840881193086663 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97640.6 NaN 22394 5149 27544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27546 106.79 NaN 82349 35 0 7750.4 0.261 + 15128 LMLFWFFI 8 37 558.8025288863669 1115.5905048395337 2 558.8018798828125 MULTI HCD FTMS 0 0 0 27544 58306.421875 0.9010750883632204 -3 0.02337646484375 2 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 17.086550045450526 0.4680768486079041 1 C{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 -1 37.713 0 0 3.3805 0 0 587.3655873029312 0 587.3655873029312 0 33.733309973369465 0 0 0 1 0 0 0 C{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.3805 - 31 NaN NaN 100603.7 NaN 22395 5149 27544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27548 106.8 NaN 79904 35 0 21491 0.327 -1 0 28 572.1139177700386 2284.426565213754 4 572.364013671875 MULTI HCD FTMS 0 0 0 27547 44206.6875 0.5914624292742992 4 -0.0524444580078125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97677.6 NaN 22396 5150 27547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27549 106.8 NaN 125680 35 0 15958 0.261 -1 0 40 580.8039282838145 1159.5933036344288 2 580.82177734375 MULTI HCD FTMS 0 0 0 27547 17898.509765625 0.053528708748831415 49 -0.5173568725585938 2 NaN NaN 1 {I|L}Y{I|L}PEE 6 -1 38.136 0 0 3.2887 0 0 397.1968250959 0 397.1968250959 0 37.65153777800478 0 0 0 0 0 0 0 {I|L}Y{I|L}PEE 3.2887 - 26 NaN NaN 102283.3 NaN 22397 5150 27547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27550 106.8 NaN 40966 35 0 7046.6 0.261 + 20081 NYIPRFWTF 9 26 622.3169240377382 1242.6192951422763 2 622.318115234375 MULTI HCD FTMS 0 0 0 27547 14459.267578125 0.24529098900131843 -31 0.30995941162109375 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 5.731851221503515 0.3075653528928475 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 7 20.458 0 0 1.6463 0 0 852.4284209741107 0 852.4284209741107 0 14.973024840566467 0 0 0 1 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.6463 - 10 + NaN NaN 86800.8 NaN 22398 5150 27547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27551 106.81 NaN 51464 35 0 3772.2 0.261 + 12632 KVVLFLMKSI 10 37 589.3709122785685 NaN 0 589.823974609375 PEAK HCD FTMS 0 0 0 27547 5775.46044921875 1 0 0 4 Unmodified _KVVLFLMKSI_ ENST00000479285.5_1_1:114438325-114438811:-|nuORF 2.498486711656943 0.3380459306859131 1 {I|L} 1 9 3.9794 0 0 0.33818 0 0 326.2311911569432 734.3955172174436 1060.626708374387 0 0 0 0 0 0 0 0 0 + {I|L} 0.33818 + + 2 + NaN NaN 85224 NaN 22399 5150 27547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27553 106.81 NaN 377080 35 0 80378 0.327 -1 0 42 500.80772917360025 999.6009054140005 2 500.8076171875 MULTI HCD FTMS 0 0 0 27552 301564.59375 0.3225846964475682 -1 0.01580810546875 1 NaN NaN 1 V{I|L}{I|L}{I|L} 4 -1 46.938 0 0 4.6957 0 0 543.2692738263687 0 543.2692738263687 0 46.938200260161125 0 0 0 1.5 0 0 0 V{I|L}{I|L}{I|L} 4.6957 - 13 NaN NaN 136777.6 NaN 22400 5151 27552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27554 106.82 NaN 49528 35 0 7679.7 0.261 + 12388 KPFQFGLLVM 10 35 590.33203125 NaN 0 590.33203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KPFQFGLLVM_ REV__ENSG00000198556|ENST00000331410|ZNF789 3.944395688203298 0.33680843299986807 1 {M(Oxidation (M))|F} 1 -1 9.6041 0 0 0.81484 0 0 500.27067617011863 528.2938067446569 1028.5644829147755 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.81484 + + 3 + NaN NaN 90362.5 NaN 22401 5151 27552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27556 106.82 NaN 117420 35 0 18095 0.412 + 6712 FPPRGPRPV 9 59 511.7986042108228 1021.5826554884457 2 511.79833984375 MULTI HCD FTMS 0 0 0 27555 215359.4375 1 0 0 1 Unmodified _FPPRGPRPV_ ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4 11.640296217721598 0.25978676193971967 1 {I|L}VA{I|L}DPE 7 8 53.576 0 0 5.2444 0 0 266.15941054511876 0 266.15941054511876 0 27.377976111936775 0 0 0 1.5484550065040281 0 0 0 {I|L}VA{I|L}DPE 5.2444 - 72 NaN NaN 120492.1 NaN 22402 5152 27555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27558 106.83 NaN 398570 35 0 62650 0.327 + 11437 IYPYLLPFI 9 49 569.8311416199796 1137.647730306759 2 569.8311157226562 MULTI HCD FTMS 0 0 0 27557 106677.3984375 0.3555544393519172 15 -0.154205322265625 1 Unmodified _IYPYLLPFI_ ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-2|LTN1;nc|ENSG00000198862|O94822-3|LTN1 28.173230860318316 0.11963627304438548 1 [Y{I|L}]V{I|L}V 5 6 43.706 0 0 3.8418 0 0 0 547.2497652643186 547.2497652643186 31.92359819636687 0 0 0 0 1.3494850021680094 1.5228787452803376 0 0 [Y{I|L}]V{I|L}V 3.8418 - 77 + NaN NaN 138458.5 NaN 22403 5153 27557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27559 106.83 NaN 247770 35 0 53274 0.261 + -1 HLNRQLMIF 9 36 594.3214096557083 1186.6282663782165 2 594.3214111328125 MULTI HCD FTMS 0 0 0 27557 22522.955078125 0.018172356612433764 -24 0.2396392822265625 2 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 21.74664581756881 0.17247014374749275 1 {I|L}E{I|L}{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.9556 0 0 666.3382567572637 0 666.3382567572637 0 28.064250275506875 0 0 0 1.5 0 0 0 {I|L}E{I|L}{M(Oxidation (M))|F} 3.9556 - 51 NaN NaN 123347.5 NaN 22404 5153 27557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27560 106.84 NaN 54960 35 0 12274 0.261 + 20082 NYIPRFWTF 9 30 622.3169240377382 1242.6192951422763 2 622.31640625 MULTI HCD FTMS 0 0 0 27557 36940.87109375 0.6266750896058297 -28 0.28205108642578125 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4058911718263 849.4058911718263 37.447274948966935 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 8 NaN NaN 94091.2 NaN 22405 5153 27557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27561 106.84 NaN 40382 35 0 6329.7 0.261 -1 0 25 605.3122343594841 1208.6099157857682 2 605.3120727539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 {I|L}{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6104 0 0 930.4434748703707 0 930.4434748703707 0 19.463950151760656 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6104 - 2 NaN NaN 84878.8 NaN 22406 5153 27557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27562 106.84 NaN 27075 35 0 4177.7 0.261 -1 FLYHMGQHSN 10 22 625.27392578125 NaN 0 625.27392578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _FLYHM(Oxidation (M))GQHSN_ ENSG00000160072|ENST00000673477|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;ENST00000474481.1_1_1:1422024-1424655:+|nuORF;ENST00000485748.5_1_1:1420203-1425183:+|nuORF;nc|ENSG00000160072|Q5T9A4-3|ATAD3B 2.9952420565917617 0.3376207769591857 1 {I|L} 1 -1 5.4846 0 0 0.43928 0 0 653.2301597638688 479.19623743228755 1132.4263971961564 0 0 0 0 0 0 0 0 0 {I|L} 0.43928 + + 1 + NaN NaN 86041.6 NaN 22407 5153 27557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27564 106.85 NaN 117910 35 0 25073 0.326 + 6545 FPLDFIVQF 9 34 563.3028427501337 1124.5911325670672 2 563.3027954101562 MULTI HCD FTMS 0 0 0 27563 75376.625 0.21955057546132845 7 -0.07138824462890625 1 Unmodified _FPLDFIVQF_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 24.020572477871973 0.15282392193088168 1 VQ{M(Oxidation (M))|F} 3 6 45.005 0 0 4.0019 0 0 732.384969092261 0 732.384969092261 0 41.025684359364405 0 0 0 1.5 0 0 0.3807196863200844 + VQ{M(Oxidation (M))|F} 4.0019 + + 30 + NaN NaN 101768.1 NaN 22408 5154 27563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27566 106.86 NaN 58879 35 0 7226.1 0.411 + 25689 SILFLRCFL 9 45 556.3189614656288 NaN 0 556.3184204101562 PEAK HCD FTMS 0 0 0 27565 3887.233642578125 0.3220049197128841 1 -0.00732421875 1 Unmodified _SILFLRCFL_ REV__ENST00000531389.2_1_12:122991779-122992905:-|nuORF 2.0597508629832335 0.2852655770354268 1 {I|L} 1 -1 6.9897 0 0 0.62935 0 0 166.08546925670254 828.4346715268421 994.5201407835445 0 0 0 0 0 0 0 0 0 {I|L} 0.62935 + + 3 + NaN NaN 96711.9 NaN 22409 5155 27565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27568 106.86 NaN 194750 35 0 38818 0.327 + 7703 FYLLLGNLL 9 47 533.3208359950802 1064.6271190569603 2 533.3203735351562 MULTI HCD FTMS 0 0 0 27567 94399.6015625 0.8241114312046631 -4 0.0414276123046875 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 81.86404211737425 0.005249203329642222 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 66.621 0 0 6.2577 6.2577 90.303 0 0 0 4.762036441594191 59.1470593548587 4.762036441594191 13.455612550363796 0 1.7302046884880937 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GGG{I|L}{I|L} 6.2577;4.9938 +;- + 139 NaN NaN 115244.1 NaN 22410 5156 27567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27569 106.87 NaN 44296 35 0 7867.3 0.261 + 24232 RYFLPPYTF 9 27 602.3135276820917 1202.6125024309833 2 602.3136596679688 MULTI HCD FTMS 0 0 0 27567 20318.001953125 0.5713581988460371 -25 0.25621795654296875 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.27331982688540024 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85164.3 NaN 22411 5156 27567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27570 106.87 NaN 45145 35 0 5339.5 0.261 -1 0 25 552.2938485942598 551.2865721276597 1 553.2979736328125 MULTI HCD FTMS 0 0 0 27567 16434.533203125 0.5825051592787788 -25 0.25621795654296875 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85979.4 NaN 22412 5156 27567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27571 106.88 NaN 37410 35 0 8079 0.261 + -1 QSILTNLMN 9 22 525.2676537227259 NaN 0 525.26806640625 PEAK HCD FTMS 0 0 0 27567 11146.5361328125 0.5854760250886648 2 -0.028900146484375 4 Oxidation (M) _QSILTNLM(Oxidation (M))N_ REV__ENSG00000116984|ENST00000366577|MTR;REV__nc|ENSG00000116984|Q99707-2|MTR 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82507.7 NaN 22413 5156 27567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27573 106.88 NaN 158990 35 0 16596 0.327 + 12465 KQPRPMCSW 9 50 566.7748577900699 NaN 0 566.7748413085938 PEAK HCD FTMS 0 0 0 27572 14852.642578125 0.41656042518940234 5 -0.05384063720703125 1 Unmodified _KQPRPMCSW_ REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF 10.823927491677226 0.2427956001690155 1 SV 2 -1 17.206 0 0 1.5206 0 0 204.09000181137213 738.3203219049436 942.4103237163158 0 0 0 0 0 0.9247425010840047 0 0 0 SV 1.5206 - 30 + NaN NaN 103247.2 NaN 22414 5157 27572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27574 106.89 NaN 97821 35 0 9410.8 0.261 + 17646 LYYPLLLEH 9 48 580.8222844882212 1159.6300160432422 2 580.822021484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LYYPLLLEH_ ENSG00000161992|ENST00000409413|PRR35 11.640296217721598 0.25978676193971967 1 [Y{I|L}]P[Y{I|L}]{I|L}P 7 4 33.244 0 0 2.8668 0 0 0 297.1112869696373 297.1112869696373 26.254019516304226 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [Y{I|L}]P[Y{I|L}]{I|L}P 2.8668 - 30 + NaN NaN 95638.4 NaN 22415 5157 27572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27576 106.89 NaN 136630 35 0 17563 0.327 -1 0 36 566.2976747598004 1130.5807965864008 2 566.2980346679688 MULTI HCD FTMS 0 0 0 27575 61106.73828125 0.6504972751454409 -23 0.24588775634765625 1 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.6061 0 0 866.4334842083359 0 866.4334842083359 0 8.494850021680094 0 0 0 0.8494850021680094 0 0 0 V{M(Oxidation (M))|F} 2.6061 - 20 NaN NaN 97128.4 NaN 22416 5158 27575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27577 106.9 NaN 129150 35 0 19757 0.261 + 13532 KYPENFFLL 9 34 585.8135385759193 1169.6125242186386 2 585.8138427734375 MULTI HCD FTMS 0 0 0 27575 70210.828125 0.5813616096192434 -23 0.24588775634765625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.14443998892849796 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 34.253 0 0 2.9285 0 0 778.3647328107437 0 778.3647328107437 0 33.143265708843046 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.9285 + + 23 NaN NaN 96544.9 NaN 22417 5158 27575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27578 106.9 NaN 23672 35 0 3419.7 0.261 + -1 EQRKWYHC 8 23 624.7843017578125 NaN 0 624.7843017578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))EQRKWYHC(Carbamidomethyl (C))_ REV__ENST00000508364.1_1_4:38807134-38807173:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85821.7 NaN 22418 5158 27575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27580 106.9 NaN 46444 35 0 3632.4 0.411 + 35619 YYIFIPSKF 9 44 589.3181762695312 NaN 0 589.3181762695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 1 {I|L} 1 8 14.292 0 0 1.2146 0 0 326.1261574525353 734.3889254205686 1060.515082873104 0 0 0 0 0 0.7302046884880937 0 0 0 + {I|L} 1.2146 + + 12 + NaN NaN 117890.7 NaN 22419 5159 27579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27582 106.91 NaN 172790 35 0 26062 0.411 + 20880 PIPFCGDYIGL 11 57 597.796940343817 1193.579327754434 2 597.7958984375 MULTI HCD FTMS 0 0 0 27581 40677.50390625 0.37270515793074616 13 -0.1113433837890625 1 Unmodified _PIPFCGDYIGL_ ENSG00000166866|ENST00000300119|MYO1A 8.745405648335112 0.3805662881914433 1 K{I|L}{[VA]|[{I|L}G]} 4 8 23.188 0 0 1.9427 0 0 764.2906529187634 0 764.2906529187634 0 6.989700043360184 0 0 0 1 0 0 0 K{I|L}{[VA]|[{I|L}G]} 1.9427 - 27 + NaN NaN 142378.5 NaN 22420 5160 27581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27584 106.92 NaN 39938 35 0 10323 0.327 -1 MHHGCLGRWA 10 23 620.7766838328106 1239.538814732421 2 620.7763061523438 MULTI HCD FTMS 0 0 0 27583 4300.1728515625 0.07675383445223162 -19 0.20070648193359375 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))HHGC(Carbamidomethyl (C))LGRWA_ nc|ENSG00000128683|Q99259-4|GAD1 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84910.3 NaN 22421 5161 27583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27585 106.92 NaN 70713 35 0 8622 0.261 + 34874 YSDLVLFFL 9 38 558.802507472486 NaN 0 558.8026733398438 PEAK HCD FTMS 0 0 0 27583 11712.21484375 0.35927663620497624 1 -0.01605987548828125 2 Unmodified _YSDLVLFFL_ ENSG00000112159|ENST00000369393|MDN1 21.74664581756881 0.17567436591797916 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 6 26.22 0 0 2.3503 0 0 131.09413343530906 574.2501314752561 705.3442649105652 0 0 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 2.3503 + + 17 + NaN NaN 101209.7 NaN 22422 5161 27583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27586 106.93 NaN 68007 35 0 7489.2 0.261 + 24233 RYFLPPYTF 9 33 602.3135276820917 1202.6125024309833 2 602.31201171875 MULTI HCD FTMS 0 0 0 27583 13452.142578125 0.37828483193326234 -20 0.20992279052734375 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 SQAAT{M(Oxidation (M))|F} 6 7 28.633 0 0 2.3809 0 0 579.3174101958396 0 579.3174101958396 0 15.956837818197796 0 0 0 0.9247425010840047 0 0 0 SQAAT{M(Oxidation (M))|F} 2.3809 - 66 NaN NaN 92012.1 NaN 22423 5161 27583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27587 106.93 NaN 37004 35 0 4514.6 0.261 + 14865 LKKLLMENPY 10 34 624.8551906073104 1247.6958282814207 2 624.7870483398438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LKKLLMENPY_ ENSG00000136982|ENST00000313655|DSCC1 1.1933415558491238 0.46898715808974617 1 Y[HQ] 3 10 5.9421 0 0 0.47625 0 0 801.500284923802 0 801.500284923802 0 0.45757490560674974 0 0 0 0 0 0 0 Y[HQ] 0.47625 - 18 + NaN NaN 91900.5 NaN 22424 5161 27583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27589 106.94 NaN 551250 35 0 118630 0.411 -1 0 52 500.80772917360025 999.6009054140005 2 500.8076171875 MULTI HCD FTMS 0 0 0 27588 139550.078125 0.14927720469899347 10 -0.080718994140625 1 NaN NaN 1 RV{I|L}{I|L}{I|L} 5 -1 51.454 0 0 5.1474 0 0 387.18126113105626 0 387.18126113105626 0 27.01667520279372 0 0 0 1.5 0 0 0 RV{I|L}{I|L}{I|L} 5.1474 - 31 NaN NaN 253167.8 NaN 22425 5162 27588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27591 106.94 NaN 140660 35 0 18138 0.411 -1 0 63 511.7986042108228 1021.5826554884457 2 511.79876708984375 MULTI HCD FTMS 0 0 0 27590 132545.96875 0.6154639438543296 11 -0.08664703369140625 1 NaN NaN 1 {I|L}VA{I|L}DPE 7 -1 64.571 0 0 6.3207 0 0 266.15999037910314 0 266.15999037910314 0 37.135701079416634 0 0 0 1.9489700043360187 0 0 0 {I|L}VA{I|L}DPE 6.3207 - 66 NaN NaN 130214.5 NaN 22426 5163 27590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27593 106.95 NaN 1187100 35 0 281300 0.411 + -1 HLNRQLMIF 9 71 594.3214096557083 1186.6282663782165 2 594.3212890625 MULTI HCD FTMS 0 0 0 27592 411724.03125 0.33219423898112604 -13 0.13936614990234375 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 36.04419817259434 0.08350412372117409 1 YY{I|L}N{I|L}{I|L}E{I|L} 8 -1 84.558 0 0 7.1259 0 0 0 162.05674766494408 162.05674766494408 19.361818737241734 0 0 0 0 2.6861818737241734 1.3010299956639813 0 1.6549471895720984 YY{I|L}N{I|L}{I|L}E{I|L} 7.1259 - 411 NaN NaN 440099.6 NaN 22427 5164 27592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27595 106.96 NaN 260740 35 0 41568 0.411 -1 0 65 605.3122343594841 1208.6099157857682 2 605.3124389648438 MULTI HCD FTMS 0 0 0 27594 113509.6328125 0.7244406055985013 -12 0.12964630126953125 1 NaN NaN 1 YY{I|L}N{I|L}{I|L} 6 -1 77.612 0 0 6.4216 0 0 0 426.16441286467256 426.16441286467256 48.58349385648225 0 0 0 0 2.1237125054200234 2 0 0 YY{I|L}N{I|L}{I|L} 6.4216 - 266 + NaN NaN 154583.9 NaN 22428 5165 27594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27597 106.97 NaN 71002 35 0 9527.4 0.411 -1 0 43 563.302449574103 562.2951731075029 1 563.302978515625 MULTI HCD FTMS 0 0 0 27596 47973.796875 0.8292603579961695 1 -0.00757598876953125 1 NaN NaN 1 VQ{M(Oxidation (M))|F} 3 -1 27.435 0 0 4.8791 0 0 170.08968101941542 0 170.08968101941542 0 10.981362441963327 0 0 0 0 0 0 0.4247425010840047 VQ{M(Oxidation (M))|F} 4.8791 - 20 + NaN NaN 114519.8 NaN 22429 5166 27596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27599 106.97 NaN 88256 35 0 17746 0.327 + 20083 NYIPRFWTF 9 35 622.3169240377382 1242.6192951422763 2 622.3153076171875 MULTI HCD FTMS 0 0 0 27598 47210.921875 0.8008990535525047 -14 0.144744873046875 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 17.11289562659939 0.2125047172822487 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4062573827638 849.4062573827638 37.068671379276346 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 14 NaN NaN 92159.7 NaN 22430 5167 27598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27600 106.98 NaN 39103 35 0 8955 0.261 + 10339 ILPTLVPWYF 10 29 624.8551906073104 1247.6958282814207 2 624.8558959960938 MULTI HCD FTMS 0 0 0 27598 16889.583984375 0.8223373641569092 -9 0.08205413818359375 2 Unmodified _ILPTLVPWYF_ ENSG00000099194|ENST00000370355|SCD 3.5964929083625545 0.45626689593999237 1 V 1 9 11.99 0 0 0.96095 0 0 611.275520693497 534.3313082330686 1145.6068289265656 0 0 0 0 0 0.5 0 0 0 + V 0.96095 + + 9 + NaN NaN 89450.5 NaN 22431 5167 27598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27602 106.98 NaN 140790 35 0 23997 0.327 + 7704 FYLLLGNLL 9 41 533.3208359950802 1064.6271190569603 2 533.3206787109375 MULTI HCD FTMS 0 0 0 27601 29346.4296875 0.2561952356811637 8 -0.06716156005859375 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 53.57557251787612 0.02656881086235134 1 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 44.164 0 0 4.1483 4.1483 89.493 0 0 0 4.762036441594191 37.174706069466055 4.762036441594191 44.16440611282624 0 1.5356668758921828 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 4.1483 + + 78 NaN NaN 103040.2 NaN 22432 5168 27601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27603 106.99 NaN 54076 35 0 4551.4 0.261 -1 0 34 579.2931633233428 578.2858868567428 1 580.2969970703125 MULTI HCD FTMS 0 0 0 27601 17895.15625 0.6353422400183953 41 -0.41663360595703125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92754.7 NaN 22433 5168 27601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27605 106.99 NaN 47568 35 0 4382.8 0.327 -1 0 31 579.2931633233428 578.2858868567428 1 580.2966918945312 MULTI HCD FTMS 0 0 0 27604 9045.4677734375 0.32114655367650047 42 -0.435638427734375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96948.8 NaN 22434 5169 27604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27606 107 NaN 79611 35 0 7967.8 0.261 + 24234 RYFLPPYTF 9 33 602.3135276820917 1202.6125024309833 2 602.8150634765625 MULTI HCD FTMS 0 0 0 27604 12732.8466796875 0.4039381446901658 -25 0.2531585693359375 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.24021115267848145 1 E{I|L}C{[RE]|[WV]}{I|L}Y 7 8 31.564 0 0 2.6246 0 0 278.16319472480626 0 278.16319472480626 0 5.594924611389427 0 0 0 0.5 0 0.7134679910804405 0 E{I|L}C{[RE]|[WV]}{I|L}Y 2.6246 - 33 NaN NaN 102291.5 NaN 22435 5169 27604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27609 107.01 NaN 136610 35 0 15492 0.411 -1 0 59 566.2976747598004 1130.5807965864008 2 566.2974243164062 MULTI HCD FTMS 0 0 0 27608 38714.19140625 0.41212273355706125 -10 0.089447021484375 1 NaN NaN 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 -1 34.253 0 0 3.0296 0 0 719.3655873029312 0 719.3655873029312 0 12.57007180900061 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.0296 - 59 NaN NaN 125279.7 NaN 22436 5171 27608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27613 107.03 NaN 37196 35 0 3734.4 0.411 + 35597 YYIFIPSKF 9 38 589.3189853474124 1176.6234177616248 2 589.3179931640625 MULTI HCD FTMS 0 0 0 27612 9149.744140625 0.4846692976878451 -5 0.03755950927734375 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1639198954644489 1 YY{I|L} 3 6 37.447 0 0 3.1826 0 0 0 734.3880332040816 734.3880332040816 37.447274948966935 0 0 0 0 0.8494850021680094 2 0 0 + YY{I|L} 3.1826 + + 4 + NaN NaN 104046.1 NaN 22437 5174 27612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27615 107.04 NaN 51179 35 0 12311 0.327 + 17659 MAARDGDFLMN 11 28 620.7766838328106 1239.538814732421 2 620.776611328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _MAARDGDFLMN_ REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1 0.9622753412299311 0.4147004537482263 1 M 1 -1 5.4846 0 0 0.44247 0 0 695.2876683474586 410.1933687799438 1105.4810371274025 0 0 0 0 0 0 0 0 0 M 0.44247 + + 3 + NaN NaN 93959.8 NaN 22438 5175 27614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27616 107.04 NaN 65356 35 0 9924.5 0.264 + 28691 TSGPCPRTS 9 41 453.2095144861778 NaN 0 453.209716796875 PEAK HCD FTMS 0 0 0 27614 42843.046875 0.6559942246679528 -32 0.30577850341796875 2 Unmodified _TSGPCPRTS_ REV__ENST00000467148.1_1_20:62201918-62203710:-|nuORF 2.0597508629832335 0.2852655770354268 1 W 1 -1 1.5938 0 0 0.17623 0 0 512.22336749599 203.06905542545158 715.2924229214416 0 0 0 0 0 0 0 0 0 W 0.17623 - 1 + NaN NaN 91138.7 NaN 22439 5175 27614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27617 107.05 NaN 100020 35 0 9714.6 0.261 + 5230 FFDEYFVLL 9 49 596.8000683495062 NaN 0 596.800048828125 PEAK HCD FTMS 0 0 0 27614 4706.7744140625 0.19547367762749818 3 -0.03006744384765625 3 Unmodified _FFDEYFVLL_ ENSG00000205413|ENST00000379958|SAMD9 21.74664581756881 0.17567436591797916 1 {I|L}V{M(Oxidation (M))|F} 3 8 30.005 0 0 2.5181 0 0 131.09343625873095 698.2450045221311 829.3384407808621 0 0 0 0 0 1.3807196863200843 0 0 0 {I|L}V{M(Oxidation (M))|F} 2.5181 - 15 + NaN NaN 91491.9 NaN 22440 5175 27614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27619 107.05 NaN 185690 35 0 30190 0.327 + 13533 KYPENFFLL 9 46 585.8135385759193 1169.6125242186386 2 585.8138427734375 MULTI HCD FTMS 0 0 0 27618 61927.16796875 0.5127710213783175 -5 0.041168212890625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.984 0 0 2.4781 0 0 778.3693714826187 0 778.3693714826187 0 11.025684359364405 0 0 0 0.7302046884880937 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4781 + + 27 NaN NaN 112681.6 NaN 22441 5176 27618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27620 107.05 NaN 55923 35 0 8455.2 0.261 -1 0 38 561.1045532226562 NaN 0 561.1045532226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 C 1 -1 6.9897 0 0 0.62435 0 0 744.3909153791031 269.09238611392817 1013.4833014930314 0 0 0 0 0 0.5 0 0 0 C 0.62435 - 2 + NaN NaN 85250.6 NaN 22442 5176 27618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27622 107.06 NaN 552750 35 0 118310 0.411 -1 0 55 500.80775243057997 999.60095192796 2 500.8076477050781 MULTI HCD FTMS 0 0 0 27621 447052.4375 0.8467404376135469 12 -0.13916015625 1 NaN NaN 1 RV{I|L}{I|L}{I|L} 5 -1 51.454 0 0 5.1474 0 0 387.1764088361344 0 387.1764088361344 0 47.95880017344075 0 0 0 1.5 0 0 0 RV{I|L}{I|L}{I|L} 5.1474 - 40 NaN NaN 260120.2 NaN 22443 5177 27621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27624 107.07 NaN 171810 35 0 22567 0.327 -1 0 42 511.79857593755236 1021.5825989419047 2 511.7986145019531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 {I|L}VA{I|L}DPE 7 -1 47.683 0 0 4.6676 0 0 266.1600514142594 0 266.1600514142594 0 20.688360598214572 0 0 0 0.7742275032520141 0 0 0 {I|L}VA{I|L}DPE 4.6676 - 67 NaN NaN 111763.2 NaN 22444 5178 27623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27625 107.07 NaN 83046 35 0 10459 0.261 + 24235 RYFLPPYTF 9 26 602.3135276820917 1202.6125024309833 2 602.3120727539062 MULTI HCD FTMS 0 0 0 27623 23589.06640625 0.6633431045743952 -3 0.03006744384765625 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.27331982688540024 1 SQ[SG]V{M(Oxidation (M))|F} 6 8 28.633 0 0 2.3809 0 0 579.3167075059844 0 579.3167075059844 0 18.96713777483761 0 0 0 0.9247425010840047 0 0 0 SQ[SG]V{M(Oxidation (M))|F} 2.3809 - 60 NaN NaN 107767.9 NaN 22445 5178 27623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27627 107.08 NaN 453810 35 0 104600 0.327 + -1 HLNRQLMIF 9 57 594.3214096557083 1186.6282663782165 2 594.3213500976562 MULTI HCD FTMS 0 0 0 27626 409846.34375 0.33067925097274303 2 -0.01992034912109375 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 28.486842064014134 0.11819662193267319 1 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6 -1 75.482 0 0 6.3611 0 0 439.209276267775 0 439.209276267775 0 47.69077524932108 0 0 0 2.2614393726401687 0 0 1.6237125054200234 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.3611 - 100 NaN NaN 155843.4 NaN 22446 5179 27626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27628 107.08 NaN 114410 35 0 18947 0.261 -1 0 31 605.3122343594841 1208.6099157857682 2 605.3123168945312 MULTI HCD FTMS 0 0 0 27626 45572.67578125 0.2908537013439905 2 -0.01992034912109375 2 NaN NaN 1 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 6 -1 39.142 0 0 3.2386 0 0 0 426.1630741110838 426.1630741110838 13.925449767853308 0 0 0 0 1.4247425010840047 2 0 0 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3.2386 - 13 + NaN NaN 108518.7 NaN 22447 5179 27626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27629 107.08 NaN 60191 35 0 6701.2 0.261 + 15129 LMLFWFFI 8 35 558.802507472486 NaN 0 558.8018188476562 PEAK HCD FTMS 0 0 0 27626 11394.306640625 0.34952468139843784 18 -0.21401214599609375 3 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 17.086550045450526 0.386433553673079 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.217 0 0 1.8122 0 0 131.09377119321567 687.3364267799108 818.4301979731265 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8122 + + 12 + NaN NaN 84030.9 NaN 22448 5179 27626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27633 107.1 NaN 89234 35 0 15975 0.327 + 34074 YNLFSVSNHY 10 34 622.2911137354149 1242.5676745376297 2 622.3164672851562 MULTI HCD FTMS 0 0 0 27632 3690.194091796875 0.46874264441690194 1 -0.02264404296875 1 Unmodified _YNLFSVSNHY_ ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;ENST00000560379.1_1_15:50790733-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8 3.5964929083625545 0.45626689593999237 1 [YN]{I|L} 3 7 27.447 0 0 2.2089 0 0 0 849.3545288231429 849.3545288231429 7.983324797206279 0 0 0 0 0 1.6989700043360187 0 0 + [YN]{I|L} 2.2089 + + 14 NaN NaN 106774.8 NaN 22449 5182 27632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27634 107.11 NaN 174460 35 0 33058 0.466 + 8201 GQRTLHSY 8 47 481.2465513505063 960.4785497678126 2 481.24554443359375 MULTI HCD FTMS 0 0 0 27632 14902.5048828125 0.13127520525508063 -13 0.11107635498046875 2 Unmodified _GQRTLHSY_ REV__ENSG00000143369|ENST00000369047|ECM1;REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF;REV__nc|ENSG00000143369|Q16610-2|ECM1;REV__nc|ENSG00000143369|Q16610-3|ECM1;REV__nc|ENSG00000143369|Q16610-4|ECM1 3.944395688203298 0.5361403129012058 1 T 1 -1 16.722 0 0 1.741 0 0 167.0633833027187 689.3455904596311 856.4089737623499 0 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 T 1.741 + + 21 + NaN NaN 109542.6 NaN 22450 5182 27632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27635 107.11 NaN 84355 35 0 12282 0.261 + 5619 FLYLLFHL 8 40 533.3089273832195 NaN 0 533.320068359375 PEAK HCD FTMS 0 0 0 27632 11194.8359375 1 0 0 3 Unmodified _FLYLLFHL_ REV__ENST00000579226.5_1_18:3255982-3256117:+|nuORF 6.354104778181461 0.38822285293237185 1 G 1 -1 6.9897 0 0 0.65655 0 0 358.20133757718264 646.3617694460471 1004.5631070232298 0 0 0 0 0 0 0 0 0 G 0.65655 - 11 + NaN NaN 99361.7 NaN 22451 5182 27632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27636 107.12 NaN 47272 35 0 5361.8 0.261 + 3925 EPTFTIETSGI 11 28 597.796940343817 1193.579327754434 2 598.2997436523438 MULTI HCD FTMS 0 0 0 27632 10006.078125 0.14829600242316682 31 -0.34505462646484375 4 Unmodified _EPTFTIETSGI_ REV__ENSG00000137996|ENST00000370128|RTCA;REV__nc|ENSG00000137996|O00442-2|RTCA 2.735195868890462 0.4069250265843076 1 S{[VA]|[{I|L}G]} 3 -1 10.458 0 0 0.87615 0 0 918.4447499583972 0 918.4447499583972 0 7.983324797206281 0 0 0 0 0 0 0 S{[VA]|[{I|L}G]} 0.87615 + + 3 NaN NaN 99973.7 NaN 22452 5182 27632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27637 107.12 NaN 42081 35 0 4427.8 0.261 + 35598 YYIFIPSKF 9 28 589.3189853474124 1176.6234177616248 2 589.3197631835938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.24021115267848145 1 YY{I|L} 3 6 34.705 0 0 2.9495 0 0 0 734.3893167838298 734.3893167838298 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 + YY{I|L} 2.9495 + + 2 + NaN NaN 93954.3 NaN 22453 5182 27632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27639 107.13 NaN 108900 35 0 17053 0.327 -1 0 45 422.9012927595987 1265.682048878996 3 422.90155029296875 MULTI HCD FTMS 0 0 0 27638 14604.6025390625 0.35487713536893084 10 -0.1222991943359375 1 NaN NaN 1 Y 1 -1 2.2185 0 0 0.17528 0 0 716.4148502479399 383.18671594791255 1099.6015661958525 0 0 0 0 0 0 0 0 0 Y 0.17528 - 10 + NaN NaN 123121.7 NaN 22454 5183 27638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27640 107.13 NaN 65003 35 0 7767.6 0.261 + 7705 FYLLLGNLL 9 34 533.3208359950802 1064.6271190569603 2 533.822509765625 MULTI HCD FTMS 0 0 0 27638 14450.603515625 0.20676152715001042 25 -0.26650238037109375 2 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 7.910154910731844 0.2910521888787154 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103886 NaN 22455 5183 27638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27641 107.13 NaN 58969 35 0 9489.6 0.261 + 3458 EFVPFLLNF 9 26 563.3028360589606 NaN 0 563.3023681640625 PEAK HCD FTMS 0 0 0 27638 26192.138671875 0.9342621120630348 -1 0.02264404296875 3 Unmodified _EFVPFLLNF_ ENSG00000140326|ENST00000356231|CDAN1;nc|ENSG00000140326|Q8IWY9-1|CDAN1 14.838274106304384 0.2220448417561729 1 QV 2 8 24.464 0 0 2.1754 0 0 165.07973312273162 729.3594248166658 894.4391579393973 0 0 0 0 0 1.3494850021680094 0 0 0 QV 2.1754 - 7 + NaN NaN 92957.6 NaN 22456 5183 27638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27642 107.14 NaN 41246 35 0 8917.2 0.261 + 10340 ILPTLVPWYF 10 27 624.8551906073104 1247.6958282814207 2 624.853759765625 MULTI HCD FTMS 0 0 0 27638 17121.146484375 0.8336119163343784 5 -0.05340576171875 4 Unmodified _ILPTLVPWYF_ ENSG00000099194|ENST00000370355|SCD 3.5964929083625545 0.45626689593999237 1 V 1 9 11.99 0 0 0.96095 0 0 611.2740866841606 534.3327120416624 1145.606798725823 0 0 0 0 0 0.5 0 0 0 + V 0.96095 + + 7 + NaN NaN 93917.1 NaN 22457 5183 27638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27644 107.14 NaN 194990 35 0 22182 0.327 -1 0 51 566.2976747598004 1130.5807965864008 2 566.2974853515625 MULTI HCD FTMS 0 0 0 27643 73542.1484375 0.7828754816981323 3 -0.027618408203125 1 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 29.024 0 0 2.5672 0 0 866.4345980802074 0 866.4345980802074 0 -0.528871982441359 -0.528871982441359 0 0 0.805462187404089 0 0 0 V{M(Oxidation (M))|F} 2.5672 - 40 NaN NaN 112999.5 NaN 22458 5184 27643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27645 107.15 NaN 221030 35 0 39952 0.261 + 19166 NHQITVLH 8 46 481.26207807778286 NaN 0 481.2469177246094 PEAK HCD FTMS 0 0 0 27643 6355.86328125 0.7392277979648191 -1 0.01627349853515625 2 Unmodified _NHQITVLH_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 7.910154910731844 0.38822285293237185 1 T 1 7 8.2268 0 0 0.85651 0 0 167.09431938078052 689.3455716968432 856.4398910776238 0 0 0 0 0 0 0 0.4247425010840047 0 + T 0.85651 + + 4 + NaN NaN 115400.4 NaN 22459 5184 27643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27646 107.15 NaN 31402 35 0 9786.6 0.261 + 10341 ILPTLVPWYF 10 17 624.8551906073104 1247.6958282814207 2 624.8555908203125 MULTI HCD FTMS 0 0 0 27643 13577.7958984375 0.6610896337358642 6 -0.0695648193359375 3 Unmodified _ILPTLVPWYF_ ENSG00000099194|ENST00000370355|SCD 1.6526216038709556 0.46655611578153744 1 Y[HQ] 3 10 7.4473 0 0 0.59688 0 0 801.5020854609114 0 801.5020854609114 0 2.8431811792050627 0 0 0 0 0 0 0 Y[HQ] 0.59688 - 11 + NaN NaN 92117 NaN 22460 5184 27643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27648 107.16 NaN 83340 35 0 24071 0.327 + -1 NIGCKRLIL 9 22 543.8261851223488 1085.6378173114974 2 543.8255004882812 MULTI HCD FTMS 0 0 0 27647 11522.7744140625 0.016719717036229573 -24 0.23595428466796875 1 Carbamidomethyl (C) _NIGC(Carbamidomethyl (C))KRLIL_ REV__ENST00000399215.5_1_21:37431931-37432327:-|nuORF 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 41.186 0 0 3.7937 0 0 581.3062302074255 0 581.3062302074255 0 41.18562527100117 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.7937 - 9 NaN NaN 111936.6 NaN 22461 5185 27647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27650 107.16 NaN 57282 35 0 7443.7 0.411 + 24236 RYFLPPYTF 9 38 602.3135276820917 1202.6125024309833 2 602.3137817382812 MULTI HCD FTMS 0 0 0 27649 15063.43359375 0.4235956028756141 5 -0.06562042236328125 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 30.713 0 0 2.5539 0 0 579.3170632007525 0 579.3170632007525 0 20.536049848239344 0 0 0 0.8494850021680094 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.5539 + + 20 NaN NaN 99689.8 NaN 22462 5186 27649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27652 107.17 NaN 114620 35 0 12510 0.327 + 13534 KYPENFFLL 9 40 585.8135385759193 1169.6125242186386 2 585.8135375976562 MULTI HCD FTMS 0 0 0 27651 71033.2109375 0.5881711261620054 6 -0.07840728759765625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 20.41453444215458 0.18397929046831515 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 33.94 0 0 2.9018 0 0 778.3671837253332 0 778.3671837253332 0 26.95046257204389 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.9018 + + 17 NaN NaN 104325.8 NaN 22463 5187 27651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27653 107.17 NaN 56764 35 0 17036 0.261 + 28642 TRLTANSESA 10 32 525.2651531433831 1048.5157533535662 2 525.7642211914062 MULTI HCD FTMS 0 0 0 27651 3656.016845703125 0.2227088290170038 -5 0.06653594970703125 2 Unmodified _TRLTANSESA_ REV__ENST00000472823.5_1_6:29595320-29596997:-|nuORF 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 92346.6 NaN 22464 5187 27651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27655 107.18 NaN 254440 35 0 54658 0.326 -1 0 36 500.80775243057997 999.60095192796 2 500.8076171875 MULTI HCD FTMS 0 0 0 27654 291692 0.5524797339425551 23 -0.24851226806640625 1 NaN NaN 1 V{I|L}{I|L}{I|L} 4 -1 46.938 0 0 4.6957 0 0 543.2697010724625 0 543.2697010724625 0 46.938200260161125 0 0 0 1.5 0 0 0 V{I|L}{I|L}{I|L} 4.6957 - 15 NaN NaN 133010.1 NaN 22465 5188 27654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27656 107.18 NaN 61918 35 0 19263 0.261 -1 CLHEVAYWY 9 23 620.7766838328106 1239.538814732421 2 620.7770385742188 MULTI HCD FTMS 0 0 0 27654 19663.95703125 0.35098219414690474 5 -0.0688934326171875 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LHEVAYWY_ ENSG00000185010|ENST00000360256|F8;F8|p.I1213Ffs*5|1|0.47|ENSG00000185010|chrX:154930153-154930153|T/-|frameshift_variant 0.6014990680409731 0.3464572424761564 1 G 1 -1 2.4743 0 0 0.19961 0 0 637.7614232302711 541.7277926080686 1179.4892158383398 0 0 0 0 0 0 0 0 0 G 0.19961 - 1 + NaN NaN 97450.9 NaN 22466 5188 27654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27657 107.19 NaN 30428 35 0 3055.8 0.261 + 30152 VGTYIIDLLTF 11 21 627.8539428710938 NaN 0 627.8539428710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VGTYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1 4.897010918128616 0.3282287337590871 1 Q 1 11 1.9897 0 0 0.15871 0 0 626.7226792951186 495.8972262018188 1122.6199054969375 0 0 0 0 0 0 0 0 0 Q 0.15871 - 1 + NaN NaN 114454.6 NaN 22467 5188 27654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27658 107.19 NaN 59210 35 0 12984 0.261 + -1 CSLVCVVTEK 10 29 597.796940343817 1193.579327754434 2 598.3007202148438 MULTI HCD FTMS 0 0 0 27654 12658.59765625 0.18760791243623673 36 -0.38266754150390625 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))SLVC(Carbamidomethyl (C))VVTEK_ REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF 1.4819007175156935 0.4674597685733628 1 M 1 -1 3.9794 0 0 0.3334 0 0 632.2112380100965 427.30317102603755 1059.514409036134 0 0 0 0 0 0 0 0 0 M 0.3334 - 1 + NaN NaN 104666.2 NaN 22468 5188 27654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27659 107.19 NaN 33661 35 0 5794.8 0.261 -1 VWIGVRLHS 9 20 554.8167102058271 1107.6188674784541 2 554.8164672851562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VWIGVRLHS_ ENST00000564541.1_1_6:96025158-96025221:-|nuORF 0.6014990680409731 0.3464572424761564 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83790.6 NaN 22469 5188 27654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27661 107.2 NaN 98792 35 0 16103 0.327 + 7092 FRGRNFLL 8 31 511.79857593755236 1021.5825989419047 2 511.7987365722656 MULTI HCD FTMS 0 0 0 27660 35123.3671875 0.27537097029965196 2 -0.02939605712890625 1 Unmodified _FRGRNFLL_ ENST00000511203.1_1_4:100869836-100870579:-|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}V[W{I|L}]PE 6 8 24.13 0 0 2.362 0 0 266.16020400215 0 266.16020400215 0 6.170912423450403 0 0 0 0.5 0 0 0 {I|L}V[W{I|L}]PE 2.362 - 16 NaN NaN 94636 NaN 22470 5189 27660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27662 107.2 NaN 184370 35 0 50206 0.261 -1 0 32 579.2931633233428 578.2858868567428 1 579.2926635742188 MULTI HCD FTMS 0 0 0 27660 25001 0.47950408075364837 6 -0.06622314453125 2 NaN NaN 1 [WK][{M(Oxidation (M))|F}V] 4 -1 + 0 0 0 0 0 39.275 0 0 0 0 0 0 0 0 0 0 0 0 [WK][{M(Oxidation (M))|F}V] 0 - 2 + NaN NaN 112907.7 NaN 22471 5189 27660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27663 107.21 NaN 78095 35 0 6634.3 0.261 + -1 CYICRPMN 8 39 508.2119640168176 NaN 0 507.81512451171875 PEAK HCD FTMS 0 0 0 27660 5160.154296875 0.3522864022864223 17 -0.176971435546875 3 Oxidation (M) _CYICRPM(Oxidation (M))N_ REV__ENSG00000140575|ENST00000268182|IQGAP1 0.6903765706972694 0.38822285293237185 1 A 1 -1 5.4846 0 0 0.54066 0 0 793.4552257857853 146.89605127506096 940.3512770608462 0 0 0 0 0 0 0 0 0 A 0.54066 - 2 + NaN NaN 93224.9 NaN 22472 5189 27660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27665 107.21 NaN 478030 35 0 104860 0.327 + -1 HLNRQLMIF 9 56 594.3214096557083 1186.6282663782165 2 594.3214721679688 MULTI HCD FTMS 0 0 0 27664 424218.78125 0.3422754673099848 13 -0.14041900634765625 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 21.74664581756881 0.17247014374749275 1 {I|L}N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 7 -1 72.339 0 0 6.0962 0 0 326.1264820783219 0 326.1264820783219 0 61.369638510539914 0 0 0 2.2614393726401687 0 0 1.274227503252014 {I|L}N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.0962 - 139 NaN NaN 163259.1 NaN 22473 5190 27664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27666 107.22 NaN 88750 35 0 17121 0.261 -1 0 29 605.3122343594841 1208.6099157857682 2 605.3118896484375 MULTI HCD FTMS 0 0 0 27664 50110.53125 0.3198151796119187 13 -0.14041900634765625 2 NaN NaN 1 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 6 -1 41.171 0 0 3.4065 0 0 0 426.16404138736567 426.16404138736567 20.20181229336984 0 0 0 0 0.8494850021680094 2 0 0 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3.4065 - 7 + NaN NaN 98007.8 NaN 22474 5190 27664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27667 107.22 NaN 62775 35 0 5355.2 0.264 + -1 VEEAELSS 8 38 453.2095144861778 NaN 0 453.20941162109375 PEAK HCD FTMS 0 0 0 27664 29706.068359375 0.4548464850830339 -17 0.1886749267578125 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VEEAELSS_ REV__ENST00000484924.5_1_22:29924318-29925178:-|nuORF 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108638.2 NaN 22475 5190 27664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27668 107.22 NaN 174820 35 0 60112 0.261 + 21085 PNCIHAVMGPR 11 31 597.7958435424079 NaN 0 597.7958374023438 PEAK HCD FTMS 0 0 0 27664 4213.15234375 0.3484519847404634 1 -0.016357421875 4 Unmodified _PNCIHAVMGPR_ REV__ENST00000597864.1_1_19:58123876-58123951:+|nuORF 1.1933415558491238 0.338734977139133 1 M 1 -1 5.4846 0 0 0.45951 0 0 633.2120825311017 426.3009021716793 1059.512984702781 0 0 0 0 0 0 0 0 0 M 0.45951 + + 3 + NaN NaN 110818.5 NaN 22476 5190 27664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27670 107.23 NaN 79179 35 0 18896 0.327 + 20084 NYIPRFWTF 9 33 622.3169240377382 1242.6192951422763 2 622.3165893554688 MULTI HCD FTMS 0 0 0 27669 56924.515625 0.9656831274912965 10 -0.1070098876953125 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 39.705 0 0 3.1953 0 0 0 849.4052340652014 849.4052340652014 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 + [YN]{I|L} 3.1953 + + 9 + NaN NaN 93343.9 NaN 22477 5191 27669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27671 107.23 NaN 34259 35 0 5711.3 0.261 -1 IVYRMLLQQ 9 24 590.3320922851562 NaN 0 590.3320922851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _IVYRM(Oxidation (M))LLQQ_ ENSG00000066813|ENST00000329697|ACSM2B;ENSG00000183747|ENST00000573854|ACSM2A 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86982.5 NaN 22478 5191 27669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27672 107.24 NaN 30649 35 0 4293.6 0.261 + -1 YCSYKASALT 10 24 582.2736953102042 NaN 0 582.27294921875 PEAK HCD FTMS 0 0 0 27669 11290.5 1 0 0 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))SYKASALT_ REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89779 NaN 22479 5191 27669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27675 107.25 NaN 78024 35 0 12504 0.327 -1 0 41 467.099845675043 466.092569208443 1 467.10162353515625 MULTI HCD FTMS 0 0 0 27674 38392.00390625 0.8207070101877413 -13 0.1588287353515625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99941.3 NaN 22480 5193 27674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27676 107.25 NaN 51666 35 0 7054.6 0.261 + 24237 RYFLPPYTF 9 20 602.3135276820917 1202.6125024309833 2 602.8158569335938 MULTI HCD FTMS 0 0 0 27674 9876.2568359375 0.313315393105014 -2 0.02010345458984375 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.27331982688540024 1 T{M(Oxidation (M))|F} 2 7 20.969 0 0 1.7436 0 0 936.4852817837818 0 936.4852817837818 0 20.969100130080562 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.7436 + + 2 NaN NaN 88523.5 NaN 22481 5193 27674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27678 107.26 NaN 61037 35 0 8003.1 0.411 + 24238 RYFLPPYTF 9 35 602.3135276820917 1202.6125024309833 2 602.8146362304688 MULTI HCD FTMS 0 0 0 27677 19034.740234375 0.6038600674583318 -1 0.0091705322265625 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 1 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 4 26.695 0 0 2.2197 0 0 579.316584220466 0 579.316584220466 0 26.694699959806982 0 0 0 0.9247425010840047 0 0 0 + P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.2197 + + 11 NaN NaN 104075.7 NaN 22482 5194 27677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27680 107.27 NaN 173170 35 0 24153 0.327 -1 0 49 566.2976747598004 1130.5807965864008 2 566.2976684570312 MULTI HCD FTMS 0 0 0 27679 76765.8671875 0.8171928143146846 14 -0.13442230224609375 1 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.7392 0 0 866.4339898010477 0 866.4339898010477 0 10 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.7392 - 30 + NaN NaN 110125.4 NaN 22483 5195 27679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27681 107.27 NaN 229300 35 0 41086 0.261 + 8202 GQRTLHSY 8 47 481.2465513505063 960.4785497678126 2 481.24652099609375 MULTI HCD FTMS 0 0 0 27679 113521.09375 1 0 0 2 Unmodified _GQRTLHSY_ REV__ENSG00000143369|ENST00000369047|ECM1;REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF;REV__nc|ENSG00000143369|Q16610-2|ECM1;REV__nc|ENSG00000143369|Q16610-3|ECM1;REV__nc|ENSG00000143369|Q16610-4|ECM1 7.289230182591677 0.5311777711368266 1 T 1 -1 17.034 0 0 1.7735 0 0 692.3683263640523 164.0394552124482 856.4077815765005 0 0 0 0 0 0.8807196863200843 0 0.4247425010840047 0 T 1.7735 + + 21 NaN NaN 118184.6 NaN 22484 5195 27679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27682 107.27 NaN 60280 35 0 9183.1 0.261 -1 YYMRRRHL 8 26 605.814998992365 NaN 0 605.8146362304688 PEAK HCD FTMS 0 0 0 27679 17995.763671875 0.8316348920470453 -1 0.0075531005859375 3 Oxidation (M) _YYM(Oxidation (M))RRRHL_ ENSG00000188803|ENST00000441885|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;nc|ENSG00000188803|Q6ZSJ9|SHISA6 2.8892196856762586 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.57784 0 0 327.13266110543935 766.3726290338499 1093.5052901392892 0 0 0 0 0 0 0 0 0 {I|L} 0.57784 + + 6 + NaN NaN 97259.1 NaN 22485 5195 27679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27683 107.28 NaN 48209 35 0 6235.2 0.261 + 15130 LMLFWFFI 8 37 558.8025662707645 NaN 0 558.8031005859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 17.086550045450526 0.386433553673079 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.217 0 0 1.8122 0 0 131.09571984446012 687.3356417291624 818.4313615736226 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8122 + + 11 + NaN NaN 84181.8 NaN 22486 5195 27679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27685 107.28 NaN 918200 35 0 349280 0.327 + -1 NIGCKRLIL 9 27 543.8261851223488 1085.6378173114974 2 543.8261108398438 MULTI HCD FTMS 0 0 0 27684 292482.4375 0.4243963664773848 -13 0.1551361083984375 1 Carbamidomethyl (C) _NIGC(Carbamidomethyl (C))KRLIL_ REV__ENST00000399215.5_1_21:37431931-37432327:-|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5 -1 52.519 0 0 4.8376 0 0 468.22163588691564 0 468.22163588691564 0 52.51857202580155 0 0 0 1.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.8376 - 26 NaN NaN 217424.3 NaN 22487 5196 27684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27686 107.29 NaN 45930 35 0 3797.9 0.261 + 35620 YYIFIPSKF 9 36 589.3196622835713 NaN 0 589.3203125 PEAK HCD FTMS 0 0 0 27684 10897.1337890625 0.41858877293126195 -7 0.08233642578125 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.22786006501039813 1 {I|L} 1 8 11.99 0 0 1.019 0 0 326.1293122412912 734.3895968072874 1060.5189090485785 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.019 + + 3 + NaN NaN 103414.1 NaN 22488 5196 27684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27688 107.29 NaN 102750 35 0 11074 0.327 + 13535 KYPENFFLL 9 36 585.8135385759193 1169.6125242186386 2 585.8132934570312 MULTI HCD FTMS 0 0 0 27687 47091.90234375 0.38993165125261403 16 -0.15767669677734375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.367967674025 0 778.367967674025 0 10.228787452803374 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 17 NaN NaN 101269.1 NaN 22489 5197 27687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27689 107.3 NaN 108170 35 0 21792 0.261 + 35452 YYEPTLLILF 10 31 636.3504086754233 1270.6862644176465 2 636.8525390625 MULTI HCD FTMS 0 0 0 27687 4311.953125 0.21612386721263138 1 -0.0094146728515625 2 Unmodified _YYEPTLLILF_ ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF 29.081581746732265 0.240155558137004 1 {I|L}{I|L}{I|L}{M(Oxidation (M))|F} 4 6 45.745 0 0 3.6001 0 0 766.3558651594464 0 766.3558651594464 0 39.776296993281406 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}{I|L}{M(Oxidation (M))|F} 3.6001 + + 25 NaN NaN 100273.7 NaN 22490 5197 27687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27691 107.3 NaN 210870 35 0 40609 0.327 -1 0 36 500.80775243057997 999.60095192796 2 500.8077697753906 MULTI HCD FTMS 0 0 0 27690 66049.8984375 0.12510192365811468 33 -0.32096099853515625 1 NaN NaN 1 AV{I|L}{I|L}{I|L} 5 -1 47.959 0 0 4.7978 0 0 472.2325916974625 0 472.2325916974625 0 47.95880017344075 0 0 0 1.5 0 0 0 AV{I|L}{I|L}{I|L} 4.7978 - 24 NaN NaN 109418.6 NaN 22491 5198 27690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27692 107.3 NaN 73556 35 0 18837 0.261 + 20085 NYIPRFWTF 9 26 622.3169240377382 1242.6192951422763 2 622.3186645507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 24.020572477871973 0.15282392193088168 1 [YN]{I|L}G 4 6 42.92 0 0 3.454 0 0 0 792.383613339795 792.383613339795 39.820618910682484 0 0 0 0 1 1.3979400086720375 0 0.4247425010840047 [YN]{I|L}G 3.454 - 14 NaN NaN 95701.3 NaN 22492 5198 27690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27693 107.31 NaN 76712 35 0 11233 0.261 + 24239 RYFLPPYTF 9 23 602.3135276820917 1202.6125024309833 2 602.313720703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.24021115267848145 1 T{M(Oxidation (M))|F} 2 7 20.969 0 0 1.7436 0 0 936.4787637702677 0 936.4787637702677 0 20.969100130080562 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.7436 + + 5 NaN NaN 96915.3 NaN 22493 5198 27690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27695 107.31 NaN 123250 35 0 28130 0.327 + 33679 YKLLSEKEKE 10 43 422.901576566421 NaN 0 422.901611328125 PEAK HCD FTMS 0 0 0 27694 33021.0859375 0.48986355279632104 -11 0.13347625732421875 1 Unmodified _YKLLSEKEKE_ ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 0.5631705045366581 0.3397022931312153 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114269.9 NaN 22494 5199 27694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27696 107.32 NaN 68419 35 0 13814 0.261 + 20086 NYIPRFWTF 9 34 622.3169240377382 1242.6192951422763 2 622.81787109375 MULTI HCD FTMS 0 0 0 27694 25936.66015625 0.5666227889581782 8 -0.070281982421875 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 8.745405648335112 0.2847203663274469 1 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 7 20.458 0 0 1.6463 0 0 852.4290069554573 0 852.4290069554573 0 20.457574905606748 0 0 0 1 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.6463 - 11 + NaN NaN 97328.6 NaN 22495 5199 27694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27698 107.32 NaN 86336 35 0 22005 0.327 + 10569 IPKSTLSYIS 10 30 554.8167102058271 1107.6188674784541 2 554.8164672851562 MULTI HCD FTMS 0 0 0 27697 26784.65625 0.3032181165527282 -9 0.09433746337890625 1 Unmodified _IPKSTLSYIS_ REV__ENSG00000018699|ENST00000317907|TTC27 10.799506525563784 0.4100970765206026 1 {I|L}P 2 -1 20.969 0 0 1.8932 0 0 0 894.4568157576687 894.4568157576687 15.440228147639203 0 0 0 0 0 0 0 0 {I|L}P 1.8932 + + 4 + NaN NaN 104299.5 NaN 22496 5200 27697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27699 107.33 NaN 68751 35 0 10909 0.261 + 7093 FRGRNFLL 8 35 511.79857593755236 1021.5825989419047 2 511.7987365722656 MULTI HCD FTMS 0 0 0 27697 14371.2666015625 0.11267227334387378 12 -0.11821746826171875 2 Unmodified _FRGRNFLL_ ENST00000511203.1_1_4:100869836-100870579:-|nuORF 8.593279151180031 0.5292430274356741 1 {I|L}VW{I|L}PE 6 8 32.74 0 0 3.2048 0 0 266.1610584943375 0 266.1610584943375 0 8.27623146104628 0 0 0 0 0 0 0 {I|L}VW{I|L}PE 3.2048 - 34 NaN NaN 90544.5 NaN 22497 5200 27697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27700 107.33 NaN 83022 35 0 18853 0.261 -1 YPTVILCLF 9 31 563.3026123046875 NaN 0 563.3026123046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _YPTVILC(Carbamidomethyl (C))LF_ ENSG00000135917|ENST00000644224|SLC19A3;ENST00000477697.1_1_2:228566878-228582713:-|nuORF 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109807.2 NaN 22498 5200 27697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27702 107.34 NaN 143010 35 0 43027 0.411 -1 0 46 467.099845675043 466.092569208443 1 467.10205078125 MULTI HCD FTMS 0 0 0 27701 37787.0390625 0.8077746587169724 -5 0.05406951904296875 1 NaN NaN 1 D 1 -1 1.5938 0 0 0.34195 0 0 223.9482038293399 124.0985354059203 348.0467392352602 0 0 0 0 0 0 0 0 0 D 0.34195 - 2 + NaN NaN 128890 NaN 22499 5201 27701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27704 107.34 NaN 155670 35 0 13522 0.327 + 23377 RKRRRWNKKSG 11 54 491.299405777737 1470.876387933411 3 491.29925537109375 MULTI HCD FTMS 0 0 0 27703 45957.44140625 0.11428818862269051 -16 0.18033599853515625 1 Unmodified _RKRRRWNKKSG_ REV__nc|ENSG00000137309|P17096-3|HMGA1 0.09484139111097674 0.41850472438158626 1 G 1 -1 3.0989 0 0 0.21069 0 0 867.5167210406361 543.3037203424436 1410.8204413830797 0 0 0 0 0 0 0 0 0 G 0.21069 + + 3 + NaN NaN 118586 NaN 22500 5202 27703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27705 107.35 NaN 137580 35 0 35555 0.261 -1 IPLRTHTSNC 10 37 599.8009033203125 NaN 0 599.8009033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _IPLRTHTSNC(Carbamidomethyl (C))_ ENST00000530908.5_1_21:37444388-37445177:+|nuORF 1.4819007175156935 0.33891598740166873 1 M 1 -1 2.4743 0 0 0.20713 0 0 632.1690352521499 428.30793176822505 1060.476967020375 0 0 0 0 0 0 0 0 0 M 0.20713 - 1 + NaN NaN 123910.8 NaN 22501 5202 27703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27707 107.35 NaN 87099 35 0 22131 0.327 + 20087 NYIPRFWTF 9 30 622.3169240377382 1242.6192951422763 2 622.3167724609375 MULTI HCD FTMS 0 0 0 27706 14158.4033203125 0.24018704504598112 21 -0.20981597900390625 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 17.11289562659939 0.2125047172822487 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4071858055792 849.4071858055792 26.989700043360187 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 8 NaN NaN 101137.5 NaN 22502 5203 27706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27708 107.36 NaN 102420 35 0 16880 0.261 + 16179 LPVGSPPESII 11 40 554.8167102058271 1107.6188674784541 2 555.31787109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LPVGSPPESII_ ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN 4.897010918128616 0.3974440401582579 1 {I|L}P 2 9 20.969 0 0 1.8932 0 0 0 894.4613634476062 894.4613634476062 13.979400086720375 0 0 0 0 0 0 0 0 + {I|L}P 1.8932 + + 6 + NaN NaN 100461.9 NaN 22503 5203 27706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27711 107.37 NaN 130600 35 0 13788 0.411 + 23225 RFWKLILLTWL 11 84 496.9748530783172 1487.9027298351516 3 496.9748229980469 MULTI HCD FTMS 0 0 0 27710 52419.9921875 0.15499414142681597 -13 0.12744903564453125 1 Unmodified _RFWKLILLTWL_ ENST00000465952.5_1_13:31205167-31205455:+|nuORF 0.09484139111097674 0.41850472438158626 1 A 1 11 5.4846 0 0 0.36861 0 0 765.4701259306579 648.3812960260374 1413.8514219566953 0 0 0 0 0 0.5 0 0 0 A 0.36861 - 8 + NaN NaN 131241.5 NaN 22504 5205 27710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27713 107.38 NaN 72419 35 0 14216 0.411 -1 MRVRWLRF 8 48 590.3321887229256 1178.649824512651 2 590.3323974609375 MULTI HCD FTMS 0 0 0 27712 33883.8671875 0.03279475541000592 -26 0.2863006591796875 1 Oxidation (M) _M(Oxidation (M))RVRWLRF_ ENST00000531894.5_1_16:70011782-70023933:-|nuORF 4.75600775471527 0.5349361699807423 1 {M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 5 -1 30.758 0 0 2.6096 0 0 500.2648268912216 0 500.2648268912216 0 25.273109370204452 0 0 0 1.305462187404089 0 0 0 {M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 2.6096 - 15 NaN NaN 101732.5 NaN 22505 5206 27712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27715 107.38 NaN 160330 35 0 23666 0.327 + -1 HLNRQLMIF 9 46 594.3214096557083 1186.6282663782165 2 594.3211059570312 MULTI HCD FTMS 0 0 0 27714 31570.94921875 0.02547261430865151 30 -0.2782745361328125 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 11.640296217721598 0.25978676193971967 1 E{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}HH{M(Oxidation (M))|F} 7 -1 28.957 0 0 2.4403 0 0 278.16267592597814 0 278.16267592597814 0 23.895388402139446 0 0 0 1 0 0.3494850021680094 0.4247425010840047 E{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}HH{M(Oxidation (M))|F} 2.4403 - 36 NaN NaN 114488.6 NaN 22506 5207 27714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27716 107.39 NaN 134780 35 0 18344 0.261 -1 0 42 566.2976747598004 1130.5807965864008 2 566.29736328125 MULTI HCD FTMS 0 0 0 27714 54933.38671875 0.5847803266898024 26 -0.25371551513671875 2 NaN NaN 1 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.1351 0 0 719.3687000959 0 719.3687000959 0 14.47621246364342 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.1351 - 56 NaN NaN 98631.3 NaN 22507 5207 27714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27719 107.4 NaN 1740100 35 0 921930 0.327 + -1 NIGCKRLIL 9 42 543.8261851223488 1085.6378173114974 2 543.8260498046875 MULTI HCD FTMS 0 0 0 27718 689172.8125 1 0 0 1 Carbamidomethyl (C) _NIGC(Carbamidomethyl (C))KRLIL_ REV__ENST00000399215.5_1_21:37431931-37432327:-|nuORF 11.640296217721598 0.25978676193971967 1 {I|L}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5 -1 47.691 0 0 4.3929 0 0 468.22346694160314 0 468.22346694160314 0 47.69077524932108 0 0 0 1.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.3929 - 30 NaN NaN 348845.3 NaN 22508 5209 27718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27720 107.4 NaN 89490 35 0 22283 0.261 -1 0 36 529.3591081659781 528.3518316993781 1 529.3584594726562 MULTI HCD FTMS 0 0 0 27718 18929.341796875 0.06051597995718098 85 -0.6354446411132812 2 NaN NaN 1 D 1 -1 0.71334 0 0 0.13501 0 0 124.02509327339995 286.2861422174438 410.3112354908437 0 0 0 0 0 0 0 0 0 D 0.13501 - 1 + NaN NaN 99209.1 NaN 22509 5209 27718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27722 107.41 NaN 102670 35 0 12309 0.327 + 13536 KYPENFFLL 9 36 585.8135385759193 1169.6125242186386 2 585.8135375976562 MULTI HCD FTMS 0 0 0 27721 62236.765625 0.5153345603163771 29 -0.2647857666015625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 1 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.445 0 0 3.0305 0 0 778.3688221662125 0 778.3688221662125 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0305 + + 27 NaN NaN 97832.2 NaN 22510 5210 27721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27723 107.41 NaN 82522 35 0 7264.9 0.261 + -1 LRRCLALL 8 37 507.8155688604513 NaN 0 507.8157043457031 PEAK HCD FTMS 0 0 0 27721 17380.423828125 0.8884944917752043 1 -0.0192718505859375 2 Carbamidomethyl (C) _LRRC(Carbamidomethyl (C))LALL_ REV__ENST00000534054.1_1_11:67397109-67397382:-|nuORF 2.302733041254933 0.38822285293237185 1 {I|L} 1 -1 6.9897 0 0 0.68958 0 0 131.0926722894589 766.4146822565061 897.507354545965 0 0 0 0 0 0 0 0 0 {I|L} 0.68958 + + 1 + NaN NaN 96910.7 NaN 22511 5210 27721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27724 107.42 NaN 49258 35 0 6652.1 0.261 + 16897 LYFLLGLLN 9 25 533.3208407191469 NaN 0 533.3209838867188 PEAK HCD FTMS 0 0 0 27721 11648.97265625 0.6418822256189859 1 -0.0192718505859375 3 Unmodified _LYFLLGLLN_ REV__ENSG00000124564|ENST00000397060|SLC17A3;REV__nc|ENSG00000124564|O00476|SLC17A3 8.593279151180031 0.2536050107310812 1 G 1 -1 9.6041 0 0 0.90211 0 0 358.22266180763114 646.3612892169133 1004.5839510245444 0 0 0 0 0 0.5 0 0 0 G 0.90211 + + 1 + NaN NaN 88344.3 NaN 22512 5210 27721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27725 107.42 NaN 32966 35 0 5474.9 0.261 + -1 YWRRCLEK 8 23 605.8137817382812 NaN 0 605.8137817382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YWRRC(Carbamidomethyl (C))LEK_ REV__ENSG00000076043|ENST00000265881|REXO2;REV__ENST00000538403.5_1_11:114314877-114320694:+|nuORF;REV__ENST00000538791.3_1_11:114315223-114320694:+|nuORF;REV__ENST00000539788.5_1_11:114314891-114320694:+|nuORF;REV__ENST00000543131.5_1_11:114310234-114320694:+|nuORF;REV__nc|ENSG00000076043|Q9Y3B8-2|REXO2;REV__nc|ENSG00000076043|Q9Y3B8-3|REXO2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94506 NaN 22513 5210 27721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27726 107.42 NaN 82039 35 0 41549 0.261 -1 MFLECILFI 9 30 601.3008833068722 NaN 0 601.3216552734375 PEAK HCD FTMS 0 0 0 27721 6222.43310546875 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))FLEC(Carbamidomethyl (C))ILFI_ ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257|PTPA 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97161.6 NaN 22514 5210 27721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27728 107.43 NaN 136720 35 0 23580 0.327 -1 0 30 500.80775243057997 999.60095192796 2 500.8074645996094 MULTI HCD FTMS 0 0 0 27727 13363.814453125 0.02531175573385685 46 -0.35904693603515625 1 NaN NaN 1 RV{I|L}{I|L}{I|L} 5 -1 46.454 0 0 4.6472 0 0 387.179002830275 0 387.179002830275 0 42.47425010840047 0 0 0 1 0 0 0 RV{I|L}{I|L}{I|L} 4.6472 - 16 NaN NaN 106691.5 NaN 22515 5211 27727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27729 107.43 NaN 64435 35 0 9208.3 0.261 + 24252 RYFLPPYTF 9 31 602.3118896484375 NaN 0 602.3118896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.2057823575117 0.2651744870083793 1 T 1 8 5.4846 0 0 0.45605 0 0 165.07570518673043 933.4598482721311 1098.5355534588616 0 0 0 0 0 0 0 0 0 + T 0.45605 + + 1 + NaN NaN 102423.6 NaN 22516 5211 27727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27730 107.44 NaN 36808 35 0 7581.7 0.261 + 30498 VMAHLLSLCQP 11 21 606.314877941371 NaN 0 606.2991943359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VMAHLLSLCQP_ REV__ENSG00000080823|ENST00000361847|MOK;REV__ENST00000521766.5_1_14:102695648-102699035:-|nuORF;REV__ENST00000559138.5_1_14:102692624-102700125:-|nuORF;REV__nc|ENSG00000080823|Q9UQ07-4|MOK;REV__nc|ENSG00000080823|Q9UQ07-5|MOK;REV__nc|ENSG00000080823|Q9UQ07-6|MOK 1.4819007175156935 0.3379164178981577 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91669.8 NaN 22517 5211 27727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27732 107.44 NaN 202440 35 0 23476 0.411 -1 0 61 407.64360204693577 813.2726511606716 2 407.6436462402344 MULTI HCD FTMS 0 0 0 27731 28277.53515625 0.43467869451721897 -12 0.11821746826171875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 140325.3 NaN 22518 5212 27731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27734 107.45 NaN 72609 35 0 14674 0.327 -1 0 27 554.8167102058271 1107.6188674784541 2 554.8170776367188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 {I|L}P 2 -1 19.464 0 0 1.7573 0 0 0 894.4639986627561 894.4639986627561 4.859856381998782 0 0 0 0 0 0 0 0 {I|L}P 1.7573 - 5 + NaN NaN 101915.1 NaN 22519 5213 27733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27735 107.45 NaN 24169 35 0 3050.2 0.261 + 35977 YYVSYAVFVV 10 19 605.31298828125 NaN 0 605.31298828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YYVSYAVFVV_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF 1.4819007175156935 0.33891598740166873 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87713.3 NaN 22520 5213 27733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27736 107.46 NaN 62221 35 0 8408.5 0.261 -1 TWMKEFFL 8 47 559.2707502782542 NaN 0 559.3046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _TWM(Oxidation (M))KEFFL_ ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 2.8892196856762586 0.38822285293237185 1 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.84762 0 0 132.03190088200375 687.3406157550185 819.3725166370223 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.84762 + + 7 + NaN NaN 93634.9 NaN 22521 5213 27733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27738 107.46 NaN 143090 35 0 24544 0.327 -1 0 40 407.204037976164 406.196761509564 1 407.2041015625 MULTI HCD FTMS 0 0 0 27737 75541.5 0.6625810760232603 -4 0.05242919921875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 109224.5 NaN 22522 5214 27737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27739 107.47 NaN 128810 35 0 28871 0.261 -1 0 29 466.6285254306959 931.2424979281918 2 466.6285095214844 MULTI HCD FTMS 0 0 0 27737 25226.814453125 0.3009327283673561 3 -0.03173828125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97110.7 NaN 22523 5214 27737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27740 107.47 NaN 79177 35 0 12111 0.261 + 28031 TFYLHIGY 8 38 507.2567436085487 NaN 0 506.7995300292969 PEAK HCD FTMS 0 0 0 27737 20641.15234375 0.7704432341167576 -5 0.0616302490234375 3 Unmodified _TFYLHIGY_ REV__ENSG00000182326|ENST00000360817|C1S;REV__ENST00000488701.1_1_12:7168132-7170034:+|nuORF;REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110877.7 NaN 22524 5214 27737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27742 107.47 NaN 906130 35 0 72089 0.327 + 20666 PFKRRRRRAQT 11 69 491.299405777737 1470.876387933411 3 491.29937744140625 MULTI HCD FTMS 0 0 0 27741 244595.46875 0.6082665225343405 -3 0.033172607421875 1 Unmodified _PFKRRRRRAQT_ REV__ENST00000328766.9_1_X:100913503-100914797:-|nuORF;REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF 0.3666738066901352 0.4173125597497531 1 H 1 -1 8.2268 0 0 0.55931 0 0 805.4986546343861 525.2916011095047 1330.7902557438906 0 0 0 0 0 0.4247425010840047 0 0 0 H 0.55931 - 6 + NaN NaN 213091.9 NaN 22525 5215 27741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27743 107.48 NaN 60914 35 0 17409 0.261 + 20088 NYIPRFWTF 9 19 622.3172719680749 1242.6199910029497 2 622.3174438476562 MULTI HCD FTMS 0 0 0 27741 6773.85498046875 0.14861407278247019 -9 0.09815216064453125 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 1 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4070447961716 849.4070447961716 37.447274948966935 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 7 NaN NaN 91511.5 NaN 22526 5215 27741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27745 107.48 NaN 59183 35 0 13451 0.327 + 23493 RMFKRHQRLKK 11 24 509.977193617203 NaN 0 510.2301025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RMFKRHQRLKK_ ENSG00000084092|ENST00000264230|NOA1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87024.1 NaN 22527 5216 27744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27746 107.49 NaN 159170 35 0 28116 0.261 + -1 PEWLKWERMKR 11 40 525.6136266868413 NaN 0 525.6133422851562 PEAK HCD FTMS 0 0 0 27744 18794.1484375 0.74700407829931 10 -0.10147857666015625 2 Oxidation (M) _PEWLKWERM(Oxidation (M))KR_ REV__ENSG00000128609|ENST00000355749|NDUFA5;REV__nc|ENSG00000128609|Q16718-2|NDUFA5 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107895.5 NaN 22528 5216 27744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27748 107.49 NaN 395610 35 0 41322 0.327 + 23226 RFWKLILLTWL 11 89 496.9748530783172 1487.9027298351516 3 496.9749755859375 MULTI HCD FTMS 0 0 0 27747 171910.71875 0.5083013778295994 -1 0.0093536376953125 1 Unmodified _RFWKLILLTWL_ ENST00000465952.5_1_13:31205167-31205455:+|nuORF 0.09484139111097674 0.41850472438158626 1 A 1 11 7.7423 0 0 0.52035 0 0 809.4977256031196 604.3547457330686 1413.8524713361883 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.52035 - 19 + NaN NaN 148428 NaN 22529 5217 27747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27749 107.5 NaN 117600 35 0 29055 0.261 -1 KKCHQCVETI 10 37 434.88223622800285 NaN 0 434.882080078125 PEAK HCD FTMS 0 0 0 27747 65589.0078125 0.6393936714489856 431 -2.9745254516601562 2 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113973.2 NaN 22530 5217 27747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27751 107.5 NaN 458540 35 0 145230 0.327 -1 MRVRWLRF 8 33 590.3321887229256 1178.649824512651 2 590.3319091796875 MULTI HCD FTMS 0 0 0 27750 242151.46875 0.23436811819282372 -14 0.1405792236328125 1 Oxidation (M) _M(Oxidation (M))RVRWLRF_ ENST00000531894.5_1_16:70011782-70023933:-|nuORF 4.75600775471527 0.5349361699807423 1 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 6 -1 44.654 0 0 3.7885 0 0 387.17993186919745 0 387.17993186919745 0 37.663800089887545 0 0 0 1.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 3.7885 - 27 NaN NaN 149035.5 NaN 22531 5218 27750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27752 107.51 NaN 120990 35 0 16831 0.263 -1 MRRPGDHG 8 53 471.22037475159885 NaN 0 471.22039794921875 PEAK HCD FTMS 0 0 0 27750 44642.6796875 0.696404347342311 -11 0.1190185546875 2 Oxidation (M) _M(Oxidation (M))RRPGDHG_ ENST00000373624.6_1_9:126641279-126692203:-|nuORF;nc|ENSG00000119522|Q8TEH3-6|DENND1A 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102430.7 NaN 22532 5218 27750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27754 107.51 NaN 276410 35 0 104090 0.327 + 22727 QYDKRKKKRKK 11 59 502.65041652247044 1504.9294201676114 3 502.65020751953125 MULTI HCD FTMS 0 0 0 27753 52153.8203125 0.6840581210068706 -2 0.01876068115234375 1 Unmodified _QYDKRKKKRKK_ REV__AKAP7|p.I239*|1|0.21|ENSG00000118507|chr6:131219667-131219667|A/-|frameshift_variant;REV__ENSG00000118507|ENST00000431975|AKAP7 0.09484139111097674 0.41850472438158626 1 P 1 -1 2.4743 0 0 0.16441 0 0 765.4725853060864 639.3731173150999 1404.8457026211863 0 0 0 0 0 0 0 0 0 P 0.16441 - 2 + NaN NaN 119650 NaN 22533 5219 27753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27755 107.52 NaN 124350 35 0 15690 0.261 -1 0 40 566.2976747598004 1130.5807965864008 2 566.2972412109375 MULTI HCD FTMS 0 0 0 27753 37577.39453125 0.40002123230890424 38 -0.275390625 2 NaN NaN 1 V{M(Oxidation (M))|F} 2 -1 29.024 0 0 2.5672 0 0 866.4312426927893 0 866.4312426927893 0 8.05462187404089 0 0 0 0.805462187404089 0 0 0 V{M(Oxidation (M))|F} 2.5672 - 25 NaN NaN 104976.9 NaN 22534 5219 27753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27756 107.52 NaN 111680 35 0 17558 0.261 + 20974 PLIVRYFR 8 41 532.3238997475268 NaN 0 532.2719116210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PLIVRYFR_ ENSG00000124098|ENST00000371384|FAM210B 9.347437153973935 0.38822285293237185 1 R 1 7 8.9794 0 0 0.84501 0 0 696.395527911266 207.1142519586547 903.5097798699206 0 0 0 0 0 0 0 0 0.3494850021680094 + R 0.84501 + + 6 + NaN NaN 100307.3 NaN 22535 5219 27753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27757 107.52 NaN 74625 35 0 6552.4 0.261 -1 0 54 560.0045777631008 1676.9919038895023 3 559.8350219726562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 V 1 -1 6.9897 0 0 0.4168 0 0 837.5016217623521 737.4014376275999 1574.903059389952 0 0 0 0 0 0 0 0 0 V 0.4168 - 13 + NaN NaN 89865.7 NaN 22536 5219 27753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27759 107.53 NaN 952100 35 0 646170 0.411 + -1 NIGCKRLIL 9 47 543.8261851223488 1085.6378173114974 2 543.826171875 MULTI HCD FTMS 0 0 0 27758 90656.8515625 0.13154443982437278 11 -0.093597412109375 1 Carbamidomethyl (C) _NIGC(Carbamidomethyl (C))KRLIL_ REV__ENST00000399215.5_1_21:37431931-37432327:-|nuORF 11.640296217721598 0.25978676193971967 1 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 44.993 0 0 4.1444 0 0 581.3088874360405 0 581.3088874360405 0 40.38872836444014 0 0 0 1.305462187404089 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.1444 - 24 NaN NaN 374626.7 NaN 22537 5220 27758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27762 107.54 NaN 75399 35 0 8297.8 0.327 + 13537 KYPENFFLL 9 35 585.8135385759193 1169.6125242186386 2 585.8134155273438 MULTI HCD FTMS 0 0 0 27761 33780.0859375 0.2797067868041383 41 -0.28141021728515625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 1 {I|L}C{M(Oxidation (M))|F}{I|L}{I|L} 5 6 41.454 0 0 3.5442 0 0 562.255174705275 0 562.255174705275 0 34.463950151760656 0 0 0 0.5 0 0 0 {I|L}C{M(Oxidation (M))|F}{I|L}{I|L} 3.5442 - 27 NaN NaN 89681 NaN 22538 5222 27761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27763 107.55 NaN 149540 35 0 46564 0.261 + 5654 FNKFFQKDK 9 37 601.3229327647921 1200.631312596384 2 601.3226928710938 MULTI HCD FTMS 0 0 0 27761 36982.765625 0.40630997495771926 -3 0.03050994873046875 2 Unmodified _FNKFFQKDK_ REV__ENSG00000114124|ENST00000682958|GRK7 6.723162845929126 0.3000504726104499 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.58217 0 0 517.2945949223591 533.2494600885374 1050.5440550108965 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.58217 + + 4 + NaN NaN 106878.7 NaN 22539 5222 27761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27764 107.55 NaN 173400 35 0 36170 0.263 -1 0 44 481.249146340173 480.241869873573 1 481.2453308105469 MULTI HCD FTMS 0 0 0 27761 28296.6328125 0.3203446980906691 -7 0.0681610107421875 3 NaN NaN 1 T 1 -1 4.6041 0 0 0.9587 0 0 212.13324057845426 164.03847681217033 376.1717173906246 0 0 0 0 0 0 0 0 0 T 0.9587 - 3 + NaN NaN 108440.3 NaN 22540 5222 27761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27766 107.55 NaN 363460 35 0 57231 0.411 + 1838 CSYGCSSC 8 57 405.1184115193134 808.2222701054268 2 405.1189880371094 MULTI HCD FTMS 0 0 0 27765 140581.546875 0.19362815948184584 -7 0.0709686279296875 1 Unmodified _CSYGCSSC_ REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1 0 0.5419923896992614 1 [C(Carbamidomethyl (C))M]G 3 -1 10.062 0 0 1.2449 0 0 0 457.10582048067994 457.10582048067994 4.577118610328345 0 0 0 0 0.5 0 0 0 [C(Carbamidomethyl (C))M]G 1.2449 - 8 NaN NaN 200563.8 NaN 22541 5223 27765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27768 107.56 NaN 205260 35 0 33533 0.327 -1 0 33 481.249146340173 480.241869873573 1 481.24658203125 MULTI HCD FTMS 0 0 0 27767 64948.05859375 0.7352735698149574 -5 0.05049896240234375 1 NaN NaN 1 T 1 -1 9.2917 0 0 1.9348 0 0 212.13238608626676 164.03867517642814 376.17106126269493 0 0 0 0 0 0 0 0.3807196863200844 0 T 1.9348 - 6 + NaN NaN 105970.1 NaN 22542 5224 27767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27769 107.57 NaN 129380 35 0 23850 0.261 -1 LPEPAFLCLL 10 30 586.8240541973673 1171.6335554615346 2 586.8238525390625 MULTI HCD FTMS 0 0 0 27767 32682.9140625 0.46096167850617764 -1 0.0076446533203125 2 Carbamidomethyl (C) _LPEPAFLC(Carbamidomethyl (C))LL_ ENSG00000105219|ENST00000430325|CCNP 6.723162845929126 0.4397169348982109 1 {I|L}{I|L} 2 -1 25.969 0 0 2.2165 0 0 927.4529245799235 0 927.4529245799235 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2165 + + 2 NaN NaN 101560.8 NaN 22543 5224 27767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27770 107.57 NaN 66012 35 0 7681.9 0.261 -1 0 38 560.0045777631008 1676.9919038895023 3 560.3389282226562 MULTI HCD FTMS 0 0 0 27767 26388.3046875 0.29710374899087555 -5 0.05049896240234375 3 NaN NaN 1 D 1 -1 6.9897 0 0 0.4168 0 0 637.7798200045396 921.1728609674436 1558.9526809719832 0 0 0 0 0 0 0 0 0 D 0.4168 - 3 + NaN NaN 110210.9 NaN 22544 5224 27767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27771 107.57 NaN 146920 35 0 41804 0.261 + 10326 ILPPFIWTL 9 37 550.331341914281 1098.6481308953619 2 550.3314819335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _ILPPFIWTL_ ENSG00000132196|ENST00000254521|HSD17B7;ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7 16.942295170755138 0.21397866736869717 1 {I|L}WT{I|L} 4 5 29.513 0 0 2.6863 0 0 567.3415394513687 0 567.3415394513687 0 29.513356515246514 0 0 0 0.9247425010840047 0 0 0 + {I|L}WT{I|L} 2.6863 + + 13 NaN NaN 105362.7 NaN 22545 5224 27767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27774 107.58 NaN 412050 35 0 160240 0.327 + 29891 VFDLIQELF 9 44 562.3064000458504 1122.5982471585007 2 562.3048095703125 MULTI HCD FTMS 0 0 0 27773 58883.48828125 0.16228146081868153 -4 0.04285430908203125 1 Unmodified _VFDLIQELF_ ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A 38.61474834105838 0.07170385841135779 1 {I|L}QE{I|L}{M(Oxidation (M))|F} 5 4 59.068 0 0 5.2617 0 0 474.2481377442281 0 474.2481377442281 0 38.09894379144197 0 0 0 2.2614393726401687 0 0 0 + {I|L}QE{I|L}{M(Oxidation (M))|F} 5.2617 + + 47 NaN NaN 143453.7 NaN 22546 5226 27773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27775 107.59 NaN 176910 35 0 57559 0.261 -1 RLGRCLLL 8 46 500.80758032224276 NaN 0 500.80792236328125 PEAK HCD FTMS 0 0 0 27773 46828.078125 1 0 0 2 Carbamidomethyl (C) _RLGRC(Carbamidomethyl (C))LLL_ ENST00000427153.1_1_7:73149574-73149814:+|nuORF 18.13498045792455 0.38579626240450227 1 {I|L}{I|L}C(Carbamidomethyl (C)) 3 -1 21.95 0 0 2.1959 0 0 131.09576897096048 479.28428064517817 610.3800496161386 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}C(Carbamidomethyl (C)) 2.1959 - 13 + NaN NaN 105940 NaN 22547 5226 27773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27777 107.59 NaN 942490 35 0 131610 0.411 + 28592 TQARRRRRKFP 11 88 491.299405777737 1470.876387933411 3 491.29925537109375 MULTI HCD FTMS 0 0 0 27776 237809.5625 0.5913911502389102 9 -0.061370849609375 1 Unmodified _TQARRRRRKFP_ ENST00000328766.9_1_X:100913503-100914797:-|nuORF;ENST00000475854.1_1_X:100914419-100914797:-|nuORF 0.3666738066901352 0.4173125597497531 1 N 1 11 12.544 0 0 0.85285 0 0 546.3297558159552 807.4589742718722 1353.7887300878274 0 0 0 0 0 0.7059771852360797 0 0 0 N 0.85285 - 9 + NaN NaN 382673.1 NaN 22548 5227 27776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27781 107.61 NaN 2044400 35 0 497440 0.411 + 14949 LLGSILHDKKK 11 46 626.3954309433851 1250.7763089535702 2 626.8975830078125 MULTI HCD FTMS 0 0 0 27780 425553.40625 0.021889175062722234 -2 0.01296234130859375 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 -1 10.485 0 0 0.83824 0 0 672.4008602298076 444.3119110257379 1116.7127712555455 0 0 0 0 0 0.5 0 0 0 M 0.83824 - 4 + NaN NaN 694530.9 NaN 22549 5230 27780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27783 107.62 NaN 823880 35 0 247260 0.327 -1 MRVRWLRF 8 49 590.3321887229256 1178.649824512651 2 590.3323364257812 MULTI HCD FTMS 0 0 0 27782 497466.90625 0.48147708243466253 -1 0.0068359375 1 Oxidation (M) _M(Oxidation (M))RVRWLRF_ ENST00000531894.5_1_16:70011782-70023933:-|nuORF 4.75600775471527 0.5349361699807423 1 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 6 -1 44.654 0 0 3.7885 0 0 387.1789429023235 0 387.1789429023235 0 33.68440000316717 0 0 0 1.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 3.7885 - 106 NaN NaN 222938.2 NaN 22550 5231 27782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27784 107.63 NaN 12136000 35 0 3270900 0.261 + 12087 KKKDHLISGLL 11 51 626.3954309433851 1250.7763089535702 2 626.8981323242188 MULTI HCD FTMS 0 0 0 27782 2180150 0.1121402961699214 -1 0.0068359375 2 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 9.6041 0 0 0.76785 0 0 672.4001643254411 444.31227424035734 1116.7124385657985 0 0 0 0 0 0.5 0 0 0 M 0.76785 - 5 + NaN NaN 1919784.8 NaN 22551 5231 27782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27787 107.64 NaN 20209000 35 0 2658000 0.327 + 21245 PRKKSPNELVD 11 56 641.8598510135542 1281.7051490939084 2 641.85986328125 MULTI HCD FTMS 0 0 0 27786 9546050 0.25607288720051086 1 -0.0061798095703125 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3877749288398915 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3295859224 444.3118578430267 1147.6414437654266 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 22 + NaN NaN 657789.1 NaN 22552 5233 27786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27790 107.65 NaN 3966000 35 0 288060 0.327 + 14749 LHTMQGKLIML 11 69 642.8624877929688 NaN 0 642.8624877929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LHTMQGKLIML_ REV__ENSG00000091536|ENST00000647165|MYO15A 5.296884461304476 0.3270944076746277 1 M 1 -1 8.8515 0 0 0.69006 0 0 704.3331746197018 444.31192638442144 1148.6451010041233 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.69006 + + 13 + NaN NaN 614350.8 NaN 22553 5235 27789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27807 107.75 NaN 2783100 35 0 732020 0.335 + 23762 RRKHGIKFLP 10 70 626.393462990152 NaN 0 626.393310546875 PEAK HCD FTMS 0 0 0 27806 3790222.5 0.43251669313726454 -6 0.04119873046875 1 Unmodified _RRKHGIKFLP_ REV__ENSG00000125257|ENST00000645237|ABCC4;REV__nc|ENSG00000125257|O15439-2|ABCC4;REV__nc|ENSG00000125257|O15439-3|ABCC4;REV__nc|ENSG00000125257|O15439-4|ABCC4 6.2057823575117 0.3348729994311477 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3965506106834 444.3118981355131 1116.7084487461966 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 14 + NaN NaN 700080.8 NaN 22554 5251 27806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27810 107.76 NaN 9802500 35 0 1185900 0.327 + 21255 PRKKSPNELVD 11 79 641.8587070307395 NaN 0 641.8587646484375 PEAK HCD FTMS 0 0 0 27809 4816590 0.4728796581310366 1 -0.00608062744140625 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.3114850535502259 1 V 1 10 10.485 0 0 0.81802 0 0 348.2694906985002 831.3520365172592 1179.6215272157594 0 0 0 0 0 0.5 0 0 0 + V 0.81802 + + 11 + NaN NaN 936317 NaN 22555 5253 27809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27828 107.87 NaN 10928000 35 0 1276800 0.327 + 10290 IKVRHGQVSYP 11 81 642.3621546319797 NaN 0 642.3619384765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _IKVRHGQVSYP_ REV__ENSG00000120733|ENST00000314358|KDM3B;REV__ENST00000512928.1_1_5:137708527-137717285:+|nuORF;REV__KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant;REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant 5.296884461304476 0.3270944076746277 1 T 1 -1 6.1536 0 0 0.47973 0 0 55.034268824613555 1123.5834444635377 1178.6177132881512 0 0 0 0 0 0 0 0.3054621874040891 0 T 0.47973 - 9 + NaN NaN 1227958 NaN 22556 5270 27827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27830 107.87 NaN 4883600 35 0 1492600 0.327 + 14950 LLGSILHDKKK 11 51 626.394437109841 1250.7743212864818 2 626.393310546875 MULTI HCD FTMS 0 0 0 27829 5244891 0.43244806475263126 7 -0.04276275634765625 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 -1 10.485 0 0 0.83824 0 0 672.3990080625574 444.3116950952311 1116.7107031577884 0 0 0 0 0 0.5 0 0 0 M 0.83824 - 6 + NaN NaN 673567.8 NaN 22557 5271 27829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27834 107.89 NaN 9075900 35 0 1153700 0.327 + 21256 PRKKSPNELVD 11 80 641.8591208446426 NaN 0 641.8591918945312 PEAK HCD FTMS 0 0 0 27833 2483567.5 0.09599712345006642 10 -0.082489013671875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.3114850535502259 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3278047574021 444.3121002181246 1147.6399049755266 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 19 + NaN NaN 1074559.6 NaN 22558 5274 27833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27837 107.9 NaN 7282600 35 0 1844900 0.327 + 13131 KYLKKMLSKL 10 51 626.394437109841 1250.7743212864818 2 626.8959350585938 MULTI HCD FTMS 0 0 0 27836 3168630.5 0.40404599342127745 12 -0.0946502685546875 1 Unmodified _KYLKKMLSKL_ ENSG00000165837|ENST00000298738|ERICH6B;nc|ENSG00000165837|Q5W0A0-2|ERICH6B 5.731851221503515 0.44496410492002586 1 M 1 9 10.485 0 0 0.83824 0 0 672.3988208498405 444.3118740484232 1116.7106948982637 0 0 0 0 0 0.5 0 0 0 + M 0.83824 + + 6 + NaN NaN 694511.3 NaN 22559 5276 27836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27841 107.92 NaN 188900 35 0 12317 0.326 + 20415 PAALRKLLHA 10 72 545.34716796875 NaN 0 545.34716796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PAALRKLLHA_ ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 3.5964929083625545 0.337106189561315 1 K 1 9 4.9608 0 0 0.45819 0 0 556.4059678693374 395.17316614322505 951.5791340125625 0 0 0 0 0 0 0 0 0.2742275032520141 + K 0.45819 + + 26 + NaN NaN 107402.3 NaN 22560 5279 27840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27842 107.93 NaN 9235900 35 0 2358800 0.261 + 14951 LLGSILHDKKK 11 62 626.392010199177 1250.7694674651539 2 626.8933715820312 MULTI HCD FTMS 0 0 0 27840 7213038 0.8793899774697891 -3 0.019287109375 2 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 -1 9.6041 0 0 0.76785 0 0 672.3933333541514 444.3122594481743 1116.7055928023258 0 0 0 0 0 0.5 0 0 0 M 0.76785 - 31 + NaN NaN 1479062.6 NaN 22561 5279 27840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27843 107.93 NaN 223140 35 0 44710 0.261 -1 NVCLELTIW 9 48 574.292236328125 NaN 0 574.292236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _NVC(Carbamidomethyl (C))LELTIW_ ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5 26.268140514670165 0.145325121643443 1 {I|L}T{I|L} 3 -1 29.297 0 0 2.5552 0 0 204.09784512826258 612.2419573629354 816.339802491198 0 0 0 0 0 0.9604093769761877 0 0.5 0 {I|L}T{I|L} 2.5552 + + 25 + NaN NaN 120528.9 NaN 22562 5279 27840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27845 107.93 NaN 8133100 35 0 2538100 0.327 + 14952 LLGSILHDKKK 11 65 626.392010199177 1250.7694674651539 2 626.391357421875 MULTI HCD FTMS 0 0 0 27844 10434131 1 0 0 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 8.155526934196011 0.3831532958467648 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3933841924155 444.3121598597157 1116.7055440521312 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 12 + NaN NaN 1306850.8 NaN 22563 5280 27844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27846 107.94 NaN 7489800 35 0 934040 0.261 + 10311 ILKIEYIHQE 10 81 643.361186808896 1284.707820684592 2 643.3605346679688 MULTI HCD FTMS 0 0 0 27844 4553079.5 1 0 0 2 Unmodified _ILKIEYIHQE_ ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant 5.731851221503515 0.44496410492002586 1 M 1 10 8.9794 0 0 0.69894 0 0 706.3320955983081 444.3121716965682 1150.6442672948763 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 33 + NaN NaN 1218696.6 NaN 22564 5280 27844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27847 107.94 NaN 4768100 35 0 896150 0.261 + 28074 TGVILLRLDRL 11 79 634.9058625994508 1267.7971722657014 2 634.9061279296875 MULTI HCD FTMS 0 0 0 27844 3964412.5 0.8134548546187947 -2 0.01924896240234375 3 Unmodified _TGVILLRLDRL_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF 5.731851221503515 0.39378271418728467 1 M 1 11 4.6041 0 0 0.36316 0 0 689.4227687288995 444.3120558987723 1133.734824627672 0 0 0 0 0 0 0 0 0 M 0.36316 - 21 + NaN NaN 801059.5 NaN 22565 5280 27844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27848 107.95 NaN 3228700 35 0 1268800 0.261 + 14876 LKLLISKLKAH 11 52 632.4272349611745 1262.8399169891488 2 632.4267578125 MULTI HCD FTMS 0 0 0 27844 2819847 1 0 0 4 Unmodified _LKLLISKLKAH_ ENSG00000065325|ENST00000262441|GLP2R 0.3070304955306653 0.41757413505135293 1 A 1 10 4.6041 0 0 0.36458 0 0 968.7149607897333 220.06475244693596 1188.7797132366693 0 0 0 0 0 0 0 0 0 + A 0.36458 + + 23 + NaN NaN 575730.4 NaN 22566 5280 27844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27849 107.95 NaN 1165800 35 0 316090 0.261 + 33553 YIKSIILIRK 10 48 623.9140625 NaN 0 623.9140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YIKSIILIRK_ tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1 1.4819007175156935 0.33891598740166873 1 M 1 10 5.4846 0 0 0.44024 0 0 667.4382652643837 444.31159645300284 1111.7498617173865 0 0 0 0 0 0 0 0 0 M 0.44024 - 8 + NaN NaN 254942.3 NaN 22567 5280 27844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27851 107.95 NaN 7488400 35 0 891980 0.327 -1 PIKKEKSCHR 10 80 641.8557272624686 NaN 0 641.8555297851562 PEAK HCD FTMS 0 0 0 27850 7614434 1 0 0 1 Carbamidomethyl (C) _PIKKEKSC(Carbamidomethyl (C))HR_ ENSG00000158553|ENST00000444565|POM121L2 5.731851221503515 0.33527861879838866 1 M 1 -1 9.6041 0 0 0.74933 0 0 703.3211260083572 444.3120004353112 1147.6331264436683 0 0 0 0 0 0.5 0 0 0 M 0.74933 - 15 + NaN NaN 1214746.6 NaN 22568 5281 27850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27856 107.98 NaN 6770400 35 0 867030 0.327 + 21246 PRKKSPNELVD 11 94 641.8571252264768 1281.6996975197535 2 641.8572387695312 MULTI HCD FTMS 0 0 0 27855 2933199.75 0.6578918033452406 -1 0.0060272216796875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3237845337187 444.31212691671317 1147.6359114504319 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 91 + NaN NaN 1498328.8 NaN 22569 5285 27855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27861 108 NaN 1443100 35 0 338830 0.411 -1 0 177 437.33002191767997 872.64549090216 2 437.3301696777344 MULTI HCD FTMS 0 0 0 27860 1147760.875 0.30699172888801574 3 -0.01959228515625 1 NaN NaN 1 V 1 -1 8.4949 0 0 0.97346 0 0 479.34250481333106 291.21170645650534 770.5542112698364 0 0 0 0 0 0.5 0 0 0 V 0.97346 - 91 + NaN NaN 518245.8 NaN 22570 5289 27860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27870 108.05 NaN 5578000 35 0 1446500 0.327 + 12088 KKKDHLISGLL 11 63 626.392010199177 1250.7694674651539 2 626.391357421875 MULTI HCD FTMS 0 0 0 27869 4697753.5 0.45022949203915497 17 -0.117431640625 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3936506812652 444.31200577840013 1116.7056564596653 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 23 + NaN NaN 1056373.2 NaN 22571 5297 27869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27873 108.07 NaN 4231800 35 0 569110 0.327 + 28075 TGVILLRLDRL 11 76 634.9062115144928 1267.7978700957856 2 634.9059448242188 MULTI HCD FTMS 0 0 0 27872 1579579.375 0.5276721665249006 5 -0.040130615234375 1 Unmodified _TGVILLRLDRL_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF 5.731851221503515 0.39378271418728467 1 M 1 11 4.6041 0 0 0.36316 0 0 689.4196274224012 444.3119351147492 1133.7315625371502 0 0 0 0 0 0 0 0 0 M 0.36316 - 4 + NaN NaN 695088 NaN 22572 5299 27872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27874 108.07 NaN 2178000 35 0 750110 0.261 + 19207 NILAKRLLILP 11 57 632.4283606426205 NaN 0 632.42626953125 PEAK HCD FTMS 0 0 0 27872 1109566.75 0.5141245424792726 -8 0.04895782470703125 2 Unmodified _NILAKRLLILP_ ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 0.35063188157827746 0.3411255017974031 1 W 1 11 1.7827 0 0 0.14117 0 0 648.4458145366243 425.28891931705317 1073.7347338536774 0 0 0 0 0 0 0 0 0 W 0.14117 - 8 + NaN NaN 416681.3 NaN 22573 5299 27872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27877 108.08 NaN 4491100 35 0 1181100 0.327 + 10578 IPLGLDLKNLR 11 58 626.3939042316877 1250.7732555301752 2 626.39306640625 MULTI HCD FTMS 0 0 0 27876 3143338 0.39393162393162395 -5 0.0338134765625 1 Unmodified _IPLGLDLKNLR_ ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2;nc|ENSG00000064607|Q8IX01-4|SUGP2;SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant 2.735195868890462 0.4069250265843076 1 M 1 11 10.485 0 0 0.83825 0 0 672.397231651989 444.3120294147182 1116.7092610667073 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 5 + NaN NaN 763882.2 NaN 22574 5301 27876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27878 108.08 NaN 4057100 35 0 632120 0.261 + 14890 LKQQRKLLEI 10 76 634.9062115144928 1267.7978700957856 2 634.9080810546875 MULTI HCD FTMS 0 0 0 27876 870445.875 0.2907799810338197 7 -0.04921722412109375 2 Unmodified _LKQQRKLLEI_ REV__ENSG00000065809|ENST00000181796|FAM107B;REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF;REV__nc|ENSG00000065809|Q9H098|FAM107B 1.4819007175156935 0.4674597685733628 1 M 1 -1 3.9794 0 0 0.31388 0 0 689.4217646007285 444.3119865052644 1133.7337511059927 0 0 0 0 0 0 0 0 0 M 0.31388 - 11 + NaN NaN 698164.6 NaN 22575 5301 27876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27879 108.09 NaN 2457200 35 0 1223900 0.255 + 23980 RVRPRLRLVV 10 63 632.4283606426205 NaN 0 632.4280395507812 PEAK HCD FTMS 0 0 0 27876 612996.9375 0.28403588160278126 -6 0.03995513916015625 3 Unmodified _RVRPRLRLVV_ REV__ENSG00000225556|ENST00000694868|C2CD4D 0.4007161486938917 0.3398413315442166 1 T 1 -1 4.5205 0 0 0.35797 0 0 852.5369631772495 306.24067102603755 1158.777634203287 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.35797 - 8 + NaN NaN 450051.8 NaN 22576 5301 27876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27885 108.12 NaN 6988300 35 0 839530 0.327 + 21247 PRKKSPNELVD 11 90 641.859036970748 1281.7035210082959 2 641.8579711914062 MULTI HCD FTMS 0 0 0 27884 4079412.5 0.5633655915790124 -7 0.05246734619140625 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 VW 2 10 10.969 0 0 0.85582 0 0 348.2700045169906 645.2836397760374 993.5536442930279 0 0 0 0 0 0.5 0 0 0 VW 0.85582 - 77 + NaN NaN 1369370.5 NaN 22577 5306 27884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27888 108.13 NaN 8901000 35 0 1058700 0.327 + 35179 YVKKVTSTVFN 11 77 643.3613575120784 1284.7081620909566 2 643.3624877929688 MULTI HCD FTMS 0 0 0 27887 1902933.75 0.3406921734572042 -7 0.04921722412109375 1 Unmodified _YVKKVTSTVFN_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 2.9952420565917617 0.40578455234410343 1 M 1 -1 8.9794 0 0 0.69894 0 0 706.3323282127886 444.31226073259893 1150.6445889453876 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 16 + NaN NaN 1282118.9 NaN 22578 5308 27887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27891 108.14 NaN 5537100 35 0 1068200 0.327 + 12089 KKKDHLISGLL 11 64 626.3939042316877 1250.7732555301752 2 626.896484375 MULTI HCD FTMS 0 0 0 27890 2403200.5 0.5024095563161337 3 -0.02197265625 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3974450378865 444.3120151553102 1116.7094601931967 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 15 + NaN NaN 816289.3 NaN 22579 5310 27890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27892 108.15 NaN 882060 35 0 374990 0.261 + 14312 LDKNKHKQP 9 75 554.3165025187859 NaN 0 554.3152465820312 PEAK HCD FTMS 0 0 0 27890 410636.21875 0.23061395198053714 -2 0.012420654296875 2 Unmodified _LDKNKHKQP_ REV__ENSG00000148773|ENST00000368654|MKI67 4.3292370932331545 0.2742679634796037 1 {I|L}D{I|L} 3 -1 10.802 0 0 0.97613 0 0 132.16062251422187 630.2396944635374 762.4003169777593 0 0 0 0 0 0 0 0 0 {I|L}D{I|L} 0.97613 - 22 + NaN NaN 221054.8 NaN 22580 5310 27890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27894 108.15 NaN 2341800 35 0 1468000 0.371 + 28191 TKPRVDVG 8 88 436.2543426794926 870.4941324257852 2 436.2544250488281 MULTI HCD FTMS 0 0 0 27893 1645391.75 0.5830923629631724 -7 0.04564666748046875 1 Unmodified _TKPRVDVG_ ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2 2.8892196856762586 0.5377058178582064 1 C 1 8 10.713 0 0 1.2307 0 0 749.4764531428735 0 749.4764531428735 0 8.494850021680092 0 0 0 0 0 0 0 C 1.2307 - 48 + NaN NaN 691200.6 NaN 22581 5311 27893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27896 108.16 NaN 9065100 35 0 970800 0.327 + 21248 PRKKSPNELVD 11 74 641.859036970748 1281.7035210082959 2 642.3613891601562 MULTI HCD FTMS 0 0 0 27895 3021615.75 0.5685711675556346 -2 0.01541900634765625 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 V 1 10 10.485 0 0 0.81802 0 0 348.26991863842073 831.353839877683 1179.6237585161036 0 0 0 0 0 0.5 0 0 0 + V 0.81802 + + 30 + NaN NaN 1340871.4 NaN 22582 5312 27895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27899 108.17 NaN 5390400 35 0 1275800 0.327 + 12628 KVTIKGKRHW 10 59 626.8882890557663 1251.7620251783326 2 626.8946533203125 MULTI HCD FTMS 0 0 0 27898 1004652.75 0.5586890959162811 -1 0.00615692138671875 1 Unmodified _KVTIKGKRHW_ ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2 3.5964929083625545 0.45626689593999237 1 W 1 9 13.495 0 0 1.0781 0 0 1047.671050302159 0 1047.671050302159 0 8.010299956639813 0 0 0 0 0 0 0 + W 1.0781 + + 35 + NaN NaN 839186.8 NaN 22583 5314 27898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27901 108.18 NaN 3073400 35 0 744640 0.327 + 10268 IKEIIWVRNP 10 72 634.3773115460813 1266.7400701589625 2 634.37890625 MULTI HCD FTMS 0 0 0 27900 508125.34375 0.2000571651274169 7 -0.0511016845703125 1 Unmodified _IKEIIWVRNP_ ENST00000527278.5_1_7:64389231-64389459:+|nuORF 5.731851221503515 0.44496410492002586 1 M 1 10 8.4949 0 0 0.67061 0 0 688.3672372204979 444.312018046873 1132.679255267371 0 0 0 0 0 0.5 0 0 0 M 0.67061 - 22 + NaN NaN 554294.9 NaN 22584 5315 27900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27902 108.18 NaN 1082000 35 0 335580 0.261 + 23403 RLHERIER 8 73 554.8183940069499 NaN 0 554.8187866210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RLHERIER_ REV__ENSG00000158301|ENST00000483720|GPRASP2 5.230669730166228 0.38822285293237185 1 S 1 -1 5.8412 0 0 0.52737 0 0 590.3477732660498 427.2098482721313 1017.5576215381811 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.52737 - 4 + NaN NaN 244838.5 NaN 22585 5315 27900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27906 108.2 NaN 4429800 35 0 829520 0.408 + 12090 KKKDHLISGLL 11 74 626.3936506758371 1250.772748418474 2 626.3937377929688 MULTI HCD FTMS 0 0 0 27905 4143471 0.7537701276997589 -4 0.027740478515625 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 9.6041 0 0 0.76785 0 0 672.3965685282117 444.31215881703355 1116.7087273452453 0 0 0 0 0 0.5 0 0 0 M 0.76785 - 9 + NaN NaN 1415703.8 NaN 22586 5318 27905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27908 108.21 NaN 2284000 35 0 1081100 0.327 + 19208 NILAKRLLILP 11 52 632.4283606426205 NaN 0 632.4305419921875 PEAK HCD FTMS 0 0 0 27907 695941.9375 0.32246895485046395 12 -0.08596038818359375 1 Unmodified _NILAKRLLILP_ ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 0.35063188157827746 0.3411255017974031 1 W 1 11 5.4846 0 0 0.4343 0 0 648.4458731612052 425.2945066171382 1073.7403797783434 0 0 0 0 0 0 0 0 0 W 0.4343 - 18 + NaN NaN 433984.2 NaN 22587 5319 27907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27909 108.21 NaN 706940 35 0 159090 0.261 -1 PKIHPKCTK 9 75 554.8182983398438 NaN 0 554.8182983398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _PKIHPKC(Carbamidomethyl (C))TK_ ENSG00000174453|ENST00000312504|VWC2L;nc|ENSG00000174453|B2RUY7-2|VWC2L 4.3292370932331545 0.2742679634796037 1 T 1 -1 3.9794 0 0 0.3596 0 0 470.2390996076186 532.3018266804647 1002.5409262880833 0 0 0 0 0 0 0 0 0 T 0.3596 + + 7 + NaN NaN 194251.4 NaN 22588 5319 27907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27911 108.21 NaN 4304500 35 0 573420 0.402 + 26539 SVLLIAVRWLV 11 89 634.9079781324209 1267.8014033316417 2 634.907958984375 MULTI HCD FTMS 0 0 0 27910 1889630.625 0.5768926502790004 -10 0.071746826171875 1 Unmodified _SVLLIAVRWLV_ ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2 1.3295316138638542 0.4130897924953357 1 M 1 11 3.0989 0 0 0.24443 0 0 689.4264491231329 444.3120837704147 1133.7385328935475 0 0 0 0 0 0 0 0 0 M 0.24443 - 14 + NaN NaN 1326858.9 NaN 22589 5320 27910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27916 108.24 NaN 5415300 35 0 604960 0.327 + 21249 PRKKSPNELVD 11 73 641.859036970748 1281.7035210082959 2 641.858154296875 MULTI HCD FTMS 0 0 0 27915 2894428 0.3997196023944276 11 -0.07669830322265625 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3276927102046 444.3120335732713 1147.639726283476 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 17 + NaN NaN 901484.8 NaN 22590 5324 27915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27917 108.24 NaN 2900200 35 0 610830 0.261 + 24029 RWLRASSIRI 10 65 629.3822762249717 NaN 0 629.3889770507812 PEAK HCD FTMS 0 0 0 27915 5392566.5 1 0 0 2 Unmodified _RWLRASSIRI_ ENST00000419114.6_1_5:111093119-111093227:-|nuORF 3.2813086475875832 0.33737594360511275 1 M 1 10 3.9794 0 0 0.31664 0 0 664.3986544310922 458.2917386735027 1122.690393104595 0 0 0 0 0 0 0 0 0 M 0.31664 - 16 + NaN NaN 511848.8 NaN 22591 5324 27915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27918 108.25 NaN 1795000 35 0 367110 0.264 -1 0 134 437.33130971612553 872.6480664990511 2 437.3317565917969 MULTI HCD FTMS 0 0 0 27915 256560.359375 0.09945138596414041 -6 0.041778564453125 3 NaN NaN 1 V 1 -1 8.0989 0 0 0.92809 0 0 479.3448934695145 291.2118083369684 770.5567018064828 0 0 0 0 0 0.5 0 0 0 V 0.92809 - 54 + NaN NaN 362440.1 NaN 22592 5324 27915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27921 108.26 NaN 5585300 35 0 765740 0.351 + 35180 YVKKVTSTVFN 11 70 643.3613575120784 1284.7081620909566 2 643.3622436523438 MULTI HCD FTMS 0 0 0 27920 1364377.5 0.2442716336767408 11 -0.0700225830078125 1 Unmodified _YVKKVTSTVFN_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 2.9952420565917617 0.40578455234410343 1 M 1 -1 8.9794 0 0 0.69894 0 0 706.332333927206 444.3122542037213 1150.6445881309273 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 27 + NaN NaN 1418908.5 NaN 22593 5326 27920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27924 108.27 NaN 832020 35 0 108040 0.348 + 30166 VGWPKVTG 8 135 422.238071812349 NaN 0 422.2502746582031 PEAK HCD FTMS 0 0 0 27923 134988.78125 0.3682452915244713 3 -0.01959991455078125 1 Unmodified _VGWPKVTG_ REV__ENST00000527078.5_1_8:145582492-145582844:+|nuORF;REV__ENST00000532887.5_1_8:145582492-145582561:+|nuORF 8.593279151180031 0.38822285293237185 1 VE 2 -1 7.167 0 0 0.85072 0 0 340.1624915629726 271.17035852603755 611.3328500890102 0 0 0 0 0 0 0 0.6109243748081782 0 VE 0.85072 - 13 + NaN NaN 278377.1 NaN 22594 5328 27923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27926 108.28 NaN 2172000 35 0 1245400 0.411 + 14877 LKLLISKLKAH 11 54 632.429312845637 1262.844072758074 2 632.4284057617188 MULTI HCD FTMS 0 0 0 27925 1824889 1 0 0 1 Unmodified _LKLLISKLKAH_ ENSG00000065325|ENST00000262441|GLP2R 0.3070304955306653 0.41757413505135293 1 M 1 11 3.0989 0 0 0.24539 0 0 667.4650895170289 461.3089998834594 1128.7740894004883 0 0 0 0 0 0 0 0 0 M 0.24539 - 31 + NaN NaN 730786.1 NaN 22595 5329 27925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27930 108.3 NaN 938110 35 0 135270 0.411 + 19507 NRGRLTKS 8 134 466.2766091432901 NaN 0 466.27642822265625 PEAK HCD FTMS 0 0 0 27929 312559.59375 0.49565035759310505 1 -0.00677490234375 1 Unmodified _NRGRLTKS_ REV__ENSG00000150337|ENST00000369168|FCGR1A;REV__nc|ENSG00000150337|P12314-2|FCGR1A 4.75600775471527 0.38822285293237185 1 P 1 -1 5.3615 0 0 0.57617 0 0 710.4075903795506 120.05037103824452 830.4579614177951 0 0 0 0 0 0.28872548999643577 0 0 0 P 0.57617 - 10 + NaN NaN 368448.4 NaN 22596 5332 27929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27934 108.32 NaN 5297700 35 0 1139200 0.327 + 12091 KKKDHLISGLL 11 67 626.3936506758371 1250.772748418474 2 626.3935546875 MULTI HCD FTMS 0 0 0 27933 2883986.25 0.524647737113847 13 -0.1068878173828125 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3969590932236 444.31195725154356 1116.7089163447672 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 7 + NaN NaN 964451.2 NaN 22597 5335 27933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27938 108.33 NaN 3970200 35 0 569250 0.327 + 26540 SVLLIAVRWLV 11 64 634.9079781324209 1267.8014033316417 2 634.9074096679688 MULTI HCD FTMS 0 0 0 27937 1867891.875 0.5702559431176457 8 -0.0730438232421875 1 Unmodified _SVLLIAVRWLV_ ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2 1.3295316138638542 0.4130897924953357 1 T 1 11 4.6041 0 0 0.36316 0 0 755.4410040169918 408.29096936950174 1163.7319733864936 0 0 0 0 0 0 0 0 0 T 0.36316 - 20 + NaN NaN 688420.1 NaN 22598 5338 27937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27942 108.35 NaN 460000 35 0 31001 0.327 + 11952 KFLGLRAYI 9 82 540.8295288085938 NaN 0 540.8295288085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KFLGLRAYI_ ENSG00000068971|ENST00000164133|PPP2R5B;ENSG00000078304|ENST00000694906|PPP2R5C;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENST00000556218.5_1_14:102349680-102375988:+|nuORF;nc|ENSG00000068971|Q15173-2|PPP2R5B;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D 4.3292370932331545 0.2742679634796037 1 C(Carbamidomethyl (C)) 1 9 4.1858 0 0 0.3877 0 0 711.5000206525407 205.08722864322502 916.5872492957657 0 0 0 0 0 0.3807196863200844 0 0 0 C(Carbamidomethyl (C)) 0.3877 - 24 + NaN NaN 163618.6 NaN 22599 5341 27941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27943 108.36 NaN 388580 35 0 20108 0.261 + 33467 YHLLLKELL 9 88 571.3546580164204 1140.6947630996408 2 571.3573608398438 MULTI HCD FTMS 0 0 0 27941 317912.4375 1 0 0 2 Unmodified _YHLLLKELL_ ENSG00000160293|ENST00000371850|VAV2;nc|ENSG00000160293|P52735-2|VAV2;nc|ENSG00000160293|P52735-3|VAV2 4.3292370932331545 0.3181982124262546 1 S 1 9 1.9897 0 0 0.17443 0 0 735.5344065096002 315.1080416315063 1050.6424481411066 0 0 0 0 0 0 0 0 0 S 0.17443 - 8 + NaN NaN 145405.4 NaN 22600 5341 27941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27944 108.36 NaN 503430 35 0 94022 0.261 + 10188 IFTSKGYAGF 10 72 545.7825927734375 NaN 0 545.7825927734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IFTSKGYAGF_ REV__tr|U7T8G3|U7T8G3_FUSNUCore-binding(CB)domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00045PE=4SV=1 8.155526934196011 0.33320428830121973 1 C(Carbamidomethyl (C)) 1 -1 2.2185 0 0 0.20381 0 0 602.3042928205094 323.1486910455688 925.4529838660783 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.20381 - 8 + NaN NaN 168960.8 NaN 22601 5341 27941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27945 108.37 NaN 6221300 35 0 1184400 0.261 + 25686 SIIAVIYGRYL 11 74 634.3763504742901 1266.7381480153801 2 634.8765869140625 MULTI HCD FTMS 0 0 0 27941 658133.875 0.2687177919402082 -6 0.03780364990234375 4 Unmodified _SIIAVIYGRYL_ ENSG00000135776|ENST00000344517|ABCB10 2.9952420565917617 0.40578455234410343 1 M 1 11 8.4949 0 0 0.67061 0 0 688.3635246212474 444.31207821050305 1132.6756028317504 0 0 0 0 0 0.5 0 0 0 M 0.67061 - 15 + NaN NaN 1048236.2 NaN 22602 5341 27941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27947 108.37 NaN 3795600 35 0 721610 0.327 + 19674 NVVKIGPRGRR 11 58 626.3936506758371 1250.772748418474 2 626.3914794921875 MULTI HCD FTMS 0 0 0 27946 1340676.875 0.24389266372875873 19 -0.13549041748046875 1 Unmodified _NVVKIGPRGRR_ ENST00000446492.1_1_2:136756287-136756467:+|nuORF 2.9952420565917617 0.40578455234410343 1 M 1 11 10.485 0 0 0.83825 0 0 672.3970640900386 444.3119266817924 1116.708990771831 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 13 + NaN NaN 662200.7 NaN 22603 5342 27946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27948 108.37 NaN 5019700 35 0 1087700 0.261 + 14891 LKQQRKLLEI 10 62 634.9065219151045 NaN 0 634.9053344726562 PEAK HCD FTMS 0 0 0 27946 317379.46875 0.131654581302326 1 -0.01595306396484375 2 Unmodified _LKQQRKLLEI_ REV__ENSG00000065809|ENST00000181796|FAM107B;REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF;REV__nc|ENSG00000065809|Q9H098|FAM107B 1.4819007175156935 0.33891598740166873 1 M 1 -1 3.4949 0 0 0.27566 0 0 689.4250744175542 444.3120287774881 1133.7371031950424 0 0 0 0 0 0 0 0 0 M 0.27566 - 6 + NaN NaN 839812.1 NaN 22604 5342 27946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27949 108.38 NaN 2227700 35 0 448500 0.264 -1 0 154 437.33130971612553 872.6480664990511 2 437.8316345214844 MULTI HCD FTMS 0 0 0 27946 1497661.5 0.9342529924452192 -2 0.02260589599609375 3 NaN NaN 1 V 1 -1 8.4949 0 0 0.97346 0 0 479.3449267648903 291.2116571849194 770.5565839498097 0 0 0 0 0 0.5 0 0 0 V 0.97346 - 72 + NaN NaN 430794 NaN 22605 5342 27946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27950 108.38 NaN 409880 35 0 22545 0.261 + 26114 SPKKSPKKSR 10 77 571.8552856445312 NaN 0 571.8552856445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SPKKSPKKSR_ REV__ENSG00000230797|ENST00000429584|YY2 5.731851221503515 0.33527861879838866 1 Y 1 -1 6.9897 0 0 0.61276 0 0 106.07049287729508 868.5126864647767 974.5831793420718 0 0 0 0 0 0 0 0 0 Y 0.61276 - 14 + NaN NaN 144625.9 NaN 22606 5342 27946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27952 108.39 NaN 5136400 35 0 985630 0.327 + 12092 KKKDHLISGLL 11 69 626.3936506758371 1250.772748418474 2 626.3892822265625 MULTI HCD FTMS 0 0 0 27951 3784985.25 0.6885552753317699 20 -0.13210296630859375 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3971466712848 444.3118282522073 1116.708974923492 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 3 + NaN NaN 859208.1 NaN 22607 5343 27951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27953 108.39 NaN 5441500 35 0 617170 0.261 + 21250 PRKKSPNELVD 11 75 641.859036970748 1281.7035210082959 2 641.8567504882812 MULTI HCD FTMS 0 0 0 27951 2238804.5 0.3091782019034004 30 -0.200408935546875 2 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3279597271286 444.3119485425971 1147.6399082697258 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 13 + NaN NaN 909608 NaN 22608 5343 27951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27957 108.41 NaN 3926800 35 0 1047000 0.327 + 2280 DLPVIDILKIE 11 70 634.3763504742901 1266.7381480153801 2 634.377685546875 MULTI HCD FTMS 0 0 0 27956 1623972 0.6025391675763038 3 -0.02172088623046875 1 Unmodified _DLPVIDILKIE_ ENSG00000164002|ENST00000415550|EXO5 5.296884461304476 0.39569033063702824 1 M 1 11 8.4949 0 0 0.67061 0 0 688.3692954637967 444.3117519019758 1132.6810473657724 0 0 0 0 0 0.5 0 0 0 M 0.67061 - 8 + NaN NaN 679316 NaN 22609 5346 27956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27958 108.41 NaN 1982700 35 0 412740 0.264 -1 0 143 437.33130971612553 872.6480664990511 2 437.33172607421875 MULTI HCD FTMS 0 0 0 27956 964721.0625 0.37395818655752977 16 -0.1037750244140625 2 NaN NaN 1 V 1 -1 8.9794 0 0 1.029 0 0 393.3017548048785 377.24826990299067 770.5500247078692 0 0 0 0 0 0.5 0 0 0 V 1.029 - 89 + NaN NaN 392144.7 NaN 22610 5346 27956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27960 108.42 NaN 4560500 35 0 515060 0.326 + 21251 PRKKSPNELVD 11 76 641.859036970748 1281.7035210082959 2 641.8590698242188 MULTI HCD FTMS 0 0 0 27959 1507907.25 0.20824152005773672 34 -0.22527313232421875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3280037035403 444.3118287799437 1147.639832483484 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 27 + NaN NaN 910141.9 NaN 22611 5347 27959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27962 108.42 NaN 4567300 35 0 593990 0.327 + 35181 YVKKVTSTVFN 11 75 643.362593829956 NaN 0 643.3619995117188 PEAK HCD FTMS 0 0 0 27961 779501.6875 0.3419078868372876 3 -0.01943206787109375 1 Unmodified _YVKKVTSTVFN_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 2.9952420565917617 0.33362350433860827 1 M 1 -1 8.9794 0 0 0.69894 0 0 706.3351141818204 444.3120011881461 1150.6471153699665 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 20 + NaN NaN 1031477.1 NaN 22612 5348 27961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27965 108.44 NaN 2999900 35 0 596980 0.411 + 12093 KKKDHLISGLL 11 76 626.3941562537668 1250.7737595743336 2 626.3939208984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3979388550567 444.31200838173623 1116.709947236793 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 10 + NaN NaN 978918.1 NaN 22613 5350 27964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27968 108.45 NaN 2140500 35 0 355620 0.327 + 28205 TKTRKKGLI 9 84 522.8484857965408 NaN 0 522.849365234375 PEAK HCD FTMS 0 0 0 27967 362308.1875 0.36262931842579843 -1 0.00667572021484375 1 Unmodified _TKTRKKGLI_ REV__ENSG00000143379|ENST00000692827|SETDB1;REV__nc|ENSG00000143379|Q15047-2|SETDB1;REV__nc|ENSG00000143379|Q15047-3|SETDB1;REV__nc|ENSG00000143379|Q15047|SETDB1 1.844237919475145 0.28630992268396543 1 N 1 -1 1.5938 0 0 0.15271 0 0 425.32765720149047 501.2830596116532 926.6107168131437 0 0 0 0 0 0 0 0 0 N 0.15271 - 6 + NaN NaN 527761.4 NaN 22614 5352 27967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27971 108.46 NaN 2112500 35 0 313990 0.327 + 28206 TKTRKKGLI 9 101 522.8484857965408 NaN 0 522.8482055664062 PEAK HCD FTMS 0 0 0 27970 551318.75 0.5518074099494734 1 -0.00618743896484375 1 Unmodified _TKTRKKGLI_ REV__ENSG00000143379|ENST00000692827|SETDB1;REV__nc|ENSG00000143379|Q15047-2|SETDB1;REV__nc|ENSG00000143379|Q15047-3|SETDB1;REV__nc|ENSG00000143379|Q15047|SETDB1 1.844237919475145 0.28630992268396543 1 M 1 -1 6.2371 0 0 0.59761 0 0 465.3113381928877 444.31191296362886 909.6232511565165 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.59761 - 3 + NaN NaN 400084.8 NaN 22615 5354 27970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27978 108.5 NaN 4617100 35 0 1024100 0.327 + 32847 WVVLRVLALSI 11 73 634.9083618680834 1267.8021708029667 2 634.9081420898438 MULTI HCD FTMS 0 0 0 27977 769565.3125 0.4078434774463348 -8 0.0497283935546875 1 Unmodified _WVVLRVLALSI_ REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF 1.3295316138638542 0.4130897924953357 1 M 1 -1 5.4846 0 0 0.4326 0 0 895.7323586055251 238.00643335513908 1133.7387919606642 0 0 0 0 0 0 0 0 0 M 0.4326 - 18 + NaN NaN 802812 NaN 22616 5360 27977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27984 108.53 NaN 5483000 35 0 1494900 0.327 + 10280 IKLIEGSKRHS 11 63 634.3774789199235 1266.740404906647 2 634.37744140625 MULTI HCD FTMS 0 0 0 27983 1421066.125 0.41605771163389327 -2 0.0123291015625 1 Unmodified _IKLIEGSKRHS_ ENSG00000100650|ENST00000557154|SRSF5;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;ENST00000554929.1_1_14:70237619-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5 5.296884461304476 0.39569033063702824 1 M 1 11 7.4743 0 0 0.59004 0 0 688.3651740490283 444.3118844909886 1132.6770585400168 0 0 0 0 0 0.5 0 0 0 M 0.59004 - 17 + NaN NaN 910128.1 NaN 22617 5365 27983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27985 108.53 NaN 2950200 35 0 607180 0.237 -1 0 150 437.3318239219198 872.6490949106396 2 437.833251953125 MULTI HCD FTMS 0 0 0 27983 287775 0.17301901420496477 -3 0.0185089111328125 2 NaN NaN 1 V 1 -1 7.7642 0 0 0.88973 0 0 479.3459539587152 291.21230728829596 770.5582612470112 0 0 0 0 0 0.5 0 0 0 V 0.88973 - 67 + NaN NaN 453451.4 NaN 22618 5365 27983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27987 108.54 NaN 6841400 35 0 834430 0.327 + 21252 PRKKSPNELVD 11 88 641.8593266264772 1281.7041003197544 2 641.858642578125 MULTI HCD FTMS 0 0 0 27986 2802419.5 1 0 0 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3282281238303 444.31202657850025 1147.6402547023306 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 66 + NaN NaN 1318849.5 NaN 22619 5366 27986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27991 108.56 NaN 5401300 35 0 1143900 0.327 + 14953 LLGSILHDKKK 11 62 626.3941562537668 1250.7737595743336 2 626.3952026367188 MULTI HCD FTMS 0 0 0 27990 1646686.75 0.5226713331971654 2 -0.0148773193359375 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3980807160691 444.3118302248509 1116.70991094092 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 20 + NaN NaN 542272 NaN 22620 5369 27990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27993 108.56 NaN 2143400 35 0 447100 0.327 -1 0 147 437.3318239219198 872.6490949106396 2 437.3319396972656 MULTI HCD FTMS 0 0 0 27992 1445811 0.6694832474182051 4 -0.0290374755859375 1 NaN NaN 1 V 1 -1 7.4743 0 0 0.8565 0 0 479.34614455237715 291.211625832234 770.5577703846111 0 0 0 0 0 0.5 0 0 0 V 0.8565 - 76 + NaN NaN 404609.1 NaN 22621 5370 27992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27994 108.57 NaN 2776100 35 0 554260 0.261 + 21277 PRQVRRLKAGA 11 70 626.3941562537668 1250.7737595743336 2 626.3934936523438 MULTI HCD FTMS 0 0 0 27992 1645993.125 0.522451171163622 3 -0.02263641357421875 2 Unmodified _PRQVRRLKAGA_ REV__ENSG00000196405|ENST00000392920|EVL;REV__nc|ENSG00000196405|Q9UI08-3|EVL;REV__nc|ENSG00000196405|Q9UI08-4|EVL;REV__nc|ENSG00000196405|Q9UI08-5|EVL;REV__nc|ENSG00000196405|Q9UI08|EVL 2.9952420565917617 0.40578455234410343 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3982969006946 444.3118201461103 1116.710117046805 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 16 + NaN NaN 501139.2 NaN 22622 5370 27992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27996 108.57 NaN 677950 35 0 142260 0.411 -1 VPLPETETR 9 104 542.2877281025534 NaN 0 542.2877197265625 PEAK HCD FTMS 0 0 0 27995 664967 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VPLPETETR_ ENST00000423241.6_1_2:202025635-202028587:+|nuORF 3.5964929083625545 0.27781873954207675 1 Y 1 -1 4.6041 0 0 0.4253 0 0 468.16412260710507 448.32126794986567 916.4853905569707 0 0 0 0 0 0 0 0 0 Y 0.4253 - 14 + NaN NaN 291456 NaN 22623 5371 27995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 27999 108.59 NaN 1677200 35 0 637350 0.387 -1 VRALLEKL 8 89 492.3161399991173 NaN 0 492.29913330078125 PEAK HCD FTMS 0 0 0 27998 93763.6640625 0.3707406256448402 1 -0.00640106201171875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VRALLEKL_ ENST00000371222.3_1_1:59248771-59248882:-|nuORF 2.302733041254933 0.38822285293237185 1 V 1 -1 5.4846 0 0 0.55816 0 0 348.28520583249 532.2267917310315 880.5119975635216 0 0 0 0 0 0 0 0 0 V 0.55816 + + 11 + NaN NaN 555652.1 NaN 22624 5373 27998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28005 108.62 NaN 2986400 35 0 317240 0.363 + 21253 PRKKSPNELVD 11 88 641.8593266264772 1281.7041003197544 2 641.8605346679688 MULTI HCD FTMS 0 0 0 28004 999582.25 0.35668544627240856 12 -0.07891082763671875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3877749288398915 1 M 1 11 9.6041 0 0 0.74932 0 0 703.3284702574367 444.3119414399252 1147.640411697362 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 37 + NaN NaN 835800.6 NaN 22625 5378 28004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28010 108.65 NaN 3832900 35 0 999900 0.411 + -1 PITLLRSLCPL 11 87 634.3776732970455 1266.7407936608909 2 634.3775634765625 MULTI HCD FTMS 0 0 0 28009 2369120.5 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PITLLRSLCPL_ REV__ENST00000535496.5_1_12:118474185-118474224:-|nuORF 5.731851221503515 0.39378271418728467 1 {I|L} 1 -1 7.2185 0 0 0.56985 0 0 819.4058016368532 331.22739587955317 1150.6331975164064 0 0 0 0 0 0.5 0 0 0 {I|L} 0.56985 + + 88 + NaN NaN 1228543.9 NaN 22626 5382 28009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28012 108.66 NaN 2262900 35 0 527890 0.326 -1 0 152 437.33184729101527 872.6491416488306 2 437.33184814453125 MULTI HCD FTMS 0 0 0 28011 1340845 0.6669739943340451 -3 0.0191802978515625 1 NaN NaN 1 V 1 -1 8.4949 0 0 0.97346 0 0 479.3461012511641 291.21185463076284 770.557955881927 0 0 0 0 0 0.5 0 0 0 V 0.97346 - 75 + NaN NaN 434626.3 NaN 22627 5383 28011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28013 108.66 NaN 5404600 35 0 696470 0.261 + 10312 ILKIEYIHQE 10 74 643.3621104511736 1284.7096679691472 2 643.3623657226562 MULTI HCD FTMS 0 0 0 28011 894820.6875 0.6490829231776111 -3 0.0191802978515625 2 Unmodified _ILKIEYIHQE_ ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant 5.731851221503515 0.44496410492002586 1 M 1 10 8.9794 0 0 0.69894 0 0 706.3343204367334 444.3119724351675 1150.6462928719009 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 13 + NaN NaN 919716.4 NaN 22628 5383 28011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28016 108.67 NaN 3855300 35 0 423080 0.328 + 21254 PRKKSPNELVD 11 80 641.8593266264772 1281.7041003197544 2 641.858642578125 MULTI HCD FTMS 0 0 0 28015 760617.125 0.27141444205623033 19 -0.121063232421875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3877749288398915 1 V 1 10 10.485 0 0 0.81802 0 0 348.27073670688395 831.3560346793489 1179.6267713862328 0 0 0 0 0 0.5 0 0 0 + V 0.81802 + + 38 + NaN NaN 919655.9 NaN 22629 5385 28015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28019 108.68 NaN 5393200 35 0 1059800 0.327 + 14954 LLGSILHDKKK 11 55 626.3937756021073 1250.7729982710146 2 626.8975219726562 MULTI HCD FTMS 0 0 0 28018 1066037.75 0.8278621266197853 5 -0.0310821533203125 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 8.155526934196011 0.3831532958467648 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3969701947289 444.3120696916652 1116.709039886394 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 27 + NaN NaN 643905.3 NaN 22630 5387 28018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28021 108.69 NaN 2711900 35 0 535840 0.362 + 12094 KKKDHLISGLL 11 73 626.3937756021073 1250.7729982710146 2 626.3946533203125 MULTI HCD FTMS 0 0 0 28020 1134928.125 0.7007966200321816 5 -0.0313720703125 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3971705769186 444.31198242864156 1116.7091530055602 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 10 + NaN NaN 765206.9 NaN 22631 5388 28020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28025 108.71 NaN 2192000 35 0 438190 0.327 + 14955 LLGSILHDKKK 11 66 626.3937756021073 1250.7729982710146 2 626.3929443359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 8.155526934196011 0.3831532958467648 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3974951010637 444.3118167224455 1116.709311823509 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 9 + NaN NaN 562984.8 NaN 22632 5391 28024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28036 108.77 NaN 2714700 35 0 733080 0.327 + 2281 DLPVIDILKIE 11 61 634.3775793823415 1266.740605831483 2 634.37841796875 MULTI HCD FTMS 0 0 0 28035 722732.6875 0.6992652580322795 5 -0.03391265869140625 1 Unmodified _DLPVIDILKIE_ ENSG00000164002|ENST00000415550|EXO5 5.296884461304476 0.39569033063702824 1 M 1 11 7.2185 0 0 0.56985 0 0 688.3693422590205 444.3117807526976 1132.6811230117182 0 0 0 0 0 0.5 0 0 0 M 0.56985 - 6 + NaN NaN 504098.8 NaN 22633 5401 28035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28037 108.77 NaN 757350 35 0 372530 0.261 + 16597 LVLLRALLKQP 11 45 632.4302618650931 1262.8459707969862 2 632.4299926757812 MULTI HCD FTMS 0 0 0 28035 399211.0625 0.6712158904109014 -2 0.01239776611328125 2 Unmodified _LVLLRALLKQP_ REV__ENSG00000185038|ENST00000389758|MROH2A 0.3070304955306653 0.41757413505135293 1 S 1 -1 4.6041 0 0 0.36458 0 0 729.4934450174925 443.3053946273023 1172.7988396447947 0 0 0 0 0 0 0 0 0 S 0.36458 - 18 + NaN NaN 194272.8 NaN 22634 5401 28035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28047 108.83 NaN 1876100 35 0 335440 0.411 + 12095 KKKDHLISGLL 11 64 626.3938153176668 1250.7730777021336 2 626.3928833007812 MULTI HCD FTMS 0 0 0 28046 545234.0625 0.4266149490951919 8 -0.0515899658203125 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3973727843567 444.3118780125128 1116.7092507968696 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 11 + NaN NaN 659773.8 NaN 22635 5410 28046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28049 108.84 NaN 1759600 35 0 383170 0.374 + 32848 WVVLRVLALSI 11 64 634.9086010549779 1267.8026491767557 2 634.908935546875 MULTI HCD FTMS 0 0 0 28048 219938.828125 0.29690010405361955 13 -0.0844268798828125 1 Unmodified _WVVLRVLALSI_ REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF 1.3295316138638542 0.4130897924953357 1 W 1 -1 3.4949 0 0 0.27566 0 0 448.39742279193246 630.3129335863808 1078.7103563783132 0 0 0 0 0 0 0 0 0 W 0.27566 + + 5 + NaN NaN 547091.6 NaN 22636 5411 28048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28051 108.84 NaN 2034800 35 0 366040 0.328 + 14956 LLGSILHDKKK 11 66 626.3938153176668 1250.7730777021336 2 626.8967895507812 MULTI HCD FTMS 0 0 0 28050 318347.75 0.3696183418375566 7 -0.04474639892578125 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3973793446396 444.31186294942887 1116.7092422940684 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 7 + NaN NaN 531088.4 NaN 22637 5412 28050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28054 108.86 NaN 1781700 35 0 179200 0.327 + 28111 TIHIVKYG 8 130 465.77259287688497 NaN 0 465.772216796875 PEAK HCD FTMS 0 0 0 28053 517203.03125 1 0 0 1 Unmodified _TIHIVKYG_ REV__ENSG00000151322|ENST00000356141|NPAS3;REV__nc|ENSG00000151322|Q8IXF0-2|NPAS3;REV__nc|ENSG00000151322|Q8IXF0-3|NPAS3;REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 2.577480529830294 0.38822285293237185 1 M 1 -1 6.9061 0 0 0.74297 0 0 351.1568668067012 444.3112581410274 795.4681249477286 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.74297 - 2 + NaN NaN 460409.2 NaN 22638 5414 28053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28059 108.88 NaN 1759800 35 0 329200 0.411 + 12096 KKKDHLISGLL 11 64 626.3938153176668 1250.7730777021336 2 626.390869140625 MULTI HCD FTMS 0 0 0 28058 494053.1875 0.3865687966544273 16 -0.102935791015625 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 1 M 1 11 10.485 0 0 0.83825 0 0 672.3972457905965 444.31191142422716 1116.7091572148236 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 7 + NaN NaN 620209.9 NaN 22639 5418 28058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28062 108.89 NaN 1033200 35 0 265750 0.411 + 2282 DLPVIDILKIE 11 68 634.3775793823415 1266.740605831483 2 634.3779296875 MULTI HCD FTMS 0 0 0 28061 339565.75 0.3285399095674284 24 -0.15148162841796875 1 Unmodified _DLPVIDILKIE_ ENSG00000164002|ENST00000415550|EXO5 2.735195868890462 0.4069250265843076 1 W 1 11 6.7827 0 0 0.53545 0 0 447.3351457785738 630.3042696588499 1077.6394154374236 0 0 0 0 0 0.5 0 0 0 W 0.53545 - 5 + NaN NaN 396987.2 NaN 22640 5420 28061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28065 108.91 NaN 1347700 35 0 234410 0.33 -1 0 205 437.3320672382685 NaN 0 437.3323669433594 PEAK HCD FTMS 0 0 0 28064 706448.0625 0.9446469247910826 -4 0.02713775634765625 1 NaN NaN 1 V 1 -1 6.9897 0 0 0.80097 0 0 479.3464686573215 291.2111868496275 770.557655506949 0 0 0 0 0 0.5 0 0 0 V 0.80097 - 12 + NaN NaN 382451 NaN 22641 5422 28064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28076 108.97 NaN 1408700 35 0 253500 0.411 + 23404 RLHIIVTLTVS 11 63 626.3938153176668 1250.7730777021336 2 626.3932495117188 MULTI HCD FTMS 0 0 0 28075 200661.625 0.15700642131971254 30 -0.1876983642578125 1 Unmodified _RLHIIVTLTVS_ REV__ENST00000599504.5_1_19:40502974-40503061:+|nuORF 5.731851221503515 0.39378271418728467 1 M 1 -1 10.485 0 0 0.83825 0 0 672.3970875574498 444.31194561084743 1116.7090331682973 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 8 + NaN NaN 508465.8 NaN 22642 5432 28075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28109 109.17 NaN 574990 35 0 100980 0.411 + 5549 FLGTTPRKIHV 11 59 634.878743092704 NaN 0 634.87890625 PEAK HCD FTMS 0 0 0 28108 93759 0.6822078401349368 1 -0.00691986083984375 1 Unmodified _FLGTTPRKIHV_ REV__ST8SIA2|p.L298F|1|0.17|ENSG00000140557|chr15:92464151-92464151|G/C|missense_variant 2.9952420565917617 0.33362350433860827 1 T 1 -1 3.9794 0 0 0.3139 0 0 755.3839377461517 408.2902360184284 1163.67417376458 0 0 0 0 0 0 0 0 0 T 0.3139 + + 1 + NaN NaN 255194.7 NaN 22643 5464 28108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28114 109.2 NaN 826010 35 0 140740 0.391 + 30810 VPVLEVAGKR 10 102 534.3303753077513 1066.6461976823025 2 534.8328247070312 MULTI HCD FTMS 0 0 0 28113 190706.828125 0.8529355858501957 1 -0.006561279296875 1 Unmodified _VPVLEVAGKR_ REV__ENST00000476540.1_1_X:153669338-153670248:+|nuORF;REV__ENST00000491154.1_1_X:153669338-153669692:+|nuORF 2.9952420565917617 0.4594494122822477 1 C 1 -1 3.9794 0 0 0.37308 0 0 447.34588604431536 513.2835177057249 960.6294037500402 0 0 0 0 0 0 0 0 0 C 0.37308 - 59 + NaN NaN 316423.4 NaN 22644 5468 28113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28116 109.2 NaN 2186000 35 0 495850 0.411 + 23372 RKRRGLFI 8 107 523.3406563513437 1044.6667597694873 2 523.340576171875 MULTI HCD FTMS 0 0 0 28115 748280.75 0.9505561223477105 -5 0.03269195556640625 1 Unmodified _RKRRGLFI_ ENST00000327111.7_1_5:92919409-92919580:+|nuORF 2.302733041254933 0.5385759549224092 1 K 1 7 0.48455 0 0 0.046383 0 0 628.3892156794467 285.1527193658813 913.541935045328 0 0 0 0 0 0 0 0 0 + K 0.046383 + + 89 + NaN NaN 737023 NaN 22645 5469 28115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28127 109.27 NaN 664430 35 0 113930 0.411 + 5550 FLGTTPRKIHV 11 65 634.8782348632812 NaN 0 634.8782348632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FLGTTPRKIHV_ REV__ST8SIA2|p.L298F|1|0.17|ENSG00000140557|chr15:92464151-92464151|G/C|missense_variant 2.9952420565917617 0.33362350433860827 1 T 1 -1 4.6041 0 0 0.36346 0 0 754.3809905255874 408.29025368295316 1162.6712442085407 0 0 0 0 0 0 0 0 0 T 0.36346 + + 1 + NaN NaN 289007.5 NaN 22646 5479 28126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28129 109.27 NaN 736370 35 0 135570 0.411 + 21945 QEFHLKRRR 9 65 635.3690439096408 NaN 0 634.9085083007812 PEAK HCD FTMS 0 0 0 28128 61408.46875 0.5740284864124114 -1 0.00702667236328125 1 Unmodified _QEFHLKRRR_ REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;REV__ENSG00000105877|ENST00000409508|DNAH11 2.0597508629832335 0.2852655770354268 1 T 1 -1 4.6041 0 0 0.36289 0 0 756.3642952394003 408.2910708595873 1164.6553660989875 0 0 0 0 0 0 0 0 0 T 0.36289 - 2 + NaN NaN 305561.6 NaN 22647 5480 28128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28143 109.36 NaN 782510 35 0 110110 0.403 + 14998 LLLKEPRD 8 87 492.299269838611 982.583986744022 2 492.2992248535156 MULTI HCD FTMS 0 0 0 28142 337695 1 0 0 1 Unmodified _LLLKEPRD_ REV__ENSG00000186862|ENST00000619208|PDZD7;REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF 7.910154910731844 0.5302565402355366 1 K 1 -1 10.713 0 0 1.0903 0 0 836.4749454615986 0 836.4749454615986 0 -4.463950151760656 -4.463950151760656 0 0 0 0 0 0 K 1.0903 + + 9 + NaN NaN 305947.9 NaN 22648 5493 28142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28149 109.39 NaN 259240 35 0 48489 0.411 + 34836 YRLKKRRK 8 77 574.3801705292204 NaN 0 574.3807373046875 PEAK HCD FTMS 0 0 0 28148 238168.078125 0.9214258965124837 -1 0.006256103515625 1 Unmodified _YRLKKRRK_ ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1;nc|ENSG00000197381|P78563-6|ADARB1;nc|ENSG00000197381|P78563|ADARB1 2.302733041254933 0.38822285293237185 1 A 1 8 2.4743 0 0 0.21576 0 0 204.18352853848836 868.5092867486936 1072.692815287182 0 0 0 0 0 0 0 0 0 A 0.21576 - 13 + NaN NaN 163472.2 NaN 22649 5498 28148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28158 109.44 NaN 558910 35 0 104280 0.411 + 25784 SLIPPSKRK 9 96 513.3270305340868 1024.6395081349735 2 513.3275146484375 MULTI HCD FTMS 0 0 0 28157 191912.9375 0.5337269617193526 1 -0.00688934326171875 1 Unmodified _SLIPPSKRK_ ENSG00000127527|ENST00000455140|EPS15L1;EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1 5.731851221503515 0.3075653528928475 1 A 1 9 0.71334 0 0 0.069618 0 0 317.2247264961048 633.3427128123087 950.5674393084134 0 0 0 0 0 0 0 0 0 A 0.069618 - 40 + NaN NaN 250177.8 NaN 22650 5506 28157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28160 109.45 NaN 690240 35 0 216720 0.327 + 11696 KAKKEKRK 8 75 508.3404153227597 1014.6662777123195 2 508.3401184082031 MULTI HCD FTMS 0 0 0 28159 451918.25 0.7667977592135508 1 -0.0091094970703125 1 Unmodified _KAKKEKRK_ ENST00000361589.8_1_3:173302592-173322094:+|nuORF 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 8 5.4846 0 0 0.54053 0 0 525.3118374520832 339.2906588190063 864.6024962710894 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54053 - 10 + NaN NaN 188088.1 NaN 22651 5507 28159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28161 109.45 NaN 620480 35 0 72772 0.255 + 11704 KALRVIEHV 9 89 532.831225592727 1063.647898252254 2 532.8314819335938 MULTI HCD FTMS 0 0 0 28159 138681.296875 0.5992349353120043 1 -0.0091094970703125 2 Unmodified _KALRVIEHV_ ENSG00000084110|ENST00000261208|HAL;nc|ENSG00000084110|P42357-2|HAL;nc|ENSG00000084110|P42357-3|HAL 2.0597508629832335 0.3354026079994024 1 WQ 2 9 4.9485 0 0 0.46524 0 0 363.26198624229147 383.2052096002563 746.4671958425478 0 0 0 0 0 0 0 0 0 WQ 0.46524 - 61 + NaN NaN 177519.4 NaN 22652 5507 28159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28166 109.48 NaN 1352600 35 0 413890 0.327 + 11693 KAIIRSKR 8 78 486.3275083376753 970.6404637421506 2 486.3271484375 MULTI HCD FTMS 0 0 0 28165 1094295.125 1 0 0 1 Unmodified _KAIIRSKR_ REV__ENSG00000187742|ENST00000375807|SECISBP2;REV__nc|ENSG00000187742|Q96T21-2|SECISBP2;REV__nc|ENSG00000187742|Q96T21-3|SECISBP2 4.75600775471527 0.5349361699807423 1 A 1 -1 2.4743 0 0 0.25491 0 0 204.1834274091338 692.4022310846311 896.5856584937649 0 0 0 0 0 0 0 0 0 A 0.25491 + + 21 + NaN NaN 294067.4 NaN 22653 5511 28165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28167 109.48 NaN 1268400 35 0 291950 0.261 + 11701 KALNPKRK 8 108 477.8141815767201 953.6138102202402 2 477.8138122558594 MULTI HCD FTMS 0 0 0 28165 629186.5625 1 0 0 2 Unmodified _KALNPKRK_ REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF 9.347437153973935 0.5250182646323369 1 S 1 -1 5.0663 0 0 0.53127 0 0 390.2614675462152 473.29442645180546 863.5558939980207 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.53127 - 36 + NaN NaN 278057.2 NaN 22654 5511 28165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28168 109.49 NaN 950290 35 0 202470 0.261 + 422 AKRYLRVA 8 85 488.80442457902535 975.5942962248507 2 488.8048400878906 MULTI HCD FTMS 0 0 0 28165 457357.78125 1 0 0 3 Unmodified _AKRYLRVA_ REV__ENSG00000147162|ENST00000373719|OGT;REV__nc|ENSG00000147162|O15294-2|OGT;REV__nc|ENSG00000147162|O15294-3|OGT 2.577480529830294 0.5381683276125971 1 R 1 -1 3.9794 0 0 0.40789 0 0 387.2442216604605 429.21982752017817 816.4640491806387 0 0 0 0 0 0 0 0 0 R 0.40789 + + 122 + NaN NaN 228774.8 NaN 22655 5511 28165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28169 109.49 NaN 224410 35 0 19475 0.261 + 20922 PKVILNLLKKQ 11 62 647.4348553306312 NaN 0 647.8779296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PKVILNLLKKQ_ ENSG00000176230|ENST00000641386|OR4K17;OR4K17|p.C210Vfs*12|1|0.1|ENSG00000176230|chr14:20118029-20118029|T/-|frameshift_variant 1.1933415558491238 0.338734977139133 1 {M(Oxidation (M))|F} 1 11 3.9794 0 0 0.3078 0 0 702.4853280870947 440.2818697565063 1142.767197843601 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.3078 - 15 + NaN NaN 126289.3 NaN 22656 5511 28165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28171 109.49 NaN 1121200 35 0 374380 0.327 + 10227 IHLSLARK 8 79 469.30078370545755 936.5870144777151 2 469.3008117675781 MULTI HCD FTMS 0 0 0 28170 746730.5625 1 0 0 1 Unmodified _IHLSLARK_ REV__ENST00000212355.8_1_1:92177969-92181824:-|nuORF 2.302733041254933 0.5385759549224092 1 Q 1 -1 1.9897 0 0 0.21244 0 0 588.3959266865027 217.10798059635002 805.5039072828527 0 0 0 0 0 0 0 0 0 Q 0.21244 - 12 + NaN NaN 226846.2 NaN 22657 5512 28170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28172 109.5 NaN 1289800 35 0 247230 0.23 + 9933 IDKKKVTT 8 83 466.79172472831755 NaN 0 466.7920227050781 PEAK HCD FTMS 0 0 0 28170 505845.96875 1 0 0 2 Unmodified _IDKKKVTT_ REV__ENST00000439124.1_1_6:64325734-64326112:-|nuORF 2.0597508629832335 0.38822285293237185 1 P 1 -1 5.4846 0 0 0.58874 0 0 387.2441040019891 444.2511913634983 831.4952953654874 0 0 0 0 0 0 0 0 0 P 0.58874 - 3 + NaN NaN 246621.3 NaN 22658 5512 28170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28173 109.5 NaN 439400 35 0 50055 0.261 + 18737 MYVILLIR 8 76 510.8180332572812 1019.6215135813624 2 510.8177185058594 MULTI HCD FTMS 0 0 0 28170 53375.734375 0.2100330600768676 1 -0.01215362548828125 3 Unmodified _MYVILLIR_ REV__ENST00000370214.8_1_1:94982825-94982891:+|nuORF 0.7936320650641473 0.540814922690045 1 Q 1 -1 3.9794 0 0 0.39028 0 0 492.25792483936533 396.28165464388655 888.5395794832518 0 0 0 0 0 0 0 0 0 Q 0.39028 - 16 + NaN NaN 172321.9 NaN 22659 5512 28170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28175 109.51 NaN 962600 35 0 305320 0.327 + 31198 VVLGLVSLK 9 81 464.3143269428643 926.6141009525286 2 464.31402587890625 MULTI HCD FTMS 0 0 0 28174 682709.9375 0.6127441317780102 1 -0.01270294189453125 1 Unmodified _VVLGLVSLK_ ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A 1.844237919475145 0.33703635659052655 1 A 1 9 2.4743 0 0 0.26702 0 0 204.1842700574161 648.3842867486936 852.5685568061097 0 0 0 0 0 0 0 0 0 A 0.26702 - 13 + NaN NaN 229812.2 NaN 22660 5513 28174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28176 109.51 NaN 263680 35 0 25599 0.261 + 413 AKLLPLPLA 9 51 468.3166490942712 NaN 0 468.31646728515625 PEAK HCD FTMS 0 0 0 28174 205052.71875 0.7392624665797881 2 -0.04199981689453125 2 Unmodified _AKLLPLPLA_ SIM1|p.S31L|1|0.16|ENSG00000112246|chr6:100463377-100463377|G/A|missense_variant 0.6014990680409731 0.29233206172879045 1 Y 1 9 0.71334 0 0 0.076324 0 0 511.3868249445987 257.13947473697505 768.5262996815737 0 0 0 0 0 0 0 0 0 Y 0.076324 - 6 + NaN NaN 123966.9 NaN 22661 5513 28174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28177 109.51 NaN 2751000 35 0 1751400 0.261 + 30966 VRRQRARNR 9 59 606.3700854058899 1210.7256178785797 2 606.3704223632812 MULTI HCD FTMS 0 0 0 28174 785834.1875 0.7160093984673391 -1 0.01215362548828125 3 Unmodified _VRRQRARNR_ REV__DRGX|p.R214Afs*170|1|0.09|ENSG00000165606|chr10:49366268-49366268|G/-|frameshift_variant 1.844237919475145 0.33703635659052655 1 {I|L}N 2 -1 6.1979 0 0 0.51192 0 0 661.4222253998672 319.15427576236567 980.576501162233 0 0 0 0 0 0 0 0 0 {I|L}N 0.51192 - 49 + NaN NaN 493926.4 NaN 22662 5513 28174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28179 109.52 NaN 2704300 35 0 727590 0.327 -1 0 104 425.28597430828506 424.2786978416851 1 425.2743835449219 MULTI HCD FTMS 0 0 0 28178 456493.71875 0.7332937934219509 2 -0.04522705078125 1 NaN NaN 1 S 1 -1 2.4743 0 0 0.58317 0 0 166.11706230467342 168.11110864810783 334.2281709527813 0 0 0 0 0 0 0 0 0 S 0.58317 - 10 + NaN NaN 487957.9 NaN 22663 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28180 109.52 NaN 1628600 35 0 488750 0.261 + 30170 VHALVARK 8 79 447.28750528266727 892.5604576321346 2 447.2875061035156 MULTI HCD FTMS 0 0 0 28178 1460065 1 0 0 2 Unmodified _VHALVARK_ REV__ENSG00000162729|ENST00000314485|IGSF8;REV__nc|ENSG00000162729|Q969P0-3|IGSF8 2.577480529830294 0.5381683276125971 1 N 1 -1 7.2185 0 0 0.80874 0 0 188.14964327842205 587.3280181747723 775.4776614531943 0 0 0 0 0 0.2614393726401688 0 0 0 N 0.80874 - 13 + NaN NaN 329071.5 NaN 22664 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28181 109.53 NaN 1486500 35 0 151190 0.261 -1 0 66 408.24357237817304 814.4725918231461 2 408.24365234375 MULTI HCD FTMS 0 0 0 28178 893126.1875 0.8153963865377722 1 -0.029296875 3 NaN NaN 1 RNC 3 -1 10.177 0 0 1.2496 0 0 222.14875256708984 216.14736353092033 438.2961160980102 0 0 0 0 0 0.3494850021680094 0 0 0 RNC 1.2496 - 43 + NaN NaN 310761.8 NaN 22665 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28182 109.53 NaN 1166400 35 0 190320 0.261 + 407 AKGRRIPL 8 65 455.80088895238237 909.5872249715648 2 455.8009948730469 MULTI HCD FTMS 0 0 0 28178 876649 0.8552681514811235 2 -0.04522705078125 4 Unmodified _AKGRRIPL_ ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3 2.8892196856762586 0.5377058178582064 1 {I|L} 1 7 14.604 0 0 1.6056 0 0 778.4922980690242 0 778.4922980690242 0 12.821357152192812 0 0 0 0 0 0 0 + {I|L} 1.6056 + + 16 + NaN NaN 259530.8 NaN 22666 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28183 109.53 NaN 286250 35 0 85767 0.261 + 28424 TPIIIAKK 8 42 442.30080344354684 NaN 0 442.301025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TPIIIAKK_ REV__tr|U7SXX5|U7SXX5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00872PE=4SV=1 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122466.8 NaN 22667 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28184 109.54 NaN 3112300 35 0 1379900 0.261 + -1 LKHSTFRLPM 10 68 623.3434298296804 1244.6723067261607 2 623.3443603515625 MULTI HCD FTMS 0 0 0 28178 885000.4375 1 0 0 6 Oxidation (M) _LKHSTFRLPM(Oxidation (M))_ REV__ENST00000366899.3_1_1:221875542-221875581:-|nuORF 3.2813086475875832 0.45793521633868084 1 H 1 -1 3.9794 0 0 0.31971 0 0 452.31261814439625 652.2667940729124 1104.5794122173086 0 0 0 0 0 0 0 0 0 H 0.31971 + + 45 + NaN NaN 555972.2 NaN 22668 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28185 109.54 NaN 332340 35 0 35308 0.261 -1 RSPLPLLVLC 10 68 584.3484459825344 NaN 0 584.3488159179688 PEAK HCD FTMS 0 0 0 28178 205016.828125 0.6482615516704556 1 -0.029296875 7 Carbamidomethyl (C) _RSPLPLLVLC(Carbamidomethyl (C))_ ENST00000546136.5_1_12:23687301-23689558:-|nuORF 3.5964929083625545 0.337106189561315 1 A 1 -1 1.1092 0 0 0.095077 0 0 719.5149328812812 373.1160982721313 1092.6310311534126 0 0 0 0 0 0 0 0 0 A 0.095077 - 7 + NaN NaN 130161.5 NaN 22669 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28186 109.54 NaN 629790 35 0 68710 0.261 + 23084 RELPCIRKF 9 64 581.3326783797567 NaN 0 581.3524780273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RELPCIRKF_ ENSG00000235034|ENST00000425202|C19orf81 3.5964929083625545 0.27781873954207675 1 H 1 9 5.4846 0 0 0.47254 0 0 315.2280374558225 705.3449190729124 1020.572956528735 0 0 0 0 0 0 0 0 0 H 0.47254 - 6 + NaN NaN 175690.7 NaN 22670 5514 28178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28188 109.55 NaN 385810 35 0 77357 0.327 + 11702 KALNPKRK 8 65 477.8141815767201 953.6138102202402 2 477.81414794921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KALNPKRK_ REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF 2.577480529830294 0.5381683276125971 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 140402.2 NaN 22671 5515 28187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28189 109.55 NaN 384030 35 0 154350 0.261 + 26294 SRPPLLRPLS 10 48 568.353332020897 1134.692111108594 2 568.3535766601562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SRPPLLRPLS_ ENSG00000103319|ENST00000263026|EEF2K;ENST00000563555.1_1_16:22268974-22274610:+|nuORF 2.9952420565917617 0.4594494122822477 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 136060.6 NaN 22672 5515 28187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28190 109.56 NaN 154840 35 0 62718 0.261 + 14287 LDAKLVDIKH 10 41 576.3421761073714 1150.6697992815427 2 576.3427734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LDAKLVDIKH_ REV__ENSG00000053328|ENST00000338882|METTL24 1.1933415558491238 0.46898715808974617 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 102997.6 NaN 22673 5515 28187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28191 109.56 NaN 384550 35 0 69926 0.261 + 25816 SLPPPVKRPR 10 51 573.8566284179688 NaN 0 573.8566284179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SLPPPVKRPR_ ENSG00000101216|ENST00000370077|GMEB2 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 139520.9 NaN 22674 5515 28187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28194 109.57 NaN 3405100 35 0 642850 0.327 + 21010 PLPAKLAL 8 165 411.7747674684112 821.5349820036224 2 411.7749938964844 MULTI HCD FTMS 0 0 0 28193 1948187.625 0.834912357109223 -1 0.006927490234375 1 Unmodified _PLPAKLAL_ ENSG00000131183|ENST00000324417|SLC34A1;nc|ENSG00000131183|Q06495-2|SLC34A1 0.7936320650641473 0.540814922690045 1 V 1 8 2.4743 0 0 0.30117 0 0 428.23198625342553 291.21177087955317 719.4437571329787 0 0 0 0 0 0 0 0 0 V 0.30117 - 43 + NaN NaN 558621.4 NaN 22675 5517 28193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28195 109.57 NaN 5496200 35 0 1413500 0.261 -1 0 103 403.76336530040305 805.5121776676061 2 403.7632751464844 MULTI HCD FTMS 0 0 0 28193 1398014 0.9008605774342485 1 -0.01880645751953125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 19 NaN NaN 924893.6 NaN 22676 5517 28193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28196 109.58 NaN 521700 35 0 82491 0.261 + 23635 RPSPRSGEKR 10 80 585.328344472396 NaN 0 585.328369140625 PEAK HCD FTMS 0 0 0 28193 108968.2890625 0.31042338385531626 1 -0.01880645751953125 3 Unmodified _RPSPRSGEKR_ REV__ENST00000504148.2_1_11:111955888-111956080:-|nuORF 3.2813086475875832 0.33737594360511275 1 E 1 -1 1.5938 0 0 0.13638 0 0 490.2374251735044 546.3364351861936 1036.573860359698 0 0 0 0 0 0 0 0 0 E 0.13638 + + 11 + NaN NaN 162793.8 NaN 22677 5517 28193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28197 109.58 NaN 45210 35 0 10787 0.261 -1 MRRKLRKH 8 24 570.8478753618341 1139.681197790468 2 570.847412109375 MULTI HCD FTMS 0 0 0 28193 156301.6875 0.7936732786615096 -1 0.006927490234375 4 Oxidation (M) _M(Oxidation (M))RRKLRKH_ ENSG00000248329|ENST00000507152|APELA 0.6903765706972694 0.5409681170271811 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88070.5 NaN 22678 5517 28193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28198 109.59 NaN 114570 35 0 23857 0.261 + 7081 FRALLFLHE 9 33 573.3271089094723 NaN 0 573.3267822265625 PEAK HCD FTMS 0 0 0 28193 59400.67578125 0.639550067447573 1 -0.01880645751953125 5 Unmodified _FRALLFLHE_ REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF 1.844237919475145 0.28630992268396543 1 {M(Oxidation (M))|F} 1 -1 0.71334 0 0 0.06232 0 0 624.3541557078132 370.2179354303344 994.5720911381477 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.06232 + + 2 + NaN NaN 102540.7 NaN 22679 5517 28193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28201 109.6 NaN 3481100 35 0 641760 0.327 + 11694 KAIPPLAI 8 134 411.7747674684112 821.5349820036224 2 411.77484130859375 MULTI HCD FTMS 0 0 0 28200 1764985 0.7563993158063623 1 -0.008880615234375 1 Unmodified _KAIPPLAI_ REV__ENSG00000172915|ENST00000379939|NBEA;REV__ENSG00000198589|ENST00000651943|LRBA;REV__LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;REV__nc|ENSG00000172915|Q8NFP9|NBEA;REV__nc|ENSG00000198589|P50851-2|LRBA;REV__nc|ENSG00000198589|P50851|LRBA 0.7936320650641473 0.540814922690045 1 V 1 -1 3.0989 0 0 0.37721 0 0 428.23201677100366 291.21161829166255 719.4436350626662 0 0 0 0 0 0 0 0 0 V 0.37721 - 49 + NaN NaN 406578.1 NaN 22680 5519 28200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28202 109.6 NaN 1627000 35 0 984680 0.261 + 28174 TKKLFRALST 10 51 582.8596157923399 1163.7046786514798 2 582.8590087890625 MULTI HCD FTMS 0 0 0 28200 355254.59375 0.22677423408830674 -7 0.10276031494140625 2 Unmodified _TKKLFRALST_ REV__ENSG00000091536|ENST00000647165|MYO15A;REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF 3.2813086475875832 0.45793521633868084 1 N 1 -1 3.4949 0 0 0.30032 0 0 637.3444014071423 409.29316126041255 1046.637562667555 0 0 0 0 0 0 0 0 0 N 0.30032 - 11 + NaN NaN 331784.4 NaN 22681 5519 28200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28204 109.61 NaN 392950 35 0 46488 0.327 + 26291 SRLIVHTIVF 10 67 592.8619087649902 1183.7092645967803 2 593.3639526367188 MULTI HCD FTMS 0 0 0 28203 226184.359375 0.8086173010754827 2 -0.02349853515625 1 Unmodified _SRLIVHTIVF_ REV__ENSG00000175048|ENST00000359775|ZDHHC14;REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14 5.296884461304476 0.4472664531305844 1 {M(Oxidation (M))|F}HS{[DS]|[MA]|[CV]|TT} 5 -1 14.425 0 0 1.2186 0 0 592.380662986525 0 592.380662986525 0 6.977437731477421 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}HS{[DS]|[MA]|[CV]|TT} 1.2186 - 11 NaN NaN 156351.7 NaN 22682 5520 28203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28205 109.61 NaN 365760 35 0 188990 0.261 + 23966 RVLYVFTKK 9 43 577.3567081669972 1152.6988634007944 2 577.3571166992188 MULTI HCD FTMS 0 0 0 28203 214970.34375 0.8075295378826448 2 -0.02349853515625 2 Unmodified _RVLYVFTKK_ ENSG00000205495|ENST00000380370|OR52J3 1.6526216038709556 0.33848895094777925 1 K 1 8 0.9691 0 0 0.084072 0 0 636.3708737541132 385.2158602350219 1021.5867339891352 0 0 0 0 0 0 0 0 0 + K 0.084072 + + 1 + NaN NaN 139926.8 NaN 22683 5520 28203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28206 109.61 NaN 769620 35 0 438900 0.261 + 9564 HRPIIRTKK 9 48 574.8707700913213 1147.7269872494426 2 574.870849609375 MULTI HCD FTMS 0 0 0 28203 383545.96875 0.4863370796454286 -5 0.05748748779296875 3 Unmodified _HRPIIRTKK_ REV__ENSG00000164508|ENST00000297012|H2AC1;REV__ENSG00000180573|ENST00000377791|H2AC6;REV__ENSG00000181218|ENST00000689584|H2AC25;REV__ENSG00000184260|ENST00000331380|H2AC20;REV__ENSG00000184270|ENST00000331128|H2AC21;REV__ENSG00000188486|ENST00000530167|H2AX;REV__ENSG00000196747|ENST00000358739|H2AC13;REV__ENSG00000196787|ENST00000359193|H2AC11;REV__ENSG00000196866|ENST00000341023|H2AC7;REV__ENSG00000246705|ENST00000544848|H2AJ;REV__ENSG00000274997|ENST00000377459|H2AC12;REV__ENSG00000276368|ENST00000333151|H2AC14;REV__ENSG00000276903|ENST00000613174|H2AC16;REV__ENSG00000277075|ENST00000303910|H2AC8;REV__ENSG00000278463|ENST00000615868|H2AC4;REV__ENSG00000278677|ENST00000359611|H2AC17;REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF;REV__nc|ENSG00000246705|Q9BTM1-2|H2AJ;REV__nc|ENSG00000288859|Q6FI13|H2AC18 1.6526216038709556 0.33848895094777925 1 H 1 -1 3.0989 0 0 0.27001 0 0 592.5091972854393 415.1436861627563 1007.6528834481956 0 0 0 0 0 0 0 0 0 H 0.27001 + + 1 + NaN NaN 198785 NaN 22684 5520 28203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28207 109.62 NaN 200630 35 0 109320 0.261 + 16001 LPRARPWLES 10 33 612.8447875976562 NaN 0 612.8447875976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPRARPWLES_ REV__ENSG00000080603|ENST00000262518|SRCAP;REV__nc|ENSG00000080603|Q6ZRS2-2|SRCAP;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP;REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;REV__SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant 1.6526216038709556 0.33876987398426067 1 M 1 -1 5.4846 0 0 0.4482 0 0 647.3147087873061 442.2951754205688 1089.609884207875 0 0 0 0 0 0 0 0 0 M 0.4482 - 3 + NaN NaN 118666.5 NaN 22685 5520 28203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28210 109.63 NaN 300680 35 0 27300 0.411 + 28189 TKPLAPLLAE 10 84 526.8221826968899 NaN 0 526.8218994140625 PEAK HCD FTMS 0 0 0 28209 10717.78125 0.09503249615436889 2 -0.01506805419921875 1 Unmodified _TKPLAPLLAE_ REV__ENSG00000166682|ENST00000299882|TMPRSS5;REV__ENST00000538091.1_1_11:113569612-113570777:-|nuORF 5.731851221503515 0.33527861879838866 1 V 1 -1 5.4846 0 0 0.52153 0 0 444.25092209431904 505.2965482264594 949.5474703207784 0 0 0 0 0 0 0 0 0 V 0.52153 - 15 + NaN NaN 175335.2 NaN 22686 5522 28209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28212 109.64 NaN 1875000 35 0 1136300 0.411 + 28175 TKKLFRALST 10 47 582.8596157923399 1163.7046786514798 2 582.8604736328125 MULTI HCD FTMS 0 0 0 28211 340249.84375 0.21719605903075614 -3 0.0313262939453125 1 Unmodified _TKKLFRALST_ REV__ENSG00000091536|ENST00000647165|MYO15A;REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF 3.2813086475875832 0.45793521633868084 1 N 1 -1 6.9897 0 0 0.60064 0 0 637.3439131258923 409.2951031439396 1046.639016269832 0 0 0 0 0 0 0 0 0 N 0.60064 - 6 + NaN NaN 649147.1 NaN 22687 5523 28211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28215 109.65 NaN 423440 35 0 99678 0.411 + 11711 KATHLSKLKI 10 61 569.87060546875 NaN 0 569.87060546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KATHLSKLKI_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|34|1|sense 1.4819007175156935 0.33891598740166873 1 C(Carbamidomethyl (C)) 1 -1 0.9691 0 0 0.085229 0 0 794.8915580548843 179.1072939508422 973.9988520057265 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.085229 - 5 + NaN NaN 221311.2 NaN 22688 5525 28214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28237 109.78 NaN 891070 35 0 89507 0.327 -1 0 115 526.8220634067031 1051.6295738802062 2 526.8228149414062 MULTI HCD FTMS 0 0 0 28236 697902.5625 0.6013627874213187 1 -0.00606536865234375 1 NaN NaN 1 W 1 -1 10 0 0 0.95091 0 0 847.5381107227828 0 847.5381107227828 0 4.158781176037891 0 0 0 0 0 0 0 W 0.95091 - 103 + NaN NaN 277956.2 NaN 22689 5546 28236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28241 109.8 NaN 1133500 35 0 133960 0.327 + 12005 KGKMPLRGPL 10 128 548.8354728856779 1095.6563928381556 2 548.8352661132812 MULTI HCD FTMS 0 0 0 28240 978857.25 0.8376472073195712 1 -0.00609588623046875 1 Unmodified _KGKMPLRGPL_ ENSG00000198042|ENST00000360128|MAK16 9.38312468134398 0.42334543440173333 1 SA 2 10 20.701 0 0 1.8894 0 0 919.5516372184452 0 919.5516372184452 0 12.67220322351953 0 0 0 0.4247425010840047 0 0 0 SA 1.8894 - 102 NaN NaN 301303.8 NaN 22690 5549 28240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28244 109.81 NaN 771710 35 0 123160 0.411 + 12003 KGFRRRAHL 9 120 570.8483458210961 1139.6821387089922 2 570.84814453125 MULTI HCD FTMS 0 0 0 28243 134346.84375 0.18804896106544453 3 -0.0195465087890625 1 Unmodified _KGFRRRAHL_ ENSG00000218891|ENST00000325421|ZNF579 7.289230182591677 0.29575926068275815 1 K 1 8 5.7577 0 0 0.5052 0 0 743.4479600974672 265.12290369205317 1008.5708637895204 0 0 0 0 0 0.566901560044258 0 0 0 + K 0.5052 + + 57 + NaN NaN 321304.6 NaN 22691 5551 28243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28247 109.82 NaN 1271800 35 0 170020 0.327 -1 0 112 504.8091778658181 1007.6038027984363 2 504.8095703125 MULTI HCD FTMS 0 0 0 28246 1151356.875 0.8569121223761595 -8 0.05071258544921875 1 NaN NaN 1 P 1 -1 8.9794 0 0 0.89116 0 0 220.13135643402296 687.4143598580858 907.5457162921089 0 0 0 0 0 0.5 0 0 0 P 0.89116 - 79 + NaN NaN 288337.1 NaN 22692 5553 28246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28249 109.83 NaN 684790 35 0 79973 0.327 + 26595 SVVAVFVR 8 128 438.76962246095184 NaN 0 438.7699279785156 PEAK HCD FTMS 0 0 0 28248 306840.5 0.5687245341176359 5 -0.03252410888671875 1 Unmodified _SVVAVFVR_ ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant 5.230669730166228 0.38822285293237185 1 V 1 7 3.0989 0 0 0.35395 0 0 356.1979840803037 417.2244051568969 773.4223892372006 0 0 0 0 0 0 0 0 0 + V 0.35395 + + 5 + NaN NaN 236830.4 NaN 22693 5554 28248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28251 109.84 NaN 1402800 35 0 152370 0.327 + 12390 KPGIIGPVSP 10 131 482.79551803063725 963.5764831280745 2 482.795654296875 MULTI HCD FTMS 0 0 0 28250 543210.875 0.3741888081245289 -5 0.03218841552734375 1 Unmodified _KPGIIGPVSP_ REV__ENST00000560342.5_1_14:24616937-24618114:+|nuORF 6.2057823575117 0.44245551207394906 1 K 1 -1 10.485 0 0 1.0881 0 0 817.467411328073 0 817.467411328073 0 3.7628749457997657 0 0 0 0 0 0 0 K 1.0881 + + 53 + NaN NaN 343761.2 NaN 22694 5555 28250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28254 109.85 NaN 506120 35 0 32026 0.411 + 20681 PFLPKLREV 9 127 549.8385991047953 NaN 0 549.8377685546875 PEAK HCD FTMS 0 0 0 28253 72211.59375 0.2023088431909061 2 -0.01348876953125 1 Unmodified _PFLPKLREV_ REV__ENSG00000185215|ENST00000560869|TNFAIP2 7.289230182591677 0.2599242500475609 1 A 1 -1 4.8464 0 0 0.44152 0 0 106.0693968406468 917.5347301623393 1023.6041270029862 0 0 0 0 0 0.1747425010840047 0 0 0 A 0.44152 - 19 + NaN NaN 240285.9 NaN 22695 5557 28253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28260 109.88 NaN 1351200 35 0 145640 0.327 -1 0 102 460.78263732862985 919.5507217240597 2 460.78271484375 MULTI HCD FTMS 0 0 0 28259 518972.0625 0.36621625757820464 -5 0.03208160400390625 1 NaN NaN 1 R 1 -1 3.4332 0 0 0.37336 0 0 459.3621974094097 301.06675134830317 760.4289487577129 0 0 0 0 0 0.3054621874040891 0 0 0 R 0.37336 - 27 + NaN NaN 287354.6 NaN 22696 5562 28259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28261 109.89 NaN 1445200 35 0 329390 0.261 + 25315 SCFAPRVPDR 10 78 574.2855606142583 1146.5565682953165 2 574.2845458984375 MULTI HCD FTMS 0 0 0 28259 362487 0.6807116602695081 -3 0.01859283447265625 2 Unmodified _SCFAPRVPDR_ ENSG00000109618|ENST00000382103|SEPSECS;ENST00000505513.1_1_4:25146420-25156786:-|nuORF;nc|ENSG00000109618|Q9HD40-3|SEPSECS 5.296884461304476 0.4472664531305844 1 Y 1 10 4.6041 0 0 0.40156 0 0 353.21726042939287 627.2615450494749 980.4788054788678 0 0 0 0 0 0 0 0 0 Y 0.40156 - 20 + NaN NaN 299103.1 NaN 22697 5562 28259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28262 109.89 NaN 798570 35 0 72607 0.261 + 28331 TNKFLPGLP 9 94 493.78677543289865 985.5589979325973 2 493.7870178222656 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TNKFLPGLP_ REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF 3.944395688203298 0.32111559684428237 1 {I|L} 1 -1 3.0989 0 0 0.31444 0 0 622.3492401247298 247.0981386774047 869.4473788021345 0 0 0 0 0 0 0 0 0 {I|L} 0.31444 + + 75 + NaN NaN 205157.1 NaN 22698 5562 28259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28265 109.9 NaN 7231600 35 0 4717400 0.323 + 23236 RGFKKKSVF 9 92 548.8354728856779 1095.6563928381556 2 548.318359375 MULTI HCD FTMS 0 0 0 28264 134119.140625 0.35004034774586024 8 -0.05916595458984375 1 Unmodified _RGFKKKSVF_ ENSG00000198046|ENST00000504904|ZNF667 3.5964929083625545 0.32375295897743744 1 SA 2 8 19.706 0 0 1.7986 0 0 919.5533924787125 0 919.5533924787125 0 8.4471653193118 0 0 0 0.3252574989159953 0 0 0 SA 1.7986 - 44 NaN NaN 1178620 NaN 22699 5564 28264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28266 109.91 NaN 994260 35 0 81270 0.262 + 21235 PRFGRLPPL 9 98 526.8220634067031 1051.6295738802062 2 526.822021484375 MULTI HCD FTMS 0 0 0 28264 392871.78125 0.33852643931462645 19 -0.13239288330078125 2 Unmodified _PRFGRLPPL_ ENST00000360635.7_1_2:9563104-9563296:-|nuORF 4.3292370932331545 0.3181982124262546 1 {M(Oxidation (M))|F} 1 8 6.2591 0 0 0.59518 0 0 121.08824447847378 780.4620455377561 901.55029001623 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.59518 + + 31 + NaN NaN 236647.9 NaN 22700 5564 28264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28268 109.91 NaN 1187600 35 0 320990 0.327 + 25316 SCFAPRVPDR 10 68 574.2855606142583 1146.5565682953165 2 574.2860717773438 MULTI HCD FTMS 0 0 0 28267 532511.8125 1 0 0 1 Unmodified _SCFAPRVPDR_ ENSG00000109618|ENST00000382103|SEPSECS;ENST00000505513.1_1_4:25146420-25156786:-|nuORF;nc|ENSG00000109618|Q9HD40-3|SEPSECS 5.296884461304476 0.4472664531305844 1 W 1 10 4.2917 0 0 0.37432 0 0 626.2648335314478 331.19112118209665 957.4559547135445 0 0 0 0 0 0.3807196863200844 0 0 0 W 0.37432 - 16 + NaN NaN 277364 NaN 22701 5565 28267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28269 109.92 NaN 909150 35 0 60824 0.261 + 5555 FLIQQPQI 8 94 493.78677543289865 985.5589979325973 2 493.78704833984375 MULTI HCD FTMS 0 0 0 28267 306184.78125 0.7374212230628692 -6 0.04746246337890625 2 Unmodified _FLIQQPQI_ REV__ENSG00000165417|ENST00000553612|GTF2A1;REV__ENST00000298173.7_1_14:81646569-81676264:-|nuORF;REV__nc|ENSG00000165417|P52655-2|GTF2A1 2.302733041254933 0.5385759549224092 1 Q 1 -1 4.6041 0 0 0.46716 0 0 509.2808740085723 345.2044591503009 854.4853331588732 0 0 0 0 0 0 0 0 0 Q 0.46716 + + 39 + NaN NaN 222567.5 NaN 22702 5565 28267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28273 109.93 NaN 445910 35 0 34060 0.411 + -1 KAGCKRHI 8 118 485.2733169787922 NaN 0 485.2729797363281 PEAK HCD FTMS 0 0 0 28272 48958.5234375 0.17310681363451738 -2 0.01300048828125 1 Carbamidomethyl (C) _KAGC(Carbamidomethyl (C))KRHI_ REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1 2.577480529830294 0.38822285293237185 1 K 1 -1 3.0989 0 0 0.31996 0 0 688.4375203327813 148.97272669010002 837.4102470228813 0 0 0 0 0 0 0 0 0 K 0.31996 + + 4 + NaN NaN 218585.8 NaN 22703 5568 28272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28276 109.95 NaN 1172300 35 0 130050 0.335 -1 0 142 504.8091778658181 1007.6038027984363 2 504.8086242675781 MULTI HCD FTMS 0 0 0 28275 368198.53125 0.27403647967032135 9 -0.060028076171875 1 NaN NaN 1 SA 2 -1 18.94 0 0 1.8797 0 0 831.4998821583779 0 831.4998821583779 0 10.713337517843655 0 0 0 0.4247425010840047 0 0 0 SA 1.8797 - 122 NaN NaN 350853 NaN 22704 5570 28275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28279 109.96 NaN 1179600 35 0 240920 0.325 + 21228 PQVIAVPQL 9 107 482.79551803063725 963.5764831280745 2 482.7955627441406 MULTI HCD FTMS 0 0 0 28278 355935.3125 0.2451847274850798 12 -0.0800323486328125 1 Unmodified _PQVIAVPQL_ ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF 4.3292370932331545 0.3181982124262546 1 K 1 9 12.474 0 0 1.2946 0 0 817.4672892577605 0 817.4672892577605 0 1.9897000433601875 0 0 0 0 0 0 0 K 1.2946 - 65 + NaN NaN 293366 NaN 22705 5572 28278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28293 110.05 NaN 1178500 35 0 157380 0.327 + 25287 SAVVRVFV 8 129 438.769110440589 875.523667947978 2 438.7695617675781 MULTI HCD FTMS 0 0 0 28292 700635.0625 0.5086264252905209 7 -0.0467529296875 1 Unmodified _SAVVRVFV_ REV__ENSG00000005339|ENST00000262367|CREBBP;REV__nc|ENSG00000005339|Q92793-2|CREBBP 4.75600775471527 0.5349361699807423 1 D 1 -1 5.4846 0 0 0.62643 0 0 197.13580281301546 560.3279512994749 757.4637541124903 0 0 0 0 0 0 0 0 0 D 0.62643 - 36 + NaN NaN 262644.9 NaN 22706 5585 28292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28304 110.11 NaN 644040 35 0 30127 0.355 -1 0 119 504.8091778658181 1007.6038027984363 2 504.8092346191406 MULTI HCD FTMS 0 0 0 28303 103384.5546875 0.07694528091316584 34 -0.23082733154296875 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.45693 0 0 356.2012245095853 501.3041170709594 857.5053415805447 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45693 - 12 + NaN NaN 235903 NaN 22707 5595 28303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28307 110.13 NaN 541410 35 0 81778 0.405 -1 0 82 589.0096954241887 NaN 0 589.0095825195312 PEAK HCD FTMS 0 0 0 28306 389919.375 0.40680822172919856 4 -0.02750396728515625 1 NaN NaN 1 Q 1 -1 2.7642 0 0 0.23505 0 0 605.6065192177135 439.30478845767817 1044.9113076753918 0 0 0 0 0 0 0 0 0 Q 0.23505 - 9 + NaN NaN 241033.2 NaN 22708 5597 28306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28312 110.16 NaN 683380 35 0 36617 0.411 + 10647 IPVAQVLRN 9 131 505.31301504236075 NaN 0 505.3124084472656 PEAK HCD FTMS 0 0 0 28311 127529.890625 0.6721727718206886 11 -0.073822021484375 1 Unmodified _IPVAQVLRN_ ENSG00000153933|ENST00000284061|DGKE 4.3292370932331545 0.2742679634796037 1 {M(Oxidation (M))|F}K 2 9 8.6494 0 0 0.85755 0 0 357.20721557230894 373.19956384830317 730.4067794206121 0 0 0 0 0 0 0 0 0.28872548999643577 {M(Oxidation (M))|F}K 0.85755 - 18 + NaN NaN 290986.9 NaN 22709 5601 28311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28334 110.3 NaN 1055100 35 0 89789 0.36 -1 0 166 447.23718426104347 446.2299077944435 1 449.2508850097656 MULTI HCD FTMS 0 0 0 28333 376080.59375 0.7742027892990173 -12 0.08023834228515625 1 NaN NaN 1 N 1 -1 2.7642 0 0 0.61946 0 0 112.05432293291848 217.10805689029533 329.1623798232138 0 0 0 0 0 0 0 0 0 N 0.61946 - 17 + NaN NaN 347742.2 NaN 22710 5622 28333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28379 110.58 NaN 1982200 35 0 1332700 0.412 -1 0 52 625.2471787039448 624.2399022373447 1 625.2464599609375 MULTI HCD FTMS 0 0 0 28378 272526.28125 0.6717738380261429 -4 0.02582550048828125 1 NaN NaN 1 AT 2 -1 3.9794 0 0 0.63748 0 0 86.03702571888194 363.10602747135005 449.14305319023197 0 0 0 0 0 0 0 0 0 AT 0.63748 - 12 + NaN NaN 684527.9 NaN 22711 5666 28378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28398 110.71 NaN 1780000 35 0 419670 0.327 -1 0 87 458.84736620915953 915.6801794851191 2 458.84710693359375 MULTI HCD FTMS 0 0 0 28397 440501.8125 1 0 0 1 NaN NaN 1 T 1 -1 8.4113 0 0 0.91858 0 0 374.3164842720316 437.3021701097643 811.6186543817959 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.91858 - 12 + NaN NaN 401832.1 NaN 22712 5684 28397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28401 110.72 NaN 8378700 35 0 1977900 0.327 + -1 RSFACMFWET 10 78 450.85816801382083 NaN 0 450.8498840332031 PEAK HCD FTMS 0 0 0 28400 132174.484375 0.6919346664284738 1 -0.01238250732421875 1 Carbamidomethyl (C),Oxidation (M) _RSFAC(Carbamidomethyl (C))M(Oxidation (M))FWET_ REV__ENSG00000099992|ENST00000215790|TBC1D10A;REV__ENST00000462073.5_1_22:30689736-30691829:-|nuORF;REV__ENST00000466666.5_1_22:30689582-30690835:-|nuORF;REV__nc|ENSG00000099992|Q9BXI6-2|TBC1D10A;REV__TBC1D10A|p.K472Rfs*22|1|0.17|ENSG00000099992|chr22:30292474-30292489|GGGGGCTGAGTCCTTC/-|frameshift_variant;REV__TBC1D10A|p.P465Afs*35|1|0.1|ENSG00000099992|chr22:30292496-30292509|ACATGCTGTGGGGG/-|frameshift_variant 1.9063754702782614 0.33855269584400594 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 913022.6 NaN 22713 5686 28400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28402 110.72 NaN 2811200 35 0 1805000 0.261 -1 0 50 594.4737473742358 593.4664709076358 1 594.4728393554688 MULTI HCD FTMS 0 0 0 28400 1445309.125 0.4522920984884627 -3 0.020294189453125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.67053 0 0 92.37053692501702 351.0388582818969 443.4093952069139 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.67053 - 2 + NaN NaN 503300.2 NaN 22714 5686 28400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28403 110.73 NaN 1502700 35 0 705690 0.263 -1 0 57 472.3743922104765 NaN 0 472.374267578125 PEAK HCD FTMS 0 0 0 28400 410751.625 0.7338150157029316 -9 0.063018798828125 3 NaN NaN 1 R 1 -1 0.9691 0 0 0.1028 0 0 615.5056986281812 168.11098657779533 783.6166852059765 0 0 0 0 0 0 0 0 0 R 0.1028 - 6 + NaN NaN 310248.4 NaN 22715 5686 28400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28405 110.73 NaN 2227100 35 0 611970 0.326 -1 0 60 458.84736620915953 915.6801794851191 2 459.83612060546875 MULTI HCD FTMS 0 0 0 28404 26159.453125 0.17175913576953855 3 -0.02263641357421875 1 NaN NaN 1 R 1 -1 0.71334 0 0 0.077902 0 0 601.4632738228129 155.08649622135002 756.5497700441629 0 0 0 0 0 0 0 0 0 R 0.077902 - 10 + NaN NaN 417316.2 NaN 22716 5687 28404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28408 110.75 NaN 1713600 35 0 304870 0.327 -1 0 62 603.9607666270848 NaN 0 603.9605102539062 PEAK HCD FTMS 0 0 0 28407 619833 0.8411142236387432 -2 0.013641357421875 1 NaN NaN 1 A 1 -1 2.2185 0 0 0.18397 0 0 593.5069417821189 538.3320646887324 1131.8390064708515 0 0 0 0 0 0 0 0 0 A 0.18397 - 2 + NaN NaN 358423.3 NaN 22717 5689 28407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28409 110.75 NaN 1309100 35 0 525750 0.261 -1 0 69 586.484221951233 585.476945484633 1 586.4844360351562 MULTI HCD FTMS 0 0 0 28407 712488.625 0.7403106561952165 -1 0.00673675537109375 2 NaN NaN 1 H 1 -1 1.9897 0 0 0.33984 0 0 179.18496658013925 266.2120455377563 445.39701211789554 0 0 0 0 0 0 0 0 0 H 0.33984 - 6 + NaN NaN 279492.9 NaN 22718 5689 28407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28425 110.85 NaN 1127400 35 0 146310 0.367 + 12421 KPITIKSS 8 143 437.2745699715309 NaN 0 437.2627868652344 PEAK HCD FTMS 0 0 0 28424 87945.375 0.537450438530027 6 -0.03830718994140625 1 Unmodified _KPITIKSS_ REV__ENSG00000144837|ENST00000273371|PLA1A;REV__nc|ENSG00000144837|Q53H76-3|PLA1A;REV__nc|ENSG00000144837|Q53H76-4|PLA1A 2.577480529830294 0.38822285293237185 1 C 1 -1 5.4846 0 0 0.62858 0 0 333.22448066396186 433.2779635065063 766.5024441704682 0 0 0 0 0 0 0 0 0 C 0.62858 - 10 + NaN NaN 374915.4 NaN 22719 5704 28424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28444 110.96 NaN 808450 35 0 109980 0.383 -1 0 118 470.36836237156194 469.36108590496195 1 471.79541015625 MULTI HCD FTMS 0 0 0 28443 36278.16015625 0.588286241088174 -1 0.00621795654296875 1 NaN NaN 1 A 1 -1 3.9794 0 0 0.84783 0 0 71.13053888523383 324.17475814549283 395.30529703072665 0 0 0 0 0 0 0 0 0 A 0.84783 - 34 + NaN NaN 311338.4 NaN 22720 5722 28443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28447 110.97 NaN 551540 35 0 126390 0.411 -1 0 76 456.3168462256809 910.6191395181618 2 456.31634521484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 {I|L} 1 -1 2.4743 0 0 0.27171 0 0 278.2222163943699 516.3050020807249 794.5272184750947 0 0 0 0 0 0 0 0 0 {I|L} 0.27171 - 6 + NaN NaN 250628.1 NaN 22721 5724 28446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28453 111.01 NaN 796480 35 0 141610 0.327 + 5072 FDWSDKYIKT 10 67 434.88234526759396 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 28452 856004.75 0.7152078582191841 -6 0.0396575927734375 1 Unmodified _FDWSDKYIKT_ REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF;REV__nc|ENSG00000168405|Q9Y471-4|CMAHP;REV__nc|ENSG00000168405|Q9Y471|CMAHP 0.6268255596534771 0.33964781322640114 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 199057.6 NaN 22722 5729 28452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28454 111.01 NaN 1120900 35 0 138860 0.261 -1 0 71 447.80343524704256 893.5923175608851 2 447.80352783203125 MULTI HCD FTMS 0 0 0 28452 688603.25 0.6956470239409137 -7 0.04608917236328125 2 NaN NaN 1 A 1 -1 3.9794 0 0 0.44533 0 0 303.2391203946726 516.3021334283811 819.5412538230537 0 0 0 0 0 0 0 0 0 A 0.44533 - 6 + NaN NaN 250512.5 NaN 22723 5729 28452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28455 111.02 NaN 461910 35 0 87661 0.261 -1 0 69 458.79432093958343 915.5740889459669 2 458.7945556640625 MULTI HCD FTMS 0 0 0 28452 408668.40625 0.7295091130421549 -7 0.04608917236328125 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.59903 0 0 200.22618439267666 565.2833956354124 765.509580028089 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.59903 - 5 + NaN NaN 163566.8 NaN 22724 5729 28452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28459 111.03 NaN 1017600 35 0 140340 0.327 -1 0 55 447.80343524704256 893.5923175608851 2 447.8035888671875 MULTI HCD FTMS 0 0 0 28458 690658.125 0.6977229184103642 -4 0.03176116943359375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 250465.5 NaN 22725 5732 28458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28468 111.08 NaN 2126700 35 0 400050 0.345 -1 0 107 434.3038680054901 866.5931830777802 2 434.3035888671875 MULTI HCD FTMS 0 0 0 28467 1202578.625 0.732082036832581 -4 0.025115966796875 1 NaN NaN 1 A 1 -1 3.9794 0 0 0.4592 0 0 232.21493174890833 560.3289888971311 792.5439206460394 0 0 0 0 0 0 0 0 0 A 0.4592 - 19 + NaN NaN 574688.6 NaN 22726 5740 28467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28471 111.1 NaN 1260000 35 0 368810 0.327 + 30283 VKKKKIVRIRV 11 77 456.331340945055 NaN 0 456.3167419433594 PEAK HCD FTMS 0 0 0 28470 25926.62890625 0.5223332873214488 -5 0.0316619873046875 1 Unmodified _VKKKKIVRIRV_ REV__ENSG00000088882|ENST00000380605|CPXM1 0.09484139111097674 0.34185110575506755 1 A 1 -1 3.0989 0 0 0.3403 0 0 232.24416143825505 604.3557222955686 836.5998837338236 0 0 0 0 0 0 0 0 0 A 0.3403 - 4 + NaN NaN 278390.2 NaN 22727 5742 28470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28472 111.1 NaN 1713000 35 0 359770 0.261 -1 0 117 436.7813244197639 871.5480959063278 2 436.7814025878906 MULTI HCD FTMS 0 0 0 28470 836527.75 0.7519237350808426 -6 0.037933349609375 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 8.6759 0 0 0.99546 0 0 706.4651471532013 0 706.4651471532013 0 7.416851019983319 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.99546 - 26 + NaN NaN 346017.6 NaN 22728 5742 28470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28477 111.12 NaN 2246600 35 0 655480 0.327 -1 0 81 417.2770200364997 832.5394871397995 2 417.27703857421875 MULTI HCD FTMS 0 0 0 28476 983127.4375 0.7109111897415001 3 -0.0258331298828125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 423178.8 NaN 22729 5746 28476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28478 111.13 NaN 1996800 35 0 439130 0.261 + 15903 LPLQKLLLPSL 11 109 412.27633776599134 NaN 0 412.29046630859375 PEAK HCD FTMS 0 0 0 28476 58654.328125 0.5165590180103226 22 -0.15412139892578125 2 Unmodified _LPLQKLLLPSL_ ENSG00000142197|ENST00000691173|DOP1B;nc|ENSG00000142197|Q9Y3R5-2|DOP1B 1.3296431237094175 0.3383483288439026 1 V 1 11 3.0989 0 0 0.37675 0 0 429.2346385673358 291.21174036197505 720.4463789293109 0 0 0 0 0 0 0 0 0 V 0.37675 - 4 + NaN NaN 387745.2 NaN 22730 5746 28476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28479 111.13 NaN 2169900 35 0 393970 0.261 -1 0 101 414.7679133816283 827.5212738300567 2 414.7681884765625 MULTI HCD FTMS 0 0 0 28476 520582.53125 0.37267376448121237 -11 0.0724029541015625 3 NaN NaN 1 S 1 -1 1.9897 0 0 0.24044 0 0 432.30283132093246 305.16599451236567 737.4688258332981 0 0 0 0 0 0 0 0 0 S 0.24044 - 53 + NaN NaN 414168.4 NaN 22731 5746 28476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28481 111.14 NaN 1285300 35 0 201270 0.326 -1 0 122 458.79432093958343 915.5740889459669 2 458.7946472167969 MULTI HCD FTMS 0 0 0 28480 240574.640625 0.4294469306135136 11 -0.07514190673828125 1 NaN NaN 1 Q 1 -1 3.4949 0 0 0.38171 0 0 347.26544744381687 437.21927887618415 784.4847263200011 0 0 0 0 0 0 0 0 0 Q 0.38171 - 24 + NaN NaN 283282.8 NaN 22732 5747 28480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28493 111.21 NaN 1379100 35 0 311090 0.327 -1 0 92 434.3038680054901 866.5931830777802 2 434.3035888671875 MULTI HCD FTMS 0 0 0 28492 651754.1875 0.3967620271806876 14 -0.09223175048828125 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.63289 0 0 144.16283395770216 648.3814568421894 792.5442907998915 0 0 0 0 0 0 0 0 0 A 0.63289 - 23 + NaN NaN 383371.3 NaN 22733 5758 28492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28495 111.22 NaN 1412600 35 0 236550 0.344 -1 0 133 436.7813244197639 871.5480959063278 2 436.7814025878906 MULTI HCD FTMS 0 0 0 28494 448177.8125 0.4028503952861833 11 -0.07347869873046875 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 9.3323 0 0 1.0708 0 0 706.4652692235138 0 706.4652692235138 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0708 - 23 + NaN NaN 415879.8 NaN 22734 5759 28494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28497 111.22 NaN 712260 35 0 166350 0.411 -1 0 82 456.33071939446086 455.32344292786087 1 456.317138671875 MULTI HCD FTMS 0 0 0 28496 67983.375 1 0 0 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 299443.1 NaN 22735 5760 28496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28505 111.27 NaN 1090900 35 0 291760 0.327 + 23618 RPLKRLIPKI 10 60 617.4275417436568 NaN 0 617.4122314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RPLKRLIPKI_ REV__ENSG00000107959|ENST00000224949|PITRM1;REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF;REV__nc|ENSG00000107959|Q5JRX3-2|PITRM1;REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1 0.4007161486938917 0.3398413315442166 1 D 1 -1 4.6041 0 0 0.37345 0 0 670.4728900684394 444.3117497467187 1114.784639815158 0 0 0 0 0 0 0 0 0 D 0.37345 - 13 + NaN NaN 261200.5 NaN 22736 5767 28504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28506 111.27 NaN 448770 35 0 31411 0.261 -1 0 65 639.5560757742452 NaN 0 639.916015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 A 1 -1 5.4846 0 0 0.42945 0 0 760.7168506094835 442.3174227350219 1203.0342733445054 0 0 0 0 0 0 0 0 0 A 0.42945 - 5 + NaN NaN 155580.4 NaN 22737 5767 28504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28517 111.33 NaN 552100 35 0 131740 0.411 -1 0 98 528.3746341933972 527.3673577267972 1 528.3742065429688 MULTI HCD FTMS 0 0 0 28516 509452.5 0.046150582874154876 68 -0.4348907470703125 1 NaN NaN 1 {M(Oxidation (M))|F}[RK] 3 -1 3.9524 0 0 0.74946 0 0 78.09854166410032 0 78.09854166410032 0 0.8534811358448753 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[RK] 0.74946 - 14 + NaN NaN 245707.5 NaN 22738 5777 28516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28520 111.35 NaN 957640 35 0 111080 0.327 -1 0 106 436.7813244197639 871.5480959063278 2 436.78125 MULTI HCD FTMS 0 0 0 28519 185447.5 0.1666918722796758 31 -0.1972808837890625 1 NaN NaN 1 D 1 -1 3.0989 0 0 0.35557 0 0 365.2789893270843 388.2239168756469 753.5029062027312 0 0 0 0 0 0 0 0 0 D 0.35557 - 22 + NaN NaN 278772.3 NaN 22739 5779 28519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28522 111.35 NaN 983650 35 0 141150 0.411 -1 0 109 434.3038680054901 866.5931830777802 2 434.3037414550781 MULTI HCD FTMS 0 0 0 28521 373803.46875 0.22755668451830668 36 -0.23023223876953125 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.63289 0 0 144.16334569080522 648.3814933264364 792.5448390172417 0 0 0 0 0 0 0 0 0 A 0.63289 - 17 + NaN NaN 387540.2 NaN 22740 5780 28521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28525 111.37 NaN 1962500 35 0 1489800 0.411 -1 0 80 625.576318299747 624.5690418331469 1 625.5771484375 MULTI HCD FTMS 0 0 0 28524 346353.09375 0.6305864825204299 -22 0.144378662109375 1 NaN NaN 1 M 1 -1 4.6041 0 0 0.73716 0 0 105.24349359271567 385.26035486392817 490.5038484566438 0 0 0 0 0 0 0 0 0 M 0.73716 - 10 + NaN NaN 679970.8 NaN 22741 5782 28524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28533 111.41 NaN 818580 35 0 163340 0.411 -1 0 62 579.366482360654 578.359205894054 1 579.3660888671875 MULTI HCD FTMS 0 0 0 28532 326276.40625 1 0 0 1 NaN NaN 1 N 1 -1 1.9897 0 0 0.34402 0 0 238.1303373411227 223.16990076236564 461.30023810348837 0 0 0 0 0 0 0 0 0 N 0.34402 - 5 + NaN NaN 322273.6 NaN 22742 5789 28532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28539 111.45 NaN 1921000 35 0 1421700 0.411 -1 0 86 625.576318299747 624.5690418331469 1 625.5755615234375 MULTI HCD FTMS 0 0 0 28538 355457 0.6471614758523128 -10 0.06301116943359375 1 NaN NaN 1 Q 1 -1 1.2591 0 0 0.20159 0 0 166.29528192279378 327.18610559635005 493.4813875191438 0 0 0 0 0 0 0 0 0 Q 0.20159 - 11 + NaN NaN 655943.2 NaN 22743 5794 28538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28541 111.45 NaN 1192700 35 0 284130 0.411 -1 0 131 401.326507088599 NaN 0 401.3266296386719 PEAK HCD FTMS 0 0 0 28540 288182.71875 0.9528413213902787 -2 0.01297760009765625 1 NaN NaN 1 Y 1 -1 1.9897 0 0 0.24851 0 0 255.34043985903548 379.22348962955317 634.5639294885887 0 0 0 0 0 0 0 0 0 Y 0.24851 - 1 + NaN NaN 445098.8 NaN 22744 5795 28540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28555 111.53 NaN 875100 35 0 389260 0.345 -1 0 84 440.32189775962894 439.31462129302895 1 440.3213195800781 MULTI HCD FTMS 0 0 0 28554 818077.5625 0.027444328603605267 64 -0.44191741943359375 1 NaN NaN 1 R 1 -1 0.71334 0 0 0.16238 0 0 137.1051924373633 143.08733545474846 280.1925278921118 0 0 0 0 0 0 0 0 0 R 0.16238 - 6 + NaN NaN 283048.9 NaN 22745 5808 28554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28559 111.55 NaN 762900 35 0 322310 0.411 -1 0 97 440.32189775962894 439.31462129302895 1 440.32257080078125 MULTI HCD FTMS 0 0 0 28558 821459.9375 0.027557798297942006 67 -0.47019195556640625 1 NaN NaN 1 E 1 -1 0.48455 0 0 0.1103 0 0 112.11257769126958 195.1392763727172 307.2518540639868 0 0 0 0 0 0 0 0 0 E 0.1103 - 7 + NaN NaN 316341.2 NaN 22746 5811 28558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28562 111.57 NaN 371110 35 0 29847 0.411 + 12107 KKKHKKKLKQ 10 99 647.4448028727842 NaN 0 647.4443359375 PEAK HCD FTMS 0 0 0 28561 112599.1796875 0.32383546410628195 -1 0.00665283203125 1 Unmodified _KKKHKKKLKQ_ REV__ENSG00000171804|ENST00000447313|WDR87;REV__nc|ENSG00000171804|Q6ZQQ6-2|WDR87;REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 1.6526216038709556 0.33876987398426067 1 A 1 -1 3.0989 0 0 0.23969 0 0 482.3945502014124 736.4336140510422 1218.8281642524546 0 0 0 0 0 0 0 0 0 A 0.23969 - 13 + NaN NaN 199315.3 NaN 22747 5813 28561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28568 111.6 NaN 2435400 35 0 1797700 0.401 -1 0 90 625.5759882161888 NaN 0 625.5762939453125 PEAK HCD FTMS 0 0 0 28567 334155.96875 0.48196538374131476 1 -0.006622314453125 1 NaN NaN 1 D 1 -1 3.9794 0 0 0.31857 0 0 174.49610704377625 956.5696180599489 1131.065725103725 0 0 0 0 0 0 0 0 0 D 0.31857 - 11 + NaN NaN 795950.9 NaN 22748 5818 28567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28570 111.6 NaN 873890 35 0 138860 0.411 + 22190 QLKRKILIKH 10 110 638.9317925958738 NaN 0 638.9315185546875 PEAK HCD FTMS 0 0 0 28569 515321.5 0.6667028380668139 -11 0.07045745849609375 1 Unmodified _QLKRKILIKH_ ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1 1.4819007175156935 0.33891598740166873 1 G 1 10 7.4743 0 0 0.58583 0 0 308.18494832157677 907.5973604791624 1215.7823088007392 0 0 0 0 0 0.5 0 0 0 G 0.58583 - 13 + NaN NaN 353718 NaN 22749 5819 28569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28578 111.65 NaN 676370 35 0 78452 0.411 + 25724 SKKLKRIFV 9 135 559.8740786159425 NaN 0 559.8739624023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SKKLKRIFV_ chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2 14.838274106304384 0.2220448417561729 1 T 1 9 7.7165 0 0 0.69037 0 0 475.2981317418474 538.3703090839142 1013.6684408257615 0 0 0 0 0 0.5242275032520141 0 0 0 T 0.69037 - 41 + NaN NaN 291537.5 NaN 22750 5826 28577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28580 111.66 NaN 2457800 35 0 1777100 0.411 -1 0 94 625.5759882161888 NaN 0 625.4320068359375 PEAK HCD FTMS 0 0 0 28579 212857.625 0.30701234306589015 8 -0.0518951416015625 1 NaN NaN 1 C 1 -1 3.4949 0 0 0.27978 0 0 755.8414773095275 387.27573572330317 1143.1172130328307 0 0 0 0 0 0 0 0 0 C 0.27978 - 24 + NaN NaN 829225.4 NaN 22751 5827 28579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28587 111.69 NaN 1009000 35 0 183440 0.411 + 14733 LHQLLLLLLI 10 112 594.9055770046532 NaN 0 594.90625 PEAK HCD FTMS 0 0 0 28586 602435.6875 0.6346644228928143 -3 0.0184173583984375 1 Unmodified _LHQLLLLLLI_ MYEOV|p.H301Q|1|0.69|ENSG00000172927|chr11:69296353-69296353|C/A|missense_variant 0.45834013312273997 0.33979201340002624 1 A 1 10 5.4846 0 0 0.46174 0 0 157.18259146312272 956.564498792863 1113.7470902559858 0 0 0 0 0 0 0 0 0 A 0.46174 - 21 + NaN NaN 389394.8 NaN 22752 5833 28586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28594 111.73 NaN 693270 35 0 91708 0.411 -1 0 114 603.4190067126405 1204.8234604920808 2 603.4188232421875 MULTI HCD FTMS 0 0 0 28593 583900.0625 0.420741011021302 -23 0.1467437744140625 1 NaN NaN 1 A 1 -1 6.5938 0 0 0.54728 0 0 482.3922890605124 648.3819187157424 1130.7742077762548 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.54728 - 40 + NaN NaN 299060.7 NaN 22753 5839 28593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28602 111.78 NaN 1340500 35 0 163390 0.344 -1 0 122 572.8926593169656 1143.770765700731 2 572.8932495117188 MULTI HCD FTMS 0 0 0 28601 717625.6875 0.28326419410797227 -14 0.0883331298828125 1 NaN NaN 1 A 1 -1 5.5989 0 0 0.48952 0 0 333.28554949154983 736.4338920994765 1069.7194415910262 0 0 0 0 0 0.25 0 0 0 A 0.48952 - 12 + NaN NaN 397628.2 NaN 22754 5846 28601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28604 111.78 NaN 710190 35 0 73658 0.327 + 25725 SKKLKRIFV 9 89 559.8745791428024 NaN 0 559.8746948242188 PEAK HCD FTMS 0 0 0 28603 193415.359375 0.2526894501876975 1 -0.00870513916015625 1 Unmodified _SKKLKRIFV_ chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2 10.073929032068715 0.24642998803896465 1 G 1 9 4.3361 0 0 0.38793 0 0 541.3787226393173 516.3018753524452 1057.6805979917626 0 0 0 0 0 0.4247425010840047 0 0 0 G 0.38793 - 11 + NaN NaN 202507.5 NaN 22755 5847 28603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28605 111.79 NaN 951540 35 0 84398 0.261 + 15847 LPKKVHPKK 9 103 537.8611586591888 NaN 0 537.8613891601562 PEAK HCD FTMS 0 0 0 28603 247208.140625 0.3678715150223206 3 -0.02144622802734375 2 Unmodified _LPKKVHPKK_ REV__ENSG00000152284|ENST00000282111|TCF7L1 2.0597508629832335 0.2852655770354268 1 S 1 -1 4.732 0 0 0.44071 0 0 555.3991228830276 428.2496431940063 983.648766077034 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.44071 - 13 + NaN NaN 248711.4 NaN 22756 5847 28603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28607 111.79 NaN 1145500 35 0 154170 0.327 -1 0 107 581.4060309617289 1160.7975089902577 2 581.4066162109375 MULTI HCD FTMS 0 0 0 28606 171821.859375 0.08045248972991677 -13 0.08361053466796875 1 NaN NaN 1 A 1 -1 3.0989 0 0 0.26697 0 0 438.3671511036751 648.381024471539 1086.7481755752142 0 0 0 0 0 0 0 0 0 A 0.26697 - 11 + NaN NaN 329237.2 NaN 22757 5848 28606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28611 111.81 NaN 620180 35 0 86698 0.327 + 25726 SKKLKRIFV 9 96 559.8745791428024 NaN 0 559.39306640625 PEAK HCD FTMS 0 0 0 28610 104898.9296875 0.13704626640648515 5 -0.0353546142578125 1 Unmodified _SKKLKRIFV_ chr5:180529414-180549931|120|11.18|0.62|4.17|+|1|None,CNOT6|2 10.073929032068715 0.24642998803896465 1 A 1 9 3.0989 0 0 0.27725 0 0 395.30340525650473 648.3815707043607 1043.6849759608654 0 0 0 0 0 0 0 0 0 A 0.27725 - 6 + NaN NaN 193978.6 NaN 22758 5851 28610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28612 111.81 NaN 2453300 35 0 1327300 0.261 -1 0 99 551.5206110973371 NaN 0 551.3609008789062 PEAK HCD FTMS 0 0 0 28610 156295.890625 0.2372581175851331 7 -0.05170440673828125 2 NaN NaN 1 N 1 -1 4.6041 0 0 0.41816 0 0 788.8290507085429 195.13910852603752 983.9681592345804 0 0 0 0 0 0 0 0 0 N 0.41816 - 36 + NaN NaN 467709.5 NaN 22759 5851 28610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28614 111.82 NaN 759550 35 0 70519 0.411 + 12235 KLERQKKK 8 144 529.3480068100653 NaN 0 529.3477172851562 PEAK HCD FTMS 0 0 0 28613 187061.140625 0.23850655798189951 -10 0.06711578369140625 1 Unmodified _KLERQKKK_ ENSG00000147202|ENST00000324765|DIAPH2;nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2 4.75600775471527 0.38822285293237185 1 S 1 8 7.2185 0 0 0.68313 0 0 458.27239814540195 508.35773645572505 966.630134601127 0 0 0 0 0 0.5 0 0 0 S 0.68313 - 22 + NaN NaN 310043.2 NaN 22760 5852 28613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28616 111.83 NaN 1540600 35 0 144050 0.327 -1 0 106 594.9059157254239 1187.7972785176478 2 594.9056396484375 MULTI HCD FTMS 0 0 0 28615 606563.4375 0.4043753554164297 -2 0.01592254638671875 1 NaN NaN 1 A 1 -1 7.232 0 0 0.60886 0 0 157.18326276219278 956.5664439543473 1113.74970671654 0 0 0 0 0 0.1747425010840047 0 0 0 A 0.60886 - 17 + NaN NaN 331952.1 NaN 22761 5853 28615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28619 111.84 NaN 2202200 35 0 863560 0.401 + 12564 KTAKKVKKAV 10 109 550.8794373017992 1099.7443216703982 2 550.8790893554688 MULTI HCD FTMS 0 0 0 28618 886939.75 0.27346229636832353 -17 0.11284637451171875 1 Unmodified _KTAKKVKKAV_ tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1 1.3295316138638542 0.46826628246186464 1 RRQ 3 10 8.9744 0 0 0.81604 0 0 0 656.4583163815888 656.4583163815888 -0.005040348664769212 0 -0.005040348664769212 0 0 0.2742275032520141 0 0 0 RRQ 0.81604 - 33 NaN NaN 741438.8 NaN 22762 5855 28618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28621 111.85 NaN 2237000 35 0 1561100 0.411 + 14720 LHKKKKRLAK 10 98 625.4325045311077 1248.8504561290154 2 625.4315795898438 MULTI HCD FTMS 0 0 0 28620 532932.9375 0.7365303070520681 -2 0.01280975341796875 1 Unmodified _LHKKKKRLAK_ ENSG00000152953|ENST00000282908|STK32B;ENSG00000165752|ENST00000298630|STK32C;ENSG00000169302|ENST00000397936|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;nc|ENSG00000165752|Q86UX6-2|STK32C;nc|ENSG00000169302|Q8WU08-3|STK32A 0.45834013312273997 0.47287763746706196 1 A 1 9 7.3464 0 0 0.58825 0 0 624.3897150174904 550.3967521415595 1174.78646715905 0 0 0 0 0 0.4247425010840047 0 0 0 + A 0.58825 + + 84 + NaN NaN 760398.7 NaN 22763 5856 28620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28623 111.85 NaN 1049000 35 0 115810 0.326 -1 0 90 583.8837841340971 1165.7530153349942 2 583.8836669921875 MULTI HCD FTMS 0 0 0 28622 428404.53125 0.5189597671126052 -13 0.0887298583984375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1576 0 0 1000.6705396043286 0 1000.6705396043286 0 6.0475750727131565 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1576 - 27 + NaN NaN 250196.8 NaN 22764 5857 28622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28624 111.86 NaN 1127300 35 0 187060 0.261 -1 0 111 603.4190067126405 1204.8234604920808 2 603.4181518554688 MULTI HCD FTMS 0 0 0 28622 1075437.625 0.7749283527998387 -6 0.04257965087890625 2 NaN NaN 1 A 1 -1 5.4846 0 0 0.45522 0 0 174.2101051421128 956.5651598176626 1130.7752649597753 0 0 0 0 0 0 0 0 0 A 0.45522 - 57 + NaN NaN 254095.9 NaN 22765 5857 28622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28627 111.87 NaN 728380 35 0 41883 0.411 + 14870 LKKTKTKTK 9 132 538.362955533742 NaN 0 538.3629760742188 PEAK HCD FTMS 0 0 0 28626 256903.296875 0.4513841691860683 1 -0.0068359375 1 Unmodified _LKKTKTKTK_ ENST00000448942.5_1_6:138178656-138178794:-|nuORF 0.45834013312273997 0.29302578994899664 1 A 1 9 5.4846 0 0 0.51033 0 0 396.30835715017673 604.3557301620714 1000.6640873122481 0 0 0 0 0 0 0 0 0 A 0.51033 - 54 + NaN NaN 302305 NaN 22766 5859 28626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28629 111.88 NaN 1335700 35 0 81107 0.411 + 30974 VRVLIFRK 8 149 515.84792313066 1029.6812933281199 2 515.84814453125 MULTI HCD FTMS 0 0 0 28628 360660.3125 0.403316925463147 -1 0.0068359375 1 Unmodified _VRVLIFRK_ REV__tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1 2.302733041254933 0.5385759549224092 1 E 1 -1 9.8708 0 0 0.95862 0 0 220.12948885705129 677.5031841885648 897.632673045616 0 0 0 0 0 0.5 0 0.23965182871044374 0 E 0.95862 - 65 + NaN NaN 482622.9 NaN 22767 5860 28628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28631 111.88 NaN 1021000 35 0 204930 0.327 -1 0 89 481.33728208178985 480.33000561518986 1 484.34625244140625 MULTI HCD FTMS 0 0 0 28630 704577.0625 0.30583498740711873 28 -0.24825286865234375 1 NaN NaN 1 D 1 -1 3.4949 0 0 0.72759 0 0 66.57565488452424 295.6999605768188 362.275615461343 0 0 0 0 0 0 0 0 0 D 0.72759 - 3 + NaN NaN 232353.6 NaN 22768 5861 28630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28632 111.89 NaN 998040 35 0 38086 0.261 -1 0 113 507.3345922061501 1012.6546314791002 2 507.8359680175781 MULTI HCD FTMS 0 0 0 28630 359608.1875 0.5968410549581046 1 -0.00914764404296875 2 NaN NaN 1 QRR 3 -1 9.437 0 0 0.9319 0 0 554.3809681623062 0 554.3809681623062 0 0.45757490560674974 0 0 0 0.3494850021680094 0 0 0 QRR 0.9319 - 35 NaN NaN 244593.4 NaN 22769 5861 28630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28634 111.89 NaN 1625900 35 0 203710 0.327 + 30314 VKTAKLKIR 9 114 528.8663157143766 1055.718078495553 2 528.8661499023438 MULTI HCD FTMS 0 0 0 28633 678190.5 0.18136797683153436 -14 0.1004791259765625 1 Unmodified _VKTAKLKIR_ ENST00000522207.1_1_8:86351138-86354561:+|nuORF 2.0597508629832335 0.3354026079994024 1 A 1 8 4.6089 0 0 0.43657 0 0 157.1832734830311 824.4867373423295 981.6700108253606 0 0 0 0 0 0.21346799108044048 0 0 0 + A 0.43657 + + 12 + NaN NaN 331652.4 NaN 22770 5862 28633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28635 111.9 NaN 446960 35 0 66413 0.261 + 21416 PVRIVVPLKE 10 77 575.3705444335938 NaN 0 575.3705444335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PVRIVVPLKE_ REV__ENSG00000138600|ENST00000261854|SPPL2A;REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant 1.1933415558491238 0.33916295405077446 1 N 1 -1 3.9794 0 0 0.34642 0 0 736.5302933576187 295.13157068424067 1031.6618640418594 0 0 0 0 0 0 0 0 0 N 0.34642 - 7 + NaN NaN 162340.8 NaN 22771 5862 28633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28637 111.9 NaN 2487700 35 0 350580 0.327 -1 0 121 572.8926593169656 1143.770765700731 2 572.8926391601562 MULTI HCD FTMS 0 0 0 28636 2049968 0.8091718894428952 3 -0.0189361572265625 1 NaN NaN 1 A 1 -1 5.9862 0 0 0.52337 0 0 421.34139772299494 648.3818645669622 1069.7232622899571 0 0 0 0 0 0.28872548999643577 0 0 0 A 0.52337 - 32 + NaN NaN 414347.3 NaN 22772 5863 28636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28640 111.91 NaN 1892800 35 0 293850 0.327 -1 0 117 581.4060309617289 1160.7975089902577 2 581.4063110351562 MULTI HCD FTMS 0 0 0 28639 1500585 0.7026218883936295 4 -0.037445068359375 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.47248 0 0 174.20968790362662 912.5377792643719 1086.7474671679986 0 0 0 0 0 0 0 0 0 A 0.47248 - 41 + NaN NaN 481467.4 NaN 22773 5865 28639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28642 111.92 NaN 1777800 35 0 196510 0.327 + 30245 VKAKTLRKL 9 118 528.8663157143766 1055.718078495553 2 528.8667602539062 MULTI HCD FTMS 0 0 0 28641 993988.3125 0.2658215490077138 -10 0.07424163818359375 1 Unmodified _VKAKTLRKL_ ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 0.6014990680409731 0.3464572424761564 1 A 1 8 7.034 0 0 0.66628 0 0 201.21030367729355 780.4596853240677 981.6699890013613 0 0 0 0 0 0.3054621874040891 0 0 0 + A 0.66628 + + 49 + NaN NaN 344603.3 NaN 22774 5866 28641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28643 111.92 NaN 1198400 35 0 87154 0.261 -1 0 121 493.8351918529186 985.6558307726373 2 493.83587646484375 MULTI HCD FTMS 0 0 0 28641 433401.875 0.5023545958719503 -6 0.04439544677734375 2 NaN NaN 1 K 1 -1 10.485 0 0 1.0637 0 0 637.4280759208444 217.10820947818596 854.5362853990304 0 0 0 0 0 0.3494850021680094 0 0 0 K 1.0637 - 52 + NaN NaN 265656 NaN 22775 5866 28641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28645 111.93 NaN 3012400 35 0 586850 0.327 + 28772 TTKKKKKKK 9 116 559.3928114221902 1116.7710699111803 2 559.3931274414062 MULTI HCD FTMS 0 0 0 28644 2944759 1 0 0 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 1 A 1 9 4.615 0 0 0.41325 0 0 438.36756776573094 604.3546705599549 1042.7222383256858 0 0 0 0 0 0.23965182871044374 0 0 0 A 0.41325 - 32 + NaN NaN 492384.1 NaN 22776 5867 28644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28646 111.93 NaN 868980 35 0 155430 0.261 -1 0 102 603.4190067126405 1204.8234604920808 2 603.4197998046875 MULTI HCD FTMS 0 0 0 28644 646067.8125 0.46553724186246515 4 -0.0404815673828125 2 NaN NaN 1 A 1 -1 5.7969 0 0 0.48114 0 0 482.3921383258683 648.381630883345 1130.7737692092132 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.48114 - 41 + NaN NaN 225131.8 NaN 22777 5867 28644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28647 111.94 NaN 1196300 35 0 118300 0.263 + 14849 LKEQLLLL 8 105 485.32155082877404 968.6285487243481 2 485.3222351074219 MULTI HCD FTMS 0 0 0 28644 403851.1875 0.6000608454113301 -4 0.02767181396484375 3 Unmodified _LKEQLLLL_ CPXCR1|p.E88Q|1|0.76|ENSG00000147183|chrX:88753676-88753676|G/C|missense_variant 4.75600775471527 0.5349361699807423 1 M 1 8 8.2268 0 0 0.84933 0 0 370.2195488234268 464.33112512760005 834.5506739510269 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.84933 - 22 + NaN NaN 280184.2 NaN 22778 5867 28644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28648 111.94 NaN 1310600 35 0 222340 0.261 -1 0 91 539.8576570508346 1077.7007611684692 2 539.8572998046875 MULTI HCD FTMS 0 0 0 28644 409062.84375 0.2431354867182012 -11 0.082977294921875 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2522 0 0 912.6177971565536 0 912.6177971565536 0 7.213403050078781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2522 - 19 + NaN NaN 270806.7 NaN 22779 5867 28644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28651 111.95 NaN 1126500 35 0 111260 0.327 -1 0 100 594.9059157254239 1187.7972785176478 2 594.9058837890625 MULTI HCD FTMS 0 0 0 28650 823342.9375 0.5488949257367162 14 -0.112396240234375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46174 0 0 686.7006121131541 351.03889504679177 1037.7395071599458 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46174 - 15 + NaN NaN 252856 NaN 22780 5869 28650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28652 111.96 NaN 1252200 35 0 95222 0.262 -1 0 121 493.8351918529186 985.6558307726373 2 493.83502197265625 MULTI HCD FTMS 0 0 0 28650 304479.03125 0.3529205790701221 -3 0.03133392333984375 2 NaN NaN 1 A[KS]K 4 -1 12.521 0 0 1.2703 0 0 351.27682764083573 217.10811792545158 568.3849455662873 0 0 0 0 0 0.3252574989159953 0 0.6203715150305281 0.28872548999643577 A[KS]K 1.2703 - 75 + NaN NaN 275924.3 NaN 22781 5869 28650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28654 111.96 NaN 3950700 35 0 667520 0.327 + 12565 KTAKKVKKAV 10 110 550.8794373017992 1099.7443216703982 2 550.87890625 MULTI HCD FTMS 0 0 0 28653 2015205 0.6213303518676747 -2 0.01558685302734375 1 Unmodified _KTAKKVKKAV_ tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1 1.3295316138638542 0.46826628246186464 1 W 1 10 8.9794 0 0 0.8165 0 0 605.4857289963733 305.16074053323126 910.6464695296045 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.8165 - 40 + NaN NaN 494390.9 NaN 22782 5870 28653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28655 111.96 NaN 814880 35 0 115150 0.261 + 21411 PVPRWLLLL 9 88 553.8586247992916 NaN 0 553.8587036132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PVPRWLLLL_ ENSG00000121064|ENST00000262288|SCPEP1;ENST00000571345.5_1_17:55055520-55072276:+|nuORF;ENST00000571898.5_1_17:55055520-55072831:+|nuORF;ENST00000573823.5_1_17:55055520-55064652:+|nuORF;nc|ENSG00000121064|Q9HB40-2|SCPEP1 0.5247636613948944 0.2927039108006614 1 V 1 8 3.0989 0 0 0.28027 0 0 797.5192993038582 206.08602319888908 1003.6053225027473 0 0 0 0 0 0 0 0 0 + V 0.28027 + + 9 + NaN NaN 212496.6 NaN 22783 5870 28653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28657 111.97 NaN 1658600 35 0 191620 0.352 + 26435 STIIQLLLL 9 131 507.3345922061501 1012.6546314791002 2 507.33331298828125 MULTI HCD FTMS 0 0 0 28656 532433.375 0.6799606563207657 10 -0.0786895751953125 1 Unmodified _STIIQLLLL_ REV__ENSG00000144893|ENST00000687756|MED12L;REV__nc|ENSG00000144893|Q86YW9-4|MED12L;REV__nc|ENSG00000144893|Q86YW9|MED12L 7.910154910731844 0.2910521888787154 1 AT 2 -1 7.0783 0 0 0.69899 0 0 158.14596168354575 679.4072673791474 837.5532290626932 0 0 0 0 0 0 0 0 0 AT 0.69899 - 50 + NaN NaN 491036.9 NaN 22784 5871 28656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28659 111.98 NaN 2087400 35 0 280280 0.327 + 12250 KLKKTKKR 8 116 515.366563747862 1028.7185745625238 2 515.3672485351562 MULTI HCD FTMS 0 0 0 28658 528881.25 0.09353805788900517 -21 0.16562652587890625 1 Unmodified _KLKKTKKR_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 2.0597508629832335 0.5389364538378849 1 H 1 8 3.4949 0 0 0.33973 0 0 193.1317543252664 695.5146262344257 888.646380559692 0 0 0 0 0 0 0 0 0 H 0.33973 - 14 + NaN NaN 396098.8 NaN 22785 5872 28658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28660 111.98 NaN 1962300 35 0 276100 0.254 + 28286 TLRLKLRL 8 104 506.8530509105986 1011.6915488879972 2 506.8526306152344 MULTI HCD FTMS 0 0 0 28658 892470.375 0.17478701715319783 -18 0.1430816650390625 2 Unmodified _TLRLKLRL_ REV__ENSG00000213983|ENST00000397120|AP1G2;REV__ENST00000460049.6_1_14:24028960-24033376:-|nuORF;REV__ENST00000535852.6_1_14:24028960-24035624:-|nuORF;REV__ENST00000554892.1_1_14:24028960-24029314:-|nuORF;REV__ENST00000557391.1_1_14:24028960-24029655:-|nuORF 2.302733041254933 0.5385759549224092 1 AC 2 -1 8.0493 0 0 0.79563 0 0 157.18310600346757 677.4499171451444 834.633023148612 0 0 0 0 0 0.15956804099560176 0 0 0 AC 0.79563 - 22 + NaN NaN 373181.1 NaN 22786 5872 28658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28661 111.98 NaN 1303400 35 0 384310 0.261 -1 0 90 449.3272727067819 896.6399924803638 2 449.3272399902344 MULTI HCD FTMS 0 0 0 28658 293813.8125 0.04017702116435 -47 0.332977294921875 3 NaN NaN 1 A 1 -1 6.9897 0 0 0.77954 0 0 174.2102724622078 648.3819674127561 822.592239874964 0 0 0 0 0 0 0 0 0 A 0.77954 - 19 + NaN NaN 284766.3 NaN 22787 5872 28658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28663 111.99 NaN 996960 35 0 94205 0.326 -1 0 98 583.8837841340971 1165.7530153349942 2 583.8832397460938 MULTI HCD FTMS 0 0 0 28662 368822.84375 0.4467838296197031 3 -0.02236175537109375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.0481 0 0 1000.6709668504224 0 1000.6709668504224 0 6.532125137753435 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0481 - 30 + NaN NaN 236162.5 NaN 22788 5873 28662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28664 111.99 NaN 1407300 35 0 111280 0.263 + 12431 KPTKAARQ 8 113 450.27489967900425 NaN 0 450.27484130859375 PEAK HCD FTMS 0 0 0 28662 374153.46875 0.6056632489327338 -5 0.0434722900390625 2 Unmodified _KPTKAARQ_ ENSG00000183921|ENST00000602312|SDR42E2 7.289230182591677 0.38822285293237185 1 P 1 7 9.6041 0 0 1.0689 0 0 678.404201968557 120.05062280826405 798.454824776821 0 0 0 0 0 0.5 0 0 0 + P 1.0689 + + 15 + NaN NaN 296209 NaN 22789 5873 28662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28666 112 NaN 5432600 35 0 1167200 0.327 -1 0 117 537.379838681644 1072.7451244300878 2 537.3799438476562 MULTI HCD FTMS 0 0 0 28665 3649684.25 0.8449570510531333 -2 0.021270751953125 1 NaN NaN 1 A 1 -1 3.4556 0 0 0.32213 0 0 166.13234474434404 832.5645955566522 998.6969403009962 0 0 0 0 0 0.1861818737241735 0 0 0 A 0.32213 - 28 + NaN NaN 534841.6 NaN 22790 5874 28665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28669 112.01 NaN 1538300 35 0 97452 0.327 + 12542 KSKLLIQL 8 126 471.8217031779112 NaN 0 471.8216247558594 PEAK HCD FTMS 0 0 0 28668 356017 0.4188245283283839 -20 0.16457366943359375 1 Unmodified _KSKLLIQL_ REV__ENSG00000055130|ENST00000325222|CUL1;REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF 4.75600775471527 0.38822285293237185 1 H 1 -1 7.034 0 0 0.74701 0 0 351.277295883112 450.27815351824523 801.5554494013572 0 0 0 0 0 0.3054621874040891 0 0 0 H 0.74701 - 30 + NaN NaN 358406.2 NaN 22791 5876 28668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28672 112.02 NaN 612210 35 0 137520 0.411 -1 0 110 509.3309616189649 1016.6473703047299 2 509.3307189941406 MULTI HCD FTMS 0 0 0 28671 249507.09375 0.345662940938256 -12 0.10282135009765625 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.375 0 0 851.5644520691815 0 851.5644520691815 0 1.1877186907143766 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.375 - 38 + NaN NaN 268920.7 NaN 22792 5878 28671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28674 112.03 NaN 1992500 35 0 609020 0.327 + 28168 TKKKKKILAS 10 106 572.8926593169656 1143.770765700731 2 572.8922729492188 MULTI HCD FTMS 0 0 0 28673 479543.53125 0.18928741582877417 19 -0.16884613037109375 1 Unmodified _TKKKKKILAS_ REV__ENSG00000097007|ENST00000318560|ABL1;REV__nc|ENSG00000097007|P00519-2|ABL1 0 0.4753037046562868 1 A 1 -1 6.5938 0 0 0.5765 0 0 201.20909326776 868.511916363711 1069.721009631471 0 0 0 0 0 0.5 0 0 0 A 0.5765 + + 29 + NaN NaN 385963.2 NaN 22793 5879 28673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28675 112.03 NaN 730270 35 0 128490 0.261 -1 0 92 603.4190067126405 1204.8234604920808 2 603.4178466796875 MULTI HCD FTMS 0 0 0 28673 546289.3125 0.3936398236836668 16 -0.14703369140625 2 NaN NaN 1 A 1 -1 5.4846 0 0 0.45522 0 0 174.20991697150572 956.565679975145 1130.7755969466507 0 0 0 0 0 0 0 0 0 A 0.45522 - 33 + NaN NaN 198685.2 NaN 22794 5879 28673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28677 112.04 NaN 5088700 35 0 955630 0.327 + 30246 VKAKTLRKL 9 121 528.8663157143766 1055.718078495553 2 528.8662719726562 MULTI HCD FTMS 0 0 0 28676 3394902.75 0.9078962965528303 4 -0.03989410400390625 1 Unmodified _VKAKTLRKL_ ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 0.6014990680409731 0.3464572424761564 1 AD 2 8 8.8109 0 0 0.83459 0 0 377.3138766447668 489.34339843095535 866.6572750757222 0 0 0 0 0 0.2742275032520141 0 0.5010912013506126 0 AD 0.83459 - 35 + NaN NaN 758004.7 NaN 22795 5880 28676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28678 112.04 NaN 1480200 35 0 254610 0.261 -1 0 109 581.4060309617289 1160.7975089902577 2 581.4060668945312 MULTI HCD FTMS 0 0 0 28676 930624.1875 0.4357480076143885 19 -0.16641998291015625 2 NaN NaN 1 N 1 -1 5.7133 0 0 0.49219 0 0 598.425940242014 445.3176363580688 1043.7435766000829 0 0 0 0 0 0 0 0 0.3494850021680094 N 0.49219 - 23 + NaN NaN 309545.3 NaN 22796 5880 28676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28680 112.05 NaN 2841600 35 0 526930 0.327 + 28773 TTKKKKKKK 9 123 559.3928114221902 1116.7710699111803 2 559.39306640625 MULTI HCD FTMS 0 0 0 28679 1950468.75 0.6623525898044628 14 -0.128753662109375 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 1 A 1 9 5.4846 0 0 0.49111 0 0 174.20932758269527 868.5134087019542 1042.7227362846495 0 0 0 0 0 0 0 0 0 A 0.49111 - 52 + NaN NaN 516437.6 NaN 22797 5881 28679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28681 112.05 NaN 1691000 35 0 296060 0.261 -1 0 111 493.35362079082364 984.6926886484473 2 493.353759765625 MULTI HCD FTMS 0 0 0 28679 507992.375 0.07657083737798223 -16 0.1340179443359375 2 NaN NaN 1 K 1 -1 6.9897 0 0 0.70984 0 0 636.4651933865317 217.10816370181877 853.5733570883505 0 0 0 0 0 0 0 0 0 K 0.70984 - 21 + NaN NaN 343363.8 NaN 22798 5881 28679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28683 112.06 NaN 1284400 35 0 68920 0.327 + 12543 KSKLLIQL 8 130 471.8217031779112 NaN 0 471.8211669921875 PEAK HCD FTMS 0 0 0 28682 364507.9375 0.428813413391466 -14 0.1125640869140625 1 Unmodified _KSKLLIQL_ REV__ENSG00000055130|ENST00000325222|CUL1;REV__ENST00000570242.1_1_16:31283248-31284932:+|nuORF 4.75600775471527 0.38822285293237185 1 P 1 -1 5.9862 0 0 0.63573 0 0 721.4977631900038 120.05063806705311 841.5484012570569 0 0 0 0 0 0.28872548999643577 0 0 0 P 0.63573 - 21 + NaN NaN 349153.5 NaN 22799 5882 28682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28685 112.06 NaN 2282300 35 0 390200 0.327 -1 0 114 539.8576570508346 1077.7007611684692 2 539.8573608398438 MULTI HCD FTMS 0 0 0 28684 1488804 0.8849033606905413 5 -0.05216217041015625 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2972 0 0 912.6179802620223 0 912.6179802620223 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2972 - 35 + NaN NaN 433014.7 NaN 22800 5883 28684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28686 112.07 NaN 649160 35 0 109470 0.261 -1 0 100 603.4190067126405 1204.8234604920808 2 603.41943359375 MULTI HCD FTMS 0 0 0 28684 535096.5 0.38557461603964144 20 -0.18209075927734375 2 NaN NaN 1 D 1 -1 5.2423 0 0 0.43511 0 0 262.2635928541095 824.4864935074038 1086.7500863615132 0 0 0 0 0 0.3252574989159953 0 0 0 D 0.43511 - 67 + NaN NaN 177073 NaN 22801 5883 28684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28687 112.07 NaN 1294800 35 0 288130 0.262 -1 0 94 495.83139602529195 989.6482391173839 2 495.8313293457031 MULTI HCD FTMS 0 0 0 28684 491931 0.15608803743401917 -12 0.094512939453125 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.3236 0 0 824.5653361406246 0 824.5653361406246 0 10.334733948153065 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3236 - 35 + NaN NaN 279783.2 NaN 22802 5883 28684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28689 112.08 NaN 1780200 35 0 204940 0.327 + 28443 TPKLLLIQ 8 127 463.3091535322127 NaN 0 463.3089294433594 PEAK HCD FTMS 0 0 0 28688 1019211.75 0.8359427879543444 19 -0.16715240478515625 1 Unmodified _TPKLLLIQ_ REV__ENST00000344851.4_1_6:158659294-158663164:-|nuORF 4.75600775471527 0.38822285293237185 1 VR 2 -1 4.9485 0 0 0.5352 0 0 361.2526321603254 305.15925012760005 666.4118822879254 0 0 0 0 0 0 0 0 0.3494850021680094 VR 0.5352 - 17 + NaN NaN 361768.2 NaN 22803 5884 28688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28691 112.08 NaN 3971700 35 0 873350 0.327 + 12624 KVRLVVVR 8 112 484.8401902938896 967.6658276545792 2 484.8398132324219 MULTI HCD FTMS 0 0 0 28690 1401462.125 0.2646904077305664 -14 0.11568450927734375 1 Unmodified _KVRLVVVR_ REV__ENSG00000061794|ENST00000081029|MRPS35;REV__MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant 0.7936320650641473 0.540814922690045 1 A 1 -1 6.9897 0 0 0.72233 0 0 201.21025244440676 692.4075511833199 893.6178036277267 0 0 0 0 0 0.5 0 0 0 A 0.72233 - 18 + NaN NaN 541595.1 NaN 22804 5885 28690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28692 112.09 NaN 2463500 35 0 398190 0.261 + 3596 EKKALKKKK 9 114 550.8794373017992 1099.7443216703982 2 550.8792114257812 MULTI HCD FTMS 0 0 0 28690 1228247.25 0.37869462214663213 13 -0.1135711669921875 2 Unmodified _EKKALKKKK_ ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-4|SART3 0.6014990680409731 0.3464572424761564 1 W 1 9 8.0989 0 0 0.73644 0 0 605.4857289963733 305.1602877252563 910.6460167216296 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.73644 - 53 + NaN NaN 468316.1 NaN 22805 5885 28690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28693 112.09 NaN 704860 35 0 73928 0.261 + 30299 VKLLKLFLSK 10 87 594.9057099010411 NaN 0 594.906005859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VKLLKLFLSK_ ENSG00000135828|ENST00000367559|RNASEL;nc|ENSG00000135828|Q05823-2|RNASEL 0.35063188157827746 0.339884196735365 1 {M(Oxidation (M))|F} 1 9 5.4846 0 0 0.46174 0 0 686.700108911654 351.03962122135005 1037.739730133004 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.46174 + + 10 + NaN NaN 213679.8 NaN 22806 5885 28690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28694 112.1 NaN 438770 35 0 87655 0.261 -1 0 80 574.4428124586954 NaN 0 574.8790893554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 1 {I|L} 1 -1 0.9691 0 0 0.084499 0 0 618.5436316539157 412.2259615533813 1030.769593207297 0 0 0 0 0 0 0 0 0 {I|L} 0.084499 - 12 + NaN NaN 156596.2 NaN 22807 5885 28690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28696 112.1 NaN 7408700 35 0 1659400 0.327 + 12251 KLKKTKKR 8 106 515.366563747862 1028.7185745625238 2 515.3663940429688 MULTI HCD FTMS 0 0 0 28695 4580773.5 0.8101566406814779 -7 0.070648193359375 1 Unmodified _KLKKTKKR_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 0.6903765706972694 0.5409681170271811 1 A 1 8 3.9794 0 0 0.38683 0 0 174.20971762371533 780.4600480686884 954.6697656924036 0 0 0 0 0 0 0 0 0 A 0.38683 - 15 + NaN NaN 544605.9 NaN 22808 5886 28695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28698 112.11 NaN 5817200 35 0 1240300 0.327 + 28637 TRLRIIKL 8 100 506.8530509105986 1011.6915488879972 2 506.852783203125 MULTI HCD FTMS 0 0 0 28697 3957837 0.7751277162657203 -3 0.02846527099609375 1 Unmodified _TRLRIIKL_ nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG853|Q9UQG0|ERVK-11 0.6903765706972694 0.5409681170271811 1 A 1 8 5.8412 0 0 0.57737 0 0 157.18300834087512 780.4603145683749 937.64332290925 0 0 0 0 0 0.1861818737241735 0 0 0 A 0.57737 - 19 + NaN NaN 471525.9 NaN 22809 5887 28697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28699 112.11 NaN 1979400 35 0 330970 0.261 + 23989 RVTALLLL 8 121 449.80897813105037 NaN 0 449.80853271484375 PEAK HCD FTMS 0 0 0 28697 364791.375 0.5312788149202143 -16 0.13791656494140625 2 Unmodified _RVTALLLL_ REV__nc|ENSG00000266200|P54317|PNLIPRP2 7.910154910731844 0.38822285293237185 1 P 1 -1 7.0006 0 0 0.77992 0 0 677.472297837493 120.05043207340077 797.5227299108938 0 0 0 0 0 0.23965182871044374 0 0 0 P 0.77992 - 26 + NaN NaN 382488.3 NaN 22810 5887 28697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28701 112.12 NaN 4694900 35 0 1001300 0.326 -1 0 109 537.379838681644 1072.7451244300878 2 537.379638671875 MULTI HCD FTMS 0 0 0 28700 3335299 0.7721721152783187 12 -0.1013946533203125 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.51126 0 0 174.21007240640728 824.4850245770231 998.6950969834304 0 0 0 0 0 0 0 0 0 A 0.51126 - 12 + NaN NaN 470005.8 NaN 22811 5888 28700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28702 112.12 NaN 2829900 35 0 891250 0.224 + 30380 VLKRKPVLS 9 86 520.3531201880429 1038.6916874428857 2 520.3528442382812 MULTI HCD FTMS 0 0 0 28700 2378159 0.7390197797321372 11 -0.08930206298828125 2 Unmodified _VLKRKPVLS_ ENST00000262376.10_1_16:4930962-4931145:+|nuORF 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 9 10.379 0 0 0.9992 0 0 873.6110885432748 0 873.6110885432748 0 4.409503439610027 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.9992 - 32 + NaN NaN 411388.7 NaN 22812 5888 28700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28703 112.12 NaN 1841900 35 0 363470 0.261 + 23965 RVLVVIVT 8 99 449.80897813105037 NaN 0 449.8087463378906 PEAK HCD FTMS 0 0 0 28700 273682.21875 0.3985882748522628 -15 0.12792205810546875 3 Unmodified _RVLVVIVT_ ENSG00000111371|ENST00000398637|SLC38A1 2.302733041254933 0.38822285293237185 1 P 1 8 7.0006 0 0 0.77992 0 0 677.4723283550711 120.0504397027953 797.5227680578664 0 0 0 0 0 0.23965182871044374 0 0 0 P 0.77992 - 28 + NaN NaN 361906.7 NaN 22813 5888 28700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28704 112.13 NaN 915600 35 0 193600 0.261 + -1 MLILIELL 8 91 487.3033814125027 NaN 0 487.3174743652344 PEAK HCD FTMS 0 0 0 28700 52389.03125 0.28292501896068767 -1 0.008758544921875 4 Oxidation (M) _M(Oxidation (M))LILIELL_ REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF 2.577480529830294 0.38822285293237185 1 R 1 -1 8.0989 0 0 0.83272 0 0 486.19967556738976 327.2728670709594 813.4725426383492 0 0 0 0 0 0 0 0 0.3494850021680094 R 0.83272 - 18 + NaN NaN 219718.2 NaN 22814 5888 28700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28706 112.13 NaN 730370 35 0 75838 0.327 + 14794 LILSRRPRR 9 84 583.8837841340971 1165.7530153349942 2 583.8836669921875 MULTI HCD FTMS 0 0 0 28705 617527.9375 0.748059675502154 19 -0.1612701416015625 1 Unmodified _LILSRRPRR_ ENSG00000162408|ENST00000377705|NOL9;ENST00000464665.1_1_1:6609704-6614547:-|nuORF 2.0597508629832335 0.3354026079994024 1 {M(Oxidation (M))|F} 1 9 12.764 0 0 1.0949 0 0 1000.6706616746411 0 1000.6706616746411 0 6.822084872641872 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0949 - 31 + NaN NaN 207864.6 NaN 22815 5889 28705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28708 112.14 NaN 1930600 35 0 305760 0.327 -1 0 118 471.34041036265904 940.6662677921181 2 471.34039306640625 MULTI HCD FTMS 0 0 0 28707 411874.96875 0.054595672701916356 -19 0.1685943603515625 1 NaN NaN 1 H 1 -1 3.9794 0 0 0.42304 0 0 350.3150418840889 450.27915369205317 800.594195576142 0 0 0 0 0 0 0 0 0 H 0.42304 - 28 + NaN NaN 355494.7 NaN 22816 5890 28707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28710 112.14 NaN 3387000 35 0 1421700 0.327 -1 0 85 476.3270529972666 950.6395530613332 2 476.3268127441406 MULTI HCD FTMS 0 0 0 28709 2929216.75 0.7804884726266057 -9 0.0870208740234375 1 NaN NaN 1 S 1 -1 4.9164 0 0 0.51717 0 0 185.21409027012072 675.3816901142583 860.5957803843789 0 0 0 0 0 0.3807196863200844 0 0 0 S 0.51717 - 8 + NaN NaN 564764.6 NaN 22817 5891 28709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28711 112.15 NaN 1063800 35 0 282550 0.261 -1 0 91 509.3309616189649 1016.6473703047299 2 509.3306579589844 MULTI HCD FTMS 0 0 0 28709 598711.375 0.8294446925146273 1 -0.00872802734375 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.227 0 0 851.5713948182049 0 851.5713948182049 0 -0.09955584830827924 -0.09955584830827924 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.227 - 33 + NaN NaN 246493.2 NaN 22818 5891 28709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28714 112.16 NaN 4577500 35 0 1400400 0.327 + 30247 VKAKTLRKL 9 107 528.8663157143766 1055.718078495553 2 528.8662109375 MULTI HCD FTMS 0 0 0 28713 2157184.25 0.5768941662782814 17 -0.15128326416015625 1 Unmodified _VKAKTLRKL_ ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 0.6014990680409731 0.3464572424761564 1 N 1 9 7.3464 0 0 0.69586 0 0 669.4362009094187 269.2124653239103 938.6486662333291 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.69586 - 20 + NaN NaN 462993.4 NaN 22819 5893 28713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28715 112.16 NaN 2957800 35 0 445160 0.215 -1 0 148 462.8268056595208 923.6390583858416 2 462.8265075683594 MULTI HCD FTMS 0 0 0 28713 1795318 0.29784624797620707 -17 0.1491851806640625 2 NaN NaN 1 T 1 -1 6.9897 0 0 0.75676 0 0 360.28777874481983 459.2785738580688 819.5663526028886 0 0 0 0 0 0 0 0 0 T 0.75676 - 15 + NaN NaN 396883.1 NaN 22820 5893 28713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28717 112.17 NaN 2102600 35 0 386810 0.327 + 28774 TTKKKKKKK 9 119 559.3928114221902 1116.7710699111803 2 559.3925170898438 MULTI HCD FTMS 0 0 0 28716 1328830.75 0.4512528020119813 27 -0.24004364013671875 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0.5247636613948944 0.34703895399870666 1 A 1 9 5.4846 0 0 0.49111 0 0 174.2095745618297 868.5124798588093 1042.722054420639 0 0 0 0 0 0 0 0 0 A 0.49111 - 41 + NaN NaN 406733.5 NaN 22821 5894 28716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28718 112.17 NaN 1198700 35 0 191850 0.261 -1 0 92 581.4060309617289 1160.7975089902577 2 581.9078369140625 MULTI HCD FTMS 0 0 0 28716 540356.6875 0.39986057592604207 30 -0.26470184326171875 2 NaN NaN 1 T 1 -1 3.3322 0 0 0.28706 0 0 749.483674705807 307.24582849674067 1056.7295032025477 0 0 0 0 0 0 0 0.3054621874040891 0 T 0.28706 - 28 + NaN NaN 284923.3 NaN 22822 5894 28716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28720 112.18 NaN 8877900 35 0 2109500 0.326 -1 0 103 493.35362079082364 984.6926886484473 2 493.3536071777344 MULTI HCD FTMS 0 0 0 28719 6015222.5 0.9066880656227956 -2 0.01714324951171875 1 NaN NaN 1 K 1 -1 6.9897 0 0 0.70984 0 0 636.465254421688 217.10817896060783 853.5734333822958 0 0 0 0 0 0 0 0 0 K 0.70984 - 23 + NaN NaN 756714.9 NaN 22823 5895 28719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28722 112.18 NaN 1642600 35 0 238580 0.327 -1 0 125 539.8576570508346 1077.7007611684692 2 539.8574829101562 MULTI HCD FTMS 0 0 0 28721 758908.0625 0.4510736772344764 18 -0.1622161865234375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2522 0 0 912.6180260383895 0 912.6180260383895 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2522 - 50 + NaN NaN 394340.3 NaN 22824 5896 28721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28724 112.19 NaN 3673000 35 0 1010200 0.327 -1 0 110 495.83139602529195 989.6482391173839 2 495.831298828125 MULTI HCD FTMS 0 0 0 28723 2615651.25 0.8299372680809687 2 -0.01546478271484375 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4126 0 0 824.5654582109371 0 824.5654582109371 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4126 - 42 + NaN NaN 495178.7 NaN 22825 5897 28723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28725 112.19 NaN 463320 35 0 85271 0.261 -1 0 88 603.4190067126405 1204.8234604920808 2 603.4185791015625 MULTI HCD FTMS 0 0 0 28723 441281.8125 0.3179745436943889 34 -0.30501556396484375 2 NaN NaN 1 A 1 -1 5.0886 0 0 0.42236 0 0 482.3943355914933 648.3812960260374 1130.7756316175307 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.42236 - 33 + NaN NaN 153959.6 NaN 22826 5897 28723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28728 112.2 NaN 8901400 35 0 1727200 0.327 + 12625 KVRLVVVR 8 101 484.8401902938896 967.6658276545792 2 484.8398742675781 MULTI HCD FTMS 0 0 0 28727 5294722 1 0 0 1 Unmodified _KVRLVVVR_ REV__ENSG00000061794|ENST00000081029|MRPS35;REV__MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant 0.7936320650641473 0.540814922690045 1 A 1 -1 6.5938 0 0 0.68141 0 0 201.20867687735011 692.4075018608713 893.6161787382214 0 0 0 0 0 0.5 0 0 0 A 0.68141 - 15 + NaN NaN 623448.9 NaN 22827 5899 28727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28729 112.21 NaN 1672600 35 0 299920 0.261 + 28766 TTIKRIIKK 9 104 550.8794373017992 1099.7443216703982 2 550.8790893554688 MULTI HCD FTMS 0 0 0 28727 664028.5625 0.20473405950675552 27 -0.2490692138671875 2 Unmodified _TTIKRIIKK_ ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-2|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-4|ACE 0 0.3510170533115441 1 W 1 9 8.4113 0 0 0.76484 0 0 605.4861867600451 305.1607210471138 910.6469078071589 0 0 0 0 0 0.3807196863200844 0 0 0 W 0.76484 - 57 + NaN NaN 342177 NaN 22828 5899 28727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28730 112.21 NaN 1027900 35 0 172900 0.262 + 16627 LVVTKKKS 8 114 451.8049777195303 901.5954025058606 2 451.8045349121094 MULTI HCD FTMS 0 0 0 28727 160830.578125 0.04948409352715431 -22 0.18872833251953125 3 Unmodified _LVVTKKKS_ ENSG00000130762|ENST00000378378|ARHGEF16;nc|ENSG00000130762|Q5VV41-2|ARHGEF16 0.6014990680409731 0.5410999795511968 1 {M(Oxidation (M))|F} 1 8 10.969 0 0 1.2166 0 0 736.5124842703123 0 736.5124842703123 0 8.979400086720375 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2166 - 67 + NaN NaN 239015.6 NaN 22829 5899 28727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28733 112.22 NaN 5461500 35 0 1125500 0.327 + 12252 KLKKTKKR 8 104 515.366563747862 1028.7185745625238 2 515.366455078125 MULTI HCD FTMS 0 0 0 28732 3132106.25 0.5539450221141606 8 -0.07746124267578125 1 Unmodified _KLKKTKKR_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 0.6903765706972694 0.5409681170271811 1 T 1 7 5.7969 0 0 0.56351 0 0 413.26119038459257 511.4017305537906 924.6629209383832 0 0 0 0 0 0 0 0.3807196863200844 0 + T 0.56351 + + 21 + NaN NaN 519836.5 NaN 22830 5901 28732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28735 112.23 NaN 4106100 35 0 878160 0.327 + 14665 LGRLLKGKK 9 98 506.8530509105986 1011.6915488879972 2 506.8529968261719 MULTI HCD FTMS 0 0 0 28734 2845477.75 0.5572762774319459 12 -0.1151580810546875 1 Unmodified _LGRLLKGKK_ ENST00000265044.6_1_3:156260720-156260924:-|nuORF 1.844237919475145 0.33703635659052655 1 A 1 9 7.4084 0 0 0.73228 0 0 157.18305782326166 780.4598122073445 937.6428700306062 0 0 0 0 0 0.19238776965543153 0 0 0 A 0.73228 - 28 + NaN NaN 549838.4 NaN 22831 5902 28734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28736 112.23 NaN 2635100 35 0 592750 0.261 -1 0 106 449.3272727067819 896.6399924803638 2 449.3272399902344 MULTI HCD FTMS 0 0 0 28734 804538.5625 0.11001512344862352 -17 0.1455230712890625 2 NaN NaN 1 A 1 -1 5.4846 0 0 0.61168 0 0 174.21020075320706 648.3832354658726 822.5934362190796 0 0 0 0 0 0 0 0 0 A 0.61168 - 41 + NaN NaN 490998 NaN 22832 5902 28734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28737 112.24 NaN 1277700 35 0 276370 0.261 + 25738 SKVKKSIL 8 109 451.8049777195303 901.5954025058606 2 451.8053894042969 MULTI HCD FTMS 0 0 0 28734 212218.03125 0.06529490243056699 -19 0.16669464111328125 3 Unmodified _SKVKKSIL_ ENST00000590854.5_3_18:43431870-43432008:-|nuORF 1.844237919475145 0.5392561982033289 1 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.4968 0 0 736.5125910818357 0 736.5125910818357 0 10.395906230238126 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4968 - 50 + NaN NaN 279126.2 NaN 22833 5902 28734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28738 112.24 NaN 521130 35 0 44684 0.261 + 16559 LTVIKKLKVF 10 86 594.9057099010411 NaN 0 594.9063110351562 PEAK HCD FTMS 0 0 0 28734 284513.3125 0.7086525194983186 12 -0.1151580810546875 4 Unmodified _LTVIKKLKVF_ REV__ENSG00000185842|ENST00000682510|DNAH14;REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14;REV__nc|ENSG00000185842|Q0VDD8|DNAH14 0.35063188157827746 0.339884196735365 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.58846 0 0 686.700597192904 351.0366834347496 1037.7372806276535 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.58846 + + 10 + NaN NaN 177920.7 NaN 22834 5902 28734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28740 112.25 NaN 2699400 35 0 519370 0.327 -1 0 109 537.379838681644 1072.7451244300878 2 537.3795776367188 MULTI HCD FTMS 0 0 0 28739 1791774.625 0.4148228996225725 27 -0.2421417236328125 1 NaN NaN 1 A 1 -1 3.0989 0 0 0.28888 0 0 394.3406562318376 604.3552260313038 998.6958822631414 0 0 0 0 0 0 0 0 0 A 0.28888 - 19 + NaN NaN 512131.5 NaN 22835 5903 28739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28741 112.25 NaN 1241000 35 0 546870 0.263 -1 0 77 401.32648394209957 NaN 0 401.3263854980469 PEAK HCD FTMS 0 0 0 28739 82785.2421875 0.24246207216637605 11 -0.099761962890625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 288838.8 NaN 22836 5903 28739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28743 112.26 NaN 8463000 35 0 2048400 0.326 -1 0 109 471.34041036265904 940.6662677921181 2 471.3402099609375 MULTI HCD FTMS 0 0 0 28742 6147368.5 0.8148582557047429 -5 0.04999542236328125 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.58305 0 0 174.210127588185 692.4079491720348 866.6180767602198 0 0 0 0 0 0 0 0 0 A 0.58305 - 15 + NaN NaN 557511.1 NaN 22837 5904 28742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28744 112.26 NaN 4219400 35 0 1339500 0.22 -1 0 101 473.8182203817911 945.6218878303822 2 473.81793212890625 MULTI HCD FTMS 0 0 0 28742 2782315.25 0.86776997469343 -4 0.03790283203125 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5444 0 0 780.5391374415135 0 780.5391374415135 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5444 - 47 + NaN NaN 539436.5 NaN 22838 5904 28742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28745 112.26 NaN 1241000 35 0 274630 0.261 + 28872 TVTLVIVKT 9 95 487.3178901157419 972.6212272982838 2 487.3173828125 MULTI HCD FTMS 0 0 0 28742 493653.21875 0.7042236649848768 9 -0.08396148681640625 3 Unmodified _TVTLVIVKT_ nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;nc|ENSG00000164393|Q8IZF7|ADGRF2P 0.45834013312273997 0.3475424938045562 1 {M(Oxidation (M))|F} 1 9 13.979 0 0 1.4373 0 0 807.5386752736729 0 807.5386752736729 0 10.523787536356576 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4373 - 26 + NaN NaN 292177.3 NaN 22839 5904 28742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28747 112.27 NaN 3699400 35 0 1482500 0.327 -1 0 76 476.3270529972666 950.6395530613332 2 476.3267517089844 MULTI HCD FTMS 0 0 0 28746 3116141 0.8302943541406226 5 -0.04386138916015625 1 NaN NaN 1 R 1 -1 2.4743 0 0 0.26027 0 0 378.29874603183947 413.22724329166255 791.525989323502 0 0 0 0 0 0 0 0 0 R 0.26027 - 7 + NaN NaN 469121.9 NaN 22840 5905 28746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28750 112.28 NaN 7270000 35 0 1775000 0.327 -1 0 112 462.8268056595208 923.6390583858416 2 462.826904296875 MULTI HCD FTMS 0 0 0 28749 5632309 0.934409448962592 -3 0.0250396728515625 1 NaN NaN 1 T 1 -1 8.0989 0 0 0.87685 0 0 360.287212670349 459.27890955142817 819.5661222217772 0 0 0 0 0 0 0 0.2614393726401688 0 T 0.87685 - 22 + NaN NaN 534164.9 NaN 22841 5907 28749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28751 112.28 NaN 479020 35 0 58728 0.261 + 16540 LTQKKPKTKF 10 71 609.88134765625 NaN 0 609.88134765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LTQKKPKTKF_ REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1 2.9952420565917617 0.3376207769591857 1 {I|L} 1 -1 4.2917 0 0 0.35272 0 0 565.3398686505874 535.298826780834 1100.6386954314214 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 0.35272 + + 3 + NaN NaN 151977.7 NaN 22842 5907 28749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28752 112.29 NaN 540690 35 0 63885 0.261 + 14795 LILSRRPRR 9 81 583.8837841340971 1165.7530153349942 2 583.884033203125 MULTI HCD FTMS 0 0 0 28749 186837.265625 0.22633052823646096 37 -0.38826751708984375 3 Unmodified _LILSRRPRR_ ENSG00000162408|ENST00000377705|NOL9;ENST00000464665.1_1_1:6609704-6614547:-|nuORF 0.5247636613948944 0.34703895399870666 1 V 1 9 2.4743 0 0 0.21224 0 0 857.5703198777661 206.08619104556877 1063.656510923335 0 0 0 0 0 0 0 0 0 V 0.21224 - 19 + NaN NaN 170081.9 NaN 22843 5907 28749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28754 112.29 NaN 1492200 35 0 250010 0.327 + 28775 TTKKKKKKK 9 106 559.3928114221902 1116.7710699111803 2 559.89404296875 MULTI HCD FTMS 0 0 0 28753 307048.3125 0.14982568121684692 37 -0.38303375244140625 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 1 A 1 9 5.4846 0 0 0.49111 0 0 174.2101386067664 868.513108618085 1042.7232472248513 0 0 0 0 0 0 0 0 0 A 0.49111 - 95 + NaN NaN 306552.5 NaN 22844 5908 28753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28755 112.3 NaN 790280 35 0 120360 0.261 -1 0 96 581.4060309617289 1160.7975089902577 2 581.4066162109375 MULTI HCD FTMS 0 0 0 28753 424030.3125 0.19854455356070522 47 -0.47173309326171875 2 NaN NaN 1 A 1 -1 3.0989 0 0 0.26697 0 0 438.36696587107787 648.3811200725527 1086.7480859436305 0 0 0 0 0 0 0 0 0 A 0.26697 - 13 + NaN NaN 207600.4 NaN 22845 5908 28753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28757 112.3 NaN 6701100 35 0 1493100 0.327 -1 0 94 493.35362079082364 984.6926886484473 2 493.3536071777344 MULTI HCD FTMS 0 0 0 28756 5642599.5 0.8505217597086647 12 -0.10591888427734375 1 NaN NaN 1 K 1 -1 6.9897 0 0 0.70984 0 0 636.4651323513755 217.10817896060783 853.5733113119833 0 0 0 0 0 0 0 0 0 K 0.70984 - 23 + NaN NaN 675290.1 NaN 22846 5909 28756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28758 112.31 NaN 319410 35 0 46252 0.261 + 20447 PALILVKKPKL 11 69 610.4270434689865 NaN 0 610.4270629882812 PEAK HCD FTMS 0 0 0 28756 120339.296875 0.582964160759035 1 -0.00916290283203125 2 Unmodified _PALILVKKPKL_ REV__tr|U7SU52|U7SU52_FUSNUThreonine-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01024PE=4SV=1 0.3070304955306653 0.3412491863730806 1 H 1 -1 3.4949 0 0 0.28674 0 0 122.18204407696324 956.5618692576516 1078.7439133346147 0 0 0 0 0 0 0 0 0 H 0.28674 - 6 + NaN NaN 131605.2 NaN 22847 5909 28756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28760 112.31 NaN 3200200 35 0 1535200 0.327 -1 0 66 432.3004727861055 862.586392639011 2 432.30072021484375 MULTI HCD FTMS 0 0 0 28759 3353412.75 0.8225967074547635 -14 0.12743377685546875 1 NaN NaN 1 D 1 -1 5.401 0 0 0.62614 0 0 316.26089619816054 428.27622400455317 744.5371202027137 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.62614 - 6 + NaN NaN 470642.8 NaN 22848 5910 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28761 112.32 NaN 3007000 35 0 741500 0.238 -1 0 110 495.83139602529195 989.6482391173839 2 495.8314514160156 MULTI HCD FTMS 0 0 0 28759 2139211.5 0.6787645517181968 15 -0.1280670166015625 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.3636 0 0 824.5655039873043 0 824.5655039873043 0 8.89075625191822 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3636 - 58 + NaN NaN 472164.3 NaN 22849 5910 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28762 112.32 NaN 1229100 35 0 146080 0.261 -1 0 102 539.8576570508346 1077.7007611684692 2 539.8578491210938 MULTI HCD FTMS 0 0 0 28759 579005.9375 0.34414489748383775 32 -0.32915496826171875 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2155 0 0 912.6177971565536 0 912.6177971565536 0 6.901056208558032 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2155 - 68 + NaN NaN 265441.4 NaN 22850 5910 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28763 112.32 NaN 337530 35 0 54241 0.261 -1 0 85 603.4190067126405 1204.8234604920808 2 603.4199829101562 MULTI HCD FTMS 0 0 0 28759 228991.5625 0.16500450626616892 46 -0.45965576171875 4 NaN NaN 1 H 1 -1 4.6041 0 0 0.38214 0 0 465.3660594031317 599.3577364557249 1064.7237958588566 0 0 0 0 0 0 0 0 0 H 0.38214 - 68 + NaN NaN 134904.5 NaN 22851 5910 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28766 112.33 NaN 1114000 35 0 203060 0.335 + 12169 KKKKKVQLT 9 114 550.8794373017992 1099.7443216703982 2 550.8794555664062 MULTI HCD FTMS 0 0 0 28765 320100.71875 0.09869382629262685 40 -0.40911102294921875 1 Unmodified _KKKKKVQLT_ ENST00000527958.5_1_11:117041336-117041564:+|nuORF 0.5247636613948944 0.34703895399870666 1 A 1 9 7.034 0 0 0.63961 0 0 157.1833090027904 868.5127232438981 1025.6960322466884 0 0 0 0 0 0.1549471895720985 0 0 0 A 0.63961 - 39 + NaN NaN 334840.1 NaN 22852 5912 28765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28769 112.35 NaN 4356400 35 0 644940 0.327 + 23341 RKKKKIKT 8 116 515.366563747862 1028.7185745625238 2 515.3666381835938 MULTI HCD FTMS 0 0 0 28768 1490711.625 0.2636475962705484 21 -0.19329071044921875 1 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 1 A 1 8 5.4846 0 0 0.53314 0 0 174.20998519336496 780.460436793272 954.6704219866369 0 0 0 0 0 0 0 0 0 A 0.53314 - 42 + NaN NaN 703522.2 NaN 22853 5914 28768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28770 112.35 NaN 1051800 35 0 290420 0.261 -1 0 89 478.3964236547547 NaN 0 478.396728515625 PEAK HCD FTMS 0 0 0 28768 205371.421875 0.44029081540841036 -10 0.09039306640625 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.9691 0 0 0.62518 0 0 477.4045588800188 327.27253137760005 804.6770902576188 0 0 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 0.62518 - 19 + NaN NaN 238668.3 NaN 22854 5914 28768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28772 112.35 NaN 8834800 35 0 2422400 0.327 -1 0 86 449.3272727067819 896.6399924803638 2 449.3272705078125 MULTI HCD FTMS 0 0 0 28771 6529755.5 0.8928992231144028 -4 0.02817535400390625 1 NaN NaN 1 A 1 -1 4.6041 0 0 0.51348 0 0 174.21040735485366 648.3805215357963 822.59092889065 0 0 0 0 0 0 0 0 0 A 0.51348 - 11 + NaN NaN 514175.8 NaN 22855 5915 28771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28773 112.36 NaN 11048000 35 0 3820400 0.166 -1 0 97 440.81371842464154 879.6128839160831 2 440.81378173828125 MULTI HCD FTMS 0 0 0 28771 5029861 0.8650671253884955 -7 0.062042236328125 2 NaN NaN 1 A 1 -1 8.4113 0 0 0.95625 0 0 157.1830375809597 648.3828282300516 805.5658658110112 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.95625 - 23 + NaN NaN 697390.3 NaN 22856 5915 28771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28774 112.36 NaN 2659300 35 0 481160 0.247 + 14666 LGRLLKGKK 9 107 506.8530509105986 1011.6915488879972 2 506.85302734375 MULTI HCD FTMS 0 0 0 28771 1423624 0.2788114871686403 25 -0.25499725341796875 3 Unmodified _LGRLLKGKK_ ENST00000265044.6_1_3:156260720-156260924:-|nuORF 1.844237919475145 0.33703635659052655 1 A 1 9 5.4846 0 0 0.54212 0 0 157.18319627649424 780.4611390886496 937.6443353651439 0 0 0 0 0 0 0 0 0 A 0.54212 - 20 + NaN NaN 459528.1 NaN 22857 5915 28771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28776 112.37 NaN 4201900 35 0 1520000 0.327 + 25728 SKKVVTKL 8 109 451.8049777195303 901.5954025058606 2 451.8050842285156 MULTI HCD FTMS 0 0 0 28775 2704400 0.8320854410585121 -5 0.0388336181640625 1 Unmodified _SKKVVTKL_ REV__ENSG00000156802|ENST00000287394|ATAD2;REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF 1.844237919475145 0.5392561982033289 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.4968 0 0 736.5126063406248 0 736.5126063406248 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4968 - 17 + NaN NaN 477372 NaN 22858 5916 28775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28778 112.37 NaN 3893400 35 0 985850 0.327 -1 0 136 427.31393620894573 852.6133194846915 2 427.3138122558594 MULTI HCD FTMS 0 0 0 28777 2724273 0.48921443249854074 -10 0.09165191650390625 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.8198 0 0 174.20988168198 604.3543853924638 778.5642670744437 0 0 0 0 0 0 0 0 0 A 0.8198 - 9 + NaN NaN 504616.8 NaN 22859 5917 28777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28779 112.38 NaN 3559600 35 0 1040000 0.223 -1 0 100 418.8006959379244 835.5868389426488 2 418.80047607421875 MULTI HCD FTMS 0 0 0 28777 1760663.75 0.3932285990080081 -6 0.0457000732421875 2 NaN NaN 1 A 1 -1 6.9897 0 0 0.8365 0 0 157.1834138099602 604.3543573327811 761.5377711427413 0 0 0 0 0 0 0 0 0 A 0.8365 - 28 + NaN NaN 482182.9 NaN 22860 5917 28777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28780 112.38 NaN 1785500 35 0 314740 0.261 -1 0 109 537.379838681644 1072.7451244300878 2 537.3796997070312 MULTI HCD FTMS 0 0 0 28777 1209679.375 0.28005905371671463 41 -0.417266845703125 3 NaN NaN 1 A 1 -1 5.4846 0 0 0.51126 0 0 174.21042515371283 824.4854566809449 998.6958818346577 0 0 0 0 0 0 0 0 0 A 0.51126 - 34 + NaN NaN 351010.7 NaN 22861 5917 28777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28782 112.38 NaN 6587800 35 0 1646400 0.327 -1 0 94 471.34041036265904 940.6662677921181 2 471.3402404785156 MULTI HCD FTMS 0 0 0 28781 4317214.5 0.5722640308569795 9 -0.07781982421875 1 NaN NaN 1 H 1 -1 3.9794 0 0 0.42304 0 0 350.3151450087973 450.2806795709594 800.5958245797567 0 0 0 0 0 0 0 0 0 H 0.42304 - 25 + NaN NaN 451853.7 NaN 22862 5918 28781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28783 112.39 NaN 4195900 35 0 1128800 0.226 -1 0 122 473.8182203817911 945.6218878303822 2 473.81787109375 MULTI HCD FTMS 0 0 0 28781 2562589.25 0.7992401323401996 10 -0.08660888671875 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5444 0 0 780.5391679590916 0 780.5391679590916 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5444 - 66 + NaN NaN 582267.7 NaN 22863 5918 28781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28785 112.39 NaN 2314800 35 0 840600 0.327 -1 0 88 476.3270529972666 950.6395530613332 2 476.3266906738281 MULTI HCD FTMS 0 0 0 28784 1535802.875 0.4092139785027174 19 -0.19496917724609375 1 NaN NaN 1 D 1 -1 5.4846 0 0 0.57693 0 0 360.2877462646623 472.2965181940063 832.5842644586686 0 0 0 0 0 0 0 0.3494850021680094 0 D 0.57693 - 8 + NaN NaN 467068.6 NaN 22864 5919 28784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28787 112.4 NaN 5597200 35 0 1279700 0.327 -1 0 119 462.8268056595208 923.6390583858416 2 462.8268737792969 MULTI HCD FTMS 0 0 0 28786 3575685 0.5932121001375823 10 -0.08922576904296875 1 NaN NaN 1 N 1 -1 10.485 0 0 1.1351 0 0 791.5879699842776 0 791.5879699842776 0 0.6639311543577975 0 0 0 0 0 0 0 N 1.1351 - 37 + NaN NaN 434816.6 NaN 22865 5920 28786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28788 112.4 NaN 464480 35 0 35909 0.261 + 7397 FVLKKIKKK 9 92 566.4004881282857 NaN 0 566.4010009765625 PEAK HCD FTMS 0 0 0 28786 50745.78515625 0.22296792276870073 -17 0.15291595458984375 2 Unmodified _FVLKKIKKK_ ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant 0 0.29524684227089293 1 C 1 9 5.4846 0 0 0.48502 0 0 112.19419652706934 912.5389069732438 1024.733103500313 0 0 0 0 0 0 0 0 0 C 0.48502 - 14 + NaN NaN 161657.7 NaN 22866 5920 28786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28791 112.41 NaN 1011900 35 0 168220 0.327 + 28776 TTKKKKKKK 9 98 559.3928114221902 1116.7710699111803 2 559.3932495117188 MULTI HCD FTMS 0 0 0 28790 442403.5 0.15023419573554236 55 -0.51513671875 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0.5247636613948944 0.34703895399870666 1 H 1 9 4.6041 0 0 0.41227 0 0 438.3648120107552 538.3301485650999 976.694960575855 0 0 0 0 0 0 0 0 0 H 0.41227 - 54 + NaN NaN 241090.6 NaN 22867 5922 28790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28792 112.42 NaN 586090 35 0 89071 0.261 -1 0 88 581.4060309617289 1160.7975089902577 2 581.4063110351562 MULTI HCD FTMS 0 0 0 28790 357386.375 0.1673397306308232 61 -0.5632247924804688 2 NaN NaN 1 A 1 -1 3.0989 0 0 0.26697 0 0 394.3398000950878 692.4081684103163 1086.747968505404 0 0 0 0 0 0 0 0 0 A 0.26697 - 13 + NaN NaN 170407.6 NaN 22868 5922 28790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28794 112.42 NaN 4174000 35 0 894160 0.327 -1 0 96 493.35362079082364 984.6926886484473 2 493.35345458984375 MULTI HCD FTMS 0 0 0 28793 2464709.5 0.37151122653852414 26 -0.286651611328125 1 NaN NaN 1 Q 1 -1 5.4846 0 0 0.55698 0 0 658.520674343563 195.0951326959594 853.6158070395223 0 0 0 0 0 0 0 0 0 Q 0.55698 - 26 + NaN NaN 577282.5 NaN 22869 5923 28793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28795 112.43 NaN 295860 35 0 44658 0.261 + 30298 VKLFTKIIIK 10 73 601.9136352539062 NaN 0 601.9136352539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VKLFTKIIIK_ REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1 1.6526216038709556 0.33876987398426067 1 H 1 -1 5.4846 0 0 0.45636 0 0 105.15538482123277 956.5683687799436 1061.7237536011764 0 0 0 0 0 0 0 0 0 H 0.45636 - 8 + NaN NaN 126713.9 NaN 22870 5923 28793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28797 112.43 NaN 3879000 35 0 1797000 0.326 -1 0 65 432.3004727861055 862.586392639011 2 432.30047607421875 MULTI HCD FTMS 0 0 0 28796 4076618.25 1 0 0 1 NaN NaN 1 PPP 3 -1 10.177 0 0 1.1799 0 0 448.3399764786579 120.05045496158436 568.3904314402423 0 0 0 0 0 0 0 0 0 PPP 1.1799 - 22 + NaN NaN 349022.7 NaN 22871 5924 28796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28799 112.44 NaN 4358400 35 0 1349000 0.327 -1 0 104 429.79179463040043 857.5690363276009 2 429.7915344238281 MULTI HCD FTMS 0 0 0 28798 2391672 0.8389742238752999 -3 0.0245819091796875 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.5736 0 0 692.4863469738884 0 692.4863469738884 0 12.235790156711097 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5736 - 57 + NaN NaN 541681.2 NaN 22872 5925 28798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28800 112.44 NaN 2078600 35 0 404670 0.261 + 14866 LKKLVLYL 8 112 495.34057841538737 988.6666038975748 2 495.8313903808594 MULTI HCD FTMS 0 0 0 28798 82459.8984375 0.5172562890924245 3 -0.031097412109375 2 Unmodified _LKKLVLYL_ ENSG00000104332|ENST00000220772|SFRP1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.3249 0 0 823.5838077323389 0 823.5838077323389 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3249 - 51 + NaN NaN 397739.8 NaN 22873 5925 28798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28801 112.45 NaN 920620 35 0 99929 0.261 -1 0 102 539.8576570508346 1077.7007611684692 2 539.857421875 MULTI HCD FTMS 0 0 0 28798 181425.484375 0.10783422185750897 47 -0.4520721435546875 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.1575 0 0 912.6183617317489 0 912.6183617317489 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1575 - 16 + NaN NaN 228813.6 NaN 22874 5925 28798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28802 112.45 NaN 435900 35 0 25485 0.261 + 16558 LTVIKKLKVF 10 80 594.9061256856386 1187.797698438077 2 594.9057006835938 MULTI HCD FTMS 0 0 0 28798 136788.21875 0.8335415494151939 1 -0.0153961181640625 4 Unmodified _LTVIKKLKVF_ REV__ENSG00000185842|ENST00000682510|DNAH14;REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14;REV__nc|ENSG00000185842|Q0VDD8|DNAH14 0.35063188157827746 0.47344775436540215 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.58846 0 0 686.7005132347552 351.038768782807 1037.7392820175623 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.58846 + + 27 + NaN NaN 147542.2 NaN 22875 5925 28798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28805 112.46 NaN 961220 35 0 167000 0.327 + 28767 TTIKRIIKK 9 91 550.8794373017992 1099.7443216703982 2 550.8797607421875 MULTI HCD FTMS 0 0 0 28804 312890.6875 0.0964708210631145 55 -0.5095367431640625 1 Unmodified _TTIKRIIKK_ ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-2|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-4|ACE 0 0.3510170533115441 1 RRH 3 8 6.9627 0 0 0.63312 0 0 0 647.4551730710419 647.4551730710419 0.9459400514778 0 0 0 0 0 0 0 0 RRH 0.63312 - 38 NaN NaN 232199.7 NaN 22876 5927 28804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28806 112.47 NaN 789060 35 0 316130 0.261 -1 0 76 586.4163200242334 585.4090435576334 1 588.4241943359375 MULTI HCD FTMS 0 0 0 28804 494552.15625 0.018107589119120065 127 -1.0029525756835938 2 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.52936 0 0 195.17266644453196 240.1694277399047 435.34209418443663 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.52936 - 3 + NaN NaN 217247.4 NaN 22877 5927 28804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28808 112.47 NaN 3401700 35 0 695690 0.327 + 23342 RKKKKIKT 8 111 515.366563747862 1028.7185745625238 2 515.366455078125 MULTI HCD FTMS 0 0 0 28807 1230087.375 0.2175535322745596 35 -0.35686492919921875 1 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 1 A 1 8 5.4846 0 0 0.53314 0 0 174.20981606998754 780.4618468644713 954.6716629344589 0 0 0 0 0 0 0 0 0 A 0.53314 - 41 + NaN NaN 597711.5 NaN 22878 5928 28807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28809 112.47 NaN 3344600 35 0 1113500 0.243 + 30275 VKKKGIAA 8 122 407.7787860038752 813.5430190745504 2 407.7786560058594 MULTI HCD FTMS 0 0 0 28807 1150823.5 0.558079949333505 -8 0.07122802734375 2 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 0 0.5419923896992614 1 {M(Oxidation (M))|F} 1 8 12.474 0 0 1.5333 0 0 648.4604060147833 0 648.4604060147833 0 10.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5333 - 35 + NaN NaN 535750.6 NaN 22879 5928 28807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28811 112.48 NaN 7099400 35 0 1845900 0.327 -1 0 84 449.3272727067819 896.6399924803638 2 449.3271789550781 MULTI HCD FTMS 0 0 0 28810 4482913 0.6130075674333375 10 -0.1151885986328125 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.61168 0 0 174.2099955925815 648.3809359377018 822.5909315302833 0 0 0 0 0 0 0 0 0 A 0.61168 - 16 + NaN NaN 485451.7 NaN 22880 5929 28810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28812 112.48 NaN 1710800 35 0 244740 0.261 + 28638 TRLRIIKL 8 116 506.8530509105986 1011.6915488879972 2 506.8527526855469 MULTI HCD FTMS 0 0 0 28810 855067.0625 0.16746171694530698 39 -0.383514404296875 2 Unmodified _TRLRIIKL_ nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG853|Q9UQG0|ERVK-11 0.6903765706972694 0.5409681170271811 1 AC 2 8 9.5083 0 0 0.93984 0 0 157.1830008551122 677.4498761624523 834.6328770175644 0 0 0 0 0 0.1549471895720985 0 0 0 AC 0.93984 - 19 + NaN NaN 338603.9 NaN 22881 5929 28810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28814 112.49 NaN 3290500 35 0 1139400 0.327 + 25729 SKKVVTKL 8 100 451.8049777195303 901.5954025058606 2 451.80499267578125 MULTI HCD FTMS 0 0 0 28813 2049083.125 0.6304585992572028 9 -0.106048583984375 1 Unmodified _SKKVVTKL_ REV__ENSG00000156802|ENST00000287394|ATAD2;REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF 0.6014990680409731 0.5410999795511968 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.6198 0 0 736.5125910818357 0 736.5125910818357 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6198 - 18 + NaN NaN 405999.7 NaN 22882 5930 28813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28816 112.49 NaN 7398900 35 0 2476000 0.327 -1 0 110 427.31393620894573 852.6133194846915 2 427.3138732910156 MULTI HCD FTMS 0 0 0 28815 5265972.5 0.9456430204096365 4 -0.04412841796875 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.64326 0 0 174.20951515225016 604.3551680776728 778.564683229923 0 0 0 0 0 0 0 0 0 A 0.64326 - 10 + NaN NaN 420075.8 NaN 22883 5931 28815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28817 112.5 NaN 5783700 35 0 2108300 0.17 -1 0 76 418.8006959379244 835.5868389426488 2 418.8005065917969 MULTI HCD FTMS 0 0 0 28815 4166459.75 0.9305417518340772 8 -0.09926605224609375 2 NaN NaN 1 P 1 -1 7.232 0 0 0.8655 0 0 518.3969108194051 217.10833154849846 735.5052423679035 0 0 0 0 0 0.3252574989159953 0 0 0 P 0.8655 - 17 + NaN NaN 430183 NaN 22884 5931 28815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28818 112.5 NaN 4208300 35 0 1511400 0.204 -1 0 111 429.79179463040043 857.5690363276009 2 430.2933349609375 MULTI HCD FTMS 0 0 0 28815 1297672.375 1 0 0 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.6301 0 0 692.4861180920525 0 692.4861180920525 0 13.701813447471219 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6301 - 45 + NaN NaN 474641.8 NaN 22885 5931 28815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28820 112.5 NaN 4161500 35 0 922410 0.327 -1 0 89 471.34041036265904 940.6662677921181 2 471.3401794433594 MULTI HCD FTMS 0 0 0 28819 3044607.5 0.40357488846741135 23 -0.25966644287109375 1 NaN NaN 1 A 1 -1 3.9794 0 0 0.42304 0 0 174.20978488431814 692.4075976379494 866.6173825222675 0 0 0 0 0 0 0 0 0 A 0.42304 - 14 + NaN NaN 462874.5 NaN 22886 5932 28819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28821 112.51 NaN 1289900 35 0 196250 0.261 -1 0 98 537.379838681644 1072.7451244300878 2 537.379638671875 MULTI HCD FTMS 0 0 0 28819 651274.0625 0.1507797862999776 56 -0.51153564453125 2 NaN NaN 1 N 1 -1 2.7642 0 0 0.25768 0 0 104.21369655910117 851.4857695951531 955.6994661542543 0 0 0 0 0 0 0 0 0 N 0.25768 - 23 + NaN NaN 297438.2 NaN 22887 5932 28819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28823 112.51 NaN 2607000 35 0 510430 0.327 -1 0 110 473.8182203817911 945.6218878303822 2 473.81781005859375 MULTI HCD FTMS 0 0 0 28822 1393896.125 0.4347390918827477 25 -0.27542877197265625 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4783 0 0 780.5389390772557 0 780.5389390772557 0 10.880456295278407 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4783 - 79 + NaN NaN 460120.9 NaN 22888 5933 28822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28824 112.52 NaN 1717200 35 0 512380 0.261 -1 0 91 476.3270529972666 950.6395530613332 2 476.32672119140625 MULTI HCD FTMS 0 0 0 28822 1162719.375 0.30980604937723083 33 -0.335418701171875 2 NaN NaN 1 W 1 -1 3.0989 0 0 0.32599 0 0 130.19687902221466 631.3552088554693 761.552087877684 0 0 0 0 0 0 0 0 0 W 0.32599 - 13 + NaN NaN 366155.1 NaN 22889 5933 28822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28825 112.52 NaN 905480 35 0 249130 0.261 -1 0 77 478.3964236547547 NaN 0 478.396240234375 PEAK HCD FTMS 0 0 0 28822 267858.75 0.574255884168536 9 -0.1262359619140625 3 NaN NaN 1 YT 2 -1 6.9382 0 0 0.72668 0 0 75.16627660594584 612.4892061822874 687.6554827882333 0 0 0 0 0 0 0 0.5 0 YT 0.72668 - 11 + NaN NaN 227229.4 NaN 22890 5933 28822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28827 112.53 NaN 3897300 35 0 793450 0.327 -1 0 121 462.8268056595208 923.6390583858416 2 462.82696533203125 MULTI HCD FTMS 0 0 0 28826 2073428.5 0.34398524337857417 24 -0.2629547119140625 1 NaN NaN 1 AT 2 -1 9.6927 0 0 1.0494 0 0 289.260643023515 459.2784823053344 748.5391253288494 0 0 0 0 0 0 0 0.2614393726401688 0 AT 1.0494 - 18 + NaN NaN 362309.3 NaN 22891 5934 28826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28828 112.53 NaN 912200 35 0 72819 0.261 + 12106 KKKGKAKKK 9 86 522.3740362817533 NaN 0 522.3742065429688 PEAK HCD FTMS 0 0 0 28826 88622.8125 0.3406997251268645 1 -0.0126800537109375 2 Unmodified _KKKGKAKKK_ ENSG00000106299|ENST00000223023|WASL 0 0.29524684227089293 1 C 1 9 5.4846 0 0 0.52598 0 0 112.19554649766208 824.4865728861387 936.6821193838008 0 0 0 0 0 0 0 0 0 C 0.52598 - 8 + NaN NaN 232858.6 NaN 22892 5934 28826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28829 112.53 NaN 520660 35 0 50529 0.261 + -1 WCFWEDYRHNW 11 88 566.9024487010283 NaN 0 566.90234375 PEAK HCD FTMS 0 0 0 28826 41216.11328125 0.23446263468242412 5 -0.06781768798828125 3 Carbamidomethyl (C) _WC(Carbamidomethyl (C))FWEDYRHNW_ REV__ENSG00000025293|ENST00000374012|PHF20;REV__ENST00000481202.5_1_20:34389438-34450945:+|nuORF;REV__nc|ENSG00000025293|Q9BVI0-2|PHF20 0 0.34212014346876374 1 C(Carbamidomethyl (C)) 1 -1 3.0989 0 0 0.27381 0 0 204.3428372100754 764.3950289361936 968.737866146269 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.27381 + + 11 + NaN NaN 180107 NaN 22893 5934 28826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28831 112.54 NaN 7159800 35 0 2891400 0.327 -1 0 77 405.3011113499453 808.5876697666906 2 405.30108642578125 MULTI HCD FTMS 0 0 0 28830 3538410.25 0.797867305337481 -2 0.02515411376953125 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.86443 0 0 174.21001671025869 560.3291720025999 734.5391887128585 0 0 0 0 0 0 0 0 0 A 0.86443 - 20 + NaN NaN 817670.3 NaN 22894 5935 28830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28832 112.54 NaN 3175900 35 0 1016400 0.256 + 12065 KKAGKIGL 8 102 407.7787860038752 813.5430190745504 2 408.2804260253906 MULTI HCD FTMS 0 0 0 28830 971016.25 0.8270966730784751 -2 0.02515411376953125 2 Unmodified _KKAGKIGL_ REV__tr|U7T4U4|U7T4U4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00558PE=4SV=1 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.6101 0 0 648.4600398038458 0 648.4600398038458 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6101 - 35 + NaN NaN 550982.7 NaN 22895 5935 28830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28833 112.55 NaN 779930 35 0 116900 0.261 + 28777 TTKKKKKKK 9 112 559.3928114221902 1116.7710699111803 2 559.392333984375 MULTI HCD FTMS 0 0 0 28830 318988.90625 0.10832428264927622 68 -0.5808029174804688 3 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0.5247636613948944 0.34703895399870666 1 H 1 9 3.4949 0 0 0.31294 0 0 193.13303981229313 783.5449003817664 976.6779401940596 0 0 0 0 0 0 0 0 0 H 0.31294 - 45 + NaN NaN 203988.8 NaN 22896 5935 28830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28834 112.55 NaN 579460 35 0 69626 0.261 + 16520 LTKRREKSL 9 79 565.8550239107933 NaN 0 565.8544311523438 PEAK HCD FTMS 0 0 0 28830 52587.1015625 0.28526033847714444 1 -0.0225372314453125 4 Unmodified _LTKRREKSL_ REV__ENSG00000145703|ENST00000274364|IQGAP2;REV__nc|ENSG00000145703|Q13576-2|IQGAP2;REV__nc|ENSG00000145703|Q13576-3|IQGAP2 6.723162845929126 0.26266733336404485 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.61872 0 0 582.367241327643 397.2710054986938 979.6382468263369 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.61872 - 25 + NaN NaN 172842.3 NaN 22897 5935 28830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28835 112.55 NaN 504060 35 0 63796 0.261 + 12014 KHALLLKVIK 10 91 581.9076015684462 NaN 0 581.9075317382812 PEAK HCD FTMS 0 0 0 28830 60022.76953125 0.21374374202103508 8 -0.12029266357421875 5 Unmodified _KHALLLKVIK_ REV__ENSG00000132466|ENST00000358602|ANKRD17;REV__nc|ENSG00000132466|O75179-2|ANKRD17;REV__nc|ENSG00000132466|O75179-3|ANKRD17;REV__nc|ENSG00000132466|O75179-4|ANKRD17;REV__nc|ENSG00000132466|O75179-5|ANKRD17;REV__nc|ENSG00000132466|O75179-6|ANKRD17;REV__nc|ENSG00000132466|O75179-7|ANKRD17 1.4819007175156935 0.33891598740166873 1 W 1 -1 5.4846 0 0 0.47207 0 0 104.21015279995125 868.5124735099718 972.722626309923 0 0 0 0 0 0 0 0 0 W 0.47207 - 33 + NaN NaN 153292.8 NaN 22898 5935 28830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28836 112.56 NaN 1030400 35 0 166050 0.262 + 12608 KVISITKAL 9 96 486.8269487325919 971.6393445319839 2 486.8266906738281 MULTI HCD FTMS 0 0 0 28830 41639.32421875 0.15719716833340194 9 -0.1296234130859375 6 Unmodified _KVISITKAL_ tr|U7T2T8|U7T2T8_FUSNUTwo-componentsystem,sensorhistidinekinaseYesMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00411PE=4SV=1 1.6526216038709556 0.33848895094777925 1 {M(Oxidation (M))|F} 1 9 11.783 0 0 1.2127 0 0 806.5564720728026 0 806.5564720728026 0 6.936367815287046 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2127 - 52 + NaN NaN 251983.9 NaN 22899 5935 28830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28839 112.57 NaN 2371400 35 0 1017300 0.327 -1 0 75 432.3004727861055 862.586392639011 2 432.3005065917969 MULTI HCD FTMS 0 0 0 28838 2074552.875 0.5088906411582689 13 -0.148162841796875 1 NaN NaN 1 P 1 -1 6.5938 0 0 0.76442 0 0 642.4552413712361 120.05059992008046 762.5058412913165 0 0 0 0 0 0.3494850021680094 0 0 0 P 0.76442 - 12 + NaN NaN 441109.2 NaN 22900 5937 28838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28840 112.57 NaN 2277500 35 0 444090 0.261 -1 0 103 493.35362079082364 984.6926886484473 2 493.3534240722656 MULTI HCD FTMS 0 0 0 28838 1384879.625 0.20874603197332642 40 -0.361083984375 2 NaN NaN 1 Q 1 -1 5.4846 0 0 0.55698 0 0 658.5208574490317 195.09507166080314 853.6159291098348 0 0 0 0 0 0 0 0 0 Q 0.55698 - 27 + NaN NaN 426593.7 NaN 22901 5937 28838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28841 112.58 NaN 867420 35 0 117450 0.261 -1 0 88 539.8576570508346 1077.7007611684692 2 539.857177734375 MULTI HCD FTMS 0 0 0 28838 131356.4375 0.07807458402320726 59 -0.5023651123046875 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2155 0 0 912.6180718147567 0 912.6180718147567 0 6.532125137753438 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2155 - 34 + NaN NaN 205877.5 NaN 22902 5937 28838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28842 112.58 NaN 1368000 35 0 319530 0.261 -1 0 103 495.83139602529195 989.6482391173839 2 496.3332214355469 MULTI HCD FTMS 0 0 0 28838 195693.625 0.11474780936026965 42 -0.38047027587890625 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.3236 0 0 824.5660075273433 0 824.5660075273433 0 7.6413688858352184 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3236 - 71 + NaN NaN 288614 NaN 22903 5937 28838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28843 112.58 NaN 223130 35 0 48232 0.261 + 10261 IIYKILKKKG 10 49 602.4117414151974 NaN 0 602.4113159179688 PEAK HCD FTMS 0 0 0 28838 132360.578125 0.7069160647656408 9 -0.1139373779296875 5 Unmodified _IIYKILKKKG_ tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1 0.45834013312273997 0.33979201340002624 1 V 1 10 5.4846 0 0 0.45598 0 0 165.27727918786292 935.4400118463499 1100.7172910342128 0 0 0 0 0 0 0 0 0 V 0.45598 - 3 + NaN NaN 126828.3 NaN 22904 5937 28838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28845 112.59 NaN 1350800 35 0 195300 0.327 -1 0 115 495.34011217708456 988.6656714209691 2 495.8310852050781 MULTI HCD FTMS 0 0 0 28844 49897.6953125 0.7278063894534306 2 -0.02228546142578125 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.3249 0 0 823.5829515496786 0 823.5829515496786 0 6.866859085906503 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3249 - 79 + NaN NaN 321182 NaN 22905 5938 28844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28847 112.59 NaN 4516000 35 0 1179700 0.327 + 30276 VKKKGIAA 8 115 407.7787860038752 813.5430190745504 2 407.77874755859375 MULTI HCD FTMS 0 0 0 28846 2013520.625 0.9764359942093356 3 -0.0459442138671875 1 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 0 0.5419923896992614 1 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.6101 0 0 648.4602381681036 0 648.4602381681036 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6101 - 30 + NaN NaN 590727.9 NaN 22906 5939 28846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28848 112.6 NaN 2457100 35 0 540010 0.253 + 23343 RKKKKIKT 8 103 515.366563747862 1028.7185745625238 2 515.3667602539062 MULTI HCD FTMS 0 0 0 28846 722777.4375 0.12783058160927774 46 -0.39968109130859375 2 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 1 Q 1 8 6.2371 0 0 0.6063 0 0 680.5233363806864 217.10825525455314 897.6315916352395 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.6063 - 44 + NaN NaN 443357 NaN 22907 5939 28846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28849 112.6 NaN 752960 35 0 119040 0.261 + 12495 KRKITKTIL 9 87 550.8794373017992 1099.7443216703982 2 550.8793334960938 MULTI HCD FTMS 0 0 0 28846 270173.40625 0.08330017917313659 67 -0.54620361328125 3 Unmodified _KRKITKTIL_ CON__Q9TRI1 0.6014990680409731 0.3464572424761564 1 W 1 9 6.3515 0 0 0.57755 0 0 605.4857900315295 305.1601961725219 910.6459862040515 0 0 0 0 0 0.3252574989159953 0 0 0 W 0.57755 - 12 + NaN NaN 201945.6 NaN 22908 5939 28846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28850 112.6 NaN 200510 35 0 26257 0.261 + 16193 LPVLVVLRVVV 11 80 603.4201096640769 NaN 0 603.4207763671875 PEAK HCD FTMS 0 0 0 28846 114721.9765625 0.8316891264745868 2 -0.03122711181640625 4 Unmodified _LPVLVVLRVVV_ REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF;REV__nc|ENSG00000226800|Q8N1I8|CACTIN-AS1 0.35063188157827746 0.3411255017974031 1 H 1 -1 5.4955 0 0 0.45612 0 0 465.3716460469753 599.3623751275999 1064.7340211745752 0 0 0 0 0 0.23965182871044374 0 0 0 H 0.45612 - 7 + NaN NaN 127682.4 NaN 22909 5939 28846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28852 112.61 NaN 4447700 35 0 1183400 0.327 -1 0 92 449.3272727067819 896.6399924803638 2 449.3269958496094 MULTI HCD FTMS 0 0 0 28851 2473014.5 0.3381677500483216 21 -0.2017974853515625 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.61168 0 0 262.26353974395676 560.3288380291342 822.5923777730909 0 0 0 0 0 0 0 0 0 A 0.61168 - 16 + NaN NaN 518091.5 NaN 22910 5940 28851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28853 112.61 NaN 1833500 35 0 425490 0.255 + 23840 RRTLLLKI 8 100 506.8530509105986 1011.6915488879972 2 506.85302734375 MULTI HCD FTMS 0 0 0 28851 473021.71875 0.09263955150219005 50 -0.419830322265625 2 Unmodified _RRTLLLKI_ ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1 0.6903765706972694 0.5409681170271811 1 {M(Oxidation (M))|F} 1 8 4.6041 0 0 0.45509 0 0 184.1859827063468 677.4489797489314 861.6349624552781 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45509 - 25 + NaN NaN 362664.5 NaN 22911 5940 28851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28854 112.62 NaN 2021500 35 0 616250 0.259 + 12631 KVVKKVTT 8 96 451.8049777195303 901.5954025058606 2 452.30657958984375 MULTI HCD FTMS 0 0 0 28851 479854.875 0.2921180075361845 20 -0.19451141357421875 3 Unmodified _KVVKKVTT_ REV__CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;REV__CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;REV__ENSG00000198561|ENST00000399050|CTNND1;REV__nc|ENSG00000198561|O60716-10|CTNND1;REV__nc|ENSG00000198561|O60716-11|CTNND1;REV__nc|ENSG00000198561|O60716-12|CTNND1;REV__nc|ENSG00000198561|O60716-13|CTNND1;REV__nc|ENSG00000198561|O60716-14|CTNND1;REV__nc|ENSG00000198561|O60716-15|CTNND1;REV__nc|ENSG00000198561|O60716-16|CTNND1;REV__nc|ENSG00000198561|O60716-17|CTNND1;REV__nc|ENSG00000198561|O60716-18|CTNND1;REV__nc|ENSG00000198561|O60716-19|CTNND1;REV__nc|ENSG00000198561|O60716-2|CTNND1;REV__nc|ENSG00000198561|O60716-20|CTNND1;REV__nc|ENSG00000198561|O60716-21|CTNND1;REV__nc|ENSG00000198561|O60716-22|CTNND1;REV__nc|ENSG00000198561|O60716-23|CTNND1;REV__nc|ENSG00000198561|O60716-24|CTNND1;REV__nc|ENSG00000198561|O60716-3|CTNND1;REV__nc|ENSG00000198561|O60716-4|CTNND1;REV__nc|ENSG00000198561|O60716-5|CTNND1;REV__nc|ENSG00000198561|O60716-6|CTNND1;REV__nc|ENSG00000198561|O60716-7|CTNND1;REV__nc|ENSG00000198561|O60716-8|CTNND1;REV__nc|ENSG00000198561|O60716-9|CTNND1;REV__TMX2-CTNND1|1|fusion;REV__TMX2-CTNND1|10|fusion;REV__TMX2-CTNND1|11|fusion;REV__TMX2-CTNND1|12|fusion;REV__TMX2-CTNND1|13|fusion;REV__TMX2-CTNND1|14|fusion;REV__TMX2-CTNND1|15|fusion;REV__TMX2-CTNND1|2|fusion;REV__TMX2-CTNND1|3|fusion;REV__TMX2-CTNND1|4|fusion;REV__TMX2-CTNND1|5|fusion;REV__TMX2-CTNND1|6|fusion;REV__TMX2-CTNND1|7|fusion;REV__TMX2-CTNND1|8|fusion;REV__TMX2-CTNND1|9|fusion 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.4157 0 0 736.5127741873044 0 736.5127741873044 0 9.665266051846935 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4157 - 46 + NaN NaN 396816.8 NaN 22912 5940 28851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28855 112.62 NaN 392620 35 0 21754 0.261 -1 0 74 595.3823450614426 594.3750685948426 1 594.9054565429688 MULTI HCD FTMS 0 0 0 28851 114387.53125 0.4813553428896449 -41 0.4041595458984375 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.92274 0 0 93.27803597941131 351.03650474775185 444.31454072716315 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.92274 - 3 + NaN NaN 143019.7 NaN 22913 5940 28851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28857 112.63 NaN 4386000 35 0 1255800 0.327 -1 0 124 427.31393620894573 852.6133194846915 2 427.3138732910156 MULTI HCD FTMS 0 0 0 28856 3123142.25 0.5608418331958528 14 -0.1388092041015625 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.8198 0 0 174.20990992806043 604.3561714827804 778.5660814108408 0 0 0 0 0 0 0 0 0 A 0.8198 - 15 + NaN NaN 405350.2 NaN 22914 5941 28856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28858 112.63 NaN 4087300 35 0 1140300 0.196 -1 0 89 418.8006959379244 835.5868389426488 2 418.80059814453125 MULTI HCD FTMS 0 0 0 28856 2438977.75 0.5447240017545678 18 -0.17136383056640625 2 NaN NaN 1 PP 2 -1 6.4402 0 0 0.77074 0 0 518.3973991006551 120.05038629703358 638.4477853976887 0 0 0 0 0 0.3252574989159953 0 0 0 PP 0.77074 - 17 + NaN NaN 441161.9 NaN 22915 5941 28856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28859 112.63 NaN 3031000 35 0 686300 0.248 -1 0 127 429.79179463040043 857.5690363276009 2 429.7916259765625 MULTI HCD FTMS 0 0 0 28856 1510988.875 0.5300395366452162 13 -0.1324462890625 3 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5275 0 0 692.4860875744744 0 692.4860875744744 0 12.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5275 - 106 + NaN NaN 513909.4 NaN 22916 5941 28856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28860 112.64 NaN 1190300 35 0 177260 0.261 -1 0 102 478.3497906858791 954.6850284385582 2 478.8524475097656 MULTI HCD FTMS 0 0 0 28856 156712.890625 0.7335213353717651 -6 0.08636474609375 4 NaN NaN 1 C 1 -1 4.6041 0 0 0.48226 0 0 112.19673309094965 736.4353229226303 848.63205601358 0 0 0 0 0 0 0 0 0 C 0.48226 - 23 + NaN NaN 262546.6 NaN 22917 5941 28856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28862 112.64 NaN 2147600 35 0 443370 0.327 -1 0 104 471.34041036265904 940.6662677921181 2 471.34027099609375 MULTI HCD FTMS 0 0 0 28861 1250659.5 0.16577991357612057 33 -0.273284912109375 1 NaN NaN 1 P 1 -1 3.0989 0 0 0.32944 0 0 720.5351928182885 120.05022607974843 840.5854188980369 0 0 0 0 0 0 0 0 0 P 0.32944 - 14 + NaN NaN 426126.7 NaN 22918 5942 28861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28863 112.64 NaN 2272500 35 0 461280 0.255 + 25739 SKVKVTKL 8 124 451.8049777195303 901.5954025058606 2 451.8050842285156 MULTI HCD FTMS 0 0 0 28861 930160.75 0.28619036308203905 21 -0.1868743896484375 2 Unmodified _SKVKVTKL_ ENSG00000082269|ENST00000418814|FAM135A;FAM135A|p.K660Rfs*17|1|0.07|ENSG00000082269|chr6:70525062-70525063|-/GACTTTTGTTC|frameshift_variant;FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant;nc|ENSG00000082269|Q9P2D6-4|FAM135A 0.6014990680409731 0.5410999795511968 1 {M(Oxidation (M))|F} 1 8 12.764 0 0 1.4157 0 0 736.5125910818357 0 736.5125910818357 0 6.822084872641872 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4157 - 44 + NaN NaN 417330.8 NaN 22919 5942 28861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28864 112.65 NaN 2634400 35 0 1349300 0.261 -1 0 74 484.38483098521914 483.37755451861915 1 487.3835754394531 MULTI HCD FTMS 0 0 0 28861 37196.07421875 0.1872215033944557 24 -0.2091827392578125 3 NaN NaN 1 R 1 -1 5.4846 0 0 1.1346 0 0 97.12423708430988 227.12185083560783 324.2460879199177 0 0 0 0 0 0 0 0 0 R 1.1346 - 7 + NaN NaN 478494.9 NaN 22920 5942 28861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28865 112.65 NaN 1924400 35 0 325860 0.261 -1 0 114 473.8182203817911 945.6218878303822 2 473.8179931640625 MULTI HCD FTMS 0 0 0 28861 458746.40625 0.14307737318489142 34 -0.28214263916015625 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5444 0 0 780.5392137354588 0 780.5392137354588 0 8.917731411351749 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5444 - 141 + NaN NaN 375136 NaN 22921 5942 28861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28866 112.65 NaN 1074400 35 0 118250 0.261 -1 0 103 537.379838681644 1072.7451244300878 2 537.3799438476562 MULTI HCD FTMS 0 0 0 28861 391790.96875 0.09070552927537506 66 -0.5166091918945312 5 NaN NaN 1 A 1 -1 5.4846 0 0 0.51126 0 0 174.21069915925892 824.4854604200941 998.696159579353 0 0 0 0 0 0 0 0 0 A 0.51126 - 45 + NaN NaN 256352 NaN 22922 5942 28861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28868 112.66 NaN 2623800 35 0 399160 0.327 -1 0 120 462.8268056595208 923.6390583858416 2 462.82672119140625 MULTI HCD FTMS 0 0 0 28867 914343.875 0.15169117255482095 33 -0.26293182373046875 1 NaN NaN 1 T 1 -1 6.9897 0 0 0.75676 0 0 360.2877008345742 459.2785738580688 819.566274692643 0 0 0 0 0 0 0 0 0 T 0.75676 - 21 + NaN NaN 398741 NaN 22923 5943 28867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28869 112.66 NaN 1193300 35 0 299850 0.261 -1 0 82 476.3270529972666 950.6395530613332 2 476.326904296875 MULTI HCD FTMS 0 0 0 28867 401474.625 0.10697273148686906 43 -0.34372711181640625 2 NaN NaN 1 KP 2 -1 7.9588 0 0 0.8372 0 0 364.26422696251694 358.1918123834594 722.4560393459764 0 0 0 0 0 0 0 0 0 KP 0.8372 - 21 + NaN NaN 271787.8 NaN 22924 5943 28867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28871 112.67 NaN 1760700 35 0 340790 0.354 -1 0 99 515.4232548863638 514.4159784197637 1 515.4230346679688 MULTI HCD FTMS 0 0 0 28870 377617.9375 0.5198464247543073 12 -0.101959228515625 1 NaN NaN 1 C 1 -1 0.9691 0 0 0.18839 0 0 59.19647876331687 349.1868990533813 408.38337781669816 0 0 0 0 0 0 0 0 0 C 0.18839 - 8 + NaN NaN 515193.9 NaN 22925 5944 28870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28873 112.67 NaN 470920 35 0 51945 0.411 + 28778 TTKKKKKKK 9 108 559.3928114221902 1116.7710699111803 2 559.3931274414062 MULTI HCD FTMS 0 0 0 28872 158219.828125 0.05372929605614585 78 -0.5814437866210938 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 1 P 1 9 5.4846 0 0 0.49111 0 0 667.5037241006606 349.18610559635005 1016.6898296970107 0 0 0 0 0 0 0 0 0 P 0.49111 - 65 + NaN NaN 221420.8 NaN 22926 5945 28872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28875 112.68 NaN 330080 35 0 31950 0.327 + 12505 KRLLVPILLP 10 76 581.4056749429467 NaN 0 581.4044799804688 PEAK HCD FTMS 0 0 0 28874 262920.875 1 0 0 1 Unmodified _KRLLVPILLP_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 0.45834013312273997 0.33979201340002624 1 A 1 10 3.0989 0 0 0.26697 0 0 394.3377648255433 692.4072359674436 1086.745000792987 0 0 0 0 0 0 0 0 0 A 0.26697 - 8 + NaN NaN 130955.7 NaN 22927 5946 28874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28876 112.69 NaN 350490 35 0 40985 0.261 + 7398 FVLKKIKKK 9 87 566.4004881282857 NaN 0 566.4011840820312 PEAK HCD FTMS 0 0 0 28874 157849.03125 0.6935604701059488 6 -0.059906005859375 2 Unmodified _FVLKKIKKK_ ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant 0 0.29524684227089293 1 V 1 8 5.4846 0 0 0.48502 0 0 582.4559922704401 446.2445467584594 1028.7005390288996 0 0 0 0 0 0 0 0 0 + V 0.48502 + + 14 + NaN NaN 135310 NaN 22928 5946 28874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28878 112.69 NaN 1501200 35 0 265350 0.327 -1 0 87 493.35362079082364 984.6926886484473 2 493.35345458984375 MULTI HCD FTMS 0 0 0 28877 745965.25 0.11244102600432904 50 -0.38555145263671875 1 NaN NaN 1 K 1 -1 6.9897 0 0 0.70984 0 0 636.4651323513755 217.1081484430297 853.5732807944052 0 0 0 0 0 0 0 0 0 K 0.70984 - 65 + NaN NaN 316235.7 NaN 22929 5947 28877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28879 112.7 NaN 332180 35 0 36841 0.261 + 7399 FVLKKIKKK 9 87 566.4004881282857 NaN 0 566.3994750976562 PEAK HCD FTMS 0 0 0 28877 36158.8203125 0.15887540275553025 7 -0.06624603271484375 2 Unmodified _FVLKKIKKK_ ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant 0.5247636613948944 0.2927039108006614 1 SV 2 8 3.1876 0 0 0.28189 0 0 203.3458238134088 738.3264864557249 941.6723102691337 0 0 0 0 0 0 0 0 0 SV 0.28189 - 26 + NaN NaN 141414.8 NaN 22930 5947 28877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28881 112.7 NaN 869820 35 0 81585 0.326 + 22151 QKKKKKKK 8 80 522.374355893178 1042.7341588531558 2 522.373779296875 MULTI HCD FTMS 0 0 0 28880 185619.453125 0.9377638526384791 -2 0.01831817626953125 1 Unmodified _QKKKKKKK_ AluSc_dup13832|chr7:33006087-33006413:-|2.660605299313354|0.4159080058002372|2.68|521.0|7|2|sense;AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|7|3|sense;AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|4|1|sense;ENSG00000070814|ENST00000643257|TCOF1;ENSG00000111300|ENST00000261745|NAA25;ENSG00000129292|ENST00000395386|PHF20L1;ENSG00000167978|ENST00000301740|SRRM2;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;ENST00000323571.8_1_17:38438263-38438389:+|nuORF;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;ENST00000607315.1_1_8:30013391-30013664:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;PHF20L1|p.K576E|1|1.0|ENSG00000129292|chr8:132825353-132825353|A/G|missense_variant;REV__ENSG00000147649|ENST00000336273|MTDH;REV__nc|ENSG00000067066|P23497-5|SP100;REV__PITX1|p.A190Gfs*382|1|0.23|ENSG00000069011|chr5:135029157-135029158|-/A|frameshift_variant;SRRM2|p.A921Efs*27|1|0.11|ENSG00000167978|chr16:2763289-2763290|-/AACAAAACTGGAGGCTTCAAACTTC|frameshift_variant 0 0.5419923896992614 1 C 1 8 5.4846 0 0 0.52598 0 0 112.19461529384223 824.4857763633232 936.6803916571655 0 0 0 0 0 0 0 0 0 C 0.52598 - 12 + NaN NaN 212498.4 NaN 22931 5948 28880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28882 112.7 NaN 317670 35 0 30985 0.261 + 408 AKHILKLLLL 10 79 581.4056749429467 NaN 0 581.406005859375 PEAK HCD FTMS 0 0 0 28880 110782.1953125 0.4213518432589272 2 -0.01590728759765625 2 Unmodified _AKHILKLLLL_ L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|72|2|anti-sense 1.4819007175156935 0.33891598740166873 1 G 1 10 4.6041 0 0 0.39663 0 0 364.3015099427308 736.4337862604124 1100.7352962031432 0 0 0 0 0 0 0 0 0 G 0.39663 - 5 + NaN NaN 135126.8 NaN 22932 5948 28880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28885 112.72 NaN 3944700 35 0 2290900 0.327 -1 0 66 431.30237721787046 860.5902015025409 2 431.30242919921875 MULTI HCD FTMS 0 0 0 28884 2281579.75 1 0 0 1 NaN NaN 1 {I|L} 1 -1 4.6041 0 0 0.53499 0 0 158.19841568818464 586.2977999322874 744.496215620472 0 0 0 0 0 0 0 0 0 {I|L} 0.53499 - 7 + NaN NaN 660667.7 NaN 22933 5950 28884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28886 112.72 NaN 3049200 35 0 818800 0.252 + 30277 VKKKGIAA 8 124 407.7787860038752 813.5430190745504 2 407.7787170410156 MULTI HCD FTMS 0 0 0 28884 1202879.75 0.5833240891711884 14 -0.11946868896484375 2 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 2.577480529830294 0.5381683276125971 1 {M(Oxidation (M))|F} 1 8 12.474 0 0 1.5333 0 0 648.4603754972052 0 648.4603754972052 0 2.6413688858352202 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5333 - 38 + NaN NaN 516993.2 NaN 22934 5950 28884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28887 112.72 NaN 1449700 35 0 279260 0.261 + 23344 RKKKKIKT 8 106 515.366563747862 1028.7185745625238 2 515.3670654296875 MULTI HCD FTMS 0 0 0 28884 426877.125 0.07549758519467668 57 -0.430755615234375 3 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0.7936320650641473 0.540814922690045 1 AR 2 8 8.4691 0 0 0.82327 0 0 333.2883017806169 465.25373254947505 798.542034330092 0 0 0 0 0 0 0 0 0.5994850021680094 AR 0.82327 - 50 + NaN NaN 294029.7 NaN 22935 5950 28884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28888 112.73 NaN 1131400 35 0 161890 0.261 -1 0 85 495.83139602529195 989.6482391173839 2 495.83087158203125 MULTI HCD FTMS 0 0 0 28884 308361.78125 0.0978421470795108 55 -0.4169158935546875 4 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.2605 0 0 824.5656260576168 0 824.5656260576168 0 5.511525224473813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2605 - 45 + NaN NaN 255705 NaN 22936 5950 28884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28889 112.73 NaN 387690 35 0 79553 0.261 + 12517 KRRRKKAR 8 75 549.8756103515625 NaN 0 549.8756103515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KRRRKKAR_ ENSG00000176204|ENST00000409884|LRRTM4;nc|ENSG00000176204|Q86VH4-2|LRRTM4 0.7936320650641473 0.38822285293237185 1 {I|L}Y{M(Oxidation (M))|F} 3 8 8.6721 0 0 0.79366 0 0 327.25003495918105 339.1783048063664 666.4283397655474 0 0 0 0 0 0 0 0 0 {I|L}Y{M(Oxidation (M))|F} 0.79366 - 34 + NaN NaN 151954.7 NaN 22937 5950 28884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28891 112.74 NaN 512410 35 0 51935 0.326 + 12496 KRKITKTIL 9 84 550.8794373017992 1099.7443216703982 2 550.879638671875 MULTI HCD FTMS 0 0 0 28890 174989.203125 0.05395287484434599 79 -0.5709762573242188 1 Unmodified _KRKITKTIL_ CON__Q9TRI1 0.6014990680409731 0.3464572424761564 1 W 1 9 5.2423 0 0 0.47668 0 0 605.4855764084826 305.16001306705317 910.6455894755359 0 0 0 0 0 0.3252574989159953 0 0 0 W 0.47668 - 27 + NaN NaN 169662.3 NaN 22938 5951 28890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28893 112.74 NaN 891710 35 0 103180 0.327 + 12501 KRLKLNIK 8 90 506.8530509105986 1011.6915488879972 2 506.8533935546875 MULTI HCD FTMS 0 0 0 28892 291022.40625 0.0569956602908905 62 -0.45401763916015625 1 Unmodified _KRLKLNIK_ tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1 0.7936320650641473 0.540814922690045 1 E 1 8 5.0886 0 0 0.50298 0 0 551.4212374639723 328.2072460210941 879.6284834850663 0 0 0 0 0 0.5 0 0 0 E 0.50298 - 29 + NaN NaN 220842.5 NaN 22939 5952 28892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28894 112.75 NaN 281440 35 0 81442 0.261 + 12037 KIEKVKSKR 9 59 558.3676171717997 NaN 0 558.3848266601562 PEAK HCD FTMS 0 0 0 28892 25252.78125 0.14001317850181955 7 -0.05442047119140625 2 Unmodified _KIEKVKSKR_ REV__ENSG00000111247|ENST00000352618|RAD51AP1;REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1;REV__nc|ENSG00000111247|Q96B01|RAD51AP1 3.2813086475875832 0.27934607848455584 1 K 1 -1 3.9794 0 0 0.35699 0 0 616.3976661289524 367.19577966861567 983.5934457975682 0 0 0 0 0 0 0 0 0 K 0.35699 + + 2 + NaN NaN 118743.8 NaN 22940 5952 28892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28896 112.75 NaN 2404000 35 0 580510 0.327 -1 0 124 427.31393620894573 852.6133194846915 2 427.3138732910156 MULTI HCD FTMS 0 0 0 28895 1219896.75 0.21906435084078 26 -0.19781494140625 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.64326 0 0 174.20954128291834 604.3545015924436 778.564042875362 0 0 0 0 0 0 0 0 0 A 0.64326 - 8 + NaN NaN 325659.6 NaN 22941 5953 28895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28898 112.76 NaN 1297600 35 0 235620 0.349 -1 0 117 471.34041036265904 940.6662677921181 2 471.3401794433594 MULTI HCD FTMS 0 0 0 28897 835025.125 0.11068591655553671 45 -0.33254241943359375 1 NaN NaN 1 R 1 -1 5.4846 0 0 0.58305 0 0 174.2099932626789 607.3218335614866 781.5318268241656 0 0 0 0 0 0 0 0 0 R 0.58305 - 45 + NaN NaN 407505.7 NaN 22942 5954 28897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28900 112.76 NaN 1458900 35 0 237700 0.327 + 12213 KKTKTALL 8 94 451.8049777195303 901.5954025058606 2 451.8046875 MULTI HCD FTMS 0 0 0 28899 459731.5 0.1414494482864929 34 -0.25812530517578125 1 Unmodified _KKTKTALL_ ENSG00000155324|ENST00000285689|GRAMD2B;ENST00000504859.5_1_5:125807941-125819298:+|nuORF;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B 0.6014990680409731 0.5410999795511968 1 {M(Oxidation (M))|F} 1 8 12.764 0 0 1.4157 0 0 736.5123774587888 0 736.5123774587888 0 8.784809756568528 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4157 - 40 + NaN NaN 337182.7 NaN 22943 5955 28899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28902 112.77 NaN 1931200 35 0 974690 0.369 -1 0 83 486.39361792656445 485.38634145996446 1 487.3832092285156 MULTI HCD FTMS 0 0 0 28901 92218.109375 0.808806569659909 -5 0.0353240966796875 1 NaN NaN 1 R 1 -1 5.4846 0 0 1.1299 0 0 99.13244849297071 227.12195764713127 326.254406140102 0 0 0 0 0 0 0 0 0 R 1.1299 - 6 + NaN NaN 575570 NaN 22944 5956 28901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28904 112.78 NaN 1707500 35 0 393330 0.327 -1 0 76 432.3004727861055 862.586392639011 2 432.3000183105469 MULTI HCD FTMS 0 0 0 28903 795860.3125 0.19522561684553122 33 -0.25229644775390625 1 NaN NaN 1 P 1 -1 8.0989 0 0 0.93891 0 0 545.3986922989704 217.1081484430297 762.5068407420001 0 0 0 0 0 0.5 0 0 0 P 0.93891 - 26 + NaN NaN 340776.4 NaN 22945 5957 28903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28905 112.78 NaN 1750300 35 0 249560 0.261 -1 0 135 462.8268056595208 923.6390583858416 2 462.82684326171875 MULTI HCD FTMS 0 0 0 28903 588962.0625 0.09770978763425385 47 -0.34954833984375 2 NaN NaN 1 T 1 -1 5.4846 0 0 0.5938 0 0 360.2869372076331 459.27866541080317 819.5656026184363 0 0 0 0 0 0 0 0 0 T 0.5938 - 15 + NaN NaN 348836.3 NaN 22946 5957 28903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28906 112.78 NaN 617000 35 0 72929 0.261 -1 0 82 537.379838681644 1072.7451244300878 2 537.3795776367188 MULTI HCD FTMS 0 0 0 28903 163277.921875 0.03780130606355437 81 -0.5814361572265625 3 NaN NaN 1 A 1 -1 3.0989 0 0 0.28888 0 0 174.2102054919962 824.4842915749851 998.6944970669813 0 0 0 0 0 0 0 0 0 A 0.28888 - 6 + NaN NaN 182271.8 NaN 22947 5957 28903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28908 112.79 NaN 323660 35 0 18836 0.411 + -1 WCFWEDYRHNW 11 100 566.9022827148438 NaN 0 566.9022827148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _WC(Carbamidomethyl (C))FWEDYRHNW_ REV__ENSG00000025293|ENST00000374012|PHF20;REV__ENST00000481202.5_1_20:34389438-34450945:+|nuORF;REV__nc|ENSG00000025293|Q9BVI0-2|PHF20 0.09484139111097674 0.34185110575506755 1 S 1 -1 4.6041 0 0 0.4068 0 0 204.34450898115512 837.3912154547345 1041.7357244358896 0 0 0 0 0 0 0 0 0 S 0.4068 - 64 + NaN NaN 180180.9 NaN 22948 5958 28907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28910 112.8 NaN 646610 35 0 151070 0.411 -1 0 83 476.3270529972666 950.6395530613332 2 476.3268127441406 MULTI HCD FTMS 0 0 0 28909 276160.25 0.07358277318422461 59 -0.425323486328125 1 NaN NaN 1 W 1 -1 2.4743 0 0 0.26027 0 0 130.1961723434186 631.3553930096201 761.5515653530388 0 0 0 0 0 0 0 0 0 W 0.26027 - 14 + NaN NaN 287462.2 NaN 22949 5959 28909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28912 112.8 NaN 435910 35 0 49457 0.411 -1 0 89 478.3497906858791 954.6850284385582 2 478.34906005859375 MULTI HCD FTMS 0 0 0 28911 89639.203125 0.26353765290203796 18 -0.13231658935546875 1 NaN NaN 1 C 1 -1 5.4846 0 0 0.57449 0 0 112.19723420390956 736.4349045467042 848.6321387506138 0 0 0 0 0 0 0 0 0 C 0.57449 - 32 + NaN NaN 217741.4 NaN 22950 5960 28911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28915 112.82 NaN 750260 35 0 131910 0.327 -1 0 76 493.35362079082364 984.6926886484473 2 493.352783203125 MULTI HCD FTMS 0 0 0 28914 313936.875 0.047320413820339205 65 -0.46893310546875 1 NaN NaN 1 K 1 -1 6.9897 0 0 0.70984 0 0 636.465170697668 217.10823999576408 853.573410693432 0 0 0 0 0 0 0 0 0 K 0.70984 - 32 + NaN NaN 217328.5 NaN 22951 5962 28914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28916 112.82 NaN 794520 35 0 119540 0.261 + 28196 TKRRLLLI 8 96 506.8530509105986 1011.6915488879972 2 506.8534851074219 MULTI HCD FTMS 0 0 0 28914 246187.71875 0.048214952815731155 72 -0.5139541625976562 2 Unmodified _TKRRLLLI_ nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 0.6014990680409731 0.5410999795511968 1 C 1 8 3.9794 0 0 0.39334 0 0 228.21264403363904 677.447628659203 905.660272692842 0 0 0 0 0 0 0 0 0 C 0.39334 - 23 + NaN NaN 208251.5 NaN 22952 5962 28914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28918 112.83 NaN 557550 35 0 158050 0.327 + 12577 KTLLRLKR 8 82 514.3584359135679 NaN 0 514.3584594726562 PEAK HCD FTMS 0 0 0 28917 249814.8125 0.3215623457116394 113 -0.7882232666015625 1 Unmodified _KTLLRLKR_ REV__ENST00000479977.6_1_1:108152551-108231104:-|nuORF 2.0597508629832335 0.38822285293237185 1 A 1 -1 3.0989 0 0 0.30183 0 0 172.19555458645738 780.4607222392266 952.656276825684 0 0 0 0 0 0 0 0 0 A 0.30183 - 9 + NaN NaN 184270.4 NaN 22953 5963 28917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28919 112.83 NaN 171050 35 0 21270 0.261 + 12506 KRLLVPILLP 10 59 581.4056749429467 NaN 0 581.4063110351562 PEAK HCD FTMS 0 0 0 28917 63582.96875 0.2418330942721836 16 -0.121978759765625 2 Unmodified _KRLLVPILLP_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 0.45834013312273997 0.33979201340002624 1 T 1 10 2.5886 0 0 0.22301 0 0 562.5134850403871 494.2213228815063 1056.7348079218934 0 0 0 0 0 0.25 0 0 0 T 0.22301 - 6 + NaN NaN 114235.3 NaN 22954 5963 28917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28921 112.84 NaN 2265500 35 0 484740 0.326 -1 0 84 418.8006959379244 835.5868389426488 2 418.80059814453125 MULTI HCD FTMS 0 0 0 28920 1047815.5625 0.23402029243838465 41 -0.29744720458984375 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.8365 0 0 157.18343174455498 604.3540977081451 761.5375294527 0 0 0 0 0 0 0 0 0 A 0.8365 - 23 + NaN NaN 393232.5 NaN 22955 5964 28920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28925 112.85 NaN 332870 35 0 31168 0.411 + 28768 TTIKRIIKK 9 95 550.8794373017992 1099.7443216703982 2 550.8794555664062 MULTI HCD FTMS 0 0 0 28924 110466.3125 0.03405910208398129 95 -0.6629409790039062 1 Unmodified _TTIKRIIKK_ ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-2|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-4|ACE 0 0.3510170533115441 1 W 1 9 6.2814 0 0 0.57117 0 0 605.4861257248889 305.16022669010005 910.646352414989 0 0 0 0 0 0.3807196863200844 0 0 0 W 0.57117 - 15 + NaN NaN 185649.1 NaN 22956 5967 28924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28927 112.86 NaN 583930 35 0 78328 0.411 + 30307 VKRVKKKK 8 104 507.366942417871 NaN 0 507.354736328125 PEAK HCD FTMS 0 0 0 28926 49955.8671875 0.9565120549953771 4 -0.02860260009765625 1 Unmodified _VKRVKKKK_ REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF 0 0.38822285293237185 1 A 1 -1 4.6041 0 0 0.45463 0 0 246.26343636907512 692.4079685833026 938.6714049523778 0 0 0 0 0 0 0 0 0 A 0.45463 - 12 + NaN NaN 267098.5 NaN 22957 5968 28926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28929 112.87 NaN 441100 35 0 35122 0.411 + 30390 VLLLLVLSL 9 111 491.8478935047752 NaN 0 491.8480529785156 PEAK HCD FTMS 0 0 0 28928 130296.4609375 0.465366577097686 -1 0.00728607177734375 1 Unmodified _VLLLLVLSL_ ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF 0.5247636613948944 0.2927039108006614 1 H 1 9 6.3515 0 0 0.647 0 0 105.15362907151298 736.4354443778618 841.5890734493748 0 0 0 0 0 0.1747425010840047 0 0 0 H 0.647 - 12 + NaN NaN 214769.5 NaN 22958 5969 28928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28931 112.88 NaN 396720 35 0 57192 0.411 + 23362 RKLLQKKL 8 84 513.8610491929628 NaN 0 513.8607788085938 PEAK HCD FTMS 0 0 0 28930 148846.015625 0.5955074814255255 7 -0.05248260498046875 1 Unmodified _RKLLQKKL_ ENSG00000095564|ENST00000265990|BTAF1 0.7936320650641473 0.38822285293237185 1 H 1 8 6.5938 0 0 0.64285 0 0 105.15288935718873 780.4606063872676 885.6134957444564 0 0 0 0 0 0.1989700043360188 0 0 0 H 0.64285 - 14 + NaN NaN 216472.2 NaN 22959 5970 28930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28934 112.89 NaN 594640 35 0 178750 0.327 -1 0 49 486.39361792656445 485.38634145996446 1 487.3833923339844 MULTI HCD FTMS 0 0 0 28933 59245.03515625 0.5196134900060921 11 -0.08657073974609375 1 NaN NaN 1 R 1 -1 5.4846 0 0 1.1299 0 0 99.13473731133008 227.1216219537719 326.256359265102 0 0 0 0 0 0 0 0 0 R 1.1299 - 2 + NaN NaN 172932.1 NaN 22960 5972 28933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28935 112.89 NaN 660300 35 0 189480 0.261 + 31194 VVKKTKIS 8 70 451.8049777195303 901.5954025058606 2 451.8046569824219 MULTI HCD FTMS 0 0 0 28933 119577.25 0.036791335899576234 51 -0.36585235595703125 2 Unmodified _VVKKTKIS_ ENST00000540992.1_1_12:16666501-16667302:+|nuORF 0 0.5419923896992614 1 {M(Oxidation (M))|F} 1 8 11.42 0 0 1.2666 0 0 736.5134913503904 0 736.5134913503904 0 6.815889512064128 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2666 - 11 + NaN NaN 180036.5 NaN 22961 5972 28933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28937 112.9 NaN 1025500 35 0 151190 0.373 -1 0 136 462.8268056595208 923.6390583858416 2 462.8268737792969 MULTI HCD FTMS 0 0 0 28936 416683.1875 0.06912843518064286 63 -0.44495391845703125 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.75676 0 0 245.23783489875888 604.3552536266185 849.5930885253774 0 0 0 0 0 0 0 0 0 A 0.75676 - 22 + NaN NaN 356355.7 NaN 22962 5973 28936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28940 112.91 NaN 810130 35 0 238180 0.327 -1 0 66 432.3004727861055 862.586392639011 2 432.3005676269531 MULTI HCD FTMS 0 0 0 28939 369440.75 0.09062431833051819 51 -0.366668701171875 1 NaN NaN 1 P 1 -1 5.7969 0 0 0.67204 0 0 545.3992110977986 217.10810266666252 762.5073137644611 0 0 0 0 0 0.3807196863200844 0 0 0 P 0.67204 - 16 + NaN NaN 213201.5 NaN 22963 5975 28939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28941 112.92 NaN 238400 35 0 26508 0.261 + 23356 RKKRRKTIL 9 62 400.2799845324859 NaN 0 400.2801208496094 PEAK HCD FTMS 0 0 0 28939 12123.263671875 0.4512287968239644 11 -0.08965301513671875 2 Unmodified _RKKRRKTIL_ ENST00000444067.2_1_1:78312795-78313113:+|nuORF 0.26902006276349055 0.29394320858957723 1 {I|L}W 2 8 9.464 0 0 1.1851 0 0 156.2611723237091 340.1036776178344 496.3648499415435 0 0 0 0 0 0 0 0 0 {I|L}W 1.1851 - 6 + NaN NaN 127308 NaN 22964 5975 28939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28943 112.92 NaN 472760 35 0 100640 0.411 + 11714 KAVLLKTKK 9 90 514.8648456652418 1027.7151383972835 2 515.36669921875 MULTI HCD FTMS 0 0 0 28942 45026.5234375 0.35987318695788567 1 -0.00732421875 1 Unmodified _KAVLLKTKK_ ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF 0.6014990680409731 0.3464572424761564 1 W 1 9 2.7642 0 0 0.26897 0 0 58.132183698167246 780.4600313775999 838.5922150757672 0 0 0 0 0 0 0 0 0 W 0.26897 - 27 + NaN NaN 226166.3 NaN 22965 5976 28942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28946 112.94 NaN 355010 35 0 66277 0.327 -1 0 65 493.35362079082364 984.6926886484473 2 493.3529357910156 MULTI HCD FTMS 0 0 0 28945 176357.359375 0.02658274287111789 81 -0.5627822875976562 1 NaN NaN 1 K 1 -1 6.9897 0 0 0.70984 0 0 636.4652239041098 217.10796533756096 853.5731892416708 0 0 0 0 0 0 0 0 0 K 0.70984 - 15 + NaN NaN 142511.6 NaN 22966 5978 28945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28947 112.94 NaN 415250 35 0 125620 0.268 -1 0 57 476.3270529972666 950.6395530613332 2 476.32659912109375 MULTI HCD FTMS 0 0 0 28945 210285.34375 0.05603043433340951 78 -0.541656494140625 2 NaN NaN 1 P 1 -1 3.9794 0 0 0.4186 0 0 492.36694425974343 358.19172083072505 850.5586650904685 0 0 0 0 0 0 0 0 0 P 0.4186 - 10 + NaN NaN 144072.8 NaN 22967 5978 28945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28949 112.95 NaN 315500 35 0 96568 0.411 + 19231 NKLKIKRK 8 86 514.3584359135679 NaN 0 514.3587646484375 PEAK HCD FTMS 0 0 0 28948 128868.6875 0.16588014548288732 129 -0.8826141357421875 1 Unmodified _NKLKIKRK_ REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 0.6903765706972694 0.38822285293237185 1 Q 1 -1 3.9794 0 0 0.38759 0 0 572.4436957023325 323.1713961236938 895.6150918260264 0 0 0 0 0 0 0 0 0 Q 0.38759 - 10 + NaN NaN 196168.9 NaN 22968 5979 28948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28951 112.96 NaN 1110700 35 0 198100 0.401 -1 0 96 418.8006959379244 835.5868389426488 2 418.80072021484375 MULTI HCD FTMS 0 0 0 28950 438436.125 0.09792081150546203 57 -0.39487457275390625 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.8365 0 0 157.18338622955315 604.3543184869749 761.537704716528 0 0 0 0 0 0 0 0 0 A 0.8365 - 11 + NaN NaN 410211.7 NaN 22969 5980 28950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28953 112.96 NaN 367220 35 0 47653 0.411 + 28197 TKRRLLLI 8 90 506.8530509105986 1011.6915488879972 2 506.85321044921875 MULTI HCD FTMS 0 0 0 28952 164213.921875 0.03216068833608008 91 -0.6248092651367188 1 Unmodified _TKRRLLLI_ nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 0.7936320650641473 0.540814922690045 1 {M(Oxidation (M))|F} 1 8 4.6041 0 0 0.45509 0 0 184.18558607825076 677.4490608918946 861.6346469701455 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45509 - 22 + NaN NaN 193849.9 NaN 22970 5981 28952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28956 112.98 NaN 204160 35 0 14871 0.411 -1 0 84 478.18141390766675 2863.0448246464007 6 478.3482360839844 MULTI HCD FTMS 0 0 0 28955 84925.2890625 0.7245356776152471 1 -0.00695037841796875 1 NaN NaN 1 {M(Oxidation (M))|F}A 2 -1 3.1876 0 0 0.11134 0 0 2020.5579265837189 621.3689823553656 2641.9269089390846 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A 0.11134 - 25 + NaN NaN 138803 NaN 22971 5983 28955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28958 112.98 NaN 791350 35 0 118010 0.327 -1 0 81 462.8268056595208 923.6390583858416 2 462.8269348144531 MULTI HCD FTMS 0 0 0 28957 325242.0625 0.05395820016268318 74 -0.5075454711914062 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.5938 0 0 245.235573412561 604.3556002252561 849.5911736378171 0 0 0 0 0 0 0 0 0 A 0.5938 - 15 + NaN NaN 208142.1 NaN 22972 5984 28957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28959 112.99 NaN 351150 35 0 68669 0.261 + 16331 LRKVLAKGK 9 72 506.8530509105986 1011.6915488879972 2 506.8529968261719 MULTI HCD FTMS 0 0 0 28957 154176.90625 0.030194976003932592 94 -0.6442718505859375 2 Unmodified _LRKVLAKGK_ OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant 0.5247636613948944 0.34703895399870666 1 {M(Oxidation (M))|F} 1 9 4.6041 0 0 0.45509 0 0 184.18528298777693 677.4491342468237 861.6344172346007 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45509 - 20 + NaN NaN 128656.8 NaN 22973 5984 28957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28961 112.99 NaN 1189800 35 0 220400 0.327 -1 0 71 418.8006959379244 835.5868389426488 2 418.8006591796875 MULTI HCD FTMS 0 0 0 28960 369905.78125 0.0826151683567633 62 -0.425262451171875 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.8365 0 0 157.1834473743508 604.3536471002561 761.5370944746069 0 0 0 0 0 0 0 0 0 A 0.8365 - 13 + NaN NaN 272181.4 NaN 22974 5985 28960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28962 113 NaN 327110 35 0 44427 0.261 + 23843 RRVLVKLV 8 76 491.8478935047752 NaN 0 491.8480529785156 PEAK HCD FTMS 0 0 0 28960 90638.140625 0.3237230002539183 15 -0.10330963134765625 2 Unmodified _RRVLVKLV_ REV__ENST00000539111.6_1_17:62488863-62489078:-|nuORF 0 0.38822285293237185 1 A 1 -1 4.7763 0 0 0.48654 0 0 215.22400633905903 692.4046114557249 907.6286177947838 0 0 0 0 0 0.2302046884880938 0 0 0 A 0.48654 - 5 + NaN NaN 124745.3 NaN 22975 5985 28960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28967 113.02 NaN 385630 35 0 46503 0.411 -1 0 93 462.8268056595208 923.6390583858416 2 462.8268127441406 MULTI HCD FTMS 0 0 0 28966 115253.9765625 0.019120826774687454 79 -0.5379104614257812 1 NaN NaN 1 A 1 -1 5.4846 0 0 0.5938 0 0 157.18309110050683 692.4043673150999 849.5874584156068 0 0 0 0 0 0 0 0 0 A 0.5938 - 11 + NaN NaN 202163.2 NaN 22976 5989 28966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28970 113.04 NaN 128070 35 0 9849.8 0.411 + 27404 SYTRYGLSW 9 66 566.7750488909174 NaN 0 566.7749633789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SYTRYGLSW_ REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 9.38312468134398 0.24977752951804 1 S 1 -1 12.857 0 0 1.1362 0 0 204.09143803072965 837.3892458146688 1041.4806838453985 0 0 0 0 0 0.8252574989159953 0 0 0 S 1.1362 + + 6 + NaN NaN 115633.2 NaN 22977 5991 28969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28972 113.04 NaN 306650 35 0 83155 0.411 + 22162 QKRIAVRL 8 82 492.32682784198107 NaN 0 492.3263854980469 PEAK HCD FTMS 0 0 0 28971 63586.9609375 1 0 0 1 Unmodified _QKRIAVRL_ REV__ENSG00000054654|ENST00000555002|SYNE2;REV__ENST00000394768.6_2_14:64542710-64692241:+|nuORF;REV__nc|ENSG00000054654|Q8WXH0-13|SYNE2;REV__nc|ENSG00000054654|Q8WXH0-7|SYNE2;REV__nc|ENSG00000054654|Q8WXH0|SYNE2 2.302733041254933 0.38822285293237185 1 A 1 -1 2.2185 0 0 0.22577 0 0 172.1574062069322 736.4320262105618 908.589432417494 0 0 0 0 0 0 0 0 0 A 0.22577 + + 14 + NaN NaN 176441.3 NaN 22978 5992 28971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28974 113.05 NaN 237400 35 0 27234 0.412 + 28244 TLKKKKRK 8 88 515.3652231270784 NaN 0 515.3670654296875 PEAK HCD FTMS 0 0 0 28973 34922.05859375 0.3544446571277415 8 -0.053558349609375 1 Unmodified _TLKKKKRK_ ENSG00000175595|ENST00000311895|ERCC4 0.6903765706972694 0.38822285293237185 1 A 1 8 3.9794 0 0 0.38683 0 0 350.3124031859941 604.3574312799436 954.6698344659378 0 0 0 0 0 0 0 0 0 A 0.38683 - 5 + NaN NaN 160211.5 NaN 22979 5993 28973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28980 113.08 NaN 327560 35 0 140760 0.412 + 32613 WLKKILLL 8 79 513.8579556866596 1025.701358440119 2 514.3582153320312 MULTI HCD FTMS 0 0 0 28979 250908.109375 1 0 0 1 Unmodified _WLKKILLL_ ENST00000433031.1_1_7:57216973-57217525:-|nuORF 0 0.5419923896992614 1 Q 1 8 3.9794 0 0 0.38797 0 0 571.4412093696097 323.17099939517817 894.612208764788 0 0 0 0 0 0 0 0 0 Q 0.38797 - 6 + NaN NaN 196846.2 NaN 22980 5998 28979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28983 113.1 NaN 160890 35 0 14061 0.411 + 30366 VLILVLKRF 9 80 550.8794412571284 NaN 0 550.87939453125 PEAK HCD FTMS 0 0 0 28982 33440.875 0.4860542622543147 5 -0.03641510009765625 1 Unmodified _VLILVLKRF_ ENSG00000223443|ENST00000333796|USP17L2;ENSG00000223569|ENST00000456464|USP17L15;ENSG00000225327|ENST00000530484|USP17L3;ENSG00000226430|ENST00000530447|USP17L7;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000227551|ENST00000415041|USP17L12;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000230549|ENST00000529559|USP17L1;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000236125|ENST00000526929|USP17L4;ENSG00000237038|ENST00000527080|USP17L8;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000249811|ENST00000506414|USP17L21;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000250844|ENST00000504209|USP17L18;nc|ENSG00000205946|Q6QN14|USP17L6P 0.5247636613948944 0.2927039108006614 1 A 1 9 5.4846 0 0 0.49871 0 0 157.1831337562607 868.5167330377561 1025.6998667940168 0 0 0 0 0 0 0 0 0 A 0.49871 - 4 + NaN NaN 143114.3 NaN 22981 6000 28982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28986 113.11 NaN 288770 35 0 84295 0.327 -1 0 47 476.3270529972666 950.6395530613332 2 476.3266906738281 MULTI HCD FTMS 0 0 0 28985 105302 0.028057670073246315 102 -0.6907501220703125 1 NaN NaN 1 W 1 -1 3.9794 0 0 0.4186 0 0 130.19619800589516 631.3545626275999 761.550760633495 0 0 0 0 0 0 0 0 0 W 0.4186 - 4 + NaN NaN 124158.1 NaN 22982 6002 28985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28987 113.11 NaN 233960 35 0 46133 0.261 + 28198 TKRRLLLI 8 58 506.85294333642577 NaN 0 506.85296630859375 PEAK HCD FTMS 0 0 0 28985 109342.703125 0.626361160367088 10 -0.07257843017578125 2 Unmodified _TKRRLLLI_ nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 0.7936320650641473 0.38822285293237185 1 Q 1 8 2.4743 0 0 0.24457 0 0 685.5197771984391 195.09493433170158 880.6147115301407 0 0 0 0 0 0 0 0 0 Q 0.24457 - 7 + NaN NaN 112377.2 NaN 22983 6002 28985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28990 113.13 NaN 269970 35 0 56903 0.411 + -1 RINNCCECCTS 11 82 491.8477493700684 NaN 0 491.8475036621094 PEAK HCD FTMS 0 0 0 28989 75831.6328125 0.592098287429132 6 -0.0431365966796875 1 4 Carbamidomethyl (C) _RINNC(Carbamidomethyl (C))C(Carbamidomethyl (C))EC(Carbamidomethyl (C))C(Carbamidomethyl (C))TS_ REV__ENSG00000205359|ENST00000506729|SLCO6A1;REV__nc|ENSG00000205359|Q86UG4-2|SLCO6A1;REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 0.08335046087909445 0.3418837022149213 1 A 1 -1 5.7133 0 0 0.582 0 0 171.1981154442679 736.4348848932249 907.6330003374928 0 0 0 0 0 0.2614393726401688 0 0 0 A 0.582 - 8 + NaN NaN 165658.7 NaN 22984 6004 28989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28993 113.14 NaN 299650 35 0 35082 0.411 -1 0 90 462.8268310576703 923.6391091821406 2 462.8266906738281 MULTI HCD FTMS 0 0 0 28992 79032.59375 0.23640471649770264 14 -0.09613800048828125 1 NaN NaN 1 TK 2 -1 6.9948 0 0 0.75731 0 0 360.28548476983434 331.18988977603755 691.4753745458719 0 0 0 0 0 0 0 0 0.3807196863200844 TK 0.75731 - 16 + NaN NaN 169349.4 NaN 22985 6006 28992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28995 113.15 NaN 279910 35 0 36740 0.327 -1 0 56 462.8268310576703 923.6391091821406 2 462.82684326171875 MULTI HCD FTMS 0 0 0 28994 64897.18359375 0.19412244443742335 15 -0.1024932861328125 1 NaN NaN 1 Q 1 -1 3.9794 0 0 0.43084 0 0 333.2883534221781 459.27826868228755 792.5666221044656 0 0 0 0 0 0 0 0 0 Q 0.43084 - 6 + NaN NaN 122952.9 NaN 22986 6007 28994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 28996 113.15 NaN 265100 35 0 76411 0.261 + 30391 VLLLLVLSL 9 49 491.8477493700684 NaN 0 491.8476257324219 PEAK HCD FTMS 0 0 0 28994 27058.958984375 0.21127809965371844 9 -0.06182861328125 2 Unmodified _VLLLLVLSL_ ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF 0.5247636613948944 0.2927039108006614 1 A 1 9 1.5938 0 0 0.16235 0 0 760.6798757159197 146.94367395572502 907.6235496716447 0 0 0 0 0 0 0 0 0 A 0.16235 - 2 + NaN NaN 125803.9 NaN 22987 6007 28994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29000 113.17 NaN 209260 35 0 19799 0.411 -1 CSCWEELCDWA 11 68 505.8493144149897 NaN 0 505.8492126464844 PEAK HCD FTMS 0 0 0 28999 38614.5390625 0.9674440481277216 -1 0.006256103515625 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))SC(Carbamidomethyl (C))WEELC(Carbamidomethyl (C))DWA_ ENST00000300087.6_1_16:23672541-23676987:+|nuORF 0 0.34212014346876374 1 E 1 -1 3.0989 0 0 0.30692 0 0 376.33447980478564 501.2964642776776 877.6309440824632 0 0 0 0 0 0 0 0 0 E 0.30692 + + 7 + NaN NaN 151561.6 NaN 22988 6010 28999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29009 113.22 NaN 172510 35 0 83635 0.411 + 19232 NKLKIKRK 8 60 514.3583756625375 NaN 0 514.3580932617188 PEAK HCD FTMS 0 0 0 29008 109844.03125 0.48148041355705656 -10 0.06536102294921875 1 Unmodified _NKLKIKRK_ REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 0.6903765706972694 0.38822285293237185 1 D 1 -1 4.6041 0 0 0.44844 0 0 216.22424536628733 692.4085787408811 908.6328241071685 0 0 0 0 0 0 0 0 0 D 0.44844 - 8 + NaN NaN 143599.6 NaN 22989 6018 29008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29011 113.23 NaN 197100 35 0 53184 0.411 + 31220 VVPRRVLL 8 56 476.32678633953276 950.6390197458655 2 476.3265075683594 MULTI HCD FTMS 0 0 0 29010 49129.41015625 0.5709741717304903 -2 0.01348114013671875 1 Unmodified _VVPRRVLL_ ENST00000535977.5_1_16:678431-678971:+|nuORF 0 0.5419923896992614 1 A 1 8 3.0989 0 0 0.32599 0 0 404.311990971071 472.26276575260005 876.574756723671 0 0 0 0 0 0 0 0 0 A 0.32599 - 9 + NaN NaN 135222.9 NaN 22990 6019 29010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29015 113.25 NaN 221080 35 0 59085 0.411 + -1 QQSCCCCRWW 10 70 491.8477493700684 NaN 0 491.8477478027344 PEAK HCD FTMS 0 0 0 29014 47915.61328125 0.3741282036626289 24 -0.16277313232421875 1 3 Carbamidomethyl (C) _QQSC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CRWW_ REV__ENST00000392795.7_1_17:62007703-62009599:-|nuORF 0.12286491777506015 0.3400791336886836 1 Q 1 -1 6.9897 0 0 0.71201 0 0 655.5094503008806 195.0951326959594 850.60458299684 0 0 0 0 0 0 0 0 0 Q 0.71201 + + 8 + NaN NaN 158248.3 NaN 22991 6022 29014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29018 113.26 NaN 147860 35 0 21427 0.411 + 30888 VQRLKKKL 8 60 506.85299344462453 1011.6914339560491 2 506.8533935546875 MULTI HCD FTMS 0 0 0 29017 50712.70703125 0.5685937916209316 14 -0.09474945068359375 1 Unmodified _VQRLKKKL_ REV__ENSG00000170473|ENST00000408946|PYM1;REV__nc|ENSG00000170473|Q9BRP8-2|PYM1 0.6903765706972694 0.5409681170271811 1 M 1 -1 3.9794 0 0 0.39334 0 0 356.5034589578053 521.1214693658811 877.6249283236864 0 0 0 0 0 0 0 0 0 M 0.39334 - 21 + NaN NaN 132520.1 NaN 22992 6024 29017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29020 113.27 NaN 311400 35 0 41265 0.327 -1 0 54 462.8268310576703 923.6391091821406 2 462.826904296875 MULTI HCD FTMS 0 0 0 29019 64770.23046875 0.1937426983592539 33 -0.22138214111328125 1 NaN NaN 1 T 1 -1 3.9794 0 0 0.43084 0 0 360.2890858440531 459.27842127017817 819.5675071142313 0 0 0 0 0 0 0 0 0 T 0.43084 - 6 + NaN NaN 123197.6 NaN 22993 6025 29019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29021 113.28 NaN 145470 35 0 50520 0.261 + 30940 VRLALVVIV 9 47 491.3455785486772 NaN 0 491.3457946777344 PEAK HCD FTMS 0 0 0 29019 42290.11328125 0.6035761976781682 14 -0.09464263916015625 2 Unmodified _VRLALVVIV_ ENSG00000010319|ENST00000231721|SEMA3G 0 0.29524684227089293 1 Q 1 9 6.9897 0 0 0.71274 0 0 654.5042541659108 195.0948885553344 849.5991427212451 0 0 0 0 0 0 0 0 0 Q 0.71274 - 1 + NaN NaN 113605.1 NaN 22994 6025 29019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29034 113.35 NaN 115310 35 0 34365 0.412 + 31221 VVPRRVLL 8 50 476.32678633953276 950.6390197458655 2 476.32647705078125 MULTI HCD FTMS 0 0 0 29033 43137.97265625 0.5013426403695891 16 -0.10646820068359375 1 Unmodified _VVPRRVLL_ ENST00000535977.5_1_16:678431-678971:+|nuORF 0 0.5419923896992614 1 A 1 8 4.6041 0 0 0.48432 0 0 404.3121287319968 472.26059900455317 876.57272773655 0 0 0 0 0 0 0 0 0 A 0.48432 - 6 + NaN NaN 112624.8 NaN 22995 6037 29033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29041 113.39 NaN 50555 35 0 13900 0.411 -1 0 46 633.397610696429 632.3903342298289 1 633.3973388671875 MULTI HCD FTMS 0 0 0 29040 87573.3984375 0.6583356962654553 16 -0.1078948974609375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99323.2 NaN 22996 6043 29040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29043 113.4 NaN 112110 35 0 40964 0.411 + 30941 VRLALVVIV 9 43 491.3455785486772 NaN 0 491.3455810546875 PEAK HCD FTMS 0 0 0 29042 26568.25 0.3791894149659985 33 -0.22339630126953125 1 Unmodified _VRLALVVIV_ ENSG00000010319|ENST00000231721|SEMA3G 0 0.29524684227089293 1 Q 1 9 4.6041 0 0 0.46948 0 0 654.5045898592701 195.09511743717033 849.5997072964404 0 0 0 0 0 0 0 0 0 Q 0.46948 - 2 + NaN NaN 121115.1 NaN 22997 6044 29042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29055 113.47 NaN 84281 35 0 16624 0.411 + 30311 VKRVRLVI 8 46 491.8477493700684 NaN 0 491.847412109375 PEAK HCD FTMS 0 0 0 29054 13746.337890625 0.10733229421007 56 -0.38014984130859375 1 Unmodified _VKRVRLVI_ REV__ENSG00000164049|ENST00000296438|FBXW12;REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12;REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12 0 0.38822285293237185 1 Q 1 -1 2.7642 0 0 0.28158 0 0 655.509541853615 195.0949648492797 850.6045067028947 0 0 0 0 0 0 0 0 0 Q 0.28158 - 5 + NaN NaN 121502.8 NaN 22998 6055 29054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29058 113.48 NaN 88061 35 0 20737 0.412 + 31222 VVPRRVLL 8 44 476.32678633953276 950.6390197458655 2 476.3267517089844 MULTI HCD FTMS 0 0 0 29057 34326.125 0.3989327518539106 36 -0.243682861328125 1 Unmodified _VVPRRVLL_ ENST00000535977.5_1_16:678431-678971:+|nuORF 0 0.5419923896992614 1 T 1 8 4.6041 0 0 0.48432 0 0 391.32232160309053 455.2497895876434 846.572111190734 0 0 0 0 0 0 0 0 0 T 0.48432 - 6 + NaN NaN 103815.7 NaN 22999 6057 29057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29066 113.53 NaN 109990 35 0 48571 0.327 -1 0 28 630.4427658397101 629.43548937311 1 630.442138671875 MULTI HCD FTMS 0 0 0 29065 120054.9140625 0.9369198143991384 2 -0.0159759521484375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100939.1 NaN 23000 6064 29065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29067 113.54 NaN 39505 35 0 13411 0.261 -1 0 22 633.397610696429 632.3903342298289 1 633.3967895507812 MULTI HCD FTMS 0 0 0 29065 84146.0859375 0.6325707699149368 37 -0.2498779296875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88619.5 NaN 23001 6064 29065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29073 113.57 NaN 55286 35 0 9387.2 0.411 -1 AQWSCRCCCGW 11 42 491.8476452932879 NaN 0 491.84771728515625 PEAK HCD FTMS 0 0 0 29072 4743.67138671875 0.26186885143030764 3 -0.02152252197265625 1 3 Carbamidomethyl (C) _AQWSC(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))CGW_ ENST00000474359.6_1_12:58016417-58018310:+|nuORF 0.0732635311334299 0.34191231592972665 1 {M(Oxidation (M))|F} 1 -1 2.7642 0 0 0.28158 0 0 508.4414626063039 323.1495455377563 831.5910081440602 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.28158 - 1 + NaN NaN 98850.9 NaN 23002 6069 29072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29076 113.58 NaN 146460 35 0 41014 0.411 -1 WMTHWDKLGL 10 52 434.88212990970203 NaN 0 434.8821105957031 PEAK HCD FTMS 0 0 0 29075 46105.34375 0.5524611572367787 -685 4.903495788574219 1 Oxidation (M) _WM(Oxidation (M))THWDKLGL_ ENST00000524023.1_1_7:18705971-18706013:+|nuORF 0.6976657623105312 0.3395871838311286 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 121813.3 NaN 23003 6071 29075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29083 113.62 NaN 63617 35 0 11206 0.411 -1 MWYCSYCQGLM 11 43 491.8476518585626 NaN 0 491.84765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))WYC(Carbamidomethyl (C))SYCQGLM(Oxidation (M))_ ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-2|GPC3;nc|ENSG00000147257|P51654-3|GPC3 0.09484139111097674 0.34185110575506755 1 D 1 -1 6.9897 0 0 0.71201 0 0 646.5232323286502 217.10773645572502 863.6309687843752 0 0 0 0 0 0 0 0 0 D 0.71201 - 3 + NaN NaN 107194.5 NaN 23004 6077 29082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29090 113.66 NaN 375280 35 0 107550 0.411 + 21229 PQVRRKLELE 10 46 634.3777220755774 1266.7408912179546 2 634.3778076171875 MULTI HCD FTMS 0 0 0 29089 81069.09375 0.510667687000342 -1 0.00644683837890625 1 Unmodified _PQVRRKLELE_ ENSG00000249115|ENST00000203166|HAUS5;ENST00000585968.5_1_19:36103696-36110661:+|nuORF;nc|ENSG00000249115|O94927-2|HAUS5 0.4007161486938917 0.47318265037741464 1 R 1 9 1.5938 0 0 0.12582 0 0 800.4111315517422 307.20636926822505 1107.6175008199673 0 0 0 0 0 0 0 0 0 + R 0.12582 + + 3 + NaN NaN 193908.5 NaN 23005 6083 29089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29093 113.67 NaN 349570 35 0 59104 0.411 + 26193 SPRKKRPRQT 10 48 627.3823698662841 1252.750186799368 2 627.3809204101562 MULTI HCD FTMS 0 0 0 29092 81178.59375 0.9270651075061167 1 -0.00699615478515625 1 Unmodified _SPRKKRPRQT_ ENSG00000107447|ENST00000371174|DNTT;nc|ENSG00000107447|P04053-2|DNTT 5.731851221503515 0.44496410492002586 1 {M(Oxidation (M))|F} 1 10 4.7763 0 0 0.38126 0 0 449.3230760589368 653.3449801080686 1102.6680561670055 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 0.38126 - 6 + NaN NaN 189782.6 NaN 23006 6085 29092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29095 113.68 NaN 91825 35 0 36734 0.411 -1 LKLIKDIV 8 48 492.32688231131374 NaN 0 492.32647705078125 PEAK HCD FTMS 0 0 0 29094 10820.68359375 0.3202561915422431 1 -0.00736236572265625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LKLIKDIV_ ENST00000518193.1_1_8:63768847-63768886:-|nuORF 0.6014990680409731 0.38822285293237185 1 P 1 -1 3.0989 0 0 0.31537 0 0 735.6126441618869 146.95697961978752 882.5696237816744 0 0 0 0 0 0 0 0 0 P 0.31537 - 1 + NaN NaN 113323 NaN 23007 6086 29094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29109 113.77 NaN 69123 35 0 30562 0.411 -1 0 41 630.442958523533 629.4356820569329 1 630.4423828125 MULTI HCD FTMS 0 0 0 29108 65165.453125 0.6514065896168271 4 -0.02802276611328125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 109013.9 NaN 23008 6099 29108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29112 113.78 NaN 150020 35 0 40635 0.411 + 32656 WNPRVKRVGR 10 39 634.3777220755774 1266.7408912179546 2 634.3775634765625 MULTI HCD FTMS 0 0 0 29111 72568.9453125 0.45712384012913293 17 -0.11663055419921875 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 1.4819007175156935 0.4674597685733628 1 H 1 10 7.7642 0 0 0.61293 0 0 447.3356565258162 679.3129366510374 1126.6485931768536 0 0 0 0 0 0.5 0 0 0 H 0.61293 - 1 + NaN NaN 128967.1 NaN 23009 6101 29111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29125 113.86 NaN 116730 35 0 5934.1 0.411 + 25713 SKEKRKHKDTY 11 71 473.9282251836546 NaN 0 473.9284362792969 PEAK HCD FTMS 0 0 0 29124 23212.208984375 0.35927006874729595 22 -0.15428924560546875 1 Unmodified _SKEKRKHKDTY_ ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6 1.1097533296519684 0.33897209286470975 1 K 1 10 2.7642 0 0 0.29225 0 0 491.5807887070544 323.1492098443969 814.7299985514513 0 0 0 0 0 0 0 0 0 + K 0.29225 + + 6 + NaN NaN 122213.5 NaN 23010 6113 29124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29142 113.97 NaN 26266 35 0 5320.7 0.411 + 10722 IQLIRKKAKN 10 22 606.398614129962 NaN 0 606.0540771484375 PEAK HCD FTMS 0 0 0 29141 12784.62890625 1 0 0 1 Unmodified _IQLIRKKAKN_ ENSG00000007968|ENST00000361729|E2F2 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92518.7 NaN 23011 6129 29141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29144 113.98 NaN 176150 35 0 53269 0.327 + 32657 WNPRVKRVGR 10 33 634.3775900813291 1266.7406272294581 2 634.3778076171875 MULTI HCD FTMS 0 0 0 29143 66741.6796875 0.6369422928725146 1 -0.0092926025390625 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 1.4819007175156935 0.4674597685733628 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112167.2 NaN 23012 6130 29143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29145 113.99 NaN 154290 35 0 19415 0.261 -1 0 34 628.1926610080558 627.1853845414557 1 627.8846435546875 MULTI HCD FTMS 0 0 0 29143 37852.0390625 0.464376359985006 18 -0.125213623046875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105484.4 NaN 23013 6130 29143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29148 114 NaN 24917 35 0 2560.1 0.411 + -1 RRMMMETMM 9 29 624.7545776367188 NaN 0 624.7545776367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _RRM(Oxidation (M))M(Oxidation (M))METMM_ REV__ENST00000531819.5_1_1:52237836-52249732:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92350.1 NaN 23014 6132 29147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29153 114.02 NaN 37950 35 0 4235.8 0.411 + 34744 YPWKKEFRSIK 11 48 494.6136626865231 NaN 0 494.61297607421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YPWKKEFRSIK_ ENSG00000158480|ENST00000289431|SPATA2 0.09484139111097674 0.34185110575506755 1 Q 1 11 1.5938 0 0 0.16144 0 0 661.0411853810557 195.09505640201408 856.1362417830697 0 0 0 0 0 0 0 0 0 Q 0.16144 - 2 + NaN NaN 95392.3 NaN 23015 6136 29152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29165 114.1 NaN 28272 35 0 8845 0.411 + 23059 REASHSLLEKL 11 25 641.859619140625 NaN 0 641.859619140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _REASHSLLEKL_ REV__ENSG00000160293|ENST00000371850|VAV2;REV__nc|ENSG00000160293|P52735-2|VAV2;REV__nc|ENSG00000160293|P52735-3|VAV2 4.897010918128616 0.3282287337590871 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95190.9 NaN 23016 6147 29164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29168 114.11 NaN 21082 35 0 2930.5 0.411 -1 0 31 575.3556853312595 574.3484088646594 1 575.4432983398438 MULTI HCD FTMS 0 0 0 29167 18130.666015625 0.08923383586274496 139 -1.0424270629882812 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92873.5 NaN 23017 6149 29167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29170 114.12 NaN 39606 35 0 21231 0.411 + 30388 VLLLLLLFFI 10 29 602.4111550086767 NaN 0 602.4118041992188 PEAK HCD FTMS 0 0 0 29169 24025.88671875 0.499720550631034 -2 0.014373779296875 1 Unmodified _VLLLLLLFFI_ ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR;nc|ENSG00000110148|P32239-3|CCKBR 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98218 NaN 23018 6150 29169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29174 114.14 NaN 35768 35 0 4526.5 0.411 + 10276 IKKIHIFY 8 38 531.3294658450744 NaN 0 531.329833984375 PEAK HCD FTMS 0 0 0 29173 26173.283203125 0.27383933313002196 130 -0.9688568115234375 1 Unmodified _IKKIHIFY_ REV__ENSG00000198169|ENST00000292562|ZNF251 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92341.5 NaN 23019 6153 29173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29179 114.17 NaN 32274 35 0 3844.4 0.411 + 10239 IIFFKVFYQIY 11 38 494.2793605104954 1479.8162521316863 3 494.27923583984375 MULTI HCD FTMS 0 0 0 29178 19448.951171875 0.7190629177155552 2 -0.01457977294921875 1 Unmodified _IIFFKVFYQIY_ REV__ENSG00000058668|ENST00000357681|ATP2B4;REV__ENSG00000070961|ENST00000428670|ATP2B1;REV__nc|ENSG00000058668|P23634-2|ATP2B4;REV__nc|ENSG00000058668|P23634-3|ATP2B4;REV__nc|ENSG00000058668|P23634-4|ATP2B4;REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000058668|P23634-7|ATP2B4;REV__nc|ENSG00000058668|P23634-8|ATP2B4;REV__nc|ENSG00000058668|P23634|ATP2B4;REV__nc|ENSG00000070961|P20020-1|ATP2B1;REV__nc|ENSG00000070961|P20020-2|ATP2B1;REV__nc|ENSG00000070961|P20020-4|ATP2B1;REV__nc|ENSG00000070961|P20020-5|ATP2B1;REV__nc|ENSG00000070961|P20020-6|ATP2B1 0.09484139111097674 0.41850472438158626 1 P 1 -1 4.6041 0 0 0.31113 0 0 1078.6195491060987 301.11664758853755 1379.7361966946362 0 0 0 0 0 0 0 0 0 P 0.31113 - 8 + NaN NaN 88819.3 NaN 23020 6157 29178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29182 114.18 NaN 34972 35 0 7714 0.412 -1 0 37 643.4634196607611 642.4561431941611 1 643.4630737304688 MULTI HCD FTMS 0 0 0 29181 48565.09765625 0.011777486265639195 193 -1.4418258666992188 1 NaN NaN 1 M 1 -1 1.5938 0 0 0.24808 0 0 82.09165452404234 426.30011926822505 508.3917737922674 0 0 0 0 0 0 0 0 0 M 0.24808 - 2 + NaN NaN 91440.2 NaN 23021 6159 29181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29190 114.23 NaN 19704 35 0 4682.5 0.411 -1 0 26 646.437568149007 645.430291682407 1 646.4381713867188 MULTI HCD FTMS 0 0 0 29189 8239.314453125 0.1396312132814801 -8 0.05489349365234375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89250.6 NaN 23022 6166 29189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29192 114.24 NaN 27022 35 0 5900.9 0.411 -1 0 30 646.437568149007 645.430291682407 1 646.4376220703125 MULTI HCD FTMS 0 0 0 29191 10919.3427734375 0.18504950725762873 -7 0.04779052734375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86646 NaN 23023 6167 29191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29203 114.31 NaN 82624 35 0 15967 0.411 + 22518 QRVPRIIEEK 10 30 634.3772798989916 1266.740006864783 2 634.8777465820312 MULTI HCD FTMS 0 0 0 29202 13926.0966796875 0.5445197845216769 1 -0.0071258544921875 1 Unmodified _QRVPRIIEEK_ REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant 1.4819007175156935 0.4674597685733628 1 T 1 -1 3.4949 0 0 0.27589 0 0 754.3799127259143 408.29099451236567 1162.67090723828 0 0 0 0 0 0 0 0 0 T 0.27589 - 2 + NaN NaN 109806.9 NaN 23024 6177 29202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29206 114.32 NaN 52647 35 0 10191 0.411 + 32658 WNPRVKRVGR 10 35 634.3772798989916 1266.740006864783 2 634.3784790039062 MULTI HCD FTMS 0 0 0 29205 10344.4423828125 0.42683807334192647 3 -0.02077484130859375 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98303.4 NaN 23025 6179 29205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29211 114.35 NaN 37116 35 0 4164.6 0.411 -1 MRIRATPRRPW 11 48 494.6137929150307 NaN 0 494.614013671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MRIRATPRRPW_ ENST00000224949.8_1_10:3207443-3207503:-|nuORF 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91575.1 NaN 23026 6183 29210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29213 114.36 NaN 24958 35 0 3341.3 0.411 -1 0 23 643.4634196607611 642.4561431941611 1 643.46337890625 MULTI HCD FTMS 0 0 0 29212 26243.791015625 0.006364362539381232 218 -1.6802902221679688 1 NaN NaN 1 M 1 -1 5.4846 0 0 0.85368 0 0 82.09147141857359 426.3038424127563 508.3953138313299 0 0 0 0 0 0 0 0 0 M 0.85368 - 2 + NaN NaN 85828.3 NaN 23027 6184 29212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29218 114.38 NaN 55623 35 0 13186 0.412 -1 0 43 508.2118565438519 507.20458007725193 1 508.21185302734375 MULTI HCD FTMS 0 0 0 29217 18612.544921875 0.4074978377813931 -507 3.69696044921875 1 NaN NaN 1 {I|L} 1 -1 5.4846 0 0 1.0813 0 0 112.12546128018006 278.9725741022094 391.09803538238947 0 0 0 0 0 0 0 0 0 {I|L} 1.0813 - 2 + NaN NaN 82031.7 NaN 23028 6188 29217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29223 114.41 NaN 88886 35 0 21676 0.411 + 22752 QYHGLLFPW 9 34 580.797119140625 NaN 0 580.797119140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _QYHGLLFPW_ REV__ENSG00000167037|ENST00000400358|SGSM1;REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF;REV__ENST00000480523.1_1_22:25240737-25320238:+|nuORF;REV__nc|ENSG00000167037|Q2NKQ1-3|SGSM1;REV__nc|ENSG00000167037|Q2NKQ1|SGSM1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 127165.5 NaN 23029 6192 29222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29226 114.43 NaN 39561 35 0 12008 0.327 -1 0 27 569.389885511561 568.382609044961 1 569.3897094726562 MULTI HCD FTMS 0 0 0 29225 28571.8984375 0.22822709838238592 -17 0.11949920654296875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83854.9 NaN 23030 6194 29225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29227 114.43 NaN 56270 35 0 8387.6 0.264 + -1 QFYAQCMSC 9 45 404.1490714017404 NaN 0 404.1490173339844 PEAK HCD FTMS 0 0 0 29225 10945.884765625 0.6076595800970882 -25 0.1720123291015625 2 2 Carbamidomethyl (C),Oxidation (M) _QFYAQC(Carbamidomethyl (C))M(Oxidation (M))SC(Carbamidomethyl (C))_ REV__ENSG00000133710|ENST00000256084|SPINK5;REV__nc|ENSG00000133710|Q9NQ38-2|SPINK5;REV__nc|ENSG00000133710|Q9NQ38-3|SPINK5 0.26902006276349055 0.29394320858957723 1 C 1 -1 1.2591 0 0 0.15616 0 0 559.2566103554356 141.00074182681877 700.2573521822543 0 0 0 0 0 0 0 0 0 C 0.15616 + + 1 + NaN NaN 88142.1 NaN 23031 6194 29225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29230 114.44 NaN 27359 35 0 2072.4 0.411 -1 0 32 643.4634196607611 642.4561431941611 1 643.4627075195312 MULTI HCD FTMS 0 0 0 29229 18444.544921875 0.0044729730810165865 230 -1.7907257080078125 1 NaN NaN 1 M 1 -1 4.6041 0 0 0.71664 0 0 64.08066819591734 444.31223474674067 508.392902942658 0 0 0 0 0 0 0 0 0 M 0.71664 - 3 + NaN NaN 98784.9 NaN 23032 6196 29229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29237 114.48 NaN 44812 35 0 10885 0.327 + 32659 WNPRVKRVGR 10 17 634.3776442309087 1266.7407355286173 2 634.3787231445312 MULTI HCD FTMS 0 0 0 29236 25101.05078125 0.7065212826008606 -9 0.065093994140625 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 103201.1 NaN 23033 6202 29236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29238 114.49 NaN 44538 35 0 9081.4 0.263 + 34130 YNVKRYLLYLH 11 38 494.6137052741039 NaN 0 494.6143493652344 PEAK HCD FTMS 0 0 0 29236 11041.966796875 0.7352383030710364 -2 0.013336181640625 2 Unmodified _YNVKRYLLYLH_ ENST00000315183.11_2_16:24835199-24835373:+|nuORF 0.09484139111097674 0.34185110575506755 1 {M(Oxidation (M))|F} 1 11 3.4949 0 0 0.35401 0 0 512.0406602046547 325.07737146549067 837.1180316701455 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.35401 - 1 + NaN NaN 103441.6 NaN 23034 6202 29236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29240 114.49 NaN 191540 35 0 57374 0.411 -1 0 25 599.4372080970378 598.4299316304377 1 599.7276000976562 MULTI HCD FTMS 0 0 0 29239 34846.95703125 0.011396643985991533 210 -1.6439666748046875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 152729.5 NaN 23035 6203 29239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29243 114.51 NaN 108930 35 0 13124 0.411 + 2711 DVLENPSKKRP 11 32 641.8592997803239 1281.7040466274477 2 642.3602905273438 MULTI HCD FTMS 0 0 0 29242 29095.439453125 0.7881479608966715 -7 0.0503387451171875 1 Unmodified _DVLENPSKKRP_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 4.897010918128616 0.3974440401582579 1 M 1 -1 9.6041 0 0 0.74932 0 0 703.3286936995165 444.31147180728755 1147.6401655068041 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 5 + NaN NaN 121489.6 NaN 23036 6205 29242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29245 114.51 NaN 101510 35 0 39233 0.411 -1 0 36 454.33742971853786 453.3301532519379 1 455.3406677246094 MULTI HCD FTMS 0 0 0 29244 59526.84765625 0.8792590529125763 -1 0.00714874267578125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 120782.1 NaN 23037 6206 29244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29247 114.52 NaN 51399 35 0 24527 0.326 -1 0 21 572.4371353806694 571.4298589140693 1 572.4375610351562 MULTI HCD FTMS 0 0 0 29246 29527.96484375 0.011066999915295823 190 -1.4684677124023438 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93847.8 NaN 23038 6207 29246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29248 114.53 NaN 32132 35 0 19061 0.261 + -1 KLLLWPCKR 9 10 607.3679318980321 NaN 0 607.3681030273438 PEAK HCD FTMS 0 0 0 29246 13515.86328125 0.5192046045733917 -2 0.0146026611328125 2 Carbamidomethyl (C) _KLLLWPC(Carbamidomethyl (C))KR_ REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106674.1 NaN 23039 6207 29246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29252 114.54 NaN 56221 35 0 25114 0.411 + 21169 PPRRKRRQ 8 41 547.3453564152411 NaN 0 547.345703125 PEAK HCD FTMS 0 0 0 29251 44329.515625 0.9713721270824399 4 -0.0275726318359375 1 Unmodified _PPRRKRRQ_ ENSG00000196569|ENST00000421865|LAMA2 0.6903765706972694 0.38822285293237185 1 Y 1 8 2.4743 0 0 0.22644 0 0 555.4142102896634 371.16855798892817 926.5827682785916 0 0 0 0 0 0 0 0 0 Y 0.22644 - 1 + NaN NaN 98212 NaN 23040 6210 29251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29256 114.56 NaN 34203 35 0 5829.3 0.411 -1 MMCSVQRE 8 30 549.7228393554688 NaN 0 549.7228393554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))MC(Carbamidomethyl (C))SVQRE_ ENST00000472310.5_1_4:110585526-110603779:+|nuORF 2.577480529830294 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91016.1 NaN 23041 6213 29255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29258 114.57 NaN 32506 35 0 3477.5 0.411 + 22083 QHPKEFPV 8 38 491.26173359587176 NaN 0 491.62109375 PEAK HCD FTMS 0 0 0 29257 20036.916015625 0.9120343736884212 8 -0.06049346923828125 1 Unmodified _QHPKEFPV_ ENST00000487863.5_1_19:53056575-53056806:+|nuORF 2.577480529830294 0.38822285293237185 1 P 1 7 4.6041 0 0 0.46956 0 0 733.4821636255342 146.94991480045158 880.4320784259858 0 0 0 0 0 0 0 0 0 + P 0.46956 + + 3 + NaN NaN 102072.3 NaN 23042 6214 29257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29260 114.58 NaN 64496 35 0 9298.2 0.411 + 14441 LERPLELRVK 10 33 626.8900146484375 NaN 0 626.8900146484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LERPLELRVK_ ENSG00000175065|ENST00000308128|DSG4;nc|ENSG00000175065|Q86SJ6-2|DSG4 1.4819007175156935 0.33891598740166873 1 M 1 10 2.2185 0 0 0.17723 0 0 661.4136537091812 456.2743319147094 1117.6879856238907 0 0 0 0 0 0 0 0 0 M 0.17723 - 1 + NaN NaN 102100 NaN 23043 6215 29259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29262 114.59 NaN 107590 35 0 12964 0.411 + 2712 DVLENPSKKRP 11 30 641.8592997803239 1281.7040466274477 2 642.3614501953125 MULTI HCD FTMS 0 0 0 29261 23728.478515625 0.6427657498488712 4 -0.03113555908203125 1 Unmodified _DVLENPSKKRP_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 4.897010918128616 0.3974440401582579 1 M 1 -1 9.6041 0 0 0.74932 0 0 703.3295158276796 444.3121762181009 1147.6416920457805 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 4 + NaN NaN 133246 NaN 23044 6216 29261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29265 114.6 NaN 62137 35 0 4904.1 0.411 + -1 FGMECECRY 9 41 404.1490714017404 NaN 0 404.1488952636719 PEAK HCD FTMS 0 0 0 29264 5811.1416015625 0.3226048822092237 -1 0.00695037841796875 1 Carbamidomethyl (C),Oxidation (M) _FGM(Oxidation (M))EC(Carbamidomethyl (C))ECRY_ REV__ENSG00000138829|ENST00000262464|FBN2;REV__ENSG00000142449|ENST00000600128|FBN3;REV__nc|ENSG00000138829|P35556-2|FBN2 1.0714618166137932 0.2900546878344058 1 A 1 -1 3.9794 0 0 0.49355 0 0 170.89737268453706 561.3319185846311 732.2292912691682 0 0 0 0 0 0 0 0 0 A 0.49355 - 2 + NaN NaN 98162.4 NaN 23045 6218 29264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29267 114.61 NaN 60047 35 0 14669 0.326 + 32660 WNPRVKRVGR 10 18 634.3776442309087 1266.7407355286173 2 634.8785400390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 0.4007161486938917 0.47318265037741464 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96684.1 NaN 23046 6219 29266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29268 114.61 NaN 28827 35 0 7482.8 0.263 -1 FCCCEGNMCNE 11 17 494.1524963378906 NaN 0 494.1524963378906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 4 Carbamidomethyl (C) _FC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))EGNMC(Carbamidomethyl (C))NE_ ENSG00000121989|ENST00000241416|ACVR2A 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86085.2 NaN 23047 6219 29266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29271 114.63 NaN 69189 35 0 17590 0.411 -1 0 24 563.3408230873438 562.3335466207437 1 563.3408203125 MULTI HCD FTMS 0 0 0 29270 24005.056640625 0.48299639432372427 11 -0.08065032958984375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103150.6 NaN 23048 6221 29270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29278 114.67 NaN 16746 35 0 2197.3 0.411 + 20466 PAVFYLKLVK 10 23 589.3707784480846 NaN 0 589.3704223632812 PEAK HCD FTMS 0 0 0 29277 12495.8046875 0.44830715987200737 14 -0.10524749755859375 1 Unmodified _PAVFYLKLVK_ ENSG00000139209|ENST00000266579|SLC38A4 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84836 NaN 23049 6227 29277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29286 114.72 NaN 16920 35 0 2347.9 0.411 + 26518 SVLALFLYLVK 11 27 633.3967098753801 NaN 0 633.3955688476562 PEAK HCD FTMS 0 0 0 29285 8484.919921875 0.3900424709578878 22 -0.17140960693359375 1 Unmodified _SVLALFLYLVK_ REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98679.6 NaN 23050 6234 29285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29288 114.73 NaN 17900 35 0 2315.4 0.411 + 16633 LWALIPLRRQ 10 31 633.3967098753801 NaN 0 633.3973388671875 PEAK HCD FTMS 0 0 0 29287 5373.02490234375 0.24699206695227244 23 -0.1806793212890625 1 Unmodified _LWALIPLRRQ_ REV__ENSG00000181045|ENST00000361193|SLC26A11;REV__SLC26A11-OAF|1|fusion 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95563.5 NaN 23051 6235 29287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29291 114.74 NaN 27573 35 0 4482.4 0.411 -1 FCRCACFC 8 26 533.6883544921875 NaN 0 533.6883544921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))RC(Carbamidomethyl (C))ACFC_ ENSG00000111325|ENST00000228922|OGFOD2;ENST00000420319.6_1_12:123459798-123461705:+|nuORF;ENST00000545396.5_1_12:123459798-123462874:+|nuORF;nc|ENSG00000111325|Q6N063-3|OGFOD2 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89487.5 NaN 23052 6237 29290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29295 114.76 NaN 23217 35 0 3309 0.411 -1 0 24 575.4432057790912 NaN 0 575.4431762695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 W 1 -1 2.2185 0 0 0.1931 0 0 555.0771331384573 404.68955408267817 959.7666872211355 0 0 0 0 0 0 0 0 0 W 0.1931 - 1 + NaN NaN 112210.5 NaN 23053 6240 29294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29297 114.77 NaN 25696 35 0 4686.9 0.327 -1 0 24 421.3213631585917 NaN 0 421.32879638671875 PEAK HCD FTMS 0 0 0 29296 1629.6204833984375 0.414936532961745 -1 0.00766754150390625 1 NaN NaN 1 MY 2 -1 7.9588 0 0 0.94677 0 0 429.28642030956775 114.22503076724843 543.5114510768162 0 0 0 0 0 0 0 0 0 MY 0.94677 - 4 + NaN NaN 88461.7 NaN 23054 6241 29296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29298 114.78 NaN 28364 35 0 5399.4 0.261 -1 0 16 528.410748645613 NaN 0 528.4098510742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82833.8 NaN 23055 6241 29296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29299 114.78 NaN 21691 35 0 4423.6 0.261 + 12299 KLPVKPGKRRL 11 20 646.4373535768926 NaN 0 646.4373779296875 PEAK HCD FTMS 0 0 0 29296 2437.27880859375 0.03914874711698839 30 -0.238922119140625 3 Unmodified _KLPVKPGKRRL_ REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83622.6 NaN 23056 6241 29296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29301 114.79 NaN 37537 35 0 8398.2 0.327 + 12257 KLLKIKKIIT 10 24 599.436728492075 NaN 0 599.9147338867188 PEAK HCD FTMS 0 0 0 29300 9143.52734375 1 0 0 1 Unmodified _KLLKIKKIIT_ REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 0 0.34018428902965525 1 M 1 -1 5.4846 0 0 0.45825 0 0 634.4873353027061 428.31110559635005 1062.7984408990562 0 0 0 0 0 0 0 0 0 M 0.45825 - 1 + NaN NaN 84896 NaN 23057 6242 29300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29302 114.79 NaN 33841 35 0 9789.2 0.263 -1 LWRQESCTWC 10 23 456.86419461320844 NaN 0 456.864501953125 PEAK HCD FTMS 0 0 0 29300 2645.3115234375 0.3087686193940915 -3 0.02762603759765625 2 Carbamidomethyl (C) _LWRQESC(Carbamidomethyl (C))TWC_ ENST00000412565.2_3_14:24025103-24025394:-|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111873.9 NaN 23058 6242 29300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29306 114.81 NaN 36010 35 0 4628.1 0.411 + 23136 RFFKRKIM 8 26 563.3399387597767 NaN 0 563.70361328125 PEAK HCD FTMS 0 0 0 29305 1881.45703125 0.3129003600621704 5 -0.03833770751953125 1 Unmodified _RFFKRKIM_ ENSG00000135090|ENST00000392533|TAOK3 0.6903765706972694 0.38822285293237185 1 D 1 8 3.9794 0 0 0.35383 0 0 765.1070187775628 241.51621423892814 1006.6232330164909 0 0 0 0 0 0 0 0 0 D 0.35383 - 2 + NaN NaN 102941.5 NaN 23059 6245 29305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29308 114.82 NaN 28607 35 0 4339 0.411 -1 0 29 421.3218625448835 NaN 0 421.3285217285156 PEAK HCD FTMS 0 0 0 29307 2241.911376953125 0.43475960949384984 -1 0.0076751708984375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95890.5 NaN 23060 6246 29307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29311 114.83 NaN 24030 35 0 1600.8 0.411 + 21264 PRLLRPLLGFL 11 29 647.9193725585938 NaN 0 647.9193725585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PRLLRPLLGFL_ ENSG00000139540|ENST00000454355|SLC39A5 0.35063188157827746 0.3411255017974031 1 {M(Oxidation (M))|F} 1 10 0.48455 0 0 0.037451 0 0 517.7514454084 626.0297335260374 1143.7811789344373 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.037451 + + 1 + NaN NaN 90089.5 NaN 23061 6248 29310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29313 114.84 NaN 26842 35 0 5180.7 0.411 -1 0 26 602.4113466889381 601.4040702223381 1 602.4110107421875 MULTI HCD FTMS 0 0 0 29312 8498.73828125 0.05805095816444649 37 -0.29498291015625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90885.1 NaN 23062 6249 29312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29315 114.85 NaN 35960 35 0 12628 0.411 -1 0 28 481.3373340688311 480.33005760223114 1 481.3367004394531 MULTI HCD FTMS 0 0 0 29314 22287.271484375 0.10869746990785158 44 -0.36258697509765625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97962.9 NaN 23063 6250 29314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29322 114.89 NaN 26257 35 0 5196.4 0.327 -1 SCCETTCCHL 10 23 607.2099337092908 NaN 0 607.21044921875 PEAK HCD FTMS 0 0 0 29321 11842.404296875 0.6717535846624243 -13 0.09639739990234375 1 2 Carbamidomethyl (C) _SC(Carbamidomethyl (C))CETTC(Carbamidomethyl (C))CHL_ KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96117.4 NaN 23064 6256 29321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29323 114.9 NaN 21392 35 0 7048.3 0.261 -1 0 14 569.3898619221741 568.382585455574 1 569.3894653320312 MULTI HCD FTMS 0 0 0 29321 12353.7099609375 0.6386283931837361 -8 0.05925750732421875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82003.7 NaN 23065 6256 29321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29326 114.91 NaN 47364 35 0 10712 0.411 -1 0 26 508.2118565438519 507.20458007725193 1 508.2117614746094 MULTI HCD FTMS 0 0 0 29325 15844.318359375 0.3468910618975646 -437 3.28961181640625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89832.9 NaN 23066 6258 29325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29328 114.92 NaN 32929 35 0 5769.1 0.327 + 32509 WGCWSSWST 9 23 550.2173149460601 NaN 0 550.217041015625 PEAK HCD FTMS 0 0 0 29327 11014.6826171875 0.8782139306612582 -2 0.014923095703125 1 Unmodified _WGCWSSWST_ ENSG00000039537|ENST00000337836|C6 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91020.1 NaN 23067 6259 29327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29329 114.92 NaN 22812 35 0 2383.1 0.261 + 12300 KLPVKPGKRRL 11 25 646.4373569125486 NaN 0 646.437255859375 PEAK HCD FTMS 0 0 0 29327 5216.853515625 0.8762799482275413 3 -0.0250244140625 2 Unmodified _KLPVKPGKRRL_ REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF 0.3070304955306653 0.3412491863730806 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87322.3 NaN 23068 6259 29327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29331 114.93 NaN 87799 35 0 51913 0.411 + 10854 IVLMILLPPL 10 32 561.373003375692 NaN 0 561.7085571289062 PEAK HCD FTMS 0 0 0 29330 2446.7568359375 0.9736322402239587 -1 0.00975799560546875 1 Unmodified _IVLMILLPPL_ REV__ENSG00000170425|ENST00000304222|ADORA2B;REV__ENST00000582124.1_1_17:15877924-15878653:+|nuORF 0.45834013312273997 0.33979201340002624 1 V 1 -1 0.71334 0 0 0.063649 0 0 460.92958721837755 557.6980684869749 1018.6276557053525 0 0 0 0 0 0 0 0 0 V 0.063649 + + 1 + NaN NaN 120416.7 NaN 23069 6260 29330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29335 114.95 NaN 22609 35 0 7351.6 0.326 -1 0 14 572.4369617551237 NaN 0 572.4371948242188 PEAK HCD FTMS 0 0 0 29334 11948.8291015625 0.8212728829215715 4 -0.03176116943359375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83526.8 NaN 23070 6263 29334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29336 114.95 NaN 26862 35 0 9462.2 0.262 -1 MAMNWPQFEEW 11 17 500.8671569824219 NaN 0 500.8671569824219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _M(Oxidation (M))AM(Oxidation (M))NWPQFEEW_ ENSG00000100266|ENST00000263246|PACSIN2;ENSG00000165912|ENST00000298838|PACSIN3;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83070.9 NaN 23071 6263 29334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29338 114.96 NaN 37341 35 0 11793 0.411 -1 0 27 558.3849474865743 557.3776710199743 1 558.385009765625 MULTI HCD FTMS 0 0 0 29337 18946.681640625 0.07519178099435479 51 -0.40654754638671875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94580.6 NaN 23072 6264 29337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29342 114.98 NaN 21788 35 0 2159.9 0.411 -1 WWQEGPMYQ 9 25 620.7582397460938 NaN 0 620.7582397460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _WWQEGPM(Oxidation (M))YQ_ ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1;nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-6|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.G637Sfs*18|1|0.08|ENSG00000138079|chr2:44320488-44320489|-/CTCTGGAAGGCCCACC|frameshift_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93759.3 NaN 23073 6267 29341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29344 114.99 NaN 39425 35 0 5586.5 0.411 + 12258 KLLKIKKIIT 10 31 599.4367153066742 NaN 0 599.8133544921875 PEAK HCD FTMS 0 0 0 29343 10347.056640625 0.830795767494808 3 -0.02362060546875 1 Unmodified _KLLKIKKIIT_ REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 0 0.34018428902965525 1 M 1 -1 3.0989 0 0 0.25892 0 0 634.4909161995768 428.3100985162719 1062.8010147158486 0 0 0 0 0 0 0 0 0 M 0.25892 - 1 + NaN NaN 106689.1 NaN 23074 6268 29343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29346 115 NaN 19548 35 0 1945 0.411 -1 0 29 624.2350141452912 623.2277376786911 1 625.2366943359375 MULTI HCD FTMS 0 0 0 29345 2570.556884765625 0.39781973345891475 8 -0.06508636474609375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92902.4 NaN 23075 6269 29345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29348 115 NaN 36702 35 0 9233.8 0.411 -1 MLRRVLPKV 9 25 564.3591124722805 NaN 0 564.359130859375 PEAK HCD FTMS 0 0 0 29347 10275.7802734375 0.7496540408682035 9 -0.07215118408203125 1 Oxidation (M) _M(Oxidation (M))LRRVLPKV_ PPP4R4|p.T89M|2|0.26|ENSG00000119698|chr14:94208538-94208538|C/T|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98531.6 NaN 23076 6270 29347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29350 115.01 NaN 32238 35 0 4260.6 0.327 + 23675 RQHILLVSK 9 14 547.3458046762623 NaN 0 547.332763671875 PEAK HCD FTMS 0 0 0 29349 2401.972900390625 0.5016052827599076 -1 0.00789642333984375 1 Unmodified _RQHILLVSK_ REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83788.4 NaN 23077 6271 29349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29351 115.02 NaN 33816 35 0 9741 0.261 -1 0 20 494.1068115234375 NaN 0 494.1068115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84346.7 NaN 23078 6271 29349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29354 115.03 NaN 44352 35 0 16724 0.411 -1 0 32 481.33731631288794 480.33003984628795 1 481.3370666503906 MULTI HCD FTMS 0 0 0 29353 24450.6953125 0.5409334137266765 11 -0.092559814453125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98744 NaN 23079 6273 29353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29357 115.04 NaN 26481 35 0 4633.2 0.327 -1 0 22 421.328878913786 NaN 0 421.3291320800781 PEAK HCD FTMS 0 0 0 29356 9026.0517578125 0.4033267525166366 136 -1.0785064697265625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83961.9 NaN 23080 6275 29356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29358 115.05 NaN 21317 35 0 4462.1 0.261 + 26315 SRWPAMKFR 9 22 589.8175659179688 NaN 0 589.8175659179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SRWPAMKFR_ ENSG00000120594|ENST00000377252|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;nc|ENSG00000120594|Q6UX71-3|PLXDC2 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82772.3 NaN 23081 6275 29356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29362 115.07 NaN 17058 35 0 1949.6 0.411 + 32985 YARQKLWLY 9 22 620.8462238709066 NaN 0 621.32373046875 PEAK HCD FTMS 0 0 0 29361 1965.5469970703125 0.8353161362107397 -1 0.00707244873046875 1 Unmodified _YARQKLWLY_ REV__ENSG00000127366|ENST00000247883|TAS2R5 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89421.5 NaN 23082 6278 29361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29364 115.08 NaN 39034 35 0 10282 0.327 -1 0 18 542.3900615888202 541.3827851222202 1 542.389892578125 MULTI HCD FTMS 0 0 0 29363 13310.7470703125 0.34711192451847667 17 -0.14897918701171875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92548.7 NaN 23083 6279 29363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29365 115.08 NaN 20316 35 0 3757.4 0.261 -1 0 17 572.4369617551237 NaN 0 572.436279296875 PEAK HCD FTMS 0 0 0 29363 3974.934814453125 0.2732072027094566 20 -0.1711883544921875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97557.1 NaN 23084 6279 29363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29367 115.09 NaN 25628 35 0 5471.4 0.411 + 23350 RKKKKKKKTI 10 25 643.4623413085938 NaN 0 643.4623413085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RKKKKKKKTI_ ENST00000308713.9_3_16:29910378-29910510:-|nuORF 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94715.9 NaN 23085 6280 29366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29369 115.09 NaN 33244 35 0 5828.1 0.327 -1 0 25 525.3634376574763 524.3561611908763 1 525.3633422851562 MULTI HCD FTMS 0 0 0 29368 7631.04638671875 0.2067379659705054 14 -0.124267578125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85197.1 NaN 23086 6281 29368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29370 115.1 NaN 43672 35 0 9876.3 0.261 -1 0 25 551.2148207931193 550.2075443265193 1 550.7481689453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 1 QQ[{M(Oxidation (M))|F}E] 4 -1 + 10.458 0 0 1.9007 1.9007 84.663 0 0 0 5.8534811358448735 5.8534811358448735 5.8534811358448735 10.457574905606748 0 0 0 0 0 QQ[{M(Oxidation (M))|F}E] 1.9007 - 2 + NaN NaN 91413 NaN 23087 6281 29368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29372 115.1 NaN 22010 35 0 2398.1 0.411 + -1 DDRPVCYQI 9 25 583.2698974609375 NaN 0 583.2698974609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _DDRPVC(Carbamidomethyl (C))YQI_ REV__ENSG00000101204|ENST00000370263|CHRNA4;REV__nc|ENSG00000101204|P43681-2|CHRNA4 0.5247636613948944 0.2927039108006614 1 S 1 -1 2.2185 0 0 0.19068 0 0 580.6112423810563 492.82981287174067 1073.441055252797 0 0 0 0 0 0 0 0 0 S 0.19068 - 1 + NaN NaN 101362.7 NaN 23088 6282 29371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29374 115.11 NaN 26221 35 0 5655.1 0.327 + 2017 DDDGELFASM 10 15 550.2173149460601 NaN 0 549.822265625 PEAK HCD FTMS 0 0 0 29373 7750.49072265625 0.6179559737360424 22 -0.17791748046875 1 Unmodified _DDDGELFASM_ ENSG00000153815|ENST00000537098|CMIP;ENST00000565680.1_1_16:81725275-81734153:+|nuORF;ENST00000569146.1_1_16:81726864-81730296:+|nuORF;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83269.9 NaN 23089 6283 29373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29375 115.12 NaN 37899 35 0 10027 0.261 + -1 YHRYHKWRQCT 11 25 559.6002807617188 NaN 0 559.6002807617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))YHRYHKWRQC(Carbamidomethyl (C))T_ REV__nc|ENSG00000126562|Q96J92-3|WNK4 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95022.9 NaN 23090 6283 29373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29379 115.14 NaN 20223 35 0 6514.9 0.327 + -1 ASCCVEMQED 10 16 607.2099337092908 NaN 0 607.2088012695312 PEAK HCD FTMS 0 0 0 29378 10024.0791015625 0.5686101319130955 17 -0.14009857177734375 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))ASC(Carbamidomethyl (C))CVEMQED_ REV__ENST00000310301.8_1_7:38836408-38836444:-|nuORF 0.4007161486938917 0.3398413315442166 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85694.2 NaN 23091 6286 29378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29380 115.14 NaN 25731 35 0 5628.4 0.261 + 23466 RLRLLRNLL 9 25 583.8967895507812 NaN 0 583.8967895507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RLRLLRNLL_ ENST00000563591.5_1_16:28858025-28877416:+|nuORF 0.5247636613948944 0.2927039108006614 1 Q 1 9 1.1092 0 0 0.09523 0 0 802.3929460431656 231.32114587955314 1033.7140919227188 0 0 0 0 0 0 0 0 0 Q 0.09523 - 1 + NaN NaN 107914.8 NaN 23092 6286 29378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29381 115.14 NaN 18722 35 0 3406 0.261 -1 0 13 572.4372545342542 NaN 0 572.8372802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83893.2 NaN 23093 6286 29378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29383 115.15 NaN 24748 35 0 5293.1 0.411 + -1 LCLFYFQAMC 10 28 456.864141528964 NaN 0 456.8642883300781 PEAK HCD FTMS 0 0 0 29382 5850.42578125 0.7520730435946285 -8 0.072723388671875 1 2 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))LFYFQAM(Oxidation (M))C(Carbamidomethyl (C))_ REV__ENSG00000196098|ENST00000354924|OR5K4;REV__ENSG00000206536|ENST00000383695|OR5K3 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95779.4 NaN 23094 6287 29382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29385 115.16 NaN 45805 35 0 11904 0.327 -1 0 23 481.33731413805657 480.3300376714566 1 481.3365173339844 MULTI HCD FTMS 0 0 0 29384 17201.521484375 0.07968402051102992 -28 0.230255126953125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83275.7 NaN 23095 6288 29384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29386 115.16 NaN 21753 35 0 5386 0.261 -1 0 17 569.3898393622803 568.3825628956803 1 569.3900756835938 MULTI HCD FTMS 0 0 0 29384 6911.11474609375 0.06726426517499856 -27 0.22241973876953125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82112.1 NaN 23096 6288 29384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29387 115.16 NaN 25881 35 0 4876.7 0.261 + 28912 TWKFGRGH 8 22 494.75958251953125 NaN 0 494.75958251953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TWKFGRGH_ REV__ENST00000493039.5_1_20:54974372-54978572:+|nuORF 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95787.4 NaN 23097 6288 29384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29388 115.17 NaN 47443 35 0 8903.4 0.261 + 27952 TEVHPCRRL 9 30 555.7978574421019 NaN 0 555.8601684570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _TEVHPCRRL_ REV__ENSG00000179583|ENST00000324288|CIITA;REV__nc|ENSG00000179583|P33076-3|CIITA;REV__nc|ENSG00000179583|P33076|CIITA 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87261.7 NaN 23098 6288 29384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29390 115.17 NaN 29534 35 0 4997.4 0.411 + -1 WADMYRDMC 9 29 421.8234811864821 NaN 0 421.8232727050781 PEAK HCD FTMS 0 0 0 29389 3128.70947265625 0.3147416932046099 1 -0.00791168212890625 1 Carbamidomethyl (C),Oxidation (M) _WADM(Oxidation (M))YRDMC(Carbamidomethyl (C))_ REV__ENSG00000099800|ENST00000215570|TIMM13 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104430.3 NaN 23099 6289 29389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29393 115.19 NaN 33372 35 0 3915.5 0.411 -1 YQCLVTTLL 9 28 555.7978574421019 NaN 0 555.7969970703125 PEAK HCD FTMS 0 0 0 29392 2550.262939453125 0.5239557327932737 1 -0.00765228271484375 1 Carbamidomethyl (C) _YQC(Carbamidomethyl (C))LVTTLL_ ENSG00000181830|ENST00000314134|SLC35C1;nc|ENSG00000181830|Q96A29-2|SLC35C1 2.0597508629832335 0.2852655770354268 1 {I|L} 1 -1 2.4743 0 0 0.22299 0 0 582.2561019918224 411.2245272272094 993.4806292190319 0 0 0 0 0 0 0 0 0 {I|L} 0.22299 + + 1 + NaN NaN 91226.3 NaN 23100 6291 29392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29395 115.2 NaN 22194 35 0 2294.6 0.411 + 713 AQEAAEEPLIE 11 17 600.2939453125 NaN 0 600.2939453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _AQEAAEEPLIE_ ENSG00000074317|ENST00000393693|SNCB 2.282774691075616 0.33564456907475565 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95171.2 NaN 23101 6292 29394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29401 115.23 NaN 30996 35 0 4867.7 0.411 -1 0 30 528.410850081415 NaN 0 528.41064453125 PEAK HCD FTMS 0 0 0 29400 5816.576171875 0.7804352332366596 -1 0.00687408447265625 1 NaN NaN 1 A 1 -1 6.9897 0 0 0.66265 0 0 783.3418895165424 197.40943323306877 980.7513227496112 0 0 0 0 0 0 0 0 0 A 0.66265 - 1 + NaN NaN 95615.5 NaN 23102 6297 29400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29403 115.24 NaN 22420 35 0 2330.7 0.411 + -1 APLKPIESCLI 11 25 620.8535766601562 NaN 0 620.8535766601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _APLKPIESC(Carbamidomethyl (C))LI_ REV__ENSG00000131400|ENST00000253719|NAPSA;REV__ENST00000598044.1_1_19:50861812-50862477:-|nuORF 1.3295316138638542 0.3383486451652214 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92951.6 NaN 23103 6298 29402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29405 115.25 NaN 28313 35 0 2173.5 0.411 -1 CCGCCHRSKCG 11 30 607.2099337092908 NaN 0 607.209716796875 PEAK HCD FTMS 0 0 0 29404 7957.69677734375 0.4513957809435621 30 -0.21424102783203125 1 Carbamidomethyl (C) _CCGCCHRSKC(Carbamidomethyl (C))G_ ENSG00000105697|ENST00000222304|HAMP 0.26902006276349055 0.3413570110244116 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.57652 0 0 477.54131409651274 584.7621554010374 1062.3034694975502 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.57652 - 2 + NaN NaN 92503.9 NaN 23104 6299 29404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29414 115.3 NaN 60388 35 0 27586 0.327 -1 0 22 514.3586853774246 513.3514089108246 1 514.3582763671875 MULTI HCD FTMS 0 0 0 29413 36701.921875 0.4096407730274187 -8 0.05609130859375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98263.7 NaN 23105 6307 29413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29415 115.31 NaN 79402 35 0 19467 0.261 + 8125 GLSEALAELEE 11 30 580.7871704101562 NaN 0 580.7871704101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _GLSEALAELEE_ REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112205.1 NaN 23106 6307 29413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29418 115.32 NaN 39071 35 0 11263 0.411 -1 0 28 572.4371399132636 571.4298634466636 1 572.4366455078125 MULTI HCD FTMS 0 0 0 29417 13404.669921875 0.3729866185060125 -7 0.05089569091796875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95473 NaN 23107 6309 29417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29421 115.33 NaN 29765 35 0 5583.5 0.327 + -1 APWERHHYM 9 23 621.7774658203125 NaN 0 621.7774658203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _APWERHHYM(Oxidation (M))_ REV__nc|ENSG00000219438|Q7Z5A7-3|TAFA5 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94604.8 NaN 23108 6311 29420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29422 115.34 NaN 38539 35 0 8556.6 0.262 -1 0 24 511.38407481671834 NaN 0 511.3841247558594 PEAK HCD FTMS 0 0 0 29420 13501.8388671875 0.6609889311862915 -8 0.05860137939453125 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101061.9 NaN 23109 6311 29420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29426 115.36 NaN 29828 35 0 3828.5 0.411 -1 MDRDCCFYL 9 30 640.2481689453125 NaN 0 640.2481689453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _MDRDC(Carbamidomethyl (C))C(Carbamidomethyl (C))FYL_ ENST00000451318.2_1_9:135645379-135645490:-|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101753.3 NaN 23110 6314 29425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29428 115.36 NaN 30583 35 0 4299.8 0.411 -1 SYNNFFRMF 9 25 621.2733480477087 NaN 0 621.2734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 1.844237919475145 0.28630992268396543 1 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.37114 0 0 478.1765656249111 599.3155001275999 1077.492065752511 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.37114 - 1 + NaN NaN 95659 NaN 23111 6315 29427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29430 115.37 NaN 45791 35 0 6338.2 0.411 + -1 IEQQLRRRK 9 29 634.8787231445312 NaN 0 634.8787231445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IEQQLRRRK_ REV__ENSG00000141200|ENST00000268919|KIF2B;REV__KIF2B|p.R160W|1|0.31|ENSG00000141200|chr17:53823511-53823511|C/T|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107279.9 NaN 23112 6316 29429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29432 115.38 NaN 40056 35 0 5771.7 0.411 + 14781 LIFCIKRFTK 10 26 634.8788452148438 NaN 0 634.8788452148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LIFCIKRFTK_ ENSG00000168883|ENST00000323701|USP39;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101713.1 NaN 23113 6317 29431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29445 115.46 NaN 37747 35 0 9050.8 0.411 -1 0 35 484.384461348729 NaN 0 484.3845520019531 PEAK HCD FTMS 0 0 0 29444 11065.240234375 0.6697091245839883 9 -0.06516265869140625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86736.9 NaN 23114 6329 29444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29450 115.49 NaN 24899 35 0 1799.2 0.411 + 30221 VILIVLPVIVV 11 24 588.9183959960938 NaN 0 588.9183959960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VILIVLPVIVV_ REV__ENSG00000158481|ENST00000368170|CD1C 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85989 NaN 23115 6333 29449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29453 115.5 NaN 26946 35 0 4371 0.411 -1 0 29 405.32134623974446 NaN 0 405.3212890625 PEAK HCD FTMS 0 0 0 29452 2230.018310546875 0.21012554684855214 1 -0.0074615478515625 1 NaN NaN 1 W 1 -1 3.0989 0 0 0.38323 0 0 422.6884860812483 196.84116541080314 619.5296514920515 0 0 0 0 0 0 0 0 0 W 0.38323 - 1 + NaN NaN 100544.4 NaN 23116 6335 29452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29455 115.51 NaN 31472 35 0 5190.5 0.411 -1 0 40 511.38407481671834 NaN 0 511.384033203125 PEAK HCD FTMS 0 0 0 29454 3308.43408203125 0.1619659610289561 17 -0.121551513671875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92211.1 NaN 23117 6336 29454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29459 115.53 NaN 25051 35 0 7448.1 0.411 + -1 VCCCCDLVEY 10 23 421.8232915540591 NaN 0 421.82354736328125 PEAK HCD FTMS 0 0 0 29458 3941.65673828125 0.4133108457096842 4 -0.033447265625 1 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))CC(Carbamidomethyl (C))CDLVEY_ REV__ENSG00000253457|ENST00000517349|SMIM18 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87473.6 NaN 23118 6339 29458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29475 115.64 NaN 41499 35 0 5347.7 0.411 -1 0 33 555.410329349014 554.4030528824139 1 555.4103393554688 MULTI HCD FTMS 0 0 0 29474 19254.515625 0.42025570074716867 40 -0.3219757080078125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88720.9 NaN 23119 6354 29474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29478 115.65 NaN 40071 35 0 7598.9 0.411 -1 0 27 528.4106528493598 NaN 0 528.4110107421875 PEAK HCD FTMS 0 0 0 29477 7963.6728515625 0.5413519324843648 6 -0.04473114013671875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94847.7 NaN 23120 6356 29477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29481 115.67 NaN 31604 35 0 3938.6 0.411 -1 0 38 511.3840255195429 NaN 0 511.38421630859375 PEAK HCD FTMS 0 0 0 29480 3238.74169921875 0.27095968593406894 6 -0.04447174072265625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96423.3 NaN 23121 6358 29480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29483 115.68 NaN 31890 35 0 7864.2 0.411 -1 0 22 630.4428149664084 629.4355384998083 1 630.4421997070312 MULTI HCD FTMS 0 0 0 29482 12180.654296875 0.2886227429072518 46 -0.3975677490234375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99811.6 NaN 23122 6359 29482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29485 115.68 NaN 48397 35 0 18451 0.411 + 21238 PRHRRLHR 8 27 564.3442145895524 NaN 0 564.359619140625 PEAK HCD FTMS 0 0 0 29484 3189.416015625 1 0 0 1 Unmodified _PRHRRLHR_ ENSG00000140511|ENST00000359595|HAPLN3 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95130.4 NaN 23123 6360 29484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29489 115.71 NaN 29979 35 0 2881.2 0.411 + 30217 VIFLFLLLLL 10 23 602.4110119062 NaN 0 602.4102783203125 PEAK HCD FTMS 0 0 0 29488 3227.447265625 0.19924379253531344 13 -0.0970001220703125 1 Unmodified _VIFLFLLLLL_ REV__ENSG00000081248|ENST00000362061|CACNA1S 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95194.1 NaN 23124 6363 29488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29492 115.72 NaN 39804 35 0 7830.2 0.411 + -1 ANEQNSYYDC 10 41 421.82327782099486 NaN 0 421.8239440917969 PEAK HCD FTMS 0 0 0 29491 9441.8935546875 0.6570874897284408 -31 0.22376251220703125 1 Carbamidomethyl (C) _ANEQNSYYDC(Carbamidomethyl (C))_ REV__ENST00000339431.8_1_7:102585067-102585361:+|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91467.2 NaN 23125 6365 29491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29495 115.73 NaN 99654 35 0 23719 0.327 + 7503 FWHIYKYT 8 28 579.2928742328664 NaN 0 579.2927856445312 PEAK HCD FTMS 0 0 0 29494 8399.6572265625 0.11236931517346571 366 -2.8100433349609375 1 Unmodified _FWHIYKYT_ REV__ENST00000395965.7_2_5:92954874-92955120:-|nuORF 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110101.6 NaN 23126 6367 29494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29496 115.74 NaN 33619 35 0 9938.4 0.264 + 12112 KKKKKKKGKL 10 25 405.2999345759336 NaN 0 405.2999572753906 PEAK HCD FTMS 0 0 0 29494 1640.4039306640625 0.24791426928564356 1 -0.00946807861328125 2 Unmodified _KKKKKKKGKL_ ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87541 NaN 23127 6367 29494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29499 115.75 NaN 25575 35 0 2050.5 0.411 + 32436 WCLKWFVFL 9 19 621.3283081054688 NaN 0 621.3283081054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _WCLKWFVFL_ REV__ENSG00000110975|ENST00000228567|SYT10 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93666.1 NaN 23128 6369 29498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29502 115.77 NaN 44821 35 0 9084.2 0.411 + 23358 RKKRRRSQRR 10 28 476.3064932630964 NaN 0 476.3065185546875 PEAK HCD FTMS 0 0 0 29501 10497.1357421875 0.4023632639726127 22 -0.18529510498046875 1 Unmodified _RKKRRRSQRR_ ENSG00000186854|ENST00000409520|TRABD2A;nc|ENSG00000186854|Q86V40-2|TRABD2A 0.13989180515190558 0.34006456103295546 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91090.5 NaN 23129 6371 29501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29506 115.79 NaN 23064 35 0 2791 0.411 + -1 YCKRVRAII 9 23 589.8446655273438 NaN 0 589.8446655273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _YC(Carbamidomethyl (C))KRVRAII_ REV__nc|ENSG00000196628|P15884-11|TCF4;REV__nc|ENSG00000196628|P15884-7|TCF4 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104818.8 NaN 23130 6374 29505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29510 115.81 NaN 62176 35 0 31549 0.327 -1 0 18 481.33731413805657 480.3300376714566 1 481.3371887207031 MULTI HCD FTMS 0 0 0 29509 53517.484375 0.24791343757061668 61 -0.5152740478515625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104654.9 NaN 23131 6377 29509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29511 115.81 NaN 44658 35 0 9188.1 0.261 -1 0 24 558.3849377977259 557.3776613311259 1 558.385009765625 MULTI HCD FTMS 0 0 0 29509 8865.6142578125 0.1871679961801057 63 -0.529937744140625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95228.7 NaN 23132 6377 29509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29515 115.83 NaN 34694 35 0 4582.1 0.327 -1 0 26 630.4428149664084 629.4355384998083 1 630.4422607421875 MULTI HCD FTMS 0 0 0 29514 7060.3388671875 0.16729596949690423 67 -0.5584716796875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93809.3 NaN 23133 6380 29514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29516 115.84 NaN 45581 35 0 10193 0.264 -1 TPMCEEQDSKQ 11 30 456.85158474838914 NaN 0 456.8633728027344 PEAK HCD FTMS 0 0 0 29514 1855.5653076171875 0.5725744409741877 -2 0.01409149169921875 2 Carbamidomethyl (C),Oxidation (M) _TPM(Oxidation (M))C(Carbamidomethyl (C))EEQDSKQ_ ENSG00000110888|ENST00000695402|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000537553.5_1_12:30873726-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENST00000553026.5_1_12:30881575-30884349:-|nuORF;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86396.8 NaN 23134 6380 29514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29518 115.84 NaN 33387 35 0 7822.1 0.411 -1 0 27 421.32178717949483 NaN 0 421.3284912109375 PEAK HCD FTMS 0 0 0 29517 1955.7906494140625 0.6547567322280083 3 -0.02278900146484375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91897.5 NaN 23135 6381 29517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29520 115.85 NaN 55447 35 0 13307 0.411 -1 0 33 525.3635312855757 524.3562548189757 1 525.3632202148438 MULTI HCD FTMS 0 0 0 29519 17319.2109375 0.10260864711266729 67 -0.5559921264648438 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100427.2 NaN 23136 6382 29519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29523 115.87 NaN 31854 35 0 5927.1 0.327 -1 0 24 421.32890779755934 420.32163133095935 1 421.328857421875 MULTI HCD FTMS 0 0 0 29522 6474.025390625 0.3372689677234499 -467 3.4930877685546875 1 NaN NaN 1 G 1 -1 0.088644 0 0 0.02109 0 0 248.6371048190437 111.64219843082265 360.27930324986636 0 0 0 0 0 0 0 0 0 G 0.02109 - 1 + NaN NaN 95007.5 NaN 23137 6384 29522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29524 115.87 NaN 31726 35 0 4722.8 0.261 -1 0 20 572.4371399132636 571.4298634466636 1 572.4371948242188 MULTI HCD FTMS 0 0 0 29522 8479.6259765625 0.2359466542352123 68 -0.5684661865234375 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103341.7 NaN 23138 6384 29522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29525 115.87 NaN 23705 35 0 4817.3 0.261 -1 HARMSMMIR 9 23 590.7734375 NaN 0 590.7734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 3 Oxidation (M) _HARM(Oxidation (M))SM(Oxidation (M))M(Oxidation (M))IR_ ENSG00000101350|ENST00000375712|KIF3B;nc|ENSG00000101350|O15066-2|KIF3B 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83118.5 NaN 23139 6384 29522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29526 115.88 NaN 36554 35 0 5492.2 0.261 + -1 SSHCMESFR 9 31 550.2175795587489 NaN 0 550.2420654296875 PEAK HCD FTMS 0 0 0 29522 6017.30908203125 0.4679182228883297 6 -0.05810546875 4 Oxidation (M) _SSHCM(Oxidation (M))ESFR_ REV__ENSG00000084710|ENST00000403714|EFR3B;REV__nc|ENSG00000084710|Q9Y2G0-3|EFR3B 0.45834013312273997 0.29302578994899664 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94490.9 NaN 23140 6384 29522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29527 115.88 NaN 33111 35 0 8852.1 0.262 + -1 TVVCDEWPSEF 11 23 456.86404205105146 NaN 0 456.86334228515625 PEAK HCD FTMS 0 0 0 29522 5297.10888671875 0.8442423702863464 -10 0.07752227783203125 5 Carbamidomethyl (C) _TVVC(Carbamidomethyl (C))DEWPSEF_ REV__ENST00000523169.1_1_14:102747136-102771389:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81475.9 NaN 23141 6384 29522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29529 115.89 NaN 32696 35 0 9459.5 0.412 + 16587 LVGLLIALK 9 21 470.33217671156706 NaN 0 470.33209228515625 PEAK HCD FTMS 0 0 0 29528 15951.576171875 0.023420613182281634 521 -3.9483795166015625 1 Unmodified _LVGLLIALK_ REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91721 NaN 23142 6385 29528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29531 115.89 NaN 30013 35 0 2750.5 0.411 + 3956 EQHYSQLYW 9 24 627.283935546875 NaN 0 627.283935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _EQHYSQLYW_ ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF 0.5247636613948944 0.2927039108006614 1 R 1 9 5.4846 0 0 0.43823 0 0 150.0493905255874 942.3463839166624 1092.3957744422498 0 0 0 0 0 0 0 0 0 R 0.43823 - 2 + NaN NaN 92728.1 NaN 23143 6386 29530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29534 115.91 NaN 59466 35 0 20138 0.411 -1 0 33 454.33740151938383 453.33012505278384 1 454.33734130859375 MULTI HCD FTMS 0 0 0 29533 22396.55078125 0.09833736846654875 74 -0.6025314331054688 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91752.8 NaN 23144 6388 29533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29536 115.92 NaN 42857 35 0 5104.9 0.411 + 26300 SRQRKRRRKR 10 37 476.3068913455782 NaN 0 476.306640625 PEAK HCD FTMS 0 0 0 29535 6413.34716796875 1 0 0 1 Unmodified _SRQRKRRRKR_ ENST00000319296.9_1_16:30419378-30419444:+|nuORF 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90221.5 NaN 23145 6389 29535 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29539 115.93 NaN 47978 35 0 12754 0.327 -1 0 22 481.33731413805657 480.3300376714566 1 481.3368225097656 MULTI HCD FTMS 0 0 0 29538 11011.6162109375 0.051010014015851146 75 -0.610107421875 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95680.8 NaN 23146 6391 29538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29540 115.93 NaN 38711 35 0 5071.2 0.261 + 32756 WRERRRQKRRL 11 29 547.3326779999378 NaN 0 547.3312377929688 PEAK HCD FTMS 0 0 0 29538 2242.19189453125 0.18763199488622095 -6 0.04583740234375 2 Unmodified _WRERRRQKRRL_ REV__ENSG00000164197|ENST00000389100|RNF180;REV__nc|ENSG00000164197|Q86T96-2|RNF180 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82975.9 NaN 23147 6391 29538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29541 115.94 NaN 44637 35 0 5609.8 0.261 + 8882 HNYARQIR 8 33 529.28759765625 NaN 0 529.28759765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HNYARQIR_ REV__ENSG00000105926|ENST00000222644|PALS2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102567.1 NaN 23148 6391 29538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29543 115.94 NaN 40696 35 0 11976 0.411 + -1 CFEVEELNRL 10 26 436.87916437351925 NaN 0 436.8793640136719 PEAK HCD FTMS 0 0 0 29542 10371.4296875 0.4378716531733452 83 -0.6640090942382812 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))FEVEELNRL_ REV__ENSG00000188157|ENST00000379370|AGRN;REV__nc|ENSG00000188157|O00468-3|AGRN;REV__nc|ENSG00000188157|O00468-4|AGRN;REV__nc|ENSG00000188157|O00468-5|AGRN;REV__nc|ENSG00000188157|O00468-7|AGRN;REV__nc|ENSG00000188157|O00468|AGRN 0.13989180515190558 0.34006456103295546 1 C 1 -1 2.7642 0 0 0.31709 0 0 444.8372339210635 320.88288294010005 765.7201168611635 0 0 0 0 0 0 0 0 0 C 0.31709 + + 1 + NaN NaN 91067.6 NaN 23149 6392 29542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29545 115.95 NaN 71128 35 0 8848.8 0.327 -1 0 34 536.1625565359911 535.1552800693911 1 539.1632080078125 MULTI HCD FTMS 0 0 0 29544 10849.65234375 0.3461275613649647 -496 3.7614669799804688 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87456.9 NaN 23150 6393 29544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29546 115.96 NaN 36590 35 0 3321.9 0.261 + 12048 KILRNWHPP 9 28 580.8378295898438 NaN 0 580.8378295898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KILRNWHPP_ REV__ENST00000502897.5_1_5:32585711-32588623:+|nuORF;REV__ENST00000515355.5_1_5:32586514-32588623:+|nuORF 0.6014990680409731 0.29233206172879045 1 W 1 -1 3.0989 0 0 0.26794 0 0 558.18581025215 409.29575525455317 967.4815655067032 0 0 0 0 0 0 0 0 0 W 0.26794 + + 1 + NaN NaN 88291.7 NaN 23151 6393 29544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29548 115.96 NaN 35897 35 0 7325.4 0.327 -1 0 29 421.32890779755934 420.32163133095935 1 421.3288879394531 MULTI HCD FTMS 0 0 0 29547 8069.73193359375 0.42039843757631207 -457 3.3925704956054688 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78471.5 NaN 23152 6394 29547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29549 115.97 NaN 33070 35 0 4113.3 0.261 + 22084 QHQKVHRK 8 29 530.81201171875 NaN 0 530.81201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QHQKVHRK_ ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622-2|ZNF250;nc|ENSG00000196150|P15622|ZNF250 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106234.5 NaN 23153 6394 29547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29550 115.97 NaN 32934 35 0 4664.1 0.261 + -1 LNHLLFYMP 9 19 582.2999267578125 NaN 0 582.2999267578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _LNHLLFYM(Oxidation (M))P_ REV__ENSG00000254466|ENST00000530162|OR4D10 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85806.3 NaN 23154 6394 29547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29553 115.98 NaN 33395 35 0 6582.2 0.327 + 487 ALVRLQKKIRP 11 19 441.29712371823626 NaN 0 441.2978210449219 PEAK HCD FTMS 0 0 0 29552 15364.4619140625 0.013544526248672856 504 -3.8063888549804688 1 Unmodified _ALVRLQKKIRP_ REV__ENSG00000270379|ENST00000604834|HEATR9;REV__nc|ENSG00000270379|A2RTY3-3|HEATR9 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93277.8 NaN 23155 6396 29552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29554 115.99 NaN 34744 35 0 4632.2 0.261 + 12514 KRRLLILGGI 10 29 569.89306640625 NaN 0 569.89306640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KRRLLILGGI_ ENSG00000185758|ENST00000541814|CLDN24;nc|ENSG00000177300|Q8N7P3|CLDN22 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99657.4 NaN 23156 6396 29552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29557 116 NaN 46446 35 0 10094 0.411 + 30721 VPILLVLRKLI 11 39 426.30618909994456 NaN 0 426.30633544921875 PEAK HCD FTMS 0 0 0 29556 10111.8466796875 0.21464340632437975 -12 0.1050872802734375 1 Unmodified _VPILLVLRKLI_ REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96199.8 NaN 23157 6398 29556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29559 116.01 NaN 50405 35 0 6599 0.411 + -1 IYCCCYQPC 9 41 403.81285995147573 NaN 0 403.81280517578125 PEAK HCD FTMS 0 0 0 29558 1605.2249755859375 0.17931428433353683 -3 0.024017333984375 1 2 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))C(Carbamidomethyl (C))CYQPC_ REV__ENSG00000145103|ENST00000344209|ILDR1;REV__ENST00000460554.1_1_3:121712781-121740924:-|nuORF;REV__nc|ENSG00000145103|Q86SU0-2|ILDR1;REV__nc|ENSG00000145103|Q86SU0-3|ILDR1;REV__nc|ENSG00000145103|Q86SU0-6|ILDR1 0.26902006276349055 0.29394320858957723 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106962.6 NaN 23158 6399 29558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29561 116.01 NaN 45226 35 0 11992 0.327 -1 0 26 437.31082856761327 436.3035521010133 1 437.3104553222656 MULTI HCD FTMS 0 0 0 29560 14485.5966796875 0.07163126465728682 86 -0.6805038452148438 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95951 NaN 23159 6400 29560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29562 116.02 NaN 60130 35 0 8638 0.261 + 8641 HESYFPHRH 9 33 403.85704892028195 NaN 0 403.85675048828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _HESYFPHRH_ REV__nc|ENSG00000177910|B4DYI2|SPATA31C2 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95374.2 NaN 23160 6400 29560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29564 116.02 NaN 56073 35 0 14373 0.326 -1 0 26 498.3638364432766 497.35655997667664 1 498.3636779785156 MULTI HCD FTMS 0 0 0 29563 15524.9931640625 0.06158355604905613 84 -0.6633377075195312 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92827.4 NaN 23161 6401 29563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29565 116.03 NaN 26651 35 0 6253.1 0.261 -1 CREEETDCCRA 11 17 495.8551025390625 NaN 0 495.8551025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))REEETDC(Carbamidomethyl (C))C(Carbamidomethyl (C))RA_ ENST00000328705.7_1_12:75706630-75719020:-|nuORF 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94516.5 NaN 23162 6401 29563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29566 116.03 NaN 31918 35 0 3799 0.261 + 23967 RVMPLPWLQ 9 23 570.3236694335938 NaN 0 570.3236694335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RVMPLPWLQ_ REV__ENST00000368932.5_1_6:110501639-110501768:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86275.1 NaN 23163 6401 29563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29569 116.04 NaN 32070 35 0 5107.7 0.411 -1 RHTSAVMTW 9 23 552.76611328125 NaN 0 552.76611328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _RHTSAVM(Oxidation (M))TW_ ENST00000359035.4_1_10:135126205-135126367:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94655.1 NaN 23164 6403 29568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29571 116.05 NaN 57369 35 0 9208.7 0.327 -1 0 24 481.33731413805657 480.3300376714566 1 481.33624267578125 MULTI HCD FTMS 0 0 0 29570 16035.087890625 0.07428065439056453 88 -0.6885452270507812 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89132.3 NaN 23165 6404 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29572 116.06 NaN 32053 35 0 5542.4 0.261 + -1 SRLKLMWEV 9 23 589.3219604492188 NaN 0 589.3219604492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _SRLKLM(Oxidation (M))WEV_ REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87247.6 NaN 23166 6404 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29573 116.06 NaN 26489 35 0 2801.5 0.261 -1 LPGRMRRNM 9 26 573.8043212890625 NaN 0 573.8043212890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _LPGRMRRNM(Oxidation (M))_ CARD6|p.H139Sfs*49|1|0.18|ENSG00000132357|chr5:40843283-40843304|CACTTGGATTTGGAAACCTCTG/-|frameshift_variant 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86193.4 NaN 23167 6404 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29574 116.06 NaN 44452 35 0 8650.6 0.261 -1 0 25 542.3901094129709 541.3828329463709 1 542.39013671875 MULTI HCD FTMS 0 0 0 29570 10085.8330078125 0.06095371431042788 90 -0.7032623291015625 4 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91351.6 NaN 23168 6404 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29575 116.07 NaN 25719 35 0 3754.3 0.261 + 3497 EHLLCVRHCV 10 26 604.8074951171875 NaN 0 604.8074951171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EHLLCVRHCV_ nc|ENSG00000122735|Q9UI46-2|DNAI1 1.6526216038709556 0.33876987398426067 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87168.9 NaN 23169 6404 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29576 116.07 NaN 40681 35 0 5429.3 0.263 + 31248 VVRNKIKI 8 28 485.3304748535156 NaN 0 485.3304748535156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VVRNKIKI_ REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85676.6 NaN 23170 6404 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29578 116.07 NaN 41409 35 0 8775.4 0.411 -1 0 25 421.3214007404594 NaN 0 421.3284912109375 PEAK HCD FTMS 0 0 0 29577 2576.813232421875 1 0 0 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92303.3 NaN 23171 6405 29577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29580 116.08 NaN 36146 35 0 4409.1 0.411 -1 0 29 533.1903638672757 532.1830874006756 1 533.1913452148438 MULTI HCD FTMS 0 0 0 29579 7459.29443359375 0.277281286142538 192 -1.4521331787109375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94496.2 NaN 23172 6406 29579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29583 116.1 NaN 75378 35 0 13611 0.327 -1 0 28 508.2118565438519 507.20458007725193 1 508.2119140625 MULTI HCD FTMS 0 0 0 29582 22602.2109375 0.49484646644347047 -287 2.1783905029296875 1 NaN NaN 1 P 1 -1 1.5938 0 0 0.31423 0 0 206.15533798916442 200.97797571353752 407.1333137027019 0 0 0 0 0 0 0 0 0 P 0.31423 - 1 + NaN NaN 98323.9 NaN 23173 6408 29582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29584 116.1 NaN 23340 35 0 4314.8 0.261 + -1 YISVSFNCF 9 20 568.7566528320312 NaN 0 568.7566528320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _YISVSFNC(Carbamidomethyl (C))F_ REV__ENSG00000079101|ENST00000692774|CLUL1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92907.3 NaN 23174 6408 29582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29586 116.11 NaN 14356 35 0 2301.4 0.411 -1 0 22 624.2355879753553 623.2283115087553 1 624.2356567382812 MULTI HCD FTMS 0 0 0 29585 7538.005859375 0.46682789404617864 -397 2.9220809936523438 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91050.3 NaN 23175 6409 29585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29588 116.11 NaN 17003 35 0 5092.7 0.411 + -1 RPRLFLLH 8 18 547.3326779999378 NaN 0 547.3323974609375 PEAK HCD FTMS 0 0 0 29587 6549.962890625 0.5481166025959685 11 -0.08214569091796875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RPRLFLLH_ REV__ENSG00000168237|ENST00000436784|GLYCTK;REV__ENST00000489173.1_1_3:52325707-52327139:+|nuORF;REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK;REV__nc|ENSG00000168237|Q8IVS8-6|GLYCTK 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86082.5 NaN 23176 6410 29587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29591 116.13 NaN 21116 35 0 4085.4 0.411 + -1 NHYMNNEFQR 10 21 456.86408665773763 NaN 0 456.8639831542969 PEAK HCD FTMS 0 0 0 29590 3889.72314453125 0.3514096124872503 -340 2.54071044921875 1 Oxidation (M) _NHYM(Oxidation (M))NNEFQR_ REV__KY|p.K343N|1|0.43|ENSG00000174611|chr3:134608710-134608710|C/G|missense_variant 0.15932191953741626 0.34004793154798674 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80378.5 NaN 23177 6412 29590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29601 116.2 NaN 31160 35 0 5840.6 0.411 -1 0 26 459.17141070864506 458.16413424204507 1 459.1719665527344 MULTI HCD FTMS 0 0 0 29600 16410.85546875 0.5620737215040029 217 -1.6383209228515625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87888.7 NaN 23178 6421 29600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29609 116.25 NaN 27148 35 0 6092.7 0.411 + 12201 KKRRRKKKKVS 11 20 481.3370363293835 NaN 0 481.3367614746094 PEAK HCD FTMS 0 0 0 29608 10482.103515625 0.5721326987339354 15 -0.1131439208984375 1 Unmodified _KKRRRKKKKVS_ REV__ENSG00000101577|ENST00000677752|LPIN2;REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87566.4 NaN 23179 6428 29608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29611 116.26 NaN 23867 35 0 5735.7 0.411 -1 0 17 562.0474654095891 NaN 0 562.04736328125 PEAK HCD FTMS 0 0 0 29610 4052.218017578125 0.5430337073872792 -9 0.06760406494140625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89898 NaN 23180 6429 29610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29617 116.29 NaN 26350 35 0 6926.7 0.411 + 28425 TPILRRLKM 9 22 564.3589670655094 NaN 0 564.3594970703125 PEAK HCD FTMS 0 0 0 29616 6725.2861328125 0.660470004770327 29 -0.224212646484375 1 Unmodified _TPILRRLKM_ ENST00000589727.5_1_17:40613024-40622135:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93304.8 NaN 23181 6434 29616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29620 116.31 NaN 11918 35 0 2421.5 0.411 -1 0 22 572.4368076397191 NaN 0 572.4361572265625 PEAK HCD FTMS 0 0 0 29619 3578.01171875 0.7381186383979498 9 -0.0669097900390625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105124.7 NaN 23182 6436 29619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29631 116.38 NaN 29733 35 0 6010.5 0.411 + 12202 KKRRRKKKKVS 11 32 481.3370363293835 NaN 0 481.3372802734375 PEAK HCD FTMS 0 0 0 29630 6472.634765625 0.3532884397541002 33 -0.25405120849609375 1 Unmodified _KKRRRKKKKVS_ REV__ENSG00000101577|ENST00000677752|LPIN2;REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102799.7 NaN 23183 6446 29630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29639 116.44 NaN 9240.2 35 0 2210.4 0.411 -1 0 16 589.5321044921875 NaN 0 589.5321044921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.59383 0 0 678.0077291974625 348.95270715885005 1026.9604363563126 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.59383 - 1 + NaN NaN 84701.1 NaN 23184 6453 29638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29641 116.45 NaN 27225 35 0 4488.2 0.327 -1 MKKVMQTMDGN 11 21 452.8699503438398 NaN 0 452.8697814941406 PEAK HCD FTMS 0 0 0 29640 17357.234375 0.7095771594649569 -278 2.1489715576171875 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))KKVMQTM(Oxidation (M))DGN_ tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83669 NaN 23185 6454 29640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29642 116.45 NaN 39645 35 0 10681 0.261 + 30296 VKLAKRLKK 9 20 542.3898260520187 NaN 0 542.3895874023438 PEAK HCD FTMS 0 0 0 29640 4887.68603515625 0.43097761925961264 -24 0.18486785888671875 2 Unmodified _VKLAKRLKK_ ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83325.6 NaN 23186 6454 29640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29652 116.52 NaN 24570 35 0 4853.2 0.411 + 12203 KKRRRKKKKVS 11 18 481.3370363293835 NaN 0 481.3376159667969 PEAK HCD FTMS 0 0 0 29651 5202.32666015625 0.2839526615372512 50 -0.375579833984375 1 Unmodified _KKRRRKKKKVS_ REV__ENSG00000101577|ENST00000677752|LPIN2;REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86469.5 NaN 23187 6463 29651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29660 116.57 NaN 28234 35 0 7449.6 0.411 -1 0 24 498.36378216506125 497.35650569846126 1 498.36370849609375 MULTI HCD FTMS 0 0 0 29659 7412.0009765625 0.30736680313844317 58 -0.43398284912109375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92892.2 NaN 23188 6470 29659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29668 116.62 NaN 14090 35 0 4922.8 0.411 + 32504 WFRVLARGRI 10 20 637.3858527302833 NaN 0 637.3859252929688 PEAK HCD FTMS 0 0 0 29667 5503.1025390625 0.5949736599127575 -16 0.11888885498046875 1 Unmodified _WFRVLARGRI_ REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91130.4 NaN 23189 6477 29667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29675 116.67 NaN 23848 35 0 4258 0.411 + 12204 KKRRRKKKKVS 11 14 481.3370363293835 NaN 0 481.3369445800781 PEAK HCD FTMS 0 0 0 29674 10392.6796875 0.5672517799336191 70 -0.5205001831054688 1 Unmodified _KKRRRKKKKVS_ REV__ENSG00000101577|ENST00000677752|LPIN2;REV__LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90370.3 NaN 23190 6483 29674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29677 116.68 NaN 8743.2 35 0 2271 0.411 -1 ICFVEYYCC 9 17 600.2299940236518 NaN 0 600.22998046875 PEAK HCD FTMS 0 0 0 29676 4602.24755859375 0.8887948739709751 -5 0.04061126708984375 1 Carbamidomethyl (C) _ICFVEYYC(Carbamidomethyl (C))C_ ENSG00000113456|ENST00000382038|RAD1;nc|ENSG00000113456|O60671-2|RAD1 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95610.5 NaN 23191 6484 29676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29682 116.71 NaN 17502 35 0 6152 0.411 + 12255 KLKLVALHK 9 20 525.3632171477641 NaN 0 525.3626098632812 PEAK HCD FTMS 0 0 0 29681 5825.103515625 0.7667413346098417 25 -0.18511199951171875 1 Unmodified _KLKLVALHK_ ENSG00000182827|ENST00000366812|ACBD3 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87478.9 NaN 23192 6488 29681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29684 116.72 NaN 28528 35 0 8198.9 0.411 -1 0 26 498.36378216506125 497.35650569846126 1 498.36358642578125 MULTI HCD FTMS 0 0 0 29683 9828.33203125 0.4075691579346625 77 -0.5774765014648438 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91945.9 NaN 23193 6489 29683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29707 116.88 NaN 25651 35 0 5492.7 0.411 + 34543 YPISLFFA 8 31 479.25818478030567 NaN 0 479.258056640625 PEAK HCD FTMS 0 0 0 29706 4828.4462890625 0.5498585298357362 28 -0.20774078369140625 1 Unmodified _YPISLFFA_ REV__ENSG00000136404|ENST00000322019|TM6SF1;REV__nc|ENSG00000136404|Q9BZW5-2|TM6SF1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94226.9 NaN 23194 6511 29706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29712 116.91 NaN 8479 35 0 2158.3 0.411 + 23351 RKKKKKKKTI 10 15 643.4632397122733 NaN 0 643.4632568359375 PEAK HCD FTMS 0 0 0 29711 1471.745849609375 0.3899586033692513 1 -0.0079498291015625 1 Unmodified _RKKKKKKKTI_ ENST00000308713.9_3_16:29910378-29910510:-|nuORF 0 0.34018428902965525 1 V 1 10 6.9897 0 0 0.54398 0 0 543.1546765907591 639.6697481744749 1182.824424765234 0 0 0 0 0 0 0 0 0 V 0.54398 - 1 + NaN NaN 85590.5 NaN 23195 6515 29711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29731 117.04 NaN 8163.2 35 0 2360.5 0.411 -1 ILELSMIRQL 10 15 629.3659342683289 NaN 0 629.365966796875 PEAK HCD FTMS 0 0 0 29730 3345.3251953125 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ILELSMIRQL_ ENST00000522666.1_1_5:151175099-151176810:+|nuORF 0.45834013312273997 0.33979201340002624 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89434.8 NaN 23196 6533 29730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29738 117.09 NaN 17224 35 0 6100.9 0.411 + 14571 LFLACMLKR 9 23 547.8158075443047 NaN 0 547.81591796875 PEAK HCD FTMS 0 0 0 29737 2168.345458984375 0.29449715587718844 -5 0.0369110107421875 1 Unmodified _LFLACMLKR_ ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1 2.0597508629832335 0.2852655770354268 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97800.8 NaN 23197 6539 29737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29743 117.12 NaN 7375.5 35 0 2004.7 0.411 -1 0 14 604.5103759765625 NaN 0 604.5103759765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92121.3 NaN 23198 6543 29742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29748 117.15 NaN 14563 35 0 5366.3 0.411 + 12312 KLWHRQLL 8 13 547.3326984093517 NaN 0 547.3333740234375 PEAK HCD FTMS 0 0 0 29747 3405.15673828125 0.5600728874634141 2 -0.0154571533203125 1 Unmodified _KLWHRQLL_ REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84949.9 NaN 23199 6547 29747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29757 117.21 NaN 19060 35 0 5896.6 0.411 + 30373 VLKLLLLAL 9 19 498.3637690930049 NaN 0 498.3635559082031 PEAK HCD FTMS 0 0 0 29756 1709.0985107421875 0.315330095680077 -5 0.03673553466796875 1 Unmodified _VLKLLLLAL_ REV__nc|ENSG00000133731|P29218-2|IMPA1 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89200.6 NaN 23200 6555 29756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29760 117.22 NaN 22852 35 0 4922.1 0.411 + 28426 TPILRRLKM 9 19 564.3590200279468 NaN 0 564.3590087890625 PEAK HCD FTMS 0 0 0 29759 5255.9462890625 0.5841727194982927 -10 0.07482147216796875 1 Unmodified _TPILRRLKM_ ENST00000589727.5_1_17:40613024-40622135:+|nuORF 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94924.7 NaN 23201 6557 29759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29762 117.23 NaN 6995.1 35 0 1961.8 0.411 -1 LLHICRCY 8 13 567.7810668945312 NaN 0 567.7810668945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _LLHIC(Carbamidomethyl (C))RC(Carbamidomethyl (C))Y_ ENST00000361354.8_1_2:183867964-183888642:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86806.5 NaN 23202 6558 29761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29765 117.24 NaN 21724 35 0 5823.5 0.411 -1 AEPEDHYFLMT 11 27 456.86408665773763 NaN 0 456.8639831542969 PEAK HCD FTMS 0 0 0 29764 4337.59716796875 0.39187193619801514 -193 1.5094451904296875 1 Oxidation (M) _AEPEDHYFLM(Oxidation (M))T_ ENSG00000133627|ENST00000256001|ACTR3B;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B 0.08335046087909445 0.3418837022149213 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94338.2 NaN 23203 6560 29764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29780 117.35 NaN 32167 35 0 7290.9 0.411 -1 0 21 471.5953693441574 2352.940464387787 5 471.7959289550781 MULTI HCD FTMS 0 0 0 29779 13598.3359375 0.7539974106324349 -106 0.797149658203125 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99345.1 NaN 23204 6574 29779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29782 117.36 NaN 24270 35 0 5709 0.327 + 28697 TSKKKLKK 8 21 480.8323669433594 NaN 0 480.8323669433594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TSKKKLKK_ REV__tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99168.8 NaN 23205 6575 29781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29783 117.37 NaN 13909 35 0 4919.8 0.261 + -1 YYSVMLRMA 9 13 583.272705078125 NaN 0 583.272705078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _YYSVM(Oxidation (M))LRM(Oxidation (M))A_ REV__ENST00000537356.3_1_X:103358311-103358374:+|nuORF 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85819.6 NaN 23206 6575 29781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29792 117.42 NaN 32884 35 0 7233.4 0.411 -1 0 23 471.5953693441574 2352.940464387787 5 471.7954406738281 MULTI HCD FTMS 0 0 0 29791 14383.525390625 0.797534415250736 -97 0.7285079956054688 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96309.9 NaN 23207 6583 29791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29805 117.51 NaN 6856.3 35 0 1626.7 0.411 + 19246 NKRWMRNK 8 13 566.8114121706294 NaN 0 566.811279296875 PEAK HCD FTMS 0 0 0 29804 1442.9803466796875 0.3423870868552314 1 -0.00794219970703125 1 Unmodified _NKRWMRNK_ REV__ENSG00000080618|ENST00000181383|CPB2;REV__ENSG00000163751|ENST00000296046|CPA3 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89851 NaN 23208 6595 29804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29810 117.54 NaN 7090.9 35 0 2477.4 0.411 + -1 DLYRRCAF 8 12 571.7720947265625 NaN 0 571.7720947265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))DLYRRC(Carbamidomethyl (C))AF_ REV__ENST00000529598.1_1_11:10582337-10590071:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82444.1 NaN 23209 6599 29809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29817 117.59 NaN 30072 35 0 7259.1 0.411 + -1 RDEEDMEEEDM 11 29 481.8341235799132 NaN 0 481.83404541015625 PEAK HCD FTMS 0 0 0 29816 7391.517578125 0.7840028456032364 2 -0.015472412109375 1 Oxidation (M) _RDEEDM(Oxidation (M))EEEDM_ REV__ENST00000592005.5_1_18:44497857-44526095:+|nuORF 0 0.34212014346876374 1 Q 1 -1 0.48455 0 0 0.050387 0 0 688.9866848045546 141.5825594537719 830.5692442583264 0 0 0 0 0 0 0 0 0 Q 0.050387 - 1 + NaN NaN 102219.9 NaN 23210 6605 29816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29820 117.6 NaN 14795 35 0 5892.2 0.411 + 35274 YVVALALFQA 10 17 547.815725558464 NaN 0 547.8162841796875 PEAK HCD FTMS 0 0 0 29819 4306.59326171875 0.6388030784563103 24 -0.1790618896484375 1 Unmodified _YVVALALFQA_ REV__ENSG00000172915|ENST00000379939|NBEA;REV__ENSG00000198589|ENST00000651943|LRBA;REV__LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;REV__nc|ENSG00000172915|Q8NFP9|NBEA;REV__nc|ENSG00000198589|P50851-2|LRBA;REV__nc|ENSG00000198589|P50851|LRBA 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92306.2 NaN 23211 6607 29819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29827 117.65 NaN 18893 35 0 5128.4 0.411 + 30297 VKLAKRLKK 9 20 542.3898143725514 NaN 0 542.3892822265625 PEAK HCD FTMS 0 0 0 29826 2070.92724609375 0.4133094269723625 -5 0.036895751953125 1 Unmodified _VKLAKRLKK_ ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4 0 0.29524684227089293 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89840 NaN 23212 6613 29826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29832 117.68 NaN 36598 35 0 6218.2 0.411 + 30722 VPILLVLRKLI 11 35 426.30616316867145 NaN 0 426.3064270019531 PEAK HCD FTMS 0 0 0 29831 9161.345703125 0.785856848875223 56 -0.41883087158203125 1 Unmodified _VPILLVLRKLI_ REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90462.8 NaN 23213 6617 29831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29834 117.68 NaN 9340 35 0 2112.3 0.411 -1 CGVDEMSTQDV 11 19 600.2300680273075 NaN 0 600.2301635742188 PEAK HCD FTMS 0 0 0 29833 2214.2783203125 0.49051509773705115 -2 0.015350341796875 1 Oxidation (M) _CGVDEM(Oxidation (M))STQDV_ ENSG00000074356|ENST00000389005|NCBP3 1.1933415558491238 0.338734977139133 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88875.4 NaN 23214 6618 29833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29848 117.78 NaN 22256 35 0 4003 0.327 + 16408 LSKILRAKKHK 11 17 441.29712371823626 NaN 0 441.2975158691406 PEAK HCD FTMS 0 0 0 29847 28460.919921875 0.025089695890383786 739 NaN 1 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104520.5 NaN 23215 6631 29847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29849 117.79 NaN 48271 35 0 10244 0.261 -1 0 27 471.5953693441574 2352.940464387787 5 471.7958068847656 MULTI HCD FTMS 0 0 0 29847 13167.19921875 0.7300918407847592 -49 0.36559295654296875 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 95129.7 NaN 23216 6631 29847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29862 117.87 NaN 35782 35 0 6691.4 0.411 + 30723 VPILLVLRKLI 11 30 426.30620412896786 NaN 0 426.30645751953125 PEAK HCD FTMS 0 0 0 29861 7816.1259765625 0.468502716055164 -17 0.12718963623046875 1 Unmodified _VPILLVLRKLI_ REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1 0 0.34212014346876374 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93066.4 NaN 23217 6643 29861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29873 117.95 NaN 9204.4 35 0 1729.2 0.411 + -1 MECSCLFFF 9 15 600.2300922213558 NaN 0 600.2300415039062 PEAK HCD FTMS 0 0 0 29872 3105.48095703125 0.6300006725924139 3 -0.02280426025390625 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))EC(Carbamidomethyl (C))SCLFFF_ REV__ENST00000301740.12_1_16:2820975-2821305:+|nuORF 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80620.3 NaN 23218 6653 29872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29877 117.97 NaN 23405 35 0 4326.9 0.411 -1 VKYWTTCPSNT 11 28 452.87985127875777 NaN 0 452.8700256347656 PEAK HCD FTMS 0 0 0 29876 1304.9010009765625 0.3989054359959671 2 -0.01549530029296875 1 Carbamidomethyl (C) _VKYWTTC(Carbamidomethyl (C))PSNT_ ENSG00000120669|ENST00000379881|SOHLH2;nc|ENSG00000120669|Q9NX45-2|SOHLH2;nc|ENSG00000120669|Q9NX45-3|SOHLH2 0.09484139111097674 0.34185110575506755 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93359.7 NaN 23219 6656 29876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29890 118.06 NaN 22887 35 0 6428.5 0.411 + 19442 NPRKITND 8 21 479.25818478030567 NaN 0 479.25811767578125 PEAK HCD FTMS 0 0 0 29889 4518.09033203125 0.5145155105614968 182 -1.3556671142578125 1 Unmodified _NPRKITND_ REV__ENSG00000108061|ENST00000369452|SHOC2;REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90086.8 NaN 23220 6668 29889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29892 118.07 NaN 8066.7 35 0 1571.5 0.411 + 17729 MCYPCFFQY 9 18 601.2317504882812 NaN 0 601.2317504882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _MCYPCFFQY_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|43|1|sense 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82797.9 NaN 23221 6669 29891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29902 118.13 NaN 27379 35 0 2623 0.411 -1 MMMHSLML 8 28 550.2173288502728 NaN 0 550.2172241210938 PEAK HCD FTMS 0 0 0 29901 13267.712890625 0.6522645342227521 224 -1.6711349487304688 1 Acetyl (Protein N-term),4 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))M(Oxidation (M))M(Oxidation (M))HSLM(Oxidation (M))L_ ENST00000404022.5_1_X:16876900-16881125:-|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84318.1 NaN 23222 6678 29901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29917 118.24 NaN 37282 35 0 5406.1 0.411 -1 0 41 404.1548379959423 403.1475615293423 1 404.149169921875 MULTI HCD FTMS 0 0 0 29916 1135.2857666015625 0.21129859106418344 -2 0.0147247314453125 1 NaN NaN 1 P 1 -1 4.6041 0 0 1.142 0 0 156.1208108963329 146.9480379693969 303.0688488657298 0 0 0 0 0 0 0 0 0 P 1.142 - 1 + NaN NaN 95006.5 NaN 23223 6692 29916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29922 118.27 NaN 22970 35 0 5037.4 0.411 -1 0 23 562.0474896283196 NaN 0 562.04736328125 PEAK HCD FTMS 0 0 0 29921 4066.9970703125 0.5083945239800947 155 -1.14849853515625 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88539.1 NaN 23224 6696 29921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29957 118.52 NaN 11390 35 0 3084.5 0.411 -1 MDLWHMEM 8 15 570.712585531351 NaN 0 570.712646484375 PEAK HCD FTMS 0 0 0 29956 3908.92529296875 0.5743439651755303 1 -0.00795745849609375 1 3 Oxidation (M) _M(Oxidation (M))DLWHM(Oxidation (M))EM(Oxidation (M))_ ENST00000369405.7_1_10:114205145-114205280:-|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89035.6 NaN 23225 6730 29956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29990 118.76 NaN 26701 35 0 5471 0.411 + 692 APWGKRGW 8 35 479.25818478030567 NaN 0 479.2578430175781 PEAK HCD FTMS 0 0 0 29989 3884.43115234375 0.4423550506327734 275 NaN 1 Unmodified _APWGKRGW_ ENST00000460725.5_1_2:113955061-113955313:+|nuORF 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102864.2 NaN 23226 6762 29989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 29994 118.78 NaN 16566 35 0 5988 0.411 -1 RLLRFSRM 8 19 547.8157904574447 NaN 0 547.8159790039062 PEAK HCD FTMS 0 0 0 29993 4442.65380859375 0.558158356638612 5 -0.03733062744140625 1 Oxidation (M) _RLLRFSRM(Oxidation (M))_ ENSG00000198515|ENST00000514170|CNGA1 2.302733041254933 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83009 NaN 23227 6765 29993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30002 118.83 NaN 37884 35 0 9212.6 0.411 -1 0 28 471.5953693441574 2352.940464387787 5 471.7951965332031 MULTI HCD FTMS 0 0 0 30001 13519.2197265625 0.7496105931232852 92 -0.6851043701171875 1 NaN NaN 1 Y 1 -1 3.0989 0 0 0.13171 0 0 1864.1422293797775 322.70282922916255 2186.8450586089402 0 0 0 0 0 0 0 0 0 Y 0.13171 - 1 + NaN NaN 87315 NaN 23228 6772 30001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30006 118.86 NaN 12934 35 0 2497.9 0.411 + -1 DQGLNEMEM 9 20 570.7127397626575 NaN 0 570.7124633789062 PEAK HCD FTMS 0 0 0 30005 3660.378173828125 0.5631029976581113 5 -0.03751373291015625 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))DQGLNEM(Oxidation (M))EM(Oxidation (M))_ REV__ENST00000593308.1_1_19:49127732-49127816:+|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86792.8 NaN 23229 6775 30005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30029 119.02 NaN 18744 35 0 5026.7 0.411 + 30238 VIRFRVMK 8 25 524.8268432617188 NaN 0 524.8268432617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VIRFRVMK_ REV__ENST00000533778.6_1_11:125496395-125496497:+|nuORF 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86143.2 NaN 23230 6797 30028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30039 119.09 NaN 16233 35 0 5727.7 0.411 + 28012 TFSLVLWKT 9 19 547.8157904574447 NaN 0 547.816162109375 PEAK HCD FTMS 0 0 0 30038 4140.06396484375 0.5201421039212987 44 -0.32584381103515625 1 Unmodified _TFSLVLWKT_ ENST00000443439.6_2_5:96129606-96129657:-|nuORF 1.844237919475145 0.28630992268396543 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103344.6 NaN 23231 6806 30038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30051 119.17 NaN 8717.7 35 0 1987.3 0.411 + -1 CCQCWCIGL 9 15 600.2291259765625 NaN 0 600.2291259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))QC(Carbamidomethyl (C))WCIGL_ REV__ENSG00000105699|ENST00000605618|LSR;REV__nc|ENSG00000105699|Q86X29-2|LSR;REV__nc|ENSG00000105699|Q86X29-3|LSR;REV__nc|ENSG00000105699|Q86X29-4|LSR;REV__nc|ENSG00000105699|Q86X29|LSR 0.6014990680409731 0.29233206172879045 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91693.9 NaN 23232 6817 30050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30055 119.19 NaN 16197 35 0 3969.8 0.411 + 32742 WQRGRKFL 8 17 545.818359375 NaN 0 545.818359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _WQRGRKFL_ ENSG00000169905|ENST00000609928|TOR1AIP2 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96163.7 NaN 23233 6820 30054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30061 119.23 NaN 12599 35 0 2404.2 0.411 + -1 FYMCTEFW 8 25 600.2295532226562 NaN 0 600.2295532226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _FYM(Oxidation (M))C(Carbamidomethyl (C))TEFW_ REV__ENSG00000134504|ENST00000580059|KCTD1 0.6903765706972694 0.38822285293237185 1 E 1 -1 1.5938 0 0 0.1331 0 0 606.2764893537125 459.10044275455317 1065.3769321082657 0 0 0 0 0 0 0 0 0 E 0.1331 + + 1 + NaN NaN 100967.5 NaN 23234 6825 30060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30085 119.4 NaN 15526 35 0 4870.3 0.411 + 12555 KSRRVKMW 8 17 545.8187978521904 NaN 0 545.818603515625 PEAK HCD FTMS 0 0 0 30084 1969.6851806640625 0.3438821952829863 1 -0.0079498291015625 1 Unmodified _KSRRVKMW_ ENST00000409434.5_1_2:99938658-99944097:-|nuORF 0.6014990680409731 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99922.1 NaN 23235 6848 30084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30094 119.46 NaN 32495 35 0 3791.9 0.327 + 5424 FHPVKRAC 8 25 479.25818478030567 NaN 0 479.2581481933594 PEAK HCD FTMS 0 0 0 30093 1888.603271484375 0.2150722108380314 368 NaN 1 Unmodified _FHPVKRAC_ REV__ENSG00000196184|ENST00000423932|OR10J1;REV__nc|ENSG00000196184|P30954|OR10J1 0.7936320650641473 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101027.5 NaN 23236 6856 30093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30095 119.46 NaN 18198 35 0 4847.1 0.261 -1 0 14 637.3859093689213 636.3786329023212 1 637.3863525390625 MULTI HCD FTMS 0 0 0 30093 1919.388671875 0.10746458670574813 -72 0.5344390869140625 2 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91830.8 NaN 23237 6856 30093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30107 119.54 NaN 13666 35 0 2326 0.411 -1 RPYCCHCF 8 28 600.2298960865099 NaN 0 600.2301635742188 PEAK HCD FTMS 0 0 0 30106 1520.571533203125 0.2555504394725345 -3 0.02185821533203125 1 3 Carbamidomethyl (C) _RPYC(Carbamidomethyl (C))C(Carbamidomethyl (C))HC(Carbamidomethyl (C))F_ ENSG00000163637|ENST00000638394|PRICKLE2 0.6903765706972694 0.38822285293237185 1 {I|L} 1 -1 2.7642 0 0 0.23065 0 0 581.2153330892323 501.1268404596313 1082.3421735488637 0 0 0 0 0 0 0 0 0 {I|L} 0.23065 - 1 + NaN NaN 90528.5 NaN 23238 6867 30106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30110 119.56 NaN 14306 35 0 5630.2 0.411 + 20910 PKKLRRRRRRA 11 17 498.3351135253906 NaN 0 498.3351135253906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PKKLRRRRRRA_ REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF 0 0.34212014346876374 1 W 1 -1 3.0989 0 0 0.31156 0 0 673.1587121076188 132.3993319147094 805.5580440223282 0 0 0 0 0 0 0 0 0 W 0.31156 - 1 + NaN NaN 88659.6 NaN 23239 6869 30109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30116 119.59 NaN 17387 35 0 5854.5 0.411 + 23408 RLHVERDY 8 19 544.285400390625 NaN 0 544.285400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RLHVERDY_ REV__ENSG00000142330|ENST00000391984|CAPN10;REV__ENST00000416591.5_1_2:241535566-241537362:+|nuORF;REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF;REV__nc|ENSG00000142330|Q9HC96-2|CAPN10;REV__nc|ENSG00000142330|Q9HC96-4|CAPN10 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84025.8 NaN 23240 6874 30115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30123 119.64 NaN 13936 35 0 5122.5 0.327 -1 0 13 607.208803575953 606.2015271093529 1 607.2094116210938 MULTI HCD FTMS 0 0 0 30122 12865.2548828125 0.6489983942069276 17 -0.1266937255859375 1 NaN NaN 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85465.6 NaN 23241 6880 30122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30124 119.64 NaN 26130 35 0 10808 0.261 + 28301 TLTLKRKKK 9 13 558.3849242401125 NaN 0 558.3858642578125 PEAK HCD FTMS 0 0 0 30122 1951.853759765625 0.49612916149580577 1 -0.009857177734375 2 Unmodified _TLTLKRKKK_ REV__ENSG00000175595|ENST00000311895|ERCC4 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85619.8 NaN 23242 6880 30122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30142 119.76 NaN 23360 35 0 5961.6 0.411 + 23381 RKTHILIL 8 26 497.3320868823452 NaN 0 497.3317565917969 PEAK HCD FTMS 0 0 0 30141 1540.88525390625 0.16568011456205717 -31 0.2319183349609375 1 Unmodified _RKTHILIL_ ENSG00000175264|ENST00000308064|CHST1 0 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96165.9 NaN 23243 6897 30141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30144 119.77 NaN 11891 35 0 2359.6 0.411 + -1 SCLFTQNTIP 10 23 590.7868252750162 NaN 0 590.8009033203125 PEAK HCD FTMS 0 0 0 30143 1715.558837890625 0.8599138780268307 1 -0.00803375244140625 1 Carbamidomethyl (C) _SC(Carbamidomethyl (C))LFTQNTIP_ REV__ENSG00000136878|ENST00000372429|USP20 1.1933415558491238 0.33916295405077446 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80374.1 NaN 23244 6898 30143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30148 119.8 NaN 7694.8 35 0 2225.3 0.411 + 22169 QKWLAEMEM 9 16 583.2735698388018 NaN 0 583.2738647460938 PEAK HCD FTMS 0 0 0 30147 1843.17529296875 0.2988427553438163 1 -0.0079498291015625 1 Unmodified _QKWLAEMEM_ SPTB|p.E868Q|1|0.31|ENSG00000070182|chr14:64793061-64793061|C/G|missense_variant 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91678.9 NaN 23245 6901 30147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30150 119.8 NaN 18643 35 0 5539.7 0.411 + 28177 TKKNKKKLK 9 24 558.3846632552144 NaN 0 558.3843383789062 PEAK HCD FTMS 0 0 0 30149 1717.7696533203125 0.3306747000680808 -2 0.0153045654296875 1 Unmodified _TKKNKKKLK_ REV__ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;REV__ENSG00000176208|ENST00000321990|ATAD5;REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF;REV__nc|ENSG00000176208|Q96QE3-2|ATAD5 0 0.29524684227089293 1 G 1 -1 5.4846 0 0 0.492 0 0 880.4780076854303 174.23670374088127 1054.7147114263116 0 0 0 0 0 0 0 0 0 G 0.492 - 1 + NaN NaN 87649.9 NaN 23246 6902 30149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30155 119.83 NaN 15939 35 0 5296 0.411 + 14259 LCKKSLSKTS 10 17 547.8156763945104 NaN 0 547.815673828125 PEAK HCD FTMS 0 0 0 30154 4761.1884765625 0.6943013526570736 22 -0.16582489013671875 1 Unmodified _LCKKSLSKTS_ REV__ENSG00000152076|ENST00000409943|CCDC74B;REV__ENSG00000163040|ENST00000409856|CCDC74A;REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF;REV__nc|ENSG00000152076|Q96LY2|CCDC74B;REV__nc|ENSG00000163040|Q96AQ1|CCDC74A 0 0.34018428902965525 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85922.2 NaN 23247 6906 30154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30162 119.88 NaN 7499.7 35 0 2384.1 0.411 -1 YKLIYCHME 9 14 628.794677734375 NaN 0 628.794677734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _YKLIYC(Carbamidomethyl (C))HME_ tr|U7SV38|U7SV38_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01117PE=4SV=1 0.5247636613948944 0.2927039108006614 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100071.1 NaN 23248 6912 30161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30173 119.95 NaN 32167 35 0 5366.6 0.411 + -1 SHCREMTY 8 32 550.2173288502728 NaN 0 550.2176513671875 PEAK HCD FTMS 0 0 0 30172 9806.876953125 0.4821236396010521 468 NaN 1 Carbamidomethyl (C),Oxidation (M) _SHC(Carbamidomethyl (C))REM(Oxidation (M))TY_ REV__ENSG00000142731|ENST00000270861|PLK4;REV__nc|ENSG00000142731|O00444-2|PLK4;REV__nc|ENSG00000142731|O00444-3|PLK4 0.6903765706972694 0.38822285293237185 1 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87665.8 NaN 23249 6922 30172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1 30175 119.96 NaN 25750 35 0 4865.7 0.411 + 21133 PPIARAIKK 9 22 497.3320868823452 NaN 0 497.3322448730469 PEAK HCD FTMS 0 0 0 30174 7746.3955078125 0.8329132178556533 -5 0.03717803955078125 1 Unmodified _PPIARAIKK_ nc|ENSG00000092199|P07910-4|HNRNPC 0.6014990680409731 0.29233206172879045 1 H 1 9 5.4846 0 0 0.55252 0 0 685.4579226887155 167.10743127994377 852.5653539686592 0 0 0 0 0 0 0 0 0 H 0.55252 - 1 + NaN NaN 91388.2 NaN 23250 6923 30174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3 12.013 NaN 41194 35 0 7599.6 0.411 -1 SRSCGCFMRC 10 32 421.83319091796875 NaN 0 421.83319091796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _SRSC(Carbamidomethyl (C))GC(Carbamidomethyl (C))FMRC_ ENST00000562306.5_1_15:62534969-62535489:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115104.1 NaN 0 1 2 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7 12.035 NaN 31778 35 0 6713.1 0.411 + 2232 DKWNDKPKNQ 10 26 424.88141606627084 1271.6224187990126 3 424.8033447265625 MULTI HCD FTMS 0 0 0 6 3357.39697265625 0.7583910035365372 -7 NaN 1 Unmodified _DKWNDKPKNQ_ CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant;ENSG00000198824|ENST00000361283|CHAMP1 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104921.5 NaN 1 4 6 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9 12.043 NaN 30908 35 0 4842.6 0.411 + 30950 VRLSTTASLVT 11 25 574.3375935285696 NaN 0 574.3369750976562 PEAK HCD FTMS 0 0 0 8 1505.89208984375 0.3566072311067604 -4 0.030653953552246094 1 Unmodified _VRLSTTASLVT_ REV__ENSG00000157426|ENST00000205214|AASDH;REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF;REV__ENST00000514745.5_1_4:57219701-57248665:-|nuORF;REV__nc|ENSG00000157426|Q4L235-2|AASDH;REV__nc|ENSG00000157426|Q4L235-3|AASDH;REV__nc|ENSG00000157426|Q4L235-4|AASDH 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115157.9 NaN 2 5 8 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12 12.059 NaN 122120 35 0 21137 0.411 + -1 KLEALGMSYF 10 36 400.8708019573641 NaN 0 400.8592224121094 PEAK HCD FTMS 0 0 0 11 3560.917724609375 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KLEALGMSYF_ REV__ENST00000261601.7_1_18:211201-211261:+|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122903.6 NaN 3 7 11 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15 12.075 NaN 31362 35 0 5765.3 0.411 -1 RCSHSKKLCP 10 29 424.88141606627084 1271.6224187990126 3 424.7936096191406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))SHSKKLC(Carbamidomethyl (C))P_ ENSG00000165197|ENST00000297904|VEGFD 0.6976657623105312 0.47161084886498755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 110492.2 NaN 4 9 14 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24 12.135 NaN 41821 35 0 5289.9 0.411 + 26498 SVFPGTKWGVW 11 37 421.88894760043587 1262.6450134015076 3 421.85687255859375 MULTI HCD FTMS 0 0 0 23 1321.97802734375 1 0 0 1 Unmodified _SVFPGTKWGVW_ ENST00000418310.5_1_7:73536047-73536155:+|nuORF 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101968.1 NaN 5 17 23 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 35 12.209 NaN 30601 35 0 7909.6 0.411 + 5005 FCNALLKIPK 10 23 573.8412475585938 NaN 0 573.8412475585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FCNALLKIPK_ REV__AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant;REV__ENSG00000126070|ENST00000373191|AGO3 0.4007161486938917 0.3398413315442166 2 W 1 -1 3.4949 0 0 0.30505 0 0 554.8263076154311 401.7513521783813 956.5776597938125 0 0 0 0 0 0 0 0 0 W 0.30505 - 1 + NaN NaN 111791.3 NaN 6 27 34 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 44 12.269 NaN 39020 35 0 6441.2 0.411 + 14400 LEKIKLVLPVL 11 23 422.2899465070531 NaN 0 421.8335266113281 PEAK HCD FTMS 0 0 0 43 1770.6202392578125 1 0 0 1 Unmodified _LEKIKLVLPVL_ REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90534.6 NaN 7 35 43 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 63 12.403 NaN 37474 35 0 5862.4 0.411 -1 0 31 421.3287230533797 NaN 0 421.32867431640625 PEAK HCD FTMS 0 0 0 62 9032.0234375 0.28849136552656207 -133 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90100.2 NaN 8 53 62 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 80 12.521 NaN 39532 35 0 6619.6 0.412 -1 0 29 421.3287230533797 NaN 0 421.3287353515625 PEAK HCD FTMS 0 0 0 79 8218.560546875 0.2625085919271008 -117 NaN 1 NaN NaN 2 N 1 -1 0.9691 0 0 0.11528 0 0 420.76024654445627 302.8203524225219 723.5805989669782 0 0 0 0 0 0 0 0 0 N 0.11528 - 1 + NaN NaN 93490.1 NaN 9 69 79 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 98 12.65 NaN 41926 35 0 7280.5 0.411 -1 0 25 421.3216334090491 NaN 0 421.3285827636719 PEAK HCD FTMS 0 0 0 97 3954.983154296875 0.5637035446669232 -10 0.07561969757080078 1 NaN NaN 2 D 1 -1 2.4743 0 0 0.29433 0 0 540.4953348339202 182.09099756412346 722.5863323980436 0 0 0 0 0 0 0 0 0 D 0.29433 - 1 + NaN NaN 97549.7 NaN 10 86 97 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 117 12.783 NaN 44371 35 0 8610.2 0.411 -1 0 37 421.3216334090491 NaN 0 421.3288269042969 PEAK HCD FTMS 0 0 0 116 3594.77392578125 0.5123629419350528 8 -0.059803009033203125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100624.5 NaN 11 104 116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 185 13.278 NaN 22669 35 0 4288.5 0.411 + -1 RHGCCCCCC 9 24 424.7922801038522 NaN 0 424.7809753417969 PEAK HCD FTMS 0 0 0 184 1694.990478515625 0.2643455454681903 9 -0.06786727905273438 1 5 Carbamidomethyl (C) _RHGC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C_ REV__ENST00000483722.1_1_6:41166134-41168799:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98529.8 NaN 12 171 184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 189 13.301 NaN 23082 35 0 4581.5 0.411 + -1 TEYMNFFCFC 10 22 478.84193420661984 NaN 0 478.96197509765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C),Oxidation (M) _TEYM(Oxidation (M))NFFC(Carbamidomethyl (C))FC(Carbamidomethyl (C))_ REV__ENST00000589123.5_2_19:3467023-3467371:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90156.6 NaN 13 174 188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 196 13.346 NaN 11128 35 0 2023.3 0.411 -1 YLCVVCQCNM 10 13 624.7476592273654 NaN 0 624.748046875 PEAK HCD FTMS 0 0 0 195 3298.244140625 0.4344833765567322 -1 0.0073604583740234375 1 Carbamidomethyl (C),Oxidation (M) _YLC(Carbamidomethyl (C))VVCQCNM(Oxidation (M))_ ENST00000256255.10_2_8:29921132-29921228:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90129.4 NaN 14 180 195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 281 13.969 NaN 21613 35 0 5160.6 0.411 + 4012 ERQKRVYWTY 10 25 476.91624636337195 NaN 0 476.9164123535156 PEAK HCD FTMS 0 0 0 280 5354.796875 0.6390971887617605 4 -0.030236244201660156 1 Unmodified _ERQKRVYWTY_ REV__ENSG00000135100|ENST00000257555|HNF1A;REV__ENSG00000275410|ENST00000617811|HNF1B;REV__HNF1A|p.P291Qfs*51|1|0.38|ENSG00000135100|chr12:120994312-120994312|G/-|frameshift_variant;REV__nc|ENSG00000135100|P20823-2|HNF1A;REV__nc|ENSG00000135100|P20823-3|HNF1A;REV__nc|ENSG00000135100|P20823-4|HNF1A;REV__nc|ENSG00000135100|P20823-5|HNF1A;REV__nc|ENSG00000135100|P20823-6|HNF1A;REV__nc|ENSG00000135100|P20823-7|HNF1A;REV__nc|ENSG00000135100|P20823|HNF1A;REV__nc|ENSG00000275410|P35680-2|HNF1B;REV__nc|ENSG00000275410|P35680-3|HNF1B;REV__nc|ENSG00000275410|P35680-4|HNF1B 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89997.3 NaN 15 264 280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 333 14.346 NaN 26865 35 0 4282.2 0.411 + -1 WCEEGSLA 8 17 476.1982934146933 NaN 0 476.19830322265625 PEAK HCD FTMS 0 0 0 332 4973.5517578125 0.7109383408329966 -22 0.16271018981933594 1 Carbamidomethyl (C) _WC(Carbamidomethyl (C))EEGSLA_ REV__ENSG00000103534|ENST00000542583|TMC5;REV__ENST00000567478.5_1_16:19467998-19503571:+|nuORF;REV__nc|ENSG00000103534|Q6UXY8-2|TMC5;REV__nc|ENSG00000103534|Q6UXY8-3|TMC5;REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93630.4 NaN 16 315 332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 361 14.545 NaN 20469 35 0 6489.3 0.411 -1 RRRLMKRL 8 18 572.8644469311868 NaN 0 572.8643798828125 PEAK HCD FTMS 0 0 0 360 6908.71533203125 0.604726371774006 -75 0.5533237457275391 1 Oxidation (M) _RRRLM(Oxidation (M))KRL_ ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95952.6 NaN 17 342 360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 365 14.568 NaN 34081 35 0 3335.7 0.327 + 5044 FDLTFSPRWPY 11 34 476.902985909156 NaN 0 476.91607666015625 PEAK HCD FTMS 0 0 0 364 1574.62158203125 0.7514481307791099 11 -0.0836496353149414 1 Unmodified _FDLTFSPRWPY_ REV__ENSG00000122145|ENST00000373296|TBX22;REV__nc|ENSG00000122145|Q9Y458-2|TBX22 0.09484139111097674 0.34185110575506755 2 V 1 -1 0.48455 0 0 0.050909 0 0 358.95738675796196 490.75238977603755 849.7097765339995 0 0 0 0 0 0 0 0 0 V 0.050909 - 1 + NaN NaN 95148.8 NaN 18 345 364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 366 14.573 NaN 43954 35 0 10203 0.261 + 5495 FKGRWFWRVR 10 26 479.9391129988097 1436.7955095966292 3 480.2731628417969 MULTI HCD FTMS 0 0 0 364 5628.6943359375 0.7545549427729563 -5 0.03746318817138672 2 Unmodified _FKGRWFWRVR_ ENSG00000102996|ENST00000219271|MMP15;MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant 0.15932191953741626 0.4744603884079788 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89474.1 NaN 19 345 364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 387 14.718 NaN 22565 35 0 4322.3 0.411 + 32471 WEKMVKKVSRF 11 19 479.9391129988097 1436.7955095966292 3 479.9390563964844 MULTI HCD FTMS 0 0 0 386 3597.707275390625 0.29199503092376916 12 -0.0897836685180664 1 Unmodified _WEKMVKKVSRF_ ENSG00000239305|ENST00000237455|RNF103;ENST00000463333.6_1_2:86831591-86842310:-|nuORF 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95422.9 NaN 20 365 386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 399 14.8 NaN 21298 35 0 3614.1 0.411 + 20886 PITTSTVCIYA 11 29 584.8001735119126 NaN 0 584.7882080078125 PEAK HCD FTMS 0 0 0 398 3675.793212890625 0.5327607895562806 -3 0.022119522094726562 1 Unmodified _PITTSTVCIYA_ REV__OR7A5|p.D70Y|1|0.28|ENSG00000188269|chr19:14828034-14828034|C/A|missense_variant 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101315.2 NaN 21 376 398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 406 14.845 NaN 31687 35 0 5997.7 0.411 + -1 HFCARCAS 8 37 476.19827706857 NaN 0 476.1983947753906 PEAK HCD FTMS 0 0 0 405 3663.4072265625 0.5138688941041422 -18 0.13415050506591797 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 2 {I|L} 1 -1 0.088644 0 0 0.0093272 0 0 703.4576523043291 130.81313501529533 834.2707873196244 0 0 0 0 0 0 0 0 0 {I|L} 0.0093272 - 1 + NaN NaN 107164 NaN 22 382 405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 465 15.273 NaN 14395 35 0 2665.3 0.411 + 9749 HYEDYGDYW 9 25 624.2361074464073 NaN 0 624.2363891601562 PEAK HCD FTMS 0 0 0 464 1800.264892578125 0.39040138695776433 -9 0.06630897521972656 1 Unmodified _HYEDYGDYW_ ENSG00000130234|ENST00000252519|ACE2 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99672.7 NaN 23 440 464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 467 15.281 NaN 82297 35 0 31772 0.411 + 33621 YITTNAEKF 9 22 543.7768783414301 1085.5392037496601 2 543.7772827148438 MULTI HCD FTMS 0 0 0 466 22679.33203125 0.3321531205262175 -6 0.044814109802246094 1 Unmodified _YITTNAEKF_ REV__ENSG00000184005|ENST00000328299|ST6GALNAC3;REV__nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107785.9 NaN 24 441 466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 470 15.296 NaN 11171 35 0 2448.8 0.411 + -1 NCIKGFLREI 10 19 625.34033203125 NaN 0 625.34033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _NC(Carbamidomethyl (C))IKGFLREI_ REV__ENSG00000137364|ENST00000309983|TPMT 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89428.1 NaN 25 443 469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 472 15.304 NaN 25492 35 0 4733 0.411 -1 LLHMLLKKG 9 18 547.8426330867933 NaN 0 547.8426513671875 PEAK HCD FTMS 0 0 0 471 5929.05322265625 0.65636697044184 5 -0.03838157653808594 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLHMLLKKG_ ENST00000471979.6_1_4:20728945-20754208:+|nuORF;ENST00000503585.5_1_4:20728945-20729086:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90888.3 NaN 26 444 471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 474 15.312 NaN 22382 35 0 5612.8 0.411 + -1 RPMKLVWL 8 21 529.813271521047 NaN 0 529.8013916015625 PEAK HCD FTMS 0 0 0 473 1751.51708984375 0.9993252596649866 -2 0.01601409912109375 1 Oxidation (M) _RPM(Oxidation (M))KLVWL_ REV__ENST00000511521.1_1_4:78784023-78784152:+|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96396.7 NaN 27 445 473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 479 15.343 NaN 27659 35 0 4094.1 0.411 + 4356 EWDNDFEDIRS 11 26 475.8697669596896 NaN 0 475.869873046875 PEAK HCD FTMS 0 0 0 478 4415.61279296875 0.5287392242891422 -58 0.4308891296386719 1 Unmodified _EWDNDFEDIRS_ ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL 0.40826533853263924 0.34096201227758716 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117522.8 NaN 28 449 478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 487 15.401 NaN 67127 35 0 12729 0.327 -1 TVFMWMKK 8 27 543.7768783414301 1085.5392037496601 2 544.2792358398438 MULTI HCD FTMS 0 0 0 486 8588.2109375 0.30712221779091187 10 -0.0786275863647461 1 Oxidation (M) _TVFM(Oxidation (M))WMKK_ ENST00000316170.7_2_6:10556969-10557068:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92956.1 NaN 29 456 486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 488 15.405 NaN 27819 35 0 8280.2 0.261 + 18511 MRSYLRRA 8 14 526.7929077148438 NaN 0 526.7929077148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _MRSYLRRA_ REV__ENSG00000160360|ENST00000440944|GPSM1;REV__nc|ENSG00000160360|Q86YR5-3|GPSM1;REV__nc|ENSG00000160360|Q86YR5|GPSM1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94403.6 NaN 30 456 486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 490 15.411 NaN 54253 35 0 11702 0.411 + 28842 TVHERCVSR 9 28 543.7768783414301 1085.5392037496601 2 543.7767944335938 MULTI HCD FTMS 0 0 0 489 16494.32421875 0.24156978048030345 10 -0.07608699798583984 1 Unmodified _TVHERCVSR_ ENSG00000058866|ENST00000265022|DGKG;ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-2|DGKG;nc|ENSG00000058866|P49619-3|DGKG 5.296884461304476 0.3108627248283497 2 R 1 8 16.99 0 0 1.5651 0 0 911.4292774574711 0 911.4292774574711 0 -4.436974992327123 -4.436974992327123 0 0 0 0 0 0 + R 1.5651 + + 5 + NaN NaN 97035.3 NaN 31 457 489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 495 15.441 NaN 48497 35 0 6086.7 0.411 + 28843 TVHERCVSR 9 32 543.7768783414301 1085.5392037496601 2 543.775390625 MULTI HCD FTMS 0 0 0 494 20353.5 0.29808984362127866 14 -0.10691642761230469 1 Unmodified _TVHERCVSR_ ENSG00000058866|ENST00000265022|DGKG;ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-2|DGKG;nc|ENSG00000058866|P49619-3|DGKG 8.155526934196011 0.2891920862272901 2 {[TV]|[{I|L}S]}HE 4 5 20.005 0 0 1.8429 0 0 0 616.2937723918245 616.2937723918245 5.400990676322905 0 0 0 0 0.3807196863200844 0 0 0 + {[TV]|[{I|L}S]}HE 1.8429 + + 6 + NaN NaN 99258.6 NaN 32 461 494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 499 15.464 NaN 29761 35 0 3730.7 0.411 -1 DGEALMYH 8 24 476.19821977369054 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 498 5834.05517578125 0.5042507127076137 -94 0.7085170745849609 1 Oxidation (M) _DGEALM(Oxidation (M))YH_ ENSG00000182158|ENST00000330387|CREB3L2;ENST00000468127.1_1_7:137684448-137686451:-|nuORF;nc|ENSG00000182158|Q70SY1-2|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2 0.7936320650641473 0.38822285293237185 2 P 1 -1 1.9897 0 0 0.20936 0 0 485.2089872995311 365.09137903385005 850.3003663333811 0 0 0 0 0 0 0 0 0 P 0.20936 - 1 + NaN NaN 96302.2 NaN 33 464 498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 504 15.494 NaN 31813 35 0 5344.3 0.411 + 4120 ETGAGKHVPR 10 28 526.2855449748213 1050.5565370164425 2 526.2862548828125 MULTI HCD FTMS 0 0 0 503 8904.912109375 0.7191643505885099 -1 0.0074138641357421875 1 Unmodified _ETGAGKHVPR_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000475683.1_1_2:220116706-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 2.9952420565917617 0.4594494122822477 2 V[RP] 3 7 8.9524 0 0 0.85216 0 0 680.3252270572613 0 680.3252270572613 0 3.4678748622465623 0 0 0 0 0 0 0 + V[RP] 0.85216 + + 5 + NaN NaN 95628.9 NaN 34 468 503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 509 15.524 NaN 17187 35 0 3121.7 0.412 + -1 LMYIPLEEI 9 18 589.8044745473759 1177.5943961615517 2 589.8045654296875 MULTI HCD FTMS 0 0 0 508 5374.45703125 0.20443590494909686 -6 0.044960975646972656 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LM(Oxidation (M))YIPLEEI_ REV__nc|ENSG00000164932|Q96CG8-2|CTHRC1 0 0.3510170533115441 2 C 1 -1 0.48455 0 0 0.041147 0 0 552.8208498742455 518.7272432916624 1071.5480931659079 0 0 0 0 0 0 0 0 0 C 0.041147 - 1 + NaN NaN 97586.7 NaN 35 472 508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 511 15.533 NaN 31738 35 0 6797.1 0.411 + 7890 FYVKITDNS 9 28 543.7768783414301 1085.5392037496601 2 543.7776489257812 MULTI HCD FTMS 0 0 0 510 4264.2705078125 0.06245293088818427 25 -0.19096851348876953 1 Unmodified _FYVKITDNS_ REV__ENSG00000147432|ENST00000289957|CHRNB3 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88361.1 NaN 36 473 510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 519 15.585 NaN 20136 35 0 5259.7 0.327 + 28828 TVEISLYDR 9 13 548.2874846320841 1094.560416330968 2 548.7889404296875 MULTI HCD FTMS 0 0 0 518 4167.34521484375 0.7376712634830329 1 -0.009939193725585938 1 Unmodified _TVEISLYDR_ REV__ENST00000302313.9_1_3:39136340-39136397:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93354.5 NaN 37 480 518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 520 15.589 NaN 9386.2 35 0 3345.6 0.261 -1 YWQPILTKM 9 8 598.3126220703125 NaN 0 598.3126220703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YWQPILTKM(Oxidation (M))_ ENSG00000175354|ENST00000309660|PTPN2 0 0.29524684227089293 2 P 1 -1 5.4846 0 0 0.45911 0 0 871.5610523908218 222.97211633853752 1094.5331687293594 0 0 0 0 0 0 0 0 0 P 0.45911 + + 1 + NaN NaN 92547.6 NaN 38 480 518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 530 15.654 NaN 26928 35 0 5010.6 0.327 + 9582 HRTQPSHDL 9 24 545.772974657659 1089.531396382118 2 545.7733764648438 MULTI HCD FTMS 0 0 0 529 5667.62744140625 0.11284181618913272 -11 0.0835733413696289 1 Unmodified _HRTQPSHDL_ REV__ENST00000342409.3_1_10:14050444-14050501:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91814.7 NaN 39 489 529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 531 15.658 NaN 28152 35 0 4942.7 0.261 + 26357 SSKESSRILDG 11 25 589.8044745473759 1177.5943961615517 2 590.305908203125 MULTI HCD FTMS 0 0 0 529 1594.1474609375 0.1275283197356572 5 -0.039496421813964844 2 Unmodified _SSKESSRILDG_ TCOF1|p.S1050L|1|0.31|ENSG00000070814|chr5:150389989-150389989|C/T|missense_variant 1.0714618166137932 0.41422159895841093 2 N 1 11 8.7371 0 0 0.74195 0 0 588.7925295617455 471.7227877252563 1060.5153172870018 0 0 0 0 0 0 0 0 0.3252574989159953 N 0.74195 - 4 + NaN NaN 99155.8 NaN 40 489 529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 537 15.693 NaN 30184 35 0 5602.4 0.411 + -1 HFCARCAS 8 24 476.19821977369054 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 536 7052.5556640625 0.6095684927315429 -64 0.4942169189453125 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98337.8 NaN 41 494 536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 544 15.738 NaN 35512 35 0 6339.4 0.411 + -1 FMMHPGCL 8 27 476.19821977369054 NaN 0 476.1981201171875 PEAK HCD FTMS 0 0 0 543 5338.74267578125 0.4614397221337126 -58 0.44960498809814453 1 Oxidation (M) _FM(Oxidation (M))MHPGCL_ REV__ENSG00000165197|ENST00000297904|VEGFD 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106147.7 NaN 42 500 543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 550 15.776 NaN 37569 35 0 5668.7 0.327 + 25822 SLQNHNHQL 9 21 545.772974657659 1089.531396382118 2 545.7728271484375 MULTI HCD FTMS 0 0 0 549 20319.794921875 0.40456480022373736 5 -0.040238380432128906 1 Unmodified _SLQNHNHQL_ ENSG00000103549|ENST00000324685|RNF40;ENSG00000155827|ENST00000389120|RNF20;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-3|RNF40;nc|ENSG00000103549|O75150-4|RNF40 13.042465956692817 0.2476723265019929 2 HQ{I|L} 3 6 29.693 0 0 2.7253 0 0 693.3169422834 0 693.3169422834 0 19.235162698957282 0 0 0 0.5 0 0 0 + HQ{I|L} 2.7253 + + 7 NaN NaN 103153 NaN 43 505 549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 551 15.78 NaN 27641 35 0 10732 0.261 + 32746 WQTRCFLR 8 16 555.2881658101842 1108.5617786871683 2 555.2883911132812 MULTI HCD FTMS 0 0 0 549 9507.0322265625 0.6637253593212865 -7 0.05243110656738281 2 Unmodified _WQTRCFLR_ REV__ENSG00000140285|ENST00000267843|FGF7;REV__nc|ENSG00000140285|P21781-2|FGF7 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92496.4 NaN 44 505 549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 553 15.786 NaN 35965 35 0 5030.6 0.412 + 28645 TRPRCPVQT 9 30 529.2819127168161 1056.5492725004322 2 529.28173828125 MULTI HCD FTMS 0 0 0 552 1052.3115234375 0.1545768655066209 7 -0.053872108459472656 1 Unmodified _TRPRCPVQT_ ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B 1.4819007175156935 0.3397831423917744 2 P 1 8 6.9897 0 0 0.66156 0 0 346.1893004318759 610.2918795221311 956.4811799540071 0 0 0 0 0 0 0 0 0 + P 0.66156 + + 2 + NaN NaN 99826.4 NaN 45 506 552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 558 15.816 NaN 41201 35 0 5377.8 0.411 + 23554 RPDAEKKEM 9 32 552.2792917045517 1102.5440304759034 2 552.2792358398438 MULTI HCD FTMS 0 0 0 557 9842.154296875 1 0 0 1 Unmodified _RPDAEKKEM_ ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF 3.2813086475875832 0.32614229037259 2 [RP]D 3 6 8.9524 0 0 0.81198 0 0 0 731.3404226480314 731.3404226480314 8.952424927286843 0 0 0 0 0 0 0 0 + [RP]D 0.81198 + + 3 NaN NaN 98521.3 NaN 46 510 557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 561 15.832 NaN 22662 35 0 5799.4 0.411 + 4252 EVHDKGALR 9 24 512.7803956261813 1023.5462383191626 2 512.77978515625 MULTI HCD FTMS 0 0 0 560 4272.12548828125 0.5265645279968358 -2 0.015553474426269531 1 Unmodified _EVHDKGALR_ ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant 3.5964929083625545 0.32375295897743744 2 DK 2 7 9.464 0 0 0.92462 0 0 365.17100746154375 412.2313631647094 777.4023706262532 0 0 0 0 0 0 0 0 0 + DK 0.92462 + + 3 + NaN NaN 95537.9 NaN 47 512 560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 567 15.869 NaN 23323 35 0 6267.3 0.411 + 12490 KREYEKEKE 9 20 619.8206254237689 NaN 0 619.8208618164062 PEAK HCD FTMS 0 0 0 566 17284.125 0.6449158432992744 310 -2.4389114379882812 1 Unmodified _KREYEKEKE_ REV__KCTD4|p.G16R|1|0.24|ENSG00000180332|chr13:45194522-45194522|C/T|missense_variant 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92476.8 NaN 48 517 566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 571 15.892 NaN 22791 35 0 5491.6 0.411 -1 WYSCRRAI 8 22 556.2781563258836 NaN 0 556.2785034179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _WYSC(Carbamidomethyl (C))RRAI_ sp|P03198|DPOL_EBVB9DNApolymerasecatalyticsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF5PE=1SV=1 0.6903765706972694 0.38822285293237185 2 G 1 -1 0.088644 0 0 0.007982 0 0 537.744043509386 512.7412813775999 1050.4853248869858 0 0 0 0 0 0 0 0 0 G 0.007982 - 1 + NaN NaN 98881.6 NaN 49 520 570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 573 15.9 NaN 15899 35 0 2694.4 0.411 -1 MKKMKLQEI 9 13 590.8253412873906 NaN 0 590.8256225585938 PEAK HCD FTMS 0 0 0 572 3835.85791015625 0.8591279757601898 1 -0.008030891418457031 1 2 Oxidation (M) _M(Oxidation (M))KKM(Oxidation (M))KLQEI_ ENST00000397772.2_1_20:32500507-32500861:-|nuORF 0 0.29524684227089293 2 S 1 -1 2.4743 0 0 0.20975 0 0 607.7778665574 481.80625330142817 1089.5841198588282 0 0 0 0 0 0 0 0 0 S 0.20975 - 1 + NaN NaN 95880.5 NaN 50 521 572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 579 15.938 NaN 45906 35 0 6606 0.411 + 2747 DWIVRSRPT 9 22 565.3071788427605 NaN 0 565.3077392578125 PEAK HCD FTMS 0 0 0 578 8489.2236328125 0.9824600840784882 -1 0.007367134094238281 1 Unmodified _DWIVRSRPT_ ENST00000323011.7_1_18:63476946-63481738:+|nuORF 1.4819007175156935 0.28806575819904134 2 N 1 9 8.6006 0 0 0.76206 0 0 564.737696453296 446.79123865299067 1011.5289351062868 0 0 0 0 0 0.3494850021680094 0 0 0.28872548999643577 N 0.76206 - 1 + NaN NaN 96270.1 NaN 51 526 578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 586 15.983 NaN 35261 35 0 5388.9 0.411 + -1 HFCARCAS 8 33 476.19821977369054 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 585 6173.84326171875 0.5336193729861131 -26 0.1970081329345703 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98020 NaN 52 532 585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 590 16.006 NaN 26514 35 0 2917.1 0.411 + -1 LMIQFKFR 8 31 570.8150653245249 1139.6155777158497 2 570.8157348632812 MULTI HCD FTMS 0 0 0 589 8252.88671875 0.19414941666193408 -10 0.07526874542236328 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LM(Oxidation (M))IQFKFR_ REV__ENST00000399302.6_2_11:32955289-32955325:+|nuORF 2.302733041254933 0.5385759549224092 2 N 1 -1 9.1244 0 0 0.80065 0 0 569.750600764481 452.80695520572505 1022.5575559702061 0 0 0 0 0 0.4247425010840047 0 0 0.28872548999643577 N 0.80065 - 1 + NaN NaN 112709.1 NaN 53 535 589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 592 16.014 NaN 13526 35 0 3288.6 0.411 -1 CSEDNCTKSF 10 20 624.2362491570505 NaN 0 624.2359619140625 PEAK HCD FTMS 0 0 0 591 4831.552734375 0.8155728520207662 10 -0.074554443359375 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))SEDNC(Carbamidomethyl (C))TKSF_ ENSG00000166478|ENST00000396602|ZNF143;nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103721.3 NaN 54 536 591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 605 16.103 NaN 36764 35 0 5868.4 0.411 + -1 DWCEITAG 8 31 476.19821977369054 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 604 7848.96240234375 0.6784037459616752 -10 0.07370948791503906 1 Carbamidomethyl (C) _DWC(Carbamidomethyl (C))EITAG_ REV__DENND4C|p.E323*|1|0.22|ENSG00000137145|chr9:19296165-19296166|-/T|frameshift_variant;REV__ENSG00000137145|ENST00000434457|DENND4C;REV__ENST00000380437.8_1_9:19290781-19335045:+|nuORF;REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C;REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C;REV__nc|ENSG00000137145|Q5VZ89|DENND4C 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106694.7 NaN 55 548 604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 608 16.119 NaN 17264 35 0 2208.3 0.411 + -1 CEFMCYVF 8 28 586.2145276679706 NaN 0 586.2140502929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))EFM(Oxidation (M))C(Carbamidomethyl (C))YVF_ REV__ACER3|p.I102V|1|0.21|ENSG00000078124|chr11:76976325-76976325|A/G|missense_variant;REV__ENSG00000078124|ENST00000532485|ACER3;REV__ENST00000527508.1_1_11:76637608-76709863:+|nuORF;REV__ENST00000530334.5_1_11:76579304-76726162:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90496.2 NaN 56 550 607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 610 16.127 NaN 42303 35 0 5332.2 0.411 + 4291 EVNDRPVRR 9 32 570.8150653245249 1139.6155777158497 2 570.8154296875 MULTI HCD FTMS 0 0 0 609 20981.48828125 0.4935901641845002 6 -0.04849052429199219 1 Unmodified _EVNDRPVRR_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 6.723162845929126 0.3000504726104499 2 R 1 8 21.99 0 0 1.9296 0 0 965.5041865799107 0 965.5041865799107 0 19.771212547196622 0 0 0 0.5 0 0 0 + R 1.9296 + + 2 + NaN NaN 102452.7 NaN 57 551 609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 613 16.142 NaN 13274 35 0 1269.3 0.411 + 23682 RQKQWRSRL 9 23 629.3658654800997 NaN 0 629.3658447265625 PEAK HCD FTMS 0 0 0 612 4421.07470703125 0.8071214440247849 -13 0.09805870056152344 1 Unmodified _RQKQWRSRL_ REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82013.2 NaN 58 553 612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 616 16.158 NaN 43918 35 0 7631 0.327 + 4381 EWVPWEEL 8 32 544.2584846628596 1086.502416392519 2 544.2587280273438 MULTI HCD FTMS 0 0 0 615 8882.62890625 0.865616206619322 6 -0.046871185302734375 1 Unmodified _EWVPWEEL_ ENSG00000136159|ENST00000258662|NUDT15 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105756.8 NaN 59 555 615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 617 16.162 NaN 45991 35 0 11994 0.261 + 31152 VTYEMDHG 8 23 476.19821977369054 NaN 0 476.1981201171875 PEAK HCD FTMS 0 0 0 615 5533.89404296875 0.4783071004880807 -3 0.023050308227539062 2 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113099.6 NaN 60 555 615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 635 16.285 NaN 40333 35 0 5135.3 0.327 -1 0 21 532.7429316214877 1063.4713103097754 2 532.743408203125 MULTI HCD FTMS 0 0 0 634 24735.125 0.08522072953192575 -23 0.17435836791992188 1 NaN NaN 2 HV{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.9336 0 0 662.3198719709 0 662.3198719709 0 7.385606273598313 0 0 0 0.5 0 0 0 HV{M(Oxidation (M))|F} 2.9336 - 10 NaN NaN 87331.3 NaN 61 572 634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 636 16.29 NaN 45532 35 0 9552.3 0.261 + 12708 KWVMVPMM 8 22 511.2540011145997 NaN 0 511.25360107421875 PEAK HCD FTMS 0 0 0 634 9741.046875 1 0 0 2 Unmodified _KWVMVPMM_ ENSG00000196136|ENST00000393078|SERPINA3 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97654.3 NaN 62 572 634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 639 16.303 NaN 17410 35 0 5257.2 0.327 + 30782 VPRLWRARG 9 11 555.8358148834021 NaN 0 555.8360595703125 PEAK HCD FTMS 0 0 0 638 1798.831787109375 0.2945947255656603 11 -0.08458328247070312 1 Unmodified _VPRLWRARG_ REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87935.7 NaN 63 574 638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 640 16.307 NaN 35417 35 0 11868 0.261 + 33133 YEDIEALIG 9 23 511.75588940012346 NaN 0 511.7554626464844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YEDIEALIG_ ENSG00000197912|ENST00000645818|SPG7;ENST00000561911.5_1_16:89619423-89623498:+|nuORF;ENST00000565891.1_1_16:89622463-89623498:+|nuORF;ENST00000569720.1_1_16:89620122-89623498:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86841.7 NaN 64 574 638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 645 16.335 NaN 40897 35 0 5437.5 0.411 + 3839 EPHPGERAA 9 31 482.23558767854684 962.4566224238937 2 482.2354431152344 MULTI HCD FTMS 0 0 0 644 9374.2373046875 0.6846041118671372 2 -0.015514373779296875 1 Unmodified _EPHPGERAA_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT;nc|ENSG00000147813|Q6XQN6-3|NAPRT 2.9952420565917617 0.3283108881486655 2 EPH 3 6 26.198 0 0 2.722 0 0 0 596.2792232567072 596.2792232567072 19.20818753952375 0 0 0 0 0 0 0 0 + EPH 2.722 + + 5 + NaN NaN 109236.2 NaN 65 578 644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 653 16.387 NaN 11487 35 0 2461.9 0.412 + 22226 QMFHAHWFC 9 12 603.7527076315242 NaN 0 603.2941284179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _QMFHAHWFC_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94459.8 NaN 66 585 652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 656 16.403 NaN 31484 35 0 7568.3 0.411 + -1 AFNHHQWM 8 18 543.7340852446872 NaN 0 543.7340698242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _AFNHHQWM(Oxidation (M))_ REV__ENST00000379426.1_1_6:11576889-11576937:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97192.6 NaN 67 587 655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 658 16.411 NaN 351030 35 0 41857 0.411 -1 0 88 532.7429316214877 1063.4713103097754 2 532.7431030273438 MULTI HCD FTMS 0 0 0 657 236403.828125 0.8144897871731994 -7 0.05289649963378906 1 NaN NaN 2 {[QG]|[NA]}ESGRGQVT 10 -1 111.12 0 0 10.448 0 0 0 60.97451790265055 60.97451790265055 85.7735327287365 0 0 0 0 3.3424778212679485 1.3979400086720375 1.3243923658886185 2.221848749616356 {[QG]|[NA]}ESGRGQVT 10.448 - 1456 NaN NaN 188287.7 NaN 68 588 657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 663 16.441 NaN 24242 35 0 4733.5 0.411 + -1 MTPYKWIV 8 28 527.275350957779 NaN 0 527.2758178710938 PEAK HCD FTMS 0 0 0 662 4009.6083984375 0.4319336003866304 -3 0.02231597900390625 1 Oxidation (M) _M(Oxidation (M))TPYKWIV_ REV__ENSG00000117399|ENST00000310955|CDC20;REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86715.4 NaN 69 592 662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 666 16.457 NaN 25136 35 0 3916.4 0.411 + 23294 RHRLLLHF 8 25 546.330594958162 NaN 0 546.3306884765625 PEAK HCD FTMS 0 0 0 665 1988.091552734375 0.19587689348091059 -9 0.06926155090332031 1 Unmodified _RHRLLLHF_ REV__ENST00000292566.3_1_7:102100189-102105179:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101610 NaN 70 594 665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 673 16.502 NaN 24821 35 0 5859.1 0.411 + -1 QKYWVMLV 8 28 541.7883786075901 1081.56220428198 2 541.7879028320312 MULTI HCD FTMS 0 0 0 672 8017.87109375 0.6428055927836787 -10 0.07538223266601562 1 Oxidation (M) _QKYWVM(Oxidation (M))LV_ REV__DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;REV__DNAH8|p.L507Sfs*24|1|0.33|ENSG00000124721|chr6:38781276-38781277|-/C|frameshift_variant;REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 0.7936320650641473 0.540814922690045 2 W 1 -1 1.5938 0 0 0.14736 0 0 743.7345808462363 148.7195986383422 892.4541794845785 0 0 0 0 0 0 0 0 0 W 0.14736 + + 2 + NaN NaN 93563.3 NaN 71 600 672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 678 16.532 NaN 325710 35 0 38482 0.411 -1 0 75 532.7429316214877 1063.4713103097754 2 532.7430419921875 MULTI HCD FTMS 0 0 0 677 235221.84375 0.8104174580164704 9 -0.06921577453613281 1 NaN NaN 2 {[QG]|[NA]}ESGRGQVT 10 -1 101.59 0 0 9.5527 0 0 0 60.97546029297294 60.97546029297294 89.82447808893326 0 0 0 0 3.1677353201839438 1.3010299956639813 1.031234684152075 2.197621246364342 {[QG]|[NA]}ESGRGQVT 9.5527 - 781 NaN NaN 212014.8 NaN 72 604 677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 683 16.562 NaN 31274 35 0 3849.1 0.411 + 30894 VQSSLAITSN 10 21 510.2717327451397 1018.5289125570794 2 510.2718811035156 MULTI HCD FTMS 0 0 0 682 8653.6318359375 0.9301167490141811 1 -0.007978439331054688 1 Unmodified _VQSSLAITSN_ AluJr4_dup4313|chr3:128811130-128811275:-|1.2274320759575994|0.0007489705087858|10.68|520.0|11|3|anti-sense 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98749 NaN 73 608 682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 685 16.57 NaN 32210 35 0 5891.4 0.411 + -1 LLPMNRLM 8 29 510.2717327451397 1018.5289125570794 2 510.27203369140625 MULTI HCD FTMS 0 0 0 684 6542.216796875 0.7031759073901156 2 -0.015569686889648438 1 2 Oxidation (M) _LLPM(Oxidation (M))NRLM(Oxidation (M))_ REV__ENSG00000101825|ENST00000217939|MXRA5 0.6903765706972694 0.5409681170271811 2 P 1 -1 5.4846 0 0 0.53848 0 0 583.8152112404763 334.6272371881469 918.4424484286233 0 0 0 0 0 0 0 0 0 P 0.53848 + + 1 + NaN NaN 96426.6 NaN 74 609 684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 689 16.593 NaN 29423 35 0 4151 0.411 + 5422 FHLLLRHR 8 27 546.330594958162 NaN 0 546.3309936523438 PEAK HCD FTMS 0 0 0 688 6203.5595703125 0.6112062472602521 9 -0.06997871398925781 1 Unmodified _FHLLLRHR_ ENST00000292566.3_1_7:102100189-102105179:-|nuORF 2.302733041254933 0.38822285293237185 2 {I|L} 1 7 4.6041 0 0 0.42214 0 0 710.4532603735521 264.0793551080688 974.532615481621 0 0 0 0 0 0 0 0 0 + {I|L} 0.42214 + + 1 + NaN NaN 119496.9 NaN 75 612 688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 692 16.609 NaN 20469 35 0 2783.2 0.411 + 3386 EESQPAKKTY 10 22 590.7957333247969 1179.5769137163936 2 590.7955322265625 MULTI HCD FTMS 0 0 0 691 6574.0244140625 0.7342832613044734 -4 0.030452728271484375 1 Unmodified _EESQPAKKTY_ ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A 2.498486711656943 0.462078817294651 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95547.4 NaN 76 614 691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 694 16.617 NaN 24456 35 0 6095.4 0.411 + -1 LLSEVVIMK 9 25 524.3112609436081 NaN 0 524.3110961914062 PEAK HCD FTMS 0 0 0 693 5598.0927734375 0.7406061334253206 1 -0.008029937744140625 1 Oxidation (M) _LLSEVVIM(Oxidation (M))K_ REV__ENSG00000225830|ENST00000355832|ERCC6 1.844237919475145 0.28630992268396543 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.43991 0 0 745.5570483991318 137.99947534732658 883.5565237464583 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.43991 - 1 + NaN NaN 103101.3 NaN 77 615 693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 699 16.647 NaN 24630 35 0 5668.1 0.411 + 20478 PCCRLLLH 8 29 477.7534790353068 953.4924051374136 2 477.7533874511719 MULTI HCD FTMS 0 0 0 698 1936.16943359375 0.22046759239953853 1 -0.007978439331054688 1 Unmodified _PCCRLLLH_ REV__ENSG00000130589|ENST00000467148|HELZ2;REV__nc|ENSG00000130589|Q9BYK8-2|HELZ2;REV__nc|ENSG00000130589|Q9BYK8|HELZ2 0.6903765706972694 0.5409681170271811 2 K 1 -1 5.4846 0 0 0.57521 0 0 675.4481068969824 146.92952905826408 822.3776359552464 0 0 0 0 0 0 0 0 0 K 0.57521 - 1 + NaN NaN 96268.6 NaN 78 619 698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 701 16.655 NaN 158670 35 0 19706 0.411 -1 0 50 532.7429316214877 1063.4713103097754 2 532.7431030273438 MULTI HCD FTMS 0 0 0 700 126273.203125 0.4350531679401477 25 -0.195281982421875 1 NaN NaN 2 NAESGRGQV 9 -1 91.297 0 0 8.5848 0 0 0 162.0229891412719 162.0229891412719 82.88540967689293 0 0 0 0 3.1237125054200234 1.2218487496163564 0.3494850021680094 0.4247425010840047 NAESGRGQV 8.5848 - 303 + NaN NaN 130768.2 NaN 79 620 700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 703 16.663 NaN 249580 35 0 50028 0.411 + 27604 TAGRHGDDL 9 61 471.2251985031682 940.4358440731364 2 471.2251281738281 MULTI HCD FTMS 0 0 0 702 127584.75 0.1336637699011172 -12 0.09290885925292969 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 49.52724829834842 0.03223213920720493 2 [TA]{[NV]|[RG]}HGDD{I|L} 9 0 + 76.348 0 0 8.1184 8.1184 96.425 0 0 0 25.162574822053543 33.68440000316717 25.162574822053543 39.27440017027357 0 1.3494850021680094 2 0.6989700043360187 0 + + [TA]{[NV]|[RG]}HGDD{I|L};[TA]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[CS]AT{I|L};[TA]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}T{I|L} 8.1184;3.9422;3.2533 +;-;- + 140 NaN NaN 180038.6 NaN 80 621 702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 706 16.679 NaN 32751 35 0 6000.8 0.411 + 4257 EVHTKINTR 9 32 549.3063443708692 1096.5981358085382 2 549.3067626953125 MULTI HCD FTMS 0 0 0 705 9827.232421875 0.7677177410630652 -3 0.023637771606445312 1 Unmodified _EVHTKINTR_ ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-3|NSD3;nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3 4.897010918128616 0.31389406404703984 2 {NN|[MP]|[D{I|L}]|[EV]}H 3 6 10.458 0 0 0.95364 0 0 0 728.4053438775999 728.4053438775999 7.3586311141647816 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}H 0.95364 + + 4 + NaN NaN 91243.4 NaN 81 623 705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 708 16.687 NaN 22463 35 0 4977.2 0.411 + 7881 FYTMYNRK 8 20 561.7739671019424 NaN 0 561.773681640625 PEAK HCD FTMS 0 0 0 707 4515.6181640625 0.5261580843447251 46 -0.36147308349609375 1 Unmodified _FYTMYNRK_ ENSG00000178127|ENST00000318388|NDUFV2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91371.3 NaN 82 624 707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 713 16.717 NaN 85183 35 0 42621 0.327 -1 GWACCWDP 8 15 497.6808794149202 993.3472058966404 2 497.68109130859375 MULTI HCD FTMS 0 0 0 712 16375.572265625 0.41766569500351 -2 0.014741897583007812 1 Carbamidomethyl (C) _GWAC(Carbamidomethyl (C))CWDP_ ENST00000504223.1_1_4:8211385-8214524:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 93256.7 NaN 83 628 712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 714 16.722 NaN 42663 35 0 9365.2 0.261 + 2148 DGQKDAAPRA 10 25 514.7594455834163 1027.5043382336326 2 514.759033203125 MULTI HCD FTMS 0 0 0 712 11624.34765625 0.36659036124912575 -6 0.045894622802734375 2 Unmodified _DGQKDAAPRA_ ENSG00000157637|ENST00000374759|SLC38A10 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113894.5 NaN 84 628 712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 717 16.734 NaN 53489 35 0 10249 0.411 + 27588 TAEGTEENL 9 39 482.2164107508075 962.418268568415 2 482.2168884277344 MULTI HCD FTMS 0 0 0 716 16533.029296875 0.8894580616377276 -1 0.0073699951171875 1 Unmodified _TAEGTEENL_ ENSG00000172409|ENST00000533682|CLP1;nc|ENSG00000172409|Q92989-2|CLP1 3.5964929083625545 0.32375295897743744 2 D 1 9 8.2268 0 0 0.85481 0 0 462.5816119295462 381.79465662174067 844.3762685512869 0 0 0 0 0 0 0 0.4247425010840047 0 D 0.85481 - 4 + NaN NaN 119768.7 NaN 85 630 716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 720 16.75 NaN 35889 35 0 4469.7 0.327 -1 NMYGMFKK 8 28 525.7410692329895 1049.467585532779 2 525.7412109375 MULTI HCD FTMS 0 0 0 719 5723.75537109375 0.1959889993038042 -6 0.04758644104003906 1 2 Oxidation (M) _NM(Oxidation (M))YGM(Oxidation (M))FKK_ ENSG00000103035|ENST00000219313|PSMD7;ENST00000422197.2_1_1:51837944-51838202:+|nuORF 0.6903765706972694 0.5409681170271811 2 C 1 -1 1.9897 0 0 0.18959 0 0 649.507332702504 293.92182336978755 943.4291560722916 0 0 0 0 0 0 0 0 0 C 0.18959 - 3 + NaN NaN 97622.4 NaN 86 632 719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 721 16.754 NaN 29477 35 0 10765 0.261 -1 0 19 549.3063443708692 1096.5981358085382 2 549.3065185546875 MULTI HCD FTMS 0 0 0 719 5619.77734375 0.43902520897109004 6 -0.048267364501953125 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101492.8 NaN 87 632 719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 725 16.775 NaN 111540 35 0 12344 0.411 -1 0 52 532.7429316214877 1063.4713103097754 2 532.7429809570312 MULTI HCD FTMS 0 0 0 724 71120.609375 0.24503414539819862 40 -0.3145942687988281 1 NaN NaN 2 NAES{[NV]|[RG]}{[QG]|[NA]}V 9 -1 74.939 0 0 7.0466 0 0 0 162.02271448306877 162.02271448306877 69.45432175029467 0 0 0 0 2.6549471895720984 1.3010299956639813 0.3494850021680094 0 NAES{[NV]|[RG]}{[QG]|[NA]}V 7.0466 - 118 + NaN NaN 125382.1 NaN 88 635 724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 727 16.783 NaN 850350 35 0 178550 0.411 + 27605 TAGRHGDDL 9 79 471.2251985031682 940.4358440731364 2 471.22528076171875 MULTI HCD FTMS 0 0 0 726 656516.5 0.6877974867081434 3 -0.02297210693359375 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 132.37960578797484 0.0004606598083464779 2 [TA]GRHGDD{I|L} 9 0 + 95.588 0 0 10.164 10.164 95.281 0 0 0 10.185690803236298 10.185690803236298 10.185690803236298 10.185690803236298 0 1.9802046884880937 2 1.2474250108400469 0.25 + + [TA]GRHGDD{I|L};TAGRHGDD{I|L};[QT]RHGDD{I|L};TAGN[DP]R[NP];TAGN[DP]RG[PG];TQRHGDD{I|L};TAGGG[DP]R[NP];TAGGG[DP]RG[PG];[TA][RD][HN]D{I|L};[TA]GNGH[NG]T{I|L} 10.164;9.0812;7.2172;5.9014;5.8242;5.7293;4.9222;4.8497;4.4767;4.0256 +;+;-;-;-;-;-;-;-;- + 1309 NaN NaN 338091.8 NaN 89 636 726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 736 16.842 NaN 25579 35 0 4702.3 0.411 + 26590 SVSSSSYRR 9 24 514.7594455834163 1027.5043382336326 2 514.759521484375 MULTI HCD FTMS 0 0 0 735 17018.45703125 0.5367012838466061 10 -0.079376220703125 1 Unmodified _SVSSSSYRR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96718.2 NaN 90 644 735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 741 16.873 NaN 39125 35 0 4999.7 0.411 + 32933 YAHSGEHHL 9 34 525.7410692329895 1049.467585532779 2 525.7409057617188 MULTI HCD FTMS 0 0 0 740 15594.80859375 0.5339869949821737 10 -0.08160400390625 1 Unmodified _YAHSGEHHL_ ENSG00000166188|ENST00000299237|ZNF319 15.847184025352803 0.2234401846867398 2 CH{I|L} 3 7 23.416 0 0 2.2313 0 0 678.3087025075423 0 678.3087025075423 0 19.921525057367404 0 0 0 0.5 0 0 0 CH{I|L} 2.2313 - 9 NaN NaN 99605.7 NaN 91 648 740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 743 16.881 NaN 34950 35 0 4621.4 0.411 + -1 TWPETCAS 8 32 476.1981843378199 NaN 0 476.1986083984375 PEAK HCD FTMS 0 0 0 742 7445.05419921875 0.6189722803814378 -23 0.1783447265625 1 Carbamidomethyl (C) _TWPETC(Carbamidomethyl (C))AS_ REV__ENSG00000116525|ENST00000291416|TRIM62;REV__nc|ENSG00000116525|Q9BVG3-2|TRIM62 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88569.6 NaN 92 649 742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 746 16.896 NaN 80826 35 0 8889.2 0.411 -1 0 31 532.7429316214877 1063.4713103097754 2 532.7431030273438 MULTI HCD FTMS 0 0 0 745 51918.49609375 0.17887648084696608 56 -0.4471607208251953 1 NaN NaN 2 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 10 -1 {[QG]|[NA]} + + 50.763 3.7236 2.0119 4.7733 4.7733 61.967 0 0 0 0 50.76274388132951 0 0 0 2.6861818737241734 0 0 0 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}V{M(Oxidation (M))|F} 4.7733 - 61 + NaN NaN 115646.2 NaN 93 651 745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 748 16.904 NaN 143690 35 0 30573 0.327 + 27606 TAGRHGDDL 9 38 471.2251985031682 940.4358440731364 2 471.2251892089844 MULTI HCD FTMS 0 0 0 747 73004.0703125 0.0764824891383569 19 -0.15378952026367188 1 Unmodified _TAGRHGDDL_ CON__O95678;CON__P02538;CON__P04259;CON__P12035;CON__P13647;CON__P48668;CON__P50446;CON__Q01546;CON__Q5XQN5;CON__Q7Z794;CON__Q8BGZ7;CON__Q922U2;ENSG00000170454|ENST00000252245|KRT75;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5;ENSG00000186442|ENST00000417996|KRT3;ENSG00000189182|ENST00000341809|KRT77;ENSG00000205420|ENST00000330722|KRT6A;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000548735.1_1_12:52883720-52883843:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 28.494509381512117 0.11816142465008336 2 [TA]{[NV]|[RG]}H[DG]D{I|L} 9 0 + 48.82 0 0 5.1912 5.1912 91.759 0 0 0 19.356049514026523 25.02243120405232 19.356049514026523 48.81999966578718 0 1.3494850021680094 1.5228787452803376 0.3494850021680094 0 + + [TA]{[NV]|[RG]}H[DG]D{I|L} 5.1912 + + 25 NaN NaN 105760.7 NaN 94 652 747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 749 16.909 NaN 24179 35 0 6547.8 0.261 + 3143 EARPNQHHR 9 17 572.7886858934952 1143.5628188537903 2 572.7888793945312 MULTI HCD FTMS 0 0 0 747 4504.44677734375 0.3976871302091452 1 -0.009939193725585938 2 Unmodified _EARPNQHHR_ REV__ENSG00000179094|ENST00000317276|PER1 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95079.1 NaN 95 652 747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 753 16.931 NaN 52677 35 0 5569.6 0.411 + 4352 EVYPEARKK 9 39 560.3112362297757 1118.6079195263512 2 560.3114624023438 MULTI HCD FTMS 0 0 0 752 21420.947265625 0.3029476413753358 -9 0.07352066040039062 1 Unmodified _EVYPEARKK_ ENSG00000150459|ENST00000382533|SAP18;ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18 12.240655878213236 0.2545997876781172 2 {NN|[MP]|[D{I|L}]|[EV]}Y 3 6 15.458 0 0 1.3819 0 0 0 724.4115688276095 724.4115688276095 15.45757490560675 0 0 0 0 0.5 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}Y 1.3819 + + 3 + NaN NaN 95049.6 NaN 96 655 752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 763 16.999 NaN 35882 35 0 4586.9 0.411 + 32856 WWLQWLGI 8 26 551.2983352136306 1100.582117494061 2 551.2986450195312 MULTI HCD FTMS 0 0 0 762 6162.904296875 0.29672453663106774 -8 0.05917167663574219 1 Unmodified _WWLQWLGI_ ENSG00000196187|ENST00000366835|TMEM63A 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91279.3 NaN 97 664 762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 765 17.007 NaN 39368 35 0 8324.1 0.411 + 24059 RWVWWLGQ 8 21 565.8002969809539 NaN 0 565.8015747070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RWVWWLGQ_ ENST00000473638.5_1_22:39708982-39709710:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93777 NaN 98 665 764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 767 17.015 NaN 60883 35 0 5921 0.327 -1 0 28 532.7429316214877 1063.4713103097754 2 532.7430419921875 MULTI HCD FTMS 0 0 0 766 33703.3203125 0.11611914411911893 71 -0.5752067565917969 1 NaN NaN 2 HV{M(Oxidation (M))|F} 3 -1 38.5 0 0 3.6202 0 0 662.3155384748062 0 662.3155384748062 0 14.68765315847925 0 0 0 1.2302046884880937 0 0 0 HV{M(Oxidation (M))|F} 3.6202 - 19 NaN NaN 109523 NaN 99 666 766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 768 17.019 NaN 46150 35 0 8275.1 0.261 + 32857 WWLQWLGI 8 21 551.2983352136306 1100.582117494061 2 551.2987670898438 MULTI HCD FTMS 0 0 0 766 13772.771484375 0.663115803842515 -6 0.0455322265625 2 Unmodified _WWLQWLGI_ ENSG00000196187|ENST00000366835|TMEM63A 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95179.4 NaN 100 666 766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 770 17.025 NaN 14611 35 0 2769.7 0.411 -1 HFVLWGCLH 9 17 584.7893751611834 NaN 0 584.7891845703125 PEAK HCD FTMS 0 0 0 769 7728.12548828125 0.6942796243998003 6 -0.0491180419921875 1 Carbamidomethyl (C) _HFVLWGC(Carbamidomethyl (C))LH_ ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99596.6 NaN 101 667 769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 772 17.033 NaN 34373 35 0 5601 0.411 + 9890 IAPCWMCQ 8 32 476.1981843378199 NaN 0 476.1979675292969 PEAK HCD FTMS 0 0 0 771 7834.583984375 0.6513572883267066 -4 0.03407478332519531 1 Unmodified _IAPCWMCQ_ ENST00000475185.5_1_18:20877812-20889646:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99312.3 NaN 102 668 771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 775 17.048 NaN 15664 35 0 4886.1 0.327 + 32616 WLLRCALCI 9 11 545.7986073941727 1089.5826618551453 2 545.7985229492188 MULTI HCD FTMS 0 0 0 774 12717.443359375 0.35320934946604143 -9 0.07175636291503906 1 Unmodified _WLLRCALCI_ REV__ENSG00000102312|ENST00000326194|PORCN;REV__nc|ENSG00000102312|Q9H237-2|PORCN;REV__nc|ENSG00000102312|Q9H237-3|PORCN;REV__nc|ENSG00000102312|Q9H237-4|PORCN 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92944.6 NaN 103 670 774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 776 17.053 NaN 42298 35 0 9279.9 0.261 + 19161 NHFLVMLF 8 21 510.77026959588324 NaN 0 510.77056884765625 PEAK HCD FTMS 0 0 0 774 3839.468994140625 0.689124934489933 -1 0.007549285888671875 2 Unmodified _NHFLVMLF_ REV__ENSG00000169340|ENST00000302451|PDILT 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99094 NaN 104 670 774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 778 17.058 NaN 74367 35 0 8842.3 0.411 + 4353 EVYPEARKK 9 40 560.3112362297757 1118.6079195263512 2 560.3115844726562 MULTI HCD FTMS 0 0 0 777 49304.5390625 0.6972938046512984 7 -0.05465507507324219 1 Unmodified _EVYPEARKK_ ENSG00000150459|ENST00000382533|SAP18;ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18 29.081581746732265 0.1154664336125038 2 {NN|[MP]|[D{I|L}]|[EV]}YK 4 5 34.041 0 0 3.0432 0 0 0 596.3174532525999 596.3174532525999 20.853481135844874 0 0 0 0 0.5 1.5228787452803376 0 0 {NN|[MP]|[D{I|L}]|[EV]}YK 3.0432 - 16 + NaN NaN 107518.5 NaN 105 671 777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 781 17.074 NaN 33726 35 0 5883.6 0.411 + 16451 LSQYLNKK 8 23 497.2899412478199 992.5653295624398 2 497.2900695800781 MULTI HCD FTMS 0 0 0 780 10000.150390625 0.9537561874467828 -1 0.00754547119140625 1 Unmodified _LSQYLNKK_ REV__tr|U7T2U1|U7T2U1_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00458PE=4SV=1 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95921.7 NaN 106 673 780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 784 17.089 NaN 37236 35 0 5662.5 0.412 + 30958 VRNMFTEE 8 29 513.2395800678393 NaN 0 513.2396850585938 PEAK HCD FTMS 0 0 0 783 2099.26318359375 0.1949588301484353 -20 0.1577587127685547 1 Unmodified _VRNMFTEE_ REV__ENSG00000185787|ENST00000426013|MORF4L1;REV__ENST00000447135.2_1_4:174537089-174537971:-|nuORF;REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF;REV__nc|ENSG00000185787|Q9UBU8-3|MORF4L1;REV__nc|ENSG00000185787|Q9UBU8|MORF4L1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96523.6 NaN 107 675 783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 786 17.097 NaN 13489 35 0 1967.7 0.411 + 23683 RQKQWRSRL 9 21 629.3660277038847 NaN 0 629.3656616210938 PEAK HCD FTMS 0 0 0 785 1632.8436279296875 0.2282054007354434 17 -0.13363075256347656 1 Unmodified _RQKQWRSRL_ REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF 0.5247636613948944 0.2927039108006614 2 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.55619 0 0 573.9406602888256 519.7199801080686 1093.6606403968942 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.55619 - 1 + NaN NaN 96728.8 NaN 108 676 785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 792 17.135 NaN 55436 35 0 6109.6 0.327 -1 0 34 532.7429316214877 1063.4713103097754 2 532.7430419921875 MULTI HCD FTMS 0 0 0 791 38785.54296875 0.13362909090165212 86 -0.6861324310302734 1 NaN NaN 2 V{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.3712 0 0 799.355760642775 0 799.355760642775 0 -0.22878745280337398 -0.22878745280337398 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3712 - 29 NaN NaN 95375.3 NaN 109 681 791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 793 17.139 NaN 43285 35 0 10677 0.261 + 23473 RLVAQLDTEG 10 21 551.2983352136306 1100.582117494061 2 551.298828125 MULTI HCD FTMS 0 0 0 791 3004.062744140625 0.14463621092051826 9 -0.07093048095703125 2 Unmodified _RLVAQLDTEG_ ENSG00000162729|ENST00000314485|IGSF8;nc|ENSG00000162729|Q969P0-2|IGSF8;nc|ENSG00000162729|Q969P0-3|IGSF8 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90873.2 NaN 110 681 791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 796 17.152 NaN 37506 35 0 4992.4 0.411 + 28302 TLTQIPNQQG 10 37 550.2904864686788 NaN 0 550.278076171875 PEAK HCD FTMS 0 0 0 795 1243.9488525390625 0.3260509292508228 2 -0.015407562255859375 1 Unmodified _TLTQIPNQQG_ ENSG00000187833|ENST00000409561|C2orf78 1.4819007175156935 0.33891598740166873 2 Q 1 9 6.9897 0 0 0.63626 0 0 315.1700099473199 652.3159273736936 967.4859373210136 0 0 0 0 0 0 0 0 0 + Q 0.63626 + + 3 + NaN NaN 95333.5 NaN 111 683 795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 799 17.168 NaN 40623 35 0 5277.9 0.411 + 1115 AYKKTHETL 9 30 545.7986073941727 1089.5826618551453 2 545.7986450195312 MULTI HCD FTMS 0 0 0 798 23018.767578125 0.6393143411003255 6 -0.045650482177734375 1 Unmodified _AYKKTHETL_ ENSG00000111907|ENST00000534000|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;nc|ENSG00000111907|Q16890-2|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-5|TPD52L1;RNF217-TPD52L1|1|fusion;RNF217-TPD52L1|2|fusion;RNF217-TPD52L1|3|fusion 16.149105407346934 0.22083165093524068 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K 3 6 30.458 0 0 2.7953 0 0 0 724.3635714447126 724.3635714447126 10.993624753846092 0 0 0 0 0 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K 2.7953 + + 6 + NaN NaN 98542 NaN 112 685 798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 804 17.198 NaN 25956 35 0 5814.9 0.411 + 1116 AYKKTHETL 9 33 545.7986073941727 1089.5826618551453 2 545.8004150390625 MULTI HCD FTMS 0 0 0 803 12298.4609375 0.34157269385168154 10 -0.0793304443359375 1 Unmodified _AYKKTHETL_ ENSG00000111907|ENST00000534000|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;nc|ENSG00000111907|Q16890-2|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-5|TPD52L1;RNF217-TPD52L1|1|fusion;RNF217-TPD52L1|2|fusion;RNF217-TPD52L1|3|fusion 15.248480904072842 0.22861284681709862 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK 4 5 32.167 0 0 2.9522 0 0 0 596.2681368463499 596.2681368463499 21.70941280735775 0 0 0 0 0.5 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK 2.9522 + + 5 + NaN NaN 95021 NaN 113 689 803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 807 17.213 NaN 38077 35 0 7134 0.327 + 12576 KTLLHDMDAGH 11 17 619.3035296860271 1236.5925064388541 2 619.3032836914062 MULTI HCD FTMS 0 0 0 806 9384.3427734375 0.5445145085940274 1 -0.009908676147460938 1 Unmodified _KTLLHDMDAGH_ ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF 0.26902006276349055 0.4177408358971266 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91540.4 NaN 114 691 806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 808 17.218 NaN 48042 35 0 12256 0.262 + 21188 PPYWSWKCRWE 11 19 513.2395800678393 NaN 0 513.23974609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PPYWSWKCRWE_ REV__ENST00000359786.9_2_17:1387569-1395801:-|nuORF 0.0732635311334299 0.34191231592972665 2 C 1 -1 4.6041 0 0 0.44941 0 0 608.604329958141 309.8188875787719 918.423217536913 0 0 0 0 0 0 0 0 0 C 0.44941 + + 1 + NaN NaN 90936.7 NaN 115 691 806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 813 17.246 NaN 19982 35 0 3934.7 0.411 -1 IWKMYKQA 8 17 542.2873974066018 1082.5602418800036 2 542.7889404296875 MULTI HCD FTMS 0 0 0 812 4855.3369140625 0.41495059516814803 -8 0.0623626708984375 1 Oxidation (M) _IWKM(Oxidation (M))YKQA_ ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107637.7 NaN 116 695 812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 815 17.254 NaN 49800 35 0 4973.7 0.411 -1 0 39 532.7429316214877 1063.4713103097754 2 532.7430419921875 MULTI HCD FTMS 0 0 0 814 26328.984375 0.09071210500339796 101 -0.8105411529541016 1 NaN NaN 2 HV{M(Oxidation (M))|F} 3 -1 34.297 0 0 3.225 0 0 662.3178543770289 0 662.3178543770289 0 16.096981436199012 0 0 0 1.110924374808178 0 0 0 HV{M(Oxidation (M))|F} 3.225 - 39 NaN NaN 103622 NaN 117 696 814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 818 17.269 NaN 22820 35 0 10196 0.411 + 32535 WHMRKKPR 8 16 569.8246962040341 NaN 0 569.8251342773438 PEAK HCD FTMS 0 0 0 817 3504.557861328125 0.35033180151868126 -19 0.1490955352783203 1 Unmodified _WHMRKKPR_ ENST00000243643.8_1_19:53619685-53636133:-|nuORF;ENST00000600120.5_1_19:53619685-53636050:-|nuORF 0 0.38822285293237185 2 P 1 7 4.6041 0 0 0.40471 0 0 887.8650315908823 149.6984804742797 1037.563512065162 0 0 0 0 0 0 0 0 0 + P 0.40471 + + 1 + NaN NaN 89511.8 NaN 118 698 817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 820 17.277 NaN 19407 35 0 2226.3 0.411 -1 RLNCGHMRAL 10 25 622.3105512508372 1242.6065495684743 2 622.3112182617188 MULTI HCD FTMS 0 0 0 819 9193.0771484375 0.40889160217543613 -8 0.06381607055664062 1 Carbamidomethyl (C),Oxidation (M) _RLNC(Carbamidomethyl (C))GHM(Oxidation (M))RAL_ ENSG00000136002|ENST00000409359|ARHGEF4 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94970.4 NaN 119 699 819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 822 17.285 NaN 35741 35 0 5624.1 0.327 + -1 KGCLDCPYV 9 26 556.249072380155 1110.4835918271099 2 556.2489624023438 MULTI HCD FTMS 0 0 0 821 9557.615234375 0.14556173306040043 -12 0.09464073181152344 1 2 Carbamidomethyl (C) _KGC(Carbamidomethyl (C))LDC(Carbamidomethyl (C))PYV_ REV__ENSG00000261221|ENST00000568956|ZNF865 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92565.6 NaN 120 700 821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 823 17.29 NaN 43502 35 0 9448.8 0.261 + -1 RRRRRQLRQQR 11 21 551.0016324624822 NaN 0 550.7792358398438 PEAK HCD FTMS 0 0 0 821 1340.164794921875 0.264951679621959 7 -0.05824851989746094 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RRRRRQLRQQR_ REV__ENST00000394166.7_1_15:96874192-96874351:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91423.1 NaN 121 700 821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 825 17.295 NaN 24303 35 0 5714.2 0.411 + 31045 VSSSRNRSR 9 24 524.783960818596 NaN 0 524.7836303710938 PEAK HCD FTMS 0 0 0 824 1884.597900390625 0.3745991505159786 1 -0.008001327514648438 1 Unmodified _VSSSRNRSR_ REV__ENSG00000104983|ENST00000595358|CCDC61;REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93201.8 NaN 122 701 824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 827 17.303 NaN 16240 35 0 4346.5 0.327 + 33333 YFWRAYDQC 9 15 626.2654585011862 NaN 0 626.2651977539062 PEAK HCD FTMS 0 0 0 826 5187.65234375 0.9994888870805462 -5 0.04157257080078125 1 Unmodified _YFWRAYDQC_ ENSG00000173250|ENST00000311104|GPR151 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90886.9 NaN 123 702 826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 828 17.308 NaN 36578 35 0 11020 0.261 + 23823 RRRRLWRWWW 10 15 552.980811951817 NaN 0 553.2992553710938 PEAK HCD FTMS 0 0 0 826 3402.56884765625 1 0 0 2 Unmodified _RRRRLWRWWW_ chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93604.7 NaN 124 702 826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 833 17.336 NaN 32580 35 0 7894.4 0.411 + 21280 PRRLGSQEST 10 24 565.8000774710795 NaN 0 565.80029296875 PEAK HCD FTMS 0 0 0 832 8405.5439453125 0.8200085361217998 -29 0.2302837371826172 1 Unmodified _PRRLGSQEST_ ENST00000425916.4_1_10:77163018-77167299:+|nuORF 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92655.8 NaN 125 706 832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 836 17.351 NaN 23193 35 0 4986.9 0.411 -1 CGNRLLWLG 9 25 544.7883378266142 1087.5621227200284 2 544.7883911132812 MULTI HCD FTMS 0 0 0 835 4941.93017578125 0.5858398872528272 -6 0.04778861999511719 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GNRLLWLG_ ENST00000428747.1_1_1:15655214-15655385:-|nuORF 2.302733041254933 0.33356062215410776 2 {I|L} 1 -1 2.4743 0 0 0.2275 0 0 487.18951637412835 484.2644442193969 971.4539605935253 0 0 0 0 0 0 0 0 0 {I|L} 0.2275 + + 4 + NaN NaN 105326.9 NaN 126 708 835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 839 17.367 NaN 34123 35 0 4945.5 0.327 + 23778 RRMGIEFEAE 10 18 619.3035296860271 1236.5925064388541 2 619.303466796875 MULTI HCD FTMS 0 0 0 838 8685.4677734375 0.5039631789611418 20 -0.164276123046875 1 Unmodified _RRMGIEFEAE_ tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1 0.4007161486938917 0.47318265037741464 2 {I|L} 1 9 3.9794 0 0 0.3218 0 0 469.69872089373536 650.7987764947874 1120.4974973885228 0 0 0 0 0 0 0 0 0 + {I|L} 0.3218 + + 1 + NaN NaN 92064.6 NaN 127 710 838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 840 17.371 NaN 23274 35 0 5629.9 0.261 -1 HVMRKCRP 8 18 542.2873974066018 1082.5602418800036 2 542.2875366210938 MULTI HCD FTMS 0 0 0 838 6968.5859375 0.40296939416055594 7 -0.06692695617675781 2 Carbamidomethyl (C) _HVMRKC(Carbamidomethyl (C))RP_ ENST00000434391.6_1_1:26758790-26759412:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95298.9 NaN 128 710 838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 841 17.375 NaN 35297 35 0 5738 0.261 + -1 HFCARCAS 8 24 476.1982328024408 NaN 0 476.1988220214844 PEAK HCD FTMS 0 0 0 838 7999.7119140625 0.552410557787516 -96 0.7578239440917969 3 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93616.2 NaN 129 710 838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 842 17.378 NaN 20187 35 0 3101.9 0.261 + 21346 PSYLFYYRA 9 19 590.2960224259662 1178.5774919187322 2 590.7974243164062 MULTI HCD FTMS 0 0 0 838 1555.364990234375 0.40004444537100015 1 -0.01654052734375 4 Unmodified _PSYLFYYRA_ ENSG00000149150|ENST00000278426|SLC43A1 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92575.6 NaN 130 710 838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 844 17.383 NaN 27668 35 0 4200.8 0.327 -1 CEEWWEDCRMS 11 16 510.85279780158754 NaN 0 510.85302734375 PEAK HCD FTMS 0 0 0 843 4530.89892578125 0.563443423407472 11 -0.08740234375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))EEWWEDCRMS_ ENSG00000183560|ENST00000687084|IZUMO1R;nc|ENSG00000183560|A6ND01-2|IZUMO1R 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82347.8 NaN 131 711 843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 847 17.398 NaN 17537 35 0 2445.3 0.411 -1 RLNCGHMRAL 10 24 622.3105512508372 1242.6065495684743 2 622.3099975585938 MULTI HCD FTMS 0 0 0 846 7883.4384765625 0.35064122026659994 6 -0.05025672912597656 1 Carbamidomethyl (C),Oxidation (M) _RLNC(Carbamidomethyl (C))GHM(Oxidation (M))RAL_ ENSG00000136002|ENST00000409359|ARHGEF4 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 114071.5 NaN 132 713 846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 849 17.406 NaN 88805 35 0 12688 0.327 + 21951 QEHQGHQTF 9 43 556.249072380155 1110.4835918271099 2 556.2492065429688 MULTI HCD FTMS 0 0 0 848 50004.28125 0.7615612954381149 2 -0.017490386962890625 1 Unmodified _QEHQGHQTF_ ENSG00000132274|ENST00000379965|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF;ENST00000480395.5_1_11:5717822-5718591:+|nuORF;nc|ENSG00000132274|Q8IYM9-2|TRIM22 14.405379775768559 0.2358970535022398 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}HQGHQ[{M(Oxidation (M))|F}T] 9 0 + 16.149 0 0 1.4542 1.4542 84.946 0 0 0 2.3764301679958812 5.691446804494904 2.3764301679958812 9.20818753952375 0 0 0 0.3807196863200844 0 + + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}HQGHQ[{M(Oxidation (M))|F}T];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}HQGH[AG][{M(Oxidation (M))|F}T];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H[AG]GHQ[{M(Oxidation (M))|F}T] 1.4542;0.62503;0.62503 +;-;- + 31 + NaN NaN 94491.1 NaN 133 714 848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 850 17.411 NaN 15730 35 0 3109.4 0.261 + 9625 HTINGHNAEVR 11 17 624.3153144089302 1246.6160758846604 2 624.315673828125 MULTI HCD FTMS 0 0 0 848 9770.5849609375 0.3810408300401459 -9 0.07803153991699219 2 Unmodified _HTINGHNAEVR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000495810.1_1_7:26235422-26236427:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 95713.7 NaN 134 714 848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 853 17.424 NaN 33250 35 0 5083.4 0.327 -1 0 26 532.7429316214877 1063.4713103097754 2 532.7431030273438 MULTI HCD FTMS 0 0 0 852 20821.044921875 0.07173542231378194 121 -0.9612960815429688 1 NaN NaN 2 {[QG]|[NA]}E 3 -1 18.2 0 0 1.7114 0 0 0 746.3265474908811 746.3265474908811 11.210149894766705 0 0 0 0 0.7742275032520141 0 0 0 {[QG]|[NA]}E 1.7114 - 7 + NaN NaN 104006.9 NaN 135 716 852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 854 17.428 NaN 26994 35 0 7813.4 0.261 + 21873 QAWSERRR 8 11 544.7883378266142 1087.5621227200284 2 544.7900390625 MULTI HCD FTMS 0 0 0 852 6541.66552734375 0.7754801178223699 2 -0.017421722412109375 2 Unmodified _QAWSERRR_ REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF 0.7936320650641473 0.540814922690045 2 R 1 -1 5.4846 0 0 0.5043 0 0 387.65350563194085 540.7893160455686 928.4428216775095 0 0 0 0 0 0 0 0 0 R 0.5043 + + 1 + NaN NaN 88466.1 NaN 136 716 852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 867 17.515 NaN 219820 35 0 30335 0.411 + 27587 TAEGHPKSL 9 63 470.24809334771453 938.4816337622291 2 470.24786376953125 MULTI HCD FTMS 0 0 0 866 87665.3125 0.5187684139125778 -6 0.044231414794921875 1 Unmodified _TAEGHPKSL_ ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF 78.06048673739656 0.006479972202176041 2 TAEGHPK{[TV]|[{I|L}S]} 9 0 + 85.166 0 0 9.0748 9.0748 98.712 0 0 0 77.49713360831635 14.934239665113708 14.934239665113708 85.16556584842512 0 2.079689690656103 1.6989700043360187 1.3098943791441968 0 + + TAEGHPK{[TV]|[{I|L}S]} 9.0748 + + 96 + NaN NaN 154330.8 NaN 137 728 866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 869 17.523 NaN 30456 35 0 5347.8 0.411 -1 0 24 497.4561511156964 NaN 0 497.2053527832031 PEAK HCD FTMS 0 0 0 868 1989.474365234375 1 0 0 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90326.7 NaN 138 729 868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 871 17.531 NaN 22197 35 0 4258.2 0.327 + -1 TRGSSGCSGRS 11 13 556.249072380155 1110.4835918271099 2 556.2486572265625 MULTI HCD FTMS 0 0 0 870 4179.873046875 0.0636591398330515 18 -0.14369964599609375 1 Carbamidomethyl (C) _TRGSSGC(Carbamidomethyl (C))SGRS_ REV__ENSG00000197323|ENST00000358465|TRIM33;REV__nc|ENSG00000197323|Q9UPN9-2|TRIM33 0 0.41892066650488113 2 R 1 -1 4.6041 0 0 0.4146 0 0 783.8393790358974 167.51337610416252 951.3527551400599 0 0 0 0 0 0 0 0 0 R 0.4146 + + 2 + NaN NaN 90049.6 NaN 139 730 870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 872 17.535 NaN 80629 35 0 17695 0.264 -1 0 32 400.3503678190503 NaN 0 400.8338928222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96393.1 NaN 140 730 870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 874 17.541 NaN 14439 35 0 2343.4 0.411 + 9626 HTINGHNAEVR 11 20 624.3153144089302 1246.6160758846604 2 624.3161010742188 MULTI HCD FTMS 0 0 0 873 7482.291015625 0.2918001727219118 8 -0.06436538696289062 1 Unmodified _HTINGHNAEVR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000495810.1_1_7:26235422-26236427:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91916.4 NaN 141 731 873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 876 17.549 NaN 35606 35 0 5498.7 0.327 -1 0 20 532.7429316214877 1063.4713103097754 2 532.7434692382812 MULTI HCD FTMS 0 0 0 875 14063.22265625 0.048452477775452175 137 -1.1009407043457031 1 NaN NaN 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9718 0 0 799.3530750959 0 799.3530750959 0 10.511525224473813 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.9718 - 2 NaN NaN 87171.8 NaN 142 732 875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 877 17.553 NaN 21378 35 0 6191.2 0.261 + 30546 VMYWHVRF 8 19 569.2858140202177 1136.5570751072353 2 569.2861328125 MULTI HCD FTMS 0 0 0 875 1648.788818359375 0.24789002517647205 -4 0.0341033935546875 2 Unmodified _VMYWHVRF_ ENST00000555235.1_1_14:103966361-103969561:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94669.9 NaN 143 732 875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 879 17.559 NaN 34227 35 0 5462.3 0.411 + -1 PMLVCTMFR 9 26 557.2662204434829 1112.5178879537657 2 557.266357421875 MULTI HCD FTMS 0 0 0 878 6742.57861328125 0.5988399363517949 -1 0.009954452514648438 1 Oxidation (M) _PM(Oxidation (M))LVCTMFR_ REV__ENST00000375254.7_1_1:19482134-19482772:-|nuORF 1.4819007175156935 0.3397831423917744 2 H[EP] 3 -1 10.458 0 0 0.93999 0 0 731.3742542951187 0 731.3742542951187 0 8.863781092484688 0 0 0 0 0 0 0 H[EP] 0.93999 - 4 NaN NaN 99957 NaN 144 733 878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 881 17.567 NaN 39488 35 0 6054 0.411 + -1 LCVEWRHN 8 33 557.2662204434829 1112.5178879537657 2 557.2649536132812 MULTI HCD FTMS 0 0 0 880 11259.400390625 1 0 0 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VEWRHN_ REV__ENSG00000131747|ENST00000423485|TOP2A;REV__nc|ENSG00000131747|P11388-2|TOP2A;REV__nc|ENSG00000131747|P11388-3|TOP2A;REV__nc|ENSG00000131747|P11388-4|TOP2A 0.6903765706972694 0.5409681170271811 2 {I|L} 1 -1 3.4949 0 0 0.31414 0 0 556.6355159828657 439.77488123111567 996.4103972139815 0 0 0 0 0 0 0 0 0 {I|L} 0.31414 + + 2 + NaN NaN 99045.7 NaN 145 734 880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 886 17.597 NaN 27486 35 0 7931.9 0.411 -1 KEKHRCHMS 9 27 614.7877502857984 NaN 0 614.7883911132812 PEAK HCD FTMS 0 0 0 885 9632.02734375 0.6830283669623881 -80 0.6429347991943359 1 Carbamidomethyl (C),Oxidation (M) _KEKHRC(Carbamidomethyl (C))HM(Oxidation (M))S_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107892.9 NaN 146 738 885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 890 17.62 NaN 14832 35 0 2804.7 0.412 -1 RFQNILFMY 9 24 624.3153144089302 1246.6160758846604 2 624.3153686523438 MULTI HCD FTMS 0 0 0 889 1780.796142578125 0.06944886544798547 18 -0.13648605346679688 1 Oxidation (M) _RFQNILFM(Oxidation (M))Y_ tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101263.4 NaN 147 741 889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 894 17.643 NaN 33520 35 0 4909.2 0.411 -1 WPTHGGHC 8 26 476.1982328024408 NaN 0 476.1979675292969 PEAK HCD FTMS 0 0 0 893 9981.0498046875 0.6892294809041949 -62 0.4982776641845703 1 Carbamidomethyl (C) _WPTHGGHC(Carbamidomethyl (C))_ ENST00000359867.7_2_22:38689311-38694809:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94481.6 NaN 148 744 893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 897 17.659 NaN 18728 35 0 4317.2 0.411 + 4037 ESAPEGQAQQR 11 23 600.7837214836841 1199.552890034168 2 600.7841796875 MULTI HCD FTMS 0 0 0 896 6434.0927734375 0.19015144439817694 -16 0.12767410278320312 1 Unmodified _ESAPEGQAQQR_ ENSG00000065978|ENST00000321358|YBX1 4.189502756095605 0.4005469306127019 2 {[ES]|[DT]|[{I|L}C]}A 3 8 10.458 0 0 0.87179 0 0 0 909.4183370688098 909.4183370688098 3.1555280207258125 0 0 0 0 0 0 0 0 + {[ES]|[DT]|[{I|L}C]}A 0.87179 + + 3 + NaN NaN 110974.8 NaN 149 746 896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 899 17.667 NaN 42456 35 0 5944.4 0.411 -1 0 37 532.7429316214877 1063.4713103097754 2 532.7430419921875 MULTI HCD FTMS 0 0 0 898 13286.017578125 0.04577474787702919 152 -1.232513427734375 1 NaN NaN 2 V{M(Oxidation (M))|F} 2 -1 29.024 0 0 2.7291 0 0 799.35551650215 0 799.35551650215 0 18.566147098514705 0 0 0 0.805462187404089 0 0 0 V{M(Oxidation (M))|F} 2.7291 - 30 NaN NaN 108104 NaN 150 747 898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 904 17.697 NaN 28621 35 0 4244.6 0.411 + 830 AVSTVTKTER 10 15 546.3064735444309 NaN 0 546.3062744140625 PEAK HCD FTMS 0 0 0 903 11457.0986328125 0.9093380845167887 -4 0.030345916748046875 1 Unmodified _AVSTVTKTER_ ENSG00000183963|ENST00000333137|SMTN;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000493335.5_1_22:31492537-31494796:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN 2.498486711656943 0.3380459306859131 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89926.7 NaN 151 751 903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 915 17.771 NaN 32873 35 0 4353.4 0.411 + 25326 SDCHLTEF 8 25 476.1982328024408 NaN 0 476.1983642578125 PEAK HCD FTMS 0 0 0 914 5546.42333984375 0.38300164353454064 -45 0.3477306365966797 1 Unmodified _SDCHLTEF_ tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113848.3 NaN 152 761 914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 917 17.779 NaN 49996 35 0 15652 0.411 + 4038 ESAPEGQAQQR 11 28 600.7837214836841 1199.552890034168 2 600.7838745117188 MULTI HCD FTMS 0 0 0 916 33836.67578125 1 0 0 1 Unmodified _ESAPEGQAQQR_ ENSG00000065978|ENST00000321358|YBX1 17.44264345198275 0.3051040874848456 2 {[ES]|[DT]|[{I|L}C]}A[EP]GQAQ{[{M(Oxidation (M))|F}H]|[RQ]} 11 0 + 37.479 0 0 3.1244 3.1244 83.935 0 0 0 31.99411062606839 7.3675856522541885 7.3675856522541885 9.128498242811006 0 0 0 0 0.4247425010840047 + + {[ES]|[DT]|[{I|L}C]}A[EP]GQAQ{[{M(Oxidation (M))|F}H]|[RQ]};{[ES]|[DT]|[{I|L}C]}A[EP]GQA[AG]{[{M(Oxidation (M))|F}H]|[RQ]};{[ES]|[DT]|[{I|L}C]}A[EP]G[AG]AQ{[{M(Oxidation (M))|F}H]|[RQ]};{[ES]|[DT]|[{I|L}C]}A[EP]QQQ{[{M(Oxidation (M))|F}H]|[RQ]} 3.1244;2.3634;2.3634;1.7659 +;-;-;- + 85 + NaN NaN 97020.9 NaN 153 762 916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 919 17.787 NaN 30648 35 0 2651.3 0.411 -1 0 29 532.7429316214877 1063.4713103097754 2 532.7429809570312 MULTI HCD FTMS 0 0 0 918 15855.525390625 0.054627556598199296 168 -1.3835277557373047 1 NaN NaN 2 HV{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.7921 0 0 662.3156734919827 0 662.3156734919827 0 11.492887666437138 0 0 0 0.3494850021680094 0 0 0 HV{M(Oxidation (M))|F} 2.7921 - 11 NaN NaN 96525.8 NaN 154 763 918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 921 17.798 NaN 241930 35 0 21978 0.411 -1 0 68 505.73026959377 1009.44598625434 2 505.7302551269531 MULTI HCD FTMS 0 0 0 920 64900.73828125 0.19272293822301598 -11 0.08574485778808594 1 NaN NaN 2 HA{[ET]|[MV]}{[ES]|[DT]|[{I|L}C]}H 7 -1 46.232 0 0 4.58 0 0 0 215.10311304263908 215.10311304263908 21.015603662034863 0 0 0 0 1.774227503252014 1.5228787452803376 1.031234684152075 0 HA{[ET]|[MV]}{[ES]|[DT]|[{I|L}C]}H 4.58 - 83 + NaN NaN 163112.5 NaN 155 764 920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 928 17.843 NaN 32594 35 0 11137 0.411 -1 ICDMPTELHI 10 26 614.7877502857984 NaN 0 614.7880249023438 PEAK HCD FTMS 0 0 0 927 9401.7880859375 0.6667015918545136 -48 0.37261962890625 1 Carbamidomethyl (C) _IC(Carbamidomethyl (C))DMPTELHI_ ENSG00000138356|ENST00000374700|AOX1 0.4007161486938917 0.3398413315442166 2 {I|L} 1 -1 1.1092 0 0 0.090362 0 0 612.8423329917156 498.6047762506469 1111.4471092423626 0 0 0 0 0 0 0 0 0 {I|L} 0.090362 + + 1 + NaN NaN 97695.8 NaN 156 770 927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 930 17.851 NaN 28659 35 0 5778.9 0.411 + 11951 KFKWRKDP 8 24 552.8172607421875 NaN 0 552.8172607421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KFKWRKDP_ ENSG00000203747|ENST00000443193|FCGR3A 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113460.9 NaN 157 771 929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 932 17.859 NaN 71478 35 0 14722 0.411 -1 0 31 400.35007047601226 NaN 0 400.3493957519531 PEAK HCD FTMS 0 0 0 931 1101.2139892578125 0.5390782418168958 2 -0.017992019653320312 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100695.5 NaN 158 772 931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 934 17.867 NaN 34866 35 0 7408.4 0.327 + 27651 TAKKDINEVL 10 19 565.8243248353198 1129.6340967374394 2 565.8241577148438 MULTI HCD FTMS 0 0 0 933 3918.477783203125 0.22611980414662922 -7 0.053607940673828125 1 Unmodified _TAKKDINEVL_ REV__ENSG00000103449|ENST00000251020|SALL1;REV__nc|ENSG00000103449|Q9NSC2-2|SALL1 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92220.9 NaN 159 773 933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 935 17.872 NaN 35275 35 0 10802 0.261 + -1 HLEWSRKS 8 21 542.7795977455864 1083.5446425579728 2 542.7802734375 MULTI HCD FTMS 0 0 0 933 7641.40625 0.6761473736511812 -1 0.008058547973632812 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))HLEWSRKS_ REV__ENST00000485500.1_1_3:49065635-49065977:-|nuORF;REV__ENST00000496837.1_1_3:49065635-49066789:-|nuORF 4.3292370932331545 0.5355693454741696 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84405.6 NaN 160 773 933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 938 17.885 NaN 31681 35 0 5150.9 0.411 + -1 HLGLNLLWC 9 27 563.2984435851295 NaN 0 563.298583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _HLGLNLLWC(Carbamidomethyl (C))_ REV__ENST00000418258.5_1_9:98268847-98269307:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91387.1 NaN 161 775 937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 941 17.9 NaN 16592 35 0 5361.9 0.411 -1 LTWLIPYM 8 19 526.7775569300136 1051.540560926827 2 526.7777099609375 MULTI HCD FTMS 0 0 0 940 4951.2265625 0.8054787199479924 -7 0.0571441650390625 1 Oxidation (M) _LTWLIPYM(Oxidation (M))_ ENST00000496323.1_1_2:54880712-54887220:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85269.9 NaN 162 777 940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 943 17.908 NaN 186180 35 0 57090 0.327 + 799 ATGALAAARH 10 39 469.7619494377953 937.5093459423906 2 469.7617492675781 MULTI HCD FTMS 0 0 0 942 64731.734375 0.9183365349702542 -1 0.007993698120117188 1 Unmodified _ATGALAAARH_ REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF;REV__ENST00000531322.1_1_11:45673541-45686758:-|nuORF 36.506200033944 0.17572556831573002 2 [TA]AAVAAARH 10 -1 + 70.923 0 0 7.565 7.565 94.052 0 0 0 66.3185910232044 16.53212513775344 16.53212513775344 18.994112934271143 0 2.579689690656103 0 0 0 [TA]AAVAAARH;[TA]AAV{[NV]|[RG]}RH;[TA]AA[Q{I|L}]ARH;[TA]A[Q{I|L}]AARH;[TA][Q{I|L}]AAARH;[TA][Q{I|L}]{[NV]|[RG]}RH 7.565;5.539;5.454;4.571;4.1227;2.1024 -;-;-;-;-;- 176 + NaN NaN 115401.8 NaN 163 778 942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 944 17.913 NaN 17282 35 0 3210.3 0.261 + -1 GCQLERCVVH 10 17 600.7837214836841 1199.552890034168 2 600.7841186523438 MULTI HCD FTMS 0 0 0 942 3248.727783203125 0.09601202565540881 16 -0.13031387329101562 2 Carbamidomethyl (C) _GC(Carbamidomethyl (C))QLERCVVH_ REV__ENSG00000214279|ENST00000640237|SCART1;REV__ENST00000463137.5_1_10:135271820-135273512:+|nuORF;REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97913.5 NaN 164 778 942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 946 17.918 NaN 541120 35 0 58262 0.327 -1 0 67 505.73026959377 1009.44598625434 2 505.7303161621094 MULTI HCD FTMS 0 0 0 945 288763.875 0.8574851984194077 4 -0.03352546691894531 1 NaN NaN 2 HATE{[ES]|[DT]|[{I|L}C]}H 7 -1 72.528 0 0 7.185 0 0 0 215.10321985416252 215.10321985416252 47.311763481186944 0 0 0 0 2.2059771852360797 1.5228787452803376 1.4049471895720984 0 HATE{[ES]|[DT]|[{I|L}C]}H 7.185 - 226 + NaN NaN 185172.4 NaN 165 779 945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 947 17.923 NaN 43490 35 0 9920.2 0.261 + -1 VVPTRTCSPS 10 25 552.2790365209164 1102.5435201086327 2 552.2781982421875 MULTI HCD FTMS 0 0 0 945 6743.48681640625 0.2903426644705114 -10 0.08246612548828125 2 Carbamidomethyl (C) _VVPTRTC(Carbamidomethyl (C))SPS_ REV__ENST00000320868.9_1_16:227411-227501:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95894.5 NaN 166 779 945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 949 17.928 NaN 39196 35 0 16715 0.411 -1 NEVINYMR 8 19 527.752823325093 1053.491093716986 2 527.7525024414062 MULTI HCD FTMS 0 0 0 948 9650.0498046875 0.7459543831501055 -21 0.1716747283935547 1 Oxidation (M) _NEVINYM(Oxidation (M))R_ ENSG00000163818|ENST00000296135|LZTFL1;ENST00000480156.5_1_3:45874526-45883504:-|nuORF;ENST00000495864.5_1_3:45877080-45883504:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93928.6 NaN 167 780 948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 952 17.944 NaN 26837 35 0 5143.1 0.411 + 1752 CLFISIACKS 10 34 542.7795977455864 1083.5446425579728 2 542.7786865234375 MULTI HCD FTMS 0 0 0 951 9440.986328125 0.8353826379062659 8 -0.06387710571289062 1 Unmodified _CLFISIACKS_ REV__nc|ENSG00000172340|Q96I99-2|SUCLG2 5.731851221503515 0.44496410492002586 2 C[KS] 3 -1 12.447 0 0 1.1488 0 0 747.3874378888687 0 747.3874378888687 0 12.447274948966937 0 0 0 0.5 0 0 0 C[KS] 1.1488 + + 3 NaN NaN 104964 NaN 168 782 951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 955 17.959 NaN 46873 35 0 4441.5 0.411 + 19230 NKKQPYYY 8 32 552.2790365209164 1102.5435201086327 2 552.2780151367188 MULTI HCD FTMS 0 0 0 954 12374.154296875 0.532772588860575 -5 0.041065216064453125 1 Unmodified _NKKQPYYY_ ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF 2.577480529830294 0.5381683276125971 2 E 1 8 3.9794 0 0 0.36093 0 0 621.2790985771859 349.19855676822505 970.477655345411 0 0 0 0 0 0 0 0 0 E 0.36093 - 1 + NaN NaN 95184.7 NaN 169 784 954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 959 17.982 NaN 43359 35 0 6131 0.411 + 9658 HVEWLWSE 8 38 543.2556779097637 1084.4968028863273 2 543.2560424804688 MULTI HCD FTMS 0 0 0 958 9247.146484375 0.3077779118365424 -11 0.08950424194335938 1 Unmodified _HVEWLWSE_ REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;REV__CON__Q1A7A4;REV__ENSG00000106804|ENST00000223642|C5 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 117068.5 NaN 170 787 958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 962 17.998 NaN 18940 35 0 5036.3 0.327 + 23841 RRTYPCPPV 9 10 544.7885678328902 NaN 0 544.787841796875 PEAK HCD FTMS 0 0 0 961 5452.18994140625 0.731624863157183 1 -0.009891510009765625 1 Unmodified _RRTYPCPPV_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|107|2|sense 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82838.4 NaN 171 789 961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 963 18.002 NaN 43436 35 0 11298 0.261 + 128 AEASHVSRY 9 29 510.2488203367764 1018.4830877403529 2 510.75048828125 MULTI HCD FTMS 0 0 0 961 1732.3431396484375 0.4239229784882169 -1 0.00760650634765625 2 Unmodified _AEASHVSRY_ ENSG00000176915|ENST00000357997|ANKLE2;ENST00000439231.6_1_12:133310604-133318035:-|nuORF;ENST00000538591.5_1_12:133311987-133319805:-|nuORF;nc|ENSG00000176915|Q86XL3-2|ANKLE2 1.4819007175156935 0.3397831423917744 2 K 1 9 4.6041 0 0 0.45205 0 0 380.60987104289035 506.75473962955317 887.3646106724435 0 0 0 0 0 0 0 0 0 K 0.45205 - 1 + NaN NaN 95792.7 NaN 172 789 961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 967 18.023 NaN 40180 35 0 4989.4 0.411 + 3613 EKQIKKQR 8 33 529.3270145257062 1056.6394761182123 2 529.3272705078125 MULTI HCD FTMS 0 0 0 966 12104.236328125 0.5022295085421341 -5 0.040386199951171875 1 Unmodified _EKQIKKQR_ REV__ENSG00000146350|ENST00000398212|TBC1D32;REV__nc|ENSG00000146350|Q96NH3-4|TBC1D32 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103695.8 NaN 173 792 966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 969 18.031 NaN 45244 35 0 5406.6 0.411 -1 YVMYLAIK 8 31 508.7775650056455 1015.540577078091 2 508.7779846191406 MULTI HCD FTMS 0 0 0 968 14278.560546875 0.3697678015631904 -9 0.07131385803222656 1 Oxidation (M) _YVM(Oxidation (M))YLAIK_ tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1 5.760428011301431 0.5334459684533844 2 A[K{I|L}] 3 -1 14.265 0 0 1.4046 0 0 685.3146229474625 0 685.3146229474625 0 14.264771768807593 0 0 0 0.3807196863200844 0 0 0 A[K{I|L}] 1.4046 + + 1 NaN NaN 97528.3 NaN 174 793 968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 972 18.046 NaN 31603 35 0 4736.5 0.411 + 31153 VTYEMDHG 8 21 476.1982328024408 NaN 0 476.1985778808594 PEAK HCD FTMS 0 0 0 971 8191.89404296875 0.5656814653109822 -11 0.0868377685546875 1 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97523.4 NaN 175 795 971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 974 18.054 NaN 182970 35 0 27145 0.327 -1 0 41 505.73026959377 1009.44598625434 2 505.73016357421875 MULTI HCD FTMS 0 0 0 973 36105.078125 0.10721413847200882 21 -0.17655372619628906 1 NaN NaN 2 HS{I|L} 3 -1 26.198 0 0 2.5953 0 0 654.2618275373062 0 654.2618275373062 0 6.73393743112328 0 0 0 0 0 0 0 HS{I|L} 2.5953 - 5 NaN NaN 123110.7 NaN 176 796 973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 975 18.059 NaN 38727 35 0 11132 0.261 -1 0 27 532.7429316214877 1063.4713103097754 2 532.7435302734375 MULTI HCD FTMS 0 0 0 973 11747.7197265625 0.04047480032683285 201 -1.69464111328125 2 NaN NaN 2 {[QG]|[NA]}E 3 -1 7.4473 0 0 0.70028 0 0 0 746.3292940729124 746.3292940729124 5.45757490560675 0 0 0 0 0 0 0 0 {[QG]|[NA]}E 0.70028 - 2 + NaN NaN 84448.9 NaN 177 796 973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 978 18.072 NaN 23554 35 0 6141.1 0.327 -1 0 11 554.7780447605769 1107.5415365879537 2 554.7775268554688 MULTI HCD FTMS 0 0 0 977 5244.41015625 0.026595497273987728 -18 0.14339828491210938 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3981 0 0 942.46000690221 0 942.46000690221 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3981 - 2 + NaN NaN 81797.4 NaN 178 798 977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 979 18.076 NaN 44388 35 0 8527.2 0.261 + -1 PHMKWTKW 8 21 565.2834670964969 NaN 0 565.283447265625 PEAK HCD FTMS 0 0 0 977 3809.1533203125 0.49959538718334146 -1 0.0075550079345703125 2 Oxidation (M) _PHM(Oxidation (M))KWTKW_ REV__ENST00000477049.1_1_9:135139492-135139582:-|nuORF 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110713.9 NaN 179 798 977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 982 18.089 NaN 36036 35 0 4328.2 0.412 + 33916 YLPYEHGPK 9 22 552.2790365209164 1102.5435201086327 2 552.2797241210938 MULTI HCD FTMS 0 0 0 981 4203.8291015625 0.18099700875174102 11 -0.08808326721191406 1 Unmodified _YLPYEHGPK_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88167.6 NaN 180 800 981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 984 18.097 NaN 50238 35 0 16341 0.411 -1 0 32 554.7780447605769 1107.5415365879537 2 554.7783203125 MULTI HCD FTMS 0 0 0 983 22469.00390625 0.11394500321942501 -15 0.1223297119140625 1 NaN NaN 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H 3 -1 15.458 0 0 1.3957 0 0 0 710.3582893244879 710.3582893244879 13.863781092484688 0 0 0 0 0.5 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H 1.3957 - 3 + NaN NaN 103888 NaN 181 801 983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 986 18.105 NaN 48115 35 0 12284 0.411 -1 SSFDMAQKR 9 30 543.2556779097637 1084.4968028863273 2 543.2557983398438 MULTI HCD FTMS 0 0 0 985 14037.7626953125 0.46722665165092936 4 -0.03291893005371094 1 Oxidation (M) _SSFDM(Oxidation (M))AQKR_ ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5;nc|ENSG00000143248|O15539-3|RGS5 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95800.6 NaN 182 802 985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 990 18.128 NaN 30810 35 0 11276 0.327 + -1 NLMVMMLL 8 12 527.752823325093 1053.491093716986 2 527.7525634765625 MULTI HCD FTMS 0 0 0 989 5260.1552734375 0.40661301876026035 4 -0.03352165222167969 1 Acetyl (Protein N-term),3 Oxidation (M) _(Acetyl (Protein N-term))NLM(Oxidation (M))VM(Oxidation (M))M(Oxidation (M))LL_ REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91292.7 NaN 183 805 989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 991 18.133 NaN 34403 35 0 8813.2 0.261 + 28193 TKRGQAALDR 10 14 558.3173252080096 NaN 0 558.3175659179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TKRGQAALDR_ ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117280.7 NaN 184 805 989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 993 18.138 NaN 32243 35 0 5738.4 0.411 -1 0 30 529.3270145257062 1056.6394761182123 2 529.3270263671875 MULTI HCD FTMS 0 0 0 992 10459.7509765625 0.4339964496748912 9 -0.06939125061035156 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97370.9 NaN 185 806 992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 996 18.154 NaN 47087 35 0 5380.9 0.411 + 23746 RREDEAKI 8 38 508.7775650056455 1015.540577078091 2 508.7774963378906 MULTI HCD FTMS 0 0 0 995 17799.076171875 0.46093758851415984 6 -0.046268463134765625 1 Unmodified _RREDEAKI_ ENSG00000100154|ENST00000397906|TTC28 10.073929032068715 0.5196730168178844 2 AK{I|L} 3 5 30.005 0 0 2.9546 0 0 685.3144495317447 0 685.3144495317447 0 30.00508444608478 0 0 0 0.3807196863200844 0 0 0 + AK{I|L} 2.9546 + + 3 NaN NaN 111699.1 NaN 186 808 995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 998 18.162 NaN 28619 35 0 6012.3 0.411 + 18616 MWKVNVRK 8 25 530.808754866745 NaN 0 530.8096923828125 PEAK HCD FTMS 0 0 0 997 6480.43896484375 0.7039960446188718 1 -0.007986068725585938 1 Unmodified _MWKVNVRK_ ENSG00000118816|ENST00000237654|CCNI 0.6903765706972694 0.38822285293237185 2 G 1 8 2.4743 0 0 0.23351 0 0 529.7872352200148 469.76682459049067 999.5540598105056 0 0 0 0 0 0 0 0 0 G 0.23351 - 1 + NaN NaN 113568.1 NaN 187 809 997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1003 18.192 NaN 21093 35 0 2272.9 0.411 + -1 TKMTNEGMSPC 11 28 615.7436726670838 1229.4727924009676 2 615.7427978515625 MULTI HCD FTMS 0 0 0 1002 8576.5927734375 0.7899364232225234 -3 0.02225494384765625 1 2 Oxidation (M) _TKM(Oxidation (M))TNEGM(Oxidation (M))SPC_ REV__ENSG00000025293|ENST00000374012|PHF20;REV__ENST00000485604.1_1_20:34458944-34459771:+|nuORF 0 0.41892066650488113 2 S 1 -1 11.99 0 0 0.97519 0 0 902.4167448929583 237.00202356510002 1139.4187684580584 0 0 0 0 0 0.5 0 0 0 S 0.97519 + + 2 + NaN NaN 94265.7 NaN 188 813 1002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1006 18.208 NaN 154030 35 0 24528 0.327 -1 0 43 505.73026959377 1009.44598625434 2 505.7302551269531 MULTI HCD FTMS 0 0 0 1005 8137.53662109375 0.024164439558735564 40 -0.3315410614013672 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 107490.6 NaN 189 815 1005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1007 18.212 NaN 24159 35 0 4015.9 0.261 + 23624 RPPLNTLVPSS 11 23 590.8382900960955 NaN 0 590.814697265625 PEAK HCD FTMS 0 0 0 1005 1799.019775390625 0.8466055171935214 -1 0.007549285888671875 2 Unmodified _RPPLNTLVPSS_ REV__ENST00000359523.6_1_1:167759427-167759691:+|nuORF 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102585.8 NaN 190 815 1005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1009 18.217 NaN 335870 35 0 116700 0.327 + -1 EALRLMTQM 9 37 554.7780447605769 1107.5415365879537 2 554.7781982421875 MULTI HCD FTMS 0 0 0 1008 197191.65625 1 0 0 1 Oxidation (M) _EALRLMTQM(Oxidation (M))_ REV__ENSG00000171495|ENST00000399564|MROH2B 6.723162845929126 0.3000504726104499 2 DAAHPT 6 -1 57.652 0 0 5.2054 0 0 0 512.2584322565061 512.2584322565061 33.96205332875283 0 0 0 0 0.5 0 0.8494850021680094 0 DAAHPT 5.2054 - 69 + NaN NaN 148208.1 NaN 191 816 1008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1010 18.222 NaN 37607 35 0 8359.1 0.261 + -1 KVCYYLER 8 17 565.7868085214885 NaN 0 565.7999267578125 PEAK HCD FTMS 0 0 0 1008 2126.4150390625 0.2737751121466961 6 -0.05313873291015625 2 Carbamidomethyl (C) _KVC(Carbamidomethyl (C))YYLER_ REV__ENSG00000110514|ENST00000706887|MADD;REV__nc|ENSG00000110514|Q8WXG6-2|MADD;REV__nc|ENSG00000110514|Q8WXG6-3|MADD;REV__nc|ENSG00000110514|Q8WXG6-4|MADD;REV__nc|ENSG00000110514|Q8WXG6-5|MADD;REV__nc|ENSG00000110514|Q8WXG6-6|MADD;REV__nc|ENSG00000110514|Q8WXG6-7|MADD;REV__nc|ENSG00000110514|Q8WXG6-8|MADD;REV__nc|ENSG00000110514|Q8WXG6|MADD 0.7936320650641473 0.38822285293237185 2 K 1 -1 3.0989 0 0 0.27435 0 0 582.788264404502 415.6593111627563 998.4475755672584 0 0 0 0 0 0 0 0 0 K 0.27435 + + 1 + NaN NaN 85631.5 NaN 192 816 1008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1011 18.225 NaN 33067 35 0 8027.8 0.261 + 14929 LLEKIKKMKV 10 20 615.4037186134154 NaN 0 615.4033813476562 PEAK HCD FTMS 0 0 0 1008 4597.98876953125 0.5886383633936423 24 -0.1904926300048828 3 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 1.4819007175156935 0.33891598740166873 2 S 1 -1 4.6041 0 0 0.37468 0 0 884.4724935239027 254.27094446353752 1138.7434379874403 0 0 0 0 0 0 0 0 0 S 0.37468 - 1 + NaN NaN 101615.8 NaN 193 816 1008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1013 18.231 NaN 62581 35 0 22455 0.327 -1 SSFDMAQKR 9 25 543.2556915682463 1084.4968302032926 2 543.2557373046875 MULTI HCD FTMS 0 0 0 1012 35657.66796875 1 0 0 1 Oxidation (M) _SSFDM(Oxidation (M))AQKR_ ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5;nc|ENSG00000143248|O15539-3|RGS5 6.2057823575117 0.30397260197431997 2 {M(Oxidation (M))|F} 1 -1 8.4113 0 0 0.77559 0 0 436.1577321581738 498.27720056705317 934.434932725227 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 0.77559 + + 3 + NaN NaN 107031.2 NaN 194 817 1012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1014 18.235 NaN 80113 35 0 13460 0.263 + -1 YFCWFFAC 8 29 400.8262168067076 NaN 0 400.34991455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _YFC(Carbamidomethyl (C))WFFAC(Carbamidomethyl (C))_ REV__ENST00000497888.1_1_2:128260300-128262356:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114388.1 NaN 195 817 1012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1021 18.278 NaN 63342 35 0 5792.9 0.411 -1 HPESERISM 9 30 551.2531432586142 1100.4917335840282 2 551.2534790039062 MULTI HCD FTMS 0 0 0 1020 20071.037109375 0.11546603627812782 -21 0.17273521423339844 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 26.198 0 0 2.3806 0 0 0 734.3146431299635 734.3146431299635 13.1259189508755 0 0 0 0 0 0 0 0 HPE 2.3806 + + 4 + NaN NaN 105302 NaN 196 823 1020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1027 18.316 NaN 16536 35 0 2396.6 0.411 + -1 HECHKCVMN 9 24 615.7436726670838 1229.4727924009676 2 616.2440185546875 MULTI HCD FTMS 0 0 0 1026 7809.61181640625 0.8346712146629984 8 -0.06139373779296875 1 2 Carbamidomethyl (C),Oxidation (M) _HEC(Carbamidomethyl (C))HKC(Carbamidomethyl (C))VM(Oxidation (M))N_ REV__ENSG00000135093|ENST00000257548|USP30;REV__ENST00000467307.1_1_12:109509452-109519261:+|nuORF 0.5247636613948944 0.34703895399870666 2 SV 2 -1 20.969 0 0 1.7055 0 0 240.02206105506758 800.3267916315061 1040.3488526865738 0 0 0 0 0 1 0 0 0 SV 1.7055 - 5 + NaN NaN 99258.2 NaN 197 828 1026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1031 18.339 NaN 103990 35 0 32727 0.411 + -1 EALRLMTQM 9 42 554.7780447605769 1107.5415365879537 2 554.778076171875 MULTI HCD FTMS 0 0 0 1030 48625.9609375 0.24659238561215746 15 -0.11523818969726562 1 Oxidation (M) _EALRLMTQM(Oxidation (M))_ REV__ENSG00000171495|ENST00000399564|MROH2B 6.723162845929126 0.3000504726104499 2 DAAHP 5 -1 25.713 0 0 2.3217 0 0 0 613.3052462213499 613.3052462213499 15.255762612236905 0 0 0 0 0.5 0 0 0 DAAHP 2.3217 - 15 + NaN NaN 113843.5 NaN 198 831 1030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1034 18.354 NaN 35306 35 0 7149.5 0.411 + -1 KCRGVSYES 9 29 543.2556915682463 1084.4968302032926 2 543.2557373046875 MULTI HCD FTMS 0 0 0 1033 8383.724609375 0.23511701933851667 16 -0.1352825164794922 1 Carbamidomethyl (C) _KC(Carbamidomethyl (C))RGVSYES_ REV__ENSG00000119927|ENST00000348367|GPAM 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95099.6 NaN 199 833 1033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1038 18.377 NaN 11784 35 0 2009.9 0.411 -1 WSYKTEICPP 10 16 640.802551855835 1279.5905507784698 2 640.8021850585938 MULTI HCD FTMS 0 0 0 1037 7679.5205078125 0.8493509787027955 -13 0.09906387329101562 1 Carbamidomethyl (C) _WSYKTEIC(Carbamidomethyl (C))PP_ ENST00000409652.4_1_22:36052503-36054741:+|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106011.9 NaN 200 836 1037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1042 18.4 NaN 291200 35 0 43135 0.411 + 9046 HPESERISM 9 55 551.2531432586142 1100.4917335840282 2 551.2533569335938 MULTI HCD FTMS 0 0 0 1041 137126.6875 0.78887179507923 -5 0.03783607482910156 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 60.07390631473393 0.0174780869009295 2 HPE{[ES]|[DT]|[{I|L}C]}[R{I|L}]S{M(Oxidation (M))|F} 9 0 + 53.975 0 0 4.9046 4.9046 91.449 0 0 0 30.263480968738463 11.539843494254995 11.539843494254995 53.974856131339166 0 1.2302046884880937 0 1.1549471895720984 0 + + HPE{[ES]|[DT]|[{I|L}C]}[R{I|L}]S{M(Oxidation (M))|F} 4.9046 + + 58 + NaN NaN 175694 NaN 201 839 1041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1044 18.408 NaN 301080 35 0 43951 0.411 + 9047 HPESERISM 9 48 551.2531432586142 1100.4917335840282 2 551.2533569335938 MULTI HCD FTMS 0 0 0 1043 160983.703125 0.9261180677373294 -4 0.030918121337890625 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 43.77239144664712 0.04802738721622131 2 HPESE 5 4 50.534 0 0 4.5919 0 0 0 518.2382906549436 518.2382906549436 34.73197507588033 0 0 0 0 0.7614393726401688 0 1.1861818737241734 0 + HPESE 4.5919 + + 58 + NaN NaN 175961.8 NaN 202 840 1043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1048 18.431 NaN 30534 35 0 5556.7 0.411 + 29755 VDWMWPRR 8 32 573.2862676833842 1144.5579824335682 2 573.2861328125 MULTI HCD FTMS 0 0 0 1047 4273.6962890625 0.37793545053032984 1 -0.00797271728515625 1 Unmodified _VDWMWPRR_ ENST00000291295.13_1_19:47112759-47113158:+|nuORF 2.302733041254933 0.5385759549224092 2 G 1 8 5.7133 0 0 0.49917 0 0 571.800549427512 512.7121065729124 1084.5126560004244 0 0 0 0 0 0.2614393726401688 0 0 0 G 0.49917 - 1 + NaN NaN 98027.1 NaN 203 843 1047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1053 18.461 NaN 27808 35 0 7062.3 0.327 + 16964 LYIDYYYLL 9 19 619.8206810125093 NaN 0 619.8203735351562 PEAK HCD FTMS 0 0 0 1052 8093.919921875 0.5452150261737846 -26 0.19805335998535156 1 Unmodified _LYIDYYYLL_ REV__ENSG00000113716|ENST00000502717|HMGXB3 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87577.9 NaN 204 847 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1054 18.466 NaN 35234 35 0 6702.3 0.261 -1 NMVLQKMAGT 10 20 554.7780447605769 1107.5415365879537 2 554.7779541015625 MULTI HCD FTMS 0 0 0 1052 7260.525390625 0.03681963795374836 31 -0.2586174011230469 2 Oxidation (M) _NMVLQKM(Oxidation (M))AGT_ ENST00000518319.5_1_8:94767110-94770759:+|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101207.7 NaN 205 847 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1055 18.469 NaN 32805 35 0 6477.8 0.261 -1 0 21 567.2843998415709 1132.5542467499417 2 567.284912109375 MULTI HCD FTMS 0 0 0 1052 5766.95263671875 0.21096576139463707 -8 0.06131744384765625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88854.6 NaN 206 847 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1056 18.472 NaN 15557 35 0 3338 0.261 -1 DHMMWWFY 8 14 624.2361617921181 NaN 0 624.2366943359375 PEAK HCD FTMS 0 0 0 1052 4667.99755859375 0.5663678285153068 12 -0.10872459411621094 4 2 Oxidation (M) _DHM(Oxidation (M))M(Oxidation (M))WWFY_ ENST00000497113.1_1_1:8025465-8030966:+|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97490.2 NaN 207 847 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1057 18.476 NaN 79836 35 0 12172 0.264 -1 0 23 400.3493957519531 NaN 0 400.3493957519531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98848.9 NaN 208 847 1052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1059 18.481 NaN 23216 35 0 6026.4 0.411 + 7078 FQYQTHDL 8 25 526.2452981850755 1050.476043436951 2 526.2445068359375 MULTI HCD FTMS 0 0 0 1058 4189.400390625 0.2803528045926158 -10 0.08864402770996094 1 Unmodified _FQYQTHDL_ REV__ENSG00000078814|ENST00000262873|MYH7B;REV__nc|ENSG00000078814|A7E2Y1|MYH7B 0.6903765706972694 0.5409681170271811 2 P 1 -1 3.0989 0 0 0.295 0 0 524.6872383605822 425.71125208072505 950.3984904413073 0 0 0 0 0 0 0 0 0 P 0.295 - 1 + NaN NaN 90596.5 NaN 209 848 1058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1061 18.489 NaN 21211 35 0 5448.4 0.327 + 7079 FQYQTHDL 8 16 526.2452981850755 1050.476043436951 2 526.2450561523438 MULTI HCD FTMS 0 0 0 1060 5094.49609375 0.34092140514071567 -9 0.08143997192382812 1 Unmodified _FQYQTHDL_ REV__ENSG00000078814|ENST00000262873|MYH7B;REV__nc|ENSG00000078814|A7E2Y1|MYH7B 0.6903765706972694 0.5409681170271811 2 P 1 -1 4.6041 0 0 0.43829 0 0 671.1601997863635 279.2315767877563 950.3917765741198 0 0 0 0 0 0 0 0 0 P 0.43829 - 1 + NaN NaN 92032.5 NaN 210 849 1060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1062 18.494 NaN 9060.7 35 0 4553.5 0.261 + 30952 VRMILGWHW 9 7 599.3212890625 NaN 0 599.3212890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VRMILGWHW_ ENST00000489138.5_1_7:6618325-6620357:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89368.7 NaN 211 849 1060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1064 18.499 NaN 12364 35 0 2769 0.411 + -1 IRQCHTRYM 9 18 640.802551855835 1279.5905507784698 2 640.8018798828125 MULTI HCD FTMS 0 0 0 1063 3367.518310546875 0.3724457757424881 1 -0.00803375244140625 1 Carbamidomethyl (C),Oxidation (M) _IRQC(Carbamidomethyl (C))HTRYM(Oxidation (M))_ REV__ENSG00000111783|ENST00000392842|RFX4;REV__ENST00000536688.5_1_12:106995054-107126892:+|nuORF;REV__nc|ENSG00000111783|Q33E94-2|RFX4;REV__nc|ENSG00000111783|Q33E94-3|RFX4;REV__nc|ENSG00000111783|Q33E94-4|RFX4 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88856.7 NaN 212 850 1063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1066 18.507 NaN 35364 35 0 6177.9 0.411 + 16870 LYFARDDW 8 32 543.255630117811 1084.496707302422 2 543.2553100585938 MULTI HCD FTMS 0 0 0 1065 8448.2939453125 0.737257982978146 -6 0.06091880798339844 1 Unmodified _LYFARDDW_ REV__ENSG00000130193|ENST00000336138|THEM6 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105476 NaN 213 851 1065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1068 18.515 NaN 26400 35 0 5820.7 0.411 -1 RCINCCLI 8 27 526.2452981850755 1050.476043436951 2 526.2460327148438 MULTI HCD FTMS 0 0 0 1067 6437.634765625 0.4308036456779542 -6 0.061595916748046875 1 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))INC(Carbamidomethyl (C))CLI_ ENSG00000119729|ENST00000238738|RHOQ;ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF 0.7936320650641473 0.540814922690045 2 P 1 -1 0.9691 0 0 0.092253 0 0 524.6941963683947 425.71201502017817 950.406211388573 0 0 0 0 0 0 0 0 0 P 0.092253 - 1 + NaN NaN 99273.1 NaN 214 852 1067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1070 18.524 NaN 212720 35 0 32205 0.411 -1 HPESERISM 9 51 551.2531432586142 1100.4917335840282 2 551.2532348632812 MULTI HCD FTMS 0 0 0 1069 105164.7265625 0.6049988381902375 9 -0.06881523132324219 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 22.736283301280096 0.1639198954644489 2 HPE 3 -1 38.812 0 0 3.5268 0 0 0 734.3139825541022 734.3139825541022 19.999999999999996 0 0 0 0 0.5 0 0.7614393726401688 0 HPE 3.5268 + + 32 + NaN NaN 153543.2 NaN 215 853 1069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1074 18.546 NaN 36125 35 0 5676.9 0.411 + 31154 VTYEMDHG 8 31 476.1982328024408 NaN 0 476.1977233886719 PEAK HCD FTMS 0 0 0 1073 9401.6533203125 0.6492199482420141 50 -0.4136466979980469 1 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94180.7 NaN 216 856 1073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1077 18.562 NaN 15158 35 0 2350.3 0.411 + 20726 PFWHHKYHE 9 20 640.802551855835 1279.5905507784698 2 641.3041381835938 MULTI HCD FTMS 0 0 0 1076 4471.1083984375 0.5933613830365607 14 -0.11085700988769531 1 Unmodified _PFWHHKYHE_ REV__ENSG00000133639|ENST00000256015|BTG1;REV__ENSG00000159388|ENST00000290551|BTG2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86983.1 NaN 217 858 1076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1082 18.592 NaN 48702 35 0 9031.5 0.326 -1 MPQKERESI 9 24 567.2843998415709 1132.5542467499417 2 567.2845458984375 MULTI HCD FTMS 0 0 0 1081 24345.83203125 0.8906154280783086 7 -0.05760765075683594 1 Oxidation (M) _M(Oxidation (M))PQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 1.4819007175156935 0.3397831423917744 2 WWK 3 -1 8.9524 0 0 0.79046 0 0 0 629.2900484674436 629.2900484674436 8.952424927286843 0 0 0 0 0 0 0 0 WWK 0.79046 - 1 + NaN NaN 86709.8 NaN 218 862 1081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1083 18.597 NaN 33958 35 0 7923.2 0.261 -1 0 18 554.7780447605769 1107.5415365879537 2 554.77783203125 MULTI HCD FTMS 0 0 0 1081 4595.61474609375 0.023305320486113366 46 -0.38515663146972656 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95485.3 NaN 219 862 1081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1086 18.61 NaN 31511 35 0 11259 0.411 + 23832 RRRYKCDEC 9 27 614.7877502857984 NaN 0 614.7875366210938 PEAK HCD FTMS 0 0 0 1085 7489.7607421875 0.531115503113143 46 -0.3852577209472656 1 Unmodified _RRRYKCDEC_ ENSG00000196812|ENST00000340487|ZSCAN16 0.5247636613948944 0.2927039108006614 2 NH 2 9 4.464 0 0 0.36364 0 0 667.1961537924968 306.2418306940063 973.4379844865032 0 0 0 0 0 0 0 0 0 NH 0.36364 - 4 + NaN NaN 100052.1 NaN 220 864 1085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1088 18.618 NaN 11452 35 0 1770.7 0.411 -1 VQKKLMMMHC 10 20 640.802551855835 1279.5905507784698 2 640.8024291992188 MULTI HCD FTMS 0 0 0 1087 1511.818603515625 0.16720635216883528 15 -0.11974525451660156 1 2 Oxidation (M) _VQKKLM(Oxidation (M))M(Oxidation (M))MHC_ ENST00000394942.2_1_14:64066212-64066284:-|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91051.2 NaN 221 865 1087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1090 18.626 NaN 30420 35 0 5274.2 0.411 + 16871 LYFARDDW 8 29 543.255630117811 1084.496707302422 2 543.2554321289062 MULTI HCD FTMS 0 0 0 1089 3940.080078125 0.3438393017542388 9 -0.0712738037109375 1 Unmodified _LYFARDDW_ REV__ENSG00000130193|ENST00000336138|THEM6 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93070.9 NaN 222 866 1089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1092 18.634 NaN 20020 35 0 5663.8 0.411 + 7080 FQYQTHDL 8 25 526.2452981850755 1050.476043436951 2 526.244873046875 MULTI HCD FTMS 0 0 0 1091 5073.27978515625 0.33950161923754185 9 -0.07074737548828125 1 Unmodified _FQYQTHDL_ REV__ENSG00000078814|ENST00000262873|MYH7B;REV__nc|ENSG00000078814|A7E2Y1|MYH7B 0.6903765706972694 0.5409681170271811 2 P 1 -1 4.6041 0 0 0.43829 0 0 524.686689044176 425.7092379205688 950.3959269647448 0 0 0 0 0 0 0 0 0 P 0.43829 - 1 + NaN NaN 107082.8 NaN 223 867 1091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1094 18.642 NaN 76692 35 0 9448.1 0.411 -1 HPESERISM 9 35 551.2531432586142 1100.4917335840282 2 551.2535400390625 MULTI HCD FTMS 0 0 0 1093 22244.9453125 0.12797224420746822 24 -0.19641494750976562 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3147066705686 734.3147066705686 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 111509 NaN 224 868 1093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1096 18.65 NaN 28788 35 0 5358 0.411 -1 NAESGRGQVM 10 28 532.743204506831 NaN 0 532.7427368164062 PEAK HCD FTMS 0 0 0 1095 10079.806640625 0.584117638869758 -2 0.016082763671875 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 12.872603262515298 0.32916712473430193 2 E 1 -1 12.474 0 0 1.173 0 0 185.07861985174947 746.325562489714 931.4041823414634 0 0 0 0 0 0.6989700043360187 0 0 0 E 1.173 + + 3 + NaN NaN 92054.7 NaN 225 869 1095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1100 18.673 NaN 30508 35 0 5467.3 0.411 + -1 HFCARCAS 8 30 476.1982328024408 NaN 0 476.19805908203125 PEAK HCD FTMS 0 0 0 1099 12091.3330078125 0.8349525686667274 66 -0.5701999664306641 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94849.3 NaN 226 872 1099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1102 18.681 NaN 20841 35 0 5531.3 0.411 + -1 ERMMFPLG 8 27 498.73570615022544 995.4568593672509 2 498.7353210449219 MULTI HCD FTMS 0 0 0 1101 4727.5458984375 0.49511892809003727 5 -0.03901481628417969 1 Oxidation (M) _ERM(Oxidation (M))MFPLG_ REV__ENST00000535070.5_1_19:19412649-19416674:-|nuORF 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84379.4 NaN 227 873 1101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1104 18.689 NaN 40213 35 0 5345.5 0.412 -1 HADEKEALM 9 31 530.2422608735505 1058.469968813901 2 530.2422485351562 MULTI HCD FTMS 0 0 0 1103 14167.4013671875 0.5790388097665583 -15 0.11892318725585938 1 Oxidation (M) _HADEKEALM(Oxidation (M))_ ENSG00000182578|ENST00000675795|CSF1R 3.5964929083625545 0.32375295897743744 2 T 1 -1 5.4846 0 0 0.51816 0 0 63.99836241640907 890.3958834283811 954.3942458447902 0 0 0 0 0 0 0 0 0 T 0.51816 - 2 + NaN NaN 98252 NaN 228 874 1103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1108 18.712 NaN 33648 35 0 6688.2 0.411 -1 MPQKERESI 9 23 567.2843998415709 1132.5542467499417 2 567.2841796875 MULTI HCD FTMS 0 0 0 1107 12755.1123046875 0.4666055278309953 22 -0.1871967315673828 1 Oxidation (M) _M(Oxidation (M))PQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 1.4819007175156935 0.3397831423917744 2 WWK 3 -1 10.458 0 0 0.92336 0 0 0 629.2896212213499 629.2896212213499 10.45757490560675 0 0 0 0 0 0 0 0 WWK 0.92336 - 3 + NaN NaN 109035.4 NaN 229 877 1107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1111 18.727 NaN 19397 35 0 5129 0.327 + 28729 TSTAKPQSTTS 11 12 554.7784389474701 NaN 0 554.7784423828125 PEAK HCD FTMS 0 0 0 1110 5167.763671875 0.8367115929473735 -1 0.0076045989990234375 1 Unmodified _TSTAKPQSTTS_ ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109306.2 NaN 230 879 1110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1112 18.732 NaN 84323 35 0 12837 0.264 -1 0 31 400.3499490484008 NaN 0 400.3502197265625 PEAK HCD FTMS 0 0 0 1110 1161.693115234375 0.3062892448996315 1 -0.00994110107421875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99774 NaN 231 879 1110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1116 18.752 NaN 25965 35 0 5580.3 0.411 + -1 NKAEDCVHI 9 24 543.255630117811 1084.496707302422 2 543.2559204101562 MULTI HCD FTMS 0 0 0 1115 2852.2412109375 0.24890677523237417 25 -0.21518898010253906 1 Carbamidomethyl (C) _NKAEDC(Carbamidomethyl (C))VHI_ REV__ENSG00000162929|ENST00000402291|SANBR;REV__nc|ENSG00000162929|Q6NSI8-2|SANBR;REV__nc|ENSG00000162929|Q6NSI8-3|SANBR;REV__nc|ENSG00000162929|Q6NSI8-4|SANBR 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84035.1 NaN 232 882 1115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1118 18.76 NaN 54455 35 0 5591.6 0.411 -1 HPESERISM 9 35 551.2531432586142 1100.4917335840282 2 551.2529907226562 MULTI HCD FTMS 0 0 0 1117 7778.82275390625 0.04475054405056771 39 -0.33072471618652344 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3147066705686 734.3147066705686 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 115886.2 NaN 233 883 1117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1120 18.768 NaN 389220 35 0 37920 0.411 + 25971 SPDHSDHTL 9 68 504.72260309113955 1007.4306532490791 2 504.7226257324219 MULTI HCD FTMS 0 0 0 1119 136868.59375 0.39997192759694383 -9 0.07137680053710938 1 Unmodified _SPDHSDHTL_ ENSG00000136205|ENST00000311160|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 111.28704002717404 0.0027322905094575235 2 [PS]DHSDHT{I|L} 9 0 + 68.471 0 0 6.7966 6.7966 93.795 0 0 0 19.366130211356058 37.497232716910204 19.366130211356058 33.44599506265164 0 1.579689690656103 1.5228787452803376 1.1307196863200843 0 + + [PS]DHSDHT{I|L};[PS]DHVH{[ET]|[MV]}S;[HD][PS]SDHT{I|L};[HD][YR]T{[ET]|[MV]}S 6.7966;3.4767;2.7377;0.26753 +;-;-;- + 363 NaN NaN 209457.6 NaN 234 884 1119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1123 18.784 NaN 31359 35 0 5530.5 0.411 -1 QCPCHAHV 8 29 476.1982328024408 NaN 0 476.1982727050781 PEAK HCD FTMS 0 0 0 1122 10561.146484375 0.7292873647179287 80 -0.7118625640869141 1 Carbamidomethyl (C) _QC(Carbamidomethyl (C))PCHAHV_ ENSG00000130702|ENST00000252999|LAMA5 2.577480529830294 0.38822285293237185 2 Y 1 -1 1.9897 0 0 0.20936 0 0 557.087980642188 227.20362268619377 784.2916033283817 0 0 0 0 0 0 0 0 0 Y 0.20936 - 1 + NaN NaN 103143.8 NaN 235 886 1122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1125 18.792 NaN 23095 35 0 5605.2 0.411 -1 WITVCGCR 8 30 526.2445025993201 NaN 0 526.2443237304688 PEAK HCD FTMS 0 0 0 1124 4078.613525390625 0.5405638702739979 4 -0.032169342041015625 1 2 Carbamidomethyl (C) _WITVC(Carbamidomethyl (C))GC(Carbamidomethyl (C))R_ ENST00000467703.1_1_3:113789629-113795608:+|nuORF 0.6903765706972694 0.38822285293237185 2 P 1 -1 2.2185 0 0 0.21119 0 0 524.6833888882901 425.7103365533813 950.3937254416714 0 0 0 0 0 0 0 0 0 P 0.21119 - 1 + NaN NaN 89720.5 NaN 236 887 1124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1127 18.8 NaN 15998 35 0 4993.3 0.411 + 8757 HHQNVLFHH 9 15 584.789319823751 NaN 0 584.7890625 PEAK HCD FTMS 0 0 0 1126 5279.66015625 0.5510220929775099 11 -0.09910774230957031 1 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108537.3 NaN 237 888 1126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1129 18.808 NaN 47216 35 0 5813.5 0.411 -1 HADEKEALM 9 36 530.2422608735505 1058.469968813901 2 530.2424926757812 MULTI HCD FTMS 0 0 0 1128 24467.1015625 1 0 0 1 Oxidation (M) _HADEKEALM(Oxidation (M))_ ENSG00000182578|ENST00000675795|CSF1R 21.536976647645854 0.1742816388551942 2 HAD 3 -1 32.435 0 0 3.0643 0 0 0 732.3211763971311 732.3211763971311 11.95046257204389 0 0 0 0 0.9247425010840047 0 0 0 HAD 3.0643 + + 12 + NaN NaN 103404.4 NaN 238 889 1128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1131 18.816 NaN 7796.9 35 0 1891 0.411 + -1 FTGAFCCFFM 10 15 644.2542724609375 NaN 0 644.2542724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _FTGAFC(Carbamidomethyl (C))C(Carbamidomethyl (C))FFM_ REV__CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;REV__ENSG00000134255|ENST00000357172|CEPT1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96279.9 NaN 239 890 1130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1134 18.838 NaN 36025 35 0 6949.9 0.411 + 3639 ELFYFLWL 8 21 565.8001639283256 NaN 0 565.7996826171875 PEAK HCD FTMS 0 0 0 1133 7125.9609375 0.607540377753233 -21 0.1727447509765625 1 Unmodified _ELFYFLWL_ REV__ENST00000480769.5_1_1:185266844-185267009:-|nuORF 0.6903765706972694 0.38822285293237185 2 N 1 -1 6.2371 0 0 0.55216 0 0 564.7334322494261 447.7923678033813 1012.5258000528074 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.55216 - 1 + NaN NaN 110934.2 NaN 240 892 1133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1137 18.854 NaN 30294 35 0 12098 0.327 + 34858 YSCLMPLTIE 10 11 585.282658174076 1168.550763414952 2 585.2832641601562 MULTI HCD FTMS 0 0 0 1136 12406.8251953125 0.6688201388916674 -18 0.14924049377441406 1 Unmodified _YSCLMPLTIE_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;REV__RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93087.4 NaN 241 894 1136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1138 18.858 NaN 29756 35 0 9760.8 0.261 -1 RCLQRKMT 8 19 554.7901614599391 NaN 0 554.7783813476562 PEAK HCD FTMS 0 0 0 1136 1454.859375 0.7807226320649727 1 -0.009906768798828125 2 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))LQRKM(Oxidation (M))T_ ENSG00000182782|ENST00000328880|HCAR2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88673 NaN 242 894 1136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1140 18.864 NaN 60296 35 0 11637 0.411 -1 QDQSCFCCA 9 30 531.1782688649585 1060.3419847967168 2 531.1783447265625 MULTI HCD FTMS 0 0 0 1139 15317.1298828125 0.7093807142046279 1 -0.008031845092773438 1 Carbamidomethyl (C) _QDQSCFC(Carbamidomethyl (C))CA_ ENSG00000196998|ENST00000376372|WDR45;ENST00000376357.1_1_X:48935155-48937742:-|nuORF;ENST00000465431.6_1_X:48935109-48935754:-|nuORF;nc|ENSG00000196998|Q9Y484-2|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98551.3 NaN 243 895 1139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1143 18.879 NaN 39335 35 0 5171.7 0.327 + -1 HFCARCAS 8 28 476.1982328024408 NaN 0 476.1980895996094 PEAK HCD FTMS 0 0 0 1142 9195.2236328125 0.6349651925657104 91 -0.7994632720947266 1 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 0.7936320650641473 0.38822285293237185 2 S 1 -1 1.5938 0 0 0.1677 0 0 456.5548995875004 403.7779635065063 860.3328630940067 0 0 0 0 0 0 0 0 0 S 0.1677 + + 1 + NaN NaN 100983.4 NaN 244 897 1142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1144 18.884 NaN 30439 35 0 10724 0.261 + -1 KCCCICLW 8 19 543.2241165125425 NaN 0 543.256103515625 PEAK HCD FTMS 0 0 0 1142 1614.8192138671875 0.32037670700401666 2 -0.019842147827148438 2 2 Carbamidomethyl (C) _KC(Carbamidomethyl (C))C(Carbamidomethyl (C))CICLW_ REV__ENSG00000137261|ENST00000378214|KIAA0319;REV__nc|ENSG00000137261|Q5VV43-2|KIAA0319;REV__nc|ENSG00000137261|Q5VV43-3|KIAA0319 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87135.7 NaN 245 897 1142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1146 18.889 NaN 666140 35 0 87607 0.327 + 25972 SPDHSDHTL 9 74 504.72260309113955 1007.4306532490791 2 504.72265625 MULTI HCD FTMS 0 0 0 1145 299910.75 0.876431016772576 5 -0.04540443420410156 1 Unmodified _SPDHSDHTL_ ENSG00000136205|ENST00000311160|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 144.35026110057638 1.4798765981150827E-05 2 [PS]DHSDHT{I|L} 9 0 + 79.527 0 0 7.8941 7.8941 89.236 0 0 0 4.744237387763093 15.38602963213036 4.744237387763093 4.744237387763093 0 2.173877368056628 1.5228787452803376 1.1747425010840047 0 + + [PS]DHSDHT{I|L};[DP]SHSDHT{I|L};[PS]DHS[HS]E{I|L};[DP]SHS[HS]E{I|L};[PS]DHVH{[ET]|[MV]}S;[DP]SHVH{[ET]|[MV]}S;[HD][PS]SDHT{I|L};[HD][PS]S[HS]E{I|L};[HD][YR]T{[ET]|[MV]}S;[HD][PS]VH{[ET]|[MV]}S 7.8941;7.4231;5.2315;4.7605;4.5409;4.0699;3.7085;1.0459;0.80615;0.35526 +;-;-;-;-;-;-;-;-;- + 606 NaN NaN 206737.6 NaN 246 898 1145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1147 18.894 NaN 50201 35 0 9441.2 0.261 -1 HQWPMTAM 8 25 509.21849537291985 1016.4224378126397 2 509.2192077636719 MULTI HCD FTMS 0 0 0 1145 14814.984375 0.7342884840008295 -2 0.017452239990234375 2 Oxidation (M) _HQWPMTAM(Oxidation (M))_ OR5B12|p.F111Sfs*24|1|0.21|ENSG00000172362|chr11:58439820-58439820|A/-|frameshift_variant 12.531546534597751 0.5015908124873912 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.0154 0 0 851.3766442108804 0 851.3766442108804 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0154 + + 3 + NaN NaN 107110.2 NaN 247 898 1145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1150 18.907 NaN 36801 35 0 5980.9 0.411 + -1 HKSKSPECE 9 25 551.2531432586142 1100.4917335840282 2 551.7545776367188 MULTI HCD FTMS 0 0 0 1149 4117.1025390625 0.04280883454482669 58 -0.5220355987548828 1 Carbamidomethyl (C) _HKSKSPEC(Carbamidomethyl (C))E_ REV__ENSG00000165494|ENST00000690938|PCF11;REV__PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96341.7 NaN 248 900 1149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1152 18.915 NaN 23616 35 0 5840.8 0.327 -1 0 19 526.2453294958646 1050.476106058529 2 526.244873046875 MULTI HCD FTMS 0 0 0 1151 4508.01171875 0.1468978274656885 -23 0.19477272033691406 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83537.5 NaN 249 901 1151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1153 18.919 NaN 34545 35 0 9339.8 0.261 + 16267 LQGYKNRN 8 17 496.76716622435237 991.5197795155048 2 497.2688903808594 MULTI HCD FTMS 0 0 0 1151 1701.5040283203125 0.22065782645711643 -6 0.050975799560546875 2 Unmodified _LQGYKNRN_ ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100960.8 NaN 250 901 1151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1155 18.925 NaN 20144 35 0 4524.4 0.327 + 25446 SETPKNRY 8 16 497.7511922111396 993.4878314890792 2 497.7509765625 MULTI HCD FTMS 0 0 0 1154 6078.57666015625 0.400094469014973 -7 0.06092643737792969 1 Unmodified _SETPKNRY_ ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-1|SRL;nc|ENSG00000185739|Q86TD4-3|SRL 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98352.7 NaN 251 902 1154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1156 18.929 NaN 43568 35 0 8715.1 0.261 + 18739 MYYTPGGY 8 27 476.1982328024408 NaN 0 476.1979675292969 PEAK HCD FTMS 0 0 0 1154 9436.693359375 0.6516395963157636 96 -0.8316001892089844 2 Unmodified _MYYTPGGY_ REV__tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108147 NaN 252 902 1154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1158 18.935 NaN 29142 35 0 5531 0.327 + -1 YTDGTMLRS 9 19 530.2422608735505 1058.469968813901 2 530.2425537109375 MULTI HCD FTMS 0 0 0 1157 6220.166015625 0.2542256997518032 14 -0.11806488037109375 1 Oxidation (M) _YTDGTM(Oxidation (M))LRS_ REV__ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;REV__ENSG00000097007|ENST00000318560|ABL1;REV__ENSG00000143322|ENST00000502732|ABL2;REV__ENST00000504324.1_1_1:179086401-179112191:-|nuORF;REV__ENST00000509520.5_1_1:179086401-179112191:-|nuORF;REV__nc|ENSG00000097007|P00519-2|ABL1;REV__nc|ENSG00000143322|P42684-10|ABL2;REV__nc|ENSG00000143322|P42684-2|ABL2;REV__nc|ENSG00000143322|P42684-3|ABL2;REV__nc|ENSG00000143322|P42684-4|ABL2;REV__nc|ENSG00000143322|P42684-5|ABL2;REV__nc|ENSG00000143322|P42684-6|ABL2;REV__nc|ENSG00000143322|P42684-7|ABL2;REV__nc|ENSG00000143322|P42684-8|ABL2 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86068.5 NaN 253 903 1157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1159 18.939 NaN 10540 35 0 4011.3 0.261 -1 SCMGWDCRRT 10 9 644.2542427735585 NaN 0 644.2546997070312 PEAK HCD FTMS 0 0 0 1157 4385.04931640625 0.7290345106506025 1 -0.009950637817382812 2 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))M(Oxidation (M))GWDCRRT_ ENST00000330551.3_1_21:46354729-46357558:-|nuORF 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85686.1 NaN 254 903 1157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1161 18.945 NaN 32610 35 0 12379 0.411 + -1 FEWCKRML 8 23 585.282658174076 1168.550763414952 2 585.2835083007812 MULTI HCD FTMS 0 0 0 1160 10637.9833984375 0.5734664124032588 -8 0.07280731201171875 1 Carbamidomethyl (C) _FEWC(Carbamidomethyl (C))KRML_ REV__ENSG00000162434|ENST00000342505|JAK1 0.6903765706972694 0.5409681170271811 2 M 1 -1 3.9794 0 0 0.34054 0 0 510.0757400768644 524.4074801080686 1034.483220184933 0 0 0 0 0 0 0 0 0 M 0.34054 + + 1 + NaN NaN 104731.3 NaN 255 904 1160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1165 18.968 NaN 99293 35 0 35322 0.327 + -1 PLCRQCFSHL 10 36 439.87748208344175 1316.6106168505253 3 439.8774719238281 MULTI HCD FTMS 0 0 0 1164 25828.78515625 0.6196593235352441 -4 0.032947540283203125 1 2 Carbamidomethyl (C) _PLC(Carbamidomethyl (C))RQC(Carbamidomethyl (C))FSHL_ REV__ENSG00000122779|ENST00000343526|TRIM24;REV__nc|ENSG00000122779|O15164-2|TRIM24;REV__TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant 1.7422754331352037 0.46608156381052757 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 107599.9 NaN 256 907 1164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1166 18.972 NaN 38084 35 0 9324.9 0.261 + 26307 SRSETRDVY 9 14 556.76991628662 1111.5252796400398 2 556.770263671875 MULTI HCD FTMS 0 0 0 1164 3781.383056640625 0.06300730732125658 -18 0.15947723388671875 2 Unmodified _SRSETRDVY_ REV__ENSG00000105281|ENST00000542575|SLC1A5;REV__nc|ENSG00000105281|Q15758-2|SLC1A5;REV__nc|ENSG00000105281|Q15758-3|SLC1A5 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100703.7 NaN 257 907 1164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1168 18.977 NaN 29165 35 0 3677.3 0.327 -1 NAESGRGQVM 10 23 532.7428612211348 1063.4711695090696 2 532.7431640625 MULTI HCD FTMS 0 0 0 1167 6497.9130859375 0.40387724064222535 -31 0.26551055908203125 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.5288652416199255 0.4513317009562028 2 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.8302 0 0 799.34965712715 0 799.34965712715 0 14.859856381998782 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.8302 + + 5 NaN NaN 97083.3 NaN 258 908 1167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1169 18.982 NaN 43559 35 0 10297 0.261 -1 LCFGSSRQE 9 16 563.2532985175816 1124.492044101963 2 563.2539672851562 MULTI HCD FTMS 0 0 0 1167 4939.6630859375 0.4488467356484073 -7 0.06276130676269531 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))FGSSRQE_ ENST00000530517.5_1_11:125105009-125201775:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107436.5 NaN 259 908 1167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1172 18.995 NaN 24441 35 0 5500.2 0.411 + 1946 DAHARCPGSGD 11 27 543.2241165125425 NaN 0 543.2239990234375 PEAK HCD FTMS 0 0 0 1171 3771.126953125 0.7481835889498194 13 -0.10936164855957031 1 Unmodified _DAHARCPGSGD_ ENST00000433972.1_1_3:9885183-9885729:-|nuORF 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94138.1 NaN 260 910 1171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1174 19.003 NaN 28933 35 0 11940 0.411 + 12223 KKWQTDNSY 9 15 585.282658174076 1168.550763414952 2 585.2830810546875 MULTI HCD FTMS 0 0 0 1173 7521.439453125 0.4054615181976554 -1 0.007993698120117188 1 Unmodified _KKWQTDNSY_ ENST00000455810.5_1_10:6622785-6624154:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102865 NaN 261 911 1173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1176 19.011 NaN 22375 35 0 4391 0.411 + 35936 YYTSKGLKP 9 19 528.7899839714122 NaN 0 528.7905883789062 PEAK HCD FTMS 0 0 0 1175 3705.549072265625 0.6138290615974562 7 -0.05719947814941406 1 Unmodified _YYTSKGLKP_ REV__ENST00000367926.8_1_1:162535868-162535952:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88325.9 NaN 262 912 1175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1178 19.019 NaN 27223 35 0 6057.5 0.411 + -1 VSSARAKAMR 10 19 546.8006888775469 NaN 0 546.8009643554688 PEAK HCD FTMS 0 0 0 1177 3757.244873046875 0.47960160501334187 -3 0.024076461791992188 1 Oxidation (M) _VSSARAKAM(Oxidation (M))R_ REV__ENSG00000143971|ENST00000272342|ETAA1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101106.5 NaN 263 913 1177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1180 19.027 NaN 43054 35 0 4403.4 0.411 -1 HQWPMTAM 8 41 509.21849537291985 1016.4224378126397 2 509.21917724609375 MULTI HCD FTMS 0 0 0 1179 6022.84130859375 0.298515536832274 14 -0.11829757690429688 1 Oxidation (M) _HQWPMTAM(Oxidation (M))_ OR5B12|p.F111Sfs*24|1|0.21|ENSG00000172362|chr11:58439820-58439820|A/-|frameshift_variant 11.640296217721598 0.50814828952472 2 TA{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.4873 0 0 679.2935658185562 0 679.2935658185562 0 35.44531259372398 0 0 0 0.5 0 0.4247425010840047 0 TA{M(Oxidation (M))|F} 3.4873 + + 4 NaN NaN 113731 NaN 264 914 1179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1182 19.035 NaN 27092 35 0 3585.5 0.327 -1 0 19 526.2453294958646 1050.476106058529 2 526.2453002929688 MULTI HCD FTMS 0 0 0 1181 18954.48828125 0.617649935925974 -9 0.07506370544433594 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89287.8 NaN 265 915 1181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1183 19.04 NaN 39543 35 0 9867.3 0.261 -1 HQWPMTAM 8 19 509.21849537291985 1016.4224378126397 2 509.2171936035156 MULTI HCD FTMS 0 0 0 1181 8559.05078125 0.4242199831986105 15 -0.12780380249023438 2 Oxidation (M) _HQWPMTAM(Oxidation (M))_ OR5B12|p.F111Sfs*24|1|0.21|ENSG00000172362|chr11:58439820-58439820|A/-|frameshift_variant 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100109.7 NaN 266 915 1181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1186 19.053 NaN 55795 35 0 6916.2 0.411 + 2205 DILYAMYV 8 33 494.24608104444025 986.4776091556805 2 494.2461242675781 MULTI HCD FTMS 0 0 0 1185 17526.57421875 0.8202133050398809 -4 0.03360176086425781 1 Unmodified _DILYAMYV_ ENSG00000171488|ENST00000370454|LRRC8C 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 105344.9 NaN 267 917 1185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1190 19.076 NaN 27099 35 0 6970.7 0.411 -1 KEMFRCLW 8 29 585.282658174076 1168.550763414952 2 585.2830200195312 MULTI HCD FTMS 0 0 0 1189 6572.5185546875 0.3543076253121525 8 -0.06987571716308594 1 Carbamidomethyl (C) _KEMFRC(Carbamidomethyl (C))LW_ nc|ENSG00000205863|B2RNN3-2|C1QTNF9B 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94754.4 NaN 268 920 1189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1193 19.091 NaN 114880 35 0 32785 0.327 + 21741 QAEEREHTL 9 33 556.76991628662 1111.5252796400398 2 556.7701416015625 MULTI HCD FTMS 0 0 0 1192 52867.88671875 0.880911332181451 -3 0.0229034423828125 1 Unmodified _QAEEREHTL_ ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP 8.745405648335112 0.2847203663274469 2 K{I|L} 2 8 19.949 0 0 1.7947 0 0 852.3361683576187 0 852.3361683576187 0 14.463950151760656 0 0 0 0 0 0 0.5 K{I|L} 1.7947 - 24 NaN NaN 94639.8 NaN 269 922 1192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1194 19.096 NaN 42657 35 0 6118.8 0.261 -1 SLLWMCCR 8 26 563.2532985175816 1124.492044101963 2 563.2522583007812 MULTI HCD FTMS 0 0 0 1192 7402.61767578125 0.6726452232110096 7 -0.061893463134765625 2 2 Carbamidomethyl (C) _SLLWMC(Carbamidomethyl (C))C(Carbamidomethyl (C))R_ ENST00000530452.6_1_11:721575-723241:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106541.8 NaN 270 922 1192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1195 19.099 NaN 22819 35 0 3520.9 0.261 + 32686 WPISCRKIRV 10 28 629.3655690493233 NaN 0 629.3501586914062 PEAK HCD FTMS 0 0 0 1192 3465.0673828125 0.8182702795072846 -1 0.0075588226318359375 3 Unmodified _WPISCRKIRV_ ENST00000267101.7_1_12:56473655-56474027:+|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87131.9 NaN 271 922 1192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1197 19.105 NaN 30870 35 0 4676.8 0.327 + 19264 NLLRRMWV 8 23 544.3146792684275 NaN 0 544.3145141601562 PEAK HCD FTMS 0 0 0 1196 4374.6015625 0.9274694259186718 1 -0.0075969696044921875 1 Unmodified _NLLRRMWV_ ENSG00000140545|ENST00000268150|MFGE8;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;ENST00000559997.5_1_15:89448698-89456595:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8 0.6903765706972694 0.38822285293237185 2 C 1 8 2.7642 0 0 0.25439 0 0 825.652355507755 154.93403040103752 980.5863859087925 0 0 0 0 0 0 0 0 0 C 0.25439 - 1 + NaN NaN 93147.3 NaN 272 923 1196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1199 19.112 NaN 45410 35 0 5688.6 0.411 -1 HPESERISM 9 29 551.2531233075852 1100.4916936819702 2 551.2533569335938 MULTI HCD FTMS 0 0 0 1198 4031.285400390625 0.07782480542084223 -45 0.3844261169433594 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3092135065061 734.3092135065061 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 4 + NaN NaN 95032 NaN 273 924 1198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1202 19.127 NaN 22770 35 0 3505.1 0.327 + 28546 TPQSASGLHP 10 22 497.7511922111396 993.4878314890792 2 497.752197265625 MULTI HCD FTMS 0 0 0 1201 1323.25341796875 0.08709709578966571 17 -0.16010284423828125 1 Unmodified _TPQSASGLHP_ REV__NLRP1|p.P108A|1|0.2|ENSG00000091592|chr17:5582796-5582796|G/C|missense_variant 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89022.9 NaN 274 926 1201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1203 19.132 NaN 20994 35 0 4092.1 0.261 + 26277 SRDQEKPYF 9 17 585.282658174076 1168.550763414952 2 585.2830810546875 MULTI HCD FTMS 0 0 0 1201 5802.71240234375 0.3128093491919465 14 -0.13117218017578125 2 Unmodified _SRDQEKPYF_ ENSG00000136243|ENST00000258742|NUP42;ENST00000487595.1_7:23221671-23236000:+|nuORF;ENST00000497500.1_7:23221671-23226770:+|nuORF;nc|ENSG00000136243|O15504-2|NUP42 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100532.9 NaN 275 926 1201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1205 19.137 NaN 33888 35 0 5752.1 0.411 + 31155 VTYEMDHG 8 20 476.1982328024408 NaN 0 476.19818115234375 PEAK HCD FTMS 0 0 0 1204 8841.908203125 0.6105674172851389 121 -1.0563411712646484 1 Unmodified _VTYEMDHG_ ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96419 NaN 276 927 1204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1208 19.153 NaN 48278 35 0 5763.6 0.327 -1 QALRDNSTM 9 26 526.2453294958646 1050.476106058529 2 526.2453002929688 MULTI HCD FTMS 0 0 0 1207 23322.88671875 0.7599983325160329 5 -0.04101371765136719 1 Oxidation (M) _QALRDNSTM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000183199|Q58FF7|HSP90AB3P 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4741 0 0 885.4304192682931 0 885.4304192682931 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4741 + + 8 + NaN NaN 104644.6 NaN 277 929 1207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1209 19.157 NaN 36236 35 0 11795 0.261 -1 PCPLLCRH 8 21 498.24904014444763 994.4835273556953 2 498.2500305175781 MULTI HCD FTMS 0 0 0 1207 6176.9150390625 0.415799984065241 -5 0.04107475280761719 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))PLLCRH_ ENST00000524965.5_1_8:145540219-145541001:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90599.4 NaN 278 929 1207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1211 19.163 NaN 15772 35 0 3794.5 0.411 + 111 ADNLSFAIRVP 11 19 601.8283556353288 NaN 0 601.8282470703125 PEAK HCD FTMS 0 0 0 1210 5507.34326171875 1 0 0 1 Unmodified _ADNLSFAIRVP_ REV__ENSG00000156265|ENST00000399928|MAP3K7CL 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91157 NaN 279 930 1210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1213 19.171 NaN 724700 35 0 71361 0.411 + 7855 FYSSVNKNSVL 11 100 419.8884031998441 NaN 0 419.9017333984375 PEAK HCD FTMS 0 0 0 1212 30196.26953125 0.7135157192776607 212 -1.8717899322509766 1 Unmodified _FYSSVNKNSVL_ ENSG00000123388|ENST00000546378|HOXC11 9.38312468134398 0.31550292094573573 2 EEK 3 10 13.244 0 0 1.5809 0 0 65.31811391746324 383.2409766259371 448.5590905434003 0 0 0 0 0 0 0 0.8807196863200843 0 EEK 1.5809 - 57 + NaN NaN 301393.6 NaN 280 931 1212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1217 19.194 NaN 38628 35 0 5584.6 0.327 + -1 ICPLPHCR 8 25 498.24904014444763 994.4835273556953 2 498.248779296875 MULTI HCD FTMS 0 0 0 1216 14855.49609375 1 0 0 1 Carbamidomethyl (C) _IC(Carbamidomethyl (C))PLPHCR_ REV__ENSG00000168754|ENST00000490605|FAM178B 2.8892196856762586 0.5377058178582064 2 P 1 -1 3.0989 0 0 0.31161 0 0 414.176777943389 480.2298678033813 894.4066457467703 0 0 0 0 0 0 0 0 0 P 0.31161 + + 1 + NaN NaN 95221.6 NaN 281 934 1216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1218 19.198 NaN 19795 35 0 4228.2 0.261 + 419 AKRQSRETL 9 12 544.8145071939585 NaN 0 544.80126953125 PEAK HCD FTMS 0 0 0 1216 1273.3358154296875 0.2974382962998025 -6 0.04856681823730469 2 Unmodified _AKRQSRETL_ REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant;REV__ENSG00000164742|ENST00000297323|ADCY1 1.4819007175156935 0.28806575819904134 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80746.8 NaN 282 934 1216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1219 19.202 NaN 27947 35 0 5328.5 0.261 -1 CKLCNFAF 8 18 530.2424021734581 NaN 0 530.2423095703125 PEAK HCD FTMS 0 0 0 1216 6365.36865234375 0.6103662785269751 -7 0.05659675598144531 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))KLC(Carbamidomethyl (C))NFAF_ ENSG00000010818|ENST00000367603|HIVEP2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91504 NaN 283 934 1216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1220 19.205 NaN 18773 35 0 4567.7 0.261 + 8758 HHQNVLFHH 9 12 584.789408150191 NaN 0 584.7886352539062 PEAK HCD FTMS 0 0 0 1216 4924.95263671875 0.522428855521528 -24 0.19904708862304688 4 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100727.7 NaN 284 934 1216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1222 19.211 NaN 22031 35 0 6417.3 0.326 + 22516 QRTVLNLYH 9 14 572.3169813476592 1142.6194097621183 2 572.3170166015625 MULTI HCD FTMS 0 0 0 1221 4116.70947265625 0.45211434115344584 4 -0.040569305419921875 1 Unmodified _QRTVLNLYH_ REV__ENSG00000131096|ENST00000692052|PYY;REV__nc|ENSG00000131096|P10082-2|PYY 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93163.7 NaN 285 935 1221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1224 19.218 NaN 316810 35 0 39849 0.327 + 29732 VDNREEKVRL 10 66 629.3491469863112 1256.6837410394223 2 629.3493041992188 MULTI HCD FTMS 0 0 0 1223 201621.375 0.8459603911129293 -3 0.03161048889160156 1 Unmodified _VDNREEKVRL_ ENSG00000188897|ENST00000696174|unknown 63.227496030279354 0.029684053017782965 2 DN[DN]K[RV]{I|L} 8 4 41.635 0 0 3.3131 0 0 284.1944752423844 0 284.1944752423844 0 26.48448453280515 0 0 0 1 0 1.1747425010840047 1.1549471895720984 DN[DN]K[RV]{I|L} 3.3131 - 218 NaN NaN 132359.2 NaN 286 936 1223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1225 19.223 NaN 107570 35 0 11105 0.264 -1 FRKQDCRDW 9 38 437.53886742061513 NaN 0 437.538818359375 PEAK HCD FTMS 0 0 0 1223 33250.00390625 0.7646212690807209 -2 0.024152755737304688 2 Carbamidomethyl (C) _FRKQDC(Carbamidomethyl (C))RDW_ ENST00000438320.6_2_4:183836134-183836680:-|nuORF 0.26902006276349055 0.29394320858957723 2 E 1 -1 5.401 0 0 0.61863 0 0 401.161461792599 339.84711633853755 741.0085781311366 0 0 0 0 0 0 0 0.3807196863200844 0 E 0.61863 - 5 + NaN NaN 96916.3 NaN 287 936 1223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1226 19.226 NaN 27572 35 0 4657.6 0.261 + 34024 YMPALARFR 9 15 562.8071251392217 NaN 0 563.25341796875 PEAK HCD FTMS 0 0 0 1223 4823.5322265625 0.67320715535696 27 -0.2521190643310547 3 Unmodified _YMPALARFR_ REV__ENSG00000124209|ENST00000244040|RAB22A;REV__RAB22A|p.I140Mfs*5|1|0.36|ENSG00000124209|chr20:58354195-58354198|TATT/-|frameshift_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109284.2 NaN 288 936 1223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1227 19.229 NaN 80342 35 0 10551 0.264 -1 0 35 400.3501892089844 NaN 0 400.3501892089844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88992.2 NaN 289 936 1223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1229 19.235 NaN 35341 35 0 5193.7 0.411 + 21742 QAEEREHTL 9 35 556.76991628662 1111.5252796400398 2 556.770263671875 MULTI HCD FTMS 0 0 0 1228 13381.26953125 0.22296544652449474 12 -0.10785865783691406 1 Unmodified _QAEEREHTL_ ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP 1.6526216038709556 0.33848895094777925 2 {M(Oxidation (M))|F} 1 9 1.9897 0 0 0.17901 0 0 472.4650512238273 488.96125208072505 961.4263033045523 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.17901 - 2 + NaN NaN 89388.2 NaN 290 937 1228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1231 19.243 NaN 59912 35 0 5672.7 0.411 -1 HPESERISM 9 37 551.2531233075852 1100.4916936819702 2 551.25341796875 MULTI HCD FTMS 0 0 0 1230 15909.2978515625 0.3071323130731705 -31 0.2755584716796875 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 9.38312468134398 0.279288223203164 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3151252534076 734.3151252534076 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 10 + NaN NaN 110294.5 NaN 291 938 1230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1234 19.259 NaN 17957 35 0 5975.6 0.326 + 8759 HHQNVLFHH 9 10 584.789408150191 NaN 0 584.7902221679688 PEAK HCD FTMS 0 0 0 1233 4234.984375 0.44923844011967334 -18 0.16757965087890625 1 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91235 NaN 292 940 1233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1235 19.263 NaN 29941 35 0 6752.5 0.261 + -1 FFFIRMIR 8 19 573.3174599411698 1144.6203669491395 2 573.3176879882812 MULTI HCD FTMS 0 0 0 1233 7609.9267578125 0.4844242958220377 -3 0.023809432983398438 2 Oxidation (M) _FFFIRM(Oxidation (M))IR_ REV__ENST00000494547.5_1_6:42045452-42045596:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86632.2 NaN 293 940 1233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1236 19.267 NaN 13006 35 0 4723.2 0.261 + 32623 WLQWKWHPV 9 11 640.3401643223165 1278.6657757114328 2 640.8416748046875 MULTI HCD FTMS 0 0 0 1233 3899.34423828125 0.4377890893286642 3 -0.0289306640625 3 Unmodified _WLQWKWHPV_ ENST00000490247.1_1_15:39881220-39881283:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91776.2 NaN 294 940 1233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1239 19.28 NaN 43035 35 0 4975.1 0.411 -1 QALRDNSTM 9 39 526.2453294958646 1050.476106058529 2 526.2450561523438 MULTI HCD FTMS 0 0 0 1238 20384.26171875 0.6642404562796205 18 -0.16513824462890625 1 Oxidation (M) _QALRDNSTM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000183199|Q58FF7|HSP90AB3P 6.723162845929126 0.3000504726104499 2 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WR]{M(Oxidation (M))|F} 7 -1 16.087 0 0 1.5314 0 0 53.04867442873417 0 53.04867442873417 0 16.086900738869474 0 0 0 0 0 0 0.4247425010840047 ET{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WR]{M(Oxidation (M))|F} 1.5314 - 9 + NaN NaN 94557.1 NaN 295 942 1238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1241 19.288 NaN 29871 35 0 5662 0.412 + 30919 VRGQLLQRR 9 25 563.3529052734375 NaN 0 563.3529052734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VRGQLLQRR_ REV__ENSG00000169231|ENST00000368378|THBS3;REV__ENST00000498500.1_1_1:155165634-155166210:-|nuORF;REV__nc|ENSG00000169231|P49746-2|THBS3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99703 NaN 296 943 1240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1243 19.296 NaN 1294700 35 0 140180 0.327 + 21763 QAEREEKRVL 10 94 419.90161711164717 1256.6830219351416 3 419.90185546875 MULTI HCD FTMS 0 0 0 1242 754728.8125 0.8115112704849178 5 -0.04700279235839844 1 Unmodified _QAEREEKRVL_ ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB;nc|ENSG00000125835|P14678|SNRPB 128.5786326129116 2.249882698014817E-05 2 QAEREEKRV{I|L} 10 0 + 70.36 0 0 5.5989 5.5989 89.379 0 0 0 9.164539485499262 12.214436601033647 9.164539485499262 12.214436601033647 0 2.1747425010840047 0 0.8494850021680094 0 + + QAEREEKRV{I|L};[QA]EREEKRV{I|L};QAEREEK[{I|L}V]R 5.5989;4.6269;4.2028 +;+;- + 410 + NaN NaN 296098.8 NaN 297 944 1242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1244 19.3 NaN 50319 35 0 5443.5 0.261 -1 RPEPEGEAM 9 25 516.2268716238372 1030.4391903144742 2 516.2267456054688 MULTI HCD FTMS 0 0 0 1242 26665.58984375 0.8184735419541981 -5 0.04461097717285156 2 Oxidation (M) _RPEPEGEAM(Oxidation (M))_ ENSG00000124422|ENST00000261497|USP22 21.536976647645854 0.1742816388551942 2 A{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.9324 0 0 794.3547486341956 0 794.3547486341956 0 10.51152522447381 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.9324 + + 8 NaN NaN 95554.3 NaN 298 944 1242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1245 19.304 NaN 33478 35 0 11840 0.261 + 8011 GFSTGITSRGV 11 21 541.2853376962368 1080.5561224592734 2 541.2852783203125 MULTI HCD FTMS 0 0 0 1242 5631.82861328125 0.17162413664048842 -13 0.12474822998046875 3 Unmodified _GFSTGITSRGV_ REV__ENSG00000185480|ENST00000327680|PARPBP;REV__nc|ENSG00000185480|Q9NWS1-2|PARPBP;REV__nc|ENSG00000185480|Q9NWS1-5|PARPBP 1.1933415558491238 0.4136870758253112 2 S 1 -1 6.9897 0 0 0.64686 0 0 330.1896196289984 660.3067110650999 990.4963306940983 0 0 0 0 0 0 0 0 0 S 0.64686 + + 1 + NaN NaN 92606.2 NaN 299 944 1242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1247 19.309 NaN 25434 35 0 5419.9 0.411 + 3696 ELRQGGRKY 9 28 553.8071282469042 NaN 0 553.8071899414062 PEAK HCD FTMS 0 0 0 1246 9114.45703125 1 0 0 1 Unmodified _ELRQGGRKY_ REV__ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;REV__ENSG00000198925|ENST00000361242|ATG9A;REV__nc|ENSG00000198925|Q7Z3C6-2|ATG9A;REV__nc|ENSG00000198925|Q7Z3C6-3|ATG9A 1.4819007175156935 0.28806575819904134 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105111.2 NaN 300 945 1246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1249 19.317 NaN 135260 35 0 9103 0.327 -1 0 47 442.77520846239605 883.5358639915921 2 442.7751159667969 MULTI HCD FTMS 0 0 0 1248 118367.1484375 0.2179752388333799 -12 0.12316322326660156 1 NaN NaN 2 {[VA]|[{I|L}G]}AAVA{[QV]|[N{I|L}]|[RA]|[KV]}R 9 -1 {[VA]|[{I|L}G]} + + 65.781 23.724 13.946 7.4452 7.4452 66.453 0 0 0 0 32.805168975722765 0 0 0 2.447621246364342 0 0 2.0114393726401687 {[VA]|[{I|L}G]}AAVA{[QV]|[N{I|L}]|[RA]|[KV]}R 7.4452 - 155 + NaN NaN 105054.1 NaN 301 946 1248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1250 19.322 NaN 34770 35 0 11520 0.261 + -1 QLPAIVVLLI 10 20 560.871453719268 NaN 0 560.8713989257812 PEAK HCD FTMS 0 0 0 1248 10950.17578125 0.6059536716167292 47 -0.40053558349609375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QLPAIVVLLI_ REV__ENST00000370713.5_1_1:82432165-82432204:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87976 NaN 302 946 1248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1252 19.327 NaN 25820 35 0 4689.2 0.411 + 14775 LIEAEASSLR 10 26 544.8011207820057 1087.5876886308113 2 544.8013305664062 MULTI HCD FTMS 0 0 0 1251 9444.171875 0.4168984629625127 10 -0.09156990051269531 1 Unmodified _LIEAEASSLR_ ENST00000562945.2_1_16:34428410-34428635:-|nuORF 2.735195868890462 0.4608258780945842 2 AD 2 9 7.9588 0 0 0.73178 0 0 355.2117013473274 543.2891939752561 898.5008953225836 0 0 0 0 0 0 0 0 0 AD 0.73178 - 4 + NaN NaN 85879.2 NaN 303 947 1251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1255 19.343 NaN 160170 35 0 19458 0.411 + 21764 QAEREEKRVL 10 67 629.3491469863112 1256.6837410394223 2 629.3493041992188 MULTI HCD FTMS 0 0 0 1254 107392.1015625 0.4505944086545979 10 -0.09397315979003906 1 Unmodified _QAEREEKRVL_ ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB;nc|ENSG00000125835|P14678|SNRPB 75.5705956163825 0.010984675281887875 2 EKRV{I|L} 5 5 60.049 0 0 4.7784 0 0 613.2802601544937 0 613.2802601544937 0 47.51348757971677 0 0 0 1.305462187404089 0 1.305462187404089 0.7742275032520141 + EKRV{I|L} 4.7784 + + 103 NaN NaN 133600.7 NaN 304 949 1254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1257 19.351 NaN 44292 35 0 5002.6 0.411 -1 NAESGRGQVM 10 42 532.7429175728541 1063.4712822125082 2 533.2445678710938 MULTI HCD FTMS 0 0 0 1256 6245.2685546875 0.5971164131232082 1 -0.008031845092773438 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 9.5439744041441 0.42184090036563754 2 E{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.1589 0 0 769.3758059935614 0 769.3758059935614 0 7.501225267834 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 2.1589 - 8 + NaN NaN 104099 NaN 305 950 1256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1260 19.366 NaN 88248 35 0 9065.3 0.327 -1 HPESERISM 9 29 551.2531233075852 1100.4916936819702 2 551.2533569335938 MULTI HCD FTMS 0 0 0 1259 30645.568359375 0.5916190886282519 -17 0.15582275390625 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3155611627561 734.3155611627561 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 102883.3 NaN 306 952 1259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1261 19.371 NaN 24414 35 0 4558.2 0.261 -1 FLVWRRCRRRE 11 16 545.3021406488447 NaN 0 545.3020629882812 PEAK HCD FTMS 0 0 0 1259 2052.02294921875 0.31861323652543255 1 -0.013223648071289062 2 Carbamidomethyl (C) _FLVWRRC(Carbamidomethyl (C))RRRE_ ENSG00000006327|ENST00000326577|TNFRSF12A;ENST00000575124.1_1_16:3070552-3071824:+|nuORF;nc|ENSG00000006327|Q9NP84-2|TNFRSF12A 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82165.5 NaN 307 952 1259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1262 19.374 NaN 16007 35 0 3299.4 0.261 -1 FCSCWGQCSI 10 15 624.2361727227084 NaN 0 624.2361450195312 PEAK HCD FTMS 0 0 0 1259 5317.7001953125 0.5849257779397641 40 -0.3433513641357422 3 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SCWGQC(Carbamidomethyl (C))SI_ L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|77|1|anti-sense 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83065.4 NaN 308 952 1259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1264 19.38 NaN 71741 35 0 14298 0.411 -1 0 45 400.3500404138607 NaN 0 400.3499450683594 PEAK HCD FTMS 0 0 0 1263 1261.4171142578125 0.8061330847994082 -1 0.013223648071289062 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110169.7 NaN 309 953 1263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1266 19.388 NaN 32565 35 0 6988.2 0.327 -1 MKTTLIFLY 9 26 573.3174599411698 1144.6203669491395 2 573.3173828125 MULTI HCD FTMS 0 0 0 1265 4398.1943359375 0.27997538765897984 11 -0.09993171691894531 1 Oxidation (M) _M(Oxidation (M))KTTLIFLY_ Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|87|1|anti-sense 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94630.4 NaN 310 954 1265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1267 19.392 NaN 37538 35 0 10582 0.261 + 34842 YRPFGMVR 8 26 513.2720099325815 NaN 0 513.2720336914062 PEAK HCD FTMS 0 0 0 1265 1656.6741943359375 0.3642173720050604 3 -0.03094482421875 2 Unmodified _YRPFGMVR_ REV__ENST00000366962.7_1_1:213189068-213189146:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97932.6 NaN 311 954 1265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1269 19.398 NaN 37903 35 0 5852 0.327 -1 PLCHCLDH 8 20 526.2270898970762 NaN 0 526.24560546875 PEAK HCD FTMS 0 0 0 1268 4963.54541015625 0.8379684665691474 -5 0.04706001281738281 1 2 Carbamidomethyl (C) _PLC(Carbamidomethyl (C))HC(Carbamidomethyl (C))LDH_ ENST00000539896.1_1_1:28503125-28520284:-|nuORF 0.7936320650641473 0.38822285293237185 2 Q 1 -1 5.4846 0 0 0.52212 0 0 619.5783730541149 299.77378259830317 919.3521556524181 0 0 0 0 0 0 0 0 0 Q 0.52212 - 1 + NaN NaN 85805.5 NaN 312 955 1268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1270 19.402 NaN 19289 35 0 4992.4 0.261 -1 NTRPMKRCF 9 14 584.789408150191 NaN 0 584.7890625 PEAK HCD FTMS 0 0 0 1268 5681.1279296875 0.6026423767509465 -3 0.03141593933105469 2 Oxidation (M) _NTRPM(Oxidation (M))KRCF_ ENSG00000102710|ENST00000350612|SUPT20H;ENST00000490602.5_1_13:37598533-37607608:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96496.9 NaN 313 955 1268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1271 19.406 NaN 18622 35 0 5737.4 0.261 + -1 PMLRILTAFC 10 15 590.814532440215 NaN 0 590.8143310546875 PEAK HCD FTMS 0 0 0 1268 1899.88916015625 0.5038574955246888 1 -0.013246536254882812 3 Oxidation (M) _PM(Oxidation (M))LRILTAFC_ REV__ENSG00000095564|ENST00000265990|BTAF1;REV__nc|ENSG00000095564|O14981-2|BTAF1 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85883.6 NaN 314 955 1268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1274 19.419 NaN 27564 35 0 4718.2 0.327 -1 MMEMKIIIS 9 22 585.2831576622392 NaN 0 585.282958984375 PEAK HCD FTMS 0 0 0 1273 5672.60205078125 0.5912276141191242 8 -0.06898689270019531 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))MEM(Oxidation (M))KIIIS_ ENST00000355832.9_2_10:50732082-50732115:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90150.6 NaN 315 957 1273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1275 19.423 NaN 30416 35 0 11506 0.261 + -1 VPYCWFVH 8 18 554.2585834837948 NaN 0 554.2587890625 PEAK HCD FTMS 0 0 0 1273 7563.81103515625 1 0 0 2 Carbamidomethyl (C) _VPYC(Carbamidomethyl (C))WFVH_ REV__ENSG00000214285|ENST00000398023|NPS 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97961.5 NaN 316 957 1273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1277 19.429 NaN 56417 35 0 6616.1 0.411 + 745 ARTAYTSAQL 10 38 541.2853376962368 1080.5561224592734 2 541.2854614257812 MULTI HCD FTMS 0 0 0 1276 31492.041015625 0.9596872919050917 1 -0.007997512817382812 1 Unmodified _ARTAYTSAQL_ ENSG00000105997|ENST00000612286|HOXA3;ENSG00000120093|ENST00000498678|HOXB3;nc|ENSG00000120093|P14651-2|HOXB3;nc|ENSG00000120093|P14651-3|HOXB3 8.155526934196011 0.43213520406898465 2 {M(Oxidation (M))|F}SK[PS] 5 9 27.218 0 0 2.5189 0 0 516.2660389630875 0 516.2660389630875 0 16.760912590556813 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}SK[PS] 2.5189 - 11 NaN NaN 113530.5 NaN 317 958 1276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1279 19.437 NaN 463940 35 0 30069 0.411 -1 0 89 442.77520846239605 883.5358639915921 2 442.7752380371094 MULTI HCD FTMS 0 0 0 1278 480216.53125 0.8843274039521739 1 -0.008050918579101562 1 NaN NaN 2 AVAAVAAR 8 -1 99.499 0 0 11.261 0 0 0 171.08869348697502 171.08869348697502 76.47853193484117 0 0 0 0 2.9604093769761874 1.6989700043360187 0 2.1861818737241734 AVAAVAAR 11.261 - 1365 + NaN NaN 219158.2 NaN 318 959 1278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1281 19.445 NaN 35138 35 0 4716.7 0.327 + 32467 WEDPVEWV 8 20 530.2424021734581 NaN 0 530.2421264648438 PEAK HCD FTMS 0 0 0 1280 7303.740234375 0.7003454143291089 19 -0.15839576721191406 1 Unmodified _WEDPVEWV_ ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113120.8 NaN 319 960 1280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1282 19.449 NaN 36899 35 0 11303 0.261 + -1 VSSARAKAMR 10 11 546.8007465524588 NaN 0 546.801025390625 PEAK HCD FTMS 0 0 0 1280 1934.032958984375 0.25615217338443486 18 -0.15040016174316406 2 Oxidation (M) _VSSARAKAM(Oxidation (M))R_ REV__ENSG00000143971|ENST00000272342|ETAA1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92272.1 NaN 320 960 1280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1285 19.462 NaN 32334 35 0 3462.1 0.411 + 29733 VDNREEKVRL 10 33 629.3491469863112 1256.6837410394223 2 629.3493041992188 MULTI HCD FTMS 0 0 0 1284 13867.75 0.05818612839961202 23 -0.18808937072753906 1 Unmodified _VDNREEKVRL_ ENSG00000188897|ENST00000696174|unknown 6.2057823575117 0.44245551207394906 2 {M(Oxidation (M))|F} 1 10 2.2185 0 0 0.17654 0 0 645.3645404552411 461.2501314752563 1106.6146719304975 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.17654 - 1 + NaN NaN 112132.5 NaN 321 962 1284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1288 19.478 NaN 19033 35 0 5946.7 0.327 + -1 AWLVYMFY 8 12 554.760986328125 NaN 0 554.760986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _AWLVYM(Oxidation (M))FY_ REV__ENSG00000171365|ENST00000376091|CLCN5;REV__nc|ENSG00000171365|P51795-1|CLCN5 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81491.6 NaN 322 964 1287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1289 19.482 NaN 11306 35 0 3309.5 0.261 + -1 KLLSGVYECY 10 12 616.3062133789062 NaN 0 616.3062133789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _KLLSGVYEC(Carbamidomethyl (C))Y_ REV__ENSG00000253251|ENST00000510585|SHLD3 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96171.1 NaN 323 964 1287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1291 19.488 NaN 118470 35 0 14980 0.411 -1 HPESERISM 9 40 551.2531233075852 1100.4916936819702 2 551.25341796875 MULTI HCD FTMS 0 0 0 1290 46097.61328125 0.8899240385289733 -4 0.03304481506347656 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 13.042465956692817 0.2476723265019929 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3137665500248 734.3137665500248 24.20818753952375 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 18 + NaN NaN 119363.2 NaN 324 965 1290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1294 19.503 NaN 27542 35 0 4779.1 0.411 + 25630 SGQERYWT 8 23 513.7354934308073 1025.4564339284145 2 513.73583984375 MULTI HCD FTMS 0 0 0 1293 3851.23291015625 0.3406547107707152 1 -0.007978439331054688 1 Unmodified _SGQERYWT_ ENST00000471919.1_1_6:116981518-116989864:-|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94227.1 NaN 325 967 1293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1297 19.519 NaN 29395 35 0 4945.5 0.411 -1 NRKKEDDM 8 33 526.2453294958646 1050.476106058529 2 526.2454833984375 MULTI HCD FTMS 0 0 0 1296 14841.375 0.4836202477104713 45 -0.3722801208496094 1 Oxidation (M) _NRKKEDDM(Oxidation (M))_ PPME1|p.K270N|1|0.1|ENSG00000214517|chr11:74239232-74239232|G/C|missense_variant 4.3292370932331545 0.5355693454741696 2 E 1 -1 3.0989 0 0 0.295 0 0 53.047093596352234 865.3816012018186 918.4286947981709 0 0 0 0 0 0 0 0 0 E 0.295 + + 2 + NaN NaN 88246.4 NaN 326 969 1296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1299 19.531 NaN 16571 35 0 4422.7 0.411 + -1 QCCRLLYR 8 21 584.789408150191 NaN 0 584.789306640625 PEAK HCD FTMS 0 0 0 1298 5534.3681640625 0.5870744023870024 12 -0.09983634948730469 1 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))C(Carbamidomethyl (C))RLLYR_ REV__ENSG00000232859|ENST00000379102|LYRM9 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95213.3 NaN 327 970 1298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1303 19.554 NaN 26494 35 0 3794.9 0.411 + 746 ARTAYTSAQL 10 25 541.2853376962368 1080.5561224592734 2 541.2854614257812 MULTI HCD FTMS 0 0 0 1302 10540.552734375 0.32121241375928 16 -0.1332225799560547 1 Unmodified _ARTAYTSAQL_ ENSG00000105997|ENST00000612286|HOXA3;ENSG00000120093|ENST00000498678|HOXB3;nc|ENSG00000120093|P14651-2|HOXB3;nc|ENSG00000120093|P14651-3|HOXB3 2.498486711656943 0.462078817294651 2 S 1 9 6.9897 0 0 0.64686 0 0 330.18919238290465 660.3152559869749 990.5044483698796 0 0 0 0 0 0 0 0 0 + S 0.64686 + + 1 + NaN NaN 105424 NaN 328 973 1302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1305 19.562 NaN 88927 35 0 7901 0.411 -1 0 55 442.77520846239605 883.5358639915921 2 442.7750549316406 MULTI HCD FTMS 0 0 0 1304 67878.421875 0.12499933820445545 16 -0.1332530975341797 1 NaN NaN 2 {[VA]|[{I|L}G]}AAVA{[QV]|[N{I|L}]|[RA]|[KV]}R 9 -1 {[VA]|[{I|L}G]} + + 50.385 19.208 11.292 5.7026 5.7026 63.434 0 0 0 0 25.190775249321078 0 0 0 1.6747425010840047 0 0 2.110924374808178 {[VA]|[{I|L}G]}AAVA{[QV]|[N{I|L}]|[RA]|[KV]}R 5.7026 - 55 + NaN NaN 126735.5 NaN 329 974 1304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1308 19.577 NaN 86487 35 0 9040.6 0.411 + 17673 MAEGKQHAL 9 55 492.7500947129865 983.485636492773 2 492.7500915527344 MULTI HCD FTMS 0 0 0 1307 39613.97265625 0.6579865560529748 6 -0.049625396728515625 1 Unmodified _MAEGKQHAL_ ENSG00000232119|ENST00000371317|MCTS1;ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1 51.629811660486645 0.02929079705179888 2 MAE 3 6 41.643 0 0 4.2342 0 0 0 649.343615257674 649.343615257674 14.661903266879719 0 0 0 0 0.4247425010840047 1.6989700043360187 0.5 0 + MAE 4.2342 + + 90 + NaN NaN 108994.5 NaN 330 976 1307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1310 19.585 NaN 14704 35 0 4314.4 0.327 + 23680 RQKERDLEAL 10 12 629.3491469863112 1256.6837410394223 2 629.3489990234375 MULTI HCD FTMS 0 0 0 1309 5642.9228515625 0.023676503657054707 38 -0.31368446350097656 1 Unmodified _RQKERDLEAL_ ENSG00000243710|ENST00000372492|CFAP57 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84583.9 NaN 331 977 1309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1311 19.59 NaN 75805 35 0 11143 0.264 + 22540 QSEEQSSYEN 10 28 400.82660247967004 NaN 0 400.35015869140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QSEEQSSYEN_ REV__ENSG00000198722|ENST00000635942|UNC13B;REV__nc|ENSG00000198722|O14795-2|UNC13B;REV__nc|ENSG00000198722|O14795|UNC13B 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97864.8 NaN 332 977 1309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1313 19.595 NaN 31722 35 0 9859.6 0.411 + 14930 LLEKIKKMKV 10 22 615.4037627526803 NaN 0 615.40380859375 PEAK HCD FTMS 0 0 0 1312 5528.62353515625 0.8920270766814442 -6 0.048854827880859375 1 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 1.4819007175156935 0.33891598740166873 2 M 1 -1 3.9794 0 0 0.32385 0 0 668.4263476715731 426.3009432428344 1094.7272909144076 0 0 0 0 0 0 0 0 0 M 0.32385 + + 2 + NaN NaN 98435.5 NaN 333 978 1312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1316 19.611 NaN 110640 35 0 12497 0.411 -1 HPESERISM 9 41 551.2531233075852 1100.4916936819702 2 551.2531127929688 MULTI HCD FTMS 0 0 0 1315 45677.23046875 0.8818084606584735 11 -0.09164237976074219 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 9.38312468134398 0.279288223203164 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3149552390064 734.3149552390064 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 8 + NaN NaN 123354.3 NaN 334 980 1315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1318 19.619 NaN 31397 35 0 8083.4 0.411 + 21965 QELSRAKR 8 21 494.2881022571627 986.5616515811254 2 494.2883605957031 MULTI HCD FTMS 0 0 0 1317 17328.609375 0.8751107296801112 4 -0.03169441223144531 1 Unmodified _QELSRAKR_ REV__ENSG00000072195|ENST00000312358|SPEG;REV__nc|ENSG00000072195|Q15772-1|SPEG;REV__SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 2 V[KG]R 4 -1 14.693 0 0 1.4893 0 0 528.27739150215 0 528.27739150215 0 14.69273760456403 0 0 0 0 0 0 0 V[KG]R 1.4893 - 14 NaN NaN 87972.5 NaN 335 981 1317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1320 19.627 NaN 31724 35 0 5416.8 0.411 + 25757 SLDDNQFRM 9 24 563.2532823841316 NaN 0 563.2535400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SLDDNQFRM_ ENSG00000108509|ENST00000348066|CAMTA2;ENSG00000171735|ENST00000303635|CAMTA1;ENST00000572326.1_1_17:4876509-4881847:-|nuORF;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;ENST00000575192.1_1_17:4877670-4880473:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 1.4819007175156935 0.28806575819904134 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88654.4 NaN 336 982 1319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1322 19.635 NaN 26506 35 0 5161 0.411 -1 HARWQMQH 8 28 555.2553357689122 1108.4961186046244 2 555.2557983398438 MULTI HCD FTMS 0 0 0 1321 4370.08837890625 0.6594378781845902 -1 0.008060455322265625 1 Oxidation (M) _HARWQM(Oxidation (M))QH_ ENST00000475896.5_1_3:100645321-100712292:-|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98278.6 NaN 337 983 1321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1325 19.65 NaN 19456 35 0 3598.6 0.327 -1 HARWQMQH 8 16 555.2553357689122 1108.4961186046244 2 555.2539672851562 MULTI HCD FTMS 0 0 0 1324 6620.43994140625 0.9990115734689372 1 -0.013265609741210938 1 Oxidation (M) _HARWQM(Oxidation (M))QH_ ENST00000475896.5_1_3:100645321-100712292:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 81735.2 NaN 338 985 1324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1326 19.655 NaN 21939 35 0 5195.1 0.261 + -1 PSSAVTCRSS 10 16 526.2452116635275 1050.4758703938548 2 526.245361328125 MULTI HCD FTMS 0 0 0 1324 8303.9560546875 0.6756537967277327 -1 0.007556915283203125 2 Carbamidomethyl (C) _PSSAVTC(Carbamidomethyl (C))RSS_ REV__ENST00000312917.9_2_6:36259324-36262144:+|nuORF 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89495.4 NaN 339 985 1324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1327 19.658 NaN 23046 35 0 4166 0.261 + 35120 YVEHAVVDHT 10 17 585.2828369140625 NaN 0 585.2828369140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YVEHAVVDHT_ REV__ENSG00000147044|ENST00000378163|CASK;REV__nc|ENSG00000147044|O14936-2|CASK;REV__nc|ENSG00000147044|O14936-3|CASK;REV__nc|ENSG00000147044|O14936-4|CASK;REV__nc|ENSG00000147044|O14936-5|CASK;REV__nc|ENSG00000147044|O14936-6|CASK 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92518.9 NaN 340 985 1324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1331 19.679 NaN 47322 35 0 5790.7 0.411 + 3913 EPRDGSPEA 9 27 479.21678294677685 956.4190129603537 2 479.21710205078125 MULTI HCD FTMS 0 0 0 1330 12444.94921875 0.7289750291306788 -1 0.00737762451171875 1 Unmodified _EPRDGSPEA_ ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ 5.731851221503515 0.3075653528928475 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100589.2 NaN 341 988 1330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1333 19.687 NaN 11684 35 0 1568.8 0.411 + 23065 REDLNFWY 8 18 571.7664640487269 1141.5183751642537 2 571.7666015625 MULTI HCD FTMS 0 0 0 1332 7087.81982421875 0.464806085293345 -3 0.023075103759765625 1 Unmodified _REDLNFWY_ REV__tr|U7T3M0|U7T3M0_FUSNUPhosphopantetheineadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaDPE=3SV=1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109387.6 NaN 342 989 1332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1337 19.71 NaN 17109 35 0 2184.6 0.411 + 14360 LEDERKQRAL 10 31 629.3491469863112 1256.6837410394223 2 629.3491821289062 MULTI HCD FTMS 0 0 0 1336 1738.3197021484375 0.0072936196130435225 53 -0.45258522033691406 1 Unmodified _LEDERKQRAL_ ENSG00000133026|ENST00000360416|MYH10;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133392|P35749-3|MYH11;nc|ENSG00000133392|P35749-4|MYH11 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110451.3 NaN 343 992 1336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1339 19.718 NaN 23243 35 0 4852.8 0.411 -1 MTMMIPQLP 9 25 555.2553357689122 1108.4961186046244 2 555.2557983398438 MULTI HCD FTMS 0 0 0 1338 5550.52734375 0.8375638332706065 9 -0.0752410888671875 1 3 Oxidation (M) _M(Oxidation (M))TM(Oxidation (M))M(Oxidation (M))IPQLP_ CON__P02777 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100433.3 NaN 344 993 1338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1342 19.733 NaN 101720 35 0 12110 0.411 -1 HPESERISM 9 43 551.2531233075852 1100.4916936819702 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1341 31243.380859375 0.6031599836207371 26 -0.22151756286621094 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 13.90604991867851 0.24021115267848145 2 HPE 3 -1 35.445 0 0 3.2209 0 0 0 734.3150163045182 734.3150163045182 29.960762528683702 0 0 0 0 0.5 0 0.4247425010840047 0 HPE 3.2209 + + 25 + NaN NaN 114860.8 NaN 345 995 1341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1347 19.764 NaN 30198 35 0 4597.3 0.411 -1 SESAQSKML 9 33 498.7369273240117 995.4593017148234 2 498.73712158203125 MULTI HCD FTMS 0 0 0 1346 14717.2216796875 0.07139186276392057 -13 0.09998512268066406 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 15.248480904072842 0.22861284681709862 2 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6088 0 0 717.327928611525 0 717.327928611525 0 15.484550065040281 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6088 + + 6 NaN NaN 93532.3 NaN 346 999 1346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1349 19.772 NaN 15739 35 0 2783.6 0.411 + -1 RHNGECEDVD 10 21 615.7438038378688 1229.4730547425374 2 615.7435302734375 MULTI HCD FTMS 0 0 0 1348 3355.1689453125 0.4831171603334369 -4 0.030323028564453125 1 Carbamidomethyl (C) _RHNGEC(Carbamidomethyl (C))EDVD_ REV__ENSG00000166147|ENST00000316623|FBN1;REV__ENST00000559133.5_3_15:48703189-48720097:-|nuORF 0 0.4753037046562868 2 M 1 -1 5.4846 0 0 0.44609 0 0 651.09666421695 444.3148592584594 1095.4115234754095 0 0 0 0 0 0 0 0 0 M 0.44609 - 1 + NaN NaN 89509.3 NaN 347 1000 1348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1351 19.78 NaN 50455 35 0 7537.2 0.327 -1 NSSKDVAVM 9 30 483.7316752788944 965.4487976245888 2 483.7315979003906 MULTI HCD FTMS 0 0 0 1350 29424.6484375 0.667098013692995 -6 0.046356201171875 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 29.84058131909904 0.11198220037953927 2 AV{M(Oxidation (M))|F} 3 -1 39.693 0 0 4.1113 0 0 630.2970448224625 0 630.2970448224625 0 24.987737688117235 0 0 0 1.3494850021680094 0 0 0 AV{M(Oxidation (M))|F} 4.1113 + + 22 NaN NaN 91350.2 NaN 348 1001 1350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1352 19.784 NaN 39722 35 0 5279.4 0.261 -1 MTVIKQITD 9 30 532.7863683885345 1063.5581838438688 2 532.7861938476562 MULTI HCD FTMS 0 0 0 1350 16188.9765625 1 0 0 2 Oxidation (M) _M(Oxidation (M))TVIKQITD_ ENSG00000091106|ENST00000402280|NLRC4;nc|ENSG00000091106|Q9NPP4-2|NLRC4;nc|ENSG00000091106|Q9NPP4-3|NLRC4;nc|ENSG00000091106|Q9NPP4-4|NLRC4;NLRC4|p.F931Lfs*6|1|0.35|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 90502.3 NaN 349 1001 1350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1353 19.788 NaN 19336 35 0 2245.8 0.261 + 31127 VTRRRSRSR 9 20 587.3552856445312 NaN 0 587.3552856445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VTRRRSRSR_ ENSG00000167978|ENST00000301740|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89757.1 NaN 350 1001 1350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1357 19.808 NaN 25905 35 0 5918.4 0.411 + 26404 SSYQTRYF 8 27 526.2453879175446 1050.476222901889 2 526.2457885742188 MULTI HCD FTMS 0 0 0 1356 6303.08349609375 0.47384486705548085 -1 0.0072193145751953125 1 Unmodified _SSYQTRYF_ REV__ENSG00000141279|ENST00000322157|NPEPPS;REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF;REV__ENST00000531486.1_1_17:45681241-45696545:+|nuORF;REV__nc|ENSG00000141279|P55786-2|NPEPPS 0.6903765706972694 0.5409681170271811 2 P 1 -1 1.2591 0 0 0.11986 0 0 524.6898592317704 425.7110994928344 950.4009587246048 0 0 0 0 0 0 0 0 0 P 0.11986 - 1 + NaN NaN 92661.3 NaN 351 1004 1356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1360 19.823 NaN 30862 35 0 5873.2 0.411 -1 CCHHRCDWRHY 11 31 543.8839908756484 NaN 0 543.7694091796875 PEAK HCD FTMS 0 0 0 1359 1281.1285400390625 0.7696057992244254 1 -0.008037567138671875 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))HHRCDWRHY_ ENSG00000122435|ENST00000370141|TRMT13 0.08335046087909445 0.3418837022149213 2 H 1 -1 3.4949 0 0 0.32188 0 0 751.644341759306 194.02124963931877 945.6655913986248 0 0 0 0 0 0 0 0 0 H 0.32188 + + 1 + NaN NaN 89122 NaN 352 1006 1359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1362 19.831 NaN 13790 35 0 2668 0.411 + 8760 HHQNVLFHH 9 19 584.789408150191 NaN 0 584.7897338867188 PEAK HCD FTMS 0 0 0 1361 7110.40771484375 0.75425743936335 48 -0.4363594055175781 1 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99306.2 NaN 353 1007 1361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1364 19.839 NaN 30446 35 0 5570 0.411 + 7493 FWEERDIM 8 29 563.2531841858058 NaN 0 563.2534790039062 PEAK HCD FTMS 0 0 0 1363 5136.82568359375 1 0 0 1 Unmodified _FWEERDIM_ ENSG00000067900|ENST00000399799|ROCK1;ENSG00000134318|ENST00000315872|ROCK2;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ROCK1-DCC|1|fusion;ROCK1|p.D202Cfs*9|1|0.26|ENSG00000067900|chr18:21044168-21044174|GTTATCA/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97681.4 NaN 354 1008 1363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1367 19.855 NaN 74898 35 0 10633 0.327 -1 HPESERISM 9 23 551.2531233075852 1100.4916936819702 2 551.2530517578125 MULTI HCD FTMS 0 0 0 1366 31571.2265625 0.6094891132951804 41 -0.37554168701171875 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3139132135374 734.3139132135374 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 91282.1 NaN 355 1010 1366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1368 19.859 NaN 27519 35 0 5743.7 0.261 + -1 MMMMKEQG 8 20 525.1924248666501 1048.3702968001 2 525.6935424804688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 4 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))M(Oxidation (M))M(Oxidation (M))KEQG_ REV__ENSG00000167840|ENST00000250076|ZNF232;REV__ENST00000574735.1_1_17:5012529-5015337:-|nuORF;REV__nc|ENSG00000167840|Q9UNY5-2|ZNF232;REV__ZNF232|p.G173Efs*32|1|0.25|ENSG00000167840|chr17:5109033-5109034|-/AGTGATAAACAGCTGGGAGAAAGATACTCTTT|frameshift_variant 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86145 NaN 356 1010 1366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1369 19.863 NaN 27455 35 0 8182.7 0.261 -1 MRLDRWRKQRF 11 14 545.2985350078729 NaN 0 545.2984619140625 PEAK HCD FTMS 0 0 0 1366 4191.83203125 0.7548888907452408 2 -0.0209197998046875 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MRLDRWRKQRF_ ENST00000295400.10_1_2:70675985-70676030:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87899.5 NaN 357 1010 1366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1373 19.883 NaN 277070 35 0 28278 0.411 + 25427 SESAQSKML 9 75 498.7369273240117 995.4593017148234 2 498.7369079589844 MULTI HCD FTMS 0 0 0 1372 193763.890625 0.9399304698383155 1 -0.007974624633789062 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 136.39213081522345 0.00021731600835925866 2 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 93.642 0 0 9.4069 9.4069 92.639 0 0 0 8.564921830680703 16.478174818886373 8.564921830680703 8.564921830680703 0 2.9247425010840047 0 2.7104093769761874 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L};{[ES]|[DT]|[{I|L}C]}SA[AG]SK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DA[AG]SK{M(Oxidation (M))|F}{I|L};{[ES]|[DT]|[{I|L}C]}SA[SG]AK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DA[SG]AK{M(Oxidation (M))|F}{I|L};{[ES]|[DT]|[{I|L}C]}S{[QS]|[NT]}AK{M(Oxidation (M))|F}{I|L};{[ES]|[DT]|[{I|L}C]}SAQS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K;{[MG]|[TS]}D{[QS]|[NT]}AK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K 9.4069;8.5465;8.4819;7.6215;7.5516;6.6912;6.3701;5.9095;5.5097;5.0491 +;-;-;-;-;-;-;-;-;- + 393 NaN NaN 171408.9 NaN 358 1013 1372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1376 19.899 NaN 53421 35 0 7890.2 0.327 -1 NSSKDVAVM 9 24 483.7316752788944 965.4487976245888 2 483.73175048828125 MULTI HCD FTMS 0 0 0 1375 26897.052734375 0.6097938771098462 8 -0.07110786437988281 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 22.736283301280096 0.1639198954644489 2 AV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.7493 0 0 630.296680780642 0 630.296680780642 0 36.197887582883936 0 0 0 1 0 0 0 AV{M(Oxidation (M))|F} 3.7493 + + 10 + NaN NaN 88091.4 NaN 359 1015 1375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1377 19.903 NaN 40112 35 0 11465 0.261 -1 TPNEERNVM 9 25 553.2505813498447 1104.4866097664892 2 553.250244140625 MULTI HCD FTMS 0 0 0 1375 11677.7138671875 0.154017768823431 -15 0.12714195251464844 2 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84689 NaN 360 1015 1375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1379 19.909 NaN 26917 35 0 5807.4 0.327 -1 NAESGRGQVM 10 17 532.7429109831364 1063.4712690330728 2 532.7430419921875 MULTI HCD FTMS 0 0 0 1378 7368.11328125 0.5751199489713781 -9 0.07736968994140625 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 5.296884461304476 0.4472664531305844 2 [WQ]S 3 -1 10.458 0 0 0.98334 0 0 0 659.2942598932249 659.2942598932249 6.478174818886375 0 0 0 0 0 0 0 0 [WQ]S 0.98334 - 3 + NaN NaN 93745.2 NaN 361 1016 1378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1380 19.913 NaN 11222 35 0 3703 0.261 -1 CWGRWRRR 8 11 616.8205546200317 NaN 0 617.2552490234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGRWRRR_ ENST00000479712.1_1_13:115052026-115057011:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81623.6 NaN 362 1016 1378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1384 19.934 NaN 16094 35 0 2084.9 0.411 + -1 RHNGECEDVD 10 19 615.7438038378688 1229.4730547425374 2 615.7425537109375 MULTI HCD FTMS 0 0 0 1383 6338.734375 0.9127264234000341 13 -0.11510086059570312 1 Carbamidomethyl (C) _RHNGEC(Carbamidomethyl (C))EDVD_ REV__ENSG00000166147|ENST00000316623|FBN1;REV__ENST00000559133.5_3_15:48703189-48720097:-|nuORF 0 0.4753037046562868 2 S 1 -1 11.99 0 0 0.97519 0 0 902.4177396564031 236.99958215885002 1139.4173218152532 0 0 0 0 0 0.5 0 0 0 S 0.97519 - 1 + NaN NaN 109378.1 NaN 363 1019 1383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1386 19.942 NaN 45394 35 0 5805.3 0.327 -1 TPNEERNVM 9 26 553.2505813498447 1104.4866097664892 2 553.250732421875 MULTI HCD FTMS 0 0 0 1385 24145.25390625 0.3184525821244072 -10 0.08668899536132812 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 10.150570793230772 0.27265765907388223 2 TPNEE 5 -1 30.723 0 0 2.7817 0 0 0 531.2351778619749 531.2351778619749 23.733309973369465 0 0 0 0 0 0 0 0 TPNEE 2.7817 + + 18 + NaN NaN 99092.8 NaN 364 1020 1385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1387 19.946 NaN 31580 35 0 5423.7 0.261 -1 HQWPMTAM 8 23 509.2176136717253 NaN 0 509.21875 PEAK HCD FTMS 0 0 0 1385 8700.38671875 0.6301947838364147 1 -0.013257980346679688 2 Oxidation (M) _HQWPMTAM(Oxidation (M))_ OR5B12|p.F111Sfs*24|1|0.21|ENSG00000172362|chr11:58439820-58439820|A/-|frameshift_variant 2.0597508629832335 0.38822285293237185 2 H 1 -1 1.9897 0 0 0.19576 0 0 507.6061735331006 368.74314294986567 876.3493164829663 0 0 0 0 0 0 0 0 0 H 0.19576 + + 2 + NaN NaN 100303.2 NaN 365 1020 1385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1388 19.95 NaN 44270 35 0 8139.8 0.261 + 23629 RPQTQPPSGS 10 20 527.7672257653637 1053.5198985975273 2 527.7667846679688 MULTI HCD FTMS 0 0 0 1385 13430.0302734375 0.4599637710848975 -6 0.05042266845703125 3 Unmodified _RPQTQPPSGS_ ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B 5.731851221503515 0.44496410492002586 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99293.2 NaN 366 1020 1385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1390 19.955 NaN 52255 35 0 7257.4 0.327 + 2226 DKKGSLGH 8 37 421.2296927942566 NaN 0 421.2192687988281 PEAK HCD FTMS 0 0 0 1389 2393.9296875 0.5193893522792822 8 -0.06844902038574219 1 Unmodified _DKKGSLGH_ REV__ENSG00000177239|ENST00000371589|MAN1B1;REV__ENST00000480100.3_1_9:140000303-140000768:+|nuORF;REV__ENST00000535028.5_1_9:140000303-140001810:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84664.2 NaN 367 1021 1389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1393 19.97 NaN 11452 35 0 3831.4 0.411 + 9115 HPGFWRHHC 9 15 588.7674107948399 NaN 0 588.7669067382812 PEAK HCD FTMS 0 0 0 1392 5105.759765625 0.6297593475930122 -11 0.09405899047851562 1 Unmodified _HPGFWRHHC_ ENST00000538502.5_2_1:109869643-109869715:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104922.7 NaN 368 1023 1392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1395 19.978 NaN 124450 35 0 14567 0.327 + 19381 NPEHASVAM 9 37 486.21613375895635 970.4177145847127 2 486.2159729003906 MULTI HCD FTMS 0 0 0 1394 86248.078125 0.24833926166552436 -13 0.10976219177246094 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 60.07390631473393 0.0174780869009295 2 NPE[HA]SVA{M(Oxidation (M))|F} 9 0 + 62.4 0 0 6.4303 6.4303 91.51 0 0 0 49.55722613678404 4.977656990787693 4.977656990787693 15.528419686577806 0 1.9247425010840047 0 0 0 + + NPE[HA]SVA{M(Oxidation (M))|F};[RD][YN]SVA{M(Oxidation (M))|F} 6.4303;4.8301 +;- + 90 + NaN NaN 101468.8 NaN 369 1024 1394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1396 19.982 NaN 51570 35 0 10713 0.261 -1 0 30 532.7863138271573 1063.5580747211145 2 532.7863159179688 MULTI HCD FTMS 0 0 0 1394 15570.6640625 0.7948084586766758 3 -0.027460098266601562 2 NaN NaN 2 S 1 -1 6.9897 0 0 0.6572 0 0 227.18821495724575 746.3236178033811 973.5118327606269 0 0 0 0 0 0 0 0 0 S 0.6572 - 8 + NaN NaN 89290 NaN 370 1024 1394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1398 19.988 NaN 34842 35 0 5584.4 0.327 -1 0 20 530.2805472648115 1058.546541596423 2 530.2804565429688 MULTI HCD FTMS 0 0 0 1397 16153.37109375 0.5029346529369576 -6 0.05423927307128906 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101716.5 NaN 371 1025 1397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1399 19.992 NaN 11562 35 0 3639 0.261 + 20890 PIWYPCHRP 9 10 584.789408150191 NaN 0 584.7897338867188 PEAK HCD FTMS 0 0 0 1397 4035.306396484375 0.42805701047281447 65 -0.585540771484375 2 Unmodified _PIWYPCHRP_ MRGPRX1|p.R131P|1|0.38|ENSG00000170255|chr11:18934393-18934393|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94001.2 NaN 372 1025 1397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1402 20.005 NaN 162760 35 0 16328 0.327 + 25428 SESAQSKML 9 39 498.73689604068426 995.4592391481685 2 498.73687744140625 MULTI HCD FTMS 0 0 0 1401 127439.0625 0.5641291311438899 -9 0.0791778564453125 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 65.47368725323818 0.010552856507075443 2 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 {[ES]|[DT]|[{I|L}C]} + + 56.643 5.2288 2.4199 5.6901 5.6901 63.417 0 0 0 0 35.673647750663804 0 0 0 2.110924374808178 0 0.3807196863200844 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 5.6901 + + 101 + NaN NaN 105269.8 NaN 373 1027 1401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1403 20.01 NaN 33903 35 0 12925 0.261 + -1 WSYRQLCQ 8 14 570.7655774106428 1139.5166018880855 2 570.7656860351562 MULTI HCD FTMS 0 0 0 1401 8263.6728515625 0.8641252550532481 1 -0.00991058349609375 2 Carbamidomethyl (C) _WSYRQLC(Carbamidomethyl (C))Q_ REV__ENSG00000223611|ENST00000486479|SUPT20HL2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89666.5 NaN 374 1027 1401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1405 20.015 NaN 38502 35 0 5003.4 0.411 + -1 LFGVVGCYI 9 28 514.2676706492292 1026.5207883652583 2 514.2680053710938 MULTI HCD FTMS 0 0 0 1404 9826.7421875 0.18821723025558348 -10 0.08908843994140625 1 Carbamidomethyl (C) _LFGVVGC(Carbamidomethyl (C))YI_ REV__ENSG00000154889|ENST00000588072|MPPE1;REV__nc|ENSG00000154889|Q53F39-4|MPPE1 5.230669730166228 0.3113646817964458 2 {I|L}[R{M(Oxidation (M))|F}]N 4 -1 17.703 0 0 1.7246 0 0 0 493.21738611392817 493.21738611392817 17.703037561203843 0 0 0 0 0.5 0 0 0 {I|L}[R{M(Oxidation (M))|F}]N 1.7246 - 3 + NaN NaN 94143.7 NaN 375 1028 1404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1407 20.023 NaN 27315 35 0 5098.2 0.412 + 27973 TFDMEDEY 8 21 525.1925422429597 NaN 0 525.19287109375 PEAK HCD FTMS 0 0 0 1406 2120.809814453125 0.16096755713705035 -7 0.06080436706542969 1 Unmodified _TFDMEDEY_ ENSG00000214013|ENST00000318010|GANC 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90570.4 NaN 376 1029 1406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1410 20.039 NaN 50725 35 0 6913.3 0.327 -1 IWFVTMLSS 9 26 550.2779577613061 1098.541362589412 2 550.2781372070312 MULTI HCD FTMS 0 0 0 1409 22980.44921875 0.8023063292176743 -3 0.023529052734375 1 Oxidation (M) _IWFVTM(Oxidation (M))LSS_ ENSG00000155850|ENST00000286298|SLC26A2 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95861.4 NaN 377 1031 1409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1411 20.043 NaN 57548 35 0 9443.9 0.261 + 21828 QASNSAHEL 9 28 478.725134679985 955.43571642677 2 478.72515869140625 MULTI HCD FTMS 0 0 0 1409 23380.8828125 0.244133261917305 -11 0.09718704223632812 2 Unmodified _QASNSAHEL_ ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97904.2 NaN 378 1031 1409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1413 20.049 NaN 179370 35 0 29872 0.327 -1 EAAGEVRAM 9 42 475.2239011635181 948.4332493938363 2 475.22369384765625 MULTI HCD FTMS 0 0 0 1412 96452.609375 0.3885735842576562 -26 0.22542572021484375 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 39.94969957227396 0.06557568441294001 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 -1 + 55.143 0 0 5.8141 5.8141 85.112 0 0 0 29.737059521965108 14.973024840566467 14.973024840566467 3.4678748622465605 0 0.6549471895720985 0 0 0 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F} 5.8141;5.4485 +;- + 173 + NaN NaN 108705.1 NaN 379 1032 1412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1414 20.053 NaN 17986 35 0 4074.6 0.261 + -1 HACLQFWSQ 9 15 588.7674107948399 NaN 0 588.7687377929688 PEAK HCD FTMS 0 0 0 1412 5316.958984375 0.6558092771466156 -2 0.01731109619140625 2 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))LQFWSQ_ REV__ENSG00000188039|ENST00000524140|NWD1;REV__ENST00000438489.6_1_19:16849058-16926137:+|nuORF;REV__nc|ENSG00000188039|Q149M9|NWD1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91685.2 NaN 380 1032 1412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1416 20.059 NaN 77460 35 0 13658 0.411 -1 0 42 400.3498229980469 NaN 0 400.3498229980469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108326.6 NaN 381 1033 1415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1418 20.067 NaN 73616 35 0 7532.6 0.327 -1 TPNEERNVM 9 34 553.2505813498447 1104.4866097664892 2 553.2508544921875 MULTI HCD FTMS 0 0 0 1417 50496.03515625 0.6659939400508932 4 -0.03897285461425781 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 13.614867670302875 0.2427269026982664 2 TPNE 4 -1 28.928 0 0 2.6191 0 0 0 660.2787569635374 660.2787569635374 3.711375162600703 0 0 0 0 0 0 0 0 TPNE 2.6191 + + 16 + NaN NaN 95438.1 NaN 382 1034 1417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1419 20.071 NaN 95002 35 0 27858 0.261 + 4132 ETIGKKFEK 9 29 540.3082550805128 1078.6019572278256 2 540.3082275390625 MULTI HCD FTMS 0 0 0 1417 33196.375 0.5301955677742999 -3 0.027944564819335938 2 Unmodified _ETIGKKFEK_ ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant 5.731851221503515 0.3075653528928475 2 N 1 9 3.0989 0 0 0.28731 0 0 539.7820852569256 421.7673433893188 961.5494286462445 0 0 0 0 0 0 0 0 0 N 0.28731 - 2 + NaN NaN 99702.3 NaN 383 1034 1417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1420 20.075 NaN 33153 35 0 10175 0.261 -1 CDENGSKGYG 10 17 543.7123056746127 1085.4100584160253 2 543.7127685546875 MULTI HCD FTMS 0 0 0 1417 4364.6328125 0.2858429099109384 -4 0.03533935546875 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))DENGSKGYG_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1 0.35063188157827746 0.47344775436540215 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88020.4 NaN 384 1034 1417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1422 20.08 NaN 31974 35 0 4755.9 0.327 + 23608 RPHTNETSL 9 20 527.7672257653637 1053.5198985975273 2 527.7673950195312 MULTI HCD FTMS 0 0 0 1421 12558.447265625 0.4301130113379246 9 -0.07486915588378906 1 Unmodified _RPHTNETSL_ ENSG00000171444|ENST00000408903|MCC;nc|ENSG00000171444|P23508|MCC 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 94533.5 NaN 385 1035 1421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1423 20.085 NaN 48449 35 0 11925 0.261 + -1 MLMYMVVY 8 24 533.2441510114751 NaN 0 533.2440795898438 PEAK HCD FTMS 0 0 0 1421 6930.5498046875 1 0 0 2 Oxidation (M) _M(Oxidation (M))LMYMVVY_ REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93474.2 NaN 386 1035 1421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1426 20.098 NaN 35162 35 0 4012.4 0.411 -1 MESTRMDSN 9 28 543.7123056746127 1085.4100584160253 2 543.7123413085938 MULTI HCD FTMS 0 0 0 1425 9096.99609375 0.5957687499940042 -1 0.0076007843017578125 1 Oxidation (M) _M(Oxidation (M))ESTRMDSN_ ENSG00000101945|ENST00000376687|SUV39H1;ENST00000462786.1_1_X:48564870-48565958:+|nuORF;ENST00000482260.1_1_X:48563729-48565958:+|nuORF;nc|ENSG00000101945|O43463-2|SUV39H1 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94188.2 NaN 387 1037 1425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1428 20.106 NaN 47714 35 0 5313 0.411 + 3172 EAVVDRGGTR 10 43 530.2805472648115 1058.546541596423 2 530.2806396484375 MULTI HCD FTMS 0 0 0 1427 12722.30078125 0.39610839686913596 7 -0.05660057067871094 1 Unmodified _EAVVDRGGTR_ ENSG00000144290|ENST00000446997|SLC4A10;ENST00000461456.5_1_2:162565258-162730321:+|nuORF;ENST00000493021.5_1_2:162567177-162757603:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;nc|ENSG00000144290|Q6U841-4|SLC4A10 10.150570793230772 0.4161670024087991 2 R 1 9 18.979 0 0 1.793 0 0 884.4352114956401 0 884.4352114956401 0 4.554687406276017 0 0 0 0.3494850021680094 0 0 0 + R 1.793 + + 3 + NaN NaN 121122.2 NaN 388 1038 1427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1430 20.114 NaN 869040 35 0 105230 0.327 -1 0 70 517.2408419182894 516.2335654516894 1 517.2567138671875 MULTI HCD FTMS 0 0 0 1429 11438.8525390625 0.376751549252575 159 -1.4490203857421875 1 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q 3 -1 10.942 0 0 2.1196 0 0 0 151.04222569022377 151.04222569022377 0.753925287536596 0 0 0 0 0 0 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q 2.1196 - 41 NaN NaN 214765 NaN 389 1039 1429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1431 20.118 NaN 15477 35 0 3573.3 0.261 + 8761 HHQNVLFHH 9 13 584.7893287182973 NaN 0 584.7889404296875 PEAK HCD FTMS 0 0 0 1429 4677.9599609375 0.5303033842241355 -2 0.016048431396484375 2 Unmodified _HHQNVLFHH_ ENSG00000116183|ENST00000367662|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;PAPPA2|p.T1328S|1|0.28|ENSG00000116183|chr1:176740028-176740028|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86926.5 NaN 390 1039 1429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1433 20.124 NaN 243320 35 0 21047 0.412 + 25429 SESAQSKML 9 72 498.73689604068426 995.4592391481685 2 498.7369079589844 MULTI HCD FTMS 0 0 0 1432 165716.25 0.7335691450878622 4 -0.031156539916992188 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 125.0377797344192 0.0009059125702818869 2 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 89.473 0 0 8.9881 8.9881 92.131 0 0 0 8.208253071758875 11.108018480247779 8.208253071758875 8.208253071758875 0 2.9247425010840047 0 2.4361818737241734 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L};{[ES]|[DT]|[{I|L}C]}SA[AG]SK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DA[AG]SK{M(Oxidation (M))|F}{I|L} 8.9881;8.1635;8.0631;7.2385 +;-;-;- + 354 NaN NaN 178877.3 NaN 391 1040 1432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1436 20.139 NaN 63785 35 0 11625 0.411 + 16586 LVGFMQYLG 9 38 514.2676706492292 1026.5207883652583 2 514.2677001953125 MULTI HCD FTMS 0 0 0 1435 31372.197265625 0.6008896909780383 4 -0.03287506103515625 1 Unmodified _LVGFMQYLG_ REV__ENSG00000100350|ENST00000397224|FOXRED2;REV__ENST00000366463.6_1_22:36886057-36894231:-|nuORF;REV__nc|ENSG00000100350|Q8IWF2-2|FOXRED2 12.531546534597751 0.2520865569484384 2 {I|L}[R{M(Oxidation (M))|F}]NA 5 -1 28.478 0 0 2.7742 0 0 0 422.1781405084594 422.1781405084594 18.01997245552581 0 0 0 0 0.5 0 0 0.8494850021680094 {I|L}[R{M(Oxidation (M))|F}]NA 2.7742 - 16 + NaN NaN 103935.2 NaN 392 1042 1435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1440 20.162 NaN 138650 35 0 16117 0.327 + 21829 QASNSAHEL 9 42 478.725134679985 955.43571642677 2 478.72509765625 MULTI HCD FTMS 0 0 0 1439 88824 0.9274625355441848 3 -0.03144645690917969 1 Unmodified _QASNSAHEL_ ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3 9.38312468134398 0.279288223203164 2 H{M(Oxidation (M))|F}{I|L} 3 7 20.802 0 0 2.1772 0 0 540.2286244123062 0 540.2286244123062 0 7.614393726401687 0 0 0 0 0 0 0 H{M(Oxidation (M))|F}{I|L} 2.1772 - 25 NaN NaN 119362.7 NaN 393 1045 1439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1441 20.167 NaN 35153 35 0 9684.5 0.261 + -1 CCFMETTT 8 20 525.1925422429597 NaN 0 525.1920776367188 PEAK HCD FTMS 0 0 0 1439 4853.076171875 0.3683441158481176 9 -0.0973052978515625 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))FMETTT_ REV__ENSG00000070748|ENST00000337653|CHAT;REV__nc|ENSG00000070748|P28329-2|CHAT;REV__nc|ENSG00000070748|P28329-3|CHAT 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107760.3 NaN 394 1045 1439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1443 20.172 NaN 197010 35 0 33994 0.327 + 2984 EAAGEVRAM 9 43 475.2239011635181 948.4332493938363 2 475.223876953125 MULTI HCD FTMS 0 0 0 1442 82058.765625 0.3305858585400785 -12 0.10549163818359375 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 53.832793166522166 0.026208976789938845 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 58.638 0 0 6.1826 6.1826 85.685 0 0 0 30.22160958700539 14.973024840566467 14.973024840566467 3.4678748622465605 0 1.0044321917401078 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F} 6.1826;5.817 +;- + 204 + NaN NaN 116879.1 NaN 395 1046 1442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1444 20.177 NaN 37957 35 0 5701.7 0.261 + -1 MMIMCMNK 8 24 529.7216411144237 NaN 0 529.7215576171875 PEAK HCD FTMS 0 0 0 1442 11399.67578125 1 0 0 2 Carbamidomethyl (C) _MMIMC(Carbamidomethyl (C))MNK_ REV__CTNNA3|p.S760Kfs*6|1|0.13|ENSG00000183230|chr10:65966734-65966735|-/CCAAATCTTT|frameshift_variant;REV__ENSG00000183230|ENST00000433211|CTNNA3;REV__ENST00000373735.1_1_10:67680090-67838726:-|nuORF 0.7936320650641473 0.38822285293237185 2 G 1 -1 2.4743 0 0 0.23399 0 0 471.63205068412236 525.7633150690061 997.3953657531285 0 0 0 0 0 0 0 0 0 G 0.23399 - 1 + NaN NaN 100399.9 NaN 396 1046 1442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1445 20.18 NaN 16519 35 0 2894 0.261 -1 NCNLRALKRL 10 18 629.3658968671372 NaN 0 629.3485717773438 PEAK HCD FTMS 0 0 0 1442 3758.931640625 0.5797080364306099 7 -0.07939338684082031 3 Carbamidomethyl (C) _NC(Carbamidomethyl (C))NLRALKRL_ ENSG00000005189|ENST00000261377|REXO5;nc|ENSG00000005189|Q96IC2-2|REXO5 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92097.2 NaN 397 1046 1442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1447 20.186 NaN 62972 35 0 5778.2 0.411 -1 HPESERISM 9 40 551.2531233075852 1100.4916936819702 2 551.2530517578125 MULTI HCD FTMS 0 0 0 1446 16447.43359375 0.3175211358098799 78 -0.7053565979003906 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3139132135374 734.3139132135374 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 9 + NaN NaN 113978.9 NaN 398 1047 1446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1449 20.194 NaN 88779 35 0 10441 0.327 + 8573 HAVDGDSKL 9 25 471.2378849312388 940.4612169292776 2 471.23785400390625 MULTI HCD FTMS 0 0 0 1448 51354.04296875 0.8864700231370581 -1 0.00827789306640625 1 Unmodified _HAVDGDSKL_ ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32 19.361941925380144 0.1930734562688509 2 [HA]VD[DG]SK{I|L} 9 0 + 32.866 0 0 3.4946 3.4946 88.982 0 0 0 1.6677248003734562 17.408037477650645 1.6677248003734562 32.86561238325739 0 1.274227503252014 0 0 0 + + [HA]VD[DG]SK{I|L} 3.4946 + + 12 NaN NaN 104108.4 NaN 399 1048 1448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1450 20.198 NaN 63354 35 0 15926 0.261 + 12578 KTNEKIYAL 9 27 540.3082550805128 1078.6019572278256 2 540.3081665039062 MULTI HCD FTMS 0 0 0 1448 23258.474609375 0.37147249213450917 11 -0.11435508728027344 2 Unmodified _KTNEKIYAL_ REV__tr|U7SM91|U7SM91_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01919PE=4SV=1 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112839.3 NaN 400 1048 1448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1451 20.202 NaN 35414 35 0 11682 0.261 + -1 VQCNDDNLK 9 16 553.2505813498447 1104.4866097664892 2 553.2510375976562 MULTI HCD FTMS 0 0 0 1448 8407.779296875 0.11089048959343978 18 -0.1818370819091797 3 Carbamidomethyl (C) _VQC(Carbamidomethyl (C))NDDNLK_ REV__ENSG00000174130|ENST00000508254|TLR6;REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105281.8 NaN 401 1048 1448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1453 20.207 NaN 31140 35 0 5540.7 0.327 -1 TPNEERNVM 9 25 553.2505813498447 1104.4866097664892 2 553.251220703125 MULTI HCD FTMS 0 0 0 1452 10229.0703125 0.1349115592818241 19 -0.18416404724121094 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94789.9 NaN 402 1049 1452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1454 20.212 NaN 12113 35 0 4583.1 0.261 -1 SCMGWDCRRT 10 12 644.2538452148438 NaN 0 644.2538452148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))M(Oxidation (M))GWDCRRT_ ENST00000330551.3_1_21:46354729-46357558:-|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94467.8 NaN 403 1049 1452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1456 20.217 NaN 97920 35 0 14251 0.327 -1 NPEHASVAM 9 29 486.21613375895635 970.4177145847127 2 486.21600341796875 MULTI HCD FTMS 0 0 0 1455 65322.171875 0.1880860453529785 13 -0.12755966186523438 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 30.636539890814138 0.10832830463492794 2 VA{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.2454 0 0 635.2665743032659 0 635.2665743032659 0 41.197887582883936 0 0 0 1.5 0 0 0 VA{M(Oxidation (M))|F} 4.2454 + + 32 + NaN NaN 99256.7 NaN 404 1050 1455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1457 20.222 NaN 40857 35 0 4972.5 0.261 -1 0 31 511.74099618323095 1021.4674394332619 2 511.7406921386719 MULTI HCD FTMS 0 0 0 1455 11979.380859375 0.2789293361533798 -11 0.10336685180664062 2 NaN NaN 2 T{[CA]|SS}D{[{M(Oxidation (M))|F}H]|[RQ]} 6 -1 9.6658 0 0 0.94626 0 0 329.15666170064316 0 329.15666170064316 0 9.665762445130499 0 0 0 0 0 0 0 T{[CA]|SS}D{[{M(Oxidation (M))|F}H]|[RQ]} 0.94626 - 20 + NaN NaN 104168.5 NaN 405 1050 1455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1458 20.225 NaN 18975 35 0 5298.4 0.261 + -1 FIFCGMILC 9 13 588.766968715665 NaN 0 588.76806640625 PEAK HCD FTMS 0 0 0 1455 1905.51220703125 0.2710016450419128 -3 0.03165626525878906 3 2 Carbamidomethyl (C),Oxidation (M) _FIFC(Carbamidomethyl (C))GM(Oxidation (M))ILC(Carbamidomethyl (C))_ REV__ENST00000324868.12_1_12:32899940-32900153:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100094.2 NaN 406 1050 1455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1460 20.231 NaN 25112 35 0 6741.6 0.327 -1 NAESGRGQVM 10 15 532.7429059035491 1063.471258873898 2 532.7432250976562 MULTI HCD FTMS 0 0 0 1459 11789.16015625 0.7939430904307632 -26 0.24261093139648438 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92892.5 NaN 407 1051 1459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1461 20.235 NaN 9155.8 35 0 3516.7 0.261 + -1 YNYVLLLIIC 10 7 642.3570772356709 NaN 0 642.3577270507812 PEAK HCD FTMS 0 0 0 1459 1868.0283203125 0.278927894160097 1 -0.013452529907226562 2 Carbamidomethyl (C) _YNYVLLLIIC(Carbamidomethyl (C))_ REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85604 NaN 408 1051 1459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1462 20.239 NaN 35047 35 0 11867 0.262 + 9997 IEMRSSQNS 9 25 526.2453611534562 NaN 0 526.2451171875 PEAK HCD FTMS 0 0 0 1459 2006.6640625 0.2540787616414053 3 -0.029157638549804688 3 Unmodified _IEMRSSQNS_ REV__ABCA13|p.E1876Q|1|0.26|ENSG00000179869|chr7:48275292-48275292|G/C|missense_variant 1.4819007175156935 0.28806575819904134 2 R 1 -1 3.0989 0 0 0.295 0 0 373.15879984421855 518.1767672174436 891.3355670616622 0 0 0 0 0 0 0 0 0 R 0.295 + + 1 + NaN NaN 106722.3 NaN 409 1051 1459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1465 20.252 NaN 43178 35 0 5599.9 0.411 -1 SESAQSKML 9 38 498.73689604068426 995.4592391481685 2 498.73687744140625 MULTI HCD FTMS 0 0 0 1464 21887.125 0.09688681450781789 17 -0.15433883666992188 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 27.223235318498237 0.1251536255799991 2 {[ES]|[DT]|[{I|L}C]}SAQ[KS]{M(Oxidation (M))|F}{I|L} 9 -1 {[ES]|[DT]|[{I|L}C]} + + 26.273 5.2288 2.4199 2.6392 2.6392 59.957 0 0 0 0 19.282891498745585 0 0 0 1.6307196863200843 0 0 0 {[ES]|[DT]|[{I|L}C]}SAQ[KS]{M(Oxidation (M))|F}{I|L} 2.6392 + + 19 + NaN NaN 99395.1 NaN 410 1053 1464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1467 20.26 NaN 54501 35 0 6942.7 0.411 + 2971 EAAATEIRR 9 49 508.7777404559049 1015.5409279786098 2 508.7776184082031 MULTI HCD FTMS 0 0 0 1466 17693.328125 0.7385895499218605 -3 0.029157638549804688 1 Unmodified _EAAATEIRR_ ENSG00000175029|ENST00000309035|CTBP2;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545-3|CTBP2;nc|ENSG00000175029|P56545|CTBP2 17.11289562659939 0.2125047172822487 2 R 1 8 20.797 0 0 2.0479 0 0 841.4296741717724 0 841.4296741717724 0 6.817496819840656 0 0 0 0.3807196863200844 0 0 0 + R 2.0479 + + 9 + NaN NaN 113923.4 NaN 411 1054 1466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1469 20.268 NaN 15506 35 0 2428.1 0.411 -1 MRRTKKMC 8 27 584.7893287182973 NaN 0 584.7899780273438 PEAK HCD FTMS 0 0 0 1468 3992.299560546875 0.45257547851483687 13 -0.12347984313964844 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RRTKKMC(Carbamidomethyl (C))_ ENST00000247833.11_2_12:70195486-70206581:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90347 NaN 412 1055 1468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1472 20.283 NaN 75047 35 0 6195.9 0.327 + 4156 ETPGAPVRR 9 37 491.77483303973844 981.5351131462769 2 491.77484130859375 MULTI HCD FTMS 0 0 0 1471 23773.826171875 0.5589249842362956 5 -0.053829193115234375 1 Unmodified _ETPGAPVRR_ ENSG00000021762|ENST00000263650|OSBPL5;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;nc|ENSG00000021762|Q9H0X9-3|OSBPL5 7.289230182591677 0.29575926068275815 2 R 1 8 15.485 0 0 1.5776 0 0 807.4235999400254 0 807.4235999400254 0 15.484550065040281 0 0 0 0 0 0 0 + R 1.5776 + + 1 + NaN NaN 116310.9 NaN 413 1057 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1473 20.288 NaN 36617 35 0 4016.9 0.261 + -1 DLRHGETS 8 29 478.725134679985 955.43571642677 2 478.72503662109375 MULTI HCD FTMS 0 0 0 1471 12903.306640625 0.1347308553298453 15 -0.13741683959960938 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DLRHGETS_ REV__ENST00000498488.5_1_1:24717891-24727878:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97171.1 NaN 414 1057 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1474 20.291 NaN 24339 35 0 4966.6 0.261 -1 LLAPSNLTW 9 18 528.7903916546969 NaN 0 528.7915649414062 PEAK HCD FTMS 0 0 0 1471 2097.37548828125 0.23432946507030716 2 -0.024814605712890625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLAPSNLTW_ ENST00000219069.5_1_16:3333727-3333910:+|nuORF 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101214 NaN 415 1057 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1475 20.295 NaN 72072 35 0 13184 0.263 + -1 YFCWFFAC 8 27 400.82633321038753 NaN 0 400.3509216308594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _YFC(Carbamidomethyl (C))WFFAC(Carbamidomethyl (C))_ REV__ENST00000497888.1_1_2:128260300-128262356:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85438.8 NaN 416 1057 1471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1477 20.3 NaN 406940 35 0 66935 0.411 + 2985 EAAGEVRAM 9 63 475.2239011635181 948.4332493938363 2 475.22381591796875 MULTI HCD FTMS 0 0 0 1476 248222.25 1 0 0 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 118.0683919894846 0.0016252157255221692 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 72.59 0 0 7.6537 7.6537 89.441 0 0 0 7.147642715192504 11.36475816367691 7.147642715192504 6.355129762210922 0 2.0743923658886185 0 0.3252574989159953 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}[RD]V[VG]A{M(Oxidation (M))|F} 7.6537;6.9836;6.4554;6.3761;5.693;5.1972;5.1179;5.009;4.4348;4.3016 +;-;-;-;-;-;-;-;-;- + 611 + NaN NaN 203638.5 NaN 417 1058 1476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1479 20.308 NaN 100520 35 0 18964 0.327 + 23592 RPEEGKESL 9 34 522.7693939634087 1043.5242349936173 2 522.7694091796875 MULTI HCD FTMS 0 0 0 1478 30289.01953125 1 0 0 1 Unmodified _RPEEGKESL_ ENSG00000157600|ENST00000372068|TMEM164 8.155526934196011 0.2891920862272901 2 {I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K 4 7 13.812 0 0 1.3236 0 0 0 565.2373751275999 565.2373751275999 13.812281309285623 0 0 0 0 0 0 0 0 {I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K 1.3236 - 7 + NaN NaN 116373.3 NaN 418 1059 1478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1480 20.313 NaN 55576 35 0 5409.5 0.261 -1 HPESERISM 9 31 551.2531233075852 1100.4916936819702 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1478 11709.107421875 0.22604676083485978 90 -0.7934188842773438 2 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 1.4819007175156935 0.3397831423917744 2 E{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.95026 0 0 737.3395863263687 0 737.3395863263687 0 10.45757490560675 0 0 0 0 0 0 0 E{[ES]|[DT]|[{I|L}C]} 0.95026 + + 1 NaN NaN 98691.4 NaN 419 1059 1478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1481 20.316 NaN 25030 35 0 3578.4 0.261 + -1 WERECREL 8 19 589.2744409549977 1176.5343289767952 2 589.2748413085938 MULTI HCD FTMS 0 0 0 1478 10030.89453125 0.7603586811247519 -9 0.09097671508789062 3 Carbamidomethyl (C) _WEREC(Carbamidomethyl (C))REL_ REV__ENSG00000188735|ENST00000449592|TMEM120B 1.844237919475145 0.5392561982033289 2 M{I|L} 2 -1 20.969 0 0 1.7823 0 0 914.3844471662125 0 914.3844471662125 0 15.484550065040281 0 0 0 0 0 0 0 M{I|L} 1.7823 - 2 NaN NaN 113823.6 NaN 420 1059 1478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1484 20.329 NaN 28248 35 0 5063 0.411 + -1 CWGEHTYF 8 28 550.2173509963326 NaN 0 550.2171020507812 PEAK HCD FTMS 0 0 0 1483 9146.3681640625 0.716233493862116 31 -0.2597827911376953 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 2 G 1 -1 3.4949 0 0 0.31817 0 0 548.6538659557526 489.71149622135005 1038.3653621771027 0 0 0 0 0 0 0 0 0 G 0.31817 + + 1 + NaN NaN 95523.3 NaN 421 1061 1483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1487 20.345 NaN 74472 35 0 7746.8 0.327 + 26441 STLDSTDQR 9 28 511.74099618323095 1021.4674394332619 2 511.74090576171875 MULTI HCD FTMS 0 0 0 1486 37666.63671875 0.8770344726847263 2 -0.020984649658203125 1 Unmodified _STLDSTDQR_ REV__ENSG00000170871|ENST00000307659|KIAA0232 3.5964929083625545 0.32375295897743744 2 D{[{M(Oxidation (M))|F}H]|[RQ]} 3 -1 11.695 0 0 1.1449 0 0 604.2692715639245 0 604.2692715639245 0 3.1112061033247347 0 0 0 0.4247425010840047 0 0 0 D{[{M(Oxidation (M))|F}H]|[RQ]} 1.1449 + + 21 + NaN NaN 100530.5 NaN 422 1063 1486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1488 20.349 NaN 49742 35 0 16653 0.261 + -1 CMPTCTCMCAC 11 16 612.1806859661191 NaN 0 612.1802978515625 PEAK HCD FTMS 0 0 0 1486 28573.232421875 0.6547843156421781 222 -2.1243362426757812 2 Carbamidomethyl (C) _CMPTCTC(Carbamidomethyl (C))MCAC_ REV__ENST00000544665.7_1_16:31343047-31343377:+|nuORF 0.3070304955306653 0.3412491863730806 2 Y 1 -1 3.9794 0 0 0.32555 0 0 687.1849670476694 369.0656832330688 1056.2506502807382 0 0 0 0 0 0 0 0 0 Y 0.32555 - 2 + NaN NaN 103405.1 NaN 423 1063 1486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1489 20.353 NaN 15052 35 0 4384.2 0.261 -1 KKKRIWHYG 9 15 629.3659018380805 NaN 0 629.8411254882812 PEAK HCD FTMS 0 0 0 1486 1298.0650634765625 0.24149957744525116 -8 0.07701492309570312 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KKKRIWHYG_ MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|16|3|sense 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92748 NaN 424 1063 1486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1492 20.366 NaN 25554 35 0 4527.9 0.327 + 12556 KSRVLKQHV 9 16 547.8427361078221 NaN 0 547.8427734375 PEAK HCD FTMS 0 0 0 1491 4864.35107421875 0.681254874499899 -14 0.1352214813232422 1 Unmodified _KSRVLKQHV_ ENSG00000136286|ENST00000258787|MYO1G;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91006 NaN 425 1065 1491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1493 20.37 NaN 30167 35 0 11376 0.261 -1 RCMAICKP 8 19 526.2453580190306 NaN 0 526.24560546875 PEAK HCD FTMS 0 0 0 1491 3697.302001953125 0.5561730747746482 -4 0.03653907775878906 2 2 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))M(Oxidation (M))AIC(Carbamidomethyl (C))KP_ ENSG00000187857|ENST00000641576|OR6C75 0.6903765706972694 0.38822285293237185 2 A 1 -1 1.9897 0 0 0.18941 0 0 831.9362593956799 144.47620569400627 976.4124650896862 0 0 0 0 0 0 0 0 0 A 0.18941 + + 1 + NaN NaN 89889.2 NaN 426 1065 1491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1495 20.376 NaN 52771 35 0 4967.8 0.411 -1 SESAQSKML 9 37 498.7369403668236 995.4593278004472 2 498.73675537109375 MULTI HCD FTMS 0 0 0 1494 32443.3984375 0.24712107492881683 -34 0.3268852233886719 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 26.020703789607367 0.13554323117744113 2 K{M(Oxidation (M))|F}{I|L} 3 -1 29.693 0 0 2.9828 0 0 589.234178611525 0 589.234178611525 0 9.030899869919438 0 0 0 0.5 0 0 0 K{M(Oxidation (M))|F}{I|L} 2.9828 + + 33 NaN NaN 107727.6 NaN 427 1066 1494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1502 20.421 NaN 32030 35 0 11781 0.411 -1 LVMNCFKMW 9 23 614.7877793518486 NaN 0 614.787841796875 PEAK HCD FTMS 0 0 0 1501 9657.244140625 0.5886628585306849 -6 0.0451202392578125 1 Carbamidomethyl (C) _LVMNC(Carbamidomethyl (C))FKMW_ ENST00000252725.9_1_7:98992305-98992383:+|nuORF 0.6014990680409731 0.29233206172879045 2 M 1 -1 3.9794 0 0 0.32417 0 0 667.1992636824097 426.29844080142817 1093.4977044838379 0 0 0 0 0 0 0 0 0 M 0.32417 + + 1 + NaN NaN 118244.8 NaN 428 1072 1501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1504 20.429 NaN 79934 35 0 12924 0.327 -1 EAAGEVRAM 9 31 475.2239011635181 948.4332493938363 2 475.22381591796875 MULTI HCD FTMS 0 0 0 1503 37244.83984375 0.15004633889085287 15 -0.12664222717285156 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 12.240655878213236 0.2545997876781172 2 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 35.864 0 0 3.7814 3.7814 82.204 0 0 0 16.65546248849069 5.6424927368726046 5.6424927368726046 3.4678748622465676 0 0 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]} 3.7814;3.4157 +;- + 55 + NaN NaN 100059.9 NaN 429 1073 1503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1505 20.433 NaN 12357 35 0 3416.4 0.261 + -1 MCMIIICIR 9 12 584.7893287182973 NaN 0 584.7893676757812 PEAK HCD FTMS 0 0 0 1503 2228.98291015625 0.2526821927729223 31 -0.268768310546875 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))MIIICIR_ REV__GUCY2F|p.R243C|1|0.42|ENSG00000101890|chrX:109475210-109475210|G/A|missense_variant 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98190.3 NaN 430 1073 1503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1507 20.439 NaN 51219 35 0 5536.5 0.411 -1 HPESERISM 9 29 551.2531233075852 1100.4916936819702 2 551.2532958984375 MULTI HCD FTMS 0 0 0 1506 4215.44287109375 0.08138000380071293 105 -0.9359874725341797 1 Oxidation (M) _HPESERISM(Oxidation (M))_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 -1 31.198 0 0 2.8349 0 0 0 734.3139742486936 734.3139742486936 31.197887582883936 0 0 0 0 0.5 0 0 0 HPE 2.8349 + + 5 + NaN NaN 117537 NaN 431 1074 1506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1509 20.447 NaN 19265 35 0 2689.1 0.411 + -1 LHGCLERMF 9 19 589.7755096837192 NaN 0 589.7762451171875 PEAK HCD FTMS 0 0 0 1508 6576.16943359375 1 0 0 1 Carbamidomethyl (C),Oxidation (M) _LHGC(Carbamidomethyl (C))LERM(Oxidation (M))F_ REV__ENSG00000135541|ENST00000265602|AHI1;REV__ENST00000531788.5_1_6:135756348-135768167:-|nuORF;REV__nc|ENSG00000135541|Q8N157-2|AHI1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85432.8 NaN 432 1075 1508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1511 20.455 NaN 29566 35 0 5100.5 0.411 -1 DSQERMFW 8 34 557.7324835910446 NaN 0 557.7332763671875 PEAK HCD FTMS 0 0 0 1510 4242.37353515625 0.6130976557946337 -5 0.04143714904785156 1 Oxidation (M) _DSQERM(Oxidation (M))FW_ ENSG00000173757|ENST00000293328|STAT5B 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116619.8 NaN 433 1076 1510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1513 20.463 NaN 113580 35 0 12722 0.327 + 3127 EANQAINPK 9 45 492.75902100434354 983.5034890754871 2 492.7588806152344 MULTI HCD FTMS 0 0 0 1512 36856.453125 0.41015295101404836 -8 0.06427955627441406 1 Unmodified _EANQAINPK_ ENSG00000100201|ENST00000403230|DDX17;ENSG00000108654|ENST00000225792|DDX5;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000108654|P17844-2|DDX5 32.78568957990786 0.09846250359632436 2 {[CP]|[EA]}NQA{I|L}N[KP] 9 0 + 37.386 0 0 3.8013 3.8013 86.014 0 0 0 24.478846374060204 7.147642715192511 7.147642715192511 9.208187539523756 0 0.805462187404089 0 0 0 + + {[CP]|[EA]}NQA{I|L}N[KP];{[CP]|[EA]}NQA{I|L}GG[KP];{[CP]|[EA]}N[AG]A{I|L}N[KP];{[CP]|[EA]}GGQA{I|L}N[KP];{[CP]|[EA]}N[AG]A{I|L}GG[KP];{[CP]|[EA]}GGQA{I|L}GG[KP];{[CP]|[EA]}GG[AG]A{I|L}N[KP] 3.8013;2.8651;2.8651;2.8651;1.9332;1.9332;1.9332 +;-;-;-;-;-;- + 70 + NaN NaN 122944.2 NaN 434 1077 1512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1514 20.467 NaN 32003 35 0 7384.2 0.261 + 34633 YPRATAPINS 10 16 545.2879075831166 1088.5612622330332 2 545.2879028320312 MULTI HCD FTMS 0 0 0 1512 1506.12548828125 0.1207807810488811 -6 0.04953765869140625 2 Unmodified _YPRATAPINS_ REV__ENSG00000162337|ENST00000294304|LRP5;REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101170.4 NaN 435 1077 1512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1516 20.473 NaN 31358 35 0 5311.5 0.327 -1 NAESGRGQVM 10 20 532.7429059035491 1063.471258873898 2 532.7431030273438 MULTI HCD FTMS 0 0 0 1515 5129.541015625 0.3454498532940539 1 -0.009960174560546875 1 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 2.9952420565917617 0.4594494122822477 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85899.8 NaN 436 1078 1515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1517 20.477 NaN 40460 35 0 11676 0.261 + -1 RPLSDCFQ 8 31 511.7413330078125 NaN 0 511.7413330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _RPLSDC(Carbamidomethyl (C))FQ_ REV__ENSG00000114166|ENST00000263754|KAT2B;REV__ENST00000469085.1_1_3:20153091-20156403:+|nuORF;REV__KAT2B|p.Y301H|1|0.22|ENSG00000114166|chr3:20111645-20111645|T/C|missense_variant 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94721.8 NaN 437 1078 1515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1519 20.483 NaN 13296 35 0 4405.3 0.411 + -1 FCMTIFMLN 9 17 588.7670750880517 NaN 0 588.7678833007812 PEAK HCD FTMS 0 0 0 1518 4774.6162109375 0.7984806156581805 1 -0.0080413818359375 1 Carbamidomethyl (C) _FC(Carbamidomethyl (C))MTIFMLN_ REV__ENSG00000151715|ENST00000281441|TMEM45B;REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87351.3 NaN 438 1079 1518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1521 20.491 NaN 29749 35 0 5089.4 0.411 + 9056 HPESKHEIL 9 30 545.2879075831166 1088.5612622330332 2 545.2880859375 MULTI HCD FTMS 0 0 0 1520 5459.671875 0.4378276833264574 -4 0.03602790832519531 1 Unmodified _HPESKHEIL_ ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103041.2 NaN 439 1080 1520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1523 20.499 NaN 110730 35 0 12753 0.327 + 25430 SESAQSKML 9 31 498.7369403668236 995.4593278004472 2 498.7369079589844 MULTI HCD FTMS 0 0 0 1522 69704.203125 0.5309362900588269 -19 0.16177940368652344 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 40.23920728925047 0.06424668180817725 2 {[ES]|[DT]|[{I|L}C]}SAQ[KS]{M(Oxidation (M))|F}{I|L} 9 0 {[ES]|[DT]|[{I|L}C]} + + 32.324 5.2288 2.4199 3.2471 3.2471 60.256 0 0 0 0 25.33432574970952 0 0 0 1.6861818737241734 0 0 0.4247425010840047 + + {[ES]|[DT]|[{I|L}C]}SAQ[KS]{M(Oxidation (M))|F}{I|L} 3.2471 + + 23 + NaN NaN 103321.3 NaN 440 1081 1522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1524 20.503 NaN 54644 35 0 8555.2 0.261 -1 HPYQPDPKM 9 23 564.7607268794001 1127.5069008256 2 564.76025390625 MULTI HCD FTMS 0 0 0 1522 12880.5068359375 0.14146246678168733 -14 0.11528396606445312 2 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 90458.9 NaN 441 1081 1522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1526 20.509 NaN 70301 35 0 11783 0.411 -1 HPFHCSQCQ 9 42 400.8263825036243 NaN 0 400.3502197265625 PEAK HCD FTMS 0 0 0 1525 1785.550048828125 0.8725532929623852 -5 0.04594993591308594 1 2 Carbamidomethyl (C) _HPFHC(Carbamidomethyl (C))SQC(Carbamidomethyl (C))Q_ ENSG00000167625|ENST00000301215|ZNF526 1.1933415558491238 0.28946407562688115 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105769.6 NaN 442 1082 1525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1530 20.532 NaN 118440 35 0 16040 0.411 + 130 AEDKENYKKF 10 53 424.5468835204871 1270.6188211616613 3 424.5470275878906 MULTI HCD FTMS 0 0 0 1529 38712.890625 0.6225523963540246 -8 0.06896018981933594 1 Unmodified _AEDKENYKKF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 20.41453444215458 0.3201613495159799 2 AED 3 7 47.803 0 0 3.7622 0 0 0 952.4875035412406 952.4875035412406 40.81289336615193 0 0 0 0 0.7396518287104438 1.3979400086720375 0.5 0 + AED 3.7622 + + 11 + NaN NaN 135792.8 NaN 443 1085 1529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1532 20.54 NaN 16526 35 0 2379.7 0.411 + 703 APYHRSHKEF 10 31 636.3170142882038 1270.6194756432076 2 636.3173217773438 MULTI HCD FTMS 0 0 0 1531 9043.380859375 1 0 0 1 Unmodified _APYHRSHKEF_ ENST00000376621.7_1_6:30524544-30524637:-|nuORF 0.776531954647913 0.4711933975711956 2 T 1 10 5.9691 0 0 0.46978 0 0 616.7949039652764 549.7468966119749 1166.5418005772513 0 0 0 0 0 0.3494850021680094 0 0 0 T 0.46978 - 3 + NaN NaN 94454.2 NaN 444 1086 1531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1535 20.555 NaN 25642 35 0 4427.6 0.412 -1 QNCHCHHG 8 19 525.1925263661145 NaN 0 525.1926879882812 PEAK HCD FTMS 0 0 0 1534 6438.791015625 0.8565141291623362 -5 0.03855323791503906 1 2 Carbamidomethyl (C) _QNC(Carbamidomethyl (C))HC(Carbamidomethyl (C))HHG_ SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|70|3|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|53|1|anti-sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|79|3|anti-sense 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92749.8 NaN 445 1088 1534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1537 20.563 NaN 45594 35 0 6122.5 0.327 -1 RSEHDLTPM 9 20 551.2531233075852 1100.4916936819702 2 551.2530517578125 MULTI HCD FTMS 0 0 0 1536 6883.7578125 0.13289238024926342 120 -1.1099433898925781 1 Oxidation (M) _RSEHDLTPM(Oxidation (M))_ ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENST00000532145.1_1_15:101605000-101609050:+|nuORF 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81138.4 NaN 446 1089 1536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1538 20.568 NaN 34925 35 0 8538 0.261 -1 MSLYYQYM 8 18 557.7324835910446 NaN 0 557.7318115234375 PEAK HCD FTMS 0 0 0 1536 6251.9287109375 0.9035137535878894 7 -0.06339073181152344 2 Oxidation (M) _M(Oxidation (M))SLYYQYM_ ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97262.5 NaN 447 1089 1536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1541 20.581 NaN 134280 35 0 17372 0.411 + 22229 QNALRREP 8 62 492.2728265180225 982.531100102845 2 492.7590637207031 MULTI HCD FTMS 0 0 0 1540 5228.7939453125 0.7609455061837388 -4 0.03307342529296875 1 Unmodified _QNALRREP_ ENST00000601807.5_2_19:49952902-49954779:-|nuORF 7.910154910731844 0.5302565402355366 2 NQA{I|L}N[KP] 7 5 26.955 0 0 2.7434 0 0 199.10574807289237 0 199.10574807289237 0 5.496360081059493 0 0 0 0 0 0 0 NQA{I|L}N[KP] 2.7434 - 124 + NaN NaN 136338.3 NaN 448 1091 1540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1543 20.589 NaN 48544 35 0 7285 0.327 + 3304 EEGQLRSM 8 28 475.2239011635181 948.4332493938363 2 475.2234802246094 MULTI HCD FTMS 0 0 0 1542 8854.65234375 0.03567227492197013 34 -0.3100128173828125 1 Unmodified _EEGQLRSM_ REV__ENST00000454678.6_1_6:30166895-30168914:-|nuORF 2.302733041254933 0.5385759549224092 2 V 1 -1 5.4846 0 0 0.57827 0 0 457.18248711147925 389.1608065240844 846.3432936355637 0 0 0 0 0 0 0 0 0 V 0.57827 - 1 + NaN NaN 88101.6 NaN 449 1092 1542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1544 20.593 NaN 36072 35 0 11528 0.261 + 34634 YPRATAPINS 10 16 545.2879075831166 1088.5612622330332 2 545.2881469726562 MULTI HCD FTMS 0 0 0 1542 10945.1767578125 0.8777269940735464 8 -0.07207489013671875 2 Unmodified _YPRATAPINS_ REV__ENSG00000162337|ENST00000294304|LRP5;REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87935.2 NaN 450 1092 1542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1546 20.599 NaN 92692 35 0 8021.7 0.327 + 25135 SAHQENTSL 9 39 493.7304249993843 985.4462970655686 2 493.7304382324219 MULTI HCD FTMS 0 0 0 1545 37002.2890625 0.5466692921174495 -4 0.03540992736816406 1 Unmodified _SAHQENTSL_ ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF;nc|ENSG00000125850|Q9BRP0-2|OVOL2 11.494710602746466 0.2610445893512368 2 NTS{I|L} 4 5 38.175 0 0 3.8739 0 0 552.2299061505875 0 552.2299061505875 0 27.71775040875461 0 0 0 0.5 0 0.4247425010840047 0 + NTS{I|L} 3.8739 + + 27 NaN NaN 107935.1 NaN 451 1093 1545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1547 20.603 NaN 33296 35 0 11100 0.261 + 14305 LDFWMLVY 8 16 543.7693963819677 NaN 0 543.76953125 PEAK HCD FTMS 0 0 0 1545 3877.76416015625 0.41013688683415755 -13 0.10808753967285156 2 Unmodified _LDFWMLVY_ ENST00000358127.8_1_9:36840353-36840380:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98082.7 NaN 452 1093 1545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1549 20.609 NaN 32128 35 0 5289.1 0.411 + 35228 YVMPVFVLF 9 31 557.8037860948195 1113.593019256439 2 557.8041381835938 MULTI HCD FTMS 0 0 0 1548 7240.75634765625 0.14057035256992387 -13 0.10992622375488281 1 Unmodified _YVMPVFVLF_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|79 2.302733041254933 0.33356062215410776 2 D 1 9 3.4949 0 0 0.31384 0 0 556.7669827347578 438.7636812799438 995.5306640147016 0 0 0 0 0 0 0 0 0 D 0.31384 - 1 + NaN NaN 101421.1 NaN 453 1094 1548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1551 20.617 NaN 146820 35 0 16582 0.327 + 25431 SESAQSKML 9 39 498.7369403668236 995.4593278004472 2 498.7368469238281 MULTI HCD FTMS 0 0 0 1550 109791.7578125 0.8362828345870424 -5 0.04349517822265625 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 57.24910588100465 0.021429789259086996 2 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 {[ES]|[DT]|[{I|L}C]} + + 49.825 5.2288 2.4199 5.0053 5.0053 62.322 0 0 0 0 41.86645088746296 0 0 0 2.110924374808178 0 0 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 5.0053 + + 51 + NaN NaN 116972.8 NaN 454 1095 1550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1552 20.621 NaN 75675 35 0 16003 0.262 + 4133 ETIHADSVAKR 11 35 409.55439714079654 1225.6413620225896 3 409.55450439453125 MULTI HCD FTMS 0 0 0 1550 16967.55078125 0.9380556601752543 -1 0.008050918579101562 2 Unmodified _ETIHADSVAKR_ ENSG00000198736|ENST00000361871|MSRB1;ENST00000361871.7_2_16:1990815-1993322:-|nuORF;ENST00000473663.1_1_16:1989075-1991398:-|nuORF 2.0839675508343545 0.40978109276162705 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114249.3 NaN 455 1095 1550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1554 20.627 NaN 191430 35 0 48490 0.411 -1 HPYQPDPKM 9 44 564.7607268794001 1127.5069008256 2 564.7606811523438 MULTI HCD FTMS 0 0 0 1553 83884.0703125 0.9212717838855962 1 -0.008045196533203125 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 24.990960013464015 0.14443998892849796 2 HPR 3 -1 34.693 0 0 3.0769 0 0 0 734.290295838282 734.290295838282 24.235162698957282 0 0 0 0 1 0 0 0 HPR 3.0769 - 22 + NaN NaN 143297.2 NaN 456 1096 1553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1556 20.635 NaN 12579 35 0 2910.4 0.411 -1 HCYHLYNGL 9 19 588.7667246035444 NaN 0 588.7673950195312 PEAK HCD FTMS 0 0 0 1555 4081.289306640625 0.6876370896606486 3 -0.026086807250976562 1 Carbamidomethyl (C) _HC(Carbamidomethyl (C))YHLYNGL_ ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 0.6014990680409731 0.29233206172879045 2 N 1 -1 5.4846 0 0 0.46656 0 0 376.3984871936137 682.0522554986936 1058.4507426923074 0 0 0 0 0 0 0 0 0 N 0.46656 + + 1 + NaN NaN 89208.7 NaN 457 1097 1555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1558 20.643 NaN 76607 35 0 8574.8 0.411 + 3095 EAIREHQM 8 45 507.2450614945949 1012.4755700559898 2 507.24505615234375 MULTI HCD FTMS 0 0 0 1557 19831.28515625 0.48674226971560125 -3 0.026067733764648438 1 Unmodified _EAIREHQM_ ENSG00000171703|ENST00000343484|TCEA2;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3;ENST00000395053.7_1_20:62701832-62703530:+|nuORF;ENST00000461072.5_1_20:62701832-62703375:+|nuORF;ENST00000465111.5_1_20:62701563-62703530:+|nuORF;ENST00000477783.5_1_20:62701125-62703530:+|nuORF;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000171703|Q15560-2|TCEA2;nc|ENSG00000187735|P23193-2|TCEA1 32.30548876998284 0.3297748069446609 2 HQM 3 5 31.95 0 0 3.1557 0 0 598.3101673810562 0 598.3101673810562 0 20.981362441963327 0 0 0 0.5752574989159953 0 0 0 + HQM 3.1557 + + 18 NaN NaN 110426.6 NaN 458 1098 1557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1560 20.651 NaN 24502 35 0 5342.4 0.327 + 19446 NPSFVPVWY 9 16 554.7783203125 NaN 0 554.79638671875 PEAK HCD FTMS 0 0 0 1559 1376.432861328125 0.779894440674529 -1 0.008050918579101562 1 Unmodified _NPSFVPVWY_ REV__ENST00000228928.11_1_12:113408693-113408756:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90401.1 NaN 459 1099 1559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1561 20.655 NaN 32132 35 0 10670 0.261 + 22578 QSSHSLPRL 9 20 512.7801656956696 1023.5457784581391 2 512.7799072265625 MULTI HCD FTMS 0 0 0 1559 1639.7462158203125 0.15709165971615727 -4 0.03411865234375 2 Unmodified _QSSHSLPRL_ REV__ENST00000468403.1_1_1:153750510-153750957:+|nuORF;REV__ENST00000531251.1_1_1:153750510-153751163:+|nuORF 1.6526216038709556 0.33848895094777925 2 C 1 -1 4.6041 0 0 0.44982 0 0 408.60035717083286 508.9178560846313 917.5182132554642 0 0 0 0 0 0 0 0 0 C 0.44982 - 2 + NaN NaN 86832.5 NaN 460 1099 1559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1564 20.669 NaN 36112 35 0 4902.6 0.327 -1 TMYETEEM 8 22 533.1908932696548 NaN 0 533.1911010742188 PEAK HCD FTMS 0 0 0 1563 13292.9638671875 0.6080599601303354 337 -3.375659942626953 1 2 Oxidation (M) _TM(Oxidation (M))YETEEM(Oxidation (M))_ ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88300.4 NaN 461 1101 1563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1565 20.673 NaN 20408 35 0 6880.1 0.261 -1 MPSLQPVVMC 10 12 589.274412171083 1176.5342714089659 2 589.274658203125 MULTI HCD FTMS 0 0 0 1563 7200.02685546875 1 0 0 2 Carbamidomethyl (C),Oxidation (M) _MPSLQPVVM(Oxidation (M))C(Carbamidomethyl (C))_ ENSG00000188986|ENST00000343053|NELFB;nc|ENSG00000188986|Q8WX92|NELFB 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91219.6 NaN 462 1101 1563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1566 20.676 NaN 14668 35 0 3713.9 0.261 -1 NCERLCLPLP 10 15 636.3171997070312 NaN 0 636.3171997070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _NC(Carbamidomethyl (C))ERLC(Carbamidomethyl (C))LPLP_ ENST00000368489.3_1_1:154321714-154321933:+|nuORF 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103044.1 NaN 463 1101 1563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1569 20.689 NaN 24905 35 0 3754 0.411 + -1 ECPNNCQQ 8 22 525.1925263661145 NaN 0 525.1926879882812 PEAK HCD FTMS 0 0 0 1568 4680.09765625 0.622565596353426 10 -0.0860748291015625 1 2 Carbamidomethyl (C) _EC(Carbamidomethyl (C))PNNC(Carbamidomethyl (C))QQ_ REV__ENSG00000081479|ENST00000649046|LRP2 0.6014990680409731 0.38822285293237185 2 M 1 -1 3.9794 0 0 0.37958 0 0 349.77584755469144 564.5435274713499 914.3193750260414 0 0 0 0 0 0 0 0 0 M 0.37958 - 1 + NaN NaN 90460.3 NaN 464 1103 1568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1573 20.712 NaN 52603 35 0 8065.3 0.411 -1 NSSKDVAVM 9 34 483.7317012660727 965.4488495989455 2 483.7315979003906 MULTI HCD FTMS 0 0 0 1572 32335.02734375 0.3777363382729142 -21 0.1802997589111328 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 36.506200033944 0.08138327636155518 2 [NS]S[WR]AV{M(Oxidation (M))|F} 8 -1 [NS] + + 41.387 5.2288 2.6004 4.2869 4.2869 61.295 0 0 0 0 41.38743756437101 0 0 0 1.9247425010840047 0 0 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.2869 - 21 + NaN NaN 101007.8 NaN 465 1106 1572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1575 20.72 NaN 41685 35 0 4778.3 0.327 -1 0 29 493.7304249993843 985.4462970655686 2 493.7305603027344 MULTI HCD FTMS 0 0 0 1574 19642.751953125 0.2902006761613032 10 -0.09429740905761719 1 NaN NaN 2 S{I|L} 2 -1 27.206 0 0 2.7608 0 0 767.3177357404312 0 767.3177357404312 0 24.10728139283883 0 0 0 0.4247425010840047 0 0.5 0 S{I|L} 2.7608 - 3 NaN NaN 89638.2 NaN 466 1107 1574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1576 20.725 NaN 47949 35 0 8216.3 0.261 + -1 HGMSVLNRY 9 21 546.7663053921995 1091.5180578511988 2 546.7664794921875 MULTI HCD FTMS 0 0 0 1574 8059.4013671875 0.3594669185064052 -10 0.08521270751953125 2 Oxidation (M) _HGM(Oxidation (M))SVLNRY_ REV__ENSG00000168661|ENST00000601142|ZNF30;REV__nc|ENSG00000168661|P17039-3|ZNF30 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101274.2 NaN 467 1107 1574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1578 20.73 NaN 68908 35 0 5824.1 0.327 + 31415 VYAQKHQQL 9 39 557.8037860948195 1113.593019256439 2 557.8037719726562 MULTI HCD FTMS 0 0 0 1577 35467.0390625 0.6885488126168855 1 -0.009916305541992188 1 Unmodified _VYAQKHQQL_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 26.88365393820708 0.12808753336095696 2 [YV]A 3 6 30.942 0 0 2.7786 0 0 0 777.4025950223171 777.4025950223171 9.744237387763093 0 0 0 0 0.5 2 0 0 + [YV]A 2.7786 + + 41 NaN NaN 108761.1 NaN 468 1108 1577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1579 20.735 NaN 31488 35 0 11216 0.261 + 26465 STSLASSFVTS 11 13 543.7693963819677 NaN 0 543.7693481445312 PEAK HCD FTMS 0 0 0 1577 7982.5478515625 0.8442847965031007 1 -0.009916305541992188 2 Unmodified _STSLASSFVTS_ REV__ENSG00000067445|ENST00000173898|TRO;REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF;REV__nc|ENSG00000067445|Q12816-3|TRO;REV__nc|ENSG00000067445|Q12816-4|TRO 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95614.9 NaN 469 1108 1577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1581 20.74 NaN 144910 35 0 14292 0.411 + 25432 SESAQSKML 9 56 498.7369403668236 995.4593278004472 2 498.7369384765625 MULTI HCD FTMS 0 0 0 1580 119810.1875 0.912593123666134 9 -0.08240699768066406 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 121.5340881639634 0.001118397630175091 2 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 0 + 81.22 0 0 8.1591 8.1591 93.649 0 0 0 2.8867301246356902 71.7563686351756 2.8867301246356902 11.817496819840656 0 2.8182503180159344 0 2.416386562212267 0 + + {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L};{[MG]|[TS]}DAQSK{M(Oxidation (M))|F}{I|L} 8.1591;6.9719 +;- + 155 NaN NaN 122377.3 NaN 470 1109 1580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1583 20.748 NaN 70159 35 0 13964 0.327 -1 HPYQPDPKM 9 26 564.7607268794001 1127.5069008256 2 564.7606811523438 MULTI HCD FTMS 0 0 0 1582 28242.755859375 0.3101811103762631 15 -0.14272308349609375 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 10.073929032068715 0.27331982688540024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 92980.9 NaN 471 1110 1582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1584 20.753 NaN 29063 35 0 9660.2 0.261 + -1 PVMRCWLC 8 16 553.7524403232504 NaN 0 553.7518920898438 PEAK HCD FTMS 0 0 0 1582 3514.10400390625 1 0 0 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))PVMRC(Carbamidomethyl (C))WLC_ REV__ENST00000318037.3_1_3:196199473-196199509:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91571.2 NaN 472 1110 1582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1587 20.766 NaN 32454 35 0 5855.8 0.327 -1 YCYMDICKYY 10 19 479.8552701116126 NaN 0 479.8548583984375 PEAK HCD FTMS 0 0 0 1586 7195.974609375 0.5403714491886374 135 -1.2424144744873047 1 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))YM(Oxidation (M))DICKYY_ ENST00000475465.1_1_X:77158242-77158278:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111192.5 NaN 473 1112 1586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1588 20.77 NaN 20685 35 0 3797.6 0.261 + -1 VSRYMVMML 9 16 589.274412171083 1176.5342714089659 2 589.2730712890625 MULTI HCD FTMS 0 0 0 1586 4796.05712890625 0.6661165611157999 10 -0.09725570678710938 2 3 Oxidation (M) _VSRYM(Oxidation (M))VM(Oxidation (M))M(Oxidation (M))L_ REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85215.6 NaN 474 1112 1586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1590 20.776 NaN 77806 35 0 7766 0.327 + 14136 LADKERVAA 9 26 486.77723932020444 971.5399257072089 2 486.7770690917969 MULTI HCD FTMS 0 0 0 1589 63127.75 0.5845968902536606 -6 0.055454254150390625 1 Unmodified _LADKERVAA_ ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF 26.268140514670165 0.13340543277302316 2 {I|L}ADKE 5 4 66.498 0 0 6.8446 0 0 0 412.23188196353755 412.23188196353755 44.27948461635836 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3807196863200844 0 + {I|L}ADKE 6.8446 + + 38 + NaN NaN 103397.5 NaN 475 1113 1589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1591 20.78 NaN 28431 35 0 5944.2 0.261 + -1 LVMYQWKV 8 20 541.788649840203 1081.562746747206 2 541.7884521484375 MULTI HCD FTMS 0 0 0 1589 1742.004150390625 0.18981863282999142 5 -0.04688835144042969 2 Oxidation (M) _LVM(Oxidation (M))YQWKV_ REV__ENSG00000128908|ENST00000648947|INO80;REV__INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85938.9 NaN 476 1113 1589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1592 20.784 NaN 23976 35 0 5065.2 0.261 + -1 CYLSRQVDH 9 18 589.274412171083 1176.5342714089659 2 589.2752685546875 MULTI HCD FTMS 0 0 0 1589 5285.6044921875 0.7341089968536494 11 -0.10721206665039062 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLSRQVDH_ REV__ENSG00000165194|ENST00000373034|PCDH19;REV__nc|ENSG00000165194|Q8TAB3-2|PCDH19;REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82649.5 NaN 477 1113 1589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1594 20.789 NaN 13194 35 0 2282.8 0.411 + -1 SWKEQFCCC 9 20 624.2361900225741 NaN 0 624.2352294921875 PEAK HCD FTMS 0 0 0 1593 9756.318359375 0.884933811570758 75 -0.6873550415039062 1 2 Carbamidomethyl (C) _SWKEQFCC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000532470.2_1_11:36657661-36669604:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93891.2 NaN 478 1114 1593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1597 20.804 NaN 20440 35 0 6120.4 0.327 + 1972 DALQHSDRL 9 12 527.7673065312509 1053.5200601293018 2 527.7677612304688 MULTI HCD FTMS 0 0 0 1596 5874.7314453125 0.14903213374818483 -14 0.1226959228515625 1 Unmodified _DALQHSDRL_ KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102983.6 NaN 479 1116 1596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1598 20.809 NaN 81296 35 0 11400 0.263 -1 0 38 400.3500333053876 NaN 0 400.34967041015625 PEAK HCD FTMS 0 0 0 1596 1124.85107421875 0.5648364344196677 1 -0.009943008422851562 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124766.5 NaN 480 1116 1596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1600 20.814 NaN 26577 35 0 5262.3 0.411 + 12615 KVNSISPGSPA 11 24 528.78975422343 NaN 0 528.7901000976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KVNSISPGSPA_ ENSG00000110801|ENST00000541212|PSMD9;ENST00000544724.5_1_12:122337523-122354214:+|nuORF;nc|ENSG00000256950|O00233-2|PSMD9 2.9952420565917617 0.33362350433860827 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91204 NaN 481 1117 1599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1602 20.823 NaN 21259 35 0 4515 0.412 -1 TRDQEEKM 8 20 526.7373310233248 NaN 0 526.7372436523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _TRDQEEKM(Oxidation (M))_ ENSG00000174450|ENST00000567107|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86097.8 NaN 482 1118 1601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1604 20.831 NaN 97422 35 0 19258 0.327 + 19562 NSSKDVAVM 9 35 483.7317012660727 965.4488495989455 2 483.7315673828125 MULTI HCD FTMS 0 0 0 1603 67367.5703125 0.7869849330158518 -8 0.07254219055175781 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 43.77239144664712 0.04802738721622131 2 [NS]S[WR]AV{M(Oxidation (M))|F} 8 3 [NS] + + 42.396 8.4814 4.218 4.3913 4.3913 61.435 0 0 0 0 42.39577516576787 0 0 0 1.8494850021680094 0 0 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.3913 - 22 + NaN NaN 111886.1 NaN 483 1119 1603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1605 20.835 NaN 26255 35 0 4666 0.261 -1 LLFCFMFR 8 17 559.7790121287818 NaN 0 559.7793579101562 PEAK HCD FTMS 0 0 0 1603 10216.283203125 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLFCFMFR_ ENST00000473824.1_1_10:60124507-60124564:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103085.2 NaN 484 1119 1603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1606 20.838 NaN 21362 35 0 5949.9 0.261 -1 SCRCCCGWGP 10 23 621.7166781490316 1241.4188033648632 2 621.7162475585938 MULTI HCD FTMS 0 0 0 1603 6824.6015625 0.4488162108870874 -6 0.055011749267578125 3 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))CGWGP_ ENST00000474359.6_1_12:58016417-58018310:+|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89656.3 NaN 485 1119 1603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1607 20.842 NaN 15764 35 0 4479.3 0.261 + -1 VSRYMVMML 9 9 589.274412171083 1176.5342714089659 2 589.2745971679688 MULTI HCD FTMS 0 0 0 1603 3612.193603515625 0.5016916847708698 17 -0.15096282958984375 4 3 Oxidation (M) _VSRYM(Oxidation (M))VM(Oxidation (M))M(Oxidation (M))L_ REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81749.6 NaN 486 1119 1603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1610 20.855 NaN 43495 35 0 7710.2 0.411 -1 MVFHTGTQR 9 37 546.7663053921995 1091.5180578511988 2 546.7666625976562 MULTI HCD FTMS 0 0 0 1609 10757.1396484375 0.47979194299840633 4 -0.03596687316894531 1 Oxidation (M) _M(Oxidation (M))VFHTGTQR_ chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000527422.5_1_6:26365529-26368244:+|nuORF;ENST00000530653.5_1_6:26365433-26368244:+|nuORF;ENST00000532865.5_2_6:26365529-26368244:+|nuORF 8.155526934196011 0.2891920862272901 2 TH{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 5 -1 18.188 0 0 1.6663 0 0 460.23994643379064 0 460.23994643379064 0 15.713337517843655 0 0 0 0.3494850021680094 0 0 0 TH{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 1.6663 - 7 NaN NaN 90765.3 NaN 487 1121 1609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1612 20.863 NaN 90213 35 0 8439.8 0.327 -1 SESAQSKML 9 30 498.7369403668236 995.4593278004472 2 498.7368469238281 MULTI HCD FTMS 0 0 0 1611 70223.3515625 0.5348906390512657 22 -0.1898174285888672 1 Oxidation (M) _SESAQSKM(Oxidation (M))L_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 32.037481411007896 0.10189719824197178 2 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 9 -1 {[ES]|[DT]|[{I|L}C]} + + 39.486 5.2288 2.4199 3.9666 3.9666 60.917 0 0 0 0 39.48592905994943 0 0 0 1.7302046884880937 0 0 0 {[ES]|[DT]|[{I|L}C]}SAQSK{M(Oxidation (M))|F}{I|L} 3.9666 + + 43 + NaN NaN 96888 NaN 488 1122 1611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1613 20.867 NaN 32844 35 0 8964.8 0.261 + -1 NCEECCYYRKD 11 12 513.860396964274 NaN 0 513.7337646484375 PEAK HCD FTMS 0 0 0 1611 4625.57177734375 0.7008206696419258 14 -0.11864089965820312 2 2 Carbamidomethyl (C) _NC(Carbamidomethyl (C))EECC(Carbamidomethyl (C))YYRKD_ REV__ENSG00000122482|ENST00000337393|ZNF644;REV__nc|ENSG00000122482|Q9H582-2|ZNF644;REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98985.2 NaN 489 1122 1611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1615 20.873 NaN 30603 35 0 5526.3 0.327 -1 TPNEERNVM 9 18 553.2505106151415 1104.4864682970829 2 553.2509155273438 MULTI HCD FTMS 0 0 0 1614 25679.267578125 0.8884022087169845 -9 0.08400344848632812 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 2.9952420565917617 0.3283108881486655 2 [TP]N 3 -1 7.4473 0 0 0.67427 0 0 0 789.3153780572874 789.3153780572874 7.447274948966937 0 0 0 0 0 0 0 0 [TP]N 0.67427 + + 1 + NaN NaN 105946.9 NaN 490 1123 1614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1616 20.877 NaN 12871 35 0 3516.5 0.261 + 32434 WCLHPPRRC 9 11 584.2869313507151 1166.5593097682302 2 584.7899169921875 MULTI HCD FTMS 0 0 0 1614 7366.38134765625 0.7191700285315981 -6 0.058414459228515625 2 Unmodified _WCLHPPRRC_ ENST00000399151.3_1_21:37642452-37650333:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92824.7 NaN 491 1123 1614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1618 20.883 NaN 35082 35 0 5165.1 0.411 -1 TLCFCLLCR 9 34 564.7724364161944 NaN 0 564.7603149414062 PEAK HCD FTMS 0 0 0 1617 1582.218505859375 0.43987776103468723 3 -0.026067733764648438 1 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))FCLLCR_ L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|93|1|anti-sense 2.0597508629832335 0.2852655770354268 2 NE 2 -1 7.4743 0 0 0.66289 0 0 563.6672350376638 317.7594088190063 881.4266438566701 0 0 0 0 0 0 0 0 0 NE 0.66289 - 5 + NaN NaN 98606.4 NaN 492 1124 1617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1620 20.891 NaN 38227 35 0 5120.9 0.411 -1 RVDSSADPTM 10 24 547.7427810422886 1093.471009151377 2 547.7433471679688 MULTI HCD FTMS 0 0 0 1619 9073.76953125 0.679915379566258 3 -0.02605438232421875 1 Oxidation (M) _RVDSSADPTM(Oxidation (M))_ ENSG00000143633|ENST00000366649|C1orf131;ENST00000471936.1_1_1:231374554-231376902:-|nuORF;nc|nan|Q8NDD1-5|C1orf131;nc|nan|Q8NDD1-6|C1orf131;nc|nan|Q8NDD1-7|C1orf131 7.101721422024254 0.4377131641736035 2 TD[TP]{M(Oxidation (M))|F} 5 -1 28.456 0 0 2.6023 0 0 514.259569236525 0 514.259569236525 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 TD[TP]{M(Oxidation (M))|F} 2.6023 - 6 NaN NaN 98684.9 NaN 493 1125 1619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1622 20.899 NaN 63110 35 0 5234.3 0.327 + 14137 LADKERVAA 9 46 486.77723932020444 971.5399257072089 2 486.7771301269531 MULTI HCD FTMS 0 0 0 1621 40830.328125 0.3781107809150742 7 -0.056629180908203125 1 Unmodified _LADKERVAA_ ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF 27.223235318498237 0.1251536255799991 2 {I|L}ADKE 5 4 64.24 0 0 6.6122 0 0 0 412.2319735162719 412.2319735162719 48.75569708000178 0 0 0 0 1.2302046884880937 1.6989700043360187 0 0 + {I|L}ADKE 6.6122 + + 46 + NaN NaN 101773.5 NaN 494 1126 1621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1623 20.903 NaN 37753 35 0 10937 0.261 + -1 CWGEHTYF 8 21 550.217190783436 NaN 0 550.2169799804688 PEAK HCD FTMS 0 0 0 1621 9025.8388671875 0.6467449672976864 11 -0.09068107604980469 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83777.4 NaN 495 1126 1621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1625 20.909 NaN 19058 35 0 3869.3 0.411 + 5118 FEQICLFMF 9 24 589.2743274125206 1176.5341018918411 2 589.27587890625 MULTI HCD FTMS 0 0 0 1624 4129.9921875 0.5901385149164757 -3 0.026067733764648438 1 Unmodified _FEQICLFMF_ ENST00000374794.7_2_10:34759149-34806035:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119336.1 NaN 496 1127 1624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1628 20.924 NaN 80093 35 0 29088 0.412 + 4218 EVAQPGPSNR 10 37 527.7673065312509 1053.5200601293018 2 527.7675170898438 MULTI HCD FTMS 0 0 0 1627 38542.8515625 0.9777678286353364 -1 0.0075511932373046875 1 Unmodified _EVAQPGPSNR_ ENSG00000142798|ENST00000374695|HSPG2 27.223235318498237 0.2564750587861972 2 {NN|[MP]|[D{I|L}]|[EV]}AQ[QA]EV 8 6 47.114 0 0 4.4721 0 0 0 196.0725496881469 196.0725496881469 40.12456261857125 0 0 0 0 0.75 1.5228787452803376 0.5 0 {NN|[MP]|[D{I|L}]|[EV]}AQ[QA]EV 4.4721 - 72 + NaN NaN 106133.2 NaN 497 1129 1627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1631 20.94 NaN 70035 35 0 14685 0.411 -1 0 36 400.3500782760027 NaN 0 400.3503112792969 PEAK HCD FTMS 0 0 0 1630 1849.3568115234375 0.9479156460102706 -1 0.007549285888671875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103263.8 NaN 498 1131 1630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1634 20.956 NaN 116770 35 0 36476 0.327 -1 NAAHQEALM 9 21 500.72938102289663 999.4442091125933 2 500.7293395996094 MULTI HCD FTMS 0 0 0 1633 102467.65625 0.28010285753239134 -22 0.19751739501953125 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 27.628801355627647 0.12213550946336599 2 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2774743487246 0 650.2774743487246 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 31 + NaN NaN 104999 NaN 499 1133 1633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1635 20.96 NaN 106620 35 0 17573 0.261 + 19563 NSSKDVAVM 9 33 483.7317012660727 965.4488495989455 2 483.7315673828125 MULTI HCD FTMS 0 0 0 1633 60133.71875 0.7024794037092033 6 -0.05551719665527344 2 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 40.23920728925047 0.06424668180817725 2 VAV{M(Oxidation (M))|F} 4 5 43.928 0 0 4.55 0 0 531.2299671857437 0 531.2299671857437 0 29.222900387074517 0 0 0 1.5 0 0 0 + VAV{M(Oxidation (M))|F} 4.55 + + 25 NaN NaN 101313.9 NaN 500 1133 1633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1637 20.966 NaN 175120 35 0 26823 0.411 + 4286 EVLQGGSQR 9 53 487.2567557872667 972.4989586413334 2 487.2566833496094 MULTI HCD FTMS 0 0 0 1636 49976.6171875 0.6449794049438822 -4 0.03298187255859375 1 Unmodified _EVLQGGSQR_ ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1 47.594388314883695 0.03493607795751234 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QNSQR 8 2 + 52.829 0 0 5.4323 5.4323 83.22 0 0 0 31.40215041192178 14.024174299985006 14.024174299985006 0.5115252244738144 0 0.6989700043360187 0 0 0.8494850021680094 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QNSQR;{NN|[MP]|[D{I|L}]|[EV]}{I|L}QGGSQR;{NN|[MP]|[D{I|L}]|[EV]}{I|L}QNS[AG]R;{NN|[MP]|[D{I|L}]|[EV]}{I|L}[AG]NSQR;{NN|[MP]|[D{I|L}]|[EV]}{I|L}[AG]GGSQR;{NN|[MP]|[D{I|L}]|[EV]}{I|L}QGGS[AG]R;{NN|[MP]|[D{I|L}]|[EV]}{I|L}[AG]NS[AG]R;{NN|[MP]|[D{I|L}]|[EV]}{I|L}[AG]GGS[AG]R;{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}QR 5.4323;5.3797;4.4799;4.4799;4.4328;4.4328;3.533;3.4904;0.65277 -;+;-;-;-;-;-;-;- + 159 + NaN NaN 140508.4 NaN 501 1134 1636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1639 20.974 NaN 37832 35 0 6965.1 0.411 -1 MVFHTGTQR 9 27 546.7663164231336 1091.5180799130671 2 546.765869140625 MULTI HCD FTMS 0 0 0 1638 4969.97802734375 0.3427162969818788 -23 0.20786094665527344 1 Oxidation (M) _M(Oxidation (M))VFHTGTQR_ chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000527422.5_1_6:26365529-26368244:+|nuORF;ENST00000530653.5_1_6:26365433-26368244:+|nuORF;ENST00000532865.5_2_6:26365529-26368244:+|nuORF 1.4819007175156935 0.3397831423917744 2 H 1 -1 2.7642 0 0 0.25324 0 0 393.1734887038859 558.2663668268186 951.4398555307046 0 0 0 0 0 0 0 0 0 H 0.25324 + + 1 + NaN NaN 95254.8 NaN 502 1135 1638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1641 20.982 NaN 34883 35 0 5053.8 0.411 + 2480 DRRRRFAL 8 30 545.3223072422015 1088.630061551203 2 545.3221435546875 MULTI HCD FTMS 0 0 0 1640 5247.5390625 0.43765389922284076 -5 0.04152107238769531 1 Unmodified _DRRRRFAL_ REV__ENSG00000085552|ENST00000368094|IGSF9;REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF;REV__ENST00000496645.5_1_1:159897137-159899822:-|nuORF;REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98109.4 NaN 503 1136 1640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1643 20.99 NaN 147990 35 0 27728 0.327 -1 0 37 465.2195690622318 928.4245851912636 2 465.21942138671875 MULTI HCD FTMS 0 0 0 1642 67343.9765625 0.08067884901956997 -14 0.11678123474121094 1 NaN NaN 2 AYY 3 -1 10.458 0 0 1.1264 0 0 513.2536404164562 0 513.2536404164562 0 0.636955994924266 0 0 0 0 0 0 0 AYY 1.1264 - 14 NaN NaN 109609.5 NaN 504 1137 1642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1644 20.994 NaN 40454 35 0 4944.7 0.261 + 27847 TDGERITY 8 35 477.7297636648804 953.4449743965608 2 477.7298278808594 MULTI HCD FTMS 0 0 0 1642 13059.171875 0.6717693154264401 -1 0.00806427001953125 2 Unmodified _TDGERITY_ REV__ENSG00000112139|ENST00000434837|MDGA1;REV__nc|ENSG00000112139|Q8NFP4-2|MDGA1 7.289230182591677 0.5311777711368266 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100553.8 NaN 505 1137 1642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1645 20.998 NaN 12321 35 0 3744.1 0.261 + 16565 LVAHERHER 9 9 573.8095364920003 1145.6045200508006 2 574.3104248046875 MULTI HCD FTMS 0 0 0 1642 1890.0380859375 0.3683698531163946 1 -0.01325225830078125 3 Unmodified _LVAHERHER_ REV__ENSG00000146054|ENST00000274773|TRIM7;REV__nc|ENSG00000146054|Q9C029-1|TRIM7 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105815.5 NaN 506 1137 1642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1647 21.003 NaN 45618 35 0 5968.6 0.411 -1 TPNEERNVM 9 38 553.2505106151415 1104.4864682970829 2 553.25048828125 MULTI HCD FTMS 0 0 0 1646 24156.755859375 0.8357292588511085 6 -0.04986000061035156 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 21.590151480376914 0.17382222009858564 2 TPNEEV 6 -1 34.658 0 0 3.138 0 0 0 432.1540621393188 432.1540621393188 10.194386230930078 0 0 0 0 0.28872548999643577 0 0 0 TPNEEV 3.138 - 27 + NaN NaN 106555.7 NaN 507 1138 1646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1649 21.011 NaN 11274 35 0 1959.8 0.411 + 32435 WCLHPPRRC 9 18 584.2869313507151 1166.5593097682302 2 584.7901000976562 MULTI HCD FTMS 0 0 0 1648 5675.26123046875 0.5540682172718469 10 -0.09044837951660156 1 Unmodified _WCLHPPRRC_ ENST00000399151.3_1_21:37642452-37650333:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93747.4 NaN 508 1139 1648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1652 21.027 NaN 13002 35 0 2307.7 0.411 -1 WPAYFKVPC 9 20 584.2869313507151 1166.5593097682302 2 584.7888793945312 MULTI HCD FTMS 0 0 0 1651 5395.6572265625 0.5267708496802566 12 -0.1084442138671875 1 Carbamidomethyl (C) _WPAYFKVPC(Carbamidomethyl (C))_ ENSG00000173068|ENST00000380672|BNC2;nc|ENSG00000173068|Q6ZN30-2|BNC2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92220.5 NaN 509 1141 1651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1654 21.035 NaN 11679 35 0 2294.2 0.411 + 5431 FHYFPFSLF 9 20 602.7932859731108 NaN 0 602.7935180664062 PEAK HCD FTMS 0 0 0 1653 2061.399658203125 0.43388302686834496 1 -0.00804901123046875 1 Unmodified _FHYFPFSLF_ ENST00000523301.1_1_5:158533944-158534133:+|nuORF 0.6014990680409731 0.29233206172879045 2 D 1 9 9.2917 0 0 0.77201 0 0 468.7520249718089 616.7719820611936 1085.5240070330026 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.77201 - 2 + NaN NaN 100122.6 NaN 510 1142 1653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1656 21.043 NaN 24915 35 0 5740 0.327 + -1 ADQPMKDLM 9 15 532.7429970848808 NaN 0 532.7432250976562 PEAK HCD FTMS 0 0 0 1655 10991.2060546875 0.8310829595427454 1 -0.00995635986328125 1 Oxidation (M) _ADQPMKDLM(Oxidation (M))_ REV__ENSG00000196074|ENST00000357552|SYCP2 2.9952420565917617 0.2807323172627736 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104836.8 NaN 511 1143 1655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1657 21.047 NaN 52556 35 0 10117 0.261 + 26181 SPPQINRDQ 9 23 527.7673065312509 1053.5200601293018 2 527.7673950195312 MULTI HCD FTMS 0 0 0 1655 16153.576171875 0.40978927240652907 13 -0.11524391174316406 2 Unmodified _SPPQINRDQ_ REV__ENSG00000150275|ENST00000644397|PCDH15;REV__nc|ENSG00000150275|Q96QU1-3|PCDH15;REV__nc|ENSG00000150275|Q96QU1-4|PCDH15;REV__nc|ENSG00000150275|Q96QU1-6|PCDH15;REV__nc|ENSG00000150275|Q96QU1|PCDH15;REV__PCDH15|p.I385Tfs*32|1|0.2|ENSG00000150275|chr10:54195822-54195834|TTTTCATCCAGTA/-|frameshift_variant 1.6526216038709556 0.33848895094777925 2 Q 1 -1 6.9897 0 0 0.66346 0 0 644.3221669181675 278.11457239322505 922.4367393113926 0 0 0 0 0 0 0 0 0 Q 0.66346 + + 2 + NaN NaN 88760.2 NaN 512 1143 1655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1659 21.053 NaN 28476 35 0 5044.8 0.327 -1 CEWGKEYQ 8 14 550.2277840700516 NaN 0 550.2169799804688 PEAK HCD FTMS 0 0 0 1658 4206.7119140625 1 0 0 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))EWGKEYQ_ tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85695.1 NaN 513 1144 1658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1660 21.057 NaN 20383 35 0 2394.5 0.261 -1 WLLLWKQC 8 24 573.8095364920003 1145.6045200508006 2 573.8096923828125 MULTI HCD FTMS 0 0 0 1658 5841.19091796875 0.8453108012447228 -2 0.01800537109375 2 Carbamidomethyl (C) _WLLLWKQC(Carbamidomethyl (C))_ ENST00000579408.5_2_18:47018090-47018201:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91291.8 NaN 514 1144 1658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1663 21.07 NaN 43887 35 0 6214.5 0.411 -1 0 37 527.1850834558581 1052.3556139785162 2 527.185546875 MULTI HCD FTMS 0 0 0 1662 9898.1259765625 0.6339949456452322 -3 0.027345657348632812 1 NaN NaN 2 Q 1 -1 6.9897 0 0 0.6642 0 0 643.1590940583975 278.11579309635005 921.2748871547476 0 0 0 0 0 0 0 0 0 Q 0.6642 - 9 + NaN NaN 106058 NaN 515 1146 1662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1665 21.078 NaN 450620 35 0 117720 0.327 + 18760 NAAHQEALM 9 64 500.72938102289663 999.4442091125933 2 500.7294616699219 MULTI HCD FTMS 0 0 0 1664 312901.78125 0.8553399800739585 -8 0.06704330444335938 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 74.19965305603844 0.007729275404663812 2 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 80.84 0 0 8.0884 8.0884 92.172 0 0 0 2.5544784272280054 2.5544784272280054 2.5544784272280054 9.208187539523749 0 3.0138793319624577 1.154901959985743 0 0.7302046884880937 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F};QQHQEA{I|L}{M(Oxidation (M))|F};QQH[AG]EA{I|L}{M(Oxidation (M))|F} 8.0884;7.1671;6.3371;5.4104 +;-;-;- + 456 NaN NaN 151884.5 NaN 516 1147 1664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1666 21.083 NaN 70231 35 0 12348 0.261 -1 NSSKDVAVM 9 33 483.7317012660727 965.4488495989455 2 483.7314147949219 MULTI HCD FTMS 0 0 0 1664 42930.5 0.5015121743312765 20 -0.17259597778320312 2 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 36.506200033944 0.08138327636155518 2 [NS]S[WR]AV{M(Oxidation (M))|F} 8 -1 [NS] + + 41.387 5.2288 2.6004 4.2869 4.2869 61.295 0 0 0 0 41.38743756437101 0 0 0 1.9247425010840047 0 0 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.2869 - 26 + NaN NaN 93937.1 NaN 517 1147 1664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1667 21.086 NaN 38053 35 0 11432 0.261 -1 YCILCYTS 8 29 511.7204845083645 NaN 0 511.7205505371094 PEAK HCD FTMS 0 0 0 1664 3763.236328125 0.37373439073419373 4 -0.04139518737792969 3 Carbamidomethyl (C) _YCILC(Carbamidomethyl (C))YTS_ ENST00000552941.5_3_14:65528035-65528353:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94818.2 NaN 518 1147 1664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1669 21.092 NaN 141170 35 0 45311 0.326 + 4287 EVLQGGSQR 9 34 487.2567557872667 972.4989586413334 2 487.2565002441406 MULTI HCD FTMS 0 0 0 1668 33042.4921875 0.42643396348736967 10 -0.08222198486328125 1 Unmodified _EVLQGGSQR_ ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1 8.155526934196011 0.2891920862272901 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}QG 5 4 32.307 0 0 3.3221 0 0 0 443.19968591861567 443.19968591861567 28.327731244245342 0 0 0 0 0 1.6989700043360187 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}QG 3.3221 + + 13 + NaN NaN 132146.6 NaN 519 1148 1668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1670 21.096 NaN 81619 35 0 11177 0.261 -1 0 34 400.3507995605469 NaN 0 400.3507995605469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100276.2 NaN 520 1148 1668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1672 21.102 NaN 37648 35 0 5804.8 0.327 + 21925 QEAVERSM 8 23 475.2239495703555 948.433346207511 2 475.22344970703125 MULTI HCD FTMS 0 0 0 1671 17976.162109375 0.06836820070379514 -45 0.40399169921875 1 Unmodified _QEAVERSM_ REV__ENSG00000072134|ENST00000314728|EPN2;REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF;REV__EPN2|p.T470Nfs*19|1|0.3|ENSG00000072134|chr17:19329636-19329637|-/A|frameshift_variant;REV__nc|ENSG00000072134|O95208-2|EPN2;REV__nc|ENSG00000072134|O95208-3|EPN2 4.3292370932331545 0.5355693454741696 2 VE[Y{M(Oxidation (M))|F}] 4 -1 13.188 0 0 1.3905 0 0 392.18391616035314 0 392.18391616035314 0 9.208187539523749 0 0 0 0 0 0 0 VE[Y{M(Oxidation (M))|F}] 1.3905 - 5 NaN NaN 95029.7 NaN 521 1149 1671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1673 21.106 NaN 50208 35 0 8773.6 0.261 + -1 VMFCLFLF 8 18 546.7663164231336 1091.5180799130671 2 546.76611328125 MULTI HCD FTMS 0 0 0 1671 13575.115234375 0.9361033788541343 -9 0.08241081237792969 2 Carbamidomethyl (C),Oxidation (M) _VM(Oxidation (M))FC(Carbamidomethyl (C))LFLF_ REV__ENSG00000116729|ENST00000262348|WLS;REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF;REV__nc|ENSG00000116729|Q5T9L3-2|WLS;REV__nc|ENSG00000116729|Q5T9L3-3|WLS 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 3 -1 10.458 0 0 0.95808 0 0 698.3452625959 0 698.3452625959 0 8.863781092484688 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]} 0.95808 - 2 NaN NaN 103040.4 NaN 522 1149 1671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1675 21.112 NaN 1231800 35 0 250330 0.411 -1 0 90 465.2195690622318 928.4245851912636 2 465.21954345703125 MULTI HCD FTMS 0 0 0 1674 833345.5 0.9983573766725923 -1 0.00994873046875 1 NaN NaN 2 [AG]SEA[SG]HT{I|L} 10 -1 [AG] + + 40.295 -0.57805 -0.45139 4.3402 4.3402 61.37 0 0 0 0 10.769796716584857 0 0 0 1.1747425010840047 0 1.9698565171985374 0 [AG]SEA[SG]HT{I|L} 4.3402 - 741 + NaN NaN 466119.5 NaN 523 1150 1674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1678 21.127 NaN 37749 35 0 3841.6 0.411 -1 TPNEERNVM 9 33 553.2505106151415 1104.4864682970829 2 553.2509155273438 MULTI HCD FTMS 0 0 0 1677 17055.056640625 0.5900382455701972 20 -0.179107666015625 1 Oxidation (M) _TPNEERNVM(Oxidation (M))_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 14.405379775768559 0.2358970535022398 2 T[NP]EE 5 -1 21.026 0 0 1.9037 0 0 0 531.2371309869749 531.2371309869749 17.926740567922437 0 0 0 0 0.3807196863200844 0 0 0 T[NP]EE 1.9037 + + 8 + NaN NaN 95224.5 NaN 524 1152 1677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1682 21.15 NaN 84306 35 0 9934.7 0.411 + 21157 PPPLAPKS 8 43 403.7422741366926 805.4699953401852 2 404.2437438964844 MULTI HCD FTMS 0 0 0 1681 15766.103515625 0.24017879447472243 -12 0.10725784301757812 1 Unmodified _PPPLAPKS_ REV__ENSG00000173083|ENST00000311412|HPSE;REV__nc|ENSG00000173083|Q9Y251-2|HPSE;REV__nc|ENSG00000173083|Q9Y251-3|HPSE;REV__nc|ENSG00000173083|Q9Y251-4|HPSE 7.910154910731844 0.5302565402355366 2 KY 2 -1 25.969 0 0 3.2241 0 0 0 511.2879845993078 511.2879845993078 20.48455006504028 0 0 0 0 0.5 0 0 0 KY 3.2241 - 9 + NaN NaN 110370.2 NaN 525 1155 1681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1685 21.166 NaN 97643 35 0 13888 0.411 + 21158 PPPLPGKT 8 46 403.7422741366926 805.4699953401852 2 403.7420654296875 MULTI HCD FTMS 0 0 0 1684 38544.578125 0.27511962896451825 -9 0.07424354553222656 1 Unmodified _PPPLPGKT_ ENST00000588673.3_1_19:2270553-2271441:+|nuORF 25.399314129420986 0.40691472774782006 2 KY{I|L}PGTK 7 5 + 60.038 0 0 7.4538 7.4538 95.543 0 0 0 53.04826107763336 15.924325916815931 15.924325916815931 45.20090004407063 0 1.2134679910804405 0 1.4634679910804405 0.2614393726401688 KY{I|L}PGTK;[KT][PG]{I|L}YK 7.4538;1.842 -;- 41 + NaN NaN 109958.2 NaN 526 1157 1684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1688 21.181 NaN 9433 35 0 2346.9 0.411 -1 CSPCSATCEK 10 17 600.2296616482985 NaN 0 600.2293701171875 PEAK HCD FTMS 0 0 0 1687 3406.69921875 0.6606873007001642 1 -0.007986068725585938 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))SPC(Carbamidomethyl (C))SATC(Carbamidomethyl (C))EK_ ADAMTS17|p.W870C|1|0.37|ENSG00000140470|chr15:99997571-99997571|C/A|missense_variant 0.4007161486938917 0.3398413315442166 2 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.33205 0 0 640.5631918495282 394.82346521549067 1035.3866570650189 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.33205 + + 1 + NaN NaN 92751.7 NaN 527 1159 1687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1691 21.197 NaN 311140 35 0 80895 0.327 + 18761 NAAHQEALM 9 46 500.72938102289663 999.4442091125933 2 500.7294616699219 MULTI HCD FTMS 0 0 0 1690 225893.453125 0.6174963303912965 6 -0.05396270751953125 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 67.83816525789305 0.009787749748478139 2 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 79.253 0 0 7.9297 7.9297 91.941 0 0 0 1.8740810491244986 1.8740810491244986 1.8740810491244986 9.208187539523749 0 2.9291746928241125 1.2218487496163564 0 1.1421590589602533 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F};QQHQEA{I|L}{M(Oxidation (M))|F};QQH[AG]EA{I|L}{M(Oxidation (M))|F} 7.9297;7.0084;5.823;4.8963 +;-;-;- + 271 NaN NaN 135915.6 NaN 528 1161 1690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1692 21.201 NaN 37709 35 0 9761.1 0.261 -1 GCMQYFCW 8 23 527.1850834558581 1052.3556139785162 2 527.184814453125 MULTI HCD FTMS 0 0 0 1690 7123.97265625 0.45630482655726784 12 -0.11769294738769531 2 Oxidation (M) _GCM(Oxidation (M))QYFCW_ ENSG00000013561|ENST00000394520|RNF14;nc|ENSG00000013561|Q9UBS8-2|RNF14 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87760.8 NaN 529 1161 1690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1694 21.207 NaN 50258 35 0 7787.1 0.411 + 19564 NSSKDVAVM 9 33 483.7317012660727 965.4488495989455 2 483.7314758300781 MULTI HCD FTMS 0 0 0 1693 28520.177734375 0.3331714363420148 35 -0.3484916687011719 1 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 43.77239144664712 0.04802738721622131 2 [NS]S[WR]AV{M(Oxidation (M))|F} 8 3 [NS] + + 44.002 3.7236 1.8519 4.5577 4.5577 61.668 0 0 0 0 44.0018312907727 0 0 0 1.8807196863200843 0 0.3054621874040891 0 [NS]S[WR]AV{M(Oxidation (M))|F} 4.5577 - 26 + NaN NaN 95857.4 NaN 530 1162 1693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1696 21.215 NaN 86797 35 0 17168 0.411 + 6223 FPERKEREM 9 37 407.87292909000155 1220.5969578702047 3 407.8727111816406 MULTI HCD FTMS 0 0 0 1695 23346.3671875 0.7224649005854803 -10 0.07959938049316406 1 Unmodified _FPERKEREM_ ENSG00000099795|ENST00000215565|NDUFB7 2.0860074813731053 0.33520356328030626 2 PE 2 7 20.969 0 0 1.7179 0 0 976.4739371697201 0 976.4739371697201 0 16.989700043360187 0 0 0 0 0 0 0 + PE 1.7179 + + 7 NaN NaN 104250.7 NaN 531 1163 1695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1698 21.223 NaN 214990 35 0 38966 0.327 + 22537 QSEDGSHTL 9 56 487.21466741236947 972.414781891539 2 487.2142333984375 MULTI HCD FTMS 0 0 0 1697 74466.2265625 0.1380355474143554 -13 0.10324287414550781 1 Unmodified _QSEDGSHTL_ ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C 14.838274106304384 0.23215694253501695 2 A{M(Oxidation (M))|F} 2 9 20.969 0 0 2.1564 0 0 736.3322603845062 0 736.3322603845062 0 5.373475026185794 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 2.1564 - 69 + NaN NaN 113820.6 NaN 532 1164 1697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1699 21.227 NaN 116650 35 0 16123 0.261 -1 EAAGEVRAM 9 43 475.2239495703555 948.433346207511 2 475.2236022949219 MULTI HCD FTMS 0 0 0 1697 61802.23046875 0.23505057814460317 -30 0.25729942321777344 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 21.536976647645854 0.1742816388551942 2 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 46.009 0 0 4.851 4.851 84.688 0 0 0 7.147642715192504 8.226825097560422 7.147642715192504 6.478174818886373 0 0.28872548999643577 0 0.4247425010840047 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}AGEV{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}QEV{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}[DV]AAR{[MS]|[{M(Oxidation (M))|F}A]} 4.851;4.168;3.9836;3.3006;0.7243 +;-;-;-;- + 121 + NaN NaN 100234.1 NaN 533 1164 1697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1701 21.233 NaN 580430 35 0 112210 0.327 -1 0 77 465.2195690622318 928.4245851912636 2 465.2196350097656 MULTI HCD FTMS 0 0 0 1700 189063.59375 0.2265003332717855 14 -0.14195632934570312 1 NaN NaN 2 EA{[QV]|[N{I|L}]|[RA]|[KV]}RE 6 -1 26.718 0 0 2.8778 0 0 198.06343276191564 0 198.06343276191564 0 4.737511817828661 0 0 0 0 0 1.360924374808178 0 EA{[QV]|[N{I|L}]|[RA]|[KV]}RE 2.8778 - 296 NaN NaN 177123.5 NaN 534 1165 1700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1702 21.237 NaN 46257 35 0 11168 0.261 -1 YRLHESCK 8 18 546.7663164231336 1091.5180799130671 2 547.26708984375 MULTI HCD FTMS 0 0 0 1700 2115.612548828125 0.20383616289714013 14 -0.14195632934570312 2 Carbamidomethyl (C) _YRLHESC(Carbamidomethyl (C))K_ ENSG00000074803|ENST00000380993|SLC12A1;nc|ENSG00000074803|Q13621-3|SLC12A1 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103316 NaN 535 1165 1700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1704 21.243 NaN 433530 35 0 42135 0.411 + 8521 HAGSELLQR 9 73 505.7722877717708 1009.5300226103416 2 505.772216796875 MULTI HCD FTMS 0 0 0 1703 155711.21875 0.04500394153521894 -13 0.10754966735839844 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 78.14939416004806 0.006451203201226903 2 EAGSH{I|L}{I|L}QR 9 2 + 105.87 0 0 10.487 10.487 94.441 0 0 0 82.22840819169134 19.730749808046326 19.730749808046326 9.208187539523749 0 1.3411290632962718 1.0457574905606752 0 0.8639829889124311 EAGSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}QR;EQSH{I|L}{I|L}[AG]R;[TA][KS][YR]ER;{[{M(Oxidation (M))|F}H]|[RQ]}[YT]{I|L}{[CA]|SS}R 10.487;9.5753;8.8098;7.8924;0.40812;0.071097 -;-;-;-;-;- 211 + NaN NaN 221880.2 NaN 536 1166 1703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1706 21.251 NaN 651990 35 0 176080 0.327 -1 0 77 465.2195690622318 928.4245851912636 2 465.23260498046875 MULTI HCD FTMS 0 0 0 1705 124774.09375 0.14948078187612474 16 -0.16047286987304688 1 NaN NaN 2 {[QS]|[NT]}EAT 5 -1 22.878 0 0 2.4642 0 0 0 409.1738680475219 409.1738680475219 4.919692612493325 0 0 0 0 0.2614393726401688 0 0.3252574989159953 0 {[QS]|[NT]}EAT 2.4642 - 112 + NaN NaN 182392.8 NaN 537 1167 1705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1707 21.255 NaN 29206 35 0 5583.4 0.261 + -1 ERDKEICN 8 22 553.2505106151415 1104.4864682970829 2 553.2503051757812 MULTI HCD FTMS 0 0 0 1705 8644.0078125 0.2990488575824321 35 -0.3541221618652344 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))ERDKEIC(Carbamidomethyl (C))N_ REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93105.3 NaN 538 1167 1705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1709 21.265 NaN 36400 35 0 7538.1 0.411 -1 MVFHTGTQR 9 33 546.7663164231336 1091.5180799130671 2 546.7659301757812 MULTI HCD FTMS 0 0 0 1708 7421.8525390625 0.5117909586196903 10 -0.100006103515625 1 Oxidation (M) _M(Oxidation (M))VFHTGTQR_ chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000527422.5_1_6:26365529-26368244:+|nuORF;ENST00000530653.5_1_6:26365433-26368244:+|nuORF;ENST00000532865.5_2_6:26365529-26368244:+|nuORF 3.5964929083625545 0.32375295897743744 2 H 1 -1 7.7423 0 0 0.70931 0 0 393.17196282497963 558.2659395807249 951.4379024057046 0 0 0 0 0 0.4247425010840047 0 0 0 H 0.70931 + + 1 + NaN NaN 113574.5 NaN 539 1168 1708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1711 21.273 NaN 39318 35 0 6400.5 0.327 + -1 YMHPICHF 8 17 532.2281436736328 1062.4417344140654 2 532.2283935546875 MULTI HCD FTMS 0 0 0 1710 15772.7587890625 0.14024692613997036 -8 0.07629203796386719 1 Oxidation (M) _YM(Oxidation (M))HPICHF_ REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94105.3 NaN 540 1169 1710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1712 21.278 NaN 13106 35 0 3488.8 0.261 + 32776 WRRWGWLF 8 12 603.8197117691191 1205.624870605038 2 603.8195190429688 MULTI HCD FTMS 0 0 0 1710 4847.0029296875 0.5815880313579602 -4 0.04033088684082031 2 Unmodified _WRRWGWLF_ REV__ENST00000308497.8_1_4:184826565-184826772:+|nuORF 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91891.9 NaN 541 1169 1710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1714 21.283 NaN 46084 35 0 4961.8 0.327 + 9294 HPPLSSSAVT 10 33 498.2614387959391 994.5083246586782 2 498.26141357421875 MULTI HCD FTMS 0 0 0 1713 22727.255859375 0.8367968686514936 -3 0.032291412353515625 1 Unmodified _HPPLSSSAVT_ REV__ENSG00000071909|ENST00000408978|MYO3B;REV__ENST00000409940.6_1_2:171034716-171376051:+|nuORF;REV__ENST00000438642.6_1_2:171034716-171400468:+|nuORF;REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF;REV__nc|ENSG00000071909|Q8WXR4-2|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-3|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-4|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-5|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B;REV__nc|ENSG00000071909|Q8WXR4-7|MYO3B 6.723162845929126 0.4397169348982109 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 103559.9 NaN 542 1170 1713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1715 21.287 NaN 32913 35 0 10321 0.261 -1 VISCYIMY 8 16 524.745711292586 1047.4768696519718 2 524.7457885742188 MULTI HCD FTMS 0 0 0 1713 6130.4345703125 0.20977945431774278 -12 0.109405517578125 2 Carbamidomethyl (C) _VISC(Carbamidomethyl (C))YIMY_ ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21-2|SERINC4;nc|ENSG00000184716|A6NH21|SERINC4 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90054.1 NaN 543 1170 1713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1717 21.293 NaN 134290 35 0 29629 0.327 + 21159 PPPLPGKT 8 44 403.7422741366926 805.4699953401852 2 403.7420349121094 MULTI HCD FTMS 0 0 0 1716 96548.03125 0.6891308668268039 5 -0.05444145202636719 1 Unmodified _PPPLPGKT_ ENST00000588673.3_1_19:2270553-2271441:+|nuORF 15.847184025352803 0.47719562709667024 2 KY{I|L}P{[SA]|[TG]}K 7 5 + 47.682 0 0 5.9198 5.9198 92.914 0 0 0 28.077826050063663 17.63251345633968 17.63251345633968 47.68191981982554 0 1.1989700043360187 0 1.1747425010840047 0 KY{I|L}P{[SA]|[TG]}K 5.9198 - 21 + NaN NaN 103865.2 NaN 544 1171 1716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1718 21.297 NaN 31979 35 0 5481.8 0.261 + 625 APGPAPVWAW 10 23 526.2715999387138 1050.5286469442276 2 526.2730712890625 MULTI HCD FTMS 0 0 0 1716 6685.0712890625 0.34196709309190315 -5 0.050304412841796875 2 Unmodified _APGPAPVWAW_ REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF 1.844237919475145 0.46554186016084764 2 V 1 -1 6.9897 0 0 0.66535 0 0 461.21152155535884 487.2294100397094 948.4409315950683 0 0 0 0 0 0 0 0 0 V 0.66535 + + 1 + NaN NaN 88740.5 NaN 545 1171 1716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1719 21.301 NaN 69728 35 0 8959.3 0.261 -1 QGTPLTCSP 9 32 480.7265062004678 959.4384594677356 2 481.22821044921875 MULTI HCD FTMS 0 0 0 1716 12222.0263671875 0.4690730876472029 -10 0.09621047973632812 3 Carbamidomethyl (C) _QGTPLTC(Carbamidomethyl (C))SP_ ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-2|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2;nc|ENSG00000151623|P08235-4|NR3C2 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96741.3 NaN 546 1171 1716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1721 21.306 NaN 57179 35 0 10599 0.411 -1 SPSPMDPHM 9 42 515.7019911195482 NaN 0 515.701904296875 PEAK HCD FTMS 0 0 0 1720 14888.1259765625 0.6879487500452377 1 -0.00821685791015625 1 2 Oxidation (M) _SPSPM(Oxidation (M))DPHM(Oxidation (M))_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 4.3292370932331545 0.2742679634796037 2 Q 1 -1 11.99 0 0 1.1647 0 0 271.11246504984007 627.2086577297065 898.3211227795466 0 0 0 0 0 0.5 0 0 0 Q 1.1647 - 10 + NaN NaN 96519.5 NaN 547 1172 1720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1723 21.314 NaN 74496 35 0 19551 0.327 -1 NAAHQEALM 9 20 500.72938102289663 999.4442091125933 2 500.72967529296875 MULTI HCD FTMS 0 0 0 1722 50526.4140625 0.13811766051564248 18 -0.18326759338378906 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 22.736283301280096 0.1639198954644489 2 A{I|L}{M(Oxidation (M))|F} 3 -1 40.005 0 0 4.0027 0 0 650.2744007794937 0 650.2744007794937 0 38.41129063296272 0 0 0 1.3807196863200843 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.0027 + + 31 NaN NaN 104616.7 NaN 548 1173 1722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1724 21.319 NaN 43813 35 0 10269 0.261 + -1 KALLLLCKV 9 23 529.3454656512473 NaN 0 529.344970703125 PEAK HCD FTMS 0 0 0 1722 1897.81982421875 0.22245889066318675 -3 0.03143882751464844 2 Carbamidomethyl (C) _KALLLLC(Carbamidomethyl (C))KV_ REV__ENSG00000168026|ENST00000683103|TTC21A;REV__ENST00000473587.1_1_3:39172463-39175709:+|nuORF;REV__nc|ENSG00000168026|Q8NDW8-5|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-7|TTC21A;REV__nc|ENSG00000168026|Q8NDW8|TTC21A 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85399.1 NaN 549 1173 1722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1726 21.324 NaN 120700 35 0 13978 0.327 + 22555 QSHLLARG 8 42 441.25145364522837 880.4883543572568 2 441.25140380859375 MULTI HCD FTMS 0 0 0 1725 45090.6796875 0.5812002158602938 -6 0.059368133544921875 1 Unmodified _QSHLLARG_ REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF 26.268140514670165 0.400522237374671 2 QSH{I|L}{I|L}QR 7 -1 + 71.758 0 0 8.1498 8.1498 93.038 0 0 0 69.5398793788165 16.320232147054057 16.320232147054057 9.33053210369387 0 1.2302046884880937 0 0.5 0 QSH{I|L}{I|L}QR;QSH{I|L}{I|L}[AG]R 8.1498;7.0901 -;- 77 + NaN NaN 119017.7 NaN 550 1174 1725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1727 21.329 NaN 95004 35 0 10335 0.261 + 30150 VGRWETER 8 43 516.7640250632227 1031.5134971932453 2 516.7637939453125 MULTI HCD FTMS 0 0 0 1725 35827.12890625 0.8152955728628453 -2 0.018177032470703125 2 Unmodified _VGRWETER_ ENST00000416395.5_1_2:70257529-70257601:-|nuORF 12.531546534597751 0.5015908124873912 2 R 1 7 19.732 0 0 1.9129 0 0 857.4019382106266 0 857.4019382106266 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 + R 1.9129 + + 1 + NaN NaN 108222.8 NaN 551 1174 1725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1729 21.334 NaN 379500 35 0 67348 0.327 + 10222 IHGVTAGR 8 53 405.73272859566686 809.4509042581337 2 405.7325134277344 MULTI HCD FTMS 0 0 0 1728 103685.796875 0.6941932334715013 -1 0.009912490844726562 1 Unmodified _IHGVTAGR_ KIAA1614|p.P218A|1|0.17|ENSG00000135835|chr1:180916755-180916755|C/G|missense_variant 18.13498045792455 0.4603629008820478 2 [SG]H{I|L}{I|L}QR 7 6 + 55.221 0 0 6.8221 6.8221 90.72 0 0 0 54.50781977329818 16.320232147054057 16.320232147054057 9.33053210369387 0 1.3494850021680094 0 0 0 [SG]H{I|L}{I|L}QR;[SG]H{I|L}{I|L}[AG]R 6.8221;5.6694 -;- 26 + NaN NaN 162808.5 NaN 552 1175 1728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1730 21.339 NaN 28884 35 0 4096.2 0.261 -1 NSSKDVAVM 9 19 483.7317012660727 965.4488495989455 2 483.73150634765625 MULTI HCD FTMS 0 0 0 1728 12961.884765625 0.15142015611837836 48 -0.4569072723388672 2 Oxidation (M) _NSSKDVAVM(Oxidation (M))_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 6.723162845929126 0.3000504726104499 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.6898 0 0 701.3343983380875 0 701.3343983380875 0 19.49092531119419 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.6898 + + 7 NaN NaN 90948 NaN 553 1175 1728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1731 21.342 NaN 87977 35 0 17502 0.261 + 6224 FPERKEREM 9 31 407.87292909000155 1220.5969578702047 3 408.2070617675781 MULTI HCD FTMS 0 0 0 1728 12948.884765625 0.42723542039245327 8 -0.07686996459960938 3 Unmodified _FPERKEREM_ ENSG00000099795|ENST00000215565|NDUFB7 4.189502756095605 0.319257502753388 2 PE 2 7 25.969 0 0 2.1276 0 0 976.4775894320169 0 976.4775894320169 0 15.511525224473813 0 0 0 0.5 0 0 0 + PE 2.1276 + + 7 NaN NaN 92489.8 NaN 554 1175 1728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1733 21.347 NaN 863770 35 0 157550 0.327 + 22538 QSEDGSHTL 9 77 487.21466741236947 972.414781891539 2 487.2147216796875 MULTI HCD FTMS 0 0 0 1732 470963.5 0.8730092491005663 -1 0.013086318969726562 1 Unmodified _QSEDGSHTL_ ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C 99.79894945604345 0.0042691968066200965 2 A[SG]EDGSHT{I|L} 10 2 + 54.938 0 0 5.6496 5.6496 91.787 0 0 0 18.074185217820776 13.819459175083608 13.819459175083608 32.3167597324317 0 0.8945990182825422 0 1.5356668758921828 0 A[SG]EDGSHT{I|L};{[QS]|[NT]}[Q{I|L}]GDP[DN];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{I|L}]DP[DN] 5.6496;2.3262;1.7592 -;-;- 438 + NaN NaN 225872.4 NaN 555 1176 1732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1734 21.352 NaN 55786 35 0 10191 0.261 + 14022 KYTPPPHHI 9 28 545.2956430278737 1088.5767331225472 2 545.2957153320312 MULTI HCD FTMS 0 0 0 1732 30375.466796875 0.1012187969476962 -16 0.15826797485351562 2 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 20.453626601364224 0.18364154288633264 2 KYTP 4 5 41.938 0 0 3.8526 0 0 0 596.2964571588499 596.2964571588499 41.938200260161125 0 0 0 0 1 0 0 0 + KYTP 3.8526 + + 10 + NaN NaN 102055.8 NaN 556 1176 1732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1736 21.357 NaN 311090 35 0 49638 0.411 + 2986 EAAGEVRAM 9 71 475.2239495703555 948.433346207511 2 475.2238464355469 MULTI HCD FTMS 0 0 0 1735 190679.546875 0.7252058282262547 -17 0.16811561584472656 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 118.0683919894846 0.0016252157255221692 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 75.275 0 0 7.9367 7.9367 91.055 0 0 0 39.15591478435424 14.973024840566467 14.973024840566467 9.09256854528806 0 2.017581420512853 0 0.3494850021680094 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F} 7.9367;6.978;6.3263;6.2668;5.6432;5.1744;4.7024;4.643;4.0194;3.9655 +;-;-;-;-;-;-;-;-;- + 994 + NaN NaN 188957.6 NaN 557 1177 1735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1738 21.365 NaN 4680000 35 0 527910 0.327 + 151 AEGTHVIQR 9 115 505.7722877717708 1009.5300226103416 2 505.7728271484375 MULTI HCD FTMS 0 0 0 1737 3400968.25 0.9829540704570194 -1 0.0077915191650390625 1 Unmodified _AEGTHVIQR_ REV__ENSG00000170631|ENST00000394909|ZNF16 111.28704002717404 0.0027322905094575235 2 EAGSH{I|L}{I|L}QR 9 -1 + 130.17 0 0 12.894 12.894 94.657 0 0 0 86.88879389667525 20.285371682087217 20.285371682087217 9.208187539523749 0 1.9291746928241125 1.0457574905606752 1.024227503252014 1.6808845489566888 EAGSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}QR;EQSH{I|L}{I|L}[AG]R;EAG[KQ]{[HG]|PP}QR;{[CP]|[EA]}GSH{I|L}{I|L}QR;{[CP]|[EA]}GSH{I|L}{I|L}[AG]R;[TA][DG]H{I|L}{I|L}QR;[H{I|L}]SG{[CP]|[EA]}{I|L}QR;[HS]G{[CP]|[EA]}{I|L}{I|L}QR 12.894;11.982;10.646;9.7288;6.2303;5.7483;4.8362;4.834;4.6021;4.5951 -;-;-;-;-;-;-;-;-;- 1809 + NaN NaN 794297.2 NaN 558 1178 1737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1739 21.369 NaN 49165 35 0 9727.6 0.261 + -1 PGCCVPMCC 9 24 513.6702026028787 1025.3258522725573 2 513.6705322265625 MULTI HCD FTMS 0 0 0 1737 13856.1611328125 0.7083619982278855 2 -0.022579193115234375 2 2 Carbamidomethyl (C) _PGC(Carbamidomethyl (C))C(Carbamidomethyl (C))VPMCC_ REV__CON__P60413;REV__ENSG00000189169|ENST00000400365|KRTAP10-12 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88310.6 NaN 559 1178 1737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1741 21.374 NaN 649960 35 0 215860 0.327 -1 0 70 465.2195690622318 928.4245851912636 2 465.2327880859375 MULTI HCD FTMS 0 0 0 1740 25452.1484375 0.030491962991033034 28 -0.28308868408203125 1 NaN NaN 2 TTP[RD]K{M(Oxidation (M))|F} 7 -1 24.984 0 0 2.691 0 0 65.02282061304204 0 65.02282061304204 0 2.280476847639079 0 0 0 0.4247425010840047 0 0.6747425010840047 0 TTP[RD]K{M(Oxidation (M))|F} 2.691 - 99 + NaN NaN 179066.2 NaN 560 1179 1740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1742 21.379 NaN 37036 35 0 5529.8 0.261 + 35337 YWNIRGLA 8 28 496.76715064624665 991.5197483592933 2 496.7676696777344 MULTI HCD FTMS 0 0 0 1740 10285.8837890625 0.5421110509951862 1 -0.012952804565429688 2 Unmodified _YWNIRGLA_ ENSG00000213366|ENST00000241337|GSTM2;ENST00000414179.6_1_1:110210737-110211550:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;nc|ENSG00000213366|P28161-2|GSTM2 7.910154910731844 0.5302565402355366 2 {I|L} 1 7 15.485 0 0 1.5617 0 0 463.18150480636206 412.23020349674067 875.4117083031027 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.5617 + + 2 + NaN NaN 85824.6 NaN 561 1179 1740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1743 21.382 NaN 28946 35 0 6996.3 0.261 -1 0 16 553.2505106151415 1104.4864682970829 2 553.7522583007812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 98347.2 NaN 562 1179 1740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1745 21.388 NaN 33167 35 0 5970.8 0.411 + -1 RHIWFICV 8 32 565.80011035429 NaN 0 565.8001098632812 PEAK HCD FTMS 0 0 0 1744 5597.0830078125 0.5615194202550963 -8 0.08139419555664062 1 Carbamidomethyl (C) _RHIWFIC(Carbamidomethyl (C))V_ REV__ENST00000260753.8_1_10:91468999-91469138:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104429.5 NaN 563 1180 1744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1747 21.395 NaN 188270 35 0 31081 0.411 + 5574 FLMHECFH 8 51 532.2281436736328 1062.4417344140654 2 532.2282104492188 MULTI HCD FTMS 0 0 0 1746 85870.609375 0.7635372588694541 4 -0.04278373718261719 1 Unmodified _FLMHECFH_ REV__ENSG00000119912|ENST00000265986|IDE;REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF 2.577480529830294 0.5381683276125971 2 R 1 -1 15.485 0 0 1.4574 0 0 888.330480607228 0 888.330480607228 0 10 0 0 0 0 0 0 0 R 1.4574 - 10 + NaN NaN 148841.5 NaN 564 1181 1746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1749 21.403 NaN 45420 35 0 4643.2 0.411 + 9057 HPESTPKSL 9 45 498.2614387959391 994.5083246586782 2 498.2605285644531 MULTI HCD FTMS 0 0 0 1748 14571.4599609375 0.5365078891371461 9 -0.09434890747070312 1 Unmodified _HPESTPKSL_ ENSG00000100139|ENST00000215957|MICALL1 29.081581746732265 0.1154664336125038 2 HVH 3 8 23.188 0 0 2.3316 0 0 0 618.2911471002561 618.2911471002561 16.197887582883936 0 0 0 0 0 0 0 0 HVH 2.3316 - 18 + NaN NaN 99165.1 NaN 565 1182 1748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1751 21.411 NaN 52321 35 0 6187.8 0.327 + -1 ERAEREVC 8 28 524.745711292586 1047.4768696519718 2 524.7455444335938 MULTI HCD FTMS 0 0 0 1750 19280.392578125 0.6597624014548034 1 -0.01306915283203125 1 Carbamidomethyl (C) _ERAEREVC(Carbamidomethyl (C))_ REV__ENSG00000175229|ENST00000312006|GAL3ST3 1.844237919475145 0.5392561982033289 2 E 1 -1 0.71334 0 0 0.068101 0 0 394.56513977091555 520.8326510065061 915.3977907774217 0 0 0 0 0 0 0 0 0 E 0.068101 + + 3 + NaN NaN 115173.2 NaN 566 1183 1750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1752 21.415 NaN 35347 35 0 4045.1 0.261 + 2391 DPHNIRIQ 8 26 496.7653390879226 991.5161252426452 2 496.76446533203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DPHNIRIQ_ REV__ENSG00000166035|ENST00000299022|LIPC 4.3292370932331545 0.5355693454741696 2 {I|L} 1 -1 8.9794 0 0 0.90562 0 0 463.17800376002646 412.2307222955688 875.4087260555953 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 0.90562 + + 5 + NaN NaN 84888.1 NaN 567 1183 1750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1753 21.419 NaN 41170 35 0 11097 0.261 + 626 APGPAPVWAW 10 25 526.2715999387138 1050.5286469442276 2 526.7725830078125 MULTI HCD FTMS 0 0 0 1750 14136.9296875 0.6630608347864482 6 -0.06499290466308594 3 Unmodified _APGPAPVWAW_ REV__ENST00000273221.8_2_3:13008895-13009162:-|nuORF 4.3292370932331545 0.45238836448149167 2 YT 2 -1 10.969 0 0 1.0442 0 0 213.08945124285884 570.2992037408811 783.38865498374 0 0 0 0 0 0 0 0 0 YT 1.0442 - 5 + NaN NaN 94177.9 NaN 568 1183 1750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1755 21.424 NaN 90591 35 0 30085 0.411 + -1 NADPACLLS 9 38 480.7265062004678 959.4384594677356 2 480.7261047363281 MULTI HCD FTMS 0 0 0 1754 33909.90234375 0.7637995038125591 1 -0.014127731323242188 1 Carbamidomethyl (C) _NADPAC(Carbamidomethyl (C))LLS_ REV__ENSG00000163064|ENST00000295206|EN1 14.838274106304384 0.23215694253501695 2 {[QG]|[NA]}D 3 -1 38.429 0 0 4.0053 0 0 0 656.3093755656449 656.3093755656449 24.47621246364342 0 0 0 0 1 1.5228787452803376 0 0.4247425010840047 {[QG]|[NA]}D 4.0053 + + 6 NaN NaN 111395.5 NaN 569 1184 1754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1757 21.438 NaN 23601 35 0 7349.4 0.411 + 23068 REEQEEPEP 9 17 571.7513742194301 1141.48819550566 2 571.7517700195312 MULTI HCD FTMS 0 0 0 1756 10615.6884765625 0.6369408856251931 -9 0.09098052978515625 1 Unmodified _REEQEEPEP_ REV__ENSG00000170035|ENST00000410062|UBE2E3;REV__ENST00000602762.5_1_2:181846769-181940241:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95314.7 NaN 570 1185 1756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1759 21.446 NaN 104540 35 0 11449 0.327 + 22556 QSHLLARG 8 44 441.25145364522837 880.4883543572568 2 441.2514343261719 MULTI HCD FTMS 0 0 0 1758 31501.03515625 0.40603531726559106 6 -0.059406280517578125 1 Unmodified _QSHLLARG_ REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF 32.78568957990786 0.32360605643721263 2 AGSH{I|L}{I|L}QR 8 -1 + 82.416 0 0 9.3602 9.3602 94.446 0 0 0 80.42587241604323 16.40978057358332 16.40978057358332 9.262137858390815 0 1.6549471895720984 0 0.5 0 AGSH{I|L}{I|L}QR;AGSH{I|L}{I|L}[AG]R;[HS]Q{I|L}{I|L}RQ;[HS]Q{I|L}{I|L}QR;[HS][AG]{I|L}{I|L}RQ;[HS][AG]{I|L}{I|L}QR;[HS]Q{I|L}{I|L}[AG]R;[HS][AG]{I|L}{I|L}[AG]R 9.3602;8.3083;5.6703;5.5544;4.6106;4.4947;4.4947;3.4427 -;-;-;-;-;-;-;- 122 + NaN NaN 105085.5 NaN 571 1186 1758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1760 21.451 NaN 76474 35 0 11507 0.261 + 25068 SACFQEQQEM 10 35 400.82613798121315 NaN 0 400.3503112792969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SACFQEQQEM_ ENST00000394921.8_1_7:75144035-75156997:-|nuORF;ENST00000418756.5_1_7:75141716-75156997:-|nuORF;ENST00000430602.5_1_7:75144035-75157107:-|nuORF 0.35063188157827746 0.339884196735365 2 V 1 10 0.3786 0 0 0.047347 0 0 545.4491987145764 152.09140955142814 697.5406082660045 0 0 0 0 0 0 0 0 0 V 0.047347 - 1 + NaN NaN 105955.8 NaN 572 1186 1758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1762 21.456 NaN 238030 35 0 35426 0.327 + 25619 SGHAALVR 8 41 405.73272859566686 809.4509042581337 2 405.7325134277344 MULTI HCD FTMS 0 0 0 1761 65316.01171875 0.43730129621479585 11 -0.10652542114257812 1 Unmodified _SGHAALVR_ REV__ENSG00000128271|ENST00000337539|ADORA2A 16.942295170755138 0.46913822049235215 2 [SG]H{I|L}{I|L}QR 7 -1 + 55.221 0 0 6.8221 6.8221 90.72 0 0 0 53.627363478019774 16.320232147054057 16.320232147054057 9.33053210369387 0 1.3494850021680094 0 0 0 [SG]H{I|L}{I|L}QR;[SG]H{I|L}{I|L}[AG]R 6.8221;5.6694 -;- 30 + NaN NaN 127004.8 NaN 573 1187 1761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1763 21.461 NaN 32246 35 0 10097 0.261 + 23811 RRRCHGVNN 9 18 556.2861736017899 1110.5577942703796 2 556.2869873046875 MULTI HCD FTMS 0 0 0 1761 4892.6650390625 0.4695361721054734 -4 0.04506874084472656 2 Unmodified _RRRCHGVNN_ REV__ENSG00000178591|ENST00000382410|DEFB125 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103579.9 NaN 574 1187 1761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1765 21.466 NaN 221450 35 0 38494 0.327 + 22539 QSEDGSHTL 9 51 487.21466741236947 972.414781891539 2 487.2145080566406 MULTI HCD FTMS 0 0 0 1764 93275.90625 0.17290241998474895 11 -0.10645866394042969 1 Unmodified _QSEDGSHTL_ ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C 19.256988751693697 0.19398022840297344 2 D[QT]DGSH[{I|L}T] 9 3 + 23.98 0 0 2.466 2.466 81.902 0 0 0 1.7609125905568135 3.010592250701606 1.7609125905568135 4.771212547196626 0 0 0 0.28872548999643577 0 D[QT]DGSH[{I|L}T];{[QS]|[NT]}EDGSH[{I|L}T] 2.466;1.9753 -;+ + 91 + NaN NaN 122119.4 NaN 575 1188 1764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1766 21.471 NaN 33758 35 0 10937 0.261 + 9146 HPHTRKFT 8 21 512.2770590146802 1022.5395650961603 2 512.2769775390625 MULTI HCD FTMS 0 0 0 1764 11738.62109375 0.7914635554753141 -9 0.09154891967773438 2 Unmodified _HPHTRKFT_ ENSG00000186976|ENST00000262726|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95820.2 NaN 576 1188 1764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1768 21.476 NaN 446440 35 0 71519 0.327 + 14023 KYTPPPHHI 9 64 545.2956430278737 1088.5767331225472 2 545.295654296875 MULTI HCD FTMS 0 0 0 1767 247609.984375 0.8250995745439471 -3 0.029882431030273438 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 107.1870275148908 0.00340162908551068 2 KYTPPQT 7 4 63.607 0 0 5.8431 0 0 0 270.1241549127563 270.1241549127563 36.38821053634146 0 0 0 0 1.555462187404089 0 1.5356668758921828 0 KYTPPQT 5.8431 - 607 + NaN NaN 147992.9 NaN 577 1189 1767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1769 21.481 NaN 429290 35 0 71810 0.261 + 2987 EAAGEVRAM 9 60 475.2239495703555 948.433346207511 2 475.2237854003906 MULTI HCD FTMS 0 0 0 1767 224584.234375 0.8541545140300258 -5 0.05192375183105469 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 103.35351024395868 0.004027461563756449 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 72.075 0 0 7.5994 7.5994 90.456 0 0 0 37.71677333756239 14.973024840566467 14.973024840566467 9.09256854528806 0 1.697621246364342 0 0.3494850021680094 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}AG[KA]{[QG]|[NA]}A{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F} 7.5994;6.6407;4.7656;4.6096;3.9266;3.5599;3.3757;3.2197;2.8454;2.5849 +;-;-;-;-;-;-;-;-;- + 541 + NaN NaN 166354.2 NaN 578 1189 1767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1770 21.484 NaN 80335 35 0 10578 0.261 + 6225 FPERKEREM 9 43 407.87292909000155 1220.5969578702047 3 407.872802734375 MULTI HCD FTMS 0 0 0 1767 13696.6875 0.42385078130425474 16 -0.16027069091796875 3 Unmodified _FPERKEREM_ ENSG00000099795|ENST00000215565|NDUFB7 2.498486711656943 0.33207666356665205 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108667 NaN 579 1189 1767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1772 21.49 NaN 1576500 35 0 184100 0.412 + 152 AEGTHVIQR 9 96 505.7722877717708 1009.5300226103416 2 505.7725830078125 MULTI HCD FTMS 0 0 0 1771 1042239.125 0.3012298601459488 11 -0.09881973266601562 1 Unmodified _AEGTHVIQR_ REV__ENSG00000170631|ENST00000394909|ZNF16 99.79894945604345 0.0042691968066200965 2 EAGSH{I|L}{I|L}QR 9 -1 + 125 0 0 12.382 12.382 94.65 0 0 0 85.64264090628676 20.285371682087217 20.285371682087217 9.208187539523749 0 1.9436726795685342 0.8860566476931632 1.024227503252014 1.3098943791441968 EAGSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;AEGSH{I|L}{I|L}QR;AEGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}QR;EQSH{I|L}{I|L}[AG]R;{[CP]|[EA]}GSH{I|L}{I|L}QR;{[CP]|[EA]}GSH{I|L}{I|L}[AG]R;[TA][DG]H{I|L}{I|L}QR;[H{I|L}]Q{[ES]|[DT]|[{I|L}C]}{I|L}QR 12.382;11.47;11.265;10.353;10.255;9.3373;5.7508;4.8387;4.4503;4.337 -;-;-;-;-;-;-;-;-;- 995 + NaN NaN 574077.1 NaN 580 1190 1771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1774 21.498 NaN 182020 35 0 45657 0.411 -1 0 51 465.2195690622318 928.4245851912636 2 465.2326965332031 MULTI HCD FTMS 0 0 0 1773 15276.9453125 0.01830195404638071 40 -0.3669090270996094 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 18.852 0 0 2.0305 0 0 763.3782575318871 0 763.3782575318871 0 3.903018563800984 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 2.0305 - 43 + NaN NaN 143923.6 NaN 581 1191 1773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1776 21.506 NaN 22672 35 0 5045 0.411 + 15004 LLLLLLFLY 9 19 560.8713991963008 NaN 0 560.871826171875 PEAK HCD FTMS 0 0 0 1775 5801.5224609375 0.4375554147635315 46 -0.4203624725341797 1 Unmodified _LLLLLLFLY_ REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110772.8 NaN 582 1192 1775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1778 21.514 NaN 40980 35 0 6436.8 0.327 + -1 YMHPICHF 8 20 532.2281436736328 1062.4417344140654 2 532.2279052734375 MULTI HCD FTMS 0 0 0 1777 28717.111328125 0.2553444609944637 16 -0.15964126586914062 1 Oxidation (M) _YM(Oxidation (M))HPICHF_ REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense 0.7936320650641473 0.540814922690045 2 E 1 -1 5.4846 0 0 0.51622 0 0 184.0438595134779 746.3216036432249 930.3654631567028 0 0 0 0 0 0 0 0 0 E 0.51622 - 1 + NaN NaN 90829.1 NaN 583 1193 1777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1779 21.518 NaN 34262 35 0 5310.8 0.261 -1 QSVQEDPRM 9 30 553.2505106151415 1104.4864682970829 2 553.2503662109375 MULTI HCD FTMS 0 0 0 1777 7447.908203125 0.2576684898760156 61 -0.5771751403808594 2 Oxidation (M) _QSVQEDPRM(Oxidation (M))_ ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5 0.5247636613948944 0.34703895399870666 2 {M(Oxidation (M))|F} 1 -1 0.088644 0 0 0.0080258 0 0 724.3927926152454 230.02820764713127 954.4210002623767 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.0080258 + + 1 + NaN NaN 99226.4 NaN 584 1193 1777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1780 21.522 NaN 38623 35 0 10296 0.261 + -1 FRHHCWKG 8 25 564.2696533203125 NaN 0 564.2696533203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FRHHC(Carbamidomethyl (C))WKG_ REV__ENSG00000166351|ENST00000299443|POTED;REV__ENSG00000230031|ENST00000454856|POTEB2;REV__ENSG00000233917|ENST00000439682|POTEB;REV__ENSG00000278522|ENST00000611217|POTEB3;REV__nc|ENSG00000278522|A0JP26-2|POTEB3;REV__nc|ENSG00000278522|A0JP26-3|POTEB3;REV__POTEB3|p.C34Y|1|0.17|ENSG00000278522|chr15:21439911-21439911|C/T|missense_variant;REV__POTEB3|p.M24I|1|0.18|ENSG00000278522|chr15:21439940-21439940|C/A|missense_variant;REV__POTEB3|p.M24K|1|0.18|ENSG00000278522|chr15:21439941-21439941|A/T|missense_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87784.2 NaN 585 1193 1777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1782 21.527 NaN 35052 35 0 6236.2 0.327 + -1 YHKQLCMK 8 19 562.2740239509392 NaN 0 562.2745971679688 PEAK HCD FTMS 0 0 0 1781 11438.869140625 1 0 0 1 Carbamidomethyl (C),Oxidation (M) _YHKQLC(Carbamidomethyl (C))M(Oxidation (M))K_ REV__ENSG00000106648|ENST00000392800|GALNTL5 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97248.7 NaN 586 1194 1781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1783 21.532 NaN 12903 35 0 4915.3 0.261 + -1 CWFCHCCL 8 11 621.7169189453125 NaN 0 621.7169189453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))WFC(Carbamidomethyl (C))HC(Carbamidomethyl (C))C(Carbamidomethyl (C))L_ REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|222|2|anti-sense;REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|310|3|anti-sense 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89977.4 NaN 587 1194 1781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1785 21.537 NaN 32638 35 0 4646.9 0.327 -1 0 23 550.2778193786742 1098.5410858241482 2 550.2776489257812 MULTI HCD FTMS 0 0 0 1784 6765.4228515625 0.7015252858917409 -3 0.03147125244140625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93689.2 NaN 588 1195 1784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1786 21.542 NaN 34219 35 0 10701 0.261 -1 QMVDPREQS 9 22 553.2505106151415 1104.4864682970829 2 553.2508544921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _QM(Oxidation (M))VDPREQS_ ZBTB41|p.L879V|1|0.17|ENSG00000177888|chr1:197159454-197159454|G/C|missense_variant 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98206.4 NaN 589 1195 1784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1788 21.547 NaN 32109 35 0 5585.7 0.411 + -1 HCEFIELR 8 32 552.2685569614578 1102.5225609897154 2 552.7692260742188 MULTI HCD FTMS 0 0 0 1787 4989.51953125 0.9227237289014095 1 -0.008039474487304688 1 Carbamidomethyl (C) _HC(Carbamidomethyl (C))EFIELR_ REV__ENSG00000103994|ENST00000564754|ZNF106;REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106;REV__nc|ENSG00000103994|Q9H2Y7|ZNF106 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90938.3 NaN 590 1196 1787 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1791 21.563 NaN 39091 35 0 9531.9 0.327 + 32507 WFWESGFSP 9 18 571.7513742194301 1141.48819550566 2 571.7509765625 MULTI HCD FTMS 0 0 0 1790 8698.025390625 0.521881176875781 4 -0.04205513000488281 1 Unmodified _WFWESGFSP_ REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENST00000367585.1_1_6:143823176-143832783:-|nuORF;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105403.7 NaN 591 1198 1790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1792 21.567 NaN 14970 35 0 2428.7 0.261 + -1 VRNSSRLMML 10 15 619.8207087260986 NaN 0 619.759765625 PEAK HCD FTMS 0 0 0 1790 3872.6005859375 0.4955655146627317 -5 0.04901123046875 2 2 Oxidation (M) _VRNSSRLM(Oxidation (M))M(Oxidation (M))L_ REV__ENST00000503171.5_1_4:106317436-106374979:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92730.1 NaN 592 1198 1790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1795 21.58 NaN 75766 35 0 28889 0.411 + 33023 YCFEILYKQR 10 28 454.9006393967861 NaN 0 454.9006042480469 PEAK HCD FTMS 0 0 0 1794 46994.578125 0.5541344293981596 312 -3.268003463745117 1 Unmodified _YCFEILYKQR_ REV__ENSG00000066185|ENST00000372565|ZMYND12;REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124922.1 NaN 593 1200 1794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1797 21.588 NaN 72607 35 0 9655.1 0.327 -1 NPEHASVAM 9 34 486.21622525788825 970.4178975825765 2 486.2160339355469 MULTI HCD FTMS 0 0 0 1796 50335.3203125 0.4645461098851404 23 -0.21955299377441406 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 37.97399986684836 0.07464525285885698 2 Y{[WN]|[YH]}VA{M(Oxidation (M))|F} 6 -1 44.966 0 0 4.6337 0 0 172.08360488105626 0 172.08360488105626 0 39.4812969097282 0 0 0 1 0 0 0.805462187404089 Y{[WN]|[YH]}VA{M(Oxidation (M))|F} 4.6337 - 42 NaN NaN 110589.7 NaN 594 1201 1796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1798 21.593 NaN 33106 35 0 6553.6 0.261 + 33180 YEVEEPNEYYC 11 23 479.8552701116126 NaN 0 479.8553771972656 PEAK HCD FTMS 0 0 0 1796 6998.1455078125 0.5255157549837493 224 -2.316347122192383 2 Unmodified _YEVEEPNEYYC_ ENSG00000135077|ENST00000307851|HAVCR2 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106309.4 NaN 595 1201 1796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1799 21.596 NaN 19689 35 0 4598.8 0.261 + -1 LFICLYWP 8 13 556.2861736017899 1110.5577942703796 2 556.286376953125 MULTI HCD FTMS 0 0 0 1796 4201.94091796875 0.40324919819453897 10 -0.10118293762207031 3 Carbamidomethyl (C) _LFIC(Carbamidomethyl (C))LYWP_ REV__ENSG00000089057|ENST00000338244|SLC23A2;REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF;REV__nc|ENSG00000089057|Q9UGH3-2|SLC23A2;REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106441.3 NaN 596 1201 1796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1800 21.6 NaN 37062 35 0 11927 0.261 + 7566 FYEPHKPW 8 27 552.2685569614578 1102.5225609897154 2 552.7705078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FYEPHKPW_ REV__ENSG00000188811|ENST00000379600|NHLRC3;REV__ENST00000473371.1_1_13:39613176-39613868:+|nuORF;REV__nc|ENSG00000188811|Q5JS37-2|NHLRC3 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84525.5 NaN 597 1201 1796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1802 21.605 NaN 308540 35 0 48850 0.327 + 14024 KYTPPPHHI 9 57 545.2956430278737 1088.5767331225472 2 545.295654296875 MULTI HCD FTMS 0 0 0 1801 170235.796875 0.5672690619817107 10 -0.0945587158203125 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 100.37149154755038 0.004254194004462789 2 KYTPPQT 7 4 56.904 0 0 5.2273 0 0 0 270.1247652643188 270.1247652643188 30.93449480898549 0 0 0 0 1 0 1.8098943791441968 0 KYTPPQT 5.2273 - 149 + NaN NaN 139003 NaN 598 1202 1801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1803 21.609 NaN 37478 35 0 10422 0.261 + 9670 HVHRAIYQ 8 23 512.2770590146802 1022.5395650961603 2 512.27734375 MULTI HCD FTMS 0 0 0 1801 1984.709228515625 0.13381682652845822 5 -0.052921295166015625 2 Unmodified _HVHRAIYQ_ HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|130|3|sense 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86493.4 NaN 599 1202 1801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1805 21.615 NaN 553910 35 0 59833 0.327 + 8522 HAGSELLQR 9 58 505.7722877717708 1009.5300226103416 2 505.7723388671875 MULTI HCD FTMS 0 0 0 1804 258208.828125 0.07462798825993323 24 -0.21796226501464844 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 58.678817012210395 0.019429721296335044 2 EAGSH{I|L}{I|L}QR 9 2 + 90.302 0 0 8.9449 8.9449 91.325 0 0 0 69.72840819169134 16.478174818886373 16.478174818886373 6.478174818886373 0 1.3441876774005248 0 0 0.3494850021680094 EAGSH{I|L}{I|L}QR;EQSH{I|L}{I|L}QR;EAGSH{I|L}{I|L}[AG]R;EQSH{I|L}{I|L}[AG]R;{[{M(Oxidation (M))|F}H]|[RQ]}[YT]{I|L}{[CA]|SS}R 8.9449;8.3032;8.0328;7.3857;0.63004 -;-;-;-;- 168 + NaN NaN 166547.2 NaN 600 1203 1804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1806 21.619 NaN 444210 35 0 64090 0.261 + 2988 EAAGEVRAM 9 73 475.2239495703555 948.433346207511 2 475.2238464355469 MULTI HCD FTMS 0 0 0 1804 197594.90625 0.751506808091267 9 -0.08441925048828125 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 82.5293158979368 0.005033931517079822 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 67.59 0 0 7.1265 7.1265 91.307 0 0 0 53.77788008741233 14.973024840566467 14.973024840566467 9.365429718850734 0 1.5986198691406326 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[CP]|[EA]}GAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[CP]|[EA]}GV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F} 7.1265;6.139;3.9001;3.7387;3.2171;2.6648;2.3785;2.2171;1.6954;1.558 +;-;-;-;-;-;-;-;-;- + 446 + NaN NaN 158921 NaN 601 1203 1804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1807 21.623 NaN 42067 35 0 7635.4 0.261 + 33387 YGMRETTSIA 10 20 564.7724197403246 NaN 0 564.7607421875 PEAK HCD FTMS 0 0 0 1804 4087.4521484375 0.784353486409234 8 -0.07447052001953125 3 Unmodified _YGMRETTSIA_ REV__tr|U7T218|U7T218_FUSNUGlycine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glyQPE=3SV=1 3.2813086475875832 0.33737594360511275 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86505.9 NaN 602 1203 1804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1809 21.628 NaN 9659.5 35 0 1933.5 0.411 + 2775 DYDGYIFIKE 10 14 631.7979221066258 NaN 0 631.7979125976562 PEAK HCD FTMS 0 0 0 1808 1604.0294189453125 0.27269676792645586 1 -0.008211135864257812 1 Unmodified _DYDGYIFIKE_ REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88529.3 NaN 603 1204 1808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1811 21.636 NaN 188850 35 0 44767 0.411 + 2164 DIASPTFRRY 10 41 409.2156444695711 1224.6251040089132 3 409.2156982421875 MULTI HCD FTMS 0 0 0 1810 52567.77734375 0.17577079563618095 -13 0.13074684143066406 1 Unmodified _DIASPTFRRY_ nc|ENSG00000067798|Q8IVL0-3|NAV3 1.4551175022131473 0.4676015363898197 2 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.399907425543 825.399907425543 2.2184874961635614 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 - 11 + NaN NaN 159931.9 NaN 604 1205 1810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1813 21.645 NaN 98126 35 0 20698 0.327 -1 0 26 465.2195690622318 928.4245851912636 2 465.23260498046875 MULTI HCD FTMS 0 0 0 1812 9950.5 0.011920812048040855 55 -0.5371837615966797 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99074.2 NaN 605 1206 1812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1814 21.649 NaN 18478 35 0 4614.2 0.261 + -1 QLPAIVVLLI 10 12 560.8714959180229 NaN 0 560.8714599609375 PEAK HCD FTMS 0 0 0 1812 8054.96484375 0.6314917652419851 3 -0.028903961181640625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QLPAIVVLLI_ REV__ENST00000370713.5_1_1:82432165-82432204:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108117.7 NaN 606 1206 1812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1815 21.652 NaN 35779 35 0 11508 0.261 + -1 VQCNDDNLK 9 25 553.2505106151415 1104.4864682970829 2 553.250244140625 MULTI HCD FTMS 0 0 0 1812 4620.59375 0.15985446939229336 72 -0.7431526184082031 3 Carbamidomethyl (C) _VQC(Carbamidomethyl (C))NDDNLK_ REV__ENSG00000174130|ENST00000508254|TLR6;REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90903.6 NaN 607 1206 1812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1817 21.658 NaN 37162 35 0 5367.3 0.411 + 28088 THIRHHRF 8 32 552.3007638856229 1102.5869748380458 2 552.3003540039062 MULTI HCD FTMS 0 0 0 1816 5506.43505859375 0.9068241515193305 1 -0.008260726928710938 1 Unmodified _THIRHHRF_ REV__ENSG00000245680|ENST00000532828|ZNF585B 0.6903765706972694 0.5409681170271811 2 S 1 -1 1.2591 0 0 0.11419 0 0 532.8344246444896 479.6909578912719 1012.5253825357615 0 0 0 0 0 0 0 0 0 S 0.11419 - 1 + NaN NaN 111443.8 NaN 608 1207 1816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1820 21.673 NaN 41416 35 0 6101.4 0.411 + 4208 EVAPPEYHRK 10 36 613.3200205790454 1224.6254882248907 2 613.31982421875 MULTI HCD FTMS 0 0 0 1819 13594.693359375 0.438209175967053 -8 0.08514785766601562 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 5.40270961882225 0.4467063037482923 2 [W{I|L}]P 3 9 10.458 0 0 0.85394 0 0 0 825.4033297174436 825.4033297174436 10.45757490560675 0 0 0 0 0 0 0 0 [W{I|L}]P 0.85394 - 4 + NaN NaN 103163.9 NaN 609 1209 1819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1822 21.681 NaN 36151 35 0 4447.9 0.411 + -1 CWGEHTYF 8 36 550.2172554308281 NaN 0 550.217041015625 PEAK HCD FTMS 0 0 0 1821 6775.59375 0.4149628063802596 -88 0.8184986114501953 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 2 E 1 -1 1.5938 0 0 0.1451 0 0 683.0119817095093 283.3437899225219 966.3557716320313 0 0 0 0 0 0 0 0 0 E 0.1451 + + 1 + NaN NaN 91609 NaN 610 1210 1821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1824 21.689 NaN 16266 35 0 2912.4 0.327 + 32737 WQGWWHGW 8 14 571.7513742194301 1141.48819550566 2 571.7509765625 MULTI HCD FTMS 0 0 0 1823 5490.82568359375 0.32944932224068446 16 -0.1434917449951172 1 Unmodified _WQGWWHGW_ REV__ENST00000505994.1_1_4:120315985-120316138:-|nuORF 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95011 NaN 611 1211 1823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1825 21.694 NaN 20013 35 0 2878.8 0.261 + 21285 PRSTDEECVL 10 23 574.7660620668048 1147.5175712004095 2 574.7664794921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PRSTDEECVL_ REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF 2.9952420565917617 0.4594494122822477 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 106554 NaN 612 1211 1823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1828 21.707 NaN 58055 35 0 5897.8 0.411 -1 NPEHASVAM 9 44 486.21622525788825 970.4178975825765 2 486.2159118652344 MULTI HCD FTMS 0 0 0 1827 34658.93359375 0.3198682887838029 35 -0.31123924255371094 1 Oxidation (M) _NPEHASVAM(Oxidation (M))_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 34.40172386719151 0.0910440009062557 2 SVA{M(Oxidation (M))|F} 4 -1 49.68 0 0 5.1195 0 0 548.2352162091812 0 548.2352162091812 0 41.60850666067283 0 0 0 1.5 0 0.4247425010840047 0 SVA{M(Oxidation (M))|F} 5.1195 + + 41 NaN NaN 108233.1 NaN 613 1213 1827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1830 21.715 NaN 26044 35 0 5856.3 0.411 -1 RPLPRMCC 8 30 524.7460723548666 NaN 0 524.7460327148438 PEAK HCD FTMS 0 0 0 1829 1461.4068603515625 0.26867878079836605 1 -0.00804901123046875 1 Carbamidomethyl (C),Oxidation (M) _RPLPRM(Oxidation (M))C(Carbamidomethyl (C))C_ ENST00000278412.6_1_11:57100292-57100452:-|nuORF 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.29585 0 0 619.3964588193049 278.02231775455317 897.4187765738582 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.29585 + + 1 + NaN NaN 102662 NaN 614 1214 1829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1832 21.723 NaN 139860 35 0 20068 0.411 + 14025 KYTPPPHHI 9 54 545.2956430278737 1088.5767331225472 2 545.2957153320312 MULTI HCD FTMS 0 0 0 1831 71074.171875 0.2368372548592867 23 -0.20307159423828125 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 92.4914307365334 0.004460681868130716 2 [YK]T[YK]HH{I|L} 8 3 + 57.242 0 0 5.2584 5.2584 89.455 0 0 0 10.24735947860492 40.26974658523723 10.24735947860492 14.827796776480469 0 1.4247425010840047 0 0.6747425010840047 0.6861818737241735 [YK]T[YK]HH{I|L};[YT]K[YK]HH{I|L} 5.2584;3.8963 -;- 163 NaN NaN 131679.8 NaN 615 1215 1831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1834 21.731 NaN 34707 35 0 6576.2 0.327 -1 YCYMDICKYY 10 18 479.8552701116126 NaN 0 479.8547668457031 PEAK HCD FTMS 0 0 0 1833 6871.537109375 0.516008277893156 239 -2.4874191284179688 1 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))YM(Oxidation (M))DICKYY_ ENST00000475465.1_1_X:77158242-77158278:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91562.7 NaN 616 1216 1833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1835 21.736 NaN 40458 35 0 9904.4 0.261 -1 NTYRMNNEG 9 25 557.7324706138157 NaN 0 557.7322998046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _NTYRM(Oxidation (M))NNEG_ ENST00000574823.5_1_16:11935494-11935832:-|nuORF 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92184 NaN 617 1216 1833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1837 21.741 NaN 299500 35 0 29128 0.327 + 8523 HAGSELLQR 9 51 505.7722877717708 1009.5300226103416 2 505.7724304199219 MULTI HCD FTMS 0 0 0 1836 133937.25 0.03871078922107533 38 -0.3633747100830078 1 Unmodified _HAGSELLQR_ ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;nc|ENSG00000127191|Q12933-4|TRAF2 58.678817012210395 0.019429721296335044 2 EA[SG]H{I|L}{I|L}QR 9 2 + 70.032 0 0 6.9371 6.9371 88.15 0 0 0 50.36658945444961 16.478174818886373 16.478174818886373 6.478174818886373 0 1.3684151806525389 0 0 0.3494850021680094 EA[SG]H{I|L}{I|L}QR;E{[QS]|[NT]}H{I|L}{I|L}QR;EA[SG]H{I|L}{I|L}[AG]R;E{[QS]|[NT]}H{I|L}{I|L}[AG]R 6.9371;6.2954;6.025;5.378 -;-;-;- 110 + NaN NaN 146784.8 NaN 618 1217 1836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1838 21.745 NaN 262220 35 0 41233 0.261 + 2989 EAAGEVRAM 9 49 475.2239495703555 948.433346207511 2 475.2238464355469 MULTI HCD FTMS 0 0 0 1836 126906.8125 0.4826608914009488 23 -0.2065887451171875 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 51.629811660486645 0.02929079705179888 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 61.406 0 0 6.4745 6.4745 87.393 0 0 0 34.49478448944497 14.973024840566467 14.973024840566467 6.522496736287451 0 0.9802046884880937 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVR{[MS]|[{M(Oxidation (M))|F}A]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVR{[MS]|[{M(Oxidation (M))|F}A]};{[DA]|[EG]}AAQ[KQ]{[MS]|[{M(Oxidation (M))|F}A]};{[DA]|[EG]}V[DG]VR{[MS]|[{M(Oxidation (M))|F}A]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ[KQ]{[MS]|[{M(Oxidation (M))|F}A]};{[DA]|[EG]}V[NG][KQ]{[MS]|[{M(Oxidation (M))|F}A]} 6.4745;5.7868;2.267;1.5839;1.5588;1.349;0.87574;0.64082 +;-;-;-;-;-;-;- + 222 + NaN NaN 132769.5 NaN 619 1217 1836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1840 21.751 NaN 71798 35 0 14932 0.411 + -1 HPRMHGSPPP 10 36 564.7724197403246 NaN 0 564.7607421875 PEAK HCD FTMS 0 0 0 1839 3293.483642578125 0.631996481836596 21 -0.1884326934814453 1 Oxidation (M) _HPRM(Oxidation (M))HGSPPP_ REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF 3.944395688203298 0.33680843299986807 2 R 1 -1 5.4846 0 0 0.48642 0 0 234.13485178397144 734.2907288847392 968.4255806687106 0 0 0 0 0 0 0 0 0 R 0.48642 + + 1 + NaN NaN 115388.4 NaN 620 1218 1839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1842 21.759 NaN 757650 35 0 217360 0.411 + 4210 EVAPPEYHRK 10 52 409.2156444695711 1224.6251040089132 3 409.2156982421875 MULTI HCD FTMS 0 0 0 1841 295069.1875 0.9866223849535242 1 -0.008050918579101562 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 21.799462835604743 0.30720719660089946 2 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 33.689 0 0 2.7509 0 0 0 825.4000723152305 825.4000723152305 25.10529010026437 0 0 0 0 0.5941876774005248 1.154901959985743 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 2.7509 + + 16 + NaN NaN 320454 NaN 621 1219 1841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1844 21.767 NaN 13823 35 0 2512.2 0.411 + -1 GMVRKMPFEK 10 16 619.8207424931637 NaN 0 619.8211669921875 PEAK HCD FTMS 0 0 0 1843 2215.87158203125 0.25729713627769396 -12 0.10105323791503906 1 Oxidation (M) _GM(Oxidation (M))VRKMPFEK_ REV__PADI4|p.I381M|1|0.29|ENSG00000159339|chr1:17348036-17348036|C/G|missense_variant 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93839.1 NaN 622 1220 1843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1846 21.775 NaN 64010 35 0 14731 0.411 + 2624 DVAQPDQTR 9 37 515.2516125738078 1028.4886722144156 2 515.25146484375 MULTI HCD FTMS 0 0 0 1845 22831.931640625 0.858279707748978 -5 0.044017791748046875 1 Unmodified _DVAQPDQTR_ ENSG00000105202|ENST00000221801|FBL 15.248480904072842 0.22861284681709862 2 [DV]AQ 4 5 48.188 0 0 4.6853 0 0 0 612.274857931195 612.274857931195 48.187587626244124 0 0 0 0 1.5 1.6989700043360187 0 0 + [DV]AQ 4.6853 + + 27 NaN NaN 99112.8 NaN 623 1221 1845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1848 21.783 NaN 29224 35 0 4990.3 0.411 + -1 YMQRCKFG 8 28 553.2510986328125 NaN 0 553.2510986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))QRC(Carbamidomethyl (C))KFG_ REV__ENST00000465217.1_1_3:49008110-49012121:+|nuORF 0.7936320650641473 0.38822285293237185 2 {I|L} 1 -1 3.9794 0 0 0.36029 0 0 841.4713639630874 146.90810571842033 988.3794696815077 0 0 0 0 0 0 0 0 0 {I|L} 0.36029 - 1 + NaN NaN 102149 NaN 624 1222 1847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1850 21.791 NaN 54279 35 0 11497 0.327 + 4209 EVAPPEYHRK 10 24 613.3200205790454 1224.6254882248907 2 613.3200073242188 MULTI HCD FTMS 0 0 0 1849 20508.73828125 0.6610753964636455 6 -0.05774116516113281 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 4.715918219556657 0.45034159980724314 2 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.3983858697874 825.3983858697874 16.197887582883936 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 3 + NaN NaN 95183 NaN 625 1223 1849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1851 21.796 NaN 63777 35 0 12288 0.262 + 5643 FMVNVYFP 8 27 508.7489396660231 1015.4833263988462 2 508.7492980957031 MULTI HCD FTMS 0 0 0 1849 26754.78125 1 0 0 2 Unmodified _FMVNVYFP_ REV__ENSG00000134802|ENST00000395124|SLC43A3;REV__nc|ENSG00000134802|Q8NBI5-2|SLC43A3 2.577480529830294 0.5381683276125971 2 E 1 -1 5.4846 0 0 0.54009 0 0 328.09320296310244 555.3290499322874 883.4222528953899 0 0 0 0 0 0 0 0 0 E 0.54009 - 2 + NaN NaN 93304.3 NaN 626 1223 1849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1852 21.799 NaN 37031 35 0 7349.3 0.261 + -1 HEKVTNGY 8 21 495.2358925622592 NaN 0 495.2359619140625 PEAK HCD FTMS 0 0 0 1849 4598.12890625 0.47547544171349065 1 -0.016592025756835938 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))HEKVTNGY_ REV__ENST00000367435.3_1_1:193221653-193221731:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90380.6 NaN 627 1223 1849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1853 21.802 NaN 31365 35 0 11822 0.261 + 22107 QIFSGTSKR 9 20 512.2829837097495 1022.551414486299 2 512.28271484375 MULTI HCD FTMS 0 0 0 1849 8482.3515625 0.7252911522012635 -2 0.016107559204101562 4 Unmodified _QIFSGTSKR_ ENSG00000123609|ENST00000243346|NMI 3.2813086475875832 0.32614229037259 2 R 1 8 16.99 0 0 1.6615 0 0 848.4400233503599 0 848.4400233503599 0 6.532125137753438 0 0 0 0 0 0 0 + R 1.6615 + + 2 + NaN NaN 101798.3 NaN 628 1223 1849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1855 21.808 NaN 20921 35 0 3820.2 0.327 -1 KVRCFFCY 8 18 590.2747891971474 1178.5350254610946 2 590.2752685546875 MULTI HCD FTMS 0 0 0 1854 1708.9307861328125 0.224027085467925 -3 0.0326995849609375 1 2 Carbamidomethyl (C) _KVRC(Carbamidomethyl (C))FFC(Carbamidomethyl (C))Y_ ENSG00000101197|ENST00000217169|BIRC7;nc|ENSG00000101197|Q96CA5-2|BIRC7 0.7936320650641473 0.540814922690045 2 A 1 -1 5.4846 0 0 0.46537 0 0 910.0342147694915 194.43406091861564 1104.4682756881073 0 0 0 0 0 0 0 0 0 A 0.46537 - 2 + NaN NaN 93815.3 NaN 629 1224 1854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1857 21.815 NaN 61738 35 0 13794 0.327 -1 RPMRCWGW 8 20 574.7660620668048 1147.5175712004095 2 574.7659301757812 MULTI HCD FTMS 0 0 0 1856 31141.69140625 0.8205780801374308 -2 0.024202346801757812 1 Carbamidomethyl (C) _RPMRC(Carbamidomethyl (C))WGW_ TXNDC15|p.R11Afs*82|1|0.32|ENSG00000113621|chr5:134874455-134874455|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 2 [RP]H 3 -1 13.072 0 0 1.1392 0 0 0 754.2790621393186 754.2790621393186 7.5874185669681555 0 0 0 0 0.5 0 0 0 [RP]H 1.1392 - 7 + NaN NaN 113765.4 NaN 630 1225 1856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1858 21.82 NaN 74069 35 0 10555 0.261 + 2573 DTIENVKAK 9 34 509.28224757797426 1016.5499422227485 2 509.28204345703125 MULTI HCD FTMS 0 0 0 1856 23523.23828125 0.14567193454257707 -13 0.11603164672851562 2 Unmodified _DTIENVKAK_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant 5.296884461304476 0.3108627248283497 2 DT{I|L}E 4 5 25.918 0 0 2.5496 0 0 0 555.3260592096311 555.3260592096311 25.9176003468815 0 0 0 0 0 0 0 0 + DT{I|L}E 2.5496 + + 7 + NaN NaN 101725.2 NaN 631 1225 1856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1861 21.833 NaN 35456 35 0 5160.9 0.411 + 10157 IFSIVYTMF 9 26 560.7907352435981 1119.566917553996 2 560.7902221679688 MULTI HCD FTMS 0 0 0 1860 7129.9697265625 0.2960733312105744 -8 0.07391738891601562 1 Unmodified _IFSIVYTMF_ REV__ENSG00000141338|ENST00000586539|ABCA8;REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF;REV__nc|ENSG00000141338|O94911-1|ABCA8 4.3292370932331545 0.3181982124262546 2 {[CP]|[EA]}{M(Oxidation (M))|F}P 4 -1 16.198 0 0 1.4468 0 0 0 672.3443087213499 672.3443087213499 16.197887582883936 0 0 0 0 0 0 0 0 {[CP]|[EA]}{M(Oxidation (M))|F}P 1.4468 - 3 + NaN NaN 117210.4 NaN 632 1227 1860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1863 21.841 NaN 77686 35 0 10660 0.411 + 14026 KYTPPPHHI 9 45 545.2956430278737 1088.5767331225472 2 545.2955322265625 MULTI HCD FTMS 0 0 0 1862 29621.5703125 0.09870662172149076 36 -0.3809375762939453 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 58.678817012210395 0.019429721296335044 2 KYTP 4 5 42.612 0 0 3.9145 0 0 0 596.2951143854124 596.2951143854124 16.642951979966142 0 0 0 0 1 0 0.6694451763165201 0 + KYTP 3.9145 + + 13 + NaN NaN 108132.3 NaN 633 1228 1862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1865 21.849 NaN 28871 35 0 5446.6 0.411 -1 GFCYLIYF 8 23 541.7556110070102 NaN 0 541.7559204101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _GFC(Carbamidomethyl (C))YLIYF_ ENSG00000135144|ENST00000548759|DTX1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90939.8 NaN 634 1229 1864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1868 21.865 NaN 149750 35 0 26243 0.327 -1 EAAGEVRAM 9 39 475.2239495703555 948.433346207511 2 475.223876953125 MULTI HCD FTMS 0 0 0 1867 74832.3515625 0.28460764870905125 37 -0.42094993591308594 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 27.628801355627647 0.12213550946336599 2 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 38.364 0 0 4.0449 4.0449 82.517 0 0 0 9.947274948966943 5.6424927368726046 5.6424927368726046 3.4678748622465676 0 0.25 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]} 4.0449;3.6793 +;- + 117 + NaN NaN 106652.9 NaN 635 1231 1867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1869 21.869 NaN 233870 35 0 23702 0.261 + 19585 NTELHLQR 8 40 505.7722877717708 1009.5300226103416 2 505.7724304199219 MULTI HCD FTMS 0 0 0 1867 94670.59375 0.027361868338272595 52 -0.5810070037841797 2 Unmodified _NTELHLQR_ REV__ENSG00000153820|ENST00000392056|SPHKAP;REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP;REV__SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant 15.847184025352803 0.47719562709667024 2 EA[SG]H{I|L}{I|L}QR 9 -1 + 53.65 0 0 5.3144 5.3144 85.421 0 0 0 38.95750937337162 16.478174818886373 16.478174818886373 6.478174818886373 0 0.3807196863200844 0 0 0 EA[SG]H{I|L}{I|L}QR;E{[QS]|[NT]}H{I|L}{I|L}QR;EA[SG]H{I|L}{I|L}[AG]R;E{[QS]|[NT]}H{I|L}{I|L}[AG]R 5.3144;4.6727;4.4023;3.7552 -;-;-;- 58 + NaN NaN 119831.2 NaN 636 1231 1867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1871 21.875 NaN 68831 35 0 12887 0.411 -1 HPYQPDPKM 9 39 564.7607953461294 1127.5070377590587 2 564.760498046875 MULTI HCD FTMS 0 0 0 1870 22143.056640625 0.6413301750046273 12 -0.104736328125 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 13.90604991867851 0.24021115267848145 2 RSE 3 -1 34.693 0 0 3.0769 0 0 737.3130506888501 0 737.3130506888501 0 34.69273760456403 0 0 0 1 0 0 0 RSE 3.0769 - 12 NaN NaN 111561.5 NaN 637 1232 1870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1873 21.883 NaN 263860 35 0 69158 0.327 + 4211 EVAPPEYHRK 10 35 409.2156444695711 1224.6251040089132 3 409.215576171875 MULTI HCD FTMS 0 0 0 1872 88872.140625 0.29716163887617875 15 -0.1356048583984375 1 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 1.214830529360525 0.46887341353674167 2 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.4005999867219 825.4005999867219 10.713337517843655 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 7 + NaN NaN 138842.7 NaN 638 1233 1872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1874 21.887 NaN 36777 35 0 9345.2 0.261 + 35117 YVDYLDDPD 9 21 557.7324706138157 NaN 0 557.732177734375 PEAK HCD FTMS 0 0 0 1872 4638.17724609375 0.6433978143138769 8 -0.07305908203125 2 Unmodified _YVDYLDDPD_ REV__ENSG00000132692|ENST00000329117|BCAN;REV__nc|ENSG00000132692|Q96GW7-2|BCAN 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80196.5 NaN 639 1233 1872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1876 21.893 NaN 61088 35 0 15778 0.326 + 21078 PMHSISSAK 9 25 479.2447113330505 956.474869732901 2 479.2444763183594 MULTI HCD FTMS 0 0 0 1875 7413.97998046875 0.16032332582530898 -8 0.06720733642578125 1 Unmodified _PMHSISSAK_ REV__PCSK2|p.E251K|1|0.09|ENSG00000125851|chr20:17436749-17436749|G/A|missense_variant 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101430.2 NaN 640 1234 1875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1877 21.897 NaN 12318 35 0 3545.5 0.261 + -1 DFICRHLHA 9 14 584.789335484794 NaN 0 584.7890014648438 PEAK HCD FTMS 0 0 0 1875 6406.181640625 0.8268839478684444 40 -0.4568462371826172 2 Carbamidomethyl (C) _DFIC(Carbamidomethyl (C))RHLHA_ REV__ENSG00000004777|ENST00000007510|ARHGAP33;REV__nc|ENSG00000004777|O14559-11|ARHGAP33;REV__nc|ENSG00000004777|O14559-12|ARHGAP33 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79460.6 NaN 641 1234 1875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1880 21.91 NaN 29156 35 0 4981.2 0.411 + 22108 QIFSGTSKR 9 31 512.2829837097495 1022.551414486299 2 512.2839965820312 MULTI HCD FTMS 0 0 0 1879 4867.0615234375 0.4161625033056299 11 -0.09804153442382812 1 Unmodified _QIFSGTSKR_ ENSG00000123609|ENST00000243346|NMI 1.4819007175156935 0.3397831423917744 2 A 1 9 3.0989 0 0 0.30306 0 0 591.8578547712583 356.62803064517817 948.4858854164365 0 0 0 0 0 0 0 0 0 A 0.30306 - 2 + NaN NaN 94773.6 NaN 642 1236 1879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1882 21.918 NaN 24916 35 0 4210.6 0.411 + 32864 WWWRWLRRRR 10 20 552.9803174881041 NaN 0 553.2509155273438 PEAK HCD FTMS 0 0 0 1881 2018.994140625 0.9533446953557734 -2 0.015537261962890625 1 Unmodified _WWWRWLRRRR_ REV__chr12:54283228-54283827|521|28.51|0.0|21.44|+|1|HNRNPA1,HNRNPA1|2 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105030.5 NaN 643 1237 1881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1884 21.926 NaN 58290 35 0 12341 0.327 -1 NAAHQEALM 9 28 500.7294615782505 999.444370223301 2 500.7295227050781 MULTI HCD FTMS 0 0 0 1883 26845.51171875 0.12198165794569248 -25 0.21912002563476562 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 9.38312468134398 0.279288223203164 2 A{I|L}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.6218 0 0 650.2762928693375 0 650.2762928693375 0 30.713337517843655 0 0 0 1 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.6218 + + 14 NaN NaN 99981.7 NaN 644 1238 1883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1885 21.931 NaN 19054 35 0 3928.8 0.261 -1 MLRCLYHW 8 13 590.2747891971474 1178.5350254610946 2 590.2750854492188 MULTI HCD FTMS 0 0 0 1883 5186.5166015625 0.6799106244720396 11 -0.10018157958984375 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))LRCLYHW_ ENSG00000072756|ENST00000251607|TRNT1;ENST00000465998.1_1_3:3170712-3170940:+|nuORF;ENST00000469632.1_1_3:3170712-3173035:+|nuORF;nc|ENSG00000072756|Q96Q11-2|TRNT1;nc|ENSG00000072756|Q96Q11-3|TRNT1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84740.4 NaN 645 1238 1883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1886 21.934 NaN 75978 35 0 11537 0.264 + 17788 MFDCTNFWH 9 37 400.82576976327493 NaN 0 400.3504638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MFDCTNFWH_ REV__ENST00000397574.6_1_11:615555-615988:-|nuORF 0.45834013312273997 0.29302578994899664 2 R 1 -1 5.4846 0 0 0.68588 0 0 493.5675113509655 146.94658838443596 640.5140997354015 0 0 0 0 0 0 0 0 0 R 0.68588 - 1 + NaN NaN 102613.9 NaN 646 1238 1883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1888 21.94 NaN 32657 35 0 6756.2 0.411 -1 RPMRCWGW 8 25 574.7660620668048 1147.5175712004095 2 574.7657470703125 MULTI HCD FTMS 0 0 0 1887 15908.8330078125 0.41919494598028806 12 -0.11356163024902344 1 Carbamidomethyl (C) _RPMRC(Carbamidomethyl (C))WGW_ TXNDC15|p.R11Afs*82|1|0.32|ENSG00000113621|chr5:134874455-134874455|C/-|frameshift_variant 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99715.9 NaN 647 1239 1887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1890 21.948 NaN 183980 35 0 23966 0.411 + 2574 DTIENVKAK 9 60 509.28224757797426 1016.5499422227485 2 509.2822570800781 MULTI HCD FTMS 0 0 0 1889 121308.75 0.7512265138906212 2 -0.015626907348632812 1 Unmodified _DTIENVKAK_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant 103.41943736471063 0.004016698775839292 2 DT{I|L}ENVKAK 9 0 + 93.427 0 0 9.1906 9.1906 93.554 0 0 0 73.9625938194564 10.642492736872597 10.642492736872597 9.208187539523749 0 1.8098943791441968 1.5228787452803376 0.4247425010840047 0.4247425010840047 + + DT{I|L}ENVKAK;DT{I|L}EGGVKAK;{[QN]|[E{I|L}]|[KN]}SENVKAK;[{I|L}T]DENVKAK;{[ES]|[DT]|[{I|L}C]}{I|L}ENVKAK 9.1906;8.2847;4.6594;4.6594;4.5152 +;-;-;-;+ + 122 + NaN NaN 147210.4 NaN 648 1240 1889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1893 21.963 NaN 43919 35 0 6035.9 0.411 + 14027 KYTPPPHHI 9 42 545.2956430278737 1088.5767331225472 2 545.29541015625 MULTI HCD FTMS 0 0 0 1892 20340.15234375 0.06777857156022525 50 -0.5689697265625 1 Unmodified _KYTPPPHHI_ ENSG00000168653|ENST00000372969|NDUFS5 34.40172386719151 0.0910440009062557 2 KYTP 4 5 41.23 0 0 3.7875 0 0 0 596.3007296197874 596.3007296197874 15.260847058321687 0 0 0 0 1 0 0.3807196863200844 0 + KYTP 3.7875 + + 14 + NaN NaN 104334.1 NaN 649 1242 1892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1895 21.971 NaN 28601 35 0 5711.1 0.411 + -1 YQCIAAAMR 9 25 542.2573084876769 NaN 0 542.2568359375 PEAK HCD FTMS 0 0 0 1894 4875.9140625 1 0 0 1 Carbamidomethyl (C) _YQC(Carbamidomethyl (C))IAAAMR_ REV__ENSG00000187105|ENST00000553558|HEATR4 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100888.1 NaN 650 1243 1894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1898 21.987 NaN 117800 35 0 17679 0.411 + 2990 EAAGEVRAM 9 52 475.2239495703555 948.433346207511 2 475.2236633300781 MULTI HCD FTMS 0 0 0 1897 55241.8046875 0.21009950662078022 51 -0.5881862640380859 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 51.629811660486645 0.02929079705179888 2 {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F} 9 0 + 60.032 0 0 6.3296 6.3296 85.945 0 0 0 31.61597682053261 14.09256854528806 14.09256854528806 3.4678748622465605 0 1.0189301784845295 0 0 0 + + {[CP]|[EA]}AGEVRA{M(Oxidation (M))|F};{[CP]|[EA]}QEVRA{M(Oxidation (M))|F};{[DA]|[EG]}AAEVRA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AEVRA{M(Oxidation (M))|F};{[DA]|[EG]}V[DG]VRA{M(Oxidation (M))|F};{[DA]|[EG]}AV{[CP]|[EA]}RA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[CP]|[EA]}RA{M(Oxidation (M))|F};{[DA]|[EG]}VA{[CP]|[EA]}RA{M(Oxidation (M))|F} 6.3296;5.964;3.8013;3.4357;2.8127;2.6676;2.302;2.094 +;-;-;-;-;-;-;- + 237 + NaN NaN 123958.1 NaN 651 1245 1897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1900 21.995 NaN 49760 35 0 10604 0.327 -1 HPYQPDPKM 9 19 564.7607953461294 1127.5070377590587 2 564.7609252929688 MULTI HCD FTMS 0 0 0 1899 19227.6015625 0.5568897408849023 26 -0.3389739990234375 1 Oxidation (M) _HPYQPDPKM(Oxidation (M))_ ENSG00000141582|ENST00000269397|CBX4 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90320.7 NaN 652 1246 1899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1901 21.999 NaN 24438 35 0 3718.5 0.261 -1 HDECTPQQTM 10 22 624.2362970119474 NaN 0 624.2361450195312 PEAK HCD FTMS 0 0 0 1899 8618.103515625 0.8659309652416303 43 -0.5112552642822266 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91272.6 NaN 653 1246 1899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1902 22.003 NaN 13596 35 0 3413.5 0.261 + -1 KRRCCCCC 8 15 601.72705078125 NaN 0 601.72705078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 4 Carbamidomethyl (C) _KRRC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C_ REV__ENSG00000183255|ENST00000330938|PTTG1IP 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92385.7 NaN 654 1246 1899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1904 22.008 NaN 153480 35 0 40862 0.327 + -1 CHGSYSSADKC 11 44 405.49030089248214 1213.4490732776464 3 405.4902038574219 MULTI HCD FTMS 0 0 0 1903 40513.7421875 0.31872860344164217 -8 0.06865692138671875 1 Carbamidomethyl (C) _CHGSYSSADKC(Carbamidomethyl (C))_ REV__ENST00000467530.5_1_1:85959602-85959857:-|nuORF 0.40826533853263924 0.41713015341995335 2 {[CP]|[EA]}D 3 -1 10.458 0 0 0.86181 0 0 0 895.3180905827613 895.3180905827613 3.4678748622465623 0 0 0 0 0 0 0 0 {[CP]|[EA]}D 0.86181 - 17 + NaN NaN 106121.2 NaN 655 1247 1903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1905 22.013 NaN 81554 35 0 14519 0.261 + 4212 EVAPPEYHRK 10 32 409.2156444695711 1224.6251040089132 3 409.2154846191406 MULTI HCD FTMS 0 0 0 1903 11688.3212890625 0.03908222177999488 29 -0.36190032958984375 2 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 2.6312355333042263 0.46137615667793275 2 {NN|[MP]|[D{I|L}]|[EV]}AP 4 6 16.198 0 0 1.3227 0 0 0 825.3996197681967 825.3996197681967 16.197887582883936 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.3227 + + 4 + NaN NaN 108395.7 NaN 656 1247 1903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1907 22.018 NaN 83873 35 0 25803 0.411 -1 GNGHLVMLT 9 39 479.2447113330505 956.474869732901 2 479.2442932128906 MULTI HCD FTMS 0 0 0 1906 37894.48828125 0.819447908910334 6 -0.07275962829589844 1 Oxidation (M) _GNGHLVM(Oxidation (M))LT_ ENST00000394808.2_1_6:53072259-53072454:-|nuORF 7.289230182591677 0.29575926068275815 2 {NN|[MP]|[D{I|L}]|[EV]}H 3 -1 13.512 0 0 1.4127 0 0 0 588.3017672174436 588.3017672174436 13.51219677964764 0 0 0 0 0.3054621874040891 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}H 1.4127 - 2 + NaN NaN 112796.3 NaN 657 1248 1906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1909 22.026 NaN 65400 35 0 20352 0.327 -1 WECCSRMW 8 33 607.7314540597641 1213.4483551863282 2 607.7318115234375 MULTI HCD FTMS 0 0 0 1908 21488.484375 0.43793808819262087 -7 0.06301116943359375 1 2 Carbamidomethyl (C) _WEC(Carbamidomethyl (C))C(Carbamidomethyl (C))SRMW_ ENST00000374721.7_1_10:35500449-35500728:+|nuORF 0.6014990680409731 0.5410999795511968 2 T 1 -1 3.9794 0 0 0.32794 0 0 605.701420227147 503.6624849908813 1109.3639052180283 0 0 0 0 0 0 0 0 0 T 0.32794 - 4 + NaN NaN 99934.3 NaN 658 1249 1908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1910 22.031 NaN 22452 35 0 6113 0.261 + -1 VCRQKSEYY 9 14 616.7901418360132 1231.5657307388262 2 616.789306640625 MULTI HCD FTMS 0 0 0 1908 9196.1669921875 0.5329824103848109 -7 0.06301116943359375 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))RQKSEYY_ REV__ENSG00000183378|ENST00000533663|OVCH2;REV__nc|ENSG00000183378|Q7RTZ1|OVCH2 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90836.1 NaN 659 1249 1908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1911 22.034 NaN 23376 35 0 5538.5 0.261 + -1 TTMDELMEL 9 15 557.7357983169265 1113.457043700653 2 557.7349853515625 MULTI HCD FTMS 0 0 0 1908 4080.216796875 0.2209537643784292 -9 0.07863807678222656 3 2 Oxidation (M) _TTM(Oxidation (M))DELM(Oxidation (M))EL_ REV__ENSG00000127481|ENST00000375254|UBR4;REV__nc|ENSG00000127481|Q5T4S7-2|UBR4;REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-4|UBR4 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86551.8 NaN 660 1249 1908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1912 22.038 NaN 34321 35 0 11139 0.261 + 23392 RLAVEEEEE 9 15 552.264906075682 1102.515259218164 2 552.7666625976562 MULTI HCD FTMS 0 0 0 1908 4056.781982421875 0.428211931131407 -7 0.06301116943359375 4 Unmodified _RLAVEEEEE_ REV__CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant;REV__ENSG00000111642|ENST00000544040|CHD4;REV__nc|ENSG00000111642|Q14839-2|CHD4 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89157.6 NaN 661 1249 1908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1914 22.043 NaN 29028 35 0 5028.4 0.327 + 23627 RPPYPYPC 8 23 496.73588768843456 991.4572224436691 2 497.23724365234375 MULTI HCD FTMS 0 0 0 1913 2117.7568359375 0.4102242858237323 1 -0.0101165771484375 1 Unmodified _RPPYPYPC_ REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF 0.7936320650641473 0.540814922690045 2 D 1 -1 3.9794 0 0 0.40137 0 0 495.63652649815975 377.76902185611567 873.4055483542754 0 0 0 0 0 0 0 0 0 D 0.40137 - 1 + NaN NaN 82891 NaN 662 1250 1913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1915 22.047 NaN 36347 35 0 10308 0.261 + 8871 HMYWLLEC 8 18 547.7427154209652 1093.4708779087302 2 547.7423706054688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _HMYWLLEC_ REV__ENSG00000132801|ENST00000255152|ZSWIM3 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88858.6 NaN 663 1250 1913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1917 22.053 NaN 179850 35 0 48511 0.412 + 18762 NAAHQEALM 9 56 500.7294615782505 999.444370223301 2 500.7294006347656 MULTI HCD FTMS 0 0 0 1916 122306.390625 0.5557404329667095 -12 0.11356163024902344 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 70.33199760932243 0.0089807860198535 2 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 77.263 0 0 7.7306 7.7306 87.376 0 0 0 0.8265059764113403 0.8265059764113403 0.8265059764113403 0.8265059764113403 0 2.6677353201839438 1.2218487496163564 0.3494850021680094 0.7302046884880937 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AHEQA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AHE[AG]A{I|L}{M(Oxidation (M))|F} 7.7306;7.6479;6.8093;6.7266 +;-;-;- + 135 NaN NaN 156911.8 NaN 664 1251 1916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1919 22.061 NaN 88532 35 0 38718 0.327 + 33124 YDYNDDYDESY 11 29 487.8379550030169 NaN 0 487.875732421875 PEAK HCD FTMS 0 0 0 1918 1926.73828125 0.6331507350463556 -3 0.03483772277832031 1 Unmodified _YDYNDDYDESY_ REV__ENSG00000067177|ENST00000373542|PHKA1;REV__nc|ENSG00000067177|P46020-2|PHKA1;REV__nc|ENSG00000067177|P46020-3|PHKA1 0.08335046087909445 0.3418837022149213 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98300.6 NaN 665 1252 1918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1920 22.066 NaN 80964 35 0 11087 0.261 -1 0 39 400.35009765625 NaN 0 400.35009765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 G 1 -1 4.6041 0 0 0.57865 0 0 288.4751745099625 447.14939294986567 735.6245674598282 0 0 0 0 0 0 0 0 0 G 0.57865 - 1 + NaN NaN 95352.1 NaN 666 1252 1918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1922 22.071 NaN 94458 35 0 19888 0.327 + 27697 TANQAPSQP 9 38 457.2221860364309 912.4298191396618 2 457.22216796875 MULTI HCD FTMS 0 0 0 1921 65440.046875 0.8376703789340899 -5 0.05285835266113281 1 Unmodified _TANQAPSQP_ REV__ENSG00000183495|ENST00000389561|EP400;REV__EP400-SFSWAP|1|fusion;REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;REV__nc|ENSG00000183495|Q96L91-3|EP400;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__nc|ENSG00000183495|Q96L91-5|EP400;REV__nc|ENSG00000183495|Q96L91|EP400 17.11289562659939 0.2125047172822487 2 [TA]AS 4 -1 47.435 0 0 5.1988 0 0 0 579.2513521783811 579.2513521783811 44.987737688117235 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 [TA]AS 5.1988 - 16 + NaN NaN 94600.4 NaN 667 1253 1921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1923 22.075 NaN 43054 35 0 5515.9 0.261 + 2575 DTIENVKAK 9 31 509.28224757797426 1016.5499422227485 2 509.28204345703125 MULTI HCD FTMS 0 0 0 1921 35734.34375 0.22129142771219396 15 -0.21452713012695312 2 Unmodified _DTIENVKAK_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant 10.799506525563784 0.2670509983294061 2 DT{I|L}E 4 5 31.938 0 0 3.1418 0 0 0 555.3280733697874 555.3280733697874 31.938200260161125 0 0 0 0 0 0 0 0 + DT{I|L}E 3.1418 + + 7 + NaN NaN 93831.9 NaN 668 1253 1921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1924 22.079 NaN 29707 35 0 4129.2 0.261 + 9641 HTVYMWDY 8 23 557.7357983169265 1113.457043700653 2 557.7365112304688 MULTI HCD FTMS 0 0 0 1921 11262.271484375 0.609879671548426 -5 0.05285835266113281 3 Unmodified _HTVYMWDY_ REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88992.4 NaN 669 1253 1921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1925 22.082 NaN 46258 35 0 6080.6 0.261 -1 FSAWIGMLY 9 22 552.264906075682 1102.515259218164 2 552.26513671875 MULTI HCD FTMS 0 0 0 1921 6158.93994140625 0.4048598229832853 -6 0.06298065185546875 4 Oxidation (M) _FSAWIGM(Oxidation (M))LY_ ENST00000375204.2_1_9:100053158-100058044:+|nuORF;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF 3.944395688203298 0.32111559684428237 2 G{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 4 -1 16.198 0 0 1.4692 0 0 604.3062000959 0 604.3062000959 0 16.197887582883936 0 0 0 0 0 0 0 G{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 1.4692 - 2 NaN NaN 89009.2 NaN 670 1253 1921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1926 22.086 NaN 15575 35 0 4703.1 0.261 + 34773 YQPFSYKLC 9 16 574.776379264122 1147.538205595044 2 574.7657470703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YQPFSYKLC_ AMY2A|p.V80F|1|0.39|ENSG00000243480|chr1:103618023-103618023|G/T|missense_variant 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104327.6 NaN 671 1253 1921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1928 22.091 NaN 29035 35 0 5678.8 0.327 + 33699 YKTPHIPPH 9 25 545.2956430278737 1088.5767331225472 2 545.2952270507812 MULTI HCD FTMS 0 0 0 1927 6212.07958984375 0.020700232422173365 62 -0.6694622039794922 1 Unmodified _YKTPHIPPH_ REV__ENSG00000177302|ENST00000321105|TOP3A;REV__nc|ENSG00000177302|Q13472-2|TOP3A;REV__nc|ENSG00000177302|Q13472-3|TOP3A 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90838.8 NaN 672 1254 1927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1929 22.096 NaN 22464 35 0 4683.3 0.261 + 21876 QCNMNDEAE 9 14 527.1850694869476 1052.355586040695 2 527.1851806640625 MULTI HCD FTMS 0 0 0 1927 4719.22119140625 0.5008709433582096 -11 0.11971282958984375 2 Unmodified _QCNMNDEAE_ REV__ENSG00000100028|ENST00000215829|SNRPD3;REV__ENST00000468770.1_1_22:24953642-24953888:+|nuORF;REV__nc|ENSG00000286070|P62318-2|SNRPD3 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89554.1 NaN 673 1254 1927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1930 22.099 NaN 20185 35 0 3019.5 0.261 + -1 SGDSHSCMFQ 10 20 586.2105653191825 1170.4065777051649 2 586.7119750976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _SGDSHSC(Carbamidomethyl (C))M(Oxidation (M))FQ_ REV__ENSG00000145087|ENST00000471454|STXBP5L;REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L 0.4007161486938917 0.47318265037741464 2 A 1 -1 3.0989 0 0 0.26477 0 0 616.2034659881712 480.14646326236567 1096.349929250537 0 0 0 0 0 0 0 0 0 A 0.26477 - 1 + NaN NaN 91990.3 NaN 674 1254 1927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1932 22.105 NaN 200510 35 0 23782 0.327 + 25250 SASSVTVTR 9 42 454.24570597836276 906.4768590235255 2 454.2454528808594 MULTI HCD FTMS 0 0 0 1931 83553.9140625 0.21485824729012926 -10 0.11759376525878906 1 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 55.50274090549119 0.023872834264864425 2 {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 59.173 0 0 6.5278 6.5278 94.292 0 0 0 45.23264663105415 7.147642715192504 7.147642715192504 59.17280924645823 0 1.4802046884880937 1.6989700043360187 0.4247425010840047 0 + + {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6.5278 + + 78 + NaN NaN 131645.5 NaN 675 1255 1931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1933 22.109 NaN 51822 35 0 9775.1 0.261 -1 0 18 485.3586279650348 484.35135149843484 1 485.3583679199219 MULTI HCD FTMS 0 0 0 1931 13402.8525390625 0.1710278824182335 23 -0.28326416015625 2 NaN NaN 2 Q 1 -1 8.2268 0 0 1.6985 0 0 55.103378941597335 298.16501794986567 353.268396891463 0 0 0 0 0 0.4247425010840047 0 0 0 Q 1.6985 - 1 + NaN NaN 107529.3 NaN 676 1255 1931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1935 22.115 NaN 157090 35 0 44618 0.327 + -1 EEGQYCWW 8 29 579.2208490857186 1156.427145238237 2 579.2211303710938 MULTI HCD FTMS 0 0 0 1934 57344.09375 0.5469015159959538 -7 0.08828926086425781 1 Carbamidomethyl (C) _EEGQYC(Carbamidomethyl (C))WW_ REV__nc|ENSG00000156504|Q7Z309-4|PABIR2;REV__nc|ENSG00000156504|Q7Z309-5|PABIR2 2.577480529830294 0.5381683276125971 2 C(Carbamidomethyl (C))[TA][HQ]YR 7 -1 11.471 0 0 0.9919 0 0 0 237.00055872135002 237.00055872135002 7.569619513137055 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C))[TA][HQ]YR 0.9919 - 17 + NaN NaN 108850.9 NaN 677 1256 1934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1936 22.119 NaN 93131 35 0 13995 0.262 + 23908 RTCPVRMS 8 41 475.23930554572854 NaN 0 475.2236633300781 PEAK HCD FTMS 0 0 0 1934 1457.396240234375 0.3710896000459519 1 -0.01721954345703125 2 Unmodified _RTCPVRMS_ ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant 3.944395688203298 0.38822285293237185 2 AGEVR 5 6 27.959 0 0 2.9478 0 0 200.10986057848203 233.06037317447502 433.1702337529571 0 0 0 0 0 0 0 0 0 AGEVR 2.9478 - 34 + NaN NaN 97759.9 NaN 678 1256 1934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1937 22.123 NaN 35406 35 0 6591.2 0.261 -1 WKMEFDTR 8 16 564.7607953461294 1127.5070377590587 2 564.76025390625 MULTI HCD FTMS 0 0 0 1934 15612.0595703125 0.45217266337302625 36 -0.41766929626464844 3 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87506.9 NaN 679 1256 1934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1939 22.132 NaN 16605 35 0 5008.1 0.326 + -1 QCCCPKFCS 9 14 623.7264643676972 NaN 0 623.7274780273438 PEAK HCD FTMS 0 0 0 1938 5914.3564453125 1 0 0 1 4 Carbamidomethyl (C) _QC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))PKFC(Carbamidomethyl (C))S_ REV__ENSG00000204571|ENST00000398530|KRTAP5-11 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96976.7 NaN 680 1257 1938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1940 22.136 NaN 14421 35 0 1927.9 0.261 + 21286 PRSTDEECVL 10 17 574.7651955229655 NaN 0 574.7767333984375 PEAK HCD FTMS 0 0 0 1938 2095.837646484375 0.6576923925564787 2 -0.0265045166015625 2 Unmodified _PRSTDEECVL_ REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89464.5 NaN 681 1257 1938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1942 22.142 NaN 291960 35 0 90179 0.327 + -1 SADEYWFHC 9 46 405.49030089248214 1213.4490732776464 3 405.4903259277344 MULTI HCD FTMS 0 0 0 1941 109020.40625 0.8576823555298233 3 -0.04000091552734375 1 Carbamidomethyl (C) _SADEYWFHC(Carbamidomethyl (C))_ REV__ENSG00000163492|ENST00000443758|CCDC141;REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 1.0714618166137932 0.3428945748894048 2 [C(Carbamidomethyl (C))H][PG]Q 5 -1 11.963 0 0 0.98584 0 0 0 631.1963016314152 631.1963016314152 1.5051499783199045 0 0 0 0 0 1.3010299956639813 0 0 [C(Carbamidomethyl (C))H][PG]Q 0.98584 - 43 NaN NaN 131381.5 NaN 682 1258 1941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1943 22.146 NaN 35683 35 0 5252.2 0.261 + 26675 SYAKSTQRF 9 23 544.280000152682 1086.5454473721638 2 544.2800903320312 MULTI HCD FTMS 0 0 0 1941 7695.326171875 0.4436375784682573 -3 0.03729438781738281 2 Unmodified _SYAKSTQRF_ ENST00000430580.6_1_1:16939836-16939869:-|nuORF 2.9952420565917617 0.3283108881486655 2 S 1 8 3.9794 0 0 0.36624 0 0 449.2261506071796 547.2641695611936 996.4903201683733 0 0 0 0 0 0 0 0 0 + S 0.36624 + + 5 + NaN NaN 95518.8 NaN 683 1258 1941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1944 22.15 NaN 38559 35 0 5291 0.261 -1 0 21 479.2447113330505 956.474869732901 2 479.24481201171875 MULTI HCD FTMS 0 0 0 1941 5563.9111328125 0.1203165829633875 16 -0.20769500732421875 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106878 NaN 684 1258 1941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1945 22.153 NaN 32820 35 0 11584 0.261 + 28863 TVRGEPAATR 10 20 529.2905025530241 1056.5664521728481 2 529.7927856445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _TVRGEPAATR_ REV__ENST00000343820.9_1_18:3449712-3450399:+|nuORF;REV__ENST00000407501.6_1_18:3449895-3450350:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86614.5 NaN 685 1258 1941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1947 22.158 NaN 70615 35 0 24795 0.326 -1 WECCSRMW 8 24 607.7314540597641 1213.4483551863282 2 607.7319946289062 MULTI HCD FTMS 0 0 0 1946 30323.380859375 0.6179944201435287 3 -0.03356742858886719 1 2 Carbamidomethyl (C) _WEC(Carbamidomethyl (C))C(Carbamidomethyl (C))SRMW_ ENST00000374721.7_1_10:35500449-35500728:+|nuORF 0.6014990680409731 0.5410999795511968 2 Y 1 -1 4.6041 0 0 0.37942 0 0 597.2371868287095 450.12436853580317 1047.3615553645127 0 0 0 0 0 0 0 0 0 Y 0.37942 - 4 + NaN NaN 105572.8 NaN 686 1259 1946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1948 22.163 NaN 18312 35 0 3735.2 0.261 + 25560 SFRPYFTWE 9 13 616.7901418360132 1231.5657307388262 2 617.2916870117188 MULTI HCD FTMS 0 0 0 1946 7265.32421875 0.5602310596975757 6 -0.07376289367675781 2 Unmodified _SFRPYFTWE_ REV__ENSG00000249481|ENST00000674044|SPATS1;REV__nc|ENSG00000249481|Q496A3-2|SPATS1 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87271 NaN 687 1259 1946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1950 22.168 NaN 33017 35 0 4227.5 0.327 + 18890 NAESGRGQVM 10 21 524.7454328916376 1047.4763128500751 2 524.7450561523438 MULTI HCD FTMS 0 0 0 1949 21926.88671875 0.022047863344923594 -12 0.15021705627441406 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 10.150570793230772 0.4161670024087991 2 VM 2 8 20.969 0 0 2.0019 0 0 799.3597279279312 0 799.3597279279312 0 4.771212547196626 0 0 0 0 0 0 0 + VM 2.0019 + + 4 NaN NaN 89483.9 NaN 688 1260 1949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1951 22.173 NaN 51491 35 0 8034.9 0.262 + 4213 EVAPPEYHRK 10 26 409.2156444695711 1224.6251040089132 3 409.21563720703125 MULTI HCD FTMS 0 0 0 1949 8659.6572265625 0.02895528244795507 42 -0.4692955017089844 2 Unmodified _EVAPPEYHRK_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 0.6268255596534771 0.47198581731947004 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92246 NaN 689 1260 1949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1952 22.176 NaN 41645 35 0 8788.8 0.261 -1 TRLCMMSS 8 26 480.701101771236 959.387650609272 2 480.7000427246094 MULTI HCD FTMS 0 0 0 1949 8967.7451171875 0.7752067287785116 -2 0.026712417602539062 3 2 Oxidation (M) _TRLCM(Oxidation (M))M(Oxidation (M))SS_ ENSG00000037749|ENST00000522782|MFAP3;ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000037749|P55082-2|MFAP3;nc|ENSG00000198948|O75121-2|MFAP3L 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107422 NaN 690 1260 1949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1954 22.182 NaN 277680 35 0 77831 0.327 + 18763 NAAHQEALM 9 35 500.7294615782505 999.444370223301 2 500.72943115234375 MULTI HCD FTMS 0 0 0 1953 201365.59375 0.914972649289752 -2 0.02342987060546875 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 67.83816525789305 0.009787749748478139 2 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 75.697 0 0 7.5739 7.5739 91.307 0 0 0 3.819459175083608 3.819459175083608 3.819459175083608 9.208187539523749 0 3.048455006504028 0 0.3494850021680094 0.7614393726401688 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F};QQHQEA{I|L}{M(Oxidation (M))|F};QQH[AG]EA{I|L}{M(Oxidation (M))|F} 7.5739;6.6525;6.4197;5.493 +;-;-;- + 131 NaN NaN 122867.9 NaN 691 1261 1953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1955 22.186 NaN 7968.7 35 0 4633.8 0.261 -1 RCLEILEQMN 10 5 632.8049206509739 1263.5952883687478 2 632.8045654296875 MULTI HCD FTMS 0 0 0 1953 5127.2958984375 0.42279079801380526 -10 0.12872314453125 2 Oxidation (M) _RCLEILEQM(Oxidation (M))N_ ENSG00000126581|ENST00000590099|BECN1;ENST00000589493.1_1_17:40967924-40970674:-|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82712 NaN 692 1261 1953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1957 22.192 NaN 154560 35 0 11315 0.326 + 18491 MRGHIQLR 8 38 505.7882374189516 NaN 0 505.7722473144531 PEAK HCD FTMS 0 0 0 1956 1652.191162109375 0.87450010105234 -2 0.023426055908203125 1 Unmodified _MRGHIQLR_ ENST00000515007.6_1_5:77784418-77784583:-|nuORF 7.910154910731844 0.38822285293237185 2 H{I|L}{I|L}Q 4 5 11.146 0 0 1.1041 0 0 344.1642301095845 171.08831201724846 515.252542126833 0 0 0 0 0 0 0 0 0 H{I|L}{I|L}Q 1.1041 - 41 + NaN NaN 105996.8 NaN 693 1262 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1958 22.196 NaN 44116 35 0 4612.7 0.261 + 8593 HAVRDTEL 8 27 470.74573997537846 939.4769270175569 2 470.74578857421875 MULTI HCD FTMS 0 0 0 1956 23109.08203125 0.8291424272695451 3 -0.040195465087890625 2 Unmodified _HAVRDTEL_ ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6 6.723162845929126 0.5320176132289695 2 HAV 3 5 31.198 0 0 3.3208 0 0 0 629.2839449518186 629.2839449518186 31.197887582883936 0 0 0 0 0.5 0 0 0 + HAV 3.3208 + + 4 + NaN NaN 93041.8 NaN 694 1262 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1959 22.2 NaN 12704 35 0 5165.6 0.261 -1 EEFAYCWEN 9 9 624.2362583036263 NaN 0 624.2371826171875 PEAK HCD FTMS 0 0 0 1956 8245.388671875 0.6802928635656067 -86 0.8444252014160156 3 Carbamidomethyl (C) _EEFAYC(Carbamidomethyl (C))WEN_ ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95830.9 NaN 695 1262 1956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1961 22.205 NaN 23252 35 0 6133.6 0.327 -1 NHRMYQNY 8 15 571.2467820388636 NaN 0 571.24609375 PEAK HCD FTMS 0 0 0 1960 4417.6298828125 0.5589743047949748 1 -0.016763687133789062 1 Oxidation (M) _NHRM(Oxidation (M))YQNY_ ENSG00000185899|ENST00000332690|TAS2R60 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98479.2 NaN 696 1263 1960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1962 22.21 NaN 39747 35 0 3930.4 0.261 + 7552 FYAPNYLCL 9 24 552.264906075682 1102.515259218164 2 552.2650756835938 MULTI HCD FTMS 0 0 0 1960 6617.05859375 0.43497439436371077 4 -0.07033538818359375 2 Unmodified _FYAPNYLCL_ ENSG00000283758|ENST00000640449|PMIS2 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104864.5 NaN 697 1263 1960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1963 22.213 NaN 22593 35 0 5235.3 0.261 + 33042 YCWMPQMR 8 13 557.7357983169265 1113.457043700653 2 557.7357788085938 MULTI HCD FTMS 0 0 0 1960 7826.91455078125 0.4238466531454751 5 -0.08046722412109375 3 Unmodified _YCWMPQMR_ REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89298.4 NaN 698 1263 1960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1964 22.217 NaN 36476 35 0 6339.8 0.261 + 26241 SQASYRRR 8 28 512.2769305957767 NaN 0 512.276611328125 PEAK HCD FTMS 0 0 0 1960 4151.36279296875 0.6239173258032651 1 -0.016763687133789062 4 Unmodified _SQASYRRR_ REV__chr6:29724448-30491137|124|31.4|0.58|5.75|+|0|HLA-F,HLA-E|1 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95385 NaN 699 1263 1960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1966 22.222 NaN 21327 35 0 5114 0.327 + 28043 TGERGLAGLPG 11 11 514.2797355342561 NaN 0 514.2794189453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TGERGLAGLPG_ ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;nc|ENSG00000084636|Q07092-2|COL16A1 1.4819007175156935 0.3379164178981577 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96573 NaN 700 1264 1965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1967 22.227 NaN 33230 35 0 11742 0.261 + 25329 SDEYRQRR 8 25 555.2737426757812 NaN 0 555.2737426757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SDEYRQRR_ ENSG00000153879|ENST00000284000|CEBPG 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92714.9 NaN 701 1264 1965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1969 22.232 NaN 568360 35 0 80613 0.327 + 25251 SASSVTVTR 9 63 454.24570597836276 906.4768590235255 2 454.2455749511719 MULTI HCD FTMS 0 0 0 1968 388879.25 1 0 0 1 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 125.0377797344192 0.0009059125702818869 2 {[SA]|[TG]}SSVTVTR 9 0 + 100.7 0 0 11.109 11.109 99.871 0 0 0 2.839322000954283 2.839322000954283 2.839322000954283 100.69775651841368 0 2.7614393726401687 1.6989700043360187 0.75 0 + + {[SA]|[TG]}SSVTVTR 11.109 + + 217 + NaN NaN 173467.5 NaN 702 1265 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1970 22.236 NaN 31071 35 0 6141.7 0.261 + -1 MEEETCDIE 9 19 586.2105653191825 1170.4065777051649 2 586.7123413085938 MULTI HCD FTMS 0 0 0 1968 7319.93603515625 0.6265969388463102 1 -0.019922256469726562 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))EEETC(Carbamidomethyl (C))DIE_ REV__ENSG00000101311|ENST00000217289|FERMT1;REV__ENSG00000149781|ENST00000345728|FERMT3;REV__ENST00000541326.5_1_11:63979141-63987695:+|nuORF;REV__ENST00000546255.1_1_11:63979177-63987262:+|nuORF;REV__nc|ENSG00000101311|Q9BQL6-2|FERMT1;REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1;REV__nc|ENSG00000149781|Q86UX7|FERMT3 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92524.9 NaN 703 1265 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1971 22.24 NaN 44504 35 0 7104.6 0.262 + 29849 VEVPRMMK 8 22 495.2668167004455 988.519080467691 2 495.26678466796875 MULTI HCD FTMS 0 0 0 1968 9287.6748046875 0.8405734323906344 1 -0.019922256469726562 3 Unmodified _VEVPRMMK_ REV__ENSG00000159625|ENST00000360716|DRC7;REV__nc|ENSG00000159625|Q8IY82-2|DRC7 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87327 NaN 704 1265 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1972 22.243 NaN 19490 35 0 4884.9 0.261 + 18550 MVDWADWY 8 14 543.2239379882812 NaN 0 543.2239379882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MVDWADWY_ REV__ENSG00000140400|ENST00000267978|MAN2C1;REV__ENST00000563368.5_1_15:75650962-75652298:-|nuORF;REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF;REV__nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;REV__nc|ENSG00000140400|Q9NTJ4-4|MAN2C1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89462.3 NaN 705 1265 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1973 22.247 NaN 32171 35 0 6902.8 0.261 + 35143 YVGRGLNSDQ 10 21 554.7728587984478 NaN 0 554.7734375 PEAK HCD FTMS 0 0 0 1968 1950.807373046875 0.4547007900138336 -1 0.010156631469726562 5 Unmodified _YVGRGLNSDQ_ ENSG00000138378|ENST00000392320|STAT4;ENSG00000170581|ENST00000314128|STAT2;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85061.7 NaN 706 1265 1968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1975 22.252 NaN 145830 35 0 41169 0.327 + -1 EADMDATLME 10 33 579.2208490857186 1156.427145238237 2 579.22119140625 MULTI HCD FTMS 0 0 0 1974 60013.3984375 0.572359181899844 3 -0.04364776611328125 1 2 Oxidation (M) _EADM(Oxidation (M))DATLM(Oxidation (M))E_ REV__CON__Q32PI4 6.2057823575117 0.44245551207394906 2 {[CP]|[EA]}D[PG]QYR 8 -1 20.935 0 0 1.8103 0 0 0 237.0004824274047 237.0004824274047 13.945247061488857 0 0 0 0 0.3054621874040891 0 0 0 {[CP]|[EA]}D[PG]QYR 1.8103 - 54 + NaN NaN 107957.5 NaN 707 1266 1974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1976 22.257 NaN 72822 35 0 11397 0.263 -1 EAAGEVRAM 9 38 475.2239495703555 948.433346207511 2 475.2237243652344 MULTI HCD FTMS 0 0 0 1974 36852.64453125 0.1401605627746377 72 -0.7678070068359375 2 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 12.240655878213236 0.2545997876781172 2 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 + 32.853 0 0 3.464 3.464 81.946 0 0 0 19.665762445130504 5.6424927368726046 5.6424927368726046 3.4678748622465676 0 0 0 0 0 {[CP]|[EA]}AGEVR{[MS]|[{M(Oxidation (M))|F}A]};{[CP]|[EA]}QEVR{[MS]|[{M(Oxidation (M))|F}A]} 3.464;3.0983 +;- + 70 + NaN NaN 93013.6 NaN 708 1266 1974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1977 22.26 NaN 52748 35 0 7132.2 0.261 + 11769 KEAETRAEF 9 20 540.7694951424427 1079.5244373516853 2 540.7694702148438 MULTI HCD FTMS 0 0 0 1974 25273.09375 0.5109471319681461 -3 0.04684257507324219 3 Unmodified _KEAETRAEF_ CON__Q3SX28;ENSG00000140416|ENST00000403994|TPM1;ENSG00000143549|ENST00000651641|TPM3;ENSG00000167460|ENST00000643579|TPM4;ENSG00000198467|ENST00000645482|TPM2;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000198467|P07951-3|TPM2 8.155526934196011 0.2891920862272901 2 KE 2 7 24.776 0 0 2.2951 0 0 0 819.3636009610947 819.3636009610947 24.776296993281406 0 0 0 0 0 0 0.3807196863200844 0 + KE 2.2951 + + 1 + NaN NaN 87566.8 NaN 709 1266 1974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1978 22.263 NaN 28508 35 0 8221.7 0.261 -1 WECCSRMW 8 17 607.7314540597641 1213.4483551863282 2 607.7313842773438 MULTI HCD FTMS 0 0 0 1974 11264.8046875 0.2295781751106876 10 -0.11801719665527344 4 2 Carbamidomethyl (C) _WEC(Carbamidomethyl (C))C(Carbamidomethyl (C))SRMW_ ENST00000374721.7_1_10:35500449-35500728:+|nuORF 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89313 NaN 710 1266 1974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1979 22.267 NaN 38730 35 0 6211.6 0.261 + 14071 KYVSQNCVTS 10 23 564.7726201150389 NaN 0 564.7606201171875 PEAK HCD FTMS 0 0 0 1974 2051.772216796875 0.4518580947572678 1 -0.023492813110351562 5 Unmodified _KYVSQNCVTS_ ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-3|EHMT1 2.9952420565917617 0.3376207769591857 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93931.2 NaN 711 1266 1974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1980 22.27 NaN 39521 35 0 9081.1 0.261 + 18391 MPQKERESI 9 21 559.2869801853834 1116.5594074375667 2 559.2860717773438 MULTI HCD FTMS 0 0 0 1974 7512.95166015625 0.19426151176710382 -13 0.18090248107910156 6 Unmodified _MPQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 4.897010918128616 0.31389406404703984 2 M[QP]KE 5 4 20.713 0 0 1.8551 0 0 0 500.2485445611938 500.2485445611938 20.713337517843655 0 0 0 0 0 0 0 0 + M[QP]KE 1.8551 + + 5 + NaN NaN 105551.7 NaN 712 1266 1974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1982 22.276 NaN 88046 35 0 19111 0.327 + 3119 EAMNMYNNNN 10 34 405.49030089248214 1213.4490732776464 3 405.4903259277344 MULTI HCD FTMS 0 0 0 1981 24437.4375 0.1922535393057466 12 -0.12879371643066406 1 Unmodified _EAMNMYNNNN_ REV__ENSG00000103460|ENST00000219746|TOX3;REV__nc|ENSG00000103460|O15405-2|TOX3;REV__TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant 0.4007161486938917 0.47318265037741464 2 {[CP]|[EA]}D 3 -1 10.458 0 0 0.86181 0 0 0 895.3182506778171 895.3182506778171 3.4678748622465623 0 0 0 0 0 0 0 0 {[CP]|[EA]}D 0.86181 - 4 + NaN NaN 94215.5 NaN 713 1267 1981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1983 22.28 NaN 41018 35 0 8258 0.261 -1 GYMCTMCR 8 25 527.1850694869476 1052.355586040695 2 527.1849365234375 MULTI HCD FTMS 0 0 0 1981 4498.12060546875 0.47740460123014145 1 -0.0101318359375 2 Carbamidomethyl (C),2 Oxidation (M) _GYM(Oxidation (M))C(Carbamidomethyl (C))TM(Oxidation (M))CR_ chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|2;L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|113|1|anti-sense 0.6903765706972694 0.5409681170271811 2 R 1 -1 15.485 0 0 1.4714 0 0 878.2446679272169 0 878.2446679272169 0 15.484550065040281 0 0 0 0 0 0 0 R 1.4714 + + 1 + NaN NaN 89291.5 NaN 714 1267 1981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1985 22.286 NaN 58174 35 0 4781.5 0.327 -1 CPHPLCCAS 9 30 551.2172358195729 NaN 0 551.2015380859375 PEAK HCD FTMS 0 0 0 1984 3930.74462890625 1 0 0 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PHPLC(Carbamidomethyl (C))C(Carbamidomethyl (C))AS_ ENSG00000241241|ENST00000440582|KRTAP4-16 2.302733041254933 0.2840881193086663 2 A 1 -1 6.9897 0 0 0.63518 0 0 105.03291031343049 921.3272581650938 1026.3601684785242 0 0 0 0 0 0 0 0 0 A 0.63518 + + 1 + NaN NaN 97389.4 NaN 715 1268 1984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1986 22.29 NaN 36741 35 0 9875.4 0.261 + -1 SPLCLLRRM 9 27 552.803833166874 1103.593113400548 2 552.8034057617188 MULTI HCD FTMS 0 0 0 1984 10982.556640625 0.6618461054253884 -10 0.14388084411621094 2 Oxidation (M) _SPLCLLRRM(Oxidation (M))_ REV__ENSG00000166046|ENST00000299045|TCP11L2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90929.9 NaN 716 1268 1984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1988 22.296 NaN 1331200 35 0 174390 0.327 + 18891 NAESGRGQVM 10 72 524.7454328916376 1047.4763128500751 2 524.74560546875 MULTI HCD FTMS 0 0 0 1987 836862.375 0.841479573419352 -3 0.04364776611328125 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 132.13456570155267 1.54189796951664E-05 2 {[QG]|[NA]}ESGRGQVM 10 0 + 100.88 0 0 9.631 9.631 91.227 0 0 0 6.046349804879156 6.046349804879156 6.046349804879156 4.655593552960937 0 2.853917193908117 1.5228787452803376 0.6307196863200843 1.8411290632962718 + + {[QG]|[NA]}ESGRGQVM;{[QG]|[NA]}ESGRANVM;NAESGRGQVM;{[QG]|[NA]}ESGRG[AG]VM;{[QG]|[NA]}ES[RN]QVM;NAES[RN]QVM;{[QG]|[NA]}ESGRAGGVM;NAESGRG[AG]VM;{[QG]|[NA]}ES[RN][AG]VM;{[QG]|[NA]}ESGRV{[QG]|[NA]}M 9.631;9.1865;9.0537;8.7561;8.6993;8.4137;8.3116;8.1788;7.8202;7.7283 +;-;+;-;-;-;-;-;-;- + 1102 NaN NaN 287302.1 NaN 717 1269 1987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1989 22.3 NaN 26082 35 0 4623.7 0.261 -1 NAESGRGQVM 10 18 532.7429743636768 1063.4713957941535 2 532.7435302734375 MULTI HCD FTMS 0 0 0 1987 12350.1015625 0.6538074156363036 -10 0.13733291625976562 2 Oxidation (M) _NAESGRGQVM(Oxidation (M))_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 9.5439744041441 0.42184090036563754 2 V{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.3712 0 0 799.3560047834 0 799.3560047834 0 15.612431371158735 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3712 + + 5 NaN NaN 86845.5 NaN 718 1269 1987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1990 22.303 NaN 24423 35 0 6682.4 0.261 + 34612 YPNYDKKY 8 17 545.7631870347159 1089.5118211362317 2 545.763671875 MULTI HCD FTMS 0 0 0 1987 7120.7880859375 0.460155145581428 -6 0.09049034118652344 3 Unmodified _YPNYDKKY_ REV__ENSG00000155875|ENST00000380534|SAXO1 0.6903765706972694 0.5409681170271811 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.42258 0 0 728.1960385208005 198.25628076724846 926.4523192880489 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.42258 - 2 + NaN NaN 103051.2 NaN 719 1269 1987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1991 22.307 NaN 23413 35 0 4853.1 0.261 + 119 ADYTPLVKVK 10 20 567.3332721463552 NaN 0 567.3341064453125 PEAK HCD FTMS 0 0 0 1987 1852.7557373046875 0.2616696425751405 -4 0.06357002258300781 4 Unmodified _ADYTPLVKVK_ REV__ENSG00000136068|ENST00000295956|FLNB;REV__ENST00000481470.5_1_3:58118395-58154450:+|nuORF;REV__nc|ENSG00000136068|O75369-2|FLNB;REV__nc|ENSG00000136068|O75369-3|FLNB;REV__nc|ENSG00000136068|O75369-4|FLNB;REV__nc|ENSG00000136068|O75369-5|FLNB;REV__nc|ENSG00000136068|O75369-6|FLNB;REV__nc|ENSG00000136068|O75369-7|FLNB;REV__nc|ENSG00000136068|O75369-8|FLNB;REV__nc|ENSG00000136068|O75369-9|FLNB 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92620.9 NaN 720 1269 1987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1993 22.312 NaN 184220 35 0 52031 0.327 + 18764 NAAHQEALM 9 30 500.7294615782505 999.444370223301 2 500.72955322265625 MULTI HCD FTMS 0 0 0 1992 162474.25 0.7382566812701362 7 -0.06554794311523438 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 40.23920728925047 0.06424668180817725 2 {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F} 9 0 + 64.078 0 0 6.4114 6.4114 89.203 0 0 0 58.59366274865181 16.478174818886373 16.478174818886373 9.208187539523749 0 1.8494850021680094 0 0 0 + + {[QG]|[NA]}AHQEA{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AH[AG]EA{I|L}{M(Oxidation (M))|F} 6.4114;5.4901 +;- + 92 + NaN NaN 114229.4 NaN 721 1270 1992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1994 22.317 NaN 17918 35 0 3108.2 0.261 + -1 HRMCLTQRY 9 19 632.8049206509739 1263.5952883687478 2 633.3062744140625 MULTI HCD FTMS 0 0 0 1992 8221.044921875 1 0 0 2 Carbamidomethyl (C) _HRMC(Carbamidomethyl (C))LTQRY_ REV__ENST00000521062.5_1_6:112101798-112141100:-|nuORF 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88334.8 NaN 722 1270 1992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1995 22.32 NaN 39193 35 0 11540 0.262 -1 VVVMAPKEAV 10 25 529.798994031166 NaN 0 529.7991943359375 PEAK HCD FTMS 0 0 0 1992 4085.556640625 0.6679695735764667 1 -0.013456344604492188 3 Oxidation (M) _VVVM(Oxidation (M))APKEAV_ ENST00000593017.1_1_19:12917487-12917751:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89625.2 NaN 723 1270 1992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1997 22.326 NaN 69044 35 0 7854.3 0.411 + 27570 TADPSHQTM 9 47 494.2136758664891 986.4127987997782 2 494.21337890625 MULTI HCD FTMS 0 0 0 1996 30930.583984375 0.32238300417400195 -8 0.12049102783203125 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 31.26834338654808 0.10542797264966089 2 [TA]D 3 6 39.494 0 0 4.0038 0 0 0 696.2787387925617 696.2787387925617 17.811121573686748 0 0 0 0 1 1.5228787452803376 0.3807196863200844 0 + [TA]D 4.0038 + + 25 + NaN NaN 105998.4 NaN 724 1271 1996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 1999 22.334 NaN 19388 35 0 5188.9 0.411 + 23279 RHGPAAPRY 9 25 512.7746978989992 1023.5348428647984 2 512.7750244140625 MULTI HCD FTMS 0 0 0 1998 6410.6357421875 0.4097932640245218 -7 0.10179519653320312 1 Unmodified _RHGPAAPRY_ REV__ENST00000313269.5_1_8:145064266-145064371:+|nuORF 3.944395688203298 0.32111559684428237 2 RY 2 -1 17.959 0 0 1.7546 0 0 686.3698597638687 0 686.3698597638687 0 17.95880017344075 0 0 0 0 0 0 0 RY 1.7546 + + 1 NaN NaN 85745.9 NaN 725 1272 1998 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2003 22.357 NaN 147840 35 0 20093 0.327 + 25252 SASSVTVTR 9 44 454.24570597836276 906.4768590235255 2 454.2457580566406 MULTI HCD FTMS 0 0 0 2002 56272.4765625 0.144704240615821 10 -0.1122589111328125 1 Unmodified _SASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 45.739877483867886 0.03899552410870734 2 {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 66.889 0 0 7.379 7.379 95.957 0 0 0 59.89963434401865 7.147642715192504 7.147642715192504 66.88933438737884 0 1.1549471895720984 1.5228787452803376 0.4247425010840047 0 + + {[SA]|[TG]}SSVTV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.379 + + 49 + NaN NaN 113279.5 NaN 726 1275 2002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2004 22.361 NaN 17237 35 0 6554.4 0.261 + -1 YSMMKGEMM 9 16 586.2105653191825 1170.4065777051649 2 586.211181640625 MULTI HCD FTMS 0 0 0 2002 3756.159912109375 0.1488882564203407 11 -0.12047195434570312 2 4 Oxidation (M) _YSM(Oxidation (M))M(Oxidation (M))KGEM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000117560|ENST00000367721|FASLG 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98388.9 NaN 727 1275 2002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2005 22.365 NaN 13020 35 0 2728 0.261 -1 CDMMADPWNA 10 13 621.7166592631636 NaN 0 621.7169189453125 PEAK HCD FTMS 0 0 0 2002 1870.583740234375 0.313832266624374 1 -0.0131988525390625 3 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))DM(Oxidation (M))M(Oxidation (M))ADPWNA_ ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;nc|ENSG00000155066|Q8N271-3|PROM2 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89352.5 NaN 728 1275 2002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2008 22.378 NaN 30313 35 0 8453 0.327 + 4171 ETRAEFAER 9 17 554.7724445039916 1107.530336074783 2 554.7725219726562 MULTI HCD FTMS 0 0 0 2007 14208.177734375 0.5110815084638498 -3 0.028301239013671875 1 Unmodified _ETRAEFAER_ CON__Q3SX28;ENSG00000140416|ENST00000403994|TPM1;ENSG00000143549|ENST00000651641|TPM3;ENSG00000167460|ENST00000643579|TPM4;ENSG00000198467|ENST00000645482|TPM2;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000198467|P07951-3|TPM2 2.9952420565917617 0.3283108881486655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84102.6 NaN 729 1277 2007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2009 22.382 NaN 73330 35 0 16223 0.264 + 7936 GDQSQAWYMD 10 35 400.8263794731774 NaN 0 400.82672119140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _GDQSQAWYMD_ REV__ENSG00000139174|ENST00000345127|PRICKLE1 0.45834013312273997 0.33979201340002624 2 C(Carbamidomethyl (C)) 1 -1 0.3786 0 0 0.047347 0 0 385.4278616301454 251.16620813541252 636.594069765558 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.047347 - 1 + NaN NaN 91224.3 NaN 730 1277 2007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2011 22.388 NaN 53744 35 0 8388.8 0.327 -1 EAAGEVRAM 9 27 475.2239495703555 948.433346207511 2 475.2236022949219 MULTI HCD FTMS 0 0 0 2010 36208.48046875 0.13771063282611973 84 -0.8643169403076172 1 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 9.38312468134398 0.279288223203164 2 {[CP]|[EA]}AWVR{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 {[CP]|[EA]} + + 28.416 2.2185 1.1088 2.9961 2.9961 60.086 0 0 0 0 12.931825014007217 0 0 0 0 0 0 0 {[CP]|[EA]}AWVR{[MS]|[{M(Oxidation (M))|F}A]} 2.9961 - 54 + NaN NaN 85480.5 NaN 731 1278 2010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2012 22.392 NaN 46788 35 0 5272 0.261 + 11782 KEEAPSYRT 9 27 540.7694951424427 1079.5244373516853 2 540.7694091796875 MULTI HCD FTMS 0 0 0 2010 23945.5078125 0.48410727476994037 9 -0.10091400146484375 2 Unmodified _KEEAPSYRT_ ENSG00000025293|ENST00000374012|PHF20;SULF2-PHF20|1|fusion 2.9952420565917617 0.3283108881486655 2 KE 2 7 20.969 0 0 1.9424 0 0 0 819.3587282875401 819.3587282875401 20.969100130080562 0 0 0 0 0 0 0 0 + KE 1.9424 + + 1 + NaN NaN 87874.4 NaN 732 1278 2010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2013 22.396 NaN 44215 35 0 8099.4 0.261 -1 ESALIEIMLC 10 15 597.7913973381993 1193.5682417431985 2 597.7916259765625 MULTI HCD FTMS 0 0 0 2010 16182.9541015625 0.7202754245281296 -5 0.045803070068359375 3 Carbamidomethyl (C),Oxidation (M) _ESALIEIM(Oxidation (M))LC(Carbamidomethyl (C))_ ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant 1.4819007175156935 0.4674597685733628 2 {[ES]|[DT]|[{I|L}C]}A 3 -1 10.458 0 0 0.87616 0 0 0 903.4324950517787 903.4324950517787 10.45757490560675 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}A 0.87616 + + 1 + NaN NaN 87944 NaN 733 1278 2010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2014 22.399 NaN 31407 35 0 9443.8 0.261 -1 PPYCYSNW 8 18 543.719441094059 NaN 0 543.7191772460938 PEAK HCD FTMS 0 0 0 2010 5900.0478515625 0.5996115101530488 4 -0.04471015930175781 4 Carbamidomethyl (C) _PPYC(Carbamidomethyl (C))YSNW_ ENST00000464265.5_1_21:38439605-38441890:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83444.6 NaN 734 1278 2010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2016 22.404 NaN 57007 35 0 5613.9 0.411 + 18392 MPQKERESI 9 47 559.2869801853834 1116.5594074375667 2 559.2871704101562 MULTI HCD FTMS 0 0 0 2015 38674.421875 1 0 0 1 Unmodified _MPQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 23.789781309258295 0.1548179064208189 2 MPQKE 5 4 62.493 0 0 5.5969 0 0 0 500.2483004205688 500.2483004205688 57.88872836444014 0 0 0 0 0.7059771852360797 1.6989700043360187 0 0.5 + MPQKE 5.5969 + + 31 + NaN NaN 106371.2 NaN 735 1279 2015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2018 22.412 NaN 43404 35 0 4956.1 0.327 -1 CLCAFDRC 8 23 551.2170475960406 NaN 0 551.20166015625 PEAK HCD FTMS 0 0 0 2017 2509.178466796875 1 0 0 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LC(Carbamidomethyl (C))AFDRC(Carbamidomethyl (C))_ ENSG00000125910|ENST00000246115|S1PR4 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100386.8 NaN 736 1280 2017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2019 22.417 NaN 30244 35 0 11240 0.261 -1 MSENMQCLV 9 17 564.2300912298044 NaN 0 564.2305908203125 PEAK HCD FTMS 0 0 0 2017 4400.32666015625 0.37371562415273096 -14 0.1605091094970703 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))SENMQC(Carbamidomethyl (C))LV_ chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99287.4 NaN 737 1280 2017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2021 22.422 NaN 708360 35 0 92626 0.327 + 18892 NAESGRGQVM 10 72 524.7454328916376 1047.4763128500751 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2020 458833.15625 0.4613646641622583 9 -0.09174537658691406 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 132.13456570155267 1.54189796951664E-05 2 {[QG]|[NA]}ESGRGQVM 10 0 + 99.548 0 0 9.5036 9.5036 91.238 0 0 0 4.942190502882156 4.942190502882156 4.942190502882156 4.942190502882156 0 2.8494850021680094 1.5228787452803376 0.6382104921644451 1.579689690656103 + + {[QG]|[NA]}ESGRGQVM;NAESGRGQVM;{[QG]|[NA]}ESGRG[AG]VM;{[QG]|[NA]}ES[RN]QVM;{[QG]|[NA]}ESGRV{[QG]|[NA]}M;{[QG]|[NA]}ES[RN][AG]VM;NAES[RV]{[QN]|[E{I|L}]|[KN]}M;{[QG]|[NA]}EV[NS]{[{M(Oxidation (M))|F}H]|[RQ]}M;{[QG]|[NA]}EV[NS]V[C(Carbamidomethyl (C))R];{[QG]|[NA]}ESGR[KC][PS] 9.5036;9.0318;8.6287;8.553;7.8505;7.6739;5.9063;5.5142;4.8213;4.8019 +;+;-;-;-;-;-;-;-;- + 484 NaN NaN 189237.2 NaN 738 1281 2020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2022 22.427 NaN 30133 35 0 11826 0.261 + -1 ANEATKRCD 9 18 532.7429743636768 1063.4713957941535 2 532.7427978515625 MULTI HCD FTMS 0 0 0 2020 16191.3623046875 0.8571615942173592 2 -0.02321624755859375 2 Carbamidomethyl (C) _ANEATKRC(Carbamidomethyl (C))D_ REV__ENSG00000171444|ENST00000408903|MCC;REV__nc|ENSG00000171444|P23508|MCC 3.2813086475875832 0.32614229037259 2 {[QG]|[NA]}E 3 -1 10.458 0 0 0.98334 0 0 0 746.3269747369749 746.3269747369749 8.406206186877938 0 0 0 0 0 0 0 0 {[QG]|[NA]}E 0.98334 + + 2 + NaN NaN 93673.9 NaN 739 1281 2020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2024 22.432 NaN 115160 35 0 31637 0.327 -1 NAAHQEALM 9 23 500.7294615782505 999.444370223301 2 500.7296142578125 MULTI HCD FTMS 0 0 0 2023 89165.375 0.4051530247513509 19 -0.1954212188720703 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 22.736283301280096 0.1639198954644489 2 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.2774523539636 0 650.2774523539636 0 41.197887582883936 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 38 + NaN NaN 99956.8 NaN 740 1282 2023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2025 22.437 NaN 23635 35 0 5381.2 0.261 -1 RYKMMCVK 8 18 545.7634335073667 1089.5123140815333 2 545.76318359375 MULTI HCD FTMS 0 0 0 2023 12083.591796875 0.5760477039232759 -13 0.13677597045898438 2 2 Oxidation (M) _RYKM(Oxidation (M))M(Oxidation (M))CVK_ ENST00000377445.5_9:69238165-69262487:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105401.7 NaN 741 1282 2023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2026 22.44 NaN 30866 35 0 8572.1 0.261 + 7882 FYTMYNRK 8 11 561.7742135693717 NaN 0 561.7741088867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FYTMYNRK_ ENSG00000178127|ENST00000318388|NDUFV2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95212.6 NaN 742 1282 2023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2028 22.446 NaN 44317 35 0 9891 0.327 -1 LYVRLRGRFF 10 31 456.9337476883442 NaN 0 456.93389892578125 PEAK HCD FTMS 0 0 0 2027 9153.9912109375 0.6037885226751932 55 -0.5741252899169922 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LYVRLRGRFF_ ENST00000299084.8_1_15:38643663-38643696:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87475.7 NaN 743 1283 2027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2029 22.45 NaN 9305.1 35 0 4692.4 0.261 -1 ATEALKKMYM 10 6 601.3016750980944 1200.5887972629887 2 601.3016967773438 MULTI HCD FTMS 0 0 0 2027 8982.6748046875 0.4192898820606054 -13 0.13348960876464844 2 Oxidation (M) _ATEALKKM(Oxidation (M))YM_ ENSG00000006007|ENST00000353258|GDE1 1.4819007175156935 0.4674597685733628 2 WW{I|L} 3 -1 10.458 0 0 0.87104 0 0 0 712.3186129205686 712.3186129205686 10.45757490560675 0 0 0 0 0 0 0 0 WW{I|L} 0.87104 - 1 + NaN NaN 79263.3 NaN 744 1283 2027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2031 22.456 NaN 127350 35 0 21915 0.327 + 27571 TADPSHQTM 9 29 494.2136758664891 986.4127987997782 2 494.2135009765625 MULTI HCD FTMS 0 0 0 2030 93984.734375 0.9795832186554926 5 -0.05033302307128906 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 27.628801355627647 0.12213550946336599 2 [TA]D 3 6 41.254 0 0 4.1823 0 0 0 696.2772633356758 696.2772633356758 35.7699217471275 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 + [TA]D 4.1823 + + 10 + NaN NaN 103618.7 NaN 745 1284 2030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2032 22.46 NaN 16259 35 0 4332.4 0.261 + 32988 YASALRATTA 10 10 512.7746978989992 1023.5348428647984 2 512.7747802734375 MULTI HCD FTMS 0 0 0 2030 13928.53515625 0.8903672138470797 5 -0.05033302307128906 2 Unmodified _YASALRATTA_ tr|U7SQ43|U7SQ43_FUSNUGlutaminesynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01684PE=3SV=1 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82652.9 NaN 746 1284 2030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2033 22.464 NaN 12728 35 0 4242.8 0.261 -1 CWSQCTWNY 9 11 624.2362583036263 NaN 0 624.2364501953125 PEAK HCD FTMS 0 0 0 2030 5848.46435546875 0.48253256725355403 -64 0.6886959075927734 3 Carbamidomethyl (C) _CWSQC(Carbamidomethyl (C))TWNY_ ENST00000454171.1_1_7:84657519-84657798:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89260.2 NaN 747 1284 2030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2035 22.469 NaN 7219.8 35 0 1432.2 0.411 + 21186 PPWHPYPHPH 10 10 632.8049206509739 1263.5952883687478 2 632.8049926757812 MULTI HCD FTMS 0 0 0 2034 3746.088623046875 0.3088980682490118 14 -0.14070892333984375 1 Unmodified _PPWHPYPHPH_ ENST00000467160.1_1_19:19757877-19758222:-|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105456.2 NaN 748 1285 2034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2037 22.481 NaN 32640 35 0 5607.6 0.411 -1 WKMEFDTR 8 26 564.7607953461294 1127.5070377590587 2 564.759033203125 MULTI HCD FTMS 0 0 0 2036 5394.61181640625 0.15624434315678098 66 -0.6659698486328125 1 Oxidation (M) _WKM(Oxidation (M))EFDTR_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 4.3292370932331545 0.5355693454741696 2 N 1 -1 2.7642 0 0 0.24516 0 0 563.6448073897212 446.7912996881469 1010.4361070778682 0 0 0 0 0 0 0 0 0 N 0.24516 - 1 + NaN NaN 94377.7 NaN 749 1286 2036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2040 22.496 NaN 40767 35 0 7619.9 0.327 + 4172 ETRAEFAER 9 22 554.7724445039916 1107.530336074783 2 554.7730102539062 MULTI HCD FTMS 0 0 0 2039 16681.650390625 0.6000546449162383 8 -0.07880020141601562 1 Unmodified _ETRAEFAER_ CON__Q3SX28;ENSG00000140416|ENST00000403994|TPM1;ENSG00000143549|ENST00000651641|TPM3;ENSG00000167460|ENST00000643579|TPM4;ENSG00000198467|ENST00000645482|TPM2;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000198467|P07951-3|TPM2 7.608950283845883 0.29333554423920943 2 R 1 8 19.732 0 0 1.7816 0 0 933.4191280443127 0 933.4191280443127 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 + R 1.7816 + + 1 + NaN NaN 88480.7 NaN 750 1288 2039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2041 22.501 NaN 14952 35 0 4056.3 0.261 + -1 HHCSCAPHC 9 13 583.2066040039062 NaN 0 583.2066040039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 3 Carbamidomethyl (C) _HHC(Carbamidomethyl (C))SC(Carbamidomethyl (C))APHC(Carbamidomethyl (C))_ REV__nc|ENSG00000179593|O15296-3|ALOX15B 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88399.8 NaN 751 1288 2039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2043 22.506 NaN 59911 35 0 6828 0.411 + 23909 RTCPVRMS 8 50 475.2388609953051 NaN 0 475.2235412597656 PEAK HCD FTMS 0 0 0 2042 1626.424072265625 0.9980646469059296 -1 0.009912490844726562 1 Unmodified _RTCPVRMS_ ZNF319|p.P63Hfs*96|1|0.34|ENSG00000166188|chr16:57998078-57998078|G/-|frameshift_variant 7.289230182591677 0.38822285293237185 2 AGEVRA 6 6 31.771 0 0 3.3497 0 0 200.1106432779165 162.0224550836547 362.13309836157123 0 0 0 0 0 0 0 0 0 AGEVRA 3.3497 - 51 + NaN NaN 111924.3 NaN 752 1289 2042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2045 22.514 NaN 37742 35 0 5390.8 0.327 + 34060 YNICRWFK 8 23 565.283679660811 1128.552806388422 2 565.283935546875 MULTI HCD FTMS 0 0 0 2044 1731.6669921875 0.1997841975945141 1 -0.009952545166015625 1 Unmodified _YNICRWFK_ REV__ENSG00000185313|ENST00000449082|SCN10A 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93782.2 NaN 753 1290 2044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2046 22.519 NaN 17981 35 0 3237.3 0.261 + 2042 DEEFRHLYA 9 15 590.2748380774946 NaN 0 590.2747802734375 PEAK HCD FTMS 0 0 0 2044 3832.170166015625 0.5492559698978329 -6 0.05838966369628906 2 Unmodified _DEEFRHLYA_ ENSG00000147689|ENST00000690554|FAM83A;nc|ENSG00000147689|Q86UY5-2|FAM83A;nc|ENSG00000147689|Q86UY5-3|FAM83A 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108413.9 NaN 754 1290 2044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2048 22.524 NaN 31854 35 0 5004.1 0.411 + 18393 MPQKERESI 9 39 559.2869801853834 1116.5594074375667 2 559.2869262695312 MULTI HCD FTMS 0 0 0 2047 9619.203125 0.2487226093796651 12 -0.12112045288085938 1 Unmodified _MPQKERESI_ ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF 1.4819007175156935 0.3397831423917744 2 G 1 9 5.4846 0 0 0.4912 0 0 557.7937346854168 498.7137850397094 1056.5075197251263 0 0 0 0 0 0 0 0 0 G 0.4912 - 2 + NaN NaN 92445.4 NaN 755 1291 2047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2050 22.532 NaN 65839 35 0 12585 0.411 -1 0 38 400.3501892089844 NaN 0 400.3501892089844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 1.5938 0 0 0.20031 0 0 396.78963796099384 235.81507288150627 632.6047108425001 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.20031 - 2 + NaN NaN 107285.2 NaN 756 1292 2049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2052 22.54 NaN 264900 35 0 29263 0.327 + 18893 NAESGRGQVM 10 58 524.7454328916376 1047.4763128500751 2 524.7454833984375 MULTI HCD FTMS 0 0 0 2051 141250.96875 0.14203028894544364 21 -0.19866943359375 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 55.23464941255904 0.058752269732683056 2 {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM 10 0 + 67.739 0 0 6.4669 6.4669 93.431 0 0 0 25.056584229283843 52.067446111442344 25.056584229283843 37.34250962403124 0 1.9247425010840047 1.3979400086720375 0 1.086696871556164 + + {[QG]|[NA]}ES{[NV]|[RG]}{[QG]|[NA]}VM;{[QG]|[NA]}ES{[NV]|[RG]}[KC][PS];[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VM;[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]HTN 6.4669;2.9019;2.0959;0.93946 +;-;-;- + 407 NaN NaN 133401.7 NaN 757 1293 2051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2053 22.545 NaN 28797 35 0 5601 0.261 -1 KDFMAEHSM 9 22 564.2300912298044 NaN 0 564.2303466796875 PEAK HCD FTMS 0 0 0 2051 2076.66748046875 0.17636942517206222 -1 0.00803375244140625 2 2 Oxidation (M) _KDFM(Oxidation (M))AEHSM(Oxidation (M))_ ENST00000320027.9_1_13:31729697-31735637:-|nuORF;ENST00000445273.6_1_13:31729697-31736149:-|nuORF 3.5964929083625545 0.27781873954207675 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93243.5 NaN 758 1293 2051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2054 22.548 NaN 19638 35 0 5317.9 0.261 + -1 VCYCLQQD 8 14 543.2240600585938 NaN 0 543.2240600585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))YC(Carbamidomethyl (C))LQQD_ REV__ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87612.6 NaN 759 1293 2051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2055 22.551 NaN 30893 35 0 11939 0.261 + 31066 VTAGLLLLLL 10 20 513.353271484375 NaN 0 513.353271484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VTAGLLLLLL_ REV__ENST00000592694.5_1_19:38795766-38795970:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80769.3 NaN 760 1293 2051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2057 22.557 NaN 78110 35 0 20462 0.327 -1 NAAHQEALM 9 23 500.7294615782505 999.444370223301 2 500.72943115234375 MULTI HCD FTMS 0 0 0 2056 62955.859375 0.2860612300638218 31 -0.3122711181640625 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 20.41453444215458 0.18397929046831515 2 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.279527549276 0 650.279527549276 0 32.245462655597095 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 31 + NaN NaN 97430.9 NaN 761 1294 2056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2058 22.561 NaN 31720 35 0 7544.8 0.261 + -1 YLVCISYM 8 18 532.743427074905 NaN 0 532.7429809570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _YLVC(Carbamidomethyl (C))ISYM(Oxidation (M))_ REV__ENST00000507760.5_1_4:25363540-25366888:+|nuORF 0.7936320650641473 0.38822285293237185 2 E 1 -1 4.6041 0 0 0.43293 0 0 769.3771606910224 162.02271448306877 931.3998751740911 0 0 0 0 0 0 0 0 0 E 0.43293 - 1 + NaN NaN 102118.3 NaN 762 1294 2056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2060 22.567 NaN 34343 35 0 5240.3 0.411 + -1 CWGEHTYF 8 30 550.2172554308281 NaN 0 550.2169799804688 PEAK HCD FTMS 0 0 0 2059 7005.0947265625 0.4290183080551328 -3 0.034725189208984375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95959.7 NaN 763 1295 2059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2062 22.575 NaN 59228 35 0 7414.9 0.327 + 27572 TADPSHQTM 9 23 494.2136758664891 986.4127987997782 2 494.21368408203125 MULTI HCD FTMS 0 0 0 2061 30317.501953125 0.31599297845902297 17 -0.1565399169921875 1 Unmodified _TADPSHQTM_ ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L 8.155526934196011 0.2891920862272901 2 D[PG] 3 7 20.458 0 0 2.0739 0 0 699.3005073952845 0 699.3005073952845 0 14.973024840566467 0 0 0 1 0 0 0 D[PG] 2.0739 - 10 + NaN NaN 104281.4 NaN 764 1296 2061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2063 22.579 NaN 26876 35 0 6112.7 0.261 + 11772 KEDIPGRHSY 10 19 601.3016750980944 1200.5887972629887 2 601.3017578125 MULTI HCD FTMS 0 0 0 2061 21423.54296875 1 0 0 2 Unmodified _KEDIPGRHSY_ ENSG00000163751|ENST00000296046|CPA3 2.498486711656943 0.462078817294651 2 WW{I|L} 3 9 10.458 0 0 0.87104 0 0 0 712.3160204656572 712.3160204656572 10.45757490560675 0 0 0 0 0 0 0 0 WW{I|L} 0.87104 - 1 + NaN NaN 102120.9 NaN 765 1296 2061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2064 22.583 NaN 27402 35 0 5978 0.261 + -1 WMLYQDRT 8 13 564.7607953461294 1127.5070377590587 2 564.7609252929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _WM(Oxidation (M))LYQDRT_ REV__ENSG00000145675|ENST00000521381|PIK3R1;REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF;REV__nc|ENSG00000145675|P27986-2|PIK3R1;REV__nc|ENSG00000145675|P27986-3|PIK3R1;REV__nc|ENSG00000145675|P27986-4|PIK3R1;REV__nc|ENSG00000145675|P27986-5|PIK3R1 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110218.6 NaN 766 1296 2061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2065 22.586 NaN 18805 35 0 6772.6 0.261 + 2018 DDDLLNLIHA 10 10 569.788330078125 NaN 0 569.788330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _DDDLLNLIHA_ nc|ENSG00000258628|A8MT19|RHPN2P1 0.4007161486938917 0.3398413315442166 2 G 1 10 6.9897 0 0 0.61445 0 0 568.7438230451188 508.7817476861938 1077.5255707313127 0 0 0 0 0 0 0 0 0 G 0.61445 - 1 + NaN NaN 94358.4 NaN 767 1296 2061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2067 22.592 NaN 25625 35 0 6063.8 0.411 + 12356 KNLDVTSRE 9 28 531.2828919171503 1060.5512309011006 2 531.2832641601562 MULTI HCD FTMS 0 0 0 2066 6858.64306640625 0.5456252869616289 12 -0.10634422302246094 1 Unmodified _KNLDVTSRE_ ENSG00000175984|ENST00000393274|DENND2C;nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C 1.844237919475145 0.33703635659052655 2 K 1 8 3.4949 0 0 0.32953 0 0 441.22427885207554 488.2112215631469 929.4355004152225 0 0 0 0 0 0 0 0 0 + K 0.32953 + + 1 + NaN NaN 110797.9 NaN 768 1297 2066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2069 22.6 NaN 25543 35 0 6503.5 0.327 -1 VEEQQRML 8 17 545.7634335073667 1089.5123140815333 2 545.76318359375 MULTI HCD FTMS 0 0 0 2068 14011.6259765625 0.6679607444301398 3 -0.02801513671875 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VEEQQRM(Oxidation (M))L_ ENST00000552545.1_1_12:53124746-53124836:+|nuORF 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104673.7 NaN 769 1298 2068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2070 22.604 NaN 31265 35 0 5102.7 0.261 + 2960 DYVRRKFR 8 21 570.3252656275623 NaN 0 570.3259887695312 PEAK HCD FTMS 0 0 0 2068 2104.98486328125 0.3663203978854919 -4 0.04296875 2 Unmodified _DYVRRKFR_ ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12 0.6903765706972694 0.38822285293237185 2 {M(Oxidation (M))|F} 1 7 6.9897 0 0 0.61387 0 0 569.8179984408683 418.76813684635005 988.5861352872184 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.61387 + + 1 + NaN NaN 88437 NaN 770 1298 2068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2072 22.61 NaN 184420 35 0 14206 0.327 + 28477 TPNHVEHTL 9 49 524.2642491584878 1046.5139453837755 2 524.2643432617188 MULTI HCD FTMS 0 0 0 2071 74273.09375 0.9374642298597593 1 -0.009950637817382812 1 Unmodified _TPNHVEHTL_ ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-1|TNS1;TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant 36.506200033944 0.08138327636155518 2 [TP]NH{NN|[MP]|[D{I|L}]|[EV]}HT{I|L} 9 0 + 31.461 0 0 3.0063 3.0063 85.356 0 0 0 15.263480968738467 2.604765324935702 2.604765324935702 9.208187539523752 0 1.7302046884880937 0 0.8807196863200843 0 + + [TP]NH{NN|[MP]|[D{I|L}]|[EV]}HT{I|L};[TP]GGH{NN|[MP]|[D{I|L}]|[EV]}HT{I|L};[{M(Oxidation (M))|F}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}P[TP];{[QG]|[NA]}[H{I|L}][NP]SP[TP] 3.0063;2.1264;0.99412;0.87474 +;-;-;- + 120 + NaN NaN 113824.3 NaN 771 1299 2071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2073 22.614 NaN 71195 35 0 11553 0.261 + 3371 EEQSAIGRT 9 32 495.74607994160164 989.4776069500033 2 495.7460021972656 MULTI HCD FTMS 0 0 0 2071 20337.078125 0.5798397700550828 7 -0.06020355224609375 2 Unmodified _EEQSAIGRT_ REV__ENSG00000165164|ENST00000378653|CFAP47;REV__nc|ENSG00000165164|Q6ZTR5-1|CFAP47;REV__nc|ENSG00000165164|Q6ZTR5-2|CFAP47;REV__nc|ENSG00000165164|Q6ZTR5-6|CFAP47 2.9952420565917617 0.3283108881486655 2 T{I|L}Q 3 -1 13.812 0 0 1.3959 0 0 192.12508117050953 452.14191614322505 644.2669973137346 0 0 0 0 0 0 0 0 0 T{I|L}Q 1.3959 - 24 + NaN NaN 92775.5 NaN 772 1299 2071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2075 22.62 NaN 27985 35 0 3647.5 0.412 + -1 HGKELEIMH 9 28 555.2744140625 NaN 0 555.2744140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _HGKELEIM(Oxidation (M))H_ REV__ENSG00000107186|ENST00000319217|MPDZ;REV__ENST00000539508.5_1_9:13136054-13190160:-|nuORF;REV__nc|ENSG00000107186|O75970-2|MPDZ;REV__nc|ENSG00000107186|O75970-3|MPDZ;REV__nc|ENSG00000107186|O75970-5|MPDZ 0.5247636613948944 0.2927039108006614 2 E 1 -1 2.4743 0 0 0.2234 0 0 775.6998023908219 199.7574404352172 975.4572428260391 0 0 0 0 0 0 0 0 0 E 0.2234 + + 1 + NaN NaN 96990.1 NaN 773 1300 2074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2077 22.628 NaN 61673 35 0 8085.7 0.327 + 21956 QELEGMRS 8 38 475.2239495703555 948.433346207511 2 475.2234802246094 MULTI HCD FTMS 0 0 0 2076 24545.029296875 0.09335137717600536 107 -1.1104507446289062 1 Unmodified _QELEGMRS_ ENSG00000042832|ENST00000220616|TG;nc|ENSG00000042832|P01266-2|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant 6.723162845929126 0.5320176132289695 2 VM{[QD]|[EN]|[WG]|[KD]|[RS]} 4 5 15.674 0 0 1.6526 0 0 457.1811304141584 0 457.1811304141584 0 5.2165251409206075 0 0 0 0 0 0.4247425010840047 0 VM{[QD]|[EN]|[WG]|[KD]|[RS]} 1.6526 - 36 + NaN NaN 93890.3 NaN 774 1301 2076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2078 22.632 NaN 70379 35 0 11479 0.261 -1 PKQMNIPGG 9 40 479.24472102950546 NaN 0 479.2589111328125 PEAK HCD FTMS 0 0 0 2076 4901.951171875 1 0 0 2 Oxidation (M) _PKQM(Oxidation (M))NIPGG_ ENSG00000135269|ENST00000358204|TES;nc|ENSG00000135269|Q9UGI8-2|TES 2.302733041254933 0.2840881193086663 2 {I|L} 1 -1 6.9897 0 0 0.73078 0 0 614.2846863443641 226.08310877017814 840.3677951145422 0 0 0 0 0 0 0 0 0 {I|L} 0.73078 + + 1 + NaN NaN 95994.9 NaN 775 1301 2076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2083 22.66 NaN 131240 35 0 10300 0.327 + 18894 NAESGRGQVM 10 42 524.7454328916376 1047.4763128500751 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2082 51282.7421875 0.05156568309061822 33 -0.3597736358642578 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 24.881564428377168 0.27837825820855233 2 VM 2 8 25.969 0 0 2.4792 0 0 799.3544052211113 0 799.3544052211113 0 2.456903350432924 0 0 0 0.5 0 0 0 + VM 2.4792 + + 70 NaN NaN 123438.7 NaN 776 1305 2082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2084 22.664 NaN 44794 35 0 9147 0.261 + 33458 YHCIFRYK 8 28 565.283935546875 NaN 0 565.283935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YHCIFRYK_ ENSG00000069122|ENST00000283296|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;nc|ENSG00000069122|Q8IZF2-3|ADGRF5 0.7936320650641473 0.38822285293237185 2 D 1 8 6.4659 0 0 0.57294 0 0 563.699439549025 446.79303919010005 1010.4924787391251 0 0 0 0 0 0 0 0.4247425010840047 0 D 0.57294 - 1 + NaN NaN 91760.2 NaN 777 1305 2082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2086 22.67 NaN 22672 35 0 3869.9 0.411 + 30771 VPPLLLLGLVV 11 28 566.8885283236131 NaN 0 567.26806640625 PEAK HCD FTMS 0 0 0 2085 4002.07470703125 1 0 0 1 Unmodified _VPPLLLLGLVV_ ENSG00000206013|ENST00000382614|IFITM5 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96041.7 NaN 778 1306 2085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2088 22.678 NaN 56673 35 0 14581 0.327 -1 NAAHQEALM 9 24 500.7294615782505 999.444370223301 2 500.7295837402344 MULTI HCD FTMS 0 0 0 2087 36544.39453125 0.16605181082951384 44 -0.45717620849609375 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 12.240655878213236 0.2545997876781172 2 A{I|L}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.6218 0 0 650.2741566388687 0 650.2741566388687 0 30.713337517843655 0 0 0 1 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.6218 + + 13 NaN NaN 105178.2 NaN 779 1307 2087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2089 22.682 NaN 51998 35 0 9292.6 0.261 -1 0 20 485.3586279650348 484.35135149843484 1 485.3584899902344 MULTI HCD FTMS 0 0 0 2087 8611.2314453125 0.10988412166833535 75 -0.7626152038574219 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.95057 0 0 131.3885046740192 202.90940271549064 334.2979073895099 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.95057 - 1 + NaN NaN 103276.3 NaN 780 1307 2087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2091 22.688 NaN 29549 35 0 6469.8 0.327 -1 MSENMQCLV 9 24 564.2300912298044 NaN 0 564.22998046875 PEAK HCD FTMS 0 0 0 2090 2144.223876953125 0.1821069266867273 13 -0.14011192321777344 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))SENMQC(Carbamidomethyl (C))LV_ chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82913.9 NaN 781 1308 2090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2092 22.692 NaN 19872 35 0 4648.3 0.261 + -1 IVIVRPAMCD 10 19 587.3102416992188 NaN 0 587.3102416992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _IVIVRPAMC(Carbamidomethyl (C))D_ REV__ENSG00000131634|ENST00000566264|TMEM204 0.4007161486938917 0.3398413315442166 2 N 1 -1 5.4846 0 0 0.46772 0 0 585.8210092755875 469.72529016666255 1055.54629944225 0 0 0 0 0 0 0 0 0 N 0.46772 - 2 + NaN NaN 108945.6 NaN 782 1308 2090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2094 22.698 NaN 15154 35 0 2917.7 0.411 -1 ATEALKKMYM 10 21 601.3016750980944 1200.5887972629887 2 601.3018188476562 MULTI HCD FTMS 0 0 0 2093 6064.28271484375 0.28306628477323154 13 -0.14359474182128906 1 Oxidation (M) _ATEALKKM(Oxidation (M))YM_ ENSG00000006007|ENST00000353258|GDE1 1.4819007175156935 0.4674597685733628 2 WW{I|L} 3 -1 10.458 0 0 0.87104 0 0 0 712.3144218604455 712.3144218604455 6.478174818886375 0 0 0 0 0 0 0 0 WW{I|L} 0.87104 - 2 + NaN NaN 107032.4 NaN 783 1309 2093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2096 22.706 NaN 32829 35 0 5941 0.411 + -1 FFVMPAACVP 10 37 569.7772068674524 NaN 0 569.7882080078125 PEAK HCD FTMS 0 0 0 2095 3072.087158203125 1 0 0 1 Carbamidomethyl (C) _FFVMPAAC(Carbamidomethyl (C))VP_ REV__ENSG00000215182|ENST00000621226|MUC5AC;REV__MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant 1.844237919475145 0.33860587697544825 2 VA 2 -1 9.464 0 0 0.83197 0 0 346.12599469017965 618.2860201471311 964.4120148373108 0 0 0 0 0 0 0 0 0 VA 0.83197 - 4 + NaN NaN 93109.5 NaN 784 1310 2095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2098 22.714 NaN 39255 35 0 5523.6 0.327 + 10850 IVFLYEED 8 26 514.2531200776307 1026.4916872220613 2 514.2532958984375 MULTI HCD FTMS 0 0 0 2097 13058.279296875 0.8552700152202328 -4 0.03601646423339844 1 Unmodified _IVFLYEED_ REV__ENSG00000183862|ENST00000329903|CNGA2 2.302733041254933 0.5385759549224092 2 G 1 -1 1.9897 0 0 0.19383 0 0 512.7728284347551 453.6796053522094 966.4524337869645 0 0 0 0 0 0 0 0 0 G 0.19383 - 3 + NaN NaN 107478.2 NaN 785 1311 2097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2099 22.718 NaN 43497 35 0 6761.9 0.261 + 2272 DLLVLGHPYI 10 33 570.325150159301 NaN 0 570.3251342773438 PEAK HCD FTMS 0 0 0 2097 4824.6943359375 0.7157192675233977 1 -0.0099334716796875 2 Unmodified _DLLVLGHPYI_ REV__ENSG00000102172|ENST00000404933|SMS;REV__ENST00000454078.1_1_6:71318605-71318935:-|nuORF 1.844237919475145 0.33860587697544825 2 A 1 -1 6.9897 0 0 0.61387 0 0 446.28822648872057 618.2824801080686 1064.5707065967893 0 0 0 0 0 0 0 0 0 A 0.61387 - 2 + NaN NaN 108900.6 NaN 786 1311 2097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2103 22.739 NaN 32255 35 0 5317.4 0.327 + 2079 DESNVAVTR 9 20 495.74607994160164 989.4776069500033 2 495.74591064453125 MULTI HCD FTMS 0 0 0 2102 4197.3515625 0.11967261717151625 22 -0.2595710754394531 1 Unmodified _DESNVAVTR_ ENSG00000138286|ENST00000242505|FAM149B1;ENST00000533428.2_1_15:97300531-97301611:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 84637.6 NaN 787 1314 2102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2104 22.743 NaN 29486 35 0 5144.6 0.261 + 22166 QKVLLSNEY 9 17 547.2980392919196 1092.5815256506392 2 547.2979736328125 MULTI HCD FTMS 0 0 0 2102 8156.2333984375 0.5243160210761407 -4 0.0329742431640625 2 Unmodified _QKVLLSNEY_ REV__ENSG00000115942|ENST00000234296|ORC2 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87783.1 NaN 788 1314 2102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2105 22.747 NaN 26291 35 0 11384 0.261 + 36003 YYYYCTFRWRH 11 11 553.2504538385302 NaN 0 553.250244140625 PEAK HCD FTMS 0 0 0 2102 4958.06103515625 0.9350852963789823 -1 0.007381439208984375 3 Unmodified _YYYYCTFRWRH_ REV__ENSG00000204577|ENST00000445347|LILRB3;REV__ENSG00000244482|ENST00000396365|LILRA6;REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF;REV__nc|ENSG00000204577|O75022-2|LILRB3;REV__nc|ENSG00000204577|O75022-3|LILRB3;REV__nc|ENSG00000204577|O75022|LILRB3;REV__nc|ENSG00000244482|Q6PI73|LILRA6 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84011.3 NaN 789 1314 2102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2107 22.752 NaN 37665 35 0 5446.1 0.411 + 164 AEKEVKGAVY 10 29 547.2980392919196 1092.5815256506392 2 547.2980346679688 MULTI HCD FTMS 0 0 0 2106 8239.431640625 0.5296643441528976 -3 0.028202056884765625 1 Unmodified _AEKEVKGAVY_ ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 6.630372943996041 0.44020808660041416 2 {[CP]|[EA]}KE 4 6 14.693 0 0 1.3448 0 0 0 632.3385103815061 632.3385103815061 14.69273760456403 0 0 0 0 0 0 0 0 + {[CP]|[EA]}KE 1.3448 + + 3 + NaN NaN 111326.8 NaN 790 1315 2106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2109 22.76 NaN 147440 35 0 43602 0.327 + 25050 SAALPQSQR 9 40 479.25916762355894 956.5037823139179 2 479.2589416503906 MULTI HCD FTMS 0 0 0 2108 76005.4921875 1 0 0 1 Unmodified _SAALPQSQR_ ENSG00000151474|ENST00000357447|FRMD4A 11.494710602746466 0.2610445893512368 2 {[SA]|[TG]}A{I|L} 4 5 30.445 0 0 3.183 0 0 0 611.2906032645279 611.2906032645279 22.998037644757048 0 0 0 0 1.4247425010840047 0 0 0 + {[SA]|[TG]}A{I|L} 3.183 + + 26 + NaN NaN 100421.7 NaN 791 1316 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2110 22.765 NaN 46156 35 0 6701.1 0.261 + 21926 QEAVERSM 8 24 475.2239495703555 948.433346207511 2 475.2236633300781 MULTI HCD FTMS 0 0 0 2108 19021.15625 0.07234259572236698 122 -1.2838096618652344 2 Unmodified _QEAVERSM_ REV__ENSG00000072134|ENST00000314728|EPN2;REV__ENST00000495155.5_1_17:19186396-19216987:+|nuORF;REV__EPN2|p.T470Nfs*19|1|0.3|ENSG00000072134|chr17:19329636-19329637|-/A|frameshift_variant;REV__nc|ENSG00000072134|O95208-2|EPN2;REV__nc|ENSG00000072134|O95208-3|EPN2 7.289230182591677 0.5311777711368266 2 VR{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 14.425 0 0 1.5209 0 0 457.1816810237204 0 457.1816810237204 0 3.4556125503637958 0 0 0 0 0 0.4247425010840047 0 VR{[MS]|[{M(Oxidation (M))|F}A]} 1.5209 - 11 + NaN NaN 112631.6 NaN 792 1316 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2111 22.768 NaN 54412 35 0 6642.6 0.261 + 31231 VVQEEKKKL 9 25 550.8373176799759 1099.6600824267516 2 550.8374633789062 MULTI HCD FTMS 0 0 0 2108 14412.32421875 0.21553150813960323 -9 0.08242988586425781 3 Unmodified _VVQEEKKKL_ TBC1D2B|p.I268V|1|0.12|ENSG00000167202|chr15:78030052-78030052|T/C|missense_variant 3.944395688203298 0.32111559684428237 2 KKV 3 7 14.693 0 0 1.3361 0 0 149.10718783950284 592.2744234674436 741.3816113069465 0 0 0 0 0 0 0 0 0 KKV 1.3361 - 7 + NaN NaN 95829.4 NaN 793 1316 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2112 22.772 NaN 43123 35 0 11266 0.261 + 4249 EVGKVIQQGR 10 23 557.321881843769 1112.629210754338 2 557.322509765625 MULTI HCD FTMS 0 0 0 2108 12491.271484375 0.8468455668634001 -3 0.028879165649414062 4 Unmodified _EVGKVIQQGR_ ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1 3.2813086475875832 0.45793521633868084 2 V{I|L} 2 8 8.5835 0 0 0.77146 0 0 413.2263309709379 484.2259920709594 897.4523230418973 0 0 0 0 0 0 0 0 0 + V{I|L} 0.77146 + + 5 + NaN NaN 88211.1 NaN 794 1316 2108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2114 22.777 NaN 21802 35 0 5566.6 0.327 + 15211 LNLHWFFFH 9 17 630.817600450769 NaN 0 630.8178100585938 PEAK HCD FTMS 0 0 0 2113 1856.5386962890625 0.43856669609906357 1 -0.010114669799804688 1 Unmodified _LNLHWFFFH_ REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89184.9 NaN 795 1317 2113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2115 22.782 NaN 36056 35 0 9640.7 0.261 -1 WFQEFCVI 8 20 564.7607326251792 NaN 0 564.7611694335938 PEAK HCD FTMS 0 0 0 2113 4748.642578125 0.7200578402529512 2 -0.017732620239257812 2 Carbamidomethyl (C) _WFQEFC(Carbamidomethyl (C))VI_ ENST00000323851.11_1_8:134249992-134250097:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100355 NaN 796 1317 2113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2118 22.795 NaN 48259 35 0 5175.1 0.327 + 18895 NAESGRGQVM 10 23 524.7454328916376 1047.4763128500751 2 524.7455444335938 MULTI HCD FTMS 0 0 0 2117 32590.76171875 0.03277057385750613 47 -0.5030403137207031 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 10.799506525563784 0.4100970765206026 2 VM 2 8 25.969 0 0 2.4792 0 0 799.35746962715 0 799.35746962715 0 20.48455006504028 0 0 0 0.5 0 0 0 + VM 2.4792 + + 4 NaN NaN 90736.7 NaN 797 1319 2117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2119 22.799 NaN 54142 35 0 7294 0.262 -1 PYMNYINFVT 10 25 426.53380848590325 1276.5795960579098 3 426.5338439941406 MULTI HCD FTMS 0 0 0 2117 14075.326171875 0.715975082132949 -5 0.05578804016113281 2 Oxidation (M) _PYM(Oxidation (M))NYINFVT_ ENST00000558140.5_1_15:60802666-60820892:+|nuORF 0.6976657623105312 0.47161084886498755 2 {[CA]|SS}S 3 -1 10.458 0 0 0.81919 0 0 0 1012.4617668093642 1012.4617668093642 10.45757490560675 0 0 0 0 0 0 0 0 {[CA]|SS}S 0.81919 - 2 + NaN NaN 91354.7 NaN 798 1319 2117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2120 22.803 NaN 26653 35 0 5302.8 0.261 + -1 KCCCICLW 8 19 543.2241032681766 NaN 0 543.337646484375 PEAK HCD FTMS 0 0 0 2117 2871.133056640625 0.5350946290065913 3 -0.04679298400878906 3 2 Carbamidomethyl (C) _KCCC(Carbamidomethyl (C))IC(Carbamidomethyl (C))LW_ REV__ENSG00000137261|ENST00000378214|KIAA0319;REV__nc|ENSG00000137261|Q5VV43-2|KIAA0319;REV__nc|ENSG00000137261|Q5VV43-3|KIAA0319 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87649.7 NaN 799 1319 2117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2121 22.806 NaN 16379 35 0 5134.1 0.261 + 32536 WHMRKKPR 8 8 569.824660771775 NaN 0 569.8244018554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _WHMRKKPR_ ENST00000243643.8_1_19:53619685-53636133:-|nuORF;ENST00000600120.5_1_19:53619685-53636050:-|nuORF 0 0.38822285293237185 2 G 1 8 6.9897 0 0 0.61441 0 0 568.8138590417938 508.7812594049438 1077.5951184467376 0 0 0 0 0 0 0 0 0 G 0.61441 - 1 + NaN NaN 101396.8 NaN 800 1319 2117 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2123 22.811 NaN 65196 35 0 28666 0.327 + 33024 YCFEILYKQR 10 18 454.9006393967861 NaN 0 454.90069580078125 PEAK HCD FTMS 0 0 0 2122 42813.5390625 0.5048338975575015 432 -4.99315071105957 1 Unmodified _YCFEILYKQR_ REV__ENSG00000066185|ENST00000372565|ZMYND12;REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112344.6 NaN 801 1320 2122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2124 22.816 NaN 58264 35 0 10538 0.261 -1 0 25 469.32875614411586 468.32147967751587 1 469.3287048339844 MULTI HCD FTMS 0 0 0 2122 12476.884765625 0.6827619250994885 1 -0.01677703857421875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113466.4 NaN 802 1320 2122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2125 22.819 NaN 31376 35 0 4892.3 0.261 + 31706 VYLATQGKVD 10 14 547.2980392919196 1092.5815256506392 2 547.2981567382812 MULTI HCD FTMS 0 0 0 2122 5423.42236328125 0.3486397574983245 2 -0.030218124389648438 3 Unmodified _VYLATQGKVD_ REV__ENSG00000065802|ENST00000264607|ASB1 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88762.4 NaN 803 1320 2122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2126 22.823 NaN 25807 35 0 9350.2 0.261 -1 IHICYHVCHYE 11 13 510.8915751805306 NaN 0 510.7580871582031 PEAK HCD FTMS 0 0 0 2122 1699.629150390625 1 0 0 4 2 Carbamidomethyl (C) _IHIC(Carbamidomethyl (C))YHVC(Carbamidomethyl (C))HYE_ ENST00000547963.1_1_12:114182810-114183011:-|nuORF 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91070.2 NaN 804 1320 2122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2128 22.828 NaN 45461 35 0 10015 0.327 -1 NAAHQEALM 9 18 500.7294615782505 999.444370223301 2 500.7291564941406 MULTI HCD FTMS 0 0 0 2127 23631.96484375 0.10737982134054724 58 -0.5889244079589844 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 12.240655878213236 0.2545997876781172 2 A{I|L}{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.5465 0 0 650.2745228498062 0 650.2745228498062 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.5465 + + 12 NaN NaN 106095.6 NaN 805 1321 2127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2129 22.833 NaN 30988 35 0 5123.2 0.261 -1 TAVKNDYEM 9 17 543.742179236445 1085.46980553969 2 543.7421875 MULTI HCD FTMS 0 0 0 2127 14824.556640625 0.03628722353208092 -16 0.16806983947753906 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 2.9952420565917617 0.3283108881486655 2 V[PG] 3 -1 10.458 0 0 0.96341 0 0 814.3163929669937 0 814.3163929669937 0 10.45757490560675 0 0 0 0 0 0 0 V[PG] 0.96341 - 1 NaN NaN 85401.4 NaN 806 1321 2127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2130 22.836 NaN 16326 35 0 4265.2 0.261 -1 FFCVGRLRF 9 18 601.3197589350261 NaN 0 601.3017578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FFC(Carbamidomethyl (C))VGRLRF_ ENST00000440896.2_1_11:59856214-59861079:+|nuORF 0.6014990680409731 0.29233206172879045 2 H 1 -1 5.4846 0 0 0.45681 0 0 839.2467738741553 221.30103479556877 1060.5478086697242 0 0 0 0 0 0 0 0 0 H 0.45681 - 1 + NaN NaN 91767 NaN 807 1321 2127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2132 22.842 NaN 155660 35 0 23417 0.327 + 8588 HAVQTVETM 9 39 516.2450266464824 1030.4755003597647 2 516.2448120117188 MULTI HCD FTMS 0 0 0 2131 56102.5546875 0.5977355703225418 -4 0.05441093444824219 1 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 40.23920728925047 0.06424668180817725 2 TVET{M(Oxidation (M))|F} 5 4 51.855 0 0 5.0321 0 0 435.2220936505875 0 435.2220936505875 0 47.250547101681875 0 0 0 1.8494850021680094 0 0.3807196863200844 0 + TVET{M(Oxidation (M))|F} 5.0321 + + 33 NaN NaN 110088.8 NaN 808 1322 2131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2133 22.846 NaN 55304 35 0 12557 0.261 -1 TAVKNDYEM 9 24 543.742179236445 1085.46980553969 2 543.741943359375 MULTI HCD FTMS 0 0 0 2131 18921.54296875 0.04631573651230341 -15 0.16351318359375 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 14.405379775768559 0.2358970535022398 2 YE{M(Oxidation (M))|F} 3 -1 27.435 0 0 2.5275 0 0 628.316698142775 0 628.316698142775 0 11.977437731477421 0 0 0 0.4247425010840047 0 0 0 YE{M(Oxidation (M))|F} 2.5275 + + 5 NaN NaN 95936.9 NaN 809 1322 2131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2136 22.859 NaN 26839 35 0 3872.5 0.326 + -1 RAPRRCCC 8 22 568.2559245343862 1134.4972961355722 2 568.2561645507812 MULTI HCD FTMS 0 0 0 2135 10277.419921875 0.7711524019306805 1 -0.00991058349609375 1 3 Carbamidomethyl (C) _RAPRRC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000578692.1_1_17:29124415-29151644:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92217 NaN 810 1324 2135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2137 22.864 NaN 37551 35 0 9690 0.261 + 23794 RRPFCRMH 8 22 551.7791102329295 1101.543667532659 2 553.2505493164062 MULTI HCD FTMS 0 0 0 2135 1456.3658447265625 0.22420166457095678 6 -0.06504440307617188 2 Unmodified _RRPFCRMH_ ENST00000375864.4_1_6:31638624-31639059:+|nuORF;ENST00000409525.1_1_6:31638888-31639059:+|nuORF 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100905 NaN 811 1324 2135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2139 22.869 NaN 29348 35 0 5733.7 0.411 + 30913 VRAETLEYL 9 19 547.2980392919196 1092.5815256506392 2 547.2975463867188 MULTI HCD FTMS 0 0 0 2138 8320.8388671875 0.5348975334245866 7 -0.07501602172851562 1 Unmodified _VRAETLEYL_ tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91502.2 NaN 812 1325 2138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2141 22.877 NaN 32744 35 0 5456.5 0.411 + 22167 QKVLLSNEY 9 24 547.2980392919196 1092.5815256506392 2 547.2978515625 MULTI HCD FTMS 0 0 0 2140 3351.9755859375 0.21547869170833206 8 -0.09177780151367188 1 Unmodified _QKVLLSNEY_ REV__ENSG00000115942|ENST00000234296|ORC2 0.5247636613948944 0.34703895399870666 2 M 1 -1 2.2185 0 0 0.20305 0 0 397.6867635430204 560.8347872369749 958.5215507799953 0 0 0 0 0 0 0 0 0 M 0.20305 - 1 + NaN NaN 102583.4 NaN 813 1326 2140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2143 22.885 NaN 36813 35 0 7886.9 0.411 -1 LLCFSCQMCMA 11 29 484.8515815047138 NaN 0 484.82965087890625 PEAK HCD FTMS 0 0 0 2142 1685.3514404296875 0.35432992721740836 -9 0.09808349609375 1 3 Carbamidomethyl (C),2 Oxidation (M) _LLC(Carbamidomethyl (C))FSC(Carbamidomethyl (C))QM(Oxidation (M))C(Carbamidomethyl (C))M(Oxidation (M))A_ ENSG00000159433|ENST00000290607|STARD9 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115192.8 NaN 814 1327 2142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2145 22.893 NaN 92846 35 0 10000 0.327 + 3349 EENKLVKKI 9 37 550.8373176799759 1099.6600824267516 2 550.8372192382812 MULTI HCD FTMS 0 0 0 2144 57574.21875 0.8610032642065538 3 -0.040882110595703125 1 Unmodified _EENKLVKKI_ ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7 18.1463463914782 0.20357593197100715 2 KK[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]KK{I|L} 7 5 23.728 0 0 2.1578 0 0 149.10592228659112 0 149.10592228659112 0 23.728269624704694 0 0 0 0.7742275032520141 0 0 0 KK[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]KK{I|L} 2.1578 - 26 + NaN NaN 103597.4 NaN 815 1328 2144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2146 22.898 NaN 54289 35 0 8202.1 0.261 + 28593 TQATRGPQV 9 35 479.25916762355894 956.5037823139179 2 479.259033203125 MULTI HCD FTMS 0 0 0 2144 13022.2265625 0.17133270488368285 12 -0.1499195098876953 2 Unmodified _TQATRGPQV_ ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A 5.731851221503515 0.3075653528928475 2 G{I|L}[NP] 4 8 21.198 0 0 2.2162 0 0 557.2884940832523 0 557.2884940832523 0 21.197887582883936 0 0 0 0.5 0 0 0 G{I|L}[NP] 2.2162 - 13 + NaN NaN 97561.4 NaN 816 1328 2144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2147 22.901 NaN 41339 35 0 5600.3 0.261 + 3305 EEGQLRSM 8 33 475.2239495703555 948.433346207511 2 475.2232971191406 MULTI HCD FTMS 0 0 0 2144 13479.419921875 0.051265875384427416 134 -1.3964805603027344 3 Unmodified _EEGQLRSM_ REV__ENST00000454678.6_1_6:30166895-30168914:-|nuORF 2.302733041254933 0.5385759549224092 2 V 1 -1 6.9897 0 0 0.73697 0 0 457.18165050614226 389.16193567447505 846.3435861806173 0 0 0 0 0 0 0 0 0 V 0.73697 - 2 + NaN NaN 91985.9 NaN 817 1328 2144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2148 22.905 NaN 53387 35 0 5036.2 0.261 + -1 CISNCHKKL 9 31 551.7791102329295 1101.543667532659 2 551.7778930664062 MULTI HCD FTMS 0 0 0 2144 9795.08984375 0.8397252379069081 1 -0.023237228393554688 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))ISNCHKKL_ REV__ENSG00000129810|ENST00000412997|SGO1;REV__nc|ENSG00000129810|Q5FBB7|SGO1 1.844237919475145 0.33703635659052655 2 KKY 3 -1 11.972 0 0 1.0869 0 0 149.98887971705614 529.2963350885374 679.2852148055936 0 0 0 0 0 0 0 0 0 KKY 1.0869 - 9 + NaN NaN 94144.9 NaN 818 1328 2144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2149 22.908 NaN 28089 35 0 6026 0.261 -1 MSENMQCLV 9 20 564.2300189929443 NaN 0 564.2300415039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))SENMQC(Carbamidomethyl (C))LV_ chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89155.6 NaN 819 1328 2144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2150 22.911 NaN 14654 35 0 2587.9 0.261 + -1 NIHSYPLEGTM 11 16 639.2974853515625 NaN 0 639.2974853515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _NIHSYPLEGTM(Oxidation (M))_ REV__ENSG00000132155|ENST00000251849|RAF1;REV__nc|ENSG00000132155|P04049-2|RAF1 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91483.9 NaN 820 1328 2144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2153 22.924 NaN 35749 35 0 5825.2 0.327 + 18896 NAESGRGQVM 10 25 524.7454328916376 1047.4763128500751 2 524.7454223632812 MULTI HCD FTMS 0 0 0 2152 17498.78125 0.017595326808196574 58 -0.5820846557617188 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 4.5288652416199255 0.4513317009562028 2 VM 2 8 20.969 0 0 2.0019 0 0 799.3601930370932 0 799.3601930370932 0 15.484550065040281 0 0 0 0 0 0 0 + VM 2.0019 + + 4 NaN NaN 92723.3 NaN 821 1330 2152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2154 22.929 NaN 28592 35 0 11512 0.261 -1 YCLYWSTL 8 14 553.2542724609375 NaN 0 553.2542724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))LYWSTL_ ENSG00000183862|ENST00000329903|CNGA2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90589.9 NaN 822 1330 2152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2156 22.934 NaN 30527 35 0 5133.5 0.327 + -1 RYKKKQLQWIM 11 27 513.2961719062982 NaN 0 513.2958374023438 PEAK HCD FTMS 0 0 0 2155 7398.4736328125 1 0 0 1 Oxidation (M) _RYKKKQLQWIM(Oxidation (M))_ REV__ENSG00000197006|ENST00000358154|METTL9;REV__nc|ENSG00000197006|Q9H1A3-2|METTL9 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90227.3 NaN 823 1331 2155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2157 22.939 NaN 38408 35 0 14895 0.261 + 32548 WHYWDDCD 8 14 570.1979844362968 1138.3814159393935 2 570.1979370117188 MULTI HCD FTMS 0 0 0 2155 3912.26953125 0.2787848539870169 -5 0.057003021240234375 2 Unmodified _WHYWDDCD_ REV__ENSG00000165632|ENST00000344293|TAF3 0 0.5419923896992614 2 D 1 -1 4.6041 0 0 0.40444 0 0 811.9984641345092 208.3351992242797 1020.3336633587888 0 0 0 0 0 0 0 0 0 D 0.40444 + + 1 + NaN NaN 107529.5 NaN 824 1331 2155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2159 22.944 NaN 110770 35 0 29309 0.327 + -1 YIPRDLCVPA 10 39 401.8778842771242 NaN 0 401.8778076171875 PEAK HCD FTMS 0 0 0 2158 40220.078125 0.40040412415073456 554 -7.038454055786133 1 Carbamidomethyl (C) _YIPRDLC(Carbamidomethyl (C))VPA_ REV__ENSG00000104332|ENST00000220772|SFRP1;REV__ENSG00000120057|ENST00000266066|SFRP5 0.776531954647913 0.3395196853010637 2 R 1 -1 1.1092 0 0 0.13835 0 0 457.8569515603047 184.76400171451408 642.6209532748188 0 0 0 0 0 0 0 0 0 R 0.13835 + + 1 + NaN NaN 103071.7 NaN 825 1332 2158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2160 22.949 NaN 45906 35 0 4976.4 0.261 -1 0 25 471.21964668034036 940.4247404274807 2 471.219482421875 MULTI HCD FTMS 0 0 0 2158 23670.1015625 1 0 0 2 NaN NaN 2 A{I|L} 2 -1 20.969 0 0 2.2297 0 0 738.2906971662125 0 738.2906971662125 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 2.2297 - 1 NaN NaN 95389.1 NaN 826 1332 2158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2161 22.952 NaN 30790 35 0 5466.2 0.261 + -1 VMCVKECYS 9 19 559.7369662324422 1117.4593795316844 2 559.7367553710938 MULTI HCD FTMS 0 0 0 2158 9106.3154296875 0.42591382541933814 -9 0.09248924255371094 3 Carbamidomethyl (C) _VMC(Carbamidomethyl (C))VKECYS_ REV__ENST00000460796.1_1_3:156893176-156957565:+|nuORF;REV__ENST00000475102.1_1_3:156948072-156957565:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98840.7 NaN 827 1332 2158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2162 22.955 NaN 27892 35 0 10702 0.261 -1 WDEKLCLM 8 18 527.2401733398438 NaN 0 527.2401733398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _WDEKLCLM(Oxidation (M))_ KCNJ5|p.R211W|1|0.22|ENSG00000120457|chr11:128911904-128911904|C/T|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88454.7 NaN 828 1332 2158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2164 22.961 NaN 41123 35 0 7968.7 0.411 -1 NAAHQEALM 9 28 500.7294615782505 999.444370223301 2 500.72943115234375 MULTI HCD FTMS 0 0 0 2163 15337.1328125 0.06968944783776851 70 -0.7185115814208984 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 17.11289562659939 0.2125047172822487 2 A{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.1221 0 0 650.274644736776 0 650.274644736776 0 35.713337517843655 0 0 0 1.5 0 0 0 A{I|L}{M(Oxidation (M))|F} 4.1221 + + 31 + NaN NaN 105546.4 NaN 829 1333 2163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2166 22.969 NaN 457650 35 0 60615 0.327 + 27797 TAVKNDYEM 9 52 543.742179236445 1085.46980553969 2 543.7421875 MULTI HCD FTMS 0 0 0 2165 368336.125 0.9016050615765328 -3 0.0347747802734375 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 121.34585337138759 0.001129813327125052 2 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 107.44 0 0 9.8984 9.8984 94.09 0 0 0 9.730749808046326 9.730749808046326 9.730749808046326 9.208187539523749 0 3.024227503252014 1.3010299956639813 1.610924374808178 0 + + [TA]VKNDYE{M(Oxidation (M))|F};[TA]VKGGDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]NDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]GGDYE{M(Oxidation (M))|F} 9.8984;9.0501;5.2081;4.3598 +;-;-;- + 169 + NaN NaN 169472.4 NaN 830 1334 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2167 22.973 NaN 143480 35 0 19955 0.261 + 8589 HAVQTVETM 9 30 516.2450266464824 1030.4755003597647 2 516.2451782226562 MULTI HCD FTMS 0 0 0 2165 54766.3984375 0.5834997102519535 8 -0.09051132202148438 2 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 49.55428908609986 0.03219431099695407 2 TVET{M(Oxidation (M))|F} 5 4 55.974 0 0 5.4319 0 0 435.2226449904272 0 435.2226449904272 0 50.48963451112506 0 0 0 2.2302046884880937 0 0.3494850021680094 0 + TVET{M(Oxidation (M))|F} 5.4319 + + 42 + NaN NaN 99348.6 NaN 831 1334 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2168 22.977 NaN 29381 35 0 5280.8 0.261 + 2530 DSSGLTVHR 9 17 486.2488798000131 970.4832066668263 2 486.2485656738281 MULTI HCD FTMS 0 0 0 2165 20666.44140625 0.8667225848622783 -1 0.008235931396484375 3 Unmodified _DSSGLTVHR_ ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF 5.731851221503515 0.3075653528928475 2 HR 2 7 20.969 0 0 2.1607 0 0 659.3137558385044 0 659.3137558385044 0 20.969100130080562 0 0 0 0 0 0 0 + HR 2.1607 + + 11 + NaN NaN 116624.1 NaN 832 1334 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2169 22.98 NaN 38579 35 0 5297.7 0.261 + 25404 SENELKKAY 9 25 541.2798593525011 1080.5451657718022 2 541.2801513671875 MULTI HCD FTMS 0 0 0 2165 28264.32421875 0.9457768844158049 -2 0.024806976318359375 4 Unmodified _SENELKKAY_ ENSG00000069345|ENST00000317089|DNAJA2 6.2057823575117 0.30397260197431997 2 {[ES]|[DT]|[{I|L}C]}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}K 6 3 4.8945 0 0 0.45297 0 0 0 377.18247400455317 377.18247400455317 3.3007560848118107 0 0 0 0 0 0 0 0 + {[ES]|[DT]|[{I|L}C]}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}K 0.45297 + + 7 + NaN NaN 85038.5 NaN 833 1334 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2170 22.983 NaN 28918 35 0 8092.3 0.261 + 29686 VCIPQCCTNQ 10 16 554.7329714214784 NaN 0 554.7327270507812 PEAK HCD FTMS 0 0 0 2165 3703.3828125 0.5531705464191848 -3 0.0347747802734375 5 Unmodified _VCIPQCCTNQ_ REV__ENSG00000187272|ENST00000254072|KRTAP9-8 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102572.6 NaN 834 1334 2165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2173 22.998 NaN 23182 35 0 2754.3 0.411 -1 FVNDDRHVM 9 34 574.7612630502404 1147.5079731672806 2 574.76123046875 MULTI HCD FTMS 0 0 0 2172 7997.81201171875 0.10103156753094 -18 0.21140098571777344 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 10.799506525563784 0.2670509983294061 2 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6962 0 0 883.3924427716812 0 883.3924427716812 0 19.463950151760656 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6962 + + 3 NaN NaN 95854.2 NaN 835 1336 2172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2175 23.007 NaN 55191 35 0 4987.5 0.327 + -1 RIDEYEEM 8 35 550.7315063816101 1099.44845983002 2 550.7320556640625 MULTI HCD FTMS 0 0 0 2174 24577.43359375 0.9618216975162992 -1 0.008005142211914062 1 Oxidation (M) _RIDEYEEM(Oxidation (M))_ REV__ENSG00000116984|ENST00000366577|MTR;REV__nc|ENSG00000116984|Q99707-2|MTR 11.640296217721598 0.50814828952472 2 E{M(Oxidation (M))|F} 2 -1 30.701 0 0 2.7924 0 0 805.3559743337295 0 805.3559743337295 0 21.74865027867405 0 0 0 1 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 2.7924 + + 10 + NaN NaN 100527.8 NaN 836 1337 2174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2176 23.011 NaN 55820 35 0 7182.3 0.261 + 8844 HLKEAQAR 8 33 476.77007540492787 951.5255978766558 2 476.769775390625 MULTI HCD FTMS 0 0 0 2174 14957.609375 0.97192627504552 1 -0.01326751708984375 2 Unmodified _HLKEAQAR_ ENSG00000146950|ENST00000380913|SHROOM2 11.640296217721598 0.50814828952472 2 H{I|L}A 3 5 50.445 0 0 5.3015 0 0 0 627.3215426080686 627.3215426080686 50.44531259372398 0 0 0 0 0.4247425010840047 2 0 0 H{I|L}A 5.3015 - 9 + NaN NaN 111517.2 NaN 837 1337 2174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2177 23.014 NaN 34134 35 0 8444.4 0.261 + -1 LYQGCFAY 8 22 511.2267973278565 NaN 0 510.7581481933594 PEAK HCD FTMS 0 0 0 2174 4309.7470703125 0.40917168985520197 12 -0.11064338684082031 3 Carbamidomethyl (C) _LYQGC(Carbamidomethyl (C))FAY_ REV__ENSG00000174145|ENST00000309447|NWD2 0.6903765706972694 0.38822285293237185 2 N 1 -1 3.4949 0 0 0.34248 0 0 492.53756574770676 410.8410738580688 903.3786396057756 0 0 0 0 0 0 0 0 0 N 0.34248 - 1 + NaN NaN 93335 NaN 838 1337 2174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2179 23.02 NaN 38792 35 0 4570.2 0.327 -1 0 27 479.25916762355894 956.5037823139179 2 479.2586669921875 MULTI HCD FTMS 0 0 0 2178 7330.421875 0.09644594968106232 22 -0.2075977325439453 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94771.6 NaN 839 1338 2178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2180 23.024 NaN 34507 35 0 11914 0.261 + -1 SMTTPTPPSS 10 24 511.2287797276641 NaN 0 511.22760009765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _SM(Oxidation (M))TTPTPPSS_ REV__ENST00000542565.1_1_12:124970985-124979836:-|nuORF 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100769.3 NaN 840 1338 2178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2182 23.03 NaN 81922 35 0 9974.2 0.327 + 28717 TSSAVTSVAK 10 29 475.76122911394083 949.5079052946817 2 475.76104736328125 MULTI HCD FTMS 0 0 0 2181 25066.203125 0.06340637163608538 -17 0.18845176696777344 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 7.608950283845883 0.4350283211712914 2 V 1 9 4.6041 0 0 0.48489 0 0 458.25575182964104 389.16221033267817 847.4179621623192 0 0 0 0 0 0 0 0 0 + V 0.48489 + + 6 + NaN NaN 98110.8 NaN 841 1339 2181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2183 23.034 NaN 34043 35 0 4504.9 0.261 + 18897 NAESGRGQVM 10 26 524.7454328916376 1047.4763128500751 2 524.7465209960938 MULTI HCD FTMS 0 0 0 2181 21256.96484375 0.02137424532786399 67 -0.6923274993896484 2 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 6.1918466704503565 0.44252927588099017 2 VM 2 8 16.198 0 0 1.5464 0 0 799.3544789044937 0 799.3544789044937 0 0.7403126772771866 0 0 0 0 0 0 0 + VM 1.5464 + + 2 NaN NaN 82809.3 NaN 842 1339 2181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2184 23.038 NaN 36213 35 0 11802 0.261 + 23471 RLSHVFVH 8 26 497.78186212089366 NaN 0 497.7814636230469 PEAK HCD FTMS 0 0 0 2181 4818.25732421875 0.601172579418846 -1 0.010189056396484375 3 Unmodified _RLSHVFVH_ ENST00000470101.1_1_X:19378869-19390989:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87983.6 NaN 843 1339 2181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2186 23.043 NaN 60794 35 0 12930 0.411 -1 0 35 400.35052490234375 NaN 0 400.35052490234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93862.2 NaN 844 1340 2185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2188 23.051 NaN 42727 35 0 3776.2 0.411 + 18898 NAESGRGQVM 10 34 524.7454328916376 1047.4763128500751 2 524.74609375 MULTI HCD FTMS 0 0 0 2187 9564.0986328125 0.009616866378632054 69 -0.7022552490234375 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 21.590151480376914 0.30916502439568466 2 {[QG]|[NA]}ES 4 6 30.872 0 0 2.9473 0 0 0 643.2997130788439 643.2997130788439 6.17931555708239 0 0 0 0 1 0 0.3807196863200844 0.3252574989159953 + {[QG]|[NA]}ES 2.9473 + + 12 NaN NaN 118055.5 NaN 845 1341 2187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2190 23.059 NaN 44993 35 0 16000 0.411 + -1 GCDSRDEDDA 10 27 570.1979844362968 1138.3814159393935 2 570.1975708007812 MULTI HCD FTMS 0 0 0 2189 6391.02978515625 0.45541910935573693 6 -0.04965782165527344 1 Carbamidomethyl (C) _GC(Carbamidomethyl (C))DSRDEDDA_ REV__ENSG00000125388|ENST00000398052|GRK4;REV__nc|ENSG00000125388|P32298-2|GRK4;REV__nc|ENSG00000125388|P32298-3|GRK4;REV__nc|ENSG00000125388|P32298-4|GRK4 0.4007161486938917 0.47318265037741464 2 G 1 -1 3.4949 0 0 0.307 0 0 569.56339278213 508.7794283502563 1078.3428211323862 0 0 0 0 0 0 0 0 0 G 0.307 + + 1 + NaN NaN 102071.4 NaN 846 1342 2189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2192 23.068 NaN 78195 35 0 18835 0.411 + -1 VVRALCFCW 9 39 404.19991288337553 1209.5779092503267 3 404.19952392578125 MULTI HCD FTMS 0 0 0 2191 11259.8974609375 0.3474207011741477 -7 0.06899642944335938 1 2 Carbamidomethyl (C) _VVRALC(Carbamidomethyl (C))FC(Carbamidomethyl (C))W_ REV__ENST00000329073.8_1_12:132627816-132627993:-|nuORF 5.296884461304476 0.3108627248283497 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 116886.4 NaN 847 1343 2191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2195 23.083 NaN 32143 35 0 6524.4 0.327 -1 NIQNHDIM 8 23 500.7294615782505 999.444370223301 2 500.7294921875 MULTI HCD FTMS 0 0 0 2194 12323.7548828125 0.0559971465051957 82 -0.8371467590332031 1 Oxidation (M) _NIQNHDIM(Oxidation (M))_ ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3 12.531546534597751 0.5015908124873912 2 {I|L}{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.0986 0 0 721.3136156840417 0 721.3136156840417 0 28.494850021680094 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 3.0986 + + 5 + NaN NaN 92126.9 NaN 848 1345 2194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2196 23.087 NaN 35813 35 0 9461.5 0.261 -1 PCKHRCMN 8 14 559.7369662324422 1117.4593795316844 2 559.7366333007812 MULTI HCD FTMS 0 0 0 2194 11990.7666015625 0.5608232344261304 4 -0.03406333923339844 2 2 Carbamidomethyl (C),Oxidation (M) _PC(Carbamidomethyl (C))KHRC(Carbamidomethyl (C))M(Oxidation (M))N_ ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-2|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT;nc|ENSG00000168743|Q6UXI9-4|NPNT;nc|ENSG00000168743|Q6UXI9-5|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93991.3 NaN 849 1345 2194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2198 23.093 NaN 344220 35 0 44989 0.411 + 27798 TAVKNDYEM 9 65 543.742179236445 1085.46980553969 2 543.7421875 MULTI HCD FTMS 0 0 0 2197 279459.9375 0.6840558855253784 9 -0.07629776000976562 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 121.34585337138759 0.001129813327125052 2 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 115.67 0 0 10.656 10.656 94.478 0 0 0 14.572034164243561 14.572034164243561 14.572034164243561 9.208187539523749 0 3.1237125054200234 1.5228787452803376 1.9361818737241734 0 + + [TA]VKNDYE{M(Oxidation (M))|F};[TA]VKGGDYE{M(Oxidation (M))|F};[TA]VKND[{M(Oxidation (M))|F}E]Y;{[QV]|[N{I|L}]|[RA]|[KV]}[TA]NDYE{M(Oxidation (M))|F};[TA]VKGGD[{M(Oxidation (M))|F}E]Y;{[QV]|[N{I|L}]|[RA]|[KV]}[TA]GGDYE{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]ND[{M(Oxidation (M))|F}E]Y;[{M(Oxidation (M))|F}E]Y[DN]KV[TA] 10.656;9.808;5.8849;5.3156;5.0366;4.4673;1.8867;0.63049 +;-;-;-;-;-;-;- + 283 + NaN NaN 185808.2 NaN 850 1346 2197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2200 23.101 NaN 66651 35 0 20067 0.411 -1 FMCHRRQAIK 10 38 454.9006393967861 NaN 0 454.900634765625 PEAK HCD FTMS 0 0 0 2199 24616.17578125 0.2902605165265065 459 -5.61836051940918 1 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))C(Carbamidomethyl (C))HRRQAIK_ ENSG00000126856|ENST00000449207|PRDM7;ENSG00000164256|ENST00000296682|PRDM9 2.0860074813731053 0.33839895573887124 2 G 1 -1 3.0989 0 0 0.34137 0 0 299.9918172683785 547.7532442682249 847.7450615366033 0 0 0 0 0 0 0 0 0 G 0.34137 - 1 + NaN NaN 103574.9 NaN 851 1347 2199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2202 23.109 NaN 79856 35 0 6900.5 0.411 -1 HAVQTVETM 9 55 516.2450266464824 1030.4755003597647 2 516.244873046875 MULTI HCD FTMS 0 0 0 2201 16702.55078125 0.17795461851394295 22 -0.22439193725585938 1 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 26.268140514670165 0.13340543277302316 2 ET{M(Oxidation (M))|F} 3 -1 29.169 0 0 2.8306 0 0 635.3384086192223 0 635.3384086192223 0 14.47621246364342 0 0 0 0.9247425010840047 0 0 0 ET{M(Oxidation (M))|F} 2.8306 + + 20 NaN NaN 118129 NaN 852 1348 2201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2204 23.117 NaN 90506 35 0 11304 0.327 -1 FVNDDRHVM 9 30 574.7612630502404 1147.5079731672806 2 574.7611694335938 MULTI HCD FTMS 0 0 0 2203 70981.7265625 0.8966696254118114 -5 0.041614532470703125 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 34.93206674587334 0.08860942999206235 2 {M(Oxidation (M))|F}VNDDRHV{M(Oxidation (M))|F} 9 -1 + 62.145 0 0 5.4157 5.4157 87.562 0 0 0 51.17599686953518 9.889917747712644 9.889917747712644 9.208187539523749 0 1.2302046884880937 0 0 0 {M(Oxidation (M))|F}VNDDRHV{M(Oxidation (M))|F};{M(Oxidation (M))|F}VGGDDRHV{M(Oxidation (M))|F};[YT]HRD[NP]V{M(Oxidation (M))|F} 5.4157;4.6132;3.1254 +;-;- + 120 + NaN NaN 114677.3 NaN 853 1349 2203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2205 23.122 NaN 66349 35 0 8854.7 0.262 -1 0 23 469.32880675924343 468.32153029264344 1 469.3282775878906 MULTI HCD FTMS 0 0 0 2203 12213.2236328125 0.6793763879412621 -39 0.41119384765625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87369.9 NaN 854 1349 2203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2207 23.127 NaN 45051 35 0 5732.7 0.411 -1 QSVDFQTEM 9 39 550.7315063816101 1099.44845983002 2 550.7314453125 MULTI HCD FTMS 0 0 0 2206 9152.7890625 0.3581883795768263 12 -0.12482070922851562 1 Oxidation (M) _QSVDFQTEM(Oxidation (M))_ SYNE1|p.I4887V|1|0.21|ENSG00000131018|chr6:152330026-152330026|T/C|missense_variant 13.042465956692817 0.2476723265019929 2 E{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7483 0 0 805.3607655255875 0 805.3607655255875 0 19.75895023531386 0 0 0 0.9247425010840047 0 0 0 E{M(Oxidation (M))|F} 2.7483 + + 14 NaN NaN 99551.2 NaN 855 1350 2206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2209 23.135 NaN 19809 35 0 5349 0.411 -1 LCAAWCIMA 9 29 527.7289112617932 1053.4432695903863 2 527.728515625 MULTI HCD FTMS 0 0 0 2208 6889.66064453125 0.8128669992944028 2 -0.016096115112304688 1 Carbamidomethyl (C),Oxidation (M) _LCAAWC(Carbamidomethyl (C))IM(Oxidation (M))A_ ENST00000369503.8_1_1:116577809-116577836:+|nuORF 2.302733041254933 0.33356062215410776 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WT]|[RM]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 + 0.91515 0 0 0.086872 0.086872 80.076 0 0 0 0.9151498112134981 0.9151498112134981 0.9151498112134981 0.9151498112134981 0 0 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WT]|[RM]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MS]|[{M(Oxidation (M))|F}A]} 0.086872 - 3 + NaN NaN 106402 NaN 856 1351 2208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2211 23.143 NaN 31632 35 0 5447.9 0.411 -1 SCLHDSMEM 9 28 563.2040737250701 1124.39359451694 2 563.2041625976562 MULTI HCD FTMS 0 0 0 2210 5550.7890625 0.3624151762225374 -11 0.09183311462402344 1 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))LHDSMEM(Oxidation (M))_ CEP85L|p.K221Nfs*32|1|0.27|ENSG00000111860|chr6:118565886-118565886|T/-|frameshift_variant;ENSG00000111860|ENST00000368491|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF;nc|ENSG00000111860|Q5SZL2-2|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L 7.289230182591677 0.29575926068275815 2 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.2427 0 0 830.3026592200367 0 830.3026592200367 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 2.2427 + + 4 NaN NaN 90516.2 NaN 857 1352 2210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2213 23.151 NaN 600160 35 0 90594 0.327 + 28718 TSSAVTSVAK 10 48 475.76122911394083 949.5079052946817 2 475.7610778808594 MULTI HCD FTMS 0 0 0 2212 349428.09375 0.8838980304242382 -3 0.0240936279296875 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 59.368380827593164 0.04371880213842136 2 {[MG]|[TS]}SAVT 6 4 46.956 0 0 4.9453 0 0 0 400.22016535314333 400.22016535314333 11.717042969019289 0 0 0 0 1.805462187404089 0 0.5 0 + {[MG]|[TS]}SAVT 4.9453 + + 131 + NaN NaN 181002 NaN 858 1353 2212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2214 23.156 NaN 17601 35 0 4554.7 0.261 -1 HCERFLCI 8 17 588.7669677734375 NaN 0 588.7669677734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))HC(Carbamidomethyl (C))ERFLC(Carbamidomethyl (C))I_ ENSG00000170961|ENST00000303924|HAS2;HAS2|p.W187Mfs*26|1|0.25|ENSG00000170961|chr8:121628782-121628783|-/T|frameshift_variant 0.6903765706972694 0.38822285293237185 2 {I|L} 1 -1 4.6041 0 0 0.39166 0 0 423.87212148261875 635.5262545221311 1059.39837600475 0 0 0 0 0 0 0 0 0 {I|L} 0.39166 + + 2 + NaN NaN 98680.5 NaN 859 1353 2212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2216 23.161 NaN 10454 35 0 1396 0.411 + 30213 VIEELYQYF 9 19 602.3016428797704 NaN 0 602.3013305664062 PEAK HCD FTMS 0 0 0 2215 1768.47021484375 0.36155698947401627 2 -0.017950057983398438 1 Unmodified _VIEELYQYF_ REV__tr|U7SF12|U7SF12_FUSNUCRISPRsystemCmsproteinCsm2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02354PE=3SV=1 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86729.4 NaN 860 1354 2215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2218 23.169 NaN 65143 35 0 8616.8 0.327 -1 IQHEKETM 8 30 516.2450266464824 1030.4755003597647 2 516.2595825195312 MULTI HCD FTMS 0 0 0 2217 6137.9453125 0.06539574289284916 29 -0.28886985778808594 1 Oxidation (M) _IQHEKETM(Oxidation (M))_ ENST00000510337.1_1_5:122971848-122972142:+|nuORF 3.944395688203298 0.5361403129012058 2 E[{M(Oxidation (M))|F}T] 3 -1 12.205 0 0 1.1844 0 0 635.3395863263687 0 635.3395863263687 0 5.215299873086609 0 0 0 0.3252574989159953 0 0 0 E[{M(Oxidation (M))|F}T] 1.1844 + + 2 NaN NaN 96365.4 NaN 861 1355 2217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2219 23.174 NaN 7846.1 35 0 2329.9 0.261 -1 PCVQDWIFTV 10 7 632.8050650164975 1263.5955770997948 2 632.8054809570312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))VQDWIFTV_ ENSG00000148482|ENST00000377369|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;nc|ENSG00000148482|Q504Y0-5|SLC39A12 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90753 NaN 862 1355 2217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2221 23.179 NaN 41691 35 0 4618.7 0.411 -1 PSIMSAFFM 9 36 523.737272139567 1045.459991345934 2 524.2388305664062 MULTI HCD FTMS 0 0 0 2220 13243.1015625 0.46378645516910416 7 -0.08098411560058594 1 Oxidation (M) _PSIMSAFFM(Oxidation (M))_ ENSG00000144671|ENST00000448498|SLC22A14;ENST00000496724.1_1_3:38347478-38348849:+|nuORF 4.3292370932331545 0.3181982124262546 2 [PS]SEND 6 -1 18.077 0 0 1.7291 0 0 0 413.21347986392817 413.21347986392817 -2.892047051987344 0 -2.892047051987344 0 0 0 0 0.3807196863200844 0 [PS]SEND 1.7291 - 20 + NaN NaN 90679.3 NaN 863 1356 2220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2223 23.187 NaN 29436 35 0 4158.7 0.327 + 15336 LPCGFLWM 8 23 483.73170192639185 965.4488509195837 2 483.7311706542969 MULTI HCD FTMS 0 0 0 2222 13805.19921875 0.9262897644909078 -1 0.008062362670898438 1 Unmodified _LPCGFLWM_ REV__ENSG00000178921|ENST00000314666|PFAS 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88163.6 NaN 864 1357 2222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2224 23.192 NaN 70099 35 0 12309 0.261 + -1 VDCCEMRCK 9 33 400.8257256931261 NaN 0 400.34991455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))C(Carbamidomethyl (C))EMRCK_ REV__ENSG00000214530|ENST00000334805|STARD10;REV__ENST00000535267.1_1_11:72470267-72492328:-|nuORF;REV__ENST00000538437.5_1_11:72466777-72492157:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99393 NaN 865 1357 2222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2226 23.197 NaN 100440 35 0 32797 0.327 + -1 VVRALCFCW 9 34 404.19991288337553 1209.5779092503267 3 404.1996154785156 MULTI HCD FTMS 0 0 0 2225 16627.33984375 0.513031498485378 8 -0.10046005249023438 1 2 Carbamidomethyl (C) _VVRALC(Carbamidomethyl (C))FC(Carbamidomethyl (C))W_ REV__ENST00000329073.8_1_12:132627816-132627993:-|nuORF 5.296884461304476 0.3108627248283497 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92070.6 NaN 866 1358 2225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2227 23.202 NaN 33219 35 0 5287.9 0.261 + -1 CWGEHTYF 8 25 550.2174346566968 NaN 0 550.2171020507812 PEAK HCD FTMS 0 0 0 2225 8974.5302734375 0.45465280644462924 -139 1.4382572174072266 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 2 C 1 -1 3.0989 0 0 0.28213 0 0 730.3063159913248 262.0815523736938 992.3878683650187 0 0 0 0 0 0 0 0 0 C 0.28213 + + 1 + NaN NaN 85653 NaN 867 1358 2225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2228 23.205 NaN 28474 35 0 5203.6 0.261 + -1 RCWPFCHRCWK 11 16 545.9133044373079 NaN 0 545.9129638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))WPFC(Carbamidomethyl (C))HRCWK_ REV__ENSG00000187537|ENST00000547848|POTEG;REV__ENSG00000187537|ENST00000547848|POTEG;REV__ENSG00000222036|ENST00000547889|POTEM;REV__ENSG00000222036|ENST00000547889|POTEM;REV__nc|ENSG00000187537|Q6S5H5-2|POTEG;REV__nc|ENSG00000187537|Q6S5H5-2|POTEG;REV__nc|ENSG00000187537|Q6S5H5-4|POTEG;REV__nc|ENSG00000187537|Q6S5H5-4|POTEG;REV__POTEG|p.G44Afs*11|1|0.07|ENSG00000187537|chr14:19434159-19434159|C/-|frameshift_variant 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83573.5 NaN 868 1358 2225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2229 23.209 NaN 15944 35 0 5817.2 0.261 -1 PYECEKCGK 9 15 585.749790737163 NaN 0 585.7506103515625 PEAK HCD FTMS 0 0 0 2225 5232.3525390625 0.9278386363673753 -3 0.028013229370117188 4 2 Carbamidomethyl (C) _PYEC(Carbamidomethyl (C))EKC(Carbamidomethyl (C))GK_ ENSG00000105750|ENST00000328178|ZNF85;nc|ENSG00000105750|Q03923-2|ZNF85 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91243.6 NaN 869 1358 2225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2230 23.212 NaN 16397 35 0 3987.1 0.261 + -1 TYRINQQMY 9 17 616.7904124429219 NaN 0 616.7897338867188 PEAK HCD FTMS 0 0 0 2225 5119.0166015625 1 0 0 5 Oxidation (M) _TYRINQQM(Oxidation (M))Y_ REV__ENSG00000170558|ENST00000269141|CDH2;REV__nc|ENSG00000170558|P19022-2|CDH2 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87933.8 NaN 870 1358 2225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2232 23.217 NaN 26800 35 0 6355.5 0.327 + 26329 SSASSVTVTR 10 20 497.7618971198292 993.5092413064584 2 497.76202392578125 MULTI HCD FTMS 0 0 0 2231 10899.2822265625 0.38865297191315407 -5 0.0558929443359375 1 Unmodified _SSASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 4.189502756095605 0.45312800054222196 2 V 1 9 6.9897 0 0 0.70354 0 0 419.17002119102716 472.2507723443969 891.4207935354241 0 0 0 0 0 0 0 0 0 + V 0.70354 + + 11 + NaN NaN 80860.4 NaN 871 1359 2231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2233 23.222 NaN 13386 35 0 3616.2 0.261 -1 LIARCNMEEP 10 13 616.7904124429219 NaN 0 616.7906494140625 PEAK HCD FTMS 0 0 0 2231 4948.931640625 0.9667738993294954 1 -0.010189056396484375 2 Carbamidomethyl (C) _LIARC(Carbamidomethyl (C))NMEEP_ ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3-2|EML5;nc|ENSG00000165521|Q05BV3-4|EML5;nc|ENSG00000165521|Q05BV3|EML5 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109981 NaN 872 1359 2231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2235 23.227 NaN 61123 35 0 19899 0.411 -1 YCRLCHVQRK 10 31 454.9006393967861 NaN 0 454.9007873535156 PEAK HCD FTMS 0 0 0 2234 26426.748046875 0.3116097970036624 472 -5.841768264770508 1 Carbamidomethyl (C) _YCRLC(Carbamidomethyl (C))HVQRK_ chrX:135762356-135764276|117|44.41|0.4|6.79|-|1|CT45A3,CT45A3|1;chrX:135796903-135798825|123|64.2|0.66|6.61|-|1|CT45A6,CT45A6|1 0.776531954647913 0.3395196853010637 2 Y 1 -1 1.5938 0 0 0.17557 0 0 549.8236043777536 191.8837832086547 741.7073875864082 0 0 0 0 0 0 0 0 0 Y 0.17557 + + 1 + NaN NaN 111349.8 NaN 873 1360 2234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2237 23.235 NaN 101130 35 0 14459 0.327 + 27799 TAVKNDYEM 9 27 543.742179236445 1085.46980553969 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2236 77572.1484375 0.18987939797818126 24 -0.23933029174804688 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 47.594388314883695 0.03493607795751234 2 [TA]VKN{[YD]|[{M(Oxidation (M))|F}M]}E{M(Oxidation (M))|F} 9 0 + 60.697 0 0 5.5917 5.5917 87.867 0 0 0 55.2119811855394 16.478174818886373 16.478174818886373 9.208187539523749 0 1.6989700043360187 0 1.2614393726401687 0 + + [TA]VKN{[YD]|[{M(Oxidation (M))|F}M]}E{M(Oxidation (M))|F};[TA]VKGG{[YD]|[{M(Oxidation (M))|F}M]}E{M(Oxidation (M))|F} 5.5917;4.7434 +;- + 31 + NaN NaN 97938.1 NaN 874 1361 2236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2238 23.24 NaN 77126 35 0 12510 0.261 + 7409 FVNDDRHVM 9 26 574.7612630502404 1147.5079731672806 2 574.76123046875 MULTI HCD FTMS 0 0 0 2236 53458.578125 0.6753101895906254 7 -0.08330917358398438 2 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 42.312485326615175 0.05472917415473307 2 {M(Oxidation (M))|F}VNDD[RH]V{M(Oxidation (M))|F} 9 0 + 56.946 0 0 4.9626 4.9626 86.897 0 0 0 43.23454345406198 7.208859094697573 7.208859094697573 9.208187539523749 0 2.0356668758921828 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}VNDD[RH]V{M(Oxidation (M))|F};{M(Oxidation (M))|F}VGGDD[RH]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]NDD[RH]V{M(Oxidation (M))|F};[YT][RH]D[NP]V{M(Oxidation (M))|F};[YT][NP]D[RH]V{M(Oxidation (M))|F} 4.9626;4.1601;2.904;2.5188;1.6401 +;-;+;-;- + 79 + NaN NaN 99540 NaN 875 1361 2236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2239 23.243 NaN 41600 35 0 11324 0.462 + 18899 NAESGRGQVM 10 29 524.7454328916376 1047.4763128500751 2 524.7457885742188 MULTI HCD FTMS 0 0 0 2236 11126.01953125 0.011187404821505601 89 -0.9261608123779297 3 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98660.7 NaN 876 1361 2236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2241 23.252 NaN 28595 35 0 4832.3 0.411 + 18900 NAESGRGQVM 10 27 524.7454328916376 1047.4763128500751 2 524.74609375 MULTI HCD FTMS 0 0 0 2240 7029.95849609375 0.007068744698253065 90 -0.9341487884521484 1 Unmodified _NAESGRGQVM_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001|IL32 6.630372943996041 0.44020808660041416 2 VM 2 8 20.969 0 0 2.0019 0 0 799.3563099591812 0 799.3563099591812 0 10.511525224473813 0 0 0 0 0 0 0 + VM 2.0019 + + 4 NaN NaN 94629.4 NaN 877 1362 2240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2243 23.26 NaN 31968 35 0 5596.3 0.327 -1 TVEDPHRM 8 21 500.7294615782505 999.444370223301 2 500.7296447753906 MULTI HCD FTMS 0 0 0 2242 11366.041015625 0.05164544978281519 100 -1.0430183410644531 1 Oxidation (M) _TVEDPHRM(Oxidation (M))_ ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B 4.75600775471527 0.5349361699807423 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.5231 0 0 721.3187123029312 0 721.3187123029312 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5231 - 2 NaN NaN 88113.2 NaN 878 1363 2242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2244 23.265 NaN 15960 35 0 3875.5 0.261 + 22215 QLSCCALTTKT 11 16 584.7887361238984 NaN 0 584.7891845703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QLSCCALTTKT_ REV__ENST00000551843.5_1_12:92380228-92380465:-|nuORF 0 0.34212014346876374 2 Q 1 -1 2.4743 0 0 0.21192 0 0 844.9321342577592 191.54889856510002 1036.4810328228593 0 0 0 0 0 0 0 0 0 Q 0.21192 + + 1 + NaN NaN 92899 NaN 879 1363 2242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2246 23.27 NaN 355450 35 0 49529 0.327 + 28719 TSSAVTSVAK 10 44 475.76122911394083 949.5079052946817 2 475.76104736328125 MULTI HCD FTMS 0 0 0 2245 206634.234375 0.5226929260958512 8 -0.08647346496582031 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 51.41523569358685 0.07264263333115425 2 {[MG]|[TS]}SAVT 6 4 45.52 0 0 4.7941 0 0 0 400.2213533990844 400.2213533990844 24.573507628719344 0 0 0 0 1.75 0 0.5 0 + {[MG]|[TS]}SAVT 4.7941 + + 64 + NaN NaN 147368.3 NaN 880 1364 2245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2247 23.275 NaN 54015 35 0 6875.4 0.261 + 14164 LAHADEKSL 9 29 492.26127910453164 982.5080052758633 2 492.26123046875 MULTI HCD FTMS 0 0 0 2245 21174.59375 1 0 0 2 Unmodified _LAHADEKSL_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 5.296884461304476 0.3108627248283497 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104583.2 NaN 881 1364 2245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2248 23.278 NaN 34116 35 0 4160.9 0.261 -1 SCLHDSMEM 9 19 563.2040737250701 1124.39359451694 2 563.2042846679688 MULTI HCD FTMS 0 0 0 2245 12264.046875 0.800728807987303 1 -0.019884109497070312 3 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))LHDSMEM(Oxidation (M))_ CEP85L|p.K221Nfs*32|1|0.27|ENSG00000111860|chr6:118565886-118565886|T/-|frameshift_variant;ENSG00000111860|ENST00000368491|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF;nc|ENSG00000111860|Q5SZL2-2|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L 1.844237919475145 0.33703635659052655 2 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8649 0 0 830.3039417951187 0 830.3039417951187 0 20.969100130080562 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.8649 + + 1 NaN NaN 96617.4 NaN 882 1364 2245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2249 23.281 NaN 19697 35 0 5140.8 0.261 + -1 YQLRTMCK 8 12 558.2704614855068 NaN 0 558.2705688476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _YQLRTM(Oxidation (M))C(Carbamidomethyl (C))K_ REV__ENST00000497924.5_1_9:37349441-37354806:+|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103472.5 NaN 883 1364 2245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2250 23.285 NaN 9745.2 35 0 4188.6 0.261 + 28089 THKCRMSRW 9 8 602.7950439453125 NaN 0 602.7950439453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _THKCRMSRW_ REV__ENSG00000182484|ENST00000359512|WASH6P;REV__nc|ENSG00000234769|A8MWX3|WASH4P 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89553.3 NaN 884 1364 2245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2252 23.29 NaN 56568 35 0 12677 0.326 -1 REECYVCCEC 10 28 469.8331500645261 NaN 0 469.8330993652344 PEAK HCD FTMS 0 0 0 2251 7405.677734375 0.3898000403605806 207 -2.2408599853515625 1 3 Carbamidomethyl (C) _REEC(Carbamidomethyl (C))YVC(Carbamidomethyl (C))C(Carbamidomethyl (C))EC_ ENSG00000204514|ENST00000435989|ZNF814;ENSG00000269343|ENST00000594901|ZNF587B;nc|ENSG00000269343|E7ETH6|ZNF587B 0.12286491777506015 0.3400791336886836 2 N 1 -1 3.0989 0 0 0.3305 0 0 523.4671596487804 297.11017786197505 820.5773375107553 0 0 0 0 0 0 0 0 0 N 0.3305 - 1 + NaN NaN 97808.9 NaN 885 1365 2251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2254 23.298 NaN 86781 35 0 25231 0.327 + 20490 PCPSAQFQVVK 11 32 401.8778842771242 NaN 0 401.8779296875 PEAK HCD FTMS 0 0 0 2253 38018.796875 0.3784896443186374 588 -7.818338394165039 1 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 2 P 1 -1 1.9897 0 0 0.24817 0 0 320.36458095483596 381.3003328912719 701.6649138461079 0 0 0 0 0 0 0 0 0 P 0.24817 + + 1 + NaN NaN 106560.7 NaN 886 1366 2253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2255 23.302 NaN 38582 35 0 5730.6 0.261 + 16002 LPRCLCPAS 9 21 480.2431913838308 958.4718298344616 2 480.24334716796875 MULTI HCD FTMS 0 0 0 2253 10841.6103515625 0.49796660884018523 -9 0.11045646667480469 2 Unmodified _LPRCLCPAS_ nc|ENSG00000162888|Q96MC9|IKBKE-AS1 1.844237919475145 0.33703635659052655 2 AS 2 7 19.464 0 0 2.0307 0 0 782.3934803693375 0 782.3934803693375 0 19.463950151760656 0 0 0 0 0 0 0 + AS 2.0307 + + 1 NaN NaN 105926.9 NaN 887 1366 2253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2256 23.306 NaN 11614 35 0 4874.5 0.261 -1 MLTAVSVARDC 11 10 632.8050650164975 1263.5955770997948 2 632.804443359375 MULTI HCD FTMS 0 0 0 2253 6554.00341796875 1 0 0 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MLTAVSVARDC(Carbamidomethyl (C))_ ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ENST00000484023.1_1_3:194151670-194152613:-|nuORF;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3 0.3070304955306653 0.41757413505135293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86149.1 NaN 888 1366 2253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2261 23.333 NaN 32278 35 0 5461.2 0.327 + 19351 NPDESSKPNM 10 21 559.7427673532259 1117.4709817732517 2 559.743408203125 MULTI HCD FTMS 0 0 0 2260 16389.263671875 0.4149774497992345 -13 0.1461811065673828 1 Unmodified _NPDESSKPNM_ ENSG00000171557|ENST00000336098|FGG;nc|ENSG00000171557|P02679-2|FGG 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 107944.7 NaN 889 1370 2260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2262 23.338 NaN 70744 35 0 9807.9 0.262 -1 0 33 469.32880675924343 468.32153029264344 1 469.3285827636719 MULTI HCD FTMS 0 0 0 2260 14038.9892578125 0.7809369662809041 -18 0.19025611877441406 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92529.4 NaN 890 1370 2260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2264 23.343 NaN 29083 35 0 5810.2 0.327 + 26330 SSASSVTVTR 10 17 497.7618971198292 993.5092413064584 2 497.7618713378906 MULTI HCD FTMS 0 0 0 2263 20311.5 0.7242793309613874 7 -0.06553459167480469 1 Unmodified _SSASSVTVTR_ ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-3|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-5|LMNA 2.498486711656943 0.462078817294651 2 T 1 9 6.9897 0 0 0.70354 0 0 518.235145702746 371.20530115299067 889.4404468557366 0 0 0 0 0 0 0 0 0 + T 0.70354 + + 1 + NaN NaN 92166.9 NaN 891 1371 2263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2265 23.348 NaN 24240 35 0 5130.5 0.261 + 33071 YDIQYNWP 8 20 549.747905389279 1097.481257845358 2 549.7478637695312 MULTI HCD FTMS 0 0 0 2263 4940.4501953125 0.5148869283890823 3 -0.031421661376953125 2 Unmodified _YDIQYNWP_ REV__ENSG00000169679|ENST00000302759|BUB1;REV__nc|ENSG00000169679|O43683-2|BUB1;REV__nc|ENSG00000169679|O43683-3|BUB1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89646.1 NaN 892 1371 2263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2266 23.351 NaN 14097 35 0 4192.4 0.261 + -1 IMFWYNKQS 9 11 616.7899060162846 NaN 0 616.7899169921875 PEAK HCD FTMS 0 0 0 2263 4523.05078125 0.6102492294648301 5 -0.047504425048828125 3 Oxidation (M) _IM(Oxidation (M))FWYNKQS_ REV__ENST00000314970.10_1_4:185606637-185606834:+|nuORF 0.6014990680409731 0.29233206172879045 2 Q 1 -1 6.9897 0 0 0.56755 0 0 615.9100599800316 484.5830172174438 1100.4930771974755 0 0 0 0 0 0 0 0 0 Q 0.56755 + + 1 + NaN NaN 110848.1 NaN 893 1371 2263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2268 23.357 NaN 51805 35 0 5708.7 0.327 -1 TAVKNDYEM 9 22 543.742179236445 1085.46980553969 2 543.7421264648438 MULTI HCD FTMS 0 0 0 2267 40027.54296875 0.09797853887694875 35 -0.3737525939941406 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 23.789781309258295 0.1548179064208189 2 E{M(Oxidation (M))|F} 2 -1 34.464 0 0 3.175 0 0 791.3818671625401 0 791.3818671625401 0 13.26606256887672 0 0 0 0.9247425010840047 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 3.175 + + 11 + NaN NaN 106307.1 NaN 894 1372 2267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2269 23.361 NaN 33226 35 0 10153 0.261 + -1 LFLCCLRP 8 15 511.2690753346591 1020.5235977361182 2 511.7709045410156 MULTI HCD FTMS 0 0 0 2267 1725.4803466796875 0.15338034463816516 -9 0.09645652770996094 2 Carbamidomethyl (C) _LFLCC(Carbamidomethyl (C))LRP_ REV__ENST00000290231.10_1_20:44690715-44691024:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93256.6 NaN 895 1372 2267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2271 23.367 NaN 22294 35 0 3239.9 0.411 -1 FVNDDRHVM 9 28 574.7612630502404 1147.5079731672806 2 574.7611083984375 MULTI HCD FTMS 0 0 0 2270 12402.23046875 0.15666994714327137 19 -0.19091033935546875 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 11.494710602746466 0.2610445893512368 2 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6962 0 0 883.3931751935562 0 883.3931751935562 0 12.474250108400469 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6962 + + 8 NaN NaN 91936.1 NaN 896 1373 2270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2273 23.375 NaN 26261 35 0 4383.8 0.411 + 32479 WEPHCPAIP 9 23 525.2471741640602 NaN 0 525.2466430664062 PEAK HCD FTMS 0 0 0 2272 4277.79248046875 0.5858537839609926 14 -0.1314697265625 1 Unmodified _WEPHCPAIP_ ENST00000216068.8_1_22:39175031-39175319:-|nuORF 2.0597508629832335 0.2852655770354268 2 E 1 8 5.4846 0 0 0.5231 0 0 186.0894888537078 730.3309420221311 916.420430875839 0 0 0 0 0 0 0 0 0 + E 0.5231 + + 1 + NaN NaN 96336.4 NaN 897 1374 2272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2275 23.383 NaN 30021 35 0 5401.2 0.411 -1 NAAHQEALM 9 30 500.7294615782505 999.444370223301 2 500.7294006347656 MULTI HCD FTMS 0 0 0 2274 17789.416015625 0.08083222559531202 112 -1.1666908264160156 1 Oxidation (M) _NAAHQEALM(Oxidation (M))_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 12.240655878213236 0.2545997876781172 2 A{I|L}{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.6218 0 0 650.275194236525 0 650.275194236525 0 36.197887582883936 0 0 0 1 0 0 0 A{I|L}{M(Oxidation (M))|F} 3.6218 + + 12 NaN NaN 91513.9 NaN 898 1375 2274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2277 23.391 NaN 140650 35 0 16888 0.411 + 28720 TSSAVTSVAK 10 49 475.76122911394083 949.5079052946817 2 475.76116943359375 MULTI HCD FTMS 0 0 0 2276 53296.7734375 0.13481718817685392 20 -0.19994354248046875 1 Unmodified _TSSAVTSVAK_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 37.07464296494664 0.1707926854601146 2 {[MG]|[TS]}SAVT 6 4 44.328 0 0 4.6685 0 0 0 400.21991907291255 400.21991907291255 35.11439372640169 0 0 0 0 1.6307196863200843 0 0.5 0 + {[MG]|[TS]}SAVT 4.6685 + + 87 + NaN NaN 127119.7 NaN 899 1376 2276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2279 23.399 NaN 97391 35 0 14131 0.327 -1 0 29 493.5585398410027 1477.6537901232082 3 493.55877685546875 MULTI HCD FTMS 0 0 0 2278 22286.42578125 0.1713230757145402 -10 0.08806037902832031 1 NaN NaN 2 {M(Oxidation (M))|F}S 2 -1 9.464 0 0 0.64047 0 0 54.03335248122841 1186.5266350677925 1240.559987549021 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}S 0.64047 - 3 + NaN NaN 97435.7 NaN 900 1377 2278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2280 23.403 NaN 38131 35 0 11543 0.261 + 31347 VWWLAPNAP 9 22 527.279296875 NaN 0 527.279296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VWWLAPNAP_ REV__ENSG00000215009|ENST00000399422|ACSM4 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88490.3 NaN 901 1377 2278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2282 23.409 NaN 17802 35 0 5670.2 0.411 + 19317 NNEEVMQKV 9 22 545.7634574593958 1089.5123619855915 2 545.7634887695312 MULTI HCD FTMS 0 0 0 2281 3646.21337890625 0.2580689519700336 -18 0.18158912658691406 1 Unmodified _NNEEVMQKV_ REV__nc|ENSG00000263155|P0CAP1-4|MYZAP;REV__nc|ENSG00000263155|P0CAP1-9|MYZAP 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86172.2 NaN 902 1378 2281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2285 23.425 NaN 31701 35 0 5529.3 0.412 + 22993 RAEGHPDSLK 10 36 555.2883176870141 1108.5620824408281 2 555.2880249023438 MULTI HCD FTMS 0 0 0 2284 15243.8779296875 0.8284126226148761 -5 0.04164886474609375 1 Unmodified _RAEGHPDSLK_ ENSG00000143217|ENST00000368012|NECTIN4 2.498486711656943 0.462078817294651 2 [W{I|L}]GG 4 9 16.198 0 0 1.4612 0 0 0 692.3442476861936 692.3442476861936 13.433677739595034 0 0 0 0 0 0 0 0 [W{I|L}]GG 1.4612 - 5 + NaN NaN 97502.1 NaN 903 1380 2284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2287 23.433 NaN 58082 35 0 18926 0.411 + 22656 QWLHAHHPLHS 11 28 454.9006393967861 NaN 0 454.9005432128906 PEAK HCD FTMS 0 0 0 2286 29173.375 0.34399652373182216 493 -6.335487365722656 1 Unmodified _QWLHAHHPLHS_ ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101233.4 NaN 904 1381 2286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2289 23.441 NaN 11529 35 0 5749.2 0.327 + -1 TCCGELQVLNK 11 8 632.8044361361515 NaN 0 632.8041381835938 PEAK HCD FTMS 0 0 0 2288 2009.342529296875 0.32289609807436975 1 -0.009973526000976562 1 Carbamidomethyl (C) _TCC(Carbamidomethyl (C))GELQVLNK_ REV__ENSG00000060140|ENST00000075503|STYK1 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80238.8 NaN 905 1382 2288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2290 23.445 NaN 31298 35 0 10030 0.262 + 34971 YSQYNRIL 8 20 528.7756865935895 1055.536820253979 2 528.77490234375 MULTI HCD FTMS 0 0 0 2288 4036.660400390625 0.6389684983173041 -1 0.008020401000976562 2 Unmodified _YSQYNRIL_ REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92307.9 NaN 906 1382 2288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2293 23.458 NaN 45750 35 0 5403.9 0.326 + 19352 NPDESSKPNM 10 21 559.7427673532259 1117.4709817732517 2 559.7428588867188 MULTI HCD FTMS 0 0 0 2292 33855.33203125 0.8572196792796596 1 -0.016553878784179688 1 Unmodified _NPDESSKPNM_ ENSG00000171557|ENST00000336098|FGG;nc|ENSG00000171557|P02679-2|FGG 18.721224879955976 0.3359999958351898 2 NPDESSK 7 3 51.943 0 0 4.6482 0 0 0 357.1239107721313 357.1239107721313 51.94283241038235 0 0 0 0 0.9247425010840047 0 0 0 + NPDESSK 4.6482 + + 25 + NaN NaN 102515.2 NaN 907 1384 2292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2294 23.463 NaN 53267 35 0 10369 0.262 -1 0 20 469.32880675924343 468.32153029264344 1 469.32861328125 MULTI HCD FTMS 0 0 0 2292 15415.2265625 0.8574919493974542 -4 0.033611297607421875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98563.8 NaN 908 1384 2292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2295 23.466 NaN 51791 35 0 11310 0.261 + -1 TWKVCIVHQMR 11 24 472.91127482406574 NaN 0 472.91131591796875 PEAK HCD FTMS 0 0 0 2292 17368.75 0.36567259982741085 686 -10.117645263671875 3 Oxidation (M) _TWKVCIVHQM(Oxidation (M))R_ REV__CEP135-DCAF13|1|fusion;REV__ENSG00000164934|ENST00000612750|DCAF13 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105131.2 NaN 909 1384 2292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2296 23.469 NaN 90910 35 0 12054 0.261 -1 0 27 400.3503448390606 NaN 0 400.3502502441406 PEAK HCD FTMS 0 0 0 2292 1281.926513671875 0.8672072841321893 1 -0.016553878784179688 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110014.6 NaN 910 1384 2292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2298 23.475 NaN 32314 35 0 5571.8 0.411 -1 0 23 485.3584719662059 NaN 0 485.35870361328125 PEAK HCD FTMS 0 0 0 2297 6111.8427734375 0.4993228832742355 1 -0.008218765258789062 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109088.3 NaN 911 1385 2297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2300 23.483 NaN 35473 35 0 5739.6 0.327 -1 TAVKNDYEM 9 21 543.742179236445 1085.46980553969 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2299 20095.685546875 0.04918977687815137 49 -0.5244102478027344 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 11.494710602746466 0.2610445893512368 2 E{M(Oxidation (M))|F} 2 -1 20.701 0 0 1.9071 0 0 791.3754139630875 0 791.3754139630875 0 5.243500300354141 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.9071 + + 3 NaN NaN 86675.8 NaN 912 1386 2299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2301 23.487 NaN 46591 35 0 6208.6 0.261 + 375 AIIIDPNEH 9 28 511.2690753346591 1020.5235977361182 2 511.2695617675781 MULTI HCD FTMS 0 0 0 2299 15507.642578125 0.7976983638364206 2 -0.023389816284179688 2 Unmodified _AIIIDPNEH_ REV__ENSG00000123064|ENST00000306014|DDX54;REV__ENST00000546869.1_1_12:113614643-113615134:-|nuORF;REV__nc|ENSG00000123064|Q8TDD1-2|DDX54 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100756.7 NaN 913 1386 2299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2302 23.491 NaN 33458 35 0 11279 0.261 + -1 AHCAYARKF 9 15 562.2777310590697 NaN 0 562.2779541015625 PEAK HCD FTMS 0 0 0 2299 6058.36376953125 0.5204103999460444 2 -0.023389816284179688 3 Carbamidomethyl (C) _AHC(Carbamidomethyl (C))AYARKF_ REV__ENST00000442031.1_1_X:51665090-51665543:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91177.8 NaN 914 1386 2299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2304 23.496 NaN 434480 35 0 69591 0.327 -1 0 60 434.9050492510361 1301.6933183533083 3 434.9049377441406 MULTI HCD FTMS 0 0 0 2303 143765.0625 0.48747128724075867 -6 0.06360816955566406 1 NaN NaN 2 DT{I|L} 3 -1 45.674 0 0 3.5088 0 0 0 969.5112044206844 969.5112044206844 7.715299873086607 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 DT{I|L} 3.5088 - 20 + NaN NaN 152056.2 NaN 915 1387 2303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2305 23.501 NaN 11032 35 0 4667.4 0.261 -1 WERLNCAAE 9 8 574.7612630502404 1147.5079731672806 2 574.7619018554688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _WERLNC(Carbamidomethyl (C))AAE_ ENSG00000174442|ENST00000307897|ZWILCH;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENST00000567926.5_1_15:66797640-66797730:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92586.5 NaN 916 1387 2303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2307 23.506 NaN 33863 35 0 9910.1 0.411 + 3644 ELGRLQAHE 9 20 526.7778756213738 1051.5411983095476 2 526.77783203125 MULTI HCD FTMS 0 0 0 2306 5615.390625 0.2751359612313116 -85 0.8610668182373047 1 Unmodified _ELGRLQAHE_ ADAM18|p.C437Lfs*6|1|0.31|ENSG00000168619|chr8:39663871-39663872|-/T|frameshift_variant;ENSG00000168619|ENST00000265707|ADAM18;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;nc|ENSG00000168619|Q9Y3Q7-3|ADAM18 1.4819007175156935 0.3397831423917744 2 S 1 9 5.4846 0 0 0.52157 0 0 267.1104254597413 694.3690279596311 961.4794534193725 0 0 0 0 0 0 0 0 0 S 0.52157 - 1 + NaN NaN 97445.5 NaN 917 1388 2306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2309 23.514 NaN 64831 35 0 7002 0.327 + 26038 SPEESSKAL 9 31 474.23760031540127 946.4606476976026 2 474.2375183105469 MULTI HCD FTMS 0 0 0 2308 26755.939453125 0.865216105059999 -4 0.03966331481933594 1 Unmodified _SPEESSKAL_ ENSG00000154059|ENST00000284202|IMPACT;nc|ENSG00000154059|Q9P2X3-2|IMPACT 10.799506525563784 0.2670509983294061 2 A{I|L} 2 7 19.464 0 0 2.0565 0 0 744.32817275215 0 744.32817275215 0 5.651668842475033 0 0 0 0 0 0 0 + A{I|L} 2.0565 + + 4 NaN NaN 92293 NaN 918 1389 2308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2310 23.519 NaN 11635 35 0 3097.1 0.261 + -1 LRGYDLDCH 9 13 574.7612630502404 1147.5079731672806 2 574.7600708007812 MULTI HCD FTMS 0 0 0 2308 6598.58154296875 0.08335592731987627 34 -0.3668632507324219 2 Carbamidomethyl (C) _LRGYDLDC(Carbamidomethyl (C))H_ REV__ENSG00000162068|ENST00000293973|NTN3 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85879.8 NaN 919 1389 2308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2312 23.524 NaN 381430 35 0 55648 0.327 -1 0 37 493.5585398410027 1477.6537901232082 3 493.5587158203125 MULTI HCD FTMS 0 0 0 2311 113335 0.8712433737330472 3 -0.04102516174316406 1 NaN NaN 2 NSSS 4 -1 35.662 0 0 2.4134 0 0 0 1099.491267909957 1099.491267909957 25.204262829037845 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 NSSS 2.4134 - 19 + NaN NaN 143403.9 NaN 920 1390 2311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2313 23.529 NaN 70873 35 0 6626.9 0.261 + 26459 STSAVKEKT 9 43 475.76122911394083 949.5079052946817 2 475.7613830566406 MULTI HCD FTMS 0 0 0 2311 19776.08984375 0.05002473234132568 34 -0.3701667785644531 2 Unmodified _STSAVKEKT_ ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.S1801L|1|0.16|ENSG00000131711|chr5:72198757-72198757|C/T|missense_variant 8.745405648335112 0.2847203663274469 2 {[MG]|[TS]}{[SA]|[TG]}V 5 4 10.33 0 0 1.0879 0 0 0 501.26670252017817 501.26670252017817 5.26802492411967 0 0 0 0 0.4247425010840047 0 0.5 0 + {[MG]|[TS]}{[SA]|[TG]}V 1.0879 + + 11 + NaN NaN 97943.3 NaN 921 1390 2311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2314 23.532 NaN 24205 35 0 5630.5 0.261 + 30295 VKKSLTNLR 9 12 529.83765829402 NaN 0 529.8368530273438 PEAK HCD FTMS 0 0 0 2311 5485.0732421875 0.7473214245917149 -17 0.15753936767578125 3 Unmodified _VKKSLTNLR_ REV__ENSG00000163075|ENST00000413369|CFAP221;REV__ENST00000413057.6_1_2:120317267-120388537:+|nuORF;REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93668.4 NaN 922 1390 2311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2315 23.536 NaN 32791 35 0 7025.3 0.261 -1 TREDPRQM 8 19 524.7454328916376 1047.4763128500751 2 524.7459716796875 MULTI HCD FTMS 0 0 0 2311 1766.718505859375 0.0017764659746623472 118 -1.2694873809814453 4 Oxidation (M) _TREDPRQM(Oxidation (M))_ ENST00000495272.5_1_1:95705378-95709907:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93828.7 NaN 923 1390 2311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2317 23.541 NaN 288680 35 0 25380 0.327 + 22387 QPQSHETAL 9 51 505.7485984741452 1009.4826440150904 2 505.7485656738281 MULTI HCD FTMS 0 0 0 2316 125128.984375 0.19257351202021553 -14 0.1418914794921875 1 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 3.944395688203298 0.32111559684428237 2 ATEA 4 7 19.469 0 0 1.9286 0 0 149.1094992014593 485.1927889459594 634.3022881474187 0 0 0 0 0 0 0 0.3807196863200844 0 ATEA 1.9286 - 31 + NaN NaN 130065.7 NaN 924 1391 2316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2318 23.546 NaN 116730 35 0 21487 0.262 + 3577 EKEHHRLSAP 10 43 401.8778842771242 NaN 0 401.8778381347656 PEAK HCD FTMS 0 0 0 2316 33916.86328125 0.33765354442779605 613 -8.620466232299805 2 Unmodified _EKEHHRLSAP_ ENST00000502488.1_1_4:106448057-106448150:-|nuORF 7.289230182591677 0.3339457182549222 2 K 1 9 2.4743 0 0 0.30861 0 0 418.52531703882033 252.09848962955314 670.6238066683735 0 0 0 0 0 0 0 0 0 + K 0.30861 + + 2 + NaN NaN 120464.8 NaN 925 1391 2316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2319 23.549 NaN 170360 35 0 26370 0.261 + 4066 ESGPSIVHR 9 42 491.2591052378132 980.5036575424264 2 491.2596130371094 MULTI HCD FTMS 0 0 0 2316 61020.1953125 0.02348227758988018 -17 0.16608047485351562 3 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 28.494509381512117 0.11816142465008336 2 ESGPS{I|L}VHR 9 0 + 73.849 0 0 7.5318 7.5318 96.367 0 0 0 50.31743128760553 16.478174818886373 16.478174818886373 73.84942536088872 0 0.3494850021680094 0 0 0 + + ESGPS{I|L}VHR 7.5318 + + 57 + NaN NaN 108611.4 NaN 926 1391 2316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2320 23.552 NaN 38026 35 0 10889 0.261 -1 PYRMSRRRRYE 11 25 529.2765753080922 NaN 0 529.2762451171875 PEAK HCD FTMS 0 0 0 2316 3685.947509765625 0.5875130849100731 1 -0.016782760620117188 4 Oxidation (M) _PYRM(Oxidation (M))SRRRRYE_ ENSG00000176473|ENST00000402312|WDR25;nc|ENSG00000176473|Q64LD2-2|WDR25 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102535.2 NaN 927 1391 2316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2322 23.558 NaN 26156 35 0 5469.7 0.327 + -1 WYRPWIWMKMR 11 15 562.2777310590697 NaN 0 562.2777099609375 PEAK HCD FTMS 0 0 0 2321 1336.4820556640625 0.1148031362208315 8 -0.081146240234375 1 2 Oxidation (M) _WYRPWIWM(Oxidation (M))KM(Oxidation (M))R_ REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF;REV__ENST00000559382.5_2_14:24584130-24586206:+|nuORF;REV__ENST00000560901.5_1_14:24584114-24586206:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92765.4 NaN 928 1392 2321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2324 23.565 NaN 21297 35 0 4263.3 0.411 -1 RYKMMCVK 8 20 545.7634574593958 1089.5123619855915 2 545.763427734375 MULTI HCD FTMS 0 0 0 2323 10098.8291015625 0.7147673412208495 -3 0.04102516174316406 1 2 Oxidation (M) _RYKM(Oxidation (M))M(Oxidation (M))CVK_ ENST00000377445.5_9:69238165-69262487:-|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94615.2 NaN 929 1393 2323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2326 23.573 NaN 29667 35 0 5036.7 0.327 + -1 QPQQPQQM 8 22 500.7294615782505 999.444370223301 2 500.7296142578125 MULTI HCD FTMS 0 0 0 2325 9437.0224609375 0.04288030185142232 131 -1.4169979095458984 1 Oxidation (M) _QPQQPQQM(Oxidation (M))_ REV__ENSG00000144893|ENST00000687756|MED12L;REV__nc|ENSG00000144893|Q86YW9-4|MED12L;REV__nc|ENSG00000144893|Q86YW9|MED12L 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.0496 0 0 834.3986834330651 0 834.3986834330651 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0496 + + 1 + NaN NaN 106044.5 NaN 930 1394 2325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2327 23.578 NaN 43869 35 0 9099 0.261 + 4145 ETITESAGR 9 25 482.2409013279966 962.4672497227932 2 482.24102783203125 MULTI HCD FTMS 0 0 0 2325 14310.1904296875 0.4676694011359154 -6 0.06705474853515625 2 Unmodified _ETITESAGR_ ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 5.296884461304476 0.3108627248283497 2 TE{[SA]|[TG]}{[NV]|[RG]} 6 3 9.6658 0 0 1.0043 0 0 343.1766746268932 0 343.1766746268932 0 9.665762445130499 0 0 0 0 0 0 0 + TE{[SA]|[TG]}{[NV]|[RG]} 1.0043 + + 8 + NaN NaN 92235 NaN 931 1394 2325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2330 23.591 NaN 48941 35 0 11450 0.327 -1 0 20 469.32880675924343 468.32153029264344 1 469.3283386230469 MULTI HCD FTMS 0 0 0 2329 14235.90625 0.7918907290955947 8 -0.10495758056640625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96175.9 NaN 932 1396 2329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2331 23.595 NaN 37644 35 0 9452.5 0.261 + -1 ALDMLSKKM 9 18 526.7778756213738 1051.5411983095476 2 526.7783203125 MULTI HCD FTMS 0 0 0 2329 5691.4697265625 0.27886359090765545 -78 0.8037738800048828 2 Oxidation (M) _ALDM(Oxidation (M))LSKKM_ REV__ENSG00000140521|ENST00000268124|POLG 1.844237919475145 0.33703635659052655 2 M 1 -1 14.604 0 0 1.3888 0 0 902.4877600544679 0 902.4877600544679 0 7.614393726401687 0 0 0 0 0 0 0 M 1.3888 + + 3 + NaN NaN 91314.6 NaN 933 1396 2329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2332 23.599 NaN 33380 35 0 11897 0.261 -1 SVWMKRMR 8 22 555.2883176870141 1108.5620824408281 2 555.2885131835938 MULTI HCD FTMS 0 0 0 2329 2013.7645263671875 0.10943592964410759 11 -0.1395587921142578 3 Oxidation (M) _SVWM(Oxidation (M))KRMR_ ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK;nc|ENSG00000115687|Q96RG2-4|PASK;PASK|p.E1199Dfs*8|1|0.04|ENSG00000115687|chr2:241108237-241108238|-/CATA|frameshift_variant;PASK|p.R224H|1|0.6|ENSG00000115687|chr2:241138724-241138724|C/T|missense_variant 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105196.4 NaN 934 1396 2329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2334 23.604 NaN 35580 35 0 6164.6 0.411 -1 TAVKNDYEM 9 26 543.742179236445 1085.46980553969 2 543.7421875 MULTI HCD FTMS 0 0 0 2333 13432.3583984375 0.03287943131003319 60 -0.631988525390625 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 11.494710602746466 0.2610445893512368 2 E{M(Oxidation (M))|F} 2 -1 20.701 0 0 1.9071 0 0 791.383104392775 0 791.383104392775 0 10.24350030035414 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.9071 + + 6 NaN NaN 117291.9 NaN 935 1397 2333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2336 23.612 NaN 35670 35 0 5818.1 0.327 + 32817 WTSTSPWE 8 24 497.2188796287996 NaN 0 497.21917724609375 PEAK HCD FTMS 0 0 0 2335 1519.0098876953125 0.2080746528719509 7 -0.09358406066894531 1 Unmodified _WTSTSPWE_ ENST00000367033.3_1_1:208383731-208390522:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100432.6 NaN 936 1398 2335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2337 23.617 NaN 34211 35 0 9085.6 0.261 + -1 KLALQCSLMS 10 22 555.2883176870141 1108.5620824408281 2 555.7472534179688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _KLALQCSLM(Oxidation (M))S_ REV__ENSG00000067798|ENST00000397909|NAV3;REV__NAV3|p.P444Lfs*48|1|0.35|ENSG00000067798|chr12:78006868-78006868|C/-|frameshift_variant;REV__nc|ENSG00000067798|Q8IVL0-2|NAV3;REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87445 NaN 937 1398 2335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2339 23.622 NaN 522770 35 0 98178 0.327 -1 0 54 434.9050492510361 1301.6933183533083 3 434.9049072265625 MULTI HCD FTMS 0 0 0 2338 204154.25 0.6922358834099325 6 -0.08361625671386719 1 NaN NaN 2 DT{I|L} 3 -1 50.445 0 0 3.8754 0 0 0 969.5118462692569 969.5118462692569 12.486512420283233 0 0 0 0 0.4247425010840047 2 0 0 DT{I|L} 3.8754 - 39 + NaN NaN 158154.5 NaN 938 1399 2338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2340 23.627 NaN 73945 35 0 8456.7 0.261 + -1 MHCVKYRDL 9 32 407.8667001713682 1220.5782711143047 3 407.8668518066406 MULTI HCD FTMS 0 0 0 2338 34442.69140625 0.9510994351001599 1 -0.016590118408203125 2 Carbamidomethyl (C) _MHC(Carbamidomethyl (C))VKYRDL_ REV__ENST00000372621.8_1_1:41477634-41477730:+|nuORF 2.498486711656943 0.33207666356665205 2 E 1 -1 4.6041 0 0 0.37721 0 0 655.3315192605922 433.18427454166255 1088.5157938022548 0 0 0 0 0 0 0 0 0 E 0.37721 - 2 + NaN NaN 98369.4 NaN 939 1399 2338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2341 23.63 NaN 20080 35 0 6249 0.261 + 21683 QAAFEQSQET 10 15 569.7541591805483 1137.4937654278965 2 569.754638671875 MULTI HCD FTMS 0 0 0 2338 13650.07421875 0.7673902636132852 -6 0.05690193176269531 3 Unmodified _QAAFEQSQET_ REV__ENSG00000039139|ENST00000265104|DNAH5 1.1933415558491238 0.46898715808974617 2 K 1 -1 5.4846 0 0 0.48216 0 0 568.6752972655903 437.70969568424067 1006.384992949831 0 0 0 0 0 0 0 0 0 K 0.48216 - 1 + NaN NaN 88807.9 NaN 940 1399 2338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2342 23.634 NaN 13084 35 0 4872.2 0.261 -1 WERLNCAAE 9 12 574.7612630502404 1147.5079731672806 2 574.761962890625 MULTI HCD FTMS 0 0 0 2338 5154.0791015625 0.06510839340138645 43 -0.46644020080566406 4 Carbamidomethyl (C) _WERLNC(Carbamidomethyl (C))AAE_ ENSG00000174442|ENST00000307897|ZWILCH;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENST00000567926.5_1_15:66797640-66797730:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95620.2 NaN 941 1399 2338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2344 23.639 NaN 84726 35 0 17780 0.327 + 18523 MSVVEGGLRA 10 35 509.77284640627516 NaN 0 509.7583923339844 PEAK HCD FTMS 0 0 0 2343 1701.153076171875 0.9437215817208536 1 -0.016763687133789062 1 Unmodified _MSVVEGGLRA_ ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF 2.9952420565917617 0.3376207769591857 2 {I|L} 1 9 6.9897 0 0 0.68693 0 0 659.2989143928254 242.1251619928344 901.4240763856598 0 0 0 0 0 0 0 0 0 + {I|L} 0.68693 + + 2 + NaN NaN 94298.3 NaN 942 1400 2343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2345 23.643 NaN 49554 35 0 15312 0.261 -1 TWPRRWKMW 9 22 454.9006393967861 NaN 0 454.9008483886719 PEAK HCD FTMS 0 0 0 2343 29606.173828125 0.3490998514184613 512 -6.745182037353516 2 Oxidation (M) _TWPRRWKM(Oxidation (M))W_ ENST00000420660.5_1_2:219134176-219134257:-|nuORF 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96151 NaN 943 1400 2343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2346 23.647 NaN 39855 35 0 4744.5 0.261 -1 0 25 474.23760031540127 946.4606476976026 2 474.2375793457031 MULTI HCD FTMS 0 0 0 2343 13863.4130859375 0.4483060030116681 7 -0.09157562255859375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87860.4 NaN 944 1400 2343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2347 23.65 NaN 51011 35 0 11317 0.261 + 12466 KQQVWIKEQK 10 34 438.9231619577136 NaN 0 438.9231872558594 PEAK HCD FTMS 0 0 0 2343 12731.6640625 0.725440852018062 -9 0.09792900085449219 4 Unmodified _KQQVWIKEQK_ REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82108.9 NaN 945 1400 2343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2349 23.656 NaN 130750 35 0 21943 0.327 + 4123 ETGGVGDVSR 10 44 488.7386429424338 975.4627329516676 2 488.7386474609375 MULTI HCD FTMS 0 0 0 2348 33504.25390625 0.9452312657261399 4 -0.050262451171875 1 Unmodified _ETGGVGDVSR_ ENST00000376901.8_1_11:66056515-66056632:-|nuORF 12.872603262515298 0.3907060291096084 2 {[ET]|[MV]}NV[DG]V{[QD]|[EN]|[WG]|[KD]|[RS]} 9 2 + 23.011 0 0 2.3589 2.3589 80.04 0 0 0 15.563317301734669 3.925449767853312 3.925449767853312 0.4575749056067515 0 0.28872548999643577 0 0 0 {[ET]|[MV]}NV[DG]V{[QD]|[EN]|[WG]|[KD]|[RS]};{[ET]|[MV]}NV[RD]{[QD]|[EN]|[WG]|[KD]|[RS]};{[ET]|[MV]}GGV[DG]V{[QD]|[EN]|[WG]|[KD]|[RS]};{[ET]|[MV]}N[RD]V{[QD]|[EN]|[WG]|[KD]|[RS]};{[ET]|[MV]}GGV[RD]{[QD]|[EN]|[WG]|[KD]|[RS]};{[ET]|[MV]}GG[RD]V{[QD]|[EN]|[WG]|[KD]|[RS]} 2.3589;2.312;1.415;1.3988;1.3625;0.44933 -;-;+;-;-;- + 26 + NaN NaN 106776.4 NaN 946 1401 2348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2350 23.66 NaN 32752 35 0 4284.3 0.261 + 16616 LVTSRHKN 8 26 477.77762341383664 953.5406938944733 2 477.77740478515625 MULTI HCD FTMS 0 0 0 2348 1873.044189453125 0.12918591071381785 -7 0.08224868774414062 2 Unmodified _LVTSRHKN_ REV__ENSG00000170396|ENST00000302277|ZNF804A;REV__ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant;REV__ZNF804A|p.R599Efs*46|1|0.15|ENSG00000170396|chr2:184937185-184937185|A/-|frameshift_variant 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101642.1 NaN 947 1401 2348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2351 23.664 NaN 38555 35 0 6567.2 0.261 + -1 MIDRTTCL 8 25 513.2412250935475 NaN 0 513.35302734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))IDRTTC(Carbamidomethyl (C))L_ REV__nc|ENSG00000112200|Q9Y4E5-4|ZNF451 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87888.4 NaN 948 1401 2348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2353 23.669 NaN 1015800 35 0 123480 0.327 + 22388 QPQSHETAL 9 66 505.7485984741452 1009.4826440150904 2 505.74859619140625 MULTI HCD FTMS 0 0 0 2352 594512.5 0.9149547615747472 -3 0.04679298400878906 1 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 47.748688679222035 0.03472022231463587 2 Q{M(Oxidation (M))|F}TA{I|L} 5 5 25.718 0 0 2.5477 0 0 431.18211562324376 0 431.18211562324376 0 4.744237387763093 0 0 0 0.7429928190999391 0 0.4247425010840047 0.5 Q{M(Oxidation (M))|F}TA{I|L} 2.5477 - 349 NaN NaN 254603 NaN 949 1402 2352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2354 23.674 NaN 43405 35 0 9354 0.261 + -1 YHYMCFPS 8 25 532.2043417851934 1062.3941306371867 2 532.204833984375 MULTI HCD FTMS 0 0 0 2352 19765.140625 1 0 0 2 Oxidation (M) _YHYM(Oxidation (M))CFPS_ REV__ENSG00000163898|ENST00000296252|LIPH 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103238.1 NaN 950 1402 2352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2356 23.679 NaN 2816800 35 0 448190 0.327 + 4067 ESGPSIVHR 9 95 491.2591052378132 980.5036575424264 2 491.25946044921875 MULTI HCD FTMS 0 0 0 2355 1779866.375 0.6849423551760083 -5 0.06689834594726562 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 155.02607137521346 3.513045939247001E-06 2 ESGPS{I|L}VHR 9 0 + 113.98 0 0 11.624 11.624 99.876 0 0 0 73.1132484405492 27.974673466932515 27.974673466932515 90.42968749687401 0 1.2619229975844686 0.8538719643217619 1.3979400086720375 1.149649864804614 + + ESGPS{I|L}VHR;[RH][YN]VHR;[RH]V[YN]HR;[HV]R[YN]HR;[RH]V{[TV]|[{I|L}S]}PGSE;[RH]V[TP]VGSE 11.624;2.4017;1.7337;0.80818;0.80022;0.44103 +;-;-;-;-;- + 1067 + NaN NaN 528954.4 NaN 951 1403 2355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2357 23.684 NaN 68204 35 0 8000.5 0.261 -1 0 32 493.5585398410027 1477.6537901232082 3 493.8921813964844 MULTI HCD FTMS 0 0 0 2355 10895.451171875 0.10208793373460374 13 -0.13936233520507812 2 NaN NaN 2 S 1 -1 5.4846 0 0 0.37117 0 0 839.3627877812145 548.2355440729124 1387.5983318541269 0 0 0 0 0 0 0 0 0 S 0.37117 - 2 + NaN NaN 97887.9 NaN 952 1403 2355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2358 23.687 NaN 20225 35 0 5358.4 0.261 -1 CILMRNHDV 9 15 558.7673929973812 1115.5202330615623 2 558.7672729492188 MULTI HCD FTMS 0 0 0 2355 10345.2783203125 0.8118152709535145 -1 0.010137557983398438 3 Oxidation (M) _CILM(Oxidation (M))RNHDV_ ENSG00000006756|ENST00000381154|ARSD;nc|ENSG00000006756|P51689-2|ARSD;nc|ENSG00000006756|P51689-3|ARSD 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88167.4 NaN 953 1403 2355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2359 23.69 NaN 74034 35 0 13880 0.264 -1 0 36 400.3503723144531 NaN 0 400.3503723144531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92621.3 NaN 954 1403 2355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2361 23.696 NaN 19429 35 0 3481.9 0.327 + 21879 QCQGAVEEKV 10 13 545.7634574593958 1089.5123619855915 2 545.7626953125 MULTI HCD FTMS 0 0 0 2360 8566.0751953125 0.606283236450062 8 -0.07518768310546875 1 Unmodified _QCQGAVEEKV_ REV__nc|ENSG00000166473|Q7Z442-3|PKD1L2;REV__nc|ENSG00000166473|Q7Z442|PKD1L2 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109245.9 NaN 955 1404 2360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2362 23.7 NaN 52702 35 0 9587.4 0.261 + 28753 TTEEIDATL 9 27 496.74294983222165 991.4713467312433 2 497.218994140625 MULTI HCD FTMS 0 0 0 2360 4117.32080078125 0.5012990430206713 -3 0.040210723876953125 2 Unmodified _TTEEIDATL_ REV__tr|U7SQU0|U7SQU0_FUSNURibbon-helix-helixproteinCopGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01687PE=4SV=1 1.844237919475145 0.33703635659052655 2 G 1 -1 1.1092 0 0 0.11188 0 0 494.7242286665933 436.69223962955317 931.4164682961465 0 0 0 0 0 0 0 0 0 G 0.11188 - 1 + NaN NaN 112732.5 NaN 956 1404 2360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2364 23.706 NaN 89912 35 0 12009 0.327 + 4146 ETITESAGR 9 40 482.2409013279966 962.4672497227932 2 482.2402648925781 MULTI HCD FTMS 0 0 0 2363 16301.3525390625 0.5327423011669367 5 -0.04776573181152344 1 Unmodified _ETITESAGR_ ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 8.155526934196011 0.2891920862272901 2 VHR 3 8 21.427 0 0 2.2262 0 0 552.228788314587 0 552.228788314587 0 12.38560627359831 0 0 0 0 0 0 0 VHR 2.2262 - 72 + NaN NaN 102377 NaN 957 1405 2363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2365 23.71 NaN 62856 35 0 13411 0.261 -1 KVFTYFMV 8 24 525.7694413850139 1049.5243298368277 2 526.272216796875 MULTI HCD FTMS 0 0 0 2363 12809.888671875 0.7040511374139267 1 -0.016407012939453125 2 Oxidation (M) _KVFTYFM(Oxidation (M))V_ ENSG00000189433|ENST00000339480|GJB4 2.0597508629832335 0.5389364538378849 2 V 1 -1 4.6041 0 0 0.43868 0 0 574.2496543991309 373.17267786197505 947.422332261106 0 0 0 0 0 0 0 0 0 V 0.43868 + + 6 + NaN NaN 101631.4 NaN 958 1405 2363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2366 23.714 NaN 33798 35 0 5178.9 0.261 + -1 VCVWVCVSC 9 23 556.2413572173932 NaN 0 556.2408447265625 PEAK HCD FTMS 0 0 0 2363 2361.326171875 0.2519181163343821 -13 0.14817237854003906 3 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VWVC(Carbamidomethyl (C))VSC_ REV__ENST00000469110.1_1_10:49633920-49634247:+|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89278.6 NaN 959 1405 2363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2367 23.717 NaN 39134 35 0 9422 0.261 + 3359 EEPTENPPI 9 27 513.2412250935475 NaN 0 513.2411499023438 PEAK HCD FTMS 0 0 0 2363 6319.763671875 0.9919363683162541 -1 0.010051727294921875 4 Unmodified _EEPTENPPI_ REV__ENSG00000170881|ENST00000303545|RNF139 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95091.6 NaN 960 1405 2363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2369 23.722 NaN 57649 35 0 10107 0.411 + 12138 KKKKKKKKKSF 11 37 469.3284840754275 NaN 0 469.32861328125 PEAK HCD FTMS 0 0 0 2368 9913.9931640625 0.5465272825721933 -12 0.14891815185546875 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113111.9 NaN 961 1406 2368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2371 23.73 NaN 117460 35 0 8908.3 0.411 + 4147 ETITESAGR 9 62 482.2409013279966 962.4672497227932 2 482.2544250488281 MULTI HCD FTMS 0 0 0 2370 16301.24609375 0.5327388224420521 7 -0.06718826293945312 1 Unmodified _ETITESAGR_ ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 11.494710602746466 0.2610445893512368 2 HVYSAGR 7 5 34.667 0 0 3.6019 0 0 174.08958921170193 0 174.08958921170193 0 22.984649173634146 0 0 0 0 0 0.7614393726401688 0 HVYSAGR 3.6019 - 240 + NaN NaN 134859.8 NaN 962 1407 2370 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2373 23.738 NaN 35187 35 0 3907.2 0.411 -1 TAVKNDYEM 9 34 543.742179236445 1085.46980553969 2 543.7421264648438 MULTI HCD FTMS 0 0 0 2372 11325.1552734375 0.027721465869445773 71 -0.7250041961669922 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 23.789781309258295 0.1548179064208189 2 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 -1 + 29.103 0 0 2.6811 2.6811 88.25 0 0 0 12.364167856113117 5.39136227485692 5.39136227485692 29.102737437457623 0 0.8182503180159344 0 0.3807196863200844 0 [TA]VK[DN]YE{M(Oxidation (M))|F} 2.6811 + + 11 + NaN NaN 88493.6 NaN 963 1408 2372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2376 23.754 NaN 47919 35 0 17127 0.327 + 7974 GELAQRLHE 9 17 526.7778756213738 1051.5411983095476 2 526.7770385742188 MULTI HCD FTMS 0 0 0 2375 7880.08984375 0.3860988911611563 -64 0.6606616973876953 1 Unmodified _GELAQRLHE_ REV__ENSG00000157933|ENST00000378536|SKI 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101328.3 NaN 964 1410 2375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2377 23.758 NaN 15221 35 0 4634.3 0.261 + 34952 YSNDNTPLASG 11 11 569.7541591805483 1137.4937654278965 2 569.7540893554688 MULTI HCD FTMS 0 0 0 2375 14097.5146484375 0.7925448103056016 5 -0.057220458984375 2 Unmodified _YSNDNTPLASG_ REV__ENSG00000204539|ENST00000376288|CDSN 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89640.9 NaN 965 1410 2375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2380 23.771 NaN 66405 35 0 8165.8 0.327 + 4041 ESASAGATLR 10 36 481.7503281000437 961.4861032668874 2 481.74847412109375 MULTI HCD FTMS 0 0 0 2379 17725.517578125 0.544980800844734 1 -0.016462326049804688 1 Unmodified _ESASAGATLR_ ENSG00000120149|ENST00000239243|MSX2 7.101721422024254 0.4377131641736035 2 AQT{I|L}R 5 6 23.901 0 0 2.4858 0 0 374.1471883272374 0 374.1471883272374 0 16.91122510072759 0 0 0 0 0 0 0 AQT{I|L}R 2.4858 - 64 + NaN NaN 109635.8 NaN 966 1412 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2381 23.775 NaN 101920 35 0 16048 0.261 + 30129 VGEPKTDNR 9 34 508.26185211326623 1014.5091512933325 2 508.7808532714844 MULTI HCD FTMS 0 0 0 2379 9086.2060546875 0.9599318699619639 1 -0.016462326049804688 2 Unmodified _VGEPKTDNR_ REV__ENST00000513024.5_1_4:41607927-41607993:+|nuORF 2.0597508629832335 0.3354026079994024 2 KD 2 -1 9.464 0 0 0.93286 0 0 130.05820901558633 638.3018282525999 768.3600372681863 0 0 0 0 0 0 0 0 0 KD 0.93286 - 10 + NaN NaN 97691.6 NaN 967 1412 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2382 23.779 NaN 59679 35 0 17773 0.261 + 33025 YCFEILYKQR 10 27 454.9006393967861 NaN 0 454.9006652832031 PEAK HCD FTMS 0 0 0 2379 22747.521484375 0.2682263644209811 524 -6.975767135620117 3 Unmodified _YCFEILYKQR_ REV__ENSG00000066185|ENST00000372565|ZMYND12;REV__ZMYND12|p.L153Sfs*30|1|0.23|ENSG00000066185|chr1:42439990-42439993|ATAG/-|frameshift_variant 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96232.9 NaN 968 1412 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2383 23.782 NaN 10464 35 0 3130.7 0.261 -1 WERLNCAAE 9 10 574.7612630502404 1147.5079731672806 2 574.7615966796875 MULTI HCD FTMS 0 0 0 2379 3551.5537109375 0.044864650239413606 55 -0.5738296508789062 4 Carbamidomethyl (C) _WERLNC(Carbamidomethyl (C))AAE_ ENSG00000174442|ENST00000307897|ZWILCH;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENST00000567926.5_1_15:66797640-66797730:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87863.8 NaN 969 1412 2379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2385 23.788 NaN 29192 35 0 5569.4 0.327 -1 YQLFSKTK 8 19 528.7894700570066 NaN 0 529.2337646484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YQLFSKTK_ ENSG00000139144|ENST00000538779|PIK3C2G;nc|ENSG00000139144|O75747-2|PIK3C2G;PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;PIK3C2G|p.I290V|1|0.23|ENSG00000139144|chr12:18290961-18290961|A/G|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97210.4 NaN 970 1413 2384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2386 23.792 NaN 33231 35 0 8352.1 0.261 + -1 LNRMMHHA 8 14 513.2412250935475 NaN 0 513.2410278320312 PEAK HCD FTMS 0 0 0 2384 4084.32177734375 0.6410662678548149 6 -0.05705451965332031 2 Oxidation (M) _LNRM(Oxidation (M))MHHA_ REV__ENSG00000125107|ENST00000317147|CNOT1;REV__nc|ENSG00000125107|A5YKK6-2|CNOT1;REV__nc|ENSG00000125107|A5YKK6-3|CNOT1;REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94197.5 NaN 971 1413 2384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2388 23.798 NaN 2346100 35 0 372330 0.327 + 4068 ESGPSIVHR 9 85 491.2591052378132 980.5036575424264 2 491.2594909667969 MULTI HCD FTMS 0 0 0 2387 1490001.25 0.5733941489794122 6 -0.05686187744140625 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 155.02607137521346 3.513045939247001E-06 2 ESGPS{I|L}VHR 9 0 + 106.93 0 0 10.906 10.906 99.756 0 0 0 64.30774338783203 30.226211886592736 30.226211886592736 82.51767402328846 0 1.2544321917401078 0 1.329689690656103 1.374803706770636 + + ESGPS{I|L}VHR;[RH][YN]VHR;[RH]V[YN]HR;[RH]V{[TV]|[{I|L}S]}PGSE;[RH]V[TP]VGSE 10.906;2.4901;1.7539;0.54198;0.41455 +;-;-;-;- + 775 + NaN NaN 438041.8 NaN 972 1414 2387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2389 23.802 NaN 623080 35 0 72526 0.261 + 22389 QPQSHETAL 9 68 505.7485984741452 1009.4826440150904 2 505.74853515625 MULTI HCD FTMS 0 0 0 2387 317237.75 0.4882289100965232 9 -0.08361434936523438 2 Unmodified _QPQSHETAL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 36.12702656103203 0.08312389501731911 2 ATEQSYY 7 8 28.535 0 0 2.8267 0 0 149.10855241464043 0 149.10855241464043 0 4.053811751880417 0 0 0 0 0 0.3807196863200844 0.7059771852360797 ATEQSYY 2.8267 - 297 + NaN NaN 208219.5 NaN 973 1414 2387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2390 23.806 NaN 37683 35 0 11612 0.261 + -1 EGAEALKLCD 10 22 553.2611694335938 NaN 0 553.2611694335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _EGAEALKLC(Carbamidomethyl (C))D_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118447.7 NaN 974 1414 2387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2393 23.819 NaN 20627 35 0 4678 0.411 -1 RYKMMCVK 8 24 545.7634574593958 1089.5123619855915 2 545.7630004882812 MULTI HCD FTMS 0 0 0 2392 8848.431640625 0.6262676488668798 20 -0.19890975952148438 1 2 Oxidation (M) _RYKM(Oxidation (M))M(Oxidation (M))CVK_ ENST00000377445.5_9:69238165-69262487:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90556.4 NaN 975 1416 2392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2395 23.827 NaN 82434 35 0 16173 0.411 + 33612 YISKHFYFV 9 30 401.8778842771242 NaN 0 401.8780212402344 PEAK HCD FTMS 0 0 0 2394 27910.19140625 0.2778551476247012 639 -9.395166397094727 1 Unmodified _YISKHFYFV_ REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106244.3 NaN 976 1417 2394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2397 23.835 NaN 30206 35 0 3752.3 0.327 + 8195 GQPHDHKH 8 20 478.22766026314076 954.4407675930815 2 478.2272033691406 MULTI HCD FTMS 0 0 0 2396 19541.115234375 0.971616983836571 -6 0.06355667114257812 1 Unmodified _GQPHDHKH_ ENSG00000171988|ENST00000399262|JMJD1C;ENST00000483298.1_1_10:64953077-64954292:-|nuORF;nc|ENSG00000171988|Q15652-3|JMJD1C 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88805.6 NaN 977 1418 2396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2398 23.839 NaN 37352 35 0 10953 0.261 -1 YFQYKDTM 8 22 556.2413572173932 NaN 0 556.2410888671875 PEAK HCD FTMS 0 0 0 2396 9373.3876953125 1 0 0 2 Oxidation (M) _YFQYKDTM(Oxidation (M))_ tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1 0.7936320650641473 0.38822285293237185 2 N 1 -1 1.5938 0 0 0.14352 0 0 554.5870102338114 438.8217867486938 993.4087969825052 0 0 0 0 0 0 0 0 0 N 0.14352 - 1 + NaN NaN 91278 NaN 978 1418 2396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2400 23.845 NaN 39000 35 0 6485.2 0.327 + 5412 FHDENEKL 8 25 516.2447090113135 NaN 0 516.2537841796875 PEAK HCD FTMS 0 0 0 2399 2064.096435546875 0.7777160027357226 -1 0.009960174560546875 1 Unmodified _FHDENEKL_ REV__ENSG00000100376|ENST00000441876|FAM118A;REV__nc|ENSG00000100376|Q9NWS6-2|FAM118A 4.3292370932331545 0.38822285293237185 2 R 1 -1 5.4846 0 0 0.53224 0 0 724.4360600130582 146.92180811099846 871.3578681240566 0 0 0 0 0 0 0 0 0 R 0.53224 - 1 + NaN NaN 90524.7 NaN 979 1419 2399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2401 23.849 NaN 59250 35 0 10408 0.261 + 7176 FSKKKKKKKKK 11 21 469.3284840754275 NaN 0 469.3285217285156 PEAK HCD FTMS 0 0 0 2399 13537.76953125 0.7462946838437072 1 -0.009946823120117188 2 Unmodified _FSKKKKKKKKK_ REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0.08335046087909445 0.3418837022149213 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93038.1 NaN 980 1419 2399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2403 23.855 NaN 30684 35 0 5725.5 0.412 + 21974 QEQLHSVPL 9 21 525.7806871669387 NaN 0 525.7655639648438 PEAK HCD FTMS 0 0 0 2402 2863.82763671875 0.5768610152154456 1 -0.01071929931640625 1 Unmodified _QEQLHSVPL_ EGFLAM|p.R92L|1|0.34|ENSG00000164318|chr5:38338765-38338765|G/T|missense_variant;ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM 2.9952420565917617 0.2807323172627736 2 V 1 8 5.4846 0 0 0.52256 0 0 228.13399288680858 719.3194063775999 947.4533992644085 0 0 0 0 0 0 0 0 0 + V 0.52256 + + 1 + NaN NaN 101563.2 NaN 981 1420 2402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2405 23.865 NaN 30218 35 0 5182.4 0.411 + -1 SSRFICILP 9 28 546.796485089989 NaN 0 546.7942504882812 PEAK HCD FTMS 0 0 0 2404 1495.7740478515625 0.1704235881276603 -3 0.030626296997070312 1 Carbamidomethyl (C) _SSRFIC(Carbamidomethyl (C))ILP_ REV__ENST00000553142.5_1_12:58020024-58020282:-|nuORF 4.3292370932331545 0.2742679634796037 2 Q 1 -1 11.237 0 0 1.0294 0 0 202.10394322509666 758.3881479639091 960.4920911890058 0 0 0 0 0 0.4247425010840047 0 0 0 Q 1.0294 - 1 + NaN NaN 95439.8 NaN 982 1421 2404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2407 23.873 NaN 30085 35 0 5179.8 0.411 -1 TAVKNDYEM 9 29 543.742179236445 1085.46980553969 2 543.741943359375 MULTI HCD FTMS 0 0 0 2406 14997.302734375 0.036710067619102185 85 -0.9106521606445312 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 10.150570793230772 0.27265765907388223 2 YE{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.5968 0 0 628.3195057599625 0 628.3195057599625 0 17.730012720637376 0 0 0 0.5 0 0 0 YE{M(Oxidation (M))|F} 2.5968 + + 5 NaN NaN 94409 NaN 983 1422 2406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2409 23.881 NaN 50124 35 0 17147 0.327 + -1 WLLYPTML 8 18 526.7778756213738 1051.5411983095476 2 526.7781372070312 MULTI HCD FTMS 0 0 0 2408 19289.390625 0.9451176927118272 -51 0.5245552062988281 1 Oxidation (M) _WLLYPTM(Oxidation (M))L_ REV__ENST00000399640.3_1_8:134488611-134488734:-|nuORF 0.6903765706972694 0.5409681170271811 2 V 1 -1 4.6041 0 0 0.43784 0 0 507.7454352253663 441.70993982486567 949.455375050232 0 0 0 0 0 0 0 0 0 V 0.43784 - 1 + NaN NaN 101563.9 NaN 984 1423 2408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2410 23.886 NaN 69415 35 0 9473.9 0.261 + 2344 DPAGVHPPR 9 32 473.2487248402364 944.4828967472728 2 473.2486572265625 MULTI HCD FTMS 0 0 0 2408 15495.12109375 0.7042955492722681 -12 0.11774444580078125 2 Unmodified _DPAGVHPPR_ ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 10.073929032068715 0.27331982688540024 2 D[PA]RH 5 5 20.229 0 0 2.1418 0 0 0 365.19379602603755 365.19379602603755 20.228787452803374 0 0 0 0 0.5 0 0 0 D[PA]RH 2.1418 - 7 + NaN NaN 96063.3 NaN 985 1423 2408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2411 23.889 NaN 31375 35 0 11324 0.261 + -1 CKKLLPFY 8 17 555.8041983554195 1109.593843777639 2 555.8038940429688 MULTI HCD FTMS 0 0 0 2408 5111.23583984375 0.3059225250368265 -11 0.11021614074707031 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))KKLLPFY_ REV__ENSG00000172009|ENST00000307741|THOP1;REV__THOP1|p.Y221C|1|0.15|ENSG00000172009|chr19:2805088-2805088|A/G|missense_variant 0.7936320650641473 0.540814922690045 2 Y 1 -1 13.495 0 0 1.2162 0 0 928.5171053516609 0 928.5171053516609 0 13.494850021680094 0 0 0 0 0 0 0 Y 1.2162 + + 1 + NaN NaN 91261.4 NaN 986 1423 2408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2413 23.895 NaN 26556 35 0 4375.5 0.327 + 32604 WLDRLSNG 8 20 480.75054222587795 NaN 0 480.7406921386719 PEAK HCD FTMS 0 0 0 2412 1554.2315673828125 0.26543039522538764 2 -0.018161773681640625 1 Unmodified _WLDRLSNG_ ENSG00000186862|ENST00000619208|PDZD7;ENST00000474125.6_1_10:102771704-102781716:-|nuORF;nc|ENSG00000186862|Q9H5P4-1|PDZD7;nc|ENSG00000186862|Q9H5P4-2|PDZD7 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94156.5 NaN 987 1424 2412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2414 23.899 NaN 39139 35 0 11691 0.261 + 18456 MPVQLPLAHS 10 21 546.796485089989 NaN 0 546.7943725585938 PEAK HCD FTMS 0 0 0 2412 8776.8017578125 1 0 0 2 Unmodified _MPVQLPLAHS_ ENSG00000168495|ENST00000306433|POLR3D;ENST00000398689.2_1_10:76415232-76415652:+|nuORF;ENST00000518039.1_1_8:22106011-22107622:+|nuORF 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90675.1 NaN 988 1424 2412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2416 23.905 NaN 90877 35 0 13008 0.411 -1 IQMRPDLK 8 51 508.7810132595862 1015.5474735859724 2 508.78106689453125 MULTI HCD FTMS 0 0 0 2415 26340.583984375 0.5035004355757451 9 -0.08945274353027344 1 Oxidation (M) _IQM(Oxidation (M))RPDLK_ ENSG00000120251|ENST00000264426|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000120251|P42262-4|GRIA2 6.723162845929126 0.5320176132289695 2 D 1 -1 8.7371 0 0 0.86034 0 0 259.1869843746884 638.3079928033811 897.4949771780696 0 0 0 0 0 0.3252574989159953 0 0 0 D 0.86034 + + 10 + NaN NaN 110473 NaN 989 1425 2415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2419 23.92 NaN 665170 35 0 105820 0.327 + 4069 ESGPSIVHR 9 67 491.2591052378132 980.5036575424264 2 491.25921630859375 MULTI HCD FTMS 0 0 0 2418 356384.625 0.1371467700186305 19 -0.20389366149902344 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 61.60191391372663 0.015340508911304802 2 ESGPS{I|L}VHR 9 0 + 80.003 0 0 8.1594 8.1594 97.352 0 0 0 43.85151878060192 20.285371682087217 20.285371682087217 70.87373072534398 0 0.8851518780601922 0 0 0.3807196863200844 + + ESGPS{I|L}VHR;[RH][YN]VHR 8.1594;0.93108 +;- + 289 + NaN NaN 184376.7 NaN 990 1427 2418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2420 23.925 NaN 365100 35 0 41460 0.261 -1 RYMPPAHRNF 10 54 435.5487008386898 1303.6242731162695 3 435.54852294921875 MULTI HCD FTMS 0 0 0 2418 134318.421875 0.5468184027194684 -8 0.07569694519042969 2 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 32.89776655970281 0.20703914202719614 2 APP[WD]{M(Oxidation (M))|F} 6 -1 37.708 0 0 2.8926 0 0 572.2814473377435 0 572.2814473377435 0 14.436974992327123 0 0 0 1.2302046884880937 0 0 0 APP[WD]{M(Oxidation (M))|F} 2.8926 - 36 NaN NaN 137315.1 NaN 991 1427 2418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2421 23.928 NaN 275200 35 0 23517 0.261 + 121 AEAHSQSPLA 10 47 505.7485984741452 1009.4826440150904 2 505.7486572265625 MULTI HCD FTMS 0 0 0 2418 117044.671875 0.1801317547553418 22 -0.23130035400390625 3 Unmodified _AEAHSQSPLA_ REV__ENST00000525829.1_1_8:12219536-12219971:+|nuORF 3.944395688203298 0.4544253912184634 2 ATE 3 -1 18.232 0 0 1.8061 0 0 149.09819684887788 556.2294405572874 705.3276374061652 0 0 0 0 0 0 0 0.805462187404089 0 ATE 1.8061 - 23 + NaN NaN 120726.5 NaN 992 1427 2418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2422 23.931 NaN 47744 35 0 9843.9 0.261 + 25749 SLAAKTGQH 9 22 456.74848915655457 911.4824253799092 2 456.7483825683594 MULTI HCD FTMS 0 0 0 2418 17807.751953125 0.9511572577835214 -2 0.01560211181640625 4 Unmodified _SLAAKTGQH_ REV__ENSG00000147647|ENST00000351513|DPYS 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94353 NaN 993 1427 2418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2424 23.937 NaN 38410 35 0 5223.1 0.326 + 2733 DVTSITNSR 9 31 496.75383580671087 991.4931186802218 2 496.7544250488281 MULTI HCD FTMS 0 0 0 2423 9680.1240234375 0.5521952503768317 -3 0.032199859619140625 1 Unmodified _DVTSITNSR_ REV__ENSG00000109458|ENST00000262994|GAB1;REV__ENST00000507334.1_1_4:144359455-144361094:+|nuORF;REV__GAB1|p.P452Sfs*30|1|0.55|ENSG00000109458|chr4:143440149-143440150|-/T|frameshift_variant;REV__nc|ENSG00000109458|Q13480-2|GAB1 6.2057823575117 0.30397260197431997 2 N 1 -1 5.4846 0 0 0.55316 0 0 549.7619918265093 324.6577242486938 874.419716075203 0 0 0 0 0 0 0 0 0 N 0.55316 + + 5 + NaN NaN 96674.1 NaN 994 1428 2423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2426 23.944 NaN 13668 35 0 5838.3 0.327 -1 WERLNCAAE 9 12 574.7612853877166 NaN 0 574.7611083984375 PEAK HCD FTMS 0 0 0 2425 1667.897216796875 0.32318787993471626 -4 0.039806365966796875 1 Carbamidomethyl (C) _WERLNC(Carbamidomethyl (C))AAE_ ENSG00000174442|ENST00000307897|ZWILCH;ENST00000535141.6_1_15:66797640-66806344:+|nuORF;ENST00000567926.5_1_15:66797640-66797730:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94585 NaN 995 1429 2425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2427 23.949 NaN 32507 35 0 8747.1 0.261 + 31143 VTVLKKALDE 10 14 558.3369750976562 NaN 0 558.3369750976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VTVLKKALDE_ ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133392|P35749-3|MYH11;nc|ENSG00000133392|P35749-4|MYH11 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83749.6 NaN 996 1429 2425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2429 23.954 NaN 94255 35 0 18267 0.327 + 2564 DTFRVFFKGS 10 39 401.8778842771242 NaN 0 401.8778381347656 PEAK HCD FTMS 0 0 0 2428 30493.40234375 0.30357186328377317 652 -9.881309509277344 1 Unmodified _DTFRVFFKGS_ CON__Q3T052 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103778.1 NaN 997 1430 2428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2430 23.959 NaN 25815 35 0 5404.3 0.261 -1 EQIRFVMK 8 17 546.796485089989 NaN 0 546.7962036132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EQIRFVMK_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1;SOAT1|p.S269L|1|0.21|ENSG00000057252|chr1:179342139-179342139|C/T|missense_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85342.6 NaN 998 1430 2428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2431 23.962 NaN 23730 35 0 5174.8 0.261 + -1 VCLIDEMK 8 16 512.246026333371 NaN 0 512.2461547851562 PEAK HCD FTMS 0 0 0 2428 5890.529296875 0.8049930129154633 14 -0.15180206298828125 3 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))LIDEM(Oxidation (M))K_ REV__ENSG00000125485|ENST00000372159|DDX31;REV__nc|ENSG00000125485|Q9H8H2|DDX31 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104404 NaN 999 1430 2428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2432 23.966 NaN 48329 35 0 11055 0.261 -1 0 32 485.3585617622165 NaN 0 485.3589782714844 PEAK HCD FTMS 0 0 0 2428 4819.5771484375 0.6906964278716698 -27 0.2751655578613281 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88204 NaN 1000 1430 2428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2436 23.986 NaN 24701 35 0 4000.2 0.412 -1 MPWTLLWE 8 26 546.2649740343819 NaN 0 546.264892578125 PEAK HCD FTMS 0 0 0 2435 3480.638671875 0.8013466643268966 1 -0.00806427001953125 1 Oxidation (M) _M(Oxidation (M))PWTLLWE_ ENST00000261247.13_1_14:59951192-59953485:+|nuORF;ENST00000356057.9_1_14:59951820-59953485:+|nuORF;ENST00000425728.6_1_14:59951243-59953485:+|nuORF;ENST00000553941.5_1_14:59953416-59953485:+|nuORF;ENST00000557560.5_1_14:59951820-59953485:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97786.2 NaN 1001 1433 2435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2438 23.994 NaN 64392 35 0 10349 0.327 + -1 GLVCFRGH 8 29 473.2403163059532 NaN 0 473.24884033203125 PEAK HCD FTMS 0 0 0 2437 1522.3642578125 0.8282387306687748 1 -0.013254165649414062 1 Carbamidomethyl (C) _GLVC(Carbamidomethyl (C))FRGH_ REV__ENST00000317905.9_1_17:73662638-73663236:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100478.3 NaN 1002 1434 2437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2439 23.999 NaN 47214 35 0 5385.8 0.261 -1 0 23 484.76166389178303 967.5087748503661 2 484.7621154785156 MULTI HCD FTMS 0 0 0 2437 9581.841796875 0.13006090342842655 -11 0.11284828186035156 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 109280.2 NaN 1003 1434 2437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2440 24.002 NaN 47672 35 0 9556.2 0.261 -1 TAVKNDYEM 9 31 543.742179236445 1085.46980553969 2 543.7420654296875 MULTI HCD FTMS 0 0 0 2437 11148.224609375 0.02728837888329461 97 -1.0533313751220703 3 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 16.149105407346934 0.22083165093524068 2 E{M(Oxidation (M))|F} 2 -1 28.029 0 0 2.5822 0 0 791.3764515607437 0 791.3764515607437 0 17.57129707683461 0 0 0 0.7059771852360797 0 0 0 E{M(Oxidation (M))|F} 2.5822 + + 6 NaN NaN 95971.8 NaN 1004 1434 2437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2442 24.008 NaN 51994 35 0 17351 0.327 + 32698 WPLPCRAPL 9 20 526.7909926956687 NaN 0 526.7777709960938 PEAK HCD FTMS 0 0 0 2441 1376.780029296875 0.3885689988239487 -1 0.013254165649414062 1 Unmodified _WPLPCRAPL_ REV__ENSG00000181652|ENST00000639579|ATG9B 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91702.6 NaN 1005 1435 2441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2443 24.012 NaN 33075 35 0 11305 0.261 + 495 AMKRRHFF 8 18 546.7985229492188 NaN 0 546.7985229492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _AMKRRHFF_ REV__ENST00000609263.1_1_1:165619003-165619255:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91405.9 NaN 1006 1435 2441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2445 24.017 NaN 72152 35 0 11933 0.327 + 2345 DPAGVHPPR 9 29 473.2487248402364 944.4828967472728 2 473.2484130859375 MULTI HCD FTMS 0 0 0 2444 16934.166015625 0.7697040689958231 1 -0.013324737548828125 1 Unmodified _DPAGVHPPR_ ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 10.073929032068715 0.27331982688540024 2 D[PA]RH 5 5 21.198 0 0 2.2444 0 0 0 365.19379602603755 365.19379602603755 21.197887582883936 0 0 0 0 0.5 0 0 0 D[PA]RH 2.2444 - 7 + NaN NaN 90442.9 NaN 1007 1436 2444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2446 24.022 NaN 23870 35 0 5116.7 0.261 + 30510 VMPKGFLVYG 10 17 555.8041983554195 1109.593843777639 2 555.8043212890625 MULTI HCD FTMS 0 0 0 2444 12672.30859375 0.7584750077124963 2 -0.026767730712890625 2 Unmodified _VMPKGFLVYG_ REV__ENSG00000185946|ENST00000423855|RNPC3;REV__nc|ENSG00000185946|Q96LT9-2|RNPC3 1.4819007175156935 0.4674597685733628 2 V[YG] 3 -1 10.458 0 0 0.94247 0 0 772.4159413068375 0 772.4159413068375 0 10.45757490560675 0 0 0 0 0 0 0 V[YG] 0.94247 + + 1 NaN NaN 90138.5 NaN 1008 1436 2444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2447 24.025 NaN 50242 35 0 9944 0.261 + 3805 EPEGRPRPL 9 30 525.7884007820926 1049.562248630985 2 525.7894287109375 MULTI HCD FTMS 0 0 0 2444 10569.3896484375 0.8478449900002899 -3 0.03145027160644531 3 Unmodified _EPEGRPRPL_ ENST00000258149.9_1_12:69201984-69202068:+|nuORF 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97520.1 NaN 1009 1436 2444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2449 24.031 NaN 122250 35 0 16876 0.327 -1 MPVRAADKL 9 38 508.7812516830532 1015.5479504329064 2 508.7812805175781 MULTI HCD FTMS 0 0 0 2448 53454.47265625 0.7165007684229883 -3 0.03671073913574219 1 Oxidation (M) _M(Oxidation (M))PVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 13.90604991867851 0.24021115267848145 2 DK{I|L} 3 -1 34.693 0 0 3.4162 0 0 641.335741111525 0 641.335741111525 0 25.228787452803374 0 0 0 0.5 0 0.3494850021680094 0 DK{I|L} 3.4162 + + 11 NaN NaN 98939.6 NaN 1010 1437 2448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2450 24.035 NaN 36112 35 0 4956.8 0.261 + 21738 QAEEGSARL 9 18 480.7410084118234 959.4674638904468 2 480.7407531738281 MULTI HCD FTMS 0 0 0 2448 29586.75390625 0.823132560025943 2 -0.023584365844726562 2 Unmodified _QAEEGSARL_ ENSG00000147649|ENST00000336273|MTDH 11.494710602746466 0.2610445893512368 2 [QA]EE 4 5 16.198 0 0 1.6882 0 0 0 499.26410852603755 499.26410852603755 16.197887582883936 0 0 0 0 0 0 0 0 + [QA]EE 1.6882 + + 5 + NaN NaN 110178.5 NaN 1011 1437 2448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2451 24.039 NaN 56090 35 0 10623 0.261 + 12139 KKKKKKKKKSF 11 21 469.3284840754275 NaN 0 469.3284606933594 PEAK HCD FTMS 0 0 0 2448 10243.4677734375 0.5646901822190261 19 -0.19530677795410156 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97333 NaN 1012 1437 2448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2453 24.044 NaN 317920 35 0 46402 0.327 + 4070 ESGPSIVHR 9 57 491.2591052378132 980.5036575424264 2 491.2592468261719 MULTI HCD FTMS 0 0 0 2452 145293.625 0.05591305004543375 30 -0.3105659484863281 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 47.594388314883695 0.03493607795751234 2 ESGPS{I|L}VHR 9 0 + 94.32 0 0 9.6196 9.6196 99.202 0 0 0 72.30713133096572 21.478174818886373 21.478174818886373 94.32048784621223 0 0.6747425010840047 1.6989700043360187 0 0.5 + + ESGPS{I|L}VHR 9.6196 + + 78 + NaN NaN 138103.3 NaN 1013 1438 2452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2454 24.049 NaN 44186 35 0 8890 0.261 + 23605 RPHHAARF 8 19 496.2694617716619 990.5243706101238 2 496.7542419433594 MULTI HCD FTMS 0 0 0 2452 1734.315185546875 0.2777504952879708 -5 0.05821800231933594 2 Unmodified _RPHHAARF_ REV__ENSG00000114115|ENST00000672186|RBP1;REV__nc|ENSG00000114115|P09455-2|RBP1;REV__nc|ENSG00000114115|P09455-3|RBP1 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86228.4 NaN 1014 1438 2452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2456 24.054 NaN 414580 35 0 42786 0.327 -1 RYMPPAHRNF 10 59 435.5487008386898 1303.6242731162695 3 435.54852294921875 MULTI HCD FTMS 0 0 0 2455 215779.6875 0.8784521319634215 4 -0.044231414794921875 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 17.86316937532769 0.34402595751606074 2 {M(Oxidation (M))|F}N 2 -1 42.206 0 0 3.2376 0 0 0 1039.4904572305784 1039.4904572305784 16.760912590556813 0 0 0 0 0 1.6989700043360187 0 0.4247425010840047 {M(Oxidation (M))|F}N 3.2376 - 26 + NaN NaN 151765 NaN 1015 1439 2455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2457 24.059 NaN 159540 35 0 15879 0.261 -1 0 45 505.7485984741452 1009.4826440150904 2 505.7487487792969 MULTI HCD FTMS 0 0 0 2455 41442.1640625 0.0637794921703854 34 -0.3440570831298828 2 NaN NaN 2 ATE 3 -1 18.06 0 0 1.789 0 0 149.10785043890172 556.2309664361936 705.3388168750953 0 0 0 0 0 0 0 0.4247425010840047 0 ATE 1.789 - 11 + NaN NaN 118249 NaN 1016 1439 2455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2458 24.062 NaN 15655 35 0 5552.3 0.261 + 16965 LYIDYYYLL 9 15 619.820460410336 NaN 0 619.8206787109375 PEAK HCD FTMS 0 0 0 2455 1816.1126708984375 0.43657087512336296 -2 0.023584365844726562 3 Unmodified _LYIDYYYLL_ REV__ENSG00000113716|ENST00000502717|HMGXB3 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99073.6 NaN 1017 1439 2455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2459 24.066 NaN 23846 35 0 7692 0.262 + -1 ICCLRRNM 8 11 512.746337890625 NaN 0 512.746337890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _ICCLRRNM(Oxidation (M))_ REV__ENSG00000176299|ENST00000641200|OR4M1;REV__OR4M1|p.C189Vfs*9|1|0.12|ENSG00000176299|chr14:19780887-19780887|T/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92421.7 NaN 1018 1439 2455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2461 24.071 NaN 26275 35 0 4908.3 0.327 + -1 AGPRRRHCS 9 25 569.788429512279 NaN 0 569.7883911132812 PEAK HCD FTMS 0 0 0 2460 4409.4560546875 0.4867917892913381 -6 0.07690238952636719 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))AGPRRRHC(Carbamidomethyl (C))S_ REV__CCER1|p.W35R|1|0.19|ENSG00000197651|chr12:90954640-90954640|A/G|missense_variant;REV__ENSG00000197651|ENST00000358859|CCER1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87664 NaN 1019 1440 2460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2462 24.076 NaN 75933 35 0 12485 0.264 + 2792 DYHCNWCLF 9 32 400.8263094085057 NaN 0 400.3498229980469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DYHCNWCLF_ REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99055.9 NaN 1020 1440 2460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2465 24.089 NaN 130610 35 0 17105 0.327 -1 0 37 454.23181297094453 1359.6736095130336 3 454.5661926269531 MULTI HCD FTMS 0 0 0 2464 38233.7265625 0.5388963932640553 -8 0.09462356567382812 1 NaN NaN 2 NAV{[{M(Oxidation (M))|F}H]|[RQ]} 5 -1 27.447 0 0 2.0187 0 0 773.3549780787835 0 773.3549780787835 0 18.863781092484686 0 0 0 1 0 0 0 NAV{[{M(Oxidation (M))|F}H]|[RQ]} 2.0187 - 21 + NaN NaN 101156.2 NaN 1021 1442 2464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2466 24.093 NaN 24330 35 0 4422.1 0.261 + 5647 FNESGQLVVF 10 20 570.2903491820693 NaN 0 570.2910766601562 PEAK HCD FTMS 0 0 0 2464 2104.622802734375 0.3141036006791504 2 -0.017457962036132812 2 Unmodified _FNESGQLVVF_ ENSG00000065308|ENST00000182527|TRAM2 1.3295316138638542 0.339046394236575 2 S 1 9 3.9794 0 0 0.34951 0 0 390.1505703350386 658.3515719049436 1048.5021422399823 0 0 0 0 0 0 0 0 0 + S 0.34951 + + 1 + NaN NaN 91510.2 NaN 1022 1442 2464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2469 24.106 NaN 35246 35 0 4580.8 0.411 + 21753 QAEQEDRAL 9 31 530.2567004832 1058.4988480332 2 530.2562866210938 MULTI HCD FTMS 0 0 0 2468 7622.24169921875 0.12789411902809342 -16 0.16933441162109375 1 Unmodified _QAEQEDRAL_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 7.608950283845883 0.29333554423920943 2 [QA]EQED 6 3 19.385 0 0 1.8314 0 0 0 355.2090242975219 355.2090242975219 12.395775165767876 0 0 0 0 0 0 0 0 + [QA]EQED 1.8314 + + 17 + NaN NaN 97710.9 NaN 1023 1444 2468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2471 24.114 NaN 63518 35 0 10063 0.327 + 8948 HPDRSQPAF 9 24 527.7568172604593 1053.4990815877186 2 527.756591796875 MULTI HCD FTMS 0 0 0 2470 19932.146484375 0.1590564886979089 -15 0.15980911254882812 1 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 20.41453444215458 0.18397929046831515 2 HPV 3 7 30.177 0 0 2.8645 0 0 0 717.3087252252561 717.3087252252561 30.17728766960431 0 0 0 0 0.8494850021680094 0 0 0 HPV 2.8645 - 14 + NaN NaN 91732 NaN 1024 1445 2470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2472 24.119 NaN 14153 35 0 4419.8 0.261 -1 YCFDLRFQ 8 14 574.7612853877166 NaN 0 574.760986328125 PEAK HCD FTMS 0 0 0 2470 3483.083984375 0.6749160063391442 8 -0.08878135681152344 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))FDLRFQ_ ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97001.1 NaN 1025 1445 2470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2474 24.124 NaN 111490 35 0 18469 0.327 + 25134 SAHNKDIAL 9 33 484.76166389178303 967.5087748503661 2 484.76141357421875 MULTI HCD FTMS 0 0 0 2473 58711.9921875 0.7969380947699849 1 -0.009939193725585938 1 Unmodified _SAHNKDIAL_ ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888-3|TP53BP1;nc|ENSG00000067369|Q12888|TP53BP1 10.799506525563784 0.2670509983294061 2 {I|L}A{I|L} 3 6 23.672 0 0 2.4467 0 0 652.2872791974625 0 652.2872791974625 0 13.214562785677655 0 0 0 0.5 0 0 0 + {I|L}A{I|L} 2.4467 + + 12 NaN NaN 106177.2 NaN 1026 1446 2473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2475 24.129 NaN 28032 35 0 12032 0.261 + -1 WKAYMLDF 8 15 545.2565539629699 NaN 0 545.2567138671875 PEAK HCD FTMS 0 0 0 2473 6895.68359375 0.5170061850990183 -7 0.0697479248046875 2 Oxidation (M) _WKAYM(Oxidation (M))LDF_ REV__ENSG00000152086|ENST00000312988|TUBA3E 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85059.7 NaN 1027 1446 2473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2478 24.142 NaN 30748 35 0 3568.8 0.327 -1 TAVKNDYEM 9 22 543.7422502191591 1085.4699475051182 2 543.7427368164062 MULTI HCD FTMS 0 0 0 2477 9199.1171875 0.04724611682787634 -39 0.39547157287597656 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 5.296884461304476 0.3108627248283497 2 V[PG] 3 -1 11.695 0 0 1.0774 0 0 814.31450087715 0 814.31450087715 0 11.694699959806984 0 0 0 0.4247425010840047 0 0 0 V[PG] 1.0774 - 2 NaN NaN 94326.6 NaN 1028 1448 2477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2479 24.146 NaN 27145 35 0 8239.2 0.261 + 27851 TDKLRPLSV 9 10 514.8084005882226 1027.6022482432452 2 514.80810546875 MULTI HCD FTMS 0 0 0 2477 7257.39306640625 0.8340839624959273 -7 0.06047248840332031 2 Unmodified _TDKLRPLSV_ REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81995.9 NaN 1029 1448 2477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2481 24.152 NaN 87271 35 0 14829 0.327 -1 IQMRPDLK 8 35 508.7812516830532 1015.5479504329064 2 508.78106689453125 MULTI HCD FTMS 0 0 0 2480 32876.8203125 0.4406790647565488 9 -0.09259986877441406 1 Oxidation (M) _IQM(Oxidation (M))RPDLK_ ENSG00000120251|ENST00000264426|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000120251|P42262-4|GRIA2 7.289230182591677 0.5311777711368266 2 DK{I|L} 3 -1 26.198 0 0 2.5797 0 0 641.3298207013687 0 641.3298207013687 0 26.197887582883936 0 0 0 0 0 0 0 DK{I|L} 2.5797 - 3 NaN NaN 106424.7 NaN 1030 1449 2480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2482 24.156 NaN 40740 35 0 8824.5 0.261 -1 TAVKNDYEM 9 24 543.7422502191591 1085.4699475051182 2 543.7413330078125 MULTI HCD FTMS 0 0 0 2480 12714.9755859375 0.0653033557190782 -38 0.3880424499511719 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 2.9952420565917617 0.3283108881486655 2 V[PG] 3 -1 10.458 0 0 0.96341 0 0 814.3171253888687 0 814.3171253888687 0 10.45757490560675 0 0 0 0 0 0 0 V[PG] 0.96341 - 1 NaN NaN 91660.2 NaN 1031 1449 2480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2484 24.162 NaN 26704 35 0 5520.5 0.411 + 1793 CMLMLRQK 8 32 511.7686462402344 NaN 0 511.7686462402344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _CMLMLRQK_ REV__ENST00000392011.6_1_2:235963415-235963535:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97528.2 NaN 1032 1450 2483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2486 24.17 NaN 200950 35 0 36337 0.327 + 2590 DTSGGTTALR 10 45 489.74619264799037 977.4778323627808 2 489.7460632324219 MULTI HCD FTMS 0 0 0 2485 85794.265625 0.7869095598303055 -2 0.01802825927734375 1 Unmodified _DTSGGTTALR_ ENSG00000167986|ENST00000301764|DDB1 47.7319792270244 0.08603782309361356 2 {[ES]|[DT]|[{I|L}C]}SGGTTA{I|L}R 10 0 + 67.942 0 0 6.9507 6.9507 88.25 0 0 0 57.48441900057003 14.146518864155126 14.146518864155126 6.5321251377534395 0 1.305462187404089 0 0.805462187404089 0 + + {[ES]|[DT]|[{I|L}C]}SGGTTA{I|L}R;{[ES]|[DT]|[{I|L}C]}SNTTA{I|L}R 6.9507;6.2825 +;- + 79 + NaN NaN 112370.9 NaN 1033 1451 2485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2487 24.174 NaN 19633 35 0 4939 0.261 -1 LRVHSAMM 8 20 480.7410084118234 959.4674638904468 2 480.7402648925781 MULTI HCD FTMS 0 0 0 2485 7710.71826171875 0.21451975713586463 16 -0.17528724670410156 2 Oxidation (M) _LRVHSAM(Oxidation (M))M_ ENST00000564053.5_1_16:67205057-67205261:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89547.3 NaN 1034 1451 2485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2488 24.177 NaN 36021 35 0 4440.1 0.261 + 23606 RPHHAARF 8 28 496.2694617716619 990.5243706101238 2 496.2693786621094 MULTI HCD FTMS 0 0 0 2485 4363.94189453125 0.3762679015950738 7 -0.07457160949707031 3 Unmodified _RPHHAARF_ REV__ENSG00000114115|ENST00000672186|RBP1;REV__nc|ENSG00000114115|P09455-2|RBP1;REV__nc|ENSG00000114115|P09455-3|RBP1 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91590.8 NaN 1035 1451 2485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2489 24.181 NaN 13703 35 0 3509.5 0.261 + 2592 DTSPPTLSLTF 11 15 589.7990157080319 NaN 0 589.7996215820312 PEAK HCD FTMS 0 0 0 2485 4536.80322265625 1 0 0 4 Unmodified _DTSPPTLSLTF_ REV__ENSG00000074219|ENST00000593945|TEAD2;REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF;REV__nc|ENSG00000074219|Q15562-2|TEAD2;REV__nc|ENSG00000074219|Q15562-3|TEAD2;REV__nc|ENSG00000074219|Q15562|TEAD2 1.3295316138638542 0.3383486451652214 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97580 NaN 1036 1451 2485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2491 24.186 NaN 223860 35 0 24980 0.327 + 4071 ESGPSIVHR 9 54 491.2591052378132 980.5036575424264 2 491.2591247558594 MULTI HCD FTMS 0 0 0 2490 77326.9375 0.02975756800270919 44 -0.5005836486816406 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 47.594388314883695 0.03493607795751234 2 ESGPS{I|L}VHR 9 0 + 85.047 0 0 8.6738 8.6738 98.228 0 0 0 75.583362792012 21.478174818886373 21.478174818886373 85.04731294377265 0 0.6505149978319906 1.3979400086720375 0 0.5 + + ESGPS{I|L}VHR 8.6738 + + 49 + NaN NaN 118782 NaN 1037 1452 2490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2492 24.191 NaN 121090 35 0 15002 0.261 -1 0 35 505.7485984741452 1009.4826440150904 2 505.74853515625 MULTI HCD FTMS 0 0 0 2490 25852.873046875 0.03978757266605113 47 -0.5300979614257812 2 NaN NaN 2 A 1 -1 5.4846 0 0 0.5433 0 0 149.11022784474613 786.3159583973325 935.4261862420785 0 0 0 0 0 0 0 0 0 A 0.5433 - 2 + NaN NaN 114215 NaN 1038 1452 2490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2493 24.194 NaN 48716 35 0 8590.6 0.261 + 12140 KKKKKKKKKSF 11 24 469.3284840754275 NaN 0 469.32830810546875 PEAK HCD FTMS 0 0 0 2490 9793.3837890625 0.5398784668144396 34 -0.3502216339111328 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 P 1 11 3.9794 0 0 0.42486 0 0 467.81677542448944 368.7563570611938 836.5731324856832 0 0 0 0 0 0 0 0 0 P 0.42486 - 1 + NaN NaN 94079.5 NaN 1039 1452 2490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2494 24.198 NaN 28823 35 0 6407.5 0.261 + 8222 GRNWCPYP 8 16 496.72482824584745 NaN 0 496.711669921875 PEAK HCD FTMS 0 0 0 2490 4321.32421875 0.8386812966873969 -1 0.016584396362304688 4 Unmodified _GRNWCPYP_ ENSG00000173269|ENST00000372027|MMRN2;MMRN2|p.V53I|1|0.13|ENSG00000173269|chr10:86957385-86957385|C/T|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89846.7 NaN 1040 1452 2490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2496 24.203 NaN 84650 35 0 7645.5 0.327 + 28680 TSETPQPPR 9 31 506.75659515389935 1011.4986373745987 2 506.75640869140625 MULTI HCD FTMS 0 0 0 2495 37553.43359375 0.15143118431015956 -56 0.5988674163818359 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 11.494710602746466 0.2610445893512368 2 EET 3 7 20.445 0 0 2.0213 0 0 59.036675559948726 590.3033437433573 649.3400193033061 0 0 0 0 0 0.4247425010840047 0 0 0 EET 2.0213 - 7 + NaN NaN 94369.8 NaN 1041 1453 2495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2498 24.211 NaN 190900 35 0 21637 0.411 -1 CNWVRRWQR 9 68 454.23181297094453 1359.6736095130336 3 454.2317199707031 MULTI HCD FTMS 0 0 0 2497 67882.4921875 0.598908160939355 5 -0.0468292236328125 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))NWVRRWQR_ NPIPB6|p.M235Rfs*23|1|0.15|ENSG00000198156|chr16:28343181-28343181|A/-|frameshift_variant 7.608950283845883 0.29333554423920943 2 {[CA]|SS}WWVQNAVQR 11 -1 {[CA]|SS}WWV + + 64.686 -2.5084 -0.38872 4.7574 4.7574 61.945 0 0 0 0 45.75765943524473 0 0 0 1.9247425010840047 0 0 0.7302046884880937 {[CA]|SS}WWVQNAVQR 4.7574 - 176 + NaN NaN 140372.2 NaN 1042 1454 2497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2501 24.226 NaN 79566 35 0 6412.8 0.327 + 21754 QAEQEDRAL 9 39 530.2567004832 1058.4988480332 2 530.2567138671875 MULTI HCD FTMS 0 0 0 2500 46553.12890625 0.7811181597765867 -4 0.03995513916015625 1 Unmodified _QAEQEDRAL_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 31.26834338654808 0.10542797264966089 2 [QA]EQEDRA{I|L} 9 0 + 49.671 0 0 4.6926 4.6926 86.474 0 0 0 34.72234667441434 10.642492736872597 10.642492736872597 9.208187539523749 0 0.3494850021680094 0 0.3494850021680094 0.3807196863200844 + + [QA]EQEDRA{I|L};[QA]E[AG]EDRA{I|L} 4.6926;3.8226 +;- + 46 + NaN NaN 90457.3 NaN 1043 1456 2500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2502 24.231 NaN 35079 35 0 8905.4 0.261 + 30265 VKFYLPPTPG 10 17 559.8147656727514 NaN 0 559.815185546875 PEAK HCD FTMS 0 0 0 2500 4225.6240234375 0.6185817892992462 1 -0.009973526000976562 2 Unmodified _VKFYLPPTPG_ ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83939.1 NaN 1044 1456 2500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2504 24.236 NaN 195760 35 0 17480 0.411 + 8949 HPDRSQPAF 9 55 527.7568172604593 1053.4990815877186 2 527.7566528320312 MULTI HCD FTMS 0 0 0 2503 95331.5703125 0.760736172988221 -3 0.025524139404296875 1 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 56.17704186161178 0.022929533404884107 2 HPVH 4 7 35.165 0 0 3.3379 0 0 0 580.2456148736936 580.2456148736936 16.581531501239297 0 0 0 0 0.9247425010840047 0 0 0 HPVH 3.3379 - 55 + NaN NaN 138778.3 NaN 1045 1457 2503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2506 24.244 NaN 86674 35 0 20199 0.327 + 8284 GVKVQEYHIM 10 27 401.8778842771242 NaN 0 401.87786865234375 PEAK HCD FTMS 0 0 0 2505 27268.828125 0.27147016492791914 680 -10.91493034362793 1 Unmodified _GVKVQEYHIM_ ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95407.8 NaN 1046 1458 2505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2507 24.249 NaN 42612 35 0 5130.9 0.261 + 21210 PQQLQQNL 8 21 484.76166389178303 967.5087748503661 2 484.76141357421875 MULTI HCD FTMS 0 0 0 2505 22565.05859375 0.3062910000847295 13 -0.13673973083496094 2 Unmodified _PQQLQQNL_ ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF;ENST00000529012.1_1_11:111795026-111796920:+|nuORF 2.302733041254933 0.5385759549224092 2 A{I|L} 2 7 20.969 0 0 2.1673 0 0 765.3738880841812 0 765.3738880841812 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 2.1673 - 1 NaN NaN 93343.6 NaN 1047 1458 2505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2508 24.252 NaN 16535 35 0 3647.6 0.261 -1 GFCPQRTPEG 10 14 574.7612061633115 1147.507859393423 2 574.7608642578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _GFC(Carbamidomethyl (C))PQRTPEG_ COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant;ENSG00000080573|ENST00000264828|COL5A3 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92063.3 NaN 1048 1458 2505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2510 24.258 NaN 37815 35 0 3784.1 0.411 -1 ALDECQNLM 9 32 555.2333939563114 1108.4522349794227 2 555.2333374023438 MULTI HCD FTMS 0 0 0 2509 7349.8095703125 0.26783125368231253 -14 0.14320755004882812 1 Carbamidomethyl (C),Oxidation (M) _ALDEC(Carbamidomethyl (C))QNLM(Oxidation (M))_ ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 3.2813086475875832 0.32614229037259 2 [{I|L}A]D 3 -1 15.458 0 0 1.3945 0 0 0 806.2824913047884 806.2824913047884 13.674838288037687 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.3945 + + 3 + NaN NaN 106139.5 NaN 1049 1459 2509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2513 24.273 NaN 249210 35 0 27630 0.327 -1 RYMPPAHRNF 10 53 435.54871109776207 1303.6243038934863 3 435.5483703613281 MULTI HCD FTMS 0 0 0 2512 70935.9375 0.40813343344509606 -14 0.13913917541503906 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 15.738622578938676 0.3638982514236938 2 A 1 -1 5.4846 0 0 0.42072 0 0 660.3044319225863 569.2587094552998 1229.563141377886 0 0 0 0 0 0 0 0 0 A 0.42072 + + 19 + NaN NaN 132862.1 NaN 1050 1461 2512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2514 24.278 NaN 97218 35 0 16451 0.261 -1 MPVHAAVQM 9 33 508.2384033011583 1014.4622536691166 2 508.2384338378906 MULTI HCD FTMS 0 0 0 2512 37157.1328125 0.579762644278966 -7 0.06265449523925781 2 2 Oxidation (M) _M(Oxidation (M))PVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 23.1484247019978 0.1603590852062899 2 VQ{M(Oxidation (M))|F} 3 -1 38.984 0 0 3.8429 0 0 622.2887134853261 0 622.2887134853261 0 38.984484532805155 0 0 0 1.5 0 0 0.3807196863200844 VQ{M(Oxidation (M))|F} 3.8429 + + 19 + NaN NaN 110491.8 NaN 1051 1461 2512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2515 24.281 NaN 32022 35 0 4524 0.261 + 28544 TPQQDQAPG 9 21 471.219668119553 940.424783305906 2 471.2189636230469 MULTI HCD FTMS 0 0 0 2512 15783.11328125 0.3775442802954029 -12 0.12167167663574219 3 Unmodified _TPQQDQAPG_ ENSG00000185958|ENST00000327337|FAM186A 3.5964929083625545 0.32375295897743744 2 A[PG] 3 6 14.265 0 0 1.5168 0 0 697.3060169904312 0 697.3060169904312 0 14.264771768807593 0 0 0 0.3807196863200844 0 0 0 + A[PG] 1.5168 + + 3 NaN NaN 83069.8 NaN 1052 1461 2512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2516 24.284 NaN 28609 35 0 11825 0.261 + 15900 LPLPGWTLTP 10 17 547.8144959760899 NaN 0 547.7954711914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPLPGWTLTP_ REV__nc|ENSG00000248098|P12694-2|BCKDHA 1.6526216038709556 0.33876987398426067 2 T 1 -1 6.9897 0 0 0.63914 0 0 329.1990470285485 660.3482760065061 989.5473230350547 0 0 0 0 0 0 0 0 0 T 0.63914 + + 1 + NaN NaN 85988.8 NaN 1053 1461 2512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2518 24.29 NaN 37443 35 0 6020.1 0.327 -1 TAVKNDYEM 9 26 543.7422502191591 1085.4699475051182 2 543.7415161132812 MULTI HCD FTMS 0 0 0 2517 27913.94921875 0.14336437715007314 -25 0.25895118713378906 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 4.897010918128616 0.31389406404703984 2 E{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.5158 0 0 791.3827381818375 0 791.3827381818375 0 5.996075289514094 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.5158 + + 3 NaN NaN 93660.7 NaN 1054 1462 2517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2519 24.294 NaN 32650 35 0 6865.4 0.261 + 33239 YFGIYYFGS 9 12 558.7578309050846 NaN 0 558.7579956054688 PEAK HCD FTMS 0 0 0 2517 9068.5927734375 0.5283867718936881 -4 0.045612335205078125 2 Unmodified _YFGIYYFGS_ REV__ENSG00000179934|ENST00000326306|CCR8;REV__nc|ENSG00000179934|P51685-2|CCR8 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83886.8 NaN 1055 1462 2517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2520 24.298 NaN 48364 35 0 11319 0.264 + 34030 YMSNHNMDQA 10 23 404.15879700428513 NaN 0 404.1489562988281 PEAK HCD FTMS 0 0 0 2517 1570.95361328125 0.37876858384351847 7 -0.07315254211425781 3 Unmodified _YMSNHNMDQA_ REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92703.1 NaN 1056 1462 2517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2522 24.303 NaN 141680 35 0 24323 0.327 + 2591 DTSGGTTALR 10 43 489.74619264799037 977.4778323627808 2 489.7461242675781 MULTI HCD FTMS 0 0 0 2521 47998.02734375 0.4402404554039014 10 -0.09519386291503906 1 Unmodified _DTSGGTTALR_ ENSG00000167986|ENST00000301764|DDB1 35.61225514009592 0.18348312004207498 2 {[ES]|[DT]|[{I|L}C]}SGGTTA{I|L}R 10 0 + 54.206 0 0 5.5455 5.5455 85.865 0 0 0 40.7107918022669 11.091444694250683 11.091444694250683 6.5321251377534395 0 0.805462187404089 0 0.4247425010840047 0 + + {[ES]|[DT]|[{I|L}C]}SGGTTA{I|L}R;{[ES]|[DT]|[{I|L}C]}SNTTA{I|L}R 5.5455;4.8772 +;- + 90 + NaN NaN 105437.4 NaN 1057 1463 2521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2523 24.308 NaN 55488 35 0 6940.2 0.261 + 29556 VAAEVAGAGR 10 36 450.7482665281919 899.4819801231838 2 450.7481689453125 MULTI HCD FTMS 0 0 0 2521 18352.796875 0.37742552693430426 -7 0.07714080810546875 2 Unmodified _VAAEVAGAGR_ ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF 23.789781309258295 0.28859042913526417 2 {[VA]|[{I|L}G]}AEVA 6 4 41.401 0 0 4.6028 0 0 0 356.16864954166255 356.16864954166255 41.40092514408778 0 0 0 0 1.5994850021680094 0 0 0 + {[VA]|[{I|L}G]}AEVA 4.6028 + + 22 + NaN NaN 100190.3 NaN 1058 1463 2521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2524 24.311 NaN 30231 35 0 3611.5 0.261 -1 TQFCTCISM 9 23 582.2295477092982 1162.4445424853964 2 582.732177734375 MULTI HCD FTMS 0 0 0 2521 5564.76806640625 0.6919608907575444 -3 0.03761100769042969 3 2 Carbamidomethyl (C),Oxidation (M) _TQFC(Carbamidomethyl (C))TC(Carbamidomethyl (C))ISM(Oxidation (M))_ ENSG00000221947|ENST00000408926|XKR9 1.6526216038709556 0.33848895094777925 2 S 1 -1 5.4846 0 0 0.47181 0 0 608.4020142644964 463.99446877212034 1072.3964830366167 0 0 0 0 0 0 0 0 0 S 0.47181 + + 2 + NaN NaN 90806.7 NaN 1059 1463 2521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2526 24.317 NaN 47689 35 0 15182 0.327 + 20577 PEGSEAQLR 9 19 493.74866897899705 985.4827850247941 2 493.7481994628906 MULTI HCD FTMS 0 0 0 2525 16914.537109375 0.5772267764388773 -19 0.20252609252929688 1 Unmodified _PEGSEAQLR_ REV__ENSG00000169026|ENST00000322224|SLC49A3;REV__ENST00000512400.1_1_4:675749-678780:-|nuORF;REV__nc|ENSG00000169026|Q6UXD7-3|SLC49A3;REV__nc|ENSG00000169026|Q6UXD7|SLC49A3 1.844237919475145 0.33703635659052655 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}P 3 -1 10.458 0 0 1.0612 0 0 0 612.3098848932249 612.3098848932249 10.45757490560675 0 0 0 0 0 0 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}P 1.0612 - 2 + NaN NaN 89090.1 NaN 1060 1464 2525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2527 24.321 NaN 31578 35 0 9331.8 0.261 + 28338 TPAAGEKQL 9 20 457.75045729877866 913.4863616643573 2 457.7502746582031 MULTI HCD FTMS 0 0 0 2525 13141.1572265625 0.6525904210434429 -2 0.026952743530273438 2 Unmodified _TPAAGEKQL_ ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24 2.9952420565917617 0.3283108881486655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93126.8 NaN 1061 1464 2525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2529 24.327 NaN 133220 35 0 15558 0.327 + 28681 TSETPQPPR 9 43 506.75659515389935 1011.4986373745987 2 506.7563171386719 MULTI HCD FTMS 0 0 0 2528 50013.49609375 0.20167537879222242 -44 0.46163368225097656 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 26.268140514670165 0.13340543277302316 2 {[MG]|[TS]}ET 4 5 25.445 0 0 2.5156 0 0 0 590.3045003976277 590.3045003976277 23.85151878060192 0 0 0 0 0.9247425010840047 0 0 0 + {[MG]|[TS]}ET 2.5156 + + 21 + NaN NaN 112833.1 NaN 1062 1465 2528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2530 24.331 NaN 52019 35 0 8731 0.261 -1 HTGPLHKC 8 25 475.23829343754 NaN 0 475.2509460449219 PEAK HCD FTMS 0 0 0 2528 1746.208984375 0.391218383250132 6 -0.05403709411621094 2 Carbamidomethyl (C) _HTGPLHKC(Carbamidomethyl (C))_ ENSG00000159640|ENST00000290866|ACE;ENST00000579314.5_1_17:61565977-61574724:+|nuORF;nc|ENSG00000159640|P12821-3|ACE 2.302733041254933 0.38822285293237185 2 V 1 -1 3.0989 0 0 0.32673 0 0 457.209788924105 389.1610201471313 846.3708090712363 0 0 0 0 0 0 0 0 0 V 0.32673 - 1 + NaN NaN 99776.6 NaN 1063 1465 2528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2532 24.337 NaN 26592 35 0 6391.8 0.411 -1 EMRMRMMM 8 22 582.2295477092982 1162.4445424853964 2 582.2296142578125 MULTI HCD FTMS 0 0 0 2531 10650.2744140625 0.9392596561958656 -1 0.00995635986328125 1 3 Oxidation (M) _EM(Oxidation (M))RMRM(Oxidation (M))MM(Oxidation (M))_ ENST00000529941.1_1_11:124767484-124767703:-|nuORF 1.844237919475145 0.5392561982033289 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99583.1 NaN 1064 1466 2531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2534 24.345 NaN 136200 35 0 13113 0.327 + 4072 ESGPSIVHR 9 45 491.2591052378132 980.5036575424264 2 491.2589416503906 MULTI HCD FTMS 0 0 0 2533 54170.47265625 0.02084631275882687 59 -0.6536159515380859 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 24.020572477871973 0.15282392193088168 2 {I|L}VHR 4 5 29.553 0 0 3.014 0 0 457.18183244652636 0 457.18183244652636 0 13.042359562158126 0 0 0 0 0 0 0 + {I|L}VHR 3.014 + + 57 + NaN NaN 96541 NaN 1065 1467 2533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2535 24.349 NaN 18923 35 0 4447.9 0.261 + -1 KKCKFYEKI 9 8 643.3523333775474 1284.6901138218948 2 643.8538818359375 MULTI HCD FTMS 0 0 0 2533 4712.1513671875 0.5102959313536893 -1 0.008056640625 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KKC(Carbamidomethyl (C))KFYEKI_ REV__ENST00000510537.1_1_5:80538151-80538241:-|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85848.2 NaN 1066 1467 2533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2537 24.355 NaN 166050 35 0 14097 0.411 + 8950 HPDRSQPAF 9 48 527.7568172604593 1053.4990815877186 2 527.7566528320312 MULTI HCD FTMS 0 0 0 2536 83817.5625 0.6688555692142033 8 -0.07696533203125 1 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 57.72198328787511 0.020768266150574023 2 HPVQ 4 6 38.66 0 0 3.6697 0 0 0 589.2486666315061 589.2486666315061 16.269184659718547 0 0 0 0 0.9247425010840047 0 0 0.5 HPVQ 3.6697 - 51 + NaN NaN 128977.4 NaN 1067 1468 2536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2539 24.363 NaN 29111 35 0 4801.1 0.411 -1 VPTEENEM 8 31 482.70007759234625 963.3856022514925 2 482.6998291015625 MULTI HCD FTMS 0 0 0 2538 8243.107421875 0.14169477584004378 -14 0.14435958862304688 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 13.90604991867851 0.4914777452512057 2 ENE{M(Oxidation (M))|F} 4 -1 38.047 0 0 3.9493 0 0 426.209276267775 0 426.209276267775 0 38.047444008242906 0 0 0 0.8494850021680094 0 0 0 ENE{M(Oxidation (M))|F} 3.9493 + + 10 NaN NaN 94768 NaN 1068 1469 2538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2541 24.371 NaN 30718 35 0 4603.5 0.327 + 21755 QAEQEDRAL 9 24 530.2567004832 1058.4988480332 2 530.2567138671875 MULTI HCD FTMS 0 0 0 2540 15166.9638671875 0.25448753249633743 10 -0.102294921875 1 Unmodified _QAEQEDRAL_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92271.5 NaN 1069 1470 2540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2542 24.375 NaN 20566 35 0 3071.3 0.261 -1 CLVHYRGDE 9 18 574.7612061633115 1147.507859393423 2 574.7614135742188 MULTI HCD FTMS 0 0 0 2540 15041.0654296875 0.40721358956242215 -17 0.16796493530273438 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LVHYRGDE_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100579.5 NaN 1070 1470 2540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2544 24.381 NaN 69836 35 0 13813 0.327 + 26039 SPEGKEESL 9 31 488.23489506454627 974.4552371958926 2 488.2347717285156 MULTI HCD FTMS 0 0 0 2543 25941.794921875 0.7290680145165904 9 -0.09234046936035156 1 Unmodified _SPEGKEESL_ nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2 20.41453444215458 0.18397929046831515 2 S{I|L} 2 7 21.454 0 0 2.2016 0 0 756.3304310529312 0 756.3304310529312 0 6.704328361272969 0 0 0 0.3494850021680094 0 0 0 + S{I|L} 2.2016 + + 6 NaN NaN 93583.7 NaN 1071 1471 2543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2545 24.385 NaN 65675 35 0 9084 0.261 -1 ALDECQNLM 9 23 555.2333939563114 1108.4522349794227 2 555.2337036132812 MULTI HCD FTMS 0 0 0 2543 20293.921875 0.7395220904588765 -2 0.017974853515625 2 Carbamidomethyl (C),Oxidation (M) _ALDEC(Carbamidomethyl (C))QNLM(Oxidation (M))_ ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 3.2813086475875832 0.32614229037259 2 [{I|L}A]D 3 -1 15.458 0 0 1.3945 0 0 0 806.2834165509636 806.2834165509636 14.488474775526187 0 0 0 0 0.5 0 0 0 [{I|L}A]D 1.3945 + + 2 + NaN NaN 90125 NaN 1072 1471 2543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2548 24.398 NaN 346960 35 0 37280 0.327 -1 RYMPPAHRNF 10 59 435.54871109776207 1303.6243038934863 3 435.5484619140625 MULTI HCD FTMS 0 0 0 2547 164705.390625 0.9476406311356212 -2 0.0175628662109375 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 19.625955294349634 0.3275374527965692 2 {M(Oxidation (M))|F}N 2 -1 42.206 0 0 3.2376 0 0 0 1039.490637936451 1039.490637936451 26.989700043360187 0 0 0 0 0 1.6989700043360187 0 0.4247425010840047 {M(Oxidation (M))|F}N 3.2376 - 15 + NaN NaN 145929.5 NaN 1073 1473 2547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2549 24.403 NaN 59276 35 0 12408 0.261 + 16375 LSESKPQGQ 9 14 487.2510970885921 972.4876412439842 2 487.25103759765625 MULTI HCD FTMS 0 0 0 2547 21140.16796875 0.6664104157323544 -6 0.05358695983886719 2 Unmodified _LSESKPQGQ_ nc|ENSG00000236882|Q52M75|LINC01554 14.838274106304384 0.23215694253501695 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 110107.8 NaN 1074 1473 2547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2550 24.406 NaN 90406 35 0 16755 0.262 + 20491 PCPSAQFQVVK 11 33 401.8778842771242 NaN 0 401.87774658203125 PEAK HCD FTMS 0 0 0 2547 23248.07421875 0.23144223556253637 695 -11.532821655273438 3 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99002.3 NaN 1075 1473 2547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2552 24.412 NaN 133040 35 0 17556 0.327 + 27800 TAVKNDYEM 9 36 543.7422502191591 1085.4699475051182 2 543.7420043945312 MULTI HCD FTMS 0 0 0 2551 92597.6875 0.4755761963290225 -13 0.1384735107421875 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 51.41523569358685 0.02959097413485123 2 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 70.468 0 0 6.4919 6.4919 94.468 0 0 0 54.26985621489237 14.973024840566467 14.973024840566467 70.46774379777631 0 2.2302046884880937 0 1.2302046884880937 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 6.4919 + + 32 + NaN NaN 99476 NaN 1076 1474 2551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2553 24.416 NaN 63921 35 0 11739 0.261 + 27506 TAADDHQAL 9 29 471.219668119553 940.424783305906 2 471.2196044921875 MULTI HCD FTMS 0 0 0 2551 34726.2734375 0.8306793266115337 1 -0.0101318359375 2 Unmodified _TAADDHQAL_ ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 8.745405648335112 0.2847203663274469 2 [TA]Y 3 7 32.447 0 0 3.4503 0 0 0 602.2636202447874 602.2636202447874 29.683065105678033 0 0 0 0 0.5 1.6989700043360187 0 0 [TA]Y 3.4503 - 13 + NaN NaN 88157.4 NaN 1077 1474 2551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2555 24.422 NaN 51153 35 0 3690.8 0.327 + 25401 SEMDLINK 8 37 475.23734752052843 NaN 0 475.2268371582031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SEMDLINK_ ENSG00000124177|ENST00000373233|CHD6 2.577480529830294 0.38822285293237185 2 D 1 7 6.9897 0 0 0.73695 0 0 188.10015626097749 642.3152559869749 830.4154122479524 0 0 0 0 0 0 0 0 0 + D 0.73695 + + 5 + NaN NaN 90749.4 NaN 1078 1475 2554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2556 24.426 NaN 41969 35 0 11391 0.261 -1 QTCTVCGKGM 10 20 550.7323299681583 NaN 0 550.7321166992188 PEAK HCD FTMS 0 0 0 2554 2016.978271484375 0.10754955546328329 -18 0.18573570251464844 2 Carbamidomethyl (C),Oxidation (M) _QTCTVC(Carbamidomethyl (C))GKGM(Oxidation (M))_ ENSG00000171435|ENST00000339824|KSR2;ENST00000545002.1_1_12:117955650-118115004:-|nuORF;KSR2|p.L536Sfs*61|1|0.67|ENSG00000171435|chr12:117539800-117539800|G/-|frameshift_variant;nc|ENSG00000171435|Q6VAB6-2|KSR2 2.498486711656943 0.3380459306859131 2 G 1 -1 6.9897 0 0 0.63575 0 0 165.05400212206024 874.3662813775999 1039.4202834996602 0 0 0 0 0 0 0 0 0 G 0.63575 + + 1 + NaN NaN 88212.2 NaN 1079 1475 2554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2558 24.432 NaN 80905 35 0 8444.1 0.327 + 29557 VAAEVAGAGR 10 39 450.7482665281919 899.4819801231838 2 450.74810791015625 MULTI HCD FTMS 0 0 0 2557 26402.4140625 0.5429660180814674 6 -0.06573867797851562 1 Unmodified _VAAEVAGAGR_ ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF 28.494509381512117 0.24525010509582015 2 {[VA]|[{I|L}G]}AEVAG{[{M(Oxidation (M))|F}H]|[RQ]} 9 2 + 61.137 0 0 6.7969 6.7969 91.161 0 0 0 56.07509072285026 4.762036441594191 4.762036441594191 11.478174818886373 0 1.305462187404089 1.6989700043360187 0 0 {[VA]|[{I|L}G]}AEVAG{[{M(Oxidation (M))|F}H]|[RQ]};{[VA]|[{I|L}G]}AEVQ{[{M(Oxidation (M))|F}H]|[RQ]} 6.7969;5.5208 -;- 57 + NaN NaN 102384.4 NaN 1080 1476 2557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2559 24.436 NaN 44719 35 0 12038 0.261 + -1 AMMWFRRS 8 20 558.7578309050846 NaN 0 558.7579345703125 PEAK HCD FTMS 0 0 0 2557 5074.982421875 0.29569676865038946 10 -0.1045989990234375 2 2 Oxidation (M) _AM(Oxidation (M))M(Oxidation (M))WFRRS_ REV__ENSG00000154864|ENST00000674853|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5|PIEZO2 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91211.1 NaN 1081 1476 2557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2561 24.442 NaN 155560 35 0 43088 0.327 + 761 ASGGVLGPW 9 38 422.22285687571434 NaN 0 422.2377624511719 PEAK HCD FTMS 0 0 0 2560 3434.68896484375 0.34380266037566354 18 -0.23534774780273438 1 Unmodified _ASGGVLGPW_ ENST00000377294.2_1_6:28219872-28219989:-|nuORF 11.640296217721598 0.23883959125015683 2 GG 2 7 10.969 0 0 1.3021 0 0 158.03952396401752 567.325029849662 725.3645538136795 0 0 0 0 0 0 0 0 0 + GG 1.3021 + + 23 + NaN NaN 103534.2 NaN 1082 1477 2560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2562 24.446 NaN 71349 35 0 24214 0.261 -1 0 27 493.74866897899705 985.4827850247941 2 493.7485656738281 MULTI HCD FTMS 0 0 0 2560 20474.4453125 0.6987124738139022 -6 0.06086158752441406 2 NaN NaN 2 A 1 -1 6.9897 0 0 0.70927 0 0 730.3976847824098 181.0259188287719 911.4236036111816 0 0 0 0 0 0 0 0 0 A 0.70927 - 2 + NaN NaN 95057.3 NaN 1083 1477 2560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2563 24.45 NaN 77366 35 0 11856 0.261 + -1 PFSKERMHVE 10 30 425.8765978859228 1274.6079642579684 3 425.8768005371094 MULTI HCD FTMS 0 0 0 2560 20088.470703125 0.6088745115380904 -13 0.12503623962402344 3 Oxidation (M) _PFSKERM(Oxidation (M))HVE_ REV__ENSG00000198482|ENST00000359798|ZNF808;REV__nc|ENSG00000198482|Q8N4W9-2|ZNF808 3.072263186857199 0.4590417271953214 2 PE 2 -1 25.969 0 0 2.0374 0 0 1030.4856005187169 0 1030.4856005187169 0 24.710040265111566 0 0 0 0.5 0 0 0 PE 2.0374 - 3 NaN NaN 107835.4 NaN 1084 1477 2560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2565 24.455 NaN 219120 35 0 24985 0.411 + 28682 TSETPQPPR 9 61 506.75659515389935 1011.4986373745987 2 506.7563781738281 MULTI HCD FTMS 0 0 0 2564 95737.9765625 0.3860556488962576 -31 0.32092857360839844 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 69.10491478415734 0.009377850133389008 2 {[MG]|[TS]}ET 4 5 33.773 0 0 3.3389 0 0 0 590.3054764876264 590.3054764876264 20.27819381628923 0 0 0 0 1.5 0 1.1861818737241734 0 + {[MG]|[TS]}ET 3.3389 + + 78 NaN NaN 156806.5 NaN 1085 1478 2564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2567 24.463 NaN 87565 35 0 8709.8 0.327 + 4073 ESGPSIVHR 9 37 491.2591052378132 980.5036575424264 2 491.25909423828125 MULTI HCD FTMS 0 0 0 2566 47670.69921875 0.01834501817350065 71 -0.7975635528564453 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 29.081581746732265 0.1154664336125038 2 S{I|L}VHR 5 4 39.213 0 0 3.9993 0 0 370.1489344973076 0 370.1489344973076 0 28.75569708000178 0 0 0 0.6421590589602533 0 0 0.5 + S{I|L}VHR 3.9993 + + 25 + NaN NaN 97535 NaN 1086 1479 2566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2568 24.468 NaN 152800 35 0 15148 0.261 + 8475 HADPHSIDTL 10 34 553.2671728507465 1104.519792768293 2 553.26708984375 MULTI HCD FTMS 0 0 0 2566 38353.328125 0.007510787987581153 -15 0.14656829833984375 2 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 13.90604991867851 0.3810395177745597 2 {M(Oxidation (M))|F}{[CP]|[EA]}T{I|L} 5 -1 32.703 0 0 2.9608 0 0 525.2417141540864 0 525.2417141540864 0 11.249387366082999 0 0 0 0.4247425010840047 0 0.9247425010840047 0 {M(Oxidation (M))|F}{[CP]|[EA]}T{I|L} 2.9608 - 26 NaN NaN 101303.3 NaN 1087 1479 2566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2570 24.473 NaN 98035 35 0 8867.4 0.327 + 8951 HPDRSQPAF 9 32 527.7568172604593 1053.4990815877186 2 527.7567138671875 MULTI HCD FTMS 0 0 0 2569 42530.15234375 0.33938626233190317 20 -0.25259971618652344 1 Unmodified _HPDRSQPAF_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 17.11289562659939 0.2125047172822487 2 HPV 3 7 30.177 0 0 2.8645 0 0 0 717.3090914361936 717.3090914361936 26.682437647924218 0 0 0 0 0.8494850021680094 0 0 0 HPV 2.8645 - 15 + NaN NaN 96552.8 NaN 1088 1480 2569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2571 24.478 NaN 38328 35 0 6785.9 0.261 + 5369 FGIWMDLSRT 10 22 613.3045440967736 1224.5945352603471 2 613.3045654296875 MULTI HCD FTMS 0 0 0 2569 18431.5390625 1 0 0 2 Unmodified _FGIWMDLSRT_ REV__ENST00000525846.6_1_16:18443548-18445649:-|nuORF;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__ENST00000534164.5_1_16:15012355-15014181:+|nuORF 1.1933415558491238 0.46898715808974617 2 AS 2 -1 10.969 0 0 0.89573 0 0 405.14447530116587 658.3504732721311 1063.494948573297 0 0 0 0 0 0 0 0 0 AS 0.89573 - 17 + NaN NaN 90166.7 NaN 1089 1480 2569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2572 24.481 NaN 21234 35 0 5432.2 0.261 + 25800 SLMYRKDFII 10 14 643.3523333775474 1284.6901138218948 2 643.3521728515625 MULTI HCD FTMS 0 0 0 2569 9690.6171875 0.5810243677712962 5 -0.055755615234375 3 Unmodified _SLMYRKDFII_ ENSG00000164164|ENST00000447906|OTUD4;ENST00000455611.6_1_4:146049153-146095893:-|nuORF;nc|ENSG00000164164|Q01804-3|OTUD4;nc|ENSG00000164164|Q01804-4|OTUD4;nc|ENSG00000164164|Q01804-5|OTUD4 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105873.9 NaN 1090 1480 2569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2573 24.484 NaN 30664 35 0 7796.7 0.263 + 11971 KFQTAVTEP 9 19 510.77165857454975 1019.5287642158995 2 510.7717590332031 MULTI HCD FTMS 0 0 0 2569 16152.6943359375 0.34516055752695785 -12 0.11841011047363281 4 Unmodified _KFQTAVTEP_ REV__ENSG00000197879|ENST00000648651|MYO1C;REV__nc|ENSG00000197879|O00159-2|MYO1C;REV__nc|ENSG00000197879|O00159-3|MYO1C 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97644.1 NaN 1091 1480 2569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2575 24.49 NaN 72444 35 0 9234.5 0.327 -1 VPTEENEM 8 37 482.70007759234625 963.3856022514925 2 482.6999816894531 MULTI HCD FTMS 0 0 0 2574 43470.59375 0.7472371427180539 -2 0.026567459106445312 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 37.97399986684836 0.256956040331741 2 ENE{M(Oxidation (M))|F} 4 -1 45.305 0 0 4.7027 0 0 426.21104628730626 0 426.21104628730626 0 36.35274404843592 0 0 0 1.2614393726401687 0 0.4247425010840047 0 ENE{M(Oxidation (M))|F} 4.7027 + + 24 NaN NaN 90499.1 NaN 1092 1481 2574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2577 24.498 NaN 45487 35 0 5574.7 0.327 -1 FVNDDRHVM 9 31 574.7612061633115 1147.507859393423 2 574.7611083984375 MULTI HCD FTMS 0 0 0 2576 35467.30859375 0.9602225395597623 -5 0.05577278137207031 1 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 24.990960013464015 0.14443998892849796 2 V{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.0008 0 0 883.3906117169937 0 883.3906117169937 0 13.38168156311241 0 0 0 0.3494850021680094 0 0 0 V{M(Oxidation (M))|F} 2.0008 + + 36 NaN NaN 93288 NaN 1093 1482 2576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2578 24.502 NaN 33322 35 0 7206 0.261 + 32549 WHYWDDCD 8 19 570.1979238808037 NaN 0 570.1982421875 PEAK HCD FTMS 0 0 0 2576 4031.984619140625 0.5055467462888328 -3 0.03424072265625 2 Unmodified _WHYWDDCD_ REV__ENSG00000165632|ENST00000344293|TAF3 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84833.4 NaN 1094 1482 2576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2579 24.505 NaN 32513 35 0 11521 0.261 -1 SQKQCRPR 8 16 530.2782965353955 NaN 0 530.3860473632812 PEAK HCD FTMS 0 0 0 2576 4347.24560546875 1 0 0 3 Carbamidomethyl (C) _SQKQC(Carbamidomethyl (C))RPR_ ENST00000584516.5_1_17:73584952-73585240:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96160.7 NaN 1095 1482 2576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2581 24.511 NaN 36532 35 0 5507.4 0.411 -1 DWLIYDEM 8 32 550.7323299681583 NaN 0 550.7317504882812 PEAK HCD FTMS 0 0 0 2580 9272.7041015625 0.4944402317887519 -10 0.11231040954589844 1 Oxidation (M) _DWLIYDEM(Oxidation (M))_ ENSG00000047188|ENST00000161863|YTHDC2 2.302733041254933 0.38822285293237185 2 E 1 -1 5.4846 0 0 0.49884 0 0 165.04854750898738 802.3411959283811 967.3897434373685 0 0 0 0 0 0 0 0 0 E 0.49884 + + 1 + NaN NaN 89151.2 NaN 1096 1483 2580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2583 24.519 NaN 294750 35 0 27973 0.327 -1 RYMPPAHRNF 10 54 435.54871109776207 1303.6243038934863 3 435.5484619140625 MULTI HCD FTMS 0 0 0 2582 128859.328125 0.7413985332763732 9 -0.1221771240234375 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 19.625955294349634 0.3275374527965692 2 PA 2 -1 15.217 0 0 1.1672 0 0 563.2536321921484 569.2588029824168 1132.5124351745653 0 0 0 0 0 0.4247425010840047 0 0 0 PA 1.1672 + + 23 + NaN NaN 125654.1 NaN 1097 1484 2582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2584 24.523 NaN 62230 35 0 10595 0.261 -1 MMEILRYTHQF 11 25 500.9044130879156 1499.6914098639468 3 500.9046630859375 MULTI HCD FTMS 0 0 0 2582 7939.8662109375 0.4471835502216551 -1 0.008230209350585938 2 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))EILRYTHQF_ ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93891.4 NaN 1098 1484 2582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2587 24.536 NaN 248940 35 0 32495 0.327 + 27801 TAVKNDYEM 9 43 543.7422502191591 1085.4699475051182 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2586 172598.578125 0.8864559957448734 -1 0.0073986053466796875 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 90.13494162714682 0.004522430935000059 2 [TA]VKNDYE{M(Oxidation (M))|F} 9 0 + 89.688 0 0 8.2626 8.2626 97.69 0 0 0 84.20364358414254 16.478174818886373 16.478174818886373 89.68819364918282 0 2.548455006504028 1.5228787452803376 1.1861818737241734 0 + + [TA]VKNDYE{M(Oxidation (M))|F} 8.2626 + + 43 + NaN NaN 119260.4 NaN 1099 1486 2586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2588 24.541 NaN 66501 35 0 8971.7 0.261 + 16376 LSESKPQGQ 9 25 487.2510970885921 972.4876412439842 2 487.2512512207031 MULTI HCD FTMS 0 0 0 2586 14598.033203125 0.460179947016025 7 -0.10478591918945312 2 Unmodified _LSESKPQGQ_ nc|ENSG00000236882|Q52M75|LINC01554 6.723162845929126 0.3000504726104499 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90772.7 NaN 1100 1486 2586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2589 24.544 NaN 36900 35 0 11725 0.261 -1 MGPRRYMGL 9 22 548.7729826363662 1095.5314123395324 2 548.7726440429688 MULTI HCD FTMS 0 0 0 2586 10584.27734375 0.7252940745823652 -8 0.08137321472167969 3 Oxidation (M) _M(Oxidation (M))GPRRYMGL_ ENSG00000204694|ENST00000377149|OR11A1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86534.6 NaN 1101 1486 2586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2591 24.55 NaN 70923 35 0 9132.2 0.411 + 8590 HAVQTVETM 9 38 516.2452358194954 1030.4759187057907 2 516.2453002929688 MULTI HCD FTMS 0 0 0 2590 26038.439453125 0.4919832706924103 -9 0.09459114074707031 1 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 45.69961567697781 0.039180348357221985 2 [HA]VQTVET{M(Oxidation (M))|F} 9 0 + 56.393 0 0 5.4725 5.4725 87.667 0 0 0 4.762036441594191 56.39252201045579 4.762036441594191 9.208187539523749 0 1.274227503252014 0 0.3807196863200844 0 + + [HA]VQTVET{M(Oxidation (M))|F};[HA]V[AG]TVET{M(Oxidation (M))|F} 5.4725;4.5789 +;- + 53 NaN NaN 119276 NaN 1102 1487 2590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2593 24.558 NaN 121220 35 0 13187 0.327 -1 TVYMNVMT 8 37 487.72002729255064 973.4255016519013 2 487.7198486328125 MULTI HCD FTMS 0 0 0 2592 21654.55859375 0.27847249522706874 -8 0.08460807800292969 1 Oxidation (M) _TVYM(Oxidation (M))NVMT_ ENSG00000073711|ENST00000264977|PPP2R3A 11.640296217721598 0.50814828952472 2 TA 2 -1 19.464 0 0 1.9995 0 0 0 798.3160373650893 798.3160373650893 -1.2371250542002343 0 -1.2371250542002343 0 0 0 0 0 0 TA 1.9995 - 9 + NaN NaN 106230.9 NaN 1103 1488 2592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2594 24.562 NaN 47696 35 0 9336.3 0.261 + 12141 KKKKKKKKKSF 11 26 469.3284840754275 NaN 0 469.32891845703125 PEAK HCD FTMS 0 0 0 2592 11445.833984375 0.6309728522840338 70 -0.8009529113769531 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91688.1 NaN 1104 1488 2592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2595 24.566 NaN 28761 35 0 5493.5 0.261 + -1 RQCFTQCK 8 18 564.2584815259476 1126.502410118695 2 564.7593383789062 MULTI HCD FTMS 0 0 0 2592 6000.1796875 0.33959464314336724 -6 0.060314178466796875 3 2 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))FTQC(Carbamidomethyl (C))K_ REV__ENSG00000188039|ENST00000524140|NWD1;REV__nc|ENSG00000188039|Q149M9-2|NWD1;REV__nc|ENSG00000188039|Q149M9|NWD1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83325.1 NaN 1105 1488 2592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2596 24.569 NaN 12246 35 0 4369.6 0.261 + 8720 HHARKDADSEV 11 11 632.8049926757812 NaN 0 632.8049926757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _HHARKDADSEV_ REV__nc|ENSG00000125952|P61244-2|MAX 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86661.3 NaN 1106 1488 2592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2598 24.575 NaN 414020 35 0 122570 0.327 + 25127 SAGGPVTVR 9 51 422.2378905135464 842.4612280938928 2 422.23773193359375 MULTI HCD FTMS 0 0 0 2597 306924.3125 0.8208846645101987 1 -0.016742706298828125 1 Unmodified _SAGGPVTVR_ ENST00000378119.8_1_6:24720562-24720727:-|nuORF 84.5221896805406 0.004669506596793478 2 SAGGPVTVR 9 0 + 101.34 0 0 12.029 12.029 95.725 0 0 0 12.175390846596486 12.175390846596486 12.175390846596486 10.72559982972642 0 2.6549471895720984 1.6989700043360187 0 0 + + SAGGPVTVR;SANPVTVR;{[SA]|[TG]}GGPVTVR;{[SA]|[TG]}NPVTVR;SQGPVTVR;{[SA]|[TG]}G[RP]TV[VG];{[QS]|[NT]}GPVTVR;{[QS]|[NT]}[RP]TV[VG] 12.029;10.756;10.584;9.2821;8.65;7.2924;7.2048;3.9133 +;-;+;-;-;-;-;- + 137 + NaN NaN 162505.3 NaN 1107 1489 2597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2599 24.579 NaN 57830 35 0 18035 0.261 + 28041 TGDKPNQNL 9 21 493.74866897899705 985.4827850247941 2 493.7485046386719 MULTI HCD FTMS 0 0 0 2597 15320.8056640625 0.5228389762443854 6 -0.10267257690429688 2 Unmodified _TGDKPNQNL_ REV__ENSG00000123607|ENST00000243344|TTC21B 4.3292370932331545 0.3181982124262546 2 A 1 -1 4.6041 0 0 0.46719 0 0 730.3974406417848 181.0246523492797 911.4220929910645 0 0 0 0 0 0 0 0 0 A 0.46719 - 1 + NaN NaN 107764.4 NaN 1108 1489 2597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2600 24.582 NaN 94540 35 0 15176 0.261 -1 0 29 579.7229223380292 1157.4312917428583 2 579.7230224609375 MULTI HCD FTMS 0 0 0 2597 23497.392578125 0.3449353954226306 -4 0.045440673828125 3 NaN NaN 2 E 1 -1 5.4846 0 0 0.47386 0 0 86.06613168602082 939.2915208611463 1025.3576525471672 0 0 0 0 0 0 0 0 0 E 0.47386 - 1 + NaN NaN 123563.9 NaN 1109 1489 2597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2601 24.586 NaN 41412 35 0 10452 0.261 + -1 VMCVKECYS 9 28 559.736909007738 1117.4592650822758 2 559.7371826171875 MULTI HCD FTMS 0 0 0 2597 7243.09423828125 0.6962403970326374 -2 0.024824142456054688 4 Carbamidomethyl (C) _VMC(Carbamidomethyl (C))VKECYS_ REV__ENST00000460796.1_1_3:156893176-156957565:+|nuORF;REV__ENST00000475102.1_1_3:156948072-156957565:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105359.2 NaN 1110 1489 2597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2603 24.591 NaN 302700 35 0 44488 0.327 + 28683 TSETPQPPR 9 45 506.75659515389935 1011.4986373745987 2 506.7565612792969 MULTI HCD FTMS 0 0 0 2602 136121.3125 0.5488981855752051 -19 0.2102794647216797 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 62.57269311338072 0.013982455292112035 2 {[MG]|[TS]}ET 4 5 35.974 0 0 3.5565 0 0 0 590.3053124565042 590.3053124565042 15.00508444608478 0 0 0 0 1.5 0 1.2302046884880937 0 + {[MG]|[TS]}ET 3.5565 + + 90 NaN NaN 135119 NaN 1111 1490 2602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2605 24.598 NaN 4725900 35 0 422210 0.327 + 9544 HRDYETATL 9 105 553.2671728507465 1104.519792768293 2 553.267822265625 MULTI HCD FTMS 0 0 0 2604 3085297.75 0.6041983424042463 -3 0.04080963134765625 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 47.748688679222035 0.03472022231463587 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDHEAT{I|L} 10 5 + 87.393 0 0 7.9123 7.9123 88.492 0 0 0 2.7865969499212184 5.384524452577196 2.7865969499212184 2.7865969499212184 0 2.5986198691406326 0 2.9247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDHEAT{I|L};[VP]HSDHEAT{I|L};HPVSDHEAT{I|L};[{I|L}T]AEEEEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDEHAT{I|L};[VP]HSDEHAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDEAHT{I|L};[TA]EHPHEAT{I|L};[VP]HSDEAHT{I|L};[TA]{I|L}EEEEAT{I|L} 7.9123;7.66;7.4248;7.1224;7.0593;6.807;6.3225;6.2869;6.0702;5.8349 -;-;-;-;-;-;-;-;-;- 16553 NaN NaN 812273.2 NaN 1112 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2606 24.603 NaN 67018 35 0 5612.2 0.263 + -1 PFSKERMHVE 10 32 425.8765978859228 1274.6079642579684 3 425.8763732910156 MULTI HCD FTMS 0 0 0 2604 28271.953125 0.8569129976894811 1 -0.026182174682617188 2 Oxidation (M) _PFSKERM(Oxidation (M))HVE_ REV__ENSG00000198482|ENST00000359798|ZNF808;REV__nc|ENSG00000198482|Q8N4W9-2|ZNF808 1.4551175022131473 0.4676015363898197 2 PE 2 -1 25.969 0 0 2.0374 0 0 1030.483627379065 0 1030.483627379065 0 22.870156338638594 0 0 0 0.5 0 0 0 PE 2.0374 - 3 NaN NaN 112478.2 NaN 1113 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2607 24.606 NaN 96948 35 0 13271 0.261 + 19595 NTIGKEEIQQR 11 33 439.2369853681039 1314.6891267045116 3 439.2367248535156 MULTI HCD FTMS 0 0 0 2604 29559.3359375 0.910159187860583 -1 0.0074787139892578125 3 Unmodified _NTIGKEEIQQR_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 1.7824221048909905 0.41110356865096537 2 {[QS]|[NT]}{I|L} 3 8 14.705 0 0 1.1185 0 0 0 983.4910044045868 983.4910044045868 14.704999916446797 0 0 0 0 0.4247425010840047 0 0 0 + {[QS]|[NT]}{I|L} 1.1185 + + 3 + NaN NaN 103754.9 NaN 1114 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2608 24.61 NaN 44169 35 0 6810.8 0.261 -1 HLPLMPMSP 9 19 527.7568172604593 1053.4990815877186 2 527.7566528320312 MULTI HCD FTMS 0 0 0 2604 20723.28125 0.165369663147324 31 -0.36572837829589844 4 2 Oxidation (M) _HLPLM(Oxidation (M))PM(Oxidation (M))SP_ ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1 2.0597508629832335 0.3354026079994024 2 HY 2 -1 20.969 0 0 1.9904 0 0 0 750.3714069551432 750.3714069551432 20.969100130080562 0 0 0 0 0 0 0 0 HY 1.9904 - 1 + NaN NaN 94363.9 NaN 1115 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2609 24.613 NaN 47553 35 0 4474.3 0.261 + 19670 NVTKDHIM 8 32 479.24458931249217 NaN 0 479.2445983886719 PEAK HCD FTMS 0 0 0 2604 7002.33154296875 0.5846542584787205 -6 0.06966209411621094 5 Unmodified _NVTKDHIM_ ENSG00000205937|ENST00000320225|RNPS1;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-2|RNPS1;nc|ENSG00000205937|Q15287-3|RNPS1 4.3292370932331545 0.38822285293237185 2 AE 2 8 10.969 0 0 1.1468 0 0 102.10922203882497 651.2660006158811 753.3752226547061 0 0 0 0 0 0 0 0 0 AE 1.1468 - 4 + NaN NaN 96622.1 NaN 1116 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2610 24.616 NaN 20192 35 0 5026 0.261 + -1 WAWMLCHL 8 10 558.7578309050846 NaN 0 558.7578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _WAWMLC(Carbamidomethyl (C))HL_ REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81464 NaN 1117 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2611 24.619 NaN 37176 35 0 9907.1 0.261 + -1 LYHMTLSKL 9 27 561.3065996437853 1120.5986463543704 2 561.3062133789062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _LYHM(Oxidation (M))TLSKL_ REV__ENSG00000203995|ENST00000371528|ZYG11A 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104240.8 NaN 1118 1491 2604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2613 24.625 NaN 68964 35 0 9563.1 0.327 + 4074 ESGPSIVHR 9 35 491.2591052378132 980.5036575424264 2 491.2591247558594 MULTI HCD FTMS 0 0 0 2612 28568.7578125 0.010994056933373292 84 -0.9564781188964844 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 9.38312468134398 0.279288223203164 2 {I|L}VHR 4 5 25.037 0 0 2.5535 0 0 457.1789637941826 0 457.1789637941826 0 21.057743964882718 0 0 0 0 0 0 0 + {I|L}VHR 2.5535 + + 11 + NaN NaN 108524.9 NaN 1119 1492 2612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2614 24.629 NaN 55124 35 0 4952.6 0.261 + -1 GDEPGTLEM 9 34 482.70007759234625 963.3856022514925 2 482.6999206542969 MULTI HCD FTMS 0 0 0 2612 21777.58203125 0.37434543144097915 9 -0.10874176025390625 2 Oxidation (M) _GDEPGTLEM(Oxidation (M))_ REV__ENSG00000127663|ENST00000159111|KDM4B;REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF;REV__nc|ENSG00000127663|O94953|KDM4B 7.289230182591677 0.29575926068275815 2 NE{M(Oxidation (M))|F} 3 -1 31.198 0 0 3.2384 0 0 555.25395400215 0 555.25395400215 0 20.74031267727719 0 0 0 0.5 0 0 0 NE{M(Oxidation (M))|F} 3.2384 - 23 NaN NaN 106074 NaN 1120 1492 2612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2615 24.632 NaN 246170 35 0 35894 0.261 + 22178 QLDQSTTIANI 11 40 401.8778842771242 NaN 0 401.877685546875 PEAK HCD FTMS 0 0 0 2612 24319.1328125 0.24210497661469804 714 -12.225130081176758 3 Unmodified _QLDQSTTIANI_ REV__ENSG00000075426|ENST00000264716|FOSL2;REV__FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant;REV__FOSL2|p.P201Qfs*31|1|0.26|ENSG00000075426|chr2:28412032-28412033|-/CAGTGTGCAAGATTAGCCCCGAGGAGCGCCGATCG|frameshift_variant;REV__FOSL2|p.P202Afs*52|1|0.2|ENSG00000075426|chr2:28412069-28412082|CCCCAGCCCCTGGG/-|frameshift_variant;REV__FOSL2|p.R199Afs*22|1|0.32|ENSG00000075426|chr2:28412057-28412058|-/GC|frameshift_variant;REV__nc|ENSG00000075426|P15408-2|FOSL2;REV__nc|ENSG00000075426|P15408-3|FOSL2 4.897010918128616 0.3282287337590871 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.68408 0 0 137.46010368369917 514.2045124264188 651.664616110118 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.68408 - 8 + NaN NaN 133516.1 NaN 1121 1492 2612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2616 24.636 NaN 41768 35 0 9766.6 0.261 + -1 SCLFDTAAE 9 17 499.71040268033215 NaN 0 499.71038818359375 PEAK HCD FTMS 0 0 0 2612 10833.4970703125 1 0 0 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SCLFDTAAE_ REV__ENST00000261951.8_1_5:180001757-180001811:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110673.3 NaN 1122 1492 2612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2618 24.641 NaN 55476 35 0 5662.4 0.327 + 12381 KPEGKDYAL 9 33 510.77165857454975 1019.5287642158995 2 510.77166748046875 MULTI HCD FTMS 0 0 0 2617 32444.95703125 0.6933034963045668 1 -0.022966384887695312 1 Unmodified _KPEGKDYAL_ ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 11.494710602746466 0.2610445893512368 2 KP 2 7 25.217 0 0 2.4734 0 0 0 791.3557222955686 791.3557222955686 18.226825097560422 0 0 0 0 0.4247425010840047 0 0 0 + KP 2.4734 + + 3 + NaN NaN 93838.6 NaN 1123 1493 2617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2619 24.645 NaN 37610 35 0 4658.2 0.261 -1 FVNDDRHVM 9 30 574.7612061633115 1147.507859393423 2 574.7611694335938 MULTI HCD FTMS 0 0 0 2617 28806.546875 0.7798927150940956 6 -0.07509040832519531 2 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 11.494710602746466 0.2610445893512368 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8274 0 0 883.3891468732437 0 883.3891468732437 0 17.870156338638594 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.8274 + + 31 NaN NaN 86485.6 NaN 1124 1493 2617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2620 24.649 NaN 48874 35 0 5726.3 0.262 + -1 AGFFMAGSM 9 26 475.69207829740594 NaN 0 475.6919860839844 PEAK HCD FTMS 0 0 0 2617 23546.111328125 0.6445384183232775 -2 0.042522430419921875 3 2 Oxidation (M) _AGFFM(Oxidation (M))AGSM(Oxidation (M))_ REV__tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 7.910154910731844 0.25691533546754686 2 S 1 -1 16.99 0 0 1.7896 0 0 697.2922701428604 162.02277551822502 859.3150456610854 0 0 0 0 0 1 0 0 0 S 1.7896 + + 2 + NaN NaN 102192.2 NaN 1125 1493 2617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2621 24.652 NaN 35966 35 0 5336.6 0.261 + -1 MERCVDKM 8 25 550.7323299681583 NaN 0 550.7326049804688 PEAK HCD FTMS 0 0 0 2617 18753.943359375 1 0 0 4 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))ERC(Carbamidomethyl (C))VDKM(Oxidation (M))_ REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95422.1 NaN 1126 1493 2617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2622 24.655 NaN 26950 35 0 3877.7 0.261 + 17795 MFFKFSRM 8 19 547.2678863864013 NaN 0 547.2680053710938 PEAK HCD FTMS 0 0 0 2617 4579.37939453125 0.5056019322331813 1 -0.022966384887695312 5 Unmodified _MFFKFSRM_ NLRP11|p.P1016S|1|0.2|ENSG00000179873|chr19:55785681-55785681|G/A|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84072.6 NaN 1127 1493 2617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2623 24.659 NaN 43863 35 0 10115 0.261 + 28220 TLDYYVKG 8 27 479.74664306640625 NaN 0 479.74664306640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _TLDYYVKG_ REV__ENSG00000105953|ENST00000222673|OGDH;REV__nc|ENSG00000105953|Q02218-2|OGDH;REV__OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90141 NaN 1128 1493 2617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2625 24.664 NaN 218390 35 0 68177 0.327 + 22032 QGDMIGPEVA 10 37 508.739498595463 1015.464444257726 2 508.7396240234375 MULTI HCD FTMS 0 0 0 2624 80433.1875 0.8111662037560837 -18 0.23235130310058594 1 Unmodified _QGDMIGPEVA_ ENST00000357710.8_1_14:73686172-73686376:+|nuORF 13.042465956692817 0.38911719078024076 2 {[QG]|[NA]}D 3 7 38.429 0 0 3.7843 0 0 0 712.3347805216509 712.3347805216509 24.47621246364342 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0.4247425010840047 + {[QG]|[NA]}D 3.7843 + + 8 NaN NaN 122199.1 NaN 1129 1494 2624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2626 24.668 NaN 124340 35 0 18278 0.261 + 3076 EAGPSIVHR 9 37 483.26186626032825 964.5091795874565 2 483.2613830566406 MULTI HCD FTMS 0 0 0 2624 44296.57421875 0.05928773324914627 -18 0.23235130310058594 2 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 21.536976647645854 0.1742816388551942 2 {[CP]|[EA]}[PG]S{I|L}VHR 9 0 + 42.369 0 0 4.3928 4.3928 90.395 0 0 0 24.488474775526186 16.478174818886373 16.478174818886373 42.36880000633434 0 0.3494850021680094 0 0 0 + + {[CP]|[EA]}[PG]S{I|L}VHR 4.3928 + + 45 + NaN NaN 103922.2 NaN 1130 1494 2624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2627 24.672 NaN 18390 35 0 4709.9 0.261 -1 GCMLQWYW 8 14 572.2408049777514 NaN 0 572.2410278320312 PEAK HCD FTMS 0 0 0 2624 8725.830078125 0.6389751797089759 -3 0.06548881530761719 3 Carbamidomethyl (C) _GC(Carbamidomethyl (C))MLQWYW_ ENST00000358746.6_1_5:94852111-94852410:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98201.3 NaN 1131 1494 2624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2629 24.677 NaN 203530 35 0 26021 0.327 + 27802 TAVKNDYEM 9 36 543.7422502191591 1085.4699475051182 2 543.7423706054688 MULTI HCD FTMS 0 0 0 2628 148156.90625 0.7609250277902521 8 -0.07387161254882812 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 55.23464941255904 0.024247875903973527 2 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 75.028 0 0 6.912 6.912 95.246 0 0 0 61.83992802389298 14.973024840566467 14.973024840566467 75.0275156501371 0 2.6549471895720984 0 1.2614393726401687 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 6.912 + + 63 + NaN NaN 136254 NaN 1132 1495 2628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2630 24.681 NaN 87487 35 0 11572 0.261 -1 HAVQTVETM 9 32 516.2452358194954 1030.4759187057907 2 516.2451171875 MULTI HCD FTMS 0 0 0 2628 21895.5625 0.41370568584928225 -1 0.01296234130859375 2 Oxidation (M) _HAVQTVETM(Oxidation (M))_ ENSG00000152147|ENST00000281950|GEMIN6 20.41453444215458 0.18397929046831515 2 VET{M(Oxidation (M))|F} 4 -1 38.443 0 0 3.7306 0 0 536.2659779279312 0 536.2659779279312 0 38.44335023848103 0 0 0 1 0 0 0 VET{M(Oxidation (M))|F} 3.7306 + + 11 NaN NaN 106754.1 NaN 1133 1495 2628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2632 24.686 NaN 273680 35 0 42124 0.327 + 27868 TDSKSYHH 8 44 487.72002729255064 973.4255016519013 2 487.7201232910156 MULTI HCD FTMS 0 0 0 2631 77761.9296875 1 0 0 1 Unmodified _TDSKSYHH_ REV__ENSG00000059378|ENST00000263549|PARP12 12.531546534597751 0.5015908124873912 2 TAE 3 -1 29.737 0 0 3.0549 0 0 0 669.2747445860474 669.2747445860474 10.924778212679485 0 0 0 0 0 0 0.805462187404089 0 TAE 3.0549 - 23 + NaN NaN 132615.7 NaN 1134 1496 2631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2633 24.691 NaN 47450 35 0 4766.5 0.261 -1 FPVTMTEAIC 10 26 564.2584815259476 1126.502410118695 2 564.2579345703125 MULTI HCD FTMS 0 0 0 2631 22600.98046875 0.7580610092363059 2 -0.020090103149414062 2 Oxidation (M) _FPVTM(Oxidation (M))TEAIC_ PRICKLE2|p.G127E|1|0.09|ENSG00000163637|chr3:64159956-64159956|C/T|missense_variant 6.2057823575117 0.44245551207394906 2 HPV 3 -1 31.198 0 0 2.7694 0 0 0 790.2956026666624 790.2956026666624 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.7694 - 4 + NaN NaN 97400.2 NaN 1135 1496 2631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2634 24.694 NaN 52291 35 0 6489.3 0.262 + 12142 KKKKKKKKKSF 11 20 469.32865051713134 NaN 0 469.328857421875 PEAK HCD FTMS 0 0 0 2631 11355.7373046875 0.6036927909737706 -2 0.022609710693359375 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119937.8 NaN 1136 1496 2631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2636 24.699 NaN 132970 35 0 30068 0.327 + 25128 SAGGPVTVR 9 35 422.2378905135464 842.4612280938928 2 422.23773193359375 MULTI HCD FTMS 0 0 0 2635 98560.3359375 0.263604625000397 9 -0.07617759704589844 1 Unmodified _SAGGPVTVR_ ENST00000378119.8_1_6:24720562-24720727:-|nuORF 34.93206674587334 0.08860942999206235 2 {[SA]|[TG]}GG[VP]TVR 9 0 + 55.34 0 0 6.5688 6.5688 90.651 0 0 0 40.73576872189598 6.355377958852699 6.355377958852699 10.72559982972642 0 1.4247425010840047 1.6989700043360187 0 0 + + {[SA]|[TG]}GG[VP]TVR;{[SA]|[TG]}N[VP]TVR 6.5688;5.2957 +;- + 48 + NaN NaN 115256.7 NaN 1137 1497 2635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2638 24.706 NaN 136860 35 0 21334 0.327 -1 0 35 579.7229223380292 1157.4312917428583 2 579.7230224609375 MULTI HCD FTMS 0 0 0 2637 51340.54296875 0.7536653452615321 5 -0.04413414001464844 1 NaN NaN 2 G 1 -1 2.7642 0 0 0.23882 0 0 644.2505188930521 453.12986169986567 1097.3803805929178 0 0 0 0 0 0 0 0 0 G 0.23882 - 1 + NaN NaN 101099.4 NaN 1138 1498 2637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2639 24.711 NaN 64015 35 0 19761 0.261 + -1 VLLEWFVM 8 14 526.7778756213738 1051.5411983095476 2 526.7684936523438 MULTI HCD FTMS 0 0 0 2637 15788.61328125 0.7735909363644976 24 -0.2575397491455078 2 Oxidation (M) _VLLEWFVM(Oxidation (M))_ REV__ENSG00000141497|ENST00000433935|ZMYND15;REV__ENST00000571782.1_1_17:4647099-4647876:+|nuORF;REV__nc|ENSG00000141497|Q9H091-2|ZMYND15;REV__nc|ENSG00000141497|Q9H091-3|ZMYND15 0.7936320650641473 0.540814922690045 2 V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 10.458 0 0 0.9945 0 0 640.3657660359132 0 640.3657660359132 0 0 0 0 0 0 0 0 0 V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.9945 - 4 + NaN NaN 110568 NaN 1139 1498 2637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2641 24.716 NaN 5439300 35 0 457080 0.327 + 9545 HRDYETATL 9 108 553.2671728507465 1104.519792768293 2 553.267822265625 MULTI HCD FTMS 0 0 0 2640 3816902.75 0.7474696128333834 5 -0.042507171630859375 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 53.832793166522166 0.026208976789938845 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDHEAT{I|L} 10 5 + 90.659 0 0 8.208 8.208 89.558 0 0 0 4.370221870873706 9.160886978093728 4.370221870873706 4.370221870873706 0 2.5986198691406326 0 2.774227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDHEAT{I|L};[VP]HSDHEAT{I|L};[{I|L}T]AEEEEAT{I|L};HPVSDHEAT{I|L};[TA]EHPHEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDEHAT{I|L};[TA]EPHHEAT{I|L};[VP]HSDEHAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSDEAHT{I|L};[TA]{I|L}EEEEAT{I|L} 8.208;7.8123;7.5209;7.3786;7.2552;6.9619;6.7563;6.5663;6.2216;6.2194 -;-;-;-;-;-;-;-;-;- 17209 NaN NaN 865316.4 NaN 1140 1499 2640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2642 24.72 NaN 422470 35 0 56404 0.261 + 28684 TSETPQPPR 9 63 506.75659515389935 1011.4986373745987 2 506.7565002441406 MULTI HCD FTMS 0 0 0 2640 240692.359375 0.9705724762443257 -10 0.14183425903320312 2 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 69.10491478415734 0.009377850133389008 2 {[MG]|[TS]}ET 4 5 37.224 0 0 3.68 0 0 0 590.3051300072073 590.3051300072073 25.00508444608478 0 0 0 0 1.5 0 1.2302046884880937 0 + {[MG]|[TS]}ET 3.68 + + 135 NaN NaN 152343 NaN 1141 1499 2640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2644 24.726 NaN 281870 35 0 36988 0.411 -1 AYGLMMAT 8 59 437.1959924721019 872.3774320110039 2 437.1957092285156 MULTI HCD FTMS 0 0 0 2643 8982.955078125 0.3452850369374502 6 -0.05001258850097656 1 Oxidation (M) _AYGLMM(Oxidation (M))AT_ ENSG00000110076|ENST00000265459|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2 26.34127834903884 0.3999841173197873 2 AEH 3 -1 28.148 0 0 3.2266 0 0 0 532.2154635065061 532.2154635065061 1.4659125070036083 0 0 0 0 0.6549471895720984 0 0.3807196863200844 0 AEH 3.2266 - 84 + NaN NaN 171401.3 NaN 1142 1500 2643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2646 24.733 NaN 40397 35 0 12470 0.411 -1 MNKSFLVM 8 26 493.24701634821105 984.4794797632221 2 493.7493591308594 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _MNKSFLVM(Oxidation (M))_ tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5729 0 0 819.4338997845097 0 819.4338997845097 0 5.0269751594335315 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5729 + + 5 + NaN NaN 94947.6 NaN 1143 1501 2645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2648 24.741 NaN 42267 35 0 11479 0.327 + -1 VCLTMKKM 8 24 493.24701634821105 984.4794797632221 2 493.74810791015625 MULTI HCD FTMS 0 0 0 2647 8677.7080078125 0.49608329713838456 -5 0.04164314270019531 1 2 Oxidation (M) _VCLTM(Oxidation (M))KKM(Oxidation (M))_ REV__ENST00000504849.5_1_4:39329283-39344012:-|nuORF 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4834 0 0 819.4337624554081 0 819.4337624554081 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4834 + + 3 + NaN NaN 92752.2 NaN 1144 1502 2647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2649 24.745 NaN 47156 35 0 10758 0.261 + 14233 LCARVPFW 8 24 496.26203126915686 990.5095096051137 2 496.2617492675781 MULTI HCD FTMS 0 0 0 2647 3253.587890625 0.2985255676953695 1 -0.009662628173828125 2 Unmodified _LCARVPFW_ ENST00000441399.2_1_X:131352808-131563850:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91048.5 NaN 1145 1502 2647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2651 24.751 NaN 16606 35 0 2121.7 0.411 + -1 LYKCFCQLE 9 21 602.2806888619083 1202.5468247906165 2 602.2807006835938 MULTI HCD FTMS 0 0 0 2650 6467.806640625 0.33204257021588923 -6 0.05130577087402344 1 Carbamidomethyl (C) _LYKC(Carbamidomethyl (C))FCQLE_ REV__ENSG00000160294|ENST00000291688|MCM3AP;REV__ENST00000467026.5_1_21:47655184-47679082:-|nuORF;REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF;REV__ENST00000494755.1_1_21:47676584-47678938:-|nuORF;REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF 2.0597508629832335 0.3354026079994024 2 K 1 -1 4.6041 0 0 0.38286 0 0 902.9581234740134 168.4650057428344 1071.4231292168479 0 0 0 0 0 0 0 0 0 K 0.38286 + + 4 + NaN NaN 93948.1 NaN 1146 1503 2650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2654 24.766 NaN 19649 35 0 6072.5 0.327 + 5033 FDHDRCKVE 9 11 574.7612061633115 1147.507859393423 2 574.7611694335938 MULTI HCD FTMS 0 0 0 2653 12397.7177734375 0.3356490389928591 18 -0.20816421508789062 1 Unmodified _FDHDRCKVE_ REV__CNDP1|p.Q258H|1|0.23|ENSG00000150656|chr18:74571203-74571203|G/T|missense_variant 3.5964929083625545 0.32375295897743744 2 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6962 0 0 883.3924427716812 0 883.3924427716812 0 19.463950151760656 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6962 - 1 NaN NaN 87486.5 NaN 1147 1505 2653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2655 24.77 NaN 25941 35 0 4906.9 0.261 + 5545 FLFRKMWL 8 18 570.8223058049475 1139.630058676695 2 570.8216552734375 MULTI HCD FTMS 0 0 0 2653 5248.34033203125 0.7947695581829661 3 -0.027706146240234375 2 Unmodified _FLFRKMWL_ REV__ENSG00000171487|ENST00000390649|NLRP5 0.6903765706972694 0.5409681170271811 2 N 1 -1 3.9794 0 0 0.34918 0 0 612.3144591667325 410.23972498111567 1022.5541841478482 0 0 0 0 0 0 0 0 0 N 0.34918 - 1 + NaN NaN 90558.7 NaN 1148 1505 2653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2657 24.776 NaN 26197 35 0 5442.1 0.411 -1 PCKHRCMN 8 33 559.7369271350619 NaN 0 559.737060546875 PEAK HCD FTMS 0 0 0 2656 5229.9091796875 0.40761597310116526 4 -0.05136871337890625 1 2 Carbamidomethyl (C),Oxidation (M) _PC(Carbamidomethyl (C))KHRC(Carbamidomethyl (C))M(Oxidation (M))N_ ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-2|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT;nc|ENSG00000168743|Q6UXI9-4|NPNT;nc|ENSG00000168743|Q6UXI9-5|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT 0.6903765706972694 0.38822285293237185 2 V 1 -1 4.6041 0 0 0.41201 0 0 868.4383643025473 146.92966638736564 1015.3680306899129 0 0 0 0 0 0 0 0 0 V 0.41201 - 2 + NaN NaN 91065.3 NaN 1149 1506 2656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2659 24.784 NaN 197710 35 0 59800 0.327 + 22033 QGDMIGPEVA 10 42 508.739498595463 1015.464444257726 2 508.73931884765625 MULTI HCD FTMS 0 0 0 2658 58041.421875 0.5853459412254309 -5 0.04254341125488281 1 Unmodified _QGDMIGPEVA_ ENST00000357710.8_1_14:73686172-73686376:+|nuORF 8.745405648335112 0.42901288225909884 2 {[QG]|[NA]}D 3 7 21.254 0 0 2.0931 0 0 0 712.3350856974322 712.3350856974322 6.989700043360186 0 0 0 0 0.8494850021680094 0 0 0.3807196863200844 + {[QG]|[NA]}D 2.0931 + + 11 NaN NaN 113624.7 NaN 1150 1507 2658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2660 24.788 NaN 68791 35 0 21268 0.261 + 25341 SDQVYRQR 8 14 526.2675509213839 1050.5205489095677 2 526.7783813476562 MULTI HCD FTMS 0 0 0 2658 3769.11669921875 0.6278594129975011 6 -0.08097648620605469 2 Unmodified _SDQVYRQR_ ENSG00000180176|ENST00000352909|TH;ENST00000381168.7_1_11:2187868-2190906:-|nuORF;ENST00000469226.1_1_11:2189094-2189913:-|nuORF;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-5|TH;nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101|TH 2.302733041254933 0.5385759549224092 2 M 1 8 6.9897 0 0 0.66536 0 0 298.128369433112 618.3106754308354 916.4390448639474 0 0 0 0 0 0 0 0 0 M 0.66536 - 2 + NaN NaN 91489.5 NaN 1151 1507 2658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2662 24.794 NaN 1071000 35 0 162280 0.327 + 3077 EAGPSIVHR 9 63 483.26186626032825 964.5091795874565 2 483.26171875 MULTI HCD FTMS 0 0 0 2661 579642.5 0.7758092025392304 -4 0.035076141357421875 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 99.75527289724121 0.004270341300239591 2 EAGPS{I|L}VHR 9 0 + 103.74 0 0 10.756 10.756 97.395 0 0 0 79.09908235842862 22.420051592891625 22.420051592891625 20.188324713653074 0 1.024227503252014 1.0457574905606752 0.6747425010840047 0.5941876774005248 + + EAGPS{I|L}VHR;EQPS{I|L}VHR;[PS]G[{I|L}T][TP]HR;[PG]S[{I|L}T][TP]HR;{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}[TP]HR 10.756;8.663;2.2197;1.8944;1.0945 +;-;-;-;- + 446 + NaN NaN 249492 NaN 1152 1508 2661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2663 24.798 NaN 190300 35 0 27773 0.261 + 10828 ITKSNNRSHF 10 51 401.8778842771242 NaN 0 401.8779602050781 PEAK HCD FTMS 0 0 0 2661 20135.765625 0.2004581784780557 730 -12.945451736450195 2 Unmodified _ITKSNNRSHF_ REV__CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant;REV__ENSG00000173575|ENST00000394196|CHD2;REV__nc|ENSG00000173575|O14647-2|CHD2;REV__nc|ENSG00000173575|O14647-3|CHD2 6.2057823575117 0.3348729994311477 2 {M(Oxidation (M))|F}QGM 4 -1 8.3919 0 0 1.0467 0 0 137.46031740319842 198.07721887760002 335.53753628079846 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QGM 1.0467 - 34 + NaN NaN 111856.4 NaN 1153 1508 2661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2664 24.802 NaN 72057 35 0 9967.6 0.261 + 21892 QDEILAHR 8 37 491.2591052378132 980.5036575424264 2 491.259033203125 MULTI HCD FTMS 0 0 0 2661 18098.806640625 0.0069649269295875465 100 -1.172719955444336 3 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 2.302733041254933 0.5385759549224092 2 V[RH] 3 6 10.458 0 0 1.0666 0 0 570.2649012941827 0 570.2649012941827 0 3.4678748622465623 0 0 0 0 0 0 0 V[RH] 1.0666 - 7 + NaN NaN 94656.5 NaN 1154 1508 2661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2666 24.807 NaN 125800 35 0 16352 0.327 + 27803 TAVKNDYEM 9 39 543.7422502191591 1085.4699475051182 2 543.7422485351562 MULTI HCD FTMS 0 0 0 2665 80250.484375 0.41216169801890734 22 -0.2403411865234375 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 51.41523569358685 0.02959097413485123 2 [TA]VK[DN]YE{M(Oxidation (M))|F} 9 0 + 71.277 0 0 6.5665 6.5665 94.636 0 0 0 64.28720297285992 16.478174818886373 16.478174818886373 71.2769030162201 0 2.1549471895720984 0 1.2614393726401687 0 + + [TA]VK[DN]YE{M(Oxidation (M))|F} 6.5665 + + 40 + NaN NaN 115254.6 NaN 1155 1509 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2667 24.812 NaN 88320 35 0 9612.4 0.261 + 26079 SPGGVYATR 9 29 454.23524214164576 906.4559313500915 2 454.2350769042969 MULTI HCD FTMS 0 0 0 2665 41826.25390625 0.6036771718410001 -5 0.04832267761230469 2 Unmodified _SPGGVYATR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 26.020703789607367 0.13554323117744113 2 SPGGVY 6 3 75.706 0 0 8.3519 0 0 0 343.17417322330317 343.17417322330317 75.70615965204567 0 0 0 0 1.305462187404089 2 0 0 + SPGGVY 8.3519 + + 38 + NaN NaN 93198.9 NaN 1156 1509 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2668 24.815 NaN 63242 35 0 9572.5 0.261 -1 IQHEKETM 8 32 516.2452358194954 1030.4759187057907 2 516.2449951171875 MULTI HCD FTMS 0 0 0 2665 21081.015625 0.39831523065644286 13 -0.1572856903076172 3 Oxidation (M) _IQHEKETM(Oxidation (M))_ ENST00000510337.1_1_5:122971848-122972142:+|nuORF 19.256988751693697 0.45210759540527456 2 ET{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.5127 0 0 635.3373027597547 0 635.3373027597547 0 33.09894379144197 0 0 0 1 0 0 0 ET{M(Oxidation (M))|F} 3.5127 + + 11 NaN NaN 91899.9 NaN 1157 1509 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2669 24.819 NaN 42252 35 0 8564.9 0.261 + 8161 GPLGPDVRH 9 24 474.2555826065541 NaN 0 474.2557067871094 PEAK HCD FTMS 0 0 0 2665 6573.9619140625 0.5393860117929196 1 -0.020120620727539062 4 Unmodified _GPLGPDVRH_ REV__ENST00000445551.1_1_1:47898708-47899005:-|nuORF 1.844237919475145 0.28630992268396543 2 V 1 -1 4.6041 0 0 0.48644 0 0 536.2583748304927 308.14658533267817 844.4049601631709 0 0 0 0 0 0 0 0 0 V 0.48644 + + 1 + NaN NaN 96284.7 NaN 1158 1509 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2670 24.822 NaN 44330 35 0 10352 0.261 -1 GAEDSSMQL 9 34 477.19880073361475 NaN 0 477.229736328125 PEAK HCD FTMS 0 0 0 2665 5483.79638671875 1 0 0 5 Oxidation (M) _GAEDSSM(Oxidation (M))QL_ ENST00000394228.5_1_4:140217487-140223649:-|nuORF;ENST00000539387.5_1_4:140216240-140223649:-|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96209 NaN 1159 1509 2665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2672 24.827 NaN 48536 35 0 6781.5 0.327 + 27955 TEVTGHRW 8 24 493.24701634821105 984.4794797632221 2 493.2459411621094 MULTI HCD FTMS 0 0 0 2671 15881.51953125 0.786744653483912 -3 0.04335975646972656 1 Unmodified _TEVTGHRW_ chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None;ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF;nc|ENSG00000172270|P35613-2|BSG 10.823927491677226 0.514154816617796 2 TV[DP] 4 6 19.693 0 0 2.0003 0 0 554.27153212715 0 554.27153212715 0 19.69273760456403 0 0 0 0.5 0 0 0 TV[DP] 2.0003 - 7 NaN NaN 86330 NaN 1160 1510 2671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2673 24.832 NaN 45612 35 0 9322.9 0.261 + 12143 KKKKKKKKKSF 11 25 469.3284353438654 NaN 0 469.32867431640625 PEAK HCD FTMS 0 0 0 2671 6864.921875 0.3396736162961076 -32 0.37220001220703125 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94072.5 NaN 1161 1510 2671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2674 24.835 NaN 29177 35 0 7400.7 0.261 + -1 RPWPPWEC 8 17 564.2584815259476 1126.502410118695 2 564.2577514648438 MULTI HCD FTMS 0 0 0 2671 6199.01904296875 0.2079217155417449 16 -0.17127037048339844 3 Carbamidomethyl (C) _RPWPPWEC(Carbamidomethyl (C))_ REV__ENST00000394957.7_1_10:73510788-73511004:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90409.2 NaN 1162 1510 2671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2676 24.841 NaN 1932100 35 0 172210 0.327 + 9546 HRDYETATL 9 83 553.2671728507465 1104.519792768293 2 553.2674560546875 MULTI HCD FTMS 0 0 0 2675 1065357 0.20863040964806737 17 -0.1738758087158203 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 47.748688679222035 0.03472022231463587 2 [{I|L}T]AEEEEAT{I|L} 10 6 + 78.962 0 0 7.149 7.149 92.539 0 0 0 4.9405129391846 29.461499616092652 4.9405129391846 14.163413326259118 0 1.1861818737241734 1.154901959985743 2.4916440611282624 0 [{I|L}T]AEEEEAT{I|L};[TA]{I|L}EEEEAT{I|L};{[QN]|[E{I|L}]|[KN]}[TA]EEEAT{I|L};[TA]E{I|L}EEEAT{I|L};{[QN]|[E{I|L}]|[KN]}[TA]H[YG]TT{I|L};[{I|L}T]AEEE[TA]E{I|L};[TA]{I|L}EEE[TA]E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[MG]|[TS]}{[MS]|[{M(Oxidation (M))|F}A]}PH{I|L};[TA]E{I|L}EE[TA]E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[MG]|[TS]}D{[CP]|[EA]}H{I|L} 7.149;5.8667;5.6609;5.6161;3.6999;3.3616;2.0793;1.9761;1.8287;1.7947 -;-;-;-;-;-;-;-;-;- 3966 NaN NaN 374998.7 NaN 1163 1511 2675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2678 24.848 NaN 433790 35 0 56683 0.327 + 28685 TSETPQPPR 9 58 506.75659515389935 1011.4986373745987 2 506.75653076171875 MULTI HCD FTMS 0 0 0 2677 200896.21875 0.8100977571810769 3 -0.038028717041015625 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 60.07390631473393 0.0174780869009295 2 {[MG]|[TS]}ET 4 5 33.729 0 0 3.3345 0 0 0 590.3051045310773 590.3051045310773 15.769921747127498 0 0 0 0 1.5 0 0.8807196863200843 0 + {[MG]|[TS]}ET 3.3345 + + 109 NaN NaN 164864.4 NaN 1164 1512 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2679 24.853 NaN 50874 35 0 18341 0.261 + 31348 VWWLAPNAP 9 18 527.27937637688 NaN 0 527.279296875 PEAK HCD FTMS 0 0 0 2677 6506.427734375 0.5930367791320559 -20 0.2234630584716797 2 Unmodified _VWWLAPNAP_ REV__ENSG00000215009|ENST00000399422|ACSM4 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91397.3 NaN 1165 1512 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2680 24.856 NaN 28146 35 0 6239.4 0.261 + 32565 WINKLLCM 8 15 510.77165857454975 1019.5287642158995 2 510.771240234375 MULTI HCD FTMS 0 0 0 2677 6505.82958984375 0.13902050776815597 20 -0.2190380096435547 3 Unmodified _WINKLLCM_ ENST00000498336.5_1_6:30525121-30529202:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88774.2 NaN 1166 1512 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2681 24.859 NaN 14978 35 0 4582.1 0.261 -1 FCGTIFLMYM 10 15 621.2738037109375 NaN 0 621.2738037109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _FCGTIFLM(Oxidation (M))YM_ ENSG00000277556|ENST00000374779|OR13C5 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88698.5 NaN 1167 1512 2677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2683 24.865 NaN 80174 35 0 7985.7 0.411 -1 TASYLCMI 8 40 487.72002729255064 973.4255016519013 2 487.7194519042969 MULTI HCD FTMS 0 0 0 2682 11382.14453125 0.1463716831229774 17 -0.17435646057128906 1 Carbamidomethyl (C),Oxidation (M) _TASYLC(Carbamidomethyl (C))M(Oxidation (M))I_ ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2 9.347437153973935 0.5250182646323369 2 TAE 3 -1 30.802 0 0 3.1643 0 0 0 669.2738741510374 669.2738741510374 26.822581265925436 0 0 0 0 0 0 0.7614393726401688 0 TAE 3.1643 - 15 + NaN NaN 109551.7 NaN 1168 1513 2682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2685 24.873 NaN 51575 35 0 5667 0.327 + 27956 TEVTGHRW 8 28 493.24701634821105 984.4794797632221 2 493.24603271484375 MULTI HCD FTMS 0 0 0 2684 16080.1640625 0.79658518055673 1 -0.013261795043945312 1 Unmodified _TEVTGHRW_ chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None;ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF;nc|ENSG00000172270|P35613-2|BSG 6.723162845929126 0.5320176132289695 2 TV[DP] 4 6 21.198 0 0 2.1532 0 0 554.2702503888687 0 554.2702503888687 0 18.97940008672037 0 0 0 0.5 0 0 0 TV[DP] 2.1532 - 6 NaN NaN 111355.8 NaN 1169 1514 2684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2686 24.877 NaN 30279 35 0 5760.3 0.261 -1 VKHCKRFF 8 24 561.3067233533843 NaN 0 561.306640625 PEAK HCD FTMS 0 0 0 2684 5112.86669921875 0.6528369599521381 1 -0.013261795043945312 2 Carbamidomethyl (C) _VKHC(Carbamidomethyl (C))KRFF_ ENSG00000059377|ENST00000448866|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-2|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1;nc|ENSG00000059377|P24557-4|TBXAS1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88339.2 NaN 1170 1514 2684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2687 24.881 NaN 37502 35 0 11700 0.261 + 30178 VHDWPLKQ 8 26 511.7724045507208 NaN 0 511.77252197265625 PEAK HCD FTMS 0 0 0 2684 6995.5517578125 0.7128407451693436 -6 0.07921600341796875 3 Unmodified _VHDWPLKQ_ REV__nc|nan|Q5SNV9-3|C1orf167 4.75600775471527 0.38822285293237185 2 D 1 -1 11.99 0 0 1.1737 0 0 236.13158781062288 667.3535250299436 903.4851128405664 0 0 0 0 0 0.5 0 0 0 D 1.1737 + + 1 + NaN NaN 97913.3 NaN 1171 1514 2684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2689 24.887 NaN 25245 35 0 4023.6 0.412 + -1 LYPYMNFM 8 25 555.7352355420201 NaN 0 555.837646484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _LYPYM(Oxidation (M))NFM(Oxidation (M))_ REV__ENST00000396604.5_1_11:9495532-9496114:+|nuORF;REV__ENST00000531943.5_1_11:9495526-9496114:+|nuORF 0.7936320650641473 0.38822285293237185 2 C 1 -1 5.4846 0 0 0.49435 0 0 856.5173480598229 146.90554224185783 1003.4228903016807 0 0 0 0 0 0 0 0 0 C 0.49435 - 1 + NaN NaN 113186.7 NaN 1172 1515 2688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2691 24.895 NaN 30350 35 0 5482.4 0.327 + 9194 HPLHNDPNL 9 16 528.7647576161752 1055.5149622991503 2 528.7648315429688 MULTI HCD FTMS 0 0 0 2690 16522.7890625 0.08000592710194222 -17 0.17836761474609375 1 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 8.745405648335112 0.2847203663274469 2 {I|L}{[ES]|[DT]|[{I|L}C]} 3 7 8.072 0 0 0.76474 0 0 708.3179188459 0 708.3179188459 0 8.071968632008437 0 0 0 0 0 0 0 {I|L}{[ES]|[DT]|[{I|L}C]} 0.76474 - 1 NaN NaN 92298.5 NaN 1173 1516 2690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2692 24.899 NaN 16067 35 0 6590.2 0.261 + 23715 RQQEDCAIW 9 12 574.7612061633115 1147.507859393423 2 574.76171875 MULTI HCD FTMS 0 0 0 2690 9782.0078125 0.2648327362896487 29 -0.3206787109375 2 Unmodified _RQQEDCAIW_ ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85890.8 NaN 1174 1516 2690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2693 24.902 NaN 16368 35 0 5223.1 0.261 + -1 RICCFINLY 9 13 601.2959832395359 1200.5774135458717 2 601.2960815429688 MULTI HCD FTMS 0 0 0 2690 8935.240234375 0.7897669960669117 1 -0.016542434692382812 3 Carbamidomethyl (C) _RIC(Carbamidomethyl (C))CFINLY_ REV__ENST00000425345.1_2_7:37961046-37988479:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88234.1 NaN 1175 1516 2690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2694 24.906 NaN 15096 35 0 4258.3 0.261 -1 LYKWDMKC 8 12 572.2674427383852 NaN 0 572.26806640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _LYKWDMKC(Carbamidomethyl (C))_ ENSG00000181038|ENST00000341249|METTL23;nc|ENSG00000181038|Q86XA0-2|METTL23 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91087.7 NaN 1176 1516 2690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2696 24.911 NaN 209000 35 0 57955 0.411 + 4229 EVEAEAVNR 9 68 508.7536872487665 1015.492821564333 2 508.7393798828125 MULTI HCD FTMS 0 0 0 2695 6926.47509765625 0.430501254288952 -2 0.02484893798828125 1 Unmodified _EVEAEAVNR_ ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2 20.41453444215458 0.18397929046831515 2 {[QG]|[NA]}D 3 7 26.796 0 0 2.6387 0 0 0 712.3642869786486 712.3642869786486 6.618026142825798 0 0 0 0 0 1.5228787452803376 0 0.3494850021680094 {[QG]|[NA]}D 2.6387 - 224 NaN NaN 147941.4 NaN 1177 1517 2695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2698 24.919 NaN 647900 35 0 100640 0.327 + 3078 EAGPSIVHR 9 56 483.26186626032825 964.5091795874565 2 483.26171875 MULTI HCD FTMS 0 0 0 2697 367201.09375 0.49147187743086584 6 -0.0629425048828125 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 70.33199760932243 0.0089807860198535 2 EAGPS{I|L}VHR 9 0 + 87.049 0 0 9.0252 9.0252 94.272 0 0 0 60.38848016779836 19.365429718850734 19.365429718850734 9.730749808046326 0 1.055462187404089 0 0.3252574989159953 0.28872548999643577 + + EAGPS{I|L}VHR;EQPS{I|L}VHR 9.0252;8.0163 +;- + 244 + NaN NaN 197771.8 NaN 1178 1518 2697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2699 24.924 NaN 15390 35 0 4467.5 0.261 + 22519 QRWTEPSYH 9 12 602.2806888619083 1202.5468247906165 2 602.2804565429688 MULTI HCD FTMS 0 0 0 2697 13277.9921875 0.6816620994127244 9 -0.08709907531738281 2 Unmodified _QRWTEPSYH_ REV__ENST00000290943.10_1_9:33529005-33529062:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102299.3 NaN 1179 1518 2697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2701 24.929 NaN 90415 35 0 12807 0.327 + 27804 TAVKNDYEM 9 38 543.7422502191591 1085.4699475051182 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2700 59944.05859375 0.30786910719060534 32 -0.34804725646972656 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 45.739877483867886 0.03899552410870734 2 [TA]V{[QS]|[NT]}AAYE{M(Oxidation (M))|F} 10 3 + 35.903 0 0 3.3076 3.3076 88.973 0 0 0 5.642040441009044 9.704999916446795 5.642040441009044 35.90288749933073 0 1.9247425010840047 0 0 0 [TA]V{[QS]|[NT]}AAYE{M(Oxidation (M))|F} 3.3076 - 36 NaN NaN 95870.7 NaN 1180 1519 2700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2702 24.934 NaN 45560 35 0 5386.4 0.261 + 21893 QDEILAHR 8 26 491.2591052378132 980.5036575424264 2 491.2590026855469 MULTI HCD FTMS 0 0 0 2700 20358.26953125 0.007834431435923018 111 -1.2710704803466797 2 Unmodified _QDEILAHR_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 4.75600775471527 0.5349361699807423 2 VHR 3 6 18.672 0 0 1.9043 0 0 570.2656642336358 0 570.2656642336358 0 16.19788758288394 0 0 0 0 0 0 0 VHR 1.9043 - 11 + NaN NaN 87989.3 NaN 1181 1519 2700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2703 24.937 NaN 45872 35 0 7171.8 0.261 + -1 AGGPEEEPEM 10 18 531.2080927266654 1060.4016325201308 2 531.7098999023438 MULTI HCD FTMS 0 0 0 2700 6704.74609375 0.5745807804676378 -10 0.12233352661132812 3 Oxidation (M) _AGGPEEEPEM(Oxidation (M))_ REV__ENSG00000122824|ENST00000356450|NUDT10;REV__ENSG00000173598|ENST00000415493|NUDT4;REV__ENSG00000177144|ENST00000322209|NUDT4B;REV__ENSG00000196368|ENST00000375992|NUDT11;REV__nc|ENSG00000173598|Q9NZJ9-3|NUDT4 9.38312468134398 0.42334543440173333 2 E[EP]{M(Oxidation (M))|F} 4 -1 23.94 0 0 2.2577 0 0 540.2192249982437 0 540.2192249982437 0 23.940162615404077 0 0 0 0.5 0 0.4247425010840047 0 E[EP]{M(Oxidation (M))|F} 2.2577 + + 2 NaN NaN 105942.8 NaN 1182 1519 2700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2705 24.943 NaN 74001 35 0 10340 0.327 + 26080 SPGGVYATR 9 27 454.23524214164576 906.4559313500915 2 454.23504638671875 MULTI HCD FTMS 0 0 0 2704 36806.375 0.5312253977016844 6 -0.055816650390625 1 Unmodified _SPGGVYATR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 21.590151480376914 0.17382222009858564 2 SPGGVY 6 3 66.631 0 0 7.3507 0 0 0 343.17377649478755 343.17377649478755 66.63093786472515 0 0 0 0 0.8494850021680094 1.3979400086720375 0 0 + SPGGVY 7.3507 + + 30 + NaN NaN 114122.2 NaN 1183 1520 2704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2706 24.947 NaN 110850 35 0 10774 0.261 + 22480 QRKNPKDGNF 10 37 401.8778842771242 NaN 0 401.8778991699219 PEAK HCD FTMS 0 0 0 2704 20862.953125 0.2076975695385588 742 -13.446983337402344 2 Unmodified _QRKNPKDGNF_ ENSG00000163961|ENST00000318037|RNF168 1.6526216038709556 0.33876987398426067 2 P 1 9 0.3786 0 0 0.047223 0 0 533.0148495095235 168.6456698053344 701.6605193148579 0 0 0 0 0 0 0 0 0 + P 0.047223 + + 1 + NaN NaN 113549.4 NaN 1184 1520 2704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2707 24.951 NaN 45053 35 0 9418.6 0.261 + 15205 LNISNITDP 9 28 493.7610174086487 NaN 0 493.7610168457031 PEAK HCD FTMS 0 0 0 2704 7222.3349609375 1 0 0 3 Unmodified _LNISNITDP_ REV__ENSG00000175216|ENST00000529230|CKAP5;REV__nc|ENSG00000175216|Q14008-2|CKAP5;REV__nc|ENSG00000175216|Q14008-3|CKAP5 3.5964929083625545 0.27781873954207675 2 V 1 -1 6.9897 0 0 0.70925 0 0 231.12049951028456 652.2941988580686 883.4146983683531 0 0 0 0 0 0 0 0 0 V 0.70925 - 2 + NaN NaN 90644.1 NaN 1185 1520 2704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2709 24.956 NaN 38209 35 0 6343.6 0.411 + 12144 KKKKKKKKKSF 11 29 469.3284353438654 NaN 0 469.3282775878906 PEAK HCD FTMS 0 0 0 2708 11343.767578125 0.5612851283444878 -21 0.23027420043945312 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97901.5 NaN 1186 1521 2708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2711 24.964 NaN 707130 35 0 64017 0.327 + 9547 HRDYETATL 9 61 553.2671728507465 1104.519792768293 2 553.267333984375 MULTI HCD FTMS 0 0 0 2710 344561.0625 0.06747589363767108 28 -0.29647064208984375 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 47.748688679222035 0.03472022231463587 2 CQAHEAT{I|L} 8 5 72.218 0 0 6.5384 0 0 233.14642531562657 0 233.14642531562657 0 21.090671722280234 0 0 0 1.4361818737241734 0 1.3494850021680094 0 CQAHEAT{I|L} 6.5384 - 1313 NaN NaN 197284 NaN 1187 1522 2710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2712 24.969 NaN 31148 35 0 8491.6 0.261 + 30921 VRHRKQMH 8 12 546.3040771484375 NaN 0 546.3040771484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VRHRKQMH_ REV__ENSG00000166479|ENST00000299608|TMX3;REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF;REV__ENST00000580785.1_1_18:66365045-66365237:-|nuORF;REV__nc|ENSG00000166479|Q96JJ7-2|TMX3 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88805.2 NaN 1188 1522 2710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2714 24.974 NaN 309610 35 0 38868 0.411 + 28686 TSETPQPPR 9 66 506.75659515389935 1011.4986373745987 2 506.7565002441406 MULTI HCD FTMS 0 0 0 2713 159313.8125 0.6424200664265445 14 -0.15296173095703125 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 66.45667989310934 0.010234776021261575 2 {[MG]|[TS]}ET 4 5 36.471 0 0 3.6056 0 0 0 590.3054990654083 590.3054990654083 11.149607378638208 0 0 0 0 1.5 0 1.1549471895720984 0 + {[MG]|[TS]}ET 3.6056 + + 156 NaN NaN 178796.4 NaN 1189 1523 2713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2716 24.982 NaN 29010 35 0 3019.9 0.411 + 32075 VYQNHVQHL 9 38 569.29369520524 1136.57283747728 2 569.2937622070312 MULTI HCD FTMS 0 0 0 2715 11816.3671875 0.34405198125120917 -10 0.10927772521972656 1 Unmodified _VYQNHVQHL_ ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5 13.90604991867851 0.24021115267848145 2 QH{I|L} 3 6 24.693 0 0 2.1726 0 0 740.3588734357437 0 740.3588734357437 0 17.245462655597095 0 0 0 0 0 0 0 + QH{I|L} 2.1726 + + 15 NaN NaN 98821.8 NaN 1190 1524 2715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2718 24.99 NaN 40340 35 0 3740.9 0.411 -1 MSMTCWLE 8 40 550.2174346566968 NaN 0 550.2174682617188 PEAK HCD FTMS 0 0 0 2717 9645.595703125 0.4886492131221377 28 -0.32065773010253906 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MSMTC(Carbamidomethyl (C))WLE_ ENST00000225298.11_1_17:49354614-49354644:+|nuORF 0.6903765706972694 0.38822285293237185 2 K 1 -1 1.5938 0 0 0.1451 0 0 505.09171638194977 462.21811853580317 967.3098349177529 0 0 0 0 0 0 0 0 0 K 0.1451 - 1 + NaN NaN 108918.5 NaN 1191 1525 2717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2720 24.998 NaN 28168 35 0 5223.9 0.411 + 24110 RYAQEFWE 8 34 564.7605590820312 NaN 0 564.7605590820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RYAQEFWE_ ENST00000228345.9_1_12:1034631-1039134:-|nuORF;ENST00000488642.6_1_12:1034631-1036165:-|nuORF;nc|ENSG00000002016|P43351-2|RAD52 2.302733041254933 0.38822285293237185 2 Y 1 7 3.0989 0 0 0.27485 0 0 579.4912794904311 381.93662439517817 961.4279038856093 0 0 0 0 0 0 0 0 0 + Y 0.27485 + + 3 + NaN NaN 95034.7 NaN 1192 1526 2719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2722 25.007 NaN 92629 35 0 8590.8 0.411 -1 MKQCWAEA 8 49 491.70883664549046 981.403120357781 2 491.7091064453125 MULTI HCD FTMS 0 0 0 2721 14875.943359375 0.6257079844345292 -8 0.07707023620605469 1 Oxidation (M) _M(Oxidation (M))KQCWAEA_ ENSG00000101890|ENST00000218006|GUCY2F 7.910154910731844 0.5302565402355366 2 EA 2 -1 25.217 0 0 2.5694 0 0 763.3132190258749 0 763.3132190258749 0 7.564987362915829 0 0 0 0.4247425010840047 0 0 0 EA 2.5694 + + 22 NaN NaN 123184.1 NaN 1193 1527 2721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2724 25.015 NaN 328080 35 0 27969 0.411 + 9195 HPLHNDPNL 9 77 528.7647576161752 1055.5149622991503 2 528.7647094726562 MULTI HCD FTMS 0 0 0 2723 163581.859375 0.79208893043728 -5 0.04023933410644531 1 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 125.52916310638031 0.0008761121089336018 2 HP{I|L}HNDP{[QV]|[N{I|L}]|[RA]|[KV]} 9 0 + 76.67 0 0 7.2638 7.2638 87.733 0 0 0 10.94212497064703 3.711375162600703 3.711375162600703 3.711375162600703 0 2.4361818737241734 0 0.6549471895720984 1.5158715643802767 + + HP{I|L}HNDP{[QV]|[N{I|L}]|[RA]|[KV]};HP{I|L}HND{I|L}[NP];HP{I|L}HGGDP{[QV]|[N{I|L}]|[RA]|[KV]};HP{I|L}HGGD{I|L}[NP];HP{I|L}DP[HN]{[QV]|[N{I|L}]|[RA]|[KV]};[WR]AANDP{[QV]|[N{I|L}]|[RA]|[KV]};[WR]DNAAP{[QV]|[N{I|L}]|[RA]|[KV]};[QT]{I|L}D[HT][WR];[WR]AAND{I|L}[NP];[WR]QQDP{[QV]|[N{I|L}]|[RA]|[KV]} 7.2638;6.9122;6.3914;6.0398;3.4482;3.2555;2.9769;2.9536;2.9038;2.7856 +;-;-;-;-;-;-;-;-;- + 2108 + NaN NaN 180284.6 NaN 1194 1528 2723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2726 25.023 NaN 80795 35 0 9592.4 0.327 -1 STMSTNGIPR 10 40 540.2611348691702 1078.5077168051403 2 540.2611694335938 MULTI HCD FTMS 0 0 0 2725 21790.720703125 0.33428382444087973 -17 0.17431259155273438 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 14.405379775768559 0.37636895476610294 2 {[MG]|[TS]}{M(Oxidation (M))|F}{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 10 -1 + 11.936 0 0 1.1067 1.1067 85.726 0 0 0 6.962724883926655 1.4781748188863713 1.4781748188863713 11.935749724493121 0 0.5 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 1.1067 + + 10 + NaN NaN 86515.9 NaN 1195 1529 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2727 25.027 NaN 18928 35 0 5758.3 0.261 -1 FVNDDRHVM 9 17 574.7612061633115 1147.507859393423 2 574.7620849609375 MULTI HCD FTMS 0 0 0 2725 11709.6572265625 0.3170208635860672 42 -0.4950218200683594 2 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95508 NaN 1196 1529 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2728 25.03 NaN 12102 35 0 5055.3 0.261 + 18095 MNVFIHFFF 9 10 601.295654296875 NaN 0 601.295654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MNVFIHFFF_ REV__tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81550.7 NaN 1197 1529 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2729 25.034 NaN 33717 35 0 8784.6 0.262 + 30179 VHDWPLKQ 8 25 511.7725830078125 NaN 0 511.7725830078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VHDWPLKQ_ REV__nc|nan|Q5SNV9-3|C1orf167 2.0597508629832335 0.38822285293237185 2 D 1 -1 6.9897 0 0 0.68424 0 0 236.13100214668128 667.3532808893186 903.4842830359999 0 0 0 0 0 0 0 0 0 D 0.68424 + + 1 + NaN NaN 86463.2 NaN 1198 1529 2725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2731 25.039 NaN 54779 35 0 4991.4 0.411 + 3160 EATTTHPEV 9 47 492.73509711924925 983.4556413052985 2 492.7354736328125 MULTI HCD FTMS 0 0 0 2730 8584.3115234375 0.4978243808212509 -1 0.01657867431640625 1 Unmodified _EATTTHPEV_ REV__ENST00000503270.2_3_4:125384624-125384930:-|nuORF 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5745 0 0 818.4098782211173 0 818.4098782211173 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5745 - 7 + NaN NaN 101553.3 NaN 1199 1530 2730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2733 25.047 NaN 140010 35 0 26083 0.327 + 3079 EAGPSIVHR 9 38 483.26186626032825 964.5091795874565 2 483.26165771484375 MULTI HCD FTMS 0 0 0 2732 81673.578125 0.10931412640322574 19 -0.21341514587402344 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 24.990960013464015 0.14443998892849796 2 {[CP]|[EA]}GPS{I|L}VHR 9 0 + 56.348 0 0 5.8422 5.8422 93.045 0 0 0 41.68243764792422 16.478174818886373 16.478174818886373 56.348200093054714 0 0.3494850021680094 0 0 0 + + {[CP]|[EA]}GPS{I|L}VHR 5.8422 + + 44 + NaN NaN 114165.5 NaN 1200 1531 2732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2734 25.052 NaN 64701 35 0 8698.2 0.261 -1 TAVKNDYEM 9 27 543.7422502191591 1085.4699475051182 2 543.7421264648438 MULTI HCD FTMS 0 0 0 2732 52400.78515625 0.2691273050340882 44 -0.5204257965087891 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 19.361941925380144 0.1930734562688509 2 E{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.6451 0 0 791.3805051267843 0 791.3805051267843 0 12.513487579716767 0 0 0 0.9247425010840047 0 0 0 E{M(Oxidation (M))|F} 2.6451 + + 8 NaN NaN 86701.6 NaN 1201 1531 2732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2735 25.055 NaN 15171 35 0 5817.1 0.261 -1 MMDTMVLHL 9 12 574.7612061633115 1147.507859393423 2 574.7605590820312 MULTI HCD FTMS 0 0 0 2732 8556.6474609375 0.2316579994600115 44 -0.5204257965087891 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))MDTMVLHL_ ENST00000356136.7_2_11:75599912-75672525:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101209.2 NaN 1202 1531 2732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2736 25.059 NaN 24908 35 0 4680.9 0.261 -1 AFNFNCCCF 9 16 563.2017223373855 1124.388891741571 2 563.7034301757812 MULTI HCD FTMS 0 0 0 2732 2221.751953125 0.21025425150303795 -6 0.05704498291015625 4 Carbamidomethyl (C) _AFNFNC(Carbamidomethyl (C))CCF_ ENST00000497873.1_1_21:34107263-34123563:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92506.5 NaN 1203 1531 2732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2737 25.062 NaN 40509 35 0 10091 0.261 -1 CLWVPIAQ 8 26 493.7610174086487 NaN 0 493.7613525390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))LWVPIAQ_ ENST00000577437.1_1_X:151298011-151304248:-|nuORF 2.577480529830294 0.38822285293237185 2 H 1 -1 3.0989 0 0 0.31445 0 0 581.9452087901506 263.47471033267817 845.4199191228288 0 0 0 0 0 0 0 0 0 H 0.31445 - 1 + NaN NaN 87832 NaN 1204 1531 2732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2739 25.068 NaN 47459 35 0 6914.4 0.411 -1 QPEGEEPEM 9 37 531.2080927266654 1060.4016325201308 2 531.2081909179688 MULTI HCD FTMS 0 0 0 2738 26027.693359375 1 0 0 1 Oxidation (M) _QPEGEEPEM(Oxidation (M))_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 29.081581746732265 0.1154664336125038 2 PE{M(Oxidation (M))|F} 3 -1 34.425 0 0 3.2464 0 0 669.260511664451 0 669.260511664451 0 27.12266579556342 0 0 0 1 0 0.4247425010840047 0 PE{M(Oxidation (M))|F} 3.2464 + + 33 + NaN NaN 93587.7 NaN 1205 1532 2738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2741 25.076 NaN 37909 35 0 7383.8 0.411 + 12145 KKKKKKKKKSF 11 30 469.3284353438654 NaN 0 469.3285827636719 PEAK HCD FTMS 0 0 0 2740 12507.6279296875 0.618872477724031 -9 0.09320640563964844 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103123.1 NaN 1206 1533 2740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2743 25.084 NaN 451260 35 0 42935 0.327 + 9548 HRDYETATL 9 54 553.2671728507465 1104.519792768293 2 553.2672729492188 MULTI HCD FTMS 0 0 0 2742 208681.21875 0.04086634635494999 40 -0.470947265625 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 27.628801355627647 0.12213550946336599 2 ECH{M(Oxidation (M))|F}AT{I|L} 7 6 53.352 0 0 4.8303 0 0 285.16987807441564 0 285.16987807441564 0 24.22708024143219 0 0 0 0.4247425010840047 0 1.8494850021680094 0 ECH{M(Oxidation (M))|F}AT{I|L} 4.8303 - 344 NaN NaN 143710 NaN 1207 1534 2742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2744 25.088 NaN 97105 35 0 13484 0.264 -1 WNIISPREF 9 42 401.8778842771242 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 2742 18998.712890625 0.18913844402091085 756 -14.038740158081055 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WNIISPREF_ ENSG00000164211|ENST00000296632|STARD4;ENST00000511569.5_1_5:110836619-110848199:-|nuORF;nc|ENSG00000164211|Q96DR4-2|STARD4;STARD4|p.D118H|1|0.19|ENSG00000164211|chr5:111501047-111501047|C/G|missense_variant 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93800.8 NaN 1208 1534 2742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2745 25.092 NaN 72220 35 0 7715.2 0.261 + 3137 EAQEIVRH 8 42 491.2591052378132 980.5036575424264 2 491.2588806152344 MULTI HCD FTMS 0 0 0 2742 20141.7109375 0.007751093632973214 126 -1.4993858337402344 3 Unmodified _EAQEIVRH_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9;PARP1-LIN9|1|fusion 7.910154910731844 0.5302565402355366 2 {I|L}V[RH] 4 4 9.2968 0 0 0.94817 0 0 457.1794520754326 0 457.1794520754326 0 9.296831374325906 0 0 0 0 0 0 0 + {I|L}V[RH] 0.94817 + + 12 + NaN NaN 96189.9 NaN 1209 1534 2742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2746 25.095 NaN 20771 35 0 5048.8 0.261 + -1 QLPAIVVLLI 10 13 560.8714126189726 NaN 0 560.8711547851562 PEAK HCD FTMS 0 0 0 2742 8655.525390625 1 0 0 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QLPAIVVLLI_ REV__ENST00000370713.5_1_1:82432165-82432204:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91249.9 NaN 1210 1534 2742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2747 25.098 NaN 38558 35 0 6540.3 0.261 -1 KVATQERN 8 20 494.2643169778358 986.5140810224716 2 494.2631530761719 MULTI HCD FTMS 0 0 0 2742 4262.80322265625 0.5324818190728695 -6 0.06907844543457031 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KVATQERN_ ENSG00000159496|ENST00000290691|RGL4;nc|ENSG00000159496|Q8IZJ4-2|RGL4;RGL4|p.R377K|1|0.24|ENSG00000159496|chr22:23696657-23696657|G/A|missense_variant 0.7936320650641473 0.540814922690045 2 D 1 -1 14.604 0 0 1.4804 0 0 853.4795331482513 0 853.4795331482513 0 14.604093769761874 0 0 0 0 0 0 0 D 1.4804 - 4 + NaN NaN 90066.7 NaN 1211 1534 2742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2749 25.104 NaN 138590 35 0 17120 0.327 + 28687 TSETPQPPR 9 42 506.75659515389935 1011.4986373745987 2 506.7563171386719 MULTI HCD FTMS 0 0 0 2748 50090.66796875 0.2019865681378654 26 -0.2885856628417969 1 Unmodified _TSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 32.78568957990786 0.09846250359632436 2 {[MG]|[TS]}ET 4 5 28.188 0 0 2.7867 0 0 0 590.3062121289485 590.3062121289485 21.197887582883936 0 0 0 0 0.8494850021680094 0 0.3494850021680094 0 + {[MG]|[TS]}ET 2.7867 + + 17 + NaN NaN 107530.1 NaN 1212 1535 2748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2750 25.108 NaN 96034 35 0 16980 0.261 -1 IQMRPDLK 8 28 508.7811721161636 1015.5477912991272 2 508.78106689453125 MULTI HCD FTMS 0 0 0 2748 29335.30859375 0.5611249668529428 -8 0.0971221923828125 2 Oxidation (M) _IQM(Oxidation (M))RPDLK_ ENSG00000120251|ENST00000264426|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000120251|P42262-4|GRIA2 6.723162845929126 0.5320176132289695 2 D 1 -1 11.99 0 0 1.1806 0 0 259.19243303370666 638.3097628229124 897.502195856619 0 0 0 0 0 0.5 0 0 0 D 1.1806 + + 12 + NaN NaN 101968.6 NaN 1213 1535 2748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2751 25.112 NaN 65910 35 0 7896.5 0.261 + -1 PVPLWCPY 8 35 516.2542474704053 1030.4939420076105 2 516.254150390625 MULTI HCD FTMS 0 0 0 2748 29285.603515625 0.8113201840219656 -8 0.0971221923828125 3 Carbamidomethyl (C) _PVPLWC(Carbamidomethyl (C))PY_ REV__ENST00000508385.5_1_4:2800788-2801025:+|nuORF 2.8892196856762586 0.5377058178582064 2 EKA{[SA]|[TG]}E[{M(Oxidation (M))|F}T] 8 -1 14.614 0 0 1.4182 0 0 149.10826006603105 0 149.10826006603105 0 14.614262661931436 0 0 0 0.4247425010840047 0 0.4247425010840047 0 EKA{[SA]|[TG]}E[{M(Oxidation (M))|F}T] 1.4182 - 34 + NaN NaN 94026.1 NaN 1214 1535 2748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2753 25.117 NaN 37974 35 0 5534.4 0.327 + 32076 VYQNHVQHL 9 23 569.29369520524 1136.57283747728 2 569.2936401367188 MULTI HCD FTMS 0 0 0 2752 18801.833984375 0.547444754452417 2 -0.020128250122070312 1 Unmodified _VYQNHVQHL_ ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5 25.399314129420986 0.14091189997036632 2 VYQ 3 6 33.645 0 0 2.9602 0 0 0 743.3595064752561 743.3595064752561 5.457574905606748 0 0 0 0 0 1.6989700043360187 0 0 + VYQ 2.9602 + + 9 + NaN NaN 93723.2 NaN 1215 1536 2752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2754 25.122 NaN 45307 35 0 10252 0.261 + 18014 MLLDLQTKS 9 29 524.7889230618212 1047.5632931904422 2 524.7891235351562 MULTI HCD FTMS 0 0 0 2752 23734.880859375 0.5980594879337967 -6 0.07788467407226562 2 Unmodified _MLLDLQTKS_ ENSG00000072571|ENST00000393915|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88933.9 NaN 1216 1536 2752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2756 25.127 NaN 68529 35 0 9216.5 0.327 -1 RYMPPAHRNF 10 31 435.54871109776207 1303.6243038934863 3 435.8831787109375 MULTI HCD FTMS 0 0 0 2755 29549.82421875 0.23578014243638934 59 -0.6916408538818359 1 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ ENSG00000131203|ENST00000518237|IDO1 1.5922808571145555 0.4668755089467872 2 A 1 -1 5.4846 0 0 0.42072 0 0 660.3038215710238 569.2589815729124 1229.5628031439362 0 0 0 0 0 0 0 0 0 A 0.42072 + + 1 + NaN NaN 105271.9 NaN 1217 1537 2755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2757 25.132 NaN 36844 35 0 8952.7 0.261 + -1 FEVFCYGA 8 24 496.71229333405415 NaN 0 496.71185302734375 PEAK HCD FTMS 0 0 0 2755 3165.2783203125 0.4918041368511134 -2 0.023647308349609375 2 Carbamidomethyl (C) _FEVFC(Carbamidomethyl (C))YGA_ REV__ENSG00000180098|ENST00000373830|TRNAU1AP;REV__ENST00000464880.5_1_1:28879622-28887433:+|nuORF;REV__ENST00000480930.5_1_1:28879622-28887666:+|nuORF;REV__ENST00000491577.5_1_1:28879622-28887259:+|nuORF;REV__ENST00000495995.5_1_1:28880088-28887666:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86428.2 NaN 1218 1537 2755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2759 25.137 NaN 273960 35 0 24482 0.327 + 9196 HPLHNDPNL 9 50 528.7647576161752 1055.5149622991503 2 528.7647094726562 MULTI HCD FTMS 0 0 0 2758 164128.34375 0.7947350931948638 5 -0.05801963806152344 1 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 59.368380827593164 0.01846506874148156 2 HP{I|L}HND 6 3 42.146 0 0 3.9929 0 0 0 339.1667735648796 339.1667735648796 10.458347877577197 0 0 0 0 1.6747425010840047 0 0 0.3494850021680094 + HP{I|L}HND 3.9929 + + 322 + NaN NaN 124425 NaN 1219 1538 2758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2760 25.142 NaN 50911 35 0 11610 0.261 -1 GQPPNYEM 8 26 476.19857394400617 NaN 0 476.1985778808594 PEAK HCD FTMS 0 0 0 2758 5776.84326171875 0.31485613670836976 20 -0.22159385681152344 2 Oxidation (M) _GQPPNYEM(Oxidation (M))_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2 2.577480529830294 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.73546 0 0 164.0605867534436 712.2629488580686 876.3235356115122 0 0 0 0 0 0 0 0 0 A 0.73546 - 1 + NaN NaN 96613.8 NaN 1220 1538 2758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2762 25.147 NaN 110250 35 0 18199 0.327 -1 STMSTNGIPR 10 34 540.2611348691702 1078.5077168051403 2 540.2611083984375 MULTI HCD FTMS 0 0 0 2761 39931.54296875 0.6125758335980495 -7 0.07982063293457031 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 22.65808497894818 0.29917593477267174 2 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}[RP] 10 -1 + 26.884 0 0 2.4927 2.4927 83.743 0 0 0 26.88424994129406 9.259687322722808 9.259687322722808 9.164539485499251 0 0.5 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}[RP];{[MG]|[TS]}{M(Oxidation (M))|F}STGG{[VA]|[{I|L}G]}[RP] 2.4927;1.643 +;- + 21 + NaN NaN 98294.9 NaN 1221 1539 2761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2763 25.152 NaN 57919 35 0 9133.8 0.261 -1 EAVGVMATR 9 29 475.24225830104996 948.4699636688999 2 475.24237060546875 MULTI HCD FTMS 0 0 0 2761 18471.974609375 0.48567693168207354 -6 0.07160758972167969 2 Oxidation (M) _EAVGVM(Oxidation (M))ATR_ ENST00000398559.6_1_3:69101351-69101438:-|nuORF 2.9952420565917617 0.3283108881486655 2 [W{I|L}]R{M(Oxidation (M))|F} 4 -1 14.693 0 0 1.5491 0 0 0 343.17319666080317 343.17319666080317 7.703037561203843 0 0 0 0 0 0 0 0 [W{I|L}]R{M(Oxidation (M))|F} 1.5491 - 11 + NaN NaN 92252.8 NaN 1222 1539 2761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2765 25.157 NaN 42819 35 0 12680 0.327 -1 WQLDCLACLLK 11 25 454.9006453890995 NaN 0 454.9004211425781 PEAK HCD FTMS 0 0 0 2764 14808.650390625 0.3086048152586792 89 -1.0355587005615234 1 Carbamidomethyl (C) _WQLDC(Carbamidomethyl (C))LACLLK_ ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89379.7 NaN 1223 1540 2764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2766 25.162 NaN 75000 35 0 8429.4 0.261 + -1 TRAGSCMEA 9 34 491.70883664549046 981.403120357781 2 491.7088928222656 MULTI HCD FTMS 0 0 0 2764 16292.1337890625 0.6852754107098378 5 -0.05817413330078125 2 Carbamidomethyl (C) _TRAGSC(Carbamidomethyl (C))MEA_ REV__ENST00000454612.6_1_6:30850742-30851100:+|nuORF 8.745405648335112 0.2847203663274469 2 EA 2 -1 25.217 0 0 2.5694 0 0 763.3127650735897 0 763.3127650735897 0 16.80015006187311 0 0 0 0.4247425010840047 0 0 0 EA 2.5694 + + 14 NaN NaN 99723.6 NaN 1224 1540 2764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2767 25.165 NaN 16709 35 0 5316 0.261 -1 0 13 624.2355552509495 623.2282787843494 1 624.2361450195312 MULTI HCD FTMS 0 0 0 2764 8707.4306640625 0.7008440869503566 3 -0.03808403015136719 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92906.7 NaN 1225 1540 2764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2768 25.168 NaN 31041 35 0 9008.2 0.261 + 3827 EPFLQFRR 8 14 546.8005196750038 NaN 0 546.800537109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _EPFLQFRR_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84643.4 NaN 1226 1540 2764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2770 25.174 NaN 90348 35 0 9481.5 0.411 + 3080 EAGPSIVHR 9 58 483.26186626032825 964.5091795874565 2 483.2615661621094 MULTI HCD FTMS 0 0 0 2769 26736.28125 0.035784562097201426 29 -0.33377647399902344 1 Unmodified _EAGPSIVHR_ ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2 21.536976647645854 0.1742816388551942 2 S{I|L}VHR 5 4 35.815 0 0 3.7133 0 0 354.15579931577525 0 354.15579931577525 0 14.04529204136331 0 0 0 0.3252574989159953 0 0 0 + S{I|L}VHR 3.7133 + + 121 + NaN NaN 128890.1 NaN 1227 1541 2769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2772 25.182 NaN 562380 35 0 27087 0.327 + 26023 SPEEKQEML 9 79 553.7553587536875 1105.4961645741748 2 553.7555541992188 MULTI HCD FTMS 0 0 0 2771 213040 0.6188609486457288 -24 0.26253700256347656 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 93.93812099017352 0.0044227730261779084 2 [DP]TEKQE{M(Oxidation (M))|F}{I|L} 9 2 + 68.252 0 0 6.1738 6.1738 87.696 0 0 0 8.49439772581654 10.215299873086607 8.49439772581654 8.49439772581654 0 1.774227503252014 1.6989700043360187 1.0189301784845295 0 [DP]TEKQE{M(Oxidation (M))|F}{I|L};[PS]EEKQE{M(Oxidation (M))|F}{I|L};[DP]TEK[AG]E{M(Oxidation (M))|F}{I|L};SPEEKQE{M(Oxidation (M))|F}{I|L};SPEEKAGE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};SPEEKA[EC]T{I|L} 6.1738;5.4055;5.3409;5.2473;5.2059;4.5725;3.2588 -;+;-;+;-;-;- + 1193 NaN NaN 168268.5 NaN 1228 1542 2771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2773 25.186 NaN 52402 35 0 7616.9 0.261 -1 TAVKNDYEM 9 28 543.7422502191591 1085.4699475051182 2 543.7420043945312 MULTI HCD FTMS 0 0 0 2771 33999.04296875 0.17461705546269846 55 -0.6502666473388672 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 29.84058131909904 0.11198220037953927 2 E{M(Oxidation (M))|F} 2 -1 31.454 0 0 2.8977 0 0 791.3817344697651 0 791.3817344697651 0 11.00833760139686 0 0 0 0.9247425010840047 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 2.8977 + + 10 + NaN NaN 89869.4 NaN 1229 1542 2771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2774 25.19 NaN 12065 35 0 4454 0.262 + -1 GAARLWDCAE 10 12 574.7612061633115 1147.507859393423 2 574.7607421875 MULTI HCD FTMS 0 0 0 2771 5128.97509765625 0.13885907019395696 54 -0.6369724273681641 3 Carbamidomethyl (C) _GAARLWDC(Carbamidomethyl (C))AE_ REV__ENSG00000133121|ENST00000336934|STARD13;REV__ENST00000487412.5_1_13:33712982-33859775:-|nuORF;REV__ENST00000498019.2_1_13:33729738-33859775:-|nuORF;REV__nc|ENSG00000133121|Q9Y3M8-2|STARD13;REV__nc|ENSG00000133121|Q9Y3M8-4|STARD13;REV__nc|ENSG00000133121|Q9Y3M8-5|STARD13;REV__STARD13|p.L291Ffs*9|1|0.36|ENSG00000133121|chr13:33129804-33129805|-/A|frameshift_variant;REV__STARD13|p.S964Qfs*4|1|0.84|ENSG00000133121|chr13:33110031-33110031|G/-|frameshift_variant 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87946.6 NaN 1230 1542 2771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2776 25.195 NaN 39404 35 0 4869.5 0.327 + 26463 STSETPQPPR 10 27 550.2727047000673 1098.5308564669344 2 550.2725830078125 MULTI HCD FTMS 0 0 0 2775 7961.34033203125 0.7182870126851597 1 -0.010141372680664062 1 Unmodified _STSETPQPPR_ ENSG00000185787|ENST00000426013|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 2.9952420565917617 0.4594494122822477 2 C 1 10 1.7827 0 0 0.16228 0 0 549.2990582265032 443.19675623111567 992.495814457619 0 0 0 0 0 0 0 0 0 C 0.16228 - 1 + NaN NaN 95236.9 NaN 1231 1543 2775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2777 25.2 NaN 45142 35 0 10573 0.261 -1 EKDLQCHA 8 15 500.7293130304982 999.4440731277964 2 500.7386169433594 MULTI HCD FTMS 0 0 0 2775 1895.1763916015625 0.3165622964811968 1 -0.010141372680664062 2 Carbamidomethyl (C) _EKDLQC(Carbamidomethyl (C))HA_ ENSG00000166164|ENST00000394688|BRD7;ENST00000466133.1_1_3:159818637-159819075:+|nuORF;nc|ENSG00000166164|Q9NPI1-2|BRD7 2.302733041254933 0.5385759549224092 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E 3 -1 10.458 0 0 1.0463 0 0 0 610.2944870738048 610.2944870738048 10.45757490560675 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E 1.0463 - 1 + NaN NaN 104356.5 NaN 1232 1543 2775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2779 25.205 NaN 39100 35 0 7862.6 0.327 + 12146 KKKKKKKKKSF 11 21 469.3284353438654 NaN 0 469.3285827636719 PEAK HCD FTMS 0 0 0 2778 13605.4501953125 0.6731922887583306 2 -0.017992019653320312 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93727.6 NaN 1233 1544 2778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2780 25.21 NaN 35680 35 0 9266.5 0.261 + 2425 DPSFDDDWE 9 21 563.2017223373855 1124.388891741571 2 564.2030639648438 MULTI HCD FTMS 0 0 0 2778 6463.4599609375 0.7392008890179479 4 -0.03791999816894531 2 Unmodified _DPSFDDDWE_ REV__ENSG00000164715|ENST00000297293|LMTK2 1.844237919475145 0.33703635659052655 2 D[WE] 3 -1 8.9524 0 0 0.7962 0 0 676.2259716749678 0 676.2259716749678 0 8.952424927286843 0 0 0 0 0 0 0 D[WE] 0.7962 + + 3 + NaN NaN 91643.1 NaN 1234 1544 2778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2782 25.215 NaN 60406 35 0 4611.9 0.411 + 4075 ESGPSIVHR 9 39 491.2591052378132 980.5036575424264 2 491.2594909667969 MULTI HCD FTMS 0 0 0 2781 10645.771484375 0.00409679057686193 137 -1.6453590393066406 1 Unmodified _ESGPSIVHR_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP 12.240655878213236 0.2545997876781172 2 {[ES]|[DT]|[{I|L}C]}[PG]S{I|L}VHR 9 0 + 26.321 0 0 2.6845 2.6845 88.045 0 0 0 23.846974825220716 16.47817481888637 16.47817481888637 26.321224933621185 0 0 0 0 0 + + {[ES]|[DT]|[{I|L}C]}[PG]S{I|L}VHR 2.6845 + + 24 + NaN NaN 100375.8 NaN 1235 1545 2781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2784 25.223 NaN 28579 35 0 5558.6 0.327 + -1 CPFGHCCW 8 17 562.1994845979975 NaN 0 562.1995849609375 PEAK HCD FTMS 0 0 0 2783 5604.11328125 0.41939794383911805 -2 0.017992019653320312 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90430.5 NaN 1236 1546 2783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2785 25.228 NaN 51190 35 0 10507 0.261 + 14301 LDFLGMIF 8 32 478.25145200219066 954.4883510711813 2 478.2513732910156 MULTI HCD FTMS 0 0 0 2783 4028.5654296875 0.4975270790527251 -3 0.028133392333984375 2 Unmodified _LDFLGMIF_ ENSG00000162600|ENST00000371226|OMA1;nc|ENSG00000162600|Q96E52-2|OMA1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96931.6 NaN 1237 1546 2783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2787 25.233 NaN 107290 35 0 16320 0.327 -1 IQMRPDLK 8 38 508.7811721161636 1015.5477912991272 2 508.78131103515625 MULTI HCD FTMS 0 0 0 2786 46684.45703125 0.8929789956185736 4 -0.04415130615234375 1 Oxidation (M) _IQM(Oxidation (M))RPDLK_ ENSG00000120251|ENST00000264426|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000120251|P42262-4|GRIA2 10.823927491677226 0.514154816617796 2 DK{I|L} 3 -1 26.427 0 0 2.6022 0 0 641.3347035138687 0 641.3347035138687 0 26.42667503568731 0 0 0 0.5 0 0 0 DK{I|L} 2.6022 - 10 NaN NaN 104602.4 NaN 1238 1547 2786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2788 25.238 NaN 119630 35 0 20764 0.261 + 8802 HINHDDPSL 9 36 524.2461301181405 1046.477707303081 2 524.245849609375 MULTI HCD FTMS 0 0 0 2786 48867.359375 0.46866437118087645 -6 0.0596160888671875 2 Unmodified _HINHDDPSL_ ENSG00000085872|ENST00000546361|CHERP 28.494509381512117 0.11816142465008336 2 DPS{I|L} 4 5 48.488 0 0 4.6334 0 0 616.2701893537125 0 616.2701893537125 0 41.04039720691517 0 0 0 1.2302046884880937 0 0.4247425010840047 0 + DPS{I|L} 4.6334 + + 62 NaN NaN 99515.2 NaN 1239 1547 2786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2790 25.243 NaN 32696 35 0 5302.1 0.327 + 26032 SPEEKRKN 8 22 494.2643169778358 986.5140810224716 2 494.76568603515625 MULTI HCD FTMS 0 0 0 2789 1337.793212890625 0.20514585959304185 1 -0.009937286376953125 1 Unmodified _SPEEKRKN_ REV__ENST00000373874.6_1_20:35220081-35220303:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94351.2 NaN 1240 1548 2789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2791 25.248 NaN 16924 35 0 2592.4 0.261 + 35141 YVGDLGSLLNS 11 19 569.2930539897324 NaN 0 569.2938842773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YVGDLGSLLNS_ REV__tr|U7SSI3|U7SSI3_FUSNUDUF3100domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01460PE=4SV=1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86322.2 NaN 1241 1548 2789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2794 25.261 NaN 88320 35 0 7965 0.327 + 9197 HPLHNDPNL 9 41 528.7647576161752 1055.5149622991503 2 528.7646484375 MULTI HCD FTMS 0 0 0 2793 43730.25390625 0.21174872431879183 17 -0.19907760620117188 1 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 21.536976647645854 0.1742816388551942 2 HP{I|L} 3 6 21.414 0 0 2.0288 0 0 0 705.2994478815061 705.2994478815061 9.579569145996345 0 0 0 0 0.4247425010840047 0 0 0 + HP{I|L} 2.0288 + + 26 + NaN NaN 100525.4 NaN 1242 1550 2793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2795 25.265 NaN 117230 35 0 15267 0.261 + 12372 KPAENDVKL 9 47 507.2849287802094 1012.5553046272188 2 507.2847595214844 MULTI HCD FTMS 0 0 0 2793 52446.69921875 0.4613341047458431 -5 0.04553985595703125 2 Unmodified _KPAENDVKL_ ENSG00000164332|ENST00000296786|UBLCP1 27.628801355627647 0.12213550946336599 2 V[K{I|L}] 3 6 20.458 0 0 2.0204 0 0 654.2975731256529 0 654.2975731256529 0 14.973024840566467 0 0 0 1 0 0 0 + V[K{I|L}] 2.0204 + + 14 + NaN NaN 108438.6 NaN 1243 1550 2793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2796 25.269 NaN 28934 35 0 4996.5 0.261 + 2426 DPSFDDDWE 9 22 563.2017223373855 1124.388891741571 2 563.2037963867188 MULTI HCD FTMS 0 0 0 2793 1935.173095703125 0.206122570297784 9 -0.11121177673339844 3 Unmodified _DPSFDDDWE_ REV__ENSG00000164715|ENST00000297293|LMTK2 1.844237919475145 0.33703635659052655 2 D[WE] 3 -1 8.9524 0 0 0.7962 0 0 676.2246899366866 0 676.2246899366866 0 8.952424927286843 0 0 0 0 0 0 0 D[WE] 0.7962 + + 5 + NaN NaN 86228.7 NaN 1244 1550 2793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2797 25.272 NaN 75536 35 0 11580 0.264 -1 0 44 400.3499755859375 NaN 0 400.3499755859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97233.7 NaN 1245 1550 2793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2799 25.278 NaN 103510 35 0 15278 0.327 -1 STMSTNGIPR 10 39 540.2611348691702 1078.5077168051403 2 540.26123046875 MULTI HCD FTMS 0 0 0 2798 46542.703125 0.7139953291315532 5 -0.06330680847167969 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 27.223235318498237 0.2564750587861972 2 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}PR 10 -1 + 38.645 0 0 3.5832 3.5832 84.38 0 0 0 38.64516253185087 14.146518864155123 14.146518864155123 9.164539485499251 0 0.5 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}STN{[VA]|[{I|L}G]}PR;{[MG]|[TS]}{M(Oxidation (M))|F}STGG{[VA]|[{I|L}G]}PR 3.5832;2.7335 +;- + 43 + NaN NaN 118239.5 NaN 1246 1551 2798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2800 25.282 NaN 61253 35 0 7348.2 0.261 -1 SADLRADAM 9 39 483.22147235319085 964.4283917731817 2 483.2212829589844 MULTI HCD FTMS 0 0 0 2798 28684.470703125 0.940748432624973 -5 0.05412101745605469 2 Oxidation (M) _SADLRADAM(Oxidation (M))_ ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25910858-25911257:+|nuORF 18.373094154950223 0.20161688160436167 2 WA{M(Oxidation (M))|F} 3 -1 31.682 0 0 3.2851 0 0 542.2797108380875 0 542.2797108380875 0 14.235162698957282 0 0 0 0.8494850021680094 0 0 0 WA{M(Oxidation (M))|F} 3.2851 - 25 NaN NaN 86339.8 NaN 1247 1551 2798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2801 25.286 NaN 51171 35 0 8108 0.261 -1 EAVGVMATR 9 22 475.24225830104996 948.4699636688999 2 475.2420349121094 MULTI HCD FTMS 0 0 0 2798 30104.275390625 0.7915207990168197 6 -0.0732574462890625 3 Oxidation (M) _EAVGVM(Oxidation (M))ATR_ ENST00000398559.6_1_3:69101351-69101438:-|nuORF 2.9952420565917617 0.3283108881486655 2 [W{I|L}]R{M(Oxidation (M))|F} 4 -1 14.693 0 0 1.5491 0 0 0 343.1728914850219 343.1728914850219 7.703037561203843 0 0 0 0 0 0 0 0 [W{I|L}]R{M(Oxidation (M))|F} 1.5491 - 10 + NaN NaN 89488.2 NaN 1248 1551 2798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2802 25.289 NaN 71896 35 0 10961 0.262 -1 LYTLYFRW 8 31 401.8778842771242 NaN 0 401.87786865234375 PEAK HCD FTMS 0 0 0 2798 16942.775390625 0.16867090908878793 773 -14.688394546508789 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LYTLYFRW_ ENST00000489185.1_1_1:62941462-62941510:-|nuORF 0.6903765706972694 0.38822285293237185 2 E 1 -1 0.9691 0 0 0.12087 0 0 549.8889034646016 119.78074060611561 669.6696440707173 0 0 0 0 0 0 0 0 0 E 0.12087 - 1 + NaN NaN 99082 NaN 1249 1551 2798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2803 25.292 NaN 81880 35 0 12446 0.261 + 3558 EITGNTVER 9 30 509.7616184581208 1017.5086839830416 2 509.76171875 MULTI HCD FTMS 0 0 0 2798 20363.53515625 0.6122589077099031 -1 0.01662445068359375 5 Unmodified _EITGNTVER_ ENSG00000129675|ENST00000250617|ARHGEF6;nc|ENSG00000129675|Q15052-2|ARHGEF6 12.240655878213236 0.2545997876781172 2 {[QN]|[E{I|L}]|[KN]}T 3 6 33.2 0 0 3.2629 0 0 0 671.3107393854124 671.3107393854124 23.16056836939058 0 0 0 0 0 2 0.4247425010840047 0 + {[QN]|[E{I|L}]|[KN]}T 3.2629 + + 11 + NaN NaN 110458.7 NaN 1250 1551 2798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2805 25.298 NaN 80636 35 0 8102.5 0.327 + 3559 EITGNTVER 9 34 509.7616184581208 1017.5086839830416 2 509.76171875 MULTI HCD FTMS 0 0 0 2804 33259.6796875 1 0 0 1 Unmodified _EITGNTVER_ ENSG00000129675|ENST00000250617|ARHGEF6;nc|ENSG00000129675|Q15052-2|ARHGEF6 14.405379775768559 0.2358970535022398 2 {[QN]|[E{I|L}]|[KN]}TG{[QS]|[NT]}VER 9 0 {[QN]|[E{I|L}]|[KN]} + + 29.442 2.2185 0.91625 2.8935 2.8935 60.045 0 0 0 0 8.472507012467787 0 0 0 0 0 0.4247425010840047 0 + + {[QN]|[E{I|L}]|[KN]}TG{[QS]|[NT]}VER 2.8935 + + 45 + NaN NaN 88946.4 NaN 1251 1552 2804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2806 25.302 NaN 28282 35 0 2918 0.261 + 28811 TTTNLLSVSGF 11 28 570.3017941442678 1138.5890353553355 2 570.3016357421875 MULTI HCD FTMS 0 0 0 2804 6420.12109375 0.5142611921478022 -5 0.06426048278808594 2 Unmodified _TTTNLLSVSGF_ ENST00000498129.6_1_1:212502517-212507353:+|nuORF 1.3295316138638542 0.4130897924953357 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88799.6 NaN 1252 1552 2804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2807 25.306 NaN 28870 35 0 11850 0.261 + 3873 EPNEVFPY 8 20 497.72934827548454 NaN 0 497.7295227050781 PEAK HCD FTMS 0 0 0 2804 2023.0625 0.45380023546346093 1 -0.013463973999023438 3 Unmodified _EPNEVFPY_ ENSG00000145975|ENST00000274673|FAM217A 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104912.2 NaN 1253 1552 2804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2809 25.311 NaN 529410 35 0 31617 0.327 + 26024 SPEEKQEML 9 81 553.7553587536875 1105.4961645741748 2 553.7554321289062 MULTI HCD FTMS 0 0 0 2808 232071.59375 0.6741459193665564 -13 0.15391159057617188 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 117.83759599426817 0.001662893820975323 2 SPEEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 73.8 0 0 6.6757 6.6757 85.1 0 0 0 0.031528240975617905 0.031528240975617905 0.031528240975617905 0.031528240975617905 0 2.754432191740108 0 1.4528733415454713 0.28872548999643577 + + SPEEKQE{M(Oxidation (M))|F}{I|L};[PS]EEKQE{M(Oxidation (M))|F}{I|L};SPEEK[AG]E{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};SPEE[VS][QA]{M(Oxidation (M))|F}{I|L};SPEE[VS][MN]T{I|L};[PS]{[DS]|[MA]|[CV]|TT}[{I|L}A]QE{M(Oxidation (M))|F}{I|L};SP[VS]{[CP]|[EA]}QE{M(Oxidation (M))|F}{I|L};[PA]{[DS]|[MA]|[CV]|TT}{[CP]|[EA]}QE{M(Oxidation (M))|F}{I|L} 6.6757;6.6729;5.8428;5.8399;3.375;3.2603;3.0361;2.5843;0.42792 +;+;-;-;-;-;-;-;- + 1335 + NaN NaN 169298.9 NaN 1254 1553 2808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2810 25.316 NaN 46475 35 0 6552.6 0.261 -1 TAVKNDYEM 9 26 543.7422502191591 1085.4699475051182 2 543.7422485351562 MULTI HCD FTMS 0 0 0 2808 25151.79296875 0.12917810750871264 66 -0.7814483642578125 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 19.361941925380144 0.1930734562688509 2 E{M(Oxidation (M))|F} 2 -1 19.38 0 0 1.7854 0 0 791.3810902326187 0 791.3810902326187 0 3.182503180159344 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F} 1.7854 + + 7 NaN NaN 110038.4 NaN 1255 1553 2808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2811 25.319 NaN 45103 35 0 7109.9 0.261 + 1770 CLPFPFHP 8 30 479.2361828257221 NaN 0 479.23468017578125 PEAK HCD FTMS 0 0 0 2808 2072.706298828125 0.17309330591831226 -6 0.07772445678710938 3 Unmodified _CLPFPFHP_ ENST00000412716.7_1_12:51636673-51636739:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109242.4 NaN 1256 1553 2808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2813 25.325 NaN 30020 35 0 4769.9 0.411 -1 AMHPYCLP 8 26 494.7225670584073 987.4305811836147 2 494.72265625 MULTI HCD FTMS 0 0 0 2812 2046.4764404296875 0.12825384340730092 -11 0.12926483154296875 1 Carbamidomethyl (C) _AMHPYC(Carbamidomethyl (C))LP_ ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94340.5 NaN 1257 1554 2812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2815 25.333 NaN 42174 35 0 5758.3 0.411 + 12147 KKKKKKKKKSF 11 30 469.3284353438654 NaN 0 469.3278503417969 PEAK HCD FTMS 0 0 0 2814 7533.70703125 0.3727648410303432 13 -0.14381027221679688 1 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105811 NaN 1258 1555 2814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2817 25.341 NaN 42322 35 0 6661.1 0.327 + 22081 QHPAFGKTA 9 23 478.7526387585161 NaN 0 478.7375183105469 PEAK HCD FTMS 0 0 0 2816 1999.676025390625 1 0 0 1 Unmodified _QHPAFGKTA_ REV__ENST00000509132.1_1_18:3977886-3978309:-|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84238.8 NaN 1259 1556 2816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2818 25.345 NaN 14154 35 0 3715.1 0.261 + -1 IPLLFPALFM 10 15 589.338096327262 1176.6616397213238 2 589.3372802734375 MULTI HCD FTMS 0 0 0 2816 4972.7412109375 0.06537150871783243 -14 0.1588459014892578 2 Oxidation (M) _IPLLFPALFM(Oxidation (M))_ REV__ENSG00000172782|ENST00000612771|FADS6;REV__nc|ENSG00000172782|Q8N9I5-2|FADS6;REV__nc|ENSG00000172782|Q8N9I5|FADS6 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92204 NaN 1260 1556 2816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2820 25.351 NaN 34558 35 0 4733.8 0.411 -1 QPDEEPMDM 9 23 562.1994845979975 NaN 0 562.1998291015625 PEAK HCD FTMS 0 0 0 2819 7481.953125 0.5599308220667785 9 -0.10157203674316406 1 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 19.256988751693697 0.19238547928067054 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90040 NaN 1261 1557 2819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2822 25.359 NaN 128570 35 0 24356 0.326 + 8803 HINHDDPSL 9 35 524.2461301181405 1046.477707303081 2 524.2460327148438 MULTI HCD FTMS 0 0 0 2821 78889.96875 0.7565974112284994 5 -0.0568084716796875 1 Unmodified _HINHDDPSL_ ENSG00000085872|ENST00000546361|CHERP 61.60191391372663 0.015340508911304802 2 DPS{I|L} 4 5 52.295 0 0 4.9972 0 0 616.2712269513687 0 616.2712269513687 0 15.356668758921828 0 0 0 1.2302046884880937 0 0.805462187404089 0 + DPS{I|L} 4.9972 + + 80 NaN NaN 111865.2 NaN 1262 1558 2821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2823 25.363 NaN 187830 35 0 33083 0.261 + 7953 GEASRLAHY 9 42 502.251549281157 1002.488545629114 2 502.2514343261719 MULTI HCD FTMS 0 0 0 2821 85086.2578125 0.5875652963263361 -7 0.08131980895996094 2 Unmodified _GEASRLAHY_ ENSG00000124635|ENST00000339812|H2BC11;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P 24.990960013464015 0.14443998892849796 2 AHY 3 6 36.198 0 0 3.6108 0 0 613.3180436808957 0 613.3180436808957 0 15.496812376923046 0 0 0 1 0 0 0 + AHY 3.6108 + + 25 NaN NaN 111747.2 NaN 1263 1558 2821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2824 25.367 NaN 44371 35 0 8532.6 0.261 -1 ESLMTHAM 8 24 476.19857394400617 NaN 0 476.1984558105469 PEAK HCD FTMS 0 0 0 2821 10190.763671875 0.5554286890726406 40 -0.4835624694824219 3 2 Oxidation (M) _ESLM(Oxidation (M))THAM(Oxidation (M))_ ENSG00000108578|ENST00000261714|BLMH 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85605.6 NaN 1264 1558 2821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2826 25.372 NaN 55438 35 0 6424.1 0.327 -1 TTVATVMLM 9 31 491.75135503314976 981.4881571330995 2 491.7509765625 MULTI HCD FTMS 0 0 0 2825 11454.16015625 0.8488780450241049 -4 0.03930473327636719 1 Oxidation (M) _TTVATVMLM(Oxidation (M))_ ENST00000436710.5_1_9:132096435-132104149:+|nuORF;ENST00000444125.1_1_9:132099225-132104149:+|nuORF 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.731 0 0 816.4421193907152 0 816.4421193907152 0 11.047575072713157 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.731 + + 10 + NaN NaN 91886.6 NaN 1265 1559 2825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2827 25.377 NaN 18666 35 0 4004.6 0.261 + 13878 KYQDKIRNI 9 17 589.338096327262 1176.6616397213238 2 589.3389282226562 MULTI HCD FTMS 0 0 0 2825 11380.5556640625 0.14960844778543805 -11 0.12878036499023438 2 Unmodified _KYQDKIRNI_ REV__ENSG00000115677|ENST00000310931|HDLBP;REV__nc|ENSG00000115677|Q00341-2|HDLBP 1.4819007175156935 0.3397831423917744 2 KY 2 -1 20.969 0 0 1.7821 0 0 0 882.4729097955686 882.4729097955686 19.3753063169585 0 0 0 0 0 0 0 0 KY 1.7821 + + 2 + NaN NaN 96452.9 NaN 1266 1559 2825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2829 25.382 NaN 36025 35 0 4831.9 0.327 + 3503 EHYRQPLN 8 23 528.7647576161752 1055.5149622991503 2 528.7647094726562 MULTI HCD FTMS 0 0 0 2828 14832.4072265625 0.07182083405082992 27 -0.335418701171875 1 Unmodified _EHYRQPLN_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 4.75600775471527 0.5349361699807423 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93098.3 NaN 1267 1560 2828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2830 25.387 NaN 51228 35 0 9334.9 0.263 + 34031 YMSNHNMDQA 10 27 404.15899642749326 NaN 0 404.1488952636719 PEAK HCD FTMS 0 0 0 2828 3895.7119140625 0.9143436243745876 -5 0.04944610595703125 2 Unmodified _YMSNHNMDQA_ REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92328.6 NaN 1268 1560 2828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2832 25.392 NaN 158410 35 0 27520 0.326 + 12373 KPAENDVKL 9 40 507.2849287802094 1012.5553046272188 2 507.2847595214844 MULTI HCD FTMS 0 0 0 2831 109873.78125 0.9664768853535002 6 -0.06772232055664062 1 Unmodified _KPAENDVKL_ ENSG00000164332|ENST00000296786|UBLCP1 38.175570920033316 0.07371992880350783 2 VK{I|L} 3 6 32.435 0 0 3.2033 0 0 654.297024720769 0 654.297024720769 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 + VK{I|L} 3.2033 + + 18 NaN NaN 110436.3 NaN 1269 1561 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2833 25.397 NaN 31818 35 0 4996.3 0.261 + 25090 SADSAEAHSL 10 25 494.2220594436469 NaN 0 494.22174072265625 PEAK HCD FTMS 0 0 0 2831 8536.7294921875 0.6298792050919447 1 -0.013257980346679688 2 Unmodified _SADSAEAHSL_ ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3 3.2813086475875832 0.33737594360511275 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93240.9 NaN 1270 1561 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2834 25.4 NaN 52857 35 0 8253 0.261 + 11776 KEDTPVRH 8 29 491.2591052378132 980.5036575424264 2 491.2590637207031 MULTI HCD FTMS 0 0 0 2831 14003.1396484375 0.005388799735406722 153 -1.9276809692382812 3 Unmodified _KEDTPVRH_ ENSG00000180964|ENST00000372685|TCEAL8 2.302733041254933 0.5385759549224092 2 V[RH] 3 5 10.458 0 0 1.0666 0 0 570.2666102785577 0 570.2666102785577 0 10.45757490560675 0 0 0 0 0 0 0 + V[RH] 1.0666 + + 3 + NaN NaN 97806.5 NaN 1271 1561 2831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2836 25.406 NaN 45986 35 0 5675.3 0.327 -1 SADLRADAM 9 36 483.22147235319085 964.4283917731817 2 483.2210998535156 MULTI HCD FTMS 0 0 0 2835 22006.578125 0.721737350247754 6 -0.07110404968261719 1 Oxidation (M) _SADLRADAM(Oxidation (M))_ ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25910858-25911257:+|nuORF 18.373094154950223 0.20161688160436167 2 WA{M(Oxidation (M))|F} 3 -1 30.802 0 0 3.1938 0 0 542.2785511701187 0 542.2785511701187 0 4.6040937697618745 0 0 0 1 0 0 0 WA{M(Oxidation (M))|F} 3.1938 - 39 NaN NaN 101361.5 NaN 1272 1562 2835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2837 25.41 NaN 40204 35 0 9203.7 0.261 + -1 YCFYWSRRFRR 11 17 566.2804316477185 NaN 0 566.2804565429688 PEAK HCD FTMS 0 0 0 2835 1954.632568359375 0.35070804154296953 1 -0.01013946533203125 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))FYWSRRFRR_ REV__ENST00000369063.7_1_6:107040122-107067091:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84868.2 NaN 1273 1562 2835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2839 25.416 NaN 74726 35 0 11956 0.327 + 28733 TSVNTIRS 8 36 439.24061629335546 876.4666796535109 2 439.2403259277344 MULTI HCD FTMS 0 0 0 2838 24123.28515625 0.3390952694823971 -5 0.0568084716796875 1 Unmodified _TSVNTIRS_ REV__CON__Q6IFU6;REV__ENSG00000196859|ENST00000355612|KRT39 10.073929032068715 0.5196730168178844 2 {[MG]|[TS]}V 3 -1 15.458 0 0 1.7636 0 0 0 586.2950181606159 586.2950181606159 15.45757490560675 0 0 0 0 0.5 0 0 0 {[MG]|[TS]}V 1.7636 + + 4 + NaN NaN 103406.8 NaN 1274 1563 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2840 25.42 NaN 52376 35 0 11652 0.261 -1 0 28 509.7616184581208 1017.5086839830416 2 509.7615051269531 MULTI HCD FTMS 0 0 0 2838 12449.83203125 0.37432206648487437 11 -0.13896751403808594 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97293.1 NaN 1275 1563 2838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2842 25.426 NaN 40649 35 0 4556.3 0.326 + 28628 TREIEEKN 8 24 509.7616184581208 1017.5086839830416 2 509.7614440917969 MULTI HCD FTMS 0 0 0 2841 11901.87890625 0.357847069426922 12 -0.1557483673095703 1 Unmodified _TREIEEKN_ REV__ENSG00000120800|ENST00000261637|UTP20 1.844237919475145 0.5392561982033289 2 KN 2 -1 20.969 0 0 2.0608 0 0 757.36235243965 0 757.36235243965 0 20 0 0 0 0 0 0 0 KN 2.0608 + + 2 NaN NaN 94504.7 NaN 1276 1564 2841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2843 25.43 NaN 42364 35 0 6995.1 0.261 + 21130 PPHHGWSR 8 29 487.2412748283166 NaN 0 487.2508239746094 PEAK HCD FTMS 0 0 0 2841 1937.603515625 0.7435905748183987 1 -0.01326751708984375 2 Unmodified _PPHHGWSR_ ENST00000413911.1_1_2:191745560-191746172:-|nuORF 0.7936320650641473 0.38822285293237185 2 S 1 7 2.4743 0 0 0.25443 0 0 529.1942978482364 353.21860681705317 882.4129046652895 0 0 0 0 0 0 0 0 0 + S 0.25443 + + 1 + NaN NaN 110502.4 NaN 1277 1564 2841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2844 25.433 NaN 25747 35 0 8229.3 0.261 -1 QLCIYWTKCYD 11 11 498.22514937309097 NaN 0 498.2248840332031 PEAK HCD FTMS 0 0 0 2841 2184.189208984375 0.32680862308686975 1 -0.01326751708984375 3 Carbamidomethyl (C) _QLC(Carbamidomethyl (C))IYWTKCYD_ OAS1|p.Y275C|1|0.47|ENSG00000089127|chr12:112916678-112916678|A/G|missense_variant 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87234.6 NaN 1278 1564 2841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2846 25.439 NaN 646540 35 0 43481 0.327 + 26025 SPEEKQEML 9 88 553.7553587536875 1105.4961645741748 2 553.7556762695312 MULTI HCD FTMS 0 0 0 2845 316985.5625 0.9208129267543651 -1 0.01326751708984375 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 136.39213081522345 0.00021731600835925866 2 [PS]EEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 104.86 0 0 9.4852 9.4852 93.785 0 0 0 12.427104428146976 12.427104428146976 12.427104428146976 9.208187539523749 0 2.2302046884880937 1.6989700043360187 1.7898166913470483 0.3054621874040891 + + [PS]EEKQE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};SPEEKGAE{M(Oxidation (M))|F}{I|L};SPEEKQE{M(Oxidation (M))|F}{I|L};[EP]SEKQE{M(Oxidation (M))|F}{I|L};SPEEKG[MD]T{I|L};[EP]SEK[AG]E{M(Oxidation (M))|F}{I|L};[EP]ESKQE{M(Oxidation (M))|F}{I|L};[EP]TDKQE{M(Oxidation (M))|F}{I|L};SP{[NV]|[RG]}{[ET]|[MV]}AE{M(Oxidation (M))|F}{I|L} 9.4852;8.6523;8.3611;7.7483;6.4861;6.0276;5.6531;5.3259;5.1666;4.861 +;-;-;+;-;-;-;-;-;- + 3046 NaN NaN 181754.5 NaN 1279 1565 2845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2847 25.443 NaN 32813 35 0 4096.8 0.261 + 20600 PELSQVHR 8 22 483.26186626032825 964.5091795874565 2 483.26153564453125 MULTI HCD FTMS 0 0 0 2845 11516.3271484375 0.015413763796150533 53 -0.6456127166748047 2 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 4.75600775471527 0.5349361699807423 2 VHR 3 -1 18.416 0 0 1.9094 0 0 554.2709488773145 0 554.2709488773145 0 12.93182501400722 0 0 0 0 0 0 0 VHR 1.9094 + + 18 + NaN NaN 96465.7 NaN 1280 1565 2845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2848 25.447 NaN 20731 35 0 3195.4 0.261 -1 RYQIMKER 8 18 570.3017941442678 1138.5890353553355 2 570.30126953125 MULTI HCD FTMS 0 0 0 2845 4650.8720703125 0.3725417294284697 8 -0.10559272766113281 3 Oxidation (M) _RYQIM(Oxidation (M))KER_ ENSG00000129204|ENST00000574788|USP6;ENST00000357482.5_1_17:5035679-5037292:+|nuORF;nc|ENSG00000129204|P35125-3|USP6 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90577.6 NaN 1281 1565 2845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2850 25.452 NaN 46934 35 0 5368.1 0.327 -1 TAVKNDYEM 9 26 543.7422502191591 1085.4699475051182 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2849 19362.984375 0.09944713207487815 79 -0.9137363433837891 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 7.101721422024254 0.29718071671418667 2 E{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7931 0 0 791.381639549025 0 791.381639549025 0 3.2660625688767198 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.7931 + + 6 NaN NaN 88706.1 NaN 1282 1566 2849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2852 25.46 NaN 75118 35 0 10545 0.327 + 17413 LYRCMVTA 8 33 478.7378792454514 955.4612055577028 2 478.7376708984375 MULTI HCD FTMS 0 0 0 2851 50474.3671875 1 0 0 1 Unmodified _LYRCMVTA_ ENSG00000134247|ENST00000393203|PTGFRN;ENST00000496699.1_1_1:117509714-117517097:+|nuORF 7.910154910731844 0.5302565402355366 2 TA 2 6 30.217 0 0 3.1625 0 0 765.3664641784918 0 765.3664641784918 0 30.21652514092061 0 0 0 0.5 0 0.4247425010840047 0 + TA 3.1625 + + 4 NaN NaN 92539.4 NaN 1283 1567 2851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2853 25.464 NaN 65056 35 0 11306 0.261 -1 0 31 541.7466944070329 1081.4788358808657 2 541.7468872070312 MULTI HCD FTMS 0 0 0 2851 21927.95703125 0.6390620688210549 -2 0.021097183227539062 2 NaN NaN 2 {NN|[MP]|[D{I|L}]|[EV]}YS 4 -1 50.005 0 0 4.6238 0 0 0 600.2488497369749 600.2488497369749 33.80719686320084 0 0 0 0 1 2 0.3807196863200844 0 {NN|[MP]|[D{I|L}]|[EV]}YS 4.6238 - 12 + NaN NaN 88971.5 NaN 1284 1567 2851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2854 25.468 NaN 40278 35 0 7217.2 0.261 + 12148 KKKKKKKKKSF 11 23 469.3284353438654 NaN 0 469.32818603515625 PEAK HCD FTMS 0 0 0 2851 11787.2373046875 0.5832278348285773 25 -0.3100776672363281 3 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88905.2 NaN 1285 1567 2851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2855 25.471 NaN 32766 35 0 8200.8 0.261 + 8124 GLSDSLTTSTL 11 24 547.7831626893695 1093.551772445539 2 547.7833251953125 MULTI HCD FTMS 0 0 0 2851 8354.9033203125 0.5436664702022842 -2 0.021097183227539062 4 Unmodified _GLSDSLTTSTL_ STRADA|p.P332L|1|0.5|ENSG00000266173|chr17:63704446-63704446|G/A|missense_variant 1.1933415558491238 0.4136870758253112 2 R 1 11 1.5938 0 0 0.14574 0 0 564.7832310410453 369.63327966861567 934.416510709661 0 0 0 0 0 0 0 0 0 R 0.14574 - 4 + NaN NaN 86006.9 NaN 1286 1567 2851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2857 25.477 NaN 48547 35 0 6272.4 0.327 + 16449 LSQQAQLR 8 26 472.2695124818501 942.5244720305002 2 472.2687072753906 MULTI HCD FTMS 0 0 0 2856 8472.76953125 0.5589798663633337 4 -0.05440330505371094 1 Unmodified _LSQQAQLR_ ENST00000407371.1_1_6:90131981-90132104:-|nuORF 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87161.3 NaN 1287 1568 2856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2859 25.484 NaN 168350 35 0 30368 0.327 + 7954 GEASRLAHY 9 40 502.251549281157 1002.488545629114 2 502.25140380859375 MULTI HCD FTMS 0 0 0 2858 85001.015625 0.5869766542536254 4 -0.060207366943359375 1 Unmodified _GEASRLAHY_ ENSG00000124635|ENST00000339812|H2BC11;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P 24.990960013464015 0.14443998892849796 2 AHY 3 6 33.94 0 0 3.3856 0 0 613.3185902326187 0 613.3185902326187 0 15.127881306118454 0 0 0 0.9247425010840047 0 0 0 + AHY 3.3856 + + 23 NaN NaN 106968.5 NaN 1288 1569 2858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2860 25.489 NaN 43756 35 0 7756.4 0.261 + 26168 SPMMSPTPSL 10 27 524.2461301181405 1046.477707303081 2 524.245849609375 MULTI HCD FTMS 0 0 0 2858 19191.37890625 0.18405568956920118 16 -0.2152252197265625 2 Unmodified _SPMMSPTPSL_ REV__ENSG00000100207|ENST00000677622|TCF20;REV__nc|ENSG00000100207|Q9UGU0-2|TCF20 3.2813086475875832 0.45793521633868084 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88688.3 NaN 1289 1569 2858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2861 25.492 NaN 38852 35 0 5044.6 0.261 + 33153 YELLAMFV 8 30 493.2566289636382 984.4987049940764 2 493.25628662109375 MULTI HCD FTMS 0 0 0 2858 16568.984375 0.8601410484828305 -3 0.03191184997558594 3 Unmodified _YELLAMFV_ REV__ENSG00000145864|ENST00000393959|GABRB2;REV__nc|ENSG00000145864|P47870-1|GABRB2;REV__nc|ENSG00000145864|P47870-3|GABRB2;REV__nc|ENSG00000145864|P47870-4|GABRB2 0.7936320650641473 0.540814922690045 2 M 1 -1 3.0989 0 0 0.31477 0 0 704.9279480134109 145.5124453180297 850.4403933314405 0 0 0 0 0 0 0 0 0 M 0.31477 + + 1 + NaN NaN 84604 NaN 1290 1569 2858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2862 25.495 NaN 51186 35 0 7786.1 0.261 + 426 ALAELIDNS 9 27 473.24943989478044 NaN 0 473.2349548339844 PEAK HCD FTMS 0 0 0 2858 1729.481201171875 0.8999938382300348 -2 0.024288177490234375 4 Unmodified _ALAELIDNS_ ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1;SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant 2.9952420565917617 0.2807323172627736 2 AE 2 7 10.969 0 0 1.1614 0 0 184.11642021749213 557.2683545308665 741.3847747483587 0 0 0 0 0 0 0 0 0 + AE 1.1614 + + 4 + NaN NaN 94449.6 NaN 1291 1569 2858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2863 25.499 NaN 33164 35 0 5023.6 0.261 -1 QPDEEPMDM 9 19 562.1994845979975 NaN 0 562.199951171875 PEAK HCD FTMS 0 0 0 2858 10239.4423828125 0.7662944815513818 21 -0.26490020751953125 5 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 3.2813086475875832 0.27934607848455584 2 Q 1 -1 1.5938 0 0 0.142 0 0 561.6222225145513 429.6712740533813 991.2934965679326 0 0 0 0 0 0 0 0 0 Q 0.142 + + 1 + NaN NaN 101869.2 NaN 1292 1569 2858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2864 25.502 NaN 43965 35 0 10624 0.261 + 8809 HIQHSSSTV 9 32 498.24893821319426 994.4833234931885 2 498.7506408691406 MULTI HCD FTMS 0 0 0 2858 3368.18603515625 0.34641382673294924 -7 0.07875251770019531 6 Unmodified _HIQHSSSTV_ REV__ENST00000417510.5_1_17:16721458-16722199:-|nuORF;REV__ENST00000425692.6_1_17:16721458-16722262:-|nuORF 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93743.8 NaN 1293 1569 2858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2866 25.508 NaN 71463 35 0 13690 0.327 + 63 ACHYLRRRE 9 30 401.8778842771242 NaN 0 401.8780517578125 PEAK HCD FTMS 0 0 0 2865 16256.689453125 0.1618406976197041 792 -15.42730712890625 1 Unmodified _ACHYLRRRE_ REV__ENSG00000253729|ENST00000314191|PRKDC;REV__nc|ENSG00000253729|P78527-2|PRKDC 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89100.1 NaN 1294 1570 2865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2867 25.512 NaN 42215 35 0 9704.6 0.261 + -1 CPFGHCCW 8 20 562.1994845979975 NaN 0 562.1983032226562 PEAK HCD FTMS 0 0 0 2865 4808.337890625 0.3598440865495927 22 -0.26252174377441406 2 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88397 NaN 1295 1570 2865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2869 25.518 NaN 65221 35 0 7662.4 0.327 + 13010 KYIQRQQTI 9 31 589.338096327262 1176.6616397213238 2 589.3380737304688 MULTI HCD FTMS 0 0 0 2868 56200.46875 0.7388096981110062 1 -0.013339996337890625 1 Unmodified _KYIQRQQTI_ ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF 14.405379775768559 0.2358970535022398 2 KY{I|L}Q 4 5 34.553 0 0 2.9365 0 0 0 641.3386324518186 641.3386324518186 21.365006360318688 0 0 0 0 0.5 0 0 0 + KY{I|L}Q 2.9365 + + 14 + NaN NaN 87705.7 NaN 1296 1571 2868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2870 25.522 NaN 89184 35 0 12905 0.262 + 12374 KPAENDVKL 9 35 507.2849287802094 1012.5553046272188 2 507.2847595214844 MULTI HCD FTMS 0 0 0 2868 36094.01953125 0.3174919000655664 16 -0.19999122619628906 2 Unmodified _KPAENDVKL_ ENSG00000164332|ENST00000296786|UBLCP1 8.745405648335112 0.2847203663274469 2 V 1 8 11.99 0 0 1.1841 0 0 259.1911952152257 651.2746800078618 910.4658752230876 0 0 0 0 0 0.5 0 0 0 + V 1.1841 + + 4 + NaN NaN 96506 NaN 1297 1571 2868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2871 25.526 NaN 53262 35 0 11436 0.261 + 8712 HGWLFYVQ 8 31 525.2646498398204 1048.5147467464408 2 525.2645263671875 MULTI HCD FTMS 0 0 0 2868 11313.68359375 0.6545883344718498 -2 0.03341484069824219 3 Unmodified _HGWLFYVQ_ REV__ENSG00000163982|ENST00000296358|OTOP1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98193.8 NaN 1298 1571 2868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2873 25.531 NaN 34430 35 0 6026.2 0.327 + 27877 TECLEQSR 8 27 483.22147235319085 964.4283917731817 2 483.2210693359375 MULTI HCD FTMS 0 0 0 2872 13127.9580078125 0.4305502460629543 16 -0.19667625427246094 1 Unmodified _TECLEQSR_ REV__ENST00000480206.1_1_7:130040368-130041766:-|nuORF 2.0597508629832335 0.5389364538378849 2 VHR 3 -1 26.198 0 0 2.7164 0 0 554.1900932886099 0 554.1900932886099 0 26.197887582883936 0 0 0 0 0 0 0 VHR 2.7164 - 9 + NaN NaN 89205.5 NaN 1299 1572 2872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2874 25.536 NaN 25356 35 0 4470.5 0.261 + 10112 IFIPEYKKM 9 18 584.8254517659906 1167.636350598781 2 584.826171875 MULTI HCD FTMS 0 0 0 2872 8724.95703125 0.7159590808906965 3 -0.03689002990722656 2 Unmodified _IFIPEYKKM_ REV__ENST00000366603.6_1_1:235331403-235331469:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85974.9 NaN 1300 1572 2872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2875 25.539 NaN 34586 35 0 12069 0.261 + 9198 HPLHNDPNL 9 19 528.7647576161752 1055.5149622991503 2 528.7650146484375 MULTI HCD FTMS 0 0 0 2872 9691.4736328125 0.046927630077719634 39 -0.4649505615234375 3 Unmodified _HPLHNDPNL_ ENSG00000039123|ENST00000230640|MTREX 3.2813086475875832 0.32614229037259 2 C(Carbamidomethyl (C)) 1 9 2.4743 0 0 0.23441 0 0 545.2749548302035 347.1901949518188 892.4651497820223 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.23441 - 2 + NaN NaN 89123.7 NaN 1301 1572 2872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2877 25.545 NaN 92271 35 0 14761 0.327 + 26475 STVGSAISR 9 31 439.24061629335546 876.4666796535109 2 439.2403869628906 MULTI HCD FTMS 0 0 0 2876 43259.0546875 0.6080822206344915 5 -0.06417465209960938 1 Unmodified _STVGSAISR_ ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 12.872603262515298 0.2491399024913319 2 {[MG]|[TS]}VGSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 36.092 0 0 4.1179 4.1179 83.75 0 0 0 36.092437480817814 5.6424927368726046 5.6424927368726046 6.47817481888638 0 0.5 0 0 0 + + {[MG]|[TS]}VGSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MG]|[TS]}RSA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[MG]|[TS]}V{[QS]|[NT]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.1179;3.3788;2.1273 +;-;- + 38 + NaN NaN 91171.7 NaN 1302 1573 2876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2878 25.549 NaN 42260 35 0 10700 0.261 -1 0 30 508.75394513489016 1015.4933373365803 2 509.72821044921875 MULTI HCD FTMS 0 0 0 2876 1544.403076171875 0.06456869910546802 -13 0.16222000122070312 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104476 NaN 1303 1573 2876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2880 25.555 NaN 48985 35 0 7322 0.327 + 3209 EDERSLPK 8 36 487.2510785412806 972.4876041493612 2 487.2510681152344 MULTI HCD FTMS 0 0 0 2879 13895.5029296875 0.5471593540556409 1 -0.0132904052734375 1 Unmodified _EDERSLPK_ REV__ENSG00000030419|ENST00000434687|IKZF2;REV__ENST00000412444.5_1_2:213872086-213945912:-|nuORF;REV__nc|ENSG00000030419|Q9UKS7-2|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-3|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-4|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-6|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-7|IKZF2 2.0597508629832335 0.5389364538378849 2 S 1 -1 3.9794 0 0 0.4092 0 0 529.21283715893 353.21909509830317 882.4319322572333 0 0 0 0 0 0 0 0 0 S 0.4092 + + 1 + NaN NaN 87992.3 NaN 1304 1574 2879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2881 25.559 NaN 33302 35 0 5555.4 0.261 + -1 WSMACRWC 8 27 550.2171636470156 NaN 0 550.21728515625 PEAK HCD FTMS 0 0 0 2879 8891.421875 0.5801217534825849 -54 0.6119022369384766 2 Carbamidomethyl (C) _WSMAC(Carbamidomethyl (C))RWC_ REV__ENST00000355703.3_1_11:65402051-65403000:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88713.5 NaN 1305 1574 2879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2882 25.562 NaN 60260 35 0 10878 0.262 + 18839 NAEGHDPGL 9 31 455.20645837446233 908.3983638157247 2 455.2062683105469 MULTI HCD FTMS 0 0 0 2879 8281.5234375 0.769313950648688 1 -0.0132904052734375 3 Unmodified _NAEGHDPGL_ ENSG00000160953|ENST00000591337|PWWP3A;ENST00000587460.5_1_19:1358605-1376572:+|nuORF;ENST00000591433.5_1_19:1358605-1371443:+|nuORF;nc|ENSG00000160953|Q2TAK8-2|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90879.2 NaN 1306 1574 2879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2884 25.568 NaN 309610 35 0 18790 0.327 + 26026 SPEEKQEML 9 64 553.7553587536875 1105.4961645741748 2 553.7554931640625 MULTI HCD FTMS 0 0 0 2883 98761.2109375 0.28689192963848187 9 -0.11826705932617188 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 63.227496030279354 0.01306643085373406 2 EKQE{M(Oxidation (M))|F}{I|L} 6 3 45.756 0 0 4.1389 0 0 313.12666518379064 0 313.12666518379064 0 27.6072158606037 0 0 0 1.4247425010840047 0 0.566901560044258 0 + EKQE{M(Oxidation (M))|F}{I|L} 4.1389 + + 175 NaN NaN 134604.8 NaN 1307 1575 2883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2885 25.572 NaN 73415 35 0 17534 0.261 -1 LPQKGDVEM 9 30 516.7554292849487 1031.4963056366973 2 516.7551879882812 MULTI HCD FTMS 0 0 0 2883 26358.005859375 0.548524994301482 1 -0.01345062255859375 2 Oxidation (M) _LPQKGDVEM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF;ENST00000587197.1_1_19:10250720-10250849:-|nuORF;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 8.155526934196011 0.2891920862272901 2 T{M(Oxidation (M))|F} 2 -1 22.474 0 0 2.1788 0 0 765.4017754626724 0 765.4017754626724 0 -2.2184874961635614 -2.2184874961635614 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.1788 - 15 + NaN NaN 86200.2 NaN 1308 1575 2883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2886 25.576 NaN 38388 35 0 8180.8 0.261 + 20601 PELSQVHR 8 25 483.26186626032825 964.5091795874565 2 483.2615966796875 MULTI HCD FTMS 0 0 0 2883 10926.259765625 0.014624001648440218 63 -0.7358531951904297 3 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 4.75600775471527 0.5349361699807423 2 VHR 3 -1 18.416 0 0 1.9094 0 0 554.2705097144238 0 554.2705097144238 0 9.679250024847267 0 0 0 0 0 0 0 VHR 1.9094 + + 11 + NaN NaN 83445.9 NaN 1309 1575 2883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2888 25.581 NaN 128180 35 0 17101 0.327 + 26055 SPETRENAL 9 48 508.75394513489016 1015.4933373365803 2 508.7539978027344 MULTI HCD FTMS 0 0 0 2887 56744.3359375 0.39398256322955616 -5 0.06368064880371094 1 Unmodified _SPETRENAL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 26.020703789607367 0.13554323117744113 2 SPET 4 5 27.155 0 0 2.674 0 0 0 598.2957857721311 598.2957857721311 -2.1421059732441705 0 -2.1421059732441705 0 0 0.4247425010840047 0 0 0 + SPET 2.674 + + 29 + NaN NaN 106078.1 NaN 1310 1576 2887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2889 25.586 NaN 41194 35 0 5113.8 0.261 -1 TAVKNDYEM 9 24 543.7422502191591 1085.4699475051182 2 543.7423095703125 MULTI HCD FTMS 0 0 0 2887 15532.234375 0.07977262871228173 89 -1.0523033142089844 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 4.897010918128616 0.31389406404703984 2 E{M(Oxidation (M))|F} 2 -1 18.583 0 0 1.712 0 0 791.3817616193375 0 791.3817616193375 0 8.1259189508755 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.712 + + 3 NaN NaN 83246 NaN 1311 1576 2887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2890 25.589 NaN 30151 35 0 4880.6 0.261 -1 MPLHLLGC 8 20 478.7378792454514 955.4612055577028 2 478.7373352050781 MULTI HCD FTMS 0 0 0 2887 3696.525390625 0.07323569559363284 9 -0.11812973022460938 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PLHLLGC(Carbamidomethyl (C))_ ENST00000431994.5_1_16:32890029-32891910:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95060.7 NaN 1312 1576 2887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2892 25.599 NaN 53511 35 0 5125.9 0.327 -1 0 30 541.7466944070329 1081.4788358808657 2 541.7467041015625 MULTI HCD FTMS 0 0 0 2891 20014.5625 0.5832986492800137 8 -0.1007843017578125 1 NaN NaN 2 {NN|[MP]|[D{I|L}]|[EV]}YS 4 -1 34.425 0 0 3.1831 0 0 0 600.2499483697874 600.2499483697874 28.940162615404077 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}YS 3.1831 - 5 + NaN NaN 95037.7 NaN 1313 1577 2891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2893 25.603 NaN 47116 35 0 8670 0.261 + 11777 KEDTPVRH 8 27 491.2591052378132 980.5036575424264 2 491.25830078125 MULTI HCD FTMS 0 0 0 2891 9140.9267578125 0.003517684243002505 169 -2.1140823364257812 2 Unmodified _KEDTPVRH_ ENSG00000180964|ENST00000372685|TCEAL8 2.302733041254933 0.5385759549224092 2 V[RH] 3 5 10.458 0 0 1.0666 0 0 570.264504565667 0 570.264504565667 0 3.4678748622465623 0 0 0 0 0 0 0 + V[RH] 1.0666 + + 5 + NaN NaN 88817.7 NaN 1314 1577 2891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2895 25.609 NaN 208410 35 0 16964 0.327 + 9549 HRDYETATL 9 56 553.2671728507465 1104.519792768293 2 553.2673950195312 MULTI HCD FTMS 0 0 0 2894 78147.4765625 0.015303733910977372 84 -0.9959125518798828 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 22.736283301280096 0.1639198954644489 2 YEA[{I|L}T] 5 4 29.693 0 0 2.6883 0 0 509.2308521955094 0 509.2308521955094 0 8.89075625191822 0 0 0 0.8494850021680094 0 0.8494850021680094 0 YEA[{I|L}T] 2.6883 - 187 NaN NaN 111510.5 NaN 1315 1578 2894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2896 25.613 NaN 10598 35 0 3425.7 0.261 + 32544 WHSYEAAWV 9 10 574.7615239415383 NaN 0 574.7616577148438 PEAK HCD FTMS 0 0 0 2894 1296.2021484375 0.22584898769088127 -2 0.027286529541015625 2 Unmodified _WHSYEAAWV_ REV__ENSG00000171234|ENST00000305231|UGT2B7;REV__ENSG00000213759|ENST00000446444|UGT2B11 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 74697.6 NaN 1316 1578 2894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2898 25.619 NaN 122900 35 0 24035 0.327 + 25921 SPAEGSERL 9 34 473.2354408521338 944.4563287710677 2 473.2351379394531 MULTI HCD FTMS 0 0 0 2897 87361.8671875 1 0 0 1 Unmodified _SPAEGSERL_ ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant;nc|ENSG00000130479|Q66K74-2|MAP1S 40.72490554402381 0.06201705472789164 2 SPAEGSER{I|L} 9 0 + 77.546 0 0 8.2107 8.2107 97.517 0 0 0 58.9625938194564 9.137342758552691 9.137342758552691 77.54608767593865 0 1.8494850021680094 1.5228787452803376 0 0 + + SPAEGSER{I|L} 8.2107 + + 72 + NaN NaN 116280.5 NaN 1317 1579 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2899 25.623 NaN 40366 35 0 4869.6 0.261 -1 0 27 482.9332947600143 3373.4821280539 7 483.2196960449219 MULTI HCD FTMS 0 0 0 2897 13826.0556640625 0.5176459976538644 -4 0.05072593688964844 2 NaN NaN 2 AS[RP] 4 -1 9.9215 0 0 0.2941 0 0 2944.2490480751876 0 2944.2490480751876 0 2.4742501084004687 0 0 0 0 0 0 0 AS[RP] 0.2941 - 22 + NaN NaN 109205.8 NaN 1318 1579 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2900 25.627 NaN 46435 35 0 6933 0.261 -1 0 27 469.32955010576865 936.6445472783373 2 469.3285217285156 MULTI HCD FTMS 0 0 0 2897 10094.033203125 0.5269022544218073 -35 0.4132251739501953 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86675.2 NaN 1319 1579 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2901 25.63 NaN 29192 35 0 5561.2 0.261 -1 FPMPVFTLI 9 17 561.798667336187 1121.582781739174 2 561.7979125976562 MULTI HCD FTMS 0 0 0 2897 2087.2666015625 0.1569201822316037 2 -0.030849456787109375 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))FPM(Oxidation (M))PVFTLI_ MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|31|3|sense 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93765.6 NaN 1320 1579 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2902 25.633 NaN 30863 35 0 5050 0.261 + -1 VSRRMIMW 8 25 547.7831626893695 1093.551772445539 2 547.7828369140625 MULTI HCD FTMS 0 0 0 2897 6250.162109375 0.406707707070017 10 -0.1222991943359375 5 Oxidation (M) _VSRRMIM(Oxidation (M))W_ REV__ENST00000451399.5_1_6:43153996-43155469:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 90107.4 NaN 1321 1579 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2903 25.636 NaN 40403 35 0 8304.8 0.261 + 9663 HVEYEWRL 8 15 566.2813456627924 1130.5481383923848 2 566.2806396484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.5409681170271811 2 H 1 7 5.4846 0 0 0.48512 0 0 628.3215281402348 362.14536462955317 990.466892769788 0 0 0 0 0 0 0 0 0 + H 0.48512 + + 1 + NaN NaN 91716.1 NaN 1322 1579 2897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2905 25.642 NaN 77210 35 0 15024 0.327 + -1 FFTRSPFFI 9 26 401.8778842771242 NaN 0 401.87786865234375 PEAK HCD FTMS 0 0 0 2904 23607.0078125 0.23501553770250444 802 -15.821243286132812 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FFTRSPFFI_ REV__ENST00000338754.8_2_22:26921960-26922032:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95026.8 NaN 1323 1580 2904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2907 25.649 NaN 31841 35 0 5075.6 0.327 + 33684 YKNNILKER 9 13 589.338096327262 1176.6616397213238 2 589.3379516601562 MULTI HCD FTMS 0 0 0 2906 11676.306640625 0.15349638136624427 11 -0.12056922912597656 1 Unmodified _YKNNILKER_ ENSG00000162576|ENST00000309212|MXRA8;ENST00000473097.5_1_1:1288733-1289815:-|nuORF;nc|ENSG00000162576|Q9BRK3-2|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8 1.6526216038709556 0.33848895094777925 2 G 1 9 4.6041 0 0 0.39128 0 0 587.8558668715176 528.7667330377561 1116.6225999092737 0 0 0 0 0 0 0 0 0 G 0.39128 - 1 + NaN NaN 90610 NaN 1324 1581 2906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2908 25.654 NaN 40879 35 0 10821 0.261 + -1 EGGLCACPTQM 11 26 563.2221847307426 1124.429816528285 2 563.2227172851562 MULTI HCD FTMS 0 0 0 2906 3393.803466796875 0.1744238212248242 -9 0.11846542358398438 2 Oxidation (M) _EGGLCACPTQM(Oxidation (M))_ REV__ENSG00000181790|ENST00000517894|ADGRB1 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88955.3 NaN 1325 1581 2906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2910 25.659 NaN 41032 35 0 5845.6 0.327 + 29725 VDLNKSLK 8 27 458.7769873107302 915.5394216882604 2 458.77630615234375 MULTI HCD FTMS 0 0 0 2909 8833.49609375 0.43951470152503413 6 -0.06826019287109375 1 Unmodified _VDLNKSLK_ ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 7.289230182591677 0.5311777711368266 2 [DV]{I|L} 3 5 31.695 0 0 3.4619 0 0 0 585.3363741510374 585.3363741510374 31.694699959806982 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 + [DV]{I|L} 3.4619 + + 4 + NaN NaN 86792 NaN 1326 1582 2909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2911 25.664 NaN 34194 35 0 4251.9 0.261 + 30920 VRHLKLGEEP 10 18 589.338096327262 1176.6616397213238 2 589.338134765625 MULTI HCD FTMS 0 0 0 2909 4072.541259765625 0.05353750681433699 12 -0.1286296844482422 2 Unmodified _VRHLKLGEEP_ REV__ENSG00000124508|ENST00000356709|BTN2A2;REV__nc|ENSG00000124508|Q8WVV5-4|BTN2A2;REV__nc|ENSG00000124508|Q8WVV5-5|BTN2A2 1.6526216038709556 0.46655611578153744 2 T 1 -1 5.4846 0 0 0.46611 0 0 431.2501326626196 641.3393038385374 1072.589436501157 0 0 0 0 0 0 0 0 0 T 0.46611 - 3 + NaN NaN 93030.8 NaN 1327 1582 2909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2912 25.667 NaN 27622 35 0 4766.4 0.262 -1 VMYPPPYL 8 19 498.24893821319426 994.4833234931885 2 498.2488708496094 MULTI HCD FTMS 0 0 0 2909 7929.74560546875 0.49324403373472897 7 -0.08149909973144531 3 Oxidation (M) _VM(Oxidation (M))YPPPYL_ ENSG00000178562|ENST00000324106|CD28;nc|ENSG00000178562|P10747-7|CD28 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87050.5 NaN 1328 1582 2909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2913 25.671 NaN 36889 35 0 6991.5 0.261 -1 WFFLVPTM 8 26 528.7647576161752 1055.5149622991503 2 528.7644653320312 MULTI HCD FTMS 0 0 0 2909 10234.8720703125 0.04955885024360586 49 -0.5543632507324219 4 Oxidation (M) _WFFLVPTM(Oxidation (M))_ ENST00000260408.7_1_15:58889658-58889745:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89046.2 NaN 1329 1582 2909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2915 25.676 NaN 46385 35 0 11327 0.327 + 1974 DANGNSFATR 10 22 526.741552601518 1051.468552269836 2 526.7413330078125 MULTI HCD FTMS 0 0 0 2914 16440.94921875 0.7113892631997941 -4 0.05739402770996094 1 Unmodified _DANGNSFATR_ ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENST00000470671.1_1_X:71475533-71493153:-|nuORF 4.189502756095605 0.45312800054222196 2 WN 2 9 19.464 0 0 1.8511 0 0 0 748.3361910455686 748.3361910455686 19.463950151760656 0 0 0 0 0 0 0 0 WN 1.8511 - 3 + NaN NaN 86225.2 NaN 1330 1583 2914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2916 25.681 NaN 47181 35 0 9299.7 0.261 + 27882 TEEAQRRRM 9 18 588.7985922657789 1175.5826315983577 2 588.786865234375 MULTI HCD FTMS 0 0 0 2914 14609.826171875 0.46214432049583837 -7 0.09466934204101562 2 Unmodified _TEEAQRRRM_ EIF5|p.A310Pfs*13|1|0.09|ENSG00000100664|chr14:103339654-103339654|A/-|frameshift_variant;ENSG00000100664|ENST00000216554|EIF5 4.3292370932331545 0.3181982124262546 2 Y 1 9 1.5938 0 0 0.13557 0 0 600.3467440024577 409.13669763736567 1009.4834416398235 0 0 0 0 0 0 0 0 0 Y 0.13557 - 1 + NaN NaN 96074 NaN 1331 1583 2914 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2918 25.686 NaN 41126 35 0 8969.1 0.327 -1 CYRACFRQCV 10 23 454.8670762431583 NaN 0 454.86712646484375 PEAK HCD FTMS 0 0 0 2917 9965.3994140625 0.5264604904249791 35 -0.4063682556152344 1 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94812.1 NaN 1332 1584 2917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2919 25.691 NaN 23652 35 0 5657.2 0.261 + 20660 PFKHLILII 9 17 547.3609204687822 NaN 0 547.2581176757812 PEAK HCD FTMS 0 0 0 2917 2120.7236328125 1 0 0 2 Unmodified _PFKHLILII_ REV__ENSG00000059588|ENST00000040877|TARBP1;REV__ENST00000463793.1_1_1:234546169-234556549:-|nuORF;REV__TARBP1|p.Q1224E|1|0.18|ENSG00000059588|chr1:234418119-234418119|G/C|missense_variant 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83951.9 NaN 1333 1584 2917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2920 25.694 NaN 10781 35 0 2459.7 0.261 + -1 DCHMREELI 9 11 601.7667846679688 NaN 0 601.7667846679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _DC(Carbamidomethyl (C))HMREELI_ REV__ENSG00000163629|ENST00000411767|PTPN13;REV__nc|ENSG00000163629|Q12923-2|PTPN13;REV__nc|ENSG00000163629|Q12923-3|PTPN13;REV__nc|ENSG00000163629|Q12923-4|PTPN13 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84291.9 NaN 1334 1584 2917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2922 25.7 NaN 31335 35 0 6034.2 0.327 + 4293 EVNQETIQR 9 25 558.7856276120734 1115.5567022909468 2 558.7861938476562 MULTI HCD FTMS 0 0 0 2921 11311.931640625 0.46669122183193246 -4 0.05000495910644531 1 Unmodified _EVNQETIQR_ ENSG00000008324|ENST00000011691|SS18L2 5.731851221503515 0.3075653528928475 2 E[{I|L}T]QR 5 4 22.218 0 0 1.9917 0 0 470.2106462380155 0 470.2106462380155 0 22.21848749616356 0 0 0 0 0 0 0 + E[{I|L}T]QR 1.9917 + + 16 + NaN NaN 90903.5 NaN 1335 1585 2921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2923 25.704 NaN 49327 35 0 11015 0.261 + 9664 HVEYEWRL 8 15 566.2813456627924 1130.5481383923848 2 566.2813110351562 MULTI HCD FTMS 0 0 0 2921 9664.1669921875 0.7302890684007647 -5 0.05761146545410156 2 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92912.1 NaN 1336 1585 2921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2925 25.71 NaN 235430 35 0 14365 0.411 + 26056 SPETRENAL 9 83 508.75394513489016 1015.4933373365803 2 508.75396728515625 MULTI HCD FTMS 0 0 0 2924 96514.9296875 0.6701144486047698 5 -0.05282020568847656 1 Unmodified _SPETRENAL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 100.0907132914201 0.004261551473353346 2 SPET 4 5 38.906 0 0 3.8312 0 0 0 598.2958291664678 598.2958291664678 -1.249387366082999 0 -1.249387366082999 0 0 0.7134679910804405 1.3010299956639813 0 0 + SPET 3.8312 + + 291 + NaN NaN 154547.8 NaN 1337 1586 2924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2927 25.718 NaN 40428 35 0 5652.9 0.327 -1 QAVQDNPAM 9 27 495.22117453842026 988.4277961436405 2 495.220703125 MULTI HCD FTMS 0 0 0 2926 5456.9326171875 0.17417149070363125 -14 0.17319869995117188 1 Oxidation (M) _QAVQDNPAM(Oxidation (M))_ ENSG00000137752|ENST00000533400|CASP1;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENST00000528424.1_1_11:104901858-104905058:-|nuORF;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000204397|Q5EG05|CARD16 3.5964929083625545 0.32375295897743744 2 H 1 -1 9.732 0 0 0.98459 0 0 196.08204526649052 652.2718599908811 848.3539052573717 0 0 0 0 0 0.4247425010840047 0 0 0 H 0.98459 - 2 + NaN NaN 85547.6 NaN 1338 1587 2926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2928 25.722 NaN 10367 35 0 3131.6 0.261 + 14320 LDMNGEELGPE 11 11 602.2636678610305 1202.512782788861 2 602.7655029296875 MULTI HCD FTMS 0 0 0 2926 3192.560546875 0.5264387491455307 -13 0.16305160522460938 2 Unmodified _LDMNGEELGPE_ REV__ENSG00000139971|ENST00000267485|ARMH4;REV__nc|ENSG00000139971|Q86TY3-3|ARMH4 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86739.6 NaN 1339 1587 2926 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2930 25.728 NaN 150920 35 0 12529 0.327 + 9550 HRDYETATL 9 44 553.2671728507465 1104.519792768293 2 553.2672729492188 MULTI HCD FTMS 0 0 0 2929 66361.125 0.012995595554782673 94 -1.1330223083496094 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 21.536976647645854 0.1742816388551942 2 YEAT{I|L} 5 4 36.899 0 0 3.3407 0 0 509.23216445136876 0 509.23216445136876 0 15.445312593723983 0 0 0 0.4247425010840047 0 1 0 YEAT{I|L} 3.3407 - 98 NaN NaN 120313.4 NaN 1340 1588 2929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2931 25.732 NaN 44457 35 0 6762.6 0.261 + -1 GNSEYLEKM 9 26 543.7422502191591 1085.4699475051182 2 543.7421264648438 MULTI HCD FTMS 0 0 0 2929 15299.7080078125 0.07857838716868772 101 -1.2382793426513672 2 Oxidation (M) _GNSEYLEKM(Oxidation (M))_ REV__chr1:200575691-200580254|487|14.69|0.77|4.25|-|0|KIF14,KIF14|1;REV__ENSG00000118193|ENST00000367350|KIF14 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 -1 17.012 0 0 1.5672 0 0 920.4239097627338 0 920.4239097627338 0 17.01163485412895 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.5672 + + 3 + NaN NaN 88971.1 NaN 1341 1588 2929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2932 25.736 NaN 41351 35 0 11822 0.261 -1 QTMDLAMQI 9 24 541.7466944070329 1081.4788358808657 2 541.732177734375 MULTI HCD FTMS 0 0 0 2929 3738.82861328125 0.1089633450651954 19 -0.2312908172607422 3 2 Oxidation (M) _QTM(Oxidation (M))DLAM(Oxidation (M))QI_ ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1;PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant 3.5964929083625545 0.32375295897743744 2 D 1 -1 4.6041 0 0 0.42572 0 0 590.3114297302783 373.1179293268188 963.4293590570971 0 0 0 0 0 0 0 0 0 D 0.42572 + + 2 + NaN NaN 88008.5 NaN 1342 1588 2929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2934 25.741 NaN 37044 35 0 6055.6 0.411 -1 EADMNIFED 9 27 550.2171636470156 NaN 0 550.216552734375 PEAK HCD FTMS 0 0 0 2933 11696.505859375 0.7631397524661885 -39 0.48003578186035156 1 Oxidation (M) _EADM(Oxidation (M))NIFED_ ENSG00000113141|ENST00000417647|IK 3.944395688203298 0.27613285122220627 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100038.9 NaN 1343 1589 2933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2936 25.749 NaN 34945 35 0 4368.3 0.327 -1 0 24 482.9332947600143 3373.4821280539 7 483.21978759765625 MULTI HCD FTMS 0 0 0 2935 15849.61328125 0.5934077714388339 7 -0.08308601379394531 1 NaN NaN 2 AAS[RP] 5 -1 17.447 0 0 0.51719 0 0 2873.2119081826095 0 2873.2119081826095 0 9.999999999999998 0 0 0 0 0 0 0 AAS[RP] 0.51719 - 24 + NaN NaN 87794.3 NaN 1344 1590 2935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2937 25.754 NaN 35394 35 0 5553.3 0.261 + -1 NYCTKSCMM 9 20 409.48113727428597 1225.421582423058 3 409.4815979003906 MULTI HCD FTMS 0 0 0 2935 8237.609375 0.2556682912848555 -6 0.06298828125 2 2 Carbamidomethyl (C),2 Oxidation (M) _NYC(Carbamidomethyl (C))TKSC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000100473|ENST00000396618|COCH;REV__nc|ENSG00000100473|O43405-2|COCH 0.9622753412299311 0.3437222896773173 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2636 0 0 1060.3759566679782 0 1060.3759566679782 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2636 + + 4 + NaN NaN 82758.7 NaN 1345 1590 2935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2938 25.757 NaN 44255 35 0 7849.6 0.261 -1 0 17 469.32955010576865 936.6445472783373 2 469.3284606933594 MULTI HCD FTMS 0 0 0 2935 11200.138671875 0.5846402718608854 -24 0.2968120574951172 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86328.9 NaN 1346 1590 2935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2940 25.763 NaN 46846 35 0 8657.2 0.327 -1 EDAGSYRCE 9 25 543.7115159071733 1085.4084788811465 2 543.7114868164062 MULTI HCD FTMS 0 0 0 2939 7167.521484375 0.36477883331678307 -16 0.1945343017578125 1 Carbamidomethyl (C) _EDAGSYRC(Carbamidomethyl (C))E_ ENSG00000182264|ENST00000332955|IZUMO1 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 93784.3 NaN 1347 1591 2939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2942 25.77 NaN 49874 35 0 6458 0.327 + -1 GEEMMMDPI 9 30 550.7012357595448 1099.3879185858896 2 550.7014770507812 MULTI HCD FTMS 0 0 0 2941 7898.37841796875 0.46922119721454103 -12 0.1281757354736328 1 3 Oxidation (M) _GEEM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))DPI_ REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF 4.3292370932331545 0.3181982124262546 2 M 1 -1 0.71334 0 0 0.064885 0 0 634.1978989099115 331.12641321353755 965.3243121234491 0 0 0 0 0 0 0 0 0 M 0.064885 + + 7 + NaN NaN 100281.9 NaN 1348 1592 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2943 25.774 NaN 42376 35 0 9421 0.261 -1 QCSQPVLPC 9 25 544.7444032236233 NaN 0 544.7996215820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))SQPVLPC(Carbamidomethyl (C))_ ENST00000564068.1_1_15:75630375-75630672:+|nuORF;ENST00000568034.1_1_15:75628478-75630672:+|nuORF 4.75600775471527 0.27219989241163056 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95262.5 NaN 1349 1592 2941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2945 25.78 NaN 38722 35 0 5166.8 0.411 + 8533 HAIEDKETI 9 47 528.2722104124309 1054.5298678916618 2 528.271728515625 MULTI HCD FTMS 0 0 0 2944 18597.892578125 0.8664567918175197 -2 0.0175323486328125 1 Unmodified _HAIEDKETI_ ENSG00000160633|ENST00000588852|SAFB;ENST00000586934.5_1_19:5623180-5651054:+|nuORF;ENST00000590485.1_1_19:5641888-5648065:+|nuORF;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 28.494509381512117 0.11816142465008336 2 [HA]{I|L}EDKET{I|L} 9 0 + 29.956 0 0 2.8407 2.8407 81.951 0 0 0 4.5648562984455765 4.5648562984455765 4.5648562984455765 4.5648562984455765 0 1.211758134947864 0 0.4247425010840047 0 + + [HA]{I|L}EDKET{I|L};HA{I|L}[WP]{[MS]|[{M(Oxidation (M))|F}A]}T{I|L};H{I|L}A[WP]{[MS]|[{M(Oxidation (M))|F}A]}T{I|L};[HA]{[QN]|[E{I|L}]|[KN]}D[PA][R{M(Oxidation (M))|F}] 2.8407;2.4078;1.6482;0.7228 +;-;-;- + 96 NaN NaN 90710.4 NaN 1350 1593 2944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2947 25.788 NaN 58750 35 0 13628 0.327 + 4111 ESVDPKNYPK 10 26 588.7985922657789 1175.5826315983577 2 588.7982788085938 MULTI HCD FTMS 0 0 0 2946 27400.400390625 0.8667412788398806 4 -0.054340362548828125 1 Unmodified _ESVDPKNYPK_ ENSG00000125538|ENST00000263341|IL1B;ENST00000491056.5_1_2:113587940-113590763:-|nuORF 13.042465956692817 0.38911719078024076 2 D 1 9 9.732 0 0 0.82784 0 0 315.14392417823893 742.3886052951701 1057.532529473409 0 0 0 0 0 0.4247425010840047 0 0 0 + D 0.82784 + + 8 + NaN NaN 96265.6 NaN 1351 1594 2946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2948 25.792 NaN 56403 35 0 8872.6 0.261 -1 TAVKNDYEM 9 26 543.7422502191591 1085.4699475051182 2 543.7423706054688 MULTI HCD FTMS 0 0 0 2946 15037.20703125 0.07723019782037113 107 -1.3578433990478516 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 5.296884461304476 0.3108627248283497 2 V[PG] 3 -1 9.437 0 0 0.86939 0 0 814.3198109357437 0 814.3198109357437 0 9.436974992327125 0 0 0 0.3494850021680094 0 0 0 V[PG] 0.86939 - 5 NaN NaN 89647.5 NaN 1352 1594 2946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2949 25.796 NaN 33240 35 0 5590.4 0.261 + -1 HCEHQEYP 8 22 550.2171636470156 NaN 0 550.2166748046875 PEAK HCD FTMS 0 0 0 2946 13766.6953125 0.8982094806234782 -34 0.40581321716308594 3 Carbamidomethyl (C) _HC(Carbamidomethyl (C))EHQEYP_ REV__ENSG00000165029|ENST00000374736|ABCA1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76452.8 NaN 1353 1594 2946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2950 25.799 NaN 21145 35 0 3232.9 0.263 + 9563 HRNRGNGFRV 10 21 404.88822709555643 1211.6428518868693 3 404.88702392578125 MULTI HCD FTMS 0 0 0 2946 6068.578125 0.6522123675536569 5 -0.07090187072753906 4 Unmodified _HRNRGNGFRV_ REV__ENST00000482253.5_1_1:97187284-97189128:+|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81671.4 NaN 1354 1594 2946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2951 25.803 NaN 21568 35 0 3923.4 0.261 + -1 WFCPPSSF 8 17 514.2201962550104 1026.4258395768206 2 514.219970703125 MULTI HCD FTMS 0 0 0 2946 9944.9892578125 0.5349409644252696 -5 0.047130584716796875 5 Carbamidomethyl (C) _WFC(Carbamidomethyl (C))PPSSF_ REV__ENST00000360862.9_2_16:3534964-3535998:+|nuORF;REV__ENST00000407558.8_1_16:3534861-3535998:+|nuORF 4.75600775471527 0.5349361699807423 2 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5301 0 0 774.3179188459 0 774.3179188459 0 25.969100130080562 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.5301 + + 2 NaN NaN 102472.8 NaN 1355 1594 2946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2952 25.806 NaN 30695 35 0 11581 0.261 -1 TTIFQQMY 8 21 524.2460623993746 NaN 0 524.2456665039062 PEAK HCD FTMS 0 0 0 2946 2165.366455078125 0.27078625134067474 7 -0.08718490600585938 6 Oxidation (M) _TTIFQQM(Oxidation (M))Y_ ENSG00000140015|ENST00000322893|KCNH5;ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;nc|ENSG00000143473|O95259-2|KCNH1 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93450.2 NaN 1356 1594 2946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2954 25.811 NaN 27496 35 0 5885.5 0.327 + -1 NYQFMYPM 8 17 563.2221847307426 1124.429816528285 2 563.2224731445312 MULTI HCD FTMS 0 0 0 2953 8152.56884765625 0.4189995752903078 5 -0.05585479736328125 1 2 Oxidation (M) _NYQFM(Oxidation (M))YPM(Oxidation (M))_ REV__ENST00000438477.2_1_1:120039232-120039448:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97115.1 NaN 1357 1595 2953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2956 25.819 NaN 34749 35 0 4524 0.327 + 4294 EVNQETIQR 9 26 558.7856276120734 1115.5567022909468 2 558.785400390625 MULTI HCD FTMS 0 0 0 2955 12806.1640625 0.528338089654341 7 -0.08968925476074219 1 Unmodified _EVNQETIQR_ ENSG00000008324|ENST00000011691|SS18L2 8.155526934196011 0.2891920862272901 2 ET{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 5 4 16.198 0 0 1.452 0 0 470.2104020973905 0 470.2104020973905 0 11.593793813122062 0 0 0 0 0 0 0 + ET{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 1.452 + + 20 + NaN NaN 88473.1 NaN 1358 1596 2955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2957 25.823 NaN 130940 35 0 18266 0.261 + -1 TPHTDRQI 8 34 505.25658233440697 1008.498611735614 2 505.2563781738281 MULTI HCD FTMS 0 0 0 2955 23914.373046875 0.3699628120289411 -5 0.05651283264160156 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TPHTDRQI_ REV__ENST00000227758.6_3_11:102220404-102220434:+|nuORF 4.75600775471527 0.5349361699807423 2 Q 1 -1 6.9897 0 0 0.69308 0 0 148.11672541008937 729.3024386041624 877.4191640142517 0 0 0 0 0 0 0 0 0 Q 0.69308 + + 2 + NaN NaN 98990.7 NaN 1359 1596 2955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2958 25.827 NaN 31510 35 0 9712.4 0.261 + -1 VAMMWGMH 8 22 497.70216565390785 NaN 0 497.70196533203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Oxidation (M) _VAM(Oxidation (M))MWGM(Oxidation (M))H_ REV__ENSG00000198763|ENST00000361453|MT-ND2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87955 NaN 1360 1596 2955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2960 25.832 NaN 23052 35 0 4417.9 0.327 + -1 YSKIKEMM 8 20 531.2540838471556 1060.493614761111 2 531.2538452148438 MULTI HCD FTMS 0 0 0 2959 8330.6669921875 0.6477511147099803 4 -0.042999267578125 1 2 Oxidation (M) _YSKIKEM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000147601|ENST00000276603|TERF1;REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF;REV__nc|ENSG00000147601|P54274-2|TERF1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2352 0 0 895.4475922775158 0 895.4475922775158 0 13.098943791441968 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2352 + + 1 + NaN NaN 90577.3 NaN 1361 1597 2959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2961 25.837 NaN 41686 35 0 9403.8 0.261 + 12001 KGDFTYYCN 9 23 555.7308373846566 NaN 0 555.734619140625 PEAK HCD FTMS 0 0 0 2959 2040.37744140625 0.36359781717386735 -5 0.06219673156738281 2 Unmodified _KGDFTYYCN_ REV__ENSG00000067704|ENST00000366922|IARS2 1.4819007175156935 0.28806575819904134 2 D 1 -1 6.9897 0 0 0.63002 0 0 185.11870494333817 806.2781466119749 991.3968515553131 0 0 0 0 0 0 0 0 0 D 0.63002 + + 3 + NaN NaN 90812.2 NaN 1362 1597 2959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2963 25.842 NaN 73268 35 0 6508.8 0.327 -1 QAVQDNPAM 9 35 495.22117453842026 988.4277961436405 2 495.2209167480469 MULTI HCD FTMS 0 0 0 2962 22954.716796875 0.7326565167029676 -3 0.031068801879882812 1 Oxidation (M) _QAVQDNPAM(Oxidation (M))_ ENSG00000137752|ENST00000533400|CASP1;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENST00000528424.1_1_11:104901858-104905058:-|nuORF;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000204397|Q5EG05|CARD16 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2247 0 0 823.3822314237171 0 823.3822314237171 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2247 + + 7 + NaN NaN 98470.4 NaN 1363 1598 2962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2964 25.847 NaN 15826 35 0 5794.2 0.261 -1 PCPWPHLCH 9 13 602.2636678610305 1202.512782788861 2 602.2633056640625 MULTI HCD FTMS 0 0 0 2962 5722.72705078125 0.3907327668978496 1 -0.016561508178710938 2 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))PWPHLC(Carbamidomethyl (C))H_ ENST00000339381.5_1_1:1268919-1269807:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87105.2 NaN 1364 1598 2962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2965 25.85 NaN 36678 35 0 8308.7 0.261 + 579 APEFLESLEP 10 23 566.2813456627924 1130.5481383923848 2 566.2808837890625 MULTI HCD FTMS 0 0 0 2962 4902.2841796875 0.37044936718435506 8 -0.10644721984863281 3 Unmodified _APEFLESLEP_ ENSG00000143554|ENST00000624995|SLC27A3;ENST00000483574.6_1_1:153748462-153750656:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF;nc|ENSG00000143554|Q5K4L6-2|SLC27A3 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86600.9 NaN 1365 1598 2962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2966 25.854 NaN 19087 35 0 4635.7 0.261 + -1 EVRHALLRDC 10 20 634.8285522460938 NaN 0 634.8285522460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _EVRHALLRDC(Carbamidomethyl (C))_ REV__ENSG00000107937|ENST00000360803|GTPBP4;REV__nc|ENSG00000107937|Q9BZE4-2|GTPBP4;REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102696.5 NaN 1366 1598 2962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2968 25.859 NaN 148440 35 0 11753 0.411 + 9551 HRDYETATL 9 60 553.2671728507465 1104.519792768293 2 553.2672119140625 MULTI HCD FTMS 0 0 0 2967 59140.15234375 0.011581501984898653 105 -1.31854248046875 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 21.536976647645854 0.1742816388551942 2 HAHEAT{I|L} 7 4 43.612 0 0 3.9485 0 0 327.1410389630875 0 327.1410389630875 0 12.509716596306014 0 0 0 0.6747425010840047 0 1.4247425010840047 0 HAHEAT{I|L} 3.9485 - 493 NaN NaN 140935.4 NaN 1367 1599 2967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2970 25.867 NaN 24137 35 0 5281.8 0.411 + -1 CPFGHCCW 8 23 562.1994845979975 NaN 0 562.1995849609375 PEAK HCD FTMS 0 0 0 2969 1936.5894775390625 0.1449295551640228 50 -0.5699691772460938 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90425.2 NaN 1368 1600 2969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2972 25.875 NaN 28140 35 0 5007.2 0.327 + 20602 PELSQVHR 8 25 483.26186626032825 964.5091795874565 2 483.261962890625 MULTI HCD FTMS 0 0 0 2971 3607.61962890625 0.004828535704967513 89 -1.1108474731445312 1 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 2.302733041254933 0.5385759549224092 2 V[RH] 3 -1 10.458 0 0 1.0842 0 0 554.2719797356972 0 554.2719797356972 0 4.9730248405664685 0 0 0 0 0 0 0 V[RH] 1.0842 + + 4 + NaN NaN 85339.9 NaN 1369 1601 2971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2973 25.88 NaN 22783 35 0 5046.6 0.261 -1 0 10 497.75111352008196 993.4876741069639 2 498.2486267089844 MULTI HCD FTMS 0 0 0 2971 1300.232421875 0.10729480715690898 -10 0.11280632019042969 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79677.4 NaN 1370 1601 2971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2974 25.883 NaN 30935 35 0 8563.7 0.261 + -1 VYMHFLYC 8 14 546.2375601978299 1090.4605674624597 2 546.2374877929688 MULTI HCD FTMS 0 0 0 2971 5384.587890625 0.39829284635501616 -5 0.056293487548828125 3 Oxidation (M) _VYM(Oxidation (M))HFLYC_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__nc|ENSG00000198838|Q15413-2|RYR3 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89876.7 NaN 1371 1601 2971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2976 25.889 NaN 68122 35 0 10855 0.327 -1 LYTLYFRW 8 26 401.8778842771242 NaN 0 401.8777160644531 PEAK HCD FTMS 0 0 0 2975 15015.9609375 0.14948883661476803 824 -16.689054489135742 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LYTLYFRW_ ENST00000489185.1_1_1:62941462-62941510:-|nuORF 0.6903765706972694 0.38822285293237185 2 K 1 -1 3.0989 0 0 0.38653 0 0 472.54143032007033 198.07703577213127 670.6184660922016 0 0 0 0 0 0 0 0 0 K 0.38653 - 1 + NaN NaN 95092.9 NaN 1372 1602 2975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2977 25.893 NaN 34605 35 0 6259.5 0.261 -1 0 20 469.32955010576865 936.6445472783373 2 469.3283996582031 MULTI HCD FTMS 0 0 0 2975 15798.435546875 0.8246685084619065 -12 0.1393585205078125 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111146.4 NaN 1373 1602 2975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2978 25.897 NaN 29349 35 0 4159.3 0.261 + 12597 KTYVRQQQ 8 23 525.7882847075902 1049.5620164819802 2 525.7883911132812 MULTI HCD FTMS 0 0 0 2975 7668.16015625 0.733895636140411 -3 0.0295562744140625 3 Unmodified _KTYVRQQQ_ ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;ENST00000486708.1_1_22:31924838-31946432:+|nuORF;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1 2.0597508629832335 0.5389364538378849 2 KT 2 6 20.969 0 0 1.9979 0 0 0 817.3968599908811 817.3968599908811 20.969100130080562 0 0 0 0 0 0 0 0 + KT 1.9979 + + 1 + NaN NaN 101808.8 NaN 1374 1602 2975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2979 25.9 NaN 30315 35 0 4967 0.261 + -1 LMLGMHKPAF 10 20 588.7985922657789 1175.5826315983577 2 588.7870483398438 MULTI HCD FTMS 0 0 0 2975 9748.8115234375 0.3083786093098199 12 -0.14577102661132812 4 2 Oxidation (M) _LM(Oxidation (M))LGM(Oxidation (M))HKPAF_ REV__ENSG00000085415|ENST00000399892|SEH1L;REV__nc|ENSG00000085415|Q96EE3|SEH1L 3.5964929083625545 0.45626689593999237 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46654 0 0 430.23181480323893 595.2955552770943 1025.5273700803332 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46654 + + 1 + NaN NaN 105064.5 NaN 1375 1602 2975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2980 25.903 NaN 35196 35 0 9964.7 0.263 + 21018 PLPLHPWC 8 23 481.7487201843082 NaN 0 481.74884033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PLPLHPWC_ REV__ENST00000376888.6_1_6:29625018-29635699:+|nuORF;REV__ENST00000483013.5_1_6:29625018-29638487:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91311.2 NaN 1376 1602 2975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2982 25.909 NaN 94616 35 0 20506 0.327 -1 MPVHAAVQM 9 45 508.2385379470051 1014.4625229608102 2 508.23828125 MULTI HCD FTMS 0 0 0 2981 16311.419921875 0.4201833694578108 11 -0.12564849853515625 1 2 Oxidation (M) _M(Oxidation (M))PVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 18.13498045792455 0.20367413111508956 2 VQ{M(Oxidation (M))|F} 3 -1 34.693 0 0 3.4198 0 0 622.2926502912125 0 622.2926502912125 0 28.1259189508755 0 0 0 0.8494850021680094 0 0 0 VQ{M(Oxidation (M))|F} 3.4198 + + 15 NaN NaN 97478.1 NaN 1377 1603 2981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2983 25.913 NaN 43768 35 0 10507 0.261 -1 TLCVLLECL 9 15 532.2802519852686 1062.545951037337 2 532.2803955078125 MULTI HCD FTMS 0 0 0 2981 22450.1484375 1 0 0 2 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))VLLECL_ DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11 1.844237919475145 0.33703635659052655 2 E{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.9842 0 0 699.3930474634237 0 699.3930474634237 0 10.45757490560675 0 0 0 0 0 0 0 E{[ES]|[DT]|[{I|L}C]} 0.9842 + + 1 NaN NaN 90905.1 NaN 1378 1603 2981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2984 25.917 NaN 55181 35 0 10969 0.261 -1 EDAGSYRCE 9 25 543.7115159071733 1085.4084788811465 2 543.7119140625 MULTI HCD FTMS 0 0 0 2981 12145.0107421875 0.6180996958031812 -4 0.049678802490234375 3 Carbamidomethyl (C) _EDAGSYRC(Carbamidomethyl (C))E_ ENSG00000182264|ENST00000332955|IZUMO1 3.944395688203298 0.32111559684428237 2 E 1 -1 5.4846 0 0 0.5053 0 0 164.98741062118398 788.3610323541624 953.3484429753464 0 0 0 0 0 0 0 0 0 E 0.5053 + + 4 + NaN NaN 89833.9 NaN 1379 1603 2981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2986 25.922 NaN 24066 35 0 2983.6 0.327 + -1 YCERCEYM 8 16 409.48113727428597 1225.421582423058 3 409.48162841796875 MULTI HCD FTMS 0 0 0 2985 12250.47265625 0.3802143642499779 8 -0.08730506896972656 1 2 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))ERC(Carbamidomethyl (C))EYM(Oxidation (M))_ REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;REV__ENSG00000083799|ENST00000427738|CYLD;REV__nc|ENSG00000083799|Q9NQC7-2|CYLD 0.45834013312273997 0.5413123763662464 2 P 1 -1 1.5938 0 0 0.13006 0 0 973.8388930693455 151.50655542545158 1125.3454484947972 0 0 0 0 0 0 0 0 0 P 0.13006 - 1 + NaN NaN 86778.1 NaN 1380 1604 2985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2987 25.927 NaN 50876 35 0 10677 0.261 + 1640 CARAFLWQ 8 19 497.75111352008196 993.4876741069639 2 498.2519226074219 MULTI HCD FTMS 0 0 0 2985 1721.8232421875 0.14208436093478075 -7 0.08985328674316406 2 Unmodified _CARAFLWQ_ REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98697.9 NaN 1381 1604 2985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2989 25.932 NaN 24961 35 0 6047.2 0.327 + -1 WFCPPSSF 8 14 514.2201962550104 1026.4258395768206 2 514.2202758789062 MULTI HCD FTMS 0 0 0 2988 10852.1181640625 0.5837354275853186 6 -0.06370735168457031 1 Carbamidomethyl (C) _WFC(Carbamidomethyl (C))PPSSF_ REV__ENST00000360862.9_2_16:3534964-3535998:+|nuORF;REV__ENST00000407558.8_1_16:3534861-3535998:+|nuORF 5.230669730166228 0.5342319408533849 2 S{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.3834 0 0 774.3113880841812 0 774.3113880841812 0 24.463950151760656 0 0 0 0.3494850021680094 0 0 0 S{M(Oxidation (M))|F} 2.3834 + + 2 NaN NaN 88464.3 NaN 1382 1605 2988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2990 25.937 NaN 17925 35 0 5996.3 0.261 -1 HDECTPQQTM 10 17 624.2362368957075 NaN 0 624.236572265625 PEAK HCD FTMS 0 0 0 2988 8871.9716796875 0.6966974334025386 -53 0.6346302032470703 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97115 NaN 1383 1605 2988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2991 25.94 NaN 28019 35 0 4934.4 0.261 -1 PCEWTEHC 8 18 559.7062548917502 NaN 0 559.70654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))EWTEHC(Carbamidomethyl (C))_ ENST00000521264.5_1_5:151125585-151125774:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89494.4 NaN 1384 1605 2988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2992 25.943 NaN 35641 35 0 8838.6 0.261 + 11763 KDSLVKVAP 9 23 478.7924546158407 955.5703562984814 2 478.7920837402344 MULTI HCD FTMS 0 0 0 2988 4561.62841796875 0.18714806376525867 -9 0.11330604553222656 4 Unmodified _KDSLVKVAP_ ENSG00000255587|ENST00000612677|RAB44 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91081.6 NaN 1385 1605 2988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2994 25.949 NaN 160640 35 0 21428 0.327 + 16278 LQNEHQQL 8 40 505.25658233440697 1008.498611735614 2 505.256591796875 MULTI HCD FTMS 0 0 0 2993 41942.9453125 0.6488704496736247 5 -0.04711723327636719 1 Unmodified _LQNEHQQL_ ENSG00000056487|ENST00000313237|PHF21B;nc|ENSG00000056487|Q96EK2-3|PHF21B;nc|ENSG00000056487|Q96EK2-4|PHF21B 26.88365393820708 0.39599352634412927 2 QQ{I|L} 3 5 29.297 0 0 2.905 0 0 621.2845326154312 0 621.2845326154312 0 22.307131330965717 0 0 0 0 0 0 0.7614393726401688 + QQ{I|L} 2.905 + + 8 NaN NaN 111530.6 NaN 1386 1606 2993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2995 25.953 NaN 72109 35 0 11279 0.261 -1 MGTDPEPAM 9 30 490.688689058297 979.362825183394 2 490.6888732910156 MULTI HCD FTMS 0 0 0 2993 10794.65625 0.680494242805631 4 -0.03383445739746094 2 2 Oxidation (M) _M(Oxidation (M))GTDPEPAM(Oxidation (M))_ ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL-WDR70|1|fusion;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4912 0 0 814.3169247701112 0 814.3169247701112 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4912 + + 3 + NaN NaN 93543.9 NaN 1387 1606 2993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 2998 25.967 NaN 50850 35 0 7128.3 0.411 -1 QAVQDNPAM 9 32 495.22117453842026 988.4277961436405 2 495.2209777832031 MULTI HCD FTMS 0 0 0 2997 13996.431640625 0.4467307064963462 7 -0.08782005310058594 1 Oxidation (M) _QAVQDNPAM(Oxidation (M))_ ENSG00000137752|ENST00000533400|CASP1;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;ENST00000528424.1_1_11:104901858-104905058:-|nuORF;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000204397|Q5EG05|CARD16 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.0724 0 0 823.3819109891468 0 823.3819109891468 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0724 + + 4 + NaN NaN 110648.8 NaN 1388 1608 2997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3000 25.975 NaN 39707 35 0 7789.9 0.411 + -1 GWAQGCKC 8 28 455.1886897963959 NaN 0 455.1884460449219 PEAK HCD FTMS 0 0 0 2999 6594.3828125 0.5099418931966067 -31 0.3659782409667969 1 Carbamidomethyl (C) _GWAQGC(Carbamidomethyl (C))KC_ REV__ENSG00000115267|ENST00000649979|IFIH1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101388.4 NaN 1389 1609 2999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3002 25.983 NaN 126000 35 0 10818 0.327 + 9552 HRDYETATL 9 43 553.2671728507465 1104.519792768293 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3001 50961.65625 0.009979895208630997 116 -1.4719219207763672 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 13.042465956692817 0.2476723265019929 2 HP 2 8 18.812 0 0 1.7032 0 0 0 867.3845919244749 867.3845919244749 4.1418867139339 0 0 0 0 0.5 0 0 0 HP 1.7032 - 111 + NaN NaN 108043.5 NaN 1390 1610 3001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3003 25.987 NaN 49244 35 0 9187.4 0.261 -1 TAVKNDYEM 9 28 543.7422502191591 1085.4699475051182 2 543.741943359375 MULTI HCD FTMS 0 0 0 3001 11612.9482421875 0.059643409055818365 123 -1.5312423706054688 2 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 2.9952420565917617 0.3283108881486655 2 V[PG] 3 -1 5.9421 0 0 0.54742 0 0 814.3245716779312 0 814.3245716779312 0 1.3380312008851565 0 0 0 0 0 0 0 V[PG] 0.54742 - 8 NaN NaN 97752 NaN 1391 1610 3001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3004 25.991 NaN 20297 35 0 4527.4 0.261 + -1 YKKQRYCS 8 17 566.783893745956 NaN 0 566.7958374023438 PEAK HCD FTMS 0 0 0 3001 1966.5953369140625 0.3203010605691891 -2 0.016071319580078125 3 Carbamidomethyl (C) _YKKQRYC(Carbamidomethyl (C))S_ REV__ENSG00000144962|ENST00000351008|SPATA16 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94059.7 NaN 1392 1610 3001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3006 25.996 NaN 24592 35 0 4702.5 0.327 -1 PEASPSHPMN 10 14 541.7323069544392 1081.4500609756783 2 542.2332153320312 MULTI HCD FTMS 0 0 0 3005 3518.06640625 0.4168041069290834 8 -0.09657478332519531 1 Oxidation (M) _PEASPSHPM(Oxidation (M))N_ ENST00000487501.2_1_20:2816687-2819560:-|nuORF 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90634.7 NaN 1393 1611 3005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3007 26.001 NaN 21554 35 0 4970.8 0.261 + -1 TFMKRFTW 8 18 566.783893745956 NaN 0 566.7965698242188 PEAK HCD FTMS 0 0 0 3005 4124.353515625 0.6717369762962468 -1 0.01328277587890625 2 Oxidation (M) _TFM(Oxidation (M))KRFTW_ REV__ENSG00000196367|ENST00000456197|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95431.3 NaN 1394 1611 3005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3008 26.004 NaN 39067 35 0 6359.1 0.261 + 32637 WLYHSCLSC 9 22 556.2410698975706 NaN 0 556.2408447265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WLYHSCLSC_ REV__ENST00000481546.1_1_21:46191294-46193735:-|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86625.5 NaN 1395 1611 3005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3010 26.01 NaN 26813 35 0 4879.5 0.411 -1 AQQKCNSQE 9 21 546.7394409179688 NaN 0 546.7394409179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _AQQKC(Carbamidomethyl (C))NSQE_ ENST00000369888.5_1_20:62590717-62591047:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92052.6 NaN 1396 1612 3009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3012 26.018 NaN 51552 35 0 6829.9 0.327 -1 0 33 469.32955010576865 936.6445472783373 2 469.32818603515625 MULTI HCD FTMS 0 0 0 3011 7112.7646484375 0.3712818903025994 -1 0.00823974609375 1 NaN NaN 2 AV 2 -1 10.969 0 0 1.1711 0 0 138.14663575665605 625.3669527643186 763.5135885209747 0 0 0 0 0 0 0 0 0 AV 1.1711 - 7 + NaN NaN 95745 NaN 1397 1613 3011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3013 26.022 NaN 22410 35 0 2423.7 0.261 + 20603 PELSQVHR 8 22 483.26186626032825 964.5091795874565 2 483.2618408203125 MULTI HCD FTMS 0 0 0 3011 6118.36328125 0.008188982930119637 101 -1.302286148071289 2 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4494 0 0 799.4631876214394 0 799.4631876214394 0 3.521825181113625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4494 - 5 + NaN NaN 86142.3 NaN 1398 1613 3011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3014 26.026 NaN 21397 35 0 4837.4 0.261 + 23990 RVVEDKPAH 9 14 525.7882847075902 1049.5620164819802 2 525.7875366210938 MULTI HCD FTMS 0 0 0 3011 10389.498046875 0.9943463781303812 8 -0.09288978576660156 3 Unmodified _RVVEDKPAH_ ENST00000378898.8_1_15:100603866-100879329:-|nuORF;nc|ENSG00000140470|Q8TE56-2|ADAMTS17 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88620.3 NaN 1399 1613 3011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3015 26.029 NaN 19418 35 0 4503.2 0.261 + -1 STKLYMCVM 9 21 574.7610473632812 NaN 0 574.7610473632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _STKLYM(Oxidation (M))C(Carbamidomethyl (C))VM_ REV__ENST00000510530.1_1_5:31538398-31538428:+|nuORF 0.6014990680409731 0.29233206172879045 2 C(Carbamidomethyl (C)) 1 -1 1.9897 0 0 0.17339 0 0 817.4561908185561 166.99331079654533 984.4495016151014 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.17339 + + 1 + NaN NaN 103083.6 NaN 1400 1613 3011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3017 26.034 NaN 72226 35 0 12039 0.327 + 32636 WLWTARHPH 9 31 401.8778842771242 NaN 0 401.8779296875 PEAK HCD FTMS 0 0 0 3016 14046.025390625 0.13983280879895563 836 -17.162302017211914 1 Unmodified _WLWTARHPH_ ENST00000380334.6_1_X:15706900-15721312:+|nuORF;nc|ENSG00000290746|Q8WTZ4|CA5BP1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97417.9 NaN 1401 1614 3016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3018 26.039 NaN 40493 35 0 4100.3 0.261 + 11778 KEDTPVRH 8 23 491.2591052378132 980.5036575424264 2 491.2588806152344 MULTI HCD FTMS 0 0 0 3016 9374.9599609375 0.003607746764318366 206 -2.8743896484375 2 Unmodified _KEDTPVRH_ ENSG00000180964|ENST00000372685|TCEAL8 2.302733041254933 0.5385759549224092 2 V[RH] 3 5 5.0617 0 0 0.51623 0 0 570.2653285402764 0 570.2653285402764 0 5.061668675368624 0 0 0 0 0 0 0 + V[RH] 0.51623 + + 4 + NaN NaN 101815.5 NaN 1402 1614 3016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3019 26.042 NaN 17580 35 0 3298.6 0.261 + 32758 WRKHDRDM 8 15 572.2770438131885 1142.5395346931768 2 572.276611328125 MULTI HCD FTMS 0 0 0 3016 7386.1005859375 0.5734029308467014 -6 0.06767845153808594 3 Unmodified _WRKHDRDM_ REV__ENSG00000160633|ENST00000588852|SAFB;REV__ENST00000531724.1_1_11:122489758-122489839:+|nuORF;REV__ENST00000591991.1_1_19:5667238-5667808:+|nuORF;REV__ENST00000592555.1_1_19:5666960-5667808:+|nuORF;REV__nc|ENSG00000160633|Q15424-2|SAFB;REV__nc|ENSG00000160633|Q15424-4|SAFB;REV__nc|ENSG00000160633|Q15424|SAFB 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95015 NaN 1403 1614 3016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3020 26.046 NaN 23859 35 0 4509 0.261 + -1 PWMFKAPHF 9 22 588.7871194552566 1175.5596859773132 2 588.7868041992188 MULTI HCD FTMS 0 0 0 3016 9678.7880859375 0.7043896751269274 9 -0.09429740905761719 4 Oxidation (M) _PWM(Oxidation (M))FKAPHF_ REV__ENST00000326195.12_1_6:30558692-30558890:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95893.7 NaN 1404 1614 3016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3021 26.049 NaN 72705 35 0 13279 0.264 -1 0 33 400.35052490234375 NaN 0 400.35052490234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93244 NaN 1405 1614 3016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3023 26.055 NaN 189510 35 0 16774 0.327 + 26027 SPEEKQEML 9 53 553.7553535910436 1105.496154248887 2 553.75537109375 MULTI HCD FTMS 0 0 0 3022 79084.578125 0.27368836052581946 -21 0.2663707733154297 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 49.74193281347159 0.03193181027262171 2 [PS]EEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 64.848 0 0 5.866 5.866 88.336 0 0 0 4.762036441594191 50.78009063929706 4.762036441594191 9.208187539523749 0 2.1549471895720984 0 0.4247425010840047 0 + + [PS]EEKQE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L} 5.866;5.033 +;- + 182 NaN NaN 115726.3 NaN 1406 1615 3022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3024 26.059 NaN 41134 35 0 8725.2 0.261 + 5649 FNGIFERSK 9 16 549.2906083278716 1096.5666637225431 2 549.2909545898438 MULTI HCD FTMS 0 0 0 3022 18505.146484375 0.57611211555424 -5 0.07174873352050781 2 Unmodified _FNGIFERSK_ REV__ENSG00000102230|ENST00000379144|PCYT1B;REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;REV__nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;REV__nc|ENSG00000102230|Q9Y5K3-4|PCYT1B 6.2057823575117 0.30397260197431997 2 K{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.6377 0 0 803.3916859654256 0 803.3916859654256 0 17.95880017344075 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 1.6377 - 1 NaN NaN 89902.7 NaN 1407 1615 3022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3026 26.065 NaN 35626 35 0 3390.7 0.327 + 12441 KQEKPILT 8 26 478.7924546158407 955.5703562984814 2 478.79229736328125 MULTI HCD FTMS 0 0 0 3025 17164.50390625 0.7042010828616143 2 -0.01990509033203125 1 Unmodified _KQEKPILT_ REV__ENSG00000175471|ENST00000515393|MCTP1;REV__nc|ENSG00000175471|Q6DN14-2|MCTP1;REV__nc|ENSG00000175471|Q6DN14-3|MCTP1;REV__nc|ENSG00000175471|Q6DN14-4|MCTP1;REV__nc|ENSG00000175471|Q6DN14-5|MCTP1 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97866.9 NaN 1408 1616 3025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3027 26.069 NaN 65077 35 0 15707 0.261 + 18083 MMRKGLPE 8 21 481.25114831772004 960.4877437022401 2 481.2507629394531 MULTI HCD FTMS 0 0 0 3025 16537.06640625 0.6424821989019877 -4 0.05517768859863281 2 Unmodified _MMRKGLPE_ ENSG00000169340|ENST00000302451|PDILT 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96608.2 NaN 1409 1616 3025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3029 26.074 NaN 28974 35 0 5302.3 0.327 + 5061 FDSEGVASRR 10 14 562.2781733266598 1122.5417937201196 2 562.2776489257812 MULTI HCD FTMS 0 0 0 3028 11363.5009765625 0.34934955169375714 -12 0.14228057861328125 1 Unmodified _FDSEGVASRR_ ENSG00000106078|ENST00000265136|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-2|COBL;nc|ENSG00000106078|O75128-3|COBL;nc|ENSG00000106078|O75128-6|COBL;nc|ENSG00000106078|O75128-7|COBL 1.3295316138638542 0.46826628246186464 2 R 1 9 13.495 0 0 1.2022 0 0 948.4313486291024 0 948.4313486291024 0 13.494850021680094 0 0 0 0 0 0 0 + R 1.2022 + + 1 + NaN NaN 107875 NaN 1410 1617 3028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3030 26.079 NaN 36339 35 0 9468.5 0.261 + 31252 VVSQCDLQAP 10 20 530.2602225426356 1058.505892152071 2 530.2599487304688 MULTI HCD FTMS 0 0 0 3028 5567.513671875 1 0 0 2 Unmodified _VVSQCDLQAP_ ENSG00000174718|ENST00000312561|RESF1 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94422.3 NaN 1411 1617 3028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3032 26.084 NaN 33532 35 0 5167.8 0.411 + 8454 HAAFSSRHF 9 32 530.2602225426356 1058.505892152071 2 530.259765625 MULTI HCD FTMS 0 0 0 3031 3793.164306640625 0.6813030968926533 1 -0.008052825927734375 1 Unmodified _HAAFSSRHF_ ENSG00000205730|ENST00000381440|ITPRIPL2;ENST00000564808.6_1_16:19125342-19138551:+|nuORF;ENST00000566735.1_1_16:19125342-19127388:+|nuORF 2.302733041254933 0.33356062215410776 2 [HA]A 3 6 4.437 0 0 0.41917 0 0 0 776.352302634746 776.352302634746 4.436974992327125 0 0 0 0 0 0 0 0 + [HA]A 0.41917 + + 3 NaN NaN 106751.6 NaN 1412 1618 3031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3034 26.093 NaN 18280 35 0 3841.4 0.326 + -1 SYYNPDERCMC 11 15 512.8565673828125 NaN 0 512.8565673828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))SYYNPDERC(Carbamidomethyl (C))MC(Carbamidomethyl (C))_ REV__PLXNB2|p.R248C|1|0.6|ENSG00000196576|chr22:50289843-50289843|G/A|missense_variant 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106731.4 NaN 1413 1619 3033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3035 26.097 NaN 34009 35 0 11469 0.261 + 20604 PELSQVHR 8 25 483.26186626032825 964.5091795874565 2 483.6985778808594 MULTI HCD FTMS 0 0 0 3033 6365.365234375 0.008519577026100416 107 -1.3620643615722656 2 Unmodified _PELSQVHR_ REV__ENSG00000116863|ENST00000373178|ADPRS 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4494 0 0 799.4634470208534 0 799.4634470208534 0 3.521825181113625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4494 - 6 + NaN NaN 97020.1 NaN 1414 1619 3033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3037 26.102 NaN 35372 35 0 4566.9 0.411 + 10714 IQDRVTLPN 9 36 528.2959668696238 1054.5773808060476 2 528.2957153320312 MULTI HCD FTMS 0 0 0 3036 10866.30078125 0.3941364095295282 -6 0.06819725036621094 1 Unmodified _IQDRVTLPN_ REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102900 NaN 1415 1620 3036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3039 26.11 NaN 19816 35 0 5811.1 0.411 -1 WWWCCTSRDCH 11 19 513.8599605494695 NaN 0 514.2201538085938 PEAK HCD FTMS 0 0 0 3038 1794.0455322265625 0.34064908382660875 7 -0.06545257568359375 1 Carbamidomethyl (C) _WWWCCTSRDC(Carbamidomethyl (C))H_ ENST00000421745.6_1_2:32582219-32582270:+|nuORF 0.0732635311334299 0.34191231592972665 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90691.8 NaN 1416 1621 3038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3041 26.119 NaN 66818 35 0 7607.4 0.327 + 8451 HAADPIITR 9 24 497.2775907180486 992.5406285028972 2 497.2776184082031 MULTI HCD FTMS 0 0 0 3040 21502.830078125 0.9326696561029977 -5 0.04404258728027344 1 Unmodified _HAADPIITR_ ENSG00000170502|ENST00000302174|NUDT9;nc|ENSG00000170502|Q9BW91-2|NUDT9 6.2057823575117 0.30397260197431997 2 [HA]W 3 7 18.952 0 0 1.9095 0 0 0 595.3576503366205 595.3576503366205 11.962724883926658 0 0 0 0 0.8494850021680094 0 0 0 [HA]W 1.9095 - 12 + NaN NaN 96624.9 NaN 1417 1622 3040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3042 26.123 NaN 33139 35 0 10472 0.261 + -1 STPLCLYM 8 20 500.72934668850695 NaN 0 500.7296447753906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _STPLC(Carbamidomethyl (C))LYM(Oxidation (M))_ REV__ENST00000435096.1_1_7:139044701-139059229:+|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89985.5 NaN 1418 1622 3040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3044 26.129 NaN 64464 35 0 5247.6 0.411 + 9041 HPESERISM 9 48 543.2558073734853 1084.4970618137704 2 543.2562255859375 MULTI HCD FTMS 0 0 0 3043 15848.7490234375 0.1006513818925938 -17 0.17973899841308594 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 8.155526934196011 0.2891920862272901 2 HPE 3 6 31.198 0 0 2.8767 0 0 0 718.32075600758 718.32075600758 29.604093769761874 0 0 0 0 0.5 0 0 0 + HPE 2.8767 + + 16 + NaN NaN 100322.7 NaN 1419 1623 3043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3046 26.137 NaN 50909 35 0 9246.5 0.411 + 3722 EMDILQNI 8 35 488.2431159095105 NaN 0 488.2430419921875 PEAK HCD FTMS 0 0 0 3045 10268.7744140625 0.6120089831567557 10 -0.1140899658203125 1 Unmodified _EMDILQNI_ REV__ENSG00000149600|ENST00000278980|COMMD7;REV__ENST00000610160.1_1_20:31291624-31315937:-|nuORF;REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113237.4 NaN 1420 1624 3045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3048 26.145 NaN 43738 35 0 5962.8 0.411 -1 0 41 469.32955010576865 936.6445472783373 2 469.3285827636719 MULTI HCD FTMS 0 0 0 3047 8579.357421875 0.4478371208128096 11 -0.1310901641845703 1 NaN NaN 2 V 1 -1 6.9897 0 0 0.74625 0 0 209.1878344871248 625.3685408041806 834.5563752913054 0 0 0 0 0 0 0 0 0 V 0.74625 - 2 + NaN NaN 103670.2 NaN 1421 1625 3047 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3050 26.153 NaN 70050 35 0 14306 0.327 + 1276 AYMAYRVTTK 10 24 401.8778842771242 NaN 0 401.8779602050781 PEAK HCD FTMS 0 0 0 3049 10144.177734375 0.1009886303139001 848 -17.699190139770508 1 Unmodified _AYMAYRVTTK_ ENSG00000205302|ENST00000379516|SNX2;ENST00000505854.5_1_5:122110798-122139331:+|nuORF;nc|ENSG00000205302|O60749-2|SNX2 0.35063188157827746 0.339884196735365 2 N 1 10 1.9897 0 0 0.24817 0 0 400.6850765603047 283.99836145572505 684.6834380160298 0 0 0 0 0 0 0 0 0 N 0.24817 - 1 + NaN NaN 114056 NaN 1422 1626 3049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3051 26.157 NaN 33549 35 0 10207 0.261 + -1 HDWNLYCYRYF 11 21 546.2381591796875 NaN 0 546.2381591796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _HDWNLYC(Carbamidomethyl (C))YRYF_ REV__ENSG00000163354|ENST00000368424|DCST2;REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100935.5 NaN 1423 1626 3049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3053 26.163 NaN 28854 35 0 4504.7 0.327 + 33027 YCFTDGVF 8 19 476.1984793406867 NaN 0 476.1985778808594 PEAK HCD FTMS 0 0 0 3052 14976.166015625 0.7098745910567876 -88 1.0155143737792969 1 Unmodified _YCFTDGVF_ REV__ENSG00000172269|ENST00000354202|DPAGT1;REV__ENST00000392834.7_1_11:118967710-118972378:-|nuORF;REV__ENST00000461999.1_1_11:118968563-118968800:-|nuORF;REV__nc|ENSG00000172269|Q9H3H5-2|DPAGT1;REV__nc|ENSG00000172269|Q9H3H5-3|DPAGT1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98576.3 NaN 1424 1627 3052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3054 26.167 NaN 35695 35 0 5669.5 0.261 + 23289 RHQLWMVME 9 24 410.5351104994171 1228.5835020984514 3 410.53466796875 MULTI HCD FTMS 0 0 0 3052 6859.748046875 0.3357644339068073 -5 0.044132232666015625 2 Unmodified _RHQLWMVME_ ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-3|NRK 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88110.7 NaN 1425 1627 3052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3055 26.171 NaN 17556 35 0 4231.8 0.261 + -1 SAHKWQACR 9 16 572.2770438131885 1142.5395346931768 2 572.27734375 MULTI HCD FTMS 0 0 0 3052 5228.3232421875 0.4058888496850493 7 -0.08797645568847656 3 Carbamidomethyl (C) _SAHKWQAC(Carbamidomethyl (C))R_ REV__ENST00000423318.1_1_3:194465316-194465379:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91664.3 NaN 1426 1627 3052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3057 26.176 NaN 389600 35 0 30388 0.327 + 26028 SPEEKQEML 9 76 553.7553535910436 1105.496154248887 2 553.7554931640625 MULTI HCD FTMS 0 0 0 3056 205147.578125 0.7099551600835414 -8 0.07349967956542969 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 121.34585337138759 0.001129813327125052 2 [PS]EEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 89.747 0 0 8.1183 8.1183 92.205 0 0 0 7.147642715192504 63.51728122573242 7.147642715192504 9.208187539523749 0 2.1549471895720984 0 1.7104093769761874 0.25 + + [PS]EEKQE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};[EP]SEKQE{M(Oxidation (M))|F}{I|L};[EP]SEK[AG]E{M(Oxidation (M))|F}{I|L};SPEEKQE{M(Oxidation (M))|F}{I|L};[EP]ESKQE{M(Oxidation (M))|F}{I|L};EEPSKQE{M(Oxidation (M))|F}{I|L};[PS]ET[VG]QE{M(Oxidation (M))|F}{I|L};SPEEKDAA{M(Oxidation (M))|F}{I|L};[EP]ESK[AG]E{M(Oxidation (M))|F}{I|L} 8.1183;7.2853;7.1018;6.2689;6.1076;5.8286;5.6964;5.5968;5.5474;4.9956 +;-;-;-;+;-;-;-;-;- + 1289 NaN NaN 138173.6 NaN 1427 1628 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3058 26.181 NaN 55360 35 0 8815.9 0.261 -1 VLMNCPEI 8 24 488.2350351967942 974.4555174603884 2 488.23480224609375 MULTI HCD FTMS 0 0 0 3056 11541.8017578125 0.2981844984897522 -7 0.06545257568359375 2 Carbamidomethyl (C) _VLMNC(Carbamidomethyl (C))PEI_ ENSG00000145390|ENST00000692078|USP53 4.3292370932331545 0.5355693454741696 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87737.1 NaN 1428 1628 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3059 26.184 NaN 37048 35 0 4529.7 0.261 + 4184 ETTNLIHR 8 26 492.26720623336905 982.5198595335381 2 492.2676696777344 MULTI HCD FTMS 0 0 0 3056 10762.9638671875 0.6372621182593909 5 -0.06123924255371094 3 Unmodified _ETTNLIHR_ REV__ENSG00000116213|ENST00000270708|WRAP73 7.910154910731844 0.5302565402355366 2 {I|L}{I|L}HR 4 -1 25.662 0 0 2.6118 0 0 445.18039527748186 0 445.18039527748186 0 25.661837734644593 0 0 0 0 0 0 0 {I|L}{I|L}HR 2.6118 + + 10 + NaN NaN 90473.5 NaN 1429 1628 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3060 26.187 NaN 32453 35 0 9580.8 0.261 + -1 SRERRWMRLWP 11 18 530.2808859971481 NaN 0 530.2811889648438 PEAK HCD FTMS 0 0 0 3056 5790.3642578125 0.6492749804894463 -5 0.04739952087402344 4 Oxidation (M) _SRERRWM(Oxidation (M))RLWP_ REV__ENSG00000187186|ENST00000421828|unknown 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87002.6 NaN 1430 1628 3056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3063 26.2 NaN 49963 35 0 17139 0.327 + 3307 EEGYRTRNV 9 24 562.2781733266598 1122.5417937201196 2 562.2781982421875 MULTI HCD FTMS 0 0 0 3062 23568.107421875 0.7245573154861477 1 -0.01325225830078125 1 Unmodified _EEGYRTRNV_ ENSG00000181619|ENST00000395116|GPR135 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92822.9 NaN 1431 1630 3062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3064 26.205 NaN 47084 35 0 8813.8 0.261 + 19612 NTVHDIVNR 9 26 534.2833464426224 1066.5521399520446 2 534.2830810546875 MULTI HCD FTMS 0 0 0 3062 20481.94921875 0.6472731254415502 -2 0.024555206298828125 2 Unmodified _NTVHDIVNR_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ENSG00000119203|ENST00000238112|CPSF3 5.296884461304476 0.3108627248283497 2 {[QS]|[NT]}VHD 5 4 20.713 0 0 1.9421 0 0 0 497.2838533990844 497.2838533990844 16.73393743112328 0 0 0 0 0 0 0 0 + {[QS]|[NT]}VHD 1.9421 + + 10 + NaN NaN 90336.2 NaN 1432 1630 3062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3065 26.208 NaN 49838 35 0 12081 0.261 + 18084 MMRKGLPE 8 20 481.25114831772004 960.4877437022401 2 481.7525939941406 MULTI HCD FTMS 0 0 0 3062 6636.56298828125 0.45053752854874585 8 -0.10321617126464844 3 Unmodified _MMRKGLPE_ ENSG00000169340|ENST00000302451|PDILT 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101189.8 NaN 1433 1630 3062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3067 26.214 NaN 27133 35 0 4640.9 0.327 + 35314 YWLYWQDWFRD 11 21 559.9207525521379 NaN 0 559.7069091796875 PEAK HCD FTMS 0 0 0 3066 1843.2843017578125 0.3324423913014762 -1 0.01325225830078125 1 Unmodified _YWLYWQDWFRD_ REV__ENST00000488825.5_1_3:123813684-123881061:+|nuORF;REV__nc|ENSG00000160145|O60229-2|KALRN;REV__nc|ENSG00000160145|O60229|KALRN 0 0.34212014346876374 2 D 1 -1 6.9897 0 0 0.62529 0 0 315.5395509033006 684.2494600885374 999.789010991838 0 0 0 0 0 0 0 0 0 D 0.62529 + + 1 + NaN NaN 89241.3 NaN 1434 1631 3066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3068 26.218 NaN 35801 35 0 11251 0.261 + 12675 KWGRKKGP 8 25 478.7924546158407 955.5703562984814 2 478.792724609375 MULTI HCD FTMS 0 0 0 3066 3375.52880859375 0.13848644011067243 17 -0.1966400146484375 2 Unmodified _KWGRKKGP_ REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102690.2 NaN 1435 1631 3066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3070 26.224 NaN 37694 35 0 5799.4 0.327 + 10715 IQDRVTLPN 9 18 528.2959668696238 1054.5773808060476 2 528.2954711914062 MULTI HCD FTMS 0 0 0 3069 10814.90625 0.3922722557182072 6 -0.07980728149414062 1 Unmodified _IQDRVTLPN_ REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94671.8 NaN 1436 1632 3069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3071 26.228 NaN 31580 35 0 4623.3 0.261 -1 RDQAVMPY 8 22 498.2343327229172 NaN 0 498.23455810546875 PEAK HCD FTMS 0 0 0 3069 10130.7939453125 0.6948571929972625 1 -0.013275146484375 2 Oxidation (M) _RDQAVM(Oxidation (M))PY_ ENSG00000260456|ENST00000567970|C16orf95 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93284.5 NaN 1437 1632 3069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3072 26.232 NaN 37985 35 0 11160 0.261 + 21026 PLQHEVRS 8 26 483.26186626032825 964.5091795874565 2 483.2618408203125 MULTI HCD FTMS 0 0 0 3069 5268.27734375 0.007051204914771057 120 -1.580556869506836 3 Unmodified _PLQHEVRS_ REV__ENST00000368194.7_1_1:157014260-157014320:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94715.9 NaN 1438 1632 3069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3074 26.237 NaN 59379 35 0 5821.7 0.327 + 8502 HAEQERVAL 9 31 526.7778177067554 1051.5410824803107 2 527.2789916992188 MULTI HCD FTMS 0 0 0 3073 15676.107421875 0.7760746369852497 1 -0.013463973999023438 1 Unmodified _HAEQERVAL_ ENSG00000088970|ENST00000619189|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;nc|ENSG00000088970|Q2M2Z5-5|KIZ 11.494710602746466 0.2610445893512368 2 HAE 3 6 25.802 0 0 2.4537 0 0 0 711.3794649713499 711.3794649713499 25.80198135264581 0 0 0 0 0.5 0 0 0 + HAE 2.4537 + + 4 + NaN NaN 101819.3 NaN 1439 1633 3073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3075 26.242 NaN 25765 35 0 4684.5 0.261 + 28341 TPAPVEKSPA 10 18 498.7716695524442 995.5287861716885 2 498.7715148925781 MULTI HCD FTMS 0 0 0 3073 16603.24609375 1 0 0 2 Unmodified _TPAPVEKSPA_ ENSG00000184357|ENST00000331442|H1-5 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80991 NaN 1440 1633 3073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3076 26.245 NaN 32918 35 0 11747 0.261 -1 DASQPEATM 9 19 483.19788928646983 964.3812256397397 2 483.19769287109375 MULTI HCD FTMS 0 0 0 3073 9343.1318359375 0.08055552468287583 -24 0.2626056671142578 3 Oxidation (M) _DASQPEATM(Oxidation (M))_ ENSG00000239887|ENST00000458626|C1orf226;nc|nan|A1L170-2|C1orf226 6.723162845929126 0.3000504726104499 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 93218.4 NaN 1441 1633 3073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3078 26.251 NaN 267210 35 0 38839 0.327 + 9042 HPESERISM 9 43 543.2558073734853 1084.4970618137704 2 543.2557373046875 MULTI HCD FTMS 0 0 0 3077 118278.078125 0.751154049652515 -6 0.07470321655273438 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 24.990960013464015 0.14443998892849796 2 HPEM 4 5 39.68 0 0 3.6589 0 0 0 587.2814425104124 587.2814425104124 28.44335023848103 0 0 0 0 0.5 0 0.4247425010840047 0 HPEM 3.6589 - 28 + NaN NaN 124672 NaN 1442 1634 3077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3079 26.255 NaN 63050 35 0 6843.5 0.262 -1 EAVGVMATR 9 33 475.2420668245838 948.4695807159676 2 475.2424011230469 MULTI HCD FTMS 0 0 0 3077 16671.33203125 0.6520900640881175 -2 0.026739120483398438 2 Oxidation (M) _EAVGVM(Oxidation (M))ATR_ ENST00000398559.6_1_3:69101351-69101438:-|nuORF 10.150570793230772 0.27265765907388223 2 {[CP]|[EA]}VGV{M(Oxidation (M))|F} 6 -1 25.406 0 0 2.6786 0 0 0 343.1731051080688 343.1731051080688 16.453650195120844 0 0 0 0 0 0 0 0 {[CP]|[EA]}VGV{M(Oxidation (M))|F} 2.6786 + + 36 + NaN NaN 95351.2 NaN 1443 1634 3077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3080 26.259 NaN 38038 35 0 7583.4 0.261 + -1 GRCMAGWA 8 22 455.1886897963959 NaN 0 455.1886291503906 PEAK HCD FTMS 0 0 0 3077 7448.19091796875 0.5759666500402696 -6 0.07470321655273438 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))GRCM(Oxidation (M))AGWA_ REV__chr6:32830440-32832333|223|17.24|0.93|4.21|-|1|TAP2,TAP2|1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90679.9 NaN 1444 1634 3077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3081 26.262 NaN 47582 35 0 11479 0.261 + 33686 YKPHGWNS 8 26 494.73625116912274 987.4579494050455 2 494.7359924316406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YKPHGWNS_ REV__ENSG00000164744|ENST00000297325|SUN3;REV__nc|ENSG00000164744|Q8TAQ9-2|SUN3;REV__nc|ENSG00000164744|Q8TAQ9-3|SUN3 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89971.8 NaN 1445 1634 3077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3083 26.268 NaN 21703 35 0 2900 0.411 -1 GKLMEGMQVL 10 26 569.2860607315771 1136.557568529954 2 569.2859497070312 MULTI HCD FTMS 0 0 0 3082 3848.5224609375 0.3981170071248925 -3 0.04355812072753906 1 2 Oxidation (M) _GKLM(Oxidation (M))EGM(Oxidation (M))QVL_ ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO 5.296884461304476 0.4472664531305844 2 V{I|L} 2 -1 20.969 0 0 1.845 0 0 906.3941166520498 0 906.3941166520498 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.845 + + 2 NaN NaN 101510 NaN 1446 1635 3082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3085 26.276 NaN 37216 35 0 5834.5 0.411 -1 0 28 469.32955010576865 936.6445472783373 2 469.3286437988281 MULTI HCD FTMS 0 0 0 3084 11447.912109375 0.5975738911761234 22 -0.28060150146484375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93154.4 NaN 1447 1636 3084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3087 26.284 NaN 94377 35 0 15402 0.326 -1 QPMQPTPSM 9 27 524.7253770472984 1047.4362011613966 2 524.7254028320312 MULTI HCD FTMS 0 0 0 3086 34968.0078125 0.3410460185689631 -12 0.1391582489013672 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 8.745405648335112 0.2847203663274469 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93748 NaN 1448 1637 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3088 26.288 NaN 53693 35 0 21426 0.261 -1 0 14 612.1802641095542 611.1729876429541 1 612.1806640625 MULTI HCD FTMS 0 0 0 3086 28522.73046875 0.5010449674645501 -84 0.9727039337158203 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96136.5 NaN 1449 1637 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3089 26.292 NaN 31148 35 0 6271.4 0.262 + 20413 PAAAAPGVPRS 11 22 497.2775907180486 992.5406285028972 2 497.27789306640625 MULTI HCD FTMS 0 0 0 3086 10461.15234375 0.4537448942040448 10 -0.11901664733886719 3 Unmodified _PAAAAPGVPRS_ ENSG00000179111|ENST00000541682|HES7 1.4819007175156935 0.4124215533673021 2 S 1 10 3.9794 0 0 0.40093 0 0 495.79186248902846 406.6875399225219 902.4794024115504 0 0 0 0 0 0 0 0 0 + S 0.40093 + + 1 + NaN NaN 115541.5 NaN 1450 1637 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3090 26.295 NaN 19198 35 0 5728.2 0.261 + -1 TKSMDLYLK 9 13 557.7940372786954 NaN 0 557.7938232421875 PEAK HCD FTMS 0 0 0 3086 1766.197509765625 0.4466107662262795 1 -0.019962310791015625 4 Oxidation (M) _TKSM(Oxidation (M))DLYLK_ REV__ENSG00000142621|ENST00000688493|FHAD1;REV__ENST00000477846.5_1_1:15707235-15714865:+|nuORF;REV__nc|ENSG00000142621|B1AJZ9-3|FHAD1;REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1;REV__nc|ENSG00000142621|B1AJZ9|FHAD1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104127.8 NaN 1451 1637 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3091 26.298 NaN 12784 35 0 4084.4 0.261 -1 LYPMYAVCF 9 12 574.7619018554688 NaN 0 574.7619018554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LYPMYAVCF_ ENST00000368984.7_1_10:124274086-124274140:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93788.4 NaN 1452 1637 3086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3093 26.304 NaN 469470 35 0 34423 0.327 + 26029 SPEEKQEML 9 83 553.7553535910436 1105.496154248887 2 553.75537109375 MULTI HCD FTMS 0 0 0 3092 267441.75 0.9255368850544282 2 -0.020086288452148438 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 125.0377797344192 0.0009059125702818869 2 [PS]EEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 106.36 0 0 9.6208 9.6208 93.907 0 0 0 20.57294570320066 16.478174818886373 16.478174818886373 9.208187539523749 0 2.274227503252014 1.6989700043360187 1.3684151806525389 0.6109243748081782 + + [PS]EEKQE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};SPEEKQE{M(Oxidation (M))|F}{I|L};[EP]SEKQE{M(Oxidation (M))|F}{I|L};[PS]{[DS]|[MA]|[CV]|TT}[{I|L}A]QE{M(Oxidation (M))|F}{I|L};EEPSKQE{M(Oxidation (M))|F}{I|L};[EP]SEK[AG]E{M(Oxidation (M))|F}{I|L};[EP]ESKQE{M(Oxidation (M))|F}{I|L};SPEE[VS][QA]{M(Oxidation (M))|F}{I|L};[PS]EEK[MT][DG]{I|L} 9.6208;8.7879;7.7599;6.8366;6.2457;6.0877;6.0037;5.6673;5.4108;5.3693 +;-;+;-;-;-;-;-;-;- + 1285 NaN NaN 157807.6 NaN 1453 1638 3092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3094 26.308 NaN 22378 35 0 3856 0.261 + -1 RCHCRCST 8 23 568.7286068025285 NaN 0 568.7281494140625 PEAK HCD FTMS 0 0 0 3092 3673.8642578125 0.5996597816985698 -3 0.03624916076660156 2 3 Carbamidomethyl (C) _RC(Carbamidomethyl (C))HC(Carbamidomethyl (C))RC(Carbamidomethyl (C))ST_ REV__C8A|p.Q518H|1|0.23|ENSG00000157131|chr1:56912576-56912576|G/T|missense_variant 0.6903765706972694 0.38822285293237185 2 V 1 -1 3.0989 0 0 0.27293 0 0 583.3608868454882 449.97858403647734 1033.3394708819656 0 0 0 0 0 0 0 0 0 V 0.27293 - 1 + NaN NaN 90169.4 NaN 1454 1638 3092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3096 26.314 NaN 82243 35 0 8702 0.327 + 27650 TAKDSDPEL 9 33 488.2350351967942 974.4555174603884 2 488.2350769042969 MULTI HCD FTMS 0 0 0 3095 31871.435546875 0.8234041984182009 4 -0.036037445068359375 1 Unmodified _TAKDSDPEL_ ENSG00000140326|ENST00000356231|CDAN1;nc|ENSG00000140326|Q8IWY9-1|CDAN1 5.296884461304476 0.3108627248283497 2 {I|L} 1 8 8.0989 0 0 0.83113 0 0 617.2669626281603 241.07488428287346 858.3418469110337 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.83113 + + 1 + NaN NaN 113178.9 NaN 1455 1639 3095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3097 26.318 NaN 14393 35 0 4862.7 0.261 -1 RLCPQCECD 9 11 590.7295454705937 NaN 0 590.72998046875 PEAK HCD FTMS 0 0 0 3095 3345.802734375 0.42041094498596954 -4 0.04638671875 2 2 Carbamidomethyl (C) _RLC(Carbamidomethyl (C))PQC(Carbamidomethyl (C))ECD_ ENST00000560079.6_1_15:85345654-85346083:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94155.2 NaN 1456 1639 3095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3099 26.324 NaN 22968 35 0 4061.8 0.411 -1 MMEQMKIW 8 21 564.7486068081573 NaN 0 564.748779296875 PEAK HCD FTMS 0 0 0 3098 1888.697021484375 0.393933213932829 1 -0.008104324340820312 1 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))EQMKIW_ ENST00000521949.1_1_8:99244015-99248416:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100150.1 NaN 1457 1640 3098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3101 26.332 NaN 211900 35 0 29433 0.327 -1 VAAKDVVM 8 43 424.73113561170095 847.4477182902019 2 424.73089599609375 MULTI HCD FTMS 0 0 0 3100 82038.84375 0.4409304467631227 -7 0.08125877380371094 1 Oxidation (M) _VAAKDVVM(Oxidation (M))_ ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10 36.12702656103203 0.2806826090546818 2 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 8 -1 + 52.713 0 0 6.2202 6.2202 93.555 0 0 0 52.7132064533734 1.2371250542002343 1.2371250542002343 52.7132064533734 0 1.110924374808178 1.3979400086720375 0 0 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 6.2202 - 32 + NaN NaN 120932.4 NaN 1458 1641 3100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3102 26.336 NaN 9829.7 35 0 2870.5 0.261 + -1 DSCSGHCDEDC 11 11 642.680419921875 NaN 0 642.680419921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _DSC(Carbamidomethyl (C))SGHC(Carbamidomethyl (C))DEDC_ REV__ENSG00000138315|ENST00000334011|OIT3;REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88271.1 NaN 1459 1641 3100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3104 26.342 NaN 25018 35 0 4305.9 0.411 + 13990 KYSLVKNKI 9 24 546.8423710572768 1091.6701891813534 2 546.8421630859375 MULTI HCD FTMS 0 0 0 3103 9829.8525390625 0.4842644130903918 -5 0.058078765869140625 1 Unmodified _KYSLVKNKI_ ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF 2.9952420565917617 0.3283108881486655 2 KY 2 7 16.198 0 0 1.4838 0 0 0 797.4861544244749 797.4861544244749 13.723637474483468 0 0 0 0 0 0 0 0 + KY 1.4838 + + 2 + NaN NaN 111292.2 NaN 1460 1642 3103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3106 26.35 NaN 24396 35 0 3196.3 0.411 + -1 CRHRHRCI 8 31 569.2860607315771 1136.557568529954 2 569.7869262695312 MULTI HCD FTMS 0 0 0 3105 1581.391845703125 0.22071247534466024 1 -0.008035659790039062 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))RHRHRCI_ REV__nc|ENSG00000182077|Q3KNS1-2|PTCHD3;REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 2.302733041254933 0.5385759549224092 2 P 1 -1 0.3786 0 0 0.033311 0 0 586.3219250746791 450.1737154596313 1036.4956405343105 0 0 0 0 0 0 0 0 0 P 0.033311 - 3 + NaN NaN 94350.4 NaN 1461 1643 3105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3108 26.358 NaN 32121 35 0 3767.4 0.411 + -1 PECEYDWE 8 36 564.2031985440813 NaN 0 564.2031860351562 PEAK HCD FTMS 0 0 0 3107 3897.04052734375 1 0 0 1 Carbamidomethyl (C) _PEC(Carbamidomethyl (C))EYDWE_ REV__ENSG00000161888|ENST00000592540|SPC24;REV__ENST00000423327.2_1_19:11257861-11259987:-|nuORF;REV__nc|ENSG00000161888|Q8NBT2-2|SPC24 2.302733041254933 0.38822285293237185 2 D 1 -1 6.9897 0 0 0.62054 0 0 334.1394085250924 674.2042330377561 1008.3436415628485 0 0 0 0 0 0 0 0 0 D 0.62054 + + 8 + NaN NaN 105444.5 NaN 1462 1644 3107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3110 26.366 NaN 52486 35 0 5311.1 0.327 + 8565 HATRGPDVSL 10 27 526.7778177067554 1051.5410824803107 2 526.7777709960938 MULTI HCD FTMS 0 0 0 3109 23569.162109375 0.6015858853126316 10 -0.14650726318359375 1 Unmodified _HATRGPDVSL_ ENSG00000214357|ENST00000369800|NEURL1B;nc|ENSG00000214357|A8MQ27-2|NEURL1B 11.494710602746466 0.4035943721457025 2 HA 2 8 21.198 0 0 2.0159 0 0 0 840.4226168268186 840.4226168268186 14.208187539523749 0 0 0 0 0.5 0 0 0 + HA 2.0159 + + 9 + NaN NaN 95418.7 NaN 1463 1645 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3111 26.37 NaN 39394 35 0 5345.4 0.261 + 9402 HPTPRSPL 8 26 452.7535156560518 903.4924783789036 2 452.7528381347656 MULTI HCD FTMS 0 0 0 3109 20187.49609375 0.6146377531560548 -8 0.08228874206542969 2 Unmodified _HPTPRSPL_ nc|ENSG00000151914|Q03001-3|DST 9.38312468134398 0.524755689532147 2 P{I|L} 2 6 21.454 0 0 2.3745 0 0 675.346971580275 0 675.346971580275 0 1.9897000433601875 0 0 0 0.5 0 0 0 + P{I|L} 2.3745 + + 4 NaN NaN 86804.4 NaN 1464 1645 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3112 26.374 NaN 37066 35 0 8648.6 0.261 + 30303 VKRDSGSGGFN 11 21 562.2781733266598 1122.5417937201196 2 562.2778930664062 MULTI HCD FTMS 0 0 0 3109 1737.3916015625 0.0534128503508049 15 -0.21696853637695312 3 Unmodified _VKRDSGSGGFN_ ENSG00000184677|ENST00000375647|ZBTB40 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95830.6 NaN 1465 1645 3109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3114 26.38 NaN 163030 35 0 22800 0.327 + 9043 HPESERISM 9 37 543.2558073734853 1084.4970618137704 2 543.2557983398438 MULTI HCD FTMS 0 0 0 3113 87362.1796875 0.5548150265798573 6 -0.09302520751953125 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 20.41453444215458 0.18397929046831515 2 HPE 3 6 35.445 0 0 3.2684 0 0 0 718.319505480369 718.319505480369 18.455612550363796 0 0 0 0 0.5 0 0.4247425010840047 0 + HPE 3.2684 + + 14 + NaN NaN 110537.9 NaN 1466 1646 3113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3115 26.384 NaN 43337 35 0 4664.7 0.261 -1 EAVGVMATR 9 30 475.2420668245838 948.4695807159676 2 475.2417297363281 MULTI HCD FTMS 0 0 0 3113 22587.8046875 0.8835096666944237 10 -0.15004539489746094 2 Oxidation (M) _EAVGVM(Oxidation (M))ATR_ ENST00000398559.6_1_3:69101351-69101438:-|nuORF 7.101721422024254 0.29718071671418667 2 {[CP]|[EA]}VR{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8 -1 + 35.406 0 0 3.733 3.733 86.026 0 0 0 35.406075122407685 6.9897000433601875 6.9897000433601875 9.262137858390812 0 0 0 0 0 {[CP]|[EA]}VR{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[CP]|[EA]}V[VG]{M(Oxidation (M))|F}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.733;2.7564 -;+ + 33 + NaN NaN 100834.1 NaN 1467 1646 3113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3116 26.387 NaN 65786 35 0 11151 0.261 + 20492 PCPSAQFQVVK 11 27 401.8778842771242 NaN 0 401.87811279296875 PEAK HCD FTMS 0 0 0 3113 11494.7734375 0.11443425535497555 868 -18.579252243041992 3 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94093.4 NaN 1468 1646 3113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3117 26.391 NaN 25021 35 0 6173.6 0.261 + -1 FGACWSII 8 22 498.2343327229172 NaN 0 498.2342224121094 PEAK HCD FTMS 0 0 0 3113 8530.0009765625 0.5850610097129259 15 -0.2119121551513672 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))FGAC(Carbamidomethyl (C))WSII_ REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|225|1|anti-sense 0.7936320650641473 0.38822285293237185 2 T 1 -1 6.9897 0 0 0.70287 0 0 497.7080930807969 392.68174158267817 890.3898346634751 0 0 0 0 0 0 0 0 0 T 0.70287 - 1 + NaN NaN 84903.6 NaN 1469 1646 3113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3118 26.394 NaN 15074 35 0 6272.7 0.261 + 31925 VYNTDTDEWE 10 11 636.2568919356961 NaN 0 636.255859375 PEAK HCD FTMS 0 0 0 3113 6324.779296875 0.9246600879705545 -3 0.02944183349609375 5 Unmodified _VYNTDTDEWE_ ENSG00000167487|ENST00000300976|KLHL26 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104964.3 NaN 1470 1646 3113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3119 26.397 NaN 16239 35 0 5082.5 0.261 + -1 NPHYCPTLFK 10 16 638.8106788980688 NaN 0 638.809814453125 PEAK HCD FTMS 0 0 0 3113 4117.14404296875 0.8442740503243511 -3 0.02944183349609375 6 Carbamidomethyl (C) _NPHYC(Carbamidomethyl (C))PTLFK_ REV__chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;REV__ENSG00000175063|ENST00000356455|UBE2C;REV__nc|ENSG00000175063|O00762-2|UBE2C;REV__nc|ENSG00000175063|O00762-3|UBE2C 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88383.2 NaN 1471 1646 3113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3121 26.403 NaN 40956 35 0 5202.9 0.327 -1 DASQPEATM 9 30 483.19788928646983 964.3812256397397 2 483.1973876953125 MULTI HCD FTMS 0 0 0 3120 23854.83984375 0.20567398315496782 -10 0.11901664733886719 1 Oxidation (M) _DASQPEATM(Oxidation (M))_ ENSG00000239887|ENST00000458626|C1orf226;nc|nan|A1L170-2|C1orf226 18.1463463914782 0.20357593197100715 2 AT{M(Oxidation (M))|F} 3 -1 28.812 0 0 2.9876 0 0 627.2522411200116 0 627.2522411200116 0 20.07515625508539 0 0 0 0.5 0 0 0 AT{M(Oxidation (M))|F} 2.9876 + + 23 + NaN NaN 90669.5 NaN 1472 1647 3120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3123 26.41 NaN 227960 35 0 40328 0.327 + 22353 QPMQPTPSM 9 42 524.7253770472984 1047.4362011613966 2 524.7254638671875 MULTI HCD FTMS 0 0 0 3122 89579.609375 0.8736777138154762 -1 0.00762176513671875 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 52.268347100219714 0.028397529699942435 2 PS{M(Oxidation (M))|F} 3 6 40.005 0 0 3.8193 0 0 698.3058857852276 0 698.3058857852276 0 33.53917193908117 0 0 0 1 0 0.3807196863200844 0 + PS{M(Oxidation (M))|F} 3.8193 + + 25 + NaN NaN 119532.2 NaN 1473 1648 3122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3124 26.415 NaN 63830 35 0 5018.4 0.261 + -1 DHRQLAALS 9 35 526.7778177067554 1051.5410824803107 2 526.7777709960938 MULTI HCD FTMS 0 0 0 3122 15186.0361328125 0.3876126333618687 13 -0.18085289001464844 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DHRQLAALS_ REV__DCP1B|p.D15H|1|0.33|ENSG00000151065|chr12:2004389-2004389|C/G|missense_variant;REV__DCP1B|p.K183Rfs*2|1|0.32|ENSG00000151065|chr12:1955535-1955535|T/-|frameshift_variant;REV__ENSG00000151065|ENST00000280665|DCP1B;REV__ENST00000537725.1_1_12:2070525-2113588:-|nuORF;REV__ENST00000541700.5_1_12:2062443-2113597:-|nuORF 3.2813086475875832 0.32614229037259 2 HA 2 -1 16.454 0 0 1.5647 0 0 0 840.422474898657 840.422474898657 9.463950151760656 0 0 0 0 0 0 0 0 HA 1.5647 - 11 + NaN NaN 95329.6 NaN 1474 1648 3122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3125 26.418 NaN 13860 35 0 3907.2 0.261 -1 LSLCSDQQSHL 11 11 644.3037780643396 1286.593003195479 2 644.3031005859375 MULTI HCD FTMS 0 0 0 3122 6586.5625 0.42339311226618054 -4 0.05246543884277344 3 Carbamidomethyl (C) _LSLC(Carbamidomethyl (C))SDQQSHL_ ENSG00000184500|ENST00000394236|PROS1 0.9622753412299311 0.4147004537482263 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97805 NaN 1475 1648 3122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3127 26.424 NaN 37055 35 0 4187.1 0.327 -1 ESLMTHAM 8 27 476.1984793406867 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 3126 12945.580078125 0.6136242316200289 -66 0.7476692199707031 1 2 Oxidation (M) _ESLM(Oxidation (M))THAM(Oxidation (M))_ ENSG00000108578|ENST00000261714|BLMH 2.8892196856762586 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.73546 0 0 714.2991975956328 162.02277551822502 876.3219731138578 0 0 0 0 0 0 0 0 0 A 0.73546 + + 2 + NaN NaN 95214.8 NaN 1476 1649 3126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3128 26.428 NaN 19179 35 0 5829.4 0.261 -1 RMWLQCRQ 8 17 568.7779813374842 NaN 0 568.7771606445312 PEAK HCD FTMS 0 0 0 3126 3923.64404296875 0.7014058977421631 1 -0.013462066650390625 2 Oxidation (M) _RM(Oxidation (M))WLQCRQ_ ENST00000321892.8_1_17:65942259-65942382:+|nuORF 0.6903765706972694 0.38822285293237185 2 Q 1 -1 2.4743 0 0 0.21789 0 0 504.74851530993084 499.7083834283813 1004.4568987383121 0 0 0 0 0 0 0 0 0 Q 0.21789 + + 1 + NaN NaN 96476.5 NaN 1477 1649 3126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3129 26.432 NaN 35600 35 0 6708.1 0.261 -1 PLGMELGPDNH 11 21 598.2738339039021 NaN 0 598.2745361328125 PEAK HCD FTMS 0 0 0 3126 6328.3203125 1 0 0 3 Oxidation (M) _PLGM(Oxidation (M))ELGPDNH_ ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 0.26902006276349055 0.3413570110244116 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98357.7 NaN 1478 1649 3126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3131 26.437 NaN 334700 35 0 27282 0.327 + 26030 SPEEKQEML 9 66 553.7553535910436 1105.496154248887 2 553.7554321289062 MULTI HCD FTMS 0 0 0 3130 181187.484375 0.6270363542688656 14 -0.1890430450439453 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 107.5634045930896 0.0033401844687379516 2 [PS]EEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 79.778 0 0 7.2165 7.2165 87.788 0 0 0 4.088709367037282 4.088709367037282 4.088709367037282 4.088709367037282 0 2.504432191740108 0 1.392159058960253 0 + + [PS]EEKQE{M(Oxidation (M))|F}{I|L};SPEEKQE{M(Oxidation (M))|F}{I|L};[EP]SEKQE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};SPEEK[AG]E{M(Oxidation (M))|F}{I|L};[EP]SEK[AG]E{M(Oxidation (M))|F}{I|L};[EP]ESKQE{M(Oxidation (M))|F}{I|L};SPEEKGA{M(Oxidation (M))|F}E{I|L};[EP]ESK[AG]E{M(Oxidation (M))|F}{I|L};[PS]EE{[NV]|[RG]}[TA]{M(Oxidation (M))|F}{I|L} 7.2165;6.8466;6.56;6.3835;6.0137;5.727;5.2187;4.9165;4.3858;4.1359 +;+;-;-;-;-;-;-;-;- + 881 NaN NaN 135976.2 NaN 1479 1650 3130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3132 26.442 NaN 31929 35 0 5842.2 0.261 -1 0 19 469.32873586443475 468.32145939783476 1 469.32830810546875 MULTI HCD FTMS 0 0 0 3130 10351.2060546875 0.44520639429121583 -64 0.7275371551513672 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94474.2 NaN 1480 1650 3130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3133 26.445 NaN 9357.4 35 0 2416.3 0.261 + -1 SGYCYCQYR 9 8 600.2349332311985 NaN 0 600.23583984375 PEAK HCD FTMS 0 0 0 3130 2063.22705078125 0.2251971512792649 -1 0.013462066650390625 3 Carbamidomethyl (C) _SGYCYC(Carbamidomethyl (C))QYR_ REV__FN1|p.R592S|1|0.17|ENSG00000115414|chr2:215419287-215419287|G/T|missense_variant 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90202.2 NaN 1481 1650 3130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3134 26.449 NaN 33052 35 0 9474.8 0.262 + 33909 YLPPPYML 8 22 497.25949567216503 992.5044384111301 2 497.27813720703125 MULTI HCD FTMS 0 0 0 3130 2094.539794921875 0.1408562360054732 -5 0.07107162475585938 4 Unmodified _YLPPPYML_ REV__ENSG00000109511|ENST00000359299|ANXA10 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82975 NaN 1482 1650 3130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3136 26.454 NaN 22840 35 0 3962 0.327 + 8814 HKCQLFYWY 9 15 644.3037780643396 1286.593003195479 2 644.3048095703125 MULTI HCD FTMS 0 0 0 3135 15504.11328125 0.9966252920359994 -1 0.016817092895507812 1 Unmodified _HKCQLFYWY_ REV__ENSG00000106246|ENST00000292478|PTCD1;REV__ENST00000485746.1_1_7:99030561-99032532:-|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96085.8 NaN 1483 1651 3135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3137 26.459 NaN 23646 35 0 3215.2 0.357 -1 RFRFSPMT 8 19 529.2664859128528 NaN 0 529.275390625 PEAK HCD FTMS 0 0 0 3135 3525.30517578125 1 0 0 2 Oxidation (M) _RFRFSPM(Oxidation (M))T_ nc|ENSG00000107105|Q12926-2|ELAVL2 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94959.9 NaN 1484 1651 3135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3138 26.464 NaN 16723 35 0 2895.5 0.261 + 26389 SSSPHAPESE 10 11 514.2201876488857 1026.4258223645713 2 514.2623291015625 MULTI HCD FTMS 0 0 0 3135 1789.519287109375 0.11946481883338482 -7 0.09600448608398438 3 Unmodified _SSSPHAPESE_ ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91951.6 NaN 1485 1651 3135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3139 26.467 NaN 74270 35 0 11849 0.262 -1 0 32 400.3501892089844 NaN 0 400.3501892089844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102382.5 NaN 1486 1651 3135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3141 26.473 NaN 222530 35 0 31862 0.327 -1 VAAKDVVM 8 44 424.73113561170095 847.4477182902019 2 424.73089599609375 MULTI HCD FTMS 0 0 0 3140 103244.359375 0.554902768299817 4 -0.05702018737792969 1 Oxidation (M) _VAAKDVVM(Oxidation (M))_ ENSG00000135372|ENST00000257829|NAT10;nc|ENSG00000135372|Q9H0A0-2|NAT10 29.081581746732265 0.3711897268585781 2 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 8 -1 + 49.659 0 0 5.8598 5.8598 92.886 0 0 0 49.65858457933251 1.9897000433601875 1.9897000433601875 49.65858457933251 0 0.805462187404089 1.3979400086720375 0 0 VAA{[QN]|[E{I|L}]|[KN]}[KA]{M(Oxidation (M))|F} 5.8598 - 24 + NaN NaN 112558.6 NaN 1487 1652 3140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3142 26.477 NaN 28927 35 0 5001.8 0.261 + 33680 YKLPTSKKK 9 22 546.8423710572768 1091.6701891813534 2 546.8424072265625 MULTI HCD FTMS 0 0 0 3140 15903.7314453125 0.783492035481337 5 -0.07047462463378906 2 Unmodified _YKLPTSKKK_ REV__ENSG00000165671|ENST00000439151|NSD1;REV__nc|ENSG00000165671|Q96L73-2|NSD1;REV__NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;REV__NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;REV__NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;REV__NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;REV__NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;REV__NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;REV__NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;REV__NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant;REV__NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;REV__NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant;REV__NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;REV__NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;REV__NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;REV__NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;REV__NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;REV__NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;REV__NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant 0.45834013312273997 0.3475424938045562 2 D 1 -1 0.9691 0 0 0.088772 0 0 403.14652082373465 570.4690035455686 973.6155243693033 0 0 0 0 0 0 0 0 0 D 0.088772 - 1 + NaN NaN 93486.5 NaN 1488 1652 3140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3143 26.48 NaN 37765 35 0 3302.1 0.261 -1 WQRFPCCC 8 29 550.2171636470156 NaN 0 550.2169799804688 PEAK HCD FTMS 0 0 0 3140 8883.0390625 0.5795748160011581 24 -0.30946922302246094 3 Carbamidomethyl (C) _WQRFPC(Carbamidomethyl (C))CC_ ENST00000556553.5_1_14:88851807-88857770:+|nuORF 0.6903765706972694 0.38822285293237185 2 T 1 -1 0.71334 0 0 0.064942 0 0 508.64311528055606 485.7163485162719 994.359463796828 0 0 0 0 0 0 0 0 0 T 0.064942 - 2 + NaN NaN 95048.8 NaN 1489 1652 3140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3144 26.484 NaN 50078 35 0 10807 0.261 + 30581 VNSGTISSHS 10 23 494.73621827407015 NaN 0 494.736083984375 PEAK HCD FTMS 0 0 0 3140 4287.96923828125 0.5006744065974514 -2 0.035243988037109375 4 Unmodified _VNSGTISSHS_ REV__ENST00000266000.10_2_6:33289121-33289671:-|nuORF;REV__ENST00000414083.6_2_6:33289124-33290733:-|nuORF 3.5964929083625545 0.337106189561315 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88420 NaN 1490 1652 3140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3146 26.489 NaN 27515 35 0 5396.1 0.327 + 26390 SSSPHAPESE 10 20 514.2201876488857 1026.4258223645713 2 514.2196655273438 MULTI HCD FTMS 0 0 0 3145 6825.548828125 0.4556603329531688 -5 0.07873344421386719 1 Unmodified _SSSPHAPESE_ ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF 5.731851221503515 0.44496410492002586 2 SE 2 8 25.969 0 0 2.5301 0 0 792.3393421857437 0 792.3393421857437 0 22.47425010840047 0 0 0 0.5 0 0 0 + SE 2.5301 + + 3 NaN NaN 82371.7 NaN 1491 1653 3145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3147 26.494 NaN 34054 35 0 10214 0.261 + 35312 YWLLCYPV 8 14 528.7647332353189 NaN 0 529.2344360351562 PEAK HCD FTMS 0 0 0 3145 3510.720703125 0.7058635729167423 -4 0.06547355651855469 2 Unmodified _YWLLCYPV_ REV__ENST00000328945.6_1_16:82033487-82033676:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81448.5 NaN 1492 1653 3145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3149 26.499 NaN 30580 35 0 4594 0.327 + -1 AMMMLMKL 8 17 492.7407905183475 983.4670281034951 2 493.74322509765625 MULTI HCD FTMS 0 0 0 3148 16452.953125 0.10817794790555854 -21 0.2620887756347656 1 Oxidation (M) _AMM(Oxidation (M))MLMKL_ REV__ENSG00000179091|ENST00000318911|CYC1;REV__ENST00000533444.1_1_8:145150729-145152236:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92262.9 NaN 1493 1654 3148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3150 26.504 NaN 29961 35 0 4142.6 0.261 + 14466 LEVMFVFP 8 18 491.25935841419886 NaN 0 491.25921630859375 PEAK HCD FTMS 0 0 0 3148 6350.88671875 0.5643524884744078 -1 0.0101470947265625 2 Unmodified _LEVMFVFP_ REV__ENST00000599227.5_2_19:58772663-58772768:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107373.6 NaN 1494 1654 3148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3151 26.507 NaN 44663 35 0 11273 0.261 + 1886 CYHCAQKG 8 20 455.1886897963959 NaN 0 455.18890380859375 PEAK HCD FTMS 0 0 0 3148 7356.2099609375 0.5688537867594724 14 -0.15846824645996094 3 Unmodified _CYHCAQKG_ ENSG00000147905|ENST00000336755|ZCCHC7;ENST00000481507.5_1_9:37326993-37357262:+|nuORF;GLIPR2-ZCCHC7|1|fusion;SEC23B-ZCCHC7|1|fusion;SEC23B-ZCCHC7|2|fusion 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88382.2 NaN 1495 1654 3148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3153 26.513 NaN 53925 35 0 6070.8 0.327 + 9044 HPESERISM 9 29 543.2558073734853 1084.4970618137704 2 543.2556762695312 MULTI HCD FTMS 0 0 0 3152 21473.53515625 0.13637297078775845 15 -0.17860984802246094 1 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 5.731851221503515 0.3075653528928475 2 HPE 3 6 31.198 0 0 2.8767 0 0 0 718.3202456286812 718.3202456286812 26.593793813122062 0 0 0 0 0.5 0 0 0 + HPE 2.8767 + + 6 + NaN NaN 99142.7 NaN 1496 1655 3152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3154 26.517 NaN 92154 35 0 12233 0.263 + 26503 SVHMFVELNK 10 36 401.8778842771242 NaN 0 401.8782653808594 PEAK HCD FTMS 0 0 0 3152 12302.2548828125 0.122472999085743 877 -18.923765182495117 2 Unmodified _SVHMFVELNK_ REV__ENSG00000197601|ENST00000354817|FAR1;REV__ENST00000524933.1_1_11:13716477-13732426:+|nuORF 3.2813086475875832 0.33737594360511275 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102711.5 NaN 1497 1655 3152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3155 26.521 NaN 43439 35 0 6567.2 0.261 + 35095 YVANVGTNR 9 27 497.25949567216503 992.5044384111301 2 497.25970458984375 MULTI HCD FTMS 0 0 0 3152 14870.0537109375 1 0 0 3 Unmodified _YVANVGTNR_ ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 3.5964929083625545 0.32375295897743744 2 G 1 8 3.4949 0 0 0.35212 0 0 495.7566489597613 436.6938875787719 932.4505365385332 0 0 0 0 0 0 0 0 0 + G 0.35212 + + 1 + NaN NaN 83697.8 NaN 1498 1655 3152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3156 26.524 NaN 7516.5 35 0 3794.2 0.261 + 12636 KWECEEETPE 10 6 640.2583898713649 NaN 0 640.2578735351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _KWECEEETPE_ REV__ENSG00000187109|ENST00000618691|NAP1L1;REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF;REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF;REV__nc|ENSG00000187109|P55209-2|NAP1L1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78478.3 NaN 1499 1655 3152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3158 26.53 NaN 164110 35 0 14980 0.327 + 19639 NVEEADAAM 9 33 483.19788928646983 964.3812256397397 2 483.1974792480469 MULTI HCD FTMS 0 0 0 3157 104677.6171875 0.9025196821753048 -1 0.016828536987304688 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 89.40071534611396 0.0045416704840156395 2 {[NV]|[RG]}EEADAA{M(Oxidation (M))|F} 9 0 + 79.703 0 0 8.2647 8.2647 93.321 0 0 0 3.438265792396251 3.438265792396251 3.438265792396251 9.771212547196626 0 2.7302046884880937 0 0.3807196863200844 0 + + {[NV]|[RG]}EEADAA{M(Oxidation (M))|F};{[NV]|[RG]}EEAEGA{M(Oxidation (M))|F};{[NV]|[RG]}EEAEQ{M(Oxidation (M))|F} 8.2647;7.2515;6.1393 +;-;- + 177 + NaN NaN 110139.2 NaN 1500 1656 3157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3159 26.534 NaN 38204 35 0 5935.1 0.261 + 12262 KLNENDKL 8 24 487.26936464798376 972.5241763627675 2 487.2698669433594 MULTI HCD FTMS 0 0 0 3157 15788.26171875 0.44754232324115917 -7 0.10572624206542969 2 Unmodified _KLNENDKL_ REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 6.723162845929126 0.5320176132289695 2 K{I|L} 2 -1 25.969 0 0 2.6703 0 0 713.3339100568375 0 713.3339100568375 0 25.969100130080562 0 0 0 0.5 0 0 0 K{I|L} 2.6703 + + 5 NaN NaN 107285.4 NaN 1501 1656 3157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3160 26.537 NaN 29485 35 0 7521.8 0.261 + -1 SPYVCSVVM 9 17 500.72938690998285 NaN 0 500.7298278808594 PEAK HCD FTMS 0 0 0 3157 4537.87646484375 0.6963008788001435 1 -0.013454437255859375 3 Oxidation (M) _SPYVCSVVM(Oxidation (M))_ REV__ENSG00000163605|ENST00000356692|PPP4R2;REV__ENST00000429866.1_1_3:195664216-195664672:+|nuORF;REV__ENST00000470976.1_1_3:73045993-73110212:+|nuORF;REV__ENST00000504656.1_1_5:289217-290334:-|nuORF;REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2;REV__nc|ENSG00000163605|Q9NY27-3|PPP4R2 1.844237919475145 0.28630992268396543 2 S 1 -1 6.9897 0 0 0.69936 0 0 249.03334549789696 660.3595675104124 909.3929130083093 0 0 0 0 0 0 0 0 0 S 0.69936 + + 1 + NaN NaN 96371.1 NaN 1502 1656 3157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3162 26.543 NaN 133750 35 0 22222 0.327 -1 QPMQPTPSM 9 30 524.7253770472984 1047.4362011613966 2 524.7254028320312 MULTI HCD FTMS 0 0 0 3161 55026.23046875 0.5366756069963159 8 -0.09078407287597656 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.0994 0 0 882.3908348057311 0 882.3908348057311 0 11.532125137753438 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0994 + + 14 + NaN NaN 105727.9 NaN 1503 1657 3161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3163 26.547 NaN 34254 35 0 5473.1 0.261 + 25413 SEQSRNAVEEL 11 29 631.3047128343869 1260.5948727355737 2 631.3052368164062 MULTI HCD FTMS 0 0 0 3161 11839.189453125 0.15385720673276954 -11 0.1634998321533203 2 Unmodified _SEQSRNAVEEL_ REV__ENSG00000161681|ENST00000293441|SHANK1;REV__nc|ENSG00000161681|Q9Y566-3|SHANK1 0.9622753412299311 0.4147004537482263 2 SYY 3 -1 10.458 0 0 0.82957 0 0 829.4278949788942 0 829.4278949788942 0 10.45757490560675 0 0 0 0 0 0 0 SYY 0.82957 - 2 NaN NaN 87599.8 NaN 1504 1657 3161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3164 26.551 NaN 37798 35 0 7499 0.261 -1 FHDMMDWE 8 16 563.7017269754411 NaN 0 563.7019653320312 PEAK HCD FTMS 0 0 0 3161 3838.45263671875 0.413959656322666 7 -0.08332443237304688 3 Oxidation (M) _FHDM(Oxidation (M))MDWE_ DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;ENSG00000128512|ENST00000428084|DOCK4;ENST00000469898.1_7:111428716-111462476:-|nuORF;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 4.75600775471527 0.38822285293237185 2 D 1 -1 11.99 0 0 1.0654 0 0 333.1371442811572 674.2058199518186 1007.3429642329759 0 0 0 0 0 0.5 0 0 0 D 1.0654 + + 1 + NaN NaN 104510 NaN 1505 1657 3161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3166 26.556 NaN 43922 35 0 7236.3 0.327 + -1 MERMETFRD 9 25 410.8462377489559 1229.5168838470677 3 410.84600830078125 MULTI HCD FTMS 0 0 0 3165 10254.6533203125 0.9500303263776879 1 -0.010160446166992188 1 Oxidation (M) _M(Oxidation (M))ERMETFRD_ REV__ENSG00000071243|ENST00000315870|ING3;REV__nc|ENSG00000071243|Q9NXR8-2|ING3;REV__nc|ENSG00000071243|Q9NXR8-3|ING3 0.26902006276349055 0.3489776809129786 2 {I|L} 1 -1 5.4846 0 0 0.44607 0 0 966.4864405871052 146.9206942193969 1113.4071348065022 0 0 0 0 0 0 0 0 0 {I|L} 0.44607 - 2 + NaN NaN 102184.4 NaN 1506 1658 3165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3167 26.561 NaN 37608 35 0 10288 0.261 + 5425 FHPVKRAC 8 18 479.2583553147605 NaN 0 479.2587890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FHPVKRAC_ REV__ENSG00000196184|ENST00000423932|OR10J1;REV__nc|ENSG00000196184|P30954|OR10J1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91369.3 NaN 1507 1658 3165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3169 26.566 NaN 194560 35 0 15800 0.327 + 26031 SPEEKQEML 9 55 553.7553535910436 1105.496154248887 2 553.755615234375 MULTI HCD FTMS 0 0 0 3168 102313.296875 0.3540760935393837 23 -0.2942237854003906 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 42.835182525472874 0.05232970119408505 2 [PS]EEKQE{M(Oxidation (M))|F}{I|L} 9 0 + 54.191 0 0 4.902 4.902 84.237 0 0 0 4.762036441594191 38.61818737241734 4.762036441594191 5.026975159433533 0 2.1861818737241734 0 0.4247425010840047 0 + + [PS]EEKQE{M(Oxidation (M))|F}{I|L};SPEEKQE{M(Oxidation (M))|F}{I|L};[PS]EEK[AG]E{M(Oxidation (M))|F}{I|L};SPEE[KG]AE{M(Oxidation (M))|F}{I|L};SPEEKDAA{M(Oxidation (M))|F}{I|L} 4.902;4.4473;4.0691;4.024;3.9858 +;+;-;-;- + 217 NaN NaN 121018.1 NaN 1508 1659 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3170 26.571 NaN 41338 35 0 4708.2 0.261 + -1 LECPTDAM 8 22 476.6909526679123 NaN 0 476.69073486328125 PEAK HCD FTMS 0 0 0 3168 8538.87890625 0.4442767700546954 13 -0.14815521240234375 2 Carbamidomethyl (C),Oxidation (M) _LEC(Carbamidomethyl (C))PTDAM(Oxidation (M))_ REV__ENSG00000139718|ENST00000604567|SETD1B;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B 5.230669730166228 0.38822285293237185 2 A 1 -1 11.99 0 0 1.2603 0 0 165.04585884569798 712.2656344049436 877.3114932506417 0 0 0 0 0 0.5 0 0 0 A 1.2603 + + 1 + NaN NaN 98311.9 NaN 1509 1659 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3171 26.574 NaN 36344 35 0 5193.5 0.261 + -1 WLLYPTML 8 24 526.7778177067554 1051.5410824803107 2 526.777587890625 MULTI HCD FTMS 0 0 0 3168 7013.955078125 0.17902615102038294 24 -0.30195045471191406 3 Oxidation (M) _WLLYPTM(Oxidation (M))L_ REV__ENST00000399640.3_1_8:134488611-134488734:-|nuORF 0.6903765706972694 0.5409681170271811 2 CQ 2 -1 3.1876 0 0 0.30313 0 0 440.83491900550445 376.63080774478755 817.465726750292 0 0 0 0 0 0 0 0 0 CQ 0.30313 - 3 + NaN NaN 85517.9 NaN 1510 1659 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3172 26.578 NaN 6130 35 0 3186.9 0.261 + -1 QCCEQALYE 9 4 600.736572265625 NaN 0 600.736572265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))C(Carbamidomethyl (C))EQALYE_ REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103980.3 NaN 1511 1659 3168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3174 26.583 NaN 12000 35 0 2036.9 0.411 + -1 PVSMPCTHRIM 11 19 644.3037780643396 1286.593003195479 2 644.3038330078125 MULTI HCD FTMS 0 0 0 3173 4858.685546875 0.3123228535695388 8 -0.07472991943359375 1 Oxidation (M) _PVSMPCTHRIM(Oxidation (M))_ REV__nc|ENSG00000233013|P0CG42|FAM157B;REV__nc|ENSG00000236438|C9JC47|FAM157A;REV__nc|ENSG00000260528|P0CG43|FAM157C 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87448.5 NaN 1512 1660 3173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3176 26.591 NaN 55413 35 0 6157.1 0.327 + 27612 TAHIEREE 8 32 492.7407905183475 983.4670281034951 2 492.740966796875 MULTI HCD FTMS 0 0 0 3175 33510.1640625 0.031615517248699265 -15 0.2119121551513672 1 Unmodified _TAHIEREE_ REV__ENSG00000107960|ENST00000224950|STN1 7.910154910731844 0.5302565402355366 2 H[PG] 3 -1 12.447 0 0 1.2657 0 0 674.3232425583764 0 674.3232425583764 0 12.447274948966937 0 0 0 0.5 0 0 0 H[PG] 1.2657 - 5 + NaN NaN 88210.6 NaN 1513 1661 3175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3177 26.596 NaN 31073 35 0 4946.5 0.261 -1 0 19 469.32873586443475 468.32145939783476 1 469.3285217285156 MULTI HCD FTMS 0 0 0 3175 12022.7060546875 0.5170977743029949 -53 0.6246757507324219 2 NaN NaN 2 A 1 -1 4.6041 0 0 0.98311 0 0 140.156433618341 254.10352502994377 394.25995864828474 0 0 0 0 0 0 0 0 0 A 0.98311 - 1 + NaN NaN 81925 NaN 1514 1661 3175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3178 26.599 NaN 38131 35 0 11211 0.261 + -1 RCCWRRWPQWC 11 22 565.2520141601562 NaN 0 565.2520141601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))C(Carbamidomethyl (C))WRRWPQWC_ REV__ENST00000315579.9_1_12:6626009-6626543:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93284.9 NaN 1515 1661 3175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3180 26.605 NaN 272950 35 0 58939 0.327 + 3421 EFGHWTYE 8 50 534.7244202722217 1067.4342876112432 2 534.7244873046875 MULTI HCD FTMS 0 0 0 3179 106887.4296875 0.5873336564437562 4 -0.03711891174316406 1 Unmodified _EFGHWTYE_ ENSG00000155329|ENST00000509437|ZCCHC10;nc|ENSG00000155329|Q8TBK6-2|ZCCHC10 5.230669730166228 0.5342319408533849 2 RYQ 3 7 7.7917 0 0 0.72994 0 0 169.04184203261872 448.14707361392817 617.1889156465469 0 0 0 0 0 0 0 0 0 RYQ 0.72994 - 105 + NaN NaN 132289.1 NaN 1516 1662 3179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3181 26.609 NaN 79953 35 0 9941.8 0.261 -1 STMSTNGIPR 10 35 540.2609524879654 1078.5073520427306 2 540.2608642578125 MULTI HCD FTMS 0 0 0 3179 31012.1015625 0.7310531215555337 -9 0.115386962890625 2 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 8.155526934196011 0.43213520406898465 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 94950.6 NaN 1517 1662 3179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3182 26.613 NaN 31939 35 0 11324 0.261 -1 WQRFPCCC 8 19 550.2171636470156 NaN 0 550.2174682617188 PEAK HCD FTMS 0 0 0 3179 10160.505859375 0.662923271246839 34 -0.45740509033203125 3 Carbamidomethyl (C) _WQRFPC(Carbamidomethyl (C))CC_ ENST00000556553.5_1_14:88851807-88857770:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90176.5 NaN 1518 1662 3179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3184 26.618 NaN 38729 35 0 5460.1 0.411 + 26391 SSSPHAPESE 10 33 514.2201876488857 1026.4258223645713 2 514.220458984375 MULTI HCD FTMS 0 0 0 3183 8817.951171875 0.5886692291153242 5 -0.039791107177734375 1 Unmodified _SSSPHAPESE_ ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF 5.731851221503515 0.44496410492002586 2 SE 2 8 25.969 0 0 2.5301 0 0 792.3392888427611 0 792.3392888427611 0 20.48455006504028 0 0 0 0.5 0 0 0 + SE 2.5301 + + 3 NaN NaN 92997 NaN 1519 1663 3183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3187 26.634 NaN 40059 35 0 5100.7 0.411 + 20838 PHVEASTEES 10 45 543.2413531275721 NaN 0 543.2554931640625 PEAK HCD FTMS 0 0 0 3186 1271.40234375 0.8007976508419989 -1 0.0074596405029296875 1 Unmodified _PHVEASTEES_ REV__BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;REV__BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;REV__ENSG00000139618|ENST00000380152|BRCA2 3.5964929083625545 0.337106189561315 2 PE 2 -1 10.969 0 0 1.0115 0 0 137.03359629245034 718.3180384607709 855.3516347532213 0 0 0 0 0 0 0 0 0 PE 1.0115 - 6 + NaN NaN 93951.7 NaN 1520 1665 3186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3189 26.642 NaN 49996 35 0 7332.4 0.411 + 25312 SCECEGPMC 9 41 479.6428006759613 957.2710484187227 2 479.6427917480469 MULTI HCD FTMS 0 0 0 3188 8578.1796875 0.6289198770921978 -3 0.023681640625 1 Unmodified _SCECEGPMC_ REV__ENST00000553932.5_1_14:39307973-39308237:-|nuORF 0 0.3510170533115441 2 R 1 -1 2.7642 0 0 0.28876 0 0 496.07678679938516 302.06064783267817 798.1374346320633 0 0 0 0 0 0 0 0 0 R 0.28876 - 3 + NaN NaN 101553.3 NaN 1521 1666 3188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3191 26.65 NaN 105770 35 0 8202.6 0.411 + 19640 NVEEADAAM 9 65 483.19788928646983 964.3812256397397 2 483.197509765625 MULTI HCD FTMS 0 0 0 3190 50362.5625 0.43422084990354254 10 -0.14873313903808594 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 99.75527289724121 0.004270341300239591 2 {[NV]|[RG]}EEADAA{M(Oxidation (M))|F} 9 0 + 69.777 0 0 7.2355 7.2355 94.808 0 0 0 0.3836439183553608 0.3836439183553608 0.3836439183553608 37.0609971201948 0 2.638210492164445 0 0.3252574989159953 0 + + {[NV]|[RG]}EEADAA{M(Oxidation (M))|F};{[NV]|[RG]}EEAAAD{M(Oxidation (M))|F};{[NV]|[RG]}E[DV][DG]A{M(Oxidation (M))|F} 7.2355;3.3925;2.7736 +;-;- + 232 + NaN NaN 133269.8 NaN 1522 1667 3190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3193 26.658 NaN 37593 35 0 4899 0.327 + 191 AETGQVQKI 9 25 487.26936464798376 972.5241763627675 2 487.2691345214844 MULTI HCD FTMS 0 0 0 3192 19009.03125 0.538839940693759 5 -0.07698631286621094 1 Unmodified _AETGQVQKI_ CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 12.240655878213236 0.2545997876781172 2 K{I|L} 2 7 20.969 0 0 2.1562 0 0 713.3272572248062 0 713.3272572248062 0 12.016675202793719 0 0 0 0 0 0 0 + K{I|L} 2.1562 + + 7 NaN NaN 87313.2 NaN 1523 1668 3192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3194 26.662 NaN 29689 35 0 5530.2 0.261 + -1 WCAGRESK 8 20 497.23127705629605 NaN 0 497.2314758300781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _WC(Carbamidomethyl (C))AGRESK_ REV__ENST00000532743.5_1_15:40987477-40990979:+|nuORF 0.7936320650641473 0.38822285293237185 2 G 1 -1 5.4846 0 0 0.55263 0 0 495.69859429638274 436.6930025690063 932.391596865389 0 0 0 0 0 0 0 0 0 G 0.55263 + + 1 + NaN NaN 86037.9 NaN 1524 1668 3192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3195 26.666 NaN 24623 35 0 6524.7 0.261 + 3245 EDSAIYLTF 9 13 529.7555226657024 NaN 0 529.7547607421875 PEAK HCD FTMS 0 0 0 3192 1483.2969970703125 0.3147091036403393 1 -0.016590118408203125 3 Unmodified _EDSAIYLTF_ REV__ENSG00000204033|ENST00000372113|LRIT2;REV__nc|ENSG00000204033|A6NDA9-2|LRIT2 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87502.8 NaN 1525 1668 3192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3196 26.669 NaN 16655 35 0 4848.8 0.261 + 25823 SLQRQLWFA 9 17 574.8140308394393 1147.6135087456785 2 574.7611083984375 MULTI HCD FTMS 0 0 0 3192 4882.4765625 0.30778842005519885 -18 0.2206268310546875 4 Unmodified _SLQRQLWFA_ REV__ENSG00000144028|ENST00000323853|SNRNP200;REV__nc|ENSG00000144028|O75643-2|SNRNP200 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88846.4 NaN 1526 1668 3192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3198 26.675 NaN 106130 35 0 22328 0.327 + 4090 ESQSPDTTIQR 11 35 631.3047128343869 1260.5948727355737 2 631.3045654296875 MULTI HCD FTMS 0 0 0 3197 69877.28125 0.9080962298789238 1 -0.016828536987304688 1 Unmodified _ESQSPDTTIQR_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 14.957161354070239 0.3267601744939039 2 S[DP]TT{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 8 3 23.887 0 0 1.8949 0 0 344.1390890947378 0 344.1390890947378 0 12.192737604564028 0 0 0 0.3252574989159953 0 0 0 + S[DP]TT{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 1.8949 + + 25 + NaN NaN 114864.9 NaN 1527 1669 3197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3199 26.679 NaN 40655 35 0 7369.6 0.262 -1 QPMQPTPSM 9 9 524.7253770472984 1047.4362011613966 2 524.7254028320312 MULTI HCD FTMS 0 0 0 3197 15723.43359375 0.1533520140505408 20 -0.2915973663330078 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92835.2 NaN 1528 1669 3197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3200 26.682 NaN 70032 35 0 14505 0.263 + -1 SVPFPLHMIF 10 36 401.8778842771242 NaN 0 401.8779602050781 PEAK HCD FTMS 0 0 0 3197 13128.7978515625 0.13070150656021204 891 -19.46736717224121 3 Oxidation (M) _SVPFPLHM(Oxidation (M))IF_ REV__ENST00000563500.5_3_15:74326748-74326994:+|nuORF 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92928.3 NaN 1529 1669 3197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3201 26.686 NaN 46927 35 0 7600.5 0.261 + -1 HCHVAEPC 8 26 476.6909526679123 NaN 0 476.74578857421875 PEAK HCD FTMS 0 0 0 3197 8223.83203125 0.42788492171282744 23 -0.34534645080566406 4 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HVAEPC_ REV__ENST00000456883.6_3_12:133405053-133405404:-|nuORF 2.577480529830294 0.38822285293237185 2 A 1 -1 4.6041 0 0 0.48394 0 0 493.20321436412826 384.0960787408813 877.2992931050096 0 0 0 0 0 0 0 0 0 A 0.48394 + + 3 + NaN NaN 108326.1 NaN 1530 1669 3197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3203 26.691 NaN 141040 35 0 9824.9 0.327 -1 SPEEKQEML 9 47 553.7553535910436 1105.496154248887 2 553.7554321289062 MULTI HCD FTMS 0 0 0 3202 71446.7578125 0.24725612090490504 34 -0.48630332946777344 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 24.881564428377168 0.14538514251145815 2 [EP]SE[KQ]E{M(Oxidation (M))|F}{I|L} 9 -1 + 31.026 0 0 2.8065 2.8065 88.376 0 0 0 0.5758278102592165 18.819999665787183 0.5758278102592165 31.02622485006798 0 1.4247425010840047 0 0 0 [EP]SE[KQ]E{M(Oxidation (M))|F}{I|L} 2.8065 - 88 NaN NaN 106545.2 NaN 1531 1670 3202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3204 26.696 NaN 16138 35 0 4501 0.261 -1 SWNQCAMTW 9 16 600.2336217503843 NaN 0 600.234130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _SWNQC(Carbamidomethyl (C))AM(Oxidation (M))TW_ ENST00000409970.5_1_7:24745940-24747777:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87051.9 NaN 1532 1670 3202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3206 26.701 NaN 83620 35 0 15633 0.327 + 9316 HPQPGSQAL 9 24 467.7406104476048 933.4666679620096 2 467.740234375 MULTI HCD FTMS 0 0 0 3205 41385.60546875 0.796760815068758 -2 0.0269775390625 1 Unmodified _HPQPGSQAL_ ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28 11.494710602746466 0.2610445893512368 2 QC{I|L} 3 7 32.435 0 0 3.4747 0 0 571.2963783744866 0 571.2963783744866 0 32.43501263708417 0 0 0 0.9247425010840047 0 0 0 QC{I|L} 3.4747 - 10 NaN NaN 94600.7 NaN 1533 1671 3205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3207 26.706 NaN 33018 35 0 3658.1 0.261 -1 EADRTAIHEVM 11 23 644.3038208373608 1286.5930887415216 2 644.3035278320312 MULTI HCD FTMS 0 0 0 3205 16785.71875 0.8248275324614999 1 -0.013294219970703125 2 Oxidation (M) _EADRTAIHEVM(Oxidation (M))_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 3.876331618118854 0.4019203928379901 2 HE[{M(Oxidation (M))|F}V] 4 -1 20.005 0 0 1.5549 0 0 756.3764515607437 0 756.3764515607437 0 20.00508444608478 0 0 0 0.3807196863200844 0 0 0 HE[{M(Oxidation (M))|F}V] 1.5549 + + 5 NaN NaN 85687.3 NaN 1534 1671 3205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3208 26.709 NaN 41156 35 0 9077.9 0.262 -1 CCRRCCSHRRC 11 25 556.5597114619984 NaN 0 556.30859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))RRC(Carbamidomethyl (C))C(Carbamidomethyl (C))SHRRC(Carbamidomethyl (C))_ ENST00000338447.10_1_11:63706445-63713674:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87098 NaN 1535 1671 3205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3210 26.715 NaN 978460 35 0 102670 0.327 + 27693 TANNDHTVL 9 74 492.7407905183475 983.4670281034951 2 492.7408447265625 MULTI HCD FTMS 0 0 0 3209 788973.0625 0.7443649461012791 -4 0.05686187744140625 1 Unmodified _TANNDHTVL_ ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 93.93812099017352 0.0044227730261779084 2 TANNDHTV{I|L} 9 0 + 93.163 0 0 9.473 9.473 91.12 0 0 0 4.738036593157332 4.738036593157332 4.738036593157332 4.738036593157332 0 2.6861818737241734 1.6989700043360187 0.9749073637206093 0 + + TANNDHTV{I|L};[TA]NNDHTV{I|L};TAGGNDHTV{I|L};TANGGDHTV{I|L};[TA]GGNDHTV{I|L};TAGGGGDHTV{I|L};[TA]NNDHVT{I|L};{[QG]|[NA]}TNDHTV{I|L};[TA]GGNDHVT{I|L};{[QG]|[NA]}[NS]EHTV{I|L} 9.473;8.9912;8.5367;8.5367;8.0549;7.6048;6.7799;6.0405;5.8436;4.0731 +;+;-;-;-;-;-;-;-;- + 381 + NaN NaN 238555.7 NaN 1536 1672 3209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3211 26.719 NaN 52272 35 0 7897.2 0.261 + 28295 TLSNVRVQ 8 34 458.76431046153033 915.5140679898607 2 458.76446533203125 MULTI HCD FTMS 0 0 0 3209 23571.857421875 0.9094915515822292 2 -0.03691673278808594 2 Unmodified _TLSNVRVQ_ REV__DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000198947|P11532-11|DMD;REV__nc|ENSG00000198947|P11532-4|DMD;REV__nc|ENSG00000198947|P11532|DMD 11.640296217721598 0.50814828952472 2 [{I|L}T][NS]V 5 -1 22.192 0 0 2.4239 0 0 0 398.2154940240844 398.2154940240844 22.191512336730028 0 0 0 0 0.5 1.6989700043360187 0 0 [{I|L}T][NS]V 2.4239 + + 6 + NaN NaN 91020.4 NaN 1537 1672 3209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3212 26.723 NaN 33883 35 0 6302.9 0.261 + -1 CPFGHCCW 8 22 562.1996131050678 1122.3846732769355 2 562.1990356445312 MULTI HCD FTMS 0 0 0 3209 10859.2568359375 0.7939047867910511 -12 0.131591796875 3 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 0.7936320650641473 0.540814922690045 2 C(Carbamidomethyl (C)) 1 -1 3.0989 0 0 0.2761 0 0 561.616925329473 397.70380579166255 959.3207311211356 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.2761 + + 1 + NaN NaN 92330.4 NaN 1538 1672 3209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3213 26.726 NaN 25649 35 0 4947.8 0.261 + -1 HECHKCVMN 9 23 607.7460223443029 1213.4774917554057 2 607.746337890625 MULTI HCD FTMS 0 0 0 3209 13838.8662109375 0.8851949371668338 -3 0.040271759033203125 4 2 Carbamidomethyl (C) _HEC(Carbamidomethyl (C))HKC(Carbamidomethyl (C))VMN_ REV__ENSG00000135093|ENST00000257548|USP30;REV__ENST00000467307.1_1_12:109509452-109519261:+|nuORF 0.5247636613948944 0.34703895399870666 2 SV 2 -1 15.969 0 0 1.316 0 0 240.0324977141932 784.3313692682249 1024.3638669824181 0 0 0 0 0 0.5 0 0 0 SV 1.316 - 6 + NaN NaN 94549.7 NaN 1539 1672 3209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3214 26.729 NaN 35438 35 0 11604 0.262 + 21439 PWCFYPNT 8 21 514.2201876488857 1026.4258223645713 2 514.2203979492188 MULTI HCD FTMS 0 0 0 3209 3576.623291015625 0.23876839806886693 14 -0.2039794921875 5 Unmodified _PWCFYPNT_ ENSG00000160182|ENST00000291527|TFF1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102355.8 NaN 1540 1672 3209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3216 26.735 NaN 96615 35 0 18155 0.327 -1 SAKQEMECCL 10 45 405.49987198986366 1213.477786569791 3 405.4997863769531 MULTI HCD FTMS 0 0 0 3215 16134.5791015625 0.4591242169621265 -1 0.020124435424804688 1 Carbamidomethyl (C),Oxidation (M) _SAKQEM(Oxidation (M))EC(Carbamidomethyl (C))CL_ ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF;nc|ENSG00000054654|Q8WXH0|SYNE2 3.3196427980023873 0.4577323075863651 2 Q 1 -1 6.9897 0 0 0.57601 0 0 845.3446821770161 237.05129419498283 1082.395976371999 0 0 0 0 0 0 0 0 0 Q 0.57601 + + 5 + NaN NaN 98356.8 NaN 1541 1673 3215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3217 26.739 NaN 60575 35 0 5326.4 0.261 + 3270 EEAQVRKENQW 11 33 472.90036410527637 1415.679262916029 3 472.9002380371094 MULTI HCD FTMS 0 0 0 3215 12513.4228515625 0.5541891330231762 -3 0.043567657470703125 2 Unmodified _EEAQVRKENQW_ ENSG00000113558|ENST00000353411|SKP1 5.40270961882225 0.3952262174455162 2 W 1 10 16.99 0 0 1.2001 0 0 1211.5894934841915 0 1211.5894934841915 0 13.494850021680094 0 0 0 0 0 0 0 + W 1.2001 + + 6 + NaN NaN 98814.5 NaN 1542 1673 3215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3218 26.743 NaN 11297 35 0 4198.8 0.261 + 14413 LELCWLIKM 9 11 574.8140308394393 1147.6135087456785 2 574.8148193359375 MULTI HCD FTMS 0 0 0 3215 4285.6708984375 0.2701661457707454 -14 0.16827964782714844 3 Unmodified _LELCWLIKM_ REV__ENST00000307116.6_1_10:74790078-74804739:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82309.6 NaN 1543 1673 3215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3219 26.746 NaN 34948 35 0 11410 0.261 + 18624 MWYPTGHM 8 27 511.71429361746783 NaN 0 511.75006103515625 PEAK HCD FTMS 0 0 0 3215 1676.625732421875 0.15591436493991603 -2 0.03341865539550781 4 Unmodified _MWYPTGHM_ REV__ENSG00000176601|ENST00000392915|MAP3K19;REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19;REV__nc|ENSG00000176601|Q56UN5-4|MAP3K19;REV__nc|ENSG00000176601|Q56UN5-5|MAP3K19;REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88124.2 NaN 1544 1673 3215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3221 26.752 NaN 84999 35 0 11323 0.327 -1 STMSTNGIPR 10 32 540.2609524879654 1078.5073520427306 2 540.2612915039062 MULTI HCD FTMS 0 0 0 3220 31883.044921875 0.7515840056133579 3 -0.0468902587890625 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 18.373094154950223 0.33925629317698053 2 {[MG]|[TS]}{M(Oxidation (M))|F}{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 10 -1 + 10.052 0 0 0.93201 0.93201 85.275 0 0 0 2.191512336730029 1.979823445252416 1.979823445252416 10.051792077260853 0 0.7887254899964358 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F}{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 0.93201 + + 12 + NaN NaN 93673.6 NaN 1545 1674 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3222 26.756 NaN 26855 35 0 5805.3 0.261 + 23035 RDEPTASGY 9 20 498.22484294181316 994.4351329504264 2 498.22515869140625 MULTI HCD FTMS 0 0 0 3220 7478.3466796875 0.529348576170163 1 -0.0201416015625 2 Unmodified _RDEPTASGY_ REV__ENSG00000108823|ENST00000262018|SGCA;REV__nc|ENSG00000108823|Q16586-2|SGCA 1.844237919475145 0.33703635659052655 2 N 1 -1 4.6041 0 0 0.46299 0 0 710.2900961846045 167.07639490299064 877.3664910875951 0 0 0 0 0 0 0 0 0 N 0.46299 - 1 + NaN NaN 83569.7 NaN 1546 1674 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3223 26.76 NaN 26734 35 0 5216.6 0.261 -1 0 17 543.2558073734853 1084.4970618137704 2 543.7435913085938 MULTI HCD FTMS 0 0 0 3220 3995.439208984375 0.05097893280673387 35 -0.48275184631347656 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88860.4 NaN 1547 1674 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3224 26.763 NaN 25332 35 0 3619.4 0.261 -1 LRLMCFHW 8 20 582.2773491730351 1162.54014541287 2 582.7789916992188 MULTI HCD FTMS 0 0 0 3220 1744.641845703125 0.16329819226174316 -8 0.10988807678222656 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LRLM(Oxidation (M))CFHW_ ENST00000361523.8_1_17:40962415-40962475:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101909.7 NaN 1548 1674 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3225 26.766 NaN 36743 35 0 10260 0.261 + -1 VLMCMTSW 8 24 530.2172732560606 NaN 0 530.2174072265625 PEAK HCD FTMS 0 0 0 3220 2141.686767578125 0.2785450834208065 4 -0.05449867248535156 5 Carbamidomethyl (C),2 Oxidation (M) _VLM(Oxidation (M))C(Carbamidomethyl (C))M(Oxidation (M))TSW_ REV__ENSG00000100393|ENST00000263253|EP300;REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86916 NaN 1549 1674 3220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3227 26.772 NaN 26358 35 0 5799.1 0.327 -1 RHQFCSGCY 9 21 607.7460223443029 1213.4774917554057 2 607.7454223632812 MULTI HCD FTMS 0 0 0 3226 15633.693359375 1 0 0 1 2 Carbamidomethyl (C) _RHQFC(Carbamidomethyl (C))SGC(Carbamidomethyl (C))Y_ ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-2|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 0.6014990680409731 0.3464572424761564 2 S 1 -1 11.99 0 0 0.98804 0 0 240.02206070247445 883.4043673150999 1123.4264280175744 0 0 0 0 0 0.5 0 0 0 S 0.98804 + + 1 + NaN NaN 96608.8 NaN 1550 1675 3226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3228 26.776 NaN 40516 35 0 10470 0.261 + 9045 HPESERISM 9 28 543.2558073734853 1084.4970618137704 2 543.7422485351562 MULTI HCD FTMS 0 0 0 3226 5068.50048828125 0.06467042352739702 36 -0.48545074462890625 2 Unmodified _HPESERISM_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 1.4819007175156935 0.3397831423917744 2 E{[ES]|[DT]|[{I|L}C]} 3 6 7.4473 0 0 0.6867 0 0 721.342577049025 0 721.342577049025 0 4.348331157524969 0 0 0 0 0 0 0 + E{[ES]|[DT]|[{I|L}C]} 0.6867 + + 2 NaN NaN 103733.7 NaN 1551 1675 3226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3230 26.782 NaN 30493 35 0 3991.6 0.327 + -1 CWGEHTYF 8 22 550.2171636470156 NaN 0 550.217041015625 PEAK HCD FTMS 0 0 0 3229 10629.1943359375 0.6935029000939428 48 -0.6556358337402344 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94038.9 NaN 1552 1676 3229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3231 26.786 NaN 21429 35 0 6007.6 0.261 + 20463 PASSCWWW 8 16 511.71429361746783 NaN 0 511.7141418457031 PEAK HCD FTMS 0 0 0 3229 5863.65771484375 0.5452788008414409 1 -0.016582489013671875 2 Unmodified _PASSCWWW_ ENST00000259241.6_1_2:129076016-129076103:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87610 NaN 1553 1676 3229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3232 26.79 NaN 16759 35 0 3922.4 0.261 + 19556 NSSDINYQTR 10 16 599.2784745327136 1196.5423961322272 2 599.2791748046875 MULTI HCD FTMS 0 0 0 3229 6250.54638671875 0.15152446565306923 -7 0.10749626159667969 3 Unmodified _NSSDINYQTR_ ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103857.7 NaN 1554 1676 3229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3233 26.793 NaN 27912 35 0 9782.9 0.261 -1 IRPHCHLC 8 14 546.7630004882812 NaN 0 546.7630004882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _IRPHC(Carbamidomethyl (C))HLC(Carbamidomethyl (C))_ ENST00000546481.1_1_12:57881846-57882986:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79626.4 NaN 1555 1676 3229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3235 26.799 NaN 217330 35 0 19772 0.327 + 3368 EEQQALQKKL 10 47 405.56292453636536 1213.6669442092962 3 405.5627136230469 MULTI HCD FTMS 0 0 0 3234 58035.3515625 0.608284216025535 -3 0.0468902587890625 1 Unmodified _EEQQALQKKL_ CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;nc|ENSG00000198467|P07951-2|TPM2 9.38312468134398 0.42334543440173333 2 AQQ[HC] 5 8 26.466 0 0 2.1807 0 0 628.426712858125 0 628.426712858125 0 10.268024924119668 0 0 0 0 0 0 0.4247425010840047 AQQ[HC] 2.1807 - 30 NaN NaN 117644.7 NaN 1556 1677 3234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3237 26.806 NaN 14468 35 0 3438.7 0.411 + 4091 ESQSPDTTIQR 11 18 631.3047128343869 1260.5948727355737 2 631.3046875 MULTI HCD FTMS 0 0 0 3236 9057.419921875 0.1177064810815739 10 -0.1463031768798828 1 Unmodified _ESQSPDTTIQR_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 2.282774691075616 0.408909192180357 2 SYY 3 10 10.458 0 0 0.82957 0 0 829.428026267775 0 829.428026267775 0 4.771212547196626 0 0 0 0 0 0 0 SYY 0.82957 - 9 NaN NaN 84215.2 NaN 1557 1678 3236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3239 26.814 NaN 91535 35 0 6331.8 0.327 -1 SPEEKQEML 9 38 553.7553535910436 1105.496154248887 2 553.75537109375 MULTI HCD FTMS 0 0 0 3238 36557.9609375 0.1265163022977348 43 -0.6061420440673828 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 22.65808497894818 0.16459551161911185 2 [PS]EEK 5 -1 20.56 0 0 1.8598 0 0 0 532.2128389947874 532.2128389947874 1.095756168365014 0 0 0 0 0.3252574989159953 0 0.3494850021680094 0 [PS]EEK 1.8598 + + 24 + NaN NaN 110025 NaN 1558 1679 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3240 26.818 NaN 52398 35 0 7301.2 0.261 + 9638 HTTLHSFH 8 20 490.2410793672 978.4676058012 2 490.2407531738281 MULTI HCD FTMS 0 0 0 3238 13263.51953125 0.6130081996543068 1 -0.023233413696289062 2 Unmodified _HTTLHSFH_ REV__ENSG00000105750|ENST00000328178|ZNF85;REV__nc|ENSG00000105750|Q03923-2|ZNF85 5.230669730166228 0.5342319408533849 2 S{[{M(Oxidation (M))|F}H]|[RQ]} 3 -1 14.705 0 0 1.5029 0 0 589.2997914044937 0 589.2997914044937 0 7.715299873086609 0 0 0 0 0 0.4247425010840047 0 S{[{M(Oxidation (M))|F}H]|[RQ]} 1.5029 + + 2 NaN NaN 90653.6 NaN 1559 1679 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3241 26.822 NaN 34200 35 0 6542.3 0.261 -1 0 23 469.32873586443475 468.32145939783476 1 469.3282775878906 MULTI HCD FTMS 0 0 0 3238 13518.615234375 0.581436975798671 -35 0.45611000061035156 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96301.4 NaN 1560 1679 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3242 26.825 NaN 29702 35 0 5227.5 0.261 + 31254 VVSRESAPIKE 11 26 607.8405676617899 1213.6665823903797 2 607.84033203125 MULTI HCD FTMS 0 0 0 3238 13707.4755859375 0.9051976757113852 -5 0.06251716613769531 4 Unmodified _VVSRESAPIKE_ ENSG00000214193|ENST00000453908|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;nc|ENSG00000214193|A4FU49-4|SH3D21;nc|ENSG00000214193|A4FU49-5|SH3D21;nc|ENSG00000214193|A4FU49|SH3D21 0 0.41892066650488113 2 S 1 10 6.9897 0 0 0.57592 0 0 240.21249411088598 883.3967379205686 1123.6092320314547 0 0 0 0 0 0 0 0 0 + S 0.57592 + + 2 + NaN NaN 89557.3 NaN 1561 1679 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3243 26.829 NaN 24521 35 0 5120.5 0.261 + -1 GMTPGPTGPSM 11 19 524.7253770472984 1047.4362011613966 2 524.7251586914062 MULTI HCD FTMS 0 0 0 3238 5515.9169921875 0.05379721770337662 30 -0.42023468017578125 5 Oxidation (M) _GMTPGPTGPSM(Oxidation (M))_ REV__ENSG00000049618|ENST00000636930|ARID1B;REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B;REV__nc|ENSG00000049618|Q8NFD5-2|ARID1B;REV__nc|ENSG00000049618|Q8NFD5|ARID1B 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88728.9 NaN 1562 1679 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3244 26.832 NaN 42296 35 0 10586 0.261 + -1 METMENYSS 9 22 562.1996131050678 1122.3846732769355 2 562.2005004882812 MULTI HCD FTMS 0 0 0 3238 9301.0263671875 0.6799847785663365 -5 0.06251716613769531 6 2 Oxidation (M) _M(Oxidation (M))ETM(Oxidation (M))ENYSS_ REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;REV__ADGRG4|p.P1831Kfs*16|1|0.04|ENSG00000156920|chrX:136349195-136349196|-/TAAAGCTAGTCAG|frameshift_variant;REV__ENSG00000156920|ENST00000394143|ADGRG4;REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4;REV__nc|ENSG00000156920|Q8IZF6-3|ADGRG4 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92911.9 NaN 1563 1679 3238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3246 26.837 NaN 12366 35 0 5172.8 0.327 + 23072 REFQWHHTF 9 10 644.3038208373608 1286.5930887415216 2 644.3035888671875 MULTI HCD FTMS 0 0 0 3245 1933.518310546875 0.09501047651340559 10 -0.14878082275390625 1 Unmodified _REFQWHHTF_ REV__ENSG00000156697|ENST00000394422|UTP14A;REV__nc|ENSG00000156697|Q9BVJ6-2|UTP14A;REV__nc|ENSG00000156697|Q9BVJ6-3|UTP14A 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84530.6 NaN 1564 1680 3245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3247 26.842 NaN 16181 35 0 3216.7 0.261 -1 CPAWRRFW 8 19 589.7882443674384 1177.5619358016768 2 590.2913208007812 MULTI HCD FTMS 0 0 0 3245 1645.027587890625 0.07792552354870495 -8 0.12266731262207031 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PAWRRFW_ ENST00000468045.5_1_2:27355724-27356007:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91634.4 NaN 1565 1680 3245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3249 26.847 NaN 870160 35 0 89446 0.327 + 27694 TANNDHTVL 9 74 492.7407905183475 983.4670281034951 2 492.74090576171875 MULTI HCD FTMS 0 0 0 3248 737192.8125 0.6955123238352803 5 -0.07116508483886719 1 Unmodified _TANNDHTVL_ ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 107.5634045930896 0.0033401844687379516 2 TANNDHTV{I|L} 9 0 + 96.551 0 0 9.8174 9.8174 91.061 0 0 0 3.82068444291761 3.82068444291761 3.82068444291761 3.82068444291761 0 2.9361818737241734 1.6989700043360187 1.0356668758921828 0 + + TANNDHTV{I|L};[TA]NNDHTV{I|L};TAGGNDHTV{I|L};TANGGDHTV{I|L};[TA]GGNDHTV{I|L};[TA]NGGDHTV{I|L};TAGGGGDHTV{I|L};[TA]NNDHVT{I|L};[TA]GGGGDHTV{I|L};[TA]NGGDHVT{I|L} 9.8174;9.4289;8.8811;8.8811;8.4926;8.4926;7.9493;7.6741;7.1737;6.7378 +;+;-;-;-;-;-;-;-;- + 500 + NaN NaN 213133.1 NaN 1566 1681 3248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3250 26.852 NaN 33460 35 0 3954.2 0.261 -1 MPSASMTRL 9 26 513.2412074114004 1024.4678618896007 2 513.240966796875 MULTI HCD FTMS 0 0 0 3248 13876.08984375 0.4466094388495178 -3 0.04139900207519531 2 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 113135.7 NaN 1567 1681 3248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3251 26.855 NaN 68454 35 0 11721 0.262 + 29591 VAEKEKER 8 30 494.7745636306973 987.5345743281946 2 495.77716064453125 MULTI HCD FTMS 0 0 0 3248 1388.710205078125 0.06376835890604139 -6 0.07575607299804688 3 Unmodified _VAEKEKER_ tr|U7ST80|U7ST80_FUSNUFormiminotetrahydrofolatecyclodeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01323PE=4SV=1 1.844237919475145 0.5392561982033289 2 {[QG]|[NA]}{I|L}E 4 6 13.812 0 0 1.3987 0 0 0 557.3252047174436 557.3252047174436 13.812281309285623 0 0 0 0 0 0 0 0 {[QG]|[NA]}{I|L}E 1.3987 - 3 + NaN NaN 88948.5 NaN 1568 1681 3248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3254 26.868 NaN 57723 35 0 6245.9 0.327 -1 VPTEENEM 8 33 482.69969807809247 963.384843222985 2 482.6999206542969 MULTI HCD FTMS 0 0 0 3253 26230.796875 0.7547176003449966 1 -0.01323699951171875 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 25.399314129420986 0.40691472774782006 2 ENE{M(Oxidation (M))|F} 4 -1 41.855 0 0 4.3445 0 0 426.21141249824376 0 426.21141249824376 0 31.397065965837 0 0 0 0.805462187404089 0 0 0.4247425010840047 ENE{M(Oxidation (M))|F} 4.3445 + + 23 NaN NaN 97681.4 NaN 1569 1683 3253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3255 26.873 NaN 19091 35 0 4156.2 0.261 + 24033 RWPKKSAEF 9 14 574.8140308394393 1147.6135087456785 2 574.8136596679688 MULTI HCD FTMS 0 0 0 3253 11685.2529296875 0.7366313982534145 -4 0.05436134338378906 2 Unmodified _RWPKKSAEF_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85424.3 NaN 1570 1683 3253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3256 26.876 NaN 28877 35 0 6813 0.261 -1 MGCFVYFF 8 14 543.7248589853655 NaN 0 543.7420043945312 PEAK HCD FTMS 0 0 0 3253 4220.6748046875 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))GC(Carbamidomethyl (C))FVYFF_ ENSG00000181045|ENST00000361193|SLC26A11;SLC26A11-OAF|1|fusion 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88643.1 NaN 1571 1683 3253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3258 26.882 NaN 60278 35 0 8478.1 0.327 -1 STMSTNGIPR 10 28 540.2609524879654 1078.5073520427306 2 540.2607421875 MULTI HCD FTMS 0 0 0 3257 26830.15625 0.6324714704953401 13 -0.1904735565185547 1 Oxidation (M) _STM(Oxidation (M))STNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 7.608950283845883 0.4350283211712914 2 {[MG]|[TS]}{M(Oxidation (M))|F} 3 -1 8.9524 0 0 0.83008 0 0 0 740.3717745416624 740.3717745416624 8.952424927286843 0 0 0 0 0 0 0 0 {[MG]|[TS]}{M(Oxidation (M))|F} 0.83008 + + 6 + NaN NaN 85692.7 NaN 1572 1684 3257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3259 26.886 NaN 26436 35 0 5363.7 0.261 + 29662 VARDNEEY 8 23 498.22484294181316 994.4351329504264 2 498.2249755859375 MULTI HCD FTMS 0 0 0 3257 6409.4501953125 0.45368762378157385 11 -0.1637134552001953 2 Unmodified _VARDNEEY_ REV__ENSG00000104112|ENST00000220478|SCG3 0.6903765706972694 0.5409681170271811 2 N 1 -1 3.0989 0 0 0.31163 0 0 497.58367528616697 379.7910250299438 877.3747003161108 0 0 0 0 0 0 0 0 0 N 0.31163 + + 1 + NaN NaN 84244.2 NaN 1573 1684 3257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3260 26.89 NaN 31406 35 0 5716.8 0.261 + -1 WWWWWGQLWMA 11 21 565.2500610351562 NaN 0 565.2500610351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WWWWWGQLWM(Oxidation (M))A_ REV__nc|ENSG00000164808|Q14159-3|SPIDR 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96736.1 NaN 1574 1684 3257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3261 26.893 NaN 14412 35 0 4483.9 0.261 + 23271 RGSRRNPHGDH 11 15 644.8218392390048 NaN 0 644.8217163085938 PEAK HCD FTMS 0 0 0 3257 4186.2197265625 0.554940686492143 2 -0.03694725036621094 4 Unmodified _RGSRRNPHGDH_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87486.1 NaN 1575 1684 3257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3263 26.899 NaN 70409 35 0 7232.3 0.327 + 32932 YAHNGDKSLT 10 30 553.2671728507465 1104.519792768293 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3262 23834.474609375 0.004667539802620499 191 -2.896696090698242 1 Unmodified _YAHNGDKSLT_ ENSG00000150893|ENST00000280481|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2 2.9952420565917617 0.4594494122822477 2 T 1 9 6.9897 0 0 0.63283 0 0 149.1063799186548 851.3443528299222 1000.4507327485769 0 0 0 0 0 0 0 0 0 + T 0.63283 + + 6 + NaN NaN 102429.6 NaN 1576 1685 3262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3264 26.903 NaN 98608 35 0 19796 0.263 + -1 DLMNFYNRC 9 36 416.84239561677134 NaN 0 416.8423767089844 PEAK HCD FTMS 0 0 0 3262 23407.2421875 0.10970182141241919 1258 -28.601364135742188 2 Carbamidomethyl (C),Oxidation (M) _DLM(Oxidation (M))NFYNRC(Carbamidomethyl (C))_ REV__ENSG00000081248|ENST00000362061|CACNA1S 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97421.7 NaN 1577 1685 3262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3265 26.907 NaN 23311 35 0 4462.7 0.261 + 33237 YFFIEVEC 8 10 525.2359665136174 NaN 0 525.2356567382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YFFIEVEC_ ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF;nc|ENSG00000133313|Q96KP4-2|CNDP2 0.6903765706972694 0.38822285293237185 2 Y 1 7 3.0989 0 0 0.29557 0 0 745.5516621758692 136.8239687555297 882.3756309313989 0 0 0 0 0 0 0 0 0 + Y 0.29557 + + 1 + NaN NaN 80650.9 NaN 1578 1685 3262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3266 26.91 NaN 24117 35 0 5892 0.261 + 21875 QCEIQEHAK 9 15 543.2558073734853 1084.4970618137704 2 543.255859375 MULTI HCD FTMS 0 0 0 3262 5512.96435546875 0.03501143717286215 45 -0.5911483764648438 4 Unmodified _QCEIQEHAK_ ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion 0.6014990680409731 0.3464572424761564 2 M 1 9 4.6041 0 0 0.42454 0 0 750.3879442374017 200.05153833560783 950.4394825730095 0 0 0 0 0 0 0 0 0 M 0.42454 - 1 + NaN NaN 84698.8 NaN 1579 1685 3262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3267 26.913 NaN 12129 35 0 4551.1 0.261 -1 VFFILSLMTC 10 10 644.8218392390048 NaN 0 644.822265625 PEAK HCD FTMS 0 0 0 3262 3140.6513671875 0.41633629851786946 3 -0.053890228271484375 5 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))VFFILSLM(Oxidation (M))TC(Carbamidomethyl (C))_ C8A|p.Q15E|1|0.15|ENSG00000157131|chr1:56854944-56854944|C/G|missense_variant;ENSG00000157131|ENST00000361249|C8A 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86359.3 NaN 1580 1685 3262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3269 26.919 NaN 47968 35 0 7047.5 0.327 + 19557 NSSDINYQTR 10 26 599.2784745327136 1196.5423961322272 2 599.2783203125 MULTI HCD FTMS 0 0 0 3268 40509.8984375 0.9820326631676413 3 -0.04734611511230469 1 Unmodified _NSSDINYQTR_ ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12 16.274544907608252 0.35888541478244573 2 [NS]SD{I|L}NYQ{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 40.335 0 0 3.3709 3.3709 84.195 0 0 0 40.334778045573074 7.269987279362624 7.269987279362624 9.164539485499251 0 1.242992819099939 0 0 0 + + [NS]SD{I|L}NYQ{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[NS]SD{I|L}NY[AG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[NS]SD{I|L}GGYQ{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.3709;2.605;2.605 +;-;- + 72 + NaN NaN 106091.8 NaN 1581 1686 3268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3270 26.923 NaN 66338 35 0 14990 0.264 + 20493 PCPSAQFQVVK 11 20 401.8778842771242 NaN 0 401.8778076171875 PEAK HCD FTMS 0 0 0 3268 13505.95703125 0.13445625041075457 908 -19.80405616760254 2 Unmodified _PCPSAQFQVVK_ REV__ENSG00000124232|ENST00000343694|RBPJL;REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL 0.3070304955306653 0.3412491863730806 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90820.2 NaN 1582 1686 3268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3271 26.927 NaN 22782 35 0 5113.1 0.261 + 8768 HHYTEPFR 8 13 543.7581293715364 NaN 0 543.7420654296875 PEAK HCD FTMS 0 0 0 3268 1274.85986328125 0.24893493581202356 3 -0.04734611511230469 3 Unmodified _HHYTEPFR_ REV__ENSG00000147251|ENST00000276202|DOCK11 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90512 NaN 1583 1686 3268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3272 26.93 NaN 18243 35 0 3599.4 0.261 + 17783 METLSICVRL 10 18 582.810416581173 NaN 0 582.77880859375 PEAK HCD FTMS 0 0 0 3268 5026.91015625 0.797829431580419 -1 0.020151138305664062 4 Unmodified _METLSICVRL_ ENSG00000204899|ENST00000377818|MZT1 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80664.4 NaN 1584 1686 3268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3274 26.936 NaN 158950 35 0 18136 0.327 + 1952 DAIEKAVSR 9 41 494.7745636306973 987.5345743281946 2 494.7746276855469 MULTI HCD FTMS 0 0 0 3273 88833.484375 0.9871211467485392 1 -0.016845703125 1 Unmodified _DAIEKAVSR_ ENSG00000138081|ENST00000403359|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11 34.221707139014875 0.09187037853496335 2 DA{I|L}EKAVSR 9 0 + 95.06 0 0 9.6259 9.6259 99.215 0 0 0 88.06987521229523 14.973024840566467 14.973024840566467 95.05957525565542 0 1.4247425010840047 1.5228787452803376 0 0 + + DA{I|L}EKAVSR 9.6259 + + 66 + NaN NaN 107664.8 NaN 1585 1687 3273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3275 26.94 NaN 107250 35 0 11474 0.262 + 3369 EEQQALQKKL 10 39 405.56292453636536 1213.6669442092962 3 405.56280517578125 MULTI HCD FTMS 0 0 0 3273 38526.00390625 0.40380146672278516 7 -0.101806640625 2 Unmodified _EEQQALQKKL_ CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;nc|ENSG00000198467|P07951-2|TPM2 3.2813086475875832 0.45793521633868084 2 QQ[HC] 4 8 16.198 0 0 1.3346 0 0 699.4632875413539 0 699.4632875413539 0 6.73393743112328 0 0 0 0 0 0 0 QQ[HC] 1.3346 - 13 NaN NaN 104013.2 NaN 1586 1687 3273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3276 26.944 NaN 21206 35 0 6897.5 0.261 -1 MAMPHWLRH 9 9 605.7828295491073 1209.5511061650145 2 605.7832641601562 MULTI HCD FTMS 0 0 0 3273 13608.7060546875 0.6610912184686542 -2 0.037044525146484375 3 2 Oxidation (M) _M(Oxidation (M))AM(Oxidation (M))PHWLRH_ ENSG00000111012|ENST00000228606|CYP27B1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87058.4 NaN 1587 1687 3273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3277 26.947 NaN 43760 35 0 10872 0.263 + -1 PHLCKCAM 8 29 480.2169708252216 NaN 0 480.21710205078125 PEAK HCD FTMS 0 0 0 3273 6670.11962890625 1 0 0 4 Carbamidomethyl (C) _PHLC(Carbamidomethyl (C))KCAM_ REV__ENST00000570934.5_1_17:4098183-4145738:-|nuORF;REV__UBE2G1-ANKFY1|2|fusion;REV__UBE2G1-ANKFY1|5|fusion 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100722.1 NaN 1588 1687 3273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3279 26.952 NaN 183770 35 0 30249 0.327 -1 TGIFVCEKGPC 11 48 404.1912039859227 1209.5517825579682 3 404.1911315917969 MULTI HCD FTMS 0 0 0 3278 51033.41796875 1 0 0 1 Carbamidomethyl (C) _TGIFVC(Carbamidomethyl (C))EKGPC_ ENSG00000137975|ENST00000370565|CLCA2 4.406150317652783 0.39959678800402487 2 K{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 10.458 0 0 0.86458 0 0 845.3750780254499 0 845.3750780254499 0 4.9730248405664685 0 0 0 0 0 0 0 K{[MS]|[{M(Oxidation (M))|F}A]} 0.86458 - 9 NaN NaN 112525.5 NaN 1589 1688 3278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3280 26.957 NaN 48206 35 0 5697.3 0.261 -1 MMSILATL 8 29 456.2326718935836 910.4507908539672 2 456.2325439453125 MULTI HCD FTMS 0 0 0 3278 25678.890625 0.6835663430353409 -2 0.03373908996582031 2 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))SILATL_ ENSG00000182185|ENST00000471583|RAD51B;ENST00000553595.5_1_14:68331761-69149671:+|nuORF;nc|ENSG00000182185|O15315-1|RAD51B;nc|ENSG00000182185|O15315-4|RAD51B;nc|ENSG00000182185|O15315-5|RAD51B;nc|ENSG00000182185|O15315|RAD51B 7.910154910731844 0.5302565402355366 2 AT{I|L} 3 -1 31.198 0 0 3.4266 0 0 607.2714100568375 0 607.2714100568375 0 16.593793813122062 0 0 0 0.5 0 0 0 AT{I|L} 3.4266 + + 5 NaN NaN 102911.4 NaN 1590 1688 3278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3281 26.961 NaN 39358 35 0 8186.7 0.261 + -1 PLAMVMLHL 9 21 528.7825759175255 1055.550598901851 2 528.7822875976562 MULTI HCD FTMS 0 0 0 3278 14256.7001953125 0.8936603806016983 -2 0.03373908996582031 3 2 Oxidation (M) _PLAM(Oxidation (M))VM(Oxidation (M))LHL_ REV__ENSG00000088756|ENST00000383472|ARHGAP28;REV__nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;REV__nc|ENSG00000088756|Q9P2N2-5|ARHGAP28 2.302733041254933 0.33356062215410776 2 H{I|L} 2 -1 20.969 0 0 1.9866 0 0 787.3975697248062 0 787.3975697248062 0 20.969100130080562 0 0 0 0 0 0 0 H{I|L} 1.9866 + + 1 NaN NaN 98185.9 NaN 1591 1688 3278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3283 26.966 NaN 76036 35 0 9954.8 0.327 + 16498 LTDIMWPII 9 31 551.3043976507834 1100.5942423683666 2 551.30419921875 MULTI HCD FTMS 0 0 0 3282 26322.73828125 0.8571139658733963 1 -0.020122528076171875 1 Unmodified _LTDIMWPII_ ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF;nc|ENSG00000068120|Q13057-2|COASY 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103656.2 NaN 1592 1689 3282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3284 26.971 NaN 74993 35 0 5588.4 0.261 -1 SPEEKQEML 9 43 553.7553535910436 1105.496154248887 2 553.7554931640625 MULTI HCD FTMS 0 0 0 3282 33301.63671875 0.11524712620929996 53 -0.6747493743896484 2 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 7.101721422024254 0.29718071671418667 2 {M(Oxidation (M))|F}{I|L} 2 -1 16.454 0 0 1.4883 0 0 827.3635121076187 0 827.3635121076187 0 5.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.4883 + + 14 NaN NaN 102605.3 NaN 1593 1689 3282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3285 26.974 NaN 79837 35 0 9960.6 0.261 + 13003 KYIQRQETI 9 35 589.8300711224944 1177.6455893117886 2 589.8297119140625 MULTI HCD FTMS 0 0 0 3282 44453.62890625 0.04222610175184834 -10 0.15189170837402344 3 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 15.248480904072842 0.22861284681709862 2 KY{I|L}Q 4 5 28.928 0 0 2.4564 0 0 0 642.3241060846311 642.3241060846311 9.719712763997563 0 0 0 0 0 0 0 0 + KY{I|L}Q 2.4564 + + 24 + NaN NaN 100744.6 NaN 1594 1689 3282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3286 26.977 NaN 29791 35 0 5675.1 0.261 + -1 CPFGHCCW 8 18 562.1996131050678 1122.3846732769355 2 562.1992797851562 MULTI HCD FTMS 0 0 0 3282 7092.41015625 0.5185159958919264 5 -0.07135391235351562 4 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87593.5 NaN 1595 1689 3282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3287 26.981 NaN 46523 35 0 11054 0.261 + 14832 LKAKGTGGGGL 11 26 479.78782623617417 957.5610995391484 2 479.78729248046875 MULTI HCD FTMS 0 0 0 3282 5075.2080078125 0.2886422849614802 -3 0.04734611511230469 5 Unmodified _LKAKGTGGGGL_ ENSG00000077420|ENST00000376236|APBB1IP 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93849 NaN 1596 1689 3282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3289 26.986 NaN 214720 35 0 26107 0.327 + 27695 TANNDHTVL 9 46 492.7407905183475 983.4670281034951 2 492.74078369140625 MULTI HCD FTMS 0 0 0 3288 170745.1875 0.16109134561294391 14 -0.19141197204589844 1 Unmodified _TANNDHTVL_ ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17 45.69961567697781 0.039180348357221985 2 [TA]N 3 6 31.796 0 0 3.233 0 0 0 694.3149508111936 694.3149508111936 -0.7843863980364887 0 -0.7843863980364887 0 0 0.5 1.5228787452803376 0 0.2614393726401688 + [TA]N 3.233 + + 14 + NaN NaN 127204.3 NaN 1597 1690 3288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3290 26.991 NaN 29118 35 0 4561.7 0.261 + 2011 DCLYLNVW 8 18 513.2412074114004 1024.4678618896007 2 513.2410888671875 MULTI HCD FTMS 0 0 0 3288 13024.111328125 0.4191880506155327 6 -0.07586669921875 2 Unmodified _DCLYLNVW_ BCHE|p.E118K|1|0.27|ENSG00000114200|chr3:165830682-165830682|C/T|missense_variant;ENSG00000087085|ENST00000241069|ACHE;ENSG00000114200|ENST00000264381|BCHE;ENST00000442452.1_1_7:100490234-100491508:-|nuORF;nc|ENSG00000087085|P22303-2|ACHE;nc|ENSG00000087085|P22303-3|ACHE;nc|ENSG00000087085|P22303-4|ACHE 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104106.6 NaN 1598 1690 3288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3291 26.994 NaN 54114 35 0 11563 0.261 + 22398 QPRQQYEV 8 34 524.2643742064505 NaN 0 524.2647705078125 PEAK HCD FTMS 0 0 0 3288 5282.48486328125 0.48619525559910637 1 -0.0135345458984375 3 Unmodified _QPRQQYEV_ REV__ENSG00000007001|ENST00000005756|UPP2;REV__nc|ENSG00000007001|O95045-2|UPP2 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93557.9 NaN 1599 1690 3288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3293 27 NaN 47951 35 0 6852.4 0.327 -1 VPTEENEM 8 26 482.69969807809247 963.384843222985 2 482.6998596191406 MULTI HCD FTMS 0 0 0 3292 19230.701171875 0.553309482382594 9 -0.13281822204589844 1 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 10.073929032068715 0.5196730168178844 2 NE{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.6792 0 0 555.2543202130875 0 555.2543202130875 0 32.346368802282015 0 0 0 0.9247425010840047 0 0 0 NE{M(Oxidation (M))|F} 3.6792 + + 9 NaN NaN 93079.7 NaN 1600 1691 3292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3294 27.004 NaN 58465 35 0 7748.3 0.261 -1 LPMALETIC 9 35 524.2643742064505 NaN 0 524.2825927734375 PEAK HCD FTMS 0 0 0 3292 6729.875 0.6194117693585952 2 -0.0277862548828125 2 Carbamidomethyl (C) _LPMALETIC(Carbamidomethyl (C))_ ENST00000486167.1_1_2:113875574-113887330:+|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 6.9897 0 0 0.6679 0 0 178.0419797588009 752.3714083307249 930.4133880895258 0 0 0 0 0 0 0 0 0 {I|L} 0.6679 + + 1 + NaN NaN 107196.8 NaN 1601 1691 3292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3295 27.008 NaN 31550 35 0 5900.5 0.261 -1 0 24 469.32873586443475 468.32145939783476 1 469.3285217285156 MULTI HCD FTMS 0 0 0 3292 11234.1484375 0.4831818333407397 -23 0.3418445587158203 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103189.2 NaN 1602 1691 3292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3296 27.011 NaN 22958 35 0 5793 0.261 -1 CLLIILPCF 9 21 574.8140308394393 1147.6135087456785 2 574.8143920898438 MULTI HCD FTMS 0 0 0 3292 13050.5615234375 0.8226996403798912 4 -0.04576301574707031 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLIILPC(Carbamidomethyl (C))F_ ENSG00000131015|ENST00000367351|ULBP2;ENSG00000155918|ENST00000367341|RAET1L 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104102.4 NaN 1603 1691 3292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3297 27.014 NaN 16974 35 0 4112.5 0.261 + 3739 ENATGDLATSR 11 13 567.7731025101617 1133.5316520871233 2 567.7724609375 MULTI HCD FTMS 0 0 0 3292 6409.908203125 0.6090448139413934 -4 0.06410980224609375 5 Unmodified _ENATGDLATSR_ ENSG00000167642|ENST00000301244|SPINT2;ENST00000590210.1_1_19:38755508-38778604:+|nuORF;nc|ENSG00000167642|O43291-2|SPINT2 2.0860074813731053 0.4097721463192591 2 A 1 10 5.4846 0 0 0.48385 0 0 700.303729579114 359.1666658990844 1059.4703954781985 0 0 0 0 0 0 0 0 0 + A 0.48385 + + 2 + NaN NaN 88528.9 NaN 1604 1691 3292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3299 27.02 NaN 26937 35 0 5733.3 0.327 + 32528 WHFFFCPK 8 15 556.2628408856497 NaN 0 555.925048828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _WHFFFCPK_ REV__ENSG00000007933|ENST00000367755|FMO3 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95640.1 NaN 1605 1692 3298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3301 27.027 NaN 25889 35 0 4403.6 0.327 -1 LTCLFSCW 8 22 543.7421023240867 NaN 0 543.7425537109375 PEAK HCD FTMS 0 0 0 3300 5967.2421875 0.6477488643509447 -8 0.12894058227539062 1 2 Carbamidomethyl (C) _LTC(Carbamidomethyl (C))LFSC(Carbamidomethyl (C))W_ ENST00000496411.5_1_1:249151692-249152085:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97644.7 NaN 1606 1693 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3302 27.032 NaN 40523 35 0 10594 0.261 + 24329 RYIAQVKHL 9 18 564.3378999437415 1126.661246954283 2 564.3372802734375 MULTI HCD FTMS 0 0 0 3300 7942.8740234375 0.6966682592627679 -4 0.061443328857421875 2 Unmodified _RYIAQVKHL_ ENST00000267068.5_2_13:33110791-33110824:-|nuORF 4.3292370932331545 0.3181982124262546 2 K[H{I|L}] 3 6 15.458 0 0 1.372 0 0 730.4174671857437 0 730.4174671857437 0 15.45757490560675 0 0 0 0.5 0 0 0 + K[H{I|L}] 1.372 + + 2 NaN NaN 85344.4 NaN 1607 1693 3300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3304 27.037 NaN 29756 35 0 9762.3 0.411 + -1 KSPWYMLFC 9 23 616.2859933351256 1230.557433737051 2 616.2860717773438 MULTI HCD FTMS 0 0 0 3303 7923.99951171875 0.43822782104273283 -5 0.07135391235351562 1 Carbamidomethyl (C) _KSPWYMLFC(Carbamidomethyl (C))_ REV__ENST00000471527.1_1_7:43298212-43298281:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114984.5 NaN 1608 1694 3303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3306 27.045 NaN 68558 35 0 6163.3 0.327 + 9553 HRDYETATL 9 36 553.2671728507465 1104.519792768293 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3305 30206.56640625 0.005915395800090944 201 -3.085956573486328 1 Unmodified _HRDYETATL_ ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 2.9952420565917617 0.3283108881486655 2 A[{I|L}T] 3 6 8.9524 0 0 0.81053 0 0 801.337205955275 0 801.337205955275 0 1.962724883926656 0 0 0 0 0 0 0 + A[{I|L}T] 0.81053 + + 16 NaN NaN 101405.7 NaN 1609 1695 3305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3307 27.05 NaN 30036 35 0 5490.7 0.261 + 23749 RRETYKVT 8 20 526.7958641841399 1051.5771754350797 2 526.7969360351562 MULTI HCD FTMS 0 0 0 3305 5125.6826171875 0.7419615923445642 1 -0.016569137573242188 2 Unmodified _RRETYKVT_ REV__ENSG00000113719|ENST00000393784|ERGIC1;REV__nc|ENSG00000113719|Q969X5-2|ERGIC1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98423.4 NaN 1610 1695 3305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3308 27.053 NaN 34111 35 0 6203.7 0.261 + -1 PLAMVMLHL 9 20 528.7825759175255 1055.550598901851 2 529.284912109375 MULTI HCD FTMS 0 0 0 3305 5789.77490234375 0.7511766733100288 8 -0.12187576293945312 3 2 Oxidation (M) _PLAM(Oxidation (M))VM(Oxidation (M))LHL_ REV__ENSG00000088756|ENST00000383472|ARHGAP28;REV__nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;REV__nc|ENSG00000088756|Q9P2N2-5|ARHGAP28 2.302733041254933 0.33356062215410776 2 H{I|L} 2 -1 20.969 0 0 1.9866 0 0 787.3937245099625 0 787.3937245099625 0 20.969100130080562 0 0 0 0 0 0 0 H{I|L} 1.9866 + + 1 NaN NaN 89824.9 NaN 1611 1695 3305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3309 27.057 NaN 16839 35 0 2540 0.261 -1 TRCPMIPCY 9 16 570.7534760038859 1139.4923990745717 2 570.7532958984375 MULTI HCD FTMS 0 0 0 3305 3906.82666015625 0.5005873838691383 -2 0.017976760864257812 4 Carbamidomethyl (C) _TRCPMIPC(Carbamidomethyl (C))Y_ ENSG00000035862|ENST00000262768|TIMP2 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83167.8 NaN 1612 1695 3305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3311 27.062 NaN 35857 35 0 6304.1 0.327 -1 0 27 459.1718389991121 458.1645625325121 1 459.1719970703125 MULTI HCD FTMS 0 0 0 3310 12776.9287109375 0.30253449546363875 -23 0.3271903991699219 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97784.7 NaN 1613 1696 3310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3312 27.067 NaN 69344 35 0 9489.3 0.261 + 21455 PWSFPGWL 8 37 495.2483527844293 988.4821526356586 2 495.248046875 MULTI HCD FTMS 0 0 0 3310 6344 0.19789062270581123 8 -0.11554527282714844 2 Unmodified _PWSFPGWL_ ENSG00000054983|ENST00000261304|GALC;GALC|p.W629Mfs*9|1|0.24|ENSG00000054983|chr14:87939931-87939932|-/T|frameshift_variant;nc|ENSG00000054983|P54803-3|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-5|GALC 2.577480529830294 0.5381683276125971 2 EK 2 8 9.464 0 0 0.95742 0 0 300.09630166085236 428.2267436740231 728.3230453348755 0 0 0 0 0 0 0 0 0 EK 0.95742 - 5 + NaN NaN 117021.5 NaN 1614 1696 3310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3314 27.072 NaN 94101 35 0 10460 0.327 + 12817 KYEGVCGLYKG 11 37 406.205021336625 1215.5932346100751 3 406.2059631347656 MULTI HCD FTMS 0 0 0 3313 29907.626953125 0.7647117076706461 -2 0.026760101318359375 1 Unmodified _KYEGVCGLYKG_ SLC25A32|p.R180C|1|0.1|ENSG00000164933|chr8:103403178-103403178|G/A|missense_variant 2.498486711656943 0.4079631525365919 2 {I|L} 1 10 5.4846 0 0 0.45118 0 0 61.053486037687954 1038.4316020293695 1099.4850880670574 0 0 0 0 0 0 0 0 0 + {I|L} 0.45118 + + 1 + NaN NaN 96482.7 NaN 1615 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3315 27.077 NaN 32674 35 0 6624.8 0.261 -1 YTNAKKQM 8 21 500.25020189504477 998.4858508568896 2 500.250244140625 MULTI HCD FTMS 0 0 0 3313 16416.9453125 1 0 0 2 Oxidation (M) _YTNAKKQM(Oxidation (M))_ ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16 7.910154910731844 0.5302565402355366 2 V{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.9821 0 0 734.3716297834 0 734.3716297834 0 29.776296993281406 0 0 0 0.8807196863200843 0 0 0 V{M(Oxidation (M))|F} 2.9821 - 5 NaN NaN 92949.9 NaN 1616 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3316 27.08 NaN 36270 35 0 4286.3 0.261 -1 SCQADLASSL 10 22 526.2398552872739 1050.4651576413478 2 526.2398071289062 MULTI HCD FTMS 0 0 0 3313 15323.541015625 0.544604195595272 -8 0.10618019104003906 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))QADLASSL_ ENSG00000051341|ENST00000264233|POLQ;POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 4.897010918128616 0.4493830473644964 2 S{I|L} 2 -1 25.217 0 0 2.4005 0 0 832.3335438459 0 832.3335438459 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 S{I|L} 2.4005 + + 3 NaN NaN 88075.4 NaN 1617 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3317 27.083 NaN 122630 35 0 14350 0.263 + 29834 VERTQIDELT 10 36 401.8778842771242 NaN 0 401.8778381347656 PEAK HCD FTMS 0 0 0 3313 14335.2890625 0.14271252392098424 919 -20.208349227905273 4 Unmodified _VERTQIDELT_ REV__ENSG00000163629|ENST00000411767|PTPN13;REV__nc|ENSG00000163629|Q12923-2|PTPN13;REV__nc|ENSG00000163629|Q12923-3|PTPN13;REV__nc|ENSG00000163629|Q12923-4|PTPN13 1.4819007175156935 0.33891598740166873 2 S 1 -1 1.7827 0 0 0.22236 0 0 325.5239437478047 386.1718844049438 711.6958281527485 0 0 0 0 0 0 0 0 0 S 0.22236 - 1 + NaN NaN 103208.4 NaN 1618 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3318 27.087 NaN 25538 35 0 6894.3 0.261 -1 KKTKWMNMK 9 14 605.8250644881211 1209.6355760430422 2 605.8248901367188 MULTI HCD FTMS 0 0 0 3313 11195.24609375 0.8388225536605595 -5 0.05243110656738281 5 Oxidation (M) _KKTKWMNM(Oxidation (M))K_ ENSG00000163812|ENST00000424952|ZDHHC3;ENST00000479314.1_1_3:44968183-44974766:-|nuORF;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3 0.5247636613948944 0.34703895399870666 2 N 1 -1 3.9794 0 0 0.32898 0 0 916.4909054881579 176.08013330631096 1092.571038794469 0 0 0 0 0 0 0 0 0 N 0.32898 + + 2 + NaN NaN 100490.4 NaN 1619 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3319 27.09 NaN 21358 35 0 5612.2 0.261 + 16355 LRWWFFVF 8 12 600.8212651657218 1199.6279773982435 2 600.8214721679688 MULTI HCD FTMS 0 0 0 3313 6615.8642578125 0.6294913424840928 -2 0.026760101318359375 6 Unmodified _LRWWFFVF_ REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|39|3|sense 0.6903765706972694 0.5409681170271811 2 S 1 -1 5.4846 0 0 0.45719 0 0 530.7944945874998 578.7646578424436 1109.5591524299434 0 0 0 0 0 0 0 0 0 S 0.45719 - 1 + NaN NaN 94045.2 NaN 1620 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3320 27.093 NaN 42006 35 0 9409 0.262 + 29308 TYNIEQRT 8 23 512.756691511959 1023.4988300907181 2 512.7568969726562 MULTI HCD FTMS 0 0 0 3313 4238.869140625 0.25290789171776273 -4 0.04473686218261719 7 Unmodified _TYNIEQRT_ REV__ENSG00000150672|ENST00000376104|DLG2;REV__nc|ENSG00000150672|Q15700-3|DLG2;REV__nc|ENSG00000150672|Q15700-4|DLG2;REV__nc|ENSG00000150672|Q15700-5|DLG2;REV__nc|ENSG00000150672|Q15700|DLG2 8.155526934196011 0.529892495641912 2 {I|L}N[{M(Oxidation (M))|F}V] 4 -1 25.445 0 0 2.4861 0 0 532.2599907914923 0 532.2599907914923 0 25.445312593723983 0 0 0 0.9247425010840047 0 0 0 {I|L}N[{M(Oxidation (M))|F}V] 2.4861 - 5 NaN NaN 96686.4 NaN 1621 1697 3313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3322 27.099 NaN 112850 35 0 13123 0.327 + 17592 LYWGIAEDHL 10 41 406.205021336625 1215.5932346100751 3 406.2043762207031 MULTI HCD FTMS 0 0 0 3321 37139.70703125 0.9496296322930796 -1 0.026685714721679688 1 Unmodified _LYWGIAEDHL_ ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1 3.944395688203298 0.4544253912184634 2 {I|L} 1 9 14.604 0 0 1.2014 0 0 1084.4988417651516 0 1084.4988417651516 0 14.604093769761874 0 0 0 0 0 0 0 + {I|L} 1.2014 + + 1 + NaN NaN 107784.9 NaN 1622 1698 3321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3323 27.103 NaN 23007 35 0 4822.7 0.261 + 14560 LFHVEQRQ 8 19 528.7825759175255 1055.550598901851 2 528.7813110351562 MULTI HCD FTMS 0 0 0 3321 6266.59130859375 0.39281210218297863 8 -0.09749984741210938 2 Unmodified _LFHVEQRQ_ ENSG00000115355|ENST00000436346|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-5|CCDC88A 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86315.9 NaN 1623 1698 3321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3324 27.107 NaN 33522 35 0 9429.7 0.261 -1 CFLRFCQN 8 16 544.2437265366145 NaN 0 544.244140625 PEAK HCD FTMS 0 0 0 3321 1754.046630859375 0.28393709399731354 1 -0.013475418090820312 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))FLRFCQN_ ENST00000455854.2_1_6:43493558-43493747:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83344.1 NaN 1624 1698 3321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3326 27.112 NaN 1203000 35 0 131430 0.327 + 13004 KYIQRQETI 9 103 589.8300711224944 1177.6455893117886 2 589.8302612304688 MULTI HCD FTMS 0 0 0 3325 1052752.375 1 0 0 1 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 193.2943466776899 1.661812519250559E-13 2 KY{I|L}QSRQ 7 4 69.593 0 0 5.9095 0 0 0 271.1084078424438 271.1084078424438 8.23091675707807 0 0 0 0 0.8494850021680094 0 1.2658715643802765 1.591129063296272 KY{I|L}QSRQ 5.9095 - 6378 + NaN NaN 274257.7 NaN 1625 1699 3325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3327 27.117 NaN 83222 35 0 8439.4 0.262 + 27707 TANQHSDVI 9 38 492.7407905183475 983.4670281034951 2 492.74072265625 MULTI HCD FTMS 0 0 0 3325 54247.1328125 0.05118002883922984 23 -0.3079090118408203 2 Unmodified _TANQHSDVI_ ENSG00000128513|ENST00000357628|POT1;nc|ENSG00000128513|Q9NUX5-2|POT1 18.1463463914782 0.20357593197100715 2 [TA]N 3 6 33.244 0 0 3.3803 0 0 0 694.3159273736936 694.3159273736936 27.759621790487685 0 0 0 0 0.5 1.6989700043360187 0 0.3807196863200844 + [TA]N 3.3803 + + 12 + NaN NaN 97788.2 NaN 1626 1699 3325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3328 27.12 NaN 73193 35 0 8775.1 0.261 + 16268 LQHQVPPQ 8 32 473.75897953029255 945.5034061273851 2 473.7586364746094 MULTI HCD FTMS 0 0 0 3325 41346.0859375 0.9317421255337144 -1 0.013475418090820312 3 Unmodified _LQHQVPPQ_ ENSG00000157212|ENST00000404141|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant 4.75600775471527 0.5349361699807423 2 KY{I|L}D 4 8 25.433 0 0 2.6899 0 0 0 423.2057283990844 423.2057283990844 17.985775332874283 0 0 0 0 0 0 0 0 KY{I|L}D 2.6899 - 25 + NaN NaN 95500.1 NaN 1627 1699 3325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3329 27.124 NaN 123700 35 0 28611 0.261 -1 KPMMKEFRF 9 31 415.87540213024783 1244.6043769909436 3 415.8753967285156 MULTI HCD FTMS 0 0 0 3325 28630.525390625 0.7391537415361145 -2 0.0401611328125 4 2 Oxidation (M) _KPM(Oxidation (M))M(Oxidation (M))KEFRF_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P937S|1|0.52|ENSG00000103512|chr16:14880066-14880066|C/T|missense_variant 1.9063754702782614 0.3365653076853981 2 K 1 -1 10.485 0 0 0.8424 0 0 64.00101896255644 1049.487681346214 1113.4887003087704 0 0 0 0 0 0 0 0 0.5 K 0.8424 + + 3 + NaN NaN 115682.7 NaN 1628 1699 3325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3330 27.127 NaN 37758 35 0 11439 0.261 + 19645 NVGDKKGKI 9 17 479.78782623617417 957.5610995391484 2 479.7876281738281 MULTI HCD FTMS 0 0 0 3325 8112.8232421875 0.4614005641756776 7 -0.08402442932128906 5 Unmodified _NVGDKKGKI_ ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94462 NaN 1629 1699 3325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3332 27.133 NaN 257380 35 0 27342 0.327 + 7922 GARLQELFN 9 63 524.2827649925069 1046.5509770518138 2 524.2825927734375 MULTI HCD FTMS 0 0 0 3331 135451.84375 0.8210336237711608 1 -0.013458251953125 1 Unmodified _GARLQELFN_ REV__ENSG00000129534|ENST00000310806|MIS18BP1 22.736283301280096 0.1639198954644489 2 KYTEQR 6 -1 34.403 0 0 3.2873 0 0 0 238.1188906305297 238.1188906305297 9.938871815334949 0 0 0 0 1.1549471895720984 0 0 0 KYTEQR 3.2873 - 199 + NaN NaN 124394.2 NaN 1630 1700 3331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3333 27.137 NaN 42591 35 0 5494.7 0.261 -1 VPTEENEM 8 33 482.69969807809247 963.384843222985 2 482.6997985839844 MULTI HCD FTMS 0 0 0 3331 16536.111328125 0.47578021819438965 18 -0.2557563781738281 2 Oxidation (M) _VPTEENEM(Oxidation (M))_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 12.531546534597751 0.5015908124873912 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2825 0 0 798.3391716915381 0 798.3391716915381 0 5.479465618955501 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2825 + + 4 + NaN NaN 88791.3 NaN 1631 1700 3331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3334 27.14 NaN 36914 35 0 11201 0.261 -1 QPDEEPMDM 9 21 562.1996131050678 1122.3846732769355 2 562.2000732421875 MULTI HCD FTMS 0 0 0 3331 7481.77197265625 0.5469816832321129 16 -0.22301673889160156 3 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90964.4 NaN 1632 1700 3331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3336 27.146 NaN 37213 35 0 4081.6 0.327 + 9179 HPLEDRNTI 9 26 547.7831165120648 1093.5516800909295 2 547.7833251953125 MULTI HCD FTMS 0 0 0 3335 7489.8271484375 0.2541895499413841 -8 0.11849021911621094 1 Unmodified _HPLEDRNTI_ ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 5.731851221503515 0.3075653528928475 2 HP{I|L} 3 6 30.445 0 0 2.7841 0 0 0 743.3335054986936 743.3335054986936 30.445312593723983 0 0 0 0 0.4247425010840047 0 0 0 + HP{I|L} 2.7841 + + 4 + NaN NaN 91800.3 NaN 1633 1701 3335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3337 27.15 NaN 24944 35 0 5473.6 0.261 + 32835 WVFGKLDQR 9 24 574.8140308394393 1147.6135087456785 2 574.8139038085938 MULTI HCD FTMS 0 0 0 3335 11149.2431640625 0.7028416612656343 14 -0.19301795959472656 2 Unmodified _WVFGKLDQR_ REV__ENSG00000197818|ENST00000361573|SLC9A8;REV__nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99352.2 NaN 1634 1701 3335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3338 27.154 NaN 32433 35 0 10312 0.261 + 24882 RYQKGLLHI 9 21 564.3378999437415 1126.661246954283 2 564.337158203125 MULTI HCD FTMS 0 0 0 3335 1751.5601806640625 0.15362907411807492 4 -0.0418548583984375 3 Unmodified _RYQKGLLHI_ REV__ENSG00000081148|ENST00000193391|IMPG2 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85840.4 NaN 1635 1701 3335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3341 27.167 NaN 60459 35 0 4859 0.326 -1 SPEEKQEML 9 30 553.7553535910436 1105.496154248887 2 553.7553100585938 MULTI HCD FTMS 0 0 0 3340 29390.947265625 0.10171338536718941 67 -0.9251022338867188 1 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 7.101721422024254 0.29718071671418667 2 {M(Oxidation (M))|F}{I|L} 2 -1 14.693 0 0 1.3291 0 0 827.357713767775 0 827.357713767775 0 7.703037561203843 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.3291 + + 11 NaN NaN 101726 NaN 1636 1703 3340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3342 27.172 NaN 34421 35 0 12271 0.261 -1 MERVSRVCH 9 15 616.2859933351256 1230.557433737051 2 616.2853393554688 MULTI HCD FTMS 0 0 0 3340 8774.416015625 0.48525914290670646 4 -0.03946876525878906 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))ERVSRVC(Carbamidomethyl (C))H_ ENST00000295924.11_2_3:156411958-156413673:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91826.6 NaN 1637 1703 3340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3344 27.178 NaN 121340 35 0 18392 0.327 + 3915 EPSALPTVSN 10 41 507.75835090279026 1013.5021488723805 2 508.24627685546875 MULTI HCD FTMS 0 0 0 3343 1785.7431640625 0.0224911850739889 -16 0.2251415252685547 1 Unmodified _EPSALPTVSN_ REV__ENSG00000170525|ENST00000379775|PFKFB3;REV__ENST00000461744.5_1_10:6267193-6270182:+|nuORF;REV__ENST00000467491.5_1_10:6267193-6273265:+|nuORF;REV__ENST00000477914.5_1_10:6267193-6274902:+|nuORF;REV__ENST00000487989.1_1_10:6264793-6268376:+|nuORF;REV__ENST00000490474.5_1_10:6267193-6274861:+|nuORF;REV__nc|ENSG00000170525|Q16875-2|PFKFB3;REV__nc|ENSG00000170525|Q16875-3|PFKFB3;REV__nc|ENSG00000170525|Q16875-4|PFKFB3 2.9952420565917617 0.4594494122822477 2 PAD 3 -1 16.198 0 0 1.5982 0 0 136.08633126280296 591.2785128229124 727.3648440857153 0 0 0 0 0 0 0 0 0 PAD 1.5982 - 27 + NaN NaN 98872.9 NaN 1638 1704 3343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3345 27.182 NaN 40308 35 0 7677.9 0.261 -1 0 25 469.32873586443475 468.32145939783476 1 469.32830810546875 MULTI HCD FTMS 0 0 0 3343 9143.75390625 0.39327375818630445 -10 0.1401805877685547 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88511.9 NaN 1639 1704 3343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3347 27.188 NaN 27701 35 0 3089.7 0.411 -1 TAVKNDYEM 9 33 543.7421023240867 NaN 0 543.7420043945312 PEAK HCD FTMS 0 0 0 3346 7923.7314453125 0.8601273224463108 4 -0.0465545654296875 1 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ ENSG00000132383|ENST00000254719|RPA1 5.296884461304476 0.2695788793730278 2 V 1 -1 8.9794 0 0 0.82724 0 0 172.08087105266696 811.2953585260374 983.3762295787044 0 0 0 0 0 0.5 0 0 0 V 0.82724 + + 1 + NaN NaN 88336.7 NaN 1640 1705 3346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3349 27.196 NaN 58001 35 0 5313.4 0.326 -1 DEEVLQNML 9 28 553.7553535910436 1105.496154248887 2 553.755126953125 MULTI HCD FTMS 0 0 0 3348 19124.65625 0.0661847851854159 70 -1.015951156616211 1 Oxidation (M) _DEEVLQNM(Oxidation (M))L_ ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B 3.2813086475875832 0.32614229037259 2 {M(Oxidation (M))|F}{I|L} 2 -1 16.454 0 0 1.4883 0 0 827.364061424025 0 827.364061424025 0 9.463950151760656 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.4883 + + 4 NaN NaN 87625.5 NaN 1641 1706 3348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3350 27.201 NaN 62513 35 0 7168.8 0.261 + 29109 TYGLGDRKD 9 33 512.756691511959 1023.4988300907181 2 513.241455078125 MULTI HCD FTMS 0 0 0 3348 9591.53125 0.8407095470083239 5 -0.060817718505859375 2 Unmodified _TYGLGDRKD_ ENSG00000186868|ENST00000262410|MAPT;ENST00000570299.5_1_17:44039703-44096001:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636-9|MAPT;nc|ENSG00000186868|P10636|MAPT 8.745405648335112 0.2847203663274469 2 [YT]H 3 7 24.437 0 0 2.3876 0 0 0 619.2878512018186 619.2878512018186 9.731975075880326 0 0 0 0 0 1.3979400086720375 0 0 [YT]H 2.3876 - 8 + NaN NaN 90049.7 NaN 1642 1706 3348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3352 27.207 NaN 16361 35 0 4937.9 0.327 + 5602 FLRSKKSSEE 10 7 605.8250644881211 1209.6355760430422 2 606.3277587890625 MULTI HCD FTMS 0 0 0 3351 4468.44677734375 0.40207560131780085 9 -0.1487274169921875 1 Unmodified _FLRSKKSSEE_ ENSG00000249437|ENST00000517649|NAIP;nc|ENSG00000249437|Q13075-2|NAIP 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92113.1 NaN 1643 1707 3351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3353 27.211 NaN 33010 35 0 4765.3 0.261 + 14853 LKFYFHEAL 9 22 584.3135018650256 1166.6124507968511 2 584.3134765625 MULTI HCD FTMS 0 0 0 3351 4221.45458984375 0.3273334771567281 -7 0.07428932189941406 2 Unmodified _LKFYFHEAL_ ENSG00000132604|ENST00000254942|TERF2;nc|ENSG00000132604|Q15554-4|TERF2 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87578.5 NaN 1644 1707 3351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3355 27.217 NaN 57361 35 0 7835.5 0.326 -1 SQALSGCEIS 10 21 526.2398552872739 1050.4651576413478 2 526.2396850585938 MULTI HCD FTMS 0 0 0 3354 16615.0703125 0.5905056144053973 3 -0.039920806884765625 1 Carbamidomethyl (C) _SQALSGC(Carbamidomethyl (C))EIS_ ENSG00000118705|ENST00000237530|RPN2 5.731851221503515 0.44496410492002586 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89761 NaN 1645 1708 3354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3356 27.222 NaN 21774 35 0 5316.7 0.262 -1 0 13 459.1718389991121 458.1645625325121 1 459.1718444824219 MULTI HCD FTMS 0 0 0 3354 16720.0859375 0.39590130599070134 -11 0.1450824737548828 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96020.5 NaN 1646 1708 3354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3357 27.226 NaN 19681 35 0 4406.3 0.261 -1 TEEEEEEE 8 15 533.1908932696548 NaN 0 533.19091796875 PEAK HCD FTMS 0 0 0 3354 11357.56640625 0.5195290866026545 944 -20.995651245117188 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TEEEEEEE_ ABCF1|p.S140T|1|0.78|ENSG00000204574|chr6:30578507-30578507|G/C|missense_variant;ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant;ENSG00000054523|ENST00000676179|KIF1B;ENSG00000100813|ENST00000605057|ACIN1;ENSG00000105393|ENST00000598188|BABAM1;ENSG00000120645|ENST00000538872|IQSEC3;ENSG00000130175|ENST00000677123|PRKCSH;ENSG00000147166|ENST00000373829|ITGB1BP2;ENSG00000147394|ENST00000695776|ZNF185;ENSG00000167670|ENST00000301280|CHAF1A;ENSG00000174446|ENST00000316634|SNAPC5;ENSG00000183304|ENST00000381003|FAM9A;ENSG00000197520|ENST00000445590|FAM177B;ENSG00000224089|ENST00000430448|CT47A10;ENSG00000225830|ENST00000355832|ERCC6;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236446|ENST00000371311|CT47B1;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000242362|ENST00000458218|CT47A2;ENST00000448635.2_1_19:17378325-17387315:+|nuORF;ENST00000568875.1_1_15:66786776-66787321:-|nuORF;ENST00000585325.5_1_19:11557144-11558756:+|nuORF;ENST00000585540.1_1_19:11558256-11559107:+|nuORF;ENST00000592445.1_1_19:11558256-11558487:+|nuORF;ENST00000592937.1_1_19:2477660-2478092:+|nuORF;ENST00000595393.5_1_19:17378325-17387472:+|nuORF;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000120645|Q9UPP2-2|IQSEC3;nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000174446|O75971-2|SNAPC5;nc|ENSG00000182606|Q9UPV9-2|TRAK1;nc|ENSG00000197520|A6PVY3-2|FAM177B;nc|ENSG00000225830|P0DP91|ERCC6;nc|ENSG00000269307|Q9NWV8-3|BABAM1;REV__ENSG00000008128|ENST00000404249|CDK11A;REV__ENSG00000029559|ENST00000226284|IBSP;REV__ENSG00000100353|ENST00000216190|EIF3D;REV__ENSG00000119041|ENST00000263956|GTF3C3;REV__ENSG00000120645|ENST00000538872|IQSEC3;REV__ENSG00000131116|ENST00000300811|ZNF428;REV__ENSG00000133706|ENST00000394434|LARS1;REV__ENSG00000174348|ENST00000312553|PODN;REV__ENSG00000181378|ENST00000341552|CFAP65;REV__ENSG00000198835|ENST00000366714|GJC2;REV__ENSG00000198838|ENST00000634891|RYR3;REV__ENSG00000198853|ENST00000361226|RUSC2;REV__ENSG00000248333|ENST00000341832|CDK11B;REV__ENST00000462641.1_1_22:36907036-36908721:-|nuORF;REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF;REV__nc|ENSG00000008128|Q9UQ88-3|CDK11A;REV__nc|ENSG00000008128|Q9UQ88-4|CDK11A;REV__nc|ENSG00000008128|Q9UQ88-9|CDK11A;REV__nc|ENSG00000008128|Q9UQ88|CDK11A;REV__nc|ENSG00000100353|O15371-2|EIF3D;REV__nc|ENSG00000100353|O15371-3|EIF3D;REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3;REV__nc|ENSG00000124313|Q5JU85-4|IQSEC2;REV__nc|ENSG00000133706|Q9P2J5-2|LARS1;REV__nc|ENSG00000174348|Q7Z5L7-2|PODN;REV__nc|ENSG00000174348|Q7Z5L7-3|PODN;REV__nc|ENSG00000174348|Q7Z5L7-4|PODN;REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198838|Q15413-3|RYR3;REV__nc|ENSG00000248333|P21127-10|CDK11B;REV__nc|ENSG00000248333|P21127-3|CDK11B;REV__nc|ENSG00000248333|P21127-5|CDK11B;REV__nc|ENSG00000248333|P21127-6|CDK11B;REV__nc|ENSG00000248333|P21127-8|CDK11B;REV__nc|ENSG00000248333|P21127-9|CDK11B;REV__nc|ENSG00000248333|P21127|CDK11B 0 0.38822285293237185 2 Q 1 -1 3.4949 0 0 0.32835 0 0 770.271848939897 163.01699243717033 933.2888413770673 0 0 0 0 0 0 0 0 0 Q 0.32835 - 1 + NaN NaN 83929 NaN 1647 1708 3354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3358 27.229 NaN 52562 35 0 7352.9 0.261 + 18076 MMLHKPIT 8 32 485.76416282249994 969.5137727117999 2 485.7625732421875 MULTI HCD FTMS 0 0 0 3354 9155.6044921875 0.0058521078811279185 -12 0.1552734375 4 Unmodified _MMLHKPIT_ ENSG00000069869|ENST00000435532|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934|NEDD4 18.13498045792455 0.4603629008820478 2 [PS]EAQ[KP][{I|L}T] 9 5 [PS]EA + + 24.22 11.823 3.0774 2.4982 2.4982 59.901 0 0 0 0 12.397868585481078 0 0 0 1 0 0.7742275032520141 0 [PS]EAQ[KP][{I|L}T] 2.4982 - 23 + NaN NaN 103468.7 NaN 1648 1708 3354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3360 27.235 NaN 523020 35 0 49719 0.411 + 2550 DTAAQITQR 9 75 502.26203023949734 1002.5095075457947 2 502.2620544433594 MULTI HCD FTMS 0 0 0 3359 232667.796875 0.009565928644124186 -12 0.16216278076171875 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 197.8061459832624 2.0030479297116643E-17 2 {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR 9 0 + 101.03 0 0 10.077 10.077 94.208 0 0 0 7.841306105499754 59.77880587315555 7.841306105499754 9.208187539523749 0 3.3494850021680094 0 2.829689690656103 0.6203715150305281 + + {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}[RN]{I|L}TQ[VG];{[ES]|[DT]|[{I|L}C]}[RN]{I|L}T[AG][VG];{[RE]|[WV]}[NS]{I|L}TQ[VG];{[ES]|[DT]|[{I|L}C]}[RN]{I|L}VA{[QS]|[NT]};{[RE]|[WV]}[NS]{I|L}T[AG][VG];{[ES]|[DT]|[{I|L}C]}AA[R{I|L}]AA{[QS]|[NT]} 10.077;9.1588;8.54;7.6258;5.8373;4.9188;4.3183;3.9925;3.3997;3.2828 +;-;-;-;-;-;-;-;-;- + 797 NaN NaN 235465.9 NaN 1649 1709 3359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3362 27.244 NaN 278730 35 0 33967 0.327 + 13005 KYIQRQETI 9 61 589.8300711224944 1177.6455893117886 2 589.8302001953125 MULTI HCD FTMS 0 0 0 3361 251273.9375 0.23868285027616298 11 -0.16748809814453125 1 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 106.94017166704063 0.003441928997083001 2 KY{I|L}QRC{I|L} 7 3 46.899 0 0 3.9824 0 0 0 270.1246431940063 270.1246431940063 6.421138293738977 0 0 0 0 1.1677353201839438 0 0 0.3494850021680094 KY{I|L}QRC{I|L} 3.9824 - 273 + NaN NaN 125290.9 NaN 1650 1710 3361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3363 27.248 NaN 27568 35 0 5313.5 0.262 + 13936 KYQQNVQS 8 18 497.7520676182106 993.4895823032213 2 497.75048828125 MULTI HCD FTMS 0 0 0 3361 11135.1318359375 0.1428703045931806 -8 0.08381271362304688 2 Unmodified _KYQQNVQS_ ENSG00000163793|ENST00000296097|DNAJC5G 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85667.3 NaN 1651 1710 3361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3364 27.252 NaN 38820 35 0 10852 0.261 -1 LHITYERGT 9 25 566.2913829424192 1130.5682129516383 2 566.2911987304688 MULTI HCD FTMS 0 0 0 3361 11242.345703125 1 0 0 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LHITYERGT_ ENST00000371602.8_1_20:49509224-49509335:-|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88787.6 NaN 1652 1710 3361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3366 27.258 NaN 77058 35 0 9045.3 0.327 + -1 VMFLVYIF 8 31 524.2827649925069 1046.5509770518138 2 524.2824096679688 MULTI HCD FTMS 0 0 0 3365 34367.3125 0.2083155041671473 12 -0.17280197143554688 1 Oxidation (M) _VM(Oxidation (M))FLVYIF_ REV__ENSG00000145860|ENST00000424310|RNF145;REV__ENST00000518062.1_1_5:158588183-158590023:-|nuORF;REV__nc|ENSG00000145860|Q96MT1-2|RNF145;REV__nc|ENSG00000145860|Q96MT1-3|RNF145;REV__nc|ENSG00000145860|Q96MT1-4|RNF145;REV__nc|ENSG00000145860|Q96MT1-5|RNF145 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 88626.8 NaN 1653 1711 3365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3367 27.262 NaN 27382 35 0 3454.5 0.261 -1 VYCACGKM 8 15 494.705845674226 987.397138415252 2 494.7060241699219 MULTI HCD FTMS 0 0 0 3365 6751.76025390625 0.4378229345094055 9 -0.1458873748779297 2 2 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))AC(Carbamidomethyl (C))GKM_ ENST00000307236.8_2_2:11606247-11606286:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96167.7 NaN 1654 1711 3365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3368 27.266 NaN 44391 35 0 11009 0.261 + 1897 CYTPAPEE 8 28 455.18623429913026 908.3579156650605 2 455.1886901855469 MULTI HCD FTMS 0 0 0 3365 6979.06494140625 0.5270851080306668 21 -0.24924278259277344 3 Unmodified _CYTPAPEE_ REV__ENSG00000150990|ENST00000308736|DHX37;REV__ENST00000542400.5_1_12:125432350-125435235:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89060.3 NaN 1655 1711 3365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3370 27.272 NaN 56271 35 0 4651 0.327 + 27708 TAQDRPPAE 9 42 492.7407905183475 983.4670281034951 2 492.7406921386719 MULTI HCD FTMS 0 0 0 3369 20669.5390625 0.01950089434161904 36 -0.4685478210449219 1 Unmodified _TAQDRPPAE_ ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2 6.723162845929126 0.3000504726104499 2 [TA][C(Carbamidomethyl (C))K]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[{M(Oxidation (M))|F}V] 8 6 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0.5 1.3979400086720375 0 0 [TA][C(Carbamidomethyl (C))K]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[{M(Oxidation (M))|F}V] 0 - 16 NaN NaN 91928.7 NaN 1656 1712 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3371 27.276 NaN 47396 35 0 5384.9 0.261 + 28545 TPQRCLPCL 9 26 515.7618615567596 1029.5091701803192 2 515.7616577148438 MULTI HCD FTMS 0 0 0 3369 19167.6796875 0.09270003862969178 -7 0.08360862731933594 2 Unmodified _TPQRCLPCL_ REV__ENSG00000165188|ENST00000489339|RNF183 6.723162845929126 0.3000504726104499 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92778.5 NaN 1657 1712 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3372 27.281 NaN 42916 35 0 6133.1 0.261 + 9517 HQKHCLLCL 9 24 547.7831165120648 1093.5516800909295 2 547.7831420898438 MULTI HCD FTMS 0 0 0 3369 18875.123046875 0.6405834123120336 3 -0.06755447387695312 3 Unmodified _HQKHCLLCL_ REV__ENST00000394053.6_1_2:74441372-74441471:+|nuORF 3.944395688203298 0.32111559684428237 2 HP{I|L} 3 -1 26.198 0 0 2.3957 0 0 0 743.3331392877561 743.3331392877561 22.703037561203843 0 0 0 0 0 0 0 0 HP{I|L} 2.3957 - 3 + NaN NaN 91381.4 NaN 1658 1712 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3373 27.284 NaN 30456 35 0 5848.8 0.261 -1 TGQGNQLTM 9 23 483.2214075401417 964.4282621470834 2 483.221435546875 MULTI HCD FTMS 0 0 0 3369 4870.89599609375 0.2602376742614491 7 -0.12464523315429688 4 Oxidation (M) _TGQGNQLTM(Oxidation (M))_ ENST00000301149.7_1_12:50504315-50504414:+|nuORF 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7616 0 0 799.3824838041131 0 799.3824838041131 0 12.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7616 + + 2 + NaN NaN 87167.1 NaN 1659 1712 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3374 27.287 NaN 27420 35 0 5332.5 0.261 -1 EDHGSWMTM 9 15 563.2039842766867 1124.3934156201733 2 563.203857421875 MULTI HCD FTMS 0 0 0 3369 7938.2587890625 0.6324131154984208 -1 0.01421356201171875 5 2 Oxidation (M) _EDHGSWM(Oxidation (M))TM(Oxidation (M))_ ENSG00000139173|ENST00000266534|TMEM117;TMEM117-KIF16B|1|fusion 3.944395688203298 0.32111559684428237 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3096 0 0 858.300584861525 0 858.300584861525 0 25.969100130080562 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.3096 + + 2 NaN NaN 89598.8 NaN 1660 1712 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3375 27.291 NaN 124150 35 0 28156 0.261 -1 FHMLFDCS 8 18 528.7177395872529 1055.4209262413058 2 528.7174072265625 MULTI HCD FTMS 0 0 0 3369 22789.78125 0.05894475525018138 -8 0.09386253356933594 6 Carbamidomethyl (C) _FHMLFDC(Carbamidomethyl (C))S_ ENSG00000145740|ENST00000396591|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;nc|ENSG00000145740|Q8TAD4-2|SLC30A5 2.577480529830294 0.5381683276125971 2 D[C(Carbamidomethyl (C))S] 3 -1 10.458 0 0 0.99084 0 0 675.3161488263687 0 675.3161488263687 0 10.45757490560675 0 0 0 0 0 0 0 D[C(Carbamidomethyl (C))S] 0.99084 + + 2 NaN NaN 106639 NaN 1661 1712 3369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3377 27.296 NaN 304900 35 0 22609 0.327 + 26046 SPEPKDQTL 9 71 507.75835090279026 1013.5021488723805 2 507.7583312988281 MULTI HCD FTMS 0 0 0 3376 128411.484375 0.7606901394214696 -1 0.024774551391601562 1 Unmodified _SPEPKDQTL_ ENSG00000173692|ENST00000308696|PSMD1;nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|4|fusion 61.60191391372663 0.015340508911304802 2 SP{M(Oxidation (M))|F}{I|L}[KQ]S 7 5 54.306 0 0 5.3583 0 0 0 223.0719393365844 223.0719393365844 39.70220600422826 0 0 0 0 1 1.6989700043360187 0.6989700043360187 0.28872548999643577 SP{M(Oxidation (M))|F}{I|L}[KQ]S 5.3583 - 212 + NaN NaN 125397.8 NaN 1662 1713 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3378 27.301 NaN 113640 35 0 18298 0.261 -1 QPMQPTPSM 9 29 524.7257602617792 1047.4369675903583 2 524.7252807617188 MULTI HCD FTMS 0 0 0 3376 40480.25 0.5082713354704093 -7 0.09980583190917969 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 14.838274106304384 0.23215694253501695 2 Y 1 -1 4.8464 0 0 0.46269 0 0 384.1686703264896 497.1813143365844 881.349984663074 0 0 0 0 0 0.3252574989159953 0 0 0 Y 0.46269 - 1 + NaN NaN 104472.5 NaN 1663 1713 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3379 27.304 NaN 176580 35 0 30103 0.261 + 25954 SPDENENEV 9 52 516.70948184297 1031.40441075274 2 516.7092895507812 MULTI HCD FTMS 0 0 0 3376 61506.03515625 0.12070777399539957 -9 0.1186370849609375 3 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 19.361941925380144 0.1930734562688509 2 NENEV 5 4 38.488 0 0 3.7316 0 0 428.15355117011876 0 428.15355117011876 0 29.023722004121453 0 0 0 0.4247425010840047 0 0 0.3807196863200844 + NENEV 3.7316 + + 27 NaN NaN 122240.5 NaN 1664 1713 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3380 27.308 NaN 54546 35 0 6619.2 0.261 -1 RYSEPSMP 8 23 491.7187176290747 981.4228823249495 2 491.718505859375 MULTI HCD FTMS 0 0 0 3376 17288.775390625 0.3813539219619391 -8 0.1083831787109375 4 Oxidation (M) _RYSEPSM(Oxidation (M))P_ ENSG00000164691|ENST00000367066|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;nc|ENSG00000164691|Q8N103-3|TAGAP 4.75600775471527 0.5349361699807423 2 MN 2 -1 19.464 0 0 1.9832 0 0 718.3329334943375 0 718.3329334943375 0 5.511525224473813 0 0 0 0 0 0 0 MN 1.9832 - 11 NaN NaN 96032 NaN 1665 1713 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3381 27.311 NaN 49962 35 0 6147.8 0.261 + -1 DLPPSWCM 8 30 482.7001953125 NaN 0 482.7001953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _DLPPSWCM(Oxidation (M))_ REV__ENSG00000115419|ENST00000320717|GLS;REV__nc|ENSG00000115419|O94925-3|GLS 5.760428011301431 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87335.1 NaN 1666 1713 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3382 27.315 NaN 39795 35 0 10585 0.261 + -1 CPRPVMISR 9 23 566.2913829424192 1130.5682129516383 2 566.2911987304688 MULTI HCD FTMS 0 0 0 3376 8829.2626953125 0.7853576938892972 3 -0.05932044982910156 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PRPVM(Oxidation (M))ISR_ REV__ENST00000346178.8_1_11:62394342-62394778:-|nuORF 1.4819007175156935 0.3397831423917744 2 P 1 -1 6.9897 0 0 0.61825 0 0 413.1932872698008 617.3076876275999 1030.5009748974007 0 0 0 0 0 0 0 0 0 P 0.61825 + + 1 + NaN NaN 86061 NaN 1667 1713 3376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3384 27.32 NaN 864200 35 0 111130 0.327 -1 0 76 485.76416282249994 969.5137727117999 2 485.7638244628906 MULTI HCD FTMS 0 0 0 3383 675066.8125 0.43149131410057945 -6 0.10269737243652344 1 NaN NaN 2 [PS]EAQPKT 8 -1 101.75 0 0 10.495 0 0 0 128.0734325682446 128.0734325682446 59.036757287974666 0 0 0 0 2.75 1.6989700043360187 2.1778259348524363 0.7302046884880937 [PS]EAQPKT 10.495 - 816 NaN NaN 214070.2 NaN 1668 1714 3383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3385 27.324 NaN 50827 35 0 7248.2 0.261 -1 CCCSLYSCM 9 28 543.1651905647856 1084.315828196371 2 543.1653442382812 MULTI HCD FTMS 0 0 0 3383 24066.240234375 0.3029493882701082 -19 0.2745399475097656 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))CCSLYSCM(Oxidation (M))_ ENST00000409158.5_1_2:131904864-131905029:+|nuORF 0.5247636613948944 0.34703895399870666 2 Q 1 -1 3.0989 0 0 0.2858 0 0 751.7829740477367 201.45813928775627 953.241113335493 0 0 0 0 0 0 0 0 0 Q 0.2858 - 2 + NaN NaN 96479.7 NaN 1669 1714 3383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3386 27.33 NaN 53250 35 0 14745 0.261 + 8644 HFAVAGETI 9 22 472.74348697857187 NaN 0 472.7430419921875 PEAK HCD FTMS 0 0 0 3383 16359.2734375 0.26896844629874833 -13 0.1740264892578125 3 Unmodified _HFAVAGETI_ ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR 2.302733041254933 0.2840881193086663 2 V 1 8 3.9794 0 0 0.42178 0 0 489.2376930960125 352.14011560611567 841.3778087021282 0 0 0 0 0 0 0 0 0 + V 0.42178 + + 1 + NaN NaN 93433.5 NaN 1670 1714 3383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3387 27.334 NaN 53446 35 0 9652.5 0.261 + 3723 EMDILQNI 8 32 488.24316879563645 NaN 0 488.24261474609375 PEAK HCD FTMS 0 0 0 3383 15080.0439453125 0.8592570775911679 35 -0.4335956573486328 4 Unmodified _EMDILQNI_ REV__ENSG00000149600|ENST00000278980|COMMD7;REV__ENST00000610160.1_1_20:31291624-31315937:-|nuORF;REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92774 NaN 1671 1714 3383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3389 27.338 NaN 123620 35 0 15223 0.325 + 25436 SESAQSKML 9 41 490.73979847258784 979.4650440119757 2 490.73974609375 MULTI HCD FTMS 0 0 0 3388 143291.65625 0.572781823011528 -4 0.08176803588867188 1 Unmodified _SESAQSKML_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 40.23920728925047 0.06424668180817725 2 {[ES]|[DT]|[{I|L}C]}[QA]{[CA]|SS}KM{I|L} 9 2 + 31.761 0 0 3.2427 3.2427 88.66 0 0 0 2.4646217069344836 18.80265290781964 2.4646217069344836 31.761453081260388 0 1.2614393726401687 0 0.805462187404089 0 {[ES]|[DT]|[{I|L}C]}[QA]{[CA]|SS}KM{I|L} 3.2427 - 41 NaN NaN 96546.1 NaN 1672 1715 3388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3390 27.343 NaN 178990 35 0 55077 0.261 -1 PMTMEKTR 8 43 513.2413867126156 1024.4682204920312 2 513.2528076171875 MULTI HCD FTMS 0 0 0 3388 18323.673828125 0.6432502312327776 6 -0.07172012329101562 2 2 Oxidation (M) _PM(Oxidation (M))TM(Oxidation (M))EKTR_ ENST00000373691.4_2_X:70837173-70837287:-|nuORF 8.593279151180031 0.5292430274356741 2 DR 2 -1 17.474 0 0 1.7057 0 0 0 750.3358858697874 750.3358858697874 0.4845500650402812 0 0 0 0 0 0 0 0 DR 1.7057 - 24 + NaN NaN 111499 NaN 1673 1715 3388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3391 27.347 NaN 51818 35 0 6681.2 0.262 + 12018 KHCSYQDIL 9 33 553.7687618185507 1105.5229707039014 2 554.2565307617188 MULTI HCD FTMS 0 0 0 3388 25823.873046875 0.6989263391976903 -1 0.018991470336914062 3 Unmodified _KHCSYQDIL_ ENSG00000158481|ENST00000368170|CD1C 1.4819007175156935 0.3397831423917744 2 H 1 8 1.1092 0 0 0.10034 0 0 668.9573101587827 296.4929598443969 965.4502700031796 0 0 0 0 0 0 0 0 0 + H 0.10034 + + 1 + NaN NaN 89561.4 NaN 1674 1715 3388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3392 27.35 NaN 24501 35 0 4771.6 0.261 -1 LPIWVFGFF 9 17 584.3133544921875 NaN 0 584.3133544921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LPIWVFGFF_ ENST00000263097.8_1_19:1037929-1038361:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91894.3 NaN 1675 1715 3388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3394 27.355 NaN 72549 35 0 11540 0.327 + 15783 LPHANEVSQ 9 35 497.7520676182106 993.4895823032213 2 497.7522277832031 MULTI HCD FTMS 0 0 0 3393 65090.77734375 0.8351530383587511 -2 0.03553199768066406 1 Unmodified _LPHANEVSQ_ ENSG00000110244|ENST00000357780|APOA4 21.536976647645854 0.1742816388551942 2 VSQ 3 6 39.693 0 0 3.9953 0 0 661.3181019513687 0 661.3181019513687 0 37.21848749616356 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + VSQ 3.9953 + + 15 NaN NaN 97776.5 NaN 1676 1716 3393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3395 27.359 NaN 51283 35 0 5681 0.261 -1 SPEEKQEML 9 29 553.7553535910436 1105.496154248887 2 553.7687377929688 MULTI HCD FTMS 0 0 0 3393 9631.54296875 0.03333192471842843 80 -1.1668891906738281 2 Oxidation (M) _SPEEKQEM(Oxidation (M))L_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 1.4819007175156935 0.3397831423917744 2 A{[QS]|[NT]} 3 -1 10.458 0 0 0.94596 0 0 801.3354969709 0 801.3354969709 0 6.962724883926656 0 0 0 0 0 0 0 A{[QS]|[NT]} 0.94596 - 22 NaN NaN 95707.6 NaN 1677 1716 3393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3396 27.363 NaN 52869 35 0 8742.8 0.261 -1 0 20 479.76987519863974 957.5251974640795 2 479.76922607421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 A[PS] 3 -1 14.705 0 0 1.5357 0 0 684.3912220685562 0 684.3912220685562 0 -0.7795501485934846 -0.7795501485934846 0 0 0.4247425010840047 0 0 0 A[PS] 1.5357 - 4 NaN NaN 90399.4 NaN 1678 1716 3393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3397 27.367 NaN 41139 35 0 7954.6 0.261 + -1 LSMTHEMS 8 29 476.1984793406867 NaN 0 476.19903564453125 PEAK HCD FTMS 0 0 0 3393 9731.109375 0.46125739263973503 1 -0.016510009765625 4 Oxidation (M) _LSMTHEM(Oxidation (M))S_ REV__ENSG00000153250|ENST00000348849|RBMS1;REV__ENST00000474147.5_1_2:161135046-161135193:-|nuORF;REV__ITGB6-RBMS1|1|fusion;REV__ITGB6-RBMS1|2|fusion;REV__ITGB6-RBMS1|3|fusion;REV__ITGB6-RBMS1|4|fusion;REV__ITGB6-RBMS1|5|fusion;REV__ITGB6-RBMS1|6|fusion;REV__nc|ENSG00000153250|P29558-2|RBMS1 2.302733041254933 0.38822285293237185 2 S 1 -1 6.9897 0 0 0.73546 0 0 166.05533162883586 694.2693575494749 860.3246891783108 0 0 0 0 0 0 0 0 0 S 0.73546 + + 2 + NaN NaN 91158.5 NaN 1679 1716 3393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3399 27.371 NaN 18744000 35 0 1779200 0.326 + 2551 DTAAQITQR 9 115 502.26203023949734 1002.5095075457947 2 502.2623596191406 MULTI HCD FTMS 0 0 0 3398 20234670 0.8319303829631035 -4 0.07583045959472656 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 228.36842504977758 2.46120000212446E-24 2 DTAAQ{I|L}TQR 9 0 + 139.84 0 0 13.949 13.949 94.665 0 0 0 88.85151878060192 16.227248456092468 16.227248456092468 9.208187539523749 0 2.829689690656103 1.3979400086720375 1.3252574989159953 1.8728473723926469 + + DTAAQ{I|L}TQR;DTAA[AG]{I|L}TQR;DTAAQ{I|L}T[AG]R;DTAA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;[TA]DAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;DT[KS][PA]TQR;[TA]DAQ{I|L}T[AG]R 13.949;13.031;13.031;12.116;9.6595;8.8554;8.741;8.3613;8.1917;7.9369 +;-;-;-;+;-;-;-;-;- + 5316 + NaN NaN 951585.6 NaN 1680 1717 3398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3400 27.376 NaN 68905 35 0 9612.7 0.261 + 13006 KYIQRQETI 9 30 589.8300711224944 1177.6455893117886 2 589.830078125 MULTI HCD FTMS 0 0 0 3398 69912.0234375 0.06640880144060468 18 -0.16520118713378906 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 17.44264345198275 0.2096557692338702 2 KY{I|L}Q 4 5 36.938 0 0 3.1366 0 0 0 642.3208712213499 642.3208712213499 18.979400086720375 0 0 0 0 0.5 0 0 0 + KY{I|L}Q 3.1366 + + 15 + NaN NaN 93256.3 NaN 1681 1717 3398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3401 27.379 NaN 65952 35 0 7410.3 0.261 + 28474 TPNEERNVM 9 31 545.2534846674798 1088.4924164017596 2 545.25341796875 MULTI HCD FTMS 0 0 0 3398 16433.521484375 0.1569280280211203 -1 0.016510009765625 3 Unmodified _TPNEERNVM_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 7.101721422024254 0.29718071671418667 2 VM 2 7 20.969 0 0 1.9264 0 0 840.3701039044937 0 840.3701039044937 0 1.5051499783199063 0 0 0 0 0 0 0 + VM 1.9264 + + 6 NaN NaN 96499.1 NaN 1682 1717 3398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3402 27.383 NaN 43480 35 0 5309.3 0.261 + 33465 YHGNLTGRA 9 37 494.7505090090993 NaN 0 494.7507019042969 PEAK HCD FTMS 0 0 0 3398 11941.8173828125 0.5663658009830934 1 -0.016229629516601562 4 Unmodified _YHGNLTGRA_ ENSG00000260802|ENST00000569275|SERTM2 6.2057823575117 0.2651744870083793 2 {I|L} 1 8 6.3515 0 0 0.6432 0 0 471.1840491687861 400.1947420709594 871.3787912397455 0 0 0 0 0 0.3252574989159953 0 0 0 + {I|L} 0.6432 + + 1 + NaN NaN 94978.7 NaN 1683 1717 3398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3404 27.388 NaN 159170 35 0 54993 0.411 + 27502 TAAAIGATPR 10 57 464.7639691431312 NaN 0 464.7635803222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TAAAIGATPR_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 97.74103586103693 0.00024674618872223147 2 AA{I|L}GAT 6 4 61.776 0 0 6.6604 0 0 172.08743921758293 268.14154993228755 440.2289891498705 0 0 0 0 0 2.8807196863200843 0 1.110924374808178 0 + AA{I|L}GAT 6.6604 + + 177 + NaN NaN 128190.8 NaN 1684 1718 3403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3407 27.402 NaN 173570 35 0 17554 0.411 + 22354 QPMQPTPSM 9 62 524.7257602617792 1047.4369675903583 2 525.2281494140625 MULTI HCD FTMS 0 0 0 3406 41339.47265625 0.7067966423685748 1 -0.0076007843017578125 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 58.678817012210395 0.019429721296335044 2 T[WQ]PS{M(Oxidation (M))|F} 6 5 31.164 0 0 2.9752 0 0 283.1136166155521 0 283.1136166155521 0 11.611140571089607 0 0 0 0.9247425010840047 0 0.7302046884880937 0 T[WQ]PS{M(Oxidation (M))|F} 2.9752 - 139 + NaN NaN 140253.6 NaN 1685 1720 3406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3409 27.41 NaN 691670 35 0 193600 0.327 -1 0 38 528.7177395872529 1055.4209262413058 2 528.7175903320312 MULTI HCD FTMS 0 0 0 3408 333177.25 0.8617481335490437 1 -0.009578704833984375 1 NaN NaN 2 AN 2 -1 14.693 0 0 1.3921 0 0 852.3397063692681 0 852.3397063692681 0 7.703037561203843 0 0 0 0 0 0 0 AN 1.3921 - 6 NaN NaN 192183 NaN 1686 1721 3408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3410 27.414 NaN 180540 35 0 15815 0.261 + 3833 EPGQGLTQR 9 68 493.2564564844058 NaN 0 493.2573547363281 PEAK HCD FTMS 0 0 0 3408 88258 1 0 0 2 Unmodified _EPGQGLTQR_ REV__nc|ENSG00000278030|P04435|TRBV7-9 47.594388314883695 0.053919811388395404 2 AQ{I|L}TQ 5 -1 63.263 0 0 6.4259 0 0 269.0997399462013 171.08844934635002 440.18818929255133 0 0 0 0 0 2.6549471895720984 0 0.3252574989159953 1.3283409326844267 AQ{I|L}TQ 6.4259 - 127 + NaN NaN 99051.3 NaN 1687 1721 3408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3412 27.419 NaN 165760 35 0 16173 0.327 -1 AAEPNKTEI 9 55 507.75835090279026 1013.5021488723805 2 507.7578125 MULTI HCD FTMS 0 0 0 3411 72186.3125 0.42762075671977273 8 -0.06940078735351562 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AAEPNKTEI_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000528072.1_1_11:47198065-47198404:-|nuORF 30.636539890814138 0.10832830463492794 2 [PS]E[KQ]{I|L}E[PS] 9 -1 + 37.557 0 0 3.7057 3.7057 89.405 0 0 0 5.589315389975987 25.874687072063203 5.589315389975987 37.55712471998742 0 0.8494850021680094 1.5228787452803376 0.3252574989159953 0 [PS]E[KQ]{I|L}E[PS] 3.7057 - 55 NaN NaN 104690.7 NaN 1688 1722 3411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3413 27.424 NaN 161160 35 0 17946 0.262 -1 QPMQPTPSM 9 37 524.7257602617792 1047.4369675903583 2 524.7258911132812 MULTI HCD FTMS 0 0 0 3411 68238.1484375 0.8568004109746394 2 -0.017284393310546875 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 24.020572477871973 0.15282392193088168 2 {M(Oxidation (M))|F} 1 -1 18.852 0 0 1.7998 0 0 882.39115872981 0 882.39115872981 0 10.766062568876716 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7998 + + 7 + NaN NaN 112817.3 NaN 1689 1722 3411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3415 27.429 NaN 636230 35 0 104040 0.411 + 25955 SPDENENEV 9 96 516.70948184297 1031.40441075274 2 516.7092895507812 MULTI HCD FTMS 0 0 0 3414 446429.65625 0.8761340235079855 1 -0.007549285888671875 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 99.75527289724121 0.004270341300239591 2 [TP]DDNENEV 9 2 + 73.79 0 0 7.1543 7.1543 90.553 0 0 0 2.2868817414666154 54.11475155269861 2.2868817414666154 9.208187539523749 0 1.274227503252014 1.154901959985743 0.9559771852360797 0.805462187404089 [TP]DDNENEV;[TP]DDNEGGEV;[TP]DDGGENEV;[TP]DDNE{[SA]|[TG]}[PS] 7.1543;6.2615;6.2615;2.1285 -;-;-;- 696 NaN NaN 275910.3 NaN 1690 1723 3414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3418 27.444 NaN 1451900 35 0 141470 0.325 -1 0 90 485.76416282249994 969.5137727117999 2 485.76397705078125 MULTI HCD FTMS 0 0 0 3417 1041653.0625 0.6658070585791359 5 -0.04479408264160156 1 NaN NaN 2 SPEAQPK 7 -1 88.708 0 0 9.1498 0 0 0 229.1191347711547 229.1191347711547 54.66312853471372 0 0 0 0 2.473197507588033 1.5228787452803376 0.6989700043360187 0.4247425010840047 SPEAQPK 9.1498 - 748 + NaN NaN 305155.8 NaN 1691 1725 3417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3419 27.449 NaN 144400 35 0 18405 0.261 + 9406 HPTSSLSTW 9 53 508.24589354914076 1014.4772341650815 2 508.24566650390625 MULTI HCD FTMS 0 0 0 3417 40722.58984375 0.3463281745355989 10 -0.09234619140625 2 Unmodified _HPTSSLSTW_ REV__ENSG00000143178|ENST00000367821|TBX19;REV__ENST00000465440.1_1_1:168277945-168282237:+|nuORF 7.289230182591677 0.29575926068275815 2 HPA 3 -1 28.812 0 0 2.8401 0 0 0 706.3067721002561 706.3067721002561 9.348331157524967 0 0 0 0 0.5 0 0 0 HPA 2.8401 - 22 + NaN NaN 104944.1 NaN 1692 1725 3417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3421 27.454 NaN 74052 35 0 20710 0.411 + 26452 STPDLAANR 9 41 472.74348697857187 NaN 0 472.7437438964844 PEAK HCD FTMS 0 0 0 3420 27570.615234375 0.4532979763081514 -1 0.009777069091796875 1 Unmodified _STPDLAANR_ ENSG00000160877|ENST00000292431|NACC1 9.38312468134398 0.24977752951804 2 {I|L} 1 8 3.9794 0 0 0.42178 0 0 400.157248760075 427.2063082330688 827.3635569931438 0 0 0 0 0 0 0 0 0 + {I|L} 0.42178 + + 5 + NaN NaN 107585.4 NaN 1693 1726 3420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3423 27.461 NaN 216680 35 0 29175 0.327 + 25437 SESAQSKML 9 47 490.73979847258784 979.4650440119757 2 490.7394714355469 MULTI HCD FTMS 0 0 0 3422 201037.9375 0.8036118734982355 8 -0.07532501220703125 1 Unmodified _SESAQSKML_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 65.47368725323818 0.010552856507075443 2 {[ES]|[DT]|[{I|L}C]}SAQSKM{I|L} 9 0 + 59.179 0 0 6.042 6.042 86.788 0 0 0 5.6424927368725974 45.199718873656636 5.6424927368725974 6.7609125905568135 0 2.0924778212679485 0 1.1421590589602533 0 + + {[ES]|[DT]|[{I|L}C]}SAQSKM{I|L};{[MG]|[TS]}DAQSKM{I|L};{[ES]|[DT]|[{I|L}C]}[QA]SSKM{I|L} 6.042;5.3517;4.8179 +;-;- + 80 NaN NaN 116623.5 NaN 1694 1727 3422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3424 27.465 NaN 136460 35 0 10355 0.261 + 21093 PNEQQITR 8 53 493.2564564844058 NaN 0 493.25567626953125 PEAK HCD FTMS 0 0 0 3422 46795.00390625 0.5302069376855356 6 -0.05207633972167969 2 Unmodified _PNEQQITR_ REV__ENSG00000100106|ENST00000644935|TRIOBP;REV__ENSG00000100106|ENST00000644935|TRIOBP;REV__ENST00000492485.5_1_22:38106528-38122511:+|nuORF;REV__ENST00000492485.5_1_22:38106528-38122511:+|nuORF;REV__nc|ENSG00000100106|Q9H2D6-2|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-2|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP;REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP 27.628801355627647 0.3800254176335464 2 AQ{I|L}TQ 5 -1 61.956 0 0 6.2931 0 0 269.1021229040477 171.08858667545158 440.1907095794993 0 0 0 0 0 2.6989700043360187 0 0.3494850021680094 1.066901560044258 AQ{I|L}TQ 6.2931 - 82 + NaN NaN 95313.3 NaN 1695 1727 3422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3426 27.47 NaN 233920 35 0 71187 0.327 + 1879 CWVHLPDR 8 44 513.2531464856489 1024.4917400380978 2 513.253662109375 MULTI HCD FTMS 0 0 0 3425 108725.1015625 0.392265642017573 7 -0.06611442565917969 1 Unmodified _CWVHLPDR_ SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|46|1|anti-sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|57|2|anti-sense 9.347437153973935 0.5250182646323369 2 R 1 7 22.985 0 0 2.2435 0 0 850.3803336433697 0 850.3803336433697 0 6.557875029352971 0 0 0 0.4247425010840047 0 0 0.3252574989159953 + R 2.2435 + + 39 + NaN NaN 133204 NaN 1696 1728 3425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3427 27.475 NaN 161820 35 0 17501 0.261 -1 QPMQPTPSM 9 48 524.7257602617792 1047.4369675903583 2 524.725341796875 MULTI HCD FTMS 0 0 0 3425 56683.21875 0.7117163380370389 8 -0.07567405700683594 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 24.020572477871973 0.15282392193088168 2 {M(Oxidation (M))|F} 1 -1 18.411 0 0 1.7577 0 0 882.3914333880131 0 882.3914333880131 0 9.75386578922908 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.7577 + + 10 + NaN NaN 102260.9 NaN 1697 1728 3425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3429 27.48 NaN 106020 35 0 18812 0.327 -1 GFCMMCTM 8 30 543.1651905647856 1084.315828196371 2 543.1654663085938 MULTI HCD FTMS 0 0 0 3428 55331.21484375 0.6965175085891981 -4 0.035503387451171875 1 2 Carbamidomethyl (C),3 Oxidation (M) _GFC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TM(Oxidation (M))_ ENSG00000106346|ENST00000306177|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;nc|ENSG00000106346|Q9H9J4|USP42 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94977.2 NaN 1698 1729 3428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3430 27.484 NaN 63590 35 0 7839.5 0.261 + 23117 REYVNVSQ 8 29 497.7520676182106 993.4895823032213 2 497.7525329589844 MULTI HCD FTMS 0 0 0 3428 26235.326171875 0.3366146981017444 11 -0.12293052673339844 2 Unmodified _REYVNVSQ_ ENSG00000213658|ENST00000395456|LAT;ENST00000562701.5_1_16:28997691-29001330:+|nuORF;ENST00000564447.5_1_16:29000600-29001330:+|nuORF;nc|ENSG00000213658|O43561-3|LAT;nc|ENSG00000213658|O43561-4|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT 9.38312468134398 0.524755689532147 2 VSQ 3 5 31.198 0 0 3.1402 0 0 661.3150501935562 0 661.3150501935562 0 31.197887582883936 0 0 0 0.5 0 0 0 + VSQ 3.1402 + + 4 NaN NaN 82033.5 NaN 1699 1729 3428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3432 27.489 NaN 239450 35 0 32652 0.412 -1 0 66 479.76987519863974 957.5251974640795 2 479.7697448730469 MULTI HCD FTMS 0 0 0 3431 172740.546875 0.9019706722741593 2 -0.016775131225585938 1 NaN NaN 2 GGA[PS] 5 -1 33.456 0 0 3.494 0 0 570.348602271332 0 570.348602271332 0 6.544387449636204 0 0 0 1.1237125054200234 0 0 0 GGA[PS] 3.494 - 202 NaN NaN 150242.7 NaN 1700 1730 3431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3434 27.496 NaN 11427000 35 0 1108700 0.327 + 2552 DTAAQITQR 9 107 502.26203023949734 1002.5095075457947 2 502.262451171875 MULTI HCD FTMS 0 0 0 3433 10524484 0.4327047589414137 10 -0.119873046875 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 228.36842504977758 2.46120000212446E-24 2 DTAAQ{I|L}TQR 9 0 + 134.45 0 0 13.412 13.412 95.339 0 0 0 87.87233029561972 14.092568545288074 14.092568545288074 9.208187539523763 0 2.829689690656103 1.3979400086720375 0.9604093769761876 1.6989700043360187 + + DTAAQ{I|L}TQR;DTAA[AG]{I|L}TQR;DTAAQ{I|L}T[AG]R;DTAA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;[TA]DAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQT{I|L}QR;DT[KS][PA]TQR 13.412;12.493;12.493;11.579;9.8852;8.9667;8.2989;8.1115;7.8068;7.6741 +;-;-;-;+;-;-;-;-;- + 6203 + NaN NaN 736229.8 NaN 1701 1731 3433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3435 27.501 NaN 38086 35 0 5923.1 0.261 + 13007 KYIQRQETI 9 26 589.8300711224944 1177.6455893117886 2 589.830322265625 MULTI HCD FTMS 0 0 0 3433 47287.40234375 0.04491787761936894 32 -0.47967529296875 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 2.9952420565917617 0.3283108881486655 2 KY{I|L} 3 6 26.198 0 0 2.2246 0 0 0 770.3805025690061 770.3805025690061 23.97940008672037 0 0 0 0 0 0 0 0 + KY{I|L} 2.2246 + + 4 + NaN NaN 104750.8 NaN 1702 1731 3433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3437 27.506 NaN 69223 35 0 5371 0.411 + 8476 HADPHSIDTL 10 43 553.2672679363698 1104.5199829395394 2 553.2672119140625 MULTI HCD FTMS 0 0 0 3436 34088.02734375 0.862252578274563 7 -0.08327484130859375 1 Unmodified _HADPHSIDTL_ REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF 19.256988751693697 0.33098864134661865 2 T{I|L} 2 -1 27.206 0 0 2.4632 0 0 872.3783423810726 0 872.3783423810726 0 -4.208187539523749 -4.208187539523749 0 0 0.4247425010840047 0 0.5 0 T{I|L} 2.4632 + + 16 NaN NaN 120081.7 NaN 1703 1732 3436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3439 27.513 NaN 52922 35 0 5357.8 0.327 + 8886 HPALSGSPDPQ 11 35 553.2672679363698 1104.5199829395394 2 553.2671508789062 MULTI HCD FTMS 0 0 0 3438 17932.544921875 0.4536015809300315 8 -0.10307121276855469 1 Unmodified _HPALSGSPDPQ_ ENSG00000183246|ENST00000433039|RIMBP3C;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000275793|ENST00000619918|RIMBP3 2.498486711656943 0.4079631525365919 2 E 1 11 4.6041 0 0 0.41684 0 0 450.23313098817067 522.2209566705686 972.4540876587394 0 0 0 0 0 0 0 0 0 E 0.41684 - 10 + NaN NaN 89391.5 NaN 1704 1733 3438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3440 27.518 NaN 33697 35 0 4703.5 0.261 + 28475 TPNEERNVM 9 19 545.2534846674798 1088.4924164017596 2 545.2530517578125 MULTI HCD FTMS 0 0 0 3438 24221.7109375 0.23129950183431655 14 -0.20917129516601562 2 Unmodified _TPNEERNVM_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 2.9952420565917617 0.3283108881486655 2 TP 2 7 18.583 0 0 1.7073 0 0 0 887.3586519830686 887.3586519830686 18.58349385648225 0 0 0 0 0 0 0 0 + TP 1.7073 + + 1 + NaN NaN 97666.8 NaN 1705 1733 3438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3441 27.521 NaN 31739 35 0 6095.8 0.262 + -1 MYSIQPDDDEM 11 23 459.1721293789616 NaN 0 459.17218017578125 PEAK HCD FTMS 0 0 0 3438 14618.2763671875 0.5962954597602249 7 -0.08933639526367188 3 2 Oxidation (M) _M(Oxidation (M))YSIQPDDDEM(Oxidation (M))_ REV__ENSG00000065150|ENST00000651721|IPO5;REV__nc|ENSG00000065150|O00410-2|IPO5;REV__nc|ENSG00000065150|O00410-3|IPO5 0.09484139111097674 0.34185110575506755 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.50245 0 0 622.2344127112451 131.04622827701408 753.2806409882592 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.50245 - 1 + NaN NaN 89655.8 NaN 1706 1733 3438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3442 27.525 NaN 70064 35 0 11346 0.261 + -1 RENVDPLM 8 43 495.2396404259802 988.4647279187604 2 495.23956298828125 MULTI HCD FTMS 0 0 0 3438 26631.828125 0.7297107389498734 -17 0.1584625244140625 4 Oxidation (M) _RENVDPLM(Oxidation (M))_ REV__ENSG00000152404|ENST00000282251|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 10.823927491677226 0.514154816617796 2 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.9046 0 0 710.3351917951187 0 710.3351917951187 0 28.711375162600703 0 0 0 0.7742275032520141 0 0 0 {I|L}{M(Oxidation (M))|F} 2.9046 + + 5 NaN NaN 87657.2 NaN 1707 1733 3438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3444 27.53 NaN 133990 35 0 71141 0.327 + 27503 TAAAIGATPR 10 16 464.7639691431312 NaN 0 464.76373291015625 PEAK HCD FTMS 0 0 0 3443 15089.0888671875 0.21130881754903863 16 -0.23722457885742188 1 Unmodified _TAAAIGATPR_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 12.872603262515298 0.32916712473430193 2 {I|L}G 2 8 15.701 0 0 1.6928 0 0 314.15829609700614 440.2249849908813 754.3832810878874 0 0 0 0 0 0.7742275032520141 0 0 0 + {I|L}G 1.6928 + + 9 + NaN NaN 94414.8 NaN 1708 1734 3443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3446 27.537 NaN 176850 35 0 43481 0.327 -1 TVGWMMWN 8 33 528.7177395872529 1055.4209262413058 2 528.7174682617188 MULTI HCD FTMS 0 0 0 3445 68578.53125 0.1773753199122157 15 -0.230010986328125 1 2 Oxidation (M) _TVGWM(Oxidation (M))M(Oxidation (M))WN_ ENSG00000081760|ENST00000316519|AACS;ENST00000316543.14_1_12:125591673-125609365:+|nuORF;nc|ENSG00000081760|Q86V21-2|AACS 2.577480529830294 0.5381683276125971 2 R 1 -1 3.9794 0 0 0.37704 0 0 430.18821247353077 466.11850916080317 896.3067216343339 0 0 0 0 0 0 0 0 0 R 0.37704 - 2 + NaN NaN 102095.4 NaN 1709 1735 3445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3447 27.541 NaN 56466 35 0 9101.1 0.261 + 9932 IDKISYYY 8 30 532.7675355214404 1063.5205181096808 2 533.269775390625 MULTI HCD FTMS 0 0 0 3445 11331.208984375 0.7800834099030048 5 -0.06608772277832031 2 Unmodified _IDKISYYY_ REV__ENSG00000053747|ENST00000313654|LAMA3;REV__ENSG00000101680|ENST00000389658|LAMA1;REV__ENSG00000130702|ENST00000252999|LAMA5;REV__ENST00000370677.4_1_20:60920618-60942301:-|nuORF;REV__ENST00000579014.5_1_18:7043201-7117719:-|nuORF;REV__LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant;REV__LAMA3-SNRPD1|1|fusion;REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;REV__LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;REV__nc|ENSG00000053747|Q16787-3|LAMA3;REV__nc|ENSG00000130702|O15230-2|LAMA5 2.0597508629832335 0.5389364538378849 2 {NN|[MP]|[D{I|L}]|[EV]}K 3 -1 10.458 0 0 0.9833 0 0 0 704.2888887994749 704.2888887994749 10.45757490560675 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}K 0.9833 + + 2 + NaN NaN 88122.2 NaN 1710 1735 3445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3449 27.546 NaN 90906 35 0 5974 0.327 + 4177 ETSPLTAEK 9 34 488.2534279673053 974.4923030014106 2 488.2533264160156 MULTI HCD FTMS 0 0 0 3448 15899.5146484375 0.3591711764450498 -14 0.1265125274658203 1 Unmodified _ETSPLTAEK_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 4.897010918128616 0.31389406404703984 2 YTA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 5 5.6618 0 0 0.581 0 0 364.1947698976981 0 364.1947698976981 0 1.6824376479242167 0 0 0 0 0 0 0 YTA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 0.581 - 75 + NaN NaN 93848 NaN 1711 1736 3448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3450 27.551 NaN 52364 35 0 9056.7 0.261 + 33020 YCEEVNGLPT 10 18 562.7476174624155 NaN 0 562.7484130859375 PEAK HCD FTMS 0 0 0 3448 2692.68994140625 0.38425012010801535 1 -0.009687423706054688 2 Unmodified _YCEEVNGLPT_ REV__ENSG00000196118|ENST00000543610|CFAP119;REV__ENST00000544487.5_1_16:30768821-30771097:-|nuORF;REV__nc|ENSG00000196118|A1A4V9-2|CFAP119 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92640.7 NaN 1712 1736 3448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3452 27.556 NaN 453260 35 0 87471 0.327 + 25956 SPDENENEV 9 53 516.70948184297 1031.40441075274 2 516.70947265625 MULTI HCD FTMS 0 0 0 3451 268362.28125 0.5266704887044432 15 -0.24808692932128906 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 53.40400417844725 0.026808823219830042 2 ENENEV 6 3 62.384 0 0 6.0484 0 0 299.11079604316564 0 299.11079604316564 0 50.9568378181978 0 0 0 1.1989700043360187 0 0.3494850021680094 0.4247425010840047 + ENENEV 6.0484 + + 52 NaN NaN 157616 NaN 1713 1737 3451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3453 27.56 NaN 78874 35 0 19674 0.261 + 3734 EMTKYKPE 8 35 513.2531464856489 1024.4917400380978 2 513.2518310546875 MULTI HCD FTMS 0 0 0 3451 22062.052734375 0.07959693902976354 16 -0.271697998046875 2 Unmodified _EMTKYKPE_ ENSG00000185624|ENST00000331483|P4HB 4.3292370932331545 0.5355693454741696 2 D{I|L}{M(Oxidation (M))|F} 3 8 24.693 0 0 2.4102 0 0 0 646.2970675104124 646.2970675104124 13.455612550363796 0 0 0 0 0 0 0 0 D{I|L}{M(Oxidation (M))|F} 2.4102 - 9 + NaN NaN 92626.9 NaN 1714 1737 3451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3454 27.564 NaN 36850 35 0 5788 0.262 -1 FYEDFCCW 8 29 409.48118247091634 1225.421718012949 3 409.48162841796875 MULTI HCD FTMS 0 0 0 3451 8058.19384765625 0.3980833976898053 -1 0.009687423706054688 3 2 Carbamidomethyl (C) _FYEDFC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ ENSG00000205572|ENST00000380750|SERF1B 0.45834013312273997 0.5413123763662464 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2636 0 0 1060.3761532930255 0 1060.3761532930255 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2636 + + 3 + NaN NaN 86445.8 NaN 1715 1737 3451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3455 27.567 NaN 11303 35 0 4171.7 0.261 + 5018 FCYLFLSKK 9 10 574.8131896214476 1147.611826309695 2 574.812744140625 MULTI HCD FTMS 0 0 0 3451 2777.633544921875 0.2983392033454139 -3 0.026460647583007812 4 Unmodified _FCYLFLSKK_ REV__ENST00000275364.7_1_7:2769015-2769117:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82071.4 NaN 1716 1737 3451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3457 27.573 NaN 69525 35 0 11268 0.327 + 28758 TTGESVITR 9 28 482.25916676474395 962.5037805962879 2 482.25897216796875 MULTI HCD FTMS 0 0 0 3456 31868.142578125 1 0 0 1 Unmodified _TTGESVITR_ ENSG00000025800|ENST00000373625|KPNA6;KPNA6|p.S74C|1|0.07|ENSG00000025800|chr1:32156935-32156935|C/G|missense_variant 8.745405648335112 0.2847203663274469 2 W[PS] 3 8 15.458 0 0 1.606 0 0 574.3463612287125 0 574.3463612287125 0 2.269987279362626 0 0 0 0.5 0 0 0 W[PS] 1.606 - 12 NaN NaN 91084.2 NaN 1717 1738 3456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3458 27.577 NaN 60016 35 0 12905 0.261 -1 DLLDMKKM 8 30 513.2531464856489 1024.4917400380978 2 513.2527465820312 MULTI HCD FTMS 0 0 0 3456 21534.123046875 0.07769223924258256 17 -0.2756690979003906 2 2 Oxidation (M) _DLLDM(Oxidation (M))KKM(Oxidation (M))_ ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-2|RTN3 4.3292370932331545 0.5355693454741696 2 D{I|L} 2 -1 20.969 0 0 2.0468 0 0 0 793.3651335590725 793.3651335590725 5.484550065040281 0 0 0 0 0 0 0 0 D{I|L} 2.0468 + + 3 + NaN NaN 93259.1 NaN 1718 1738 3456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3459 27.581 NaN 35331 35 0 7709.6 0.261 + -1 GWAQGCKC 8 19 455.1886717438233 NaN 0 455.18890380859375 PEAK HCD FTMS 0 0 0 3456 5705.09619140625 0.39700924949791266 -39 0.46056365966796875 3 Carbamidomethyl (C) _GWAQGC(Carbamidomethyl (C))KC_ REV__ENSG00000115267|ENST00000649979|IFIH1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83300.1 NaN 1719 1738 3456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3460 27.584 NaN 51484 35 0 8323.9 0.261 + 3372 EEQVARESY 9 33 555.7566501225665 NaN 0 555.7568969726562 PEAK HCD FTMS 0 0 0 3456 12580.619140625 0.5803637186010241 -3 0.035701751708984375 4 Unmodified _EEQVARESY_ ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5 3.5964929083625545 0.27781873954207675 2 V 1 8 6.9897 0 0 0.62999 0 0 386.1520198722829 621.2647799127561 1007.4167997850391 0 0 0 0 0 0 0 0 0 + V 0.62999 + + 10 + NaN NaN 104634.3 NaN 1720 1738 3456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3462 27.59 NaN 57539 35 0 7443.5 0.327 + 25438 SESAQSKML 9 37 490.73979847258784 979.4650440119757 2 490.7394104003906 MULTI HCD FTMS 0 0 0 3461 30155.61328125 0.12054147185743777 20 -0.31972312927246094 1 Unmodified _SESAQSKML_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;nc|ENSG00000232629|P05538|HLA-DQB2 16.149105407346934 0.22083165093524068 2 M{I|L} 2 7 23.711 0 0 2.4208 0 0 717.3309803693375 0 717.3309803693375 0 10.21652514092061 0 0 0 0.4247425010840047 0 0 0 + M{I|L} 2.4208 + + 8 NaN NaN 102063 NaN 1721 1739 3461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3463 27.594 NaN 104290 35 0 10393 0.261 -1 RMDQQPAL 8 42 487.7404141093882 973.4662752855764 2 487.739501953125 MULTI HCD FTMS 0 0 0 3461 25382.927734375 0.7394992549846269 -3 0.042938232421875 2 Oxidation (M) _RM(Oxidation (M))DQQPAL_ ENSG00000185008|ENST00000696593|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2 12.531546534597751 0.5015908124873912 2 ATY[MT]{I|L} 6 -1 11.094 0 0 1.1396 0 0 275.1463768455726 0 275.1463768455726 0 7.994718957209843 0 0 0 0 0 0.25 0 ATY[MT]{I|L} 1.1396 - 51 NaN NaN 96645.9 NaN 1722 1739 3461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3464 27.598 NaN 68652 35 0 9825.3 0.261 + 28951 TYAEKLHRL 9 35 565.8196180926396 1129.6246832520792 2 565.8193969726562 MULTI HCD FTMS 0 0 0 3461 19180.6796875 0.15510618854314176 -8 0.09254837036132812 3 Unmodified _TYAEKLHRL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 17.11289562659939 0.2125047172822487 2 [YT]{[CP]|[EA]}K{I|L}HR{I|L} 9 0 + 43.618 0 0 3.8613 3.8613 89.802 0 0 0 25.65938719897659 7.632192780232785 7.632192780232785 43.61818737241734 0 0.3494850021680094 2 0 0 + + [YT]{[CP]|[EA]}K{I|L}HR{I|L} 3.8613 + + 16 + NaN NaN 93913.4 NaN 1723 1739 3461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3466 27.603 NaN 57665 35 0 8581.7 0.327 -1 CCCSLYSCM 9 26 543.1651905647856 1084.315828196371 2 543.1650390625 MULTI HCD FTMS 0 0 0 3465 20034.138671875 0.2521926979891909 7 -0.11983489990234375 1 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))CCSLYSCM(Oxidation (M))_ ENST00000409158.5_1_2:131904864-131905029:+|nuORF 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3468 0 0 919.2704618407055 0 919.2704618407055 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3468 + + 1 + NaN NaN 101244.8 NaN 1724 1740 3465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3467 27.608 NaN 63295 35 0 8484 0.261 -1 QPMQPTPSM 9 24 524.7257602617792 1047.4369675903583 2 524.7255249023438 MULTI HCD FTMS 0 0 0 3465 25977.255859375 0.32617126938447877 20 -0.32292938232421875 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 13.042465956692817 0.2476723265019929 2 Y 1 -1 7.4743 0 0 0.71358 0 0 384.1709896624271 497.1816500299438 881.3526396923709 0 0 0 0 0 0.3494850021680094 0 0 0 Y 0.71358 - 1 + NaN NaN 90554.8 NaN 1725 1740 3465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3468 27.612 NaN 36734 35 0 10134 0.261 + -1 QGNVQQEML 9 19 531.7478074342945 1061.4810619353889 2 531.7476196289062 MULTI HCD FTMS 0 0 0 3465 16842.873046875 0.5349703260256825 -11 0.12293052673339844 3 Oxidation (M) _QGNVQQEM(Oxidation (M))L_ REV__MAP2K5|p.V89L|1|0.32|ENSG00000137764|chr15:67580766-67580766|G/T|missense_variant 6.2057823575117 0.30397260197431997 2 E{M(Oxidation (M))|F}{I|L} 3 -1 30.445 0 0 2.8682 0 0 654.3094349591812 0 654.3094349591812 0 17.346368802282015 0 0 0 0 0 0.4247425010840047 0 E{M(Oxidation (M))|F}{I|L} 2.8682 + + 5 NaN NaN 90993.3 NaN 1726 1740 3465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3470 27.617 NaN 83379 35 0 7649.4 0.327 -1 0 39 479.76987519863974 957.5251974640795 2 479.7695007324219 MULTI HCD FTMS 0 0 0 3469 25589.4921875 0.1336164084753985 13 -0.22137451171875 1 NaN NaN 2 GA[PS] 4 -1 21.198 0 0 2.2138 0 0 627.3686390607437 0 627.3686390607437 0 6.593793813122062 0 0 0 0.5 0 0 0 GA[PS] 2.2138 - 13 NaN NaN 100474 NaN 1727 1741 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3471 27.622 NaN 84995 35 0 14566 0.261 + 28824 TVDSHEPRL 9 25 527.2699503907362 1052.5253478482723 2 527.2700805664062 MULTI HCD FTMS 0 0 0 3469 43941.03515625 0.5437902534599304 -3 0.04412078857421875 2 Unmodified _TVDSHEPRL_ ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-2|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2 17.11289562659939 0.2125047172822487 2 {[TV]|[{I|L}S]}DS{[YC]|[HE]}{I|L}[RP] 9 2 + 45.123 0 0 4.2871 4.2871 90.353 0 0 0 45.123337350737245 7.147642715192504 7.147642715192504 45.123337350737245 0 0.5 1.6989700043360187 0 0 {[TV]|[{I|L}S]}DS{[YC]|[HE]}{I|L}[RP] 4.2871 - 12 + NaN NaN 100404.6 NaN 1728 1741 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3472 27.625 NaN 46849 35 0 7929.5 0.261 + 28759 TTGESVITR 9 15 482.25916676474395 962.5037805962879 2 482.7605285644531 MULTI HCD FTMS 0 0 0 3469 11988.0908203125 0.8134436487171692 5 -0.09578704833984375 3 Unmodified _TTGESVITR_ ENSG00000025800|ENST00000373625|KPNA6;KPNA6|p.S74C|1|0.07|ENSG00000025800|chr1:32156935-32156935|C/G|missense_variant 5.296884461304476 0.3108627248283497 2 W[PS] 3 8 15.458 0 0 1.606 0 0 574.3422108380875 0 574.3422108380875 0 15.45757490560675 0 0 0 0.5 0 0 0 W[PS] 1.606 - 3 NaN NaN 97093 NaN 1729 1741 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3473 27.629 NaN 33812 35 0 6812 0.261 + -1 CPFGHCCW 8 20 562.1998333195205 NaN 0 562.2005004882812 PEAK HCD FTMS 0 0 0 3469 5485.85546875 0.6668831235897406 5 -0.09578704833984375 4 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90499.1 NaN 1730 1741 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3474 27.632 NaN 37526 35 0 7090.2 0.261 + 11699 KALAPADLME 10 25 529.7799264157754 1057.5452998983508 2 529.77978515625 MULTI HCD FTMS 0 0 0 3469 5363.9697265625 0.41731934089937794 -5 0.07026290893554688 5 Unmodified _KALAPADLME_ ENSG00000125686|ENST00000300651|MED1 1.4819007175156935 0.4674597685733628 2 D 1 9 3.9794 0 0 0.37629 0 0 551.3471699926113 388.16047083072505 939.5076408233363 0 0 0 0 0 0 0 0 0 + D 0.37629 + + 1 + NaN NaN 88952.9 NaN 1731 1741 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3475 27.635 NaN 38108 35 0 4650.2 0.261 + 22859 QYNPHVHQL 9 25 568.2860776707372 1134.5576024082743 2 568.2858276367188 MULTI HCD FTMS 0 0 0 3469 12362.140625 0.08607251406715113 -9 0.11059951782226562 6 Unmodified _QYNPHVHQL_ ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5 6.723162845929126 0.3000504726104499 2 N{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3 7 7.4473 0 0 0.6564 0 0 729.3929310529312 0 729.3929310529312 0 1.962724883926656 0 0 0 0 0 0 0 N{[WS]|[C(Carbamidomethyl (C)){I|L}]} 0.6564 - 9 NaN NaN 102864 NaN 1732 1741 3469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3477 27.641 NaN 1456000 35 0 142870 0.327 + 2553 DTAAQITQR 9 82 502.26203023949734 1002.5095075457947 2 502.2622375488281 MULTI HCD FTMS 0 0 0 3476 869242.8125 0.03573814180765242 21 -0.3360786437988281 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 226.55155137780747 3.406250385183877E-24 2 {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR 9 0 + 103.56 0 0 10.33 10.33 94.384 0 0 0 6.0569709929122695 56.54176925459433 6.0569709929122695 9.208187539523749 0 3.305462187404089 0 2.885151878060192 0.6861818737241735 + + {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;[TA]DAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}T[AG]R;[TA]DAQ{I|L}T[AG]R;[TA]DA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}[RN]{I|L}TQ[VG];[TA]DA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}[RN]{I|L}VAQS 10.33;9.4115;8.727;8.5563;7.8129;7.6378;6.9533;6.09;6.0392;5.1765 +;-;-;-;-;-;-;-;-;- + 1028 NaN NaN 308138.7 NaN 1733 1742 3476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3478 27.645 NaN 34868 35 0 4115.4 0.261 + 13008 KYIQRQETI 9 29 589.8300711224944 1177.6455893117886 2 589.8298950195312 MULTI HCD FTMS 0 0 0 3476 22154.01171875 0.02104389621419757 43 -0.6957283020019531 2 Unmodified _KYIQRQETI_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 7.101721422024254 0.29718071671418667 2 KY{I|L}Q 4 5 31.938 0 0 2.712 0 0 0 642.3262423150999 642.3262423150999 31.938200260161125 0 0 0 0 0 0 0 0 + KY{I|L}Q 2.712 + + 7 + NaN NaN 105757.8 NaN 1734 1742 3476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3479 27.649 NaN 94983 35 0 19281 0.264 + 1774 CLQSEAVLQRG 11 39 401.87788597622097 NaN 0 401.8782043457031 PEAK HCD FTMS 0 0 0 3476 7430.17626953125 0.5891962166922371 9 -0.1467609405517578 3 Unmodified _CLQSEAVLQRG_ ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11 2.735195868890462 0.3343611804837492 2 AA 2 10 10.969 0 0 1.3682 0 0 159.35974174534778 497.28421887418 656.6439606195278 0 0 0 0 0 0 0 0 0 AA 1.3682 - 14 + NaN NaN 101360.9 NaN 1735 1742 3476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3480 27.652 NaN 43278 35 0 7594.6 0.261 + 2154 DGYSVSHQIS 10 27 546.7517182198233 1091.4888835064464 2 546.7514038085938 MULTI HCD FTMS 0 0 0 3476 14091.111328125 0.30923048397118064 -5 0.08429908752441406 4 Unmodified _DGYSVSHQIS_ ENSG00000165699|ENST00000298552|TSC1;ENST00000493467.5_1_9:135785858-135804259:-|nuORF;nc|ENSG00000165699|Q92574-2|TSC1 10.799506525563784 0.4100970765206026 2 HQ{[TV]|[{I|L}S]} 4 6 25.445 0 0 2.3312 0 0 608.2427845685562 0 608.2427845685562 0 22.346368802282015 0 0 0 0.9247425010840047 0 0 0 + HQ{[TV]|[{I|L}S]} 2.3312 + + 9 NaN NaN 80962.2 NaN 1736 1742 3476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3482 27.658 NaN 89984 35 0 12848 0.327 -1 ASNVTNKTD 9 38 496.2382443360893 990.4619357389786 2 496.23779296875 MULTI HCD FTMS 0 0 0 3481 36531.0078125 0.6323930189082168 -4 0.06819343566894531 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ASNVTNKTD_ ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC 17.44264345198275 0.2096557692338702 2 VT{[QN]|[E{I|L}]|[KN]}TD 6 -1 28.416 0 0 2.869 0 0 314.12291152168126 0 314.12291152168126 0 15.94212497064703 0 0 0 1 0 0 0 VT{[QN]|[E{I|L}]|[KN]}TD 2.869 + + 12 NaN NaN 100789.1 NaN 1737 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3483 27.662 NaN 89574 35 0 19248 0.261 + 9504 HPYQPDPKM 9 24 556.7631686793784 1111.5117844255567 2 556.763671875 MULTI HCD FTMS 0 0 0 3481 33266.08203125 0.5230875549684312 -4 0.06819343566894531 2 Unmodified _HPYQPDPKM_ ENSG00000141582|ENST00000269397|CBX4 13.042465956692817 0.2476723265019929 2 HP 2 7 25.217 0 0 2.2687 0 0 0 874.3762911432249 874.3762911432249 25.21652514092061 0 0 0 0 0.4247425010840047 0 0 0 + HP 2.2687 + + 3 + NaN NaN 96797.4 NaN 1738 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3484 27.666 NaN 79194 35 0 23347 0.261 + 4200 EVAPPEYHR 9 19 549.2723754126291 1096.5301978920581 2 549.272216796875 MULTI HCD FTMS 0 0 0 3481 36186.8359375 0.8921742726464884 -1 0.017145156860351562 3 Unmodified _EVAPPEYHR_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 5.296884461304476 0.3108627248283497 2 {NN|[MP]|[D{I|L}]|[EV]}AP 4 5 16.198 0 0 1.4772 0 0 0 697.3062162313219 697.3062162313219 16.197887582883936 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}AP 1.4772 + + 3 + NaN NaN 93619 NaN 1739 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3485 27.669 NaN 53781 35 0 5777.6 0.261 + 2066 DELTLPVCCL 10 27 553.2672679363698 1104.5199829395394 2 553.26708984375 MULTI HCD FTMS 0 0 0 3481 14936.3291015625 0.3778126597912678 18 -0.2918872833251953 4 Unmodified _DELTLPVCCL_ REV__ENSG00000103657|ENST00000443617|HERC1 1.6526216038709556 0.46655611578153744 2 T 1 -1 5.4846 0 0 0.49656 0 0 149.1101213831967 851.3409517877561 1000.4510731709529 0 0 0 0 0 0 0 0 0 T 0.49656 + + 1 + NaN NaN 85492.3 NaN 1740 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3486 27.673 NaN 41362 35 0 6602.1 0.262 + -1 HIMLWNCECSG 11 24 455.8518253348664 1364.5336466047993 3 455.8514709472656 MULTI HCD FTMS 0 0 0 3481 6841.248046875 0.42759196543588307 -4 0.06819343566894531 5 Carbamidomethyl (C),Oxidation (M) _HIM(Oxidation (M))LWNC(Carbamidomethyl (C))ECSG_ REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF 0.40826533853263924 0.41713015341995335 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 82714 NaN 1741 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3487 27.676 NaN 30095 35 0 6034.9 0.261 -1 CLSMTEHALG 10 14 559.7519485654861 1117.4893441977722 2 559.752197265625 MULTI HCD FTMS 0 0 0 3481 13525.580078125 0.14787851436641533 -11 0.15146827697753906 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSMTEHALG_ ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENST00000556069.5_1_14:55251199-55255659:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A 3.5964929083625545 0.45626689593999237 2 E 1 -1 10.485 0 0 0.93822 0 0 592.235085019841 393.18869959049067 985.4237846103317 0 0 0 0 0 0.5 0 0 0 E 0.93822 + + 1 + NaN NaN 87652.6 NaN 1742 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3488 27.679 NaN 64051 35 0 8003.2 0.264 + 30712 VPGPPQGR 8 45 404.2257604396314 NaN 0 404.2264404296875 PEAK HCD FTMS 0 0 0 3481 1695.591552734375 0.13367851128204156 9 -0.14664268493652344 7 Unmodified _VPGPPQGR_ ENST00000484937.5_1_1:62582831-62626723:+|nuORF 2.302733041254933 0.38822285293237185 2 D 1 8 3.9794 0 0 0.49345 0 0 332.21755984235034 356.1690767877563 688.3866366301066 0 0 0 0 0 0 0 0 0 D 0.49345 - 1 + NaN NaN 93235.1 NaN 1743 1743 3481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3490 27.685 NaN 29614 35 0 5362.4 0.327 -1 PMAYADSM 8 23 459.1721293789616 NaN 0 459.17181396484375 PEAK HCD FTMS 0 0 0 3489 11813.052734375 0.4818673237856683 18 -0.2785358428955078 1 2 Oxidation (M) _PM(Oxidation (M))AYADSM(Oxidation (M))_ ENSG00000144227|ENST00000272641|NXPH2;NXPH2|p.P68S|1|0.07|ENSG00000144227|chr2:138671515-138671515|G/A|missense_variant 0.7936320650641473 0.38822285293237185 2 E 1 -1 4.6041 0 0 0.50245 0 0 622.2347178870264 162.02341638736564 784.258134274392 0 0 0 0 0 0 0 0 0 E 0.50245 - 1 + NaN NaN 91346 NaN 1744 1744 3489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3492 27.693 NaN 155310 35 0 25673 0.326 + 25957 SPDENENEV 9 40 516.70948184297 1031.40441075274 2 516.7094116210938 MULTI HCD FTMS 0 0 0 3491 85294.3046875 0.1673930960946894 23 -0.37810516357421875 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 18.373094154950223 0.20161688160436167 2 ENENEV 6 3 38.505 0 0 3.7333 0 0 299.11070449043126 0 299.11070449043126 0 36.515318870489466 0 0 0 0.4247425010840047 0 0 0.4247425010840047 + ENENEV 3.7333 + + 33 NaN NaN 104222.6 NaN 1745 1745 3491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3493 27.697 NaN 25275 35 0 4433.3 0.262 + -1 NYCTKSCMM 9 19 409.48118247091634 1225.421718012949 3 409.48162841796875 MULTI HCD FTMS 0 0 0 3491 14331.0634765625 0.7079698688208621 7 -0.11185836791992188 2 2 Carbamidomethyl (C),2 Oxidation (M) _NYC(Carbamidomethyl (C))TKSC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000100473|ENST00000396618|COCH;REV__nc|ENSG00000100473|O43405-2|COCH 0.9622753412299311 0.3437222896773173 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.1408 0 0 1060.3754971650958 0 1060.3754971650958 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1408 + + 2 + NaN NaN 86850.6 NaN 1746 1745 3491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3494 27.701 NaN 31987 35 0 3898.2 0.261 -1 LMKRLCPS 8 21 482.25916676474395 962.5037805962879 2 482.25921630859375 MULTI HCD FTMS 0 0 0 3491 7098.6943359375 0.22275205774967888 7 -0.11185836791992188 3 Oxidation (M) _LM(Oxidation (M))KRLCPS_ ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90513.4 NaN 1747 1745 3491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3495 27.704 NaN 41447 35 0 9085.9 0.261 + 26116 SPLDPTPTR 9 23 492.2614404162234 982.5083278992469 2 492.26141357421875 MULTI HCD FTMS 0 0 0 3491 11973.642578125 0.8276219075748031 -4 0.075653076171875 4 Unmodified _SPLDPTPTR_ REV__ENSG00000106780|ENST00000373930|MEGF9 1.6526216038709556 0.33848895094777925 2 [R{M(Oxidation (M))|F}]N 3 -1 3.3008 0 0 0.33595 0 0 0 562.307161477625 562.307161477625 3.300756084811813 0 0 0 0 0 0 0 0 [R{M(Oxidation (M))|F}]N 0.33595 - 6 NaN NaN 99977.8 NaN 1748 1745 3491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3496 27.707 NaN 13967 35 0 4624.1 0.261 + -1 RGELGLIMLM 10 13 574.8131896214476 1147.611826309695 2 574.812744140625 MULTI HCD FTMS 0 0 0 3491 5124.2451171875 0.5503833321725471 5 -0.07453536987304688 5 Oxidation (M) _RGELGLIM(Oxidation (M))LM_ REV__CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;REV__ENSG00000036257|ENST00000264414|CUL3;REV__nc|ENSG00000036257|Q13618-2|CUL3;REV__nc|ENSG00000036257|Q13618-3|CUL3 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86708.2 NaN 1749 1745 3491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3498 27.713 NaN 34861 35 0 4679.9 0.327 + 33263 YFIRNSPK 8 25 512.7822337231827 1023.5499145131654 2 512.7822265625 MULTI HCD FTMS 0 0 0 3497 9363.5107421875 0.41677095102904865 8 -0.12558746337890625 1 Unmodified _YFIRNSPK_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|13|1|sense 4.75600775471527 0.5349361699807423 2 S[KP] 3 -1 12.447 0 0 1.2161 0 0 693.3483753888687 0 693.3483753888687 0 6.962724883926656 0 0 0 0 0 0.5 0 S[KP] 1.2161 + + 5 NaN NaN 84257.3 NaN 1750 1746 3497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3499 27.717 NaN 53125 35 0 10011 0.261 -1 0 22 561.8458555108532 2804.1928952212656 5 562.24609375 MULTI HCD FTMS 0 0 0 3497 4909.83154296875 0.4545029869185245 -4 0.07206344604492188 2 NaN NaN 2 G 1 -1 3.0989 0 0 0.11051 0 0 2223.001746394897 521.1372164361936 2744.138962831091 0 0 0 0 0 0 0 0 0 G 0.11051 - 1 + NaN NaN 91617.2 NaN 1751 1746 3497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3501 27.723 NaN 220760 35 0 16986 0.327 + 28952 TYAEKLHRL 9 41 565.8196180926396 1129.6246832520792 2 565.8194580078125 MULTI HCD FTMS 0 0 0 3500 123661.6015625 1 0 0 1 Unmodified _TYAEKLHRL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 64.9267550582149 0.010729834900650251 2 TYAEK{I|L}HR{I|L} 9 0 + 97.942 0 0 8.6703 8.6703 91.683 0 0 0 8.04953742795611 8.04953742795611 8.04953742795611 8.04953742795611 0 2.809894379144197 2 0 0 + + TYAEK{I|L}HR{I|L};[YT]AEK{I|L}HR{I|L};{[CP]|[EA]}[YT]K{I|L}HR{I|L} 8.6703;7.9577;4.1751 +;+;- + 101 + NaN NaN 125077.5 NaN 1752 1747 3500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3502 27.728 NaN 81770 35 0 8350.4 0.261 + 33371 YGHPGYPAL 9 30 487.7404141093882 973.4662752855764 2 487.7396545410156 MULTI HCD FTMS 0 0 0 3500 21965.4296875 0.6399348041843769 5 -0.08141136169433594 2 Unmodified _YGHPGYPAL_ ENSG00000111077|ENST00000314250|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2 5.230669730166228 0.3113646817964458 2 S 1 9 5.4846 0 0 0.5634 0 0 199.05869579514518 684.3557833307249 883.41447912587 0 0 0 0 0 0 0 0 0 S 0.5634 - 2 + NaN NaN 90643.4 NaN 1753 1747 3500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3503 27.731 NaN 34098 35 0 5509 0.261 + -1 MCSYLSCCC 9 23 543.1651905647856 1084.315828196371 2 543.1653442382812 MULTI HCD FTMS 0 0 0 3500 16252.908203125 0.20459401010690584 14 -0.2266559600830078 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))SYLSCCC_ REV__ENST00000409158.5_1_2:131904864-131905029:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88028.8 NaN 1754 1747 3500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3504 27.735 NaN 54423 35 0 12225 0.261 + -1 CPFGHCCW 8 27 562.1992815738447 NaN 0 562.1990356445312 PEAK HCD FTMS 0 0 0 3500 10338.61328125 1 0 0 4 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGHC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ REV__POTEC|p.C105G|1|0.11|ENSG00000183206|chr18:14542834-14542834|A/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106750.6 NaN 1755 1747 3500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3506 27.74 NaN 119560 35 0 34732 0.327 + 32440 WCRRDPGWAR 10 29 434.88213117871703 NaN 0 434.8821716308594 PEAK HCD FTMS 0 0 0 3505 82970.890625 0.650678563034912 858 -19.291797637939453 1 Unmodified _WCRRDPGWAR_ ENST00000251642.7_1_17:40264192-40264675:-|nuORF 1.7422754331352037 0.33869314273211465 2 M 1 10 1.5938 0 0 0.18367 0 0 491.03393291231845 242.65888391666252 733.692816828981 0 0 0 0 0 0 0 0 0 M 0.18367 - 3 + NaN NaN 96500.7 NaN 1756 1748 3505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3507 27.744 NaN 46720 35 0 6350.2 0.261 + -1 QGNVQQEML 9 21 531.7478074342945 1061.4810619353889 2 531.7477416992188 MULTI HCD FTMS 0 0 0 3505 25446.21875 0.8082333639232687 -3 0.04726600646972656 2 Oxidation (M) _QGNVQQEM(Oxidation (M))L_ REV__MAP2K5|p.V89L|1|0.32|ENSG00000137764|chr15:67580766-67580766|G/T|missense_variant 3.2813086475875832 0.32614229037259 2 E{M(Oxidation (M))|F}{I|L} 3 -1 24.693 0 0 2.3263 0 0 654.3100453107437 0 654.3100453107437 0 21.593793813122062 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}{I|L} 2.3263 + + 8 NaN NaN 92981.6 NaN 1757 1748 3505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3508 27.748 NaN 52122 35 0 11096 0.261 + -1 PPCGVTSECV 10 31 524.7257602617792 1047.4369675903583 2 524.7257080078125 MULTI HCD FTMS 0 0 0 3505 9177.4794921875 0.11523273096748253 28 -0.47237205505371094 3 Carbamidomethyl (C) _PPC(Carbamidomethyl (C))GVTSECV_ REV__ENST00000561334.1_1_15:64444845-64445076:+|nuORF 3.2813086475875832 0.45793521633868084 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100392.1 NaN 1758 1748 3505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3510 27.754 NaN 96287 35 0 17720 0.327 + 28825 TVDSHEPRL 9 33 527.2699503907362 1052.5253478482723 2 527.2698364257812 MULTI HCD FTMS 0 0 0 3509 51211.08984375 0.6337604798582237 5 -0.08484458923339844 1 Unmodified _TVDSHEPRL_ ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-2|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2 16.149105407346934 0.22083165093524068 2 {[TV]|[{I|L}S]}DS 4 5 35.93 0 0 3.4137 0 0 0 647.3254099910138 647.3254099910138 28.940162615404077 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 + {[TV]|[{I|L}S]}DS 3.4137 + + 6 + NaN NaN 103127.6 NaN 1759 1749 3509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3511 27.758 NaN 99690 35 0 9359.5 0.261 + 16439 LSNGNRTLT 9 32 488.2640790888316 NaN 0 488.2531433105469 PEAK HCD FTMS 0 0 0 3509 5996.166015625 1 0 0 2 Unmodified _LSNGNRTLT_ CEACAM1|p.I383Nfs*15|1|0.24|ENSG00000079385|chr19:42519046-42519047|-/T|frameshift_variant;CEACAM5|p.T377Mfs*7|1|0.06|ENSG00000105388|chr19:41717626-41717641|CCCTCACTCTACTCAG/-|frameshift_variant;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000105388|ENST00000221992|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;ENSG00000124469|ENST00000244336|CEACAM8;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-10|CEACAM1;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-3|CEACAM1;nc|ENSG00000079385|P13688-4|CEACAM1;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000105388|P06731-2|CEACAM5 3.5964929083625545 0.27781873954207675 2 S 1 8 6.9897 0 0 0.71725 0 0 200.10250662996765 684.3565622086367 884.4590688386043 0 0 0 0 0 0 0 0 0 + S 0.71725 + + 18 + NaN NaN 96129.8 NaN 1760 1749 3509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3512 27.762 NaN 87960 35 0 23168 0.261 + 2034 DEAQSPAP 8 38 407.6826188921226 813.3506848510452 2 407.6824035644531 MULTI HCD FTMS 0 0 0 3509 37131.19921875 0.029567305825996492 -13 0.20679283142089844 3 Unmodified _DEAQSPAP_ REV__ENST00000430767.8_1_17:75212591-75212765:+|nuORF 20.453626601364224 0.4433031943603284 2 AP 2 -1 29.776 0 0 3.6609 0 0 627.2502800432312 0 627.2502800432312 0 22.81357210935475 0 0 0 0.8807196863200843 0 0 0 AP 3.6609 + + 20 + NaN NaN 96642.5 NaN 1761 1749 3509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3514 27.767 NaN 539910 35 0 56024 0.327 + 2554 DTAAQITQR 9 59 502.26203023949734 1002.5095075457947 2 502.26202392578125 MULTI HCD FTMS 0 0 0 3513 268854.5625 0.011053715189919216 29 -0.5039730072021484 1 Unmodified _DTAAQITQR_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;nc|ENSG00000204525|P10321-2|HLA-C 159.1008501968603 9.756703400391535E-09 2 {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR 9 0 + 105.82 0 0 10.555 10.555 94.454 0 0 0 15.929862658764264 14.973024840566467 14.973024840566467 9.208187539523749 0 3.305462187404089 0 2.809894379144197 0.6861818737241735 + + {[ES]|[DT]|[{I|L}C]}AAQ{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AAQ{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AA[AG]{I|L}T[AG]R;{[ES]|[DT]|[{I|L}C]}[RN]{I|L}TQ[VG];{[ES]|[DT]|[{I|L}C]}[RN]{I|L}T[AG][VG];{[ES]|[DT]|[{I|L}C]}A[RK]EQ[VG];{[ES]|[DT]|[{I|L}C]}A[RK]E[AG][VG];{[ES]|[DT]|[{I|L}C]}AA[R{I|L}][NS][VG];{[ES]|[DT]|[{I|L}C]}[RN][WR]R 10.555;9.6367;8.9523;8.0381;6.3152;5.3967;4.5906;3.6721;3.4736;3.251 +;-;-;-;-;-;-;-;-;- + 321 NaN NaN 161011 NaN 1762 1750 3513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3515 27.772 NaN 278960 35 0 21954 0.261 + 22860 QYNPHVHQL 9 60 568.2860776707372 1134.5576024082743 2 568.2857666015625 MULTI HCD FTMS 0 0 0 3513 143624.71875 1 0 0 2 Unmodified _QYNPHVHQL_ ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5 85.27202061508552 0.004649858145912257 2 [YQ]NPHVH[Q{I|L}] 9 0 + 45.089 0 0 3.9741 3.9741 85.563 0 0 0 19.894753997155647 10.034897615156865 10.034897615156865 9.208187539523749 0 1.4604093769761874 0 0 0.6382104921644451 + + [YQ]NPHVH[Q{I|L}];[YQ]GGPHVH[Q{I|L}];{[QN]|[E{I|L}]|[KN]}[RP]HPN{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[QN]|[E{I|L}]|[KN]}[RP]HPGG{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[QN]|[E{I|L}]|[KN]}[HV][PG]PN{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3.9741;3.1625;1.7206;0.90896;0.17493 +;-;-;-;- + 246 + NaN NaN 130093.1 NaN 1763 1750 3513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3516 27.775 NaN 52498 35 0 6505.6 0.261 -1 EDSSGMIGTI 10 25 513.2275468858761 NaN 0 513.2413330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _EDSSGM(Oxidation (M))IGTI_ tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1 3.5964929083625545 0.337106189561315 2 S 1 -1 10.485 0 0 1.0234 0 0 244.0615868364021 690.3239840143186 934.3855708507208 0 0 0 0 0 0 0 0.5 0 S 1.0234 + + 1 + NaN NaN 94107.3 NaN 1764 1750 3513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3517 27.779 NaN 24556 35 0 4593.6 0.261 + 13957 KYRLVEEKN 9 19 589.8300711224944 1177.6455893117886 2 589.8297729492188 MULTI HCD FTMS 0 0 0 3513 15622.484375 0.01483965721283697 51 -0.8484706878662109 4 Unmodified _KYRLVEEKN_ REV__ENSG00000129518|ENST00000250454|EAPP 1.4819007175156935 0.3397831423917744 2 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.465711381029 883.465711381029 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.7806 + + 3 + NaN NaN 83996.8 NaN 1765 1750 3513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3518 27.782 NaN 22493 35 0 5286.2 0.261 + 25901 SNNDQDNKRD 10 11 603.2605728121036 NaN 0 603.2612915039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _SNNDQDNKRD_ REV__ENSG00000129003|ENST00000644861|VPS13C;REV__nc|ENSG00000129003|Q709C8-2|VPS13C;REV__nc|ENSG00000129003|Q709C8-3|VPS13C;REV__nc|ENSG00000129003|Q709C8-4|VPS13C;REV__VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89024.3 NaN 1766 1750 3513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3520 27.788 NaN 121540 35 0 26402 0.326 + 8271 GTSSVIVSR 9 37 453.25617809428564 904.4978032553713 2 453.2559814453125 MULTI HCD FTMS 0 0 0 3519 62237.5390625 0.7055542255864389 -1 0.020296096801757812 1 Unmodified _GTSSVIVSR_ ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11 28.494509381512117 0.11816142465008336 2 {[SA]|[TG]}{[CA]|SS}V{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 37.381 0 0 4.1328 4.1328 89.856 0 0 0 30.391362274856924 3.9254497678533156 3.9254497678533156 37.38106231821711 0 1.4247425010840047 0 0 0 + + {[SA]|[TG]}{[CA]|SS}V{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 4.1328 + + 31 + NaN NaN 110698.2 NaN 1767 1751 3519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3521 27.792 NaN 85275 35 0 15185 0.261 -1 ASNVTNKTD 9 33 496.2382443360893 990.4619357389786 2 496.238037109375 MULTI HCD FTMS 0 0 0 3519 32428.017578125 0.5613656222871058 4 -0.06106376647949219 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ASNVTNKTD_ ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC 11.494710602746466 0.2610445893512368 2 TD 2 -1 25.969 0 0 2.6219 0 0 756.3727894513687 0 756.3727894513687 0 21.365006360318688 0 0 0 0.5 0 0 0 TD 2.6219 + + 8 NaN NaN 87376.4 NaN 1768 1751 3519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3522 27.796 NaN 40548 35 0 5368.5 0.261 -1 FCFPGHRGD 9 28 546.7399700602083 NaN 0 546.7518920898438 PEAK HCD FTMS 0 0 0 3519 3493.05322265625 0.4309035081621882 -3 0.047565460205078125 3 Carbamidomethyl (C) _FC(Carbamidomethyl (C))FPGHRGD_ ENST00000436521.1_3_6:35410881-35414311:+|nuORF 2.302733041254933 0.2840881193086663 2 QHH 3 -1 13.812 0 0 1.2655 0 0 218.10578132959773 468.1671236627563 686.272904992354 0 0 0 0 0 0 0 0 0 QHH 1.2655 - 13 + NaN NaN 95770.3 NaN 1769 1751 3519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3523 27.799 NaN 76073 35 0 12927 0.262 + 28070 TGTEAHVAE 9 38 457.71435141608134 913.4141498989627 2 457.7138977050781 MULTI HCD FTMS 0 0 0 3519 24343.1328125 0.6093381483218674 -3 0.047565460205078125 4 Unmodified _TGTEAHVAE_ ENSG00000170677|ENST00000397942|SOCS6 10.823927491677226 0.26684000660059787 2 V{[CP]|[EA]} 3 6 22.319 0 0 2.4435 0 0 596.2572417952503 0 596.2572417952503 0 22.319393642848482 0 0 0 1 0 0.4247425010840047 0 + V{[CP]|[EA]} 2.4435 + + 8 + NaN NaN 89134.6 NaN 1770 1751 3519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3525 27.805 NaN 184070 35 0 31263 0.327 + 1914 DAAKDSILR 9 43 494.7749555404801 987.5353581477602 2 494.7751159667969 MULTI HCD FTMS 0 0 0 3524 85513.140625 0.4846149112185014 -5 0.08141136169433594 1 Unmodified _DAAKDSILR_ ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F 37.07464296494664 0.07877380486334713 2 DAAK 4 5 56.983 0 0 5.7702 0 0 0 599.3153256121908 599.3153256121908 32.99803764475705 0 0 0 0 0.805462187404089 1.6989700043360187 0 0 + DAAK 5.7702 + + 37 + NaN NaN 111701.9 NaN 1771 1752 3524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3526 27.809 NaN 137540 35 0 10247 0.261 -1 CLSMTEHALG 10 44 559.7519485654861 1117.4893441977722 2 559.7520751953125 MULTI HCD FTMS 0 0 0 3524 78605.515625 0.8594135559798073 -2 0.037322998046875 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSMTEHALG_ ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENST00000556069.5_1_14:55251199-55255659:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A 19.256988751693697 0.33098864134661865 2 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L} 9 -1 + 67.56 0 0 6.0457 6.0457 88.628 0 0 0 5.6424927368725974 62.95548148589354 5.6424927368725974 9.208187539523749 0 2.3494850021680094 0 0.3252574989159953 0 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[AG]VEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEH[AG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[AG]VEH[AG]{I|L} 6.0457;5.2217;5.2217;4.4015 -;-;-;- 110 NaN NaN 101950.7 NaN 1772 1752 3524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3527 27.813 NaN 87885 35 0 20788 0.261 + 9505 HPYQPDPKM 9 20 556.7631686793784 1111.5117844255567 2 556.7631225585938 MULTI HCD FTMS 0 0 0 3524 41586.859375 0.6539263796935729 5 -0.07442855834960938 3 Unmodified _HPYQPDPKM_ ENSG00000141582|ENST00000269397|CBX4 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 104873.7 NaN 1773 1752 3524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3528 27.816 NaN 25490 35 0 4623.6 0.261 + 4201 EVAPPEYHR 9 15 549.2723754126291 1096.5301978920581 2 549.2726440429688 MULTI HCD FTMS 0 0 0 3524 12008.509765625 0.29606577055310523 8 -0.12168312072753906 4 Unmodified _EVAPPEYHR_ ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 3.2813086475875832 0.32614229037259 2 [W{I|L}]P 3 8 10.458 0 0 0.9537 0 0 0 697.3049410455686 697.3049410455686 10.45757490560675 0 0 0 0 0 0 0 0 [W{I|L}]P 0.9537 - 1 + NaN NaN 83068.3 NaN 1774 1752 3524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3529 27.819 NaN 42324 35 0 3613.7 0.261 + 20417 PAASDARSFPS 11 31 553.2672679363698 1104.5199829395394 2 553.2662963867188 MULTI HCD FTMS 0 0 0 3524 23656.76953125 0.5983951584017786 27 -0.46665000915527344 5 Unmodified _PAASDARSFPS_ ENSG00000227345|ENST00000616448|PARG;PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85200.8 NaN 1775 1752 3524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3530 27.823 NaN 41446 35 0 10419 0.262 + 10142 IFPHCGRK 8 26 479.25830545460093 NaN 0 479.2581481933594 PEAK HCD FTMS 0 0 0 3524 4034.01171875 0.7669658100218439 10 -0.15884971618652344 6 Unmodified _IFPHCGRK_ ENSG00000255561|ENST00000260257|FDXACB1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92359.8 NaN 1776 1752 3524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3532 27.828 NaN 69651 35 0 9630.9 0.327 + 25958 SPDENENEV 9 26 516.70948184297 1031.40441075274 2 516.70947265625 MULTI HCD FTMS 0 0 0 3531 23722.810546875 0.04655685652234549 31 -0.4955177307128906 1 Unmodified _SPDENENEV_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85346.2 NaN 1777 1753 3531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3533 27.833 NaN 206250 35 0 98900 0.262 + 10401 INPGCFPKQSI 11 45 401.87788597622097 NaN 0 401.87774658203125 PEAK HCD FTMS 0 0 0 3531 8032.2451171875 0.6369389181247694 20 -0.3142547607421875 2 Unmodified _INPGCFPKQSI_ REV__ENSG00000258453|ENST00000556246|OR11H2;REV__nc|ENSG00000258453|Q8NH07|OR11H2 1.3295316138638542 0.3383486451652214 2 D 1 -1 5.4846 0 0 0.68408 0 0 199.4026306790559 484.28855310611567 683.6911837851716 0 0 0 0 0 0 0 0 0 D 0.68408 - 2 + NaN NaN 116348.2 NaN 1778 1753 3531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3535 27.838 NaN 24650 35 0 4833.7 0.326 + -1 MPFMLEMR 8 20 543.7425917613572 NaN 0 543.7424926757812 PEAK HCD FTMS 0 0 0 3534 4356.81298828125 0.8397791911581594 1 -0.010173797607421875 1 2 Oxidation (M) _M(Oxidation (M))PFM(Oxidation (M))LEMR_ REV__KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88810.3 NaN 1779 1754 3534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3536 27.843 NaN 34932 35 0 7738.4 0.261 + 30357 VLHGILLKK 9 17 510.85061778885165 NaN 0 510.7129821777344 PEAK HCD FTMS 0 0 0 3534 1402.9119873046875 0.38123541630412333 -1 0.010251998901367188 2 Unmodified _VLHGILLKK_ tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99926.7 NaN 1780 1754 3534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3538 27.849 NaN 81721 35 0 7590.5 0.327 + 35071 YTSVRVHAPT 10 29 565.8004372587513 NaN 0 565.8193969726562 PEAK HCD FTMS 0 0 0 3537 3580.631103515625 1 0 0 1 Unmodified _YTSVRVHAPT_ REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1 8.745405648335112 0.33269943387702366 2 AEK{I|L}H 5 -1 26.454 0 0 2.3419 0 0 264.07426846406446 284.17209802799067 548.2463664920551 0 0 0 0 0 0 0 0 0 AEK{I|L}H 2.3419 - 34 + NaN NaN 88652.7 NaN 1781 1755 3537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3539 27.853 NaN 20026 35 0 6030.4 0.261 + 35077 YTVEEEESP 9 12 541.7305313952824 1081.4465098573646 2 542.7314453125 MULTI HCD FTMS 0 0 0 3537 5444.896484375 0.5336862031863003 -9 0.13576126098632812 2 Unmodified _YTVEEEESP_ REV__ENSG00000178997|ENST00000458580|EXD1;REV__nc|ENSG00000178997|Q8NHP7|EXD1 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96531.9 NaN 1782 1755 3537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3540 27.857 NaN 16664 35 0 5275.5 0.261 -1 NQDFTFKME 9 16 588.2552974230929 1174.4960419129857 2 588.255859375 MULTI HCD FTMS 0 0 0 3537 4932.53466796875 0.38656144968096473 -4 0.06106376647949219 3 Oxidation (M) _NQDFTFKM(Oxidation (M))E_ ENSG00000156384|ENST00000369727|SFR1;ENST00000463224.5_1_10:105881848-105882847:+|nuORF;nc|ENSG00000156384|Q86XK3-2|SFR1 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92572.5 NaN 1783 1755 3537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3541 27.86 NaN 13320 35 0 4751.4 0.261 -1 0 11 619.9586791992188 NaN 0 619.9586791992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 Q 1 -1 5.4846 0 0 0.44305 0 0 914.8865639630875 191.93776880435783 1106.8243327674454 0 0 0 0 0 0 0 0 0 Q 0.44305 - 1 + NaN NaN 87250.8 NaN 1784 1755 3537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3543 27.865 NaN 77924 35 0 19404 0.326 -1 VCCSSPCP 8 31 426.65585149466614 851.2971500561323 2 426.655517578125 MULTI HCD FTMS 0 0 0 3542 33407.97265625 0.6556264869561818 -6 0.09814071655273438 1 Carbamidomethyl (C) _VC(Carbamidomethyl (C))CSSPCP_ ENST00000393965.7_1_2:74701806-74702394:-|nuORF 2.577480529830294 0.5381683276125971 2 Q[C(Carbamidomethyl (C))H] 3 -1 5.9421 0 0 0.69801 0 0 408.13365370918126 0 408.13365370918126 0 2.8431811792050627 0 0 0 0 0 0 0 Q[C(Carbamidomethyl (C))H] 0.69801 - 5 NaN NaN 93231 NaN 1785 1756 3542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3544 27.87 NaN 26434 35 0 4267.8 0.261 + 19536 NSHMDDFHP 9 21 550.2174107033512 NaN 0 550.2168579101562 PEAK HCD FTMS 0 0 0 3542 6975.99609375 0.3068538168729521 -23 0.35140037536621094 2 Unmodified _NSHMDDFHP_ REV__ENSG00000175216|ENST00000529230|CKAP5;REV__nc|ENSG00000175216|Q14008-2|CKAP5;REV__nc|ENSG00000175216|Q14008-3|CKAP5 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97854.8 NaN 1786 1756 3542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3545 27.874 NaN 47598 35 0 9917.8 0.261 -1 0 19 561.8458555108532 2804.1928952212656 5 562.2462158203125 MULTI HCD FTMS 0 0 0 3542 3391.0341796875 0.313907951815158 6 -0.09803199768066406 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87640.2 NaN 1787 1756 3542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3547 27.879 NaN 800710 35 0 221560 0.327 + 9370 HPTDDTTTL 9 34 500.73280223092934 999.4510515286587 2 500.7327575683594 MULTI HCD FTMS 0 0 0 3546 454330.59375 0.29574256295457063 -7 0.11175155639648438 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 39.957323273324995 0.06554068735427583 2 TTT{I|L} 4 5 48.175 0 0 4.8202 0 0 565.213182517775 0 565.213182517775 0 36.938200260161125 0 0 0 1 0 0.9247425010840047 0 + TTT{I|L} 4.8202 + + 35 NaN NaN 209439.8 NaN 1788 1757 3546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3548 27.883 NaN 44870 35 0 5957.2 0.261 + 8635 HELQFEYP 8 29 531.7478074342945 1061.4810619353889 2 531.7479248046875 MULTI HCD FTMS 0 0 0 3546 19616.5234375 0.6230681612123714 6 -0.09786224365234375 2 Unmodified _HELQFEYP_ ENSG00000158477|ENST00000289429|CD1A 1.844237919475145 0.5392561982033289 2 E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 5 8.9524 0 0 0.84339 0 0 654.3077870099625 0 654.3077870099625 0 6.188215083997941 0 0 0 0 0 0 0 + E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 0.84339 + + 4 NaN NaN 82387.1 NaN 1789 1757 3546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3549 27.887 NaN 79171 35 0 11251 0.261 -1 FMCGHQGCG 9 33 527.1884109856283 1052.3622690380564 2 527.1884155273438 MULTI HCD FTMS 0 0 0 3546 17335.5234375 0.196164212905226 -8 0.1254100799560547 3 2 Carbamidomethyl (C) _FMC(Carbamidomethyl (C))GHQGC(Carbamidomethyl (C))G_ ENST00000573951.1_1_16:3315704-3317325:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89510.5 NaN 1790 1757 3546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3550 27.89 NaN 35275 35 0 5046.5 0.261 + -1 FDSLSMWF 8 23 524.7257602617792 1047.4369675903583 2 524.7257690429688 MULTI HCD FTMS 0 0 0 3546 8214.8291015625 0.10314566135615157 37 -0.6124839782714844 4 Oxidation (M) _FDSLSM(Oxidation (M))WF_ REV__ENSG00000203697|ENST00000366872|CAPN8 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89122.9 NaN 1791 1757 3546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3551 27.894 NaN 48448 35 0 7036.1 0.261 -1 QPDEEPMDM 9 23 562.1992815738447 NaN 0 562.2005004882812 PEAK HCD FTMS 0 0 0 3546 9810.1279296875 0.9488823754999178 10 -0.1716747283935547 5 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91652.4 NaN 1792 1757 3546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3553 27.899 NaN 981660 35 0 395000 0.327 + 3023 EADPGSAAP 9 44 407.6826188921226 813.3506848510452 2 407.68255615234375 MULTI HCD FTMS 0 0 0 3552 1053071.375 0.8385531320384817 -4 0.06077384948730469 1 Unmodified _EADPGSAAP_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 74.42276476219924 0.007657080072768255 2 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 6 5 49.13 0 0 6.0404 0 0 182.06935317207189 0 182.06935317207189 0 26.46591250700361 0 0 0 1.4247425010840047 0 1.274227503252014 0 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 6.0404 - 106 NaN NaN 221033.5 NaN 1793 1758 3552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3554 27.904 NaN 38585 35 0 9698.3 0.261 + -1 VCENIDVC 8 17 476.1984312057 NaN 0 476.19854736328125 PEAK HCD FTMS 0 0 0 3552 11251.30859375 0.47461570897445005 31 -0.4999275207519531 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))ENIDVC_ REV__ENSG00000163520|ENST00000404922|FBLN2;REV__ENSG00000166147|ENST00000316623|FBN1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85571.8 NaN 1794 1758 3552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3556 27.909 NaN 71376 35 0 6288.2 0.326 + 22589 QTFENQVNR 9 38 568.2773173831432 1134.5400818330863 2 568.286376953125 MULTI HCD FTMS 0 0 0 3555 11177.591796875 0.5184995628982965 -2 0.030458450317382812 1 Unmodified _QTFENQVNR_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 16.149105407346934 0.22083165093524068 2 [QT]{M(Oxidation (M))|F}ENQVNR 9 0 + 43.822 0 0 3.8626 3.8626 85.433 0 0 0 34.6277502416482 16.478174818886373 16.478174818886373 9.208187539523749 0 0 0 0 0 + + [QT]{M(Oxidation (M))|F}ENQVNR;[QT]{M(Oxidation (M))|F}EGGQVNR;[QT]{M(Oxidation (M))|F}EN[AG]VNR;[QT]{M(Oxidation (M))|F}ENQVGGR;[Y{I|L}][DN]NQVNR;[QT]{M(Oxidation (M))|F}EN[AG]VGGR;[QT]{M(Oxidation (M))|F}EGG[AG]VNR;[QT]{M(Oxidation (M))|F}EGGQVGGR;[Y{I|L}][DN]NQVGGR;[Y{I|L}][DN]N[AG]VNR 3.8626;3.051;3.051;3.051;2.5853;2.2432;2.2432;2.2432;1.7737;1.7737 +;-;-;-;-;-;-;-;-;- + 133 + NaN NaN 108392.8 NaN 1795 1759 3555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3557 27.914 NaN 55091 35 0 7034.4 0.261 + 14370 LEEPKKMT 8 31 488.2625989103629 NaN 0 488.2531433105469 PEAK HCD FTMS 0 0 0 3555 1970.531494140625 0.9656173436725918 1 -0.016796112060546875 2 Unmodified _LEEPKKMT_ ENSG00000164609|ENST00000297151|SLU7;ENST00000521190.5_1_5:159840839-159846079:-|nuORF 1.844237919475145 0.38822285293237185 2 P 1 7 3.0989 0 0 0.318 0 0 717.5742873209227 156.86196314029533 874.436250461218 0 0 0 0 0 0 0 0 0 + P 0.318 + + 4 + NaN NaN 101286.6 NaN 1796 1759 3555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3558 27.917 NaN 18557 35 0 3131.3 0.261 + 12448 KQKEQQVYK 9 17 589.8300711224944 1177.6455893117886 2 589.8302612304688 MULTI HCD FTMS 0 0 0 3555 18519.0625 0.017591090687399304 60 -0.9857940673828125 3 Unmodified _KQKEQQVYK_ REV__MAP3K19|p.N874K|1|0.35|ENSG00000176601|chr2:134986250-134986250|A/T|missense_variant 1.6526216038709556 0.33848895094777925 2 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.4633272760374 883.4633272760374 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.7806 - 1 + NaN NaN 86561.6 NaN 1797 1759 3555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3559 27.921 NaN 75922 35 0 9994.4 0.261 + -1 YLMAQPTW 8 36 513.2411654924657 1024.4677780517313 2 513.2413330078125 MULTI HCD FTMS 0 0 0 3555 10958.8837890625 0.3167985571785146 8 -0.14121627807617188 4 Oxidation (M) _YLM(Oxidation (M))AQPTW_ REV__ENSG00000134548|ENST00000256969|SPX 2.8892196856762586 0.5377058178582064 2 A 1 -1 5.4846 0 0 0.53536 0 0 530.254259840597 420.1518648736938 950.4061247142909 0 0 0 0 0 0 0 0 0 A 0.53536 + + 1 + NaN NaN 97946.4 NaN 1798 1759 3555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3561 27.926 NaN 198960 35 0 86382 0.327 -1 0 35 418.6736019559415 835.332650978683 2 418.67352294921875 MULTI HCD FTMS 0 0 0 3560 161906.265625 0.9487573998629328 -2 0.02704620361328125 1 NaN NaN 2 EP 2 -1 19.464 0 0 2.3301 0 0 591.2281971662125 0 591.2281971662125 0 12.474250108400469 0 0 0 0 0 0.5 0 EP 2.3301 - 12 NaN NaN 114587 NaN 1799 1760 3560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3562 27.931 NaN 29525 35 0 4038.1 0.261 -1 HPHCGCVR 8 18 511.72410713188987 1021.4336613305798 2 511.7240295410156 MULTI HCD FTMS 0 0 0 3560 22319.21484375 0.8430695141606199 -3 0.04725456237792969 2 2 Carbamidomethyl (C) _HPHC(Carbamidomethyl (C))GC(Carbamidomethyl (C))VR_ ENST00000484122.5_1_17:12896137-12899859:-|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 106228.8 NaN 1800 1760 3560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3563 27.934 NaN 28946 35 0 4374 0.261 + -1 MFGHCLRGD 9 23 546.7399700602083 NaN 0 546.751708984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _MFGHC(Carbamidomethyl (C))LRGD_ REV__ENST00000274853.7_1_6:30654418-30654859:-|nuORF 0.6014990680409731 0.29233206172879045 2 {I|L} 1 -1 6.9897 0 0 0.6404 0 0 128.96021248194148 846.4009344213837 975.3611469033251 0 0 0 0 0 0 0 0 0 {I|L} 0.6404 + + 1 + NaN NaN 96027 NaN 1801 1760 3560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3564 27.938 NaN 26909 35 0 5342.1 0.261 -1 0 15 469.3294260761259 936.6442992190518 2 469.3282470703125 MULTI HCD FTMS 0 0 0 3560 10252.275390625 0.5179731732077842 -17 0.2683258056640625 4 NaN NaN 2 R 1 -1 4.6041 0 0 0.49155 0 0 312.73311865440184 464.7732027643188 777.5063214187206 0 0 0 0 0 0 0 0 0 R 0.49155 - 1 + NaN NaN 89936.5 NaN 1802 1760 3560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3565 27.941 NaN 14649 35 0 5554.7 0.261 -1 WRWMMLVFS 9 13 644.3036518561685 NaN 0 644.3048095703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _WRWM(Oxidation (M))M(Oxidation (M))LVFS_ ENSG00000115474|ENST00000233826|KCNJ13;KCNJ13|p.C234Dfs*9|1|0.08|ENSG00000115474|chr2:232768575-232768576|-/CC|frameshift_variant;nc|ENSG00000115474|O60928-2|KCNJ13 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112200.4 NaN 1803 1760 3560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3566 27.944 NaN 45016 35 0 9917.1 0.261 -1 WHMEMCAQ 8 21 562.7006959330644 1123.3868389329286 2 562.7012939453125 MULTI HCD FTMS 0 0 0 3560 4181.3779296875 1 0 0 6 Carbamidomethyl (C),2 Oxidation (M) _WHM(Oxidation (M))EM(Oxidation (M))C(Carbamidomethyl (C))AQ_ ENST00000369405.7_1_10:114205145-114205280:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93469.5 NaN 1804 1760 3560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3568 27.95 NaN 168070 35 0 29605 0.327 + 1915 DAAKDSILR 9 49 494.7749555404801 987.5353581477602 2 494.77496337890625 MULTI HCD FTMS 0 0 0 3567 98333.328125 0.5572687043280565 4 -0.06724739074707031 1 Unmodified _DAAKDSILR_ ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F 33.4449034751529 0.0954363425218424 2 DAAK 4 5 52.563 0 0 5.3226 0 0 0 599.3171460292521 599.3171460292521 29.731975075880328 0 0 0 0 0.7614393726401688 1.3010299956639813 0 0 + DAAK 5.3226 + + 58 + NaN NaN 122137.9 NaN 1805 1761 3567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3569 27.954 NaN 92372 35 0 8071.6 0.261 -1 AMNMLHELQ 9 34 559.7519485654861 1117.4893441977722 2 559.7520751953125 MULTI HCD FTMS 0 0 0 3567 65572.484375 0.716920199849514 7 -0.121002197265625 2 2 Oxidation (M) _AM(Oxidation (M))NM(Oxidation (M))LHELQ_ nc|ENSG00000226807|Q6ZUA9|MROH5 18.1463463914782 0.20357593197100715 2 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L} 9 -1 + 73.026 0 0 6.5348 6.5348 89.478 0 0 0 5.585456211725202 62.05645316481359 5.585456211725202 9.208187539523749 0 2.3182503180159344 1.6989700043360187 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEHQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}QVEH[AG]{I|L} 6.5348;5.7108 -;- 61 NaN NaN 106902.8 NaN 1806 1761 3567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3570 27.958 NaN 46761 35 0 11210 0.261 + -1 LCHTEPIWG 9 25 556.7631686793784 1111.5117844255567 2 556.7628784179688 MULTI HCD FTMS 0 0 0 3567 6784.27001953125 0.10667824402731099 14 -0.2393627166748047 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))HTEPIWG_ REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF 4.75600775471527 0.31496297302216103 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92812.6 NaN 1807 1761 3567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3572 27.963 NaN 47643 35 0 4103.7 0.327 + 22590 QTFENQVNR 9 29 568.2773173831432 1134.5400818330863 2 568.276123046875 MULTI HCD FTMS 0 0 0 3571 8803.4140625 0.40836760067540795 1 -0.013441085815429688 1 Unmodified _QTFENQVNR_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 8.745405648335112 0.2847203663274469 2 E{M(Oxidation (M))|F}[NP] 4 7 13.188 0 0 1.1624 0 0 629.3243885724625 0 629.3243885724625 0 2.730012720637374 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}[NP] 1.1624 - 32 NaN NaN 96541.4 NaN 1808 1762 3571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3573 27.968 NaN 43869 35 0 4743.4 0.261 + -1 PHYLMCLR 8 27 553.2672679363698 1104.5199829395394 2 553.2674560546875 MULTI HCD FTMS 0 0 0 3571 13303.41015625 0.3365081701969987 37 -0.6187820434570312 2 Carbamidomethyl (C),Oxidation (M) _PHYLM(Oxidation (M))C(Carbamidomethyl (C))LR_ REV__ENSG00000007923|ENST00000377577|DNAJC11;REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF;REV__ENST00000465911.1_1_1:6730943-6761860:-|nuORF;REV__ENST00000473993.5_1_1:6727844-6761860:-|nuORF;REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF;REV__nc|ENSG00000007923|Q9NVH1-2|DNAJC11;REV__nc|ENSG00000007923|Q9NVH1-3|DNAJC11;REV__NOL9-DNAJC11|1|fusion 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85859.2 NaN 1809 1762 3571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3574 27.971 NaN 81635 35 0 12269 0.261 -1 PHSGMMPPI 9 38 491.72736285755263 981.4401727819053 2 491.7276306152344 MULTI HCD FTMS 0 0 0 3571 14622.455078125 0.7876614629318057 -1 0.013605117797851562 3 Oxidation (M) _PHSGMM(Oxidation (M))PPI_ ENSG00000130749|ENST00000253048|ZC3H4 4.75600775471527 0.31496297302216103 2 G 1 -1 0.088644 0 0 0.009032 0 0 556.2667851860053 365.12099341856856 921.3877786045739 0 0 0 0 0 0 0 0 0 G 0.009032 + + 2 + NaN NaN 115718.9 NaN 1810 1762 3571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3576 27.977 NaN 57512 35 0 12813 0.327 + 7916 GAGPGADLGAE 11 28 457.71435141608134 913.4141498989627 2 457.7142639160156 MULTI HCD FTMS 0 0 0 3575 25330.111328125 0.6340434180082566 9 -0.14879989624023438 1 Unmodified _GAGPGADLGAE_ ENSG00000130812|ENST00000253109|ANGPTL6 5.296884461304476 0.39569033063702824 2 SK 2 11 10.969 0 0 1.2009 0 0 300.1031890608752 395.1622408502563 695.2654299111315 0 0 0 0 0 0 0 0 0 SK 1.2009 - 6 + NaN NaN 87067.2 NaN 1811 1763 3575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3577 27.981 NaN 35250 35 0 3676.4 0.261 + 28953 TYAEKLHRL 9 26 565.8196180926396 1129.6246832520792 2 565.819580078125 MULTI HCD FTMS 0 0 0 3575 11952.728515625 0.09665675007115247 16 -0.2943592071533203 2 Unmodified _TYAEKLHRL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 6.2057823575117 0.30397260197431997 2 {I|L}K{[CP]|[EA]}[{M(Oxidation (M))|F}V] 6 7 11.171 0 0 0.9889 0 0 424.2555103986344 0 424.2555103986344 0 11.170912423450405 0 0 0 0 0 0 0 {I|L}K{[CP]|[EA]}[{M(Oxidation (M))|F}V] 0.9889 - 5 NaN NaN 87303.2 NaN 1812 1763 3575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3578 27.985 NaN 33224 35 0 5940.5 0.261 + -1 KIIKLCMW 8 19 546.309187723616 1090.603822514032 2 546.810791015625 MULTI HCD FTMS 0 0 0 3575 15250.580078125 1 0 0 3 Carbamidomethyl (C) _KIIKLC(Carbamidomethyl (C))MW_ REV__ENSG00000133115|ENST00000379631|STOML3;REV__nc|ENSG00000133115|Q8TAV4-2|STOML3 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94204.7 NaN 1813 1763 3575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3579 27.988 NaN 34334 35 0 5929 0.261 -1 QPDEEPMDM 9 19 562.1992815738447 NaN 0 562.1984252929688 PEAK HCD FTMS 0 0 0 3575 8136.48828125 0.7869999641060421 15 -0.2747383117675781 4 2 Oxidation (M) _QPDEEPM(Oxidation (M))DM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 13.90604991867851 0.22786006501039813 2 G 1 -1 8.8515 0 0 0.78864 0 0 541.1915796498394 521.1374605768186 1062.329040226658 0 0 0 0 0 0.4247425010840047 0 0 0 G 0.78864 - 1 + NaN NaN 91438.2 NaN 1814 1763 3575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3580 27.991 NaN 24460 35 0 4429.6 0.261 + 18431 MPVCHTGKRVI 11 16 620.8361188871052 1239.6576848410102 2 620.8361206054688 MULTI HCD FTMS 0 0 0 3575 9426.1728515625 0.4444469871641565 -4 0.06740379333496094 5 Unmodified _MPVCHTGKRVI_ ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;nc|ENSG00000163803|Q6P1J6-4|PLB1 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85588 NaN 1815 1763 3575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3581 27.995 NaN 34382 35 0 10828 0.261 + -1 YLQTYMTM 8 26 541.7305313952824 1081.4465098573646 2 542.73095703125 MULTI HCD FTMS 0 0 0 3575 7928.25244140625 0.7770944691967456 -1 0.013441085815429688 6 2 Oxidation (M) _YLQTYM(Oxidation (M))TM(Oxidation (M))_ REV__ENSG00000023041|ENST00000369405|ZDHHC6;REV__nc|ENSG00000023041|Q9H6R6-2|ZDHHC6 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3504 0 0 916.4004721149803 0 916.4004721149803 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3504 + + 3 + NaN NaN 90822.4 NaN 1816 1763 3575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3583 28 NaN 139850 35 0 24933 0.327 + -1 DGGGSTDMP 9 42 426.65585149466614 851.2971500561323 2 426.6557312011719 MULTI HCD FTMS 0 0 0 3582 46325.37109375 0.9091285071276156 2 -0.03694915771484375 1 Oxidation (M) _DGGGSTDM(Oxidation (M))P_ REV__DNAH5|p.K4342M|1|0.15|ENSG00000039139|chr5:13714505-13714505|T/A|missense_variant 11.640296217721598 0.25978676193971967 2 [PS]T{[{M(Oxidation (M))|F}D]|MM}TT 7 -1 17.508 0 0 2.0567 0 0 0 98.97755533757825 98.97755533757825 10.518791285111817 0 0 0 0 0 0 0.805462187404089 0 [PS]T{[{M(Oxidation (M))|F}D]|MM}TT 2.0567 - 27 NaN NaN 100522.8 NaN 1817 1764 3582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3584 28.005 NaN 92407 35 0 24422 0.261 + 11716 KAYALFPFCW 10 30 415.8755203824368 1244.6047317475104 3 415.8753356933594 MULTI HCD FTMS 0 0 0 3582 12323.58984375 0.4957827634644302 9 -0.14215850830078125 2 Unmodified _KAYALFPFCW_ nc|ENSG00000109854|Q9BUP3-2|HTATIP2 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99564 NaN 1818 1764 3582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3585 28.008 NaN 44916 35 0 5526.9 0.261 + 26572 SVSEVHPSRL 10 18 555.7986892967572 1109.5828256603143 2 555.7985229492188 MULTI HCD FTMS 0 0 0 3582 13609.46875 0.3881264860301607 -6 0.10107040405273438 3 Unmodified _SVSEVHPSRL_ ENSG00000115415|ENST00000361099|STAT1 6.630372943996041 0.44020808660041416 2 W{[ES]|[DT]|[{I|L}C]}VH 5 6 26.466 0 0 2.3852 0 0 0 468.25840173892817 468.25840173892817 26.46591250700361 0 0 0 0 0.4247425010840047 0 0 0 W{[ES]|[DT]|[{I|L}C]}VH 2.3852 - 6 + NaN NaN 83632 NaN 1819 1764 3582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3586 28.012 NaN 71385 35 0 8514.3 0.261 + 9050 HPESGEVTV 9 31 477.73013626835854 953.4457196035171 2 477.7303466796875 MULTI HCD FTMS 0 0 0 3582 19632.974609375 0.364296980042112 -8 0.1348896026611328 4 Unmodified _HPESGEVTV_ ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant 6.723162845929126 0.3000504726104499 2 VTV 3 6 31.198 0 0 3.2721 0 0 636.2492542951187 0 636.2492542951187 0 18.433677739595034 0 0 0 0.5 0 0 0 + VTV 3.2721 + + 6 NaN NaN 111124.9 NaN 1820 1764 3582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3588 28.017 NaN 2318500 35 0 649580 0.327 + 9371 HPTDDTTTL 9 50 500.73280223092934 999.4510515286587 2 500.7330322265625 MULTI HCD FTMS 0 0 0 3587 1490603.25 0.9702952686166374 1 -0.02016448974609375 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 81.61307344734483 0.005330412723537057 2 TTT{I|L} 4 5 55.477 0 0 5.5508 0 0 565.2121449201187 0 565.2121449201187 0 35.8116097541118 0 0 0 1.305462187404089 0 1.3494850021680094 0 + TTT{I|L} 5.5508 + + 159 NaN NaN 449100.1 NaN 1821 1765 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3589 28.021 NaN 264070 35 0 29090 0.261 + 12384 KPESNEQVL 9 41 522.2718692855757 1042.5291856379513 2 522.2716674804688 MULTI HCD FTMS 0 0 0 3587 131034.3671875 0.5683684715765595 -4 0.06724739074707031 2 Unmodified _KPESNEQVL_ ENSG00000165832|ENST00000298746|TRUB1 23.789781309258295 0.1548179064208189 2 DQV{I|L} 4 6 45.433 0 0 4.358 0 0 569.2949085919937 0 569.2949085919937 0 30.48455006504028 0 0 0 0.9247425010840047 0 0 0.4247425010840047 DQV{I|L} 4.358 - 19 NaN NaN 146723.1 NaN 1822 1765 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3590 28.025 NaN 152640 35 0 31349 0.261 + -1 QFMNCCHN 8 36 527.1884109856283 1052.3622690380564 2 527.1882934570312 MULTI HCD FTMS 0 0 0 3587 88372.5078125 1 0 0 3 Carbamidomethyl (C) _QFMNCC(Carbamidomethyl (C))HN_ REV__nc|ENSG00000149294|P13591-5|NCAM1 0.6903765706972694 0.5409681170271811 2 Q{I|L} 2 -1 14.693 0 0 1.3962 0 0 793.2184711787785 0 793.2184711787785 0 14.69273760456403 0 0 0 0 0 0 0 Q{I|L} 1.3962 - 1 NaN NaN 108755.1 NaN 1823 1765 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3591 28.028 NaN 121560 35 0 13473 0.261 + 26216 SPTDWTWP 8 42 495.22122025617375 NaN 0 495.23040771484375 PEAK HCD FTMS 0 0 0 3587 6932.58740234375 0.4344246113400671 17 -0.28415679931640625 4 Unmodified _SPTDWTWP_ REV__ENSG00000179954|ENST00000389623|SSC5D 13.50788311687929 0.38822285293237185 2 PSDAD 5 -1 24.24 0 0 2.4524 0 0 87.0148984020038 413.2143953912719 500.2292937932757 0 0 0 0 0 0 0 0.3807196863200844 0 PSDAD 2.4524 - 27 + NaN NaN 98935.8 NaN 1824 1765 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3592 28.032 NaN 99612 35 0 28668 0.262 + 34027 YMQIINFFK 9 48 401.87788597622097 NaN 0 401.87799072265625 PEAK HCD FTMS 0 0 0 3587 5054.42529296875 0.40080452362654606 32 -0.5284137725830078 5 Unmodified _YMQIINFFK_ ENSG00000146857|ENST00000662584|STRA8;nc|ENSG00000146857|Q7Z7C7|STRA8 0.6014990680409731 0.29233206172879045 2 H 1 9 3.0989 0 0 0.38653 0 0 514.7190460229514 146.9377840631469 661.6568300860982 0 0 0 0 0 0 0 0 0 H 0.38653 - 2 + NaN NaN 99682.6 NaN 1825 1765 3587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3594 28.037 NaN 697330 35 0 275930 0.327 + 3024 EADPGSAAP 9 46 407.6826188921226 813.3506848510452 2 407.68255615234375 MULTI HCD FTMS 0 0 0 3593 674918 0.537432330044246 4 -0.05520439147949219 1 Unmodified _EADPGSAAP_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 74.42276476219924 0.007657080072768255 2 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 6 5 47.625 0 0 5.8554 0 0 182.06863600898595 0 182.06863600898595 0 28.32773124424534 0 0 0 1.4247425010840047 0 1.274227503252014 0 D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AAP 5.8554 - 105 NaN NaN 187267.3 NaN 1826 1766 3593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3595 28.042 NaN 23735 35 0 5712.7 0.261 -1 0 22 585.3747342072367 584.3674577406366 1 585.3748168945312 MULTI HCD FTMS 0 0 0 3593 10917.265625 0.22791918240001552 -13 0.20904541015625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85113.6 NaN 1827 1766 3593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3596 28.045 NaN 22831 35 0 4328.7 0.261 + 22861 QYNPHVHQL 9 20 568.2860776707372 1134.5576024082743 2 568.27783203125 MULTI HCD FTMS 0 0 0 3593 5415.49462890625 0.03770586759743437 14 -0.24687767028808594 3 Unmodified _QYNPHVHQL_ ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5 1.844237919475145 0.33703635659052655 2 V 1 8 6.9897 0 0 0.61607 0 0 405.16711276159305 627.3069552057249 1032.474067967318 0 0 0 0 0 0 0 0 0 + V 0.61607 + + 1 + NaN NaN 90071.1 NaN 1828 1766 3593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3598 28.051 NaN 835660 35 0 241470 0.327 + 29552 VAAAESHPL 9 66 447.7373349806842 893.4601170281684 2 447.73712158203125 MULTI HCD FTMS 0 0 0 3597 350659.21875 0.7221217728586191 -3 0.050395965576171875 1 Unmodified _VAAAESHPL_ ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF 97.07464715276575 0.004340583992084827 2 VAAAESH[{I|L}P] 9 0 + 89.919 0 0 10.064 10.064 97.317 0 0 0 85.48245664532708 5.6424927368725974 5.6424927368725974 22.545999481098633 0 2.2302046884880937 1.6989700043360187 0.805462187404089 0 + + VAAAESH[{I|L}P];{[VA]|[{I|L}G]}AATDH[{I|L}P];[Q{I|L}]ATDH[{I|L}P];{[VA]|[{I|L}G]}E[QT]H[{I|L}P];VNVESH[{I|L}P];AAVATDH[{I|L}P];{[VA]|[{I|L}G]}[DG]VSH[{I|L}P];{[NV]|[RG]}VTDH[{I|L}P];AAAVTDH[{I|L}P];V{I|L}[DN]SH[{I|L}P] 10.064;7.5407;4.3545;4.3466;4.3344;4.2086;3.3336;2.849;2.7031;2.3974 +;-;-;-;-;-;-;-;-;- + 410 + NaN NaN 208475.7 NaN 1829 1767 3597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3599 28.055 NaN 234990 35 0 22175 0.261 + 9237 HPLSDHEATL 10 52 560.275140829622 1118.535728726044 2 560.2748413085938 MULTI HCD FTMS 0 0 0 3597 76840.1171875 0.012314476569436298 -13 0.21224021911621094 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 65.23502041540118 0.023231415588018726 2 EAT{I|L} 4 6 42.155 0 0 3.7687 0 0 686.31254775215 0 686.31254775215 0 11.431715384352081 0 0 0 0.4247425010840047 0 1.5 0 + EAT{I|L} 3.7687 + + 80 NaN NaN 128621.9 NaN 1830 1767 3597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3600 28.059 NaN 17540 35 0 5590.8 0.261 + 11822 KELQRFKET 9 15 589.8300711224944 1177.6455893117886 2 590.3309326171875 MULTI HCD FTMS 0 0 0 3597 9413.2509765625 0.01451197972657025 67 -1.0520763397216797 3 Unmodified _KELQRFKET_ REV__ENST00000496567.5_1_9:97782011-97782122:+|nuORF 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105985.5 NaN 1831 1767 3597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3601 28.062 NaN 29050 35 0 5353.8 0.261 + -1 TMTFCIPY 8 22 524.7252209030704 NaN 0 524.7252197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _TM(Oxidation (M))TFC(Carbamidomethyl (C))IPY_ REV__ENSG00000140688|ENST00000327237|RUSF1 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107335.7 NaN 1832 1767 3597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3602 28.065 NaN 24141 35 0 4678.2 0.261 + 3418 EFERRNWV 8 23 568.2860776707372 1134.5576024082743 2 568.2862548828125 MULTI HCD FTMS 0 0 0 3597 5424.900390625 0.03777135605792092 15 -0.2505455017089844 5 Unmodified _EFERRNWV_ ENSG00000204186|ENST00000374423|ZDBF2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94978.8 NaN 1833 1767 3597 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3604 28.071 NaN 90338 35 0 8486.1 0.327 + 9183 HPLEGTHEL 9 41 516.7594132819466 1031.5042736306932 2 516.7595825195312 MULTI HCD FTMS 0 0 0 3603 24059.203125 0.7530674893507656 -5 0.09395599365234375 1 Unmodified _HPLEGTHEL_ ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant 15.847184025352803 0.2234401846867398 2 {I|L}C{I|L} 3 7 27.435 0 0 2.6597 0 0 684.3090077130875 0 684.3090077130875 0 20.445312593723983 0 0 0 0.4247425010840047 0 0 0 {I|L}C{I|L} 2.6597 - 9 NaN NaN 97181.1 NaN 1834 1768 3603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3605 28.075 NaN 58635 35 0 12189 0.261 + -1 DEVHECHV 8 27 512.7118184193465 1023.409083905493 2 512.71142578125 MULTI HCD FTMS 0 0 0 3603 21121.49609375 0.8920875879026516 1 -0.013406753540039062 2 Carbamidomethyl (C) _DEVHEC(Carbamidomethyl (C))HV_ REV__ENSG00000278540|ENST00000616317|ACACA;REV__nc|ENSG00000278540|Q13085-2|ACACA;REV__nc|ENSG00000278540|Q13085-3|ACACA;REV__nc|ENSG00000278540|Q13085|ACACA 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.44988 0 0 106.06581409751125 767.2902315729124 873.3560456704237 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.44988 - 5 + NaN NaN 98703.1 NaN 1835 1768 3603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3606 28.079 NaN 52709 35 0 10149 0.261 + -1 GWAQGCKC 8 35 455.1886717438233 NaN 0 455.1888122558594 PEAK HCD FTMS 0 0 0 3603 6596.6826171875 0.4590534369903396 -9 0.1613597869873047 3 Carbamidomethyl (C) _GWAQGC(Carbamidomethyl (C))KC_ REV__ENSG00000115267|ENST00000649979|IFIH1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104892.4 NaN 1836 1768 3603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3608 28.084 NaN 88696 35 0 20918 0.411 + 28071 TGTEAHVAE 9 40 457.71435141608134 913.4141498989627 2 458.22332763671875 MULTI HCD FTMS 0 0 0 3607 4249.72705078125 0.27430853043381354 16 -0.2522869110107422 1 Unmodified _TGTEAHVAE_ ENSG00000170677|ENST00000397942|SOCS6 10.823927491677226 0.26684000660059787 2 [PS]{[CT]|[{M(Oxidation (M))|F}G]}HAV{[CP]|[EA]} 9 5 [PS]{[CT]|[{M(Oxidation (M))|F}G]}HA + + 9.437 -6.2797 -1.0532 1.0332 1.0332 59.672 0 0 0 0 6.3380312008851565 0 0 0 0.5 0 0 0 [PS]{[CT]|[{M(Oxidation (M))|F}G]}HAV{[CP]|[EA]} 1.0332 - 18 + NaN NaN 115221.6 NaN 1837 1769 3607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3610 28.092 NaN 1143800 35 0 159150 0.326 + 3018 EADPGQYRC 9 57 519.7191781000034 1037.4238032668068 2 519.7189331054688 MULTI HCD FTMS 0 0 0 3609 331423.0625 0.5109548362926901 -8 0.1290111541748047 1 Unmodified _EADPGQYRC_ ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-2|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG 99.75527289724121 0.004270341300239591 2 [PG]QDAEYRC 9 6 + 50.333 0 0 4.8517 4.8517 84.966 0 0 0 0.11993046835002019 14.169402364071004 0.11993046835002019 6.9897000433601875 0 0.8807196863200843 0 1.4247425010840047 0.4247425010840047 [PG]QDAEYRC;[PG]DQAEYRC;[PG][AG]DAEYRC;[PG]D[AG]AEYRC;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;{[CP]|[EA]}D[HV]GP[NP]C;[PG]DQ{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;[PG]D[PG]{[CA]|SS}YRC;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}[YK]C;[PG][AG]D{NN|[MP]|[D{I|L}]|[EV]}P[C(Carbamidomethyl (C))H] 4.8517;4.1779;3.5547;2.8809;2.6025;2.0306;1.9287;1.7473;1.3114;0.89343 -;-;-;-;-;-;-;-;-;- 441 NaN NaN 275416.5 NaN 1838 1770 3609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3611 28.097 NaN 31779 35 0 4454.7 0.261 + 8982 HPEDTETPP 9 21 511.72410713188987 1021.4336613305798 2 511.7239685058594 MULTI HCD FTMS 0 0 0 3609 9795.02734375 0.3699901184560593 7 -0.14289093017578125 2 Unmodified _HPEDTETPP_ ENSG00000132849|ENST00000642238|PATJ;ENST00000484937.5_1_1:62582831-62626723:+|nuORF 4.3292370932331545 0.3181982124262546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95748.7 NaN 1839 1770 3609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3612 28.1 NaN 66204 35 0 11093 0.261 + 1712 CHDYAFVK 8 31 491.72736285755263 981.4401727819053 2 491.7268981933594 MULTI HCD FTMS 0 0 0 3609 10968.970703125 0.590860800373026 7 -0.14289093017578125 3 Unmodified _CHDYAFVK_ REV__ENSG00000197892|ENST00000524189|KIF13B 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89889 NaN 1840 1770 3609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3613 28.103 NaN 30862 35 0 6369.8 0.261 + 33083 YDPWWNTT 8 19 541.7305313952824 1081.4465098573646 2 542.7306518554688 MULTI HCD FTMS 0 0 0 3609 5946.255859375 0.5828273727279871 6 -0.1199188232421875 4 Unmodified _YDPWWNTT_ tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1 1.844237919475145 0.5392561982033289 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94429 NaN 1841 1770 3609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3614 28.107 NaN 12906 35 0 3222.4 0.261 -1 LCVCMVFFGQ 10 11 602.2727473733272 1202.5309418134543 2 602.2722778320312 MULTI HCD FTMS 0 0 0 3609 5135.33935546875 0.6753260688027471 -1 0.008207321166992188 5 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VCMVFFGQ_ ENST00000469897.1_1_7:99051318-99054120:+|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86690.3 NaN 1842 1770 3609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3616 28.112 NaN 46918 35 0 5408.2 0.327 -1 FLEHMCRL 8 27 553.2673400761232 NaN 0 553.2673950195312 PEAK HCD FTMS 0 0 0 3615 14385.8984375 0.45858820123370125 -13 0.21303367614746094 1 Carbamidomethyl (C) _FLEHMC(Carbamidomethyl (C))RL_ ENSG00000067225|ENST00000335181|PKM;ENST00000564276.1_1_15:72502555-72511438:-|nuORF;nc|ENSG00000067225|P14618-2|PKM 2.0597508629832335 0.38822285293237185 2 T 1 -1 2.4743 0 0 0.22401 0 0 534.7677601309589 465.6786287897094 1000.4463889206684 0 0 0 0 0 0 0 0 0 T 0.22401 - 3 + NaN NaN 117072.5 NaN 1843 1771 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3617 28.117 NaN 16037 35 0 6002.7 0.261 -1 RFRNWQAYM 9 12 644.3036518561685 NaN 0 644.3027954101562 PEAK HCD FTMS 0 0 0 3615 7573.68310546875 0.7049190303787417 -5 0.07501411437988281 2 Oxidation (M) _RFRNWQAYM(Oxidation (M))_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101351.6 NaN 1844 1771 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3618 28.12 NaN 33115 35 0 10403 0.261 + 12023 KHPRYWIM 8 22 565.8001195402661 NaN 0 565.8184814453125 PEAK HCD FTMS 0 0 0 3615 2252.983642578125 0.9296701432421359 -1 0.019809722900390625 3 Unmodified _KHPRYWIM_ ENST00000380636.1_1_X:12993391-12993475:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97357.8 NaN 1845 1771 3615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3620 28.126 NaN 138640 35 0 15129 0.326 + 19123 NFLRDMCKKY 10 35 439.88624507875744 1316.6369058364724 3 439.8855895996094 MULTI HCD FTMS 0 0 0 3619 42699.8359375 0.07526247503450828 -6 0.08843421936035156 1 Unmodified _NFLRDMCKKY_ ENSG00000139718|ENST00000604567|SETD1B;nc|ENSG00000139718|Q9UPS6-2|SETD1B 1.7422754331352037 0.46608156381052757 2 {I|L}DHV[HC] 6 8 26.911 0 0 2.0439 0 0 594.3106556623062 0 594.3106556623062 0 21.42667503568731 0 0 0 0 0 0 0 {I|L}DHV[HC] 2.0439 - 19 NaN NaN 120397.7 NaN 1846 1772 3619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3621 28.13 NaN 78610 35 0 14532 0.261 + 19157 NGTVPVNYI 9 39 488.75699445461214 975.4994359760243 2 488.7559509277344 MULTI HCD FTMS 0 0 0 3619 18910.744140625 0.5874057378692686 -4 0.054843902587890625 2 Unmodified _NGTVPVNYI_ REV__RNF133|p.G134V|1|0.23|ENSG00000188050|chr7:122698518-122698518|C/A|missense_variant 6.723162845929126 0.3000504726104499 2 V[YQ] 3 -1 5.0617 0 0 0.51888 0 0 567.2955918371556 0 567.2955918371556 0 5.061668675368624 0 0 0 0 0 0 0 V[YQ] 0.51888 - 5 + NaN NaN 100587.9 NaN 1847 1772 3619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3622 28.134 NaN 24582 35 0 6543.8 0.261 + 12629 KVVDGHYAPV 10 16 542.7926508246586 NaN 0 542.7931518554688 PEAK HCD FTMS 0 0 0 3619 10108.4560546875 0.9848629211071352 1 -0.016775131225585938 3 Unmodified _KVVDGHYAPV_ REV__ENSG00000143772|ENST00000429204|ITPKB 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83046.5 NaN 1848 1772 3619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3623 28.137 NaN 13592 35 0 3492.8 0.261 + 18432 MPVCHTGKRVI 11 15 620.8361188871052 1239.6576848410102 2 620.83544921875 MULTI HCD FTMS 0 0 0 3619 7185.7841796875 0.338811963175975 5 -0.10966110229492188 4 Unmodified _MPVCHTGKRVI_ ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;nc|ENSG00000163803|Q6P1J6-4|PLB1 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86842.8 NaN 1849 1772 3619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3625 28.142 NaN 970740 35 0 266230 0.327 + 9372 HPTDDTTTL 9 38 500.73280223092934 999.4510515286587 2 500.7327880859375 MULTI HCD FTMS 0 0 0 3624 533906.125 0.3475415654520698 9 -0.158782958984375 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 46.020951573049366 0.037705236580089195 2 TTT{I|L} 4 5 51.23 0 0 5.1258 0 0 565.211229392775 0 565.211229392775 0 39.992822134202015 0 0 0 1.305462187404089 0 0.9247425010840047 0 + TTT{I|L} 5.1258 + + 28 NaN NaN 239575.7 NaN 1850 1773 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3626 28.147 NaN 104490 35 0 13775 0.261 + 9051 HPESGEVTV 9 26 477.73013626835854 953.4457196035171 2 477.7297668457031 MULTI HCD FTMS 0 0 0 3624 49375.21484375 0.9161750582573179 1 -0.0200653076171875 2 Unmodified _HPESGEVTV_ ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant 10.823927491677226 0.26684000660059787 2 VTV 3 6 31.198 0 0 3.2721 0 0 636.2501698224625 0 636.2501698224625 0 31.197887582883936 0 0 0 0.5 0 0 0 + VTV 3.2721 + + 5 NaN NaN 120413.5 NaN 1851 1773 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3627 28.15 NaN 53568 35 0 7967.7 0.261 + 26573 SVSEVHPSRL 10 21 555.7986892967572 1109.5828256603143 2 555.7985229492188 MULTI HCD FTMS 0 0 0 3624 17706.6875 0.5049744795225142 3 -0.06991386413574219 3 Unmodified _SVSEVHPSRL_ ENSG00000115415|ENST00000361099|STAT1 4.5288652416199255 0.4513317009562028 2 VH 2 8 15.217 0 0 1.3714 0 0 402.17555134566425 468.2558391231809 870.4313904688452 0 0 0 0 0 0.4247425010840047 0 0 0 + VH 1.3714 + + 4 + NaN NaN 100668.9 NaN 1852 1773 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3628 28.154 NaN 58938 35 0 7220 0.261 + 34986 YSSTQVSVR 9 26 513.7646995208158 1025.5148461084316 2 513.7644653320312 MULTI HCD FTMS 0 0 0 3624 12999.841796875 0.61185815013983 -3 0.05000495910644531 4 Unmodified _YSSTQVSVR_ ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST 16.149105407346934 0.22083165093524068 2 VQ{[MG]|[TS]}[MT] 6 7 11.884 0 0 1.1589 0 0 360.21138198066564 0 360.21138198066564 0 7.904849854573685 0 0 0 0.5 0 0.5 0 VQ{[MG]|[TS]}[MT] 1.1589 - 13 NaN NaN 114863.2 NaN 1853 1773 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3629 28.157 NaN 45709 35 0 9303.4 0.261 + 1997 DAVGTAVSSR 10 29 481.7488221540313 961.4830913748626 2 481.7484130859375 MULTI HCD FTMS 0 0 0 3624 7345.49169921875 0.18844928233381186 -4 0.0582122802734375 5 Unmodified _DAVGTAVSSR_ ENST00000020945.3_2_8:49832997-49833910:-|nuORF 20.580933911654288 0.31860490502175054 2 WV{[SA]|[TG]}AV 6 5 34.442 0 0 3.5822 0 0 0 345.15403162174067 345.15403162174067 34.4420594384119 0 0 0 0 1 0 0.3807196863200844 0 WV{[SA]|[TG]}AV 3.5822 - 21 + NaN NaN 90905.4 NaN 1854 1773 3624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3631 28.162 NaN 430900 35 0 38562 0.327 + 12385 KPESNEQVL 9 74 522.2718692855757 1042.5291856379513 2 522.2716064453125 MULTI HCD FTMS 0 0 0 3630 169497.5 0.7352043366851772 5 -0.1087188720703125 1 Unmodified _KPESNEQVL_ ENSG00000165832|ENST00000298746|TRUB1 17.11289562659939 0.2125047172822487 2 TTYDTV{I|L} 7 7 37.159 0 0 3.5643 0 0 231.13289076972814 0 231.13289076972814 0 11.620564873333823 0 0 0 0.5 0 0 0 TTYDTV{I|L} 3.5643 - 253 NaN NaN 155498.8 NaN 1855 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3632 28.167 NaN 224720 35 0 33781 0.261 + -1 CAAHHHGLS 9 54 495.22122025617375 NaN 0 495.230224609375 PEAK HCD FTMS 0 0 0 3630 5025.6923828125 0.31493067932759666 25 -0.41970062255859375 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))AAHHHGLS_ REV__ENST00000399410.7_1_16:16103685-16110378:+|nuORF 4.3292370932331545 0.2742679634796037 2 AEH 3 -1 16.287 0 0 1.6477 0 0 102.0362046564597 546.2334688775999 648.2696735340596 0 0 0 0 0 0 0 0.7614393726401688 0 AEH 1.6477 - 17 + NaN NaN 112604 NaN 1856 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3633 28.17 NaN 23146 35 0 5707.6 0.261 -1 TEEEEEEE 8 16 533.1908842748642 NaN 0 533.1911010742188 PEAK HCD FTMS 0 0 0 3630 8836.4521484375 0.4902688280873434 -11 0.1856403350830078 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TEEEEEEE_ ABCF1|p.S140T|1|0.78|ENSG00000204574|chr6:30578507-30578507|G/C|missense_variant;ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant;ENSG00000054523|ENST00000676179|KIF1B;ENSG00000100813|ENST00000605057|ACIN1;ENSG00000105393|ENST00000598188|BABAM1;ENSG00000120645|ENST00000538872|IQSEC3;ENSG00000130175|ENST00000677123|PRKCSH;ENSG00000147166|ENST00000373829|ITGB1BP2;ENSG00000147394|ENST00000695776|ZNF185;ENSG00000167670|ENST00000301280|CHAF1A;ENSG00000174446|ENST00000316634|SNAPC5;ENSG00000183304|ENST00000381003|FAM9A;ENSG00000197520|ENST00000445590|FAM177B;ENSG00000224089|ENST00000430448|CT47A10;ENSG00000225830|ENST00000355832|ERCC6;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236446|ENST00000371311|CT47B1;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000242362|ENST00000458218|CT47A2;ENST00000448635.2_1_19:17378325-17387315:+|nuORF;ENST00000568875.1_1_15:66786776-66787321:-|nuORF;ENST00000585325.5_1_19:11557144-11558756:+|nuORF;ENST00000585540.1_1_19:11558256-11559107:+|nuORF;ENST00000592445.1_1_19:11558256-11558487:+|nuORF;ENST00000592937.1_1_19:2477660-2478092:+|nuORF;ENST00000595393.5_1_19:17378325-17387472:+|nuORF;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000120645|Q9UPP2-2|IQSEC3;nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000174446|O75971-2|SNAPC5;nc|ENSG00000182606|Q9UPV9-2|TRAK1;nc|ENSG00000197520|A6PVY3-2|FAM177B;nc|ENSG00000225830|P0DP91|ERCC6;nc|ENSG00000269307|Q9NWV8-3|BABAM1;REV__ENSG00000008128|ENST00000404249|CDK11A;REV__ENSG00000029559|ENST00000226284|IBSP;REV__ENSG00000100353|ENST00000216190|EIF3D;REV__ENSG00000119041|ENST00000263956|GTF3C3;REV__ENSG00000120645|ENST00000538872|IQSEC3;REV__ENSG00000131116|ENST00000300811|ZNF428;REV__ENSG00000133706|ENST00000394434|LARS1;REV__ENSG00000174348|ENST00000312553|PODN;REV__ENSG00000181378|ENST00000341552|CFAP65;REV__ENSG00000198835|ENST00000366714|GJC2;REV__ENSG00000198838|ENST00000634891|RYR3;REV__ENSG00000198853|ENST00000361226|RUSC2;REV__ENSG00000248333|ENST00000341832|CDK11B;REV__ENST00000462641.1_1_22:36907036-36908721:-|nuORF;REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF;REV__nc|ENSG00000008128|Q9UQ88-3|CDK11A;REV__nc|ENSG00000008128|Q9UQ88-4|CDK11A;REV__nc|ENSG00000008128|Q9UQ88-9|CDK11A;REV__nc|ENSG00000008128|Q9UQ88|CDK11A;REV__nc|ENSG00000100353|O15371-2|EIF3D;REV__nc|ENSG00000100353|O15371-3|EIF3D;REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3;REV__nc|ENSG00000124313|Q5JU85-4|IQSEC2;REV__nc|ENSG00000133706|Q9P2J5-2|LARS1;REV__nc|ENSG00000174348|Q7Z5L7-2|PODN;REV__nc|ENSG00000174348|Q7Z5L7-3|PODN;REV__nc|ENSG00000174348|Q7Z5L7-4|PODN;REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198838|Q15413-3|RYR3;REV__nc|ENSG00000248333|P21127-10|CDK11B;REV__nc|ENSG00000248333|P21127-3|CDK11B;REV__nc|ENSG00000248333|P21127-5|CDK11B;REV__nc|ENSG00000248333|P21127-6|CDK11B;REV__nc|ENSG00000248333|P21127-8|CDK11B;REV__nc|ENSG00000248333|P21127-9|CDK11B;REV__nc|ENSG00000248333|P21127|CDK11B 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78422.1 NaN 1857 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3634 28.174 NaN 19676 35 0 3258.1 0.261 -1 STIEMPQQAR 10 16 588.7875120552129 NaN 0 588.7870483398438 PEAK HCD FTMS 0 0 0 3630 4883.12255859375 0.3886159164951619 -9 0.14543914794921875 4 Oxidation (M) _STIEM(Oxidation (M))PQQAR_ ENSG00000198523|ENST00000357525|PLN 2.9952420565917617 0.3376207769591857 2 E{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.9331 0 0 301.1633286985132 595.2948092096311 896.4581379081444 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 0.9331 + + 3 + NaN NaN 105042.9 NaN 1858 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3635 28.177 NaN 39489 35 0 5669.2 0.262 + 1998 DAVGTAVSSR 10 22 481.7488221540313 961.4830913748626 2 481.7497863769531 MULTI HCD FTMS 0 0 0 3630 15525.31640625 0.3983034566732057 -3 0.05026054382324219 5 Unmodified _DAVGTAVSSR_ ENST00000020945.3_2_8:49832997-49833910:-|nuORF 16.565877749689598 0.3561603856738253 2 {[RE]|[WV]}{[SA]|[TG]}AV 6 5 18.161 0 0 1.8888 0 0 0 345.15131555728755 345.15131555728755 7.703037561203844 0 0 0 0 1 0 0 0 {[RE]|[WV]}{[SA]|[TG]}AV 1.8888 - 10 + NaN NaN 96128.7 NaN 1859 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3636 28.18 NaN 29612 35 0 4017 0.261 + -1 CMGYPCCQ 8 22 546.1748129258802 NaN 0 546.1747436523438 PEAK HCD FTMS 0 0 0 3630 8134.05517578125 0.7937056503246854 -3 0.05026054382324219 6 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))GYPC(Carbamidomethyl (C))C(Carbamidomethyl (C))Q_ REV__ENSG00000133067|ENST00000367278|LGR6;REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF;REV__nc|ENSG00000133067|Q9HBX8-1|LGR6;REV__nc|ENSG00000133067|Q9HBX8-2|LGR6 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95734.3 NaN 1860 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3637 28.184 NaN 93434 35 0 30736 0.263 -1 LYTLYFRW 8 36 401.8780063082021 NaN 0 401.8779296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LYTLYFRW_ ENST00000489185.1_1_1:62941462-62941510:-|nuORF 0.6903765706972694 0.38822285293237185 2 H 1 -1 3.0989 0 0 0.38653 0 0 514.7198360033199 146.93873010806877 661.6585661113886 0 0 0 0 0 0 0 0 0 H 0.38653 - 1 + NaN NaN 90633.3 NaN 1861 1774 3630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3639 28.189 NaN 714170 35 0 229850 0.327 + 29553 VAAAESHPL 9 61 447.7373349806842 893.4601170281684 2 447.7373046875 MULTI HCD FTMS 0 0 0 3638 275974.5625 0.5683216914894863 5 -0.09492683410644531 1 Unmodified _VAAAESHPL_ ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000489392.1_1_9:136216448-136216496:+|nuORF 85.35673624503755 0.00464763827098139 2 VAAAESH[{I|L}P] 9 0 + 88.95 0 0 9.9557 9.9557 97.701 0 0 0 85.39381281052492 5.6424927368725974 5.6424927368725974 28.368193983395642 0 2.2302046884880937 1.6989700043360187 0.805462187404089 0 + + VAAAESH[{I|L}P];{[VA]|[{I|L}G]}AATDH[{I|L}P];{[VA]|[{I|L}G]}AATDP[H{I|L}];VNVESH[{I|L}P];{[VA]|[{I|L}G]}E[QT]H[{I|L}P];[Q{I|L}]ATDH[{I|L}P];{[VA]|[{I|L}G]}E[QT]P[H{I|L}];[Q{I|L}]ATDP[H{I|L}];V{I|L}[DN]SH[{I|L}P];{[NV]|[RG]}VTDH[{I|L}P] 9.9557;6.7806;5.8598;4.226;4.154;3.5944;3.2332;2.6736;2.2495;2.0889 +;-;-;-;-;-;-;-;-;- + 304 + NaN NaN 208049 NaN 1862 1775 3638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3640 28.197 NaN 128760 35 0 42586 0.271 + 2035 DEASPQAP 8 32 407.6826188921226 813.3506848510452 2 407.6824951171875 MULTI HCD FTMS 0 0 0 3638 114872.8046875 0.0914723849147907 13 -0.19330787658691406 2 Unmodified _DEASPQAP_ REV__ENST00000424611.5_1_15:20644728-20658919:-|nuORF;REV__ENST00000428453.5_1_15:20588586-20667676:-|nuORF;REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF;REV__ENST00000437318.5_1_15:20645779-20651177:-|nuORF;REV__ENST00000529624.5_3_15:28877823-28916776:+|nuORF;REV__nc|ENSG00000290376|Q9BVR0|HERC2P3 28.486842064014134 0.3788298654084067 2 AP 2 -1 30.217 0 0 3.7151 0 0 627.2497425763687 0 627.2497425763687 0 25.612431371158735 0 0 0 0.9247425010840047 0 0 0 AP 3.7151 + + 12 NaN NaN 102725.6 NaN 1863 1775 3638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3641 28.2 NaN 497470 35 0 173360 0.261 + 25965 SPDGSDPKL 9 42 458.22478288850095 914.4350128438019 2 458.2244873046875 MULTI HCD FTMS 0 0 0 3638 249837.28125 0.5753162432279855 -3 0.06351661682128906 3 Unmodified _SPDGSDPKL_ ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48 53.40400417844725 0.026808823219830042 2 [PS]DGSDPK{I|L} 9 0 + 70.258 0 0 7.6832 7.6832 87.24 0 0 0 9.771212547196626 15.65552802072581 9.771212547196626 0.7403126772771884 0 1.718765315847925 1.6989700043360187 0.9247425010840047 0 + + [PS]DGSDPK{I|L};[PS]DGDSPK{I|L};[DP]SGSDPK{I|L};[DP]SGDSPK{I|L} 7.6832;7.6022;6.6146;6.5337 +;-;-;- + 101 NaN NaN 149877.6 NaN 1864 1775 3638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3642 28.204 NaN 52654 35 0 5040.3 0.261 + -1 HCQFQCAC 8 24 527.1884109856283 1052.3622690380564 2 527.1884155273438 MULTI HCD FTMS 0 0 0 3638 21330.6171875 0.24137164051921195 10 -0.14733314514160156 4 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))QFQC(Carbamidomethyl (C))AC_ REV__ENSG00000241697|ENST00000374879|TMEFF1;REV__nc|ENSG00000241697|Q8IYR6-2|TMEFF1 0.7936320650641473 0.540814922690045 2 A 1 -1 4.6041 0 0 0.4375 0 0 473.1351705046564 505.1661471002563 978.3013176049127 0 0 0 0 0 0 0 0 0 A 0.4375 + + 5 + NaN NaN 101316.6 NaN 1865 1775 3638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3643 28.207 NaN 23907 35 0 5439.3 0.261 + 14448 LESEQKQQF 9 17 568.7822648711388 1135.5499768090774 2 568.7819213867188 MULTI HCD FTMS 0 0 0 3638 16779.64453125 0.569635030708003 -1 0.026676177978515625 5 Unmodified _LESEQKQQF_ ENSG00000163840|ENST00000296161|DTX3L 12.240655878213236 0.2545997876781172 2 Q{M(Oxidation (M))|F} 2 7 25.217 0 0 2.2206 0 0 842.4088612287125 0 842.4088612287125 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + Q{M(Oxidation (M))|F} 2.2206 + + 3 NaN NaN 86721.6 NaN 1866 1775 3638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3645 28.212 NaN 6338800 35 0 512290 0.327 + 9238 HPLSDHEATL 10 114 560.275140829622 1118.535728726044 2 560.275634765625 MULTI HCD FTMS 0 0 0 3644 4529193.5 0.7258532297406015 -4 0.08668899536132812 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 181.3275282027936 3.980396822113991E-16 2 HP{I|L}SDHEAT{I|L} 10 0 + 72.493 0 0 6.4811 6.4811 84.764 0 0 0 15.478845663718069 16.56173420760374 15.478845663718069 0.030834337684311208 0 2.4802046884880937 0 2.4940840204505514 0 + + HP{I|L}SDHEAT{I|L};H{I|L}PSDHEAT{I|L};{I|L}HPSDHEAT{I|L};HP{I|L}[HD]SEAT{I|L};H{I|L}P[HD]SEAT{I|L};[{I|L}T]AE[EP]M{I|L}C{I|L};{I|L}HP[HD]SEAT{I|L};[{I|L}T]AE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EPC{I|L};H{I|L}H[DP]SEAT{I|L};{I|L}HH[DP]SEAT{I|L} 6.4811;6.4783;6.1721;5.0878;5.0851;4.83;4.7789;4.6765;4.2127;3.9065 +;-;-;-;-;-;-;-;-;- + 15618 + NaN NaN 1061108.1 NaN 1867 1776 3644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3646 28.216 NaN 729550 35 0 76985 0.262 + 27737 TATATNHVL 9 81 464.2484529403007 926.4823529474014 2 464.2481994628906 MULTI HCD FTMS 0 0 0 3644 490830.1875 0.5153438038916144 -6 0.1199188232421875 2 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 103.35351024395868 0.004027461563756449 2 [TA]TAT[HN]V{I|L} 9 0 + 73.857 0 0 7.9718 7.9718 95.177 0 0 0 56.7632983043318 14.09256854528806 14.09256854528806 23.469552425944116 0 1.9947026752325154 1.6989700043360187 0.75 0.6109243748081782 + + [TA]TAT[HN]V{I|L};[TA]TAT{[QV]|[N{I|L}]|[RA]|[KV]}[HV];[TA][PG][KQ]AT[PG];{NN|[MP]|[D{I|L}]|[EV]}[RP]TAT[PG];[TA]{[HG]|PP}{I|L}{[DA]|[EG]}{[QD]|[EN]|[WG]|[KD]|[RS]};[EP]APA{I|L}S{[QD]|[EN]|[WG]|[KD]|[RS]};{NN|[MP]|[D{I|L}]|[EV]}[RP]T[PG][TA] 7.9718;5.4386;5.2659;3.6048;2.4115;0.92174;0.38463 +;-;-;-;-;-;- + 615 + NaN NaN 209796 NaN 1868 1776 3644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3647 28.22 NaN 68200 35 0 7019.1 0.261 + 9184 HPLEGTHEL 9 31 516.7594132819466 1031.5042736306932 2 516.759521484375 MULTI HCD FTMS 0 0 0 3644 10427.4453125 0.32638529302191027 3 -0.05887031555175781 3 Unmodified _HPLEGTHEL_ ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant 7.910154910731844 0.2910521888787154 2 C{I|L} 2 8 23.711 0 0 2.2987 0 0 797.3966541974625 0 797.3966541974625 0 16.721675119240516 0 0 0 0.4247425010840047 0 0 0 C{I|L} 2.2987 - 10 NaN NaN 97511.1 NaN 1869 1776 3644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3648 28.223 NaN 28010 35 0 4589.5 0.261 -1 HPFCLSTSLES 11 19 639.295546380604 1276.576539828008 2 639.2952880859375 MULTI HCD FTMS 0 0 0 3644 15329.908203125 0.212060706069202 -12 0.21207237243652344 4 Carbamidomethyl (C) _HPFC(Carbamidomethyl (C))LSTSLES_ ENST00000475699.5_1_X:153649922-153650000:+|nuORF 2.9952420565917617 0.40578455234410343 2 HP 2 -1 25.969 0 0 2.0343 0 0 0 1039.4413116687197 1039.4413116687197 25.969100130080562 0 0 0 0 0.5 0 0 0 HP 2.0343 + + 4 + NaN NaN 83032.4 NaN 1870 1776 3644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3649 28.227 NaN 16879 35 0 3393.3 0.261 + 13958 KYRLVEEKN 9 16 589.8303058328029 1177.6460587324057 2 589.8306884765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KYRLVEEKN_ REV__ENSG00000129518|ENST00000250454|EAPP 1.4819007175156935 0.3397831423917744 2 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.4627779596311 883.4627779596311 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.7806 + + 1 + NaN NaN 89646 NaN 1871 1776 3644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3650 28.23 NaN 29006 35 0 3808 0.261 -1 HPHPCYAFL 9 23 571.2658720337856 1140.5171911343712 2 571.2659912109375 MULTI HCD FTMS 0 0 0 3644 17375.5546875 0.8627056012204722 -5 0.10010910034179688 6 Carbamidomethyl (C) _HPHPC(Carbamidomethyl (C))YAFL_ ENST00000374888.2_1_X:57623072-57623342:+|nuORF 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90697.1 NaN 1872 1776 3644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3652 28.235 NaN 1508100 35 0 188530 0.327 + 3019 EADPGQYRC 9 59 519.7191781000034 1037.4238032668068 2 519.7193603515625 MULTI HCD FTMS 0 0 0 3651 641156.8125 0.9884712659936891 -1 0.02297210693359375 1 Unmodified _EADPGQYRC_ ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-2|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG 92.65332237495696 0.004456439685314431 2 [PG]QDAEYRC 9 6 + 41.57 0 0 4.007 4.007 82.866 0 0 0 4.137342758552691 9.227211861188849 4.137342758552691 4.48970004336018 0 0.3807196863200844 0 1.3494850021680094 0.4247425010840047 [PG]QDAEYRC;[PG]DQAEYRC;[PG][AG]DAEYRC;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;[PG]D[AG]AEYRC;[PG]DQ{NN|[MP]|[D{I|L}]|[EV]}P{[HG]|PP}C;[PG]QD{NN|[MP]|[D{I|L}]|[EV]}[YK]C;[PG]D[PG]{[CA]|SS}YRC;[PG][AG]D{NN|[MP]|[D{I|L}]|[EV]}P[C(Carbamidomethyl (C))H];[PG]D[YE][QA]RC 4.007;3.5742;2.71;2.3332;2.2772;1.9004;1.023;0.95673;0.86641;0.73272 -;-;-;-;-;-;-;-;-;- 477 NaN NaN 309290.1 NaN 1873 1777 3651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3653 28.239 NaN 92375 35 0 19013 0.261 -1 KSTCCDWCI 9 32 586.7308105535668 1171.4470681739335 2 586.7311401367188 MULTI HCD FTMS 0 0 0 3651 51337.25 0.6212821760109523 -4 0.09288597106933594 2 2 Carbamidomethyl (C) _KSTC(Carbamidomethyl (C))C(Carbamidomethyl (C))DWCI_ sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2 1.6526216038709556 0.33848895094777925 2 V 1 -1 1.5938 0 0 0.13605 0 0 638.2456654413148 431.1101473443969 1069.3558127857118 0 0 0 0 0 0 0 0 0 V 0.13605 - 1 + NaN NaN 98748.3 NaN 1874 1777 3651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3654 28.243 NaN 48202 35 0 5590.1 0.261 + -1 HCGPMKCY 8 26 526.7087315228121 1051.402910112424 2 526.7089233398438 MULTI HCD FTMS 0 0 0 3651 16006.4873046875 0.8503894672474891 1 -0.016277313232421875 3 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))GPMKC(Carbamidomethyl (C))Y_ REV__ENSG00000126603|ENST00000433375|GLIS2 2.8892196856762586 0.5377058178582064 2 Q 1 -1 3.4949 0 0 0.3324 0 0 472.171417047774 448.1439608209594 920.3153778687334 0 0 0 0 0 0 0 0 0 Q 0.3324 - 9 + NaN NaN 101314 NaN 1875 1777 3651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3655 28.246 NaN 67563 35 0 7762.6 0.261 + -1 DETNPDACH 9 38 550.7015931362837 NaN 0 550.70166015625 PEAK HCD FTMS 0 0 0 3651 5577.87890625 0.4253213171781545 1 -0.016277313232421875 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))DETNPDAC(Carbamidomethyl (C))H_ REV__ENSG00000182168|ENST00000453304|UNC5C;REV__UNC5C|p.M609I|1|0.33|ENSG00000182168|chr4:95206703-95206703|C/A|missense_variant 4.3292370932331545 0.2742679634796037 2 H 1 -1 3.4949 0 0 0.31789 0 0 431.0884146887798 528.2200411432249 959.3084558320047 0 0 0 0 0 0 0 0 0 H 0.31789 + + 3 + NaN NaN 100003 NaN 1876 1777 3651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3657 28.251 NaN 928730 35 0 100550 0.327 + 4220 EVCAFACKRKY 11 82 439.88624507875744 1316.6369058364724 3 439.8860778808594 MULTI HCD FTMS 0 0 0 3656 567345.625 1 0 0 1 Unmodified _EVCAFACKRKY_ ENSG00000115568|ENST00000411696|ZNF142;ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142 12.855947597645695 0.34506811884481176 2 EEVHD{I|L}ERKY 10 7 EE + + 66.184 4.9608 1.9221 5.0267 5.0267 62.351 0 0 0 0 28.11365663899273 0 0 0 1.7474250108400469 0 0.2742275032520141 1.3851518780601921 EEVHD{I|L}ERKY 5.0267 - 681 + NaN NaN 223877.1 NaN 1877 1778 3656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3658 28.256 NaN 127340 35 0 23155 0.261 -1 HPASDKIEAYM 11 45 426.53266453466773 1276.5761642042032 3 426.53265380859375 MULTI HCD FTMS 0 0 0 3656 64715.51953125 0.4765679834806066 -12 0.2143726348876953 2 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 14.957161354070239 0.3267601744939039 2 AY{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.2081 0 0 877.4298457001001 0 877.4298457001001 0 21.197887582883936 0 0 0 0.5 0 0 0 AY{M(Oxidation (M))|F} 2.2081 + + 12 + NaN NaN 107024.2 NaN 1878 1778 3656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3659 28.259 NaN 44240 35 0 4914 0.261 + 21344 PSWGSPGGFTL 11 28 553.2673400761232 NaN 0 553.2672119140625 PEAK HCD FTMS 0 0 0 3656 26287.18359375 0.8379728448752212 -6 0.12593841552734375 3 Unmodified _PSWGSPGGFTL_ ENST00000301019.8_1_16:88874828-88874996:+|nuORF 5.296884461304476 0.3270944076746277 2 T 1 10 10.485 0 0 0.94924 0 0 131.09510563681937 869.3515098989645 1000.4466155357838 0 0 0 0 0 0 0 0.5 0 + T 0.94924 + + 1 + NaN NaN 79467.3 NaN 1879 1778 3656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3660 28.262 NaN 57271 35 0 9948.6 0.262 + 4168 ETQLWSWDLAT 11 25 450.5492450339485 1348.6259057020457 3 450.549072265625 MULTI HCD FTMS 0 0 0 3656 3669.30078125 0.18918439366359638 1 -0.019620895385742188 4 Unmodified _ETQLWSWDLAT_ REV__ENSG00000104365|ENST00000520810|IKBKB;REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF;REV__nc|ENSG00000104365|O14920-2|IKBKB;REV__nc|ENSG00000104365|O14920-4|IKBKB 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98663.7 NaN 1880 1778 3656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3661 28.266 NaN 18926 35 0 4046.6 0.261 -1 NWPMDWEEE 9 21 626.2344970703125 NaN 0 626.2344970703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _NWPM(Oxidation (M))DWEEE_ ENSG00000122042|ENST00000380680|UBL3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104179.7 NaN 1881 1778 3656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3663 28.271 NaN 255800 35 0 68219 0.327 + 9373 HPTDDTTTL 9 28 500.73280223092934 999.4510515286587 2 500.73291015625 MULTI HCD FTMS 0 0 0 3662 156084.859375 0.10160208664126802 15 -0.2202625274658203 1 Unmodified _HPTDDTTTL_ ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5 20.453626601364224 0.18364154288633264 2 TT{I|L} 3 6 42.435 0 0 4.2458 0 0 666.2597523419937 0 666.2597523419937 0 31.197887582883936 0 0 0 1 0 0.9247425010840047 0 + TT{I|L} 4.2458 + + 9 NaN NaN 126052 NaN 1882 1779 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3664 28.275 NaN 200110 35 0 38319 0.262 + 12714 KYADLSHNRL 10 49 406.2194295194284 1215.6364591584852 3 406.2193298339844 MULTI HCD FTMS 0 0 0 3662 121383.4453125 0.9990116028641912 -1 0.019620895385742188 2 Unmodified _KYADLSHNRL_ ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1 17.44264345198275 0.3479594151168503 2 KYW{I|L}S 5 6 51.454 0 0 4.2327 0 0 0 535.273202333897 535.273202333897 51.453650195120844 0 0 0 0 1 0 0.3494850021680094 0 KYW{I|L}S 4.2327 - 35 + NaN NaN 114474.4 NaN 1883 1779 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3665 28.279 NaN 14716 35 0 3148.8 0.261 + 19960 NYGEEDEEDGG 11 17 607.210077118271 NaN 0 607.2095336914062 PEAK HCD FTMS 0 0 0 3662 17796.671875 1 0 0 3 Unmodified _NYGEEDEEDGG_ REV__nc|ENSG00000248546|O43423|ANP32CP 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87781.5 NaN 1884 1779 3662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3667 28.284 NaN 202600 35 0 16235 0.411 + 21380 PVDEDTRVL 9 71 522.2718692855757 1042.5291856379513 2 522.2716674804688 MULTI HCD FTMS 0 0 0 3666 54225.03515625 0.2352039469831779 11 -0.1550445556640625 1 Unmodified _PVDEDTRVL_ REV__ENSG00000142949|ENST00000359947|PTPRF;REV__nc|ENSG00000142949|P10586-2|PTPRF 14.838274106304384 0.23215694253501695 2 QV{I|L} 3 -1 36.114 0 0 3.4641 0 0 684.3049183576187 0 684.3049183576187 0 25.541134294324124 0 0 0 0.5 0 0 0.7302046884880937 QV{I|L} 3.4641 - 152 NaN NaN 139269 NaN 1885 1780 3666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3669 28.291 NaN 396180 35 0 63857 0.327 + 27730 TASTNNFPH 9 51 494.72805878975083 987.4415646463017 2 494.72796630859375 MULTI HCD FTMS 0 0 0 3668 86714.9140625 0.7944525718390465 1 -0.009454727172851562 1 Unmodified _TASTNNFPH_ REV__tr|U7ST76|U7ST76_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01318PE=4SV=1 17.11289562659939 0.2125047172822487 2 TAEH 4 -1 32.027 0 0 3.2434 0 0 0 546.2337130182249 546.2337130182249 10.05063163131986 0 0 0 0 0 0 0.7614393726401688 0 TAEH 3.2434 - 51 + NaN NaN 147111.9 NaN 1886 1781 3668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3670 28.296 NaN 39683 35 0 10160 0.261 -1 RNKDMKVAM 9 22 562.7807597604456 NaN 0 563.2564086914062 PEAK HCD FTMS 0 0 0 3668 5464.65869140625 0.4906789759123356 -1 0.007659912109375 2 2 Oxidation (M) _RNKDM(Oxidation (M))KVAM(Oxidation (M))_ ENSG00000182854|ENST00000332238|OR4F15 2.302733041254933 0.2840881193086663 2 V 1 -1 6.9897 0 0 0.62211 0 0 788.3966807984317 233.05986963443596 1021.4565504328676 0 0 0 0 0 0 0 0 0 V 0.62211 + + 1 + NaN NaN 91728.1 NaN 1887 1781 3668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3672 28.301 NaN 83264 35 0 16780 0.327 + 28874 TVTSVVSSR 9 29 468.2615831554625 934.508613377725 2 468.2611999511719 MULTI HCD FTMS 0 0 0 3671 57533.99609375 0.8505425819226057 -2 0.017114639282226562 1 Unmodified _TVTSVVSSR_ ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11 32.037481411007896 0.10189719824197178 2 {[TV]|[{I|L}S]}TSVVS{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 67.853 0 0 7.2609 7.2609 95.786 0 0 0 67.85335007137462 5.6424927368725974 5.6424927368725974 67.85335007137462 0 1.1989700043360187 2 0 0 + + {[TV]|[{I|L}S]}TSVVS{[QD]|[EN]|[WG]|[KD]|[RS]} 7.2609 + + 45 + NaN NaN 97093.7 NaN 1888 1782 3671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3673 28.305 NaN 32453 35 0 5287.3 0.261 -1 YCKMPGCH 8 14 526.7087315228121 1051.402910112424 2 527.21044921875 MULTI HCD FTMS 0 0 0 3671 3522.670654296875 0.23247381039077378 1 -0.012788772583007812 2 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))KMPGC(Carbamidomethyl (C))H_ ENSG00000126603|ENST00000433375|GLIS2 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 91605.4 NaN 1889 1782 3671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3674 28.309 NaN 51996 35 0 8188.4 0.261 -1 PPMCHLTV 8 32 477.73013626835854 953.4457196035171 2 477.7298889160156 MULTI HCD FTMS 0 0 0 3671 16829.240234375 0.31227266961667954 10 -0.16361045837402344 3 Carbamidomethyl (C) _PPMC(Carbamidomethyl (C))HLTV_ ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;ENST00000566882.5_1_15:43482236-43485079:+|nuORF;ENST00000568936.1_1_15:43482505-43485079:+|nuORF;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;nc|ENSG00000166946|O95273-3|CCNDBP1;nc|ENSG00000166946|O95273-4|CCNDBP1 5.230669730166228 0.5342319408533849 2 TV 2 -1 25.969 0 0 2.7237 0 0 735.3166371076187 0 735.3166371076187 0 25.969100130080562 0 0 0 0.5 0 0 0 TV 2.7237 + + 2 NaN NaN 91153.9 NaN 1890 1782 3671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3676 28.314 NaN 103890 35 0 12278 0.327 + 1744 CLCPAATRL 9 40 474.2435471167706 946.4725413003413 2 474.2430419921875 MULTI HCD FTMS 0 0 0 3675 48113.3203125 0.32006582691357216 -7 0.10165786743164062 1 Unmodified _CLCPAATRL_ SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|20|2|sense 13.042465956692817 0.2476723265019929 2 {[DA]|[EG]}TAEATR{I|L} 9 5 + 40.824 0 0 4.3133 4.3133 90.242 0 0 0 21.36046240493748 1.974987195809419 1.974987195809419 40.824412556698135 0 0.7742275032520141 0 0.5 0 {[DA]|[EG]}TAEATR{I|L} 4.3133 - 39 + NaN NaN 93108.3 NaN 1891 1783 3675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3677 28.318 NaN 53603 35 0 9710.6 0.261 + -1 HLAFVMWW 8 26 553.2673400761232 NaN 0 553.2687377929688 PEAK HCD FTMS 0 0 0 3675 21731.375 0.6927445105275528 -1 0.012788772583007812 2 Oxidation (M) _HLAFVM(Oxidation (M))WW_ REV__ENST00000494615.1_1_2:26486295-26492834:+|nuORF 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89171.4 NaN 1892 1783 3675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3679 28.323 NaN 535360 35 0 181990 0.327 + 25966 SPDGSDPKL 9 47 458.22478288850095 914.4350128438019 2 458.22467041015625 MULTI HCD FTMS 0 0 0 3678 328221.90625 0.7558175189231413 6 -0.10204887390136719 1 Unmodified _SPDGSDPKL_ ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48 36.506200033944 0.08138327636155518 2 [PS]D[DG]S[KP]{I|L} 9 2 + 58.847 0 0 6.4353 6.4353 94.071 0 0 0 20.87128018967597 48.389399919613965 20.87128018967597 58.84697482522071 0 1.5 1.5228787452803376 0.8494850021680094 0 [PS]D[DG]S[KP]{I|L} 6.4353 - 27 NaN NaN 167311.2 NaN 1893 1784 3678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3680 28.328 NaN 356150 35 0 19873 0.261 + 28712 TSSAQIIQR 9 73 502.2801837115987 1002.5458144899974 2 502.2802429199219 MULTI HCD FTMS 0 0 0 3678 107478.0703125 0.837267222954372 -2 0.022480010986328125 2 Unmodified _TSSAQIIQR_ ENSG00000076053|ENST00000375490|RBM7;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7 67.83816525789305 0.009787749748478139 2 {[MG]|[TS]}VAQT{I|L}QR 9 2 + 69.848 0 0 6.9671 6.9671 86.108 0 0 0 53.912939259328766 16.478174818886373 16.478174818886373 1.2371250542002343 0 1.110924374808178 0 0.7134679910804405 0 {[MG]|[TS]}VAQT{I|L}QR;{[MG]|[TS]}VAQ{I|L}TQR;{[MG]|[TS]}SAQ{I|L}{I|L}QR;{[MG]|[TS]}VA[AG]T{I|L}QR;{[MG]|[TS]}VAQT{I|L}[AG]R;{[MG]|[TS]}VA[AG]{I|L}TQR;{[MG]|[TS]}VAQ{I|L}T[AG]R;{[MG]|[TS]}VK[PS]TQR;{[MG]|[TS]}SAQ{I|L}{I|L}[AG]R;{[MG]|[TS]}SA[AG]{I|L}{I|L}QR 6.9671;6.8437;6.2304;6.0486;6.0486;5.9252;5.9252;5.4335;5.3119;5.3119 -;-;+;-;-;-;-;-;-;- + 611 + NaN NaN 143564.3 NaN 1894 1784 3678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3681 28.331 NaN 47213 35 0 8019.9 0.261 + -1 AGWCAWYL 8 29 513.7281221590295 1025.4416913848588 2 513.7278442382812 MULTI HCD FTMS 0 0 0 3678 17838.748046875 1 0 0 3 Carbamidomethyl (C) _AGWC(Carbamidomethyl (C))AWYL_ REV__ENST00000477157.5_1_22:17618913-17622310:-|nuORF 2.8892196856762586 0.5377058178582064 2 Q{I|L} 2 -1 20.969 0 0 2.0449 0 0 766.2902088849625 0 766.2902088849625 0 20.969100130080562 0 0 0 0 0 0 0 Q{I|L} 2.0449 - 1 NaN NaN 92765.3 NaN 1895 1784 3678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3683 28.336 NaN 6265600 35 0 521650 0.327 + 9239 HPLSDHEATL 10 109 560.275140829622 1118.535728726044 2 560.2757568359375 MULTI HCD FTMS 0 0 0 3682 4310423.5 0.6907929235138193 5 -0.08923721313476562 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 166.44778350782605 5.805597275734801E-11 2 HP{I|L}SDHEAT{I|L} 10 0 + 69.427 0 0 6.207 6.207 84.288 0 0 0 2.04628427264403 11.652376282210348 2.04628427264403 0.030834337684311208 0 2.504432191740108 0 2.2302046884880937 0 + + HP{I|L}SDHEAT{I|L};H{I|L}PSDHEAT{I|L};{I|L}HPSDHEAT{I|L};{[QN]|[E{I|L}]|[KN]}S{[HG]|PP}YEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AT{I|L};[{I|L}T]AE[EP]M{I|L}C{I|L};[{I|L}T]AE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EPC{I|L};{[QN]|[E{I|L}]|[KN]}S[HD]AYAT{I|L};{[QN]|[E{I|L}]|[KN]}S{[HG]|PP}EYAT{I|L};[{I|L}T]D[HD]PHAT{I|L} 6.207;6.2042;6.024;5.1652;5.0507;4.9464;4.4234;4.2483;4.2483;4.2342 +;-;-;-;-;-;-;-;-;- + 9740 + NaN NaN 816081.9 NaN 1896 1785 3682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3684 28.341 NaN 90803 35 0 15992 0.263 -1 LPENRKVMDM 10 42 416.8741960832101 1247.6007588498303 3 416.87396240234375 MULTI HCD FTMS 0 0 0 3682 7460.57275390625 0.3926976915751638 -11 0.1740093231201172 2 Oxidation (M) _LPENRKVM(Oxidation (M))DM_ ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 2.0860074813731053 0.46426213543441425 2 M 1 -1 14.604 0 0 1.1706 0 0 1098.5499603652584 0 1098.5499603652584 0 14.604093769761874 0 0 0 0 0 0 0 M 1.1706 + + 3 + NaN NaN 97421.4 NaN 1897 1785 3682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3685 28.344 NaN 82171 35 0 13082 0.261 -1 VCGGMFFF 8 36 490.70418210018033 979.3938112671607 2 490.7041931152344 MULTI HCD FTMS 0 0 0 3682 15040.783203125 0.7714106063435153 2 -0.026170730590820312 3 Carbamidomethyl (C),Oxidation (M) _VC(Carbamidomethyl (C))GGM(Oxidation (M))FFF_ ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101831.4 NaN 1898 1785 3682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3687 28.349 NaN 1013300 35 0 122630 0.327 + 27738 TATATNHVL 9 74 464.2484529403007 926.4823529474014 2 464.248291015625 MULTI HCD FTMS 0 0 0 3686 704926 0.7401322403424915 4 -0.07614898681640625 1 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 129.77232118876745 0.0006187813247758304 2 [TA]TATNHV{I|L} 9 0 + 83.342 0 0 8.9955 8.9955 96.979 0 0 0 27.389917747712644 58.877809162905024 27.389917747712644 28.817365755370403 0 2.4291746928241125 1.6989700043360187 2.0114393726401687 0.2614393726401688 + + [TA]TATNHV{I|L};[TA][PG][KQ]AT[PG];[PG]TA[KQ]AT[PG];[TA][HA]AAT{I|L}AT;[PG]TA[KQ]A[PG]T;[TA][HA]AA{I|L}TAT;[KP]AANTAT[PG];[PG]TA[KQ][PG]AT;[TA][PG]PAAQ[KS];[PG]TA[KQ][QP]T 8.9955;5.8851;4.6694;3.4971;3.0751;2.8961;2.7605;2.2057;1.9876;1.5007 +;-;-;-;-;-;-;-;-;- + 1079 NaN NaN 236599.6 NaN 1899 1786 3686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3688 28.354 NaN 75613 35 0 9909.6 0.261 -1 HPASDKIEAYM 11 26 639.295546380604 1276.576539828008 2 639.2951049804688 MULTI HCD FTMS 0 0 0 3686 50105.4375 0.6931153346365301 -2 0.025899887084960938 2 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 7.101721422024254 0.3877749288398915 2 HPA 3 -1 31.198 0 0 2.4439 0 0 0 968.4033495734024 968.4033495734024 14.999999999999996 0 0 0 0 0.5 0 0 0 HPA 2.4439 + + 14 + NaN NaN 105969.3 NaN 1900 1786 3686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3689 28.357 NaN 14325 35 0 4409.2 0.261 + 13959 KYRLVEEKN 9 13 589.8303058328029 1177.6460587324057 2 589.8304443359375 MULTI HCD FTMS 0 0 0 3686 11365.236328125 0.8500018660890142 2 -0.032886505126953125 3 Unmodified _KYRLVEEKN_ REV__ENSG00000129518|ENST00000250454|EAPP 1.4819007175156935 0.3397831423917744 2 KY 2 -1 20.969 0 0 1.7806 0 0 0 883.4677218072874 883.4677218072874 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.7806 + + 1 + NaN NaN 94176.2 NaN 1901 1786 3686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3691 28.362 NaN 1023600 35 0 161160 0.327 + 3020 EADPGQYRC 9 65 519.7191781000034 1037.4238032668068 2 519.7191772460938 MULTI HCD FTMS 0 0 0 3690 335196.96875 0.5167730664291421 9 -0.15973281860351562 1 Unmodified _EADPGQYRC_ ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-2|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG 75.76082778847304 0.0072241045649327805 2 {[CP]|[EA]}DPGQYRC 9 0 {[CP]|[EA]} + + 39.346 5.5855 2.7916 3.7926 3.7926 60.718 0 0 0 0 6.704328361272971 0 0 0 1.1593793813122062 0 0 0.3807196863200844 + + {[CP]|[EA]}DPGQYRC 3.7926 + + 470 + NaN NaN 247422.6 NaN 1902 1787 3690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3692 28.367 NaN 45625 35 0 7272.8 0.261 -1 VWGGSSSLNAM 11 23 562.7553756814775 NaN 0 562.75537109375 PEAK HCD FTMS 0 0 0 3690 6199.01611328125 0.404933647526526 3 -0.06306648254394531 2 Oxidation (M) _VWGGSSSLNAM(Oxidation (M))_ ENSG00000016391|ENST00000315251|CHDH 2.282774691075616 0.33564456907475565 2 A 1 -1 6.9897 0 0 0.62214 0 0 165.04412431041743 884.3971606467286 1049.441284957146 0 0 0 0 0 0 0 0 0 A 0.62214 + + 1 + NaN NaN 86540.7 NaN 1903 1787 3690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3693 28.37 NaN 164320 35 0 26522 0.264 -1 0 38 409.0004115637427 NaN 0 409.0003967285156 PEAK HCD FTMS 0 0 0 3690 16068.6904296875 0.6823993369739934 57 -0.8954410552978516 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.67214 0 0 137.6902290876522 528.2218721979124 665.9121012855646 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.67214 - 7 + NaN NaN 113030 NaN 1904 1787 3690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3694 28.374 NaN 32106 35 0 6042.7 0.261 + -1 GHHCHYNQ 8 21 526.7087315228121 1051.402910112424 2 526.708740234375 MULTI HCD FTMS 0 0 0 3690 9985.9931640625 0.5305338544976885 10 -0.18279457092285156 4 Carbamidomethyl (C) _GHHC(Carbamidomethyl (C))HYNQ_ REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|73|3|anti-sense 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88539.2 NaN 1905 1787 3690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3695 28.377 NaN 12301 35 0 4257.6 0.261 -1 DDNDTEATMAD 11 12 607.20979488603 NaN 0 607.3292236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _DDNDTEATM(Oxidation (M))AD_ ENSG00000109906|ENST00000335953|ZBTB16;ENST00000541602.5_1_11:113934022-114057819:+|nuORF;nc|ENSG00000109906|Q05516-2|ZBTB16 0.26902006276349055 0.3413570110244116 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85781.9 NaN 1906 1787 3690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3697 28.382 NaN 232840 35 0 24646 0.326 + 4221 EVCAFACKRKY 11 49 439.88624507875744 1316.6369058364724 3 439.8861083984375 MULTI HCD FTMS 0 0 0 3696 127787.7578125 0.22523793642103082 10 -0.17638778686523438 1 Unmodified _EVCAFACKRKY_ ENSG00000115568|ENST00000411696|ZNF142;ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142 4.11662792887243 0.40086653484894175 2 EEVHD{I|L}ERKY 10 7 EE + + 40.303 1.338 0.51844 3.0611 3.0611 60.123 0 0 0 0 35.698981786247685 0 0 0 0.5 0 0 0 EEVHD{I|L}ERKY 3.0611 - 116 + NaN NaN 128291.8 NaN 1907 1788 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3698 28.387 NaN 42375 35 0 10525 0.261 + -1 GYFVCCYFG 9 21 586.7308105535668 1171.4470681739335 2 586.731201171875 MULTI HCD FTMS 0 0 0 3696 24067.294921875 0.2912618295635205 7 -0.13235092163085938 2 2 Carbamidomethyl (C) _GYFVC(Carbamidomethyl (C))C(Carbamidomethyl (C))YFG_ REV__ENSG00000204195|ENST00000374521|AWAT1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102465.1 NaN 1908 1788 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3699 28.39 NaN 38330 35 0 6134.8 0.264 + -1 QMSCRLGVCMR 11 26 452.8699743886244 NaN 0 452.86871337890625 PEAK HCD FTMS 0 0 0 3696 12400.7470703125 0.5582253936633172 10 -0.17638778686523438 3 Carbamidomethyl (C),Oxidation (M) _QM(Oxidation (M))SC(Carbamidomethyl (C))RLGVCMR_ REV__ENST00000503674.5_1_5:250762-256532:+|nuORF 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103335.6 NaN 1909 1788 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3700 28.394 NaN 38307 35 0 8846.2 0.261 + -1 YYFMTCIT 8 30 549.7349956476784 NaN 0 549.7348022460938 PEAK HCD FTMS 0 0 0 3696 14171.982421875 0.876992942592992 -2 0.032886505126953125 4 Carbamidomethyl (C) _YYFMTC(Carbamidomethyl (C))IT_ REV__ENSG00000163629|ENST00000411767|PTPN13;REV__nc|ENSG00000163629|Q12923-2|PTPN13;REV__nc|ENSG00000163629|Q12923-3|PTPN13;REV__nc|ENSG00000163629|Q12923-4|PTPN13 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91348.5 NaN 1910 1788 3696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3702 28.399 NaN 242760 35 0 51008 0.327 -1 HPASDKIEAYM 11 43 426.53266453466773 1276.5761642042032 3 426.53253173828125 MULTI HCD FTMS 0 0 0 3701 105727.9765625 0.7785855534010611 -1 0.016649246215820312 1 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 20.871137199558856 0.2752315090543355 2 AY{M(Oxidation (M))|F} 3 -1 41.198 0 0 3.2272 0 0 877.4306086395533 0 877.4306086395533 0 34.20818753952375 0 0 0 1.5 0 0 0 AY{M(Oxidation (M))|F} 3.2272 + + 17 + NaN NaN 120445.8 NaN 1911 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3703 28.403 NaN 198240 35 0 17130 0.261 + 4040 ESAQDFASR 9 42 505.7307517488094 1009.4469505644188 2 505.73046875 MULTI HCD FTMS 0 0 0 3701 52662.16796875 0.9970072436860777 1 -0.026613235473632812 2 Unmodified _ESAQDFASR_ CLTC-VMP1|10|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;ENSG00000062716|ENST00000262291|VMP1;nc|ENSG00000062716|Q96GC9-2|VMP1;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|3|fusion;RPS6KB1-VMP1|4|fusion;VMP1-RPS6KB1|1|fusion 4.897010918128616 0.31389406404703984 2 A{M(Oxidation (M))|F}DQ 4 7 9.0165 0 0 0.89322 0 0 279.1543884371976 266.07843958072505 545.2328280179227 0 0 0 0 0 0 0 0 0 A{M(Oxidation (M))|F}DQ 0.89322 - 31 + NaN NaN 115585 NaN 1912 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3704 28.407 NaN 196650 35 0 59587 0.261 + 27937 TENTEENRRFY 11 35 486.8919105690502 1457.6539023073506 3 486.8917236328125 MULTI HCD FTMS 0 0 0 3701 76197.5234375 0.7334841320317357 -3 0.04953575134277344 3 Unmodified _TENTEENRRFY_ ENSG00000149925|ENST00000642816|ALDOA;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 8.28643447893445 0.3825791798255215 2 TEN 3 8 52.435 0 0 3.5972 0 0 0 1110.49630831017 1110.49630831017 45.44531259372398 0 0 0 0 0.5 1.6989700043360187 0 0.4247425010840047 + TEN 3.5972 + + 24 + NaN NaN 118786.7 NaN 1913 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3705 28.41 NaN 34377 35 0 4851.9 0.261 + 29676 VATDITSTR 9 25 482.25915181685366 962.5037507005073 2 482.2591857910156 MULTI HCD FTMS 0 0 0 3701 8208.4443359375 0.28334563065506563 -4 0.06262397766113281 4 Unmodified _VATDITSTR_ ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 5.731851221503515 0.3075653528928475 2 {[VA]|[{I|L}G]}{[ES]|[DT]|[{I|L}C]}{I|L} 5 4 8.4679 0 0 0.87978 0 0 0 460.2167147272094 460.2167147272094 8.467874862246559 0 0 0 0 0 0 0.5 0 + {[VA]|[{I|L}G]}{[ES]|[DT]|[{I|L}C]}{I|L} 0.87978 + + 2 + NaN NaN 92180.4 NaN 1914 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3706 28.414 NaN 49793 35 0 9981.4 0.261 + 25842 SLWKPLNY 8 24 510.778988334542 1019.5434237358841 2 510.7789001464844 MULTI HCD FTMS 0 0 0 3701 11132.44140625 0.6313290772950878 -7 0.0979156494140625 5 Unmodified _SLWKPLNY_ ENSG00000119285|ENST00000366582|HEATR1 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 100644.6 NaN 1915 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3707 28.417 NaN 47377 35 0 12485 0.261 -1 RKCCYGYC 8 21 526.7087315228121 1051.402910112424 2 527.210205078125 MULTI HCD FTMS 0 0 0 3701 4810.45166015625 0.31745914872089015 8 -0.14634132385253906 6 Carbamidomethyl (C) _RKC(Carbamidomethyl (C))CYGYC_ ENSG00000116032|ENST00000234389|GRIN3B 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87094.4 NaN 1916 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3708 28.42 NaN 12899 35 0 3348.2 0.261 + -1 TPYACYCEW 9 15 625.2369191598438 NaN 0 625.2369384765625 PEAK HCD FTMS 0 0 0 3701 1947.94970703125 0.29779398564387616 -13 0.1867847442626953 7 2 Carbamidomethyl (C) _TPYAC(Carbamidomethyl (C))YC(Carbamidomethyl (C))EW_ REV__ENSG00000179314|ENST00000317744|WSCD1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94878.8 NaN 1917 1789 3701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3710 28.426 NaN 196520 35 0 36061 0.326 + 22287 QPEANPSHL 9 43 496.7429702912898 991.4713876493796 2 496.7434997558594 MULTI HCD FTMS 0 0 0 3709 93299.6640625 0.5675581717854365 -5 0.08923721313476562 1 Unmodified _QPEANPSHL_ ENST00000261509.10_1_4:169846154-169847533:+|nuORF;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93|PALLD 21.536976647645854 0.1742816388551942 2 [QP]EAN[PS]H{I|L} 9 0 + 23.178 0 0 2.3377 2.3377 85.088 0 0 0 10.474921663574294 6.980071641894202 6.980071641894202 9.208187539523752 0 0.3054621874040891 0 0 0 + + [QP]EAN[PS]H{I|L};[QP]EAGG[PS]H{I|L};[H{I|L}][C(Carbamidomethyl (C))R]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 2.3377;1.409;0.29741 +;-;- + 80 + NaN NaN 109325.3 NaN 1918 1790 3709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3711 28.43 NaN 51559 35 0 7116.6 0.262 + 22222 QLWSVQGERGG 11 32 406.2085173222877 NaN 0 406.21923828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QLWSVQGERGG_ ENST00000343242.8_1_7:1580346-1581177:+|nuORF;ENST00000540816.1_7:1580595-1581193:+|nuORF 1.1097533296519684 0.33897209286470975 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86148.2 NaN 1919 1790 3709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3712 28.434 NaN 40270 35 0 7550.1 0.261 + -1 KQMDANSLAM 10 22 562.7553756814775 NaN 0 562.7548217773438 PEAK HCD FTMS 0 0 0 3709 2484.362548828125 0.16228413836833452 6 -0.09666633605957031 3 Oxidation (M) _KQMDANSLAM(Oxidation (M))_ REV__ENST00000545001.2_1_12:64732273-64732573:-|nuORF 3.2813086475875832 0.33737594360511275 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113975.7 NaN 1920 1790 3709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3714 28.443 NaN 231260 35 0 32591 0.264 + 70 ADATEAKNK 9 48 474.2435471167706 946.4725413003413 2 474.2431335449219 MULTI HCD FTMS 0 0 0 3713 119747.1953125 0.7965982151998532 1 -0.0256805419921875 1 Unmodified _ADATEAKNK_ ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF 39.94969957227396 0.06557568441294001 2 {[DA]|[EG]}TAEATR{I|L} 9 5 + 78.739 0 0 8.3192 8.3192 96.493 0 0 0 5.6424927368725974 67.76979068265724 5.6424927368725974 34.71971276399756 0 2.805462187404089 0 1.6861818737241734 0 {[DA]|[EG]}TAEATR{I|L};{[DA]|[EG]}T[RD]T[VG]{I|L} 8.3192;4.6509 -;- 128 NaN NaN 123663.7 NaN 1921 1791 3713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3715 28.446 NaN 107320 35 0 19046 0.261 + 26407 STAKIQIVR 9 39 508.3165866456608 1014.6186203581216 2 508.3165588378906 MULTI HCD FTMS 0 0 0 3713 40290.5078125 0.8253974833722063 -3 0.05666351318359375 2 Unmodified _STAKIQIVR_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 13.042465956692817 0.2476723265019929 2 {[MG]|[TS]}AK{I|L}Q 6 3 26.788 0 0 2.6402 0 0 0 383.2420748346313 383.2420748346313 25.819079913971574 0 0 0 0 0.28872548999643577 0 0 0 + {[MG]|[TS]}AK{I|L}Q 2.6402 + + 13 + NaN NaN 104667.6 NaN 1922 1791 3713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3716 28.449 NaN 45390 35 0 5528.9 0.261 + 9951 IEAEHQEHL 9 22 553.2673400761232 NaN 0 553.267578125 PEAK HCD FTMS 0 0 0 3713 19529.365234375 0.6225496803677133 7 -0.11972427368164062 3 Unmodified _IEAEHQEHL_ REV__ENSG00000162004|ENST00000345165|CCDC78;REV__ENST00000463539.5_1_16:775076-776367:-|nuORF;REV__ENST00000466708.5_1_16:774659-776662:-|nuORF;REV__ENST00000478979.5_1_16:774909-776367:-|nuORF;REV__ENST00000481804.5_1_16:775346-776019:-|nuORF;REV__ENST00000482878.5_1_16:774909-776367:-|nuORF;REV__ENST00000485091.5_1_16:774765-776367:-|nuORF;REV__nc|ENSG00000162004|A2IDD5-2|CCDC78;REV__nc|ENSG00000162004|A2IDD5-3|CCDC78;REV__nc|ENSG00000162004|A2IDD5-4|CCDC78;REV__nc|ENSG00000162004|A2IDD5-5|CCDC78;REV__nc|ENSG00000162004|A2IDD5-6|CCDC78;REV__nc|ENSG00000162004|A2IDD5|CCDC78 3.5964929083625545 0.27781873954207675 2 R 1 -1 3.9794 0 0 0.36028 0 0 512.2429188223651 433.1677340143188 945.410652836684 0 0 0 0 0 0 0 0 0 R 0.36028 - 2 + NaN NaN 89931.1 NaN 1923 1791 3713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3717 28.453 NaN 35664 35 0 6223.8 0.261 -1 MPSASMTRL 9 23 513.2414717806668 1024.4683906281334 2 513.2422485351562 MULTI HCD FTMS 0 0 0 3713 13922.619140625 0.3262876872346308 -43 0.6991710662841797 4 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 6.723162845929126 0.3000504726104499 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 3 -1 19.705 0 0 1.9234 0 0 0 690.3189791315061 690.3189791315061 19.7049999164468 0 0 0 0 0.5 0 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 1.9234 + + 10 + NaN NaN 101058.5 NaN 1924 1791 3713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3718 28.456 NaN 18879 35 0 3564.6 0.261 + 34000 YLWRLDLSH 9 14 601.8197750544056 1201.624997175611 2 601.8198852539062 MULTI HCD FTMS 0 0 0 3713 13230.939453125 0.7162740146533834 -6 0.10263824462890625 5 Unmodified _YLWRLDLSH_ ENST00000489895.5_1_3:52512001-52514911:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94806 NaN 1925 1791 3713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3719 28.459 NaN 12220 35 0 4466 0.261 -1 AWRWRCCLH 9 12 644.3036518561685 NaN 0 644.3035278320312 PEAK HCD FTMS 0 0 0 3713 2117.60302734375 0.1970954754740634 11 -0.1933269500732422 6 Carbamidomethyl (C) _AWRWRC(Carbamidomethyl (C))CLH_ ENST00000566567.1_1_9:139000642-139000753:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97263.4 NaN 1926 1791 3713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3721 28.465 NaN 113350 35 0 34122 0.327 + 25967 SPDGSDPKL 9 33 458.22478288850095 914.4350128438019 2 458.22467041015625 MULTI HCD FTMS 0 0 0 3720 39031.37890625 0.08988004579621477 14 -0.2547035217285156 1 Unmodified _SPDGSDPKL_ ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48 10.073929032068715 0.27331982688540024 2 Y 1 9 0.71334 0 0 0.078009 0 0 311.72335620493317 436.6395662897094 748.3629224946426 0 0 0 0 0 0 0 0 0 Y 0.078009 - 2 + NaN NaN 103648.3 NaN 1927 1792 3720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3722 28.469 NaN 21188 35 0 4500.1 0.261 + -1 CCIFPCKC 8 21 572.7257690429688 NaN 0 572.7257690429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))IFPC(Carbamidomethyl (C))KC(Carbamidomethyl (C))_ REV__nc|ENSG00000131507|Q9BT67-2|NDFIP1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88679.3 NaN 1928 1792 3720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3724 28.475 NaN 1820800 35 0 154730 0.327 + 9240 HPLSDHEATL 10 93 560.275140829622 1118.535728726044 2 560.2752685546875 MULTI HCD FTMS 0 0 0 3723 928639.3125 0.148824695664298 13 -0.24463462829589844 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 166.44778350782605 5.805597275734801E-11 2 HP{I|L}SDHEAT{I|L} 10 0 + 73.692 0 0 6.5883 6.5883 85.064 0 0 0 27.203883567925814 16.56173420760375 16.56173420760375 0.22878745280337398 0 2.5189301784845295 0 2.274227503252014 0 + + HP{I|L}SDHEAT{I|L};H{I|L}PSDHEAT{I|L};{I|L}HPSDHEAT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W[W{M(Oxidation (M))|F}]PH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W[W{M(Oxidation (M))|F}]{I|L}PH;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}W[W{M(Oxidation (M))|F}]P{I|L}H;H{I|L}{[WT]|[RM]}[YV]{M(Oxidation (M))|F}[PG];HPP[HN][HN]{I|L}[PG];{I|L}H{[WT]|[RM]}[YV]{M(Oxidation (M))|F}[PG];HPP[HN][HN]A[VP] 6.5883;6.5678;6.2616;1.8744;1.5522;1.4433;1.101;1.0121;0.7948;0.74302 +;-;-;-;-;-;-;-;-;- + 3680 + NaN NaN 354880.3 NaN 1929 1793 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3725 28.479 NaN 302310 35 0 75926 0.262 + 27739 TATATNHVL 9 45 464.2484529403007 926.4823529474014 2 464.2481384277344 MULTI HCD FTMS 0 0 0 3723 152564.875 0.1601844487667105 11 -0.20105743408203125 2 Unmodified _TATATNHVL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 51.629811660486645 0.02929079705179888 2 [TA]TAT 5 4 51.7 0 0 5.5802 0 0 0 478.24265466861567 478.24265466861567 39.39240487828427 0 0 0 0 1.2887254899964358 1.6989700043360187 0.5 0 + [TA]TAT 5.5802 + + 65 + NaN NaN 143475.5 NaN 1930 1793 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3726 28.483 NaN 50770 35 0 6827.2 0.261 -1 HPASDKIEAYM 11 18 639.295546380604 1276.576539828008 2 639.2955932617188 MULTI HCD FTMS 0 0 0 3723 38911.61328125 0.5382696411079304 5 -0.08397483825683594 3 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 7.101721422024254 0.3877749288398915 2 HPA 3 -1 31.198 0 0 2.4439 0 0 0 968.4051607721311 968.4051607721311 24.20818753952375 0 0 0 0 0.5 0 0 0 HPA 2.4439 + + 9 + NaN NaN 96028.2 NaN 1931 1793 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3727 28.486 NaN 44470 35 0 10587 0.264 + 846 AWHGQNRS 8 31 478.2284433555734 NaN 0 478.2283630371094 PEAK HCD FTMS 0 0 0 3723 7373.98046875 1 0 0 4 Unmodified _AWHGQNRS_ REV__ENSG00000073169|ENST00000380903|SELENOO;REV__ENST00000380903.6_1_22:50639465-50655786:+|nuORF;REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95695.6 NaN 1932 1793 3723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3729 28.491 NaN 151200 35 0 24643 0.326 -1 0 27 547.9132983606831 1640.7180656822493 3 547.9132080078125 MULTI HCD FTMS 0 0 0 3728 50172.640625 0.5091109007684904 -3 0.052333831787109375 1 NaN NaN 2 YGGSS 5 -1 54.821 0 0 3.3413 0 0 0 1186.5263913838492 1186.5263913838492 47.830918867322296 0 0 0 0 0.9247425010840047 0 0.7614393726401688 0 YGGSS 3.3413 - 22 + NaN NaN 102537.3 NaN 1933 1794 3728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3730 28.496 NaN 81379 35 0 9660.8 0.261 -1 SPIKDQPVM 9 32 515.765683188719 1029.5168134442379 2 515.765380859375 MULTI HCD FTMS 0 0 0 3728 38009.6015625 0.6360498158483865 -4 0.06573486328125 2 Oxidation (M) _SPIKDQPVM(Oxidation (M))_ ENSG00000112039|ENST00000229769|FANCE 24.990960013464015 0.14443998892849796 2 PV{M(Oxidation (M))|F} 3 -1 30.177 0 0 2.9312 0 0 668.350048162791 0 668.350048162791 0 14.719712763997562 0 0 0 1 0 0 0 PV{M(Oxidation (M))|F} 2.9312 + + 20 + NaN NaN 91036.2 NaN 1934 1794 3728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3731 28.499 NaN 59741 35 0 7329.9 0.263 + 23804 RRQPLTTHSN 10 45 403.88624485915966 NaN 0 403.8944396972656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RRQPLTTHSN_ REV__ENSG00000160208|ENST00000340648|RRP1B;REV__nc|ENSG00000160208|Q14684-2|RRP1B 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111029 NaN 1935 1794 3728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3732 28.503 NaN 71274 35 0 30282 0.261 + 2080 DESVDYVPM 9 19 527.7236145323193 1053.4326761314385 2 527.7247924804688 MULTI HCD FTMS 0 0 0 3728 15860.4384765625 0.7496753855514928 -4 0.06573486328125 4 Unmodified _DESVDYVPM_ ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 117716.4 NaN 1936 1794 3728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3733 28.506 NaN 32129 35 0 5126.1 0.261 + 32141 VYSKTQQSF 9 22 544.2745296151146 1086.534506297029 2 544.2738037109375 MULTI HCD FTMS 0 0 0 3728 9175.0341796875 0.4407908589534559 -5 0.09234809875488281 5 Unmodified _VYSKTQQSF_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 9.38312468134398 0.279288223203164 2 P{M(Oxidation (M))|F} 2 8 25.969 0 0 2.3901 0 0 824.4009890335435 0 824.4009890335435 0 25.969100130080562 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 2.3901 - 4 NaN NaN 99506.8 NaN 1937 1794 3728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3734 28.509 NaN 35632 35 0 8781 0.261 + 23071 REFCYAME 8 27 524.7142521542727 NaN 0 524.7462768554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _REFCYAME_ ENSG00000022567|ENST00000517878|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84020.1 NaN 1938 1794 3728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3736 28.515 NaN 297500 35 0 50680 0.326 + 2993 EAAGEVRAM 9 45 467.22652216297143 932.4384913927429 2 467.22625732421875 MULTI HCD FTMS 0 0 0 3735 144409.21875 0.3590615329926165 -4 0.07568740844726562 1 Unmodified _EAAGEVRAM_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 32.78568957990786 0.09846250359632436 2 {[CP]|[EA]}AGEVRAM 9 0 + 54.901 0 0 5.8879 5.8879 86.406 0 0 0 26.484484532805155 14.973024840566467 14.973024840566467 6.522496736287451 0 0.6307196863200843 0 0 0 + + {[CP]|[EA]}AGEVRAM;{[CP]|[EA]}QEVRAM 5.8879;5.1884 +;- + 203 + NaN NaN 125444.1 NaN 1939 1795 3735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3738 28.522 NaN 130530 35 0 25363 0.327 -1 HPASDKIEAYM 11 34 426.53266453466773 1276.5761642042032 3 426.5323791503906 MULTI HCD FTMS 0 0 0 3737 50633.50390625 0.3728673898925724 6 -0.1100616455078125 1 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 13.51866281300042 0.33929385944539686 2 AY{M(Oxidation (M))|F} 3 -1 33.812 0 0 2.6487 0 0 877.4304865692408 0 877.4304865692408 0 28.327731244245342 0 0 0 1 0 0 0 AY{M(Oxidation (M))|F} 2.6487 + + 14 + NaN NaN 106408.4 NaN 1940 1796 3737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3739 28.527 NaN 90702 35 0 12603 0.261 + 32648 WMRLPWQIVK 10 29 452.92450697261603 1355.7516915180481 3 453.2510986328125 MULTI HCD FTMS 0 0 0 3737 1499.177001953125 0.5302553522456216 -2 0.030931472778320312 2 Unmodified _WMRLPWQIVK_ REV__ENST00000419886.6_1_19:12129079-12146462:-|nuORF 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104964.5 NaN 1941 1796 3737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3740 28.53 NaN 84170 35 0 11737 0.261 + 4054 ESGGASVISTR 11 28 532.2726723937008 1062.5307918542014 2 532.2724609375 MULTI HCD FTMS 0 0 0 3737 24087.201171875 0.16686780768744502 -5 0.08326530456542969 3 Unmodified _ESGGASVISTR_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2 11.517880264261096 0.3567267433909682 2 SV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6 5 23.193 0 0 2.1828 0 0 401.1540789230457 0 401.1540789230457 0 -1.020599913279625 -1.020599913279625 0 0 0.3807196863200844 0 0 0 + SV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.1828 + + 47 + NaN NaN 92498.1 NaN 1942 1796 3737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3741 28.533 NaN 69889 35 0 8040.3 0.261 + 31034 VSSKFQKR 8 22 490.2878304144917 978.5611078957834 2 490.287841796875 MULTI HCD FTMS 0 0 0 3737 15735.6943359375 1 0 0 4 Unmodified _VSSKFQKR_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B 2.0597508629832335 0.5389364538378849 2 S[PA] 3 7 8.9524 0 0 0.91486 0 0 705.4294300763687 0 705.4294300763687 0 6.478174818886375 0 0 0 0 0 0 0 S[PA] 0.91486 - 3 NaN NaN 106379.8 NaN 1943 1796 3737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3742 28.537 NaN 52078 35 0 8270.6 0.261 + 33454 YGVGWTATT 9 25 478.2284433555734 NaN 0 478.21832275390625 PEAK HCD FTMS 0 0 0 3737 4409.7451171875 0.5980142117104112 2 -0.03645896911621094 5 Unmodified _YGVGWTATT_ REV__ENST00000445902.2_1_6:33238004-33239525:-|nuORF;REV__ENST00000463486.5_1_6:33238004-33239525:-|nuORF;REV__ENST00000478934.5_1_6:33238004-33239739:-|nuORF 4.75600775471527 0.27219989241163056 2 A 1 -1 10.485 0 0 1.0985 0 0 734.3544869535313 146.02791773013908 880.3824046836703 0 0 0 0 0 0.5 0 0 0 A 1.0985 + + 2 + NaN NaN 85205.5 NaN 1944 1796 3737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3743 28.54 NaN 36049 35 0 9942.6 0.261 -1 TVRSCDSVGGS 11 25 562.7553756814775 NaN 0 562.7546997070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _TVRSC(Carbamidomethyl (C))DSVGGS_ ENST00000556818.1_1_14:64970443-64970746:+|nuORF 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86492.1 NaN 1945 1796 3737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3745 28.545 NaN 130810 35 0 30019 0.327 + 19566 NSSKDVAVM 9 36 475.7343696319455 949.4541863306911 2 475.73419189453125 MULTI HCD FTMS 0 0 0 3744 83094.6484375 0.8753819672606075 -2 0.0306396484375 1 Unmodified _NSSKDVAVM_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 36.506200033944 0.08138327636155518 2 AVM 3 6 33.812 0 0 3.5612 0 0 630.3002796857437 0 630.3002796857437 0 19.10728139283883 0 0 0 1 0 0 0 + AVM 3.5612 + + 15 NaN NaN 102001 NaN 1946 1797 3744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3746 28.55 NaN 229700 35 0 55355 0.261 + 27938 TENTEENRRFY 11 33 486.8919105690502 1457.6539023073506 3 486.89178466796875 MULTI HCD FTMS 0 0 0 3744 69348.8125 0.667557831925029 5 -0.08699989318847656 2 Unmodified _TENTEENRRFY_ ENSG00000149925|ENST00000642816|ALDOA;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 8.28643447893445 0.3825791798255215 2 TEN 3 8 48.188 0 0 3.3058 0 0 0 1110.4952884451823 1110.4952884451823 41.197887582883936 0 0 0 0 0.5 1.6989700043360187 0 0 + TEN 3.3058 + + 22 + NaN NaN 112258.6 NaN 1947 1797 3744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3747 28.553 NaN 57065 35 0 10072 0.261 + 35215 YVLPDQQKV 9 37 545.3008092179301 1088.5870655026602 2 545.300537109375 MULTI HCD FTMS 0 0 0 3744 13061.7841796875 0.5316566918599996 -4 0.07057762145996094 3 Unmodified _YVLPDQQKV_ REV__ENSG00000130377|ENST00000588485|ACSBG2;REV__ENST00000591741.5_1_19:6161567-6190665:+|nuORF;REV__nc|ENSG00000130377|Q5FVE4-2|ACSBG2;REV__nc|ENSG00000130377|Q5FVE4-3|ACSBG2;REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 13.042465956692817 0.2476723265019929 2 KV 2 -1 22.831 0 0 2.0973 0 0 843.411912986525 0 843.411912986525 0 3.36696871556164 0 0 0 0.4247425010840047 0 0 0 KV 2.0973 + + 3 NaN NaN 101118.4 NaN 1948 1797 3744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3749 28.559 NaN 482450 35 0 56760 0.326 + 8237 GSLHGSPSIH 10 63 496.2514851225683 990.4884173119366 2 496.7434997558594 MULTI HCD FTMS 0 0 0 3748 30590.365234375 0.5402583951625795 -4 0.06739044189453125 1 Unmodified _GSLHGSPSIH_ ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-7|MAP7 14.838274106304384 0.3723198072575719 2 EANPS[H{I|L}] 7 6 26.107 0 0 2.6357 0 0 224.12960491134908 0 224.12960491134908 0 12.919110406260897 0 0 0 0 0 0.5796896906561032 0 EANPS[H{I|L}] 2.6357 - 147 + NaN NaN 171551.5 NaN 1949 1798 3748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3750 28.563 NaN 33887 35 0 4641 0.261 + 29677 VATDITSTR 9 29 482.25915181685366 962.5037507005073 2 482.258544921875 MULTI HCD FTMS 0 0 0 3748 15444.1708984375 0.5331142131284966 5 -0.10030174255371094 2 Unmodified _VATDITSTR_ ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 2.9952420565917617 0.3283108881486655 2 T 1 8 3.9794 0 0 0.41344 0 0 499.26520807531045 359.1694735162719 858.4346815915824 0 0 0 0 0 0 0 0 0 + T 0.41344 + + 1 + NaN NaN 86110.5 NaN 1950 1798 3748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3751 28.567 NaN 61575 35 0 10886 0.261 + -1 RRQPCGAA 8 31 458.2337708871913 NaN 0 458.22418212890625 PEAK HCD FTMS 0 0 0 3748 1845.3419189453125 0.37082476777949935 2 -0.03679084777832031 3 Carbamidomethyl (C) _RRQPC(Carbamidomethyl (C))GAA_ REV__ENST00000445747.1_1_X:118011894-118012802:-|nuORF 0.7936320650641473 0.38822285293237185 2 V 1 -1 2.4743 0 0 0.27057 0 0 439.19488444840766 373.16526209049067 812.3601465388983 0 0 0 0 0 0 0 0 0 V 0.27057 - 1 + NaN NaN 92018.4 NaN 1951 1798 3748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3752 28.57 NaN 40647 35 0 5262.4 0.261 + 25843 SLWKPLNY 8 21 510.778988334542 1019.5434237358841 2 510.7782897949219 MULTI HCD FTMS 0 0 0 3748 6957.53564453125 0.3945670494383698 2 -0.03679084777832031 4 Unmodified _SLWKPLNY_ ENSG00000119285|ENST00000366582|HEATR1 2.577480529830294 0.5381683276125971 2 {I|L} 1 7 3.9794 0 0 0.39031 0 0 605.6426191477966 297.7977694147094 903.4403885625061 0 0 0 0 0 0 0 0 0 + {I|L} 0.39031 + + 1 + NaN NaN 102771.9 NaN 1952 1798 3748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3753 28.573 NaN 16766 35 0 4969.8 0.261 -1 SERKVLNKY 9 13 589.8303058328029 1177.6460587324057 2 589.830078125 MULTI HCD FTMS 0 0 0 3748 7268.78076171875 0.5436294532972697 14 -0.2499713897705078 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SERKVLNKY_ ENSG00000105248|ENST00000262962|YJU2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91551.9 NaN 1953 1798 3748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3754 28.577 NaN 34943 35 0 8914.4 0.261 -1 HTRMRMFM 8 23 563.2568969726562 NaN 0 563.2568969726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _HTRM(Oxidation (M))RMFM_ ENSG00000102221|ENST00000614628|JADE3 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91740.7 NaN 1954 1798 3748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3756 28.582 NaN 92556 35 0 16563 0.327 + 34156 YPDDRTSRTL 10 40 408.5387587546182 1222.5944468640546 3 408.53851318359375 MULTI HCD FTMS 0 0 0 3755 23190.33984375 0.8305296132326785 4 -0.07697296142578125 1 Unmodified _YPDDRTSRTL_ ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000075391|Q9UJF2|RASAL2;RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant 4.5288652416199255 0.4513317009562028 2 YPD 3 7 29.45 0 0 2.4088 0 0 0 844.4272141456087 844.4272141456087 23.680540824916392 0 0 0 0 0.3252574989159953 0 0 0 + YPD 2.4088 + + 33 + NaN NaN 114975 NaN 1955 1799 3755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3757 28.587 NaN 41187 35 0 4851.4 0.261 + -1 HPTIHMPLC 9 27 553.2673400761232 NaN 0 553.2664794921875 PEAK HCD FTMS 0 0 0 3755 10331.767578125 0.3293521589771767 15 -0.24837303161621094 2 Carbamidomethyl (C) _HPTIHMPLC(Carbamidomethyl (C))_ REV__ENST00000556674.1_1_14:76447956-76448028:-|nuORF 1.844237919475145 0.28630992268396543 2 P 1 -1 5.4846 0 0 0.49656 0 0 137.05425915439633 867.3779390924436 1004.43219824684 0 0 0 0 0 0 0 0 0 P 0.49656 + + 1 + NaN NaN 89657.6 NaN 1956 1799 3755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3758 28.59 NaN 475850 35 0 45557 0.264 -1 LCEKYLQHI 9 69 401.87790372022243 NaN 0 401.8780212402344 PEAK HCD FTMS 0 0 0 3755 1836.79736328125 0.24490349297407185 -6 0.10730361938476562 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))EKYLQHI_ ENST00000405709.6_1_7:110303508-110303604:-|nuORF 9.38312468134398 0.24977752951804 2 K{I|L}YH 4 -1 15.745 0 0 1.9639 0 0 129.3468074780855 128.07175623111564 257.4185637092012 0 0 0 0 0 0 0 0 0.3807196863200844 K{I|L}YH 1.9639 - 37 + NaN NaN 154497 NaN 1957 1799 3755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3760 28.596 NaN 279540 35 0 30625 0.327 -1 MLDILMDYCH 10 68 442.85589689644263 1325.545861289528 3 442.85601806640625 MULTI HCD FTMS 0 0 0 3759 79288.3828125 0.7568276145340783 2 -0.03681182861328125 1 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 8.97624648632007 0.42715123575657504 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[{I|L}P]PS 7 -1 42.012 0 0 3.1694 0 0 0 569.1559436472029 569.1559436472029 24.591379162015553 0 0 0 0 1 1.3979400086720375 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[{I|L}P]PS 3.1694 - 113 NaN NaN 120312.6 NaN 1958 1800 3759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3761 28.6 NaN 45990 35 0 6483.1 0.261 -1 MPSASMTRL 9 32 513.2414717806668 1024.4683906281334 2 513.241455078125 MULTI HCD FTMS 0 0 0 3759 13664.5234375 0.32023900851927867 -34 0.5584373474121094 2 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 5.731851221503515 0.3075653528928475 2 KS[EP] 4 -1 18.188 0 0 1.7753 0 0 565.244920799025 0 565.244920799025 0 18.187587626244124 0 0 0 0 0 0.5 0 KS[EP] 1.7753 - 5 NaN NaN 89898.9 NaN 1959 1800 3759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3762 28.604 NaN 65039 35 0 6510.1 0.261 + -1 MVSLLLCE 8 27 490.74350934107264 979.4724657489453 2 490.7435607910156 MULTI HCD FTMS 0 0 0 3759 9002.822265625 0.5225620960142644 1 -0.020053863525390625 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VSLLLC(Carbamidomethyl (C))E_ REV__ENSG00000187612|ENST00000344514|OR5W2;REV__OR5W2|p.A108S|1|0.22|ENSG00000187612|chr11:55914261-55914261|C/A|missense_variant 2.302733041254933 0.5385759549224092 2 W{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 1.0677 0 0 559.3085194318375 0 559.3085194318375 0 3.4678748622465623 0 0 0 0 0 0 0 W{[ES]|[DT]|[{I|L}C]} 1.0677 - 6 NaN NaN 90621.5 NaN 1960 1800 3759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3763 28.607 NaN 89822 35 0 22967 0.261 + 4302 EVPNKIINR 9 27 541.8194865488493 1081.6244201644986 2 541.8190307617188 MULTI HCD FTMS 0 0 0 3759 31556.138671875 0.40718152414372577 -6 0.10418128967285156 4 Unmodified _EVPNKIINR_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 6.723162845929126 0.3000504726104499 2 EV 2 7 20.969 0 0 1.9387 0 0 0 850.4892165792821 850.4892165792821 13.979400086720375 0 0 0 0 0 0 0 0 + EV 1.9387 + + 2 + NaN NaN 99432.6 NaN 1961 1800 3759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3764 28.61 NaN 24974 35 0 3917.9 0.261 + -1 LLYMPKKFM 9 20 601.8197750544056 1201.624997175611 2 602.3217163085938 MULTI HCD FTMS 0 0 0 3759 9421.9677734375 0.7305327028663965 2 -0.03681182861328125 5 2 Oxidation (M) _LLYM(Oxidation (M))PKKFM(Oxidation (M))_ REV__ENST00000372004.7_1_20:46254139-46254205:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91136.1 NaN 1962 1800 3759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3766 28.616 NaN 805120 35 0 70287 0.327 + 9241 HPLSDHEATL 10 68 560.275140829622 1118.535728726044 2 560.2750244140625 MULTI HCD FTMS 0 0 0 3765 386625.375 0.061960982047559066 21 -0.3266315460205078 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 144.35026110057638 3.418863920185984E-07 2 A[MD]H{M(Oxidation (M))|F}AT{I|L} 8 5 54.29 0 0 4.8536 0 0 214.13133437324376 0 214.13133437324376 0 22.30249918074449 0 0 0 0.805462187404089 0 1.3494850021680094 0 A[MD]H{M(Oxidation (M))|F}AT{I|L} 4.8536 - 1163 NaN NaN 208313.3 NaN 1963 1801 3765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3767 28.62 NaN 172290 35 0 34892 0.261 + 2494 DSAPVETPR 9 40 486.2435912363349 970.4726295394698 2 486.2433776855469 MULTI HCD FTMS 0 0 0 3765 76587.1015625 1 0 0 2 Unmodified _DSAPVETPR_ ENSG00000100292|ENST00000216117|HMOX1 24.990960013464015 0.14443998892849796 2 {[DS]|[MA]|[CV]|TT}A[VP]ET[RP] 9 0 + 34.115 0 0 3.5153 3.5153 89.089 0 0 0 27.125299705980204 4.762036441594198 4.762036441594198 34.11499974934039 0 0.8494850021680094 0 0.4247425010840047 0 + + {[DS]|[MA]|[CV]|TT}A[VP]ET[RP] 3.5153 + + 35 + NaN NaN 105947.9 NaN 1964 1801 3765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3768 28.624 NaN 14625 35 0 4157.9 0.261 + 8807 HIPSYITMDSN 11 15 639.295546380604 1276.576539828008 2 639.295166015625 MULTI HCD FTMS 0 0 0 3765 4487.1435546875 0.062071267344375056 13 -0.2148571014404297 3 Unmodified _HIPSYITMDSN_ sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2 0.4545168274142398 0.41692731010159206 2 H 1 10 4.6041 0 0 0.36066 0 0 656.8764188336705 479.62006555728755 1136.4964843909581 0 0 0 0 0 0 0 0 0 + H 0.36066 + + 1 + NaN NaN 87357 NaN 1965 1801 3765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3769 28.627 NaN 43202 35 0 10204 0.261 -1 RMMRSMRL 8 28 556.777790482829 NaN 0 556.7416381835938 PEAK HCD FTMS 0 0 0 3765 2033.4822998046875 0.4251687118380775 3 -0.060237884521484375 4 2 Oxidation (M) _RM(Oxidation (M))MRSM(Oxidation (M))RL_ nc|ENSG00000168528|Q96SA4-4|SERINC2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86700.2 NaN 1966 1801 3765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3771 28.632 NaN 411800 35 0 59742 0.327 + 8246 GSSPVFNQR 9 56 496.2514851225683 990.4884173119366 2 496.2514343261719 MULTI HCD FTMS 0 0 0 3770 121796.1015625 0.9762428937801536 1 -0.026699066162109375 1 Unmodified _GSSPVFNQR_ ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L 29.081581746732265 0.1154664336125038 2 [SG]SPV{M(Oxidation (M))|F} 6 3 23.457 0 0 2.3682 0 0 0 413.1894625299438 413.1894625299438 10.54958152537612 0 0 0 0 0.6307196863200843 0 0.5 0 + [SG]SPV{M(Oxidation (M))|F} 2.3682 + + 92 + NaN NaN 140132.4 NaN 1967 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3772 28.637 NaN 141540 35 0 20617 0.261 -1 0 27 547.9132983606831 1640.7180656822493 3 547.9129638671875 MULTI HCD FTMS 0 0 0 3770 58056.38671875 0.5891087048549508 5 -0.11058235168457031 2 NaN NaN 2 YGGSS 5 -1 55.573 0 0 3.3871 0 0 0 1186.5256072667494 1186.5256072667494 48.58349385648225 0 0 0 0 1 0 0.7614393726401688 0 YGGSS 3.3871 - 27 + NaN NaN 112166.6 NaN 1968 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3773 28.64 NaN 72726 35 0 9664.9 0.261 -1 SPIKDQPVM 9 34 515.765683188719 1029.5168134442379 2 515.7655029296875 MULTI HCD FTMS 0 0 0 3770 20932.736328125 0.35028683646719655 4 -0.08705711364746094 3 Oxidation (M) _SPIKDQPVM(Oxidation (M))_ ENSG00000112039|ENST00000229769|FANCE 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 2.0628 0 0 864.4715386413067 0 864.4715386413067 0 21.237125054200234 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 2.0628 + + 3 + NaN NaN 115215 NaN 1969 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3774 28.644 NaN 113300 35 0 17030 0.262 + -1 PLCTAGHCENF 11 38 416.8424676291864 NaN 0 416.8424072265625 PEAK HCD FTMS 0 0 0 3770 9773.9208984375 0.29995596188134294 73 -1.1525077819824219 4 Carbamidomethyl (C) _PLC(Carbamidomethyl (C))TAGHCENF_ REV__ENSG00000066279|ENST00000367409|ASPM;REV__nc|ENSG00000066279|Q8IZT6-2|ASPM 1.214830529360525 0.33867401910978034 2 N 1 -1 6.9897 0 0 0.84044 0 0 485.70423960231966 228.90442835025627 714.608667952576 0 0 0 0 0 0 0 0 0 N 0.84044 + + 2 + NaN NaN 116203.9 NaN 1970 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3775 28.647 NaN 52309 35 0 21300 0.261 + -1 FNLEEMVD 8 18 527.7236145323193 1053.4326761314385 2 527.7243041992188 MULTI HCD FTMS 0 0 0 3770 12099.4306640625 0.5719038197738735 4 -0.08705711364746094 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))FNLEEM(Oxidation (M))VD_ REV__ENST00000557679.5_1_14:74371659-74389215:+|nuORF 0.7936320650641473 0.540814922690045 2 W 1 -1 3.9794 0 0 0.37776 0 0 526.6980702738198 337.6246737115844 864.3227439854043 0 0 0 0 0 0 0 0 0 W 0.37776 - 3 + NaN NaN 97685.7 NaN 1971 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3776 28.65 NaN 27349 35 0 4580.1 0.261 + 19646 NVGDWLIF 8 19 482.2504693982347 NaN 0 482.2581787109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NVGDWLIF_ ENSG00000155096|ENST00000337198|AZIN1 0.7936320650641473 0.38822285293237185 2 G 1 7 3.9794 0 0 0.41345 0 0 727.3137001716664 175.12307153873283 902.4367717103992 0 0 0 0 0 0 0 0 0 + G 0.41345 + + 1 + NaN NaN 83604.6 NaN 1972 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3777 28.654 NaN 36453 35 0 8124.5 0.261 + -1 PPLHCCRW 8 24 563.2578125 NaN 0 563.2578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C) _PPLHC(Carbamidomethyl (C))C(Carbamidomethyl (C))RW_ REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97721.5 NaN 1973 1802 3770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3779 28.659 NaN 423150 35 0 66298 0.326 + 2994 EAAGEVRAM 9 57 467.22652216297143 932.4384913927429 2 467.226318359375 MULTI HCD FTMS 0 0 0 3778 256511.890625 0.6377955193989087 4 -0.08388328552246094 1 Unmodified _EAAGEVRAM_ ENST00000256015.4_1_12:92539535-92539610:-|nuORF 99.75527289724121 0.004270341300239591 2 {[CP]|[EA]}AGEVRAM 9 0 + 69.58 0 0 7.4621 7.4621 89.101 0 0 0 41.16348636101064 14.973024840566467 14.973024840566467 6.355129762210922 0 1.7491348669726232 0 0.3494850021680094 0 + + {[CP]|[EA]}AGEVRAM;{[CP]|[EA]}QEVRAM;{[CP]|[EA]}GVEARAM;{[DA]|[EG]}AVEARAM;{[CP]|[EA]}A[DV]ARAM;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VEARAM;{[CP]|[EA]}AGEVM{[QV]|[N{I|L}]|[RA]|[KV]};{[CP]|[EA]}A{[RE]|[WV]}[VG]AM;{[CP]|[EA]}QEVM{[QV]|[N{I|L}]|[RA]|[KV]};[TA][PS]EARAM 7.4621;6.7806;5.3813;5.0471;4.9395;4.6752;4.5874;4.187;3.9058;2.7134 +;-;-;-;-;-;-;-;-;- + 434 + NaN NaN 135502.9 NaN 1974 1803 3778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3780 28.664 NaN 35847 35 0 4366 0.261 + 25661 SHPVSGTPM 9 27 456.71612126703855 911.4176896008771 2 456.71563720703125 MULTI HCD FTMS 0 0 0 3778 15242.6044921875 0.7310907802737918 1 -0.016780853271484375 2 Unmodified _SHPVSGTPM_ REV__ENSG00000186818|ENST00000695418|LILRB4;REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4;REV__nc|ENSG00000186818|Q8NHJ6-3|LILRB4;REV__nc|ENSG00000186818|Q8NHJ6|LILRB4 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89149.1 NaN 1975 1803 3778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3781 28.667 NaN 30783 35 0 5809.2 0.261 + -1 TCCAHCHG 8 19 473.1596054979829 944.3046580627658 2 473.1592102050781 MULTI HCD FTMS 0 0 0 3778 9039.5048828125 0.3434502355093987 8 -0.13644790649414062 3 2 Carbamidomethyl (C) _TC(Carbamidomethyl (C))CAHC(Carbamidomethyl (C))HG_ REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90939.3 NaN 1976 1803 3778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3782 28.67 NaN 53129 35 0 15999 0.261 -1 RFDHEMFG 8 23 527.7236145323193 1053.4326761314385 2 527.7227783203125 MULTI HCD FTMS 0 0 0 3778 11364.2490234375 0.5371539873086252 5 -0.10402870178222656 4 Oxidation (M) _RFDHEM(Oxidation (M))FG_ ENSG00000131781|ENST00000254090|FMO5;nc|ENSG00000131781|P49326-2|FMO5;nc|ENSG00000131781|P49326-3|FMO5 0.6014990680409731 0.5410999795511968 2 R 1 -1 6.9897 0 0 0.66352 0 0 747.377574668351 146.92649255924064 894.3040672275916 0 0 0 0 0 0 0 0 0 R 0.66352 + + 2 + NaN NaN 83531.8 NaN 1977 1803 3778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3784 28.676 NaN 292960 35 0 51046 0.327 + 19384 NPEHASVAM 9 44 478.2188183615638 954.4230837899277 2 478.2185363769531 MULTI HCD FTMS 0 0 0 3783 203834.078125 1 0 0 1 Unmodified _NPEHASVAM_ ENSG00000102317|ENST00000376759|RBM3;ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF 53.832793166522166 0.026208976789938845 2 SVAM 4 5 56.063 0 0 5.874 0 0 548.2321644513687 0 548.2321644513687 0 38.98423633616338 0 0 0 1.7887254899964358 0 0.7742275032520141 0 + SVAM 5.874 + + 82 NaN NaN 123119.7 NaN 1978 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3785 28.68 NaN 269500 35 0 39512 0.261 + 4055 ESGGASVISTR 11 38 532.2726723937008 1062.5307918542014 2 532.2725830078125 MULTI HCD FTMS 0 0 0 3783 124827.8984375 0.8647645528372209 3 -0.06710243225097656 2 Unmodified _ESGGASVISTR_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2 20.871137199558856 0.2752315090543355 2 {[ES]|[DT]|[{I|L}C]}NASV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 2 + 47.128 0 0 4.4354 4.4354 85.329 0 0 0 5.669467896306131 5.764837301042718 5.669467896306131 9.164539485499247 0 0.7742275032520141 0 0 0 {[ES]|[DT]|[{I|L}C]}NASV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ES]|[DT]|[{I|L}C]}GGASV{I|L}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.4354;3.5729 -;+ + 130 + NaN NaN 133222.2 NaN 1979 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3786 28.684 NaN 64983 35 0 10906 0.261 + 19567 NSSKDVAVM 9 33 475.7343696319455 949.4541863306911 2 475.7341613769531 MULTI HCD FTMS 0 0 0 3783 38993.14453125 0.41078332012099167 5 -0.10402297973632812 3 Unmodified _NSSKDVAVM_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 12.240655878213236 0.2545997876781172 2 VM 2 7 29.464 0 0 3.1033 0 0 701.3323435657607 0 701.3323435657607 0 29.463950151760656 0 0 0 0.8494850021680094 0 0 0 + VM 3.1033 + + 8 NaN NaN 101344.2 NaN 1980 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3787 28.687 NaN 120980 35 0 67424 0.261 + 22139 QIVQQASGP 9 32 464.2484529403007 926.4823529474014 2 464.2481994628906 MULTI HCD FTMS 0 0 0 3783 34444.953125 0.03616524333745436 22 -0.3153057098388672 4 Unmodified _QIVQQASGP_ REV__ENSG00000168067|ENST00000294066|MAP4K2;REV__nc|ENSG00000168067|Q12851-2|MAP4K2 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 99174.9 NaN 1981 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3788 28.691 NaN 58630 35 0 6811.6 0.261 + 832 AVTSVAKVVR 10 36 515.324490256744 1028.6344275802878 2 515.3240966796875 MULTI HCD FTMS 0 0 0 3783 22465.185546875 0.812926608587094 1 -0.030088424682617188 5 Unmodified _AVTSVAKVVR_ ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-1|IFI27 5.296884461304476 0.4472664531305844 2 {[VA]|[{I|L}G]}{[WT]|[RM]}AK 6 5 6.6555 0 0 0.64702 0 0 0 369.2259920709594 369.2259920709594 5.546218740408905 0 0 0 0 0 0 0 0 {[VA]|[{I|L}G]}{[WT]|[RM]}AK 0.64702 - 6 + NaN NaN 93061.6 NaN 1982 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3789 28.694 NaN 97627 35 0 17744 0.262 + 23055 READQPLRTY 10 42 416.88257750993444 1247.6259031300033 3 416.8824768066406 MULTI HCD FTMS 0 0 0 3783 9589.6298828125 0.4758816631339823 1 -0.030088424682617188 6 Unmodified _READQPLRTY_ ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 6.1918466704503565 0.44252927588099017 2 QD 2 9 11.058 0 0 0.8863 0 0 648.3605355536346 353.1569002740844 1001.517435827719 0 0 0 0 0 1 0 0 0 QD 0.8863 - 7 + NaN NaN 94267.5 NaN 1983 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3790 28.697 NaN 11978 35 0 2678.8 0.261 + -1 NLRPCSRTCN 10 12 639.295546380604 1276.576539828008 2 639.7969360351562 MULTI HCD FTMS 0 0 0 3783 4532.52734375 0.09552379790423869 15 -0.21929550170898438 7 2 Carbamidomethyl (C) _NLRPC(Carbamidomethyl (C))SRTC(Carbamidomethyl (C))N_ REV__CON__Q9R4J5 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 81820.8 NaN 1984 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3791 28.701 NaN 33589 35 0 6506.1 0.264 + 18462 MPVTAPPPGP 10 18 482.2504693982347 NaN 0 482.25152587890625 PEAK HCD FTMS 0 0 0 3783 4191.91796875 0.7383291751485895 1 -0.030088424682617188 8 Unmodified _MPVTAPPPGP_ REV__ENSG00000126562|ENST00000246914|WNK4;REV__ENST00000587705.5_1_17:40937392-40940185:+|nuORF;REV__nc|ENSG00000126562|Q96J92-2|WNK4;REV__nc|ENSG00000126562|Q96J92-3|WNK4 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104465.4 NaN 1985 1804 3783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3793 28.706 NaN 32517 35 0 4501.2 0.327 + 34182 YPDGSKPVKV 10 25 545.3008092179301 1088.5870655026602 2 545.2999877929688 MULTI HCD FTMS 0 0 0 3792 13875.333984375 0.564770789587639 4 -0.07393455505371094 1 Unmodified _YPDGSKPVKV_ ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF 2.498486711656943 0.462078817294651 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98216.5 NaN 1986 1805 3792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3794 28.71 NaN 26618 35 0 4681.1 0.263 -1 PMCCCGSC 8 30 410.1021834633431 NaN 0 410.1021728515625 PEAK HCD FTMS 0 0 0 3792 7624.4482421875 0.6978290565120663 -55 0.9387969970703125 2 Oxidation (M) _PM(Oxidation (M))CCCGSC_ ENST00000579018.5_2_17:71084805-71087985:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99405.7 NaN 1987 1805 3792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3795 28.714 NaN 39323 35 0 9960.3 0.261 -1 SLCCWLLC 8 18 556.2397660538838 NaN 0 556.2400512695312 PEAK HCD FTMS 0 0 0 3792 1640.582763671875 0.2303014215995394 -1 0.030088424682617188 3 3 Carbamidomethyl (C) _SLC(Carbamidomethyl (C))C(Carbamidomethyl (C))WLLC(Carbamidomethyl (C))_ ENST00000378578.8_1_X:37698233-37698311:-|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101762.3 NaN 1988 1805 3792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3797 28.72 NaN 180790 35 0 25373 0.327 -1 MLDILMDYCH 10 46 442.85589689644263 1325.545861289528 3 442.85595703125 MULTI HCD FTMS 0 0 0 3796 66955.6328125 0.6391084048332385 8 -0.11104202270507812 1 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 5.783430956126388 0.4446910851847804 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 -1 35.686 0 0 2.6922 0 0 0 963.374724164781 963.374724164781 35.68636235841012 0 0 0 0 1 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 2.6922 + + 28 NaN NaN 125288.5 NaN 1989 1806 3796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3798 28.724 NaN 42948 35 0 4780.6 0.261 + 14308 LDHFRCCLV 9 25 553.2673400761232 NaN 0 553.2670288085938 PEAK HCD FTMS 0 0 0 3796 20898.34765625 0.6661895815595441 22 -0.2950782775878906 2 Unmodified _LDHFRCCLV_ ENST00000254810.8_2_17:73773409-73773478:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79610.1 NaN 1990 1806 3796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3799 28.728 NaN 69496 35 0 6849 0.261 + 521 APAPAEKTPV 10 30 490.7741493466805 979.533745760161 2 490.77374267578125 MULTI HCD FTMS 0 0 0 3796 22123.208984375 0.6130209191923445 -5 0.10381507873535156 3 Unmodified _APAPAEKTPV_ ENSG00000168298|ENST00000304218|H1-4 10.799506525563784 0.4100970765206026 2 [PA]A 3 7 15.458 0 0 1.5781 0 0 0 737.38309355842 737.38309355842 5.708253071758875 0 0 0 0 0.5 0 0 0 + [PA]A 1.5781 + + 5 + NaN NaN 92369.9 NaN 1991 1806 3796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3800 28.731 NaN 19622 35 0 6067.2 0.261 + -1 VNEGCRSVQR 10 12 602.7942079210899 NaN 0 602.7946166992188 PEAK HCD FTMS 0 0 0 3796 17264.01171875 1 0 0 4 Carbamidomethyl (C) _VNEGC(Carbamidomethyl (C))RSVQR_ REV__INTS10|p.L690V|1|0.13|ENSG00000104613|chr8:19851740-19851740|C/G|missense_variant 1.3295316138638542 0.339046394236575 2 W 1 -1 6.9897 0 0 0.58075 0 0 320.1792228716734 694.2716158502561 1014.4508387219296 0 0 0 0 0 0 0 0 0 W 0.58075 - 1 + NaN NaN 82554.2 NaN 1992 1806 3796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3801 28.734 NaN 15835 35 0 4220.2 0.261 -1 MSKRNRKRS 9 17 589.8303058328029 1177.6460587324057 2 589.830322265625 MULTI HCD FTMS 0 0 0 3796 7881.56298828125 0.5894592117859114 22 -0.2950782775878906 5 Oxidation (M) _M(Oxidation (M))SKRNRKRS_ RBM34|p.K10N|1|0.32|ENSG00000188739|chr1:235161197-235161197|C/G|missense_variant 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86620.7 NaN 1993 1806 3796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3802 28.738 NaN 201350 35 0 21732 0.264 + 32455 WDTGYAKIHI 10 57 401.87790372022243 NaN 0 401.878173828125 PEAK HCD FTMS 0 0 0 3796 4657.77099609375 0.6210289764239045 1 -0.023525238037109375 6 Unmodified _WDTGYAKIHI_ ENSG00000163527|ENST00000295770|STT3B;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000436236.1_1_3:31638325-31661336:+|nuORF 4.3292370932331545 0.3364790620948225 2 K 1 9 5.4846 0 0 0.68408 0 0 129.34684802537885 541.2815035455686 670.6283515709474 0 0 0 0 0 0 0 0 0 + K 0.68408 + + 7 + NaN NaN 109123.8 NaN 1994 1806 3796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3804 28.743 NaN 106440 35 0 34453 0.327 + 4303 EVPNKIINR 9 28 541.8194865488493 1081.6244201644986 2 541.8193969726562 MULTI HCD FTMS 0 0 0 3803 42968.109375 0.5544347629730848 1 -0.020145416259765625 1 Unmodified _EVPNKIINR_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 25.399314129420986 0.14091189997036632 2 EVPNK{I|L} 6 3 63.633 0 0 5.8831 0 0 0 398.21442590885005 398.21442590885005 53.17532531436136 0 0 0 0 0 1.5228787452803376 0 0.4247425010840047 + EVPNK{I|L} 5.8831 + + 25 + NaN NaN 100202.5 NaN 1995 1807 3803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3805 28.748 NaN 106020 35 0 10608 0.262 -1 0 40 441.2075503092889 1320.6008215280667 3 441.20745849609375 MULTI HCD FTMS 0 0 0 3803 54427.81640625 0.5778043591848921 9 -0.10547447204589844 2 NaN NaN 2 PGY{M(Oxidation (M))|F} 4 -1 33.404 0 0 2.5295 0 0 838.3700608852918 0 838.3700608852918 0 27.919562702124452 0 0 0 0.9247425010840047 0 0 0 PGY{M(Oxidation (M))|F} 2.5295 - 16 + NaN NaN 102731.7 NaN 1996 1807 3803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3806 28.751 NaN 122180 35 0 26956 0.261 -1 MPSASMTRL 9 41 513.2414717806668 1024.4683906281334 2 513.2415161132812 MULTI HCD FTMS 0 0 0 3803 30948.873046875 0.7253115313279859 -27 0.458953857421875 3 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 9.38312468134398 0.279288223203164 2 AS[EP] 4 -1 23.94 0 0 2.3368 0 0 622.3110142107886 0 622.3110142107886 0 3.750612633917001 0 0 0 0.5 0 0.4247425010840047 0 AS[EP] 2.3368 - 28 NaN NaN 98010.4 NaN 1997 1807 3803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3807 28.754 NaN 57701 35 0 14320 0.261 + 19478 NPWFQRAK 8 19 523.7792426982467 1045.5439324632932 2 523.7791137695312 MULTI HCD FTMS 0 0 0 3803 11945.73046875 0.695339512422165 2 -0.03692054748535156 4 Unmodified _NPWFQRAK_ ENSG00000185436|ENST00000327535|IFNLR1;nc|ENSG00000185436|Q8IU57-2|IFNLR1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96132.5 NaN 1998 1807 3803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3808 28.758 NaN 26052 35 0 3379.9 0.261 + 2975 EAAEVLQNNR 10 25 572.2914389213571 1142.568324909514 2 572.2916259765625 MULTI HCD FTMS 0 0 0 3803 6992.81689453125 0.5063385261359594 -3 0.06710243225097656 5 Unmodified _EAAEVLQNNR_ ENSG00000130725|ENST00000253023|UBE2M 3.2813086475875832 0.45793521633868084 2 {I|L}Q 2 8 4.9485 0 0 0.4331 0 0 499.2303865323641 399.17344080142817 898.4038273337923 0 0 0 0 0 0 0 0 0 + {I|L}Q 0.4331 + + 4 + NaN NaN 94468.5 NaN 1999 1807 3803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3810 28.763 NaN 534110 35 0 43937 0.327 + 9242 HPLSDHEATL 10 72 560.275140829622 1118.535728726044 2 560.2750244140625 MULTI HCD FTMS 0 0 0 3809 219444.765625 0.035168444862992844 28 -0.36309051513671875 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 123.45060196383646 3.270871365774944E-05 2 EAT{I|L} 4 6 47.665 0 0 4.2614 0 0 686.3095570294937 0 686.3095570294937 0 0.44424732769174113 0 0 0 0.75 0 1.4247425010840047 0 + EAT{I|L} 4.2614 + + 1137 NaN NaN 166079.7 NaN 2000 1808 3809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3811 28.768 NaN 175710 35 0 44032 0.261 -1 SAAAVDAGMAM 11 39 513.7151290416595 1025.4157051501188 2 513.7152099609375 MULTI HCD FTMS 0 0 0 3809 57489.6796875 0.48656360686643335 -19 0.36406898498535156 2 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 32.78568957990786 0.18341249061758555 2 VW 2 -1 22.959 0 0 2.239 0 0 300.1436863892695 437.11579309635005 737.2594794856195 0 0 0 0 0 1.3494850021680094 0 0 0 VW 2.239 - 39 + NaN NaN 133883.5 NaN 2001 1808 3809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3812 28.771 NaN 31531 35 0 4889.3 0.261 + 9644 HVAGYEHEL 9 16 527.7512791903864 1053.4880054475727 2 527.751220703125 MULTI HCD FTMS 0 0 0 3809 11264.7373046875 0.4292555260770582 -6 0.13072776794433594 3 Unmodified _HVAGYEHEL_ CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;ENSG00000110274|ENST00000278935|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164 11.640296217721598 0.25978676193971967 2 HV 2 7 39.949 0 0 3.792 0 0 0 814.3388021229115 814.3388021229115 39.94850021680094 0 0 0 0 0.5 1.6989700043360187 0 0 + HV 3.792 + + 2 + NaN NaN 93690.7 NaN 2002 1808 3809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3813 28.775 NaN 38477 35 0 11531 0.261 + 23817 RRRQGPPP 8 27 482.28464738535433 NaN 0 482.2843017578125 PEAK HCD FTMS 0 0 0 3809 4813.1767578125 0.6060373515145207 1 -0.016775131225585938 4 Unmodified _RRRQGPPP_ REV__ENST00000215832.10_1_22:22221790-22221904:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103696.5 NaN 2003 1808 3809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3815 28.78 NaN 44134 35 0 11314 0.327 -1 YRCLYCGI 8 23 524.2406417300234 1046.4667305268467 2 524.240234375 MULTI HCD FTMS 0 0 0 3814 16163.08203125 0.80568245034228 -3 0.06044578552246094 1 Carbamidomethyl (C) _YRCLYC(Carbamidomethyl (C))GI_ ENST00000607286.5_1_5:476455-476563:+|nuORF 2.302733041254933 0.5385759549224092 2 G 1 -1 1.9897 0 0 0.19014 0 0 540.7551959582905 445.6567782037719 986.4119741620625 0 0 0 0 0 0 0 0 0 G 0.19014 + + 2 + NaN NaN 104342.6 NaN 2004 1809 3814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3817 28.787 NaN 32163 35 0 3925.4 0.411 + 19156 NGTSSVIVSR 10 33 510.27682140242234 1018.5390898716447 2 510.2775573730469 MULTI HCD FTMS 0 0 0 3816 6485.0048828125 0.20961334198220039 -11 0.2053852081298828 1 Unmodified _NGTSSVIVSR_ ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11 6.1918466704503565 0.44252927588099017 2 SW{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 6 5 20.635 0 0 2.0259 0 0 272.11335080614646 0 272.11335080614646 0 20.63486257521106 0 0 0 0 0 0 0 SW{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 2.0259 - 21 + NaN NaN 102140.9 NaN 2005 1810 3816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3819 28.795 NaN 74533 35 0 9754.8 0.327 + -1 MVLEVMAM 8 31 478.2188183615638 954.4230837899277 2 478.218505859375 MULTI HCD FTMS 0 0 0 3818 39553.84375 0.1940492194133694 7 -0.07635879516601562 1 2 Oxidation (M) _M(Oxidation (M))VLEVM(Oxidation (M))AM_ REV__ENST00000490442.5_1_10:70098974-70099271:+|nuORF 20.871210003555333 0.44023077629866025 2 VAM 3 -1 36.198 0 0 3.7926 0 0 635.2643566440382 0 635.2643566440382 0 29.20818753952375 0 0 0 1 0 0 0 VAM 3.7926 - 17 NaN NaN 98595.8 NaN 2006 1811 3818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3820 28.8 NaN 75512 35 0 16993 0.261 + 2603 DTVKIQRR 8 36 508.30435288682025 1014.5941528404405 2 508.30389404296875 MULTI HCD FTMS 0 0 0 3818 32339.533203125 0.7328742446006992 1 -0.01322174072265625 2 Unmodified _DTVKIQRR_ REV__ENST00000559779.1_1_15:52472529-52473384:+|nuORF;REV__ENST00000560518.1_1_15:52473228-52473384:+|nuORF 7.910154910731844 0.5302565402355366 2 R 1 -1 20.485 0 0 2.019 0 0 840.4829142923921 0 840.4829142923921 0 13.037275116073344 0 0 0 0.5 0 0 0 R 2.019 + + 3 + NaN NaN 97310.8 NaN 2007 1811 3818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3821 28.803 NaN 80275 35 0 11124 0.261 + 6379 FPGEERTR 8 36 496.2514851225683 990.4884173119366 2 496.7432861328125 MULTI HCD FTMS 0 0 0 3818 4141.33984375 0.07314046761668012 9 -0.11311912536621094 3 Unmodified _FPGEERTR_ REV__nc|ENSG00000155229|Q96T76-9|MMS19 2.577480529830294 0.5381683276125971 2 N 1 -1 2.4743 0 0 0.2498 0 0 468.2796293254116 405.14264856510005 873.4222778905116 0 0 0 0 0 0 0 0 0 N 0.2498 - 1 + NaN NaN 95675.2 NaN 2008 1811 3818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3823 28.809 NaN 53643 35 0 4782.7 0.327 -1 0 32 524.2406417300234 1046.4667305268467 2 524.7529296875 MULTI HCD FTMS 0 0 0 3822 7172.705078125 0.7784409115776929 -1 0.01322174072265625 1 NaN NaN 2 V 1 -1 5.4846 0 0 0.5241 0 0 299.21405826297797 645.1579073541624 944.3719656171404 0 0 0 0 0 0 0 0 0 V 0.5241 - 2 + NaN NaN 93360.5 NaN 2009 1812 3822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3824 28.813 NaN 28417 35 0 5727.2 0.261 + 5013 FCPWPGLLR 9 21 544.7883302467894 1087.5621075603788 2 544.8021240234375 MULTI HCD FTMS 0 0 0 3822 3526.434326171875 0.38468564292306945 -3 0.028865814208984375 2 Unmodified _FCPWPGLLR_ ENST00000417626.6_1_3:50327152-50327360:-|nuORF;ENST00000483071.1_1_3:50327152-50327194:-|nuORF 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90161 NaN 2010 1812 3822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3825 28.817 NaN 12066 35 0 4216.3 0.261 + -1 HPRKCVCCYL 10 10 639.7966918945312 NaN 0 639.7966918945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _HPRKC(Carbamidomethyl (C))VCCYL_ REV__ENST00000392784.6_1_12:109523736-109523829:+|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98286.1 NaN 2011 1812 3822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3827 28.822 NaN 53046 35 0 5944 0.411 -1 SPDRQAEML 9 37 531.7478962408395 1061.481239548479 2 531.7478637695312 MULTI HCD FTMS 0 0 0 3826 14321.0537109375 0.6063747678454086 6 -0.07295989990234375 1 Oxidation (M) _SPDRQAEM(Oxidation (M))L_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 13.042465956692817 0.2476723265019929 2 E{M(Oxidation (M))|F}{I|L} 3 -1 35.445 0 0 3.3392 0 0 654.3073597638687 0 654.3073597638687 0 22.25772496747986 0 0 0 0.5 0 0.4247425010840047 0 E{M(Oxidation (M))|F}{I|L} 3.3392 + + 14 NaN NaN 95439.1 NaN 2012 1813 3826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3829 28.83 NaN 30530 35 0 5325.6 0.327 -1 MLFYTNMY 8 20 549.7347945545997 1097.4550361759993 2 549.7344360351562 MULTI HCD FTMS 0 0 0 3828 8966.078125 0.5841485686131194 -2 0.021730422973632812 1 Oxidation (M) _M(Oxidation (M))LFYTNMY_ ENSG00000139679|ENST00000620633|LPAR6;LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant 0.7936320650641473 0.540814922690045 2 {I|L}[{M(Oxidation (M))|F}E] 3 -1 8.9524 0 0 0.81574 0 0 690.2723407187713 0 690.2723407187713 0 8.952424927286843 0 0 0 0 0 0 0 {I|L}[{M(Oxidation (M))|F}E] 0.81574 - 3 + NaN NaN 84529.7 NaN 2013 1814 3828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3830 28.835 NaN 14407 35 0 4050.7 0.261 + 21902 QDLEPFLFY 9 14 586.2873396143207 NaN 0 586.2879028320312 PEAK HCD FTMS 0 0 0 3828 4415.9921875 0.5214883878842451 -5 0.05059623718261719 2 Unmodified _QDLEPFLFY_ ENST00000369014.9_1_1:150595095-150595323:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88283.7 NaN 2014 1814 3828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3832 28.84 NaN 21154 35 0 4719.1 0.411 -1 RTCRDLRL 8 28 545.3008092179301 1088.5870655026602 2 545.300537109375 MULTI HCD FTMS 0 0 0 3831 1797.0606689453125 0.07314615807302682 13 -0.17413330078125 1 Carbamidomethyl (C) _RTC(Carbamidomethyl (C))RDLRL_ ENSG00000164692|ENST00000297268|COL1A2;ENST00000481570.5_1_7:94056869-94058766:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101152.5 NaN 2015 1815 3831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3834 28.848 NaN 64621 35 0 11874 0.327 + 522 APAPAEKTPV 10 28 490.7741493466805 979.533745760161 2 490.774169921875 MULTI HCD FTMS 0 0 0 3833 22714.521484375 0.6294058357085668 5 -0.07369232177734375 1 Unmodified _APAPAEKTPV_ ENSG00000168298|ENST00000304218|H1-4 17.11289562659939 0.35104376501799556 2 [PA]A 3 7 18.952 0 0 1.9348 0 0 0 737.3833059236772 737.3833059236772 18.952424927286845 0 0 0 0 0.8494850021680094 0 0 0 + [PA]A 1.9348 + + 7 + NaN NaN 96124.5 NaN 2016 1816 3833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3835 28.853 NaN 66179 35 0 19138 0.261 + 23230 RGALAWSSGS 10 27 496.2514851225683 990.4884173119366 2 496.2510681152344 MULTI HCD FTMS 0 0 0 3833 10165.58984375 0.08148113707031968 15 -0.20595359802246094 2 Unmodified _RGALAWSSGS_ ENST00000555117.1_1_14:31343755-31344058:+|nuORF 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89201.7 NaN 2017 1816 3833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3836 28.856 NaN 24752 35 0 10585 0.261 + 29698 VDARALTQTGG 11 14 544.7883302467894 1087.5621075603788 2 544.7877197265625 MULTI HCD FTMS 0 0 0 3833 9167.0546875 1 0 0 3 Unmodified _VDARALTQTGG_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87123.8 NaN 2018 1816 3833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3838 28.862 NaN 265640 35 0 30934 0.327 -1 CLSMTEHALG 10 48 559.7524879346511 1117.490422936102 2 559.751953125 MULTI HCD FTMS 0 0 0 3837 55206.6328125 0.8243090871677718 9 -0.12944984436035156 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSMTEHALG_ ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENST00000556069.5_1_14:55251199-55255659:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A 9.38312468134398 0.42334543440173333 2 P{I|L}{M(Oxidation (M))|F}V 4 -1 20.037 0 0 1.793 0 0 136.0121647347333 522.2316363975889 658.2438011323222 0 0 0 0 0 0.5 0 0 0 P{I|L}{M(Oxidation (M))|F}V 1.793 - 136 + NaN NaN 134007.7 NaN 2019 1817 3837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3839 28.866 NaN 88718 35 0 11428 0.261 + 2453 DQDGRYRSL 9 29 555.2702825551205 1108.526012177041 2 555.2703857421875 MULTI HCD FTMS 0 0 0 3837 17318.376953125 0.10279248658285245 -10 0.11875343322753906 2 Unmodified _DQDGRYRSL_ REV__ENST00000599899.5_1_19:6677895-6682275:-|nuORF 2.9952420565917617 0.3283108881486655 2 S{I|L} 2 -1 17.959 0 0 1.6201 0 0 890.3980983142006 0 890.3980983142006 0 17.95880017344075 0 0 0 0 0 0 0 S{I|L} 1.6201 + + 2 NaN NaN 93745.1 NaN 2020 1817 3837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3841 28.872 NaN 79014 35 0 8974.5 0.327 -1 0 39 441.2075503092889 1320.6008215280667 3 441.20751953125 MULTI HCD FTMS 0 0 0 3840 44715.09765625 0.4746943760211656 20 -0.2843189239501953 1 NaN NaN 2 Y{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9665 0 0 992.4568331948365 0 992.4568331948365 0 13.99670274726791 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 1.9665 - 7 NaN NaN 108938.4 NaN 2021 1818 3840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3842 28.876 NaN 101620 35 0 27977 0.261 + 11988 KFYEERSISS 10 38 415.8754366951123 1244.6044806855368 3 415.8751220703125 MULTI HCD FTMS 0 0 0 3840 12944.11328125 0.5266713251357945 -9 0.09200286865234375 2 Unmodified _KFYEERSISS_ REV__ENSG00000175874|ENST00000324768|CREG2 0.6268255596534771 0.47198581731947004 2 A 1 -1 1.9897 0 0 0.15987 0 0 829.5930193591681 340.9458101861938 1170.538829545362 0 0 0 0 0 0 0 0 0 A 0.15987 - 2 + NaN NaN 96842.4 NaN 2022 1818 3840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3843 28.88 NaN 35976 35 0 8238.9 0.261 + 28125 TIMLFVVIF 9 21 541.8194865488493 1081.6244201644986 2 541.8193969726562 MULTI HCD FTMS 0 0 0 3840 10457.65625 0.13493933637201716 12 -0.16579055786132812 3 Unmodified _TIMLFVVIF_ REV__ENST00000482587.5_3_1:179833497-179833611:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99944.7 NaN 2023 1818 3840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3844 28.883 NaN 11335 35 0 3292.2 0.261 + 21407 PVNRWHTRL 9 8 589.8303058328029 1177.6460587324057 2 589.8300170898438 MULTI HCD FTMS 0 0 0 3840 9830.5849609375 0.735225851913457 34 -0.5098819732666016 4 Unmodified _PVNRWHTRL_ REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF;REV__ENST00000480568.1_1:147594391-147596156:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84748.6 NaN 2024 1818 3840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3845 28.886 NaN 21079 35 0 4403.7 0.261 + 23094 REQWWRWN 8 17 630.8059499955311 NaN 0 630.8063354492188 PEAK HCD FTMS 0 0 0 3840 1794.833740234375 0.45665377595808515 1 -0.0232696533203125 5 Unmodified _REQWWRWN_ ENST00000510393.5_1_1:16083148-16084686:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87639.4 NaN 2025 1818 3840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3846 28.89 NaN 121890 35 0 19170 0.264 + 14424 LEMERLHYI 9 55 401.87790372022243 NaN 0 401.8778381347656 PEAK HCD FTMS 0 0 0 3840 7153.25732421875 0.9537566526739893 13 -0.18250465393066406 6 Unmodified _LEMERLHYI_ ENSG00000110446|ENST00000227880|SLC15A3 2.302733041254933 0.2840881193086663 2 {M(Oxidation (M))|F} 1 8 2.4743 0 0 0.30861 0 0 275.48150216525113 376.18125330142817 651.6627554666793 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.30861 + + 2 + NaN NaN 102269 NaN 2026 1818 3840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3848 28.895 NaN 390100 35 0 27288 0.327 + 9243 HPLSDHEATL 10 68 560.275140829622 1118.535728726044 2 560.2750244140625 MULTI HCD FTMS 0 0 0 3847 163332.609375 0.02617585272892487 39 -0.6066570281982422 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 92.4914307365334 0.0008111888129278865 2 EAT{I|L} 4 6 46.657 0 0 4.1712 0 0 686.3134632794937 0 686.3134632794937 0 12.104093769761874 0 0 0 0.75 0 1.3494850021680094 0 + EAT{I|L} 4.1712 + + 225 NaN NaN 140608.1 NaN 2027 1819 3847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3849 28.9 NaN 36642 35 0 8702.5 0.262 -1 CYRACFRQCV 10 23 454.8670621712361 NaN 0 454.86700439453125 PEAK HCD FTMS 0 0 0 3847 11966.13671875 0.7095806548863062 -8 0.09962844848632812 2 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86964.5 NaN 2028 1819 3847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3850 28.903 NaN 13946 35 0 4455 0.261 + 35987 YYYIFYVL 8 11 572.2914389213571 1142.568324909514 2 572.291748046875 MULTI HCD FTMS 0 0 0 3847 4602.6015625 0.33326691184633583 9 -0.11935997009277344 3 Unmodified _YYYIFYVL_ REV__chr15:76775117-76779755|273|11.21|0.02|9.44|-|1|TE_info:L1MDa,L1MDa_dup5830,L1,LINE,donor,+,76779755,76779902|SCAPER,None|3 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93338 NaN 2029 1819 3847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3852 28.909 NaN 248120 35 0 68023 0.327 + 25040 SAAAVDAGMAM 11 42 513.7151290416595 1025.4157051501188 2 513.7152099609375 MULTI HCD FTMS 0 0 0 3851 101965.015625 0.8629803826769188 -7 0.08645057678222656 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 51.629811660486645 0.07472562200723704 2 WVAPN 5 9 36.146 0 0 3.525 0 0 440.13911635566564 0 440.13911635566564 0 13.526909627198407 0 0 0 1.3494850021680094 0 0 0 WVAPN 3.525 - 32 NaN NaN 116672.7 NaN 2030 1820 3851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3853 28.913 NaN 38908 35 0 7420.4 0.261 + 9645 HVAGYEHEL 9 23 527.7512791903864 1053.4880054475727 2 527.7510986328125 MULTI HCD FTMS 0 0 0 3851 11482.0029296875 0.43753467787929573 6 -0.08251953125 2 Unmodified _HVAGYEHEL_ CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;ENSG00000110274|ENST00000278935|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164 11.640296217721598 0.25978676193971967 2 [HV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WH]E 7 3 22.235 0 0 2.1106 0 0 0 128.07487083350966 128.07487083350966 8.511744483784085 0 0 0 0 0.5 1.6989700043360187 0 0 [HV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WH]E 2.1106 - 5 NaN NaN 98685.3 NaN 2031 1820 3851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3854 28.917 NaN 61820 35 0 13693 0.261 + -1 QPPCRCNY 8 23 547.7284155971474 1093.4422782610948 2 547.7278442382812 MULTI HCD FTMS 0 0 0 3851 9722.9208984375 0.2926674684917771 -5 0.06826400756835938 3 2 Carbamidomethyl (C) _QPPC(Carbamidomethyl (C))RC(Carbamidomethyl (C))NY_ REV__ENSG00000134250|ENST00000256646|NOTCH2;REV__NOTCH2|p.H656Lfs*46|1|0.18|ENSG00000134250|chr1:119959451-119959451|T/-|frameshift_variant;REV__NOTCH2|p.Q1584Rfs*17|1|0.32|ENSG00000134250|chr1:119923745-119923745|T/-|frameshift_variant;REV__NOTCH2|p.R1111Gfs*96|1|0.26|ENSG00000134250|chr1:119937864-119937864|G/-|frameshift_variant;REV__NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant 0.6903765706972694 0.5409681170271811 2 T 1 -1 3.9794 0 0 0.36393 0 0 455.148590372226 534.2390230768186 989.3876134490447 0 0 0 0 0 0 0 0 0 T 0.36393 - 2 + NaN NaN 91199.8 NaN 2032 1820 3851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3856 28.922 NaN 95576 35 0 9008.4 0.327 + 8840 HLGGKEYTL 9 41 509.2715212475625 1016.528489561925 2 509.27191162109375 MULTI HCD FTMS 0 0 0 3855 37928.515625 0.3471932686906955 -9 0.11338043212890625 1 Unmodified _HLGGKEYTL_ ENSG00000143839|ENST00000272190|REN;nc|ENSG00000143839|P00797-2|REN 21.536976647645854 0.1742816388551942 2 HAV 3 8 30.674 0 0 3.0175 0 0 0 706.3422335260374 706.3422335260374 15.216525140920607 0 0 0 0 0.9247425010840047 0 0 0 HAV 3.0175 - 47 + NaN NaN 97350.1 NaN 2033 1821 3855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3857 28.927 NaN 89081 35 0 8410 0.261 -1 0 30 490.74356744680523 979.4725819604105 2 490.7433776855469 MULTI HCD FTMS 0 0 0 3855 28225.64453125 0.11117877210946256 -10 0.1266021728515625 2 NaN NaN 2 T{I|L} 2 -1 30.217 0 0 3.085 0 0 747.3312182040104 0 747.3312182040104 0 24.731975075880328 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 3.085 - 6 NaN NaN 104365.2 NaN 2034 1821 3855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3858 28.93 NaN 45538 35 0 5155.3 0.261 -1 MTTKNYCD 8 24 524.7065633677918 NaN 0 524.7067260742188 PEAK HCD FTMS 0 0 0 3855 4870.8291015625 0.41489378250216 6 -0.08228111267089844 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))TTKNYC(Carbamidomethyl (C))D_ ENSG00000104320|ENST00000265433|NBN;NBN|p.Q326E|1|0.12|ENSG00000104320|chr8:89964428-89964428|G/C|missense_variant 0.6903765706972694 0.38822285293237185 2 V 1 -1 5.4846 0 0 0.52364 0 0 300.1472443119522 645.1630953424436 945.3103396543959 0 0 0 0 0 0 0 0 0 V 0.52364 - 2 + NaN NaN 90943.3 NaN 2035 1821 3855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3859 28.934 NaN 39949 35 0 3602.6 0.261 -1 0 29 494.2588527416918 986.5031525501836 2 494.25726318359375 MULTI HCD FTMS 0 0 0 3855 13489.0244140625 0.02311068882682713 -12 0.14224624633789062 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90837 NaN 2036 1821 3855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3860 28.937 NaN 31133 35 0 7937.8 0.261 + 14414 LELEDLLIQ 9 18 543.3066966953625 1084.5988404575248 2 543.3058471679688 MULTI HCD FTMS 0 0 0 3855 11232.2607421875 0.9554380840325748 -1 0.013483047485351562 5 Unmodified _LELEDLLIQ_ REV__ENSG00000176406|ENST00000696799|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-1|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-7|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2;REV__nc|ENSG00000176406|Q9UQ26|RIMS2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93318.5 NaN 2037 1821 3855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3862 28.942 NaN 114630 35 0 20672 0.327 + 18947 NAGNIVVSR 9 50 465.2616398246067 928.5087267160134 2 465.26141357421875 MULTI HCD FTMS 0 0 0 3861 60099.5625 0.9590202483674577 -2 0.03360748291015625 1 Unmodified _NAGNIVVSR_ ENSG00000105088|ENST00000264833|OLFM2;ENSG00000130558|ENST00000371793|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1 51.487983226225225 0.029489205318603332 2 {[QG]|[NA]}GN{I|L}VVSR 9 0 + 80.582 0 0 8.6787 8.6787 92.994 0 0 0 3.599074855912221 3.599074855912221 3.599074855912221 9.208187539523749 0 2.471848749616356 1.6989700043360187 0 0 + + {[QG]|[NA]}GN{I|L}VVSR;{[QG]|[NA]}GGG{I|L}VVSR;{[QN]|[E{I|L}]|[KN]}N{I|L}VVSR;{[QN]|[E{I|L}]|[KN]}GG{I|L}VVSR 8.6787;7.6869;5.7389;4.7414 +;-;-;- + 139 + NaN NaN 110820.6 NaN 2038 1822 3861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3863 28.947 NaN 125070 35 0 14876 0.261 + 26486 SVASTPISQR 10 35 523.2852721993746 1044.5559914655491 2 523.284912109375 MULTI HCD FTMS 0 0 0 3861 40577.8125 0.556373053897796 -5 0.08053779602050781 2 Unmodified _SVASTPISQR_ chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1 26.020703789607367 0.2677231329712098 2 [VS]AST 5 5 50.317 0 0 4.8171 0 0 0 596.315474368893 596.315474368893 50.31743128760553 0 0 0 0 1.110924374808178 1.6989700043360187 0 0 + [VS]AST 4.8171 + + 62 + NaN NaN 106377.5 NaN 2039 1822 3861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3864 28.95 NaN 43053 35 0 6949 0.261 -1 TEMDSHEEKVF 11 25 456.53058308080756 1366.5699198426228 3 456.86468505859375 MULTI HCD FTMS 0 0 0 3861 17665.484375 0.7757855010807287 -2 0.03360748291015625 3 Oxidation (M) _TEM(Oxidation (M))DSHEEKVF_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 2.4347853303010236 0.4082425251555256 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 90428.2 NaN 2040 1822 3861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3865 28.954 NaN 69527 35 0 7157.4 0.261 + 3478 EGLEAAERI 9 31 494.2588527416918 986.5031525501836 2 494.2587585449219 MULTI HCD FTMS 0 0 0 3861 31297.990234375 0.05362271510589346 -11 0.1467266082763672 4 Unmodified _EGLEAAERI_ ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;ENSG00000076555|ENST00000338432|ACACB;ENST00000543080.1_1_12:109613818-109617755:+|nuORF;nc|ENSG00000076555|O00763-2|ACACB;nc|ENSG00000076555|O00763-3|ACACB 12.240655878213236 0.2545997876781172 2 W{I|L}Q 3 8 35.445 0 0 3.593 0 0 0 556.2748507135374 556.2748507135374 14.47621246364342 0 0 0 0 0.9247425010840047 0 0 0 W{I|L}Q 3.593 - 11 + NaN NaN 96473.1 NaN 2041 1822 3861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3866 28.957 NaN 35914 35 0 5981.3 0.261 + 26298 SRQAFESM 8 25 478.2188183615638 954.4230837899277 2 478.2182922363281 MULTI HCD FTMS 0 0 0 3861 9146.794921875 0.04487372772017927 18 -0.24205970764160156 5 Unmodified _SRQAFESM_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97687.2 NaN 2042 1822 3861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3867 28.96 NaN 37535 35 0 9837.3 0.261 + 1661 CCVHVTHY 8 29 481.2040694543319 NaN 0 480.7503967285156 PEAK HCD FTMS 0 0 0 3861 1654.7796630859375 0.36551009319190164 -3 0.04709815979003906 6 Unmodified _CCVHVTHY_ REV__ENST00000468127.1_1_7:137684448-137686451:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96690.4 NaN 2043 1822 3861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3869 28.966 NaN 1562800 35 0 190080 0.327 + 9376 HPTDERVAL 9 80 519.2722573222529 1036.5299617113058 2 519.2723388671875 MULTI HCD FTMS 0 0 0 3868 729735.4375 0.5881795811167011 -8 0.12529754638671875 1 Unmodified _HPTDERVAL_ ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU 79.59630418116434 0.005983006570063981 2 HPTDE 5 4 69.156 0 0 6.6719 0 0 0 454.2789270192905 454.2789270192905 47.78228547580689 0 0 0 0 1.3494850021680094 1.154901959985743 1.305462187404089 0 + HPTDE 6.6719 + + 181 + NaN NaN 327411.7 NaN 2044 1823 3868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3871 28.973 NaN 21556 35 0 3311.4 0.327 + 12348 KNELDQGPR 9 16 528.7753479046191 1055.5361428760382 2 528.7755737304688 MULTI HCD FTMS 0 0 0 3870 3805.6630859375 0.4343987009725428 3 -0.031131744384765625 1 Unmodified _KNELDQGPR_ REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF 1.844237919475145 0.33703635659052655 2 Q 1 -1 6.9897 0 0 0.66219 0 0 599.2921986395132 325.16230188541255 924.4545005249258 0 0 0 0 0 0 0 0 0 Q 0.66219 + + 1 + NaN NaN 89311.3 NaN 2045 1824 3870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3872 28.978 NaN 18838 35 0 4409.4 0.261 -1 YHRHCFRCRRC 11 14 569.9280279172252 1706.7622543518755 3 570.2612915039062 MULTI HCD FTMS 0 0 0 3870 1779.8116455078125 0.31772280688450183 7 -0.08111190795898438 2 3 Carbamidomethyl (C) _YHRHC(Carbamidomethyl (C))FRC(Carbamidomethyl (C))RRC(Carbamidomethyl (C))_ ENSG00000100139|ENST00000215957|MICALL1 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81378.7 NaN 2046 1824 3870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3874 28.983 NaN 12040 35 0 2359.3 0.411 + 35689 YYKYSTAIY 9 20 586.2872314453125 NaN 0 586.2872314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YYKYSTAIY_ tr|U7STI0|U7STI0_FUSNUPeptidoglycanglycosyltransferaseRodAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rodAPE=3SV=1 1.6526216038709556 0.28723846860855273 2 G 1 9 1.5938 0 0 0.13616 0 0 584.7929536115249 525.7217501275999 1110.5147037391248 0 0 0 0 0 0 0 0 0 G 0.13616 - 1 + NaN NaN 89725.6 NaN 2047 1825 3873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3876 28.991 NaN 398880 35 0 93941 0.327 + 2415 DPNRDGHVSL 10 47 555.2702825551205 1108.526012177041 2 555.2703857421875 MULTI HCD FTMS 0 0 0 3875 163889.875 0.97276135186346 -1 0.008028030395507812 1 Unmodified _DPNRDGHVSL_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 37.771325159832564 0.16474695691370878 2 D{[HG]|PP}VS{I|L} 6 4 43.505 0 0 3.9246 0 0 482.2240162580094 0 482.2240162580094 0 10.329693599488294 0 0 0 1.6989700043360187 0 0.3494850021680094 0 + D{[HG]|PP}VS{I|L} 3.9246 + + 136 NaN NaN 139410.2 NaN 2048 1826 3875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3877 28.996 NaN 38184 35 0 6412.7 0.261 -1 0 25 485.25105480795173 484.24377834135174 1 485.2503967285156 MULTI HCD FTMS 0 0 0 3875 19896.552734375 0.023538230317125396 92 -1.4935550689697266 2 NaN NaN 2 [YR]{M(Oxidation (M))|F} 3 -1 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0 1 0 0.3807196863200844 [YR]{M(Oxidation (M))|F} 0 - 3 NaN NaN 87174.8 NaN 2049 1826 3875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3878 28.999 NaN 19199 35 0 3833.8 0.261 -1 0 18 606.1740723882672 605.1667959216671 1 606.173828125 MULTI HCD FTMS 0 0 0 3875 10179.478515625 0.25938813204261696 -10 0.1427288055419922 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87576.7 NaN 2050 1826 3875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3880 29.005 NaN 49543 35 0 6491.1 0.327 + 35796 YYNVWLRAQ 9 28 404.8768710698894 1211.608783809868 3 404.8768005371094 MULTI HCD FTMS 0 0 0 3879 20094.5546875 0.8896153328677913 -7 0.09576416015625 1 Unmodified _YYNVWLRAQ_ ENSG00000145860|ENST00000424310|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 4.897010918128616 0.31389406404703984 2 YY 2 7 40.969 0 0 3.3814 0 0 0 882.4579492523918 882.4579492523918 35.48455006504028 0 0 0 0 0 2 0 0 + YY 3.3814 + + 2 + NaN NaN 93874.5 NaN 2051 1827 3879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3881 29.009 NaN 36423 35 0 8542.4 0.261 -1 QQLCGHAM 8 12 480.70259779432206 NaN 0 480.7024230957031 PEAK HCD FTMS 0 0 0 3879 4908.71240234375 0.6174008524062685 1 -0.010105133056640625 2 Carbamidomethyl (C),Oxidation (M) _QQLC(Carbamidomethyl (C))GHAM(Oxidation (M))_ ENSG00000148225|ENST00000374193|WDR31;ENST00000461942.5_1_9:116083780-116093329:-|nuORF;nc|ENSG00000148225|Q8NA23-2|WDR31 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99975.7 NaN 2052 1827 3879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3883 29.014 NaN 299730 35 0 28769 0.327 + 9244 HPLSDHEATL 10 49 560.275140829622 1118.535728726044 2 560.2750854492188 MULTI HCD FTMS 0 0 0 3882 126290.546875 0.020239453521896465 48 -0.7806205749511719 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 74.92900055777586 0.011744908545316337 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D[HS]EAT{I|L} 10 2 + 42.089 0 0 3.7628 3.7628 89.643 0 0 0 2.9440873258899813 7.535918783769091 2.9440873258899813 42.0885127703319 0 1.1237125054200234 0 1.9247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D[HS]EAT{I|L} 3.7628 - 91 NaN NaN 129238.8 NaN 2053 1828 3882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3884 29.019 NaN 15425 35 0 3463.6 0.261 + 10287 IKRKMMQPF 9 14 589.8303058328029 1177.6460587324057 2 589.8299560546875 MULTI HCD FTMS 0 0 0 3882 5959.90478515625 0.4457390979683586 44 -0.72021484375 2 Unmodified _IKRKMMQPF_ ENSG00000162664|ENST00000340281|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;nc|ENSG00000162664|Q5BKZ1-3|ZNF326 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 86583.9 NaN 2054 1828 3882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3886 29.024 NaN 25310 35 0 4955.4 0.327 -1 AEIEGRDCI 9 22 531.7478962408395 1061.481239548479 2 531.7476196289062 MULTI HCD FTMS 0 0 0 3885 10766.564453125 0.45587239266969554 22 -0.34411048889160156 1 Carbamidomethyl (C) _AEIEGRDC(Carbamidomethyl (C))I_ tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77067.3 NaN 2055 1829 3885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3887 29.029 NaN 27242 35 0 4342.8 0.261 + 12149 KKKKKKKKKSF 11 21 469.3284273439453 NaN 0 469.3282775878906 PEAK HCD FTMS 0 0 0 3885 8570.158203125 0.46911915199520354 36 -0.5973548889160156 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100927.6 NaN 2056 1829 3885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3888 29.032 NaN 93953 35 0 17094 0.261 + -1 LCAWISLPFP 10 47 401.87790372022243 NaN 0 401.87811279296875 PEAK HCD FTMS 0 0 0 3885 1715.482666015625 0.22872838639815155 24 -0.37744140625 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))AWISLPFP_ REV__ENSG00000065060|ENST00000192788|BLTP3A 0.6976657623105312 0.3395871838311286 2 H 1 -1 3.9794 0 0 0.49634 0 0 514.7198139328293 146.93874536685783 661.6585592996871 0 0 0 0 0 0 0 0 0 H 0.49634 - 2 + NaN NaN 93042.3 NaN 2057 1829 3885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3890 29.038 NaN 269710 35 0 78879 0.327 + 25041 SAAAVDAGMAM 11 52 513.7151290416595 1025.4157051501188 2 513.7152709960938 MULTI HCD FTMS 0 0 0 3889 93529.609375 0.7915873654833291 3 -0.044891357421875 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 69.10491478415734 0.016192963456165197 2 [QT]AVWG{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 9 5 [QT] + + 50.755 2.8432 1.241 4.9497 4.9497 62.237 0 0 0 0 36.29116356790732 0 0 0 2.1237125054200234 0 0 0 [QT]AVWG{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 4.9497 - 112 + NaN NaN 130993.6 NaN 2058 1830 3889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3891 29.042 NaN 42362 35 0 5196.4 0.261 -1 NVEEADAAM 9 31 483.19773192037184 964.3809109075437 2 483.1974182128906 MULTI HCD FTMS 0 0 0 3889 23002.064453125 0.6038207203074123 -6 0.06439781188964844 2 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 29.081581746732265 0.1154664336125038 2 DAA{M(Oxidation (M))|F} 4 -1 46.938 0 0 4.8672 0 0 542.2339820518781 0 542.2339820518781 0 46.938200260161125 0 0 0 1.5 0 0 0 DAA{M(Oxidation (M))|F} 4.8672 + + 19 + NaN NaN 89059.5 NaN 2059 1830 3889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3892 29.046 NaN 34952 35 0 4948.1 0.261 -1 YAEQGDVQM 9 21 528.7186847075961 1055.4228164819922 2 528.7179565429688 MULTI HCD FTMS 0 0 0 3889 15954.3505859375 0.7273540512992753 -3 0.03326606750488281 3 Oxidation (M) _YAEQGDVQM(Oxidation (M))_ ENSG00000127580|ENST00000293883|WDR24 11.494710602746466 0.2610445893512368 2 VQ{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.4297 0 0 663.2504159001958 0 663.2504159001958 0 36.197887582883936 0 0 0 1 0 0 0 VQ{M(Oxidation (M))|F} 3.4297 + + 9 NaN NaN 92624.7 NaN 2060 1830 3889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3893 29.049 NaN 24583 35 0 4317.8 0.261 -1 MLQWRRRHCCF 11 23 569.9292664900935 NaN 0 570.3381958007812 PEAK HCD FTMS 0 0 0 3889 1991.9134521484375 0.3373695407669597 -1 0.013242721557617188 4 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))LQWRRRHC(Carbamidomethyl (C))C(Carbamidomethyl (C))F_ ENSG00000162630|ENST00000367434|B3GALT2 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87862.4 NaN 2061 1830 3889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3895 29.054 NaN 480090 35 0 73900 0.327 + 8464 HADHSSLTL 9 63 490.74356744680523 979.4725819604105 2 490.7434997558594 MULTI HCD FTMS 0 0 0 3894 253876.203125 1 0 0 1 Unmodified _HADHSSLTL_ ENSG00000086758|ENST00000262854|HUWE1;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 107.99703571036002 0.003269392969029945 2 [HA]DHSS{I|L}T{I|L} 9 0 + 70.829 0 0 7.2314 7.2314 95.769 0 0 0 4.762036441594191 43.420234257298276 4.762036441594191 70.82949700278292 0 1.1237125054200234 0 2.2302046884880937 0 + + [HA]DHSS{I|L}T{I|L} 7.2314 + + 179 NaN NaN 154872.5 NaN 2062 1831 3894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3896 29.059 NaN 54041 35 0 12471 0.344 + -1 FSFCYLEE 8 24 547.7284155971474 1093.4422782610948 2 547.7276000976562 MULTI HCD FTMS 0 0 0 3894 13641.607421875 0.4106229755464114 6 -0.09166526794433594 2 Carbamidomethyl (C) _FSFC(Carbamidomethyl (C))YLEE_ REV__ENSG00000003987|ENST00000180173|MTMR7;REV__nc|ENSG00000003987|Q9Y216-2|MTMR7 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87893.5 NaN 2063 1831 3894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3897 29.064 NaN 44452 35 0 9584.3 0.261 -1 SDMFMKCR 8 34 545.728145034332 1089.4417371354639 2 545.728759765625 MULTI HCD FTMS 0 0 0 3894 6814.4814453125 0.4491506659284269 2 -0.028177261352539062 3 Carbamidomethyl (C),Oxidation (M) _SDM(Oxidation (M))FMKC(Carbamidomethyl (C))R_ tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1;tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1 0.6903765706972694 0.5409681170271811 2 H[W{M(Oxidation (M))|F}] 3 -1 10.458 0 0 0.9599 0 0 601.2279747837046 0 601.2279747837046 0 10.45757490560675 0 0 0 0 0 0 0 H[W{M(Oxidation (M))|F}] 0.9599 - 4 + NaN NaN 99971.6 NaN 2064 1831 3894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3899 29.069 NaN 412550 35 0 59159 0.327 + 22316 QPIKESNSL 9 72 508.2744868159523 1014.5344206987046 2 508.2744140625 MULTI HCD FTMS 0 0 0 3898 220309.203125 1 0 0 1 Unmodified _QPIKESNSL_ ENSG00000162402|ENST00000294383|USP24 41.95555342248728 0.056367691549927025 2 [QP]{I|L}KESNS{I|L} 9 0 + 37.128 0 0 3.6596 3.6596 86.556 0 0 0 7.386189393133115 9.449689600073441 7.386189393133115 11.604705826628187 0 0.2302046884880938 0 0.5501648626366046 0.5891368308784531 + + [QP]{I|L}KESNS{I|L};[QP]{I|L}KESGGS{I|L} 3.6596;2.5158 +;- + 439 + NaN NaN 144708.3 NaN 2065 1832 3898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3900 29.074 NaN 121540 35 0 15091 0.261 + 26487 SVASTPISQR 10 32 523.2852721993746 1044.5559914655491 2 523.2849731445312 MULTI HCD FTMS 0 0 0 3898 54336.4140625 0.7450208566518531 5 -0.07688522338867188 2 Unmodified _SVASTPISQR_ chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1 26.020703789607367 0.2677231329712098 2 [VS]AST 5 5 53.328 0 0 5.1053 0 0 0 596.315960820535 596.315960820535 47.84318117920506 0 0 0 0 1.110924374808178 2 0 0 + [VS]AST 5.1053 + + 62 + NaN NaN 107979.2 NaN 2066 1832 3898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3901 29.077 NaN 13161 35 0 4315.5 0.261 + 14179 LAKIKVLILII 11 13 618.95703125 NaN 0 618.95703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LAKIKVLILII_ REV__ENSG00000005436|ENST00000321027|GCFC2;REV__nc|ENSG00000005436|P16383-2|GCFC2 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89896.6 NaN 2067 1832 3898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3903 29.083 NaN 819920 35 0 67978 0.327 + 4217 EVAQKVENA 9 82 494.2588527416918 986.5031525501836 2 494.2588806152344 MULTI HCD FTMS 0 0 0 3902 583670.375 1 0 0 1 Unmodified _EVAQKVENA_ REV__ENSG00000170759|ENST00000302418|KIF5B 85.64151623876279 0.004640175941193596 2 {[DA]|[EG]}{I|L}QKGGGE{I|L} 10 -1 + 111.22 0 0 11.274 11.274 91.485 0 0 0 17.377932014516773 16.53212513775344 16.53212513775344 3.521825181113627 0 2.1989700043360187 1.6989700043360187 0.8274509799928715 1.360924374808178 {[DA]|[EG]}{I|L}QKGGGE{I|L};{[DA]|[EG]}{I|L}QKNGE{I|L};{[DA]|[EG]}{I|L}QKGNE{I|L};{[DA]|[EG]}{I|L}[AG]KGGGE{I|L};{[DA]|[EG]}{I|L}[AG]KNGE{I|L};{[DA]|[EG]}{I|L}[AG]KGNE{I|L};{[DA]|[EG]}{I|L}QKD{[QG]|[NA]}{I|L};{[DA]|[EG]}{I|L}AGKNGE{I|L};{[QN]|[E{I|L}]|[KN]}GQKGGGE{I|L};{[DA]|[EG]}{I|L}QKD{I|L}{[QG]|[NA]} 11.274;10.917;10.786;9.9907;9.6293;9.4981;9.4137;9.2591;9.0449;8.7396 -;-;-;-;-;-;-;-;-;- 2941 NaN NaN 208849.8 NaN 2068 1833 3902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3904 29.087 NaN 39621 35 0 6267.1 0.261 + -1 CIVIDESML 9 19 548.2571283376054 1094.4997037420108 2 548.2567749023438 MULTI HCD FTMS 0 0 0 3902 12567.6259765625 0.8051554100059943 5 -0.07363700866699219 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))IVIDESM(Oxidation (M))L_ REV__ENST00000267068.5_2_13:33110836-33110986:-|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89305.2 NaN 2069 1833 3902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3905 29.091 NaN 22285 35 0 4799.9 0.261 -1 0 20 615.1587089164813 614.1514324498812 1 615.1594848632812 MULTI HCD FTMS 0 0 0 3902 11435.3427734375 0.6500973275803967 -1 0.013397216796875 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94780.1 NaN 2070 1833 3902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3906 29.094 NaN 40962 35 0 4031 0.263 + -1 KKMRKRCYVC 10 35 476.9163923497522 NaN 0 476.91650390625 PEAK HCD FTMS 0 0 0 3902 4560.0986328125 0.4244030665817535 27 -0.4589042663574219 4 2 Carbamidomethyl (C) _KKMRKRC(Carbamidomethyl (C))YVC(Carbamidomethyl (C))_ REV__ENSG00000127663|ENST00000159111|KDM4B;REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF;REV__nc|ENSG00000127663|O94953|KDM4B 0.15932191953741626 0.34004793154798674 2 A 1 -1 5.4846 0 0 0.57622 0 0 649.8681412895451 227.8863466852172 877.7544879747622 0 0 0 0 0 0 0 0 0 A 0.57622 - 1 + NaN NaN 98075.9 NaN 2071 1833 3902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3907 29.097 NaN 26557 35 0 9036.8 0.261 -1 CREDMPIF 8 17 542.2342475795384 NaN 0 542.267822265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))REDM(Oxidation (M))PIF_ ENSG00000163635|ENST00000674280|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;nc|ENSG00000163635|O15265-2|ATXN7 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86149.4 NaN 2072 1833 3902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3909 29.103 NaN 1783700 35 0 220970 0.327 + 9377 HPTDERVAL 9 75 519.2722573222529 1036.5299617113058 2 519.2723999023438 MULTI HCD FTMS 0 0 0 3908 918906.5 0.7406547804599579 3 -0.04340171813964844 1 Unmodified _HPTDERVAL_ ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU 85.64151623876279 0.004640175941193596 2 HPTDE 5 4 70.222 0 0 6.7747 0 0 0 454.2781503739369 454.2781503739369 57.91447825603967 0 0 0 0 1.305462187404089 1.2218487496163564 1.3494850021680094 0 + HPTDE 6.7747 + + 201 + NaN NaN 348889.1 NaN 2073 1834 3908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3910 29.107 NaN 51746 35 0 5289.7 0.261 -1 0 24 441.2075503092889 1320.6008215280667 3 441.2073974609375 MULTI HCD FTMS 0 0 0 3908 19621.984375 0.2083065031142959 36 -0.6052227020263672 2 NaN NaN 2 Y{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.9095 0 0 992.4602579904215 0 992.4602579904215 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 Y{M(Oxidation (M))|F} 1.9095 - 3 NaN NaN 86464.1 NaN 2074 1834 3908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3911 29.111 NaN 38320 35 0 10945 0.261 + -1 MFLAAGYYM 9 27 549.7347945545997 1097.4550361759993 2 549.7344360351562 MULTI HCD FTMS 0 0 0 3908 14258.2529296875 0.9289388207066028 18 -0.27911376953125 3 2 Oxidation (M) _M(Oxidation (M))FLAAGYYM(Oxidation (M))_ REV__ENSG00000198601|ENST00000641836|OR2M2;REV__ENSG00000228198|ENST00000641626|OR2M3 2.302733041254933 0.33356062215410776 2 {I|L}E{M(Oxidation (M))|F} 3 -1 13.2 0 0 1.2028 0 0 690.2720050254119 0 690.2720050254119 0 13.19984993812689 0 0 0 0.4247425010840047 0 0 0 {I|L}E{M(Oxidation (M))|F} 1.2028 - 5 + NaN NaN 85942.8 NaN 2075 1834 3908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3913 29.116 NaN 131480 35 0 24256 0.327 + 2416 DPNRDGHVSL 10 29 555.2702825551205 1108.526012177041 2 555.2701416015625 MULTI HCD FTMS 0 0 0 3912 43715.77734375 0.25947312893287805 8 -0.1317882537841797 1 Unmodified _DPNRDGHVSL_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 12.174745833636585 0.39723355204102767 2 D{[HG]|PP}VS{I|L} 6 4 23.901 0 0 2.1561 0 0 482.2242909162125 0 482.2242909162125 0 0.7133375178436552 0 0 0 0 0 0 0 + D{[HG]|PP}VS{I|L} 2.1561 + + 26 NaN NaN 102297.6 NaN 2076 1835 3912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3914 29.121 NaN 43973 35 0 9431.3 0.261 -1 MSSPCHIEM 9 34 533.7037206573808 1065.3928883815615 2 533.703369140625 MULTI HCD FTMS 0 0 0 3912 12299.185546875 0.6399036463387743 -9 0.12491035461425781 2 2 Oxidation (M) _M(Oxidation (M))SSPCHIEM(Oxidation (M))_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91074 NaN 2077 1835 3912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3916 29.126 NaN 49752 35 0 6734.7 0.327 -1 0 18 606.1740723882672 605.1667959216671 1 606.1737060546875 MULTI HCD FTMS 0 0 0 3915 39244.1953125 1 0 0 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91147.9 NaN 2078 1836 3915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3917 29.131 NaN 73574 35 0 9639.6 0.261 -1 QPMQPTPSM 9 27 524.725235875742 1047.4359188182839 2 524.7249755859375 MULTI HCD FTMS 0 0 0 3915 29328.50390625 0.8358556744827291 -5 0.071807861328125 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 8.745405648335112 0.2847203663274469 2 G 1 -1 3.4949 0 0 0.33366 0 0 541.7273749723839 445.6565035455688 987.3838785179528 0 0 0 0 0 0 0 0 0 G 0.33366 - 1 + NaN NaN 88039.4 NaN 2079 1836 3915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3918 29.134 NaN 40034 35 0 5049.8 0.261 + -1 EMLCKRCN 8 29 527.235971885215 1052.45739083723 2 527.2352294921875 MULTI HCD FTMS 0 0 0 3915 14698.75390625 0.9844762828683674 1 -0.019857406616210938 3 Carbamidomethyl (C) _EMLC(Carbamidomethyl (C))KRCN_ REV__ENST00000296464.8_1_4:128716968-128719754:+|nuORF 2.0597508629832335 0.5389364538378849 2 A 1 -1 6.9897 0 0 0.66413 0 0 608.2550420596893 370.1410006158813 978.3960426755707 0 0 0 0 0 0 0 0 0 A 0.66413 - 3 + NaN NaN 94430.2 NaN 2080 1836 3915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3919 29.137 NaN 46084 35 0 6497.5 0.261 + 3724 EMDILQNI 8 24 488.242631823952 NaN 0 488.2425231933594 PEAK HCD FTMS 0 0 0 3915 12996.3603515625 0.6121488070656751 -8 0.11168289184570312 4 Unmodified _EMDILQNI_ REV__ENSG00000149600|ENST00000278980|COMMD7;REV__ENST00000610160.1_1_20:31291624-31315937:-|nuORF;REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86774.2 NaN 2081 1836 3915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3920 29.141 NaN 12383 35 0 3394.5 0.261 -1 RKQGLCCTYC 10 13 644.785888671875 NaN 0 644.785888671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _RKQGLCC(Carbamidomethyl (C))TYC(Carbamidomethyl (C))_ ENSG00000058866|ENST00000265022|DGKG;ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-2|DGKG;nc|ENSG00000058866|P49619-3|DGKG 0.4007161486938917 0.3398413315442166 2 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.27143 0 0 959.7157076154311 177.7838533990844 1137.4995610145156 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.27143 - 1 + NaN NaN 80384.5 NaN 2082 1836 3915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3922 29.146 NaN 236980 35 0 23204 0.327 + 9245 HPLSDHEATL 10 51 560.275140829622 1118.535728726044 2 560.2750244140625 MULTI HCD FTMS 0 0 0 3921 118379.5625 0.018971630992560683 57 -0.9452095031738281 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 81.89019881105858 0.0034965057646611547 2 EAT{I|L} 4 6 44.412 0 0 3.9706 0 0 686.312791892775 0 686.312791892775 0 12.972287753157516 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.9706 + + 54 NaN NaN 135874.8 NaN 2083 1837 3921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3923 29.151 NaN 42946 35 0 9898.5 0.262 -1 CYRACFRQCV 10 21 454.8670621712361 NaN 0 454.8669738769531 PEAK HCD FTMS 0 0 0 3921 10244.0283203125 0.6074612462693422 10 -0.16881179809570312 2 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106224.1 NaN 2084 1837 3921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3925 29.156 NaN 97248 35 0 14506 0.327 + 3246 EDSAWLGFT 9 34 513.2314073885711 NaN 0 513.2415771484375 PEAK HCD FTMS 0 0 0 3924 1484.353271484375 0.42903961886046255 5 -0.0916595458984375 1 Unmodified _EDSAWLGFT_ ENST00000357640.8_1_1:111743121-111743307:-|nuORF 7.289230182591677 0.2599242500475609 2 SA 2 7 12.959 0 0 1.265 0 0 244.0686382531665 619.2887667291624 863.357404982329 0 0 0 0 0 0 0 0.5 0 + SA 1.265 + + 7 + NaN NaN 112867.6 NaN 2085 1838 3924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3926 29.161 NaN 27451 35 0 3898.5 0.261 -1 LRTWRMCSCS 10 24 452.8699333952826 NaN 0 452.8694763183594 PEAK HCD FTMS 0 0 0 3924 12265.6171875 0.551899405196189 -111 1.6943893432617188 2 2 Carbamidomethyl (C) _LRTWRMC(Carbamidomethyl (C))SC(Carbamidomethyl (C))S_ ENST00000445059.3_1_10:69770293-69770395:-|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95832.4 NaN 2086 1838 3924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3927 29.164 NaN 28413 35 0 5589.9 0.261 + 35340 YWTFLNDFMM 10 26 456.53058308080756 1366.5699198426228 3 456.8642883300781 MULTI HCD FTMS 0 0 0 3924 6246.83544921875 0.27433181373726284 14 -0.22556304931640625 3 Unmodified _YWTFLNDFMM_ ENST00000518047.5_1_5:140961898-140962839:-|nuORF 0.13989180515190558 0.47456323509232307 2 R 1 10 3.4949 0 0 0.25574 0 0 1025.9475271197696 181.49050317935783 1207.4380302991274 0 0 0 0 0 0 0 0 0 R 0.25574 - 1 + NaN NaN 87178.7 NaN 2087 1838 3924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3928 29.167 NaN 23210 35 0 5636.8 0.261 + -1 RDLNQRCK 8 17 545.2819769384524 1088.5494009437048 2 545.7850952148438 MULTI HCD FTMS 0 0 0 3924 8855.7353515625 1 0 0 4 Carbamidomethyl (C) _RDLNQRC(Carbamidomethyl (C))K_ REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83857.2 NaN 2088 1838 3924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3929 29.171 NaN 9582.9 35 0 3792.6 0.261 -1 MWAMWERLP 9 8 639.295166015625 NaN 0 639.295166015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))WAMWERLP_ ENST00000587682.5_1_19:44470418-44470445:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83861.3 NaN 2089 1838 3924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3931 29.176 NaN 55859 35 0 4715.5 0.411 + 19641 NVEEADAAM 9 45 483.19773192037184 964.3809109075437 2 483.1974792480469 MULTI HCD FTMS 0 0 0 3930 31125.00390625 0.8170537177887789 3 -0.04502296447753906 1 Oxidation (M) _NVEEADAAM(Oxidation (M))_ ENSG00000177733|ENST00000314940|HNRNPA0 89.40071534611396 0.0045416704840156395 2 {[NV]|[RG]}EEADAA{M(Oxidation (M))|F} 9 0 + 74.619 0 0 7.7375 7.7375 96.757 0 0 0 0.17220322351953143 0.17220322351953143 0.17220322351953143 74.61934710801621 0 2.774227503252014 0 0.3054621874040891 0 + + {[NV]|[RG]}EEADAA{M(Oxidation (M))|F} 7.7375 + + 84 + NaN NaN 99640.3 NaN 2090 1839 3930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3933 29.184 NaN 211800 35 0 33179 0.327 + 8465 HADHSSLTL 9 41 490.74356744680523 979.4725819604105 2 490.74346923828125 MULTI HCD FTMS 0 0 0 3932 95732.3671875 0.37708286956050246 9 -0.15418052673339844 1 Unmodified _HADHSSLTL_ ENSG00000086758|ENST00000262854|HUWE1;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 46.020951573049366 0.037705236580089195 2 SS{I|L}T{I|L} 5 4 48.175 0 0 4.9185 0 0 460.18272597480626 0 460.18272597480626 0 37.2062251842808 0 0 0 0.5 0 1.4247425010840047 0 + SS{I|L}T{I|L} 4.9185 + + 37 NaN NaN 117267.3 NaN 2091 1840 3932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3934 29.189 NaN 280060 35 0 50900 0.261 + 2670 DVHFDSKVK 9 39 537.7821938063518 1073.5498346795034 2 537.7659912109375 MULTI HCD FTMS 0 0 0 3932 5073.59619140625 0.4408670515816646 6 -0.1104583740234375 2 Unmodified _DVHFDSKVK_ ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant 2.0597508629832335 0.3354026079994024 2 P{I|L} 2 9 17.959 0 0 1.6728 0 0 845.425584861525 0 845.425584861525 0 17.95880017344075 0 0 0 0 0 0 0 P{I|L} 1.6728 - 5 NaN NaN 140216.6 NaN 2092 1840 3932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3935 29.192 NaN 33942 35 0 4457.7 0.261 -1 MSSPCHIEM 9 23 533.7037206573808 1065.3928883815615 2 533.7041015625 MULTI HCD FTMS 0 0 0 3932 12916.1298828125 0.6720021075458066 -4 0.05811500549316406 3 2 Oxidation (M) _M(Oxidation (M))SSPCHIEM(Oxidation (M))_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 7.289230182591677 0.29575926068275815 2 E{M(Oxidation (M))|F} 2 -1 21.198 0 0 1.9897 0 0 771.2987244184741 0 771.2987244184741 0 21.197887582883936 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 1.9897 + + 3 + NaN NaN 90291.3 NaN 2093 1840 3932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3936 29.196 NaN 31378 35 0 4896.7 0.261 -1 YAEQGDVQM 9 28 528.7186847075961 1055.4228164819922 2 528.7184448242188 MULTI HCD FTMS 0 0 0 3932 10561.75 0.4815070102622236 7 -0.13055419921875 4 Oxidation (M) _YAEQGDVQM(Oxidation (M))_ ENSG00000127580|ENST00000293883|WDR24 10.799506525563784 0.2670509983294061 2 VQ{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.4297 0 0 663.2521229474625 0 663.2521229474625 0 36.197887582883936 0 0 0 1 0 0 0 VQ{M(Oxidation (M))|F} 3.4297 + + 9 NaN NaN 86534.6 NaN 2094 1840 3932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3937 29.199 NaN 38150 35 0 7798.8 0.261 + 30201 VHYKTNPH 8 26 498.25593575348415 NaN 0 498.25531005859375 PEAK HCD FTMS 0 0 0 3932 6133.35791015625 0.8105444651543656 2 -0.036777496337890625 5 Unmodified _VHYKTNPH_ REV__ENSG00000184144|ENST00000331830|CNTN2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87811.7 NaN 2095 1840 3932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3939 29.204 NaN 109140 35 0 18028 0.327 + 22347 QPLNKSESI 9 46 508.2744868159523 1014.5344206987046 2 508.2742614746094 MULTI HCD FTMS 0 0 0 3938 48600.703125 0.2206022373809991 9 -0.15413856506347656 1 Unmodified _QPLNKSESI_ REV__ENSG00000090060|ENST00000216277|PAPOLA;REV__nc|ENSG00000090060|P51003-2|PAPOLA 10.073929032068715 0.27331982688540024 2 SN 2 -1 9.464 0 0 0.93284 0 0 148.12366738014833 662.3173922174436 810.4410595975919 0 0 0 0 0 0 0 0 0 SN 0.93284 - 41 + NaN NaN 98250.1 NaN 2096 1841 3938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3940 29.209 NaN 75007 35 0 8179.4 0.261 + -1 LRNRNMRNDD 10 36 440.54617248998744 1318.6166880701624 3 440.5460205078125 MULTI HCD FTMS 0 0 0 3938 42925.26953125 0.8677836246669863 -3 0.048061370849609375 2 Oxidation (M) _LRNRNM(Oxidation (M))RNDD_ REV__ENSG00000157625|ENST00000288422|TAB3;REV__nc|ENSG00000157625|Q8N5C8-2|TAB3 1.7422754331352037 0.46608156381052757 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108298.1 NaN 2097 1841 3938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3941 29.212 NaN 89443 35 0 9535 0.261 + 21759 QAEQGQQEL 9 32 515.7438632357741 1029.4731735383482 2 515.7438354492188 MULTI HCD FTMS 0 0 0 3938 37926.86328125 0.25726047901811705 -6 0.08819007873535156 3 Unmodified _QAEQGQQEL_ ENSG00000237649|ENST00000428849|KIFC1 23.80106514851385 0.15472041655325736 2 Q{[QG]|[NA]}QE{I|L} 6 3 44.213 0 0 4.2947 0 0 328.137987205275 0 328.137987205275 0 44.21327198560853 0 0 0 1.8807196863200843 0 0 0 + Q{[QG]|[NA]}QE{I|L} 4.2947 + + 35 NaN NaN 109307.3 NaN 2098 1841 3938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3942 29.216 NaN 32827 35 0 9932.3 0.261 + -1 VHDGPHCP 8 17 480.70237333476905 NaN 0 480.70245361328125 PEAK HCD FTMS 0 0 0 3938 4513.60986328125 0.47612889528131447 4 -0.07369613647460938 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))VHDGPHC(Carbamidomethyl (C))P_ REV__ENST00000372684.7_1_1:41107589-41113375:-|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84634.4 NaN 2099 1841 3938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3944 29.221 NaN 206180 35 0 20245 0.326 + 109 ADLDVGRIE 9 46 494.2588527416918 986.5031525501836 2 494.25885009765625 MULTI HCD FTMS 0 0 0 3943 173298.515625 0.29691161835136826 9 -0.14745330810546875 1 Unmodified _ADLDVGRIE_ REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 47.748688679222035 0.03472022231463587 2 {[DA]|[EG]}{I|L}QKNGE{I|L} 9 -1 + 94.707 0 0 9.6002 9.6002 93.892 0 0 0 15.31382030599653 15.31382030599653 15.31382030599653 9.208187539523749 0 2.3494850021680094 1.5228787452803376 0.2614393726401688 1.1307196863200843 {[DA]|[EG]}{I|L}QKNGE{I|L};{[DA]|[EG]}{I|L}QKGGGE{I|L};{[DA]|[EG]}{I|L}[AG]KNGE{I|L};{[DA]|[EG]}{I|L}QKD{[QG]|[NA]}{I|L};{[QN]|[E{I|L}]|[KN]}GQKNGE{I|L};{[DA]|[EG]}{I|L}[AG]KGGGE{I|L};{[QN]|[E{I|L}]|[KN]}GQKGGGE{I|L};{[QN]|[E{I|L}]|[KN]}G[AG]KNGE{I|L};{[DA]|[EG]}{I|L}[AG]KD{[QG]|[NA]}{I|L};{[DA]|[EG]}{I|L}D[RV]GE{I|L} 9.6002;8.6668;8.2363;7.8044;7.5497;7.3073;6.6163;6.6163;6.4404;6.2276 -;-;-;-;-;-;-;-;-;- 279 NaN NaN 129046.2 NaN 2100 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3945 29.226 NaN 51201 35 0 15170 0.261 + 30812 VPVLMQCR 8 21 473.2537201183267 944.4928873034535 2 473.2532958984375 MULTI HCD FTMS 0 0 0 3943 27220.89453125 0.77818695384357 -4 0.06488609313964844 2 Unmodified _VPVLMQCR_ REV__nc|ENSG00000185842|Q0VDD8|DNAH14 5.230669730166228 0.5342319408533849 2 VP 2 -1 33.979 0 0 3.5976 0 0 0 745.3472384088499 745.3472384088499 33.979400086720375 0 0 0 0 0 1.3010299956639813 0 0 VP 3.5976 + + 2 + NaN NaN 86296.9 NaN 2101 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3946 29.229 NaN 37363 35 0 4241.4 0.261 -1 TEYIYHCNVQ 10 22 442.8656621363012 NaN 0 442.8558654785156 PEAK HCD FTMS 0 0 0 3943 1486.5538330078125 0.8281893216115004 1 -0.026773452758789062 3 Carbamidomethyl (C) _TEYIYHC(Carbamidomethyl (C))NVQ_ ENSG00000011198|ENST00000644371|ABHD5 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93809.1 NaN 2102 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3947 29.232 NaN 35344 35 0 6114.5 0.261 + 12150 KKKKKKKKKSF 11 28 469.3284273439453 NaN 0 469.3287048339844 PEAK HCD FTMS 0 0 0 3943 8650.599609375 0.47352240843352006 49 -0.8265762329101562 4 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101837.3 NaN 2103 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3948 29.236 NaN 25656 35 0 2919.8 0.261 + 26506 SVIESPSTNR 10 22 545.2819769384524 1088.5494009437048 2 545.27978515625 MULTI HCD FTMS 0 0 0 3943 9950.734375 0.8610695697902219 -7 0.10501480102539062 5 Unmodified _SVIESPSTNR_ ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant 5.296884461304476 0.4472664531305844 2 {I|L}[PA] 3 8 4.1812 0 0 0.38411 0 0 789.3658815118673 0 789.3658815118673 0 -2.80848766326997 -2.80848766326997 0 0 0 0 0 0 {I|L}[PA] 0.38411 - 10 + NaN NaN 90681 NaN 2104 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3949 29.239 NaN 91846 35 0 16411 0.264 + 10250 IIPHSEPWPQ 10 45 401.87790372022243 NaN 0 401.87762451171875 PEAK HCD FTMS 0 0 0 3943 2101.441650390625 0.2801889913117538 37 -0.6508274078369141 6 Unmodified _IIPHSEPWPQ_ REV__ENSG00000130224|ENST00000317135|LRCH2;REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2 3.944395688203298 0.33680843299986807 2 G 1 -1 5.4846 0 0 0.68408 0 0 209.44024239962613 532.2431124322874 741.6833548319134 0 0 0 0 0 0 0 0 0 G 0.68408 - 2 + NaN NaN 100926.1 NaN 2105 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3950 29.242 NaN 17275 35 0 3087.5 0.261 -1 YHRHCFRCRRC 11 13 569.92797201553 1706.76208664679 3 569.738037109375 MULTI HCD FTMS 0 0 0 3943 3317.669921875 0.5419702222946489 -8 0.11843681335449219 7 3 Carbamidomethyl (C) _YHRHC(Carbamidomethyl (C))FRC(Carbamidomethyl (C))RRC(Carbamidomethyl (C))_ ENSG00000100139|ENST00000215957|MICALL1 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89468.3 NaN 2106 1842 3943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3952 29.248 NaN 16758 35 0 4499.5 0.327 + 33186 YEVTLEIRR 9 16 589.8299981674942 1177.6454434017883 2 589.8294067382812 MULTI HCD FTMS 0 0 0 3951 6092.97412109375 0.6764769947932828 -2 0.043598175048828125 1 Unmodified _YEVTLEIRR_ REV__ENST00000335922.9_1_8:38297880-38325749:-|nuORF;REV__ENST00000470826.5_1_8:38281789-38325791:-|nuORF;REV__ENST00000496296.5_1_8:38281789-38325791:-|nuORF;REV__ENST00000530701.1_1_8:38279448-38315045:-|nuORF;REV__nc|ENSG00000077782|P11362-21|FGFR1 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104940 NaN 2107 1843 3951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3953 29.252 NaN 47848 35 0 10902 0.261 -1 CHATAMCHH 9 18 542.1993924989555 1082.384232064711 2 542.1992797851562 MULTI HCD FTMS 0 0 0 3951 9020.8095703125 0.44689937103327787 -9 0.14521026611328125 2 Carbamidomethyl (C),Oxidation (M) _CHATAM(Oxidation (M))C(Carbamidomethyl (C))HH_ ENSG00000139865|ENST00000553443|TTC6;nc|ENSG00000139865|Q86TZ1-2|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98476.8 NaN 2108 1843 3951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3955 29.258 NaN 71310 35 0 10724 0.327 -1 QPMQPTPSM 9 27 524.725235875742 1047.4359188182839 2 524.7251586914062 MULTI HCD FTMS 0 0 0 3954 31282.953125 0.8915570316062471 3 -0.05684089660644531 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 9.38312468134398 0.279288223203164 2 G[PS]{M(Oxidation (M))|F} 4 -1 19.693 0 0 1.8801 0 0 641.2763539044937 0 641.2763539044937 0 15.088643834802156 0 0 0 0.5 0 0 0 G[PS]{M(Oxidation (M))|F} 1.8801 - 2 NaN NaN 106339 NaN 2109 1844 3954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3956 29.262 NaN 32449 35 0 5279.4 0.261 -1 CYLIYFEI 8 19 553.2671411611951 1104.5197293891902 2 553.2677612304688 MULTI HCD FTMS 0 0 0 3954 13346.75 0.6977467905705688 -87 1.3791236877441406 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CYLIYFEI_ ENST00000313071.6_1_14:29235028-29235118:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87320.3 NaN 2110 1844 3954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3957 29.266 NaN 78801 35 0 15396 0.262 + -1 EPEMAEWAWGS 11 31 436.8445768383805 1307.5119011153415 3 436.8446044921875 MULTI HCD FTMS 0 0 0 3954 10095.6337890625 0.24039646947292678 -5 0.08195877075195312 3 Oxidation (M) _EPEM(Oxidation (M))AEWAWGS_ REV__ENST00000471836.1_1_22:44577677-44581773:+|nuORF;REV__ENST00000475485.6_1_22:44577677-44582522:+|nuORF 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91869.1 NaN 2111 1844 3954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3958 29.269 NaN 35986 35 0 5844.6 0.261 -1 MPVQNQMTM 9 23 556.2323303517392 1110.4501077702782 2 556.2328491210938 MULTI HCD FTMS 0 0 0 3954 16681.41796875 1 0 0 4 2 Oxidation (M) _MPVQNQM(Oxidation (M))TM(Oxidation (M))_ ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90413.4 NaN 2112 1844 3954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3959 29.273 NaN 37497 35 0 10994 0.261 + 26507 SVIESPSTNR 10 20 545.2819769384524 1088.5494009437048 2 545.7837524414062 MULTI HCD FTMS 0 0 0 3954 4787.9443359375 0.5406602778720931 6 -0.10037803649902344 5 Unmodified _SVIESPSTNR_ ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant 4.189502756095605 0.45312800054222196 2 SE{I|L}[PA] 5 7 22.218 0 0 2.0411 0 0 573.2843495099625 0 573.2843495099625 0 22.21848749616356 0 0 0 0 0 0 0 SE{I|L}[PA] 2.0411 - 6 NaN NaN 86696 NaN 2113 1844 3954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3961 29.278 NaN 159410 35 0 36775 0.327 + 18767 NAAHQEALM 9 40 492.73200618377064 983.4494594343413 2 492.7320251464844 MULTI HCD FTMS 0 0 0 3960 101782.1171875 0.6570063981428885 -2 0.03009796142578125 1 Unmodified _NAAHQEALM_ ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF 18.1463463914782 0.20357593197100715 2 A{I|L}M 3 6 36.198 0 0 3.6807 0 0 650.27836806465 0 650.27836806465 0 36.197887582883936 0 0 0 1 0 0 0 + A{I|L}M 3.6807 + + 12 NaN NaN 108789.8 NaN 2114 1845 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3962 29.283 NaN 202590 35 0 19069 0.261 + 9246 HPLSDHEATL 10 42 560.275140829622 1118.535728726044 2 560.2750854492188 MULTI HCD FTMS 0 0 0 3960 100970.765625 0.01618167921911209 65 -1.0626106262207031 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 65.23502041540118 0.023231415588018726 2 EAT{I|L} 4 6 42.907 0 0 3.836 0 0 686.312303611525 0 686.312303611525 0 12.105319037595876 0 0 0 0.4247425010840047 0 1.4247425010840047 0 + EAT{I|L} 3.836 + + 61 NaN NaN 120359 NaN 2115 1845 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3963 29.286 NaN 21405 35 0 5559.5 0.261 -1 0 13 606.1740723882672 605.1667959216671 1 606.1738891601562 MULTI HCD FTMS 0 0 0 3960 12101.109375 0.30835412163861015 9 -0.1406536102294922 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94078.6 NaN 2116 1845 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3964 29.289 NaN 15580 35 0 3995.4 0.261 -1 YHRHCFRCRRC 11 15 569.92797201553 1706.76208664679 3 570.2613525390625 MULTI HCD FTMS 0 0 0 3960 2198.7216796875 0.3135541586026361 -2 0.03009796142578125 4 3 Carbamidomethyl (C) _YHRHC(Carbamidomethyl (C))FRC(Carbamidomethyl (C))RRC(Carbamidomethyl (C))_ ENSG00000100139|ENST00000215957|MICALL1 0 0.41892066650488113 2 V 1 -1 5.4846 0 0 0.32134 0 0 1037.9322049102648 566.7329195611936 1604.6651244714585 0 0 0 0 0 0 0 0 0 V 0.32134 - 1 + NaN NaN 98873.6 NaN 2117 1845 3960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3966 29.295 NaN 189220 35 0 55125 0.327 + 18808 NADPQAVTM 9 28 481.716065843982 961.417578754764 2 481.7157897949219 MULTI HCD FTMS 0 0 0 3965 86073.5 0.02988803554055794 -14 0.2256011962890625 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 47.594388314883695 0.03493607795751234 2 AVT{M(Oxidation (M))|F} 4 5 51.414 0 0 5.3478 0 0 525.218312252614 0 525.218312252614 0 51.414412723804546 0 0 0 2 0 0.4247425010840047 0 + AVT{M(Oxidation (M))|F} 5.3478 + + 81 + NaN NaN 112582 NaN 2118 1846 3965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3967 29.299 NaN 69955 35 0 7850.4 0.261 + -1 DETSSNLIM 9 26 513.2268382450972 NaN 0 513.2413330078125 PEAK HCD FTMS 0 0 0 3965 5829.46337890625 1 0 0 2 Oxidation (M) _DETSSNLIM(Oxidation (M))_ REV__ENSG00000144891|ENST00000349243|AGTR1 3.5964929083625545 0.27781873954207675 2 SAK 3 -1 17.307 0 0 1.6894 0 0 244.05876574625046 491.2019442193969 735.2607099656474 0 0 0 0 0 0 0 0.5 0 SAK 1.6894 - 6 + NaN NaN 96793.7 NaN 2119 1846 3965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3968 29.303 NaN 39551 35 0 4975.1 0.261 + 2514 DSKELGKCMV 10 22 555.2702825551205 1108.526012177041 2 555.2700805664062 MULTI HCD FTMS 0 0 0 3965 8950.7529296875 0.05312681164763008 19 -0.32701683044433594 3 Unmodified _DSKELGKCMV_ REV__ENSG00000144426|ENST00000683969|NBEAL1;REV__NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1;REV__nc|ENSG00000144426|Q6ZS30|NBEAL1 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100569.5 NaN 2120 1846 3965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3969 29.306 NaN 67357 35 0 15609 0.261 + -1 RENVDPLM 8 34 495.2394537408417 988.4643545484835 2 495.2394104003906 MULTI HCD FTMS 0 0 0 3965 18852.703125 0.8810996392931328 -8 0.1385669708251953 4 Oxidation (M) _RENVDPLM(Oxidation (M))_ REV__ENSG00000152404|ENST00000282251|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-2|CWF19L2;REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 14.838274106304384 0.4846187982323419 2 {I|L}{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.9808 0 0 710.3356190412125 0 710.3356190412125 0 29.463950151760656 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.9808 + + 12 NaN NaN 95470.9 NaN 2121 1846 3965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3970 29.309 NaN 15730 35 0 3526.5 0.261 + -1 DHMNFHWYD 9 17 640.7457080160933 NaN 0 640.7451171875 PEAK HCD FTMS 0 0 0 3965 3961.0146484375 0.6505425292315415 1 -0.0200958251953125 5 Oxidation (M) _DHM(Oxidation (M))NFHWYD_ REV__ENSG00000206530|ENST00000393845|CFAP44;REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 0.5247636613948944 0.2927039108006614 2 C(Carbamidomethyl (C)) 1 -1 0.71334 0 0 0.055752 0 0 938.2774745265241 178.14901148013908 1116.4264860066633 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.055752 - 1 + NaN NaN 99527.4 NaN 2122 1846 3965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3972 29.315 NaN 57371 35 0 6204.3 0.327 + 33372 YGHPGYPAL 9 24 487.7396298268639 NaN 0 487.7398376464844 PEAK HCD FTMS 0 0 0 3971 13816.8837890625 0.717366140393254 -4 0.06700325012207031 1 Unmodified _YGHPGYPAL_ ENSG00000111077|ENST00000314250|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2 5.230669730166228 0.26989974671959066 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84819.9 NaN 2123 1847 3971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3973 29.319 NaN 85995 35 0 12477 0.261 + 19724 NYARGHYTI 9 25 547.7726205951931 1093.530688257186 2 547.7720336914062 MULTI HCD FTMS 0 0 0 3971 26025.84375 0.16820621801549757 -7 0.13055419921875 2 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 24.020572477871973 0.15282392193088168 2 YT{I|L} 3 6 34.253 0 0 3.1323 0 0 698.3251157342766 0 698.3251157342766 0 34.25250945692483 0 0 0 0.3807196863200844 0 0.4247425010840047 0 + YT{I|L} 3.1323 + + 7 NaN NaN 114757.2 NaN 2124 1847 3971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3974 29.323 NaN 33219 35 0 9970.8 0.261 -1 TPGVCMEKM 9 22 526.734533725765 NaN 0 526.734375 PEAK HCD FTMS 0 0 0 3971 9638.9296875 0.5876666186781534 1 -0.013467788696289062 3 Carbamidomethyl (C) _TPGVC(Carbamidomethyl (C))MEKM_ tr|U7T5M9|U7T5M9_FUSNUMyb-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00112PE=4SV=1 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83663.7 NaN 2125 1847 3971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3976 29.328 NaN 46767 35 0 5581.4 0.327 -1 FRVRCTSKR 9 31 403.8921830631444 1208.6547197896332 3 403.8919982910156 MULTI HCD FTMS 0 0 0 3975 1102.189697265625 0.12157638903849882 1 -0.010158538818359375 1 Carbamidomethyl (C) _FRVRC(Carbamidomethyl (C))TSKR_ ENSG00000117697|ENST00000366977|NSL1;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 2.735195868890462 0.3302822318919627 2 R 1 -1 15.485 0 0 1.2811 0 0 1034.5431455482253 0 1034.5431455482253 0 15.484550065040281 0 0 0 0 0 0 0 R 1.2811 + + 2 + NaN NaN 103224.4 NaN 2126 1848 3975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3977 29.333 NaN 31423 35 0 10526 0.261 + 34635 YPRSRLGGSH 10 17 565.2967379024932 1128.5789228717863 2 565.2964477539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YPRSRLGGSH_ ENST00000512101.5_1_11:67058196-67058343:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88662.2 NaN 2127 1848 3975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3979 29.338 NaN 257670 35 0 29765 0.327 + 21760 QAEQGQQEL 9 53 515.7438632357741 1029.4731735383482 2 515.7437133789062 MULTI HCD FTMS 0 0 0 3978 125414.1875 0.8506929168558065 2 -0.030050277709960938 1 Unmodified _QAEQGQQEL_ ENSG00000237649|ENST00000428849|KIFC1 90.13494162714682 0.004522430935000059 2 [QA]EQ{[QG]|[NA]}QE{I|L} 9 0 + 71.348 0 0 6.9306 6.9306 86.299 0 0 0 1.7609125905568135 8.566147098514705 1.7609125905568135 1.7609125905568135 0 1.9247425010840047 0 0.3494850021680094 1.274227503252014 + + [QA]EQ{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ{[QG]|[NA]}QE{I|L};[DV]NQ{[QG]|[NA]}QE{I|L};[QA]EQ{[QG]|[NA]}[AG]E{I|L};[QA]E[AG]{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A[AG]{[QG]|[NA]}QE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AQ{[QG]|[NA]}[AG]E{I|L};[DV]N[AG]{[QG]|[NA]}QE{I|L};[DV]GGQ{[QG]|[NA]}QE{I|L};[DV]NQ{[QG]|[NA]}[AG]E{I|L} 6.9306;6.7595;6.0985;6.0361;6.0361;5.865;5.865;5.204;5.204;4.8645 +;-;-;-;-;-;-;-;-;- + 220 NaN NaN 126144 NaN 2128 1849 3978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3980 29.343 NaN 135500 35 0 15563 0.262 + 4731 EYSKQMQRF 9 42 406.1975913931136 1215.570944779541 3 406.1973876953125 MULTI HCD FTMS 0 0 0 3978 38164.4296875 0.5794545540597429 -2 0.023626327514648438 2 Unmodified _EYSKQMQRF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2 8.97624648632007 0.2828035605319045 2 [YE]SKQMQ[R{M(Oxidation (M))|F}] 9 0 + 29.843 0 0 2.4551 2.4551 85.132 0 0 0 4.436974992327126 4.137342758552695 4.137342758552695 9.208187539523752 0 0 0 0 0 + + [YE]SKQMQ[R{M(Oxidation (M))|F}];[YE]SKQM[AG][R{M(Oxidation (M))|F}];[YE]SK[AG]MQ[R{M(Oxidation (M))|F}];[YE]SK[AG]M[AG][R{M(Oxidation (M))|F}] 2.4551;1.6975;1.6975;0.94362 +;-;-;- + 125 + NaN NaN 96407.5 NaN 2129 1849 3978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3981 29.346 NaN 60219 35 0 5547.2 0.261 -1 LFHMDLLRDC 10 40 440.54617248998744 1318.6166880701624 3 440.5461730957031 MULTI HCD FTMS 0 0 0 3978 26334.892578125 0.532390099962537 5 -0.08012199401855469 3 Carbamidomethyl (C) _LFHMDLLRDC(Carbamidomethyl (C))_ ENSG00000185453|ENST00000614654|ZSWIM9 2.843284757254958 0.46025374642504374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97467.1 NaN 2130 1849 3978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3982 29.35 NaN 52894 35 0 5787.7 0.261 + 31321 VWQMMAPL 8 24 488.242631823952 NaN 0 488.241943359375 PEAK HCD FTMS 0 0 0 3978 18112.451171875 0.853124650130647 5 -0.08012199401855469 4 Unmodified _VWQMMAPL_ REV__ENSG00000182836|ENST00000377801|PLCXD3 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103049.2 NaN 2131 1849 3978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3983 29.353 NaN 19957 35 0 4492.4 0.261 + -1 SWCWRLWHWYQ 11 17 569.92797201553 1706.76208664679 3 570.2609252929688 MULTI HCD FTMS 0 0 0 3978 5033.9228515625 0.717875053843376 2 -0.030050277709960938 5 Carbamidomethyl (C) _SWC(Carbamidomethyl (C))WRLWHWYQ_ REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF 0.09484139111097674 0.41850472438158626 2 M 1 -1 6.9897 0 0 0.40953 0 0 1155.849502273546 416.8379000299438 1572.6874023034898 0 0 0 0 0 0 0 0 0 M 0.40953 - 1 + NaN NaN 94449.1 NaN 2132 1849 3978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3985 29.359 NaN 48696 35 0 11969 0.326 + -1 VPCLRMGL 8 25 473.2537201183267 944.4928873034535 2 473.25323486328125 MULTI HCD FTMS 0 0 0 3984 26375.50390625 0.7540190502310926 4 -0.060211181640625 1 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))LRMGL_ REV__ENST00000466589.5_1_22:41623698-41626252:+|nuORF 8.593279151180031 0.5292430274356741 2 VP 2 -1 25.969 0 0 2.7495 0 0 0 745.3497408502561 745.3497408502561 25.48455006504028 0 0 0 0 0.5 0 0 0 VP 2.7495 + + 3 + NaN NaN 102175.4 NaN 2133 1850 3984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3986 29.363 NaN 27037 35 0 10198 0.261 + 33745 YLEQLRKN 8 15 532.2984080770293 1062.5822632208585 2 532.29833984375 MULTI HCD FTMS 0 0 0 3984 6759.8154296875 0.41746172476520665 -1 0.019910812377929688 2 Unmodified _YLEQLRKN_ REV__CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant;REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;REV__ENSG00000135837|ENST00000367607|CEP350 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89517.2 NaN 2134 1850 3984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3988 29.368 NaN 150380 35 0 28726 0.327 -1 TMGHMMEM 8 45 508.1715753515778 1014.3285977699556 2 508.17156982421875 MULTI HCD FTMS 0 0 0 3987 63516.62109375 0.2297243469742811 -10 0.1642780303955078 1 3 Oxidation (M) _TM(Oxidation (M))GHM(Oxidation (M))M(Oxidation (M))EM_ ENSG00000146592|ENST00000357727|CREB5;nc|ENSG00000146592|Q02930-2|CREB5;nc|ENSG00000146592|Q02930-3|CREB5;nc|ENSG00000146592|Q02930-4|CREB5 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 119181.9 NaN 2135 1851 3987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3989 29.373 NaN 24430 35 0 5539.5 0.261 + 26508 SVIESPSTNR 10 17 545.2819769384524 1088.5494009437048 2 545.2806396484375 MULTI HCD FTMS 0 0 0 3987 6634.56689453125 0.5741107586964879 2 -0.03333091735839844 2 Unmodified _SVIESPSTNR_ ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant 2.498486711656943 0.462078817294651 2 S 1 9 6.9897 0 0 0.64211 0 0 428.2319093438985 570.2631319635374 998.4950413074359 0 0 0 0 0 0 0 0 0 + S 0.64211 + + 2 + NaN NaN 88893.9 NaN 2136 1851 3987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3990 29.376 NaN 31389 35 0 7357 0.261 -1 NGGWKMWSA 9 19 526.734533725765 NaN 0 526.7341918945312 PEAK HCD FTMS 0 0 0 3987 13001.373046875 0.792668188724176 5 -0.09019851684570312 3 Oxidation (M) _NGGWKM(Oxidation (M))WSA_ ENST00000558221.1_1_15:91383052-91384515:+|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84030.8 NaN 2137 1851 3987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3992 29.382 NaN 62162 35 0 9634.4 0.327 -1 QPMQPTPSM 9 25 524.725235875742 1047.4359188182839 2 524.7255859375 MULTI HCD FTMS 0 0 0 3991 27683.228515625 0.7889657009697048 11 -0.20249557495117188 1 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 8.745405648335112 0.2847203663274469 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107184.3 NaN 2138 1852 3991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3993 29.386 NaN 23544 35 0 4903.8 0.261 + 12709 KWVRNLRP 8 16 534.8243126407024 1067.6340723482047 2 534.82421875 MULTI HCD FTMS 0 0 0 3991 11132.5615234375 0.30962353926370295 7 -0.14984130859375 2 Unmodified _KWVRNLRP_ REV__ENSG00000187231|ENST00000428443|SESTD1;REV__ENST00000446758.5_1_2:179974628-179981501:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95391.9 NaN 2139 1852 3991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3994 29.39 NaN 62328 35 0 8440 0.261 + 4126 ETGYVVER 8 29 476.7406296146963 951.4667062961926 2 476.7400207519531 MULTI HCD FTMS 0 0 0 3991 15162.5458984375 0.5023299466670756 -6 0.08699607849121094 3 Unmodified _ETGYVVER_ ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1 6.2057823575117 0.5327852213979698 2 VVER 4 4 24.157 0 0 2.5389 0 0 450.1759480948238 0 450.1759480948238 0 9.463950151760656 0 0 0 0 0 0 0 + VVER 2.5389 + + 18 + NaN NaN 90912.6 NaN 2140 1852 3991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3995 29.393 NaN 45681 35 0 16080 0.261 + -1 PYCFCSYSG 9 17 542.1993924989555 1082.384232064711 2 542.1995239257812 MULTI HCD FTMS 0 0 0 3991 20185.326171875 1 0 0 4 Carbamidomethyl (C) _PYCFC(Carbamidomethyl (C))SYSG_ REV__ENSG00000119681|ENST00000261978|LTBP2 0.6014990680409731 0.3464572424761564 2 P 1 -1 6.9897 0 0 0.64577 0 0 233.84640355084213 748.4422091119749 982.2886126628171 0 0 0 0 0 0 0 0 0 P 0.64577 + + 1 + NaN NaN 95192.3 NaN 2141 1852 3991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3996 29.397 NaN 21358 35 0 4115.2 0.261 + 22207 QLQLLIKKW 9 19 585.3747155611942 NaN 0 585.7904663085938 PEAK HCD FTMS 0 0 0 3991 2276.765625 0.41353093258940354 -1 0.013223648071289062 5 Unmodified _QLQLLIKKW_ ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1;nc|ENSG00000156384|Q86XK3-3|SFR1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102400.2 NaN 2142 1852 3991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3998 29.402 NaN 127880 35 0 32271 0.327 + -1 EPEMAEWAWGS 11 31 436.8445768383805 1307.5119011153415 3 436.84429931640625 MULTI HCD FTMS 0 0 0 3997 32297.3984375 0.7690632128462356 4 -0.08335685729980469 1 Oxidation (M) _EPEM(Oxidation (M))AEWAWGS_ REV__ENST00000471836.1_1_22:44577677-44581773:+|nuORF;REV__ENST00000475485.6_1_22:44577677-44582522:+|nuORF 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 115616.9 NaN 2143 1853 3997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 3999 29.406 NaN 24770 35 0 5567.5 0.261 + -1 CFRCRRWACV 10 19 452.87886486930023 NaN 0 452.8699645996094 PEAK HCD FTMS 0 0 0 3997 1813.3265380859375 0.9966265131697284 1 -0.016740798950195312 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FRCRRWACV_ REV__ENST00000600059.5_1_19:49006188-49006236:-|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97623.8 NaN 2144 1853 3997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4000 29.41 NaN 55471 35 0 8852.6 0.261 -1 FVDEHEPSM 9 28 553.7266725266846 1105.4387921201692 2 553.7269287109375 MULTI HCD FTMS 0 0 0 3997 24931.892578125 0.2675392248571001 -8 0.12391281127929688 3 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 20.453626601364224 0.18364154288633264 2 PS{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.5499 0 0 756.3068714826187 0 756.3068714826187 0 28.187587626244124 0 0 0 0.5 0 0 0 PS{M(Oxidation (M))|F} 2.5499 + + 5 NaN NaN 88893.7 NaN 2145 1853 3997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4001 29.413 NaN 32389 35 0 9725.2 0.261 + -1 CLPLCPPLT 9 23 556.777418736113 NaN 0 556.7772827148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))LPLC(Carbamidomethyl (C))PPLT_ REV__ENST00000522247.5_1_8:69104572-69104794:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97766.5 NaN 2146 1853 3997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4003 29.419 NaN 360570 35 0 42424 0.327 -1 0 61 492.7072408510268 983.3999287688537 2 492.7071533203125 MULTI HCD FTMS 0 0 0 4002 165765.375 0.5655745465587597 -7 0.10374832153320312 1 NaN NaN 2 {[QG]|[NA]}DSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T 8 -1 45.768 0 0 4.654 0 0 0 162.02311779972175 162.02311779972175 31.075090722850263 0 0 0 0 1.6861818737241734 1.5228787452803376 0 0.7302046884880937 {[QG]|[NA]}DSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T 4.654 - 152 NaN NaN 140287.2 NaN 2147 1854 4002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4004 29.423 NaN 177730 35 0 14123 0.261 + 9247 HPLSDHEATL 10 49 560.275140829622 1118.535728726044 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4002 85372.8125 0.013681935135949435 74 -1.1982269287109375 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 49.93300154707207 0.07803319134556608 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YD]|[{M(Oxidation (M))|F}M]}R{M(Oxidation (M))|F}AT{I|L} 9 4 + 40.908 0 0 3.6573 3.6573 89.512 0 0 0 5.258396522653683 19.454321750294667 5.258396522653683 40.90797194541551 0 0.805462187404089 0 1 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YD]|[{M(Oxidation (M))|F}M]}R{M(Oxidation (M))|F}AT{I|L} 3.6573 - 87 NaN NaN 113442.8 NaN 2148 1854 4002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4005 29.427 NaN 87331 35 0 15911 0.261 + -1 QGGSAMSDTM 10 33 500.6892429017792 999.3639328703584 2 500.6893615722656 MULTI HCD FTMS 0 0 0 4002 41765.03125 0.6322153668834828 -4 0.060211181640625 3 Oxidation (M) _QGGSAMSDTM(Oxidation (M))_ REV__AMER1|p.S339I|1|0.41|ENSG00000184675|chrX:64192271-64192271|C/A|missense_variant;REV__ENSG00000184675|ENST00000374869|AMER1;REV__nc|ENSG00000184675|Q5JTC6-2|AMER1 6.2057823575117 0.44245551207394906 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4613 0 0 834.3179103867632 0 834.3179103867632 0 2.424843744914609 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4613 + + 16 + NaN NaN 116851.2 NaN 2149 1854 4002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4006 29.43 NaN 78694 35 0 18911 0.261 + 4241 EVFRTKIVEK 10 38 416.9153108856563 1247.724103257169 3 416.9151306152344 MULTI HCD FTMS 0 0 0 4002 14892.78515625 0.6269605400221789 -2 0.03684806823730469 4 Unmodified _EVFRTKIVEK_ ENSG00000185989|ENST00000334062|RASA3;nc|ENSG00000185989|Q14644-2|RASA3 5.047519993296601 0.4485863789024576 2 K 1 9 15.485 0 0 1.241 0 0 1101.6187851192767 0 1101.6187851192767 0 13.494850021680094 0 0 0 0 0 0 0 + K 1.241 + + 4 + NaN NaN 99001.3 NaN 2150 1854 4002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4007 29.433 NaN 79715 35 0 7275.6 0.261 + -1 VIAYCFMFML 10 37 442.8681763345247 NaN 0 442.8557434082031 PEAK HCD FTMS 0 0 0 4002 2109.8173828125 0.43786618635791685 -2 0.03684806823730469 5 Carbamidomethyl (C),2 Oxidation (M) _VIAYC(Carbamidomethyl (C))FM(Oxidation (M))FM(Oxidation (M))L_ REV__ENST00000343255.9_1_1:24295819-24295903:-|nuORF 0.776531954647913 0.3395196853010637 2 {I|L}P 2 -1 10.969 0 0 1.2412 0 0 164.3612173157307 506.19321619205317 670.5544335077839 0 0 0 0 0 0 0 0 0 {I|L}P 1.2412 - 4 + NaN NaN 105225.4 NaN 2151 1854 4002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4008 29.437 NaN 13080 35 0 4033.3 0.261 + -1 MGWMFFRW 8 13 588.7577514648438 NaN 0 588.7577514648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _MGWM(Oxidation (M))FFRW_ REV__ENST00000581850.1_1_6:166363005-166401058:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100782.7 NaN 2152 1854 4002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4010 29.442 NaN 3011000 35 0 902250 0.327 + 18809 NADPQAVTM 9 78 481.716065843982 961.417578754764 2 481.7163391113281 MULTI HCD FTMS 0 0 0 4009 2036393.625 0.7071143271572041 -5 0.08363151550292969 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 176.4269993864032 3.292532597148328E-10 2 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 120.66 0 0 12.55 12.55 94.652 0 0 0 13.960828060918828 13.960828060918828 13.960828060918828 9.208187539523749 0 3.1237125054200234 1.2218487496163564 0.9757724967479859 1.8851518780601921 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[{I|L}A]NT{M(Oxidation (M))|F};[QP]DGQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[{I|L}A]GGT{M(Oxidation (M))|F};[QP]DG[AG]AVT{M(Oxidation (M))|F};[QP]DQQVT{M(Oxidation (M))|F};[QP]DG[{I|L}A]NT{M(Oxidation (M))|F};[QP]D[Q{I|L}]NT{M(Oxidation (M))|F};[QP]DG[{I|L}A]GGT{M(Oxidation (M))|F} 12.55;11.592;9.0674;8.1753;8.1097;7.2175;5.6069;4.6927;4.2816;3.7349 +;-;-;-;-;-;-;-;-;- + 502 NaN NaN 536428.6 NaN 2153 1855 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4011 29.447 NaN 49278 35 0 6142.6 0.261 + -1 WYCMEGSYM 9 32 409.4813291898887 1225.4221581698662 3 409.4814758300781 MULTI HCD FTMS 0 0 0 4009 21496.68359375 0.747669794710969 -3 0.060268402099609375 2 Carbamidomethyl (C) _WYC(Carbamidomethyl (C))MEGSYM_ REV__ENSG00000205765|ENST00000381647|RIMOC1 1.0714618166137932 0.3428945748894048 2 M 1 -1 18.979 0 0 1.5488 0 0 1076.371558049552 0 1076.371558049552 0 17.385606273598313 0 0 0 0.5 0 0 0 M 1.5488 + + 2 + NaN NaN 99265.9 NaN 2154 1855 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4012 29.45 NaN 19441 35 0 5978.4 0.261 + -1 LLMMLQTKM 9 20 570.7934751439777 NaN 0 570.7933349609375 PEAK HCD FTMS 0 0 0 4009 5029.8251953125 0.5322609797265003 1 -0.016706466674804688 3 2 Oxidation (M) _LLM(Oxidation (M))MLQTKM(Oxidation (M))_ REV__ENST00000450363.3_1_12:85285781-85285862:-|nuORF 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99315.3 NaN 2155 1855 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4013 29.453 NaN 17533 35 0 4089.4 0.261 + 35299 YWDSWYNN 8 14 574.2282104492188 NaN 0 574.2282104492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YWDSWYNN_ ENSG00000078795|ENST00000508883|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106175.2 NaN 2156 1855 4009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4015 29.459 NaN 295400 35 0 40462 0.326 + 19725 NYARGHYTI 9 54 547.7726205951931 1093.530688257186 2 547.7726440429688 MULTI HCD FTMS 0 0 0 4014 139555.4375 0.9019531728101282 2 -0.04306983947753906 1 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 60.07390631473393 0.0174780869009295 2 [YN]AR{[HG]|PP}YT{I|L} 9 0 + 60.652 0 0 5.5465 5.5465 91.931 0 0 0 22.592503013052934 26.387437564371012 22.592503013052934 37.85280958067104 0 1.5044321917401078 2 0.4247425010840047 0.4247425010840047 + + [YN]AR{[HG]|PP}YT{I|L};{I|L}{M(Oxidation (M))|F}[YV]{[HG]|PP}{I|L}[{M(Oxidation (M))|F}V] 5.5465;2.0849 +;- + 94 NaN NaN 131796.6 NaN 2157 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4016 29.463 NaN 25910 35 0 4931.7 0.261 + 12151 KKKKKKKKKSF 11 16 469.3284273439453 NaN 0 469.32879638671875 PEAK HCD FTMS 0 0 0 4014 7553.22412109375 0.4134535221561224 63 -1.0361366271972656 2 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 A 1 11 3.9794 0 0 0.42486 0 0 565.4676324205094 297.11106287174067 862.5786952922501 0 0 0 0 0 0 0 0 0 A 0.42486 - 1 + NaN NaN 99622.5 NaN 2158 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4017 29.467 NaN 50388 35 0 5171.9 0.261 + 33373 YGHPGYPAL 9 32 487.7396298268639 NaN 0 487.7391662597656 PEAK HCD FTMS 0 0 0 4014 12398.5107421875 0.6437248755604419 5 -0.09905433654785156 3 Unmodified _YGHPGYPAL_ ENSG00000111077|ENST00000314250|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2 5.230669730166228 0.26989974671959066 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103107.7 NaN 2159 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4018 29.47 NaN 26779 35 0 5446.7 0.261 + 30917 VREASSPPLSS 11 21 565.2967379024932 1128.5789228717863 2 565.2962646484375 MULTI HCD FTMS 0 0 0 4014 10852.3642578125 0.931110067311134 1 -0.0264892578125 4 Unmodified _VREASSPPLSS_ ENST00000555567.5_1_14:75421952-75422225:-|nuORF 2.735195868890462 0.4069250265843076 2 {M(Oxidation (M))|F} 1 11 14.604 0 0 1.294 0 0 963.4963708471754 0 963.4963708471754 0 6.645293596321125 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.294 - 4 + NaN NaN 92635.4 NaN 2160 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4019 29.473 NaN 32061 35 0 4848.6 0.261 -1 PMCLRVYR 8 23 527.2691040039062 NaN 0 527.2691040039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _PM(Oxidation (M))CLRVYR_ ENST00000362074.7_1_1:145273244-145273415:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85625.5 NaN 2161 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4020 29.477 NaN 41330 35 0 4426.6 0.261 + 3111 EALNQVTQR 9 34 529.7829715591674 NaN 0 529.7825927734375 PEAK HCD FTMS 0 0 0 4014 13299.0556640625 1 0 0 6 Unmodified _EALNQVTQR_ ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD;PRKCD-SLC4A8|1|fusion;PRKCD-SLC4A8|2|fusion;PRKCD|p.K488Qfs*26|1|0.21|ENSG00000163932|chr3:53188763-53188764|-/T|frameshift_variant 5.296884461304476 0.2695788793730278 2 QVT 3 6 11.682 0 0 1.1047 0 0 427.2065548353285 299.1477144830688 726.3542693183973 0 0 0 0 0 0 0 0 0 + QVT 1.1047 + + 9 + NaN NaN 104666.4 NaN 2162 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4021 29.48 NaN 42483 35 0 10066 0.261 -1 YEYADVSM 8 31 497.19528617534144 NaN 0 497.1953430175781 PEAK HCD FTMS 0 0 0 4014 9380.2099609375 0.7700859964845859 -2 0.040126800537109375 7 Oxidation (M) _YEYADVSM(Oxidation (M))_ ENSG00000206579|ENST00000327381|XKR4;XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant 4.75600775471527 0.38822285293237185 2 S 1 -1 11.99 0 0 1.2082 0 0 165.04894529814538 737.2769869440061 902.3259322421516 0 0 0 0 0 0.5 0 0 0 S 1.2082 + + 2 + NaN NaN 83194.6 NaN 2163 1856 4014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4023 29.485 NaN 98212 35 0 10013 0.327 + 21761 QAEQGQQEL 9 38 515.7438632357741 1029.4731735383482 2 515.7437133789062 MULTI HCD FTMS 0 0 0 4022 38570.71875 0.2616277942131742 10 -0.17627906799316406 1 Unmodified _QAEQGQQEL_ ENSG00000237649|ENST00000428849|KIFC1 35.61225514009592 0.08548698421724198 2 Q{[QG]|[NA]}QE{I|L} 6 3 47.14 0 0 4.579 0 0 328.13804824043126 0 328.13804824043126 0 47.140012553530966 0 0 0 1.9247425010840047 0 0 0.4247425010840047 + Q{[QG]|[NA]}QE{I|L} 4.579 + + 42 NaN NaN 115228.4 NaN 2164 1857 4022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4024 29.49 NaN 57871 35 0 4987.4 0.261 -1 MPSASMTRL 9 33 513.2414717806668 1024.4683906281334 2 513.2410888671875 MULTI HCD FTMS 0 0 0 4022 22215.302734375 0.5206333432813413 23 -0.39682579040527344 2 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 12.240655878213236 0.2545997876781172 2 AS[EP] 4 -1 23.188 0 0 2.2634 0 0 622.3110218732437 0 622.3110218732437 0 20.713337517843655 0 0 0 0.5 0 0.5 0 AS[EP] 2.2634 - 11 NaN NaN 110034.8 NaN 2165 1857 4022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4025 29.493 NaN 80591 35 0 13293 0.261 + -1 WLWPSCRLMT 10 29 436.87918254320357 NaN 0 436.8791809082031 PEAK HCD FTMS 0 0 0 4022 21256.638671875 0.8681589124855628 -138 2.089252471923828 3 Oxidation (M) _WLWPSCRLM(Oxidation (M))T_ REV__ENST00000565544.1_1_16:84219097-84220645:-|nuORF 0.6976657623105312 0.3395871838311286 2 Y 1 -1 5.4846 0 0 0.62915 0 0 290.4873557096509 415.1654451959594 705.6528009056103 0 0 0 0 0 0 0 0 0 Y 0.62915 - 4 + NaN NaN 98069.3 NaN 2166 1857 4022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4026 29.496 NaN 28746 35 0 8394.3 0.261 -1 FHRRKMKA 8 23 545.3082885742188 NaN 0 545.3082885742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _FHRRKM(Oxidation (M))KA_ ENSG00000205442|ENST00000543880|IZUMO3 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88122.5 NaN 2167 1857 4022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4028 29.502 NaN 428360 35 0 110710 0.327 -1 GQRCCCCW 8 67 508.1715753515778 1014.3285977699556 2 508.1716613769531 MULTI HCD FTMS 0 0 0 4027 243452.59375 0.8805094974410861 -3 0.05977630615234375 1 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 9.347437153973935 0.5250182646323369 2 {[QG]|[NA]}D 3 -1 33.442 0 0 3.297 0 0 0 711.1995443854431 711.1995443854431 1.9703550455881924 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0.3252574989159953 {[QG]|[NA]}D 3.297 - 89 NaN NaN 151808.7 NaN 2168 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4029 29.506 NaN 541970 35 0 41594 0.261 -1 0 62 593.7776143464195 1185.5406757596388 2 593.7774047851562 MULTI HCD FTMS 0 0 0 4027 279239.65625 0.3834560644175123 -5 0.09993743896484375 2 NaN NaN 2 SK[C(Carbamidomethyl (C))N]TKSY 8 -1 68.766 0 0 5.8004 0 0 199.08580267024018 0 199.08580267024018 0 24.715080613776337 0 0 0 1.6549471895720984 0 1.8851518780601921 0 SK[C(Carbamidomethyl (C))N]TKSY 5.8004 - 560 + NaN NaN 172695.7 NaN 2169 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4030 29.51 NaN 61058 35 0 13801 0.261 + 33461 YHFFPPTL 8 35 511.2615031337118 1020.5084533342236 2 511.26129150390625 MULTI HCD FTMS 0 0 0 4027 12897.095703125 0.44975363482539615 1 -0.029796600341796875 3 Unmodified _YHFFPPTL_ REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF 5.760428011301431 0.5334459684533844 2 T{I|L} 2 -1 23.711 0 0 2.3235 0 0 788.3657093732437 0 788.3657093732437 0 7.513487579716767 0 0 0 0 0 0.4247425010840047 0 T{I|L} 2.3235 + + 5 NaN NaN 90532.7 NaN 2170 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4031 29.513 NaN 29585 35 0 3936.4 0.261 + 22073 QHIKKKKKVKG 11 24 441.29757465645827 NaN 0 441.2975769042969 PEAK HCD FTMS 0 0 0 4027 22020.884765625 0.5654498856832315 63 -1.033041000366211 4 Unmodified _QHIKKKKKVKG_ REV__ENSG00000103550|ENST00000219837|KNOP1;REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF 0 0.34212014346876374 2 D 1 -1 5.4846 0 0 0.62283 0 0 187.23508964319154 575.2928560846311 762.5279457278227 0 0 0 0 0 0 0 0 0 D 0.62283 - 1 + NaN NaN 98141.1 NaN 2171 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4032 29.516 NaN 40420 35 0 7282.7 0.261 -1 TAFPLCRPWVK 11 28 458.91622918821855 1373.7268581648557 3 458.9158630371094 MULTI HCD FTMS 0 0 0 4027 8132.6787109375 0.4862316184434283 1 -0.029796600341796875 5 Carbamidomethyl (C) _TAFPLC(Carbamidomethyl (C))RPWVK_ ENST00000451399.5_1_6:43153996-43155469:+|nuORF 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90733.5 NaN 2172 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4033 29.52 NaN 182220 35 0 33593 0.261 -1 NVTKEEPLM 9 31 538.7681260636441 1075.5216991940881 2 538.7689819335938 MULTI HCD FTMS 0 0 0 4027 29004.66015625 0.502332657214534 -9 0.16331863403320312 6 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 16.149105407346934 0.22083165093524068 2 {[NV]|[RG]}T 3 -1 15.458 0 0 1.4372 0 0 0 758.3369845025999 758.3369845025999 11.901056208558032 0 0 0 0 0.5 0 0 0 {[NV]|[RG]}T 1.4372 + + 4 + NaN NaN 116137.2 NaN 2173 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4034 29.523 NaN 22816 35 0 2937.4 0.261 + 13954 KYRLAHLFM 9 21 589.8301532129757 NaN 0 589.8300170898438 PEAK HCD FTMS 0 0 0 4027 7048.53564453125 0.8787974975026347 1 -0.029796600341796875 7 Unmodified _KYRLAHLFM_ REV__ENSG00000166133|ENST00000315616|RPUSD2;REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2 1.844237919475145 0.28630992268396543 2 Y 1 -1 6.9897 0 0 0.59353 0 0 128.08918718591377 883.4587496393186 1011.5479368252325 0 0 0 0 0 0 0 0 0 Y 0.59353 + + 1 + NaN NaN 91849 NaN 2174 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4035 29.526 NaN 25730 35 0 4287.5 0.261 -1 NGILVMMAYD 10 20 600.7674387510422 1199.5203245688842 2 601.26953125 MULTI HCD FTMS 0 0 0 4027 7256.95751953125 0.28788503154634015 -6 0.12004470825195312 8 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))NGILVM(Oxidation (M))M(Oxidation (M))AYD_ ENSG00000170920|ENST00000305444|OR7G3;OR7G3|p.R122P|1|0.13|ENSG00000170920|chr19:9126586-9126586|C/G|missense_variant 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87336.4 NaN 2175 1858 4027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4037 29.531 NaN 69838 35 0 13335 0.327 + -1 LYYDMVKITM 10 28 436.87918254320357 NaN 0 436.8787841796875 PEAK HCD FTMS 0 0 0 4036 20826.23828125 0.8505805953853737 -136 2.101686477661133 1 2 Oxidation (M) _LYYDM(Oxidation (M))VKITM(Oxidation (M))_ REV__tr|U7SUD3|U7SUD3_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01385PE=4SV=1 1.9063754702782614 0.33855269584400594 2 T 1 -1 9.732 0 0 1.1164 0 0 605.6506552701978 162.02260767154533 767.6732629417431 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.1164 + + 1 + NaN NaN 100397.2 NaN 2176 1859 4036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4038 29.536 NaN 69739 35 0 11029 0.261 -1 QPMQPTPSM 9 30 524.725235875742 1047.4359188182839 2 524.7254638671875 MULTI HCD FTMS 0 0 0 4036 19547.849609375 0.5571092569931315 18 -0.2900199890136719 2 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 6.2057823575117 0.30397260197431997 2 V 1 -1 5.4846 0 0 0.52362 0 0 277.0312690153526 668.3149508111936 945.3462198265463 0 0 0 0 0 0 0 0 0 V 0.52362 - 1 + NaN NaN 100035.2 NaN 2177 1859 4036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4040 29.541 NaN 444550 35 0 63045 0.327 -1 0 64 492.7072408510268 983.3999287688537 2 492.7070007324219 MULTI HCD FTMS 0 0 0 4039 265969.125 0.9074595178305788 -1 0.009862899780273438 1 NaN NaN 2 NACVAC(Carbamidomethyl (C))VT 8 -1 69.875 0 0 7.1055 0 0 0 162.0223330133422 162.0223330133422 49.91434719156942 0 0 0 0 3.079689690656103 1.5228787452803376 0.3494850021680094 0 NACVAC(Carbamidomethyl (C))VT 7.1055 - 221 + NaN NaN 154139.4 NaN 2178 1860 4039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4041 29.546 NaN 218620 35 0 19659 0.261 + 9248 HPLSDHEATL 10 50 560.275140829622 1118.535728726044 2 560.275146484375 MULTI HCD FTMS 0 0 0 4039 101108.265625 0.016203715111173078 80 -1.2842769622802734 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 65.23502041540118 0.023231415588018726 2 EAT{I|L} 4 6 42.083 0 0 3.7624 0 0 686.3124867169937 0 686.3124867169937 0 2.609309280316907 0 0 0 0.4247425010840047 0 1.305462187404089 0 + EAT{I|L} 3.7624 + + 142 NaN NaN 144049.1 NaN 2179 1860 4039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4042 29.549 NaN 134990 35 0 32178 0.261 + 7346 FVDEHEPSM 9 37 553.7266725266846 1105.4387921201692 2 553.7266845703125 MULTI HCD FTMS 0 0 0 4039 79188.6171875 0.8497574419375538 -1 0.009862899780273438 3 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 61.357469665136826 0.01568246967499496 2 [{M(Oxidation (M))|F}V]D{[YC]|[HE]}EPS{M(Oxidation (M))|F} 9 0 + 53.835 0 0 4.87 4.87 89.601 0 0 0 5.6424927368725974 53.83471251333795 5.6424927368725974 20.216525140920602 0 1.8494850021680094 0 0.4247425010840047 0 + + [{M(Oxidation (M))|F}V]D{[YC]|[HE]}EPS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{[YC]|[HE]}EC{NN|[MP]|[D{I|L}]|[EV]} 4.87;3.0412 +;- + 32 NaN NaN 101921.3 NaN 2180 1860 4039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4043 29.552 NaN 31811 35 0 4422.6 0.261 + 22980 RAATPAWFSY 10 17 585.2898792645311 NaN 0 585.2905883789062 PEAK HCD FTMS 0 0 0 4039 10276.8388671875 0.5400623945379376 4 -0.072662353515625 4 Unmodified _RAATPAWFSY_ SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|17|2|sense 1.4819007175156935 0.33891598740166873 2 E 1 10 6.9897 0 0 0.59814 0 0 148.12822348672393 888.3729531284434 1036.5011766151674 0 0 0 0 0 0 0 0 0 E 0.59814 - 1 + NaN NaN 85678.3 NaN 2181 1860 4039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4045 29.558 NaN 118720 35 0 18867 0.327 + -1 QGGSAMSDTM 10 37 500.6892429017792 999.3639328703584 2 500.6890563964844 MULTI HCD FTMS 0 0 0 4044 58993.16796875 0.8930051340733094 3 -0.05633735656738281 1 Oxidation (M) _QGGSAMSDTM(Oxidation (M))_ REV__AMER1|p.S339I|1|0.41|ENSG00000184675|chrX:64192271-64192271|C/A|missense_variant;REV__ENSG00000184675|ENST00000374869|AMER1;REV__nc|ENSG00000184675|Q5JTC6-2|AMER1 2.9952420565917617 0.4594494122822477 2 {[QG]|[NA]}D 3 -1 16.695 0 0 1.6705 0 0 0 696.2346048276428 696.2346048276428 12.090606190045111 0 0 0 0 0.9247425010840047 0 0 0 {[QG]|[NA]}D 1.6705 - 8 NaN NaN 106646.3 NaN 2182 1861 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4046 29.562 NaN 70956 35 0 5850.3 0.261 -1 0 28 510.0300618358069 2036.0911414768277 4 510.0302734375 MULTI HCD FTMS 0 0 0 4044 12749.7216796875 0.4592634036537143 4 -0.06399154663085938 2 NaN NaN 2 EN 2 -1 20.969 0 0 1.0299 0 0 1774.9923065119808 0 1774.9923065119808 0 20.969100130080562 0 0 0 0 0 0 0 EN 1.0299 - 3 NaN NaN 91840.2 NaN 2183 1861 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4047 29.566 NaN 23983 35 0 4521.1 0.261 + -1 SSFMECFRC 9 22 620.2332971137413 1238.4520412942825 2 620.2325439453125 MULTI HCD FTMS 0 0 0 4044 11448.3701171875 0.8425686391450299 -2 0.026187896728515625 3 2 Carbamidomethyl (C),Oxidation (M) _SSFM(Oxidation (M))EC(Carbamidomethyl (C))FRC(Carbamidomethyl (C))_ REV__ENST00000358350.8_2_4:48578092-48578179:-|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90144.9 NaN 2184 1861 4044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4049 29.571 NaN 3709200 35 0 1154800 0.327 + 18810 NADPQAVTM 9 77 481.716065843982 961.417578754764 2 481.7164306640625 MULTI HCD FTMS 0 0 0 4048 2688750.5 0.9336377689264748 2 -0.04315185546875 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 176.4269993864032 3.292532597148328E-10 2 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 116.79 0 0 12.148 12.148 94.644 0 0 0 8.080371765640422 8.080371765640422 8.080371765640422 9.208187539523749 0 3.1989700043360187 1.2218487496163564 0.9119543704721594 1.8851518780601921 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]NAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[{I|L}A]NT{M(Oxidation (M))|F};{[QG]|[NA]}[EP]GGAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[{I|L}A]GGT{M(Oxidation (M))|F};[QP]ADNAVT{M(Oxidation (M))|F};[QP][DG]QAVT{M(Oxidation (M))|F};[QP]ADGGAVT{M(Oxidation (M))|F};[QP][DG][AG]AVT{M(Oxidation (M))|F} 12.148;11.19;9.484;8.7662;8.5263;7.8085;7.6373;7.1418;6.6795;6.184 +;-;-;-;-;-;-;-;-;- + 637 NaN NaN 660024.5 NaN 2185 1862 4048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4050 29.575 NaN 123450 35 0 11951 0.261 -1 MLDILMDYCH 10 42 442.8558283404721 1325.5456556216163 3 442.85589599609375 MULTI HCD FTMS 0 0 0 4048 36587.64453125 0.5457726039597026 -13 0.23248863220214844 2 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 5.783430956126388 0.4446910851847804 2 DPE 3 -1 31.198 0 0 2.3536 0 0 966.396870826282 0 966.396870826282 0 10.228787452803374 0 0 0 0.5 0 0 0 DPE 2.3536 - 13 NaN NaN 104659.7 NaN 2186 1862 4048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4051 29.579 NaN 17597 35 0 3490 0.261 + 4361 EWHCRRRV 8 20 571.2951049804688 NaN 0 571.2951049804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EWHCRRRV_ ENSG00000179846|ENST00000686631|NKPD1;nc|ENSG00000179846|Q17RQ9|NKPD1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109668.7 NaN 2187 1862 4048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4053 29.584 NaN 75224 35 0 10387 0.327 + 19726 NYARGHYTI 9 37 547.7726205951931 1093.530688257186 2 547.7725219726562 MULTI HCD FTMS 0 0 0 4052 46346.3515625 0.2995385890282528 9 -0.1504669189453125 1 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 13.042465956692817 0.2476723265019929 2 YT{I|L} 3 6 30.445 0 0 2.7841 0 0 698.325237205928 0 698.325237205928 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 + YT{I|L} 2.7841 + + 6 NaN NaN 110990.1 NaN 2188 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4054 29.589 NaN 75496 35 0 22951 0.261 + -1 VPYGPMGAAL 10 34 496.25077352019656 990.4869941071931 2 496.2504577636719 MULTI HCD FTMS 0 0 0 4052 14921.2060546875 0.7430715441709211 -2 0.02646636962890625 2 Oxidation (M) _VPYGPM(Oxidation (M))GAAL_ REV__ENSG00000134644|ENST00000426105|PUM1;REV__ENST00000490546.1_1_1:31439047-31452930:-|nuORF;REV__nc|ENSG00000134644|Q14671-2|PUM1;REV__nc|ENSG00000134644|Q14671-4|PUM1;REV__nc|ENSG00000134644|Q14671|PUM1;REV__PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant 4.3292370932331545 0.45238836448149167 2 A{I|L} 2 -1 15.573 0 0 1.5723 0 0 788.3546620099625 0 788.3546620099625 0 8.58349385648225 0 0 0 0 0 0 0 A{I|L} 1.5723 + + 2 NaN NaN 100497.8 NaN 2189 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4055 29.592 NaN 12426 35 0 5480.2 0.261 + -1 GCHCTMHAHC 10 10 607.20979488603 NaN 0 607.210205078125 PEAK HCD FTMS 0 0 0 4052 8769.5947265625 0.6193443425476345 43 -0.6913833618164062 3 2 Carbamidomethyl (C) _GC(Carbamidomethyl (C))HC(Carbamidomethyl (C))TMHAHC_ REV__chr1:206866636-206867384|357|13.51|0.63|4.42|+|0|IL20,IL20|1;REV__ENSG00000162891|ENST00000367098|IL20 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83686.8 NaN 2190 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4056 29.595 NaN 29020 35 0 3359.7 0.261 + 12364 KNVRCCFVL 9 15 541.2854938497487 1080.5564347662973 2 541.787109375 MULTI HCD FTMS 0 0 0 4052 2775.369384765625 0.31707423811230273 1 -0.029870986938476562 4 Unmodified _KNVRCCFVL_ REV__ENST00000382911.8_2_18:51884960-51885041:+|nuORF 1.844237919475145 0.33703635659052655 2 V{I|L} 2 -1 20.969 0 0 1.9406 0 0 850.3936856971022 0 850.3936856971022 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.9406 + + 1 NaN NaN 83575.7 NaN 2191 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4057 29.599 NaN 29505 35 0 4785.7 0.261 + 12152 KKKKKKKKKSF 11 24 469.3284273439453 NaN 0 469.32818603515625 PEAK HCD FTMS 0 0 0 4052 8944.0869140625 0.4895875162452002 70 -1.1224517822265625 5 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 {I|L} 1 11 2.7642 0 0 0.29512 0 0 495.39307797714997 325.1414888971313 820.5345668742813 0 0 0 0 0 0 0 0 0 {I|L} 0.29512 - 2 + NaN NaN 89488.1 NaN 2192 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4058 29.602 NaN 39970 35 0 6508.4 0.261 + 4127 ETGYVVER 8 28 476.7406296146963 951.4667062961926 2 476.7408447265625 MULTI HCD FTMS 0 0 0 4052 7616.28955078125 0.2523250613367778 5 -0.10029983520507812 6 Unmodified _ETGYVVER_ ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1 1.844237919475145 0.5392561982033289 2 K 1 8 6.9897 0 0 0.73462 0 0 231.21592612216756 589.1336153619749 820.3495414841425 0 0 0 0 0 0 0 0 0 K 0.73462 - 5 + NaN NaN 92717.2 NaN 2193 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4059 29.605 NaN 81210 35 0 13122 0.261 + 17815 MGDKIWLPFP 10 43 401.8779562273219 NaN 0 401.8780822753906 PEAK HCD FTMS 0 0 0 4052 4662.818359375 0.6710951650686657 5 -0.10029983520507812 7 Unmodified _MGDKIWLPFP_ ENSG00000117500|ENST00000370282|TMED5;nc|ENSG00000117500|Q9Y3A6-2|TMED5 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97460.7 NaN 2194 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4060 29.609 NaN 25212 35 0 6373.5 0.261 -1 0 15 630.8055783545819 2519.1932075519276 4 631.055908203125 MULTI HCD FTMS 0 0 0 4052 7732.70849609375 0.687935417091651 -4 0.052654266357421875 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84204.7 NaN 2195 1863 4052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4063 29.621 NaN 304340 35 0 65117 0.327 -1 GQRCCCCW 8 69 508.1715753515778 1014.3285977699556 2 508.17156982421875 MULTI HCD FTMS 0 0 0 4062 176951.25 0.6399901262463834 4 -0.072906494140625 1 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 5.230669730166228 0.5342319408533849 2 {[QG]|[NA]}D 3 -1 31.043 0 0 3.0605 0 0 0 711.1997885260681 711.1997885260681 4.8708934260475445 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 {[QG]|[NA]}D 3.0605 - 60 NaN NaN 156441.6 NaN 2196 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4064 29.626 NaN 181380 35 0 40195 0.262 + 1909 DAAHPTNVQRL 11 50 407.88278456718706 1220.6265243017613 3 407.8826904296875 MULTI HCD FTMS 0 0 0 4062 67556.5703125 0.4085297326900095 -5 0.08031654357910156 2 Unmodified _DAAHPTNVQRL_ ENSG00000168036|ENST00000349496|CTNNB1 19.143941131932106 0.2902806250200643 2 {[DA]|[EG]}{M(Oxidation (M))|F} 3 9 27.676 0 0 2.2674 0 0 0 884.4785195012331 884.4785195012331 7.983324797206279 0 0 0 0 0.5 2 0 0 {[DA]|[EG]}{M(Oxidation (M))|F} 2.2674 - 28 NaN NaN 110388.8 NaN 2197 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4065 29.629 NaN 67337 35 0 18248 0.261 + 11803 KEIQRNLYNK 10 19 435.9138252193193 1304.7196462581578 3 435.91375732421875 MULTI HCD FTMS 0 0 0 4062 25290.654296875 0.6557870169433396 -2 0.037525177001953125 3 Unmodified _KEIQRNLYNK_ REV__ENSG00000141519|ENST00000397545|CCDC40;REV__ENST00000574799.5_1_17:78022329-78073571:+|nuORF;REV__nc|ENSG00000141519|Q4G0X9-2|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-4|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-5|CCDC40 1.5922808571145555 0.4668755089467872 2 KE 2 -1 20.969 0 0 1.6072 0 0 0 1044.5595834647381 1044.5595834647381 20.969100130080562 0 0 0 0 0 0 0 0 KE 1.6072 + + 1 + NaN NaN 97575.2 NaN 2198 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4066 29.633 NaN 39165 35 0 4482.1 0.261 -1 MPSASMTRL 9 30 513.2414717806668 1024.4683906281334 2 513.2406616210938 MULTI HCD FTMS 0 0 0 4062 18628.822265625 0.4365813121483486 31 -0.5095252990722656 4 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 8.155526934196011 0.2891920862272901 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 4 -1 19.693 0 0 1.9222 0 0 0 619.2909639947874 619.2909639947874 19.69273760456403 0 0 0 0 0.5 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA 1.9222 + + 4 + NaN NaN 104000 NaN 2199 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4067 29.636 NaN 76606 35 0 16767 0.261 + 1923 DADEEKASL 9 33 489.2247879579127 976.4350229826255 2 489.22418212890625 MULTI HCD FTMS 0 0 0 4062 21079.3125 0.36623214905487433 -3 0.05080604553222656 5 Unmodified _DADEEKASL_ ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1 17.44264345198275 0.2096557692338702 2 WDE 3 7 29.693 0 0 3.0409 0 0 0 543.2796114557249 543.2796114557249 4.476212463643421 0 0 0 0 0.3494850021680094 0 0 0 WDE 3.0409 - 16 + NaN NaN 96081.4 NaN 2200 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4068 29.639 NaN 59741 35 0 5007.3 0.261 + 21745 QAEGSSHIL 9 26 471.23799250848424 940.4614320837685 2 471.23773193359375 MULTI HCD FTMS 0 0 0 4062 25743.880859375 0.32070392070034404 -6 0.090179443359375 6 Unmodified _QAEGSSHIL_ ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 89695.1 NaN 2201 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4069 29.643 NaN 56601 35 0 7841.2 0.261 + 12534 KSEEQVTK 8 29 474.75377777157155 947.4930026099431 2 474.7535095214844 MULTI HCD FTMS 0 0 0 4062 20135.521484375 0.8177614547151748 -3 0.05080604553222656 7 Unmodified _KSEEQVTK_ REV__ENSG00000134249|ENST00000369400|ADAM30;REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 7.289230182591677 0.5311777711368266 2 TK 2 -1 17.959 0 0 1.8954 0 0 700.3404127435354 0 700.3404127435354 0 15.969100130080562 0 0 0 0 0 0 0 TK 1.8954 + + 8 + NaN NaN 105283.7 NaN 2202 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4070 29.646 NaN 36182 35 0 5880.1 0.261 + -1 CEQIKYTQ 8 21 527.7468369485402 NaN 0 527.7715454101562 PEAK HCD FTMS 0 0 0 4062 1983.1136474609375 0.9051987421680818 -1 0.0076541900634765625 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CEQIKYTQ_ REV__ENST00000463247.1_1_7:135291633-135292003:+|nuORF 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94585 NaN 2203 1865 4062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4072 29.651 NaN 904910 35 0 60617 0.327 -1 0 81 593.7776143464195 1185.5406757596388 2 593.7775268554688 MULTI HCD FTMS 0 0 0 4071 524560.5 0.7203343091741915 3 -0.043292999267578125 1 NaN NaN 2 C(Carbamidomethyl (C))ETVTKSY 8 -1 76.199 0 0 6.4274 0 0 199.0861391767897 0 199.0861391767897 0 21.737423382189647 0 0 0 2.227347323042898 0 1.3851518780601921 0 C(Carbamidomethyl (C))ETVTKSY 6.4274 - 1756 + NaN NaN 230499.9 NaN 2204 1866 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4073 29.656 NaN 41846 35 0 7800.5 0.261 + 34796 YQWYALDQ 8 29 543.748242005665 1085.48193107813 2 544.247802734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YQWYALDQ_ ENSG00000050730|ENST00000057513|TNIP3;ENST00000511909.5_1_4:122053805-122071269:-|nuORF 0.6903765706972694 0.5409681170271811 2 C 1 8 1.9897 0 0 0.1833 0 0 601.5377304939487 377.9231356256469 979.4608661195957 0 0 0 0 0 0 0 0 0 C 0.1833 - 1 + NaN NaN 88870.5 NaN 2205 1866 4071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4075 29.661 NaN 201890 35 0 27391 0.327 -1 0 39 492.7072408510268 983.3999287688537 2 492.70709228515625 MULTI HCD FTMS 0 0 0 4074 118277.53125 0.4035508688398182 6 -0.08647727966308594 1 NaN NaN 2 {[QG]|[NA]}C{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[VA]|[{I|L}G]}T 8 -1 37.202 0 0 3.783 0 0 0 162.02320276431877 162.02320276431877 17.737731077138932 0 0 0 0 2.305462187404089 1.5228787452803376 0 0.3054621874040891 {[QG]|[NA]}C{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[VA]|[{I|L}G]}T 3.783 - 20 + NaN NaN 117603 NaN 2206 1867 4074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4076 29.666 NaN 199010 35 0 36188 0.261 -1 NVTKEEPLM 9 27 538.7681260636441 1075.5216991940881 2 538.7682495117188 MULTI HCD FTMS 0 0 0 4074 57739.9453125 1 0 0 2 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 16.149105407346934 0.22083165093524068 2 {[NV]|[RG]}T 3 -1 14.705 0 0 1.3672 0 0 0 758.3394259088499 758.3394259088499 8.138181262758266 0 0 0 0 0.4247425010840047 0 0 0 {[NV]|[RG]}T 1.3672 + + 4 + NaN NaN 128475.6 NaN 2207 1867 4074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4077 29.669 NaN 25634 35 0 5729.9 0.261 -1 MMHRKYYN 8 17 600.7674387510422 1199.5203245688842 2 600.767578125 MULTI HCD FTMS 0 0 0 4074 20615.337890625 0.47096862253680855 4 -0.06309890747070312 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))MHRKYYN_ ENST00000339950.4_1_1:62910443-62910506:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93715.5 NaN 2208 1867 4074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4078 29.673 NaN 21594 35 0 5753.4 0.261 + 24884 RYQKSTELL 9 18 569.3168845726107 1136.6192162120212 2 569.3161010742188 MULTI HCD FTMS 0 0 0 4074 9904.599609375 0.09755760243485252 -8 0.12990188598632812 4 Unmodified _RYQKSTELL_ ENSG00000132475|ENST00000254810|H3-3B;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000168148|ENST00000366696|H3-4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000188375|ENST00000340398|H3-5;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000273983|ENST00000614378|H3C8;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000275714|ENST00000613854|H3C1;ENSG00000277775|ENST00000618052|H3C7;ENSG00000278828|ENST00000685041|H3C10;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;nc|ENSG00000273213|Q5TEC6|H3-7 4.3292370932331545 0.3181982124262546 2 G 1 9 6.9897 0 0 0.61496 0 0 892.4400607938557 184.14051233463127 1076.580573128487 0 0 0 0 0 0 0 0 0 G 0.61496 - 3 + NaN NaN 87266 NaN 2209 1867 4074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4079 29.676 NaN 20843 35 0 3899.9 0.261 -1 CDRHGCGQYS 10 21 620.2332971137413 1238.4520412942825 2 620.2342529296875 MULTI HCD FTMS 0 0 0 4074 11557.5888671875 0.8506068395713478 4 -0.06309890747070312 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))DRHGC(Carbamidomethyl (C))GQYS_ ENSG00000145826|ENST00000274507|LECT2 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88422.9 NaN 2210 1867 4074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4080 29.679 NaN 27841 35 0 4524.9 0.261 -1 PRLCWGHLM 9 21 585.2892076024767 NaN 0 585.2791748046875 PEAK HCD FTMS 0 0 0 4074 4661.8681640625 1 0 0 6 Carbamidomethyl (C) _PRLC(Carbamidomethyl (C))WGHLM_ ENST00000526145.6_2_11:128356016-128359255:-|nuORF 2.0597508629832335 0.2852655770354268 2 Y 1 -1 3.9794 0 0 0.34054 0 0 244.12936627741584 758.3410738580686 1002.4704401354845 0 0 0 0 0 0 0 0 0 Y 0.34054 - 1 + NaN NaN 106618.3 NaN 2211 1867 4074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4082 29.685 NaN 192770 35 0 15156 0.327 + 9249 HPLSDHEATL 10 48 560.275140829622 1118.535728726044 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4081 71221.6875 0.011414061222919892 88 -1.4648933410644531 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 47.748688679222035 0.08597705450879027 2 EAT{I|L} 4 6 44.469 0 0 3.9756 0 0 686.3126698224625 0 686.3126698224625 0 21.588709367037282 0 0 0 0.4247425010840047 0 1.305462187404089 0 + EAT{I|L} 3.9756 + + 115 NaN NaN 111698.3 NaN 2212 1868 4081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4083 29.689 NaN 75093 35 0 15719 0.261 -1 FVDEHEPSM 9 39 553.7266725266846 1105.4387921201692 2 553.7265625 MULTI HCD FTMS 0 0 0 4081 35817.296875 0.3843483527127721 7 -0.10032463073730469 2 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 25.399314129420986 0.14091189997036632 2 C{NN|[MP]|[D{I|L}]|[EV]} 3 -1 19.705 0 0 1.7826 0 0 756.3077870099625 0 756.3077870099625 0 9.51544993495972 0 0 0 0.9247425010840047 0 0 0 C{NN|[MP]|[D{I|L}]|[EV]} 1.7826 - 8 NaN NaN 100631.7 NaN 2213 1868 4081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4085 29.695 NaN 1372800 35 0 446170 0.327 + 18811 NADPQAVTM 9 54 481.716065843982 961.417578754764 2 481.7161865234375 MULTI HCD FTMS 0 0 0 4084 789250.4375 0.27405816106468195 9 -0.1471080780029297 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 148.26817274609934 1.0657023776783114E-05 2 {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F} 9 0 + 108.71 0 0 11.308 11.308 96.157 0 0 0 11.84955642535897 11.84955642535897 11.84955642535897 12.460762528683702 0 2.8494850021680094 1.2218487496163564 1.916386562212267 0.3252574989159953 + + {[QG]|[NA]}DPQAVT{M(Oxidation (M))|F};{[QG]|[NA]}DP[AG]AVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V[QA]PD{[QG]|[NA]} 11.308;10.012;0.59149 +;-;- + 233 + NaN NaN 294357.9 NaN 2214 1869 4084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4086 29.699 NaN 138260 35 0 19433 0.261 + -1 PFDELFVPSEM 11 41 442.8688545319118 NaN 0 442.8558654785156 PEAK HCD FTMS 0 0 0 4084 1934.3310546875 0.3934641904292349 3 -0.040035247802734375 2 Oxidation (M) _PFDELFVPSEM(Oxidation (M))_ REV__ENSG00000081248|ENST00000362061|CACNA1S 2.843284757254958 0.33405456343542356 2 D 1 -1 5.4846 0 0 0.62062 0 0 524.5756779585518 241.09795557193596 765.6736335304877 0 0 0 0 0 0 0 0 0 D 0.62062 + + 4 + NaN NaN 105364.1 NaN 2215 1869 4084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4087 29.703 NaN 25252 35 0 4495 0.261 -1 WGVGGFGTMLE 11 18 585.2665873900222 1168.5186218468443 2 585.26806640625 MULTI HCD FTMS 0 0 0 4084 9912.0703125 0.6193869363274432 -2 0.033184051513671875 3 Oxidation (M) _WGVGGFGTM(Oxidation (M))LE_ ENSG00000183798|ENST00000332312|EMILIN3;nc|ENSG00000183798|Q9NT22-2|EMILIN3 1.3295316138638542 0.4130897924953357 2 P 1 -1 1.9897 0 0 0.17028 0 0 615.7481883525069 452.70847498111567 1068.4566633336226 0 0 0 0 0 0 0 0 0 P 0.17028 - 1 + NaN NaN 104241.6 NaN 2216 1869 4084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4089 29.708 NaN 33769 35 0 5721.9 0.327 -1 FCCRIMAL 8 20 543.748242005665 1085.48193107813 2 543.7487182617188 MULTI HCD FTMS 0 0 0 4088 15834.9013671875 0.6702713470342851 -8 0.13689422607421875 1 2 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))C(Carbamidomethyl (C))RIM(Oxidation (M))AL_ ABCG8|p.A550V|1|0.29|ENSG00000143921|chr2:43875306-43875306|C/T|missense_variant;ENSG00000143921|ENST00000272286|ABCG8;nc|ENSG00000143921|Q9H221-2|ABCG8 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106719.1 NaN 2217 1870 4088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4090 29.712 NaN 28596 35 0 5360.4 0.261 + 19727 NYARGHYTI 9 19 547.7726205951931 1093.530688257186 2 547.7727661132812 MULTI HCD FTMS 0 0 0 4088 18496.048828125 0.11954080918544215 16 -0.2747230529785156 2 Unmodified _NYARGHYTI_ ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000198033|ENST00000400113|TUBA3C;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C 6.2057823575117 0.30397260197431997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102026.2 NaN 2218 1870 4088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4091 29.716 NaN 36229 35 0 5996.2 0.261 + 2114 DFHWEPLPE 9 27 585.2665873900222 1168.5186218468443 2 585.2661743164062 MULTI HCD FTMS 0 0 0 4088 10829.6689453125 0.6767259773186323 -1 0.013181686401367188 3 Unmodified _DFHWEPLPE_ ENSG00000131386|ENST00000339732|GALNT15 1.844237919475145 0.33703635659052655 2 Y[EP] 3 7 10.458 0 0 0.89494 0 0 761.3641834943375 0 761.3641834943375 0 10.45757490560675 0 0 0 0 0 0 0 Y[EP] 0.89494 - 1 NaN NaN 94050.8 NaN 2219 1870 4088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4092 29.719 NaN 16809 35 0 3296.6 0.261 + 14491 LFALMNKRW 9 17 589.830131892523 NaN 0 589.8302001953125 PEAK HCD FTMS 0 0 0 4088 4301.2021484375 0.5156220897391997 -1 0.013181686401367188 4 Unmodified _LFALMNKRW_ REV__ENSG00000263956|ENST00000682118|NBPF11 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101233.4 NaN 2220 1870 4088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4094 29.725 NaN 150020 35 0 35096 0.327 -1 LPDDPRQM 8 35 494.23185483259994 986.4491567319999 2 494.2316589355469 MULTI HCD FTMS 0 0 0 4093 72359.0625 0.8447635016811432 10 -0.16741561889648438 1 Oxidation (M) _LPDDPRQM(Oxidation (M))_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 24.020572477871973 0.4170589785259073 2 {I|L}PDD 4 -1 56.542 0 0 5.7319 0 0 0 543.2354535352707 543.2354535352707 43.35425410781532 0 0 0 0 1.305462187404089 1.154901959985743 0 0 {I|L}PDD 5.7319 + + 34 + NaN NaN 104843.4 NaN 2221 1871 4093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4095 29.729 NaN 21979 35 0 4541.6 0.261 -1 HPPDAVDEPQM 11 17 626.2692523703604 1250.5239518075207 2 626.7704467773438 MULTI HCD FTMS 0 0 0 4093 3643.3896484375 0.5274858223810737 -5 0.07320785522460938 2 Oxidation (M) _HPPDAVDEPQM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 2.498486711656943 0.4079631525365919 2 M 1 -1 5.4846 0 0 0.43858 0 0 778.5442897975582 337.9182222955688 1116.462512093127 0 0 0 0 0 0 0 0 0 M 0.43858 + + 2 + NaN NaN 102438.3 NaN 2222 1871 4093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4097 29.735 NaN 118930 35 0 13150 0.327 + 3159 EASVLHNLK 9 46 505.7853157118717 1009.5560784905434 2 505.78497314453125 MULTI HCD FTMS 0 0 0 4096 20233.986328125 0.8824385311409255 -2 0.026853561401367188 1 Unmodified _EASVLHNLK_ ENSG00000100345|ENST00000216181|MYH9;ENSG00000133026|ENST00000360416|MYH10;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580|MYH10 6.2057823575117 0.30397260197431997 2 {I|L} 1 8 5.4846 0 0 0.54326 0 0 386.18231247667467 507.2678316705688 893.4501441472435 0 0 0 0 0 0 0 0 0 + {I|L} 0.54326 + + 12 + NaN NaN 112606.8 NaN 2223 1872 4096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4098 29.739 NaN 26738 35 0 4775.4 0.261 -1 0 23 455.6858315715243 909.3571102098487 2 455.6857604980469 MULTI HCD FTMS 0 0 0 4096 8691.3017578125 0.5056924609666069 -25 0.4198627471923828 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92569.3 NaN 2224 1872 4096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4099 29.743 NaN 60370 35 0 8356.7 0.261 -1 0 19 524.725235875742 1047.4359188182839 2 524.7251586914062 MULTI HCD FTMS 0 0 0 4096 10546.76171875 0.3005803043419403 31 -0.49717140197753906 3 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.66732 0 0 163.94832223800887 767.3827608697874 931.3310831077963 0 0 0 0 0 0 0 0 0 {I|L} 0.66732 - 1 + NaN NaN 90520 NaN 2225 1872 4096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4101 29.748 NaN 276380 35 0 63220 0.327 + 1910 DAAHPTNVQRL 11 59 407.88278456718706 1220.6265243017613 3 407.8827209472656 MULTI HCD FTMS 0 0 0 4100 132330.15625 0.8002301346792439 3 -0.04714775085449219 1 Unmodified _DAAHPTNVQRL_ ENSG00000168036|ENST00000349496|CTNNB1 60.94344597037026 0.036480086864956726 2 {[DA]|[EG]}[HA][TP]NVQ[R{I|L}] 11 0 + 58.046 0 0 4.7554 4.7554 91.362 0 0 0 44.84569493890543 7.367585652254185 7.367585652254185 58.04554487703232 0 1.6307196863200843 1.6989700043360187 0 0.4247425010840047 + + {[DA]|[EG]}[HA][TP]NVQ[R{I|L}] 4.7554 + + 70 + NaN NaN 140093 NaN 2226 1873 4100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4102 29.753 NaN 101920 35 0 17195 0.261 + -1 CTMDCLPC 8 33 508.1715753515778 1014.3285977699556 2 508.1716613769531 MULTI HCD FTMS 0 0 0 4100 44492.3515625 0.1609181381509475 12 -0.2178325653076172 2 2 Carbamidomethyl (C),Oxidation (M) _CTM(Oxidation (M))DC(Carbamidomethyl (C))LPC(Carbamidomethyl (C))_ REV__ENSG00000172273|ENST00000350777|HINFP;REV__ENST00000527755.5_1_11:119003111-119005205:+|nuORF;REV__HINFP|p.Y255C|1|0.38|ENSG00000172273|chr11:119132670-119132670|A/G|missense_variant;REV__nc|ENSG00000172273|Q9BQA5-2|HINFP 2.577480529830294 0.5381683276125971 2 P 1 -1 5.4846 0 0 0.54071 0 0 88.01914229414122 826.2154635065061 914.2346058006474 0 0 0 0 0 0 0 0 0 P 0.54071 + + 3 + NaN NaN 102934 NaN 2227 1873 4100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4103 29.756 NaN 15133 35 0 5687.1 0.261 -1 VTSCCRFLCY 10 8 626.2692523703604 1250.5239518075207 2 626.2688598632812 MULTI HCD FTMS 0 0 0 4100 6082.62158203125 0.44699965530973357 -9 0.13385391235351562 3 Carbamidomethyl (C) _VTSCC(Carbamidomethyl (C))RFLCY_ ENSG00000196218|ENST00000359596|RYR1;nc|ENSG00000196218|P21817-2|RYR1;nc|ENSG00000196218|P21817-3|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88080.3 NaN 2228 1873 4100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4104 29.759 NaN 16835 35 0 5065.6 0.262 + 22452 QQPDEQRR 8 9 528.764395970363 NaN 0 528.7647705078125 PEAK HCD FTMS 0 0 0 4100 3740.20849609375 0.71358010085211 -1 0.013257980346679688 4 Unmodified _QQPDEQRR_ ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92773.5 NaN 2229 1873 4100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4105 29.763 NaN 13475 35 0 4304.6 0.261 -1 PVWCCEMLQN 10 11 648.2655029296875 NaN 0 648.2655029296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _PVWCC(Carbamidomethyl (C))EM(Oxidation (M))LQN_ ENST00000547249.1_1_12:96588298-96591843:+|nuORF 0.45834013312273997 0.33979201340002624 2 E 1 -1 5.4846 0 0 0.42368 0 0 680.2839164044937 482.1820162408813 1162.465932645375 0 0 0 0 0 0 0 0 0 E 0.42368 + + 1 + NaN NaN 85597.9 NaN 2230 1873 4100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4107 29.768 NaN 119600 35 0 13914 0.327 + 21746 QAEGSSHIL 9 42 471.23799250848424 940.4614320837685 2 471.2376708984375 MULTI HCD FTMS 0 0 0 4106 70128.46875 0.8736241052267895 3 -0.05351829528808594 1 Unmodified _QAEGSSHIL_ ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 14.838274106304384 0.23215694253501695 2 [QA]EG 4 5 13.188 0 0 1.4022 0 0 0 552.2783907525999 552.2783907525999 2.730012720637374 0 0 0 0 0 0 0 0 + [QA]EG 1.4022 + + 26 + NaN NaN 109981.8 NaN 2231 1874 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4108 29.773 NaN 97975 35 0 15244 0.261 + 1924 DADEEKASL 9 44 489.2247879579127 976.4350229826255 2 489.2245178222656 MULTI HCD FTMS 0 0 0 4106 37969.25390625 0.6596781302092333 6 -0.11394691467285156 2 Unmodified _DADEEKASL_ ENSG00000130779|ENST00000620786|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;nc|ENSG00000130779|P30622-2|CLIP1 57.24910588100465 0.021429789259086996 2 {[DA]|[EG]}DEE[KA]S{I|L} 9 0 + 74.389 0 0 7.6185 7.6185 96.543 0 0 0 8.156753288559813 8.156753288559813 8.156753288559813 74.38933438737884 0 2.25 1.6989700043360187 0.3807196863200844 0 + + {[DA]|[EG]}DEE[KA]S{I|L} 7.6185 + + 33 NaN NaN 98124.6 NaN 2232 1874 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4109 29.776 NaN 34708 35 0 4127.8 0.261 + -1 MYSIQPDDDEM 11 29 459.1721293789616 NaN 0 459.172119140625 PEAK HCD FTMS 0 0 0 4106 12049.890625 0.4915282000293186 148 -2.7191085815429688 3 2 Oxidation (M) _M(Oxidation (M))YSIQPDDDEM(Oxidation (M))_ REV__ENSG00000065150|ENST00000651721|IPO5;REV__nc|ENSG00000065150|O00410-2|IPO5;REV__nc|ENSG00000065150|O00410-3|IPO5 0.09484139111097674 0.34185110575506755 2 H 1 -1 1.5938 0 0 0.17393 0 0 654.835456412417 121.4159182184203 776.2513746308373 0 0 0 0 0 0 0 0 0 H 0.17393 - 2 + NaN NaN 91858.5 NaN 2233 1874 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4110 29.78 NaN 49197 35 0 7273.5 0.261 -1 PMTMEKTR 8 31 513.2414717806668 1024.4683906281334 2 513.2396850585938 MULTI HCD FTMS 0 0 0 4106 10376.7578125 0.2431875980687438 40 -0.6562519073486328 4 2 Oxidation (M) _PM(Oxidation (M))TM(Oxidation (M))EKTR_ ENST00000373691.4_2_X:70837173-70837287:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 118581.2 NaN 2234 1874 4106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4112 29.785 NaN 222120 35 0 42169 0.327 -1 0 41 593.7776143464195 1185.5406757596388 2 593.7774658203125 MULTI HCD FTMS 0 0 0 4111 86213.421875 0.11838955790203656 12 -0.2078571319580078 1 NaN NaN 2 TVHKSY 6 -1 62.912 0 0 5.3066 0 0 452.15461928535314 0 452.15461928535314 0 26.001159735598875 0 0 0 1.4247425010840047 0 1.805462187404089 0 TVHKSY 5.3066 - 255 NaN NaN 139448.2 NaN 2235 1875 4111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4113 29.789 NaN 40866 35 0 9905 0.263 + 34831 YRKSENTA 8 26 484.74319732952347 NaN 0 484.742919921875 PEAK HCD FTMS 0 0 0 4111 12280.5361328125 0.4815621734207109 6 -0.10713768005371094 2 Unmodified _YRKSENTA_ IFIT5|p.H389Y|1|0.3|ENSG00000152778|chr10:89418364-89418364|C/T|missense_variant 2.577480529830294 0.38822285293237185 2 A 1 7 6.9897 0 0 0.72247 0 0 174.0619428994782 719.3479097955686 893.4098526950468 0 0 0 0 0 0 0 0 0 + A 0.72247 + + 1 + NaN NaN 93139.3 NaN 2236 1875 4111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4115 29.795 NaN 107990 35 0 11208 0.327 + 9511 HQAKPTTELL 10 43 569.3168845726107 1136.6192162120212 2 569.3167114257812 MULTI HCD FTMS 0 0 0 4114 79361.9609375 0.7816936513276662 1 -0.026493072509765625 1 Unmodified _HQAKPTTELL_ REV__nc|ENSG00000149930|Q9UL54-2|TAOK2 23.789781309258295 0.28859042913526417 2 {M(Oxidation (M))|F}KSTE{I|L}{I|L} 7 -1 50.566 0 0 4.4488 0 0 300.14277846504064 0 300.14277846504064 0 50.5655637381809 0 0 0 0.3807196863200844 0 0.3807196863200844 0 {M(Oxidation (M))|F}KSTE{I|L}{I|L} 4.4488 - 89 NaN NaN 110384.4 NaN 2237 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4116 29.799 NaN 93941 35 0 10682 0.261 + 26321 SSAEVIAQAR 10 31 516.2778063300294 1030.5410597268587 2 516.277587890625 MULTI HCD FTMS 0 0 0 4114 31782.66015625 0.6211780558890388 -2 0.027025222778320312 2 Unmodified _SSAEVIAQAR_ ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2 45.739877483867886 0.09559676962230333 2 V{I|L}AQAR 6 4 51.713 0 0 5.0181 0 0 374.1457710916612 0 374.1457710916612 0 47.733871898888154 0 0 0 2.329689690656103 0 0 0 + V{I|L}AQAR 5.0181 + + 58 + NaN NaN 99006.3 NaN 2238 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4117 29.803 NaN 30397 35 0 5382.9 0.261 -1 ICGPRGWM 8 23 496.7256059591476 NaN 0 496.7255859375 PEAK HCD FTMS 0 0 0 4114 4737.89990234375 0.5130186312022278 1 -0.026493072509765625 3 Carbamidomethyl (C),Oxidation (M) _IC(Carbamidomethyl (C))GPRGWM(Oxidation (M))_ ENST00000529022.5_1_8:145747045-145747186:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89743 NaN 2239 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4118 29.806 NaN 38326 35 0 6109.3 0.261 + 3213 EDFFLEPE 8 31 513.2271342275511 NaN 0 513.241455078125 PEAK HCD FTMS 0 0 0 4114 3999.726806640625 0.9483319990715159 -4 0.060405731201171875 4 Unmodified _EDFFLEPE_ EIF2B5|p.H656P|1|0.25|ENSG00000145191|chr3:184144196-184144196|A/C|missense_variant 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109423.8 NaN 2240 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4119 29.81 NaN 20849 35 0 4701 0.261 -1 GRYRCYYY 8 21 600.7674387510422 1199.5203245688842 2 600.7666625976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _GRYRC(Carbamidomethyl (C))YYY_ ENSG00000187116|ENST00000432233|LILRA5;ENST00000489504.5_1_19:54822600-54824295:-|nuORF;nc|ENSG00000187116|A6NI73-2|LILRA5;nc|ENSG00000187116|A6NI73-3|LILRA5;nc|ENSG00000187116|A6NI73-4|LILRA5 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85270.4 NaN 2241 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4120 29.813 NaN 22794 35 0 6135.4 0.261 + 492 AMCHFFFEP 9 18 564.7347626344957 NaN 0 564.7341918945312 PEAK HCD FTMS 0 0 0 4114 5255.751953125 1 0 0 6 Unmodified _AMCHFFFEP_ REV__ENSG00000068654|ENST00000263857|POLR1A 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92666.4 NaN 2242 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4121 29.816 NaN 30824 35 0 8172.7 0.261 -1 ARRRQDKFWYC 11 17 529.2645545181705 NaN 0 529.2645874023438 PEAK HCD FTMS 0 0 0 4114 1843.5498046875 0.4088530631953409 -1 0.010248184204101562 7 Carbamidomethyl (C) _ARRRQDKFWYC(Carbamidomethyl (C))_ ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000155849|Q92556-2|ELMO1;nc|ENSG00000155849|Q92556-3|ELMO1 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96320.3 NaN 2243 1876 4114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4123 29.822 NaN 147510 35 0 11398 0.327 + 9250 HPLSDHEATL 10 54 560.275140829622 1118.535728726044 2 560.275146484375 MULTI HCD FTMS 0 0 0 4122 67122.375 0.010757101166379799 97 -1.691690444946289 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 34.40172386719151 0.19398797222092762 2 EV{M(Oxidation (M))|F}{I|L}C{I|L} 6 9 35.328 0 0 3.1584 0 0 396.2107105939469 0 396.2107105939469 0 15.406075122407682 0 0 0 0.5 0 0.5 0 EV{M(Oxidation (M))|F}{I|L}C{I|L} 3.1584 - 156 NaN NaN 105163.6 NaN 2244 1877 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4124 29.826 NaN 46348 35 0 6907.7 0.263 + 22164 QKRWQYDVW 9 31 436.8875017102647 NaN 0 436.87939453125 PEAK HCD FTMS 0 0 0 4122 1918.996337890625 1 0 0 2 Unmodified _QKRWQYDVW_ ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3 0.235843874597859 0.29410397576755687 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86138.8 NaN 2245 1877 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4125 29.83 NaN 62624 35 0 15692 0.261 + 30593 VPALSEGQR 9 27 478.7618212682365 955.509089603273 2 478.7616882324219 MULTI HCD FTMS 0 0 0 4122 24318.611328125 0.1574039093917089 -9 0.13706588745117188 3 Unmodified _VPALSEGQR_ ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6 9.38312468134398 0.279288223203164 2 VPA 3 6 26.198 0 0 2.7418 0 0 0 685.3290499322874 685.3290499322874 19.20818753952375 0 0 0 0 0 0 0 0 + VPA 2.7418 + + 4 + NaN NaN 101741.3 NaN 2246 1877 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4126 29.833 NaN 32077 35 0 4614.2 0.261 -1 YFDSIDMS 8 24 497.19528617534144 NaN 0 497.1954345703125 PEAK HCD FTMS 0 0 0 4122 6218.984375 0.5105592304956568 19 -0.30968475341796875 4 Oxidation (M) _YFDSIDM(Oxidation (M))S_ tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1 4.75600775471527 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100800 NaN 2247 1877 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4127 29.836 NaN 36306 35 0 9737.4 0.261 + -1 WRWCCRWCC 9 24 510.5317906537813 NaN 0 510.5316467285156 PEAK HCD FTMS 0 0 0 4122 1985.7099609375 0.37761028459675466 3 -0.060428619384765625 5 4 Carbamidomethyl (C) _WRWC(Carbamidomethyl (C))C(Carbamidomethyl (C))RWC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000481698.1_1_22:19020011-19020715:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85743.4 NaN 2248 1877 4122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4129 29.842 NaN 339020 35 0 110750 0.327 + 18812 NADPQAVTM 9 31 481.716065843982 961.417578754764 2 481.71588134765625 MULTI HCD FTMS 0 0 0 4128 172903.125 0.060038626813984926 18 -0.28951072692871094 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 59.368380827593164 0.01846506874148156 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 67.171 0 0 6.9866 6.9866 95.248 0 0 0 8.89506772603255 59.72357194224834 8.89506772603255 67.17084689121528 0 2.4247425010840047 0 0 0.7059771852360797 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 6.9866 + + 80 NaN NaN 136072.7 NaN 2249 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4130 29.846 NaN 149300 35 0 17174 0.261 -1 MLDILMDYCH 10 41 442.8558283404721 1325.5456556216163 3 442.8558654785156 MULTI HCD FTMS 0 0 0 4128 57853.51171875 0.8629924703676084 3 -0.05022239685058594 2 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 5.783430956126388 0.4446910851847804 2 DPE 3 -1 34.693 0 0 2.6172 0 0 966.3959673887446 0 966.3959673887446 0 19.20818753952375 0 0 0 0.8494850021680094 0 0 0 DPE 2.6172 - 16 NaN NaN 112357 NaN 2250 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4131 29.85 NaN 34595 35 0 6557.9 0.261 -1 FCCRIMAL 8 20 543.748242005665 1085.48193107813 2 543.7484130859375 MULTI HCD FTMS 0 0 0 4128 23624.61328125 1 0 0 3 2 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))C(Carbamidomethyl (C))RIM(Oxidation (M))AL_ ABCG8|p.A550V|1|0.29|ENSG00000143921|chr2:43875306-43875306|C/T|missense_variant;ENSG00000143921|ENST00000272286|ABCG8;nc|ENSG00000143921|Q9H221-2|ABCG8 4.75600775471527 0.5349361699807423 2 {M(Oxidation (M))|F}A{I|L} 3 -1 26.198 0 0 2.4135 0 0 736.3117542951187 0 736.3117542951187 0 26.197887582883936 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A{I|L} 2.4135 + + 3 NaN NaN 98744.4 NaN 2251 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4132 29.853 NaN 36243 35 0 5759.6 0.261 -1 FVDEHEPSM 9 21 553.7266725266846 1105.4387921201692 2 553.7268676757812 MULTI HCD FTMS 0 0 0 4128 11715.3134765625 0.1257147196770565 17 -0.2693939208984375 4 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4008 0 0 940.3923881668474 0 940.3923881668474 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4008 + + 3 + NaN NaN 89061.2 NaN 2252 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4133 29.857 NaN 20440 35 0 3233.4 0.261 + 8700 HGISSQRFY 9 17 547.7726205951931 1093.530688257186 2 547.7722778320312 MULTI HCD FTMS 0 0 0 4128 6164.458984375 0.03984118024505446 24 -0.3701972961425781 5 Unmodified _HGISSQRFY_ ENSG00000179886|ENST00000504548|TIGD5;nc|ENSG00000179886|Q53EQ6-2|TIGD5 0.5247636613948944 0.34703895399870666 2 {M(Oxidation (M))|F} 1 8 3.4949 0 0 0.31959 0 0 763.4755867940986 179.99965845279533 943.4752452468939 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.31959 + + 1 + NaN NaN 84614.6 NaN 2253 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4134 29.86 NaN 27758 35 0 5604.2 0.261 + 33135 YEELNAFFH 9 19 585.2665873900222 1168.5186218468443 2 585.2799072265625 MULTI HCD FTMS 0 0 0 4128 5313.8447265625 0.3320523262586862 7 -0.12401771545410156 6 Unmodified _YEELNAFFH_ ENSG00000171532|ENST00000302584|NEUROD2 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96726.8 NaN 2254 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4135 29.863 NaN 9980.2 35 0 4253.3 0.261 + -1 AMNALLMFEE 10 8 600.7674387510422 1199.5203245688842 2 600.7692260742188 MULTI HCD FTMS 0 0 0 4128 7644.2255859375 0.1746364970426621 14 -0.21609115600585938 7 2 Oxidation (M) _AM(Oxidation (M))NALLM(Oxidation (M))FEE_ REV__DIS3L2|p.P613Afs*8|1|0.2|ENSG00000144535|chr2:232329902-232329903|-/C|frameshift_variant;REV__ENSG00000144535|ENST00000325385|DIS3L2;REV__ENST00000429283.2_1_2:233194466-233199371:+|nuORF;REV__ENST00000433430.5_1_2:233125383-233196385:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95302.5 NaN 2255 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4136 29.866 NaN 82481 35 0 15435 0.264 + 9266 HPLWFYLDI 9 50 401.8779205924064 NaN 0 401.8778076171875 PEAK HCD FTMS 0 0 0 4128 1511.580322265625 0.3060241870216266 -10 0.1572399139404297 8 Unmodified _HPLWFYLDI_ ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-3|N4BP2L2 0.6014990680409731 0.29233206172879045 2 H 1 8 3.9794 0 0 0.49634 0 0 514.7203359584472 146.93616663150627 661.6565025899534 0 0 0 0 0 0 0 0 0 + H 0.49634 + + 1 + NaN NaN 106798.5 NaN 2256 1878 4128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4138 29.872 NaN 30184 35 0 5820.2 0.327 -1 QGFMVHCF 8 19 492.7072408510268 983.3999287688537 2 492.7071838378906 MULTI HCD FTMS 0 0 0 4137 9458.48046875 0.03227137031631706 18 -0.2728729248046875 1 Oxidation (M) _QGFM(Oxidation (M))VHCF_ ENST00000418448.1_1_13:57889915-57890026:+|nuORF 5.760428011301431 0.5334459684533844 2 {[QG]|[NA]}D 3 -1 32.447 0 0 3.2995 0 0 0 680.2678927057249 680.2678927057249 32.447274948966935 0 0 0 0 0.5 1.6989700043360187 0 0 {[QG]|[NA]}D 3.2995 - 2 + NaN NaN 87096 NaN 2257 1879 4137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4139 29.877 NaN 19934 35 0 5290.7 0.261 -1 HPPDAVDEPQM 11 14 626.2692523703604 1250.5239518075207 2 626.2691040039062 MULTI HCD FTMS 0 0 0 4137 11197.666015625 0.8228940074201344 -3 0.0767822265625 2 Oxidation (M) _HPPDAVDEPQM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 2.498486711656943 0.4079631525365919 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107415.7 NaN 2258 1879 4137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4141 29.882 NaN 52748 35 0 10218 0.327 -1 LPTENVDKM 9 30 531.7605471958286 1061.5065414584571 2 531.7603149414062 MULTI HCD FTMS 0 0 0 4140 24830.802734375 0.254371223809012 -7 0.13406944274902344 1 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 13.614867670302875 0.2427269026982664 2 {I|L}P 2 -1 19.464 0 0 1.8336 0 0 0 848.3416278291065 848.3416278291065 -1.5051499783199063 0 -1.5051499783199063 0 0 0 0 0 0 {I|L}P 1.8336 + + 2 + NaN NaN 99859.7 NaN 2259 1880 4140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4142 29.886 NaN 17522 35 0 4592.3 0.261 + -1 ICFSKVRYM 9 10 631.3051147460938 NaN 0 631.3051147460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))IC(Carbamidomethyl (C))FSKVRYM(Oxidation (M))_ REV__ENST00000493267.1_1_12:6765863-6772267:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90766.1 NaN 2260 1880 4140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4144 29.892 NaN 66193 35 0 11520 0.326 + 1911 DAAHPTNVQRL 11 35 407.88278456718706 1220.6265243017613 3 407.8825988769531 MULTI HCD FTMS 0 0 0 4143 23488.732421875 0.1420416331549654 11 -0.16586875915527344 1 Unmodified _DAAHPTNVQRL_ ENSG00000168036|ENST00000349496|CTNNB1 5.868138319507137 0.39318500527288264 2 {[DA]|[EG]}{M(Oxidation (M))|F} 3 9 30.942 0 0 2.5349 0 0 0 884.4769020695925 884.4769020695925 17.754537344402905 0 0 0 0 0.5 1.6989700043360187 0 0 {[DA]|[EG]}{M(Oxidation (M))|F} 2.5349 - 13 NaN NaN 95827.8 NaN 2261 1881 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4145 29.896 NaN 40962 35 0 5006.2 0.261 + 21747 QAEGSSHIL 9 19 471.23799250848424 940.4614320837685 2 471.2377014160156 MULTI HCD FTMS 0 0 0 4143 17011.501953125 0.21192047163246536 10 -0.1556415557861328 2 Unmodified _QAEGSSHIL_ ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 2.0597508629832335 0.3354026079994024 2 {I|L} 1 8 6.9897 0 0 0.74322 0 0 149.1066024634071 675.2477297162917 824.3543321796988 0 0 0 0 0 0 0 0 0 + {I|L} 0.74322 + + 2 + NaN NaN 95114.5 NaN 2262 1881 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4146 29.9 NaN 57883 35 0 10867 0.261 -1 IPMEIPKMD 9 38 553.2671411611951 1104.5197293891902 2 553.266845703125 MULTI HCD FTMS 0 0 0 4143 10211.732421875 0.5338530746083281 -50 0.8376350402832031 3 2 Oxidation (M) _IPM(Oxidation (M))EIPKM(Oxidation (M))D_ tr|U7STK0|U7STK0_FUSNUUrocanatehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutUPE=3SV=1 1.6526216038709556 0.33848895094777925 2 G 1 -1 3.0989 0 0 0.28057 0 0 188.1748940393839 856.2784517877561 1044.45334582714 0 0 0 0 0 0 0 0 0 G 0.28057 - 2 + NaN NaN 94027.4 NaN 2263 1881 4143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4148 29.905 NaN 37772 35 0 4252.3 0.327 -1 FPPMPTCRV 9 26 552.7715476456934 NaN 0 552.7605590820312 PEAK HCD FTMS 0 0 0 4147 6241.4697265625 0.4296710554356883 7 -0.11753654479980469 1 Carbamidomethyl (C) _FPPMPTC(Carbamidomethyl (C))RV_ ENSG00000185909|ENST00000332780|KLHDC8B 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88315.3 NaN 2264 1882 4147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4149 29.91 NaN 34133 35 0 5921 0.262 + -1 MYSIQPDDDEM 11 25 459.1721293789616 NaN 0 459.17230224609375 PEAK HCD FTMS 0 0 0 4147 12559.1123046875 0.5122999085387229 156 -2.8666152954101562 2 2 Oxidation (M) _M(Oxidation (M))YSIQPDDDEM(Oxidation (M))_ REV__ENSG00000065150|ENST00000651721|IPO5;REV__nc|ENSG00000065150|O00410-2|IPO5;REV__nc|ENSG00000065150|O00410-3|IPO5 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90390.5 NaN 2265 1882 4147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4150 29.913 NaN 37744 35 0 5588.4 0.261 -1 LPDDPRQM 8 21 494.23185483259994 986.4491567319999 2 494.23187255859375 MULTI HCD FTMS 0 0 0 4147 12175.6044921875 0.14214537793251494 21 -0.32660675048828125 3 Oxidation (M) _LPDDPRQM(Oxidation (M))_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 4.3292370932331545 0.5355693454741696 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102540.1 NaN 2266 1882 4147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4151 29.917 NaN 15766 35 0 4687.2 0.261 -1 HPPDAVDEPQM 11 6 626.2692523703604 1250.5239518075207 2 626.2689208984375 MULTI HCD FTMS 0 0 0 4147 13607.6650390625 1 0 0 4 Oxidation (M) _HPPDAVDEPQM(Oxidation (M))_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 2.498486711656943 0.4079631525365919 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98487.3 NaN 2267 1882 4147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4153 29.922 NaN 51741 35 0 5214.2 0.327 + 19437 NPPRFVRIH 9 28 568.3272441851352 1134.6399354370703 2 569.3167724609375 MULTI HCD FTMS 0 0 0 4152 1861.565185546875 0.20658490045848205 -2 0.03008270263671875 1 Unmodified _NPPRFVRIH_ REV__ENSG00000104723|ENST00000503731|TUSC3;REV__nc|ENSG00000104723|Q13454-2|TUSC3 2.0597508629832335 0.3354026079994024 2 K 1 -1 6.9897 0 0 0.61603 0 0 559.3221386614829 444.19858728580317 1003.5207259472861 0 0 0 0 0 0 0 0 0 K 0.61603 - 5 + NaN NaN 93037.8 NaN 2268 1883 4152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4154 29.93 NaN 76394 35 0 14138 0.27 + 2616 DVAEVDTVRR 10 28 580.3070227306462 1158.5994925280922 2 580.30712890625 MULTI HCD FTMS 0 0 0 4152 31146.68359375 0.4729379893202762 -3 0.040050506591796875 2 Unmodified _DVAEVDTVRR_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 10.799506525563784 0.4100970765206026 2 N 1 10 5.4846 0 0 0.47338 0 0 744.4257692388329 297.11049555467986 1041.5362647935128 0 0 0 0 0 0 0 0 0 N 0.47338 - 5 + NaN NaN 94152.5 NaN 2269 1883 4152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4155 29.934 NaN 37314 35 0 5811.3 0.263 + -1 GWAQGCKC 8 24 455.18874096240154 NaN 0 455.18890380859375 PEAK HCD FTMS 0 0 0 4152 8552.9921875 0.8565999289350597 14 -0.22268295288085938 3 Carbamidomethyl (C) _GWAQGC(Carbamidomethyl (C))KC_ REV__ENSG00000115267|ENST00000649979|IFIH1 0.7936320650641473 0.38822285293237185 2 E 1 -1 3.9794 0 0 0.43808 0 0 541.2359891496094 235.05842004947502 776.2944091990844 0 0 0 0 0 0 0 0 0 E 0.43808 - 1 + NaN NaN 92687.9 NaN 2270 1883 4152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4156 29.937 NaN 24936 35 0 5807.4 0.261 + 2586 DTRETETVF 9 16 549.2592396394155 1096.5039263456308 2 549.259765625 MULTI HCD FTMS 0 0 0 4152 11139.0771484375 0.5741424141513154 -4 0.050189971923828125 4 Unmodified _DTRETETVF_ ENSG00000176986|ENST00000345254|SEC24C;VCL-SEC24C|1|fusion 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88095.8 NaN 2271 1883 4152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4157 29.94 NaN 30497 35 0 3586.3 0.261 -1 0 22 524.725235875742 1047.4359188182839 2 524.7249145507812 MULTI HCD FTMS 0 0 0 4152 11622.177734375 0.33122941559436275 42 -0.6635990142822266 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 96566 NaN 2272 1883 4152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4158 29.944 NaN 14223 35 0 4084.1 0.261 -1 HSEEDYRCW 9 14 641.25 NaN 0 641.25 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _HSEEDYRC(Carbamidomethyl (C))W_ tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100970 NaN 2273 1883 4152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4160 29.949 NaN 59070 35 0 10416 0.327 + 26322 SSAEVIAQAR 10 26 516.2778063300294 1030.5410597268587 2 516.2778930664062 MULTI HCD FTMS 0 0 0 4159 15956.888671875 0.31187034170530087 6 -0.0821075439453125 1 Unmodified _SSAEVIAQAR_ ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2 26.268140514670165 0.2654086933305545 2 V{I|L}AQ{[QV]|[N{I|L}]|[RA]|[KV]} 6 4 32.184 0 0 3.1231 0 0 374.14452759970874 0 374.14452759970874 0 32.18433447093204 0 0 0 1.305462187404089 0 0 0 + V{I|L}AQ{[QV]|[N{I|L}]|[RA]|[KV]} 3.1231 + + 26 + NaN NaN 101140.8 NaN 2274 1884 4159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4161 29.954 NaN 23218 35 0 5157.6 0.261 + 23469 RLRVVHMF 8 18 529.3092270595783 1056.6039011859566 2 529.3091430664062 MULTI HCD FTMS 0 0 0 4159 4559.7666015625 0.5863287679765007 1 -0.016801834106445312 2 Unmodified _RLRVVHMF_ ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102458.4 NaN 2275 1884 4159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4162 29.957 NaN 30610 35 0 5662.6 0.261 -1 MPSASMTRL 9 22 513.2414717806668 1024.4683906281334 2 513.2415161132812 MULTI HCD FTMS 0 0 0 4159 13387.2900390625 0.3137418226459382 50 -0.7678031921386719 3 2 Oxidation (M) _M(Oxidation (M))PSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 1.4819007175156935 0.3397831423917744 2 S[EP] 3 -1 10.458 0 0 1.0208 0 0 693.347948142775 0 693.347948142775 0 3.4678748622465623 0 0 0 0 0 0 0 S[EP] 1.0208 - 2 NaN NaN 99437.8 NaN 2276 1884 4159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4163 29.96 NaN 15587 35 0 2134 0.261 + -1 FMQSYCGWW 9 16 640.7463921248423 1279.4782313164844 2 640.7463989257812 MULTI HCD FTMS 0 0 0 4159 5310.74755859375 0.41095650403641065 -7 0.12738990783691406 4 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))QSYC(Carbamidomethyl (C))GWW_ REV__ENSG00000176253|ENST00000641904|OR4K13 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111331.5 NaN 2277 1884 4159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4165 29.966 NaN 248510 35 0 81665 0.327 + 30601 VPATDRNAL 9 41 478.7618212682365 955.509089603273 2 478.761474609375 MULTI HCD FTMS 0 0 0 4164 151071.21875 0.9778190089464062 -1 0.016801834106445312 1 Unmodified _VPATDRNAL_ ENSG00000104408|ENST00000220849|EIF3E 34.93206674587334 0.08860942999206235 2 VPAT 4 5 64.909 0 0 6.7932 0 0 0 584.2784517877561 584.2784517877561 46.32576888900239 0 0 0 0 1.3494850021680094 1.5228787452803376 0.4247425010840047 0 + VPAT 6.7932 + + 20 + NaN NaN 122452.2 NaN 2278 1885 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4166 29.97 NaN 126260 35 0 11441 0.261 + 9251 HPLSDHEATL 10 32 560.275140829622 1118.535728726044 2 560.275146484375 MULTI HCD FTMS 0 0 0 4164 56893.6796875 0.009117839887608937 105 -1.8763141632080078 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 36.12702656103203 0.1790159924230938 2 E[MD]{I|L}C{I|L} 6 8 27.625 0 0 2.4697 0 0 396.21141249824376 0 396.21141249824376 0 11.170912423450403 0 0 0 0.5 0 0.5 0 E[MD]{I|L}C{I|L} 2.4697 - 52 NaN NaN 103313.5 NaN 2279 1885 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4167 29.974 NaN 54968 35 0 5570.7 0.261 + 12715 KYAELKDRL 9 24 568.3272441851352 1134.6399354370703 2 568.3270874023438 MULTI HCD FTMS 0 0 0 4164 31439.345703125 0.8391473124830119 -1 0.016801834106445312 3 Unmodified _KYAELKDRL_ ENSG00000196878|ENST00000356082|LAMB3 12.872603262515298 0.2491399024913319 2 KYAE{I|L}KD[R{I|L}] 9 0 + 54.614 0 0 4.8134 4.8134 91.347 0 0 0 54.614262661931434 7.147642715192504 7.147642715192504 54.614262661931434 0 0 0 0 0 + + KYAE{I|L}KD[R{I|L}] 4.8134 + + 29 + NaN NaN 95755.9 NaN 2280 1885 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4168 29.977 NaN 28665 35 0 10754 0.261 + 9587 HRYNWYIRWSW 11 13 556.2717366618164 NaN 0 556.2720336914062 PEAK HCD FTMS 0 0 0 4164 1654.865966796875 0.16157787945229252 -1 0.016801834106445312 4 Unmodified _HRYNWYIRWSW_ REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96561 NaN 2281 1885 4164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4170 29.983 NaN 165130 35 0 47873 0.327 -1 NADPQAVTM 9 26 481.716065843982 961.417578754764 2 481.7159118652344 MULTI HCD FTMS 0 0 0 4169 74571.5546875 0.025894116967645788 26 -0.4014701843261719 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 30.7034409873982 0.10802119112323902 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 -1 + 62.369 0 0 6.4872 6.4872 94.276 0 0 0 7.147642715192504 62.36880000633434 7.147642715192504 62.36880000633434 0 2.3494850021680094 0 0 0 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 6.4872 + + 48 NaN NaN 117036.5 NaN 2282 1886 4169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4171 29.987 NaN 32509 35 0 11291 0.261 + -1 EMNKHDPSL 9 17 543.748242005665 1085.48193107813 2 543.7483520507812 MULTI HCD FTMS 0 0 0 4169 7816.31640625 0.3308547874708928 8 -0.10866546630859375 2 Oxidation (M) _EM(Oxidation (M))NKHDPSL_ REV__nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;REV__nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90882.6 NaN 2283 1886 4169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4173 29.993 NaN 100640 35 0 14206 0.327 -1 MLDILMDYCH 10 32 442.8558283404721 1325.5456556216163 3 442.8558654785156 MULTI HCD FTMS 0 0 0 4172 36194.12890625 0.5399025882725315 12 -0.1823558807373047 1 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 3.3196427980023873 0.4577323075863651 2 DPE 3 -1 31.198 0 0 2.3536 0 0 966.3949836776303 0 966.3949836776303 0 26.760912590556813 0 0 0 0.5 0 0 0 DPE 2.3536 - 10 NaN NaN 106435.9 NaN 2284 1887 4172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4174 29.997 NaN 61355 35 0 10007 0.261 + 26326 SSAPVVVTR 9 22 458.26668730474904 914.5188216762981 2 458.2665100097656 MULTI HCD FTMS 0 0 0 4172 24221.703125 0.22551460887368896 -7 0.110687255859375 2 Unmodified _SSAPVVVTR_ ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 8.745405648335112 0.2847203663274469 2 {[CA]|SS}A 3 6 13.952 0 0 1.5257 0 0 0 666.3935183215481 666.3935183215481 13.952424927286843 0 0 0 0 0.3494850021680094 0 0 0 + {[CA]|SS}A 1.5257 + + 3 + NaN NaN 99585.1 NaN 2285 1887 4172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4175 30.001 NaN 32142 35 0 10833 0.261 -1 ISVDWCFV 8 17 513.2414717806668 1024.4683906281334 2 513.2400512695312 MULTI HCD FTMS 0 0 0 4172 5728.404296875 0.13424972490401393 53 -0.8330039978027344 3 Carbamidomethyl (C) _ISVDWC(Carbamidomethyl (C))FV_ ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91308.2 NaN 2286 1887 4172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4177 30.006 NaN 139590 35 0 25428 0.327 + 16118 LPTENVDKM 9 39 531.7605471958286 1061.5065414584571 2 531.760498046875 MULTI HCD FTMS 0 0 0 4176 80826.3671875 0.8279998901951908 1 -0.016815185546875 1 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 46.0223103267499 0.037698999139422325 2 {I|L}PTENVDK{M(Oxidation (M))|F} 9 0 + 96.597 0 0 9.1 9.1 93.486 0 0 0 89.60708479613345 14.973024840566467 14.973024840566467 9.208187539523749 0 1.805462187404089 1.3979400086720375 0.5 0 + + {I|L}PTENVDK{M(Oxidation (M))|F};{I|L}PTEGGVDK{M(Oxidation (M))|F};{I|L}[QT][DP]VDK{M(Oxidation (M))|F} 9.1;8.2325;4.2713 +;-;- + 171 + NaN NaN 110233 NaN 2287 1888 4176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4178 30.011 NaN 33888 35 0 6319.1 0.261 -1 QGFMVHCF 8 29 492.7072408510268 983.3999287688537 2 492.7083740234375 MULTI HCD FTMS 0 0 0 4176 4937.44921875 0.01684607296940892 27 -0.4317760467529297 2 Oxidation (M) _QGFM(Oxidation (M))VHCF_ ENST00000418448.1_1_13:57889915-57890026:+|nuORF 0.7936320650641473 0.540814922690045 2 {[QG]|[NA]}D 3 -1 10.458 0 0 1.0634 0 0 0 680.2756441705686 680.2756441705686 6.962724883926656 0 0 0 0 0 0 0 0 {[QG]|[NA]}D 1.0634 - 3 + NaN NaN 89586 NaN 2288 1888 4176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4179 30.014 NaN 13728 35 0 2412.2 0.261 + 33657 YKEALALTRGG 11 16 589.830083395983 NaN 0 589.83056640625 PEAK HCD FTMS 0 0 0 4176 4254.87890625 0.66583776894476 -1 0.013271331787109375 3 Unmodified _YKEALALTRGG_ REV__ENSG00000188452|ENST00000410087|CERKL;REV__ENST00000421817.5_1_2:182412449-182414421:-|nuORF;REV__nc|ENSG00000188452|Q49MI3-3|CERKL;REV__nc|ENSG00000188452|Q49MI3-4|CERKL;REV__nc|ENSG00000188452|Q49MI3-5|CERKL;REV__nc|ENSG00000188452|Q49MI3-9|CERKL;REV__nc|ENSG00000188452|Q49MI3|CERKL 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93395.7 NaN 2289 1888 4176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4180 30.017 NaN 80384 35 0 12517 0.264 + 33649 YIYPRLYCL 9 42 401.8779205924064 NaN 0 401.8778381347656 PEAK HCD FTMS 0 0 0 4176 4939.41455078125 1 0 0 4 Unmodified _YIYPRLYCL_ ENSG00000136827|ENST00000351698|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;nc|ENSG00000136827|O14656-2|TOR1A 0.6014990680409731 0.29233206172879045 2 H 1 9 2.7642 0 0 0.34478 0 0 514.7198781947753 146.93380151920158 661.6536797139769 0 0 0 0 0 0 0 0 0 H 0.34478 - 1 + NaN NaN 98607.4 NaN 2290 1888 4176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4182 30.023 NaN 37405 35 0 4994.2 0.411 + 35154 YVHKQFPM 8 32 525.2665538546678 1048.5185547761355 2 525.2662353515625 MULTI HCD FTMS 0 0 0 4181 8117.931640625 0.62986439835241 -3 0.04023170471191406 1 Unmodified _YVHKQFPM_ REV__ENSG00000134874|ENST00000376829|DZIP1;REV__ENST00000466027.1_1_13:96289346-96294343:-|nuORF;REV__nc|ENSG00000134874|Q86YF9-2|DZIP1 5.760428011301431 0.5334459684533844 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 107887.5 NaN 2291 1889 4181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4184 30.031 NaN 40614 35 0 5159.4 0.327 + 19338 NPDEAEKAL 9 32 493.7430856085449 985.4716182838898 2 493.742919921875 MULTI HCD FTMS 0 0 0 4183 17205.66015625 0.06595538682675073 -11 0.1592082977294922 1 Unmodified _NPDEAEKAL_ ENSG00000205937|ENST00000320225|RNPS1;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-2|RNPS1;nc|ENSG00000205937|Q15287-3|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant 2.9952420565917617 0.3283108881486655 2 A{I|L} 2 7 20.969 0 0 2.1278 0 0 783.3414173810562 0 783.3414173810562 0 19.710040265111566 0 0 0 0 0 0 0 + A{I|L} 2.1278 + + 2 NaN NaN 94416.1 NaN 2292 1890 4183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4185 30.035 NaN 48246 35 0 4725.1 0.261 + -1 SRMFRMYV 8 25 553.2671411611951 1104.5197293891902 2 553.2672119140625 MULTI HCD FTMS 0 0 0 4183 10748.6240234375 0.5619209107388112 -41 0.6926326751708984 2 Oxidation (M) _SRMFRM(Oxidation (M))YV_ REV__ENSG00000106617|ENST00000287878|PRKAG2;REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF;REV__ENST00000488258.5_1_7:151265789-151372578:-|nuORF;REV__ENST00000491938.5_1_7:151269720-151329218:-|nuORF;REV__nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;REV__nc|ENSG00000106617|Q9UGJ0-3|PRKAG2 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93527.5 NaN 2293 1890 4183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4186 30.039 NaN 40722 35 0 5195.6 0.261 + 8139 GPAAHHLNNP 10 29 514.2564766269719 1026.4984003207437 2 514.2567138671875 MULTI HCD FTMS 0 0 0 4183 17561.0234375 0.5034066790752215 -6 0.0821075439453125 3 Unmodified _GPAAHHLNNP_ ENSG00000114374|ENST00000338981|USP9Y 3.5964929083625545 0.45626689593999237 2 G 1 9 5.4846 0 0 0.5343 0 0 570.2720342092188 396.18830286197505 966.4603370711939 0 0 0 0 0 0 0 0 0 + G 0.5343 + + 4 + NaN NaN 92524.7 NaN 2294 1890 4183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4187 30.042 NaN 12406 35 0 2511.8 0.261 + 1789 CLWPRWRM 8 13 574.2846563466251 NaN 0 574.2847290039062 PEAK HCD FTMS 0 0 0 4183 3951.38671875 0.5055599196495808 1 -0.01654052734375 4 Unmodified _CLWPRWRM_ ENST00000459739.5_1_10:79553706-79569486:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94871.9 NaN 2295 1890 4183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4189 30.048 NaN 22956 35 0 6290.6 0.327 -1 0 17 644.2679410039091 643.260664537309 1 644.2677001953125 MULTI HCD FTMS 0 0 0 4188 8434.939453125 0.4315448529699049 4 -0.06352996826171875 1 NaN NaN 2 [YN]{[QG]|[NA]}Y 5 -1 + 42.715 0 0 6.6404 6.6404 93.973 0 0 0 42.71529987308661 42.71529987308661 42.71529987308661 42.71529987308661 0 0.5 1.6989700043360187 0 0.4247425010840047 [YN]{[QG]|[NA]}Y 6.6404 - 5 NaN NaN 84304.9 NaN 2296 1891 4188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4190 30.052 NaN 35716 35 0 10069 0.264 -1 CIEPCTST 8 25 455.6858315715243 909.3571102098487 2 455.6856994628906 MULTI HCD FTMS 0 0 0 4188 16732.6015625 0.9735653758550424 -6 0.08184623718261719 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))IEPCTST_ ENSG00000118946|ENST00000377918|PCDH17;PCDH17|p.K1051N|1|0.12|ENSG00000118946|chr13:57724967-57724967|A/T|missense_variant 0.6903765706972694 0.5409681170271811 2 P 1 -1 1.9897 0 0 0.2188 0 0 671.2757025944175 138.00068079166252 809.2763833860799 0 0 0 0 0 0 0 0 0 P 0.2188 + + 2 + NaN NaN 85375.9 NaN 2297 1891 4188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4192 30.058 NaN 78910 35 0 16322 0.327 + 2617 DVAEVDTVRR 10 32 580.3070227306462 1158.5994925280922 2 580.3070678710938 MULTI HCD FTMS 0 0 0 4191 36500.26953125 0.5542279976549875 6 -0.10704803466796875 1 Unmodified _DVAEVDTVRR_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 27.223235318498237 0.2564750587861972 2 DV[HC]R 5 7 30.713 0 0 2.6509 0 0 530.3278675763687 0 530.3278675763687 0 25.228787452803374 0 0 0 0.8494850021680094 0 0 0 DV[HC]R 2.6509 - 18 NaN NaN 95599.4 NaN 2298 1892 4191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4193 30.062 NaN 31598 35 0 4963.8 0.261 + 18516 MSHYWWFL 8 23 585.2663526749753 1168.5181524167506 2 585.2666015625 MULTI HCD FTMS 0 0 0 4191 13215.8095703125 0.8177887477059536 1 -0.023206710815429688 2 Unmodified _MSHYWWFL_ REV__ENSG00000164023|ENST00000690982|SGMS2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86893.1 NaN 2299 1892 4191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4194 30.066 NaN 24766 35 0 5207 0.262 + 26183 SPPRQLSES 9 17 500.75655938494947 999.498565836699 2 500.75689697265625 MULTI HCD FTMS 0 0 0 4191 8636.8662109375 0.5564294374081048 -1 0.010227203369140625 3 Unmodified _SPPRQLSES_ ENSG00000119778|ENST00000238789|ATAD2B;ENST00000478885.1_1_2:24008884-24009082:-|nuORF;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 0.5247636613948944 0.34703895399870666 2 Q 1 8 6.9897 0 0 0.69932 0 0 149.10471527934675 719.3117159479124 868.4164312272592 0 0 0 0 0 0 0 0 0 + Q 0.69932 + + 1 + NaN NaN 95649.8 NaN 2300 1892 4191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4195 30.069 NaN 29686 35 0 4483.2 0.261 + 25381 SEGDITQKGY 10 27 549.2592396394155 1096.5039263456308 2 549.2592163085938 MULTI HCD FTMS 0 0 0 4191 14524.541015625 0.7486396702369985 5 -0.08689689636230469 4 Unmodified _SEGDITQKGY_ DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A 2.498486711656943 0.462078817294651 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 107043.9 NaN 2301 1892 4191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4196 30.072 NaN 22657 35 0 6473.2 0.261 -1 RRCCLCYF 8 17 617.7678378854449 1233.5211228376897 2 617.76806640625 MULTI HCD FTMS 0 0 0 4191 2079.992919921875 0.17497475495547984 -9 0.1357860565185547 5 3 Carbamidomethyl (C) _RRC(Carbamidomethyl (C))C(Carbamidomethyl (C))LC(Carbamidomethyl (C))YF_ ENST00000548782.1_1_12:100574458-100593468:-|nuORF 2.302733041254933 0.5385759549224092 2 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6999 0 0 905.3738708906118 0 905.3738708906118 0 20.969100130080562 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.6999 + + 1 NaN NaN 105407.5 NaN 2302 1892 4191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4197 30.076 NaN 23003 35 0 4110 0.261 + -1 DMTCCALLHC 10 14 640.7463921248423 1279.4782313164844 2 640.7439575195312 MULTI HCD FTMS 0 0 0 4191 12922.89453125 1 0 0 6 3 Carbamidomethyl (C) _DMTC(Carbamidomethyl (C))C(Carbamidomethyl (C))ALLHC(Carbamidomethyl (C))_ REV__nc|ENSG00000116580|Q3T8J9-2|GON4L 1.4819007175156935 0.4674597685733628 2 Y 1 -1 6.9897 0 0 0.54629 0 0 597.2398412791782 516.1515596979124 1113.3914009770906 0 0 0 0 0 0 0 0 0 Y 0.54629 - 4 + NaN NaN 104561.3 NaN 2303 1892 4191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4199 30.081 NaN 46119 35 0 9895.6 0.327 + 28039 TGAKLKHDA 9 18 470.76401160957573 939.5134702859515 2 470.7638244628906 MULTI HCD FTMS 0 0 0 4198 19272.18359375 0.8717896387050307 -1 0.023206710815429688 1 Unmodified _TGAKLKHDA_ REV__CON__Q3KUS7 3.2813086475875832 0.32614229037259 2 {[SA]|[TG]}A 3 -1 15.458 0 0 1.6453 0 0 0 707.384180454259 707.384180454259 15.45757490560675 0 0 0 0 0.5 0 0 0 {[SA]|[TG]}A 1.6453 + + 3 + NaN NaN 96170.7 NaN 2304 1893 4198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4200 30.086 NaN 81942 35 0 20773 0.261 -1 QREMQSCFF 9 30 416.8423806651841 NaN 0 416.8419189453125 PEAK HCD FTMS 0 0 0 4198 11694.3828125 0.9271614078179176 23 -0.37010765075683594 2 Carbamidomethyl (C),Oxidation (M) _QREM(Oxidation (M))QSC(Carbamidomethyl (C))FF_ ENSG00000176219|ENST00000315519|OR11H6 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87680.6 NaN 2305 1893 4198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4202 30.091 NaN 176560 35 0 56044 0.327 + 30602 VPATDRNAL 9 39 478.7618212682365 955.509089603273 2 478.76153564453125 MULTI HCD FTMS 0 0 0 4201 91098.59375 0.5896420072207584 8 -0.12073516845703125 1 Unmodified _VPATDRNAL_ ENSG00000104408|ENST00000220849|EIF3E 32.78568957990786 0.09846250359632436 2 VPAT 4 5 62.423 0 0 6.5329 0 0 0 584.2810152643186 584.2810152643186 55.43305028184122 0 0 0 0 0.5 1.6989700043360187 0.8494850021680094 0 + VPAT 6.5329 + + 11 + NaN NaN 104195.4 NaN 2306 1894 4201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4203 30.096 NaN 114300 35 0 9523.5 0.261 + 9252 HPLSDHEATL 10 39 560.275140829622 1118.535728726044 2 560.2748413085938 MULTI HCD FTMS 0 0 0 4201 52859.27734375 0.00847128239977275 114 -2.1599197387695312 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 34.40172386719151 0.19398797222092762 2 EAT{I|L} 4 6 38.404 0 0 3.4334 0 0 686.3140736310562 0 686.3140736310562 0 18.711375162600703 0 0 0 0.5 0 0.9247425010840047 0 + EAT{I|L} 3.4334 + + 32 NaN NaN 108199.8 NaN 2307 1894 4201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4204 30.099 NaN 25495 35 0 4695 0.261 + -1 FYERCVSCC 9 18 640.7463921248423 1279.4782313164844 2 640.7459716796875 MULTI HCD FTMS 0 0 0 4201 11576.142578125 0.8957855804000954 2 -0.04004859924316406 3 3 Carbamidomethyl (C) _FYERC(Carbamidomethyl (C))VSC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000164603|ENST00000297145|BMT2 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96032.1 NaN 2308 1894 4201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4205 30.102 NaN 24975 35 0 4685.9 0.262 + 19433 NPMTKEPKL 9 20 529.2887888129526 1056.563024692705 2 529.2890625 MULTI HCD FTMS 0 0 0 4201 6404.09375 0.3935433321875126 -6 0.08524894714355469 4 Unmodified _NPMTKEPKL_ ENSG00000136731|ENST00000259253|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF;nc|ENSG00000136731|Q9NYU2-2|UGGT1 1.6526216038709556 0.33848895094777925 2 D 1 9 5.4846 0 0 0.51909 0 0 585.303913219852 353.21958337955317 938.5234965994052 0 0 0 0 0 0 0 0 0 D 0.51909 - 3 + NaN NaN 82238.8 NaN 2309 1894 4201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4206 30.106 NaN 16742 35 0 2606.8 0.261 -1 WVLLLPSCC 9 20 574.2846563466251 NaN 0 574.30322265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _WVLLLPSC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENST00000222990.7_1_7:2293201-2294050:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88427.3 NaN 2310 1894 4201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4208 30.111 NaN 130530 35 0 35099 0.327 -1 NADPQAVTM 9 28 481.716065843982 961.417578754764 2 481.7158203125 MULTI HCD FTMS 0 0 0 4207 49863.06640625 0.017314377838837745 35 -0.5389003753662109 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 2 AVT{M(Oxidation (M))|F} 4 -1 46.186 0 0 4.8039 0 0 525.2167835919937 0 525.2167835919937 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 AVT{M(Oxidation (M))|F} 4.8039 + + 30 NaN NaN 100519.7 NaN 2311 1895 4207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4209 30.116 NaN 36701 35 0 6787.1 0.261 + 14351 LDYSATPVRL 10 25 567.8113941328099 1133.6082353324198 2 568.3271484375 MULTI HCD FTMS 0 0 0 4207 4474.95556640625 0.6378546939661832 -4 0.06352996826171875 2 Unmodified _LDYSATPVRL_ REV__ENSG00000107862|ENST00000369983|GBF1;REV__nc|ENSG00000107862|Q92538-1|GBF1;REV__nc|ENSG00000107862|Q92538-2|GBF1;REV__nc|ENSG00000107862|Q92538-3|GBF1 2.9952420565917617 0.4594494122822477 2 Y 1 -1 5.4846 0 0 0.48381 0 0 127.0618328568407 840.4605196588499 967.5223525156906 0 0 0 0 0 0 0 0 0 Y 0.48381 + + 3 + NaN NaN 96760.9 NaN 2312 1895 4207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4210 30.119 NaN 17030 35 0 5695.8 0.261 + 16256 LQEEKQHLEN 10 14 634.3176122769652 1266.6206716207303 2 634.3174438476562 MULTI HCD FTMS 0 0 0 4207 7545.951171875 0.7214801640559918 -1 0.019931793212890625 3 Unmodified _LQEEKQHLEN_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87577.6 NaN 2313 1895 4207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4211 30.123 NaN 22686 35 0 5326.3 0.262 + -1 SDCALRFSR 9 14 556.2717366618164 NaN 0 556.2718505859375 PEAK HCD FTMS 0 0 0 4207 4108.890625 0.40118405200751545 8 -0.12070465087890625 4 Carbamidomethyl (C) _SDC(Carbamidomethyl (C))ALRFSR_ REV__ENSG00000234828|ENST00000636793|IQCM 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82147.6 NaN 2314 1895 4207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4212 30.126 NaN 34574 35 0 6223.5 0.261 -1 0 21 524.725235875742 1047.4359188182839 2 524.72509765625 MULTI HCD FTMS 0 0 0 4207 8453.6923828125 0.24092830548371238 54 -0.9148750305175781 5 NaN NaN 2 R 1 -1 4.6041 0 0 0.43956 0 0 580.7209357633996 307.6007174127563 888.3216531761559 0 0 0 0 0 0 0 0 0 R 0.43956 - 2 + NaN NaN 88417.2 NaN 2315 1895 4207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4214 30.131 NaN 137400 35 0 26657 0.327 + 26327 SSAPVVVTR 9 29 458.26668730474904 914.5188216762981 2 458.2664489746094 MULTI HCD FTMS 0 0 0 4213 86706.46875 0.8072749998654352 2 -0.03362846374511719 1 Unmodified _SSAPVVVTR_ ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 28.494509381512117 0.11816142465008336 2 {[CA]|SS}A[VP]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 34.683 0 0 3.7925 3.7925 89.329 0 0 0 27.69340915973786 5.6424927368726046 5.6424927368726046 34.68310920309805 0 1.1549471895720984 0 0 0 + + {[CA]|SS}A[VP]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.7925 + + 26 + NaN NaN 100493.9 NaN 2316 1896 4213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4215 30.136 NaN 75087 35 0 9070.3 0.261 -1 MLDILMDYCH 10 28 442.8558283404721 1325.5456556216163 3 442.8559875488281 MULTI HCD FTMS 0 0 0 4213 29964.87890625 0.44698176659153466 21 -0.3367023468017578 2 Carbamidomethyl (C),Oxidation (M) _MLDILM(Oxidation (M))DYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 3.3196427980023873 0.4577323075863651 2 DPE 3 -1 31.198 0 0 2.3536 0 0 966.3962922486444 0 966.3962922486444 0 28.098943791441968 0 0 0 0.5 0 0 0 DPE 2.3536 - 5 NaN NaN 103826.6 NaN 2317 1896 4213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4216 30.139 NaN 14947 35 0 4782.6 0.261 + 30996 VSERQVTMTE 10 11 590.2874213894926 NaN 0 590.2869262695312 PEAK HCD FTMS 0 0 0 4213 2162.853271484375 0.381655401164269 1 -0.013477325439453125 3 Unmodified _VSERQVTMTE_ REV__ENST00000469838.5_1_3:50129612-50137427:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87329.4 NaN 2318 1896 4213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4218 30.145 NaN 27609 35 0 5034 0.327 -1 LPTENVDKM 9 19 531.7605471958286 1061.5065414584571 2 531.7604370117188 MULTI HCD FTMS 0 0 0 4217 23937.140625 0.2452163879035757 10 -0.13908767700195312 1 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 2.9952420565917617 0.3283108881486655 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.65847 0 0 440.2189570852134 471.1875094049438 911.4064664901572 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.65847 + + 5 + NaN NaN 85953.1 NaN 2319 1897 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4219 30.149 NaN 34962 35 0 5649.2 0.261 -1 MALEENMLL 9 20 553.2671411611951 1104.5197293891902 2 553.2660522460938 MULTI HCD FTMS 0 0 0 4217 8627.9189453125 0.4510538335845658 -34 0.5605278015136719 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MALEENMLL_ ENST00000370474.3_1_6:71298560-71298590:+|nuORF 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106698.4 NaN 2320 1897 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4220 30.153 NaN 17411 35 0 5263.5 0.261 + 23725 RQSIPLLMDA 10 14 572.3133182657774 1142.6120835983547 2 572.3131713867188 MULTI HCD FTMS 0 0 0 4217 8547.6767578125 0.893515170570665 1 -0.020151138305664062 3 Unmodified _RQSIPLLMDA_ REV__ENST00000397901.7_1_16:89712093-89712183:-|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82436.1 NaN 2321 1897 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4221 30.156 NaN 16659 35 0 4154.5 0.261 -1 MCLYSRMICN 10 11 645.7764192689217 1289.5382856046433 2 645.7760009765625 MULTI HCD FTMS 0 0 0 4217 11732.4296875 0.6251772132164061 -4 0.063690185546875 4 Carbamidomethyl (C) _MCLYSRMIC(Carbamidomethyl (C))N_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|193|1|anti-sense 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83566.2 NaN 2322 1897 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4222 30.16 NaN 40661 35 0 8045.9 0.264 + 27869 TDSPDGSSGLG 11 28 496.71220009468686 NaN 0 496.7122497558594 PEAK HCD FTMS 0 0 0 4217 4482.416015625 0.5990717508129734 24 -0.3900623321533203 5 Unmodified _TDSPDGSSGLG_ ENSG00000132823|ENST00000255174|OSER1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101830.1 NaN 2323 1897 4217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4224 30.165 NaN 354670 35 0 25147 0.327 + 19339 NPDEAEKAL 9 62 493.7430856085449 985.4716182838898 2 493.74310302734375 MULTI HCD FTMS 0 0 0 4223 227302.78125 0.8713320342256223 -3 0.053745269775390625 1 Unmodified _NPDEAEKAL_ ENSG00000205937|ENST00000320225|RNPS1;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-2|RNPS1;nc|ENSG00000205937|Q15287-3|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant 97.74103586103693 0.004323122048066454 2 [DP]DQAEKA{I|L} 9 2 + 78.84 0 0 8.0002 8.0002 88.071 0 0 0 1.4779266222445955 1.4779266222445955 1.4779266222445955 1.4779266222445955 0 1.805462187404089 0 0.7742275032520141 1.7179001828205482 [DP]DQAEKA{I|L};NPDEAEKA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]AEKA{I|L};[DP]DQAV{[SA]|[TG]}A{I|L};[DP]D[AG]AEKA{I|L};NPDEA{I|L}[SG]A{I|L};[DP]DQAV[QT]{I|L};[DP]D[DV]NKA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]AV{[SA]|[TG]}A{I|L};[DP]D[AG]AV{[SA]|[TG]}A{I|L} 8.0002;7.8502;6.1783;6.0997;6.0635;5.9989;4.5432;4.5115;4.2778;3.7811 -;+;-;-;-;-;-;-;-;- + 190 NaN NaN 137377.9 NaN 2324 1898 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4225 30.17 NaN 49615 35 0 7673.2 0.261 + 9913 IDEEPIYEP 9 29 552.7607656185348 NaN 0 552.760986328125 PEAK HCD FTMS 0 0 0 4223 9221.4248046875 0.4678720622168622 1 -0.010158538818359375 2 Unmodified _IDEEPIYEP_ ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107081.4 NaN 2325 1898 4223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4227 30.175 NaN 51253 35 0 6576.4 0.327 + 19376 NPEDKSPQL 9 23 514.2564766269719 1026.4984003207437 2 514.2565307617188 MULTI HCD FTMS 0 0 0 4226 22779.86328125 0.6530106496933283 3 -0.036899566650390625 1 Unmodified _NPEDKSPQL_ ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ 5.296884461304476 0.3108627248283497 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90087.1 NaN 2326 1899 4226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4228 30.179 NaN 25827 35 0 6128.5 0.261 + -1 SVSRLIQTM 9 18 525.7844789997215 1049.554405066243 2 525.7842407226562 MULTI HCD FTMS 0 0 0 4226 5206.39453125 0.6223512836864605 1 -0.013265609741210938 2 Oxidation (M) _SVSRLIQTM(Oxidation (M))_ REV__ENST00000520817.5_1_8:41367533-41367725:+|nuORF 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 98467.8 NaN 2327 1899 4226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4229 30.183 NaN 45608 35 0 11011 0.261 + -1 MYRVCYNM 8 36 548.224218577208 1094.433884221216 2 548.2245483398438 MULTI HCD FTMS 0 0 0 4226 7765.89892578125 0.33462262152596167 -4 0.06390380859375 3 Oxidation (M) _MYRVCYNM(Oxidation (M))_ REV__ENSG00000185634|ENST00000332408|SHC4 7.910154910731844 0.5302565402355366 2 YN{M(Oxidation (M))|F} 3 -1 30.445 0 0 2.7818 0 0 652.2820912091812 0 652.2820912091812 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 YN{M(Oxidation (M))|F} 2.7818 + + 5 NaN NaN 92152.6 NaN 2328 1899 4226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4231 30.189 NaN 46095 35 0 4900.6 0.327 + 7423 FVRHESETT 9 29 553.2671411611951 1104.5197293891902 2 553.2682495117188 MULTI HCD FTMS 0 0 0 4230 13231.0556640625 0.6916984753187221 -31 0.4936714172363281 1 Unmodified _FVRHESETT_ ENSG00000106028|ENST00000265304|SSBP1;ENST00000489378.5_1_7:141438966-141445458:+|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85989.4 NaN 2329 1900 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4232 30.193 NaN 11934 35 0 5515.6 0.261 + 22086 QHRKVPQRM 9 9 590.330810546875 NaN 0 590.330810546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QHRKVPQRM_ ENSG00000187720|ENST00000261862|THSD4;nc|ENSG00000187720|Q6ZMP0-2|THSD4 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88424.2 NaN 2330 1900 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4233 30.196 NaN 32447 35 0 11393 0.262 + 26250 SQEPNQKY 8 18 497.2354146460935 992.456276358987 2 497.73699951171875 MULTI HCD FTMS 0 0 0 4230 4936.22705078125 0.08228923915115255 -10 0.1572399139404297 3 Unmodified _SQEPNQKY_ REV__ENSG00000184110|ENST00000331666|EIF3C;REV__ENSG00000205609|ENST00000380876|EIF3CL;REV__nc|ENSG00000184110|Q99613-2|EIF3C 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 85965 NaN 2331 1900 4230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4235 30.202 NaN 17714 35 0 4227.1 0.327 -1 RRCCLCYF 8 12 617.7678378854449 1233.5211228376897 2 617.7674560546875 MULTI HCD FTMS 0 0 0 4234 11887.388671875 1 0 0 1 3 Carbamidomethyl (C) _RRC(Carbamidomethyl (C))C(Carbamidomethyl (C))LC(Carbamidomethyl (C))YF_ ENST00000548782.1_1_12:100574458-100593468:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105854.9 NaN 2332 1901 4234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4236 30.206 NaN 62225 35 0 10438 0.261 -1 0 28 585.9273508706017 1754.7602232120048 3 585.9269409179688 MULTI HCD FTMS 0 0 0 4234 14723.5986328125 0.15101621719814376 -9 0.1439380645751953 2 NaN NaN 2 NYG 3 -1 35.445 0 0 2.02 0 0 0 1417.6100724128128 1417.6100724128128 35.44531259372398 0 0 0 0 0.9247425010840047 0 0 0 NYG 2.02 - 8 + NaN NaN 93296.6 NaN 2333 1901 4234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4238 30.212 NaN 79237 35 0 20188 0.327 + 30594 VPALSEGQR 9 30 478.7618212682365 955.509089603273 2 478.7613830566406 MULTI HCD FTMS 0 0 0 4237 45246.84375 0.292863354645955 16 -0.2727203369140625 1 Unmodified _VPALSEGQR_ ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6 9.38312468134398 0.279288223203164 2 VPA 3 6 31.198 0 0 3.2651 0 0 0 685.3264864557249 685.3264864557249 27.21848749616356 0 0 0 0 0.5 0 0 0 + VPA 3.2651 + + 7 + NaN NaN 94119.8 NaN 2334 1902 4237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4239 30.216 NaN 42946 35 0 7654 0.261 + 7912 GAAQDGDTHPS 11 29 528.2233163083772 1054.4320796835543 2 528.2227783203125 MULTI HCD FTMS 0 0 0 4237 12511.794921875 0.7830835665242003 -1 0.010168075561523438 2 Unmodified _GAAQDGDTHPS_ ENSG00000002746|ENST00000395891|HECW1;nc|ENSG00000002746|Q76N89-2|HECW1 1.0714618166137932 0.41422159895841093 2 [QA]Q 3 9 10.458 0 0 0.99177 0 0 0 724.2542442649058 724.2542442649058 8.863781092484688 0 0 0 0 0 0 0 0 [QA]Q 0.99177 - 3 + NaN NaN 80090.1 NaN 2335 1902 4237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4240 30.22 NaN 29534 35 0 6198.9 0.261 -1 LHVSLRSS 8 18 470.76401160957573 939.5134702859515 2 470.7638244628906 MULTI HCD FTMS 0 0 0 4237 5142.18505859375 0.23261005337452603 8 -0.1285724639892578 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LHVSLRSS_ ENST00000295049.8_1_2:198540403-198540484:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114934.6 NaN 2336 1902 4237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4241 30.223 NaN 33191 35 0 4733.1 0.261 + 16839 LYEEDKAGHW 10 27 624.2877068390551 NaN 0 624.2880859375 PEAK HCD FTMS 0 0 0 4237 9412.4990234375 0.929335440819702 1 -0.019901275634765625 4 Unmodified _LYEEDKAGHW_ REV__ZNF749|p.V58Yfs*9|1|0.23|ENSG00000186230|chr19:57443319-57443319|G/-|frameshift_variant 1.4819007175156935 0.33891598740166873 2 E 1 -1 3.9794 0 0 0.31923 0 0 712.3280249068226 402.16672693424067 1114.4947518410634 0 0 0 0 0 0 0 0 0 E 0.31923 + + 1 + NaN NaN 92765.1 NaN 2337 1902 4237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4242 30.227 NaN 13333 35 0 2875 0.261 + 31261 VVTYFLAIFKG 11 12 629.36572265625 NaN 0 629.36572265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VVTYFLAIFKG_ REV__ENSG00000196242|ENST00000641802|OR2C3;REV__ENSG00000204700|ENST00000641417|OR2J2;REV__ENSG00000204701|ENST00000641151|OR2J3;REV__ENSG00000204702|ENST00000641659|OR2J1;REV__nc|ENSG00000204700|O76002|OR2J2;REV__nc|ENSG00000204701|O76001|OR2J3 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104347.9 NaN 2338 1902 4237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4244 30.232 NaN 123660 35 0 12923 0.327 + 9253 HPLSDHEATL 10 39 560.2750703400667 1118.5355877469333 2 560.2750854492188 MULTI HCD FTMS 0 0 0 4243 67307.15625 0.8693865070915724 -2 0.030069351196289062 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 36.12702656103203 0.1790159924230938 2 HT{I|L} 3 7 27.92 0 0 2.4961 0 0 749.3388539044937 0 749.3388539044937 0 4.503187623076954 0 0 0 0.4247425010840047 0 0.5 0 HT{I|L} 2.4961 - 49 NaN NaN 103303.5 NaN 2339 1903 4243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4245 30.236 NaN 149970 35 0 20950 0.262 + 4342 EVVSGVVSK 9 40 452.26080672412525 902.5070605150505 2 452.2605285644531 MULTI HCD FTMS 0 0 0 4243 60517.921875 0.35817729907945545 -6 0.08711051940917969 2 Unmodified _EVVSGVVSK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 10.799506525563784 0.2670509983294061 2 {NN|[MP]|[D{I|L}]|[EV]}VSRV 6 4 42.396 0 0 4.6976 0 0 0 230.11420618228752 230.11420618228752 16.682437647924218 0 0 0 0 0 1.3979400086720375 0 0 {NN|[MP]|[D{I|L}]|[EV]}VSRV 4.6976 - 117 + NaN NaN 101763 NaN 2340 1903 4243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4246 30.24 NaN 74834 35 0 11928 0.261 + 10447 IPDEKETRL 9 38 550.8009739991738 1099.5873950651476 2 550.80078125 MULTI HCD FTMS 0 0 0 4243 24763.01953125 0.6569151479950323 -6 0.08711051940917969 3 Unmodified _IPDEKETRL_ ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;nc|ENSG00000135655|Q9Y4E8-4|USP15 7.101721422024254 0.29718071671418667 2 {I|L}PD 3 6 30.445 0 0 2.7688 0 0 0 771.3999117486936 771.3999117486936 30.445312593723983 0 0 0 0 0 0 0.4247425010840047 0 + {I|L}PD 2.7688 + + 4 + NaN NaN 90940.4 NaN 2341 1903 4243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4248 30.246 NaN 102830 35 0 11050 0.327 + 19471 NPTEPDHAI 9 44 497.2354146460935 992.456276358987 2 497.2353210449219 MULTI HCD FTMS 0 0 0 4247 51944.5078125 0.44647135777071634 -6 0.08045578002929688 1 Unmodified _NPTEPDHAI_ ENSG00000158435|ENST00000289382|CNOT11 41.8396318013385 0.056899836730939755 2 NPTEKE 6 5 55.438 0 0 5.586 0 0 0 291.1087740533813 291.1087740533813 44.98055982231925 0 0 0 0 0.8807196863200843 0 0.8494850021680094 0 NPTEKE 5.586 - 45 + NaN NaN 98253.5 NaN 2342 1904 4247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4249 30.25 NaN 125290 35 0 18794 0.261 -1 HPTDVDYRVM 10 48 416.86072972789185 1247.5603597838756 3 416.860595703125 MULTI HCD FTMS 0 0 0 4247 18962.02734375 0.28659736612439074 -6 0.08045578002929688 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 31.635753872319068 0.2179907440432224 2 EWVD[YR]V{M(Oxidation (M))|F} 8 -1 53.353 0 0 4.2766 0 0 135.06854445625157 0 135.06854445625157 0 46.36291294060548 0 0 0 1.5 0 0.9247425010840047 0 EWVD[YR]V{M(Oxidation (M))|F} 4.2766 - 88 NaN NaN 102154.5 NaN 2343 1904 4247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4250 30.253 NaN 16167 35 0 2600.5 0.261 + 26285 SRIDKGLIYA 10 15 568.3272441851352 1134.6399354370703 2 568.3264770507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SRIDKGLIYA_ REV__ENSG00000165029|ENST00000374736|ABCA1 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86565.2 NaN 2344 1904 4247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4252 30.259 NaN 142210 35 0 31795 0.326 -1 NADPQAVTM 9 48 481.716065843982 961.417578754764 2 481.7158508300781 MULTI HCD FTMS 0 0 0 4251 49638.578125 0.017236426858240478 45 -0.7872333526611328 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 23.789781309258295 0.1548179064208189 2 AVT{M(Oxidation (M))|F} 4 -1 40.918 0 0 4.256 0 0 525.2179765592547 0 525.2179765592547 0 25.70107520596089 0 0 0 1.5 0 0 0 AVT{M(Oxidation (M))|F} 4.256 + + 70 + NaN NaN 123063.7 NaN 2345 1905 4251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4253 30.263 NaN 54544 35 0 7728.3 0.261 -1 HPTDVDYRVM 10 24 624.7877293789655 1247.560905824731 2 624.787353515625 MULTI HCD FTMS 0 0 0 4251 34261.44140625 0.626427542865746 -7 0.09392929077148438 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 13.90604991867851 0.3810395177745597 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 102108.9 NaN 2346 1905 4251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4254 30.267 NaN 36944 35 0 7300.4 0.262 + 5026 FDENPYFK 8 16 530.2426647773682 1058.4707766215363 2 530.2423095703125 MULTI HCD FTMS 0 0 0 4251 8065.474609375 0.5951804988851688 2 -0.025007247924804688 3 Unmodified _FDENPYFK_ ENST00000437270.1_1_9:140535772-140535991:-|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88120.6 NaN 2347 1905 4251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4255 30.27 NaN 17335 35 0 3326.8 0.261 -1 0 16 569.3168845726107 1136.6192162120212 2 569.3175048828125 MULTI HCD FTMS 0 0 0 4251 4540.8671875 0.044726302249339066 30 -0.4777984619140625 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90381.2 NaN 2348 1905 4251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4257 30.276 NaN 31079 35 0 5865.9 0.411 + 8636 HEPEWPLI 8 22 510.7608451655134 1019.5071373978268 2 510.7609558105469 MULTI HCD FTMS 0 0 0 4256 5945.77197265625 0.40619301069770203 -7 0.10054588317871094 1 Unmodified _HEPEWPLI_ REV__ENSG00000180488|ENST00000370791|MIGA1;REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1;REV__nc|ENSG00000180488|Q8NAN2|MIGA1 2.302733041254933 0.5385759549224092 2 V{I|L} 2 -1 20.969 0 0 2.0568 0 0 789.3453236310562 0 789.3453236310562 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.0568 - 1 NaN NaN 97059.5 NaN 2349 1906 4256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4259 30.284 NaN 145810 35 0 13786 0.327 + 19340 NPDEAEKAL 9 45 493.7430856085449 985.4716182838898 2 493.7430114746094 MULTI HCD FTMS 0 0 0 4258 108526.453125 0.41602031725556765 6 -0.11702728271484375 1 Unmodified _NPDEAEKAL_ ENSG00000205937|ENST00000320225|RNPS1;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-2|RNPS1;nc|ENSG00000205937|Q15287-3|RNPS1;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant 70.92866715596459 0.008787713425443074 2 NPDEAEKA{I|L} 9 0 + 68.669 0 0 6.9681 6.9681 88.021 0 0 0 5.982587709797329 5.982587709797329 5.982587709797329 5.982587709797329 0 2.4049471895720984 0 0.3807196863200844 0 + + NPDEAEKA{I|L};[NP]DEAEKA{I|L};[DP]NEAEKA{I|L};[DP]GGEAEKA{I|L} 6.9681;6.361;6.2355;4.9465 +;+;-;- + 80 + NaN NaN 114819 NaN 2350 1907 4258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4260 30.288 NaN 180200 35 0 30815 0.261 + -1 EQSCQAQL 8 41 482.21466345962324 962.4147739860465 2 482.2134704589844 MULTI HCD FTMS 0 0 0 4258 44578.98828125 0.6247853778964061 -3 0.03848075866699219 2 Carbamidomethyl (C) _EQSC(Carbamidomethyl (C))QAQL_ REV__ENSG00000226321|ENST00000690015|CROCC2 22.736283301280096 0.42650828432173493 2 QAQ{I|L} 4 -1 37.779 0 0 3.9255 0 0 504.16426284004064 0 504.16426284004064 0 11.537661879701773 0 0 0 0.8494850021680094 0 0 0.4247425010840047 QAQ{I|L} 3.9255 + + 68 NaN NaN 115310.6 NaN 2351 1907 4258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4261 30.292 NaN 73164 35 0 7932.1 0.261 + 18430 MPVAEGKSV 9 38 459.2416831497347 916.4688133662694 2 459.2415771484375 MULTI HCD FTMS 0 0 0 4258 34060.6953125 0.8242073059262321 2 -0.033428192138671875 3 Unmodified _MPVAEGKSV_ ENSG00000124641|ENST00000265350|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF;nc|ENSG00000288721|Q9H944-2|MED20 18.373094154950223 0.20161688160436167 2 MPVAE 5 4 40.305 0 0 4.3979 0 0 0 386.20429407291255 386.20429407291255 36.32576888900239 0 0 0 0 0.7742275032520141 0 0 0 + MPVAE 4.3979 + + 20 + NaN NaN 109605.4 NaN 2352 1907 4258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4262 30.295 NaN 25280 35 0 5433.7 0.261 + -1 YKKMKKTD 8 22 529.2887888129526 1056.563024692705 2 529.2888793945312 MULTI HCD FTMS 0 0 0 4258 3830.699951171875 0.23540355314047698 7 -0.14048385620117188 4 Oxidation (M) _YKKM(Oxidation (M))KKTD_ REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF 0.6014990680409731 0.5410999795511968 2 A 1 -1 1.5938 0 0 0.15085 0 0 706.175739391727 276.32917200260005 982.5049113943271 0 0 0 0 0 0 0 0 0 A 0.15085 - 1 + NaN NaN 107762.8 NaN 2353 1907 4258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4263 30.298 NaN 33320 35 0 4865.1 0.261 + 8637 HEPEWPLI 8 25 510.7608451655134 1019.5071373978268 2 510.7610168457031 MULTI HCD FTMS 0 0 0 4258 4667.00732421875 0.3188325695453372 -6 0.0820465087890625 5 Unmodified _HEPEWPLI_ REV__ENSG00000180488|ENST00000370791|MIGA1;REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1;REV__nc|ENSG00000180488|Q8NAN2|MIGA1 2.302733041254933 0.5385759549224092 2 V{I|L} 2 -1 20.969 0 0 2.0568 0 0 789.3421498029312 0 789.3421498029312 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.0568 - 2 NaN NaN 85694.8 NaN 2354 1907 4258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4264 30.302 NaN 18096 35 0 4633 0.261 -1 0 18 569.3168845726107 1136.6192162120212 2 569.3163452148438 MULTI HCD FTMS 0 0 0 4258 4166.5498046875 0.04103937820827925 32 -0.5317039489746094 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85089.7 NaN 2355 1907 4258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4266 30.307 NaN 20554 35 0 5341.4 0.327 -1 MKMMMTMILC 10 14 645.7764192689217 1289.5382856046433 2 645.7766723632812 MULTI HCD FTMS 0 0 0 4265 6846.37890625 0.36481787653866654 7 -0.13068580627441406 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))KMMMTMILC_ ENST00000341864.5_1_X:77387087-77387138:-|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93011.9 NaN 2356 1908 4265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4267 30.312 NaN 35932 35 0 10453 0.263 + -1 PFMMMYGR 8 24 524.7256482461023 1047.4367435590045 2 524.7254028320312 MULTI HCD FTMS 0 0 0 4265 3231.856689453125 0.4128608883937296 -3 0.04823493957519531 2 Oxidation (M) _PFMMM(Oxidation (M))YGR_ REV__ENSG00000133124|ENST00000372129|IRS4;REV__nc|ENSG00000133124|O14654|IRS4 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88891.1 NaN 2357 1908 4265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4269 30.317 NaN 181500 35 0 20971 0.327 -1 0 33 492.24475415366277 491.2374776870628 1 492.2432861328125 MULTI HCD FTMS 0 0 0 4268 115404.515625 0.9768842901128063 1 -0.023265838623046875 1 NaN NaN 2 SQ{[TV]|[{I|L}S]} 4 -1 21.075 0 0 4.2902 0 0 58.0205415071784 0 58.0205415071784 0 20.10574239612792 0 0 0 0 0 0.6505149978319906 0.28872548999643577 SQ{[TV]|[{I|L}S]} 4.2902 - 10 + NaN NaN 106556.7 NaN 2358 1909 4268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4270 30.322 NaN 39681 35 0 4063.8 0.261 + 9599 HSLAGLWW 8 29 485.2507107278867 NaN 0 485.2507629394531 PEAK HCD FTMS 0 0 0 4268 12114.8046875 0.600207540027512 29 -0.4595661163330078 2 Unmodified _HSLAGLWW_ ENST00000478824.1_1_17:46783758-46784010:+|nuORF 2.577480529830294 0.38822285293237185 2 W 1 7 6.9897 0 0 0.72171 0 0 224.11108834854844 555.2890108697874 779.4000992183358 0 0 0 0 0 0 0 0 0 + W 0.72171 + + 2 + NaN NaN 99292.5 NaN 2359 1909 4268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4271 30.325 NaN 19742 35 0 5854.8 0.261 -1 LMINSVNIID 10 16 574.3067569720088 1146.5989610108174 2 574.306884765625 MULTI HCD FTMS 0 0 0 4268 7355.59912109375 0.6593097712755589 -2 0.033428192138671875 3 Oxidation (M) _LM(Oxidation (M))INSVNIID_ tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104743.2 NaN 2360 1909 4268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4272 30.329 NaN 44942 35 0 4728.7 0.261 + -1 CGLPWRCLT 9 35 553.2671411611951 1104.5197293891902 2 553.267333984375 MULTI HCD FTMS 0 0 0 4268 16037.7900390625 0.8384300693127912 -22 0.32456207275390625 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))GLPWRCLT_ REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 -1 0.48455 0 0 0.04387 0 0 533.722013180009 420.73493372135005 954.4569469013591 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.04387 - 2 + NaN NaN 92352.7 NaN 2361 1909 4268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4273 30.332 NaN 28973 35 0 4784.3 0.261 -1 TECSWDHM 8 23 533.1908842748642 NaN 0 533.2461547851562 PEAK HCD FTMS 0 0 0 4268 6894.43896484375 0.38252099992544536 124 -2.371549606323242 5 Carbamidomethyl (C) _TEC(Carbamidomethyl (C))SWDHM_ ATRNL1|p.A139S|1|0.18|ENSG00000107518|chr10:115121736-115121736|G/T|missense_variant;ATRNL1|p.G185Afs*15|1|0.38|ENSG00000107518|chr10:115127654-115127654|G/-|frameshift_variant;ENSG00000107518|ENST00000355044|ATRNL1;nc|ENSG00000107518|Q5VV63-2|ATRNL1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94487 NaN 2362 1909 4268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4274 30.335 NaN 111390 35 0 11425 0.261 + 17806 MFLYFLVI 8 35 523.2930499764691 1044.571547019738 2 523.2929077148438 MULTI HCD FTMS 0 0 0 4268 9184.7373046875 0.8522001859312055 -3 0.041660308837890625 6 Unmodified _MFLYFLVI_ ENSG00000139155|ENST00000266509|SLCO1C1;nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;nc|ENSG00000139155|Q9NYB5-3|SLCO1C1;nc|ENSG00000139155|Q9NYB5-4|SLCO1C1 6.354104778181461 0.5325651638111438 2 V{I|L} 2 6 23.583 0 0 2.2577 0 0 814.4112415998062 0 814.4112415998062 0 16.593793813122062 0 0 0 0.5 0 0 0 + V{I|L} 2.2577 + + 4 NaN NaN 106367.7 NaN 2363 1909 4268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4276 30.341 NaN 313760 35 0 50365 0.327 -1 0 42 585.9273508706017 1754.7602232120048 3 585.9275512695312 MULTI HCD FTMS 0 0 0 4275 97496.8046875 1 0 0 1 NaN NaN 2 NYGGSS 6 -1 73.761 0 0 4.2035 0 0 0 1186.5208686931192 1186.5208686931192 57.562893943202624 0 0 0 0 1.774227503252014 0 1.1861818737241734 0 NYGGSS 4.2035 - 103 + NaN NaN 133221.4 NaN 2364 1910 4275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4277 30.345 NaN 108660 35 0 23828 0.262 -1 SSGPVDPMM 9 25 476.69108146105754 951.3676099889151 2 476.69091796875 MULTI HCD FTMS 0 0 0 4275 29548.90625 0.14195244987381286 -10 0.1522064208984375 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.5485 0 0 427.20726101365204 406.1108886734629 833.318149687115 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 4 + NaN NaN 113812.5 NaN 2365 1910 4275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4278 30.349 NaN 111450 35 0 7491.2 0.261 + 22249 QPADAERAL 9 36 485.7513590313445 969.4881651294891 2 485.7510986328125 MULTI HCD FTMS 0 0 0 4275 51350.72265625 0.0781685788332248 -7 0.10867118835449219 3 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 19.361941925380144 0.1930734562688509 2 [QP]ADAERA{I|L} 9 0 + 35.34 0 0 3.6452 3.6452 89.235 0 0 0 11.0996153466158 8.384767769392745 8.384767769392745 35.33986249165786 0 0.4247425010840047 0 0 0 + + [QP]ADAERA{I|L} 3.6452 + + 59 + NaN NaN 96262.9 NaN 2366 1910 4275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4279 30.352 NaN 43953 35 0 6028.3 0.261 + 17817 MGDPHQQTL 9 28 513.7371809479582 1025.4598089627164 2 513.7373657226562 MULTI HCD FTMS 0 0 0 4275 21133.091796875 0.5261396023448595 -4 0.0649261474609375 4 Unmodified _MGDPHQQTL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 5.731851221503515 0.3075653528928475 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92032.5 NaN 2367 1910 4275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4280 30.355 NaN 15334 35 0 2643.9 0.261 + 14736 LHRDIKDEN 9 15 570.2938449930249 1138.5731370528497 2 570.7620239257812 MULTI HCD FTMS 0 0 0 4275 1883.989013671875 0.0020271273928786646 -18 0.28267860412597656 5 Unmodified _LHRDIKDEN_ ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 80558 NaN 2368 1910 4275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4281 30.359 NaN 45477 35 0 9125.7 0.261 + 32038 VYPPIRHHL 9 23 566.3246606567282 NaN 0 566.3251953125 PEAK HCD FTMS 0 0 0 4275 1958.6920166015625 0.2851159316384409 -4 0.0649261474609375 6 Unmodified _VYPPIRHHL_ ENSG00000155975|ENST00000324849|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;nc|ENSG00000155975|Q8NEZ2-3|VPS37A 1.844237919475145 0.28630992268396543 2 P 1 8 6.9897 0 0 0.61821 0 0 262.1332241637669 768.4179171197874 1030.5511412835542 0 0 0 0 0 0 0 0 0 + P 0.61821 + + 1 + NaN NaN 84744.5 NaN 2369 1910 4275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4283 30.364 NaN 138100 35 0 11839 0.327 + 9254 HPLSDHEATL 10 43 560.2750703400667 1118.5355877469333 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4282 58670.046875 0.7578235356445485 6 -0.10400962829589844 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 41.8396318013385 0.12944265636084 2 {M(Oxidation (M))|F}AT{I|L} 4 7 38.175 0 0 3.413 0 0 668.3004017560562 0 668.3004017560562 0 16.721675119240516 0 0 0 0.4247425010840047 0 0.5 0 {M(Oxidation (M))|F}AT{I|L} 3.413 - 15 NaN NaN 104582.5 NaN 2370 1911 4282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4284 30.369 NaN 88039 35 0 18086 0.261 + 13016 KYISKPENL 9 24 546.3086232000261 1090.602693466852 2 546.308349609375 MULTI HCD FTMS 0 0 0 4282 59267.71484375 0.19378405533782936 -6 0.10513496398925781 2 Unmodified _KYISKPENL_ ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF 15.738622578938676 0.22437813149664254 2 KY{I|L}SK 5 4 44.949 0 0 4.1214 0 0 0 468.20844446353755 468.20844446353755 44.94850021680094 0 0 0 0 1 0 0 0 + KY{I|L}SK 4.1214 + + 15 + NaN NaN 91791.6 NaN 2371 1911 4282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4285 30.372 NaN 122190 35 0 15847 0.261 + 9034 HPEPTDHVL 9 33 522.7590370492859 1043.5035211653717 2 522.7589111328125 MULTI HCD FTMS 0 0 0 4282 21826.263671875 1 0 0 3 Unmodified _HPEPTDHVL_ ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 20.969 0 0 2.0095 0 0 813.34014076302 0 813.34014076302 0 13.979400086720375 0 0 0 0 0 0 0 + V{I|L} 2.0095 + + 2 NaN NaN 117780.9 NaN 2372 1911 4282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4286 30.375 NaN 26900 35 0 6055.8 0.261 + 12153 KKKKKKKKKSF 11 18 469.3285295826401 NaN 0 469.3286437988281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95360.2 NaN 2373 1911 4282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4287 30.379 NaN 13549 35 0 3187.2 0.261 + -1 RKFFVKCSGC 10 10 644.8172876980884 1287.6200224629767 2 644.8175659179688 MULTI HCD FTMS 0 0 0 4282 4568.11328125 0.5090919380546046 8 -0.1308727264404297 5 2 Carbamidomethyl (C) _RKFFVKC(Carbamidomethyl (C))SGC(Carbamidomethyl (C))_ REV__ENSG00000082175|ENST00000325455|PGR;REV__ENSG00000113580|ENST00000394464|NR3C1;REV__ENSG00000151623|ENST00000358102|NR3C2;REV__ENSG00000169083|ENST00000374690|AR;REV__ENST00000513847.5_1_X:66764886-66909456:+|nuORF;REV__nc|ENSG00000082175|P06401-2|PGR;REV__nc|ENSG00000082175|P06401-5|PGR;REV__nc|ENSG00000113580|P04150-10|NR3C1;REV__nc|ENSG00000113580|P04150-11|NR3C1;REV__nc|ENSG00000113580|P04150-12|NR3C1;REV__nc|ENSG00000113580|P04150-13|NR3C1;REV__nc|ENSG00000113580|P04150-14|NR3C1;REV__nc|ENSG00000113580|P04150-15|NR3C1;REV__nc|ENSG00000113580|P04150-16|NR3C1;REV__nc|ENSG00000113580|P04150-2|NR3C1;REV__nc|ENSG00000113580|P04150-3|NR3C1;REV__nc|ENSG00000113580|P04150-5|NR3C1;REV__nc|ENSG00000113580|P04150-6|NR3C1;REV__nc|ENSG00000113580|P04150-7|NR3C1;REV__nc|ENSG00000113580|P04150-8|NR3C1;REV__nc|ENSG00000113580|P04150-9|NR3C1;REV__nc|ENSG00000151623|P08235-2|NR3C2;REV__nc|ENSG00000151623|P08235-3|NR3C2;REV__nc|ENSG00000151623|P08235-4|NR3C2;REV__nc|ENSG00000169083|P10275-2|AR;REV__nc|ENSG00000169083|P10275-3|AR;REV__nc|ENSG00000169083|P10275-4|AR 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 88977 NaN 2374 1911 4282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4289 30.384 NaN 185800 35 0 24783 0.327 + 4343 EVVSGVVSK 9 39 452.26080672412525 902.5070605150505 2 452.2606201171875 MULTI HCD FTMS 0 0 0 4288 93594.421875 0.5539416456720591 3 -0.053722381591796875 1 Unmodified _EVVSGVVSK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 27.223235318498237 0.1251536255799991 2 {NN|[MP]|[D{I|L}]|[EV]}VSGVVSK 9 0 + 53.822 0 0 5.9637 5.9637 93.18 0 0 0 24.301915820410684 13.601292910313347 13.601292910313347 53.82245020145518 0 0.3494850021680094 0 0.3494850021680094 0 + + {NN|[MP]|[D{I|L}]|[EV]}VSGVVSK 5.9637 + + 146 + NaN NaN 103613.9 NaN 2375 1912 4288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4290 30.389 NaN 180010 35 0 15726 0.261 + 32868 WYDSLYRVF 9 44 416.8735918221098 NaN 0 416.8606262207031 PEAK HCD FTMS 0 0 0 4288 2036.9071044921875 1 0 0 2 Unmodified _WYDSLYRVF_ REV__ENSG00000188869|ENST00000359440|TMC3;REV__ENST00000559982.1_1_15:81630174-81666445:-|nuORF;REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3;REV__TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant 6.2057823575117 0.2651744870083793 2 DVWV 4 -1 17.423 0 0 2.0948 0 0 167.45204878155965 162.0229433649047 329.4749921464644 0 0 0 0 0 0 0 0 0 DVWV 2.0948 - 25 + NaN NaN 123121.8 NaN 2376 1912 4288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4291 30.392 NaN 227830 35 0 50102 0.261 -1 SSGPVDPMM 9 33 476.69108146105754 951.3676099889151 2 476.69091796875 MULTI HCD FTMS 0 0 0 4288 74432.625 0.35757308172070873 -8 0.138671875 3 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 24.425 0 0 2.5673 0 0 427.2062887041073 0 427.2062887041073 0 18.940162615404077 0 0 0 1.4247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.5673 + + 5 NaN NaN 116615.2 NaN 2377 1912 4288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4292 30.396 NaN 80166 35 0 17691 0.261 + 10448 IPDEKETRL 9 28 550.8009739991738 1099.5873950651476 2 550.80078125 MULTI HCD FTMS 0 0 0 4288 33330.671875 0.8841984403359324 3 -0.053722381591796875 4 Unmodified _IPDEKETRL_ ENSG00000135655|ENST00000280377|USP15;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;nc|ENSG00000135655|Q9Y4E8-4|USP15 12.174745833636585 0.2551692358394414 2 {I|L}PDEKE 6 3 47.964 0 0 4.362 0 0 0 385.2196138971313 385.2196138971313 47.96388461952553 0 0 0 0 0.3807196863200844 0 0 0 + {I|L}PDEKE 4.362 + + 18 + NaN NaN 101571 NaN 2378 1912 4288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4294 30.401 NaN 388830 35 0 69448 0.327 -1 KYLEERAMRQF 11 44 496.25376561158544 1485.7394674349564 3 496.2537536621094 MULTI HCD FTMS 0 0 0 4293 111096.6640625 0.7881099059713111 -1 0.016836166381835938 1 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 7.846045518447754 0.3845105762037768 2 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5572211595193 1191.5572211595193 6.505149978319906 0 0 0 0 0 0 0 0 KY 1.4114 + + 17 + NaN NaN 147080.8 NaN 2379 1913 4293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4295 30.405 NaN 86373 35 0 15302 0.261 -1 HPTDVDYRVM 10 26 624.7877293789655 1247.560905824731 2 624.7876586914062 MULTI HCD FTMS 0 0 0 4293 40598.73046875 0.7422969357724805 1 -0.023456573486328125 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 19.361941925380144 0.3300069447713393 2 HPTD 4 -1 38.928 0 0 3.1203 0 0 0 794.3524874322874 794.3524874322874 31.938200260161125 0 0 0 0 0.5 0 0.5 0 HPTD 3.1203 + + 10 + NaN NaN 103975 NaN 2380 1913 4293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4296 30.409 NaN 111210 35 0 12655 0.263 + 19472 NPTEPDHAI 9 50 497.2354146460935 992.456276358987 2 497.7369384765625 MULTI HCD FTMS 0 0 0 4293 29907.091796875 0.49856536254729517 3 -0.05030250549316406 3 Unmodified _NPTEPDHAI_ ENSG00000158435|ENST00000289382|CNOT11 43.85829265575387 0.04763305254408404 2 NP{[ET]|[MV]}KE 6 5 42.708 0 0 4.3033 0 0 0 291.1090487115844 291.1090487115844 33.75569708000178 0 0 0 0 0.805462187404089 0 0.7742275032520141 0 NP{[ET]|[MV]}KE 4.3033 - 54 + NaN NaN 98590.4 NaN 2381 1913 4293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4297 30.412 NaN 57136 35 0 10925 0.261 -1 TYLEAHRIVKM 11 30 459.58307714566837 1375.7274020372051 3 459.5838317871094 MULTI HCD FTMS 0 0 0 4293 12518.58203125 0.6470998842602875 -3 0.060333251953125 4 Oxidation (M) _TYLEAHRIVKM(Oxidation (M))_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7 2.4347853303010236 0.4082425251555256 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 89606.9 NaN 2382 1913 4293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4298 30.416 NaN 47246 35 0 5936.7 0.261 + -1 WYCMEGSYM 9 29 409.4817588409794 1225.4234471231382 3 409.4817810058594 MULTI HCD FTMS 0 0 0 4293 17061.744140625 0.7105859299217028 -5 0.09379959106445312 5 Carbamidomethyl (C) _WYC(Carbamidomethyl (C))MEGSYM_ REV__ENSG00000205765|ENST00000381647|RIMOC1 1.0714618166137932 0.3428945748894048 2 M 1 -1 20.485 0 0 1.6716 0 0 1076.37307588466 0 1076.37307588466 0 13.494850021680094 0 0 0 0.5 0 0 0 M 1.6716 + + 9 + NaN NaN 102861.7 NaN 2383 1913 4293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4299 30.419 NaN 13378 35 0 3132.4 0.261 + 15197 LNEKRVFQMC 10 14 634.3173217773438 NaN 0 634.3173217773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LNEKRVFQMC_ REV__ENSG00000177479|ENST00000356401|ARIH2;REV__ENST00000452385.5_1_3:48982572-49020700:+|nuORF;REV__ENST00000459976.2_1_3:49002373-49005591:+|nuORF 0.776531954647913 0.3395196853010637 2 T 1 -1 6.9897 0 0 0.55184 0 0 689.84558525215 472.6999910943969 1162.545576346547 0 0 0 0 0 0 0 0 0 T 0.55184 - 1 + NaN NaN 99385.8 NaN 2384 1913 4293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4301 30.424 NaN 155280 35 0 28395 0.327 + 1665 CDEVWAQL 8 40 482.21466345962324 962.4147739860465 2 482.2133483886719 MULTI HCD FTMS 0 0 0 4300 45047.4921875 0.6313515742458075 4 -0.06035804748535156 1 Unmodified _CDEVWAQL_ REV__ENSG00000171798|ENST00000304613|KNDC1 15.847184025352803 0.47719562709667024 2 AQ{I|L} 3 -1 35.49 0 0 3.6876 0 0 632.2221546857437 0 632.2221546857437 0 9.783927154942944 0 0 0 0.8494850021680094 0 0 0.3807196863200844 AQ{I|L} 3.6876 + + 48 NaN NaN 121574.2 NaN 2385 1914 4300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4302 30.429 NaN 25650 35 0 4190.9 0.261 -1 RPVYEGPSM 9 21 526.247408441282 NaN 0 526.2479248046875 PEAK HCD FTMS 0 0 0 4300 7001.19287109375 0.787707689817789 -4 0.08378982543945312 2 Oxidation (M) _RPVYEGPSM(Oxidation (M))_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 5.731851221503515 0.26747109115447115 2 G 1 -1 5.4846 0 0 0.5221 0 0 349.1251136581514 641.3024996393186 990.4276132974701 0 0 0 0 0 0 0 0 0 G 0.5221 + + 2 + NaN NaN 82356.5 NaN 2386 1914 4300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4303 30.432 NaN 9182.2 35 0 4197 0.261 -1 FMCWNMMQV 9 7 603.2359008789062 NaN 0 603.2359008789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _FM(Oxidation (M))CWNMMQV_ ENSG00000183840|ENST00000329321|GPR39 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91879.1 NaN 2387 1914 4300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4305 30.438 NaN 44169 35 0 7835.1 0.327 + 5291 FFFLFFFFF 9 27 436.8878933031844 NaN 0 436.87939453125 PEAK HCD FTMS 0 0 0 4304 1858.8316650390625 0.9241811562814893 1 -0.013416290283203125 1 Unmodified _FFFLFFFFF_ ENST00000358372.8_1_6:160176668-160176878:+|nuORF;ENST00000380956.8_1_6:407613-407766:+|nuORF;ENST00000479872.5_1_1:165877514-165877814:+|nuORF;REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF 1.1933415558491238 0.28946407562688115 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94322 NaN 2388 1915 4304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4306 30.442 NaN 43231 35 0 5326.2 0.261 + 8488 HADQAEIRSL 10 34 570.2938449930249 1138.5731370528497 2 570.2941284179688 MULTI HCD FTMS 0 0 0 4304 19841.609375 0.02134910001649606 -13 0.22579193115234375 2 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 9.5439744041441 0.42184090036563754 2 [HA]D 3 7 14.705 0 0 1.2915 0 0 0 812.4269503229124 812.4269503229124 2.715299873086609 0 0 0 0 0.4247425010840047 0 0 0 + [HA]D 1.2915 + + 4 + NaN NaN 95830.4 NaN 2389 1915 4304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4307 30.446 NaN 15097 35 0 4629.1 0.261 + 23474 RLVKQKDEY 9 14 589.8302661560764 NaN 0 589.8300170898438 PEAK HCD FTMS 0 0 0 4304 4913.666015625 0.7137463286689727 -6 0.12048530578613281 3 Unmodified _RLVKQKDEY_ REV__ENSG00000196535|ENST00000527372|MYO18A;REV__nc|ENSG00000196535|Q92614-2|MYO18A;REV__nc|ENSG00000196535|Q92614-3|MYO18A;REV__nc|ENSG00000196535|Q92614-4|MYO18A;REV__nc|ENSG00000196535|Q92614-5|MYO18A 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92717.1 NaN 2390 1915 4304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4309 30.451 NaN 90178 35 0 7454.2 0.327 + 8044 GGYRDICSL 9 33 492.23498601402474 NaN 0 492.2431945800781 PEAK HCD FTMS 0 0 0 4308 1786.4595947265625 1 0 0 1 Unmodified _GGYRDICSL_ REV__ENST00000470520.5_1_1:1244480-1246298:+|nuORF 6.2057823575117 0.2651744870083793 2 S 1 -1 6.9897 0 0 0.71145 0 0 131.08152395347867 761.3227889195695 892.4043128730482 0 0 0 0 0 0 0 0 0 S 0.71145 + + 1 + NaN NaN 95158.7 NaN 2391 1916 4308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4310 30.456 NaN 46737 35 0 5291.7 0.261 + 3361 EEPTVIKKY 9 24 553.8083527832811 1105.602152633362 2 553.8087158203125 MULTI HCD FTMS 0 0 0 4308 16059.4501953125 0.8320333884417277 1 -0.01680755615234375 2 Unmodified _EEPTVIKKY_ ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF 6.2057823575117 0.30397260197431997 2 K[YK] 3 6 7.4473 0 0 0.67359 0 0 668.3398062972277 0 668.3398062972277 0 2.8431811792050627 0 0 0 0 0 0 0 + K[YK] 0.67359 + + 7 + NaN NaN 86302.3 NaN 2392 1916 4308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4311 30.459 NaN 41749 35 0 6153.5 0.261 + 33051 YDDLTSATY 9 24 524.7256482461023 1047.4367435590045 2 524.7256469726562 MULTI HCD FTMS 0 0 0 4308 3925.131591796875 0.5014248686645102 5 -0.08364486694335938 3 Unmodified _YDDLTSATY_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 1.844237919475145 0.33703635659052655 2 P{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 8 7.4473 0 0 0.711 0 0 638.303242437714 0 638.303242437714 0 7.447274948966937 0 0 0 0 0 0 0 P{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.711 - 4 + NaN NaN 86049.3 NaN 2393 1916 4308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4312 30.463 NaN 33891 35 0 8710.3 0.261 -1 RQMELMDF 8 26 543.2410912920898 NaN 0 543.2409057617188 PEAK HCD FTMS 0 0 0 4308 5839.62158203125 0.9029467459347165 -4 0.067138671875 4 Oxidation (M) _RQM(Oxidation (M))ELMDF_ tr|U7SKJ7|U7SKJ7_FUSNUtRNA-specific2-thiouridylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02054PE=4SV=1 2.577480529830294 0.38822285293237185 2 T 1 -1 4.6041 0 0 0.42455 0 0 736.9444800921889 243.44844995670158 980.3929300488904 0 0 0 0 0 0 0 0 0 T 0.42455 - 1 + NaN NaN 99137.4 NaN 2394 1916 4308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4314 30.468 NaN 91989 35 0 17574 0.327 -1 0 25 585.9273508706017 1754.7602232120048 3 585.9275512695312 MULTI HCD FTMS 0 0 0 4313 32839.10546875 0.3368223766307726 7 -0.11022186279296875 1 NaN NaN 2 NYGGS 5 -1 46.013 0 0 2.6222 0 0 0 1273.5536300160795 1273.5536300160795 46.01342204748164 0 0 0 0 0.4247425010840047 0 0.3807196863200844 0 NYGGS 2.6222 - 16 + NaN NaN 91836.6 NaN 2395 1917 4313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4315 30.473 NaN 21245 35 0 5256.9 0.261 + -1 IVMCLPMMH 9 13 590.254626594449 1178.4947002556978 2 590.255126953125 MULTI HCD FTMS 0 0 0 4313 10454.609375 0.7463208795241458 -4 0.06711006164550781 2 Carbamidomethyl (C),3 Oxidation (M) _IVM(Oxidation (M))C(Carbamidomethyl (C))LPM(Oxidation (M))M(Oxidation (M))H_ REV__ENSG00000107331|ENST00000341511|ABCA2;REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF;REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2;REV__nc|ENSG00000107331|Q9BZC7-4|ABCA2;REV__nc|ENSG00000107331|Q9BZC7|ABCA2 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90085.7 NaN 2396 1917 4313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4316 30.476 NaN 30761 35 0 6295.7 0.261 + 9665 HVEYEWRL 8 14 566.2806366428184 NaN 0 566.2806396484375 PEAK HCD FTMS 0 0 0 4313 5305.21484375 1 0 0 3 Unmodified _HVEYEWRL_ ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102188 NaN 2397 1917 4313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4317 30.479 NaN 12434 35 0 4372.1 0.261 -1 CPVHYNIQN 9 8 572.7642621833675 1143.5139714335348 2 572.7637939453125 MULTI HCD FTMS 0 0 0 4313 5576.54443359375 1 0 0 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))PVHYNIQN_ ENST00000295767.9_1_3:14154259-14154349:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83099.3 NaN 2398 1917 4313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4319 30.485 NaN 973200 35 0 69827 0.327 + 22250 QPADAERAL 9 67 485.7513590313445 969.4881651294891 2 485.7511901855469 MULTI HCD FTMS 0 0 0 4318 641548.1875 0.9765959946778374 1 -0.010158538818359375 1 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 63.960520009940105 0.0120409805053046 2 [QP]ADAERA{I|L} 9 0 + 60.824 0 0 6.2739 6.2739 93.407 0 0 0 27.46462170693448 9.137342758552691 9.137342758552691 44.926069012748606 0 1.0356668758921828 0 1.4604093769761874 0 + + [QP]ADAERA{I|L};{[RE]|[WV]}A{[DA]|[EG]}[QP]A{I|L};{[RE]|[WV]}A{[DA]|[EG]}A[PG]A{I|L};{[RE]|[WV]}A{I|L}ADA[QP];{[DA]|[EG]}A{[RE]|[WV]}[QP]A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}[QP]A{I|L};{[DA]|[EG]}A{[RE]|[WV]}A[PG]A{I|L};{[DA]|[EG]}E{[QV]|[N{I|L}]|[RA]|[KV]}[QP]A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}A[PG]A{I|L};{[DA]|[EG]}E{[QV]|[N{I|L}]|[RA]|[KV]}A[PG]A{I|L} 6.2739;1.6399;1.511;1.2505;1.1414;1.0942;1.0125;0.99064;0.95974;0.86177 +;-;-;-;-;-;-;-;-;- + 511 + NaN NaN 244774.3 NaN 2399 1918 4318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4320 30.489 NaN 59426 35 0 10962 0.261 + 27818 TAYRQEPIA 9 23 524.7747657157548 1047.5349784983096 2 524.774658203125 MULTI HCD FTMS 0 0 0 4318 12242.2578125 0.5032611019700857 -2 0.033512115478515625 2 Unmodified _TAYRQEPIA_ ENSG00000143476|ENST00000366991|DTL 5.731851221503515 0.3075653528928475 2 P{I|L}A 3 6 30.445 0 0 2.9064 0 0 748.3508167951187 0 748.3508167951187 0 19.987737688117235 0 0 0 0.4247425010840047 0 0 0 + P{I|L}A 2.9064 + + 7 NaN NaN 104223.6 NaN 2400 1918 4318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4322 30.495 NaN 403930 35 0 80081 0.327 + 13017 KYISKPENL 9 54 546.3086232000261 1090.602693466852 2 546.3084106445312 MULTI HCD FTMS 0 0 0 4321 292345.40625 0.955864057385441 2 -0.039974212646484375 1 Unmodified _KYISKPENL_ ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF 103.41943736471063 0.004016698775839292 2 KY{I|L}[{I|L}T][TP]QQ 9 5 + 52.566 0 0 4.8199 4.8199 82.642 0 0 0 34.37794022737528 0.3067376201072989 0.3067376201072989 1.3632296880272676 0 0.8807196863200843 0 0.6307196863200843 1.1307196863200843 KY{I|L}[{I|L}T][TP]QQ;KY{I|L}S[PS]{[VA]|[{I|L}G]}{[QV]|[N{I|L}]|[RA]|[KV]};K{I|L}Y[{I|L}T][TP]QQ;K{I|L}YS[PS]{[VA]|[{I|L}G]}{[QV]|[N{I|L}]|[RA]|[KV]};{I|L}KY[{I|L}T][TP]QQ;{I|L}KYS[PS]{[VA]|[{I|L}G]}{[QV]|[N{I|L}]|[RA]|[KV]};K{I|L}[TP]YT{I|L}QQ;{I|L}K[TP]YT{I|L}QQ 4.8199;4.6949;3.6438;3.5188;2.9485;2.8235;1.5876;0.89229 -;-;-;-;-;-;-;- 455 + NaN NaN 157094.5 NaN 2401 1919 4321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4323 30.499 NaN 184000 35 0 19750 0.261 + 18459 MPVRAADKL 9 53 500.78399151757833 999.5534301019567 2 500.7839660644531 MULTI HCD FTMS 0 0 0 4321 97352.3671875 0.391216424059652 -5 0.07051658630371094 2 Unmodified _MPVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 36.506200033944 0.08138327636155518 2 DK{I|L} 3 6 34.935 0 0 3.4951 0 0 625.3382828244622 0 625.3382828244622 0 19.361818737241734 0 0 0 0.8494850021680094 0 0.3252574989159953 0 + DK{I|L} 3.4951 + + 87 NaN NaN 110731.8 NaN 2402 1919 4321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4324 30.503 NaN 98953 35 0 9091.4 0.261 + 9255 HPLSDHEATL 10 33 560.2750703400667 1118.5355877469333 2 560.2750854492188 MULTI HCD FTMS 0 0 0 4321 39965.96484375 0.5162284742649841 14 -0.2118358612060547 3 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 36.12702656103203 0.1790159924230938 2 QAT{I|L} 4 7 35.165 0 0 3.1438 0 0 687.3160267560562 0 687.3160267560562 0 13.738350322034236 0 0 0 0.4247425010840047 0 0.5 0 QAT{I|L} 3.1438 - 20 NaN NaN 97869.5 NaN 2403 1919 4321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4325 30.506 NaN 40004 35 0 5807.1 0.261 + 17818 MGDPHQQTL 9 28 513.7371809479582 1025.4598089627164 2 513.737060546875 MULTI HCD FTMS 0 0 0 4321 19129.109375 0.47624749357602736 5 -0.0833587646484375 4 Unmodified _MGDPHQQTL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 6.2057823575117 0.30397260197431997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100101 NaN 2404 1919 4321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4326 30.509 NaN 48068 35 0 5235.4 0.261 + 9117 HPGLDVDAGQP 11 29 553.2671411611951 1104.5197293891902 2 553.267333984375 MULTI HCD FTMS 0 0 0 4321 8549.8291015625 0.44697142117310085 -12 0.2110004425048828 5 Unmodified _HPGLDVDAGQP_ ENSG00000204498|ENST00000376148|NFKBIL1;nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 93373.8 NaN 2405 1919 4321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4327 30.513 NaN 30617 35 0 4754.2 0.261 + 25795 SLLTVHQRIH 10 28 602.3509389349713 1202.6873249367425 2 602.3515014648438 MULTI HCD FTMS 0 0 0 4321 9602.0322265625 0.4205392853097998 -3 0.043670654296875 6 Unmodified _SLLTVHQRIH_ ENSG00000197608|ENST00000594440|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant 4.897010918128616 0.4493830473644964 2 {[TV]|[{I|L}S]}{I|L}TV 5 5 22.218 0 0 1.8474 0 0 0 686.3471773736936 686.3471773736936 22.21848749616356 0 0 0 0 0 0 0 0 + {[TV]|[{I|L}S]}{I|L}TV 1.8474 + + 6 + NaN NaN 101130.9 NaN 2406 1919 4321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4329 30.518 NaN 118740 35 0 24495 0.327 -1 NADPQAVTM 9 45 481.71613286382154 961.4177127944431 2 481.7161865234375 MULTI HCD FTMS 0 0 0 4328 42235.3125 0.03648899382462799 -85 1.4019126892089844 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 2 AVT{M(Oxidation (M))|F} 4 -1 41.815 0 0 4.3493 0 0 525.22172743965 0 525.22172743965 0 41.81515520348567 0 0 0 1.2887254899964358 0 0 0 AVT{M(Oxidation (M))|F} 4.3493 + + 38 NaN NaN 103567 NaN 2407 1920 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4330 30.523 NaN 52940 35 0 4758.3 0.261 + 4344 EVVSGVVSK 9 34 452.26080672412525 902.5070605150505 2 452.26025390625 MULTI HCD FTMS 0 0 0 4328 13062.8330078125 0.07731280420911249 11 -0.1519451141357422 2 Unmodified _EVVSGVVSK_ ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 7.101721422024254 0.29718071671418667 2 {NN|[MP]|[D{I|L}]|[EV]}VSRV[KS] 8 2 {NN|[MP]|[D{I|L}]|[EV]} + + 22.396 1.338 0.58657 2.4815 2.4815 59.89 0 0 0 0 4.948500216800937 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}VSRV[KS] 2.4815 - 65 + NaN NaN 86339.6 NaN 2408 1920 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4331 30.526 NaN 25366 35 0 4259.8 0.261 + 5147 FFALLYFLV 9 20 566.8266500423301 NaN 0 566.8267211914062 PEAK HCD FTMS 0 0 0 4328 4334.15966796875 1 0 0 3 Unmodified _FFALLYFLV_ REV__ENST00000316902.11_1_14:23652243-23652300:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89343.6 NaN 2409 1920 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4332 30.529 NaN 258720 35 0 91873 0.264 + 28885 TVYNVFFARS 10 44 401.8780548757902 NaN 0 401.8778076171875 PEAK HCD FTMS 0 0 0 4328 1509.763671875 0.3295431558210378 4 -0.06024932861328125 4 Unmodified _TVYNVFFARS_ ENSG00000116830|ENST00000369466|TTF2 3.2813086475875832 0.33737594360511275 2 H 1 10 4.6041 0 0 0.57426 0 0 514.7204824549024 146.93715845279533 661.6576409076977 0 0 0 0 0 0 0 0 0 H 0.57426 - 2 + NaN NaN 123353.6 NaN 2410 1920 4328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4334 30.535 NaN 410360 35 0 98806 0.327 -1 SSGPVDPMM 9 46 476.69108146105754 951.3676099889151 2 476.6910400390625 MULTI HCD FTMS 0 0 0 4333 180147.671875 0.8654263932939997 1 -0.023450851440429688 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 23.232 0 0 2.4419 0 0 427.20616522615444 0 427.20616522615444 0 15.784634594678264 0 0 0 1.305462187404089 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.4419 + + 20 NaN NaN 151458.1 NaN 2411 1921 4333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4335 30.539 NaN 223500 35 0 39455 0.261 -1 KYLEERAMRQF 11 32 496.25376561158544 1485.7394674349564 3 496.2537536621094 MULTI HCD FTMS 0 0 0 4333 65243.04296875 0.4628283746707012 7 -0.08198928833007812 2 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.9275035174196113 0.4104672908605315 2 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5588158878104 1191.5588158878104 9.731975075880328 0 0 0 0 0 0 0 0 KY 1.4114 + + 10 + NaN NaN 132026.4 NaN 2412 1921 4333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4336 30.543 NaN 264430 35 0 24121 0.261 + 9277 HPNDDDVHF 9 53 548.2282163139108 1094.4418796946215 2 548.2280883789062 MULTI HCD FTMS 0 0 0 4333 99366.84375 0.3408738751042806 -10 0.17084693908691406 3 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 79.59630418116434 0.005983006570063981 2 HPNDDDVH{M(Oxidation (M))|F} 9 0 + 61.539 0 0 5.6229 5.6229 89.052 0 0 0 42.075025190615136 10.642492736872597 10.642492736872597 10.886766009197189 0 1.9489700043360187 0 0 0.4247425010840047 + + HPNDDDVH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDDVH{M(Oxidation (M))|F};HPGGDDDVH{M(Oxidation (M))|F};HPNDW[TP][DN];HPNWD[TP][DN];HPGGDW[TP][DN];HPGGWD[TP][DN] 5.6229;4.6281;4.3934;2.4923;1.8315;1.6509;0.99016 +;+;-;-;-;-;- + 203 + NaN NaN 127285.1 NaN 2413 1921 4333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4337 30.546 NaN 89830 35 0 15271 0.263 -1 HPTDVDYRVM 10 44 416.86072972789185 1247.5603597838756 3 416.8603515625 MULTI HCD FTMS 0 0 0 4333 16693.3828125 0.2523084403918235 11 -0.15513229370117188 4 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 28.233623360808718 0.24751404419789966 2 DVWV{M(Oxidation (M))|F} 5 -1 46.938 0 0 3.7624 0 0 583.2777192582881 0 583.2777192582881 0 46.938200260161125 0 0 0 1.3494850021680094 0 0 0 DVWV{M(Oxidation (M))|F} 3.7624 - 41 + NaN NaN 101714.8 NaN 2414 1921 4333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4338 30.55 NaN 35738 35 0 4862.6 0.261 + 9356 HPSHMDIPLDS 11 23 624.7877293789655 1247.560905824731 2 624.7871704101562 MULTI HCD FTMS 0 0 0 4333 21471.73046875 0.3925836977822243 9 -0.11524391174316406 5 Unmodified _HPSHMDIPLDS_ ENSG00000116016|ENST00000263734|EPAS1 5.731851221503515 0.39378271418728467 2 HP 2 9 24.464 0 0 1.9609 0 0 0 1010.4307955377561 1010.4307955377561 24.463950151760656 0 0 0 0 0.5 0 0 0 + HP 1.9609 + + 3 + NaN NaN 94691.6 NaN 2415 1921 4333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4339 30.553 NaN 35812 35 0 7811.2 0.264 + 11721 KCQSDWMERW 10 27 456.8642228958724 NaN 0 456.8645935058594 PEAK HCD FTMS 0 0 0 4333 9859.7939453125 0.7414445407847302 17 -0.2420196533203125 6 Unmodified _KCQSDWMERW_ ENSG00000153214|ENST00000283206|TMEM87B;ENST00000463427.5_1_2:112843607-112863481:+|nuORF;nc|ENSG00000153214|Q96K49-2|TMEM87B 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102442.8 NaN 2416 1921 4333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4341 30.558 NaN 54383 35 0 5532.8 0.326 + 22431 QQAFYNDP 8 23 491.716876137644 981.4191993420881 2 491.7164306640625 MULTI HCD FTMS 0 0 0 4340 17642.2109375 0.7094157522005462 -1 0.023450851440429688 1 Unmodified _QQAFYNDP_ ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 1.844237919475145 0.5392561982033289 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97896.8 NaN 2417 1922 4340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4342 30.563 NaN 63208 35 0 8544.2 0.261 + -1 WYCMEGSYM 9 35 409.4817588409794 1225.4234471231382 3 409.4815673828125 MULTI HCD FTMS 0 0 0 4340 12807.798828125 0.5334180119876016 4 -0.03526115417480469 2 Carbamidomethyl (C) _WYC(Carbamidomethyl (C))MEGSYM_ REV__ENSG00000205765|ENST00000381647|RIMOC1 0.235843874597859 0.3492291811235561 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3 -1 10.458 0 0 0.85338 0 0 0 877.2647916878444 877.2647916878444 10.45757490560675 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 0.85338 - 5 NaN NaN 90826.4 NaN 2418 1922 4340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4344 30.568 NaN 1063800 35 0 142880 0.327 + 8489 HADQAEIRSL 10 70 570.2938449930249 1138.5731370528497 2 570.2938842773438 MULTI HCD FTMS 0 0 0 4343 748456.125 0.8053209983418533 -5 0.08366203308105469 1 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 188.37731734260743 2.030683919541954E-16 2 [HA]DQAE{I|L}RS{I|L} 10 0 + 125.09 0 0 10.987 10.987 90.316 0 0 0 0.9076796513537175 0.9076796513537175 0.9076796513537175 0.9076796513537175 0 3.110924374808178 1.6989700043360187 1.610924374808178 1.3539171939081172 + + [HA]DQAE{I|L}RS{I|L};HADQAE{I|L}RS{I|L};HAD[AG]AE{I|L}RS{I|L};[HA]D[AG]AE{I|L}RS{I|L};[HA]DQAT{I|L}[RD]{I|L};[HA]D[KT][DP]RS{I|L};HADQ[K{I|L}]{NN|[MP]|[D{I|L}]|[EV]}S{I|L};[HA]D[AG]AT{I|L}[RD]{I|L} 10.987;10.907;10.102;9.2609;6.2468;5.7113;5.6525;4.828 +;+;-;-;-;-;-;- + 445 NaN NaN 258470.9 NaN 2419 1923 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4345 30.573 NaN 35034 35 0 11447 0.261 + -1 PHPSNWCR 8 19 527.237548828125 NaN 0 527.237548828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _PHPSNWC(Carbamidomethyl (C))R_ REV__ENST00000307522.3_1_19:46916116-46916440:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91935.7 NaN 2420 1923 4343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4348 30.585 NaN 25185 35 0 3300.3 0.411 -1 0 28 628.6138992598737 1882.819868379821 3 628.6136474609375 MULTI HCD FTMS 0 0 0 4347 5170.33642578125 0.21484444301965747 -7 0.10098648071289062 1 NaN NaN 2 G[HC]{M(Oxidation (M))|F} 4 -1 13.188 0 0 0.70042 0 0 1420.6333113382643 0 1420.6333113382643 0 13.187587626244124 0 0 0 0 0 0 0 G[HC]{M(Oxidation (M))|F} 0.70042 - 3 NaN NaN 91265.3 NaN 2421 1925 4347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4350 30.593 NaN 30696 35 0 4943.9 0.327 -1 0 15 585.9273508706017 1754.7602232120048 3 585.927734375 MULTI HCD FTMS 0 0 0 4349 7042.4755859375 0.07223288607775688 16 -0.285491943359375 1 NaN NaN 2 G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 10.458 0 0 0.59595 0 0 1420.6329538877885 0 1420.6329538877885 0 10.45757490560675 0 0 0 0 0 0 0 G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.59595 - 1 NaN NaN 90791.2 NaN 2422 1926 4349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4351 30.598 NaN 45655 35 0 7137.9 0.261 + 14326 LDPKEELRT 9 31 550.8009739991738 1099.5873950651476 2 550.8005981445312 MULTI HCD FTMS 0 0 0 4349 9504.2119140625 0.25212841140893594 17 -0.31223487854003906 2 Unmodified _LDPKEELRT_ REV__ENSG00000120451|ENST00000265909|SNX19;REV__ENST00000531608.1_1_11:130781387-130786189:-|nuORF;REV__ENST00000533318.5_1_11:130776613-130786189:-|nuORF;REV__nc|ENSG00000120451|Q92543-2|SNX19 4.897010918128616 0.31389406404703984 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93951 NaN 2423 1926 4349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4352 30.601 NaN 32543 35 0 3673.1 0.261 + 7216 FSRCFRDTT 9 32 566.7640557595627 1131.5135585859252 2 566.764404296875 MULTI HCD FTMS 0 0 0 4349 5760.60400390625 0.10145168826606978 -9 0.12554931640625 3 Unmodified _FSRCFRDTT_ ENSG00000119457|ENST00000374228|SLC46A2 1.4819007175156935 0.3397831423917744 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.61773 0 0 493.20101083377523 488.20713220767817 981.4081430414534 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.61773 + + 3 + NaN NaN 95085.2 NaN 2424 1926 4349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4354 30.607 NaN 332800 35 0 25621 0.327 + 22251 QPADAERAL 9 49 485.7513590313445 969.4881651294891 2 485.751220703125 MULTI HCD FTMS 0 0 0 4353 231535.046875 0.35245396029689563 10 -0.15996551513671875 1 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 43.77239144664712 0.04802738721622131 2 [QP]ADAERA{I|L} 9 0 + 54.161 0 0 5.5865 5.5865 92.539 0 0 0 19.920299789533402 9.137342758552691 9.137342758552691 54.160546934575464 0 0.6989700043360187 0 0.805462187404089 0.3252574989159953 + + [QP]ADAERA{I|L} 5.5865 + + 208 + NaN NaN 135698.8 NaN 2425 1927 4353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4355 30.611 NaN 89168 35 0 14923 0.261 -1 RYLEVMRKL 9 38 408.56919078922033 1222.685742967861 3 408.569091796875 MULTI HCD FTMS 0 0 0 4353 22843.041015625 0.5680007230384087 -6 0.07188606262207031 2 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257|PTPA 3.5870582119611467 0.32382448100160255 2 E 1 -1 8.9794 0 0 0.7344 0 0 661.3956766413777 429.22641931705317 1090.622095958431 0 0 0 0 0 0.5 0 0 0 E 0.7344 + + 3 + NaN NaN 95407.1 NaN 2426 1927 4353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4357 30.617 NaN 269070 35 0 32366 0.327 + 18460 MPVRAADKL 9 62 500.78399151757833 999.5534301019567 2 500.78399658203125 MULTI HCD FTMS 0 0 0 4356 189062.765625 0.759760252651952 4 -0.07314300537109375 1 Unmodified _MPVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 51.41523569358685 0.02959097413485123 2 MPVRAADK{I|L} 9 0 + 50.418 0 0 5.0441 5.0441 89.919 0 0 0 17.56507555775584 14.137342758552684 14.137342758552684 20.346588061592282 0 1.7302046884880937 1.2218487496163564 0.3054621874040891 0.3494850021680094 + + MPVRAADK{I|L};[QP][KG]AQMK{I|L};[QP][KQ]QMK{I|L};[QP][KG]AQKM{I|L};[QP][KG]A[AG]MK{I|L};[QP][KQ]QKM{I|L};[QP][KQ][AG]MK{I|L};[QP][KG]AQK{I|L}M;[QP][KQ]QK{I|L}M;[QP][KG]A[AG]KM{I|L} 5.0441;3.0085;2.6616;2.2071;2.0873;1.8602;1.735;1.7298;1.3829;1.2859 +;-;-;-;-;-;-;-;-;- + 151 + NaN NaN 147203.5 NaN 2427 1928 4356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4358 30.621 NaN 41196 35 0 5796.7 0.261 + 27819 TAYRQEPIA 9 27 524.7747657157548 1047.5349784983096 2 524.7749633789062 MULTI HCD FTMS 0 0 0 4356 11763.8564453125 0.4835947297271366 8 -0.129974365234375 2 Unmodified _TAYRQEPIA_ ENSG00000143476|ENST00000366991|DTL 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100140.1 NaN 2428 1928 4356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4359 30.625 NaN 27970 35 0 6180.2 0.261 + 32773 WRQRSEPR 8 14 557.7960404014353 1113.5775278696706 2 557.7960205078125 MULTI HCD FTMS 0 0 0 4356 11330.9228515625 0.47785841981258736 -4 0.038604736328125 3 Unmodified _WRQRSEPR_ REV__nc|ENSG00000186493|Q86SI9-2|IRX2-DT 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84479 NaN 2429 1928 4356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4360 30.628 NaN 27337 35 0 5267.9 0.261 + -1 GQCLMCHC 8 21 533.1908842748642 NaN 0 533.1907348632812 PEAK HCD FTMS 0 0 0 4356 9257.6728515625 0.5136392234698088 143 -2.9923019409179688 4 3 Carbamidomethyl (C) _GQC(Carbamidomethyl (C))LMC(Carbamidomethyl (C))HC(Carbamidomethyl (C))_ REV__ENST00000267406.10_1_14:24897604-24898679:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81108.8 NaN 2430 1928 4356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4361 30.631 NaN 88321 35 0 28640 0.262 -1 0 38 415.8754615572161 1244.6045552718483 3 415.8753662109375 MULTI HCD FTMS 0 0 0 4356 7982.37060546875 0.32681945927705025 -27 0.4150104522705078 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109933 NaN 2431 1928 4356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4362 30.635 NaN 21190 35 0 3634.8 0.261 + -1 LTMDPDNCVV 10 17 590.254626594449 1178.4947002556978 2 590.2542724609375 MULTI HCD FTMS 0 0 0 4356 5115.740234375 0.3651962129035366 7 -0.1198272705078125 6 Carbamidomethyl (C),Oxidation (M) _LTM(Oxidation (M))DPDNC(Carbamidomethyl (C))VV_ REV__ENSG00000148602|ENST00000372105|LRIT1 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107248.3 NaN 2432 1928 4356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4364 30.64 NaN 195940 35 0 20878 0.327 + 2513 DSIVRGNTI 9 53 487.7670567269454 973.5195605206908 2 487.7669372558594 MULTI HCD FTMS 0 0 0 4363 99307.8828125 0.9262170297639749 -3 0.04643440246582031 1 Unmodified _DSIVRGNTI_ ENSG00000128059|ENST00000264220|PPAT;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENST00000496669.1_1_3:87100344-87100812:-|nuORF 27.628801355627647 0.12213550946336599 2 T{I|L} 2 7 20.573 0 0 2.1133 0 0 741.3763034932177 0 741.3763034932177 0 8.182503180159344 0 0 0 0.5 0 0 0 + T{I|L} 2.1133 + + 46 NaN NaN 108265.6 NaN 2433 1929 4363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4365 30.645 NaN 90822 35 0 9734.5 0.261 + 9256 HPLSDHEATL 10 36 560.2750703400667 1118.5355877469333 2 560.27490234375 MULTI HCD FTMS 0 0 0 4363 35188.7109375 0.4545221072389035 24 -0.4561347961425781 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 29.081581746732265 0.240155558137004 2 AT{I|L} 3 7 30.674 0 0 2.7423 0 0 815.3582630841812 0 815.3582630841812 0 9.47621246364342 0 0 0 0.4247425010840047 0 0.5 0 + AT{I|L} 2.7423 + + 10 NaN NaN 97005.3 NaN 2434 1929 4363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4367 30.65 NaN 90350 35 0 24843 0.327 -1 NADPQAVTM 9 24 481.71613286382154 961.4177127944431 2 481.71612548828125 MULTI HCD FTMS 0 0 0 4366 31476.3828125 0.027193868591997253 -75 1.2080612182617188 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 17.44264345198275 0.2096557692338702 2 AVT{M(Oxidation (M))|F} 4 -1 46.186 0 0 4.8039 0 0 525.2160511701187 0 525.2160511701187 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 AVT{M(Oxidation (M))|F} 4.8039 + + 28 NaN NaN 96743.1 NaN 2435 1930 4366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4368 30.654 NaN 140520 35 0 16120 0.261 + 26243 SQDKTDHTL 9 39 522.7512278841235 1043.487902835047 2 522.7509155273438 MULTI HCD FTMS 0 0 0 4366 27975.046875 0.4306761464652454 -5 0.06439018249511719 2 Unmodified _SQDKTDHTL_ REV__ENSG00000100292|ENST00000216117|HMOX1;REV__ENST00000494998.1_1_22:35783088-35786015:+|nuORF 5.731851221503515 0.3075653528928475 2 {[QS]|[NT]}D 3 -1 10.502 0 0 1.0064 0 0 0 710.3475213460476 710.3475213460476 3.51219677964764 0 0 0 0 0.3054621874040891 0 0 0 {[QS]|[NT]}D 1.0064 + + 6 + NaN NaN 102823.6 NaN 2436 1930 4366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4369 30.658 NaN 21613 35 0 4220.9 0.261 + 25796 SLLTVHQRIH 10 21 602.3509389349713 1202.6873249367425 2 602.3508911132812 MULTI HCD FTMS 0 0 0 4366 8830.62890625 0.38675420800997473 8 -0.12677574157714844 3 Unmodified _SLLTVHQRIH_ ENSG00000197608|ENST00000594440|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant 2.735195868890462 0.4608258780945842 2 {[TV]|[{I|L}S]}{I|L}T 4 6 16.198 0 0 1.3468 0 0 0 785.4185274713499 785.4185274713499 9.208187539523749 0 0 0 0 0 0 0 0 + {[TV]|[{I|L}S]}{I|L}T 1.3468 + + 4 + NaN NaN 91070.6 NaN 2437 1930 4366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4370 30.661 NaN 36353 35 0 5147.4 0.261 + -1 PHYLMCLR 8 24 553.2671411611951 1104.5197293891902 2 553.267578125 MULTI HCD FTMS 0 0 0 4366 7633.66357421875 0.39907574946759244 -1 0.010097503662109375 4 Carbamidomethyl (C),Oxidation (M) _PHYLM(Oxidation (M))C(Carbamidomethyl (C))LR_ REV__ENSG00000007923|ENST00000377577|DNAJC11;REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF;REV__ENST00000465911.1_1_1:6730943-6761860:-|nuORF;REV__ENST00000473993.5_1_1:6727844-6761860:-|nuORF;REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF;REV__nc|ENSG00000007923|Q9NVH1-2|DNAJC11;REV__nc|ENSG00000007923|Q9NVH1-3|DNAJC11;REV__NOL9-DNAJC11|1|fusion 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85924.9 NaN 2438 1930 4366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4371 30.665 NaN 33596 35 0 9225.1 0.261 + 8166 GPPGGAWHNM 10 22 512.2278200814574 NaN 0 512.2064819335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _GPPGGAWHNM_ ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2;OSGIN2|p.F143Yfs*31|1|0.06|ENSG00000164823|chr8:89921108-89921109|-/CTACTGGCTGCAGCATCTGAGAT|frameshift_variant;OSGIN2|p.S142Tfs*27|1|0.07|ENSG00000164823|chr8:89921106-89921107|-/ACTATTCT|frameshift_variant 1.4819007175156935 0.33891598740166873 2 A 1 9 6.9897 0 0 0.68363 0 0 365.168639575221 583.2022799127561 948.3709194879771 0 0 0 0 0 0 0 0 0 + A 0.68363 + + 1 + NaN NaN 83946 NaN 2439 1930 4366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4373 30.67 NaN 184370 35 0 46144 0.327 -1 SSGPVDPMM 9 24 476.69094338812386 951.3673338430477 2 476.6910400390625 MULTI HCD FTMS 0 0 0 4372 78609.328125 0.3781949543155107 -8 0.10155105590820312 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.2059056830029 0 427.2059056830029 0 18.455612550363796 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 5 NaN NaN 112986.6 NaN 2440 1931 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4374 30.674 NaN 126380 35 0 19181 0.261 -1 KYLEERAMRQF 11 39 496.25376561158544 1485.7394674349564 3 496.2539978027344 MULTI HCD FTMS 0 0 0 4372 31888.123046875 0.22621152370458247 17 -0.34279441833496094 2 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 2 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5565645150066 1191.5565645150066 10.484550065040281 0 0 0 0 0 0 0 0 KY 1.4114 + + 7 + NaN NaN 98059.7 NaN 2441 1931 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4375 30.678 NaN 87987 35 0 17962 0.261 + 30173 VHAQDTPL 8 27 440.7300163526983 879.4454797721967 2 440.72979736328125 MULTI HCD FTMS 0 0 0 4372 24895.220703125 0.919637748085542 1 -0.020051956176757812 3 Unmodified _VHAQDTPL_ REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF 23.1484247019978 0.4234759064137959 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[C(Carbamidomethyl (C))R][TP]{I|L} 7 -1 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0.5 0 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[C(Carbamidomethyl (C))R][TP]{I|L} 0 - 4 NaN NaN 107807 NaN 2442 1931 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4376 30.681 NaN 66841 35 0 6275.7 0.261 + 28708 TSQFVLSNH 9 37 516.759142070904 1031.5037312086079 2 516.769775390625 MULTI HCD FTMS 0 0 0 4372 8610.0263671875 0.5540487176590045 2 -0.03678131103515625 4 Unmodified _TSQFVLSNH_ REV__ENST00000437099.6_1_17:9818975-9819089:-|nuORF 3.2813086475875832 0.32614229037259 2 {[MG]|[TS]}AE{I|L}E 6 -1 23.901 0 0 2.3171 0 0 0 398.2144869440063 398.2144869440063 4.771212547196626 0 0 0 0 0 0 0 0 {[MG]|[TS]}AE{I|L}E 2.3171 - 25 + NaN NaN 84717.7 NaN 2443 1931 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4377 30.685 NaN 34166 35 0 6412.2 0.261 -1 FGQRCQKCSW 10 18 452.8699333952826 NaN 0 452.8700256347656 PEAK HCD FTMS 0 0 0 4372 20345.771484375 0.9154711914478738 -18 0.2690277099609375 5 2 Carbamidomethyl (C) _FGQRC(Carbamidomethyl (C))QKC(Carbamidomethyl (C))SW_ ENSG00000136514|ENST00000259030|RTP4 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87810.5 NaN 2444 1931 4372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4379 30.69 NaN 595800 35 0 61855 0.327 + 9278 HPNDDDVHF 9 58 548.2282163139108 1094.4418796946215 2 548.2281494140625 MULTI HCD FTMS 0 0 0 4378 257186.234375 0.8822668108031154 1 -0.016729354858398438 1 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 103.41943736471063 0.004016698775839292 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDDVH{M(Oxidation (M))|F} 9 0 + 79.179 0 0 7.2347 7.2347 95.1 0 0 0 11.535211344033769 50.90288749933073 11.535211344033769 44.521208244421075 0 2.6237125054200234 0 2.610924374808178 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDDDVH{M(Oxidation (M))|F};HPNDW[TP][DN];HPNWD[TP][DN];HPGGDW[TP][DN];HPGGWD[TP][DN];[NP]HDW[TP][DN];[NP]HWD[TP][DN] 7.2347;3.1667;3.0537;2.3254;2.2123;0.20064;0.087606 +;-;-;-;-;-;- + 385 NaN NaN 165024.8 NaN 2445 1932 4378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4380 30.695 NaN 54419 35 0 7836.5 0.261 + 22432 QQAFYNDP 8 26 491.716876137644 981.4191993420881 2 491.716552734375 MULTI HCD FTMS 0 0 0 4378 24218.138671875 0.9738421745250907 9 -0.17558670043945312 2 Unmodified _QQAFYNDP_ ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 1.844237919475145 0.5392561982033289 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96614.1 NaN 2446 1932 4378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4381 30.698 NaN 20857 35 0 5320.2 0.261 -1 HPTDVDYRVM 10 15 624.7877293789655 1247.560905824731 2 624.787109375 MULTI HCD FTMS 0 0 0 4378 4988.0322265625 0.09119992163700105 20 -0.39279747009277344 3 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97317.4 NaN 2447 1932 4378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4382 30.701 NaN 26888 35 0 7082 0.261 -1 EWWQSPCQC 9 12 640.7462952975482 1279.4780376618962 2 640.7459106445312 MULTI HCD FTMS 0 0 0 4378 12278.974609375 0.7120249526729384 -4 0.07314300537109375 4 2 Carbamidomethyl (C) _EWWQSPC(Carbamidomethyl (C))QC(Carbamidomethyl (C))_ ENST00000378566.5_1_9:35108611-35115799:-|nuORF 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88667.4 NaN 2448 1932 4378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4384 30.707 NaN 724640 35 0 93588 0.327 + 8490 HADQAEIRSL 10 58 570.2938449930249 1138.5731370528497 2 570.2938232421875 MULTI HCD FTMS 0 0 0 4383 515423.5 0.554583433449559 5 -0.07015800476074219 1 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 157.4881802720041 2.0905164149367524E-08 2 [HA]DQAE{I|L}RS{I|L} 10 0 + 122.51 0 0 10.76 10.76 96.46 0 0 0 18.957713472593397 103.28229297832328 18.957713472593397 13.979400086720375 0 2.8494850021680094 1.6989700043360187 2.2689301784845295 0.6989700043360187 + + [HA]DQAE{I|L}RS{I|L};[HA]ENAE{I|L}RS{I|L};[HA]D[AG]AE{I|L}RS{I|L};[HA]EGGAE{I|L}RS{I|L};[HA]DQAT{I|L}[RD]{I|L};[HA]D[KT][DP]RS{I|L};[HA]D[AG]AT{I|L}[RD]{I|L};[HA]ENAT{I|L}[RD]{I|L};[HA]E[KS][DP]RS{I|L};[HA]EGGAT{I|L}[RD]{I|L} 10.76;9.532;9.341;8.1132;6.2994;5.5865;5.1875;5.0716;4.3587;3.9597 +;-;-;-;-;-;-;-;-;- + 440 NaN NaN 197222.3 NaN 2449 1933 4383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4385 30.711 NaN 42612 35 0 9373.9 0.261 -1 PLQPVNENM 9 21 529.252754007085 1056.4909550809698 2 529.2525634765625 MULTI HCD FTMS 0 0 0 4383 10879.828125 0.40872112019132106 -6 0.0999755859375 2 Oxidation (M) _PLQPVNENM(Oxidation (M))_ ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.9389 0 0 891.4447494919058 0 891.4447494919058 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.9389 + + 1 + NaN NaN 95275 NaN 2450 1933 4383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4387 30.717 NaN 123790 35 0 26260 0.327 + 9680 HVPEVEVQVKR 11 50 440.5859738909553 1318.7360922730659 3 440.5858154296875 MULTI HCD FTMS 0 0 0 4386 27250.642578125 0.6530966781230504 1 -0.019847869873046875 1 Unmodified _HVPEVEVQVKR_ ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF;ENST00000553597.5_1_15:25166388-25213181:+|nuORF 19.986897341741983 0.28293591992651296 2 V 1 10 9.6041 0 0 0.72828 0 0 690.3348318484383 526.3102511041624 1216.6450829526007 0 0 0 0 0 0.5 0 0 0 + V 0.72828 + + 18 + NaN NaN 102855 NaN 2451 1934 4386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4388 30.721 NaN 42632 35 0 5155.2 0.261 -1 0 20 628.6138992598737 1882.819868379821 3 628.6135864257812 MULTI HCD FTMS 0 0 0 4386 12125.45703125 0.5038525248082015 2 -0.029994964599609375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112371.3 NaN 2452 1934 4386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4389 30.725 NaN 129970 35 0 26562 0.262 + 9384 HPTDVDYRV 9 41 551.2698853007951 1100.52521766839 2 551.2696533203125 MULTI HCD FTMS 0 0 0 4386 35721.32421875 0.12025704063174687 -7 0.11008262634277344 3 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 26.268140514670165 0.13340543277302316 2 HPTD 4 5 38.8 0 0 3.5256 0 0 0 647.3160494440061 647.3160494440061 38.80001899740286 0 0 0 0 0.5 0 0.4247425010840047 0 + HPTD 3.5256 + + 7 + NaN NaN 106611.1 NaN 2453 1934 4386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4390 30.728 NaN 34652 35 0 6522 0.261 + 7085 FRCPYYFI 8 20 554.7672419983243 NaN 0 554.7853393554688 PEAK HCD FTMS 0 0 0 4386 4797.22119140625 0.7890871120146549 7 -0.14875030517578125 4 Unmodified _FRCPYYFI_ ENST00000505513.1_1_4:25146420-25156786:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93133.7 NaN 2454 1934 4386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4391 30.731 NaN 27512 35 0 8586.3 0.261 + 31111 VTLLLGLLLP 10 17 526.3611160978146 NaN 0 526.3609619140625 PEAK HCD FTMS 0 0 0 4386 5228.7373046875 0.9403577809551024 7 -0.14875030517578125 5 Unmodified _VTLLLGLLLP_ ENSG00000213398|ENST00000264005|LCAT;ENST00000316341.7_1_16:67977830-67978124:-|nuORF 0 0.34018428902965525 2 P 1 9 6.9897 0 0 0.66524 0 0 675.9488729653573 274.68573938541255 950.6346123507699 0 0 0 0 0 0 0 0 0 + P 0.66524 + + 1 + NaN NaN 102984.3 NaN 2455 1934 4386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4393 30.737 NaN 75379 35 0 12525 0.327 + 7408 FVNDDRHVM 9 16 566.7640557595627 1131.5135585859252 2 566.7639770507812 MULTI HCD FTMS 0 0 0 4392 56781.74609375 1 0 0 1 Unmodified _FVNDDRHVM_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 11.494710602746466 0.2610445893512368 2 VM 2 7 20.969 0 0 1.8532 0 0 883.3926703104418 0 883.3926703104418 0 15.484550065040281 0 0 0 0 0 0 0 + VM 1.8532 + + 3 NaN NaN 93512.6 NaN 2456 1935 4392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4394 30.741 NaN 91582 35 0 9260.4 0.263 + 24 AAGVGDMVM 9 36 441.6883077327083 881.3620625322167 2 441.6883850097656 MULTI HCD FTMS 0 0 0 4392 43200.55859375 0.3430589499005535 -9 0.14310455322265625 2 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 42.09456458481378 0.05572955244001856 2 AAGV[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 40.569 0 0 4.6029 4.6029 87.358 0 0 0 21.36046240493748 14.795251059025478 14.795251059025478 10.268024924119668 0 1.4247425010840047 0 0 0 + + AAGV[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGV[DC]TV{M(Oxidation (M))|F} 4.6029;3.4379 +;- + 114 + NaN NaN 108850.9 NaN 2457 1935 4392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4396 30.747 NaN 58194 35 0 8324.7 0.327 + 18461 MPVRAADKL 9 23 500.78399151757833 999.5534301019567 2 500.7839660644531 MULTI HCD FTMS 0 0 0 4395 50787.7109375 0.20409351342095763 12 -0.2659111022949219 1 Unmodified _MPVRAADKL_ ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF 12.240655878213236 0.2545997876781172 2 DK{I|L} 3 6 28.188 0 0 2.82 0 0 625.334276267775 0 625.334276267775 0 11.989700043360187 0 0 0 0.5 0 0 0 + DK{I|L} 2.82 + + 6 NaN NaN 95181.8 NaN 2458 1936 4395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4397 30.751 NaN 77468 35 0 11641 0.262 -1 LRPPPTKLAAC 11 28 408.56919078922033 1222.685742967861 3 408.56915283203125 MULTI HCD FTMS 0 0 0 4395 23696.521484375 0.5892228327836726 3 -0.06876564025878906 2 Carbamidomethyl (C) _LRPPPTKLAAC(Carbamidomethyl (C))_ ENSG00000126705|ENST00000673934|AHDC1 2.4347853303010236 0.4082425251555256 2 D 1 -1 5.4846 0 0 0.44857 0 0 699.8842425789923 404.76410852603755 1104.6483511050299 0 0 0 0 0 0 0 0 0 D 0.44857 - 4 + NaN NaN 90871.7 NaN 2459 1936 4395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4398 30.755 NaN 30787 35 0 6830.3 0.261 + -1 IMHQAMVLR 9 12 557.7960404014353 1113.5775278696706 2 557.796142578125 MULTI HCD FTMS 0 0 0 4395 20194.1640625 0.8516474302013001 4 -0.07893180847167969 3 Oxidation (M) _IM(Oxidation (M))HQAMVLR_ REV__BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;REV__ENSG00000204463|ENST00000676615|BAG6;REV__nc|ENSG00000204463|P46379-2|BAG6;REV__nc|ENSG00000204463|P46379-4|BAG6;REV__nc|ENSG00000204463|P46379-5|BAG6;REV__nc|ENSG00000204463|P46379|BAG6 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91415.6 NaN 2460 1936 4395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4399 30.758 NaN 20586 35 0 5648.3 0.263 + -1 MQIQNEDMESK 11 16 456.8642228958724 NaN 0 456.8643798828125 PEAK HCD FTMS 0 0 0 4395 4052.631591796875 0.30475297822811537 32 -0.6462726593017578 4 Oxidation (M) _MQIQNEDM(Oxidation (M))ESK_ REV__ENSG00000166569|ENST00000299721|CPLX4 0.5059551277355931 0.3406848944787997 2 M 1 -1 3.4949 0 0 0.38333 0 0 343.4780052626448 434.1814058893188 777.6594111519636 0 0 0 0 0 0 0 0 0 M 0.38333 + + 1 + NaN NaN 90518.5 NaN 2461 1936 4395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4400 30.761 NaN 19600 35 0 2882.6 0.261 -1 0 18 585.9273508706017 1754.7602232120048 3 586.2608642578125 MULTI HCD FTMS 0 0 0 4395 4306.56787109375 0.04417137448655168 26 -0.5126571655273438 5 NaN NaN 2 G 1 -1 6.9897 0 0 0.39833 0 0 1375.8245980672766 318.8848971002563 1694.7094951675329 0 0 0 0 0 0 0 0 0 G 0.39833 - 1 + NaN NaN 95581.9 NaN 2462 1936 4395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4402 30.767 NaN 75972 35 0 6315.8 0.327 + 22252 QPADAERAL 9 30 485.7513590313445 969.4881651294891 2 485.751220703125 MULTI HCD FTMS 0 0 0 4401 47507.5 0.07231823754027418 20 -0.3927936553955078 1 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 14.405379775768559 0.2358970535022398 2 [QP]ADAE 6 3 25.406 0 0 2.6206 0 0 0 355.20978723697505 355.20978723697505 3.4678748622465605 0 0 0 0 0 0 0 0 + [QP]ADAE 2.6206 + + 36 + NaN NaN 107310.6 NaN 2463 1937 4401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4403 30.771 NaN 44548 35 0 9115.8 0.261 + 621 APGLLSNRHG 10 21 511.282779522795 1020.55100611239 2 511.2524719238281 MULTI HCD FTMS 0 0 0 4401 3731.236083984375 0.8178620623224004 -3 0.04988288879394531 2 Unmodified _APGLLSNRHG_ REV__ENSG00000010327|ENST00000321725|STAB1 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100196.7 NaN 2464 1937 4401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4405 30.777 NaN 140150 35 0 17220 0.327 + 22529 QSDPRAEEL 9 43 522.7512278841235 1043.487902835047 2 522.7515258789062 MULTI HCD FTMS 0 0 0 4404 40316.8984375 0.6206790835446339 3 -0.0886993408203125 1 Unmodified _QSDPRAEEL_ ENSG00000166135|ENST00000299163|HIF1AN 10.073929032068715 0.27331982688540024 2 EE 2 7 10.969 0 0 1.0512 0 0 148.12384953592715 634.2602022760374 782.3840518119646 0 0 0 0 0 0 0 0 0 + EE 1.0512 + + 12 + NaN NaN 124741.4 NaN 2465 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4406 30.781 NaN 95686 35 0 10262 0.261 + 21798 QAKREETI 8 46 487.7670567269454 973.5195605206908 2 487.7668151855469 MULTI HCD FTMS 0 0 0 4404 45360.546875 0.42306521703173133 6 -0.15231704711914062 2 Unmodified _QAKREETI_ ENST00000264434.6_1_2:70410049-70418182:-|nuORF 20.453626601364224 0.4433031943603284 2 T{I|L} 2 6 19.821 0 0 2.036 0 0 741.3759632794937 0 741.3759632794937 0 14.336068845642203 0 0 0 0.4247425010840047 0 0 0 + T{I|L} 2.036 + + 21 NaN NaN 97672.2 NaN 2466 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4407 30.785 NaN 91709 35 0 28342 0.261 -1 NADPQAVTM 9 22 481.71613286382154 961.4177127944431 2 481.71588134765625 MULTI HCD FTMS 0 0 0 4404 39949.2109375 0.03451392744394157 -67 1.0522632598876953 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 17.44264345198275 0.2096557692338702 2 AVT{M(Oxidation (M))|F} 4 -1 46.938 0 0 4.8822 0 0 525.2176380841812 0 525.2176380841812 0 46.938200260161125 0 0 0 1.5 0 0 0 AVT{M(Oxidation (M))|F} 4.8822 + + 27 NaN NaN 104213.9 NaN 2467 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4408 30.788 NaN 125480 35 0 15435 0.261 + 19593 NTIDQKIVER 10 47 405.8947057463411 1214.6622878392234 3 405.8945617675781 MULTI HCD FTMS 0 0 0 4404 39126.765625 0.752548941648083 -2 0.030055999755859375 4 Unmodified _NTIDQKIVER_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 17.571907917122694 0.346750318923987 2 {[QS]|[NT]}{I|L}D[KQ][{I|L}V]{[RE]|[WV]} 10 0 + 25.475 0 0 2.0973 2.0973 87.762 0 0 0 25.474921663574293 1.974987195809419 1.974987195809419 25.474921663574293 0 0.7302046884880937 0 0 0.4247425010840047 + + {[QS]|[NT]}{I|L}D[KQ][{I|L}V]{[RE]|[WV]} 2.0973 + + 16 + NaN NaN 111106.3 NaN 2468 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4409 30.791 NaN 74604 35 0 8888.4 0.261 + 9257 HPLSDHEATL 10 28 560.2750703400667 1118.5355877469333 2 560.27490234375 MULTI HCD FTMS 0 0 0 4404 35550.9921875 0.4592015863325143 33 -0.6796474456787109 5 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 10.073929032068715 0.4168838835836452 2 H{I|L}A 3 7 23.188 0 0 2.073 0 0 0 794.3234498176237 794.3234498176237 1.9897000433601875 0 0 0 0 0 0 0 0 H{I|L}A 2.073 - 15 + NaN NaN 92582.1 NaN 2469 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4410 30.797 NaN 29801 35 0 5751.2 0.261 + 14931 LLEKIKKMKV 10 17 615.4036989725663 NaN 0 615.4038696289062 PEAK HCD FTMS 0 0 0 4404 11632.044921875 0.7138755409633197 59 -1.23175048828125 6 Unmodified _LLEKIKKMKV_ REV__ENSG00000273559|ENST00000614790|CWC25 1.4819007175156935 0.33891598740166873 2 Q 1 -1 5.4846 0 0 0.44634 0 0 858.9646722597826 238.75570093326408 1097.7203731930467 0 0 0 0 0 0 0 0 0 Q 0.44634 - 2 + NaN NaN 100070 NaN 2470 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4411 30.8 NaN 29225 35 0 6681.9 0.261 + 23247 RGKLHYRR 8 22 543.3248176221814 1084.6350823111627 2 543.32470703125 MULTI HCD FTMS 0 0 0 4404 13414.619140625 0.9611159509311055 -1 0.010168075561523438 7 Unmodified _RGKLHYRR_ ENST00000534268.5_1_15:79237012-79237186:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81880.2 NaN 2471 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4412 30.804 NaN 14517 35 0 2863.3 0.261 -1 LWNIFMMFC 9 15 618.7661743164062 NaN 0 618.7661743164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Oxidation (M) _LWNIFM(Oxidation (M))M(Oxidation (M))FC_ ENSG00000214046|ENST00000487416|SMIM7;ENST00000461364.1_1_19:16764844-16770945:-|nuORF;ENST00000463051.5_1_19:16758059-16766076:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92759 NaN 2472 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4413 30.807 NaN 34882 35 0 5930.3 0.263 + 11836 KEQGSVYF 8 29 479.23537789940355 NaN 0 479.2355651855469 PEAK HCD FTMS 0 0 0 4404 2309.517578125 0.4496435281604958 4 -0.10218429565429688 9 Unmodified _KEQGSVYF_ ENST00000597277.1_9:43426178-43426727:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93180.4 NaN 2473 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4414 30.81 NaN 10505 35 0 3348.9 0.261 -1 FFWCACCLM 9 10 648.2373046875 NaN 0 648.2373046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))FFWC(Carbamidomethyl (C))AC(Carbamidomethyl (C))CLM(Oxidation (M))_ ENSG00000123843|ENST00000367078|C4BPB;ENST00000492730.1_1_1:207262876-207265203:+|nuORF;nc|ENSG00000123843|P20851-2|C4BPB 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82292 NaN 2474 1938 4404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4416 30.816 NaN 193750 35 0 42985 0.327 + -1 LMDAQSPKRF 10 31 403.54147481507385 1207.6025950454216 3 403.54144287109375 MULTI HCD FTMS 0 0 0 4415 24717.23046875 0.7550664637758222 -1 0.03870964050292969 1 Oxidation (M) _LM(Oxidation (M))DAQSPKRF_ REV__ENSG00000136541|ENST00000410096|ERMN;REV__nc|ENSG00000136541|Q8TAM6-2|ERMN 1.9063754702782614 0.46521295622613185 2 PD 2 -1 10.969 0 0 0.90834 0 0 164.0675300901051 828.4322752537471 992.4998053438521 0 0 0 0 0 0 0 0 0 PD 0.90834 - 6 + NaN NaN 128186 NaN 2475 1939 4415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4417 30.82 NaN 37395 35 0 7907.8 0.261 + 15082 LMAVYLWR 8 21 526.2929638166082 1050.5713747000163 2 526.2929077148438 MULTI HCD FTMS 0 0 0 4415 6417.30224609375 0.8284322333950603 1 -0.010166168212890625 2 Unmodified _LMAVYLWR_ REV__ENSG00000053900|ENST00000315368|ANAPC4;REV__ENST00000505842.5_1_4:25404608-25415394:+|nuORF;REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4;REV__nc|ENSG00000053900|Q9UJX5-3|ANAPC4 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94621.9 NaN 2476 1939 4415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4419 30.826 NaN 386730 35 0 111910 0.326 -1 SSGPVDPMM 9 28 476.69094338812386 951.3673338430477 2 476.6910095214844 MULTI HCD FTMS 0 0 0 4418 179159.578125 0.8619492123940672 1 -0.03982353210449219 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 27.435 0 0 2.8837 0 0 427.20611495782015 0 427.20611495782015 0 25.216525140920606 0 0 0 1.4247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.8837 + + 8 NaN NaN 145520 NaN 2477 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4420 30.83 NaN 401020 35 0 37890 0.261 + 9279 HPNDDDVHF 9 54 548.2282163139108 1094.4418796946215 2 548.2281494140625 MULTI HCD FTMS 0 0 0 4418 195633.53125 0.6711127915595274 9 -0.20032310485839844 2 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 79.59630418116434 0.005983006570063981 2 VDDDNSE 7 6 58.453 0 0 5.3409 0 0 302.1373768537125 0 302.1373768537125 0 21.414412723804546 0 0 0 1.7302046884880937 0 0.5 0.4247425010840047 VDDDNSE 5.3409 - 376 NaN NaN 148351.6 NaN 2478 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4421 30.834 NaN 252330 35 0 32118 0.261 + 8491 HADQAEIRSL 10 44 570.2938449930249 1138.5731370528497 2 570.2938232421875 MULTI HCD FTMS 0 0 0 4418 168977.140625 0.18181538641971398 12 -0.2570343017578125 3 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 72.27630555110993 0.014888116951842497 2 [HA]DQAE{I|L}RS{I|L} 10 0 + 93.855 0 0 8.2432 8.2432 91.576 0 0 0 0.8146959603921289 85.78254117496506 0.8146959603921289 9.164539485499247 0 2.8494850021680094 1.3979400086720375 0.8807196863200843 0 + + [HA]DQAE{I|L}RS{I|L};[HA]D[AG]AE{I|L}RS{I|L} 8.2432;7.4383 +;- + 117 NaN NaN 128054.1 NaN 2479 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4422 30.837 NaN 162580 35 0 33331 0.264 + 23133 RFEEKHAYF 9 54 409.5365808534211 1225.5879131604634 3 409.5365295410156 MULTI HCD FTMS 0 0 0 4418 43131.8515625 0.20462138862629609 -7 0.1190338134765625 4 Unmodified _RFEEKHAYF_ ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 16.565877749689598 0.21723083036893404 2 Y{M(Oxidation (M))|F} 2 7 29.776 0 0 2.4296 0 0 897.4451216521232 0 897.4451216521232 0 20.823872065994564 0 0 0 0.8807196863200843 0 0 0 + Y{M(Oxidation (M))|F} 2.4296 + + 13 NaN NaN 112835.1 NaN 2480 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4423 30.84 NaN 93321 35 0 22464 0.261 -1 KYLEERAMRQF 11 34 496.25376561158544 1485.7394674349564 3 496.2542419433594 MULTI HCD FTMS 0 0 0 4418 10043.7001953125 0.07124912060436579 26 -0.5372505187988281 5 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 2 KY 2 -1 20.969 0 0 1.4114 0 0 0 1191.5579665853963 1191.5579665853963 20.969100130080562 0 0 0 0 0 0 0 0 KY 1.4114 + + 1 + NaN NaN 110804.7 NaN 2481 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4424 30.844 NaN 78328 35 0 22647 0.262 + 12688 KWLREETFH 9 30 415.8854117165898 1244.6344057499693 3 415.8752746582031 MULTI HCD FTMS 0 0 0 4418 5890.41650390625 0.6849431182980196 -1 0.010166168212890625 6 Unmodified _KWLREETFH_ REV__ENSG00000163491|ENST00000691995|NEK10;REV__ENST00000574215.5_1_3:27203940-27332977:-|nuORF;REV__nc|ENSG00000163491|Q6ZWH5-2|NEK10;REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10;REV__nc|ENSG00000163491|Q6ZWH5|NEK10 2.0597508629832335 0.3354026079994024 2 T 1 -1 1.1092 0 0 0.089122 0 0 841.44603402321 299.11423669986567 1140.5602707230757 0 0 0 0 0 0 0 0 0 T 0.089122 + + 5 + NaN NaN 99401.4 NaN 2482 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4425 30.847 NaN 43566 35 0 5405.2 0.261 + 5781 FPASHDPDP 9 23 491.716876137644 981.4191993420881 2 491.7171936035156 MULTI HCD FTMS 0 0 0 4418 24436.537109375 0.9826242536175223 17 -0.33374977111816406 7 Unmodified _FPASHDPDP_ ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83701.9 NaN 2483 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4426 30.85 NaN 21298 35 0 4753 0.261 -1 MSRRGWPLF 9 17 604.3066901438499 1206.5988273544997 2 604.3057250976562 MULTI HCD FTMS 0 0 0 4418 10318.0234375 0.7925349567602072 -3 0.05904388427734375 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))SRRGWPLF_ ENST00000428643.1_1_9:131425437-131425533:-|nuORF 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.4081 0 0 1041.5186251834043 0 1041.5186251834043 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4081 + + 2 + NaN NaN 87699.4 NaN 2484 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4427 30.854 NaN 66041 35 0 11360 0.262 -1 SAAAVDAGMAM 11 27 513.715169452032 1025.415785970864 2 513.715087890625 MULTI HCD FTMS 0 0 0 4418 15494.4892578125 0.21343132981971874 -14 0.23218345642089844 9 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 8.745405648335112 0.3805662881914433 2 {[NV]|[RG]}VSWKV 7 -1 45.221 0 0 4.41 0 0 0 209.94194498869516 209.94194498869516 45.221157291141836 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {[NV]|[RG]}VSWKV 4.41 - 39 NaN NaN 92590.9 NaN 2485 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4428 30.857 NaN 17740 35 0 5113 0.261 -1 MDMCFIICTM 10 14 640.7462952975482 1279.4780376618962 2 640.7450561523438 MULTI HCD FTMS 0 0 0 4418 5554.81396484375 0.32210883043972405 4 -0.10344123840332031 10 Carbamidomethyl (C),Oxidation (M) _MDMC(Carbamidomethyl (C))FIICTM(Oxidation (M))_ ENSG00000174429|ENST00000311955|ABRA 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96808.9 NaN 2486 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4429 30.86 NaN 15856 35 0 4129.1 0.261 -1 0 17 628.6138992598737 1882.819868379821 3 628.9496459960938 MULTI HCD FTMS 0 0 0 4418 2013.4559326171875 0.1342492043807179 7 -0.15695762634277344 11 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102248.8 NaN 2487 1940 4418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4431 30.866 NaN 54285 35 0 14277 0.327 -1 SIRSGYEVM 9 29 529.252754007085 1056.4909550809698 2 529.2525024414062 MULTI HCD FTMS 0 0 0 4430 22218.20703125 0.8346685592935491 2 -0.04022789001464844 1 Oxidation (M) _SIRSGYEVM(Oxidation (M))_ ENSG00000135404|ENST00000257857|CD63;nc|ENSG00000135404|P08962-2|CD63;nc|ENSG00000135404|P08962-3|CD63 9.38312468134398 0.279288223203164 2 EV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.4262 0 0 663.3316517560562 0 663.3316517560562 0 36.197887582883936 0 0 0 1 0 0 0 EV{M(Oxidation (M))|F} 3.4262 + + 7 NaN NaN 94764.5 NaN 2488 1941 4430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4432 30.87 NaN 54569 35 0 5774.4 0.261 -1 0 34 487.68240970677226 973.3502664803445 2 487.68231201171875 MULTI HCD FTMS 0 0 0 4430 17161.498046875 0.8076558055902214 2 -0.04022789001464844 2 NaN NaN 2 T 1 -1 10.485 0 0 1.0772 0 0 147.94909568131953 721.3274630182249 869.2765586995445 0 0 0 0 0 0 0 0.3494850021680094 0 T 1.0772 - 4 + NaN NaN 94468.6 NaN 2489 1941 4430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4433 30.874 NaN 48474 35 0 7280.3 0.261 + 26318 SSADPSGAFR 10 24 497.7331496658878 NaN 0 497.73291015625 PEAK HCD FTMS 0 0 0 4430 7299.6142578125 0.5156349066138404 1 -0.013484954833984375 3 Unmodified _SSADPSGAFR_ ENSG00000196878|ENST00000356082|LAMB3 7.101721422024254 0.3341061997659158 2 AD 2 8 19.464 0 0 1.9592 0 0 174.06351505267565 630.2994641801749 804.3629792328506 0 0 0 0 0 0.8494850021680094 0 0 0 + AD 1.9592 + + 4 + NaN NaN 107519.5 NaN 2490 1941 4430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4435 30.879 NaN 643860 35 0 152340 0.327 + 9385 HPTDVDYRV 9 46 551.2698853007951 1100.52521766839 2 551.2698364257812 MULTI HCD FTMS 0 0 0 4434 277778.09375 0.9351493047161139 1 -0.026742935180664062 1 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 49.55428908609986 0.03219431099695407 2 HPTD[DV]V[YR] 9 2 + 57.668 0 0 5.24 5.24 92.088 0 0 0 52.18310920309804 7.147642715192504 7.147642715192504 57.66765926813832 0 1.25 0 0.805462187404089 0 HPTD[DV]V[YR] 5.24 - 74 + NaN NaN 186580.4 NaN 2491 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4436 30.884 NaN 190600 35 0 58748 0.261 + 18867 NAEPEPRSL 9 40 506.7565403822393 1011.4985278312786 2 506.7565612792969 MULTI HCD FTMS 0 0 0 4434 60969.7578125 0.07735739493148136 -6 0.13224029541015625 2 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 16.149105407346934 0.22083165093524068 2 {[QG]|[NA]}E 3 6 27.76 0 0 2.7444 0 0 0 694.3534750301129 694.3534750301129 20.769921747127498 0 0 0 0 1 0 0.3054621874040891 0.4247425010840047 + {[QG]|[NA]}E 2.7444 + + 13 NaN NaN 113380.9 NaN 2492 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4437 30.887 NaN 63775 35 0 6173.9 0.261 -1 LMFVLVVCI 9 30 526.7965064029421 NaN 0 526.8082885742188 PEAK HCD FTMS 0 0 0 4434 3200.5458984375 1 0 0 3 Oxidation (M) _LM(Oxidation (M))FVLVVCI_ ENSG00000154263|ENST00000690296|ABCA10;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;nc|ENSG00000154263|Q8WWZ4-2|ABCA10 5.230669730166228 0.26989974671959066 2 TA 2 -1 14.464 0 0 1.3755 0 0 232.11948878069035 644.3512667291624 876.4707555098528 0 0 0 0 0 0 0 0.5 0 TA 1.3755 - 8 + NaN NaN 111395.7 NaN 2493 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4438 30.89 NaN 62492 35 0 5002.6 0.261 + 31583 VYIEKNDKL 9 40 561.3139618617744 1120.6133707903487 2 561.3135375976562 MULTI HCD FTMS 0 0 0 4434 22760.90234375 1 0 0 4 Unmodified _VYIEKNDKL_ ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3 26.268140514670165 0.13340543277302316 2 [YV]{I|L}E 4 5 43.544 0 0 3.8858 0 0 0 613.3328341119749 613.3328341119749 38.05970632012567 0 0 0 0 0.7742275032520141 2 0.5 0 + [YV]{I|L}E 3.8858 + + 22 + NaN NaN 99437.8 NaN 2494 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4439 30.894 NaN 29753 35 0 6864.5 0.261 + -1 MLMHIVLQ 8 19 500.7699913738818 NaN 0 500.7841796875 PEAK HCD FTMS 0 0 0 4434 2118.461181640625 0.9253801967618155 -1 0.013484954833984375 5 Oxidation (M) _MLM(Oxidation (M))HIVLQ_ REV__ENST00000327134.7_1_3:196534677-196534731:+|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87446 NaN 2495 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4440 30.897 NaN 13313 35 0 5801.5 0.261 -1 0 11 639.2953517411374 1276.5761505490748 2 639.2953491210938 MULTI HCD FTMS 0 0 0 4434 3415.87255859375 0.13150160368749247 -13 0.2390575408935547 6 NaN NaN 2 A 1 -1 5.4846 0 0 0.42963 0 0 994.3183818496592 208.1912020318969 1202.5095838815562 0 0 0 0 0 0 0 0 0 A 0.42963 - 2 + NaN NaN 89890.9 NaN 2496 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4441 30.9 NaN 16569 35 0 3765.5 0.261 + 28328 TNFKGRTLLE 10 15 589.8301098182401 NaN 0 589.8306274414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TNFKGRTLLE_ REV__ENSG00000156515|ENST00000359426|HK1;REV__ENST00000494253.1_1_10:71098016-71144300:+|nuORF;REV__nc|ENSG00000156515|P19367-2|HK1;REV__nc|ENSG00000156515|P19367-3|HK1;REV__nc|ENSG00000156515|P19367-4|HK1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94956 NaN 2497 1942 4434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4443 30.906 NaN 37289 35 0 4204.7 0.327 + 25781 SLHVGGSNLS 10 32 485.7513590313445 969.4881651294891 2 485.7514953613281 MULTI HCD FTMS 0 0 0 4442 22721.927734375 0.03458842850639321 26 -0.5072956085205078 1 Unmodified _SLHVGGSNLS_ ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1 3.2813086475875832 0.45793521633868084 2 [QP]W 3 10 10.458 0 0 1.0787 0 0 0 555.2898653619749 555.2898653619749 -3.6991128507179365 0 -3.6991128507179365 0 0 0 0 0 0 [QP]W 1.0787 - 22 + NaN NaN 88410.6 NaN 2498 1943 4442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4444 30.91 NaN 39551 35 0 5010.2 0.261 + -1 AFCVAIFWDM 10 33 425.8560786152096 1274.5464064458288 3 426.5322570800781 MULTI HCD FTMS 0 0 0 4442 1825.194091796875 0.1232736727492712 -7 0.1589832305908203 2 Carbamidomethyl (C),Oxidation (M) _AFC(Carbamidomethyl (C))VAIFWDM(Oxidation (M))_ REV__ENSG00000109158|ENST00000264318|GABRA4;REV__ENSG00000145863|ENST00000274545|GABRA6 0.776531954647913 0.4711933975711956 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1458 0 0 1109.5003839622334 0 1109.5003839622334 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1458 + + 5 + NaN NaN 86843.7 NaN 2499 1943 4442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4445 30.914 NaN 28542 35 0 3635.7 0.261 + 24152 RYEHFFAY 8 26 566.7640557595627 1131.5135585859252 2 567.2652587890625 MULTI HCD FTMS 0 0 0 4442 7641.58349609375 0.25406773965219426 11 -0.2103271484375 3 Unmodified _RYEHFFAY_ tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91849.9 NaN 2500 1943 4442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4446 30.917 NaN 24481 35 0 5534.6 0.261 + -1 MHFCHSCQ 8 19 533.1908842748642 NaN 0 533.1911010742188 PEAK HCD FTMS 0 0 0 4442 11799.3720703125 0.6546591573068774 158 -3.4231624603271484 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))HFC(Carbamidomethyl (C))HSCQ_ REV__ENSG00000141552|ENST00000344877|ANAPC11;REV__ENST00000357385.7_1_17:79857297-79857938:+|nuORF;REV__ENST00000573956.1_1_17:79857674-79857938:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87134.7 NaN 2501 1943 4442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4447 30.92 NaN 13881 35 0 5735.6 0.261 + 19037 NDRDCNVLLI 10 12 587.7999034839878 NaN 0 587.800048828125 PEAK HCD FTMS 0 0 0 4442 4262.50830078125 0.57559981384826 1 -0.023389816284179688 5 Unmodified _NDRDCNVLLI_ REV__ENSG00000142623|ENST00000375471|PADI1;REV__ENSG00000159339|ENST00000375448|PADI4 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81780.1 NaN 2502 1943 4442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4448 30.924 NaN 19627 35 0 4822.4 0.261 + 14851 LKFFCMSFF 9 18 585.2796968716028 1168.5448408100056 2 585.2797241210938 MULTI HCD FTMS 0 0 0 4442 4204.75390625 0.35009455558549574 -12 0.23586654663085938 6 Unmodified _LKFFCMSFF_ ENSG00000176971|ENST00000318627|FIBIN 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89888.1 NaN 2503 1943 4442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4450 30.929 NaN 165600 35 0 24578 0.327 + 25 AAGVGDMVM 9 45 441.6883077327083 881.3620625322167 2 441.6885681152344 MULTI HCD FTMS 0 0 0 4449 125927.5078125 1 0 0 1 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 85.35673624503755 0.00464763827098139 2 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 75.227 0 0 8.5353 8.5353 88.228 0 0 0 0.05395031886706647 0.05395031886706647 0.05395031886706647 0.05395031886706647 0 2.7614393726401687 0 0.4247425010840047 0 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[QA]VG[MT]E{M(Oxidation (M))|F} 8.5353;8.5292;5.2986 -;+;- + 85 NaN NaN 108106.8 NaN 2504 1944 4449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4451 30.934 NaN 153980 35 0 37450 0.261 + 2655 DVFPNQPGGKR 11 32 405.5477153964448 1213.6213167895344 3 405.54754638671875 MULTI HCD FTMS 0 0 0 4449 42547.00390625 0.7995623268397108 -2 0.05013275146484375 2 Unmodified _DVFPNQPGGKR_ ENSG00000099958|ENST00000318109|DERL3;ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-2|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;nc|ENSG00000099958|Q96Q80-5|DERL3 8.155526934196011 0.3831532958467648 2 [DV]{M(Oxidation (M))|F} 3 8 38.952 0 0 3.2096 0 0 0 849.4324514176143 849.4324514176143 36.90105620855803 0 0 0 0 0.8494850021680094 2 0 0 + [DV]{M(Oxidation (M))|F} 3.2096 + + 12 + NaN NaN 107720 NaN 2505 1944 4449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4452 30.937 NaN 35432 35 0 9896.9 0.261 + 73 ADEGHWTPRG 10 26 563.2571700778221 NaN 0 563.2576293945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ADEGHWTPRG_ REV__ENST00000335647.9_1_6:149922841-149924410:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102937.9 NaN 2506 1944 4449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4454 30.943 NaN 96779 35 0 29006 0.327 -1 NADPQAVTM 9 27 481.71613286382154 961.4177127944431 2 481.7159729003906 MULTI HCD FTMS 0 0 0 4453 40703.140625 0.03516528134860111 -60 0.9767875671386719 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 17.44264345198275 0.2096557692338702 2 AVT{M(Oxidation (M))|F} 4 -1 46.186 0 0 4.8039 0 0 525.2177601544937 0 525.2177601544937 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 AVT{M(Oxidation (M))|F} 4.8039 + + 27 NaN NaN 95038.5 NaN 2507 1945 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4455 30.947 NaN 110290 35 0 7430 0.261 -1 IMDQHWKF 8 51 560.7663820967618 1119.5182112603236 2 560.7660522460938 MULTI HCD FTMS 0 0 0 4453 33707.1328125 0.5752068528667432 -2 0.036808013916015625 2 Oxidation (M) _IM(Oxidation (M))DQHWKF_ ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31 15.847184025352803 0.47719562709667024 2 YPD 3 -1 37.652 0 0 3.3632 0 0 0 741.3570040338499 741.3570040338499 16.453650195120844 0 0 0 0 0.5 1.3979400086720375 0 0 YPD 3.3632 - 80 + NaN NaN 101600.8 NaN 2508 1945 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4456 30.951 NaN 160780 35 0 32882 0.261 -1 NVTKEEPLM 9 29 538.7684902212854 1075.5224275093708 2 538.7682495117188 MULTI HCD FTMS 0 0 0 4453 20567.587890625 0.6579648473265606 -5 0.11685943603515625 3 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3579 0 0 910.4766339076115 0 910.4766339076115 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3579 + + 5 + NaN NaN 110214.3 NaN 2509 1945 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4457 30.954 NaN 15476 35 0 4064.7 0.261 + 35306 YWKFHFQN 8 10 585.2796968716028 1168.5448408100056 2 585.2665405273438 MULTI HCD FTMS 0 0 0 4453 3979.68994140625 0.33135536882044814 -10 0.20593833923339844 4 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100433 NaN 2510 1945 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4458 30.957 NaN 14440 35 0 5658.2 0.261 -1 0 11 624.2355610178386 623.2282845512385 1 624.2361450195312 MULTI HCD FTMS 0 0 0 4453 8799.763671875 0.6285266202945642 -36 0.6253013610839844 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104274.1 NaN 2511 1945 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4459 30.961 NaN 44970 35 0 9291.9 0.261 -1 PSSCWWFF 8 24 558.7332197494718 1115.4518865657435 2 558.7328491210938 MULTI HCD FTMS 0 0 0 4453 5467.7509765625 0.805074361842223 1 -0.02337646484375 6 Carbamidomethyl (C) _PSSC(Carbamidomethyl (C))WWFF_ ENST00000296257.9_1_3:185344110-185347744:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89369.6 NaN 2512 1945 4453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4461 30.966 NaN 201120 35 0 20406 0.327 + 9280 HPNDDDVHF 9 35 548.2282163139108 1094.4418796946215 2 548.2282104492188 MULTI HCD FTMS 0 0 0 4460 77094.1640625 0.2644683624854447 15 -0.2767658233642578 1 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 60.07390631473393 0.0174780869009295 2 HPNDDDVH{M(Oxidation (M))|F} 9 0 + 47.598 0 0 4.349 4.349 87.889 0 0 0 28.133637307377057 10.642492736872597 10.642492736872597 13.455612550363796 0 1.6237125054200234 0 0 0.4247425010840047 + + HPNDDDVH{M(Oxidation (M))|F};HPGGDDDVH{M(Oxidation (M))|F};[NP]HDDDVH{M(Oxidation (M))|F} 4.349;3.1196;1.771 +;-;- + 61 + NaN NaN 119195.6 NaN 2513 1946 4460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4462 30.97 NaN 111920 35 0 18014 0.261 + 8492 HADQAEIRSL 10 37 570.2938449930249 1138.5731370528497 2 570.2937622070312 MULTI HCD FTMS 0 0 0 4460 72322.84375 0.07781766062996928 18 -0.3369140625 2 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 46.4752305370441 0.09060834033530853 2 HADQAE{I|L} 7 3 75.813 0 0 6.6586 0 0 0 371.2045992486938 371.2045992486938 65.3551001145373 0 0 0 0 1.7134679910804405 1.0969100130080565 0 0.3252574989159953 + HADQAE{I|L} 6.6586 + + 61 + NaN NaN 103188.4 NaN 2514 1946 4460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4463 30.974 NaN 129010 35 0 28753 0.262 -1 SSGPVDPMM 9 24 476.69094338812386 951.3673338430477 2 476.6910095214844 MULTI HCD FTMS 0 0 0 4460 55521.45703125 0.26711759795319057 7 -0.13014984130859375 3 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.20630486905475 0 427.20630486905475 0 22.43501263708417 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 7 NaN NaN 108650.4 NaN 2515 1946 4460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4464 30.977 NaN 37121 35 0 7013.5 0.261 + 12342 KMWVMGKLV 9 26 546.3086232000261 1090.602693466852 2 546.3082885742188 MULTI HCD FTMS 0 0 0 4460 9645.06640625 0.03153588909464911 29 -0.5674285888671875 4 Unmodified _KMWVMGKLV_ ENST00000378119.8_1_6:24719560-24720079:-|nuORF 3.944395688203298 0.32111559684428237 2 KY 2 8 20.969 0 0 1.9227 0 0 0 796.4203585260374 796.4203585260374 4.7712125471966225 0 0 0 0 0 0 0 0 KY 1.9227 - 11 + NaN NaN 94217.1 NaN 2516 1946 4460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4466 30.983 NaN 733360 35 0 95616 0.327 + 24522 RYLENGKETL 10 71 408.2191647610487 1221.6356648833462 3 408.21917724609375 MULTI HCD FTMS 0 0 0 4465 358687.71875 0.4888123035148641 -3 0.053516387939453125 1 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 55.838528706154385 0.05655609420030721 2 [YR]{I|L}ENGKET{I|L} 10 0 + 73.065 0 0 5.9809 5.9809 87.778 0 0 0 7.269987279362624 62.351453248366795 7.269987279362624 9.164539485499255 0 2.341129063296272 0 0 0.4247425010840047 + + [YR]{I|L}ENGKET{I|L};[YR]{I|L}EGGGKET{I|L};[YR]{I|L}NEGKET{I|L};[YR]{I|L}GGEGKET{I|L} 5.9809;5.2307;4.8694;4.8136 +;-;-;- + 563 NaN NaN 189716.5 NaN 2517 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4467 30.987 NaN 451830 35 0 35508 0.261 + 24525 RYLENGKETL 10 72 611.8251068150937 1221.6356606969873 2 611.8250732421875 MULTI HCD FTMS 0 0 0 4465 215502.75 0.44470502748868806 -3 0.053516387939453125 2 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 57.47667514258094 0.050598517644388045 2 [YR]{I|L}ENGKET{I|L} 10 0 + 92.256 0 0 7.5518 7.5518 90.588 0 0 0 3.106121657239953 69.73705952196511 3.106121657239953 9.164539485499262 0 1.2302046884880937 0 0.7742275032520141 1.5044321917401078 + + [YR]{I|L}ENGKET{I|L};[YR]{I|L}EGGGKET{I|L};[YR]{I|L}NEGKET{I|L};[YR]{I|L}ENGKTE{I|L};[YR]{I|L}ENGT[VG]T{I|L};[YR]{I|L}GGEGKET{I|L};[YR]{I|L}ENGTKE{I|L};[YR]{I|L}EGGGKTE{I|L};[YR]{I|L}EGGGT[VG]T{I|L};[YR]{I|L}NN{[TV]|[{I|L}S]}ET{I|L} 7.5518;6.8016;6.3171;6.1182;6.0634;5.5669;5.38;5.368;5.3161;5.0286 +;-;-;-;-;-;-;-;-;- + 863 NaN NaN 154680.7 NaN 2518 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4468 30.991 NaN 137770 35 0 37674 0.262 -1 SAAAVDAGMAM 11 34 513.715169452032 1025.415785970864 2 513.7151489257812 MULTI HCD FTMS 0 0 0 4465 40239.6796875 0.5542879280704445 -7 0.15695762634277344 3 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 26.268140514670165 0.22820724222159966 2 {[NV]|[RG]}SVWKV 7 -1 48.76 0 0 4.7552 0 0 0 209.9456681332264 209.9456681332264 43.275779165182726 0 0 0 0 1.3494850021680094 0 0.805462187404089 0 {[NV]|[RG]}SVWKV 4.7552 - 104 NaN NaN 105944.4 NaN 2519 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4469 30.994 NaN 41003 35 0 5656.6 0.261 + 22433 QQAFYNDP 8 23 491.716876137644 981.4191993420881 2 491.716796875 MULTI HCD FTMS 0 0 0 4465 14016.599609375 0.5636253069643725 24 -0.4738140106201172 4 Unmodified _QQAFYNDP_ ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 1.844237919475145 0.5392561982033289 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99116.6 NaN 2520 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4470 30.997 NaN 32343 35 0 5063.1 0.261 -1 MHKHQHCC 8 23 533.2123403530751 1064.41012777295 2 533.2120361328125 MULTI HCD FTMS 0 0 0 4465 16436.32421875 0.7087968861915546 -3 0.053516387939453125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MHKHQHCC_ ENSG00000082458|ENST00000374360|DLG3 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84927.9 NaN 2521 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4471 31.001 NaN 30330 35 0 5464.5 0.261 -1 WLMVLYEQDC 10 21 452.8699333952826 NaN 0 452.8700866699219 PEAK HCD FTMS 0 0 0 4465 13861.1845703125 0.6236929950387025 -2 0.04009819030761719 6 Carbamidomethyl (C) _WLMVLYEQDC(Carbamidomethyl (C))_ UBE3B|p.R604Q|1|0.29|ENSG00000151148|chr12:109510413-109510413|G/A|missense_variant 0.15932191953741626 0.34004793154798674 2 R 1 -1 6.9897 0 0 0.77343 0 0 142.45506346849646 602.1557711236936 744.61083459219 0 0 0 0 0 0 0 0 0 R 0.77343 - 1 + NaN NaN 95003.7 NaN 2522 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4472 31.004 NaN 19077 35 0 6102.8 0.261 + -1 MVLLYQMR 8 11 543.2766213741183 NaN 0 543.3237915039062 PEAK HCD FTMS 0 0 0 4465 1849.603271484375 0.9306436055630462 -1 0.016721725463867188 7 2 Oxidation (M) _M(Oxidation (M))VLLYQM(Oxidation (M))R_ REV__BMPR2|p.E274Q|1|0.06|ENSG00000204217|chr2:202519020-202519020|G/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85873.4 NaN 2523 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4473 31.007 NaN 21386 35 0 4540.2 0.261 + 35709 YYLFIIWD 8 15 566.7891664585879 1131.5637799839758 2 566.7887573242188 MULTI HCD FTMS 0 0 0 4465 6350.40869140625 0.35872160804441455 -6 0.11713409423828125 8 Unmodified _YYLFIIWD_ ENSG00000151012|ENST00000280612|SLC7A11 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100179.6 NaN 2524 1947 4465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4475 31.013 NaN 124140 35 0 14628 0.327 -1 0 33 522.7512278841235 1043.487902835047 2 522.7368774414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 SA{I|L}E{M(Oxidation (M))|F} 5 -1 38.315 0 0 3.6719 0 0 478.20933730293126 0 478.20933730293126 0 16.549471895720984 0 0 0 0 0 0.4247425010840047 0 SA{I|L}E{M(Oxidation (M))|F} 3.6719 - 36 NaN NaN 110342.7 NaN 2525 1948 4474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4476 31.017 NaN 39803 35 0 5517.5 0.261 + 22253 QPADAERAL 9 26 485.7513590313445 969.4881651294891 2 485.75115966796875 MULTI HCD FTMS 0 0 0 4474 13378.9189453125 0.020366044062920252 31 -0.6010036468505859 2 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 6.2057823575117 0.30397260197431997 2 [QP]W 3 7 7.4473 0 0 0.76817 0 0 0 555.2896822565061 555.2896822565061 0.45757490560674974 0 0 0 0 0 0 0 0 [QP]W 0.76817 - 15 + NaN NaN 98523.4 NaN 2526 1948 4474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4477 31.021 NaN 15942 35 0 3039.7 0.261 + 9112 HPGAREPPGYR 11 18 618.8151446152796 1235.615736297359 2 619.316650390625 MULTI HCD FTMS 0 0 0 4474 5360.923828125 0.6161556753339782 -2 0.04674339294433594 3 Unmodified _HPGAREPPGYR_ COL9A3|p.G578E|1|0.41|ENSG00000092758|chr20:62837212-62837212|G/A|missense_variant 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88825.3 NaN 2527 1948 4474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4479 31.026 NaN 1469900 35 0 563440 0.326 + 18868 NAEPEPRSL 9 53 506.7565403822393 1011.4985278312786 2 506.756591796875 MULTI HCD FTMS 0 0 0 4478 769565.3125 0.9764114200307061 1 -0.020032882690429688 1 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 80.6760300276096 0.005633624786464751 2 NAEPEPR{[TV]|[{I|L}S]} 9 0 + 81.653 0 0 8.0725 8.0725 97.374 0 0 0 70.41624401457725 2.05136871872881 2.05136871872881 81.65336906877748 0 1.5 1.3979400086720375 1.1861818737241734 0 + + NAEPEPR{[TV]|[{I|L}S]} 8.0725 + + 104 + NaN NaN 306289.7 NaN 2528 1949 4478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4480 31.031 NaN 212020 35 0 21870 0.261 + 24651 RYLSKATTL 9 49 526.8086424136991 1051.602731894198 2 526.8085327148438 MULTI HCD FTMS 0 0 0 4478 138625.875 0.918436101184684 3 -0.05671119689941406 2 Unmodified _RYLSKATTL_ ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-4|CDC16 36.506200033944 0.08138327636155518 2 {I|L}{M(Oxidation (M))|F} 2 8 38.583 0 0 3.669 0 0 0 788.4412419075886 788.4412419075886 13.534087492996392 0 0 0 0 0 2 0 0 {I|L}{M(Oxidation (M))|F} 3.669 - 65 + NaN NaN 113243.1 NaN 2529 1949 4478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4481 31.034 NaN 211130 35 0 44888 0.261 + 9386 HPTDVDYRV 9 39 551.2698853007951 1100.52521766839 2 551.2699584960938 MULTI HCD FTMS 0 0 0 4478 95085.78125 0.3201094838830357 8 -0.13342666625976562 3 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 29.84058131909904 0.11198220037953927 2 HPTD[DV]V[YR] 9 2 + 48.35 0 0 4.3934 4.3934 90.61 0 0 0 44.37076236157729 7.147642715192504 7.147642715192504 48.35016244829767 0 0.9247425010840047 0 0.5 0 HPTD[DV]V[YR] 4.3934 - 27 + NaN NaN 116445.3 NaN 2530 1949 4478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4482 31.037 NaN 25710 35 0 3758.8 0.261 -1 HPASDKIEAYM 11 17 639.2953517411374 1276.5761505490748 2 639.2958374023438 MULTI HCD FTMS 0 0 0 4478 20168.53125 0.7764324218489479 -7 0.14701461791992188 4 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.498486711656943 0.4079631525365919 2 A{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2109 0 0 971.4332752912125 0 971.4332752912125 0 8.467874862246562 0 0 0 0.5 0 0 0 A{[ES]|[DT]|[{I|L}C]} 1.2109 - 3 NaN NaN 83711.9 NaN 2531 1949 4478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4483 31.041 NaN 36717 35 0 9026.6 0.262 + -1 TYRKVDEM 8 22 529.252754007085 1056.4909550809698 2 529.2525634765625 MULTI HCD FTMS 0 0 0 4478 5381.98583984375 0.20218437791863236 10 -0.17991256713867188 5 Oxidation (M) _TYRKVDEM(Oxidation (M))_ REV__tr|U7T5Q5|U7T5Q5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00137PE=4SV=1 4.3292370932331545 0.5355693454741696 2 V{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.3868 0 0 792.3788929669937 0 792.3788929669937 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3868 - 2 NaN NaN 94422.3 NaN 2532 1949 4478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4485 31.046 NaN 155500 35 0 18004 0.327 + -1 FLLCRMNESM 10 46 425.8560786152096 1274.5464064458288 3 426.532470703125 MULTI HCD FTMS 0 0 0 4484 11555.5732421875 0.780463820636884 -2 0.03337669372558594 1 2 Oxidation (M) _FLLCRM(Oxidation (M))NESM(Oxidation (M))_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|301|3|anti-sense 0.776531954647913 0.4711933975711956 2 AY{M(Oxidation (M))|F} 3 -1 23.812 0 0 1.8683 0 0 875.4018884788351 0 875.4018884788351 0 15.228787452803374 0 0 0 0 0 0 0 AY{M(Oxidation (M))|F} 1.8683 - 9 + NaN NaN 103763.7 NaN 2533 1950 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4486 31.051 NaN 86979 35 0 20767 0.261 + 22254 QPADAERAL 9 32 485.7513590313445 969.4881651294891 2 486.2430725097656 MULTI HCD FTMS 0 0 0 4484 9341.5205078125 0.0280581462476789 32 -0.6262054443359375 2 Unmodified _QPADAERAL_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000090621|ENST00000372858|PABPC4;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 6.2057823575117 0.30397260197431997 2 W 1 9 14.604 0 0 1.5064 0 0 765.3984262152297 0 765.3984262152297 0 5.140143618001218 0 0 0 0 0 0 0 W 1.5064 - 14 + NaN NaN 93016.8 NaN 2534 1950 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4487 31.054 NaN 108250 35 0 25349 0.261 + 7173 FSINFWRYI 9 36 415.8856220276574 1244.6350366831723 3 415.87542724609375 MULTI HCD FTMS 0 0 0 4484 8414.0224609375 0.6933706577113912 -5 0.10349655151367188 3 Unmodified _FSINFWRYI_ REV__ENSG00000166986|ENST00000262027|MARS1;REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF;REV__nc|ENSG00000166986|P56192-2|MARS1 1.1933415558491238 0.3419706357095994 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94794.5 NaN 2535 1950 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4488 31.057 NaN 76465 35 0 16404 0.261 -1 KYLEERAMRQF 11 32 496.25376561158544 1485.7394674349564 3 496.255615234375 MULTI HCD FTMS 0 0 0 4484 11204.7431640625 0.07948545670547 36 -0.7026271820068359 4 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.41447547578978133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105906.4 NaN 2536 1950 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4489 31.061 NaN 24935 35 0 4725.7 0.261 -1 MERFVRVPY 9 17 627.8196702756941 1253.624787618188 2 627.8194580078125 MULTI HCD FTMS 0 0 0 4484 7009 0.8255134287106011 -3 0.06339836120605469 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))ERFVRVPY_ ENSG00000189167|ENST00000533490|ZAR1L 0.5247636613948944 0.34703895399870666 2 H 1 -1 0.9691 0 0 0.077304 0 0 935.5330345437725 178.0061434381469 1113.5391779819195 0 0 0 0 0 0 0 0 0 H 0.077304 - 1 + NaN NaN 96218.4 NaN 2537 1950 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4490 31.064 NaN 13971 35 0 1897.6 0.261 -1 WKNCIQLMK 9 15 618.8151446152796 1235.615736297359 2 618.8152465820312 MULTI HCD FTMS 0 0 0 4484 8150.7255859375 0.9062087514713344 -1 0.020032882690429688 6 Carbamidomethyl (C),Oxidation (M) _WKNC(Carbamidomethyl (C))IQLM(Oxidation (M))K_ ENSG00000134900|ENST00000376052|TPP2;ENST00000466153.5_1_13:103307300-103330663:+|nuORF;nc|ENSG00000134900|P29144|TPP2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91440.2 NaN 2538 1950 4484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4492 31.069 NaN 134750 35 0 21067 0.327 + 26 AAGVGDMVM 9 40 441.6883077327083 881.3620625322167 2 441.6885986328125 MULTI HCD FTMS 0 0 0 4491 92208.2109375 0.7322324767579264 7 -0.11652183532714844 1 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 97.07464715276575 0.004340583992084827 2 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 75.469 0 0 8.5628 8.5628 88.688 0 0 0 1.0488003405471602 1.0488003405471602 1.0488003405471602 1.0488003405471602 0 2.7614393726401687 0 0.75 0 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.5628;8.4438 -;+ + 94 NaN NaN 118240.6 NaN 2539 1951 4491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4493 31.074 NaN 73709 35 0 14424 0.261 + 9858 HYVEKPSTF 9 24 554.2767534016753 1106.5389538701504 2 554.277099609375 MULTI HCD FTMS 0 0 0 4491 56465.09765625 1 0 0 2 Unmodified _HYVEKPSTF_ ENSG00000144591|ENST00000313597|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF;nc|ENSG00000144591|Q96IJ6-2|GMPPA 17.11289562659939 0.2125047172822487 2 HYV 3 6 48.188 0 0 4.3548 0 0 0 704.3266085260374 704.3266085260374 45.088643834802156 0 0 0 0 0.5 1.6989700043360187 0 0 + HYV 4.3548 + + 6 + NaN NaN 96223.7 NaN 2540 1951 4491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4494 31.077 NaN 110510 35 0 24943 0.264 + 2656 DVFPNQPGGKR 11 32 405.5477153964448 1213.6213167895344 3 405.5475158691406 MULTI HCD FTMS 0 0 0 4491 29237.43359375 0.5494429287324333 5 -0.08005332946777344 3 Unmodified _DVFPNQPGGKR_ ENSG00000099958|ENST00000318109|DERL3;ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-2|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;nc|ENSG00000099958|Q96Q80-5|DERL3 8.155526934196011 0.3831532958467648 2 [DV]{M(Oxidation (M))|F} 3 8 35.335 0 0 2.9115 0 0 0 849.4315768456423 849.4315768456423 24.87695494332455 0 0 0 0 0.7887254899964358 1.6989700043360187 0 0 + [DV]{M(Oxidation (M))|F} 2.9115 + + 10 + NaN NaN 100182.6 NaN 2541 1951 4491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4496 31.083 NaN 105290 35 0 27441 0.327 -1 NADPQAVTM 9 36 481.71613286382154 961.4177127944431 2 481.7160949707031 MULTI HCD FTMS 0 0 0 4495 38456.97265625 0.03322471540296508 -53 0.9076824188232422 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 23.789781309258295 0.1548179064208189 2 AVT{M(Oxidation (M))|F} 4 -1 43.928 0 0 4.5691 0 0 525.2188430208088 0 525.2188430208088 0 43.92790030352131 0 0 0 1.5 0 0 0 AVT{M(Oxidation (M))|F} 4.5691 + + 28 + NaN NaN 92106 NaN 2542 1952 4495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4497 31.087 NaN 34167 35 0 4033.7 0.261 -1 0 24 459.11386691366556 3206.746133129459 7 459.24200439453125 MULTI HCD FTMS 0 0 0 4495 1705.4522705078125 0.8399828913879097 1 -0.0133514404296875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89378.4 NaN 2543 1952 4495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4498 31.091 NaN 28066 35 0 2975.8 0.261 + 35307 YWKFHFQN 8 22 585.2796968716028 1168.5448408100056 2 585.2799682617188 MULTI HCD FTMS 0 0 0 4495 9193.5537109375 0.7654700304571599 -3 0.05671119689941406 3 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105292.7 NaN 2544 1952 4495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4500 31.096 NaN 112360 35 0 10855 0.327 + 9281 HPNDDDVHF 9 49 548.2282163139108 1094.4418796946215 2 548.2281494140625 MULTI HCD FTMS 0 0 0 4499 41751.13671875 0.14322555921304414 22 -0.43727874755859375 1 Unmodified _HPNDDDVHF_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 53.832793166522166 0.026208976789938845 2 HVH{M(Oxidation (M))|F} 4 5 35.918 0 0 3.2818 0 0 556.1769276349625 0 556.1769276349625 0 4.987737688117235 0 0 0 1 0 0 0 HVH{M(Oxidation (M))|F} 3.2818 - 68 NaN NaN 93326.2 NaN 2545 1953 4499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4501 31.101 NaN 68562 35 0 7203.5 0.261 + 8493 HADQAEIRSL 10 38 570.2938449930249 1138.5731370528497 2 570.2935180664062 MULTI HCD FTMS 0 0 0 4499 47150.2109375 0.0507325061228091 25 -0.5008754730224609 2 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 36.39500950444726 0.17669046703598293 2 HADQAE 6 4 59.245 0 0 5.2035 0 0 0 484.2849274239539 484.2849274239539 46.48112174783794 0 0 0 0 1.7302046884880937 0 0.3807196863200844 0 + HADQAE 5.2035 + + 57 + NaN NaN 107630.7 NaN 2546 1953 4499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4502 31.104 NaN 173740 35 0 36317 0.261 -1 NVTKEEPLM 9 35 538.7684902212854 1075.5224275093708 2 538.768310546875 MULTI HCD FTMS 0 0 0 4499 30309.572265625 0.9696145797133288 3 -0.05332183837890625 3 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 21.536976647645854 0.1742816388551942 2 {[NV]|[RG]}T 3 -1 18.952 0 0 1.7622 0 0 0 758.3413179986936 758.3413179986936 13.70181344747122 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {[NV]|[RG]}T 1.7622 + + 3 + NaN NaN 117781.1 NaN 2547 1953 4499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4503 31.107 NaN 64961 35 0 10775 0.261 -1 SSGPVDPMM 9 24 476.69094338812386 951.3673338430477 2 476.6913146972656 MULTI HCD FTMS 0 0 0 4499 21670.24609375 0.10425706372149018 14 -0.2802543640136719 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 10.823927491677226 0.26684000660059787 2 D 1 -1 13.979 0 0 1.4694 0 0 409.13388270757804 424.1841672329092 833.3180499404873 0 0 0 0 0 0.8494850021680094 0 0 0 D 1.4694 + + 3 + NaN NaN 96534.2 NaN 2548 1953 4499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4504 31.111 NaN 24872 35 0 3492.4 0.261 -1 RMPNSPAPHF 10 20 585.2796968716028 1168.5448408100056 2 585.2658081054688 MULTI HCD FTMS 0 0 0 4499 8188.1181640625 0.6817558538843409 -2 0.026731491088867188 5 Oxidation (M) _RM(Oxidation (M))PNSPAPHF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86992.9 NaN 2549 1953 4499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4506 31.116 NaN 1088400 35 0 139960 0.327 + 24523 RYLENGKETL 10 75 408.2191647610487 1221.6356648833462 3 408.21923828125 MULTI HCD FTMS 0 0 0 4505 587083.8125 0.800065839289106 4 -0.06979751586914062 1 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 62.89396527753397 0.030897030654610403 2 [YR]{I|L}ENGKET{I|L} 10 0 + 77.273 0 0 6.3253 6.3253 88.396 0 0 0 7.269987279362624 65.27794561964745 7.269987279362624 9.164539485499262 0 2.412437995416459 0 0.3494850021680094 0.4247425010840047 + + [YR]{I|L}ENGKET{I|L};[YR]{I|L}EGGGKET{I|L};[YR]{I|L}NEGKET{I|L};[YR]{I|L}GGEGKET{I|L};{[QN]|[E{I|L}]|[KN]}[YR]NGKET{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[TA]NGKET{I|L};[SG][WR]RE[YR]{I|L} 6.3253;5.5752;5.2139;5.158;4.3999;4.2464;1.5824 +;-;-;-;-;-;- + 1013 NaN NaN 248017.8 NaN 2550 1954 4505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4507 31.121 NaN 581440 35 0 43887 0.261 + 24526 RYLENGKETL 10 75 611.8251068150937 1221.6356606969873 2 611.8250732421875 MULTI HCD FTMS 0 0 0 4505 370587.9375 0.7647341805750215 4 -0.06979751586914062 2 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 70.34457934744434 0.017177041244763738 2 ENGKET{I|L} 7 3 85.368 0 0 6.988 0 0 432.24780987545597 0 432.24780987545597 0 65.76683554084717 0 0 0 1.829689690656103 0 0.7742275032520141 1.1861818737241734 + ENGKET{I|L} 6.988 + + 1988 NaN NaN 172280 NaN 2551 1954 4505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4508 31.124 NaN 71254 35 0 6571.3 0.261 + 9258 HPLSDHEATL 10 27 560.275116196647 1118.535679460094 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4505 31624.466796875 0.7068403850494103 -1 0.019992828369140625 3 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 24.020572477871973 0.2864316864133941 2 EAT{I|L} 4 6 36.414 0 0 3.2555 0 0 686.3124256818375 0 686.3124256818375 0 18.455612550363796 0 0 0 0 0 0.9247425010840047 0 + EAT{I|L} 3.2555 + + 15 NaN NaN 98947.4 NaN 2552 1954 4505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4509 31.127 NaN 39530 35 0 8659.5 0.262 + 12154 KKKKKKKKKSF 11 32 469.3285295826401 NaN 0 469.3283386230469 PEAK HCD FTMS 0 0 0 4505 11385.8271484375 0.8145038162072824 -128 2.1249618530273438 4 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 P 1 11 3.0989 0 0 0.33086 0 0 689.7145562582506 146.85024439029533 836.5648006485459 0 0 0 0 0 0 0 0 0 P 0.33086 - 1 + NaN NaN 87662.5 NaN 2553 1954 4505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4511 31.133 NaN 169860 35 0 35859 0.327 + 11512 IYRMVSWH 8 45 546.2782054061008 1090.5418578790016 2 546.7696533203125 MULTI HCD FTMS 0 0 0 4510 3465.126953125 0.3142610142450102 3 -0.05309104919433594 1 Unmodified _IYRMVSWH_ REV__ENST00000482587.5_3_1:179833414-179833447:-|nuORF 7.910154910731844 0.5302565402355366 2 NNGNE 5 -1 32.211 0 0 2.9537 0 0 130.11182622006112 429.2262362115844 559.3380624316455 0 0 0 0 0 1.305462187404089 0 0 0.5 NNGNE 2.9537 - 130 + NaN NaN 112653.3 NaN 2554 1955 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4512 31.137 NaN 27114 35 0 3694.9 0.261 -1 YYDGKVMKL 9 21 566.7891664585879 1131.5637799839758 2 566.7889404296875 MULTI HCD FTMS 0 0 0 4510 12559.923828125 0.7094844271420657 2 -0.02666473388671875 2 Oxidation (M) _YYDGKVM(Oxidation (M))KL_ ENSG00000198900|ENST00000361337|TOP1 3.944395688203298 0.32111559684428237 2 YYD 3 -1 30.458 0 0 2.6916 0 0 0 687.3863009088499 687.3863009088499 27.35863111416478 0 0 0 0 0 2 0 0 YYD 2.6916 + + 1 + NaN NaN 83618.3 NaN 2555 1955 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4513 31.141 NaN 28379 35 0 5819.8 0.261 -1 SYGDNSYLM 9 25 533.2123403530751 1064.41012777295 2 533.2128295898438 MULTI HCD FTMS 0 0 0 4510 7068.2373046875 0.304809306858909 5 -0.08652114868164062 3 Oxidation (M) _SYGDNSYLM(Oxidation (M))_ ENST00000466796.1_1_1:32682183-32682381:-|nuORF 0.6014990680409731 0.3464572424761564 2 R 1 -1 4.6041 0 0 0.43255 0 0 496.06419379033133 409.23557459049067 905.299768380822 0 0 0 0 0 0 0 0 0 R 0.43255 - 2 + NaN NaN 88639.9 NaN 2556 1955 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4514 31.144 NaN 32185 35 0 9771.1 0.261 + 23017 RAYAMEIND 9 19 541.7505280721081 1081.486503211016 2 541.7632446289062 MULTI HCD FTMS 0 0 0 4510 7419.98095703125 1 0 0 4 Unmodified _RAYAMEIND_ REV__ENSG00000102900|ENST00000308159|NUP93;REV__nc|ENSG00000102900|Q8N1F7-2|NUP93 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 85910.2 NaN 2557 1955 4510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4516 31.149 NaN 151240 35 0 42102 0.327 -1 SAAAVDAGMAM 11 38 513.715169452032 1025.415785970864 2 513.7151489257812 MULTI HCD FTMS 0 0 0 4515 59488.08984375 0.8194282439729135 2 -0.036468505859375 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 36.506200033944 0.15945123241780773 2 WVA[NP] 5 -1 31.95 0 0 3.1159 0 0 440.1391773908219 0 440.1391773908219 0 13.99166239860314 0 0 0 1.4247425010840047 0 0 0 WVA[NP] 3.1159 - 28 NaN NaN 105954.4 NaN 2558 1956 4515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4517 31.154 NaN 115990 35 0 17813 0.261 -1 LGHEEALEM 9 27 522.7370461677192 1043.4595394022383 2 522.7368774414062 MULTI HCD FTMS 0 0 0 4515 37203.34375 0.6217399725597812 6 -0.11001777648925781 2 Oxidation (M) _LGHEEALEM(Oxidation (M))_ ENSG00000197077|ENST00000358431|KIAA1671 25.399314129420986 0.14091189997036632 2 {I|L}E{M(Oxidation (M))|F} 3 -1 39.253 0 0 3.7618 0 0 636.2850208966812 0 636.2850208966812 0 35.75765943524473 0 0 0 1.305462187404089 0 0 0 {I|L}E{M(Oxidation (M))|F} 3.7618 + + 43 NaN NaN 95547.2 NaN 2559 1956 4515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4519 31.159 NaN 435230 35 0 155110 0.327 + 18869 NAEPEPRSL 9 38 506.7565403822393 1011.4985278312786 2 506.7564392089844 MULTI HCD FTMS 0 0 0 4518 228198.640625 0.28953456597192073 9 -0.20350074768066406 1 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 41.95555342248728 0.056367691549927025 2 NAE 3 6 54.425 0 0 5.3806 0 0 0 694.352649976825 694.352649976825 46.56804392152253 0 0 0 0 1 1.3979400086720375 0.4247425010840047 0 + NAE 5.3806 + + 19 + NaN NaN 154074.8 NaN 2560 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4520 31.164 NaN 89881 35 0 18384 0.261 + 9387 HPTDVDYRV 9 25 551.2698853007951 1100.52521766839 2 551.2698364257812 MULTI HCD FTMS 0 0 0 4518 41869.1015625 0.14095374004005753 16 -0.3404273986816406 2 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 15.847184025352803 0.2234401846867398 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105095.6 NaN 2561 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4521 31.167 NaN 62332 35 0 6655.4 0.261 + 24652 RYLSKATTL 9 35 526.8086424136991 1051.602731894198 2 526.8082885742188 MULTI HCD FTMS 0 0 0 4518 38841.42578125 0.25733556350129816 11 -0.23359107971191406 3 Unmodified _RYLSKATTL_ ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-4|CDC16 8.155526934196011 0.2891920862272901 2 AT[{I|L}T] 4 5 16.427 0 0 1.5621 0 0 647.3764515607437 0 647.3764515607437 0 16.42667503568731 0 0 0 0.5 0 0 0 + AT[{I|L}T] 1.5621 + + 9 NaN NaN 93513.4 NaN 2562 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4522 31.171 NaN 164630 35 0 36767 0.261 -1 VVDPNDPQM 9 34 515.7291799365528 1029.4438069399055 2 515.7290649414062 MULTI HCD FTMS 0 0 0 4518 49371.93359375 0.46929366397125366 -5 0.07671546936035156 4 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 32.78568957990786 0.09846250359632436 2 VVD[NP]D[QP]{M(Oxidation (M))|F} 9 -1 + 26.83 0 0 2.6063 2.6063 85.841 0 0 0 2.3764301679958812 26.116962104583337 2.3764301679958812 11.478174818886375 0 1.5 0 0 0 VVD[NP]D[QP]{M(Oxidation (M))|F};VVD[WY]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F} 2.6063;1.4913 +;- + 45 NaN NaN 108052.3 NaN 2563 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4523 31.174 NaN 30241 35 0 5253.8 0.261 -1 HPASDKIEAYM 11 17 639.2953517411374 1276.5761505490748 2 639.2952270507812 MULTI HCD FTMS 0 0 0 4518 16480.31640625 0.6344463967916175 1 -0.026426315307617188 5 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.498486711656943 0.4079631525365919 2 A{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2109 0 0 971.434862205275 0 971.434862205275 0 15.45757490560675 0 0 0 0.5 0 0 0 A{[ES]|[DT]|[{I|L}C]} 1.2109 - 3 NaN NaN 100225.2 NaN 2564 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4524 31.177 NaN 28714 35 0 6076 0.261 -1 MYTDIMDPM 9 16 566.7219984351217 1131.4294439370433 2 566.7219848632812 MULTI HCD FTMS 0 0 0 4518 14703.322265625 0.6287362870847539 -3 0.04337120056152344 6 Oxidation (M) _MYTDIMDPM(Oxidation (M))_ ENSG00000175520|ENST00000311659|UBQLN3 1.844237919475145 0.33703635659052655 2 E{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.7203 0 0 837.3378773419937 0 837.3378773419937 0 19.463950151760656 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.7203 - 2 NaN NaN 91417.4 NaN 2565 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4525 31.181 NaN 38174 35 0 8665.8 0.261 + -1 KMYIEKKK 8 32 542.3171471900318 NaN 0 542.317138671875 PEAK HCD FTMS 0 0 0 4518 2096.71923828125 0.21222624492265454 1 -0.026426315307617188 7 Oxidation (M) _KM(Oxidation (M))YIEKKK_ REV__ENSG00000132554|ENST00000360863|RGS22;REV__nc|ENSG00000132554|Q8NE09-3|RGS22 0.6903765706972694 0.38822285293237185 2 N 1 -1 6.9897 0 0 0.64563 0 0 540.8250769954949 424.72141443424067 965.5464914297356 0 0 0 0 0 0 0 0 0 N 0.64563 - 1 + NaN NaN 103755.4 NaN 2566 1957 4518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4527 31.186 NaN 1101900 35 0 335670 0.327 + 23587 RPEEDAAAL 9 56 486.24336838404344 970.4721838348869 2 486.2432861328125 MULTI HCD FTMS 0 0 0 4526 819079.5 0.8902251839171812 -2 0.036468505859375 1 Unmodified _RPEEDAAAL_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 53.40400417844725 0.026808823219830042 2 [EP]EDRAAA{I|L} 9 2 + 84.161 0 0 8.6721 8.6721 89.004 0 0 0 17.772336398234003 44.597784055843086 17.772336398234003 1.5186375580366729 0 1.3252574989159953 1.3010299956639813 0.805462187404089 0 [EP]EDRAAA{I|L};[EP]ERDAAA{I|L};[EP]EDARAA{I|L};[EP]REDAAA{I|L};[RP]EEDAAA{I|L};[EP]EDRAV[VG];[EP]ED[VG]AVR;[EP]EDR{[NV]|[RG]}{I|L};[EP]E[VG]DAVR;[EP]ERDAV[VG] 8.6721;8.5156;8.337;7.7138;6.7333;4.9848;4.9848;4.9599;4.8283;4.8283 -;-;-;-;+;-;-;-;-;- + 379 NaN NaN 259830.9 NaN 2567 1958 4526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4528 31.19 NaN 135080 35 0 25314 0.261 + -1 FLLCRMNESM 10 43 425.8560786152096 1274.5464064458288 3 426.5325927734375 MULTI HCD FTMS 0 0 0 4526 2423.28662109375 0.16366886308091522 5 -0.103546142578125 2 2 Oxidation (M) _FLLCRM(Oxidation (M))NESM(Oxidation (M))_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|301|3|anti-sense 0.776531954647913 0.4711933975711956 2 AY{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.0555 0 0 875.4003015647726 0 875.4003015647726 0 15.228787452803374 0 0 0 0 0 0 0 AY{M(Oxidation (M))|F} 2.0555 - 11 + NaN NaN 100513.3 NaN 2568 1958 4526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4529 31.194 NaN 33184 35 0 4833.2 0.261 + 29838 VESPQAVEVP 10 20 527.7744299649984 1053.5343069967967 2 527.7740478515625 MULTI HCD FTMS 0 0 0 4526 19047.982421875 0.89986501886774 -3 0.05309104919433594 3 Unmodified _VESPQAVEVP_ REV__ENSG00000120690|ENST00000239882|ELF1;REV__nc|ENSG00000120690|P32519-2|ELF1 1.4819007175156935 0.4674597685733628 2 E 1 -1 6.9897 0 0 0.66345 0 0 134.1064067330987 787.3615816705686 921.4679884036673 0 0 0 0 0 0 0 0 0 E 0.66345 + + 6 + NaN NaN 87009.1 NaN 2569 1958 4526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4530 31.197 NaN 14680 35 0 4974 0.261 -1 ECVEVFMEM 9 15 574.7193021448769 1147.4240513565537 2 574.7197875976562 MULTI HCD FTMS 0 0 0 4526 10194.220703125 1 0 0 4 2 Oxidation (M) _ECVEVFM(Oxidation (M))EM(Oxidation (M))_ ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85026.6 NaN 2570 1958 4526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4531 31.201 NaN 10557 35 0 4154.8 0.261 + 5656 FNKYKVYFE 9 9 619.31591796875 NaN 0 619.31591796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FNKYKVYFE_ REV__CHD7|p.N1237Ifs*15|1|0.17|ENSG00000171316|chr8:60830507-60830538|TAACGTACCTAACCTATTAAACACTATGATGG/-|frameshift_variant;REV__ENSG00000171316|ENST00000423902|CHD7;REV__nc|ENSG00000171316|Q9P2D1-2|CHD7 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96967.5 NaN 2571 1958 4526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4533 31.206 NaN 38064 35 0 6735.3 0.327 + -1 FMHHEALDMTV 11 29 454.8671380491338 NaN 0 454.8671569824219 PEAK HCD FTMS 0 0 0 4532 13108.0439453125 0.6918304484551503 -24 0.4693145751953125 1 2 Oxidation (M) _FM(Oxidation (M))HHEALDM(Oxidation (M))TV_ REV__ENSG00000065268|ENST00000585809|WDR18;REV__ENST00000591276.1_1_19:990686-991256:+|nuORF 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100657 NaN 2572 1959 4532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4534 31.21 NaN 36365 35 0 6413.2 0.261 + -1 LMPFMAAMNK 10 26 585.2796968716028 1168.5448408100056 2 585.268310546875 MULTI HCD FTMS 0 0 0 4532 4624.53466796875 0.38504617522697326 4 -0.08348655700683594 2 Oxidation (M) _LM(Oxidation (M))PFMAAMNK_ REV__ENSG00000177200|ENST00000447540|CHD9;REV__nc|ENSG00000177200|Q3L8U1-2|CHD9;REV__nc|ENSG00000177200|Q3L8U1-3|CHD9 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96510.3 NaN 2573 1959 4532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4535 31.214 NaN 44663 35 0 8728.4 0.261 + 21638 PYRCFKRR 8 30 563.3074575141791 1124.600362095158 2 563.3065185546875 MULTI HCD FTMS 0 0 0 4532 9492.2392578125 0.7213890463311073 -3 0.05652809143066406 3 Unmodified _PYRCFKRR_ ENSG00000133980|ENST00000256362|VRTN 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108865.1 NaN 2574 1959 4532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4537 31.219 NaN 55882 35 0 10519 0.327 + -1 PCHITCVI 8 23 500.2407626368483 998.4669723404966 2 500.2405090332031 MULTI HCD FTMS 0 0 0 4536 23980.234375 0.8606710762412154 1 -0.023395538330078125 1 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))HITC(Carbamidomethyl (C))VI_ REV__ENST00000305536.10_1_X:129546956-129547052:+|nuORF 5.230669730166228 0.5342319408533849 2 V{I|L} 2 -1 20.969 0 0 2.1001 0 0 768.3029652326187 0 768.3029652326187 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.1001 + + 1 NaN NaN 93976.1 NaN 2575 1960 4536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4538 31.224 NaN 62870 35 0 11792 0.261 + 19250 NLALAQHQV 9 28 497.27895324672085 992.5433535602417 2 497.78021240234375 MULTI HCD FTMS 0 0 0 4536 10796.0537109375 0.9223313096565823 6 -0.1436443328857422 2 Unmodified _NLALAQHQV_ REV__ENSG00000278023|ENST00000620284|RDM1;REV__nc|ENSG00000278023|Q8NG50-10|RDM1;REV__nc|ENSG00000278023|Q8NG50-11|RDM1;REV__nc|ENSG00000278023|Q8NG50-12|RDM1;REV__nc|ENSG00000278023|Q8NG50-2|RDM1;REV__nc|ENSG00000278023|Q8NG50-3|RDM1;REV__nc|ENSG00000278023|Q8NG50-4|RDM1;REV__nc|ENSG00000278023|Q8NG50-5|RDM1;REV__nc|ENSG00000278023|Q8NG50-6|RDM1;REV__nc|ENSG00000278023|Q8NG50-7|RDM1;REV__nc|ENSG00000278023|Q8NG50-8|RDM1;REV__nc|ENSG00000278023|Q8NG50-9|RDM1 6.723162845929126 0.3000504726104499 2 {[QV]|[N{I|L}]|[RA]|[KV]}A 3 -1 14.265 0 0 1.4372 0 0 0 691.3407686822874 691.3407686822874 7.275071725447406 0 0 0 0 0.3807196863200844 0 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}A 1.4372 + + 7 + NaN NaN 91530.9 NaN 2576 1960 4536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4539 31.227 NaN 41380 35 0 5283.3 0.261 + -1 QAYCVGLGCV 10 28 563.7543093458452 1125.4940657584903 2 563.7540893554688 MULTI HCD FTMS 0 0 0 4536 17664.333984375 0.3417797046742229 -3 0.059856414794921875 3 2 Carbamidomethyl (C) _QAYC(Carbamidomethyl (C))VGLGC(Carbamidomethyl (C))V_ REV__ENSG00000154721|ENST00000480456|JAM2;REV__ENST00000492962.1_1_21:27074502-27081762:+|nuORF;REV__nc|ENSG00000154721|P57087-2|JAM2;REV__nc|ENSG00000154721|P57087-3|JAM2 1.844237919475145 0.46554186016084764 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84845.1 NaN 2577 1960 4536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4540 31.231 NaN 32968 35 0 4479.7 0.261 -1 WCCMQRCCGSG 11 22 493.1675308001538 1476.4807630006615 3 493.5019836425781 MULTI HCD FTMS 0 0 0 4536 5558.41162109375 0.3640265456445534 -5 0.08652114868164062 4 4 Carbamidomethyl (C),Oxidation (M) _WC(Carbamidomethyl (C))C(Carbamidomethyl (C))M(Oxidation (M))QRC(Carbamidomethyl (C))C(Carbamidomethyl (C))GSG_ ENST00000599720.5_1_19:44276206-44284904:-|nuORF 0 0.41892066650488113 2 S 1 -1 6.9897 0 0 0.4734 0 0 823.2167381977303 563.2094820611936 1386.4262202589239 0 0 0 0 0 0 0 0 0 S 0.4734 + + 1 + NaN NaN 91158.5 NaN 2578 1960 4536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4541 31.234 NaN 26642 35 0 3822.2 0.261 + 30911 VQYENPWF 8 22 541.7505280721081 1081.486503211016 2 542.2514038085938 MULTI HCD FTMS 0 0 0 4536 3502.68505859375 0.45466276105163095 1 -0.023395538330078125 5 Unmodified _VQYENPWF_ REV__ENSG00000060656|ENST00000373779|PTPRU;REV__ENSG00000152894|ENST00000368226|PTPRK;REV__ENST00000429595.1_1_6:128556737-128643312:-|nuORF;REV__ENST00000524481.5_1_6:128321419-128841710:-|nuORF;REV__ENST00000524534.5_1_6:128384662-128841530:-|nuORF;REV__nc|ENSG00000060656|Q92729-3|PTPRU;REV__nc|ENSG00000060656|Q92729-4|PTPRU;REV__nc|ENSG00000060656|Q92729|PTPRU;REV__nc|ENSG00000152894|Q15262-3|PTPRK;REV__nc|ENSG00000152894|Q15262-4|PTPRK;REV__nc|ENSG00000152894|Q15262|PTPRK;REV__PTPRU|p.Q740Rfs*47|1|0.23|ENSG00000060656|chr1:29284767-29284767|C/-|frameshift_variant 2.0597508629832335 0.5389364538378849 2 Y 1 -1 6.9897 0 0 0.6463 0 0 64.07043983386605 851.3331392877561 915.4035791216222 0 0 0 0 0 0 0 0 0 Y 0.6463 + + 4 + NaN NaN 88444.5 NaN 2579 1960 4536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4542 31.237 NaN 40016 35 0 9518.7 0.261 + 8137 GNRGRNRQ 8 26 479.2581052069343 NaN 0 479.2586975097656 PEAK HCD FTMS 0 0 0 4536 5923.25634765625 1 0 0 6 Unmodified _GNRGRNRQ_ ENST00000573951.1_1_16:3313772-3314576:+|nuORF 0.6903765706972694 0.38822285293237185 2 C 1 8 1.5938 0 0 0.16663 0 0 478.69475548047177 371.7712801568969 850.4660356373687 0 0 0 0 0 0 0 0 0 C 0.16663 - 1 + NaN NaN 87852.2 NaN 2580 1960 4536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4544 31.243 NaN 110290 35 0 33005 0.327 -1 NADPQAVTM 9 29 481.71613286382154 961.4177127944431 2 481.71600341796875 MULTI HCD FTMS 0 0 0 4543 45362.76171875 0.03919093844099152 -44 0.7747344970703125 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 2 AVT{M(Oxidation (M))|F} 4 -1 50.433 0 0 5.2457 0 0 525.2169056623062 0 525.2169056623062 0 47.33410649039925 0 0 0 1.8494850021680094 0 0 0 AVT{M(Oxidation (M))|F} 5.2457 + + 39 NaN NaN 112946.1 NaN 2581 1961 4543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4545 31.247 NaN 63916 35 0 6333 0.261 -1 DTVTMQVTAR 10 36 569.2822246508927 1136.5498963685852 2 569.2817993164062 MULTI HCD FTMS 0 0 0 4543 28703.796875 0.8442902360142712 -2 0.03676605224609375 2 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 23.80106514851385 0.2884848839100546 2 VT{[QV]|[N{I|L}]|[RA]|[KV]} 4 -1 23.188 0 0 2.0402 0 0 691.2855663898728 0 691.2855663898728 0 8.494850021680094 0 0 0 0.8494850021680094 0 0 0 VT{[QV]|[N{I|L}]|[RA]|[KV]} 2.0402 + + 20 + NaN NaN 93020.8 NaN 2582 1961 4543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4546 31.251 NaN 161520 35 0 37187 0.261 -1 NVTKEEPLM 9 33 538.7684902212854 1075.5224275093708 2 538.7682495117188 MULTI HCD FTMS 0 0 0 4543 14323.732421875 0.45822157008510067 11 -0.23047256469726562 3 Oxidation (M) _NVTKEEPLM(Oxidation (M))_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3579 0 0 910.4771984828068 0 910.4771984828068 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3579 + + 6 + NaN NaN 113791.9 NaN 2583 1961 4543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4547 31.254 NaN 62023 35 0 11398 0.261 + 16678 LWRLSLHR 8 31 540.8248290274972 1079.6351051217944 2 540.82470703125 MULTI HCD FTMS 0 0 0 4543 18585.78125 0.7149633638302283 -2 0.03676605224609375 4 Unmodified _LWRLSLHR_ ENST00000354884.8_1_11:47436368-47436683:+|nuORF 5.230669730166228 0.5342319408533849 2 C 1 8 6.9897 0 0 0.64741 0 0 580.72187987941 392.8728121393188 973.5946920187289 0 0 0 0 0 0 0 0 0 C 0.64741 - 2 + NaN NaN 92054.1 NaN 2584 1961 4543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4549 31.26 NaN 266250 35 0 31998 0.327 + 24524 RYLENGKETL 10 54 408.2191647610487 1221.6356648833462 3 408.2190246582031 MULTI HCD FTMS 0 0 0 4548 142562.5 0.19428126578375585 12 -0.25384521484375 1 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 38.558800761779466 0.1579133335467903 2 NN{I|L}{[MG]|[TS]}{I|L} 6 7 43.391 0 0 3.5518 0 0 561.2923960473229 0 561.2923960473229 0 37.421525057367404 0 0 0 1.4247425010840047 0 0.3252574989159953 0.3494850021680094 NN{I|L}{[MG]|[TS]}{I|L} 3.5518 - 71 + NaN NaN 123752.8 NaN 2585 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4550 31.264 NaN 194960 35 0 27639 0.261 + 24527 RYLENGKETL 10 45 611.8251068150937 1221.6356606969873 2 611.824951171875 MULTI HCD FTMS 0 0 0 4548 98392.53125 0.20303988377973298 12 -0.25384521484375 2 Unmodified _RYLENGKETL_ ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204642|ENST00000259951|HLA-F;ENSG00000206503|ENST00000376809|HLA-A;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;nc|ENSG00000206503|P04439-2|HLA-A 16.13717665003241 0.3601703111155208 2 [YR]{I|L}ENGKET{I|L} 10 0 + 59.602 0 0 4.8789 4.8789 85.973 0 0 0 3.379231027444405 52.61230030668848 3.379231027444405 9.164539485499255 0 0.4247425010840047 0 0.5 0 + + [YR]{I|L}ENGKET{I|L};[YR]{I|L}EGGGKET{I|L} 4.8789;4.1287 +;- + 134 NaN NaN 126725 NaN 2586 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4551 31.267 NaN 131120 35 0 36699 0.261 + 8778 HIEESEHVL 9 30 546.7700108789669 1091.5254688247337 2 546.7695922851562 MULTI HCD FTMS 0 0 0 4548 68205.9921875 0.8146194436168479 3 -0.07679557800292969 3 Unmodified _HIEESEHVL_ ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 26.88365393820708 0.12808753336095696 2 H{I|L} 2 7 35.433 0 0 3.2462 0 0 0 838.3590087356556 838.3590087356556 4.235162698957282 0 0 0 0 0.5 1.6989700043360187 0 0 + H{I|L} 3.2462 + + 12 + NaN NaN 105802.4 NaN 2587 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4552 31.271 NaN 58317 35 0 13567 0.261 + 25410 SEPFWEDD 8 23 512.6989495616185 1023.3833461900371 2 512.6986694335938 MULTI HCD FTMS 0 0 0 4548 39194.2578125 0.9661073415157143 1 -0.029996871948242188 4 Unmodified _SEPFWEDD_ ENSG00000183423|ENST00000594814|LRIT3;nc|ENSG00000183423|Q3SXY7-2|LRIT3 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96402.2 NaN 2588 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4553 31.274 NaN 53027 35 0 5506.3 0.261 + 9259 HPLSDHEATL 10 21 560.275116196647 1118.535679460094 2 560.275146484375 MULTI HCD FTMS 0 0 0 4548 35390.6640625 0.7910188897023162 7 -0.15362167358398438 5 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 6.2057823575117 0.44245551207394906 2 C{I|L} 2 9 16.198 0 0 1.4481 0 0 884.41770636272 0 884.41770636272 0 13.723637474483468 0 0 0 0 0 0 0 C{I|L} 1.4481 - 3 NaN NaN 90841.4 NaN 2589 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4554 31.277 NaN 28547 35 0 6542.6 0.261 + 10927 IYALWDYEP 9 19 585.2796968716028 1168.5448408100056 2 585.2664794921875 MULTI HCD FTMS 0 0 0 4548 8556.142578125 0.712398156991381 7 -0.15362167358398438 6 Unmodified _IYALWDYEP_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2 1.844237919475145 0.33703635659052655 2 Y[EP] 3 6 10.458 0 0 0.89492 0 0 761.3671742169937 0 761.3671742169937 0 8.863781092484688 0 0 0 0 0 0 0 + Y[EP] 0.89492 + + 1 NaN NaN 82811.6 NaN 2590 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4555 31.281 NaN 87951 35 0 10477 0.261 -1 LPDDPAKTTM 10 38 552.7656117886296 1103.516670644059 2 552.7636108398438 MULTI HCD FTMS 0 0 0 4548 14186.1865234375 0.042223954523194863 -9 0.16333961486816406 7 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 10.150570793230772 0.4161670024087991 2 {I|L}P 2 -1 20.969 0 0 1.9002 0 0 0 890.3637789361936 890.3637789361936 8.979400086720375 0 0 0 0 0 0 0 0 {I|L}P 1.9002 + + 8 + NaN NaN 105644.6 NaN 2591 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4556 31.284 NaN 100340 35 0 27710 0.263 + 9515 HQKEWNLKY 9 43 415.8856220276574 1244.6350366831723 3 415.87530517578125 MULTI HCD FTMS 0 0 0 4548 5316.4814453125 0.4381129541263436 6 -0.13361549377441406 8 Unmodified _HQKEWNLKY_ ENSG00000177414|ENST00000371077|UBE2U;nc|ENSG00000177414|Q5VVX9|UBE2U 0.45834013312273997 0.3475424938045562 2 K 1 8 3.9794 0 0 0.31972 0 0 64.02575403221734 1049.4878368372713 1113.5135908694886 0 0 0 0 0 0 0 0 0 + K 0.31972 + + 1 + NaN NaN 94993.3 NaN 2592 1962 4548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4558 31.29 NaN 154130 35 0 24268 0.327 + 14766 LHYLRHLTSA 10 53 404.22849664782757 NaN 0 404.21563720703125 PEAK HCD FTMS 0 0 0 4557 1923.0416259765625 0.9473985378837165 1 -0.013427734375 1 Unmodified _LHYLRHLTSA_ REV__ENSG00000107581|ENST00000369144|EIF3A;REV__nc|ENSG00000107581|Q14152-2|EIF3A 2.735195868890462 0.33784334045437464 2 G 1 -1 4.6041 0 0 0.57091 0 0 267.1780493485864 479.21918665103755 746.397235999624 0 0 0 0 0 0 0 0 0 G 0.57091 - 1 + NaN NaN 100738.9 NaN 2593 1963 4557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4559 31.294 NaN 42460 35 0 12560 0.261 -1 0 22 474.06374860816084 NaN 0 474.0639343261719 PEAK HCD FTMS 0 0 0 4557 19251.4765625 0.768469651129375 -54 0.9721641540527344 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89396.7 NaN 2594 1963 4557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4560 31.298 NaN 38419 35 0 9835.9 0.261 -1 DDRQDFCR 8 30 556.2325387519188 NaN 0 556.2318115234375 PEAK HCD FTMS 0 0 0 4557 5708.27197265625 0.6675861111967684 -2 0.04672050476074219 3 Carbamidomethyl (C) _DDRQDFC(Carbamidomethyl (C))R_ ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93776.7 NaN 2595 1963 4557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4562 31.303 NaN 150630 35 0 32865 0.327 -1 VVDPNDPQM 9 33 515.7291799365528 1029.4438069399055 2 515.72900390625 MULTI HCD FTMS 0 0 0 4561 56650.625 0.5384796064757934 2 -0.060100555419921875 1 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 36.506200033944 0.08138327636155518 2 VVD[NP]D[QP]{M(Oxidation (M))|F} 9 -1 + 50.396 0 0 4.8955 4.8955 91.33 0 0 0 18.741436528314566 46.41704663422132 18.741436528314566 50.3964467209417 0 1.805462187404089 1.3979400086720375 0 0 VVD[NP]D[QP]{M(Oxidation (M))|F} 4.8955 + + 27 NaN NaN 92961.5 NaN 2596 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4563 31.307 NaN 137190 35 0 40915 0.261 + 18870 NAEPEPRSL 9 37 506.7565403822393 1011.4985278312786 2 506.75640869140625 MULTI HCD FTMS 0 0 0 4561 52350.44140625 0.06642135242122264 16 -0.3341808319091797 2 Unmodified _NAEPEPRSL_ ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8 19.361941925380144 0.1930734562688509 2 {[QG]|[NA]}E 3 6 28.2 0 0 2.7879 0 0 0 694.3533901534164 694.3533901534164 23.595756168365014 0 0 0 0 1 0 0 0.7742275032520141 + {[QG]|[NA]}E 2.7879 + + 13 NaN NaN 97084.2 NaN 2597 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4564 31.311 NaN 45311 35 0 6382.3 0.261 + 18639 MYDDIAHS 8 26 476.1984312057 NaN 0 476.1980895996094 PEAK HCD FTMS 0 0 0 4561 9627.9697265625 0.40613815181421353 237 -5.440557479858398 3 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 2 Q 1 8 4.6041 0 0 0.48445 0 0 656.2872299877688 163.0175722711547 819.3048022589235 0 0 0 0 0 0 0 0 0 Q 0.48445 - 3 + NaN NaN 106037.9 NaN 2598 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4565 31.314 NaN 23268 35 0 3985.8 0.261 -1 ECVEVFMEM 9 19 566.7219984351217 1131.4294439370433 2 566.7222900390625 MULTI HCD FTMS 0 0 0 4561 11456.0595703125 0.4898784253474206 4 -0.09019088745117188 4 Oxidation (M) _ECVEVFMEM(Oxidation (M))_ ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16 4.3292370932331545 0.3181982124262546 2 N{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8533 0 0 852.3387318341812 0 852.3387318341812 0 20.969100130080562 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 1.8533 - 3 NaN NaN 86640.1 NaN 2599 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4566 31.318 NaN 30074 35 0 4923.2 0.261 + 31229 VVPVPLRTGD 10 19 526.8086424136991 1051.602731894198 2 526.8084106445312 MULTI HCD FTMS 0 0 0 4561 13638.9560546875 0.0903619877825581 18 -0.3694114685058594 5 Unmodified _VVPVPLRTGD_ REV__ENSG00000110171|ENST00000345851|TRIM3;REV__nc|ENSG00000110171|O75382-2|TRIM3;REV__nc|ENSG00000110171|O75382-3|TRIM3;REV__nc|ENSG00000110171|O75382-4|TRIM3 0 0.4753037046562868 2 D 1 -1 6.9897 0 0 0.66467 0 0 198.31465923970433 735.2345064752561 933.5491657149605 0 0 0 0 0 0 0 0 0 D 0.66467 + + 1 + NaN NaN 91680.8 NaN 2600 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4567 31.321 NaN 33924 35 0 6705.3 0.261 + 20319 NYQKRFQNL 9 22 605.8200010325615 1209.625449131923 2 605.8199462890625 MULTI HCD FTMS 0 0 0 4561 19019.326171875 0.2289299859763003 -5 0.09691429138183594 6 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 7.608950283845883 0.29333554423920943 2 KQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4 7 16.198 0 0 1.3391 0 0 676.3647938459 0 676.3647938459 0 16.197887582883936 0 0 0 0 0 0 0 KQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.3391 - 4 NaN NaN 101944.8 NaN 2601 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4568 31.324 NaN 27425 35 0 4623.5 0.261 -1 HPFCLSTSLES 11 18 639.2953517411374 1276.5761505490748 2 639.2952880859375 MULTI HCD FTMS 0 0 0 4561 23428.30078125 0.9019244926618807 8 -0.17032432556152344 7 Carbamidomethyl (C) _HPFC(Carbamidomethyl (C))LSTSLES_ ENST00000475699.5_1_X:153649922-153650000:+|nuORF 2.9952420565917617 0.40578455234410343 2 HP 2 -1 25.969 0 0 2.0343 0 0 0 1039.4407442682252 1039.4407442682252 25.969100130080562 0 0 0 0 0.5 0 0 0 HP 2.0343 + + 2 + NaN NaN 109216 NaN 2602 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4569 31.328 NaN 55908 35 0 6937.8 0.264 + 3138 EAQIHFPT 8 31 471.7386698707189 NaN 0 471.7535400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _EAQIHFPT_ REV__ENSG00000159228|ENST00000290349|CBR1;REV__nc|ENSG00000159228|P16152-2|CBR1 4.75600775471527 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88852.5 NaN 2603 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4570 31.331 NaN 14620 35 0 2873.3 0.261 -1 MIRVNPFCC 9 18 627.77587890625 NaN 0 627.77587890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IRVNPFC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000172716|ENST00000685675|SLFN11;ENST00000586099.1_1_17:33687354-33689887:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97930.7 NaN 2604 1964 4561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4572 31.336 NaN 501520 35 0 156400 0.327 + 23588 RPEEDAAAL 9 36 486.24336838404344 970.4721838348869 2 486.24322509765625 MULTI HCD FTMS 0 0 0 4571 391379.8125 0.4253752725642436 5 -0.09358787536621094 1 Unmodified _RPEEDAAAL_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 36.506200033944 0.08138327636155518 2 RAAA{I|L} 5 4 45.573 0 0 4.696 0 0 470.1644764630875 0 470.1644764630875 0 20.958931237911003 0 0 0 1 0 0 0 RAAA{I|L} 4.696 - 83 NaN NaN 157383.2 NaN 2605 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4573 31.341 NaN 239310 35 0 33873 0.261 + 15352 LPDDPAKTTM 10 47 552.7656117886296 1103.516670644059 2 552.7659912109375 MULTI HCD FTMS 0 0 0 4571 105034.375 0.31262571276960377 -6 0.13028526306152344 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 63.227496030279354 0.029684053017782965 2 {I|L}PDD 4 6 65.349 0 0 5.9219 0 0 0 660.3026020962042 660.3026020962042 33.253800256993955 0 0 0 0 1.2614393726401687 1.6989700043360187 0.3807196863200844 0 + {I|L}PDD 5.9219 + + 84 + NaN NaN 125255.6 NaN 2606 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4574 31.344 NaN 148410 35 0 39087 0.262 + 8151 GPHASEPQL 9 42 468.2328082766073 934.4510636200146 2 468.232666015625 MULTI HCD FTMS 0 0 0 4571 67053.359375 0.8796266119633228 -2 0.0467987060546875 3 Unmodified _GPHASEPQL_ ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4 25.399314129420986 0.14091189997036632 2 [QP]HSEPQ{I|L} 8 2 + 48.933 0 0 5.2365 5.2365 88.01 0 0 0 6.9897000433601875 43.44798238870226 6.9897000433601875 9.262137858390808 0 0.5 0 0.4247425010840047 0 [QP]HSEPQ{I|L};[QP]HSEP[AG]{I|L} 5.2365;4.2453 -;- 38 NaN NaN 123481.6 NaN 2607 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4575 31.348 NaN 73610 35 0 5666.1 0.261 + 137 AEELERQGY 9 38 547.7587603325378 1093.5029677318755 2 547.7593994140625 MULTI HCD FTMS 0 0 0 4571 28280.357421875 0.6250041222222049 4 -0.07682609558105469 4 Unmodified _AEELERQGY_ ENSG00000109111|ENST00000314616|SUPT6H 14.405379775768559 0.2358970535022398 2 {[CP]|[EA]}E{I|L}E 5 4 23.684 0 0 2.1659 0 0 0 519.2316378229124 519.2316378229124 2.7152998730866074 0 0 0 0 0.9247425010840047 0 0 0 + {[CP]|[EA]}E{I|L}E 2.1659 + + 20 + NaN NaN 83686.4 NaN 2608 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4576 31.351 NaN 95587 35 0 17310 0.263 -1 HPASDKIEAYM 11 40 426.5325155231103 1276.575717169531 3 426.5323486328125 MULTI HCD FTMS 0 0 0 4571 26430.505859375 0.4499880623180252 8 -0.16365623474121094 5 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 12.855947597645695 0.34506811884481176 2 EAY{M(Oxidation (M))|F} 4 -1 35.918 0 0 2.8136 0 0 748.3881083822247 0 748.3881083822247 0 30.43305028184122 0 0 0 1 0 0 0 EAY{M(Oxidation (M))|F} 2.8136 + + 14 + NaN NaN 97656.8 NaN 2609 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4577 31.354 NaN 63787 35 0 17757 0.261 -1 MCTMCRFV 8 24 532.2124620593496 1062.4103711854991 2 532.2127075195312 MULTI HCD FTMS 0 0 0 4571 20305.30859375 0.5452087808862655 -5 0.11691474914550781 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TMCRFV_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|113|1|anti-sense 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92458 NaN 2610 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4578 31.358 NaN 69229 35 0 9975.1 0.261 -1 0 33 471.5955979265066 2352.941607299533 5 471.79522705078125 MULTI HCD FTMS 0 0 0 4571 9030.8837890625 0.7396708235378431 -54 0.9722633361816406 7 NaN NaN 2 {[CP]|[EA]}A{I|L} 4 -1 16.198 0 0 0.68841 0 0 0 1965.7169423427551 1965.7169423427551 16.197887582883936 0 0 0 0 0 0 0 0 {[CP]|[EA]}A{I|L} 0.68841 - 11 NaN NaN 109550.5 NaN 2611 1965 4571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4580 31.363 NaN 124770 35 0 37663 0.326 -1 SAAAVDAGMAM 11 24 513.715169452032 1025.415785970864 2 513.7151489257812 MULTI HCD FTMS 0 0 0 4579 60582.30859375 0.8345007358143864 12 -0.2340106964111328 1 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 26.268140514670165 0.22820724222159966 2 [QT]AV 4 -1 27.435 0 0 2.6755 0 0 0 623.1815507168914 623.1815507168914 27.43501263708417 0 0 0 0 1 0 0.4247425010840047 0 [QT]AV 2.6755 - 21 NaN NaN 92343 NaN 2612 1966 4579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4581 31.368 NaN 88042 35 0 9385 0.261 + 3380 EESDLSRQY 9 44 563.7543093458452 1125.4940657584903 2 563.7540283203125 MULTI HCD FTMS 0 0 0 4579 48027.35546875 0.929260926730269 3 -0.05009651184082031 2 Unmodified _EESDLSRQY_ ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 43.77239144664712 0.04802738721622131 2 QRD{[MS]|[{M(Oxidation (M))|F}A]}QY 7 5 44.028 0 0 3.9119 0 0 199.0885573880915 0 199.0885573880915 0 27.830466571458743 0 0 0 0.8494850021680094 0 0 0.3807196863200844 QRD{[MS]|[{M(Oxidation (M))|F}A]}QY 3.9119 - 146 + NaN NaN 110134.5 NaN 2613 1966 4579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4582 31.371 NaN 50541 35 0 8762.1 0.261 + 9059 HPETRSAFL 9 22 529.2750493962903 1056.5355458593806 2 529.275146484375 MULTI HCD FTMS 0 0 0 4579 26871.3125 1 0 0 3 Unmodified _HPETRSAFL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 4.897010918128616 0.31389406404703984 2 HPE 3 6 26.198 0 0 2.4796 0 0 0 690.3567598932249 690.3567598932249 26.197887582883936 0 0 0 0 0 0 0 0 + HPE 2.4796 + + 9 + NaN NaN 98933.1 NaN 2614 1966 4579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4584 31.376 NaN 168590 35 0 50923 0.327 + 24306 RYGDGGSTF 9 33 480.2147753282077 958.4149977232154 2 480.2144470214844 MULTI HCD FTMS 0 0 0 4583 87312.6953125 0.4528073017526067 -3 0.07349014282226562 1 Unmodified _RYGDGGSTF_ ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 16.149105407346934 0.22083165093524068 2 NST{M(Oxidation (M))|F} 4 6 43.8 0 0 4.57 0 0 491.212205955275 0 491.212205955275 0 38.31546893236258 0 0 0 1 0 0.4247425010840047 0 NST{M(Oxidation (M))|F} 4.57 - 26 NaN NaN 107109.8 NaN 2615 1967 4583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4585 31.381 NaN 77584 35 0 8148 0.261 -1 KYAHMINGF 9 41 548.7655425074538 1095.5165320817075 2 548.7656860351562 MULTI HCD FTMS 0 0 0 4583 26084.53515625 0.6606610032238389 -2 0.040119171142578125 2 Oxidation (M) _KYAHM(Oxidation (M))INGF_ ENSG00000035687|ENST00000366535|ADSS2 10.073929032068715 0.27331982688540024 2 N{[CT]|[{M(Oxidation (M))|F}G]} 3 -1 10.458 0 0 0.95458 0 0 759.373827049025 0 759.373827049025 0 6.962724883926656 0 0 0 0 0 0 0 N{[CT]|[{M(Oxidation (M))|F}G]} 0.95458 + + 34 NaN NaN 93641.6 NaN 2616 1967 4583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4586 31.384 NaN 42184 35 0 6875.2 0.261 -1 DTVTMQVTAR 10 27 569.2822246508927 1136.5498963685852 2 569.2818603515625 MULTI HCD FTMS 0 0 0 4583 26085.58984375 0.7672785904130032 4 -0.08013153076171875 3 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 16.565877749689598 0.3561603856738253 2 {[ES]|[DT]|[{I|L}C]}VT[{I|L}A][CS]T{[QV]|[N{I|L}]|[RA]|[KV]} 11 -1 + 24.977 0 0 2.1977 2.1977 85.735 0 0 0 9.519860517667917 3.7795478403907303 3.7795478403907303 11.575773191777937 0 0.9247425010840047 0 0 0 {[ES]|[DT]|[{I|L}C]}VT[{I|L}A][CS]T{[QV]|[N{I|L}]|[RA]|[KV]};{[ES]|[DT]|[{I|L}C]}V{[RE]|[WV]}[CS]T{[QV]|[N{I|L}]|[RA]|[KV]} 2.1977;1.1792 -;- 21 + NaN NaN 95077.4 NaN 2617 1967 4583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4587 31.388 NaN 11972 35 0 4672 0.261 + -1 CILDYLIYGK 10 11 629.3311767578125 NaN 0 629.3311767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILDYLIYGK_ REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|22|1|sense 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83678 NaN 2618 1967 4583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4589 31.393 NaN 121170 35 0 15616 0.327 -1 MQPATFRCVL 10 43 408.2070254699184 NaN 0 408.2189025878906 PEAK HCD FTMS 0 0 0 4588 2256.206298828125 0.40181314213910857 4 -0.08013343811035156 1 Carbamidomethyl (C) _MQPATFRC(Carbamidomethyl (C))VL_ ENSG00000106819|ENST00000375544|ASPN 3.3196427980023873 0.3373431348853355 2 VE{I|L} 3 -1 14.425 0 0 1.7712 0 0 154.05537128705208 316.14048181705317 470.19585310410525 0 0 0 0 0 0 0 0.4247425010840047 0 VE{I|L} 1.7712 - 17 + NaN NaN 115929.4 NaN 2619 1968 4588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4590 31.398 NaN 180440 35 0 36253 0.261 + 10807 ISVWEIVGQ 9 49 515.7807655694983 NaN 0 515.798095703125 PEAK HCD FTMS 0 0 0 4588 13360.62109375 0.8917740796794918 2 -0.03676795959472656 2 Unmodified _ISVWEIVGQ_ ENSG00000006283|ENST00000359106|CACNA1G;ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H 21.74664581756881 0.17567436591797916 2 GD 2 8 13.073 0 0 1.2698 0 0 146.0748235200527 708.4052218072874 854.4800453273401 0 0 0 0 0 0 0 0.75 0 GD 1.2698 - 20 + NaN NaN 111732.2 NaN 2620 1968 4588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4591 31.401 NaN 26416 35 0 3969 0.261 -1 0 20 456.5576915464267 2733.3024904789604 6 456.89154052734375 MULTI HCD FTMS 0 0 0 4588 7578.771484375 0.5750213651117173 -1 0.01670074462890625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83222.7 NaN 2621 1968 4588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4592 31.404 NaN 57523 35 0 5205 0.261 + 3108 EALNDYKT 8 29 477.232216357922 952.4498797826441 2 477.2318420410156 MULTI HCD FTMS 0 0 0 4588 12350.68359375 0.7757279008234169 -1 0.01670074462890625 4 Unmodified _EALNDYKT_ ENSG00000143033|ENST00000370298|MTF2;nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2 3.5964929083625545 0.5366564765791996 2 D 1 7 3.0989 0 0 0.32537 0 0 428.29001895057314 406.1122225397094 834.4022414902826 0 0 0 0 0 0 0 0 0 + D 0.32537 + + 6 + NaN NaN 91189.7 NaN 2622 1968 4588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4593 31.408 NaN 37213 35 0 9328.4 0.261 -1 0 27 540.8248290274972 1079.6351051217944 2 541.7633666992188 MULTI HCD FTMS 0 0 0 4588 4324.19775390625 0.2821572042545792 6 -0.12022972106933594 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89540.1 NaN 2623 1968 4588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4595 31.413 NaN 63969 35 0 6158.4 0.327 + 9260 HPLSDHEATL 10 32 560.275116196647 1118.535679460094 2 560.2752685546875 MULTI HCD FTMS 0 0 0 4594 26325.603515625 0.5884051688574635 14 -0.28580665588378906 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 10.073929032068715 0.4168838835836452 2 HP 2 8 16.454 0 0 1.471 0 0 0 881.4100435846311 881.4100435846311 11.84955642535897 0 0 0 0 0 0 0 0 + HP 1.471 + + 5 + NaN NaN 94802.8 NaN 2624 1969 4594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4596 31.418 NaN 21645 35 0 5860.5 0.261 + 35308 YWKFHFQN 8 18 585.2796968716028 1168.5448408100056 2 585.2672729492188 MULTI HCD FTMS 0 0 0 4594 2144.6337890625 0.17856564974217362 13 -0.2592144012451172 2 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81278 NaN 2625 1969 4594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4597 31.421 NaN 28735 35 0 4711.5 0.261 + 18689 MYPRSHPRS 9 16 565.7790300609242 1129.5435071886484 2 566.2797241210938 MULTI HCD FTMS 0 0 0 4594 2058.766357421875 0.23811810639237038 -3 0.05009651184082031 3 Unmodified _MYPRSHPRS_ REV__ENSG00000100448|ENST00000216336|CTSG;REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80904.4 NaN 2626 1969 4594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4598 31.424 NaN 96783 35 0 29206 0.264 + 22602 QTSHHSIWLH 10 41 415.8754615572161 1244.6045552718483 3 415.87548828125 MULTI HCD FTMS 0 0 0 4594 7381.25439453125 0.3022081646214663 14 -0.28580665588378906 4 Unmodified _QTSHHSIWLH_ REV__ENST00000328257.12_1_11:73965393-73965618:+|nuORF 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 93964.1 NaN 2627 1969 4594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4600 31.43 NaN 586770 35 0 107800 0.327 + 20321 NYQKRFQNL 9 58 404.2158799617699 1209.6258104855096 3 404.2158203125 MULTI HCD FTMS 0 0 0 4599 268031.5625 0.9794566711119201 1 -0.026662826538085938 1 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 19.361941925380144 0.1930734562688509 2 NY 2 7 39.196 0 0 3.2403 0 0 0 929.4947777939602 929.4947777939602 18.622731327798547 0 0 0 0 0.4247425010840047 2 0 0 + NY 3.2403 + + 36 + NaN NaN 176005.6 NaN 2628 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4601 31.434 NaN 220250 35 0 45386 0.261 + 8716 HGYDKDPVL 9 58 522.2618259242886 1042.509098915377 2 522.2611694335938 MULTI HCD FTMS 0 0 0 4599 101553.640625 0.4081560075695053 -6 0.12695884704589844 2 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 40.23920728925047 0.06424668180817725 2 {[HG]|PP}YDKD[VP]{I|L} 9 0 + 44.377 0 0 4.2568 4.2568 82.57 0 0 0 4.137342758552691 22.916199917157236 4.137342758552691 3.0102999566398125 0 1.555462187404089 0 0.5 0 + + {[HG]|PP}YDKD[VP]{I|L};{[HG]|PP}YDKD{I|L}[VP];{[HG]|PP}YD[QP][{I|L}T]{I|L} 4.2568;3.968;1.8366 +;-;- + 74 NaN NaN 114717 NaN 2629 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4602 31.438 NaN 72547 35 0 13114 0.261 + 125 AEALPKQSV 9 24 471.7663037053521 941.5180544775042 2 471.766357421875 MULTI HCD FTMS 0 0 0 4599 41080.90234375 1 0 0 3 Unmodified _AEALPKQSV_ ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3 19.361941925380144 0.1930734562688509 2 {[CP]|[EA]}A{I|L} 4 5 31.198 0 0 3.3136 0 0 0 554.2942745304916 554.2942745304916 31.197887582883936 0 0 0 0 1.5 0 0 0 + {[CP]|[EA]}A{I|L} 3.3136 + + 13 NaN NaN 92726.6 NaN 2630 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4603 31.441 NaN 46076 35 0 5467.9 0.261 + 9060 HPETRSAFL 9 19 529.2750493962903 1056.5355458593806 2 529.2745971679688 MULTI HCD FTMS 0 0 0 4599 17824.21484375 0.6633176121839973 4 -0.08346176147460938 4 Unmodified _HPETRSAFL_ ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9;nc|ENSG00000144580|Q92600-3|CNOT9 5.731851221503515 0.3075653528928475 2 HPE 3 6 31.198 0 0 2.9528 0 0 0 690.3558443658811 690.3558443658811 29.604093769761874 0 0 0 0 0.5 0 0 0 + HPE 2.9528 + + 6 + NaN NaN 107765.6 NaN 2631 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4604 31.444 NaN 68835 35 0 14752 0.261 -1 LPDDPRQM 8 30 494.23183194281296 986.4491109524259 2 494.2320251464844 MULTI HCD FTMS 0 0 0 4599 19539.98828125 0.39661274511203104 -8 0.17038345336914062 5 Oxidation (M) _LPDDPRQM(Oxidation (M))_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 6.723162845929126 0.5320176132289695 2 {I|L}P 2 -1 20.969 0 0 2.1257 0 0 0 773.2877291315061 773.2877291315061 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 2.1257 + + 1 + NaN NaN 107500 NaN 2632 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4605 31.448 NaN 41491 35 0 4260.9 0.261 + 8494 HADQAEIRSL 10 30 570.2938449930249 1138.5731370528497 2 570.2941284179688 MULTI HCD FTMS 0 0 0 4599 15879.814453125 0.017086302859601846 42 -0.901275634765625 6 Unmodified _HADQAEIRSL_ ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2 9.5439744041441 0.42184090036563754 2 HAD 3 7 28.94 0 0 2.5418 0 0 0 812.4275606744749 812.4275606744749 28.940162615404077 0 0 0 0 0.4247425010840047 0 0 0 + HAD 2.5418 + + 5 + NaN NaN 92712.9 NaN 2633 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4606 31.451 NaN 51974 35 0 7847.7 0.262 + 12155 KKKKKKKKKSF 11 31 469.3285295826401 NaN 0 469.32867431640625 PEAK HCD FTMS 0 0 0 4599 5808.7314453125 0.4155371294372365 -112 1.9280452728271484 7 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 E 1 11 0.9691 0 0 0.10347 0 0 507.4749780111802 297.1099947565063 804.5849727676865 0 0 0 0 0 0 0 0 0 E 0.10347 - 1 + NaN NaN 102701.2 NaN 2634 1970 4599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4608 31.457 NaN 57842 35 0 5560.2 0.327 + 20320 NYQKRFQNL 9 29 605.8200010325615 1209.625449131923 2 605.8201904296875 MULTI HCD FTMS 0 0 0 4607 54008.9609375 0.6500898380038407 2 -0.04340553283691406 1 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 40.23920728925047 0.06424668180817725 2 [YN]QKR{M(Oxidation (M))|F}QD 8 2 49.602 0 0 4.1006 0 0 0 127.08557570406846 127.08557570406846 44.997906580286795 0 0 0 0 1.3935078169319297 1.6989700043360187 0 0.3807196863200844 [YN]QKR{M(Oxidation (M))|F}QD 4.1006 - 59 NaN NaN 103390 NaN 2635 1971 4607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4609 31.461 NaN 19783 35 0 2881.1 0.261 -1 HPMLCYSKD 9 14 583.752197265625 NaN 0 583.752197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _HPM(Oxidation (M))LC(Carbamidomethyl (C))YSKD_ ENSG00000054690|ENST00000329153|PLEKHH1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98666.8 NaN 2636 1971 4607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4610 31.465 NaN 27212 35 0 6991.4 0.261 + 23421 RLKVPDVPE 9 20 526.8086424136991 1051.602731894198 2 526.8077392578125 MULTI HCD FTMS 0 0 0 4607 12502.1533203125 0.0828303442767879 25 -0.5388126373291016 3 Unmodified _RLKVPDVPE_ REV__ENSG00000170271|ENST00000326080|FAXDC2;REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF;REV__nc|ENSG00000170271|Q96IV6-2|FAXDC2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89223.6 NaN 2637 1971 4607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4611 31.468 NaN 15620 35 0 4485.7 0.261 -1 CWIVCMLVNI 10 13 633.8036240924791 1265.5926952517582 2 634.3034057617188 MULTI HCD FTMS 0 0 0 4607 4122.69580078125 0.6181482219294236 -2 0.04342460632324219 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))WIVCM(Oxidation (M))LVNI_ ENSG00000228567|ENST00000311170|VN1R4;VN1R4|p.L251Ifs*18|1|0.12|ENSG00000228567|chr19:53266915-53266916|-/AT|frameshift_variant 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100078.8 NaN 2638 1971 4607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4613 31.473 NaN 556680 35 0 91627 0.327 + 15353 LPDDPAKTTM 10 59 552.7656117886296 1103.516670644059 2 552.765869140625 MULTI HCD FTMS 0 0 0 4612 269986.78125 0.8035922518380515 1 -0.026702880859375 1 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 124.953037156858 2.971737173510385E-05 2 {I|L}PDDPAKTT{M(Oxidation (M))|F} 10 0 + 110.84 0 0 10.045 10.045 97.6 0 0 0 87.65662222408956 14.146518864155126 14.146518864155126 26.18562527100117 0 2.8979400086720375 1.3979400086720375 1.9291746928241125 0 + + {I|L}PDDPAKTT{M(Oxidation (M))|F};{I|L}PDD[Q{I|L}][VG]T{M(Oxidation (M))|F};[{I|L}P]DDPAKTT{M(Oxidation (M))|F};[DP]{I|L}DPAKTT{M(Oxidation (M))|F};[{I|L}P]DS[PG]G{I|L}TT{M(Oxidation (M))|F};[{I|L}P]DS[NP]{I|L}TT{M(Oxidation (M))|F};[DP]D{I|L}PAKTT{M(Oxidation (M))|F};[DP]{I|L}S[PG]G{I|L}TT{M(Oxidation (M))|F};[DP]{I|L}S[NP]{I|L}TT{M(Oxidation (M))|F} 10.045;7.6717;7.4137;5.9666;5.944;5.7804;5.5247;4.4969;4.3333 +;-;+;-;-;-;-;-;- + 619 + NaN NaN 171412.3 NaN 2639 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4614 31.478 NaN 144070 35 0 42331 0.261 + 23589 RPEEDAAAL 9 21 486.24336838404344 970.4721838348869 2 486.24322509765625 MULTI HCD FTMS 0 0 0 4612 105169.2734375 0.11430433283745321 12 -0.2357006072998047 2 Unmodified _RPEEDAAAL_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 8.155526934196011 0.2891920862272901 2 AAA{I|L} 4 5 36.938 0 0 3.8062 0 0 626.2745838849625 0 626.2745838849625 0 36.938200260161125 0 0 0 0.5 0 0 0 + AAA{I|L} 3.8062 + + 7 NaN NaN 102723.2 NaN 2640 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4615 31.481 NaN 133910 35 0 19091 0.261 -1 KYLEERAMRQF 11 30 496.2538874322882 NaN 0 496.253662109375 PEAK HCD FTMS 0 0 0 4612 31900.37109375 0.36202947111879474 -9 0.18375205993652344 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.339244926269168 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104765.5 NaN 2641 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4616 31.485 NaN 17272 35 0 4568.2 0.261 -1 HPASDKIEAYM 11 16 639.2953517411374 1276.5761505490748 2 639.2949829101562 MULTI HCD FTMS 0 0 0 4612 11168.806640625 0.4299680270045981 16 -0.32552528381347656 4 Oxidation (M) _HPASDKIEAYM(Oxidation (M))_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 0.9622753412299311 0.4147004537482263 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87016.3 NaN 2642 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4617 31.488 NaN 40587 35 0 4890 0.264 -1 PVDPYNCS 8 19 476.1984312057 NaN 0 476.198486328125 PEAK HCD FTMS 0 0 0 4612 11734.431640625 0.494995363972256 245 -5.674266815185547 5 Carbamidomethyl (C) _PVDPYNC(Carbamidomethyl (C))S_ ENST00000479650.5_1_9:140469231-140473170:-|nuORF 2.302733041254933 0.38822285293237185 2 D 1 -1 4.6041 0 0 0.48445 0 0 408.1473984448 424.18342004947505 832.330818494275 0 0 0 0 0 0 0 0 0 D 0.48445 + + 2 + NaN NaN 94784.5 NaN 2643 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4618 31.491 NaN 27366 35 0 5320.1 0.261 -1 HPTDVDYRVM 10 24 624.7877100523971 1247.560867171594 2 624.7872314453125 MULTI HCD FTMS 0 0 0 4612 11651.7978515625 0.27211141071426614 -10 0.21374893188476562 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 6.2057823575117 0.44245551207394906 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87242.3 NaN 2644 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4619 31.495 NaN 37888 35 0 9226.2 0.261 + 19599 NTIVWRRF 8 21 546.3087649775208 1090.6029770218415 2 546.3090209960938 MULTI HCD FTMS 0 0 0 4612 5426.6083984375 0.5857889197984713 9 -0.17717933654785156 7 Unmodified _NTIVWRRF_ REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|143|3|sense 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97218.9 NaN 2645 1972 4612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4621 31.5 NaN 158460 35 0 24315 0.327 + 18437 MPVHAAVQM 9 42 500.2420285111997 998.4695040891994 2 500.24114990234375 MULTI HCD FTMS 0 0 0 4620 89784.9921875 0.5680181263972506 -3 0.070068359375 1 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 77.98433622928108 0.006504613272346738 2 M[VP]HAAVQ{M(Oxidation (M))|F} 9 0 + 64.007 0 0 6.4105 6.4105 94.126 0 0 0 57.01721569349729 2.0636310306115746 2.0636310306115746 64.00691573685748 0 2.742992819099939 0 0 0.8494850021680094 + + M[VP]HAAVQ{M(Oxidation (M))|F} 6.4105 + + 117 + NaN NaN 111622.1 NaN 2646 1973 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4622 31.504 NaN 22540 35 0 4791.5 0.261 + 9716 HWFCILRL 8 20 544.2968373461568 1086.5791217591136 2 544.2972412109375 MULTI HCD FTMS 0 0 0 4620 6492.87744140625 0.891009718451818 1 -0.013393402099609375 2 Unmodified _HWFCILRL_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|234|2|anti-sense 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94395.7 NaN 2647 1973 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4623 31.508 NaN 28424 35 0 9875.1 0.261 + -1 HAFYYHQM 8 17 556.7339691606749 1111.4533853881496 2 556.7343139648438 MULTI HCD FTMS 0 0 0 4620 4121.7060546875 0.8067997764999612 1 -0.013393402099609375 3 Oxidation (M) _HAFYYHQM(Oxidation (M))_ REV__ENST00000483628.1_1:206580415-206580496:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91903.5 NaN 2648 1973 4620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4625 31.513 NaN 257740 35 0 73133 0.326 + 24307 RYGDGGSTF 9 36 480.2147753282077 958.4149977232154 2 480.2144775390625 MULTI HCD FTMS 0 0 0 4624 134989.703125 0.7000622649163126 4 -0.08369064331054688 1 Unmodified _RYGDGGSTF_ ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 16.149105407346934 0.22083165093524068 2 NST{M(Oxidation (M))|F} 4 6 43.175 0 0 4.5049 0 0 491.2118397443375 0 491.2118397443375 0 43.17532531436136 0 0 0 1 0 0.4247425010840047 0 NST{M(Oxidation (M))|F} 4.5049 - 27 NaN NaN 116275.1 NaN 2649 1974 4624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4626 31.518 NaN 81277 35 0 14901 0.261 -1 MCTMCRFV 8 37 532.2124620593496 1062.4103711854991 2 532.2127075195312 MULTI HCD FTMS 0 0 0 4624 22282.9765625 0.5983102610859748 4 -0.08369064331054688 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TMCRFV_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|113|1|anti-sense 2.302733041254933 0.5385759549224092 2 VEEAVA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8 -1 22.396 0 0 2.108 0 0 188.94908075756786 0 188.94908075756786 0 15.406075122407685 0 0 0 0 0 0 0 VEEAVA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.108 - 58 + NaN NaN 92536.7 NaN 2650 1974 4624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4627 31.521 NaN 58172 35 0 13046 0.263 + 23134 RFEEKHAYF 9 31 409.5365808534211 1225.5879131604634 3 409.5362243652344 MULTI HCD FTMS 0 0 0 4624 19664.28515625 0.09328913991055462 27 -0.5750083923339844 3 Unmodified _RFEEKHAYF_ ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 5.40270961882225 0.3100604913328303 2 Y{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1189 0 0 897.443774206086 0 897.443774206086 0 22.870156338638594 0 0 0 0.5 0 0 0 + Y{M(Oxidation (M))|F} 2.1189 + + 3 NaN NaN 98927.2 NaN 2651 1974 4624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4628 31.525 NaN 27017 35 0 5754.1 0.261 + -1 QAEMWWFL 8 17 563.7543093458452 1125.4940657584903 2 563.754150390625 MULTI HCD FTMS 0 0 0 4624 10501.955078125 0.20319787365198624 11 -0.2187213897705078 4 Oxidation (M) _QAEM(Oxidation (M))WWFL_ REV__ENST00000522205.5_1_6:74176314-74183120:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80641.6 NaN 2652 1974 4624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4629 31.528 NaN 32052 35 0 9128.7 0.261 -1 DDRQDFCR 8 22 556.2325074406838 1110.4504619481675 2 556.2326049804688 MULTI HCD FTMS 0 0 0 4624 1912.939453125 0.1679258066006668 -13 0.27056884765625 5 Carbamidomethyl (C) _DDRQDFC(Carbamidomethyl (C))R_ ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88667 NaN 2653 1974 4624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4631 31.534 NaN 117880 35 0 31240 0.327 + 28915 TWLVVLDAN 9 25 515.7810988520138 NaN 0 515.79833984375 PEAK HCD FTMS 0 0 0 4630 2321.22412109375 1 0 0 1 Unmodified _TWLVVLDAN_ REV__ENSG00000123454|ENST00000393056|DBH 7.910154910731844 0.25691533546754686 2 D 1 -1 11.237 0 0 1.0915 0 0 203.0932110378796 708.4025972955686 911.4958083334482 0 0 0 0 0 0 0 0.4247425010840047 0 D 1.0915 + + 3 + NaN NaN 117373.2 NaN 2654 1975 4630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4632 31.538 NaN 52794 35 0 9115.1 0.261 + 26471 STVEEAVATR 10 31 531.7747644468749 1061.5349759605497 2 531.7749633789062 MULTI HCD FTMS 0 0 0 4630 23813.1484375 0.8829233002994413 1 -0.016744613647460938 2 Unmodified _STVEEAVATR_ ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1 11.517880264261096 0.4033776509493788 2 {[MG]|[TS]}VEPCVA 8 4 25.31 0 0 2.3843 0 0 0 272.13581262760005 272.13581262760005 25.310253421807545 0 0 0 0 0.7429928190999391 0 0 0 {[MG]|[TS]}VEPCVA 2.3843 - 37 + NaN NaN 95749.8 NaN 2655 1975 4630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4633 31.541 NaN 48420 35 0 7216.9 0.261 + -1 HVWSPCPTL 9 27 548.7655425074538 1095.5165320817075 2 548.76611328125 MULTI HCD FTMS 0 0 0 4630 22030.580078125 0.5579836883744422 6 -0.1169891357421875 3 Carbamidomethyl (C) _HVWSPC(Carbamidomethyl (C))PTL_ REV__ENST00000576232.1_1_1:1334974-1335722:+|nuORF 2.0597508629832335 0.3354026079994024 2 V 1 -1 6.9897 0 0 0.63803 0 0 321.22455317721375 672.1991060846311 993.4236592618449 0 0 0 0 0 0 0 0 0 V 0.63803 + + 2 + NaN NaN 93955.6 NaN 2656 1975 4630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4634 31.545 NaN 29899 35 0 4830.4 0.261 + -1 FYERCVSCC 9 19 640.7462813414918 1279.4780097497835 2 640.7463989257812 MULTI HCD FTMS 0 0 0 4630 8140.23583984375 0.6100367627659552 1 -0.016744613647460938 4 3 Carbamidomethyl (C) _FYERC(Carbamidomethyl (C))VSC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000164603|ENST00000297145|BMT2 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92232.9 NaN 2657 1975 4630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4636 31.55 NaN 362590 35 0 31081 0.327 + 22377 QPQQVIHGEKL 11 65 426.2384986851515 1275.6936666556546 3 426.2385559082031 MULTI HCD FTMS 0 0 0 4635 150253.140625 0.22366672438090318 -5 0.09363746643066406 1 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 18.85280530406059 0.2928173010335971 2 [QP]QQV{I|L}H 7 4 37.963 0 0 2.9759 0 0 0 442.2306307428344 442.2306307428344 12.786144654057665 0 0 0 0 0 0 0 0.9247425010840047 + [QP]QQV{I|L}H 2.9759 + + 107 + NaN NaN 138083.4 NaN 2658 1976 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4637 31.555 NaN 62321 35 0 6594.1 0.261 + 9261 HPLSDHEATL 10 32 560.275116196647 1118.535679460094 2 560.2750244140625 MULTI HCD FTMS 0 0 0 4635 25468.50390625 0.5692480832437327 21 -0.458465576171875 2 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 6.723162845929126 0.4397169348982109 2 T 1 9 6.9897 0 0 0.6249 0 0 149.10548670014072 865.3573054556412 1014.4627921557819 0 0 0 0 0 0 0 0 0 + T 0.6249 + + 4 + NaN NaN 96111.9 NaN 2659 1976 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4638 31.558 NaN 35133 35 0 6010.5 0.261 + 2507 DSIGSTVSSER 11 22 569.2721548863899 1136.5297568395797 2 569.2719116210938 MULTI HCD FTMS 0 0 0 4635 14488.34375 0.7149170982123969 5 -0.10024452209472656 3 Unmodified _DSIGSTVSSER_ ENSG00000059728|ENST00000264444|MXD1;nc|ENSG00000059728|Q05195-2|MXD1 2.0860074813731053 0.4097721463192591 2 V 1 10 2.4743 0 0 0.2177 0 0 560.2422335014923 474.1953219049438 1034.437555406436 0 0 0 0 0 0 0 0 0 + V 0.2177 + + 2 + NaN NaN 92081 NaN 2660 1976 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4639 31.562 NaN 23513 35 0 6189.1 0.261 + 31350 VWYVVNSTY 9 15 565.7790300609242 1129.5435071886484 2 565.7789306640625 MULTI HCD FTMS 0 0 0 4635 10865.2998046875 0.5936762811479408 5 -0.10024452209472656 4 Unmodified _VWYVVNSTY_ ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91036.7 NaN 2661 1976 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4640 31.565 NaN 16700 35 0 2976.9 0.261 -1 NSGAEAAMNWV 11 18 583.250685204082 1164.4868174749638 2 583.2501220703125 MULTI HCD FTMS 0 0 0 4635 7516.890625 0.6922969479036225 -1 0.016744613647460938 5 Oxidation (M) _NSGAEAAM(Oxidation (M))NWV_ ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;ENST00000542371.1_1_12:6972998-6973244:+|nuORF;nc|ENSG00000111667|P45974-2|USP5 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87925.1 NaN 2662 1976 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4641 31.568 NaN 65408 35 0 10359 0.264 + 21032 PLSFCGPQKLN 11 35 401.8781082251884 NaN 0 401.87823486328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _PLSFCGPQKLN_ ENSG00000221933|ENST00000641663|OR2A25 1.1933415558491238 0.338734977139133 2 H 1 11 5.4846 0 0 0.68408 0 0 514.7207112240112 146.93685327701408 661.6575645010253 0 0 0 0 0 0 0 0 0 H 0.68408 - 5 + NaN NaN 93274.8 NaN 2663 1976 4635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4643 31.574 NaN 463290 35 0 80200 0.327 + 8717 HGYDKDPVL 9 79 522.2618259242886 1042.509098915377 2 522.261474609375 MULTI HCD FTMS 0 0 0 4642 208557.984375 0.8382190310988004 1 -0.023439407348632812 1 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 55.23464941255904 0.024247875903973527 2 {[HG]|PP}YDKDVP{I|L} 9 2 + 48.909 0 0 4.6915 4.6915 81.903 0 0 0 3.445984148897807 18.87227242095669 3.445984148897807 0.08310709285382245 0 1.7218487496163564 0 1.2059771852360797 0 {[HG]|PP}YDKDVP{I|L};{[HG]|PP}YDKDPV{I|L};HGYDKDPV{I|L};{[HG]|PP}YDKD{I|L}[VP];{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]}[PG]DVP{I|L};{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]}[PG]DPV{I|L};{[HG]|PP}YD{[NV]|[RG]}EP{I|L};{[QN]|[E{I|L}]|[KN]}DD[WR]P{I|L};{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]}[PG]D{I|L}[VP];{[QN]|[E{I|L}]|[KN]}QQ[{M(Oxidation (M))|F}E]H{I|L} 4.6915;4.6835;3.5492;2.7376;2.7181;2.7101;1.9717;1.5626;0.76417;0.41678 -;+;+;-;-;-;-;-;-;- + 360 NaN NaN 155645 NaN 2664 1977 4642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4644 31.578 NaN 153650 35 0 24721 0.262 + 20322 NYQKRFQNL 9 51 404.2158799617699 1209.6258104855096 3 404.2156982421875 MULTI HCD FTMS 0 0 0 4642 65229.32421875 0.2383648260013297 8 -0.15847015380859375 2 Unmodified _NYQKRFQNL_ ENSG00000060491|ENST00000290291|OGFR;nc|ENSG00000060491|Q9NZT2-2|OGFR 8.745405648335112 0.2847203663274469 2 {I|L} 1 8 15.485 0 0 1.2801 0 0 1078.531127723594 0 1078.531127723594 0 14.515449934959719 0 0 0 0 0 0 0 + {I|L} 1.2801 + + 4 + NaN NaN 108844.4 NaN 2665 1977 4642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4645 31.582 NaN 58627 35 0 5887 0.261 + -1 MVGQFLGMPAR 11 29 408.2073920422939 NaN 0 408.2190246582031 PEAK HCD FTMS 0 0 0 4642 1859.746826171875 0.3242397914043067 -1 0.023412704467773438 3 Oxidation (M) _MVGQFLGM(Oxidation (M))PAR_ REV__ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;REV__ENSG00000100628|ENST00000555019|ASB2;REV__nc|ENSG00000100628|Q96Q27-1|ASB2 2.843284757254958 0.33405456343542356 2 G 1 -1 5.4846 0 0 0.67345 0 0 476.7345950203316 277.6228121393188 754.3574071596504 0 0 0 0 0 0 0 0 0 G 0.67345 + + 6 + NaN NaN 88871.7 NaN 2666 1977 4642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4646 31.585 NaN 40153 35 0 7277.6 0.261 -1 HPTDVDYRVM 10 20 624.7877100523971 1247.560867171594 2 624.7888793945312 MULTI HCD FTMS 0 0 0 4642 19445.8203125 0.4541298832283577 -5 0.10034751892089844 4 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 13.042465956692817 0.38911719078024076 2 T{[ES]|[DT]|[{I|L}C]} 3 -1 17.447 0 0 1.3985 0 0 912.40532118965 0 912.40532118965 0 17.44727494896694 0 0 0 0.5 0 0.5 0 T{[ES]|[DT]|[{I|L}C]} 1.3985 - 2 NaN NaN 94068.6 NaN 2667 1977 4642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4647 31.588 NaN 32800 35 0 5514.5 0.262 + 11815 KELPDHYR 8 24 529.2750493962903 1056.5355458593806 2 529.2753295898438 MULTI HCD FTMS 0 0 0 4642 16739.69140625 0.6229577139654046 11 -0.22517776489257812 5 Unmodified _KELPDHYR_ ENSG00000188676|ENST00000502986|IDO2;nc|ENSG00000188676|Q6ZQW0-2|IDO2 1.844237919475145 0.5392561982033289 2 Y 1 7 4.6041 0 0 0.43577 0 0 716.2192444451213 174.2376650445922 890.4569094897134 0 0 0 0 0 0 0 0 0 + Y 0.43577 + + 1 + NaN NaN 87174.5 NaN 2668 1977 4642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4648 31.592 NaN 12864 35 0 3126.4 0.261 + 35309 YWKFHFQN 8 14 585.2796968716028 1168.5448408100056 2 585.2664794921875 MULTI HCD FTMS 0 0 0 4642 4332.9228515625 0.36076610758342464 19 -0.42176246643066406 6 Unmodified _YWKFHFQN_ ENST00000524683.5_1_11:121175009-121175207:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108054.4 NaN 2669 1977 4642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4650 31.597 NaN 154980 35 0 17066 0.327 + 21833 QATAEANNL 9 37 466.2275972249134 930.4406415166268 2 466.22735595703125 MULTI HCD FTMS 0 0 0 4649 111351.359375 0.4165633707645806 -5 0.09708404541015625 1 Unmodified _QATAEANNL_ ENSG00000119787|ENST00000378954|ATL2;ENSG00000184743|ENST00000398868|ATL3;ENSG00000198513|ENST00000358385|ATL1;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1 41.95555342248728 0.056367691549927025 2 ASANN{I|L} 6 4 50.992 0 0 5.4804 0 0 342.1539478986344 0 342.1539478986344 0 47.01290421938296 0 0 0 1.25 0 0.3494850021680094 0.3807196863200844 ASANN{I|L} 5.4804 - 117 NaN NaN 105841.5 NaN 2670 1978 4649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4651 31.601 NaN 37132 35 0 4861.4 0.261 + 22381 QPQQVIHGEKL 11 22 638.854303659671 1275.694054386142 2 638.8541870117188 MULTI HCD FTMS 0 0 0 4649 29374.15625 0.5716556329652561 -3 0.06359672546386719 2 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 1.9275035174196113 0.4104672908605315 2 {I|L}H 2 9 10.969 0 0 0.85985 0 0 580.2942263605545 442.22922693424067 1022.5234532947952 0 0 0 0 0 0 0 0 0 + {I|L}H 0.85985 + + 14 + NaN NaN 85508 NaN 2671 1978 4649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4652 31.605 NaN 15740 35 0 5325.2 0.261 + -1 IGKLYVMCIN 10 14 605.8200010325615 1209.625449131923 2 605.820068359375 MULTI HCD FTMS 0 0 0 4649 22762.048828125 0.27398002810006 9 -0.1684417724609375 3 Carbamidomethyl (C) _IGKLYVMC(Carbamidomethyl (C))IN_ REV__ENST00000374479.3_1_1:24172591-24175177:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108537.3 NaN 2672 1978 4649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4653 31.608 NaN 35918 35 0 7933.1 0.262 + 21477 PYEKKAVW 8 24 510.77877086300083 NaN 0 510.77874755859375 PEAK HCD FTMS 0 0 0 4649 9084.1611328125 0.8810890169588813 -7 0.1404895782470703 4 Unmodified _PYEKKAVW_ ENST00000507778.1_1_4:41844266-41844645:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93545 NaN 2673 1978 4649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4655 31.614 NaN 143110 35 0 18745 0.327 -1 LPDDPAKTTM 10 39 552.7656117886296 1103.516670644059 2 552.7656860351562 MULTI HCD FTMS 0 0 0 4654 64819.56640625 0.1929298208245688 8 -0.1517200469970703 1 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 34.221707139014875 0.19555013683537745 2 {I|L}PDD 4 -1 49.24 0 0 4.4621 0 0 0 660.3032771728217 660.3032771728217 33.042359562158126 0 0 0 0 1.305462187404089 0 0.4247425010840047 0 {I|L}PDD 4.4621 + + 34 + NaN NaN 112079.8 NaN 2674 1979 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4656 31.618 NaN 259880 35 0 44223 0.261 -1 KYLEERAMRQF 11 39 496.2538874322882 NaN 0 496.2539978027344 PEAK HCD FTMS 0 0 0 4654 67697.234375 0.7682792743996664 -2 0.0401611328125 2 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 7.846045518447754 0.3198631718753288 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 127606.7 NaN 2675 1979 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4657 31.622 NaN 71173 35 0 15873 0.261 + 8467 HADLSSSAAI 10 18 486.24336838404344 970.4721838348869 2 486.2431640625 MULTI HCD FTMS 0 0 0 4654 47432.37109375 0.0515523722429405 19 -0.41152000427246094 3 Unmodified _HADLSSSAAI_ REV__ENSG00000140395|ENST00000267973|SKIC8;REV__ENST00000559700.5_1_15:78584919-78588040:-|nuORF 6.2057823575117 0.44245551207394906 2 AA{I|L} 3 -1 31.198 0 0 3.2147 0 0 697.3012562482437 0 697.3012562482437 0 31.197887582883936 0 0 0 0.5 0 0 0 AA{I|L} 3.2147 + + 4 NaN NaN 97599.5 NaN 2676 1979 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4658 31.625 NaN 104060 35 0 33563 0.261 -1 SAAAVDAGMAM 11 29 513.715169452032 1025.415785970864 2 513.7152099609375 MULTI HCD FTMS 0 0 0 4654 46249.56640625 0.6370720775255113 25 -0.5476932525634766 4 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 27.628801355627647 0.21662447369784368 2 V 1 -1 15.797 0 0 1.5405 0 0 300.14431487887015 623.1806157109615 923.3249305898316 0 0 0 0 0 0.8807196863200843 0 0 0 V 1.5405 + + 10 + NaN NaN 99942.8 NaN 2677 1979 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4659 31.628 NaN 67143 35 0 5801.5 0.261 + 8933 HPDPDSSVKI 10 31 547.7776690330443 1093.5407851328885 2 547.7782592773438 MULTI HCD FTMS 0 0 0 4654 28539.490234375 0.3313142858438502 -8 0.1572113037109375 5 Unmodified _HPDPDSSVKI_ ENSG00000198589|ENST00000651943|LRBA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;nc|ENSG00000198589|P50851|LRBA 34.93206674587334 0.18938571726943593 2 HPD 3 7 30.674 0 0 2.805 0 0 0 741.3781874507315 741.3781874507315 30.674100046527357 0 0 0 0 0.9247425010840047 0 0 0 + HPD 2.805 + + 8 + NaN NaN 89293.5 NaN 2678 1979 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4660 31.632 NaN 27023 35 0 3683.7 0.261 + 363 AHHMTVELEA 10 22 569.2721548863899 1136.5297568395797 2 570.2933959960938 MULTI HCD FTMS 0 0 0 4654 1957.741455078125 0.3507608960194507 4 -0.08517074584960938 6 Unmodified _AHHMTVELEA_ REV__ENSG00000133059|ENST00000367162|DSTYK;REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK;REV__nc|ENSG00000133059|Q6XUX3-3|DSTYK 1.6526216038709556 0.46655611578153744 2 D{[MG]|[TS]} 3 -1 10.458 0 0 0.92013 0 0 815.4523792951187 0 815.4523792951187 0 6.962724883926656 0 0 0 0 0 0 0 D{[MG]|[TS]} 0.92013 - 3 NaN NaN 93403.7 NaN 2679 1979 4654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4662 31.637 NaN 674070 35 0 51490 0.327 + 8718 HGYDKDPVL 9 85 522.2618259242886 1042.509098915377 2 522.2794189453125 MULTI HCD FTMS 0 0 0 4661 118892.4921875 0.4778428881779796 4 -0.07184410095214844 1 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 28.494509381512117 0.11816142465008336 2 QY{I|L}S{M(Oxidation (M))|F}{I|L} 6 7 47.445 0 0 4.551 0 0 0 288.1350496881469 288.1350496881469 15.655528020725814 0 0 0 0 0 0 1.0189301784845295 0 QY{I|L}S{M(Oxidation (M))|F}{I|L} 4.551 - 861 + NaN NaN 195809.3 NaN 2680 1980 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4663 31.642 NaN 117040 35 0 18881 0.261 + 18438 MPVHAAVQM 9 39 500.2420285111997 998.4695040891994 2 500.2412109375 MULTI HCD FTMS 0 0 0 4661 84861.265625 0.5368685337004769 4 -0.07184410095214844 2 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 44.40701690623563 0.04511410083598184 2 AAVQ{M(Oxidation (M))|F} 5 4 49.464 0 0 4.954 0 0 464.217088767775 0 464.217088767775 0 44.85985638199878 0 0 0 1.5 0 0 0 + AAVQ{M(Oxidation (M))|F} 4.954 + + 54 NaN NaN 104731.6 NaN 2681 1980 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4664 31.645 NaN 177080 35 0 41724 0.261 + 18813 NADPQAVTM 9 41 481.71613286382154 961.4177127944431 2 481.716064453125 MULTI HCD FTMS 0 0 0 4661 69808.3046875 0.06031054697772004 -25 0.5042457580566406 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 43.981846655682396 0.04706587046877104 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 54.205 0 0 5.638 5.638 92.626 0 0 0 4.137342758552691 43.23576872189598 4.137342758552691 54.20486885197654 0 2.1307196863200843 0 0 0.3054621874040891 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 5.638 + + 54 NaN NaN 106395.9 NaN 2682 1980 4661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4666 31.65 NaN 135560 35 0 20074 0.327 + 32869 WYDSLYRVF 9 51 416.8738287157579 NaN 0 416.86053466796875 PEAK HCD FTMS 0 0 0 4665 1077.6319580078125 0.852586076516365 1 -0.021907806396484375 1 Unmodified _WYDSLYRVF_ REV__ENSG00000188869|ENST00000359440|TMC3;REV__ENST00000559982.1_1_15:81630174-81666445:-|nuORF;REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3;REV__TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant 6.2057823575117 0.2651744870083793 2 DVWV 4 -1 17.423 0 0 2.0948 0 0 167.45011596511284 162.02285181217033 329.4729677772832 0 0 0 0 0 0 0 0 0 DVWV 2.0948 - 50 + NaN NaN 101819.2 NaN 2683 1981 4665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4667 31.655 NaN 52257 35 0 9622.5 0.261 + 33841 YLKQPMRYM 9 22 410.5438369822217 1228.6096815468652 3 410.54345703125 MULTI HCD FTMS 0 0 0 4665 12888.056640625 0.5847080254586531 -1 0.013322830200195312 2 Unmodified _YLKQPMRYM_ ENST00000238508.7_1_18:61585232-61587031:+|nuORF 1.1933415558491238 0.3419706357095994 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 3 6 8.072 0 0 0.657 0 0 0 834.4299995002433 834.4299995002433 3.4678748622465623 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 0.657 - 6 NaN NaN 97673.8 NaN 2684 1981 4665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4668 31.664 NaN 81095 35 0 5845.6 0.261 + 3109 EALNDYKT 8 41 477.232216357922 952.4498797826441 2 477.2185974121094 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EALNDYKT_ ENSG00000143033|ENST00000370298|MTF2;nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2 1.844237919475145 0.5392561982033289 2 D 1 7 4.6041 0 0 0.48339 0 0 410.2167387687753 424.18312758503345 834.3998663538088 0 0 0 0 0 0 0 0 0 + D 0.48339 + + 12 + NaN NaN 95624.6 NaN 2685 1981 4665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4669 31.667 NaN 33573 35 0 6602.9 0.261 + -1 RCCMPYPY 8 25 524.7059274228509 NaN 0 524.7064208984375 PEAK HCD FTMS 0 0 0 4665 2716.99072265625 0.2654710792661842 6 -0.11504936218261719 4 Oxidation (M) _RCCM(Oxidation (M))PYPY_ REV__ENST00000519716.6_1_19:17712688-17712913:-|nuORF 0.7936320650641473 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.66734 0 0 163.91458814472668 767.3775118463499 931.2920999910766 0 0 0 0 0 0 0 0 0 {I|L} 0.66734 - 1 + NaN NaN 83932.1 NaN 2686 1981 4665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4671 31.672 NaN 49796 35 0 10679 0.326 + 23135 RFEEKHAYF 9 30 409.5365808534211 1225.5879131604634 3 409.53643798828125 MULTI HCD FTMS 0 0 0 4670 13786.4541015625 0.065404179980696 35 -0.7385463714599609 1 Unmodified _RFEEKHAYF_ ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 3.5870582119611467 0.32382448100160255 2 Y{M(Oxidation (M))|F} 2 7 25.217 0 0 2.0575 0 0 897.4481894595154 0 897.4481894595154 0 23.226825097560422 0 0 0 0.4247425010840047 0 0 0 + Y{M(Oxidation (M))|F} 2.0575 + + 3 NaN NaN 95928.9 NaN 2687 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4672 31.677 NaN 27149 35 0 4527.3 0.261 -1 QATSYEIRM 9 21 557.7634427366127 1113.5123325400252 2 557.7637939453125 MULTI HCD FTMS 0 0 0 4670 14118.04296875 0.6413031896512642 -3 0.0585784912109375 2 Oxidation (M) _QATSYEIRM(Oxidation (M))_ ENSG00000137975|ENST00000370565|CLCA2 3.5964929083625545 0.32375295897743744 2 {I|L}[R{M(Oxidation (M))|F}] 3 -1 10.458 0 0 0.93915 0 0 679.2809310281096 0 679.2809310281096 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}[R{M(Oxidation (M))|F}] 0.93915 + + 5 + NaN NaN 89599.5 NaN 2688 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4673 31.68 NaN 12853 35 0 5564 0.261 + 28635 TRKVSRDYW 9 11 605.8200010325615 1209.625449131923 2 605.8204956054688 MULTI HCD FTMS 0 0 0 4670 5926.0400390625 0.07132998565657536 13 -0.29311180114746094 3 Unmodified _TRKVSRDYW_ ENST00000367837.9_1_6:135307892-135307943:-|nuORF 0.26902006276349055 0.3489776809129786 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87772.7 NaN 2689 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4674 31.684 NaN 21562 35 0 4760 0.261 + -1 RCRCCRCC 8 10 530.199214268428 1058.383875603656 2 530.1991577148438 MULTI HCD FTMS 0 0 0 4670 5813.76318359375 0.5554259915726448 1 -0.026592254638671875 4 Carbamidomethyl (C) _RCRC(Carbamidomethyl (C))CRCC_ REV__ENST00000569981.2_1_16:29820228-29821657:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82389.6 NaN 2690 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4675 31.687 NaN 25030 35 0 5828.9 0.261 + 18623 MWYPHFVI 8 18 546.7700108789669 1091.5254688247337 2 546.769775390625 MULTI HCD FTMS 0 0 0 4670 8036.634765625 0.09598568588120436 23 -0.5156421661376953 5 Unmodified _MWYPHFVI_ REV__ENSG00000092439|ENST00000646667|TRPM7 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106667.8 NaN 2691 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4676 31.69 NaN 32716 35 0 5841.4 0.261 -1 YLAFYIIM 8 28 525.2740857853822 NaN 0 525.274169921875 PEAK HCD FTMS 0 0 0 4670 5599.4970703125 0.5623635868257165 -2 0.03523063659667969 6 Oxidation (M) _YLAFYIIM(Oxidation (M))_ ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1 11.114462752807354 0.38822285293237185 2 {I|L} 1 -1 15.485 0 0 1.4768 0 0 165.0458698957047 767.3824400089112 932.4283099046158 0 0 0 0 0 1 0 0 0 {I|L} 1.4768 + + 2 NaN NaN 87575.4 NaN 2692 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4677 31.694 NaN 30526 35 0 7894.7 0.261 + 20777 PGRFCACKIH 10 21 566.2811889648438 NaN 0 566.2811889648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PGRFCACKIH_ ENST00000601797.1_1_19:7701639-7701840:-|nuORF 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86220.8 NaN 2693 1982 4670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4679 31.699 NaN 1152400 35 0 101230 0.327 + 22378 QPQQVIHGEKL 11 86 426.2384986851515 1275.6936666556546 3 426.2386779785156 MULTI HCD FTMS 0 0 0 4678 574393.9375 0.8550424301979492 2 -0.033138275146484375 1 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 31.44599026986405 0.19204057578885542 2 [QP]QQV{I|L}H{[DA]|[EG]}K{I|L} 11 0 + 54.016 0 0 4.2342 4.2342 84.987 0 0 0 19.881073231970944 10.740091109764158 10.740091109764158 9.128498242810998 0 0.8807196863200843 0 0 0.9247425010840047 + + [QP]QQV{I|L}H{[DA]|[EG]}K{I|L};[QP]Q[AG]V{I|L}H{[DA]|[EG]}K{I|L};[QP][AG]QV{I|L}H{[DA]|[EG]}K{I|L};[QP]QQV{I|L}[KT]P[HT];[QP]Q[AG]V{I|L}[KT]P[HT];[QP][AG]QV{I|L}[KT]P[HT] 4.2342;3.5187;3.5187;3.2777;2.5621;2.5621 +;-;-;-;-;- + 475 + NaN NaN 263843.5 NaN 2694 1983 4678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4680 31.703 NaN 162620 35 0 18204 0.261 + 2943 DYTSVMHY 8 50 508.2119103238869 NaN 0 508.2126770019531 PEAK HCD FTMS 0 0 0 4678 25428.435546875 0.5330509498149992 255 -6.040407180786133 2 Unmodified _DYTSVMHY_ ENSG00000141434|ENST00000269202|MEP1B 5.760428011301431 0.38822285293237185 2 TE 2 7 15.217 0 0 1.5 0 0 148.98328701031772 632.3156231510544 781.2989101613721 0 0 0 0 0 0 0 0.4247425010840047 0 TE 1.5 - 17 + NaN NaN 100853.8 NaN 2695 1983 4678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4682 31.709 NaN 136610 35 0 22114 0.327 + 576 APEERPAAL 9 42 477.2562390677826 952.4979252023652 2 477.2559814453125 MULTI HCD FTMS 0 0 0 4681 54036.30078125 0.19172338276651052 -6 0.11191368103027344 1 Unmodified _APEERPAAL_ ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF 22.65808497894818 0.16459551161911185 2 APEER 5 4 36.287 0 0 3.8096 0 0 0 367.19870935611567 367.19870935611567 15.31743128760553 0 0 0 0 0.5 0 0.3494850021680094 0 + APEER 3.8096 + + 27 + NaN NaN 104438.2 NaN 2696 1984 4681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4683 31.713 NaN 60698 35 0 10793 0.261 -1 HPTDVDYRVM 10 31 624.7877100523971 1247.560867171594 2 624.7872924804688 MULTI HCD FTMS 0 0 0 4681 39368.25390625 0.9193904017439299 2 -0.03980827331542969 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 13.042465956692817 0.38911719078024076 2 HP 2 -1 24.464 0 0 1.9609 0 0 0 1010.4268996325769 1010.4268996325769 22.870156338638594 0 0 0 0 0.5 0 0 0 HP 1.9609 + + 4 + NaN NaN 89098.6 NaN 2697 1984 4681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4684 31.717 NaN 67429 35 0 5384.6 0.263 + 25064 SAASEQHVF 9 29 488.2302615313267 974.4459701294534 2 488.2301330566406 MULTI HCD FTMS 0 0 0 4681 34839.046875 0.39377970137755847 -5 0.09519195556640625 3 Unmodified _SAASEQHVF_ ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 11.494710602746466 0.2610445893512368 2 {[SA]|[TG]}A[HV]T 6 4 11.642 0 0 1.1947 0 0 0 405.16452966861567 405.16452966861567 9.16772480037345 0 0 0 0 0.6747425010840047 0 0 0 {[SA]|[TG]}A[HV]T 1.1947 - 7 + NaN NaN 95356.4 NaN 2698 1984 4681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4685 31.72 NaN 151680 35 0 18261 0.261 + 34879 YSEKFDLN 8 46 508.2384123901676 NaN 0 508.24755859375 PEAK HCD FTMS 0 0 0 4681 4211.42333984375 0.3339107831681613 10 -0.23316574096679688 4 Unmodified _YSEKFDLN_ ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 15.847184025352803 0.3871869056683869 2 TEKKE 5 6 12.58 0 0 1.2401 0 0 149.03562734448525 247.07558618717033 396.1112135316556 0 0 0 0 0 0 0 0.6382104921644451 0 TEKKE 1.2401 - 17 + NaN NaN 109644.1 NaN 2699 1984 4681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4686 31.723 NaN 87086 35 0 16045 0.261 + 9692 HVTQEDFEM 9 25 576.2374246596213 1150.4602963860425 2 576.2376098632812 MULTI HCD FTMS 0 0 0 4681 32398.791015625 0.11642954407732432 -6 0.11191368103027344 5 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 47.594388314883695 0.03493607795751234 2 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 4 65.191 0 0 5.6665 0 0 465.23496787217374 0 465.23496787217374 0 65.19077524932108 0 0 0 2.4247425010840047 0 0.75 0 + ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.6665 + + 29 + NaN NaN 95228.1 NaN 2700 1984 4681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4687 31.727 NaN 62145 35 0 9215.3 0.261 + 9501 HPYPHPFKP 9 33 560.2919604387042 NaN 0 560.2750244140625 PEAK HCD FTMS 0 0 0 4681 2354.683349609375 1 0 0 6 Unmodified _HPYPHPFKP_ REV__CSMD3|p.N1603K|1|0.1|ENSG00000164796|chr8:112506777-112506777|G/C|missense_variant 2.302733041254933 0.2840881193086663 2 P 1 -1 5.4846 0 0 0.49032 0 0 137.08995007487084 881.4026583307249 1018.4926084055958 0 0 0 0 0 0 0 0 0 P 0.49032 + + 1 + NaN NaN 87062.2 NaN 2701 1984 4681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4689 31.732 NaN 305910 35 0 38700 0.327 + 21834 QATAEANNL 9 52 466.2275972249134 930.4406415166268 2 466.2274169921875 MULTI HCD FTMS 0 0 0 4688 231128.984375 0.864649244993953 2 -0.03341102600097656 1 Unmodified _QATAEANNL_ ENSG00000119787|ENST00000378954|ATL2;ENSG00000184743|ENST00000398868|ATL3;ENSG00000198513|ENST00000358385|ATL1;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1 83.42873516780209 0.004742894019233849 2 EANN{I|L} 5 4 65.516 0 0 7.0414 0 0 371.17973525215 0 371.17973525215 0 56.219574197010914 0 0 0 1.6989700043360187 0 1.3996498648046138 0.3807196863200844 + EANN{I|L} 7.0414 + + 173 NaN NaN 134894.5 NaN 2702 1985 4688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4690 31.736 NaN 84310 35 0 11226 0.261 + 11969 KFQCSPFKIL 10 34 404.22801915083465 NaN 0 404.21551513671875 PEAK HCD FTMS 0 0 0 4688 1476.0592041015625 0.8357259330150419 3 -0.06670761108398438 2 Unmodified _KFQCSPFKIL_ ENST00000370035.7_1_1:109179974-109180055:+|nuORF 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95518.9 NaN 2703 1985 4688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4691 31.74 NaN 22312 35 0 2588.8 0.261 -1 TEEEEEEE 8 21 533.1908842748642 NaN 0 533.1912231445312 PEAK HCD FTMS 0 0 0 4688 9679.712890625 0.5370550776928972 200 -4.639856338500977 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TEEEEEEE_ ABCF1|p.S140T|1|0.78|ENSG00000204574|chr6:30578507-30578507|G/C|missense_variant;ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant;ENSG00000054523|ENST00000676179|KIF1B;ENSG00000100813|ENST00000605057|ACIN1;ENSG00000105393|ENST00000598188|BABAM1;ENSG00000120645|ENST00000538872|IQSEC3;ENSG00000130175|ENST00000677123|PRKCSH;ENSG00000147166|ENST00000373829|ITGB1BP2;ENSG00000147394|ENST00000695776|ZNF185;ENSG00000167670|ENST00000301280|CHAF1A;ENSG00000174446|ENST00000316634|SNAPC5;ENSG00000183304|ENST00000381003|FAM9A;ENSG00000197520|ENST00000445590|FAM177B;ENSG00000224089|ENST00000430448|CT47A10;ENSG00000225830|ENST00000355832|ERCC6;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236446|ENST00000371311|CT47B1;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000242362|ENST00000458218|CT47A2;ENST00000448635.2_1_19:17378325-17387315:+|nuORF;ENST00000568875.1_1_15:66786776-66787321:-|nuORF;ENST00000585325.5_1_19:11557144-11558756:+|nuORF;ENST00000585540.1_1_19:11558256-11559107:+|nuORF;ENST00000592445.1_1_19:11558256-11558487:+|nuORF;ENST00000592937.1_1_19:2477660-2478092:+|nuORF;ENST00000595393.5_1_19:17378325-17387472:+|nuORF;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000120645|Q9UPP2-2|IQSEC3;nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000174446|O75971-2|SNAPC5;nc|ENSG00000182606|Q9UPV9-2|TRAK1;nc|ENSG00000197520|A6PVY3-2|FAM177B;nc|ENSG00000225830|P0DP91|ERCC6;nc|ENSG00000269307|Q9NWV8-3|BABAM1;REV__ENSG00000008128|ENST00000404249|CDK11A;REV__ENSG00000029559|ENST00000226284|IBSP;REV__ENSG00000100353|ENST00000216190|EIF3D;REV__ENSG00000119041|ENST00000263956|GTF3C3;REV__ENSG00000120645|ENST00000538872|IQSEC3;REV__ENSG00000131116|ENST00000300811|ZNF428;REV__ENSG00000133706|ENST00000394434|LARS1;REV__ENSG00000174348|ENST00000312553|PODN;REV__ENSG00000181378|ENST00000341552|CFAP65;REV__ENSG00000198835|ENST00000366714|GJC2;REV__ENSG00000198838|ENST00000634891|RYR3;REV__ENSG00000198853|ENST00000361226|RUSC2;REV__ENSG00000248333|ENST00000341832|CDK11B;REV__ENST00000462641.1_1_22:36907036-36908721:-|nuORF;REV__ENST00000598846.1_1_1:1636463-1654047:-|nuORF;REV__nc|ENSG00000008128|Q9UQ88-3|CDK11A;REV__nc|ENSG00000008128|Q9UQ88-4|CDK11A;REV__nc|ENSG00000008128|Q9UQ88-9|CDK11A;REV__nc|ENSG00000008128|Q9UQ88|CDK11A;REV__nc|ENSG00000100353|O15371-2|EIF3D;REV__nc|ENSG00000100353|O15371-3|EIF3D;REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3;REV__nc|ENSG00000124313|Q5JU85-4|IQSEC2;REV__nc|ENSG00000133706|Q9P2J5-2|LARS1;REV__nc|ENSG00000174348|Q7Z5L7-2|PODN;REV__nc|ENSG00000174348|Q7Z5L7-3|PODN;REV__nc|ENSG00000174348|Q7Z5L7-4|PODN;REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198838|Q15413-3|RYR3;REV__nc|ENSG00000248333|P21127-10|CDK11B;REV__nc|ENSG00000248333|P21127-3|CDK11B;REV__nc|ENSG00000248333|P21127-5|CDK11B;REV__nc|ENSG00000248333|P21127-6|CDK11B;REV__nc|ENSG00000248333|P21127-8|CDK11B;REV__nc|ENSG00000248333|P21127-9|CDK11B;REV__nc|ENSG00000248333|P21127|CDK11B 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103210.2 NaN 2704 1985 4688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4692 31.743 NaN 63002 35 0 10867 0.263 + 7323 FTYPPLFYR 9 31 401.8781082251884 NaN 0 401.8783874511719 PEAK HCD FTMS 0 0 0 4688 1147.0523681640625 0.22371687906071724 1 -0.016691207885742188 4 Unmodified _FTYPPLFYR_ REV__ENSG00000023608|ENST00000216294|SNAPC1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93584.9 NaN 2705 1985 4688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4694 31.749 NaN 234860 35 0 40346 0.327 -1 KYLEERAMRQF 11 38 496.2538874322882 NaN 0 496.25372314453125 PEAK HCD FTMS 0 0 0 4693 62933.96875 0.7142221435296452 5 -0.11673927307128906 1 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 4.603747607663779 0.32906063731547947 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114322.8 NaN 2706 1986 4693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4695 31.753 NaN 174480 35 0 16705 0.261 + 33007 YAVTEAGFAA 10 51 500.2420285111997 998.4695040891994 2 500.2435607910156 MULTI HCD FTMS 0 0 0 4693 60508.0234375 0.3827995444182337 10 -0.24660110473632812 2 Unmodified _YAVTEAGFAA_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 30.636539890814138 0.2266618088935899 2 YAVTG[{I|L}T]Q{M(Oxidation (M))|F} 9 6 + 78.382 0 0 7.8502 7.8502 90.769 0 0 0 71.39252201045579 14.973024840566467 14.973024840566467 8.766734124050544 0 2.1307196863200843 1.6989700043360187 0 0.3252574989159953 YAVTG[{I|L}T]Q{M(Oxidation (M))|F};YAVTG[WR]{M(Oxidation (M))|F};YAVTG[{I|L}T][AG]{M(Oxidation (M))|F};YAVTG{[CA]|SS}V{[ES]|[DT]|[{I|L}C]};YAV[KC]TV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[CA]|SS}VVQ{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HQ]GTV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[CA]|SS}[EC][K{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}][TP][K{I|L}] 7.8502;6.9722;6.6023;5.5734;5.356;4.6488;2.7678;2.7435;1.9925 -;-;-;-;-;-;-;-;- 144 + NaN NaN 118961.3 NaN 2707 1986 4693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4696 31.757 NaN 24115 35 0 4418.6 0.261 + 22382 QPQQVIHGEKL 11 19 638.854303659671 1275.694054386142 2 638.8541259765625 MULTI HCD FTMS 0 0 0 4693 28815.884765625 0.5607910131936893 5 -0.11673927307128906 3 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 0.8449412413469082 0.4152150412513042 2 {I|L}H 2 9 10.969 0 0 0.85985 0 0 580.2988039972732 442.2302645318969 1022.5290685291702 0 0 0 0 0 0 0 0 0 + {I|L}H 0.85985 + + 4 + NaN NaN 88386.6 NaN 2708 1986 4693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4697 31.76 NaN 35615 35 0 6788.3 0.262 + 34926 YSLEYIQF 8 21 531.7603301690941 1061.5061074049881 2 531.7599487304688 MULTI HCD FTMS 0 0 0 4693 16852.974609375 0.510905811972573 -5 0.09832954406738281 4 Unmodified _YSLEYIQF_ ENSG00000179409|ENST00000319004|GEMIN4 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87621 NaN 2709 1986 4693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4699 31.765 NaN 464160 35 0 44233 0.326 + 8719 HGYDKDPVL 9 72 522.2618259242886 1042.509098915377 2 522.2794189453125 MULTI HCD FTMS 0 0 0 4698 37345.8203125 0.15009723752243012 11 -0.2597999572753906 1 Unmodified _HGYDKDPVL_ ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 20.453626601364224 0.18364154288633264 2 QY{I|L}S{M(Oxidation (M))|F}K 6 8 43.423 0 0 4.1652 0 0 0 273.12400232486567 273.12400232486567 13.4176003468815 0 0 0 0 0 0 1.0044321917401078 0.3252574989159953 QY{I|L}S{M(Oxidation (M))|F}K 4.1652 - 649 + NaN NaN 150480.8 NaN 2710 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4700 31.77 NaN 124020 35 0 9421.4 0.261 + 20788 PHDKKEDLL 9 38 547.7962331530613 NaN 0 547.777587890625 PEAK HCD FTMS 0 0 0 4698 3931.308837890625 0.6426958737470184 3 -0.07668304443359375 2 Unmodified _PHDKKEDLL_ ENSG00000131931|ENST00000254250|THAP1 4.75600775471527 0.27219989241163056 2 D 1 8 10.485 0 0 0.95874 0 0 744.4398956500694 231.08909021549064 975.52898586556 0 0 0 0 0 0 0 0.5 0 + D 0.95874 + + 27 + NaN NaN 102197.7 NaN 2711 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4701 31.773 NaN 104780 35 0 12140 0.261 + 34662 YPSQDNDRL 9 42 554.2567881791995 1106.4990234251989 2 554.2569580078125 MULTI HCD FTMS 0 0 0 4698 46110.48046875 0.753697797031955 -2 0.03341102600097656 3 Unmodified _YPSQDNDRL_ ENSG00000146070|ENST00000274793|PLA2G7 32.037481411007896 0.10189719824197178 2 YPSQD[DN][R{I|L}] 9 0 + 65.454 0 0 5.9154 5.9154 88.397 0 0 0 47.49545604461879 7.732646631054152 7.732646631054152 9.208187539523749 0 1.086696871556164 1.5228787452803376 0.3494850021680094 0 + + YPSQD[DN][R{I|L}];YPS[AG]D[DN][R{I|L}];YPSQD[KQ]{[QN]|[E{I|L}]|[KN]};YPS[AG]D[KQ]{[QN]|[E{I|L}]|[KN]} 5.9154;5.0832;4.6457;3.8135 +;-;-;- + 59 + NaN NaN 99579.8 NaN 2712 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4702 31.777 NaN 83759 35 0 23403 0.261 -1 SAAAVDAGMAM 11 31 513.715169452032 1025.415785970864 2 513.715087890625 MULTI HCD FTMS 0 0 0 4698 30385.85546875 0.41855484440283347 33 -0.7021026611328125 4 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 17.11289562659939 0.30797719109864646 2 V 1 -1 9.6041 0 0 0.9366 0 0 626.2048621075859 297.11948572330317 923.3243478308891 0 0 0 0 0 0.5 0 0 0 V 0.9366 + + 7 + NaN NaN 99895 NaN 2713 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4703 31.78 NaN 27811 35 0 6253.4 0.261 + 8503 HAEQGELLSR 10 24 570.2938449930249 1138.5731370528497 2 570.2935180664062 MULTI HCD FTMS 0 0 0 4698 19061.814453125 0.020510059217696688 59 -1.2163162231445312 5 Unmodified _HAEQGELLSR_ REV__CON__P19001 7.101721422024254 0.4377131641736035 2 HA 2 -1 25.969 0 0 2.2808 0 0 0 927.4516695611936 927.4516695611936 25.969100130080562 0 0 0 0 0.5 0 0 0 HA 2.2808 + + 4 + NaN NaN 91115.6 NaN 2714 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4704 31.783 NaN 50064 35 0 12846 0.261 + 19057 NEEQPHELSP 10 27 590.2674888038351 1178.5204246744702 2 590.2675170898438 MULTI HCD FTMS 0 0 0 4698 21709.99609375 0.36458938357319126 -5 0.09314155578613281 6 Unmodified _NEEQPHELSP_ REV__ENSG00000137275|ENST00000259808|RIPK1;REV__nc|ENSG00000137275|Q13546-2|RIPK1 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91006.4 NaN 2715 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4705 31.787 NaN 25510 35 0 4622.4 0.261 + 3218 EDFVLNKR 8 18 510.77877086300083 NaN 0 510.7789611816406 PEAK HCD FTMS 0 0 0 4698 5628.44970703125 0.5459133922072215 1 -0.03329658508300781 7 Unmodified _EDFVLNKR_ tr|U7SJJ3|U7SJJ3_FUSNUCRISPR-associatedendonucleaseCas1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=cas1PE=3SV=1 2.302733041254933 0.38822285293237185 2 V 1 7 3.0989 0 0 0.30395 0 0 529.3341397711205 388.1180513971313 917.4521911682518 0 0 0 0 0 0 0 0 0 + V 0.30395 + + 1 + NaN NaN 94625.1 NaN 2716 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4706 31.79 NaN 28745 35 0 5927.1 0.262 + 9667 HVFQIDPATKR 11 25 437.91020796667823 NaN 0 437.9097900390625 PEAK HCD FTMS 0 0 0 4698 7585.83740234375 0.6679481356537328 -1 0.016719818115234375 8 Unmodified _HVFQIDPATKR_ ENSG00000051128|ENST00000392351|HOMER3;ENST00000599808.1_1_19:19049437-19049791:-|nuORF;nc|ENSG00000051128|Q9NSC5-2|HOMER3;nc|ENSG00000051128|Q9NSC5-3|HOMER3;nc|ENSG00000051128|Q9NSC5-4|HOMER3;nc|ENSG00000051128|Q9NSC5-5|HOMER3 1.1097533296519684 0.33897209286470975 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87549 NaN 2717 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4707 31.793 NaN 9995.6 35 0 4502.8 0.261 + 33334 YFWWLLLPV 9 7 618.8423867728266 NaN 0 618.8429565429688 PEAK HCD FTMS 0 0 0 4698 2229.961669921875 0.41575690060313025 -1 0.016719818115234375 9 Unmodified _YFWWLLLPV_ ENSG00000141469|ENST00000321925|SLC14A1;nc|ENSG00000141469|Q13336-2|SLC14A1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102113.8 NaN 2718 1987 4698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4709 31.799 NaN 276250 35 0 29131 0.327 + 25078 SADMSHVAL 9 46 473.7187324530392 945.4229119728784 2 473.7184753417969 MULTI HCD FTMS 0 0 0 4708 199997.984375 0.6008855170108649 -4 0.08982467651367188 1 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 78.14939416004806 0.006451203201226903 2 {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 9 0 + 61.934 0 0 6.5509 6.5509 91.116 0 0 0 5.6424927368725974 56.247293946369794 5.6424927368725974 12.513487579716767 0 2.274227503252014 0 1.110924374808178 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]SA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]{I|L}{[SA]|[TG]} 6.5509;5.2273;1.8072 +;-;- + 74 NaN NaN 125070 NaN 2719 1988 4708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4710 31.803 NaN 207820 35 0 59209 0.261 + 18814 NADPQAVTM 9 33 481.71613286382154 961.4177127944431 2 481.7158508300781 MULTI HCD FTMS 0 0 0 4708 114065.2109375 0.09854608693858549 -17 0.3422279357910156 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 51.41523569358685 0.02959097413485123 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 58.579 0 0 6.093 6.093 93.505 0 0 0 48.09439983606076 7.833552777739072 7.833552777739072 58.57894990110104 0 2.5 0 0.4247425010840047 0 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 6.093 + + 81 + NaN NaN 112697.2 NaN 2720 1988 4708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4711 31.807 NaN 49863 35 0 17265 0.261 -1 0 27 406.99611381902304 NaN 0 406.99615478515625 PEAK HCD FTMS 0 0 0 4708 25669.021484375 0.609744441170008 5 -0.11666107177734375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89559.7 NaN 2721 1988 4708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4712 31.81 NaN 15562 35 0 4423.9 0.261 + -1 GCCDCFAGQM 10 16 603.1951904296875 NaN 0 603.1951904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 3 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))DC(Carbamidomethyl (C))FAGQM_ REV__DGKE|p.L82M|1|0.34|ENSG00000153933|chr17:56835039-56835039|C/A|missense_variant 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87533 NaN 2722 1988 4708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4714 31.815 NaN 297020 35 0 47664 0.327 -1 HMDAATPEL 9 47 500.7239044168945 999.4332559005891 2 500.723876953125 MULTI HCD FTMS 0 0 0 4713 136545.390625 0.8169360088815998 -3 0.06670761108398438 1 Oxidation (M) _HM(Oxidation (M))DAATPEL_ ENSG00000172059|ENST00000305883|KLF11;nc|ENSG00000172059|O14901-2|KLF11 25.399314129420986 0.14091189997036632 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[DG]{[{M(Oxidation (M))|F}D]|MM}{I|L} 9 -1 + 40.893 0 0 4.0916 4.0916 87.295 0 0 0 11.640749640939916 7.476884018817245 7.476884018817245 12.486512420283226 0 0 1.5228787452803376 0.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[DG]{[{M(Oxidation (M))|F}D]|MM}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[RD][{M(Oxidation (M))|F}E];[{M(Oxidation (M))|F}E][HQ][TP]E{I|L} 4.0916;2.8423;2.1271 -;-;- 83 NaN NaN 126769 NaN 2723 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4715 31.82 NaN 114440 35 0 17022 0.261 -1 HPTDVDYRVM 10 40 416.8607560176436 1247.5604386531309 3 416.8606872558594 MULTI HCD FTMS 0 0 0 4713 31307.74609375 0.7217683668681789 2 -0.05003166198730469 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 22.774965066868997 0.29808267786580567 2 DVWV{M(Oxidation (M))|F} 5 -1 48.443 0 0 3.883 0 0 583.2795681470747 0 583.2795681470747 0 48.44335023848103 0 0 0 1.5 0 0 0 DVWV{M(Oxidation (M))|F} 3.883 - 52 + NaN NaN 94920.6 NaN 2724 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4716 31.823 NaN 83964 35 0 10738 0.261 -1 FPCQRRAQF 9 33 403.86945441255455 1208.5865338378637 3 404.2157897949219 MULTI HCD FTMS 0 0 0 4713 2297.261962890625 0.1340311035385658 -1 0.016691207885742188 3 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))QRRAQF_ CON__Q2UVX4 4.897010918128616 0.31389406404703984 2 ED 2 -1 22.959 0 0 1.8996 0 0 0 961.4418340497589 961.4418340497589 9.463950151760656 0 0 0 0 0 0 0.5 0 ED 1.8996 - 7 + NaN NaN 94230.9 NaN 2725 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4717 31.827 NaN 68436 35 0 17115 0.261 -1 MVISEKEAM 9 23 527.251369701805 1052.4881864704098 2 527.2515258789062 MULTI HCD FTMS 0 0 0 4713 30234.603515625 0.5757485176261399 -3 0.06670761108398438 4 Oxidation (M) _MVISEKEAM(Oxidation (M))_ ENSG00000115548|ENST00000312912|KDM3A 22.736283301280096 0.1639198954644489 2 S{I|L}[DP] 4 -1 26.198 0 0 2.4891 0 0 622.2641468732437 0 622.2641468732437 0 8.098943791441968 0 0 0 1 0 0 0 S{I|L}[DP] 2.4891 - 7 NaN NaN 99032.5 NaN 2726 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4718 31.83 NaN 62051 35 0 7046.1 0.263 + 7055 FQHSERIYF 9 36 409.5365808534211 1225.5879131604634 3 409.53662109375 MULTI HCD FTMS 0 0 0 4713 9935.75390625 0.047136111428001504 42 -0.8367805480957031 5 Unmodified _FQHSERIYF_ ENSG00000019485|ENST00000683152|PRDM11;nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11 4.897010918128616 0.31389406404703984 2 {M(Oxidation (M))|F} 1 8 19.604 0 0 1.5996 0 0 1060.5091453155399 0 1060.5091453155399 0 3.406206186877938 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.5996 + + 13 + NaN NaN 102822.2 NaN 2727 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4719 31.833 NaN 29607 35 0 5961.9 0.261 + 359 AHDNVDRVTI 10 24 570.2938449930249 1138.5731370528497 2 570.3193969726562 MULTI HCD FTMS 0 0 0 4713 10876.37890625 0.011702725151892537 61 -1.2696533203125 6 Unmodified _AHDNVDRVTI_ REV__ENSG00000166341|ENST00000299441|DCHS1 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86086.9 NaN 2728 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4720 31.837 NaN 14134 35 0 4603.1 0.261 -1 WIKMRLCD 8 11 582.2879994373832 NaN 0 582.2872314453125 PEAK HCD FTMS 0 0 0 4713 8448.3642578125 1 0 0 7 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))WIKMRLC(Carbamidomethyl (C))D_ chr1:9751662-9773272|426|14.75|0.42|5.15|-|0|None,CLSTN1|1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90133.2 NaN 2729 1989 4713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4722 31.842 NaN 280540 35 0 21412 0.327 + 22379 QPQQVIHGEKL 11 67 426.2384986851515 1275.6936666556546 3 426.23834228515625 MULTI HCD FTMS 0 0 0 4721 96585.0546875 0.14377644764191447 9 -0.19977569580078125 1 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 14.824719086485123 0.32791414831367477 2 [QP]QQV{I|L}G 7 4 34.341 0 0 2.6919 0 0 0 522.2688692682249 522.2688692682249 11.06955398090193 0 0 0 0 0 0 0 0.5 [QP]QQV{I|L}G 2.6919 - 154 + NaN NaN 133018.1 NaN 2730 1990 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4723 31.847 NaN 63888 35 0 11705 0.261 + 14096 KYYKEVQTV 9 30 579.3137494631218 1156.6129459930435 2 579.3134765625 MULTI HCD FTMS 0 0 0 4721 14793.41796875 0.6923627142829066 1 -0.023336410522460938 2 Unmodified _KYYKEVQTV_ ENSG00000112159|ENST00000369393|MDN1 3.2813086475875832 0.32614229037259 2 KY{I|L} 3 7 26.198 0 0 2.2651 0 0 0 749.3507784479124 749.3507784479124 26.197887582883936 0 0 0 0 0 0 0 0 KY{I|L} 2.2651 - 4 + NaN NaN 98242.3 NaN 2731 1990 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4724 31.85 NaN 22294 35 0 6090.5 0.261 + 32526 WHCLRRED 8 15 557.7634427366127 1113.5123325400252 2 557.7638549804688 MULTI HCD FTMS 0 0 0 4721 7496.3173828125 0.3405154849632475 5 -0.12328720092773438 3 Unmodified _WHCLRRED_ ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105744.8 NaN 2732 1990 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4725 31.853 NaN 13344 35 0 5436.5 0.261 + 22975 QYWKCLSRK 9 12 606.3214111328125 NaN 0 606.3214111328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _QYWKCLSRK_ REV__ENSG00000204740|ENST00000454679|MALRD1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102270.3 NaN 2733 1990 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4726 31.857 NaN 27317 35 0 4338.3 0.261 + -1 PCCMMWTS 8 21 544.6876841080942 NaN 0 544.6881103515625 PEAK HCD FTMS 0 0 0 4721 4368.7216796875 0.29980004488719864 -4 0.09340286254882812 5 2 Carbamidomethyl (C),Oxidation (M) _PC(Carbamidomethyl (C))C(Carbamidomethyl (C))M(Oxidation (M))MWTS_ REV__TMEM225|p.P49T|1|0.31|ENSG00000204300|chr11:123885281-123885281|G/T|missense_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83813.9 NaN 2734 1990 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4727 31.86 NaN 47595 35 0 10599 0.261 + 1724 CIRFLFWF 8 16 566.2934405858144 1130.5723282384288 2 566.2930908203125 MULTI HCD FTMS 0 0 0 4721 6659.029296875 0.42902412832332903 -2 0.04338645935058594 6 Unmodified _CIRFLFWF_ ENSG00000114200|ENST00000264381|BCHE 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92040.6 NaN 2735 1990 4721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4729 31.865 NaN 432630 35 0 98397 0.327 + 577 APEERPAAL 9 54 477.2562390677826 952.4979252023652 2 477.2559814453125 MULTI HCD FTMS 0 0 0 4728 243174.390625 0.8627943826418853 1 -0.03327751159667969 1 Unmodified _APEERPAAL_ ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF 79.59630418116434 0.005983006570063981 2 [PA]EERAPA{I|L} 9 2 + 99.307 0 0 10.426 10.426 91.795 0 0 0 8.354706403678875 4.771212547196626 4.771212547196626 4.771212547196626 0 2.3494850021680094 1.6989700043360187 1.1989700043360187 0 [PA]EERAPA{I|L};[PA]EERAP{I|L}A;APEERAPA{I|L};[PA]EERA{I|L}PA;[EP]AERAPA{I|L};[EP]AERAP{I|L}A;[PA]AA[NS]AAPA{I|L};[EP]AERA{I|L}PA;[PA]AA[NS]AAP{I|L}A;[PA]AA[NS]AA{I|L}PA 10.426;9.925;9.5488;9.2942;7.8803;7.3794;7.103;6.7486;6.6021;5.9713 -;-;-;-;-;-;-;-;-;- 325 NaN NaN 151600.2 NaN 2736 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4730 31.87 NaN 451080 35 0 87492 0.261 + 9693 HVTQEDFEM 9 49 576.2374246596213 1150.4602963860425 2 576.2373657226562 MULTI HCD FTMS 0 0 0 4728 273203.1875 0.9817935041389731 1 -0.03327751159667969 2 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 128.93241758739586 0.0006697181619526092 2 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 101.3 0 0 8.8049 8.8049 93.146 0 0 0 5.6424927368725974 14.177353201839438 5.6424927368725974 9.208187539523749 0 3.1549471895720984 0 2.416386562212267 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]TQEDE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DP][RP]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]EDE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DP][RP]EDE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}DEQT[HV];[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}DE[AG]T[HV] 8.8049;8.0045;6.3923;6.3203;5.5919;5.14;2.5771;1.7767 +;-;-;-;-;-;-;- + 223 + NaN NaN 150769.6 NaN 2737 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4731 31.873 NaN 128280 35 0 38470 0.262 + 25065 SAASEQHVF 9 42 488.2302615313267 974.4459701294534 2 488.22991943359375 MULTI HCD FTMS 0 0 0 4728 62069.97265625 0.7015661302327562 2 -0.049938201904296875 3 Unmodified _SAASEQHVF_ ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 24.990960013464015 0.14443998892849796 2 {[SA]|[TG]}ASEQ[HV]{M(Oxidation (M))|F} 9 0 + 42.866 0 0 4.399 4.399 86.093 0 0 0 22.381062318217104 9.449237304209888 9.449237304209888 9.208187539523749 0 1.274227503252014 0 0 0 + + {[SA]|[TG]}ASEQ[HV]{M(Oxidation (M))|F};{[SA]|[TG]}ASE[AG][HV]{M(Oxidation (M))|F} 4.399;3.454 +;- + 31 + NaN NaN 112459.8 NaN 2738 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4732 31.877 NaN 122580 35 0 14172 0.261 -1 SPSPMDPHM 9 51 507.7044258437754 NaN 0 507.70416259765625 PEAK HCD FTMS 0 0 0 4728 18715.263671875 0.6414620320166854 -1 0.023336410522460938 4 Oxidation (M) _SPSPM(Oxidation (M))DPHM_ ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 7.289230182591677 0.2599242500475609 2 T 1 -1 6.5938 0 0 0.65066 0 0 147.9662114514196 761.3562716119749 909.3224830633944 0 0 0 0 0 0 0 0.5 0 T 0.65066 - 14 + NaN NaN 96767.7 NaN 2739 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4733 31.88 NaN 52178 35 0 5299.2 0.261 + 9262 HPLSDHEATL 10 25 560.275116196647 1118.535679460094 2 560.2744140625 MULTI HCD FTMS 0 0 0 4728 20059.646484375 0.44835438130997296 36 -0.7102260589599609 5 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 6.723162845929126 0.4397169348982109 2 E 1 9 3.4949 0 0 0.31245 0 0 813.9395928895846 172.52926050357658 986.4688533931611 0 0 0 0 0 0 0 0 0 + E 0.31245 + + 4 + NaN NaN 89749.3 NaN 2740 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4734 31.883 NaN 42795 35 0 5763.4 0.261 -1 HPTDVDYRVM 10 22 624.7877100523971 1247.560867171594 2 624.7874755859375 MULTI HCD FTMS 0 0 0 4728 20451.0546875 0.47760572338319207 9 -0.2029552459716797 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 10.073929032068715 0.4168838835836452 2 N 1 -1 3.9794 0 0 0.31897 0 0 728.8520181499129 401.65131555728755 1130.5033337072005 0 0 0 0 0 0 0 0 0 N 0.31897 - 3 + NaN NaN 107029.8 NaN 2741 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4735 31.887 NaN 37058 35 0 6702.5 0.261 -1 HMEENQRVA 9 20 565.2580327613747 1128.5015125895493 2 565.2583618164062 MULTI HCD FTMS 0 0 0 4728 13728.44140625 0.9831535607723385 -1 0.023336410522460938 7 Oxidation (M) _HM(Oxidation (M))EENQRVA_ ENSG00000137824|ENST00000338376|RMDN3;ENST00000560460.5_3_15:41032354-41043778:-|nuORF 3.2813086475875832 0.32614229037259 2 {I|L}EE{[YC]|[HE]} 5 -1 17.703 0 0 1.5687 0 0 473.2274342267594 0 473.2274342267594 0 17.703037561203843 0 0 0 0 0 0 0 {I|L}EE{[YC]|[HE]} 1.5687 - 10 NaN NaN 93676.3 NaN 2742 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4736 31.89 NaN 20922 35 0 4392.9 0.261 + 25836 SLVKKLKKKKG 11 18 628.9421997070312 NaN 0 628.9421997070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _SLVKKLKKKKG_ ENSG00000120693|ENST00000379826|SMAD9;nc|ENSG00000120693|O15198-2|SMAD9;SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89770.3 NaN 2743 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4737 31.893 NaN 17596 35 0 3064.3 0.261 -1 PLCLHPGSWP 10 16 582.2879994373832 NaN 0 582.2887573242188 PEAK HCD FTMS 0 0 0 4728 2147.2470703125 0.25416127960236384 2 -0.049938201904296875 9 Carbamidomethyl (C) _PLC(Carbamidomethyl (C))LHPGSWP_ ENST00000382192.7_1_16:3162562-3163414:+|nuORF 1.844237919475145 0.33860587697544825 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88065.8 NaN 2744 1991 4728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4739 31.899 NaN 153030 35 0 23131 0.326 -1 DRMKVAQQ 8 29 496.2538874322882 NaN 0 496.2538146972656 PEAK HCD FTMS 0 0 0 4738 37007.4296875 0.41998822389425233 11 -0.24275970458984375 1 Oxidation (M) _DRM(Oxidation (M))KVAQQ_ ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 2.302733041254933 0.38822285293237185 2 T 1 -1 1.5938 0 0 0.16091 0 0 449.74408970657015 436.6910799615844 886.4351696681546 0 0 0 0 0 0 0 0 0 T 0.16091 - 1 + NaN NaN 104089 NaN 2745 1992 4738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4740 31.903 NaN 74851 35 0 9624.1 0.261 + 4097 ESSAGGSFTVR 11 31 549.2649292144196 1096.515305495639 2 549.2650146484375 MULTI HCD FTMS 0 0 0 4738 37053.58203125 0.7685329438323067 2 -0.04334068298339844 2 Unmodified _ESSAGGSFTVR_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000436135.1_1_1:158493653-158493989:+|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P 13.51866281300042 0.33929385944539686 2 {[ES]|[DT]|[{I|L}C]}{[SA]|[TG]}GGS{M(Oxidation (M))|F}TVR 11 0 + 48.972 0 0 4.4661 4.4661 84.279 0 0 0 39.30578591241531 15.070623213458028 15.070623213458028 6.575773191777934 0 0 0 0 0 + + {[ES]|[DT]|[{I|L}C]}{[SA]|[TG]}GGS{M(Oxidation (M))|F}TVR;{[ES]|[DT]|[{I|L}C]}{[SA]|[TG]}NS{M(Oxidation (M))|F}TVR;{[ES]|[DT]|[{I|L}C]}{[QS]|[NT]}GS{M(Oxidation (M))|F}TVR;{[ES]|[DT]|[{I|L}C]}{[SA]|[TG]}G[YQ]TVR;{[ES]|[DT]|[{I|L}C]}{[QS]|[NT]}[YQ]TVR 4.4661;3.8664;3.8664;2.4309;1.8352 +;-;-;-;- + 69 + NaN NaN 97682.5 NaN 2746 1992 4738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4741 31.907 NaN 46899 35 0 4502.4 0.261 -1 TATEVDIKM 9 31 512.2551984156362 1022.4958438980724 2 512.25537109375 MULTI HCD FTMS 0 0 0 4738 20972.119140625 0.813486201138819 -1 0.03327751159667969 3 Oxidation (M) _TATEVDIKM(Oxidation (M))_ ENSG00000177409|ENST00000318238|SAMD9L 19.361941925380144 0.1930734562688509 2 [TA]TEV{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 9 -1 + 40.396 0 0 3.9508 3.9508 89.786 0 0 0 33.94279652582085 14.09256854528806 14.09256854528806 40.3964467209417 0 0.3807196863200844 0 0.4247425010840047 0 [TA]TEV{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 3.9508 + + 28 + NaN NaN 112737.6 NaN 2747 1992 4738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4742 31.91 NaN 9962.3 35 0 4255.2 0.261 -1 DMCEMWGEM 9 8 602.6931496694548 NaN 0 602.6920166015625 PEAK HCD FTMS 0 0 0 4738 5055.8447265625 0.39672362592896643 2 -0.04334068298339844 4 Carbamidomethyl (C),Oxidation (M) _DMC(Carbamidomethyl (C))EMWGEM(Oxidation (M))_ ENSG00000250782|ENST00000512227|TAF11L14 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97641.1 NaN 2748 1992 4738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4744 31.915 NaN 1062900 35 0 235150 0.327 + 672 APQPTEERL 9 76 520.7721746641735 1039.5297963951468 2 520.7720336914062 MULTI HCD FTMS 0 0 0 4743 563320.625 0.8384828006056563 -1 0.016660690307617188 1 Unmodified _APQPTEERL_ ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN 88.36371040165146 0.004568843997105255 2 APQPTEER{I|L} 9 0 + 105.68 0 0 10.166 10.166 94.293 0 0 0 78.8707912989088 9.137342758552691 9.137342758552691 9.208187539523749 0 2.103917193908117 1.2218487496163564 1.7971062485323517 0.7614393726401688 + + APQPTEER{I|L};AP[AG]PTEER{I|L};AP{[QD]|[EN]|[WG]|[KD]|[RS]}[DP]ER{I|L};[PA]GAPTEER{I|L};[PA]QPTEER{I|L};[QP]APTEER{I|L};AP{[QD]|[EN]|[WG]|[KD]|[RS]}[R{I|L}]E[DP];[PA]G[PS][DV]ER{I|L};[VS]QP[DP]ER{I|L};[KG]EP[DP]ER{I|L} 10.166;9.2799;5.5344;5.1984;4.57;3.9014;3.4576;3.3002;2.6399;2.1809 +;-;-;-;+;-;-;-;-;- + 498 + NaN NaN 250903.4 NaN 2749 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4745 31.92 NaN 583380 35 0 95935 0.261 + 24929 RYSSMAASF 9 54 518.2320836689696 1034.4496144047391 2 518.2321166992188 MULTI HCD FTMS 0 0 0 4743 365568.65625 0.8728519775270889 -9 0.20648574829101562 2 Oxidation (M) _RYSSM(Oxidation (M))AASF_ ENSG00000162366|ENST00000294338|PDZK1IP1 65.47368725323818 0.010552856507075443 2 [YR]SS{M(Oxidation (M))|F}AAS{M(Oxidation (M))|F} 9 0 + 65.543 0 0 6.336 6.336 92.866 0 0 0 1.3418903791359327 32.839862491657854 1.3418903791359327 31.46591250700361 0 2.0994850021680094 0 0.4247425010840047 0 + + [YR]SS{M(Oxidation (M))|F}AAS{M(Oxidation (M))|F};[YR]SS{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F} 6.336;3.2942 +;- + 369 NaN NaN 165487.4 NaN 2750 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4746 31.923 NaN 75970 35 0 24726 0.261 + 9304 HPQEENEPSL 10 20 590.2674888038351 1178.5204246744702 2 590.2674560546875 MULTI HCD FTMS 0 0 0 4743 30663.6015625 0.5149528145251152 1 -0.02667999267578125 3 Unmodified _HPQEENEPSL_ ENSG00000137275|ENST00000259808|RIPK1;nc|ENSG00000137275|Q13546-2|RIPK1 7.608950283845883 0.4350283211712914 2 YE[PS]{I|L} 5 6 27.218 0 0 2.3095 0 0 571.2494984357437 0 571.2494984357437 0 27.21848749616356 0 0 0 0.5 0 0 0 YE[PS]{I|L} 2.3095 - 5 NaN NaN 96985.9 NaN 2751 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4747 31.927 NaN 75874 35 0 5457.3 0.264 -1 RYQEMIQKL 9 45 408.88499250820234 1223.6331481248071 3 408.8848876953125 MULTI HCD FTMS 0 0 0 4743 11801.458984375 0.3046907067712486 -1 0.016660690307617188 4 Oxidation (M) _RYQEM(Oxidation (M))IQKL_ ENSG00000151466|ENST00000281142|SCLT1;ENST00000502495.1_1_4:129805634-129873545:-|nuORF 17.86316937532769 0.20602251856053128 2 [YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}QK{I|L} 9 -1 + 29.555 0 0 2.4154 2.4154 88.15 0 0 0 1.539843494254999 20.602802969692746 1.539843494254999 29.55522789697959 0 0.8182503180159344 0 0 0 [YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}QK{I|L} 2.4154 + + 29 NaN NaN 95436.2 NaN 2752 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4748 31.93 NaN 46649 35 0 8987.9 0.261 -1 LPTENVDKM 9 22 531.7603301690941 1061.5061074049881 2 531.7600708007812 MULTI HCD FTMS 0 0 0 4743 28373.900390625 0.8601680684807474 2 -0.05001258850097656 5 Oxidation (M) _LPTENVDKM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 10.799506525563784 0.2670509983294061 2 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.939 0 0 621.28032118965 0 621.28032118965 0 10.228787452803374 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.939 - 7 NaN NaN 82117.1 NaN 2753 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4749 31.933 NaN 26077 35 0 6560.3 0.261 + 360 AHDNVDRVTI 10 23 570.2938449930249 1138.5731370528497 2 570.2942504882812 MULTI HCD FTMS 0 0 0 4743 14992.423828125 0.01613149164198478 65 -1.3462543487548828 6 Unmodified _AHDNVDRVTI_ REV__ENSG00000166341|ENST00000299441|DCHS1 4.897010918128616 0.4493830473644964 2 [HA]D 3 -1 15.458 0 0 1.3576 0 0 0 812.4204805963499 812.4204805963499 15.45757490560675 0 0 0 0 0.5 0 0 0 [HA]D 1.3576 + + 2 + NaN NaN 82515.4 NaN 2754 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4750 31.937 NaN 14004 35 0 3400.9 0.261 -1 CRALRSRRTT 10 15 638.854303659671 1275.694054386142 2 638.8543701171875 MULTI HCD FTMS 0 0 0 4743 2556.77001953125 0.049757752066894756 12 -0.27254295349121094 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))RALRSRRTT_ ENST00000243563.7_1_19:41268908-41271049:+|nuORF 0.35063188157827746 0.47344775436540215 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84262.1 NaN 2755 1993 4743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4752 31.942 NaN 842740 35 0 270190 0.327 + 18815 NADPQAVTM 9 45 481.71613286382154 961.4177127944431 2 481.7159118652344 MULTI HCD FTMS 0 0 0 4751 438354.5 0.37871424873434734 -11 0.24318695068359375 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 110.5527297667825 0.0028521687250969148 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 92.884 0 0 9.6612 9.6612 99.228 0 0 0 3.2082530717588753 3.2082530717588753 3.2082530717588753 92.88418440905893 0 2.774227503252014 1.2218487496163564 0.3252574989159953 1.079689690656103 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9.6612 + + 117 NaN NaN 220750.4 NaN 2756 1994 4751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4753 31.947 NaN 252910 35 0 26626 0.261 + 25079 SADMSHVAL 9 46 473.7187324530392 945.4229119728784 2 473.7185363769531 MULTI HCD FTMS 0 0 0 4751 192877.109375 0.5794911481160171 2 -0.05324363708496094 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 88.90359156742426 0.00455469703666567 2 {[SA]|[TG]}D{M(Oxidation (M))|F}SHVA{I|L} 9 0 + 73.866 0 0 7.813 7.813 92.986 0 0 0 4.172064656532882 4.172064656532882 4.172064656532882 11.448565749036064 0 2.517220322351953 1.3979400086720375 0.7302046884880937 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}SHVA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]SA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]{I|L}{[SA]|[TG]} 7.813;6.6021;3.2151 +;-;- + 72 NaN NaN 139171.3 NaN 2757 1994 4751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4754 31.95 NaN 93786 35 0 9407.3 0.261 + 34663 YPSQDNDRL 9 47 554.2567881791995 1106.4990234251989 2 554.2569580078125 MULTI HCD FTMS 0 0 0 4751 53560.078125 0.8754650240313628 5 -0.09982109069824219 3 Unmodified _YPSQDNDRL_ ENSG00000146070|ENST00000274793|PLA2G7 21.590151480376914 0.17382222009858564 2 YPSQD 5 4 48.716 0 0 4.4027 0 0 0 513.2432955377561 513.2432955377561 36.950010276180336 0 0 0 0 0.8494850021680094 1.154901959985743 0 0 + YPSQD 4.4027 + + 57 + NaN NaN 112756 NaN 2758 1994 4751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4755 31.953 NaN 83954 35 0 14766 0.261 + 22029 QGCWACLGF 9 30 492.7072375654312 983.3999221976625 2 492.7070617675781 MULTI HCD FTMS 0 0 0 4751 48378.21875 0.3962975015783328 -11 0.24318695068359375 4 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 2 {[QG]|[NA]}D 3 7 34.265 0 0 3.4843 0 0 0 680.2704415670562 680.2704415670562 7.626656038284452 0 0 0 0 1 1.3010299956639813 0 0.3807196863200844 {[QG]|[NA]}D 3.4843 - 12 NaN NaN 93475.1 NaN 2759 1994 4751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4756 31.957 NaN 64051 35 0 4743.8 0.262 + 11886 KFGASRAA 8 38 404.22830807128 NaN 0 404.2154235839844 PEAK HCD FTMS 0 0 0 4751 1494.5604248046875 0.8622242150470513 -1 0.02667999267578125 5 Unmodified _KFGASRAA_ ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 2.0597508629832335 0.38822285293237185 2 G 1 7 6.9897 0 0 0.86673 0 0 267.17614631658506 479.21051965885005 746.3866659754351 0 0 0 0 0 0 0 0 0 + G 0.86673 + + 1 + NaN NaN 95333.9 NaN 2760 1994 4751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4757 31.96 NaN 40655 35 0 5777.1 0.261 + 19440 NPQNPGSWEG 10 29 543.2359619140625 NaN 0 543.2359619140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NPQNPGSWEG_ REV__ENSG00000100354|ENST00000454349|TNRC6B;REV__nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;REV__TNRC6B|p.K932*|1|0.17|ENSG00000100354|chr22:40267022-40267023|-/T|frameshift_variant 1.4819007175156935 0.33891598740166873 2 Q 1 -1 3.0989 0 0 0.28602 0 0 558.700560642775 393.6797274225219 952.380288065297 0 0 0 0 0 0 0 0 0 Q 0.28602 + + 2 + NaN NaN 98823.7 NaN 2761 1994 4751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4759 31.965 NaN 625180 35 0 93849 0.326 + 27806 TAVKNDYEM 9 58 535.7444555876 1069.4743582419999 2 535.7448120117188 MULTI HCD FTMS 0 0 0 4758 262004.515625 1 0 0 1 Unmodified _TAVKNDYEM_ ENSG00000132383|ENST00000254719|RPA1 59.368380827593164 0.01846506874148156 2 [TA]VK[DN]YEM 9 0 + 34.886 0 0 3.262 3.262 87.914 0 0 0 11.698559138057767 1.940834170577908 1.940834170577908 21.452877223150402 0 2.1307196863200843 0 1.1237125054200234 0 + + [TA]VK[DN]YEM;[YE][{I|L}T]{[RE]|[WV]}EM 3.262;1.2561 +;- + 68 + NaN NaN 175845.4 NaN 2762 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4760 31.97 NaN 222350 35 0 36733 0.261 -1 MGHSATPEL 9 39 500.7239044168945 999.4332559005891 2 500.723876953125 MULTI HCD FTMS 0 0 0 4758 126825.578125 0.7587834429510902 3 -0.0598297119140625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 26.88365393820708 0.12808753336095696 2 G[TP]E{I|L} 5 -1 36.823 0 0 3.6843 0 0 484.16148574043126 0 484.16148574043126 0 29.83288122256525 0 0 0 0.8494850021680094 0 0.8494850021680094 0 G[TP]E{I|L} 3.6843 - 30 NaN NaN 115116.2 NaN 2763 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4761 31.973 NaN 166510 35 0 13965 0.261 + 22257 QPDDHAATTSL 11 46 578.2674754701683 1154.5203980071365 2 578.2676391601562 MULTI HCD FTMS 0 0 0 4758 95151.78125 0.8581342974199241 -3 0.06667327880859375 3 Unmodified _QPDDHAATTSL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 8.745405648335112 0.3805662881914433 2 STT 3 9 21.995 0 0 1.9051 0 0 148.11933541129434 714.2484034285083 862.3677388398025 0 0 0 0 0 0 0 0.8807196863200843 0 STT 1.9051 - 56 + NaN NaN 110003.8 NaN 2764 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4762 31.977 NaN 159690 35 0 21876 0.261 + 26018 SPEEKQEML 9 41 545.7579746134921 1089.5013962937842 2 545.7579345703125 MULTI HCD FTMS 0 0 0 4758 107006.7578125 0.5565692355466318 -4 0.09995079040527344 4 Unmodified _SPEEKQEML_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 61.08992128646608 0.016056751534446034 2 [PS]EEKQEM{I|L} 9 0 + 81.961 0 0 7.5228 7.5228 91.235 0 0 0 5.6424927368725974 62.039106406846045 5.6424927368725974 9.208187539523749 0 1.8807196863200843 0 0.8494850021680094 0.3054621874040891 + + [PS]EEKQEM{I|L};[PS]EEK[AG]EM{I|L} 7.5228;6.6776 +;- + 140 NaN NaN 114700.1 NaN 2765 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4763 31.98 NaN 156290 35 0 23526 0.261 -1 GQRCCCCW 8 47 508.17170162865585 1014.3288503241117 2 508.17132568359375 MULTI HCD FTMS 0 0 0 4758 53746.1796875 0.44686887318226576 -10 0.2333812713623047 5 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 2.302733041254933 0.5385759549224092 2 T{M(Oxidation (M))|F} 2 -1 18.94 0 0 1.8673 0 0 748.235846028993 0 748.235846028993 0 9.987737688117234 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 1.8673 - 14 + NaN NaN 105804 NaN 2766 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4764 31.983 NaN 93389 35 0 9534.8 0.261 -1 MVISEKEAM 9 41 527.251369701805 1052.4881864704098 2 527.2512817382812 MULTI HCD FTMS 0 0 0 4758 28880.12109375 0.5499555137211216 3 -0.0598297119140625 6 Oxidation (M) _MVISEKEAM(Oxidation (M))_ ENSG00000115548|ENST00000312912|KDM3A 18.1463463914782 0.20357593197100715 2 S{I|L}[DP] 4 -1 22.792 0 0 2.1655 0 0 622.2653675763687 0 622.2653675763687 0 19.40228147639203 0 0 0 1.1989700043360187 0 0 0 S{I|L}[DP] 2.1655 - 35 NaN NaN 105686.7 NaN 2767 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4765 31.987 NaN 29894 35 0 6749.2 0.261 + -1 LLHCVMQVM 9 14 573.7763490075281 1145.538145081856 2 573.7769775390625 MULTI HCD FTMS 0 0 0 4758 11646.9638671875 0.8332915400495524 1 -0.029911041259765625 7 Carbamidomethyl (C),Oxidation (M) _LLHC(Carbamidomethyl (C))VMQVM(Oxidation (M))_ REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;REV__DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;REV__ENSG00000007174|ENST00000262442|DNAH9;REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 7.910154910731844 0.2910521888787154 2 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.7035 0 0 881.4239005523624 0 881.4239005523624 0 30.969100130080562 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.7035 + + 5 + NaN NaN 84344.7 NaN 2768 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4766 31.99 NaN 20305 35 0 4105 0.261 + 29326 TYNQHYNNL 9 16 583.7647171227292 1165.5148813122582 2 583.765380859375 MULTI HCD FTMS 0 0 0 4758 14671.330078125 0.5167888306723086 -2 0.05001258850097656 8 Unmodified _TYNQHYNNL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94159.3 NaN 2769 1995 4758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4768 31.995 NaN 115440 35 0 8569 0.327 + 22380 QPQQVIHGEKL 11 62 426.2384986851515 1275.6936666556546 3 426.2383728027344 MULTI HCD FTMS 0 0 0 4767 44878.6640625 0.06680634922968241 15 -0.3091773986816406 1 Unmodified _QPQQVIHGEKL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 4.603747607663779 0.39873019341487226 2 QV{I|L}G 4 7 15.918 0 0 1.2478 0 0 353.17115757039545 522.2660006158811 875.4371581862765 0 0 0 0 0 0 0 0 0 QV{I|L}G 1.2478 - 39 + NaN NaN 95294.6 NaN 2770 1996 4767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4769 32 NaN 103780 35 0 9971.7 0.261 -1 VMKRNMFI 8 37 527.7800385602495 1053.545524187299 2 527.7798461914062 MULTI HCD FTMS 0 0 0 4767 49382.73828125 0.9180040751832089 -1 0.029911041259765625 2 Oxidation (M) _VMKRNM(Oxidation (M))FI_ ENST00000502279.2_1_12:133424766-133425368:-|nuORF 10.183394434864962 0.5188676124868831 2 {I|L}S 2 -1 6.4537 0 0 0.61256 0 0 231.16949999599314 619.2387179010374 850.4082178970305 0 0 0 0 0 0 0 0 0 {I|L}S 0.61256 - 12 + NaN NaN 96938.1 NaN 2771 1996 4767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4770 32.003 NaN 12212 35 0 4278.5 0.261 -1 FICCWSPYF 9 11 640.2670903683257 NaN 0 640.267578125 PEAK HCD FTMS 0 0 0 4767 5290.8984375 0.3083338720853893 -3 0.07992362976074219 3 2 Carbamidomethyl (C) _FIC(Carbamidomethyl (C))C(Carbamidomethyl (C))WSPYF_ ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-2|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92484.5 NaN 2772 1996 4767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4772 32.009 NaN 164350 35 0 32861 0.327 + 9694 HVTQEDFEM 9 35 576.2374246596213 1150.4602963860425 2 576.2373657226562 MULTI HCD FTMS 0 0 0 4771 98952.4296875 0.35559926505599787 7 -0.152801513671875 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 67.83816525789305 0.009787749748478139 2 QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 76.988 0 0 6.6919 0 0 337.17393271592374 0 337.17393271592374 0 60.789719040763046 0 0 0 2.4247425010840047 0 1.610924374808178 0 + QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.6919 + + 73 + NaN NaN 107586.4 NaN 2773 1997 4771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4773 32.013 NaN 222290 35 0 25484 0.263 + 15951 LPPPHQPQ 8 51 457.24817387645953 912.4817948197191 2 457.2480163574219 MULTI HCD FTMS 0 0 0 4771 122951.9296875 0.4600403780119959 -5 0.10987472534179688 2 Unmodified _LPPPHQPQ_ ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF 19.438996006549623 0.45076845602799126 2 VN{[SA]|[TG]}H 5 7 47.492 0 0 5.2047 0 0 0 401.21882044010005 401.21882044010005 17.9390028798052 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0.3807196863200844 VN{[SA]|[TG]}H 5.2047 - 65 + NaN NaN 116005.7 NaN 2774 1997 4771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4774 32.017 NaN 139930 35 0 29590 0.261 + 578 APEERPAAL 9 37 477.2562390677826 952.4979252023652 2 477.2560729980469 MULTI HCD FTMS 0 0 0 4771 70493.09375 0.25011287227338064 7 -0.152801513671875 3 Unmodified _APEERPAAL_ ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF 41.95555342248728 0.056367691549927025 2 APEER[PA]A{I|L} 9 0 + 53.751 0 0 5.6432 5.6432 92.622 0 0 0 49.1470593548587 5.162574822053543 5.162574822053543 53.75115312462057 0 2.1861818737241734 0 0.3807196863200844 0 + + APEER[PA]A{I|L} 5.6432 + + 51 + NaN NaN 108259 NaN 2775 1997 4771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4775 32.02 NaN 69881 35 0 7607.2 0.261 + 9263 HPLSDHEATL 10 36 560.275116196647 1118.535679460094 2 560.2748413085938 MULTI HCD FTMS 0 0 0 4771 25603.3359375 0.5722617221929011 42 -0.7998695373535156 4 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 3.5964929083625545 0.45626689593999237 2 C(Carbamidomethyl (C)) 1 10 6.9897 0 0 0.6249 0 0 149.10577388430028 806.3535860650999 955.4593599494001 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.6249 - 3 + NaN NaN 98881.5 NaN 2776 1997 4771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4777 32.025 NaN 1298400 35 0 313520 0.326 + 12978 KYIHSANVL 9 89 522.7952949095836 1043.5760368859671 2 522.7952270507812 MULTI HCD FTMS 0 0 0 4776 612840.625 0.5834810266985808 -3 0.0598297119140625 1 Unmodified _KYIHSANVL_ ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;ENSG00000141639|ENST00000400384|MAPK4;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 143.90916361153978 1.5265063399744E-05 2 [YK]{I|L}HSANV{I|L} 9 0 + 85.865 0 0 8.228 8.228 92.37 0 0 0 8.133841406598833 59.51671930021374 8.133841406598833 9.208187539523749 0 2.224907363720609 0 0.9247425010840047 1.3556270500406937 + + [YK]{I|L}HSANV{I|L};[YK]{I|L}HSAGGV{I|L};[YK]H{I|L}SANV{I|L};{[QN]|[E{I|L}]|[KN]}W{I|L}SANV{I|L};KY{I|L}HSANV{I|L};[YK]H{I|L}SAGGV{I|L};[{M(Oxidation (M))|F}V]PREANV{I|L};[KG]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}SANV{I|L};{[QN]|[E{I|L}]|[KN]}W{I|L}SAGGV{I|L};[KG][WK]EANV{I|L} 8.228;7.3456;6.9973;6.3558;6.1813;6.1149;5.9872;5.8816;5.4734;5.3443 +;-;-;-;+;-;-;-;-;- + 1642 NaN NaN 302244.3 NaN 2777 1998 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4778 32.03 NaN 30599 35 0 4740.8 0.261 -1 HPTDVDYRVM 10 21 624.7877100523971 1247.560867171594 2 624.7870483398438 MULTI HCD FTMS 0 0 0 4776 9043.525390625 0.2111988624608052 16 -0.33232879638671875 2 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 6.2057823575117 0.44245551207394906 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84278.5 NaN 2778 1998 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4779 32.033 NaN 84760 35 0 19926 0.264 -1 HPTDVDYRVM 10 36 416.8607560176436 1247.5604386531309 3 416.8603515625 MULTI HCD FTMS 0 0 0 4776 17473.314453125 0.4028295616950804 11 -0.249298095703125 3 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 18.721224879955976 0.3359999958351898 2 VWV{M(Oxidation (M))|F} 4 -1 20.177 0 0 1.6173 0 0 698.3041042798872 0 698.3041042798872 0 13.187587626244124 0 0 0 0.8494850021680094 0 0 0 VWV{M(Oxidation (M))|F} 1.6173 - 19 + NaN NaN 109906.8 NaN 2779 1998 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4780 32.037 NaN 67391 35 0 7861.5 0.261 + 12156 KKKKKKKKKSF 11 34 469.3285295826401 NaN 0 469.3288879394531 PEAK HCD FTMS 0 0 0 4776 8157.97412109375 0.5835940566744837 -84 1.6008892059326172 4 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 A 1 11 6.9897 0 0 0.74625 0 0 700.5597405844225 162.02271448306877 862.5824550674912 0 0 0 0 0 0 0 0 0 A 0.74625 - 3 + NaN NaN 103271.3 NaN 2780 1998 4776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4782 32.042 NaN 285450 35 0 62252 0.327 + 12922 KYGPIRQI 8 47 487.7927278404663 973.5709027477326 2 487.7925109863281 MULTI HCD FTMS 0 0 0 4781 173752.078125 0.9874965955307611 -2 0.03328704833984375 1 Unmodified _KYGPIRQI_ ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF 21.74664581756881 0.4337896562907935 2 KYG 3 5 30.005 0 0 3.082 0 0 0 622.3676241510374 622.3676241510374 9.035984316004217 0 0 0 0 0.3807196863200844 0 0 0 + KYG 3.082 + + 21 + NaN NaN 125341.3 NaN 2781 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4783 32.046 NaN 57020 35 0 7523.8 0.261 -1 FVDEHEPSM 9 32 553.7264753989185 1105.438397864637 2 553.726318359375 MULTI HCD FTMS 0 0 0 4781 18718.525390625 0.5764495980683414 11 -0.24926376342773438 2 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 7.910154910731844 0.2910521888787154 2 C{NN|[MP]|[D{I|L}]|[EV]} 3 -1 14.705 0 0 1.3302 0 0 756.3092518537125 0 756.3092518537125 0 14.704999916446797 0 0 0 0.4247425010840047 0 0 0 C{NN|[MP]|[D{I|L}]|[EV]} 1.3302 - 10 NaN NaN 90606 NaN 2782 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4784 32.05 NaN 105840 35 0 11933 0.261 + 3339 EELGHTETY 9 38 539.7381498148177 1077.4617466964353 2 539.73876953125 MULTI HCD FTMS 0 0 0 4781 29646.984375 1 0 0 3 Unmodified _EELGHTETY_ ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2 11.640296217721598 0.25978676193971967 2 TY 2 7 22.831 0 0 2.119 0 0 795.3406662294416 0 795.3406662294416 0 9.018637558036673 0 0 0 0.4247425010840047 0 0 0 + TY 2.119 + + 15 + NaN NaN 113506.3 NaN 2783 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4785 32.053 NaN 44457 35 0 10834 0.261 + -1 TLNAETCAM 9 21 513.715169452032 1025.415785970864 2 513.7155151367188 MULTI HCD FTMS 0 0 0 4781 12525.5078125 0.17253461825088715 45 -0.8865623474121094 4 Carbamidomethyl (C),Oxidation (M) _TLNAETC(Carbamidomethyl (C))AM(Oxidation (M))_ REV__ENSG00000221843|ENST00000447166|C2orf16 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97579.7 NaN 2784 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4786 32.056 NaN 14216 35 0 5880.5 0.261 -1 0 12 599.3904912771037 598.3832148105037 1 599.3900146484375 MULTI HCD FTMS 0 0 0 4781 13974.4970703125 0.4303016399645965 13 -0.28922271728515625 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83033 NaN 2785 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4787 32.06 NaN 32343 35 0 5351.4 0.261 -1 0 15 562.0474805905892 NaN 0 562.2008666992188 PEAK HCD FTMS 0 0 0 4781 4078.618896484375 0.5025863335092854 10 -0.23263931274414062 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92363.2 NaN 2786 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4788 32.063 NaN 29348 35 0 4767.7 0.261 + 8658 HFHKHQLW 8 25 566.7953491210938 NaN 0 566.7953491210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HFHKHQLW_ ENSG00000266524|ENST00000580279|GDF10 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89973.9 NaN 2787 1999 4781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4790 32.068 NaN 210100 35 0 38434 0.327 + 12713 KYAAHPGA 8 55 407.71442260196693 813.4142922707339 2 407.7138366699219 MULTI HCD FTMS 0 0 0 4789 46903.22265625 0.6368964992300842 -1 0.026515960693359375 1 Unmodified _KYAAHPGA_ ENST00000303375.9_1_17:60770648-60770867:+|nuORF 6.354104778181461 0.5325651638111438 2 KY[H{I|L}]N 5 5 29.961 0 0 3.6833 0 0 0 155.04584680728752 155.04584680728752 25.356668758921828 0 0 0 0 0.9247425010840047 0 0 0 KY[H{I|L}]N 3.6833 - 63 + NaN NaN 128402 NaN 2788 2000 4789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4791 32.073 NaN 48655 35 0 14788 0.261 + 19058 NEEQPHELSP 10 22 590.2674888038351 1178.5204246744702 2 590.2674560546875 MULTI HCD FTMS 0 0 0 4789 29237.533203125 0.4910039670986781 8 -0.18275833129882812 2 Unmodified _NEEQPHELSP_ REV__ENSG00000137275|ENST00000259808|RIPK1;REV__nc|ENSG00000137275|Q13546-2|RIPK1 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87013.9 NaN 2789 2000 4789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4792 32.076 NaN 37741 35 0 5929.5 0.261 + -1 IPMVAPCGKM 10 24 531.7603301690941 1061.5061074049881 2 531.7601928710938 MULTI HCD FTMS 0 0 0 4789 25077.642578125 0.7602404703444856 9 -0.20612335205078125 3 Oxidation (M) _IPMVAPCGKM(Oxidation (M))_ REV__CON__Q2KJC7 6.2057823575117 0.44245551207394906 2 {I|L}P 2 -1 20.969 0 0 1.9754 0 0 0 848.3455294244749 848.3455294244749 0 0 0 0 0 0 0 0 0 {I|L}P 1.9754 + + 3 + NaN NaN 103189.4 NaN 2790 2000 4789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4793 32.08 NaN 76488 35 0 14252 0.261 + 2199 DIISSQQEIN 10 26 573.7858468433258 1145.5571407534514 2 573.78662109375 MULTI HCD FTMS 0 0 0 4789 26142.146484375 0.36362212080419054 -6 0.12633705139160156 4 Unmodified _DIISSQQEIN_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 7.608950283845883 0.4350283211712914 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4 6 19.45 0 0 1.6979 0 0 0 714.3064234376319 714.3064234376319 9.718487496163561 0 0 0 0 0.3252574989159953 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 1.6979 + + 7 + NaN NaN 97101.8 NaN 2791 2000 4789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4794 32.083 NaN 39275 35 0 8567.8 0.261 + -1 VAVIEASSMT 10 34 512.2551984156362 1022.4958438980724 2 512.2552490234375 MULTI HCD FTMS 0 0 0 4789 7719.33056640625 0.29942462445945495 7 -0.15944290161132812 5 Oxidation (M) _VAVIEASSM(Oxidation (M))T_ REV__ENSG00000134755|ENST00000280904|DSC2;REV__nc|ENSG00000134755|Q02487-2|DSC2 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90032.6 NaN 2792 2000 4789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4796 32.088 NaN 1784900 35 0 564220 0.327 + 18816 NADPQAVTM 9 56 481.71613286382154 961.4177127944431 2 481.7161560058594 MULTI HCD FTMS 0 0 0 4795 1046768.8125 0.9043508494254818 -4 0.07970428466796875 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 145.12958885780327 1.3974915176135797E-05 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 97.929 0 0 10.186 10.186 98.461 0 0 0 2.7422750325201406 2.7422750325201406 2.7422750325201406 38.3103844862778 0 2.8494850021680094 1.2218487496163564 0.6307196863200843 1.5044321917401078 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};{[QG]|[NA]}D[NP][{I|L}A]T{M(Oxidation (M))|F} 10.186;6.2011 +;- + 175 NaN NaN 343640.5 NaN 2793 2001 4795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4797 32.093 NaN 682460 35 0 107620 0.261 + 24930 RYSSMAASF 9 56 518.2320836689696 1034.4496144047391 2 518.2322387695312 MULTI HCD FTMS 0 0 0 4795 402200.3125 0.9603157495197269 -1 0.019901275634765625 2 Oxidation (M) _RYSSM(Oxidation (M))AASF_ ENSG00000162366|ENST00000294338|PDZK1IP1 65.47368725323818 0.010552856507075443 2 TSAA[MD]AAS{M(Oxidation (M))|F} 10 5 68.933 0 0 6.6637 0 0 64.0178629094167 0 64.0178629094167 0 49.680475292681265 0 0 0 0 0 2.2302046884880937 0 TSAA[MD]AAS{M(Oxidation (M))|F} 6.6637 - 453 + NaN NaN 189523.8 NaN 2794 2001 4795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4798 32.096 NaN 186760 35 0 29743 0.261 -1 0 43 492.7072375654312 983.3999221976625 2 492.70703125 MULTI HCD FTMS 0 0 0 4795 111312.875 0.9118362642485935 -4 0.07970428466796875 3 NaN NaN 2 {[QG]|[NA]}D 3 -1 40.176 0 0 4.0854 0 0 0 680.2700753561187 680.2700753561187 13.85029351276792 0 0 0 0 1 1.5228787452803376 0 0.75 {[QG]|[NA]}D 4.0854 - 18 NaN NaN 114259.8 NaN 2795 2001 4795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4799 32.1 NaN 38171 35 0 6599.6 0.261 + 29328 TYNQKHSLF 9 19 569.2889082181366 1136.5632635030731 2 569.28857421875 MULTI HCD FTMS 0 0 0 4795 13663.982421875 0.4807135573561424 -3 0.06307601928710938 4 Unmodified _TYNQKHSLF_ ENSG00000165175|ENST00000614558|MID1IP1 12.240655878213236 0.2545997876781172 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 86819.4 NaN 2796 2001 4795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4800 32.103 NaN 39790 35 0 4458.7 0.261 + 19154 NGTEIAHIDAG 11 21 549.2649292144196 1096.515305495639 2 549.2515869140625 MULTI HCD FTMS 0 0 0 4795 7991.11279296875 0.1657446622595559 11 -0.24280548095703125 5 Unmodified _NGTEIAHIDAG_ CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;ENSG00000134256|ENST00000682167|CD101 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93933.3 NaN 2797 2001 4795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4801 32.106 NaN 53763 35 0 7998.7 0.263 + 21075 PMEKWFIFL 9 39 404.2158799617699 1209.6258104855096 3 404.2159729003906 MULTI HCD FTMS 0 0 0 4795 5939.7802734375 0.021705493783991742 32 -0.6005287170410156 6 Unmodified _PMEKWFIFL_ REV__ENSG00000064270|ENST00000262429|ATP2C2;REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF;REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF;REV__nc|ENSG00000064270|O75185-2|ATP2C2;REV__nc|ENSG00000064270|O75185-3|ATP2C2 1.0714618166137932 0.3428945748894048 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92591.2 NaN 2798 2001 4795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4803 32.112 NaN 187980 35 0 17483 0.327 + 26019 SPEEKQEML 9 53 545.7579746134921 1089.5013962937842 2 545.7579345703125 MULTI HCD FTMS 0 0 0 4802 146812.578125 0.7636093836133057 3 -0.07632827758789062 1 Unmodified _SPEEKQEML_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 61.08992128646608 0.016056751534446034 2 [PS]EEKQEM{I|L} 9 0 + 79.447 0 0 7.2921 7.2921 90.816 0 0 0 4.762036441594191 59.98319373273603 4.762036441594191 9.208187539523749 0 1.9247425010840047 0 0.6861818737241735 0.3494850021680094 + + [PS]EEKQEM{I|L};[PS]EEK[AG]EM{I|L};[PS]E{[VA]|[{I|L}G]}SQEM{I|L};[PS]E{[VA]|[{I|L}G]}S[AG]EM{I|L} 7.2921;6.4469;5.4354;4.2734 +;-;-;- + 152 NaN NaN 108227.4 NaN 2799 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4804 32.116 NaN 141040 35 0 13828 0.261 + 22258 QPDDHAATTSL 11 42 578.2674754701683 1154.5203980071365 2 578.2673950195312 MULTI HCD FTMS 0 0 0 4802 67515.5546875 0.6088946767528252 4 -0.09296035766601562 2 Unmodified _QPDDHAATTSL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 5.296884461304476 0.39569033063702824 2 STT 3 9 18.188 0 0 1.5753 0 0 148.1247814073302 714.2481783502561 862.3729597575864 0 0 0 0 0 0 0 0.5 0 STT 1.5753 - 43 + NaN NaN 110127.8 NaN 2800 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4805 32.12 NaN 106610 35 0 21681 0.261 + 16062 LPSNDSSKF 9 42 497.7455122761927 993.4764716191854 2 497.745361328125 MULTI HCD FTMS 0 0 0 4802 62277.9140625 0.8265103180389629 -2 0.0431976318359375 3 Unmodified _LPSNDSSKF_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 29.84058131909904 0.11198220037953927 2 {I|L}P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}M 5 6 38.456 0 0 3.8708 0 0 0 392.18036829166255 392.18036829166255 18.278324880759484 0 0 0 0 1 0 0.7742275032520141 0 {I|L}P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}M 3.8708 - 49 + NaN NaN 104679.3 NaN 2801 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4806 32.123 NaN 60415 35 0 13456 0.262 + 4148 ETMHEVLATCP 11 28 410.85481205599086 1229.5426067681726 3 410.85467529296875 MULTI HCD FTMS 0 0 0 4802 17023.958984375 0.5825722396522907 -4 0.08637237548828125 4 Unmodified _ETMHEVLATCP_ REV__ENSG00000104976|ENST00000221573|SNAPC2 7.0370850670814 0.388058401935362 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 94807.5 NaN 2802 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4807 32.126 NaN 37528 35 0 6693.7 0.261 + 17767 MEKGSIMLDRE 11 19 436.87918254320357 NaN 0 436.8790283203125 PEAK HCD FTMS 0 0 0 4802 11019.6298828125 0.45006127463199924 7 -0.16292572021484375 5 Unmodified _MEKGSIMLDRE_ ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;SLC4A4|p.V1042Sfs*5|1|0.3|ENSG00000080493|chr4:71563811-71563812|-/A|frameshift_variant 0.3666738066901352 0.3410799954756924 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89031.6 NaN 2803 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4808 32.13 NaN 52458 35 0 5926.8 0.261 + 8981 HPEAVQAHVL 10 35 550.7961494261205 1099.5777459190408 2 550.7962646484375 MULTI HCD FTMS 0 0 0 4802 11585.0732421875 0.5665707761013087 -4 0.08637237548828125 6 Unmodified _HPEAVQAHVL_ ENSG00000187024|ENST00000543175|PTRH1 10.799506525563784 0.4100970765206026 2 V{I|L} 2 8 20.969 0 0 1.907 0 0 869.4132460238434 0 869.4132460238434 0 1.5051499783199063 0 0 0 0 0 0 0 + V{I|L} 1.907 + + 5 NaN NaN 108888.6 NaN 2804 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4809 32.133 NaN 17226 35 0 4117.6 0.261 + 8815 HKDRYYKY 8 14 586.79443359375 NaN 0 586.79443359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HKDRYYKY_ REV__ENSG00000147596|ENST00000276594|PRDM14 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87252.2 NaN 2805 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4810 32.136 NaN 47475 35 0 7750.3 0.261 + 9358 HPSKSRFVH 9 32 547.7955477983994 1093.5765426635987 2 548.7985229492188 MULTI HCD FTMS 0 0 0 4802 5948.935546875 0.5968785255183596 2 -0.049800872802734375 8 Unmodified _HPSKSRFVH_ REV__ENSG00000115339|ENST00000392701|GALNT3 2.302733041254933 0.33356062215410776 2 {[QS]|[NT]}{I|L} 3 -1 10.458 0 0 0.95627 0 0 0 762.3955782525999 762.3955782525999 8.863781092484688 0 0 0 0 0 0 0 0 {[QS]|[NT]}{I|L} 0.95627 - 11 + NaN NaN 87579.2 NaN 2806 2002 4802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4812 32.141 NaN 233810 35 0 44315 0.327 -1 GQRCCCCW 8 60 508.17170162865585 1014.3288503241117 2 508.1716613769531 MULTI HCD FTMS 0 0 0 4811 93912.046875 0.7808251825390985 -2 0.053180694580078125 1 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 5.230669730166228 0.5342319408533849 2 AVT{M(Oxidation (M))|F} 4 -1 18.672 0 0 1.8408 0 0 578.1269398419937 0 578.1269398419937 0 5.4414534154732035 0 0 0 0.6989700043360187 0 0 0 AVT{M(Oxidation (M))|F} 1.8408 - 18 NaN NaN 134693.4 NaN 2807 2003 4811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4813 32.146 NaN 54755 35 0 5028.8 0.261 + 627 APGSRRWPQ 9 32 527.7800385602495 1053.545524187299 2 527.7796020507812 MULTI HCD FTMS 0 0 0 4811 27413.310546875 0.5096017692046276 6 -0.1330413818359375 2 Unmodified _APGSRRWPQ_ ENST00000474511.1_1_1:16270449-16270866:-|nuORF 2.302733041254933 0.33356062215410776 2 {I|L} 1 9 3.9794 0 0 0.37772 0 0 231.16565684159394 706.2703951471311 937.436051988725 0 0 0 0 0 0 0 0 0 {I|L} 0.37772 - 8 + NaN NaN 92293 NaN 2808 2003 4811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4814 32.149 NaN 81772 35 0 9518.5 0.261 -1 MGHSATPEL 9 33 500.7239044168945 999.4332559005891 2 500.7238464355469 MULTI HCD FTMS 0 0 0 4811 36812.62109375 0.22024585095948723 11 -0.21607208251953125 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 6.723162845929126 0.3000504726104499 2 E{I|L} 2 -1 19.464 0 0 1.9475 0 0 739.293260642775 0 739.293260642775 0 13.979400086720375 0 0 0 0 0 0 0 E{I|L} 1.9475 + + 4 NaN NaN 100321.8 NaN 2809 2003 4811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4815 32.153 NaN 105560 35 0 13516 0.261 + -1 VSPARCVMT 9 37 490.2388877582075 NaN 0 490.24713134765625 PEAK HCD FTMS 0 0 0 4811 2989.064453125 1 0 0 4 Oxidation (M) _VSPARCVM(Oxidation (M))T_ REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant 3.5964929083625545 0.27781873954207675 2 TDARV 5 -1 13.188 0 0 1.3478 0 0 170.0878250774013 263.07016931705317 433.1579943944545 0 0 0 0 0 0 0 0 0 TDARV 1.3478 - 33 + NaN NaN 95771.1 NaN 2810 2003 4811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4816 32.156 NaN 17034 35 0 4291.2 0.261 + -1 FCRRFHFE 8 13 599.7836292567721 NaN 0 599.7833251953125 PEAK HCD FTMS 0 0 0 4811 5136.32177734375 0.4889716744520816 -2 0.053180694580078125 5 Carbamidomethyl (C) _FC(Carbamidomethyl (C))RRFHFE_ REV__ENST00000282030.5_1_18:42645023-42645323:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102713 NaN 2811 2003 4811 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4818 32.161 NaN 1274100 35 0 316460 0.327 + 12979 KYIHSANVL 9 78 522.7952949095836 1043.5760368859671 2 522.7952880859375 MULTI HCD FTMS 0 0 0 4817 689247.25 0.6562272092832837 3 -0.06644439697265625 1 Unmodified _KYIHSANVL_ ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;ENSG00000141639|ENST00000400384|MAPK4;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 148.26817274609934 1.0657023776783114E-05 2 [YK]{I|L}HSANV{I|L} 9 0 + 84.804 0 0 8.1263 8.1263 92.222 0 0 0 5.6424927368725974 51.844471979274175 5.6424927368725974 9.208187539523749 0 2.0356668758921828 0 0.9559771852360797 0.805462187404089 + + [YK]{I|L}HSANV{I|L};[YK]{I|L}HSAGGV{I|L};KY{I|L}HSANV{I|L};[{M(Oxidation (M))|F}V]P{[RE]|[WV]}ANV{I|L};KY{I|L}HSAGGV{I|L};[KG]{[SA]|[TG]}{[RE]|[WV]}ANV{I|L};[YK]{I|L}HS[NG]{I|L}{I|L};{I|L}[YK]HSANV{I|L};[YK]{I|L}HSA[TP]K;[{M(Oxidation (M))|F}V]P{[RE]|[WV]}AGGV{I|L} 8.1263;7.2439;6.4824;4.8622;4.8063;4.437;4.4277;4.4032;4.1295;3.9798 +;-;+;-;-;-;-;-;-;- + 1678 NaN NaN 301165.2 NaN 2812 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4819 32.166 NaN 262610 35 0 28661 0.261 + 15952 LPPPHQPQ 8 58 457.24817387645953 912.4817948197191 2 457.2480773925781 MULTI HCD FTMS 0 0 0 4817 179192.484375 0.6704716099886032 2 -0.04315948486328125 2 Unmodified _LPPPHQPQ_ ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF 19.438996006549623 0.45076845602799126 2 KY{I|L}HVN 6 7 51.86 0 0 5.6834 0 0 0 155.04531274967033 155.04531274967033 13.900925144087779 0 0 0 0 1.305462187404089 0 0 0.3054621874040891 KY{I|L}HVN 5.6834 - 217 + NaN NaN 145785.8 NaN 2813 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4820 32.169 NaN 72998 35 0 9277.1 0.261 + 21970 QEPARAPAL 9 30 476.7646242680382 951.5146956028764 2 477.25616455078125 MULTI HCD FTMS 0 0 0 4817 4601.50537109375 0.44483374698728073 -1 0.019916534423828125 3 Unmodified _QEPARAPAL_ REV__ENSG00000167680|ENST00000586582|SEMA6B 2.0597508629832335 0.3354026079994024 2 [QP]E 3 -1 7.4473 0 0 0.78268 0 0 0 594.3363741510374 594.3363741510374 0.45757490560674974 0 0 0 0 0 0 0 0 [QP]E 0.78268 - 7 + NaN NaN 105242.6 NaN 2814 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4821 32.173 NaN 23980 35 0 5720 0.261 -1 CRMLSQRPC 9 21 583.7647171227292 1165.5148813122582 2 583.764404296875 MULTI HCD FTMS 0 0 0 4817 13777.65234375 0.48530956676874865 7 -0.14308547973632812 4 Carbamidomethyl (C),Oxidation (M) _CRM(Oxidation (M))LSQRPC(Carbamidomethyl (C))_ ENST00000605952.5_2_7:150710035-150710410:-|nuORF 2.0597508629832335 0.3354026079994024 2 G 1 -1 2.4743 0 0 0.21229 0 0 599.7858906890145 505.67466150455317 1105.4605521935678 0 0 0 0 0 0 0 0 0 G 0.21229 - 1 + NaN NaN 91090.5 NaN 2815 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4822 32.176 NaN 56995 35 0 5950 0.261 -1 AYLMMRRY 8 31 560.275116196647 1118.535679460094 2 560.2748413085938 MULTI HCD FTMS 0 0 0 4817 18397.3046875 0.4111992784798135 49 -0.9837226867675781 5 Oxidation (M) _AYLM(Oxidation (M))MRRY_ ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89904.2 NaN 2816 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4823 32.179 NaN 43084 35 0 4698.1 0.261 + 30053 VFSETDFLF 9 29 552.7656117886296 1103.516670644059 2 553.26806640625 MULTI HCD FTMS 0 0 0 4817 12529.796875 0.06804002982569211 34 -0.6104850769042969 6 Unmodified _VFSETDFLF_ REV__ENST00000460265.5_1_5:126171989-126172217:+|nuORF 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90673.4 NaN 2817 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4824 32.183 NaN 21521 35 0 4252.8 0.261 + -1 PHDENMSCEI 10 23 624.2363198391282 NaN 0 624.2364501953125 PEAK HCD FTMS 0 0 0 4817 11709.2578125 0.8214553368583609 -3 0.07309722900390625 7 Carbamidomethyl (C),Oxidation (M) _PHDENM(Oxidation (M))SC(Carbamidomethyl (C))EI_ REV__ENSG00000164776|ENST00000297373|PHKG1;REV__nc|ENSG00000164776|Q16816-2|PHKG1 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88055.3 NaN 2818 2004 4817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4826 32.188 NaN 173250 35 0 32904 0.327 + 12923 KYGPIRQI 8 38 487.7927278404663 973.5709027477326 2 487.79254150390625 MULTI HCD FTMS 0 0 0 4825 120668.359375 0.6858024108659557 4 -0.08659744262695312 1 Unmodified _KYGPIRQI_ ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF 21.74664581756881 0.4337896562907935 2 KYG 3 5 33.06 0 0 3.3957 0 0 0 622.3684302643981 622.3684302643981 12.090606190045108 0 0 0 0 0.6861818737241735 0 0 0 + KYG 3.3957 + + 12 + NaN NaN 109602 NaN 2819 2005 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4827 32.192 NaN 37468 35 0 6610 0.261 -1 FVDEHEPSM 9 23 553.7264753989185 1105.438397864637 2 553.7265014648438 MULTI HCD FTMS 0 0 0 4825 17032.80859375 0.5245368138218682 17 -0.2992668151855469 2 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 7.289230182591677 0.29575926068275815 2 C{NN|[MP]|[D{I|L}]|[EV]} 3 -1 15.458 0 0 1.3983 0 0 756.3051014630875 0 756.3051014630875 0 15.45757490560675 0 0 0 0.5 0 0 0 C{NN|[MP]|[D{I|L}]|[EV]} 1.3983 - 1 NaN NaN 86809.5 NaN 2820 2005 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4828 32.196 NaN 22989 35 0 5071.7 0.261 -1 0 18 585.0408928747138 3504.2016984486827 6 585.208251953125 MULTI HCD FTMS 0 0 0 4825 16463.75 0.6881238424383962 -2 0.046443939208984375 3 NaN NaN 2 E 1 -1 5.4846 0 0 0.15651 0 0 2484.8491726691886 887.2847994440061 3372.133972113195 0 0 0 0 0 0 0 0 0 E 0.15651 - 3 + NaN NaN 92552 NaN 2821 2005 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4829 32.199 NaN 14974 35 0 3533.3 0.261 + -1 RFFQTWPHC 9 16 639.79638671875 NaN 0 639.79638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _RFFQTWPHC(Carbamidomethyl (C))_ REV__ENSG00000006062|ENST00000344686|MAP3K14;REV__ENST00000586644.1_1_17:43348295-43350966:-|nuORF;REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99094 NaN 2822 2005 4825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4831 32.205 NaN 71396 35 0 8650.8 0.327 -1 MEQATSSSC 9 31 500.6894138810983 999.3642748289966 2 500.68914794921875 MULTI HCD FTMS 0 0 0 4830 21887.208984375 0.7752300924216003 4 -0.08658981323242188 1 Carbamidomethyl (C) _MEQATSSSC(Carbamidomethyl (C))_ ENST00000310441.11_1_X:153213093-153213690:-|nuORF 2.9952420565917617 0.3283108881486655 2 ME{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WM]{M(Oxidation (M))|F} 7 -1 + 25.462 0 0 2.5478 2.5478 87.901 0 0 0 10.8581132860661 1.7508318932272715 1.7508318932272715 25.462207055827975 0 0 0 0.4247425010840047 0 ME{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WM]{M(Oxidation (M))|F} 2.5478 - 7 + NaN NaN 102241.6 NaN 2823 2006 4830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4832 32.209 NaN 81183 35 0 6530 0.261 + 20739 PGAAAEPRAL 10 38 476.7646242680382 951.5146956028764 2 476.7645568847656 MULTI HCD FTMS 0 0 0 4830 21985.52734375 0.964651026473381 -1 0.016632080078125 2 Unmodified _PGAAAEPRAL_ ENST00000253008.2_1_9:133556683-133557598:+|nuORF 8.155526934196011 0.43213520406898465 2 [QP]E 3 8 7.4473 0 0 0.78268 0 0 0 594.3363741510374 594.3363741510374 0.45757490560674974 0 0 0 0 0 0 0 0 [QP]E 0.78268 - 18 + NaN NaN 105454.2 NaN 2824 2006 4830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4833 32.213 NaN 23863 35 0 4089.1 0.261 + 11488 IYQLYEYA 8 13 531.7603301690941 1061.5061074049881 2 531.7603149414062 MULTI HCD FTMS 0 0 0 4830 13043.3515625 0.3954153065166177 15 -0.2727928161621094 3 Unmodified _IYQLYEYA_ REV__tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 87381.4 NaN 2825 2006 4830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4834 32.216 NaN 32158 35 0 8409.4 0.261 -1 SAAAVDAGMAM 11 15 513.715169452032 1025.415785970864 2 513.7149658203125 MULTI HCD FTMS 0 0 0 4830 11322.955078125 0.15596986254933454 52 -1.0570793151855469 4 2 Oxidation (M) _SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 5.731851221503515 0.39378271418728467 2 W 1 -1 10.485 0 0 1.0225 0 0 399.2113809140147 437.11606775455317 836.3274486685679 0 0 0 0 0 0.5 0 0 0 W 1.0225 - 1 + NaN NaN 92981.3 NaN 2826 2006 4830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4835 32.219 NaN 60750 35 0 5559.3 0.261 -1 0 31 555.5453324263591 2218.152223839036 4 555.8043212890625 MULTI HCD FTMS 0 0 0 4830 10400.1298828125 0.528152053283497 -13 0.28917503356933594 5 NaN NaN 2 Q 1 -1 4.6041 0 0 0.20756 0 0 1589.8211824345424 497.2425936334594 2087.063776068002 0 0 0 0 0 0 0 0 0 Q 0.20756 - 4 + NaN NaN 86799.2 NaN 2827 2006 4830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4836 32.222 NaN 42021 35 0 6936.7 0.261 -1 MPQDRTEE 8 32 511.21660190709866 1020.4186508809973 2 511.2167053222656 MULTI HCD FTMS 0 0 0 4830 8546.716796875 0.6821546915722172 -7 0.1626739501953125 6 Oxidation (M) _M(Oxidation (M))PQDRTEE_ ENSG00000135220|ENST00000251566|UGT2A3 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83843.9 NaN 2828 2006 4830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4838 32.228 NaN 1713600 35 0 531400 0.327 + 18817 NADPQAVTM 9 63 481.71613286382154 961.4177127944431 2 481.71612548828125 MULTI HCD FTMS 0 0 0 4837 1025488.3125 0.8859656644434838 2 -0.046680450439453125 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 133.0521902211835 0.0004198702180815479 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 98.416 0 0 10.237 10.237 97.594 0 0 0 9.72185028113077 9.72185028113077 9.72185028113077 24.72185028113077 0 2.774227503252014 1.154901959985743 0.5941876774005248 1.4308845489566888 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};{[QG]|[NA]}D[QA]PVT{M(Oxidation (M))|F};{[QG]|[NA]}DVV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[PS];[QP]{[ES]|[DT]|[{I|L}C]}{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F};[WP]{[ES]|[DT]|[{I|L}C]}PY[PS] 10.237;7.6652;2.6442;1.0685;1.0365 +;-;-;-;- + 280 NaN NaN 340696.6 NaN 2829 2007 4837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4839 32.232 NaN 367030 35 0 32466 0.261 + 9866 IADEEQKAL 9 85 508.76655768509636 1015.5185624369927 2 508.7664489746094 MULTI HCD FTMS 0 0 0 4837 141490 0.9530430016324751 -1 0.023284912109375 2 Unmodified _IADEEQKAL_ ENSG00000166326|ENST00000299413|TRIM44;ENST00000532066.1_1_11:35745832-35827932:+|nuORF 63.227496030279354 0.01306643085373406 2 {I|L}ADEEQKA{I|L} 9 0 + 86.186 0 0 8.4869 8.4869 92.75 0 0 0 76.72196741330231 9.889917747712644 9.889917747712644 9.208187539523749 0 2.473197507588033 1.5228787452803376 1.6382104921644451 0 + + {I|L}ADEEQKA{I|L};{I|L}ADEE[AG]KA{I|L};[{I|L}A]DEEQKA{I|L};{I|L}ADE[{I|L}T][NG]A{I|L};[{I|L}A]DEEQAK{I|L};[{I|L}A]DEE[AG]KA{I|L};[{I|L}A]DEG{[CP]|[EA]}KA{I|L};[{I|L}A]DEE[AG]AK{I|L};[{I|L}A]DEG{[QS]|[NT]}{I|L}A{I|L};[{I|L}A]DEG{[CP]|[EA]}AK{I|L} 8.4869;7.5801;6.159;5.4862;5.2709;5.2523;4.5401;4.3642;3.9918;3.6521 +;-;+;-;-;-;-;-;-;- + 489 + NaN NaN 136424.4 NaN 2830 2007 4837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4840 32.236 NaN 133030 35 0 29483 0.261 + 10500 IPEGNEKAL 9 36 485.76371447353034 969.5128760138607 2 485.7635192871094 MULTI HCD FTMS 0 0 0 4837 96734.8828125 0.9977559874916125 3 -0.06330490112304688 3 Unmodified _IPEGNEKAL_ ENSG00000143387|ENST00000271651|CTSK 12.240655878213236 0.2545997876781172 2 {I|L}PE 3 6 24.055 0 0 2.4811 0 0 0 627.3095186822874 627.3095186822874 8.596981436199014 0 0 0 0 0 0 0.3252574989159953 0 + {I|L}PE 2.4811 + + 27 + NaN NaN 108795.7 NaN 2831 2007 4837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4841 32.239 NaN 109810 35 0 24968 0.261 + 4277 EVISPDTTER 10 27 573.7858468433258 1145.5571407534514 2 573.7857055664062 MULTI HCD FTMS 0 0 0 4837 48417.4375 0.6734585210199604 1 -0.0233154296875 4 Unmodified _EVISPDTTER_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 18.373094154950223 0.33925629317698053 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 4 6 40.674 0 0 3.5506 0 0 0 714.3058545271987 714.3058545271987 29.436974992327123 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}S 3.5506 + + 8 + NaN NaN 103920.6 NaN 2832 2007 4837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4842 32.242 NaN 20987 35 0 4396.5 0.261 + 19059 NEEQPHELSP 10 15 590.2674888038351 1178.5204246744702 2 590.26806640625 MULTI HCD FTMS 0 0 0 4837 4591.92236328125 0.07711499056080583 15 -0.2593498229980469 5 Unmodified _NEEQPHELSP_ REV__ENSG00000137275|ENST00000259808|RIPK1;REV__nc|ENSG00000137275|Q13546-2|RIPK1 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92041.2 NaN 2833 2007 4837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4843 32.246 NaN 43727 35 0 8333.1 0.263 + 12157 KKKKKKKKKSF 11 25 469.3285295826401 NaN 0 469.3288269042969 PEAK HCD FTMS 0 0 0 4837 7066.8583984375 0.5055393041790321 -75 1.5378837585449219 6 Unmodified _KKKKKKKKKSF_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88324.4 NaN 2834 2007 4837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4845 32.251 NaN 169080 35 0 24521 0.327 + 18943 NAFSMFMH 8 40 492.7072375654312 983.3999221976625 2 492.7071533203125 MULTI HCD FTMS 0 0 0 4844 93182.59375 0.7633193211296927 3 -0.053325653076171875 1 Unmodified _NAFSMFMH_ ENST00000298125.6_1_13:52158687-52249327:+|nuORF 13.50788311687929 0.4944073034352369 2 NAD 3 6 47.224 0 0 4.8021 0 0 0 680.2695146512831 680.2695146512831 20.457574905606748 0 0 0 0 0.8807196863200843 1.5228787452803376 0 0 NAD 4.8021 - 32 + NaN NaN 108089 NaN 2835 2008 4844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4846 32.256 NaN 56008 35 0 7828.1 0.261 + 22259 QPDDHAATTSL 11 27 578.2674754701683 1154.5203980071365 2 578.2674560546875 MULTI HCD FTMS 0 0 0 4844 35023.59765625 0.315863244734204 10 -0.17640304565429688 2 Unmodified _QPDDHAATTSL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 1.1933415558491238 0.4136870758253112 2 STT 3 9 16.198 0 0 1.403 0 0 148.12154654404895 714.2497042291624 862.3712507732114 0 0 0 0 0 0 0 0 0 STT 1.403 - 8 + NaN NaN 101391.1 NaN 2836 2008 4844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4847 32.259 NaN 83469 35 0 23610 0.262 -1 HKLDSPTM 8 22 472.7281222505522 943.4416915679044 2 472.7287902832031 MULTI HCD FTMS 0 0 0 4844 40697.0546875 0.48818413491036267 -3 0.063232421875 3 Oxidation (M) _HKLDSPTM(Oxidation (M))_ ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF 21.74664581756881 0.4337896562907935 2 {I|L}T{M(Oxidation (M))|F} 3 -1 40.445 0 0 4.287 0 0 564.2653065412125 0 564.2653065412125 0 33.455612550363796 0 0 0 1 0 0.4247425010840047 0 {I|L}T{M(Oxidation (M))|F} 4.287 - 10 NaN NaN 95780.2 NaN 2837 2008 4844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4848 32.263 NaN 69639 35 0 7762 0.261 + 8597 HAYDGKDYI 9 36 541.2509741522754 1080.4873953713507 2 541.251220703125 MULTI HCD FTMS 0 0 0 4844 24189.05078125 0.5164160919348517 -3 0.063232421875 4 Unmodified _HAYDGKDYI_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H 22.65808497894818 0.16459551161911185 2 {[YD]|[{M(Oxidation (M))|F}M]}[HA][KG]DY{I|L} 9 4 + 44.103 0 0 4.0817 4.0817 83.492 0 0 0 5.969100130080555 16.478174818886373 5.969100130080555 5.969100130080555 0 0.5 1.6989700043360187 0.5 0 {[YD]|[{M(Oxidation (M))|F}M]}[HA][KG]DY{I|L};[HA]{[YD]|[{M(Oxidation (M))|F}M]}[KG]DY{I|L} 4.0817;3.5293 -;+ + 21 NaN NaN 99359.1 NaN 2838 2008 4844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4849 32.266 NaN 43206 35 0 5409.7 0.261 + 26020 SPEEKQEML 9 26 545.7579746134921 1089.5013962937842 2 545.7574462890625 MULTI HCD FTMS 0 0 0 4844 35785.96484375 0.1861318621697174 9 -0.15967178344726562 5 Unmodified _SPEEKQEML_ ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 7.608950283845883 0.29333554423920943 2 M{I|L} 2 7 20.969 0 0 1.9247 0 0 827.3641834943375 0 827.3641834943375 0 20.969100130080562 0 0 0 0 0 0 0 + M{I|L} 1.9247 + + 2 NaN NaN 95659.2 NaN 2839 2008 4844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4850 32.269 NaN 12605 35 0 4479.5 0.261 + -1 STGFAKEYKSC 11 12 639.2957147921159 NaN 0 639.3137817382812 PEAK HCD FTMS 0 0 0 4844 5237.9091796875 0.9723730533821597 -2 0.046600341796875 6 Carbamidomethyl (C) _STGFAKEYKSC(Carbamidomethyl (C))_ REV__ENSG00000157429|ENST00000288177|ZNF19;REV__nc|ENSG00000157429|P17023-2|ZNF19 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103932.6 NaN 2840 2008 4844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4852 32.275 NaN 72586 35 0 12488 0.327 + 16063 LPSNDSSKF 9 35 497.7455122761927 993.4764716191854 2 497.74554443359375 MULTI HCD FTMS 0 0 0 4851 45419.2109375 0.6027730222203421 5 -0.08303070068359375 1 Unmodified _LPSNDSSKF_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 18.373094154950223 0.20161688160436167 2 {I|L}P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AR 6 7 33.02 0 0 3.3237 0 0 0 296.0873201959594 296.0873201959594 14.168950068207451 0 0 0 0 0.7614393726401688 0 0 0 {I|L}P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AR 3.3237 - 24 + NaN NaN 93587.7 NaN 2841 2009 4851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4853 32.279 NaN 29410 35 0 5060.2 0.261 + 5347 FFSYRISAF 9 23 569.2889082181366 1136.5632635030731 2 569.7902221679688 MULTI HCD FTMS 0 0 0 4851 5553.52099609375 0.3294725443288113 7 -0.11635208129882812 2 Unmodified _FFSYRISAF_ ENST00000239231.6_1_5:167976533-167976707:-|nuORF 7.289230182591677 0.29575926068275815 2 A 1 8 2.2185 0 0 0.19519 0 0 135.06107952045437 927.4535006158811 1062.5145801363356 0 0 0 0 0 0 0 0 0 + A 0.19519 + + 3 + NaN NaN 80217 NaN 2842 2009 4851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4854 32.282 NaN 120540 35 0 8937.2 0.261 -1 0 50 528.9265980229065 1583.7579646689196 3 529.2614135742188 MULTI HCD FTMS 0 0 0 4851 35776.265625 0.15458448719612322 -6 0.1330413818359375 3 NaN NaN 2 SYTD 4 -1 25.266 0 0 1.5953 0 0 786.4027856463548 328.16181360416255 1114.5645992505174 0 0 0 0 0 0.4247425010840047 0 0.6861818737241735 0 SYTD 1.5953 - 37 + NaN NaN 97491.8 NaN 2843 2009 4851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4855 32.286 NaN 64633 35 0 7892.8 0.261 + 20832 PHTSYRNLL 9 42 550.7961494261205 1099.5777459190408 2 551.2977294921875 MULTI HCD FTMS 0 0 0 4851 7536.08447265625 0.5009595673634271 1 -0.01662445068359375 4 Unmodified _PHTSYRNLL_ DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant;ENSG00000130158|ENST00000294618|DOCK6 4.3292370932331545 0.3181982124262546 2 VH 2 8 9.464 0 0 0.86069 0 0 149.10676363269448 711.3221529596311 860.4289165923255 0 0 0 0 0 0 0 0 0 VH 0.86069 - 8 + NaN NaN 92451.9 NaN 2844 2009 4851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4857 32.291 NaN 452010 35 0 112600 0.327 + 12980 KYIHSANVL 9 60 522.7952949095836 1043.5760368859671 2 522.7952880859375 MULTI HCD FTMS 0 0 0 4856 230982.03125 0.21991628368741659 9 -0.16635894775390625 1 Unmodified _KYIHSANVL_ ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;ENSG00000141639|ENST00000400384|MAPK4;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 69.33821966488729 0.009302356455414924 2 HSANV{I|L} 6 3 69.672 0 0 6.6763 0 0 404.24189955879064 0 404.24189955879064 0 54.26599703664159 0 0 0 1.610924374808178 0 0.6747425010840047 0.805462187404089 + HSANV{I|L} 6.6763 + + 219 NaN NaN 149198.6 NaN 2845 2010 4856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4858 32.296 NaN 52954 35 0 6152.3 0.261 + 18640 MYDDIAHS 8 33 476.1983557913529 NaN 0 476.197998046875 PEAK HCD FTMS 0 0 0 4856 16985.90234375 0.8964393345216752 -12 0.26592254638671875 2 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 2 D 1 7 5.4846 0 0 0.57709 0 0 408.15042144423086 424.18305383853755 832.3334752827684 0 0 0 0 0 0 0 0 0 + D 0.57709 + + 5 + NaN NaN 94650.1 NaN 2846 2010 4856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4859 32.299 NaN 16318 35 0 4689.9 0.261 + 35339 YWRLYQFAF 9 16 647.32421875 NaN 0 647.32421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YWRLYQFAF_ ENSG00000163285|ENST00000295452|GABRG1;GABRG1|p.D265Efs*32|1|0.11|ENSG00000163285|chr4:46058338-46058339|-/T|frameshift_variant;GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90912.8 NaN 2847 2010 4856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4861 32.305 NaN 100240 35 0 11144 0.327 + 30850 VQNGVHIF 8 41 457.24817387645953 912.4817948197191 2 457.24798583984375 MULTI HCD FTMS 0 0 0 4860 46276.93359375 0.17315106869664015 9 -0.16304397583007812 1 Unmodified _VQNGVHIF_ REV__ENSG00000128654|ENST00000249442|MTX2;REV__ENST00000420864.5_1_2:177135134-177202389:+|nuORF;REV__nc|ENSG00000128654|O75431-2|MTX2 2.302733041254933 0.5385759549224092 2 V 1 -1 6.9897 0 0 0.76601 0 0 272.1090053683503 538.2770479791624 810.3860533475126 0 0 0 0 0 0 0 0 0 V 0.76601 + + 2 + NaN NaN 117035 NaN 2848 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4862 32.309 NaN 42726 35 0 7185.6 0.261 -1 HVTQEDFEM 9 30 576.2374246596213 1150.4602963860425 2 576.237060546875 MULTI HCD FTMS 0 0 0 4860 27790.380859375 0.09986858372683675 21 -0.3676795959472656 2 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 20.41453444215458 0.18397929046831515 2 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 -1 48.928 0 0 4.2529 0 0 594.2734242169937 0 594.2734242169937 0 41.938200260161125 0 0 0 1.4247425010840047 0 0.4247425010840047 0 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.2529 + + 18 NaN NaN 91599 NaN 2849 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4863 32.312 NaN 53572 35 0 5013.2 0.261 -1 AYLMMRRY 8 29 560.275116196647 1118.535679460094 2 560.2747802734375 MULTI HCD FTMS 0 0 0 4860 20487.66015625 0.45792094097966624 56 -1.20465087890625 3 Oxidation (M) _AYLM(Oxidation (M))MRRY_ ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 85045.5 NaN 2850 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4864 32.316 NaN 36907 35 0 4573.5 0.261 + 19030 NDFKNYSAF 9 27 553.2490979486985 NaN 0 553.2671508789062 PEAK HCD FTMS 0 0 0 4860 4453.00537109375 0.5815369925491122 5 -0.08639144897460938 4 Unmodified _NDFKNYSAF_ REV__ENSG00000103546|ENST00000568943|SLC6A2;REV__nc|ENSG00000103546|P23975-2|SLC6A2;REV__nc|ENSG00000103546|P23975-3|SLC6A2;REV__SLC6A2|p.C339F|1|0.4|ENSG00000103546|chr16:55694107-55694107|G/T|missense_variant 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88901.2 NaN 2851 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4865 32.319 NaN 20292 35 0 5491.5 0.261 -1 VCVRDSTGEL 10 15 589.2796364340339 NaN 0 589.2780151367188 PEAK HCD FTMS 0 0 0 4860 8193.169921875 0.6053758182774185 -12 0.2625999450683594 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))VC(Carbamidomethyl (C))VRDSTGEL_ ENST00000489606.5_1_3:52280576-52282310:+|nuORF 2.735195868890462 0.33784334045437464 2 E 1 -1 6.9897 0 0 0.59409 0 0 131.09928931549922 913.3889864557249 1044.4882757712242 0 0 0 0 0 0 0 0 0 E 0.59409 + + 1 + NaN NaN 89231 NaN 2852 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4866 32.322 NaN 11936 35 0 3898.7 0.261 -1 HIRNEFMRC 9 11 639.7971801757812 NaN 0 639.7971801757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _HIRNEFM(Oxidation (M))RC(Carbamidomethyl (C))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90657.7 NaN 2853 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4867 32.326 NaN 43605 35 0 7578.8 0.264 + -1 PPSDRTDK 8 22 479.2347026736276 NaN 0 479.22271728515625 PEAK HCD FTMS 0 0 0 4860 4661.17822265625 0.5214947600830625 1 -0.026622772216796875 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PPSDRTDK_ REV__chr6:29724448-30491137|124|31.4|0.58|5.75|+|1|HLA-F,HLA-E|1 0.7936320650641473 0.38822285293237185 2 Y 1 -1 5.4846 0 0 0.57342 0 0 590.3294079333897 200.03721033267814 790.3666182660678 0 0 0 0 0 0 0 0 0 Y 0.57342 - 1 + NaN NaN 88256.2 NaN 2854 2011 4860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4869 32.331 NaN 86657 35 0 14843 0.327 + 18993 NASQLITQR 9 23 515.7857526263041 1029.556952319408 2 515.78564453125 MULTI HCD FTMS 0 0 0 4868 40577.4140625 0.3189295299532515 -5 0.10326385498046875 1 Unmodified _NASQLITQR_ ENSG00000215021|ENST00000535923|PHB2;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2 23.789781309258295 0.1548179064208189 2 {[QG]|[NA]}SQ{I|L}{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 33.178 0 0 3.2225 3.2225 85.527 0 0 0 27.69340915973786 5.6424927368726046 5.6424927368726046 9.208187539523756 0 0.9247425010840047 0 0.3807196863200844 0 + + {[QG]|[NA]}SQ{I|L}{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]};{[QG]|[NA]}S[AG]{I|L}{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 3.2225;2.3282 +;- + 24 + NaN NaN 94309.3 NaN 2855 2012 4868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4870 32.336 NaN 27351 35 0 3401.6 0.261 -1 MCVLRMTRA 9 29 569.2889082181366 1136.5632635030731 2 569.7898559570312 MULTI HCD FTMS 0 0 0 4868 6241.96875 0.37031593598547236 10 -0.15608596801757812 2 Carbamidomethyl (C) _MC(Carbamidomethyl (C))VLRMTRA_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 1.6526216038709556 0.33848895094777925 2 T{[QV]|[N{I|L}]|[RA]|[KV]} 3 -1 7.4473 0 0 0.65525 0 0 790.3678116981888 0 790.3678116981888 0 0.45757490560674974 0 0 0 0 0 0 0 T{[QV]|[N{I|L}]|[RA]|[KV]} 0.65525 + + 7 + NaN NaN 78048.5 NaN 2856 2012 4868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4872 32.341 NaN 26127 35 0 4033 0.327 + 17652 LYYQYLEA 8 20 531.7603301690941 1061.5061074049881 2 532.2615356445312 MULTI HCD FTMS 0 0 0 4871 6862.65234375 0.318813990375363 20 -0.3477325439453125 1 Unmodified _LYYQYLEA_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__ENST00000458716.2_1_8:77616323-77620415:+|nuORF;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-3|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109761.1 NaN 2857 2013 4871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4873 32.345 NaN 32789 35 0 4476.3 0.261 -1 FVDEHEPSM 9 23 553.7264753989185 1105.438397864637 2 553.7266235351562 MULTI HCD FTMS 0 0 0 4871 8610.005859375 0.26515093007746077 25 -0.4307861328125 2 Oxidation (M) _FVDEHEPSM(Oxidation (M))_ ENSG00000165030|ENST00000297689|NFIL3 1.844237919475145 0.33703635659052655 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.49614 0 0 756.3082536769401 186.0732363336547 942.3814900105948 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.49614 - 1 + NaN NaN 87956.3 NaN 2858 2013 4871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4874 32.349 NaN 40935 35 0 5587 0.262 + 28163 TKIFSPPE 8 24 459.7509139209208 NaN 0 459.7506408691406 PEAK HCD FTMS 0 0 0 4871 7983.6826171875 0.7474804633391027 31 -0.5873489379882812 3 Unmodified _TKIFSPPE_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;REV__TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 P 1 -1 6.9897 0 0 0.76183 0 0 361.67765684399166 455.72263513736567 817.4002919813573 0 0 0 0 0 0 0 0 0 P 0.76183 + + 2 + NaN NaN 86329.1 NaN 2859 2013 4871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4875 32.352 NaN 19242 35 0 4269.4 0.261 + 32506 WFVYHIIY 8 17 570.7949916873603 NaN 0 570.7944946289062 PEAK HCD FTMS 0 0 0 4871 5142.40380859375 0.3615463351477862 10 -0.1691741943359375 4 Unmodified _WFVYHIIY_ ENST00000280258.5_1_11:86519997-86520249:+|nuORF 0.7936320650641473 0.38822285293237185 2 D 1 8 6.9897 0 0 0.61336 0 0 209.10132263077668 812.4297579400999 1021.5310805708766 0 0 0 0 0 0 0 0 0 D 0.61336 - 1 + NaN NaN 93328.1 NaN 2860 2013 4871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4877 32.358 NaN 1362600 35 0 427900 0.327 + 18818 NADPQAVTM 9 64 481.71613286382154 961.4177127944431 2 481.7161560058594 MULTI HCD FTMS 0 0 0 4876 747849.6875 0.6461011180854284 9 -0.15271759033203125 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 100.0907132914201 0.004261551473353346 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 90.582 0 0 9.4217 9.4217 98.919 0 0 0 5.440228147639203 5.440228147639203 5.440228147639203 78.18205088429579 0 2.805462187404089 1.154901959985743 0 1.5114393726401687 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};[QP]{[ES]|[DT]|[{I|L}C]}{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F};[QP][KG]EEQ{M(Oxidation (M))|F} 9.4217;1.2897;1.059 +;-;- + 218 NaN NaN 300496.6 NaN 2861 2014 4876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4878 32.362 NaN 187430 35 0 29908 0.261 + -1 QDDCHHGM 8 48 508.17170162865585 1014.3288503241117 2 508.1715393066406 MULTI HCD FTMS 0 0 0 4876 67911.5 0.5646454437798024 9 -0.15271759033203125 2 Carbamidomethyl (C),Oxidation (M) _QDDC(Carbamidomethyl (C))HHGM(Oxidation (M))_ REV__ENST00000514567.5_1_5:145883057-145883965:+|nuORF 0.7936320650641473 0.540814922690045 2 T{M(Oxidation (M))|F} 2 -1 21.454 0 0 2.1151 0 0 748.2368531090711 0 748.2368531090711 0 17.47425010840047 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.1151 - 14 + NaN NaN 109485 NaN 2862 2014 4876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4879 32.366 NaN 88033 35 0 17458 0.261 + 3326 EEKPNNPEF 9 38 552.2537695466787 1102.4929861601572 2 552.2532348632812 MULTI HCD FTMS 0 0 0 4876 26102.041015625 0.32203661145043266 -4 0.06640625 3 Unmodified _EEKPNNPEF_ ENSG00000119917|ENST00000371818|IFIT3 6.2057823575117 0.30397260197431997 2 {I|L} 1 9 3.4949 0 0 0.317 0 0 662.303668388476 324.08310877017817 986.3867771586542 0 0 0 0 0 0 0 0 0 {I|L} 0.317 - 10 + NaN NaN 117782.6 NaN 2863 2014 4876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4880 32.369 NaN 9426.4 35 0 4733.6 0.261 -1 0 7 585.0408928747138 3504.2016984486827 6 585.20849609375 MULTI HCD FTMS 0 0 0 4876 6451.3642578125 0.269643159186435 7 -0.1197967529296875 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82775.5 NaN 2864 2014 4876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4881 32.372 NaN 40537 35 0 9002.7 0.262 + -1 VLMVCVFM 8 32 479.2347026736276 NaN 0 479.23486328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _VLM(Oxidation (M))VCVFM_ REV__ENST00000261220.13_2_12:95897841-95897919:+|nuORF 0.7936320650641473 0.38822285293237185 2 E 1 -1 3.0989 0 0 0.324 0 0 676.2621777087803 148.12421594791252 824.3863936566928 0 0 0 0 0 0 0 0 0 E 0.324 - 1 + NaN NaN 89578.6 NaN 2865 2014 4876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4883 32.378 NaN 62862 35 0 12406 0.327 + -1 LVSTFMTR 8 27 485.7527235690835 NaN 0 485.7636413574219 PEAK HCD FTMS 0 0 0 4882 2451.785888671875 0.8466184293698302 1 -0.013332366943359375 1 Oxidation (M) _LVSTFM(Oxidation (M))TR_ REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF 8.593279151180031 0.38822285293237185 2 PE 2 -1 12.959 0 0 1.3367 0 0 113.06312581869936 627.3066500299436 740.369775848643 0 0 0 0 0 0 0 0.3494850021680094 0 PE 1.3367 - 13 + NaN NaN 92635.7 NaN 2866 2015 4882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4884 32.382 NaN 330010 35 0 64527 0.261 + 25768 SLEHKTQTP 9 37 520.7722041752857 1039.5298554173712 2 520.772216796875 MULTI HCD FTMS 0 0 0 4882 27313.27734375 0.23448889381939478 -9 0.17298507690429688 2 Unmodified _SLEHKTQTP_ ENSG00000165055|ENST00000262432|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;nc|ENSG00000165055|Q6P1Q9-2|METTL2B 3.5964929083625545 0.32375295897743744 2 [PA]Q 3 8 7.4473 0 0 0.71641 0 0 0 740.3583681211303 740.3583681211303 7.447274948966937 0 0 0 0 0 0 0 0 [PA]Q 0.71641 - 2 + NaN NaN 135503.9 NaN 2867 2015 4882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4885 32.386 NaN 40459 35 0 8692 0.261 + 25451 SEVILHHEY 9 32 563.7800392399284 NaN 0 563.7793579101562 PEAK HCD FTMS 0 0 0 4882 11716.0029296875 1 0 0 3 Unmodified _SEVILHHEY_ ENSG00000144028|ENST00000323853|SNRNP200 6.723162845929126 0.26266733336404485 2 V{I|L} 2 7 9.464 0 0 0.84083 0 0 216.06745045075678 694.2957857721311 910.363236222888 0 0 0 0 0 0 0 0 0 + V{I|L} 0.84083 + + 3 + NaN NaN 94334.3 NaN 2868 2015 4882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4887 32.391 NaN 124040 35 0 17813 0.327 -1 0 39 492.7072375654312 983.3999221976625 2 492.70697021484375 MULTI HCD FTMS 0 0 0 4886 94373.234375 0.7730726340286957 11 -0.18479537963867188 1 NaN NaN 2 {[QG]|[NA]}D 3 -1 38.486 0 0 3.9136 0 0 0 680.2711434713531 680.2711434713531 12.160677999045717 0 0 0 0 1 1.3979400086720375 0 0.7059771852360797 {[QG]|[NA]}D 3.9136 - 22 NaN NaN 101761.4 NaN 2869 2016 4886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4888 32.395 NaN 222710 35 0 21283 0.261 + 4110 ESTPITAVK 9 56 473.2663484532932 944.5181439733864 2 473.2659912109375 MULTI HCD FTMS 0 0 0 4886 63782.91015625 0.8879333606173956 -1 0.013332366943359375 2 Unmodified _ESTPITAVK_ ENSG00000181789|ENST00000314797|COPG1 16.149105407346934 0.22083165093524068 2 T{I|L}{[QG]|[NA]}{I|L}T{M(Oxidation (M))|F} 7 7 26.969 0 0 2.8553 0 0 166.1209834719254 0 166.1209834719254 0 -6.113555222196119 -6.113555222196119 0 0 0 0 0.6747425010840047 0 T{I|L}{[QG]|[NA]}{I|L}T{M(Oxidation (M))|F} 2.8553 - 99 + NaN NaN 127125.8 NaN 2870 2016 4886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4889 32.399 NaN 31294 35 0 5115.2 0.261 -1 HAACCFLFL 9 17 541.2509741522754 1080.4873953713507 2 541.2509155273438 MULTI HCD FTMS 0 0 0 4886 17332.78515625 0.37004053005979437 5 -0.08647537231445312 3 Carbamidomethyl (C) _HAAC(Carbamidomethyl (C))CFLFL_ ENST00000429976.5_2_3:36868431-36868629:-|nuORF 5.230669730166228 0.3113646817964458 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94602.2 NaN 2871 2016 4886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4890 32.402 NaN 26232 35 0 5684.3 0.261 + -1 PVCICVGMI 9 21 545.7579746134921 1089.5013962937842 2 545.7572631835938 MULTI HCD FTMS 0 0 0 4886 14544.6572265625 0.0756504441341933 17 -0.2979545593261719 4 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))PVC(Carbamidomethyl (C))IC(Carbamidomethyl (C))VGMI_ REV__ENSG00000009694|ENST00000371130|TENM1;REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1;REV__TENM1|p.T606I|1|0.72|ENSG00000009694|chrX:124645202-124645202|G/A|missense_variant 2.302733041254933 0.33356062215410776 2 M{I|L} 2 -1 19.464 0 0 1.7865 0 0 827.3671131818375 0 827.3671131818375 0 19.463950151760656 0 0 0 0 0 0 0 M{I|L} 1.7865 + + 1 NaN NaN 94172.1 NaN 2872 2016 4886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4891 32.405 NaN 14580 35 0 3573.1 0.261 + -1 RHWCFRCI 8 14 589.2796364340339 NaN 0 589.2803955078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _RHWC(Carbamidomethyl (C))FRCI_ REV__ENSG00000080802|ENST00000541284|CNOT4;REV__nc|ENSG00000080802|O95628-2|CNOT4;REV__nc|ENSG00000080802|O95628-3|CNOT4;REV__nc|ENSG00000080802|O95628-4|CNOT4;REV__nc|ENSG00000080802|O95628-5|CNOT4;REV__nc|ENSG00000080802|O95628-6|CNOT4;REV__nc|ENSG00000080802|O95628-7|CNOT4;REV__nc|ENSG00000080802|O95628-8|CNOT4;REV__nc|ENSG00000080802|O95628-9|CNOT4;REV__nc|ENSG00000080802|O95628|CNOT4 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86603.4 NaN 2873 2016 4886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4893 32.411 NaN 76271 35 0 10733 0.327 -1 KYLEERAMRQF 11 28 496.2538874322882 NaN 0 496.25384521484375 PEAK HCD FTMS 0 0 0 4892 13354.51953125 0.15155715990687282 36 -0.7342910766601562 1 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.339244926269168 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108380.4 NaN 2874 2017 4892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4894 32.415 NaN 36827 35 0 4396 0.261 -1 DTVTMQVTAR 10 27 569.2814766833677 1136.5484004335353 2 569.2804565429688 MULTI HCD FTMS 0 0 0 4892 7857.52880859375 0.2924914582096611 -8 0.1363067626953125 2 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 9.5439744041441 0.42184090036563754 2 {[ES]|[DT]|[{I|L}C]}VT 4 -1 16.198 0 0 1.4252 0 0 0 717.3366182916624 717.3366182916624 15.713337517843655 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}VT 1.4252 + + 4 + NaN NaN 98465.7 NaN 2875 2017 4892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4895 32.419 NaN 74784 35 0 17810 0.264 + 33174 YERPYSRYD 9 38 416.8607250132487 1247.5603456399463 3 416.8606262207031 MULTI HCD FTMS 0 0 0 4892 2527.86865234375 0.20217703672351883 1 -0.01673126220703125 3 Unmodified _YERPYSRYD_ REV__ENSG00000182872|ENST00000377604|RBM10;REV__nc|ENSG00000182872|P98175-2|RBM10;REV__nc|ENSG00000182872|P98175-3|RBM10;REV__nc|ENSG00000182872|P98175-4|RBM10;REV__nc|ENSG00000182872|P98175-5|RBM10 0.6014990680409731 0.3464572424761564 2 E 1 -1 4.6041 0 0 0.36905 0 0 983.4449414424838 132.04537378482658 1115.4903152273105 0 0 0 0 0 0 0 0 0 E 0.36905 + + 3 + NaN NaN 96991.2 NaN 2876 2017 4892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4896 32.422 NaN 20822 35 0 2475.4 0.261 -1 KYMEDYHQF 9 17 638.7689724258269 1275.5233919184536 2 639.2701416015625 MULTI HCD FTMS 0 0 0 4892 10387.2109375 0.389080111295928 -4 0.069732666015625 4 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 5.296884461304476 0.3108627248283497 2 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.384569236525 0 982.384569236525 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 3 NaN NaN 90964.1 NaN 2877 2017 4892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4898 32.428 NaN 688540 35 0 42304 0.327 -1 0 94 528.9265980229065 1583.7579646689196 3 528.9265747070312 MULTI HCD FTMS 0 0 0 4897 268184.0625 1 0 0 1 NaN NaN 2 ADTYS{M(Oxidation (M))|F}GPA[HM]K 12 -1 101.22 0 0 6.3911 0 0 260.14827162910314 0 260.14827162910314 0 86.32490073712319 0 0 0 3.353917193908117 0 2.3169015600442577 0 ADTYS{M(Oxidation (M))|F}GPA[HM]K 6.3911 - 5346 NaN NaN 188591.2 NaN 2878 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4899 32.432 NaN 217100 35 0 48816 0.261 + 22842 QYLSFMKK 8 52 522.7815049781074 NaN 0 522.7952880859375 PEAK HCD FTMS 0 0 0 4897 5349.0869140625 0.6374347854370911 -1 0.01673126220703125 2 Unmodified _QYLSFMKK_ REV__tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1 5.731851221503515 0.38822285293237185 2 VNASH 5 -1 21.23 0 0 2.0344 0 0 131.06742602244066 401.2188734334195 532.2862994558602 0 0 0 0 0 0 0 0 0.3807196863200844 VNASH 2.0344 - 57 + NaN NaN 114654.3 NaN 2879 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4900 32.436 NaN 122190 35 0 10192 0.262 -1 KYMEDYHQF 9 50 426.1816589650415 1275.5231474953246 3 426.515869140625 MULTI HCD FTMS 0 0 0 4897 20903.439453125 0.3179783472315051 -6 0.09645462036132812 3 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 12.174745833636585 0.2551692358394414 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.724 0 0 1110.4442575800886 0 1110.4442575800886 0 14.771212547196624 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.724 + + 16 + NaN NaN 122044.4 NaN 2880 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4901 32.439 NaN 43834 35 0 6802.2 0.261 + -1 DICNVRLLDMT 11 29 436.87918254320357 NaN 0 436.87872314453125 PEAK HCD FTMS 0 0 0 4897 14443.771484375 0.5899093049295786 23 -0.427520751953125 4 Oxidation (M) _DICNVRLLDM(Oxidation (M))T_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9-2|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 0.40826533853263924 0.34096201227758716 2 H 1 -1 1.2591 0 0 0.14443 0 0 549.8349814420728 181.82464014224846 731.6596215843213 0 0 0 0 0 0 0 0 0 H 0.14443 - 1 + NaN NaN 84476.1 NaN 2881 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4902 32.442 NaN 59294 35 0 7429.3 0.261 + 214 AEVAAEKSF 9 26 476.2428116016276 950.4710702700552 2 476.2421875 MULTI HCD FTMS 0 0 0 4897 17575.09765625 0.6128674338954591 -4 0.07000732421875 5 Unmodified _AEVAAEKSF_ ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22 21.590151480376914 0.17382222009858564 2 {[CP]|[EA]}VQD 5 6 27.703 0 0 2.9147 0 0 0 405.2125002839802 405.2125002839802 23.098943791441968 0 0 0 0 1 0 0 0 {[CP]|[EA]}VQD 2.9147 - 27 NaN NaN 86312.3 NaN 2882 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4903 32.445 NaN 17849 35 0 4490.3 0.261 -1 HPTDVDYRVM 10 15 624.7877100523971 1247.560867171594 2 624.7879638671875 MULTI HCD FTMS 0 0 0 4897 5055.58447265625 0.118066090775438 35 -0.717559814453125 6 Oxidation (M) _HPTDVDYRVM(Oxidation (M))_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89980.2 NaN 2883 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4904 32.449 NaN 22165 35 0 4826.7 0.262 -1 LLMACHCT 8 16 511.21660190709866 1020.4186508809973 2 511.21636962890625 MULTI HCD FTMS 0 0 0 4897 4715.54833984375 0.3763706578573134 5 -0.08271026611328125 7 2 Carbamidomethyl (C),Oxidation (M) _LLM(Oxidation (M))AC(Carbamidomethyl (C))HC(Carbamidomethyl (C))T_ ENSG00000238205|ENST00000423387|MPC1L 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 106477 NaN 2884 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4905 32.452 NaN 33433 35 0 9639.2 0.261 + 32546 WHWARRYG 8 22 566.2837645833603 1130.5529762335204 2 566.2843627929688 MULTI HCD FTMS 0 0 0 4897 2254.84814453125 0.3160285968532019 -4 0.07000732421875 8 Unmodified _WHWARRYG_ ENSG00000133247|ENST00000255613|KMT5C 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83698.5 NaN 2885 2018 4897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4907 32.458 NaN 59225 35 0 6555.2 0.327 + 9264 HPLSDHEATL 10 28 560.275116196647 1118.535679460094 2 560.2750854492188 MULTI HCD FTMS 0 0 0 4906 14353.6494140625 0.3208192929818105 64 -1.4081497192382812 1 Unmodified _HPLSDHEATL_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 6.723162845929126 0.4397169348982109 2 C{I|L} 2 9 22.959 0 0 2.0526 0 0 884.42973525215 0 884.42973525215 0 17.47425010840047 0 0 0 0.5 0 0 0 C{I|L} 2.0526 - 4 NaN NaN 97096.7 NaN 2886 2019 4906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4908 32.462 NaN 37461 35 0 5539.5 0.261 -1 DTVTMQVTAR 10 21 569.2814766833677 1136.5484004335353 2 569.2828979492188 MULTI HCD FTMS 0 0 0 4906 16084.525390625 0.5987361167507063 -6 0.1164093017578125 2 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 8.444304893310646 0.4306066564229251 2 {[ES]|[DT]|[{I|L}C]}VT 4 -1 16.198 0 0 1.4252 0 0 0 717.3319796197874 717.3319796197874 4.208187539523749 0 0 0 0 0 0 0 0 {[ES]|[DT]|[{I|L}C]}VT 1.4252 + + 5 + NaN NaN 91322.6 NaN 2887 2019 4906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4910 32.467 NaN 163590 35 0 23155 0.327 + 18994 NASQLITQR 9 44 515.7857526263041 1029.556952319408 2 515.78564453125 MULTI HCD FTMS 0 0 0 4909 77470.1875 0.6088985968082908 3 -0.042743682861328125 1 Unmodified _NASQLITQR_ ENSG00000215021|ENST00000535923|PHB2;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2 65.47368725323818 0.010552856507075443 2 {[QG]|[NA]}SQ{I|L}{I|L}TQR 9 0 + 73.923 0 0 7.1801 7.1801 90.6 0 0 0 56.78514638884933 17.275071725447404 17.275071725447404 9.208187539523749 0 1.805462187404089 1.5228787452803376 0 1.079689690656103 + + {[QG]|[NA]}SQ{I|L}{I|L}TQR;{[QG]|[NA]}SQ{I|L}{I|L}T[AG]R;{[QG]|[NA]}S[AG]{I|L}{I|L}TQR 7.1801;6.2857;6.2857 +;-;- + 63 + NaN NaN 125620.7 NaN 2888 2020 4909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4911 32.472 NaN 106090 35 0 20693 0.261 + 35286 YVVTDHGS 8 32 439.2063027174684 876.3980525017369 2 439.218505859375 MULTI HCD FTMS 0 0 0 4909 9715.2529296875 0.2165870239966922 -6 0.10997390747070312 2 Unmodified _YVVTDHGS_ ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-3|EGFR;nc|ENSG00000146648|P00533-4|EGFR 2.8892196856762586 0.5377058178582064 2 T{I|L} 2 7 20.969 0 0 2.3926 0 0 644.246873924025 0 644.246873924025 0 8.494850021680094 0 0 0 0 0 0 0 T{I|L} 2.3926 - 10 NaN NaN 111690.1 NaN 2889 2020 4909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4913 32.477 NaN 916710 35 0 289210 0.327 + 18819 NADPQAVTM 9 49 481.71613286382154 961.4177127944431 2 481.71600341796875 MULTI HCD FTMS 0 0 0 4912 530089 0.45796782603427466 16 -0.28116607666015625 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 110.5527297667825 0.0028521687250969148 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 91.265 0 0 9.4927 9.4927 89.711 0 0 0 5.518951286913577 5.518951286913577 5.518951286913577 1.249387366082999 0 2.7302046884880937 1.0969100130080565 0.3252574989159953 1.086696871556164 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F};{[QG]|[NA]}D[PG]AAVT{M(Oxidation (M))|F};{[QG]|[NA]}D[PG][Q{I|L}]T{M(Oxidation (M))|F};[QP][DN]AAVT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[HD]AAVT{M(Oxidation (M))|F};{[QG]|[NA]}D[PG][{I|L}T]Q{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[HD][Q{I|L}]T{M(Oxidation (M))|F};[QP][DN][Q{I|L}]T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[HD][{I|L}T]Q{M(Oxidation (M))|F};[QP][DN][{I|L}T]Q{M(Oxidation (M))|F} 9.4927;9.3628;6.006;5.8124;5.4987;4.4431;2.8819;2.4612;1.0013;0.89834 +;-;-;-;-;-;-;-;-;- + 267 NaN NaN 219359.2 NaN 2890 2021 4912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4914 32.482 NaN 16083 35 0 3112.6 0.261 + -1 QLSVIVKCAQ 10 20 573.3194471891645 1144.624341445129 2 573.3187866210938 MULTI HCD FTMS 0 0 0 4912 6490.25146484375 0.7830063216460385 -3 0.0497894287109375 2 Carbamidomethyl (C) _QLSVIVKC(Carbamidomethyl (C))AQ_ REV__ENSG00000157343|ENST00000373866|ARMC12;REV__nc|ENSG00000157343|Q5T9G4-2|ARMC12;REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12 1.4819007175156935 0.4674597685733628 2 {I|L} 1 -1 6.9897 0 0 0.61065 0 0 427.23611009922894 601.2752779596311 1028.5113880588601 0 0 0 0 0 0 0 0 0 {I|L} 0.61065 + + 1 + NaN NaN 86983.2 NaN 2891 2021 4912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4916 32.487 NaN 174950 35 0 37451 0.327 + 3327 EEKPNNPEF 9 35 552.2537695466787 1102.4929861601572 2 552.253662109375 MULTI HCD FTMS 0 0 0 4915 75079.8984375 0.9263059569319351 4 -0.0684661865234375 1 Unmodified _EEKPNNPEF_ ENSG00000119917|ENST00000371818|IFIT3 18.1463463914782 0.20357593197100715 2 [EP]{M(Oxidation (M))|F} 3 6 22.932 0 0 2.08 0 0 0 726.3071395627541 726.3071395627541 7.447274948966935 0 0 0 0 0 1.3979400086720375 0 0 + [EP]{M(Oxidation (M))|F} 2.08 + + 12 NaN NaN 107431.9 NaN 2892 2022 4915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4917 32.491 NaN 160140 35 0 19487 0.261 -1 GQRCCCCW 8 52 508.17170162865585 1014.3288503241117 2 508.1715087890625 MULTI HCD FTMS 0 0 0 4915 53720.34375 0.446654062076707 17 -0.3212738037109375 2 Carbamidomethyl (C) _GQRC(Carbamidomethyl (C))CCCW_ ENST00000356810.5_1_20:62290811-62293793:+|nuORF;ENST00000370018.7_1_20:62290811-62293901:+|nuORF;ENST00000488316.1_1_20:62290811-62293163:+|nuORF;ENST00000508582.6_1_20:62290811-62293901:+|nuORF 0.6903765706972694 0.5409681170271811 2 VQEA 4 -1 18.928 0 0 1.8661 0 0 198.87991707110945 385.2183016412719 584.0982187123814 0 0 0 0 0 0 0 0 0 VQEA 1.8661 - 23 + NaN NaN 106174.8 NaN 2893 2022 4915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4918 32.495 NaN 69349 35 0 7263.4 0.261 + 34640 YPSEQEKAL 9 36 532.7665631364629 1063.5185733397257 2 532.7664794921875 MULTI HCD FTMS 0 0 0 4915 27100.755859375 0.27073246902405257 -5 0.07636260986328125 3 Unmodified _YPSEQEKAL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 36.506200033944 0.08138327636155518 2 YP 2 7 41.198 0 0 3.8737 0 0 0 800.3823671346368 800.3823671346368 14.955678082598922 0 0 0 0 0.5 1.5228787452803376 0 0 + YP 3.8737 + + 11 + NaN NaN 93938.8 NaN 2894 2022 4915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4919 32.498 NaN 74274 35 0 8146.6 0.261 -1 SSGPVDPMM 9 41 476.6911297716007 951.3677066100014 2 476.6910095214844 MULTI HCD FTMS 0 0 0 4915 8918.1005859375 0.04957286217098046 -44 0.8902091979980469 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 {[CP]|[EA]}VAGD 6 -1 20.155 0 0 2.1186 0 0 0 406.11273769814517 406.11273769814517 6.660546934575464 0 0 0 0 0.8807196863200843 0 0 0 {[CP]|[EA]}VAGD 2.1186 - 40 NaN NaN 101616.6 NaN 2895 2022 4915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4920 32.502 NaN 32086 35 0 4302.5 0.261 -1 RYRQEWMDY 9 27 454.8671380491338 NaN 0 454.8669128417969 PEAK HCD FTMS 0 0 0 4915 13932.015625 0.7353189124129171 39 -0.8544235229492188 5 Oxidation (M) _RYRQEWM(Oxidation (M))DY_ ENSG00000161381|ENST00000315392|PLXDC1;ENST00000394318.7_1_17:37224095-37235479:-|nuORF 0.235843874597859 0.29410397576755687 2 C 1 -1 2.2185 0 0 0.2444 0 0 350.8641456277614 450.8373201959594 801.7014658237208 0 0 0 0 0 0 0 0 0 C 0.2444 - 1 + NaN NaN 94409 NaN 2896 2022 4915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4921 32.505 NaN 51555 35 0 8429.6 0.261 + 28798 TTSELLSSR 9 28 497.26432132575303 NaN 0 497.2639465332031 PEAK HCD FTMS 0 0 0 4915 10537.2802734375 0.8935438076555173 -6 0.09631729125976562 6 Unmodified _TTSELLSSR_ ENSG00000166444|ENST00000313726|DENND2B;ENST00000530559.5_1_11:8728764-8737359:-|nuORF;nc|ENSG00000166444|P78524-2|DENND2B;nc|ENSG00000166444|P78524-3|DENND2B 2.9952420565917617 0.2807323172627736 2 T 1 8 3.9794 0 0 0.40094 0 0 394.72632223959357 493.7246492975219 888.4509715371155 0 0 0 0 0 0 0 0 0 + T 0.40094 + + 2 + NaN NaN 92501.3 NaN 2897 2022 4915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4923 32.51 NaN 31834 35 0 4956.8 0.327 -1 0 20 485.76371447353034 969.5128760138607 2 485.7635498046875 MULTI HCD FTMS 0 0 0 4922 12491.0517578125 0.12883689232954332 19 -0.3648529052734375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93524.5 NaN 2898 2023 4922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4925 32.518 NaN 300200 35 0 25905 0.327 + 21851 QAVQEATRL 9 64 508.2800793010747 1014.5456056689494 2 508.280029296875 MULTI HCD FTMS 0 0 0 4924 110077.65625 0.10199975977470249 -7 0.10695648193359375 1 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 45.739877483867886 0.03899552410870734 2 [QA]VQEATR{I|L} 9 0 + 52.681 0 0 5.1926 5.1926 87.226 0 0 0 23.70384018084792 11.39506772603255 11.39506772603255 9.208187539523749 0 1.055462187404089 0 0.3252574989159953 0 + + [QA]VQEATR{I|L};[QA]V[AG]EATR{I|L} 5.1926;4.285 +;- + 185 + NaN NaN 129687.4 NaN 2899 2024 4924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4926 32.522 NaN 91780 35 0 14190 0.261 + 22030 QGCWACLGF 9 44 492.7072375654312 983.3999221976625 2 492.7072448730469 MULTI HCD FTMS 0 0 0 4924 45003.8984375 0.36865624599017066 19 -0.3939476013183594 2 Unmodified _QGCWACLGF_ ENST00000562410.5_1_16:75579850-75589867:-|nuORF 13.50788311687929 0.24365122550260465 2 {[QG]|[NA]}D 3 7 32.988 0 0 3.3545 0 0 0 680.2698617330718 680.2698617330718 13.167790332608575 0 0 0 0 1 1.2218487496163564 0 0.3807196863200844 {[QG]|[NA]}D 3.3545 - 9 NaN NaN 95104.4 NaN 2900 2024 4924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4927 32.53 NaN 48868 35 0 8392.1 0.261 + 26490 SVDPQSAPGP 10 28 477.73005407890986 953.4455552246197 2 477.7300720214844 MULTI HCD FTMS 0 0 0 4924 13444.2587890625 0.5152668372929423 -4 0.050258636474609375 3 Unmodified _SVDPQSAPGP_ REV__ENSG00000029725|ENST00000537505|RABEP1;REV__nc|ENSG00000029725|Q15276-2|RABEP1;REV__RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant 8.155526934196011 0.43213520406898465 2 [VS]D 3 -1 32.447 0 0 3.4032 0 0 0 649.2970064752561 649.2970064752561 32.447274948966935 0 0 0 0 0.5 1.6989700043360187 0 0 [VS]D 3.4032 + + 3 + NaN NaN 89270.1 NaN 2901 2024 4924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4928 32.534 NaN 21665 35 0 3978.2 0.261 + -1 FENELLWMVC 10 17 452.8699333952826 NaN 0 452.86944580078125 PEAK HCD FTMS 0 0 0 4924 9683.8125 0.4357294278047449 75 -1.7612724304199219 4 Carbamidomethyl (C),Oxidation (M) _FENELLWM(Oxidation (M))VC(Carbamidomethyl (C))_ REV__ENSG00000051341|ENST00000264233|POLQ;REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;REV__POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 0.15932191953741626 0.34004793154798674 2 {M(Oxidation (M))|F} 1 -1 2.2185 0 0 0.24548 0 0 556.2727209391996 197.40166650943596 753.6743874486356 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.24548 + + 1 + NaN NaN 94692.1 NaN 2902 2024 4924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4929 32.537 NaN 33963 35 0 3227 0.261 + -1 CGPRTGCKSR 10 23 589.7809077385674 NaN 0 589.7973022460938 PEAK HCD FTMS 0 0 0 4924 6891.0869140625 1 0 0 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GPRTGC(Carbamidomethyl (C))KSR_ REV__ENST00000244576.8_1_6:27356605-27356827:+|nuORF 1.1933415558491238 0.33916295405077446 2 P 1 -1 2.4743 0 0 0.21012 0 0 734.8156779265504 342.6540926568969 1077.4697705834474 0 0 0 0 0 0 0 0 0 P 0.21012 + + 3 + NaN NaN 89744.7 NaN 2903 2024 4924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4931 32.542 NaN 22667 35 0 5311.7 0.327 + 26281 SREGCSSLPEI 11 15 589.2796364340339 NaN 0 589.2792358398438 PEAK HCD FTMS 0 0 0 4930 7493.021484375 0.5536433463149403 1 -0.013355255126953125 1 Unmodified _SREGCSSLPEI_ nc|ENSG00000100503|Q8N4C6-6|NIN 2.498486711656943 0.3350326561941647 2 S 1 10 5.4846 0 0 0.46616 0 0 619.2389470850616 467.2430819147094 1086.482028999771 0 0 0 0 0 0 0 0 0 + S 0.46616 + + 1 + NaN NaN 86430.5 NaN 2904 2025 4930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4932 32.547 NaN 35413 35 0 5276 0.261 + -1 LPHGNEPLM 9 25 512.2497710045802 1022.4849890759605 2 512.2509765625 MULTI HCD FTMS 0 0 0 4930 11124.958984375 0.8406921596385246 -4 0.06495285034179688 2 Oxidation (M) _LPHGNEPLM(Oxidation (M))_ REV__ENSG00000064547|ENST00000407877|LPAR2 5.731851221503515 0.3075653528928475 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88587.9 NaN 2905 2025 4930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4933 32.55 NaN 26533 35 0 9588.2 0.261 + 7052 FQFPSFFY 8 17 541.7523916674393 NaN 0 541.7530517578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FQFPSFFY_ ENST00000562210.1_1_16:71512659-71516017:-|nuORF 0.7936320650641473 0.38822285293237185 2 Y 1 7 2.4743 0 0 0.22878 0 0 759.1086824053879 156.28782068424064 915.3965030896285 0 0 0 0 0 0 0 0 0 + Y 0.22878 + + 1 + NaN NaN 99972.8 NaN 2906 2025 4930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4935 32.556 NaN 252450 35 0 28694 0.327 + 3510 EIASFDKAKLK 11 53 417.2432925033725 1248.7080481103176 3 417.24322509765625 MULTI HCD FTMS 0 0 0 4934 107423.265625 0.6452912976156631 -4 0.0684661865234375 1 Unmodified _EIASFDKAKLK_ ENSG00000034510|ENST00000233143|TMSB10 21.590151480376914 0.2689667140516965 2 ANK 3 9 21.682 0 0 1.7364 0 0 917.5315964146422 0 917.5315964146422 0 10.713337517843655 0 0 0 0 0 0 0 ANK 1.7364 - 28 NaN NaN 131861.6 NaN 2907 2026 4934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4936 32.56 NaN 181430 35 0 8436 0.261 -1 0 61 528.9265980229065 1583.7579646689196 3 528.9266357421875 MULTI HCD FTMS 0 0 0 4934 73311.671875 0.2733632684641728 8 -0.14983749389648438 2 NaN NaN 2 TGQAK[YR]D 8 -1 44.334 0 0 2.7993 0 0 0 661.2860811822874 661.2860811822874 18.416375079047498 0 0 0 0 0.8494850021680094 0 0.5 0.5 TGQAK[YR]D 2.7993 - 101 + NaN NaN 116933.6 NaN 2908 2026 4934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4937 32.564 NaN 136730 35 0 27265 0.261 + -1 KIYKIGCY 8 34 522.7815049781074 NaN 0 522.7952270507812 PEAK HCD FTMS 0 0 0 4934 6398.63134765625 0.7625058754348462 6 -0.11650466918945312 3 Carbamidomethyl (C) _KIYKIGC(Carbamidomethyl (C))Y_ REV__ENSG00000136156|ENST00000647800|ITM2B;REV__ITM2B-RB1|3|fusion 2.302733041254933 0.38822285293237185 2 K 1 -1 10.797 0 0 1.0346 0 0 131.0679724528672 781.3584078424436 912.4263802953108 0 0 0 0 0 0 0 0 0.3807196863200844 K 1.0346 + + 3 + NaN NaN 100517.6 NaN 2909 2026 4934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4938 32.567 NaN 44592 35 0 7017.1 0.261 -1 KYMEDYHQF 9 23 638.7689724258269 1275.5233919184536 2 638.7689208984375 MULTI HCD FTMS 0 0 0 4934 24590.755859375 0.6387359665933695 4 -0.07326889038085938 4 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 10.799506525563784 0.2670509983294061 2 Q{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.977 0 0 982.3818996500204 0 982.3818996500204 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 Q{M(Oxidation (M))|F} 1.977 + + 5 NaN NaN 90159.7 NaN 2910 2026 4934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4939 32.57 NaN 38695 35 0 8709.4 0.262 -1 YDKDNCQR 8 32 549.7348717275952 NaN 0 549.7349243164062 PEAK HCD FTMS 0 0 0 4934 4859.9716796875 0.47600833754029936 3 -0.056606292724609375 5 Carbamidomethyl (C) _YDKDNC(Carbamidomethyl (C))QR_ ENSG00000263639|ENST00000582163|MSMB 0.6903765706972694 0.38822285293237185 2 T 1 -1 0.3786 0 0 0.034498 0 0 834.112033638981 159.2695711725219 993.3816048115028 0 0 0 0 0 0 0 0 0 T 0.034498 - 1 + NaN NaN 89147.3 NaN 2911 2026 4934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4941 32.576 NaN 183600 35 0 12073 0.327 -1 KYMEDYHQF 9 65 426.1816589650415 1275.5231474953246 3 426.181640625 MULTI HCD FTMS 0 0 0 4940 59000.4921875 0.5362722825949567 4 -0.0765228271484375 1 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 18.721224879955976 0.19860910938195908 2 D 1 -1 13.539 0 0 1.0615 0 0 567.2372110712996 590.2365299721316 1157.4737410434313 0 0 0 0 0 0.805462187404089 0 0 0 D 1.0615 + + 22 + NaN NaN 117195.6 NaN 2912 2027 4940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4942 32.58 NaN 34853 35 0 5259.5 0.261 -1 DTVTMQVTAR 10 26 569.2814766833677 1136.5484004335353 2 569.2810668945312 MULTI HCD FTMS 0 0 0 4940 17608.568359375 0.6554676364387196 2 -0.036594390869140625 2 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 6.630372943996041 0.44020808660041416 2 {I|L}NT{[QV]|[N{I|L}]|[RA]|[KV]} 5 -1 22.971 0 0 2.0211 0 0 563.2268805134166 0 563.2268805134166 0 22.971062485323515 0 0 0 0.4247425010840047 0 0 0 {I|L}NT{[QV]|[N{I|L}]|[RA]|[KV]} 2.0211 - 26 + NaN NaN 93923.9 NaN 2913 2027 4940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4943 32.584 NaN 66751 35 0 11512 0.261 -1 KYLEERAMRQF 11 33 496.2538874322882 NaN 0 496.2542724609375 PEAK HCD FTMS 0 0 0 4940 6137.30810546875 0.06965080127081222 46 -1.0800323486328125 3 Oxidation (M) _KYLEERAM(Oxidation (M))RQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.339244926269168 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93417 NaN 2914 2027 4940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4944 32.587 NaN 83200 35 0 8155.7 0.261 + 23904 RSVEDLQWS 9 42 560.275116196647 1118.535679460094 2 560.2733154296875 MULTI HCD FTMS 0 0 0 4940 7368.2900390625 0.1646890997979237 72 -1.7033882141113281 4 Unmodified _RSVEDLQWS_ ENSG00000105447|ENST00000253237|GRWD1 4.897010918128616 0.31389406404703984 2 D 1 8 12.474 0 0 1.1152 0 0 532.2652459657564 468.2204989068969 1000.4857448726534 0 0 0 0 0 0.8494850021680094 0 0 0 + D 1.1152 + + 11 + NaN NaN 91930.8 NaN 2915 2027 4940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4946 32.592 NaN 48053 35 0 11812 0.326 + 18995 NASQLITQR 9 22 515.7857526263041 1029.556952319408 2 515.7857055664062 MULTI HCD FTMS 0 0 0 4945 31990.533203125 0.25143853922558085 11 -0.216156005859375 1 Unmodified _NASQLITQR_ ENSG00000215021|ENST00000535923|PHB2;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;ENST00000544888.5_1_12:7077022-7079603:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2 7.101721422024254 0.29718071671418667 2 {[QG]|[NA]}SQ 4 5 14.693 0 0 1.4271 0 0 0 626.3629244440061 626.3629244440061 14.69273760456403 0 0 0 0 0 0 0 0 + {[QG]|[NA]}SQ 1.4271 + + 3 + NaN NaN 94283.2 NaN 2916 2028 4945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4947 32.597 NaN 50426 35 0 5566.7 0.261 + 7322 FTYPFPETRFL 11 29 473.24340212125344 1416.7083769639603 3 473.2429504394531 MULTI HCD FTMS 0 0 0 4945 20727.796875 0.7852645433624161 1 -0.019954681396484375 2 Unmodified _FTYPFPETRFL_ ENSG00000168070|ENST00000301896|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN 2.2527281973983926 0.4090409658946738 2 T{M(Oxidation (M))|F} 2 9 17.959 0 0 1.2676 0 0 1150.6147012821227 0 1150.6147012821227 0 10.969100130080562 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.2676 - 4 + NaN NaN 86799.1 NaN 2917 2028 4945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4948 32.6 NaN 42659 35 0 4919.6 0.261 + 25862 SMPIPTKVP 9 35 485.2737640581621 NaN 0 485.2613220214844 PEAK HCD FTMS 0 0 0 4945 4636.81884765625 1 0 0 3 Unmodified _SMPIPTKVP_ REV__ENSG00000182771|ENST00000327946|GRID1;REV__nc|ENSG00000182771|Q9ULK0-2|GRID1 4.3292370932331545 0.2742679634796037 2 G 1 -1 0.48455 0 0 0.050029 0 0 501.3162221087086 407.1807955377563 908.4970176464649 0 0 0 0 0 0 0 0 0 G 0.050029 - 3 + NaN NaN 81971.1 NaN 2918 2028 4945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4949 32.604 NaN 30275 35 0 5866.4 0.261 + 10631 IPSILAQAQ 9 15 470.77682106155464 939.5390891899093 2 470.7767028808594 MULTI HCD FTMS 0 0 0 4945 13313.6142578125 0.5957230993361162 -2 0.036651611328125 4 Unmodified _IPSILAQAQ_ ENSG00000167634|ENST00000588756|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;nc|ENSG00000167634|Q8WX94|NLRP7;NLRP7|p.D272Tfs*16|1|0.31|ENSG00000167634|chr19:54940005-54940005|C/-|frameshift_variant 6.2057823575117 0.30397260197431997 2 {I|L}PS 3 6 28.94 0 0 3.0803 0 0 0 639.3469942682249 639.3469942682249 28.940162615404077 0 0 0 0 0 0 0.4247425010840047 0 + {I|L}PS 3.0803 + + 3 + NaN NaN 84459.8 NaN 2919 2028 4945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4950 32.607 NaN 30370 35 0 9362.3 0.261 -1 PHSCRRYR 8 21 566.2837645833603 1130.5529762335204 2 566.282958984375 MULTI HCD FTMS 0 0 0 4945 2463.70458984375 0.3453009048425181 4 -0.07985305786132812 5 Carbamidomethyl (C) _PHSC(Carbamidomethyl (C))RRYR_ ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5 0.7936320650641473 0.540814922690045 2 M 1 -1 6.9897 0 0 0.61825 0 0 433.7324328759017 562.7533053033811 996.4857381792829 0 0 0 0 0 0 0 0 0 M 0.61825 - 2 + NaN NaN 91022.5 NaN 2920 2028 4945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4952 32.612 NaN 640650 35 0 204660 0.327 + 18820 NADPQAVTM 9 36 481.71613286382154 961.4177127944431 2 481.7159423828125 MULTI HCD FTMS 0 0 0 4951 367883.65625 0.3178313043401257 24 -0.5328559875488281 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 90.13494162714682 0.004522430935000059 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 80.666 0 0 8.3903 8.3903 97.838 0 0 0 7.015449934959719 7.015449934959719 7.015449934959719 80.66569691289537 0 2.774227503252014 0 0.3494850021680094 1.055462187404089 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 8.3903 + + 107 NaN NaN 181534.6 NaN 2921 2029 4951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4953 32.617 NaN 168210 35 0 34445 0.261 + 10389 IMWAEDHKGVE 11 39 438.87590392290116 NaN 0 438.88409423828125 PEAK HCD FTMS 0 0 0 4951 2528.34619140625 0.8891221279507138 2 -0.039928436279296875 2 Unmodified _IMWAEDHKGVE_ REV__ENSG00000122012|ENST00000502798|SV2C 4.406150317652783 0.32962116392221075 2 T 1 -1 11.237 0 0 1.2832 0 0 130.43544934795233 641.2293184869749 771.6647678349273 0 0 0 0 0 0 0 0.4247425010840047 0 T 1.2832 - 3 + NaN NaN 104722.9 NaN 2922 2029 4951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4954 32.62 NaN 144880 35 0 22683 0.261 -1 MGHSATPEL 9 27 500.7239456979693 999.4333384627387 2 500.7238464355469 MULTI HCD FTMS 0 0 0 4951 57576.203125 0.392184591111832 -7 0.12507247924804688 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 20.453626601364224 0.18364154288633264 2 E{I|L} 2 -1 29.464 0 0 2.9481 0 0 739.296755923174 0 739.296755923174 0 28.354706403678875 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E{I|L} 2.9481 + + 6 NaN NaN 110528.5 NaN 2923 2029 4951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4955 32.624 NaN 46522 35 0 8182.8 0.261 + 8164 GPPDRDPTL 9 27 484.2461779711202 966.4778030090404 2 484.2460632324219 MULTI HCD FTMS 0 0 0 4951 15556.9912109375 0.3468095373651969 -9 0.14473724365234375 4 Unmodified _GPPDRDPTL_ ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94587.1 NaN 2924 2029 4951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4957 32.629 NaN 109140 35 0 10311 0.327 + 34641 YPSEQEKAL 9 42 532.7665631364629 1063.5185733397257 2 532.7666625976562 MULTI HCD FTMS 0 0 0 4956 62383.1171875 0.6231979443387445 3 -0.059902191162109375 1 Unmodified _YPSEQEKAL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 49.52724829834842 0.03223213920720493 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L} 9 0 + 65.869 0 0 6.1935 6.1935 88.859 0 0 0 6.896512253176823 38.26151861349551 6.896512253176823 9.208187539523749 0 1.6989700043360187 1.6989700043360187 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE[AG]EKA{I|L};YP[KA]QESE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQ[KA]E{I|L} 6.1935;5.3276;4.7093;4.5678 +;-;-;- + 65 NaN NaN 107709 NaN 2925 2030 4956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4958 32.633 NaN 179290 35 0 20436 0.261 + 25102 SAEPSPTVM 9 41 467.7130570813249 933.4115612294498 2 467.7127685546875 MULTI HCD FTMS 0 0 0 4956 95321.4453125 0.3639672200119752 -8 0.14173507690429688 2 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 107.99703571036002 0.003269392969029945 2 {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F} 9 0 + 84.292 0 0 9.0306 9.0306 98.448 0 0 0 10.964015683995783 10.964015683995783 10.964015683995783 68.82962806725317 0 2.5669015600442577 1.5228787452803376 1.2302046884880937 0 + + {[SA]|[TG]}EPS[TP]V{M(Oxidation (M))|F};{[HG]|PP}{[{M(Oxidation (M))|F}D]|MM}{[NV]|[RG]}V{M(Oxidation (M))|F} 9.0306;1.6566 +;- + 113 + NaN NaN 108027.4 NaN 2926 2030 4956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4959 32.637 NaN 98629 35 0 12335 0.261 -1 FPVQQLCDI 9 38 560.2811337257865 1118.547714518373 2 560.2811279296875 MULTI HCD FTMS 0 0 0 4956 37398.0078125 0.7529213195258948 -5 0.0866241455078125 3 Carbamidomethyl (C) _FPVQQLC(Carbamidomethyl (C))DI_ ENSG00000095951|ENST00000379388|HIVEP1 13.042465956692817 0.2476723265019929 2 D 1 -1 14.732 0 0 1.3171 0 0 532.2784406920042 468.2210468184754 1000.4994875104796 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.3171 + + 13 + NaN NaN 103097 NaN 2927 2030 4956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4960 32.64 NaN 54625 35 0 8035.3 0.261 + 22142 QKDYQSFTS 9 25 552.2537695466787 1102.4929861601572 2 552.2538452148438 MULTI HCD FTMS 0 0 0 4956 22715.01953125 0.2802488860735165 12 -0.24619674682617188 4 Unmodified _QKDYQSFTS_ REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 1.844237919475145 0.33703635659052655 2 T 1 -1 3.9794 0 0 0.36095 0 0 532.7402528611323 465.6814364068969 998.4216892680292 0 0 0 0 0 0 0 0.3494850021680094 0 T 0.36095 + + 3 + NaN NaN 98831.9 NaN 2928 2030 4956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4961 32.644 NaN 19291 35 0 4946.4 0.261 + 23907 RSVPILWKNH 10 18 625.3609165748304 1248.7072802164607 2 625.3611450195312 MULTI HCD FTMS 0 0 0 4956 5152.4677734375 0.47634841682516726 1 -0.023265838623046875 5 Unmodified _RSVPILWKNH_ REV__ENSG00000143552|ENST00000368559|NUP210L;REV__nc|ENSG00000143552|Q5VU65-2|NUP210L 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83214 NaN 2929 2030 4956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4962 32.647 NaN 50069 35 0 8903.1 0.261 + 27325 SYQREPYSP 9 29 563.76186424003 1125.50917554686 2 563.7620239257812 MULTI HCD FTMS 0 0 0 4956 12645.8115234375 0.3390918380782007 -4 0.07326889038085938 6 Unmodified _SYQREPYSP_ REV__ENSG00000198353|ENST00000430889|HOXC4 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 95347 NaN 2930 2030 4956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4964 32.652 NaN 1766300 35 0 181710 0.327 + 21852 QAVQEATRL 9 98 508.2800793010747 1014.5456056689494 2 508.2801513671875 MULTI HCD FTMS 0 0 0 4963 1079195.25 1 0 0 1 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 192.32093250933514 2.3286398909669E-13 2 QAVQEAT{I|L}R 9 2 + 102.55 0 0 10.108 10.108 92.718 0 0 0 7.580196603750167 7.580196603750167 7.580196603750167 7.580196603750167 0 1.916386562212267 1.3010299956639813 0.7302046884880937 1.0044321917401078 QAVQEAT{I|L}R;[QA]VQEATR{I|L};QAV[AG]EAT{I|L}R;[QA]V[AG]EATR{I|L};QA{I|L}NEAT{I|L}R;[QA]EN{I|L}ATR{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}AQEATR{I|L};QA{I|L}GGEAT{I|L}R;[QA]EGG{I|L}ATR{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}AQEAT[VG]{I|L} 10.108;9.3609;9.2005;8.4533;8.2826;7.5499;7.4243;7.375;6.6423;6.5167 -;+;-;-;-;-;-;-;-;- + 2294 + NaN NaN 347069.8 NaN 2931 2031 4963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4965 32.657 NaN 128340 35 0 31593 0.261 -1 QSVVENCTM 9 27 513.716365868848 1025.418178804496 2 514.2290649414062 MULTI HCD FTMS 0 0 0 4963 4364.251953125 0.5249691349685829 4 -0.07327651977539062 2 Oxidation (M) _QSVVENCTM(Oxidation (M))_ ENST00000551276.1_1_12:56706564-56708983:-|nuORF 3.944395688203298 0.32111559684428237 2 A 1 -1 6.9897 0 0 0.68164 0 0 130.07073351861078 821.2884282111993 951.35916172981 0 0 0 0 0 0 0 0 0 A 0.68164 - 6 + NaN NaN 119991.8 NaN 2932 2031 4963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4966 32.66 NaN 22108 35 0 4871.5 0.261 + -1 CRHEKHEV 8 17 547.7608976723725 NaN 0 547.760986328125 PEAK HCD FTMS 0 0 0 4963 2438.1123046875 0.25544035205901156 -7 0.13440704345703125 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))RHEKHEV_ REV__ENSG00000166436|ENST00000646038|TRIM66;REV__ENST00000481014.6_1_11:8646046-8673385:-|nuORF;REV__ENST00000531498.5_1_11:8665946-8673385:-|nuORF;REV__nc|ENSG00000166436|O15016-3|TRIM66;REV__nc|ENSG00000166436|O15016|TRIM66 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93439.4 NaN 2933 2031 4963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4967 32.663 NaN 18006 35 0 3772.2 0.261 -1 HMRKRFVDP 9 16 601.3167114257812 NaN 0 601.3167114257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _HM(Oxidation (M))RKRFVDP_ ENSG00000261150|ENST00000615648|EPPK1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90026.1 NaN 2934 2031 4963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4968 32.667 NaN 23258 35 0 6965.2 0.261 + -1 HMKCEDVSEC 10 14 627.232938424558 1252.451323915916 2 627.7352294921875 MULTI HCD FTMS 0 0 0 4963 5636.40673828125 0.12629409378315076 -22 0.3776702880859375 5 Carbamidomethyl (C),Oxidation (M) _HM(Oxidation (M))KCEDVSEC(Carbamidomethyl (C))_ REV__ENSG00000268696|ENST00000600766|ZNF723;REV__ENST00000600766.1_3_19:23032061-23041232:+|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84995.3 NaN 2935 2031 4963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4970 32.672 NaN 64617 35 0 7946.4 0.327 -1 0 29 492.7072375654312 983.3999221976625 2 492.7074890136719 MULTI HCD FTMS 0 0 0 4969 31147.404296875 0.2551486768723123 27 -0.6161384582519531 1 NaN NaN 2 T{M(Oxidation (M))|F} 2 -1 19.196 0 0 1.952 0 0 717.3052845685562 0 717.3052845685562 0 1.1239565956325457 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 1.952 - 6 NaN NaN 86244.8 NaN 2936 2032 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4971 32.677 NaN 66848 35 0 11228 0.261 -1 SSGPVDPMM 9 25 476.6911297716007 951.3677066100014 2 476.69146728515625 MULTI HCD FTMS 0 0 0 4969 15800.11328125 0.08782776449195494 -34 0.6469383239746094 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 2 {I|L}D 2 -1 17.831 0 0 1.8742 0 0 314.12028336957013 406.11142908267817 720.2317124522483 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}D 1.8742 - 5 + NaN NaN 95179.2 NaN 2937 2032 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4972 32.68 NaN 19270 35 0 3854.4 0.261 + -1 QEARLRRMC 9 19 589.7975539023033 1177.5805548714065 2 589.7986450195312 MULTI HCD FTMS 0 0 0 4969 10563.9033203125 0.639316865782451 5 -0.08635330200195312 3 Oxidation (M) _QEARLRRM(Oxidation (M))C_ REV__ENSG00000159788|ENST00000336727|RGS12;REV__ENST00000502947.1_1_4:3317897-3344786:+|nuORF;REV__nc|ENSG00000159788|O14924-4|RGS12;REV__nc|ENSG00000159788|O14924-5|RGS12 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 84560.9 NaN 2938 2032 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4973 32.683 NaN 52627 35 0 6903.4 0.264 -1 0 30 410.1746260934801 409.1673496268801 1 410.1745300292969 MULTI HCD FTMS 0 0 0 4969 13371.8720703125 0.5542301138615116 15 -0.33290863037109375 4 NaN NaN 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 3 -1 + 15.686 0 0 3.8337 3.8337 87.685 0 0 0 15.686362358410124 15.686362358410124 15.686362358410124 15.686362358410124 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 3.8337 - 2 NaN NaN 89692.5 NaN 2939 2032 4969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4975 32.689 NaN 246210 35 0 26290 0.327 + 3511 EIASFDKAKLK 11 48 417.2432925033725 1248.7080481103176 3 417.24310302734375 MULTI HCD FTMS 0 0 0 4974 101170.6640625 0.6077319351045278 3 -0.046634674072265625 1 Unmodified _EIASFDKAKLK_ ENSG00000034510|ENST00000233143|TMSB10 17.44264345198275 0.3051040874848456 2 {[QN]|[E{I|L}]|[KN]}AS{M(Oxidation (M))|F} 5 6 30.713 0 0 2.4596 0 0 0 698.4185743594821 698.4185743594821 14.515449934959719 0 0 0 0 0 0 0.8494850021680094 0 + {[QN]|[E{I|L}]|[KN]}AS{M(Oxidation (M))|F} 2.4596 + + 28 + NaN NaN 124657.2 NaN 2940 2033 4974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4976 32.693 NaN 80862 35 0 7215.6 0.261 -1 0 45 528.9265980229065 1583.7579646689196 3 528.9266357421875 MULTI HCD FTMS 0 0 0 4974 36475.28515625 0.13600839966487568 15 -0.33959197998046875 2 NaN NaN 2 {[SA]|[TG]}QA 4 -1 26.995 0 0 1.7045 0 0 0 1223.5705173256051 1223.5705173256051 12.697953115119061 0 0 0 0 0.8807196863200843 0 0 0.5 {[SA]|[TG]}QA 1.7045 - 28 + NaN NaN 95900.5 NaN 2941 2033 4974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4977 32.697 NaN 125560 35 0 45892 0.261 + 18505 MRQMWFPR 8 18 576.2842978337566 1150.554042734313 2 576.2835083007812 MULTI HCD FTMS 0 0 0 4974 34231.26171875 0.6459502262026517 -2 0.0366363525390625 3 Unmodified _MRQMWFPR_ REV__ENST00000399325.2_1_X:133406709-133407198:+|nuORF 2.302733041254933 0.5385759549224092 2 E 1 -1 6.9897 0 0 0.60751 0 0 165.14301456464517 853.3522432916624 1018.4952578563075 0 0 0 0 0 0 0 0 0 E 0.60751 - 3 + NaN NaN 107809.2 NaN 2942 2033 4974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4978 32.7 NaN 75112 35 0 13369 0.262 + -1 SAEIFETC 8 35 478.704404161111 955.394255389022 2 478.7040710449219 MULTI HCD FTMS 0 0 0 4974 24038.9765625 0.6787290581999564 -5 0.09651947021484375 4 Carbamidomethyl (C) _SAEIFETC(Carbamidomethyl (C))_ REV__ENSG00000139218|ENST00000369367|SCAF11;REV__SCAF11|p.I220V|1|0.22|ENSG00000139218|chr12:45933207-45933207|T/C|missense_variant 12.531546534597751 0.5015908124873912 2 {[SA]|[TG]}E 3 -1 23.2 0 0 2.4283 0 0 0 665.2589538266441 665.2589538266441 23.19984993812689 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {[SA]|[TG]}E 2.4283 + + 4 + NaN NaN 87775.1 NaN 2943 2033 4974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4980 32.706 NaN 119670 35 0 23490 0.327 + -1 GPLLCVACLV 10 40 522.7822497487914 1043.5499465643827 2 522.7952880859375 MULTI HCD FTMS 0 0 0 4979 3489.4794921875 0.03344078939881454 -12 0.21830368041992188 1 Carbamidomethyl (C) _GPLLC(Carbamidomethyl (C))VACLV_ REV__ENSG00000137673|ENST00000260227|MMP7;REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF;REV__ENST00000533366.5_1_11:102395628-102401431:-|nuORF 1.844237919475145 0.46554186016084764 2 V 1 -1 6.9897 0 0 0.6698 0 0 131.06892048753838 810.3808045191171 941.4497250066554 0 0 0 0 0 0 0 0 0 V 0.6698 + + 12 + NaN NaN 94606.2 NaN 2944 2034 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4981 32.71 NaN 98811 35 0 9797.1 0.262 -1 KYMEDYHQF 9 57 426.1816589650415 1275.5231474953246 3 426.1815185546875 MULTI HCD FTMS 0 0 0 4979 15984.6728515625 0.14528924554390707 11 -0.25626373291015625 2 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 0.97797 0 0 1110.477323375987 0 1110.477323375987 0 12.474250108400469 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.97797 + + 6 + NaN NaN 93897.6 NaN 2945 2034 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4982 32.713 NaN 27757 35 0 6120 0.261 -1 DTVTMQVTAR 10 21 569.2814766833677 1136.5484004335353 2 569.2816772460938 MULTI HCD FTMS 0 0 0 4979 11863.3203125 0.44160447157589533 9 -0.20623779296875 3 Oxidation (M) _DTVTM(Oxidation (M))QVTAR_ ENSG00000181789|ENST00000314797|COPG1 4.189502756095605 0.45312800054222196 2 N 1 -1 11.237 0 0 0.98871 0 0 676.3114142048229 343.1736239068969 1019.4850381117199 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.98871 - 3 + NaN NaN 87458.6 NaN 2946 2034 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4983 32.717 NaN 13131 35 0 3722.1 0.261 + -1 QWVCFFCVM 9 13 638.7689724258269 1275.5233919184536 2 638.769287109375 MULTI HCD FTMS 0 0 0 4979 7468.19873046875 0.19398375398041026 12 -0.2762451171875 4 2 Carbamidomethyl (C) _QWVC(Carbamidomethyl (C))FFC(Carbamidomethyl (C))VM_ REV__ENST00000565867.2_1_16:48395883-48396060:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79666 NaN 2947 2034 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4984 32.72 NaN 123020 35 0 14102 0.263 -1 TTQFLIMM 8 54 508.7435455488021 1015.4725381644042 2 509.7460021972656 MULTI HCD FTMS 0 0 0 4979 4873.33154296875 0.591486680711383 5 -0.10297012329101562 5 2 Oxidation (M) _TTQFLIM(Oxidation (M))M(Oxidation (M))_ tr|U7STG1|U7STG1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01472PE=4SV=1 5.230669730166228 0.5342319408533849 2 VQMAT[R{I|L}] 7 -1 24.323 0 0 2.3952 0 0 198.01744479250254 0 198.01744479250254 0 10.51039906523368 0 0 0 0 0 0 0 VQMAT[R{I|L}] 2.3952 - 92 + NaN NaN 100868.5 NaN 2948 2034 4979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4986 32.726 NaN 88304 35 0 11662 0.326 + 29488 TYVHSSATI 9 38 489.7475573358375 977.480561738475 2 489.748046875 MULTI HCD FTMS 0 0 0 4985 32511.19140625 0.8117026145674456 1 -0.0099945068359375 1 Unmodified _TYVHSSATI_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 26.88365393820708 0.12808753336095696 2 [YT]V 3 6 34.705 0 0 3.5505 0 0 0 611.2779024713499 611.2779024713499 9.488474775526186 0 0 0 0 0.4247425010840047 2 0 0 + [YT]V 3.5505 + + 9 + NaN NaN 95239.7 NaN 2949 2035 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4987 32.73 NaN 55216 35 0 9588.6 0.261 + 12571 KTEYEQRIY 9 27 410.54377804236606 1228.6095047272981 3 410.5437316894531 MULTI HCD FTMS 0 0 0 4985 13722.775390625 0.3988738185608808 -11 0.20768356323242188 2 Unmodified _KTEYEQRIY_ REV__ENSG00000154240|ENST00000535342|CEP112;REV__nc|ENSG00000154240|Q8N8E3-2|CEP112 0.9622753412299311 0.3437222896773173 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92751.5 NaN 2950 2035 4985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4989 32.735 NaN 463580 35 0 147360 0.327 + 18821 NADPQAVTM 9 34 481.71613286382154 961.4177127944431 2 481.71588134765625 MULTI HCD FTMS 0 0 0 4988 245530.28125 0.2121246981726588 31 -0.7736701965332031 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 71.70789743142352 0.008535567138151097 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 75.908 0 0 7.8954 7.8954 97.038 0 0 0 3.935078169319297 3.935078169319297 3.935078169319297 75.90797194541551 0 2.8494850021680094 0 1.1549471895720984 0 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 7.8954 + + 60 + NaN NaN 160545.5 NaN 2951 2036 4988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4990 32.74 NaN 87606 35 0 18410 0.261 -1 VYCRCWRSK 9 29 438.8761681995175 NaN 0 438.8841247558594 PEAK HCD FTMS 0 0 0 4988 2076.9501953125 0.6010161307129976 1 -0.023052215576171875 2 2 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))RC(Carbamidomethyl (C))WRSK_ ENSG00000122873|ENST00000333926|CISD1 4.189502756095605 0.27494509657688126 2 V 1 -1 5.4846 0 0 0.62628 0 0 641.6011542927866 132.04526697330314 773.6464212660898 0 0 0 0 0 0 0 0 0 V 0.62628 + + 1 + NaN NaN 93690.7 NaN 2952 2036 4988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4991 32.743 NaN 68071 35 0 10806 0.261 + -1 WGCSSGSCGS 10 36 494.1685733020738 986.3225936709476 2 494.1686096191406 MULTI HCD FTMS 0 0 0 4988 32511.89453125 0.8229805419499777 -2 0.02996826171875 3 Carbamidomethyl (C) _WGC(Carbamidomethyl (C))SSGSCGS_ REV__ENST00000467530.5_1_1:85961402-85961543:-|nuORF 0 0.4753037046562868 2 P 1 -1 3.9794 0 0 0.40346 0 0 60.02054251719989 826.2347506158811 886.2552931330811 0 0 0 0 0 0 0 0 0 P 0.40346 - 5 + NaN NaN 105012.9 NaN 2953 2036 4988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4992 32.747 NaN 80165 35 0 23998 0.261 + 9583 HRTVWCRGGS 10 21 579.7843305263184 1157.5541081194367 2 579.7847290039062 MULTI HCD FTMS 0 0 0 4988 19072.388671875 0.7240505193444067 3 -0.07300186157226562 4 Unmodified _HRTVWCRGGS_ REV__ENSG00000141527|ENST00000648509|CARD14;REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96819 NaN 2954 2036 4988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4993 32.75 NaN 19463 35 0 4075.6 0.261 + 32739 WQNRKRHR 8 16 590.8324260839116 1179.6502992346232 2 590.8321533203125 MULTI HCD FTMS 0 0 0 4988 7407.2646484375 0.6337512365814205 2 -0.036418914794921875 5 Unmodified _WQNRKRHR_ ENST00000493879.5_1_X:119727931-119728081:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 80890.5 NaN 2955 2036 4988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4994 32.753 NaN 14366 35 0 4182.4 0.261 + 355 AHCVYPYKTD 10 14 598.7753404567663 1195.5361279803326 2 599.276611328125 MULTI HCD FTMS 0 0 0 4988 5811.9541015625 0.7707834496006366 -1 0.0099945068359375 6 Unmodified _AHCVYPYKTD_ REV__ENSG00000129187|ENST00000438320|DCTD;REV__nc|ENSG00000129187|P32321-2|DCTD 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89448.1 NaN 2956 2036 4988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4996 32.759 NaN 216450 35 0 39128 0.326 -1 MGHSATPEL 9 30 500.7239456979693 999.4333384627387 2 500.723876953125 MULTI HCD FTMS 0 0 0 4995 115783.546875 0.7886682435461397 1 -0.01336669921875 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))GHSATPEL_ ENST00000597611.7_3_19:18654757-18654817:-|nuORF 26.88365393820708 0.12808753336095696 2 E{I|L} 2 -1 29.464 0 0 2.9481 0 0 739.2947410779376 0 739.2947410779376 0 19.21826823685329 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E{I|L} 2.9481 + + 15 NaN NaN 125204 NaN 2957 2037 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4997 32.763 NaN 56126 35 0 6145.4 0.261 + 8165 GPPDRDPTL 9 32 484.2461779711202 966.4778030090404 2 484.24578857421875 MULTI HCD FTMS 0 0 0 4995 33353.328125 0.7435404532779054 -1 0.023052215576171875 2 Unmodified _GPPDRDPTL_ ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 8.745405648335112 0.2847203663274469 2 SV 2 9 21.198 0 0 2.1933 0 0 762.3673855548338 0 762.3673855548338 0 13.750612633917 0 0 0 0.5 0 0 0 SV 2.1933 - 3 NaN NaN 88046.6 NaN 2958 2037 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 4998 32.767 NaN 41628 35 0 8028.3 0.261 + 14451 LESQMMMC 8 29 486.68655458500996 971.3585562368199 2 486.68603515625 MULTI HCD FTMS 0 0 0 4995 9299.5673828125 0.7757091040253837 -1 0.023052215576171875 3 Unmodified _LESQMMMC_ REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84837.1 NaN 2959 2037 4995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5000 32.772 NaN 373990 35 0 47268 0.327 + 25103 SAEPSPTVM 9 48 467.7130570813249 933.4115612294498 2 467.7128601074219 MULTI HCD FTMS 0 0 0 4999 261895.6875 1 0 0 1 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 149.9946105101851 8.83195450578534E-06 2 {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F} 9 0 + 103.04 0 0 11.039 11.039 99.85 0 0 0 4.0321251377534395 4.0321251377534395 4.0321251377534395 95.77568005658885 0 3.142159058960253 1.5228787452803376 1.6549471895720984 0 + + {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F};{[HG]|PP}{[{M(Oxidation (M))|F}D]|MM}{[NV]|[RG]}V{M(Oxidation (M))|F} 11.039;0.77857 +;- + 193 + NaN NaN 141752.2 NaN 2960 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5001 32.776 NaN 100890 35 0 18060 0.261 + 30236 VIQENEHAL 9 29 526.7721738093154 1051.5297946854307 2 526.77197265625 MULTI HCD FTMS 0 0 0 4999 54894.6328125 0.269827224109134 -4 0.06638717651367188 2 Unmodified _VIQENEHAL_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant 47.594388314883695 0.03493607795751234 2 V{I|L}QEN 5 4 73.8 0 0 7.0183 0 0 0 465.2099703424438 465.2099703424438 52.830918867322296 0 0 0 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0.3807196863200844 + V{I|L}QEN 7.0183 + + 40 + NaN NaN 90941.6 NaN 2961 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5002 32.78 NaN 102880 35 0 17764 0.262 + 31249 VVRWGVPA 8 30 442.26256207688385 NaN 0 442.2480163574219 PEAK HCD FTMS 0 0 0 4999 1598.491455078125 0.833245224833209 1 -0.03658294677734375 3 Unmodified _VVRWGVPA_ ENST00000568983.5_1_16:89811164-89816202:-|nuORF 2.577480529830294 0.38822285293237185 2 PVG 3 6 16.198 0 0 1.8354 0 0 101.07694990254488 525.2678927057249 626.3448426082698 0 0 0 0 0 0 0 0 0 PVG 1.8354 - 13 + NaN NaN 107656.2 NaN 2962 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5003 32.783 NaN 42574 35 0 9968.2 0.261 + 27320 SYQPNENKF 9 24 563.76186424003 1125.50917554686 2 563.7620239257812 MULTI HCD FTMS 0 0 0 4999 19730.044921875 0.5290524206789258 4 -0.103240966796875 4 Unmodified _SYQPNENKF_ ENSG00000168143|ENST00000306858|FAM83B 22.736283301280096 0.1639198954644489 2 Q[MT] 3 8 23.952 0 0 2.1281 0 0 747.3551883374108 0 747.3551883374108 0 16.962724883926654 0 0 0 0.9247425010840047 0 0 0.4247425010840047 Q[MT] 2.1281 - 13 NaN NaN 87680.9 NaN 2963 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5004 32.787 NaN 65012 35 0 8885.5 0.261 + 22574 QSQDIFAGR 9 26 511.25672565485155 1020.4988983765031 2 511.2568359375 MULTI HCD FTMS 0 0 0 4999 24133.65625 0.5906332173586177 -3 0.046413421630859375 5 Unmodified _QSQDIFAGR_ REV__ENSG00000167325|ENST00000300738|RRM1 6.723162845929126 0.3000504726104499 2 {I|L}{M(Oxidation (M))|F}QR 4 -1 30.433 0 0 2.9822 0 0 458.1776831679211 0 458.1776831679211 0 8.214562785677657 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}QR 2.9822 - 30 + NaN NaN 88932.6 NaN 2964 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5005 32.79 NaN 46234 35 0 6517.4 0.261 -1 0 27 528.9265980229065 1583.7579646689196 3 529.2621459960938 MULTI HCD FTMS 0 0 0 4999 8221.5693359375 0.03552430801651813 23 -0.569732666015625 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.97771 0 0 1418.712125290793 0 1418.712125290793 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.97771 - 4 + NaN NaN 97341.4 NaN 2965 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5006 32.793 NaN 46686 35 0 5805.4 0.261 + 2354 DPDLGESIMK 10 34 552.765959990644 1103.5173670480879 2 553.2669677734375 MULTI HCD FTMS 0 0 0 4999 15147.0029296875 0.22551209994563468 -12 0.21622467041015625 7 Unmodified _DPDLGESIMK_ REV__ENSG00000120860|ENST00000240079|WASHC3;REV__ENST00000541569.5_1_12:102419750-102455740:-|nuORF;REV__LAMC2-CCDC53|1|fusion 2.9952420565917617 0.4594494122822477 2 {I|L} 1 -1 11.99 0 0 1.0865 0 0 663.3273473721098 324.0825289361938 987.4098763083036 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0865 + + 5 + NaN NaN 89225.8 NaN 2966 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5007 32.796 NaN 22207 35 0 5830.2 0.261 + -1 LMWCAAALL 9 14 532.7665631364629 1063.5185733397257 2 532.765869140625 MULTI HCD FTMS 0 0 0 4999 15185.216796875 0.15169802855005296 11 -0.2898712158203125 8 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))WC(Carbamidomethyl (C))AAALL_ REV__ENSG00000204021|ENST00000404190|LIPK 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5975 0 0 898.472703444021 0 898.472703444021 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5975 + + 2 + NaN NaN 91032.7 NaN 2967 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5008 32.8 NaN 24476 35 0 4824.1 0.261 + 1795 CNCSEHIPSTI 11 14 602.2603145220147 1202.5060761108293 2 602.2596435546875 MULTI HCD FTMS 0 0 0 4999 8139.20703125 0.31401543268926096 -2 0.036418914794921875 9 Unmodified _CNCSEHIPSTI_ ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR 2.0860074813731053 0.4097721463192591 2 T{I|L} 2 9 20.969 0 0 1.7438 0 0 970.3621693341812 0 970.3621693341812 0 20.969100130080562 0 0 0 0 0 0 0 + T{I|L} 1.7438 + + 1 NaN NaN 78621.6 NaN 2968 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5009 32.803 NaN 10678 35 0 2830 0.261 + -1 CSHCMRYHV 9 11 633.24951171875 NaN 0 633.24951171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))SHC(Carbamidomethyl (C))M(Oxidation (M))RYHV_ REV__CD3D|p.Q94H|1|0.22|ENSG00000167286|chr11:118339899-118339899|C/G|missense_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103516.4 NaN 2969 2038 4999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5011 32.809 NaN 377080 35 0 36435 0.327 + 21853 QAVQEATRL 9 60 508.2800793010747 1014.5456056689494 2 508.2800598144531 MULTI HCD FTMS 0 0 0 5010 186696.6875 0.17299620944402785 8 -0.19660568237304688 1 Unmodified _QAVQEATRL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 76.82478488871298 0.006879825292024087 2 [QA]VQEATR{I|L} 9 0 + 65.752 0 0 6.4809 6.4809 88.743 0 0 0 40.084594804115724 14.00946145243423 14.00946145243423 9.208187539523742 0 1.363364334130467 0 0.7134679910804405 0.6109243748081782 + + [QA]VQEATR{I|L};[QA]V[AG]EATR{I|L};[QA]ENKK{[QG]|[NA]}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}ANKK{[QG]|[NA]}{I|L} 6.4809;5.5733;1.2334;0.34394 +;-;-;- + 216 + NaN NaN 152190.2 NaN 2970 2039 5010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5012 32.813 NaN 601290 35 0 45936 0.261 + 21693 QAARDYTL 8 71 469.24046967751883 936.4663864218377 2 469.2402648925781 MULTI HCD FTMS 0 0 0 5010 367095.09375 0.8163334898076825 -1 0.03658294677734375 2 Unmodified _QAARDYTL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 92.65332237495696 0.0283202655748058 2 QAARDYT{I|L} 8 0 + 53.885 0 0 5.7541 5.7541 83.895 0 0 0 0.7761873636262706 0.7761873636262706 0.7761873636262706 0.7761873636262706 0 1.5629529932484498 1 0.6139829889124311 0 + + QAARDYT{I|L};[QA]ARDYT{I|L};QA[VP]DHGT{I|L};{[SA]|[TG]}E[HV]A[NP]{I|L};[{I|L}T]E[HN][NP]{I|L};[YT]{I|L}D[VG][RN];[YT]{I|L}EAA[RN];[{I|L}T]YD[VG][RN];[{I|L}T]YEAA[RN] 5.7541;5.6712;4.6724;2.6875;1.9888;1.8791;1.6911;0.52185;0.33381 +;+;-;-;-;-;-;-;- + 536 + NaN NaN 175864.5 NaN 2971 2039 5010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5013 32.816 NaN 178730 35 0 34831 0.261 + -1 MSKCQSDR 8 45 514.2185867775437 NaN 0 514.2294311523438 PEAK HCD FTMS 0 0 0 5010 2783.821044921875 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))SKC(Carbamidomethyl (C))QSDR_ REV__ENSG00000196632|ENST00000354646|WNK3;REV__nc|ENSG00000196632|Q9BYP7-2|WNK3;REV__nc|ENSG00000196632|Q9BYP7-3|WNK3;REV__nc|ENSG00000196632|Q9BYP7-4|WNK3 4.75600775471527 0.38822285293237185 2 S{M(Oxidation (M))|F}VA 4 -1 14.157 0 0 1.3792 0 0 448.10293175645603 171.08851038150627 619.1914421379623 0 0 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}VA 1.3792 - 19 + NaN NaN 110180.2 NaN 2972 2039 5010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5014 32.82 NaN 70508 35 0 6178.9 0.261 + 32570 WITADPNFR 9 31 560.2811337257865 1118.547714518373 2 560.28173828125 MULTI HCD FTMS 0 0 0 5010 17343.267578125 0.3491660832652152 4 -0.10326766967773438 4 Unmodified _WITADPNFR_ REV__ENSG00000161681|ENST00000293441|SHANK1;REV__nc|ENSG00000161681|Q9Y566-3|SHANK1 6.2057823575117 0.30397260197431997 2 D 1 -1 11.594 0 0 1.0365 0 0 532.2758161802855 468.22104822330317 1000.4968644035887 0 0 0 0 0 0.7614393726401688 0 0 0 D 1.0365 + + 8 + NaN NaN 93202.1 NaN 2973 2039 5010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5015 32.823 NaN 29965 35 0 7886.8 0.261 + -1 FLKCLHDR 8 22 544.7886352539062 NaN 0 544.7886352539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _FLKC(Carbamidomethyl (C))LHDR_ REV__ENSG00000136709|ENST00000322313|WDR33 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82104.1 NaN 2974 2039 5010 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5017 32.828 NaN 584550 35 0 121490 0.327 + 3896 EPQGPLEAR 9 52 498.7591317149499 995.5037104966998 2 498.75909423828125 MULTI HCD FTMS 0 0 0 5016 274110.125 0.5067943712959017 -3 0.06993865966796875 1 Unmodified _EPQGPLEAR_ REV__ENSG00000124782|ENST00000379938|RREB1;REV__nc|ENSG00000124782|Q92766-3|RREB1;REV__nc|ENSG00000124782|Q92766-5|RREB1;REV__nc|ENSG00000124782|Q92766|RREB1 39.94969957227396 0.06557568441294001 2 [EP]QP{[DA]|[EG]}A[R{I|L}] 9 -1 + 33.222 0 0 3.3372 3.3372 81.567 0 0 0 5.6424927368726046 2.9216561218376604 2.9216561218376604 2.9216561218376604 0 0.3807196863200844 0 0.8494850021680094 0.3807196863200844 [EP]QP{[DA]|[EG]}A[R{I|L}];{[DA]|[EG]}PAR{I|L}Q[EP];{[DA]|[EG]}PAR{I|L}E[QP];[EP][AG]P{[DA]|[EG]}A[R{I|L}];{[DA]|[EG]}PAR{I|L}[AG][EP] 3.3372;3.0437;2.5645;2.4123;2.1188 -;-;-;-;- 180 + NaN NaN 166637.3 NaN 2975 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5018 32.833 NaN 124400 35 0 27671 0.261 -1 SSGPVDPMM 9 31 476.6911297716007 951.3677066100014 2 476.6909484863281 MULTI HCD FTMS 0 0 0 5016 44702.796875 0.24848851689743004 -26 0.4709014892578125 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.5485 0 0 427.20731186488507 406.11064495504763 833.3179568199328 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 3 + NaN NaN 104253.3 NaN 2976 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5019 32.836 NaN 56547 35 0 15860 0.261 + -1 PMACENIDQC 10 27 627.232938424558 1252.451323915916 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5016 38881.23046875 0.5704470609433494 -13 0.25278472900390625 3 2 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))AC(Carbamidomethyl (C))ENIDQC(Carbamidomethyl (C))_ REV__ENSG00000168056|ENST00000301873|LTBP3;REV__LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 1.4819007175156935 0.4674597685733628 2 S 1 -1 6.9897 0 0 0.55808 0 0 720.2090276286098 442.1867769830688 1162.3958046116786 0 0 0 0 0 0 0 0 0 S 0.55808 - 2 + NaN NaN 93814.3 NaN 2977 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5020 32.84 NaN 61764 35 0 7833.5 0.263 + 2597 DTTVPHQLA 9 25 491.2531858545759 980.4918187759519 2 491.75079345703125 MULTI HCD FTMS 0 0 0 5016 25831.21875 0.3123969607964205 -9 0.17626190185546875 4 Unmodified _DTTVPHQLA_ REV__ENSG00000159921|ENST00000642385|GNE;REV__nc|ENSG00000159921|Q9Y223-2|GNE;REV__nc|ENSG00000159921|Q9Y223-3|GNE;REV__nc|ENSG00000159921|Q9Y223-4|GNE 4.3292370932331545 0.3181982124262546 2 QAV 3 -1 16.198 0 0 1.652 0 0 130.10050005641273 549.2062471979124 679.306747254325 0 0 0 0 0 0 0 0 0 QAV 1.652 - 11 + NaN NaN 85670.1 NaN 2978 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5021 32.843 NaN 68354 35 0 19498 0.261 -1 SIIQMCGVML 10 20 576.2842978337566 1150.554042734313 2 576.2828369140625 MULTI HCD FTMS 0 0 0 5016 15816.1435546875 0.2984535478342593 5 -0.13330459594726562 5 Carbamidomethyl (C) _SIIQMC(Carbamidomethyl (C))GVML_ ENSG00000197386|ENST00000355072|HTT 3.5964929083625545 0.45626689593999237 2 E{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.74603 0 0 165.13948826086818 706.2792452447874 871.4187335056556 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 0.74603 - 3 + NaN NaN 104186.5 NaN 2979 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5022 32.846 NaN 55036 35 0 7383.2 0.261 -1 LPDDPAKTTM 10 29 552.765959990644 1103.5173670480879 2 553.267333984375 MULTI HCD FTMS 0 0 0 5016 13064.4365234375 0.19450636727827061 -10 0.19952774047851562 6 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 4.5288652416199255 0.4513317009562028 2 {I|L}P 2 -1 20.969 0 0 1.9002 0 0 0 890.3565157525999 890.3565157525999 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 1.9002 + + 1 + NaN NaN 93386.1 NaN 2980 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5023 32.85 NaN 22389 35 0 4376.2 0.261 + 35884 YYRYQLNL 8 18 566.7926406169778 1131.5707283007555 2 566.788330078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YYRYQLNL_ ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 2.577480529830294 0.5381683276125971 2 {I|L} 1 7 5.4846 0 0 0.48468 0 0 405.81512634938673 609.6312960260374 1015.4464223754242 0 0 0 0 0 0 0 0 0 + {I|L} 0.48468 + + 1 + NaN NaN 85861 NaN 2981 2040 5016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5025 32.855 NaN 135340 35 0 21226 0.327 + -1 LPICGVCII 9 37 522.7822497487914 1043.5499465643827 2 522.7952880859375 MULTI HCD FTMS 0 0 0 5024 33596.38671875 0.32196483611329396 -5 0.11961746215820312 1 2 Carbamidomethyl (C) _LPIC(Carbamidomethyl (C))GVC(Carbamidomethyl (C))II_ REV__ENSG00000172209|ENST00000304402|GPR22 9.347437153973935 0.2795965555214564 2 {I|L}P 2 -1 25.969 0 0 2.4885 0 0 0 830.3896361787856 830.3896361787856 18.979400086720375 0 0 0 0 0.5 0 0 0 {I|L}P 2.4885 + + 12 + NaN NaN 109088.5 NaN 2982 2041 5024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5026 32.86 NaN 24175 35 0 5466.8 0.261 -1 RFDHVITNM 9 19 574.7794577633717 1147.5443625935434 2 574.7789916992188 MULTI HCD FTMS 0 0 0 5024 11708.109375 0.4517569307292203 -6 0.12961196899414062 2 Oxidation (M) _RFDHVITNM(Oxidation (M))_ ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB 2.9952420565917617 0.3283108881486655 2 {I|L}P 2 -1 12.474 0 0 1.087 0 0 380.1351161555171 554.2647188775999 934.3998350331169 0 0 0 0 0 0.5 0 0 0 {I|L}P 1.087 - 3 + NaN NaN 93620.6 NaN 2983 2041 5024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5027 32.863 NaN 63872 35 0 9050.6 0.261 -1 LPDDPAKTTM 10 29 552.765959990644 1103.5173670480879 2 552.7649536132812 MULTI HCD FTMS 0 0 0 5024 21392.73828125 0.21801633018265304 -11 0.22615432739257812 3 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 9.5439744041441 0.42184090036563754 2 {I|L}PDD 4 -1 41.186 0 0 3.7322 0 0 0 660.302765568554 660.302765568554 34.195925227640984 0 0 0 0 0.9247425010840047 0 0 0 {I|L}PDD 3.7322 + + 8 + NaN NaN 91789.9 NaN 2984 2041 5024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5028 32.866 NaN 51252 35 0 6020.3 0.261 + 27543 TAAGQGILSR 10 31 487.2750659128709 972.5355788925418 2 487.2751770019531 MULTI HCD FTMS 0 0 0 5024 24538.12109375 0.5708751100535309 -3 0.08319854736328125 4 Unmodified _TAAGQGILSR_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST 14.957161354070239 0.3712077760547347 2 [TA]A{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 24.238 0 0 2.4922 2.4922 85.556 0 0 0 10.33932200095428 6.16582797736562 6.16582797736562 10.33932200095428 0 0.7302046884880937 0 0 0 + + [TA]A{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[TA]QQ{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 2.4922;1.4291 +;- + 27 + NaN NaN 101260.3 NaN 2985 2041 5024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5029 32.87 NaN 49336 35 0 6111.1 0.261 + 5629 FMEELREQK 9 32 403.86937236340316 1208.5862876904096 3 404.203369140625 MULTI HCD FTMS 0 0 0 5024 2503.251953125 0.17763852808662822 -3 0.08319854736328125 5 Unmodified _FMEELREQK_ REV__ENSG00000167721|ENST00000301364|TSR1 2.498486711656943 0.33207666356665205 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87850.2 NaN 2986 2041 5024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5031 32.875 NaN 324590 35 0 105490 0.327 + 18822 NADPQAVTM 9 36 481.71613286382154 961.4177127944431 2 481.7159729003906 MULTI HCD FTMS 0 0 0 5030 166694.609375 0.14401500100379627 37 -0.9071578979492188 1 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 51.41523569358685 0.02959097413485123 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 69.429 0 0 7.2215 7.2215 95.737 0 0 0 10.400217704352457 69.42857185869514 10.400217704352457 69.42857185869514 0 2.3494850021680094 0 0 0.7059771852360797 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 7.2215 + + 80 NaN NaN 128242.6 NaN 2987 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5032 32.88 NaN 137760 35 0 23725 0.261 + 15674 LPEKTQESL 9 39 522.7822497487914 1043.5499465643827 2 522.7821044921875 MULTI HCD FTMS 0 0 0 5030 51814.8046875 0.49655771732567944 -4 0.103240966796875 2 Unmodified _LPEKTQESL_ ENSG00000076554|ENST00000518937|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327|TPD52 10.150570793230772 0.27265765907388223 2 {I|L}PEYV 5 6 30.433 0 0 2.9163 0 0 0 439.21943079166255 439.21943079166255 19.195925227640984 0 0 0 0 0 0 0 0 {I|L}PEYV 2.9163 - 27 + NaN NaN 104054.4 NaN 2988 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5033 32.883 NaN 75490 35 0 12932 0.261 + 19001 NATAWFFE 8 36 493.2241292605678 984.4337055879356 2 493.22393798828125 MULTI HCD FTMS 0 0 0 5030 35873.71484375 1 0 0 3 Unmodified _NATAWFFE_ REV__ENSG00000109927|ENST00000392793|TECTA 23.1484247019978 0.4234759064137959 2 {[QG]|[NA]}T 3 -1 40.176 0 0 4.0811 0 0 0 695.2834730042043 695.2834730042043 31.223637474483468 0 0 0 0 1 1.2218487496163564 0.3252574989159953 0.4247425010840047 {[QG]|[NA]}T 4.0811 + + 24 NaN NaN 101008.3 NaN 2989 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5034 32.886 NaN 214270 35 0 22212 0.261 + 3798 EPEEESERHIL 11 36 456.5526764482268 1366.6361999448804 3 456.5528564453125 MULTI HCD FTMS 0 0 0 5030 54926.3984375 0.16681387629095715 -6 0.13965988159179688 4 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 10.52747425323666 0.3653561834368464 2 EEE[HA] 5 7 33.966 0 0 2.4854 0 0 753.4120683148368 0 753.4120683148368 0 15.778324880759481 0 0 0 0.3252574989159953 0 0.8494850021680094 0 EEE[HA] 2.4854 - 36 NaN NaN 122624.6 NaN 2990 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5035 32.89 NaN 63719 35 0 13633 0.261 -1 KPMMKEFRF 9 31 410.54377804236606 1228.6095047272981 3 410.5440673828125 MULTI HCD FTMS 0 0 0 5030 17866.142578125 0.5193072327015105 -4 0.103240966796875 5 Oxidation (M) _KPM(Oxidation (M))MKEFRF_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2;NOMO1|p.P937S|1|0.52|ENSG00000103512|chr16:14880066-14880066|C/T|missense_variant 1.9063754702782614 0.3365653076853981 2 E 1 -1 6.9897 0 0 0.56891 0 0 631.3266200610857 465.2251375787719 1096.5517576398577 0 0 0 0 0 0 0 0 0 E 0.56891 + + 1 + NaN NaN 94190.6 NaN 2991 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5036 32.893 NaN 59670 35 0 10992 0.261 + 31394 VYAHIYHQHF 10 32 438.8841765299039 1313.6307001899117 3 438.88409423828125 MULTI HCD FTMS 0 0 0 5030 13302.8759765625 0.1646476413600142 16 -0.38651275634765625 6 Unmodified _VYAHIYHQHF_ ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;nc|ENSG00000173542|Q7L9L4-2|MOB1B 1.7422754331352037 0.46608156381052757 2 VY 2 8 40.969 0 0 3.1188 0 0 0 1048.4732341665715 1048.4732341665715 33.979400086720375 0 0 0 0 0 2 0 0 + VY 3.1188 + + 5 + NaN NaN 89925.7 NaN 2992 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5037 32.896 NaN 55237 35 0 4491.2 0.261 -1 MAFQDLLGHA 10 23 559.7695775022922 1117.5246020713844 2 560.2748413085938 MULTI HCD FTMS 0 0 0 5030 7154.458984375 0.09406164757760925 -71 1.418630599975586 7 Oxidation (M) _M(Oxidation (M))AFQDLLGHA_ ENSG00000149742|ENST00000279178|SLC22A9;nc|ENSG00000149742|Q8IVM8-2|SLC22A9 3.2813086475875832 0.45793521633868084 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108149.9 NaN 2993 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5038 32.9 NaN 61078 35 0 12294 0.262 + 7265 FTAVKENV 8 26 454.2479476619861 906.4813423907722 2 454.2478942871094 MULTI HCD FTMS 0 0 0 5030 14999.2548828125 0.5042706557682761 -2 0.04666900634765625 8 Unmodified _FTAVKENV_ tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1 11.640296217721598 0.50814828952472 2 A{[ET]|[MV]} 3 6 15.458 0 0 1.7052 0 0 587.327202600974 0 587.327202600974 0 8.010299956639813 0 0 0 0.5 0 0 0 A{[ET]|[MV]} 1.7052 - 7 NaN NaN 96864.8 NaN 2994 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5039 32.903 NaN 51286 35 0 5057.5 0.261 + 22598 QTKAAQALA 9 43 451.25784765902745 NaN 0 451.2574157714844 PEAK HCD FTMS 0 0 0 5030 7250.93994140625 0.4792750420053615 3 -0.08663558959960938 9 Unmodified _QTKAAQALA_ ENSG00000140553|ENST00000418476|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A 1.844237919475145 0.28630992268396543 2 E 1 9 3.9794 0 0 0.44191 0 0 563.3737142616112 205.06179224185783 768.435506503469 0 0 0 0 0 0 0 0 0 E 0.44191 - 4 + NaN NaN 89678.8 NaN 2995 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5040 32.906 NaN 87998 35 0 9495.2 0.261 + 33925 YLQQQAKL 8 50 496.28212444642435 990.5496959596487 2 496.28179931640625 MULTI HCD FTMS 0 0 0 5030 13293.4736328125 0.3793676483588318 -3 0.06665802001953125 10 Unmodified _YLQQQAKL_ ENSG00000171956|ENST00000396057|FOXB1 5.760428011301431 0.5334459684533844 2 {I|L}Y{I|L} 3 6 23.188 0 0 2.3409 0 0 583.3078480451187 0 583.3078480451187 0 21.40485100867506 0 0 0 0 0 0 0 {I|L}Y{I|L} 2.3409 - 9 NaN NaN 93968 NaN 2996 2042 5030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5042 32.912 NaN 89544 35 0 11619 0.327 -1 DHMVDGQPL 9 32 514.2293881976826 1026.4442234621652 2 514.2470703125 MULTI HCD FTMS 0 0 0 5041 15711.12109375 0.15876389345464617 7 -0.17333221435546875 1 Oxidation (M) _DHM(Oxidation (M))VDGQPL_ ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 6.723162845929126 0.3000504726104499 2 S{M(Oxidation (M))|F}VAR 5 -1 29.464 0 0 2.8705 0 0 448.1268177130343 0 448.1268177130343 0 24.85985638199878 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}VAR 2.8705 - 16 + NaN NaN 103302.4 NaN 2997 2043 5041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5043 32.916 NaN 66527 35 0 10585 0.261 + 19287 NLSTDARQVSA 11 29 581.2968067178246 1160.579060502449 2 581.2960815429688 MULTI HCD FTMS 0 0 0 5041 33717.296875 0.5526631193197443 -5 0.13985061645507812 2 Unmodified _NLSTDARQVSA_ REV__ENSG00000107372|ENST00000376962|ZFAND5 7.101721422024254 0.3877749288398915 2 [NS]{I|L}WAVS 7 -1 49.469 0 0 4.2624 0 0 0 400.19318567447505 400.19318567447505 40.51615737469504 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 [NS]{I|L}WAVS 4.2624 - 41 + NaN NaN 109876 NaN 2998 2043 5041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5044 32.92 NaN 34946 35 0 5380.8 0.263 + 30522 VMPVQTKD 8 24 459.2417816755111 916.4690104178222 2 459.2420654296875 MULTI HCD FTMS 0 0 0 5041 9498.9326171875 0.7091991674431087 1 -0.016712188720703125 3 Unmodified _VMPVQTKD_ REV__APEH|p.H511Ifs*24|1|0.2|ENSG00000164062|chr3:49681892-49681892|C/-|frameshift_variant;REV__ENSG00000164062|ENST00000296456|APEH 0.7936320650641473 0.540814922690045 2 A 1 -1 1.1092 0 0 0.12103 0 0 458.671050068016 383.73594080142817 842.4069908694441 0 0 0 0 0 0 0 0 0 A 0.12103 - 2 + NaN NaN 95027 NaN 2999 2043 5041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5045 32.923 NaN 49922 35 0 6809.9 0.261 + 4009 ERNNRTRL 8 34 529.7962620381799 NaN 0 529.7964477539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _ERNNRTRL_ ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 3.944395688203298 0.38822285293237185 2 TT 2 7 15.969 0 0 1.51 0 0 568.2888608910097 284.1728609674438 852.4617218584535 0 0 0 0 0 0.5 0 0 0 TT 1.51 - 4 + NaN NaN 88172.2 NaN 3000 2043 5041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5047 32.929 NaN 252970 35 0 50495 0.327 + 30237 VIQENEHAL 9 36 526.7721738093154 1051.5297946854307 2 526.7721557617188 MULTI HCD FTMS 0 0 0 5046 170829.90625 0.8396915515530138 2 -0.053295135498046875 1 Unmodified _VIQENEHAL_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant 55.50274090549119 0.023872834264864425 2 V{I|L}QENE 6 3 82.428 0 0 7.8388 0 0 0 336.16770349674067 336.16770349674067 75.438134727926 0 0 0 0 1.3494850021680094 2 0.8494850021680094 0.3807196863200844 + V{I|L}QENE 7.8388 + + 41 + NaN NaN 121698.6 NaN 3001 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5048 32.933 NaN 147260 35 0 22474 0.261 + 28585 TPVGKDPGL 9 43 442.24817529101637 882.4817976488328 2 442.24798583984375 MULTI HCD FTMS 0 0 0 5046 97530.484375 0.6253942308983245 2 -0.053295135498046875 2 Unmodified _TPVGKDPGL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 41.95555342248728 0.056367691549927025 2 TPVGKD 6 3 67.115 0 0 7.6053 0 0 0 282.14548669986567 282.14548669986567 62.51139416000356 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 + TPVGKD 7.6053 + + 54 + NaN NaN 110279.5 NaN 3002 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5049 32.936 NaN 90647 35 0 12228 0.261 -1 QPMQPTPSM 9 22 516.7281549411646 1031.441756949129 2 516.7282104492188 MULTI HCD FTMS 0 0 0 5046 25550.193359375 0.6429212651519024 1 -0.033313751220703125 3 Oxidation (M) _QPMQPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 14.838274106304384 0.23215694253501695 2 [WY][KS]QT 6 -1 9.8945 0 0 0.95929 0 0 0 235.05837427310783 235.05837427310783 9.894549897933873 0 0 0 0 0.5 0 0 0 [WY][KS]QT 0.95929 - 8 + NaN NaN 99067.9 NaN 3003 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5050 32.94 NaN 109530 35 0 8818.9 0.261 + 23930 RTQSEFTL 8 44 491.2531858545759 980.4918187759519 2 491.2527160644531 MULTI HCD FTMS 0 0 0 5046 45334.12890625 0.2921507005955621 -4 0.0999908447265625 4 Unmodified _RTQSEFTL_ REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF;REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 20.453626601364224 0.4433031943603284 2 VPT{I|L} 4 -1 30.662 0 0 3.1272 0 0 552.2267323224625 0 552.2267323224625 0 20.419562702124452 0 0 0 0.5 0 0 0 VPT{I|L} 3.1272 - 17 NaN NaN 102769.2 NaN 3004 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5051 32.943 NaN 59000 35 0 11230 0.261 + 26446 STMSTNGIPR 10 25 532.2636277528038 1062.5127025724075 2 532.2638549804688 MULTI HCD FTMS 0 0 0 5046 29706.197265625 0.36521352744701135 -4 0.0999908447265625 5 Unmodified _STMSTNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 19.361941925380144 0.3300069447713393 2 {[MG]|[TS]}M{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 10 0 + 18.173 0 0 1.7104 1.7104 87.034 0 0 0 18.172874778693355 7.00196235524295 7.00196235524295 18.172874778693355 0 0.4247425010840047 0 0 0 + + {[MG]|[TS]}M{[MG]|[TS]}N{[VA]|[{I|L}G]}[RP] 1.7104 + + 13 + NaN NaN 91340.2 NaN 3005 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5052 32.946 NaN 25029 35 0 3202.5 0.261 + -1 FWEGYQCTI 9 21 602.2603145220147 1202.5060761108293 2 602.2603149414062 MULTI HCD FTMS 0 0 0 5046 18479.451171875 0.7129481819686817 4 -0.0999755859375 6 Carbamidomethyl (C) _FWEGYQC(Carbamidomethyl (C))TI_ REV__ENSG00000143502|ENST00000366878|SUSD4;REV__nc|ENSG00000143502|Q5VX71-2|SUSD4 1.4819007175156935 0.3397831423917744 2 T{I|L} 2 -1 20.969 0 0 1.7438 0 0 970.3641834943375 0 970.3641834943375 0 20.969100130080562 0 0 0 0 0 0 0 T{I|L} 1.7438 + + 1 NaN NaN 81099.7 NaN 3006 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5053 32.95 NaN 47361 35 0 6030.8 0.262 + 22575 QSQDIFAGR 9 34 511.25672565485155 1020.4988983765031 2 511.25665283203125 MULTI HCD FTMS 0 0 0 5046 17210.84765625 0.42120838298921087 3 -0.07662582397460938 7 Unmodified _QSQDIFAGR_ REV__ENSG00000167325|ENST00000300738|RRM1 6.723162845929126 0.3000504726104499 2 {I|L}{M(Oxidation (M))|F}QR 4 -1 27.423 0 0 2.6872 0 0 458.17713431575936 0 458.17713431575936 0 17.95880017344075 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}QR 2.6872 - 16 + NaN NaN 93099 NaN 3007 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5054 32.953 NaN 20648 35 0 5176.4 0.261 -1 MLICSLCKH 9 19 589.2796606593116 1176.5447683854231 2 589.2799072265625 MULTI HCD FTMS 0 0 0 5046 6339.32177734375 0.4396861403879283 -8 0.19298171997070312 8 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LIC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))KH_ ENSG00000212126|ENST00000506868|TAS2R50 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88301.1 NaN 3008 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5055 32.956 NaN 45696 35 0 8934.2 0.261 -1 0 30 528.9265980229065 1583.7579646689196 3 529.250732421875 MULTI HCD FTMS 0 0 0 5046 5449.828125 0.023547982755959724 29 -0.7272567749023438 9 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.92212 0 0 1418.712140549582 0 1418.712140549582 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.92212 - 3 + NaN NaN 85343.1 NaN 3009 2044 5046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5057 32.962 NaN 178380 35 0 15992 0.327 + 21694 QAARDYTL 8 47 469.24046967751883 936.4663864218377 2 469.2403564453125 MULTI HCD FTMS 0 0 0 5056 119608.7578125 0.26598185685133535 5 -0.1233062744140625 1 Unmodified _QAARDYTL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 15.847184025352803 0.47719562709667024 2 T[YE]YT{I|L} 6 5 16.655 0 0 1.7785 0 0 148.12082114117135 0 148.12082114117135 0 3.1825031801593457 0 0 0 0.3494850021680094 0 0.3494850021680094 0 T[YE]YT{I|L} 1.7785 - 31 + NaN NaN 113009.3 NaN 3010 2045 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5058 32.966 NaN 134620 35 0 16886 0.261 + 22614 QVAQGDELR 9 43 508.26391499941957 NaN 0 508.2799987792969 PEAK HCD FTMS 0 0 0 5056 1794.6229248046875 1 0 0 2 Unmodified _QVAQGDELR_ REV__ENSG00000166478|ENST00000396602|ZNF143;REV__nc|ENSG00000166478|P52747-2|ZNF143;REV__nc|ENSG00000166478|P52747-3|ZNF143 3.944395688203298 0.27613285122220627 2 VQEAT 5 -1 20.433 0 0 2.0141 0 0 199.06579348312533 284.17258630924067 483.238379792366 0 0 0 0 0 0 0 0 0 VQEAT 2.0141 - 41 + NaN NaN 100849.3 NaN 3011 2045 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5059 32.97 NaN 47852 35 0 6495.4 0.261 + 23287 RHMIDWRYQL 10 27 473.24364975068454 1416.7091198522537 3 473.2440490722656 MULTI HCD FTMS 0 0 0 5056 17378.4453125 0.6975113673929323 -4 0.10667800903320312 3 Unmodified _RHMIDWRYQL_ REV__ENSG00000133134|ENST00000372677|BEX2;REV__nc|ENSG00000133134|Q9BXY8-2|BEX2 0.5631705045366581 0.4723227536457635 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89680.6 NaN 3012 2045 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5060 32.973 NaN 42153 35 0 6013.7 0.261 -1 CLSMTEHALG 10 28 559.7522642542643 1117.4899755753286 2 559.751708984375 MULTI HCD FTMS 0 0 0 5056 15421.7587890625 0.7040553393806817 -3 0.08663558959960938 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSMTEHALG_ ENSG00000020577|ENST00000554335|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENST00000556069.5_1_14:55251199-55255659:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A 3.2813086475875832 0.45793521633868084 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89741.2 NaN 3013 2045 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5061 32.976 NaN 39433 35 0 6131.3 0.261 -1 WVCQKCGFV 9 25 563.76186424003 1125.50917554686 2 563.2796630859375 MULTI HCD FTMS 0 0 0 5056 4844.3388671875 0.12989880227961445 10 -0.23993301391601562 5 Carbamidomethyl (C) _WVCQKC(Carbamidomethyl (C))GFV_ ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79166.5 NaN 3014 2045 5056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5063 32.982 NaN 808840 35 0 172150 0.326 + 3908 EPQPGEARL 9 43 498.7591317149499 995.5037104966998 2 498.75909423828125 MULTI HCD FTMS 0 0 0 5062 374209.5625 0.6918653587134074 3 -0.08001327514648438 1 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 36.506200033944 0.08138327636155518 2 {[DA]|[EG]}PAGAHAR 9 6 36.085 0 0 3.6248 0 0 0 146.0817125515604 146.0817125515604 23.12645944157908 0 0 0 0 0.5 0 0.805462187404089 0 {[DA]|[EG]}PAGAHAR 3.6248 - 263 NaN NaN 213672.5 NaN 3015 2046 5062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5064 32.986 NaN 238320 35 0 54129 0.261 -1 SSGPVDPMM 9 38 476.6911297716007 951.3677066100014 2 476.6911315917969 MULTI HCD FTMS 0 0 0 5062 96278.09375 0.5351790580921952 -20 0.4260826110839844 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.2061150840492 0 427.2061150840492 0 15.445312593723983 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 8 NaN NaN 116648.9 NaN 3016 2046 5062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5065 32.99 NaN 68206 35 0 20359 0.261 + -1 WWPCMWCPE 9 24 627.232938424558 1252.451323915916 2 627.2332763671875 MULTI HCD FTMS 0 0 0 5062 42282.47265625 0.6203484808836295 -7 0.17327499389648438 3 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 2.302733041254933 0.33356062215410776 2 PE 2 -1 17.959 0 0 1.4339 0 0 1008.3620472638687 0 1008.3620472638687 0 9.3753063169585 0 0 0 0 0 0 0 PE 1.4339 + + 4 NaN NaN 92461.7 NaN 3017 2046 5062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5066 32.993 NaN 38840 35 0 4936.1 0.261 + 24978 RYVDKVSNL 9 25 547.3036254739592 1092.5926980147183 2 547.3032836914062 MULTI HCD FTMS 0 0 0 5062 25916.693359375 0.9748005692762856 -2 0.053295135498046875 4 Unmodified _RYVDKVSNL_ ENSG00000239382|ENST00000378875|ALKBH6;ENST00000392183.7_1_19:36501753-36505114:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;nc|ENSG00000239382|Q3KRA9-2|ALKBH6 4.897010918128616 0.31389406404703984 2 KV[WK] 4 7 19.253 0 0 1.7621 0 0 533.260545799025 0 533.260545799025 0 14.648415687162952 0 0 0 0.3054621874040891 0 0 0 KV[WK] 1.7621 - 5 NaN NaN 90137.3 NaN 3018 2046 5062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5067 32.996 NaN 47827 35 0 5066.4 0.261 + 8272 GTYVSSVPR 9 33 483.25635319996434 964.4981534667287 2 484.2457275390625 MULTI HCD FTMS 0 0 0 5062 10904.357421875 1 0 0 5 Unmodified _GTYVSSVPR_ ENSG00000204252|ENST00000229829|HLA-DOA;ENST00000485901.1_1_6:32974617-32975137:-|nuORF 8.155526934196011 0.2891920862272901 2 P[HS]VS 5 7 18.188 0 0 1.8857 0 0 0 454.2425936334594 454.2425936334594 12.730012720637374 0 0 0 0 0.3494850021680094 0 0 0 P[HS]VS 1.8857 - 19 + NaN NaN 94667.5 NaN 3019 2046 5062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5068 33 NaN 18358 35 0 2805.4 0.261 -1 SLFMLFLVM 9 19 566.7926406169778 1131.5707283007555 2 566.788330078125 MULTI HCD FTMS 0 0 0 5062 7645.6533203125 0.1792564385699945 -11 0.2562713623046875 6 2 Oxidation (M) _SLFM(Oxidation (M))LFLVM(Oxidation (M))_ ENSG00000169214|ENST00000641470|OR6F1 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85687.2 NaN 3020 2046 5062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5070 33.005 NaN 179330 35 0 27470 0.327 -1 LPDDPAKTTM 10 47 552.765959990644 1103.5173670480879 2 552.7659912109375 MULTI HCD FTMS 0 0 0 5069 79018.7578125 0.8052909995618607 -5 0.12994766235351562 1 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 35.61225514009592 0.18348312004207498 2 {I|L}PDDH 5 -1 51.81 0 0 4.695 0 0 0 523.2358492486936 523.2358492486936 44.363044005075736 0 0 0 0 1.2614393726401687 0 0.4247425010840047 0 {I|L}PDDH 4.695 - 99 + NaN NaN 103049.4 NaN 3021 2047 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5071 33.01 NaN 44399 35 0 5327.1 0.261 + 27544 TAAGQGILSR 10 32 487.2750659128709 972.5355788925418 2 487.2749328613281 MULTI HCD FTMS 0 0 0 5069 17256.998046875 0.4014810515264997 3 -0.07999420166015625 2 Unmodified _TAAGQGILSR_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST 8.444304893310646 0.4306066564229251 2 [TA]A{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 14.41 0 0 1.4817 1.4817 81.243 0 0 0 5.457574905606746 5.457574905606746 5.457574905606746 3.5218251811136234 0 0.3494850021680094 0 0 0 + + [TA]A{[QG]|[NA]}{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[TA]QQ{[VA]|[{I|L}G]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 1.4817;1.1196 +;- + 13 + NaN NaN 97297.2 NaN 3022 2047 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5072 33.013 NaN 42518 35 0 7894.4 0.261 -1 RFDHVITNM 9 27 574.7794577633717 1147.5443625935434 2 574.7788696289062 MULTI HCD FTMS 0 0 0 5069 25916.833984375 1 0 0 3 Oxidation (M) _RFDHVITNM(Oxidation (M))_ ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB 14.405379775768559 0.2358970535022398 2 {I|L}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4 -1 27.435 0 0 2.3908 0 0 654.3226961890497 0 654.3226961890497 0 20.445312593723983 0 0 0 1 0 0 0.4247425010840047 {I|L}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 2.3908 + + 17 + NaN NaN 82451.7 NaN 3023 2047 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5073 33.016 NaN 142450 35 0 10370 0.263 + 3308 EEHASYHLRAH 11 55 450.5489555383666 1348.6250372153 3 450.54888916015625 MULTI HCD FTMS 0 0 0 5069 11805.17578125 0.8020003002732646 -5 0.12994766235351562 4 Unmodified _EEHASYHLRAH_ ENSG00000179242|ENST00000614565|CDH4;nc|ENSG00000179242|P55283-2|CDH4 2.4347853303010236 0.4082425251555256 2 [HA]E{M(Oxidation (M))|F} 4 9 26.995 0 0 2.0017 0 0 0 861.4223394666928 861.4223394666928 18.258884703078735 0 0 0 0 1 0 0.3807196863200844 0 [HA]E{M(Oxidation (M))|F} 2.0017 - 27 + NaN NaN 104250.9 NaN 3024 2047 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5074 33.02 NaN 14347 35 0 5804.5 0.261 + 23534 RNQDMSRQY 9 9 599.2729558263748 1196.5313587195494 2 599.2731323242188 MULTI HCD FTMS 0 0 0 5069 9903.1640625 0.5520908463733576 -1 0.0233306884765625 5 Unmodified _RNQDMSRQY_ ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1 2.9952420565917617 0.3283108881486655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90277.3 NaN 3025 2047 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5075 33.023 NaN 11689 35 0 2049.9 0.261 + -1 MNGRNVQWLH 10 12 635.80859375 NaN 0 635.80859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))NGRNVQWLH_ REV__ENSG00000155229|ENST00000438925|MMS19;REV__nc|ENSG00000155229|Q96T76-5|MMS19;REV__nc|ENSG00000155229|Q96T76-8|MMS19;REV__nc|ENSG00000155229|Q96T76-9|MMS19 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81143.7 NaN 3026 2047 5069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5077 33.028 NaN 954800 35 0 99514 0.327 + 3799 EPEEESERHIL 11 48 456.5526764482268 1366.6361999448804 3 456.5527648925781 MULTI HCD FTMS 0 0 0 5076 329267.5625 1 0 0 1 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 13.534932898082838 0.33915209766063664 2 SEEE[HA] 6 7 36.911 0 0 2.7009 0 0 666.3817535253219 0 666.3817535253219 0 16.46591250700361 0 0 0 0 0 0.8494850021680094 0 SEEE[HA] 2.7009 - 106 NaN NaN 230522.4 NaN 3027 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5078 33.033 NaN 245800 35 0 70675 0.261 + 18823 NADPQAVTM 9 40 481.71613286382154 961.4177127944431 2 481.7158508300781 MULTI HCD FTMS 0 0 0 5076 111861.0234375 0.09664178981574965 43 -1.0336036682128906 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 47.7319792270244 0.034743597693959835 2 {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 9 0 + 67.101 0 0 6.9794 6.9794 95.238 0 0 0 1.5051499783199063 1.5051499783199063 1.5051499783199063 67.10077508221467 0 2.774227503252014 0 0 0.3494850021680094 + + {[QG]|[NA]}D[QP]AVT{M(Oxidation (M))|F} 6.9794 + + 63 NaN NaN 123219.7 NaN 3028 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5079 33.036 NaN 185090 35 0 40297 0.261 + 15675 LPEKTQESL 9 46 522.7822497487914 1043.5499465643827 2 522.7822265625 MULTI HCD FTMS 0 0 0 5076 85818.1484375 0.8224225518217886 2 -0.056644439697265625 3 Unmodified _LPEKTQESL_ ENSG00000076554|ENST00000518937|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;nc|ENSG00000076554|P55327-6|TPD52;nc|ENSG00000076554|P55327-7|TPD52;nc|ENSG00000076554|P55327|TPD52 37.07464296494664 0.07877380486334713 2 {I|L}PEYV 5 6 51.714 0 0 4.9556 0 0 0 439.2210787408813 439.2210787408813 31.141303353600094 0 0 0 0 0.3807196863200844 1.3979400086720375 0.3494850021680094 0 {I|L}PEYV 4.9556 - 41 + NaN NaN 113851 NaN 3029 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5080 33.04 NaN 259620 35 0 29533 0.262 + 4141 ETISSKNIISR 11 52 416.56983471244286 1246.6876747375286 3 416.5697937011719 MULTI HCD FTMS 0 0 0 5076 77365.34375 0.8903022262851027 -3 0.06666183471679688 4 Unmodified _ETISSKNIISR_ ENSG00000179119|ENST00000336349|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1 9.530100786504857 0.37404633115274044 2 {I|L}{I|L}N 3 9 22.945 0 0 1.8405 0 0 279.1554178381694 624.2977999322874 903.4532177704568 0 0 0 0 0 0.3252574989159953 0 0 0.3494850021680094 {I|L}{I|L}N 1.8405 - 40 + NaN NaN 128619.8 NaN 3030 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5081 33.043 NaN 93007 35 0 11669 0.261 + 25506 SFHNIHNTF 9 39 558.7645876760258 1115.5146224188516 2 558.7643432617188 MULTI HCD FTMS 0 0 0 5076 36318.91015625 0.4041955623891115 -4 0.0999755859375 5 Unmodified _SFHNIHNTF_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 37.07464296494664 0.07877380486334713 2 {I|L}HQS{M(Oxidation (M))|F} 5 6 30.165 0 0 2.7041 0 0 485.2010975568375 0 485.2010975568375 0 -0.10808401248290522 -0.10808401248290522 0 0 0.4247425010840047 0 0 0 {I|L}HQS{M(Oxidation (M))|F} 2.7041 - 41 NaN NaN 97103.2 NaN 3031 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5082 33.046 NaN 72549 35 0 13485 0.263 + 12447 KQKASAYYPSS 11 35 410.54377804236606 1228.6095047272981 3 410.5437927246094 MULTI HCD FTMS 0 0 0 5076 32699.2421875 0.9504543522796185 2 -0.056644439697265625 6 Unmodified _KQKASAYYPSS_ ENSG00000183160|ENST00000392806|TMEM119 1.0135738785822086 0.41447547578978133 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 3 10 10.458 0 0 0.85117 0 0 0 880.4500863525512 880.4500863525512 4.771212547196626 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T 0.85117 - 9 NaN NaN 87422.1 NaN 3032 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5083 33.05 NaN 81533 35 0 14826 0.261 + -1 EALFDFSPMLE 11 24 438.8694186612657 1313.586426583997 3 438.88397216796875 MULTI HCD FTMS 0 0 0 5076 15806.6884765625 1 0 0 7 Oxidation (M) _EALFDFSPM(Oxidation (M))LE_ REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 1.214830529360525 0.41359283248740725 2 T{I|L}Y 3 -1 16.198 0 0 1.2331 0 0 99.02475183337636 834.3356621867738 933.3604140201502 0 0 0 0 0 0 0 0 0 T{I|L}Y 1.2331 - 8 + NaN NaN 97649.7 NaN 3033 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5084 33.053 NaN 38289 35 0 8719.7 0.261 + -1 LDCVCVLED 9 18 561.7440284849412 1121.4735040366822 2 561.7435913085938 MULTI HCD FTMS 0 0 0 5076 15772.78515625 0.5747098150490815 -5 0.11668777465820312 8 2 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))VC(Carbamidomethyl (C))VLED_ REV__ENSG00000047936|ENST00000368507|ROS1;REV__nc|ENSG00000047936|P08922|ROS1;REV__ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 K{I|L} 2 -1 16.198 0 0 1.4443 0 0 862.28032118965 0 862.28032118965 0 10.713337517843655 0 0 0 0 0 0 0 K{I|L} 1.4443 - 3 NaN NaN 85344.7 NaN 3034 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5085 33.056 NaN 24079 35 0 4217.3 0.261 + 5471 FIQNAQICEL 10 17 589.7973713887491 1177.580189844298 2 590.299072265625 MULTI HCD FTMS 0 0 0 5076 6323.46826171875 0.44485597589908016 -1 0.023349761962890625 9 Unmodified _FIQNAQICEL_ REV__ENSG00000100330|ENST00000401950|MTMR3;REV__ENST00000415511.1_1_22:30367048-30387510:+|nuORF;REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant;REV__nc|ENSG00000100330|Q13615-2|MTMR3;REV__nc|ENSG00000100330|Q13615-3|MTMR3 2.735195868890462 0.4608258780945842 2 Q{[QN]|[E{I|L}]|[KN]} 3 -1 10.458 0 0 0.88806 0 0 789.3790875809863 0 789.3790875809863 0 10.45757490560675 0 0 0 0 0 0 0 Q{[QN]|[E{I|L}]|[KN]} 0.88806 - 1 NaN NaN 94686.5 NaN 3035 2048 5076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5087 33.062 NaN 191430 35 0 71226 0.326 + 19447 NPSGESQPL 9 31 464.7220642741418 927.4295756150836 2 464.7217712402344 MULTI HCD FTMS 0 0 0 5086 48923.70703125 0.9344370429084823 -1 0.03333282470703125 1 Unmodified _NPSGESQPL_ ENSG00000115414|ENST00000354785|FN1;ENST00000490833.5_1_2:216246727-216248186:-|nuORF;ENST00000492816.6_1_2:216246929-216248186:-|nuORF;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1 9.38312468134398 0.279288223203164 2 P{I|L} 2 7 25.969 0 0 2.8001 0 0 699.282505270624 0 699.282505270624 0 25.969100130080562 0 0 0 0.5 0 0 0 + P{I|L} 2.8001 + + 2 NaN NaN 127504.8 NaN 3036 2049 5086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5088 33.066 NaN 102180 35 0 23042 0.261 + 1962 DAINTEFKNTR 11 27 436.8896103763343 1307.6470017292029 3 436.8894348144531 MULTI HCD FTMS 0 0 0 5086 22533.4609375 0.8601604083512069 -2 0.056682586669921875 2 Unmodified _DAINTEFKNTR_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 3.8459078486920597 0.402053821155582 2 {[DA]|[EG]}{I|L} 3 8 34.265 0 0 2.6203 0 0 0 1005.4755193039169 1005.4755193039169 29.660677999045717 0 0 0 0 0.3807196863200844 2 0 0 + {[DA]|[EG]}{I|L} 2.6203 + + 5 + NaN NaN 91382.8 NaN 3037 2049 5086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5089 33.07 NaN 55909 35 0 8603.4 0.261 + 33839 YLKNNNLL 8 31 496.28212444642435 990.5496959596487 2 496.2822265625 MULTI HCD FTMS 0 0 0 5086 8524.3359375 0.24326653572681484 4 -0.08336639404296875 3 Unmodified _YLKNNNLL_ tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1 2.577480529830294 0.5381683276125971 2 T 1 8 1.9897 0 0 0.20087 0 0 425.2632712543737 461.22870813541255 886.4919793897863 0 0 0 0 0 0 0 0 0 T 0.20087 - 2 + NaN NaN 90986.8 NaN 3038 2049 5086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5090 33.073 NaN 25689 35 0 5078.2 0.261 + 4142 ETISSKNIISR 11 22 624.3516575799896 1246.688762226779 2 624.3514404296875 MULTI HCD FTMS 0 0 0 5086 14024.2783203125 0.9179879371088118 -3 0.08001327514648438 4 Unmodified _ETISSKNIISR_ ENSG00000179119|ENST00000336349|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1 1.9275035174196113 0.4104672908605315 2 N 1 10 4.6041 0 0 0.36931 0 0 645.3364805879104 484.2872713678344 1129.6237519557449 0 0 0 0 0 0 0 0 0 + N 0.36931 + + 2 + NaN NaN 94803.7 NaN 3039 2049 5086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5091 33.076 NaN 46112 35 0 5984.4 0.261 + 8000 GFLGGGFIHSF 11 20 569.7856819950446 1137.556811056889 2 569.7846069335938 MULTI HCD FTMS 0 0 0 5086 17195.033203125 0.38834348083155906 -4 0.09999465942382812 5 Unmodified _GFLGGGFIHSF_ REV__ENSG00000069345|ENST00000317089|DNAJA2 9.38312468134398 0.3753269387758208 2 {I|L}[HS]{M(Oxidation (M))|F} 4 -1 20.005 0 0 1.7586 0 0 635.3008900373062 0 635.3008900373062 0 13.015384402724592 0 0 0 0.3807196863200844 0 0 0 {I|L}[HS]{M(Oxidation (M))|F} 1.7586 + + 3 NaN NaN 88826.3 NaN 3040 2049 5086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5092 33.08 NaN 30722 35 0 8092.5 0.261 + 35710 YYLGQWTAS 9 19 544.7559794434819 NaN 0 544.7559814453125 PEAK HCD FTMS 0 0 0 5086 6844.5537109375 0.8574382660053782 1 -0.023311614990234375 6 Unmodified _YYLGQWTAS_ REV__ENST00000493471.2_1_14:23495300-23497005:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97110.1 NaN 3041 2049 5086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5094 33.085 NaN 216850 35 0 20891 0.327 + 21839 QATREYTL 8 44 491.2531858545759 980.4918187759519 2 491.25347900390625 MULTI HCD FTMS 0 0 0 5093 127663.0703125 0.8227103141014681 2 -0.04340362548828125 1 Unmodified _QATREYTL_ ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 25.399314129420986 0.40691472774782006 2 T{I|L} 2 6 19.949 0 0 2.0345 0 0 748.3491688459 0 748.3491688459 0 6.9897000433601875 0 0 0 0.5 0 0 0 + T{I|L} 2.0345 + + 31 NaN NaN 116043.2 NaN 3042 2050 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5095 33.09 NaN 175490 35 0 31944 0.261 + 25087 SADPSGAFRM 10 46 527.7348394908661 1053.455126048532 2 527.734619140625 MULTI HCD FTMS 0 0 0 5093 75053.8203125 0.6831473210317514 -3 0.07999420166015625 2 Oxidation (M) _SADPSGAFRM(Oxidation (M))_ ENSG00000196878|ENST00000356082|LAMB3 46.0223103267499 0.09314584965737738 2 {[SA]|[TG]}DPSGA{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 10 0 + 66.036 0 0 6.2685 6.2685 85.15 0 0 0 45.0667531214534 9.259687322722812 9.259687322722812 1.7609125905568135 0 2.4604093769761874 0 0.3807196863200844 0 + + {[SA]|[TG]}DPSGA{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{[SA]|[TG]}DPSQ{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{[SA]|[TG]}DPS[AG]{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{[ET]|[MV]}{[{M(Oxidation (M))|F}H]|[RQ]}A{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 6.2685;6.1013;3.9425;1.5572 +;-;+;- + 143 + NaN NaN 118104.2 NaN 3043 2050 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5096 33.093 NaN 83834 35 0 15527 0.261 + 26447 STMSTNGIPR 10 26 532.2636277528038 1062.5127025724075 2 532.2634887695312 MULTI HCD FTMS 0 0 0 5093 49372.1328125 0.6069902054713932 2 -0.04340362548828125 3 Unmodified _STMSTNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 21.590151480376914 0.30916502439568466 2 {[MG]|[TS]}MSTNG{I|L}[RP] 10 0 + 50.406 0 0 4.744 4.744 85.794 0 0 0 50.406075122407685 7.269987279362624 7.269987279362624 9.164539485499255 0 0.5 0 0 0 + + {[MG]|[TS]}MSTNG{I|L}[RP];{[MG]|[TS]}MSTGGG{I|L}[RP] 4.744;3.8815 +;- + 48 + NaN NaN 111083.1 NaN 3044 2050 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5097 33.096 NaN 50266 35 0 10018 0.261 -1 VMYLWLQK 8 20 561.8057269254434 1121.5969009176868 2 561.8058471679688 MULTI HCD FTMS 0 0 0 5093 11746.5234375 0.6326662878942882 1 -0.023395538330078125 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VMYLWLQK_ ENST00000381341.6_1_2:15735663-15737526:+|nuORF 0.7936320650641473 0.540814922690045 2 P 1 -1 4.6041 0 0 0.41049 0 0 113.20949229800381 908.3155611627561 1021.52505346076 0 0 0 0 0 0 0 0 0 P 0.41049 - 2 + NaN NaN 90232.2 NaN 3045 2050 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5098 33.1 NaN 22843 35 0 4017.1 0.261 -1 WTDRPCVVF 9 19 590.2837357388356 NaN 0 590.2982788085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _WTDRPC(Carbamidomethyl (C))VVF_ nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86602 NaN 3046 2050 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5099 33.103 NaN 45670 35 0 6817.8 0.263 -1 ETPYKCEECC 10 31 459.17212425883986 NaN 0 459.1719970703125 PEAK HCD FTMS 0 0 0 5093 12873.6572265625 0.6312238947761062 23 -0.5706367492675781 6 3 Carbamidomethyl (C) _ETPYKC(Carbamidomethyl (C))EEC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ZNF208|p.G459C|1|0.22|ENSG00000160321|chr19:21973659-21973659|C/A|missense_variant 0.15932191953741626 0.34004793154798674 2 A 1 -1 1.1092 0 0 0.12105 0 0 458.5353973440485 383.7355135553344 842.2709108993829 0 0 0 0 0 0 0 0 0 A 0.12105 - 1 + NaN NaN 87355.5 NaN 3047 2050 5093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5101 33.109 NaN 58494 35 0 6394.7 0.327 + 23007 RAQGEYLT 8 28 469.24046967751883 936.4663864218377 2 469.2402038574219 MULTI HCD FTMS 0 0 0 5100 40569.3046875 0.09021662952862074 11 -0.25313568115234375 1 Unmodified _RAQGEYLT_ CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3;nc|ENSG00000080200|Q68DQ2-2|CRYBG3 2.302733041254933 0.5385759549224092 2 T 1 7 6.9897 0 0 0.74639 0 0 148.1239839886934 684.2755221002561 832.3995060889495 0 0 0 0 0 0 0 0 0 + T 0.74639 + + 11 + NaN NaN 94370.7 NaN 3048 2051 5100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5102 33.113 NaN 110500 35 0 21463 0.261 -1 YFGFCYRCF 9 38 440.5158438940271 1318.5257022822814 3 440.515869140625 MULTI HCD FTMS 0 0 0 5100 53815.53125 1 0 0 2 2 Carbamidomethyl (C) _YFGFC(Carbamidomethyl (C))YRC(Carbamidomethyl (C))F_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|125|1|anti-sense 1.1933415558491238 0.3419706357095994 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2885 0 0 1153.4472396131391 0 1153.4472396131391 0 15.395906230238126 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2885 + + 4 + NaN NaN 95684.1 NaN 3049 2051 5100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5103 33.116 NaN 25991 35 0 4629.2 0.261 + 22201 QLNSVESTGRA 11 13 581.2968067178246 1160.579060502449 2 581.296630859375 MULTI HCD FTMS 0 0 0 5100 19031.794921875 0.31195179099828435 3 -0.0699310302734375 3 Unmodified _QLNSVESTGRA_ REV__nc|ENSG00000149150|O75387-2|SLC43A1 2.0860074813731053 0.4097721463192591 2 S 1 -1 11.237 0 0 0.96823 0 0 670.3314236389709 400.19358240299067 1070.5250060419617 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.96823 + + 1 + NaN NaN 91490.8 NaN 3050 2051 5100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5104 33.12 NaN 93336 35 0 11068 0.262 + 28706 TSPSPWTSL 9 37 488.24226119695925 NaN 0 488.2411193847656 PEAK HCD FTMS 0 0 0 5100 36654.84765625 0.8182220237626556 -1 0.023395538330078125 4 Unmodified _TSPSPWTSL_ REV__ENST00000409245.5_1_2:47256450-47273455:+|nuORF;REV__ENST00000461601.5_1_2:47256450-47277092:+|nuORF 10.823927491677226 0.2427956001690155 2 SV 2 -1 18.271 0 0 1.875 0 0 131.098705888256 654.2417696588499 785.3404755471058 0 0 0 0 0 0.5 0 0.3807196863200844 0 SV 1.875 - 4 + NaN NaN 94054.7 NaN 3051 2051 5100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5105 33.123 NaN 69678 35 0 9866.2 0.261 + -1 LCFRHWNKGLS 11 40 473.24364975068454 1416.7091198522537 3 473.24371337890625 MULTI HCD FTMS 0 0 0 5100 11793.8681640625 0.47336553771298157 2 -0.03665924072265625 5 Carbamidomethyl (C) _LC(Carbamidomethyl (C))FRHWNKGLS_ REV__ENSG00000146215|ENST00000372569|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5-2|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5-4|CRIP3;REV__nc|ENSG00000146215|Q6Q6R5|CRIP3 0.40826533853263924 0.41713015341995335 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94076.9 NaN 3052 2051 5100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5107 33.128 NaN 254650 35 0 55133 0.327 + 3909 EPQPGEARL 9 41 498.7591317149499 995.5037104966998 2 498.7591552734375 MULTI HCD FTMS 0 0 0 5106 99912.984375 0.18472625956675395 9 -0.21314620971679688 1 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 15.248480904072842 0.22861284681709862 2 [EP]QP{[DA]|[EG]}A[R{I|L}] 9 0 + 22.866 0 0 2.2969 2.2969 85.075 0 0 0 0.14908724233677972 3.925449767853312 0.14908724233677972 9.208187539523752 0 0.2742275032520141 0 0 0 + + [EP]QP{[DA]|[EG]}A[R{I|L}];[EP][AG]P{[DA]|[EG]}A[R{I|L}] 2.2969;1.3719 +;- + 109 + NaN NaN 117480.8 NaN 3053 2052 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5108 33.133 NaN 90050 35 0 22126 0.261 -1 TNLTCCMEHGE 11 26 627.232938424558 1252.451323915916 2 627.2335205078125 MULTI HCD FTMS 0 0 0 5106 67232.1953125 0.9863990350719438 -1 0.020008087158203125 2 Oxidation (M) _TNLTCCM(Oxidation (M))EHGE_ ENSG00000026751|ENST00000368043|SLAMF7;nc|ENSG00000026751|Q9NQ25-2|SLAMF7;nc|ENSG00000026751|Q9NQ25-3|SLAMF7;nc|ENSG00000026751|Q9NQ25-5|SLAMF7;nc|ENSG00000026751|Q9NQ25-7|SLAMF7 0.9622753412299311 0.4147004537482263 2 P[EP] 3 -1 8.9524 0 0 0.71479 0 0 911.3187123029312 0 911.3187123029312 0 1.962724883926656 0 0 0 0 0 0 0 P[EP] 0.71479 - 2 NaN NaN 97469.3 NaN 3054 2052 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5109 33.136 NaN 31625 35 0 5301.8 0.261 -1 KYAHMINGF 9 19 548.765849497528 1095.517146061856 2 548.7656860351562 MULTI HCD FTMS 0 0 0 5106 26104.4765625 0.6857914979146343 -3 0.06671524047851562 3 Oxidation (M) _KYAHM(Oxidation (M))INGF_ ENSG00000035687|ENST00000366535|ADSS2 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83268.7 NaN 3055 2052 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5110 33.14 NaN 63040 35 0 8885.9 0.261 + 12561 KSTSHGKVF 9 37 495.77206820299614 989.5295834727923 2 495.7720947265625 MULTI HCD FTMS 0 0 0 5106 8360.7626953125 0.5430476854372885 -1 0.020008087158203125 4 Unmodified _KSTSHGKVF_ ENSG00000147082|ENST00000376042|CCNB3 1.6526216038709556 0.33848895094777925 2 W 1 9 6.9897 0 0 0.70637 0 0 392.23687214642354 408.18610559635005 800.4229777427736 0 0 0 0 0 0 0 0 0 W 0.70637 - 4 + NaN NaN 82967.9 NaN 3056 2052 5106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5112 33.145 NaN 288180 35 0 73282 0.327 -1 SSGPVDPMM 9 27 476.6911297716007 951.3677066100014 2 476.6910705566406 MULTI HCD FTMS 0 0 0 5111 117527.4765625 0.6532975649683685 -13 0.3166656494140625 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 26.682 0 0 2.8046 0 0 427.206201272802 0 427.206201272802 0 26.682437647924218 0 0 0 1.3494850021680094 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.8046 + + 4 NaN NaN 127030 NaN 3057 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5113 33.15 NaN 201600 35 0 30923 0.261 + 15354 LPDDPAKTTM 10 41 552.765959990644 1103.5173670480879 2 552.76611328125 MULTI HCD FTMS 0 0 0 5111 96762.3671875 0.986118556524147 1 -0.03327178955078125 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 40.72490554402381 0.1391161235525472 2 {I|L}PDD{[QV]|[N{I|L}]|[RA]|[KV]}{[VA]|[{I|L}G]}T{M(Oxidation (M))|F} 10 3 + 58.421 0 0 5.2941 5.2941 92.173 0 0 0 30.757659435244733 13.740984232451012 13.740984232451012 58.42145952513228 0 1.6549471895720984 0 0.4247425010840047 0 {I|L}PDD{[QV]|[N{I|L}]|[RA]|[KV]}{[VA]|[{I|L}G]}T{M(Oxidation (M))|F} 5.2941 - 100 + NaN NaN 112001 NaN 3058 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5114 33.153 NaN 55085 35 0 7395.8 0.261 + 26448 STMSTNGIPR 10 27 532.2636277528038 1062.5127025724075 2 532.2633666992188 MULTI HCD FTMS 0 0 0 5111 23907.03125 0.29391749928564054 5 -0.11651611328125 3 Unmodified _STMSTNGIPR_ ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF 4.897010918128616 0.4493830473644964 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L} 3 8 8.072 0 0 0.75971 0 0 0 718.3164156549436 718.3164156549436 8.071968632008437 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L} 0.75971 - 4 + NaN NaN 81101.1 NaN 3059 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5115 33.156 NaN 95184 35 0 9963.4 0.261 -1 ETAMSFVAR 9 38 514.2474823124584 1026.4804116917167 2 514.247802734375 MULTI HCD FTMS 0 0 0 5111 41944.16796875 1 0 0 4 Oxidation (M) _ETAM(Oxidation (M))SFVAR_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 12.240655878213236 0.2545997876781172 2 S{M(Oxidation (M))|F}VAR 5 -1 27.167 0 0 2.6466 0 0 448.1648642410616 0 448.1648642410616 0 18.58349385648225 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}VAR 2.6466 + + 35 + NaN NaN 93339.7 NaN 3060 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5116 33.16 NaN 60985 35 0 15733 0.261 + -1 LNIIRCLC 8 24 531.2829853958689 1060.5514178585377 2 531.2828369140625 MULTI HCD FTMS 0 0 0 5111 20254.013671875 0.6620576335670251 -3 0.060054779052734375 5 2 Carbamidomethyl (C) _LNIIRC(Carbamidomethyl (C))LC(Carbamidomethyl (C))_ REV__ENSG00000008869|ENST00000233099|HEATR5B;REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B 12.531546534597751 0.5015908124873912 2 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3 -1 39.705 0 0 3.7438 0 0 0 717.3184257306191 717.3184257306191 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3.7438 + + 5 + NaN NaN 98753.2 NaN 3061 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5117 33.163 NaN 64682 35 0 7539.7 0.261 -1 YSSFLFWRMP 10 32 450.5489555383666 1348.6250372153 3 450.54864501953125 MULTI HCD FTMS 0 0 0 5111 8148.23486328125 0.5535611606417515 1 -0.03327178955078125 6 Oxidation (M) _YSSFLFWRM(Oxidation (M))P_ ENSG00000213190|ENST00000368921|MLLT11 0.6976657623105312 0.47161084886498755 2 [HA]E 3 -1 15.458 0 0 1.1462 0 0 0 1008.4729123457149 1008.4729123457149 10.853481135844875 0 0 0 0 0.5 0 0 0 [HA]E 1.1462 - 2 + NaN NaN 113697.3 NaN 3062 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5118 33.166 NaN 47495 35 0 5634 0.261 + 9104 HPFIKEYQA 9 32 566.7926406169778 1131.5707283007555 2 566.792724609375 MULTI HCD FTMS 0 0 0 5111 13306.7958984375 0.31198495950562155 -4 0.08336639404296875 7 Unmodified _HPFIKEYQA_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 9.38312468134398 0.279288223203164 2 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.757 0 0 0 747.3656099908811 747.3656099908811 26.593793813122062 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.757 + + 9 + NaN NaN 92522.6 NaN 3063 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5119 33.17 NaN 26444 35 0 6175.5 0.261 + 10789 ISPYRLPHC 9 18 543.2830371675973 1084.5515214019945 2 543.2824096679688 MULTI HCD FTMS 0 0 0 5111 8757.2509765625 0.6642914452991514 -2 0.03665924072265625 8 Unmodified _ISPYRLPHC_ REV__ENSG00000180934|ENST00000641900|OR56A1;REV__ENSG00000181023|ENST00000317121|OR56B1;REV__ENSG00000183389|ENST00000641156|OR56A4;REV__ENSG00000184478|ENST00000641160|OR56A3;REV__nc|ENSG00000180934|Q8NGH5|OR56A1;REV__OR56A1|p.N198*|1|0.1|ENSG00000180934|chr11:6027113-6027114|-/A|frameshift_variant;REV__OR56B1|p.L187Cfs*34|1|0.27|ENSG00000181023|chr11:5737074-5737074|C/-|frameshift_variant 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98495.3 NaN 3064 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5120 33.173 NaN 13854 35 0 2890 0.261 + 33031 YCHRHYRY 8 15 599.2729558263748 1196.5313587195494 2 599.2733154296875 MULTI HCD FTMS 0 0 0 5111 7271.84033203125 0.40539735162072604 5 -0.11651611328125 9 Unmodified _YCHRHYRY_ REV__ENSG00000189134|ENST00000343684|NKAPL 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99448.9 NaN 3065 2053 5111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5122 33.178 NaN 372710 35 0 41103 0.327 + 3800 EPEEESERHIL 11 44 456.5526764482268 1366.6361999448804 3 456.55267333984375 MULTI HCD FTMS 0 0 0 5121 121549.1796875 0.36915017915711024 6 -0.13654708862304688 1 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 3.133959531975271 0.40517618462012517 2 EEE[HA] 5 7 26.466 0 0 1.9366 0 0 753.4117538497418 0 753.4117538497418 0 7.653631197717981 0 0 0 0 0 0.4247425010840047 0 EEE[HA] 1.9366 - 45 NaN NaN 146301.9 NaN 3066 2054 5121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5123 33.183 NaN 186340 35 0 56346 0.261 + 18824 NADPQAVTM 9 34 481.71613286382154 961.4177127944431 2 481.7159423828125 MULTI HCD FTMS 0 0 0 5121 74001.7109375 0.0639334200122313 49 -1.1804351806640625 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 40.23920728925047 0.06424668180817725 2 AVT{M(Oxidation (M))|F} 4 5 53.175 0 0 5.5309 0 0 525.2198195833088 0 525.2198195833088 0 53.17532531436136 0 0 0 2 0 0.4247425010840047 0 + AVT{M(Oxidation (M))|F} 5.5309 + + 44 + NaN NaN 106598.7 NaN 3067 2054 5121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5124 33.186 NaN 157250 35 0 15685 0.261 + 9421 HPVEKPVVL 9 47 509.3082379315984 1016.6019229299968 2 509.30810546875 MULTI HCD FTMS 0 0 0 5121 58438.96875 0.48500402646966145 -4 0.09332656860351562 3 Unmodified _HPVEKPVVL_ ENSG00000125149|ENST00000219139|PHAF1 26.268140514670165 0.13340543277302316 2 HPV 3 6 29.693 0 0 2.9208 0 0 0 680.3970259075688 680.3970259075688 11.63303128443836 0 0 0 0 0.5 0 0 0 + HPV 2.9208 + + 32 + NaN NaN 115599.4 NaN 3068 2054 5121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5125 33.19 NaN 77848 35 0 11668 0.261 + 4135 ETILASSGTDR 11 33 575.2913064956842 1148.5680600581684 2 575.290771484375 MULTI HCD FTMS 0 0 0 5121 31758.478515625 1 0 0 4 Unmodified _ETILASSGTDR_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4 27.088373467376528 0.22106052561220446 2 {I|L}ASSG 5 6 30.662 0 0 2.6696 0 0 343.1737251966434 387.16401086978755 730.3377360664309 0 0 0 0 0 1.110924374808178 0 0 0 + {I|L}ASSG 2.6696 + + 24 + NaN NaN 109629.1 NaN 3069 2054 5121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5126 33.193 NaN 24730 35 0 5726.9 0.261 + 32505 WFVAICHPL 9 14 543.2830371675973 1084.5515214019945 2 543.28515625 MULTI HCD FTMS 0 0 0 5121 6202.11328125 0.47046850735889956 -1 0.03327178955078125 5 Unmodified _WFVAICHPL_ OR7D4|p.R122W|1|0.26|ENSG00000174667|chr19:9214474-9214474|G/A|missense_variant 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99711.3 NaN 3070 2054 5121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5127 33.196 NaN 12179 35 0 2369 0.261 -1 LYMYCHSLT 9 13 602.2600739796217 NaN 0 602.2600708007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _LYM(Oxidation (M))YC(Carbamidomethyl (C))HSLT_ ENSG00000205765|ENST00000381647|RIMOC1;ENST00000509976.1_1_5:41904493-41911314:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96993.9 NaN 3071 2054 5121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5129 33.202 NaN 452250 35 0 109790 0.327 + 838 AWAPKPYHKF 10 44 415.5574913475435 1243.6506446428305 3 415.5572509765625 MULTI HCD FTMS 0 0 0 5128 99836.65625 0.611664104961743 -3 0.07322311401367188 1 Unmodified _AWAPKPYHKF_ CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|5|fusion;ENSG00000071054|ENST00000324219|MAP4K4;ENSG00000141503|ENST00000355280|MINK1;ENSG00000154310|ENST00000436636|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant 12.174745833636585 0.39723355204102767 2 AWA 3 7 51.995 0 0 4.1808 0 0 0 912.4723910536442 912.4723910536442 48.895840698003 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 + AWA 4.1808 + + 29 + NaN NaN 148981.9 NaN 3072 2055 5128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5130 33.206 NaN 127720 35 0 9045.8 0.261 -1 AMNMLHELQ 9 46 551.7546042957756 1101.4946556583511 2 551.7547607421875 MULTI HCD FTMS 0 0 0 5128 76510.578125 0.9148120588290791 -1 0.0233001708984375 2 Oxidation (M) _AMNM(Oxidation (M))LHELQ_ nc|ENSG00000226807|Q6ZUA9|MROH5 22.736283301280096 0.1639198954644489 2 {[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}QVEHQ{I|L} 9 -1 + 72.145 0 0 6.5497 6.5497 89.513 0 0 0 61.687522094009 5.954387282529794 5.954387282529794 9.208187539523749 0 2.774227503252014 0 0.2742275032520141 0.8807196863200843 {[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}QVEHQ{I|L};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[AG]VEHQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[DC]VEHQ{I|L};[HQ]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VQ[DC]{I|L};[HQ]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VQ{M(Oxidation (M))|F}[PS];[HQ]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[DC]Q{I|L};[HQ]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[AG]{M(Oxidation (M))|F}[PS] 6.5497;5.7138;4.2089;3.1001;3.1001;3.0277;2.2641 -;-;-;-;-;-;- 114 + NaN NaN 117583.3 NaN 3073 2055 5128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5131 33.21 NaN 78234 35 0 11445 0.261 + 25507 SFHNIHNTF 9 34 558.7645876760258 1115.5146224188516 2 558.7646484375 MULTI HCD FTMS 0 0 0 5128 57882.58203125 0.6441790983265188 3 -0.05994415283203125 3 Unmodified _SFHNIHNTF_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 33.4449034751529 0.0954363425218424 2 QVHNT{M(Oxidation (M))|F} 6 5 46.235 0 0 4.1447 0 0 371.1588612287125 0 371.1588612287125 0 35.77745672888028 0 0 0 0.9247425010840047 0 0.4247425010840047 0 QVHNT{M(Oxidation (M))|F} 4.1447 - 55 NaN NaN 93796.6 NaN 3074 2055 5128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5132 33.213 NaN 208570 35 0 24437 0.261 + 25157 SAIKEEQEL 9 46 523.7719070769313 1045.5292612206624 2 523.7720947265625 MULTI HCD FTMS 0 0 0 5128 84440.8828125 0.16248819046220506 -5 0.11662673950195312 4 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 63.227496030279354 0.01306643085373406 2 KEEQE{I|L} 6 3 39.007 0 0 3.7308 0 0 271.1527271955094 0 271.1527271955094 0 28.549092634608954 0 0 0 1.6989700043360187 0 0 0.28872548999643577 + KEEQE{I|L} 3.7308 + + 89 NaN NaN 114799.3 NaN 3075 2055 5128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5133 33.216 NaN 110110 35 0 12663 0.261 + 15340 LPDAHSDYA 9 33 494.7222035228457 987.4298541124914 2 494.72198486328125 MULTI HCD FTMS 0 0 0 5128 44663.6953125 0.43283935334768064 -4 0.093231201171875 5 Unmodified _LPDAHSDYA_ ENSG00000239306|ENST00000310137|RBM14 26.88365393820708 0.12808753336095696 2 YA 2 7 21.198 0 0 2.1468 0 0 735.3195223685494 0 735.3195223685494 0 0.22878745280337398 0 0 0 0.5 0 0 0 + YA 2.1468 + + 12 NaN NaN 116855.2 NaN 3076 2055 5128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5135 33.222 NaN 126600 35 0 16240 0.327 -1 SADPSGAFRM 10 39 527.7348394908661 1053.455126048532 2 527.7348022460938 MULTI HCD FTMS 0 0 0 5134 56122.5078125 0.5108326358612755 3 -0.06660079956054688 1 Oxidation (M) _SADPSGAFRM(Oxidation (M))_ ENSG00000196878|ENST00000356082|LAMB3 26.020703789607367 0.2677231329712098 2 {[SA]|[TG]}DPSQS 7 -1 39.213 0 0 3.7223 0 0 0 378.14902673892817 378.14902673892817 19.74886953798432 0 0 0 0 0.9247425010840047 0 0 0 {[SA]|[TG]}DPSQS 3.7223 - 52 + NaN NaN 105159 NaN 3077 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5136 33.226 NaN 59562 35 0 5279.5 0.261 + 23931 RTQSEFTL 8 29 491.2531858545759 980.4918187759519 2 491.2535400390625 MULTI HCD FTMS 0 0 0 5134 23954.216796875 0.15437025896973172 8 -0.20415878295898438 2 Unmodified _RTQSEFTL_ REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF;REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 7.289230182591677 0.5311777711368266 2 T 1 -1 8.9794 0 0 0.91581 0 0 148.1212265902081 728.3034593904675 876.4246859806756 0 0 0 0 0 0 0 0.3494850021680094 0 T 0.91581 + + 2 + NaN NaN 106925.4 NaN 3078 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5137 33.23 NaN 160960 35 0 19216 0.261 -1 ICHCFLAL 8 45 488.74297065652553 975.4713883798511 2 488.7327575683594 MULTI HCD FTMS 0 0 0 5134 8633.2587890625 0.6250711123046241 5 -0.11991500854492188 3 Carbamidomethyl (C) _ICHC(Carbamidomethyl (C))FLAL_ ENSG00000105245|ENST00000252891|NUMBL 6.354104778181461 0.5325651638111438 2 E[{I|L}A] 3 -1 11.796 0 0 1.2092 0 0 644.2951931667636 0 644.2951931667636 0 2.5038591782507815 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E[{I|L}A] 1.2092 - 20 + NaN NaN 119837.1 NaN 3079 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5138 33.233 NaN 53944 35 0 8110.3 0.261 -1 AAGVGDMVM 9 31 441.68865066692535 881.3627484006507 2 441.68841552734375 MULTI HCD FTMS 0 0 0 5134 23165.447265625 0.2498579518164472 -15 0.3666191101074219 4 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 30.224811164608877 0.11021837014094292 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 -1 31.427 0 0 3.5657 0 0 470.2147209121726 0 470.2147209121726 0 31.42667503568731 0 0 0 1 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.5657 + + 14 + NaN NaN 109033 NaN 3080 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5139 33.236 NaN 69330 35 0 5999.4 0.261 -1 RHLSKLFDNM 10 41 426.22070498071014 1275.6402855423305 3 426.220458984375 MULTI HCD FTMS 0 0 0 5134 28656.947265625 0.9396032091740748 -2 0.043308258056640625 5 Oxidation (M) _RHLSKLFDNM(Oxidation (M))_ DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 1.4551175022131473 0.4676015363898197 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100429.2 NaN 3081 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5140 33.24 NaN 37886 35 0 7694.5 0.261 + 16080 LPSQSEMMAE 10 17 561.7440284849412 1121.4735040366822 2 561.743896484375 MULTI HCD FTMS 0 0 0 5134 22814.05859375 0.8312712856383215 3 -0.06660079956054688 6 Unmodified _LPSQSEMMAE_ ENSG00000131781|ENST00000254090|FMO5;ENST00000527849.5_1_1:146647950-146672902:-|nuORF;nc|ENSG00000131781|P49326-3|FMO5 2.498486711656943 0.462078817294651 2 {I|L}P 2 8 20.969 0 0 1.8698 0 0 0 908.3095186822874 908.3095186822874 20.969100130080562 0 0 0 0 0 0 0 0 + {I|L}P 1.8698 + + 1 + NaN NaN 83046.3 NaN 3082 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5141 33.243 NaN 15290 35 0 4433 0.261 + -1 SSMPEWPCC 9 12 585.2083734964448 NaN 0 585.2091674804688 PEAK HCD FTMS 0 0 0 5134 11647.873046875 0.6374655731599879 -2 0.043308258056640625 7 2 Carbamidomethyl (C),Oxidation (M) _SSM(Oxidation (M))PEWPC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__STOML1|p.A137Lfs*20|1|0.14|ENSG00000067221|chr15:73988784-73988784|C/-|frameshift_variant 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85779.6 NaN 3083 2056 5134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5143 33.248 NaN 126770 35 0 30225 0.327 + -1 APQASSPKRPQ 11 44 403.55109341090025 1207.6314508329008 3 403.55120849609375 MULTI HCD FTMS 0 0 0 5142 22554.107421875 0.6295726286968852 -1 0.026584625244140625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))APQASSPKRPQ_ REV__ENST00000313695.11_2_1:155936666-155938994:-|nuORF 3.2813086475875832 0.40452996145431686 2 {I|L}DQ 3 -1 7.167 0 0 0.59347 0 0 641.3658391159071 207.07703577213127 848.4428748880383 0 0 0 0 0 0 0 0 0 {I|L}DQ 0.59347 - 9 + NaN NaN 106551.4 NaN 3084 2057 5142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5144 33.253 NaN 75256 35 0 12880 0.261 + 33702 YLAAGYFL 8 37 459.2417816755111 916.4690104178222 2 459.73004150390625 MULTI HCD FTMS 0 0 0 5142 2238.78564453125 0.28168997037945304 8 -0.21088027954101562 2 Unmodified _YLAAGYFL_ REV__ENSG00000198104|ENST00000641644|OR2T6 2.8892196856762586 0.5377058178582064 2 {I|L} 1 -1 15.485 0 0 1.6896 0 0 785.3745565377426 0 785.3745565377426 0 8.494850021680094 0 0 0 0 0 0 0 {I|L} 1.6896 + + 5 + NaN NaN 95052.9 NaN 3085 2057 5142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5145 33.256 NaN 29791 35 0 6111.8 0.261 -1 CRDEYVML 8 18 543.2416143471503 NaN 0 543.2415771484375 PEAK HCD FTMS 0 0 0 5142 4591.81298828125 0.9318809689744381 1 -0.0133514404296875 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))RDEYVML_ ENSG00000121753|ENST00000373658|ADGRB2;ENST00000530134.5_1_1:32205534-32221699:-|nuORF;nc|ENSG00000121753|O60241-2|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-4|ADGRB2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91889.1 NaN 3086 2057 5142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5147 33.262 NaN 73733 35 0 18698 0.327 -1 CFWEECPPE 9 32 627.232938424558 1252.451323915916 2 627.2334594726562 MULTI HCD FTMS 0 0 0 5146 50686.7578125 0.7436521857539234 5 -0.1266326904296875 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PPE_ ZIC2|p.R309P|1|0.13|ENSG00000043355|chr13:99982990-99982990|G/C|missense_variant 0.5247636613948944 0.34703895399870666 2 SE{[CP]|[EA]}{M(Oxidation (M))|F}[EP] 7 -1 18.996 0 0 1.5167 0 0 445.20991713691564 0 445.20991713691564 0 18.996294548824366 0 0 0 0 0 0 0 SE{[CP]|[EA]}{M(Oxidation (M))|F}[EP] 1.5167 - 8 NaN NaN 112717.8 NaN 3087 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5148 33.266 NaN 90465 35 0 8869 0.264 + 28378 TPEGHAVGL 9 46 440.730077816651 879.445602700102 2 440.7300720214844 MULTI HCD FTMS 0 0 0 5146 53947.9453125 0.7274516531625009 -2 0.039936065673828125 2 Unmodified _TPEGHAVGL_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 39.957323273324995 0.06554068735427583 2 TPE[HQ]V{[VA]|[{I|L}G]} 8 2 + 43.109 0 0 4.9019 4.9019 91.112 0 0 0 27.624562618571247 6.9897000433601875 6.9897000433601875 43.10911268361153 0 1.4247425010840047 0 0.4247425010840047 0 TPE[HQ]V{[VA]|[{I|L}G]} 4.9019 - 25 + NaN NaN 115763.8 NaN 3088 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5149 33.27 NaN 82080 35 0 15432 0.261 + 14678 LGVISSLKSE 10 32 516.8009791727532 1031.5874054123062 2 516.80126953125 MULTI HCD FTMS 0 0 0 5146 37348.1484375 0.5698573569456954 -3 0.05994415283203125 3 Unmodified _LGVISSLKSE_ REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000461872.6_1_6:152697909-152949466:-|nuORF;REV__nc|ENSG00000131018|Q8NF91-10|SYNE1;REV__nc|ENSG00000131018|Q8NF91-4|SYNE1;REV__nc|ENSG00000131018|Q8NF91-6|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1 9.38312468134398 0.42334543440173333 2 V 1 -1 6.9897 0 0 0.67757 0 0 219.15657152734371 710.3387545221311 929.4953260494749 0 0 0 0 0 0 0 0 0 V 0.67757 + + 8 + NaN NaN 92322.2 NaN 3089 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5150 33.273 NaN 29132 35 0 4547.9 0.261 -1 KYAHMINGF 9 19 548.765849497528 1095.517146061856 2 548.7655029296875 MULTI HCD FTMS 0 0 0 5146 27776.708984375 0.7297227667417786 3 -0.07997894287109375 4 Oxidation (M) _KYAHM(Oxidation (M))INGF_ ENSG00000035687|ENST00000366535|ADSS2 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101172.2 NaN 3090 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5151 33.276 NaN 23734 35 0 5071.3 0.261 -1 QQEEMVELR 9 22 589.2796606593116 1176.5447683854231 2 589.2798461914062 MULTI HCD FTMS 0 0 0 5146 5465.89697265625 0.37910666599294957 6 -0.16422271728515625 5 Oxidation (M) _QQEEM(Oxidation (M))VELR_ ENSG00000166813|ENST00000394412|KIF7 2.0597508629832335 0.3354026079994024 2 R 1 -1 14.604 0 0 1.2413 0 0 1002.4314546420622 0 1002.4314546420622 0 14.604093769761874 0 0 0 0 0 0 0 R 1.2413 + + 1 + NaN NaN 85339.6 NaN 3091 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5152 33.28 NaN 47721 35 0 7009.9 0.261 + -1 FSYQWECTL 9 24 617.2658564709528 1232.5171600087056 2 617.2654418945312 MULTI HCD FTMS 0 0 0 5146 19560.25 0.4160249165112763 -4 0.08324432373046875 6 Carbamidomethyl (C) _FSYQWEC(Carbamidomethyl (C))TL_ REV__ENSG00000197969|ENST00000360280|VPS13A;REV__nc|ENSG00000197969|Q96RL7-3|VPS13A 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 107410 NaN 3092 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5153 33.283 NaN 31048 35 0 5849.4 0.263 -1 MIFFGGRV 8 24 484.7558874216131 NaN 0 484.75628662109375 PEAK HCD FTMS 0 0 0 5146 6860.53466796875 1 0 0 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MIFFGGRV_ ENST00000327111.7_1_5:92919302-92919338:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87590.2 NaN 3093 2058 5146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5155 33.288 NaN 301790 35 0 76991 0.327 -1 SSGPVDPMM 9 32 476.6911297716007 951.3677066100014 2 476.6910705566406 MULTI HCD FTMS 0 0 0 5154 132296.1875 0.7353920944808741 -7 0.15983200073242188 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 4 -1 22.435 0 0 2.3582 0 0 427.2061007982816 0 427.2061007982816 0 20.445312593723983 0 0 0 0.9247425010840047 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 2.3582 + + 4 NaN NaN 124964.6 NaN 3094 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5156 33.293 NaN 118650 35 0 15757 0.261 -1 LALPACPDTM 10 41 552.7556499465061 NaN 0 552.7660522460938 PEAK HCD FTMS 0 0 0 5154 6920.84521484375 0.6814037833536593 3 -0.07329559326171875 2 Carbamidomethyl (C),Oxidation (M) _LALPAC(Carbamidomethyl (C))PDTM(Oxidation (M))_ ENSG00000127124|ENST00000372583|HIVEP3;HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3 14.838274106304384 0.3224471714378502 2 P[C(Carbamidomethyl (C))R]H{I|L}D 6 -1 19.654 0 0 1.781 0 0 113.06520192258616 209.05666528873283 322.121867211319 0 0 0 0 0 0 0 0.4247425010840047 0 P[C(Carbamidomethyl (C))R]H{I|L}D 1.781 - 56 + NaN NaN 105498.3 NaN 3095 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5157 33.296 NaN 55404 35 0 8233 0.261 + 23692 RQNLIDNAI 9 27 528.7933349249779 1055.5721169167557 2 528.7935180664062 MULTI HCD FTMS 0 0 0 5154 33039.8359375 0.7735491879524135 1 -0.026638031005859375 3 Unmodified _RQNLIDNAI_ ENSG00000104237|ENST00000220676|RP1 3.944395688203298 0.32111559684428237 2 {I|L} 1 8 5.4846 0 0 0.51958 0 0 107.05888978442506 832.4068697565061 939.4657595409312 0 0 0 0 0 0 0 0 0 + {I|L} 0.51958 + + 1 + NaN NaN 97383.3 NaN 3096 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5158 33.3 NaN 110490 35 0 25566 0.261 + 26585 SVSNVVITK 9 34 473.782187657405 945.54982238161 2 473.78216552734375 MULTI HCD FTMS 0 0 0 5154 41396.01953125 0.8180351389695011 -2 0.04001617431640625 4 Unmodified _SVSNVVITK_ ENSG00000085832|ENST00000371733|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;nc|ENSG00000085832|P42566-2|EPS15 17.44264345198275 0.2096557692338702 2 [VS][NS]VV{I|L}[KT] 9 0 + 42.654 0 0 4.511 4.511 90.56 0 0 0 42.654171688421556 7.147642715192504 7.147642715192504 42.654171688421556 0 0.7302046884880937 2 0 0 + + [VS][NS]VV{I|L}[KT] 4.511 + + 21 + NaN NaN 110329.9 NaN 3097 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5159 33.303 NaN 42140 35 0 5371.9 0.261 + 20325 NYQNVVHKL 9 25 557.8037297663592 1113.5929065995183 2 557.8038330078125 MULTI HCD FTMS 0 0 0 5154 27216.005859375 0.604507636669549 -2 0.04001617431640625 5 Unmodified _NYQNVVHKL_ ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4 24.020572477871973 0.15282392193088168 2 [YN]Q{[NV]|[RG]}VH[K{I|L}] 9 0 + 45.168 0 0 4.056 4.056 85.668 0 0 0 37.72038431917139 5.6424927368725974 5.6424927368725974 9.208187539523749 0 0.805462187404089 2 0 0 + + [YN]Q{[NV]|[RG]}VH[K{I|L}];[YN][AG]{[NV]|[RG]}VH[K{I|L}] 4.056;3.2291 +;- + 31 + NaN NaN 92701.4 NaN 3098 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5160 33.306 NaN 12187 35 0 5156.7 0.261 -1 MLLRRRNSM 9 9 604.8229755540495 NaN 0 604.8231201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _M(Oxidation (M))LLRRRNSM(Oxidation (M))_ nc|ENSG00000173262|Q8TDB8-4|SLC2A14 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81246.1 NaN 3099 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5161 33.31 NaN 31798 35 0 9014.9 0.261 + 23121 RFCRRKCR 8 16 562.8056640625 NaN 0 562.8056640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RFCRRKCR_ ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103868.4 NaN 3100 2059 5154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5163 33.315 NaN 121720 35 0 13236 0.327 + 3801 EPEEESERHIL 11 41 456.5526764482268 1366.6361999448804 3 456.55267333984375 MULTI HCD FTMS 0 0 0 5162 40117.9375 0.12183993222836823 12 -0.3207664489746094 1 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 3.133959531975271 0.40517618462012517 2 EEE[HA] 5 7 26.026 0 0 1.9044 0 0 753.4112105285586 0 753.4112105285586 0 6.332946754800371 0 0 0 0 0 0.3807196863200844 0 EEE[HA] 1.9044 - 29 NaN NaN 105586.5 NaN 3101 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5164 33.319 NaN 38194 35 0 4270.3 0.261 + 9105 HPFIKEYQA 9 29 566.7926406169778 1131.5707283007555 2 566.7933349609375 MULTI HCD FTMS 0 0 0 5162 30380.021484375 0.7122758810553019 3 -0.07332992553710938 2 Unmodified _HPFIKEYQA_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 8.155526934196011 0.2891920862272901 2 HP{M(Oxidation (M))|F} 3 6 28.188 0 0 2.491 0 0 0 747.3702486627561 747.3702486627561 28.187587626244124 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.491 + + 8 + NaN NaN 85284.5 NaN 3102 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5165 33.323 NaN 98954 35 0 31158 0.263 + 20874 PILAFPFP 8 30 451.26327283750874 NaN 0 451.25347900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PILAFPFP_ ENST00000484590.1_1_2:9539095-9539452:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104092 NaN 3103 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5166 33.326 NaN 77415 35 0 11430 0.261 + 3910 EPQPGEARL 9 31 498.7591317149499 995.5037104966998 2 498.7596130371094 MULTI HCD FTMS 0 0 0 5162 25025.826171875 0.0462695343374708 17 -0.4306602478027344 4 Unmodified _EPQPGEARL_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 3.5964929083625545 0.32375295897743744 2 A[R{I|L}] 3 6 5.9421 0 0 0.5969 0 0 637.2716589570153 0 637.2716589570153 0 0.45757490560674974 0 0 0 0 0 0 0 + A[R{I|L}] 0.5969 + + 7 + NaN NaN 105816.6 NaN 3104 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5167 33.33 NaN 15391 35 0 2873 0.261 + 35386 YYDRVHVVF 9 15 599.3040853057471 NaN 0 599.3045654296875 PEAK HCD FTMS 0 0 0 5162 4337.76708984375 0.5397282338701019 1 -0.026676177978515625 5 Unmodified _YYDRVHVVF_ ENST00000472127.1_1_3:42672642-42674322:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86840.6 NaN 3105 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5168 33.333 NaN 21383 35 0 4636.1 0.262 + 21900 QDLAQLPSP 9 16 484.75628662109375 NaN 0 484.75628662109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QDLAQLPSP_ ENST00000476971.5_1_X:133736110-133867533:-|nuORF 1.4819007175156935 0.28806575819904134 2 Q 1 8 3.9794 0 0 0.41174 0 0 411.217366111525 424.18174158267817 835.3991076942032 0 0 0 0 0 0 0 0 0 + Q 0.41174 + + 1 + NaN NaN 85177.8 NaN 3106 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5169 33.336 NaN 16523 35 0 4698.3 0.261 + 1878 CWLPWLSTR 9 12 581.2968067178246 1160.579060502449 2 581.2974243164062 MULTI HCD FTMS 0 0 0 5162 8250.3994140625 0.13523300793399 12 -0.3207664489746094 7 Unmodified _CWLPWLSTR_ ENST00000227638.7_1_11:93913051-93913207:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97970.3 NaN 3107 2060 5162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5171 33.342 NaN 514000 35 0 114370 0.327 + 839 AWAPKPYHKF 10 54 415.5574913475435 1243.6506446428305 3 415.55731201171875 MULTI HCD FTMS 0 0 0 5170 116997.0234375 0.7167996436588039 3 -0.0842437744140625 1 Unmodified _AWAPKPYHKF_ CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|5|fusion;ENSG00000071054|ENST00000324219|MAP4K4;ENSG00000141503|ENST00000355280|MINK1;ENSG00000154310|ENST00000436636|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant 16.565877749689598 0.3561603856738253 2 AWAN 4 7 55.974 0 0 4.5008 0 0 0 798.437693746842 798.437693746842 55.97418457616534 0 0 0 0 0.8807196863200843 1.5228787452803376 0 0 AWAN 4.5008 - 22 + NaN NaN 162528 NaN 3108 2061 5170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5172 33.346 NaN 163230 35 0 14743 0.261 + 9422 HPVEKPVVL 9 49 509.3082379315984 1016.6019229299968 2 509.3082275390625 MULTI HCD FTMS 0 0 0 5170 73434.5078125 0.6094568869489215 3 -0.0842437744140625 2 Unmodified _HPVEKPVVL_ ENSG00000125149|ENST00000219139|PHAF1 22.736283301280096 0.1639198954644489 2 HPV 3 6 29.693 0 0 2.9208 0 0 0 680.3989500640207 680.3989500640207 7.825834421237516 0 0 0 0 0.5 0 0 0 + HPV 2.9208 + + 34 + NaN NaN 130235.1 NaN 3109 2061 5170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5173 33.35 NaN 152610 35 0 41482 0.261 -1 NADPQAVTM 9 30 481.71613286382154 961.4177127944431 2 481.7159423828125 MULTI HCD FTMS 0 0 0 5170 64245 0.05550415681814181 56 -1.3087730407714844 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 2 AVT{M(Oxidation (M))|F} 4 -1 50.745 0 0 5.2782 0 0 525.2175160138687 0 525.2175160138687 0 50.74539712336197 0 0 0 1.8807196863200843 0 0 0 AVT{M(Oxidation (M))|F} 5.2782 + + 38 NaN NaN 109853.7 NaN 3110 2061 5170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5174 33.353 NaN 20819 35 0 5135.7 0.261 + -1 RTEMLARE 8 15 532.2636277528038 1062.5127025724075 2 532.262451171875 MULTI HCD FTMS 0 0 0 5170 6662.798828125 0.08191369096929575 13 -0.33737945556640625 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))RTEM(Oxidation (M))LARE_ REV__ENST00000392876.7_1_12:104190787-104192381:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103631.4 NaN 3111 2061 5170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5175 33.356 NaN 43098 35 0 9516.3 0.261 -1 LPQHPDVEM 9 30 541.2526278028565 1080.490702672513 2 541.2512817382812 MULTI HCD FTMS 0 0 0 5170 5677.97314453125 0.03349414281550778 -6 0.139923095703125 5 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 5.731851221503515 0.3075653528928475 2 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9407 0 0 786.404100486525 0 786.404100486525 0 20.969100130080562 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.9407 + + 2 NaN NaN 93599.2 NaN 3112 2061 5170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5177 33.362 NaN 677810 35 0 73027 0.327 + 25158 SAIKEEQEL 9 71 523.7719070769313 1045.5292612206624 2 523.7718505859375 MULTI HCD FTMS 0 0 0 5176 469937.96875 0.9042938400019676 2 -0.06426239013671875 1 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 110.79276546118962 0.0028129822227594098 2 {[SA]|[TG]}{I|L}KEEQE{I|L} 9 0 + 72.735 0 0 6.9568 6.9568 89.58 0 0 0 5.617019423959945 5.617019423959945 5.617019423959945 9.208187539523742 0 2.1549471895720984 0 0.5774509799928715 0.3807196863200844 + + {[SA]|[TG]}{I|L}KEEQE{I|L};{[SA]|[TG]}{I|L}KEE[AG]E{I|L};{I|L}{[SA]|[TG]}KEEQE{I|L};[K{I|L}]{[SA]|[TG]}EEQE{I|L};{[QN]|[E{I|L}]|[KN]}QEEK{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}EQEK{[SA]|[TG]}{I|L};{[QN]|[E{I|L}]|[KN]}QEES[KA]{I|L};[K{I|L}]{[SA]|[TG]}EE[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}EQES[KA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}EEK{[SA]|[TG]}{I|L} 6.9568;6.0761;5.1983;4.1184;3.6879;3.4;3.3536;3.2377;3.0657;2.9436 +;-;-;-;-;-;-;-;-;- + 785 NaN NaN 184932.8 NaN 3113 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5178 33.366 NaN 85259 35 0 10011 0.261 + 15341 LPDAHSDYA 9 33 494.7222035228457 987.4298541124914 2 494.7222900390625 MULTI HCD FTMS 0 0 0 5176 55785.1796875 0.5406185254797746 3 -0.09756851196289062 2 Unmodified _LPDAHSDYA_ ENSG00000239306|ENST00000310137|RBM14 20.453626601364224 0.18364154288633264 2 YA 2 7 21.198 0 0 2.1468 0 0 735.3195200470935 0 735.3195200470935 0 0.22878745280337398 0 0 0 0.5 0 0 0 + YA 2.1468 + + 6 NaN NaN 108022.7 NaN 3114 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5179 33.37 NaN 166690 35 0 25335 0.261 + 2503 DSGDVAALR 9 42 452.2300796576802 902.4456063821605 2 452.2297668457031 MULTI HCD FTMS 0 0 0 5176 65696.1953125 0.6983513267043584 -1 0.01998138427734375 3 Unmodified _DSGDVAALR_ ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 72.96794272382148 0.008127836904478181 2 {[DS]|[MA]|[CV]|TT}GDVAA{I|L}R 9 0 + 74.843 0 0 8.2934 8.2934 96.198 0 0 0 63.4163750790475 14.09256854528806 14.09256854528806 30.713337517843655 0 2.1989700043360187 0 0 0 + + {[DS]|[MA]|[CV]|TT}GDVAA{I|L}R;{[DS]|[MA]|[CV]|TT}GD[Q{I|L}]{I|L}R;{[DS]|[MA]|[CV]|TT}[QP]{[MG]|[TS]}{I|L}R 8.2934;4.89;0.65111 +;-;- + 75 + NaN NaN 103596 NaN 3115 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5180 33.373 NaN 100360 35 0 15756 0.261 + 32413 VYYYGLAQ 8 42 488.74297065652553 975.4713883798511 2 488.7326965332031 MULTI HCD FTMS 0 0 0 5176 3215.4990234375 0.23281076130150047 11 -0.29410552978515625 4 Unmodified _VYYYGLAQ_ REV__ENSG00000158859|ENST00000367996|ADAMTS4;REV__nc|ENSG00000158859|O75173-2|ADAMTS4 0.7936320650641473 0.540814922690045 2 A 1 -1 8.5392 0 0 0.87539 0 0 131.11716307800424 770.2962130182249 901.4133760962291 0 0 0 0 0 0.3054621874040891 0 0 0 A 0.87539 + + 8 + NaN NaN 93636.7 NaN 3116 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5181 33.376 NaN 80282 35 0 13783 0.261 + 18569 MVLQYDER 8 34 527.254951403515 1052.4953498738298 2 527.2515869140625 MULTI HCD FTMS 0 0 0 5176 33319.04296875 0.10449157680048664 -9 0.2164764404296875 5 Unmodified _MVLQYDER_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 12.531546534597751 0.5015908124873912 2 EA{I|L}PM 5 -1 30.165 0 0 2.866 0 0 493.2196217267594 0 493.2196217267594 0 11.212600430434701 0 0 0 0.4247425010840047 0 0 0 EA{I|L}PM 2.866 - 29 NaN NaN 89670.2 NaN 3117 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5182 33.38 NaN 15887 35 0 5070.2 0.261 + -1 MTLPKKGQELC 11 9 632.3259816070553 1262.6374102809104 2 632.3258056640625 MULTI HCD FTMS 0 0 0 5176 2430.089599609375 0.16087305414926265 1 -0.02667236328125 6 Oxidation (M) _M(Oxidation (M))TLPKKGQELC_ REV__ENSG00000081665|ENST00000540806|ZNF506;REV__ENSG00000237440|ENST00000427401|ZNF737;REV__ENSG00000256771|ENST00000589717|ZNF253;REV__ZNF737|p.H191Lfs*59|1|0.28|ENSG00000237440|chr19:20545631-20545631|T/-|frameshift_variant 0.9622753412299311 0.4147004537482263 2 E{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.82823 0 0 899.4918080060562 0 899.4918080060562 0 10.45757490560675 0 0 0 0 0 0 0 E{[ES]|[DT]|[{I|L}C]} 0.82823 + + 1 NaN NaN 92076.1 NaN 3118 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5183 33.383 NaN 43087 35 0 9211 0.263 + 33683 YKNKDNSL 8 29 491.2531858545759 980.4918187759519 2 491.25390625 MULTI HCD FTMS 0 0 0 5176 15415.2470703125 0.09934182789215559 14 -0.360687255859375 7 Unmodified _YKNKDNSL_ ENST00000497324.1_1_12:9267959-9268445:-|nuORF 3.944395688203298 0.5361403129012058 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90712.9 NaN 3119 2062 5176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5185 33.388 NaN 140070 35 0 29418 0.327 + 72 ADDTERLV 8 34 459.7298879551975 917.445222977195 2 459.7295227050781 MULTI HCD FTMS 0 0 0 5184 72091.1015625 1 0 0 1 Unmodified _ADDTERLV_ ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8 12.531546534597751 0.5015908124873912 2 V{I|L} 2 7 29.024 0 0 3.1635 0 0 687.2814720504223 0 687.2814720504223 0 1.5764470551545173 0 0 0 0.805462187404089 0 0 0 V{I|L} 3.1635 - 9 NaN NaN 113198.9 NaN 3120 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5186 33.397 NaN 116970 35 0 20697 0.275 + 2970 EAAAIIAQR 9 32 471.7721657575189 941.5297785818378 2 471.7720642089844 MULTI HCD FTMS 0 0 0 5184 49067.35546875 0.9891920982397352 2 -0.07089614868164062 2 Unmodified _EAAAIIAQR_ ENSG00000113758|ENST00000393565|DBN1;ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643-2|DBN1;nc|ENSG00000113758|Q16643|DBN1 19.256988751693697 0.19398022840297344 2 [RD]A{I|L}{I|L}A 6 5 29.966 0 0 3.1827 0 0 0 299.1467684381469 299.1467684381469 18.99674684468792 0 0 0 0 0.3054621874040891 0 0 0 [RD]A{I|L}{I|L}A 3.1827 - 33 + NaN NaN 94909.6 NaN 3121 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5187 33.401 NaN 136220 35 0 17930 0.261 + -1 RTSEYPMI 8 44 506.74196405078806 1011.4693751683761 2 506.7418212890625 MULTI HCD FTMS 0 0 0 5184 53991.19921875 1 0 0 3 Oxidation (M) _RTSEYPM(Oxidation (M))I_ REV__ENSG00000105426|ENST00000262963|PTPRS;REV__ENSG00000153707|ENST00000381196|PTPRD;REV__ENST00000588552.5_1_19:5159112-5286160:-|nuORF;REV__nc|ENSG00000105426|Q13332-2|PTPRS;REV__nc|ENSG00000105426|Q13332-3|PTPRS;REV__nc|ENSG00000105426|Q13332-4|PTPRS;REV__nc|ENSG00000105426|Q13332-5|PTPRS;REV__nc|ENSG00000105426|Q13332-6|PTPRS;REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-3|PTPRD;REV__nc|ENSG00000153707|P23468-4|PTPRD;REV__nc|ENSG00000153707|P23468-5|PTPRD;REV__nc|ENSG00000153707|P23468-6|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD 7.910154910731844 0.5302565402355366 2 M{[{M(Oxidation (M))|F}D]|MM}{I|L} 4 -1 9.2968 0 0 0.91914 0 0 487.24019057441564 0 487.24019057441564 0 9.296831374325906 0 0 0 0 0 0 0 M{[{M(Oxidation (M))|F}D]|MM}{I|L} 0.91914 - 4 NaN NaN 110273.6 NaN 3122 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5188 33.404 NaN 80440 35 0 11933 0.262 + 835 AWAHGRRQGLG 11 37 403.55109341090025 1207.6314508329008 3 403.5508728027344 MULTI HCD FTMS 0 0 0 5184 11667.578125 0.3256873656440119 5 -0.14416122436523438 4 Unmodified _AWAHGRRQGLG_ ENSG00000128602|ENST00000249373|SMO 2.9952420565917617 0.40578455234410343 2 G{[VA]|[{I|L}G]} 3 8 10.458 0 0 0.86596 0 0 962.4944302761634 0 962.4944302761634 0 3.4678748622465623 0 0 0 0 0 0 0 + G{[VA]|[{I|L}G]} 0.86596 + + 3 NaN NaN 96670.9 NaN 3123 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5189 33.407 NaN 83594 35 0 9122.9 0.261 + 32379 VYVSRPSHF 9 32 546.2851134973579 1090.5556740615157 2 546.2853393554688 MULTI HCD FTMS 0 0 0 5184 27632.654296875 0.3671125235907734 -2 0.04665374755859375 5 Unmodified _VYVSRPSHF_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 22.65808497894818 0.16459551161911185 2 VYV 3 6 50.445 0 0 4.6257 0 0 0 726.3313380932518 726.3313380932518 30.981362441963327 0 0 0 0 0.4247425010840047 2 0 0 + VYV 4.6257 + + 19 + NaN NaN 95786.8 NaN 3124 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5190 33.411 NaN 26087 35 0 4912.8 0.261 + -1 HPCMPQCFP 9 23 566.7219606377241 1131.4293683422482 2 566.7219848632812 MULTI HCD FTMS 0 0 0 5184 8445.6982421875 0.47815810719076474 1 -0.03759002685546875 6 Carbamidomethyl (C),Oxidation (M) _HPCM(Oxidation (M))PQC(Carbamidomethyl (C))FP_ REV__ENST00000343938.8_1_1:1263420-1264233:+|nuORF 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90352.5 NaN 3125 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5191 33.414 NaN 22807 35 0 5407.3 0.261 + -1 FCSYWMEM 8 16 585.2083734964448 NaN 0 585.20849609375 PEAK HCD FTMS 0 0 0 5184 10958.7744140625 0.5997525372124131 5 -0.14416122436523438 7 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))SYWM(Oxidation (M))EM_ REV__ENSG00000128581|ENST00000315322|IFT22;REV__ENST00000468833.1_1_7:100959585-100959801:-|nuORF;REV__nc|ENSG00000128581|Q9H7X7-2|IFT22;REV__nc|ENSG00000128581|Q9H7X7-3|IFT22 0.6903765706972694 0.38822285293237185 2 G 1 -1 5.4846 0 0 0.46941 0 0 601.7127542176958 506.6528414361938 1108.3655956538896 0 0 0 0 0 0 0 0 0 G 0.46941 - 1 + NaN NaN 91704.6 NaN 3126 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5192 33.417 NaN 22158 35 0 4967.2 0.261 + 22601 QTSGLDWCVE 10 17 569.2475046176784 1136.4804563021567 2 569.2467651367188 MULTI HCD FTMS 0 0 0 5184 9035.1787109375 0.8140573416272184 3 -0.1009063720703125 8 Unmodified _QTSGLDWCVE_ REV__ENST00000221922.10_2_19:47761595-47761831:+|nuORF 2.498486711656943 0.462078817294651 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88534.3 NaN 3127 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5193 33.421 NaN 90785 35 0 9420.9 0.261 -1 VEPCTCFL 8 40 513.2269323882701 NaN 0 513.24169921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Carbamidomethyl (C) _VEPC(Carbamidomethyl (C))TC(Carbamidomethyl (C))FL_ ENST00000493312.6_1_X:1387742-1407416:+|nuORF 2.577480529830294 0.38822285293237185 2 SHTVV 5 -1 24.909 0 0 2.4315 0 0 213.96844897268414 284.1739596002563 498.14240857294044 0 0 0 0 0 0 0 0.9247425010840047 0 SHTVV 2.4315 - 24 + NaN NaN 114186.7 NaN 3128 2063 5184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5195 33.426 NaN 92610 35 0 13078 0.326 + 27 AAGVGDMVM 9 39 441.68865066692535 881.3627484006507 2 441.6885681152344 MULTI HCD FTMS 0 0 0 5194 62737.51171875 0.6766744453653573 -7 0.17757415771484375 1 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 77.98433622928108 0.006504613272346738 2 AARGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 AA + + 65.068 0.12284 0.086462 7.3827 7.3827 66.342 0 0 0 0 60.63100339696028 0 0 0 2.25 0 0.3807196863200844 0 AARGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.3827 - 71 + NaN NaN 101359.3 NaN 3129 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5196 33.43 NaN 66803 35 0 10455 0.261 + -1 VEKRLIKM 8 25 516.8130714000642 NaN 0 516.8012084960938 PEAK HCD FTMS 0 0 0 5194 2902.70458984375 0.9119229379780807 3 -0.08327484130859375 2 Oxidation (M) _VEKRLIKM(Oxidation (M))_ REV__ENSG00000105221|ENST00000392038|AKT2;REV__ENST00000391844.8_1_19:40739781-40791100:-|nuORF;REV__ENST00000487537.2_1_19:40747718-40761168:-|nuORF;REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF;REV__ENST00000578975.1_1_19:40747718-40748063:-|nuORF;REV__nc|ENSG00000105221|P31751-2|AKT2 0.7936320650641473 0.38822285293237185 2 E 1 -1 5.4846 0 0 0.53165 0 0 132.21178988591345 767.3302096002561 899.5419994861695 0 0 0 0 0 0 0 0 0 E 0.53165 + + 2 + NaN NaN 113239.4 NaN 3130 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5197 33.434 NaN 190650 35 0 29008 0.261 + 640 APIQSEPRV 9 45 498.77732349618617 995.5400940591724 2 498.7770690917969 MULTI HCD FTMS 0 0 0 5194 101489.4140625 0.6791548094947716 -3 0.0842437744140625 3 Unmodified _APIQSEPRV_ BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 29.84058131909904 0.11198220037953927 2 AP{I|L}Q 4 5 44.24 0 0 4.4438 0 0 0 583.2839356995124 583.2839356995124 32.557809497117844 0 0 0 0 1.2302046884880937 0 0 0 + AP{I|L}Q 4.4438 + + 151 + NaN NaN 114882.6 NaN 3131 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5198 33.437 NaN 54689 35 0 6996.3 0.261 + -1 PHSCDTNVMTI 11 20 617.2658564709528 1232.5171600087056 2 617.2656860351562 MULTI HCD FTMS 0 0 0 5194 35661.5234375 0.75848122139292 2 -0.06331634521484375 4 Oxidation (M) _PHSCDTNVM(Oxidation (M))TI_ REV__ENST00000466375.2_2_22:44579501-44579708:+|nuORF 4.897010918128616 0.3974440401582579 2 T{I|L} 2 -1 22.959 0 0 1.8628 0 0 1000.365526267775 0 1000.365526267775 0 22.95880017344075 0 0 0 0 0 0.5 0 T{I|L} 1.8628 + + 2 NaN NaN 93213.1 NaN 3132 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5199 33.441 NaN 34755 35 0 10693 0.261 + -1 WWPCMWCPE 9 17 627.232938424558 1252.451323915916 2 627.2335205078125 MULTI HCD FTMS 0 0 0 5194 32873.24609375 0.48230075004748185 11 -0.2797508239746094 5 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92992.8 NaN 3133 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5200 33.444 NaN 50263 35 0 5868.4 0.263 + -1 REMSMACM 8 28 487.682250414114 973.349947895028 2 487.6820373535156 MULTI HCD FTMS 0 0 0 5194 12635.4052734375 0.4670994584837545 -3 0.0842437744140625 6 Oxidation (M) _REMSMACM(Oxidation (M))_ REV__SYNE1|p.I7983M|1|0.08|ENSG00000131018|chr6:152155939-152155939|A/C|missense_variant 2.302733041254933 0.5385759549224092 2 D 1 -1 2.4743 0 0 0.2542 0 0 427.2082375452217 428.0926607721313 855.300898317353 0 0 0 0 0 0 0 0 0 D 0.2542 - 3 + NaN NaN 84553.1 NaN 3134 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5201 33.447 NaN 141330 35 0 38373 0.261 + 28770 TTIMGVMEPP 10 29 538.2612944214967 NaN 0 538.2484130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TTIMGVMEPP_ REV__ENSG00000196367|ENST00000456197|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5|TRRAP 1.4819007175156935 0.33891598740166873 2 E 1 -1 6.9897 0 0 0.6505 0 0 212.10289782561205 730.3383272760374 942.4412251016495 0 0 0 0 0 0 0 0 0 E 0.6505 + + 2 + NaN NaN 101343.9 NaN 3135 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5202 33.451 NaN 44185 35 0 5981.5 0.261 + 3316 EEIFRFFM 8 34 559.7695775022922 1117.5246020713844 2 560.2745361328125 MULTI HCD FTMS 0 0 0 5194 12563.4873046875 0.1651756363101882 -49 1.0483169555664062 8 Unmodified _EEIFRFFM_ REV__DENND4A|p.I626F|1|0.25|ENSG00000174485|chr15:65715555-65715555|T/A|missense_variant 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 109406 NaN 3136 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5203 33.454 NaN 30390 35 0 8867.7 0.261 -1 RGCSLNKTMA 10 23 548.765849497528 1095.517146061856 2 548.7653198242188 MULTI HCD FTMS 0 0 0 5194 10551.89453125 0.27720914223648974 9 -0.2298431396484375 9 Oxidation (M) _RGCSLNKTM(Oxidation (M))A_ ENST00000475659.1_1_1:197237491-197326220:+|nuORF 1.1933415558491238 0.46898715808974617 2 E 1 -1 3.9794 0 0 0.36324 0 0 529.7590416690811 433.68576990299067 963.4448115720718 0 0 0 0 0 0 0 0 0 E 0.36324 - 1 + NaN NaN 106021.5 NaN 3137 2064 5194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5205 33.459 NaN 385950 35 0 102760 0.326 -1 SSGPVDPMM 9 43 476.6911297716007 951.3677066100014 2 476.6910400390625 MULTI HCD FTMS 0 0 0 5204 166557.375 0.925839052259056 -1 0.033306121826171875 1 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 2 QV{M(Oxidation (M))|F} 3 -1 26.95 0 0 2.8328 0 0 559.1982862992577 0 559.1982862992577 0 12.218487496163561 0 0 0 0.4247425010840047 0 0 0 QV{M(Oxidation (M))|F} 2.8328 - 20 + NaN NaN 135759.1 NaN 3138 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5206 33.464 NaN 218500 35 0 24997 0.261 + 28092 THLESAVLR 9 43 513.2905462992097 1024.5665396652194 2 513.2904663085938 MULTI HCD FTMS 0 0 0 5204 74926.8515625 0.3750315568680571 -2 0.07089614868164062 2 Unmodified _THLESAVLR_ REV__ENSG00000112159|ENST00000369393|MDN1 24.020572477871973 0.15282392193088168 2 DVSHTVV{I|L}R 9 -1 + 124.04 0 0 12.106 12.106 99.106 0 0 0 107.84108775949186 12.587418566968154 12.587418566968154 46.64774413198913 0 2.416386562212267 2 1.7302046884880937 0 DVSHTVV{I|L}R;[DV]SHTVV{I|L}R;[VS]DHTVV{I|L}R;[HS][DV]TVV{I|L}R;[HS][KQ]{[SA]|[TG]}V{I|L}[VG] 12.106;7.5536;5.5792;4.9748;1.3913 -;-;-;-;- 132 + NaN NaN 118182.2 NaN 3139 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5207 33.467 NaN 24162 35 0 4435.3 0.261 + 20326 NYQNVVHKL 9 20 557.8037297663592 1113.5929065995183 2 557.803466796875 MULTI HCD FTMS 0 0 0 5204 16063.630859375 0.35679693696817183 4 -0.0866241455078125 3 Unmodified _NYQNVVHKL_ ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87070.5 NaN 3140 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5208 33.47 NaN 79539 35 0 7640.8 0.262 + 3802 EPEEESERHIL 11 41 456.5526764482268 1366.6361999448804 3 456.5527038574219 MULTI HCD FTMS 0 0 0 5204 17667.158203125 0.053655932789082435 17 -0.3765106201171875 4 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 1.9275035174196113 0.4104672908605315 2 EE[HA] 4 8 16.198 0 0 1.1852 0 0 882.4553048626216 0 882.4553048626216 0 6.73393743112328 0 0 0 0 0 0 0 EE[HA] 1.1852 - 17 NaN NaN 98871.4 NaN 3141 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5209 33.474 NaN 30197 35 0 3820.9 0.261 + 8897 HPDAQAEVRL 10 27 568.2965028964466 1134.578452859693 2 568.2966918945312 MULTI HCD FTMS 0 0 0 5204 9269.8515625 0.6092918677430451 1 -0.030010223388671875 5 Unmodified _HPDAQAEVRL_ ENSG00000187244|ENST00000270233|BCAM;ENST00000588303.1_1_19:45312375-45314729:+|nuORF 7.608950283845883 0.4350283211712914 2 HPD 3 7 26.198 0 0 2.309 0 0 0 782.4161471002561 782.4161471002561 14.23516269895728 0 0 0 0 0 0 0 0 + HPD 2.309 + + 4 + NaN NaN 94956.2 NaN 3142 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5210 33.477 NaN 49664 35 0 9275.4 0.264 -1 TAEKVNQDMC 10 28 404.50579928589934 1210.4955684578981 3 404.505615234375 MULTI HCD FTMS 0 0 0 5204 17264.201171875 0.8031682877193346 -1 0.033306121826171875 6 Carbamidomethyl (C),Oxidation (M) _TAEKVNQDM(Oxidation (M))C(Carbamidomethyl (C))_ ENSG00000165475|ENST00000298248|CRYL1;nc|ENSG00000165475|Q9Y2S2-2|CRYL1 3.3196427980023873 0.4577323075863651 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 94423.1 NaN 3143 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5211 33.481 NaN 38886 35 0 11378 0.261 + -1 TWFYMTTESG 10 12 619.7546810031847 1237.4948090731693 2 619.75439453125 MULTI HCD FTMS 0 0 0 5204 13378.3212890625 0.5879039355581048 -2 0.07089614868164062 7 Oxidation (M) _TWFYM(Oxidation (M))TTESG_ REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97436.9 NaN 3144 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5212 33.484 NaN 45572 35 0 7154.7 0.261 -1 KYMEDYHQF 9 23 638.7690305911782 1275.5235082491563 2 638.77001953125 MULTI HCD FTMS 0 0 0 5204 22872.6328125 0.8299567728632744 -1 0.033306121826171875 8 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 5.296884461304476 0.3108627248283497 2 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.3839538752259 0 982.3839538752259 0 7.474250108400469 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 8 NaN NaN 97482.4 NaN 3145 2065 5204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5214 33.489 NaN 202420 35 0 42537 0.327 + 32415 WAARTQVEKR 10 46 415.5675516842059 1243.6808256528177 3 415.8917541503906 MULTI HCD FTMS 0 0 0 5213 1527.372314453125 0.6011420331961411 -2 0.06331634521484375 1 Unmodified _WAARTQVEKR_ ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1 4.3292370932331545 0.45238836448149167 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A 3 7 25.686 0 0 2.0654 0 0 0 912.4743268339561 912.4743268339561 17.102868501927873 0 0 0 0 0 1.5228787452803376 0 0 + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A 2.0654 + + 18 + NaN NaN 105518 NaN 3146 2066 5213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5215 33.494 NaN 73012 35 0 10088 0.261 -1 LPDDPAKTTM 10 36 552.765959990644 1103.5173670480879 2 552.765625 MULTI HCD FTMS 0 0 0 5213 20396.947265625 0.2078680873536507 14 -0.3097686767578125 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 9.5439744041441 0.42184090036563754 2 {I|L}PDD 4 -1 35.165 0 0 3.1866 0 0 0 660.3031371896463 660.3031371896463 28.17532531436136 0 0 0 0 0.9247425010840047 0 0 0 {I|L}PDD 3.1866 + + 12 + NaN NaN 91793.8 NaN 3147 2066 5213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5216 33.497 NaN 61376 35 0 5577 0.261 + 9442 HPVLLTGAPL 10 31 509.3082379315984 1016.6019229299968 2 509.3082275390625 MULTI HCD FTMS 0 0 0 5213 26354.740234375 0.2187265689939791 8 -0.1898193359375 3 Unmodified _HPVLLTGAPL_ ENST00000420887.2_1_3:180538532-180538697:+|nuORF 10.073929032068715 0.4168838835836452 2 HP 2 8 24.464 0 0 2.4064 0 0 0 779.4687594049436 779.4687594049436 17.47425010840047 0 0 0 0 0.5 0 0 0 + HP 2.4064 + + 4 + NaN NaN 90906.5 NaN 3148 2066 5213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5217 33.5 NaN 36592 35 0 4154.3 0.261 -1 NEMQPNGKVF 10 26 590.2766756015552 1178.5387982699103 2 590.276611328125 MULTI HCD FTMS 0 0 0 5213 18697.083984375 0.8745763315766417 -2 0.06331634521484375 4 Oxidation (M) _NEM(Oxidation (M))QPNGKVF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 2.735195868890462 0.4608258780945842 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7792 0 0 914.3931141584 0 914.3931141584 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.7792 + + 1 NaN NaN 93892.9 NaN 3149 2066 5213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5218 33.504 NaN 20340 35 0 4798.3 0.261 + 20787 PHDIATTLQH 10 18 566.7926406169778 1131.5707283007555 2 566.7931518554688 MULTI HCD FTMS 0 0 0 5213 6015.8671875 0.1410452294608177 9 -0.21643447875976562 5 Unmodified _PHDIATTLQH_ ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;nc|ENSG00000156650|Q8WYB5-2|KAT6B;nc|ENSG00000156650|Q8WYB5-3|KAT6B 2.9952420565917617 0.4594494122822477 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94194.7 NaN 3150 2066 5213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5220 33.509 NaN 276270 35 0 32422 0.327 + 15977 LPQHPDVEM 9 44 541.2526278028565 1080.490702672513 2 541.2528076171875 MULTI HCD FTMS 0 0 0 5219 169521.375 1 0 0 1 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 79.59630418116434 0.005983006570063981 2 {I|L}PQH[DP]VE{M(Oxidation (M))|F} 9 0 + 96.436 0 0 8.9252 8.9252 95.278 0 0 0 69.26677000861204 16.478174818886373 16.478174818886373 14.208187539523749 0 2 1.154901959985743 1.305462187404089 0.5 + + {I|L}PQH[DP]VE{M(Oxidation (M))|F};{I|L}P[AG]H[DP]VE{M(Oxidation (M))|F};[QP]H{I|L}[DP]VE{M(Oxidation (M))|F};[QP]H{I|L}[DP]D{I|L}{M(Oxidation (M))|F};[QP]H{I|L}[DP]D{M(Oxidation (M))|F}{I|L};[DP]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[KS]{I|L}{M(Oxidation (M))|F};[DP]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[KS]{M(Oxidation (M))|F}{I|L} 8.9252;7.6103;4.9824;4.3107;3.0829;1.9273;0.69953 +;-;-;-;-;-;- + 140 + NaN NaN 126017.1 NaN 3151 2067 5219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5221 33.514 NaN 138980 35 0 15368 0.261 + 25159 SAIKEEQEL 9 43 523.7719070769313 1045.5292612206624 2 523.7719116210938 MULTI HCD FTMS 0 0 0 5219 89681.0625 0.17257178133381343 7 -0.16986083984375 2 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 46.0223103267499 0.037698999139422325 2 {[SA]|[TG]}{I|L}KEEQE{I|L} 9 0 + 47.628 0 0 4.5554 4.5554 86.296 0 0 0 1.0391719390811716 1.0391719390811716 1.0391719390811716 9.208187539523749 0 2.392159058960253 0 1.2614393726401687 0 + + {[SA]|[TG]}{I|L}KEEQE{I|L};{[SA]|[TG]}{I|L}KEE[AG]E{I|L} 4.5554;3.6747 +;- + 103 + NaN NaN 106212 NaN 3152 2067 5219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5222 33.517 NaN 100890 35 0 15851 0.261 + 2504 DSGDVAALR 9 34 452.2300796576802 902.4456063821605 2 452.22991943359375 MULTI HCD FTMS 0 0 0 5219 54889.484375 0.5834758626898132 4 -0.09998321533203125 3 Unmodified _DSGDVAALR_ ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 60.07390631473393 0.0174780869009295 2 {[DS]|[MA]|[CV]|TT}[DG]VAA{I|L}R 9 0 + 57.101 0 0 6.3273 6.3273 92.718 0 0 0 7.7815125038364386 7.7815125038364386 7.7815125038364386 29.006375246153905 0 2.1237125054200234 0 0 0 + + {[DS]|[MA]|[CV]|TT}[DG]VAA{I|L}R;{[DS]|[MA]|[CV]|TT}[RD]AA{I|L}[VG];{[DS]|[MA]|[CV]|TT}[DG][Q{I|L}]{I|L}R;{[DS]|[MA]|[CV]|TT}[DG]V[RV][VG] 6.3273;3.1131;2.924;2.6425 +;-;-;- + 51 + NaN NaN 114417.2 NaN 3153 2067 5219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5223 33.52 NaN 130030 35 0 34137 0.261 -1 NADPQAVTM 9 33 481.71613286382154 961.4177127944431 2 481.7159729003906 MULTI HCD FTMS 0 0 0 5219 50572.07421875 0.04369149876342449 62 -1.4502334594726562 4 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 33.4449034751529 0.0954363425218424 2 AVT{M(Oxidation (M))|F} 4 -1 51.414 0 0 5.3478 0 0 525.2194838899494 0 525.2194838899494 0 51.414412723804546 0 0 0 2 0 0.4247425010840047 0 AVT{M(Oxidation (M))|F} 5.3478 + + 39 + NaN NaN 98535 NaN 3154 2067 5219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5224 33.524 NaN 292370 35 0 57206 0.262 + 9603 HSLPQEPVM 9 50 527.254951403515 1052.4953498738298 2 527.2548828125 MULTI HCD FTMS 0 0 0 5219 87669.9453125 0.27494099492315743 -4 0.1208648681640625 5 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 57.72198328787511 0.020768266150574023 2 [HS]{I|L}PQE[VP]{M(Oxidation (M))|F} 9 0 + 51.787 0 0 4.9204 4.9204 89.124 0 0 0 1.3811278504522306 18.466897791054336 1.3811278504522306 15.884315473529185 0 2.3182503180159344 0 0.6747425010840047 0.3494850021680094 + + [HS]{I|L}PQE[VP]{M(Oxidation (M))|F};[RK]{[YD]|[{M(Oxidation (M))|F}M]}E[VP]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]WW[R{I|L}]{M(Oxidation (M))|F};[YR]{[CA]|SS}EA{I|L}PM;[{M(Oxidation (M))|F}V]WW{[RE]|[WV]}M 4.9204;3.4112;1.806;1.7846;0.71292 +;-;-;-;- + 149 NaN NaN 139792.5 NaN 3155 2067 5219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5225 33.527 NaN 13289 35 0 4043.1 0.261 -1 MRVWRCGLK 9 13 632.3259816070553 1262.6374102809104 2 632.3260498046875 MULTI HCD FTMS 0 0 0 5219 10305.3740234375 0.6822205212381297 6 -0.14656829833984375 6 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RVWRC(Carbamidomethyl (C))GLK_ ENST00000234875.8_1_1:6246434-6246473:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89053.6 NaN 3156 2067 5219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5227 33.532 NaN 108640 35 0 14182 0.327 + 2718 DVLQLRAQ 8 49 471.7721657575189 941.5297785818378 2 472.25830078125 MULTI HCD FTMS 0 0 0 5226 9424.5771484375 0.3870025207300573 7 -0.17317962646484375 1 Unmodified _DVLQLRAQ_ REV__ENSG00000125337|ENST00000643607|KIF25;REV__nc|ENSG00000125337|Q9UIL4-2|KIF25 5.230669730166228 0.5342319408533849 2 SP 2 -1 12.078 0 0 1.2828 0 0 187.10950377890657 567.3117769830686 754.4212807619751 0 0 0 0 0 0 0 0.5 0 SP 1.2828 - 12 + NaN NaN 98886.9 NaN 3157 2068 5226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5228 33.537 NaN 57093 35 0 14098 0.261 -1 NTMDADSLVSR 11 21 612.7799369128102 1223.5453208924202 2 612.7798461914062 MULTI HCD FTMS 0 0 0 5226 13891.03515625 1 0 0 2 Oxidation (M) _NTM(Oxidation (M))DADSLVSR_ nc|ENSG00000110911|P49281-4|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2 2.0860074813731053 0.4097721463192591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99257.2 NaN 3158 2068 5226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5229 33.54 NaN 32603 35 0 7950.7 0.261 + -1 SCNCGQWM 8 24 529.6782163665041 NaN 0 529.7539672851562 PEAK HCD FTMS 0 0 0 5226 2469.1201171875 1 0 0 3 2 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))NC(Carbamidomethyl (C))GQWM(Oxidation (M))_ REV__ENST00000552783.5_1_12:50616294-50616432:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79146.9 NaN 3159 2068 5226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5231 33.546 NaN 129030 35 0 12941 0.327 + 32380 VYVSRPSHF 9 42 546.2851134973579 1090.5556740615157 2 546.2852172851562 MULTI HCD FTMS 0 0 0 5230 62336.7734375 0.8281727105649404 4 -0.10991287231445312 1 Unmodified _VYVSRPSHF_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 19.361941925380144 0.1930734562688509 2 [YV]V 3 6 34.705 0 0 3.1823 0 0 0 726.3331069813567 726.3331069813567 15.241049764686139 0 0 0 0 0.4247425010840047 2 0 0 + [YV]V 3.1823 + + 17 + NaN NaN 95722.9 NaN 3160 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5232 33.55 NaN 120220 35 0 18045 0.263 + 9589 HSALKGKA 8 52 406.2429624416449 NaN 0 406.24273681640625 PEAK HCD FTMS 0 0 0 5230 28891.357421875 0.8842433879196717 -1 0.01335906982421875 2 Unmodified _HSALKGKA_ REV__ENSG00000147434|ENST00000276410|CHRNA6;REV__nc|ENSG00000147434|Q15825-2|CHRNA6 8.593279151180031 0.38822285293237185 2 TV 2 -1 21.083 0 0 2.6014 0 0 224.09166085536202 383.24118982486567 607.3328506802277 0 0 0 0 0 0.8252574989159953 0 0.4247425010840047 0 TV 2.6014 - 10 + NaN NaN 111865.2 NaN 3161 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5233 33.554 NaN 47964 35 0 5585.2 0.261 + 7957 GEDKEVIQ 8 39 459.2324680990128 NaN 0 459.23236083984375 PEAK HCD FTMS 0 0 0 5230 12034.2890625 0.2625290828791861 6 -0.159820556640625 3 Unmodified _GEDKEVIQ_ REV__ENSG00000187605|ENST00000409262|TET3;REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF;REV__nc|ENSG00000187605|O43151-2|TET3;REV__nc|ENSG00000187605|O43151-3|TET3 2.0597508629832335 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.76269 0 0 130.09926129392562 684.2595919244749 814.3588532184006 0 0 0 0 0 0 0 0 0 V 0.76269 + + 1 + NaN NaN 99499.6 NaN 3162 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5234 33.557 NaN 42064 35 0 7795.4 0.261 + 31000 VSFDGRRF 8 24 492.2557000566259 982.4968471800519 2 492.2558288574219 MULTI HCD FTMS 0 0 0 5230 13842.384765625 0.8974456996866734 1 -0.0300140380859375 4 Unmodified _VSFDGRRF_ ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant;nc|ENSG00000275395|Q9Y6R7|FCGBP 6.723162845929126 0.5320176132289695 2 VS 2 6 25.217 0 0 2.5666 0 0 0 793.3715086299471 793.3715086299471 18.226825097560422 0 0 0 0 0.4247425010840047 0 0 0 + VS 2.5666 + + 7 + NaN NaN 95508.7 NaN 3163 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5235 33.561 NaN 16775 35 0 4439 0.261 + -1 FRMDWCAM 8 15 566.7219606377241 1131.4293683422482 2 566.721435546875 MULTI HCD FTMS 0 0 0 5230 8557.466796875 0.4844859487759479 7 -0.17649459838867188 5 Carbamidomethyl (C),Oxidation (M) _FRMDWC(Carbamidomethyl (C))AM(Oxidation (M))_ REV__ENSG00000196455|ENST00000356763|PIK3R4;REV__ENST00000512362.5_1_3:130399450-130405229:-|nuORF 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93199.9 NaN 3164 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5236 33.564 NaN 17298 35 0 6191.8 0.261 -1 CCCCWARP 8 16 585.2083734964448 NaN 0 585.2078247070312 PEAK HCD FTMS 0 0 0 5230 11827.7568359375 0.6473102651681722 11 -0.2531547546386719 6 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))WARP_ ENSG00000177685|ENST00000525077|CRACR2B;ENST00000526531.1_1_11:830548-831706:+|nuORF;ENST00000527763.5_1_11:829331-831706:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95434.8 NaN 3165 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5237 33.567 NaN 16041 35 0 3732.9 0.261 + 23677 RQHMQERR 8 14 570.7939090297823 1139.5732651263645 2 570.793701171875 MULTI HCD FTMS 0 0 0 5230 6711.7861328125 0.5187340685111852 -3 0.056613922119140625 7 Unmodified _RQHMQERR_ ENSG00000114859|ENST00000265593|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87613.2 NaN 3166 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5238 33.57 NaN 9679.9 35 0 4025.4 0.261 + -1 KNCCRCMCF 9 8 582.7158203125 NaN 0 582.7158203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _KNC(Carbamidomethyl (C))CRCMCF_ REV__ENSG00000007062|ENST00000447510|PROM1;REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF;REV__nc|ENSG00000007062|O43490-2|PROM1;REV__nc|ENSG00000007062|O43490-3|PROM1;REV__nc|ENSG00000007062|O43490-4|PROM1;REV__nc|ENSG00000007062|O43490-5|PROM1;REV__nc|ENSG00000007062|O43490-6|PROM1;REV__nc|ENSG00000007062|O43490-7|PROM1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80687.4 NaN 3167 2069 5230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5240 33.576 NaN 638060 35 0 68998 0.327 + 15800 LPHSGEAQL 9 79 476.2484073749024 950.4822618166048 2 476.2482604980469 MULTI HCD FTMS 0 0 0 5239 324465.96875 0.5903493569952706 -3 0.06666946411132812 1 Unmodified _LPHSGEAQL_ ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1 86.33184430468982 0.004622086694044132 2 SGEAQ{I|L} 6 3 53.058 0 0 5.5822 0 0 347.19490248847814 0 347.19490248847814 0 25.042228497687873 0 0 0 1.5356668758921828 0 0.9119543704721594 0.4247425010840047 + SGEAQ{I|L} 5.5822 + + 700 NaN NaN 177052 NaN 3168 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5241 33.58 NaN 159530 35 0 23245 0.261 + 641 APIQSEPRV 9 41 498.77732349618617 995.5400940591724 2 498.77734375 MULTI HCD FTMS 0 0 0 5239 92983.8828125 0.6222368293378637 3 -0.07989883422851562 2 Unmodified _APIQSEPRV_ BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 43.77239144664712 0.04802738721622131 2 AP{I|L}Q{[ES]|[DT]|[{I|L}C]}V[RP] 9 2 + 64.671 0 0 6.4961 6.4961 89.408 0 0 0 48.47295930833134 5.6424927368725974 5.6424927368725974 9.208187539523749 0 1.774227503252014 0 0.3807196863200844 0.4247425010840047 AP{I|L}Q{[ES]|[DT]|[{I|L}C]}V[RP];AP{I|L}[AG]{[ES]|[DT]|[{I|L}C]}V[RP] 6.4961;5.5711 -;- 305 + NaN NaN 107763.6 NaN 3169 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5242 33.584 NaN 123580 35 0 16422 0.261 + 28 AAGVGDMVM 9 43 441.68865066692535 881.3627484006507 2 441.6885986328125 MULTI HCD FTMS 0 0 0 5239 69142.6953125 0.7457594941188723 -1 0.0300140380859375 3 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 97.07464715276575 0.004340583992084827 2 AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 77.731 0 0 8.8194 8.8194 90.769 0 0 0 0.2557626122369072 0.2557626122369072 0.2557626122369072 5.5141591348905905 0 3.142159058960253 0 0.4247425010840047 0 + + AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.8194;8.1937 +;- + 118 NaN NaN 109691.4 NaN 3170 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5243 33.587 NaN 171140 35 0 58985 0.261 + 23304 RILDGKRIQY 10 26 421.25074840786334 1260.73041582379 3 421.2507629394531 MULTI HCD FTMS 0 0 0 5239 56526.390625 0.8079629832700658 -2 0.04337310791015625 4 Unmodified _RILDGKRIQY_ ENSG00000142669|ENST00000270792|SH3BGRL3 7.477065608646677 0.43572640772348226 2 Y 1 9 21.99 0 0 1.7442 0 0 1079.6565613089447 0 1079.6565613089447 0 21.989700043360187 0 0 0 0.5 0 0 0 + Y 1.7442 + + 2 + NaN NaN 122585.3 NaN 3171 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5244 33.59 NaN 55270 35 0 8644.2 0.261 + -1 RVSEKMVCHF 10 21 436.87923803806666 NaN 0 436.8789367675781 PEAK HCD FTMS 0 0 0 5239 24806.775390625 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _RVSEKM(Oxidation (M))VC(Carbamidomethyl (C))HF_ REV__ENSG00000156920|ENST00000394143|ADGRG4;REV__nc|ENSG00000156920|Q8IZF6-3|ADGRG4 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109879.9 NaN 3172 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5245 33.594 NaN 67827 35 0 13272 0.261 -1 GCPGKMGEPGL 11 25 559.7522642542643 1117.4899755753286 2 559.751953125 MULTI HCD FTMS 0 0 0 5239 13507.9150390625 0.6166819126945183 22 -0.5128135681152344 6 Carbamidomethyl (C),Oxidation (M) _GC(Carbamidomethyl (C))PGKM(Oxidation (M))GEPGL_ COL4A3|p.G1491Afs*38|1|0.78|ENSG00000169031|chr2:227308907-227308907|G/-|frameshift_variant;ENSG00000169031|ENST00000396578|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-5|COL4A3 1.3295316138638542 0.4130897924953357 2 E 1 -1 6.9897 0 0 0.62548 0 0 703.2762132235692 282.1456698053344 985.4218830289037 0 0 0 0 0 0 0 0 0 E 0.62548 + + 3 + NaN NaN 110739 NaN 3173 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5246 33.597 NaN 38282 35 0 4847.2 0.261 -1 SLSMGCMMFE 10 27 620.7195668094583 1239.4245806857166 2 620.719970703125 MULTI HCD FTMS 0 0 0 5239 13106.1787109375 0.5199463391755554 -2 0.04337310791015625 7 Carbamidomethyl (C),3 Oxidation (M) _SLSM(Oxidation (M))GC(Carbamidomethyl (C))M(Oxidation (M))M(Oxidation (M))FE_ TMEM244|p.V37M|1|0.11|ENSG00000203756|chr6:129845777-129845777|C/T|missense_variant 3.5964929083625545 0.45626689593999237 2 Y[PA]T{M(Oxidation (M))|F} 5 -1 30.713 0 0 2.478 0 0 642.1804066388687 0 642.1804066388687 0 30.713337517843655 0 0 0 1 0 0 0 Y[PA]T{M(Oxidation (M))|F} 2.478 - 7 NaN NaN 99771.9 NaN 3174 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5247 33.6 NaN 24755 35 0 4397.1 0.263 + 27903 TEEHVWST 8 19 494.7222035228457 987.4298541124914 2 494.7226257324219 MULTI HCD FTMS 0 0 0 5239 5887.861328125 0.057059723160729936 11 -0.2431182861328125 8 Unmodified _TEEHVWST_ REV__ENSG00000270765|ENST00000604641|GAS2L2 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94737.1 NaN 3175 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5248 33.604 NaN 45722 35 0 7453.1 0.262 + 21989 QEVFKFAVRV 10 31 408.2353234770262 1221.6841410312786 3 408.5688171386719 MULTI HCD FTMS 0 0 0 5239 11486.5380859375 1 0 0 9 Unmodified _QEVFKFAVRV_ tr|U7T2U6|U7T2U6_FUSNUBeta-ketoacyl-[acyl-carrier-protein]synthaseIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fabHPE=3SV=1 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93261 NaN 3176 2070 5239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5250 33.609 NaN 243250 35 0 23905 0.327 + 2732 DVTIATLHR 9 58 513.2905462992097 1024.5665396652194 2 513.29052734375 MULTI HCD FTMS 0 0 0 5249 121245.7578125 0.6068716937630803 4 -0.09649276733398438 1 Unmodified _DVTIATLHR_ REV__ENSG00000007202|ENST00000528896|BLTP2;REV__ENST00000577417.5_1_17:26966838-26970337:-|nuORF;REV__ENST00000579253.1_1_17:26967576-26969063:-|nuORF;REV__ENST00000580882.5_1_17:26966325-26972074:-|nuORF;REV__nc|ENSG00000007202|Q14667-2|BLTP2;REV__nc|ENSG00000007202|Q14667-4|BLTP2 24.020572477871973 0.15282392193088168 2 DVSHTVV{I|L}R 9 -1 + 122.4 0 0 11.947 11.947 99.111 0 0 0 111.43175948177209 12.98332479720628 12.98332479720628 47.140697330661396 0 2.328340932684427 2 1.274227503252014 0 DVSHTVV{I|L}R;[DV]SHTVV{I|L}R;[VS]DHTVV{I|L}R;[HS][DV]TVV{I|L}R;[VS][HS]EVV{I|L}R;[HS][VS]EVV{I|L}R 11.947;7.3456;5.3712;2.9753;2.2326;1.9388 -;-;-;-;-;- 163 + NaN NaN 129594.3 NaN 3177 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5251 33.614 NaN 95245 35 0 9091.1 0.261 + 7364 FVEDLGFW 8 37 506.7419529112571 1011.4693528893142 2 506.74151611328125 MULTI HCD FTMS 0 0 0 5249 36098.3671875 0.489723792953458 -7 0.183258056640625 2 Unmodified _FVEDLGFW_ ENSG00000186106|ENST00000335659|ANKRD46;nc|ENSG00000186106|Q86W74-1|ANKRD46 9.347437153973935 0.5250182646323369 2 Q 1 8 4.6041 0 0 0.45519 0 0 276.17090425825796 604.2141207330686 880.3850249913266 0 0 0 0 0 0 0 0 0 Q 0.45519 - 2 + NaN NaN 103716.4 NaN 3178 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5252 33.617 NaN 39203 35 0 6201 0.261 + -1 FVHKCALI 8 28 494.27640006577553 NaN 0 494.2646179199219 PEAK HCD FTMS 0 0 0 5249 4647.35595703125 0.644334927147145 -2 0.06332778930664062 3 Carbamidomethyl (C) _FVHKC(Carbamidomethyl (C))ALI_ REV__RNF130|p.P281A|1|0.21|ENSG00000113269|chr5:179978210-179978210|G/C|missense_variant 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.46669 0 0 166.12108518838858 670.3540743463499 836.4751595347384 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46669 + + 1 + NaN NaN 86420.6 NaN 3179 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5253 33.62 NaN 24145 35 0 5164.1 0.261 + 2155 DHDYDTDEPF 10 16 627.232938424558 1252.451323915916 2 627.23291015625 MULTI HCD FTMS 0 0 0 5249 17069.359375 0.25043358376943875 18 -0.3931159973144531 4 Unmodified _DHDYDTDEPF_ REV__ENSG00000142408|ENST00000270458|CACNG8 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95502.8 NaN 3180 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5254 33.624 NaN 37780 35 0 5092.2 0.261 -1 TCCSSCSSSS 10 22 561.678366894589 1121.3421808559779 2 561.6788940429688 MULTI HCD FTMS 0 0 0 5249 19562.2265625 0.8620947577261244 -2 0.06332778930664062 5 3 Carbamidomethyl (C) _TC(Carbamidomethyl (C))C(Carbamidomethyl (C))SSC(Carbamidomethyl (C))SSSS_ SH3PXD2A|p.S704C|1|0.19|ENSG00000107957|chr10:103603107-103603107|G/C|missense_variant 0 0.4753037046562868 2 [RP]S 3 -1 10.458 0 0 0.93259 0 0 0 778.132957793731 778.132957793731 4.9730248405664685 0 0 0 0 0 0 0 0 [RP]S 0.93259 - 4 NaN NaN 104213.8 NaN 3181 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5255 33.627 NaN 23000 35 0 6134.8 0.261 -1 MLQLYIQIC 9 21 570.7939090297823 1139.5732651263645 2 570.7938232421875 MULTI HCD FTMS 0 0 0 5249 9117.251953125 0.7046453962775876 -1 0.033313751220703125 6 Oxidation (M) _M(Oxidation (M))LQLYIQIC_ ENSG00000132975|ENST00000405846|GPR12 1.844237919475145 0.33703635659052655 2 V{[ES]|[DT]|[{I|L}C]} 3 -1 8.9524 0 0 0.78559 0 0 806.3910389630875 0 806.3910389630875 0 8.952424927286843 0 0 0 0 0 0 0 V{[ES]|[DT]|[{I|L}C]} 0.78559 - 2 NaN NaN 86030.1 NaN 3182 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5256 33.63 NaN 20022 35 0 4534 0.261 + 24365 RYIHPQQEAF 10 16 644.8255560105686 1287.636559087937 2 644.82568359375 MULTI HCD FTMS 0 0 0 5249 5186.59912109375 0.2911148026894208 -4 0.09998321533203125 7 Unmodified _RYIHPQQEAF_ ENSG00000071894|ENST00000616140|CPSF1 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90782.8 NaN 3183 2071 5249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5258 33.636 NaN 106940 35 0 30647 0.327 + 25072 SADKPDSVL 9 26 466.2398960690336 930.4652392048672 2 466.23956298828125 MULTI HCD FTMS 0 0 0 5257 99101.4765625 1 0 0 1 Unmodified _SADKPDSVL_ ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-4|MCM9 11.494710602746466 0.2610445893512368 2 V{I|L} 2 7 20.969 0 0 2.2536 0 0 700.3040638654312 0 700.3040638654312 0 16.989700043360187 0 0 0 0 0 0 0 + V{I|L} 2.2536 + + 3 NaN NaN 94083.4 NaN 3184 2072 5257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5259 33.64 NaN 62943 35 0 6885.8 0.261 -1 LPDDPAKTTM 10 35 552.765959990644 1103.5173670480879 2 552.7657470703125 MULTI HCD FTMS 0 0 0 5257 31995.396484375 0.32606947425595345 20 -0.452911376953125 2 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 6.630372943996041 0.44020808660041416 2 {I|L}PDD 4 -1 30.918 0 0 2.8017 0 0 0 660.3026329179468 660.3026329179468 19.948500216800937 0 0 0 0 0.5 0 0 0 {I|L}PDD 2.8017 + + 20 + NaN NaN 90491.4 NaN 3185 2072 5257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5260 33.644 NaN 30749 35 0 4905.2 0.261 -1 KYMEDYHQF 9 20 638.7690305911782 1275.5235082491563 2 638.7689819335938 MULTI HCD FTMS 0 0 0 5257 18803.86328125 0.6823173271832312 6 -0.12655258178710938 3 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 5.296884461304476 0.3108627248283497 2 Q{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.644 0 0 982.3860951154312 0 982.3860951154312 0 20.969100130080562 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 1.644 + + 1 NaN NaN 93430.7 NaN 3186 2072 5257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5261 33.647 NaN 37528 35 0 3638.1 0.263 + 9443 HPVLLTGAPL 10 27 509.3082379315984 1016.6019229299968 2 509.3083190917969 MULTI HCD FTMS 0 0 0 5257 8801.955078125 0.07305029067090969 14 -0.29659271240234375 4 Unmodified _HPVLLTGAPL_ ENST00000420887.2_1_3:180538532-180538697:+|nuORF 3.2813086475875832 0.45793521633868084 2 HPV 3 7 26.198 0 0 2.577 0 0 0 680.4025362604124 680.4025362604124 26.197887582883936 0 0 0 0 0 0 0 0 + HPV 2.577 + + 3 + NaN NaN 96562.1 NaN 3187 2072 5257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5262 33.65 NaN 65889 35 0 9331.5 0.261 + 9612 HSRRWFYRDK 10 37 484.2528594448712 1449.7367489348137 3 484.25335693359375 MULTI HCD FTMS 0 0 0 5257 16673.037109375 0.3854820926786808 -10 0.27410888671875 5 Unmodified _HSRRWFYRDK_ REV__ENSG00000166670|ENST00000279441|MMP10 0.15932191953741626 0.4744603884079788 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101821.5 NaN 3188 2072 5257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5264 33.656 NaN 657740 35 0 151390 0.327 + 9604 HSLPQEPVM 9 57 527.254951403515 1052.4953498738298 2 527.2551879882812 MULTI HCD FTMS 0 0 0 5263 315538.6875 0.9895582844127516 2 -0.049907684326171875 1 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 100.0907132914201 0.004261551473353346 2 [HS]{I|L}PQEPV{M(Oxidation (M))|F} 9 0 + 89.294 0 0 8.484 8.484 94.324 0 0 0 5.924778212679485 5.924778212679485 5.924778212679485 12.460762528683702 0 3.1861818737241734 0 1.0356668758921828 0.3252574989159953 + + [HS]{I|L}PQEPV{M(Oxidation (M))|F};[HS]{I|L}P[AG]EPV{M(Oxidation (M))|F};[HS]{I|L}G[PA]EPV{M(Oxidation (M))|F};[YT]PEQ[R{I|L}]{M(Oxidation (M))|F};[YT]PEQP[YR];[HS]{I|L}PQ[VP]E{M(Oxidation (M))|F};[VP][HT]QEPV{M(Oxidation (M))|F};[YT]PE[AG][R{I|L}]{M(Oxidation (M))|F};{[ET]|[MV]}MEQ[R{I|L}]{M(Oxidation (M))|F};[YT]PE[AG]P[YR] 8.484;7.3001;7.111;6.2512;5.6035;5.593;5.3742;5.3712;4.8866;4.7234 +;-;-;-;-;-;-;-;-;- + 427 NaN NaN 181037.5 NaN 3189 2073 5263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5265 33.66 NaN 506420 35 0 60485 0.261 -1 0 50 535.2228293756128 1068.4311058180256 2 535.222900390625 MULTI HCD FTMS 0 0 0 5263 253479 0.8590822161709147 -2 0.0465850830078125 2 NaN NaN 2 PD{I|L}{M(Oxidation (M))|F} 4 -1 49.227 0 0 4.6074 0 0 578.2203586128653 0 578.2203586128653 0 30.27433463803845 0 0 0 1.5 0 0.7059771852360797 0 PD{I|L}{M(Oxidation (M))|F} 4.6074 - 161 NaN NaN 162974.9 NaN 3190 2073 5263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5266 33.664 NaN 179650 35 0 16643 0.261 -1 LPQHPDVEM 9 50 541.2526278028565 1080.490702672513 2 541.2528686523438 MULTI HCD FTMS 0 0 0 5263 67504.4375 0.3982060521866343 6 -0.12657928466796875 3 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 31.26834338654808 0.10542797264966089 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}A[DP]VE{M(Oxidation (M))|F} 10 -1 + 58.874 0 0 5.4488 5.4488 84.55 0 0 0 9.852773696109551 27.21848749616356 9.852773696109551 3.521825181113627 0 1.274227503252014 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}A[DP]VE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][DP]VE{M(Oxidation (M))|F};[DP][{I|L}P]HQVE{M(Oxidation (M))|F};[DP][{I|L}P]H[AG]VE{M(Oxidation (M))|F} 5.4488;5.1229;3.6602;2.808 -;-;-;- 190 NaN NaN 135909.6 NaN 3191 2073 5263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5267 33.667 NaN 62900 35 0 7312.3 0.261 + 25160 SAIKEEQEL 9 31 523.7719070769313 1045.5292612206624 2 523.771484375 MULTI HCD FTMS 0 0 0 5263 39945.921875 0.07686727501684198 13 -0.2765960693359375 4 Unmodified _SAIKEEQEL_ ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1 14.405379775768559 0.2358970535022398 2 QE{I|L} 3 6 26.198 0 0 2.5057 0 0 657.3320179669937 0 657.3320179669937 0 12.685690803236296 0 0 0 0 0 0 0 + QE{I|L} 2.5057 + + 7 NaN NaN 112316.8 NaN 3192 2073 5263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5268 33.67 NaN 85309 35 0 10103 0.261 -1 FPDSEPPRM 9 37 546.2449526635525 1090.4753523939048 2 546.2446899414062 MULTI HCD FTMS 0 0 0 5263 25597.71875 0.45604751066729615 -10 0.26743316650390625 5 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 17.11289562659939 0.2125047172822487 2 RDPE 4 -1 30.918 0 0 2.8352 0 0 575.2225208966812 0 575.2225208966812 0 19.948500216800937 0 0 0 0.5 0 0 0 RDPE 2.8352 - 17 NaN NaN 95428.9 NaN 3193 2073 5263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5269 33.674 NaN 53976 35 0 6289.9 0.261 -1 MGMGRMEM 8 26 487.682250414114 973.349947895028 2 487.68170166015625 MULTI HCD FTMS 0 0 0 5263 19016.017578125 0.7029748014440433 6 -0.12657928466796875 6 2 Oxidation (M) _M(Oxidation (M))GM(Oxidation (M))GRMEM_ ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 2.302733041254933 0.5385759549224092 2 D 1 -1 2.4743 0 0 0.2542 0 0 427.20707787725297 428.0938814752563 855.3009593525093 0 0 0 0 0 0 0 0 0 D 0.2542 - 2 + NaN NaN 80846.7 NaN 3194 2073 5263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5271 33.679 NaN 124200 35 0 23757 0.327 + 26453 STPSPTVAAL 10 31 472.2584724262309 942.5023919192619 2 472.25823974609375 MULTI HCD FTMS 0 0 0 5270 68821.2578125 0.7748504195956619 2 -0.0432891845703125 1 Unmodified _STPSPTVAAL_ REV__ENSG00000214575|ENST00000684509|CPEB1;REV__nc|ENSG00000214575|Q9BZB8-2|CPEB1;REV__nc|ENSG00000214575|Q9BZB8-3|CPEB1;REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1;REV__nc|ENSG00000214575|Q9BZB8|CPEB1 13.042465956692817 0.38911719078024076 2 {[MG]|[TS]}SP 4 -1 22.435 0 0 2.3804 0 0 0 567.3163546197874 567.3163546197874 16.95046257204389 0 0 0 0 0.4247425010840047 0 0.5 0 {[MG]|[TS]}SP 2.3804 - 7 + NaN NaN 98832.3 NaN 3195 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5272 33.683 NaN 109610 35 0 33585 0.261 -1 NADPQAVTM 9 29 481.71613286382154 961.4177127944431 2 481.7158508300781 MULTI HCD FTMS 0 0 0 5270 49545.91796875 0.04280495603761056 69 -1.5929336547851562 2 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 19.361941925380144 0.1930734562688509 2 AVT{M(Oxidation (M))|F} 4 -1 45.433 0 0 4.7256 0 0 525.2193007844807 0 525.2193007844807 0 45.43305028184122 0 0 0 1.5 0 0 0 AVT{M(Oxidation (M))|F} 4.7256 + + 28 + NaN NaN 102927.1 NaN 3196 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5273 33.687 NaN 99070 35 0 22426 0.261 + 33532 YIGTSNWSGN 10 38 549.7462673367011 NaN 0 549.7604370117188 PEAK HCD FTMS 0 0 0 5270 2628.919677734375 0.531713370429303 -1 0.02329254150390625 3 Unmodified _YIGTSNWSGN_ ENSG00000105223|ENST00000409735|PLD3 6.723162845929126 0.3344301934401713 2 YN 2 8 12.391 0 0 1.129 0 0 113.0566083044583 704.2950278174658 817.3516361219241 0 0 0 0 0 0 0 0 0.3807196863200844 YN 1.129 - 21 + NaN NaN 98550 NaN 3197 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5274 33.69 NaN 63176 35 0 5402.4 0.261 + 4225 EVDPATVDMK 10 34 552.765959990644 1103.5173670480879 2 553.267578125 MULTI HCD FTMS 0 0 0 5270 13586.01171875 0.20227170000583897 24 -0.5658493041992188 4 Unmodified _EVDPATVDMK_ REV__ENSG00000185567|ENST00000333244|AHNAK2;REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2 2.9952420565917617 0.4594494122822477 2 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.8271 0 0 663.3280662541301 0 663.3280662541301 0 28.723637474483468 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8271 - 10 NaN NaN 96334.2 NaN 3198 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5275 33.694 NaN 78311 35 0 12049 0.261 -1 VVDPNDPQM 9 31 515.7289458788813 1029.4433388245625 2 515.7293701171875 MULTI HCD FTMS 0 0 0 5270 13075.4541015625 0.3744128749619415 -7 0.16986083984375 5 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 8.155526934196011 0.2891920862272901 2 C 1 -1 3.0989 0 0 0.30103 0 0 514.685112361475 408.7249849908813 923.4100973523564 0 0 0 0 0 0 0 0 0 C 0.30103 - 2 + NaN NaN 95460.8 NaN 3199 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5276 33.697 NaN 36223 35 0 4629.7 0.262 + -1 FCKNSSIQKL 10 27 408.8851191927734 1223.6335281785202 3 408.8849182128906 MULTI HCD FTMS 0 0 0 5270 15563.662109375 0.7902169364323497 -12 0.3173980712890625 6 Carbamidomethyl (C) _FC(Carbamidomethyl (C))KNSSIQKL_ REV__ENSG00000139684|ENST00000378720|ESD;REV__ENST00000495654.1_1_13:47359843-47367566:-|nuORF 5.783430956126388 0.4446910851847804 2 {I|L}Q[K{I|L}] 4 -1 3.9009 0 0 0.3188 0 0 723.3012355533234 0 723.3012355533234 0 3.90092514408778 0 0 0 0 0 0 0 {I|L}Q[K{I|L}] 0.3188 + + 13 + NaN NaN 82912.2 NaN 3200 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5277 33.7 NaN 41189 35 0 6869.7 0.261 + 19226 NKHKCKMV 8 32 494.2644971412697 986.5144413493394 2 494.26593017578125 MULTI HCD FTMS 0 0 0 5270 11931.314453125 0.7274322819908969 4 -0.08326339721679688 7 Unmodified _NKHKCKMV_ REV__ENSG00000006837|ENST00000265334|CDKL3;REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85756.4 NaN 3201 2074 5270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5279 33.706 NaN 195690 35 0 19546 0.327 + -1 TWKDQKEM 8 51 541.2526278028565 1080.490702672513 2 541.2691040039062 MULTI HCD FTMS 0 0 0 5278 30682.818359375 0.1809967525297326 8 -0.16004562377929688 1 Oxidation (M) _TWKDQKEM(Oxidation (M))_ REV__ENSG00000121316|ENST00000240617|PLBD1 24.020572477871973 0.4170589785259073 2 EMK{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6 -1 38.889 0 0 3.5992 0 0 293.17424987293407 0 293.17424987293407 0 9.579569145996345 0 0 0 0 0 0.7742275032520141 0 EMK{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3.5992 - 156 NaN NaN 124347.6 NaN 3202 2075 5278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5280 33.71 NaN 24656 35 0 4127.6 0.261 + -1 YVNYMRIY 8 20 569.2742878207926 1136.534022708385 2 569.2734375 MULTI HCD FTMS 0 0 0 5278 22533.9765625 0.9521190585791013 -1 0.026615142822265625 2 Oxidation (M) _YVNYM(Oxidation (M))RIY_ REV__IFNGR1|p.V171M|1|0.21|ENSG00000027697|chr6:137204367-137204367|C/T|missense_variant 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103879.8 NaN 3203 2075 5278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5281 33.714 NaN 89823 35 0 19855 0.261 + 4297 EVNYVPQK 8 25 488.7589635063974 975.5033740795948 2 488.7585754394531 MULTI HCD FTMS 0 0 0 5278 18782.96875 0.9831610232771925 4 -0.07667160034179688 3 Unmodified _EVNYVPQK_ REV__ENSG00000133302|ENST00000265140|SLF1 4.75600775471527 0.5349361699807423 2 K 1 -1 13.099 0 0 1.3428 0 0 829.3985594817417 0 829.3985594817417 0 7.614393726401687 0 0 0 0 0 0 0 K 1.3428 + + 4 + NaN NaN 96825.1 NaN 3204 2075 5278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5282 33.717 NaN 16467 35 0 3346.7 0.261 + -1 LMKQFHGSTD 10 13 590.2766756015552 1178.5387982699103 2 590.27685546875 MULTI HCD FTMS 0 0 0 5278 6358.2568359375 0.29741434244203124 7 -0.13006591796875 4 Oxidation (M) _LM(Oxidation (M))KQFHGSTD_ REV__ENSG00000197043|ENST00000354546|ANXA6;REV__nc|ENSG00000197043|P08133-2|ANXA6 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95353.9 NaN 3205 2075 5278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5284 33.722 NaN 521950 35 0 62195 0.327 + 15801 LPHSGEAQL 9 71 476.2484073749024 950.4822618166048 2 476.2482604980469 MULTI HCD FTMS 0 0 0 5283 260137.234375 0.47330649077141235 3 -0.05999755859375 1 Unmodified _LPHSGEAQL_ ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1 78.7280429016045 0.006263961847259105 2 {[QN]|[E{I|L}]|[KN]}AN[YT]Q{I|L} 8 6 + 50.002 0 0 5.2606 5.2606 88.084 0 0 0 9.876954943324549 36.02211747517542 9.876954943324549 9.262137858390815 0 0.7614393726401688 0 0.8754223615525999 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}AN[YT]Q{I|L};{[QN]|[E{I|L}]|[KN]}AGG[YT]Q{I|L};{[QN]|[E{I|L}]|[KN]}AN[YT][AG]{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}[HQ]P{I|L} 5.2606;4.2862;4.2862;0.76643 -;-;-;- 367 NaN NaN 169319.4 NaN 3206 2076 5283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5285 33.727 NaN 112400 35 0 15222 0.261 + 29 AAGVGDMVM 9 37 441.68865066692535 881.3627484006507 2 441.68841552734375 MULTI HCD FTMS 0 0 0 5283 73519.1875 0.7929634769114718 5 -0.09663772583007812 2 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 77.98433622928108 0.006504613272346738 2 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 + 68.409 0 0 7.7618 7.7618 89.526 0 0 0 4.547509540478032 52.92464714820923 4.547509540478032 6.023050448947629 0 2.3807196863200843 0 0.4247425010840047 0 [QA]VGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.7618;7.0784 -;+ + 76 NaN NaN 109397.7 NaN 3207 2076 5283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5286 33.73 NaN 97144 35 0 7154.5 0.261 -1 KYMEDYHQF 9 47 426.18163007579057 1275.5230608275717 3 426.1814880371094 MULTI HCD FTMS 0 0 0 5283 32643.1328125 0.4800587561481979 10 -0.21001434326171875 3 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 14.405379775768559 0.2358970535022398 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.214 0 0 1110.4447660051092 0 1110.4447660051092 0 11.532125137753438 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.214 + + 12 + NaN NaN 98010.6 NaN 3208 2076 5283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5287 33.734 NaN 95437 35 0 20283 0.261 + 23305 RILDGKRIQY 10 35 421.25074840786334 1260.73041582379 3 421.2505187988281 MULTI HCD FTMS 0 0 0 5283 32661.009765625 0.46684188739225957 4 -0.07666015625 4 Unmodified _RILDGKRIQY_ ENSG00000142669|ENST00000270792|SH3BGRL3 1.5922808571145555 0.4668755089467872 2 P 1 10 6.9897 0 0 0.55442 0 0 148.17235322524203 1012.4843766481627 1160.6567298734046 0 0 0 0 0 0 0 0 0 P 0.55442 - 5 + NaN NaN 107729.9 NaN 3209 2076 5283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5288 33.737 NaN 105230 35 0 18561 0.261 + 4298 EVPASAFQK 9 31 488.7589635063974 975.5033740795948 2 488.7590637207031 MULTI HCD FTMS 0 0 0 5283 7926.66552734375 0.4149071797310704 5 -0.09663772583007812 5 Unmodified _EVPASAFQK_ ENSG00000170955|ENST00000303927|CAVIN3;ENST00000524852.1_1_11:6340395-6340857:-|nuORF;ENST00000532354.1_1_11:6340395-6341123:-|nuORF 5.731851221503515 0.3075653528928475 2 {NN|[MP]|[D{I|L}]|[EV]}[PA]S 5 4 6.8348 0 0 0.70065 0 0 0 489.2486971490844 489.2486971490844 6.8348435778082 0 0 0 0 0.4247425010840047 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}[PA]S 0.70065 + + 4 + NaN NaN 103763.7 NaN 3210 2076 5283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5289 33.74 NaN 54849 35 0 9239.9 0.261 + 642 APIQSEPRV 9 33 498.77732349618617 995.5400940591724 2 498.7772216796875 MULTI HCD FTMS 0 0 0 5283 17245.349609375 0.11540378114128312 9 -0.18334579467773438 6 Unmodified _APIQSEPRV_ BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379|BAG6 7.608950283845883 0.29333554423920943 2 [PA]{I|L}Q 4 5 16.198 0 0 1.627 0 0 0 583.2830294244749 583.2830294244749 5.713337517843655 0 0 0 0 0 0 0 0 + [PA]{I|L}Q 1.627 + + 5 + NaN NaN 94886.9 NaN 3211 2076 5283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5291 33.746 NaN 164290 35 0 26630 0.327 + -1 RTSEYPMI 8 46 506.7419529112571 1011.4693528893142 2 506.7416687011719 MULTI HCD FTMS 0 0 0 5290 62437.39453125 0.8470487740665278 -1 0.0233154296875 1 Oxidation (M) _RTSEYPM(Oxidation (M))I_ REV__ENSG00000105426|ENST00000262963|PTPRS;REV__ENSG00000153707|ENST00000381196|PTPRD;REV__ENST00000588552.5_1_19:5159112-5286160:-|nuORF;REV__nc|ENSG00000105426|Q13332-2|PTPRS;REV__nc|ENSG00000105426|Q13332-3|PTPRS;REV__nc|ENSG00000105426|Q13332-4|PTPRS;REV__nc|ENSG00000105426|Q13332-5|PTPRS;REV__nc|ENSG00000105426|Q13332-6|PTPRS;REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-3|PTPRD;REV__nc|ENSG00000153707|P23468-4|PTPRD;REV__nc|ENSG00000153707|P23468-5|PTPRD;REV__nc|ENSG00000153707|P23468-6|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD 12.531546534597751 0.5015908124873912 2 S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3 -1 2.1915 0 0 0.21667 0 0 645.3093014750549 0 645.3093014750549 0 2.19151233673003 0 0 0 0 0 0 0 S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 0.21667 - 10 + NaN NaN 106827.3 NaN 3212 2077 5290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5292 33.75 NaN 56101 35 0 6505.4 0.261 + 29753 VDVHRVSLT 9 34 513.2905462992097 1024.5665396652194 2 513.2906494140625 MULTI HCD FTMS 0 0 0 5290 27923.162109375 0.13976387289972814 10 -0.21004867553710938 2 Unmodified _VDVHRVSLT_ ENST00000425128.6_1_3:27417698-27417842:-|nuORF 1.844237919475145 0.33703635659052655 2 VTY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 6 16.823 0 0 1.6419 0 0 386.26317031074376 0 386.26317031074376 0 14.604093769761873 0 0 0 0 0 0 0 VTY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.6419 - 9 NaN NaN 115306.2 NaN 3213 2077 5290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5293 33.754 NaN 46861 35 0 13711 0.261 + -1 VVSPSPCVLC 10 18 559.2727253845823 1116.5308978359644 2 559.273193359375 MULTI HCD FTMS 0 0 0 5290 24656.240234375 0.6456764619534585 2 -0.03668212890625 3 2 Carbamidomethyl (C) _VVSPSPC(Carbamidomethyl (C))VLC(Carbamidomethyl (C))_ REV__ENST00000590168.5_1_17:74467717-74469013:-|nuORF 3.2813086475875832 0.45793521633868084 2 VW 2 -1 25.969 0 0 2.3259 0 0 0 828.3417452447874 828.3417452447874 25.969100130080562 0 0 0 0 0.5 0 0 0 VW 2.3259 - 2 + NaN NaN 99982.2 NaN 3214 2077 5290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5294 33.757 NaN 85964 35 0 22722 0.261 + -1 LMIEIDEML 9 26 561.7747660680647 1121.5349792029292 2 561.7752685546875 MULTI HCD FTMS 0 0 0 5290 34962.67578125 1 0 0 4 Oxidation (M) _LM(Oxidation (M))IEIDEML_ REV__ENSG00000277481|ENST00000620267|PKD1L3 3.944395688203298 0.32111559684428237 2 E{I|L} 2 -1 20.969 0 0 1.8697 0 0 861.4028797834 0 861.4028797834 0 12.016675202793719 0 0 0 0 0 0 0 E{I|L} 1.8697 + + 11 NaN NaN 95554.3 NaN 3215 2077 5290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5296 33.762 NaN 127290 35 0 17493 0.327 -1 RYVRKFVLM 9 41 409.90584316911765 1226.695700107553 3 409.9057922363281 MULTI HCD FTMS 0 0 0 5295 40147.3671875 0.1945303452716093 -9 0.21646881103515625 1 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 2.498486711656943 0.33207666356665205 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.117 0 0 948.5659306023623 0 948.5659306023623 0 11.989700043360187 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.117 + + 10 NaN NaN 106427.8 NaN 3216 2078 5295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5297 33.767 NaN 40877 35 0 6546.4 0.261 + 3010 EAANYQDTIGR 11 15 619.2943660302975 1236.574179127395 2 619.2938842773438 MULTI HCD FTMS 0 0 0 5295 28581.498046875 0.23180273406240143 -5 0.10655593872070312 2 Unmodified _EAANYQDTIGR_ ENSG00000026025|ENST00000544301|VIM 7.945399516374404 0.3840748433199446 2 [RD]NYQD[{I|L}T]{[NV]|[RG]} 10 3 + 24.895 0 0 2.0132 2.0132 83.608 0 0 0 24.89454989793387 4.259687322722812 4.259687322722812 9.164539485499251 0 0 0 0 0 [RD]NYQD[{I|L}T]{[NV]|[RG]};[RD]NY[AG]D[{I|L}T]{[NV]|[RG]};[RD]GGYQD[{I|L}T]{[NV]|[RG]} 2.0132;1.2721;1.2721 -;-;- 27 + NaN NaN 86514.6 NaN 3217 2078 5295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5298 33.77 NaN 24783 35 0 4887 0.261 + 24366 RYIHPQQEAF 10 13 644.8255560105686 1287.636559087937 2 644.8256225585938 MULTI HCD FTMS 0 0 0 5295 11815.279296875 0.6631711109581226 3 -0.05666351318359375 3 Unmodified _RYIHPQQEAF_ ENSG00000071894|ENST00000616140|CPSF1 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94860.8 NaN 3218 2078 5295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5299 33.774 NaN 37172 35 0 7318 0.263 + 32991 YASPADRQL 9 20 510.7592358494242 1019.5039187656485 2 510.7590637207031 MULTI HCD FTMS 0 0 0 5295 9707.7509765625 0.4290708292486862 -3 0.05664825439453125 4 Unmodified _YASPADRQL_ ENSG00000007520|ENST00000007390|TSR3 10.073929032068715 0.27331982688540024 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 6 37.447 0 0 3.6731 0 0 0 695.3478223980264 695.3478223980264 30.457574905606748 0 0 0 0 0.5 2 0.5 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3.6731 + + 3 + NaN NaN 98075.7 NaN 3219 2078 5295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5300 33.777 NaN 45127 35 0 8449.7 0.261 + 3803 EPEEESERHIL 11 37 456.5526764482268 1366.6361999448804 3 456.55267333984375 MULTI HCD FTMS 0 0 0 5295 9895.6162109375 0.030053419583161947 30 -0.715911865234375 5 Unmodified _EPEEESERHIL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 2.2527281973983926 0.4090409658946738 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99258.4 NaN 3220 2078 5295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5302 33.782 NaN 85266 35 0 17734 0.327 + -1 KVLCCRMLAQR 11 25 484.2528594448712 1449.7367489348137 3 484.252685546875 MULTI HCD FTMS 0 0 0 5301 37598.5703125 0.8692822711729886 -3 0.05999755859375 1 2 Carbamidomethyl (C),Oxidation (M) _KVLC(Carbamidomethyl (C))C(Carbamidomethyl (C))RM(Oxidation (M))LAQR_ REV__ENSG00000115041|ENST00000295225|KCNIP3;REV__ENST00000475491.1_1_2:95963129-95976459:+|nuORF;REV__nc|ENSG00000115041|Q9Y2W7-2|KCNIP3 0.09484139111097674 0.41850472438158626 2 {I|L} 1 -1 5.4846 0 0 0.37831 0 0 64.02027109474632 1269.6078326134373 1333.6281037081835 0 0 0 0 0 0 0 0 0 {I|L} 0.37831 + + 7 + NaN NaN 119912.9 NaN 3221 2079 5301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5303 33.787 NaN 214780 35 0 95624 0.261 + 840 AWAPKPYHKF 10 31 415.5574913475435 1243.6506446428305 3 415.5571594238281 MULTI HCD FTMS 0 0 0 5301 11887.615234375 0.07283124060421008 21 -0.5200424194335938 2 Unmodified _AWAPKPYHKF_ CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|5|fusion;ENSG00000071054|ENST00000324219|MAP4K4;ENSG00000141503|ENST00000355280|MINK1;ENSG00000154310|ENST00000436636|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant 6.630372943996041 0.44020808660041416 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A 3 7 29.437 0 0 2.367 0 0 0 912.4721527817554 912.4721527817554 29.436974992327123 0 0 0 0 0.5 1.6989700043360187 0 0 + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A 2.367 + + 6 NaN NaN 112037.3 NaN 3222 2079 5301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5304 33.79 NaN 20915 35 0 5989.9 0.261 -1 KYMEDYHQF 9 17 638.7690305911782 1275.5235082491563 2 638.7695922851562 MULTI HCD FTMS 0 0 0 5301 11301.787109375 0.4100968539029936 13 -0.30633544921875 3 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 3.2813086475875832 0.32614229037259 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114249.7 NaN 3223 2079 5301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5305 33.794 NaN 17600 35 0 3166.2 0.261 + 28310 TLVKFHRSR 9 20 572.3397014276106 NaN 0 572.3394165039062 PEAK HCD FTMS 0 0 0 5301 5553.76708984375 1 0 0 4 Unmodified _TLVKFHRSR_ ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81014 NaN 3224 2079 5301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5307 33.799 NaN 178010 35 0 36132 0.327 -1 HSLPQEPVM 9 33 527.254951403515 1052.4953498738298 2 527.25537109375 MULTI HCD FTMS 0 0 0 5306 66742.546875 0.20931075268848817 9 -0.20328903198242188 1 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 38.175570920033316 0.07371992880350783 2 [HS]{I|L}[QP]EPV{M(Oxidation (M))|F} 9 -1 + 46.048 0 0 4.3751 4.3751 88.718 0 0 0 2.120215259895417 33.600840614449794 2.120215259895417 18.15552802072581 0 2.242992819099939 0 0.3494850021680094 0 [HS]{I|L}[QP]EPV{M(Oxidation (M))|F};[YT]PE[QP][YR] 4.3751;2.6501 +;- + 43 NaN NaN 122629.7 NaN 3225 2080 5306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5308 33.803 NaN 97174 35 0 16012 0.261 -1 FPDSEPPRM 9 39 546.2449526635525 1090.4753523939048 2 546.2450561523438 MULTI HCD FTMS 0 0 0 5306 37761.0625 0.672748955540313 -3 0.0533447265625 2 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 24.990960013464015 0.14443998892849796 2 {M(Oxidation (M))|F}RESDPE 7 -1 47.071 0 0 4.3165 0 0 212.0798054425797 0 212.0798054425797 0 41.586163651460524 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}RESDPE 4.3165 - 94 NaN NaN 96722 NaN 3226 2080 5306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5309 33.807 NaN 40691 35 0 4956.9 0.261 + 14783 LIFSTDDFF 9 22 552.765959990644 1103.5173670480879 2 553.2675170898438 MULTI HCD FTMS 0 0 0 5306 12627.3466796875 0.18799887210008057 30 -0.7288970947265625 3 Unmodified _LIFSTDDFF_ ENSG00000139597|ENST00000380130|N4BP2L1;ENST00000472298.1_1_13:32981593-33002081:-|nuORF;nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 3.944395688203298 0.32111559684428237 2 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 31.198 0 0 2.8271 0 0 663.3264670153878 0 663.3264670153878 0 21.73393743112328 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8271 - 7 NaN NaN 92939.9 NaN 3227 2080 5306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5310 33.81 NaN 39156 35 0 7730 0.261 + 5029 FDFRCQEN 8 21 529.7217540124323 1057.4289550916644 2 529.7213745117188 MULTI HCD FTMS 0 0 0 5306 12995.943359375 0.33620175936507557 -14 0.3097686767578125 4 Unmodified _FDFRCQEN_ REV__ENSG00000087116|ENST00000251582|ADAMTS2;REV__nc|ENSG00000087116|O95450-2|ADAMTS2 4.3292370932331545 0.5355693454741696 2 P{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 4 -1 18.812 0 0 1.7791 0 0 551.2172984527957 0 551.2172984527957 0 18.812281309285623 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.7791 - 9 + NaN NaN 100595.6 NaN 3228 2080 5306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5311 33.814 NaN 30619 35 0 9368.4 0.261 + 8194 GQNCLSSEF 9 20 492.7070724710901 NaN 0 492.7071533203125 PEAK HCD FTMS 0 0 0 5306 5045.744140625 0.8044187558139988 1 -0.019977569580078125 5 Unmodified _GQNCLSSEF_ ENST00000491511.6_1_3:101500962-101501088:+|nuORF 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100421.7 NaN 3229 2080 5306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5313 33.819 NaN 67230 35 0 18239 0.327 + -1 IYNCTLSLD 9 28 549.7602808749274 1097.5060088166547 2 549.7603149414062 MULTI HCD FTMS 0 0 0 5312 35653.765625 0.49722763204988313 4 -0.08670806884765625 1 Carbamidomethyl (C) _IYNC(Carbamidomethyl (C))TLSLD_ REV__ENSG00000164287|ENST00000381375|CDC20B;REV__nc|ENSG00000164287|Q86Y33-2|CDC20B;REV__nc|ENSG00000164287|Q86Y33-3|CDC20B;REV__nc|ENSG00000164287|Q86Y33-4|CDC20B 20.453626601364224 0.18364154288633264 2 {I|L}YN 3 -1 50.234 0 0 4.5771 0 0 0 704.2899263971311 704.2899263971311 45.62977812912628 0 0 0 0 0.3807196863200844 2 0 0.5 {I|L}YN 4.5771 + + 7 + NaN NaN 93523.9 NaN 3230 2081 5312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5314 33.823 NaN 44395 35 0 4646.9 0.261 + 3259 EEAEIIRKY 9 34 575.8088588275194 1149.6031647218388 2 575.8086547851562 MULTI HCD FTMS 0 0 0 5312 21810.2421875 0.6767071854314488 -2 0.036640167236328125 2 Unmodified _EEAEIIRKY_ ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF 8.745405648335112 0.2847203663274469 2 {I|L}{I|L}EA[HC] 6 8 22.396 0 0 1.9481 0 0 465.26997573066564 0 465.26997573066564 0 14.948500216800936 0 0 0 0 0 0 0 {I|L}{I|L}EA[HC] 1.9481 - 12 NaN NaN 86393.8 NaN 3231 2081 5312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5315 33.827 NaN 89696 35 0 23433 0.262 -1 NADPQAVTM 9 27 481.71613286382154 961.4177127944431 2 481.7159729003906 MULTI HCD FTMS 0 0 0 5312 38050.21875 0.03287330233426103 76 -1.8272132873535156 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 21.590151480376914 0.17382222009858564 2 VAMKT{M(Oxidation (M))|F} 6 -1 49.385 0 0 5.1367 0 0 266.09324122557535 0 266.09324122557535 0 49.38547520912806 0 0 0 1 0 0 0 VAMKT{M(Oxidation (M))|F} 5.1367 - 40 NaN NaN 93462.3 NaN 3232 2081 5312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5316 33.83 NaN 61325 35 0 5964.5 0.261 -1 MPVHAAVQM 9 37 500.24131771201434 998.4680824908287 2 500.2406921386719 MULTI HCD FTMS 0 0 0 5312 20113.87109375 0.3192183527129789 -8 0.16321945190429688 4 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 36.04419817259434 0.08350412372117409 2 CVQ{M(Oxidation (M))|F} 4 -1 46.67 0 0 4.6742 0 0 503.2755603734443 0 503.2755603734443 0 46.67017533604145 0 0 0 1.5 0 0 0.4247425010840047 CVQ{M(Oxidation (M))|F} 4.6742 - 40 + NaN NaN 104747.1 NaN 3233 2081 5312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5318 33.836 NaN 99439 35 0 8784.1 0.327 + 7250 FSYEKFNF 8 38 541.2526278028565 1080.490702672513 2 541.2691040039062 MULTI HCD FTMS 0 0 0 5317 13429.2705078125 0.07921874458493804 15 -0.38585662841796875 1 Unmodified _FSYEKFNF_ ENSG00000107518|ENST00000355044|ATRNL1;ENST00000424738.1_1_10:117226695-117357303:+|nuORF 5.760428011301431 0.5334459684533844 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[TV]|[{I|L}S]}HEK{M(Oxidation (M))|F} 9 6 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} + + 23.275 20.458 8.7401 2.1541 2.1541 59.792 0 0 0 0 -1.4174107352448573 -1.4174107352448573 0 0 0 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[TV]|[{I|L}S]}HEK{M(Oxidation (M))|F} 2.1541 - 38 + NaN NaN 109147.1 NaN 3234 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5319 33.84 NaN 134390 35 0 34776 0.261 + 16148 LPTSSGALLS 10 43 473.2663383922715 944.518123851343 2 473.2662658691406 MULTI HCD FTMS 0 0 0 5317 75466.1171875 0.4941615285205096 -4 0.07341766357421875 2 Unmodified _LPTSSGALLS_ REV__ENSG00000275023|ENST00000621332|MLLT6 30.636539890814138 0.2266618088935899 2 {I|L}PT 3 -1 53.232 0 0 5.6359 0 0 0 630.3112887018186 630.3112887018186 40.27310937020445 0 0 0 0 0.5 1.3979400086720375 0.805462187404089 0 {I|L}PT 5.6359 + + 25 + NaN NaN 111513.4 NaN 3235 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5320 33.844 NaN 86029 35 0 17050 0.261 -1 RRCHSQPM 8 29 515.7385382372642 NaN 0 515.72900390625 PEAK HCD FTMS 0 0 0 5317 2025.7900390625 0.4859697460313072 -1 0.016754150390625 3 Oxidation (M) _RRCHSQPM(Oxidation (M))_ ENST00000571409.1_3_17:7154762-7155739:-|nuORF 4.75600775471527 0.38822285293237185 2 P 1 -1 0.088644 0 0 0.0086107 0 0 781.5353365069517 147.84786401920158 929.3832005261532 0 0 0 0 0 0 0 0 0 P 0.0086107 + + 2 + NaN NaN 113708.3 NaN 3236 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5321 33.847 NaN 59265 35 0 9034.8 0.261 + -1 SFSSRNMLALS 11 28 614.8012775867693 1227.5880022403385 2 614.80078125 MULTI HCD FTMS 0 0 0 5317 18119.708984375 0.6738655505705451 1 -0.029979705810546875 4 Oxidation (M) _SFSSRNM(Oxidation (M))LALS_ REV__ENSG00000141750|ENST00000333461|STAC2;REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2 9.5439744041441 0.373925449867384 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SS 4 -1 44.693 0 0 3.6407 0 0 0 816.4006499922452 816.4006499922452 39.20818753952375 0 0 0 0 0.8494850021680094 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SS 3.6407 + + 8 + NaN NaN 113904.2 NaN 3237 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5322 33.85 NaN 100300 35 0 14955 0.263 + 28664 TSAQVDDLK 9 30 488.7504324857959 975.4863120383918 2 488.7498779296875 MULTI HCD FTMS 0 0 0 5317 18808.51953125 0.864237375263939 -1 0.016754150390625 5 Unmodified _TSAQVDDLK_ DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 5.731851221503515 0.3075653528928475 2 {[MG]|[TS]}A 3 6 10.19 0 0 1.0446 0 0 0 713.3467501275999 713.3467501275999 8.595756168365016 0 0 0 0 0.4247425010840047 0 0 0 + {[MG]|[TS]}A 1.0446 + + 4 + NaN NaN 111520.7 NaN 3238 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5323 33.854 NaN 78301 35 0 14912 0.261 + 9335 HPSAHDVIL 9 28 494.76416344665756 987.5137739601151 2 494.76409912109375 MULTI HCD FTMS 0 0 0 5317 20691.275390625 0.10989222361443432 -11 0.22655868530273438 6 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 11.640296217721598 0.25978676193971967 2 {I|L}{I|L} 2 7 25.969 0 0 2.6297 0 0 743.3341344211168 0 743.3341344211168 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6297 + + 5 NaN NaN 91381.5 NaN 3239 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5324 33.857 NaN 23066 35 0 3024.2 0.261 -1 TAGLWWCRM 9 20 570.2612499767401 1138.5079470202802 2 570.26123046875 MULTI HCD FTMS 0 0 0 5317 11507.51953125 0.8560275272451644 2 -0.046619415283203125 7 Oxidation (M) _TAGLWWCRM(Oxidation (M))_ ENST00000314358.9_1_5:137721996-137722053:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89374.4 NaN 3240 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5325 33.86 NaN 13661 35 0 3848.2 0.261 + -1 SMACCMKRG 9 15 566.7220458984375 NaN 0 566.7220458984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C),2 Oxidation (M) _SM(Oxidation (M))AC(Carbamidomethyl (C))C(Carbamidomethyl (C))M(Oxidation (M))KRG_ REV__ENST00000286800.7_1_21:30693611-30693791:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91153.5 NaN 3241 2082 5317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5327 33.866 NaN 207330 35 0 32105 0.327 + 148 AEGLGTYKL 9 50 476.2591196677055 NaN 0 476.2484130859375 PEAK HCD FTMS 0 0 0 5326 9439.9736328125 1 0 0 1 Unmodified _AEGLGTYKL_ REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1 7.910154910731844 0.25691533546754686 2 QA 2 -1 13.711 0 0 1.4425 0 0 131.11810548105558 617.2693575494749 748.3874630305304 0 0 0 0 0 0 0 0 0.4247425010840047 QA 1.4425 - 17 + NaN NaN 129456 NaN 3242 2083 5326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5328 33.87 NaN 189850 35 0 43736 0.261 + 16047 LPSGATLSSL 10 50 473.2663383922715 944.518123851343 2 473.26617431640625 MULTI HCD FTMS 0 0 0 5326 87911.1171875 0.5756529375346782 -3 0.06671142578125 2 Unmodified _LPSGATLSSL_ ENST00000564147.1_1_16:68270758-68271348:-|nuORF 58.678817012210395 0.04622659334010173 2 {I|L}PT 3 7 53.416 0 0 5.6554 0 0 0 630.3104952447874 630.3104952447874 26.409328277719766 0 0 0 0 0.5 1.5228787452803376 0.8494850021680094 0 {I|L}PT 5.6554 - 27 + NaN NaN 125474.5 NaN 3243 2083 5326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5329 33.874 NaN 91906 35 0 14766 0.261 + 30 AAGVGDMVM 9 35 441.68865066692535 881.3627484006507 2 441.6885070800781 MULTI HCD FTMS 0 0 0 5326 64460.55859375 0.6952588896083169 12 -0.2992897033691406 3 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 57.47134341890925 0.0211188941628804 2 AARGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 2 AA + + 60.495 0.85348 0.60072 6.8638 6.8638 65.396 0 0 0 0 57.880325230808154 0 0 0 2.3494850021680094 0 0 0 AARGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.8638 - 50 + NaN NaN 98654.8 NaN 3244 2083 5326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5330 33.877 NaN 10575 35 0 2556.1 0.261 -1 0 8 604.3306650567895 603.3233885901894 1 604.33056640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103536.7 NaN 3245 2083 5326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5332 33.882 NaN 232670 35 0 39265 0.327 -1 AQDIEETM 8 47 476.69873584556 NaN 0 476.6909484863281 PEAK HCD FTMS 0 0 0 5331 3601.895751953125 0.5425943097008887 1 -0.023334503173828125 1 Oxidation (M) _AQDIEETM(Oxidation (M))_ ENSG00000196935|ENST00000355086|SRGAP1;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1 8.593279151180031 0.38822285293237185 2 QA 2 -1 13.711 0 0 1.4412 0 0 131.9962219646987 617.2675875299436 749.2638094946424 0 0 0 0 0 0 0 0 0.4247425010840047 QA 1.4412 - 15 + NaN NaN 132629.3 NaN 3246 2084 5331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5333 33.887 NaN 129320 35 0 17983 0.261 -1 APHTTEPML 9 29 506.7419529112571 1011.4693528893142 2 506.74212646484375 MULTI HCD FTMS 0 0 0 5331 46948.64453125 0.6369226661816689 6 -0.14321517944335938 2 Oxidation (M) _APHTTEPM(Oxidation (M))L_ ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA 11.640296217721598 0.25978676193971967 2 P 1 -1 0.71334 0 0 0.070525 0 0 497.40234957075796 414.0029244240429 911.4052739948008 0 0 0 0 0 0 0 0 0 P 0.070525 + + 1 + NaN NaN 116396.6 NaN 3247 2084 5331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5334 33.89 NaN 198560 35 0 44724 0.261 + 10426 IPAEEENKL 9 26 521.7744944673776 1041.5344360015552 2 521.7742919921875 MULTI HCD FTMS 0 0 0 5331 41384.8046875 0.5272480143055795 -4 0.08335113525390625 3 Unmodified _IPAEEENKL_ ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2 11.494710602746466 0.2610445893512368 2 {I|L}PA 3 6 26.198 0 0 2.5153 0 0 0 757.3364351861936 757.3364351861936 26.197887582883936 0 0 0 0 0 0 0 0 + {I|L}PA 2.5153 + + 3 + NaN NaN 110043.5 NaN 3248 2084 5331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5335 33.894 NaN 74562 35 0 18193 0.261 + 9143 HPHPRGPLL 9 18 512.2953929150003 1022.5762328968007 2 512.2951049804688 MULTI HCD FTMS 0 0 0 5331 31266.58984375 0.8995270324031015 -2 0.046619415283203125 4 Unmodified _HPHPRGPLL_ REV__ENSG00000090565|ENST00000262305|RAB11FIP3;REV__ENST00000483002.1_1_16:524982-539001:+|nuORF;REV__nc|ENSG00000090565|O75154-2|RAB11FIP3;REV__nc|ENSG00000090565|O75154-3|RAB11FIP3 4.3292370932331545 0.3181982124262546 2 C{I|L} 2 -1 24.464 0 0 2.3924 0 0 788.4634266584 0 788.4634266584 0 17.47425010840047 0 0 0 0.5 0 0 0 C{I|L} 2.3924 - 4 NaN NaN 90352.2 NaN 3249 2084 5331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5336 33.897 NaN 70280 35 0 6413.9 0.262 + 23306 RILDGKRIQY 10 34 421.25074840786334 1260.73041582379 3 421.2501525878906 MULTI HCD FTMS 0 0 0 5331 5428.1005859375 0.0775868456204664 12 -0.302581787109375 5 Unmodified _RILDGKRIQY_ ENSG00000142669|ENST00000270792|SH3BGRL3 0.5631705045366581 0.4723227536457635 2 P 1 10 6.9897 0 0 0.55442 0 0 148.17519979857735 1012.4800343593025 1160.65523415788 0 0 0 0 0 0 0 0 0 P 0.55442 - 2 + NaN NaN 97311.4 NaN 3250 2084 5331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5337 33.9 NaN 18091 35 0 2687.7 0.261 + -1 QWVCFFCVM 9 20 638.7690305911782 1275.5235082491563 2 638.7677612304688 MULTI HCD FTMS 0 0 0 5331 5084.1845703125 0.18448481437221148 18 -0.459930419921875 6 2 Carbamidomethyl (C) _QWVC(Carbamidomethyl (C))FFC(Carbamidomethyl (C))VM_ REV__ENST00000565867.2_1_16:48395883-48396060:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87138.4 NaN 3251 2084 5331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5339 33.906 NaN 600720 35 0 80254 0.327 -1 RYVRKFVLM 9 61 409.90584316911765 1226.695700107553 3 409.90576171875 MULTI HCD FTMS 0 0 0 5338 195263.609375 0.9461317145231393 -2 0.039974212646484375 1 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 12.240655878213236 0.2545997876781172 2 {I|L}{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.2792 0 0 948.5648306401572 0 948.5648306401572 0 0.5115252244738144 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2792 + + 35 NaN NaN 179432.4 NaN 3252 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5340 33.91 NaN 157720 35 0 15808 0.261 + 3011 EAANYQDTIGR 11 42 619.2943660302975 1236.574179127395 2 619.2942504882812 MULTI HCD FTMS 0 0 0 5338 111172.2265625 0.9016331483650079 2 -0.050018310546875 2 Unmodified _EAANYQDTIGR_ ENSG00000026025|ENST00000544301|VIM 35.079672537005266 0.16863851843823818 2 {[CP]|[EA]}ANYQDT{I|L}{[NV]|[RG]} 11 0 + 59.284 0 0 4.7942 4.7942 85.741 0 0 0 41.01274818410506 7.367585652254185 7.367585652254185 9.128498242810998 0 0.7302046884880937 0 0 0 + + {[CP]|[EA]}ANYQDT{I|L}{[NV]|[RG]};{[CP]|[EA]}ANY[AG]DT{I|L}{[NV]|[RG]};{[CP]|[EA]}AGGYQDT{I|L}{[NV]|[RG]};{[CP]|[EA]}AGGY[AG]DT{I|L}{[NV]|[RG]} 4.7942;4.056;4.056;3.3202 +;-;-;- + 109 + NaN NaN 119504.7 NaN 3253 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5341 33.914 NaN 81226 35 0 14099 0.263 + 28698 TSLADDNLK 9 26 488.7504324857959 975.4863120383918 2 488.7508850097656 MULTI HCD FTMS 0 0 0 5338 8005.7724609375 0.36785924416354776 2 -0.050018310546875 3 Unmodified _TSLADDNLK_ ENSG00000151914|ENST00000680361|DST;ENST00000487754.2_1_6:56350034-56354383:-|nuORF;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST 5.731851221503515 0.3075653528928475 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97377 NaN 3254 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5342 33.917 NaN 28912 35 0 3794.9 0.261 -1 CCNWSAVYRR 10 25 452.8699333952826 NaN 0 452.8700256347656 PEAK HCD FTMS 0 0 0 5338 14989.91796875 0.6744810867995948 136 -3.3444976806640625 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))CNWSAVYRR_ ENST00000420886.6_1_12:123810111-123810699:-|nuORF 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86555.3 NaN 3255 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5343 33.92 NaN 32682 35 0 6434 0.261 + 30356 VLHFKSEGYND 11 22 436.87923803806666 NaN 0 436.87872314453125 PEAK HCD FTMS 0 0 0 5338 10424.25390625 0.42021801471986336 15 -0.3966941833496094 5 Unmodified _VLHFKSEGYND_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 0.40826533853263924 0.34096201227758716 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78932.8 NaN 3256 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5344 33.924 NaN 51381 35 0 5651.5 0.261 + 8290 GVVADSLSGL 10 30 459.25015219266857 NaN 0 459.2498474121094 PEAK HCD FTMS 0 0 0 5338 15448.240234375 1 0 0 6 Unmodified _GVVADSLSGL_ REV__ENSG00000155719|ENST00000646100|OTOA;REV__nc|ENSG00000155719|Q7RTW8-2|OTOA;REV__nc|ENSG00000155719|Q7RTW8-4|OTOA;REV__nc|ENSG00000155719|Q7RTW8|OTOA 3.2813086475875832 0.33737594360511275 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.50236 0 0 131.1003887585809 635.3176363580686 766.4180251166495 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50236 - 3 + NaN NaN 95854.6 NaN 3257 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5345 33.927 NaN 12682 35 0 4783.4 0.261 + 22145 QKEIEKYVY 9 12 600.3176031753859 NaN 0 600.3174438476562 PEAK HCD FTMS 0 0 0 5338 5709.025390625 0.9456260056606132 1 -0.026668548583984375 7 Unmodified _QKEIEKYVY_ ENSG00000155890|ENST00000286349|TRIM42 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100805 NaN 3258 2085 5338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5347 33.932 NaN 160990 35 0 28670 0.327 -1 0 47 434.7800756048019 867.5455982764038 2 434.7799072265625 MULTI HCD FTMS 0 0 0 5346 31254.712890625 0.5981363461503096 10 -0.2525787353515625 1 NaN NaN 2 [PA]AA 4 -1 19.693 0 0 2.2699 0 0 0 554.3602399602506 554.3602399602506 8.239087409443187 0 0 0 0 0 1.6989700043360187 0 0 [PA]AA 2.2699 - 23 NaN NaN 108862.7 NaN 3259 2086 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5348 33.937 NaN 118010 35 0 21198 0.261 + -1 DHYCLVQAL 9 33 559.7695775022922 1117.5246020713844 2 559.7730712890625 MULTI HCD FTMS 0 0 0 5346 41567.578125 0.3229003542002626 -30 0.7105979919433594 2 Carbamidomethyl (C) _DHYC(Carbamidomethyl (C))LVQAL_ REV__ENSG00000135476|ENST00000257934|ESPL1;REV__nc|ENSG00000135476|Q14674-2|ESPL1 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F}YA{I|L} 4 -1 32.423 0 0 2.9013 0 0 605.2962513654312 0 605.2962513654312 0 10.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}YA{I|L} 2.9013 - 15 NaN NaN 118653.2 NaN 3260 2086 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5349 33.94 NaN 80510 35 0 9184.1 0.264 -1 CDKILMLYF 9 34 406.8689744076761 1217.5850938232284 3 406.86859130859375 MULTI HCD FTMS 0 0 0 5346 24587.361328125 0.9351296915899805 1 -0.023349761962890625 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DKILM(Oxidation (M))LYF_ ENST00000394885.7_1_15:77241588-77241771:+|nuORF 4.897010918128616 0.31389406404703984 2 N{M(Oxidation (M))|F} 2 -1 22.831 0 0 1.8751 0 0 938.4649594011565 0 938.4649594011565 0 22.830918867322296 0 0 0 0.4247425010840047 0 0 0 N{M(Oxidation (M))|F} 1.8751 - 4 + NaN NaN 110809.4 NaN 3261 2086 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5350 33.944 NaN 35281 35 0 8263.9 0.261 + 23946 RTWRETFLDNL 11 19 484.2528594448712 1449.7367489348137 3 484.2528076171875 MULTI HCD FTMS 0 0 0 5346 19087.671875 0.4413086620314502 4 -0.09321212768554688 4 Unmodified _RTWRETFLDNL_ ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-2|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85714.8 NaN 3262 2086 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5351 33.947 NaN 58145 35 0 7036.7 0.261 + 27916 TEIEGTQKL 9 33 509.77452886115975 1017.5345047891195 2 509.7744445800781 MULTI HCD FTMS 0 0 0 5346 27870.515625 0.7496019200293165 2 -0.0433349609375 5 Unmodified _TEIEGTQKL_ ENSG00000120899|ENST00000346049|PTK2B;nc|ENSG00000120899|Q14289-2|PTK2B 23.789781309258295 0.1548179064208189 2 E{I|L}[DP] 4 7 30.005 0 0 2.9488 0 0 545.3154164044937 0 545.3154164044937 0 30.00508444608478 0 0 0 1.3807196863200843 0 0 0 E{I|L}[DP] 2.9488 - 23 NaN NaN 93655 NaN 3263 2086 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5352 33.95 NaN 238280 35 0 22532 0.261 + 31083 VTESANQLTQR 11 48 623.8231175259798 1245.6316821187595 2 623.8228759765625 MULTI HCD FTMS 0 0 0 5346 60231.12890625 0.04141381836688703 -6 0.13335418701171875 6 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 49.74193281347159 0.08247801322054248 2 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR 11 -1 + 113.85 0 0 9.1402 9.1402 90.137 0 0 0 2.9973637813804714 2.9973637813804714 2.9973637813804714 2.9973637813804714 0 3.9247425010840047 0 2.721848749616356 0 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR;[TA]ADTAAQ{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}T[AG]R;[TA]ADTAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}AASR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}AASR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}AAA[TA];{[RE]|[WV]}{[CA]|SS}AAQ{I|L}TQ[VG] 9.1402;8.8996;8.4074;8.4074;8.1692;7.677;7.3173;6.5869;6.4477;6.4014 -;-;-;-;-;-;-;-;-;- 894 NaN NaN 127328.4 NaN 3264 2086 5346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5354 33.956 NaN 92130 35 0 22432 0.327 -1 FPDSEPPRM 9 27 546.2449526635525 1090.4753523939048 2 546.24462890625 MULTI HCD FTMS 0 0 0 5353 50131.69140625 0.8931433810429453 4 -0.10637664794921875 1 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 31.26834338654808 0.10542797264966089 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRESDP 8 -1 61.375 0 0 5.6283 0 0 0 144.04670071483477 144.04670071483477 57.39577516576787 0 0 0 0 0.5 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRESDP 5.6283 - 104 NaN NaN 98314.8 NaN 3265 2087 5353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5355 33.96 NaN 69884 35 0 14581 0.261 -1 HSLPQEPVM 9 28 527.254951403515 1052.4953498738298 2 527.25537109375 MULTI HCD FTMS 0 0 0 5353 27547.275390625 0.08639078393768272 16 -0.4031791687011719 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 16.149105407346934 0.22083165093524068 2 {[YD]|[{M(Oxidation (M))|F}M]}[RK]E[VP]{M(Oxidation (M))|F} 8 -1 + 28.913 0 0 2.7471 2.7471 88.248 0 0 0 3.4678748622465605 19.960762528683702 3.4678748622465605 28.913187455970544 0 0.9247425010840047 0 0 0 {[YD]|[{M(Oxidation (M))|F}M]}[RK]E[VP]{M(Oxidation (M))|F} 2.7471 - 20 NaN NaN 98817.3 NaN 3266 2087 5353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5356 33.964 NaN 39788 35 0 9374.9 0.261 + 20571 PEGDTARLL 9 25 486.2617912827711 970.5090296323423 2 486.26116943359375 MULTI HCD FTMS 0 0 0 5353 21649.51171875 0.9278168524831011 1 -0.019985198974609375 3 Unmodified _PEGDTARLL_ ENSG00000100767|ENST00000644200|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF;nc|ENSG00000100767|O95428-2|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;nc|ENSG00000100767|O95428-6|PAPLN 2.0597508629832335 0.3354026079994024 2 R 1 8 3.9794 0 0 0.41003 0 0 329.52521723175477 481.8597506158813 811.3849678476361 0 0 0 0 0 0 0 0 0 + R 0.41003 + + 1 + NaN NaN 91130.3 NaN 3267 2087 5353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5357 33.967 NaN 59090 35 0 11239 0.261 -1 NANHPDFPM 9 28 529.7217540124323 1057.4289550916644 2 529.7218017578125 MULTI HCD FTMS 0 0 0 5353 19138.97265625 0.4951203696059179 -7 0.15670394897460938 4 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 3.944395688203298 0.32111559684428237 2 {[{M(Oxidation (M))|F}D]|MM}[WY][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 8 -1 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}D]|MM}[WY][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 0 - 8 + NaN NaN 114520.5 NaN 3268 2087 5353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5358 33.97 NaN 42141 35 0 7092 0.261 -1 LPDDPAKTTM 10 24 552.765959990644 1103.5173670480879 2 552.765625 MULTI HCD FTMS 0 0 0 5353 6991.0078125 0.0712463195464498 35 -0.8077659606933594 5 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92581.7 NaN 3269 2087 5353 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5360 33.976 NaN 180300 35 0 34010 0.327 + 16149 LPTSSGALLS 10 50 473.2663383922715 944.518123851343 2 473.2662658691406 MULTI HCD FTMS 0 0 0 5359 93597.2890625 0.6128866987231464 2 -0.049877166748046875 1 Unmodified _LPTSSGALLS_ REV__ENSG00000275023|ENST00000621332|MLLT6 30.636539890814138 0.2266618088935899 2 {I|L}PTT 4 -1 58.418 0 0 6.1849 0 0 0 529.2736910455686 529.2736910455686 47.97228775315752 0 0 0 0 0.5 1.6989700043360187 0.75 0 {I|L}PTT 6.1849 - 32 + NaN NaN 115878 NaN 3270 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5361 33.98 NaN 93609 35 0 14594 0.261 + 18439 MPVHAAVQM 9 37 500.24131771201434 998.4680824908287 2 500.2410888671875 MULTI HCD FTMS 0 0 0 5359 40931.08984375 0.649599225020827 -1 0.019985198974609375 2 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 44.40701690623563 0.04511410083598184 2 AAVQ{M(Oxidation (M))|F} 5 4 44.508 0 0 4.4577 0 0 464.2208729474625 0 464.2208729474625 0 44.508272069161734 0 0 0 1.305462187404089 0 0 0 + AAVQ{M(Oxidation (M))|F} 4.4577 + + 42 NaN NaN 106672 NaN 3271 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5362 33.984 NaN 85038 35 0 21313 0.261 -1 NADPQAVTM 9 29 481.71613286382154 961.4177127944431 2 481.7160949707031 MULTI HCD FTMS 0 0 0 5359 31599.87890625 0.027300562444498272 83 -2.0434799194335938 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 27.223235318498237 0.1251536255799991 2 AVT{M(Oxidation (M))|F} 4 -1 45.477 0 0 4.7302 0 0 525.2181263654312 0 525.2181263654312 0 45.477372199242296 0 0 0 1.805462187404089 0 0 0 AVT{M(Oxidation (M))|F} 4.7302 + + 41 NaN NaN 94671 NaN 3272 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5363 33.987 NaN 50761 35 0 5839.8 0.261 -1 AFCKDYFHWC 10 33 459.5229326423745 1375.5469685273235 3 459.52301025390625 MULTI HCD FTMS 0 0 0 5359 12820.513671875 0.6709437466857084 3 -0.08639144897460938 4 Carbamidomethyl (C) _AFCKDYFHWC(Carbamidomethyl (C))_ ENSG00000145536|ENST00000274181|ADAMTS16 0.15932191953741626 0.4744603884079788 2 V 1 -1 0.9691 0 0 0.070452 0 0 938.3627777087673 335.0996187799438 1273.4623964887112 0 0 0 0 0 0 0 0 0 V 0.070452 - 4 + NaN NaN 89504.6 NaN 3273 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5364 33.99 NaN 67851 35 0 12824 0.261 -1 VVDPNDPQM 9 23 515.7289458788813 1029.4433388245625 2 515.7290649414062 MULTI HCD FTMS 0 0 0 5359 21557.423828125 0.6172922920739574 7 -0.18931198120117188 5 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 8.155526934196011 0.2891920862272901 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89521.5 NaN 3274 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5365 33.994 NaN 29097 35 0 5654.4 0.261 + 20557 PEEESERHILE 11 28 456.5526764482268 1366.6361999448804 3 456.5528259277344 MULTI HCD FTMS 0 0 0 5359 6711.6630859375 0.020383614574659172 40 -0.9438095092773438 6 Unmodified _PEEESERHILE_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 0.40826533853263924 0.41713015341995335 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82959.1 NaN 3275 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5366 33.997 NaN 16044 35 0 2874.4 0.261 + -1 QPYCEWFDL 9 15 629.266426535663 1256.5183001381258 2 629.2665405273438 MULTI HCD FTMS 0 0 0 5359 7698.11865234375 0.4873825074294102 -3 0.07000350952148438 7 Carbamidomethyl (C) _QPYC(Carbamidomethyl (C))EWFDL_ REV__ENST00000367178.7_2_6:155153267-155153360:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104737.1 NaN 3276 2088 5359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5368 34.002 NaN 318460 35 0 65779 0.327 + 9336 HPSAHDVIL 9 38 494.76416344665756 987.5137739601151 2 494.7642517089844 MULTI HCD FTMS 0 0 0 5367 135462.75 0.7194482956411203 -4 0.0966033935546875 1 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 34.10243960390752 0.09241788333544565 2 V{I|L}{I|L} 3 6 31.198 0 0 3.1592 0 0 644.2658527378785 0 644.2658527378785 0 12.385606273598313 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 3.1592 + + 16 NaN NaN 154054.5 NaN 3277 2089 5367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5369 34.007 NaN 375010 35 0 31337 0.261 + 31088 VTESANQLTQR 11 70 416.21771802495607 1245.6313246750683 3 416.2176208496094 MULTI HCD FTMS 0 0 0 5367 104177.15625 0.3564520157684196 -3 0.06993484497070312 2 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 37.771325159832564 0.15130342846161757 2 [TA]S[WR]Q{I|L}T 8 -1 58.836 0 0 4.7234 0 0 0 299.14704309635005 299.14704309635005 46.07172793788305 0 0 0 0 2.1747425010840047 1.2218487496163564 0.8494850021680094 0 [TA]S[WR]Q{I|L}T 4.7234 - 175 + NaN NaN 140972.7 NaN 3278 2089 5367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5370 34.01 NaN 35851 35 0 7389.9 0.261 -1 0 22 626.8069093467525 2503.19853152061 4 627.0569458007812 MULTI HCD FTMS 0 0 0 5367 7710.5927734375 0.26852922593126094 9 -0.24261093139648438 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93969 NaN 3279 2089 5367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5371 34.014 NaN 30425 35 0 4102.9 0.261 + 34002 YLWYLPDE 8 24 549.7602808749274 1097.5060088166547 2 549.7598266601562 MULTI HCD FTMS 0 0 0 5367 7058.71142578125 0.09844083243492363 12 -0.3267021179199219 4 Unmodified _YLWYLPDE_ ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-2|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK 2.577480529830294 0.5381683276125971 2 P 1 7 3.9794 0 0 0.36259 0 0 708.7371317188016 288.6888826959594 997.4260144147611 0 0 0 0 0 0 0 0 0 + P 0.36259 + + 2 + NaN NaN 86596.8 NaN 3280 2089 5367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5372 34.017 NaN 27317 35 0 5808.7 0.261 + 30717 VPHWNFMYI 9 20 603.7934525583601 1205.57235218352 2 604.2965698242188 MULTI HCD FTMS 0 0 0 5367 5290.00244140625 0.5355511751509653 1 -0.02327728271484375 5 Unmodified _VPHWNFMYI_ REV__ENSG00000162144|ENST00000294072|CYB561A3;REV__ENST00000535177.1_1_11:61121022-61124194:-|nuORF;REV__ENST00000536687.1_1_11:61123996-61129264:-|nuORF;REV__ENST00000538263.5_1_11:61123519-61125228:-|nuORF;REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF;REV__nc|ENSG00000162144|Q8NBI2-2|CYB561A3 3.944395688203298 0.32111559684428237 2 Y{I|L} 2 -1 18.583 0 0 1.5415 0 0 911.4117909162125 0 911.4117909162125 0 14.604093769761874 0 0 0 0 0 0 0 Y{I|L} 1.5415 + + 2 NaN NaN 91717.7 NaN 3281 2089 5367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5373 34.02 NaN 20752 35 0 5025.7 0.261 -1 MLICVFMKI 9 21 585.8072567230048 1169.5999605128095 2 585.8074951171875 MULTI HCD FTMS 0 0 0 5367 11549.357421875 0.30473116089676006 -5 0.11993789672851562 6 Carbamidomethyl (C),Oxidation (M) _MLIC(Carbamidomethyl (C))VFM(Oxidation (M))KI_ ENST00000287474.9_1_1:100195237-100203667:-|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91917.3 NaN 3282 2089 5367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5375 34.025 NaN 618200 35 0 102780 0.326 -1 0 52 518.2320025578817 1034.4494521825634 2 518.2319946289062 MULTI HCD FTMS 0 0 0 5374 305111.1875 0.8954557598323687 -1 0.02327728271484375 1 NaN NaN 2 TSAA[MD]AAS{M(Oxidation (M))|F} 10 -1 71.191 0 0 6.882 0 0 64.01841532207602 0 64.01841532207602 0 48.97222222092239 0 0 0 0 0 2.1549471895720984 0 TSAA[MD]AAS{M(Oxidation (M))|F} 6.882 - 377 + NaN NaN 171971.1 NaN 3283 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5376 34.03 NaN 167760 35 0 18278 0.261 + 25080 SADMSHVAL 9 44 473.71869594825824 945.4228389633165 2 473.718505859375 MULTI HCD FTMS 0 0 0 5374 89519.7109375 0.6355160967138362 -4 0.09321212768554688 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 49.93300154707207 0.03166451819912738 2 {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 9 0 + 52.686 0 0 5.5728 5.5728 86.764 0 0 0 5.6424927368725974 45.69653125057968 5.6424927368725974 8.590671722280234 0 2.110924374808178 0 0.3494850021680094 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}VHSA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}VHAS{I|L} 5.5728;4.6641;2.224 +;-;- + 88 NaN NaN 111907.5 NaN 3284 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5377 34.033 NaN 133690 35 0 12240 0.261 + 2858 DYMKTTSNF 9 49 561.7423359205852 1121.4701189079703 2 561.7421264648438 MULTI HCD FTMS 0 0 0 5374 72625.671875 0.6306119518175138 -2 0.049877166748046875 3 Oxidation (M) _DYM(Oxidation (M))KTTSNF_ ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-3|NEMF;nc|ENSG00000165525|O60524-4|NEMF;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant 64.9267550582149 0.010729834900650251 2 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTSN{M(Oxidation (M))|F} 9 0 + 86.34 0 0 7.6988 7.6988 91.553 0 0 0 29.44968960007344 82.36014867606058 29.44968960007344 9.208187539523749 0 2.7689301784845295 2 0.8807196863200843 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTSN{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTSGG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}KTTA[YN] 7.6988;6.8777;5.2818 +;-;- + 247 NaN NaN 106855.3 NaN 3285 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5378 34.037 NaN 114540 35 0 17739 0.261 -1 APHTTEPML 9 37 506.7419529112571 1011.4693528893142 2 506.74188232421875 MULTI HCD FTMS 0 0 0 5374 43932.8203125 0.5960088800368327 12 -0.3167152404785156 4 Oxidation (M) _APHTTEPM(Oxidation (M))L_ ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA 16.942295170755138 0.21397866736869717 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 102439.5 NaN 3286 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5379 34.04 NaN 86473 35 0 10951 0.261 + 9695 HVTQEDFEM 9 45 576.2374500618795 1150.4603471905589 2 576.237548828125 MULTI HCD FTMS 0 0 0 5374 23773.548828125 0.2071868830550928 -9 0.2065887451171875 5 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 43.77239144664712 0.04802738721622131 2 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 5 53.488 0 0 4.6492 0 0 594.2752552716812 0 594.2752552716812 0 48.00312209084183 0 0 0 1.7302046884880937 0 0.4247425010840047 0 + D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.6492 + + 59 NaN NaN 110498.2 NaN 3287 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5380 34.043 NaN 41051 35 0 11230 0.261 + -1 WWPCMWCPE 9 22 627.2329486986955 1252.451344464191 2 627.2337646484375 MULTI HCD FTMS 0 0 0 5374 25235.208984375 0.22946019107364002 -15 0.3199005126953125 6 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 S 1 -1 3.0989 0 0 0.24743 0 0 720.209109212041 442.1893404596313 1162.3984496716723 0 0 0 0 0 0 0 0 0 S 0.24743 - 1 + NaN NaN 102804.1 NaN 3288 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5381 34.047 NaN 22780 35 0 4826.4 0.261 -1 HPHALGKFSMQ 11 17 634.8140027187866 1267.613452504373 2 634.8132934570312 MULTI HCD FTMS 0 0 0 5374 15309.943359375 0.6542614179127462 -2 0.049877166748046875 7 Oxidation (M) _HPHALGKFSM(Oxidation (M))Q_ ENST00000302251.9_1_11:104034783-104035068:-|nuORF 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92950.9 NaN 3289 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5382 34.05 NaN 24725 35 0 4018.1 0.262 + -1 FSGLMERPE 9 22 541.2526278028565 1080.490702672513 2 541.2679443359375 MULTI HCD FTMS 0 0 0 5374 6129.09228515625 0.03615527708618604 23 -0.5685386657714844 8 Oxidation (M) _FSGLM(Oxidation (M))ERPE_ REV__ENST00000590740.2_2_17:41322312-41322399:-|nuORF 4.3292370932331545 0.3181982124262546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 96895.7 NaN 3290 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5383 34.053 NaN 26638 35 0 5658.8 0.261 + -1 PMCLWDLAL 9 22 567.7700404598413 1133.5255279864825 2 567.7698974609375 MULTI HCD FTMS 0 0 0 5374 12476.7890625 1 0 0 9 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))C(Carbamidomethyl (C))LWDLAL_ REV__nc|ENSG00000185386|Q15759-3|MAPK11 1.844237919475145 0.33703635659052655 2 A{I|L} 2 -1 20.969 0 0 1.8499 0 0 931.3916696248986 0 931.3916696248986 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 1.8499 + + 1 NaN NaN 90351.9 NaN 3291 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5384 34.057 NaN 24438 35 0 2897.2 0.261 + 18017 MLLETPELHG 10 24 570.2938420621762 NaN 0 570.2617797851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _MLLETPELHG_ REV__ENSG00000169554|ENST00000627532|ZEB2;REV__nc|ENSG00000169554|O60315-2|ZEB2 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101264.4 NaN 3292 2090 5374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5386 34.062 NaN 584630 35 0 50694 0.327 + 24118 RYASINTHL 9 74 537.788190197135 1073.56182746107 2 537.78857421875 MULTI HCD FTMS 0 0 0 5385 155485.796875 0.823237794169766 -2 0.05979156494140625 1 Unmodified _RYASINTHL_ ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 24.990960013464015 0.14443998892849796 2 NTH{I|L} 4 5 50.068 0 0 4.6637 0 0 590.3172474591812 0 590.3172474591812 0 25.422633193029878 0 0 0 1.0629529932484498 0 0.75 0 + NTH{I|L} 4.6637 + + 234 NaN NaN 184297.9 NaN 3293 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5387 34.066 NaN 128920 35 0 23596 0.261 -1 SSGPVDPMM 9 29 476.6911297716007 951.3677066100014 2 476.6910095214844 MULTI HCD FTMS 0 0 0 5385 45425.765625 0.25250726840761034 25 -0.5751228332519531 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 {I|L}D 2 -1 15.701 0 0 1.6504 0 0 296.04264665082013 424.1833826141575 720.2260292649776 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}D 1.6504 - 6 + NaN NaN 103271.1 NaN 3294 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5388 34.07 NaN 84491 35 0 13181 0.261 -1 HVTQEDFEM 9 34 576.2374500618795 1150.4603471905589 2 576.2374267578125 MULTI HCD FTMS 0 0 0 5385 30690.935546875 0.26747202615703425 -8 0.19636917114257812 3 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 34.93206674587334 0.08860942999206235 2 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 -1 57.449 0 0 4.9935 0 0 465.23021132636876 0 465.23021132636876 0 57.44850021680094 0 0 0 1.8252574989159953 0 0.4247425010840047 0 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.9935 + + 34 NaN NaN 96368.5 NaN 3295 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5389 34.073 NaN 24255 35 0 4932.8 0.261 + 3012 EAANYQDTIGR 11 17 619.2943660302975 1236.574179127395 2 619.29443359375 MULTI HCD FTMS 0 0 0 5385 17162.935546875 0.13919548155865077 8 -0.21703338623046875 4 Unmodified _EAANYQDTIGR_ ENSG00000026025|ENST00000544301|VIM 3.5870582119611467 0.4031890477297048 2 [RD]NYQ 5 8 17.703 0 0 1.4316 0 0 0 557.2719210260374 557.2719210260374 17.703037561203843 0 0 0 0 0 0 0 0 [RD]NYQ 1.4316 - 8 + NaN NaN 86349.1 NaN 3296 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5390 34.077 NaN 25807 35 0 6160.6 0.261 + 7236 FSTCSSHLTV 10 13 541.2526278028565 1080.490702672513 2 541.2687377929688 MULTI HCD FTMS 0 0 0 5385 4647.4697265625 0.02741524321969722 24 -0.5585479736328125 5 Unmodified _FSTCSSHLTV_ ENSG00000150261|ENST00000279783|OR8K1;ENSG00000169214|ENST00000641470|OR6F1;ENSG00000171481|ENST00000304820|OR1L3;ENSG00000172772|ENST00000395079|OR10W1;ENSG00000177476|ENST00000320002|OR2G3;ENSG00000197437|ENST00000642119|OR13G1;ENSG00000256574|ENST00000553795|OR13A1;nc|ENSG00000180068|P47883|OR3A4P;OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 76847.6 NaN 3297 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5391 34.08 NaN 19375 35 0 4468.8 0.261 + -1 VPAICQRMIC 10 20 603.7934525583601 1205.57235218352 2 603.7939453125 MULTI HCD FTMS 0 0 0 5385 7287.2470703125 0.685686495943573 2 -0.0498504638671875 6 Carbamidomethyl (C),Oxidation (M) _VPAIC(Carbamidomethyl (C))QRM(Oxidation (M))IC_ REV__ENSG00000089094|ENST00000377071|KDM2B;REV__ENST00000538503.5_1_12:121882954-121987523:-|nuORF;REV__nc|ENSG00000089094|Q8NHM5-2|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-3|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90102.7 NaN 3298 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5392 34.083 NaN 34993 35 0 8878.8 0.262 -1 NARNKDEM 8 29 497.2262904852619 NaN 0 497.2259826660156 PEAK HCD FTMS 0 0 0 5385 2213.721923828125 0.11203027348547322 19 -0.4658164978027344 7 Oxidation (M) _NARNKDEM(Oxidation (M))_ ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89254.8 NaN 3299 2091 5385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5394 34.089 NaN 2371100 35 0 217310 0.327 + 31084 VTESANQLTQR 11 96 623.8231175259798 1245.6316821187595 2 623.8232421875 MULTI HCD FTMS 0 0 0 5393 1454372.75 1 0 0 1 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 107.5634045930896 0.020335030202666193 2 TAADTAAQ{I|L}TQR 12 -1 + 169.97 0 0 13.645 13.645 93.759 0 0 0 88.91084583961555 14.226208160867856 14.226208160867856 9.098233696509112 0 4.079689690656103 0 2.843322544373148 2.321333751784366 TAADTAAQ{I|L}TQR;TAADTAAQ{I|L}T[AG]R;TAADTAA[AG]{I|L}TQR;TAADTAA[AG]{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR;TAAD{[QD]|[EN]|[WG]|[KD]|[RS]}Q{I|L}TQR;{[ES]|[DT]|[{I|L}C]}AATAAQ{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}GRAT 13.645;12.914;12.914;12.186;10.502;10.302;9.9061;9.7689;9.7689;9.6891 -;-;-;-;-;-;-;-;-;- 49992 + NaN NaN 446136.3 NaN 3300 2092 5393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5395 34.093 NaN 544180 35 0 65129 0.264 -1 RYVRKFVLM 9 56 409.90584316911765 1226.695700107553 3 409.9058532714844 MULTI HCD FTMS 0 0 0 5393 148258.359375 0.7183721339415935 5 -0.13291549682617188 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 11.494710602746466 0.2610445893512368 2 {I|L}{M(Oxidation (M))|F} 2 -1 27.717 0 0 2.2594 0 0 948.5650450417687 0 948.5650450417687 0 0.26925019195367383 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2594 + + 32 NaN NaN 183473.8 NaN 3301 2092 5393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5396 34.097 NaN 68047 35 0 7600.4 0.261 -1 0 32 555.5460760370163 2218.155198281665 4 555.7965698242188 MULTI HCD FTMS 0 0 0 5393 6452.728515625 0.15601893234180295 23 -0.5319557189941406 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 97461.3 NaN 3302 2092 5393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5397 34.1 NaN 25789 35 0 4217.3 0.261 -1 HKQHFLPTCT 10 19 634.8140027187866 1267.613452504373 2 634.8150024414062 MULTI HCD FTMS 0 0 0 5393 23400.345703125 1 0 0 4 Carbamidomethyl (C) _HKQHFLPTC(Carbamidomethyl (C))T_ ENST00000504490.2_1_4:113279997-113280900:+|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84763.8 NaN 3303 2092 5393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5398 34.103 NaN 34760 35 0 5032.2 0.263 -1 0 21 512.2953929150003 1022.5762328968007 2 512.2963256835938 MULTI HCD FTMS 0 0 0 5393 12144.8662109375 0.34940284553740925 6 -0.15622711181640625 5 NaN NaN 2 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 7.4473 0 0 0.72829 0 0 616.3563975469943 0 616.3563975469943 0 7.447274948966937 0 0 0 0 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 0.72829 - 5 + NaN NaN 91790.8 NaN 3304 2092 5393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5399 34.107 NaN 34023 35 0 6281.2 0.261 -1 CRCCARCC 8 23 544.6875143865439 1087.3604758398876 2 544.6876220703125 MULTI HCD FTMS 0 0 0 5393 9124.109375 0.753829199225991 7 -0.19044113159179688 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))ARCC_ ENSG00000184261|ENST00000327876|KCNK12 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93852.9 NaN 3305 2092 5393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5401 34.112 NaN 107640 35 0 23738 0.327 -1 FPDSEPPRM 9 26 546.2449526635525 1090.4753523939048 2 546.244873046875 MULTI HCD FTMS 0 0 0 5400 50866.6640625 0.9062376123517937 10 -0.24695205688476562 1 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 24.990960013464015 0.14443998892849796 2 RESDPE 6 -1 43.136 0 0 3.9557 0 0 359.14805800605626 0 359.14805800605626 0 33.672137691284405 0 0 0 0.5 0 0 0 RESDPE 3.9557 - 45 NaN NaN 98122.7 NaN 3306 2093 5400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5402 34.116 NaN 72000 35 0 9752 0.261 -1 MPVHAAVQM 9 32 500.24131771201434 998.4680824908287 2 500.2409973144531 MULTI HCD FTMS 0 0 0 5400 50505.47265625 0.8015500203403515 4 -0.10965728759765625 2 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 34.10243960390752 0.09241788333544565 2 VQ{M(Oxidation (M))|F} 3 -1 43.5 0 0 4.3567 0 0 606.2949695531319 0 606.2949695531319 0 43.499934467764874 0 0 0 1.5 0 0 0.3807196863200844 VQ{M(Oxidation (M))|F} 4.3567 + + 46 + NaN NaN 101691.9 NaN 3307 2093 5400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5403 34.12 NaN 59489 35 0 4768.3 0.261 -1 MEDSAIKCEYM 11 37 459.5229326423745 1375.5469685273235 3 459.5230712890625 MULTI HCD FTMS 0 0 0 5400 12122.8515625 0.6344325708026708 8 -0.21706008911132812 3 Carbamidomethyl (C) _MEDSAIKC(Carbamidomethyl (C))EYM_ ENSG00000119715|ENST00000644823|ESRRB;nc|ENSG00000119715|O95718-1|ESRRB;nc|ENSG00000119715|O95718-2|ESRRB;nc|ENSG00000119715|O95718|ESRRB 0.3666738066901352 0.4173125597497531 2 {M(Oxidation (M))|F} 1 -1 1.5938 0 0 0.11587 0 0 797.7392425525173 427.7257174127563 1225.4649599652737 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.11587 + + 1 + NaN NaN 89796.9 NaN 3308 2093 5400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5404 34.123 NaN 49954 35 0 8459.9 0.261 -1 LPDDPAKTTM 10 38 552.765959990644 1103.5173670480879 2 552.7649536132812 MULTI HCD FTMS 0 0 0 5400 2118.19140625 0.021586779165143635 41 -0.9402580261230469 4 Oxidation (M) _LPDDPAKTTM(Oxidation (M))_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92699.5 NaN 3309 2093 5400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5406 34.128 NaN 406950 35 0 88526 0.327 + 9337 HPSAHDVIL 9 40 494.76416344665756 987.5137739601151 2 494.7641906738281 MULTI HCD FTMS 0 0 0 5405 187621.65625 0.9964664146743415 1 -0.036487579345703125 1 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 39.957323273324995 0.06554068735427583 2 DV{I|L}{I|L} 4 5 43.488 0 0 4.4038 0 0 529.2374134748062 0 529.2374134748062 0 24.675390846596486 0 0 0 0.5 0 0.805462187404089 0 + DV{I|L}{I|L} 4.4038 + + 25 NaN NaN 139230 NaN 3310 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5407 34.133 NaN 209570 35 0 92735 0.261 + -1 IFYCSSGFS 9 31 534.2265676856815 NaN 0 534.2145385742188 PEAK HCD FTMS 0 0 0 5405 4043.726806640625 0.36987263045637386 8 -0.21376800537109375 2 Carbamidomethyl (C) _IFYC(Carbamidomethyl (C))SSGFS_ REV__ENSG00000205846|ENST00000382073|CLEC6A;REV__nc|ENSG00000205846|Q6EIG7-2|CLEC6A 7.289230182591677 0.2599242500475609 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117740.8 NaN 3311 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5408 34.136 NaN 89086 35 0 19210 0.261 -1 NADPQAVTM 9 29 481.71613286382154 961.4177127944431 2 481.7161560058594 MULTI HCD FTMS 0 0 0 5405 30129.13671875 0.02602992184968067 89 -2.199840545654297 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 11.494710602746466 0.2610445893512368 2 AV[{M(Oxidation (M))|F}T] 4 -1 30.445 0 0 3.1667 0 0 525.2182484357437 0 525.2182484357437 0 30.445312593723983 0 0 0 1.4247425010840047 0 0 0 AV[{M(Oxidation (M))|F}T] 3.1667 + + 19 NaN NaN 100618.6 NaN 3312 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5409 34.14 NaN 75613 35 0 15648 0.261 -1 NANHPDFPM 9 31 529.7217540124323 1057.4289550916644 2 529.721923828125 MULTI HCD FTMS 0 0 0 5405 38655.19140625 1 0 0 4 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 -1 27.92 0 0 2.6403 0 0 648.2621287750613 0 648.2621287750613 0 27.919562702124452 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 2.6403 + + 16 + NaN NaN 91864.9 NaN 3313 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5410 34.143 NaN 53921 35 0 12382 0.261 + 17658 MAAASPPAPP 10 24 455.2286102244956 908.4426675157912 2 455.22833251953125 MULTI HCD FTMS 0 0 0 5405 26543.36328125 0.8565608402213815 2 -0.05641937255859375 5 Unmodified _MAAASPPAPP_ REV__ENSG00000166317|ENST00000394810|SYNPO2L;REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L 19.256988751693697 0.33098864134661865 2 MAAA 4 -1 57.423 0 0 6.321 0 0 0 561.2678927057249 561.2678927057249 57.422750325201406 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 MAAA 6.321 + + 22 + NaN NaN 87652.5 NaN 3314 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5411 34.146 NaN 24983 35 0 5644 0.261 -1 0 18 569.2621693924049 568.2548929258048 1 569.261962890625 MULTI HCD FTMS 0 0 0 5405 20127.025390625 0.8534901783966137 2 -0.05641937255859375 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85598.3 NaN 3315 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5412 34.15 NaN 53839 35 0 9006.4 0.261 -1 HSLPQEPVM 9 29 527.254951403515 1052.4953498738298 2 527.2548217773438 MULTI HCD FTMS 0 0 0 5405 12174.0947265625 0.03817907841140879 23 -0.5219306945800781 7 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 16.149105407346934 0.22083165093524068 2 E[VP]{M(Oxidation (M))|F} 4 -1 24.45 0 0 2.3231 0 0 562.2825794904312 0 562.2825794904312 0 24.45046257204389 0 0 0 0.8252574989159953 0 0 0 E[VP]{M(Oxidation (M))|F} 2.3231 + + 11 NaN NaN 106208.1 NaN 3316 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5413 34.153 NaN 19565 35 0 3552.1 0.261 -1 RRLIGKQCMCL 11 15 484.2528594448712 1449.7367489348137 3 484.2530822753906 MULTI HCD FTMS 0 0 0 5405 8422.8798828125 0.19473772788414523 12 -0.30002593994140625 8 2 Carbamidomethyl (C),Oxidation (M) _RRLIGKQC(Carbamidomethyl (C))M(Oxidation (M))C(Carbamidomethyl (C))L_ ENSG00000138780|ENST00000515279|GSTCD;nc|ENSG00000138780|Q8NEC7-3|GSTCD 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83794.1 NaN 3317 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5414 34.156 NaN 40338 35 0 6513.1 0.261 + 2084 DEVPNMSLSL 10 29 552.765959990644 1103.5173670480879 2 553.2677612304688 MULTI HCD FTMS 0 0 0 5405 15164.025390625 0.22576553430027752 44 -1.030609130859375 9 Unmodified _DEVPNMSLSL_ REV__ENSG00000171487|ENST00000390649|NLRP5 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 83173 NaN 3318 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5415 34.16 NaN 19643 35 0 3571.4 0.261 + -1 STTEQSSDKQM 11 21 629.266426535663 1256.5183001381258 2 629.2665405273438 MULTI HCD FTMS 0 0 0 5405 13952.025390625 0.8833292166172713 3 -0.09307479858398438 10 Oxidation (M) _STTEQSSDKQM(Oxidation (M))_ REV__ENSG00000171657|ENST00000302548|GPR82 0.9622753412299311 0.4147004537482263 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109624.8 NaN 3319 2094 5405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5417 34.165 NaN 470550 35 0 43175 0.327 + 31089 VTESANQLTQR 11 76 416.21771802495607 1245.6313246750683 3 416.2176818847656 MULTI HCD FTMS 0 0 0 5416 196172.796875 0.6712238210574353 3 -0.07989883422851562 1 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 25.997395711884035 0.23056625056501562 2 [TA]S[RD]AQ{I|L}T 9 -1 68.764 0 0 5.5204 0 0 0 299.14679895572505 299.14679895572505 55.26933838679369 0 0 0 0 2.5994850021680094 1.154901959985743 0.4247425010840047 0.3494850021680094 [TA]S[RD]AQ{I|L}T 5.5204 - 454 + NaN NaN 158011.4 NaN 3320 2095 5416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5418 34.169 NaN 54362 35 0 5532.7 0.261 + 5079 FEDSTKMY 8 35 510.7219814367807 NaN 0 510.73748779296875 PEAK HCD FTMS 0 0 0 5416 3924.955078125 0.6453878296626802 -4 0.1029205322265625 2 Unmodified _FEDSTKMY_ ENST00000343455.7_1_14:95562307-95562397:-|nuORF 2.302733041254933 0.38822285293237185 2 S 1 7 4.6041 0 0 0.45163 0 0 392.1430462702427 537.2316378229124 929.3746840931551 0 0 0 0 0 0 0 0 0 + S 0.45163 + + 4 + NaN NaN 85791 NaN 3321 2095 5416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5419 34.173 NaN 52711 35 0 10512 0.261 -1 VVDPNDPQM 9 21 515.7289458788813 1029.4433388245625 2 515.7295532226562 MULTI HCD FTMS 0 0 0 5416 13506.0576171875 0.3867431159617251 14 -0.34302520751953125 3 Oxidation (M) _VVDPNDPQM(Oxidation (M))_ ENSG00000151883|ENST00000281631|PARP8 8.155526934196011 0.2891920862272901 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88898 NaN 3322 2095 5416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5420 34.176 NaN 41113 35 0 6057.3 0.261 -1 HSLPQEPVM 9 21 527.254951403515 1052.4953498738298 2 527.25634765625 MULTI HCD FTMS 0 0 0 5416 16236.4306640625 0.0509189367561031 24 -0.5253639221191406 4 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 6.2057823575117 0.30397260197431997 2 {[ET]|[MV]}M 3 -1 15.458 0 0 1.4687 0 0 0 688.3035522444255 688.3035522444255 15.45757490560675 0 0 0 0 0.5 0 0 0 {[ET]|[MV]}M 1.4687 - 2 + NaN NaN 100108.3 NaN 3323 2095 5416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5421 34.18 NaN 48123 35 0 8081.8 0.261 -1 HYDTRDDC 8 38 541.2039608057391 NaN 0 541.2037353515625 PEAK HCD FTMS 0 0 0 5416 10078.6220703125 0.9928905997234859 1 -0.019931793212890625 5 Carbamidomethyl (C) _HYDTRDDC(Carbamidomethyl (C))_ ENSG00000198010|ENST00000637795|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2 0.6903765706972694 0.38822285293237185 2 T 1 -1 3.9794 0 0 0.36833 0 0 730.7194012483939 245.59620081119377 976.3156020595876 0 0 0 0 0 0 0 0 0 T 0.36833 + + 1 + NaN NaN 92883.6 NaN 3324 2095 5416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5423 34.185 NaN 535190 35 0 78053 0.327 -1 0 54 518.2320025578817 1034.4494521825634 2 518.23193359375 MULTI HCD FTMS 0 0 0 5422 287708.34375 0.8443810129471853 5 -0.1440582275390625 1 NaN NaN 2 TSAA[MD]AAS{M(Oxidation (M))|F} 10 -1 68.933 0 0 6.6637 0 0 64.01732916983742 0 64.01732916983742 0 52.735097166722156 0 0 0 0 0 2.2302046884880937 0 TSAA[MD]AAS{M(Oxidation (M))|F} 6.6637 - 403 + NaN NaN 170977.6 NaN 3325 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5424 34.189 NaN 363310 35 0 35657 0.261 + 6771 FPQYAPPVMA 10 68 560.7764012851299 NaN 0 560.7908325195312 PEAK HCD FTMS 0 0 0 5422 15230.5458984375 0.6399943649922394 6 -0.1573486328125 2 Unmodified _FPQYAPPVMA_ nc|ENSG00000073921|Q13492-3|PICALM 10.073929032068715 0.33156240198919784 2 AN[KP]SDA 7 8 26.858 0 0 2.399 0 0 227.09873748905596 206.09316431217033 433.1919018012263 0 0 0 0 0 0 0 0.5866968715561641 0.7302046884880937 AN[KP]SDA 2.399 - 547 + NaN NaN 139221.9 NaN 3326 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5425 34.193 NaN 189040 35 0 18702 0.262 + 25081 SADMSHVAL 9 42 473.71869594825824 945.4228389633165 2 473.7184753417969 MULTI HCD FTMS 0 0 0 5422 135168.34375 0.9595837309980597 2 -0.059967041015625 3 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 68.08070601005525 0.009709267492204555 2 {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L} 9 0 + 70.089 0 0 7.4135 7.4135 91.928 0 0 0 10.132965752203233 10.132965752203233 10.132965752203233 9.771212547196626 0 2.3494850021680094 1.5228787452803376 0.805462187404089 0 + + {[SA]|[TG]}D{M(Oxidation (M))|F}[HS]VA{I|L};{[SA]|[TG]}D{M(Oxidation (M))|F}[HV]SA{I|L} 7.4135;6.38 +;- + 43 NaN NaN 115853.7 NaN 3327 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5426 34.196 NaN 79923 35 0 22914 0.261 -1 LCQCCSTGEP 10 34 627.2329486986955 1252.451344464191 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5422 56983.17578125 0.5181399690743349 -9 0.22922897338867188 4 Acetyl (Protein N-term),3 Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))QC(Carbamidomethyl (C))C(Carbamidomethyl (C))STGEP_ ENST00000233121.6_1_2:27249316-27249727:+|nuORF 1.3295316138638542 0.46826628246186464 2 PE 2 -1 20.969 0 0 1.6742 0 0 1008.3652210919937 0 1008.3652210919937 0 10 0 0 0 0 0 0 0 PE 1.6742 - 13 NaN NaN 97470.8 NaN 3328 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5427 34.2 NaN 108620 35 0 15098 0.263 -1 APHTTEPML 9 37 506.7419529112571 1011.4693528893142 2 506.7418212890625 MULTI HCD FTMS 0 0 0 5422 39531.76171875 0.5363024923116839 18 -0.4224510192871094 5 Oxidation (M) _APHTTEPM(Oxidation (M))L_ ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA 16.942295170755138 0.21397866736869717 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101359.8 NaN 3329 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5428 34.203 NaN 33931 35 0 4444.8 0.261 -1 KYMETIEKL 9 22 585.8072567230048 1169.5999605128095 2 585.8072509765625 MULTI HCD FTMS 0 0 0 5422 32095.560546875 0.8468451592429491 2 -0.059967041015625 6 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion;PPP1R21-GTF2A1L|3|fusion 9.38312468134398 0.279288223203164 2 E 1 -1 11.237 0 0 0.96077 0 0 259.1892821533881 778.3433931940061 1037.5326753473942 0 0 0 0 0 0 0 0.4247425010840047 0 E 0.96077 + + 2 + NaN NaN 93775.5 NaN 3330 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5429 34.206 NaN 85674 35 0 14657 0.262 + 9714 HVYQDDIS 8 32 488.7220763251731 NaN 0 488.721923828125 PEAK HCD FTMS 0 0 0 5422 13530.89453125 0.7345584141434202 1 -0.036655426025390625 7 Unmodified _HVYQDDIS_ REV__nc|ENSG00000131044|Q3SXZ7-2|TTLL9;REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9 4.75600775471527 0.38822285293237185 2 SA 2 -1 10.969 0 0 1.1245 0 0 149.10603255616337 665.2312716119749 814.3373041681382 0 0 0 0 0 0 0 0 0 SA 1.1245 - 4 + NaN NaN 101496.2 NaN 3331 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5430 34.21 NaN 29092 35 0 6856 0.261 -1 RTMCCCPR 8 22 550.2174107033512 NaN 0 550.2179565429688 PEAK HCD FTMS 0 0 0 5422 12056.265625 0.530320125548797 317 -8.0299072265625 8 2 Carbamidomethyl (C),Oxidation (M) _RTM(Oxidation (M))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CPR_ ENST00000371712.3_1_9:139327509-139329265:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88451.7 NaN 3332 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5431 34.213 NaN 16338 35 0 5428.4 0.261 -1 QCTYDMCFR 9 15 640.7463989257812 NaN 0 640.7463989257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))TYDMC(Carbamidomethyl (C))FR_ ENST00000403028.7_1_15:49913184-49917342:+|nuORF;ENST00000561188.5_1_15:49915962-49917342:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97326.3 NaN 3333 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5432 34.216 NaN 23553 35 0 6718.4 0.261 + 17929 MINSHVEYH 9 14 565.2577997184048 NaN 0 565.25927734375 PEAK HCD FTMS 0 0 0 5422 4402.13232421875 0.7238451221406804 2 -0.059967041015625 10 Unmodified _MINSHVEYH_ sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99946.3 NaN 3334 2096 5422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5434 34.222 NaN 167670 35 0 33510 0.327 + 9696 HVTQEDFEM 9 37 576.2374500618795 1150.4603471905589 2 576.2374877929688 MULTI HCD FTMS 0 0 0 5433 94392.5234375 0.8226324498757157 -2 0.05658721923828125 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 63.960520009940105 0.0120409805053046 2 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 4 73.8 0 0 6.4148 0 0 465.2334317626276 0 465.2334317626276 0 60.612431371158735 0 0 0 2.4247425010840047 0 1.610924374808178 0 + ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.4148 + + 57 + NaN NaN 109573.3 NaN 3335 2097 5433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5435 34.226 NaN 107060 35 0 19563 0.262 -1 SSGPVDPMM 9 37 476.6911297716007 951.3677066100014 2 476.6908874511719 MULTI HCD FTMS 0 0 0 5433 30571.7265625 0.16993842720292637 31 -0.6979103088378906 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.5485 0 0 427.2074304676324 406.1106560186788 833.3180864863111 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 4 + NaN NaN 99292.3 NaN 3336 2097 5433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5436 34.23 NaN 14519 35 0 5145.6 0.261 + -1 CYTWCCTYN 9 13 607.2098623869218 NaN 0 607.2103271484375 PEAK HCD FTMS 0 0 0 5433 11456.736328125 0.7412647672310584 25 -0.5418815612792969 3 Carbamidomethyl (C) _CYTWC(Carbamidomethyl (C))CTYN_ REV__ENSG00000180083|ENST00000324384|WFDC11 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87219.9 NaN 3337 2097 5433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5437 34.233 NaN 18459 35 0 4125.1 0.261 + 21131 PPHHSQHADRG 11 21 619.794415611275 NaN 0 619.7957153320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PPHHSQHADRG_ REV__ENSG00000183530|ENST00000327423|PRR14L;REV__nc|ENSG00000183530|Q5THK1-2|PRR14L;REV__nc|ENSG00000183530|Q5THK1-3|PRR14L;REV__nc|ENSG00000183530|Q5THK1-4|PRR14L 1.3295316138638542 0.3383486451652214 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81420.3 NaN 3338 2097 5433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5438 34.236 NaN 26115 35 0 4555 0.262 + -1 ILLYLVCF 8 22 513.2897213263889 NaN 0 513.2904052734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ILLYLVCF_ REV__ENST00000402714.6_2_14:100610240-100610324:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83530.2 NaN 3339 2097 5433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5439 34.239 NaN 35886 35 0 8884 0.261 -1 RHAGCPCVTA 10 33 564.7574462890625 NaN 0 564.7574462890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _RHAGC(Carbamidomethyl (C))PC(Carbamidomethyl (C))VTA_ ENSG00000162390|ENST00000343744|ACOT11;ENST00000498228.1_1_1:55014277-55063089:+|nuORF;nc|ENSG00000162390|Q8WXI4|ACOT11 1.4819007175156935 0.33891598740166873 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.40835 0 0 421.2230997052748 543.2194307916624 964.4425304969373 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.40835 + + 1 + NaN NaN 93088.8 NaN 3340 2097 5433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5441 34.245 NaN 527210 35 0 47639 0.327 + 31085 VTESANQLTQR 11 57 623.8231175259798 1245.6316821187595 2 623.8231811523438 MULTI HCD FTMS 0 0 0 5440 299304.84375 0.2057965151987343 6 -0.1371917724609375 1 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 64.9267550582149 0.020241327821910484 2 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR 11 -1 + 120.5 0 0 9.6738 9.6738 92.092 0 0 0 6.615010663094239 61.65092944686333 6.615010663094239 6.703654497896395 0 3.9247425010840047 0 3.4080306233405295 0.3252574989159953 {[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}TQR;[TA]ADTAAQ{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DATAQ{I|L}TQR;[TA]ADTAA[AG]{I|L}TQR;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAA[AG]{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DTAAQ{I|L}AASR;{[QD]|[EN]|[WG]|[KD]|[RS]}DATAQ{I|L}T[AG]R;{[QD]|[EN]|[WG]|[KD]|[RS]}DATA[AG]{I|L}TQR 9.6738;9.1357;8.941;8.941;8.4835;8.4053;8.2106;7.8509;7.7506;7.7506 -;-;-;-;-;-;-;-;-;- 2110 NaN NaN 179392.8 NaN 3341 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5442 34.249 NaN 659720 35 0 257830 0.263 + 30673 VPEEKAAEL 9 58 493.2637122116489 984.5128714900978 2 493.263671875 MULTI HCD FTMS 0 0 0 5440 334148.71875 0.6745866510090228 -3 0.07989883422851562 2 Unmodified _VPEEKAAEL_ ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23 61.08992128646608 0.016056751534446034 2 VPEEK 5 4 75.904 0 0 7.7098 0 0 0 399.18537317447505 399.18537317447505 44.75772496747986 0 0 0 0 1.774227503252014 1.6989700043360187 1.0114393726401687 0 + VPEEK 7.7098 + + 971 + NaN NaN 184539 NaN 3342 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5443 34.253 NaN 259020 35 0 33977 0.261 + 35366 YYCKRLRIL 9 51 409.90584316911765 1226.695700107553 3 409.9057922363281 MULTI HCD FTMS 0 0 0 5440 71857.0234375 0.3481765445341383 11 -0.2631263732910156 3 Unmodified _YYCKRLRIL_ REV__MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|12|1|anti-sense 5.230669730166228 0.3113646817964458 2 {I|L}{M(Oxidation (M))|F} 2 -1 27.717 0 0 2.2594 0 0 948.5651168241458 0 948.5651168241458 0 4.4157690561088 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2594 - 35 NaN NaN 131718.1 NaN 3343 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5444 34.256 NaN 318520 35 0 50970 0.261 + 26129 SPLVTGGGHHL 11 42 537.788190197135 1073.56182746107 2 537.7880859375 MULTI HCD FTMS 0 0 0 5440 44907.54296875 0.23776825509598645 5 -0.113983154296875 4 Unmodified _SPLVTGGGHHL_ REV__ENSG00000140534|ENST00000268138|TICRR;REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR;REV__TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant 13.90604991867851 0.33591854289260503 2 KNTH{I|L} 5 -1 40.177 0 0 3.7424 0 0 462.22899062324376 0 462.22899062324376 0 33.187587626244124 0 0 0 0.3807196863200844 0 0.3807196863200844 0 KNTH{I|L} 3.7424 - 61 NaN NaN 152172.5 NaN 3344 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5445 34.264 NaN 93130 35 0 21986 0.261 -1 FPDSEPPRM 9 30 546.2449526635525 1090.4753523939048 2 546.244873046875 MULTI HCD FTMS 0 0 0 5440 37886.15625 0.6749776187209934 15 -0.34920501708984375 5 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 26.268140514670165 0.13340543277302316 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[ES]|[DT]|[{I|L}C]}RDPE 9 -1 + 50.691 0 0 4.6486 4.6486 82.622 0 0 0 3.753246544333777 34.493559221610965 3.753246544333777 1.817496819840656 0 0.5 0 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[ES]|[DT]|[{I|L}C]}RDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRV[EC]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{[ES]|[DT]|[{I|L}C]}DPE 4.6486;4.4819;4.2994 -;-;- 65 NaN NaN 102795.9 NaN 3345 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5446 34.267 NaN 73151 35 0 9193.9 0.261 + 2192 DIHGPDAKL 9 27 483.2565205172387 964.4984881012774 2 483.255859375 MULTI HCD FTMS 0 0 0 5440 47288.40234375 0.8725896770320754 -5 0.13296890258789062 6 Unmodified _DIHGPDAKL_ ENSG00000124942|ENST00000378024|AHNAK 20.41453444215458 0.18397929046831515 2 AK{I|L} 3 6 28.188 0 0 2.9225 0 0 634.2697171550532 0 634.2697171550532 0 10.427965835756435 0 0 0 0.5 0 0 0 + AK{I|L} 2.9225 + + 10 NaN NaN 101547.9 NaN 3346 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5447 34.27 NaN 74901 35 0 15134 0.261 + 9715 HVYQDDIS 8 38 488.7220763251731 NaN 0 488.7216491699219 PEAK HCD FTMS 0 0 0 5440 7213.8681640625 0.3916228558426231 3 -0.0840911865234375 7 Unmodified _HVYQDDIS_ REV__nc|ENSG00000131044|Q3SXZ7-2|TTLL9;REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9 4.75600775471527 0.38822285293237185 2 S 1 -1 6.9897 0 0 0.71658 0 0 149.10551632046491 736.2685030572874 885.3740193777523 0 0 0 0 0 0 0 0 0 S 0.71658 + + 1 + NaN NaN 96301.3 NaN 3347 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5448 34.274 NaN 71629 35 0 9394.1 0.261 + 16294 LQQSPRQT 8 40 479.2580334657823 NaN 0 479.2666931152344 PEAK HCD FTMS 0 0 0 5440 4708.0244140625 0.8160401339343787 1 -0.034214019775390625 8 Unmodified _LQQSPRQT_ REV__ENSG00000112494|ENST00000230256|UNC93A 3.944395688203298 0.38822285293237185 2 P 1 -1 5.4846 0 0 0.5734 0 0 113.06839009372591 743.3585909479124 856.4269810416383 0 0 0 0 0 0 0 0 0 P 0.5734 + + 5 + NaN NaN 98801.5 NaN 3348 2098 5440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5450 34.279 NaN 120710 35 0 14234 0.327 -1 MPVHAAVQM 9 41 500.24131771201434 998.4680824908287 2 500.2406005859375 MULTI HCD FTMS 0 0 0 5449 31790.408203125 0.5045315091945705 10 -0.228912353515625 1 Oxidation (M) _MPVHAAVQM(Oxidation (M))_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 23.1484247019978 0.1603590852062899 2 VQ{M(Oxidation (M))|F} 3 -1 39.041 0 0 3.9101 0 0 606.295732492585 0 606.295732492585 0 25.853481135844874 0 0 0 1.5 0 0 0.5 VQ{M(Oxidation (M))|F} 3.9101 + + 100 + NaN NaN 98834.9 NaN 3349 2099 5449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5451 34.283 NaN 37307 35 0 5013.6 0.261 -1 AAGVGDMVM 9 31 441.68865066692535 881.3627484006507 2 441.6884765625 MULTI HCD FTMS 0 0 0 5449 18014.056640625 0.19429606709173966 28 -0.6237869262695312 2 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.3242 0 0 716.3170463516258 0 716.3170463516258 0 8.789850105233297 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.3242 + + 7 + NaN NaN 92951.1 NaN 3350 2099 5449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5452 34.287 NaN 278580 35 0 101780 0.261 + 2659 DVFRDPALKR 10 41 406.2316275455635 1215.6730532368906 3 406.23126220703125 MULTI HCD FTMS 0 0 0 5449 59714.60546875 0.19482448419416185 -6 0.16718292236328125 3 Unmodified _DVFRDPALKR_ ENSG00000131469|ENST00000253788|RPL27 9.243775137331637 0.4246488630196457 2 PA{I|L}KR 5 5 32.206 0 0 2.6493 0 0 632.2933869646312 0 632.2933869646312 0 24.13425655227236 0 0 0 0.4247425010840047 0 0 0 + PA{I|L}KR 2.6493 + + 22 + NaN NaN 125070.8 NaN 3351 2099 5449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5453 34.29 NaN 42171 35 0 6123.9 0.261 -1 LFAKCCCCF 9 26 604.7389554518342 1207.4633579704682 2 604.7394409179688 MULTI HCD FTMS 0 0 0 5449 28770 0.5338462813047904 -2 0.057525634765625 4 3 Carbamidomethyl (C) _LFAKC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CF_ nc|ENSG00000160145|O60229-4|KALRN;nc|ENSG00000160145|O60229-6|KALRN 1.844237919475145 0.33703635659052655 2 T{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7366 0 0 941.3420277326187 0 941.3420277326187 0 20.969100130080562 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.7366 - 1 NaN NaN 87128.8 NaN 3352 2099 5449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5454 34.294 NaN 78834 35 0 10168 0.261 + 7164 FSHHSNLIV 9 35 527.2773658163322 1052.5401786994644 2 527.2771606445312 MULTI HCD FTMS 0 0 0 5449 17506.986328125 0.12186781932996402 -10 0.276824951171875 5 Unmodified _FSHHSNLIV_ ENSG00000213762|ENST00000396161|ZNF134;nc|ENSG00000213762|P52741-2|ZNF134 8.745405648335112 0.2847203663274469 2 H{[ES]|[DT]|[{I|L}C]} 3 7 14.265 0 0 1.3553 0 0 681.3796328286988 0 681.3796328286988 0 3.8071968632008435 0 0 0 0.3807196863200844 0 0 0 H{[ES]|[DT]|[{I|L}C]} 1.3553 - 3 NaN NaN 117743.4 NaN 3353 2099 5449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5455 34.297 NaN 46146 35 0 8425.4 0.261 + 22941 QYVAMFTNI 9 30 543.7691862250202 NaN 0 543.7692260742188 PEAK HCD FTMS 0 0 0 5449 6772.994140625 0.5595687230630422 1 -0.023265838623046875 6 Unmodified _QYVAMFTNI_ ENST00000252108.7_1_11:118268072-118268138:+|nuORF 1.6526216038709556 0.28723846860855273 2 N 1 8 5.4846 0 0 0.50524 0 0 478.2225632685966 490.2329195611938 968.4554828297904 0 0 0 0 0 0 0 0 0 + N 0.50524 + + 2 + NaN NaN 104022.2 NaN 3354 2099 5449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5457 34.302 NaN 133670 35 0 27734 0.327 + 31090 VTESANQLTQR 11 53 416.21771802495607 1245.6313246750683 3 416.2173156738281 MULTI HCD FTMS 0 0 0 5456 27739.111328125 0.09491199898763564 8 -0.17584609985351562 1 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 7.945399516374404 0.3840748433199446 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}AQ{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 10 -1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}A + + 24.309 -5.027 -0.83606 1.9515 1.9515 59.753 0 0 0 0 20.329693599488294 0 0 0 0.9247425010840047 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}AQ{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 1.9515 - 28 + NaN NaN 107041.4 NaN 3355 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5458 34.307 NaN 93020 35 0 15419 0.261 -1 VAAPADPEM 9 30 458.70783463217634 915.4011163311527 2 458.70745849609375 MULTI HCD FTMS 0 0 0 5456 30686.736328125 0.5553581661526507 -3 0.08079147338867188 2 Oxidation (M) _VAAPADPEM(Oxidation (M))_ ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 26.88365393820708 0.12808753336095696 2 {[VA]|[{I|L}G]}A[PA]D[EP]{M(Oxidation (M))|F} 9 -1 + 34.371 0 0 3.7547 3.7547 83.336 0 0 0 6.47817481888638 13.467874862246568 6.47817481888638 6.47817481888638 0 1.4247425010840047 0 0 0 {[VA]|[{I|L}G]}A[PA]D[EP]{M(Oxidation (M))|F};[Q{I|L}][PA]D[EP]{M(Oxidation (M))|F};[VP]{[NV]|[RG]}D[EP]{M(Oxidation (M))|F};[VP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 3.7547;3.047;1.9796;0.26919 +;-;-;- + 30 NaN NaN 96302.2 NaN 3356 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5459 34.31 NaN 171550 35 0 45418 0.261 -1 MECHSWSF 8 30 521.691377797639 1041.368202662078 2 521.69140625 MULTI HCD FTMS 0 0 0 5456 12725.3896484375 0.45110973113154507 6 -0.12615966796875 3 Oxidation (M) _M(Oxidation (M))ECHSWSF_ ENST00000606930.1_1_5:150891787-150892117:+|nuORF 5.230669730166228 0.5342319408533849 2 S{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.8691 0 0 789.2571319607092 0 789.2571319607092 0 17.870156338638594 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 1.8691 + + 5 + NaN NaN 114909.4 NaN 3357 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5460 34.314 NaN 142660 35 0 46627 0.261 -1 LMTRRGRMAA 10 27 597.8131771484126 1193.611801363625 2 597.8129272460938 MULTI HCD FTMS 0 0 0 5456 36431.8046875 0.039620181869431025 -7 0.19044876098632812 4 2 Oxidation (M) _LM(Oxidation (M))TRRGRM(Oxidation (M))AA_ ENST00000406644.7_1_22:41792013-41792211:+|nuORF 5.731851221503515 0.44496410492002586 2 KA 2 -1 13.583 0 0 1.138 0 0 504.2259942034539 487.23081384830317 991.4568080517571 0 0 0 0 0 0.5 0 0 0 KA 1.138 - 9 + NaN NaN 108694.9 NaN 3358 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5461 34.317 NaN 211550 35 0 42709 0.261 + 3901 EPQKEINSL 9 38 529.279772741876 1056.5449925505518 2 529.279296875 MULTI HCD FTMS 0 0 0 5456 49480.8046875 0.1549218510363195 -6 0.17386627197265625 5 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 16.149105407346934 0.22083165093524068 2 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 8 4 34.258 0 0 3.2424 0 0 149.10679341245776 0 149.10679341245776 0 9.820618910682484 0 0 0 0 0 0.4247425010840047 0.7614393726401688 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 3.2424 - 173 + NaN NaN 119478.8 NaN 3359 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5462 34.32 NaN 82202 35 0 14777 0.263 -1 FDMSHDFFF 9 34 403.4953467136294 1207.4642107410882 3 403.8294677734375 MULTI HCD FTMS 0 0 0 5456 19720.734375 0.8571165175776942 -3 0.08079147338867188 6 Oxidation (M) _FDM(Oxidation (M))SHDFFF_ nc|ENSG00000171466|Q6V9R5-2|ZNF562 2.9952420565917617 0.3283108881486655 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.4071 0 0 1042.385244531907 0 1042.385244531907 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4071 + + 5 + NaN NaN 100119.1 NaN 3360 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5463 34.324 NaN 10909 35 0 3963.5 0.261 -1 QLFSCWFHL 9 10 619.2943660302975 1236.574179127395 2 619.2952270507812 MULTI HCD FTMS 0 0 0 5456 4775.59326171875 0.03873119502066907 17 -0.3480644226074219 7 Carbamidomethyl (C) _QLFSC(Carbamidomethyl (C))WFHL_ ENST00000374875.5_1_10:33468482-33468866:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96733.9 NaN 3361 2100 5456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5465 34.329 NaN 240640 35 0 17697 0.327 + 22613 QVANSAFVER 10 62 560.7907120370812 1119.5668711409623 2 560.790771484375 MULTI HCD FTMS 0 0 0 5464 97164.5234375 0.44529668749099977 3 -0.0531005859375 1 Unmodified _QVANSAFVER_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000183199|Q58FF7|HSP90AB3P 11.517880264261096 0.4033776509493788 2 VHNTMER 7 6 24.756 0 0 2.2112 0 0 234.15130476128962 0 234.15130476128962 0 5.547543116836774 0 0 0 0 0 0 0 VHNTMER 2.2112 - 646 + NaN NaN 142635.7 NaN 3362 2101 5464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5466 34.333 NaN 145490 35 0 15003 0.261 -1 SADMSHVAL 9 39 473.71869594825824 945.4228389633165 2 473.7184753417969 MULTI HCD FTMS 0 0 0 5464 112432.625 0.7981788841250467 7 -0.14923477172851562 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 36.12702656103203 0.08312389501731911 2 VA{I|L} 3 -1 28.188 0 0 2.9815 0 0 644.221971580275 0 644.221971580275 0 4.4897000433601875 0 0 0 0.5 0 0 0 VA{I|L} 2.9815 + + 14 NaN NaN 104077.6 NaN 3363 2101 5464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5467 34.337 NaN 8173.3 35 0 4794 0.261 + 3210 EDERSQDRGGE 11 5 639.2711791992188 NaN 0 639.2711791992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EDERSQDRGGE_ REV__ENST00000486499.1_1_16:31094827-31095232:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97965.2 NaN 3364 2101 5464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5469 34.342 NaN 441940 35 0 84512 0.327 + 25990 SPDSGVYEM 9 61 500.7001596945378 999.3857664558756 2 500.699951171875 MULTI HCD FTMS 0 0 0 5468 196457.9375 0.5011042116591934 -4 0.097381591796875 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 103.74828524460852 0.00396301343438984 2 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 74.037 0 0 7.4083 7.4083 96.146 0 0 0 5.379843084310707 55.62076781845421 5.379843084310707 74.03714289750171 0 2.6307196863200843 0 1.7095083459089813 0 [DP]SSGVYE{M(Oxidation (M))|F} 7.4083 - 224 NaN NaN 157410 NaN 3365 2102 5468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5470 34.347 NaN 125960 35 0 28828 0.261 + -1 WWPCMWCPE 9 42 627.2329486986955 1252.451344464191 2 627.2334594726562 MULTI HCD FTMS 0 0 0 5468 83382.671875 0.7581868583895937 -3 0.06316757202148438 2 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F}PP 3 -1 23.188 0 0 1.8514 0 0 0 908.2913912408811 908.2913912408811 12.218487496163561 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}PP 1.8514 - 7 + NaN NaN 113784.3 NaN 3366 2102 5468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5471 34.35 NaN 51914 35 0 6477.9 0.261 -1 RYMEVSGNL 9 16 542.7581188462589 1083.5016847593176 2 542.7583618164062 MULTI HCD FTMS 0 0 0 5468 22846.521484375 0.1255411696321669 -6 0.1573486328125 3 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 10.799506525563784 0.2670509983294061 2 SGN{I|L} 4 -1 36.938 0 0 3.4092 0 0 694.3108411832285 0 694.3108411832285 0 30.996075289514096 0 0 0 0.5 0 0 0 SGN{I|L} 3.4092 + + 15 NaN NaN 98318.3 NaN 3367 2102 5468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5472 34.353 NaN 16683 35 0 4559.7 0.261 + 22605 QTWMRRHR 8 15 585.8072567230048 1169.5999605128095 2 585.80712890625 MULTI HCD FTMS 0 0 0 5468 10979.7587890625 0.2897022336342439 8 -0.18561553955078125 4 Unmodified _QTWMRRHR_ nc|ENSG00000197275|Q9Y620-2|RAD54B 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83539.4 NaN 3368 2102 5468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5474 34.359 NaN 174640 35 0 35033 0.326 + 9697 HVTQEDFEM 9 32 576.2374500618795 1150.4603471905589 2 576.2374267578125 MULTI HCD FTMS 0 0 0 5473 87856.1796875 0.7656681027380677 4 -0.09952163696289062 1 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 71.70789743142352 0.008535567138151097 2 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 88.95 0 0 7.7317 7.7317 91.616 0 0 0 62.92464714820923 16.478174818886373 16.478174818886373 9.208187539523749 0 2.4247425010840047 0 1.610924374808178 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[DP][RP]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7.7317;6.9313;5.8597 +;-;- + 96 + NaN NaN 120922.2 NaN 3369 2103 5473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5475 34.363 NaN 58016 35 0 5571.3 0.261 -1 SGMCPPPGGM 10 32 511.6910532515173 1021.3675535698346 2 511.6907653808594 MULTI HCD FTMS 0 0 0 5473 31202.974609375 0.6738755870182321 -4 0.07976913452148438 2 Carbamidomethyl (C),2 Oxidation (M) _SGM(Oxidation (M))C(Carbamidomethyl (C))PPPGGM(Oxidation (M))_ ARID1A|p.G1298Efs*15|1|0.07|ENSG00000117713|chr1:26773605-26773633|GGAAACATGAGCACTGGGGCCCCACAGCC/-|frameshift_variant;ARID1A|p.G922Afs*2|1|0.16|ENSG00000117713|chr1:26766249-26766249|G/-|frameshift_variant;ARID1A|p.V1271Efs*21|1|0.06|ENSG00000117713|chr1:26773433-26773434|-/AGGAAATG|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A 3.944395688203298 0.4544253912184634 2 SPDSR 5 -1 44.508 0 0 4.3577 0 0 0 476.11225305728755 476.11225305728755 24.023722004121453 0 0 0 0 0.805462187404089 0 0 0 SPDSR 4.3577 - 14 + NaN NaN 98611.6 NaN 3370 2103 5473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5476 34.367 NaN 128240 35 0 16715 0.261 + -1 GDDLFGDEM 9 41 507.6896211225386 1013.3646893118772 2 507.68963623046875 MULTI HCD FTMS 0 0 0 5473 34205.69140625 0.5000074230342691 -4 0.07976913452148438 3 Oxidation (M) _GDDLFGDEM(Oxidation (M))_ REV__ENSG00000113742|ENST00000265085|CPEB4;REV__nc|ENSG00000113742|Q17RY0-2|CPEB4;REV__nc|ENSG00000113742|Q17RY0-3|CPEB4 11.640296217721598 0.25978676193971967 2 E{M(Oxidation (M))|F} 2 -1 33.583 0 0 3.3141 0 0 719.2765373116804 0 719.2765373116804 0 31.989700043360187 0 0 0 1 0 0.5 0 E{M(Oxidation (M))|F} 3.3141 + + 8 + NaN NaN 94909.9 NaN 3371 2103 5473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5477 34.37 NaN 62455 35 0 10724 0.261 + 8513 HAGRFYKLYY 10 27 439.89590635723135 1316.665889671894 3 439.89581298828125 MULTI HCD FTMS 0 0 0 5473 16675.37890625 0.6730892079153984 -5 0.113983154296875 4 Unmodified _HAGRFYKLYY_ REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant 1.9063754702782614 0.46521295622613185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 91566.9 NaN 3372 2103 5473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5478 34.373 NaN 208670 35 0 62900 0.261 + 31941 VYPARTQTL 9 34 524.7930109315968 1047.5714689299934 2 524.7928466796875 MULTI HCD FTMS 0 0 0 5473 34003.0078125 0.054608277481066704 -7 0.1739501953125 5 Unmodified _VYPARTQTL_ ENSG00000198502|ENST00000374975|HLA-DRB5 14.838274106304384 0.23215694253501695 2 [YV]MV 4 7 38.188 0 0 3.6453 0 0 0 552.3078940611059 552.3078940611059 27.284700126913393 0 0 0 0 0.5 2 0 0 [YV]MV 3.6453 - 34 NaN NaN 122950 NaN 3373 2103 5473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5479 34.377 NaN 80001 35 0 9592 0.261 + 19236 NKNENQSF 8 36 490.7250624158936 979.4355718985872 2 490.7243347167969 MULTI HCD FTMS 0 0 0 5473 15426.1669921875 0.4398030335293261 -4 0.07976913452148438 6 Unmodified _NKNENQSF_ REV__ENSG00000174738|ENST00000312521|NR1D2;REV__ENST00000492552.5_1_3:23987629-24018907:+|nuORF 7.289230182591677 0.5311777711368266 2 S{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.1619 0 0 727.3249894784685 0 727.3249894784685 0 30.255762612236904 0 0 0 1 0 0 0 S{M(Oxidation (M))|F} 3.1619 + + 6 + NaN NaN 102630.2 NaN 3374 2103 5473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5481 34.382 NaN 638450 35 0 269850 0.327 + 30674 VPEEKAAEL 9 58 493.2637122116489 984.5128714900978 2 493.263671875 MULTI HCD FTMS 0 0 0 5480 394542.6875 0.7965112996283917 3 -0.07631301879882812 1 Unmodified _VPEEKAAEL_ ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23 55.23464941255904 0.024247875903973527 2 VPEE 4 5 72.339 0 0 7.3477 0 0 0 527.2819918268186 527.2819918268186 38.72863372572822 0 0 0 0 1.2302046884880937 1.6989700043360187 1.110924374808178 0 + VPEE 7.3477 + + 697 + NaN NaN 181470.8 NaN 3375 2104 5480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5482 34.386 NaN 165740 35 0 16606 0.261 + 31086 VTESANQLTQR 11 40 623.8231175259798 1245.6316821187595 2 623.8228759765625 MULTI HCD FTMS 0 0 0 5480 92578.03125 0.06365495451561506 12 -0.2551116943359375 2 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 36.39500950444726 0.16016733442035713 2 TAAQ{I|L}TQR 8 -1 100.87 0 0 8.098 0 0 358.14875991035314 0 358.14875991035314 0 74.41753481464637 0 0 0 3.4247425010840047 0 2.3283409326844264 0 TAAQ{I|L}TQR 8.098 - 309 NaN NaN 104088.8 NaN 3376 2104 5480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5483 34.39 NaN 687520 35 0 71287 0.261 + 1545 AYVHMVTHF 9 84 560.7657245106487 1119.5168960880974 2 560.7656860351562 MULTI HCD FTMS 0 0 0 5480 203681.21875 0.1877867379867235 -5 0.10297775268554688 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 109.62928328672726 0.0030029239606406397 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 94.792 0 0 8.4672 8.4672 89.98 0 0 0 4.503435819718732 15.145928556591329 4.503435819718732 4.503435819718732 0 3 2 1 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DS]|[MA]|[CV]|TT}N[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}AQ{[RE]|[WV]};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}AY[H{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DS]|[MA]|[CV]|TT}NH[PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}AAG{[RE]|[WV]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}AA;{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F} 8.4672;8.0649;5.7452;5.4465;4.9904;4.8303;4.7215;4.6516;4.6287;4.5842 +;-;-;-;-;-;-;-;-;- + 2266 NaN NaN 181884.9 NaN 3377 2104 5480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5484 34.393 NaN 32305 35 0 4131.4 0.262 -1 LGACVCVC 8 24 469.69854706174544 NaN 0 469.69866943359375 PEAK HCD FTMS 0 0 0 5480 7156.4189453125 0.4693867524865766 1 -0.019908905029296875 4 3 Carbamidomethyl (C) _LGAC(Carbamidomethyl (C))VC(Carbamidomethyl (C))VC(Carbamidomethyl (C))_ ENST00000498707.5_1_3:64502565-64502754:-|nuORF 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92247.6 NaN 3378 2104 5480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5485 34.397 NaN 94720 35 0 6724.2 0.261 -1 FPDPEKPCKMC 11 41 437.5237689412435 1309.5494774239305 3 437.5238037109375 MULTI HCD FTMS 0 0 0 5480 12574.1083984375 0.10021669130958306 -14 0.3565254211425781 5 Oxidation (M) _FPDPEKPCKM(Oxidation (M))C_ ENSG00000198356|ENST00000357332|GET3 3.8459078486920597 0.402053821155582 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100853.4 NaN 3379 2104 5480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5487 34.402 NaN 76400 35 0 15710 0.327 -1 FPDSEPPRM 9 29 546.2449526635525 1090.4753523939048 2 546.2449340820312 MULTI HCD FTMS 0 0 0 5486 40954.44140625 0.7296420136692826 22 -0.5009002685546875 1 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 32.78568957990786 0.09846250359632436 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DSERDP 8 -1 60.411 0 0 5.5399 0 0 0 144.04640841957078 144.04640841957078 60.411159568492465 0 0 0 0 0.5 2 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DSERDP 5.5399 - 79 NaN NaN 97917.4 NaN 3380 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5488 34.406 NaN 182950 35 0 20165 0.263 -1 RYVRKFVLM 9 45 409.90584316911765 1226.695700107553 3 409.9056396484375 MULTI HCD FTMS 0 0 0 5486 47093.7890625 0.22818858839961043 18 -0.3946533203125 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.897010918128616 0.31389406404703984 2 {I|L}{M(Oxidation (M))|F} 2 -1 27.351 0 0 2.2297 0 0 948.5665516222246 0 948.5665516222246 0 11.866654986684733 0 0 0 0.7887254899964358 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2297 + + 25 NaN NaN 109342.5 NaN 3381 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5489 34.41 NaN 63724 35 0 6689.8 0.261 + 2193 DIHGPDAKL 9 27 483.2565205172387 964.4984881012774 2 483.2567443847656 MULTI HCD FTMS 0 0 0 5486 22398.99609375 0.41331768041580424 2 -0.05640411376953125 3 Unmodified _DIHGPDAKL_ ENSG00000124942|ENST00000378024|AHNAK 18.373094154950223 0.20161688160436167 2 AK{I|L} 3 6 28.188 0 0 2.9225 0 0 634.271932963089 0 634.271932963089 0 -2.2577249674798594 -2.2577249674798594 0 0 0.5 0 0 0 + AK{I|L} 2.9225 + + 20 NaN NaN 113878.6 NaN 3382 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5490 34.413 NaN 37386 35 0 3436.8 0.261 + 16409 LSKILRAKKHK 11 35 441.29757465645827 NaN 0 441.2976379394531 PEAK HCD FTMS 0 0 0 5486 16279.3671875 0.41801982132601034 310 -7.865489959716797 4 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79871.8 NaN 3383 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5491 34.416 NaN 101320 35 0 14135 0.261 + -1 PMERPIAAY 9 39 532.265574738419 1062.516596543638 2 532.264892578125 MULTI HCD FTMS 0 0 0 5486 22946.201171875 0.5257216400089998 -4 0.07300949096679688 5 Oxidation (M) _PM(Oxidation (M))ERPIAAY_ REV__ENSG00000176903|ENST00000316836|PNMA1 10.823927491677226 0.26684000660059787 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EKE{I|L} 6 -1 61.159 0 0 5.756 0 0 0 316.13784833490666 316.13784833490666 54.16895006820745 0 0 0 0 2.4247425010840047 0 0.8494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EKE{I|L} 5.756 - 70 NaN NaN 98530.3 NaN 3384 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5492 34.42 NaN 36055 35 0 5910.6 0.261 + -1 YYLLNDVY 8 26 552.765959990644 1103.5173670480879 2 553.267578125 MULTI HCD FTMS 0 0 0 5486 10581.0419921875 0.15753301232908484 55 -1.3304481506347656 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YYLLNDVY_ REV__ENST00000515204.1_1_4:170653040-170653088:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96000.5 NaN 3385 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5493 34.423 NaN 41129 35 0 5246.8 0.261 -1 RFHCKRID 8 32 566.2936178430806 NaN 0 566.2941284179688 PEAK HCD FTMS 0 0 0 5486 12580.658203125 0.9663011813353604 -1 0.019908905029296875 7 Carbamidomethyl (C) _RFHC(Carbamidomethyl (C))KRID_ ENSG00000154478|ENST00000284674|GPR26;GPR26|p.V277Cfs*33|1|0.2|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant 2.302733041254933 0.38822285293237185 2 Y 1 -1 3.9794 0 0 0.35198 0 0 583.3008454500299 381.18857752017817 964.4894229702081 0 0 0 0 0 0 0 0 0 Y 0.35198 - 1 + NaN NaN 94130.1 NaN 3386 2105 5486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5495 34.428 NaN 670670 35 0 283030 0.327 + 2660 DVFRDPALKR 10 42 406.2316275455635 1215.6730532368906 3 406.23150634765625 MULTI HCD FTMS 0 0 0 5494 252583.78125 0.8240782051820589 1 -0.029865264892578125 1 Unmodified _DVFRDPALKR_ ENSG00000131469|ENST00000253788|RPL27 22.10888232116614 0.3043129911316316 2 DV 2 8 41.454 0 0 3.4099 0 0 0 998.553966105727 998.553966105727 7.028937514676485 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + DV 3.4099 + + 24 + NaN NaN 179204.1 NaN 3387 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5496 34.433 NaN 70617 35 0 14951 0.261 -1 YTCGDCGKTF 10 24 604.7389554518342 1207.4633579704682 2 604.7392578125 MULTI HCD FTMS 0 0 0 5494 37401.2265625 0.6940043697124982 5 -0.129180908203125 2 2 Carbamidomethyl (C) _YTC(Carbamidomethyl (C))GDC(Carbamidomethyl (C))GKTF_ ENSG00000182903|ENST00000511833|ZNF721;nc|ENSG00000182903|Q8TF20|ZNF721 2.9952420565917617 0.4594494122822477 2 T{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.0884 0 0 941.3375111310562 0 941.3375111310562 0 8.762874945799766 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.0884 + + 6 NaN NaN 117095.9 NaN 3388 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5497 34.436 NaN 220460 35 0 26210 0.264 + -1 CLCMFLATCL 10 49 416.5148401120525 1246.5226909363575 3 416.5146179199219 MULTI HCD FTMS 0 0 0 5494 60027.421875 1 0 0 3 2 Carbamidomethyl (C),Oxidation (M) _CLC(Carbamidomethyl (C))M(Oxidation (M))FLATC(Carbamidomethyl (C))L_ REV__ENST00000397420.7_1_11:838351-838822:+|nuORF 1.5922808571145555 0.4668755089467872 2 C{I|L} 2 -1 20.969 0 0 1.6822 0 0 0 1027.4114585036139 1027.4114585036139 0 0 0 0 0 0 0 0 0 C{I|L} 1.6822 + + 7 + NaN NaN 118308.1 NaN 3389 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5498 34.44 NaN 43280 35 0 6779.4 0.261 + 20834 PHVDEFLQR 9 24 570.7937226811578 1139.5728924291154 2 570.7941284179688 MULTI HCD FTMS 0 0 0 5494 13327.69921875 0.41456539169965456 -2 0.04644775390625 4 Unmodified _PHVDEFLQR_ ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000144677|ENST00000273179|CTDSPL;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL 6.723162845929126 0.3000504726104499 2 HPV 3 8 31.198 0 0 2.7377 0 0 0 803.3690350694392 803.3690350694392 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.7377 - 6 + NaN NaN 83237.7 NaN 3390 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5499 34.443 NaN 13490 35 0 3153.2 0.261 + -1 TPPTCTTWEDA 11 14 639.769775390625 NaN 0 639.769775390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _TPPTC(Carbamidomethyl (C))TTWEDA_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 1.1933415558491238 0.338734977139133 2 E 1 -1 3.9794 0 0 0.31149 0 0 976.7635857404313 168.69899927310783 1145.4625850135392 0 0 0 0 0 0 0 0 0 E 0.31149 + + 1 + NaN NaN 90302.5 NaN 3391 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5500 34.446 NaN 25655 35 0 4137.5 0.264 + 7925 GAYHRLQL 8 19 479.2663127584408 956.5180725836816 2 479.26580810546875 MULTI HCD FTMS 0 0 0 5494 7084.330078125 0.31217170103242287 6 -0.14901351928710938 6 Unmodified _GAYHRLQL_ ENST00000263269.3_1_19:48917790-48922905:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89242.7 NaN 3392 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5501 34.45 NaN 56996 35 0 5103.3 0.261 + 9708 HVVPNEVVVQR 11 45 425.91053571475425 1274.7097777444628 3 426.51593017578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HVVPNEVVVQR_ CON__Q3SX14;ENSG00000148180|ENST00000432226|GSN;ENST00000485767.1_1_9:124072835-124073156:+|nuORF;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396|GSN 3.5926746625661337 0.403164415885289 2 V 1 10 11.99 0 0 0.94058 0 0 500.30662949874346 672.3101290338499 1172.6167585325934 0 0 0 0 0 0.5 0 0 0 + V 0.94058 + + 3 + NaN NaN 94283.2 NaN 3393 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5502 34.453 NaN 21798 35 0 4146.8 0.261 + 25648 SHFLFQMNFS 10 18 629.2898003037201 1256.56504767424 2 629.2906494140625 MULTI HCD FTMS 0 0 0 5494 2502.4755859375 0.13240102583688707 -2 0.04644775390625 8 Unmodified _SHFLFQMNFS_ REV__ENSG00000197472|ENST00000339986|ZNF695;REV__nc|ENSG00000197472|Q8IW36-1|ZNF695;REV__nc|ENSG00000197472|Q8IW36-2|ZNF695;REV__nc|ENSG00000197472|Q8IW36-3|ZNF695 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95795.5 NaN 3394 2106 5494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5504 34.458 NaN 1822300 35 0 540480 0.326 + 24499 RYLEKPMEI 9 99 597.8131771484126 1193.611801363625 2 597.813232421875 MULTI HCD FTMS 0 0 0 5503 919526.4375 1 0 0 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 97.74103586103693 0.004323122048066454 2 [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L} 9 0 + 77.208 0 0 6.4684 6.4684 87.365 0 0 0 5.629005157155831 32.523656471886326 5.629005157155831 6.505149978319906 0 2.079689690656103 0 0.9291746928241125 0.6307196863200843 + + [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}EKPE{M(Oxidation (M))|F}{I|L};[YR]{I|L}EKEP{M(Oxidation (M))|F}{I|L};[YR]{I|L}EKPE{I|L}{M(Oxidation (M))|F};[YR]{I|L}EKE{I|L}P{M(Oxidation (M))|F};[YR]{I|L}EKEP{I|L}{M(Oxidation (M))|F};[VP][HV]EKP{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}EK{I|L}EP{M(Oxidation (M))|F};[VP][HV]EKPE{M(Oxidation (M))|F}{I|L} 6.4684;5.9234;5.6045;5.2295;5.1605;4.9105;4.8795;4.7533;4.583;4.3345 +;-;-;-;-;-;-;-;-;- + 7577 NaN NaN 370876.2 NaN 3395 2107 5503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5505 34.463 NaN 615220 35 0 128170 0.261 + 3902 EPQKEINSL 9 58 529.279772741876 1056.5449925505518 2 529.2798461914062 MULTI HCD FTMS 0 0 0 5503 280169.84375 0.8771973510218878 1 -0.0198211669921875 2 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 41.8396318013385 0.056899836730939755 2 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 8 4 51.564 0 0 4.8805 0 0 149.10561679361302 0 149.10561679361302 0 20.775983264404502 0 0 0 0 0 1.4876954943324545 1.4291746928241125 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 4.8805 - 239 + NaN NaN 190947.5 NaN 3396 2107 5503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5506 34.466 NaN 68063 35 0 9049.2 0.261 -1 VAAPADPEM 9 35 458.70783463217634 915.4011163311527 2 458.7076721191406 MULTI HCD FTMS 0 0 0 5503 22681.248046875 0.41047754921468166 4 -0.09931564331054688 3 Oxidation (M) _VAAPADPEM(Oxidation (M))_ ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 15.847184025352803 0.2234401846867398 2 [Q{I|L}][PA]D[EP]{M(Oxidation (M))|F} 8 -1 + 26.655 0 0 2.9119 2.9119 88.156 0 0 0 9.665762445130497 13.187587626244124 9.665762445130497 26.655462488490684 0 1 0 0 0 [Q{I|L}][PA]D[EP]{M(Oxidation (M))|F} 2.9119 - 9 + NaN NaN 96496.5 NaN 3397 2107 5503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5507 34.47 NaN 74156 35 0 11798 0.261 -1 SSGPVDPMM 9 31 476.6911297716007 951.3677066100014 2 476.69091796875 MULTI HCD FTMS 0 0 0 5503 15878.0322265625 0.08826089092950326 41 -0.9297409057617188 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 2 D 1 -1 14.732 0 0 1.5485 0 0 427.20652524116025 406.1112459772094 833.3177712183697 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 4 + NaN NaN 85146.3 NaN 3398 2107 5503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5508 34.473 NaN 44459 35 0 7757.7 0.261 + 34897 YSGKKYTE 8 21 488.2430141163313 NaN 0 488.24310302734375 PEAK HCD FTMS 0 0 0 5503 12855.3271484375 0.8328627708075473 -8 0.179290771484375 5 Unmodified _YSGKKYTE_ REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|44|2|anti-sense 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97831.5 NaN 3399 2107 5503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5510 34.478 NaN 718870 35 0 138910 0.327 + 25991 SPDSGVYEM 9 72 500.7001596945378 999.3857664558756 2 500.7001647949219 MULTI HCD FTMS 0 0 0 5509 302304.1875 0.7710856760799522 2 -0.049671173095703125 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 103.74828524460852 0.00396301343438984 2 [DP]SSGVYE{M(Oxidation (M))|F} 9 2 + 86.283 0 0 8.6336 8.6336 97.98 0 0 0 8.569233304795034 67.77101595049125 8.569233304795034 70.23554946258571 0 2.6747425010840047 0 1.872363747448347 0 [DP]SSGVYE{M(Oxidation (M))|F};[DP][KP]{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.6336;1.6058 -;- 414 NaN NaN 197324.7 NaN 3400 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5511 34.482 NaN 318780 35 0 81597 0.262 + -1 EEYRMIRMN 9 39 419.8618756095399 1256.5637974288197 3 419.86181640625 MULTI HCD FTMS 0 0 0 5509 88323.625 1 0 0 2 Oxidation (M) _EEYRM(Oxidation (M))IRMN_ REV__ENSG00000197953|ENST00000356517|AADACL2 1.1933415558491238 0.3419706357095994 2 {[CP]|[EA]}{I|L}YD 5 -1 22.218 0 0 1.7682 0 0 0 662.2858686234854 662.2858686234854 10.228787452803374 0 0 0 0 0 0 0 0 {[CP]|[EA]}{I|L}YD 1.7682 - 28 + NaN NaN 131470.3 NaN 3401 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5512 34.486 NaN 106030 35 0 30251 0.261 + -1 PMACENIDQC 10 30 627.2329486986955 1252.451344464191 2 627.2332763671875 MULTI HCD FTMS 0 0 0 5509 69846.453125 0.6351039331515757 3 -0.07949447631835938 3 2 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))AC(Carbamidomethyl (C))ENIDQC(Carbamidomethyl (C))_ REV__ENSG00000168056|ENST00000301873|LTBP3;REV__LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3 1.4819007175156935 0.4674597685733628 2 ES 2 -1 10.969 0 0 0.87581 0 0 591.1672390948535 442.18796716861567 1033.3552062634692 0 0 0 0 0 0 0 0 0 ES 0.87581 - 5 + NaN NaN 99641.1 NaN 3402 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5513 34.489 NaN 53355 35 0 11763 0.261 + -1 MRPFRQSRD 9 23 604.8024632768718 1207.5903736205435 2 604.8026733398438 MULTI HCD FTMS 0 0 0 5509 25358.845703125 0.9982282309202881 -1 0.0198211669921875 4 Oxidation (M) _M(Oxidation (M))RPFRQSRD_ REV__ENSG00000198300|ENST00000326441|PEG3;REV__nc|ENSG00000198300|Q9GZU2-2|PEG3;REV__nc|ENSG00000198300|Q9GZU2-3|PEG3;REV__nc|ENSG00000198300|Q9GZU2-4|PEG3;REV__PEG3|p.I648Sfs*90|1|0.24|ENSG00000198300|chr19:56816504-56816504|C/-|frameshift_variant;REV__PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant 3.5964929083625545 0.32375295897743744 2 R 1 -1 5.9691 0 0 0.4943 0 0 504.2257628801122 544.2304171197874 1048.4561799998996 0 0 0 0 0 0.3494850021680094 0 0 0 R 0.4943 + + 1 + NaN NaN 89881.1 NaN 3403 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5514 34.493 NaN 16580 35 0 5683 0.261 -1 EMAHTCRGTI 10 12 567.7552316263057 1133.4959103194112 2 567.7555541992188 MULTI HCD FTMS 0 0 0 5509 12625.8681640625 0.8964610804691842 1 -0.0298004150390625 5 Oxidation (M) _EM(Oxidation (M))AHTCRGTI_ ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 83466 NaN 3404 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5515 34.496 NaN 68192 35 0 20367 0.261 -1 MICDARIYS 9 25 564.7619075437884 1127.5092621543768 2 564.7796630859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _MIC(Carbamidomethyl (C))DARIYS_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 1.4819007175156935 0.3397831423917744 2 MV 2 -1 20.969 0 0 1.8598 0 0 0 894.3584701611967 894.3584701611967 13.979400086720375 0 0 0 0 0 0 0 0 MV 1.8598 - 3 + NaN NaN 98561.9 NaN 3405 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5516 34.499 NaN 43693 35 0 9441 0.261 -1 RNMMPNCYN 9 24 587.7229614257812 NaN 0 587.7229614257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _RNM(Oxidation (M))M(Oxidation (M))PNCYN_ ENSG00000158352|ENST00000376020|SHROOM4;nc|ENSG00000158352|Q9ULL8-2|SHROOM4;SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104017.2 NaN 3406 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5517 34.503 NaN 30820 35 0 7867.3 0.262 -1 TAEMEHMK 8 19 496.7124623614297 NaN 0 496.58868408203125 PEAK HCD FTMS 0 0 0 5509 2854.37353515625 0.3379428081728905 -2 0.049686431884765625 8 Oxidation (M) _TAEM(Oxidation (M))EHMK_ ENSG00000005059|ENST00000394650|MCUB;ENST00000472310.5_1_4:110481463-110603916:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90332.6 NaN 3407 2108 5509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5519 34.508 NaN 387740 35 0 32772 0.327 + 23961 RVIKNEWYI 9 61 407.56438873600314 1219.6713368082094 3 407.5643310546875 MULTI HCD FTMS 0 0 0 5518 134857.71875 0.6510928513864389 2 -0.049694061279296875 1 Unmodified _RVIKNEWYI_ REV__ENSG00000089234|ENST00000419234|BRAP;REV__nc|ENSG00000089234|Q7Z569-2|BRAP 12.531546534597751 0.2520865569484384 2 WY{I|L} 3 -1 25.177 0 0 2.0643 0 0 739.4315429623094 0 739.4315429623094 0 20.48455006504028 0 0 0 0.5 0 0 0 WY{I|L} 2.0643 + + 49 + NaN NaN 156081.8 NaN 3408 2109 5518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5520 34.512 NaN 286720 35 0 36441 0.261 + 24751 RYMEVSGNL 9 50 542.7581188462589 1083.5016847593176 2 542.75830078125 MULTI HCD FTMS 0 0 0 5518 154365.328125 0.8482343299709496 1 -0.019870758056640625 2 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 49.52724829834842 0.03223213920720493 2 EVSGN{I|L} 6 3 65.75 0 0 6.0683 0 0 466.2001209943375 0 466.2001209943375 0 58.30320662047981 0 0 0 1.8494850021680094 0 0.7614393726401688 0 + EVSGN{I|L} 6.0683 + + 85 NaN NaN 128217.7 NaN 3409 2109 5518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5521 34.516 NaN 134200 35 0 26067 0.261 + 9698 HVTQEDFEM 9 42 576.2374500618795 1150.4603471905589 2 576.2374267578125 MULTI HCD FTMS 0 0 0 5518 94435.4609375 0.8230066509197203 10 -0.18233871459960938 3 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 59.368380827593164 0.01846506874148156 2 QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 70.17 0 0 6.0993 0 0 337.16574377434637 0 337.16574377434637 0 63.18040976044614 0 0 0 2.4247425010840047 0 1.2302046884880937 0 + QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.0993 + + 67 + NaN NaN 108968.4 NaN 3410 2109 5518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5522 34.519 NaN 132850 35 0 16140 0.261 + -1 GDDLFGDEM 9 39 507.6896211225386 1013.3646893118772 2 507.6896057128906 MULTI HCD FTMS 0 0 0 5518 41645.45703125 0.608759443098845 2 -0.049694061279296875 4 Oxidation (M) _GDDLFGDEM(Oxidation (M))_ REV__ENSG00000113742|ENST00000265085|CPEB4;REV__nc|ENSG00000113742|Q17RY0-2|CPEB4;REV__nc|ENSG00000113742|Q17RY0-3|CPEB4 16.942295170755138 0.21397866736869717 2 E{M(Oxidation (M))|F} 2 -1 34.464 0 0 3.4009 0 0 719.2769856972576 0 719.2769856972576 0 33.354706403678875 0 0 0 0.9247425010840047 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 3.4009 + + 7 NaN NaN 106227.8 NaN 3411 2109 5518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5523 34.522 NaN 92395 35 0 13289 0.262 + 11496 IYQRHVYNL 9 28 603.3249331791711 1204.6353134251422 2 603.3247680664062 MULTI HCD FTMS 0 0 0 5518 38684.31640625 0.4927421036107375 -2 0.04962158203125 5 Unmodified _IYQRHVYNL_ ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 43.85829265575387 0.04763305254408404 2 {I|L}Y[KC]H 5 6 34.922 0 0 2.8989 0 0 0 557.2845553033811 557.2845553033811 13.979400086720375 0 0 0 0 0 1.5228787452803376 0 0.5 {I|L}Y[KC]H 2.8989 - 30 + NaN NaN 102887.7 NaN 3412 2109 5518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5525 34.528 NaN 1905800 35 0 214300 0.327 + 1546 AYVHMVTHF 9 106 560.7657245106487 1119.5168960880974 2 560.7660522460938 MULTI HCD FTMS 0 0 0 5524 1032070.4375 0.9515317220707449 1 -0.02982330322265625 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 116.77 0 0 10.43 10.43 96.21 0 0 0 82.5733095634252 12.587418566968154 12.587418566968154 13.100956278032555 0 3.079689690656103 2 0.8171028087033153 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DS]|[MA]|[CV]|TT}NAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[DS]|[MA]|[CV]|TT}GGAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[HT]V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F} 10.43;9.2601;9.2478;7.3545;6.7039;6.5434;6.5359;6.3798;6.2811;6.2563 +;+;-;-;-;-;-;-;-;- + 6900 + NaN NaN 392989.8 NaN 3413 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5526 34.532 NaN 1364500 35 0 444270 0.261 + 31942 VYPARTQTL 9 64 524.7930109315968 1047.5714689299934 2 524.7930297851562 MULTI HCD FTMS 0 0 0 5524 622671.3125 1 0 0 2 Unmodified _VYPARTQTL_ ENSG00000198502|ENST00000374975|HLA-DRB5 71.70789743142352 0.008535567138151097 2 [YV]PARTQT{I|L} 9 0 + 62.367 0 0 5.9535 5.9535 85.063 0 0 0 2.8258344212375235 2.8258344212375235 2.8258344212375235 2.8258344212375235 0 1.8098943791441968 1.6989700043360187 0.4247425010840047 0 + + [YV]PARTQT{I|L};VYPARTQT{I|L};[YV]PART[AG]T{I|L} 5.9535;5.6837;5.0745 +;+;- + 405 NaN NaN 292434.6 NaN 3414 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5527 34.536 NaN 155190 35 0 65807 0.261 -1 GPNILVDDT 9 37 493.24774703551094 NaN 0 493.2637023925781 PEAK HCD FTMS 0 0 0 5524 4935.15185546875 0.5330065462535152 1 -0.02982330322265625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GPNILVDDT_ EFTUD2|p.P751L|1|0.19|ENSG00000108883|chr17:44854563-44854563|G/A|missense_variant;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42931463-42937758:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000590977.5_1_17:42931463-42936567:-|nuORF;nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2 6.723162845929126 0.26266733336404485 2 PEE 3 -1 21.555 0 0 2.1894 0 0 99.03763023862855 527.2811983697874 626.318828608416 0 0 0 0 0 0 0 0.7742275032520141 0 PEE 2.1894 - 10 + NaN NaN 117512.7 NaN 3415 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5528 34.539 NaN 214030 35 0 24485 0.261 -1 FPDPEKPCKMC 11 45 437.5237689412435 1309.5494774239305 3 437.5240478515625 MULTI HCD FTMS 0 0 0 5524 88599.1875 0.7061429043406942 -8 0.18561553955078125 4 Oxidation (M) _FPDPEKPCKM(Oxidation (M))C_ ENSG00000198356|ENST00000357332|GET3 13.534932898082838 0.33915209766063664 2 M{I|L}D[EP]K 6 -1 49.43 0 0 3.7746 0 0 0 593.1850069635374 593.1850069635374 43.94524706148886 0 0 0 0 1.305462187404089 1.3979400086720375 0 0 M{I|L}D[EP]K 3.7746 - 34 + NaN NaN 123990.1 NaN 3416 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5529 34.542 NaN 68444 35 0 17064 0.261 -1 NADPQAVTM 9 34 481.71613286382154 961.4177127944431 2 481.71588134765625 MULTI HCD FTMS 0 0 0 5524 24244.59765625 0.02094600280652585 105 -2.5633201599121094 5 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 11.494710602746466 0.2610445893512368 2 AV[{M(Oxidation (M))|F}T] 4 -1 28.5 0 0 2.9644 0 0 525.2196522443375 0 525.2196522443375 0 21.510234424404686 0 0 0 1.3807196863200843 0 0 0 AV[{M(Oxidation (M))|F}T] 2.9644 + + 16 NaN NaN 91208.6 NaN 3417 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5530 34.546 NaN 46828 35 0 4654.2 0.261 + 27951 TETQALAQRTQ 11 28 623.8231175259798 1245.6316821187595 2 623.8229370117188 MULTI HCD FTMS 0 0 0 5524 32353.822265625 0.022245894159956585 18 -0.3916015625 6 Unmodified _TETQALAQRTQ_ ENSG00000163060|ENST00000295201|TEKT4;ENST00000468063.1_1_2:95537336-95538738:+|nuORF 8.444304893310646 0.381886813817475 2 TAAQ{I|L} 5 7 37.691 0 0 3.0258 0 0 358.144695890047 400.19440637760005 758.339102267647 0 0 0 0 0 1.4247425010840047 0 0 0 TAAQ{I|L} 3.0258 - 28 + NaN NaN 94132.4 NaN 3418 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5531 34.549 NaN 27400 35 0 4306.7 0.262 + -1 DPKHCMEM 8 18 511.6910532515173 1021.3675535698346 2 511.69097900390625 MULTI HCD FTMS 0 0 0 5524 26684.24609375 0.5762867875796066 3 -0.0662078857421875 7 2 Oxidation (M) _DPKHCM(Oxidation (M))EM(Oxidation (M))_ REV__ENSG00000144015|ENST00000272395|TRIM43 2.302733041254933 0.5385759549224092 2 [PS]D 3 -1 14.705 0 0 1.4397 0 0 0 719.2316378229124 719.2316378229124 -1.4928876664371398 0 -1.4928876664371398 0 0 0.4247425010840047 0 0 0 [PS]D 1.4397 - 4 + NaN NaN 85306.6 NaN 3419 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5532 34.552 NaN 54164 35 0 8729.1 0.261 + 8514 HAGRFYKLYY 10 34 439.89590635723135 1316.665889671894 3 440.22991943359375 MULTI HCD FTMS 0 0 0 5524 11249.2001953125 0.5542525791177231 7 -0.12254714965820312 8 Unmodified _HAGRFYKLYY_ REV__ZBTB7A|p.S357R|1|0.32|ENSG00000178951|chr19:4054162-4054162|G/T|missense_variant 1.7422754331352037 0.46608156381052757 2 HA 2 -1 25.217 0 0 1.9152 0 0 0 1105.5492877746735 1105.5492877746735 25.21652514092061 0 0 0 0 0.4247425010840047 0 0 0 HA 1.9152 + + 2 + NaN NaN 95921.4 NaN 3420 2110 5524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5534 34.558 NaN 137410 35 0 15116 0.327 -1 RYVRKFVLM 9 38 409.90584316911765 1226.695700107553 3 409.90594482421875 MULTI HCD FTMS 0 0 0 5533 42523.78515625 0.2060450581993982 24 -0.5210380554199219 1 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 2.735195868890462 0.3302822318919627 2 P{M(Oxidation (M))|F} 2 -1 23.711 0 0 1.9329 0 0 964.5972942011061 0 964.5972942011061 0 13.253800256993953 0 0 0 0.4247425010840047 0 0 0 P{M(Oxidation (M))|F} 1.9329 - 17 + NaN NaN 105825 NaN 3421 2111 5533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5535 34.562 NaN 65584 35 0 13551 0.261 -1 FPDSEPPRM 9 26 546.2449526635525 1090.4753523939048 2 546.2452392578125 MULTI HCD FTMS 0 0 0 5533 24771.265625 0.4413234684969579 28 -0.6345901489257812 2 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}PDRVDD{NN|[MP]|[D{I|L}]|[EV]} 9 -1 + 43.918 0 0 4.0274 4.0274 90.013 0 0 0 38.43326954115149 3.1948095894621176 3.1948095894621176 43.91781960619177 0 1 0 0.3494850021680094 0 {M(Oxidation (M))|F}PDRVDD{NN|[MP]|[D{I|L}]|[EV]} 4.0274 - 36 + NaN NaN 90319.9 NaN 3422 2111 5533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5536 34.566 NaN 148770 35 0 36059 0.261 + 15610 LPEDAGLSLE 10 39 522.2665321372752 1042.5185113413504 2 522.266845703125 MULTI HCD FTMS 0 0 0 5533 40699.05078125 0.1780714868960448 -9 0.2154388427734375 3 Unmodified _LPEDAGLSLE_ ENST00000316757.3_1_19:3760164-3761632:-|nuORF 13.90604991867851 0.3810395177745597 2 {I|L}PE 3 7 35.445 0 0 3.4 0 0 0 700.3164766900999 700.3164766900999 28.455612550363796 0 0 0 0 0.5 0 0.4247425010840047 0 + {I|L}PE 3.4 + + 9 + NaN NaN 128082.7 NaN 3423 2111 5533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5537 34.569 NaN 60771 35 0 7853.5 0.261 + 27874 TDVWFPWL 8 26 532.265574738419 1062.516596543638 2 532.2662963867188 MULTI HCD FTMS 0 0 0 5533 21840.48828125 0.5003885929445053 2 -0.03638458251953125 4 Unmodified _TDVWFPWL_ REV__ENSG00000213920|ENST00000288087|MDP1;REV__ENST00000528804.1_1_14:24683633-24685170:-|nuORF;REV__ENST00000532742.5_1_14:24684941-24685236:-|nuORF;REV__nc|ENSG00000213920|Q86V88-2|MDP1;REV__nc|ENSG00000213920|Q86V88-3|MDP1 5.760428011301431 0.5334459684533844 2 E 1 -1 11.99 0 0 1.1284 0 0 501.22686256152184 429.2251070611938 930.4519696227156 0 0 0 0 0 0.5 0 0 0 E 1.1284 - 4 + NaN NaN 119688.8 NaN 3424 2111 5533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5538 34.572 NaN 84150 35 0 13046 0.261 -1 SSGPVDPMM 9 39 476.6911297716007 951.3677066100014 2 476.691162109375 MULTI HCD FTMS 0 0 0 5533 20780.69140625 0.11551320160305366 45 -1.0653038024902344 5 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 2 D 1 -1 14.292 0 0 1.5022 0 0 409.1365797562889 424.18327047592305 833.3198502322119 0 0 0 0 0 0.8807196863200843 0 0 0 D 1.5022 + + 2 + NaN NaN 111521.2 NaN 3425 2111 5533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5540 34.577 NaN 268130 35 0 44441 0.327 + 7168 FSHPREPAL 9 48 527.2773658163322 1052.5401786994644 2 527.2772827148438 MULTI HCD FTMS 0 0 0 5539 102948.984375 0.7166378034956451 3 -0.0430755615234375 1 Unmodified _FSHPREPAL_ ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1 38.175570920033316 0.07371992880350783 2 HC{I|L} 3 7 30.445 0 0 2.8926 0 0 681.3806529176002 0 681.3806529176002 0 11.773174902439575 0 0 0 0.4247425010840047 0 0 0 HC{I|L} 2.8926 - 44 NaN NaN 134078.9 NaN 3426 2112 5539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5541 34.582 NaN 129490 35 0 37746 0.261 + -1 QLSAMEVW 8 32 490.23114880238603 NaN 0 490.2450866699219 PEAK HCD FTMS 0 0 0 5539 1970.5455322265625 0.181512003013808 6 -0.08957672119140625 2 Oxidation (M) _QLSAM(Oxidation (M))EVW_ REV__ENSG00000022556|ENST00000448584|NLRP2;REV__ENST00000540597.5_1_19:55476735-55501561:+|nuORF;REV__nc|ENSG00000022556|Q9NX02-2|NLRP2;REV__nc|ENSG00000022556|Q9NX02-3|NLRP2;REV__nc|ENSG00000022556|Q9NX02-4|NLRP2;REV__NLRP2|p.D64H|1|0.16|ENSG00000022556|chr19:54970205-54970205|G/C|missense_variant 2.302733041254933 0.38822285293237185 2 S 1 -1 4.6041 0 0 0.47055 0 0 164.08942055223457 724.3043917291624 888.393812281397 0 0 0 0 0 0 0 0 0 S 0.47055 + + 1 + NaN NaN 110564 NaN 3427 2112 5539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5542 34.585 NaN 40711 35 0 3765.4 0.261 + 9429 HPVGFHPRHG 10 22 570.7937226811578 1139.5728924291154 2 570.7933959960938 MULTI HCD FTMS 0 0 0 5539 15054.458984375 0.46827720098181747 4 -0.059650421142578125 3 Unmodified _HPVGFHPRHG_ ENST00000374606.9_1_6:33257467-33257957:+|nuORF;ENST00000395131.5_1_6:33257384-33257957:+|nuORF 6.2057823575117 0.44245551207394906 2 HPV 3 7 31.198 0 0 2.7377 0 0 0 803.3676241510374 803.3676241510374 30.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7377 + + 5 + NaN NaN 93856.8 NaN 3428 2112 5539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5543 34.589 NaN 46816 35 0 8127.9 0.261 + 27914 TEHEYIWGA 9 35 553.2519575877388 1104.4893622422776 2 553.2667846679688 MULTI HCD FTMS 0 0 0 5539 5407.4970703125 0.7584521856938309 3 -0.0430755615234375 4 Unmodified _TEHEYIWGA_ REV__ENST00000606208.5_1_20:61640803-61714695:+|nuORF 2.0597508629832335 0.3354026079994024 2 Q[WY] 3 -1 6.9627 0 0 0.6304 0 0 609.2744402225495 0 609.2744402225495 0 3.863781092484688 0 0 0 0 0 0 0 Q[WY] 0.6304 - 5 + NaN NaN 85301.2 NaN 3429 2112 5539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5545 34.594 NaN 633170 35 0 187910 0.327 + 24500 RYLEKPMEI 9 60 597.8131771484126 1193.611801363625 2 597.8131713867188 MULTI HCD FTMS 0 0 0 5544 327838.65625 0.35652988634163113 6 -0.09626007080078125 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 47.594388314883695 0.03493607795751234 2 {I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KE 6 6 41.758 0 0 3.4984 0 0 0 429.2259657515875 429.2259657515875 7.3990938533150725 0 0 0 0 1 0 0.7059771852360797 0.3807196863200844 {I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KE 3.4984 - 292 + NaN NaN 196002.8 NaN 3430 2113 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5546 34.598 NaN 76406 35 0 11092 0.263 -1 SADMSHVAL 9 29 473.71869594825824 945.4228389633165 2 473.7184753417969 MULTI HCD FTMS 0 0 0 5544 47268.8203125 0.3355696289305581 19 -0.4183387756347656 2 Oxidation (M) _SADM(Oxidation (M))SHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 25.399314129420986 0.14091189997036632 2 VA{I|L} 3 -1 27.435 0 0 2.9019 0 0 644.2233143537125 0 644.2233143537125 0 11.977437731477421 0 0 0 0.4247425010840047 0 0 0 VA{I|L} 2.9019 + + 8 NaN NaN 97069.5 NaN 3431 2113 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5547 34.602 NaN 316270 35 0 84017 0.261 + -1 MNKLKMLWL 9 38 403.5554085358405 NaN 0 403.5550842285156 PEAK HCD FTMS 0 0 0 5544 10000.234375 0.48603540058393124 3 -0.04309844970703125 3 2 Oxidation (M) _M(Oxidation (M))NKLKM(Oxidation (M))LWL_ REV__ENSG00000174206|ENST00000398055|KICS2 1.1933415558491238 0.28946407562688115 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 130581.4 NaN 3432 2113 5544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5549 34.607 NaN 304920 35 0 32897 0.327 + 25992 SPDSGVYEM 9 59 500.7001596945378 999.3857664558756 2 500.7001953125 MULTI HCD FTMS 0 0 0 5548 79321.671875 0.20232536469752507 8 -0.15608596801757812 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 71.13359017698441 0.008721403657255008 2 VYE{M(Oxidation (M))|F} 4 5 51.859 0 0 5.1891 0 0 443.16782319591306 0 443.16782319591306 0 33.31104088136313 0 0 0 1.7134679910804405 0 0.8807196863200843 0 + VYE{M(Oxidation (M))|F} 5.1891 + + 303 + NaN NaN 143536.6 NaN 3433 2114 5548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5550 34.612 NaN 208400 35 0 53298 0.261 + 19642 NVEVLHHT 8 46 474.748391324021 947.482229714842 2 474.748291015625 MULTI HCD FTMS 0 0 0 5548 71434.1484375 0.3959704993333924 -5 0.09935760498046875 2 Unmodified _NVEVLHHT_ ENSG00000140332|ENST00000451782|TLE3;ENST00000557815.1_1_15:70343714-70344902:-|nuORF;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726|TLE3 15.847184025352803 0.47719562709667024 2 {[CP]|[EA]}AAVG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R 9 8 + 41.717 0 0 4.4029 4.4029 89.507 0 0 0 24.2943808386579 8.071968632008435 8.071968632008435 26.025684359364405 0 0.7614393726401688 0 0 0 {[CP]|[EA]}AAVG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R;{[CP]|[EA]}[Q{I|L}]G{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R 4.4029;1.6561 -;- 96 + NaN NaN 106523.8 NaN 3434 2114 5548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5551 34.615 NaN 41846 35 0 13858 0.261 -1 SYMTMRRC 8 15 568.7357210812394 1135.4568892292787 2 568.736083984375 MULTI HCD FTMS 0 0 0 5548 16685.873046875 0.9178643991715638 1 -0.01324462890625 3 Carbamidomethyl (C),2 Oxidation (M) _SYM(Oxidation (M))TM(Oxidation (M))RRC(Carbamidomethyl (C))_ ENST00000340941.10_1_5:70895511-70898337:+|nuORF 4.75600775471527 0.5349361699807423 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 92737.3 NaN 3435 2114 5548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5553 34.621 NaN 86258 35 0 25923 0.327 + -1 WWPCMWCPE 9 23 627.2329486986955 1252.451344464191 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5552 61488.5625 0.5591068141670433 10 -0.2291412353515625 1 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 ES 2 -1 10.969 0 0 0.87581 0 0 591.1688870440722 442.18625818424067 1033.355145228313 0 0 0 0 0 0 0 0 0 ES 0.87581 - 4 + NaN NaN 112747.8 NaN 3436 2115 5552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5554 34.625 NaN 123910 35 0 22918 0.262 + 3903 EPQKEINSL 9 39 529.279772741876 1056.5449925505518 2 529.2796020507812 MULTI HCD FTMS 0 0 0 5552 57530.11328125 0.18012382167487154 9 -0.1992645263671875 2 Unmodified _EPQKEINSL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229|ITGA6 16.149105407346934 0.22083165093524068 2 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 8 4 32.625 0 0 3.0879 0 0 149.10423331372016 0 149.10423331372016 0 24.552593986562812 0 0 0 0 0 0.3494850021680094 0.8494850021680094 S[{M(Oxidation (M))|F}V]E{I|L}N{[TV]|[{I|L}S]} 3.0879 - 104 + NaN NaN 109002.8 NaN 3437 2115 5552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5555 34.628 NaN 125940 35 0 17430 0.261 + 9338 HPSAHDVIL 9 42 494.76416344665756 987.5137739601151 2 494.76416015625 MULTI HCD FTMS 0 0 0 5552 55337.25 0.2938984347945585 22 -0.5185585021972656 3 Unmodified _HPSAHDVIL_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 21.74664581756881 0.17247014374749275 2 {I|L}{I|L} 2 7 25.969 0 0 2.6297 0 0 743.334563491653 0 743.334563491653 0 8.718553028398688 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6297 + + 18 NaN NaN 101445 NaN 3438 2115 5552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5556 34.632 NaN 86809 35 0 15260 0.261 + 4100 ESSSESFISR 10 43 564.7619075437884 1127.5092621543768 2 564.76171875 MULTI HCD FTMS 0 0 0 5552 14469.3427734375 0.5725365956690092 1 -0.016574859619140625 4 Unmodified _ESSSESFISR_ ENSG00000185722|ENST00000341657|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;ENST00000575955.1_1_17:4120189-4167236:-|nuORF;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|2|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion 4.189502756095605 0.45312800054222196 2 MV 2 10 20.969 0 0 1.8598 0 0 0 894.3609563028923 894.3609563028923 3.521825181113627 0 0 0 0 0 0 0 0 MV 1.8598 - 14 + NaN NaN 108500.7 NaN 3439 2115 5552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5558 34.637 NaN 176980 35 0 16258 0.327 + 29999 VFLNAPRQYI 10 59 407.56438873600314 1219.6713368082094 3 407.5642395019531 MULTI HCD FTMS 0 0 0 5557 72669.3203125 0.3508473627549042 9 -0.21256637573242188 1 Unmodified _VFLNAPRQYI_ REV__tr|U7SP89|U7SP89_FUSNUFe(3+)ionsimportATP-bindingproteinFbpCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01770PE=4SV=1 10.823927491677226 0.4098686510432541 2 W[Y{I|L}] 3 -1 12.447 0 0 1.0205 0 0 739.4298034603563 0 739.4298034603563 0 7.843181179205063 0 0 0 0.5 0 0 0 W[Y{I|L}] 1.0205 - 7 + NaN NaN 116508.2 NaN 3440 2116 5557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5559 34.642 NaN 66763 35 0 9912.5 0.261 -1 RYMEVSGNL 9 24 542.7581188462589 1083.5016847593176 2 542.758056640625 MULTI HCD FTMS 0 0 0 5557 46694.4140625 0.2565848530028561 8 -0.18268966674804688 2 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 8.155526934196011 0.2891920862272901 2 S[NG]{I|L} 4 -1 16.427 0 0 1.5161 0 0 694.3105183737237 0 694.3105183737237 0 16.42667503568731 0 0 0 0.5 0 0 0 S[NG]{I|L} 1.5161 + + 4 NaN NaN 112269.5 NaN 3441 2116 5557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5560 34.645 NaN 74876 35 0 10598 0.261 + 4101 ESSSESFISR 10 38 564.7619075437884 1127.5092621543768 2 564.7799072265625 MULTI HCD FTMS 0 0 0 5557 21384.953125 0.8461799856732606 2 -0.029926300048828125 3 Unmodified _ESSSESFISR_ ENSG00000185722|ENST00000341657|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;ENST00000575955.1_1_17:4120189-4167236:-|nuORF;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|2|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion 4.189502756095605 0.45312800054222196 2 S{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 5 5 15.229 0 0 1.3507 0 0 519.1802959451956 0 519.1802959451956 0 8.239087409443187 0 0 0 0 0 0 0 + S{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 1.3507 + + 14 + NaN NaN 93958.8 NaN 3442 2116 5557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5562 34.65 NaN 947730 35 0 101850 0.327 + 1547 AYVHMVTHF 9 94 560.7656657896405 1119.5167786460809 2 560.765869140625 MULTI HCD FTMS 0 0 0 5561 399746.03125 0.3083015548848736 -5 0.0728912353515625 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 101.31 0 0 9.0498 9.0498 90.201 0 0 0 3.2118640533678757 3.2118640533678757 3.2118640533678757 3.2118640533678757 0 2.8979400086720375 2 0.5501648626366046 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};AYV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]AAPH{M(Oxidation (M))|F};{[HG]|PP}[Y{I|L}]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9.0498;8.7629;7.8672;5.7032;5.3698;5.0434;4.8127;4.8037;4.5206;4.3865 +;+;-;-;-;-;-;-;-;- + 2870 + NaN NaN 227202.9 NaN 3443 2117 5561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5563 34.655 NaN 110970 35 0 19039 0.261 + 9699 HVTQEDFEM 9 38 576.2374500618795 1150.4603471905589 2 576.2374267578125 MULTI HCD FTMS 0 0 0 5561 67627.5859375 0.5893755635824494 18 -0.428314208984375 2 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 53.40400417844725 0.026808823219830042 2 [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 0 + 70.812 0 0 6.1551 6.1551 88.789 0 0 0 4.137342758552691 70.81215024481537 4.137342758552691 9.208187539523749 0 2.274227503252014 0 0.4247425010840047 0 + + [HV]TQED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[HV]T[AG]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[DP][RP]ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.1551;5.3547;4.94 +;-;- + 89 NaN NaN 98226.8 NaN 3444 2117 5561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5564 34.658 NaN 53673 35 0 10317 0.261 + 11497 IYQRHVYNL 9 22 603.3249331791711 1204.6353134251422 2 603.324951171875 MULTI HCD FTMS 0 0 0 5561 42354.46875 0.5394907282326548 6 -0.146209716796875 3 Unmodified _IYQRHVYNL_ ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 18.1463463914782 0.20357593197100715 2 {I|L}Y 2 7 19.464 0 0 1.6158 0 0 0 925.4662569635374 925.4662569635374 1.2763625255165287 0 0 0 0 0 0 0 0 + {I|L}Y 1.6158 + + 11 + NaN NaN 111763.5 NaN 3445 2117 5561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5565 34.662 NaN 31803 35 0 9214.1 0.264 -1 LFECKEWTMP 10 22 452.8699333952826 NaN 0 452.87030029296875 PEAK HCD FTMS 0 0 0 5561 17403.775390625 0.7830941679838733 168 -4.353031158447266 4 Carbamidomethyl (C),Oxidation (M) _LFEC(Carbamidomethyl (C))KEWTM(Oxidation (M))P_ ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 79860.2 NaN 3446 2117 5561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5567 34.667 NaN 463250 35 0 138550 0.327 + 31943 VYPARTQTL 9 49 524.7930109315968 1047.5714689299934 2 524.7928466796875 MULTI HCD FTMS 0 0 0 5566 141240.5 0.22682994569466375 8 -0.19597625732421875 1 Unmodified _VYPARTQTL_ ENSG00000198502|ENST00000374975|HLA-DRB5 26.268140514670165 0.13340543277302316 2 [YV]MV 4 7 38.188 0 0 3.6453 0 0 0 552.3081382017309 552.3081382017309 15.356668758921828 0 0 0 0 0.5 2 0 0 [YV]MV 3.6453 - 44 NaN NaN 163048.9 NaN 3447 2118 5566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5568 34.671 NaN 260920 35 0 30439 0.262 -1 KYMKEKLLF 9 55 405.8984129303133 1214.67340939114 3 405.8982849121094 MULTI HCD FTMS 0 0 0 5566 85310.875 0.7192889232467872 -2 0.029926300048828125 2 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 10.150570793230772 0.27265765907388223 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5943821468024 0 1049.5943821468024 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 10 + NaN NaN 123504.5 NaN 3448 2118 5566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5569 34.675 NaN 289950 35 0 32291 0.261 -1 FPDPEKPCKMC 11 56 437.5237689412435 1309.5494774239305 3 437.5240173339844 MULTI HCD FTMS 0 0 0 5566 125469.203125 1 0 0 3 Oxidation (M) _FPDPEKPCKM(Oxidation (M))C_ ENSG00000198356|ENST00000357332|GET3 14.170726826480097 0.3336124043171337 2 M{I|L}D 3 -1 46.198 0 0 3.5278 0 0 0 947.3780947077789 947.3780947077789 25.90743145471194 0 0 0 0 1 1.3010299956639813 0 0 M{I|L}D 3.5278 - 33 + NaN NaN 132026.1 NaN 3449 2118 5566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5570 34.678 NaN 306940 35 0 20303 0.261 + 18971 NAMEDAQTL 9 66 504.71880388049783 1007.4230548277957 2 504.7189025878906 MULTI HCD FTMS 0 0 0 5566 102801.25 0.7675940910253881 -4 0.05974578857421875 4 Oxidation (M) _NAM(Oxidation (M))EDAQTL_ ENSG00000196975|ENST00000394295|ANXA4;nc|ENSG00000196975|P09525|ANXA4 42.312485326615175 0.05472917415473307 2 {[QG]|[NA]}{M(Oxidation (M))|F}EDAQT{I|L} 9 0 + 58.146 0 0 5.7718 5.7718 85.706 0 0 0 5.172655519383085 14.973024840566467 5.172655519383085 5.172655519383085 0 1.1861818737241734 1.3979400086720375 0 0.2742275032520141 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDAQT{I|L};[TA]C(Carbamidomethyl (C))EDAQT{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDA[AG]T{I|L};[TA]C(Carbamidomethyl (C))EDA[AG]T{I|L};[TA][CG]EDAQT{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDAV{[QD]|[EN]|[WG]|[KD]|[RS]};[TA][CG]EDA[AG]T{I|L};[TA]C(Carbamidomethyl (C))EDAV{[QD]|[EN]|[WG]|[KD]|[RS]};[TA][CG]EDAV{[QD]|[EN]|[WG]|[KD]|[RS]};{[QG]|[NA]}{M(Oxidation (M))|F}E[{I|L}T]E{[QG]|[NA]} 5.7718;5.2583;4.8577;4.3443;4.3443;4.0865;3.4346;3.2262;2.3121;1.6162 +;-;-;-;-;-;-;-;-;- + 171 NaN NaN 133131.2 NaN 3450 2118 5566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5571 34.682 NaN 37199 35 0 4947.3 0.261 -1 MWCHHAEMQN 10 29 459.17209456794615 NaN 0 459.1726379394531 PEAK HCD FTMS 0 0 0 5566 12894.794921875 0.7123767150588093 -10 0.18890380859375 5 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))WC(Carbamidomethyl (C))HHAEM(Oxidation (M))QN_ sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1 0.15932191953741626 0.34004793154798674 2 A 1 -1 1.9897 0 0 0.21714 0 0 458.5387254134329 383.73606287174067 842.2747882851736 0 0 0 0 0 0 0 0 0 A 0.21714 + + 1 + NaN NaN 86089.8 NaN 3451 2118 5566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5572 34.685 NaN 65613 35 0 11117 0.261 + 7985 GESVIGKTY 9 30 477.2506827594135 952.486812585627 2 477.2510070800781 MULTI HCD FTMS 0 0 0 5566 13596.4384765625 0.704053962347236 3 -0.06974411010742188 6 Unmodified _GESVIGKTY_ ENSG00000107863|ENST00000396432|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23;ENST00000401578.2_1_6:80777785-80779717:-|nuORF;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;nc|ENSG00000275832|Q9P227-2|ARHGAP23 2.9952420565917617 0.3283108881486655 2 D 1 9 5.4846 0 0 0.57581 0 0 428.3264246282337 406.1097811334594 834.4362057616931 0 0 0 0 0 0 0 0 0 D 0.57581 - 2 + NaN NaN 97525.1 NaN 3452 2118 5566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5574 34.69 NaN 237710 35 0 22601 0.327 -1 PVTLVPVQM 9 56 500.2816612488314 998.5487695644629 2 500.7823791503906 MULTI HCD FTMS 0 0 0 5573 45621.07421875 0.7376809471375169 -3 0.05316162109375 1 Oxidation (M) _PVTLVPVQM(Oxidation (M))_ ENSG00000177888|ENST00000367405|ZBTB41;ENST00000467322.1_1_1:197128491-197145097:-|nuORF 7.910154910731844 0.2910521888787154 2 YE{M(Oxidation (M))|F} 3 -1 30.49 0 0 3.0534 0 0 541.397338276817 0 541.397338276817 0 16.01846239614641 0 0 0 0 0 0.7302046884880937 0 YE{M(Oxidation (M))|F} 3.0534 - 229 + NaN NaN 128903.1 NaN 3453 2119 5573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5575 34.695 NaN 111260 35 0 11634 0.262 + -1 RRIVVYFKM 9 41 409.90584316911765 1226.695700107553 3 409.9056701660156 MULTI HCD FTMS 0 0 0 5573 23852.064453125 0.11557296676111173 32 -0.7872428894042969 2 Oxidation (M) _RRIVVYFKM(Oxidation (M))_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 1.0714618166137932 0.3428945748894048 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.6699 0 0 1061.6499370233716 0 1061.6499370233716 0 9.247425010840047 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6699 + + 13 + NaN NaN 110801.9 NaN 3454 2119 5573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5576 34.698 NaN 60874 35 0 15535 0.261 -1 NADPQAVTM 9 20 481.71613286382154 961.4177127944431 2 481.7157897949219 MULTI HCD FTMS 0 0 0 5573 20587.955078125 0.01778686414851131 114 -2.8949432373046875 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 11.494710602746466 0.2610445893512368 2 AV[{M(Oxidation (M))|F}T] 4 -1 30.445 0 0 3.1667 0 0 525.2189808576187 0 525.2189808576187 0 30.445312593723983 0 0 0 1.4247425010840047 0 0 0 AV[{M(Oxidation (M))|F}T] 3.1667 + + 19 NaN NaN 105989.1 NaN 3455 2119 5573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5577 34.702 NaN 27934 35 0 4277 0.261 + 22074 QHIKKKKKVKG 11 25 441.29757465645827 NaN 0 441.297607421875 PEAK HCD FTMS 0 0 0 5573 21348.07421875 0.548173529584642 324 -8.328449249267578 4 Unmodified _QHIKKKKKVKG_ REV__ENSG00000103550|ENST00000219837|KNOP1;REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107469.1 NaN 3456 2119 5573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5578 34.705 NaN 20093 35 0 4187.7 0.261 + 31087 VTESANQLTQR 11 17 623.8231175259798 1245.6316821187595 2 623.8231811523438 MULTI HCD FTMS 0 0 0 5573 16374.7958984375 0.01125900901157389 27 -0.6547164916992188 5 Unmodified _VTESANQLTQR_ REV__ENSG00000054219|ENST00000263636|LY75;REV__LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;REV__nc|ENSG00000054219|O60449-2|LY75;REV__nc|ENSG00000054219|O60449-3|LY75 2.0860074813731053 0.4097721463192591 2 AQ{I|L} 3 -1 16.198 0 0 1.3004 0 0 530.2369200111408 400.1951998346313 930.4321198457721 0 0 0 0 0 0 0 0 0 AQ{I|L} 1.3004 - 9 + NaN NaN 101128.9 NaN 3457 2119 5573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5579 34.708 NaN 38807 35 0 5732.2 0.261 + -1 RMHVIWMT 8 29 553.2674050826294 NaN 0 553.2672729492188 PEAK HCD FTMS 0 0 0 5573 11301.546875 0.8043427115758635 -22 0.4687767028808594 6 2 Oxidation (M) _RM(Oxidation (M))HVIWM(Oxidation (M))T_ REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97550.4 NaN 3458 2119 5573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5581 34.714 NaN 451500 35 0 156640 0.327 + 15662 LPEKEGEEL 9 53 522.2665321372752 1042.5185113413504 2 522.266357421875 MULTI HCD FTMS 0 0 0 5580 228554.5625 1 0 0 1 Unmodified _LPEKEGEEL_ ENSG00000177469|ENST00000357037|CAVIN1 63.227496030279354 0.01306643085373406 2 [{I|L}P]EKEGEE{I|L} 9 0 + 72.391 0 0 6.9439 6.9439 92.163 0 0 0 1.5314403606230087 38.98203399713715 1.5314403606230087 14.208187539523749 0 1.5 2 1.1861818737241734 0 + + [{I|L}P]EKEGEE{I|L};[{I|L}P][SG]{I|L}EGEE{I|L};{[QN]|[E{I|L}]|[KN]}PKEGEE{I|L};[EP]{I|L}KEGEE{I|L};[EP]K{I|L}EGEE{I|L};[VP]{[SA]|[TG]}{I|L}EGEE{I|L} 6.9439;5.581;5.0035;4.426;3.9464;2.7253 +;-;-;-;-;- + 427 NaN NaN 169318.6 NaN 3459 2120 5580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5582 34.718 NaN 623540 35 0 117520 0.261 + 27511 TAADDSSVKL 10 61 503.75626520159346 1005.497977469987 2 503.75628662109375 MULTI HCD FTMS 0 0 0 5580 305788.40625 0.3078852394303127 -4 0.0764007568359375 2 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 83.27773906761396 0.001852393573912202 2 TAADDSSVK{I|L} 10 0 + 92.08 0 0 9.1576 9.1576 92.378 0 0 0 8.41612688240572 8.41612688240572 8.41612688240572 8.41612688240572 0 2.9802046884880937 1.6989700043360187 0.3807196863200844 0.28872548999643577 + + TAADDSSVK{I|L};[TA]ADDSSVK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDSSVK{I|L};[TA]ADD[KT][TA]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DD[KT][TA]{I|L} 9.1576;8.3206;5.484;4.8646;2.028 +;+;-;-;- + 161 + NaN NaN 183895.1 NaN 3460 2120 5580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5583 34.721 NaN 147730 35 0 48676 0.261 -1 VTAQMWVE 8 31 490.23143212965704 NaN 0 490.2450256347656 PEAK HCD FTMS 0 0 0 5580 5817.25927734375 0.4019197490164666 6 -0.14950180053710938 3 Oxidation (M) _VTAQM(Oxidation (M))WVE_ ENST00000366610.7_1_1:234741632-234741836:-|nuORF 2.302733041254933 0.38822285293237185 2 E 1 -1 1.2591 0 0 0.12868 0 0 531.2309784177141 315.15683923892817 846.3878176566423 0 0 0 0 0 0 0 0 0 E 0.12868 + + 1 + NaN NaN 109146 NaN 3461 2120 5580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5584 34.725 NaN 53022 35 0 6995.7 0.261 + 6002 FPDRIDECP 9 26 546.2449526635525 1090.4753523939048 2 546.2448120117188 MULTI HCD FTMS 0 0 0 5580 17707.90234375 0.3154829874442138 37 -0.932586669921875 4 Unmodified _FPDRIDECP_ nc|ENSG00000061938|Q07912-2|TNK2 8.745405648335112 0.2847203663274469 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DREEV{[CP]|[EA]} 9 3 + 25.123 0 0 2.3039 2.3039 87.762 0 0 0 18.13363730737706 5.642492736872601 5.642492736872601 25.12333735073725 0 0.5 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DREEV{[CP]|[EA]} 2.3039 - 33 + NaN NaN 102287.8 NaN 3462 2120 5580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5585 34.728 NaN 35056 35 0 7562.9 0.261 -1 LGMESRGIHET 11 21 636.3062131587427 1270.5978733842853 2 636.3076782226562 MULTI HCD FTMS 0 0 0 5580 15407.453125 0.8839379678185648 -1 0.0232391357421875 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGMESRGIHET_ ENST00000418351.1_1_15:44281261-44281585:-|nuORF 2.9952420565917617 0.40578455234410343 2 VM 2 -1 20.969 0 0 1.6503 0 0 1022.4787846565547 0 1022.4787846565547 0 20.969100130080562 0 0 0 0 0 0 0 VM 1.6503 - 2 NaN NaN 93338.7 NaN 3463 2120 5580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5586 34.731 NaN 33609 35 0 9224.5 0.264 + 30549 VNEVLLIL 8 25 456.7932564511544 NaN 0 456.5527038574219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VNEVLLIL_ REV__PARP14|p.I172V|1|0.16|ENSG00000173193|chr3:122692459-122692459|A/G|missense_variant 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88198.9 NaN 3464 2120 5580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5588 34.737 NaN 225690 35 0 70649 0.327 -1 RYLEKPMEI 9 35 597.8131771484126 1193.611801363625 2 597.8131713867188 MULTI HCD FTMS 0 0 0 5587 106921.59375 0.1162789772969415 14 -0.3418846130371094 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 22.65808497894818 0.16459551161911185 2 {I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}KE 6 -1 37.184 0 0 3.1153 0 0 0 429.2244967096313 429.2244967096313 24.62144052772942 0 0 0 0 1 0 0.4247425010840047 0.3807196863200844 {I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}KE 3.1153 - 76 + NaN NaN 129510.8 NaN 3465 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5589 34.741 NaN 148440 35 0 16363 0.262 + 7130 FSAPENAVR 9 55 495.7535537257636 989.4925545183272 2 495.7535705566406 MULTI HCD FTMS 0 0 0 5587 30291.69921875 0.7862917494817152 1 -0.0265960693359375 2 Unmodified _FSAPENAVR_ ENSG00000111678|ENST00000229281|C12orf57 22.736283301280096 0.1639198954644489 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A 3 6 39.922 0 0 4.0345 0 0 0 681.3333802842053 681.3333802842053 18.95242492728684 0 0 0 0 1 1.3979400086720375 1 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A 4.0345 + + 51 NaN NaN 108745.8 NaN 3466 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5590 34.745 NaN 94123 35 0 10768 0.261 + 7165 FSHHSNLIV 9 42 527.2773658163322 1052.5401786994644 2 527.2774658203125 MULTI HCD FTMS 0 0 0 5587 9347.2470703125 0.06506708783837727 12 -0.30207061767578125 3 Unmodified _FSHHSNLIV_ ENSG00000213762|ENST00000396161|ZNF134;nc|ENSG00000213762|P52741-2|ZNF134 9.38312468134398 0.279288223203164 2 H{[ES]|[DT]|[{I|L}C]} 3 7 10.7 0 0 1.0166 0 0 681.3808597949973 0 681.3808597949973 0 1.7474250108400469 0 0 0 0.3252574989159953 0 0 0 H{[ES]|[DT]|[{I|L}C]} 1.0166 - 11 NaN NaN 94565.3 NaN 3467 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5591 34.748 NaN 44182 35 0 3721.6 0.261 + 23902 RSTGKGIVEF 10 33 547.3037561493493 1092.5929593654985 2 547.3035888671875 MULTI HCD FTMS 0 0 0 5587 25812.486328125 1 0 0 4 Unmodified _RSTGKGIVEF_ ENSG00000116560|ENST00000357214|SFPQ;nc|ENSG00000116560|P23246-2|SFPQ 2.498486711656943 0.462078817294651 2 TV 2 8 10.969 0 0 1.004 0 0 193.0761938590054 696.3836763971311 889.4598702561366 0 0 0 0 0 0 0 0 0 TV 1.004 - 7 + NaN NaN 88858 NaN 3468 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5592 34.751 NaN 67995 35 0 9939.4 0.261 + 34823 YRIEKDKL 8 26 532.8084788813801 1063.60240482956 2 532.80859375 MULTI HCD FTMS 0 0 0 5587 18266.80078125 0.15551392747757548 -5 0.09967041015625 5 Unmodified _YRIEKDKL_ REV__ENST00000571212.1_1_16:68037572-68037671:-|nuORF 3.944395688203298 0.5361403129012058 2 KE 2 -1 10.969 0 0 1.0313 0 0 374.2168665488535 429.2248934381469 803.4417599870004 0 0 0 0 0 0 0 0 0 KE 1.0313 - 9 + NaN NaN 89248.5 NaN 3469 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5593 34.755 NaN 19966 35 0 3133.8 0.261 + -1 KQCIPCSNQ 9 17 567.7552341079969 NaN 0 567.7545776367188 PEAK HCD FTMS 0 0 0 5587 11771.400390625 0.6605559055456404 -1 0.0232696533203125 6 2 Carbamidomethyl (C) _KQC(Carbamidomethyl (C))IPC(Carbamidomethyl (C))SNQ_ REV__ENSG00000165821|ENST00000537235|SALL2;REV__nc|ENSG00000165821|Q9Y467|SALL2 1.844237919475145 0.28630992268396543 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.40619 0 0 347.14839438611244 623.2857149713499 970.4341093574624 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.40619 + + 2 + NaN NaN 89170.1 NaN 3470 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5594 34.758 NaN 34986 35 0 4953.9 0.261 + 20835 PHVDEFLQR 9 25 570.7937226811578 1139.5728924291154 2 570.7940673828125 MULTI HCD FTMS 0 0 0 5587 10911.5771484375 0.3394105899568204 13 -0.31531524658203125 7 Unmodified _PHVDEFLQR_ ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000144677|ENST00000273179|CTDSPL;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL 1.844237919475145 0.33703635659052655 2 W 1 9 3.9794 0 0 0.3492 0 0 638.3166801261842 312.14618860416255 950.4628687303468 0 0 0 0 0 0 0 0 0 W 0.3492 - 3 + NaN NaN 97602.1 NaN 3471 2121 5587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5596 34.763 NaN 642590 35 0 82995 0.327 + 35161 YVHMVTHF 8 57 525.247291806129 1048.480030679058 2 525.2471923828125 MULTI HCD FTMS 0 0 0 5595 140097.21875 0.9918761316107167 -1 0.0265960693359375 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 98.80718514221951 0.03801807386884047 2 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 90.387 0 0 8.6207 8.6207 96.587 0 0 0 5.044321917401078 5.044321917401078 5.044321917401078 30.044321917401078 0 2.6989700043360187 2 0.7302046884880937 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[YV]VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[TV]|[{I|L}S]}[YV]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[TV]|[{I|L}S]}H[YV]{M(Oxidation (M))|F} 8.6207;5.7552;5.3246;3.6352;1.252;0.5853 +;-;-;-;-;- + 351 NaN NaN 175619.8 NaN 3472 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5597 34.768 NaN 252590 35 0 65503 0.261 + 19176 NIDVNRFA 8 51 474.748391324021 947.482229714842 2 474.7484436035156 MULTI HCD FTMS 0 0 0 5595 124483.84375 0.6900331402670051 3 -0.08629989624023438 2 Unmodified _NIDVNRFA_ REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF 20.453626601364224 0.4433031943603284 2 {[CP]|[EA]}AAVGG{M(Oxidation (M))|F}AR 10 -1 + 58.211 0 0 6.1438 6.1438 85.75 0 0 0 39.539106406846045 15.026975159433533 15.026975159433533 3.7641002136337676 0 1.086696871556164 0 0 0 {[CP]|[EA]}AAVGG{M(Oxidation (M))|F}AR;{[CP]|[EA]}AAVN{M(Oxidation (M))|F}AR;{[CP]|[EA]}AAVG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R;{[CP]|[EA]}[Q{I|L}]GG{M(Oxidation (M))|F}AR;{[CP]|[EA]}[Q{I|L}]N{M(Oxidation (M))|F}AR;{[CP]|[EA]}[Q{I|L}]G{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R 6.1438;5.7465;4.6144;3.3913;2.9997;1.8675 -;-;-;-;-;- 165 + NaN NaN 119671.9 NaN 3473 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5598 34.771 NaN 149090 35 0 17097 0.261 + 29717 VDGVYMIKG 9 38 491.258936303439 NaN 0 491.2482604980469 PEAK HCD FTMS 0 0 0 5595 2713.822265625 0.5918451167443933 1 -0.033184051513671875 3 Unmodified _VDGVYMIKG_ REV__DNMT3A|p.S689C|1|0.19|ENSG00000119772|chr2:25241579-25241579|T/A|missense_variant;REV__ENSG00000119772|ENST00000321117|DNMT3A;REV__ENST00000474887.5_1_2:25458684-25467188:-|nuORF;REV__ENST00000491288.5_1_2:25462067-25466797:-|nuORF;REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 6.9897 0 0 0.71287 0 0 664.2928532203562 200.10396753482658 864.3968207551827 0 0 0 0 0 0 0 0 0 {I|L} 0.71287 + + 8 + NaN NaN 110397.1 NaN 3474 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5599 34.775 NaN 118590 35 0 18542 0.261 + 20296 NYNNQSSNF 9 36 544.2257591248546 1086.436965316509 2 544.2255859375 MULTI HCD FTMS 0 0 0 5595 74319.9375 0.9503139058608081 -1 0.0265960693359375 4 Unmodified _NYNNQSSNF_ chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1 63.960520009940105 0.0120409805053046 2 QSSN{M(Oxidation (M))|F} 5 4 67.251 0 0 6.19 0 0 505.1910572736344 0 505.1910572736344 0 48.974315640635595 0 0 0 1.9247425010840047 0 0 1.6549471895720984 + QSSN{M(Oxidation (M))|F} 6.19 + + 93 NaN NaN 100935.9 NaN 3475 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5600 34.778 NaN 187570 35 0 17384 0.261 + -1 VPKIPKEM 8 56 500.2816612488314 998.5487695644629 2 500.78302001953125 MULTI HCD FTMS 0 0 0 5595 61843.91015625 1 0 0 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VPKIPKEM(Oxidation (M))_ REV__ENSG00000145626|ENST00000274278|UGT3A1;REV__ENSG00000168671|ENST00000282507|UGT3A2;REV__nc|ENSG00000145626|Q6NUS8-2|UGT3A1;REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2;REV__UGT3A1|p.G269R|1|0.19|ENSG00000145626|chr5:35965424-35965424|C/T|missense_variant 5.760428011301431 0.5334459684533844 2 YE{M(Oxidation (M))|F} 3 -1 23.984 0 0 2.4019 0 0 541.3964601898402 0 541.3964601898402 0 14.98818998398079 0 0 0 0 0 0.3807196863200844 0 YE{M(Oxidation (M))|F} 2.4019 - 60 + NaN NaN 116694.4 NaN 3476 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5601 34.781 NaN 53141 35 0 15438 0.261 + -1 WWPCMWCPE 9 18 627.2329486986955 1252.451344464191 2 627.2333984375 MULTI HCD FTMS 0 0 0 5595 36809.55859375 0.3347041173103807 17 -0.42884063720703125 6 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 S 1 -1 6.9897 0 0 0.55808 0 0 720.2078974436837 442.1882418268188 1162.3961392705025 0 0 0 0 0 0 0 0 0 S 0.55808 - 1 + NaN NaN 98554.9 NaN 3477 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5602 34.785 NaN 156890 35 0 11504 0.262 + 1452 AYSLRVELQ 9 53 539.7985094580721 1077.582465982944 2 539.8104858398438 MULTI HCD FTMS 0 0 0 5595 7093.30517578125 0.8135240388804652 -1 0.0265960693359375 7 Unmodified _AYSLRVELQ_ ENSG00000101280|ENST00000381922|ANGPT4;nc|ENSG00000101280|Q9Y264-2|ANGPT4 9.38312468134398 0.279288223203164 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEK 5 5 43.328 0 0 4.0208 0 0 0 484.27634607486567 484.27634607486567 19.3753063169585 0 0 0 0 0 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEK 4.0208 - 107 + NaN NaN 121127.1 NaN 3478 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5603 34.788 NaN 144820 35 0 19951 0.261 -1 MEEEAGQTSI 10 46 555.7343544632182 1109.4541559932363 2 555.735107421875 MULTI HCD FTMS 0 0 0 5595 49201.8125 0.38177158744654494 -20 0.4211883544921875 8 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 24.990960013464015 0.27735500881591096 2 {M(Oxidation (M))|F}QTS{I|L} 5 -1 50.305 0 0 4.5342 0 0 515.1967030255875 0 515.1967030255875 0 44.820618910682484 0 0 0 0.9247425010840047 0 0.8494850021680094 0 {M(Oxidation (M))|F}QTS{I|L} 4.5342 - 68 NaN NaN 107964.5 NaN 3479 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5604 34.791 NaN 140910 35 0 14058 0.261 + 9110 HPFPDHEL 8 46 496.2352689577343 990.4559849822687 2 496.23492431640625 MULTI HCD FTMS 0 0 0 5595 35339.78125 1 0 0 9 Unmodified _HPFPDHEL_ ENSG00000159842|ENST00000302538|ABR;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-2|ABR;nc|ENSG00000159842|Q12979-4|ABR;VPS53-ABR|1|fusion 23.1484247019978 0.4234759064137959 2 HP{M(Oxidation (M))|F} 3 5 23.188 0 0 2.3411 0 0 0 606.2544039361936 606.2544039361936 2.614393726401687 0 0 0 0 0 0 0 0 + HP{M(Oxidation (M))|F} 2.3411 + + 32 + NaN NaN 99723.7 NaN 3480 2122 5595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5606 34.797 NaN 2294300 35 0 235720 0.327 + 1548 AYVHMVTHF 9 113 560.7656657896405 1119.5167786460809 2 560.7660522460938 MULTI HCD FTMS 0 0 0 5605 1274423.375 0.9828908291234681 1 -0.0232391357421875 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 161.8943921545576 8.236690082142223E-09 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 119.48 0 0 10.673 10.673 95.885 0 0 0 81.86402107626796 12.587418566968154 12.587418566968154 11.855742973178607 0 3.1237125054200234 2 0.868415180652539 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}TVH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}THV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}V[C(Carbamidomethyl (C))Q]P;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F} 10.673;9.6138;9.333;8.2918;6.9952;6.6384;6.5712;6.5653;6.5304;6.4663 +;+;-;-;-;-;-;-;-;- + 6734 + NaN NaN 434520.2 NaN 3481 2123 5605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5607 34.801 NaN 84522 35 0 15046 0.261 + 9700 HVTQEDFEM 9 39 576.2374500618795 1150.4603471905589 2 576.2371826171875 MULTI HCD FTMS 0 0 0 5605 49232.2734375 0.4290601017532708 24 -0.5749320983886719 2 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 51.41523569358685 0.02959097413485123 2 QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 66.121 0 0 5.7473 0 0 337.1772794188776 0 337.1772794188776 0 61.51654413832347 0 0 0 2.4247425010840047 0 0.8252574989159953 0 + QED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.7473 + + 48 + NaN NaN 102202.1 NaN 3482 2123 5605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5608 34.805 NaN 118410 35 0 15593 0.261 + 9891 IAQPKRGANV 10 47 527.3117890882658 1052.6090252433314 2 527.3117065429688 MULTI HCD FTMS 0 0 0 5605 42510.8671875 0.8957027382649521 -1 0.033184051513671875 3 Unmodified _IAQPKRGANV_ REV__ENSG00000196526|ENST00000420658|AFAP1;REV__ENST00000505447.5_1_4:7765494-7780765:-|nuORF;REV__ENST00000513842.1_1_4:7765494-7800689:-|nuORF;REV__nc|ENSG00000196526|Q8N556|AFAP1 6.723162845929126 0.4397169348982109 2 H 1 -1 6.9897 0 0 0.66404 0 0 234.16943238963125 678.3552957906908 912.524728180322 0 0 0 0 0 0 0 0 0 H 0.66404 - 11 + NaN NaN 106210.6 NaN 3483 2123 5605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5609 34.808 NaN 154670 35 0 19704 0.261 + 30684 VPENHSVAL 9 41 483.2561437809302 964.4977346286604 2 483.2559814453125 MULTI HCD FTMS 0 0 0 5605 67281.46875 0.036122123317608765 -11 0.2191009521484375 4 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 23.789781309258295 0.1548179064208189 2 SVA{I|L} 4 5 35.675 0 0 3.6989 0 0 576.263963767775 0 576.263963767775 0 15.753800256993951 0 0 0 0.5 0 0.3252574989159953 0 + SVA{I|L} 3.6989 + + 28 NaN NaN 117595.8 NaN 3484 2123 5605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5610 34.811 NaN 46728 35 0 6515.7 0.261 + 34707 YPVEHPDKF 9 23 566.2765063076831 1130.5384596821661 2 566.2763671875 MULTI HCD FTMS 0 0 0 5605 31230.744140625 1 0 0 5 Unmodified _YPVEHPDKF_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 14.405379775768559 0.2358970535022398 2 K{M(Oxidation (M))|F} 2 7 25.969 0 0 2.2971 0 0 837.3611679943318 0 837.3611679943318 0 5 0 0 0 0.5 0 0 0 + K{M(Oxidation (M))|F} 2.2971 + + 4 NaN NaN 90899.3 NaN 3485 2123 5605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5611 34.814 NaN 28833 35 0 8355.7 0.261 + -1 RDDDEDMYV 9 15 587.2214079932105 1172.428263053221 2 587.2215576171875 MULTI HCD FTMS 0 0 0 5605 15493.599609375 0.8969626132295129 1 -0.0232391357421875 6 Oxidation (M) _RDDDEDM(Oxidation (M))YV_ REV__ENSG00000036549|ENST00000370801|ZZZ3;REV__nc|ENSG00000036549|Q8IYH5-2|ZZZ3;REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93925 NaN 3486 2123 5605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5613 34.82 NaN 217400 35 0 18987 0.327 -1 KYMKEKLLF 9 53 405.8984129303133 1214.67340939114 3 405.8983154296875 MULTI HCD FTMS 0 0 0 5612 102271.1328125 0.8622874047409815 4 -0.09960556030273438 1 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 12.872603262515298 0.2491399024913319 2 K{M(Oxidation (M))|F} 2 -1 26.454 0 0 2.1778 0 0 921.4916859357437 0 921.4916859357437 0 10.969100130080562 0 0 0 0.5 0 0 0.5 K{M(Oxidation (M))|F} 2.1778 - 19 NaN NaN 118024.3 NaN 3487 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5614 34.824 NaN 172450 35 0 16479 0.261 + -1 VPKIPKEM 8 54 500.2816612488314 998.5487695644629 2 500.78369140625 MULTI HCD FTMS 0 0 0 5612 41581.265625 0.6723582891176192 2 -0.043212890625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VPKIPKEM(Oxidation (M))_ REV__ENSG00000145626|ENST00000274278|UGT3A1;REV__ENSG00000168671|ENST00000282507|UGT3A2;REV__nc|ENSG00000145626|Q6NUS8-2|UGT3A1;REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2;REV__UGT3A1|p.G269R|1|0.19|ENSG00000145626|chr5:35965424-35965424|C/T|missense_variant 5.760428011301431 0.5334459684533844 2 YE{M(Oxidation (M))|F} 3 -1 24.679 0 0 2.4715 0 0 541.3970100319135 0 541.3970100319135 0 15.677871029938114 0 0 0 0 0 0.3252574989159953 0 YE{M(Oxidation (M))|F} 2.4715 - 118 + NaN NaN 105364 NaN 3488 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5615 34.828 NaN 97421 35 0 13363 0.261 -1 MLDILMDYCH 10 39 437.5237689412435 1309.5494774239305 3 437.5240478515625 MULTI HCD FTMS 0 0 0 5612 42525.30859375 0.3389302516840226 6 -0.15274810791015625 3 Carbamidomethyl (C) _MLDILMDYC(Carbamidomethyl (C))H_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 5.40270961882225 0.4467063037482923 2 M{I|L}D 3 -1 45.177 0 0 3.4498 0 0 0 947.3776024848901 947.3776024848901 39.49092531119419 0 0 0 0 0.5 1.6989700043360187 0 0 M{I|L}D 3.4498 + + 11 + NaN NaN 108089.2 NaN 3489 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5616 34.831 NaN 55742 35 0 6672.7 0.261 + 21830 QASPASSLLV 10 29 486.77198506570284 971.5294171982057 2 486.7721252441406 MULTI HCD FTMS 0 0 0 5612 30085.09765625 0.9515832374094098 -1 0.0232391357421875 4 Unmodified _QASPASSLLV_ ENST00000262949.7_1_19:3573736-3575577:+|nuORF 3.2813086475875832 0.45793521633868084 2 V 1 9 5.4846 0 0 0.56453 0 0 148.1226324899108 721.3154390924436 869.4380715823545 0 0 0 0 0 0 0 0 0 + V 0.56453 + + 2 + NaN NaN 101082.2 NaN 3490 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5617 34.834 NaN 19104 35 0 5427.6 0.261 + 23276 RHDLLNKFY 9 16 603.3249331791711 1204.6353134251422 2 603.3248291015625 MULTI HCD FTMS 0 0 0 5612 8773.548828125 0.11175321958134372 13 -0.3192939758300781 5 Unmodified _RHDLLNKFY_ ENSG00000187535|ENST00000426508|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF;nc|ENSG00000187535|Q96RY7-2|IFT140 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96264.8 NaN 3491 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5618 34.838 NaN 41590 35 0 5635.7 0.261 + -1 CMPCTCHES 9 29 570.6812265855879 1139.3479002379756 2 570.6806640625 MULTI HCD FTMS 0 0 0 5612 8472.8623046875 0.6973481962301032 1 -0.029876708984375 6 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))PC(Carbamidomethyl (C))TCHES_ REV__ENSG00000113269|ENST00000521389|RNF130;REV__nc|ENSG00000113269|Q86XS8-2|RNF130 0.5247636613948944 0.34703895399870666 2 N 1 -1 1.5938 0 0 0.13989 0 0 492.6331308061381 529.6504610650999 1022.2835918712381 0 0 0 0 0 0 0 0 0 N 0.13989 - 1 + NaN NaN 109201.2 NaN 3492 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5619 34.841 NaN 25094 35 0 3574.7 0.261 -1 CLICCAVLFVM 11 18 636.3062131587427 1270.5978733842853 2 636.3056640625 MULTI HCD FTMS 0 0 0 5612 8604.4384765625 0.4936435502666846 3 -0.0830078125 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))LICCAVLFVM_ ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3 1.4819007175156935 0.4124215533673021 2 VM 2 -1 20.969 0 0 1.6503 0 0 1022.479193099574 0 1022.479193099574 0 20.969100130080562 0 0 0 0 0 0 0 VM 1.6503 + + 1 NaN NaN 83087.8 NaN 3493 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5620 34.844 NaN 19779 35 0 4237.2 0.261 + 23312 RISDFHETY 9 14 584.2749713541089 1166.5353897750176 2 584.2761840820312 MULTI HCD FTMS 0 0 0 5612 7305.42578125 0.7298426704078705 1 -0.029876708984375 8 Unmodified _RISDFHETY_ ENSG00000183337|ENST00000378444|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 5.296884461304476 0.3108627248283497 2 E[YT] 3 6 10.458 0 0 0.89646 0 0 755.3736439435562 0 755.3736439435562 0 10.45757490560675 0 0 0 0 0 0 0 + E[YT] 0.89646 + + 1 NaN NaN 86113 NaN 3494 2124 5612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5622 34.85 NaN 110040 35 0 19018 0.327 + 12989 KYINTDAKF 9 36 550.2935029854779 1098.5724530377556 2 550.2933959960938 MULTI HCD FTMS 0 0 0 5621 80204.5703125 0.47915784928185495 -3 0.08629989624023438 1 Unmodified _KYINTDAKF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 36.506200033944 0.08138327636155518 2 AK{M(Oxidation (M))|F} 3 6 28.188 0 0 2.5658 0 0 734.3596893864452 0 734.3596893864452 0 7.2184874961635614 0 0 0 0.5 0 0 0 + AK{M(Oxidation (M))|F} 2.5658 + + 16 NaN NaN 101441.6 NaN 3495 2125 5621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5623 34.854 NaN 94061 35 0 13352 0.263 -1 RYVRKFVLM 9 33 409.9057362128441 1226.6953792387324 3 409.905517578125 MULTI HCD FTMS 0 0 0 5621 23856.359375 0.11960948949825977 -23 0.5074882507324219 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7926 0 0 1061.64963141334 0 1061.64963141334 0 15 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7926 + + 7 + NaN NaN 88660.5 NaN 3496 2125 5621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5624 34.858 NaN 36196 35 0 9163.4 0.261 + 32777 WRSFQGNQ 8 26 511.7452242778242 1021.4758956224484 2 511.7449951171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WRSFQGNQ_ REV__ENSG00000188089|ENST00000696112|PLA2G4E;REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E 2.0597508629832335 0.5389364538378849 2 {M(Oxidation (M))|F} 1 -1 1.5938 0 0 0.15603 0 0 422.1649347843609 449.2119234674438 871.3768582518047 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.15603 + + 1 + NaN NaN 94986.6 NaN 3497 2125 5621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5626 34.863 NaN 1168900 35 0 276160 0.327 + 27512 TAADDSSVKL 10 72 503.75626520159346 1005.497977469987 2 503.7563781738281 MULTI HCD FTMS 0 0 0 5625 835156.4375 0.8408832201153946 2 -0.056392669677734375 1 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 128.5786326129116 2.249882698014817E-05 2 [TA]ADDSSVK{I|L} 10 0 + 111.94 0 0 11.133 11.133 91.545 0 0 0 3.767711195242768 3.767711195242768 3.767711195242768 3.767711195242768 0 3.110924374808178 1.6989700043360187 1.649649864804614 0 + + [TA]ADDSSVK{I|L};TAADDSSVK{I|L};[TA]ADDSSV{I|L}K;{[QD]|[EN]|[WG]|[KD]|[RS]}DDSSVK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDSSV{I|L}K;[TA]ADD[KT][TA]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DD[KT][TA]{I|L} 11.133;10.758;10.639;8.2962;7.802;6.1963;3.3597 +;+;-;-;-;-;- + 431 NaN NaN 263532.6 NaN 3498 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5627 34.867 NaN 319560 35 0 115560 0.261 + 25060 SAARDDAVF 9 36 476.2303002884569 950.4460476437138 2 476.2301025390625 MULTI HCD FTMS 0 0 0 5625 195691.140625 0.4158538784924402 -3 0.0664520263671875 2 Unmodified _SAARDDAVF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 17.11289562659939 0.2125047172822487 2 AV{M(Oxidation (M))|F} 3 6 36.198 0 0 3.8085 0 0 615.26371962715 0 615.26371962715 0 20.713337517843655 0 0 0 1 0 0 0 + AV{M(Oxidation (M))|F} 3.8085 + + 41 NaN NaN 135784 NaN 3499 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5628 34.871 NaN 237410 35 0 20798 0.261 + 24519 RYLEKSGVL 9 60 532.8084788813801 1063.60240482956 2 532.8084716796875 MULTI HCD FTMS 0 0 0 5625 117460.8671875 1 0 0 3 Unmodified _RYLEKSGVL_ ENSG00000214114|ENST00000397572|MYCBP;ENST00000495043.5_1_1:39330344-39338774:-|nuORF 40.23920728925047 0.06424668180817725 2 [YR]{I|L}EKSGV{I|L} 9 0 + 57.547 0 0 5.4106 5.4106 88.698 0 0 0 9.889917747712644 36.57821281369209 9.889917747712644 10.956837818197798 0 0.4247425010840047 0 0.75 0.6237125054200234 + + [YR]{I|L}EKSGV{I|L};[YR]{I|L}EKV[SG]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}K{[QN]|[E{I|L}]|[KN]}YGV{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}K{[QN]|[E{I|L}]|[KN]}YR{I|L};[KS][VG]{[QN]|[E{I|L}]|[KN]}YGV{I|L};[KS][VG]{[QN]|[E{I|L}]|[KN]}YR{I|L};[TP][H{I|L}][Q{I|L}]SGV{I|L} 5.4106;4.3804;2.7075;2.6644;1.5815;1.5334;1.0934 +;-;-;-;-;-;- + 197 NaN NaN 135098.8 NaN 3500 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5629 34.874 NaN 277110 35 0 66572 0.261 -1 LPELPCLVC 9 50 522.2665321372752 1042.5185113413504 2 522.2662963867188 MULTI HCD FTMS 0 0 0 5625 89502.796875 0.39160363239303086 6 -0.1493377685546875 4 Carbamidomethyl (C) _LPELPC(Carbamidomethyl (C))LVC_ ENST00000295981.7_1_3:9959180-9959693:+|nuORF 23.1484247019978 0.1603590852062899 2 {I|L}PE 3 -1 48.94 0 0 4.6944 0 0 0 700.3161715143186 700.3161715143186 23.745980483695774 0 0 0 0 0 2 0.4247425010840047 0 {I|L}PE 4.6944 + + 37 + NaN NaN 125392.3 NaN 3501 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5630 34.878 NaN 130330 35 0 42356 0.261 -1 RYLEKPMEI 9 32 597.8131771484126 1193.611801363625 2 597.813232421875 MULTI HCD FTMS 0 0 0 5625 56269.8125 0.061194338961026336 19 -0.451995849609375 5 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 10.799506525563784 0.2670509983294061 2 K[PA][YV]{I|L} 6 -1 19.666 0 0 1.6476 0 0 504.2240467755875 0 504.2240467755875 0 10.713337517843657 0 0 0 1 0 0 0 K[PA][YV]{I|L} 1.6476 - 22 NaN NaN 97741.8 NaN 3502 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5631 34.881 NaN 109430 35 0 11554 0.262 + 31257 VVSTHEQVL 9 40 506.27680190730234 1010.5390508814047 2 506.2766418457031 MULTI HCD FTMS 0 0 0 5625 28696.8046875 0.6096728286949928 -1 0.013336181640625 6 Unmodified _VVSTHEQVL_ CON__P02533;ENSG00000186847|ENST00000167586|KRT14;ENST00000417510.5_1_17:16721458-16722199:-|nuORF;ENST00000425692.6_1_17:16721458-16722262:-|nuORF;LGALS3BP-KRT14|1|fusion 9.38312468134398 0.279288223203164 2 V{I|L} 2 7 25.969 0 0 2.5698 0 0 780.3758164138798 0 780.3758164138798 0 11.365006360318688 0 0 0 0.5 0 0 0 + V{I|L} 2.5698 + + 7 NaN NaN 105876 NaN 3503 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5632 34.884 NaN 43752 35 0 5166.5 0.261 -1 ETPYKCEECC 10 20 459.17209456794615 NaN 0 459.1717834472656 PEAK HCD FTMS 0 0 0 5625 13372.228515625 0.7387526735160759 -2 0.043212890625 7 3 Carbamidomethyl (C) _ETPYKC(Carbamidomethyl (C))EEC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ZNF208|p.G459C|1|0.22|ENSG00000160321|chr19:21973659-21973659|C/A|missense_variant 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95460.3 NaN 3504 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5633 34.888 NaN 23653 35 0 4729.5 0.261 -1 NEMQPNGKVF 10 18 590.276831208739 1178.539109484278 2 590.2760009765625 MULTI HCD FTMS 0 0 0 5625 7993.07373046875 0.49328848867415515 -3 0.0664520263671875 8 Oxidation (M) _NEM(Oxidation (M))QPNGKVF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 2.735195868890462 0.4608258780945842 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7792 0 0 914.40043837715 0 914.40043837715 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.7792 + + 1 NaN NaN 80274.7 NaN 3505 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5634 34.891 NaN 28612 35 0 3663.7 0.261 + 5309 FFITALGVLN 10 26 547.8161354397685 NaN 0 547.804443359375 PEAK HCD FTMS 0 0 0 5625 5590.04150390625 1 0 0 9 Unmodified _FFITALGVLN_ REV__CON__Q3SZ57 1.3295316138638542 0.339046394236575 2 D 1 -1 6.9897 0 0 0.63914 0 0 185.28014578012431 790.2855929010374 975.5657386811617 0 0 0 0 0 0 0 0 0 D 0.63914 - 2 + NaN NaN 89131.1 NaN 3506 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5635 34.894 NaN 53756 35 0 14412 0.261 + -1 TMCKWTTM 8 27 509.21432924100793 NaN 0 508.7308654785156 PEAK HCD FTMS 0 0 0 5625 8513.322265625 0.36351538398733624 19 -0.451995849609375 10 Oxidation (M) _TM(Oxidation (M))CKWTTM_ REV__ENST00000357947.3_1_10:98130057-98133559:-|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93119.6 NaN 3507 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5636 34.897 NaN 44369 35 0 7274.4 0.261 + 11845 KETKEGLFA 9 34 511.7797212496517 1021.5448895661034 2 511.7792663574219 MULTI HCD FTMS 0 0 0 5625 5492.75830078125 0.27201922527264144 -3 0.0664520263671875 11 Unmodified _KETKEGLFA_ REV__ACACA|p.N571Ifs*45|1|0.16|ENSG00000278540|chr17:37257817-37257817|T/-|frameshift_variant 3.5964929083625545 0.32375295897743744 2 KE 2 -1 17.959 0 0 1.758 0 0 0 761.3903902643186 761.3903902643186 14.859856381998782 0 0 0 0 0 0 0 0 KE 1.758 + + 2 + NaN NaN 104066 NaN 3508 2126 5625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5638 34.903 NaN 69290 35 0 6362.5 0.327 + 14131 LADGPKNNK 9 46 478.76183135980597 955.509109786412 2 478.7615051269531 MULTI HCD FTMS 0 0 0 5637 20373.685546875 0.3595023865440383 -5 0.13943099975585938 1 Unmodified _LADGPKNNK_ REV__ENSG00000174945|ENST00000683327|AMZ1;REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF;REV__nc|ENSG00000174945|Q400G9-2|AMZ1 13.90604991867851 0.24021115267848145 2 {I|L}AD 3 -1 49.425 0 0 5.1726 0 0 0 653.3352144830686 653.3352144830686 47.43501263708417 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0 {I|L}AD 5.1726 + + 9 + NaN NaN 89553.1 NaN 3509 2127 5637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5639 34.907 NaN 16252 35 0 5425.5 0.261 -1 0 14 623.8231175259798 1245.6316821187595 2 623.8231811523438 MULTI HCD FTMS 0 0 0 5637 9804.1806640625 0.00674117461569773 35 -0.8826065063476562 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92126.7 NaN 3510 2127 5637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5640 34.911 NaN 35490 35 0 6173.2 0.261 + -1 SSDLLHCYP 9 22 546.2449526635525 1090.4753523939048 2 546.2454833984375 MULTI HCD FTMS 0 0 0 5637 15916.5888671875 0.2835690477767929 44 -1.1162681579589844 3 Carbamidomethyl (C) _SSDLLHC(Carbamidomethyl (C))YP_ REV__ENSG00000145916|ENST00000313386|RMND5B;REV__ENST00000515360.5_1_5:177569546-177575030:+|nuORF;REV__nc|ENSG00000145916|Q96G75-2|RMND5B 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93148.9 NaN 3511 2127 5637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5641 34.914 NaN 17599 35 0 3520.9 0.261 + 23313 RISDFHETY 9 18 584.2757568359375 NaN 0 584.2757568359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RISDFHETY_ ENSG00000183337|ENST00000378444|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90224.6 NaN 3512 2127 5637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5643 34.919 NaN 452070 35 0 36775 0.327 + 1477 AYSVEHNQL 9 78 530.7564712142082 1059.4983894952163 2 530.7564697265625 MULTI HCD FTMS 0 0 0 5642 237394.875 0.4302245622706978 -4 0.09960556030273438 1 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 70.33199760932243 0.0089807860198535 2 AYSVEHAQ 8 2 73.458 0 0 6.9333 0 0 0 171.0886629693969 171.0886629693969 43.4710258904199 0 0 0 0 1.1677353201839438 2 0.3494850021680094 1.4436726795685342 AYSVEHAQ 6.9333 - 693 + NaN NaN 171762.7 NaN 3513 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5644 34.924 NaN 603660 35 0 76569 0.261 + 15611 LPEDAGLSLE 10 74 522.2665321372752 1042.5185113413504 2 522.7825927734375 MULTI HCD FTMS 0 0 0 5642 22717.708984375 0.1890483307821258 8 -0.1858062744140625 2 Unmodified _LPEDAGLSLE_ ENST00000316757.3_1_19:3760164-3761632:-|nuORF 25.399314129420986 0.2735354021946395 2 {I|L}PE 3 7 39.327 0 0 3.7723 0 0 0 700.3153170221311 700.3153170221311 14.774823528805626 0 0 0 0 0 1.6989700043360187 0.6139829889124311 0 + {I|L}PE 3.7723 + + 68 + NaN NaN 196483.9 NaN 3514 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5645 34.927 NaN 186350 35 0 15514 0.261 + 15053 LLSQHKIEP 9 59 532.8084788813801 1063.60240482956 2 532.8086547851562 MULTI HCD FTMS 0 0 0 5642 87807.515625 0.7475469722595777 2 -0.053142547607421875 3 Unmodified _LLSQHKIEP_ REV__ENSG00000081026|ENST00000307546|MAGI3;REV__nc|ENSG00000081026|Q5TCQ9-1|MAGI3 13.90604991867851 0.24021115267848145 2 A{M(Oxidation (M))|F}[WK]EA{M(Oxidation (M))|F} 7 -1 33.773 0 0 3.1753 0 0 166.20449571897012 0 166.20449571897012 0 14.898641557451523 0 0 0 0 0 0.4247425010840047 0.805462187404089 A{M(Oxidation (M))|F}[WK]EA{M(Oxidation (M))|F} 3.1753 - 85 + NaN NaN 113015 NaN 3515 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5646 34.931 NaN 188850 35 0 32080 0.261 -1 VDCGTEETSL 10 35 555.7343544632182 1109.4541559932363 2 555.7348022460938 MULTI HCD FTMS 0 0 0 5642 90367.0078125 0.7011846570768598 -14 0.3121147155761719 4 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 13.042465956692817 0.38911719078024076 2 TS{I|L} 3 -1 38.188 0 0 3.442 0 0 790.2792696633327 0 790.2792696633327 0 31.197887582883936 0 0 0 1 0 0.5 0 TS{I|L} 3.442 + + 11 NaN NaN 109408.2 NaN 3516 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5647 34.934 NaN 163430 35 0 18035 0.262 + 25104 SAEPSPTVM 9 45 467.7129990212783 933.4114451093566 2 467.712890625 MULTI HCD FTMS 0 0 0 5642 93963.8125 0.8237812697856933 -5 0.12284469604492188 5 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 78.14939416004806 0.006451203201226903 2 {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F} 9 0 {[SA]|[TG]}E + + 57.789 10.458 3.6423 6.1912 6.1912 64.216 0 0 0 0 38.35236478732389 0 0 0 1.6694451763165201 0 1.1989700043360187 0 + + {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F} 6.1912 + + 84 + NaN NaN 117064.7 NaN 3517 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5648 34.937 NaN 203010 35 0 29841 0.261 + 35162 YVHMVTHF 8 40 525.247291806129 1048.480030679058 2 525.2471923828125 MULTI HCD FTMS 0 0 0 5642 42373.3125 0.29999936944524125 5 -0.11944580078125 6 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 46.92087301778293 0.1468278106890452 2 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 56.024 0 0 5.3433 5.3433 91.453 0 0 0 4.151603310239906 4.151603310239906 4.151603310239906 35.17220322351953 0 1.742992819099939 2 0 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F} 5.3433;1.9887;1.9887 +;-;- + 62 NaN NaN 120163 NaN 3518 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5649 34.941 NaN 101790 35 0 16530 0.261 -1 YPDSKDLTM 9 32 543.2445868585514 1084.4746207839028 2 543.2445678710938 MULTI HCD FTMS 0 0 0 5642 46052.6484375 0.7592380956306264 -1 0.016597747802734375 7 Oxidation (M) _YPDSKDLTM(Oxidation (M))_ ENSG00000010219|ENST00000543431|DYRK4;ENST00000536137.1_1_12:4714126-4719451:+|nuORF;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4 36.506200033944 0.08138327636155518 2 YPDS 4 -1 58.404 0 0 5.3855 0 0 0 619.2758272760374 619.2758272760374 33.187587626244124 0 0 0 0 1 1.5228787452803376 0.4247425010840047 0 YPDS 5.3855 + + 78 + NaN NaN 100852.5 NaN 3519 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5650 34.944 NaN 78321 35 0 13785 0.261 + 1453 AYSLRVELQ 9 28 539.7985094580721 1077.582465982944 2 539.8106079101562 MULTI HCD FTMS 0 0 0 5642 5585.92626953125 0.6406442676670893 4 -0.09294509887695312 8 Unmodified _AYSLRVELQ_ ENSG00000101280|ENST00000381922|ANGPT4;nc|ENSG00000101280|Q9Y264-2|ANGPT4 4.3292370932331545 0.3181982124262546 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3 6 30.458 0 0 2.8265 0 0 0 741.4165743463499 741.4165743463499 23.46787486224656 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 2.8265 - 10 + NaN NaN 107863 NaN 3520 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5651 34.947 NaN 41089 35 0 10693 0.261 + -1 WWPCMWCPE 9 22 627.2329486986955 1252.451344464191 2 627.2340698242188 MULTI HCD FTMS 0 0 0 5642 28382.328125 0.2580765009201902 23 -0.5581092834472656 9 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94506.7 NaN 3521 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5652 34.951 NaN 92451 35 0 15654 0.263 -1 EPEPVQPGM 9 37 500.2260690916039 998.4375852500078 2 500.22674560546875 MULTI HCD FTMS 0 0 0 5642 23065.595703125 0.8515730318038732 -1 0.016597747802734375 10 Oxidation (M) _EPEPVQPGM(Oxidation (M))_ ENSG00000104228|ENST00000305364|TRIM35;nc|ENSG00000104228|Q9UPQ4-2|TRIM35 15.847184025352803 0.2234401846867398 2 Q[WD] 3 -1 16.567 0 0 1.6593 0 0 551.2589791482485 0 551.2589791482485 0 9.577118610328345 0 0 0 0.8494850021680094 0 0 0 Q[WD] 1.6593 - 45 + NaN NaN 97660.4 NaN 3522 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5653 34.954 NaN 61945 35 0 8430.4 0.261 + 9111 HPFPDHEL 8 36 496.2352689577343 990.4559849822687 2 496.23480224609375 MULTI HCD FTMS 0 0 0 5642 22342.99609375 0.6322335708784276 6 -0.1326904296875 11 Unmodified _HPFPDHEL_ ENSG00000159842|ENST00000302538|ABR;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-2|ABR;nc|ENSG00000159842|Q12979-4|ABR;VPS53-ABR|1|fusion 23.1484247019978 0.4234759064137959 2 {M(Oxidation (M))|F}C{I|L} 3 6 30.445 0 0 3.0739 0 0 609.2740345685562 0 609.2740345685562 0 26.46591250700361 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}C{I|L} 3.0739 - 10 NaN NaN 98061.2 NaN 3523 2128 5642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5655 34.959 NaN 1730300 35 0 181120 0.326 + 30685 VPENHSVAL 9 89 483.2561437809302 964.4977346286604 2 483.25616455078125 MULTI HCD FTMS 0 0 0 5654 1289315.25 0.6922084984325432 -5 0.13953018188476562 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 117.76058876431921 0.001675465467887476 2 [VP]ENHSVA{I|L} 9 0 + 91.964 0 0 9.5349 9.5349 92.912 0 0 0 14.725540331418898 14.725540331418898 14.725540331418898 9.075221787320501 0 2.2416440611282624 1.3979400086720375 1.0451140161145327 0.555462187404089 + + [VP]ENHSVA{I|L};[VP]ENHSAV{I|L};VPENHSVA{I|L};[VP]EGGHSVA{I|L};[VP]ENHSA{I|L}V;[EP]VNHSVA{I|L};[VP]EGGHSAV{I|L};VPEGGHSVA{I|L};[EP]VNHSAV{I|L};[EP]NVHSVA{I|L} 9.5349;8.594;8.0082;8.0043;7.7167;7.5657;7.0634;7.0535;6.6248;6.6069 +;-;+;-;-;-;-;-;-;- + 3387 NaN NaN 342023.4 NaN 3524 2129 5654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5656 34.964 NaN 561570 35 0 57735 0.261 + 1549 AYVHMVTHF 9 87 560.7656657896405 1119.5167786460809 2 560.7657470703125 MULTI HCD FTMS 0 0 0 5654 261458 0.20164780044226963 7 -0.14588165283203125 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 100.76 0 0 9.0002 9.0002 90.665 0 0 0 4.5460360760022525 4.5460360760022525 4.5460360760022525 4.5460360760022525 0 2.853917193908117 2 0.5387254899964358 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MG]|[TS]}{[QV]|[N{I|L}]|[RA]|[KV]}HWE;{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}NAAV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{[QV]|[N{I|L}]|[RA]|[KV]}{[MG]|[TS]}{[ES]|[DT]|[{I|L}C]};A[KC][PA]{M(Oxidation (M))|F}VD[RN] 9.0002;8.5942;7.8177;5.1098;4.6554;4.4652;3.559;3.5133;3.4602;3.3309 +;+;-;-;-;-;-;-;-;- + 1158 + NaN NaN 174238.6 NaN 3525 2129 5654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5657 34.967 NaN 48660 35 0 8810.4 0.261 + 9701 HVTQEDFEM 9 24 576.2374500618795 1150.4603471905589 2 576.2373657226562 MULTI HCD FTMS 0 0 0 5654 37114.09375 0.3234499593253814 30 -0.7365531921386719 3 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 40.23920728925047 0.06424668180817725 2 ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5 4 61.696 0 0 5.3627 0 0 465.2343006818375 0 465.2343006818375 0 61.695925227640984 0 0 0 2.0994850021680094 0 0.4247425010840047 0 + ED{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.3627 + + 34 NaN NaN 96096.5 NaN 3526 2129 5654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5659 34.973 NaN 158790 35 0 24679 0.327 + 12990 KYINTDAKF 9 43 550.2935029854779 1098.5724530377556 2 550.292724609375 MULTI HCD FTMS 0 0 0 5658 119751.765625 0.7154205582177031 2 -0.03980255126953125 1 Unmodified _KYINTDAKF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 67.83816525789305 0.009787749748478139 2 [YK]{I|L}NTDAK{M(Oxidation (M))|F} 9 0 + 70.5 0 0 6.4174 6.4174 89.216 0 0 0 7.944539621753535 52.54100322985387 7.944539621753535 9.208187539523749 0 0.9247425010840047 0 0.7302046884880937 1.5356668758921828 + + [YK]{I|L}NTDAK{M(Oxidation (M))|F};[YK]{I|L}GGTDAK{M(Oxidation (M))|F};[YK]{[SA]|[TG]}{[VA]|[{I|L}G]}DAK{M(Oxidation (M))|F};[YK]{I|L}NA{[ES]|[DT]|[{I|L}C]}K{M(Oxidation (M))|F};[YK]{I|L}GGA{[ES]|[DT]|[{I|L}C]}K{M(Oxidation (M))|F} 6.4174;5.5792;3.8039;3.2285;2.3903 +;-;-;-;- + 122 NaN NaN 111688.5 NaN 3527 2130 5658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5660 34.977 NaN 90046 35 0 8928.5 0.263 + -1 KYMIEKIKF 9 40 405.8984129303133 1214.67340939114 3 405.89825439453125 MULTI HCD FTMS 0 0 0 5658 30642.4296875 0.25835815487283725 10 -0.2395782470703125 2 Oxidation (M) _KYM(Oxidation (M))IEKIKF_ REV__ENSG00000059588|ENST00000040877|TARBP1 7.101721422024254 0.29718071671418667 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5943821468024 0 1049.5943821468024 0 7.742275032520141 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 3 + NaN NaN 93154.6 NaN 3528 2130 5658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5661 34.981 NaN 17822 35 0 3326.7 0.261 + -1 CCWCPFFL 8 15 566.7254499451043 1131.4363469570085 2 566.7251586914062 MULTI HCD FTMS 0 0 0 5658 8931.0556640625 0.4215964940199079 -11 0.2822761535644531 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))WCPFFL_ REV__ENST00000394095.6_1_3:101062560-101062668:-|nuORF 0.7936320650641473 0.540814922690045 2 T 1 -1 2.2185 0 0 0.19608 0 0 547.6640824079835 479.7071627252563 1027.3712451332399 0 0 0 0 0 0 0 0 0 T 0.19608 - 1 + NaN NaN 99235.8 NaN 3529 2130 5658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5662 34.984 NaN 20342 35 0 4325.7 0.261 -1 MWFIRCRL 8 18 570.7937226811578 1139.5728924291154 2 570.7930297851562 MULTI HCD FTMS 0 0 0 5658 6607.95556640625 0.20554408099690366 22 -0.5346946716308594 4 Oxidation (M) _M(Oxidation (M))WFIRCRL_ ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-7|TSC2 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83927.1 NaN 3530 2130 5658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5664 34.989 NaN 477580 35 0 98444 0.327 + 27513 TAADDSSVKL 10 56 503.75626520159346 1005.497977469987 2 503.7562561035156 MULTI HCD FTMS 0 0 0 5663 159718.921875 0.16081413650075485 7 -0.16988754272460938 1 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 61.08992128646608 0.03745793995309655 2 [TA]ADDS[VS]K{I|L} 10 0 + 69.123 0 0 6.8745 6.8745 93.452 0 0 0 15.138050198288013 57.885409676892934 15.138050198288013 26.01342204748164 0 2.274227503252014 1.6989700043360187 0.3807196863200844 0 + + [TA]ADDS[VS]K{I|L};[TA]ADD[KT][TA]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DDS[VS]K{I|L};[TA]ADD[KT]{I|L}[TA];{[QD]|[EN]|[WG]|[KD]|[RS]}DD[KT][TA]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}DD[KT]{I|L}[TA] 6.8745;4.2873;4.0379;3.8128;1.4508;0.97624 +;-;-;-;-;- + 217 NaN NaN 150560.1 NaN 3531 2131 5663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5665 34.994 NaN 134910 35 0 14995 0.262 + 28256 TLLPFLYTLF 10 51 409.9057362128441 1226.6953792387324 3 409.9057312011719 MULTI HCD FTMS 0 0 0 5663 25558.345703125 0.12814279974229398 -17 0.3818511962890625 2 Unmodified _TLLPFLYTLF_ ENSG00000090402|ENST00000264382|SI;SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant 3.944395688203298 0.4544253912184634 2 {I|L}{M(Oxidation (M))|F} 2 8 25.969 0 0 2.117 0 0 948.5642877926108 0 948.5642877926108 0 8.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.117 + + 22 NaN NaN 107439.4 NaN 3532 2131 5663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5666 34.997 NaN 110530 35 0 18933 0.261 + 2470 DRGGSPSM 8 54 403.67697579007586 805.3393986469517 2 403.6768798828125 MULTI HCD FTMS 0 0 0 5663 20701.109375 0.7166468803284672 -1 0.01659393310546875 3 Unmodified _DRGGSPSM_ ENSG00000161180|ENST00000292779|CCDC116;nc|ENSG00000161180|Q8IYX3-1|CCDC116;nc|ENSG00000161180|Q8IYX3-3|CCDC116 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 7 16.99 0 0 2.1096 0 0 640.2604629553487 0 640.2604629553487 0 1.5051499783199063 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 2.1096 + + 15 + NaN NaN 108879.8 NaN 3533 2131 5663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5667 35 NaN 81469 35 0 13332 0.261 + 22632 QVNNITEFI 9 36 539.2822686962164 1076.5499844592327 2 539.2823486328125 MULTI HCD FTMS 0 0 0 5663 16715.10546875 0.22783188900080642 -12 0.2988700866699219 4 Unmodified _QVNNITEFI_ ENSG00000176540|ENST00000319813|OR4C5 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92240.5 NaN 3534 2131 5663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5668 35.004 NaN 33064 35 0 6241.7 0.261 -1 MQDPNFHTM 9 29 568.7285890252479 1135.4426251172956 2 568.72802734375 MULTI HCD FTMS 0 0 0 5663 9773.6708984375 0.6871204853613122 -1 0.01659393310546875 5 Oxidation (M) _MQDPNFHTM(Oxidation (M))_ ENSG00000140396|ENST00000452400|NCOA2;ENST00000518287.6_1_8:71025838-71050550:-|nuORF 3.5964929083625545 0.32375295897743744 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.0986 0 0 970.3964958221769 0 970.3964958221769 0 2.016675202793719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0986 + + 2 + NaN NaN 88786.3 NaN 3535 2131 5663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5669 35.007 NaN 10654 35 0 4161.6 0.261 -1 MCNWHMMY 8 8 582.1901480460699 NaN 0 582.1909790039062 PEAK HCD FTMS 0 0 0 5663 11105.67578125 0.6666364970229948 3 -0.06295394897460938 6 3 Oxidation (M) _M(Oxidation (M))CNWHM(Oxidation (M))M(Oxidation (M))Y_ ENST00000568509.2_1_16:89565381-89565444:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101067.3 NaN 3536 2131 5663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5671 35.012 NaN 476550 35 0 192270 0.326 + 25061 SAARDDAVF 9 43 476.2303002884569 950.4460476437138 2 476.2301940917969 MULTI HCD FTMS 0 0 0 5670 319263.5 0.6784515860658737 3 -0.066314697265625 1 Unmodified _SAARDDAVF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 26.268140514670165 0.13340543277302316 2 VA{[MG]|[TS]}YV{M(Oxidation (M))|F} 7 6 42.791 0 0 4.5022 0 0 165.07943445483698 0 165.07943445483698 0 37.306679035102164 0 0 0 0 0 0.805462187404089 0 VA{[MG]|[TS]}YV{M(Oxidation (M))|F} 4.5022 - 59 + NaN NaN 154873.8 NaN 3537 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5672 35.017 NaN 83118 35 0 28925 0.261 -1 RYLEKPMEI 9 18 597.8131771484126 1193.611801363625 2 597.813232421875 MULTI HCD FTMS 0 0 0 5670 42559.76171875 0.0462844350995074 25 -0.6337471008300781 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 KG 2 -1 13.583 0 0 1.138 0 0 504.2260558534038 501.24933801822505 1005.4753938716289 0 0 0 0 0 0.5 0 0 0 KG 1.138 - 6 + NaN NaN 109902.7 NaN 3538 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5673 35.02 NaN 65108 35 0 10303 0.262 -1 EPEPVQPGM 9 25 500.2260690916039 998.4375852500078 2 500.24072265625 MULTI HCD FTMS 0 0 0 5670 8633.3916015625 0.3187415385025849 3 -0.066314697265625 3 Oxidation (M) _EPEPVQPGM(Oxidation (M))_ ENSG00000104228|ENST00000305364|TRIM35;nc|ENSG00000104228|Q9UPQ4-2|TRIM35 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4627 0 0 833.3918832009829 0 833.3918832009829 0 2.6413688858352184 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4627 + + 36 + NaN NaN 94036.6 NaN 3539 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5674 35.024 NaN 57596 35 0 5949.5 0.261 -1 SSCHCSYS 8 29 494.1685442945044 986.3225356558088 2 494.16845703125 MULTI HCD FTMS 0 0 0 5670 15466.671875 0.8223112209888666 -2 0.03980255126953125 4 2 Carbamidomethyl (C) _SSC(Carbamidomethyl (C))HC(Carbamidomethyl (C))SYS_ ENST00000483272.1_1_3:113798714-113804748:+|nuORF 0.6903765706972694 0.5409681170271811 2 AE 2 -1 7.9588 0 0 0.80692 0 0 170.90934093100253 612.3128756158811 783.2222165468836 0 0 0 0 0 0 0 0 0 AE 0.80692 - 13 + NaN NaN 83205 NaN 3540 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5675 35.027 NaN 43256 35 0 5602.9 0.261 + 9635 HTSNFWVT 8 33 496.2352689577343 990.4559849822687 2 496.2353820800781 MULTI HCD FTMS 0 0 0 5670 13646.1279296875 0.3861407016968307 10 -0.23957443237304688 5 Unmodified _HTSNFWVT_ REV__ASAH2|p.L439F|1|0.25|ENSG00000188611|chr10:50211047-50211047|G/A|missense_variant 4.3292370932331545 0.5355693454741696 2 N 1 -1 14.604 0 0 1.4745 0 0 858.4055832262125 0 858.4055832262125 0 14.604093769761874 0 0 0 0 0 0 0 N 1.4745 + + 2 + NaN NaN 110158.6 NaN 3541 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5676 35.03 NaN 24630 35 0 4121.4 0.261 + 14415 LELHQQEQ 8 19 512.7564110937228 1023.4982692542457 2 512.256103515625 MULTI HCD FTMS 0 0 0 5670 2674.650390625 0.2928238723706075 -1 0.0232086181640625 6 Unmodified _LELHQQEQ_ ENSG00000057704|ENST00000261226|TMCC3 2.302733041254933 0.5385759549224092 2 W 1 8 6.9897 0 0 0.68292 0 0 94.07060919740805 740.3232515924436 834.3938607898517 0 0 0 0 0 0 0 0 0 W 0.68292 - 5 + NaN NaN 91068.2 NaN 3542 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5677 35.034 NaN 17933 35 0 3195.8 0.261 -1 FCCRKCLIP 9 19 570.2797529289123 NaN 0 570.2938232421875 PEAK HCD FTMS 0 0 0 5670 5377.2099609375 1 0 0 7 Carbamidomethyl (C) _FCCRKC(Carbamidomethyl (C))LIP_ ENST00000311177.6_1_17:46699388-46699802:-|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84938.7 NaN 3543 2132 5670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5679 35.039 NaN 91109 35 0 12265 0.327 + 14139 LADRGNPLT 9 38 478.76183135980597 955.509109786412 2 478.76165771484375 MULTI HCD FTMS 0 0 0 5678 51578.25390625 0.910120328028493 1 -0.01324462890625 1 Unmodified _LADRGNPLT_ REV__ENSG00000178209|ENST00000345136|PLEC;REV__nc|ENSG00000178209|Q15149-2|PLEC;REV__nc|ENSG00000178209|Q15149-3|PLEC;REV__nc|ENSG00000178209|Q15149-5|PLEC;REV__nc|ENSG00000178209|Q15149-6|PLEC;REV__nc|ENSG00000178209|Q15149-7|PLEC;REV__nc|ENSG00000178209|Q15149-8|PLEC;REV__nc|ENSG00000178209|Q15149-9|PLEC;REV__nc|ENSG00000178209|Q15149|PLEC 21.536976647645854 0.1742816388551942 2 {I|L}AD 3 -1 53.416 0 0 5.5904 0 0 0 653.3376679664318 653.3376679664318 46.42667503568731 0 0 0 0 1 1.5228787452803376 0.5 0 {I|L}AD 5.5904 + + 18 + NaN NaN 96634.3 NaN 3544 2133 5678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5680 35.043 NaN 26989 35 0 3341.8 0.261 -1 NEMQPNGKVF 10 24 590.276831208739 1178.539109484278 2 590.2772216796875 MULTI HCD FTMS 0 0 0 5678 13903.0693359375 0.8580208680565244 4 -0.10024261474609375 2 Oxidation (M) _NEM(Oxidation (M))QPNGKVF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 7.608950283845883 0.4350283211712914 2 V{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.1396 0 0 914.3901234357437 0 914.3901234357437 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.1396 + + 2 NaN NaN 94006 NaN 3545 2133 5678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5681 35.047 NaN 33551 35 0 6204 0.261 + 5429 FHVVHIDR 8 23 511.7797212496517 1021.5448895661034 2 511.7809753417969 MULTI HCD FTMS 0 0 0 5678 8730.994140625 0.43238717816055766 4 -0.10024261474609375 3 Unmodified _FHVVHIDR_ REV__CON__Q28107 0.7936320650641473 0.540814922690045 2 Y 1 -1 5.4846 0 0 0.53689 0 0 347.74387745848463 507.72846399478755 855.4723414532722 0 0 0 0 0 0 0 0 0 Y 0.53689 - 1 + NaN NaN 86540.8 NaN 3546 2133 5678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5683 35.052 NaN 800350 35 0 66134 0.327 + 1478 AYSVEHNQL 9 87 530.7564712142082 1059.4983894952163 2 530.7565307617188 MULTI HCD FTMS 0 0 0 5682 467318.375 0.8469089458036059 2 -0.0531158447265625 1 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 155.02607137521346 3.513045939247001E-06 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHNQ{I|L} 9 0 + 75.991 0 0 7.1724 7.1724 90.59 0 0 0 6.323070156692609 55.368522872361055 6.323070156692609 9.208187539523749 0 2.412437995416459 2 0.9749073637206093 0.4247425010840047 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHNQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHGGQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVEHN[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA][NS]AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA]Q[SG]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA][NS]{I|L}AY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA]E[KG]AY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA][NS]A{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA]Q[VS]AY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TA]E[KQ]Y 7.1724;6.3033;6.3033;4.9191;4.4231;4.2744;3.9445;3.8764;3.7783;3.4713 +;-;-;-;-;-;-;-;-;- + 1125 NaN NaN 227453.7 NaN 3547 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5684 35.056 NaN 910750 35 0 116220 0.261 + 14742 LHSPNVGALH 10 74 522.7825229976974 1043.5504930621946 2 522.7828979492188 MULTI HCD FTMS 0 0 0 5682 442467.84375 0.8922594647188453 2 -0.0531158447265625 2 Unmodified _LHSPNVGALH_ REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF 43.85829265575387 0.11192494793849486 2 [H{I|L}]A[PA]TNAH{I|L} 10 -1 + 57.841 0 0 5.5427 5.5427 84.019 0 0 0 1.4705446572248349 43.23654169386643 1.4705446572248349 1.9629464514396844 0 1.2614393726401687 1.154901959985743 0.3807196863200844 0.6505149978319906 [H{I|L}]A[PA]TNAH{I|L};[HA]{I|L}[PA]TNAH{I|L};[YR]AVTNAH{I|L};[YR]AS{I|L}NAH{I|L};[YR]AVTGGAH{I|L};[H{I|L}]A[PA]TGGAH{I|L};[YR]AS{I|L}GGAH{I|L};[HA]{I|L}[PA]TGGAH{I|L} 5.5427;5.3546;4.954;4.8215;4.0716;4.0411;3.9391;3.853 -;-;-;-;-;-;-;- 376 NaN NaN 224171.6 NaN 3548 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5685 35.06 NaN 107040 35 0 11480 0.261 + 4445 EYGQVNHAL 9 44 515.7517068738292 1029.4888608144583 2 515.751953125 MULTI HCD FTMS 0 0 0 5682 26442.552734375 0.6490667325581306 -1 0.01324462890625 3 Unmodified _EYGQVNHAL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 11.640296217721598 0.25978676193971967 2 [YE]{[QG]|[NA]}VNH[{I|L}A] 9 0 + 14.383 0 0 1.3971 1.3971 84.951 0 0 0 7.3933246300998725 4.7620364415941925 4.7620364415941925 9.208187539523752 0 0 0 0 0 + + [YE]{[QG]|[NA]}VNH[{I|L}A];[YE]{[QG]|[NA]}VGGH[{I|L}A] 1.3971;0.50266 +;- + 33 + NaN NaN 110836.2 NaN 3549 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5686 35.063 NaN 56565 35 0 10188 0.261 + -1 VHIQAETM 8 32 472.7290868203878 943.4436207075756 2 472.7291564941406 MULTI HCD FTMS 0 0 0 5682 23632.765625 0.674310126430613 3 -0.08699798583984375 4 Oxidation (M) _VHIQAETM(Oxidation (M))_ REV__ENSG00000151466|ENST00000281142|SCLT1;REV__nc|ENSG00000151466|Q96NL6-2|SCLT1;REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant 7.289230182591677 0.5311777711368266 2 T{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.2826 0 0 677.3504333069882 0 677.3504333069882 0 30.969100130080562 0 0 0 1 0 0 0 T{M(Oxidation (M))|F} 3.2826 + + 6 + NaN NaN 86954.5 NaN 3550 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5687 35.067 NaN 24734 35 0 4254 0.261 + 19546 NSLVEIVLEHD 11 19 634.3302695453574 1266.6459861575147 2 634.3301391601562 MULTI HCD FTMS 0 0 0 5682 6731.31396484375 0.42348094366149763 -1 0.01324462890625 5 Unmodified _NSLVEIVLEHD_ REV__ENSG00000115290|ENST00000263915|GRB14;REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF;REV__nc|ENSG00000115290|Q14449-2|GRB14 8.745405648335112 0.3805662881914433 2 {I|L}SY 3 -1 14.922 0 0 1.178 0 0 542.2665438741147 358.17267786197505 900.4392217360898 0 0 0 0 0 0 0 0.5 0 {I|L}SY 1.178 - 11 + NaN NaN 92769.7 NaN 3551 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5688 35.07 NaN 20087 35 0 4969 0.262 + -1 QHMYASEPL 9 14 546.2449526635525 1090.4753523939048 2 546.2451782226562 MULTI HCD FTMS 0 0 0 5682 7395.21923828125 0.1317528080293117 51 -1.3197364807128906 6 Oxidation (M) _QHM(Oxidation (M))YASEPL_ REV__ENSG00000099341|ENST00000215071|PSMD8;REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86602 NaN 3552 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5689 35.073 NaN 41758 35 0 5657.4 0.261 + 28094 THSSFFVF 8 27 486.2336817554539 NaN 0 486.2330627441406 PEAK HCD FTMS 0 0 0 5682 2669.016357421875 0.35645170188440944 1 -0.026569366455078125 7 Unmodified _THSSFFVF_ REV__ENSG00000065457|ENST00000564657|ADAT1 2.577480529830294 0.38822285293237185 2 WV 2 -1 6.4537 0 0 0.66501 0 0 226.04199622399534 456.2554110162719 682.2974072402673 0 0 0 0 0 0 0 0 0 WV 0.66501 - 4 + NaN NaN 88899.9 NaN 3553 2134 5682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5691 35.079 NaN 150440 35 0 22104 0.327 + 25105 SAEPSPTVM 9 35 467.7129990212783 933.4114451093566 2 467.71282958984375 MULTI HCD FTMS 0 0 0 5690 103612.140625 0.9083682164266836 2 -0.060428619384765625 1 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 96.28474662873226 0.004361282420133734 2 {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F} 9 0 + 70.886 0 0 7.5943 7.5943 96.432 0 0 0 14.690287068896026 39.191381272259775 14.690287068896026 70.88608123206676 0 2.473197507588033 1.5228787452803376 0.7614393726401688 0 + + {[SA]|[TG]}EPSPTV{M(Oxidation (M))|F} 7.5943 + + 95 NaN NaN 112537.3 NaN 3554 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5692 35.083 NaN 133290 35 0 22336 0.261 -1 MEEEAGQTSI 10 29 555.7343544632182 1109.4541559932363 2 555.734619140625 MULTI HCD FTMS 0 0 0 5690 61667.74609375 0.4784984967873167 -7 0.15925979614257812 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 14.405379775768559 0.37636895476610294 2 SQTS{I|L} 5 -1 44.553 0 0 4.0157 0 0 575.1884022443375 0 575.1884022443375 0 44.55259398656281 0 0 0 1 0 0.5 0 SQTS{I|L} 4.0157 - 25 NaN NaN 94401 NaN 3555 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5693 35.087 NaN 92647 35 0 15199 0.261 -1 YVHMVTHF 8 28 525.247291806129 1048.480030679058 2 525.2470703125 MULTI HCD FTMS 0 0 0 5690 23294.845703125 0.16492548280858824 12 -0.2928276062011719 3 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 19.438996006549623 0.45076845602799126 2 [YV]H 3 -1 35.19 0 0 3.3562 0 0 0 646.2659553218892 646.2659553218892 24.731975075880328 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [YV]H 3.3562 + + 9 NaN NaN 95775.9 NaN 3556 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5694 35.09 NaN 36228 35 0 5684.9 0.261 -1 YPASTMTTTP 10 24 543.2445868585514 1084.4746207839028 2 543.2444458007812 MULTI HCD FTMS 0 0 0 5690 16100.103515625 0.2654312476566582 6 -0.16000747680664062 4 Oxidation (M) _YPASTM(Oxidation (M))TTTP_ ENSG00000130518|ENST00000392413|IQCN;nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN 3.2813086475875832 0.45793521633868084 2 YP 2 -1 20.969 0 0 1.9336 0 0 0 821.3386324518186 821.3386324518186 20.969100130080562 0 0 0 0 0 0 0 0 YP 1.9336 + + 1 + NaN NaN 101060.1 NaN 3557 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5695 35.093 NaN 78178 35 0 9262.1 0.261 + 27517 TAAEDNVRL 9 41 494.7559375259661 987.4973221187322 2 494.7554626464844 MULTI HCD FTMS 0 0 0 5690 29736.005859375 0.9875737550451944 -1 0.026569366455078125 5 Unmodified _TAAEDNVRL_ ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1;nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1 27.223235318498237 0.1251536255799991 2 [TA]AEA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L} 9 3 + 48.579 0 0 4.9194 4.9194 82.969 0 0 0 27.125299705980197 9.282118526775136 9.282118526775136 1.7609125905568135 0 1.4476212463643423 1.3979400086720375 0 0 [TA]AEA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L};[TA]AED{[NV]|[RG]}R{I|L};{[CP]|[EA]}[Y{I|L}][HS]R{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[HS]R{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}G[HS]R{I|L} 4.9194;4.7411;1.0483;0.74348;0.48497 -;+;-;-;- + 63 + NaN NaN 106766.7 NaN 3558 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5696 35.097 NaN 44498 35 0 4228.9 0.261 -1 FTRCVAVM 8 30 500.24163500475 998.4687170763 2 500.24420166015625 MULTI HCD FTMS 0 0 0 5690 6472.98486328125 0.14452761580177922 16 -0.3988494873046875 6 Carbamidomethyl (C),Oxidation (M) _FTRC(Carbamidomethyl (C))VAVM(Oxidation (M))_ ENSG00000186628|ENST00000334574|FSD2;nc|ENSG00000186628|A1L4K1-2|FSD2 2.8892196856762586 0.5377058178582064 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}[RD]Q{M(Oxidation (M))|F} 8 -1 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}[RD]Q + + 15.485 -5.1502 -0.61796 1.5508 1.5508 59.713 0 0 0 0 2.2969624387961574 0 0 0 0 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}[RD]Q{M(Oxidation (M))|F} 1.5508 - 24 + NaN NaN 93892.9 NaN 3559 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5697 35.1 NaN 32435 35 0 8827 0.261 -1 IDMLPHCP 8 24 491.72730113921136 981.4400493452227 2 491.7275695800781 MULTI HCD FTMS 0 0 0 5690 8643.416015625 0.44885014219816866 3 -0.08036422729492188 7 Carbamidomethyl (C) _IDMLPHC(Carbamidomethyl (C))P_ ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-2|GSAP;nc|ENSG00000186088|A4D1B5-3|GSAP 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95296.9 NaN 3560 2135 5690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5699 35.105 NaN 2107600 35 0 226280 0.327 + 30686 VPENHSVAL 9 94 483.2561437809302 964.4977346286604 2 483.2562561035156 MULTI HCD FTMS 0 0 0 5698 1564642.875 0.8400265917020119 2 -0.0538177490234375 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 128.93241758739586 0.0006697181619526092 2 [VP]ENHSVA{I|L} 9 0 + 91.866 0 0 9.5247 9.5247 91.763 0 0 0 7.825834421237516 11.058487086219287 7.825834421237516 6.315848193474608 0 2.2971062485323515 1.3010299956639813 1.1549471895720984 0.5283773187068795 + + [VP]ENHSVA{I|L};[VP]ENHSAV{I|L};[EP]VNHSVA{I|L};VPENHSVA{I|L};[VP]ENHSA{I|L}V;[EP]VNHSAV{I|L};[VP]EGGHSVA{I|L};VPEGGHSVA{I|L};[EP]VNHSA{I|L}V;[EP][HN]VSVA{I|L} 9.5247;8.8699;8.7133;8.3782;8.218;8.0585;8.0222;7.4235;7.4066;7.2813 +;-;-;+;-;-;-;-;-;- + 2707 NaN NaN 411268.2 NaN 3561 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5700 35.11 NaN 748470 35 0 46521 0.261 + 21846 QAVKEYNAL 9 91 518.2771468595189 1034.5397407858377 2 518.2771606445312 MULTI HCD FTMS 0 0 0 5698 418465.09375 0.9878936780744263 -1 0.026546478271484375 2 Unmodified _QAVKEYNAL_ ENSG00000087884|ENST00000393427|AAMDC 118.0683919894846 0.0016252157255221692 2 [QA]VKEYNA{I|L} 9 0 + 40.441 0 0 3.9091 3.9091 84.265 0 0 0 3.3792310274443977 5.886701187304183 3.3792310274443977 8.190177439240884 0 1.5743923658886185 0 0.28872548999643577 0.9802046884880937 + + [QA]VKEYNA{I|L};[YN]V[QT]{I|L}NA{I|L};[QA]VKE{[QV]|[N{I|L}]|[RA]|[KV]}S{M(Oxidation (M))|F};[QA]VKEYGGA{I|L};{[QG]|[NA]}Y{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}QA{I|L};[YN]V[QT]{I|L}GGA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AA[QT]{I|L}NA{I|L};[YN]V[QT]VQA{I|L};{[QG]|[NA]}Y{[QD]|[EN]|[WG]|[KD]|[RS]}K[PS]{I|L};{[QG]|[NA]}Y{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[AG]A{I|L} 3.9091;3.1174;3.0709;2.3859;2.3222;2.2273;2.1779;1.9381;1.6763;1.4321 +;-;-;-;-;-;-;-;-;- + 1523 + NaN NaN 211321.6 NaN 3562 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5701 35.113 NaN 319690 35 0 28546 0.261 + 1550 AYVHMVTHF 9 68 560.7656657896405 1119.5167786460809 2 560.7655639648438 MULTI HCD FTMS 0 0 0 5698 115962.5546875 0.08943537427197018 14 -0.3425025939941406 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 92.8221339359638 0.0044520161739443126 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 92.573 0 0 8.269 8.269 94.505 0 0 0 65.89062518744797 10.642492736872597 10.642492736872597 14.573259432077563 0 2.3979400086720375 2 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[Y{I|L}]GH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}G[KC]TH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}NAAV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}N[Q{I|L}]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F} 8.269;6.9673;6.9292;4.6971;4.2254;3.6887;3.0895;2.9181;2.493;2.2851 +;+;-;-;-;-;-;-;-;- + 646 + NaN NaN 133737.2 NaN 3563 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5702 35.116 NaN 61344 35 0 14065 0.261 + 14759 LHVRLSVEQ 9 24 540.8118149624577 1079.6090769917153 2 540.8119506835938 MULTI HCD FTMS 0 0 0 5698 15796.8779296875 0.7046256820506137 1 -0.03388214111328125 4 Unmodified _LHVRLSVEQ_ REV__ENSG00000168301|ENST00000404589|KCTD6 6.723162845929126 0.3000504726104499 2 [H{I|L}]V 3 -1 32.447 0 0 3.0055 0 0 0 727.3729342096311 727.3729342096311 32.447274948966935 0 0 0 0 0.5 1.6989700043360187 0 0 [H{I|L}]V 3.0055 + + 2 + NaN NaN 98561.3 NaN 3564 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5703 35.12 NaN 35495 35 0 6456.6 0.261 -1 HVTQEDFEM 9 20 576.2374500618795 1150.4603471905589 2 576.2376098632812 MULTI HCD FTMS 0 0 0 5698 25944.4609375 0.22610641907303267 37 -0.9703254699707031 5 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 24.990960013464015 0.14443998892849796 2 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 -1 49.68 0 0 4.3183 0 0 594.2757435529312 0 594.2757435529312 0 49.680475292681265 0 0 0 1.3494850021680094 0 0.4247425010840047 0 D{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.3183 + + 15 NaN NaN 95904.9 NaN 3565 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5704 35.123 NaN 53313 35 0 4436.4 0.262 + 22608 QVADVVVSR 9 37 486.77751861976304 NaN 0 486.77740478515625 PEAK HCD FTMS 0 0 0 5698 6912.888671875 0.4290231828828502 -1 0.026546478271484375 6 Unmodified _QVADVVVSR_ ENSG00000169710|ENST00000306749|FASN 7.101721422024254 0.2608328913336659 2 WVVV 4 6 18.928 0 0 1.9482 0 0 227.12704544089485 258.12030969791255 485.2473551388074 0 0 0 0 0 0 0 0 0 WVVV 1.9482 - 14 + NaN NaN 86382 NaN 3566 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5705 35.13 NaN 52640 35 0 5647.5 0.261 + -1 KLDPLLPGM 9 40 500.2816612488314 998.5487695644629 2 500.7820739746094 MULTI HCD FTMS 0 0 0 5698 9879.12109375 0.15974282785144378 14 -0.3425025939941406 7 Oxidation (M) _KLDPLLPGM(Oxidation (M))_ REV__ENST00000371098.6_1_20:57475019-57475169:+|nuORF 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7014 0 0 833.5036778670004 0 833.5036778670004 0 12.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7014 + + 40 + NaN NaN 90909.3 NaN 3567 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5706 35.134 NaN 23905 35 0 6829.2 0.261 + -1 WWPCMWCPE 9 15 627.2329486986955 1252.451344464191 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5698 14638.220703125 0.13310327335101185 31 -0.7895355224609375 8 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 P[EP] 3 -1 10.458 0 0 0.83497 0 0 911.2990589826187 0 911.2990589826187 0 10.45757490560675 0 0 0 0 0 0 0 P[EP] 0.83497 - 1 NaN NaN 97049.5 NaN 3568 2136 5698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5708 35.139 NaN 326160 35 0 110480 0.327 + 27514 TAADDSSVKL 10 57 503.75626520159346 1005.497977469987 2 503.7562561035156 MULTI HCD FTMS 0 0 0 5707 40778.54296875 0.041058167049303845 13 -0.3086204528808594 1 Unmodified _TAADDSSVKL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 30.7034409873982 0.22608124881558994 2 [TA]ADD 5 5 41.44 0 0 4.1214 0 0 0 529.2987764947874 529.2987764947874 18.481362441963327 0 0 0 0 0.8252574989159953 1.6989700043360187 0 0 + [TA]ADD 4.1214 + + 126 + NaN NaN 137525.1 NaN 3569 2137 5707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5709 35.144 NaN 357940 35 0 49230 0.262 -1 RYVRKFVLM 9 51 409.9057362128441 1226.6953792387324 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5707 95429.8125 0.47845989308834547 -11 0.2760810852050781 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 8.155526934196011 0.2891920862272901 2 R{I|L}{M(Oxidation (M))|F} 3 -1 33.06 0 0 2.695 0 0 792.4654120529887 0 792.4654120529887 0 18.634993639681312 0 0 0 0.9247425010840047 0 0 0 R{I|L}{M(Oxidation (M))|F} 2.695 - 40 + NaN NaN 136513.8 NaN 3570 2137 5707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5710 35.147 NaN 89562 35 0 6641.6 0.261 -1 AMNMLHELQ 9 43 551.7548964084839 1101.4952398837677 2 551.7548217773438 MULTI HCD FTMS 0 0 0 5707 37999.26171875 0.43567076193793774 -8 0.1797637939453125 3 Oxidation (M) _AMNM(Oxidation (M))LHELQ_ nc|ENSG00000226807|Q6ZUA9|MROH5 6.2057823575117 0.30397260197431997 2 E{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[PS] 6 -1 18.913 0 0 1.717 0 0 396.2115650861344 0 396.2115650861344 0 9.449237304209891 0 0 0 0.9247425010840047 0 0 0 E{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[PS] 1.717 - 22 NaN NaN 100054.4 NaN 3571 2137 5707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5711 35.15 NaN 48448 35 0 4581.3 0.261 -1 SPDSGVYEM 9 32 500.7001596945378 999.3857664558756 2 500.6995849609375 MULTI HCD FTMS 0 0 0 5707 8882.462890625 0.02265645064302215 31 -0.7921295166015625 4 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F} 1 -1 18.852 0 0 1.8863 0 0 834.3400644068506 0 834.3400644068506 0 18.85151878060192 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.8863 + + 5 + NaN NaN 96020.5 NaN 3572 2137 5707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5712 35.154 NaN 20862 35 0 4603.2 0.261 + -1 TCCYRCGR 8 18 566.7254499451043 1131.4363469570085 2 566.7247924804688 MULTI HCD FTMS 0 0 0 5707 10006.8798828125 0.47238150039175175 -4 0.10024261474609375 5 3 Carbamidomethyl (C) _TC(Carbamidomethyl (C))C(Carbamidomethyl (C))YRC(Carbamidomethyl (C))GR_ REV__nc|ENSG00000293075|Q5TZK3|FAM74A4 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95098.6 NaN 3573 2137 5707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5714 35.159 NaN 382540 35 0 70377 0.326 -1 0 46 522.2665321372752 1042.5185113413504 2 522.2755126953125 MULTI HCD FTMS 0 0 0 5713 11425.4453125 0.04999001195830427 18 -0.4639015197753906 1 NaN NaN 2 {I|L}PGAN 5 -1 51.938 0 0 4.982 0 0 0 587.2953585260374 587.2953585260374 30.969100130080562 0 0 0 0 0 1.6989700043360187 0 0 {I|L}PGAN 4.982 - 77 + NaN NaN 159963.7 NaN 3574 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5715 35.163 NaN 144760 35 0 50290 0.261 + 25327 SDEAQRVF 8 35 476.2303002884569 950.4460476437138 2 476.23028564453125 MULTI HCD FTMS 0 0 0 5713 72417.2265625 0.15389038277103348 9 -0.21246337890625 2 Unmodified _SDEAQRVF_ ENSG00000114013|ENST00000330540|CD86;nc|ENSG00000114013|P42081-2|CD86;nc|ENSG00000114013|P42081-3|CD86;nc|ENSG00000114013|P42081-4|CD86;nc|ENSG00000114013|P42081-5|CD86;nc|ENSG00000114013|P42081-6|CD86 12.531546534597751 0.5015908124873912 2 VYD[SG]V{M(Oxidation (M))|F} 7 6 35.534 0 0 3.7386 0 0 165.078905174025 0 165.078905174025 0 19.33561654977865 0 0 0 0 0 0.3807196863200844 0 VYD[SG]V{M(Oxidation (M))|F} 3.7386 - 29 NaN NaN 108623.1 NaN 3575 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5716 35.167 NaN 110420 35 0 13241 0.261 + 6860 FPTKQESQL 9 47 539.2822686962164 1076.5499844592327 2 539.2822265625 MULTI HCD FTMS 0 0 0 5713 43143.43359375 0.5880579091781217 -5 0.12017822265625 3 Unmodified _FPTKQESQL_ ENSG00000105287|ENST00000291281|PRKD2;ENSG00000115825|ENST00000234179|PRKD3;ENSG00000184304|ENST00000331968|PRKD1;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 18.373094154950223 0.20161688160436167 2 TPE 3 7 35.005 0 0 3.2516 0 0 731.3765736310562 0 731.3765736310562 0 18.807196863200843 0 0 0 0.5 0 0.3807196863200844 0 TPE 3.2516 - 16 NaN NaN 108181.5 NaN 3576 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5717 35.17 NaN 84239 35 0 28457 0.261 + 14444 LERYLMQEL 9 27 597.8131771484126 1193.611801363625 2 597.8129272460938 MULTI HCD FTMS 0 0 0 5713 28758.197265625 0.03127500862706299 31 -0.7953643798828125 4 Unmodified _LERYLMQEL_ REV__ENSG00000183837|ENST00000593810|PNMA3;REV__nc|ENSG00000183837|Q9UL41-2|PNMA3 3.2813086475875832 0.32614229037259 2 K 1 -1 7.7642 0 0 0.65048 0 0 504.22490452664516 558.2651461236936 1062.4900506503388 0 0 0 0 0 0.5 0 0 0 K 0.65048 - 6 + NaN NaN 100646 NaN 3577 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5718 35.174 NaN 77104 35 0 12672 0.261 + 28081 TGYNYNDAL 9 25 515.729262886834 NaN 0 515.7293701171875 PEAK HCD FTMS 0 0 0 5713 20274.931640625 0.5565205191364081 1 -0.0331878662109375 5 Unmodified _TGYNYNDAL_ REV__ENSG00000081277|ENST00000367324|PKP1;REV__nc|ENSG00000081277|Q13835|PKP1;REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant 5.731851221503515 0.26747109115447115 2 A 1 -1 6.9897 0 0 0.67898 0 0 131.09620699220517 824.2888887994749 955.38509579168 0 0 0 0 0 0 0 0 0 A 0.67898 + + 4 + NaN NaN 96248.1 NaN 3578 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5719 35.177 NaN 106820 35 0 16406 0.261 + 2512 DSIVIQQGR 9 33 508.2799837780122 1014.5454146228244 2 508.2801818847656 MULTI HCD FTMS 0 0 0 5713 18522.92578125 0.5531757504942789 1 -0.0331878662109375 6 Unmodified _DSIVIQQGR_ ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1 34.40172386719151 0.0910440009062557 2 V{I|L}Q 3 6 25.362 0 0 2.4998 0 0 315.14502711389986 356.16843591861567 671.3134630325155 0 0 0 0 0 1.5669015600442577 0 0 0 + V{I|L}Q 2.4998 + + 29 + NaN NaN 101591.7 NaN 3579 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5720 35.18 NaN 126180 35 0 15356 0.261 -1 APTDIEEGM 9 30 489.70772801828804 977.4009031033761 2 489.7077331542969 MULTI HCD FTMS 0 0 0 5713 32433.376953125 0.6006771861236349 -2 0.0538177490234375 7 Oxidation (M) _APTDIEEGM(Oxidation (M))_ ENSG00000161057|ENST00000292644|PSMC2;ENST00000460021.1_1_7:102994369-103002536:+|nuORF 25.399314129420986 0.14091189997036632 2 {I|L}EEG{M(Oxidation (M))|F} 5 -1 36.855 0 0 3.7707 0 0 384.1642323224625 0 384.1642323224625 0 28.48283590643911 0 0 0 0.8807196863200843 0 0 0 {I|L}EEG{M(Oxidation (M))|F} 3.7707 + + 24 NaN NaN 99303.4 NaN 3580 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5721 35.184 NaN 117830 35 0 23139 0.261 -1 HSLPQEPVM 9 36 527.2553496620409 1052.4961463908817 2 527.2547607421875 MULTI HCD FTMS 0 0 0 5713 19491.0078125 0.16456629111619372 -9 0.19969940185546875 8 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 24.990960013464015 0.14443998892849796 2 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 39.371 0 0 3.7407 3.7407 89.534 0 0 0 5.6424927368726046 23.172874778693362 5.6424927368726046 39.3707623615773 0 1.9247425010840047 0 0 0 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 3.7407 + + 32 NaN NaN 109383.5 NaN 3581 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5722 35.187 NaN 94568 35 0 8835.3 0.261 + 29559 VAAGSYQRF 9 45 499.75631661683866 997.4980803004773 2 499.75628662109375 MULTI HCD FTMS 0 0 0 5713 22340.435546875 0.5824963120068671 -2 0.0538177490234375 9 Unmodified _VAAGSYQRF_ ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1 27.628801355627647 0.12213550946336599 2 {[VA]|[{I|L}G]}AGSYQ[R{M(Oxidation (M))|F}] 9 0 + 34.292 0 0 3.4378 3.4378 83.195 0 0 0 23.05516236474447 5.6424927368726046 5.6424927368726046 6.706962271689754 0 0.9247425010840047 0 0.3494850021680094 0 + + {[VA]|[{I|L}G]}AGSYQ[R{M(Oxidation (M))|F}];{[VA]|[{I|L}G]}QSYQ[R{M(Oxidation (M))|F}];{[VA]|[{I|L}G]}AGSY[AG][R{M(Oxidation (M))|F}];{[VA]|[{I|L}G]}QSY[AG][R{M(Oxidation (M))|F}] 3.4378;2.7655;2.5147;1.8369 +;-;-;- + 62 + NaN NaN 120127.1 NaN 3582 2138 5713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5724 35.192 NaN 61859 35 0 6800.8 0.326 -1 ATSDMFYF 8 31 499.20144124228773 996.3883295513755 2 499.2018127441406 MULTI HCD FTMS 0 0 0 5723 35586.99609375 0.9347606735001693 -2 0.05312347412109375 1 Oxidation (M) _ATSDM(Oxidation (M))FYF_ ENSG00000150893|ENST00000280481|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2 8.593279151180031 0.5292430274356741 2 SA[EP]S[PG] 7 -1 19.71 0 0 1.9781 0 0 353.10740859199376 0 353.10740859199376 0 11.037494375383615 0 0 0 0.5 0 0.5 0 SA[EP]S[PG] 1.9781 - 20 NaN NaN 90808.4 NaN 3583 2139 5723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5725 35.197 NaN 39786 35 0 4689 0.261 + 19129 NFQLCRMI 8 24 512.7564110937228 1023.4982692542457 2 512.7568969726562 MULTI HCD FTMS 0 0 0 5723 19723.794921875 0.6967365867494257 -4 0.11355209350585938 2 Unmodified _NFQLCRMI_ REV__ENSG00000163380|ENST00000420581|LMOD3;REV__nc|ENSG00000163380|Q0VAK6-2|LMOD3 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88862.5 NaN 3584 2139 5723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5726 35.2 NaN 58268 35 0 5520.7 0.261 + 12039 KIFQLIYFFH 10 36 452.5882753549415 1354.7429966650245 3 452.5881042480469 MULTI HCD FTMS 0 0 0 5723 9938.986328125 0.32484421714707756 -4 0.11355209350585938 3 Unmodified _KIFQLIYFFH_ REV__ENSG00000197603|ENST00000651892|CPLANE1;REV__nc|ENSG00000197603|Q9H799-5|CPLANE1;REV__nc|ENSG00000197603|Q9H799|CPLANE1 0.6268255596534771 0.47198581731947004 2 K{I|L} 2 -1 20.969 0 0 1.5478 0 0 0 1110.539286546258 1110.539286546258 20.969100130080562 0 0 0 0 0 0 0 0 K{I|L} 1.5478 + + 1 + NaN NaN 102976.3 NaN 3585 2139 5723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5727 35.203 NaN 103600 35 0 17601 0.261 + 23926 RTQMEMLT 8 29 505.24339659050617 1008.4722402478124 2 505.2431335449219 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RTQMEMLT_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99026.8 NaN 3586 2139 5723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5728 35.207 NaN 41180 35 0 7550.6 0.261 + -1 CYYRKLFCV 9 28 436.87923803806666 NaN 0 436.8789978027344 PEAK HCD FTMS 0 0 0 5723 12795.216796875 0.515795245266363 69 -1.7034568786621094 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YYRKLFC(Carbamidomethyl (C))V_ REV__ENSG00000165186|ENST00000379361|PTCHD1;REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97003.8 NaN 3587 2139 5723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5730 35.212 NaN 268030 35 0 40305 0.327 -1 MEEEAGQTSI 10 45 555.7343544632182 1109.4541559932363 2 555.734619140625 MULTI HCD FTMS 0 0 0 5729 103017.2265625 0.799341490094618 -2 0.053096771240234375 1 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 14.405379775768559 0.37636895476610294 2 QTS{I|L} 4 -1 41.542 0 0 3.7444 0 0 662.2227650373062 0 662.2227650373062 0 26.84955642535897 0 0 0 1 0 0.5 0 QTS{I|L} 3.7444 + + 30 NaN NaN 127056.4 NaN 3588 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5731 35.217 NaN 120250 35 0 11383 0.261 + 1479 AYSVEHNQL 9 36 530.7564712142082 1059.4983894952163 2 530.7564086914062 MULTI HCD FTMS 0 0 0 5729 71012.7265625 0.1286945187885809 8 -0.17592620849609375 2 Unmodified _AYSVEHNQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 29.081581746732265 0.1154664336125038 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV 4 5 41.995 0 0 3.9636 0 0 0 636.2757052057249 636.2757052057249 35.00508444608478 0 0 0 0 0.5 1.6989700043360187 0.3807196863200844 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV 3.9636 + + 16 + NaN NaN 108857.6 NaN 3589 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5732 35.22 NaN 112980 35 0 12770 0.261 -1 SAEPSPTVM 9 38 467.7129990212783 933.4114451093566 2 467.71270751953125 MULTI HCD FTMS 0 0 0 5729 85808.2578125 0.7522814762212782 7 -0.15936660766601562 3 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.3558 0 0 768.3654684021285 0 768.3654684021285 0 6.532125137753438 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.3558 + + 8 + NaN NaN 110212.2 NaN 3590 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5733 35.223 NaN 21773 35 0 4101.4 0.261 -1 SEMCHSSHDD 10 20 582.1900864217828 1162.3656199103655 2 582.1897583007812 MULTI HCD FTMS 0 0 0 5729 13414.4658203125 0.9418205386673036 -2 0.053096771240234375 4 Oxidation (M) _SEM(Oxidation (M))CHSSHDD_ ENSG00000084710|ENST00000403714|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90985.1 NaN 3591 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5734 35.227 NaN 37001 35 0 4341.5 0.262 -1 VAMRMTCS 8 21 478.70401747907295 955.3934820249459 2 478.7041931152344 MULTI HCD FTMS 0 0 0 5729 15674.4365234375 0.8381223508790179 7 -0.15936660766601562 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VAM(Oxidation (M))RMTCS_ ENST00000263341.6_1_2:113593144-113593760:-|nuORF 2.577480529830294 0.5381683276125971 2 N 1 -1 8.0989 0 0 0.84771 0 0 668.2818314895928 170.04876123599846 838.3305927255913 0 0 0 0 0 0.5 0 0 0 N 0.84771 - 3 + NaN NaN 90214.1 NaN 3592 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5735 35.23 NaN 30146 35 0 6369.9 0.261 + 3543 EINQNVEIQR 10 17 621.8253515600156 1241.6361501868312 2 621.8255004882812 MULTI HCD FTMS 0 0 0 5729 18427.71484375 0.7960393897750467 -3 0.07303237915039062 6 Unmodified _EINQNVEIQR_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 7.101721422024254 0.4377131641736035 2 NVE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 6 4 23.645 0 0 1.9044 0 0 484.2286927667124 0 484.2286927667124 0 14.181212380090216 0 0 0 0 0 0 0 + NVE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]} 1.9044 + + 25 + NaN NaN 85477.9 NaN 3593 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5736 35.233 NaN 22519 35 0 4608.2 0.261 + 4164 ETQATVIYNTK 11 23 634.3302695453574 1266.6459861575147 2 634.3304443359375 MULTI HCD FTMS 0 0 0 5729 6904.27392578125 0.4343622140725961 5 -0.10288238525390625 7 Unmodified _ETQATVIYNTK_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 2.0860074813731053 0.4097721463192591 2 T 1 10 6.9897 0 0 0.55183 0 0 429.1847567647397 733.3919161432249 1162.5766729079646 0 0 0 0 0 0 0 0 0 + T 0.55183 + + 1 + NaN NaN 112350.7 NaN 3594 2140 5729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5738 35.239 NaN 67837 35 0 8280.5 0.327 + 14711 LHEYFPEM 8 32 541.2345047385312 1080.4544565438623 2 541.2342529296875 MULTI HCD FTMS 0 0 0 5737 16760.279296875 0.5158078447755093 -1 0.026546478271484375 1 Oxidation (M) _LHEYFPEM(Oxidation (M))_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 42.96799951952854 0.1928021754174411 2 E{M(Oxidation (M))|F} 2 6 32.078 0 0 2.969 0 0 786.3665792018686 0 786.3665792018686 0 25.088643834802156 0 0 0 0.7614393726401688 0 0.5 0 + E{M(Oxidation (M))|F} 2.969 + + 9 + NaN NaN 123134.2 NaN 3595 2141 5737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5739 35.243 NaN 53363 35 0 4963.4 0.261 + 27518 TAAEDNVRL 9 34 494.7559375259661 987.4973221187322 2 494.75579833984375 MULTI HCD FTMS 0 0 0 5737 5976.19970703125 0.1984778323451975 5 -0.10631561279296875 2 Unmodified _TAAEDNVRL_ ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1;nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1 16.149105407346934 0.22083165093524068 2 [TA]AED 5 4 30.974 0 0 3.1366 0 0 0 497.28537927799067 497.28537927799067 10.00508444608478 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 + [TA]AED 3.1366 + + 8 + NaN NaN 97162.1 NaN 3596 2141 5737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5740 35.247 NaN 20790 35 0 4063.7 0.261 + 22218 QLTAMCWMR 9 16 570.2613940008348 1138.5082350684695 2 570.2619018554688 MULTI HCD FTMS 0 0 0 5737 8822.0439453125 0.6678641553535123 -9 0.22632217407226562 3 Unmodified _QLTAMCWMR_ ENSG00000103043|ENST00000261776|VAC14 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88016.4 NaN 3597 2141 5737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5742 35.252 NaN 1034900 35 0 96951 0.327 + 30687 VPENHSVAL 9 74 483.2561437809302 964.4977346286604 2 483.25616455078125 MULTI HCD FTMS 0 0 0 5741 713249.375 0.38292983727346736 8 -0.19578933715820312 1 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 114.20165948288297 0.0022564706844261533 2 [VP]ENHSVA{I|L} 9 0 + 80.275 0 0 8.323 8.323 93.396 0 0 0 9.907745183588844 9.907745183588844 9.907745183588844 9.713403050078782 0 2.0911290632962722 1.2218487496163564 1.1549471895720984 0.5752574989159953 + + [VP]ENHSVA{I|L};[VP]ENHSAV{I|L};VPENHSVA{I|L};[EP]VNHSVA{I|L};[VP]ENHSA{I|L}V;VPEGGHSVA{I|L};[EP]VNHSAV{I|L};[EP]VNHSA{I|L}V;[VP]ENH{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};{I|L}[DP]NHSVA{I|L} 8.323;7.3159;7.2957;6.4273;6.3822;6.341;5.4202;4.4866;3.9914;3.7352 +;-;+;-;-;-;-;-;-;- + 697 NaN NaN 237165.5 NaN 3598 2142 5741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5743 35.256 NaN 567040 35 0 83740 0.261 + 13905 KYQEVTNNL 9 73 554.7850759152151 1107.55559889723 2 554.7852783203125 MULTI HCD FTMS 0 0 0 5741 237184.296875 0.13207642501076117 -5 0.11283111572265625 2 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 114.18643581695662 0.002258955990713129 2 [YK]QEVTNN{I|L} 9 0 [YK] + + 69.671 2.2185 0.76195 6.2905 6.2905 64.395 0 0 0 0 39.164186298229566 0 0 0 2.524227503252014 0 0.3054621874040891 1.9604093769761874 + + [YK]QEVTNN{I|L} 6.2905 + + 878 + NaN NaN 165785.6 NaN 3599 2142 5741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5744 35.26 NaN 201640 35 0 22912 0.261 + 1551 AYVHMVTHF 9 59 560.7656657896405 1119.5167786460809 2 560.765869140625 MULTI HCD FTMS 0 0 0 5741 71302.5703125 0.05499164863724154 20 -0.5334892272949219 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 74.42276476219924 0.007657080072768255 2 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 2 + 70.826 0 0 6.3264 6.3264 86.737 0 0 0 10.642492736872597 5.574419167676439 5.574419167676439 5.574419167676439 0 2.024227503252014 0 0.5 0 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[Y{I|L}]GH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};[Y{I|L}]G{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]H{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CT]|[{M(Oxidation (M))|F}G]}[HS]H{M(Oxidation (M))|F} 6.3264;5.8285;3.8255;3.0462;0.5453;0.2764 -;+;-;-;-;- + 274 + NaN NaN 119512.7 NaN 3600 2142 5741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5745 35.263 NaN 33078 35 0 7186.5 0.262 + -1 VHIQAETM 8 16 472.7290868203878 943.4436207075756 2 472.7289733886719 MULTI HCD FTMS 0 0 0 5741 13425.0537109375 0.3830550266018659 11 -0.2784004211425781 4 Oxidation (M) _VHIQAETM(Oxidation (M))_ REV__ENSG00000151466|ENST00000281142|SCLT1;REV__nc|ENSG00000151466|Q96NL6-2|SCLT1;REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant 3.944395688203298 0.5361403129012058 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.7526 0 0 677.3488325966455 0 677.3488325966455 0 25.969100130080562 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.7526 + + 3 NaN NaN 82658.5 NaN 3601 2142 5741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5746 35.267 NaN 82950 35 0 8909.7 0.261 -1 FPDAREQEIRM 11 35 469.89415738596426 1406.6606427580928 3 470.2286376953125 MULTI HCD FTMS 0 0 0 5741 18388.537109375 0.8740401038346829 -3 0.0597076416015625 5 Oxidation (M) _FPDAREQEIRM(Oxidation (M))_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 2.2527281973983926 0.4090409658946738 2 PE 2 -1 20.969 0 0 1.4907 0 0 1162.5397757831163 0 1162.5397757831163 0 20.969100130080562 0 0 0 0 0 0 0 PE 1.4907 - 1 NaN NaN 99848.6 NaN 3602 2142 5741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5748 35.272 NaN 628530 35 0 91972 0.327 -1 RYVRKFVLM 9 73 409.9057362128441 1226.6953792387324 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5747 166587.09375 0.8352237207374078 -5 0.11286163330078125 1 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 11.494710602746466 0.2610445893512368 2 R{I|L}{M(Oxidation (M))|F} 3 -1 30.93 0 0 2.5214 0 0 792.4638251389262 0 792.4638251389262 0 18.010299956639813 0 0 0 0.9247425010840047 0 0 0 R{I|L}{M(Oxidation (M))|F} 2.5214 - 58 + NaN NaN 178930.9 NaN 3603 2143 5747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5749 35.276 NaN 256230 35 0 25217 0.261 + 9352 HPSERSFEL 9 54 551.2700392028908 1100.5255254725814 2 551.2698364257812 MULTI HCD FTMS 0 0 0 5747 98963.921875 0.5841683933248081 -2 0.0332183837890625 2 Unmodified _HPSERSFEL_ ENSG00000156030|ENST00000423556|MIDEAS;nc|ENSG00000156030|Q6PJG2|MIDEAS 20.41453444215458 0.18397929046831515 2 HPNQVE 6 6 54.175 0 0 4.9227 0 0 0 393.18784509830317 393.18784509830317 31.47222222092239 0 0 0 0 0.5 0 1.0994850021680094 0.3054621874040891 HPNQVE 4.9227 - 107 + NaN NaN 118421.9 NaN 3604 2143 5747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5750 35.28 NaN 24145 35 0 5081.3 0.261 + -1 WWPCMWCPE 9 19 627.2329486986955 1252.451344464191 2 627.2333374023438 MULTI HCD FTMS 0 0 0 5747 12487.6845703125 0.11354875203710227 38 -1.006622314453125 3 Oxidation (M) _WWPCM(Oxidation (M))WCPE_ REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86684.5 NaN 3605 2143 5747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5751 35.283 NaN 44864 35 0 5684.4 0.263 -1 VDMLGWHL 8 24 493.743164564692 NaN 0 493.7430419921875 PEAK HCD FTMS 0 0 0 5747 15785.865234375 0.7379903221874285 -1 0.01996612548828125 4 Oxidation (M) _VDM(Oxidation (M))LGWHL_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3 5.230669730166228 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85541 NaN 3606 2143 5747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5752 35.286 NaN 27717 35 0 4499 0.261 + 29836 VESNGRIPT 9 23 486.75886577181797 971.503178610436 2 486.7586975097656 MULTI HCD FTMS 0 0 0 5747 2774.70361328125 0.20029967089707687 3 -0.07309722900390625 5 Unmodified _VESNGRIPT_ REV__ENSG00000108387|ENST00000672673|SEPTIN4;REV__nc|ENSG00000108387|O43236-8|SEPTIN4 3.5964929083625545 0.32375295897743744 2 E 1 -1 1.5938 0 0 0.16405 0 0 375.2691831043797 464.18271814517817 839.4519012495579 0 0 0 0 0 0 0 0 0 E 0.16405 + + 2 + NaN NaN 86305.9 NaN 3607 2143 5747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5753 35.29 NaN 31337 35 0 5777.9 0.261 + -1 WMFRKACI 8 19 564.2756958007812 NaN 0 564.2756958007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _WM(Oxidation (M))FRKAC(Carbamidomethyl (C))I_ REV__ENSG00000169155|ENST00000373464|ZBTB43 0.7936320650641473 0.38822285293237185 2 E 1 -1 3.0989 0 0 0.27509 0 0 847.54265868965 146.93049036197502 994.473149051625 0 0 0 0 0 0 0 0 0 E 0.27509 - 1 + NaN NaN 82376.5 NaN 3608 2143 5747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5755 35.295 NaN 413550 35 0 48906 0.327 + 2601 DTVAQITQR 9 49 516.2777019266745 1030.5408509201488 2 516.2777099609375 MULTI HCD FTMS 0 0 0 5754 186636.046875 0.44003026834142356 -3 0.05645751953125 1 Unmodified _DTVAQITQR_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 96.93554129104106 0.004344229100022454 2 {[ES]|[DT]|[{I|L}C]}VA[Q{I|L}]TQR 9 0 + 72.263 0 0 7.0122 7.0122 90.28 0 0 0 1.483259264971153 1.483259264971153 1.483259264971153 9.208187539523749 0 2.9247425010840047 0 2.447621246364342 0 + + {[ES]|[DT]|[{I|L}C]}VA[Q{I|L}]TQR;{[ES]|[DT]|[{I|L}C]}VA[Q{I|L}]T[AG]R;{[ES]|[DT]|[{I|L}C]}VA[Q{I|L}]A{[SA]|[TG]}R;{[MG]|[TS]}[TP][Q{I|L}]TQR 7.0122;6.1186;5.0449;3.9588 +;-;-;- + 289 NaN NaN 141313.8 NaN 3609 2144 5754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5756 35.3 NaN 82971 35 0 20371 0.261 + 26210 SPSVGDRSF 9 29 476.2303002884569 950.4460476437138 2 476.2298583984375 MULTI HCD FTMS 0 0 0 5754 36738.5625 0.07807136111050975 15 -0.4007530212402344 2 Unmodified _SPSVGDRSF_ REV__ENST00000376955.8_1_17:43215336-43220144:+|nuORF 6.723162845929126 0.3000504726104499 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.7323 0 0 686.2993641584 0 686.2993641584 0 17.296962438796157 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.7323 - 13 NaN NaN 100947.1 NaN 3610 2144 5754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5757 35.303 NaN 207730 35 0 19891 0.261 + 27892 TEEDLDLVTL 10 39 574.2907273567691 1146.5669017803382 2 574.2904052734375 MULTI HCD FTMS 0 0 0 5754 72319.734375 0.017621840630187794 -8 0.18991851806640625 3 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 25.399314129420986 0.2735354021946395 2 EVT{I|L} 4 6 47.423 0 0 4.1361 0 0 686.3124256818375 0 686.3124256818375 0 25.996075289514096 0 0 0 0.5 0 1.3494850021680094 0 EVT{I|L} 4.1361 - 27 NaN NaN 115600.7 NaN 3611 2144 5754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5758 35.306 NaN 27673 35 0 6963.5 0.261 + -1 YCLCSEFGP 9 15 566.7254499451043 1131.4363469570085 2 566.7256469726562 MULTI HCD FTMS 0 0 0 5754 20524.453125 0.9688706245550266 3 -0.07636260986328125 4 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))LC(Carbamidomethyl (C))SEFGP_ REV__ENST00000417355.1_1_2:220163779-220168768:+|nuORF 0.5247636613948944 0.34703895399870666 2 R 1 -1 3.0989 0 0 0.27389 0 0 474.6463211775147 497.65009485416255 972.2964160316773 0 0 0 0 0 0 0 0 0 R 0.27389 - 1 + NaN NaN 81708.6 NaN 3612 2144 5754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5759 35.31 NaN 34990 35 0 7792.6 0.261 -1 VAEQTPSCVC 10 27 547.2363999163587 NaN 0 547.2362060546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _VAEQTPSC(Carbamidomethyl (C))VC_ ENSG00000174808|ENST00000395743|BTC 2.735195868890462 0.33784334045437464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92365.5 NaN 3613 2144 5754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5761 35.315 NaN 282560 35 0 54236 0.327 + -1 LPEKKWPM 8 39 522.7825229976974 1043.5504930621946 2 522.2757568359375 MULTI HCD FTMS 0 0 0 5760 115566.8984375 0.7945132867514473 5 -0.1327056884765625 1 Oxidation (M) _LPEKKWPM(Oxidation (M))_ REV__ENST00000394795.6_1_5:138678171-138678324:+|nuORF;REV__ENST00000510080.1_1_5:138678261-138699499:+|nuORF 10.183394434864962 0.5188676124868831 2 [{I|L}P][MT][YV]AGP 9 -1 25.352 0 0 2.4294 0 0 0 111.07571166487529 111.07571166487529 3.925449767853312 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}P][MT][YV]AGP 2.4294 - 34 NaN NaN 125167.5 NaN 3614 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5762 35.319 NaN 228450 35 0 56064 0.261 -1 HSLPQEPVM 9 33 527.2553496620409 1052.4961463908817 2 527.2555541992188 MULTI HCD FTMS 0 0 0 5760 106347.53125 0.8979124607375153 -2 0.043117523193359375 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 38.175570920033316 0.07371992880350783 2 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 45.876 0 0 4.3588 4.3588 90.466 0 0 0 7.147642715192504 31.183174735333168 7.147642715192504 45.8759123398972 0 1.9247425010840047 0 0.3494850021680094 0 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 4.3588 + + 31 NaN NaN 127839.8 NaN 3615 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5763 35.323 NaN 78712 35 0 23771 0.261 -1 RYLEKPMEI 9 24 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 5760 43692.203125 0.10328485845181434 -16 0.3556785583496094 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 10.799506525563784 0.2670509983294061 2 K 1 -1 16.237 0 0 1.3603 0 0 561.2930782603465 501.2018221490844 1062.494900409431 0 0 0 0 0 0.9247425010840047 0 0 0 K 1.3603 + + 9 + NaN NaN 95430 NaN 3616 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5764 35.326 NaN 165480 35 0 48860 0.264 -1 DRIRCQRTI 9 35 406.5558946016593 1216.645854405178 3 406.5558166503906 MULTI HCD FTMS 0 0 0 5760 47612.01171875 0.5550259442500302 -4 0.07633590698242188 4 Carbamidomethyl (C) _DRIRC(Carbamidomethyl (C))QRTI_ ENST00000524719.1_2_8:144694837-144695083:-|nuORF 8.97624648632007 0.2828035605319045 2 T{I|L} 2 -1 35.217 0 0 2.8946 0 0 984.5027952354023 0 984.5027952354023 0 19.643331241078172 0 0 0 1 0 0.4247425010840047 0 T{I|L} 2.8946 + + 23 NaN NaN 102492.9 NaN 3617 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5765 35.33 NaN 82270 35 0 21441 0.261 + -1 WFCCRSMR 8 32 581.2407388773602 1160.4669248215203 2 581.2410278320312 MULTI HCD FTMS 0 0 0 5760 27817.21484375 0.4819710764847117 -2 0.043117523193359375 5 Carbamidomethyl (C),Oxidation (M) _WFC(Carbamidomethyl (C))CRSM(Oxidation (M))R_ REV__ENST00000428453.5_1_15:20588586-20667676:-|nuORF;REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF;REV__nc|ENSG00000290376|Q9BVR0|HERC2P3 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89511.1 NaN 3618 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5766 35.333 NaN 43406 35 0 6556 0.261 -1 IFAEVMVCR 9 25 570.7806363114386 1139.546719689677 2 570.780029296875 MULTI HCD FTMS 0 0 0 5760 20949.966796875 0.5814726529504157 -1 0.019878387451171875 6 Carbamidomethyl (C),Oxidation (M) _IFAEVM(Oxidation (M))VC(Carbamidomethyl (C))R_ ENSG00000105219|ENST00000430325|CCNP 1.844237919475145 0.33703635659052655 2 G 1 -1 0.9691 0 0 0.085043 0 0 548.7671309219021 530.7381075494749 1079.505238471377 0 0 0 0 0 0 0 0 0 G 0.085043 - 2 + NaN NaN 87938.9 NaN 3619 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5767 35.336 NaN 46683 35 0 3715.2 0.264 + 1693 CGCSPGHF 8 41 404.1493559694882 NaN 0 404.1494140625 PEAK HCD FTMS 0 0 0 5760 11799.62890625 0.35708489083140815 11 -0.30792236328125 7 Unmodified _CGCSPGHF_ ENSG00000157873|ENST00000355716|TNFRSF14;ENST00000463471.6_1_1:2490981-2492960:+|nuORF;ENST00000475523.5_1_1:2490981-2494709:+|nuORF;ENST00000496064.5_1_1:2488103-2492154:+|nuORF;nc|ENSG00000157873|Q92956-2|TNFRSF14 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93201.8 NaN 3620 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5768 35.34 NaN 70505 35 0 9775.9 0.261 + 35284 YVVMYMLM 8 37 525.247291806129 1048.480030679058 2 524.7914428710938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YVVMYMLM_ tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 17.086550045450526 0.4680768486079041 2 [YV]MV 4 5 35.93 0 0 3.4269 0 0 0 553.2162116695455 553.2162116695455 28.940162615404077 0 0 0 0 0.4247425010840047 2 0 0 [YV]MV 3.4269 - 17 NaN NaN 96485.2 NaN 3621 2145 5760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5770 35.345 NaN 290500 35 0 66920 0.327 + 4154 ETNYGIPQR 9 55 539.2698163543312 1076.5250797754622 2 539.2698974609375 MULTI HCD FTMS 0 0 0 5769 69323.4609375 0.865660017981653 -1 0.029979705810546875 1 Unmodified _ETNYGIPQR_ ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF 27.628801355627647 0.12213550946336599 2 PE 2 8 20.969 0 0 1.9479 0 0 832.4301014630875 0 832.4301014630875 0 -2.7081220072886225 -2.7081220072886225 0 0 0 0 0 0 PE 1.9479 - 143 NaN NaN 127767 NaN 3622 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5771 35.349 NaN 198200 35 0 19693 0.261 -1 MPSASMTRL 9 50 505.24339659050617 1008.4722402478124 2 505.24383544921875 MULTI HCD FTMS 0 0 0 5769 54487.3203125 0.7887080170538994 -1 0.029979705810546875 2 Oxidation (M) _MPSASM(Oxidation (M))TRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 23.789781309258295 0.1548179064208189 2 MPSA 4 -1 55.79 0 0 5.5321 0 0 0 619.2811437165052 619.2811437165052 34.820618910682484 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 MPSA 5.5321 + + 14 + NaN NaN 115342.4 NaN 3623 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5772 35.353 NaN 61783 35 0 4649.8 0.261 + 802 ATQVIISTR 9 38 494.7930252933946 987.5714976535892 2 494.7924499511719 MULTI HCD FTMS 0 0 0 5769 30780.7734375 0.6612804484289353 -3 0.07309722900390625 3 Unmodified _ATQVIISTR_ nc|ENSG00000293458|O60774|FMO6P 9.38312468134398 0.279288223203164 2 [TA]NT{I|L}{I|L}VTR 9 3 + 40.569 0 0 4.1079 4.1079 85.716 0 0 0 33.57894990110104 14.973024840566467 14.973024840566467 9.208187539523749 0 0.6989700043360187 0 0.4247425010840047 0 [TA]NT{I|L}{I|L}VTR;[TA]GGT{I|L}{I|L}VTR 4.1079;3.1755 -;- 68 + NaN NaN 91012 NaN 3624 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5773 35.356 NaN 67636 35 0 8327 0.262 -1 KIFSGRKPMLY 11 28 452.5882753549415 1354.7429966650245 3 452.587890625 MULTI HCD FTMS 0 0 0 5769 14285.5595703125 0.46690691202525847 3 -0.07953643798828125 4 Oxidation (M) _KIFSGRKPM(Oxidation (M))LY_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 1.0135738785822086 0.41447547578978133 2 K{I|L} 2 -1 20.969 0 0 1.5478 0 0 0 1110.5413530457708 1110.5413530457708 6.365006360318688 0 0 0 0 0 0 0 0 K{I|L} 1.5478 + + 2 + NaN NaN 91962.9 NaN 3625 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5774 35.36 NaN 48081 35 0 4893.3 0.261 -1 ATSDMFYF 8 28 499.20144124228773 996.3883295513755 2 499.2016296386719 MULTI HCD FTMS 0 0 0 5769 12491.513671875 0.3281135531135531 5 -0.13252639770507812 5 Oxidation (M) _ATSDM(Oxidation (M))FYF_ ENSG00000150893|ENST00000280481|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2 8.593279151180031 0.5292430274356741 2 S[PG] 3 -1 14.437 0 0 1.4489 0 0 737.2744007794937 0 737.2744007794937 0 7.983324797206281 0 0 0 0.5 0 0.5 0 S[PG] 1.4489 - 10 NaN NaN 89973.6 NaN 3626 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5775 35.363 NaN 125550 35 0 10714 0.261 + 19039 NDTRPSWC 8 43 489.70772801828804 977.4009031033761 2 489.7074279785156 MULTI HCD FTMS 0 0 0 5769 12723.8125 0.23564934050224848 6 -0.16225433349609375 6 Unmodified _NDTRPSWC_ ENST00000539777.5_1_1:168054037-168054433:-|nuORF 4.3292370932331545 0.5355693454741696 2 [DN]TVE 5 5 16.483 0 0 1.6864 0 0 0 416.14874180870737 416.14874180870737 -2.390690719683093 0 -2.390690719683093 0 0 0 0 0.3807196863200844 0 [DN]TVE 1.6864 - 55 NaN NaN 106060.3 NaN 3627 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5776 35.366 NaN 86909 35 0 19378 0.261 + 175 AENRIFEKNW 10 37 436.2237486259314 1305.6494164779942 3 436.22332763671875 MULTI HCD FTMS 0 0 0 5769 18688.15234375 0.5949689816088375 -5 0.10631561279296875 7 Unmodified _AENRIFEKNW_ tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 4.406150317652783 0.4519812505573615 2 AE 2 8 36.938 0 0 2.8291 0 0 0 1102.54499651062 1102.54499651062 36.938200260161125 0 0 0 0 0.5 1.3979400086720375 0 0 + AE 2.8291 + + 4 + NaN NaN 100521.3 NaN 3628 2146 5769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5778 35.371 NaN 43931 35 0 6256.6 0.327 + 9861 IAAGEVIQR 9 30 478.7800754754248 955.5455980176496 2 478.7797546386719 MULTI HCD FTMS 0 0 0 5777 11714.3994140625 0.3439586346239669 -2 0.056484222412109375 1 Unmodified _IAAGEVIQR_ ENSG00000076242|ENST00000231790|MLH1 16.149105407346934 0.22083165093524068 2 [{I|L}A]AGEV 6 3 22.497 0 0 2.3543 0 0 0 412.2297457330688 412.2297457330688 17.43501263708417 0 0 0 0 0.4247425010840047 0 0 0 + [{I|L}A]AGEV 2.3543 + + 18 + NaN NaN 85238.4 NaN 3629 2147 5777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5779 35.376 NaN 68362 35 0 10367 0.261 + 160 AEIVEGENHTY 11 25 631.2884973219027 1260.5624417106053 2 631.2882690429688 MULTI HCD FTMS 0 0 0 5777 36079.8046875 0.31355034560560774 -4 0.09960174560546875 2 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 29.28111348798908 0.2059830635689761 2 {[CP]|[EA]}{I|L}VEG 6 5 52.664 0 0 4.1778 0 0 0 659.2440279596311 659.2440279596311 31.694699959806982 0 0 0 0 2 0 0.4247425010840047 0 + {[CP]|[EA]}{I|L}VEG 4.1778 + + 24 + NaN NaN 104621.1 NaN 3630 2147 5777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5780 35.379 NaN 64414 35 0 6390.4 0.261 + 11785 KEEGKDRTE 9 30 546.2723680800589 1090.5301832269176 2 546.2728881835938 MULTI HCD FTMS 0 0 0 5777 11747.1005859375 0.6841664531910547 1 -0.016559600830078125 3 Unmodified _KEEGKDRTE_ REV__ENST00000261497.8_1_17:20905054-20905168:-|nuORF 20.41453444215458 0.18397929046831515 2 K[WE]K 4 -1 31.95 0 0 2.9298 0 0 0 516.2075289361936 516.2075289361936 27.346368802282015 0 0 0 0 0.8252574989159953 0 0.3252574989159953 0.4247425010840047 K[WE]K 2.9298 - 10 + NaN NaN 88127 NaN 3631 2147 5777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5781 35.383 NaN 32666 35 0 4710.7 0.261 + 8911 HPDESGSKFQL 11 19 622.799197737467 1243.583842541734 2 622.7987060546875 MULTI HCD FTMS 0 0 0 5777 26025.94921875 0.41705735155706 -3 0.07636260986328125 4 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 5.523293073838413 0.3946973793746473 2 HPD 3 8 31.198 0 0 2.5087 0 0 0 891.4248140924436 891.4248140924436 31.197887582883936 0 0 0 0 0.5 0 0 0 + HPD 2.5087 + + 6 + NaN NaN 100246.6 NaN 3632 2147 5777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5783 35.388 NaN 2648300 35 0 370970 0.327 + 13906 KYQEVTNNL 9 116 554.7850759152151 1107.55559889723 2 554.7855834960938 MULTI HCD FTMS 0 0 0 5782 1697785.5 0.9454143559650765 1 -0.036472320556640625 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 176.4269993864032 3.292532597148328E-10 2 [YK]QEVTNN{I|L} 9 0 + 95.465 0 0 8.6195 8.6195 88.828 0 0 0 1.249387366082999 14.928702923165389 1.249387366082999 1.249387366082999 0 2.638210492164445 0 1.5044321917401078 1.4476212463643423 + + [YK]QEVTNN{I|L};{[HG]|PP}PQEVTNN{I|L};[YQ]KEVTNN{I|L};[YK]QEVTNGG{I|L};[YK][AG]EVTNN{I|L};[YK]QEVTGGN{I|L};{[HG]|PP}PQEVTNGG{I|L};{[HG]|PP}PQEVTGGN{I|L};[YQ]KEVTGGN{I|L};[YQ]KEVTNGG{I|L} 8.6195;8.5067;8.077;7.7881;7.7881;7.7881;7.6792;7.6792;7.2456;7.2456 +;-;-;-;-;-;-;-;-;- + 11331 NaN NaN 478337.6 NaN 3633 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5784 35.392 NaN 425570 35 0 43510 0.261 + 30688 VPENHSVAL 9 58 483.2561437809302 964.4977346286604 2 483.2561340332031 MULTI HCD FTMS 0 0 0 5782 282495.03125 0.1516661354903053 14 -0.39736175537109375 2 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 75.76082778847304 0.0072241045649327805 2 SVA{I|L} 4 5 48.844 0 0 5.0642 0 0 576.2653065412125 0 576.2653065412125 0 11.153565665482859 0 0 0 1.1861818737241734 0 0.805462187404089 0 + SVA{I|L} 5.0642 + + 281 NaN NaN 158665.8 NaN 3634 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5785 35.396 NaN 152530 35 0 20084 0.261 + 4923 FALFMAHHF 9 47 560.7760667290253 NaN 0 560.7653198242188 PEAK HCD FTMS 0 0 0 5782 2684.53076171875 0.8565131595807386 1 -0.036472320556640625 3 Unmodified _FALFMAHHF_ chr20:36609730-36611017|388|36.57|0.0|21.8|+|0|TGIF2-RAB5IF,None|1 9.347437153973935 0.2499504662953367 2 SVH{M(Oxidation (M))|F}VT 6 8 31.631 0 0 2.8254 0 0 147.09109444092593 299.1147860162719 446.20588045719785 0 0 0 0 0 0 0 0.5 0 SVH{M(Oxidation (M))|F}VT 2.8254 - 161 + NaN NaN 110409 NaN 3635 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5786 35.399 NaN 89969 35 0 7945.7 0.262 -1 SAEPSPTVM 9 50 467.7129990212783 933.4114451093566 2 467.712890625 MULTI HCD FTMS 0 0 0 5782 44769.43359375 0.39249387473976377 15 -0.4239044189453125 4 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 36.04419817259434 0.08350412372117409 2 SAV[KT]V{M(Oxidation (M))|F} 7 -1 27.682 0 0 2.9657 0 0 183.00307216189407 0 183.00307216189407 0 21.73979484917851 0 0 0 0.5 0 0.3252574989159953 0 SAV[KT]V{M(Oxidation (M))|F} 2.9657 - 48 + NaN NaN 105878.6 NaN 3636 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5787 35.403 NaN 37904 35 0 3922.7 0.261 -1 0 27 530.7564712142082 1059.4983894952163 2 530.75634765625 MULTI HCD FTMS 0 0 0 5782 22760.984375 0.04124914044410001 16 -0.44379425048828125 5 NaN NaN 2 V 1 -1 3.4949 0 0 0.32986 0 0 551.755330268457 405.66355310611567 957.4188833745727 0 0 0 0 0 0 0 0 0 V 0.32986 - 5 + NaN NaN 90703.8 NaN 3637 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5788 35.406 NaN 63168 35 0 12983 0.261 + 30798 VPTEENEM 8 37 474.70264986850714 947.3907468038143 2 474.70263671875 MULTI HCD FTMS 0 0 0 5782 35873.25390625 0.8127485424418937 -1 0.016559600830078125 6 Unmodified _VPTEENEM_ ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 7.289230182591677 0.5311777711368266 2 VNEM 4 4 29.029 0 0 3.0641 0 0 456.1773853986344 0 456.1773853986344 0 29.028806450206233 0 0 0 0.4247425010840047 0 0 0 VNEM 3.0641 - 10 NaN NaN 96673 NaN 3638 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5789 35.409 NaN 85346 35 0 24889 0.261 + 176 AENRIFEKNW 10 39 436.2237486259314 1305.6494164779942 3 436.22442626953125 MULTI HCD FTMS 0 0 0 5782 22218.5234375 0.7073643246964695 -3 0.0730438232421875 7 Unmodified _AENRIFEKNW_ tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1 5.783430956126388 0.4446910851847804 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 88370.5 NaN 3639 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5790 35.413 NaN 92450 35 0 7180.6 0.261 + 9418 HPVDRIFD 8 46 499.75631661683866 997.4980803004773 2 499.7433166503906 MULTI HCD FTMS 0 0 0 5782 2794.318115234375 0.07285802433362516 8 -0.2348785400390625 8 Unmodified _HPVDRIFD_ ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant 5.760428011301431 0.5334459684533844 2 ME{[VA]|[{I|L}G]} 4 7 18.5 0 0 1.8546 0 0 549.2925576948118 0 549.2925576948118 0 6.817496819840656 0 0 0 0 0 0.7302046884880937 0 ME{[VA]|[{I|L}G]} 1.8546 - 80 + NaN NaN 102211 NaN 3640 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5791 35.416 NaN 121400 35 0 11019 0.261 + 32130 VYSHVIQKL 9 41 543.8189999235394 1085.6234469138788 2 543.8189086914062 MULTI HCD FTMS 0 0 0 5782 21355.107421875 0.4348720896009164 -2 0.043064117431640625 9 Unmodified _VYSHVIQKL_ ENSG00000135094|ENST00000257549|SDS 27.628801355627647 0.12213550946336599 2 [YV][HS]V{I|L}Q[K{I|L}] 9 0 + 33.094 0 0 3.0484 3.0484 85.405 0 0 0 13.507156430982874 26.104247496837026 13.507156430982874 9.208187539523756 0 1.1421590589602533 1.6989700043360187 0 0 + + [YV][HS]V{I|L}Q[K{I|L}];[YV][HS]V{I|L}[AG][K{I|L}] 3.0484;2.2002 +;- + 70 NaN NaN 101706.4 NaN 3641 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5792 35.419 NaN 54890 35 0 7284.9 0.261 + 12824 KYEQGYQKS 9 39 565.7770483331693 1129.5395437331385 2 565.7770385742188 MULTI HCD FTMS 0 0 0 5782 12319.06640625 0.8246152414064093 1 -0.036472320556640625 10 Unmodified _KYEQGYQKS_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 2.9952420565917617 0.3283108881486655 2 KY 2 7 17.959 0 0 1.5899 0 0 0 835.3579195611936 835.3579195611936 17.95880017344075 0 0 0 0 0 0 0 0 + KY 1.5899 + + 1 + NaN NaN 97281.7 NaN 3642 2148 5782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5794 35.424 NaN 1290000 35 0 123670 0.327 + 13907 KYQEVTNNL 9 99 554.7850759152151 1107.55559889723 2 555.7875366210938 MULTI HCD FTMS 0 0 0 5793 288102.6875 0.8594806283979849 2 -0.052989959716796875 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 67.83816525789305 0.009787749748478139 2 C(Carbamidomethyl (C))Q{[SA]|[TG]}ATNN{I|L} 9 5 51.027 0 0 4.6072 0 0 130.09626388340638 0 130.09626388340638 0 -3.2043938935080973 -3.2043938935080973 0 0 1.2346368802282017 0 0.5796896906561032 1.781234684152075 C(Carbamidomethyl (C))Q{[SA]|[TG]}ATNN{I|L} 4.6072 - 3886 + NaN NaN 277698.7 NaN 3643 2149 5793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5795 35.429 NaN 619750 35 0 91846 0.263 -1 RYVRKFVLM 9 63 409.9057362128441 1226.6953792387324 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5793 181031.921875 0.9076462765332397 1 -0.023189544677734375 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 11.494710602746466 0.2610445893512368 2 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.3405 0 0 948.5657233322855 0 948.5657233322855 0 13.494850021680094 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3405 + + 44 + NaN NaN 181146.3 NaN 3644 2149 5793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5796 35.432 NaN 299590 35 0 26766 0.261 + 9388 HPTDVDYRV 9 58 551.2700392028908 1100.5255254725814 2 551.2703857421875 MULTI HCD FTMS 0 0 0 5793 143331.90625 0.8460655944092708 4 -0.10580062866210938 3 Unmodified _HPTDVDYRV_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 24.020572477871973 0.15282392193088168 2 HPNQVER 7 5 48.963 0 0 4.4491 0 0 0 237.0786532037719 237.0786532037719 38.5057918858201 0 0 0 0 0.5 0 0.8807196863200843 0.3252574989159953 HPNQVER 4.4491 - 159 + NaN NaN 123265.7 NaN 3645 2149 5793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5797 35.436 NaN 186200 35 0 32830 0.261 + 4155 ETNYGIPQR 9 41 539.2698163543312 1076.5250797754622 2 539.282470703125 MULTI HCD FTMS 0 0 0 5793 51952.32421875 0.6487421330267711 2 -0.052989959716796875 4 Unmodified _ETNYGIPQR_ ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF 14.838274106304384 0.23215694253501695 2 PE 2 8 20.969 0 0 1.9479 0 0 832.4276813360287 0 832.4276813360287 0 -1.9382002601611248 -1.9382002601611248 0 0 0 0 0 0 PE 1.9479 - 31 NaN NaN 111559.2 NaN 3646 2149 5793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5798 35.439 NaN 193680 35 0 21710 0.261 + 26268 SQSPHNPLL 9 40 496.76156539634 991.50857785948 2 496.7613220214844 MULTI HCD FTMS 0 0 0 5793 92037.28125 0.7938168816805875 -2 0.05303192138671875 5 Unmodified _SQSPHNPLL_ REV__ENST00000482847.5_1_9:116154440-116155869:-|nuORF 19.256988751693697 0.19398022840297344 2 {I|L}PEH[WY] 6 -1 16.375 0 0 1.6515 0 0 148.1201140493941 0 148.1201140493941 0 9.385475209128064 0 0 0 0 0 0 0 {I|L}PEH[WY] 1.6515 - 35 + NaN NaN 119350.2 NaN 3647 2149 5793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5799 35.442 NaN 147860 35 0 12208 0.261 + 4709 EYQKVGQSF 9 52 543.266844938106 1084.519136943012 2 543.2666015625 MULTI HCD FTMS 0 0 0 5793 35538.4453125 0.4824621588355798 -2 0.05303192138671875 6 Unmodified _EYQKVGQSF_ ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0-3|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 16.149105407346934 0.22083165093524068 2 NRQG 4 7 24.157 0 0 2.2274 0 0 0 626.2939377872999 626.2939377872999 5.460025441274748 0 0 0 0 0 0 0 0 NRQG 2.2274 - 171 + NaN NaN 103215.6 NaN 3648 2149 5793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5801 35.448 NaN 4701600 35 0 375910 0.327 + 10764 ISELEDLSEL 10 100 574.2907273567691 1146.5669017803382 2 574.2910766601562 MULTI HCD FTMS 0 0 0 5800 2986886.5 0.7278018695496545 -2 0.059661865234375 1 Unmodified _ISELEDLSEL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 74.92900055777586 0.011744908545316337 2 HP{I|L}SDHEVT{I|L} 10 8 + 81.672 0 0 7.1232 7.1232 86.735 0 0 0 33.10525350536075 3.2331348114792036 3.2331348114792036 1.9504625720438895 0 3.079689690656103 0 2.2104093769761874 0 HP{I|L}SDHEVT{I|L};{I|L}HPSDHEVT{I|L};H{I|L}PSDHEVT{I|L};{[TV]|[{I|L}S]}EHDPHVT{I|L};{[YC]|[HE]}V[PS]HEVT{I|L};[{I|L}T]DHDPHVT{I|L};{[TV]|[{I|L}S]}EHDVPHT{I|L};{[TV]|[{I|L}S]}EHDPVHT{I|L};[{I|L}P][DV]{[{M(Oxidation (M))|F}D]|MM}EVT{I|L};{[YC]|[HE]}V[PS]EHVT{I|L} 7.1232;6.9531;6.9508;6.3768;6.2232;5.7633;5.5716;5.4288;5.2043;5.1045 -;-;-;-;-;-;-;-;-;- 9532 + NaN NaN 797580.6 NaN 3649 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5802 35.452 NaN 524150 35 0 58000 0.261 + 2602 DTVAQITQR 9 70 516.2777019266745 1030.5408509201488 2 516.2777709960938 MULTI HCD FTMS 0 0 0 5800 293430.46875 0.6918185959547757 3 -0.082611083984375 2 Unmodified _DTVAQITQR_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 140.63315402491853 1.8728231636916273E-05 2 {[ES]|[DT]|[{I|L}C]}VA{I|L}QTQR 9 2 + 81.913 0 0 7.9485 7.9485 91.98 0 0 0 0.5339564285261389 0.5339564285261389 0.5339564285261389 9.208187539523749 0 2.9247425010840047 0 2.416386562212267 0.3252574989159953 {[ES]|[DT]|[{I|L}C]}VA{I|L}QTQR;{[ES]|[DT]|[{I|L}C]}VA{I|L}QT[AG]R;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]TQR;{[ES]|[DT]|[{I|L}C]}VA{I|L}QA{[SA]|[TG]}R;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]T[AG]R;{[ES]|[DT]|[{I|L}C]}VA[TA]{[VA]|[{I|L}G]}QR;{[MG]|[TS]}[TP]{I|L}QTQR;{[ES]|[DT]|[{I|L}C]}VA{I|L}[AG]A{[SA]|[TG]}R;{[MG]|[TS]}[TP]{I|L}QT[AG]R;{[ES]|[DT]|[{I|L}C]}V{[QD]|[EN]|[WG]|[KD]|[RS]}{[VA]|[{I|L}G]}QR 7.9485;7.055;6.7394;5.9813;5.8501;5.2486;4.8012;4.7764;3.9076;3.7905 -;-;-;-;-;-;-;-;-;- 555 NaN NaN 167522.2 NaN 3650 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5803 35.456 NaN 419790 35 0 90812 0.263 + 8913 HPDESGSKFQL 11 62 415.53497513989885 1243.5830960198966 3 415.534912109375 MULTI HCD FTMS 0 0 0 5800 89363.0546875 0.748081917286789 -2 0.059661865234375 3 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 32.61649475675321 0.18450215852572865 2 {I|L} 1 10 21.99 0 0 1.7683 0 0 1112.4886116222387 0 1112.4886116222387 0 5.791812460476251 0 0 0 0.5 0 0 0 + {I|L} 1.7683 + + 15 + NaN NaN 148297.5 NaN 3651 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5804 35.459 NaN 193550 35 0 18934 0.261 + 18299 MPEKEPSVL 9 55 523.2652934037458 1044.5160338742915 2 523.265380859375 MULTI HCD FTMS 0 0 0 5800 62760.42578125 0.5382176578691542 -5 0.1327056884765625 4 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 47.594388314883695 0.03493607795751234 2 [{I|L}P][MT][KT]EPE 9 7 + 26.634 0 0 2.5498 2.5498 87.486 0 0 0 5.748031033778748 5.430599746173218 5.430599746173218 20.48455006504028 0 0.7302046884880937 1.3979400086720375 0 0 [{I|L}P][MT][KT]EPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VV[KT]EPE 2.5498;0.5887 -;- 80 NaN NaN 105043.6 NaN 3652 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5805 35.462 NaN 375180 35 0 50846 0.261 + 8972 HPDYREIS 8 60 508.7433225615273 1015.4720921898546 2 508.7431945800781 MULTI HCD FTMS 0 0 0 5800 57007.71484375 0.5878206526069049 -3 0.07622146606445312 5 Unmodified _HPDYREIS_ REV__ENSG00000179454|ENST00000396128|KLHL28 19.256988751693697 0.45210759540527456 2 TVE 3 -1 34.253 0 0 3.3731 0 0 0 683.2917483517726 683.2917483517726 12.597046968434142 0 0 0 0 0 0 0.805462187404089 0 TVE 3.3731 - 52 + NaN NaN 137356.4 NaN 3653 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5806 35.466 NaN 31441 35 0 6086.1 0.261 + 9322 HPRAPDYD 8 22 485.7224905970856 969.4304282609712 2 485.72222900390625 MULTI HCD FTMS 0 0 0 5800 3308.5390625 0.17278404371120965 2 -0.059528350830078125 6 Unmodified _HPRAPDYD_ ENST00000490021.2_1_1:110230443-110251195:+|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 84648.2 NaN 3654 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5807 35.469 NaN 46196 35 0 6375.1 0.261 + -1 TLLTCCCCI 9 23 600.7466323315052 1199.4787117298104 2 600.747314453125 MULTI HCD FTMS 0 0 0 5800 11750.96484375 0.4417983269584044 -2 0.059661865234375 7 4 Carbamidomethyl (C) _TLLTC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))I_ REV__ENSG00000124067|ENST00000316341|SLC12A4;REV__ENST00000572010.5_1_16:67986261-67997363:-|nuORF;REV__ENST00000573023.6_1_16:67984709-67996179:-|nuORF;REV__ENST00000576462.1_1_16:67991639-68002357:-|nuORF;REV__nc|ENSG00000124067|Q9UP95-2|SLC12A4;REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4;REV__nc|ENSG00000124067|Q9UP95-4|SLC12A4;REV__nc|ENSG00000124067|Q9UP95-5|SLC12A4;REV__nc|ENSG00000124067|Q9UP95-6|SLC12A4;REV__nc|ENSG00000124067|Q9UP95-7|SLC12A4 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98162.1 NaN 3655 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5808 35.472 NaN 61789 35 0 6069.6 0.262 + 30544 VMTPYLQQ 8 34 490.2478187918669 NaN 0 490.2640380859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _VMTPYLQQ_ ENSG00000188582|ENST00000340634|PAQR9 2.0597508629832335 0.38822285293237185 2 T 1 7 6.9897 0 0 0.71434 0 0 230.09749197650882 644.3040005942115 874.4014925707204 0 0 0 0 0 0 0 0 0 + T 0.71434 + + 3 + NaN NaN 99578.1 NaN 3656 2150 5800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5810 35.477 NaN 225740 35 0 45604 0.327 + 9605 HSLPQEPVM 9 39 527.2553496620409 1052.4961463908817 2 527.2553100585938 MULTI HCD FTMS 0 0 0 5809 95974.3671875 0.810329860939334 4 -0.10891342163085938 1 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 60.07390631473393 0.0174780869009295 2 [HS]{I|L}PQEPV{M(Oxidation (M))|F} 9 0 + 56.577 0 0 5.3755 5.3755 89.246 0 0 0 7.147642715192504 41.09243748081781 7.147642715192504 13.015384402724592 0 2.1677353201839438 0 0 0.3807196863200844 + + [HS]{I|L}PQEPV{M(Oxidation (M))|F};[HS]{I|L}P[AG]EPV{M(Oxidation (M))|F} 5.3755;4.1389 +;- + 166 NaN NaN 119181.3 NaN 3657 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5811 35.482 NaN 263310 35 0 56389 0.261 + 28484 TPPPDDPRL 9 32 504.2615118917363 1006.5084708502726 2 504.2614440917969 MULTI HCD FTMS 0 0 0 5809 79991.1875 0.7933303321894378 -2 0.052989959716796875 2 Unmodified _TPPPDDPRL_ ENSG00000110025|ENST00000377244|SNX15;ENST00000526702.1_1_11:64795036-64803275:+|nuORF;nc|ENSG00000110025|Q9NRS6-2|SNX15 18.1463463914782 0.20357593197100715 2 [TP]P 3 6 30.942 0 0 3.0742 0 0 0 708.3285006158811 708.3285006158811 27.84318117920506 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + [TP]P 3.0742 + + 4 + NaN NaN 126522.1 NaN 3658 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5812 35.485 NaN 234860 35 0 27072 0.262 + 31668 VYKDHQTITI 10 51 406.5558946016593 1216.645854405178 3 406.55572509765625 MULTI HCD FTMS 0 0 0 5809 38129.83984375 0.44448973272527326 2 -0.0528106689453125 3 Unmodified _VYKDHQTITI_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 11.517880264261096 0.4033776509493788 2 T{I|L} 2 8 30.886 0 0 2.5386 0 0 984.5030236485943 0 984.5030236485943 0 15.400990676322905 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + T{I|L} 2.5386 + + 28 NaN NaN 123540.1 NaN 3659 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5813 35.489 NaN 128650 35 0 27391 0.261 -1 RYLEKPMEI 9 38 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 5809 43512.30078125 0.10285958376250172 -10 0.23884201049804688 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 K 1 -1 11.99 0 0 1.0045 0 0 504.2256622646875 558.2673433893186 1062.493005654006 0 0 0 0 0 0.5 0 0 0 K 1.0045 + + 13 + NaN NaN 105573.9 NaN 3660 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5814 35.492 NaN 77595 35 0 13558 0.261 + 4828 EYWSSFDDI 9 28 581.2407388773602 1160.4669248215203 2 581.2403564453125 MULTI HCD FTMS 0 0 0 5809 23651.73828125 0.4097985303050556 4 -0.10891342163085938 5 Unmodified _EYWSSFDDI_ ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103594.4 NaN 3661 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5815 35.495 NaN 42272 35 0 4524.6 0.261 + 32481 WERAHSQQV 9 27 570.7806363114386 1139.546719689677 2 570.7805786132812 MULTI HCD FTMS 0 0 0 5809 17285.216796875 0.4797564103634394 5 -0.145416259765625 6 Unmodified _WERAHSQQV_ ENSG00000181215|ENST00000531445|C4orf50 2.9952420565917617 0.3283108881486655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 91471.4 NaN 3662 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5816 35.499 NaN 484080 35 0 147070 0.262 + 29792 VEHQFGAQ 8 57 458.21951677742936 914.4244806216587 2 458.2195739746094 MULTI HCD FTMS 0 0 0 5809 17560.306640625 0.593331981803445 -2 0.052989959716796875 7 Unmodified _VEHQFGAQ_ ENSG00000076513|ENST00000261739|ANKRD13A 20.453626601364224 0.4433031943603284 2 VEHD 4 5 36.119 0 0 3.95 0 0 0 431.2170504205688 431.2170504205688 9.427302493441125 0 0 0 0 0.3807196863200844 0 1.3807196863200843 0 VEHD 3.95 - 50 + NaN NaN 161257.3 NaN 3663 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5817 35.502 NaN 16575 35 0 3874.3 0.261 -1 TEQEEADSQGC 11 11 627.2329486986955 1252.451344464191 2 627.2329711914062 MULTI HCD FTMS 0 0 0 5809 9156.5810546875 0.08325949825463287 46 -1.1664962768554688 8 Carbamidomethyl (C) _TEQEEADSQGC(Carbamidomethyl (C))_ ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88310 NaN 3664 2151 5809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5819 35.507 NaN 187180 35 0 16200 0.327 + 24484 RYLECISCGSS 11 44 609.2678160851141 1216.521079237028 2 609.2681884765625 MULTI HCD FTMS 0 0 0 5818 142627.5625 1 0 0 1 Unmodified _RYLECISCGSS_ ENSG00000011422|ENST00000340093|PLAUR;ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR 19.361941925380144 0.2883811769592959 2 STGE{I|L}{[MG]|[TS]}{I|L} 8 8 53.408 0 0 4.3902 0 0 410.12910659004064 0 410.12910659004064 0 40.648350154927826 0 0 0 2.6237125054200234 0 1.1307196863200843 0 STGE{I|L}{[MG]|[TS]}{I|L} 4.3902 - 130 NaN NaN 113570.8 NaN 3665 2152 5818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5820 35.511 NaN 230570 35 0 21938 0.264 + 24485 RYLECISCGSS 11 67 406.51457092712104 1216.5218833815632 3 406.5144958496094 MULTI HCD FTMS 0 0 0 5818 76382.53125 0.8210955051721145 -1 0.029727935791015625 2 Unmodified _RYLECISCGSS_ ENSG00000011422|ENST00000340093|PLAUR;ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR 7.608950283845883 0.38555039536024605 2 E{I|L}{[MG]|[TS]}{I|L} 5 8 26.823 0 0 2.2049 0 0 655.2333834809757 0 655.2333834809757 0 12.843181179205061 0 0 0 0.7614393726401688 0 0 0 E{I|L}{[MG]|[TS]}{I|L} 2.2049 - 20 + NaN NaN 113272 NaN 3666 2152 5818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5821 35.515 NaN 86088 35 0 7263.9 0.261 -1 IMNHRVCFMLA 11 37 469.89415738596426 1406.6606427580928 3 469.8946228027344 MULTI HCD FTMS 0 0 0 5818 13126.43359375 0.5601530784509559 9 -0.24166107177734375 3 Carbamidomethyl (C),Oxidation (M) _IMNHRVC(Carbamidomethyl (C))FM(Oxidation (M))LA_ nc|ENSG00000186268|Q8NGN7|OR10D4P 1.3296431237094175 0.4130893034510334 2 PE 2 -1 20.969 0 0 1.4907 0 0 1162.5416494486506 0 1162.5416494486506 0 3.7337181718130097 0 0 0 0 0 0 0 PE 1.4907 - 15 NaN NaN 88787.3 NaN 3667 2152 5818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5822 35.518 NaN 51359 35 0 6268.2 0.261 -1 HAIEREFRIM 10 26 439.8958601555446 1316.6657510668338 3 439.89617919921875 MULTI HCD FTMS 0 0 0 5818 14137.1875 0.4799092883502137 -7 0.19223403930664062 4 Oxidation (M) _HAIEREFRIM(Oxidation (M))_ ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;ENSG00000111271|ENST00000313698|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENST00000502746.5_1_12:112153629-112167643:+|nuORF;ENST00000514847.5_1_12:112150343-112159544:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 1.3296431237094175 0.46826569222252473 2 HA 2 -1 20.969 0 0 1.5926 0 0 0 1105.545757632133 1105.545757632133 16.989700043360187 0 0 0 0 0 0 0 0 HA 1.5926 + + 2 + NaN NaN 97598.5 NaN 3668 2152 5818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5823 35.522 NaN 39488 35 0 6308.7 0.261 + 14237 LCEAPLPPM 9 24 485.7408232462701 969.4670935593402 2 485.7405090332031 MULTI HCD FTMS 0 0 0 5818 10969.1318359375 0.44505642415317015 -3 0.0827178955078125 5 Unmodified _LCEAPLPPM_ REV__ENSG00000147724|ENST00000395297|FAM135B;REV__ENST00000482951.6_1_8:139144838-139379577:-|nuORF;REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B;REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B;REV__nc|ENSG00000147724|Q49AJ0-4|FAM135B 2.302733041254933 0.33356062215410776 2 P 1 -1 5.4846 0 0 0.56573 0 0 416.1713049176397 453.2236422174438 869.3949471350835 0 0 0 0 0 0 0 0 0 P 0.56573 + + 2 + NaN NaN 89671.4 NaN 3669 2152 5818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5824 35.525 NaN 230160 35 0 29471 0.261 + 8608 HDCRDEQTVP 10 63 400.51002111904836 1198.508233957345 3 400.5103759765625 MULTI HCD FTMS 0 0 0 5818 11869.447265625 1 0 0 6 Unmodified _HDCRDEQTVP_ REV__ENSG00000116580|ENST00000368331|GON4L;REV__ENST00000468867.1_1_1:155802637-155823172:-|nuORF;REV__ENST00000471341.5_1_1:155785942-155827007:-|nuORF;REV__ENST00000488251.1_1_1:155801400-155823571:-|nuORF;REV__GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;REV__nc|ENSG00000116580|Q3T8J9-2|GON4L;REV__nc|ENSG00000116580|Q3T8J9-3|GON4L 1.4551175022131473 0.4676015363898197 2 Q 1 -1 6.9897 0 0 0.5832 0 0 86.07584358659967 981.3385892741331 1067.4144328607329 0 0 0 0 0 0 0 0 0 Q 0.5832 + + 9 + NaN NaN 124534.8 NaN 3670 2152 5818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5826 35.53 NaN 750950 35 0 107220 0.327 + 13908 KYQEVTNNL 9 77 554.7850759152151 1107.55559889723 2 554.785400390625 MULTI HCD FTMS 0 0 0 5825 427789.84375 0.238215404488557 6 -0.165557861328125 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 114.18643581695662 0.002258955990713129 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNN{I|L} 10 3 + 85.367 0 0 7.7077 7.7077 89.878 0 0 0 13.516740735028847 15.150020216108985 13.516740735028847 7.112496903393847 0 2.079689690656103 1.6989700043360187 0.3807196863200844 1.2346368802282017 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GEVKTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTGGN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GKEVTNGG{I|L};[YK]QEVTNN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GEVKTNGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GEVKTGGN{I|L};[YQ]KEVTNN{I|L};[YK][AG]EVTNN{I|L};[YK]QEVTGGN{I|L} 7.7077;7.0655;6.8802;6.8802;6.4873;6.238;6.238;6.215;5.6559;5.6559 -;-;-;-;+;-;-;-;-;- + 1389 NaN NaN 192515.8 NaN 3671 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5827 35.535 NaN 202950 35 0 20878 0.261 + 30689 VPENHSVAL 9 50 483.2561437809302 964.4977346286604 2 483.2560729980469 MULTI HCD FTMS 0 0 0 5825 134911.734375 0.0724315089522511 19 -0.5153579711914062 2 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 36.506200033944 0.08138327636155518 2 SVA{I|L} 4 5 45.477 0 0 4.7151 0 0 576.2632313459 0 576.2632313459 0 28.399028321079953 0 0 0 0.5 0 1.1549471895720984 0 + SVA{I|L} 4.7151 + + 101 NaN NaN 117323.1 NaN 3672 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5828 35.538 NaN 93633 35 0 11212 0.261 + 161 AEIVEGENHTY 11 26 631.2884973219027 1260.5624417106053 2 631.2883911132812 MULTI HCD FTMS 0 0 0 5825 72094.2265625 0.6265324840484106 2 -0.056102752685546875 3 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 43.476825903602695 0.1145582081028919 2 {[CP]|[EA]}{I|L}VEGEN 8 3 58.237 0 0 4.6199 0 0 0 416.15793787174067 416.15793787174067 33.54425638516595 0 0 0 0 2 0 0.4247425010840047 0 + {[CP]|[EA]}{I|L}VEGEN 4.6199 + + 89 + NaN NaN 89027.2 NaN 3673 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5829 35.541 NaN 73945 35 0 6054.3 0.261 + 8912 HPDESGSKFQL 11 38 622.799197737467 1243.583842541734 2 622.799072265625 MULTI HCD FTMS 0 0 0 5825 60785.75 0.9740718270957707 3 -0.0926055908203125 4 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 7.846045518447754 0.3845105762037768 2 HPD 3 8 31.198 0 0 2.5087 0 0 0 891.4180391900999 891.4180391900999 19.960762528683702 0 0 0 0 0.5 0 0 0 + HPD 2.5087 + + 17 + NaN NaN 97148.7 NaN 3674 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5830 35.545 NaN 73374 35 0 21559 0.261 + -1 TALDCLSGGTC 11 22 577.7436841039121 1153.472815274624 2 577.7440185546875 MULTI HCD FTMS 0 0 0 5825 12607.0029296875 0.37150126838373676 1 -0.0363311767578125 5 2 Carbamidomethyl (C) _TALDC(Carbamidomethyl (C))LSGGTC(Carbamidomethyl (C))_ REV__ENST00000355360.8_1_1:249211585-249211759:+|nuORF 5.296884461304476 0.39569033063702824 2 D{I|L}[PG] 4 -1 20.445 0 0 1.7725 0 0 753.279588767775 0 753.279588767775 0 20.445312593723983 0 0 0 0 0 0.4247425010840047 0 D{I|L}[PG] 1.7725 - 3 NaN NaN 97803.5 NaN 3675 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5831 35.548 NaN 40343 35 0 7335.5 0.262 + 14166 LAHFLKEV 8 23 478.7800754754248 955.5455980176496 2 478.779296875 MULTI HCD FTMS 0 0 0 5825 26875.09375 0.7891075099030926 4 -0.11577224731445312 6 Unmodified _LAHFLKEV_ DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17 1.844237919475145 0.5392561982033289 2 E 1 7 2.2185 0 0 0.23217 0 0 495.38038913268707 328.10553919010005 823.4859283227871 0 0 0 0 0 0 0 0 0 + E 0.23217 + + 1 + NaN NaN 95722.3 NaN 3676 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5832 35.551 NaN 100500 35 0 31662 0.261 + -1 LCHYLSPEFF 10 22 438.20550280845214 1311.5946790255564 3 438.2057800292969 MULTI HCD FTMS 0 0 0 5825 32424.701171875 0.6400167022089138 -1 0.023082733154296875 7 Carbamidomethyl (C) _LC(Carbamidomethyl (C))HYLSPEFF_ REV__ENSG00000118160|ENST00000236877|SLC8A2 1.9063754702782614 0.46521295622613185 2 {I|L}P 2 -1 19.464 0 0 1.484 0 0 0 1098.434516573873 1098.434516573873 4.859856381998782 0 0 0 0 0 0 0 0 {I|L}P 1.484 - 4 + NaN NaN 94933.1 NaN 3677 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5833 35.555 NaN 45691 35 0 6583.4 0.261 + 20824 PHSPPPRHES 10 22 570.7806363114386 1139.546719689677 2 570.7947387695312 MULTI HCD FTMS 0 0 0 5825 8610.6611328125 0.23899149917986334 7 -0.20203018188476562 8 Unmodified _PHSPPPRHES_ REV__ENST00000275525.7_1_7:45928064-45928574:+|nuORF 1.4819007175156935 0.4674597685733628 2 HPV 3 -1 26.198 0 0 2.299 0 0 0 803.3676400503572 803.3676400503572 26.197887582883936 0 0 0 0 0 0 0 0 HPV 2.299 - 5 + NaN NaN 93143.9 NaN 3678 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5834 35.558 NaN 49342 35 0 7996.5 0.263 -1 AEMEERFYRY 10 21 470.54330659613845 1408.6080903886154 3 470.87799072265625 MULTI HCD FTMS 0 0 0 5825 8217.3466796875 0.4475414312453435 2 -0.056102752685546875 9 Oxidation (M) _AEM(Oxidation (M))EERFYRY_ CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;ENST00000536999.1_1_12:6705170-6707214:-|nuORF;nc|ENSG00000111642|Q14839-2|CHD4 0.6268255596534771 0.47198581731947004 2 P 1 -1 5.4846 0 0 0.38936 0 0 148.01349026803615 1160.5201333647935 1308.5336236328296 0 0 0 0 0 0 0 0 0 P 0.38936 - 2 + NaN NaN 88378.9 NaN 3679 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5835 35.561 NaN 40848 35 0 7240.7 0.261 + -1 AIDCDHYIS 9 25 547.2363999163587 NaN 0 547.2362670898438 PEAK HCD FTMS 0 0 0 5825 15537.5458984375 0.8181658255719466 2 -0.056102752685546875 10 Carbamidomethyl (C) _AIDC(Carbamidomethyl (C))DHYIS_ REV__sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1 3.944395688203298 0.27613285122220627 2 D 1 -1 11.99 0 0 1.0975 0 0 184.12262972365562 790.2849812484079 974.4076109720636 0 0 0 0 0 0.5 0 0 0 D 1.0975 + + 1 + NaN NaN 91789.6 NaN 3680 2153 5825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5837 35.567 NaN 151170 35 0 18785 0.327 -1 FSLTMMVIF 9 40 560.7764742888575 NaN 0 560.7656860351562 PEAK HCD FTMS 0 0 0 5836 4997.45556640625 0.6678668942224505 -3 0.089141845703125 1 2 Oxidation (M) _FSLTM(Oxidation (M))M(Oxidation (M))VIF_ ENSG00000107951|ENST00000263063|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF;nc|ENSG00000107951|Q9NVV4-2|MTPAP 11.640296217721598 0.23883959125015683 2 SVH{M(Oxidation (M))|F}VT 6 -1 28.621 0 0 2.5565 0 0 147.08976452029088 299.1145113580688 446.2042758783597 0 0 0 0 0 0 0 0.5 0 SVH{M(Oxidation (M))|F}VT 2.5565 - 148 + NaN NaN 105263.2 NaN 3681 2154 5836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5838 35.571 NaN 93345 35 0 7482.4 0.261 + 8538 HAIETEEGL 9 46 499.74287250527397 997.471192077348 2 499.7428894042969 MULTI HCD FTMS 0 0 0 5836 29463.064453125 0.5921832972555754 4 -0.10597610473632812 2 Unmodified _HAIETEEGL_ ENSG00000077684|ENST00000226319|JADE1;ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-2|JADE1;nc|ENSG00000077684|Q6IE81-3|JADE1 30.636539890814138 0.10832830463492794 2 EG{I|L} 3 6 28.065 0 0 2.8136 0 0 680.3122425763687 0 680.3122425763687 0 0.909817168486935 0 0 0 0.6382104921644451 0 0 0 + EG{I|L} 2.8136 + + 53 NaN NaN 99899.3 NaN 3682 2154 5836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5839 35.574 NaN 97058 35 0 13751 0.261 + 27609 TAHFEQNTL 9 35 530.7571095018764 1059.4996660705526 2 530.7565307617188 MULTI HCD FTMS 0 0 0 5836 44700.125 0.2484790170097517 -4 0.1189422607421875 3 Unmodified _TAHFEQNTL_ ENSG00000153975|ENST00000368576|ZUP1 19.361941925380144 0.1930734562688509 2 QNT{I|L} 4 5 39.819 0 0 3.7583 0 0 585.2535267560562 0 585.2535267560562 0 29.361693706699093 0 0 0 0.6643943297944485 0 0 0.4247425010840047 + QNT{I|L} 3.7583 + + 37 NaN NaN 108718.1 NaN 3683 2154 5836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5840 35.578 NaN 73740 35 0 9090 0.261 + -1 PPSTEGDVM 9 41 474.70264986850714 947.3907468038143 2 474.7024841308594 MULTI HCD FTMS 0 0 0 5836 21138.779296875 0.4789226008723666 5 -0.1292266845703125 4 Oxidation (M) _PPSTEGDVM(Oxidation (M))_ REV__ENSG00000177302|ENST00000321105|TOP3A;REV__nc|ENSG00000177302|Q13472-2|TOP3A;REV__nc|ENSG00000177302|Q13472-3|TOP3A 2.302733041254933 0.33356062215410776 2 VNM 3 -1 26.198 0 0 2.7653 0 0 585.2389393537125 0 585.2389393537125 0 6.276362525516529 0 0 0 0 0 0 0 VNM 2.7653 - 21 NaN NaN 95416.5 NaN 3684 2154 5836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5841 35.581 NaN 21590 35 0 10007 0.261 + -1 WWPYLLCVC 9 10 648.8003540039062 NaN 0 648.8003540039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _WWPYLLC(Carbamidomethyl (C))VC(Carbamidomethyl (C))_ REV__ENST00000324695.8_1_2:234873347-234879062:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93573.8 NaN 3685 2154 5836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5843 35.586 NaN 4764000 35 0 400380 0.327 + 10765 ISELEDLSEL 10 102 574.2907273567691 1146.5669017803382 2 574.291259765625 MULTI HCD FTMS 0 0 0 5842 3160334.25 0.7700651415953721 3 -0.08620452880859375 1 Unmodified _ISELEDLSEL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 74.92900055777586 0.011744908545316337 2 {[TV]|[{I|L}S]}[DP]HHEVT{I|L} 10 7 + 87.93 0 0 7.669 7.669 89.601 0 0 0 6.570137341235736 6.570137341235736 6.570137341235736 6.570137341235736 0 1.7302046884880937 1.3979400086720375 2.504432191740108 0 {[TV]|[{I|L}S]}[DP]HHEVT{I|L};HP{I|L}SDHEVT{I|L};H{I|L}PSDHEVT{I|L};{I|L}HPSDHEVT{I|L};{[TV]|[{I|L}S]}EHDPHVT{I|L};{[TV]|[{I|L}S]}[DP]HEHVT{I|L};{[YC]|[HE]}V[PS]HEVT{I|L};[{I|L}T]DHDPHVT{I|L};{[TV]|[{I|L}S]}EHDPVHT{I|L};{[TV]|[{I|L}S]}[DP]HEVHT{I|L} 7.669;7.0959;6.9236;6.8568;6.5964;6.5503;6.3232;6.0091;5.6484;5.6023 -;-;-;-;-;-;-;-;-;- 11706 NaN NaN 797514.2 NaN 3686 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5844 35.591 NaN 511090 35 0 67605 0.264 -1 RYVRKFVLM 9 64 409.9057362128441 1226.6953792387324 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5842 147853.25 0.7412971725975509 7 -0.19898605346679688 2 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 8.155526934196011 0.2891920862272901 2 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.3405 0 0 948.5660590256449 0 948.5660590256449 0 15.880456295278407 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3405 + + 33 + NaN NaN 171486.6 NaN 3687 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5845 35.594 NaN 352900 35 0 83843 0.261 + 8914 HPDESGSKFQL 11 47 415.53497513989885 1243.5830960198966 3 415.5350036621094 MULTI HCD FTMS 0 0 0 5842 99276.2421875 0.8310678485237697 3 -0.08620452880859375 3 Unmodified _HPDESGSKFQL_ ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 7.846045518447754 0.3845105762037768 2 {I|L} 1 10 20.485 0 0 1.6472 0 0 1112.4889778331762 0 1112.4889778331762 0 9.68765315847925 0 0 0 0.5 0 0 0 + {I|L} 1.6472 + + 8 + NaN NaN 131292.6 NaN 3688 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5846 35.598 NaN 257950 35 0 22312 0.261 + 91 ADKMDMSL 8 56 492.7042071103343 983.3938612874687 2 492.7043762207031 MULTI HCD FTMS 0 0 0 5842 117070.234375 0.4673313494062159 -3 0.07918548583984375 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 82.5293158979368 0.015232234617846252 2 {M(Oxidation (M))|F}S{I|L} 3 5 38.5 0 0 3.915 0 0 618.2316216069845 0 618.2316216069845 0 21.81027485662266 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.915 + + 27 NaN NaN 128271.7 NaN 3689 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5847 35.601 NaN 132930 35 0 14478 0.261 + 19083 NESFTVQPR 9 54 539.2698163543312 1076.5250797754622 2 539.2822265625 MULTI HCD FTMS 0 0 0 5842 7558.9462890625 0.09439052078504276 8 -0.22552871704101562 5 Unmodified _NESFTVQPR_ REV__ENSG00000169896|ENST00000544665|ITGAM;REV__nc|ENSG00000169896|P11215-2|ITGAM 7.289230182591677 0.29575926068275815 2 TPE 3 -1 24.693 0 0 2.2937 0 0 731.376268455275 0 731.376268455275 0 16.86636269262294 0 0 0 0 0 0 0 TPE 2.2937 - 49 NaN NaN 103988 NaN 3690 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5848 35.604 NaN 129220 35 0 6509.8 0.261 + 9116 HPGGPLTDPPN 11 48 551.2700392028908 1100.5255254725814 2 551.7552490234375 MULTI HCD FTMS 0 0 0 5842 19051.44140625 0.1755953527493708 9 -0.24541854858398438 6 Unmodified _HPGGPLTDPPN_ ENST00000587176.5_1_19:55666069-55669122:-|nuORF 10.799506525563784 0.36298595732910816 2 HPNQVE 6 9 51.631 0 0 4.6915 0 0 0 393.1872957818969 393.1872957818969 42.180475292681265 0 0 0 0 0.5 0 0.5 0.3494850021680094 HPNQVE 4.6915 - 83 + NaN NaN 98570 NaN 3691 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5849 35.608 NaN 203810 35 0 20379 0.261 + 17419 LYRGSTSTF 9 66 516.2609498882563 1030.5073468433125 2 516.2767944335938 MULTI HCD FTMS 0 0 0 5842 44687 1 0 0 7 Unmodified _LYRGSTSTF_ ENSG00000115221|ENST00000283249|ITGB6;nc|ENSG00000115221|P18564-2|ITGB6 19.361941925380144 0.1930734562688509 2 EHT{M(Oxidation (M))|F} 4 7 32.141 0 0 3.119 0 0 498.28843886543126 0 498.28843886543126 0 5.14136888583522 0 0 0 0.9247425010840047 0 0.3252574989159953 0 EHT{M(Oxidation (M))|F} 3.119 - 161 NaN NaN 107891.6 NaN 3692 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5850 35.611 NaN 76094 35 0 7048.2 0.261 + 30969 VRSNGAEFL 9 38 496.76156539634 991.50857785948 2 496.7616882324219 MULTI HCD FTMS 0 0 0 5842 45129.72265625 0.38924156845511054 4 -0.10945510864257812 8 Unmodified _VRSNGAEFL_ ENST00000435221.6_1_1:2487647-2488066:+|nuORF 6.723162845929126 0.3000504726104499 2 V 1 8 4.6041 0 0 0.46435 0 0 260.18956038076755 629.2440889947874 889.433649375555 0 0 0 0 0 0 0 0 0 + V 0.46435 + + 7 + NaN NaN 92422 NaN 3693 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5851 35.614 NaN 86558 35 0 11372 0.261 + 4396 EYATKISRF 9 29 557.7979477852716 1113.5813426373431 2 557.7982177734375 MULTI HCD FTMS 0 0 0 5842 38415.80859375 0.8451229239614716 -2 0.056102752685546875 9 Unmodified _EYATKISRF_ ENSG00000057757|ENST00000246151|PITHD1;nc|ENSG00000057757|Q9GZP4-2|PITHD1 10.799506525563784 0.2670509983294061 2 [YE]ATK{I|L} 6 3 48.416 0 0 4.3478 0 0 0 405.18903528385005 405.18903528385005 35.75257498915995 0 0 0 0 0 2 0 0 + [YE]ATK{I|L} 4.3478 + + 24 + NaN NaN 111082 NaN 3694 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5852 35.618 NaN 56329 35 0 6149.4 0.261 + 31234 VVQKLQQFP 9 30 543.8189999235394 1085.6234469138788 2 543.8187255859375 MULTI HCD FTMS 0 0 0 5842 25177.0234375 0.5127009935328884 5 -0.14592742919921875 10 Unmodified _VVQKLQQFP_ REV__ENSG00000034152|ENST00000342679|MAP2K3;REV__ENSG00000108984|ENST00000590474|MAP2K6;REV__ENST00000477540.1_1_17:21215348-21217539:+|nuORF;REV__nc|ENSG00000034152|P46734-2|MAP2K3;REV__nc|ENSG00000034152|P46734-3|MAP2K3;REV__nc|ENSG00000108984|P52564-2|MAP2K6 1.844237919475145 0.33703635659052655 2 T 1 -1 3.9794 0 0 0.36655 0 0 774.1213544839944 207.43634973697502 981.5577042209694 0 0 0 0 0 0 0 0 0 T 0.36655 - 1 + NaN NaN 95272 NaN 3695 2155 5842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5854 35.623 NaN 243620 35 0 30553 0.327 + 18300 MPEKEPSVL 9 58 523.2652934037458 1044.5160338742915 2 523.265380859375 MULTI HCD FTMS 0 0 0 5853 85799.3125 0.7357933673281383 1 -0.023166656494140625 1 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 55.50274090549119 0.023872834264864425 2 V{I|L} 2 7 22.959 0 0 2.198 0 0 814.3578358380875 0 814.3578358380875 0 1.2197782962326897 0 0 0 0.5 0 0 0 + V{I|L} 2.198 + + 119 NaN NaN 137480.2 NaN 3696 2156 5853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5855 35.627 NaN 176480 35 0 28391 0.261 -1 HSLPQEPVM 9 40 527.2553496620409 1052.4961463908817 2 527.255126953125 MULTI HCD FTMS 0 0 0 5853 64611.3671875 0.5455260787066298 9 -0.23209762573242188 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 31.26834338654808 0.10542797264966089 2 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 9 -1 + 42.425 0 0 4.0309 4.0309 89.963 0 0 0 5.6424927368725974 33.84189037913593 5.6424927368725974 42.42538423561818 0 1.8494850021680094 0 0 0.3807196863200844 [HS]{I|L}[QP]E[VP]{M(Oxidation (M))|F} 4.0309 + + 122 NaN NaN 112620.9 NaN 3697 2156 5853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5856 35.631 NaN 61788 35 0 8899.5 0.261 + 28340 TPAPPTHAL 9 30 452.7478482886085 903.481143644017 2 452.747802734375 MULTI HCD FTMS 0 0 0 5853 28665.861328125 0.6984018089927152 -1 0.036502838134765625 3 Unmodified _TPAPPTHAL_ ENSG00000165684|ENST00000684778|SNAPC4 14.838274106304384 0.23215694253501695 2 [TP]AP 4 5 26.198 0 0 2.8997 0 0 0 534.2685030572874 534.2685030572874 23.97940008672037 0 0 0 0 1 0 0 0 + [TP]AP 2.8997 + + 12 + NaN NaN 89435.4 NaN 3698 2156 5853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5857 35.634 NaN 245160 35 0 33357 0.261 + 20049 NYIKRNWRI 9 63 421.57543540392237 1261.7044768119672 3 421.57568359375 MULTI HCD FTMS 0 0 0 5853 74221.890625 0.4235800703220169 -3 0.0926055908203125 4 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 13.614867670302875 0.2427269026982664 2 NY{I|L} 3 6 49.882 0 0 3.9535 0 0 0 868.489466079677 868.489466079677 40.590292461168204 0 0 0 0 0.6694451763165201 2 0 0 + NY{I|L} 3.9535 + + 22 + NaN NaN 122242.5 NaN 3699 2156 5853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5858 35.637 NaN 83593 35 0 6792.3 0.261 + 756 ASDCPGESTL 10 38 490.20547578795765 978.3963986427153 2 490.20574951171875 MULTI HCD FTMS 0 0 0 5853 31925.013671875 0.6307608379557825 -2 0.0562744140625 5 Unmodified _ASDCPGESTL_ nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B 22.736283301280096 0.29844449404982915 2 DYY{M(Oxidation (M))|F}T{I|L} 6 7 40.718 0 0 4.1618 0 0 158.06840712715 0 158.06840712715 0 29.916440611282624 0 0 0 0.805462187404089 0 0.4247425010840047 0 DYY{M(Oxidation (M))|F}T{I|L} 4.1618 - 47 NaN NaN 106657 NaN 3700 2156 5853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5859 35.641 NaN 26760 35 0 4870.6 0.261 + 25744 SKWDFEEEM 9 20 600.7466323315052 1199.4787117298104 2 600.746337890625 MULTI HCD FTMS 0 0 0 5853 12787.3310546875 0.48076234941924373 4 -0.10942459106445312 6 Unmodified _SKWDFEEEM_ ENSG00000137270|ENST00000259803|GCM1 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86665.4 NaN 3701 2156 5853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5861 35.646 NaN 500900 35 0 140880 0.327 -1 RYLEKPMEI 9 55 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 5860 189815.5 0.44870859437716587 -4 0.11577224731445312 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 33.4449034751529 0.0954363425218424 2 {I|L}{M(Oxidation (M))|F}DEKE 6 -1 50.667 0 0 4.2448 0 0 0 429.22563351013906 429.22563351013906 21.51986282587067 0 0 0 0 1 0 0.8807196863200843 0 {I|L}{M(Oxidation (M))|F}DEKE 4.2448 - 387 + NaN NaN 172042.8 NaN 3702 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5862 35.65 NaN 412710 35 0 35186 0.262 + 28490 TPQDHEVAL 9 69 505.2514381162267 1008.4883232992535 2 505.2519836425781 MULTI HCD FTMS 0 0 0 5860 139916 0.6913832731960335 -2 0.05966949462890625 2 Unmodified _TPQDHEVAL_ ENSG00000129204|ENST00000574788|USP6;ENSG00000170832|ENST00000300896|USP32;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;nc|ENSG00000129204|P35125-2|USP6 52.268347100219714 0.028397529699942435 2 TA{I|L} 3 6 36.995 0 0 3.6683 0 0 705.3067726917618 0 705.3067726917618 0 15.691154510433112 0 0 0 0.5 0 0.7302046884880937 0 TA{I|L} 3.6683 - 100 NaN NaN 147617.4 NaN 3703 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5863 35.654 NaN 239340 35 0 34107 0.261 + 8973 HPDYREIS 8 54 508.7433225615273 1015.4720921898546 2 508.7428894042969 MULTI HCD FTMS 0 0 0 5860 33413.4765625 0.3445346240007656 4 -0.10280609130859375 3 Unmodified _HPDYREIS_ REV__ENSG00000179454|ENST00000396128|KLHL28 19.256988751693697 0.45210759540527456 2 TVE 3 -1 34.693 0 0 3.4164 0 0 0 683.2911471002561 683.2911471002561 13.797480266894837 0 0 0 0 0 0 0.8494850021680094 0 TVE 3.4164 - 59 + NaN NaN 125406.2 NaN 3704 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5864 35.657 NaN 149170 35 0 15143 0.263 -1 KYMKEKLLF 9 53 405.89844491276324 1214.6735053384898 3 405.8981628417969 MULTI HCD FTMS 0 0 0 5860 50328.4921875 0.36643805694822235 -7 0.19838333129882812 4 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 6.630372943996041 0.3007538891620783 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5946306820429 0 1049.5946306820429 0 7.257724967479859 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 10 + NaN NaN 103861.6 NaN 3705 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5865 35.661 NaN 63373 35 0 9606.3 0.261 -1 TSDPNAVVM 9 31 475.2183829452161 948.4222129572322 2 475.2184753417969 MULTI HCD FTMS 0 0 0 5860 20241.31640625 0.7096426120518716 -2 0.05966949462890625 5 Oxidation (M) _TSDPNAVVM(Oxidation (M))_ ENSG00000167220|ENST00000300605|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;nc|ENSG00000167220|Q9H0R4-2|HDHD2 13.90604991867851 0.24021115267848145 2 VV{M(Oxidation (M))|F} 3 -1 40.005 0 0 4.2181 0 0 585.2398548810562 0 585.2398548810562 0 40.00508444608478 0 0 0 1.3807196863200843 0 0 0 VV{M(Oxidation (M))|F} 4.2181 + + 14 NaN NaN 86227.5 NaN 3706 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5866 35.664 NaN 102350 35 0 12902 0.261 -1 YFGFCYRCF 9 42 440.5159974073498 1318.5261628222495 3 440.5157470703125 MULTI HCD FTMS 0 0 0 5860 21845.513671875 0.3192961789065263 -11 0.30110931396484375 6 2 Carbamidomethyl (C) _YFGFC(Carbamidomethyl (C))YRC(Carbamidomethyl (C))F_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|125|1|anti-sense 0.26902006276349055 0.3489776809129786 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2885 0 0 1153.4475017888494 0 1153.4475017888494 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2885 + + 5 + NaN NaN 100439.1 NaN 3707 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5867 35.667 NaN 32629 35 0 4812.7 0.261 + 28107 TIESESYWAS 10 22 586.7587662008624 1171.5029794685247 2 586.7576904296875 MULTI HCD FTMS 0 0 0 5860 13790.57421875 0.7136302484606328 -2 0.05966949462890625 7 Unmodified _TIESESYWAS_ REV__ENSG00000136536|ENST00000409175|MARCHF7;REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 1.4819007175156935 0.4674597685733628 2 P 1 -1 3.9794 0 0 0.33968 0 0 883.0331746362966 188.3948916070922 1071.428066243389 0 0 0 0 0 0 0 0 0 P 0.33968 - 1 + NaN NaN 93330.5 NaN 3708 2157 5860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5869 35.673 NaN 266590 35 0 40878 0.327 + 13909 KYQEVTNNL 9 53 554.7850759152151 1107.55559889723 2 554.785400390625 MULTI HCD FTMS 0 0 0 5868 143044.84375 0.07965473190107422 11 -0.28176116943359375 1 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 65.47368725323818 0.010552856507075443 2 NTVE[C(Carbamidomethyl (C))K]{I|L} 7 7 58.095 0 0 5.2454 0 0 245.13734633613439 0 245.13734633613439 0 47.29827590147018 0 0 0 1.9247425010840047 0 0.6109243748081782 1.055462187404089 NTVE[C(Carbamidomethyl (C))K]{I|L} 5.2454 - 84 NaN NaN 135093.3 NaN 3709 2158 5868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5870 35.677 NaN 94390 35 0 10883 0.261 + 30690 VPENHSVAL 9 38 483.2561437809302 964.4977346286604 2 483.25604248046875 MULTI HCD FTMS 0 0 0 5868 55818.69140625 0.02996797917560489 24 -0.619171142578125 2 Unmodified _VPENHSVAL_ ENSG00000168143|ENST00000306858|FAM83B 32.78568957990786 0.09846250359632436 2 SVA{I|L} 4 5 41.542 0 0 4.3071 0 0 576.2667103498062 0 576.2667103498062 0 26.057743964882718 0 0 0 0.5 0 0.7614393726401688 0 + SVA{I|L} 4.3071 + + 32 NaN NaN 106467.1 NaN 3710 2158 5868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5871 35.681 NaN 83418 35 0 8907.5 0.261 + 26556 SVNDNLKPERG 11 37 614.8179891591639 1227.6214253851276 2 614.8179931640625 MULTI HCD FTMS 0 0 0 5868 32676.880859375 0.7768631202100664 -1 0.0265350341796875 3 Unmodified _SVNDNLKPERG_ REV__ENSG00000119487|ENST00000265960|MAPKAP1;REV__ENST00000437973.2_1_9:128321910-128347898:-|nuORF;REV__nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1 9.5439744041441 0.373925449867384 2 [DV]SNP[QT]V[VG]{[NV]|[RG]} 12 -1 + 60.639 0 0 4.9395 4.9395 85.36 0 0 0 45.18114684785509 9.71726222832956 9.71726222832956 7.676736265146893 0 1.6307196863200843 1.6989700043360187 0 0.5 [DV]SNP[QT]V[VG]{[NV]|[RG]};[DV]SNP[QT]VR{[NV]|[RG]} 4.9395;4.3142 -;- 47 + NaN NaN 102909.2 NaN 3711 2158 5868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5872 35.684 NaN 84419 35 0 8178.2 0.263 + 8175 GPSENDPNL 9 35 471.7117731922232 941.4089934512464 2 471.7116394042969 MULTI HCD FTMS 0 0 0 5868 35808.65234375 0.8346046154734186 -2 0.049701690673828125 4 Unmodified _GPSENDPNL_ ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 8.155526934196011 0.2891920862272901 2 ND[NP]{I|L} 5 4 15.713 0 0 1.6691 0 0 370.14900405097814 0 370.14900405097814 0 15.713337517843655 0 0 0 0.5 0 0 0 + ND[NP]{I|L} 1.6691 + + 8 NaN NaN 111423.5 NaN 3712 2158 5868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5873 35.687 NaN 32320 35 0 5773.5 0.261 + 16328 LRKGFAAF 8 30 455.26841244774664 NaN 0 455.5575866699219 PEAK HCD FTMS 0 0 0 5868 5057.9873046875 1 0 0 5 Unmodified _LRKGFAAF_ REV__ENST00000563065.5_1_15:43477607-43487036:+|nuORF;REV__ENST00000569745.5_1_15:43477607-43487036:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87461.1 NaN 3713 2158 5868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5874 35.691 NaN 19255 35 0 3956.6 0.262 -1 PRNECYLAL 9 25 568.2820434570312 NaN 0 568.2820434570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _PRNEC(Carbamidomethyl (C))YLAL_ ENSG00000177409|ENST00000318238|SAMD9L 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83454.3 NaN 3714 2158 5868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5876 35.696 NaN 176640 35 0 15487 0.327 + 27750 TATKIEITM 9 43 512.2732283726733 1022.5319038121467 2 512.2730712890625 MULTI HCD FTMS 0 0 0 5875 96327.15625 0.28129062272119226 -4 0.10945510864257812 1 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 63.960520009940105 0.0120409805053046 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 59.9 0 0 5.858 5.858 93.173 0 0 0 47.68114684785509 16.478174818886373 16.478174818886373 59.89963434401865 0 1.805462187404089 0 0.7742275032520141 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 5.858 + + 46 + NaN NaN 111133.1 NaN 3715 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5877 35.7 NaN 168710 35 0 20222 0.261 + 9493 HPYERSLD 8 50 508.7433225615273 1015.4720921898546 2 508.7430114746094 MULTI HCD FTMS 0 0 0 5875 15125.9267578125 0.15596717325771536 6 -0.15914535522460938 2 Unmodified _HPYERSLD_ REV__ENSG00000113273|ENST00000264914|ARSB;REV__ENST00000521011.1_1_5:78076222-78079308:-|nuORF 16.942295170755138 0.46913822049235215 2 TVE 3 -1 29.693 0 0 2.924 0 0 0 683.2871798150999 683.2871798150999 11.249387366082999 0 0 0 0 0 0 0.3494850021680094 0 TVE 2.924 - 22 + NaN NaN 107248.5 NaN 3716 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5878 35.704 NaN 96849 35 0 9743.3 0.261 + 9120 HPGQGGTSYVV 11 49 551.2700392028908 1100.5255254725814 2 551.7547607421875 MULTI HCD FTMS 0 0 0 5875 13778.5947265625 0.12699601829642335 13 -0.34980010986328125 3 Unmodified _HPGQGGTSYVV_ REV__ENSG00000183801|ENST00000329293|OLFML1;REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF 15.248480904072842 0.3242218977034194 2 HPNQVE 6 -1 46.419 0 0 4.2179 0 0 0 393.18866907291255 393.18866907291255 30.934947104849044 0 0 0 0 0.5 0 0.4247425010840047 0.3807196863200844 HPNQVE 4.2179 - 65 + NaN NaN 115105.5 NaN 3717 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5879 35.707 NaN 104300 35 0 28587 0.262 -1 LTCYQQLLCN 10 26 438.20550280845214 1311.5946790255564 3 438.20538330078125 MULTI HCD FTMS 0 0 0 5875 13829.236328125 0.2729691225796562 5 -0.13596343994140625 4 2 Carbamidomethyl (C) _LTC(Carbamidomethyl (C))YQQLLC(Carbamidomethyl (C))N_ ENST00000276055.3_1_X:46457223-46457370:+|nuORF 1.7422754331352037 0.46608156381052757 2 {I|L}P 2 -1 19.464 0 0 1.484 0 0 0 1098.4362706530903 1098.4362706530903 19.463950151760656 0 0 0 0 0 0 0 0 {I|L}P 1.484 - 5 + NaN NaN 109551.2 NaN 3718 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5880 35.71 NaN 21933 35 0 4053.1 0.261 + 9302 HPPYMLRCDL 10 15 622.799197737467 1243.583842541734 2 622.799072265625 MULTI HCD FTMS 0 0 0 5875 21181.2578125 0.33942275118113113 9 -0.23534011840820312 5 Unmodified _HPPYMLRCDL_ REV__ENSG00000157933|ENST00000378536|SKI 1.5922808571145555 0.4668755089467872 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93261.4 NaN 3719 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5881 35.714 NaN 111550 35 0 28189 0.262 + 4013 ERQQDYVL 8 26 525.7636565040449 1049.5127600748897 2 525.7633666992188 MULTI HCD FTMS 0 0 0 5875 37898.91015625 0.8052787012249928 -3 0.0729522705078125 6 Unmodified _ERQQDYVL_ REV__ENSG00000138180|ENST00000371485|CEP55;REV__nc|ENSG00000138180|Q53EZ4-2|CEP55 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110659 NaN 3720 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5882 35.717 NaN 28486 35 0 4992.7 0.261 + 9430 HPVGFHPRHG 10 16 570.7940708078561 1139.573588682512 2 570.7941284179688 MULTI HCD FTMS 0 0 0 5875 22786.3984375 0.9433111115603081 3 -0.08953094482421875 7 Unmodified _HPVGFHPRHG_ ENST00000374606.9_1_6:33257467-33257957:+|nuORF;ENST00000395131.5_1_6:33257384-33257957:+|nuORF 3.2813086475875832 0.45793521633868084 2 HPV 3 7 23.188 0 0 2.0348 0 0 0 803.3688461550051 803.3688461550051 16.197887582883936 0 0 0 0 0 0 0 0 + HPV 2.0348 + + 4 + NaN NaN 92589.8 NaN 3721 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5883 35.72 NaN 42096 35 0 6659.6 0.261 + 22591 QTGELLTGR 9 23 487.7675782720611 973.5206036109222 2 487.7671203613281 MULTI HCD FTMS 0 0 0 5875 17234.0078125 0.9782069386326141 -1 0.023250579833984375 8 Unmodified _QTGELLTGR_ ENST00000494120.1_1_1:38156027-38157161:-|nuORF 3.2813086475875832 0.32614229037259 2 T{I|L} 2 7 8.5835 0 0 0.8817 0 0 362.2385734368972 394.13620935611567 756.3747827930129 0 0 0 0 0 0 0 0 0 T{I|L} 0.8817 - 7 + NaN NaN 93554.3 NaN 3722 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5884 35.724 NaN 18860 35 0 5228.6 0.261 + 162 AEIVEGENHTY 11 13 631.2884973219027 1260.5624417106053 2 631.2885131835938 MULTI HCD FTMS 0 0 0 5875 9875.33203125 0.0858212453805586 8 -0.19886398315429688 9 Unmodified _AEIVEGENHTY_ ENSG00000196924|ENST00000369850|FLNA;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 2.0860074813731053 0.4097721463192591 2 VE 2 9 10.969 0 0 0.87018 0 0 313.1611488412678 716.2651461236936 1029.4262949649615 0 0 0 0 0 0 0 0 0 + VE 0.87018 + + 3 + NaN NaN 79350.1 NaN 3723 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5885 35.727 NaN 21460 35 0 6808.2 0.261 + -1 IWIMQGMKW 9 13 604.8026048312013 NaN 0 604.8010864257812 PEAK HCD FTMS 0 0 0 5875 13004.0126953125 0.8652046715991679 1 -0.036472320556640625 10 Oxidation (M) _IWIM(Oxidation (M))QGMKW_ REV__ENST00000463046.5_1_2:61456104-61456719:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84175 NaN 3724 2159 5875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5887 35.732 NaN 1653100 35 0 140520 0.327 + 29778 VEEETVEVLT 10 76 574.2907273567691 1146.5669017803382 2 574.291015625 MULTI HCD FTMS 0 0 0 5886 860618.5625 0.20970324743060584 8 -0.1988677978515625 1 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 61.357469665136826 0.03648492562855298 2 HP{I|L}{[DS]|[MA]|[CV]|TT}HEVT{I|L} 10 -1 + 74.109 0 0 6.4636 6.4636 85.665 0 0 0 27.206225184280797 3.3142436645285756 3.3142436645285756 2.1741655787624836 0 3.024227503252014 0 2.305462187404089 0 HP{I|L}{[DS]|[MA]|[CV]|TT}HEVT{I|L};H{I|L}P{[DS]|[MA]|[CV]|TT}HEVT{I|L};{I|L}HP{[DS]|[MA]|[CV]|TT}HEVT{I|L};[{I|L}T]DHDPHVT{I|L};{[TV]|[{I|L}S]}EHDPHVT{I|L};[{I|L}T]DHDVPHT{I|L};[{I|L}T]DHDPVHT{I|L};H{I|L}VEHTTD[VP];{I|L}HVEHTTD[VP];{[TV]|[{I|L}S]}EHDVPHT{I|L} 6.4636;6.2739;6.1672;5.5915;4.6348;4.5434;4.4345;3.811;3.7043;3.5868 -;-;-;-;-;-;-;-;-;- 4207 + NaN NaN 333727.2 NaN 3725 2160 5886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5888 35.737 NaN 135080 35 0 18979 0.261 -1 FSLTMMVIF 9 37 560.7767837846287 NaN 0 560.765625 PEAK HCD FTMS 0 0 0 5886 4557.75048828125 0.5006612353966903 -3 0.0862579345703125 2 2 Oxidation (M) _FSLTM(Oxidation (M))M(Oxidation (M))VIF_ ENSG00000107951|ENST00000263063|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF;nc|ENSG00000107951|Q9NVV4-2|MTPAP 11.640296217721598 0.23883959125015683 2 SVHW 4 -1 23.047 0 0 2.0587 0 0 147.09114869440253 460.1973971002563 607.2885457946588 0 0 0 0 0 0 0 0.5 0 SVHW 2.0587 - 57 + NaN NaN 125119.8 NaN 3726 2160 5886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5889 35.74 NaN 63194 35 0 9903.9 0.261 -1 LPVMAPWGL 9 34 500.27161995511034 998.5286869770207 2 500.77294921875 MULTI HCD FTMS 0 0 0 5886 15658.2041015625 1 0 0 3 Oxidation (M) _LPVM(Oxidation (M))APWGL_ ENST00000265062.7_1_3:128532272-128532644:+|nuORF 14.581692164780916 0.23437375358055648 2 {I|L}PV 3 -1 27.435 0 0 2.7475 0 0 0 686.3018282525999 686.3018282525999 20.445312593723983 0 0 0 0 0.4247425010840047 0 0 0 {I|L}PV 2.7475 + + 16 + NaN NaN 99336.3 NaN 3727 2160 5886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5890 35.744 NaN 35441 35 0 8435.5 0.261 + 30052 VFSEHLIKR 9 26 564.8298289140272 1127.6451048948543 2 564.8295288085938 MULTI HCD FTMS 0 0 0 5886 8793.5458984375 0.7850293294350635 -1 0.036472320556640625 4 Unmodified _VFSEHLIKR_ ENSG00000106341|ENST00000342032|PPP1R17;nc|ENSG00000106341|O96001-2|PPP1R17 1.844237919475145 0.33703635659052655 2 H 1 8 5.4846 0 0 0.48637 0 0 462.2096323380168 525.3505343072874 987.5601666453042 0 0 0 0 0 0 0 0 0 + H 0.48637 + + 3 + NaN NaN 84909.5 NaN 3728 2160 5886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5892 35.749 NaN 246270 35 0 26378 0.327 + 92 ADKMDMSL 8 44 492.7042071103343 983.3938612874687 2 492.7043151855469 MULTI HCD FTMS 0 0 0 5891 173964.359375 0.6944463658874146 3 -0.08294296264648438 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 76.82478488871298 0.02181697117040772 2 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 57.785 0 0 5.876 0 0 228.074998924025 0 228.074998924025 0 37.774334638038454 0 0 0 1.774227503252014 0 0.7302046884880937 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.876 + + 73 NaN NaN 125844.3 NaN 3729 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5893 35.753 NaN 272340 35 0 32328 0.261 + 27610 TAHFEQNTL 9 52 530.7571095018764 1059.4996660705526 2 530.7564086914062 MULTI HCD FTMS 0 0 0 5891 147136.078125 0.817899906525318 3 -0.08294296264648438 2 Unmodified _TAHFEQNTL_ ENSG00000153975|ENST00000368576|ZUP1 31.26834338654808 0.10542797264966089 2 QNT{I|L} 4 5 40.79 0 0 3.8499 0 0 585.2527692852087 0 585.2527692852087 0 33.80001899740286 0 0 0 0.7614393726401688 0 0 0.4247425010840047 + QNT{I|L} 3.8499 + + 92 NaN NaN 121437.7 NaN 3730 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5894 35.757 NaN 366440 35 0 41867 0.263 -1 RYVRKFVLM 9 66 409.9057362128441 1226.6953792387324 3 409.90582275390625 MULTI HCD FTMS 0 0 0 5891 92983.8359375 0.46619641217046826 13 -0.33404541015625 3 Oxidation (M) _RYVRKFVLM(Oxidation (M))_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 12.240655878213236 0.2545997876781172 2 {I|L}{M(Oxidation (M))|F} 2 -1 27.959 0 0 2.2792 0 0 948.5649733678765 0 948.5649733678765 0 11.505149978319906 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2792 + + 31 NaN NaN 140747.5 NaN 3731 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5895 35.76 NaN 124060 35 0 10732 0.261 -1 MPEKEPSVL 9 51 523.2652934037458 1044.5160338742915 2 523.2650146484375 MULTI HCD FTMS 0 0 0 5891 71548.4609375 0.6135816414653543 6 -0.145843505859375 4 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 29.84058131909904 0.11198220037953927 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 3 -1 17.76 0 0 1.7003 0 0 0 668.3635124722008 668.3635124722008 13.155528020725814 0 0 0 0 0.8807196863200843 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 1.7003 + + 25 NaN NaN 110931.2 NaN 3732 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5896 35.764 NaN 70045 35 0 7641.8 0.261 -1 LPQHPDVEM 9 33 541.2515239173474 1080.4884949014947 2 541.2525634765625 MULTI HCD FTMS 0 0 0 5891 29661.291015625 0.585146546515213 -3 0.07627105712890625 5 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 23.789781309258295 0.1548179064208189 2 VE{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.2805 0 0 687.33305556465 0 687.33305556465 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 VE{M(Oxidation (M))|F} 3.2805 + + 23 NaN NaN 88224.1 NaN 3733 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5897 35.767 NaN 61456 35 0 6285.1 0.261 + 34725 YPVKEQESI 9 34 546.7823504281865 1091.550147923173 2 546.7823486328125 MULTI HCD FTMS 0 0 0 5891 35094.73828125 0.740059885172036 -2 0.053020477294921875 6 Unmodified _YPVKEQESI_ ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5 14.405379775768559 0.2358970535022398 2 YPV 3 6 31.198 0 0 2.8581 0 0 0 729.3441256158811 729.3441256158811 13.010299956639813 0 0 0 0 0.5 0 0 0 + YPV 2.8581 + + 24 + NaN NaN 98062.2 NaN 3734 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5898 35.77 NaN 52765 35 0 9792.2 0.261 -1 LPVMAPWGL 9 29 500.27161995511034 998.5286869770207 2 500.7743225097656 MULTI HCD FTMS 0 0 0 5891 10814.2958984375 0.6906472688881583 1 -0.036510467529296875 7 Oxidation (M) _LPVM(Oxidation (M))APWGL_ ENST00000265062.7_1_3:128532272-128532644:+|nuORF 5.230669730166228 0.3113646817964458 2 {I|L}PV 3 -1 26.198 0 0 2.6236 0 0 0 686.3015841119749 686.3015841119749 15.740312677277187 0 0 0 0 0 0 0 0 {I|L}PV 2.6236 + + 19 + NaN NaN 99392.1 NaN 3735 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5899 35.773 NaN 29943 35 0 6631.5 0.261 + 4397 EYATKISRF 9 23 557.7979477852716 1113.5813426373431 2 557.7986450195312 MULTI HCD FTMS 0 0 0 5891 6428.2861328125 0.14141813413520973 4 -0.1061248779296875 8 Unmodified _EYATKISRF_ ENSG00000057757|ENST00000246151|PITHD1;nc|ENSG00000057757|Q9GZP4-2|PITHD1 2.9952420565917617 0.3283108881486655 2 {I|L} 1 8 6.9897 0 0 0.62768 0 0 592.2851523070682 405.1887301080688 997.473882415137 0 0 0 0 0 0 0 0 0 + {I|L} 0.62768 + + 1 + NaN NaN 91261.4 NaN 3736 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5900 35.777 NaN 26840 35 0 6784.7 0.261 + 20293 NYNLAKMNKN 10 17 605.3047485351562 NaN 0 605.3047485351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _NYNLAKMNKN_ REV__ENSG00000081386|ENST00000223428|ZNF510 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84527 NaN 3737 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5901 35.78 NaN 14528 35 0 3952.5 0.261 + 8793 HIKKPMDFF 9 13 581.8092651367188 NaN 0 581.8092651367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _HIKKPMDFF_ ENSG00000156983|ENST00000383829|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201|BRPF1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87226.5 NaN 3738 2161 5891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5903 35.785 NaN 396520 35 0 57408 0.327 + 20050 NYIKRNWRI 9 53 421.57543540392237 1261.7044768119672 3 421.575439453125 MULTI HCD FTMS 0 0 0 5902 142822.96875 0.8150824862759176 3 -0.06961441040039062 1 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 38.61474834105838 0.07170385841135779 2 NY{I|L}KRNW[R{I|L}] 9 0 + 73.778 0 0 5.8475 5.8475 88.303 0 0 0 63.29312592315027 2.922152515121226 2.922152515121226 9.208187539523749 0 0.7614393726401688 2 0 0 + + NY{I|L}KRNW[R{I|L}];NY{I|L}KRGGW[R{I|L}];{I|L}[YN]KRNW[R{I|L}];{I|L}[YN]KRGGW[R{I|L}] 5.8475;5.1176;2.5725;1.8427 +;-;-;- + 88 + NaN NaN 151652.5 NaN 3739 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5904 35.79 NaN 99765 35 0 13218 0.261 + 13869 KYQAECSQF 9 43 552.2452345424392 1102.4759161516783 2 552.2451171875 MULTI HCD FTMS 0 0 0 5902 44376.6875 0.866537545277916 1 -0.02654266357421875 2 Unmodified _KYQAECSQF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 34.221707139014875 0.09187037853496335 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]ECSQ{M(Oxidation (M))|F} 9 2 + 54.627 0 0 4.9549 4.9549 86.878 0 0 0 3.1728747786933553 46.25472000880956 3.1728747786933553 9.208187539523749 0 1.8494850021680094 0 0 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]ECSQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]ECS[AG]{M(Oxidation (M))|F} 4.9549;4.1197 -;- 42 NaN NaN 118001.3 NaN 3740 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5905 35.793 NaN 57793 35 0 6286 0.261 + 25092 SADVNECEI 9 34 490.20547578795765 978.3963986427153 2 490.20550537109375 MULTI HCD FTMS 0 0 0 5902 18321.138671875 0.3619812633363628 4 -0.09276580810546875 3 Unmodified _SADVNECEI_ CUBN|p.K663Sfs*38|1|0.32|ENSG00000107611|chr10:17085721-17085721|C/-|frameshift_variant;CUBN|p.N1018Hfs*6|1|0.03|ENSG00000107611|chr10:17065595-17065596|-/TAGAATAAAGGGTAGTG|frameshift_variant;CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN 9.38312468134398 0.279288223203164 2 C(Carbamidomethyl (C)){I|L} 2 7 20.969 0 0 2.1432 0 0 687.2905140607437 0 687.2905140607437 0 16.365006360318688 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){I|L} 2.1432 - 4 NaN NaN 88822.3 NaN 3741 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5906 35.797 NaN 27744 35 0 4573.2 0.261 + 22161 QKRGLCTV 8 21 452.75727311264274 NaN 0 452.7478332519531 PEAK HCD FTMS 0 0 0 5902 2082.249755859375 0.3018210340956865 1 -0.02654266357421875 4 Unmodified _QKRGLCTV_ CFLAR|p.E398K|1|0.3|ENSG00000003402|chr2:201160830-201160830|G/A|missense_variant;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-3|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-7|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89021.1 NaN 3742 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5907 35.8 NaN 37629 35 0 6857.9 0.261 + 15824 LPIFLFFC 8 18 500.27161995511034 998.5286869770207 2 500.27178955078125 MULTI HCD FTMS 0 0 0 5902 13269.22265625 0.8870178768157589 1 -0.02654266357421875 5 Unmodified _LPIFLFFC_ ENST00000412278.2_3_11:66413513-66413711:+|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}P 2 6 25.969 0 0 2.6007 0 0 0 785.3688241624665 785.3688241624665 18.979400086720375 0 0 0 0 0.5 0 0 0 + {I|L}P 2.6007 + + 5 + NaN NaN 88513.7 NaN 3743 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5908 35.803 NaN 23498 35 0 4343.7 0.261 + 223 AFAHFAHEKL 10 20 585.8071887228189 1169.5998245124376 2 585.806884765625 MULTI HCD FTMS 0 0 0 5902 16697.888671875 0.5930805915045364 -3 0.08953094482421875 6 Unmodified _AFAHFAHEKL_ sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1 3.2813086475875832 0.45793521633868084 2 EK{I|L} 3 7 23.188 0 0 1.9825 0 0 781.3649159162125 0 781.3649159162125 0 23.187587626244124 0 0 0 0 0 0 0 + EK{I|L} 1.9825 + + 3 NaN NaN 87256.7 NaN 3744 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5909 35.807 NaN 43555 35 0 8082.3 0.262 + 21194 PQGKLTWY 8 27 496.7636435541636 NaN 0 496.7616271972656 PEAK HCD FTMS 0 0 0 5902 5657.177734375 0.4555577303891242 1 -0.02654266357421875 7 Unmodified _PQGKLTWY_ REV__ENSG00000149972|ENST00000524871|CNTN5;REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF;REV__nc|ENSG00000149972|O94779-2|CNTN5;REV__nc|ENSG00000149972|O94779-4|CNTN5 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95608.6 NaN 3745 2162 5902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5911 35.812 NaN 1006000 35 0 257520 0.327 + 24501 RYLEKPMEI 9 82 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 5910 418936.3125 0.9903317901616471 2 -0.043071746826171875 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 70.92866715596459 0.008787713425443074 2 [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L} 9 0 + 64.79 0 0 5.4281 5.4281 89.431 0 0 0 5.902114527360283 38.92159058960253 5.902114527360283 13.430730810643468 0 2.004432191740108 0 0.3252574989159953 0.6421590589602533 + + [YR]{I|L}EKP{M(Oxidation (M))|F}E{I|L};RY{I|L}EKP{I|L}[{M(Oxidation (M))|F}E];{[QV]|[N{I|L}]|[RA]|[KV]}[YN]KE{I|L}{[MG]|[TS]}{I|L};{I|L}[YR]EKP{I|L}[{M(Oxidation (M))|F}E];[VP][HV]EKP{M(Oxidation (M))|F}E{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YN]KE{I|L}V{[DS]|[MA]|[CV]|TT};{[QN]|[E{I|L}]|[KN]}[YR]KP{M(Oxidation (M))|F}E{I|L};[YR]{I|L}EAE{I|L}{[MG]|[TS]}{I|L};{[QN]|[E{I|L}]|[KN]}[YR]AE{I|L}{[MG]|[TS]}{I|L};[YR]{I|L}EAE{I|L}V{[DS]|[MA]|[CV]|TT} 5.4281;4.3029;4.2794;3.8514;3.7189;3.65;3.4976;3.0121;2.405;2.3827 +;-;-;-;-;-;-;-;-;- + 1227 NaN NaN 238776.3 NaN 3746 2163 5910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5912 35.816 NaN 237870 35 0 17861 0.262 + 7978 GEPHTDAVAL 10 54 505.2514381162267 1008.4883232992535 2 505.2516174316406 MULTI HCD FTMS 0 0 0 5910 80598.0234375 0.39826842718023225 4 -0.08279037475585938 2 Unmodified _GEPHTDAVAL_ REV__ENSG00000102053|ENST00000338957|ZC3H12B;REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B 14.838274106304384 0.3723198072575719 2 VA{I|L} 3 -1 26.427 0 0 2.6204 0 0 707.2900257794937 0 707.2900257794937 0 15.189549981487076 0 0 0 0.5 0 0 0 VA{I|L} 2.6204 + + 23 NaN NaN 129452.4 NaN 3747 2163 5910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5913 35.82 NaN 272780 35 0 27347 0.262 -1 KYMKEKLLF 9 60 405.89844491276324 1214.6735053384898 3 405.89837646484375 MULTI HCD FTMS 0 0 0 5910 109744.03125 0.7990382351033949 -1 0.02654266357421875 3 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 8.97624648632007 0.2828035605319045 2 K{M(Oxidation (M))|F} 2 -1 25.573 0 0 2.1054 0 0 921.5018788068375 0 921.5018788068375 0 20.088643834802156 0 0 0 0.5 0 0 0.5 K{M(Oxidation (M))|F} 2.1054 - 28 NaN NaN 117763.5 NaN 3748 2163 5910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5914 35.823 NaN 68512 35 0 7217.3 0.261 + -1 PITVEMKM 8 34 482.7458403259563 963.4771277187126 2 483.2557678222656 MULTI HCD FTMS 0 0 0 5910 4740.52490234375 0.07136281719960183 -9 0.24530029296875 4 Oxidation (M) _PITVEMKM(Oxidation (M))_ REV__ENST00000460064.1_1_3:191087795-191087846:+|nuORF 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4509 0 0 798.4312883405861 0 798.4312883405861 0 11.215190243431472 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4509 + + 7 + NaN NaN 86554 NaN 3749 2163 5910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5915 35.827 NaN 67671 35 0 11283 0.261 + 12528 KRYVNDKFG 9 33 563.8037939542671 1125.5930349753341 2 563.8041381835938 MULTI HCD FTMS 0 0 0 5910 22146.2109375 0.21603731122270817 -4 0.1160736083984375 5 Unmodified _KRYVNDKFG_ REV__ENSG00000129167|ENST00000682019|TPH1;REV__nc|ENSG00000129167|P17752-2|TPH1 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 86833.3 NaN 3750 2163 5910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5917 35.832 NaN 523000 35 0 53437 0.327 + 27751 TATKIEITM 9 66 512.2732283726733 1022.5319038121467 2 512.2732543945312 MULTI HCD FTMS 0 0 0 5916 332192.09375 0.9700537683421353 1 -0.023181915283203125 1 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 103.41943736471063 0.004016698775839292 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 85.683 0 0 8.3795 8.3795 95.732 0 0 0 2.9794656189555013 2.9794656189555013 2.9794656189555013 22.965978039238735 0 2.5356668758921828 1.5228787452803376 1.0994850021680094 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};[KT][TA]{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 8.3795;6.1335;4.6952 +;-;- + 416 + NaN NaN 162216.4 NaN 3751 2164 5916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5918 35.836 NaN 522730 35 0 143310 0.261 + 15385 LPDGDHDL 8 51 441.20381893303284 880.3930849328657 2 441.2037048339844 MULTI HCD FTMS 0 0 0 5916 300409 0.38918183981530613 -5 0.13596343994140625 2 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 48.345845343767074 0.13800640434549966 2 {I|L}PD[DG]HD{I|L} 8 0 + 61.86 0 0 7.0264 7.0264 95.19 0 0 0 46.05774396488272 3.187587626244124 3.187587626244124 61.85972531752853 0 1.6989700043360187 1.6989700043360187 0.8494850021680094 0 + + {I|L}PD[DG]HD{I|L} 7.0264 + + 91 + NaN NaN 165658.3 NaN 3752 2164 5916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5919 35.84 NaN 117100 35 0 20127 0.261 + 13910 KYQEVTNNL 9 39 554.7850759152151 1107.55559889723 2 554.7852783203125 MULTI HCD FTMS 0 0 0 5916 53411.55078125 0.029742300710514636 17 -0.4466667175292969 3 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 26.020703789607367 0.13554323117744113 2 TNN{I|L} 4 5 41.938 0 0 3.7866 0 0 647.3272046719281 0 647.3272046719281 0 27.95880017344075 0 0 0 1 0 0 0 + TNN{I|L} 3.7866 + + 32 NaN NaN 99063.5 NaN 3753 2164 5916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5920 35.843 NaN 53184 35 0 5593.3 0.261 + 8176 GPSENDPNL 9 32 471.7117731922232 941.4089934512464 2 472.21282958984375 MULTI HCD FTMS 0 0 0 5916 10000.4609375 0.5056847406391403 4 -0.09937667846679688 4 Unmodified _GPSENDPNL_ ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 5.296884461304476 0.3108627248283497 2 D[NP]{I|L} 4 5 11.911 0 0 1.2653 0 0 484.19041640449376 0 484.19041640449376 0 11.911225100727592 0 0 0 0.5 0 0 0 + D[NP]{I|L} 1.2653 + + 7 NaN NaN 91610.3 NaN 3754 2164 5916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5921 35.846 NaN 50319 35 0 6659 0.261 + 20523 PDSCDSFF 8 36 459.1721419192494 NaN 0 459.17218017578125 PEAK HCD FTMS 0 0 0 5916 17746.244140625 0.9565993318811452 -31 0.7929954528808594 5 Unmodified _PDSCDSFF_ REV__ENST00000444993.6_1_9:131219684-131223448:+|nuORF 0.6903765706972694 0.38822285293237185 2 E 1 -1 1.9897 0 0 0.21714 0 0 524.8316973133051 259.43378626041255 784.2654835737176 0 0 0 0 0 0 0 0 0 E 0.21714 - 2 + NaN NaN 87961.6 NaN 3755 2164 5916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5922 35.85 NaN 13504 35 0 2771.3 0.261 -1 ENLADGYKHMS 11 13 640.7812900069963 1279.5480270807925 2 640.7813720703125 MULTI HCD FTMS 0 0 0 5916 8173.30126953125 0.7684220166639888 1 -0.023181915283203125 6 Oxidation (M) _ENLADGYKHM(Oxidation (M))S_ ENSG00000102393|ENST00000218516|GLA 0.9622753412299311 0.4147004537482263 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99065.4 NaN 3756 2164 5916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5924 35.855 NaN 260870 35 0 58063 0.327 + 2613 DVAEVDTVR 9 47 502.25658833397523 1002.4986237347505 2 502.2563781738281 MULTI HCD FTMS 0 0 0 5923 146221.84375 0.7151960507462055 -3 0.06961441040039062 1 Unmodified _DVAEVDTVR_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 80.6760300276096 0.005633624786464751 2 [DV]AEVDTVR 9 0 + 98.855 0 0 9.8608 9.8608 98.609 0 0 0 80.15784749192356 13.46787486224656 13.46787486224656 48.923268153300086 0 2.7302046884880937 2 1.1989700043360187 0 + + [DV]AEVDTVR;{[QN]|[E{I|L}]|[KN]}[DG]VDTVR;[DV][VG]EETVR;{[CP]|[EA]}[DV]VDTVR;{[QN]|[E{I|L}]|[KN]}QEETVR;{[QN]|[E{I|L}]|[KN]}[AG]EETVR;[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[HC][VG];{[QN]|[E{I|L}]|[KN]}[RD][R{M(Oxidation (M))|F}][PA];{[QN]|[E{I|L}]|[KN]}Q[VP]{[{M(Oxidation (M))|F}D]|MM}R;[VS]{[RE]|[WV]}{NN|[MP]|[D{I|L}]|[EV]}VW 9.8608;4.9807;4.2764;3.6173;2.8127;1.8888;1.1133;1.0448;0.76789;0.55817 +;-;-;-;-;-;-;-;-;- + 320 + NaN NaN 123383.4 NaN 3757 2165 5923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5925 35.859 NaN 193860 35 0 20505 0.261 -1 MVLAKNNAI 9 48 495.2771301269531 NaN 0 495.26141357421875 PEAK HCD FTMS 0 0 0 5923 5896.267578125 0.9489266777881777 -1 0.023181915283203125 2 Oxidation (M) _M(Oxidation (M))VLAKNNAI_ ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;nc|ENSG00000183091|P20929-4|NEB;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant 7.910154910731844 0.25691533546754686 2 {I|L}EDV 4 -1 16.459 0 0 1.665 0 0 158.1030728047212 371.2048433893188 529.30791619404 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}EDV 1.665 - 74 + NaN NaN 115871.2 NaN 3758 2165 5923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5926 35.863 NaN 75063 35 0 15780 0.261 + 7109 FRPEETKSG 9 25 525.7636565040449 1049.5127600748897 2 525.763671875 MULTI HCD FTMS 0 0 0 5923 32934.421875 0.6997929060163828 3 -0.07619476318359375 3 Unmodified _FRPEETKSG_ ENSG00000112651|ENST00000388752|MRPL2;ENST00000491898.5_1_6:43023672-43027146:-|nuORF 1.4819007175156935 0.3397831423917744 2 H{M(Oxidation (M))|F} 2 9 7.9588 0 0 0.75833 0 0 263.1633560287841 499.2415865533813 762.4049425821654 0 0 0 0 0 0 0 0 0 H{M(Oxidation (M))|F} 0.75833 - 3 + NaN NaN 94148.2 NaN 3759 2165 5923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5927 35.866 NaN 59469 35 0 7535.7 0.262 -1 MGKWFCHCFP 10 38 438.18669164962944 1311.5382455490883 3 438.1871337890625 MULTI HCD FTMS 0 0 0 5923 7582.9609375 0.35744380755272154 2 -0.0397186279296875 4 Carbamidomethyl (C) _MGKWFCHC(Carbamidomethyl (C))FP_ POTEC|p.C102F|1|0.22|ENSG00000183206|chr18:14542842-14542842|C/A|missense_variant 0.776531954647913 0.4711933975711956 2 S[SG] 3 -1 7.4473 0 0 0.56783 0 0 1062.444683357842 0 1062.444683357842 0 7.447274948966937 0 0 0 0 0 0 0 S[SG] 0.56783 - 1 NaN NaN 92769.6 NaN 3760 2165 5923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5928 35.87 NaN 27968 35 0 6991.1 0.261 + -1 RPCQPSTI 8 21 479.74247140059805 957.4703898679961 2 479.7423400878906 MULTI HCD FTMS 0 0 0 5923 9084.115234375 0.645472769726639 1 -0.023151397705078125 5 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))QPSTI_ REV__ENSG00000010327|ENST00000321725|STAB1;REV__ENST00000461325.1_1_3:52550214-52551339:+|nuORF 2.0597508629832335 0.5389364538378849 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.6172 0 0 792.3920950455337 0 792.3920950455337 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6172 - 3 + NaN NaN 87889.6 NaN 3761 2165 5923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5929 35.873 NaN 13077 35 0 3062.3 0.261 + 5569 FLLLSIMMACC 11 14 622.799197737467 1243.583842541734 2 622.7992553710938 MULTI HCD FTMS 0 0 0 5923 10114.0166015625 0.162073818787478 15 -0.3868904113769531 6 Unmodified _FLLLSIMMACC_ ENSG00000101276|ENST00000645534|SLC52A3;nc|ENSG00000101276|Q9NQ40-2|SLC52A3 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87527.5 NaN 3762 2165 5923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5931 35.878 NaN 786390 35 0 65470 0.327 + 29779 VEEETVEVLT 10 62 574.2907273567691 1146.5669017803382 2 574.2909545898438 MULTI HCD FTMS 0 0 0 5930 373758.96875 0.09107225072569745 14 -0.363739013671875 1 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 46.020951573049366 0.09315764076686055 2 {[TV]|[{I|L}S]}[WY]HEVT 8 -1 61.904 0 0 5.3991 0 0 0 128.0752505697573 128.0752505697573 22.945312593723983 0 0 0 0 0.9247425010840047 1.3979400086720375 2.079689690656103 0 {[TV]|[{I|L}S]}[WY]HEVT 5.3991 - 706 NaN NaN 199282 NaN 3763 2166 5930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5932 35.883 NaN 143100 35 0 16120 0.261 + 1552 AYVHMVTHF 9 55 560.7657330135318 1119.5169130938634 2 560.7657470703125 MULTI HCD FTMS 0 0 0 5930 67046.15625 0.059542135358444444 -42 1.058380126953125 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 44.40701690623563 0.04511410083598184 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VT 7 2 42.624 0 0 3.8074 0 0 0 299.1160701585697 299.1160701585697 21.65501019262713 0 0 0 0 1.8935078169319297 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VT 3.8074 + + 109 NaN NaN 112142.5 NaN 3764 2166 5930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5933 35.886 NaN 62906 35 0 5852.7 0.261 + 3162 EAVGGLQTVR 10 31 515.2882532343102 1028.5619535354203 2 515.2884521484375 MULTI HCD FTMS 0 0 0 5930 20237.4921875 0.5934779035128366 1 -0.016567230224609375 3 Unmodified _EAVGGLQTVR_ ENSG00000204267|ENST00000374897|TAP2;nc|ENSG00000204267|Q03519-2|TAP2 12.872603262515298 0.3907060291096084 2 AVR 3 7 17.792 0 0 1.7298 0 0 684.3469399629579 0 684.3469399629579 0 0.7968969065610345 0 0 0 0 0 0 0 AVR 1.7298 - 22 + NaN NaN 93403.9 NaN 3765 2166 5930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5934 35.889 NaN 38972 35 0 7609.6 0.261 -1 0 31 456.79329463629097 911.572036339382 2 456.7934265136719 MULTI HCD FTMS 0 0 0 5930 8497.7216796875 0.6566984103169744 -4 0.09276580810546875 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103155.6 NaN 3766 2166 5930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5936 35.895 NaN 180070 35 0 17640 0.327 + 93 ADKMDMSL 8 40 492.70420038823573 983.3938478432715 2 492.7045593261719 MULTI HCD FTMS 0 0 0 5935 103720.015625 0.41875701967742857 -4 0.08279037475585938 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 43.77239144664712 0.1824688044483776 2 {M(Oxidation (M))|F}S{I|L} 3 5 31.682 0 0 3.2217 0 0 618.2296620099625 0 618.2296620099625 0 15.158715643802765 0 0 0 0.5 0 0.3494850021680094 0 + {M(Oxidation (M))|F}S{I|L} 3.2217 + + 20 NaN NaN 110127.1 NaN 3767 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5937 35.899 NaN 82345 35 0 8120 0.261 + 27611 TAHFEQNTL 9 33 530.7571095018764 1059.4996660705526 2 530.756591796875 MULTI HCD FTMS 0 0 0 5935 37058.140625 0.20599876073521373 9 -0.24429702758789062 2 Unmodified _TAHFEQNTL_ ENSG00000153975|ENST00000368576|ZUP1 8.745405648335112 0.2847203663274469 2 {[{M(Oxidation (M))|F}D]|MM}[HV]SQNT{I|L} 9 4 + 36.132 0 0 3.4103 3.4103 85.678 0 0 0 0.43059974617322183 25.16257482205355 0.43059974617322183 9.208187539523756 0 0 0 0 0.4247425010840047 {[{M(Oxidation (M))|F}D]|MM}[HV]SQNT{I|L};{[{M(Oxidation (M))|F}D]|MM}[HV]S[AG]NT{I|L};{[{M(Oxidation (M))|F}D]|MM}[HV]SQGGT{I|L} 3.4103;2.5412;2.5412 -;-;- 68 NaN NaN 100018.4 NaN 3768 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5938 35.903 NaN 99220 35 0 10829 0.261 -1 LPQHPDVEM 9 37 541.2515239173474 1080.4884949014947 2 541.2530517578125 MULTI HCD FTMS 0 0 0 5935 43863.96484375 0.8653314358860585 3 -0.08953475952148438 3 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 15.248480904072842 0.22861284681709862 2 VE{M(Oxidation (M))|F} 3 -1 26.995 0 0 2.4984 0 0 687.3327503888687 0 687.3327503888687 0 14.230574646156064 0 0 0 0.3807196863200844 0 0 0 VE{M(Oxidation (M))|F} 2.4984 + + 12 NaN NaN 95884.2 NaN 3769 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5939 35.906 NaN 91111 35 0 25562 0.261 + 34726 YPVKEQESI 9 31 546.7823504281865 1091.550147923173 2 546.782470703125 MULTI HCD FTMS 0 0 0 5935 24703.31640625 0.5209308972891046 4 -0.12432861328125 4 Unmodified _YPVKEQESI_ ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5 4.897010918128616 0.31389406404703984 2 YPS 3 6 20.177 0 0 1.8485 0 0 0 741.3604830377561 741.3604830377561 6.465912507003608 0 0 0 0 0 0 0 0 YPS 1.8485 - 12 + NaN NaN 98679.3 NaN 3770 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5940 35.909 NaN 81941 35 0 15878 0.261 -1 HSLPQEPVM 9 22 527.2553496620409 1052.4961463908817 2 527.2553100585938 MULTI HCD FTMS 0 0 0 5935 29281.3203125 0.2472277641653319 20 -0.5205879211425781 5 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 16.149105407346934 0.22083165093524068 2 E[VP]{M(Oxidation (M))|F} 4 -1 26.198 0 0 2.4891 0 0 562.2867298810562 0 562.2867298810562 0 19.20818753952375 0 0 0 1 0 0 0 E[VP]{M(Oxidation (M))|F} 2.4891 + + 13 NaN NaN 91080.3 NaN 3771 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5941 35.913 NaN 50766 35 0 7361.5 0.261 + 14640 LGDYYYCV 8 30 498.2123193124113 994.4100856916226 2 498.2288513183594 MULTI HCD FTMS 0 0 0 5935 6573.9638671875 0.40343294474138747 -1 0.016567230224609375 6 Unmodified _LGDYYYCV_ ADCY2|p.C340Y|1|0.2|ENSG00000078295|chr5:7698284-7698284|G/A|missense_variant 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.7085 0 0 829.3645667480664 0 829.3645667480664 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7085 - 6 + NaN NaN 85560.1 NaN 3772 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5942 35.916 NaN 102820 35 0 15871 0.261 + 22694 QYAAVTHNI 9 40 508.7614442624536 1015.5083355917072 2 508.7614440917969 MULTI HCD FTMS 0 0 0 5935 23096.171875 1 0 0 7 Unmodified _QYAAVTHNI_ ENSG00000181433|ENST00000370709|SAGE1 8.745405648335112 0.2847203663274469 2 V 1 8 10.485 0 0 1.0324 0 0 433.1958488747135 480.22077356510005 913.4166224398135 0 0 0 0 0 0.3494850021680094 0 0 0 + V 1.0324 + + 16 + NaN NaN 96269.7 NaN 3773 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5943 35.919 NaN 46630 35 0 6138.5 0.261 -1 TSDPNAVVM 9 27 475.2183829452161 948.4222129572322 2 475.2177429199219 MULTI HCD FTMS 0 0 0 5935 14418.5498046875 0.5055015760851925 8 -0.22436141967773438 8 Oxidation (M) _TSDPNAVVM(Oxidation (M))_ ENSG00000167220|ENST00000300605|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;nc|ENSG00000167220|Q9H0R4-2|HDHD2 13.042465956692817 0.2476723265019929 2 VV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.8166 0 0 585.2407093732437 0 585.2407093732437 0 20.713337517843655 0 0 0 1 0 0 0 VV{M(Oxidation (M))|F} 3.8166 + + 10 NaN NaN 88813.4 NaN 3774 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5944 35.923 NaN 23558 35 0 4579.7 0.262 -1 TPYGGQFERM 10 19 601.2690654994452 1200.5235780656903 2 601.2696533203125 MULTI HCD FTMS 0 0 0 5935 11852.880859375 0.6684533799568462 2 -0.0596466064453125 9 Oxidation (M) _TPYGGQFERM(Oxidation (M))_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 4.189502756095605 0.45312800054222196 2 TPYG 4 -1 31.938 0 0 2.6604 0 0 0 779.3106173150999 779.3106173150999 31.938200260161125 0 0 0 0 0 0 0 0 TPYG 2.6604 + + 6 + NaN NaN 85688.2 NaN 3775 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5945 35.926 NaN 28600 35 0 6220.4 0.261 + 30754 VPLRYEQHS 9 17 564.7936006830315 1127.572648432863 2 565.7510375976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VPLRYEQHS_ REV__ENSG00000150893|ENST00000280481|FREM2;REV__FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant 0.45834013312273997 0.3475424938045562 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84731.4 NaN 3776 2167 5935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5947 35.931 NaN 194440 35 0 22074 0.327 + 20051 NYIKRNWRI 9 46 421.57543540392237 1261.7044768119672 3 421.5754699707031 MULTI HCD FTMS 0 0 0 5946 80500.8515625 0.4594137400528659 9 -0.24097824096679688 1 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 13.614867670302875 0.2427269026982664 2 NY{I|L} 3 6 47.422 0 0 3.7585 0 0 0 868.4902837401831 868.4902837401831 37.689549981487076 0 0 0 0 0.5994850021680094 2 0 0 + NY{I|L} 3.7585 + + 18 + NaN NaN 110748.6 NaN 3777 2168 5946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5948 35.936 NaN 109980 35 0 33820 0.261 -1 MPLCSGHPPI 10 36 547.2619815523349 1092.5094101714697 2 547.2619018554688 MULTI HCD FTMS 0 0 0 5946 55070.58984375 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MPLCSGHPPI_ ENST00000189444.10_1_10:104158142-104158181:+|nuORF 10.073929032068715 0.4168838835836452 2 YAP{I|L} 4 -1 33.928 0 0 3.1055 0 0 630.2489491193375 0 630.2489491193375 0 33.92790030352131 0 0 0 0.5 0 0 0 YAP{I|L} 3.1055 - 11 NaN NaN 102454.1 NaN 3778 2168 5946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5949 35.939 NaN 47360 35 0 10066 0.261 -1 NANHPDFPM 9 25 529.7217344181872 1057.4289159031744 2 529.721435546875 MULTI HCD FTMS 0 0 0 5946 12680.6123046875 0.49325605864122424 2 -0.053058624267578125 3 Oxidation (M) _NANHPDFPM(Oxidation (M))_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89141 NaN 3779 2168 5946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5950 35.942 NaN 31231 35 0 5912.7 0.261 + -1 KLEEGFCVIN 10 18 604.8026048312013 NaN 0 604.8029174804688 PEAK HCD FTMS 0 0 0 5946 5833.84814453125 0.38814731931690716 10 -0.254241943359375 4 Carbamidomethyl (C) _KLEEGFC(Carbamidomethyl (C))VIN_ REV__ENST00000519791.5_1_8:124238797-124251345:-|nuORF 5.296884461304476 0.3356508900602619 2 S 1 -1 6.9897 0 0 0.57881 0 0 621.2952598559588 496.24225794010005 1117.5375177960589 0 0 0 0 0 0 0 0 0 S 0.57881 - 1 + NaN NaN 89564.7 NaN 3780 2168 5946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5951 35.946 NaN 17526 35 0 6486 0.261 + 9578 HRRWSHYV 8 10 570.7940708078561 1139.573588682512 2 570.7942504882812 MULTI HCD FTMS 0 0 0 5946 8578.1357421875 0.355117584039134 12 -0.3106956481933594 5 Unmodified _HRRWSHYV_ REV__ENSG00000099991|ENST00000263119|CABIN1;REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85091.7 NaN 3781 2168 5946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5952 35.949 NaN 11831 35 0 2935.3 0.261 + -1 YCRRCTFW 8 14 624.7728146956989 NaN 0 625.2366333007812 PEAK HCD FTMS 0 0 0 5946 2294.122314453125 0.4052106954605673 -3 0.07619476318359375 6 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))RRC(Carbamidomethyl (C))TFW_ REV__ENSG00000186652|ENST00000311862|PRG2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86392.1 NaN 3782 2168 5946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5954 35.954 NaN 635300 35 0 176960 0.327 + 24502 RYLEKPMEI 9 61 597.8131717482389 1193.6117905632777 2 597.8133544921875 MULTI HCD FTMS 0 0 0 5953 296637.46875 0.7012271476376427 8 -0.21780776977539062 1 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 43.981846655682396 0.04706587046877104 2 {I|L}{M(Oxidation (M))|F}DEKE 6 6 59.162 0 0 4.9565 0 0 0 429.2246492975219 429.2246492975219 33.83417202263438 0 0 0 0 1.4247425010840047 0 0.9247425010840047 0.3807196863200844 {I|L}{M(Oxidation (M))|F}DEKE 4.9565 - 629 + NaN NaN 181729.2 NaN 3783 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5955 35.959 NaN 967320 35 0 324950 0.264 + 17600 LYWSHPRKF 9 54 411.88910181048436 1232.645476031653 3 411.8891296386719 MULTI HCD FTMS 0 0 0 5953 342098.40625 0.9827688765902559 -3 0.07621383666992188 2 Unmodified _LYWSHPRKF_ ENSG00000213741|ENST00000245458|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF;nc|ENSG00000213741|P62273-2|RPS29 29.84058131909904 0.11198220037953927 2 {I|L}YWSH 5 4 65.701 0 0 5.3301 0 0 0 543.3028066782108 543.3028066782108 43.48258770979733 0 0 0 0 0.7742275032520141 2 0 0 + {I|L}YWSH 5.3301 + + 167 + NaN NaN 227729.9 NaN 3784 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5956 35.962 NaN 197980 35 0 19912 0.261 -1 KYMKEKLLF 9 47 405.89844491276324 1214.6735053384898 3 405.8984069824219 MULTI HCD FTMS 0 0 0 5953 68463.84375 0.4984802203390409 5 -0.1285552978515625 3 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 10.150570793230772 0.27265765907388223 2 {I|L}{M(Oxidation (M))|F} 2 -1 22.831 0 0 1.8796 0 0 936.5117144222774 0 936.5117144222774 0 22.830918867322296 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8796 + + 11 + NaN NaN 110079.1 NaN 3785 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5957 35.966 NaN 169720 35 0 12100 0.261 + 28724 TSSGNPIFR 9 52 489.753938826987 977.493324720774 2 489.75408935546875 MULTI HCD FTMS 0 0 0 5953 37057.81640625 0.7467654702635168 -2 0.0596466064453125 4 Unmodified _TSSGNPIFR_ ENSG00000124571|ENST00000265351|XPO5 17.11289562659939 0.2125047172822487 2 {[MG]|[TS]}S[KC]APV 8 6 16.961 0 0 1.7351 0 0 0 201.08687769107658 201.08687769107658 -0.029068579146734663 0 -0.029068579146734663 0 0 0.5 0 0.4247425010840047 0 {[MG]|[TS]}S[KC]APV 1.7351 - 73 + NaN NaN 114627.4 NaN 3786 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5958 35.969 NaN 24437 35 0 3260.7 0.261 -1 MLICVFMKI 9 23 585.8071887228189 1169.5998245124376 2 585.8071899414062 MULTI HCD FTMS 0 0 0 5953 20733.4765625 0.7364178061831669 4 -0.12114334106445312 5 Carbamidomethyl (C),Oxidation (M) _MLIC(Carbamidomethyl (C))VFM(Oxidation (M))KI_ ENST00000287474.9_1_1:100195237-100203667:-|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83234.2 NaN 3787 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5959 35.972 NaN 61696 35 0 4653.5 0.262 + 7931 GDFISYCF 8 38 476.19841704564993 NaN 0 476.19873046875 PEAK HCD FTMS 0 0 0 5953 15823.9111328125 0.7532616248788315 7 -0.18465042114257812 6 Unmodified _GDFISYCF_ nc|ENSG00000196159|Q6V0I7-2|FAT4 5.230669730166228 0.38822285293237185 2 D 1 7 5.4846 0 0 0.57709 0 0 408.1489570387624 424.1832369440063 832.3321939827687 0 0 0 0 0 0 0 0 0 + D 0.57709 + + 2 + NaN NaN 93275.5 NaN 3788 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5960 35.976 NaN 54235 35 0 14995 0.261 + 31004 VSHWPGLCW 9 23 542.7569143247312 1083.4992757162622 2 543.7567749023438 MULTI HCD FTMS 0 0 0 5953 19249.412109375 0.5175766108724866 -7 0.16897964477539062 7 Unmodified _VSHWPGLCW_ REV__ENST00000450651.5_1_22:21841260-21846319:-|nuORF;REV__ENST00000467443.5_1_22:21831964-21846319:-|nuORF 2.302733041254933 0.33356062215410776 2 PD 2 -1 10.969 0 0 1.0124 0 0 111.08575442601757 757.3094576471311 868.3952120731487 0 0 0 0 0 0 0 0 0 PD 1.0124 - 3 + NaN NaN 94399 NaN 3789 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5961 35.979 NaN 30068 35 0 4516.2 0.261 + 17602 LYWSHPRKF 9 21 617.3303696813751 1232.6461864295502 2 617.3304443359375 MULTI HCD FTMS 0 0 0 5953 16565.30859375 0.7853828365348154 -1 0.02317047119140625 8 Unmodified _LYWSHPRKF_ ENSG00000213741|ENST00000245458|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF;nc|ENSG00000213741|P62273-2|RPS29 3.2813086475875832 0.32614229037259 2 [Y{I|L}]W 3 6 10.458 0 0 0.84838 0 0 0 767.3996065729124 767.3996065729124 10.45757490560675 0 0 0 0 0 0 0 0 + [Y{I|L}]W 0.84838 + + 1 + NaN NaN 83575.7 NaN 3790 2169 5953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5963 35.984 NaN 1083600 35 0 311160 0.327 + 15386 LPDGDHDL 8 73 441.20381893303284 880.3930849328657 2 441.20379638671875 MULTI HCD FTMS 0 0 0 5962 766584.875 0.9931157589389348 1 -0.034793853759765625 1 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 85.35673624503755 0.01682165142544485 2 {I|L}PD[DG]HD{I|L} 8 0 + 91.68 0 0 10.414 10.414 97.347 0 0 0 77.07625045844914 12.5190243216651 12.5190243216651 20.70107520596089 0 2.3494850021680094 1.6989700043360187 1.3851518780601921 0 + + {I|L}PD[DG]HD{I|L};[{I|L}P]D[DG]HD{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[DG]HD{I|L};[DP]{I|L}[DG]HD{I|L};[DP]D{[VA]|[{I|L}G]}HD{I|L};[{I|L}P]D[HS]T[DP];{NN|[MP]|[D{I|L}]|[EV]}P[HS]T[DP];[DP]{I|L}[HS]T[DP] 10.414;8.0622;6.38;4.8807;4.0823;3.2556;1.5733;0.07403 +;+;-;-;-;-;-;- + 277 + NaN NaN 245511.5 NaN 3791 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5964 35.989 NaN 148450 35 0 13221 0.261 + -1 PTKGLFITM 9 38 512.2831396022018 NaN 0 512.2733154296875 PEAK HCD FTMS 0 0 0 5962 2741.931640625 0.35913685017569036 -8 0.1988677978515625 2 Oxidation (M) _PTKGLFITM(Oxidation (M))_ REV__ADGRG4|p.S1264F|1|0.29|ENSG00000156920|chrX:136347497-136347497|C/T|missense_variant 19.256988751693697 0.19238547928067054 2 TK{[QN]|[E{I|L}]|[KN]}{I|L}T 6 -1 22.184 0 0 2.1695 0 0 172.10657610415757 162.0227450006469 334.1293211048045 0 0 0 0 0 0.3807196863200844 0 0.7742275032520141 0 TK{[QN]|[E{I|L}]|[KN]}{I|L}T 2.1695 - 30 + NaN NaN 104889.3 NaN 3792 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5965 35.997 NaN 107170 35 0 29776 0.261 + 27273 SYPRRFSTL 9 28 563.8037939542671 1125.5930349753341 2 563.8038940429688 MULTI HCD FTMS 0 0 0 5962 88467.40625 0.8630036366507451 3 -0.09125518798828125 3 Unmodified _SYPRRFSTL_ ENST00000403825.7_1_7:112090541-112090697:+|nuORF 9.38312468134398 0.279288223203164 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104099.6 NaN 3793 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5966 36.001 NaN 128460 35 0 14541 0.261 + 28439 TPIVERHVL 9 38 532.3167587630071 1062.618964592814 2 532.3168334960938 MULTI HCD FTMS 0 0 0 5962 54568.1171875 1 0 0 4 Unmodified _TPIVERHVL_ ENSG00000164465|ENST00000338728|DCBLD1 26.020703789607367 0.13554323117744113 2 TP{I|L}V 4 5 29.725 0 0 2.7973 0 0 0 649.3427132110962 649.3427132110962 -0.28028723600243666 0 -0.28028723600243666 0 0 0.3807196863200844 0 0 0 + TP{I|L}V 2.7973 + + 21 + NaN NaN 111690.1 NaN 3794 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5967 36.004 NaN 213150 35 0 20370 0.261 + 8126 GLSHGGSTTF 10 60 482.2300282871123 962.4455036410246 2 482.7459411621094 MULTI HCD FTMS 0 0 0 5962 4322.9443359375 0.47076248677982974 -4 0.10610198974609375 5 Unmodified _GLSHGGSTTF_ REV__CON__O95678;REV__CON__Q8BGZ7;REV__ENSG00000170454|ENST00000252245|KRT75 6.2057823575117 0.44245551207394906 2 E{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.866 0 0 668.3579619923903 0 668.3579619923903 0 3.2660625688767198 0 0 0 0 0 0.3494850021680094 0 E{M(Oxidation (M))|F} 1.866 - 75 + NaN NaN 116258.7 NaN 3795 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5968 36.007 NaN 59695 35 0 9954.1 0.261 + 13911 KYQEVTNNL 9 27 554.7850759152151 1107.55559889723 2 554.7850952148438 MULTI HCD FTMS 0 0 0 5962 43206.06640625 0.02405936170691125 23 -0.5503730773925781 6 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 18.373094154950223 0.20161688160436167 2 TNN{I|L} 4 5 43.928 0 0 3.9662 0 0 647.3269314873734 0 647.3269314873734 0 43.92790030352131 0 0 0 1.5 0 0 0 + TNN{I|L} 3.9662 + + 24 NaN NaN 98965.4 NaN 3796 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5969 36.01 NaN 95994 35 0 7369.2 0.261 -1 QPMQPTPSM 9 37 516.7281780705564 1031.4418032079127 2 516.7279052734375 MULTI HCD FTMS 0 0 0 5962 18841.193359375 0.6107102394450797 6 -0.15476226806640625 7 Oxidation (M) _QPMQPTPSM(Oxidation (M))_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 8.745405648335112 0.2847203663274469 2 S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 18.672 0 0 1.8103 0 0 632.314256736525 0 632.314256736525 0 18.67213769128441 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8103 - 5 NaN NaN 103835.6 NaN 3797 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5970 36.014 NaN 100220 35 0 14504 0.261 + 3512 EIAYSDVAK 9 50 498.2564825866476 994.4984122400953 2 498.255126953125 MULTI HCD FTMS 0 0 0 5962 31720.939453125 1 0 0 8 Unmodified _EIAYSDVAK_ ENSG00000169504|ENST00000374379|CLIC4 7.608950283845883 0.29333554423920943 2 DVVYS[DV][KA] 9 3 + 16.144 0 0 1.6233 1.6233 81.738 0 0 0 13.044993472574905 0.4305997461732183 0.4305997461732183 4.771212547196626 0 0 0 0 0 DVVYS[DV][KA];{[QN]|[E{I|L}]|[KN]}AYS[DV][KA] 1.6233;1.1436 -;+ + 18 + NaN NaN 102592.6 NaN 3798 2170 5962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5972 36.019 NaN 287130 35 0 25135 0.327 + 25170 SALEKEEAL 9 60 495.2612349461928 988.5079169591856 2 495.26129150390625 MULTI HCD FTMS 0 0 0 5971 143454.6875 0.5434050486816016 2 -0.056461334228515625 1 Unmodified _SALEKEEAL_ ENSG00000107960|ENST00000224950|STN1 45.739877483867886 0.03899552410870734 2 {[SA]|[TG]}{I|L}E{[VA]|[{I|L}G]}ESA{I|L} 10 3 + 42.858 0 0 4.3357 4.3357 81.923 0 0 0 5.898255349109505 29.346237737811762 5.898255349109505 1.249387366082999 0 1.7302046884880937 0 0.3494850021680094 0 {[SA]|[TG]}{I|L}E{[VA]|[{I|L}G]}ESA{I|L};{[SA]|[TG]}{I|L}E{[VA]|[{I|L}G]}SEA{I|L};{[SA]|[TG]}{I|L}E{I|L}{I|L}D[QT];{[SA]|[TG]}{I|L}{[VA]|[{I|L}G]}EESA{I|L};{[SA]|[TG]}{I|L}{[VA]|[{I|L}G]}ESEA{I|L};{[QN]|[E{I|L}]|[KN]}[KA]EESA{I|L};{[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}{[VA]|[{I|L}G]}ESA{I|L};[{M(Oxidation (M))|F}V][KP]{NN|[MP]|[D{I|L}]|[EV]}SA{I|L};{[QN]|[E{I|L}]|[KN]}[KA]ESEA{I|L};{[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}{[VA]|[{I|L}G]}SEA{I|L} 4.3357;4.2093;3.4499;3.4273;3.3009;1.2806;1.2575;1.2503;1.1542;1.1311 -;-;-;-;-;-;-;-;-;- 263 NaN NaN 124308.8 NaN 3799 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5973 36.023 NaN 207710 35 0 37668 0.261 + 2614 DVAEVDTVR 9 55 502.25658833397523 1002.4986237347505 2 502.2564392089844 MULTI HCD FTMS 0 0 0 5971 101255.109375 0.4952560608296603 3 -0.063873291015625 2 Unmodified _DVAEVDTVR_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 57.24910588100465 0.021429789259086996 2 [DV]AEVDTVR 9 0 + 88.655 0 0 8.8434 8.8434 97.103 0 0 0 84.21835643169331 12.587418566968154 12.587418566968154 33.70419729680272 0 2.305462187404089 2 0.6549471895720985 0 + + [DV]AEVDTVR;[DV]AEVQQ[KS];[DV][VG]EETVR;[DV]A[VS][NP]S[KS];[DV]A[TP][QA]S[KS];{[CP]|[EA]}[DV]VQQ[KS] 8.8434;5.4814;4.1091;2.3076;2.1696;0.61851 +;-;-;-;-;- + 239 + NaN NaN 117720.4 NaN 3800 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5974 36.027 NaN 44327 35 0 4691.1 0.261 + 13870 KYQAECSQF 9 30 552.2452345424392 1102.4759161516783 2 552.2451171875 MULTI HCD FTMS 0 0 0 5971 15426.15625 0.3012244564209211 10 -0.25943756103515625 3 Unmodified _KYQAECSQF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 4.897010918128616 0.31389406404703984 2 C{[QS]|[NT]}{M(Oxidation (M))|F} 4 5 18.188 0 0 1.6497 0 0 619.2964344709 0 619.2964344709 0 18.187587626244124 0 0 0 0.5 0 0 0 + C{[QS]|[NT]}{M(Oxidation (M))|F} 1.6497 + + 5 NaN NaN 92959.1 NaN 3801 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5975 36.03 NaN 15757 35 0 2653 0.261 + -1 WPGLQCTEQE 10 16 624.2707689584703 NaN 0 624.2716674804688 PEAK HCD FTMS 0 0 0 5971 5823.3359375 0.5459533723224865 1 -0.026607513427734375 4 Carbamidomethyl (C) _WPGLQC(Carbamidomethyl (C))TEQE_ REV__ENST00000532353.1_1_6:111919081-111919366:+|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92574.1 NaN 3802 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5976 36.034 NaN 31372 35 0 4655.6 0.263 + 8746 HHLHCLVV 8 27 479.257364537449 NaN 0 479.2575378417969 PEAK HCD FTMS 0 0 0 5971 6721.51416015625 0.6200041616878798 -3 0.08785247802734375 5 Unmodified _HHLHCLVV_ REV__ENSG00000188906|ENST00000298910|LRRK2;REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF;REV__LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83236.1 NaN 3803 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5977 36.037 NaN 15911 35 0 5455.4 0.261 + 2143 DGEQDNYSYY 10 14 627.2335759933806 NaN 0 627.233642578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _DGEQDNYSYY_ tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92533.6 NaN 3804 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5978 36.04 NaN 14300 35 0 3641.5 0.261 + 23805 RRQRARYRP 9 16 629.8715209960938 NaN 0 629.8715209960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RRQRARYRP_ REV__ENSG00000187486|ENST00000339994|KCNJ11 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88769.2 NaN 3805 2171 5971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5980 36.046 NaN 346170 35 0 38258 0.327 + 94 ADKMDMSL 8 49 492.70420038823573 983.3938478432715 2 492.7044982910156 MULTI HCD FTMS 0 0 0 5979 221175.078125 0.8929676300610123 1 -0.02985382080078125 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 86.33184430468982 0.018358314069074518 2 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 62.044 0 0 6.3092 0 0 228.07420546699376 0 228.07420546699376 0 32.56334623906618 0 0 0 1.6549471895720984 0 0.7614393726401688 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6.3092 + + 60 NaN NaN 156992.3 NaN 3806 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5981 36.05 NaN 458210 35 0 36920 0.261 + 27893 TEEDLDLVTL 10 56 574.2907273567691 1146.5669017803382 2 574.2908935546875 MULTI HCD FTMS 0 0 0 5979 206296.625 0.050267417043394186 20 -0.4757499694824219 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 30.636539890814138 0.2266618088935899 2 HEVT{I|L} 5 6 55.433 0 0 4.8347 0 0 549.2540150373062 0 549.2540150373062 0 29.51544993495972 0 0 0 1 0 1.3494850021680094 0 HEVT{I|L} 4.8347 - 134 NaN NaN 153169.5 NaN 3807 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5982 36.054 NaN 373040 35 0 54844 0.264 -1 LYAYKMLMAK 10 62 416.5574314578114 NaN 0 416.5487976074219 PEAK HCD FTMS 0 0 0 5979 3240.212890625 0.5825151425534434 -1 0.026607513427734375 3 Oxidation (M) _LYAYKM(Oxidation (M))LMAK_ ENSG00000149488|ENST00000358864|TMC2;nc|ENSG00000149488|Q8TDI7-3|TMC2 3.876331618118854 0.3368666864104206 2 {M(Oxidation (M))|F} 1 -1 2.2185 0 0 0.26693 0 0 434.9062009509759 246.13242517642814 681.0386261274041 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.26693 + + 1 + NaN NaN 140699.3 NaN 3808 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5983 36.057 NaN 164780 35 0 17610 0.261 + 1589 AYVHTMIANT 10 46 560.7765569343028 NaN 0 560.7659912109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AYVHTMIANT_ ENSG00000197674|ENST00000641159|OR51C1P 7.910154910731844 0.33341429274560913 2 SVHW 4 8 25.433 0 0 2.2717 0 0 147.0922029638577 460.19831262760005 607.2905155914577 0 0 0 0 0 0 0 0.5 0 SVHW 2.2717 - 138 + NaN NaN 105087.8 NaN 3809 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5984 36.06 NaN 60404 35 0 6490.4 0.261 -1 LPQHPDVEM 9 30 541.2515239173474 1080.4884949014947 2 541.2528076171875 MULTI HCD FTMS 0 0 0 5979 38670.32421875 0.7628732902187323 8 -0.19623565673828125 5 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 12.240655878213236 0.2545997876781172 2 E{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.2931 0 0 786.4033070294937 0 786.4033070294937 0 23.51723712831241 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F} 2.2931 + + 5 NaN NaN 88786.5 NaN 3810 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5985 36.064 NaN 67099 35 0 9372.6 0.261 -1 HSLPQEPVM 9 23 527.2553496620409 1052.4961463908817 2 527.255126953125 MULTI HCD FTMS 0 0 0 5979 21373.01953125 0.18045647449569416 25 -0.59832763671875 6 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 20.41453444215458 0.18397929046831515 2 E[VP]{M(Oxidation (M))|F} 4 -1 30.445 0 0 2.8927 0 0 562.2882557599625 0 562.2882557599625 0 19.21322788818852 0 0 0 1.4247425010840047 0 0 0 E[VP]{M(Oxidation (M))|F} 2.8927 + + 18 NaN NaN 92180.3 NaN 3811 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5986 36.067 NaN 70427 35 0 13911 0.261 + -1 KFCKKFQL 8 30 549.8125658291411 NaN 0 549.8016357421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _KFC(Carbamidomethyl (C))KKFQL_ REV__ZNF479|p.C129F|1|0.24|ENSG00000185177|chr7:57121029-57121029|C/A|missense_variant 2.302733041254933 0.38822285293237185 2 V{M(Oxidation (M))|F}{I|L} 3 -1 16.198 0 0 1.4757 0 0 128.11696250760752 607.2475069635374 735.364469471145 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F}{I|L} 1.4757 - 6 + NaN NaN 94386.3 NaN 3812 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5987 36.07 NaN 53082 35 0 11952 0.261 + 15970 LPQGKEPGL 9 31 469.76892899643127 937.5233050596626 2 469.76904296875 MULTI HCD FTMS 0 0 0 5979 12715.853515625 0.46528951430776705 -3 0.09128952026367188 8 Unmodified _LPQGKEPGL_ ENSG00000157212|ENST00000404141|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101783.8 NaN 3813 2172 5979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5989 36.075 NaN 159030 35 0 9868.7 0.326 + 757 ASDCPGESTL 10 51 490.2054947382468 978.3964365432936 2 490.20550537109375 MULTI HCD FTMS 0 0 0 5988 48643.66796875 0.8979749523061773 1 -0.007411956787109375 1 Unmodified _ASDCPGESTL_ nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B 22.736283301280096 0.29844449404982915 2 APAT{I|L} 5 6 31.995 0 0 3.2701 0 0 507.1277425509092 0 507.1277425509092 0 11.025684359364405 0 0 0 0.8494850021680094 0 0.7302046884880937 0 APAT{I|L} 3.2701 - 132 + NaN NaN 110923.6 NaN 3814 2173 5988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5991 36.083 NaN 919370 35 0 306210 0.327 + 17601 LYWSHPRKF 9 61 411.88910181048436 1232.645476031653 3 411.8891296386719 MULTI HCD FTMS 0 0 0 5990 305938.4375 0.8788897259811576 2 -0.056095123291015625 1 Unmodified _LYWSHPRKF_ ENSG00000213741|ENST00000245458|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF;nc|ENSG00000213741|P62273-2|RPS29 34.93206674587334 0.08860942999206235 2 {I|L}YWSH 5 4 66.454 0 0 5.3911 0 0 0 543.3047890173267 543.3047890173267 42.42992819099939 0 0 0 0 0.8494850021680094 2 0 0 + {I|L}YWSH 5.3911 + + 86 + NaN NaN 219054.9 NaN 3815 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5992 36.087 NaN 444590 35 0 128450 0.261 + 24503 RYLEKPMEI 9 53 597.8131717482389 1193.6117905632777 2 597.8133544921875 MULTI HCD FTMS 0 0 0 5990 213473.453125 0.5046340951532333 13 -0.3323860168457031 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 51.41523569358685 0.02959097413485123 2 [YR]{I|L}EKE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 9 2 + 55.198 0 0 4.6245 4.6245 89.16 0 0 0 4.8321082505948 25.08741856696815 4.8321082505948 19.20818753952375 0 1.3807196863200843 0 0.8252574989159953 0.3807196863200844 [YR]{I|L}EKE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[YR]{I|L}EA[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EK{I|L}E[YR]{I|L};[YR]{I|L}EAE[{I|L}V]{[DS]|[MA]|[CV]|TT} 4.6245;3.0152;2.3301;2.1749 -;-;-;- 347 NaN NaN 163023.7 NaN 3816 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5993 36.091 NaN 150020 35 0 18022 0.264 -1 KYMKEKLLF 9 34 405.89844491276324 1214.6735053384898 3 405.89849853515625 MULTI HCD FTMS 0 0 0 5990 90286.6640625 0.6573705729975461 10 -0.2528038024902344 3 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ ENST00000453153.6_2_2:170428583-170430242:-|nuORF 6.630372943996041 0.3007538891620783 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7484 0 0 1049.5945543880975 0 1049.5945543880975 0 21.237125054200234 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7484 + + 3 + NaN NaN 122819.1 NaN 3817 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5994 36.094 NaN 117970 35 0 12129 0.261 + 25615 SGFSSVSVSR 10 40 506.7565623218053 1011.4985717104106 2 506.7567138671875 MULTI HCD FTMS 0 0 0 5990 32806.296875 0.5124674567398735 -2 0.037265777587890625 4 Unmodified _SGFSSVSVSR_ CON__P02538;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 31.635753872319068 0.2179907440432224 2 [SG]{M(Oxidation (M))|F}SSVSV{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 57.642 0 0 5.6986 5.6986 92.836 0 0 0 57.641661179897014 4.884381005764311 4.884381005764311 57.641661179897014 0 1.3996498648046138 0 0 0 + + [SG]{M(Oxidation (M))|F}SSVSV{[QD]|[EN]|[WG]|[KD]|[RS]} 5.6986 + + 54 + NaN NaN 104736.4 NaN 3818 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5995 36.097 NaN 70952 35 0 17627 0.261 + -1 KNYPVCCPL 9 30 547.2619815523349 1092.5094101714697 2 547.2621459960938 MULTI HCD FTMS 0 0 0 5990 25726.73828125 0.4671593014391827 6 -0.15896987915039062 5 Carbamidomethyl (C) _KNYPVC(Carbamidomethyl (C))CPL_ REV__ENSG00000132554|ENST00000360863|RGS22;REV__ENST00000520923.5_1_8:101051146-101092499:-|nuORF;REV__nc|ENSG00000132554|Q8NE09-2|RGS22;REV__nc|ENSG00000132554|Q8NE09-3|RGS22 4.3292370932331545 0.3181982124262546 2 P{I|L} 2 -1 25.969 0 0 2.377 0 0 864.3628112876058 0 864.3628112876058 0 25.969100130080562 0 0 0 0.5 0 0 0 P{I|L} 2.377 + + 2 NaN NaN 91802.7 NaN 3819 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5996 36.101 NaN 129390 35 0 11884 0.261 + 7388 FVHQGETEL 9 45 530.2590452547814 1058.5035375763628 2 530.259033203125 MULTI HCD FTMS 0 0 0 5990 27878.990234375 0.12433716660684145 -5 0.1285552978515625 6 Unmodified _FVHQGETEL_ ENSG00000105447|ENST00000253237|GRWD1 31.26834338654808 0.10542797264966089 2 QWTE{I|L} 5 5 49.993 0 0 4.723 0 0 383.1954518048844 0 383.1954518048844 0 43.53917193908117 0 0 0 0.8807196863200843 0 0.7742275032520141 0 QWTE{I|L} 4.723 - 52 NaN NaN 119497.8 NaN 3820 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5997 36.104 NaN 60434 35 0 4635.5 0.261 + 21986 QETSFTKEAY 10 26 602.2801197630226 1202.5456865928452 2 602.2803955078125 MULTI HCD FTMS 0 0 0 5990 26310.296875 0.19156650013168455 -4 0.09866714477539062 7 Unmodified _QETSFTKEAY_ ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;TPT1-KRT17|1|fusion 23.789781309258295 0.28859042913526417 2 E{[MS]|[{M(Oxidation (M))|F}A]}K{[MS]|[{M(Oxidation (M))|F}A]}Y 7 5 26.699 0 0 2.2202 0 0 328.1737538068375 0 328.1737538068375 0 14.023269708257898 0 0 0 0.5 0 0.8494850021680094 0.5 E{[MS]|[{M(Oxidation (M))|F}A]}K{[MS]|[{M(Oxidation (M))|F}A]}Y 2.2202 - 33 NaN NaN 96599 NaN 3821 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5998 36.107 NaN 73397 35 0 9982.4 0.261 + 16140 LPTSEESRL 9 33 516.2717796916958 1030.5290064501914 2 516.2723999023438 MULTI HCD FTMS 0 0 0 5990 20381.873046875 1 0 0 8 Unmodified _LPTSEESRL_ ENSG00000180357|ENST00000326648|ZNF609 7.101721422024254 0.29718071671418667 2 {I|L}PTS 4 5 27.423 0 0 2.661 0 0 0 629.2872408502561 629.2872408502561 27.422750325201406 0 0 0 0 0 0 0 0 + {I|L}PTS 2.661 + + 9 + NaN NaN 105122.4 NaN 3822 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 5999 36.11 NaN 73759 35 0 13880 0.261 + 14906 LLAAAELGPS 10 30 471.27071483645744 NaN 0 471.2560119628906 PEAK HCD FTMS 0 0 0 5990 7933.60888671875 1 0 0 9 Unmodified _LLAAAELGPS_ REV__ENST00000502380.1_1_5:176936187-176937359:-|nuORF;REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF;REV__nc|ENSG00000146094|Q7L591|DOK3 6.723162845929126 0.3344301934401713 2 DA 2 -1 6.4537 0 0 0.68617 0 0 386.25613806959615 365.1937484827142 751.4498865523103 0 0 0 0 0 0 0 0 0 DA 0.68617 - 11 + NaN NaN 96240.5 NaN 3823 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6000 36.114 NaN 31650 35 0 7751.3 0.261 -1 CHWALMAL 8 23 509.2365495488142 1016.4585461644284 2 509.73724365234375 MULTI HCD FTMS 0 0 0 5990 5723.17724609375 0.5592653239540544 5 -0.13906478881835938 10 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))HWALM(Oxidation (M))AL_ ENST00000429751.6_1_16:15155497-15155548:-|nuORF 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83857.3 NaN 3824 2174 5990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6002 36.119 NaN 91288 35 0 8369.6 0.326 + -1 LVYMKCVTL 9 32 563.8037939542671 1125.5930349753341 2 564.7938232421875 MULTI HCD FTMS 0 0 0 6001 2863.398681640625 0.13152377365166523 8 -0.2091522216796875 1 Carbamidomethyl (C) _LVYMKC(Carbamidomethyl (C))VTL_ REV__C7|p.H746Y|1|0.22|ENSG00000112936|chr5:40979795-40979795|C/T|missense_variant 3.5964929083625545 0.32375295897743744 2 PV 2 -1 10.969 0 0 0.97452 0 0 135.08127063890464 791.3677375965899 926.4490082354946 0 0 0 0 0 0 0 0 0 PV 0.97452 - 9 + NaN NaN 95864.9 NaN 3825 2175 6001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6003 36.123 NaN 38978 35 0 4430.9 0.261 -1 YVHMVTHF 8 22 525.2473454605481 1048.4801379878961 2 525.2471923828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 9.347437153973935 0.5250182646323369 2 P{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.3631 0 0 786.3472632145447 0 786.3472632145447 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 P{M(Oxidation (M))|F} 2.3631 - 3 NaN NaN 86310.7 NaN 3826 2175 6001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6004 36.127 NaN 72485 35 0 8311 0.262 + 20228 NYLNVKWEDQ 10 31 436.87923803806666 NaN 0 436.8796081542969 PEAK HCD FTMS 0 0 0 6001 9950.4794921875 0.40111942545938456 105 -2.748523712158203 3 Unmodified _NYLNVKWEDQ_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 1.7422754331352037 0.33869314273211465 2 {I|L} 1 -1 3.9794 0 0 0.45649 0 0 481.5520724122677 274.08307825260005 755.6351506648678 0 0 0 0 0 0 0 0 0 {I|L} 0.45649 + + 1 + NaN NaN 93288.4 NaN 3827 2175 6001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6005 36.13 NaN 19825 35 0 4953.1 0.261 -1 KYMETIEKL 9 17 585.8071887228189 1169.5998245124376 2 585.8070678710938 MULTI HCD FTMS 0 0 0 6001 10120.328125 0.35945683364776043 10 -0.25272369384765625 4 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion;PPP1R21-GTF2A1L|3|fusion 2.9952420565917617 0.3283108881486655 2 E 1 -1 6.9897 0 0 0.59761 0 0 259.1890711938814 778.3451021783811 1037.5341733722626 0 0 0 0 0 0 0 0 0 E 0.59761 + + 1 + NaN NaN 92765.8 NaN 3828 2175 6001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6006 36.134 NaN 15783 35 0 3204.8 0.261 + 34830 YRKLADKLE 9 15 568.3272807225773 1134.6400085119544 2 568.3275756835938 MULTI HCD FTMS 0 0 0 6001 2865.329345703125 0.2931515464330564 1 -0.01993560791015625 5 Unmodified _YRKLADKLE_ REV__ENSG00000101557|ENST00000261601|USP14;REV__nc|ENSG00000101557|P54578-2|USP14;REV__nc|ENSG00000101557|P54578-3|USP14 1.4819007175156935 0.3397831423917744 2 K{[QN]|[E{I|L}]|[KN]} 3 -1 10.458 0 0 0.92166 0 0 746.4084339826187 0 746.4084339826187 0 10.45757490560675 0 0 0 0 0 0 0 K{[QN]|[E{I|L}]|[KN]} 0.92166 + + 1 NaN NaN 88735.6 NaN 3829 2175 6001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6008 36.139 NaN 515060 35 0 116770 0.327 + 15387 LPDGDHDL 8 61 441.20381893303284 880.3930849328657 2 441.2037048339844 MULTI HCD FTMS 0 0 0 6007 253639.15625 0.3285911989273853 7 -0.18921661376953125 1 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 67.34385681178166 0.03276080048072826 2 {I|L}PD[DG]HD{I|L} 8 0 + 66.693 0 0 7.5753 7.5753 95.754 0 0 0 45.49471895720984 7.395775165767873 7.395775165767873 45.918504938608606 0 1.5044321917401078 1.6989700043360187 1.0044321917401078 0 + + {I|L}PD[DG]HD{I|L};[{I|L}P]EE[HQ]E 7.5753;2.3596 +;- + 120 + NaN NaN 155233 NaN 3830 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6009 36.143 NaN 126240 35 0 13219 0.261 -1 0 43 482.2300282871123 962.4455036410246 2 482.74591064453125 MULTI HCD FTMS 0 0 0 6007 5366.0283203125 0.5843528484049921 1 -0.0331573486328125 2 NaN NaN 2 T{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.1787 0 0 696.3521636525466 0 696.3521636525466 0 6.276362525516532 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 2.1787 - 50 + NaN NaN 109585 NaN 3831 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6010 36.147 NaN 119100 35 0 28114 0.261 -1 ECAEEKIP 8 32 488.22642589325227 974.4382988533046 2 488.2265319824219 MULTI HCD FTMS 0 0 0 6007 39117.08203125 0.7719201754993849 4 -0.102874755859375 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))AEEKIP_ ENSG00000198911|ENST00000361204|SREBF2;ENST00000424354.5_1_22:42276758-42295397:+|nuORF 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 115000.7 NaN 3832 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6011 36.15 NaN 103670 35 0 17252 0.261 -1 MPVHAAVQM 9 43 500.24110746886186 998.4676620045237 2 500.2411193847656 MULTI HCD FTMS 0 0 0 6007 41609.0234375 0.930805329054086 -3 0.063507080078125 4 Oxidation (M) _M(Oxidation (M))PVHAAVQM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 16.942295170755138 0.21397866736869717 2 VQM 3 -1 34.253 0 0 3.4305 0 0 622.29008681465 0 622.29008681465 0 31.743565832589265 0 0 0 0.805462187404089 0 0 0 VQM 3.4305 + + 53 NaN NaN 97857.8 NaN 3833 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6012 36.154 NaN 75766 35 0 5230.2 0.261 + -1 PTKGLFITM 9 42 512.2831396022018 NaN 0 512.2728881835938 PEAK HCD FTMS 0 0 0 6007 5530.2373046875 0.7243477470054107 -4 0.09336090087890625 5 Oxidation (M) _PTKGLFITM(Oxidation (M))_ REV__ADGRG4|p.S1264F|1|0.29|ENSG00000156920|chrX:136347497-136347497|C/T|missense_variant 22.736283301280096 0.1690317064107932 2 {I|L}T 2 -1 13.711 0 0 1.3409 0 0 643.3738831088974 162.0228212945922 805.3967044034896 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}T 1.3409 + + 16 + NaN NaN 100799 NaN 3834 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6013 36.157 NaN 103550 35 0 23155 0.261 + 27761 TATLHEPIM 9 33 514.7576965287152 1027.5008401242303 2 514.7579956054688 MULTI HCD FTMS 0 0 0 6007 50815.7890625 0.3234060949948887 -6 0.15476226806640625 6 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 48.345845343767074 0.03388484103555672 2 EP{I|L}{M(Oxidation (M))|F} 4 5 34.935 0 0 3.4 0 0 523.2753163068375 0 523.2753163068375 0 19.487066132943408 0 0 0 1.3182503180159344 0 0.7059771852360797 0 + EP{I|L}{M(Oxidation (M))|F} 3.4 + + 45 NaN NaN 109974.2 NaN 3835 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6014 36.16 NaN 48332 35 0 9160.6 0.261 + 13912 KYQEVTNNL 9 25 554.7850759152151 1107.55559889723 2 554.7854614257812 MULTI HCD FTMS 0 0 0 6007 26679.23828125 0.014856373126821252 29 -0.6909751892089844 7 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 4.897010918128616 0.31389406404703984 2 T{NN|[MP]|[D{I|L}]|[EV]}{I|L} 4 5 21.198 0 0 1.9139 0 0 647.3278790700273 0 647.3278790700273 0 15.713337517843655 0 0 0 0.5 0 0 0 + T{NN|[MP]|[D{I|L}]|[EV]}{I|L} 1.9139 + + 7 NaN NaN 84609 NaN 3836 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6015 36.164 NaN 66255 35 0 9013.5 0.263 + 20267 NYLQLLVHPNP 11 26 436.5749771423581 1306.7031020272743 3 436.5748596191406 MULTI HCD FTMS 0 0 0 6007 13969.8271484375 0.8069229713098502 1 -0.0331573486328125 8 Unmodified _NYLQLLVHPNP_ ENSG00000125755|ENST00000245934|SYMPK 6.623454094837244 0.3898724468670146 2 [YN]{I|L} 3 8 38.2 0 0 2.9234 0 0 0 913.4899065558327 913.4899065558327 38.19984993812689 0 0 0 0 0.7742275032520141 2 0 0 + [YN]{I|L} 2.9234 + + 7 + NaN NaN 90335.8 NaN 3837 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6016 36.167 NaN 21435 35 0 3568 0.261 + 17603 LYWSHPRKF 9 13 617.3303696813751 1232.6461864295502 2 617.3294067382812 MULTI HCD FTMS 0 0 0 6007 3439.644287109375 0.16307801159224836 6 -0.15275955200195312 9 Unmodified _LYWSHPRKF_ ENSG00000213741|ENST00000245458|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF;nc|ENSG00000213741|P62273-2|RPS29 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94440.6 NaN 3838 2176 6007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6018 36.172 NaN 340140 35 0 55906 0.327 -1 QAFGEKITM 9 39 520.7577408432509 1039.5009287533017 2 520.757568359375 MULTI HCD FTMS 0 0 0 6017 69588.4765625 0.9371440926146966 1 -0.013263702392578125 1 Oxidation (M) _QAFGEKITM(Oxidation (M))_ ENSG00000137575|ENST00000260130|SDCBP;ENST00000424643.3_1_8:70855645-70855750:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 11.494710602746466 0.2610445893512368 2 [QA]{M(Oxidation (M))|F}GE[K{I|L}]T{M(Oxidation (M))|F} 9 -1 + 32.342 0 0 3.1113 3.1113 88.614 0 0 0 13.758330990418564 12.508943624335565 12.508943624335565 32.34182484690081 0 0 0 0 0 [QA]{M(Oxidation (M))|F}GE[K{I|L}]T{M(Oxidation (M))|F} 3.1113 + + 40 + NaN NaN 132338.5 NaN 3839 2177 6017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6019 36.177 NaN 33243 35 0 3682.5 0.261 + 13871 KYQAECSQF 9 24 552.2452345424392 1102.4759161516783 2 552.2447509765625 MULTI HCD FTMS 0 0 0 6017 14209.720703125 0.27747128483104383 16 -0.3624534606933594 2 Unmodified _KYQAECSQF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 2.9952420565917617 0.3283108881486655 2 C{[QS]|[NT]}{M(Oxidation (M))|F} 4 5 16.198 0 0 1.4692 0 0 619.2965565412125 0 619.2965565412125 0 10.713337517843655 0 0 0 0 0 0 0 + C{[QS]|[NT]}{M(Oxidation (M))|F} 1.4692 + + 4 NaN NaN 81981.1 NaN 3840 2177 6017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6020 36.18 NaN 13785 35 0 3246.3 0.261 + 24302 RYFWGWLN 8 16 571.2825599074016 NaN 0 571.2950439453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RYFWGWLN_ ENSG00000125375|ENST00000557421|DMAC2L;ENST00000554438.5_1_14:50779073-50792438:+|nuORF;ENST00000555939.5_1_14:50779073-50791268:+|nuORF;ENST00000557421.5_1_14:50779073-50792346:+|nuORF;nc|ENSG00000125375|Q99766-2|DMAC2L;nc|ENSG00000125375|Q99766-3|DMAC2L 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90604.1 NaN 3841 2177 6017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6022 36.185 NaN 298080 35 0 26631 0.327 + 27894 TEEDLDLVTL 10 42 574.2907273567691 1146.5669017803382 2 574.291015625 MULTI HCD FTMS 0 0 0 6021 128166.9375 0.031229889962994486 26 -0.6180381774902344 1 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 30.636539890814138 0.2266618088935899 2 HEVT{I|L} 5 6 61.498 0 0 5.3637 0 0 549.255662986525 0 549.255662986525 0 32.57007180900061 0 0 0 1.305462187404089 0 1.3494850021680094 0 HEVT{I|L} 5.3637 - 145 NaN NaN 133335.6 NaN 3842 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6023 36.19 NaN 152260 35 0 21660 0.261 -1 RYMEVSGNL 9 40 542.7569143247312 1083.4992757162622 2 542.7584838867188 MULTI HCD FTMS 0 0 0 6021 79178.859375 0.7055803952001652 -2 0.046421051025390625 2 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 17.44264345198275 0.2096557692338702 2 EVSGN{I|L} 6 -1 46.771 0 0 4.3167 0 0 466.19822890449376 0 466.19822890449376 0 46.77108148272637 0 0 0 0.5 0 0 0 EVSGN{I|L} 4.3167 + + 38 NaN NaN 94442.2 NaN 3843 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6024 36.193 NaN 157740 35 0 20428 0.261 + 22458 QQREEFQR 8 41 560.7775473873342 NaN 0 560.7659301757812 PEAK HCD FTMS 0 0 0 6021 2809.08642578125 1 0 0 3 Unmodified _QQREEFQR_ REV__ENSG00000178104|ENST00000695795|PDE4DIP;REV__ENST00000477941.2_1_1:144952199-144955307:-|nuORF;REV__ENST00000533259.1_1_1:144952356-145039598:-|nuORF;REV__nc|ENSG00000178104|Q5VU43-10|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-11|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-12|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-7|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-8|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-9|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43|PDE4DIP;REV__PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant 7.910154910731844 0.38822285293237185 2 SVHW 4 -1 23.928 0 0 2.1373 0 0 147.09138455242527 460.19687830142817 607.2882628538534 0 0 0 0 0 0 0 0.5 0 SVHW 2.1373 - 159 + NaN NaN 123614.2 NaN 3844 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6025 36.197 NaN 90587 35 0 10055 0.261 -1 ADKMDMSL 8 36 492.70420038823573 983.3938478432715 2 492.7044982910156 MULTI HCD FTMS 0 0 0 6021 58920.19140625 0.2378831472732425 7 -0.18636703491210938 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 20.41453444215458 0.4435908194320988 2 {M(Oxidation (M))|F}S{I|L} 3 -1 33.188 0 0 3.3748 0 0 618.2301502912125 0 618.2301502912125 0 24.75895023531386 0 0 0 0.5 0 0.3494850021680094 0 {M(Oxidation (M))|F}S{I|L} 3.3748 + + 19 NaN NaN 92831.8 NaN 3845 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6026 36.2 NaN 63079 35 0 17364 0.261 + 15852 LPKNNPPTI 9 27 497.2899773645398 992.5654017958797 2 497.28997802734375 MULTI HCD FTMS 0 0 0 6021 34596.9375 1 0 0 5 Unmodified _LPKNNPPTI_ ENSG00000100284|ENST00000449058|TOM1;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;nc|ENSG00000100284|O60784-2|TOM1;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1 11.494710602746466 0.2610445893512368 2 {I|L}P 2 7 20.969 0 0 2.1126 0 0 0 779.4011934869749 779.4011934869749 8.979400086720375 0 0 0 0 0 0 0 0 + {I|L}P 2.1126 + + 2 + NaN NaN 96639.7 NaN 3846 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6027 36.203 NaN 147940 35 0 20113 0.261 -1 HPVLKEMEVQ 10 33 613.3160730684439 1224.6175932036876 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6021 44204.32421875 0.14981533073921718 -5 0.10992813110351562 6 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 8.155526934196011 0.43213520406898465 2 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.414106518679 888.414106518679 16.505149978319906 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 13 + NaN NaN 103234 NaN 3847 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6028 36.207 NaN 94988 35 0 9200.9 0.261 + 6003 FPDRIDECP 9 35 546.245054301141 1090.4755556690818 2 546.2451171875 MULTI HCD FTMS 0 0 0 6021 16648.083984375 0.3512674910116636 -21 0.53936767578125 7 Unmodified _FPDRIDECP_ nc|ENSG00000061938|Q07912-2|TNK2 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}[DP]REEV{[CP]|[EA]} 9 3 + 22.086 0 0 2.0254 2.0254 87.483 0 0 0 12.622112082903246 7.147642715192507 7.147642715192507 22.086062234663903 0 0.5 0 0.3494850021680094 0 {M(Oxidation (M))|F}[DP]REEV{[CP]|[EA]} 2.0254 - 47 + NaN NaN 97452.9 NaN 3848 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6029 36.21 NaN 36294 35 0 11910 0.261 -1 0 16 474.0637806884038 NaN 0 474.06353759765625 PEAK HCD FTMS 0 0 0 6021 13012.6806640625 0.49957233560621195 70 -1.8360633850097656 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92351.4 NaN 3849 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6030 36.213 NaN 82249 35 0 19183 0.261 + -1 DRQFMRVW 8 33 577.2822470489806 1152.549941164761 2 577.7831420898438 MULTI HCD FTMS 0 0 0 6021 7198.54248046875 0.46533256065215806 -3 0.06635665893554688 9 Oxidation (M) _DRQFM(Oxidation (M))RVW_ REV__ENSG00000184471|ENST00000328449|C1QTNF8 4.75600775471527 0.5349361699807423 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8194 0 0 888.4002552716812 0 888.4002552716812 0 16.53212513775344 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.8194 - 10 NaN NaN 96936.5 NaN 3850 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6031 36.217 NaN 29779 35 0 5403.6 0.261 -1 FDYLYCCR 8 25 570.2378785946607 1138.4612042561214 2 570.2384033203125 MULTI HCD FTMS 0 0 0 6021 7520.72607421875 0.7854594671942756 1 -0.036548614501953125 10 Carbamidomethyl (C) _FDYLYC(Carbamidomethyl (C))CR_ AHCYL2|p.N370Y|1|0.69|ENSG00000158467|chr7:129405179-129405179|A/T|missense_variant 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91188.9 NaN 3851 2178 6021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6033 36.222 NaN 44682 35 0 9023.4 0.327 + 20746 PGEGGGRGKKR 11 16 549.8119079679607 NaN 0 549.80078125 PEAK HCD FTMS 0 0 0 6032 3984.8056640625 1 0 0 1 Unmodified _PGEGGGRGKKR_ REV__ENST00000348160.8_1_4:26322496-26387983:+|nuORF;REV__ENST00000355476.7_2_4:26322496-26364082:+|nuORF 0.26902006276349055 0.3413570110244116 2 V{M(Oxidation (M))|F}{I|L} 3 -1 16.198 0 0 1.4757 0 0 128.12071517835597 607.2479648747063 735.3686800530622 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F}{I|L} 1.4757 - 6 + NaN NaN 84550.8 NaN 3852 2179 6032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6034 36.226 NaN 51448 35 0 7791.3 0.261 -1 HSLPQEPVM 9 27 527.2553496620409 1052.4961463908817 2 527.2559204101562 MULTI HCD FTMS 0 0 0 6032 11017.40234375 0.09302202630502371 32 -0.7564888000488281 2 Oxidation (M) _HSLPQEPVM(Oxidation (M))_ ENSG00000163558|ENST00000295797|PRKCI 13.042465956692817 0.2476723265019929 2 {M(Oxidation (M))|F}[VP]{M(Oxidation (M))|F} 4 -1 23.188 0 0 2.2031 0 0 544.2717028867786 0 544.2717028867786 0 16.197887582883936 0 0 0 1 0 0 0 {M(Oxidation (M))|F}[VP]{M(Oxidation (M))|F} 2.2031 - 6 + NaN NaN 97453.6 NaN 3853 2179 6032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6035 36.23 NaN 32110 35 0 4863 0.261 + 21069 PLYMAPLP 8 29 451.2478291448759 900.4811053565518 2 451.24713134765625 MULTI HCD FTMS 0 0 0 6032 6553.2685546875 0.4102080416595579 3 -0.06978988647460938 3 Unmodified _PLYMAPLP_ REV__ENST00000397501.5_1_8:27316032-27316239:+|nuORF 6.354104778181461 0.5325651638111438 2 GN 2 -1 7.0783 0 0 0.78606 0 0 325.1987700067455 401.1948641412719 726.3936341480174 0 0 0 0 0 0 0 0 0 GN 0.78606 - 5 + NaN NaN 91494.4 NaN 3854 2179 6032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6036 36.233 NaN 33484 35 0 4713.7 0.261 -1 AMNMLHELQ 9 23 551.7548964084839 1101.4952398837677 2 551.7540893554688 MULTI HCD FTMS 0 0 0 6032 7271.0908203125 0.08336482169711211 34 -0.8160896301269531 4 Oxidation (M) _AMNM(Oxidation (M))LHELQ_ nc|ENSG00000226807|Q6ZUA9|MROH5 1.4819007175156935 0.3397831423917744 2 EG 2 -1 7.0783 0 0 0.64261 0 0 576.2396989675552 336.16034876041255 912.4000477279678 0 0 0 0 0 0 0 0 0 EG 0.64261 - 4 + NaN NaN 91947.5 NaN 3855 2179 6032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6037 36.237 NaN 17053 35 0 4622.1 0.261 + 2144 DGEQDNYSYY 10 14 627.2335759933806 NaN 0 627.2334594726562 PEAK HCD FTMS 0 0 0 6032 5747.8857421875 0.5438424516506256 3 -0.06978988647460938 5 Unmodified _DGEQDNYSYY_ tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84207.2 NaN 3856 2179 6032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6039 36.242 NaN 373720 35 0 38548 0.327 + 7389 FVHQGETEL 9 65 530.2590452547814 1058.5035375763628 2 530.259033203125 MULTI HCD FTMS 0 0 0 6038 222240.390625 0.9911671923410905 1 -0.036594390869140625 1 Unmodified _FVHQGETEL_ ENSG00000105447|ENST00000253237|GRWD1 78.7280429016045 0.006263961847259105 2 [{M(Oxidation (M))|F}V]HD[QA]TE{I|L} 9 3 + 57.17 0 0 5.4011 5.4011 88.377 0 0 0 2.922152515121219 39.54705724461448 2.922152515121219 9.542425094393252 0 1.5994850021680094 0 0.7742275032520141 0 [{M(Oxidation (M))|F}V]HD[QA]TE{I|L};[{M(Oxidation (M))|F}V]HN{[CP]|[EA]}TE{I|L};[{M(Oxidation (M))|F}V]HN{[CP]|[EA]}MV{I|L};[{M(Oxidation (M))|F}V]HGG{[CP]|[EA]}TE{I|L};{[QN]|[E{I|L}]|[KN]}[DG][WP]TE{I|L};{[{M(Oxidation (M))|F}D]|MM}[HV][QA]TE{I|L};[{M(Oxidation (M))|F}V]H[WQ]MV{I|L};{[QN]|[E{I|L}]|[KN]}QQ{[WN]|[YH]}E{I|L};{[QN]|[E{I|L}]|[KN]}QQ[WQ]D{I|L};{I|L}{M(Oxidation (M))|F}T[QA][HV]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.4011;4.4996;3.7336;3.6296;3.6255;3.4591;3.3628;2.8966;2.8958;2.8699 -;-;-;-;-;-;-;-;-;- 779 NaN NaN 133739.7 NaN 3857 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6040 36.246 NaN 143050 35 0 12945 0.261 + 21987 QETSFTKEAY 10 49 602.2801197630226 1202.5456865928452 2 602.2802734375 MULTI HCD FTMS 0 0 0 6038 111593.328125 0.8125162330367255 2 -0.049884796142578125 2 Unmodified _QETSFTKEAY_ ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;TPT1-KRT17|1|fusion 43.981846655682396 0.11085276043338313 2 [NP]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}TK{M(Oxidation (M))|F}AY 10 4 + 51.838 0 0 4.3107 4.3107 88.93 0 0 0 4.141974908773918 21.67403451429223 4.141974908773918 20.890625187447966 0 1 0 0.7302046884880937 1.8494850021680094 [NP]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}TK{M(Oxidation (M))|F}AY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS[YK][DV]AY 4.3107;2.5735 -;- 211 NaN NaN 106902.6 NaN 3858 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6041 36.25 NaN 244550 35 0 73384 0.261 -1 RYLEKPMEI 9 40 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 6038 135977.015625 0.3214387420874253 19 -0.45511627197265625 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 22.65808497894818 0.16459551161911185 2 {I|L}{M(Oxidation (M))|F}DEKE 6 -1 56.675 0 0 4.7482 0 0 0 429.22333704166255 429.22333704166255 48.71645960868548 0 0 0 0 1 0 0.9247425010840047 0.3807196863200844 {I|L}{M(Oxidation (M))|F}DEKE 4.7482 - 130 + NaN NaN 124046.6 NaN 3859 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6042 36.253 NaN 203260 35 0 46339 0.263 + 30400 VLNLLSDAP 9 33 471.27071483645744 NaN 0 471.2559509277344 PEAK HCD FTMS 0 0 0 6038 2754 0.34713080003355484 5 -0.129913330078125 4 Unmodified _VLNLLSDAP_ REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;REV__ENSG00000076555|ENST00000338432|ACACB;REV__nc|ENSG00000076555|O00763-2|ACACB;REV__nc|ENSG00000076555|O00763-3|ACACB 12.531546534597751 0.23452071659215576 2 A{I|L}DD 4 -1 30.477 0 0 3.2405 0 0 368.2468834690456 155.08234583072502 523.3292292997706 0 0 0 0 0 0 0 1.1549471895720984 0 A{I|L}DD 3.2405 - 45 + NaN NaN 123493.6 NaN 3860 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6043 36.257 NaN 465240 35 0 38517 0.261 + 9015 HPEKLATVL 9 75 504.2977948624576 1006.5810367917152 2 504.29779052734375 MULTI HCD FTMS 0 0 0 6038 131516.734375 0.05853156291208877 -11 0.2875251770019531 5 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 36.506200033944 0.08138327636155518 2 HPE 3 6 28.188 0 0 2.8003 0 0 0 640.4022921197874 640.4022921197874 0.6022624789891751 0 0 0 0 0.5 0 0 0 + HPE 2.8003 + + 87 + NaN NaN 150317.8 NaN 3861 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6044 36.26 NaN 126710 35 0 22231 0.261 + 28992 TYDNVHQQF 9 37 576.2595325989658 1150.5045122647316 2 576.2595825195312 MULTI HCD FTMS 0 0 0 6038 64404.63671875 0.9238110761267858 -2 0.056453704833984375 6 Unmodified _TYDNVHQQF_ ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;nc|ENSG00000138639|Q8N264-3|ARHGAP24 34.93206674587334 0.08860942999206235 2 [YT]DNV 5 4 59.521 0 0 5.1734 0 0 0 555.2331655080463 555.2331655080463 47.83809673312028 0 0 0 0 1.305462187404089 2 0 0.4247425010840047 + [YT]DNV 5.1734 + + 66 + NaN NaN 104638.6 NaN 3862 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6045 36.263 NaN 291450 35 0 35548 0.264 + -1 RPPPLQIEEM 10 65 409.2130939799611 1224.6174525400834 3 409.2135009765625 MULTI HCD FTMS 0 0 0 6038 73127.9375 0.48693855404826847 -4 0.102874755859375 7 Oxidation (M) _RPPPLQIEEM(Oxidation (M))_ REV__ENSG00000197081|ENST00000356956|IGF2R 19.625955294349634 0.3275374527965692 2 E{M(Oxidation (M))|F} 2 -1 33.029 0 0 2.6971 0 0 930.5282662047629 0 930.5282662047629 0 16.104159301997 0 0 0 0.8252574989159953 0 0.3807196863200844 0 E{M(Oxidation (M))|F} 2.6971 + + 63 NaN NaN 126431.5 NaN 3863 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6046 36.267 NaN 199280 35 0 20534 0.261 + 9185 HPLEILQAQ 9 54 524.7930530084241 NaN 0 524.8110961914062 PEAK HCD FTMS 0 0 0 6038 4870.12060546875 0.7894753839230978 -2 0.056453704833984375 8 Unmodified _HPLEILQAQ_ ENSG00000169184|ENST00000302326|MN1 8.593279151180031 0.2536050107310812 2 VD 2 9 12.747 0 0 1.2168 0 0 131.0592260716448 699.3926485650999 830.4518746367446 0 0 0 0 0 0 0 0.805462187404089 0 VD 1.2168 - 33 + NaN NaN 111001.6 NaN 3864 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6047 36.27 NaN 83969 35 0 8374.1 0.263 + 12212 KKSTMLTFLF 10 44 405.89844491276324 1214.6735053384898 3 405.898193359375 MULTI HCD FTMS 0 0 0 6038 34238.97265625 0.24929144639019624 16 -0.38886260986328125 9 Unmodified _KKSTMLTFLF_ REV__ENSG00000100991|ENST00000252015|TRPC4AP;REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 9.38312468134398 0.42334543440173333 2 {I|L}{M(Oxidation (M))|F} 2 -1 22.831 0 0 1.8796 0 0 936.5074419613399 0 936.5074419613399 0 22.830918867322296 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8796 + + 3 + NaN NaN 94158.1 NaN 3865 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6048 36.273 NaN 49195 35 0 7003.1 0.261 + 569 APEEKAVTL 9 38 479.26634289194635 956.5181328506927 2 479.2664489746094 MULTI HCD FTMS 0 0 0 6038 15437.8388671875 0.8673937770471618 1 -0.036594390869140625 10 Unmodified _APEEKAVTL_ ENSG00000197077|ENST00000358431|KIAA1671 7.608950283845883 0.29333554423920943 2 APE 3 6 26.198 0 0 2.7389 0 0 0 656.3631685846311 656.3631685846311 24.604093769761874 0 0 0 0 0 0 0 0 + APE 2.7389 + + 5 + NaN NaN 102978.5 NaN 3866 2180 6038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6050 36.278 NaN 132280 35 0 14834 0.327 -1 GIMLPEFRL 9 35 546.29768783404 NaN 0 546.285400390625 PEAK HCD FTMS 0 0 0 6049 6562.02978515625 0.42602591792656586 9 -0.18965911865234375 1 Oxidation (M) _GIM(Oxidation (M))LPEFRL_ ENSG00000157999|ENST00000409061|ANKRD61 4.3292370932331545 0.2742679634796037 2 HA 2 -1 10.969 0 0 1.0058 0 0 131.12161699372217 748.3424182761436 879.4640352698657 0 0 0 0 0 0 0 0 0 HA 1.0058 - 10 + NaN NaN 102532.5 NaN 3867 2181 6049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6051 36.283 NaN 36754 35 0 4604.1 0.262 + -1 CLIELCRMR 9 18 436.87923803806666 NaN 0 436.87939453125 PEAK HCD FTMS 0 0 0 6049 13063.84375 0.5266240188129047 111 -2.8900833129882812 2 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))LIELC(Carbamidomethyl (C))RM(Oxidation (M))R_ REV__ENST00000290943.10_1_9:33547948-33547987:+|nuORF 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94956.8 NaN 3868 2181 6049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6052 36.286 NaN 37380 35 0 7974.3 0.261 + 16230 LPWEQPCGSS 10 30 552.2452345424392 1102.4759161516783 2 552.2451782226562 MULTI HCD FTMS 0 0 0 6049 9988.7275390625 0.19504852502001505 20 -0.4648780822753906 3 Unmodified _LPWEQPCGSS_ ENSG00000130881|ENST00000253193|LRP3;ENST00000590278.1_1_19:33696051-33698478:+|nuORF 1.6526216038709556 0.46655611578153744 2 E 1 9 6.9897 0 0 0.634 0 0 577.2213517979659 393.1886080377563 970.4099598357222 0 0 0 0 0 0 0 0 0 + E 0.634 + + 2 + NaN NaN 92879.4 NaN 3869 2181 6049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6054 36.292 NaN 193110 35 0 44475 0.326 + 27762 TATLHEPIM 9 35 514.7576965287152 1027.5008401242303 2 514.7577514648438 MULTI HCD FTMS 0 0 0 6053 157126.875 1 0 0 1 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 64.23631603340823 0.01165516075559909 2 [TA]T{I|L}HEP{I|L}{M(Oxidation (M))|F} 9 0 + 56.036 0 0 5.4536 5.4536 92.395 0 0 0 50.55130318649368 16.478174818886373 16.478174818886373 56.035853251533965 0 1.6677353201839438 0 0.3494850021680094 0 + + [TA]T{I|L}HEP{I|L}{M(Oxidation (M))|F} 5.4536 + + 51 + NaN NaN 112448.9 NaN 3870 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6055 36.296 NaN 295210 35 0 31374 0.261 + 18981 NAQKEIATL 9 60 494.2770987059424 986.5396444786849 2 494.27716064453125 MULTI HCD FTMS 0 0 0 6053 149615.046875 0.17387015016000895 -7 0.17269515991210938 2 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 83.42873516780209 0.004742894019233849 2 {[QG]|[NA]}QKE{I|L}AT{I|L} 9 0 + 83.628 0 0 8.4769 8.4769 93.408 0 0 0 20.87128018967598 67.43046868170298 20.87128018967598 9.208187539523763 0 1.7302046884880937 1.5228787452803376 0.4247425010840047 0.6549471895720984 + + {[QG]|[NA]}QKE{I|L}AT{I|L};{[QG]|[NA]}[AG]KE{I|L}AT{I|L};{[QG]|[NA]}QVV[TA]AT{I|L};{[QG]|[NA]}QKE[TA]{I|L}{I|L};{[QG]|[NA]}[AG]KE[TA]{I|L}{I|L};[TA]{I|L}AAQQAT{I|L} 8.4769;7.5436;5.6741;4.9795;4.0462;4.0252 +;-;-;-;-;- + 155 NaN NaN 124891.2 NaN 3871 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6056 36.3 NaN 175730 35 0 35380 0.261 + 15388 LPDGDHDL 8 52 441.20381893303284 880.3930849328657 2 441.2034912109375 MULTI HCD FTMS 0 0 0 6053 73331.4609375 0.09500139105020323 13 -0.2992210388183594 3 Unmodified _LPDGDHDL_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;nc|ENSG00000149925|P04075|ALDOA 28.486842064014134 0.3788298654084067 2 {I|L}PD 3 5 49.481 0 0 5.6204 0 0 0 552.2061251275999 552.2061251275999 33.99674684468792 0 0 0 0 0.3807196863200844 1.5228787452803376 0.4247425010840047 0 + {I|L}PD 5.6204 + + 13 + NaN NaN 117762 NaN 3872 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6057 36.303 NaN 174520 35 0 20648 0.261 + 14011 KYTEKLEEI 9 56 576.8108717790211 1151.6071906248421 2 576.8112182617188 MULTI HCD FTMS 0 0 0 6053 59446.546875 0.6174484434357886 -3 0.06978988647460938 4 Unmodified _KYTEKLEEI_ ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41 19.361941925380144 0.1930734562688509 2 [YT]D 3 7 25.942 0 0 2.2527 0 0 0 769.4468262051734 769.4468262051734 2.6709779556855295 0 0 0 0 0 2 0 0 [YT]D 2.2527 - 84 NaN NaN 122628.1 NaN 3873 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6058 36.306 NaN 58935 35 0 5546.3 0.262 + 20858 PIGQEHVQG 9 31 482.7458403259563 963.4771277187126 2 483.748291015625 MULTI HCD FTMS 0 0 0 6053 29524.02734375 0.7598431806693644 -1 0.0132904052734375 5 Unmodified _PIGQEHVQG_ ENST00000493656.1_1_6:37427445-37429528:+|nuORF 1.6526216038709556 0.33848895094777925 2 A 1 9 1.5938 0 0 0.16542 0 0 130.08041248609385 759.3430269830686 889.4234394691625 0 0 0 0 0 0 0 0 0 A 0.16542 - 1 + NaN NaN 89673 NaN 3874 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6059 36.31 NaN 67621 35 0 15264 0.261 -1 ECAEEKIP 8 24 488.22642589325227 974.4382988533046 2 488.2262268066406 MULTI HCD FTMS 0 0 0 6053 24086.5078125 0.47531309525947696 10 -0.2296295166015625 6 Carbamidomethyl (C) _EC(Carbamidomethyl (C))AEEKIP_ ENSG00000198911|ENST00000361204|SREBF2;ENST00000424354.5_1_22:42276758-42295397:+|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89753.4 NaN 3875 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6060 36.313 NaN 43610 35 0 5992.6 0.261 + 13913 KYQEVTNNL 9 28 554.7850759152151 1107.55559889723 2 554.7852172851562 MULTI HCD FTMS 0 0 0 6053 18963.1328125 0.010559648433214854 35 -0.855621337890625 7 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 5.296884461304476 0.3108627248283497 2 {M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7 8 17.976 0 0 1.623 0 0 313.1947499005875 0 313.1947499005875 0 17.97569463554474 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.623 - 14 NaN NaN 110109.2 NaN 3876 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6061 36.316 NaN 55467 35 0 7050 0.261 -1 SSGPVDPMM 9 27 476.6913975991144 951.3682422650288 2 476.6911926269531 MULTI HCD FTMS 0 0 0 6053 11973.185546875 0.22463566841254243 -57 1.4421272277832031 8 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 2 D 1 -1 12.474 0 0 1.3112 0 0 427.2072405325525 406.1099947565063 833.3172352890588 0 0 0 0 0 0.8494850021680094 0 0 0 D 1.3112 + + 2 + NaN NaN 93517.7 NaN 3877 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6062 36.32 NaN 34469 35 0 5898.8 0.261 + 9476 HPVYQRSLE 9 17 564.7936006830315 1127.572648432863 2 564.7940063476562 MULTI HCD FTMS 0 0 0 6053 18818.46875 0.37046813596512984 6 -0.13674163818359375 9 Unmodified _HPVYQRSLE_ MYO9A|p.H752Y|1|0.15|ENSG00000066933|chr15:71951825-71951825|G/A|missense_variant 2.9952420565917617 0.3283108881486655 2 HPV 3 6 26.198 0 0 2.3234 0 0 0 791.3682345025999 791.3682345025999 26.197887582883936 0 0 0 0 0 0 0 0 + HPV 2.3234 + + 3 + NaN NaN 84951.2 NaN 3878 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6063 36.323 NaN 12734 35 0 4337.4 0.261 -1 LLRFEFKPS 9 9 589.8303833007812 NaN 0 589.8303833007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLRFEFKPS_ ENST00000552981.5_2_12:98992390-98992438:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84561.2 NaN 3879 2182 6053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6066 36.335 NaN 480020 35 0 57299 0.327 -1 RQEYLKLEM 9 62 613.3160730684439 1224.6175932036876 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6065 243280.28125 0.8245147152897516 1 -0.03607940673828125 1 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 29.081581746732265 0.1154664336125038 2 HPVN{I|L}KE{I|L}E{M(Oxidation (M))|F} 10 -1 + 70.781 0 0 5.7799 5.7799 87.451 0 0 0 16.32499591703194 11.121506059964545 11.121506059964545 9.164539485499255 0 2.086696871556164 0 0.6549471895720985 0 HPVN{I|L}KE{I|L}E{M(Oxidation (M))|F};HPVGG{I|L}KE{I|L}E{M(Oxidation (M))|F} 5.7799;5.0315 -;- 399 + NaN NaN 160349.6 NaN 3880 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6067 36.34 NaN 181930 35 0 21110 0.261 + 1553 AYVHMVTHF 9 45 560.7657330135318 1119.5169130938634 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6065 114699.40625 0.10186188074682818 -24 0.6033973693847656 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 88.338 0 0 7.8907 7.8907 92.709 0 0 0 9.515449934959719 16.478174818886373 9.515449934959719 9.515449934959719 0 2.742992819099939 1.6989700043360187 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};[NP][YK]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 7.8907;7.0408;3.5372;1.4864 +;-;-;- + 274 NaN NaN 107912.8 NaN 3881 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6068 36.343 NaN 233500 35 0 21556 0.261 + 29780 VEEETVEVLT 10 35 574.2907273567691 1146.5669017803382 2 574.290771484375 MULTI HCD FTMS 0 0 0 6065 124040.1328125 0.030224329099925607 32 -0.7785453796386719 3 Unmodified _VEEETVEVLT_ REV__ENSG00000110931|ENST00000404169|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-2|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-3|CAMKK2;REV__nc|ENSG00000110931|Q96RR4-7|CAMKK2 25.399314129420986 0.2735354021946395 2 EEVT{I|L} 5 -1 55.305 0 0 4.8235 0 0 557.2847157209 0 557.2847157209 0 28.138181262758266 0 0 0 0.5 0 1.774227503252014 0 EEVT{I|L} 4.8235 - 48 NaN NaN 126767.5 NaN 3882 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6069 36.347 NaN 162050 35 0 21920 0.261 -1 RYMEVSGNL 9 41 542.7569143247312 1083.4992757162622 2 542.75830078125 MULTI HCD FTMS 0 0 0 6065 94035.8125 0.8379740030413723 4 -0.09279251098632812 4 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 27.223235318498237 0.1251536255799991 2 SGN{I|L} 4 -1 41.938 0 0 3.8706 0 0 694.3098079049399 0 694.3098079049399 0 35.96910013008056 0 0 0 1 0 0 0 SGN{I|L} 3.8706 + + 34 NaN NaN 102591.5 NaN 3883 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6070 36.35 NaN 95500 35 0 9307.8 0.261 + 2301 DLWAAWQE 8 38 509.73571882093495 1017.4568847086699 2 510.2211608886719 MULTI HCD FTMS 0 0 0 6065 4931.13330078125 0.37522321576194756 -5 0.113739013671875 5 Unmodified _DLWAAWQE_ REV__ENSG00000080298|ENST00000617270|RFX3;REV__ENSG00000132005|ENST00000254325|RFX1;REV__nc|ENSG00000080298|P48380-2|RFX3 4.75600775471527 0.5349361699807423 2 S 1 -1 11.237 0 0 1.1044 0 0 164.07671986425504 763.3244722955686 927.4011921598237 0 0 0 0 0 0 0 0.4247425010840047 0 S 1.1044 - 9 + NaN NaN 98409.1 NaN 3884 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6071 36.353 NaN 134230 35 0 23122 0.261 + 12960 KYIEERLHTL 10 42 434.57831159813065 1300.713105394592 3 434.57830810546875 MULTI HCD FTMS 0 0 0 6065 22900.6875 0.6676532052063179 1 -0.03607940673828125 6 Unmodified _KYIEERLHTL_ ENSG00000108055|ENST00000361804|SMC3 5.40270961882225 0.4467063037482923 2 V 1 10 6.9897 0 0 0.53737 0 0 616.3333579354108 582.2803438775999 1198.6137018130107 0 0 0 0 0 0 0 0 0 V 0.53737 - 4 + NaN NaN 120051.8 NaN 3885 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6072 36.357 NaN 62893 35 0 10355 0.261 -1 MPVHAAVQM 9 37 500.24110746886186 998.4676620045237 2 500.2410583496094 MULTI HCD FTMS 0 0 0 6065 34332.5 0.7680274930689284 5 -0.109283447265625 7 Oxidation (M) _M(Oxidation (M))PVHAAVQM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 12.531546534597751 0.2520865569484384 2 VQM 3 -1 28.94 0 0 2.8985 0 0 622.291307517775 0 622.291307517775 0 19.987737688117235 0 0 0 0.4247425010840047 0 0 0 VQM 2.8985 + + 15 NaN NaN 95513.9 NaN 3886 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6073 36.36 NaN 39248 35 0 5461.3 0.261 + 23639 RPTPQDYEM 9 25 568.7555027421264 1135.4964525510527 2 568.7556762695312 MULTI HCD FTMS 0 0 0 6065 17316.146484375 0.7636678000404149 -3 0.057239532470703125 8 Unmodified _RPTPQDYEM_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8 5.296884461304476 0.3108627248283497 2 YEM 3 6 23.188 0 0 2.0421 0 0 694.3398304669937 0 694.3398304669937 0 12.730012720637374 0 0 0 0 0 0 0 + YEM 2.0421 + + 13 NaN NaN 90988.8 NaN 3887 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6074 36.363 NaN 57566 35 0 4183 0.261 + -1 LDAVLYCTF 9 41 551.2696405517312 NaN 0 551.2571411132812 PEAK HCD FTMS 0 0 0 6065 5990.4296875 0.5382890110573805 7 -0.14896774291992188 9 Carbamidomethyl (C) _LDAVLYC(Carbamidomethyl (C))TF_ REV__ENST00000498068.1_1_4:174340755-174340953:-|nuORF 15.847184025352803 0.21527282152051216 2 T 1 -1 10.485 0 0 0.95269 0 0 834.431083006003 162.02240930728752 996.4534923132904 0 0 0 0 0 0.5 0 0 0 T 0.95269 + + 8 + NaN NaN 91987.9 NaN 3888 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6075 36.367 NaN 51356 35 0 7663.8 0.261 + 437 ALELAVHQI 9 40 497.2899773645398 992.5654017958797 2 497.289794921875 MULTI HCD FTMS 0 0 0 6065 12079.177734375 0.3491400860083353 6 -0.13241958618164062 10 Unmodified _ALELAVHQI_ nc|ENSG00000205810|Q07444-2|KLRC3 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97920.3 NaN 3889 2184 6065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6077 36.372 NaN 18576 35 0 5921 0.327 -1 RPYKCHCC 8 17 590.7436908363236 NaN 0 590.7432250976562 PEAK HCD FTMS 0 0 0 6076 10052.4501953125 0.6852473537281066 -4 0.09331893920898438 1 3 Carbamidomethyl (C) _RPYKC(Carbamidomethyl (C))HC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000186130|ENST00000373659|ZBTB6 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101507.1 NaN 3890 2185 6076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6079 36.379 NaN 2450300 35 0 204370 0.327 + 9016 HPEKLATVL 9 112 504.2977948624576 1006.5810367917152 2 504.29803466796875 MULTI HCD FTMS 0 0 0 6078 1558045.375 0.6934085713128584 -5 0.100677490234375 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 86.33184430468982 0.004622086694044132 2 {[TV]|[{I|L}S]}[PG]{I|L}HATV{I|L} 10 5 + 48.859 0 0 4.8539 4.8539 83.784 0 0 0 5.409976929489694 8.11688458269817 5.409976929489694 4.030899869919438 0 0.7134679910804405 2 2.363364334130467 0 {[TV]|[{I|L}S]}[PG]{I|L}HATV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}AHTV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAVH{I|L};{[TV]|[{I|L}S]}[PG]{I|L}ATVH{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAHV{I|L};[EP]K{I|L}HATV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}ATHV{I|L};HPEK{I|L}ATV{I|L};{[TV]|[{I|L}S]}[PG]{I|L}TAV{I|L}H;{[TV]|[{I|L}S]}[PG]{I|L}ATV{I|L}H 4.8539;4.4535;4.1704;4.0463;3.7966;3.7581;3.6724;3.5471;3.5457;3.4216 -;-;-;-;-;-;-;+;-;- + 2401 NaN NaN 460439.4 NaN 3891 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6080 36.383 NaN 205870 35 0 27170 0.261 + 16014 LPRNEADEL 9 50 528.7696325396639 1055.5247121461277 2 528.7697143554688 MULTI HCD FTMS 0 0 0 6078 114380.15625 0.8987918792657692 1 -0.036144256591796875 2 Unmodified _LPRNEADEL_ ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;nc|ENSG00000100342|O14791-3|APOL1 22.65808497894818 0.16459551161911185 2 RADE{I|L} 5 4 44.949 0 0 4.2584 0 0 453.2080250470719 0 453.2080250470719 0 25.395906230238126 0 0 0 0 0 0 0.6989700043360187 RADE{I|L} 4.2584 - 310 NaN NaN 117348.4 NaN 3892 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6081 36.387 NaN 341180 35 0 94028 0.263 + 14905 LKYLQRERL 9 55 406.9154348540103 1217.7244751622309 3 406.9154968261719 MULTI HCD FTMS 0 0 0 6078 129683.921875 0.32978408321150854 -6 0.13727188110351562 3 Unmodified _LKYLQRERL_ REV__ENSG00000099954|ENST00000262608|CECR2;REV__nc|ENSG00000099954|Q9BXF3-2|CECR2;REV__nc|ENSG00000099954|Q9BXF3|CECR2 12.872603262515298 0.2491399024913319 2 KY 2 -1 25.969 0 0 2.1326 0 0 0 923.5424223856576 923.5424223856576 3.0102999566398125 0 0 0 0 0.5 0 0 0 KY 2.1326 + + 30 + NaN NaN 135081.2 NaN 3893 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6082 36.39 NaN 185130 35 0 57435 0.261 -1 RYLEKPMEI 9 35 597.8131717482389 1193.6117905632777 2 597.8131103515625 MULTI HCD FTMS 0 0 0 6078 86197.8046875 0.2037646861279801 25 -0.5993118286132812 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 10.150570793230772 0.27265765907388223 2 KAP{[{M(Oxidation (M))|F}D]|MM}{I|L} 6 -1 22.848 0 0 1.9142 0 0 504.22455813852247 0 504.22455813852247 0 11.879165495209278 0 0 0 1.3182503180159344 0 0 0 KAP{[{M(Oxidation (M))|F}D]|MM}{I|L} 1.9142 - 29 NaN NaN 127937.2 NaN 3894 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6083 36.393 NaN 134740 35 0 48099 0.261 + 25005 RYVQQLQRL 9 27 602.3515458702982 1202.6885388073963 2 602.3519287109375 MULTI HCD FTMS 0 0 0 6078 74141.2578125 0.8416332831993782 -2 0.043437957763671875 5 Unmodified _RYVQQLQRL_ ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43 19.256988751693697 0.19398022840297344 2 Q{I|L}{M(Oxidation (M))|F} 3 7 18.5 0 0 1.5382 0 0 287.1967697073822 524.2583712213499 811.4551409287321 0 0 0 0 0 0 0 0 0.3807196863200844 Q{I|L}{M(Oxidation (M))|F} 1.5382 - 26 + NaN NaN 101623.9 NaN 3895 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6084 36.397 NaN 105140 35 0 22642 0.263 + 26570 SVSDLAPPR 9 35 471.25615137817573 940.4977498231515 2 471.2559814453125 MULTI HCD FTMS 0 0 0 6078 44226.77734375 0.4064300715725551 6 -0.142242431640625 6 Unmodified _SVSDLAPPR_ ENSG00000166295|ENST00000299381|ANAPC16 49.93300154707207 0.03166451819912738 2 [VS]{[TV]|[{I|L}S]}DA 6 5 38.389 0 0 4.0818 0 0 0 365.19356250710956 365.19356250710956 35.290456128171996 0 0 0 0 1.3494850021680094 1.5228787452803376 0 0 [VS]{[TV]|[{I|L}S]}DA 4.0818 - 29 + NaN NaN 95610.7 NaN 3896 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6085 36.4 NaN 96952 35 0 14014 0.261 -1 FPDSEPPRM 9 33 546.245054301141 1090.4755556690818 2 546.2449340820312 MULTI HCD FTMS 0 0 0 6078 29167.998046875 0.6154323525382871 -13 0.3036537170410156 7 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 31.26834338654808 0.10542797264966089 2 M{I|L}DRE 5 -1 64.412 0 0 5.9068 0 0 0 443.15766321353755 443.15766321353755 57.422750325201406 0 0 0 0 1.5 1.6989700043360187 0.3494850021680094 0 M{I|L}DRE 5.9068 - 72 + NaN NaN 109984.2 NaN 3897 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6086 36.403 NaN 66351 35 0 10582 0.263 + 20052 NYIKRNWRI 9 38 421.57543540392237 1261.7044768119672 3 421.5750732421875 MULTI HCD FTMS 0 0 0 6078 20758.990234375 0.1184703659425359 27 -0.6589126586914062 8 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 5.296884461304476 0.3108627248283497 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93664 NaN 3898 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6087 36.407 NaN 141540 35 0 25499 0.261 + 2998 EAAKPEPVI 9 29 477.2688510470625 952.5231491609251 2 477.2687683105469 MULTI HCD FTMS 0 0 0 6078 51978.54296875 0.2610260573565349 -7 0.15717697143554688 9 Unmodified _EAAKPEPVI_ ENSG00000160799|ENST00000683445|CCDC12;ENST00000488069.5_1_3:46964817-47018222:-|nuORF;ENST00000603885.5_1_3:46964817-47017956:-|nuORF;ENST00000604367.1_1_3:46964817-46965171:-|nuORF;SETD2-CCDC12|1|fusion;SETD2-CCDC12|2|fusion;SETD2-CCDC12|3|fusion;SETD2-CCDC12|4|fusion 10.073929032068715 0.27331982688540024 2 [RD]K 3 8 10.458 0 0 1.0979 0 0 0 550.286521670686 550.286521670686 -0.5115252244738127 0 -0.5115252244738127 0 0 0 0 0 0 [RD]K 1.0979 - 7 + NaN NaN 117159 NaN 3899 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6088 36.41 NaN 31080 35 0 8294.8 0.261 + 263 AFKFYKYF 8 25 557.2925251470808 NaN 0 557.2994995117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _AFKFYKYF_ tr|U7STD1|U7STD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01368PE=4SV=1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101536.1 NaN 3900 2186 6078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6090 36.415 NaN 397600 35 0 39110 0.327 + 9164 HPIKQVDVL 9 61 524.8111264829591 1047.6077000327182 2 524.8111572265625 MULTI HCD FTMS 0 0 0 6089 227802.234375 0.7803971983227449 1 -0.013210296630859375 1 Unmodified _HPIKQVDVL_ ENSG00000107960|ENST00000224950|STN1 45.69961567697781 0.039180348357221985 2 DV{I|L} 3 6 33.232 0 0 3.1722 0 0 702.419725486525 0 702.419725486525 0 3.935078169319297 0 0 0 0.4247425010840047 0 0.8807196863200843 0 + DV{I|L} 3.1722 + + 113 NaN NaN 141554.3 NaN 3901 2187 6089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6091 36.42 NaN 217800 35 0 31811 0.262 + -1 RPPPLQIEEM 10 60 409.2130939799611 1224.6174525400834 3 409.2130432128906 MULTI HCD FTMS 0 0 0 6089 58366.80078125 0.3886482587703943 3 -0.052837371826171875 2 Oxidation (M) _RPPPLQIEEM(Oxidation (M))_ REV__ENSG00000197081|ENST00000356956|IGF2R 11.517880264261096 0.4033776509493788 2 E{M(Oxidation (M))|F} 2 -1 34.464 0 0 2.8143 0 0 930.5293005398865 0 930.5293005398865 0 24.731975075880328 0 0 0 1 0 0.5 0 E{M(Oxidation (M))|F} 2.8143 + + 26 + NaN NaN 122313.9 NaN 3902 2187 6089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6092 36.423 NaN 70887 35 0 10859 0.261 + -1 EPWMGAQL 8 41 474.21699719148677 946.4194414497736 2 474.21612548828125 MULTI HCD FTMS 0 0 0 6089 19223.490234375 0.42272641295821434 -2 0.0435028076171875 3 Oxidation (M) _EPWM(Oxidation (M))GAQL_ REV__CCL1|p.L13Q|1|0.44|ENSG00000108702|chr17:34363124-34363124|A/T|missense_variant 11.640296217721598 0.50814828952472 2 AQ{I|L} 3 -1 34.693 0 0 3.6657 0 0 616.2267933576187 0 616.2267933576187 0 34.69273760456403 0 0 0 0.4247425010840047 0 0 0.4247425010840047 AQ{I|L} 3.6657 + + 8 NaN NaN 93176.2 NaN 3903 2187 6089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6094 36.428 NaN 1305000 35 0 131480 0.327 + 18982 NAQKEIATL 9 91 494.2770987059424 986.5396444786849 2 494.2773132324219 MULTI HCD FTMS 0 0 0 6093 824552.0625 0.9582257527974329 -1 0.013210296630859375 1 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 173.68634876852585 1.8204875074637502E-09 2 NAQKE{I|L}AT{I|L} 9 0 + 101.68 0 0 10.307 10.307 93.003 0 0 0 7.949845635351352 7.949845635351352 7.949845635351352 7.949845635351352 0 2.774227503252014 1.6989700043360187 2.392159058960253 0 + + NAQKE{I|L}AT{I|L};{[QG]|[NA]}QT[VG]{I|L}AT{I|L};NA[AG]KE{I|L}AT{I|L};{[QG]|[NA]}[AG]T[VG]{I|L}AT{I|L};NAQVV[TA]AT{I|L};NA[TP]K[TA]AT{I|L};NAQVV{[QD]|[EN]|[WG]|[KD]|[RS]}T{I|L};{[QG]|[NA]}QT[VG][TA]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}KGQQAT{I|L};[TA]{I|L}AAQQAT{I|L} 10.307;9.5013;9.3738;8.5724;7.428;6.2082;6.1658;5.7;5.4828;5.4711 +;-;-;-;-;-;-;-;-;- + 1546 + NaN NaN 279774.4 NaN 3904 2188 6093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6095 36.433 NaN 79109 35 0 15655 0.261 -1 TATLHEPIM 9 32 514.7576965287152 1027.5008401242303 2 514.7577514648438 MULTI HCD FTMS 0 0 0 6093 59717.66015625 0.38006012756411023 6 -0.14593505859375 2 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 26.88365393820708 0.12808753336095696 2 E[{I|L}P]{M(Oxidation (M))|F} 4 -1 25.49 0 0 2.4807 0 0 523.2729969709 0 523.2729969709 0 23.499934467764874 0 0 0 1 0 0.3807196863200844 0 E[{I|L}P]{M(Oxidation (M))|F} 2.4807 + + 7 NaN NaN 89747.1 NaN 3905 2188 6093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6096 36.436 NaN 106180 35 0 20456 0.261 + 35016 YTEKLEEIK 9 46 576.8108717790211 1151.6071906248421 2 576.8109741210938 MULTI HCD FTMS 0 0 0 6093 44246.5859375 0.45957228889852536 3 -0.05617523193359375 3 Unmodified _YTEKLEEIK_ ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41 3.944395688203298 0.32111559684428237 2 KY 2 8 19.464 0 0 1.6902 0 0 0 857.4260761667953 857.4260761667953 0 0 0 0 0 0 0 0 0 KY 1.6902 - 14 + NaN NaN 107582 NaN 3906 2188 6093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6097 36.44 NaN 62085 35 0 10986 0.262 + -1 HQTESLMT 8 29 481.71613286382154 961.4177127944431 2 481.7157897949219 MULTI HCD FTMS 0 0 0 6093 8874.1865234375 0.007666810497786843 183 -4.737434387207031 4 Oxidation (M) _HQTESLM(Oxidation (M))T_ REV__ENSG00000104518|ENST00000262580|GSDMD;REV__ENST00000524846.5_1_8:144644315-144645071:+|nuORF;REV__ENST00000531184.5_1_8:144643499-144645071:+|nuORF 4.3292370932331545 0.5355693454741696 2 V[{M(Oxidation (M))|F}T] 3 -1 15.458 0 0 1.6078 0 0 596.2555861848713 0 596.2555861848713 0 8.467874862246562 0 0 0 0.5 0 0 0 V[{M(Oxidation (M))|F}T] 1.6078 - 7 + NaN NaN 86823 NaN 3907 2188 6093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6099 36.445 NaN 174550 35 0 45606 0.327 -1 0 38 441.7880863208449 881.5616197084898 2 441.78790283203125 MULTI HCD FTMS 0 0 0 6098 49048.3046875 0.4095343844583426 -8 0.16652297973632812 1 NaN NaN 2 N 1 -1 5.4846 0 0 0.62214 0 0 100.09062712215355 664.4169268293058 764.5075539514594 0 0 0 0 0 0 0 0 0 N 0.62214 - 6 + NaN NaN 120696.8 NaN 3908 2189 6098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6100 36.449 NaN 92756 35 0 26886 0.261 + 2728 DVSHPIIYR 9 35 550.29857515993 1098.58259738666 2 550.2986450195312 MULTI HCD FTMS 0 0 0 6098 35870.7109375 0.7536393668705199 -2 0.02970123291015625 2 Unmodified _DVSHPIIYR_ ENSG00000169018|ENST00000306917|FEM1B 19.256988751693697 0.19398022840297344 2 [DV]SH 4 5 36.427 0 0 3.3158 0 0 0 657.372485652791 657.372485652791 32.447274948966935 0 0 0 0 0.5 1.5228787452803376 0 0 + [DV]SH 3.3158 + + 15 + NaN NaN 103895.3 NaN 3909 2189 6098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6101 36.453 NaN 41702 35 0 6509.1 0.261 -1 ECAEEKIP 8 20 488.22642589325227 974.4382988533046 2 488.2264709472656 MULTI HCD FTMS 0 0 0 6098 10361.517578125 0.20446986462222638 17 -0.4048728942871094 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))AEEKIP_ ENSG00000198911|ENST00000361204|SREBF2;ENST00000424354.5_1_22:42276758-42295397:+|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96980.6 NaN 3910 2189 6098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6102 36.456 NaN 43072 35 0 6972 0.261 -1 AACCTWWR 8 14 555.7344772004384 1109.4544014676767 2 555.7353515625 MULTI HCD FTMS 0 0 0 6098 8505.2470703125 0.05374881595979067 -21 0.5138130187988281 4 2 Carbamidomethyl (C) _AAC(Carbamidomethyl (C))C(Carbamidomethyl (C))TWWR_ ENST00000418088.5_2_1:3659636-3662367:-|nuORF 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95641.1 NaN 3911 2189 6098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6103 36.46 NaN 55113 35 0 6015.5 0.262 -1 VAAPADPEM 9 29 458.7082455358653 915.4019381385306 2 458.7074890136719 MULTI HCD FTMS 0 0 0 6098 14268.8310546875 0.7413182311843216 7 -0.1857452392578125 5 Oxidation (M) _VAAPADPEM(Oxidation (M))_ ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 10.823927491677226 0.26684000660059787 2 [Q{I|L}][WP]P 5 -1 16.478 0 0 1.8001 0 0 0 291.07444177799067 291.07444177799067 -4.490925311194189 0 -4.490925311194189 0 0 1 0 0 0 [Q{I|L}][WP]P 1.8001 - 11 + NaN NaN 93966.1 NaN 3912 2189 6098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6104 36.463 NaN 30697 35 0 8329.1 0.261 + 8879 HNRYRVHF 8 18 564.7936006830315 1127.572648432863 2 564.7931518554688 MULTI HCD FTMS 0 0 0 6098 8651.0693359375 0.1703085183798421 13 -0.3248176574707031 6 Unmodified _HNRYRVHF_ ENST00000531140.1_1_11:121174081-121177378:+|nuORF 0.6903765706972694 0.5409681170271811 2 G 1 8 2.4743 0 0 0.21943 0 0 563.787932711963 503.7322176568969 1067.52015036886 0 0 0 0 0 0 0 0 0 G 0.21943 - 1 + NaN NaN 91133.1 NaN 3913 2189 6098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6106 36.468 NaN 180390 35 0 23096 0.327 -1 RQEYLKLEM 9 39 613.3160730684439 1224.6175932036876 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6105 103964.9296875 0.3523533184069274 7 -0.17583847045898438 1 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 14.838274106304384 0.23215694253501695 2 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 36.414 0 0 2.9735 0 0 542.2936878888687 0 542.2936878888687 0 5.216525140920609 0 0 0 0 0 0.9247425010840047 0 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9735 - 49 NaN NaN 108768.7 NaN 3914 2190 6105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6107 36.472 NaN 189600 35 0 13698 0.264 -1 KMPKMKMPTF 10 58 418.88473716916974 1253.6323821077092 3 418.88494873046875 MULTI HCD FTMS 0 0 0 6105 76043.0390625 0.6258946729586808 -9 0.18965911865234375 2 Oxidation (M) _KMPKM(Oxidation (M))KMPTF_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 17.86316937532769 0.34402595751606074 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7541 0 0 1088.5535990039966 0 1088.5535990039966 0 -0.21652514092060926 -0.21652514092060926 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7541 + + 6 + NaN NaN 112090 NaN 3915 2190 6105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6108 36.476 NaN 36502 35 0 6641.8 0.261 + -1 MTVSYFLEM 9 23 568.7555027421264 1135.4964525510527 2 568.7539672851562 MULTI HCD FTMS 0 0 0 6105 18757.888671875 0.8272507736279313 3 -0.0664825439453125 3 Oxidation (M) _M(Oxidation (M))TVSYFLEM_ REV__ENSG00000173638|ENST00000311124|SLC19A1;REV__nc|ENSG00000173638|P41440-2|SLC19A1;REV__nc|ENSG00000173638|P41440-3|SLC19A1 3.944395688203298 0.32111559684428237 2 REM 3 -1 23.188 0 0 2.0421 0 0 701.302049705275 0 701.302049705275 0 12.730012720637374 0 0 0 0 0 0 0 REM 2.0421 - 4 NaN NaN 103719.2 NaN 3916 2190 6105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6109 36.479 NaN 14956 35 0 2437.5 0.261 + 16396 LSHWYPFKR 9 16 617.3297393213423 NaN 0 617.359619140625 PEAK HCD FTMS 0 0 0 6105 3147.128662109375 0.514374395719851 -2 0.0396270751953125 4 Unmodified _LSHWYPFKR_ tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100747.6 NaN 3917 2190 6105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6111 36.485 NaN 274240 35 0 28642 0.327 + 1554 AYVHMVTHF 9 65 560.7657330135318 1119.5169130938634 2 560.7657470703125 MULTI HCD FTMS 0 0 0 6110 101910.4140625 0.0905042735920375 -17 0.40177154541015625 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 92.8221339359638 0.0044520161739443126 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 95.328 0 0 8.5151 8.5151 93.742 0 0 0 10 10 10 10 0 2.548455006504028 2 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}HWE;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}H[PA]{M(Oxidation (M))|F} 8.5151;7.6218;7.3325;5.0372;3.4928;3.0908;2.9157;2.7824;2.5807;2.3979 +;+;-;-;-;-;-;-;-;- + 489 + NaN NaN 127190.9 NaN 3918 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6112 36.489 NaN 194800 35 0 16656 0.261 + 27895 TEEDLDLVTL 10 38 574.2907273567691 1146.5669017803382 2 574.2908935546875 MULTI HCD FTMS 0 0 0 6110 93760.8984375 0.022846317452460206 39 -1.0141372680664062 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 25.399314129420986 0.2735354021946395 2 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3554172424988 0 815.3554172424988 0 11.276362525516532 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 26 NaN NaN 114575.7 NaN 3919 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6113 36.493 NaN 112180 35 0 16241 0.261 -1 RYMEVSGNL 9 33 542.7569143247312 1083.4992757162622 2 542.7584228515625 MULTI HCD FTMS 0 0 0 6110 67364.6328125 0.6003011993042842 11 -0.28513336181640625 3 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 21.590151480376914 0.17382222009858564 2 VSGN{I|L} 5 -1 46.766 0 0 4.3162 0 0 595.2427845685562 0 595.2427845685562 0 40.823872065994564 0 0 0 0.8807196863200843 0 0 0 VSGN{I|L} 4.3162 + + 35 NaN NaN 97202.9 NaN 3920 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6114 36.496 NaN 98866 35 0 9357.7 0.261 + -1 YSEFRIGM 8 46 509.73571882093495 1017.4568847086699 2 510.22100830078125 MULTI HCD FTMS 0 0 0 6110 8401.47265625 0.6392906853105655 1 -0.036712646484375 4 Oxidation (M) _YSEFRIGM(Oxidation (M))_ REV__ENST00000537175.1_1_12:16554488-16554707:-|nuORF 4.75600775471527 0.5349361699807423 2 S{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.7651 0 0 765.3796122250747 0 765.3796122250747 0 9.731975075880328 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.7651 - 11 + NaN NaN 105628.1 NaN 3921 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6115 36.499 NaN 68210 35 0 12610 0.261 + 35832 YYQDTPKQI 9 35 578.288119783946 1154.5616866346918 2 579.2928466796875 MULTI HCD FTMS 0 0 0 6110 26749.6640625 0.6541024189389482 -5 0.10552978515625 5 Unmodified _YYQDTPKQI_ ENSG00000048162|ENST00000614830|NOP16 4.75600775471527 0.31496297302216103 2 Q 1 8 6.9897 0 0 0.6054 0 0 130.09197076592847 893.3873995416624 1023.4793703075909 0 0 0 0 0 0 0 0 0 + Q 0.6054 + + 8 + NaN NaN 110411.2 NaN 3922 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6116 36.503 NaN 49178 35 0 6292.4 0.261 + -1 LPMVHQCV 8 32 500.24110746886186 998.4676620045237 2 500.24090576171875 MULTI HCD FTMS 0 0 0 6110 22241.66796875 0.49755224617230165 12 -0.2925987243652344 6 Carbamidomethyl (C),Oxidation (M) _LPM(Oxidation (M))VHQC(Carbamidomethyl (C))V_ REV__ENSG00000203965|ENST00000371088|EFCAB7 5.230669730166228 0.5342319408533849 2 QM 2 -1 25.217 0 0 2.5255 0 0 721.3588124005875 0 721.3588124005875 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 QM 2.5255 - 8 NaN NaN 89544.3 NaN 3923 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6117 36.506 NaN 35349 35 0 4297.3 0.261 + 26592 SVTALAVSR 9 25 452.26644932333403 902.5183457134681 2 452.2666320800781 MULTI HCD FTMS 0 0 0 6110 19256.458984375 0.8403971863297488 2 -0.04993438720703125 7 Unmodified _SVTALAVSR_ ENSG00000131653|ENST00000326181|TRAF7;nc|ENSG00000131653|Q6Q0C0-2|TRAF7 18.373094154950223 0.20161688160436167 2 [VS][TA]{I|L}AV{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 45.096 0 0 4.9967 4.9967 91.362 0 0 0 45.09636219130371 7.147642715192504 7.147642715192504 45.09636219130371 0 0.8494850021680094 1.5228787452803376 0 0 + + [VS][TA]{I|L}AV{[QD]|[EN]|[WG]|[KD]|[RS]} 4.9967 + + 16 + NaN NaN 97605.2 NaN 3924 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6118 36.509 NaN 51812 35 0 4818.7 0.261 + 13914 KYQEVTNNL 9 30 554.7850759152151 1107.55559889723 2 554.7854614257812 MULTI HCD FTMS 0 0 0 6110 12498.435546875 0.006959772240439 44 -1.1636581420898438 8 Unmodified _KYQEVTNNL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 5.296884461304476 0.3108627248283497 2 {M(Oxidation (M))|F}{I|L} 2 8 10.969 0 0 0.99039 0 0 130.10956725836132 714.2905367486936 844.400104007055 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.99039 - 8 + NaN NaN 91084.9 NaN 3925 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6119 36.513 NaN 54096 35 0 16136 0.261 + -1 TAQCRLTM 8 22 491.2299309587449 980.4453089842898 2 491.23052978515625 MULTI HCD FTMS 0 0 0 6110 25367.931640625 0.7409957508665995 -2 0.039684295654296875 9 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))TAQCRLTM(Oxidation (M))_ REV__ENST00000237536.8_2_20:35422463-35422682:-|nuORF 7.910154910731844 0.5302565402355366 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 95735.5 NaN 3926 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6120 36.516 NaN 29751 35 0 8223.5 0.261 + 32747 WRAKKGKP 8 24 485.8001806170543 NaN 0 485.7999572753906 PEAK HCD FTMS 0 0 0 6110 2637.76806640625 0.24886638086672952 1 -0.036712646484375 10 Unmodified _WRAKKGKP_ REV__ENST00000369162.6_1_6:101328966-101329125:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99906.4 NaN 3927 2191 6110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6122 36.521 NaN 56055 35 0 9062.8 0.327 -1 MPAPHTSITM 10 26 551.2571883979376 NaN 0 551.2572631835938 PEAK HCD FTMS 0 0 0 6121 26390.3046875 0.5394717057789732 1 -0.01322174072265625 1 Oxidation (M) _MPAPHTSITM(Oxidation (M))_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 5.731851221503515 0.33527861879838866 2 T 1 -1 11.99 0 0 1.0895 0 0 165.04519353983738 831.3814791315061 996.4266726713436 0 0 0 0 0 0.5 0 0 0 T 1.0895 + + 1 + NaN NaN 86092.2 NaN 3928 2192 6121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6123 36.526 NaN 60530 35 0 8499.5 0.261 -1 SMFNSTQSL 9 31 515.7289028146106 1029.443252696021 2 515.7290649414062 MULTI HCD FTMS 0 0 0 6121 14347.9638671875 0.4346554302422575 1 -0.01322174072265625 2 Oxidation (M) _SM(Oxidation (M))FNSTQSL_ ENSG00000179029|ENST00000437139|TMEM107;ENST00000526920.1_1_17:8077791-8079276:-|nuORF;ENST00000529756.1_1_17:8077523-8079276:-|nuORF;nc|ENSG00000179029|Q6UX40-3|TMEM107;nc|ENSG00000179029|Q6UX40-4|TMEM107 6.2057823575117 0.30397260197431997 2 S{I|L} 2 -1 25.969 0 0 2.5226 0 0 811.3136257496176 0 811.3136257496176 0 20.48455006504028 0 0 0 0.5 0 0 0 S{I|L} 2.5226 + + 5 NaN NaN 113677 NaN 3929 2192 6121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6124 36.529 NaN 41313 35 0 7428.1 0.261 -1 MVDEKDQET 9 31 555.7344772004384 1109.4544014676767 2 556.7905883789062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))VDEKDQET_ DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17 0.5247636613948944 0.34703895399870666 2 E 1 -1 5.4846 0 0 0.49435 0 0 159.55817451630793 817.8165987604124 977.3747732767204 0 0 0 0 0 0 0 0 0 E 0.49435 + + 1 + NaN NaN 87846.9 NaN 3930 2192 6121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6126 36.535 NaN 2568600 35 0 223230 0.327 + 9017 HPEKLATVL 9 109 504.2977948624576 1006.5810367917152 2 504.298095703125 MULTI HCD FTMS 0 0 0 6125 1828964.75 0.8139813221287469 2 -0.056369781494140625 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 96.36657018975838 0.004359138328518304 2 {[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L} 9 8 + 53.316 0 0 5.2967 5.2967 85.192 0 0 0 5.98689918391166 6.411962188136542 5.98689918391166 5.98689918391166 0 0.2614393726401688 2 2.0400990676322905 0 {[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[K{I|L}]ATV{I|L};{[TV]|[{I|L}S]}[{I|L}A]KEP{I|L}H;[EP]H[K{I|L}]ATV{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]HTV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[K{I|L}]AVT{I|L};[{I|L}A]{[TV]|[{I|L}S]}KEPH{I|L};[{I|L}A]K{[TV]|[{I|L}S]}EPH{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]TVH{I|L};[{I|L}A]K[EP]HTV{I|L} 5.2967;4.702;4.5757;4.3185;4.2603;3.663;3.5607;3.5241;3.4868;3.4025 -;+;-;-;-;-;-;-;-;- + 2310 NaN NaN 490285.8 NaN 3931 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6127 36.539 NaN 844670 35 0 255040 0.262 + 13937 KYQRILERL 9 66 406.9154348540103 1217.7244751622309 3 406.9154052734375 MULTI HCD FTMS 0 0 0 6125 354269.25 0.9009008837185795 1 -0.039825439453125 2 Unmodified _KYQRILERL_ ENSG00000198836|ENST00000361510|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313-2|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313|OPA1 14.218169984304629 0.23751450456323905 2 KY 2 7 25.969 0 0 2.1326 0 0 0 923.5419420896077 923.5419420896077 3.0102999566398125 0 0 0 0 0.5 0 0 0 + KY 2.1326 + + 41 + NaN NaN 224662.3 NaN 3932 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6128 36.543 NaN 282990 35 0 64586 0.261 + 2999 EAAKPEPVI 9 46 477.2688510470625 952.5231491609251 2 477.2686767578125 MULTI HCD FTMS 0 0 0 6125 199131.625 1 0 0 3 Unmodified _EAAKPEPVI_ ENSG00000160799|ENST00000683445|CCDC12;ENST00000488069.5_1_3:46964817-47018222:-|nuORF;ENST00000603885.5_1_3:46964817-47017956:-|nuORF;ENST00000604367.1_1_3:46964817-46965171:-|nuORF;SETD2-CCDC12|1|fusion;SETD2-CCDC12|2|fusion;SETD2-CCDC12|3|fusion;SETD2-CCDC12|4|fusion 21.536976647645854 0.1742816388551942 2 {[CP]|[EA]}AK 4 5 16.44 0 0 1.726 0 0 0 550.2878844512685 550.2878844512685 3.2795501485934846 0 0 0 0 0.3252574989159953 0 0 0 + {[CP]|[EA]}AK 1.726 + + 38 + NaN NaN 130749.4 NaN 3933 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6129 36.546 NaN 130320 35 0 44462 0.261 -1 RYLEKPMEI 9 28 597.8131717482389 1193.6117905632777 2 597.81298828125 MULTI HCD FTMS 0 0 0 6125 77259.3828125 0.18263497482684105 32 -0.8148689270019531 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 5.296884461304476 0.3108627248283497 2 K 1 -1 16.99 0 0 1.4234 0 0 561.2922848033153 501.20273767642817 1062.4950224797435 0 0 0 0 0 1 0 0 0 K 1.4234 + + 4 + NaN NaN 107562.5 NaN 3934 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6130 36.549 NaN 225040 35 0 60305 0.261 -1 VPTPIQMQM 9 50 530.7622227240029 NaN 0 530.7625122070312 PEAK HCD FTMS 0 0 0 6125 71634.5234375 0.7614967567607072 2 -0.056369781494140625 5 Oxidation (M) _VPTPIQMQM(Oxidation (M))_ ENSG00000118197|ENST00000331314|DDX59;nc|ENSG00000118197|Q5T1V6-2|DDX59 14.838274106304384 0.2220448417561729 2 C(Carbamidomethyl (C))E{M(Oxidation (M))|F} 3 -1 14.297 0 0 1.3494 0 0 132.10184504956857 488.2219332330688 620.3237782826374 0 0 0 0 0 0 0 0.6505149978319906 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F} 1.3494 - 82 + NaN NaN 134767.7 NaN 3935 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6131 36.553 NaN 154900 35 0 11768 0.261 + 35833 YYQDTPKQI 9 39 578.288119783946 1154.5616866346918 2 578.2879028320312 MULTI HCD FTMS 0 0 0 6125 90487.8359375 0.7058391174947436 -2 0.04993438720703125 6 Unmodified _YYQDTPKQI_ ENSG00000048162|ENST00000614830|NOP16 63.960520009940105 0.0120409805053046 2 YYQDT[KP]Q{I|L} 9 0 + 61.801 0 0 5.3527 5.3527 92.337 0 0 0 1.0430311173319495 53.84189037913593 1.0430311173319495 61.80069055257668 0 1.8182503180159344 2 0.3494850021680094 0 + + YYQDT[KP]Q{I|L} 5.3527 + + 51 NaN NaN 109179.1 NaN 3936 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6132 36.556 NaN 89632 35 0 18480 0.261 -1 FPDSEPPRM 9 30 546.245054301141 1090.4755556690818 2 546.2453002929688 MULTI HCD FTMS 0 0 0 6125 34522.375 0.7284074288305578 -6 0.11931991577148438 7 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 24.990960013464015 0.14443998892849796 2 RESDPE 6 -1 49.157 0 0 4.5078 0 0 359.1485768048844 0 359.1485768048844 0 42.1669877129645 0 0 0 0.5 0 0 0 RESDPE 4.5078 - 21 NaN NaN 93860.1 NaN 3937 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6133 36.559 NaN 36653 35 0 11252 0.261 + -1 IMLLGMQIIR 10 16 602.3515458702982 1202.6885388073963 2 602.3517456054688 MULTI HCD FTMS 0 0 0 6125 31215.853515625 0.3543546745412362 5 -0.13919448852539062 8 Oxidation (M) _IM(Oxidation (M))LLGMQIIR_ REV__ENSG00000280021|ENST00000624103|OR51F1 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108585.5 NaN 3938 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6134 36.562 NaN 34985 35 0 4147.8 0.263 + 21819 QAQLSIRV 8 27 457.77452769768894 913.5345024621779 2 457.7746276855469 MULTI HCD FTMS 0 0 0 6125 21758.400390625 0.5851102293727694 -1 0.01322174072265625 9 Unmodified _QAQLSIRV_ REV__ENST00000485483.1_1_X:54835569-54835758:+|nuORF 2.0597508629832335 0.5389364538378849 2 {I|L}A 2 -1 7.0783 0 0 0.77483 0 0 290.20199621393414 436.18259607486567 726.3845922887998 0 0 0 0 0 0 0 0 0 {I|L}A 0.77483 - 4 + NaN NaN 89284.8 NaN 3939 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6135 36.566 NaN 59228 35 0 5813.1 0.261 -1 MPVGMTHGL 9 37 479.72771726957825 957.4408816059565 2 479.72735595703125 MULTI HCD FTMS 0 0 0 6125 12145.748046875 0.6356190020616196 8 -0.20873641967773438 10 Oxidation (M) _MPVGM(Oxidation (M))THGL_ ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant 3.944395688203298 0.32111559684428237 2 MPV 3 -1 26.198 0 0 2.7362 0 0 0 627.2574556940061 627.2574556940061 19.20818753952375 0 0 0 0 0 0 0 0 MPV 2.7362 + + 5 + NaN NaN 89725.8 NaN 3940 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6136 36.569 NaN 14634 35 0 4190 0.261 + -1 RHWECPCCY 9 15 627.2334843167795 NaN 0 627.2332763671875 PEAK HCD FTMS 0 0 0 6125 2987.241943359375 0.25208616187666805 2 -0.056369781494140625 11 Carbamidomethyl (C) _RHWEC(Carbamidomethyl (C))PCCY_ REV__ENSG00000178295|ENST00000381254|GEN1 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84955.9 NaN 3941 2193 6125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6138 36.574 NaN 218840 35 0 24127 0.327 + 9165 HPIKQVDVL 9 63 524.8111264829591 1047.6077000327182 2 524.8113403320312 MULTI HCD FTMS 0 0 0 6137 51293.90234375 0.1757209177071004 8 -0.19537353515625 1 Unmodified _HPIKQVDVL_ ENSG00000107960|ENST00000224950|STN1 43.77239144664712 0.04802738721622131 2 DV{I|L} 3 6 30.718 0 0 2.9322 0 0 702.4159413068375 0 702.4159413068375 0 6.804009240123889 0 0 0 0.3494850021680094 0 0.7302046884880937 0 + DV{I|L} 2.9322 + + 55 NaN NaN 120390.5 NaN 3942 2194 6137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6139 36.579 NaN 152920 35 0 26450 0.261 + 33895 YLNRLGQTT 9 44 533.2875775825734 1064.5606022319466 2 533.7745361328125 MULTI HCD FTMS 0 0 0 6137 3021.00244140625 0.16178894210075714 6 -0.14905929565429688 2 Unmodified _YLNRLGQTT_ REV__ENSG00000121274|ENST00000561678|TENT4B 7.289230182591677 0.29575926068275815 2 [Y{I|L}]E[RV]E 6 -1 35.15 0 0 3.3019 0 0 0 272.15227811072685 272.15227811072685 24.181212380090216 0 0 0 0 0 2 0.8494850021680094 0 [Y{I|L}]E[RV]E 3.3019 - 35 NaN NaN 104686 NaN 3943 2194 6137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6140 36.582 NaN 64560 35 0 11090 0.261 + -1 EPWMGAQL 8 36 474.21699719148677 946.4194414497736 2 474.21612548828125 MULTI HCD FTMS 0 0 0 6137 14261.6318359375 0.31361466598588994 5 -0.12255477905273438 3 Oxidation (M) _EPWM(Oxidation (M))GAQL_ REV__CCL1|p.L13Q|1|0.44|ENSG00000108702|chr17:34363124-34363124|A/T|missense_variant 11.640296217721598 0.50814828952472 2 AQ{I|L} 3 -1 20.19 0 0 2.1333 0 0 616.2286283167642 0 616.2286283167642 0 4.704999916446795 0 0 0 0.8494850021680094 0 0 0.4247425010840047 AQ{I|L} 2.1333 + + 22 + NaN NaN 100833.8 NaN 3944 2194 6137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6141 36.586 NaN 22010 35 0 4527.5 0.261 + -1 VCDECFIHG 9 23 568.729424282679 1135.444295632158 2 569.2308349609375 MULTI HCD FTMS 0 0 0 6137 2221.587646484375 0.21367416824001553 5 -0.12255477905273438 4 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))DEC(Carbamidomethyl (C))FIHG_ REV__ENSG00000176040|ENST00000452346|TMPRSS7;REV__nc|ENSG00000176040|Q7RTY8-2|TMPRSS7 1.844237919475145 0.33703635659052655 2 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D 3 -1 7.4473 0 0 0.65589 0 0 0 758.2948702447874 758.2948702447874 0.45757490560674974 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D 0.65589 + + 2 + NaN NaN 87417.3 NaN 3945 2194 6137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6143 36.591 NaN 270260 35 0 27058 0.326 + 18983 NAQKEIATL 9 59 494.2770987059424 986.5396444786849 2 494.2772521972656 MULTI HCD FTMS 0 0 0 6142 164150.09375 0.19076157141425248 6 -0.15236663818359375 1 Unmodified _NAQKEIATL_ ENSG00000047410|ENST00000367478|TPR 96.36657018975838 0.004359138328518304 2 {[QG]|[NA]}QVV[TA]AT{I|L} 10 4 + 65.009 0 0 6.5896 6.5896 92.225 0 0 0 39.79241848341495 19.01741229020267 19.01741229020267 17.97051108086609 0 2.2302046884880937 1.6989700043360187 1.4802046884880937 0 {[QG]|[NA]}QVV[TA]AT{I|L};[{I|L}T]AAAQQAT{I|L};[{I|L}T]{[NV]|[RG]}QQAT{I|L};[TA]{I|L}AAQQAT{I|L} 6.5896;4.768;4.411;3.881 -;-;-;- 195 + NaN NaN 126749 NaN 3946 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6144 36.595 NaN 369510 35 0 49706 0.261 + 15318 LPARDSPSL 9 66 478.26399625755926 954.5134395819185 2 478.2637939453125 MULTI HCD FTMS 0 0 0 6142 209696.703125 0.4424485425586817 -7 0.16247940063476562 2 Unmodified _LPARDSPSL_ ENSG00000041802|ENST00000265245|LSG1;LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant 67.83816525789305 0.009787749748478139 2 {I|L}PARDSPS{I|L} 9 0 + 75.244 0 0 7.883 7.883 94.032 0 0 0 53.28386162270782 6.879617791072832 6.879617791072832 15.088643834802156 0 1.8424778212679485 1.6989700043360187 1.1747425010840047 0 + + {I|L}PARDSPS{I|L};[{I|L}P]ARDSSP{I|L};{I|L}PARD[DG]V{I|L};[{I|L}P]ARD[VG]D{I|L};[PS]{[QV]|[N{I|L}]|[RA]|[KV]}D{I|L}SP{I|L};{[RE]|[WV]}[VG]VDPA{I|L};{[RE]|[WV]}[VG]VDAP{I|L};{[RE]|[WV]}[VG][TP]SP{I|L};[PS]{[QV]|[N{I|L}]|[RA]|[KV]}D[PS]{I|L}{I|L};{[RE]|[WV]}[VG]V[PA]D{I|L} 7.883;6.3022;5.4736;4.1474;2.7663;1.7887;1.5563;1.2002;0.51049;0.19458 +;-;-;-;-;-;-;-;-;- + 335 + NaN NaN 149055.4 NaN 3947 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6145 36.599 NaN 277460 35 0 66421 0.261 -1 0 45 441.7880863208449 881.5616197084898 2 441.7881164550781 MULTI HCD FTMS 0 0 0 6142 101937.046875 0.8511349375158634 -2 0.056369781494140625 3 NaN NaN 2 [Y{M(Oxidation (M))|F}]{I|L} 3 -1 7.4473 0 0 0.84478 0 0 0 455.35724894116487 455.35724894116487 0.45757490560674974 0 0 0 0 0 0 0 0 [Y{M(Oxidation (M))|F}]{I|L} 0.84478 - 11 NaN NaN 125105.4 NaN 3948 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6146 36.602 NaN 144750 35 0 18229 0.261 -1 MPEKEPSVL 9 46 523.2652588307186 1044.5159647282371 2 523.2651977539062 MULTI HCD FTMS 0 0 0 6142 66426.1484375 0.6004693557516737 -7 0.16247940063476562 4 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 31.26834338654808 0.10542797264966089 2 V{I|L} 2 -1 22.206 0 0 2.126 0 0 814.3491078107437 0 814.3491078107437 0 8.253800256993953 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.126 + + 15 NaN NaN 119254.7 NaN 3949 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6147 36.606 NaN 173800 35 0 37564 0.261 + 25110 SAEQAKVVL 9 39 472.77420349232733 943.5338540514547 2 472.7743225097656 MULTI HCD FTMS 0 0 0 6142 111865.9765625 0.6620224419668794 -3 0.06959152221679688 5 Unmodified _SAEQAKVVL_ ENSG00000111678|ENST00000229281|C12orf57 28.494509381512117 0.11816142465008336 2 {[SA]|[TG]}EQAKVV{I|L} 9 0 + 50.741 0 0 5.3777 5.3777 88.858 0 0 0 5.6424927368725974 32.78180479789823 5.6424927368725974 11.760912590556813 0 1.4876954943324545 0 0 0 + + {[SA]|[TG]}EQAKVV{I|L};{[SA]|[TG]}[DV]NKVV{I|L};{[SA]|[TG]}[DV]GGKVV{I|L};{[SA]|[TG]}EQAVVK{I|L};{[SA]|[TG]}EQAVV{I|L}K;{[SA]|[TG]}[DV]NVVK{I|L};{[SA]|[TG]}[DV]NVV{I|L}K 5.3777;4.1312;3.1553;2.8605;2.3548;1.614;1.1084 +;-;-;-;-;-;- + 88 NaN NaN 130248.6 NaN 3950 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6148 36.609 NaN 78441 35 0 10826 0.261 -1 VDCGTEETSL 10 34 555.7344772004384 1109.4544014676767 2 555.734130859375 MULTI HCD FTMS 0 0 0 6142 33353.95703125 0.21077996714063163 -15 0.3491058349609375 6 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 6.2057823575117 0.44245551207394906 2 TS{I|L} 3 -1 28.188 0 0 2.5407 0 0 790.2813587873062 0 790.2813587873062 0 28.187587626244124 0 0 0 0 0 0.5 0 TS{I|L} 2.5407 + + 3 NaN NaN 98193.8 NaN 3951 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6149 36.612 NaN 46090 35 0 8075.5 0.261 + 28116 TIIDLLSDPL 10 25 550.3163099176379 1098.6180669020757 2 550.299072265625 MULTI HCD FTMS 0 0 0 6142 4895.19384765625 0.3846631127234967 1 -0.03975677490234375 7 Unmodified _TIIDLLSDPL_ REV__ENSG00000103356|ENST00000449606|EARS2;REV__ENST00000564987.1_1_16:23541198-23555881:-|nuORF;REV__nc|ENSG00000103356|Q5JPH6-2|EARS2 3.2813086475875832 0.45793521633868084 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102216.6 NaN 3952 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6150 36.616 NaN 30543 35 0 4746.7 0.261 -1 TATLHEPIM 9 24 514.7576965287152 1027.5008401242303 2 514.7575073242188 MULTI HCD FTMS 0 0 0 6142 11476.1474609375 0.07303745753829509 13 -0.30464935302734375 8 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 86298 NaN 3953 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6151 36.619 NaN 41506 35 0 8979.4 0.261 + 22140 QKAQTKEQ 8 20 480.75927926098234 959.5040055887647 2 481.71612548828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _QKAQTKEQ_ ENSG00000100345|ENST00000216181|MYH9;ENSG00000105357|ENST00000642316|MYH14;ENSG00000133026|ENST00000360416|MYH10;ENSG00000133392|ENST00000300036|MYH11;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133392|P35749-3|MYH11;nc|ENSG00000133392|P35749-4|MYH11 0.6903765706972694 0.5409681170271811 2 V[{M(Oxidation (M))|F}T] 3 7 10.458 0 0 1.0899 0 0 594.3438321041929 0 594.3438321041929 0 10.45757490560675 0 0 0 0 0 0 0 V[{M(Oxidation (M))|F}T] 1.0899 - 3 + NaN NaN 87828.8 NaN 3954 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6152 36.622 NaN 20878 35 0 6044.6 0.261 + 21881 QCRLCHCNVP 10 13 586.7588180332965 1171.503083133393 2 586.7591552734375 MULTI HCD FTMS 0 0 0 6142 15856.642578125 0.7581702013727674 3 -0.08282470703125 10 Unmodified _QCRLCHCNVP_ ENST00000422941.6_1_14:23607156-23612305:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95559.4 NaN 3955 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6153 36.625 NaN 36308 35 0 8719.1 0.261 + 14884 LKNKPLMRK 9 31 564.3573389524678 NaN 0 564.7930908203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _LKNKPLMRK_ REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1 0.5247636613948944 0.2927039108006614 2 Y 1 -1 3.0989 0 0 0.27505 0 0 813.703617258648 146.90926538638908 960.6128826450371 0 0 0 0 0 0 0 0 0 Y 0.27505 - 2 + NaN NaN 105577.8 NaN 3956 2195 6142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6155 36.631 NaN 217710 35 0 16515 0.327 -1 KMPKMKMPTF 10 59 418.88473716916974 1253.6323821077092 3 418.8850402832031 MULTI HCD FTMS 0 0 0 6154 101927.4453125 0.8389439169697968 -3 0.09612655639648438 1 Oxidation (M) _KMPKM(Oxidation (M))KMPTF_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 22.774965066868997 0.29808267786580567 2 KM 2 -1 25.019 0 0 1.9957 0 0 0 991.4736941848279 991.4736941848279 3.028871982441359 0 0 0 0 0.7059771852360797 0 0 0 KM 1.9957 + + 31 + NaN NaN 131525.7 NaN 3957 2196 6154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6156 36.635 NaN 64456 35 0 5840.3 0.261 -1 HPVLKEMEVQ 10 22 613.3160730684439 1224.6175932036876 2 613.818359375 MULTI HCD FTMS 0 0 0 6154 12861.12890625 0.07227479308564168 14 -0.3179588317871094 2 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 2 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4179171197874 888.4179171197874 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 5 + NaN NaN 95555.4 NaN 3958 2196 6154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6157 36.639 NaN 61435 35 0 8523 0.262 + -1 LPMVHQCV 8 34 500.24110746886186 998.4676620045237 2 500.24224853515625 MULTI HCD FTMS 0 0 0 6154 12629.0615234375 0.2825155890674715 17 -0.4073219299316406 3 Carbamidomethyl (C),Oxidation (M) _LPM(Oxidation (M))VHQC(Carbamidomethyl (C))V_ REV__ENSG00000203965|ENST00000371088|EFCAB7 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98541.6 NaN 3959 2196 6154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6159 36.644 NaN 921950 35 0 111600 0.327 + 1555 AYVHMVTHF 9 79 560.7657330135318 1119.5169130938634 2 560.7659912109375 MULTI HCD FTMS 0 0 0 6158 450718 0.4002721955367481 -11 0.2648200988769531 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 106.56 0 0 9.5188 9.5188 92.343 0 0 0 7.711440694835829 7.711440694835829 7.711440694835829 7.711440694835829 0 2.885151878060192 2 0.6109243748081782 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F} 9.5188;8.83;8.1789;6.1274;5.8439;5.1118;4.5245;4.504;3.9626;3.5805 +;+;-;-;-;-;-;-;-;- + 1197 + NaN NaN 225592.2 NaN 3960 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6160 36.648 NaN 148550 35 0 14601 0.261 + 27896 TEEDLDLVTL 10 36 574.2907273567691 1146.5669017803382 2 574.2907104492188 MULTI HCD FTMS 0 0 0 6158 62623.1015625 0.015259103549527375 45 -1.2214736938476562 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 2 EVT{I|L} 4 6 46.67 0 0 4.0704 0 0 686.3117542951187 0 686.3117542951187 0 23.48258770979733 0 0 0 0.4247425010840047 0 1.3494850021680094 0 EVT{I|L} 4.0704 - 21 NaN NaN 109948.4 NaN 3961 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6161 36.652 NaN 110210 35 0 11636 0.261 + 2533 DSSNNVILR 9 41 509.2698375729319 1016.5251222126639 2 509.26947021484375 MULTI HCD FTMS 0 0 0 6158 46124.06640625 0.4683825836534819 -3 0.06953048706054688 3 Unmodified _DSSNNVILR_ ENSG00000116985|ENST00000372827|BMP8B;ENSG00000183682|ENST00000331593|BMP8A 55.50274090549119 0.023872834264864425 2 {[DS]|[MA]|[CV]|TT}SN{[NV]|[RG]}{I|L}{I|L}R 9 0 + 57.413 0 0 5.648 5.648 87.963 0 0 0 50.42342188037523 16.478174818886373 16.478174818886373 9.208187539523749 0 1.7302046884880937 0 0.4247425010840047 0 + + {[DS]|[MA]|[CV]|TT}SN{[NV]|[RG]}{I|L}{I|L}R;{[DS]|[MA]|[CV]|TT}SGG{[NV]|[RG]}{I|L}{I|L}R 5.648;4.7421 +;- + 34 + NaN NaN 97865.7 NaN 3962 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6162 36.655 NaN 76322 35 0 9264.8 0.261 -1 RYMEVSGNL 9 28 542.7569143247312 1083.4992757162622 2 542.7582397460938 MULTI HCD FTMS 0 0 0 6158 35098.17578125 0.31276763689220854 17 -0.42395782470703125 4 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ ENSG00000183431|ENST00000373019|SF3A3 8.155526934196011 0.2891920862272901 2 S[NG]{I|L} 4 -1 21.198 0 0 1.9564 0 0 694.3107795180953 0 694.3107795180953 0 14.208187539523749 0 0 0 0.5 0 0 0 S[NG]{I|L} 1.9564 + + 6 NaN NaN 112092.4 NaN 3963 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6163 36.659 NaN 63188 35 0 5142.5 0.261 + 20817 PHPRHQTTE 9 38 551.7723028261279 NaN 0 551.7549438476562 PEAK HCD FTMS 0 0 0 6158 4500.84716796875 1 0 0 5 Unmodified _PHPRHQTTE_ chr1:143382868-144245238|213|21.6|0.0|21.04|-|0|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|3 4.3292370932331545 0.2742679634796037 2 MQVE 4 7 21.938 0 0 1.9916 0 0 218.1085940317899 393.18869959049067 611.2972936222806 0 0 0 0 0 0 0 0 0 MQVE 1.9916 - 29 + NaN NaN 101983 NaN 3964 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6164 36.662 NaN 45318 35 0 6491.4 0.261 + 29724 VDKYNQKA 8 28 483.25628905122846 964.498025169257 2 483.2571716308594 MULTI HCD FTMS 0 0 0 6158 23212.380859375 0.9127085846024946 -2 0.05298614501953125 6 Unmodified _VDKYNQKA_ tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1 4.3292370932331545 0.5355693454741696 2 [WR]Y 3 7 11.21 0 0 1.1623 0 0 0 456.2234285943969 456.2234285943969 11.210149894766703 0 0 0 0 0.4247425010840047 0 0 0 [WR]Y 1.1623 - 1 + NaN NaN 88259.8 NaN 3965 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6165 36.665 NaN 43736 35 0 6976.3 0.261 + 25037 SAAADSAVRL 10 33 480.75927926098234 959.5040055887647 2 480.75933837890625 MULTI HCD FTMS 0 0 0 6158 13307.6650390625 0.8798875488772644 -1 0.0132293701171875 7 Unmodified _SAAADSAVRL_ ENSG00000134759|ENST00000358232|ELP2;ENST00000535488.5_1_18:33709896-33718439:+|nuORF;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2 9.5439744041441 0.42184090036563754 2 {[SA]|[TG]}AA 4 6 16.198 0 0 1.6882 0 0 0 656.3356417291624 656.3356417291624 16.197887582883936 0 0 0 0 0 0 0 0 + {[SA]|[TG]}AA 1.6882 + + 8 + NaN NaN 104641.3 NaN 3966 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6166 36.669 NaN 68834 35 0 7487.3 0.261 + -1 MTTEPIKR 8 43 496.26540724812605 NaN 0 496.4856262207031 PEAK HCD FTMS 0 0 0 6158 8673.2041015625 0.8900434631415123 -1 0.0132293701171875 8 Oxidation (M) _M(Oxidation (M))TTEPIKR_ REV__CAMTA1|p.I777Sfs*57|1|0.12|ENSG00000171735|chr1:7664875-7664875|G/-|frameshift_variant;REV__ENSG00000171735|ENST00000303635|CAMTA1;REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 4.75600775471527 0.38822285293237185 2 P 1 -1 2.7642 0 0 0.27907 0 0 415.2930692796521 475.1515291803344 890.4445984599865 0 0 0 0 0 0 0 0 0 P 0.27907 + + 4 + NaN NaN 114710.3 NaN 3967 2197 6158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6168 36.674 NaN 1335300 35 0 113770 0.327 + 9018 HPEKLATVL 9 87 504.2977948624576 1006.5810367917152 2 504.2980041503906 MULTI HCD FTMS 0 0 0 6167 870028.9375 0.3872066450906278 7 -0.15616989135742188 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 79.59630418116434 0.005983006570063981 2 {[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L} 9 8 + 48.114 0 0 4.78 4.78 85.142 0 0 0 17.904849854573683 -2.5970469684341424 -2.5970469684341424 7.703489857067396 0 0 2 1.4291746928241125 0 {[TV]|[{I|L}S]}[{I|L}A]KEPH{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]HTV{I|L};{[TV]|[{I|L}S]}[{I|L}A]KEP{I|L}H;{[TV]|[{I|L}S]}[{I|L}A]KE{I|L}PH;{[TV]|[{I|L}S]}[{I|L}A][PG]THV{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]TVH{I|L};H{I|L}VA{[DS]|[MA]|[CV]|TT}[PG]V{I|L};{[TV]|[{I|L}S]}[{I|L}A]K{I|L}EPH;[{I|L}A]{[TV]|[{I|L}S]}KEPH{I|L};{[TV]|[{I|L}S]}[{I|L}A][PG]TV{I|L}H 4.78;4.0147;4.0081;3.012;2.9912;2.9602;2.6857;2.3132;2.2044;2.1884 -;-;-;-;-;-;-;-;-;- 935 NaN NaN 285712.1 NaN 3968 2198 6167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6169 36.678 NaN 23649 35 0 5507.3 0.261 + 9362 HPSVDQKQIE 10 17 590.8014553400398 1179.5883577468794 2 590.801025390625 MULTI HCD FTMS 0 0 0 6167 8722.7255859375 0.46393109815752465 1 -0.02318572998046875 2 Unmodified _HPSVDQKQIE_ ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1 5.731851221503515 0.44496410492002586 2 S{[ES]|[DT]|[{I|L}C]} 3 8 19.705 0 0 1.6705 0 0 858.4440785138687 0 858.4440785138687 0 19.7049999164468 0 0 0 0.5 0 0.4247425010840047 0 S{[ES]|[DT]|[{I|L}C]} 1.6705 - 2 NaN NaN 83501.8 NaN 3969 2198 6167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6170 36.682 NaN 69738 35 0 7424.4 0.263 + 2515 DSKTKPVY 8 26 469.25338689498113 936.4922208567623 2 469.253173828125 MULTI HCD FTMS 0 0 0 6167 30505.3984375 1 0 0 3 Unmodified _DSKTKPVY_ tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1 5.760428011301431 0.5334459684533844 2 Y 1 7 16.99 0 0 1.8142 0 0 755.4185036710186 0 755.4185036710186 0 12.385606273598313 0 0 0 0 0 0 0 + Y 1.8142 + + 7 + NaN NaN 97900.9 NaN 3970 2198 6167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6171 36.685 NaN 48710 35 0 5068.8 0.261 + 20053 NYIKRNWRI 9 36 421.57543540392237 1261.7044768119672 3 421.5753479003906 MULTI HCD FTMS 0 0 0 6167 21090.080078125 0.12035987668010384 39 -1.0310478210449219 4 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 1.0714618166137932 0.3428945748894048 2 V 1 9 3.0989 0 0 0.24562 0 0 723.7969583566922 435.81101404361567 1159.607972400308 0 0 0 0 0 0 0 0 0 V 0.24562 - 3 + NaN NaN 99167.5 NaN 3971 2198 6167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6172 36.688 NaN 61952 35 0 9480.6 0.261 + 27599 TAGIIGVNR 9 31 450.76646922538 899.51838551756 2 450.76605224609375 MULTI HCD FTMS 0 0 0 6167 27003.53125 1 0 0 5 Unmodified _TAGIIGVNR_ CLTC-VMP1|1|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;ENSG00000141367|ENST00000269122|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC 14.838274106304384 0.23215694253501695 2 [WR][R{I|L}][RN] 6 6 + 8.9254 0 0 0.99225 0.99225 83.309 0 0 0 7.331655954731248 7.331655954731248 7.331655954731248 8.92544976785331 0 0.5 0 0 0 [WR][R{I|L}][RN] 0.99225 - 10 + NaN NaN 95347.6 NaN 3972 2198 6167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6173 36.692 NaN 59004 35 0 6602.9 0.261 -1 SVTVSDPEM 9 31 490.71594949245684 NaN 0 490.7149658203125 PEAK HCD FTMS 0 0 0 6167 6663.005859375 0.5316407168906304 1 -0.02318572998046875 6 Oxidation (M) _SVTVSDPEM(Oxidation (M))_ ENSG00000219545|ENST00000682710|UMAD1;ENST00000406829.2_2_7:7812042-7917166:+|nuORF 10.073929032068715 0.24642998803896465 2 SD 2 -1 14.966 0 0 1.528 0 0 386.2168588464387 388.11753259830317 774.3343914447419 0 0 0 0 0 0.7887254899964358 0 0 0 SD 1.528 + + 3 + NaN NaN 91255 NaN 3973 2198 6167 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6175 36.697 NaN 428350 35 0 123990 0.327 + 16342 LRQKYLERI 9 52 406.9154348540103 1217.7244751622309 3 406.9154357910156 MULTI HCD FTMS 0 0 0 6174 150174.71875 0.38189184309409896 7 -0.15287399291992188 1 Unmodified _LRQKYLERI_ REV__ENSG00000008226|ENST00000308059|DLEC1;REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF;REV__nc|ENSG00000008226|Q9Y238-2|DLEC1;REV__nc|ENSG00000008226|Q9Y238-3|DLEC1 8.97624648632007 0.2828035605319045 2 KY 2 -1 25.969 0 0 2.1326 0 0 0 923.5421731624182 923.5421731624182 3.0102999566398125 0 0 0 0 0.5 0 0 0 KY 2.1326 + + 15 + NaN NaN 151328.2 NaN 3974 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6176 36.701 NaN 91619 35 0 6598.2 0.261 + 3948 EQEYKRWD 8 37 577.269118039455 1152.5236831457098 2 578.2877807617188 MULTI HCD FTMS 0 0 0 6174 2439.45068359375 0.36866602757603983 -4 0.10601043701171875 2 Unmodified _EQEYKRWD_ REV__ENSG00000085760|ENST00000263629|MTIF2 4.3292370932331545 0.5355693454741696 2 E[YC(Carbamidomethyl (C))]DT 5 -1 23.456 0 0 2.0352 0 0 0 481.2777193658813 481.2777193658813 20.981362441963327 0 0 0 0 0 0 0.4247425010840047 0 E[YC(Carbamidomethyl (C))]DT 2.0352 - 16 + NaN NaN 98025.1 NaN 3975 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6177 36.705 NaN 121970 35 0 36576 0.261 -1 RYLEKPMEI 9 32 597.8131717482389 1193.6117905632777 2 597.8134765625 MULTI HCD FTMS 0 0 0 6174 50897.73828125 0.12031816475027884 38 -1.0078620910644531 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 8.155526934196011 0.2891920862272901 2 KE 2 -1 14.464 0 0 1.2118 0 0 504.2269925637581 429.2280367486938 933.4550293124519 0 0 0 0 0 0.5 0 0 0 KE 1.2118 - 15 + NaN NaN 105532.3 NaN 3976 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6178 36.708 NaN 74966 35 0 20418 0.261 -1 FPDSEPPRM 9 20 546.245054301141 1090.4755556690818 2 546.2450561523438 MULTI HCD FTMS 0 0 0 6174 47394.3203125 1 0 0 4 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 26.268140514670165 0.13340543277302316 2 S{M(Oxidation (M))|F}ERDPE 7 -1 61.274 0 0 5.619 0 0 212.07979018379064 0 212.07979018379064 0 61.273816809939774 0 0 0 1 0 0.3807196863200844 0 S{M(Oxidation (M))|F}ERDPE 5.619 - 81 NaN NaN 102106.4 NaN 3977 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6179 36.712 NaN 69504 35 0 7775 0.262 + 27577 TADVTSAVM 9 38 455.7128949584814 909.4112369837628 2 455.7128601074219 MULTI HCD FTMS 0 0 0 6174 31736.31640625 0.467251707774135 -4 0.10601043701171875 5 Oxidation (M) _TADVTSAVM(Oxidation (M))_ ENSG00000136021|ENST00000360820|SCYL2 61.357469665136826 0.01568246967499496 2 TSAV{M(Oxidation (M))|F} 5 4 65.433 0 0 7.1951 0 0 386.17906386543126 0 386.17906386543126 0 65.43305028184122 0 0 0 2.4247425010840047 0 0.7742275032520141 0 + TSAV{M(Oxidation (M))|F} 7.1951 + + 52 NaN NaN 102946.3 NaN 3978 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6180 36.715 NaN 51553 35 0 10224 0.261 + -1 STTQSCFSI 9 28 515.7286768947597 1029.4428008563193 2 515.7291870117188 MULTI HCD FTMS 0 0 0 6174 18921.271484375 0.5931742859562305 -17 0.4052314758300781 6 Carbamidomethyl (C) _STTQSC(Carbamidomethyl (C))FSI_ REV__ENSG00000162522|ENST00000401073|KIAA1522;REV__nc|ENSG00000162522|Q9P206-3|NHSL3;REV__nc|ENSG00000162522|Q9P206-4|NHSL3;REV__nc|ENSG00000162522|Q9P206|NHSL3 5.296884461304476 0.3108627248283497 2 S{I|L} 2 -1 24.776 0 0 2.4068 0 0 811.314745017775 0 811.314745017775 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 S{I|L} 2.4068 + + 2 NaN NaN 103894.6 NaN 3979 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6181 36.718 NaN 69456 35 0 13850 0.261 + -1 YVDRISAM 8 35 485.73706460000875 969.4595762668175 2 485.7376708984375 MULTI HCD FTMS 0 0 0 6174 19177.501953125 0.5618904124734202 -5 0.12255477905273438 7 Oxidation (M) _YVDRISAM(Oxidation (M))_ REV__ENST00000466920.5_1_8:67344751-67356688:+|nuORF 12.531546534597751 0.5015908124873912 2 A{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.1945 0 0 733.3769937246285 0 733.3769937246285 0 30.969100130080562 0 0 0 1 0 0 0 A{M(Oxidation (M))|F} 3.1945 + + 9 + NaN NaN 95056 NaN 3980 2199 6174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6183 36.723 NaN 343970 35 0 51088 0.327 + -1 YVHPCIDSG 9 68 524.2320675553719 1046.4495821775438 2 525.2469482421875 MULTI HCD FTMS 0 0 0 6182 9475.048828125 0.7509456042463377 3 -0.05377960205078125 1 Carbamidomethyl (C) _YVHPC(Carbamidomethyl (C))IDSG_ REV__ENST00000442120.1_1_7:65670391-65670878:+|nuORF 13.50788311687929 0.24365122550260465 2 [YV]H{M(Oxidation (M))|F}VTH 7 -1 39.658 0 0 3.7898 0 0 0 160.02396027722298 160.02396027722298 16.012969751618087 0 0 0 0 0 2 0.3494850021680094 0 [YV]H{M(Oxidation (M))|F}VTH 3.7898 - 167 NaN NaN 134803.8 NaN 3981 2200 6182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6184 36.728 NaN 99225 35 0 19176 0.261 -1 MVYIFIQM 8 41 530.7622227240029 NaN 0 530.7623901367188 PEAK HCD FTMS 0 0 0 6182 34106.48046875 0.3625622537174505 9 -0.19530487060546875 2 Oxidation (M) _MVYIFIQM(Oxidation (M))_ ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5 10.183394434864962 0.38822285293237185 2 W 1 -1 10.485 0 0 0.98957 0 0 99.07037153828374 771.31856426163 870.3889357999137 0 0 0 0 0 0.5 0 0 0 W 0.98957 - 13 + NaN NaN 97831 NaN 3982 2200 6182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6185 36.731 NaN 125940 35 0 38042 0.261 + -1 VCFMSLPEMFR 11 37 464.5435253750862 1390.6087467254586 3 464.87774658203125 MULTI HCD FTMS 0 0 0 6182 27546.048828125 0.9750362089145483 -2 0.04969024658203125 3 2 Oxidation (M) _VCFM(Oxidation (M))SLPEM(Oxidation (M))FR_ REV__LRRN1|p.A400V|1|0.21|ENSG00000175928|chr3:3845840-3845840|C/T|missense_variant 2.2527281973983926 0.4090409658946738 2 {M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 4 -1 31.938 0 0 2.2967 0 0 793.3514357897149 0 793.3514357897149 0 25.996075289514096 0 0 0 1 0 0 0 {M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 2.2967 - 34 + NaN NaN 110375.6 NaN 3983 2200 6182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6186 36.735 NaN 55698 35 0 5171.3 0.261 + 23923 RTNPNSGDFRF 11 34 437.5459707588566 1309.6160828767697 3 437.8806457519531 MULTI HCD FTMS 0 0 0 6182 23627.318359375 0.7419085109763903 -7 0.18888473510742188 4 Unmodified _RTNPNSGDFRF_ ENSG00000131263|ENST00000332687|RLIM 9.530100786504857 0.37404633115274044 2 GDP 3 9 16.198 0 0 1.2368 0 0 669.3212353199323 368.1677645318969 1037.4889998518292 0 0 0 0 0 0 0 0 0 GDP 1.2368 - 10 + NaN NaN 106625.8 NaN 3984 2200 6182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6187 36.738 NaN 16512 35 0 4570.9 0.261 -1 LFCSMSHSY 9 14 566.7254003879008 1131.4362478426015 2 566.7252197265625 MULTI HCD FTMS 0 0 0 6182 6756.54541015625 0.3512751037445942 -8 0.20210647583007812 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LFCSM(Oxidation (M))SHSY_ ENST00000581067.1_1_18:5237365-5237662:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103581.8 NaN 3985 2200 6182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6189 36.743 NaN 735090 35 0 98452 0.327 + 23642 RPTSVDPAL 9 51 478.26399625755926 954.5134395819185 2 478.2639465332031 MULTI HCD FTMS 0 0 0 6188 462851.625 0.9765915431683899 -1 0.0198516845703125 1 Unmodified _RPTSVDPAL_ ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENST00000599253.1_1_19:48248882-48249496:+|nuORF 38.175570920033316 0.07371992880350783 2 [PA][R{I|L}]DEAA{I|L} 9 6 + 54.772 0 0 5.7382 5.7382 84.813 0 0 0 0.9717340404973385 18.328183540108895 0.9717340404973385 3.0102999566398125 0 0.6861818737241735 1.5228787452803376 0.3807196863200844 0 [PA][R{I|L}]DEAA{I|L};[PA]D[R{I|L}]EAA{I|L};[PA][R{I|L}]DS[PS]{I|L};[RP][{I|L}A]DEAA{I|L};[PA]D[R{I|L}]S[PS]{I|L};[PA][R{I|L}]D[VG]D{I|L};[PA]D[R{I|L}][VG]D{I|L};[RP][{I|L}A]DS[PS]{I|L};[RP][{I|L}A]D[VG]D{I|L} 5.7382;5.4228;4.506;4.2262;4.1907;3.6442;3.3288;2.9941;2.1322 -;-;-;-;-;-;-;-;- 226 NaN NaN 196764.2 NaN 3986 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6190 36.748 NaN 118300 35 0 25216 0.261 + 25111 SAEQAKVVL 9 37 472.77420349232733 943.5338540514547 2 472.7739562988281 MULTI HCD FTMS 0 0 0 6188 95294.4140625 0.5639519954327863 3 -0.06011199951171875 2 Unmodified _SAEQAKVVL_ ENSG00000111678|ENST00000229281|C12orf57 22.65808497894818 0.16459551161911185 2 {[QS]|[NT]}AAEKVV{I|L} 9 4 + 55.111 0 0 5.8409 5.8409 91.316 0 0 0 5.6424927368725974 38.913187455970544 5.6424927368725974 21.46636480286716 0 1.6237125054200234 0 0 0 {[QS]|[NT]}AAEKVV{I|L};{[QS]|[NT]}AAV{[SA]|[TG]}VV{I|L};{[QS]|[NT]}AAEVVK{I|L};{[QS]|[NT]}[Q{I|L}]{[SA]|[TG]}VV{I|L};{[QS]|[NT]}AAV{NN|[MP]|[D{I|L}]|[EV]}K{I|L};{[QS]|[NT]}[Q{I|L}]{NN|[MP]|[D{I|L}]|[EV]}K{I|L} 5.8409;3.5658;3.0047;2.0861;1.7055;0.23146 -;-;-;-;-;- 59 NaN NaN 101278.6 NaN 3987 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6191 36.751 NaN 174310 35 0 19956 0.261 -1 MVDGKPVNL 9 55 494.7601789624263 987.5058049916527 2 494.7604064941406 MULTI HCD FTMS 0 0 0 6188 80117.7578125 0.907287871766411 -1 0.0198516845703125 3 Oxidation (M) _M(Oxidation (M))VDGKPVNL_ ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 38.175570920033316 0.07371992880350783 2 RKGDNN 6 -1 38.581 0 0 3.907 0 0 285.1678639142594 0 285.1678639142594 0 22.348819337950015 0 0 0 1.4247425010840047 0 0 0 RKGDNN 3.907 - 139 NaN NaN 122575 NaN 3988 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6192 36.755 NaN 177040 35 0 27402 0.261 -1 VDCGTEETSL 10 35 555.7344772004384 1109.4544014676767 2 555.7349243164062 MULTI HCD FTMS 0 0 0 6188 66447.171875 0.41991217687538984 -9 0.22195816040039062 4 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 13.042465956692817 0.38911719078024076 2 TS{I|L} 3 -1 38.188 0 0 3.442 0 0 790.2808461834234 0 790.2808461834234 0 32.70303756120384 0 0 0 1 0 0.5 0 TS{I|L} 3.442 + + 20 NaN NaN 120728.5 NaN 3989 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6193 36.758 NaN 45209 35 0 8934.7 0.262 + 8414 GYRHGVAR 8 25 458.24926011754195 914.4839673018839 2 458.24786376953125 MULTI HCD FTMS 0 0 0 6188 18486.771484375 0.933489690339358 2 -0.03392791748046875 5 Unmodified _GYRHGVAR_ REV__ENSG00000164404|ENST00000687138|GDF9 2.302733041254933 0.5385759549224092 2 R{I|L} 2 -1 8.5835 0 0 0.93862 0 0 263.1643394716089 379.1261080377563 642.2904475093652 0 0 0 0 0 0 0 0 0 R{I|L} 0.93862 - 10 + NaN NaN 83103.5 NaN 3990 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6194 36.761 NaN 32103 35 0 5610.5 0.261 + 1653 CCHLCHSDDM 10 31 582.190173737537 1162.3657945418738 2 582.1903686523438 MULTI HCD FTMS 0 0 0 6188 3074.69189453125 0.183631957635371 -6 0.15236663818359375 6 Unmodified _CCHLCHSDDM_ REV__ENSG00000099139|ENST00000674117|PCSK5;REV__nc|ENSG00000099139|Q92824|PCSK5 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95105.9 NaN 3991 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6195 36.765 NaN 53819 35 0 8157.7 0.261 -1 YDREKPMV 8 37 527.2549061247012 1052.4952593162022 2 527.7344360351562 MULTI HCD FTMS 0 0 0 6188 7601.1767578125 0.7637005800356929 -5 0.11260986328125 7 Oxidation (M) _YDREKPM(Oxidation (M))V_ ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4 4.3292370932331545 0.5355693454741696 2 N 1 -1 5.4846 0 0 0.5211 0 0 317.2645239103268 618.1820162408811 935.446540151208 0 0 0 0 0 0 0 0 0 N 0.5211 - 10 + NaN NaN 87854.5 NaN 3992 2201 6188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6198 36.777 NaN 1800600 35 0 191920 0.327 + 1556 AYVHMVTHF 9 107 560.7657330135318 1119.5169130938634 2 560.7659912109375 MULTI HCD FTMS 0 0 0 6197 917811.4375 0.815087037076096 -5 0.1034698486328125 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 109.75 0 0 9.8031 9.8031 91.312 0 0 0 4.542425094393252 9.13303128443836 4.542425094393252 4.542425094393252 0 2.9291746928241125 2 0.8851518780601924 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[HT]V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]AAPH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9.8031;9.3973;8.9873;6.107;6.1058;6.0613;5.8431;5.6866;5.2809;5.0372 +;-;+;-;-;-;-;-;-;- + 3858 + NaN NaN 358679.7 NaN 3993 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6199 36.781 NaN 189300 35 0 17243 0.263 -1 KMPKMKMPTF 10 51 418.88473716916974 1253.6323821077092 3 418.885009765625 MULTI HCD FTMS 0 0 0 6197 110433.75 0.9089575678720687 4 -0.10183334350585938 2 Oxidation (M) _KMPKM(Oxidation (M))KMPTF_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 22.774965066868997 0.29808267786580567 2 KM 2 -1 27.717 0 0 2.2109 0 0 0 991.4740036170083 991.4740036170083 5.726825097560422 0 0 0 0 0.6747425010840047 0 0 0 KM 2.2109 + + 23 + NaN NaN 121062.5 NaN 3994 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6200 36.785 NaN 128470 35 0 12233 0.261 + 2534 DSSNNVILR 9 43 509.2698375729319 1016.5251222126639 2 509.2697448730469 MULTI HCD FTMS 0 0 0 6197 79146.625 0.8037214320706555 3 -0.07258987426757812 3 Unmodified _DSSNNVILR_ ENSG00000116985|ENST00000372827|BMP8B;ENSG00000183682|ENST00000331593|BMP8A 79.59630418116434 0.005983006570063981 2 {[DS]|[MA]|[CV]|TT}SNNV{I|L}{I|L}R 9 0 + 58.166 0 0 5.722 5.722 88.129 0 0 0 52.592503013052934 16.478174818886373 16.478174818886373 9.208187539523749 0 1.5044321917401078 0 0.4247425010840047 0 + + {[DS]|[MA]|[CV]|TT}SNNV{I|L}{I|L}R;{[DS]|[MA]|[CV]|TT}SGGNV{I|L}{I|L}R 5.722;4.8162 +;- + 47 + NaN NaN 111226.1 NaN 3995 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6201 36.788 NaN 126480 35 0 11907 0.261 -1 DSEISLVETI 10 34 574.2907273567691 1146.5669017803382 2 574.2905883789062 MULTI HCD FTMS 0 0 0 6197 53948.24609375 0.013145338587842592 51 -1.3833198547363281 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DSEISLVETI_ ENST00000369816.4_1_6:80626550-80629188:-|nuORF 19.256988751693697 0.33098864134661865 2 EVT{I|L} 4 -1 41.67 0 0 3.6343 0 0 686.3116322248062 0 686.3116322248062 0 21.977437731477423 0 0 0 0.5 0 0.9247425010840047 0 EVT{I|L} 3.6343 - 19 NaN NaN 100689.3 NaN 3996 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6202 36.792 NaN 119970 35 0 17300 0.261 -1 SEMDTSVKF 9 35 530.2367643816877 1058.4589758301754 2 530.2369384765625 MULTI HCD FTMS 0 0 0 6197 56837.515625 0.6388553785738685 -4 0.08028411865234375 5 Oxidation (M) _SEM(Oxidation (M))DTSVKF_ ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 28.494509381512117 0.11816142465008336 2 {[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}DT[VS]K{M(Oxidation (M))|F} 9 -1 + 53.121 0 0 5.0187 5.0187 89.555 0 0 0 53.12137499549429 16.478174818886373 16.478174818886373 17.501225267833995 0 1.4247425010840047 0 0 0 {[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}DT[VS]K{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[TP]{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F} 5.0187;3.3653 +;- + 38 + NaN NaN 97075.4 NaN 3997 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6203 36.795 NaN 71128 35 0 5077.2 0.261 + 16229 LPWEDDKEA 9 32 551.7545075630616 1101.494462192923 2 551.7545776367188 MULTI HCD FTMS 0 0 0 6197 35725.05859375 0.7443568603193723 -1 0.007465362548828125 6 Unmodified _LPWEDDKEA_ ENST00000456917.1_1_21:26946366-26946426:+|nuORF 13.042465956692817 0.2476723265019929 2 EVQM{[CP]|[EA]} 6 6 53.333 0 0 4.8419 0 0 396.21129042793126 0 396.21129042793126 0 53.33281569033012 0 0 0 2.110924374808178 0 0.3807196863200844 0 EVQM{[CP]|[EA]} 4.8419 - 66 NaN NaN 107345.9 NaN 3998 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6204 36.798 NaN 38405 35 0 5070.4 0.261 -1 YLGIQLTRDM 10 21 613.3160730684439 1224.6175932036876 2 613.3156127929688 MULTI HCD FTMS 0 0 0 6197 24431.53515625 0.08280227295835152 20 -0.5258522033691406 7 Oxidation (M) _YLGIQLTRDM(Oxidation (M))_ L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|163|3|sense 1.1933415558491238 0.46898715808974617 2 V{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.85395 0 0 891.4380970685562 0 891.4380970685562 0 10.45757490560675 0 0 0 0 0 0 0 V{[ES]|[DT]|[{I|L}C]} 0.85395 - 1 NaN NaN 96207.9 NaN 3999 2203 6197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6206 36.803 NaN 89502 35 0 20081 0.327 + -1 MPYMLAEPVS 10 30 577.269118039455 1152.5236831457098 2 577.2696533203125 MULTI HCD FTMS 0 0 0 6205 25136.314453125 0.5197524452383327 3 -0.07564926147460938 1 Oxidation (M) _MPYM(Oxidation (M))LAEPVS_ REV__ENSG00000100985|ENST00000372330|MMP9 6.2057823575117 0.44245551207394906 2 MPY 3 -1 26.995 0 0 2.3422 0 0 0 758.3412569635374 758.3412569635374 26.994784489444967 0 0 0 0 0.3807196863200844 0 0 0 MPY 2.3422 + + 10 + NaN NaN 108187.7 NaN 4000 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6207 36.808 NaN 46122 35 0 12245 0.261 + -1 YYMWVHIK 8 24 578.288119783946 1154.5616866346918 2 579.293701171875 MULTI HCD FTMS 0 0 0 6205 24923.470703125 0.6094469985558559 8 -0.19818878173828125 2 Oxidation (M) _YYM(Oxidation (M))WVHIK_ REV__ENST00000519948.3_1_12:74932986-74933157:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107430.9 NaN 4001 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6208 36.811 NaN 44788 35 0 4856.3 0.264 + 20054 NYIKRNWRI 9 28 421.57543540392237 1261.7044768119672 3 421.5752868652344 MULTI HCD FTMS 0 0 0 6205 16698.208984375 0.09529572039048685 45 -1.2412757873535156 3 Unmodified _NYIKRNWRI_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 2.9952420565917617 0.3283108881486655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94265.2 NaN 4002 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6209 36.815 NaN 111760 35 0 19327 0.261 + 2667 DVGDEHPVL 9 35 490.73784605741224 979.4611391816245 2 490.7381286621094 MULTI HCD FTMS 0 0 0 6205 29634.1875 0.5844531879802679 -4 0.07996368408203125 4 Unmodified _DVGDEHPVL_ REV__ENSG00000090432|ENST00000264198|MUL1 10.823927491677226 0.26684000660059787 2 PV{I|L} 3 -1 31.198 0 0 3.1852 0 0 652.2447944771823 0 652.2447944771823 0 24.965802877348473 0 0 0 0.5 0 0 0 PV{I|L} 3.1852 + + 10 NaN NaN 104647.8 NaN 4003 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6210 36.818 NaN 36814 35 0 6196.3 0.261 + 22593 QTIPGHLAE 9 30 483.25628905122846 964.498025169257 2 483.2559509277344 MULTI HCD FTMS 0 0 0 6205 14715.4462890625 0.5786099338818921 5 -0.1153411865234375 5 Unmodified _QTIPGHLAE_ REV__ENST00000392185.7_2_6:158349714-158356999:+|nuORF 5.731851221503515 0.3075653528928475 2 T{M(Oxidation (M))|F} 2 -1 14.693 0 0 1.5234 0 0 698.4049903565601 0 698.4049903565601 0 2.245462655597093 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5234 - 17 + NaN NaN 95368.1 NaN 4004 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6211 36.821 NaN 47303 35 0 6259.1 0.261 + 21973 QEQEIEQRL 9 28 586.7987713307822 1171.5829897283643 2 586.7991333007812 MULTI HCD FTMS 0 0 0 6205 20246.318359375 0.9451411204220064 -1 0.02618408203125 6 Unmodified _QEQEIEQRL_ ENSG00000143614|ENST00000368655|GATAD2B;ENSG00000167491|ENST00000683918|GATAD2A;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A 8.155526934196011 0.2891920862272901 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{[QN]|[E{I|L}]|[KN]}EQ[R{I|L}] 9 0 + 20.123 0 0 1.7176 1.7176 84.988 0 0 0 16.143937264016873 7.147642715192507 7.147642715192507 9.208187539523752 0 0 0 0 0 + + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{[QN]|[E{I|L}]|[KN]}EQ[R{I|L}];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{[QN]|[E{I|L}]|[KN]}E[AG][R{I|L}];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[AG]{[QN]|[E{I|L}]|[KN]}EQ[R{I|L}] 1.7176;0.93166;0.93166 +;-;- + 26 + NaN NaN 86506.2 NaN 4005 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6212 36.825 NaN 16751 35 0 3053.9 0.261 + -1 DRHCHVKW 8 18 569.2730318637878 NaN 0 569.27392578125 PEAK HCD FTMS 0 0 0 6205 2681.32275390625 0.291579232085079 -2 0.033649444580078125 7 Carbamidomethyl (C) _DRHC(Carbamidomethyl (C))HVKW_ REV__ENSG00000011007|ENST00000613537|ELOA;REV__nc|ENSG00000011007|Q14241-1|ELOA 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87291.7 NaN 4006 2204 6205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6214 36.83 NaN 640590 35 0 60360 0.327 + 9019 HPEKLATVL 9 80 504.2977948624576 1006.5810367917152 2 504.2979431152344 MULTI HCD FTMS 0 0 0 6213 337978.0625 0.15041724022524885 14 -0.3770484924316406 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 63.960520009940105 0.0120409805053046 2 HPE 3 6 30.688 0 0 3.0487 0 0 0 640.4038790338499 640.4038790338499 -0.5423595621581256 0 -0.5423595621581256 0 0 0.5 0 0.25 0 + HPE 3.0487 + + 185 + NaN NaN 193618.7 NaN 4007 2205 6213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6215 36.834 NaN 479680 35 0 41156 0.261 + 26889 SYISRTNQL 9 68 541.2853847709828 1080.5562166087655 2 541.2855834960938 MULTI HCD FTMS 0 0 0 6213 163952.875 0.19051970470254115 -4 0.08662796020507812 2 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 121.34585337138759 0.001129813327125052 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L} 9 0 + 75.886 0 0 7.0228 7.0228 90.306 0 0 0 1.2356515897244549 1.2356515897244549 1.2356515897244549 9.208187539523749 0 2.9604093769761874 0 0.6382104921644451 1.579689690656103 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTN[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGG[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[HA]VGTNQ{I|L};{[QN]|[E{I|L}]|[KN]}[HA]RDD{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}[H{I|L}]NQ{I|L} 7.0228;6.1707;6.0563;5.2082;3.5508;2.1402;1.9075 +;-;-;-;-;-;- + 564 + NaN NaN 156443.6 NaN 4008 2205 6213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6216 36.838 NaN 119750 35 0 12639 0.263 + -1 GWPHQKGRIM 10 49 409.2130939799611 1224.6174525400834 3 409.2219543457031 MULTI HCD FTMS 0 0 0 6213 2901.214599609375 0.0193183794102974 20 -0.5195045471191406 3 Oxidation (M) _GWPHQKGRIM(Oxidation (M))_ REV__ENST00000420492.2_1_9:101369884-101370217:+|nuORF 3.5870582119611467 0.4563168352879256 2 EE 2 -1 23.271 0 0 1.9003 0 0 948.5063669442832 0 948.5063669442832 0 3.5391719390811716 0 0 0 0 0 0.3807196863200844 0 EE 1.9003 - 8 NaN NaN 100352.2 NaN 4009 2205 6213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6217 36.841 NaN 53791 35 0 5818.4 0.261 -1 ICDCNLKWL 9 36 582.7804417201891 1163.546330507178 2 582.78076171875 MULTI HCD FTMS 0 0 0 6213 23656.369140625 0.5289273597565689 -3 0.0601654052734375 4 Carbamidomethyl (C) _IC(Carbamidomethyl (C))DCNLKWL_ ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 6.2057823575117 0.30397260197431997 2 WK{I|L} 3 -1 31.198 0 0 2.6813 0 0 718.2783155188423 0 718.2783155188423 0 27.703037561203843 0 0 0 0.5 0 0 0 WK{I|L} 2.6813 - 4 NaN NaN 87773 NaN 4010 2205 6213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6218 36.845 NaN 16647 35 0 3542.7 0.261 -1 WATQYCSRA 9 14 571.757018942715 NaN 0 571.7568359375 PEAK HCD FTMS 0 0 0 6213 2898.2294921875 0.21484310441320711 -3 0.0601654052734375 5 Carbamidomethyl (C) _WATQYC(Carbamidomethyl (C))SRA_ ENSG00000068001|ENST00000357750|HYAL2 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82580.7 NaN 4011 2205 6213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6220 36.85 NaN 199300 35 0 51824 0.327 + 14863 LKKANKKQNF 10 48 406.9154348540103 1217.7244751622309 3 406.9153747558594 MULTI HCD FTMS 0 0 0 6219 64551.94140625 0.16415452670148648 14 -0.37701416015625 1 Unmodified _LKKANKKQNF_ ENSG00000008118|ENST00000361322|CAMK1G 3.876331618118854 0.45478566516190344 2 KY 2 9 25.217 0 0 2.0708 0 0 0 923.5433171139206 923.5433171139206 9.731975075880328 0 0 0 0 0.4247425010840047 0 0 0 KY 2.0708 - 5 + NaN NaN 133242.2 NaN 4012 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6221 36.854 NaN 85436 35 0 28596 0.261 -1 RYLEKPMEI 9 20 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 6219 44197.6015625 0.10447957976009023 45 -1.2379226684570312 2 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 1.4819007175156935 0.3397831423917744 2 V 1 -1 6.9897 0 0 0.58559 0 0 238.15140094865598 853.3720186822874 1091.5234196309434 0 0 0 0 0 0 0 0 0 V 0.58559 - 4 + NaN NaN 108541.3 NaN 4013 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6222 36.858 NaN 67239 35 0 6849.5 0.264 + 27578 TADVTSAVM 9 30 455.7128949584814 909.4112369837628 2 455.7127990722656 MULTI HCD FTMS 0 0 0 6219 45529.5 0.6703278463947041 3 -0.06893539428710938 3 Oxidation (M) _TADVTSAVM(Oxidation (M))_ ENSG00000136021|ENST00000360820|SCYL2 46.020951573049366 0.037705236580089195 2 TSAV{M(Oxidation (M))|F} 5 4 62.691 0 0 6.8936 0 0 386.1798268048844 0 386.1798268048844 0 62.69077524932108 0 0 0 2.5 0 0.4247425010840047 0 + TSAV{M(Oxidation (M))|F} 6.8936 + + 44 NaN NaN 95987.2 NaN 4014 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6223 36.864 NaN 76844 35 0 17746 0.261 -1 FPDSEPPRM 9 24 546.245054301141 1090.4755556690818 2 546.2450561523438 MULTI HCD FTMS 0 0 0 6219 43840.6796875 0.9250196943100216 7 -0.18819427490234375 4 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 26.268140514670165 0.13340543277302316 2 ERDPE 5 -1 49.38 0 0 4.5283 0 0 446.18040663886876 0 446.18040663886876 0 42.39069071968309 0 0 0 1 0 0.3807196863200844 0 ERDPE 4.5283 - 32 NaN NaN 105084.3 NaN 4015 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6224 36.867 NaN 68026 35 0 10932 0.261 -1 MMDRMFAL 8 29 515.7286768947597 1029.4428008563193 2 515.7291870117188 MULTI HCD FTMS 0 0 0 6219 16142.5556640625 0.5060626574406591 -10 0.21912765502929688 5 Oxidation (M) _MMDRM(Oxidation (M))FAL_ ADC-ISOC1|1|fusion;ENSG00000066583|ENST00000173527|ISOC1 7.910154910731844 0.5302565402355366 2 A{I|L} 2 -1 20.969 0 0 2.0369 0 0 827.3121815412125 0 827.3121815412125 0 10.511525224473813 0 0 0 0 0 0 0 A{I|L} 2.0369 + + 4 NaN NaN 102445.7 NaN 4016 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6225 36.871 NaN 51359 35 0 11052 0.261 + -1 YVDRISAM 8 29 485.73706460000875 969.4595762668175 2 485.7367248535156 MULTI HCD FTMS 0 0 0 6219 33366.8671875 0.9776311227998654 2 -0.045764923095703125 6 Oxidation (M) _YVDRISAM(Oxidation (M))_ REV__ENST00000466920.5_1_8:67344751-67356688:+|nuORF 7.910154910731844 0.5302565402355366 2 A{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.1168 0 0 733.3774592019669 0 733.3774592019669 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 3.1168 + + 5 NaN NaN 94204.6 NaN 4017 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6226 36.874 NaN 53897 35 0 8307.7 0.261 -1 VAHWCVMT 8 32 481.71604271070515 NaN 0 481.7155456542969 PEAK HCD FTMS 0 0 0 6219 11075.2724609375 0.6420062541536796 -2 0.046405792236328125 7 Oxidation (M) _VAHWCVM(Oxidation (M))T_ ENSG00000260903|ENST00000562532|XKR7;XKR7|p.W342C|1|0.09|ENSG00000260903|chr20:31996743-31996743|G/T|missense_variant 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85510.7 NaN 4018 2206 6219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6228 36.879 NaN 455430 35 0 72169 0.327 + 35163 YVHMVTHF 8 71 525.2473454605481 1048.4801379878961 2 525.247314453125 MULTI HCD FTMS 0 0 0 6227 116297.421875 0.8391706511958436 -3 0.07564926147460938 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 98.80718514221951 0.03801807386884047 2 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 84.123 0 0 8.0233 8.0233 96.231 0 0 0 4.38039076304328 4.38039076304328 4.38039076304328 37.95880017344075 0 2.4247425010840047 2 0.7302046884880937 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F} 8.0233;4.4029;3.9005 +;-;- + 321 NaN NaN 152546.9 NaN 4019 2207 6227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6229 36.883 NaN 166390 35 0 9897.5 0.261 + 23924 RTNPNSGDFRF 11 67 437.5459707588566 1309.6160828767697 3 437.54608154296875 MULTI HCD FTMS 0 0 0 6227 46572.24609375 1 0 0 2 Unmodified _RTNPNSGDFRF_ ENSG00000131263|ENST00000332687|RLIM 9.067553249909363 0.3780765230043537 2 [{M(Oxidation (M))|F}E]EEKYY 7 11 26.687 0 0 2.0378 0 0 0 318.15607629947505 318.15607629947505 15.004632150221225 0 0 0 0 0 0 0.4247425010840047 0 [{M(Oxidation (M))|F}E]EEKYY 2.0378 - 78 + NaN NaN 122804.5 NaN 4020 2207 6227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6230 36.887 NaN 28667 35 0 3909.8 0.261 -1 EHQGCRCW 8 26 566.7254003879008 1131.4362478426015 2 566.7256469726562 MULTI HCD FTMS 0 0 0 6227 18039.494140625 0.9378794622208426 -1 0.02924346923828125 3 2 Carbamidomethyl (C) _EHQGC(Carbamidomethyl (C))RC(Carbamidomethyl (C))W_ ENST00000397786.6_1_17:60060004-60060088:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90707.1 NaN 4021 2207 6227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6231 36.89 NaN 43810 35 0 8599.4 0.261 + -1 YCMIPFCCH 9 25 587.2217758791284 NaN 0 587.2210083007812 PEAK HCD FTMS 0 0 0 6227 11795.3212890625 0.8014269003054184 -4 0.10183334350585938 4 Carbamidomethyl (C) _YCMIPFC(Carbamidomethyl (C))CH_ REV__ENST00000510318.5_1_8:12953202-12953370:-|nuORF 0.6014990680409731 0.29233206172879045 2 {I|L}E 2 -1 10.969 0 0 0.93559 0 0 515.0501058580629 412.23056970767817 927.2806755657411 0 0 0 0 0 0 0 0 0 {I|L}E 0.93559 - 4 + NaN NaN 88380.3 NaN 4022 2207 6227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6233 36.896 NaN 259670 35 0 36286 0.327 + 23643 RPTSVDPAL 9 41 478.26399625755926 954.5134395819185 2 478.263916015625 MULTI HCD FTMS 0 0 0 6232 141350.859375 0.29824256074548583 6 -0.17229461669921875 1 Unmodified _RPTSVDPAL_ ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENST00000599253.1_1_19:48248882-48249496:+|nuORF 23.789781309258295 0.1548179064208189 2 [RP]T[VS]DPA{I|L} 9 0 + 46.348 0 0 4.8557 4.8557 91.149 0 0 0 0.9151498112134959 38.90092514408778 0.9151498112134959 46.348200093054714 0 1 0 0.3494850021680094 0 + + [RP]T[VS]DPA{I|L} 4.8557 + + 71 NaN NaN 113803.8 NaN 4023 2208 6232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6234 36.9 NaN 298200 35 0 44330 0.261 -1 MEEEAGQTSI 10 57 555.7344772004384 1109.4544014676767 2 555.73486328125 MULTI HCD FTMS 0 0 0 6232 130422.4609375 0.8242033173170491 -2 0.045764923095703125 2 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 13.614867670302875 0.3837631382804675 2 TS{I|L} 3 -1 38.188 0 0 3.442 0 0 790.2782005993126 0 790.2782005993126 0 21.699944407693526 0 0 0 1 0 0.5 0 TS{I|L} 3.442 + + 148 NaN NaN 135714.2 NaN 4024 2208 6232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6235 36.904 NaN 168850 35 0 20061 0.262 + 24771 RYPDNLKHLY 10 47 440.2349812346662 1317.6831143041986 3 440.2349548339844 MULTI HCD FTMS 0 0 0 6232 82818.1640625 1 0 0 3 Unmodified _RYPDNLKHLY_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 28.181266145913348 0.2479683941310927 2 [YR][DP]N{I|L}KH{I|L}Y 10 0 + 49.085 0 0 3.7251 3.7251 89.845 0 0 0 6.249387366082999 49.085390679490075 6.249387366082999 49.085390679490075 0 1.742992819099939 0 0.5 0 + + [YR][DP]N{I|L}KH{I|L}Y 3.7251 + + 32 NaN NaN 124305.4 NaN 4025 2208 6232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6236 36.907 NaN 238160 35 0 29578 0.261 -1 ECHVTPEL 8 42 492.7263237469451 983.4380945606903 2 492.7265930175781 MULTI HCD FTMS 0 0 0 6232 80114.1328125 0.5175395308283633 -2 0.045764923095703125 4 Carbamidomethyl (C) _EC(Carbamidomethyl (C))HVTPEL_ ENSG00000023516|ENST00000025301|AKAP11 30.224811164608877 0.3565035853404968 2 E{I|L} 2 -1 29.464 0 0 2.996 0 0 723.3012233552557 0 723.3012233552557 0 16.276362525516532 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E{I|L} 2.996 + + 70 NaN NaN 117061.6 NaN 4026 2208 6232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6237 36.91 NaN 96147 35 0 22931 0.261 + 8843 HLIVNNNQL 9 31 532.796310754197 1063.5780685751938 2 532.7958984375 MULTI HCD FTMS 0 0 0 6232 22549.4375 1 0 0 5 Unmodified _HLIVNNNQL_ ENSG00000156564|ENST00000338305|LRFN2 3.944395688203298 0.32111559684428237 2 HV{I|L} 3 6 23.188 0 0 2.1801 0 0 696.3527699201187 0 696.3527699201187 0 16.197887582883936 0 0 0 0 0 0 0 HV{I|L} 2.1801 - 6 NaN NaN 98592.4 NaN 4027 2208 6232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6238 36.914 NaN 9234.9 35 0 2780.3 0.261 -1 LLLLCTVVYF 10 10 620.8525390625 NaN 0 620.8525390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _LLLLC(Carbamidomethyl (C))TVVYF_ ENSG00000145879|ENST00000274565|SPINK7 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85067.4 NaN 4028 2208 6232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6240 36.919 NaN 1976000 35 0 220510 0.327 + 1557 AYVHMVTHF 9 95 560.7657330135318 1119.5169130938634 2 560.7660522460938 MULTI HCD FTMS 0 0 0 6239 1037524.875 0.921401762610413 1 -0.029895782470703125 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 161.8943921545576 8.236690082142223E-09 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 120.84 0 0 10.794 10.794 96.661 0 0 0 84.67925002484726 13.46787486224656 13.46787486224656 15 0 3.079689690656103 2 0.872363747448347 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};AYVH[HS]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]AH[PA]{M(Oxidation (M))|F} 10.794;9.4545;9.2818;6.7765;6.528;6.394;6.3558;6.0511;5.8165;5.5534 +;-;+;-;-;-;-;-;-;- + 3377 + NaN NaN 382005.2 NaN 4029 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6241 36.923 NaN 205840 35 0 15602 0.264 -1 KMPKMKMPTF 10 66 418.88473716916974 1253.6323821077092 3 418.8849792480469 MULTI HCD FTMS 0 0 0 6239 88294.5859375 0.7267346448890974 10 -0.2882232666015625 2 Oxidation (M) _KMPKM(Oxidation (M))KMPTF_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 13.51866281300042 0.3846630060559883 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7541 0 0 1088.5537210743091 0 1088.5537210743091 0 0.7783248807594845 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7541 + + 26 + NaN NaN 129182.9 NaN 4030 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6242 36.927 NaN 233050 35 0 32710 0.261 -1 VYTRHMTWI 9 53 408.2061809579129 1221.5967134739387 3 408.20623779296875 MULTI HCD FTMS 0 0 0 6239 100575.3359375 1 0 0 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 16.565877749689598 0.21723083036893404 2 VY 2 -1 42.206 0 0 3.455 0 0 0 956.4392509444567 956.4392509444567 16.237125054200234 0 0 0 0 0.4247425010840047 2 0 0 VY 3.455 + + 14 + NaN NaN 119694.7 NaN 4031 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6243 36.93 NaN 92579 35 0 10704 0.261 -1 MVDGKPVNL 9 42 494.7601789624263 987.5058049916527 2 494.76031494140625 MULTI HCD FTMS 0 0 0 6239 40354.8515625 0.45699565725836633 7 -0.19545364379882812 4 Oxidation (M) _M(Oxidation (M))VDGKPVNL_ ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 27.628801355627647 0.12213550946336599 2 D{NN|[MP]|[D{I|L}]|[EV]} 3 -1 19.705 0 0 1.9954 0 0 626.3732777326187 0 626.3732777326187 0 9.247425010840049 0 0 0 0.9247425010840047 0 0 0 D{NN|[MP]|[D{I|L}]|[EV]} 1.9954 - 68 NaN NaN 93169 NaN 4032 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6244 36.933 NaN 119630 35 0 14280 0.261 + 41 AATDEERLI 9 40 509.26359360674644 1016.5126342802929 2 509.262451171875 MULTI HCD FTMS 0 0 0 6239 59299.90625 0.767358423289462 -1 0.02317047119140625 5 Unmodified _AATDEERLI_ ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000533509.1_1_11:128855854-128936700:-|nuORF;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9-3|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32 27.628801355627647 0.12213550946336599 2 R{I|L}{I|L} 3 6 31.198 0 0 3.0691 0 0 616.2452870099625 0 616.2452870099625 0 13.750612633916997 0 0 0 0.5 0 0 0 + R{I|L}{I|L} 3.0691 + + 57 NaN NaN 108972.3 NaN 4033 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6245 36.937 NaN 14730 35 0 3998.6 0.261 -1 WMHLEDIML 9 16 602.2802124023438 NaN 0 602.2802124023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WM(Oxidation (M))HLEDIML_ L1MB3_dup15674|chr19:3124440-3124948:-|1.03412094428896|0.2336207413901935|2.15|520.0|9|3|sense 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86695.2 NaN 4034 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6246 36.94 NaN 49396 35 0 7891.9 0.262 + 26443 STMRNMLF 8 23 500.24110746886186 998.4676620045237 2 500.22613525390625 MULTI HCD FTMS 0 0 0 6239 6430.1083984375 0.14384329814063684 27 -0.7561416625976562 7 Unmodified _STMRNMLF_ REV__ENSG00000214944|ENST00000513042|ARHGEF28;REV__nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;REV__nc|ENSG00000214944|Q8N1W1-6|ARHGEF28 0.6903765706972694 0.5409681170271811 2 EY 2 -1 6.1979 0 0 0.62074 0 0 164.12899120549872 539.2117403619749 703.3407315674735 0 0 0 0 0 0 0 0 0 EY 0.62074 - 9 + NaN NaN 89381.7 NaN 4035 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6247 36.943 NaN 41024 35 0 5996.1 0.261 -1 RFNNFMLY 8 30 560.7657330135318 1119.5169130938634 2 563.8027954101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _RFNNFM(Oxidation (M))LY_ ENSG00000167633|ENST00000391728|KIR3DL1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92127.5 NaN 4036 2209 6239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6249 36.949 NaN 430320 35 0 104970 0.327 + 13077 KYLEERAMRQF 11 40 490.92211440140693 1469.7445138044209 3 490.92242431640625 MULTI HCD FTMS 0 0 0 6248 141560.578125 0.9673946214264374 -1 0.029895782470703125 1 Unmodified _KYLEERAMRQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 13.534932898082838 0.33915209766063664 2 KY{[QN]|[E{I|L}]|[KN]}ER 6 5 27.708 0 0 1.8852 0 0 0 648.2915133111936 648.2915133111936 16.73902187720806 0 0 0 0 0.3807196863200844 0 0 0 + KY{[QN]|[E{I|L}]|[KN]}ER 1.8852 + + 30 + NaN NaN 144974.8 NaN 4037 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6250 36.953 NaN 106860 35 0 12198 0.261 + 27897 TEEDLDLVTL 10 32 574.2907273567691 1146.5669017803382 2 574.291015625 MULTI HCD FTMS 0 0 0 6248 46287.22265625 0.011278609744789392 58 -1.6097984313964844 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 2 EVT{I|L} 4 6 46.67 0 0 4.0704 0 0 686.3156605451187 0 686.3156605451187 0 23.48258770979733 0 0 0 0.4247425010840047 0 1.3494850021680094 0 EVT{I|L} 4.0704 - 16 NaN NaN 100567.8 NaN 4038 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6251 36.957 NaN 59930 35 0 5727.8 0.261 -1 SEMDTSVKF 9 38 530.2367643816877 1058.4589758301754 2 530.2367553710938 MULTI HCD FTMS 0 0 0 6248 44069.703125 0.4953447835284386 3 -0.08936309814453125 3 Oxidation (M) _SEM(Oxidation (M))DTSVKF_ ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 27.628801355627647 0.12213550946336599 2 K{M(Oxidation (M))|F} 2 -1 27.206 0 0 2.5704 0 0 765.2860154803692 0 765.2860154803692 0 13.496075289514094 0 0 0 0.9247425010840047 0 0 0 K{M(Oxidation (M))|F} 2.5704 + + 10 + NaN NaN 92045.2 NaN 4039 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6252 36.96 NaN 50909 35 0 5895.8 0.261 -1 AICEHEALL 9 30 528.263022772086 1054.5114926109718 2 528.2637329101562 MULTI HCD FTMS 0 0 0 6248 16751.1484375 0.9097683283580253 1 -0.02976226806640625 4 Carbamidomethyl (C) _AIC(Carbamidomethyl (C))EHEALL_ ENSG00000205126|ENST00000378832|ACCSL 12.531546534597751 0.2520865569484384 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4627 0 0 810.336582549494 0 810.336582549494 0 21.365006360318688 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4627 + + 3 NaN NaN 83657 NaN 4040 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6253 36.963 NaN 38124 35 0 5854.7 0.261 + -1 CKDVSMNLM 9 24 565.2392768552273 NaN 0 565.2392578125 PEAK HCD FTMS 0 0 0 6248 9121.626953125 0.6494443264759081 1 -0.02976226806640625 5 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))KDVSM(Oxidation (M))NLM(Oxidation (M))_ REV__ENSG00000075035|ENST00000547525|WSCD2;REV__nc|ENSG00000075035|Q2TBF2-2|WSCD2 1.4819007175156935 0.28806575819904134 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93448 NaN 4041 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6254 36.967 NaN 27460 35 0 8030.3 0.261 + -1 CDCLTHLEVI 10 15 630.2910916479345 1258.567630362669 2 630.2916870117188 MULTI HCD FTMS 0 0 0 6248 13270.6103515625 1 0 0 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))DC(Carbamidomethyl (C))LTHLEVI_ REV__ENSG00000139626|ENST00000267082|ITGB7;REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF;REV__nc|ENSG00000139626|P26010-2|ITGB7 1.4819007175156935 0.4674597685733628 2 V{I|L} 2 -1 20.969 0 0 1.6661 0 0 1028.401170799025 0 1028.401170799025 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.6661 + + 1 NaN NaN 95334.5 NaN 4042 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6255 36.97 NaN 42995 35 0 6005.5 0.261 -1 MEAFAQRYC 9 29 567.740784571509 1133.467016209818 2 567.740966796875 MULTI HCD FTMS 0 0 0 6248 11414.8828125 0.6411263530397506 3 -0.08936309814453125 7 Oxidation (M) _M(Oxidation (M))EAFAQRYC_ ENSG00000105443|ENST00000452733|CYTH2;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000108669|Q15438-2|CYTH1;nc|ENSG00000108669|Q15438-3|CYTH1 2.0597508629832335 0.3354026079994024 2 VDD 3 -1 10.458 0 0 0.92262 0 0 786.3530140607437 0 786.3530140607437 0 7.3586311141647816 0 0 0 0 0 0 0 VDD 0.92262 - 5 NaN NaN 91734.6 NaN 4043 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6256 36.973 NaN 9778.9 35 0 4666.3 0.261 + 25366 SEEAEIIRKY 10 7 619.3249586959495 1236.6353644586989 2 619.8267822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _SEEAEIIRKY_ ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84301 NaN 4044 2210 6248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6258 36.978 NaN 1423300 35 0 105550 0.327 + 26890 SYISRTNQL 9 83 541.2853847709828 1080.5562166087655 2 541.28564453125 MULTI HCD FTMS 0 0 0 6257 786991.75 0.9145154411798884 2 -0.059600830078125 1 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 168.5375213894962 4.622051367253751E-09 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L} 9 0 + 83.457 0 0 7.7236 7.7236 91.592 0 0 0 1.6332794810801374 1.6332794810801374 1.6332794810801374 9.208187539523749 0 2.9802046884880937 0 0.6237125054200234 2.2346368802282015 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTN[AG]{I|L};{I|L}{[{M(Oxidation (M))|F}C]|[YS]}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGG[AG]{I|L};{I|L}{[{M(Oxidation (M))|F}C]|[YS]}SRTGGQ{I|L};{I|L}EN[H{I|L}]TNQ{I|L};[Q{I|L}]D[H{I|L}]TNQ{I|L};{I|L}E[HA][VG]TNQ{I|L};[Q{I|L}]DT[H{I|L}]NQ{I|L} 7.7236;6.8714;6.7202;6.4262;5.8721;5.574;4.8644;4.6042;4.2885;4.224 +;-;-;-;-;-;-;-;-;- + 1243 + NaN NaN 308040.9 NaN 4045 2211 6257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6259 36.983 NaN 399920 35 0 33967 0.261 + 9020 HPEKLATVL 9 75 504.2977948624576 1006.5810367917152 2 504.2979736328125 MULTI HCD FTMS 0 0 0 6257 184272.5 0.08201053256054798 20 -0.5536308288574219 2 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 47.594388314883695 0.03493607795751234 2 HPE 3 6 28.06 0 0 2.7876 0 0 0 640.4032076471311 640.4032076471311 -5.265931504406467 0 -5.265931504406467 0 0 0.4247425010840047 0 0 0 + HPE 2.7876 + + 172 + NaN NaN 143739.8 NaN 4046 2211 6257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6260 36.986 NaN 376150 35 0 40825 0.261 -1 ECHVTPEL 8 46 492.7263237469451 983.4380945606903 2 492.7264099121094 MULTI HCD FTMS 0 0 0 6257 139092.15625 0.898539206010087 1 -0.023189544677734375 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))HVTPEL_ ENSG00000023516|ENST00000025301|AKAP11 30.224811164608877 0.3565035853404968 2 ETDD{I|L} 5 -1 30.273 0 0 3.0783 0 0 392.2175465314469 0 392.2175465314469 0 12.068627281856337 0 0 0 0 0 0.805462187404089 0 ETDD{I|L} 3.0783 - 118 NaN NaN 138487.5 NaN 4047 2211 6257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6261 36.99 NaN 296790 35 0 39027 0.261 + -1 YVMRTTTTI 9 64 551.2840149723551 1100.55347701151 2 551.28466796875 MULTI HCD FTMS 0 0 0 6257 52972.890625 0.2923503162655485 -4 0.0993499755859375 4 Oxidation (M) _YVM(Oxidation (M))RTTTTI_ REV__ENSG00000151150|ENST00000280772|ANK3 16.149105407346934 0.22083165093524068 2 {I|L}{I|L}{[SA]|[TG]}TT{I|L} 7 -1 29.685 0 0 2.6973 0 0 383.14549452949376 0 383.14549452949376 0 4.917213583253073 0 0 0 0.5 0 0.5 0 {I|L}{I|L}{[SA]|[TG]}TT{I|L} 2.6973 - 221 NaN NaN 124474.7 NaN 4048 2211 6257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6262 36.993 NaN 29491 35 0 9236 0.261 -1 SYWTRCHHL 9 14 630.2910916479345 1258.567630362669 2 630.290771484375 MULTI HCD FTMS 0 0 0 6257 6911.64794921875 0.5208236671951537 1 -0.023189544677734375 5 Carbamidomethyl (C) _SYWTRC(Carbamidomethyl (C))HHL_ ENST00000366654.4_1_1:231155326-231155587:-|nuORF 1.6526216038709556 0.33848895094777925 2 V{I|L} 2 -1 20.969 0 0 1.6661 0 0 1028.4005604474626 0 1028.4005604474626 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 1.6661 - 5 NaN NaN 82337 NaN 4049 2211 6257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6263 36.996 NaN 85678 35 0 10514 0.262 + 10896 IWKCFQSL 8 43 512.7687901203585 1023.523027307517 2 512.2725830078125 MULTI HCD FTMS 0 0 0 6257 9900.89453125 0.542239702890443 -6 0.1484832763671875 6 Unmodified _IWKCFQSL_ REV__ENSG00000196678|ENST00000357967|ERI2;REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF;REV__nc|ENSG00000196678|A8K979-2|ERI2;REV__nc|ENSG00000196678|A8K979-3|ERI2;REV__nc|ENSG00000196678|A8K979-4|ERI2 14.838274106304384 0.4846187982323419 2 QS{I|L} 3 -1 36.198 0 0 3.5366 0 0 677.3378163068375 0 677.3378163068375 0 25.74031267727719 0 0 0 1 0 0 0 QS{I|L} 3.5366 + + 16 NaN NaN 96029 NaN 4050 2211 6257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6265 37.002 NaN 196580 35 0 40793 0.327 + 25231 SAQPAEQEL 9 42 486.73523860097487 971.4559242687498 2 486.7353820800781 MULTI HCD FTMS 0 0 0 6264 90812.5625 0.8258763420126075 1 -0.036411285400390625 1 Unmodified _SAQPAEQEL_ ENSG00000167705|ENST00000301336|RILP 24.881564428377168 0.14538514251145815 2 {[QN]|[E{I|L}]|[KN]}[DP]EQE{I|L} 8 3 + 39.385 0 0 4.0543 4.0543 81.077 0 0 0 0.45757490560674796 31.593793813122062 0.45757490560674796 0.051499783199062676 0 1 0 0 0 {[QN]|[E{I|L}]|[KN]}[DP]EQE{I|L};{[QN]|[E{I|L}]|[KN]}EPDQE{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}EPD[AG]E{I|L} 4.0543;4.049;3.1008;3.0955 -;-;-;- 88 NaN NaN 113834.4 NaN 4051 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6266 37.006 NaN 129990 35 0 13218 0.261 -1 ELMLSMLF 8 40 508.24564395505126 1014.4767349769025 2 509.2638854980469 MULTI HCD FTMS 0 0 0 6264 6108.806640625 0.9902409607370763 -1 0.023189544677734375 2 2 Oxidation (M) _ELM(Oxidation (M))LSM(Oxidation (M))LF_ ENSG00000077312|ENST00000243563|SNRPA 13.50788311687929 0.4944073034352369 2 EEA 3 -1 26.995 0 0 2.661 0 0 0 682.3170870416624 682.3170870416624 11.42159058960253 0 0 0 0 0 0 0.3807196863200844 0 EEA 2.661 - 10 + NaN NaN 108317.3 NaN 4052 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6267 37.01 NaN 407660 35 0 43349 0.261 + 1903 DAAEIRLVSK 10 79 551.3167941035778 1100.6190352739554 2 551.3175659179688 MULTI HCD FTMS 0 0 0 6264 87975.4765625 0.5812558895405064 -2 0.052951812744140625 3 Unmodified _DAAEIRLVSK_ ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF 66.54955139489424 0.02167381291790446 2 DAAE{I|L}R{I|L}VSK 10 0 + 76.826 0 0 6.9802 6.9802 94.239 0 0 0 45.37401551688937 14.374081049124499 14.374081049124499 35.139275466122015 0 2.091129063296272 1.5228787452803376 0.6307196863200843 0.3054621874040891 + + DAAE{I|L}R{I|L}VSK;DAAKK{I|L}{[QN]|[E{I|L}]|[KN]}[{I|L}T];D[RD]{I|L}[VG]{I|L}VSK;HH[QP]R{I|L}VSK;D{[RE]|[WV]}{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}[{I|L}T] 6.9802;3.7875;3.0278;1.7053;1.6684 +;-;-;-;- + 826 + NaN NaN 143024.9 NaN 4053 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6268 37.013 NaN 73895 35 0 25937 0.261 -1 RYLEKPMEI 9 21 597.8131717482389 1193.6117905632777 2 597.8129272460938 MULTI HCD FTMS 0 0 0 6264 30779.298828125 0.07275978997016955 51 -1.4143905639648438 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 8.155526934196011 0.2891920862272901 2 KE 2 -1 20.969 0 0 1.7568 0 0 504.2260253870183 429.22593103580317 933.4519564228215 0 0 0 0 0 1 0 0 0 KE 1.7568 - 16 + NaN NaN 96690.8 NaN 4054 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6269 37.016 NaN 164250 35 0 27465 0.261 + 31685 VYKPAQNSW 9 40 546.7763064573595 1091.538059981519 2 546.7779541015625 MULTI HCD FTMS 0 0 0 6264 45403.1484375 0.7770557416468824 -1 0.023189544677734375 5 Unmodified _VYKPAQNSW_ ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant 26.268140514670165 0.13340543277302316 2 [YV]KGER 6 6 53.249 0 0 4.8784 0 0 0 356.12619959049067 356.12619959049067 27.331655954731247 0 0 0 0 0.8494850021680094 2 0 0.3494850021680094 [YV]KGER 4.8784 - 76 + NaN NaN 114687.3 NaN 4055 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6270 37.02 NaN 43885 35 0 6905 0.261 -1 ICDCNLKWL 9 23 582.7804417201891 1163.546330507178 2 582.7808227539062 MULTI HCD FTMS 0 0 0 6264 24365.666015625 0.5447863667388815 4 -0.11260604858398438 6 Carbamidomethyl (C) _IC(Carbamidomethyl (C))DCNLKWL_ ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 6.2057823575117 0.30397260197431997 2 E 1 -1 6.9897 0 0 0.60072 0 0 849.3726987706531 182.11445032291252 1031.4871490935657 0 0 0 0 0 0 0 0 0 E 0.60072 - 4 + NaN NaN 92391.8 NaN 4056 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6271 37.023 NaN 138520 35 0 17915 0.261 + 14005 KYTEGVQSL 9 40 512.7687901203585 1023.523027307517 2 512.768310546875 MULTI HCD FTMS 0 0 0 6264 54887.6328125 0.6340103457791795 -2 0.052951812744140625 7 Unmodified _KYTEGVQSL_ ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF 26.020703789607367 0.13554323117744113 2 ERQS{I|L} 5 5 42.92 0 0 4.1933 0 0 392.20625502754064 0 392.20625502754064 0 21.95046257204389 0 0 0 1.4247425010840047 0 0 0 ERQS{I|L} 4.1933 - 67 NaN NaN 110896.6 NaN 4057 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6272 37.026 NaN 86258 35 0 15874 0.261 -1 MEDAHLDAI 9 33 515.7286768947597 1029.4428008563193 2 515.7293701171875 MULTI HCD FTMS 0 0 0 6264 25474.015625 0.7986001913917551 -4 0.10601806640625 8 Oxidation (M) _M(Oxidation (M))EDAHLDAI_ ENSG00000163050|ENST00000366777|COQ8A;ENST00000478406.5_1_1:227171537-227174435:+|nuORF;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-2|COQ8A;nc|ENSG00000163050|Q8NI60-3|COQ8A;nc|ENSG00000163050|Q8NI60-4|COQ8A 12.531546534597751 0.2520865569484384 2 [YV]A 3 -1 25.942 0 0 2.52 0 0 0 693.2522545518849 693.2522545518849 0.8927186071611715 0 0 0 0 0 1.6989700043360187 0 0 [YV]A 2.52 - 16 NaN NaN 100788.8 NaN 4058 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6273 37.029 NaN 22193 35 0 4279.6 0.261 + 16312 LRCMLPVI 8 17 472.77420349232733 943.5338540514547 2 472.77423095703125 MULTI HCD FTMS 0 0 0 6264 7498.61376953125 0.04437676898389205 14 -0.3743629455566406 9 Unmodified _LRCMLPVI_ ENST00000379391.7_2_12:57452318-57452450:-|nuORF 2.302733041254933 0.5385759549224092 2 V{I|L} 2 6 20.969 0 0 2.2224 0 0 713.3685169904312 0 713.3685169904312 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 2.2224 + + 1 NaN NaN 91461.6 NaN 4059 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6274 37.033 NaN 23782 35 0 2438.2 0.261 -1 LYCYHCIY 8 23 567.740784571509 1133.467016209818 2 567.7406005859375 MULTI HCD FTMS 0 0 0 6264 11825.388671875 0.6641827548307824 5 -0.14573287963867188 10 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))YHCIY_ ENST00000609928.5_3_1:179821843-179834581:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85250.7 NaN 4060 2212 6264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6276 37.038 NaN 445950 35 0 33984 0.327 + 21710 QADFLDKQM 9 62 556.2580595514929 1110.5015661697857 2 556.2579956054688 MULTI HCD FTMS 0 0 0 6275 125886.9140625 0.9601242347052777 1 -0.029865264892578125 1 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 91.08480475639789 0.0044975408722150376 2 [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F} 9 0 + 71.256 0 0 6.4166 6.4166 87.942 0 0 0 55.85499869774067 16.478174818886373 16.478174818886373 8.066884185923655 0 1.9863467363607779 0 0 1.1549471895720984 + + [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};{[CP]|[EA]}N{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};[QA]D{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};{[CP]|[EA]}GG{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};{[CP]|[EA]}N{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};{[CP]|[EA]}GG{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};[QA]D{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}T{[TV]|[{I|L}S]};{[CP]|[EA]}N{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}T{[TV]|[{I|L}S]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}GKQ{M(Oxidation (M))|F};{[CP]|[EA]}GG{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}T{[TV]|[{I|L}S]} 6.4166;5.6901;5.2727;4.8609;4.5462;3.721;3.5739;2.8475;2.694;2.0222 +;-;-;-;-;-;-;-;-;- + 420 + NaN NaN 148378.9 NaN 4061 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6277 37.042 NaN 312960 35 0 54368 0.261 + 35164 YVHMVTHF 8 49 525.2473454605481 1048.4801379878961 2 525.2473754882812 MULTI HCD FTMS 0 0 0 6275 107011.09375 0.7721630263127186 3 -0.07619476318359375 2 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 74.39630413441286 0.024620164976204544 2 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 79.875 0 0 7.6182 7.6182 95.374 0 0 0 6.63811573052314 6.63811573052314 6.63811573052314 34.463950151760656 0 2.3494850021680094 2 0.3807196863200844 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}PH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}HP{M(Oxidation (M))|F};[YV][VP][C(Carbamidomethyl (C))Q]H{M(Oxidation (M))|F} 7.6182;4.3311;3.8287;3.041 +;-;-;- + 201 NaN NaN 125877.1 NaN 4062 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6278 37.046 NaN 195070 35 0 37526 0.261 + 34896 YSFTTTAER 9 41 538.2562563063564 1074.4979596795126 2 538.2564697265625 MULTI HCD FTMS 0 0 0 6275 32231.962890625 0.6762817407804639 1 -0.029865264892578125 3 Unmodified _YSFTTTAER_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 19.361941925380144 0.1930734562688509 2 YS{M(Oxidation (M))|F}TT 5 4 55.675 0 0 5.1815 0 0 0 472.21592127017817 472.21592127017817 48.68562527100117 0 0 0 0 0.3252574989159953 1.6989700043360187 0.3494850021680094 0 + YS{M(Oxidation (M))|F}TT 5.1815 + + 40 + NaN NaN 120555.3 NaN 4063 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6279 37.049 NaN 48448 35 0 6712.5 0.262 -1 APCRCTRQEDK 11 33 455.21159284804986 1362.6129491443496 3 455.5465087890625 MULTI HCD FTMS 0 0 0 6275 17924.048828125 0.7734576570227396 1 -0.029865264892578125 4 Carbamidomethyl (C) _APC(Carbamidomethyl (C))RCTRQEDK_ ENST00000428423.5_1_7:72474228-72476394:-|nuORF 0.5059551277355931 0.4167017191902429 2 Q 1 -1 4.6041 0 0 0.33789 0 0 770.3072983648559 461.22605310611567 1231.5333514709716 0 0 0 0 0 0 0 0 0 Q 0.33789 + + 3 + NaN NaN 102146.2 NaN 4064 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6280 37.053 NaN 10226 35 0 3189.2 0.261 + 32515 WGKRFCVWR 9 10 619.3244018554688 NaN 0 619.3244018554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _WGKRFCVWR_ REV__ENST00000264193.2_1_3:98309863-98309983:-|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91243.3 NaN 4065 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6281 37.056 NaN 28935 35 0 4920.8 0.264 + 32349 VYVGWGER 8 15 483.24419915949244 NaN 0 483.25640869140625 PEAK HCD FTMS 0 0 0 6275 2348.568603515625 0.8493727757987479 -1 0.036411285400390625 6 Unmodified _VYVGWGER_ REV__ENSG00000143337|ENST00000606911|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;REV__nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91023.9 NaN 4066 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6282 37.059 NaN 23292 35 0 2611.6 0.261 -1 WLWAKWMC 8 25 570.2624491895918 NaN 0 570.2626953125 PEAK HCD FTMS 0 0 0 6275 9709.9228515625 0.9422838232934649 1 -0.029865264892578125 7 Oxidation (M) _WLWAKWM(Oxidation (M))C_ ENST00000377833.8_1_10:17147498-17151673:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89308.8 NaN 4067 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6283 37.063 NaN 26024 35 0 5417.6 0.261 -1 YNCHCPHGW 9 15 587.2217758791284 NaN 0 587.2217407226562 PEAK HCD FTMS 0 0 0 6275 7736.15283203125 0.5256288347323658 2 -0.053020477294921875 8 Carbamidomethyl (C) _YNC(Carbamidomethyl (C))HCPHGW_ ENSG00000187957|ENST00000341772|DNER 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90627.7 NaN 4068 2213 6275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6285 37.068 NaN 1548000 35 0 166600 0.327 + 1558 AYVHMVTHF 9 93 560.7657330135318 1119.5169130938634 2 560.765869140625 MULTI HCD FTMS 0 0 0 6284 804712.1875 0.7146462179584668 6 -0.15895462036132812 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 146.00731375242447 1.3047045798573153E-05 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 113.43 0 0 10.132 10.132 95.588 0 0 0 79.3231060412541 12.252684618815096 12.252684618815096 11.690388485692651 0 3.0356668758921828 2 0.5941876774005248 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}TVH{M(Oxidation (M))|F};AYV[MN]AAPH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}[H{I|L}]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]PVH{M(Oxidation (M))|F} 10.132;9.0879;8.9496;8.1553;6.3327;6.3192;6.0288;5.9941;5.8282;5.8117 +;+;-;-;-;-;-;-;-;- + 2868 + NaN NaN 317374.4 NaN 4069 2214 6284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6286 37.072 NaN 217050 35 0 20755 0.261 -1 FSSVMRLE 8 55 492.743475968894 983.472399004588 2 492.726318359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _FSSVM(Oxidation (M))RLE_ ENSG00000086696|ENST00000199936|HSD17B2 7.910154910731844 0.5302565402355366 2 TTQTN 5 -1 33.443 0 0 3.4005 0 0 420.20176894355626 0 420.20176894355626 0 18.750612633917 0 0 0 0.5 0 0 0 TTQTN 3.4005 - 132 NaN NaN 114762.7 NaN 4070 2214 6284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6287 37.076 NaN 93360 35 0 9196.9 0.261 + 27731 TASVSGIHLA 10 36 478.26399625755926 954.5134395819185 2 478.26409912109375 MULTI HCD FTMS 0 0 0 6284 35604.8359375 0.0751242510436481 12 -0.3080863952636719 3 Unmodified _TASVSGIHLA_ REV__ENSG00000081818|ENST00000194152|PCDHB4;REV__ENSG00000112852|ENST00000194155|PCDHB2;REV__ENSG00000113205|ENST00000231130|PCDHB3;REV__ENSG00000113209|ENST00000231134|PCDHB5;REV__ENSG00000113211|ENST00000231136|PCDHB6;REV__ENSG00000113248|ENST00000231173|PCDHB15;REV__ENSG00000120322|ENST00000239444|PCDHB8;REV__ENSG00000120324|ENST00000239446|PCDHB10;REV__ENSG00000120327|ENST00000239449|PCDHB14;REV__ENSG00000177839|ENST00000316105|PCDHB9;REV__ENSG00000197479|ENST00000354757|PCDHB11;REV__ENSG00000272674|ENST00000609684|PCDHB16;REV__nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;REV__nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;REV__nc|ENSG00000290894|Q96TA0|PCDHB18P;REV__PCDHB6|p.D475N|1|0.08|ENSG00000113211|chr5:141151680-141151680|G/A|missense_variant 10.073929032068715 0.4168838835836452 2 PA{I|L} 3 -1 28.188 0 0 2.9531 0 0 655.3277214001091 0 655.3277214001091 0 15.723418215173197 0 0 0 0.5 0 0 0 PA{I|L} 2.9531 - 14 NaN NaN 108187.1 NaN 4071 2214 6284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6288 37.079 NaN 31653 35 0 5256 0.261 -1 VCMCVCVHM 9 22 528.6932303439268 1055.3719077546534 2 528.693359375 MULTI HCD FTMS 0 0 0 6284 11229.67578125 0.527212553276298 1 -0.02315521240234375 4 2 Oxidation (M) _VCM(Oxidation (M))CVCVHM(Oxidation (M))_ ENST00000256495.3_1_3:5025489-5025579:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95363.8 NaN 4072 2214 6284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6289 37.082 NaN 85241 35 0 10157 0.261 + 2536 DSSSILADR 9 39 482.24047435887206 962.4663957845441 2 482.24072265625 MULTI HCD FTMS 0 0 0 6284 23558.357421875 0.6491519284774 -2 0.06627655029296875 5 Unmodified _DSSSILADR_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 18.373094154950223 0.20161688160436167 2 {[DS]|[MA]|[CV]|TT}SS{I|L}{I|L}ADR 9 0 + 36.889 0 0 3.8328 3.8328 81.881 0 0 0 23.70174676113472 16.47817481888638 16.47817481888638 2.503859178250785 0 0.5 0 0.3807196863200844 0 + + {[DS]|[MA]|[CV]|TT}SS{I|L}{I|L}ADR;{[ES]|[DT]|[{I|L}C]}C(Carbamidomethyl (C)){I|L}{I|L}ADR;{[ES]|[DT]|[{I|L}C]}[CG]{I|L}{I|L}ADR;{[ES]|[DT]|[{I|L}C]}[VG]{[ET]|[MV]}ADR 3.8328;3.5726;2.6103;2.4273 +;-;-;- + 53 + NaN NaN 92582.5 NaN 4073 2214 6284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6290 37.086 NaN 22938 35 0 4038.8 0.261 + -1 QFCQLYEC 8 21 566.7254003879008 1131.4362478426015 2 566.7257690429688 MULTI HCD FTMS 0 0 0 6284 15272.69921875 0.794032849163123 6 -0.15895462036132812 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))QFCQLYEC(Carbamidomethyl (C))_ REV__ENST00000424460.1_1_7:8380649-8382766:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89721.3 NaN 4074 2214 6284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6292 37.091 NaN 301400 35 0 40771 0.327 -1 MEEEAGQTSI 10 62 555.7344772004384 1109.4544014676767 2 555.7348022460938 MULTI HCD FTMS 0 0 0 6291 121458.4609375 0.7675554172289613 5 -0.13579940795898438 1 Oxidation (M) _M(Oxidation (M))EEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 22.65808497894818 0.29917593477267174 2 TS{I|L} 3 -1 41.44 0 0 3.7352 0 0 790.2808765113793 0 790.2808765113793 0 11.857186587020507 0 0 0 1 0 0.8252574989159953 0 TS{I|L} 3.7352 + + 247 NaN NaN 133339.5 NaN 4075 2215 6291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6293 37.095 NaN 253950 35 0 60626 0.261 -1 EKLYRCNKCEK 11 43 490.9121484926274 NaN 0 490.9222412109375 PEAK HCD FTMS 0 0 0 6291 2737.381591796875 0.6463965098797536 -1 0.02315521240234375 2 Carbamidomethyl (C) _EKLYRC(Carbamidomethyl (C))NKCEK_ ENSG00000198046|ENST00000504904|ZNF667 2.6312355333042263 0.3346560860168035 2 T 1 -1 4.6041 0 0 0.4699 0 0 632.6228676866236 243.11371790103752 875.7365855876611 0 0 0 0 0 0 0 0 0 T 0.4699 - 4 + NaN NaN 121757.8 NaN 4076 2215 6291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6294 37.099 NaN 99243 35 0 12656 0.261 -1 VYTRHMTWI 9 43 408.2061809579129 1221.5967134739387 3 408.2061462402344 MULTI HCD FTMS 0 0 0 6291 42457.328125 0.4221445320489313 6 -0.158966064453125 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 9.5439744041441 0.27789851728676895 2 VY 2 -1 37.959 0 0 3.1073 0 0 0 956.4444641950131 956.4444641950131 17.47425010840047 0 0 0 0 0 2 0 0 VY 3.1073 + + 6 + NaN NaN 102202.4 NaN 4077 2215 6291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6295 37.102 NaN 109950 35 0 11442 0.261 + 27898 TEEDLDLVTL 10 37 574.2907273567691 1146.5669017803382 2 574.291015625 MULTI HCD FTMS 0 0 0 6291 52082.58984375 0.012690742101940967 63 -1.7201118469238281 4 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 19.256988751693697 0.33098864134661865 2 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3545139500093 0 815.3545139500093 0 10 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 20 NaN NaN 99194.3 NaN 4078 2215 6291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6296 37.106 NaN 59323 35 0 10106 0.261 -1 0 23 495.7331340605161 1978.9034303756644 4 495.98431396484375 MULTI HCD FTMS 0 0 0 6291 10919.4951171875 0.6203696819890244 2 -0.056301116943359375 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97002.9 NaN 4079 2215 6291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6297 37.109 NaN 38311 35 0 8149.5 0.261 + 23275 RHCWEVET 8 32 530.2367643816877 1058.4589758301754 2 530.236083984375 MULTI HCD FTMS 0 0 0 6291 13259.048828125 0.1490321060918328 8 -0.21204757690429688 6 Unmodified _RHCWEVET_ ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5-2|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39 5.230669730166228 0.5342319408533849 2 [RH]{[C(Carbamidomethyl (C))E]|[WC]}[{I|L}T]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 8 3 + -8.3985 0 0 -0.79346 -0.79346 0 0 0 0 0 0 0 -8.398487830376375 0 0 0 0.5 0 [RH]{[C(Carbamidomethyl (C))E]|[WC]}[{I|L}T]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} -0.79346 - 6 + NaN NaN 86899.6 NaN 4080 2215 6291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6299 37.114 NaN 290980 35 0 25978 0.327 + 26891 SYISRTNQL 9 50 541.2853847709828 1080.5562166087655 2 541.2854614257812 MULTI HCD FTMS 0 0 0 6298 164001.109375 0.1905757549479639 7 -0.188873291015625 1 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 100.7086487251713 0.004245359191255521 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNGA{I|L} 10 2 + 76.834 0 0 7.1106 7.1106 87.37 0 0 0 5.764837301042718 61.349425360888716 5.764837301042718 3.521825181113627 0 2.5 0 0.3252574989159953 0.4247425010840047 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNGA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTNQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGGA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SRTGGQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}SR[NS]AA{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}[H{I|L}]NGA{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}[H{I|L}]NGA{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}[H{I|L}]NQ{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}[H{I|L}]NQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[VG][NS][RV] 7.1106;6.7847;6.2625;5.9325;4.9598;2.3923;2.2767;2.0664;1.9507;1.932 -;+;-;-;-;-;-;-;-;- + 340 NaN NaN 125133.6 NaN 4081 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6300 37.119 NaN 313970 35 0 25307 0.261 + 9021 HPEKLATVL 9 71 504.2977948624576 1006.5810367917152 2 504.2979431152344 MULTI HCD FTMS 0 0 0 6298 136516.640625 0.060756772719929394 25 -0.7213058471679688 2 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 26.268140514670165 0.13340543277302316 2 HPE 3 6 26.51 0 0 2.6337 0 0 0 640.4044893854124 640.4044893854124 10.31234684152075 0 0 0 0 0.3807196863200844 0 0 0 + HPE 2.6337 + + 49 + NaN NaN 143421.9 NaN 4082 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6301 37.122 NaN 323640 35 0 44195 0.262 + 20750 PGGAKQHI 8 45 404.227393024858 806.440233116516 2 404.2272644042969 MULTI HCD FTMS 0 0 0 6298 86019.59375 0.6548997924640393 -1 0.023174285888671875 3 Unmodified _PGGAKQHI_ REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF 13.50788311687929 0.4944073034352369 2 PDG{I|L}RH{I|L} 7 -1 + 84.149 0 0 10.435 10.435 90.011 0 0 0 10.440228147639203 10.440228147639203 10.440228147639203 0.4845500650402812 0 2.048455006504028 1.6989700043360187 0 0 PDG{I|L}RH{I|L};PD{I|L}GRH{I|L};[DP]G{I|L}RH{I|L};[DP][R{I|L}]GH{I|L};{I|L}[DP]GRH{I|L};[PS][TP]RH{I|L} 10.435;10.375;9.14;8.38;6.8143;4.308 -;-;-;-;-;- 110 + NaN NaN 135135.7 NaN 4083 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6302 37.126 NaN 142810 35 0 27011 0.261 + -1 LPKELPEAM 9 36 522.2754991688437 1042.5364454044873 2 522.2756958007812 MULTI HCD FTMS 0 0 0 6298 45477.265625 0.5268684261259704 -9 0.23514556884765625 4 Oxidation (M) _LPKELPEAM(Oxidation (M))_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;REV__FRY|p.I84M|1|0.25|ENSG00000073910|chr13:32079015-32079015|C/G|missense_variant;REV__FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant 12.240655878213236 0.2545997876781172 2 {I|L}P 2 -1 42.959 0 0 4.1206 0 0 0 829.3761497727604 829.3761497727604 21.989700043360187 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}P 4.1206 + + 5 + NaN NaN 96735.9 NaN 4084 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6303 37.129 NaN 110530 35 0 18054 0.261 + 26369 SSQLDACTM 9 40 478.19649617740737 954.3784394216148 2 478.19659423828125 MULTI HCD FTMS 0 0 0 6298 58753.0078125 0.6944347871855638 -2 0.046329498291015625 5 Unmodified _SSQLDACTM_ ENSG00000198286|ENST00000396946|CARD11 9.38312468134398 0.279288223203164 2 [TA]ASEAA 7 8 61.19 0 0 6.4115 0 0 0 350.0835360162719 350.0835360162719 55.70570735618212 0 0 0 0 1.8494850021680094 1.6989700043360187 0 0 [TA]ASEAA 6.4115 - 67 + NaN NaN 101818.3 NaN 4085 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6304 37.132 NaN 69785 35 0 11346 0.261 + 20742 PGARYTVL 8 39 438.7505502094559 875.4865474857119 2 438.7503967285156 MULTI HCD FTMS 0 0 0 6298 48086.5078125 1 0 0 6 Unmodified _PGARYTVL_ ENSG00000129968|ENST00000292577|ABHD17A;ENST00000588598.5_1_19:1879918-1881565:-|nuORF;nc|ENSG00000129968|Q96GS6-3|ABHD17A;nc|ENSG00000129968|Q96GS6-4|ABHD17A 11.640296217721598 0.50814828952472 2 V{I|L} 2 6 30.969 0 0 3.5374 0 0 645.32344431364 0 645.32344431364 0 30.880456295278407 0 0 0 1 0 0 0 + V{I|L} 3.5374 + + 7 + NaN NaN 96349.9 NaN 4086 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6305 37.135 NaN 110110 35 0 18409 0.261 + 25993 SPDSGVYEM 9 33 500.70008405455576 999.3856151759115 2 500.7002258300781 MULTI HCD FTMS 0 0 0 6298 33273.25 0.21763244610947746 -8 0.21862411499023438 7 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 42.09456458481378 0.05572955244001856 2 YE{M(Oxidation (M))|F} 3 6 46.242 0 0 4.6271 0 0 542.2343066756838 0 542.2343066756838 0 39.675390846596486 0 0 0 1.5 0 0.805462187404089 0 + YE{M(Oxidation (M))|F} 4.6271 + + 28 + NaN NaN 101573.4 NaN 4087 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6306 37.139 NaN 137100 35 0 13521 0.261 + 23212 RFPQEMVKGSQ 11 35 436.22384367600995 1305.6497016282299 3 436.22308349609375 MULTI HCD FTMS 0 0 0 6298 9527.2421875 0.30605323023868264 5 -0.13579177856445312 8 Unmodified _RFPQEMVKGSQ_ ENSG00000177047|ENST00000380229|IFNW1 1.214830529360525 0.41359283248740725 2 SQK{I|L} 4 9 14.412 0 0 1.1039 0 0 511.222188033245 335.13556848424054 846.3577565174855 0 0 0 0 0 0 0 0 0 SQK{I|L} 1.1039 - 20 + NaN NaN 106009.4 NaN 4088 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6307 37.142 NaN 42325 35 0 7157.4 0.261 -1 PAHNMWTSTRF 11 34 455.21159284804986 1362.6129491443496 3 455.21124267578125 MULTI HCD FTMS 0 0 0 6298 2346.162841796875 0.11887488756846955 3 -0.09276962280273438 9 Oxidation (M) _PAHNM(Oxidation (M))WTSTRF_ ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8 0.5059551277355931 0.4167017191902429 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 96760.5 NaN 4089 2216 6298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6309 37.147 NaN 544620 35 0 93059 0.327 + 1074 AYHNSPAYL 9 48 518.2482930930637 1034.4820332529273 2 518.2484130859375 MULTI HCD FTMS 0 0 0 6308 294586.46875 0.913569109184625 1 -0.02320098876953125 1 Unmodified _AYHNSPAYL_ chr17:40628975-40630714|522|33.96|0.3|6.83|-|ENST00000644527|SMARCE1,SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000469334.5_1_17:38788437-38802054:-|nuORF;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;nc|ENSG00000073584|Q969G3-6|SMARCE1 43.85829265575387 0.04763305254408404 2 S[KA]{[C(Carbamidomethyl (C))E]|[WC]}Y{I|L} 7 7 32.144 0 0 3.1073 0 0 165.07934767890782 0 165.07934767890782 0 15.154696463750227 0 0 0 0.5 0 1.2134679910804405 0.805462187404089 S[KA]{[C(Carbamidomethyl (C))E]|[WC]}Y{I|L} 3.1073 - 63 NaN NaN 164461.9 NaN 4090 2217 6308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6310 37.152 NaN 583910 35 0 76150 0.261 + 24995 RYVMTTTTL 9 83 551.2840149723551 1100.55347701151 2 551.2842407226562 MULTI HCD FTMS 0 0 0 6308 162093.828125 0.8945742125439698 2 -0.059642791748046875 2 Oxidation (M) _RYVM(Oxidation (M))TTTTL_ ENSG00000134001|ENST00000256383|EIF2S1 53.40400417844725 0.026808823219830042 2 {M(Oxidation (M))|F}TTTT{I|L} 6 3 52.56 0 0 4.7757 0 0 418.233690330275 0 418.233690330275 0 -1.2641002136337676 -1.2641002136337676 0 0 1.9049471895720984 0 0.8807196863200843 0 + {M(Oxidation (M))|F}TTTT{I|L} 4.7757 + + 1967 NaN NaN 170885 NaN 4091 2217 6308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6311 37.155 NaN 158710 35 0 18930 0.264 -1 FPFRKDLRM 9 55 409.22180456297207 1224.6435842891162 3 409.2217102050781 MULTI HCD FTMS 0 0 0 6308 42555.4375 0.7438130747525793 -1 0.0331268310546875 3 Oxidation (M) _FPFRKDLRM(Oxidation (M))_ ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT 10.150570793230772 0.27265765907388223 2 PE 2 -1 20.969 0 0 1.7123 0 0 980.5191057502021 0 980.5191057502021 0 6.9897000433601875 0 0 0 0 0 0 0 PE 1.7123 - 12 NaN NaN 104405.8 NaN 4092 2217 6308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6312 37.159 NaN 87326 35 0 8494.2 0.261 + 25232 SAQPAEQEL 9 45 486.73523860097487 971.4559242687498 2 486.7351989746094 MULTI HCD FTMS 0 0 0 6308 21512.234375 0.19563863131978984 6 -0.1557464599609375 4 Unmodified _SAQPAEQEL_ ENSG00000167705|ENST00000301336|RILP 12.174745833636585 0.2551692358394414 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE 4 6 33.148 0 0 3.4122 0 0 0 451.19797693424067 451.19797693424067 19.704999916446795 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE 3.4122 - 12 + NaN NaN 104188.4 NaN 4093 2217 6308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6313 37.162 NaN 23159 35 0 5997.8 0.261 -1 GEDAEEGCCH 10 22 582.190173737537 1162.3657945418738 2 582.1902465820312 MULTI HCD FTMS 0 0 0 6308 12216.1123046875 0.7295913522890739 10 -0.2551460266113281 5 2 Carbamidomethyl (C) _GEDAEEGC(Carbamidomethyl (C))C(Carbamidomethyl (C))H_ ENST00000524558.5_1_11:75280137-75280209:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 82459.8 NaN 4094 2217 6308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6314 37.165 NaN 21343 35 0 4676.6 0.261 -1 DRCHHCSVC 9 15 587.2217758791284 NaN 0 587.2217407226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _DRC(Carbamidomethyl (C))HHC(Carbamidomethyl (C))SVC_ ENSG00000102383|ENST00000373367|ZDHHC15;ENSG00000104219|ENST00000262096|ZDHHC2;nc|ENSG00000102383|Q96MV8-3|ZDHHC15 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94489.2 NaN 4095 2217 6308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6316 37.171 NaN 1221700 35 0 432170 0.327 + 31950 VYPDGIRHI 9 55 535.2930334701574 1068.5715140071147 2 535.2931518554688 MULTI HCD FTMS 0 0 0 6315 545351 0.9704202318056272 1 -0.036441802978515625 1 Unmodified _VYPDGIRHI_ ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF 47.594388314883695 0.03493607795751234 2 VYPD{[VA]|[{I|L}G]}RH{I|L} 9 0 + 74.191 0 0 6.943 6.943 88.709 0 0 0 55.607887415777526 7.1919646325935815 7.1919646325935815 7.754537344402905 0 1.8851518780601921 2 0.4247425010840047 0 + + VYPD{[VA]|[{I|L}G]}RH{I|L};VY{I|L}{[NV]|[RG]}PDH{I|L};[YV]PD{[VA]|[{I|L}G]}RH{I|L};VY{I|L}{[ES]|[DT]|[{I|L}C]}[KS]M{I|L};VY{I|L}{[ES]|[DT]|[{I|L}C]}[KA]{M(Oxidation (M))|F}{I|L};[YV][KS]{[ES]|[DT]|[{I|L}C]}{I|L}M{I|L};[YV][DV][PA]RH{I|L};[YV][KS]{[ES]|[DT]|[{I|L}C]}M{I|L}{I|L};{I|L}[YV]{[NV]|[RG]}PDH{I|L};[DP][YV]{[VA]|[{I|L}G]}RH{I|L} 6.943;6.2174;4.2859;4.1606;3.9947;3.5399;3.2796;2.9562;2.1523;1.6897 +;-;+;-;-;-;-;-;-;- + 254 + NaN NaN 273155.2 NaN 4096 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6317 37.175 NaN 198380 35 0 26092 0.262 + -1 PQAQKIGS 8 44 435.73747775752923 869.4604025818585 2 435.7374267578125 MULTI HCD FTMS 0 0 0 6315 102946.875 0.7332844076396202 -2 0.05632781982421875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PQAQKIGS_ REV__ENST00000483856.1_1_6:109773275-109773587:-|nuORF 11.640296217721598 0.50814828952472 2 {I|L}KQSG 5 -1 43.984 0 0 5.0588 0 0 338.15838597889973 0 338.15838597889973 0 40.88554074136319 0 0 0 1.3807196863200843 0 0 0 {I|L}KQSG 5.0588 - 24 NaN NaN 108093 NaN 4097 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6318 37.179 NaN 218340 35 0 34534 0.261 + 26120 SPLGKEDTL 9 34 480.2558257644321 958.4970985956642 2 480.255615234375 MULTI HCD FTMS 0 0 0 6315 128602.109375 0.2515046978818203 -4 0.10265731811523438 3 Unmodified _SPLGKEDTL_ ENSG00000155561|ENST00000285968|NUP205 53.40400417844725 0.026808823219830042 2 SP{I|L}[DV]{[QS]|[NT]}T{I|L} 9 4 + 60.652 0 0 6.3278 6.3278 93.943 0 0 0 30.435684192257995 6.23975896461701 6.23975896461701 60.652209333178604 0 1.8494850021680094 1.6989700043360187 0.805462187404089 0 SP{I|L}[DV]{[QS]|[NT]}T{I|L} 6.3278 - 27 + NaN NaN 113760.3 NaN 4098 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6319 37.182 NaN 70330 35 0 9888.7 0.261 + 10897 IWKCFQSL 8 30 512.7687901203585 1023.523027307517 2 512.7687377929688 MULTI HCD FTMS 0 0 0 6315 21980.38671875 0.2538967681758187 4 -0.10933685302734375 4 Unmodified _IWKCFQSL_ REV__ENSG00000196678|ENST00000357967|ERI2;REV__ENST00000567859.5_1_16:20812516-20814833:-|nuORF;REV__nc|ENSG00000196678|A8K979-2|ERI2;REV__nc|ENSG00000196678|A8K979-3|ERI2;REV__nc|ENSG00000196678|A8K979-4|ERI2 13.042465956692817 0.497831663890332 2 QS{I|L} 3 -1 35.005 0 0 3.4201 0 0 677.3377331804371 0 677.3377331804371 0 24.547509540478032 0 0 0 0.8807196863200843 0 0 0 QS{I|L} 3.4201 + + 63 NaN NaN 88659.2 NaN 4099 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6320 37.185 NaN 125220 35 0 16093 0.261 + 34201 YPDLVHKV 8 39 485.76958791823483 969.5246229032697 2 485.7586364746094 MULTI HCD FTMS 0 0 0 6315 5509.19287109375 0.37692157619307715 3 -0.07946395874023438 5 Unmodified _YPDLVHKV_ ENSG00000127220|ENST00000247706|ABHD8;MYO9B-ABHD8|1|fusion 10.183394434864962 0.5188676124868831 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D 3 5 30.458 0 0 3.1415 0 0 0 591.3371524181177 591.3371524181177 -3.1871353303805705 0 -3.1871353303805705 0 0 0 2 0 0 + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D 3.1415 + + 65 + NaN NaN 100340.2 NaN 4100 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6321 37.188 NaN 93306 35 0 9701.5 0.261 + 20501 PDFRESSRV 9 39 546.7763064573595 1091.538059981519 2 546.7772827148438 MULTI HCD FTMS 0 0 0 6315 20663.6796875 0.3536501651824227 5 -0.13254547119140625 6 Unmodified _PDFRESSRV_ nc|ENSG00000136854|P61764-2|STXBP1 5.731851221503515 0.3075653528928475 2 [DP]{M(Oxidation (M))|F}R{[DA]|[EG]}K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 9 4 + 16.144 0 0 1.479 1.479 80.832 0 0 0 2.683692563431851 3.1682426284721323 2.683692563431851 2.5257498915995313 0 0 0 0 0 [DP]{M(Oxidation (M))|F}R{[DA]|[EG]}K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[DP]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}RD{[QV]|[N{I|L}]|[RA]|[KV]};[DP]{M(Oxidation (M))|F}R{[ES]|[DT]|[{I|L}C]}D{[QV]|[N{I|L}]|[RA]|[KV]};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[DA]|[EG]}K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[DP]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}R{[TV]|[{I|L}S]}AA;[DP]{M(Oxidation (M))|F}R{[ES]|[DT]|[{I|L}C]}{[TV]|[{I|L}S]}AA 1.479;1.2476;0.92744;0.51601;0.40402;0.08384 -;-;-;-;-;- 83 NaN NaN 91644.9 NaN 4101 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6322 37.192 NaN 77785 35 0 20727 0.261 -1 RYLEKPMEI 9 38 597.8131717482389 1193.6117905632777 2 597.813232421875 MULTI HCD FTMS 0 0 0 6315 29136.556640625 0.0688764793981815 57 -1.5711669921875 7 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 KK 2 -1 13.711 0 0 1.1487 0 0 504.22651721682047 430.1848543756469 934.4113715924674 0 0 0 0 0 0.4247425010840047 0 0 0 KK 1.1487 - 3 + NaN NaN 98317.2 NaN 4102 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6323 37.195 NaN 92057 35 0 12143 0.261 + 27979 TFDWDAYI 8 32 515.7286768947597 1029.4428008563193 2 515.729248046875 MULTI HCD FTMS 0 0 0 6315 22324.814453125 0.6998739954274894 2 -0.05629730224609375 8 Unmodified _TFDWDAYI_ ENSG00000007314|ENST00000435607|SCN4A 5.230669730166228 0.5342319408533849 2 A{I|L} 2 6 20.969 0 0 2.0369 0 0 827.3189564435562 0 827.3189564435562 0 3.979400086720375 0 0 0 0 0 0 0 A{I|L} 2.0369 - 4 NaN NaN 98938.4 NaN 4103 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6324 37.198 NaN 42042 35 0 4936.3 0.261 + -1 MVTSHLALT 9 32 494.7601789624263 987.5058049916527 2 494.7603454589844 MULTI HCD FTMS 0 0 0 6315 13829.9287109375 0.15661604779546098 16 -0.44786834716796875 9 Oxidation (M) _M(Oxidation (M))VTSHLALT_ REV__ENST00000548125.5_1_12:107365165-107365225:+|nuORF 1.844237919475145 0.33703635659052655 2 K 1 -1 2.4743 0 0 0.25056 0 0 661.9188736945808 194.4704531305297 856.3893268251105 0 0 0 0 0 0 0 0 0 K 0.25056 - 2 + NaN NaN 91580.9 NaN 4104 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6325 37.202 NaN 39155 35 0 7726.4 0.261 -1 LPEVMLPV 8 34 457.2586168722705 912.5026808113411 2 457.25836181640625 MULTI HCD FTMS 0 0 0 6315 11986.1396484375 0.6082083250826996 2 -0.05629730224609375 10 Oxidation (M) _LPEVM(Oxidation (M))LPV_ ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1;NLGN1|p.R125T|1|0.05|ENSG00000169760|chr3:173604972-173604972|G/C|missense_variant;NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant 2.302733041254933 0.5385759549224092 2 {I|L}P 2 -1 20.969 0 0 2.298 0 0 0 699.3431490533811 699.3431490533811 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 2.298 + + 2 + NaN NaN 82876.4 NaN 4105 2218 6315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6327 37.207 NaN 202700 35 0 32062 0.327 + 35165 YVHMVTHF 8 42 525.2473454605481 1048.4801379878961 2 525.247314453125 MULTI HCD FTMS 0 0 0 6326 71492.578125 0.5158710517702607 9 -0.23530960083007812 1 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 74.39630413441286 0.024620164976204544 2 [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 8 0 + 79.875 0 0 7.6182 7.6182 96.614 0 0 0 6.63811573052314 6.63811573052314 6.63811573052314 79.87510972025312 0 2.3494850021680094 2 0.3807196863200844 0 + + [YV]H{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 7.6182 + + 128 NaN NaN 106212.5 NaN 4106 2219 6326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6328 37.211 NaN 72535 35 0 12161 0.261 -1 ALLSMDTPMP 10 34 546.259222186559 NaN 0 546.2454833984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _ALLSMDTPM(Oxidation (M))P_ ENST00000425451.2_1_12:48189548-48213588:-|nuORF 3.944395688203298 0.33680843299986807 2 KWR 3 -1 14.693 0 0 1.3473 0 0 261.0974105822991 356.12473474674067 617.2221453290398 0 0 0 0 0 0 0 0 0 KWR 1.3473 - 41 + NaN NaN 97567.6 NaN 4107 2219 6326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6329 37.215 NaN 41096 35 0 4809.7 0.262 + 16410 LSKILRAKKHK 11 33 441.29757465645827 NaN 0 441.2975769042969 PEAK HCD FTMS 0 0 0 6326 17549.798828125 0.4506418269177724 424 -10.767005920410156 3 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 G 1 11 6.9897 0 0 0.79376 0 0 489.84449516076967 330.69724451236567 820.5417396731353 0 0 0 0 0 0 0 0 0 G 0.79376 - 1 + NaN NaN 85382.5 NaN 4108 2219 6326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6330 37.218 NaN 31144 35 0 6149.5 0.261 + 21373 PTQGPDRFAA 10 17 530.2651713974302 1058.5157898616603 2 530.2655029296875 MULTI HCD FTMS 0 0 0 6326 18386.302734375 1 0 0 4 Unmodified _PTQGPDRFAA_ REV__ENST00000211413.9_1_6:32116492-32119704:-|nuORF;REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF;REV__ENST00000467780.5_1_6:32116492-32117557:-|nuORF;REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF;REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF 5.731851221503515 0.44496410492002586 2 A 1 -1 5.4846 0 0 0.51814 0 0 107.06727869366394 877.3899406155946 984.4572193092586 0 0 0 0 0 0 0 0 0 A 0.51814 + + 2 + NaN NaN 81434.8 NaN 4109 2219 6326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6331 37.222 NaN 34106 35 0 3704 0.261 + 31501 VYFYEFRH 8 22 580.7819487874696 1159.549344641739 2 581.28271484375 MULTI HCD FTMS 0 0 0 6326 13264.626953125 0.7922213916803029 -1 0.036441802978515625 5 Unmodified _VYFYEFRH_ CES5A|p.Q440E|1|0.35|ENSG00000159398|chr16:55849729-55849729|G/C|missense_variant;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A 5.230669730166228 0.5342319408533849 2 [YV]{I|L} 3 6 30.458 0 0 2.6267 0 0 0 781.2881563775999 781.2881563775999 12.385606273598313 0 0 0 0 0 2 0 0 [YV]{I|L} 2.6267 - 13 + NaN NaN 93052.4 NaN 4110 2219 6326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6333 37.227 NaN 941710 35 0 96195 0.327 + 1559 AYVHMVTHF 9 87 560.7657330135318 1119.5169130938634 2 560.765869140625 MULTI HCD FTMS 0 0 0 6332 435711.9375 0.3869456596911935 12 -0.3317375183105469 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 100.5 0 0 8.9771 8.9771 90.308 0 0 0 3.750612633917001 3.750612633917001 3.750612633917001 3.750612633917001 0 2.9049471895720984 1.6989700043360187 0.5866968715561641 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]VPH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}APH{M(Oxidation (M))|F};A[KC]EWVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}[VS]VTH{M(Oxidation (M))|F};A[KC]TV{[YC]|[HE]}W{M(Oxidation (M))|F} 8.9771;8.642;8.175;5.4256;4.9078;3.5726;3.5133;3.3424;2.9601;2.4918 +;+;-;-;-;-;-;-;-;- + 1334 + NaN NaN 237196.7 NaN 4111 2220 6332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6334 37.231 NaN 111960 35 0 28212 0.261 + 13078 KYLEERAMRQF 11 34 490.92211440140693 1469.7445138044209 3 490.9222717285156 MULTI HCD FTMS 0 0 0 6332 29112.673828125 0.19894976729892708 9 -0.2486572265625 2 Unmodified _KYLEERAMRQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 0.8449412413469082 0.4152150412513042 2 KY 2 9 20.969 0 0 1.4267 0 0 0 1175.5613898972952 1175.5613898972952 20.969100130080562 0 0 0 0 0 0 0 0 + KY 1.4267 + + 1 + NaN NaN 103620.6 NaN 4112 2220 6332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6335 37.235 NaN 66222 35 0 5824.4 0.261 -1 MPTTERVTL 9 39 532.2760442456869 1062.5375355581737 2 532.2760620117188 MULTI HCD FTMS 0 0 0 6332 24889.064453125 0.5646958002503535 -9 0.24842071533203125 3 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 17.11289562659939 0.2125047172822487 2 T[EP] 3 -1 15.942 0 0 1.5004 0 0 717.3991566388687 0 717.3991566388687 0 0.9936247538460936 0 0 0 0.5 0 0.5 0 T[EP] 1.5004 - 13 NaN NaN 85105.4 NaN 4113 2220 6332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6336 37.238 NaN 47635 35 0 10117 0.261 -1 0 22 527.1555306623482 1052.2965083914962 2 527.1552124023438 MULTI HCD FTMS 0 0 0 6332 11161.5634765625 0.5084302118936496 -3 0.079498291015625 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90287 NaN 4114 2220 6332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6337 37.241 NaN 32785 35 0 6202.4 0.261 -1 VCFTYGTWF 9 23 590.7594639728247 1179.5043750124494 2 590.759033203125 MULTI HCD FTMS 0 0 0 6332 11052.8291015625 0.33941657914924067 -4 0.1126251220703125 5 Carbamidomethyl (C) _VC(Carbamidomethyl (C))FTYGTWF_ ENSG00000160285|ENST00000397728|LSS;nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS 1.844237919475145 0.33703635659052655 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7778 0 0 915.3505116193375 0 915.3505116193375 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.7778 - 1 NaN NaN 91670.8 NaN 4115 2220 6332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6338 37.245 NaN 18713 35 0 2453 0.261 + 32457 WDWVAKFPS 9 15 568.2828773698955 1134.5512018065908 2 568.7835693359375 MULTI HCD FTMS 0 0 0 6332 8742.9208984375 0.8455176543197634 1 -0.023166656494140625 6 Unmodified _WDWVAKFPS_ REV__ENSG00000055118|ENST00000262186|KCNH2;REV__ENSG00000173826|ENST00000314672|KCNH6;REV__ENSG00000184611|ENST00000332142|KCNH7;REV__ENST00000461280.1_1_7:150646989-150652738:-|nuORF;REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF;REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant;REV__nc|ENSG00000055118|Q12809-2|KCNH2;REV__nc|ENSG00000055118|Q12809-4|KCNH2;REV__nc|ENSG00000055118|Q12809-5|KCNH2;REV__nc|ENSG00000055118|Q12809-6|KCNH2;REV__nc|ENSG00000055118|Q12809-7|KCNH2;REV__nc|ENSG00000173826|Q9H252-1|KCNH6;REV__nc|ENSG00000173826|Q9H252-2|KCNH6;REV__nc|ENSG00000173826|Q9H252-3|KCNH6;REV__nc|ENSG00000184611|Q9NS40-2|KCNH7 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91751.6 NaN 4116 2220 6332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6340 37.25 NaN 290940 35 0 25454 0.327 + 9022 HPEKLATVL 9 68 504.2977948624576 1006.5810367917152 2 504.2978820800781 MULTI HCD FTMS 0 0 0 6339 100419.234375 0.04469161101312587 30 -0.8377418518066406 1 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 29.84058131909904 0.11198220037953927 2 HP 2 7 23.583 0 0 2.3429 0 0 0 769.4448946588499 769.4448946588499 3.7577904997149822 0 0 0 0 0.5 0 0 0 + HP 2.3429 + + 68 + NaN NaN 119828.1 NaN 4117 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6341 37.254 NaN 161440 35 0 24013 0.261 -1 VDCGTEETSL 10 36 555.7344772004384 1109.4544014676767 2 555.734619140625 MULTI HCD FTMS 0 0 0 6339 70355.2734375 0.44460938201222605 11 -0.30857086181640625 2 Carbamidomethyl (C) _VDC(Carbamidomethyl (C))GTEETSL_ ENSG00000101298|ENST00000381867|SNPH;nc|ENSG00000101298|O15079|SNPH 13.042465956692817 0.38911719078024076 2 TS{I|L} 3 -1 38.188 0 0 3.442 0 0 790.2808461281462 0 790.2808461281462 0 27.21848749616356 0 0 0 1 0 0.5 0 TS{I|L} 3.442 + + 30 NaN NaN 111329.1 NaN 4118 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6342 37.258 NaN 143080 35 0 10175 0.261 + 26892 SYISRTNQL 9 50 541.2853847709828 1080.5562166087655 2 541.2854614257812 MULTI HCD FTMS 0 0 0 6339 60289.86328125 0.07005919810128568 12 -0.3351249694824219 3 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 42.312485326615175 0.05472917415473307 2 TNQ{I|L} 4 5 37.467 0 0 3.4674 0 0 606.3109608380875 0 606.3109608380875 0 17.762072326155685 0 0 0 0.7302046884880937 0 0 0.4247425010840047 + TNQ{I|L} 3.4674 + + 33 NaN NaN 110788.2 NaN 4119 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6343 37.261 NaN 242590 35 0 36857 0.263 -1 VYTRHMTWI 9 58 408.20615158123456 1221.5966253439037 3 408.2063903808594 MULTI HCD FTMS 0 0 0 6339 78380.7734375 0.7268495335233204 -3 0.07946395874023438 4 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 23.789781309258295 0.1548179064208189 2 VY 2 -1 42.206 0 0 3.455 0 0 0 956.4386499845599 956.4386499845599 13.494850021680094 0 0 0 0 0.4247425010840047 2 0 0 VY 3.455 + + 32 + NaN NaN 116940.6 NaN 4120 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6344 37.265 NaN 114550 35 0 23249 0.261 + 23972 RVPNEEDPSL 10 33 578.2877999432368 1154.5610469532735 2 578.28564453125 MULTI HCD FTMS 0 0 0 6339 57683.51953125 0.8566230850095814 -1 0.023166656494140625 5 Unmodified _RVPNEEDPSL_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 37.07464296494664 0.1707926854601146 2 ED[PS]{I|L} 5 5 40.273 0 0 3.4882 0 0 595.3085804669937 0 595.3085804669937 0 35.21144069483583 0 0 0 1 0 0.805462187404089 0 + ED[PS]{I|L} 3.4882 + + 14 NaN NaN 101486.1 NaN 4121 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6345 37.268 NaN 85892 35 0 7517.2 0.261 + 34812 YREIHDTTL 9 30 574.2907273567691 1146.5669017803382 2 574.291015625 MULTI HCD FTMS 0 0 0 6339 37124.59375 0.00904599111399828 69 -1.8722190856933594 6 Unmodified _YREIHDTTL_ REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant;REV__ENSG00000137628|ENST00000393743|DDX60 10.073929032068715 0.27331982688540024 2 T{I|L} 2 -1 30.217 0 0 2.6354 0 0 914.4234464093906 0 914.4234464093906 0 23.226825097560422 0 0 0 0.5 0 0.4247425010840047 0 T{I|L} 2.6354 + + 6 NaN NaN 107379.1 NaN 4122 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6346 37.271 NaN 37579 35 0 5726.2 0.261 + 9408 HPTTSFFIYI 10 31 613.3160730684439 1224.6175932036876 2 613.315673828125 MULTI HCD FTMS 0 0 0 6339 14593.4423828125 0.049459446238460984 38 -1.0632820129394531 7 Unmodified _HPTTSFFIYI_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|22|1|sense;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|102|2|sense;REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|93|2|sense 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 76448.5 NaN 4123 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6347 37.275 NaN 21468 35 0 4269.5 0.261 + -1 FLCAATLLFMS 11 15 645.3173687658018 1288.6201845984035 2 645.8193359375 MULTI HCD FTMS 0 0 0 6339 3268.139892578125 0.13500643893416658 -5 0.13579177856445312 8 Carbamidomethyl (C),Oxidation (M) _FLC(Carbamidomethyl (C))AATLLFM(Oxidation (M))S_ REV__ENSG00000174106|ENST00000308330|LEMD3 1.3295316138638542 0.4130897924953357 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91085 NaN 4124 2221 6339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6349 37.28 NaN 250230 35 0 49191 0.327 + 25994 SPDSGVYEM 9 33 500.70008405455576 999.3856151759115 2 500.70001220703125 MULTI HCD FTMS 0 0 0 6348 128368.6484375 0.8396289200249653 -2 0.05303955078125 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 71.13359017698441 0.008721403657255008 2 SSRYE{M(Oxidation (M))|F} 6 4 67.428 0 0 6.7469 0 0 212.07934767890782 0 212.07934767890782 0 52.72283485483939 0 0 0 1.8494850021680094 0 1.2302046884880937 0 SSRYE{M(Oxidation (M))|F} 6.7469 - 73 NaN NaN 120794.4 NaN 4125 2222 6348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6350 37.284 NaN 180270 35 0 42002 0.261 + -1 LPKELPEAM 9 36 522.2754991688437 1042.5364454044873 2 522.2755126953125 MULTI HCD FTMS 0 0 0 6348 68968.9375 0.7990268335796721 -3 0.07289505004882812 2 Oxidation (M) _LPKELPEAM(Oxidation (M))_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;REV__FRY|p.I84M|1|0.25|ENSG00000073910|chr13:32079015-32079015|C/G|missense_variant;REV__FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant 19.256988751693697 0.19398022840297344 2 {I|L}PG 3 -1 46.682 0 0 4.4778 0 0 0 772.3694552057249 772.3694552057249 26.989700043360187 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}PG 4.4778 - 9 + NaN NaN 112841.3 NaN 4126 2222 6348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6351 37.288 NaN 152780 35 0 22419 0.262 + 20505 PDGHGLVL 8 39 404.22027587890625 NaN 0 404.2274169921875 PEAK HCD FTMS 0 0 0 6348 2037.9169921875 0.6175761441365244 -1 0.029872894287109375 3 Unmodified _PDGHGLVL_ REV__ENST00000590278.1_1_19:33695337-33695988:+|nuORF 18.13498045792455 0.38579626240450227 2 HGG 3 -1 14.693 0 0 1.822 0 0 131.0814225460678 421.2317293756469 552.3131519217147 0 0 0 0 0 0 0 0 0 HGG 1.822 - 20 + NaN NaN 107520 NaN 4127 2222 6348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6352 37.291 NaN 217200 35 0 28849 0.261 + 31633 VYISEHEHF 9 44 580.7719641575784 1159.5293753819567 2 580.7721557617188 MULTI HCD FTMS 0 0 0 6348 80088 0.2733931690964811 -4 0.10933685302734375 4 Unmodified _VYISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 61.357469665136826 0.01568246967499496 2 VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F} 9 0 + 73.936 0 0 6.3763 6.3763 93.18 0 0 0 52.966518529942306 8.256886463274284 8.256886463274284 35.5115252244738 0 2.079689690656103 2 0.3807196863200844 0 + + VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F};[YV][HD][{I|L}T]EH{M(Oxidation (M))|F} 6.3763;3.3138 +;- + 111 + NaN NaN 129414.9 NaN 4128 2222 6348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6353 37.295 NaN 82918 35 0 6910.4 0.261 -1 0 36 495.7331340605161 1978.9034303756644 4 496.23291015625 MULTI HCD FTMS 0 0 0 6348 11485.9228515625 0.5243469260871221 3 -0.06956100463867188 5 NaN NaN 2 A 1 -1 5.4846 0 0 0.27715 0 0 1277.6171277407018 627.2267550104124 1904.843882751114 0 0 0 0 0 0 0 0 0 A 0.27715 - 11 + NaN NaN 95149.4 NaN 4129 2222 6348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6354 37.298 NaN 47412 35 0 5501 0.261 + 28796 TTQGLDGLSER 11 18 588.7969652086255 1175.5793774840508 2 588.7970581054688 MULTI HCD FTMS 0 0 0 6348 21013.927734375 0.7892682972633286 -2 0.05303955078125 6 Unmodified _TTQGLDGLSER_ ENSG00000109107|ENST00000226253|ALDOC;ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 11.517880264261096 0.3567267433909682 2 D{[VA]|[{I|L}G]}Q[PS] 6 8 21.923 0 0 1.8649 0 0 560.28911025215 0 560.28911025215 0 21.923487412610356 0 0 0 0.5 0 0.4247425010840047 0 D{[VA]|[{I|L}G]}Q[PS] 1.8649 - 8 NaN NaN 101386.1 NaN 4130 2222 6348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6356 37.303 NaN 454620 35 0 133170 0.327 + 31951 VYPDGIRHI 9 53 535.2930334701574 1068.5715140071147 2 535.2932739257812 MULTI HCD FTMS 0 0 0 6355 162297.890625 0.2887996109695899 6 -0.1724090576171875 1 Unmodified _VYPDGIRHI_ ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF 38.175570920033316 0.07371992880350783 2 [YV]PDVARH{I|L} 9 2 + 67.7 0 0 6.3355 6.3355 91.952 0 0 0 46.73061874357607 6.879617791072832 6.879617791072832 19.719712763997563 0 1.4049471895720984 2 0.3807196863200844 0 [YV]PDVARH{I|L};[YV]P[TP]SRH{I|L};[YV]{I|L}{[ES]|[DT]|[{I|L}C]}RR{M(Oxidation (M))|F};[YV]{I|L}{[ES]|[DT]|[{I|L}C]}[KA]{I|L}{M(Oxidation (M))|F};[YV]{I|L}{[NV]|[RG]}[DP]H{I|L};[YV][KS]{[ES]|[DT]|[{I|L}C]}{I|L}M{I|L};[YV][KS]{[ES]|[DT]|[{I|L}C]}M{I|L}{I|L} 6.3355;4.4901;3.6181;3.4962;3.4772;3.4283;2.9765 -;-;-;-;-;-;- 133 + NaN NaN 156797.5 NaN 4131 2223 6355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6357 37.308 NaN 71718 35 0 10335 0.261 + 26414 STDYETHEF 9 34 564.7274377581141 1127.440322583028 2 564.7272338867188 MULTI HCD FTMS 0 0 0 6355 42240.66015625 0.8287448123979312 -3 0.0762481689453125 2 Unmodified _STDYETHEF_ ENSG00000163069|ENST00000381431|SGCB;nc|ENSG00000163069|Q16585-2|SGCB 34.40172386719151 0.0910440009062557 2 {[MG]|[TS]}DYET 6 3 41.911 0 0 3.7174 0 0 0 428.1572664850219 428.1572664850219 41.91122510072759 0 0 0 0 1.3494850021680094 0 0 0 + {[MG]|[TS]}DYET 3.7174 + + 42 + NaN NaN 95204.9 NaN 4132 2223 6355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6358 37.311 NaN 90095 35 0 9913.7 0.261 -1 TPMYMFLG 8 45 496.21459483903317 990.4146367448664 2 496.2148742675781 MULTI HCD FTMS 0 0 0 6355 21810.94921875 0.807749478014097 1 -0.023159027099609375 3 2 Oxidation (M) _TPM(Oxidation (M))YM(Oxidation (M))FLG_ ENSG00000130538|ENST00000643195|OR11H1;ENSG00000257115|ENST00000550708|OR11H12;ENSG00000258453|ENST00000556246|OR11H2;nc|ENSG00000130538|Q8NG94|OR11H1;nc|ENSG00000258453|Q8NH07|OR11H2 6.354104778181461 0.5325651638111438 2 TSTA 4 -1 24.157 0 0 2.439 0 0 0 627.2274263971311 627.2274263971311 4.69273760456403 0 0 0 0 0 0 0 0 TSTA 2.439 - 21 + NaN NaN 93806.7 NaN 4133 2223 6355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6359 37.314 NaN 72090 35 0 13421 0.261 + 21222 PQSARYLRP 9 26 544.3040779656759 1086.5936029981517 2 544.304443359375 MULTI HCD FTMS 0 0 0 6355 21313.94921875 0.6102602421906316 -1 0.0232086181640625 4 Unmodified _PQSARYLRP_ REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF 10.823927491677226 0.26684000660059787 2 {I|L}[RP] 3 -1 15.458 0 0 1.4226 0 0 702.3459149007998 0 702.3459149007998 0 13.863781092484688 0 0 0 0.5 0 0 0 {I|L}[RP] 1.4226 + + 6 + NaN NaN 97790.2 NaN 4134 2223 6355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6360 37.318 NaN 40474 35 0 6003.2 0.261 + -1 SPDEMGNEQ 9 26 511.6909238323237 1021.3672947314474 2 511.6899108886719 MULTI HCD FTMS 0 0 0 6355 11719.80078125 0.49623954444663043 -3 0.0762481689453125 5 Oxidation (M) _SPDEM(Oxidation (M))GNEQ_ REV__ENSG00000101361|ENST00000329276|NOP56;REV__ENST00000462630.5_1_20:2637388-2638937:+|nuORF;REV__ENST00000467196.5_3_20:2638092-2638937:+|nuORF;REV__ENST00000492135.5_1_20:2636822-2638937:+|nuORF 2.9952420565917617 0.3283108881486655 2 SPDS 4 -1 31.938 0 0 3.127 0 0 0 632.2006319635374 632.2006319635374 31.938200260161125 0 0 0 0 0 0 0 0 SPDS 3.127 - 6 + NaN NaN 101087.9 NaN 4135 2223 6355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6361 37.321 NaN 12045 35 0 2931.4 0.261 -1 RRITLMMMG 9 12 570.7899444466206 NaN 0 570.7898559570312 PEAK HCD FTMS 0 0 0 6355 11535.4814453125 1 0 0 6 2 Oxidation (M) _RRITLMM(Oxidation (M))M(Oxidation (M))G_ ENSG00000159164|ENST00000369146|SV2A;nc|ENSG00000159164|Q7L0J3-2|SV2A 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82437.4 NaN 4136 2223 6355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6363 37.326 NaN 526760 35 0 83162 0.327 + 26121 SPLGKEDTL 9 50 480.2558257644321 958.4970985956642 2 480.2557678222656 MULTI HCD FTMS 0 0 0 6362 393622.71875 0.769800460037279 2 -0.049724578857421875 1 Unmodified _SPLGKEDTL_ ENSG00000155561|ENST00000285968|NUP205 90.13494162714682 0.004522430935000059 2 SP{I|L}[DV]NTT{I|L} 9 4 + 67.386 0 0 7.0304 7.0304 95.336 0 0 0 51.72430902965729 6.567270949552082 6.567270949552082 67.38614676430188 0 2.004432191740108 1.6989700043360187 1.1989700043360187 0 SP{I|L}[DV]NTT{I|L} 7.0304 - 92 + NaN NaN 169244 NaN 4137 2224 6362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6364 37.331 NaN 80685 35 0 8147.3 0.261 + 9002 HPEGLLSPHL 10 35 550.2985974956886 1098.582642058177 2 550.298828125 MULTI HCD FTMS 0 0 0 6362 31596.009765625 0.6290670322999863 2 -0.049724578857421875 2 Unmodified _HPEGLLSPHL_ REV__ENSG00000105122|ENST00000343625|RASAL3;REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF;REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 18.1463463914782 0.3413772152514074 2 EC{I|L} 3 -1 28.232 0 0 2.5698 0 0 735.4278431623062 0 735.4278431623062 0 28.2319095436452 0 0 0 0.4247425010840047 0 0.3807196863200844 0 EC{I|L} 2.5698 - 11 NaN NaN 102814.8 NaN 4138 2224 6362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6365 37.334 NaN 55149 35 0 17223 0.261 -1 RYLEKPMEI 9 23 597.8131717482389 1193.6117905632777 2 597.8131713867188 MULTI HCD FTMS 0 0 0 6362 22458.423828125 0.05308990987482381 63 -1.7300224304199219 3 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 K 1 -1 10.485 0 0 0.87839 0 0 504.224108533784 558.2658175104124 1062.4899260441964 0 0 0 0 0 0.5 0 0 0 K 0.87839 + + 2 + NaN NaN 96901.3 NaN 4139 2224 6362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6366 37.338 NaN 25419 35 0 4360.4 0.262 + -1 LAMYLLKC 8 17 485.7590060227388 969.5034591122776 2 485.7591857910156 MULTI HCD FTMS 0 0 0 6362 12053.1845703125 0.24231199572736392 6 -0.17252731323242188 4 Oxidation (M) _LAM(Oxidation (M))YLLKC_ REV__ENSG00000174791|ENST00000311320|RIN1;REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF;REV__nc|ENSG00000174791|Q13671-2|RIN1 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101333.1 NaN 4140 2224 6362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6367 37.341 NaN 31507 35 0 5270.9 0.261 -1 ANQEKMTQIMF 11 23 452.88148354716884 NaN 0 452.86968994140625 PEAK HCD FTMS 0 0 0 6362 2391.525634765625 1 0 0 5 Oxidation (M) _ANQEKMTQIM(Oxidation (M))F_ ACTA2|p.R118Q|1|0.52|ENSG00000107796|chr10:88943813-88943813|C/T|missense_variant 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97100.2 NaN 4141 2224 6362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6368 37.344 NaN 47243 35 0 8234.7 0.261 + 23646 RPVELSDRETL 11 38 438.9051126144748 1313.6935084436243 3 438.9048156738281 MULTI HCD FTMS 0 0 0 6362 9856.5908203125 0.4416184093483632 -2 0.046367645263671875 6 Unmodified _RPVELSDRETL_ ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4 1.6478858908839955 0.4116935987829426 2 {I|L} 1 10 8.8515 0 0 0.67379 0 0 719.3483679180368 478.24506555728755 1197.5934334753244 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.67379 + + 5 + NaN NaN 97588.5 NaN 4142 2224 6362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6370 37.349 NaN 148640 35 0 24746 0.327 + 31679 VYKEEHPF 8 46 524.7578964511833 1047.5012399691666 2 525.2471313476562 MULTI HCD FTMS 0 0 0 6369 6199.4169921875 0.5179273159413876 -12 0.3114204406738281 1 Unmodified _VYKEEHPF_ ENSG00000170296|ENST00000302386|GABARAP 14.581692164780916 0.48650662947107914 2 [YV]H 3 5 24.437 0 0 2.3329 0 0 0 645.2876528932478 645.2876528932478 5.993624753846092 0 0 0 0 0 2 0 0 [YV]H 2.3329 - 50 NaN NaN 108201.9 NaN 4143 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6371 37.354 NaN 46209 35 0 4228 0.261 + 30183 VHFQQELS 8 39 494.2484147556007 986.4822765780015 2 494.2484436035156 MULTI HCD FTMS 0 0 0 6369 20526.837890625 0.7492051350687614 1 -0.026531219482421875 2 Unmodified _VHFQQELS_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B 3.944395688203298 0.5361403129012058 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90200.1 NaN 4144 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6372 37.357 NaN 108910 35 0 22467 0.262 + 11201 IYKEEREYF 9 35 426.2117774143435 1275.6135028432304 3 426.5459899902344 MULTI HCD FTMS 0 0 0 6369 30448.125 0.6284003464347621 -3 0.06956100463867188 3 Unmodified _IYKEEREYF_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 9.5439744041441 0.27789851728676895 2 {I|L}Y 2 7 45.217 0 0 3.5447 0 0 0 996.4415873985882 996.4415873985882 23.226825097560422 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.5447 + + 7 + NaN NaN 96336.2 NaN 4145 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6373 37.361 NaN 68769 35 0 7293.6 0.261 -1 FPDSEPPRM 9 33 546.245054301141 1090.4755556690818 2 546.2456665039062 MULTI HCD FTMS 0 0 0 6369 7517.72607421875 0.1586208225932927 26 -0.7383079528808594 4 Oxidation (M) _FPDSEPPRM(Oxidation (M))_ ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR 17.11289562659939 0.2125047172822487 2 M{I|L}DRE 5 -1 31.031 0 0 2.8456 0 0 0 443.15766321353755 443.15766321353755 20.06142047872684 0 0 0 0 0.7429928190999391 0 0.28872548999643577 0 M{I|L}DRE 2.8456 - 23 + NaN NaN 92718.2 NaN 4146 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6374 37.364 NaN 60510 35 0 10159 0.262 -1 NGLLIEYEDMF 11 32 453.8762067733931 1358.6067909203794 3 453.8763732910156 MULTI HCD FTMS 0 0 0 6369 10170.5869140625 0.45223964267848704 -12 0.3114204406738281 5 Oxidation (M) _NGLLIEYEDM(Oxidation (M))F_ ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD 1.1097533296519684 0.4140536653900533 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.6185 0 0 1193.5279162639324 0 1193.5279162639324 0 21.989700043360187 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6185 + + 2 + NaN NaN 90127.3 NaN 4147 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6375 37.367 NaN 52175 35 0 15003 0.261 -1 0 25 527.1555306623482 1052.2965083914962 2 527.1552734375 MULTI HCD FTMS 0 0 0 6369 13043.369140625 0.5941499996752649 2 -0.05304718017578125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87753.7 NaN 4148 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6376 37.371 NaN 40272 35 0 8522.9 0.262 + 23524 RNLQAWVYLV 10 28 421.2404676763893 1260.699573629368 3 421.5745849609375 MULTI HCD FTMS 0 0 0 6369 6204.349609375 0.2941793345172887 -4 0.09943389892578125 7 Unmodified _RNLQAWVYLV_ REV__ENSG00000136986|ENST00000259512|DERL1;REV__ENST00000524119.1_1_8:124031433-124042893:-|nuORF;REV__nc|ENSG00000136986|Q9BUN8-2|DERL1 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87887.7 NaN 4149 2225 6369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6378 37.376 NaN 696180 35 0 81886 0.327 + 1560 AYVHMVTHF 9 69 560.7657330135318 1119.5169130938634 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6377 338249.125 0.30039119782687607 18 -0.5391845703125 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 104.79918948944588 0.003791450360204016 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 99.575 0 0 8.8945 8.8945 88.778 0 0 0 0.4524904595219681 0.4524904595219681 0.4524904595219681 0.4524904595219681 0 2.973197507588033 2 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};A[KC]EWVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}[VS]VTH{M(Oxidation (M))|F};A[KC]TVWEH{M(Oxidation (M))|F} 8.8945;8.854;7.7119;4.7694;4.6818;3.6227;3.4928;3.1567;2.7698 +;+;-;-;-;-;-;-;- + 1130 + NaN NaN 197215 NaN 4150 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6379 37.38 NaN 97757 35 0 10351 0.261 -1 MPTTERVTL 9 41 532.2760442456869 1062.5375355581737 2 532.2764892578125 MULTI HCD FTMS 0 0 0 6377 33772.78125 0.7662541021004243 -3 0.07288360595703125 2 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 9.38312468134398 0.279288223203164 2 A{M(Oxidation (M))|F} 2 -1 17.474 0 0 1.6446 0 0 826.4548614632503 0 826.4548614632503 0 5.484550065040281 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.6446 - 14 + NaN NaN 109258.8 NaN 4151 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6380 37.384 NaN 103720 35 0 27035 0.261 + 33605 YISEHEHF 8 31 531.2381957045413 1060.4618384758826 2 531.2384643554688 MULTI HCD FTMS 0 0 0 6377 27649.0546875 0.7756225031578133 1 -0.026515960693359375 3 Unmodified _YISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 23.1484247019978 0.4234759064137959 2 [Y{I|L}]SEQ 5 4 44.08 0 0 4.1567 0 0 0 437.1706942193969 437.1706942193969 44.080306233405295 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]SEQ 4.1567 - 13 + NaN NaN 95344.7 NaN 4152 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6381 37.387 NaN 58440 35 0 9339.1 0.261 + 13079 KYLEERAMRQF 11 19 490.92211440140693 1469.7445138044209 3 490.9225158691406 MULTI HCD FTMS 0 0 0 6377 19280.7421875 0.13176045574515277 15 -0.4595489501953125 4 Unmodified _KYLEERAMRQF_ ENSG00000114019|ENST00000249883|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2 1.0135738785822086 0.41447547578978133 2 KY 2 9 20.969 0 0 1.4267 0 0 0 1175.5642584699292 1175.5642584699292 20.969100130080562 0 0 0 0 0 0 0 0 + KY 1.4267 + + 1 + NaN NaN 86496.6 NaN 4153 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6382 37.391 NaN 66315 35 0 12743 0.261 -1 0 39 527.1555306623482 1052.2965083914962 2 527.1552734375 MULTI HCD FTMS 0 0 0 6377 11791.736328125 0.5371357706733253 3 -0.09952545166015625 5 NaN NaN 2 N 1 -1 0.088644 0 0 0.0084238 0 0 543.572034369815 391.65281091861567 935.2248452884307 0 0 0 0 0 0 0 0 0 N 0.0084238 - 3 + NaN NaN 91651.9 NaN 4154 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6383 37.394 NaN 49150 35 0 5677.5 0.261 + -1 TTLAMYLL 8 27 471.25592041015625 NaN 0 471.25592041015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _TTLAM(Oxidation (M))YLL_ REV__ENSG00000126460|ENST00000246794|PRRG2 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94666.8 NaN 4155 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6384 37.397 NaN 31174 35 0 8055.3 0.261 + 7146 FSETNVIR 8 25 483.2564095334721 NaN 0 483.25640869140625 PEAK HCD FTMS 0 0 0 6377 7281.52880859375 0.7481857741574929 -10 0.26175689697265625 7 Unmodified _FSETNVIR_ REV__ENSG00000133858|ENST00000378743|ZFC3H1;REV__nc|ENSG00000133858|O60293-2|ZFC3H1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85178 NaN 4156 2226 6377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6386 37.403 NaN 184700 35 0 26585 0.327 -1 VYTRHMTWI 9 43 408.20615158123456 1221.5966253439037 3 408.2062072753906 MULTI HCD FTMS 0 0 0 6385 50663.00390625 0.4698139497884815 3 -0.09628677368164062 1 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 16.565877749689598 0.21723083036893404 2 VY 2 -1 40.445 0 0 3.3109 0 0 0 956.4402761882168 956.4402761882168 14.47621246364342 0 0 0 0 0.4247425010840047 2 0 0 VY 3.3109 + + 21 + NaN NaN 118570.8 NaN 4157 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6387 37.407 NaN 179590 35 0 32794 0.261 + 16092 LPSSQREVL 9 37 514.7902988388514 1027.5660447445027 2 514.7904052734375 MULTI HCD FTMS 0 0 0 6385 90291.0234375 0.8002678211175407 -2 0.05304718017578125 2 Unmodified _LPSSQREVL_ ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF 23.789781309258295 0.1548179064208189 2 {I|L}PSS 4 5 60.477 0 0 5.8855 0 0 0 640.3422335260374 640.3422335260374 49.508272069161734 0 0 0 0 0.5 1.6989700043360187 0.805462187404089 0 + {I|L}PSS 5.8855 + + 35 + NaN NaN 109956 NaN 4158 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6388 37.411 NaN 146110 35 0 20813 0.261 + 23973 RVPNEEDPSL 10 44 578.2877999432368 1154.5610469532735 2 578.2858276367188 MULTI HCD FTMS 0 0 0 6385 55976.56640625 0.8312741558217205 5 -0.15608978271484375 3 Unmodified _RVPNEEDPSL_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 34.93206674587334 0.18938571726943593 2 D[PS]{I|L} 4 6 30.445 0 0 2.637 0 0 724.3493450020659 0 724.3493450020659 0 0.11771241394889387 0 0 0 1 0 0.4247425010840047 0 + D[PS]{I|L} 2.637 + + 120 NaN NaN 119774.9 NaN 4159 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6389 37.414 NaN 97757 35 0 15377 0.261 -1 EKECEDTSL 9 24 555.7344772004384 1109.4544014676767 2 555.7347412109375 MULTI HCD FTMS 0 0 0 6385 35805.91015625 0.22627505813189386 17 -0.5126686096191406 4 Carbamidomethyl (C) _EKEC(Carbamidomethyl (C))EDTSL_ ENSG00000179912|ENST00000402412|R3HDM2;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000179912|Q9Y2K5|R3HDM2;R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant 17.11289562659939 0.2125047172822487 2 TS{I|L} 3 -1 38.188 0 0 3.442 0 0 790.2836781232437 0 790.2836781232437 0 38.187587626244124 0 0 0 1 0 0.5 0 TS{I|L} 3.442 + + 6 NaN NaN 99429.3 NaN 4160 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6390 37.417 NaN 214180 35 0 16253 0.261 -1 MPSASMTRL 9 61 505.24396659248976 1008.4733802517795 2 505.2438659667969 MULTI HCD FTMS 0 0 0 6385 46447.19921875 0.45277349244927106 18 -0.5459098815917969 5 Oxidation (M) _M(Oxidation (M))PSASMTRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 15.248480904072842 0.22861284681709862 2 M{[CP]|[EA]}ASMR[{I|L}T] 9 -1 + 20.154 0 0 1.9984 1.9984 82.587 0 0 0 6.966131766313881 0.4390469772252139 0.4390469772252139 6.7778070526608065 0 0 0 0 0.3252574989159953 M{[CP]|[EA]}ASMR[{I|L}T];M[RD][{M(Oxidation (M))|F}V]Q[{I|L}T] 1.9984;1.3264 -;- 66 + NaN NaN 131173.8 NaN 4161 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6391 37.42 NaN 111780 35 0 9205.1 0.261 -1 MPTTERVTL 9 49 532.2760442456869 1062.5375355581737 2 532.2760009765625 MULTI HCD FTMS 0 0 0 6385 20390.748046875 0.46263570122209535 -2 0.05304718017578125 6 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3745 0 0 897.4916351448909 0 897.4916351448909 0 1.1607435312808434 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3745 + + 31 + NaN NaN 97773.4 NaN 4162 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6392 37.424 NaN 78071 35 0 6439 0.261 + 26893 SYISRTNQL 9 35 541.2853847709828 1080.5562166087655 2 541.2852783203125 MULTI HCD FTMS 0 0 0 6385 34781.44921875 0.040417415274252924 18 -0.5459098815917969 7 Unmodified _SYISRTNQL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 11.494710602746466 0.2610445893512368 2 E{M(Oxidation (M))|F} 2 9 20.261 0 0 1.875 0 0 786.4673627042717 0 786.4673627042717 0 5.5558471418748905 0 0 0 0 0 0.3807196863200844 0 E{M(Oxidation (M))|F} 1.875 - 14 + NaN NaN 93510.6 NaN 4163 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6393 37.427 NaN 130060 35 0 12288 0.261 + 20801 PHHLLPDGTL 10 40 550.2985974956886 1098.582642058177 2 551.2835693359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _PHHLLPDGTL_ ENSG00000154133|ENST00000306534|ROBO4;ENST00000533337.1_1_11:124766750-124767703:-|nuORF;nc|ENSG00000154133|Q8WZ75-2|ROBO4 3.944395688203298 0.4544253912184634 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E 4 8 11.427 0 0 1.0401 0 0 0 585.3343870135083 585.3343870135083 2.474250108400467 0 0 0 0 0 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E 1.0401 - 34 NaN NaN 130163.4 NaN 4164 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6394 37.43 NaN 24540 35 0 5306.9 0.261 + -1 LCDLQCQPF 9 16 590.7594639728247 1179.5043750124494 2 590.759765625 MULTI HCD FTMS 0 0 0 6385 14086.3359375 0.43257123698559397 3 -0.09628677368164062 9 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))DLQC(Carbamidomethyl (C))QPF_ REV__ENST00000560936.2_1_15:60687964-60688054:-|nuORF 1.6526216038709556 0.33848895094777925 2 QQ 2 -1 9.464 0 0 0.80237 0 0 132.02628222009827 788.3344210260374 920.3607032461357 0 0 0 0 0 0 0 0 0 QQ 0.80237 - 4 + NaN NaN 79513.1 NaN 4165 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6395 37.434 NaN 48352 35 0 8191.9 0.261 -1 ECLLAEMKV 9 15 546.7763064573595 1091.538059981519 2 546.7770385742188 MULTI HCD FTMS 0 0 0 6385 8631.2734375 0.147720605577962 14 -0.4330329895019531 10 Carbamidomethyl (C) _EC(Carbamidomethyl (C))LLAEMKV_ ENSG00000167604|ENST00000606253|NFKBID 1.844237919475145 0.33703635659052655 2 PDR 3 -1 13.188 0 0 1.2082 0 0 148.1307114974956 572.2002657525999 720.3309772500954 0 0 0 0 0 0 0 0 0 PDR 1.2082 - 6 + NaN NaN 94954 NaN 4166 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6396 37.437 NaN 48774 35 0 6229 0.261 + 8295 GWRVRGPN 8 32 471.2562561035156 NaN 0 471.2562561035156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _GWRVRGPN_ REV__ENST00000465458.1_1_17:8409499-8413222:-|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102715.8 NaN 4167 2227 6385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6398 37.442 NaN 927220 35 0 201350 0.327 + 31626 VYIRGSKIRF 10 72 413.5836957806499 1237.7292579421498 3 413.583740234375 MULTI HCD FTMS 0 0 0 6397 392109.8125 1 0 0 1 Unmodified _VYIRGSKIRF_ ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3 33.4449034751529 0.20229115034201947 2 VY{I|L}R 4 6 63.8 0 0 5.1546 0 0 0 703.3877657525999 703.3877657525999 40.612431371158735 0 0 0 0 0.3807196863200844 2 0 0.805462187404089 + VY{I|L}R 5.1546 + + 73 + NaN NaN 234558.4 NaN 4168 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6399 37.447 NaN 322350 35 0 43683 0.261 + 31634 VYISEHEHF 9 46 580.7719641575784 1159.5293753819567 2 580.7722778320312 MULTI HCD FTMS 0 0 0 6397 182718.984375 0.6237404129504004 2 -0.05648040771484375 2 Unmodified _VYISEHEHF_ ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 81.61307344734483 0.005330412723537057 2 VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F} 9 0 + 84.024 0 0 7.2464 7.2464 95.97 0 0 0 64.56006414642259 9.137342758552691 9.137342758552691 84.02401429818325 0 2.1549471895720984 1.6989700043360187 1.1382104921644451 0 + + VY{I|L}S{[YC]|[HE]}EH{M(Oxidation (M))|F} 7.2464 + + 176 + NaN NaN 143927.2 NaN 4169 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6400 37.45 NaN 435510 35 0 57795 0.261 + 25995 SPDSGVYEM 9 51 500.70008405455576 999.3856151759115 2 500.7003479003906 MULTI HCD FTMS 0 0 0 6397 124157.75 0.8120864308701126 4 -0.11628341674804688 3 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 85.27202061508552 0.004649858145912257 2 VYE{M(Oxidation (M))|F} 4 5 53.633 0 0 5.3666 0 0 443.16730570501153 0 443.16730570501153 0 38.97406744399382 0 0 0 1.6694451763165201 0 0.8494850021680094 0 + VYE{M(Oxidation (M))|F} 5.3666 + + 233 + NaN NaN 152892.2 NaN 4170 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6401 37.454 NaN 175060 35 0 34999 0.261 -1 PLKVYCNM 8 46 520.7489341996633 1039.4833154661264 2 522.275634765625 MULTI HCD FTMS 0 0 0 6397 11306.1142578125 0.6574789296530669 -2 0.06632232666015625 4 Carbamidomethyl (C),Oxidation (M) _PLKVYC(Carbamidomethyl (C))NM(Oxidation (M))_ ENSG00000174469|ENST00000361727|CNTNAP2 10.183394434864962 0.5188676124868831 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.1754 0 0 874.4373082413202 0 874.4373082413202 0 -0.9691001300805624 -0.9691001300805624 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1754 + + 20 + NaN NaN 109888 NaN 4171 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6402 37.457 NaN 235400 35 0 18725 0.261 + 9023 HPEKLATVL 9 62 504.2977948624576 1006.5810367917152 2 504.2978515625 MULTI HCD FTMS 0 0 0 6397 74326.09375 0.03307885078664867 37 -1.0166969299316406 5 Unmodified _HPEKLATVL_ ENSG00000164934|ENST00000612750|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13 22.736283301280096 0.1639198954644489 2 HP 2 7 22.391 0 0 2.2244 0 0 0 769.4441012018186 769.4441012018186 6.817496819840656 0 0 0 0 0.3807196863200844 0 0 0 + HP 2.2244 + + 50 + NaN NaN 136612.6 NaN 4172 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6403 37.46 NaN 223430 35 0 20641 0.261 + 21480 PYFALQSLY 9 51 551.2840149723551 1100.55347701151 2 551.7713012695312 MULTI HCD FTMS 0 0 0 6397 6001.22265625 0.07074788674539449 12 -0.35999298095703125 6 Unmodified _PYFALQSLY_ REV__ENSG00000165972|ENST00000344280|CCDC38 8.593279151180031 0.2858735984551981 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EHM 8 -1 21.476 0 0 1.9514 0 0 0 109.08827125762141 109.08827125762141 15.991531334132887 0 0 0 0 0 0 0.9247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EHM 1.9514 - 88 NaN NaN 124576.5 NaN 4173 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6404 37.464 NaN 85356 35 0 12768 0.261 + 19075 NELVSTHGY 9 23 510.24341309054904 1018.4722732478981 2 510.24346923828125 MULTI HCD FTMS 0 0 0 6397 41299.79296875 0.9779800754800755 1 -0.033203125 7 Unmodified _NELVSTHGY_ ENSG00000105325|ENST00000441788|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 26.268140514670165 0.13340543277302316 2 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V 4 5 39.253 0 0 3.8541 0 0 0 560.2115352017216 560.2115352017216 34.5597718523608 0 0 0 0 1.5 0 0.4247425010840047 0.3807196863200844 + {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V 3.8541 + + 16 NaN NaN 86896.1 NaN 4174 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6405 37.467 NaN 26410 35 0 4746.2 0.262 -1 SMEDICQEW 9 22 405.15421090114774 1212.4408033036432 3 405.15460205078125 MULTI HCD FTMS 0 0 0 6397 19176.990234375 0.5314789686601988 3 -0.08975601196289062 8 Carbamidomethyl (C),Oxidation (M) _SM(Oxidation (M))EDIC(Carbamidomethyl (C))QEW_ ENSG00000137561|ENST00000260116|TTPA 0.26902006276349055 0.3489776809129786 2 C(Carbamidomethyl (C)) 1 -1 2.7642 0 0 0.22799 0 0 818.2677514011026 231.11394678287346 1049.3816981839761 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.22799 + + 3 + NaN NaN 88433.4 NaN 4175 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6406 37.47 NaN 58145 35 0 8426.1 0.261 + 16411 LSKILRAKKHK 11 34 441.29757465645827 NaN 0 441.2976379394531 PEAK HCD FTMS 0 0 0 6397 17851.658203125 0.4583929391415921 433 -11.033859252929688 9 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 G 1 11 6.9897 0 0 0.79376 0 0 489.84510551233217 330.69745813541255 820.5425636477447 0 0 0 0 0 0 0 0 0 G 0.79376 - 1 + NaN NaN 113713.4 NaN 4176 2228 6397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6408 37.476 NaN 97281 35 0 13581 0.327 + 26123 SPLQDVSTI 9 28 480.2558257644321 958.4970985956642 2 480.2556457519531 MULTI HCD FTMS 0 0 0 6407 68410.2578125 0.1337886392903518 7 -0.19940567016601562 1 Unmodified _SPLQDVSTI_ ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH;nc|ENSG00000134444|Q9P260|RELCH 28.494509381512117 0.11816142465008336 2 SP{I|L} 3 6 53.188 0 0 5.5491 0 0 0 658.3051699988758 658.3051699988758 28.96591250700361 0 0 0 0 1 1.6989700043360187 0 0 + SP{I|L} 5.5491 + + 10 + NaN NaN 102396 NaN 4177 2229 6407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6409 37.48 NaN 71692 35 0 6559.9 0.261 + 27899 TEEDLDLVTL 10 31 574.2907273567691 1146.5669017803382 2 574.291259765625 MULTI HCD FTMS 0 0 0 6407 35363 0.008616751092779868 77 -2.0107498168945312 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 2 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3546145829952 0 815.3546145829952 0 16.989700043360187 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 8 NaN NaN 86919.9 NaN 4178 2229 6407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6410 37.484 NaN 55177 35 0 6024.4 0.262 -1 NADPQAVTM 9 27 481.7160192777188 961.4174856222376 2 482.2082214355469 MULTI HCD FTMS 0 0 0 6407 4460.51318359375 0.42211430441920306 -5 0.14925003051757812 3 Oxidation (M) _NADPQAVTM(Oxidation (M))_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 3.2813086475875832 0.32614229037259 2 P 1 -1 6.9897 0 0 0.72702 0 0 112.97827048711004 748.3653658502561 861.3436363373662 0 0 0 0 0 0 0 0 0 P 0.72702 + + 5 + NaN NaN 87805.7 NaN 4179 2229 6407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6411 37.487 NaN 27958 35 0 7709.2 0.261 + 21397 PVLIDILQKAE 11 15 619.8721168278089 1237.7296807224177 2 619.8720703125 MULTI HCD FTMS 0 0 0 6407 15248.072265625 0.8912093932194911 1 -0.02327728271484375 4 Unmodified _PVLIDILQKAE_ KPNA5|p.E388D|1|0.24|ENSG00000196911|chr6:116726533-116726533|G/C|missense_variant 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82449 NaN 4180 2229 6407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6412 37.49 NaN 32016 35 0 4308.2 0.262 -1 ACCCCIHL 8 25 547.2041220259952 NaN 0 547.2040405273438 PEAK HCD FTMS 0 0 0 6407 11718.5107421875 0.750414018120117 1 -0.02327728271484375 5 4 Carbamidomethyl (C) _AC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))IHL_ ENST00000265022.7_1_3:186038300-186038426:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84205.3 NaN 4181 2229 6407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6413 37.494 NaN 13478 35 0 4664.6 0.261 -1 PDMFFIFPLF 10 12 645.3173687658018 1288.6201845984035 2 645.3172607421875 MULTI HCD FTMS 0 0 0 6407 5527.64453125 0.21092426904184777 4 -0.1096343994140625 6 Oxidation (M) _PDM(Oxidation (M))FFIFPLF_ tr|U7T2G6|U7T2G6_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00444PE=4SV=1 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87697 NaN 4182 2229 6407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6415 37.499 NaN 159940 35 0 32240 0.327 -1 0 45 587.7814000889653 2347.096494489461 4 588.3014526367188 MULTI HCD FTMS 0 0 0 6414 7099.62109375 0.373291092118539 -3 0.09628677368164062 1 NaN NaN 2 S{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.40322 0 0 1493.6882436123108 616.2692650692011 2109.957508681512 0 0 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 0.40322 - 28 + NaN NaN 122190.1 NaN 4183 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6416 37.503 NaN 117690 35 0 27598 0.262 -1 SSGPVDPMM 9 26 476.6913975991144 951.3682422650288 2 476.6910095214844 MULTI HCD FTMS 0 0 0 6414 41392.48046875 0.7765876074456727 -10 0.27193450927734375 2 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.5485 0 0 427.2072554890885 406.1112979443097 833.3185534333982 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 2 + NaN NaN 116359.7 NaN 4184 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6417 37.507 NaN 125850 35 0 20288 0.261 + 21719 QADPREPQF 9 34 544.2638638444525 1086.513174755705 2 544.261962890625 MULTI HCD FTMS 0 0 0 6414 61700.99609375 0.7758472995741338 -2 0.05648040771484375 3 Unmodified _QADPREPQF_ ENSG00000184014|ENST00000328194|DENND5A;ENST00000532696.1_1_11:9225120-9228222:-|nuORF;nc|ENSG00000184014|Q6IQ26-2|DENND5A 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F} 1 8 19.732 0 0 1.8161 0 0 921.434513722305 0 921.434513722305 0 6.059837384595923 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.8161 + + 54 + NaN NaN 101118.9 NaN 4185 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6418 37.51 NaN 85708 35 0 17866 0.262 + 11202 IYKEEREYF 9 37 426.2117774143435 1275.6135028432304 3 426.5461730957031 MULTI HCD FTMS 0 0 0 6414 30983.783203125 0.6394554705323665 2 -0.059803009033203125 4 Unmodified _IYKEEREYF_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 6.1918466704503565 0.30407824485930035 2 {I|L}Y 2 7 40.969 0 0 3.2117 0 0 0 996.4436492453486 996.4436492453486 18.979400086720375 0 0 0 0 0 2 0 0 + {I|L}Y 3.2117 + + 3 + NaN NaN 104506.4 NaN 4186 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6419 37.514 NaN 110460 35 0 19401 0.261 + 31680 VYKEEHPF 8 51 524.7578964511833 1047.5012399691666 2 525.2471923828125 MULTI HCD FTMS 0 0 0 6414 8384.3515625 0.7004666255144637 -7 0.19568634033203125 5 Unmodified _VYKEEHPF_ ENSG00000170296|ENST00000302386|GABARAP 9.347437153973935 0.5250182646323369 2 [YV]H 3 5 24.437 0 0 2.3329 0 0 0 645.2892092897322 645.2892092897322 7.447274948966935 0 0 0 0 0 2 0 0 [YV]H 2.3329 - 28 NaN NaN 102064.4 NaN 4187 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6420 37.517 NaN 48940 35 0 8917.4 0.261 + 16478 LSVSQVHVD 9 23 492.2615985449403 982.5086441566806 2 492.2613220214844 MULTI HCD FTMS 0 0 0 6414 10665.0556640625 0.3827557332485835 -5 0.14933395385742188 6 Unmodified _LSVSQVHVD_ chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000564350.1_1_15:89826403-89833569:+|nuORF;nc|ENSG00000140525|Q9NVI1-1|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86026.2 NaN 4188 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6421 37.52 NaN 57131 35 0 14746 0.261 -1 RYLEKPMEI 9 21 597.8131717482389 1193.6117905632777 2 597.813720703125 MULTI HCD FTMS 0 0 0 6414 20711.2734375 0.04895978669761825 69 -1.838134765625 7 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 K 1 -1 11.99 0 0 1.0045 0 0 504.2266720103465 558.2678316705686 1062.4945036809152 0 0 0 0 0 0.5 0 0 0 K 1.0045 + + 1 + NaN NaN 87328.9 NaN 4189 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6422 37.523 NaN 33536 35 0 5344.4 0.263 + -1 YPPLAPYM 8 21 484.23183707266514 966.4491212121303 2 484.73309326171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _YPPLAPYM(Oxidation (M))_ REV__ENSG00000179388|ENST00000317216|EGR3;REV__nc|ENSG00000179388|Q06889-2|EGR3 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 2.1196 0 0 801.4030224345897 0 801.4030224345897 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.1196 + + 1 + NaN NaN 95518.4 NaN 4190 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6423 37.527 NaN 18684 35 0 4107.3 0.261 + 364 AHKFYWYK 8 16 571.7949142244408 1141.5752755156816 2 571.81201171875 MULTI HCD FTMS 0 0 0 6414 4989.5244140625 0.30588421168020125 -4 0.122802734375 9 Unmodified _AHKFYWYK_ REV__ENSG00000165102|ENST00000379644|HGSNAT;REV__nc|ENSG00000165102|Q68CP4|HGSNAT 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89806.1 NaN 4191 2230 6414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6425 37.532 NaN 472900 35 0 51791 0.327 + 1561 AYVHMVTHF 9 67 560.7657330135318 1119.5169130938634 2 560.7659912109375 MULTI HCD FTMS 0 0 0 6424 211766.671875 0.18806506661130987 23 -0.6285057067871094 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 104.79918948944588 0.003791450360204016 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 103.87 0 0 9.2778 9.2778 91.542 0 0 0 6.237125054200234 6.237125054200234 6.237125054200234 6.237125054200234 0 2.9247425010840047 1.6989700043360187 1.079689690656103 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F};[NP][YK]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 9.2778;8.7207;7.6497;5.0765;4.9243;3.6044;2.8217;2.8217;1.4829 +;+;-;-;-;-;-;-;- + 528 NaN NaN 165848.8 NaN 4192 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6426 37.537 NaN 300240 35 0 38512 0.261 + 2366 DPEKSDPVI 9 40 500.25333627615305 998.4921196191061 2 500.2534484863281 MULTI HCD FTMS 0 0 0 6424 94907.6328125 0.7176662905097755 1 -0.02652740478515625 2 Unmodified _DPEKSDPVI_ ENSG00000117174|ENST00000370574|ZNHIT6;nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 19.361941925380144 0.1930734562688509 2 VP[{I|L}T]YE{M(Oxidation (M))|F} 7 8 44.469 0 0 4.4536 0 0 131.09554940841048 0 131.09554940841048 0 30.744944827498415 0 0 0 0.4247425010840047 0 0.8494850021680094 0 VP[{I|L}T]YE{M(Oxidation (M))|F} 4.4536 - 49 + NaN NaN 126946.2 NaN 4193 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6427 37.54 NaN 405180 35 0 28553 0.261 + 3029 EADRNPPVL 9 70 505.7667764932549 1009.5190000533098 2 505.7668762207031 MULTI HCD FTMS 0 0 0 6424 129536.171875 0.674542896572419 -2 0.056552886962890625 3 Unmodified _EADRNPPVL_ ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8 45.69961567697781 0.039180348357221985 2 ASN{I|L} 4 6 28.008 0 0 2.7744 0 0 606.3145619123062 0 606.3145619123062 0 10.295496476836767 0 0 0 0 0 0.9247425010840047 0 ASN{I|L} 2.7744 - 246 NaN NaN 141289.4 NaN 4194 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6428 37.543 NaN 72979 35 0 13382 0.261 -1 FCQYLQWCL 9 35 439.86296709776445 1316.5670718934934 3 440.1971130371094 MULTI HCD FTMS 0 0 0 6424 6955.9052734375 0.28836715745330743 -6 0.18260955810546875 4 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))QYLQWC(Carbamidomethyl (C))L_ ENST00000572976.5_1_17:79872158-79873644:-|nuORF;ENST00000574992.5_1_17:79873485-79873644:-|nuORF 1.0714618166137932 0.3428945748894048 2 {I|L} 1 -1 18.099 0 0 1.3747 0 0 1185.4724959431012 0 1185.4724959431012 0 18.098943791441968 0 0 0 0.5 0 0 0 {I|L} 1.3747 + + 2 + NaN NaN 100203.3 NaN 4195 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6429 37.547 NaN 52194 35 0 8946.2 0.261 + 35065 YTRLCWDQFQ 10 22 453.8762067733931 1358.6067909203794 3 453.8764343261719 MULTI HCD FTMS 0 0 0 6424 8016.806640625 0.35647085081844204 -6 0.18260955810546875 5 Unmodified _YTRLCWDQFQ_ REV__ENSG00000101746|ENST00000261592|NOL4;REV__nc|ENSG00000101746|O94818-2|NOL4 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95183.7 NaN 4196 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6430 37.55 NaN 56933 35 0 6816.3 0.261 + 27850 TDISIITDL 9 26 495.77219166091544 989.5298303886309 2 495.7718200683594 MULTI HCD FTMS 0 0 0 6424 9285.123046875 0.5231186477829769 -3 0.08975601196289062 6 Unmodified _TDISIITDL_ REV__tr|U7SZF8|U7SZF8_FUSNUDihydropteroatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00814PE=3SV=1 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101016.1 NaN 4197 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6431 37.553 NaN 44471 35 0 9518.2 0.261 + 23781 RRNILSGC 8 35 459.7509882961172 NaN 0 459.7508544921875 PEAK HCD FTMS 0 0 0 6424 7812.12451171875 0.6439882418195474 12 -0.3565673828125 7 Unmodified _RRNILSGC_ REV__ENST00000554015.5_1_14:64971609-64988262:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90044.6 NaN 4198 2231 6424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6433 37.559 NaN 129320 35 0 21333 0.326 + 16093 LPSSQREVL 9 46 514.7902988388514 1027.5660447445027 2 514.7904052734375 MULTI HCD FTMS 0 0 0 6432 51134.16015625 0.4532125273919764 3 -0.08971786499023438 1 Unmodified _LPSSQREVL_ ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF 18.373094154950223 0.20161688160436167 2 {I|L}PSS 4 5 48.889 0 0 4.7577 0 0 0 640.3465056013728 640.3465056013728 31.898962788844827 0 0 0 0 0.5 1.5228787452803376 0.4247425010840047 0 + {I|L}PSS 4.7577 + + 16 + NaN NaN 106150.6 NaN 4199 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6434 37.563 NaN 95659 35 0 8388.7 0.261 -1 MPTTERVTL 9 49 532.2760442456869 1062.5375355581737 2 532.2762451171875 MULTI HCD FTMS 0 0 0 6432 29664.958984375 0.6730537334830302 3 -0.08971786499023438 2 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 12.240655878213236 0.2545997876781172 2 T[EP] 3 -1 15.686 0 0 1.4763 0 0 717.4028797834 0 717.4028797834 0 1.2224122066494676 0 0 0 0.5 0 0.5 0 T[EP] 1.4763 - 38 NaN NaN 99463.9 NaN 4200 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6435 37.567 NaN 80741 35 0 10054 0.261 -1 EKECEDTSL 9 23 555.7344772004384 1109.4544014676767 2 555.7344360351562 MULTI HCD FTMS 0 0 0 6432 38794.5234375 0.2451615671187504 22 -0.6019783020019531 3 Carbamidomethyl (C) _EKEC(Carbamidomethyl (C))EDTSL_ ENSG00000179912|ENST00000402412|R3HDM2;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000179912|Q9Y2K5|R3HDM2;R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant 11.494710602746466 0.2610445893512368 2 TS{I|L} 3 -1 30.93 0 0 2.7878 0 0 790.2799549787125 0 790.2799549787125 0 30.929862658764264 0 0 0 0.4247425010840047 0 0.5 0 TS{I|L} 2.7878 + + 6 NaN NaN 114703.2 NaN 4201 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6436 37.57 NaN 24820 35 0 4399.7 0.261 + 16943 LYHKELPEN 9 20 571.7949142244408 1141.5752755156816 2 571.79345703125 MULTI HCD FTMS 0 0 0 6432 10875.283203125 0.6667123263313799 -2 0.059803009033203125 4 Unmodified _LYHKELPEN_ ENSG00000170917|ENST00000304430|NUDT6;nc|ENSG00000170917|P53370-2|NUDT6 1.6526216038709556 0.33848895094777925 2 [HA]K 3 7 10.458 0 0 0.91607 0 0 0 802.3770846002561 802.3770846002561 10.45757490560675 0 0 0 0 0 0 0 0 [HA]K 0.91607 - 1 + NaN NaN 83656.8 NaN 4202 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6437 37.573 NaN 41127 35 0 6366 0.261 + 31148 VTVVQRQDSV 10 27 565.8116889314576 1129.6088249297152 2 565.81103515625 MULTI HCD FTMS 0 0 0 6432 4815.52392578125 0.1017611894257273 -4 0.11628341674804688 5 Unmodified _VTVVQRQDSV_ REV__ATP2B1|p.A793T|1|0.29|ENSG00000070961|chr12:89610002-89610002|C/T|missense_variant 2.735195868890462 0.4608258780945842 2 {[TV]|[{I|L}S]}Y 3 -1 15.458 0 0 1.3684 0 0 0 763.4168184869749 763.4168184869749 14.973024840566469 0 0 0 0 0.5 0 0 0 {[TV]|[{I|L}S]}Y 1.3684 - 3 + NaN NaN 87518.6 NaN 4203 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6438 37.577 NaN 19386 35 0 3826.7 0.261 -1 SPRMESTAGIT 11 18 583.27880859375 NaN 0 583.27880859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _SPRM(Oxidation (M))ESTAGIT_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89898.4 NaN 4204 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6439 37.58 NaN 23416 35 0 3310.7 0.261 + 18608 MVVGKEKHGR 10 27 570.818326197795 1139.62209946239 2 570.8184204101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _MVVGKEKHGR_ REV__ENSG00000074657|ENST00000591808|ZNF532 1.3295316138638542 0.46826628246186464 2 E 1 -1 2.2185 0 0 0.19467 0 0 514.2819027844588 493.2727144830688 1007.5546172675276 0 0 0 0 0 0 0 0 0 E 0.19467 + + 1 + NaN NaN 87698.1 NaN 4205 2232 6432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6441 37.585 NaN 452740 35 0 89418 0.327 + 31627 VYIRGSKIRF 10 51 413.5836957806499 1237.7292579421498 3 413.583740234375 MULTI HCD FTMS 0 0 0 6440 165541.109375 0.4221804813288114 5 -0.15402984619140625 1 Unmodified _VYIRGSKIRF_ ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3 32.78568957990786 0.20801173326193015 2 VY{I|L} 3 7 50.005 0 0 4.0401 0 0 0 859.4909832205834 859.4909832205834 41.90614065464281 0 0 0 0 0.3807196863200844 2 0 0 + VY{I|L} 4.0401 + + 14 + NaN NaN 149857.2 NaN 4206 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6442 37.59 NaN 137890 35 0 8040.4 0.261 + -1 VRMKMMIQS 9 42 578.2877999432368 1154.5610469532735 2 578.7913818359375 MULTI HCD FTMS 0 0 0 6440 31613.134765625 0.4477582934979861 5 -0.15402984619140625 2 2 Oxidation (M) _VRM(Oxidation (M))KM(Oxidation (M))MIQS_ REV__ENST00000263239.6_1_2:118577272-118577365:+|nuORF 6.2057823575117 0.30397260197431997 2 C{I|L}D{M(Oxidation (M))|F} 4 -1 21.23 0 0 1.8388 0 0 130.09101076924009 543.2384127252561 673.3294234944963 0 0 0 0 0 0 0 0.3807196863200844 0 C{I|L}D{M(Oxidation (M))|F} 1.8388 - 39 + NaN NaN 107816.6 NaN 4207 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6443 37.593 NaN 125040 35 0 19172 0.261 + 25351 SEAAYKEAF 9 47 508.2398948130394 1014.4652366928789 2 508.23974609375 MULTI HCD FTMS 0 0 0 6440 9683.0625 0.2967509554252977 1 -0.0332794189453125 3 Unmodified _SEAAYKEAF_ ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 11.494710602746466 0.2610445893512368 2 E{M(Oxidation (M))|F} 2 7 19.068 0 0 1.8796 0 0 720.376108130182 0 720.376108130182 0 4.463950151760656 0 0 0 0 0 0.3494850021680094 0 E{M(Oxidation (M))|F} 1.8796 - 29 + NaN NaN 103260.8 NaN 4208 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6444 37.597 NaN 67892 35 0 12396 0.262 + 2276 DLPGPFGL 8 24 408.2185346623953 NaN 0 408.20660400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _DLPGPFGL_ REV__ENST00000356083.7_1_9:116999288-117002548:+|nuORF 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93326.1 NaN 4209 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6445 37.6 NaN 36385 35 0 8371 0.261 -1 0 22 527.1555306623482 1052.2965083914962 2 527.1558837890625 MULTI HCD FTMS 0 0 0 6440 9429.9208984375 0.42955063514179936 10 -0.3034858703613281 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82659 NaN 4210 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6446 37.603 NaN 41458 35 0 4674.6 0.261 + 34923 YSLERNTAK 9 34 541.2853847709828 1080.5562166087655 2 541.28564453125 MULTI HCD FTMS 0 0 0 6440 14296.927734375 0.016613593693350578 24 -0.6750144958496094 6 Unmodified _YSLERNTAK_ REV__ENSG00000036828|ENST00000639785|CASR;REV__nc|ENSG00000036828|P41180-2|CASR 6.2057823575117 0.30397260197431997 2 {I|L}[MT] 3 -1 15.458 0 0 1.4305 0 0 717.37797743965 0 717.37797743965 0 8.467874862246562 0 0 0 0.5 0 0 0 {I|L}[MT] 1.4305 - 7 NaN NaN 88804.7 NaN 4211 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6447 37.607 NaN 38301 35 0 5281.4 0.261 + -1 VYTSTHLM 8 25 484.23183707266514 966.4491212121303 2 484.2301025390625 MULTI HCD FTMS 0 0 0 6440 11925.8017578125 0.7429904279001796 -1 0.026554107666015625 7 Oxidation (M) _VYTSTHLM(Oxidation (M))_ REV__ENST00000313349.3_1_2:64860645-64860798:-|nuORF 5.230669730166228 0.5342319408533849 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.6871 0 0 688.3173695294937 0 688.3173695294937 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.6871 + + 4 NaN NaN 88043.1 NaN 4212 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6448 37.61 NaN 21548 35 0 5633.7 0.261 + 32921 YAFRKAMSY 9 17 568.7830794408692 1135.5516059485383 2 568.7833251953125 MULTI HCD FTMS 0 0 0 6440 6364.275390625 0.6243115061528569 1 -0.0332794189453125 8 Unmodified _YAFRKAMSY_ REV__ENSG00000182950|ENST00000332145|ODF3L1 4.3292370932331545 0.3181982124262546 2 Y 1 -1 21.99 0 0 1.9365 0 0 954.4779192803727 0 954.4779192803727 0 21.989700043360187 0 0 0 0.5 0 0 0 Y 1.9365 + + 5 + NaN NaN 84465.7 NaN 4213 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6449 37.613 NaN 31518 35 0 8866.8 0.261 + 33863 YLLLHSLKE 9 22 558.3248724351747 NaN 0 558.3246459960938 PEAK HCD FTMS 0 0 0 6440 5905.19970703125 0.7267841574940621 -4 0.1096343994140625 9 Unmodified _YLLLHSLKE_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95551.5 NaN 4214 2233 6440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6451 37.618 NaN 254480 35 0 41006 0.327 + 25996 SPDSGVYEM 9 45 500.70008405455576 999.3856151759115 2 500.7001037597656 MULTI HCD FTMS 0 0 0 6450 87208.5390625 0.5704103950712898 10 -0.29674530029296875 1 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 64.23631603340823 0.01165516075559909 2 SSRYE{M(Oxidation (M))|F} 6 4 55.508 0 0 5.5542 0 0 212.0789509503922 0 212.0789509503922 0 36.555781609639766 0 0 0 1.5 0 1.1747425010840047 0 SSRYE{M(Oxidation (M))|F} 5.5542 - 149 NaN NaN 119353.9 NaN 4215 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6452 37.623 NaN 222970 35 0 20997 0.261 + 17874 MIHEPEPHI 9 53 551.7711601845837 1101.5277674359672 2 551.7713012695312 MULTI HCD FTMS 0 0 0 6450 96981.5546875 0.9047657850106401 3 -0.08640289306640625 2 Unmodified _MIHEPEPHI_ CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENSG00000123975|ENST00000314355|CKS2;ENSG00000173207|ENST00000308987|CKS1B;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF 48.345845343767074 0.03388484103555672 2 {I|L}MHE[EP]PH{I|L} 9 2 + 70.084 0 0 6.3624 6.3624 93.758 0 0 0 47.644002796251996 9.009461452434238 9.009461452434238 51.98970004336019 0 1.8494850021680094 1.3010299956639813 0.9247425010840047 0 {I|L}MHE[EP]PH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE[{I|L}P]MH{I|L};{[YC]|[HE]}PE[{I|L}P]MH{I|L};{[MS]|[{M(Oxidation (M))|F}A]}MQVEQH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]VQ[DC]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]VQM{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}MQVE[AG]H{I|L};{[MS]|[{M(Oxidation (M))|F}A]}M[AG]VEQH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]V[AG]M{[CP]|[EA]} 6.3624;1.6427;1.6315;1.5388;1.1979;0.92463;0.70287;0.70287;0.088679 -;-;-;-;-;-;-;-;- 182 + NaN NaN 128849.3 NaN 4216 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6453 37.626 NaN 141160 35 0 28298 0.261 + 16202 LPVQPEEGDG 10 25 520.7489341996633 1039.4833154661264 2 522.2755126953125 MULTI HCD FTMS 0 0 0 6450 2970.130859375 0.1727205663963673 4 -0.12075042724609375 3 Unmodified _LPVQPEEGDG_ ENST00000604105.1_1_15:21135288-21138168:-|nuORF 3.944395688203298 0.4544253912184634 2 P 1 9 6.9897 0 0 0.67242 0 0 110.03205419734645 829.3767512106222 939.4088054079687 0 0 0 0 0 0 0 0 0 + P 0.67242 + + 3 + NaN NaN 115525.8 NaN 4217 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6454 37.63 NaN 56986 35 0 4145.2 0.261 + 26126 SPLSSSTAPL 10 36 480.2558257644321 958.4970985956642 2 480.25592041015625 MULTI HCD FTMS 0 0 0 6450 31183.916015625 0.06098579109159206 12 -0.3566017150878906 4 Unmodified _SPLSSSTAPL_ REV__ENSG00000277258|ENST00000620225|PCGF2 8.745405648335112 0.42901288225909884 2 [PS]{I|L} 3 -1 19.705 0 0 2.0558 0 0 0 658.3077071679671 658.3077071679671 9.247425010840049 0 0 0 0 0.9247425010840047 0 0 0 [PS]{I|L} 2.0558 + + 13 + NaN NaN 103219 NaN 4218 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6455 37.633 NaN 68806 35 0 14164 0.261 + -1 IFVRLKMCFS 10 31 439.56679082581974 1315.6785430776592 3 439.5669250488281 MULTI HCD FTMS 0 0 0 6450 14607.4189453125 0.6245185323552687 -5 0.142913818359375 5 Carbamidomethyl (C),Oxidation (M) _IFVRLKM(Oxidation (M))C(Carbamidomethyl (C))FS_ REV__ENST00000391411.9_1_17:21438274-21438556:-|nuORF 0.776531954647913 0.4711933975711956 2 Q 1 -1 6.9897 0 0 0.53126 0 0 130.20662573938836 1054.3899289736983 1184.5965547130866 0 0 0 0 0 0 0 0 0 Q 0.53126 - 1 + NaN NaN 94804 NaN 4219 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6456 37.636 NaN 90316 35 0 7234 0.261 + 30989 VSDIMQQAQ 9 32 510.24482424905017 1018.4750955649004 2 510.2440185546875 MULTI HCD FTMS 0 0 0 6450 26652.45703125 0.596695007591366 -4 0.11963653564453125 6 Unmodified _VSDIMQQAQ_ ENSG00000108599|ENST00000225737|AKAP10 10.073929032068715 0.27331982688540024 2 [VS]D 3 6 38.952 0 0 3.8246 0 0 0 714.3248143080549 714.3248143080549 22.512262311882765 0 0 0 0 0.8494850021680094 2 0 0 + [VS]D 3.8246 + + 21 + NaN NaN 94806.3 NaN 4220 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6457 37.64 NaN 29089 35 0 6995.5 0.261 + 3489 EGVQKQYYK 9 23 571.7949142244408 1141.5752755156816 2 571.794921875 MULTI HCD FTMS 0 0 0 6450 16311.8076171875 1 0 0 7 Unmodified _EGVQKQYYK_ REV__ENSG00000151466|ENST00000281142|SCLT1;REV__nc|ENSG00000151466|Q96NL6-2|SCLT1;REV__nc|ENSG00000151466|Q96NL6-3|SCLT1;REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant 6.2057823575117 0.30397260197431997 2 Q 1 -1 9.6041 0 0 0.8413 0 0 728.3833942674379 282.10993372135005 1010.493327988788 0 0 0 0 0 0.5 0 0 0 Q 0.8413 + + 1 + NaN NaN 85495.2 NaN 4221 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6458 37.643 NaN 29553 35 0 4105.9 0.261 + 32922 YAFRKAMSY 9 22 568.7830794408692 1135.5516059485383 2 568.7831420898438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YAFRKAMSY_ REV__ENSG00000182950|ENST00000332145|ODF3L1 4.3292370932331545 0.3181982124262546 2 Y 1 -1 21.99 0 0 1.9365 0 0 954.477736174904 0 954.477736174904 0 21.989700043360187 0 0 0 0.5 0 0 0 Y 1.9365 + + 7 + NaN NaN 96664.6 NaN 4222 2234 6450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6460 37.648 NaN 106020 35 0 16828 0.327 + -1 EANMVTIFM 9 41 544.2436021279661 NaN 0 544.2620239257812 PEAK HCD FTMS 0 0 0 6459 2336.9716796875 0.9053941318437766 1 -0.026607513427734375 1 2 Oxidation (M) _EANM(Oxidation (M))VTIFM(Oxidation (M))_ REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1 14.838274106304384 0.2220448417561729 2 N 1 -1 9.6041 0 0 0.88397 0 0 790.3613975158947 179.04647241763908 969.4078699335338 0 0 0 0 0 0.5 0 0 0 N 0.88397 + + 7 + NaN NaN 111765.2 NaN 4223 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6461 37.653 NaN 89544 35 0 10653 0.261 + 26007 SPEEGAVRL 9 31 479.2535020604476 956.4924511876952 2 479.25347900390625 MULTI HCD FTMS 0 0 0 6459 57896.4765625 0.9385926105397729 1 -0.026607513427734375 2 Unmodified _SPEEGAVRL_ ENSG00000126464|ENST00000418929|PRR12 51.41523569358685 0.02959097413485123 2 SPEEQVR{I|L} 8 2 + 79.373 0 0 8.2984 8.2984 91.339 0 0 0 8.450528104279016 8.450528104279016 8.450528104279016 8.450528104279016 0 2.6989700043360187 0 0.4247425010840047 0 SPEEQVR{I|L};[PS]EEQVR{I|L};SPEE[AG]VR{I|L};[PS]EE[AG]VR{I|L} 8.2984;7.4149;7.33;6.4465 -;-;+;+ + 77 + NaN NaN 96444.5 NaN 4224 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6462 37.656 NaN 147710 35 0 27393 0.261 -1 SSGPVDPMM 9 33 476.6913975991144 951.3682422650288 2 476.69110107421875 MULTI HCD FTMS 0 0 0 6459 49160.171875 0.9223216348884152 -5 0.1495208740234375 3 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 W 1 -1 15.485 0 0 1.6276 0 0 747.2793883605351 0 747.2793883605351 0 0.7525749891599531 0 0 0 0 0 0 0 W 1.6276 - 7 + NaN NaN 103419.3 NaN 4225 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6463 37.66 NaN 55428 35 0 6323.4 0.261 + 27900 TEEDLDLVTL 10 22 574.2907273567691 1146.5669017803382 2 574.2908935546875 MULTI HCD FTMS 0 0 0 6459 34528.31640625 0.008413367308356297 83 -2.1586990356445312 4 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 2 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3568084714442 0 815.3568084714442 0 11.73393743112328 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 9 NaN NaN 83863.8 NaN 4226 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6464 37.663 NaN 54006 35 0 7467.1 0.261 -1 HPTMTILQAPT 11 28 613.3159231034261 1224.6172932736522 2 613.31591796875 MULTI HCD FTMS 0 0 0 6459 21833.89453125 0.16176726464220448 -11 0.3220481872558594 5 Oxidation (M) _HPTM(Oxidation (M))TILQAPT_ ENSG00000137331|ENST00000259874|IER3 2.498486711656943 0.4079631525365919 2 {M(Oxidation (M))|F} 1 -1 1.5938 0 0 0.13015 0 0 703.8382538222835 370.68525110416255 1074.523504926446 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.13015 + + 2 + NaN NaN 91136.4 NaN 4227 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6465 37.666 NaN 78941 35 0 13492 0.263 -1 0 21 489.0551680746907 2440.2394580404534 5 489.2557067871094 MULTI HCD FTMS 0 0 0 6459 19439.86328125 1 0 0 6 NaN NaN 2 V 1 -1 6.9897 0 0 0.28644 0 0 1594.8372715428413 743.3109224908811 2338.1481940337226 0 0 0 0 0 0 0 0 0 V 0.28644 - 6 + NaN NaN 111094 NaN 4228 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6466 37.67 NaN 101310 35 0 10325 0.261 + 29215 TYLEAHRIVKM 11 41 454.25143897785557 1359.7324875337667 3 454.251220703125 MULTI HCD FTMS 0 0 0 6459 11421.4775390625 0.7653047963823171 1 -0.026607513427734375 7 Unmodified _TYLEAHRIVKM_ ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7 1.214830529360525 0.41359283248740725 2 A{M(Oxidation (M))|F} 2 9 17.959 0 0 1.3208 0 0 1123.616549278687 0 1123.616549278687 0 14.463950151760656 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.3208 - 7 + NaN NaN 111988.3 NaN 4229 2235 6459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6468 37.675 NaN 358870 35 0 42112 0.327 + 1562 AYVHMVTHF 9 59 560.7657330135318 1119.5169130938634 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6467 162208.21875 0.14405335454356738 28 -0.7675590515136719 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 97.07464715276575 0.004340583992084827 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 99.435 0 0 8.8819 8.8819 95.009 0 0 0 13.098943791441968 16.478174818886373 13.098943791441968 13.098943791441968 0 2.9247425010840047 2 0.7614393726401688 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[C(Carbamidomethyl (C))Q][VP]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};[NP][YK]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 8.8819;7.7119;4.9786;4.3711;3.7617;1.4829 +;-;-;-;-;- + 511 NaN NaN 139117.2 NaN 4230 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6469 37.679 NaN 117860 35 0 16537 0.261 + -1 DGPGAPILEM 10 42 508.2398948130394 1014.4652366928789 2 508.2561340332031 MULTI HCD FTMS 0 0 0 6467 6774.1142578125 0.20760217938962916 4 -0.12738418579101562 2 Oxidation (M) _DGPGAPILEM(Oxidation (M))_ REV__ENST00000396908.8_2_19:36255765-36256006:+|nuORF 3.5964929083625545 0.45626689593999237 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4396 0 0 849.4200229251039 0 849.4200229251039 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4396 + + 8 + NaN NaN 95538.1 NaN 4231 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6470 37.683 NaN 112930 35 0 15719 0.261 + 27763 TATLHEPIM 9 54 514.7575056445297 1027.5004583558593 2 514.7578735351562 MULTI HCD FTMS 0 0 0 6467 44328.34765625 0.5463765852328266 -2 0.056491851806640625 3 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 48.345845343767074 0.03388484103555672 2 [TA]T{I|L}{[YC]|[HE]}P{I|L}{M(Oxidation (M))|F} 9 0 + 50.824 0 0 4.9464 4.9464 91.458 0 0 0 46.22031878693626 16.478174818886373 16.478174818886373 50.824412556698135 0 1.274227503252014 1 0 0 + + [TA]T{I|L}{[YC]|[HE]}P{I|L}{M(Oxidation (M))|F} 4.9464 + + 53 + NaN NaN 104184.5 NaN 4232 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6471 37.686 NaN 87080 35 0 13685 0.261 + 9390 HPTDVDYRVM 10 22 616.7902358142694 1231.5659186953387 2 616.79052734375 MULTI HCD FTMS 0 0 0 6467 37895.54296875 0.7986499956532734 -3 0.08977127075195312 4 Unmodified _HPTDVDYRVM_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 23.789781309258295 0.28859042913526417 2 HPTD 4 6 38.928 0 0 3.1608 0 0 0 778.3560885065061 778.3560885065061 38.92790030352131 0 0 0 0 0.5 0 0.5 0 + HPTD 3.1608 + + 7 + NaN NaN 93214.7 NaN 4233 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6472 37.69 NaN 47502 35 0 13172 0.261 -1 RYLEKPMEI 9 25 597.8131717482389 1193.6117905632777 2 597.8131713867188 MULTI HCD FTMS 0 0 0 6467 26580.609375 0.06283442537803692 75 -1.9502220153808594 5 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 K 1 -1 10.485 0 0 0.87839 0 0 504.2244747447215 558.2671602838499 1062.4916350285714 0 0 0 0 0 0.5 0 0 0 K 0.87839 + + 1 + NaN NaN 85033.2 NaN 4234 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6473 37.693 NaN 87922 35 0 9360 0.262 + 11614 IYTSGSTVR 9 32 492.2615985449403 982.5086441566806 2 492.26171875 MULTI HCD FTMS 0 0 0 6467 16942.015625 0.6080281076363102 1 -0.029911041259765625 6 Unmodified _IYTSGSTVR_ REV__ENSG00000170820|ENST00000406846|FSHR;REV__FSHR|p.V687L|1|0.23|ENSG00000170820|chr2:48962762-48962762|C/G|missense_variant;REV__nc|ENSG00000170820|P23945-2|FSHR;REV__nc|ENSG00000170820|P23945-3|FSHR;REV__nc|ENSG00000170820|P23945-4|FSHR 9.38312468134398 0.279288223203164 2 [WE][RH]TVR 7 -1 + 28.996 0 0 2.9513 2.9513 88.339 0 0 0 22.00659450546418 13.010299956639813 13.010299956639813 28.996294548824366 0 0 0 0 0 [WE][RH]TVR 2.9513 - 33 + NaN NaN 95715.3 NaN 4235 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6474 37.696 NaN 95427 35 0 11822 0.261 + 7520 FWVCLPHF 8 41 524.7578964511833 1047.5012399691666 2 525.2471313476562 MULTI HCD FTMS 0 0 0 6467 10595.4091796875 0.8851883724956429 -1 0.026607513427734375 7 Unmodified _FWVCLPHF_ ENSG00000040731|ENST00000264463|CDH10 6.354104778181461 0.5325651638111438 2 {M(Oxidation (M))|F} 1 7 16.99 0 0 1.6219 0 0 882.455385332251 0 882.455385332251 0 7.781512503836437 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.6219 + + 21 + NaN NaN 103343.6 NaN 4236 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6475 37.7 NaN 46871 35 0 6735.3 0.261 + 8935 HPDPFANKSL 10 31 563.2887419051027 1124.5629308770053 2 563.287841796875 MULTI HCD FTMS 0 0 0 6467 13820.6259765625 0.491320502215926 2 -0.06425857543945312 8 Unmodified _HPDPFANKSL_ ENSG00000118420|ENST00000369747|UBE3D;ENST00000237186.10_1_6:83602743-83775466:-|nuORF;ENST00000505226.1_1_6:83748090-83767722:-|nuORF 5.731851221503515 0.44496410492002586 2 [WY]{M(Oxidation (M))|F} 3 9 9.1812 0 0 0.81642 0 0 0 625.3224272971803 625.3224272971803 0.22878745280337398 0 0 0 0 0.5 0 0 0 [WY]{M(Oxidation (M))|F} 0.81642 - 13 NaN NaN 89325.8 NaN 4237 2236 6467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6477 37.705 NaN 247950 35 0 14431 0.327 + 3030 EADRNPPVL 9 50 505.7667764932549 1009.5190000533098 2 505.7669372558594 MULTI HCD FTMS 0 0 0 6476 72284.453125 0.3764119603221117 4 -0.130706787109375 1 Unmodified _EADRNPPVL_ ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8 41.8396318013385 0.056899836730939755 2 ASN{I|L} 4 6 32.269 0 0 3.1965 0 0 606.3169422834 0 606.3169422834 0 9.218268236853287 0 0 0 0.25 0 0.9247425010840047 0 ASN{I|L} 3.1965 - 89 NaN NaN 108328.4 NaN 4238 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6478 37.709 NaN 144070 35 0 13057 0.261 + 9167 HPIRVVNAL 9 48 509.8112968351443 1017.6080407370886 2 509.81158447265625 MULTI HCD FTMS 0 0 0 6476 63472.1640625 0.9266206977726372 -1 0.029911041259765625 2 Unmodified _HPIRVVNAL_ ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF 14.838274106304384 0.23215694253501695 2 HP{I|L} 3 6 26.682 0 0 2.6221 0 0 0 667.3889254205686 667.3889254205686 0.7403126772771884 0 0 0 0 0.5 0 0 0 + HP{I|L} 2.6221 + + 18 + NaN NaN 103816.2 NaN 4239 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6479 37.713 NaN 69381 35 0 4281.1 0.261 + 22802 QYLEQSSKL 9 43 548.2877008668947 1094.5608488005894 2 548.2879028320312 MULTI HCD FTMS 0 0 0 6476 47069.3828125 0.5145189878336274 -3 0.08640289306640625 3 Unmodified _QYLEQSSKL_ ENSG00000176102|ENST00000323959|CSTF3 23.789781309258295 0.1548179064208189 2 QE{I|L}C(Carbamidomethyl (C)){I|L} 5 6 46.013 0 0 4.2038 0 0 433.25300795722814 0 433.25300795722814 0 16.373409493950675 0 0 0 0 0 0.3807196863200844 0.4247425010840047 QE{I|L}C(Carbamidomethyl (C)){I|L} 4.2038 - 86 NaN NaN 96046.1 NaN 4240 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6480 37.716 NaN 74270 35 0 12336 0.262 + -1 HRMWLCFFF 9 34 453.8762067733931 1358.6067909203794 3 453.87615966796875 MULTI HCD FTMS 0 0 0 6476 22489.375 1 0 0 4 Carbamidomethyl (C),Oxidation (M) _HRM(Oxidation (M))WLC(Carbamidomethyl (C))FFF_ REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF 2.735195868890462 0.3302822318919627 2 A{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9115 0 0 1122.4912341350262 0 1122.4912341350262 0 21.787887749990347 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 1.9115 - 6 + NaN NaN 89771.9 NaN 4241 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6481 37.72 NaN 37322 35 0 6311.9 0.261 -1 LPQQDNMT 8 22 481.7160192777188 961.4174856222376 2 481.7161865234375 MULTI HCD FTMS 0 0 0 6476 8564.7578125 0.4691256248054963 1 -0.0343475341796875 5 Oxidation (M) _LPQQDNM(Oxidation (M))T_ ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 2.0597508629832335 0.5389364538378849 2 D 1 -1 3.4949 0 0 0.36351 0 0 406.1850770302438 437.1759432428344 843.3610202730782 0 0 0 0 0 0 0 0 0 D 0.36351 + + 2 + NaN NaN 86884.8 NaN 4242 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6482 37.723 NaN 65669 35 0 6712.7 0.261 + -1 RRIVVYFKM 9 31 409.9057362128441 1226.6953792387324 3 409.9056701660156 MULTI HCD FTMS 0 0 0 6476 6455.86328125 0.03236799459644595 89 -2.3104820251464844 6 Oxidation (M) _RRIVVYFKM(Oxidation (M))_ REV__ENSG00000166736|ENST00000504030|HTR3A;REV__HTR3A|p.P242R|1|0.17|ENSG00000166736|chr11:113986537-113986537|C/G|missense_variant;REV__nc|ENSG00000166736|P46098-2|HTR3A;REV__nc|ENSG00000166736|P46098-3|HTR3A;REV__nc|ENSG00000166736|P46098-4|HTR3A;REV__nc|ENSG00000166736|P46098-5|HTR3A 1.0714618166137932 0.3428945748894048 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.7312 0 0 1061.6497382248635 0 1061.6497382248635 0 15.752574989159953 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.7312 + + 3 + NaN NaN 93563.5 NaN 4243 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6483 37.731 NaN 71533 35 0 7774.9 0.261 -1 MVDDRLVTM 9 29 556.2597600780385 NaN 0 556.2601318359375 PEAK HCD FTMS 0 0 0 6476 20849.55859375 0.9111560511535776 3 -0.09747314453125 7 2 Oxidation (M) _M(Oxidation (M))VDDRLVTM(Oxidation (M))_ ENSG00000075785|ENST00000265062|RAB7A;ENST00000491681.1_1_3:128514210-128516981:+|nuORF 6.2057823575117 0.2651744870083793 2 T 1 -1 9.6041 0 0 0.86484 0 0 165.04874271291447 841.3893465438974 1006.438089256812 0 0 0 0 0 0.5 0 0 0 T 0.86484 + + 2 + NaN NaN 113453.1 NaN 4244 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6484 37.734 NaN 15377 35 0 5242.1 0.261 -1 RRLKLMFIF 9 15 620.3729858398438 NaN 0 620.3729858398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _RRLKLM(Oxidation (M))FIF_ ENST00000371477.3_1_6:44414444-44414573:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84207.5 NaN 4245 2237 6476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6486 37.739 NaN 122090 35 0 27596 0.327 + 14228 LAWCVQKC 8 42 475.73274170450554 949.4509304758111 2 475.7325134277344 MULTI HCD FTMS 0 0 0 6485 56091.98046875 0.863452573521608 -1 0.0343475341796875 1 Unmodified _LAWCVQKC_ REV__ENSG00000064419|ENST00000265388|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-1|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 2.302733041254933 0.5385759549224092 2 M{NN|[MP]|[D{I|L}]|[EV]} 3 -1 6.9627 0 0 0.73334 0 0 572.2815101650674 0 572.2815101650674 0 1.4781748188863748 0 0 0 0 0 0 0 M{NN|[MP]|[D{I|L}]|[EV]} 0.73334 - 12 + NaN NaN 100232.6 NaN 4246 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6487 37.744 NaN 110430 35 0 14047 0.261 -1 HKDIQSCTV 9 31 544.2638638444525 1086.513174755705 2 545.2701416015625 MULTI HCD FTMS 0 0 0 6485 57581.60546875 1 0 0 2 Carbamidomethyl (C) _HKDIQSC(Carbamidomethyl (C))TV_ ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;SMC4|p.V162F|1|0.17|ENSG00000113810|chr3:160402841-160402841|G/T|missense_variant 13.90604991867851 0.24021115267848145 2 [{M(Oxidation (M))|F}T]QSQ{I|L}N[H{I|L}] 9 -1 + 42.157 0 0 3.8801 3.8801 85.461 0 0 0 8.696662315049934 4.762036441594191 4.762036441594191 9.208187539523749 0 0 0 0.4247425010840047 0.3807196863200844 [{M(Oxidation (M))|F}T]QSQ{I|L}N[H{I|L}];[{M(Oxidation (M))|F}T]QS[AG]{I|L}N[H{I|L}];[{M(Oxidation (M))|F}T][AG]SQ{I|L}N[H{I|L}];[{M(Oxidation (M))|F}T]QSQ{I|L}GG[H{I|L}];[{M(Oxidation (M))|F}T][AG]S[AG]{I|L}N[H{I|L}];[{M(Oxidation (M))|F}T]QS[AG]{I|L}GG[H{I|L}];[{M(Oxidation (M))|F}T][AG]SQ{I|L}GG[H{I|L}] 3.8801;3.0326;3.0326;2.6822;2.1891;1.8387;1.8387 -;-;-;-;-;-;- 105 + NaN NaN 99817 NaN 4247 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6488 37.747 NaN 178390 35 0 14070 0.261 + 15320 LPAREATQF 9 53 516.7774224126769 1031.5402918921536 2 516.77734375 MULTI HCD FTMS 0 0 0 6485 87917.1015625 1 0 0 3 Unmodified _LPAREATQF_ ENSG00000183087|ENST00000327773|GAS6;ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.E209Gfs*15|1|0.46|ENSG00000183087|chr13:113835600-113835601|CC/-|frameshift_variant;nc|ENSG00000183087|Q14393-1|GAS6 51.41523569358685 0.02959097413485123 2 EATQ{M(Oxidation (M))|F} 5 4 45.918 0 0 4.4514 0 0 437.2761402814469 0 437.2761402814469 0 26.453650195120844 0 0 0 1.274227503252014 0 0.4247425010840047 0 + EATQ{M(Oxidation (M))|F} 4.4514 + + 45 NaN NaN 110921.6 NaN 4248 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6489 37.751 NaN 86378 35 0 18059 0.261 + 28877 TVVGENGSVLR 11 28 565.8116889314576 1129.6088249297152 2 565.812255859375 MULTI HCD FTMS 0 0 0 6485 42292.85546875 0.8937285626739255 2 -0.0631256103515625 4 Unmodified _TVVGENGSVLR_ ENSG00000149503|ENST00000394818|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF;nc|ENSG00000149503|Q9NQS7-2|INCENP 18.721224879955976 0.29396376558286563 2 {[TV]|[{I|L}S]}VGEN 6 5 53.901 0 0 4.7716 0 0 0 527.2952364557249 527.2952364557249 53.90092514408778 0 0 0 0 0.8494850021680094 2 0 0 + {[TV]|[{I|L}S]}VGEN 4.7716 + + 39 + NaN NaN 100469.4 NaN 4249 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6490 37.754 NaN 262370 35 0 41477 0.261 + 17875 MIHEPEPHI 9 64 551.7711601845837 1101.5277674359672 2 551.7549438476562 MULTI HCD FTMS 0 0 0 6485 32153.775390625 0.2999708132757359 7 -0.20923614501953125 5 Unmodified _MIHEPEPHI_ CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENSG00000123975|ENST00000314355|CKS2;ENSG00000173207|ENST00000308987|CKS1B;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF 15.847184025352803 0.2234401846867398 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AN 9 7 + 34.816 0 0 3.1607 3.1607 80.764 0 0 0 0.7701699437692824 20.607887415777533 0.7701699437692824 1.249387366082999 0 0.4247425010840047 0 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}AN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[R{M(Oxidation (M))|F}]{I|L}AN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RN]M{[TV]|[{I|L}S]} 3.1607;3.0473;2.1821;0.66284 -;-;-;- 365 NaN NaN 130969.8 NaN 4250 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6491 37.757 NaN 107470 35 0 8497.6 0.263 -1 EMEEKYYRF 9 51 437.52893683868274 1309.5649811162482 3 437.52886962890625 MULTI HCD FTMS 0 0 0 6485 32365.314453125 1 0 0 6 Oxidation (M) _EM(Oxidation (M))EEKYYRF_ ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 6.1918466704503565 0.30407824485930035 2 EEE 3 -1 14.705 0 0 1.1229 0 0 904.4435339384653 0 904.4435339384653 0 9.018637558036673 0 0 0 0 0 0.4247425010840047 0 EEE 1.1229 - 11 NaN NaN 94949.5 NaN 4251 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6492 37.761 NaN 68992 35 0 10920 0.261 + 8865 HMLYCFTQQF 10 28 439.86296709776445 1316.5670718934934 3 440.19775390625 MULTI HCD FTMS 0 0 0 6485 5891.62841796875 0.2442460144114613 1 -0.033245086669921875 7 Unmodified _HMLYCFTQQF_ REV__ENSG00000110675|ENST00000265840|ELMOD1;REV__nc|ENSG00000110675|Q8N336-2|ELMOD1;REV__nc|ENSG00000110675|Q8N336-3|ELMOD1 0.776531954647913 0.4711933975711956 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1761 0 0 1151.4879683552106 0 1151.4879683552106 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1761 + + 2 + NaN NaN 94189.8 NaN 4252 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6493 37.764 NaN 51693 35 0 6596.8 0.261 + -1 YVIMYMPLD 9 34 580.7719641575784 1159.5293753819567 2 580.772216796875 MULTI HCD FTMS 0 0 0 6485 15384.6826171875 0.052518069326945804 12 -0.338653564453125 8 Oxidation (M) _YVIM(Oxidation (M))YMPLD_ REV__tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1 7.910154910731844 0.2910521888787154 2 [YV]{I|L} 3 -1 32.447 0 0 2.7983 0 0 0 781.2903536432249 781.2903536432249 30.853481135844874 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]{I|L} 2.7983 + + 12 + NaN NaN 108525 NaN 4253 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6494 37.767 NaN 14712 35 0 2924 0.261 -1 NQRWPGFCH 9 15 601.269775390625 NaN 0 601.269775390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _NQRWPGFC(Carbamidomethyl (C))H_ ENST00000581274.1_1_18:20303550-20366766:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86201 NaN 4254 2238 6485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6496 37.772 NaN 406030 35 0 119740 0.327 + 9125 HPHAVNEIAL 10 55 550.7959685998555 1099.577384266511 2 550.7962036132812 MULTI HCD FTMS 0 0 0 6495 152083.046875 0.41354851209355503 -3 0.097503662109375 1 Unmodified _HPHAVNEIAL_ ENSG00000157827|ENST00000288670|FMNL2;ENSG00000161791|ENST00000335154|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 28.494509381512117 0.24525010509582015 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RH]QE{I|L}A{I|L} 9 3 + 43.808 0 0 3.9841 3.9841 85.592 0 0 0 6.512868334821469 22.609849771020485 6.512868334821469 9.208187539523749 0 0.8494850021680094 0 0.3494850021680094 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RH]QE{I|L}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RH][AG]E{I|L}A{I|L} 3.9841;3.1466 -;- 118 NaN NaN 149640.8 NaN 4255 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6497 37.777 NaN 153650 35 0 27020 0.261 + 25997 SPDSGVYEM 9 34 500.70008405455576 999.3856151759115 2 500.7002868652344 MULTI HCD FTMS 0 0 0 6495 56888.79296875 0.3720961183534733 15 -0.3881492614746094 2 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 64.23631603340823 0.01165516075559909 2 SRYE{M(Oxidation (M))|F} 5 5 57.167 0 0 5.7202 0 0 299.1112232892594 0 299.1112232892594 0 38.65479093331686 0 0 0 1.5 0 1.1989700043360187 0 SRYE{M(Oxidation (M))|F} 5.7202 - 32 NaN NaN 100639.8 NaN 4256 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6498 37.78 NaN 71625 35 0 4445.8 0.261 -1 0 43 419.3162578408133 418.3089813742133 1 419.31561279296875 MULTI HCD FTMS 0 0 0 6495 70173.03125 0.431752130100703 447 -11.42171859741211 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 4.0615 0 0 253.23016775292268 0 253.23016775292268 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 4.0615 - 2 + NaN NaN 97718.3 NaN 4257 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6499 37.784 NaN 163580 35 0 21412 0.261 + 4317 EVSPPVTVR 9 48 492.27966759944223 982.5447822656845 2 492.27984619140625 MULTI HCD FTMS 0 0 0 6495 59519.4921875 0.43220824661931634 -6 0.18727493286132812 4 Unmodified _EVSPPVTVR_ ENSG00000159339|ENST00000375448|PADI4 22.65808497894818 0.16459551161911185 2 {NN|[MP]|[D{I|L}]|[EV]}SPPVTVR 9 0 + 62.049 0 0 6.3152 6.3152 91.637 0 0 0 38.32100567431091 16.478174818886373 16.478174818886373 17.456903350432924 0 0.4247425010840047 1.2218487496163564 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}SPPVTVR;{NN|[MP]|[D{I|L}]|[EV]}SPPVR{[TV]|[{I|L}S]};{NN|[MP]|[D{I|L}]|[EV]}SP[RV]P{[TV]|[{I|L}S]};[{I|L}P]{[DS]|[MA]|[CV]|TT}PVTVR;[{I|L}P]{[DS]|[MA]|[CV]|TT}PVR{[TV]|[{I|L}S]} 6.3152;4.5385;3.37;2.5517;0.77502 +;-;-;-;- + 145 + NaN NaN 111625.1 NaN 4258 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6500 37.787 NaN 127400 35 0 15217 0.261 + 1944 DAGREYSL 8 33 455.7167871664918 909.4190213997837 2 455.716552734375 MULTI HCD FTMS 0 0 0 6495 74485.984375 0.3886566402431518 -4 0.12411117553710938 5 Unmodified _DAGREYSL_ ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 26.268140514670165 0.400522237374671 2 {[DA]|[EG]}{[NV]|[RG]}EYS{I|L} 8 0 + 62.172 0 0 6.8365 6.8365 94.861 0 0 0 20.189549981487076 61.202972028968716 20.189549981487076 62.17207215904928 0 1.1989700043360187 1.6989700043360187 0.3807196863200844 0 + + {[DA]|[EG]}{[NV]|[RG]}EYS{I|L} 6.8365 + + 40 NaN NaN 99064.6 NaN 4259 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6501 37.79 NaN 125600 35 0 19525 0.261 + 26442 STMKIIKEEF 10 52 409.22180456297207 1224.6435842891162 3 409.21295166015625 MULTI HCD FTMS 0 0 0 6495 17552.912109375 0.3068018164996189 21 -0.5641288757324219 6 Unmodified _STMKIIKEEF_ ENSG00000173464|ENST00000553849|RNASE11 4.11662792887243 0.45351373858798727 2 E{M(Oxidation (M))|F} 2 8 24.776 0 0 2.0231 0 0 930.5293942763781 0 930.5293942763781 0 7.786596949921218 0 0 0 0 0 0.3807196863200844 0 + E{M(Oxidation (M))|F} 2.0231 + + 18 NaN NaN 104383.5 NaN 4260 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6502 37.794 NaN 64536 35 0 8088.4 0.261 + -1 CELSSDEATV 10 20 555.7344772004384 1109.4544014676767 2 555.7352905273438 MULTI HCD FTMS 0 0 0 6495 16253.642578125 0.10271471673729518 29 -0.7860488891601562 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))ELSSDEATV_ REV__ENSG00000029534|ENST00000289734|ANK1;REV__ENST00000524227.5_1_8:41525962-41555361:-|nuORF;REV__nc|ENSG00000029534|P16157-10|ANK1;REV__nc|ENSG00000029534|P16157-12|ANK1;REV__nc|ENSG00000029534|P16157-14|ANK1;REV__nc|ENSG00000029534|P16157-16|ANK1;REV__nc|ENSG00000029534|P16157-21|ANK1;REV__nc|ENSG00000029534|P16157-5|ANK1;REV__nc|ENSG00000029534|P16157-8|ANK1;REV__nc|ENSG00000029534|P16157|ANK1 3.2813086475875832 0.45793521633868084 2 T 1 -1 5.4846 0 0 0.49435 0 0 163.98932686005793 841.3883761041624 1005.3777029642204 0 0 0 0 0 0 0 0 0 T 0.49435 + + 4 + NaN NaN 89171.1 NaN 4261 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6503 37.797 NaN 23423 35 0 4995.4 0.261 -1 FVMVITMFR 9 17 588.3012873111079 1174.5880216890157 2 588.3028564453125 MULTI HCD FTMS 0 0 0 6495 12509.716796875 0.17705377933478825 10 -0.2722892761230469 8 2 Oxidation (M) _FVM(Oxidation (M))VITM(Oxidation (M))FR_ TMEM248|p.C286R|2|0.23|ENSG00000106609|chr7:66953301-66953301|T/C|missense_variant 1.4819007175156935 0.3397831423917744 2 E 1 -1 6.9897 0 0 0.59508 0 0 252.2027200306157 790.3206881158811 1042.5234081464969 0 0 0 0 0 0 0 0 0 E 0.59508 - 2 + NaN NaN 84744.9 NaN 4262 2239 6495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6505 37.802 NaN 165120 35 0 18775 0.327 -1 HPVLKEMEVQ 10 46 613.3159231034261 1224.6172932736522 2 613.3158569335938 MULTI HCD FTMS 0 0 0 6504 106967.96875 0.7925253868133277 -6 0.18387603759765625 1 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 2 HPYT 4 -1 33.928 0 0 2.7705 0 0 0 723.3672579400999 723.3672579400999 24.463950151760656 0 0 0 0 0.5 0 0 0 HPYT 2.7705 - 26 + NaN NaN 114942.9 NaN 4263 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6506 37.807 NaN 53181 35 0 7606.2 0.261 + 27901 TEEDLDLVTL 10 29 574.2907273567691 1146.5669017803382 2 574.2904052734375 MULTI HCD FTMS 0 0 0 6504 30547.4375 0.007443363556817852 88 -2.2625808715820312 2 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 2 VT{I|L} 3 7 29.425 0 0 2.5663 0 0 815.3561348472233 0 815.3561348472233 0 9.731975075880328 0 0 0 0.4247425010840047 0 0.5 0 + VT{I|L} 2.5663 + + 10 NaN NaN 92111.3 NaN 4264 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6507 37.81 NaN 62914 35 0 6907.5 0.264 -1 VYTRHMTWI 9 40 408.20615158123456 1221.5966253439037 3 408.20660400390625 MULTI HCD FTMS 0 0 0 6504 15090.0263671875 0.1399345546722724 16 -0.4279632568359375 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 4.897010918128616 0.31389406404703984 2 {I|L} 1 -1 18.495 0 0 1.514 0 0 1090.5019883583552 0 1090.5019883583552 0 16.901056208558032 0 0 0 0.5 0 0 0 {I|L} 1.514 + + 5 + NaN NaN 112095.3 NaN 4265 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6508 37.814 NaN 61442 35 0 13435 0.261 + 8772 HIDHEIETL 9 21 553.7776464813611 1105.540740029522 2 553.7787475585938 MULTI HCD FTMS 0 0 0 6504 23263.75390625 0.7961838123988731 -1 0.029880523681640625 4 Unmodified _HIDHEIETL_ ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 14.838274106304384 0.23215694253501695 2 {I|L}ET{I|L} 4 5 41.186 0 0 3.7254 0 0 631.2731190412125 0 631.2731190412125 0 41.18562527100117 0 0 0 0.5 0 0.4247425010840047 0 + {I|L}ET{I|L} 3.7254 + + 9 NaN NaN 109551.2 NaN 4266 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6509 37.817 NaN 47734 35 0 8215.8 0.261 + 19671 NVTKEEPLM 9 31 530.7706419326336 1059.526730932067 2 530.7713012695312 MULTI HCD FTMS 0 0 0 6504 12232.44140625 0.6278409683271128 -1 0.029880523681640625 5 Unmodified _NVTKEEPLM_ ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 13.042465956692817 0.2476723265019929 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 89383.9 NaN 4267 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6510 37.82 NaN 50500 35 0 7081.4 0.261 + 23670 RQEVELPS 8 35 479.2535020604476 956.4924511876952 2 479.2525939941406 MULTI HCD FTMS 0 0 0 6504 25726.419921875 0.4170655809814001 6 -0.17272567749023438 6 Unmodified _RQEVELPS_ DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant;ENSG00000145214|ENST00000273814|DGKQ 3.944395688203298 0.5361403129012058 2 W 1 8 3.4949 0 0 0.36538 0 0 399.3186973808577 368.07001672916255 767.3887141100203 0 0 0 0 0 0 0 0 0 W 0.36538 - 1 + NaN NaN 103465.5 NaN 4268 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6511 37.824 NaN 43127 35 0 6183.1 0.261 -1 TIHSQETM 8 23 481.7160192777188 961.4174856222376 2 482.20782470703125 MULTI HCD FTMS 0 0 0 6504 2597.257568359375 0.2457877662816879 5 -0.14611053466796875 7 Oxidation (M) _TIHSQETM(Oxidation (M))_ USP33|p.K100Mfs*7|1|0.07|ENSG00000077254|chr1:77739410-77739411|-/GTAAAACA|frameshift_variant 4.75600775471527 0.5349361699807423 2 T{M(Oxidation (M))|F} 2 -1 21.198 0 0 2.2049 0 0 695.3240845986032 0 695.3240845986032 0 21.197887582883936 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.2049 + + 3 + NaN NaN 85353.6 NaN 4269 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6512 37.827 NaN 39065 35 0 5574 0.261 -1 SPMEMEDAL 9 22 527.7071112077161 1053.3996694822322 2 527.7069702148438 MULTI HCD FTMS 0 0 0 6504 11871.6787109375 0.6233763962845807 -6 0.18387603759765625 8 2 Oxidation (M) _SPM(Oxidation (M))EM(Oxidation (M))EDAL_ ENSG00000171940|ENST00000371471|ZNF217 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92958.7 NaN 4270 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6513 37.83 NaN 35012 35 0 14327 0.261 + 23705 RQPFPPSFPH 10 12 605.3125050744626 NaN 0 605.3252563476562 PEAK HCD FTMS 0 0 0 6504 3414.499755859375 0.8860485622180612 1 -0.033233642578125 9 Unmodified _RQPFPPSFPH_ REV__nc|ENSG00000063176|Q9NRA0-5|SPHK2 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86699.1 NaN 4271 2240 6504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6515 37.836 NaN 323130 35 0 32263 0.327 + 1563 AYVHMVTHF 9 73 560.7657330135318 1119.5169130938634 2 560.7656860351562 MULTI HCD FTMS 0 0 0 6514 128272.9765625 0.11391625352594238 33 -0.8863868713378906 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 104.79918948944588 0.003791450360204016 2 AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 92.375 0 0 8.2513 8.2513 90.123 0 0 0 5.76606256887672 5.76606256887672 5.76606256887672 5.76606256887672 0 2.6791746928241125 2 0 0 + + AYVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};AYV[MN]A[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]A[PA]H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHA[MN][PA]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};A[KC]TV[WE]H{M(Oxidation (M))|F};A[KC][WE]VTH{M(Oxidation (M))|F} 8.2513;7.7363;7.0243;5.056;3.8289;3.6945;3.6506;3.045;2.2902;2.2065 +;+;-;-;-;-;-;-;-;- + 441 + NaN NaN 136362.2 NaN 4272 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6516 37.84 NaN 234590 35 0 42236 0.261 + 16251 LPYVQIFY 8 53 521.7848844007264 NaN 0 521.7742309570312 PEAK HCD FTMS 0 0 0 6514 2997.281982421875 0.9753487602759512 -1 0.033233642578125 2 Unmodified _LPYVQIFY_ ENSG00000114378|ENST00000395144|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;nc|ENSG00000114378|Q12794-3|HYAL1;nc|ENSG00000114378|Q12794-5|HYAL1;nc|ENSG00000114378|Q12794-7|HYAL1 14.581692164780916 0.38795613832665576 2 EK 2 8 9.464 0 0 0.90864 0 0 131.1159785128628 650.2782686822874 781.3942471951502 0 0 0 0 0 0 0 0 0 EK 0.90864 - 18 + NaN NaN 125828.3 NaN 4273 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6517 37.844 NaN 186260 35 0 20790 0.261 + 28752 TTAVSNLVSR 10 41 524.2931455087612 1046.5717380843223 2 524.293212890625 MULTI HCD FTMS 0 0 0 6514 63778.7578125 1 0 0 3 Unmodified _TTAVSNLVSR_ ENST00000343677.3_1_6:26056391-26056457:-|nuORF 39.922945255915025 0.1460754433722493 2 {[DS]|[MA]|[CV]|TT}AVSN{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 56.732 0 0 5.4207 5.4207 86.821 0 0 0 39.74214396804989 7.269987279362624 7.269987279362624 9.164539485499255 0 2.0356668758921828 0 0 0 + + {[DS]|[MA]|[CV]|TT}AVSN{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}AVSGG{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KS]VA[PS];{[DS]|[MA]|[CV]|TT}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GG{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 5.4207;4.5451;2.523;1.6608;1.6431 +;-;-;-;- + 155 + NaN NaN 108860.8 NaN 4274 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6518 37.847 NaN 58879 35 0 7072.1 0.261 + 9391 HPTDVDYRVM 10 28 616.7902358142694 1231.5659186953387 2 616.79052734375 MULTI HCD FTMS 0 0 0 6514 18158.87890625 0.3826990570237832 2 -0.053096771240234375 4 Unmodified _HPTDVDYRVM_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 13.90604991867851 0.3810395177745597 2 M 1 9 4.6041 0 0 0.37384 0 0 652.1870867635013 445.31565271549067 1097.502739478992 0 0 0 0 0 0 0 0 0 + M 0.37384 + + 2 + NaN NaN 94913.5 NaN 4275 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6519 37.85 NaN 94169 35 0 6984.1 0.263 -1 ALPCPMLPA 9 36 485.24888717678795 968.4832214203759 2 485.24908447265625 MULTI HCD FTMS 0 0 0 6514 21500.083984375 0.8845220337370556 -2 0.06311416625976562 5 Carbamidomethyl (C) _ALPC(Carbamidomethyl (C))PMLPA_ nc|ENSG00000215790|P0CK97|SLC35E2A 5.230669730166228 0.3113646817964458 2 A{I|L}N 3 -1 23.188 0 0 2.3942 0 0 0 667.3126314752561 667.3126314752561 22.808984056553534 0 0 0 0 0 0 0 0 A{I|L}N 2.3942 - 6 + NaN NaN 104390.3 NaN 4276 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6520 37.854 NaN 30019 35 0 5986.4 0.261 + -1 QGQELQPCPF 10 18 602.2777959432261 1202.5410389532522 2 602.2777099609375 MULTI HCD FTMS 0 0 0 6514 19779.998046875 1 0 0 6 Carbamidomethyl (C) _QGQELQPC(Carbamidomethyl (C))PF_ REV__ENST00000524846.5_1_8:144644315-144645071:+|nuORF;REV__ENST00000528475.1_1_8:144644315-144644603:+|nuORF 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87052.2 NaN 4277 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6521 37.857 NaN 39772 35 0 7238.5 0.261 -1 RFLIVMMKH 9 13 595.830327620998 1189.646102308796 2 595.8306884765625 MULTI HCD FTMS 0 0 0 6514 11343.8388671875 0.8119353420467517 2 -0.053096771240234375 7 Oxidation (M) _RFLIVM(Oxidation (M))MKH_ ENST00000492022.1_1_19:58727564-58727924:+|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92885.6 NaN 4278 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6522 37.86 NaN 58568 35 0 13325 0.261 -1 RYLEKPMEI 9 26 597.8131717482389 1193.6117905632777 2 597.81298828125 MULTI HCD FTMS 0 0 0 6514 23058.068359375 0.05450742137806323 80 -2.05419921875 8 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 5.296884461304476 0.3108627248283497 2 K 1 -1 11.237 0 0 0.94144 0 0 504.2269161509715 558.2691134088499 1062.4960295598214 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.94144 + + 4 + NaN NaN 93461.2 NaN 4279 2241 6514 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6524 37.865 NaN 55744 35 0 4234.2 0.327 + 22803 QYLEQSSKL 9 31 548.2877008668947 1094.5608488005894 2 548.2879028320312 MULTI HCD FTMS 0 0 0 6523 31611.841796875 0.34555143647571873 2 -0.049755096435546875 1 Unmodified _QYLEQSSKL_ ENSG00000176102|ENST00000323959|CSTF3 10.799506525563784 0.2670509983294061 2 QE{I|L}C(Carbamidomethyl (C)){I|L} 5 6 34.425 0 0 3.1451 0 0 433.2541676251969 0 433.2541676251969 0 28.940162615404077 0 0 0 0 0 0 0.4247425010840047 QE{I|L}C(Carbamidomethyl (C)){I|L} 3.1451 - 22 NaN NaN 106349.3 NaN 4280 2242 6523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6525 37.87 NaN 64649 35 0 5307.3 0.261 + 10428 IPAPAEKTPV 10 45 511.797403287352 1021.580253641504 2 511.798095703125 MULTI HCD FTMS 0 0 0 6523 24253.814453125 0.6946901372647566 2 -0.049755096435546875 2 Unmodified _IPAPAEKTPV_ ENSG00000124575|ENST00000244534|H1-3 19.361941925380144 0.3300069447713393 2 {I|L}PA 3 7 26.198 0 0 2.5644 0 0 0 737.3835543268186 737.3835543268186 6.492887666437138 0 0 0 0 0 0 0 0 + {I|L}PA 2.5644 + + 20 + NaN NaN 94481.3 NaN 4281 2242 6523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6526 37.873 NaN 94091 35 0 9965.6 0.261 + 34996 YSVHSMVLK 9 42 532.2825039326264 1062.5504549320526 2 532.298095703125 MULTI HCD FTMS 0 0 0 6523 12803.9580078125 0.6466570826548028 -1 0.029880523681640625 3 Unmodified _YSVHSMVLK_ ENST00000415930.7_2_19:34891426-34891615:+|nuORF 17.11289562659939 0.2125047172822487 2 [YN]D 3 8 23.301 0 0 2.1929 0 0 0 667.3948817721495 667.3948817721495 3.6915778689651546 0 0 0 0 0 1.5228787452803376 0 0 [YN]D 2.1929 - 52 NaN NaN 108180.5 NaN 4282 2242 6523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6527 37.877 NaN 109710 35 0 8160.6 0.261 + 19598 NTIRADPAL 9 39 485.76947552216933 969.5243981111387 2 485.7689514160156 MULTI HCD FTMS 0 0 0 6523 29658.744140625 0.48627409526648263 -3 0.09299468994140625 4 Unmodified _NTIRADPAL_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 23.789781309258295 0.1548179064208189 2 {[CP]|[EA]}K{[QV]|[N{I|L}]|[RA]|[KV]}D[PA]{I|L} 9 3 + 33.663 0 0 3.4721 3.4721 82.746 0 0 0 5.6424927368726046 31.44402179365486 5.6424927368726046 5.5681094537576605 0 0.8807196863200843 0 0.7742275032520141 0 {[CP]|[EA]}K{[QV]|[N{I|L}]|[RA]|[KV]}D[PA]{I|L};{[CP]|[EA]}A[RK]D[PA]{I|L} 3.4721;2.8978 -;- 49 NaN NaN 97827.6 NaN 4283 2242 6523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6528 37.88 NaN 109030 35 0 9918.5 0.261 + 12585 KTPVHDSNI 9 42 505.7667764932549 1009.5190000533098 2 505.7666931152344 MULTI HCD FTMS 0 0 0 6523 13358 0.06956006096204062 9 -0.22234725952148438 5 Unmodified _KTPVHDSNI_ REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF 12.240655878213236 0.2545997876781172 2 ASN{I|L} 4 -1 36.23 0 0 3.5888 0 0 606.3196888654312 0 606.3196888654312 0 29.240247145042062 0 0 0 0 0 0.8807196863200843 0 ASN{I|L} 3.5888 - 22 NaN NaN 99851 NaN 4284 2242 6523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6529 37.883 NaN 47934 35 0 13129 0.261 -1 0 19 581.6648153964383 1741.9726167895146 3 582.0006713867188 MULTI HCD FTMS 0 0 0 6523 8717.708984375 0.3259738957502432 -4 0.12623977661132812 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90826 NaN 4285 2242 6523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6531 37.889 NaN 163320 35 0 17846 0.327 + 15316 LPAPVAESQR 10 47 534.2955682948217 1066.5765836564433 2 534.8096923828125 MULTI HCD FTMS 0 0 0 6530 15862.6953125 0.19531826798771657 -8 0.24032211303710938 1 Unmodified _LPAPVAESQR_ REV__ENST00000335565.4_2_X:144899448-144902015:+|nuORF 8.155526934196011 0.43213520406898465 2 {I|L}PNP 4 -1 31.983 0 0 2.9986 0 0 0 642.3216646783811 642.3216646783811 24.535247228595267 0 0 0 0 0.3054621874040891 0 0 0 {I|L}PNP 2.9986 - 24 + NaN NaN 114969.6 NaN 4286 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6532 37.893 NaN 146390 35 0 18011 0.261 + 27764 TATLHEPIM 9 50 514.7575056445297 1027.5004583558593 2 514.757568359375 MULTI HCD FTMS 0 0 0 6530 58747.96484375 0.7241080283347895 5 -0.1328277587890625 2 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 54.773552608820026 0.024892918755467567 2 [TA]T{I|L}{[YC]|[HE]}P{I|L}{M(Oxidation (M))|F} 9 0 + 52.725 0 0 5.1314 5.1314 91.792 0 0 0 42.548181095651856 16.478174818886373 16.478174818886373 52.72546876525617 0 1.6861818737241734 0 0 0 + + [TA]T{I|L}{[YC]|[HE]}P{I|L}{M(Oxidation (M))|F} 5.1314 + + 166 + NaN NaN 109278.2 NaN 4287 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6533 37.897 NaN 58105 35 0 5573.3 0.261 + -1 WCTTMDIHRF 10 30 442.53032539297175 1324.5691467791153 3 442.53045654296875 MULTI HCD FTMS 0 0 0 6530 29740.482421875 0.5830120801607166 -2 0.053096771240234375 3 Oxidation (M) _WCTTM(Oxidation (M))DIHRF_ REV__chr10:6838008-6840391|355|11.84|0.21|5.79|+|1|LINC00707,LINC00707|1 1.4551175022131473 0.4676015363898197 2 HR{M(Oxidation (M))|F} 3 -1 13.2 0 0 0.99654 0 0 866.3310314000122 0 866.3310314000122 0 13.19984993812689 0 0 0 0.4247425010840047 0 0 0 HR{M(Oxidation (M))|F} 0.99654 + + 5 + NaN NaN 102004 NaN 4288 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6534 37.9 NaN 177550 35 0 34917 0.261 + 23562 RPDPAGHLTL 10 36 538.7957696329264 1075.5769863326527 2 538.7959594726562 MULTI HCD FTMS 0 0 0 6530 11721.7021484375 0.5658500019045486 1 -0.026538848876953125 4 Unmodified _RPDPAGHLTL_ ENSG00000140400|ENST00000267978|MAN2C1;ENST00000562067.5_1_15:75648249-75648696:-|nuORF;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1 18.373094154950223 0.33925629317698053 2 {I|L}T{I|L} 3 7 28.94 0 0 2.6907 0 0 730.350981184318 0 730.350981184318 0 20.84121882396211 0 0 0 0 0 0.4247425010840047 0 + {I|L}T{I|L} 2.6907 + + 10 NaN NaN 107842.6 NaN 4289 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6535 37.903 NaN 31110 35 0 6859.4 0.261 + 28865 TVRLIDREE 9 19 565.8116889314576 1129.6088249297152 2 565.8118286132812 MULTI HCD FTMS 0 0 0 6530 14879.2509765625 0.31442690358832937 7 -0.18919754028320312 5 Unmodified _TVRLIDREE_ REV__ENSG00000167528|ENST00000547026|ZNF641;REV__nc|ENSG00000167528|Q96N77-2|ZNF641;REV__nc|ENSG00000167528|Q96N77-3|ZNF641;REV__nc|ENSG00000167528|Q96N77|ZNF641 3.2813086475875832 0.32614229037259 2 {[TV]|[{I|L}S]}V 3 -1 15.458 0 0 1.3684 0 0 0 827.4035738580686 827.4035738580686 15.45757490560675 0 0 0 0 0.5 0 0 0 {[TV]|[{I|L}S]}V 1.3684 - 2 + NaN NaN 92517 NaN 4290 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6536 37.907 NaN 37705 35 0 5211.1 0.261 + 9392 HPTDVDYRVM 10 27 616.7902358142694 1231.5659186953387 2 617.2913208007812 MULTI HCD FTMS 0 0 0 6530 12009.796875 0.33158515951852385 6 -0.15607833862304688 6 Unmodified _HPTDVDYRVM_ ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 9.38312468134398 0.42334543440173333 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 86701.3 NaN 4291 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6537 37.91 NaN 37852 35 0 8309.7 0.261 -1 KRCCLFGF 8 34 544.2638638444525 1086.513174755705 2 545.270751953125 MULTI HCD FTMS 0 0 0 6530 8178.9951171875 0.14204180398593275 5 -0.1328277587890625 7 2 Carbamidomethyl (C) _KRC(Carbamidomethyl (C))C(Carbamidomethyl (C))LFGF_ ENST00000399799.2_1_18:18530940-18531114:-|nuORF 2.8892196856762586 0.5377058178582064 2 {I|L} 1 -1 6.9897 0 0 0.64331 0 0 591.23505083168 379.17218958072505 970.4072404124051 0 0 0 0 0 0 0 0 0 {I|L} 0.64331 + + 4 + NaN NaN 89190.8 NaN 4292 2243 6530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6539 37.915 NaN 735770 35 0 224280 0.327 + 9126 HPHAVNEIAL 10 57 550.7959685998555 1099.577384266511 2 550.7962646484375 MULTI HCD FTMS 0 0 0 6538 325970.1875 0.8863873311157461 2 -0.059856414794921875 1 Unmodified _HPHAVNEIAL_ ENSG00000157827|ENST00000288670|FMNL2;ENSG00000161791|ENST00000335154|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 36.506200033944 0.17572556831573002 2 P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}A{I|L} 6 5 41.225 0 0 3.7492 0 0 426.21196181465 0 426.21196181465 0 20.027019256853542 0 0 0 0.805462187404089 0 0.3494850021680094 0.8494850021680094 P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}A{I|L} 3.7492 - 202 NaN NaN 195692.4 NaN 4293 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6540 37.92 NaN 449580 35 0 56586 0.261 + 22348 QPLQKEPSL 9 64 520.2926993432891 1038.570845753378 2 520.2927856445312 MULTI HCD FTMS 0 0 0 6538 193405.640625 0.9300374180072282 2 -0.059856414794921875 2 Unmodified _QPLQKEPSL_ ENSG00000163781|ENST00000260810|TOPBP1 43.77239144664712 0.04802738721622131 2 [QP]{I|L}QKEPS{I|L} 9 0 + 42.703 0 0 4.1117 4.1117 84.355 0 0 0 19.581954859771344 11.144141363238646 11.144141363238646 7.95880017344075 0 0.6747425010840047 0 0.9634679910804405 0 + + [QP]{I|L}QKEPS{I|L};[QP]{I|L}QA[VS]PS{I|L};[QP]{I|L}[AG]KEPS{I|L};[QP]{I|L}[AG]A[VS]PS{I|L};[PS]{I|L}T[VG]Q[QP]{I|L} 4.1117;3.3454;3.2251;2.463;1.6626 +;-;-;-;- + 270 + NaN NaN 150416.8 NaN 4294 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6541 37.923 NaN 74930 35 0 18050 0.261 + 14464 LEVFDGRD 8 32 475.73274170450554 949.4509304758111 2 475.732421875 MULTI HCD FTMS 0 0 0 6538 42252.26953125 0.6504108173576039 5 -0.12953948974609375 3 Unmodified _LEVFDGRD_ ENSG00000168487|ENST00000306385|BMP1;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520626.5_1_8:22059101-22069238:+|nuORF;ENST00000520970.5_1_8:22058712-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF 2.577480529830294 0.5381683276125971 2 M{NN|[MP]|[D{I|L}]|[EV]} 3 6 8.9524 0 0 0.94291 0 0 572.2816932705362 0 572.2816932705362 0 8.952424927286843 0 0 0 0 0 0 0 M{NN|[MP]|[D{I|L}]|[EV]} 0.94291 - 6 + NaN NaN 95173.5 NaN 4295 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6542 37.927 NaN 145040 35 0 18937 0.261 + 25998 SPDSGVYEM 9 46 500.70008405455576 999.3856151759115 2 500.6999816894531 MULTI HCD FTMS 0 0 0 6538 46358.8515625 0.30322226606577496 20 -0.5273056030273438 4 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 48.345845343767074 0.03388484103555672 2 YE{M(Oxidation (M))|F} 3 6 42.92 0 0 4.2946 0 0 542.2337441418001 0 542.2337441418001 0 32.70303756120384 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + YE{M(Oxidation (M))|F} 4.2946 + + 26 + NaN NaN 110944 NaN 4296 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6543 37.93 NaN 74220 35 0 11213 0.261 -1 NLPQHPDVEM 10 28 598.27379777614 1194.5330426190799 2 598.2741088867188 MULTI HCD FTMS 0 0 0 6538 22788.193359375 0.39396724274473954 -7 0.2103424072265625 5 Oxidation (M) _NLPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 7.608950283845883 0.4350283211712914 2 E{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.7554 0 0 900.4389515607437 0 900.4389515607437 0 13.979400086720375 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.7554 + + 7 NaN NaN 105087.3 NaN 4297 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6544 37.933 NaN 55579 35 0 5447.5 0.264 + 10009 IERLQLEDVCV 11 39 439.56679082581974 1315.6785430776592 3 439.5665588378906 MULTI HCD FTMS 0 0 0 6538 11457.4970703125 0.48984829432255844 5 -0.12953948974609375 6 Unmodified _IERLQLEDVCV_ ENSG00000198570|ENST00000680073|RD3 0.5059551277355931 0.4167017191902429 2 [KG]P 3 11 7.4473 0 0 0.56604 0 0 0 1030.4885460896312 1030.4885460896312 4.9730248405664685 0 0 0 0 0 0 0 0 [KG]P 0.56604 - 9 NaN NaN 104748.6 NaN 4298 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6545 37.937 NaN 34599 35 0 4456 0.261 + 19486 NPYSRETEF 9 25 571.7592398638985 1141.503926794597 2 571.7595825195312 MULTI HCD FTMS 0 0 0 6538 17602.5234375 0.6507431041567521 -1 0.026538848876953125 7 Unmodified _NPYSRETEF_ ENSG00000135473|ENST00000440411|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant 2.9952420565917617 0.3283108881486655 2 S 1 8 6.9897 0 0 0.61232 0 0 374.15664439007816 677.2888887994749 1051.445533189553 0 0 0 0 0 0 0 0 0 + S 0.61232 + + 2 + NaN NaN 83648.4 NaN 4299 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6546 37.94 NaN 100320 35 0 9705.2 0.261 + 2454 DQGERPPLV 9 37 505.7667764932549 1009.5190000533098 2 505.7662658691406 MULTI HCD FTMS 0 0 0 6538 17129.029296875 0.08919720932109634 11 -0.27862548828125 8 Unmodified _DQGERPPLV_ ENSG00000167077|ENST00000401548|MEI1;MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1 6.723162845929126 0.3000504726104499 2 S{[QV]|[N{I|L}]|[RA]|[KV]} 3 7 12.447 0 0 1.233 0 0 677.3544178693375 0 677.3544178693375 0 4.788559305164172 0 0 0 0 0 0.5 0 S{[QV]|[N{I|L}]|[RA]|[KV]} 1.233 - 7 NaN NaN 96147.3 NaN 4300 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6547 37.943 NaN 47794 35 0 7112.4 0.261 -1 LPQQDNMT 8 30 481.7160192777188 961.4174856222376 2 481.7164306640625 MULTI HCD FTMS 0 0 0 6538 8168.39697265625 0.4474153755829494 8 -0.19234085083007812 9 Oxidation (M) _LPQQDNM(Oxidation (M))T_ ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 2.0597508629832335 0.5389364538378849 2 R 1 -1 2.7642 0 0 0.28751 0 0 339.7926209755563 462.5003756158813 802.2929965914376 0 0 0 0 0 0 0 0 0 R 0.28751 - 2 + NaN NaN 94363.7 NaN 4301 2244 6538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6549 37.948 NaN 180160 35 0 21535 0.327 + 1945 DAGREYSL 8 43 455.7167871664918 909.4190213997837 2 455.716796875 MULTI HCD FTMS 0 0 0 6548 135767.828125 0.7084160647795988 2 -0.053150177001953125 1 Unmodified _DAGREYSL_ ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 62.57269311338072 0.04993395348098847 2 {[DA]|[EG]}{[NV]|[RG]}EYS{I|L} 8 0 + 75.227 0 0 8.272 8.272 97.583 0 0 0 20.189549981487076 59.61880661731264 20.189549981487076 75.22669403309017 0 1.6989700043360187 1.6989700043360187 1.1861818737241734 0 + + {[DA]|[EG]}{[NV]|[RG]}EYS{I|L} 8.272 + + 71 NaN NaN 107903.8 NaN 4302 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6550 37.953 NaN 219760 35 0 27439 0.261 -1 RQEYLKLEM 9 48 613.3159231034261 1224.6172932736522 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6548 125138.3671875 0.9271498189542061 -1 0.03324127197265625 2 Oxidation (M) _RQEYLKLEM(Oxidation (M))_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 14.838274106304384 0.23215694253501695 2 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 36.414 0 0 2.9735 0 0 542.2966175763687 0 542.2966175763687 0 5.216525140920609 0 0 0 0 0 0.9247425010840047 0 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9735 - 45 NaN NaN 115565.6 NaN 4303 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6551 37.956 NaN 279100 35 0 42256 0.263 + 4318 EVSPPVTVR 9 46 492.27966759944223 982.5447822656845 2 492.27972412109375 MULTI HCD FTMS 0 0 0 6548 137710.21875 1 0 0 3 Unmodified _EVSPPVTVR_ ENSG00000159339|ENST00000375448|PADI4 36.506200033944 0.08138327636155518 2 {NN|[MP]|[D{I|L}]|[EV]}SP[VP]TVR 9 0 + 63.478 0 0 6.4606 6.4606 93.723 0 0 0 48.26151861349551 16.478174818886373 16.478174818886373 45.11561899423569 0 0.7614393726401688 1.6989700043360187 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}SP[VP]TVR;[{I|L}P]{[DS]|[MA]|[CV]|TT}[VP]TVR 6.4606;1.8689 +;- + 103 + NaN NaN 122808.1 NaN 4304 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6552 37.96 NaN 141820 35 0 24245 0.261 -1 FSTLIMWRR 9 49 409.22180456297207 1224.6435842891162 3 409.2131652832031 MULTI HCD FTMS 0 0 0 6548 10209.208984375 0.178443544974943 27 -0.723907470703125 4 Oxidation (M) _FSTLIM(Oxidation (M))WRR_ ENSG00000178021|ENST00000317802|TSPYL6 4.897010918128616 0.31389406404703984 2 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.0591 0 0 930.526197973794 0 930.526197973794 0 8.226825097560422 0 0 0 0 0 0.4247425010840047 0 E{M(Oxidation (M))|F} 2.0591 - 47 NaN NaN 110215.2 NaN 4305 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6553 37.963 NaN 52095 35 0 6753.8 0.261 + 27902 TEEDLDLVTL 10 25 574.2907273567691 1146.5669017803382 2 574.29052734375 MULTI HCD FTMS 0 0 0 6548 23796.775390625 0.005798458568328621 93 -2.3875808715820312 5 Unmodified _TEEDLDLVTL_ ENSG00000182156|ENST00000328313|ENPP7 13.90604991867851 0.3810395177745597 2 VT{I|L} 3 7 33.188 0 0 2.8945 0 0 815.3547364292942 0 815.3547364292942 0 26.197887582883936 0 0 0 0.5 0 0.5 0 + VT{I|L} 2.8945 + + 6 NaN NaN 88123.5 NaN 4306 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6554 37.966 NaN 29321 35 0 5922.3 0.261 -1 VYNENLVHM 9 26 567.766018753459 1133.5174845737179 2 567.7664184570312 MULTI HCD FTMS 0 0 0 6548 12568.65625 0.6420569602319213 -2 0.059780120849609375 6 Oxidation (M) _VYNENLVHM(Oxidation (M))_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 15.847184025352803 0.2234401846867398 2 [YV]GG 4 -1 40.005 0 0 3.5293 0 0 0 754.3204439752561 754.3204439752561 29.547509540478032 0 0 0 0 0.3807196863200844 2 0 0 [YV]GG 3.5293 - 9 + NaN NaN 86880.8 NaN 4307 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6555 37.97 NaN 58784 35 0 6942.4 0.261 + -1 CRFPRQMT 8 28 556.2597600780385 NaN 0 556.2594604492188 PEAK HCD FTMS 0 0 0 6548 10141.3271484375 0.4431907542060303 11 -0.28185272216796875 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RFPRQM(Oxidation (M))T_ REV__ENSG00000114698|ENST00000354952|PLSCR4;REV__PLSCR4|p.G268Afs*31|1|0.49|ENSG00000114698|chr3:146195266-146195266|C/-|frameshift_variant 2.302733041254933 0.38822285293237185 2 T 1 -1 5.4846 0 0 0.49388 0 0 219.18387454885197 787.2586763971311 1006.4425509459832 0 0 0 0 0 0 0 0 0 T 0.49388 + + 1 + NaN NaN 90537.2 NaN 4308 2245 6548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6557 37.975 NaN 275480 35 0 32157 0.327 + 1564 AYVHMVTHF 9 55 560.7657330135318 1119.5169130938634 2 560.7656860351562 MULTI HCD FTMS 0 0 0 6556 128086.203125 0.11375038437073653 38 -0.9918365478515625 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 97.07464715276575 0.004340583992084827 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 95.104 0 0 8.4951 8.4951 90.664 0 0 0 6.197887582883936 16.478174818886373 6.197887582883936 6.197887582883936 0 3 1.6989700043360187 0.7302046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[VS]{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};[NP][YK]{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 8.4951;7.9415;4.8355;3.2912;1.2812 +;-;-;-;- + 461 NaN NaN 130843.5 NaN 4309 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6558 37.979 NaN 245950 35 0 25662 0.261 + -1 IFMKGTPHI 9 43 530.2863661765339 1058.5581794198677 2 530.2861938476562 MULTI HCD FTMS 0 0 0 6556 117793.515625 0.7345577220597512 -10 0.30010986328125 2 Oxidation (M) _IFM(Oxidation (M))KGTPHI_ REV__ENSG00000106399|ENST00000223129|RPA3;REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF;REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 2 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3757343596192 720.3757343596192 3.290587192642249 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 - 33 + NaN NaN 123795.1 NaN 4310 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6559 37.983 NaN 112040 35 0 20707 0.261 -1 SSGPVDPMM 9 38 476.6913975991144 951.3682422650288 2 476.6911315917969 MULTI HCD FTMS 0 0 0 6556 30898.033203125 0.5796953796501101 6 -0.13248443603515625 3 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.5485 0 0 427.207841352612 406.1104990569688 833.3183404095807 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 5 + NaN NaN 95507.7 NaN 4311 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6560 37.986 NaN 94483 35 0 14760 0.261 -1 HATFNDPVM 9 33 524.2318637691915 1046.4491746051829 2 524.232421875 MULTI HCD FTMS 0 0 0 6556 23401.265625 0.5965929596596545 7 -0.1656494140625 4 Oxidation (M) _HATFNDPVM(Oxidation (M))_ ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 13.042465956692817 0.2476723265019929 2 AV{I|L}{I|L}S[VP]{M(Oxidation (M))|F} 8 -1 33.148 0 0 3.1677 0 0 201.9734112028719 0 201.9734112028719 0 33.148350154927826 0 0 0 0.9247425010840047 0 0 0 AV{I|L}{I|L}S[VP]{M(Oxidation (M))|F} 3.1677 - 31 + NaN NaN 95681.7 NaN 4312 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6561 37.99 NaN 117960 35 0 11023 0.261 + 4346 EVVTEVVSR 9 41 509.2820760037411 1016.5495990742822 2 509.2820739746094 MULTI HCD FTMS 0 0 0 6556 40006.1484375 0.7933348732819078 -2 0.059856414794921875 5 Unmodified _EVVTEVVSR_ ENST00000395797.1_1_10:44140239-44144057:-|nuORF;ENST00000485351.1_1_10:44141510-44141681:-|nuORF 17.44264345198275 0.2096557692338702 2 {NN|[MP]|[D{I|L}]|[EV]}VTEVV{[QD]|[EN]|[WG]|[KD]|[RS]} 9 0 + 45.691 0 0 4.4948 4.4948 82.881 0 0 0 17.314309196763702 7.147642715192504 7.147642715192504 3.0102999566398125 0 0.3807196863200844 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}VTEVV{[QD]|[EN]|[WG]|[KD]|[RS]};VVETEVV{[QD]|[EN]|[WG]|[KD]|[RS]};{NN|[MP]|[D{I|L}]|[EV]}VT[DV]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};VVET[DV]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{NN|[MP]|[D{I|L}]|[EV]}V[VS]E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};VVE[VS]E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.4948;4.1986;2.1809;1.8847;1.2925;0.99635 +;-;-;-;-;- + 77 + NaN NaN 98259.8 NaN 4313 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6562 37.993 NaN 41820 35 0 5067.9 0.261 + 8773 HIDHEIETL 9 24 553.7776464813611 1105.540740029522 2 553.7783813476562 MULTI HCD FTMS 0 0 0 6556 15603.6943359375 0.5340242548110763 5 -0.11273574829101562 6 Unmodified _HIDHEIETL_ ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 7.289230182591677 0.29575926068275815 2 ET{I|L} 3 6 30.445 0 0 2.7539 0 0 744.3530750959 0 744.3530750959 0 30.445312593723983 0 0 0 0 0 0.4247425010840047 0 + ET{I|L} 2.7539 + + 9 NaN NaN 97639.9 NaN 4314 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6563 37.996 NaN 36984 35 0 8141.4 0.261 -1 0 32 541.2853847709828 1080.5562166087655 2 541.2850952148438 MULTI HCD FTMS 0 0 0 6556 9943.3564453125 0.011554572212979166 36 -0.9454994201660156 7 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.50757 0 0 520.2685101652092 444.1849764459594 964.4534866111687 0 0 0 0 0 0 0 0 0 {I|L} 0.50757 - 1 + NaN NaN 87652.8 NaN 4315 2246 6556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6565 38.002 NaN 166860 35 0 12304 0.327 + 8957 HPDVAKVSF 9 58 500.2665245395736 998.5184961459472 2 500.2664794921875 MULTI HCD FTMS 0 0 0 6564 45576.9296875 1 0 0 1 Unmodified _HPDVAKVSF_ ENSG00000143149|ENST00000354775|ALDH9A1;ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1 14.838274106304384 0.23215694253501695 2 YE{M(Oxidation (M))|F} 3 8 24.481 0 0 2.4518 0 0 541.367264311766 0 541.367264311766 0 7.486512420283233 0 0 0 0 0 0.3054621874040891 0 YE{M(Oxidation (M))|F} 2.4518 - 30 + NaN NaN 128429.8 NaN 4316 2247 6564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6566 38.006 NaN 42816 35 0 6031.2 0.261 -1 RCDSDCLW 8 26 527.7071112077161 1053.3996694822322 2 527.7072143554688 MULTI HCD FTMS 0 0 0 6564 16675.341796875 0.8756145385380544 1 -0.0198974609375 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))DSDCLW_ ENSG00000134574|ENST00000256996|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-4|DDB2;nc|ENSG00000134574|Q92466-5|DDB2 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87939.2 NaN 4317 2247 6564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6567 38.01 NaN 47190 35 0 4988.4 0.261 + -1 CRFPRQMT 8 27 556.2597600780385 NaN 0 556.2599487304688 PEAK HCD FTMS 0 0 0 6564 4908.771484375 0.21452045718891927 13 -0.3349876403808594 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RFPRQM(Oxidation (M))T_ REV__ENSG00000114698|ENST00000354952|PLSCR4;REV__PLSCR4|p.G268Afs*31|1|0.49|ENSG00000114698|chr3:146195266-146195266|C/-|frameshift_variant 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107238.6 NaN 4318 2247 6564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6568 38.013 NaN 23004 35 0 6627.6 0.261 + -1 GRWRRNWGC 9 13 624.3031477978896 1246.591742662579 2 624.30322265625 MULTI HCD FTMS 0 0 0 6564 17974.474609375 1 0 0 4 Carbamidomethyl (C) _GRWRRNWGC(Carbamidomethyl (C))_ REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF;REV__nc|ENSG00000290842|Q8IVE0|CROCCP3 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87868.3 NaN 4319 2247 6564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6569 38.016 NaN 18917 35 0 2702.1 0.261 -1 FMIEIMEMK 9 19 602.276680622027 1202.538808310854 2 602.2772827148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _FM(Oxidation (M))IEIMEM(Oxidation (M))K_ CCT6A|p.D187H|1|0.11|ENSG00000146731|chr7:56056359-56056359|G/C|missense_variant;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A 1.844237919475145 0.33703635659052655 2 E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3 -1 10.458 0 0 0.86962 0 0 780.3583851544937 0 780.3583851544937 0 10.45757490560675 0 0 0 0 0 0 0 E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 0.86962 + + 1 NaN NaN 85618.1 NaN 4320 2247 6564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6571 38.022 NaN 189970 35 0 37412 0.327 + 19609 NTVDEVYVSR 10 44 591.2934599702951 1180.57236700739 2 591.2938232421875 MULTI HCD FTMS 0 0 0 6570 109943.640625 0.5677420619795114 -2 0.0464324951171875 1 Unmodified _NTVDEVYVSR_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 103.69057924506346 5.895812811788693E-05 2 {[QS]|[NT]}VDEVYV{[QD]|[EN]|[WG]|[KD]|[RS]} 10 0 + 112.48 0 0 9.5272 9.5272 99.148 0 0 0 20.476146931408294 4.884381005764311 4.884381005764311 112.47601586693804 0 3.4247425010840047 1.6989700043360187 1.9916440611282626 1.4489700043360187 + + {[QS]|[NT]}VDEVYV{[QD]|[EN]|[WG]|[KD]|[RS]} 9.5272 + + 179 NaN NaN 116776.6 NaN 4321 2248 6570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6572 38.026 NaN 179830 35 0 16567 0.262 + 8958 HPDVAKVSF 9 58 500.2665245395736 998.5184961459472 2 500.2823791503906 MULTI HCD FTMS 0 0 0 6570 44884.80859375 0.9848142229304265 1 -0.023250579833984375 2 Unmodified _HPDVAKVSF_ ENSG00000143149|ENST00000354775|ALDH9A1;ENST00000491436.1_1_1:165638124-165649867:-|nuORF;nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1 8.745405648335112 0.2847203663274469 2 HPD 3 6 21.031 0 0 2.1062 0 0 0 646.3534639947874 646.3534639947874 1.3380312008851512 0 0 0 0 0.5 0 0 0 + HPD 2.1062 + + 34 + NaN NaN 107576.9 NaN 4322 2248 6570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6573 38.03 NaN 74287 35 0 13724 0.261 -1 TATLHEPIM 9 37 514.7575056445297 1027.5004583558593 2 514.7574462890625 MULTI HCD FTMS 0 0 0 6570 35978.12890625 0.4434545444215703 10 -0.2652549743652344 3 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 18.13498045792455 0.20367413111508956 2 P{I|L}{M(Oxidation (M))|F} 3 -1 31.198 0 0 3.0363 0 0 652.3169389240219 0 652.3169389240219 0 30.088643834802156 0 0 0 0.5 0 0 0 P{I|L}{M(Oxidation (M))|F} 3.0363 + + 18 + NaN NaN 102397.7 NaN 4323 2248 6570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6574 38.033 NaN 95291 35 0 9885 0.261 + -1 AAAPCLCEE 9 42 482.19926984295813 962.3839867527163 2 482.19891357421875 MULTI HCD FTMS 0 0 0 6570 26507.552734375 0.34579664919457537 -2 0.0464324951171875 4 Carbamidomethyl (C) _AAAPC(Carbamidomethyl (C))LCEE_ REV__ENST00000549080.1_1_12:29302213-29324360:+|nuORF 7.910154910731844 0.2910521888787154 2 AAA 3 -1 4.437 0 0 0.46104 0 0 0 746.2455538385374 746.2455538385374 0.45757490560674974 0 0 0 0 0 0 0 0 AAA 0.46104 + + 12 + NaN NaN 91661.9 NaN 4324 2248 6570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6575 38.036 NaN 61494 35 0 6502.5 0.261 -1 YVAWNIHM 8 35 525.2473454605481 1048.4801379878961 2 525.2470092773438 MULTI HCD FTMS 0 0 0 6570 12792.962890625 0.09231055019593522 38 -1.0116729736328125 5 Oxidation (M) _YVAWNIHM(Oxidation (M))_ ENST00000465010.1_1_3:182983305-182987339:+|nuORF 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4769 0 0 883.4346800794962 0 883.4346800794962 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4769 + + 11 + NaN NaN 100116.2 NaN 4325 2248 6570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6576 38.039 NaN 34659 35 0 8792.3 0.261 + 2560 DTDYKRWT 8 24 542.7573871935907 1083.5002214539813 2 542.7579956054688 MULTI HCD FTMS 0 0 0 6570 6161.8603515625 0.3685810562943571 -12 0.3465423583984375 6 Unmodified _DTDYKRWT_ REV__CALB1|p.M104K|1|0.13|ENSG00000104327|chr8:90069158-90069158|A/T|missense_variant;REV__ENSG00000104327|ENST00000265431|CALB1;REV__nc|ENSG00000104327|P05937-2|CALB1 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92086.2 NaN 4326 2248 6570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6578 38.045 NaN 255740 35 0 28780 0.327 + 18410 MPSRPELSA 9 51 494.24986658627694 986.4851802393539 2 494.25006103515625 MULTI HCD FTMS 0 0 0 6577 168195.828125 0.8860198926474279 -1 0.023250579833984375 1 Unmodified _MPSRPELSA_ ENSG00000115963|ENST00000263895|RND3 43.981846655682396 0.04706587046877104 2 MPSR 4 5 42.964 0 0 4.3552 0 0 0 512.2342562182786 512.2342562182786 7.5185720258015465 0 0 0 0 1 0 0.7302046884880937 0 + MPSR 4.3552 + + 90 + NaN NaN 112994.4 NaN 4327 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6579 38.049 NaN 234730 35 0 12512 0.261 + 21733 QADSLERSL 9 58 509.76163829723754 1017.5087236612751 2 509.7618103027344 MULTI HCD FTMS 0 0 0 6577 107619.734375 0.25736129292563337 -5 0.12953948974609375 2 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 19.361941925380144 0.1930734562688509 2 [QA]ETEVV{[QD]|[EN]|[WG]|[KD]|[RS]} 9 6 + 26.321 0 0 2.5868 2.5868 80.449 0 0 0 6.020599913279625 1.211375162600703 1.211375162600703 1.211375162600703 0 0 0 0 0 [QA]ETEVV{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]DS{[QN]|[E{I|L}]|[KN]}RS{I|L};[QA]DS{[QN]|[E{I|L}]|[KN]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[DN]VTEVV{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]DS[KQ]V{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]ET[DV]RS{I|L};[QA]ET[DV]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[DN]VT[DV]RS{I|L};[DN]VT[DV]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[QA]D[R{I|L}]{[ES]|[DT]|[{I|L}C]}S{I|L} 2.5868;2.4678;2.2736;1.9951;1.9777;1.8258;1.6316;1.2341;1.0399;0.38613 -;+;-;-;-;-;-;-;-;- + 242 + NaN NaN 113680.6 NaN 4328 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6580 38.053 NaN 84464 35 0 10346 0.261 + -1 YVIMYMPLD 9 29 580.7719641575784 1159.5293753819567 2 580.7557373046875 MULTI HCD FTMS 0 0 0 6577 4788.20361328125 0.016345297174535294 23 -0.6276092529296875 3 Oxidation (M) _YVIM(Oxidation (M))YMPLD_ REV__tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1 4.3292370932331545 0.3181982124262546 2 TEC 3 -1 20.445 0 0 1.7632 0 0 165.11145944490596 658.2953585260374 823.4068179709434 0 0 0 0 0 0 0 0.4247425010840047 0 TEC 1.7632 - 17 + NaN NaN 91318.7 NaN 4329 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6581 38.056 NaN 124600 35 0 17025 0.261 -1 QPMQPTPSM 9 45 516.7278866094207 1031.4412202856413 2 516.7279663085938 MULTI HCD FTMS 0 0 0 6577 36962.75 0.9657438016107188 1 -0.03311920166015625 4 Oxidation (M) _QPM(Oxidation (M))QPTPSM_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 18.1463463914782 0.20357593197100715 2 S 1 -1 4.6041 0 0 0.44637 0 0 132.08088200614753 809.2972506158811 941.3781326220287 0 0 0 0 0 0 0 0 0 S 0.44637 + + 7 + NaN NaN 98684.8 NaN 4330 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6582 38.059 NaN 85934 35 0 12300 0.261 + 22559 QSIGERPAL 9 42 485.76947552216933 969.5243981111387 2 485.76959228515625 MULTI HCD FTMS 0 0 0 6577 33978.30078125 0.5570959914132958 4 -0.09596633911132812 5 Unmodified _QSIGERPAL_ REV__ENSG00000137076|ENST00000314888|TLN1;REV__nc|ENSG00000137076|Q9Y490-2|TLN1 12.240655878213236 0.2545997876781172 2 {I|L}[PA] 3 -1 12.447 0 0 1.2839 0 0 670.3409901349625 0 670.3409901349625 0 5.45757490560675 0 0 0 0.5 0 0 0 {I|L}[PA] 1.2839 - 4 NaN NaN 91902.6 NaN 4331 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6583 38.063 NaN 32449 35 0 4709.8 0.261 + 34759 YQCFEWFRF 9 30 442.53032539297175 1324.5691467791153 3 442.864990234375 MULTI HCD FTMS 0 0 0 6577 14394.47265625 0.5169647549952361 3 -0.06280136108398438 6 Unmodified _YQCFEWFRF_ REV__ENST00000572976.5_1_17:79872158-79873644:-|nuORF;REV__ENST00000574992.5_1_17:79873485-79873644:-|nuORF 0.8643753074506083 0.3444644448335434 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 83091.9 NaN 4332 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6584 38.066 NaN 67234 35 0 11316 0.261 -1 EVPATEEGM 9 28 489.70731177606143 977.4000706189229 2 489.70794677734375 MULTI HCD FTMS 0 0 0 6577 7872.47607421875 0.42873347458844024 -1 0.023250579833984375 7 Oxidation (M) _EVPATEEGM(Oxidation (M))_ ENSG00000203740|ENST00000439373|NTMT2 10.823927491677226 0.26684000660059787 2 EE{[CT]|[{M(Oxidation (M))|F}G]} 4 -1 16.995 0 0 1.7388 0 0 497.24937636543126 0 497.24937636543126 0 13.015384402724592 0 0 0 0.3807196863200844 0 0 0 EE{[CT]|[{M(Oxidation (M))|F}G]} 1.7388 + + 4 NaN NaN 102581.5 NaN 4333 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6585 38.069 NaN 19890 35 0 6655.9 0.261 -1 CYRWFGKC 8 12 588.7552604832637 NaN 0 588.7552490234375 PEAK HCD FTMS 0 0 0 6577 13182.841796875 1 0 0 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRWFGKC(Carbamidomethyl (C))_ ENST00000482672.1_1_1:161127020-161127131:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83170.7 NaN 4334 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6586 38.073 NaN 24519 35 0 4057.8 0.261 + -1 LHGMIVEECE 10 19 616.7683094591216 1231.5220659850431 2 616.7674560546875 MULTI HCD FTMS 0 0 0 6577 8345.36328125 0.4839003435005619 8 -0.21545028686523438 9 Carbamidomethyl (C),Oxidation (M) _LHGM(Oxidation (M))IVEEC(Carbamidomethyl (C))E_ REV__ENSG00000188868|ENST00000293725|ZNF563;REV__nc|ENSG00000188868|Q8TA94-2|ZNF563;REV__ZNF563|p.R181Sfs*11|1|0.23|ENSG00000188868|chr19:12319474-12319484|AGGTTTCTACG/-|frameshift_variant 0.45834013312273997 0.47287763746706196 2 M 1 -1 4.6041 0 0 0.37385 0 0 652.1446988969557 445.31525598697505 1097.4599548839308 0 0 0 0 0 0 0 0 0 M 0.37385 + + 1 + NaN NaN 85103.4 NaN 4335 2249 6577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6588 38.078 NaN 200090 35 0 55672 0.327 + 17696 MAQYIQYAI 9 37 550.7772091908305 NaN 0 550.7960815429688 PEAK HCD FTMS 0 0 0 6587 5913.48876953125 0.27426005781941193 -4 0.10280227661132812 1 Unmodified _MAQYIQYAI_ REV__ENST00000450133.5_1_7:32960952-32982608:-|nuORF 7.910154910731844 0.25691533546754686 2 A{I|L} 2 -1 10.969 0 0 0.99761 0 0 131.05773689098584 781.3369234674436 912.3946603584295 0 0 0 0 0 0 0 0 0 A{I|L} 0.99761 + + 15 + NaN NaN 113151.5 NaN 4336 2250 6587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6589 38.082 NaN 109630 35 0 18811 0.261 -1 NLPQHPDVEM 10 26 598.27379777614 1194.5330426190799 2 598.2742309570312 MULTI HCD FTMS 0 0 0 6587 39423.50390625 0.6815621093057005 -1 0.03311920166015625 2 Oxidation (M) _NLPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 7.608950283845883 0.4350283211712914 2 {[QV]|[N{I|L}]|[RA]|[KV]}S 3 -1 32.76 0 0 2.7425 0 0 0 877.3739107721311 877.3739107721311 11.790521660407123 0 0 0 0 0.3807196863200844 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}S 2.7425 - 8 + NaN NaN 109387.6 NaN 4337 2250 6587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6591 38.088 NaN 141520 35 0 15370 0.327 + -1 HLGIKDGPLEM 11 38 613.3159231034261 1224.6172932736522 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6590 86353.4921875 0.6397927865539665 5 -0.1425018310546875 1 Oxidation (M) _HLGIKDGPLEM(Oxidation (M))_ REV__ENSG00000257335|ENST00000475668|MGAM;REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;REV__nc|ENSG00000257335|O43451-1|MGAM 10.150570793230772 0.3686401556411756 2 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 32.268 0 0 2.6349 0 0 542.2963124005875 0 542.2963124005875 0 1.0700062767654828 0 0 0 0 0 0.9247425010840047 0 KE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6349 - 29 NaN NaN 114446.7 NaN 4338 2251 6590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6592 38.092 NaN 99022 35 0 14027 0.264 -1 TAFILKEKME 10 37 409.22180456297207 1224.6435842891162 3 409.2131652832031 MULTI HCD FTMS 0 0 0 6590 4542.9853515625 0.07940540860146557 33 -0.8791007995605469 2 Oxidation (M) _TAFILKEKM(Oxidation (M))E_ ENST00000421243.5_2_3:195309580-195310790:-|nuORF 8.97624648632007 0.42715123575657504 2 E{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9976 0 0 930.5561647107944 0 930.5561647107944 0 8.26606256887672 0 0 0 0 0 0.5 0 E{M(Oxidation (M))|F} 1.9976 - 7 + NaN NaN 98245.7 NaN 4339 2251 6590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6593 38.096 NaN 44119 35 0 5392.7 0.261 + 3474 EGHAPAESI 9 32 455.7167871664918 909.4190213997837 2 455.7166442871094 MULTI HCD FTMS 0 0 0 6590 21007.126953125 0.10961202233239493 8 -0.2255401611328125 3 Unmodified _EGHAPAESI_ REV__ENST00000553770.1_1_14:77787419-77791288:+|nuORF 10.823927491677226 0.26684000660059787 2 S{I|L} 2 -1 24.776 0 0 2.7244 0 0 691.2914906232437 0 691.2914906232437 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 S{I|L} 2.7244 + + 3 NaN NaN 91809.5 NaN 4340 2251 6590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6594 38.099 NaN 19408 35 0 3717.8 0.261 + 318 AFSWPWWY 8 13 571.7581438623996 NaN 0 571.7604370117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AFSWPWWY_ ENSG00000167601|ENST00000301178|AXL;ENST00000599659.5_1_19:41725288-41749617:+|nuORF;nc|ENSG00000167601|P30530-2|AXL 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82091.5 NaN 4341 2251 6590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6595 38.102 NaN 33654 35 0 7622.1 0.261 + -1 SCGMSRMKL 9 29 564.2555710680659 NaN 0 564.2547607421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))SC(Carbamidomethyl (C))GM(Oxidation (M))SRMKL_ REV__ENST00000407904.7_1_7:2834695-2854521:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97023.8 NaN 4342 2251 6590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6597 38.108 NaN 282430 35 0 29289 0.327 -1 HPTGKMFIL 9 51 530.2863661765339 1058.5581794198677 2 530.2865600585938 MULTI HCD FTMS 0 0 0 6596 135212.296875 0.8431808513395562 -4 0.08605194091796875 1 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 30.636539890814138 0.10832830463492794 2 HPT 3 -1 38.333 0 0 3.6212 0 0 0 720.3755646005067 720.3755646005067 18.92011712512675 0 0 0 0 0.5 0 0.7134679910804405 0 HPT 3.6212 + + 45 + NaN NaN 143358.2 NaN 4343 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6598 38.112 NaN 220720 35 0 28201 0.261 + 1565 AYVHMVTHF 9 51 560.7657330135318 1119.5169130938634 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6596 105310.0546875 0.09352341553224107 44 -1.1535987854003906 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 86.833 0 0 7.7563 7.7563 92.356 0 0 0 9.259687322722812 16.478174818886373 9.259687322722812 9.259687322722812 0 2.6677353201839438 1.6989700043360187 0.7302046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};[HT]{[ES]|[DT]|[{I|L}C]}YVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}SY{[QG]|[NA]}[R{M(Oxidation (M))|F}]{[ES]|[DT]|[{I|L}C]} 7.7563;6.9292;3.6745;3.6273;1.4374 +;-;-;-;- + 309 NaN NaN 113461.2 NaN 4344 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6599 38.116 NaN 78923 35 0 16592 0.261 + 1696 CGIVPQLQN 9 32 486.2523792101659 NaN 0 486.261474609375 PEAK HCD FTMS 0 0 0 6596 4401.98046875 1 0 0 3 Unmodified _CGIVPQLQN_ ENSG00000182521|ENST00000247219|TBPL2 4.75600775471527 0.27219989241163056 2 V 1 8 6.9897 0 0 0.72022 0 0 117.06157825160695 751.3389681580682 868.4005464096751 0 0 0 0 0 0 0 0 0 + V 0.72022 + + 6 + NaN NaN 87716.5 NaN 4345 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6600 38.119 NaN 93175 35 0 11027 0.261 -1 DSKKIENA 8 35 473.7455294074697 945.4765058817394 2 474.2558898925781 MULTI HCD FTMS 0 0 0 6596 3659.41015625 0.7676395668589469 4 -0.12275314331054688 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DSKKIENA_ tr|U7SYY7|U7SYY7_FUSNUGTPcyclohydrolase1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=folEPE=3SV=1 2.302733041254933 0.5385759549224092 2 SE 2 -1 10.261 0 0 1.0853 0 0 157.04818519146266 569.3290499322874 726.3772351237501 0 0 0 0 0 0 0 0.3807196863200844 0 SE 1.0853 - 6 + NaN NaN 98503.5 NaN 4346 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6601 38.122 NaN 48494 35 0 6713.9 0.261 + 34813 YREIHDTTL 9 34 574.2907273567691 1146.5669017803382 2 574.291259765625 MULTI HCD FTMS 0 0 0 6596 23821.900390625 0.0058045806697115945 100 -2.592761993408203 5 Unmodified _YREIHDTTL_ REV__DDX60|p.A1007V|1|0.31|ENSG00000137628|chr4:168267601-168267601|G/A|missense_variant;REV__ENSG00000137628|ENST00000393743|DDX60 3.5964929083625545 0.32375295897743744 2 T 1 -1 6.9897 0 0 0.60962 0 0 149.10566627521786 893.3893526666624 1042.4950189418803 0 0 0 0 0 0 0 0 0 T 0.60962 + + 3 + NaN NaN 97508 NaN 4347 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6602 38.125 NaN 19058 35 0 6666.6 0.261 + -1 WETFCHRLV 9 15 624.3031477978896 1246.591742662579 2 624.3030395507812 MULTI HCD FTMS 0 0 0 6596 7534.1201171875 0.4191566252099467 5 -0.15264892578125 6 Carbamidomethyl (C) _WETFC(Carbamidomethyl (C))HRLV_ REV__ENSG00000163617|ENST00000295878|CCDC191;REV__ENST00000460813.5_1_3:113723412-113755878:-|nuORF;REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 77918.9 NaN 4348 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6603 38.129 NaN 52350 35 0 19773 0.261 + 16258 LQEHNLANYL 10 17 607.8117119483265 1213.608870963453 2 607.8120727539062 MULTI HCD FTMS 0 0 0 6596 19833.08984375 0.22130573614598478 -4 0.08605194091796875 7 Unmodified _LQEHNLANYL_ ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3 3.5870582119611467 0.4563168352879256 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86363.6 NaN 4349 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6604 38.132 NaN 31684 35 0 6121.2 0.261 -1 FMTRYMDY 8 26 571.737505329556 NaN 0 571.737548828125 PEAK HCD FTMS 0 0 0 6596 4943.1318359375 0.4137211178798195 -2 0.029682159423828125 8 Oxidation (M) _FM(Oxidation (M))TRYMDY_ GRID2|p.T537M|1|0.2|ENSG00000152208|chr4:93455726-93455726|C/T|missense_variant 7.289230182591677 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89480.4 NaN 4350 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6605 38.135 NaN 18398 35 0 2961 0.261 -1 YSFHHRKC 8 23 567.766845703125 NaN 0 567.766845703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _YSFHHRKC(Carbamidomethyl (C))_ ENSG00000185513|ENST00000418998|L3MBTL1;nc|ENSG00000185513|Q9Y468-1|L3MBTL1;nc|ENSG00000185513|Q9Y468-2|L3MBTL1;nc|ENSG00000185513|Q9Y468-3|L3MBTL1;nc|ENSG00000185513|Q9Y468-4|L3MBTL1;nc|ENSG00000185513|Q9Y468|L3MBTL1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 75184.1 NaN 4351 2252 6596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6607 38.141 NaN 215330 35 0 32416 0.327 + 21844 QAVKDYEL 8 54 483.25040215236544 964.4862513715309 2 483.2504577636719 MULTI HCD FTMS 0 0 0 6606 137161.921875 0.5644189281228909 -2 0.052913665771484375 1 Unmodified _QAVKDYEL_ ENSG00000118898|ENST00000345988|PPL 46.020951573049366 0.15358337540685318 2 [YE]DKV[QA]{I|L} 8 6 + 40.411 0 0 4.1899 4.1899 84.677 0 0 0 10 18.984484532805155 10 8.45098040014257 0 0 1.3979400086720375 0.3807196863200844 0.5 [YE]DKV[QA]{I|L};[YE]DK{I|L}{[QG]|[NA]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EKV[QA]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}{[QG]|[NA]}{I|L};[YT][Q{I|L}]E[QA]{I|L};[QA]{I|L}[QT]YE{I|L} 4.1899;3.3137;3.1531;2.2769;2.0158;1.3107 -;-;-;-;-;- 195 NaN NaN 114627.3 NaN 4352 2253 6606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6608 38.145 NaN 299080 35 0 123980 0.261 -1 0 43 405.5436591889532 1213.6091481670596 3 405.5436706542969 MULTI HCD FTMS 0 0 0 6606 77183.859375 0.40454896641053306 -3 0.06284713745117188 2 NaN NaN 2 VC(Carbamidomethyl (C))C(Carbamidomethyl (C))Y{I|L} 5 -1 31.466 0 0 2.5928 0 0 500.3335438459 0 500.3335438459 0 15.981362441963327 0 0 0 0.9247425010840047 0 0 0 VC(Carbamidomethyl (C))C(Carbamidomethyl (C))Y{I|L} 2.5928 - 12 NaN NaN 131331.1 NaN 4353 2253 6606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6609 38.149 NaN 206980 35 0 18008 0.261 + 2458 DQSPPLCQIKP 11 54 409.21302812952655 1224.6172549887797 3 410.2263488769531 MULTI HCD FTMS 0 0 0 6606 5346.85107421875 0.6971310824169695 8 -0.2223358154296875 3 Unmodified _DQSPPLCQIKP_ REV__ENSG00000026297|ENST00000508775|RNASET2;REV__ENST00000028008.9_1_6:167343078-167365992:-|nuORF 5.868138319507137 0.39318500527288264 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1925 0 0 1059.571385093075 0 1059.571385093075 0 3.300463790750017 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1925 - 22 + NaN NaN 115237 NaN 4354 2253 6606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6610 38.152 NaN 43575 35 0 6342.4 0.261 + -1 MSGGTSLPLHP 11 32 556.7714538400444 1111.5283547468887 2 556.772216796875 MULTI HCD FTMS 0 0 0 6606 14770.2412109375 0.9005872470733215 2 -0.053119659423828125 4 Oxidation (M) _M(Oxidation (M))SGGTSLPLHP_ REV__ENSG00000176542|ENST00000316407|USF3 2.735195868890462 0.4069250265843076 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 3 -1 12.447 0 0 1.1198 0 0 0 760.4031466119749 760.4031466119749 6.962724883926656 0 0 0 0 0.5 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N 1.1198 - 11 + NaN NaN 87548.6 NaN 4355 2253 6606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6611 38.155 NaN 24026 35 0 5099.9 0.261 + -1 QRCRWFVD 8 20 583.7801513671875 NaN 0 583.7801513671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _QRC(Carbamidomethyl (C))RWFVD_ REV__nc|ENSG00000170242|Q96K76|USP47 0.6903765706972694 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.60021 0 0 131.0963238699665 959.3927096002561 1090.4890334702227 0 0 0 0 0 0 0 0 0 A 0.60021 - 1 + NaN NaN 94789 NaN 4356 2253 6606 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6613 38.161 NaN 193070 35 0 32384 0.327 + 19610 NTVDEVYVSR 10 49 591.2934599702951 1180.57236700739 2 591.2935791015625 MULTI HCD FTMS 0 0 0 6612 136797.71875 0.7064148365081327 4 -0.1261444091796875 1 Unmodified _NTVDEVYVSR_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 116.74517065009209 4.286409334324374E-05 2 {[QS]|[NT]}VDEVYVSR 10 0 + 118.92 0 0 10.073 10.073 98.575 0 0 0 22.37002527416834 14.146518864155126 14.146518864155126 43.712049025977294 0 3.5 1.5228787452803376 2.1861818737241734 1.5044321917401078 + + {[QS]|[NT]}VDEVYVSR;{[QS]|[NT]}Q{[QS]|[NT]}VYVS[VG];{[QS]|[NT]}[AG]{[QS]|[NT]}VYVS[VG] 10.073;6.3701;5.5969 +;-;- + 263 NaN NaN 131374.1 NaN 4357 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6614 38.165 NaN 342580 35 0 86270 0.264 -1 0 65 425.77486986061933 849.5351867880387 2 425.7748718261719 MULTI HCD FTMS 0 0 0 6612 173886.46875 0.7446005800516275 -2 0.053058624267578125 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7191 0 0 684.4562816140137 0 684.4562816140137 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7191 - 1 + NaN NaN 138107.5 NaN 4358 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6615 38.169 NaN 183770 35 0 20767 0.261 -1 0 46 500.2665245395736 998.5184961459472 2 500.28277587890625 MULTI HCD FTMS 0 0 0 6612 16535.755859375 0.3628097805787502 7 -0.20244216918945312 3 NaN NaN 2 YE{M(Oxidation (M))|F} 3 -1 24.909 0 0 2.4946 0 0 541.3663793020004 0 541.3663793020004 0 16.49288766643714 0 0 0 0 0 0.6237125054200234 0 YE{M(Oxidation (M))|F} 2.4946 - 41 + NaN NaN 103705.7 NaN 4359 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6616 38.172 NaN 157400 35 0 35870 0.261 -1 TATLHEPIM 9 44 514.7575056445297 1027.5004583558593 2 514.7575073242188 MULTI HCD FTMS 0 0 0 6612 24764.69140625 0.3052414141356754 16 -0.4586524963378906 4 Oxidation (M) _TATLHEPIM(Oxidation (M))_ ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1 21.74664581756881 0.17247014374749275 2 PVN[QT][{I|L}P]{M(Oxidation (M))|F} 8 -1 32.089 0 0 3.123 0 0 113.02993731828924 0 113.02993731828924 0 -0.6465843963902529 -0.6465843963902529 0 0 0.7742275032520141 0 1.274227503252014 0 PVN[QT][{I|L}P]{M(Oxidation (M))|F} 3.123 - 67 + NaN NaN 115123 NaN 4360 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6617 38.175 NaN 29270 35 0 5742 0.261 + 35135 YVFHSFEAGF 10 24 602.276680622027 1202.538808310854 2 602.2775268554688 MULTI HCD FTMS 0 0 0 6612 19428.818359375 0.9740338073784501 1 -0.03322601318359375 5 Unmodified _YVFHSFEAGF_ ENST00000300101.2_1_12:57396295-57396352:-|nuORF 3.2813086475875832 0.45793521633868084 2 EQ{M(Oxidation (M))|F} 3 8 26.198 0 0 2.1785 0 0 780.3597279279312 0 780.3597279279312 0 25.484550065040278 0 0 0 0 0 0 0 EQ{M(Oxidation (M))|F} 2.1785 - 6 NaN NaN 85605.3 NaN 4361 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6618 38.179 NaN 48275 35 0 6113.1 0.261 + 20495 PCPVGHMPNL 10 30 532.7539292245648 1063.4933055159295 2 532.7544555664062 MULTI HCD FTMS 0 0 0 6612 11237.091796875 0.45546499475217755 8 -0.2289581298828125 6 Unmodified _PCPVGHMPNL_ REV__ENSG00000197081|ENST00000356956|IGF2R 6.723162845929126 0.4397169348982109 2 [C(Carbamidomethyl (C))C]S 3 -1 8.9524 0 0 0.84179 0 0 0 710.3638399713499 710.3638399713499 8.952424927286843 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))C]S 0.84179 - 1 + NaN NaN 102400.2 NaN 4362 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6619 38.182 NaN 24144 35 0 3710.7 0.261 + 13045 KYKRRRFQKT 10 20 470.9535367029774 1409.8387807091322 3 470.9537353515625 MULTI HCD FTMS 0 0 0 6612 7088.48876953125 0.296870861520325 7 -0.20244216918945312 7 Unmodified _KYKRRRFQKT_ ENSG00000104853|ENST00000337392|CLPTM1;ENST00000587537.5_1_19:45480680-45489871:+|nuORF;nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 0.6268255596534771 0.47198581731947004 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98359.2 NaN 4363 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6620 38.185 NaN 23168 35 0 6200.9 0.261 + -1 FTCPCFCQQ 9 20 624.2362322145161 NaN 0 624.236328125 PEAK HCD FTMS 0 0 0 6612 7351.05126953125 0.5317657468320898 -7 0.15900802612304688 8 3 Carbamidomethyl (C) _FTC(Carbamidomethyl (C))PC(Carbamidomethyl (C))FC(Carbamidomethyl (C))QQ_ REV__ENST00000572919.1_3_17:3512819-3513218:-|nuORF 0.5247636613948944 0.2927039108006614 2 M 1 -1 6.9897 0 0 0.56077 0 0 636.700722630401 475.7079256647094 1112.4086482951104 0 0 0 0 0 0 0 0 0 M 0.56077 - 1 + NaN NaN 80003.5 NaN 4364 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6621 38.189 NaN 17659 35 0 2806.9 0.261 + 1829 CSLLHEGIIW 10 19 585.8029174804688 NaN 0 585.8029174804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _CSLLHEGIIW_ REV__ENST00000327492.3_1_22:41830740-41830857:-|nuORF 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94447.8 NaN 4365 2254 6612 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6623 38.194 NaN 592990 35 0 41733 0.327 + 21734 QADSLERSL 9 66 509.76163829723754 1017.5087236612751 2 509.76177978515625 MULTI HCD FTMS 0 0 0 6622 336390.46875 0.8044424795148996 1 -0.036468505859375 1 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 139.78183599554657 1.962818552322152E-05 2 QADS{I|L}ERS{I|L} 9 0 + 84.676 0 0 8.3219 8.3219 94.972 0 0 0 54.06747504877386 13.142492736872597 13.142492736872597 16.479400086720375 0 1.7034021960761265 1.0457574905606752 0.9559771852360797 0 + + QADS{I|L}ERS{I|L};QADS{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};QADS{I|L}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]};QA{I|L}{[DS]|[MA]|[CV]|TT}ERS{I|L};QA{I|L}{[DS]|[MA]|[CV]|TT}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};QADS[KQ]V{[QD]|[EN]|[WG]|[KD]|[RS]};QA{I|L}{[DS]|[MA]|[CV]|TT}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]} 8.3219;6.7023;5.9989;5.7615;4.1419;3.8485;3.4385 +;-;-;-;-;-;- + 618 + NaN NaN 174656.3 NaN 4366 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6624 38.198 NaN 124290 35 0 14009 0.261 + 18411 MPSRPELSA 9 40 494.24986658627694 986.4851802393539 2 494.2500305175781 MULTI HCD FTMS 0 0 0 6622 61488.23046875 0.3239069361370474 5 -0.14275360107421875 2 Unmodified _MPSRPELSA_ ENSG00000115963|ENST00000263895|RND3 37.07464296494664 0.07877380486334713 2 MPSR 4 5 41.23 0 0 4.1795 0 0 0 512.2354220025999 512.2354220025999 6.537209583838219 0 0 0 0 0.8807196863200843 0 0.3494850021680094 0 + MPSR 4.1795 + + 25 + NaN NaN 98021.1 NaN 4367 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6625 38.202 NaN 237260 35 0 68255 0.261 + 10677 IPVNEKDTL 9 50 514.7846341600375 1027.554715386875 2 514.7847290039062 MULTI HCD FTMS 0 0 0 6622 94355.671875 0.46535988318615495 -2 0.053119659423828125 3 Unmodified _IPVNEKDTL_ ENSG00000164105|ENST00000296504|SAP30 61.08992128646608 0.016056751534446034 2 {I|L}PVNE 5 4 74.412 0 0 7.2417 0 0 0 472.2400729049127 472.2400729049127 53.61046901591578 0 0 0 0 1.5 1.3979400086720375 1.1989700043360187 0 + {I|L}PVNE 7.2417 + + 101 + NaN NaN 133351.8 NaN 4368 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6626 38.205 NaN 97045 35 0 13253 0.261 -1 SSGPVDPMM 9 28 476.6913975991144 951.3682422650288 2 477.19610595703125 MULTI HCD FTMS 0 0 0 6622 30114.390625 0.7843070309024306 1 -0.036468505859375 4 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 7.289230182591677 0.29575926068275815 2 D[YV]{M(Oxidation (M))|F} 4 -1 23.94 0 0 2.5164 0 0 409.13541913461205 0 409.13541913461205 0 -0.31234684152074976 -0.31234684152074976 0 0 0.9247425010840047 0 0 0 D[YV]{M(Oxidation (M))|F} 2.5164 - 18 + NaN NaN 120613.5 NaN 4369 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6627 38.208 NaN 84846 35 0 5106.9 0.261 + 21864 QAVREYTL 8 36 490.2640990401291 978.5136451470582 2 490.26416015625 MULTI HCD FTMS 0 0 0 6622 29580.861328125 1 0 0 5 Unmodified _QAVREYTL_ ENSG00000073614|ENST00000399788|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 10.073929032068715 0.5196730168178844 2 [QA]V 3 5 8.072 0 0 0.82492 0 0 0 677.3308809869749 677.3308809869749 -0.5731938998424368 0 -0.5731938998424368 0 0 0 0 0 0 + [QA]V 0.82492 + + 21 + NaN NaN 99811.3 NaN 4370 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6628 38.212 NaN 71712 35 0 34051 0.261 -1 YIMTFFVF 8 18 542.2646343014209 1082.5147156696416 2 542.2637939453125 MULTI HCD FTMS 0 0 0 6622 19669.615234375 0.8918081131274146 -2 0.053119659423828125 6 Oxidation (M) _YIM(Oxidation (M))TFFVF_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|179|1|anti-sense 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96834.5 NaN 4371 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6629 38.215 NaN 65497 35 0 9679.2 0.261 -1 YVHMVTHF 8 34 525.2473454605481 1048.4801379878961 2 525.247314453125 MULTI HCD FTMS 0 0 0 6622 12593.771484375 0.09087323903803964 45 -1.1660385131835938 7 Oxidation (M) _YVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 8.593279151180031 0.5292430274356741 2 [YV]H[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F} 6 -1 31.171 0 0 2.973 0 0 0 211.10714136295158 211.10714136295158 29.911852558481407 0 0 0 0 0 2 0 0 [YV]H[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F} 2.973 - 18 + NaN NaN 92500.8 NaN 4372 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6630 38.218 NaN 35524 35 0 6172 0.261 + 845 AWHGLLEL 8 21 469.75630961668134 937.4980663001627 2 469.7558898925781 MULTI HCD FTMS 0 0 0 6622 8664.3564453125 0.6704051264606243 1 -0.036468505859375 8 Unmodified _AWHGLLEL_ ENST00000609898.1_1_10:45454636-45454795:-|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89627.3 NaN 4373 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6631 38.222 NaN 35429 35 0 5606.9 0.261 + -1 ENKDELDTM 9 20 555.7344772004384 1109.4544014676767 2 555.734375 MULTI HCD FTMS 0 0 0 6622 17869.4296875 0.11292566572608313 45 -1.1660385131835938 9 Oxidation (M) _ENKDELDTM(Oxidation (M))_ REV__ENSG00000169223|ENST00000303127|LMAN2;REV__ENST00000502721.5_1_5:176764092-176765519:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104721.6 NaN 4374 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6632 38.225 NaN 38301 35 0 7128.3 0.261 -1 NFKKYRCM 8 29 553.2676025702044 NaN 0 553.2671508789062 PEAK HCD FTMS 0 0 0 6622 5707.78076171875 0.6004662659632011 -11 0.27862548828125 10 Oxidation (M) _NFKKYRCM(Oxidation (M))_ ENST00000441560.6_1_14:51099028-51099193:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89205.1 NaN 4375 2255 6622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6634 38.23 NaN 294750 35 0 26353 0.327 + 26040 SPENEEHIL 9 69 534.2534967508284 1066.4924405684567 2 534.25390625 MULTI HCD FTMS 0 0 0 6633 124359.1953125 0.9651875894329329 1 -0.029895782470703125 1 Unmodified _SPENEEHIL_ ENSG00000141564|ENST00000306801|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR 100.0907132914201 0.004261551473353346 2 SPENEEH{I|L}{I|L} 9 0 + 72.437 0 0 6.7921 6.7921 91.463 0 0 0 53.75115312462057 9.137342758552691 9.137342758552691 12.460762528683702 0 2.385151878060192 0 0.9291746928241125 0.3252574989159953 + + SPENEEH{I|L}{I|L};SPEGGEEH{I|L}{I|L};SPE{[QD]|[EN]|[WG]|[KD]|[RS]}KS[YN];EEV[QA]KS[YN] 6.7921;5.6237;2.5468;0.0065061 +;-;-;- + 523 + NaN NaN 138797.2 NaN 4376 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6635 38.235 NaN 461180 35 0 42166 0.261 + 206 AETVRYSMCT 10 75 580.7568288503979 1159.4991047675958 2 580.7569580078125 MULTI HCD FTMS 0 0 0 6633 229760.28125 0.15271142877581012 -4 0.12275314331054688 2 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 12.240655878213236 0.39661705172222156 2 [YR]{I|L}EGTS 7 8 57.497 0 0 4.9588 0 0 0 350.08463634536275 350.08463634536275 27.393557111366746 0 0 0 0 2.4049471895720984 0 0.7742275032520141 0 [YR]{I|L}EGTS 4.9588 - 539 NaN NaN 151319.4 NaN 4377 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6636 38.238 NaN 91430 35 0 18838 0.261 -1 NLPQHPDVEM 10 24 598.27379777614 1194.5330426190799 2 598.2742919921875 MULTI HCD FTMS 0 0 0 6633 34782.5 0.6013274244547103 5 -0.13274765014648438 3 Oxidation (M) _NLPQHPDVEM(Oxidation (M))_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 11.494710602746466 0.4035943721457025 2 K 1 -1 6.9897 0 0 0.58514 0 0 505.14774096067987 558.2714937799436 1063.4192347406236 0 0 0 0 0 0 0 0 0 K 0.58514 - 4 + NaN NaN 94777 NaN 4378 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6637 38.242 NaN 126600 35 0 28749 0.261 + 10475 IPDPSSVVASE 11 39 550.7772091908305 NaN 0 550.7957153320312 PEAK HCD FTMS 0 0 0 6633 12602.953125 0.5845088724218254 2 -0.05644989013671875 4 Unmodified _IPDPSSVVASE_ REV__ENSG00000005187|ENST00000289416|ACSM3;REV__ENSG00000183549|ENST00000331849|ACSM5 4.897010918128616 0.3282287337590871 2 A{I|L} 2 -1 10.969 0 0 0.99761 0 0 131.05739990363037 781.3364962213499 912.3938961249803 0 0 0 0 0 0 0 0 0 A{I|L} 0.99761 - 6 + NaN NaN 102687.9 NaN 4379 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6638 38.245 NaN 31904 35 0 6157 0.261 + 3364 EEQKVEVTIA 10 18 573.3063791765788 1144.5982054199576 2 573.3060913085938 MULTI HCD FTMS 0 0 0 6633 21820.45703125 0.7696997956437154 -1 0.036468505859375 5 Unmodified _EEQKVEVTIA_ REV__ENSG00000265817|ENST00000481490|FSBP;REV__nc|ENSG00000265817|O95073-2|FSBP 2.498486711656943 0.462078817294651 2 VT[{I|L}A] 4 -1 16.198 0 0 1.4152 0 0 742.3488026349625 0 742.3488026349625 0 16.197887582883936 0 0 0 0 0 0 0 VT[{I|L}A] 1.4152 + + 4 NaN NaN 90321.3 NaN 4380 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6639 38.248 NaN 19841 35 0 2991.9 0.261 + -1 KPQCSVTGRQN 11 18 637.8171733609768 1273.6197937887534 2 637.8180541992188 MULTI HCD FTMS 0 0 0 6633 17758.134765625 1 0 0 6 Carbamidomethyl (C) _KPQC(Carbamidomethyl (C))SVTGRQN_ REV__ENST00000424435.1_1_1:154375977-154376226:-|nuORF 0.9622753412299311 0.4147004537482263 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90157.6 NaN 4381 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6640 38.252 NaN 33981 35 0 3593.8 0.262 + -1 EDCGHLAMTV 10 24 546.2282805101634 1090.4420080871266 2 546.2286987304688 MULTI HCD FTMS 0 0 0 6633 8196.640625 0.6953464980951074 -1 0.036468505859375 7 Oxidation (M) _EDCGHLAM(Oxidation (M))TV_ REV__ENSG00000126091|ENST00000347631|ST3GAL3;REV__ENST00000490541.5_1_1:44365189-44395890:+|nuORF;REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF;REV__nc|ENSG00000126091|Q11203-13|ST3GAL3;REV__nc|ENSG00000126091|Q11203-15|ST3GAL3;REV__nc|ENSG00000126091|Q11203-19|ST3GAL3;REV__nc|ENSG00000126091|Q11203-2|ST3GAL3;REV__nc|ENSG00000126091|Q11203-4|ST3GAL3;REV__nc|ENSG00000126091|Q11203-5|ST3GAL3;REV__nc|ENSG00000126091|Q11203-7|ST3GAL3 3.2813086475875832 0.45793521633868084 2 TV 2 -1 20.969 0 0 1.923 0 0 872.313280174025 0 872.313280174025 0 20.969100130080562 0 0 0 0 0 0 0 TV 1.923 + + 1 NaN NaN 86323.6 NaN 4382 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6641 38.255 NaN 28581 35 0 6570.8 0.262 + -1 VCGCHPHC 8 20 456.66710805424367 911.3196631752874 2 457.526611328125 MULTI HCD FTMS 0 0 0 6633 9093.5146484375 1 0 0 8 Carbamidomethyl (C) _VC(Carbamidomethyl (C))GCHPHC_ REV__ENST00000484122.5_1_17:12896137-12899859:-|nuORF 0 0.5419923896992614 2 N 1 -1 3.4949 0 0 0.38349 0 0 670.5905352229421 123.66148554019765 794.2520207631397 0 0 0 0 0 0 0 0 0 N 0.38349 - 1 + NaN NaN 83292.3 NaN 4383 2256 6633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6643 38.26 NaN 288610 35 0 29677 0.327 -1 HPTGKMFIL 9 47 530.2863661765339 1058.5581794198677 2 530.2866821289062 MULTI HCD FTMS 0 0 0 6642 129239.2421875 0.8059330162468652 1 -0.026554107666015625 1 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 24.020572477871973 0.15282392193088168 2 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3774279935678 720.3774279935678 7.76416574586889 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 51 + NaN NaN 130786.4 NaN 4384 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6644 38.265 NaN 206890 35 0 25313 0.261 + 1566 AYVHMVTHF 9 52 560.7657330135318 1119.5169130938634 2 560.7659301757812 MULTI HCD FTMS 0 0 0 6642 83420.109375 0.07408346312205616 49 -1.2261009216308594 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 97.07464715276575 0.004340583992084827 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 97.49 0 0 8.7082 8.7082 96.057 0 0 0 21.70432836127297 16.478174818886373 16.478174818886373 21.70432836127297 0 2.6861818737241734 1.6989700043360187 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[VP][C(Carbamidomethyl (C))Q]H{M(Oxidation (M))|F};{M(Oxidation (M))|F}QQV{M(Oxidation (M))|F}[PA]H{M(Oxidation (M))|F} 8.7082;6.7695;4.2989;3.3913 +;-;-;- + 263 NaN NaN 118752 NaN 4385 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6645 38.268 NaN 89870 35 0 11826 0.261 -1 HPVLKEMEVQ 10 25 613.3159231034261 1224.6172932736522 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6642 59964.0234375 0.44427328503130187 11 -0.298309326171875 3 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 2 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4142322725587 888.4142322725587 18.99166239860314 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 10 + NaN NaN 118637.3 NaN 4386 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6646 38.271 NaN 153370 35 0 24339 0.264 -1 VYTRHMTWI 9 39 408.20617877439923 1221.5967069233977 3 408.2061767578125 MULTI HCD FTMS 0 0 0 6642 44713.015625 0.25468506626977455 -13 0.3449897766113281 4 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 13.614867670302875 0.2427269026982664 2 VY 2 -1 42.206 0 0 3.455 0 0 0 956.4395741635244 956.4395741635244 17.74227503252014 0 0 0 0 0.4247425010840047 2 0 0 VY 3.455 + + 14 + NaN NaN 114426.7 NaN 4387 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6647 38.275 NaN 51973 35 0 12539 0.261 + 30248 VKAMEGEAL 9 27 474.2455636086824 NaN 0 474.25579833984375 PEAK HCD FTMS 0 0 0 6642 7269.701171875 1 0 0 5 Unmodified _VKAMEGEAL_ REV__tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1 3.944395688203298 0.27613285122220627 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84691.3 NaN 4388 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6648 38.278 NaN 76660 35 0 13011 0.261 + 7362 FVDTQDRSL 9 37 540.7693170141695 1079.5240810951389 2 540.7695922851562 MULTI HCD FTMS 0 0 0 6642 20483.189453125 0.9155760033614968 -2 0.06636428833007812 6 Unmodified _FVDTQDRSL_ ENSG00000198585|ENST00000521288|NUDT16;nc|ENSG00000198585|Q96DE0-2|NUDT16;nc|ENSG00000198585|Q96DE0-3|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16 26.268140514670165 0.13340543277302316 2 [{M(Oxidation (M))|F}V]DTQ 5 4 46.338 0 0 4.2924 0 0 0 486.2322176568969 486.2322176568969 34.11954370472159 0 0 0 0 0.9247425010840047 1.3010299956639813 0.4247425010840047 0 + [{M(Oxidation (M))|F}V]DTQ 4.2924 + + 70 + NaN NaN 96275.7 NaN 4389 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6649 38.281 NaN 155390 35 0 23786 0.261 + 27701 TANQDGRVIL 10 43 543.7985145153913 1085.5824760975825 2 543.7986450195312 MULTI HCD FTMS 0 0 0 6642 37262.57421875 0.2322632070217991 -6 0.17239761352539062 7 Unmodified _TANQDGRVIL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 17.44264345198275 0.3479594151168503 2 V{I|L}{I|L} 3 7 28.188 0 0 2.5965 0 0 742.335252830275 0 742.335252830275 0 22.501225267834002 0 0 0 0.3494850021680094 0 0 0 + V{I|L}{I|L} 2.5965 + + 26 NaN NaN 113096.7 NaN 4390 2257 6642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6651 38.287 NaN 213110 35 0 32187 0.327 + 4400 EYDKIANI 8 47 483.25040215236544 964.4862513715309 2 483.2505187988281 MULTI HCD FTMS 0 0 0 6650 164978.578125 0.6788839858442025 3 -0.07629776000976562 1 Unmodified _EYDKIANI_ REV__ENSG00000178209|ENST00000345136|PLEC;REV__nc|ENSG00000178209|Q15149-2|PLEC;REV__nc|ENSG00000178209|Q15149-3|PLEC;REV__nc|ENSG00000178209|Q15149-5|PLEC;REV__nc|ENSG00000178209|Q15149-6|PLEC;REV__nc|ENSG00000178209|Q15149-7|PLEC;REV__nc|ENSG00000178209|Q15149-8|PLEC;REV__nc|ENSG00000178209|Q15149-9|PLEC;REV__nc|ENSG00000178209|Q15149|PLEC 21.74664581756881 0.4337896562907935 2 [YE]DKV[QA]{I|L} 8 -1 + 42.63 0 0 4.4199 4.4199 89.403 0 0 0 8.679767852945943 13.728721920568248 8.679767852945943 24.948500216800934 0 0 1.2218487496163564 0.3807196863200844 0.5 [YE]DKV[QA]{I|L};[YT][Q{I|L}]E[QA]{I|L} 4.4199;1.8332 -;- 167 NaN NaN 114106.8 NaN 4391 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6652 38.291 NaN 408530 35 0 153910 0.262 + 24953 RYTERVDYL 9 31 405.5436591889532 1213.6091481670596 3 405.5436706542969 MULTI HCD FTMS 0 0 0 6650 149792.1875 0.7851158923665543 2 -0.049835205078125 2 Unmodified _RYTERVDYL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 12.872603262515298 0.2491399024913319 2 Y{I|L} 2 7 30.969 0 0 2.5518 0 0 919.4518738524097 0 919.4518738524097 0 23.182503180159344 0 0 0 1 0 0 0 + Y{I|L} 2.5518 + + 11 + NaN NaN 166462.6 NaN 4392 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6653 38.295 NaN 97490 35 0 35558 0.261 + 24955 RYTERVDYL 9 27 607.8117119483265 1213.608870963453 2 607.8120727539062 MULTI HCD FTMS 0 0 0 6650 53308.17578125 0.5948344497409114 2 -0.049835205078125 3 Unmodified _RYTERVDYL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 9.5439744041441 0.27789851728676895 2 {M(Oxidation (M))|F} 1 9 8.2268 0 0 0.67788 0 0 664.355893523803 399.1886385553344 1063.5445320791375 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 0.67788 - 3 + NaN NaN 103877.8 NaN 4393 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6654 38.298 NaN 190630 35 0 33412 0.262 + 10680 IPVNEKETL 9 38 521.7922429943785 1041.569933055557 2 521.7923583984375 MULTI HCD FTMS 0 0 0 6650 29949.9375 0.5596814352495071 1 -0.02658843994140625 4 Unmodified _IPVNEKETL_ ENSG00000164576|ENST00000297109|SAP30L;ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L 12.240655878213236 0.2545997876781172 2 {I|L}PV 3 6 46.427 0 0 4.4574 0 0 0 729.3438765667108 729.3438765667108 46.42667503568731 0 0 0 0 0.5 1.5228787452803376 0 0 + {I|L}PV 4.4574 + + 4 + NaN NaN 134339.4 NaN 4394 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6655 38.301 NaN 115410 35 0 16167 0.261 -1 MPAPHTSITM 10 46 551.2573544193356 NaN 0 551.257080078125 PEAK HCD FTMS 0 0 0 6650 16854.185546875 0.5355016533863937 1 -0.02658843994140625 5 Oxidation (M) _MPAPHTSITM(Oxidation (M))_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 24.020572477871973 0.24806657497419846 2 C{I|L}QV 4 -1 16.887 0 0 1.5345 0 0 132.01769862950908 522.2287691705686 654.2464678000777 0 0 0 0 0 0 0 0 0.8494850021680094 C{I|L}QV 1.5345 - 92 + NaN NaN 117606.8 NaN 4395 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6656 38.305 NaN 76183 35 0 15407 0.261 -1 SSGPVDPMM 9 23 476.6913975991144 951.3682422650288 2 476.69097900390625 MULTI HCD FTMS 0 0 0 6650 27121.28125 0.5088376120078104 18 -0.47150421142578125 6 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M(Oxidation (M))_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.5485 0 0 427.20744746770055 406.11130701236567 833.3187544800662 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.5485 + + 5 + NaN NaN 118237.1 NaN 4396 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6657 38.308 NaN 79247 35 0 6982.8 0.261 + 27620 TAISENYQTM 10 47 587.2579009623914 1172.5012489915828 2 587.2583618164062 MULTI HCD FTMS 0 0 0 6650 31869.822265625 0.6171959124099077 -2 0.05644989013671875 7 Oxidation (M) _TAISENYQTM(Oxidation (M))_ ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000565906.2_1_15:89532752-89533049:-|nuORF 49.74193281347159 0.07872806610313077 2 E{[ES]|[DT]|[{I|L}C]}NYQT{M(Oxidation (M))|F} 8 3 41.359 0 0 3.5274 0 0 156.12010390449376 0 156.12010390449376 0 26.66660845185247 0 0 0 1.8807196863200843 0 0.6139829889124311 0.3494850021680094 E{[ES]|[DT]|[{I|L}C]}NYQT{M(Oxidation (M))|F} 3.5274 - 91 NaN NaN 101273.1 NaN 4397 2258 6650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6659 38.313 NaN 245370 35 0 62213 0.327 -1 0 49 425.77486986061933 849.5351867880387 2 425.7748107910156 MULTI HCD FTMS 0 0 0 6658 151141.109375 0.647202502410191 3 -0.07622528076171875 1 NaN NaN 2 K 1 -1 3.0989 0 0 0.36478 0 0 424.7503795144043 293.66083704166255 718.4112165560668 0 0 0 0 0 0 0 0 0 K 0.36478 - 2 + NaN NaN 121271.7 NaN 4398 2259 6658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6660 38.318 NaN 326570 35 0 37312 0.261 + 9464 HPVSREWTL 9 58 562.7957071357245 1123.5768613382488 2 562.7959594726562 MULTI HCD FTMS 0 0 0 6658 129278.8203125 0.11578920432484864 -7 0.20579147338867188 2 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 21.536976647645854 0.1742816388551942 2 HPV{I|L} 4 5 36.938 0 0 3.2876 0 0 0 674.2920015924436 674.2920015924436 12.769250191953674 0 0 0 0 0.5 0 0 0 HPV{I|L} 3.2876 - 135 + NaN NaN 127362.6 NaN 4399 2259 6658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6661 38.321 NaN 155150 35 0 29202 0.262 + 31063 VSYRDSGL 8 46 448.726864341935 895.4391757506701 2 449.2190856933594 MULTI HCD FTMS 0 0 0 6658 15443.59375 0.5820737692035604 -3 0.083038330078125 3 Unmodified _VSYRDSGL_ PCDH19|p.D375Y|1|0.3|ENSG00000165194|chrX:100407475-100407475|C/A|missense_variant 4.75600775471527 0.5349361699807423 2 [WR]Y 3 7 6.9627 0 0 0.77758 0 0 0 387.1506746881469 387.1506746881469 1.4781748188863748 0 0 0 0 0 0 0 0 [WR]Y 0.77758 - 21 + NaN NaN 119659.8 NaN 4400 2259 6658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6662 38.325 NaN 140640 35 0 13065 0.261 + 27621 TAISENYQTM 10 49 587.2579009623914 1172.5012489915828 2 587.7468872070312 MULTI HCD FTMS 0 0 0 6658 26167.6640625 0.752270735272071 -2 0.053142547607421875 4 Oxidation (M) _TAISENYQTM(Oxidation (M))_ ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000565906.2_1_15:89532752-89533049:-|nuORF 41.34703777101937 0.13371733111605905 2 SENYQT{M(Oxidation (M))|F} 7 3 45.354 0 0 3.8682 0 0 285.16853530097814 0 285.16853530097814 0 30.13759790242446 0 0 0 2.1237125054200234 0 0 0.3807196863200844 + SENYQT{M(Oxidation (M))|F} 3.8682 + + 257 NaN NaN 106693.9 NaN 4401 2259 6658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6663 38.328 NaN 36336 35 0 4146.5 0.262 -1 MPVGMTHGL 9 28 479.7277572374349 957.4409615416698 2 479.7275695800781 MULTI HCD FTMS 0 0 0 6658 13122.1201171875 0.5332097078798071 -4 0.1195068359375 5 Oxidation (M) _MPVGM(Oxidation (M))THGL_ ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant 7.289230182591677 0.29575926068275815 2 MPV 3 -1 30.005 0 0 3.1339 0 0 0 627.2572115533811 627.2572115533811 30.00508444608478 0 0 0 0 0.3807196863200844 0 0 0 MPV 3.1339 + + 3 + NaN NaN 98182.6 NaN 4402 2259 6658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6664 38.331 NaN 65999 35 0 6357.1 0.261 + 9329 HPRTPYQEL 9 31 570.7934119210873 1139.5722709089746 2 570.793212890625 MULTI HCD FTMS 0 0 0 6658 13085.0244140625 0.09515545537874912 -7 0.20579147338867188 6 Unmodified _HPRTPYQEL_ REV__ENSG00000138382|ENST00000260953|METTL5;REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF 5.731851221503515 0.3075653528928475 2 HPV 3 -1 31.198 0 0 2.7377 0 0 0 803.3705825011547 803.3705825011547 25.511525224473814 0 0 0 0 0.5 0 0 0 HPV 2.7377 - 12 + NaN NaN 109605.9 NaN 4403 2259 6658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6666 38.337 NaN 296630 35 0 77239 0.327 + 10678 IPVNEKDTL 9 65 514.7846341600375 1027.554715386875 2 514.7848510742188 MULTI HCD FTMS 0 0 0 6665 154038.03125 0.7597118308233687 3 -0.07946395874023438 1 Unmodified _IPVNEKDTL_ ENSG00000164105|ENST00000296504|SAP30 78.06048673739656 0.006479972202176041 2 {I|L}PVNE 5 4 79.993 0 0 7.7848 0 0 0 472.2406405084594 472.2406405084594 48.24031267727719 0 0 0 0 1.5 1.6989700043360187 1.1549471895720984 0 + {I|L}PVNE 7.7848 + + 222 + NaN NaN 140713.6 NaN 4404 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6667 38.341 NaN 99821 35 0 8895.7 0.261 + 21735 QADSLERSL 9 42 509.76163829723754 1017.5087236612751 2 509.7618103027344 MULTI HCD FTMS 0 0 0 6665 61554.9140625 0.14720211270779074 6 -0.16229629516601562 2 Unmodified _QADSLERSL_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 10.799506525563784 0.2670509983294061 2 [QA]DS 4 5 16.198 0 0 1.5919 0 0 0 613.3300656669131 613.3300656669131 4.515449934959717 0 0 0 0 0 0 0 0 + [QA]DS 1.5919 + + 42 + NaN NaN 99561.3 NaN 4405 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6668 38.344 NaN 205230 35 0 72923 0.261 + 30824 VPWHRLGGA 9 37 496.77683037384213 NaN 0 496.7618408203125 PEAK HCD FTMS 0 0 0 6665 1783.8817138671875 0.42041202542410133 -1 0.02324676513671875 3 Unmodified _VPWHRLGGA_ ENST00000473212.1_1_21:46927018-46932309:+|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L}A 2 7 9.464 0 0 0.95447 0 0 131.1262236483887 673.2681978815061 804.3944215298948 0 0 0 0 0 0 0 0 0 {I|L}A 0.95447 - 5 + NaN NaN 121217.2 NaN 4406 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6669 38.348 NaN 35553 35 0 4411.3 0.261 + -1 AIYCFLFLV 9 22 573.3063791765788 1144.5982054199576 2 574.2908935546875 MULTI HCD FTMS 0 0 0 6665 5764.560546875 0.5214526303459316 2 -0.052978515625 4 Carbamidomethyl (C) _AIYC(Carbamidomethyl (C))FLFLV_ REV__ENSG00000181927|ENST00000641760|OR4P4 2.302733041254933 0.33356062215410776 2 TV 2 -1 13.583 0 0 1.1867 0 0 129.12818567482208 812.3357027643186 941.4638884391406 0 0 0 0 0 0 0 0.5 0 TV 1.1867 - 8 + NaN NaN 102982 NaN 4407 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6670 38.351 NaN 42401 35 0 4578.6 0.261 -1 TATKIEITM 9 23 512.2731389515716 1022.5317249699432 2 512.273193359375 MULTI HCD FTMS 0 0 0 6665 19505.517578125 0.13187276874020543 -14 0.3615226745605469 5 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 38.175570920033316 0.07371992880350783 2 {I|L}T{M(Oxidation (M))|F} 3 -1 35.49 0 0 3.4708 0 0 643.3543700888869 0 643.3543700888869 0 30.00508444608478 0 0 0 1.3807196863200843 0 0 0 {I|L}T{M(Oxidation (M))|F} 3.4708 + + 12 + NaN NaN 103016.1 NaN 4408 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6671 38.354 NaN 32508 35 0 4538.3 0.261 + 30614 VPCMCCYV 8 24 459.1721419192494 NaN 0 459.1722412109375 PEAK HCD FTMS 0 0 0 6665 8811.6015625 0.47498344442327106 65 -1.6523208618164062 6 Unmodified _VPCMCCYV_ ENSG00000166068|ENST00000299084|SPRED1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85165.2 NaN 4409 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6672 38.358 NaN 12784 35 0 3243.1 0.261 -1 WMHLEDIML 9 13 602.2784423828125 NaN 0 602.2784423828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _WM(Oxidation (M))HLEDIML_ L1MB3_dup15674|chr19:3124440-3124948:-|1.03412094428896|0.2336207413901935|2.15|520.0|9|3|sense 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82766 NaN 4410 2260 6665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6674 38.363 NaN 90738 35 0 24425 0.327 -1 YSCGCGSFRR 10 35 596.7520055748237 1191.4894582164472 2 596.7521362304688 MULTI HCD FTMS 0 0 0 6673 56787.7109375 0.8714824702446216 -1 0.026462554931640625 1 Carbamidomethyl (C) _YSCGC(Carbamidomethyl (C))GSFRR_ ENSG00000244362|ENST00000334849|KRTAP19-7 1.3295316138638542 0.46826628246186464 2 S 1 -1 7.3464 0 0 0.61657 0 0 353.10794073773474 748.3255098932249 1101.4334506309597 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.61657 + + 12 + NaN NaN 114998.8 NaN 4411 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6675 38.367 NaN 90049 35 0 15084 0.262 + 791 ATAGIIGVNR 10 34 486.28518083953384 970.5558087458677 2 486.2847595214844 MULTI HCD FTMS 0 0 0 6673 33352.8125 0.22004613734281644 -4 0.10285186767578125 2 Unmodified _ATAGIIGVNR_ CLTC-VMP1|1|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;ENSG00000141367|ENST00000269122|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC 38.175570920033316 0.1612389583597779 2 [TA]A{[VA]|[{I|L}G]}{I|L}GV[RN] 10 0 + 38.429 0 0 3.9594 3.9594 83.605 0 0 0 31.438937347570075 7.269987279362624 7.269987279362624 6.532125137753436 0 1.274227503252014 0 0 0 + + [TA]A{[VA]|[{I|L}G]}{I|L}GV[RN];[TA][Q{I|L}]{I|L}GV[RN];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VG]{I|L}G[KS][PG];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L}G[KS][PG];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K[TA]{[VA]|[{I|L}G]}A[PG];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K[TA][Q{I|L}][PG];[TA][KS][VP]V[RN] 3.9594;3.2864;2.2443;1.3794;0.97081;0.29778;0.041587 +;-;-;-;-;-;- + 60 + NaN NaN 94515.7 NaN 4412 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6676 38.371 NaN 90175 35 0 16544 0.261 + -1 SWMSTYWT 8 26 539.2203926826844 1076.4262324321687 2 539.2213745117188 MULTI HCD FTMS 0 0 0 6673 25095.13671875 0.8033611503435949 -1 0.026462554931640625 3 Oxidation (M) _SWM(Oxidation (M))STYWT_ REV__ENST00000244670.12_1_6:42988531-42988804:+|nuORF 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111229.5 NaN 4413 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6677 38.374 NaN 54644 35 0 7850.2 0.261 + 8969 HPDYGSHIQAL 11 29 619.3017814639649 1236.5890099947296 2 619.3017578125 MULTI HCD FTMS 0 0 0 6673 22494.853515625 0.3124611029861078 -6 0.16921615600585938 4 Unmodified _HPDYGSHIQAL_ ENSG00000121691|ENST00000241052|CAT 22.65808497894818 0.2596617744649775 2 DC{I|L} 3 9 28.288 0 0 2.2876 0 0 887.4514027326187 0 887.4514027326187 0 18.824543621168388 0 0 0 0.5 0 0.4247425010840047 0 DC{I|L} 2.2876 - 10 NaN NaN 99045.1 NaN 4414 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6678 38.378 NaN 67600 35 0 11973 0.263 -1 RFHGEEGM 8 29 489.70731177606143 977.4000706189229 2 489.7079162597656 MULTI HCD FTMS 0 0 0 6673 8826.421875 0.4806851723620768 10 -0.28282928466796875 5 Oxidation (M) _RFHGEEGM(Oxidation (M))_ ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1 8.593279151180031 0.5292430274356741 2 G{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.9914 0 0 755.3322585845464 0 755.3322585845464 0 9.771212547196624 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.9914 + + 32 + NaN NaN 98611.4 NaN 4415 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6679 38.381 NaN 45140 35 0 6046.9 0.261 + 35285 YVVMYMLM 8 31 525.2473454605481 1048.4801379878961 2 525.2471313476562 MULTI HCD FTMS 0 0 0 6673 14445.2529296875 0.10423302694296745 51 -1.2952461242675781 6 Unmodified _YVVMYMLM_ tr|U7SU28|U7SU28_FUSNUGlutamate/gamma-aminobutyrateantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00994PE=4SV=1 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106452 NaN 4416 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6680 38.384 NaN 45928 35 0 6100.2 0.261 + -1 DDEESLKQM 9 27 555.7344772004384 1109.4544014676767 2 555.7347412109375 MULTI HCD FTMS 0 0 0 6673 10508.19921875 0.06640645018401069 51 -1.2952461242675781 7 Oxidation (M) _DDEESLKQM(Oxidation (M))_ REV__ENSG00000154864|ENST00000674853|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5|PIEZO2 0.5247636613948944 0.34703895399870666 2 TE 2 -1 7.9588 0 0 0.71736 0 0 130.96062034461823 745.3781221979124 876.3387425425306 0 0 0 0 0 0 0 0 0 TE 0.71736 - 3 + NaN NaN 110625.9 NaN 4417 2261 6673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6682 38.389 NaN 2388600 35 0 222230 0.327 + 14616 LFSQPFGDFC 10 110 580.7568288503979 1159.4991047675958 2 580.7576904296875 MULTI HCD FTMS 0 0 0 6681 1441045.75 0.9577989468700169 2 -0.052947998046875 1 Unmodified _LFSQPFGDFC_ ENST00000333751.4_1_17:7255914-7256001:+|nuORF 24.990960013464015 0.27735500881591096 2 [YR]{I|L}EGTSC[MT] 10 10 + 78.676 0 0 6.7853 6.7853 86.981 0 0 0 12.418782227637607 30.011037044048763 12.418782227637607 4.075221787320515 0 2.524227503252014 1.0457574905606752 1.1549471895720984 0 [YR]{I|L}EGTSC[MT];[YR]{I|L}EGTS[MT]C;[YR]{I|L}EGTGD{M(Oxidation (M))|F}C;[YR]{I|L}EGG{[CP]|[EA]}YC;[YR]{I|L}EGGSE{M(Oxidation (M))|F}C;[YR]{I|L}EGGTD{M(Oxidation (M))|F}C;[YR]{I|L}EGGS{M(Oxidation (M))|F}[MT];[YR]{I|L}EN{[CP]|[EA]}YC;[YR]{I|L}ENSE{M(Oxidation (M))|F}C;[YR]{I|L}EGT[MT]SC 6.7853;6.4339;5.6842;4.6638;4.6407;4.3454;4.0462;3.9938;3.9707;3.9486 -;-;-;-;-;-;-;-;-;- 2289 NaN NaN 453038.2 NaN 4418 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6683 38.394 NaN 41866 35 0 9703.6 0.261 -1 0 6 607.2096569241792 606.2023804575791 1 607.212158203125 MULTI HCD FTMS 0 0 0 6681 15502.56640625 0.5915897848999943 1 -0.026485443115234375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91901.8 NaN 4419 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6684 38.397 NaN 95340 35 0 26393 0.263 + 23911 RTEFTTAL 8 22 469.75044670293903 937.4863404726781 2 469.7503662109375 MULTI HCD FTMS 0 0 0 6681 27799.94140625 0.9214927156888324 -1 0.026515960693359375 3 Unmodified _RTEFTTAL_ ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118935.7 NaN 4420 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6685 38.401 NaN 75667 35 0 13475 0.261 + 9114 HPGDGLAHLAL 11 32 550.7959685998555 1099.577384266511 2 550.7955322265625 MULTI HCD FTMS 0 0 0 6681 19134.24609375 0.052030381851870894 20 -0.5309982299804688 4 Unmodified _HPGDGLAHLAL_ ENST00000602351.5_1_19:49645338-49651464:+|nuORF 5.296884461304476 0.39569033063702824 2 C{I|L} 2 10 24.464 0 0 2.2249 0 0 865.466600486525 0 865.466600486525 0 24.463950151760656 0 0 0 0.5 0 0 0 C{I|L} 2.2249 - 9 NaN NaN 108128.1 NaN 4421 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6686 38.404 NaN 124440 35 0 11657 0.261 -1 ADKMDMSL 8 51 492.7042973904869 983.3940418477738 2 492.7045593261719 MULTI HCD FTMS 0 0 0 6681 19587.8828125 0.10481491198762848 -42 1.1626739501953125 5 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 6.723162845929126 0.5320176132289695 2 S{I|L} 2 -1 19.38 0 0 1.9708 0 0 765.2669736626855 0 765.2669736626855 0 0.4402281476391998 0 0 0 0.3807196863200844 0 0 0 S{I|L} 1.9708 + + 74 NaN NaN 106701.1 NaN 4422 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6687 38.407 NaN 40637 35 0 4737.2 0.261 + -1 WPWCPCGC 8 29 533.1908039009444 NaN 0 533.190673828125 PEAK HCD FTMS 0 0 0 6681 7655.86083984375 0.5329230274557683 -13 0.344818115234375 6 2 Carbamidomethyl (C) _WPWC(Carbamidomethyl (C))PC(Carbamidomethyl (C))GC_ REV__ENST00000310574.7_1_2:27428362-27428952:-|nuORF 0 0.38822285293237185 2 Y 1 -1 1.9897 0 0 0.18694 0 0 696.252810339195 202.02022730045158 898.2730376396465 0 0 0 0 0 0 0 0 0 Y 0.18694 - 1 + NaN NaN 87168.6 NaN 4423 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6688 38.411 NaN 36911 35 0 5411.7 0.261 + 17418 LYRGEASD 8 31 455.7167871664918 909.4190213997837 2 455.71649169921875 MULTI HCD FTMS 0 0 0 6681 9660.3759765625 0.05040638587299918 19 -0.5078201293945312 7 Unmodified _LYRGEASD_ ENST00000510365.5_1_4:8376552-8417570:-|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 87870.5 NaN 4424 2262 6681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6690 38.416 NaN 301370 35 0 49212 0.327 -1 VYTRHMTWI 9 46 408.20617877439923 1221.5967069233977 3 408.2062072753906 MULTI HCD FTMS 0 0 0 6689 131830.75 0.7509071537856955 -7 0.18574905395507812 1 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 21.590151480376914 0.17382222009858564 2 VY 2 -1 42.206 0 0 3.455 0 0 0 956.4402257715257 956.4402257715257 16.237125054200234 0 0 0 0 0.4247425010840047 2 0 0 VY 3.455 + + 11 + NaN NaN 128433.7 NaN 4425 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6691 38.42 NaN 101540 35 0 11369 0.261 -1 HPTGKMFIL 9 33 530.2863661765339 1058.5581794198677 2 530.28662109375 MULTI HCD FTMS 0 0 0 6689 38274.03515625 0.23867602498522367 7 -0.20320892333984375 2 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 2 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3765352838499 720.3765352838499 29.960762528683702 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 12 + NaN NaN 112306.8 NaN 4426 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6692 38.424 NaN 66031 35 0 5152.2 0.261 -1 HPVLKEMEVQ 10 28 613.3159231034261 1224.6172932736522 2 613.3160400390625 MULTI HCD FTMS 0 0 0 6689 36625.3515625 0.2713571291802662 17 -0.4515495300292969 3 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 4.897010918128616 0.4493830473644964 2 HPV 3 -1 31.198 0 0 2.5476 0 0 0 888.4125460260374 888.4125460260374 31.197887582883936 0 0 0 0 0.5 0 0 0 HPV 2.5476 + + 4 + NaN NaN 108977.9 NaN 4427 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6693 38.427 NaN 185430 35 0 20064 0.263 + 682 APVETEPKL 9 49 492.27448731804503 982.5344217028901 2 492.2737731933594 MULTI HCD FTMS 0 0 0 6689 70075.59375 0.32422729002199113 -4 0.10271072387695312 4 Unmodified _APVETEPKL_ ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B 53.40400417844725 0.026808823219830042 2 APVE{[ET]|[MV]}PK{I|L} 9 0 + 63.082 0 0 6.4203 6.4203 90.774 0 0 0 42.713118258533385 8.256886463274284 8.256886463274284 12.397868585481078 0 2.473197507588033 0 0.4247425010840047 0 + + APVE{[ET]|[MV]}PK{I|L};[PA]VE{[ET]|[MV]}PK{I|L};[PA]VTEEPK{I|L};{NN|[MP]|[D{I|L}]|[EV]}PA{[ET]|[MV]}PK{I|L};{NN|[MP]|[D{I|L}]|[EV]}P{[ET]|[MV]}APK{I|L};[PA]V[YR][HQ]{I|L};[PA]VTV{[ET]|[MV]}[PG]{I|L};A[{I|L}T][WH]RS{I|L};{[TV]|[{I|L}S]}[PA]EEPK{I|L} 6.4203;5.1585;4.2791;4.0386;3.9127;2.4559;1.8788;1.1697;1.1056 +;+;-;-;-;-;-;-;- + 161 + NaN NaN 107071.5 NaN 4428 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6694 38.431 NaN 61935 35 0 7998.7 0.261 + 16502 LTEHFHLTL 9 28 555.8004429797346 1109.5863330262691 2 555.7991943359375 MULTI HCD FTMS 0 0 0 6689 20357.73828125 0.538831448202162 -5 0.12929916381835938 5 Unmodified _LTEHFHLTL_ REV__ENST00000602865.1_1_1:2282646-2283036:-|nuORF 10.073929032068715 0.27331982688540024 2 ET{I|L} 3 -1 26.198 0 0 2.361 0 0 748.4016192806413 0 748.4016192806413 0 13.750612633917 0 0 0 0 0 0 0 ET{I|L} 2.361 - 20 NaN NaN 92006.1 NaN 4429 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6695 38.434 NaN 16320 35 0 5388.6 0.261 + 4934 FANEEGEAQKF 11 15 635.2908320082919 1268.5671110833837 2 635.2904663085938 MULTI HCD FTMS 0 0 0 6689 9919.2099609375 0.33825645355913087 -3 0.07946395874023438 6 Unmodified _FANEEGEAQKF_ ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93286.9 NaN 4430 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6696 38.437 NaN 17952 35 0 2947.9 0.261 -1 LPLNIECFMN 10 20 626.2913760842233 NaN 0 626.2914428710938 PEAK HCD FTMS 0 0 0 6689 7540.26806640625 0.6976355111983317 2 -0.04299163818359375 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LPLNIECFM(Oxidation (M))N_ ENSG00000120694|ENST00000320027|HSPH1;ENSG00000164070|ENST00000296464|HSPA4L;HSPH1|p.D294H|1|0.05|ENSG00000120694|chr13:31150975-31150975|C/G|missense_variant;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87287.8 NaN 4431 2263 6689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6698 38.442 NaN 266900 35 0 42921 0.327 + 27702 TANQDGRVIL 10 53 543.7985145153913 1085.5824760975825 2 543.7987670898438 MULTI HCD FTMS 0 0 0 6697 128630.2890625 0.8017718604841871 1 -0.016529083251953125 1 Unmodified _TANQDGRVIL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 34.221707139014875 0.19555013683537745 2 {[QN]|[E{I|L}]|[KN]}[TA]DRGV{I|L}{I|L} 10 6 + 37.611 0 0 3.4646 3.4646 81.604 0 0 0 0.4301474503096614 18.8327426555786 0.4301474503096614 2.649567920245424 0 1.6435078169319297 0 0.4247425010840047 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}[TA]DRGV{I|L}{I|L};[TA]NQDGVR{I|L}{I|L};[TA]N[AG]DGVR{I|L}{I|L};[TA]GGQDGVR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}V{I|L}{I|L};[TA]GG[AG]DGVR{I|L}{I|L} 3.4646;3.2205;2.3763;2.3763;1.6951;1.5354 -;-;-;-;-;- 126 NaN NaN 123890.4 NaN 4432 2264 6697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6699 38.447 NaN 56887 35 0 5493.8 0.261 + 35017 YTELQQAL 8 39 483.25040215236544 964.4862513715309 2 483.2498474121094 MULTI HCD FTMS 0 0 0 6697 36873.94140625 0.151735628953558 9 -0.2563133239746094 2 Unmodified _YTELQQAL_ ENSG00000162517|ENST00000373703|PEF1 12.531546534597751 0.5015908124873912 2 E[QA]{I|L} 4 4 17.039 0 0 1.7667 0 0 505.26487929511876 0 505.26487929511876 0 12.43501263708417 0 0 0 0 0 0.4247425010840047 0.5 E[QA]{I|L} 1.7667 - 19 NaN NaN 94953.6 NaN 4433 2264 6697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6700 38.45 NaN 90447 35 0 11366 0.261 -1 MPAPHTSITM 10 38 551.2573544193356 NaN 0 551.2570190429688 PEAK HCD FTMS 0 0 0 6697 7262.66845703125 0.23075401394631903 7 -0.20336532592773438 3 Oxidation (M) _MPAPHTSITM(Oxidation (M))_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 18.1463463914782 0.29565035219289926 2 TT 2 -1 9.8206 0 0 0.89238 0 0 131.04252022005488 764.3462008111936 895.3887210312485 0 0 0 0 0 0 0 0.4247425010840047 0 TT 0.89238 - 5 + NaN NaN 102843 NaN 4434 2264 6697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6701 38.454 NaN 53247 35 0 8353.7 0.262 + -1 VPCPVCAL 8 26 458.2245429099011 914.4345328866023 2 458.2242126464844 MULTI HCD FTMS 0 0 0 6697 24606.763671875 0.6044020586775488 -1 0.026462554931640625 4 2 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))PVC(Carbamidomethyl (C))AL_ REV__ENSG00000042832|ENST00000220616|TG;REV__nc|ENSG00000042832|P01266-2|TG;REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant 6.354104778181461 0.5325651638111438 2 A{I|L} 2 -1 25.969 0 0 2.8399 0 0 712.3018637021711 0 712.3018637021711 0 21.989700043360187 0 0 0 0.5 0 0 0 A{I|L} 2.8399 + + 3 NaN NaN 100132.9 NaN 4435 2264 6697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6703 38.459 NaN 1798900 35 0 190550 0.327 + 9465 HPVSREWTL 9 93 562.7957071357245 1123.5768613382488 2 562.7960815429688 MULTI HCD FTMS 0 0 0 6702 1098728.875 0.9840818619589853 -1 0.016529083251953125 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 100.0907132914201 0.004261551473353346 2 HPVSREWT{I|L} 9 0 + 57.052 0 0 5.0778 5.0778 88.653 0 0 0 19.7575649656781 2.0193091132104968 2.0193091132104968 12.483718508064698 0 2.0431576817365436 0 1.2218487496163566 0 + + HPVSREWT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[QP]E[PA]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VMA{[VA]|[{I|L}G]}[{I|L}A]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VM[Q{I|L}][{I|L}A]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[QP]E[PA]{I|L}H;[VP]H[QP]E[PA]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]RE{[CT]|[{M(Oxidation (M))|F}G]}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]RE[PA]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PA]R{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L};[VP]H[QP]E[PA]{I|L}H 5.0778;3.9667;3.709;3.3916;3.3599;3.3411;3.1679;2.9466;2.8926;2.7343 +;-;-;-;-;-;-;-;-;- + 5062 + NaN NaN 353594.8 NaN 4436 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6704 38.463 NaN 273510 35 0 32036 0.261 + -1 SALYVCLMAI 10 55 570.7934119210873 1139.5722709089746 2 570.7935180664062 MULTI HCD FTMS 0 0 0 6702 131204.5 0.9541307337435019 -1 0.016529083251953125 2 Carbamidomethyl (C) _SALYVC(Carbamidomethyl (C))LMAI_ REV__ENSG00000164039|ENST00000296424|BDH2;REV__ENST00000475058.5_1_4:104000861-104006895:-|nuORF;REV__nc|ENSG00000164039|Q9BUT1-3|BDH2 10.073929032068715 0.4168838835836452 2 HPVT 4 -1 44.553 0 0 3.9096 0 0 0 702.330114114545 702.330114114545 20.74031267727719 0 0 0 0 0.5 0 0.7614393726401688 0 HPVT 3.9096 - 62 + NaN NaN 127477.1 NaN 4437 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6705 38.467 NaN 173350 35 0 31060 0.263 + 30147 VGNGPEGPGL 10 39 448.726864341935 895.4391757506701 2 449.2190856933594 MULTI HCD FTMS 0 0 0 6702 21263.28515625 0.8014197172564549 3 -0.09946441650390625 3 Unmodified _VGNGPEGPGL_ ENSG00000177602|ENST00000325418|HASPIN;nc|ENSG00000177602|Q8TF76-2|HASPIN 8.155526934196011 0.43213520406898465 2 VG{I|L} 3 7 22.703 0 0 2.5354 0 0 608.2589588849625 0 608.2589588849625 0 18.723637474483468 0 0 0 0.5 0 0 0 VG{I|L} 2.5354 - 11 NaN NaN 103742.5 NaN 4438 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6706 38.47 NaN 130470 35 0 15769 0.261 -1 TAISENYQTM 10 54 587.2579009623914 1172.5012489915828 2 587.7471923828125 MULTI HCD FTMS 0 0 0 6702 8367.640625 0.24055380527763537 4 -0.11598968505859375 4 Oxidation (M) _TAISENYQTM(Oxidation (M))_ ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000565906.2_1_15:89532752-89533049:-|nuORF 4.897010918128616 0.4493830473644964 2 S 1 -1 10.797 0 0 0.92084 0 0 352.1292943829888 730.3159895202662 1082.445283903255 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.92084 + + 47 + NaN NaN 99566.9 NaN 4439 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6707 38.474 NaN 117740 35 0 27954 0.261 + 25070 SACPEYNRL 9 26 526.7450242243153 1051.4754955154306 2 526.7454223632812 MULTI HCD FTMS 0 0 0 6702 32968.90625 0.5201929117641747 -3 0.06947708129882812 5 Unmodified _SACPEYNRL_ ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 5.731851221503515 0.3075653528928475 2 {[SA]|[TG]}C 3 6 15.458 0 0 1.4701 0 0 0 787.3731360958824 787.3731360958824 13.863781092484688 0 0 0 0 0.5 0 0 0 + {[SA]|[TG]}C 1.4701 + + 6 + NaN NaN 99753.1 NaN 4440 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6708 38.477 NaN 89125 35 0 21819 0.263 + 25487 SFECECFEGY 10 32 405.1443928309737 1212.411349093121 3 405.1445617675781 MULTI HCD FTMS 0 0 0 6702 12962.3466796875 0.2973731444427557 4 -0.11598968505859375 6 Unmodified _SFECECFEGY_ ENSG00000138829|ENST00000262464|FBN2;nc|ENSG00000138829|P35556-2|FBN2 1.6526216038709556 0.46655611578153744 2 {I|L} 1 10 13.979 0 0 1.153 0 0 1081.3170935772991 0 1081.3170935772991 0 13.979400086720375 0 0 0 0 0 0 0 {I|L} 1.153 - 3 + NaN NaN 92822 NaN 4441 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6709 38.48 NaN 84194 35 0 9733.3 0.261 + 31566 VYHHLVETL 9 27 555.8004429797346 1109.5863330262691 2 555.8007202148438 MULTI HCD FTMS 0 0 0 6702 31365.861328125 0.8301959800273077 -3 0.06947708129882812 7 Unmodified _VYHHLVETL_ ENSG00000099998|ENST00000327365|GGT5;GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;nc|ENSG00000099998|P36269-2|GGT5;nc|ENSG00000099998|P36269-3|GGT5 26.88365393820708 0.12808753336095696 2 VET{I|L} 4 5 41.186 0 0 3.7118 0 0 649.3301869123062 0 649.3301869123062 0 35.70107520596089 0 0 0 0.9247425010840047 0 0 0 + VET{I|L} 3.7118 + + 16 NaN NaN 98523.5 NaN 4442 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6710 38.484 NaN 48733 35 0 6282.5 0.263 + 16412 LSKILRAKKHK 11 30 441.29757465645827 NaN 0 441.29766845703125 PEAK HCD FTMS 0 0 0 6702 18441.86328125 0.4735481609915518 470 -12.091373443603516 8 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 N 1 11 6.9897 0 0 0.79376 0 0 182.18284354944154 581.3441866510374 763.527030200479 0 0 0 0 0 0 0 0 0 N 0.79376 - 3 + NaN NaN 86991.8 NaN 4443 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6711 38.487 NaN 87190 35 0 12097 0.261 + -1 PHCTILFTN 9 35 551.7718886869717 NaN 0 551.7570190429688 PEAK HCD FTMS 0 0 0 6702 2662.474853515625 0.4512816020317133 1 -0.0398406982421875 9 Carbamidomethyl (C) _PHC(Carbamidomethyl (C))TILFTN_ REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF 7.910154910731844 0.25691533546754686 2 TT 2 -1 13.583 0 0 1.2331 0 0 132.07135198156203 764.3412569635374 896.4126089450995 0 0 0 0 0 0 0 0.5 0 TT 1.2331 - 4 + NaN NaN 101385.5 NaN 4444 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6712 38.49 NaN 14379 35 0 6968 0.261 + -1 CDTYQRYVV 9 11 602.2762451171875 NaN 0 602.2762451171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))DTYQRYVV_ REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89014.5 NaN 4445 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6713 38.494 NaN 12967 35 0 4486.6 0.261 + 7275 FTFDAPYFVF 10 13 627.2974853515625 NaN 0 627.2974853515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _FTFDAPYFVF_ REV__tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80199.9 NaN 4446 2265 6702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6715 38.499 NaN 488740 35 0 193570 0.327 + 8942 HPDQAQAIL 9 50 496.7614487724925 991.508344611785 2 496.76171875 MULTI HCD FTMS 0 0 0 6714 224717.234375 0.99325566429583 -2 0.056369781494140625 1 Unmodified _HPDQAQAIL_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 27.628801355627647 0.12213550946336599 2 QA{I|L}{I|L} 4 5 45.138 0 0 4.5524 0 0 548.2355213849625 0 548.2355213849625 0 38.14810195828605 0 0 0 1.2887254899964358 0 0 0.3807196863200844 + QA{I|L}{I|L} 4.5524 + + 39 NaN NaN 161661.2 NaN 4447 2266 6714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6716 38.503 NaN 240840 35 0 31630 0.261 + 9312 HPQPGAVEL 9 41 474.25086307151 946.4871732098201 2 474.25054931640625 MULTI HCD FTMS 0 0 0 6714 147817.671875 0.4205892952299285 -4 0.10931777954101562 2 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 39.94969957227396 0.06557568441294001 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L} 8 2 + 51.916 0 0 5.4852 5.4852 88.431 0 0 0 11.593793813122062 41.45873464120562 11.593793813122062 9.262137858390815 0 1.7302046884880937 0 0.6989700043360187 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L} 5.4852;4.5066 -;- 68 NaN NaN 118278.4 NaN 4448 2266 6714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6717 38.507 NaN 82599 35 0 19718 0.261 + 24954 RYTERVDYL 9 25 405.5436591889532 1213.6091481670596 3 405.5439147949219 MULTI HCD FTMS 0 0 0 6714 29435.630859375 0.15428295677657214 10 -0.2593727111816406 3 Unmodified _RYTERVDYL_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 3.876331618118854 0.3216315731786804 2 Y{I|L} 2 7 24.776 0 0 2.0415 0 0 919.4498671016858 0 919.4498671016858 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 + Y{I|L} 2.0415 + + 8 NaN NaN 91290.8 NaN 4449 2266 6714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6718 38.51 NaN 99720 35 0 14951 0.261 -1 MSCFKSKTN 9 30 551.7544697558208 1101.4943865784414 2 551.7539672851562 MULTI HCD FTMS 0 0 0 6714 10806.1708984375 0.12149369074921365 25 -0.6465530395507812 4 Carbamidomethyl (C) _MSC(Carbamidomethyl (C))FKSKTN_ ENSG00000001460|ENST00000337248|STPG1;ENST00000497384.1_1_1:24696162-24710359:-|nuORF;nc|ENSG00000001460|Q5TH74-2|STPG1;nc|ENSG00000001460|Q5TH74-3|STPG1 5.731851221503515 0.3075653528928475 2 TT 2 -1 12.959 0 0 1.1765 0 0 132.034075231347 764.3407597573391 896.3748349886862 0 0 0 0 0 0 0 0.5 0 TT 1.1765 - 7 + NaN NaN 109892.3 NaN 4450 2266 6714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6719 38.513 NaN 42854 35 0 9170.6 0.261 -1 ECCSEWDCM 9 16 589.6682108343583 NaN 0 589.668212890625 PEAK HCD FTMS 0 0 0 6714 6568.05419921875 0.39079295842736583 4 -0.1203765869140625 5 Carbamidomethyl (C),Oxidation (M) _EC(Carbamidomethyl (C))CSEWDCM(Oxidation (M))_ chr1:1203960-1204399|494|10.57|0.55|4.27|-|ENST00000328596|TNFRSF18,TNFRSF18;ENSG00000186891|ENST00000379268|TNFRSF18;nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18;nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87806.4 NaN 4451 2266 6714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6720 38.517 NaN 48895 35 0 6129.3 0.261 + -1 MPLSSIWLE 9 36 546.2741189833444 1090.5336850334886 2 546.274658203125 MULTI HCD FTMS 0 0 0 6714 4449.96240234375 0.28693482781497986 -5 0.135833740234375 6 Oxidation (M) _M(Oxidation (M))PLSSIWLE_ REV__ENSG00000117595|ENST00000367021|IRF6;REV__nc|ENSG00000117595|O14896-2|IRF6 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.3649 0 0 463.23743366805735 477.2001131647094 940.4375468327668 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.3649 + + 2 + NaN NaN 105396.6 NaN 4452 2266 6714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6722 38.522 NaN 593830 35 0 55903 0.327 + 207 AETVRYSMCT 10 79 580.7568288503979 1159.4991047675958 2 580.7573852539062 MULTI HCD FTMS 0 0 0 6721 296574.34375 0.19711976119593452 7 -0.19990158081054688 1 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 17.11289562659939 0.35104376501799556 2 [YR]{I|L}EGTS 7 8 58.945 0 0 5.0836 0 0 0 350.0846148258383 350.0846148258383 13.41801620289715 0 0 0 0 2.4247425010840047 0 0.7742275032520141 0 [YR]{I|L}EGTS 5.0836 - 384 NaN NaN 175757.4 NaN 4453 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6723 38.526 NaN 247770 35 0 41557 0.262 + 792 ATAGIIGVNR 10 44 486.28518083953384 970.5558087458677 2 486.2852478027344 MULTI HCD FTMS 0 0 0 6721 114056.015625 0.7524878352910469 2 -0.052974700927734375 2 Unmodified _ATAGIIGVNR_ CLTC-VMP1|1|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;ENSG00000141367|ENST00000269122|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC 79.59630418116434 0.006214567534389808 2 [TA]AG{I|L}{I|L}GV[RN] 10 0 + 67.44 0 0 6.9486 6.9486 86.53 0 0 0 2.2095438718280036 2.2095438718280036 2.2095438718280036 2.2095438718280036 0 2.504432191740108 0 0 0 + + [TA]AG{I|L}{I|L}GV[RN];[TA]Q{I|L}{I|L}GV[RN];[TA][AG]{I|L}{I|L}GV[RN];[TA][KS][VP]V[RN] 6.9486;6.7209;5.7722;0.97133 +;-;+;- + 160 + NaN NaN 133699.5 NaN 4454 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6724 38.53 NaN 185790 35 0 18271 0.261 + 27752 TATKIEITM 9 53 512.2731389515716 1022.5317249699432 2 512.2730102539062 MULTI HCD FTMS 0 0 0 6721 99595.984375 0.673347844389783 -7 0.1854705810546875 3 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 76.82478488871298 0.006879825292024087 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 76.788 0 0 7.5096 7.5096 95.242 0 0 0 15.56810945375765 15.56810945375765 15.56810945375765 35.59486304567815 0 2.1549471895720984 0.958607314841775 1.1549471895720984 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 7.5096;4.0285 +;- + 70 + NaN NaN 126815.5 NaN 4455 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6725 38.533 NaN 137720 35 0 14863 0.261 + 8970 HPDYGSHIQAL 11 36 619.3017814639649 1236.5890099947296 2 619.3016967773438 MULTI HCD FTMS 0 0 0 6721 71992.4921875 1 0 0 4 Unmodified _HPDYGSHIQAL_ ENSG00000121691|ENST00000241052|CAT 55.23464941255904 0.05992270572966781 2 {I|L}QA{I|L} 4 7 33.175 0 0 2.6828 0 0 793.3151112287125 0 793.3151112287125 0 4.190840781556204 0 0 0 0.4247425010840047 0 0 0 + {I|L}QA{I|L} 2.6828 + + 27 NaN NaN 112565.5 NaN 4456 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6726 38.537 NaN 129770 35 0 37396 0.261 -1 0 30 538.1608788264049 537.1536023598048 1 538.1615600585938 MULTI HCD FTMS 0 0 0 6721 50704.6171875 0.567243317934893 540 -13.890533447265625 5 NaN NaN 2 T 1 -1 0.088644 0 0 0.016503 0 0 251.1931969416392 181.8854158990844 433.0786128407236 0 0 0 0 0 0 0 0 0 T 0.016503 - 3 + NaN NaN 123502.8 NaN 4457 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6727 38.54 NaN 453520 35 0 44862 0.261 + 31598 VYIKHPVSL 9 54 528.3159559173213 1054.6173589014425 2 528.3160400390625 MULTI HCD FTMS 0 0 0 6721 108342.0390625 0.08125844648834683 -6 0.15900802612304688 6 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 79.59630418116434 0.005983006570063981 2 VY{I|L}KHPVS{I|L} 9 0 + 87.488 0 0 8.2957 8.2957 94.719 0 0 0 15.421656121837657 15.421656121837657 15.421656121837657 15.421656121837657 0 2.584121882396211 1.6989700043360187 1.055462187404089 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};{I|L}[YV]KHPVS{I|L};[VP][HK]{I|L}YVS{I|L};[K{I|L}][YV]HPVS{I|L};[KP][HV]{I|L}YVS{I|L};[VP][HK]{I|L}S[YV]{I|L};[VP]S[H{I|L}]K[YV]{I|L};[VP]S[HK]{I|L}[YV]{I|L};[VP][HK]S{I|L}[YV]{I|L} 8.2957;6.8334;4.6643;3.2775;2.4963;1.6031;1.4991;1.3806;1.0467;1.0467 +;+;-;-;-;-;-;-;-;- + 505 + NaN NaN 164332.2 NaN 4458 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6728 38.543 NaN 70126 35 0 5451.3 0.261 + -1 HPVSRETMIS 10 32 586.7884486611517 NaN 0 586.7884521484375 PEAK HCD FTMS 0 0 0 6721 35880.04296875 0.9753431299208272 1 -0.036449432373046875 7 Oxidation (M) _HPVSRETM(Oxidation (M))IS_ REV__ENSG00000182718|ENST00000451270|ANXA2;REV__nc|ENSG00000182718|P07355-2|ANXA2;REV__nc|ENSG00000231991|A6NMY6|ANXA2P2;REV__RORA-ANXA2|1|fusion;REV__RORA-ANXA2|2|fusion 8.155526934196011 0.33320428830121973 2 PV 2 -1 11.198 0 0 0.95581 0 0 137.05816727557232 835.3606661432249 972.4188334187972 0 0 0 0 0 0.5 0 0 0 PV 0.95581 + + 7 + NaN NaN 95584.6 NaN 4459 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6729 38.547 NaN 142070 35 0 29384 0.261 + 23538 RNSQWVPTL 9 29 550.7959685998555 1099.577384266511 2 551.2843627929688 MULTI HCD FTMS 0 0 0 6721 8972.15234375 0.03821976671620484 24 -0.6233787536621094 8 Unmodified _RNSQWVPTL_ ENSG00000099956|ENST00000644036|SMARCB1;ENST00000491967.1_1_22:24135798-24143581:+|nuORF;nc|ENSG00000099956|Q12824-2|SMARCB1 6.2057823575117 0.30397260197431997 2 A{I|L} 2 8 15.573 0 0 1.4163 0 0 897.4478847015853 0 897.4478847015853 0 1.9897000433601875 0 0 0 0 0 0 0 A{I|L} 1.4163 - 15 NaN NaN 104228.5 NaN 4460 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6730 38.55 NaN 71648 35 0 9488.5 0.261 + 30848 VQNEINNMSF 10 27 598.27379777614 1194.5330426190799 2 598.2744140625 MULTI HCD FTMS 0 0 0 6721 22048.00390625 0.3811706865036356 16 -0.4216499328613281 9 Unmodified _VQNEINNMSF_ ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000196218|P21817-2|RYR1;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000198626|Q92736-2|RYR2;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant 2.9952420565917617 0.4594494122822477 2 K 1 10 3.9794 0 0 0.33313 0 0 505.1467033630236 558.2677706354124 1063.414473998436 0 0 0 0 0 0 0 0 0 K 0.33313 - 13 + NaN NaN 98888.2 NaN 4461 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6731 38.553 NaN 49882 35 0 9446.4 0.261 + 1763 CLLPEDMLLT 10 24 574.2907273567691 1146.5669017803382 2 574.2910766601562 MULTI HCD FTMS 0 0 0 6721 20525.341796875 0.0050013223244041215 115 -2.940929412841797 10 Unmodified _CLLPEDMLLT_ REV__ENSG00000176177|ENST00000325157|ENTHD1 3.2813086475875832 0.45793521633868084 2 {I|L}T 2 -1 20.969 0 0 1.8289 0 0 914.4211292951187 0 914.4211292951187 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}T 1.8289 + + 1 NaN NaN 98589.2 NaN 4462 2267 6721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6733 38.558 NaN 159820 35 0 22876 0.326 + 17854 MIANDVHTL 9 45 515.2551237207967 1028.4956945083934 2 515.2551879882812 MULTI HCD FTMS 0 0 0 6732 77697.4453125 0.8355574065110861 -1 0.036449432373046875 1 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 66.45667989310934 0.010234776021261575 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDV 6 3 70.891 0 0 6.8927 0 0 0 366.1788729303344 366.1788729303344 63.90092514408778 0 0 0 0 1.6989700043360187 2 0.8494850021680094 0 + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDV 6.8927 + + 58 + NaN NaN 115107.3 NaN 4463 2268 6732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6734 38.563 NaN 71999 35 0 7816 0.261 + 30716 VPHDAPFAL 9 40 483.7570360955744 NaN 0 483.7480163574219 PEAK HCD FTMS 0 0 0 6732 2740.023681640625 1 0 0 2 Unmodified _VPHDAPFAL_ REV__nc|ENSG00000123179|Q9BY08-3|EBPL 10.823927491677226 0.2427956001690155 2 AE 2 -1 12.959 0 0 1.3422 0 0 131.1120203339238 631.2856539361936 762.3976742701175 0 0 0 0 0 0 0 0.3494850021680094 0 AE 1.3422 - 6 + NaN NaN 95714 NaN 4464 2268 6732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6735 38.566 NaN 40666 35 0 4560.7 0.261 -1 MPVGMTHGL 9 30 479.7277572374349 957.4409615416698 2 479.7274169921875 MULTI HCD FTMS 0 0 0 6732 10188.4208984375 0.4140005488820932 5 -0.14031982421875 3 Oxidation (M) _MPVGM(Oxidation (M))THGL_ ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4;TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant 7.289230182591677 0.29575926068275815 2 MPV 3 -1 24.425 0 0 2.551 0 0 0 627.2566012018186 627.2566012018186 17.43501263708417 0 0 0 0 0.4247425010840047 0 0 0 MPV 2.551 + + 5 + NaN NaN 96098.7 NaN 4465 2268 6732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6736 38.57 NaN 32015 35 0 7814.2 0.261 + -1 YLRRARLM 8 29 547.8164078526206 NaN 0 547.7260131835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YLRRARLM(Oxidation (M))_ REV__ENSG00000136487|ENST00000423893|GH2;REV__nc|ENSG00000136487|P01242-2|GH2;REV__nc|ENSG00000136487|P01242-3|GH2;REV__nc|ENSG00000136487|P01242-4|GH2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88497.2 NaN 4466 2268 6732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6738 38.575 NaN 310980 35 0 27873 0.327 + 683 APVETEPKL 9 58 492.27448731804503 982.5344217028901 2 492.2740173339844 MULTI HCD FTMS 0 0 0 6737 175919.515625 0.813948263022389 2 -0.0708465576171875 1 Unmodified _APVETEPKL_ ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B 79.59630418116434 0.005983006570063981 2 APVE{[ET]|[MV]}PK{I|L} 9 0 + 77.673 0 0 7.9053 7.9053 93.003 0 0 0 52.315534464597704 5.999161495794425 5.999161495794425 10.778324880759484 0 2.4291746928241125 1.5228787452803376 0.7059771852360797 0 + + APVE{[ET]|[MV]}PK{I|L};[PA]VE{[ET]|[MV]}PK{I|L};[VP]AE{[ET]|[MV]}PK{I|L};{NN|[MP]|[D{I|L}]|[EV]}PA{[ET]|[MV]}PK{I|L};[VP]EA{[ET]|[MV]}PK{I|L};{NN|[MP]|[D{I|L}]|[EV]}P{[ET]|[MV]}APK{I|L};[VP]E{[ET]|[MV]}APK{I|L};{I|L}[PG]E{[ET]|[MV]}PK{I|L};[PA]V[YR][HQ]{I|L};[VP]A[YR][HQ]{I|L} 7.9053;6.8084;5.2817;5.0792;4.5936;4.4677;3.9821;3.8601;3.4696;1.943 +;+;-;-;-;-;-;-;-;- + 279 + NaN NaN 138363.5 NaN 4467 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6739 38.579 NaN 361050 35 0 98174 0.261 + 10432 IPCEEGDKL 9 61 502.24194122168706 1002.4693295101741 2 502.2419128417969 MULTI HCD FTMS 0 0 0 6737 220436.859375 0.8230808095246152 -2 0.052974700927734375 2 Unmodified _IPCEEGDKL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 59.368380827593164 0.01846506874148156 2 {I|L}PCEE[DG]K{I|L} 9 0 + 81.99 0 0 8.1788 8.1788 93.771 0 0 0 67.35863111416478 4.070677831939307 4.070677831939307 12.073259432077563 0 2.1549471895720984 1.6989700043360187 1.110924374808178 0 + + {I|L}PCEE[DG]K{I|L};{I|L}PCEE[{I|L}T][QA];[{I|L}P]CEE[DG]K{I|L};{[CP]|[EA]}E{I|L}E[DG]K{I|L};{[CP]|[EA]}EE{I|L}[DG]K{I|L};{[CP]|[EA]}EE[DG]{I|L}K{I|L};{[CP]|[EA]}EE[DG]K{I|L}{I|L} 8.1788;6.9745;5.7245;3.632;2.2324;1.8526;1.1725 +;-;+;-;-;-;- + 132 + NaN NaN 146992.9 NaN 4468 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6740 38.583 NaN 408910 35 0 66619 0.262 -1 VYTRHMTWI 9 48 408.20617877439923 1221.5967069233977 3 408.20611572265625 MULTI HCD FTMS 0 0 0 6737 165727.875 0.9439849725439742 -1 0.0165252685546875 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 27.223235318498237 0.1251536255799991 2 VY 2 -1 42.206 0 0 3.455 0 0 0 956.4405404917329 956.4405404917329 13.737125054200234 0 0 0 0 0.4247425010840047 2 0 0 VY 3.455 + + 23 + NaN NaN 157006.4 NaN 4469 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6741 38.586 NaN 78562 35 0 11003 0.261 + 27703 TANQDGRVIL 10 29 543.7985145153913 1085.5824760975825 2 543.79931640625 MULTI HCD FTMS 0 0 0 6737 20059.109375 0.12503143357965313 6 -0.16672897338867188 4 Unmodified _TANQDGRVIL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 13.614867670302875 0.3837631382804675 2 R{I|L}{I|L} 3 7 34.253 0 0 3.1552 0 0 685.3055897443375 0 685.3055897443375 0 28.767959391884546 0 0 0 0 0 0 0.805462187404089 R{I|L}{I|L} 3.1552 - 25 NaN NaN 103550.3 NaN 4470 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6742 38.59 NaN 111200 35 0 13906 0.262 + 16073 LPSPVQSLA 9 29 456.2634495607146 910.5123461882292 2 456.26348876953125 MULTI HCD FTMS 0 0 0 6737 68639.5625 0.14753735090285322 -8 0.21198272705078125 5 Unmodified _LPSPVQSLA_ REV__ENSG00000158555|ENST00000336898|GDPD5;REV__GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant;REV__nc|ENSG00000158555|Q8WTR4-2|GDPD5;REV__nc|ENSG00000158555|Q8WTR4-3|GDPD5;REV__nc|ENSG00000158555|Q8WTR4-4|GDPD5;REV__nc|ENSG00000158555|Q8WTR4-5|GDPD5 24.990960013464015 0.14443998892849796 2 {I|L}PSP 4 -1 61.414 0 0 6.745 0 0 0 513.2676485650999 513.2676485650999 61.414412723804546 0 0 0 0 1 1.5228787452803376 0.4247425010840047 0 {I|L}PSP 6.745 + + 14 + NaN NaN 93456.8 NaN 4471 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6743 38.597 NaN 76849 35 0 10550 0.261 + 15784 LPHDSGAALP 10 36 489.25694732295705 976.4993417127141 2 489.25604248046875 MULTI HCD FTMS 0 0 0 6737 28803.716796875 0.6764562716462522 -1 0.0165252685546875 6 Unmodified _LPHDSGAALP_ REV__ENSG00000099364|ENST00000338343|FBXL19;REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19;REV__nc|ENSG00000099364|Q6PCT2-3|FBXL19;REV__nc|ENSG00000099364|Q6PCT2|FBXL19 10.073929032068715 0.4168838835836452 2 {I|L}W{I|L} 3 -1 28.188 0 0 2.8866 0 0 0 561.2038668268186 561.2038668268186 23.58349385648225 0 0 0 0 0.5 0 0 0 {I|L}W{I|L} 2.8866 - 17 + NaN NaN 98763.3 NaN 4472 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6744 38.601 NaN 43449 35 0 5165 0.261 + 13349 KYMEDYHQF 9 23 630.7711038550601 1259.5276547769201 2 630.7713012695312 MULTI HCD FTMS 0 0 0 6737 25052.830078125 0.8687770365774258 1 -0.04422760009765625 7 Unmodified _KYMEDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 5.047519993296601 0.31275309318234606 2 Q{M(Oxidation (M))|F} 2 7 20.969 0 0 1.6648 0 0 966.3864569432694 0 966.3864569432694 0 20.969100130080562 0 0 0 0 0 0 0 + Q{M(Oxidation (M))|F} 1.6648 + + 5 NaN NaN 93279.8 NaN 4473 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6745 38.604 NaN 55980 35 0 7295.7 0.264 + -1 VPCPVCAL 8 23 458.2245429099011 914.4345328866023 2 458.2242431640625 MULTI HCD FTMS 0 0 0 6737 27602.28515625 0.6779793635239574 4 -0.1237945556640625 8 2 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))PVC(Carbamidomethyl (C))AL_ REV__ENSG00000042832|ENST00000220616|TG;REV__nc|ENSG00000042832|P01266-2|TG;REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant 6.354104778181461 0.5325651638111438 2 A{I|L} 2 -1 25.217 0 0 2.7576 0 0 712.3023548810562 0 712.3023548810562 0 0.7795501485934864 0 0 0 0.4247425010840047 0 0 0 A{I|L} 2.7576 + + 5 NaN NaN 100584 NaN 4474 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6746 38.607 NaN 24972 35 0 4709.2 0.261 -1 SRFMDLDELQ 10 21 635.2908320082919 1268.5671110833837 2 635.7930297851562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _SRFM(Oxidation (M))DLDELQ_ ENSG00000166348|ENST00000687698|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-6|USP54;nc|ENSG00000166348|Q70EL1-7|USP54 5.731851221503515 0.44496410492002586 2 {I|L} 1 -1 5.4846 0 0 0.43234 0 0 670.2718362804525 482.1889742486938 1152.4608105291463 0 0 0 0 0 0 0 0 0 {I|L} 0.43234 + + 2 + NaN NaN 98749.9 NaN 4475 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6747 38.611 NaN 40032 35 0 5284.1 0.262 -1 MGSLICFIC 9 31 530.2366627166961 1058.458772500192 2 531.2396240234375 MULTI HCD FTMS 0 0 0 6737 15432.0400390625 0.5001271965054667 -9 0.23844528198242188 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))GSLIC(Carbamidomethyl (C))FIC_ ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10 0.6014990680409731 0.3464572424761564 2 Q 1 -1 5.4846 0 0 0.51816 0 0 163.0407869768922 764.3342989557249 927.3750859326171 0 0 0 0 0 0 0 0 0 Q 0.51816 - 3 + NaN NaN 86491.5 NaN 4476 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6748 38.614 NaN 20742 35 0 3547.8 0.261 + 33069 YDIHWMIR 8 16 567.2836673130506 1132.5527816929011 2 567.2838134765625 MULTI HCD FTMS 0 0 0 6737 11087.2685546875 0.9636224425099996 1 -0.04422760009765625 11 Unmodified _YDIHWMIR_ REV__ENSG00000181291|ENST00000631683|TMEM132E;REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant;REV__TMEM132E|p.V544Wfs*31|1|0.24|ENSG00000181291|chr17:34635008-34635008|G/-|frameshift_variant 4.75600775471527 0.5349361699807423 2 H 1 -1 10.485 0 0 0.92574 0 0 391.1741939016886 601.2880953424436 992.4622892441323 0 0 0 0 0 0.5 0 0 0 H 0.92574 + + 1 + NaN NaN 86634.2 NaN 4477 2269 6737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6750 38.619 NaN 1026100 35 0 107840 0.327 + 9466 HPVSREWTL 9 80 562.7957071357245 1123.5768613382488 2 562.7960815429688 MULTI HCD FTMS 0 0 0 6749 576673.1875 0.5165001457678292 4 -0.10269927978515625 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 61.60191391372663 0.015340508911304802 2 HPV{I|L}[QA]T 7 5 41.96 0 0 3.7345 0 0 0 374.1667879693969 374.1667879693969 1.7780111518825805 0 0 0 0 0.7887254899964358 0 0.7742275032520141 0 HPV{I|L}[QA]T 3.7345 - 1442 + NaN NaN 240087.2 NaN 4478 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6751 38.624 NaN 145350 35 0 17468 0.261 + 9330 HPRTPYQEL 9 31 570.7934119210873 1139.5722709089746 2 570.7935791015625 MULTI HCD FTMS 0 0 0 6749 93977.1875 0.6834104231526026 4 -0.10269927978515625 2 Unmodified _HPRTPYQEL_ REV__ENSG00000138382|ENST00000260953|METTL5;REV__ENST00000471560.1_1_2:170680960-170681107:-|nuORF 10.799506525563784 0.2670509983294061 2 HPV 3 -1 31.198 0 0 2.7377 0 0 0 803.3689947885064 803.3689947885064 26.593793813122062 0 0 0 0 0.5 0 0 0 HPV 2.7377 - 11 + NaN NaN 100876.9 NaN 4479 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6752 38.627 NaN 119610 35 0 6245.9 0.264 + 13350 KYMEDYHQF 9 58 420.8498100012772 1259.5276006040317 3 420.8498229980469 MULTI HCD FTMS 0 0 0 6749 65944.3984375 1 0 0 3 Unmodified _KYMEDYHQF_ ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant 23.80106514851385 0.15472041655325736 2 [NP][NP]EDY[HQ]{M(Oxidation (M))|F} 10 4 [NP][NP]E + + 36 3.4679 0.62911 2.8582 2.8582 60.032 0 0 0 0 29.010234424404686 0 0 0 1.4247425010840047 0 0 0.7059771852360797 [NP][NP]EDY[HQ]{M(Oxidation (M))|F} 2.8582 - 29 + NaN NaN 116072.6 NaN 4480 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6753 38.631 NaN 119820 35 0 21660 0.261 + 6958 FPVRDGKIKL 10 36 586.8610464491501 1171.7075399651 2 586.8612060546875 MULTI HCD FTMS 0 0 0 6749 62042.1484375 0.8141106936593661 -2 0.06075286865234375 4 Unmodified _FPVRDGKIKL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 13.614867670302875 0.3837631382804675 2 P[KG]{I|L}K{I|L} 6 4 35.278 0 0 3.0108 0 0 517.251756736525 0 517.251756736525 0 29.79364375124895 0 0 0 0.9247425010840047 0 0 0 P[KG]{I|L}K{I|L} 3.0108 - 28 NaN NaN 104087.5 NaN 4481 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6754 38.634 NaN 133610 35 0 17850 0.262 + 33548 YIKHPVSL 8 45 478.78189513885656 955.5492373445131 2 478.7815246582031 MULTI HCD FTMS 0 0 0 6749 44097.5234375 0.710582639864316 -3 0.09720230102539062 5 Unmodified _YIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 54.773552608820026 0.09821516306421259 2 Y{I|L}KH[VP]{[TV]|[{I|L}S]} 8 0 + 69.377 0 0 7.2604 7.2604 94.806 0 0 0 66.90257377045383 15.404601657931906 15.404601657931906 35.802958423838035 0 1.305462187404089 2 0.9947026752325154 0 + + Y{I|L}KH[VP]{[TV]|[{I|L}S]};[Y{I|L}]KH[VP]{[TV]|[{I|L}S]} 7.2604;3.5136 +;+ + 47 + NaN NaN 110981.6 NaN 4482 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6755 38.637 NaN 39816 35 0 4053.2 0.261 -1 HPVLKEMEVQ 10 27 613.3159231034261 1224.6172932736522 2 613.3159790039062 MULTI HCD FTMS 0 0 0 6749 23126.033203125 0.17134071651486327 24 -0.6022796630859375 6 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 2 V{[ES]|[DT]|[{I|L}C]} 3 -1 15.458 0 0 1.2622 0 0 891.43852431465 0 891.43852431465 0 15.45757490560675 0 0 0 0.5 0 0 0 V{[ES]|[DT]|[{I|L}C]} 1.2622 - 2 NaN NaN 92393.3 NaN 4483 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6756 38.641 NaN 59222 35 0 8160.3 0.264 + -1 VPCPVCAL 8 34 458.2245429099011 914.4345328866023 2 458.2240295410156 MULTI HCD FTMS 0 0 0 6749 13401.72265625 0.32917895548048876 5 -0.12250137329101562 7 2 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))PVC(Carbamidomethyl (C))AL_ REV__ENSG00000042832|ENST00000220616|TG;REV__nc|ENSG00000042832|P01266-2|TG;REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant 6.354104778181461 0.5325651638111438 2 A{I|L} 2 -1 24.776 0 0 2.7095 0 0 712.3033314435562 0 712.3033314435562 0 24.776296993281406 0 0 0 0.3807196863200844 0 0 0 A{I|L} 2.7095 + + 3 NaN NaN 93969 NaN 4484 2270 6749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6758 38.646 NaN 470130 35 0 63019 0.327 + 9313 HPQPGAVEL 9 45 474.25086307151 946.4871732098201 2 474.2508239746094 MULTI HCD FTMS 0 0 0 6757 293265.59375 0.8344358818937664 1 -0.026477813720703125 1 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 45.69961567697781 0.039180348357221985 2 {[QN]|[E{I|L}]|[KN]}HHAVE{I|L} 8 4 + 46.688 0 0 4.9327 4.9327 84.13 0 0 0 0.3571210547853809 36.56295947543775 0.3571210547853809 4.613722171227863 0 0.8494850021680094 0 0.5796896906561032 0 {[QN]|[E{I|L}]|[KN]}HHAVE{I|L};[QP]H[PG]AVE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}AVE{I|L};[QP]H[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]QQE{I|L};{[QN]|[E{I|L}]|[KN]}[NP]{I|L}H[QP];{[QN]|[E{I|L}]|[KN]}[NP][KS]{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[QP]{I|L}H[QP] 4.9327;4.4453;4.2696;4.0789;4.0129;3.0343;1.2421;1.073;1.0488;0.19364 -;-;-;-;-;-;-;-;-;- 128 NaN NaN 158583.9 NaN 4485 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6759 38.65 NaN 253510 35 0 103910 0.261 + 8943 HPDQAQAIL 9 29 496.7614487724925 991.508344611785 2 496.7617492675781 MULTI HCD FTMS 0 0 0 6757 102624.7265625 0.4536037978507355 3 -0.076080322265625 2 Unmodified _HPDQAQAIL_ ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1 12.240655878213236 0.2545997876781172 2 A{I|L}{I|L} 3 6 35.005 0 0 3.5305 0 0 676.291608556043 0 676.291608556043 0 32.24087460279588 0 0 0 0.8807196863200843 0 0 0 + A{I|L}{I|L} 3.5305 + + 9 NaN NaN 113061.6 NaN 4486 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6760 38.654 NaN 152570 35 0 17672 0.261 + 23091 RENIHPYRKEL 11 52 485.600176038796 1453.778698716588 3 485.60009765625 MULTI HCD FTMS 0 0 0 6757 63216.64453125 0.8744332258518389 -1 0.02661895751953125 3 Unmodified _RENIHPYRKEL_ ENSG00000181544|ENST00000650831|FANCB 3.133959531975271 0.40517618462012517 2 YY 2 10 20.969 0 0 1.4424 0 0 0 1124.627121123311 1124.627121123311 0.8040747723590158 0 0 0 0 0 0 0 0 YY 1.4424 - 31 + NaN NaN 114260.9 NaN 4487 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6761 38.657 NaN 104640 35 0 37715 0.261 -1 0 33 441.7880015641994 881.5614501951989 2 441.7878723144531 MULTI HCD FTMS 0 0 0 6757 42918.77734375 0.760665138488017 -3 0.087371826171875 4 NaN NaN 2 N 1 -1 3.9794 0 0 0.4514 0 0 183.16413322553075 581.3413179986936 764.5054512242243 0 0 0 0 0 0 0 0 0 N 0.4514 - 1 + NaN NaN 101000.5 NaN 4488 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6762 38.66 NaN 138030 35 0 14869 0.261 -1 0 41 504.28551236611435 2013.1129435980574 4 504.2978515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 T 1 -1 1.5938 0 0 0.079171 0 0 1566.918010592001 342.1206453912719 1909.038655983273 0 0 0 0 0 0 0 0 0 T 0.079171 - 5 + NaN NaN 106221.3 NaN 4489 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6763 38.664 NaN 94646 35 0 14340 0.261 + 9927 IDFSLQSHGS 10 27 545.76180220852 1089.5090514838398 2 545.7620849609375 MULTI HCD FTMS 0 0 0 6757 26892.896484375 0.5497397820039469 -12 0.3325386047363281 6 Unmodified _IDFSLQSHGS_ REV__ENST00000377461.8_1_19:48718626-48735356:-|nuORF 10.799506525563784 0.4100970765206026 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 4 -1 20.247 0 0 1.8584 0 0 0 624.2739135519741 624.2739135519741 10.955612550363796 0 0 0 0 0.7059771852360797 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}S 1.8584 + + 15 + NaN NaN 89178.2 NaN 4490 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6764 38.667 NaN 69151 35 0 19458 0.261 + 19580 NTEIWDLRT 9 24 574.2907273567691 1146.5669017803382 2 574.2926025390625 MULTI HCD FTMS 0 0 0 6757 22437.763671875 0.0054673139903052715 119 -2.996978759765625 7 Unmodified _NTEIWDLRT_ ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 1.4819007175156935 0.3397831423917744 2 TK 2 8 13.271 0 0 1.1575 0 0 149.1054058879883 765.2896212213499 914.3950271093381 0 0 0 0 0 0 0 0.3807196863200844 0 TK 1.1575 - 3 + NaN NaN 111468.3 NaN 4491 2271 6757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6766 38.672 NaN 199050 35 0 21245 0.327 + 208 AETVRYSMCT 10 50 580.7568288503979 1159.4991047675958 2 580.75732421875 MULTI HCD FTMS 0 0 0 6765 119258.3671875 0.07926572664165955 12 -0.2945442199707031 1 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 12.240655878213236 0.39661705172222156 2 {I|L}STGE{I|L}{[MG]|[TS]}{I|L} 9 8 50.32 0 0 4.3398 0 0 240.024217674025 0 240.024217674025 0 31.380259698573028 0 0 0 2.4247425010840047 0 0.8807196863200843 0 {I|L}STGE{I|L}{[MG]|[TS]}{I|L} 4.3398 - 165 NaN NaN 113080.8 NaN 4492 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6767 38.677 NaN 319710 35 0 21971 0.261 + 27753 TATKIEITM 9 60 512.2731389515716 1022.5317249699432 2 512.273193359375 MULTI HCD FTMS 0 0 0 6765 138404.28125 0.9357227102963181 -2 0.053096771240234375 2 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 93.16586880292088 0.00444300900000894 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 65.736 0 0 6.4287 6.4287 90.811 0 0 0 5.734002963358407 5.734002963358407 5.734002963358407 12.450593636514142 0 2.3737125054200234 0 1.0114393726401687 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};[TA]T{[VA]|[{I|L}G]}VT{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}A{[VA]|[{I|L}G]}VT{I|L}T{M(Oxidation (M))|F} 6.4287;5.2111;4.9037;4.2468 +;-;-;- + 260 + NaN NaN 137687.2 NaN 4493 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6768 38.68 NaN 162270 35 0 41896 0.261 -1 0 42 433.0032107667975 1727.98373720079 4 432.88519287109375 MULTI HCD FTMS 0 0 0 6765 7261.361328125 0.26988448985037733 -31 0.8367843627929688 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 0.69385 0 0 1562.9047557328197 0 1562.9047557328197 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.69385 - 6 + NaN NaN 114200 NaN 4494 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6769 38.684 NaN 239480 35 0 19078 0.261 + 95 ADKMDMSL 8 55 492.7042973904869 983.3940418477738 2 492.7042541503906 MULTI HCD FTMS 0 0 0 6765 116211.6171875 0.6218492597716926 -32 0.8700180053710938 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 57.72198328787511 0.07996266466726457 2 {M(Oxidation (M))|F}S{I|L} 3 5 36.753 0 0 3.7373 0 0 618.2319203107437 0 618.2319203107437 0 20.652121138338586 0 0 0 0.8252574989159953 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.7373 + + 102 NaN NaN 115757.9 NaN 4495 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6770 38.687 NaN 50282 35 0 5456 0.261 + 8971 HPDYGSHIQAL 11 28 619.3017814639649 1236.5890099947296 2 619.3018188476562 MULTI HCD FTMS 0 0 0 6765 24578.912109375 0.3414093798192281 5 -0.11568069458007812 5 Unmodified _HPDYGSHIQAL_ ENSG00000121691|ENST00000241052|CAT 14.405379775768559 0.3315678654765638 2 Q[{I|L}A] 3 8 8.9524 0 0 0.72396 0 0 906.3981800763687 0 906.3981800763687 0 -2.016675202793719 -2.016675202793719 0 0 0 0 0 0 + Q[{I|L}A] 0.72396 + + 7 NaN NaN 97601.8 NaN 4496 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6771 38.69 NaN 75846 35 0 22931 0.261 + 18069 MMEVDPLVLT 10 16 574.2907273567691 1146.5669017803382 2 574.291015625 MULTI HCD FTMS 0 0 0 6765 17874.69921875 0.004355451574421726 120 -3.0196151733398438 6 Unmodified _MMEVDPLVLT_ ENSG00000183090|ENST00000329798|FREM3 6.2057823575117 0.44245551207394906 2 V{I|L}T 3 7 26.198 0 0 2.2849 0 0 815.3550378140746 0 815.3550378140746 0 19.20818753952375 0 0 0 0 0 0 0 + V{I|L}T 2.2849 + + 4 NaN NaN 97557.7 NaN 4497 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6772 38.694 NaN 62822 35 0 5757 0.261 + 23208 RFMYEYSI 8 40 554.7595163301985 NaN 0 554.775390625 PEAK HCD FTMS 0 0 0 6765 2583.28515625 0.43923131647070945 -1 0.026477813720703125 7 Unmodified _RFMYEYSI_ CON__ENSEMBL:ENSBTAP00000018229;CON__Q3MHN5 2.302733041254933 0.38822285293237185 2 D 1 8 5.4846 0 0 0.49522 0 0 150.16672445551563 839.2890108697874 989.4557353253031 0 0 0 0 0 0 0 0 0 D 0.49522 - 3 + NaN NaN 95035.7 NaN 4498 2272 6765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6774 38.699 NaN 2321200 35 0 239280 0.327 + 31599 VYIKHPVSL 9 77 528.3159559173213 1054.6173589014425 2 528.316162109375 MULTI HCD FTMS 0 0 0 6773 1333301.875 1 0 0 1 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 110.6747026088012 0.0028322563155251486 2 VY{I|L}KHPVS{I|L} 9 0 + 95.261 0 0 9.0328 9.0328 94.961 0 0 0 12.375729675490547 12.375729675490547 12.375729675490547 12.375729675490547 0 2.691962823435958 2 1.7249073637206092 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};[YV]{I|L}KHPSV{I|L};[YV]{I|L}KHPVTV;[YV]{I|L}KHPS{I|L}V;[VP]HK{I|L}YVS{I|L};{I|L}[YV]KHPVS{I|L};[VP]HK{I|L}YSV{I|L};[VP]HK{I|L}SYV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VK{I|L}YVS{I|L} 9.0328;7.8593;7.0459;6.7938;5.9804;5.4899;4.79;4.6765;4.5137;4.4733 +;+;-;-;-;-;-;-;-;- + 1006 + NaN NaN 439747.7 NaN 4499 2273 6773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6775 38.703 NaN 260810 35 0 56621 0.261 + 22013 QFRHTPTTL 9 48 550.7959685998555 1099.577384266511 2 551.2843627929688 MULTI HCD FTMS 0 0 0 6773 6209.7919921875 0.02645260492738868 29 -0.6999931335449219 2 Unmodified _QFRHTPTTL_ REV__ENSG00000184347|ENST00000519560|SLIT3;REV__nc|ENSG00000184347|O75094-2|SLIT3;REV__nc|ENSG00000184347|O75094-3|SLIT3;REV__nc|ENSG00000184347|O75094-4|SLIT3 4.3292370932331545 0.3181982124262546 2 TTTTMTT[{I|L}T] 9 -1 48.294 0 0 4.392 0 0 130.11903500128727 0 130.11903500128727 0 38.561603143133496 0 0 0 0 0 1.305462187404089 0 TTTTMTT[{I|L}T] 4.392 - 400 + NaN NaN 117879.2 NaN 4500 2273 6773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6776 38.707 NaN 56340 35 0 6212.9 0.261 -1 MIANDVHTL 9 40 515.2551237207967 1028.4956945083934 2 515.2554931640625 MULTI HCD FTMS 0 0 0 6773 17809.806640625 0.19152644964390436 4 -0.08921051025390625 3 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 20.453626601364224 0.18364154288633264 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A 3 -1 38.2 0 0 3.7141 0 0 0 694.3181856744749 694.3181856744749 22.715299873086607 0 0 0 0 0.9247425010840047 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A 3.7141 + + 12 + NaN NaN 104306.2 NaN 4501 2273 6773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6777 38.71 NaN 81832 35 0 11739 0.261 + 10808 ISVWTSER 8 33 489.25694732295705 976.4993417127141 2 489.2577209472656 MULTI HCD FTMS 0 0 0 6773 31815.078125 0.7471781951732934 3 -0.059429168701171875 4 Unmodified _ISVWTSER_ ENSG00000212127|ENST00000537503|TAS2R14 6.723162845929126 0.5320176132289695 2 {I|L}W 2 6 23.271 0 0 2.3831 0 0 0 674.2910250299436 674.2910250299436 5.735228231192405 0 0 0 0 0.3807196863200844 0 0 0 {I|L}W 2.3831 - 30 + NaN NaN 100240 NaN 4502 2273 6773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6778 38.713 NaN 18957 35 0 4062.4 0.261 -1 MEAFTLAFYI 10 17 624.3044958108553 1246.5944386885105 2 624.3043823242188 MULTI HCD FTMS 0 0 0 6773 12702.900390625 0.7217851002232535 -9 0.2563133239746094 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MEAFTLAFYI_ ENST00000373670.5_1_9:125611733-125611871:-|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93721.4 NaN 4503 2273 6773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6779 38.717 NaN 11310 35 0 4520.1 0.261 + -1 DYFAIMNSLMG 11 10 639.2784423828125 NaN 0 639.2784423828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _DYFAIM(Oxidation (M))NSLMG_ REV__ENSG00000114573|ENST00000273398|ATP6V1A;REV__nc|ENSG00000114573|P38606-2|ATP6V1A 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92596.2 NaN 4504 2273 6773 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6781 38.722 NaN 570430 35 0 66837 0.327 + 16071 LPSPGEKAL 9 60 456.2634495607146 910.5123461882292 2 456.26348876953125 MULTI HCD FTMS 0 0 0 6780 383010.96875 0.8232631683238147 -3 0.076080322265625 1 Unmodified _LPSPGEKAL_ ENSG00000131746|ENST00000254051|TNS4 74.19965305603844 0.007729275404663812 2 {I|L}PSPGEKA{I|L} 9 0 + 91.666 0 0 10.067 10.067 97.546 0 0 0 55.22160958700539 6.751736484954378 6.751736484954378 25.48455006504028 0 2.110924374808178 1.5228787452803376 0.8494850021680094 0 + + {I|L}PSPGEKA{I|L};[{I|L}P]SN{[SA]|[TG]}{I|L}P{I|L};[PS]{I|L}N{[SA]|[TG]}{I|L}P{I|L};[{I|L}P]SGG{[SA]|[TG]}{I|L}P{I|L};[PS]{I|L}GG{[SA]|[TG]}{I|L}P{I|L};[{I|L}P]G[SG]{[SA]|[TG]}{I|L}P{I|L} 10.067;7.2686;6.5528;6.2572;5.5414;4.2419 +;-;-;-;-;- + 177 + NaN NaN 184604.5 NaN 4505 2274 6780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6782 38.726 NaN 312990 35 0 89582 0.261 + 10433 IPCEEGDKL 9 45 502.24194122168706 1002.4693295101741 2 502.24200439453125 MULTI HCD FTMS 0 0 0 6780 212496.59375 0.7934329535490067 3 -0.06607818603515625 2 Unmodified _IPCEEGDKL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 51.41523569358685 0.02959097413485123 2 {I|L}PCEE[DG]K{I|L} 9 0 + 81.705 0 0 8.1504 8.1504 90.077 0 0 0 33.46787486224656 6.00833760139686 6.00833760139686 6.00833760139686 0 2.1549471895720984 1.6989700043360187 0.7302046884880937 0 + + {I|L}PCEE[DG]K{I|L};{I|L}PCEE[QT]A{I|L};[{I|L}P]CEE[DG]K{I|L} 8.1504;7.551;5.8435 +;-;+ + 125 + NaN NaN 127277.1 NaN 4506 2274 6780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6783 38.73 NaN 346720 35 0 58097 0.262 -1 VYTRHMTWI 9 48 408.20617877439923 1221.5967069233977 3 408.2062072753906 MULTI HCD FTMS 0 0 0 6780 134334.96875 0.7651711686230478 4 -0.08924484252929688 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 18.373094154950223 0.20161688160436167 2 VY 2 -1 40.445 0 0 3.3109 0 0 0 956.4406066148366 956.4406066148366 17.728787452803374 0 0 0 0 0.4247425010840047 2 0 0 VY 3.3109 + + 10 + NaN NaN 126158.1 NaN 4507 2274 6780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6784 38.733 NaN 73589 35 0 12990 0.261 -1 RYLEKPMEI 9 31 597.8134483952368 NaN 0 597.8123779296875 PEAK HCD FTMS 0 0 0 6780 12018.3408203125 0.5913473772866288 3 -0.06607818603515625 4 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.27934607848455584 2 K 1 -1 7.4913 0 0 0.62762 0 0 504.2265639307221 558.2640474908811 1062.4906114216033 0 0 0 0 0 0.28872548999643577 0 0 0 K 0.62762 + + 6 + NaN NaN 101436 NaN 4508 2274 6780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6785 38.736 NaN 47449 35 0 6777.9 0.261 -1 LPYLPMLMD 9 34 554.7752877111755 1107.5360224891508 2 554.7726440429688 MULTI HCD FTMS 0 0 0 6780 11610.9111328125 0.5101920639584979 5 -0.11909866333007812 5 Oxidation (M) _LPYLPM(Oxidation (M))LMD_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 96669.9 NaN 4509 2274 6780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6787 38.742 NaN 79512 35 0 15715 0.327 + -1 CTEPPAQLH 9 31 526.7450242243153 1051.4754955154306 2 526.7454833984375 MULTI HCD FTMS 0 0 0 6786 17272.638671875 0.2725326747705846 7 -0.178802490234375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))TEPPAQLH_ REV__SYT15|p.S178P|1|0.33|ENSG00000204176|chr10:46582072-46582072|T/C|missense_variant 3.944395688203298 0.32111559684428237 2 {I|L}AR[YT] 5 -1 19.208 0 0 1.8268 0 0 429.1324912203118 0 429.1324912203118 0 3.7236374744834677 0 0 0 0 0 0 0 {I|L}AR[YT] 1.8268 - 21 + NaN NaN 115722.9 NaN 4510 2275 6786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6788 38.746 NaN 101200 35 0 10608 0.261 + -1 NIFEEKCQQ 9 33 598.27379777614 1194.5330426190799 2 598.2730102539062 MULTI HCD FTMS 0 0 0 6786 10276.4375 0.1776612864068081 24 -0.5951995849609375 2 Carbamidomethyl (C) _NIFEEKC(Carbamidomethyl (C))QQ_ REV__ENSG00000138303|ENST00000672957|ASCC1;REV__nc|ENSG00000138303|Q8N9N2|ASCC1 3.2813086475875832 0.32614229037259 2 MEH{M(Oxidation (M))|F} 4 -1 25.662 0 0 2.1483 0 0 0 647.2784517877561 647.2784517877561 18.672137691284405 0 0 0 0 0 0 0 0 MEH{M(Oxidation (M))|F} 2.1483 - 10 + NaN NaN 99724.8 NaN 4511 2275 6786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6789 38.75 NaN 19846 35 0 5505.9 0.261 -1 TPFNTREPVM 10 16 604.2922911413186 1206.5700293494372 2 604.2932739257812 MULTI HCD FTMS 0 0 0 6786 15229.3701171875 0.29944561697582045 -5 0.12250137329101562 3 Oxidation (M) _TPFNTREPVM(Oxidation (M))_ ENSG00000242574|ENST00000418107|HLA-DMB 6.1918466704503565 0.44252927588099017 2 T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N 4 -1 16.198 0 0 1.3425 0 0 0 744.3333223932249 744.3333223932249 16.197887582883936 0 0 0 0 0 0 0 0 T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N 1.3425 + + 2 + NaN NaN 83973.5 NaN 4512 2275 6786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6790 38.753 NaN 24151 35 0 4346.7 0.261 -1 NYEIMCMIR 9 25 631.2733154296875 NaN 0 631.2733154296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),2 Oxidation (M) _NYEIM(Oxidation (M))C(Carbamidomethyl (C))M(Oxidation (M))IR_ ENSG00000068796|ENST00000407818|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A 1.6526216038709556 0.28723846860855273 2 Y 1 -1 5.4846 0 0 0.43544 0 0 128.09667040839992 965.3648775690061 1093.461547977406 0 0 0 0 0 0 0 0 0 Y 0.43544 + + 1 + NaN NaN 95134.1 NaN 4513 2275 6786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6792 38.758 NaN 403320 35 0 43871 0.326 + 9467 HPVSREWTL 9 58 562.7957071357245 1123.5768613382488 2 562.7958374023438 MULTI HCD FTMS 0 0 0 6791 225389.578125 0.20187127211651754 10 -0.2749137878417969 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 34.93206674587334 0.08860942999206235 2 SVC{I|L} 4 7 39.157 0 0 3.485 0 0 703.3610096662125 0 703.3610096662125 0 16.49288766643714 0 0 0 0.5 0 0.7614393726401688 0 SVC{I|L} 3.485 - 231 NaN NaN 164819.3 NaN 4514 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6793 38.763 NaN 676130 35 0 55842 0.261 + 27421 SYTSVKENF 9 74 537.758375386899 1073.502197840598 2 537.7586059570312 MULTI HCD FTMS 0 0 0 6791 269498.03125 0.9189411087003175 -1 0.0164947509765625 2 Unmodified _SYTSVKENF_ ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B 80.6760300276096 0.005633624786464751 2 {[{M(Oxidation (M))|F}C]|[YS]}TSVKGEG{M(Oxidation (M))|F} 10 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 57.522 2.8432 1.1368 5.3584 5.3584 62.839 0 0 0 0 39.563506000068934 0 0 0 1.3667053245199625 0 0.9698565171985375 0 {[{M(Oxidation (M))|F}C]|[YS]}TSVKGEG{M(Oxidation (M))|F} 5.3584 - 646 + NaN NaN 180664.4 NaN 4515 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6794 38.766 NaN 190310 35 0 14922 0.261 + 21637 PYQGKKRC 8 50 490.2622042494716 NaN 0 490.2535400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PYQGKKRC_ ENSG00000165424|ENST00000372336|ZCCHC24;ENST00000372333.3_1_10:81146103-81203947:-|nuORF 13.50788311687929 0.38822285293237185 2 YAGQ 4 6 9.0288 0 0 0.92271 0 0 299.2023103090176 257.09275232486567 556.2950626338833 0 0 0 0 0 0.4247425010840047 0 0 0 YAGQ 0.92271 - 42 + NaN NaN 104307.8 NaN 4516 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6795 38.769 NaN 88466 35 0 20282 0.261 + 6959 FPVRDGKIKL 10 28 586.8610464491501 1171.7075399651 2 586.861328125 MULTI HCD FTMS 0 0 0 6791 47795.98046875 0.6271739421264875 4 -0.109344482421875 4 Unmodified _FPVRDGKIKL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 18.373094154950223 0.33925629317698053 2 P[KG]{I|L}K{I|L} 6 4 36.031 0 0 3.0751 0 0 517.24907118965 0 517.24907118965 0 30.546218740408904 0 0 0 1 0 0 0 P[KG]{I|L}K{I|L} 3.0751 - 11 NaN NaN 96759.4 NaN 4517 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6796 38.773 NaN 88161 35 0 10657 0.261 -1 MPTTERVTL 9 32 532.2761394980325 1062.537726062865 2 532.276123046875 MULTI HCD FTMS 0 0 0 6791 38478.7734375 0.8459973869200517 -4 0.08589935302734375 5 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 16.149105407346934 0.22083165093524068 2 TT[EP] 4 -1 21.682 0 0 2.0406 0 0 616.3527088849625 0 616.3527088849625 0 2.2184874961635614 0 0 0 0.5 0 0.5 0 TT[EP] 2.0406 - 17 NaN NaN 107834.2 NaN 4518 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6797 38.776 NaN 58088 35 0 6335.1 0.261 + 20836 PHVDEFLQR 9 31 570.7934119210873 1139.5722709089746 2 570.7929077148438 MULTI HCD FTMS 0 0 0 6791 32035.306640625 0.23296358456240152 10 -0.2749137878417969 6 Unmodified _PHVDEFLQR_ ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000144677|ENST00000273179|CTDSPL;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL 3.5964929083625545 0.32375295897743744 2 HPV 3 8 31.198 0 0 2.7377 0 0 0 803.3672773458438 803.3672773458438 25.713337517843655 0 0 0 0 0.5 0 0 0 HPV 2.7377 - 7 + NaN NaN 89664.4 NaN 4519 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6798 38.779 NaN 107560 35 0 12297 0.261 + -1 SADAWAVPFCA 11 30 597.7675062873972 NaN 0 597.7677612304688 PEAK HCD FTMS 0 0 0 6791 22675.794921875 0.7028234720378732 -2 0.036296844482421875 7 Carbamidomethyl (C) _SADAWAVPFC(Carbamidomethyl (C))A_ REV__ENST00000328703.11_1_1:154245065-154245200:+|nuORF 5.296884461304476 0.3270944076746277 2 D 1 -1 11.99 0 0 1.0046 0 0 158.0717251278209 917.400595945107 1075.472321072928 0 0 0 0 0 0.5 0 0 0 D 1.0046 + + 4 + NaN NaN 101058 NaN 4520 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6799 38.783 NaN 43725 35 0 6908.3 0.261 -1 QPDEEPMDM 9 34 554.202035921646 NaN 0 554.2015991210938 PEAK HCD FTMS 0 0 0 6791 8928.5166015625 0.627142305548214 -2 0.036296844482421875 8 Oxidation (M) _QPDEEPM(Oxidation (M))DM_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 5.296884461304476 0.2695788793730278 2 D 1 -1 6.9897 0 0 0.63176 0 0 149.04949839677903 839.2841280572874 988.3336264540665 0 0 0 0 0 0 0 0 0 D 0.63176 + + 2 + NaN NaN 90119.6 NaN 4521 2276 6791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6801 38.788 NaN 131660 35 0 14557 0.327 + 9314 HPQPGAVEL 9 35 474.25086307151 946.4871732098201 2 474.2508239746094 MULTI HCD FTMS 0 0 0 6800 66206.84375 0.1883799778402544 7 -0.178863525390625 1 Unmodified _HPQPGAVEL_ ENSG00000084774|ENST00000264705|CAD 32.78568957990786 0.09846250359632436 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L} 8 2 + 44.857 0 0 4.7393 4.7393 87.258 0 0 0 7.856668758921828 34.39896278884483 7.856668758921828 9.262137858390808 0 1.6989700043360187 0 0.3252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[QP]VE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][QP]VE{I|L} 4.7393;3.7607 -;- 68 NaN NaN 105434.1 NaN 4522 2277 6800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6802 38.792 NaN 251710 35 0 26017 0.261 + 10255 IIQSREPSL 9 46 521.7981815078778 1041.5818100825554 2 521.7982177734375 MULTI HCD FTMS 0 0 0 6800 86595.875 0.8568302942526063 -1 0.029781341552734375 2 Unmodified _IIQSREPSL_ BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;ENSG00000137948|ENST00000399546|BRDT;ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000137948|Q58F21-2|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4 49.52724829834842 0.03223213920720493 2 {I|L}{I|L}QSREPS{I|L} 9 0 + 69.333 0 0 6.6565 6.6565 89.661 0 0 0 25.642492736872597 64.72865638833312 25.642492736872597 9.208187539523749 0 1.9489700043360187 2 0 0 + + {I|L}{I|L}QSREPS{I|L};{I|L}{I|L}[AG]SREPS{I|L};{I|L}{I|L}QS{NN|[MP]|[D{I|L}]|[EV]}Q{I|L}{I|L};{I|L}{I|L}[AG]S{NN|[MP]|[D{I|L}]|[EV]}Q{I|L}{I|L};{I|L}{I|L}QS{NN|[MP]|[D{I|L}]|[EV]}[AG]{I|L}{I|L} 6.6565;5.7724;5.5794;4.6954;4.6954 +;-;-;-;- + 172 NaN NaN 123240.2 NaN 4523 2277 6800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6803 38.796 NaN 112770 35 0 37328 0.261 + 30500 VMDVMTAII 9 42 496.7614487724925 991.508344611785 2 496.76165771484375 MULTI HCD FTMS 0 0 0 6800 36705.30859375 0.16223836045271547 9 -0.2451324462890625 3 Unmodified _VMDVMTAII_ ENST00000399788.6_1_12:463300-463399:-|nuORF 3.944395688203298 0.32111559684428237 2 A{I|L}{I|L} 3 6 24.693 0 0 2.4904 0 0 676.2948475568375 0 676.2948475568375 0 22.21848749616356 0 0 0 0 0 0 0 + A{I|L}{I|L} 2.4904 + + 7 NaN NaN 99714.3 NaN 4524 2277 6800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6804 38.799 NaN 69398 35 0 9027.7 0.261 + 33549 YIKHPVSL 8 33 478.78189513885656 955.5492373445131 2 478.7818603515625 MULTI HCD FTMS 0 0 0 6800 29850.662109375 0.4810102842496482 4 -0.10934829711914062 4 Unmodified _YIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 16.942295170755138 0.46913822049235215 2 [Y{I|L}]R 3 6 30.458 0 0 3.1874 0 0 0 520.2678316705686 520.2678316705686 27.98332479720628 0 0 0 0 0 2 0 0 [Y{I|L}]R 3.1874 - 12 + NaN NaN 93637.6 NaN 4525 2277 6800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6805 38.803 NaN 139650 35 0 22728 0.261 + 4244 EVFSPPGSDR 10 36 545.76180220852 1089.5090514838398 2 545.7614135742188 MULTI HCD FTMS 0 0 0 6800 37083.40234375 0.7580522809159789 -6 0.14215850830078125 5 Unmodified _EVFSPPGSDR_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 18.373094154950223 0.33925629317698053 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SPN 6 5 29.235 0 0 2.6833 0 0 0 413.1842135065063 413.1842135065063 19.503231720496963 0 0 0 0 0.805462187404089 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SPN 2.6833 - 32 + NaN NaN 104180.3 NaN 4526 2277 6800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6806 38.806 NaN 44657 35 0 4241.5 0.261 -1 HPVLKEMEVQ 10 35 613.3159231034261 1224.6172932736522 2 613.3157958984375 MULTI HCD FTMS 0 0 0 6800 15692.359375 0.11626464752968982 31 -0.747772216796875 6 Oxidation (M) _HPVLKEM(Oxidation (M))EVQ_ ENSG00000114554|ENST00000393409|PLXNA1 2.9952420565917617 0.4594494122822477 2 HP 2 -1 25.969 0 0 2.1206 0 0 0 987.4819429986936 987.4819429986936 25.969100130080562 0 0 0 0 0.5 0 0 0 HP 2.1206 + + 2 + NaN NaN 87557.3 NaN 4527 2277 6800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6808 38.811 NaN 1301000 35 0 129810 0.327 + 18930 NAFKEITTM 9 78 535.7627861154677 1069.5110192977354 2 535.7631225585938 MULTI HCD FTMS 0 0 0 6807 595464.3125 0.39946025190983464 -3 0.0694427490234375 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 165.7202790778711 6.154960448002056E-09 2 {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 109.47 0 0 10.235 10.235 98.575 0 0 0 4.214374087343387 4.214374087343387 4.214374087343387 40.373767320247595 0 3.0994850021680094 1.5228787452803376 0.6989700043360187 1.4194451763165201 + + {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QGE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[AG]GE{I|L}TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L}EK[KG]{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F}{[QG]|[NA]} 10.235;6.4605;5.5995;2.0775;1.1413 +;-;-;-;- + 740 NaN NaN 279447.5 NaN 4528 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6809 38.816 NaN 196890 35 0 16646 0.261 + 27754 TATKIEITM 9 47 512.2731389515716 1022.5317249699432 2 512.273193359375 MULTI HCD FTMS 0 0 0 6807 91900.6953125 0.6213215871595636 4 -0.1093597412109375 2 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 86.33184430468982 0.004622086694044132 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 71.647 0 0 7.0068 7.0068 93.864 0 0 0 6.544387449636204 6.544387449636204 6.544387449636204 28.53408749299639 0 2.079689690656103 1.3979400086720375 0.6747425010840047 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}AK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[Q{I|L}]{[TV]|[{I|L}S]}{I|L}T{M(Oxidation (M))|F};[KT][TA]{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 7.0068;4.2163;4.0492;3.7647 +;-;-;- + 134 + NaN NaN 122184 NaN 4529 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6810 38.819 NaN 130850 35 0 15722 0.261 + 209 AETVRYSMCT 10 46 580.7568288503979 1159.4991047675958 2 580.7573852539062 MULTI HCD FTMS 0 0 0 6807 69896.6171875 0.04645716926888978 18 -0.44994354248046875 3 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 8.155526934196011 0.43213520406898465 2 STGE 4 9 43.175 0 0 3.7236 0 0 353.1075907523294 429.22580896549067 782.33339971782 0 0 0 0 0 1.6989700043360187 0 0.4247425010840047 0 STGE 3.7236 - 28 + NaN NaN 121068.2 NaN 4530 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6811 38.822 NaN 25685 35 0 4400.7 0.263 -1 0 18 467.0997759001991 466.09249943359913 1 467.1019592285156 MULTI HCD FTMS 0 0 0 6807 38263.609375 0.5140870202668859 236 -6.1472930908203125 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89888.9 NaN 4531 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6812 38.826 NaN 62378 35 0 19954 0.261 -1 0 25 441.78801501187917 881.5614770905584 2 441.7879638671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 N 1 -1 3.9794 0 0 0.4514 0 0 183.16286976809585 581.3453463190061 764.508216087102 0 0 0 0 0 0 0 0 0 N 0.4514 - 1 + NaN NaN 95560.6 NaN 4532 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6813 38.829 NaN 173060 35 0 30773 0.261 + -1 SHISSLCPL 9 46 507.2558383714339 NaN 0 507.26666259765625 PEAK HCD FTMS 0 0 0 6807 6964.353515625 1 0 0 6 Carbamidomethyl (C) _SHISSLC(Carbamidomethyl (C))PL_ REV__ENST00000432700.5_1_22:36536658-36536868:-|nuORF 6.723162845929126 0.26266733336404485 2 ADA{I|L} 4 -1 15.433 0 0 1.5243 0 0 131.0733263836492 508.21515833072505 639.2884847143742 0 0 0 0 0 0 0 0 0 ADA{I|L} 1.5243 - 85 + NaN NaN 121336.7 NaN 4533 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6814 38.832 NaN 111970 35 0 19012 0.261 + 28847 TVIEREDGL 9 44 516.2720194582631 1030.5294859833261 2 516.2721557617188 MULTI HCD FTMS 0 0 0 6807 52325.06640625 0.8047283135240407 -2 0.052947998046875 7 Unmodified _TVIEREDGL_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 19.361941925380144 0.1930734562688509 2 S{I|L} 2 8 23.271 0 0 2.2582 0 0 812.4032629413641 0 812.4032629413641 0 11.281446971601312 0 0 0 0.3807196863200844 0 0 0 S{I|L} 2.2582 - 14 NaN NaN 99017.5 NaN 4534 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6815 38.836 NaN 72205 35 0 19916 0.261 -1 ESIQKAAKCI 10 21 574.3106131338517 1146.6066733345033 2 574.2916259765625 MULTI HCD FTMS 0 0 0 6807 5819.51611328125 0.4112186766855821 -2 0.052947998046875 8 Carbamidomethyl (C) _ESIQKAAKC(Carbamidomethyl (C))I_ ENSG00000121671|ENST00000616080|CRY2;nc|ENSG00000121671|Q49AN0-2|CRY2 2.9952420565917617 0.4594494122822477 2 T 1 -1 8.8515 0 0 0.77198 0 0 131.13533537735367 911.3960665338499 1042.5314019112036 0 0 0 0 0 0 0 0.4247425010840047 0 T 0.77198 - 7 + NaN NaN 98420.8 NaN 4535 2278 6807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6817 38.841 NaN 741760 35 0 77809 0.327 + 31600 VYIKHPVSL 9 63 528.3159559173213 1054.6173589014425 2 528.3161010742188 MULTI HCD FTMS 0 0 0 6816 363407.78125 0.27256226670348005 6 -0.16229248046875 1 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 99.75527289724121 0.004270341300239591 2 VY{I|L}KHPVS{I|L} 9 0 + 95.301 0 0 9.0365 9.0365 94.636 0 0 0 11.205065448681921 11.205065448681921 11.205065448681921 11.205065448681921 0 2.7034021960761265 2 1.416386562212267 0 + + VY{I|L}KHPVS{I|L};[YV]{I|L}KHPVS{I|L};{I|L}[YV]KHPVS{I|L};[VP][HK]{I|L}YVS{I|L};[K{I|L}][YV]HPVS{I|L};[VP][KQ]{[RE]|[WV]}VS{I|L};[K{I|L}]H[YV]PVS{I|L};[VP][HK]{I|L}S[YV]{I|L};[VP]S[H{I|L}]K[YV]{I|L};[VP]SKH{I|L}[YV]{I|L} 9.0365;7.974;5.0725;3.8958;3.4064;2.8786;2.5284;2.3506;2.1837;2.1808 +;+;-;-;-;-;-;-;-;- + 484 + NaN NaN 205845.1 NaN 4536 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6818 38.845 NaN 263990 35 0 28430 0.261 + 96 ADKMDMSL 8 47 492.7042973904869 983.3940418477738 2 492.7043151855469 MULTI HCD FTMS 0 0 0 6816 169199.21875 0.9053863243627034 -25 0.680450439453125 2 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 55.50274090549119 0.09370106398411177 2 {M(Oxidation (M))|F}S{I|L} 3 5 35.49 0 0 3.6089 0 0 618.23051650215 0 618.23051650215 0 10.427965835756439 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.6089 + + 21 NaN NaN 120523.5 NaN 4537 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6819 38.849 NaN 445510 35 0 31430 0.261 + -1 YVRGLMCSL 9 70 529.261671913811 1056.508790894422 2 529.26171875 MULTI HCD FTMS 0 0 0 6816 100250.6015625 0.9559244162727872 2 -0.05632781982421875 3 Oxidation (M) _YVRGLM(Oxidation (M))CSL_ REV__nc|ENSG00000168967|Q16048|PMCHL1 7.289230182591677 0.29575926068275815 2 [YV]{I|L} 3 -1 24.437 0 0 2.313 0 0 0 678.2699983056442 678.2699983056442 5.307714691299523 0 0 0 0 0 1.6989700043360187 0 0 [YV]{I|L} 2.313 - 355 NaN NaN 151542.4 NaN 4538 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6820 38.852 NaN 230970 35 0 47326 0.261 + -1 YVMRTTTTI 9 38 551.2841345829398 1100.5537162326796 2 551.2841796875 MULTI HCD FTMS 0 0 0 6816 73559.8046875 0.6065257241455233 4 -0.10264968872070312 4 Oxidation (M) _YVM(Oxidation (M))RTTTTI_ REV__ENSG00000151150|ENST00000280772|ANK3 23.789781309258295 0.1548179064208189 2 MTTT{I|L} 5 -1 51.242 0 0 4.656 0 0 535.28422743965 0 535.28422743965 0 47.26280941356464 0 0 0 1.305462187404089 0 0.5 0 MTTT{I|L} 4.656 - 107 NaN NaN 118396 NaN 4539 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6821 38.856 NaN 279790 35 0 46030 0.261 + 19174 NIDTCSFNGPK 11 36 598.27379777614 1194.5330426190799 2 598.290771484375 MULTI HCD FTMS 0 0 0 6816 11262.9326171875 0.1947160285344731 28 -0.6650352478027344 5 Unmodified _NIDTCSFNGPK_ REV__ENSG00000174837|ENST00000312053|ADGRE1;REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF;REV__nc|ENSG00000174837|Q14246-2|ADGRE1;REV__nc|ENSG00000174837|Q14246-4|ADGRE1 2.735195868890462 0.4069250265843076 2 MEH{M(Oxidation (M))|F} 4 -1 35.433 0 0 2.9663 0 0 0 647.2802739306422 647.2802739306422 26.480625354554377 0 0 0 0 0 0 0.3494850021680094 0 MEH{M(Oxidation (M))|F} 2.9663 - 43 + NaN NaN 122749.4 NaN 4540 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6822 38.859 NaN 73160 35 0 13002 0.264 + 32324 VYVDVEVEDF 10 39 405.19275038980743 1212.5564217696224 3 405.192626953125 MULTI HCD FTMS 0 0 0 6816 8286.8583984375 0.36049950277940535 -5 0.11909866333007812 6 Unmodified _VYVDVEVEDF_ tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1 3.944395688203298 0.4544253912184634 2 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.8135 0 0 1047.4775928895426 0 1047.4775928895426 0 17.385606273598313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.8135 + + 3 + NaN NaN 86827.1 NaN 4541 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6823 38.862 NaN 38021 35 0 5794.5 0.261 + 35132 YVFDNWLQ 8 24 542.7575504086693 1083.5005478841385 2 542.7584228515625 MULTI HCD FTMS 0 0 0 6816 18227.45703125 0.8496273458059401 -4 0.09929656982421875 7 Unmodified _YVFDNWLQ_ ENSG00000008513|ENST00000522652|ST3GAL1 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97311.1 NaN 4542 2279 6816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6825 38.868 NaN 421050 35 0 58139 0.327 + 16072 LPSPGEKAL 9 43 456.2634495607146 910.5123461882292 2 456.2634582519531 MULTI HCD FTMS 0 0 0 6824 286528.6875 0.6158792680448899 3 -0.07610702514648438 1 Unmodified _LPSPGEKAL_ ENSG00000131746|ENST00000254051|TNS4 74.19965305603844 0.007729275404663812 2 {I|L}PSPGEKA{I|L} 9 0 + 97.604 0 0 10.72 10.72 97.328 0 0 0 57.26280941356464 13.46787486224656 13.46787486224656 19.65681882079494 0 2.1307196863200843 1.6989700043360187 0.8494850021680094 0 + + {I|L}PSPGEKA{I|L};[{I|L}P]SNAS{I|L}P{I|L};[{I|L}P]SGGAS{I|L}P{I|L};[PS]{I|L}NAS{I|L}P{I|L};[{I|L}P]SN{[TV]|[{I|L}S]}PA{I|L};[{I|L}P]SN{[TV]|[{I|L}S]}AP{I|L};[PS]{I|L}GGAS{I|L}P{I|L};[{I|L}P]SGG{[TV]|[{I|L}S]}PA{I|L};[PS]{I|L}N{[TV]|[{I|L}S]}PA{I|L};[{I|L}P]SGG{[TV]|[{I|L}S]}AP{I|L} 10.72;8.5608;7.5495;7.4741;7.4324;7.2686;6.4628;6.4211;6.3457;6.2572 +;-;-;-;-;-;-;-;-;- + 260 + NaN NaN 155871.4 NaN 4543 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6826 38.872 NaN 141550 35 0 38836 0.261 + 10434 IPCEEGDKL 9 37 502.24194122168706 1002.4693295101741 2 502.2419128417969 MULTI HCD FTMS 0 0 0 6824 84443.234375 0.31529938280428205 9 -0.2382354736328125 2 Unmodified _IPCEEGDKL_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 41.95555342248728 0.056367691549927025 2 {I|L}PCE 4 5 51.146 0 0 5.102 0 0 0 557.2573336236936 557.2573336236936 39.156687756324686 0 0 0 0 0.9247425010840047 1.2218487496163564 0.4247425010840047 0 + {I|L}PCE 5.102 + + 19 + NaN NaN 107536.5 NaN 4544 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6827 38.875 NaN 240690 35 0 37724 0.262 -1 VYTRHMTWI 9 42 408.20617877439923 1221.5967069233977 3 408.2061767578125 MULTI HCD FTMS 0 0 0 6824 112892.8046875 0.643036731951954 10 -0.25467681884765625 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 16.565877749689598 0.21723083036893404 2 VY 2 -1 41.766 0 0 3.419 0 0 0 956.4398477089757 956.4398477089757 16.549471895720984 0 0 0 0 0.3807196863200844 2 0 0 VY 3.419 + + 14 + NaN NaN 127910.2 NaN 4545 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6828 38.879 NaN 30895 35 0 5797.4 0.261 + 20837 PHVDEFLQR 9 20 570.7934119210873 1139.5722709089746 2 570.7943725585938 MULTI HCD FTMS 0 0 0 6824 9320.1572265625 0.06777700805372437 14 -0.3539390563964844 4 Unmodified _PHVDEFLQR_ ENSG00000144579|ENST00000273062|CTDSP1;ENSG00000144677|ENST00000273179|CTDSPL;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL 3.5964929083625545 0.32375295897743744 2 HPV 3 8 30.445 0 0 2.6716 0 0 0 803.3678387341348 803.3678387341348 30.445312593723983 0 0 0 0 0.4247425010840047 0 0 0 HPV 2.6716 - 4 + NaN NaN 104660.6 NaN 4546 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6829 38.882 NaN 57205 35 0 26979 0.261 + -1 VRQVDEQLC 9 17 573.7803113770142 NaN 0 573.7803344726562 PEAK HCD FTMS 0 0 0 6824 10743.45703125 0.43463172514103515 5 -0.13574981689453125 5 Carbamidomethyl (C) _VRQVDEQLC(Carbamidomethyl (C))_ REV__nc|ENSG00000293075|Q5TZK3|FAM74A4 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97886.3 NaN 4547 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6830 38.885 NaN 72704 35 0 11159 0.261 + 34814 YREMMFGL 8 32 523.7414694991458 NaN 0 523.7418212890625 PEAK HCD FTMS 0 0 0 6824 8490.640625 0.4484400150690092 -1 0.02654266357421875 6 Unmodified _YREMMFGL_ REV__ENST00000566942.1_1_1:111198432-111198462:-|nuORF 2.302733041254933 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.38063 0 0 745.4173848224526 149.99749170474846 895.414876527201 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.38063 + + 1 + NaN NaN 106290.9 NaN 4548 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6831 38.889 NaN 36300 35 0 6318.9 0.261 + -1 HCLAVFCL 8 20 481.733867347356 961.453181761512 2 481.71588134765625 MULTI HCD FTMS 0 0 0 6824 2961.978271484375 0.13389688662274166 21 -0.5084381103515625 7 Carbamidomethyl (C) _HCLAVFC(Carbamidomethyl (C))L_ REV__AP4B1|p.R301H|1|0.3|ENSG00000134262|chr1:113900116-113900116|C/T|missense_variant;REV__ENSG00000134262|ENST00000369569|AP4B1;REV__ENST00000479285.5_1_1:114438859-114442862:-|nuORF;REV__nc|ENSG00000134262|Q9Y6B7-2|AP4B1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99155.2 NaN 4549 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6832 38.892 NaN 15677 35 0 2272.4 0.261 + -1 SMIMRHRMK 9 16 619.3017814639649 1236.5890099947296 2 619.3005981445312 MULTI HCD FTMS 0 0 0 6824 7981.19140625 0.11086144073834088 13 -0.3308067321777344 8 3 Oxidation (M) _SM(Oxidation (M))IM(Oxidation (M))RHRM(Oxidation (M))K_ REV__tr|U7SY24|U7SY24_FUSNUAspartate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aspSPE=3SV=1 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87181.9 NaN 4550 2280 6824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6834 38.897 NaN 368220 35 0 23495 0.327 + 9468 HPVSREWTL 9 69 562.7957071357245 1123.5768613382488 2 562.7957763671875 MULTI HCD FTMS 0 0 0 6833 105976.609375 0.09491846573873837 15 -0.36376190185546875 1 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 24.990960013464015 0.14443998892849796 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VVTAGC{I|L} 9 7 41.181 0 0 3.6652 0 0 168.1263905255875 0 168.1263905255875 0 23.222281142179213 0 0 0 0.5 0 0.6505149978319906 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VVTAGC{I|L} 3.6652 - 270 NaN NaN 134933.2 NaN 4551 2281 6833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6835 38.902 NaN 306090 35 0 59295 0.261 + 22524 QSAPQLADAL 10 60 507.2666671396779 1012.5187813461558 2 507.782470703125 MULTI HCD FTMS 0 0 0 6833 38333.37890625 0.7831507601993362 1 -0.0231781005859375 2 Unmodified _QSAPQLADAL_ REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF 21.590151480376914 0.30916502439568466 2 {[QG]|[NA]}T[QP]{I|L}ADA{I|L} 10 -1 + 47.017 0 0 4.6436 4.6436 82.327 0 0 0 14.572034164243561 36.53266562845701 14.572034164243561 1.249387366082999 0 0.3054621874040891 0 0.3807196863200844 0.7302046884880937 {[QG]|[NA]}T[QP]{I|L}ADA{I|L};{[QG]|[NA]}T[QP]AD{I|L}A{I|L};{[QG]|[NA]}T[QP]A{I|L}DA{I|L};{[QG]|[NA]}T[QP]ADA{I|L}{I|L};{[QG]|[NA]}[QA][TP]D{I|L}A{I|L};{[QG]|[NA]}[QA][TP]{I|L}DA{I|L};{[QG]|[NA]}[QA][TP]DA{I|L}{I|L} 4.6436;4.5202;4.3463;4.0951;1.9401;1.7662;1.515 -;-;-;-;-;-;- 121 NaN NaN 125272.1 NaN 4552 2281 6833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6836 38.905 NaN 31958 35 0 4691.8 0.261 -1 TPFNTREPVM 10 23 604.2922911413186 1206.5700293494372 2 604.29248046875 MULTI HCD FTMS 0 0 0 6833 34121.8203125 0.6709160954912556 1 -0.0231781005859375 3 Oxidation (M) _TPFNTREPVM(Oxidation (M))_ ENSG00000242574|ENST00000418107|HLA-DMB 6.1918466704503565 0.44252927588099017 2 [TP]{M(Oxidation (M))|F}N 4 -1 13.188 0 0 1.093 0 0 0 744.3379000299436 744.3379000299436 6.197887582883936 0 0 0 0 0 0 0 0 [TP]{M(Oxidation (M))|F}N 1.093 + + 5 + NaN NaN 83389.6 NaN 4553 2281 6833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6837 38.909 NaN 151320 35 0 11204 0.263 -1 MPSPVSPKL 9 41 486.2650511189576 970.5155493047153 2 486.2651062011719 MULTI HCD FTMS 0 0 0 6833 43731.33984375 1 0 0 4 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 26.268140514670165 0.13340543277302316 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S[VP]S 6 -1 22.452 0 0 2.3134 0 0 0 353.21872888736567 353.21872888736567 8.47295930833134 0 0 0 0 1.579689690656103 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S[VP]S 2.3134 + + 61 + NaN NaN 109981.4 NaN 4554 2281 6833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6838 38.912 NaN 118270 35 0 20787 0.261 + 3145 EASARQGL 8 39 416.22110890282033 NaN 0 416.22802734375 PEAK HCD FTMS 0 0 0 6833 4123.6943359375 1 0 0 5 Unmodified _EASARQGL_ ENST00000597137.5_1_19:8428195-8436046:+|nuORF;ENST00000601886.1_1_19:8428195-8428702:+|nuORF 5.760428011301431 0.38822285293237185 2 A 1 7 6.9897 0 0 0.8417 0 0 185.05743889763443 571.3058565729124 756.3632954705467 0 0 0 0 0 0 0 0 0 + A 0.8417 + + 4 + NaN NaN 107338.7 NaN 4555 2281 6833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6839 38.915 NaN 36653 35 0 6665 0.261 -1 KMFRRGYI 8 32 543.7966735377456 1085.5787941422911 2 543.7953491210938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _KM(Oxidation (M))FRRGYI_ ENSG00000139977|ENST00000556492|NAA30;nc|ENSG00000139977|Q147X3-2|NAA30 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91393.7 NaN 4556 2281 6833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6841 38.921 NaN 464600 35 0 49767 0.327 + 34523 YPGQPHPAL 9 65 490.25345391007306 978.4923548869461 2 490.2534484863281 MULTI HCD FTMS 0 0 0 6840 206205.765625 0.8467496445455058 -1 0.0231781005859375 1 Unmodified _YPGQPHPAL_ ENSG00000114315|ENST00000232424|HES1 70.71552829651908 0.008856681705782516 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GQAYW 7 5 60.895 0 0 6.2234 0 0 0 110.06267372555024 110.06267372555024 36.7137967609372 0 0 0 0 1.4247425010840047 1.6989700043360187 0.4247425010840047 0.6694451763165201 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GQAYW 6.2234 - 398 NaN NaN 147764.4 NaN 4557 2282 6840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6842 38.925 NaN 80670 35 0 9846.1 0.261 -1 MPTTERVTL 9 28 532.2761394980325 1062.537726062865 2 532.2767333984375 MULTI HCD FTMS 0 0 0 6840 38435.890625 0.8450545619784586 2 -0.046337127685546875 2 Oxidation (M) _M(Oxidation (M))PTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 19.361941925380144 0.1930734562688509 2 TT[EP] 4 -1 23.188 0 0 2.1823 0 0 616.3526478498062 0 616.3526478498062 0 0.22878745280337398 0 0 0 0.5 0 0.5 0 TT[EP] 2.1823 - 11 NaN NaN 96155.9 NaN 4558 2282 6840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6843 38.928 NaN 230980 35 0 57530 0.261 + 19190 NIEGPDAKL 9 46 478.7560145821947 955.4974762311895 2 478.7559814453125 MULTI HCD FTMS 0 0 0 6840 106985.375 0.03253852198041917 -7 0.178802490234375 3 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 53.31671820480216 0.026930930319421505 2 {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 9 0 + 73.5 0 0 7.6924 7.6924 92.314 0 0 0 31.673013345680005 50.69673534980146 31.673013345680005 9.291746928241125 0 2.3494850021680094 2 0 0.6694451763165201 + + {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L} 7.6924;6.7199;5.7562 +;-;- + 103 NaN NaN 117177.5 NaN 4559 2282 6840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6844 38.932 NaN 108790 35 0 12328 0.261 + 23482 RLYGNPNTL 9 40 524.2827415192462 1046.5509301052923 2 524.2826538085938 MULTI HCD FTMS 0 0 0 6840 31157.1015625 1 0 0 4 Unmodified _RLYGNPNTL_ ENSG00000124659|ENST00000372876|TBCC;TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant 9.38312468134398 0.279288223203164 2 T{I|L} 2 7 19.464 0 0 1.8598 0 0 814.4085560529312 0 814.4085560529312 0 12.474250108400469 0 0 0 0 0 0 0 + T{I|L} 1.8598 + + 5 NaN NaN 119268.3 NaN 4560 2282 6840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6845 38.935 NaN 64583 35 0 17103 0.261 + 14306 LDGSHPAFLYG 11 30 588.7875183295918 1175.5604837259834 2 588.7874145507812 MULTI HCD FTMS 0 0 0 6840 15265.015625 0.636416409157173 -4 0.1093597412109375 5 Unmodified _LDGSHPAFLYG_ ENSG00000085377|ENST00000652536|PREP 2.9952420565917617 0.40578455234410343 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103251 NaN 4561 2282 6840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6846 38.938 NaN 43333 35 0 6217.7 0.261 -1 DLHHRWTM 8 35 556.2582716471417 1110.5019903610832 2 556.2594604492188 MULTI HCD FTMS 0 0 0 6840 10269.841796875 0.12858571629517654 -8 0.19860458374023438 6 Oxidation (M) _DLHHRWTM(Oxidation (M))_ ENSG00000154678|ENST00000396191|PDE1C;nc|ENSG00000154678|Q14123-2|PDE1C;nc|ENSG00000154678|Q14123-3|PDE1C 2.0597508629832335 0.5389364538378849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89875.5 NaN 4562 2282 6840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6848 38.944 NaN 2148200 35 0 235970 0.327 + 18931 NAFKEITTM 9 85 535.7627861154677 1069.5110192977354 2 535.7632446289062 MULTI HCD FTMS 0 0 0 6847 1285186.5 0.8621522940404908 2 -0.059642791748046875 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 195.45211591753656 1.8365487807996522E-14 2 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 121.61 0 0 11.371 11.371 91.997 0 0 0 4.798435903271937 4.798435903271937 4.798435903271937 4.798435903271937 0 3.110924374808178 1.5228787452803376 1.872363747448347 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QGE{I|L}TT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[AG]GE{I|L}TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}CK[VG]{I|L}TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KN{[CP]|[EA]};[{M(Oxidation (M))|F}T]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KN{[CP]|[EA]};{[DS]|[MA]|[CV]|TT}CK[VG]{I|L}{[DA]|[EG]}Y 11.371;10.922;7.2964;6.4354;5.5629;3.2158;3.2116;2.0338;2.0297;1.6338 +;+;-;-;-;-;-;-;-;- + 1312 + NaN NaN 429830.6 NaN 4563 2283 6847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6849 38.948 NaN 300340 35 0 20029 0.262 -1 KMPKFKMPSF 10 63 419.55580753882873 1255.6455932166862 3 419.5557861328125 MULTI HCD FTMS 0 0 0 6847 107520.3828125 0.9669949751088155 -4 0.10264968872070312 2 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 15.538449434065043 0.365770603482074 2 KM[KP]{M(Oxidation (M))|F} 5 -1 22.447 0 0 1.7877 0 0 0 621.2711886041624 621.2711886041624 2.5703200056423903 0 0 0 0 0.5 0 0 0 KM[KP]{M(Oxidation (M))|F} 1.7877 + + 27 + NaN NaN 145554.7 NaN 4564 2283 6847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6850 38.952 NaN 240190 35 0 26929 0.261 + 10256 IIQSREPSL 9 52 521.7981815078778 1041.5818100825554 2 521.7981567382812 MULTI HCD FTMS 0 0 0 6847 79422.375 0.7858514847444042 5 -0.13571929931640625 3 Unmodified _IIQSREPSL_ BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;ENSG00000137948|ENST00000399546|BRDT;ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000137948|Q58F21-2|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4 45.739877483867886 0.03899552410870734 2 {I|L}{I|L}Q 3 6 34.309 0 0 3.2939 0 0 0 684.3317850183554 684.3317850183554 10.809159218443796 0 0 0 0 0.9247425010840047 2 0 0 + {I|L}{I|L}Q 3.2939 + + 75 NaN NaN 121182.4 NaN 4565 2283 6847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6851 38.955 NaN 51165 35 0 5767.9 0.261 + 14167 LAHLFMVL 8 28 472.27686517747173 942.5391774217435 2 472.27667236328125 MULTI HCD FTMS 0 0 0 6847 21916.65625 0.697803423060731 1 -0.023193359375 4 Unmodified _LAHLFMVL_ ENST00000457388.1_1_10:37627086-37627398:+|nuORF;REV__ENSG00000166133|ENST00000315616|RPUSD2;REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2 6.354104778181461 0.5325651638111438 2 V{I|L} 2 6 19.464 0 0 2.0651 0 0 712.3784657209 0 712.3784657209 0 19.463950151760656 0 0 0 0 0 0 0 + V{I|L} 2.0651 + + 8 NaN NaN 90118.1 NaN 4566 2283 6847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6852 38.958 NaN 18559 35 0 3472.1 0.261 -1 LKWPLCRCD 9 16 624.3044958108553 1246.5944386885105 2 624.3045043945312 MULTI HCD FTMS 0 0 0 6847 12207.451171875 0.6936334298948832 1 -0.023193359375 5 2 Carbamidomethyl (C) _LKWPLC(Carbamidomethyl (C))RC(Carbamidomethyl (C))D_ LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|63|3|anti-sense 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 84835.7 NaN 4567 2283 6847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6853 38.962 NaN 33570 35 0 2503.1 0.261 + 11093 IYHNPTANSF 10 30 582.2775004336673 1162.5404479341346 2 582.2777099609375 MULTI HCD FTMS 0 0 0 6847 15362.5283203125 0.8085644286584245 -1 0.023143768310546875 6 Unmodified _IYHNPTANSF_ ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF;VASP|p.R48C|1|0.09|ENSG00000125753|chr19:45517799-45517799|C/T|missense_variant 7.101721422024254 0.4377131641736035 2 AN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 6 20.445 0 0 1.7587 0 0 725.3488636701187 0 725.3488636701187 0 20.445312593723983 0 0 0 0.4247425010840047 0 0 0 + AN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.7587 + + 9 NaN NaN 115530.6 NaN 4568 2283 6847 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6855 38.967 NaN 175070 35 0 46402 0.327 -1 0 33 441.78801501187917 881.5614770905584 2 441.7879638671875 MULTI HCD FTMS 0 0 0 6854 110935.046875 0.8814427127781479 -1 0.023193359375 1 NaN NaN 2 N 1 -1 8.7371 0 0 0.9911 0 0 183.16187575843554 581.3449674910887 764.5068432495243 0 0 0 0 0 0.3252574989159953 0 0 0 N 0.9911 - 4 + NaN NaN 122062.2 NaN 4569 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6856 38.971 NaN 103190 35 0 11618 0.261 + 27755 TATKIEITM 9 28 512.2731389515716 1022.5317249699432 2 512.2731323242188 MULTI HCD FTMS 0 0 0 6854 67345.59375 0.4553096258376385 10 -0.254638671875 2 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 47.594388314883695 0.03493607795751234 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 53.394 0 0 5.2218 5.2218 91.932 0 0 0 46.40478432233856 16.478174818886373 16.478174818886373 53.394484365698744 0 1.805462187404089 0 0.4247425010840047 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 5.2218 + + 25 + NaN NaN 94698 NaN 4570 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6857 38.975 NaN 179950 35 0 19589 0.261 + -1 ELEAHPKM 8 50 485.7367207567345 NaN 0 485.7456970214844 PEAK HCD FTMS 0 0 0 6854 6709.2978515625 0.40160481267267617 -5 0.12584304809570312 3 Oxidation (M) _ELEAHPKM(Oxidation (M))_ REV__ENSG00000011451|ENST00000673675|WIZ;REV__nc|ENSG00000011451|O95785|WIZ 7.910154910731844 0.38822285293237185 2 EV 2 -1 9.464 0 0 0.97621 0 0 131.07723596958323 607.2461641900999 738.3234001596832 0 0 0 0 0 0 0 0 0 EV 0.97621 - 27 + NaN NaN 106080.8 NaN 4571 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6858 38.978 NaN 79461 35 0 8904.2 0.261 + 210 AETVRYSMCT 10 29 580.7568288503979 1159.4991047675958 2 580.757568359375 MULTI HCD FTMS 0 0 0 6854 43504.8828125 0.028915758532660048 24 -0.56890869140625 4 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 8.155526934196011 0.43213520406898465 2 STGE 4 9 39.923 0 0 3.4431 0 0 353.1053263511313 429.2247713678344 782.3300977189657 0 0 0 0 0 1.6747425010840047 0 0.4247425010840047 0 STGE 3.4431 - 23 + NaN NaN 98146.6 NaN 4572 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6859 38.981 NaN 75978 35 0 12899 0.261 + 25789 SLLGDQASQL 10 36 516.2720194582631 1030.5294859833261 2 516.2723388671875 MULTI HCD FTMS 0 0 0 6854 31536.80078125 0.48501718678387773 4 -0.11252593994140625 5 Unmodified _SLLGDQASQL_ REV__ENST00000393441.8_2_10:103313048-103313144:+|nuORF 15.248480904072842 0.3684828712757339 2 S{I|L} 2 -1 19.464 0 0 1.8887 0 0 812.4015370099625 0 812.4015370099625 0 8.494850021680094 0 0 0 0 0 0 0 S{I|L} 1.8887 + + 10 NaN NaN 94729.9 NaN 4573 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6860 38.985 NaN 58720 35 0 18046 0.261 + -1 DILVMCLI 8 32 496.7614487724925 991.508344611785 2 496.76190185546875 MULTI HCD FTMS 0 0 0 6854 14737.619140625 0.06514063654429231 16 -0.3929710388183594 6 Carbamidomethyl (C),Oxidation (M) _DILVM(Oxidation (M))C(Carbamidomethyl (C))LI_ REV__ENSG00000144290|ENST00000446997|SLC4A10;REV__ENST00000446228.5_1_2:162758621-162834241:+|nuORF;REV__nc|ENSG00000144290|Q6U841-2|SLC4A10;REV__nc|ENSG00000144290|Q6U841-3|SLC4A10 4.75600775471527 0.5349361699807423 2 {I|L}{I|L} 2 -1 20.969 0 0 2.1149 0 0 747.3315907209 0 747.3315907209 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 2.1149 + + 1 NaN NaN 107194.8 NaN 4574 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6861 38.988 NaN 48609 35 0 6445.6 0.261 + 2715 DVLGQQKI 8 30 450.7610544098566 899.5075558865133 2 450.7606506347656 MULTI HCD FTMS 0 0 0 6854 15672.9970703125 0.9224511925598556 1 -0.036449432373046875 7 Unmodified _DVLGQQKI_ REV__ENSG00000106070|ENST00000401949|GRB10;REV__nc|ENSG00000106070|Q13322-2|GRB10;REV__nc|ENSG00000106070|Q13322-3|GRB10;REV__nc|ENSG00000106070|Q13322-4|GRB10 12.531546534597751 0.5015908124873912 2 [DV]{I|L} 3 -1 32.275 0 0 3.5881 0 0 0 569.3061007135374 569.3061007135374 32.275071725447404 0 0 0 0 0.8807196863200843 1.3010299956639813 0 0 [DV]{I|L} 3.5881 + + 7 + NaN NaN 82867.9 NaN 4575 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6862 38.991 NaN 41777 35 0 4669.2 0.261 + 18470 MPYIPLMEF 9 29 570.7753155456538 1139.5360781581076 2 570.792724609375 MULTI HCD FTMS 0 0 0 6854 10476.884765625 0.4890991861545057 -3 0.06951522827148438 8 Unmodified _MPYIPLMEF_ ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF 4.3292370932331545 0.3181982124262546 2 V{[ES]|[DT]|[{I|L}C]} 3 8 10.458 0 0 0.9177 0 0 806.390821286589 0 806.390821286589 0 6.478174818886375 0 0 0 0 0 0 0 V{[ES]|[DT]|[{I|L}C]} 0.9177 - 4 NaN NaN 98618.7 NaN 4576 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6863 38.995 NaN 17613 35 0 7215.4 0.261 + 34114 YNQFIFYLK 9 16 618.32666015625 NaN 0 618.32666015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YNQFIFYLK_ REV__ENSG00000184986|ENST00000392519|TMEM121 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90752.8 NaN 4577 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6864 38.998 NaN 16436 35 0 4857.7 0.261 + -1 EQIWDLYHC 9 16 632.2744750976562 NaN 0 632.2744750976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _EQIWDLYHC(Carbamidomethyl (C))_ REV__ENSG00000213022|ENST00000594211|KLK9 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82843.8 NaN 4578 2284 6854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6866 39.003 NaN 219820 35 0 22703 0.327 + 97 ADKMDMSL 8 52 492.7042973904869 983.3940418477738 2 492.70428466796875 MULTI HCD FTMS 0 0 0 6865 149441.984375 0.799665210858131 -19 0.5044670104980469 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 57.72198328787511 0.07996266466726457 2 {M(Oxidation (M))|F}S{I|L} 3 5 38.5 0 0 3.915 0 0 618.2321644513687 0 618.2321644513687 0 24.035984316004217 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.915 + + 32 NaN NaN 127729 NaN 4579 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6867 39.008 NaN 289150 35 0 26747 0.261 + 31601 VYIKHPVSL 9 66 528.3159559173213 1054.6173589014425 2 528.3160400390625 MULTI HCD FTMS 0 0 0 6865 94615.8515625 0.07096356296843878 12 -0.290863037109375 2 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 66.45667989310934 0.010234776021261575 2 VY{I|L}KH[VP]S{I|L} 9 0 + 73.923 0 0 7.0095 7.0095 93.575 0 0 0 53.47804375441612 16.45628410553762 16.45628410553762 25.11561899423569 0 1.8851518780601921 2 1 0 + + VY{I|L}KH[VP]S{I|L};[YV]{I|L}KH[VP]S{I|L} 7.0095;4.628 +;+ + 159 + NaN NaN 143072.8 NaN 4580 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6868 39.011 NaN 237940 35 0 14671 0.261 + 23169 RFKTQPVTF 9 74 562.3160819650653 1122.6176109969306 2 562.3165893554688 MULTI HCD FTMS 0 0 0 6865 62562.71875 0.677831434542941 1 -0.029819488525390625 3 Unmodified _RFKTQPVTF_ ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96 32.78568957990786 0.09846250359632436 2 {I|L}T{M(Oxidation (M))|F} 3 7 27.179 0 0 2.4211 0 0 743.4037342755875 0 743.4037342755875 0 9.163865622122671 0 0 0 0.4247425010840047 0 0.5 0 {I|L}T{M(Oxidation (M))|F} 2.4211 - 164 NaN NaN 123389.1 NaN 4581 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6869 39.015 NaN 91719 35 0 14170 0.261 + 17682 MAHRNSTHQN 10 26 598.27379777614 1194.5330426190799 2 598.2910766601562 MULTI HCD FTMS 0 0 0 6865 6371.72265625 0.11015572699554484 34 -0.8268318176269531 4 Unmodified _MAHRNSTHQN_ ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR 2.498486711656943 0.462078817294651 2 MEH{M(Oxidation (M))|F} 4 8 31.938 0 0 2.6737 0 0 0 647.2796143354338 647.2796143354338 27.33410649039925 0 0 0 0 0 0 0 0 MEH{M(Oxidation (M))|F} 2.6737 - 15 + NaN NaN 103531.9 NaN 4582 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6870 39.018 NaN 141970 35 0 27321 0.261 + 23539 RNSQWVPTL 9 35 550.796336256495 1099.57811957979 2 551.2843017578125 MULTI HCD FTMS 0 0 0 6865 9235.859375 1 0 0 5 Unmodified _RNSQWVPTL_ ENSG00000099956|ENST00000644036|SMARCB1;ENST00000491967.1_1_22:24135798-24143581:+|nuORF;nc|ENSG00000099956|Q12824-2|SMARCB1 1.6526216038709556 0.33848895094777925 2 TT 2 8 13.583 0 0 1.2353 0 0 130.12451958154617 764.3416231744749 894.4661427560211 0 0 0 0 0 0 0 0.5 0 TT 1.2353 - 4 + NaN NaN 101480.7 NaN 4583 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6871 39.021 NaN 76480 35 0 14661 0.261 + 4245 EVFSPPGSDR 10 28 545.76180220852 1089.5090514838398 2 545.7622680664062 MULTI HCD FTMS 0 0 0 6865 31896.75390625 0.6520277408290085 2 -0.05297088623046875 6 Unmodified _EVFSPPGSDR_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 23.789781309258295 0.28859042913526417 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SP 5 5 45.607 0 0 4.186 0 0 0 527.2193087213499 527.2193087213499 31.89601585989326 0 0 0 0 0.7614393726401688 2 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}SP 4.186 + + 20 + NaN NaN 105322.8 NaN 4584 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6872 39.025 NaN 112370 35 0 24641 0.262 + -1 ESSMCCIS 8 40 458.66442677122524 915.3143006092505 2 458.6646423339844 MULTI HCD FTMS 0 0 0 6865 25841.12109375 0.2800449218110048 -5 0.13574981689453125 7 Carbamidomethyl (C) _ESSMC(Carbamidomethyl (C))CIS_ REV__ENST00000428135.7_1_7:17831871-17832039:-|nuORF 4.75600775471527 0.5349361699807423 2 R 1 -1 6.7217 0 0 0.73436 0 0 62.00073683778266 694.1682222955686 756.1689591333513 0 0 0 0 0 0.4247425010840047 0 0 0 R 0.73436 - 9 + NaN NaN 110304.6 NaN 4585 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6873 39.028 NaN 47644 35 0 5573.8 0.261 + 23945 RTVWRPWF 8 21 574.3106131338517 1146.6066733345033 2 574.291015625 MULTI HCD FTMS 0 0 0 6865 2458.65087890625 0.17373320069486145 5 -0.118927001953125 8 Unmodified _RTVWRPWF_ REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF 0.7936320650641473 0.540814922690045 2 T 1 -1 8.8515 0 0 0.77198 0 0 131.13269425742652 911.400676866519 1042.5333711239455 0 0 0 0 0 0 0 0.4247425010840047 0 T 0.77198 + + 5 + NaN NaN 85148.5 NaN 4586 2285 6865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6875 39.033 NaN 126880 35 0 16315 0.327 -1 CHKAPMLAL 9 37 500.2587852192573 998.5030175053146 2 500.25897216796875 MULTI HCD FTMS 0 0 0 6874 79671.15625 1 0 0 1 Oxidation (M) _CHKAPM(Oxidation (M))LAL_ ENST00000427737.5_1_2:220142664-220142850:-|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}A{I|L} 3 -1 31.198 0 0 3.1245 0 0 683.288377830275 0 683.288377830275 0 27.21848749616356 0 0 0 0.5 0 0 0 {I|L}A{I|L} 3.1245 + + 29 NaN NaN 100593.8 NaN 4587 2286 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6876 39.038 NaN 138630 35 0 20095 0.262 -1 VYTRHMTWI 9 33 408.20617877439923 1221.5967069233977 3 408.2063293457031 MULTI HCD FTMS 0 0 0 6874 55795.37890625 0.31781014041782074 16 -0.3656501770019531 2 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 13.614867670302875 0.2427269026982664 2 VY 2 -1 37.959 0 0 3.1073 0 0 0 956.4427121337982 956.4427121337982 16.505149978319906 0 0 0 0 0 2 0 0 VY 3.1073 + + 4 + NaN NaN 115714.1 NaN 4588 2286 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6877 39.041 NaN 78549 35 0 9587.5 0.261 + 16074 LPSPVQSLA 9 42 456.2634495607146 910.5123461882292 2 456.2637023925781 MULTI HCD FTMS 0 0 0 6874 32482.091796875 0.06981865269747659 9 -0.21479415893554688 3 Unmodified _LPSPVQSLA_ REV__ENSG00000158555|ENST00000336898|GDPD5;REV__GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant;REV__nc|ENSG00000158555|Q8WTR4-2|GDPD5;REV__nc|ENSG00000158555|Q8WTR4-3|GDPD5;REV__nc|ENSG00000158555|Q8WTR4-4|GDPD5;REV__nc|ENSG00000158555|Q8WTR4-5|GDPD5 19.361941925380144 0.1930734562688509 2 {I|L}PSP 4 -1 40.037 0 0 4.3972 0 0 0 513.2689913385374 513.2689913385374 14.119543704721593 0 0 0 0 0.8494850021680094 0 0.5 0 {I|L}PSP 4.3972 + + 29 + NaN NaN 97144.6 NaN 4589 2286 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6878 39.044 NaN 72345 35 0 10165 0.261 + 17404 LYQRAFQHL 9 24 588.3195214188075 1174.624489904415 2 588.319580078125 MULTI HCD FTMS 0 0 0 6874 31629.904296875 0.8462490673734928 -4 0.11260604858398438 4 Unmodified _LYQRAFQHL_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 10.823927491677226 0.26684000660059787 2 QH{I|L} 3 6 31.198 0 0 2.656 0 0 778.4152699201187 0 778.4152699201187 0 31.197887582883936 0 0 0 0.5 0 0 0 + QH{I|L} 2.656 + + 4 NaN NaN 94063.8 NaN 4590 2286 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6879 39.048 NaN 40158 35 0 4630.1 0.261 + 25400 SELQARETF 9 21 540.7695478010157 1079.5245426688314 2 540.7694091796875 MULTI HCD FTMS 0 0 0 6874 12384.4658203125 0.7235564579405083 1 -0.023151397705078125 5 Unmodified _SELQARETF_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 2.9952420565917617 0.3283108881486655 2 T 1 8 4.6041 0 0 0.42649 0 0 530.2583816354314 445.1949862115844 975.4533678470159 0 0 0 0 0 0 0 0 0 + T 0.42649 + + 2 + NaN NaN 98650.9 NaN 4591 2286 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6880 39.051 NaN 24381 35 0 2266.3 0.261 + -1 MKGFFLSDTSV 11 27 624.304220191457 NaN 0 624.3405151367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))KGFFLSDTSV_ REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86463.4 NaN 4592 2286 6874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6882 39.056 NaN 226300 35 0 18225 0.327 + 34524 YPGQPHPAL 9 70 490.25345391007306 978.4923548869461 2 490.2534484863281 MULTI HCD FTMS 0 0 0 6881 114835.0859375 0.47155116106579886 4 -0.08911514282226562 1 Unmodified _YPGQPHPAL_ ENSG00000114315|ENST00000232424|HES1 42.09456458481378 0.05572955244001856 2 YP 2 7 40.261 0 0 4.1146 0 0 0 715.3526197090681 715.3526197090681 8.873409493950675 0 0 0 0 0.3807196863200844 2 0 0 + YP 4.1146 + + 94 + NaN NaN 119869.4 NaN 4593 2287 6881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6883 39.061 NaN 196700 35 0 29067 0.261 + 21000 PLNEQQEL 8 39 485.7456274929599 969.4767020527198 2 486.2342529296875 MULTI HCD FTMS 0 0 0 6881 11434.6142578125 0.4182021341834732 1 -0.023105621337890625 2 Unmodified _PLNEQQEL_ REV__ENST00000394456.9_1_19:6389571-6391922:-|nuORF 20.453626601364224 0.4433031943603284 2 A{M(Oxidation (M))|F} 2 -1 22.391 0 0 2.3096 0 0 733.3942568396324 0 733.3942568396324 0 0.18446553540229615 0 0 0 0.3807196863200844 0 0 0 A{M(Oxidation (M))|F} 2.3096 - 42 + NaN NaN 117645 NaN 4594 2287 6881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6884 39.064 NaN 87221 35 0 14499 0.261 + 3040 EAFEFVKQR 9 41 577.3012375474289 1152.5879221616576 2 577.802734375 MULTI HCD FTMS 0 0 0 6881 30952.87109375 0.9821263681278788 -3 0.08942031860351562 3 Unmodified _EAFEFVKQR_ ENSG00000120129|ENST00000239223|DUSP1;ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F}VK{[{M(Oxidation (M))|F}H]|[RQ]} 5 4 11.427 0 0 0.99139 0 0 476.18541292685023 0 476.18541292685023 0 4.436974992327123 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}VK{[{M(Oxidation (M))|F}H]|[RQ]} 0.99139 + + 40 + NaN NaN 110113.3 NaN 4595 2287 6881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6885 39.068 NaN 32870 35 0 4142.3 0.261 -1 MIANDVHTL 9 28 515.2553988039168 1028.4962446746335 2 515.2549438476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 3.5964929083625545 0.32375295897743744 2 S 1 -1 6.9897 0 0 0.6796 0 0 173.07004946154603 765.3543795221311 938.4244289836772 0 0 0 0 0 0 0 0 0 S 0.6796 - 1 + NaN NaN 103646.4 NaN 4596 2287 6881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6886 39.071 NaN 54526 35 0 5796 0.261 + 16765 LYDKGKSLA 9 28 497.7817844577082 993.5490159822165 2 497.781982421875 MULTI HCD FTMS 0 0 0 6881 10985.9150390625 0.7568560109039805 4 -0.08911514282226562 5 Unmodified _LYDKGKSLA_ REV__ENSG00000094975|ENST00000263688|SUCO;REV__nc|ENSG00000094975|Q9UBS9-2|SUCO 1.844237919475145 0.33703635659052655 2 A 1 -1 6.9897 0 0 0.70351 0 0 132.1914811703552 787.3036410043878 919.4951221747431 0 0 0 0 0 0 0 0 0 A 0.70351 + + 2 + NaN NaN 106027.6 NaN 4597 2287 6881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6887 39.074 NaN 42896 35 0 6451.1 0.261 + -1 LCCVCGVGGFI 11 27 564.2555876876287 1126.4966224420573 2 564.757080078125 MULTI HCD FTMS 0 0 0 6881 2712.47509765625 0.19002711756195487 -2 0.05297088623046875 6 Carbamidomethyl (C) _LC(Carbamidomethyl (C))CVCGVGGFI_ REV__ENSG00000124564|ENST00000397060|SLC17A3;REV__nc|ENSG00000124564|O00476|SLC17A3 1.4819007175156935 0.4124215533673021 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96239.1 NaN 4598 2287 6881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6889 39.079 NaN 3533900 35 0 873260 0.327 + 19191 NIEGPDAKL 9 91 478.7560145821947 955.4974762311895 2 478.7563171386719 MULTI HCD FTMS 0 0 0 6888 3064723.25 0.9321046435928899 -1 0.023105621337890625 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 155.95374464489888 2.532374632554729E-06 2 {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 9 0 + 107.92 0 0 11.294 11.294 96.704 0 0 0 17.822471636270308 16.478174818886373 16.478174818886373 14.842757820673015 0 2.3494850021680094 2 1.3226825097560422 2.135151878060192 + + {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};N{I|L}EG[DP]AK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QG[DP]AK{I|L};{NN|[MP]|[D{I|L}]|[EV]}AGG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L};{[QN]|[E{I|L}]|[KN]}NG[DP]AK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QG[PS]{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}E[KP]EN{I|L};{[QN]|[E{I|L}]|[KN]}GGG[DP]AK{I|L} 11.294;9.7408;9.429;9.1422;8.8271;8.7771;7.6284;7.5888;7.469;7.3134 +;-;+;-;-;-;-;-;-;- + 1166 NaN NaN 616349.5 NaN 4599 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6890 39.084 NaN 702820 35 0 84470 0.261 + 18932 NAFKEITTM 9 64 535.7627861154677 1069.5110192977354 2 535.7631225585938 MULTI HCD FTMS 0 0 0 6888 236676.53125 0.15877167583283314 7 -0.16853713989257812 2 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 128.93241758739586 0.0006697181619526092 2 {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 99.311 0 0 9.2856 9.2856 98.884 0 0 0 2.8959062302381255 2.8959062302381255 2.8959062302381255 85.64326570884303 0 2.9916440611282624 1.5228787452803376 0.7614393726401688 0.75 + + {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KE{[QG]|[NA]};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KE{[QG]|[NA]} 9.2856;1.2779;1.2301 +;-;- + 231 NaN NaN 204873.4 NaN 4600 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6891 39.087 NaN 189800 35 0 16297 0.261 + 13896 KYQELYPAI 9 43 562.8053843575852 NaN 0 562.795166015625 PEAK HCD FTMS 0 0 0 6888 3363.41064453125 0.2210902126987047 -4 0.11252593994140625 3 Unmodified _KYQELYPAI_ REV__PMCH|p.S62Y|1|0.22|ENSG00000183395|chr12:102197586-102197586|G/T|missense_variant 8.745405648335112 0.25286782695573473 2 PG 2 -1 10.701 0 0 0.9524 0 0 137.07853217696146 829.4142802349058 966.4928124118674 0 0 0 0 0 0.4247425010840047 0 0 0 PG 0.9524 - 55 + NaN NaN 114705.2 NaN 4601 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6892 39.091 NaN 81827 35 0 10269 0.261 -1 QADFLDKQM 9 37 556.2582716471417 1110.5019903610832 2 556.2582397460938 MULTI HCD FTMS 0 0 0 6888 61503.29296875 0.7700649277095257 -2 0.04625701904296875 4 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 19.361941925380144 0.1930734562688509 2 [QA]D{M(Oxidation (M))|F}{I|L}D 6 -1 24.143 0 0 2.1741 0 0 0 418.17719446353755 418.17719446353755 16.18440000316717 0 0 0 0 0.3252574989159953 0 0 0 [QA]D{M(Oxidation (M))|F}{I|L}D 2.1741 + + 27 + NaN NaN 96806.2 NaN 4602 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6893 39.094 NaN 207360 35 0 37958 0.261 + -1 VAGCWCGSL 9 49 505.2136228311368 1008.4126927290736 2 505.2117004394531 MULTI HCD FTMS 0 0 0 6888 40390.84765625 0.7664563346154976 -1 0.023105621337890625 5 2 Carbamidomethyl (C) _VAGC(Carbamidomethyl (C))WC(Carbamidomethyl (C))GSL_ REV__ENST00000598297.1_1_19:58116980-58118690:+|nuORF 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F}{[CP]|[EA]} 3 -1 8.9524 0 0 0.88777 0 0 643.3188343732437 0 643.3188343732437 0 0.26802492411967194 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{[CP]|[EA]} 0.88777 - 17 NaN NaN 112937.7 NaN 4603 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6894 39.097 NaN 33097 35 0 4968.5 0.261 + 18471 MPYIPLMEF 9 25 570.7753155456538 1139.5360781581076 2 570.7750244140625 MULTI HCD FTMS 0 0 0 6888 15395.70703125 0.7187277466259668 1 -0.026409149169921875 6 Unmodified _MPYIPLMEF_ ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF 4.3292370932331545 0.3181982124262546 2 W 1 9 6.9897 0 0 0.61338 0 0 638.2796522321295 312.1461275690063 950.4257798011358 0 0 0 0 0 0 0 0 0 W 0.61338 - 2 + NaN NaN 90492.1 NaN 4604 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6895 39.101 NaN 43533 35 0 6349.3 0.262 -1 YAVCHCLP 8 25 481.71509706442873 961.4156411956575 2 481.7154235839844 MULTI HCD FTMS 0 0 0 6888 13304.73828125 0.2721397767199931 -9 0.23836898803710938 7 Carbamidomethyl (C) _YAVC(Carbamidomethyl (C))HCLP_ COPS6|p.L263V|1|0.19|ENSG00000168090|chr7:100091464-100091464|C/G|missense_variant 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 110639.3 NaN 4605 2288 6888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6897 39.106 NaN 110550 35 0 24261 0.327 -1 0 36 441.78801501187917 881.5614770905584 2 441.78790283203125 MULTI HCD FTMS 0 0 0 6896 73113 0.5809248102807792 4 -0.09257125854492188 1 NaN NaN 2 {I|L} 1 -1 12.474 0 0 1.415 0 0 750.4667943286428 0 750.4667943286428 0 2.7422750325201406 0 0 0 0 0 0 0 {I|L} 1.415 - 3 + NaN NaN 102642.4 NaN 4606 2289 6896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6898 39.11 NaN 241810 35 0 14314 0.261 + 14165 LAHDGHLLHPF 11 73 419.55580753882873 1255.6455932166862 3 419.55572509765625 MULTI HCD FTMS 0 0 0 6896 68900.140625 0.6196600870074285 2 -0.039600372314453125 2 Unmodified _LAHDGHLLHPF_ REV__ENST00000589096.1_1_19:13869843-13870239:+|nuORF 3.2813086475875832 0.40452996145431686 2 KM 2 -1 19.085 0 0 1.5199 0 0 0 993.4864548609252 993.4864548609252 2.0954424394881066 0 0 0 0 0.28872548999643577 0 0 0 KM 1.5199 - 7 + NaN NaN 129222.3 NaN 4607 2289 6896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6899 39.114 NaN 84571 35 0 7016.6 0.261 + 27756 TATKIEITM 9 37 512.2731389515716 1022.5317249699432 2 512.2730102539062 MULTI HCD FTMS 0 0 0 6896 49324.27734375 0.33347123414580815 15 -0.3321342468261719 3 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 47.594388314883695 0.03493607795751234 2 [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 9 0 + 55.212 0 0 5.3995 5.3995 92.241 0 0 0 27.94917177197476 14.537881139012043 14.537881139012043 55.2119811855394 0 1.7614393726401687 0 0.3494850021680094 0 + + [TA]TK{[QN]|[E{I|L}]|[KN]}{I|L}T{M(Oxidation (M))|F} 5.3995 + + 33 + NaN NaN 98980.8 NaN 4608 2289 6896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6900 39.117 NaN 120250 35 0 13560 0.261 -1 QPMQPTPSM 9 56 516.7280987248648 1031.4416445165295 2 516.7280883789062 MULTI HCD FTMS 0 0 0 6896 45888.98828125 1 0 0 4 Oxidation (M) _QPM(Oxidation (M))QPTPSM_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 13.042465956692817 0.2476723265019929 2 M 1 -1 4.8464 0 0 0.46986 0 0 500.2047193229733 397.1763094537719 897.3810287767452 0 0 0 0 0 0.3252574989159953 0 0 0 M 0.46986 + + 14 + NaN NaN 112583.2 NaN 4609 2289 6896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6902 39.122 NaN 119200 35 0 10213 0.327 + 16120 LPTENVDKM 9 44 523.7630781582607 1045.5116033833212 2 523.7628173828125 MULTI HCD FTMS 0 0 0 6901 43151.53515625 0.8807710139820135 -1 0.01644134521484375 1 Unmodified _LPTENVDKM_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 17.44264345198275 0.2096557692338702 2 YKM 3 7 27.435 0 0 2.6241 0 0 605.2836170880875 0 605.2836170880875 0 6.465912507003608 0 0 0 0.4247425010840047 0 0 0 YKM 2.6241 - 11 NaN NaN 100630.1 NaN 4610 2290 6901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6903 39.127 NaN 69032 35 0 6164.3 0.261 + 211 AETVRYSMCT 10 41 580.7568288503979 1159.4991047675958 2 580.7573852539062 MULTI HCD FTMS 0 0 0 6901 30300.91015625 0.02013966582036639 30 -0.7343711853027344 2 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 4.897010918128616 0.4493830473644964 2 S{[SA]|[TG]}E 4 9 17.193 0 0 1.4828 0 0 353.10599708795866 429.2262362115844 782.3322332995431 0 0 0 0 0 1.25 0 0 0 S{[SA]|[TG]}E 1.4828 - 10 + NaN NaN 114694.3 NaN 4611 2290 6901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6904 39.13 NaN 26775 35 0 4329 0.261 + 35296 YVYTHIRNA 9 22 568.7954078457159 1135.5762627582317 2 569.2975463867188 MULTI HCD FTMS 0 0 0 6901 4446.216796875 0.24150509396785474 1 -0.023159027099609375 3 Unmodified _YVYTHIRNA_ REV__ENSG00000149507|ENST00000278855|OOSP2 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 98664.5 NaN 4612 2290 6901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6905 39.133 NaN 59915 35 0 21230 0.262 + 28082 THGETHGY 8 29 451.1939051132524 NaN 0 451.18243408203125 PEAK HCD FTMS 0 0 0 6901 2198.416748046875 0.709321823549647 1 -0.023159027099609375 4 Unmodified _THGETHGY_ REV__ENSG00000198554|ENST00000360586|WDHD1;REV__WDHD1|p.K269Lfs*35|1|0.08|ENSG00000198554|chr14:55000641-55000642|-/TATAGTAGATGCTGAGT|frameshift_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97031.3 NaN 4613 2290 6901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6906 39.137 NaN 42503 35 0 9219.6 0.261 -1 RYLEKPMEI 9 20 597.8154127553832 NaN 0 597.813232421875 PEAK HCD FTMS 0 0 0 6901 7992.2783203125 0.051986397758603725 -14 0.36402130126953125 5 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 1.4819007175156935 0.28806575819904134 2 K 1 -1 3.9794 0 0 0.33339 0 0 504.2292619347914 558.2684420221311 1062.4977039569226 0 0 0 0 0 0 0 0 0 K 0.33339 + + 1 + NaN NaN 100953.1 NaN 4614 2290 6901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6907 39.14 NaN 60238 35 0 8049.4 0.263 + -1 HFCARCAS 8 42 476.1987022477909 NaN 0 476.19842529296875 PEAK HCD FTMS 0 0 0 6901 7437.51611328125 0.42295304442785564 -11 0.281219482421875 6 Carbamidomethyl (C) _HFCARC(Carbamidomethyl (C))AS_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__ENST00000441284.5_2_13:46917522-46942212:-|nuORF;REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-6|RUBCNL 2.8892196856762586 0.38822285293237185 2 D 1 -1 3.9794 0 0 0.41872 0 0 408.14897812663804 424.1836336725219 832.33261179916 0 0 0 0 0 0 0 0 0 D 0.41872 - 2 + NaN NaN 107645.6 NaN 4615 2290 6901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6909 39.145 NaN 224960 35 0 21961 0.327 + 98 ADKMDMSL 8 46 492.7042973904869 983.3940418477738 2 492.7042236328125 MULTI HCD FTMS 0 0 0 6908 139893.09375 0.7485690234845696 -13 0.3342323303222656 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 57.72198328787511 0.07996266466726457 2 {M(Oxidation (M))|F}S{I|L} 3 5 36.995 0 0 3.7619 0 0 618.2304554669937 0 618.2304554669937 0 13.438265792396251 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.7619 + + 40 NaN NaN 120384.1 NaN 4616 2291 6908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6910 39.15 NaN 186610 35 0 15991 0.261 + 31602 VYIKHPVSL 9 51 528.3159559173213 1054.6173589014425 2 528.3160400390625 MULTI HCD FTMS 0 0 0 6908 60802.546875 0.04560298610170334 18 -0.4134864807128906 2 Unmodified _VYIKHPVSL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 27.628801355627647 0.12213550946336599 2 [YV]{I|L}KH[VP]{[TV]|[{I|L}S]} 9 0 + 48.094 0 0 4.5604 4.5604 90.833 0 0 0 39.86757473850034 4.154237220656682 4.154237220656682 48.09439983606076 0 1.274227503252014 2 0 0 + + [YV]{I|L}KH[VP]{[TV]|[{I|L}S]} 4.5604 + + 50 + NaN NaN 115497.1 NaN 4617 2291 6908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6911 39.153 NaN 120070 35 0 14151 0.261 + 1567 AYVHMVTHF 9 42 560.7657330135318 1119.5169130938634 2 560.7658081054688 MULTI HCD FTMS 0 0 0 6908 48891.296875 0.043419226085479615 83 -2.117176055908203 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 64.23631603340823 0.01165516075559909 2 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 2 + 70.455 0 0 6.2933 6.2933 92.151 0 0 0 64.97047912498971 9.889917747712644 9.889917747712644 22.50585741805523 0 2.004432191740108 0 0.4247425010840047 0 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SV[MN]A[PA]H{M(Oxidation (M))|F} 6.2933;4.283 -;- 149 + NaN NaN 103879.6 NaN 4618 2291 6908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6912 39.157 NaN 142410 35 0 11790 0.261 + 20830 PHTQRMNKL 9 41 562.8053843575852 NaN 0 562.7951049804688 PEAK HCD FTMS 0 0 0 6908 9922.1884765625 0.6522244806136571 -2 0.039600372314453125 4 Unmodified _PHTQRMNKL_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 6.2057823575117 0.2651744870083793 2 PV 2 8 10.969 0 0 0.97625 0 0 137.07864634201854 787.3741604588112 924.4528068008296 0 0 0 0 0 0 0 0 0 PV 0.97625 - 30 + NaN NaN 109604.2 NaN 4619 2291 6908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6913 39.16 NaN 197550 35 0 29065 0.261 + -1 VQCFHGFD 8 46 505.2136228311368 1008.4126927290736 2 505.2119140625 MULTI HCD FTMS 0 0 0 6908 46635.41015625 0.8849530922413995 2 -0.05297088623046875 5 Carbamidomethyl (C) _VQC(Carbamidomethyl (C))FHGFD_ REV__ENST00000590168.5_1_17:74470192-74470461:-|nuORF 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F}{[CP]|[EA]} 3 -1 8.9524 0 0 0.88777 0 0 643.316698142775 0 643.316698142775 0 4.348331157524969 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{[CP]|[EA]} 0.88777 - 20 NaN NaN 116213.6 NaN 4620 2291 6908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6914 39.163 NaN 148910 35 0 30741 0.261 + 28595 TQDIHDVL 8 38 470.74049717951283 939.4664414258257 2 470.74090576171875 MULTI HCD FTMS 0 0 0 6908 43320.2578125 0.09561095668116415 -6 0.14208602905273438 6 Unmodified _TQDIHDVL_ REV__ENSG00000185163|ENST00000397333|DDX51;REV__ENST00000329073.8_1_12:132625785-132627411:-|nuORF;REV__ENST00000545991.1_1_12:132625785-132626162:-|nuORF 11.640296217721598 0.50814828952472 2 V{I|L} 2 -1 20.969 0 0 2.232 0 0 709.3012562482437 0 709.3012562482437 0 13.979400086720375 0 0 0 0 0 0 0 V{I|L} 2.232 + + 2 NaN NaN 97717.5 NaN 4621 2291 6908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6916 39.168 NaN 121930 35 0 35742 0.327 -1 TCCSCTSL 8 31 458.66442677122524 915.3143006092505 2 458.66461181640625 MULTI HCD FTMS 0 0 0 6915 62151.37890625 0.6735457793453309 2 -0.052974700927734375 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))TC(Carbamidomethyl (C))CSCTSL_ ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENST00000479726.5_1_1:201952590-201965289:+|nuORF 0.6903765706972694 0.5409681170271811 2 R 1 -1 5.4846 0 0 0.5992 0 0 62.00184581227729 694.1681612604124 756.1700070726897 0 0 0 0 0 0 0 0 0 R 0.5992 - 2 + NaN NaN 100719.7 NaN 4622 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6917 39.173 NaN 437570 35 0 60838 0.261 + 11619 IYTSSVNRL 9 57 526.7904640151188 1051.5663750970375 2 526.7903442382812 MULTI HCD FTMS 0 0 0 6915 171692.6875 0.0451990782365001 -6 0.13539505004882812 2 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 76.82478488871298 0.006879825292024087 2 {I|L}YTSSVNR{I|L} 9 0 + 92.49 0 0 8.7954 8.7954 93.129 0 0 0 77.2729783057342 8.384767769392738 8.384767769392738 9.208187539523749 0 2.110924374808178 1.6989700043360187 0.8807196863200843 0 + + {I|L}YTSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVNR{I|L} 8.7954;7.9197;6.5137 +;-;+ + 148 + NaN NaN 153280.2 NaN 4623 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6918 39.176 NaN 106930 35 0 16495 0.263 -1 VYTRHMTWI 9 38 408.20617877439923 1221.5967069233977 3 408.20599365234375 MULTI HCD FTMS 0 0 0 6915 48568.34375 0.2766449919263736 22 -0.5459480285644531 3 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 10.799506525563784 0.2670509983294061 2 {I|L} 1 -1 19.604 0 0 1.6048 0 0 1090.5021767493727 0 1090.5021767493727 0 19.604093769761874 0 0 0 0.5 0 0 0 {I|L} 1.6048 + + 1 + NaN NaN 102031.1 NaN 4624 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6919 39.18 NaN 94867 35 0 8961.3 0.261 -1 GKYMCRII 8 39 500.2587852192573 998.5030175053146 2 500.2586975097656 MULTI HCD FTMS 0 0 0 6915 25488.1875 0.31991737913305357 6 -0.14865493774414062 4 Oxidation (M) _GKYM(Oxidation (M))CRII_ ENSG00000101019|ENST00000374385|UQCC1;ENST00000491040.5_1_20:33934876-33981976:-|nuORF;nc|ENSG00000101019|Q9NVA1-2|UQCC1;nc|ENSG00000101019|Q9NVA1-3|UQCC1;nc|ENSG00000101019|Q9NVA1-4|UQCC1;nc|ENSG00000101019|Q9NVA1-5|UQCC1 4.75600775471527 0.5349361699807423 2 A{I|L} 2 -1 16.454 0 0 1.6478 0 0 796.3694935529312 0 796.3694935529312 0 16.453650195120844 0 0 0 0 0 0 0 A{I|L} 1.6478 - 3 NaN NaN 91448.7 NaN 4625 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6920 39.183 NaN 91266 35 0 14129 0.261 + -1 YVMRTTTTI 9 29 551.2841345829398 1100.5537162326796 2 551.283935546875 MULTI HCD FTMS 0 0 0 6915 38709.2265625 0.3191707994831459 17 -0.39035797119140625 5 Oxidation (M) _YVM(Oxidation (M))RTTTTI_ REV__ENSG00000151150|ENST00000280772|ANK3 8.745405648335112 0.2847203663274469 2 TT{I|L} 3 -1 31.427 0 0 2.8555 0 0 767.3659420801708 0 767.3659420801708 0 31.42667503568731 0 0 0 0.5 0 0.5 0 TT{I|L} 2.8555 + + 4 NaN NaN 95682.8 NaN 4626 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6921 39.186 NaN 100200 35 0 14543 0.261 + 2130 DFRAIQDL 8 41 489.25694732295705 976.4993417127141 2 489.2687683105469 MULTI HCD FTMS 0 0 0 6915 12098.904296875 0.28414318018002566 22 -0.5459480285644531 6 Unmodified _DFRAIQDL_ REV__tr|U7T1Z7|U7T1Z7_FUSNUDUF3290domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00700PE=4SV=1 7.289230182591677 0.5311777711368266 2 [YV]S 3 -1 27.447 0 0 2.8108 0 0 0 624.3126711407016 624.3126711407016 7.983324797206279 0 0 0 0 0 1.6989700043360187 0 0 [YV]S 2.8108 - 17 NaN NaN 111671 NaN 4627 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6922 39.19 NaN 90946 35 0 5720.5 0.262 + -1 MLYVYYKFWYF 11 35 546.9277673317852 1637.7614725955555 3 547.2630615234375 MULTI HCD FTMS 0 0 0 6915 21651.94140625 0.5059026418228532 -7 0.16521453857421875 7 Oxidation (M) _M(Oxidation (M))LYVYYKFWYF_ REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF;REV__ENST00000509649.5_1_5:21459626-21462031:+|nuORF 4.715918219556657 0.3982382512160552 2 Y{M(Oxidation (M))|F} 2 -1 30.217 0 0 1.845 0 0 1309.6196096578585 0 1309.6196096578585 0 7.028937514676485 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F} 1.845 + + 7 + NaN NaN 104743.9 NaN 4628 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6923 39.193 NaN 97042 35 0 7799.3 0.263 + 34853 YRYFNPRVT 9 47 405.8786832808413 NaN 0 405.8668212890625 PEAK HCD FTMS 0 0 0 6915 2763.47265625 0.2788481028536889 -4 0.08913803100585938 8 Unmodified _YRYFNPRVT_ ENST00000528812.5_1_8:11660522-11660831:+|nuORF 2.282774691075616 0.2841848346883669 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108540.4 NaN 4629 2292 6915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6925 39.198 NaN 84601 35 0 10855 0.327 + 2380 DPGHPDDPL 9 32 481.71509706442873 961.4156411956575 2 481.7142028808594 MULTI HCD FTMS 0 0 0 6924 42595.16015625 0.8712563245689905 -4 0.09257125854492188 1 Unmodified _DPGHPDDPL_ ENSG00000179094|ENST00000317276|PER1 30.636539890814138 0.10832830463492794 2 DP{I|L} 3 6 39.253 0 0 4.0828 0 0 618.2393099853957 0 618.2393099853957 0 32.658715643802765 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + DP{I|L} 4.0828 + + 27 NaN NaN 97258.5 NaN 4630 2293 6924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6926 39.203 NaN 135850 35 0 12898 0.261 + 3667 ELLPNSPSGG 10 54 485.7456274929599 969.4767020527198 2 486.2342224121094 MULTI HCD FTMS 0 0 0 6924 4725.30859375 0.17282035878312182 7 -0.16146469116210938 2 Unmodified _ELLPNSPSGG_ REV__ENSG00000173838|ENST00000311269|MARCHF10 8.745405648335112 0.42901288225909884 2 A{M(Oxidation (M))|F} 2 -1 29.776 0 0 3.0714 0 0 733.3940889929527 0 733.3940889929527 0 11.359921914233905 0 0 0 0.8807196863200843 0 0 0 A{M(Oxidation (M))|F} 3.0714 - 137 + NaN NaN 106179.5 NaN 4631 2293 6924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6927 39.206 NaN 215900 35 0 36915 0.261 + -1 GTAAVCCDR 9 40 505.2136228311368 1008.4126927290736 2 505.7168884277344 MULTI HCD FTMS 0 0 0 6924 37412.00390625 0.8176789735916481 -1 0.029842376708984375 3 2 Carbamidomethyl (C) _GTAAVC(Carbamidomethyl (C))C(Carbamidomethyl (C))DR_ REV__NEURL4|p.G179C|1|0.46|ENSG00000215041|chr17:7327632-7327632|C/A|missense_variant 4.3292370932331545 0.3181982124262546 2 S[DP]V 4 -1 13.188 0 0 1.3078 0 0 0 607.1853790948542 607.1853790948542 2.730012720637374 0 0 0 0 0 0 0 0 S[DP]V 1.3078 - 12 + NaN NaN 124972.2 NaN 4632 2293 6924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6928 39.21 NaN 85462 35 0 13261 0.261 + 3445 EFRDNEAL 8 31 497.2356411407047 992.4567293482094 2 497.2353820800781 MULTI HCD FTMS 0 0 0 6924 32001.1796875 0.8824646138487116 1 -0.02313232421875 4 Unmodified _EFRDNEAL_ REV__ENSG00000163913|ENST00000348417|IFT122;REV__ENST00000506507.5_1_3:129168750-129233481:+|nuORF;REV__nc|ENSG00000163913|Q9HBG6-10|IFT122;REV__nc|ENSG00000163913|Q9HBG6-11|IFT122;REV__nc|ENSG00000163913|Q9HBG6-3|IFT122;REV__nc|ENSG00000163913|Q9HBG6-4|IFT122;REV__nc|ENSG00000163913|Q9HBG6-5|IFT122;REV__nc|ENSG00000163913|Q9HBG6-6|IFT122;REV__nc|ENSG00000163913|Q9HBG6-7|IFT122;REV__nc|ENSG00000163913|Q9HBG6-8|IFT122;REV__nc|ENSG00000163913|Q9HBG6-9|IFT122 7.910154910731844 0.5302565402355366 2 A{I|L} 2 -1 24.464 0 0 2.465 0 0 790.3246058374035 0 790.3246058374035 0 3.4948500216800937 0 0 0 0.5 0 0 0 A{I|L} 2.465 + + 9 NaN NaN 91705.9 NaN 4633 2293 6924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6929 39.213 NaN 65355 35 0 6223 0.261 + 34525 YPGQPHPAL 9 42 490.25345391007306 978.4923548869461 2 490.25347900390625 MULTI HCD FTMS 0 0 0 6924 18536.666015625 0.07611773275211604 10 -0.21664047241210938 5 Unmodified _YPGQPHPAL_ ENSG00000114315|ENST00000232424|HES1 28.486842064014134 0.11819662193267319 2 YP 2 7 36.995 0 0 3.7808 0 0 0 715.3526161359653 715.3526161359653 21.53720958383822 0 0 0 0 0.3807196863200844 1.2218487496163564 0 0 + YP 3.7808 + + 14 + NaN NaN 107381.2 NaN 4634 2293 6924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6930 39.216 NaN 25915 35 0 4593.7 0.261 + 12525 KRYSPQFHI 9 21 588.3195214188075 1174.624489904415 2 588.31982421875 MULTI HCD FTMS 0 0 0 6924 11447.5986328125 0.3062772361167329 3 -0.06274032592773438 6 Unmodified _KRYSPQFHI_ REV__ENST00000524461.1_1_11:16769614-16769671:+|nuORF 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89501.6 NaN 4635 2293 6924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6932 39.221 NaN 1623300 35 0 417670 0.327 + 19192 NIEGPDAKL 9 69 478.7560145821947 955.4974762311895 2 478.75616455078125 MULTI HCD FTMS 0 0 0 6931 1261320.875 0.38361801335508744 5 -0.11542129516601562 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 139.37808420243823 3.622972506003875E-05 2 {[QV]|[N{I|L}]|[RA]|[KV]}EGPDAK{I|L} 9 0 + 114.47 0 0 11.98 11.98 97.262 0 0 0 20.563025007672877 16.478174818886373 16.478174818886373 17.800084529637985 0 2.579689690656103 2 0.899649864804614 2.0114393726401687 + + {[QV]|[N{I|L}]|[RA]|[KV]}EGPDAK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EGPS{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}QGPDAK{I|L};N{I|L}EGPDAK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EGPS{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]GPDAK{I|L};{[QN]|[E{I|L}]|[KN]}NGPDAK{I|L};{NN|[MP]|[D{I|L}]|[EV]}QGPS{I|L}N{I|L};{[QN]|[E{I|L}]|[KN]}GGGPDAK{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]GPS{I|L}N{I|L} 11.98;10.117;9.8281;9.6949;9.1536;8.8644;8.2918;7.9652;7.3281;7.0015 +;-;-;+;-;-;-;-;-;- + 547 NaN NaN 332300.8 NaN 4636 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6933 39.226 NaN 244300 35 0 57523 0.261 + 9054 HPESHVLVL 9 49 515.7878313925326 1029.561109851865 2 515.7876586914062 MULTI HCD FTMS 0 0 0 6931 85853.140625 0.8560626686493863 -2 0.052974700927734375 2 Unmodified _HPESHVLVL_ ENSG00000128274|ENST00000642412|A4GALT 34.10243960390752 0.09241788333544565 2 V{I|L}V{I|L} 4 5 35.433 0 0 3.4416 0 0 587.2455921857437 0 587.2455921857437 0 10.371381606472596 0 0 0 0.5 0 0 0 + V{I|L}V{I|L} 3.4416 + + 49 NaN NaN 119927.7 NaN 4637 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6934 39.229 NaN 373810 35 0 52683 0.261 + 11909 KFIDTTSKF 9 60 543.7950986694144 1085.5756444056287 2 543.7952270507812 MULTI HCD FTMS 0 0 0 6931 218944.96875 0.026242073710818766 -7 0.16521835327148438 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 135.86342318000737 0.0002493800389041242 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 103.73 0 0 9.5553 9.5553 95.469 0 0 0 6.363781092484686 67.83498214479485 6.363781092484686 12.658467447160987 0 2.7614393726401687 0 1.7491348669726232 1.4802046884880937 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}K{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTS{M(Oxidation (M))|F}K;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}K;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TS{M(Oxidation (M))|F}K;[KS][DV][Y{I|L}]SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[RH]{[HG]|PP}ASK{M(Oxidation (M))|F} 9.5553;8.3893;5.8171;4.857;4.651;4.4353;3.635;3.2692;3.2492;3.0043 +;-;-;-;-;-;-;-;-;- + 835 NaN NaN 143071.9 NaN 4638 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6935 39.233 NaN 122080 35 0 10812 0.261 + 20831 PHTQRMNKL 9 37 562.8053843575852 NaN 0 562.7946166992188 PEAK HCD FTMS 0 0 0 6931 15212.8427734375 1 0 0 4 Unmodified _PHTQRMNKL_ ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 6.2057823575117 0.2651744870083793 2 PG 2 8 10.969 0 0 0.97625 0 0 137.07798677966497 829.4138431027727 966.4918298824377 0 0 0 0 0 0 0 0 0 PG 0.97625 - 15 + NaN NaN 102374.6 NaN 4639 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6936 39.236 NaN 85430 35 0 22390 0.261 + 3191 ECWEFYSAI 9 31 574.2414857615485 1146.4684185898968 2 574.2416381835938 MULTI HCD FTMS 0 0 0 6931 36841.34375 0.8722410753607431 -1 0.02313232421875 5 Unmodified _ECWEFYSAI_ ENST00000374024.3_1_1:27721341-27721638:+|nuORF 11.640296217721598 0.25978676193971967 2 VEA{I|L} 4 6 41.186 0 0 3.5924 0 0 716.2241078107437 0 716.2241078107437 0 35.70107520596089 0 0 0 0.5 0 0.4247425010840047 0 VEA{I|L} 3.5924 - 14 NaN NaN 96402.8 NaN 4640 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6937 39.239 NaN 20154 35 0 3298 0.261 + -1 RQRAHKECY 9 21 624.304220191457 NaN 0 624.3046264648438 PEAK HCD FTMS 0 0 0 6931 3741.42138671875 0.1887216093644001 4 -0.09568023681640625 6 Carbamidomethyl (C) _RQRAHKEC(Carbamidomethyl (C))Y_ REV__ENSG00000120913|ENST00000409417|PDLIM2;REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92661.3 NaN 4641 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6938 39.243 NaN 46838 35 0 7593.5 0.262 -1 DTEMTTAKF 9 36 530.2366627166961 1058.458772500192 2 530.2364501953125 MULTI HCD FTMS 0 0 0 6931 15375.896484375 0.34054290240009055 14 -0.31427001953125 7 Oxidation (M) _DTEM(Oxidation (M))TTAKF_ ENSG00000150773|ENST00000280350|PIH1D2;PIH1D2|p.I302M|1|0.53|ENSG00000150773|chr11:112067913-112067913|G/C|missense_variant 6.723162845929126 0.3000504726104499 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 89534.8 NaN 4642 2294 6931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6940 39.248 NaN 126060 35 0 12732 0.327 + 21711 QADFLDKQM 9 40 556.2582716471417 1110.5019903610832 2 556.2581787109375 MULTI HCD FTMS 0 0 0 6939 74199.1953125 0.9290266458327261 5 -0.111907958984375 1 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 41.95555342248728 0.056367691549927025 2 [QA]D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 9 3 [QA] + + 51.643 2.5084 1.2599 4.6504 4.6504 61.78 0 0 0 0 34.47576016777987 0 0 0 1.2614393726401687 0 0.3054621874040891 0.4247425010840047 [QA]D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 4.6504 - 88 + NaN NaN 98074 NaN 4643 2295 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6941 39.252 NaN 116910 35 0 28119 0.261 + 34131 YNWHKTLSI 9 36 581.3062047360366 NaN 0 581.29345703125 PEAK HCD FTMS 0 0 0 6939 2982.212646484375 0.6155467190207 1 -0.01318359375 2 Unmodified _YNWHKTLSI_ REV__ENST00000441724.1_1_1:6297183-6297874:+|nuORF 4.3292370932331545 0.2742679634796037 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}E 5 -1 12.218 0 0 1.0528 0 0 147.09523569481786 429.2270601861938 576.3222958810117 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}E 1.0528 - 18 + NaN NaN 106391.4 NaN 4644 2295 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6942 39.256 NaN 77346 35 0 13769 0.264 -1 0 37 441.78801501187917 881.5614770905584 2 441.7877502441406 MULTI HCD FTMS 0 0 0 6939 26417.849609375 0.20990500010056118 10 -0.20626068115234375 3 NaN NaN 2 N 1 -1 5.4846 0 0 0.62214 0 0 183.1645016142433 581.3441139352514 764.5086155494946 0 0 0 0 0 0 0 0 0 N 0.62214 - 4 + NaN NaN 90970 NaN 4645 2295 6939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6944 39.261 NaN 147380 35 0 11515 0.327 -1 0 44 419.3162578408133 418.3089813742133 1 419.3155822753906 MULTI HCD FTMS 0 0 0 6943 69837.8984375 0.429690165509947 504 -13.004322052001953 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 4.0615 0 0 253.23003042382112 0 253.23003042382112 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 4.0615 - 2 + NaN NaN 101676 NaN 4646 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6945 39.265 NaN 58086 35 0 6090.4 0.261 + 3398 EEWLVNYQ 8 27 540.7540128961093 1079.4934728590185 2 540.769775390625 MULTI HCD FTMS 0 0 0 6943 2918.166015625 0.3642698364614577 3 -0.07581329345703125 2 Unmodified _EEWLVNYQ_ REV__ENSG00000125755|ENST00000245934|SYMPK;REV__nc|ENSG00000125755|Q92797-2|SYMPK 2.302733041254933 0.5385759549224092 2 TEYAV{[{M(Oxidation (M))|F}H]|[RQ]} 7 -1 32.963 0 0 3.0536 0 0 214.06179902013952 0 214.06179902013952 0 19.775844697417853 0 0 0 0 0 0.4247425010840047 0 TEYAV{[{M(Oxidation (M))|F}H]|[RQ]} 3.0536 - 57 + NaN NaN 96273.3 NaN 4647 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6946 39.269 NaN 171010 35 0 24884 0.261 -1 VTQAMHCY 8 42 505.2136228311368 1008.4126927290736 2 505.71832275390625 MULTI HCD FTMS 0 0 0 6943 17163.45703125 0.37512553360586814 2 -0.056072235107421875 3 Carbamidomethyl (C) _VTQAMHC(Carbamidomethyl (C))Y_ ENSG00000171408|ENST00000308191|PDE7B;ENSG00000205268|ENST00000401827|PDE7A;ENST00000518667.1_1_8:66643803-66660021:-|nuORF;nc|ENSG00000205268|Q13946-2|PDE7A;nc|ENSG00000205268|Q13946-3|PDE7A 2.302733041254933 0.5385759549224092 2 W 1 -1 4.6041 0 0 0.45657 0 0 423.1359726136423 396.18835431686034 819.3243269305026 0 0 0 0 0 0 0 0 0 W 0.45657 - 1 + NaN NaN 114097.3 NaN 4648 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6947 39.272 NaN 58968 35 0 5906.9 0.261 -1 TATKIEITM 9 35 512.2731389515716 1022.5317249699432 2 512.2730712890625 MULTI HCD FTMS 0 0 0 6943 26474.02734375 0.17898542151168165 22 -0.5458984375 4 Oxidation (M) _TATKIEITM(Oxidation (M))_ ENSG00000110172|ENST00000320585|CHORDC1;nc|ENSG00000110172|Q9UHD1-2|CHORDC1 31.26834338654808 0.10542797264966089 2 {I|L}T{M(Oxidation (M))|F} 3 -1 41.242 0 0 4.0333 0 0 643.3550282209 0 643.3550282209 0 35.75765943524473 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {I|L}T{M(Oxidation (M))|F} 4.0333 + + 16 NaN NaN 87511.1 NaN 4649 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6948 39.276 NaN 47651 35 0 5479 0.261 -1 HPTGKMFIL 9 37 530.2863535547688 1058.5581541763374 2 530.2860717773438 MULTI HCD FTMS 0 0 0 6943 15479.5068359375 0.07212669558320578 -24 0.5887908935546875 5 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 3.944395688203298 0.32111559684428237 2 {I|L} 1 -1 5.4846 0 0 0.51812 0 0 570.2843332308281 372.15778528385005 942.4421185146782 0 0 0 0 0 0 0 0 0 {I|L} 0.51812 + + 4 + NaN NaN 95031.3 NaN 4650 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6949 39.279 NaN 41250 35 0 5492.9 0.261 + 8892 HPASDKIEAYM 11 23 631.2977510056597 1260.5809490781194 2 631.2971801757812 MULTI HCD FTMS 0 0 0 6943 20687.3359375 0.2132754209726145 -6 0.1388702392578125 6 Unmodified _HPASDKIEAYM_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 5.198440282359431 0.39612207336387734 2 HP 2 9 25.969 0 0 2.0601 0 0 0 1023.4462374322876 1023.4462374322876 18.979400086720375 0 0 0 0 0.5 0 0 0 + HP 2.0601 + + 4 + NaN NaN 97349.9 NaN 4651 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6950 39.282 NaN 45389 35 0 9850.1 0.261 + 3214 EDFIETLKSI 10 33 597.8154127553832 NaN 0 597.8141479492188 PEAK HCD FTMS 0 0 0 6943 19253.283203125 0.12523448241446683 -8 0.18172073364257812 7 Unmodified _EDFIETLKSI_ tr|U7SU79|U7SU79_FUSNUasparaginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01335PE=3SV=1 2.735195868890462 0.33784334045437464 2 T 1 9 4.6041 0 0 0.38573 0 0 920.0521073937758 169.4953554742797 1089.5474628680556 0 0 0 0 0 0 0 0 0 + T 0.38573 + + 2 + NaN NaN 89124 NaN 4652 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6951 39.286 NaN 73066 35 0 12340 0.261 + 23032 RCYSDFCVL 9 20 553.2456546852386 1104.4767564372771 2 553.246826171875 MULTI HCD FTMS 0 0 0 6943 23990.91796875 0.7424773495855259 -2 0.039608001708984375 8 Unmodified _RCYSDFCVL_ ENST00000592087.1_1_19:36980552-36981209:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94482.8 NaN 4653 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6952 39.289 NaN 39933 35 0 7065.4 0.264 + 14889 LKQPGRREVF 10 23 410.5747841870318 NaN 0 410.6986389160156 PEAK HCD FTMS 0 0 0 6943 2423.27783203125 1 0 0 9 Unmodified _LKQPGRREVF_ ENSG00000182580|ENST00000330394|EPHB3 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105511.1 NaN 4654 2296 6943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6954 39.294 NaN 235780 35 0 25989 0.327 + 99 ADKMDMSL 8 48 492.7042973904869 983.3940418477738 2 492.70428466796875 MULTI HCD FTMS 0 0 0 6953 153546.59375 0.8216290072777049 -7 0.17193603515625 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 47.594388314883695 0.1426583598120141 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5 3 42.792 0 0 4.3514 0 0 356.16966445136876 0 356.16966445136876 0 10.651668842475033 0 0 0 0.8807196863200843 0 0.3807196863200844 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 4.3514 + + 70 NaN NaN 126186.6 NaN 4655 2297 6953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6955 39.298 NaN 275330 35 0 29687 0.261 -1 MPSPVSPKL 9 53 486.2650710523683 970.5155891715366 2 486.2740173339844 MULTI HCD FTMS 0 0 0 6953 61013.6953125 1 0 0 2 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 32.78568957990786 0.09846250359632436 2 ATQ{M(Oxidation (M))|F}AT[{I|L}A] 8 -1 40.935 0 0 4.2179 0 0 149.08790528742003 0 149.08790528742003 0 12.149640954996954 0 0 0 0.3182503180159344 0 0.7742275032520141 0.7614393726401688 ATQ{M(Oxidation (M))|F}AT[{I|L}A] 4.2179 - 241 + NaN NaN 122488.2 NaN 4656 2297 6953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6956 39.302 NaN 200030 35 0 68893 0.261 + 8894 HPASDKIEAYM 11 32 421.2008859406431 1260.5808284221293 3 421.20135498046875 MULTI HCD FTMS 0 0 0 6953 65292.109375 0.5306495667950402 -4 0.09580612182617188 3 Unmodified _HPASDKIEAYM_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 9.764250979337305 0.37200617284565546 2 YM 2 9 30.217 0 0 2.397 0 0 948.4663892021925 0 948.4663892021925 0 27.74227503252014 0 0 0 0.9247425010840047 0 0 0 + YM 2.397 + + 8 NaN NaN 107730.3 NaN 4657 2297 6953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6957 39.305 NaN 189380 35 0 27116 0.261 -1 FYAALLFCLSP 11 46 434.5578098121068 1300.6516000365204 3 434.5580749511719 MULTI HCD FTMS 0 0 0 6953 35967.78125 0.9430916725568808 -1 0.0330657958984375 4 Carbamidomethyl (C) _FYAALLFC(Carbamidomethyl (C))LSP_ ENSG00000060642|ENST00000674202|PIGV 2.843284757254958 0.4064509854383032 2 {I|L}D{M(Oxidation (M))|F}[PS] 5 -1 26.026 0 0 2.001 0 0 723.379398617374 0 723.379398617374 0 22.04628427264403 0 0 0 0.3807196863200844 0 0 0 {I|L}D{M(Oxidation (M))|F}[PS] 2.001 - 36 NaN NaN 117612.9 NaN 4658 2297 6953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6958 39.309 NaN 46363 35 0 4083.5 0.261 + 18641 MYDDIAHS 8 32 476.1987022477909 NaN 0 476.19921875 PEAK HCD FTMS 0 0 0 6953 10310.0693359375 0.5863080022253857 -4 0.09580612182617188 5 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 2 D 1 7 3.9794 0 0 0.41872 0 0 408.15068711101304 424.1837252252563 832.3344123362693 0 0 0 0 0 0 0 0 0 + D 0.41872 + + 2 + NaN NaN 83264.7 NaN 4659 2297 6953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6959 39.312 NaN 25798 35 0 8238.3 0.261 + 33126 YEACYILYY 9 13 600.7694702148438 NaN 0 600.7694702148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YEACYILYY_ REV__ENSG00000277893|ENST00000622030|SRD5A2 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89988.4 NaN 4660 2297 6953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6961 39.317 NaN 5494200 35 0 730600 0.327 + 11620 IYTSSVNRL 9 100 526.7904640151188 1051.5663750970375 2 526.7908325195312 MULTI HCD FTMS 0 0 0 6960 3798588.25 1 0 0 1 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 152.88595553498965 5.775426743015152E-06 2 {I|L}YTSSVNR{I|L} 9 0 + 104.11 0 0 9.9008 9.9008 91.758 0 0 0 21.882484182756485 5.593859345357188 5.593859345357188 5.593859345357188 0 2.6791746928241125 1.6989700043360187 1.4749073637206092 0 + + {I|L}YTSSVNR{I|L};[Y{I|L}]TSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVGGR{I|L};[Y{I|L}]TSS[RN]V{I|L};[YT]{I|L}SSVNR{I|L};[Y{I|L}]TST[QA]R{I|L};[YT]{I|L}SSVGGR{I|L};{[MG]|[TS]}[Y{I|L}]SVNR{I|L};[YT]{I|L}SS[RN]V{I|L} 9.9008;9.3689;9.0252;8.4932;7.2609;6.841;6.2739;5.9653;5.0907;4.733 +;+;-;-;-;-;-;-;-;- + 3566 + NaN NaN 923586.4 NaN 4661 2298 6960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6962 39.321 NaN 568610 35 0 139980 0.261 + 9363 HPSVDSSVL 9 39 470.74049717951283 939.4664414258257 2 470.7403564453125 MULTI HCD FTMS 0 0 0 6960 429681.6875 0.9483387053711803 1 -0.019741058349609375 2 Unmodified _HPSVDSSVL_ ENSG00000134107|ENST00000256495|BHLHE40 28.486842064014134 0.11819662193267319 2 SV{I|L} 3 6 39.693 0 0 4.225 0 0 622.2720814435562 0 622.2720814435562 0 25.880456295278407 0 0 0 0.5 0 0.8494850021680094 0 + SV{I|L} 4.225 + + 12 NaN NaN 167391.2 NaN 4662 2298 6960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6963 39.325 NaN 111670 35 0 14894 0.261 + 1568 AYVHMVTHF 9 47 560.7657330135318 1119.5169130938634 2 560.7657470703125 MULTI HCD FTMS 0 0 0 6960 36260.24609375 0.03220188302807544 90 -2.2766456604003906 3 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 50.855029805455786 0.030374663808198754 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VT{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 51.888 0 0 4.6349 4.6349 88.93 0 0 0 35.47369639574029 5.179921580021087 5.179921580021087 17.165762445130497 0 1.829689690656103 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VT{[{M(Oxidation (M))|F}H]|[RQ]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[MN]A[PA]{[{M(Oxidation (M))|F}H]|[RQ]} 4.6349;3.1015 +;- + 114 + NaN NaN 98816.4 NaN 4663 2298 6960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6964 39.328 NaN 98879 35 0 13417 0.264 + -1 PTSTLCPCVML 11 42 407.8597054224413 1220.557286867524 3 408.2066345214844 MULTI HCD FTMS 0 0 0 6960 4890.87744140625 0.8938310104088102 2 -0.042652130126953125 4 Carbamidomethyl (C) _PTSTLCPC(Carbamidomethyl (C))VML_ REV__ENST00000373316.4_1_X:77369323-77369359:+|nuORF 1.4551175022131473 0.41253901545122046 2 {I|L} 1 -1 13.495 0 0 1.1056 0 0 1089.4626041056083 0 1089.4626041056083 0 6.505149978319906 0 0 0 0 0 0 0 {I|L} 1.1056 + + 13 + NaN NaN 99480.8 NaN 4664 2298 6960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6965 39.332 NaN 35707 35 0 5660.7 0.261 + 17824 MGNHCSHM 8 27 458.66442677122524 915.3143006092505 2 458.6645812988281 MULTI HCD FTMS 0 0 0 6960 10750.529296875 0.11650543819085445 8 -0.16907882690429688 5 Unmodified _MGNHCSHM_ ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-3|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88340.8 NaN 4665 2298 6960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6967 39.337 NaN 289820 35 0 57573 0.327 -1 DMHTEVTTL 9 48 531.7422678049099 1061.4699826766198 2 531.74169921875 MULTI HCD FTMS 0 0 0 6966 167693.796875 0.20581729602741508 -6 0.13855361938476562 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 32.30548876998284 0.10066689432505688 2 VTT{I|L} 4 -1 50.433 0 0 4.7512 0 0 629.2120838849625 0 629.2120838849625 0 36.16827851303363 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.7512 + + 41 NaN NaN 123042.7 NaN 4666 2299 6966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6968 39.341 NaN 151980 35 0 31579 0.261 + 30559 VNLALPQR 8 41 455.7771051551416 909.5396573770832 2 455.7770080566406 MULTI HCD FTMS 0 0 0 6966 46117.43359375 0.7382608029003002 1 -0.02291107177734375 2 Unmodified _VNLALPQR_ REV__ENSG00000143621|ENST00000361891|ILF2 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.4402 0 0 744.4935738583317 0 744.4935738583317 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4402 - 10 + NaN NaN 106057.5 NaN 4667 2299 6966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6969 39.345 NaN 92015 35 0 9440.8 0.261 + -1 DKSCAGDPI 9 44 481.71509706442873 961.4156411956575 2 481.7148132324219 MULTI HCD FTMS 0 0 0 6966 34181.359375 0.6991574964993897 2 -0.0390777587890625 3 Carbamidomethyl (C) _DKSC(Carbamidomethyl (C))AGDPI_ REV__ENSG00000083454|ENST00000225328|P2RX5;REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF;REV__nc|ENSG00000083454|Q93086-1|P2RX5;REV__nc|ENSG00000083454|Q93086-2|P2RX5;REV__nc|ENSG00000083454|Q93086-4|P2RX5;REV__nc|ENSG00000083454|Q93086-5|P2RX5;REV__nc|ENSG00000083454|Q93086|P2RX5 13.90604991867851 0.24021115267848145 2 DP{I|L} 3 -1 35.005 0 0 3.641 0 0 618.2391224591812 0 618.2391224591812 0 21.730078252872502 0 0 0 0.5 0 0.3807196863200844 0 DP{I|L} 3.641 + + 30 NaN NaN 98361.6 NaN 4668 2299 6966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6970 39.348 NaN 203600 35 0 24612 0.261 + 23165 RFKEANNFL 9 56 569.8038710960735 1137.593189258947 2 570.3047485351562 MULTI HCD FTMS 0 0 0 6966 38583.12890625 0.36415115194134934 -3 0.07581329345703125 4 Unmodified _RFKEANNFL_ ENSG00000147604|ENST00000352983|RPL7 19.256988751693697 0.19398022840297344 2 [R{M(Oxidation (M))|F}]K[WQ]N{M(Oxidation (M))|F} 7 4 19.269 0 0 1.6939 0 0 0 128.13031735419966 128.13031735419966 12.27970387566863 0 0 0 0 0.3807196863200844 0 0 0.4247425010840047 [R{M(Oxidation (M))|F}]K[WQ]N{M(Oxidation (M))|F} 1.6939 - 32 NaN NaN 128732.7 NaN 4669 2299 6966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6971 39.351 NaN 60508 35 0 14202 0.261 + 17732 MDEEIVEL 8 26 489.22897106836314 NaN 0 489.22882080078125 PEAK HCD FTMS 0 0 0 6966 12652.8427734375 0.7287820898121564 -2 0.04274749755859375 5 Unmodified _MDEEIVEL_ tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110241.1 NaN 4670 2299 6966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6972 39.355 NaN 77340 35 0 8486 0.261 + 29664 VARPAEPA 8 35 405.7264828693132 NaN 0 405.5018005371094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VARPAEPA_ ENSG00000232434|ENST00000436881|AJM1 0.6903765706972694 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 8 5.4846 0 0 0.67757 0 0 100.13972003374518 546.2606905572874 646.4004105910326 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.67757 - 1 + NaN NaN 87295.1 NaN 4671 2299 6966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6974 39.36 NaN 362420 35 0 88548 0.327 + 19193 NIEGPDAKL 9 47 478.7560145821947 955.4974762311895 2 478.7560729980469 MULTI HCD FTMS 0 0 0 6973 274694.53125 0.08354556913016443 11 -0.2653045654296875 1 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 64.9267550582149 0.010729834900650251 2 {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 9 0 + 82.923 0 0 8.6786 8.6786 89.065 0 0 0 1.588709367037282 1.588709367037282 1.588709367037282 1.588709367037282 0 2.3494850021680094 2 0 1.055462187404089 + + {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L};N{I|L}EG[DP]AK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EG[PS]{I|L}GG{I|L};{[SA]|[TG]}[TP]G[DP]AK{I|L};{[SA]|[TG]}[TP]G[PS]{I|L}N{I|L} 8.6786;8.5123;7.4925;6.5288;3.3637;2.5761 +;+;-;-;-;- + 157 NaN NaN 137800.7 NaN 4672 2300 6973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6975 39.364 NaN 308100 35 0 45975 0.261 + 9055 HPESHVLVL 9 62 515.7878313925326 1029.561109851865 2 515.7879638671875 MULTI HCD FTMS 0 0 0 6973 84605.0234375 0.843617386828126 4 -0.07809829711914062 2 Unmodified _HPESHVLVL_ ENSG00000128274|ENST00000642412|A4GALT 28.486842064014134 0.11819662193267319 2 VDC{I|L}V{I|L} 6 6 45.737 0 0 4.4424 0 0 369.20079238105626 0 369.20079238105626 0 7.940228147639203 0 0 0 0.3807196863200844 0 0.7059771852360797 0 VDC{I|L}V{I|L} 4.4424 - 163 NaN NaN 122511.2 NaN 4673 2300 6973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6976 39.367 NaN 161470 35 0 13284 0.261 + -1 MLYVYYKFWYF 11 53 546.9277673317852 1637.7614725955555 3 546.9275512695312 MULTI HCD FTMS 0 0 0 6973 25008.18359375 0.4681604776482283 3 -0.05517578125 3 Oxidation (M) _M(Oxidation (M))LYVYYKFWYF_ REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF;REV__ENST00000509649.5_1_5:21459626-21462031:+|nuORF 4.715918219556657 0.3982382512160552 2 Y{M(Oxidation (M))|F} 2 -1 24.776 0 0 1.5128 0 0 1309.6213098140593 0 1309.6213098140593 0 0.08355938871737578 0 0 0 0.3807196863200844 0 0 0 Y{M(Oxidation (M))|F} 1.5128 + + 50 NaN NaN 105591.6 NaN 4674 2300 6973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6977 39.371 NaN 38056 35 0 3002.1 0.261 -1 0 34 624.3514464282026 1870.0325098848077 3 624.351806640625 MULTI HCD FTMS 0 0 0 6973 27853.884765625 0.8091276628917332 -9 0.21443557739257812 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92896.8 NaN 4675 2300 6973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6979 39.376 NaN 6897500 35 0 809910 0.327 + 11910 KFIDTTSKF 9 113 543.7950986694144 1085.5756444056287 2 543.7955932617188 MULTI HCD FTMS 0 0 0 6978 8343280 1 0 0 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 162.31443362245884 8.008138431551248E-09 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 109.63 0 0 10.099 10.099 91.796 0 0 0 5.404353461290114 5.404353461290114 5.404353461290114 5.404353461290114 0 3.0114393726401687 0 1.7196100389531246 1.372363747448347 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}ESTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}ESTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTS{M(Oxidation (M))|F}K;[Y{I|L}]N{I|L}TTSK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KTTSK{M(Oxidation (M))|F} 10.099;9.6008;9.512;8.8134;8.3973;7.9376;7.8488;7.1121;6.763;6.6523 +;+;-;-;-;-;-;-;-;- + 7809 NaN NaN 668674.8 NaN 4676 2301 6978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6980 39.38 NaN 237170 35 0 34572 0.261 + 17855 MIANDVHTL 9 58 515.2553988039168 1028.4962446746335 2 515.2553100585938 MULTI HCD FTMS 0 0 0 6978 89940.484375 1 0 0 2 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 72.96794272382148 0.008127836904478181 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVH[{I|L}T] 9 0 + 78.285 0 0 7.6116 7.6116 91.385 0 0 0 70.8379001364149 10.246586506634472 10.246586506634472 9.208187539523749 0 1.9049471895720984 2 1.4163865622122673 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ANDVH[{I|L}T];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AGGDVH[{I|L}T];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AND[HT][{I|L}V];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AH[{I|L}T];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AGGD[HT][{I|L}V];[QT]{I|L}CDVH[{I|L}T];[QT]{I|L}CD[HT][{I|L}V] 7.6116;6.7163;5.5851;5.4482;4.6898;3.3013;1.2748 +;-;-;-;-;-;- + 162 + NaN NaN 115890.2 NaN 4677 2301 6978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6981 39.384 NaN 129660 35 0 8081.5 0.261 -1 QADFLDKQM 9 52 556.2582716471417 1110.5019903610832 2 556.2582397460938 MULTI HCD FTMS 0 0 0 6978 61721.7890625 0.7728006540506162 11 -0.282257080078125 3 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 36.506200033944 0.08138327636155518 2 [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F} 9 -1 + 56.749 0 0 5.1102 5.1102 84.485 0 0 0 33.79039059593687 16.478174818886373 16.478174818886373 4.771212547196626 0 0.3807196863200844 0 0 0.6109243748081782 [QA]D{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};E{[QG]|[NA]}{M(Oxidation (M))|F}{I|L}DKQ{M(Oxidation (M))|F};[QA]D{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};E{[QG]|[NA]}{M(Oxidation (M))|F}{I|L}DK[AG]{M(Oxidation (M))|F};[QA]D{[C(Carbamidomethyl (C))E]|[WC]}[K{I|L}]T{M(Oxidation (M))|F} 5.1102;4.6806;3.9663;3.5367;1.9045 +;-;-;-;- + 135 + NaN NaN 100108.9 NaN 4678 2301 6978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6982 39.387 NaN 120510 35 0 10368 0.261 + 9469 HPVSREWTL 9 37 562.7957071357245 1123.5768613382488 2 562.7947387695312 MULTI HCD FTMS 0 0 0 6978 42885.9921875 0.038411047533299325 35 -0.89739990234375 4 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 2 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3747354130503 787.3747354130503 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 21 + NaN NaN 104227.5 NaN 4679 2301 6978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6983 39.39 NaN 69527 35 0 9142.1 0.261 + 212 AETVRYSMCT 10 41 580.7568288503979 1159.4991047675958 2 580.7564086914062 MULTI HCD FTMS 0 0 0 6978 34876.2421875 0.02318068530299691 41 -1.03594970703125 5 Unmodified _AETVRYSMCT_ POLR3A|p.I1153M|1|0.14|ENSG00000148606|chr10:77982788-77982788|G/C|missense_variant 4.897010918128616 0.4493830473644964 2 S 1 9 15.485 0 0 1.3355 0 0 353.10719162499646 716.3384865807633 1069.4456782057598 0 0 0 0 0 0.8494850021680094 0 0 0 + S 1.3355 + + 13 + NaN NaN 103003 NaN 4680 2301 6978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6984 39.394 NaN 64844 35 0 17408 0.261 + -1 SADRGSFEM 9 34 508.21169220600893 NaN 0 508.21160888671875 PEAK HCD FTMS 0 0 0 6978 28494.923828125 0.7047673891948105 -93 2.480396270751953 6 Oxidation (M) _SADRGSFEM(Oxidation (M))_ REV__ENSG00000169710|ENST00000306749|FASN 1.844237919475145 0.28630992268396543 2 A 1 -1 3.9794 0 0 0.39229 0 0 793.4551399278398 146.89339624576408 940.3485361736039 0 0 0 0 0 0 0 0 0 A 0.39229 + + 2 + NaN NaN 111872.4 NaN 4681 2301 6978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6986 39.398 NaN 165780 35 0 17608 0.327 + 20385 NYVEVTRKW 9 49 597.8154127553832 NaN 0 597.8165283203125 PEAK HCD FTMS 0 0 0 6985 83451.4609375 0.5428165371578084 -2 0.03894805908203125 1 Unmodified _NYVEVTRKW_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 53.40400417844725 0.037784916695607525 2 VE 2 7 28.711 0 0 2.4054 0 0 277.10380538204305 685.3792818658811 962.4830872479242 0 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + VE 2.4054 + + 99 + NaN NaN 110323.4 NaN 4682 2302 6985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6987 39.403 NaN 60484 35 0 11177 0.264 -1 0 31 441.78801501187917 881.5614770905584 2 441.7878723144531 MULTI HCD FTMS 0 0 0 6985 26848.443359375 0.21332631494917687 17 -0.4313621520996094 2 NaN NaN 2 N 1 -1 5.4846 0 0 0.62214 0 0 183.1639018347285 581.3445084940957 764.5084103288243 0 0 0 0 0 0 0 0 0 N 0.62214 - 2 + NaN NaN 90428.5 NaN 4683 2302 6985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6988 39.406 NaN 60591 35 0 11609 0.261 -1 TRIEMESTF 9 27 565.2633330536042 1128.5121131740084 2 565.2633056640625 MULTI HCD FTMS 0 0 0 6985 16614.935546875 0.520626756045288 1 -0.01622772216796875 3 Oxidation (M) _TRIEM(Oxidation (M))ESTF_ ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant 5.731851221503515 0.3075653528928475 2 E{[MG]|[TS]}{M(Oxidation (M))|F} 4 -1 18.188 0 0 1.6116 0 0 646.30864150215 0 646.30864150215 0 18.187587626244124 0 0 0 0 0 0.5 0 E{[MG]|[TS]}{M(Oxidation (M))|F} 1.6116 + + 2 NaN NaN 103157.1 NaN 4684 2302 6985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6989 39.41 NaN 38753 35 0 5432.7 0.261 + 3192 ECWEFYSAI 9 29 574.2414857615485 1146.4684185898968 2 574.2421264648438 MULTI HCD FTMS 0 0 0 6985 13515.810546875 0.31999498188168896 6 -0.13698959350585938 4 Unmodified _ECWEFYSAI_ ENST00000374024.3_1_1:27721341-27721638:+|nuORF 1.844237919475145 0.33703635659052655 2 E 1 8 5.4846 0 0 0.47839 0 0 73.08592454868433 941.3092745416624 1014.3951990903468 0 0 0 0 0 0 0 0 0 + E 0.47839 + + 1 + NaN NaN 83761 NaN 4685 2302 6985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6991 39.415 NaN 98386 35 0 7902.9 0.327 + 8893 HPASDKIEAYM 11 30 631.2977510056597 1260.5809490781194 2 631.2979125976562 MULTI HCD FTMS 0 0 0 6990 72226.3671875 0.7446153972543954 1 -0.022922515869140625 1 Unmodified _HPASDKIEAYM_ DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 20.410884301107757 0.2792417076485638 2 HPA 3 8 31.198 0 0 2.4749 0 0 0 952.403109354405 952.403109354405 7.564987362915829 0 0 0 0 0.5 0 0 0 + HPA 2.4749 + + 25 + NaN NaN 112908.8 NaN 4686 2303 6990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6992 39.419 NaN 345830 35 0 40511 0.261 + 7348 FVDEHEPSM 9 81 545.7284903765224 1089.4424278198446 2 545.7285766601562 MULTI HCD FTMS 0 0 0 6990 33093.03515625 0.6892190935059954 2 -0.03917694091796875 2 Unmodified _FVDEHEPSM_ ENSG00000165030|ENST00000297689|NFIL3 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}{I|L}DN 4 7 20.578 0 0 1.8889 0 0 129.95513641535086 467.2345369928344 597.1896734081853 0 0 0 0 0 0 0 0.3494850021680094 0.7134679910804405 {M(Oxidation (M))|F}{I|L}DN 1.8889 - 542 + NaN NaN 134866.3 NaN 4687 2303 6990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6993 39.423 NaN 103490 35 0 7524 0.264 -1 NYVQVSKTKC 10 50 409.54357051252737 1225.608882137782 3 409.5439147949219 MULTI HCD FTMS 0 0 0 6990 46070.96484375 0.9094743460768466 -1 0.01622772216796875 3 Carbamidomethyl (C) _NYVQVSKTKC(Carbamidomethyl (C))_ ENSG00000163520|ENST00000404922|FBLN2;nc|ENSG00000163520|P98095|FBLN2 7.477065608646677 0.43572640772348226 2 NY 2 -1 45.217 0 0 3.6893 0 0 0 945.4776811551061 945.4776811551061 22.769250191953674 0 0 0 0 0.4247425010840047 2 0 0 NY 3.6893 + + 21 + NaN NaN 94559.5 NaN 4688 2303 6990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6994 39.426 NaN 49583 35 0 18865 0.261 -1 SGMVRTWAIAT 11 26 604.8084769026877 1207.6024008721754 2 604.8059692382812 MULTI HCD FTMS 0 0 0 6990 19682.3984375 0.6760693738411009 -1 0.01622772216796875 4 Oxidation (M) _SGM(Oxidation (M))VRTWAIAT_ ENST00000355653.7_1_17:41166726-41167353:-|nuORF 4.189502756095605 0.4005469306127019 2 V 1 -1 16.99 0 0 1.4069 0 0 817.4480562450254 288.06171594791255 1105.509772192938 0 0 0 0 0 1 0 0 0 V 1.4069 + + 6 + NaN NaN 107529.3 NaN 4689 2303 6990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6995 39.429 NaN 36069 35 0 7808.9 0.264 -1 0 16 438.18711915937047 437.1798426927705 1 438.1867980957031 MULTI HCD FTMS 0 0 0 6990 16871.009765625 0.3900408149626868 7 -0.17701339721679688 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 106002.5 NaN 4690 2303 6990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6996 39.433 NaN 86615 35 0 16004 0.261 + 34991 YSVARGNRA 9 40 497.26702206266856 NaN 0 497.19635009765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YSVARGNRA_ REV__ENST00000604292.1_1_6:101337837-101337969:+|nuORF 3.944395688203298 0.27613285122220627 2 K 1 -1 3.9794 0 0 0.40094 0 0 518.3247718091278 343.0819491022094 861.4067209113373 0 0 0 0 0 0 0 0 0 K 0.40094 - 1 + NaN NaN 92153 NaN 4691 2303 6990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6998 39.438 NaN 263930 35 0 28162 0.327 + 100 ADKMDMSL 8 52 492.7042973904869 983.3940418477738 2 492.7043151855469 MULTI HCD FTMS 0 0 0 6997 186880.6875 1 0 0 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 86.33184430468982 0.018358314069074518 2 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 6 2 57.211 0 0 5.8177 0 0 228.07486159492345 0 228.07486159492345 0 26.276814821380086 0 0 0 1.774227503252014 0 0.3807196863200844 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}S{I|L} 5.8177 + + 60 NaN NaN 118180.3 NaN 4692 2304 6997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 6999 39.442 NaN 121470 35 0 12049 0.261 -1 MASVPALQL 9 50 486.2650710523683 970.5155891715366 2 486.27398681640625 MULTI HCD FTMS 0 0 0 6997 32916.26953125 0.5394898532642454 7 -0.18720626831054688 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MASVPALQL_ ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-3|BRD2 13.90604991867851 0.24021115267848145 2 ATQ{M(Oxidation (M))|F}AT[{I|L}A] 8 -1 34.43 0 0 3.5476 0 0 149.08624720197105 0 149.08624720197105 0 15.477372199242293 0 0 0 0.2742275032520141 0 0.4247425010840047 0.805462187404089 ATQ{M(Oxidation (M))|F}AT[{I|L}A] 3.5476 - 130 + NaN NaN 101280.1 NaN 4693 2304 6997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7000 39.446 NaN 94846 35 0 10992 0.261 -1 RHIIMANPQM 10 24 613.81223171348 1225.6099104937598 2 613.8116455078125 MULTI HCD FTMS 0 0 0 6997 40178.61328125 0.9290809386082021 -1 0.022922515869140625 3 Oxidation (M) _RHIIM(Oxidation (M))ANPQM_ UBQLN4|p.M218I|1|0.05|ENSG00000160803|chr1:156050378-156050378|C/T|missense_variant 1.4819007175156935 0.4674597685733628 2 M 1 -1 4.6041 0 0 0.37566 0 0 62.00190124118246 1029.5499813044848 1091.5518825456672 0 0 0 0 0 0 0 0 0 M 0.37566 + + 5 + NaN NaN 100186.6 NaN 4694 2304 6997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7001 39.449 NaN 150270 35 0 16887 0.264 -1 MRCCLVKWI 9 53 403.54089969867965 1207.600869696239 3 403.8742980957031 MULTI HCD FTMS 0 0 0 6997 6476.72216796875 0.3309911082768395 -1 0.022922515869140625 4 Carbamidomethyl (C) _MRCC(Carbamidomethyl (C))LVKWI_ ENSG00000115041|ENST00000295225|KCNIP3;ENST00000475491.1_1_2:95963129-95976459:+|nuORF;nc|ENSG00000115041|Q9Y2W7-2|KCNIP3 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 -1 11.259 0 0 0.93235 0 0 1042.5216593464327 0 1042.5216593464327 0 3.4948500216800937 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.93235 + + 3 + NaN NaN 102234.1 NaN 4695 2304 6997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7003 39.454 NaN 2040700 35 0 281210 0.327 + 11621 IYTSSVNRL 9 87 526.7904640151188 1051.5663750970375 2 526.7906494140625 MULTI HCD FTMS 0 0 0 7002 1226899.5 0.3229882838709881 7 -0.204071044921875 1 Unmodified _IYTSSVNRL_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 140.63315402491853 1.8728231636916273E-05 2 {I|L}YTSSVNR{I|L} 9 0 + 101.61 0 0 9.6631 9.6631 90.381 0 0 0 18.903470859664537 2.4252960407781643 2.4252960407781643 2.4252960407781643 0 2.7179001828205482 1.6989700043360187 1.1861818737241734 0 + + {I|L}YTSSVNR{I|L};[Y{I|L}]TSSVNR{I|L};{I|L}YTSSVGGR{I|L};[Y{I|L}]TSSVGGR{I|L};[YT]{I|L}SSVNR{I|L};[YT]{I|L}SSVGGR{I|L};{[MG]|[TS]}[Y{I|L}]SVNR{I|L};{[MG]|[TS]}[Y{I|L}]SVGGR{I|L};{I|L}{[QN]|[E{I|L}]|[KN]}[H{I|L}]S{I|L}D{I|L};{I|L}{[QN]|[E{I|L}]|[KN]}[H{I|L}]{I|L}SD{I|L} 9.6631;9.4325;8.7874;8.5568;6.9045;6.0289;5.4824;4.6068;0.3445;0.30098 +;+;-;-;-;-;-;-;-;- + 1366 + NaN NaN 388789.3 NaN 4696 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7004 39.458 NaN 915280 35 0 356800 0.411 + 30182 VHFPGGLI 8 70 420.2425334153624 NaN 0 420.2347717285156 PEAK HCD FTMS 0 0 0 7002 29048.947265625 1 0 0 2 Unmodified _VHFPGGLI_ REV__ENSG00000127412|ENST00000265310|TRPV5;REV__ENSG00000165125|ENST00000359396|TRPV6;REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6 6.354104778181461 0.38822285293237185 2 {I|L} 1 -1 11.99 0 0 1.4299 0 0 594.2920146072889 128.07172571353752 722.3637403208264 0 0 0 0 0 0.5 0 0 0 {I|L} 1.4299 + + 40 + NaN NaN 222545.3 NaN 4697 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7005 39.464 NaN 438650 35 0 79402 0.261 + 25968 SPDHPVVL 8 50 432.2346597468243 862.4547665604487 2 432.23455810546875 MULTI HCD FTMS 0 0 0 7002 266369.96875 0.8138521512827341 2 -0.051868438720703125 3 Unmodified _SPDHPVVL_ BANP|p.L102Pfs*27|1|0.1|ENSG00000172530|chr16:87984223-87984224|-/ACCTTTATCAGAAGTCACTGATG|frameshift_variant;ENSG00000172530|ENST00000682872|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP 40.44857923139169 0.22516712537107883 2 V{I|L} 2 6 30.969 0 0 3.5908 0 0 632.2919838229471 0 632.2919838229471 0 26.989700043360187 0 0 0 1 0 0 0 + V{I|L} 3.5908 + + 41 + NaN NaN 146356.5 NaN 4698 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7006 39.468 NaN 181310 35 0 42012 0.261 + 4745 EYSRSSVL 8 40 470.74049717951283 939.4664414258257 2 470.7402648925781 MULTI HCD FTMS 0 0 0 7002 137074.609375 0.3025336228552858 8 -0.23386383056640625 4 Unmodified _EYSRSSVL_ ENST00000461888.5_1_1:160195382-160195415:-|nuORF 21.74664581756881 0.4337896562907935 2 V{I|L} 2 6 24.464 0 0 2.604 0 0 709.3030061327347 0 709.3030061327347 0 17.47425010840047 0 0 0 0.3494850021680094 0 0 0 + V{I|L} 2.604 + + 19 NaN NaN 113666.9 NaN 4699 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7007 39.471 NaN 167290 35 0 24167 0.261 + 25002 RYVPRASYF 9 56 579.8062363837643 1157.5979198343284 2 579.8064575195312 MULTI HCD FTMS 0 0 0 7002 84984.2109375 0.5912839747057381 -4 0.07818603515625 5 Unmodified _RYVPRASYF_ ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 16.149105407346934 0.22083165093524068 2 RYV 3 6 25.177 0 0 2.175 0 0 0 736.3433449917393 736.3433449917393 -0.4968123769230459 0 -0.4968123769230459 0 0 0.5 0 0 0 + RYV 2.175 + + 64 + NaN NaN 103922.9 NaN 4700 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7008 39.474 NaN 53559 35 0 15159 0.263 + 8282 GVFAVSSTL 9 27 440.74228501273205 879.4700170922641 2 440.7425842285156 MULTI HCD FTMS 0 0 0 7002 25381.962890625 0.6125600219088511 1 -0.032073974609375 6 Unmodified _GVFAVSSTL_ ENST00000509248.1_1_4:139101937-139104441:-|nuORF 12.531546534597751 0.2520865569484384 2 V{I|L} 2 7 25.217 0 0 2.8672 0 0 649.3033924787125 0 649.3033924787125 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.8672 - 2 NaN NaN 99979.3 NaN 4701 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7009 39.478 NaN 48335 35 0 4884.6 0.261 + 28422 TPGHTPSL 8 44 405.2115971893955 NaN 0 405.2117004394531 PEAK HCD FTMS 0 0 0 7002 3910.20654296875 0.1602689144906692 1 -0.032073974609375 7 Unmodified _TPGHTPSL_ ENSG00000115524|ENST00000335508|SF3B1 4.75600775471527 0.38822285293237185 2 S 1 7 4.6041 0 0 0.56953 0 0 131.09371332234724 587.2576998346311 718.3514131569784 0 0 0 0 0 0 0 0 0 + S 0.56953 + + 1 + NaN NaN 110040.2 NaN 4702 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7010 39.481 NaN 75967 35 0 8332.8 0.261 + 8215 GRFLVHGEW 9 42 550.7857825158316 NaN 0 550.7861328125 PEAK HCD FTMS 0 0 0 7002 20593.076171875 1 0 0 8 Unmodified _GRFLVHGEW_ REV__nc|ENSG00000115325|Q99704-2|DOK1 4.3292370932331545 0.2742679634796037 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108779 NaN 4703 2305 7002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7012 39.486 NaN 1481800 35 0 288090 0.327 + 2312 DMHTEVTTL 9 79 531.7422678049099 1061.4699826766198 2 531.7423706054688 MULTI HCD FTMS 0 0 0 7011 773782.5 0.9496941737328847 1 -0.019794464111328125 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 71.92227651296345 0.008466197542043549 2 EVTT{I|L} 5 4 64.97 0 0 6.1208 0 0 500.17244155097814 0 500.17244155097814 0 40.7056632587621 0 0 0 1.8494850021680094 0 1.274227503252014 0 + EVTT{I|L} 6.1208 + + 178 NaN NaN 309405.5 NaN 4704 2306 7011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7013 39.491 NaN 42618 35 0 22711 0.261 + -1 GCCCCCCCA 9 20 577.1263863912737 NaN 0 577.12646484375 PEAK HCD FTMS 0 0 0 7011 19498.4375 0.5369590728452173 439 -11.345436096191406 2 5 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CCA_ REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85913.2 NaN 4705 2306 7011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7014 39.494 NaN 49922 35 0 14030 0.261 -1 SGMVRTWAIAT 11 32 604.8084769026877 1207.6024008721754 2 605.3086547851562 MULTI HCD FTMS 0 0 0 7011 10623.79296875 0.4536227308155412 1 -0.019794464111328125 3 Oxidation (M) _SGM(Oxidation (M))VRTWAIAT_ ENST00000355653.7_1_17:41166726-41167353:-|nuORF 2.282774691075616 0.408909192180357 2 [C(Carbamidomethyl (C))M]VEV 5 -1 18.328 0 0 1.5177 0 0 0 586.3094576471311 586.3094576471311 18.327731244245342 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]VEV 1.5177 - 8 + NaN NaN 98251.5 NaN 4706 2306 7011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7015 39.497 NaN 40609 35 0 3814.8 0.262 + 1890 CYLLMRQP 8 30 512.2601140033531 NaN 0 512.27294921875 PEAK HCD FTMS 0 0 0 7011 4153.505859375 1 0 0 4 Unmodified _CYLLMRQP_ ENSG00000169962|ENST00000339381|TAS1R3 2.302733041254933 0.38822285293237185 2 T{I|L} 2 7 9.464 0 0 0.92556 0 0 165.0186278096375 640.3319185846311 805.3505463942686 0 0 0 0 0 0 0 0 0 T{I|L} 0.92556 - 4 + NaN NaN 96917.6 NaN 4707 2306 7011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7016 39.501 NaN 41712 35 0 6723.8 0.261 + 34777 YQPKPDDI 8 35 488.2420914331455 NaN 0 488.2421875 PEAK HCD FTMS 0 0 0 7011 10686.673828125 0.3820654313891994 -6 0.12642669677734375 5 Unmodified _YQPKPDDI_ tr|U7T631|U7T631_FUSNUZinctransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00357PE=3SV=1 2.302733041254933 0.38822285293237185 2 V 1 8 6.9897 0 0 0.71728 0 0 327.1410909700035 545.2457369440061 872.3868279140097 0 0 0 0 0 0 0 0 0 V 0.71728 - 2 + NaN NaN 99025 NaN 4708 2306 7011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7018 39.506 NaN 2825100 35 0 323450 0.327 + 11911 KFIDTTSKF 9 111 543.7950986694144 1085.5756444056287 2 543.7955932617188 MULTI HCD FTMS 0 0 0 7017 2724994.5 0.32660949890211044 6 -0.18199539184570312 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 187.1423235319798 5.87619274747922E-13 2 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 109.66 0 0 10.102 10.102 90.031 0 0 0 59.22192331588229 10.360483839752604 10.360483839752604 0.9640156839957825 0 3.079689690656103 0 1.6791746928241125 0.5242275032520141 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTS{M(Oxidation (M))|F}K;[Y{I|L}]N{I|L}TTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};[Y{I|L}]N{I|L}TTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[MG]|[TS]}ESK{M(Oxidation (M))|F} 10.102;10.013;9.7337;8.6693;8.0524;6.9879;6.8235;6.3944;5.7591;5.7306 +;-;+;-;-;-;-;-;-;- + 4625 + NaN NaN 495244.1 NaN 4709 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7019 39.51 NaN 152870 35 0 36065 0.261 + 19194 NIEGPDAKL 9 38 478.7560145821947 955.4974762311895 2 478.7559509277344 MULTI HCD FTMS 0 0 0 7017 101759.0703125 0.03094899415990551 18 -0.4828147888183594 2 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 35.61225514009592 0.08548698421724198 2 {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 9 0 + 55.564 0 0 5.8151 5.8151 92.993 0 0 0 17.345595830311566 48.57386545501626 17.345595830311566 55.56356549837645 0 2.242992819099939 2 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}EG[DP]AK{I|L} 5.8151 + + 46 NaN NaN 103296.5 NaN 4710 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7020 39.514 NaN 137220 35 0 12874 0.261 + 23166 RFKEANNFL 9 45 569.8038710960735 1137.593189258947 2 569.8038330078125 MULTI HCD FTMS 0 0 0 7017 88495.1640625 0.650140050620485 2 -0.052829742431640625 3 Unmodified _RFKEANNFL_ ENSG00000147604|ENST00000352983|RPL7 26.268140514670165 0.13340543277302316 2 [R{M(Oxidation (M))|F}]K{[CP]|[EA]}NN{M(Oxidation (M))|F}{I|L} 9 0 + 48.35 0 0 4.2502 4.2502 84.468 0 0 0 7.147642715192504 41.36046240493748 7.147642715192504 7.7815125038364386 0 0.4247425010840047 0 0 1 + + [R{M(Oxidation (M))|F}]K{[CP]|[EA]}NN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][QT]VNN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}]K{[CP]|[EA]}GGN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}]K{[CP]|[EA]}NGG{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][QT]VGGN{M(Oxidation (M))|F}{I|L};[R{M(Oxidation (M))|F}][QT]VNGG{M(Oxidation (M))|F}{I|L} 4.2502;3.5662;3.4408;3.4408;2.7567;2.7567 +;-;-;-;-;- + 98 NaN NaN 107538.3 NaN 4711 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7021 39.517 NaN 100170 35 0 10599 0.261 + 1569 AYVHMVTHF 9 36 560.7657330135318 1119.5169130938634 2 560.7657470703125 MULTI HCD FTMS 0 0 0 7017 48404.5 0.042986913078373885 99 -2.5377883911132812 4 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 44.40701690623563 0.04511410083598184 2 WHVSE 5 7 43.826 0 0 3.9147 0 0 463.2212391584 0 463.2212391584 0 39.846368802282015 0 0 0 0.8252574989159953 0 0 0 WHVSE 3.9147 - 54 NaN NaN 94985.2 NaN 4712 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7022 39.521 NaN 70931 35 0 10268 0.261 + 6657 FPNADSKAL 9 31 481.7508332994654 961.4871136657308 2 481.75079345703125 MULTI HCD FTMS 0 0 0 7017 43390.5703125 0.5863638868647778 -5 0.10727310180664062 5 Unmodified _FPNADSKAL_ ENSG00000100030|ENST00000215832|MAPK1 21.590151480376914 0.17382222009858564 2 DANPE 5 8 43.073 0 0 4.4799 0 0 417.25901992011876 0 417.25901992011876 0 37.588643834802156 0 0 0 0.75 0 0 0 DANPE 4.4799 - 26 NaN NaN 102015.6 NaN 4713 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7023 39.524 NaN 69713 35 0 6211.1 0.261 + -1 EPLCSGESCL 10 43 547.7279692957273 1093.4413856582546 2 547.7283935546875 MULTI HCD FTMS 0 0 0 7017 22448.865234375 0.8090979549083045 -2 0.051868438720703125 6 Carbamidomethyl (C) _EPLC(Carbamidomethyl (C))SGESCL_ REV__ENSG00000134917|ENST00000257359|ADAMTS8 3.5964929083625545 0.45626689593999237 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.50159 0 0 620.7806628572765 309.61518274478755 930.3958456020641 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.50159 + + 15 + NaN NaN 104328.5 NaN 4714 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7024 39.527 NaN 40936 35 0 8148 0.261 + 13040 KYKEDEPLF 9 17 584.7978769715572 1167.5812010099144 2 584.7988891601562 MULTI HCD FTMS 0 0 0 7017 17895.6171875 0.47797873483649445 -1 0.019794464111328125 7 Unmodified _KYKEDEPLF_ ENSG00000155096|ENST00000337198|AZIN1 8.155526934196011 0.2891920862272901 2 E[{I|L}P]{M(Oxidation (M))|F} 4 5 21.198 0 0 1.8155 0 0 663.3229847638687 0 663.3229847638687 0 21.197887582883936 0 0 0 0.5 0 0 0 + E[{I|L}P]{M(Oxidation (M))|F} 1.8155 + + 2 NaN NaN 91144.2 NaN 4715 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7025 39.531 NaN 21689 35 0 6764.4 0.261 + 33632 YIVPNLFSTGV 11 17 605.3293549010136 NaN 0 605.8131103515625 PEAK HCD FTMS 0 0 0 7017 7320.6337890625 0.24230918665780565 6 -0.18199539184570312 8 Unmodified _YIVPNLFSTGV_ REV__ENSG00000279514|ENST00000623907|OR4C16 1.0714618166137932 0.3390807148598227 2 R 1 -1 5.4846 0 0 0.45378 0 0 760.6497548686303 288.86628137760005 1049.5160362462304 0 0 0 0 0 0 0 0 0 R 0.45378 - 1 + NaN NaN 89575.9 NaN 4716 2307 7017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7027 39.536 NaN 91846 35 0 23064 0.327 + 32448 WDIFTEEILH 10 30 434.8821235406956 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 7026 49956.19921875 0.646467289848126 -185 4.739280700683594 1 Unmodified _WDIFTEEILH_ ENSG00000166415|ENST00000360509|WDR72;WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89698 NaN 4717 2308 7026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7028 39.54 NaN 55902 35 0 6772.8 0.261 -1 QADFLDKQM 9 35 556.2582716471417 1110.5019903610832 2 556.2586669921875 MULTI HCD FTMS 0 0 0 7026 28318.728515625 0.3545706022324818 18 -0.4795379638671875 2 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 14.405379775768559 0.2358970535022398 2 [QA]D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 9 -1 [QA] + + 24.041 1.1642 0.58476 2.1648 2.1648 59.796 0 0 0 0 13.071516336144882 0 0 0 0.805462187404089 0 0 0 [QA]D{M(Oxidation (M))|F}{I|L}[RN]T{M(Oxidation (M))|F} 2.1648 - 22 + NaN NaN 110664.7 NaN 4718 2308 7026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7029 39.544 NaN 108360 35 0 51079 0.261 + 20425 PADGPELPPRE 11 17 589.2980997746383 1176.5816466160766 2 589.2980346679688 MULTI HCD FTMS 0 0 0 7026 34441.68359375 0.6911044900501978 -4 0.09783935546875 3 Unmodified _PADGPELPPRE_ ENSG00000182223|ENST00000327939|ZAR1 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100938.8 NaN 4719 2308 7026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7030 39.547 NaN 78962 35 0 10370 0.261 -1 MIANDVHTL 9 31 515.2553988039168 1028.4962446746335 2 515.2555541992188 MULTI HCD FTMS 0 0 0 7026 26842.69921875 0.29844957368509833 7 -0.20845794677734375 4 Oxidation (M) _M(Oxidation (M))IANDVHTL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 32.78568957990786 0.09846250359632436 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[DN]V 6 -1 39.895 0 0 3.8789 0 0 0 366.17771326236567 366.17771326236567 32.447274948966935 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[DN]V 3.8789 + + 11 + NaN NaN 110822.2 NaN 4720 2308 7026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7031 39.55 NaN 132910 35 0 39414 0.261 + 33835 YLKDPEKT 8 43 497.26702206266856 NaN 0 497.2675476074219 PEAK HCD FTMS 0 0 0 7026 34008.5390625 0.8542546684226298 1 -0.023113250732421875 5 Unmodified _YLKDPEKT_ ENSG00000197142|ENST00000354655|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000197142|Q9ULC5-4|ACSL5 3.5964929083625545 0.38822285293237185 2 {I|L}E 2 6 7.9588 0 0 0.80188 0 0 198.08469002201838 549.2799776666624 747.3646676886808 0 0 0 0 0 0 0 0 0 {I|L}E 0.80188 - 6 + NaN NaN 108459.4 NaN 4721 2308 7026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7032 39.554 NaN 39863 35 0 5297.1 0.261 + 29960 VFHVGGFR 8 23 459.7511448321856 NaN 0 459.7517395019531 PEAK HCD FTMS 0 0 0 7026 6263.9462890625 0.5686041769035017 -12 0.2746620178222656 6 Unmodified _VFHVGGFR_ REV__CLVS1|p.P214A|1|0.03|ENSG00000177182|chr8:61454150-61454150|C/G|missense_variant;REV__ENSG00000177182|ENST00000325897|CLVS1 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 81410.1 NaN 4722 2308 7026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7034 39.559 NaN 89774 35 0 9627 0.326 + 20386 NYVEVTRKW 9 37 597.8154127553832 NaN 0 597.8168334960938 PEAK HCD FTMS 0 0 0 7033 48029.72265625 0.31241307749472924 5 -0.15559005737304688 1 Unmodified _NYVEVTRKW_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 29.84058131909904 0.12134613108984595 2 VQK 3 7 28.188 0 0 2.3615 0 0 277.10415495127626 558.2705172174436 835.3746721687198 0 0 0 0 0 1.3494850021680094 0 0 0 VQK 2.3615 - 45 + NaN NaN 97425.7 NaN 4723 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7035 39.563 NaN 318560 35 0 31961 0.264 + 11942 KFIWTNHKF 9 75 407.55743365625244 1219.6504715689573 3 407.5574645996094 MULTI HCD FTMS 0 0 0 7033 94550.0859375 0.13127788990942718 -5 0.12095260620117188 2 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 36.506200033944 0.08138327636155518 2 K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F} 9 0 + 68.546 0 0 5.6201 5.6201 86.896 0 0 0 57.576673816981184 14.973024840566467 14.973024840566467 8.776362525516532 0 0.7614393726401688 0 0 0.6139829889124311 + + K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTNHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WTGGHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTGGHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}W[YN]P[RP];K{M(Oxidation (M))|F}{I|L}WT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RP];{M(Oxidation (M))|F}K{I|L}WT{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]};{M(Oxidation (M))|F}K{I|L}W[YN]P[RP];{M(Oxidation (M))|F}K{I|L}WT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RP];K{M(Oxidation (M))|F}[QP]Y{[RE]|[WV]}[RP] 5.6201;4.9005;4.8651;4.1456;3.4403;3.4302;2.9574;2.7207;2.7106;1.9354 +;-;-;-;-;-;-;-;-;- + 443 + NaN NaN 132958 NaN 4724 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7036 39.567 NaN 70567 35 0 14322 0.261 -1 VFMCVCVCMSD 11 27 626.7302778625843 1251.4460027919686 2 626.7301025390625 MULTI HCD FTMS 0 0 0 7033 32354.619140625 0.8151796980576995 1 -0.033138275146484375 3 Oxidation (M) _VFM(Oxidation (M))CVCVCMSD_ ENST00000464356.6_2_1:156435368-156435647:-|nuORF 6.2057823575117 0.391704213221645 2 STD{NN|[MP]|[D{I|L}]|[EV]} 5 -1 30.273 0 0 2.4191 0 0 702.2023182599625 0 702.2023182599625 0 10.809159218443796 0 0 0 0.4247425010840047 0 0.3807196863200844 0 STD{NN|[MP]|[D{I|L}]|[EV]} 2.4191 - 11 NaN NaN 95112.2 NaN 4725 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7037 39.57 NaN 85411 35 0 10918 0.261 + 10204 IGCFSAFYFS 10 40 571.2545255574465 NaN 0 571.2344360351562 PEAK HCD FTMS 0 0 0 7033 5551.912109375 1 0 0 4 Unmodified _IGCFSAFYFS_ ENST00000414441.5_1_7:100026594-100028246:+|nuORF 3.2813086475875832 0.33737594360511275 2 SY{M(Oxidation (M))|F} 3 7 13.188 0 0 1.1563 0 0 165.08662382164067 575.2234591119749 740.3100829336156 0 0 0 0 0 0 0 0 0 SY{M(Oxidation (M))|F} 1.1563 - 8 + NaN NaN 110811.1 NaN 4726 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7038 39.573 NaN 123940 35 0 33961 0.263 + 26483 SVASISLTK 9 36 453.2687110648937 904.5228691965874 2 453.2686767578125 MULTI HCD FTMS 0 0 0 7033 61879.703125 0.7626092231923034 -2 0.052829742431640625 5 Unmodified _SVASISLTK_ ENST00000298289.6_1_14:50085755-50087389:-|nuORF 24.990960013464015 0.14443998892849796 2 [VS]AS{I|L} 5 4 54.125 0 0 5.9838 0 0 0 444.2457674615844 444.2457674615844 54.12462815080637 0 0 0 0 1.305462187404089 2 0.4247425010840047 0 + [VS]AS{I|L} 5.9838 + + 17 + NaN NaN 109036 NaN 4727 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7039 39.577 NaN 177550 35 0 44158 0.261 + -1 EEQIQQLL 8 30 521.7745885653057 1041.5346241974114 2 521.7745971679688 MULTI HCD FTMS 0 0 0 7033 34315.45703125 0.6981193012002024 4 -0.1291656494140625 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EEQIQQLL_ REV__ENST00000376108.7_2_X:49846440-49846488:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 6.9897 0 0 0.6711 0 0 149.10554463135662 776.322323926989 925.4278685583456 0 0 0 0 0 0 0 0 0 {I|L} 0.6711 + + 2 + NaN NaN 116051.1 NaN 4728 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7040 39.58 NaN 17389 35 0 3709.3 0.261 + -1 HCMVSIWICI 10 16 631.2977510056597 1260.5809490781194 2 631.2981567382812 MULTI HCD FTMS 0 0 0 7033 21128.736328125 0.21782602402814744 7 -0.19849014282226562 7 Carbamidomethyl (C) _HC(Carbamidomethyl (C))MVSIWICI_ REV__ENST00000303531.11_2_16:24227198-24227306:+|nuORF 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 83141.5 NaN 4729 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7041 39.583 NaN 29407 35 0 5835.6 0.261 + 32530 WHGLHPGYY 9 17 565.2633330536042 1128.5121131740084 2 565.2631225585938 MULTI HCD FTMS 0 0 0 7033 3551.95849609375 0.11130013861393531 8 -0.22491836547851562 8 Unmodified _WHGLHPGYY_ ENSG00000125505|ENST00000245615|MBOAT7;ENST00000494142.1_1_19:54677740-54682918:-|nuORF;nc|ENSG00000125505|Q96N66-2|MBOAT7 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89626.7 NaN 4730 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7042 39.587 NaN 45265 35 0 10951 0.261 + 19581 NTEIWDLRT 9 17 574.2907273567691 1146.5669017803382 2 574.2908325195312 MULTI HCD FTMS 0 0 0 7033 14472.5263671875 0.003526458654236019 156 -4.048770904541016 9 Unmodified _NTEIWDLRT_ ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 1.4819007175156935 0.3397831423917744 2 T 1 8 5.4846 0 0 0.47835 0 0 149.10674666909046 893.390238561166 1042.4969852302565 0 0 0 0 0 0 0 0 0 + T 0.47835 + + 1 + NaN NaN 95607.6 NaN 4731 2309 7033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7044 39.592 NaN 251250 35 0 25073 0.326 + 101 ADKMDMSL 8 51 492.7042973904869 983.3940418477738 2 492.70428466796875 MULTI HCD FTMS 0 0 0 7043 143315.28125 0.7668811751883137 6 -0.16535186767578125 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 75.76082778847304 0.023045096181382205 2 DK{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{I|L} 7 1 39.512 0 0 4.0179 0 0 113.04758017186732 0 113.04758017186732 0 12.880741086823804 0 0 0 1.774227503252014 0 1.8169015600442577 0 + DK{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{I|L} 4.0179 + + 64 + NaN NaN 125937.1 NaN 4732 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7045 39.596 NaN 125090 35 0 16022 0.261 -1 EAMADLHTL 9 40 508.739389027608 1015.464225122016 2 508.73956298828125 MULTI HCD FTMS 0 0 0 7043 34666.375 0.9792128113184771 1 -0.033115386962890625 2 Oxidation (M) _EAM(Oxidation (M))ADLHTL_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 20.453626601364224 0.18364154288633264 2 AD{I|L}H[{I|L}T] 6 -1 21.164 0 0 2.0841 0 0 347.11579872633166 0 347.11579872633166 0 -2.7371905864353607 -2.7371905864353607 0 0 0 0 0.6549471895720985 0 AD{I|L}H[{I|L}T] 2.0841 + + 35 + NaN NaN 101630.4 NaN 4733 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7046 39.6 NaN 63642 35 0 5469.4 0.261 -1 DWCGCSPNDF 10 29 629.2189066988911 1256.4232604645822 2 629.7205810546875 MULTI HCD FTMS 0 0 0 7043 16623.76171875 0.6542779683155823 1 -0.033115386962890625 3 2 Carbamidomethyl (C) _DWC(Carbamidomethyl (C))GC(Carbamidomethyl (C))SPNDF_ ENSG00000015532|ENST00000017003|XYLT2;ENSG00000103489|ENST00000261381|XYLT1;nc|ENSG00000015532|Q9H1B5-2|XYLT2;XYLT2|p.G529Afs*78|1|0.35|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant 3.5964929083625545 0.45626689593999237 2 TH{M(Oxidation (M))|F} 3 -1 13.2 0 0 1.0506 0 0 853.238093083526 0 853.238093083526 0 0.72051538364164 0 0 0 0.27422750325201406 0 0 0 TH{M(Oxidation (M))|F} 1.0506 - 12 + NaN NaN 94157.8 NaN 4734 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7047 39.603 NaN 69497 35 0 6532.7 0.262 + -1 EKEFCMTS 8 34 524.2102451597054 1046.4059373862108 2 524.2102661132812 MULTI HCD FTMS 0 0 0 7043 6863.2470703125 0.32598737140527323 8 -0.21498489379882812 4 Carbamidomethyl (C),Oxidation (M) _EKEFC(Carbamidomethyl (C))M(Oxidation (M))TS_ REV__ENSG00000173612|ENST00000310357|GPRC6A;REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A;REV__nc|ENSG00000173612|Q5T6X5-3|GPRC6A 4.75600775471527 0.5349361699807423 2 M 1 -1 3.0989 0 0 0.29615 0 0 522.6350766457796 389.6973055475219 912.3323821933016 0 0 0 0 0 0 0 0 0 M 0.29615 + + 8 + NaN NaN 94744.2 NaN 4735 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7048 39.607 NaN 54319 35 0 9022.6 0.261 -1 0 28 500.7906926931824 1999.1336649063296 4 500.7901611328125 MULTI HCD FTMS 0 0 0 7043 11740.8447265625 0.2858916907766747 40 -1.0520172119140625 5 NaN NaN 2 V 1 -1 4.6041 0 0 0.2303 0 0 1357.8353383455858 539.2105196588499 1897.0458580044356 0 0 0 0 0 0 0 0 0 V 0.2303 - 2 + NaN NaN 109726.8 NaN 4736 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7049 39.61 NaN 29783 35 0 5001.6 0.261 + -1 RPMLDGFRW 9 23 618.3046617569457 1234.5947705806914 2 618.3054809570312 MULTI HCD FTMS 0 0 0 7043 18842.4453125 1 0 0 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))RPM(Oxidation (M))LDGFRW_ REV__ENST00000331677.7_1_6:116691638-116720414:+|nuORF;REV__ENST00000430252.6_1_6:116580118-116720414:+|nuORF;REV__ENST00000607094.1_1_6:116600876-116720414:+|nuORF 1.6526216038709556 0.33848895094777925 2 {I|L} 1 -1 2.2185 0 0 0.17969 0 0 674.7844811293227 443.69272791080317 1118.477209040126 0 0 0 0 0 0 0 0 0 {I|L} 0.17969 + + 1 + NaN NaN 85368.5 NaN 4737 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7050 39.613 NaN 31052 35 0 5991.4 0.263 + 18642 MYDDIAHS 8 18 476.1984982124427 NaN 0 476.198486328125 PEAK HCD FTMS 0 0 0 7043 15067.8837890625 0.9099784676847188 -21 0.4862251281738281 7 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 2 D 1 7 5.4846 0 0 0.57709 0 0 408.14930247781666 424.18366419010005 832.3329666679167 0 0 0 0 0 0 0 0 0 + D 0.57709 + + 2 + NaN NaN 84242.6 NaN 4738 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7051 39.617 NaN 23548 35 0 6760.4 0.261 -1 WYLVVALWC 9 21 605.3091430664062 NaN 0 605.3091430664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _WYLVVALWC(Carbamidomethyl (C))_ ENSG00000205592|ENST00000454784|MUC19;nc|ENSG00000205592|Q7Z5P9-2|MUC19 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87858 NaN 4739 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7052 39.62 NaN 17248 35 0 3008.3 0.261 + 23364 RKMSIPLLLPL 11 20 640.9098510742188 NaN 0 640.9098510742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _RKMSIPLLLPL_ ENSG00000185823|ENST00000329468|NPAP1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88407.5 NaN 4740 2310 7043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7054 39.625 NaN 1282000 35 0 474490 0.326 + 27780 TAVHDAIL 8 74 420.2347601312878 838.4549673293757 2 420.23480224609375 MULTI HCD FTMS 0 0 0 7053 1286501.5 0.7654484186019218 3 -0.08933639526367188 1 Unmodified _TAVHDAIL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF 53.57557251787612 0.1056313556323 2 [TA]VDHA{I|L}{I|L} 8 2 + 57.858 0 0 6.9006 6.9006 94.874 0 0 0 17.408037477650637 31.6482846226927 17.408037477650637 57.8584345174594 0 1.6237125054200234 1.5228787452803376 0.6549471895720984 0 [TA]VDHA{I|L}{I|L} 6.9006 - 94 NaN NaN 290007.5 NaN 4741 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7055 39.629 NaN 128140 35 0 15404 0.261 + 20711 PFTLSGHFPR 10 46 579.8062363837643 1157.5979198343284 2 579.8065185546875 MULTI HCD FTMS 0 0 0 7053 90307.1328125 0.6283185999446873 2 -0.0629119873046875 2 Unmodified _PFTLSGHFPR_ ENST00000475006.1_1_9:140262369-140269195:-|nuORF 5.731851221503515 0.44496410492002586 2 RYV 3 10 28.188 0 0 2.435 0 0 0 736.3430269830686 736.3430269830686 7.742275032520141 0 0 0 0 0.5 0 0 0 RYV 2.435 - 14 + NaN NaN 103474.7 NaN 4742 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7056 39.633 NaN 54063 35 0 11660 0.262 + 21333 PSTETGHVL 9 20 470.74049717951283 939.4664414258257 2 470.74017333984375 MULTI HCD FTMS 0 0 0 7053 28837.048828125 0.06364546208963019 14 -0.36373138427734375 3 Unmodified _PSTETGHVL_ REV__chr11:70160982-70161161|258|15.26|0.05|8.32|+|1|TE_info:MIR,MIR_dup115192,MIR,SINE,donor,+,70160846,70160982|None,ANO1|2 7.289230182591677 0.29575926068275815 2 V{I|L} 2 -1 20.969 0 0 2.232 0 0 709.3007679669937 0 709.3007679669937 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.232 + + 1 NaN NaN 85265.3 NaN 4743 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7057 39.636 NaN 253320 35 0 65057 0.261 + 28247 TLLDAPVDHI 10 38 547.2978238431485 1092.581094753097 2 547.28515625 MULTI HCD FTMS 0 0 0 7053 4893.97509765625 0.3202808834877209 -7 0.18720626831054688 4 Unmodified _TLLDAPVDHI_ REV__ENSG00000171720|ENST00000305264|HDAC3;REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF;REV__ENST00000491581.5_1_5:141004689-141007494:-|nuORF;REV__nc|ENSG00000171720|O15379-2|HDAC3 10.073929032068715 0.4168838835836452 2 P{I|L}VP 4 -1 32.167 0 0 2.9441 0 0 668.3209095685562 0 668.3209095685562 0 4.719712763997563 0 0 0 0.5 0 0 0 P{I|L}VP 2.9441 - 31 NaN NaN 127225 NaN 4744 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7058 39.64 NaN 144660 35 0 17271 0.261 + 21780 QAIENAHVL 9 37 497.76924792899354 993.5239429247871 2 497.7693176269531 MULTI HCD FTMS 0 0 0 7053 54246.48046875 0.9253269105295815 -2 0.066253662109375 5 Unmodified _QAIENAHVL_ ENSG00000136381|ENST00000258886|IREB2 14.838274106304384 0.23215694253501695 2 [QA]{I|L}ENA 6 3 23.633 0 0 2.3787 0 0 0 364.1985262506469 364.1985262506469 11.950462572043888 0 0 0 0 0 0 0 0.4247425010840047 + [QA]{I|L}ENA 2.3787 + + 64 + NaN NaN 104672.9 NaN 4745 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7059 39.643 NaN 42496 35 0 4605.6 0.261 + 35167 YVHSLEDL 8 28 488.2420914331455 NaN 0 488.24072265625 PEAK HCD FTMS 0 0 0 7053 21950.95703125 0.7847813082381476 -1 0.033115386962890625 6 Unmodified _YVHSLEDL_ ENSG00000167654|ENST00000450849|ATCAY;nc|ENSG00000167654|Q86WG3-3|ATCAY 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113966.8 NaN 4746 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7060 39.646 NaN 31624 35 0 6377.2 0.261 + 23277 RHELEIFEY 9 24 618.3046617569457 1234.5947705806914 2 618.3038940429688 MULTI HCD FTMS 0 0 0 7053 14792.1787109375 0.7850455960259272 1 -0.03311920166015625 7 Unmodified _RHELEIFEY_ REV__tr|U7SGK8|U7SGK8_FUSNUExonucleaseSbcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02224PE=4SV=1 7.289230182591677 0.29575926068275815 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96315.2 NaN 4747 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7061 39.65 NaN 19867 35 0 4780 0.261 -1 LERRPCWIR 9 14 643.3506469726562 NaN 0 643.3506469726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _LERRPC(Carbamidomethyl (C))WIR_ ENST00000343605.4_1_22:31031755-31031872:+|nuORF 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84592.1 NaN 4748 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7062 39.653 NaN 43203 35 0 7198.7 0.264 + 26098 SPIDVGPKV 9 35 456.2637498214803 NaN 0 456.2637634277344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SPIDVGPKV_ REV__ENST00000373874.6_1_20:35220052-35220253:+|nuORF 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103197.8 NaN 4749 2311 7053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7064 39.658 NaN 749560 35 0 91685 0.326 + 11912 KFIDTTSKF 9 75 543.7950986694144 1085.5756444056287 2 543.7952270507812 MULTI HCD FTMS 0 0 0 7063 633976.9375 0.07598653497185759 11 -0.2810249328613281 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 150.61878029816774 8.17212585535292E-06 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 110.29 0 0 10.16 10.16 92.247 0 0 0 6.363781092484686 60.53248296405036 6.363781092484686 6.39436723352722 0 3.079689690656103 0 1.705112052208703 1.3851518780601921 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}TTS{M(Oxidation (M))|F}K;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[C(Carbamidomethyl (C))M]{I|L}K{M(Oxidation (M))|F};[KS]TT{M(Oxidation (M))|F}D{I|L}K{M(Oxidation (M))|F} 10.16;9.5709;9.482;9.156;8.4562;7.4523;6.4974;5.4936;4.8963;4.5714 +;+;-;-;-;-;-;-;-;- + 1757 NaN NaN 209905.6 NaN 4750 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7065 39.663 NaN 373470 35 0 53381 0.261 -1 DMHTEVTTL 9 57 531.7422678049099 1061.4699826766198 2 531.7423095703125 MULTI HCD FTMS 0 0 0 7063 160403.453125 0.19686956590443486 7 -0.17188644409179688 2 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 32.30548876998284 0.10066689432505688 2 VTT{I|L} 4 -1 48.928 0 0 4.6094 0 0 629.2111683576187 0 629.2111683576187 0 25.467203307072737 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.6094 + + 144 NaN NaN 133525 NaN 4751 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7066 39.666 NaN 92921 35 0 23761 0.261 + 19195 NIEGPDAKL 9 29 478.7560145821947 955.4974762311895 2 478.755859375 MULTI HCD FTMS 0 0 0 7063 60152.6640625 0.018294825641153537 23 -0.581939697265625 3 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 33.4449034751529 0.0954363425218424 2 {[QV]|[N{I|L}]|[RA]|[KV]}E 3 6 37.447 0 0 3.9191 0 0 0 596.3053735302707 596.3053735302707 16.478174818886373 0 0 0 0 1 2 0 0 + {[QV]|[N{I|L}]|[RA]|[KV]}E 3.9191 + + 10 NaN NaN 112715 NaN 4752 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7067 39.669 NaN 93835 35 0 12553 0.261 -1 EAMADLHTL 9 41 508.739389027608 1015.464225122016 2 508.7392578125 MULTI HCD FTMS 0 0 0 7063 25781.154296875 0.7282341051834351 3 -0.08597183227539062 4 Oxidation (M) _EAM(Oxidation (M))ADLHTL_ ENSG00000175793|ENST00000339276|SFN;nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant 6.723162845929126 0.3000504726104499 2 AD{I|L} 3 -1 13.188 0 0 1.2987 0 0 347.11562914638813 366.17780481510005 713.2934339614882 0 0 0 0 0 0 0 0 0 AD{I|L} 1.2987 + + 17 + NaN NaN 106205.1 NaN 4753 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7068 39.673 NaN 38592 35 0 5050.4 0.261 -1 RYGSDFYSM 9 29 571.2347942284055 1140.4550355236108 2 571.234619140625 MULTI HCD FTMS 0 0 0 7063 15660.8603515625 0.42397048752404753 4 -0.09911727905273438 5 Oxidation (M) _RYGSDFYSM(Oxidation (M))_ ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 5.296884461304476 0.3108627248283497 2 YS{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.4716 0 0 725.3145930818315 0 725.3145930818315 0 25.42337778295522 0 0 0 0.5 0 0 0 YS{M(Oxidation (M))|F} 2.4716 + + 5 NaN NaN 89671.7 NaN 4754 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7069 39.676 NaN 72334 35 0 7554.7 0.261 + 9470 HPVSREWTL 9 30 562.7957071357245 1123.5768613382488 2 562.7947387695312 MULTI HCD FTMS 0 0 0 7063 34934.69140625 0.031289426307309035 46 -1.167205810546875 6 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 2 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3728944161968 787.3728944161968 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 13 + NaN NaN 93355.7 NaN 4755 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7070 39.679 NaN 38790 35 0 10513 0.261 + -1 SLLHCLKYMQ 10 13 646.8273310112424 1291.6401090892848 2 646.8275146484375 MULTI HCD FTMS 0 0 0 7063 17190.560546875 0.7833474147596072 1 -0.02979278564453125 7 Carbamidomethyl (C) _SLLHC(Carbamidomethyl (C))LKYMQ_ REV__ENSG00000138658|ENST00000505019|ZGRF1;REV__nc|ENSG00000138658|Q86YA3-2|ZGRF1;REV__nc|ENSG00000138658|Q86YA3-7|ZGRF1;REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88656.8 NaN 4756 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7071 39.683 NaN 183100 35 0 18233 0.264 + 24685 RYLTRCIRK 9 51 403.57191835121444 1207.6939256538433 3 403.57208251953125 MULTI HCD FTMS 0 0 0 7063 37022.41796875 0.9096260919196816 -3 0.09937286376953125 8 Unmodified _RYLTRCIRK_ REV__ENST00000278612.8_1_11:108068056-108093342:-|nuORF 2.282774691075616 0.33371192131023203 2 [YR]{I|L}EV 5 -1 15.942 0 0 1.32 0 0 0 544.309318070112 544.309318070112 4.1593883530779685 0 0 0 0 0 0 0 0 [YR]{I|L}EV 1.32 - 26 NaN NaN 120194.2 NaN 4757 2312 7063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7073 39.688 NaN 105870 35 0 14424 0.327 + 6658 FPNADSKAL 9 46 481.7508332994654 961.4871136657308 2 481.7505798339844 MULTI HCD FTMS 0 0 0 7072 61738.2421875 0.8343074404540071 1 -0.026424407958984375 1 Unmodified _FPNADSKAL_ ENSG00000100030|ENST00000215832|MAPK1 42.312485326615175 0.05472917415473307 2 {M(Oxidation (M))|F}PNAD[KS]A{I|L} 9 0 + 52.655 0 0 5.4765 5.4765 84.894 0 0 0 4.388793896675267 4.388793896675267 4.388793896675267 4.388793896675267 0 1.9802046884880937 0 0 0 + + {M(Oxidation (M))|F}PNAD[KS]A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NAD[KS]A{I|L};{M(Oxidation (M))|F}PGGAD[KS]A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KQ]NPE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KQ]GGPE 5.4765;5.02;4.5188;3.2452;2.2819 +;+;-;-;- + 84 + NaN NaN 90359.3 NaN 4758 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7074 39.692 NaN 104480 35 0 9538.1 0.261 + 1570 AYVHMVTHF 9 47 560.7657330135318 1119.5169130938634 2 560.76611328125 MULTI HCD FTMS 0 0 0 7072 44568.296875 0.03958007011366273 105 -2.6684494018554688 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 57.47134341890925 0.0211188941628804 2 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 2 + 60.794 0 0 5.4303 5.4303 83.733 0 0 0 13.630405586880094 1.7351626989572821 1.7351626989572821 1.7351626989572821 0 1.992992819099939 0 0.5 0 {M(Oxidation (M))|F}SVH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 5.4303;5.2753 -;+ + 134 + NaN NaN 101132.6 NaN 4759 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7075 39.696 NaN 108230 35 0 47773 0.261 -1 TLTKCQASTPA 11 24 589.2980997746383 1176.5816466160766 2 589.2982177734375 MULTI HCD FTMS 0 0 0 7072 33700.421875 0.6762303826118664 1 -0.026424407958984375 3 Carbamidomethyl (C) _TLTKC(Carbamidomethyl (C))QASTPA_ ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1 2.282774691075616 0.408909192180357 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.33822 0 0 484.19915257486406 542.2929171197874 1026.4920696946515 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33822 - 2 + NaN NaN 101645.7 NaN 4760 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7076 39.699 NaN 84274 35 0 14183 0.261 + 11483 IYQKAFEHL 9 37 574.8085050650626 1147.6024571969251 2 574.80859375 MULTI HCD FTMS 0 0 0 7072 26617.03515625 0.7248037253465335 -3 0.09602737426757812 4 Unmodified _IYQKAFEHL_ ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 27.628801355627647 0.12213550946336599 2 {I|L}YQKA 5 4 44.693 0 0 3.8944 0 0 0 541.2404879205686 541.2404879205686 19.631068929195408 0 0 0 0 0.6989700043360187 2 0 0 + {I|L}YQKA 3.8944 + + 12 + NaN NaN 97544.6 NaN 4761 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7077 39.703 NaN 219010 35 0 31688 0.261 + 21727 QADRAFQQL 9 45 538.7775623338683 1075.5405717345366 2 538.7779541015625 MULTI HCD FTMS 0 0 0 7072 42859.921875 0.5321855113324675 -3 0.09602737426757812 5 Unmodified _QADRAFQQL_ ENSG00000189241|ENST00000368608|TSPYL1 47.748688679222035 0.03472022231463587 2 Q[WD]QQ{I|L} 6 4 36.292 0 0 3.3743 0 0 259.1530018537125 0 259.1530018537125 0 22.06653386214313 0 0 0 0 0 0.3807196863200844 2 Q[WD]QQ{I|L} 3.3743 - 83 NaN NaN 127199.8 NaN 4762 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7078 39.706 NaN 16866 35 0 4684.4 0.261 + -1 CFFLIVPLC 9 12 584.7978769715572 1167.5812010099144 2 584.7977905273438 MULTI HCD FTMS 0 0 0 7072 11206.154296875 0.2993081153381069 5 -0.11895751953125 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FFLIVPLC(Carbamidomethyl (C))_ REV__ENST00000430097.2_1_20:5454736-5454826:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89598.2 NaN 4763 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7079 39.709 NaN 45684 35 0 5398.1 0.261 + 188 AESYRIQTY 9 28 565.7772924102171 1129.5400318872341 2 565.7764892578125 MULTI HCD FTMS 0 0 0 7072 18494.640625 1 0 0 7 Unmodified _AESYRIQTY_ ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;nc|ENSG00000140694|O95453-4|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 8.155526934196011 0.2891920862272901 2 Q[YT] 3 6 15.458 0 0 1.3685 0 0 719.3615589826187 0 719.3615589826187 0 9.973024840566469 0 0 0 0.5 0 0 0 + Q[YT] 1.3685 + + 7 NaN NaN 100743.3 NaN 4764 2313 7072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7081 39.714 NaN 1443600 35 0 162930 0.327 + 11943 KFIWTNHKF 9 112 407.55743365625244 1219.6504715689573 3 407.5574645996094 MULTI HCD FTMS 0 0 0 7080 720228.5625 1 0 0 1 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 118.0683919894846 0.0016252157255221692 2 K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F} 9 0 + 89.336 0 0 7.3248 7.3248 89.347 0 0 0 66.85378696635067 13.46787486224656 13.46787486224656 7.583559388717376 0 1.6560383909227108 0 0.75 1.3494850021680094 + + K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTNHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WTGGHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WTGGHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WT{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]};K{M(Oxidation (M))|F}{M(Oxidation (M))|F}[RN]S{M(Oxidation (M))|F}K{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{[WT]|[RM]}QVHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{[WT]|[RM]}{I|L}NHK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}W[QA]W{[QN]|[E{I|L}]|[KN]};{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[RN]S{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 7.3248;6.703;6.5698;5.948;4.9702;4.5373;4.3897;4.2652;4.1304;3.9155 +;-;-;-;-;-;-;-;-;- + 3481 + NaN NaN 312178.8 NaN 4765 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7082 39.719 NaN 59097 35 0 13251 0.261 + 30985 VSATLKSTV 9 27 453.2687110648937 904.5228691965874 2 453.2686462402344 MULTI HCD FTMS 0 0 0 7080 24101.916015625 0.29703347821486364 3 -0.06932830810546875 2 Unmodified _VSATLKSTV_ ENSG00000160299|ENST00000359568|PCNT 6.2057823575117 0.30397260197431997 2 [VS]A 3 6 34.705 0 0 3.8368 0 0 0 644.3657320611936 644.3657320611936 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 + [VS]A 3.8368 + + 3 + NaN NaN 94156 NaN 4766 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7083 39.722 NaN 129620 35 0 52756 0.261 + -1 EDEQESRFCL 10 21 438.18734399262246 1311.5402025780675 3 438.1874694824219 MULTI HCD FTMS 0 0 0 7080 29249.009765625 0.5586052137356481 -2 0.056217193603515625 3 Carbamidomethyl (C) _EDEQESRFC(Carbamidomethyl (C))L_ REV__ENSG00000173598|ENST00000415493|NUDT4;REV__ENSG00000177144|ENST00000322209|NUDT4B 0.6268255596534771 0.47198581731947004 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98756.8 NaN 4767 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7084 39.726 NaN 23432 35 0 4793.5 0.261 + 17985 MLCFGLASLAL 11 23 569.8038710960735 1137.593189258947 2 569.8043823242188 MULTI HCD FTMS 0 0 0 7080 17411.916015625 0.12791867306786564 9 -0.2248077392578125 4 Unmodified _MLCFGLASLAL_ REV__ENSG00000168481|ENST00000306317|LGI3;REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant;REV__nc|ENSG00000168481|Q8N145-2|LGI3 1.3295316138638542 0.4130897924953357 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89199.9 NaN 4768 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7085 39.729 NaN 50893 35 0 6818.1 0.262 + 21118 PPCFFFSV 8 29 472.2226120825835 942.430671231967 2 472.22186279296875 MULTI HCD FTMS 0 0 0 7080 15817.623046875 0.5253179833103397 3 -0.06932830810546875 5 Unmodified _PPCFFFSV_ ENST00000259154.8_1_1:215794738-215794792:+|nuORF 2.577480529830294 0.5381683276125971 2 H 1 8 3.9794 0 0 0.42225 0 0 283.0846151790358 519.2742403619749 802.3588555410106 0 0 0 0 0 0 0 0 0 H 0.42225 - 1 + NaN NaN 94205.9 NaN 4769 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7086 39.732 NaN 43049 35 0 9111.7 0.261 -1 RYLEKPMEI 9 26 597.8154127553832 NaN 0 597.8145141601562 PEAK HCD FTMS 0 0 0 7080 19109.47265625 0.12429905549462031 10 -0.2512702941894531 6 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.27934607848455584 2 K 1 -1 6.7217 0 0 0.56314 0 0 504.2307267785414 558.2666109674436 1062.497337745985 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.56314 + + 2 + NaN NaN 101960.5 NaN 4770 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7087 39.736 NaN 49216 35 0 6305 0.261 + 9893 IASFYWTLT 9 30 551.2841345829398 1100.5537162326796 2 551.284423828125 MULTI HCD FTMS 0 0 0 7080 16252.4482421875 0.13400698902216496 39 -1.012176513671875 7 Unmodified _IASFYWTLT_ ENSG00000105223|ENST00000409735|PLD3 1.844237919475145 0.33703635659052655 2 AN 2 8 19.464 0 0 1.7686 0 0 897.4401722638687 0 897.4401722638687 0 14.859856381998782 0 0 0 0 0 0 0 AN 1.7686 - 5 NaN NaN 91184.9 NaN 4771 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7088 39.739 NaN 30480 35 0 4710 0.261 + 26449 STNSILCMSPL 11 28 583.2857161438121 1164.5568793544242 2 583.2861328125 MULTI HCD FTMS 0 0 0 7080 14622.1357421875 1 0 0 8 Unmodified _STNSILCMSPL_ REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF 2.9952420565917617 0.40578455234410343 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92998.2 NaN 4772 2314 7080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7090 39.744 NaN 173790 35 0 18192 0.327 + 102 ADKMDMSL 8 37 492.7042973904869 983.3940418477738 2 492.7042541503906 MULTI HCD FTMS 0 0 0 7089 106628.8828125 0.5705719742308846 11 -0.27108001708984375 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 57.72198328787511 0.07996266466726457 2 {M(Oxidation (M))|F}S{I|L} 3 5 39.253 0 0 3.9915 0 0 618.23246962715 0 618.23246962715 0 24.78855930516417 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + {M(Oxidation (M))|F}S{I|L} 3.9915 + + 19 NaN NaN 119101.5 NaN 4773 2315 7089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7091 39.749 NaN 108720 35 0 14732 0.261 + 34665 YPTEDYKV 8 36 507.7426157244965 1013.470678515793 2 507.74249267578125 MULTI HCD FTMS 0 0 0 7089 34194.55859375 0.4092096834029046 -4 0.11909103393554688 2 Unmodified _YPTEDYKV_ ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;nc|ENSG00000167515|Q9UL33|TRAPPC2L 24.020572477871973 0.4170589785259073 2 YP 2 6 24.776 0 0 2.4447 0 0 0 750.3327000464302 750.3327000464302 -4.508272069161734 0 -4.508272069161734 0 0 0.3807196863200844 0 0 0 + YP 2.4447 + + 13 + NaN NaN 106646.5 NaN 4774 2315 7089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7092 39.752 NaN 54758 35 0 8207 0.261 -1 0 31 441.78801501187917 881.5614770905584 2 441.7881774902344 MULTI HCD FTMS 0 0 0 7089 15942.5126953125 0.12667242710493795 30 -0.7505378723144531 3 NaN NaN 2 D 1 -1 11.259 0 0 1.2772 0 0 748.5238164233693 0 748.5238164233693 0 5.774509799928715 0 0 0 0 0 0 0 D 1.2772 - 4 + NaN NaN 89502.5 NaN 4775 2315 7089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7094 39.757 NaN 544960 35 0 40771 0.327 -1 HPTGKMFIL 9 82 530.2863535547688 1058.5581541763374 2 530.285888671875 MULTI HCD FTMS 0 0 0 7093 177234.0625 0.8258213526050076 -4 0.09911727905273438 1 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 24.020572477871973 0.15282392193088168 2 HPT 3 -1 33.5 0 0 3.1647 0 0 0 720.3750817108875 720.3750817108875 6.600971678920047 0 0 0 0 0.5 0 0.3807196863200844 0 HPT 3.1647 + + 579 + NaN NaN 193902.6 NaN 4776 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7095 39.762 NaN 61596 35 0 12481 0.261 + -1 FCKCLYIIV 9 32 579.8062363837643 1157.5979198343284 2 579.80615234375 MULTI HCD FTMS 0 0 0 7093 32752.484375 0.22787784847446482 7 -0.18190765380859375 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))KCLYIIV_ REV__ENST00000423998.1_2_2:27573251-27573287:-|nuORF 1.844237919475145 0.33703635659052655 2 {I|L} 1 -1 5.4846 0 0 0.47379 0 0 166.1096787045853 875.3806246393186 1041.4903033439039 0 0 0 0 0 0 0 0 0 {I|L} 0.47379 + + 1 + NaN NaN 91558.7 NaN 4777 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7096 39.765 NaN 71702 35 0 6184.9 0.261 + -1 RAMASRGPC 9 35 511.2356304817799 1020.4567080303598 2 512.24072265625 MULTI HCD FTMS 0 0 0 7093 32637.134765625 0.2545542387082032 -4 0.09911727905273438 3 Carbamidomethyl (C),Oxidation (M) _RAM(Oxidation (M))ASRGPC(Carbamidomethyl (C))_ REV__ENST00000580790.1_1_10:75459274-75472997:-|nuORF 9.38312468134398 0.279288223203164 2 AQA 3 -1 18.188 0 0 1.7823 0 0 374.169123657116 373.15049158267817 747.3196152397942 0 0 0 0 0 0 0 0 0.3494850021680094 AQA 1.7823 - 66 + NaN NaN 94025.2 NaN 4778 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7097 39.769 NaN 44264 35 0 5969.1 0.261 + 452 ALLTRLLPLRR 11 28 441.29757465645827 NaN 0 441.2974548339844 PEAK HCD FTMS 0 0 0 7093 18959.361328125 0.4868364195952001 521 -13.37716293334961 4 Unmodified _ALLTRLLPLRR_ nc|ENSG00000167889|Q3V5L5-2|MGAT5B 0.09484139111097674 0.34185110575506755 2 N 1 11 6.9897 0 0 0.79376 0 0 182.17625175256654 581.3454683893186 763.5217201418852 0 0 0 0 0 0 0 0 0 N 0.79376 - 1 + NaN NaN 88856.2 NaN 4779 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7098 39.772 NaN 32650 35 0 4951.2 0.261 + -1 MSDQVLQQF 9 25 556.2582716471417 1110.5019903610832 2 556.2577514648438 MULTI HCD FTMS 0 0 0 7093 21870.775390625 0.27383764766368435 26 -0.6545753479003906 5 Oxidation (M) _M(Oxidation (M))SDQVLQQF_ REV__ENSG00000187860|ENST00000338306|CCDC157;REV__ENST00000475975.5_1_22:30758047-30767232:+|nuORF 2.0597508629832335 0.3354026079994024 2 D 1 -1 5.4846 0 0 0.49388 0 0 574.2755776364944 418.1756991022094 992.4512767387039 0 0 0 0 0 0 0 0 0 D 0.49388 + + 4 + NaN NaN 95684.4 NaN 4780 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7099 39.775 NaN 37072 35 0 5793.4 0.262 + 8232 GRYCCLIL 8 18 470.74049717951283 939.4664414258257 2 470.7406005859375 MULTI HCD FTMS 0 0 0 7093 10137.833984375 0.02237493622767003 19 -0.4828224182128906 6 Unmodified _GRYCCLIL_ SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|2|1|sense 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87399.1 NaN 4781 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7100 39.779 NaN 49391 35 0 7769.6 0.261 + 23228 RFYDNRTM 8 32 551.7582169255219 NaN 0 551.7574462890625 PEAK HCD FTMS 0 0 0 7093 3590.73486328125 0.36502557771363064 6 -0.16542816162109375 7 Unmodified _RFYDNRTM_ ENST00000380916.8_1_9:14618745-14618955:-|nuORF 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86486.1 NaN 4782 2316 7093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7102 39.784 NaN 202020 35 0 52576 0.327 + 2701 DVIIGETLHP 10 39 547.2978238431485 1092.581094753097 2 547.2855834960938 MULTI HCD FTMS 0 0 0 7101 12530.5009765625 0.8200450233674396 -1 0.02642822265625 1 Unmodified _DVIIGETLHP_ REV__ENSG00000115839|ENST00000264158|RAB3GAP1;REV__nc|ENSG00000115839|Q15042-3|RAB3GAP1;REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 6.2057823575117 0.44245551207394906 2 P{I|L}VP 4 -1 29.553 0 0 2.7048 0 0 668.3140736310562 0 668.3140736310562 0 2.1053190375958764 0 0 0 0 0 0 0 P{I|L}VP 2.7048 - 12 NaN NaN 120658.9 NaN 4783 2317 7101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7103 39.788 NaN 103340 35 0 21831 0.262 -1 PDHEVVAM 8 40 457.20816510932906 NaN 0 457.2081298828125 PEAK HCD FTMS 0 0 0 7101 42499.6328125 0.8002708292878117 -1 0.02642822265625 2 Oxidation (M) _PDHEVVAM(Oxidation (M))_ ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4;nc|ENSG00000169925|Q15059-2|BRD3 6.354104778181461 0.38822285293237185 2 VAV 3 -1 8.6721 0 0 0.95047 0 0 478.18471903526125 162.02288232974846 640.2076013650097 0 0 0 0 0 0 0 0 0 VAV 0.95047 - 50 + NaN NaN 115479.9 NaN 4784 2317 7101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7104 39.792 NaN 122810 35 0 9068.5 0.261 + 9398 HPTLLQHAL 9 50 515.2958524084075 1028.577151883615 2 515.2962646484375 MULTI HCD FTMS 0 0 0 7101 33021.421875 0.6870652598226704 -2 0.03957366943359375 3 Unmodified _HPTLLQHAL_ ENSG00000103148|ENST00000611875|NPRL3 32.78568957990786 0.09846250359632436 2 C{I|L} 2 8 19.949 0 0 1.9394 0 0 794.46391493965 0 794.46391493965 0 7.474250108400469 0 0 0 0.5 0 0 0 C{I|L} 1.9394 - 37 NaN NaN 102532 NaN 4785 2317 7101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7105 39.795 NaN 112950 35 0 15362 0.261 -1 RYQQWMERF 9 43 453.88013677305685 1358.6185809193705 3 453.8757019042969 MULTI HCD FTMS 0 0 0 7101 31958.91015625 0.14463763410855915 -7 0.19178009033203125 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 12.872603262515298 0.2491399024913319 2 R{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.1922 0 0 1037.4383573859704 0 1037.4383573859704 0 6.906140654642812 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1922 + + 23 + NaN NaN 90350.3 NaN 4786 2317 7101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7106 39.798 NaN 15580 35 0 4891.6 0.261 + 21275 PRQCLFLCW 9 12 583.2857161438121 1164.5568793544242 2 583.2847900390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PRQCLFLCW_ ENST00000340700.9_1_14:88693854-88707099:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 78200.5 NaN 4787 2317 7101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7107 39.802 NaN 71305 35 0 12196 0.262 + 26478 SVAIAWWH 8 36 485.25087697421446 NaN 0 485.2355651855469 PEAK HCD FTMS 0 0 0 7101 3149.12060546875 1 0 0 6 Unmodified _SVAIAWWH_ REV__ENST00000471550.1_1_7:38247105-38254853:+|nuORF 2.577480529830294 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.72171 0 0 596.3601959191786 298.0675142877563 894.427710206935 0 0 0 0 0 0 0 0 0 A 0.72171 + + 5 + NaN NaN 86327.3 NaN 4788 2317 7101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7109 39.807 NaN 397480 35 0 51535 0.327 + 11913 KFIDTTSKF 9 69 543.7950986694144 1085.5756444056287 2 543.795166015625 MULTI HCD FTMS 0 0 0 7108 339058.25 0.04063848390561026 17 -0.43318939208984375 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 139.37808420243823 3.622972506003875E-05 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 106.6 0 0 9.8197 9.8197 93.059 0 0 0 16.611344670311382 8.979400086720375 8.979400086720375 8.979400086720375 0 2.844187677400525 0 1.4476212463643423 1.8098943791441968 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};KS{I|L}[{M(Oxidation (M))|F}E]TSK{M(Oxidation (M))|F};[KS][DV][Y{I|L}]SK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}[RH]{[CP]|[EA]}W;[KS][VG]HH{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[KS][DV][Y{I|L}]S{M(Oxidation (M))|F}K;{M(Oxidation (M))|F}K{I|L}[RH]{[CP]|[EA]}W 9.8197;8.9926;8.2895;7.9417;3.8757;3.7828;3.1456;2.9662;2.9557;2.7977 +;-;+;-;-;-;-;-;-;- + 924 NaN NaN 142165.2 NaN 4789 2318 7108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7110 39.811 NaN 71950 35 0 17274 0.261 + 19196 NIEGPDAKL 9 33 478.7560145821947 955.4974762311895 2 478.7558898925781 MULTI HCD FTMS 0 0 0 7108 38876.26171875 0.011823822615493708 29 -0.7508621215820312 2 Unmodified _NIEGPDAKL_ AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 29.84058131909904 0.11198220037953927 2 {[QV]|[N{I|L}]|[RA]|[KV]}E 3 6 39.195 0 0 4.102 0 0 0 596.3065637158176 596.3065637158176 22.996812376923046 0 0 0 0 1 2 0 0.3252574989159953 + {[QV]|[N{I|L}]|[RA]|[KV]}E 4.102 + + 13 NaN NaN 90672.4 NaN 4790 2318 7108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7111 39.815 NaN 45730 35 0 6346.3 0.261 + 18541 MTSLVHLT 8 29 451.2441119416018 900.4736709500036 2 451.243896484375 MULTI HCD FTMS 0 0 0 7108 32893.5 0.9789352022463785 1 -0.023136138916015625 3 Unmodified _MTSLVHLT_ ENSG00000128011|ENST00000248668|LRFN1 2.302733041254933 0.5385759549224092 2 MP 2 7 20.969 0 0 2.3287 0 0 0 669.3575533502561 669.3575533502561 20.969100130080562 0 0 0 0 0 0 0 0 MP 2.3287 - 3 + NaN NaN 90912.3 NaN 4791 2318 7108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7112 39.818 NaN 166880 35 0 24589 0.261 -1 RYQQWMERF 9 48 453.88013677305685 1358.6185809193705 3 453.8794860839844 MULTI HCD FTMS 0 0 0 7108 36113.33203125 0.16343945645328428 -6 0.14875030517578125 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 21.590151480376914 0.17382222009858564 2 CR{M(Oxidation (M))|F} 3 -1 21.427 0 0 1.5771 0 0 934.4317961066737 0 934.4317961066737 0 10.94212497064703 0 0 0 0.5 0 0 0 CR{M(Oxidation (M))|F} 1.5771 - 19 + NaN NaN 111548.8 NaN 4792 2318 7108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7113 39.822 NaN 72643 35 0 7340.2 0.261 + 22175 QLAEYKSR 8 41 497.76924792899354 993.5239429247871 2 498.2850341796875 MULTI HCD FTMS 0 0 0 7108 8240.6181640625 0.2153065850536731 6 -0.1587371826171875 5 Unmodified _QLAEYKSR_ REV__ENSG00000197063|ENST00000357736|MAFG;REV__ENSG00000198517|ENST00000343242|MAFK 4.3292370932331545 0.5355693454741696 2 AK 2 -1 5.5732 0 0 0.56095 0 0 130.06295769405602 661.3017672174436 791.3647249114997 0 0 0 0 0 0 0 0 0 AK 0.56095 - 7 + NaN NaN 92351.2 NaN 4793 2318 7108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7114 39.825 NaN 15437 35 0 3333.4 0.261 + -1 CGDGCMSGCCT 11 14 632.6790771484375 NaN 0 632.6790771484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))GDGC(Carbamidomethyl (C))MSGC(Carbamidomethyl (C))C(Carbamidomethyl (C))T_ REV__ENSG00000164733|ENST00000353047|CTSB 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84292.5 NaN 4794 2318 7108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7116 39.83 NaN 739520 35 0 164280 0.327 + 35888 YYSHLEGARF 10 76 414.8682595874052 1241.5829493624155 3 414.8681335449219 MULTI HCD FTMS 0 0 0 7115 242982.15625 0.846132701327936 -1 0.023136138916015625 1 Unmodified _YYSHLEGARF_ ENSG00000142207|ENST00000382751|URB1 47.594388314883695 0.08653821083322558 2 YY[HS]{I|L}EG 7 3 60.807 0 0 4.8975 0 0 0 389.1927889459594 389.1927889459594 46.20251973310516 0 0 0 0 1.2614393726401687 1.6989700043360187 0.4247425010840047 0 + YY[HS]{I|L}EG 4.8975 + + 198 + NaN NaN 199333.7 NaN 4795 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7117 39.835 NaN 136960 35 0 16814 0.261 + 1571 AYVHMVTHF 9 56 560.7657330135318 1119.5169130938634 2 560.7655639648438 MULTI HCD FTMS 0 0 0 7115 58990.125 0.05238776096969105 111 -2.8460769653320312 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 48.345845343767074 0.03388484103555672 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 9 0 + 42.698 0 0 3.814 3.814 88.285 0 0 0 14.995456044618791 37.21394354078235 14.995456044618791 20.395906230238122 0 1.5612431371158735 1.3010299956639813 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}VTH{M(Oxidation (M))|F} 3.814;1.9922 +;- + 88 NaN NaN 103995.9 NaN 4796 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7118 39.838 NaN 74554 35 0 9928.1 0.261 + 6659 FPNADSKAL 9 37 481.7508332994654 961.4871136657308 2 481.75042724609375 MULTI HCD FTMS 0 0 0 7115 58274.49609375 0.7874996753562793 7 -0.1851654052734375 3 Unmodified _FPNADSKAL_ ENSG00000100030|ENST00000215832|MAPK1 13.614867670302875 0.2427269026982664 2 PE 2 8 19.464 0 0 2.0244 0 0 717.3664516738962 0 717.3664516738962 0 11.805234507957891 0 0 0 0 0 0 0 PE 2.0244 - 10 NaN NaN 113967 NaN 4797 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7119 39.841 NaN 139560 35 0 15189 0.261 + -1 YLTMKRRQMML 11 40 496.26295235951835 1485.767027678755 3 496.2642517089844 MULTI HCD FTMS 0 0 0 7115 34591.9296875 0.787502138710826 -1 0.023136138916015625 4 Oxidation (M) _YLTM(Oxidation (M))KRRQMML_ REV__ENSG00000258818|ENST00000555835|RNASE4 1.1097533296519684 0.4140536653900533 2 NNW 3 -1 24.693 0 0 1.662 0 0 0 1068.6076152098194 1068.6076152098194 17.703037561203843 0 0 0 0 0 0 0 0 NNW 1.662 - 31 + NaN NaN 131567.6 NaN 4798 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7120 39.845 NaN 38678 35 0 5377.5 0.261 + 5298 FFHFKYCH 8 20 564.7578345609983 NaN 0 564.74560546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FFHFKYCH_ ENST00000309982.9_2_8:104240677-104240884:+|nuORF 0.6903765706972694 0.38822285293237185 2 E 1 8 6.9897 0 0 0.61993 0 0 165.10740055329012 830.3353975885374 995.4427981418276 0 0 0 0 0 0 0 0 0 E 0.61993 - 1 + NaN NaN 90563.5 NaN 4799 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7121 39.848 NaN 54750 35 0 9536.2 0.261 -1 0 29 500.7908690977718 1999.1343705246873 4 500.7906188964844 MULTI HCD FTMS 0 0 0 7115 18029.56640625 0.6888730053876213 -2 0.0463409423828125 6 NaN NaN 2 M 1 -1 4.6041 0 0 0.2303 0 0 1480.860580096756 384.19919763736567 1865.0597777341216 0 0 0 0 0 0 0 0 0 M 0.2303 - 3 + NaN NaN 95711.1 NaN 4800 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7122 39.851 NaN 11115 35 0 4012.8 0.261 -1 WLCPRGTWW 9 10 631.2978339049176 NaN 0 631.2985229492188 PEAK HCD FTMS 0 0 0 7115 2763.536376953125 0.314588314327599 -1 0.023136138916015625 7 Carbamidomethyl (C) _WLC(Carbamidomethyl (C))PRGTWW_ ENST00000438382.2_1_7:74578217-74578785:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90535.6 NaN 4801 2319 7115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7124 39.857 NaN 689550 35 0 78026 0.327 + 11944 KFIWTNHKF 9 92 407.55743365625244 1219.6504715689573 3 407.557373046875 MULTI HCD FTMS 0 0 0 7123 352922.9375 0.49001519222587064 6 -0.15869903564453125 1 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 96.36657018975838 0.004359138328518304 2 K{M(Oxidation (M))|F}{I|L}WT[HN]K{M(Oxidation (M))|F} 9 0 + 90.288 0 0 7.4028 7.4028 89.708 0 0 0 74.16436201540623 13.46787486224656 13.46787486224656 8.02378753635658 0 1.7658715643802765 0 0.6861818737241735 1.7174165578762486 + + K{M(Oxidation (M))|F}{I|L}WT[HN]K{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WT[HN]K{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}WT{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]} 7.4028;6.7449;5.3096 +;-;- + 603 + NaN NaN 192178.5 NaN 4802 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7125 39.861 NaN 202110 35 0 27927 0.261 + 27823 TAYVGSAVM 9 39 457.71807055339826 913.4215881735965 2 457.7179260253906 MULTI HCD FTMS 0 0 0 7123 99860.1953125 0.721115803296209 -5 0.1123809814453125 2 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 65.23502041540118 0.010630085227462206 2 [TA]YSGVAV{M(Oxidation (M))|F} 9 2 + 72.049 0 0 7.8878 7.8878 88.439 0 0 0 2.7865969499212184 7.034021960761265 2.7865969499212184 2.7865969499212184 0 1.7614393726401687 0 1.1861818737241734 0 [TA]YSGVAV{M(Oxidation (M))|F};[YT]ASGVAV{M(Oxidation (M))|F};[YT]AVGSAV{M(Oxidation (M))|F};[TA]YVGSAV{M(Oxidation (M))|F};[YQ]{[MG]|[TS]}VAV{M(Oxidation (M))|F};[YT]{[QS]|[NT]}VAV{M(Oxidation (M))|F};[TA]YV{[QS]|[NT]}V{M(Oxidation (M))|F};[YT]AV{[QS]|[NT]}V{M(Oxidation (M))|F};[TA]Y[KA]DV{M(Oxidation (M))|F};[YT]A[KA]DV{M(Oxidation (M))|F} 7.8878;7.5828;7.1178;7.1086;6.3819;6.3568;6.1005;5.8918;5.3926;5.0876 -;-;-;+;-;-;-;-;-;- + 288 NaN NaN 111056.3 NaN 4803 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7126 39.865 NaN 187430 35 0 32246 0.261 + 21728 QADRAFQQL 9 40 538.7775623338683 1075.5405717345366 2 538.7777099609375 MULTI HCD FTMS 0 0 0 7123 21805.357421875 0.2707540000467572 4 -0.10913467407226562 3 Unmodified _QADRAFQQL_ ENSG00000189241|ENST00000368608|TSPYL1 26.268140514670165 0.13340543277302316 2 QQ{I|L} 3 6 27.92 0 0 2.5959 0 0 688.3290882794937 0 688.3290882794937 0 20.929862658764264 0 0 0 0.4247425010840047 0 0 0.5 + QQ{I|L} 2.5959 + + 16 NaN NaN 115562.4 NaN 4804 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7127 39.868 NaN 63265 35 0 12923 0.261 -1 0 32 578.7911657277738 1155.5677785223475 2 579.2921752929688 MULTI HCD FTMS 0 0 0 7123 44509.37109375 0.3071382146886174 55 -1.4356803894042969 4 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.60487 0 0 164.07958471432818 875.3751925104124 1039.4547772247406 0 0 0 0 0 0 0 0 0 {I|L} 0.60487 - 2 + NaN NaN 101831.6 NaN 4805 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7128 39.871 NaN 40683 35 0 6297.7 0.261 + 9174 HPKLGLIHCM 10 25 574.8085050650626 1147.6024571969251 2 574.80859375 MULTI HCD FTMS 0 0 0 7123 5397.990234375 0.14699170693849833 4 -0.10913467407226562 5 Unmodified _HPKLGLIHCM_ REV__ENSG00000001561|ENST00000321037|ENPP4 1.844237919475145 0.46554186016084764 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88349.5 NaN 4806 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7129 39.874 NaN 54699 35 0 13329 0.261 + 2020 DDEDGQDDSDD 11 21 613.181544719061 NaN 0 612.820556640625 PEAK HCD FTMS 0 0 0 7123 8835.767578125 0.584998949658411 -35 0.8532981872558594 6 Unmodified _DDEDGQDDSDD_ REV__ENSG00000123636|ENST00000392783|BAZ2B;REV__nc|ENSG00000226266|Q9UIF8-2|BAZ2B;REV__nc|ENSG00000226266|Q9UIF8-3|BAZ2B;REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B;REV__nc|ENSG00000226266|Q9UIF8-5|BAZ2B 0.26902006276349055 0.3413570110244116 2 C 1 -1 3.9794 0 0 0.32502 0 0 531.1471948074594 587.1669405572874 1118.3141353647468 0 0 0 0 0 0 0 0 0 C 0.32502 - 1 + NaN NaN 91105.4 NaN 4807 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7130 39.878 NaN 90441 35 0 7476.4 0.264 + 180 AERFFRKRV 9 43 403.57191835121444 1207.6939256538433 3 403.5713806152344 MULTI HCD FTMS 0 0 0 7123 14116.3798828125 0.3468338420168803 5 -0.13225936889648438 7 Unmodified _AERFFRKRV_ REV__ENSG00000136830|ENST00000373312|NIBAN2;REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2 2.735195868890462 0.3302822318919627 2 V 1 -1 3.9794 0 0 0.3295 0 0 562.2958873532148 543.3083590143186 1105.6042463675335 0 0 0 0 0 0 0 0 0 V 0.3295 + + 8 + NaN NaN 96974.8 NaN 4808 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7131 39.881 NaN 31562 35 0 5109.2 0.261 -1 QADFLDKQM 9 23 556.2582716471417 1110.5019903610832 2 556.2605590820312 MULTI HCD FTMS 0 0 0 7123 10869.7568359375 0.13609707883997965 30 -0.7874298095703125 8 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 3.2813086475875832 0.32614229037259 2 D 1 -1 5.4846 0 0 0.49388 0 0 574.280539656885 418.17661462955317 992.4571542864383 0 0 0 0 0 0 0 0 0 D 0.49388 + + 1 + NaN NaN 82033.5 NaN 4809 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7132 39.884 NaN 64060 35 0 24365 0.261 + 26522 SVLENHHWR 9 25 589.2980997746383 1176.5816466160766 2 589.298095703125 MULTI HCD FTMS 0 0 0 7123 19217.474609375 0.38561654379679733 8 -0.20827102661132812 9 Unmodified _SVLENHHWR_ ENSG00000171408|ENST00000308191|PDE7B;ENSG00000205268|ENST00000401827|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;nc|ENSG00000205268|Q13946-3|PDE7A 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94359.7 NaN 4810 2320 7123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7134 39.89 NaN 330260 35 0 53426 0.327 + 20800 PHGLSCLL 8 71 420.22446909216114 NaN 0 420.2344970703125 PEAK HCD FTMS 0 0 0 7133 13575.6650390625 0.419904069089394 6 -0.14540481567382812 1 Unmodified _PHGLSCLL_ REV__ENST00000538079.1_1_12:6881724-6881973:+|nuORF 6.354104778181461 0.38822285293237185 2 {I|L} 1 -1 5.4846 0 0 0.65414 0 0 131.07456807584703 591.2533446884548 722.3279127643018 0 0 0 0 0 0 0 0 0 {I|L} 0.65414 + + 6 + NaN NaN 133249.6 NaN 4811 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7135 39.894 NaN 395340 35 0 54359 0.261 + 10803 ISTEHDPVL 9 59 505.76135322318135 1009.5081535131627 2 505.76129150390625 MULTI HCD FTMS 0 0 0 7133 182749.59375 0.8175786225642975 -1 0.033123016357421875 2 Unmodified _ISTEHDPVL_ ENSG00000135999|ENST00000258484|EPC2 36.12702656103203 0.08312389501731911 2 DPV{I|L} 4 5 34.469 0 0 3.4144 0 0 567.2652455060562 0 567.2652455060562 0 23.2319095436452 0 0 0 0.3807196863200844 0 0.3494850021680094 0 + DPV{I|L} 3.4144 + + 47 NaN NaN 148243.2 NaN 4812 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7136 39.898 NaN 122070 35 0 12820 0.261 -1 ADKMDMSL 8 34 492.7042973904869 983.3940418477738 2 492.7041931152344 MULTI HCD FTMS 0 0 0 7133 89960.234375 0.48137790789644863 17 -0.446258544921875 3 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 38.175570920033316 0.25436662042464897 2 {M(Oxidation (M))|F}S{I|L} 3 -1 35.445 0 0 3.6044 0 0 618.2325916974625 0 618.2325916974625 0 11.492887666437142 0 0 0 0.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}S{I|L} 3.6044 + + 9 NaN NaN 100097.7 NaN 4813 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7137 39.901 NaN 223890 35 0 83977 0.261 -1 QVDRNMVIK 9 38 559.8029598972383 1117.5913668612766 2 559.8031005859375 MULTI HCD FTMS 0 0 0 7133 114523.6796875 0.7599593659259597 -1 0.033123016357421875 4 Oxidation (M) _QVDRNM(Oxidation (M))VIK_ ATRX|p.H1553D|1|0.67|ENSG00000085224|chrX:77635957-77635957|G/C|missense_variant 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 4 -1 7.7469 0 0 0.69318 0 0 612.2999745099625 0 612.2999745099625 0 3.3099321904142434 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 0.69318 - 9 NaN NaN 122171.5 NaN 4814 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7138 39.904 NaN 104640 35 0 12838 0.261 + 34666 YPTEDYKV 8 39 507.7426157244965 1013.470678515793 2 507.742431640625 MULTI HCD FTMS 0 0 0 7133 42270.61328125 0.5058566330266515 2 -0.049549102783203125 5 Unmodified _YPTEDYKV_ ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;nc|ENSG00000167515|Q9UL33|TRAPPC2L 24.020572477871973 0.4170589785259073 2 YP 2 6 22.959 0 0 2.2654 0 0 0 750.3307608784488 750.3307608784488 -1.9234874126103563 0 -1.9234874126103563 0 0 0.3494850021680094 0 0 0 + YP 2.2654 + + 31 + NaN NaN 94116.9 NaN 4815 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7139 39.908 NaN 59819 35 0 5354.1 0.261 + 9471 HPVSREWTL 9 24 562.7957071357245 1123.5768613382488 2 562.79541015625 MULTI HCD FTMS 0 0 0 7133 22165.9140625 0.01985300876219154 55 -1.4388999938964844 6 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 2 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3714084526075 787.3714084526075 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 11 + NaN NaN 92194.9 NaN 4816 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7140 39.911 NaN 25346 35 0 5824.7 0.261 + 8014 GFSYCRTSFA 10 16 569.7532123342515 1137.491871735303 2 569.7536010742188 MULTI HCD FTMS 0 0 0 7133 10164.966796875 0.4657972438962854 -2 0.059589385986328125 7 Unmodified _GFSYCRTSFA_ REV__ENSG00000158816|ENST00000289815|VWA5B1;REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1;REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1;REV__nc|ENSG00000158816|Q5TIE3-5|VWA5B1;REV__nc|ENSG00000158816|Q5TIE3|VWA5B1 3.2813086475875832 0.45793521633868084 2 W 1 -1 20.485 0 0 1.8009 0 0 933.4020870446765 0 933.4020870446765 0 13.494850021680094 0 0 0 0.5 0 0 0 W 1.8009 - 3 + NaN NaN 89409 NaN 4817 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7141 39.914 NaN 43369 35 0 7753.2 0.261 + 1764 CLLPEDMLLT 10 25 574.2911687228678 1146.5677845125356 2 574.2919311523438 MULTI HCD FTMS 0 0 0 7133 15353.69921875 0.8332550542976674 3 -0.07601165771484375 8 Unmodified _CLLPEDMLLT_ REV__ENSG00000176177|ENST00000325157|ENTHD1 5.731851221503515 0.44496410492002586 2 {I|L}T 2 -1 25.969 0 0 2.2649 0 0 914.4268449949124 0 914.4268449949124 0 21.989700043360187 0 0 0 0.5 0 0 0 {I|L}T 2.2649 + + 5 NaN NaN 91213.2 NaN 4818 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7142 39.918 NaN 52024 35 0 7764.1 0.262 + -1 CHNCDCDCGCA 11 34 471.7955200539219 NaN 0 471.7955627441406 PEAK HCD FTMS 0 0 0 7133 3358.82861328125 0.32548187196904843 -12 0.33084869384765625 9 Acetyl (Protein N-term),4 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))HNC(Carbamidomethyl (C))DC(Carbamidomethyl (C))DC(Carbamidomethyl (C))GCA_ REV__ENST00000451025.6_2_6:43608345-43608465:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90715.9 NaN 4819 2321 7133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7144 39.923 NaN 536860 35 0 96750 0.327 + 28988 TYDKGYQF 8 63 511.2356304817799 1020.4567080303598 2 511.23492431640625 MULTI HCD FTMS 0 0 0 7143 306860.90625 0.8306538019383376 -2 0.066192626953125 1 Unmodified _TYDKGYQF_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 75.76082778847304 0.023045096181382205 2 TYD[KG]YQ{M(Oxidation (M))|F} 8 0 + 84.06 0 0 8.2375 8.2375 94.78 0 0 0 16.20819241934997 16.20819241934997 16.20819241934997 16.20819241934997 0 2.079689690656103 2 0 0.7302046884880937 + + TYD[KG]YQ{M(Oxidation (M))|F};[YT]D[KG]YQ{M(Oxidation (M))|F};TYD[KG]YGA{M(Oxidation (M))|F};[YT]D[KG]Y[AG]{M(Oxidation (M))|F};[YT]{[QS]|[NT]}[{M(Oxidation (M))|F}T]Q{M(Oxidation (M))|F};[Y{I|L}][WE][YT]{M(Oxidation (M))|F};T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{[DS]|[MA]|[CV]|TT}P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{[DS]|[MA]|[CV]|TT}E[QP] 8.2375;6.6492;6.6131;5.7415;4.5819;1.2771;0.64692;0.28632 +;+;-;-;-;-;-;- + 252 + NaN NaN 160568.7 NaN 4820 2322 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7145 39.927 NaN 517850 35 0 43729 0.261 + 9396 HPTGKMFIL 9 85 530.2863535547688 1058.5581541763374 2 530.2861328125 MULTI HCD FTMS 0 0 0 7143 205511.09375 0.9575780582017608 2 -0.042942047119140625 2 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 43.85829265575387 0.04763305254408404 2 HPT 3 6 41.075 0 0 3.8803 0 0 0 720.3775610247413 720.3775610247413 3.5868125440294563 0 0 0 0 0.7887254899964358 0 0.6989700043360187 0 + HPT 3.8803 + + 688 + NaN NaN 168363.7 NaN 4821 2322 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7146 39.931 NaN 213120 35 0 36645 0.261 + 26085 SPHEESISL 9 40 499.74327257776935 997.4719922223387 2 499.7431335449219 MULTI HCD FTMS 0 0 0 7143 128242.8359375 0.5473292899746253 -4 0.11579513549804688 3 Unmodified _SPHEESISL_ ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C 32.30548876998284 0.10066689432505688 2 S{I|L}S{I|L} 4 5 48.686 0 0 4.8809 0 0 579.2264271466812 0 579.2264271466812 0 37.88872836444014 0 0 0 0.8252574989159953 0 0.8494850021680094 0 + S{I|L}S{I|L} 4.8809 + + 13 NaN NaN 116228.2 NaN 4822 2322 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7147 39.934 NaN 73353 35 0 8221.8 0.261 + 1690 CFWSLTLNEVV 11 42 437.5536166994557 1309.639020698567 3 437.5552978515625 MULTI HCD FTMS 0 0 0 7143 18824.494140625 0.2565369382766996 -12 0.330780029296875 4 Unmodified _CFWSLTLNEVV_ REV__ENST00000399541.6_1_17:6888609-6888696:-|nuORF 0.5059551277355931 0.4167017191902429 2 E 1 -1 6.9897 0 0 0.53371 0 0 64.0020607660618 1113.5853011538252 1177.587361919887 0 0 0 0 0 0 0 0 0 E 0.53371 + + 6 + NaN NaN 90332.3 NaN 4823 2322 7143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7149 39.939 NaN 280400 35 0 37280 0.327 + 11914 KFIDTTSKF 9 56 543.7950986694144 1085.5756444056287 2 543.7952270507812 MULTI HCD FTMS 0 0 0 7148 209344.203125 0.025091355333274203 22 -0.5554847717285156 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 98.72992552434107 0.004297209340172945 2 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 96.16 0 0 8.858 8.858 89.063 0 0 0 79.17046763010325 10.602554773050969 10.602554773050969 1.1841518065253922 0 3.1989700043360187 0 1.113982988912431 0 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTS{M(Oxidation (M))|F}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTYAK 8.858;8.7489;8.5101;7.571;6.5923 +;+;-;-;- + 375 + NaN NaN 122945 NaN 4824 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7150 39.944 NaN 199050 35 0 15909 0.261 + 9399 HPTLLQHAL 9 66 515.2958524084075 1028.577151883615 2 515.8107299804688 MULTI HCD FTMS 0 0 0 7148 5277.57666015625 0.18481590596937922 2 -0.049587249755859375 2 Unmodified _HPTLLQHAL_ ENSG00000103148|ENST00000611875|NPRL3 13.90604991867851 0.24021115267848145 2 T{I|L}GE{I|L}{I|L}KK 8 8 31.904 0 0 3.1018 0 0 128.0129850650331 0 128.0129850650331 0 13.716459608685483 0 0 0 0 0 0.3054621874040891 0 T{I|L}GE{I|L}{I|L}KK 3.1018 - 220 + NaN NaN 114614.4 NaN 4825 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7151 39.947 NaN 108660 35 0 29992 0.261 + 1918 DADAPDPRL 9 23 485.23563570217055 968.4567184711411 2 485.2353210449219 MULTI HCD FTMS 0 0 0 7148 47265.09765625 0.8843498658660166 1 -0.026462554931640625 3 Unmodified _DADAPDPRL_ ENSG00000134326|ENST00000256722|CMPK2;nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2;nc|ENSG00000134326|Q5EBM0-4|CMPK2 31.26834338654808 0.10542797264966089 2 {[DA]|[EG]}DAP 5 4 52.932 0 0 5.4656 0 0 0 496.25011992061303 496.25011992061303 48.32773124424534 0 0 0 0 1.5 1.5228787452803376 0.3494850021680094 0 + {[DA]|[EG]}DAP 5.4656 + + 15 NaN NaN 101884.3 NaN 4826 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7152 39.951 NaN 46922 35 0 6436.5 0.261 + 12717 KYAHMINGF 9 34 540.7677863987707 1079.5210198643413 2 540.7684936523438 MULTI HCD FTMS 0 0 0 7148 24500.353515625 1 0 0 4 Unmodified _KYAHMINGF_ ENSG00000035687|ENST00000366535|ADSS2 6.723162845929126 0.3000504726104499 2 {I|L}M 2 8 7.6195 0 0 0.70582 0 0 336.142981389535 496.2325533502563 832.3755347397913 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L}M 0.70582 - 5 + NaN NaN 92800.2 NaN 4827 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7153 39.954 NaN 32080 35 0 4033.6 0.261 + 11862 KFCYKRKSF 9 22 603.827491415915 1205.64042989863 2 604.3280029296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KFCYKRKSF_ ENST00000441476.6_2_7:6029508-6029571:-|nuORF 3.5964929083625545 0.32375295897743744 2 KS{M(Oxidation (M))|F} 3 6 26.198 0 0 2.1729 0 0 825.4347566425914 0 825.4347566425914 0 26.197887582883936 0 0 0 0 0 0 0 + KS{M(Oxidation (M))|F} 2.1729 + + 4 NaN NaN 87331.9 NaN 4828 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7154 39.957 NaN 57728 35 0 14116 0.263 -1 0 29 489.05566562427197 NaN 0 488.7423095703125 PEAK HCD FTMS 0 0 0 7148 6756.2998046875 1 0 0 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110102.1 NaN 4829 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7155 39.961 NaN 15461 35 0 4682 0.261 + 14869 LKKRLFNFC 9 17 584.8356323242188 NaN 0 584.8356323242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LKKRLFNFC_ REV__ENSG00000132906|ENST00000333868|CASP9;REV__nc|ENSG00000132906|P55211-2|CASP9;REV__nc|ENSG00000132906|P55211-4|CASP9 0.5247636613948944 0.2927039108006614 2 S 1 -1 6.9897 0 0 0.59861 0 0 786.7199232892593 290.8754061334594 1077.5953294227188 0 0 0 0 0 0 0 0 0 S 0.59861 - 2 + NaN NaN 93682.9 NaN 4830 2323 7148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7157 39.966 NaN 557990 35 0 72123 0.327 + 24890 RYQQWMERF 9 77 453.88013677305685 1358.6185809193705 3 453.8803405761719 MULTI HCD FTMS 0 0 0 7156 220958.46875 1 0 0 1 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 59.05245873256422 0.018907022117377846 2 [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 9 0 [YR]Q + + 51.918 7.4582 1.6677 3.8213 3.8213 60.753 0 0 0 0 44.45934785217331 0 0 0 1.274227503252014 0 0.7059771852360797 0 + + [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 3.8213 + + 294 + NaN NaN 161452 NaN 4831 2324 7156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7158 39.97 NaN 467550 35 0 85915 0.261 + 35889 YYSHLEGARF 10 58 414.8682595874052 1241.5829493624155 3 414.8681640625 MULTI HCD FTMS 0 0 0 7156 128717.6875 0.448231451699697 4 -0.0991363525390625 2 Unmodified _YYSHLEGARF_ ENSG00000142207|ENST00000382751|URB1 28.494509381512117 0.24525010509582015 2 YY[HS]{I|L}EQ[R{M(Oxidation (M))|F}] 9 2 + 61.833 0 0 4.9802 4.9802 86.926 0 0 0 56.348200093054714 2.632192780232785 2.632192780232785 9.208187539523749 0 0.7742275032520141 1.6989700043360187 0.4247425010840047 0 YY[HS]{I|L}EQ[R{M(Oxidation (M))|F}];YY[HS]{I|L}E[AG][R{M(Oxidation (M))|F}] 4.9802;4.2385 -;+ + 43 + NaN NaN 157025.1 NaN 4832 2324 7156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7159 39.974 NaN 181080 35 0 64586 0.261 -1 QSHFYETFWM 10 41 464.52876900556083 NaN 0 464.54327392578125 PEAK HCD FTMS 0 0 0 7156 3680.609375 1 0 0 3 Oxidation (M) _QSHFYETFWM(Oxidation (M))_ ENSG00000188107|ENST00000503581|EYS;GPI-EYS|1|fusion;GPI-EYS|2|fusion;nc|ENSG00000188107|Q5T1H1|EYS 0.5059551277355931 0.3397512615639078 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.59162 0 0 329.7843677846061 447.19927290403274 776.9836406886388 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.59162 + + 3 + NaN NaN 109951.2 NaN 4833 2324 7156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7160 39.977 NaN 75621 35 0 12606 0.261 + 19197 NIEGPEGKL 9 37 478.7560145821947 955.4974762311895 2 478.7559814453125 MULTI HCD FTMS 0 0 0 7156 24724.4296875 0.007519685740598161 35 -0.8895149230957031 4 Unmodified _NIEGPEGKL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 20.41453444215458 0.18397929046831515 2 {[QV]|[N{I|L}]|[RA]|[KV]}E 3 6 35.942 0 0 3.7616 0 0 0 596.3036035107394 596.3036035107394 22.129843661361406 0 0 0 0 1 2 0 0 + {[QV]|[N{I|L}]|[RA]|[KV]}E 3.7616 + + 22 NaN NaN 94614 NaN 4834 2324 7156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7161 39.98 NaN 24349 35 0 4645.4 0.261 + 35451 YYELYMLW 8 20 590.7728220360813 1179.5310911389624 2 590.7728881835938 MULTI HCD FTMS 0 0 0 7156 17803.94140625 0.729626919783219 -7 0.18194198608398438 5 Unmodified _YYELYMLW_ REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF 0.7936320650641473 0.540814922690045 2 V 1 -1 5.4846 0 0 0.46498 0 0 921.4038461211875 156.03284631900627 1077.4366924401938 0 0 0 0 0 0 0 0 0 V 0.46498 - 2 + NaN NaN 92226.3 NaN 4835 2324 7156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7162 39.984 NaN 43068 35 0 6613.5 0.262 + 8930 HPDNQQLK 8 31 490.25216640514986 NaN 0 490.25274658203125 PEAK HCD FTMS 0 0 0 7156 2474.890380859375 0.3613044847209008 1 -0.02312469482421875 6 Unmodified _HPDNQQLK_ ENSG00000163808|ENST00000326047|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;nc|ENSG00000163808|Q9NS87-3|KIF15 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91521.8 NaN 4836 2324 7156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7164 39.989 NaN 315450 35 0 36567 0.327 + 11945 KFIWTNHKF 9 68 407.55743365625244 1219.6504715689573 3 407.55731201171875 MULTI HCD FTMS 0 0 0 7163 173793.734375 0.24130358531150312 11 -0.2845306396484375 1 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 47.594388314883695 0.03493607795751234 2 K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F} 9 0 + 83.471 0 0 6.8438 6.8438 89.988 0 0 0 76.48116584525795 14.09256854528806 14.09256854528806 9.208187539523749 0 1.1861818737241734 0 0.4247425010840047 0.6549471895720984 + + K{M(Oxidation (M))|F}{I|L}WTNHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WTGGHK{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{I|L}WT{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]} 6.8438;6.0888;4.2032 +;-;- + 206 + NaN NaN 134525.9 NaN 4837 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7165 39.993 NaN 71212 35 0 13415 0.261 + -1 CCGCYTRE 8 35 553.1952135130683 1104.3758740929366 2 553.1951293945312 MULTI HCD FTMS 0 0 0 7163 19562.6953125 0.7603153941379175 -1 0.02312469482421875 2 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))GC(Carbamidomethyl (C))YTRE_ REV__ENST00000566973.1_1_16:89439341-89439509:-|nuORF 0.7936320650641473 0.540814922690045 2 Q 1 -1 5.4846 0 0 0.49662 0 0 335.05429313766155 638.2407320611936 973.2950251988552 0 0 0 0 0 0 0 0 0 Q 0.49662 - 4 + NaN NaN 108995.8 NaN 4838 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7166 39.997 NaN 63293 35 0 6229.1 0.261 + 21525 PYKVTQDEL 9 37 546.7824572681745 1091.550361603149 2 546.782470703125 MULTI HCD FTMS 0 0 0 7163 28529.3046875 0.15701660998146802 -5 0.13225936889648438 3 Unmodified _PYKVTQDEL_ ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF 17.44264345198275 0.2096557692338702 2 QDE{I|L} 4 5 28.276 0 0 2.5905 0 0 588.329393455275 0 588.329393455275 0 27.56289394320262 0 0 0 0 0 0.3494850021680094 0 + QDE{I|L} 2.5905 + + 40 NaN NaN 93770.7 NaN 4839 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7167 40 NaN 40126 35 0 7874.6 0.261 -1 LCLFVVTPVM 10 29 597.8154127553832 NaN 0 597.8135375976562 PEAK HCD FTMS 0 0 0 7163 12595.3798828125 0.08192763092902448 21 -0.5291099548339844 4 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))LFVVTPVM(Oxidation (M))_ ENSG00000135902|ENST00000258385|CHRND;nc|ENSG00000135902|Q07001-2|CHRND 1.6526216038709556 0.33876987398426067 2 K 1 -1 4.6041 0 0 0.38573 0 0 504.2277970910414 558.2686251275999 1062.4964222186413 0 0 0 0 0 0 0 0 0 K 0.38573 - 1 + NaN NaN 92783.2 NaN 4840 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7168 40.003 NaN 130480 35 0 16457 0.264 + 16692 LWVFDSTCNIL 11 50 437.5536166994557 1309.639020698567 3 437.5536804199219 MULTI HCD FTMS 0 0 0 7163 16193.8056640625 0.2206863723971783 -9 0.23149490356445312 5 Unmodified _LWVFDSTCNIL_ REV__ENSG00000139304|ENST00000644991|PTPRQ;REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ 3.072263186857199 0.40544676383124106 2 Y 1 -1 6.9897 0 0 0.53371 0 0 100.02386925532603 1043.5284665167644 1143.5523357720904 0 0 0 0 0 0 0 0 0 Y 0.53371 - 10 + NaN NaN 95545.7 NaN 4841 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7169 40.007 NaN 45985 35 0 5977.5 0.261 + 14431 LEPSKSYDIS 10 27 569.7848683279843 1137.5551837227686 2 569.784912109375 MULTI HCD FTMS 0 0 0 7163 20435.13671875 0.6657758085571376 -1 0.02312469482421875 6 Unmodified _LEPSKSYDIS_ REV__tr|U7T141|U7T141_FUSNUFurfamilytranscriptionalregulator,ferricuptakeregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00682PE=3SV=1 3.2813086475875832 0.45793521633868084 2 E{[SA]|[TG]}{I|L}E 5 -1 9.2082 0 0 0.80947 0 0 313.1639339865214 292.1290682428344 605.2930022293558 0 0 0 0 0 0 0 0 0 E{[SA]|[TG]}{I|L}E 0.80947 - 16 + NaN NaN 103120.5 NaN 4842 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7170 40.01 NaN 37655 35 0 7288 0.261 -1 QADFLDKQM 9 37 556.2582716471417 1110.5019903610832 2 556.257568359375 MULTI HCD FTMS 0 0 0 7163 12649.560546875 0.1583814858992345 35 -0.8862190246582031 7 Oxidation (M) _QADFLDKQM(Oxidation (M))_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85382.7 NaN 4843 2325 7163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7172 40.015 NaN 730090 35 0 128470 0.327 + 16391 LSHEESVSF 9 72 517.7431969828968 1033.4718410325936 2 517.7431640625 MULTI HCD FTMS 0 0 0 7171 474521.5 0.7327100047442561 -2 0.049564361572265625 1 Unmodified _LSHEESVSF_ ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1 99.79894945604345 0.0042691968066200965 2 TSVSEDVS{M(Oxidation (M))|F} 9 4 81.693 0 0 7.9047 0 0 64.02085541641095 0 64.02085541641095 0 66.43175948177209 0 0 0 0.8494850021680094 0 1.6989700043360187 0 TSVSEDVS{M(Oxidation (M))|F} 7.9047 - 856 + NaN NaN 197130.1 NaN 4844 2326 7171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7173 40.02 NaN 709820 35 0 91940 0.261 + 34389 YPENGVVQM 9 64 526.7396584371395 1051.464763941079 2 526.7395629882812 MULTI HCD FTMS 0 0 0 7171 269282.65625 0.9232220140748569 -1 0.026439666748046875 2 Oxidation (M) _YPENGVVQM(Oxidation (M))_ chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1 88.95385435242217 0.004553379958619559 2 [DP]Y{[QG]|[NA]}VVQ{M(Oxidation (M))|F} 9 3 + 71.251 0 0 6.7764 6.7764 89.851 0 0 0 11.337258228914706 45.26007408635124 11.337258228914706 9.208187539523749 0 1.5 0 1.586696871556164 1.2302046884880937 [DP]Y{[QG]|[NA]}VVQ{M(Oxidation (M))|F};[DP]Y{[QG]|[NA]}VV[AG]{M(Oxidation (M))|F} 6.7764;5.9006 -;- 248 NaN NaN 187750.6 NaN 4845 2326 7171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7174 40.023 NaN 183640 35 0 23665 0.262 + 29400 TYRFPCRVNR 10 46 437.8952467239479 1310.6639107720437 3 437.895751953125 MULTI HCD FTMS 0 0 0 7171 21985.6875 0.5169046569888446 -3 0.07602691650390625 3 Unmodified _TYRFPCRVNR_ ENSG00000100065|ENST00000251973|CARD10 3.3196427980023873 0.4577323075863651 2 TY 2 8 37.959 0 0 2.8962 0 0 0 1043.527173532029 1043.527173532029 33.354706403678875 0 0 0 0 0 1.6989700043360187 0 0 + TY 2.8962 + + 14 + NaN NaN 115147.5 NaN 4846 2326 7171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7175 40.027 NaN 68308 35 0 13451 0.261 + 19951 NYGDQVQHF 9 28 554.246171379517 1106.477789825834 2 554.748046875 MULTI HCD FTMS 0 0 0 7171 18798.77734375 0.7604658756904753 1 -0.01982879638671875 4 Unmodified _NYGDQVQHF_ ENSG00000154016|ENST00000284154|GRAP 14.838274106304384 0.23215694253501695 2 [YN]{[WN]|[YH]}VQ 6 5 29.398 0 0 2.6569 0 0 0 299.11432825260005 299.11432825260005 29.397737521010825 0 0 0 0 0.4247425010840047 2 0 0 [YN]{[WN]|[YH]}VQ 2.6569 - 25 + NaN NaN 102327.3 NaN 4847 2326 7171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7176 40.03 NaN 55846 35 0 6458 0.261 + -1 QWPDWCFDMQ 10 41 471.51746068116637 NaN 0 471.51763916015625 PEAK HCD FTMS 0 0 0 7171 11769.90625 0.6750701598025891 1 -0.01982879638671875 5 Carbamidomethyl (C) _QWPDWC(Carbamidomethyl (C))FDMQ_ REV__ENSG00000185519|ENST00000375662|FAM131C 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82734.5 NaN 4848 2326 7171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7178 40.035 NaN 219350 35 0 26602 0.327 + 16421 LSLCLYWL 8 33 505.7720861729766 NaN 0 505.76129150390625 PEAK HCD FTMS 0 0 0 7177 3351.5400390625 0.881864050058454 1 -0.029743194580078125 1 Unmodified _LSLCLYWL_ LRRTM1|p.G7S|1|0.38|ENSG00000162951|chr2:80303801-80303801|C/T|missense_variant 2.302733041254933 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.69237 0 0 131.11608442766664 762.3056427650329 893.4217271926996 0 0 0 0 0 0 0 0 0 + {I|L} 0.69237 + + 4 + NaN NaN 115847.2 NaN 4849 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7179 40.04 NaN 167820 35 0 24158 0.261 + 27824 TAYVGSAVM 9 52 457.71807055339826 913.4215881735965 2 457.71783447265625 MULTI HCD FTMS 0 0 0 7177 73666.1640625 0.531962058630487 2 -0.05284881591796875 2 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 81.89019881105858 0.005240739447516426 2 [TA]YSGVAV{M(Oxidation (M))|F} 9 2 + 94.944 0 0 10.394 10.394 90.194 0 0 0 7.742275032520141 7.742275032520141 7.742275032520141 0.9370405245622493 0 2.2302046884880937 1.3010299956639813 1.1549471895720984 0 [TA]YSGVAV{M(Oxidation (M))|F};[TA]YVGSAV{M(Oxidation (M))|F};[YT]ASGVAV{M(Oxidation (M))|F};[YT]AVGSAV{M(Oxidation (M))|F};[TA]YV{[QS]|[NT]}V{M(Oxidation (M))|F};[YT]{[QS]|[NT]}VAV{M(Oxidation (M))|F};[YT]AV{[QS]|[NT]}V{M(Oxidation (M))|F} 10.394;10.292;8.5281;8.4255;7.9026;6.7004;6.2354 -;+;-;-;-;-;- + 310 NaN NaN 119125.3 NaN 4850 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7180 40.043 NaN 281430 35 0 41771 0.261 + -1 IEPRPCLSM 9 58 559.7725240233335 NaN 0 559.7724609375 PEAK HCD FTMS 0 0 0 7177 92525.09375 0.9392448045457271 -1 0.01982879638671875 3 Carbamidomethyl (C),Oxidation (M) _IEPRPC(Carbamidomethyl (C))LSM(Oxidation (M))_ REV__ENSG00000137841|ENST00000260402|PLCB2;REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF;REV__nc|ENSG00000137841|Q00722-2|PLCB2;REV__nc|ENSG00000137841|Q00722-3|PLCB2 22.736283301280096 0.1690317064107932 2 AYVH 4 -1 28.761 0 0 2.5736 0 0 388.13856056910305 256.13007532291255 644.2686358920156 0 0 0 0 0 1.8494850021680094 0 0 0 AYVH 2.5736 - 125 + NaN NaN 125243.2 NaN 4851 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7181 40.046 NaN 83776 35 0 8218.6 0.261 -1 ADKMDMSL 8 34 492.7042973904869 983.3940418477738 2 492.70428466796875 MULTI HCD FTMS 0 0 0 7177 48851.3984375 0.26140420977154205 23 -0.6089019775390625 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 20.41453444215458 0.4435908194320988 2 {M(Oxidation (M))|F}S{I|L} 3 -1 33.5 0 0 3.4066 0 0 618.2300892560562 0 618.2300892560562 0 33.499934467764874 0 0 0 0.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}S{I|L} 3.4066 + + 4 NaN NaN 103878.1 NaN 4852 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7182 40.05 NaN 116080 35 0 45926 0.261 + 12031 KHYRWDRNF 9 26 441.22286740598156 1320.6467728181447 3 441.2226257324219 MULTI HCD FTMS 0 0 0 7177 24533.142578125 0.5857067704344602 2 -0.05284881591796875 5 Unmodified _KHYRWDRNF_ REV__ENSG00000111596|ENST00000229195|CNOT2;REV__nc|ENSG00000111596|Q9NZN8-2|CNOT2;REV__nc|ENSG00000111596|Q9NZN8-3|CNOT2;REV__nc|ENSG00000111596|Q9NZN8-5|CNOT2 0.26902006276349055 0.3489776809129786 2 Y 1 -1 1.5938 0 0 0.12068 0 0 1036.0067714527133 118.55726801090077 1154.564039463614 0 0 0 0 0 0 0 0 0 Y 0.12068 + + 1 + NaN NaN 91180.5 NaN 4853 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7183 40.053 NaN 89499 35 0 21363 0.261 -1 LKKCSKKLEE 10 32 421.5752661339873 NaN 0 421.57550048828125 PEAK HCD FTMS 0 0 0 7177 23176.150390625 0.6645462122197271 1 -0.029743194580078125 6 Carbamidomethyl (C) _LKKC(Carbamidomethyl (C))SKKLEE_ ENSG00000269964|ENST00000684080|MEI4 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98146.8 NaN 4854 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7184 40.056 NaN 44655 35 0 12079 0.261 -1 0 24 474.0636626877275 NaN 0 474.0636901855469 PEAK HCD FTMS 0 0 0 7177 13450.5830078125 0.5444268002840914 26 -0.6915130615234375 7 NaN NaN 2 A 1 -1 3.9794 0 0 0.42061 0 0 501.0513843580738 370.99347864322505 872.0448630012988 0 0 0 0 0 0 0 0 0 A 0.42061 - 1 + NaN NaN 88729.3 NaN 4855 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7185 40.06 NaN 28971 35 0 4631.8 0.261 + 17210 LYNKIREDF 9 28 599.317342089212 1196.620131245224 2 599.8189697265625 MULTI HCD FTMS 0 0 0 7177 7423.185546875 0.6630910271097903 1 -0.029743194580078125 8 Unmodified _LYNKIREDF_ ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF 2.9952420565917617 0.3283108881486655 2 P 1 9 2.7642 0 0 0.231 0 0 518.2872587860428 578.2473238580686 1096.5345826441114 0 0 0 0 0 0 0 0 0 P 0.231 - 2 + NaN NaN 91556.2 NaN 4856 2327 7177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7187 40.065 NaN 326620 35 0 61683 0.327 + 28989 TYDKGYQF 8 45 511.2356304817799 1020.4567080303598 2 511.2350158691406 MULTI HCD FTMS 0 0 0 7186 163084.09375 0.44145871875494336 4 -0.09253692626953125 1 Unmodified _TYDKGYQF_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 52.268347100219714 0.11372384022409306 2 [YT]D{I|L}V 5 5 41.466 0 0 4.0635 0 0 0 426.1693076918726 426.1693076918726 7.525749891599531 0 0 0 0 0.9247425010840047 2 0 0 [YT]D{I|L}V 4.0635 - 98 NaN NaN 127645.9 NaN 4857 2328 7186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7188 40.069 NaN 335900 35 0 33480 0.261 -1 HPTGKMFIL 9 56 530.2863535547688 1058.5581541763374 2 530.2864379882812 MULTI HCD FTMS 0 0 0 7186 130005.0546875 0.6057579936560966 8 -0.20851898193359375 2 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 2 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3752171377831 720.3752171377831 16.773174902439578 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 72 + NaN NaN 136131 NaN 4858 2328 7186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7189 40.073 NaN 88197 35 0 13449 0.261 + 423 AKTDPPRAI 9 25 484.7797311220525 967.544909310905 2 484.7796325683594 MULTI HCD FTMS 0 0 0 7186 36955.21875 1 0 0 3 Unmodified _AKTDPPRAI_ REV__ENSG00000146426|ENST00000682666|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-2|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-5|TIAM2;REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant 5.731851221503515 0.3075653528928475 2 A{I|L} 2 -1 25.969 0 0 2.684 0 0 765.4136137454257 0 765.4136137454257 0 21.276362525516532 0 0 0 0.5 0 0 0 A{I|L} 2.684 + + 7 NaN NaN 102650.2 NaN 4859 2328 7186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7190 40.076 NaN 55280 35 0 4713.8 0.261 + 9472 HPVSREWTL 9 29 562.7957071357245 1123.5768613382488 2 562.795654296875 MULTI HCD FTMS 0 0 0 7186 13745.9755859375 0.01231164990457917 62 -1.5779380798339844 4 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 5.731851221503515 0.3075653528928475 2 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3752586924187 787.3752586924187 25.713337517843655 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 9 + NaN NaN 86222.3 NaN 4860 2328 7186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7191 40.079 NaN 73031 35 0 6123.2 0.261 + 20288 NYNDRYDEI 9 37 601.2599955582032 1200.5054381832063 2 601.26025390625 MULTI HCD FTMS 0 0 0 7186 30936.130859375 0.6474961841410211 -3 0.07601165771484375 5 Unmodified _NYNDRYDEI_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF 23.789781309258295 0.1548179064208189 2 [YN]N{M(Oxidation (M))|F} 4 6 36.599 0 0 3.0486 0 0 0 659.2455538385374 659.2455538385374 15.62977812912628 0 0 0 0 0.5796896906561032 1.6989700043360187 0 0 [YN]N{M(Oxidation (M))|F} 3.0486 - 57 + NaN NaN 92987.1 NaN 4861 2328 7186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7192 40.083 NaN 34901 35 0 4758.6 0.261 + 7504 FWIPRPFW 8 26 574.8081997275292 NaN 0 574.7921142578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FWIPRPFW_ ENST00000479967.5_1_3:127434467-127541990:-|nuORF 0.7936320650641473 0.38822285293237185 2 T 1 8 11.237 0 0 0.97918 0 0 132.1298224460857 911.4058931940061 1043.535715640092 0 0 0 0 0 0 0 0.4247425010840047 0 T 0.97918 - 2 + NaN NaN 81303.4 NaN 4862 2328 7186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7194 40.088 NaN 234940 35 0 29900 0.327 + 11915 KFIDTTSKF 9 60 543.7950986694144 1085.5756444056287 2 543.795166015625 MULTI HCD FTMS 0 0 0 7193 179081.3125 0.021464137904996596 28 -0.7143745422363281 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 80.89551112106177 0.005562604261996351 2 K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F} 9 0 + 91.068 0 0 8.3889 8.3889 88.248 0 0 0 75.583362792012 9.273174902439578 9.273174902439578 0.5237875363565792 0 3.048455006504028 0 0.5 0 + + K{M(Oxidation (M))|F}{I|L}DTTSK{M(Oxidation (M))|F};{M(Oxidation (M))|F}K{I|L}DTTSK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}DTTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}V]TTSK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TSK{M(Oxidation (M))|F};K[RN][HV]ASK{M(Oxidation (M))|F} 8.3889;8.3407;8.0516;5.5142;4.8127;3.1131 +;-;+;-;-;- + 273 + NaN NaN 133547.5 NaN 4863 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7195 40.092 NaN 179140 35 0 33036 0.261 + 26086 SPHEESISL 9 38 499.74327257776935 997.4719922223387 2 499.7431335449219 MULTI HCD FTMS 0 0 0 7193 131445.671875 0.560998715691563 3 -0.06943130493164062 2 Unmodified _SPHEESISL_ ENSG00000055609|ENST00000262189|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C 37.97399986684836 0.07464525285885698 2 S{I|L}S{I|L} 4 5 52.933 0 0 5.3067 0 0 579.2281361310562 0 579.2281361310562 0 45.94335023848103 0 0 0 1.25 0 0.8494850021680094 0 + S{I|L}S{I|L} 5.3067 + + 52 NaN NaN 110262 NaN 4864 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7196 40.096 NaN 22092 35 0 4875.7 0.261 -1 MFRKWTQS 8 19 571.27659338576 1140.5386338383198 2 571.2772827148438 MULTI HCD FTMS 0 0 0 7193 8191.44677734375 0.4640262754408283 4 -0.09257888793945312 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))FRKWTQS_ ENST00000444457.5_1_7:102939097-102939906:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91979.2 NaN 4865 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7197 40.099 NaN 34828 35 0 5727.3 0.261 + -1 FMKGGHQIF 9 21 540.7677863987707 1079.5210198643413 2 540.767822265625 MULTI HCD FTMS 0 0 0 7193 13779.25390625 0.5624104116482376 6 -0.15221023559570312 4 Oxidation (M) _FM(Oxidation (M))KGGHQIF_ REV__ENSG00000172006|ENST00000317243|ZNF554;REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96239.4 NaN 4866 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7198 40.103 NaN 49842 35 0 4925.3 0.261 -1 WLCLAFVES 9 24 562.7757749967121 NaN 0 562.7941284179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _WLC(Carbamidomethyl (C))LAFVES_ ENSG00000275722|ENST00000615905|LYZL6;LYZL6|p.M123*|1|0.21|ENSG00000275722|chr17:35936766-35936766|C/-|frameshift_variant 2.302733041254933 0.2840881193086663 2 PV 2 -1 10.969 0 0 0.9763 0 0 137.01731762304672 787.3736055963499 924.3909232193967 0 0 0 0 0 0 0 0 0 PV 0.9763 - 5 + NaN NaN 95050.5 NaN 4867 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7199 40.106 NaN 54723 35 0 5631.6 0.261 + 3344 EELSPKMTL 9 34 524.2730165257315 NaN 0 524.2603149414062 PEAK HCD FTMS 0 0 0 7193 10718.662109375 0.575384356336944 2 -0.052906036376953125 6 Unmodified _EELSPKMTL_ ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3 1.6526216038709556 0.28723846860855273 2 T 1 8 6.9897 0 0 0.66789 0 0 132.12007197786562 810.3379000299436 942.4579720078093 0 0 0 0 0 0 0 0 0 + T 0.66789 + + 2 + NaN NaN 85399.1 NaN 4868 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7200 40.109 NaN 22406 35 0 4590.8 0.261 + 7495 FWFCFSWGI 9 15 596.7685761401359 NaN 0 596.7689819335938 PEAK HCD FTMS 0 0 0 7193 4689.92626953125 0.32334817698705587 -2 0.05284881591796875 7 Unmodified _FWFCFSWGI_ nc|ENSG00000132424|Q8TF01-2|PNISR 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82620.7 NaN 4869 2329 7193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7202 40.114 NaN 241320 35 0 34861 0.327 -1 RYQQWMERF 9 57 453.88013677305685 1358.6185809193705 3 453.88031005859375 MULTI HCD FTMS 0 0 0 7201 91046.6953125 0.4120534317040066 6 -0.15898513793945312 1 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 33.4449034751529 0.0954363425218424 2 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.4396391242517 0 1037.4396391242517 0 -0.8657434477276382 -0.8657434477276382 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 46 + NaN NaN 123342.3 NaN 4870 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7203 40.119 NaN 235390 35 0 20338 0.261 + 20289 NYNDRYDEI 9 51 601.2599955582032 1200.5054381832063 2 601.7818603515625 MULTI HCD FTMS 0 0 0 7201 27038.564453125 0.9929963916784451 -2 0.049533843994140625 2 Unmodified _NYNDRYDEI_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF 19.361941925380144 0.1930734562688509 2 [YN]N[QA]QEATY 10 7 + 55.143 0 0 4.5933 4.5933 85.592 0 0 0 29.397737521010825 16.532125137753432 16.532125137753432 9.164539485499255 0 0.3494850021680094 1.5228787452803376 0.3054621874040891 0 [YN]N[QA]QEATY;[YN]N[QA][AG]EATY;[YN]GG[QA]QEATY 4.5933;3.8299;3.8299 -;-;- 343 + NaN NaN 121288.5 NaN 4871 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7204 40.122 NaN 55266 35 0 11196 0.263 + -1 GKEGSLGIPG 10 23 478.7560145821947 955.4974762311895 2 478.7560119628906 MULTI HCD FTMS 0 0 0 7201 29262.498046875 0.008899893428426224 41 -1.0514945983886719 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GKEGSLGIPG_ REV__COL4A4|p.P82S|1|0.46|ENSG00000081052|chr2:227121097-227121097|G/A|missense_variant;REV__ENSG00000081052|ENST00000396625|COL4A4 17.11289562659939 0.35104376501799556 2 {[QV]|[N{I|L}]|[RA]|[KV]}EGM 5 -1 45.942 0 0 4.8082 0 0 0 408.24326502017817 408.24326502017817 45.94212497064703 0 0 0 0 0.7742275032520141 2 0.4247425010840047 0 {[QV]|[N{I|L}]|[RA]|[KV]}EGM 4.8082 - 14 + NaN NaN 104581.9 NaN 4872 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7205 40.126 NaN 24543 35 0 4146.3 0.261 + -1 HGPCIIMI 8 20 470.74049717951283 939.4664414258257 2 470.7395324707031 MULTI HCD FTMS 0 0 0 7201 12869.6904296875 0.028404341901626218 32 -0.82025146484375 4 Carbamidomethyl (C) _HGPC(Carbamidomethyl (C))IIMI_ REV__ENST00000375011.3_1_9:101585554-101585593:+|nuORF 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90714.4 NaN 4873 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7206 40.129 NaN 42446 35 0 4400.5 0.261 + -1 YPDTSQLQMM 10 33 410.5104413808957 1228.5094947428872 3 410.51055908203125 MULTI HCD FTMS 0 0 0 7201 12451.46875 0.9871073690182333 1 -0.026477813720703125 5 Oxidation (M) _YPDTSQLQM(Oxidation (M))M_ REV__ENSG00000166889|ENST00000300146|PATL1;REV__nc|ENSG00000166889|Q86TB9-2|PATL1;REV__nc|ENSG00000166889|Q86TB9-4|PATL1 1.9063754702782614 0.46521295622613185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107688.5 NaN 4874 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7207 40.132 NaN 51450 35 0 8004.2 0.261 + 1702 CGSPHFCG 8 36 404.1491678240539 NaN 0 404.14898681640625 PEAK HCD FTMS 0 0 0 7201 6199.22021484375 0.46673293419883305 -5 0.12554550170898438 6 Unmodified _CGSPHFCG_ ENST00000417775.5_1_1:75198678-75198738:-|nuORF 0.7936320650641473 0.38822285293237185 2 P 1 7 5.4846 0 0 0.68023 0 0 462.2080208514297 244.00325952701408 706.2112803784438 0 0 0 0 0 0 0 0 0 + P 0.68023 + + 1 + NaN NaN 100842 NaN 4875 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7208 40.136 NaN 23565 35 0 7337.8 0.261 + -1 MLCCACWFF 9 10 619.2358810296053 1236.4572091260104 2 619.2353515625 MULTI HCD FTMS 0 0 0 7201 15646.9716796875 0.15431421247613608 -9 0.22468185424804688 7 2 Carbamidomethyl (C) _MLC(Carbamidomethyl (C))C(Carbamidomethyl (C))ACWFF_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF;REV__nc|ENSG00000123843|P20851-2|C4BPB 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89386.5 NaN 4876 2330 7201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7210 40.141 NaN 257700 35 0 24993 0.326 + 21526 PYKVTQDEL 9 69 546.7824572681745 1091.550361603149 2 546.7822265625 MULTI HCD FTMS 0 0 0 7209 162302.921875 0.8932658843965928 1 -0.0165252685546875 1 Unmodified _PYKVTQDEL_ ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF 128.57297698046145 0.0006915168155602875 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTQDE{I|L} 9 0 + 108.62 0 0 9.9506 9.9506 91.733 0 0 0 5.523787536356579 5.523787536356579 5.523787536356579 5.523787536356579 0 2.4876954943324545 2 1.309894379144197 0.3807196863200844 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTQDE{I|L};PYDQTVKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVT[AG]DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTDQE{I|L};PYD[AG]TVKE{I|L};PYQDTVKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVTD[AG]E{I|L};PY[AG]DTVKE{I|L};PYKVTHH[NP];{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}TVQE{I|L} 9.9506;9.4446;9.107;8.9252;8.601;8.4191;8.0816;7.5756;6.0186;5.6054 +;-;-;-;-;-;-;-;-;- + 1498 NaN NaN 119912.5 NaN 4877 2331 7209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7211 40.145 NaN 180290 35 0 20979 0.263 + 5477 FIRGTTHELF 10 54 407.5509396493261 NaN 0 407.5574645996094 PEAK HCD FTMS 0 0 0 7209 2911.264892578125 0.3103657079046695 3 -0.07282638549804688 2 Unmodified _FIRGTTHELF_ REV__ENSG00000165124|ENST00000374469|SVEP1;REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1;REV__SVEP1|p.A3133Qfs*12|1|0.3|ENSG00000165124|chr9:110406203-110406203|C/-|frameshift_variant;REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant 16.565877749689598 0.30845283317438627 2 T 1 -1 5.4846 0 0 0.67453 0 0 167.76360917970845 541.2519625299436 709.015571709652 0 0 0 0 0 0 0 0 0 T 0.67453 + + 7 + NaN NaN 129178.8 NaN 4878 2331 7209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7212 40.149 NaN 109590 35 0 27229 0.261 + -1 RYAKCAML 8 37 514.7549615215812 1027.4953701099623 2 514.739501953125 MULTI HCD FTMS 0 0 0 7209 3277.380859375 0.8698852054834288 2 -0.0396728515625 3 Carbamidomethyl (C),Oxidation (M) _RYAKC(Carbamidomethyl (C))AM(Oxidation (M))L_ REV__ENSG00000166224|ENST00000373202|SGPL1 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 14.693 0 0 1.43 0 0 531.2711402289061 0 531.2711402289061 0 3.0102999566398108 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.43 - 26 + NaN NaN 111529.1 NaN 4879 2331 7209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7213 40.152 NaN 122840 35 0 17235 0.261 -1 HGIVEVDPM 9 53 506.74209576852627 1011.4696386038526 2 506.74200439453125 MULTI HCD FTMS 0 0 0 7209 23317.34375 0.9345845313299469 1 -0.0165252685546875 4 Oxidation (M) _HGIVEVDPM(Oxidation (M))_ ENSG00000084234|ENST00000338167|APLP2;ENST00000533860.5_1_11:130009456-130013340:+|nuORF;nc|ENSG00000084234|Q06481-2|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2 7.289230182591677 0.29575926068275815 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 20.458 0 0 2.0226 0 0 634.3442856759214 0 634.3442856759214 0 20.457574905606748 0 0 0 1 0 0 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 2.0226 + + 18 + NaN NaN 117383.8 NaN 4880 2331 7209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7215 40.157 NaN 562420 35 0 96383 0.327 + 16392 LSHEESVSF 9 58 517.7431969828968 1033.4718410325936 2 517.7431640625 MULTI HCD FTMS 0 0 0 7214 384320.71875 0.5934307205440184 4 -0.1159820556640625 1 Unmodified _LSHEESVSF_ ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1 68.08070601005525 0.009709267492204555 2 ESSEDVS{M(Oxidation (M))|F} 8 4 67.491 0 0 6.5305 0 0 135.0913173347705 0 135.0913173347705 0 56.52162858440825 0 0 0 1.5 0 1.4802046884880937 0 ESSEDVS{M(Oxidation (M))|F} 6.5305 - 202 + NaN NaN 180038.5 NaN 4881 2332 7214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7216 40.162 NaN 290640 35 0 30076 0.261 -1 RYFHWKMNL 9 56 437.5536166994557 1309.639020698567 3 437.55377197265625 MULTI HCD FTMS 0 0 0 7214 68866.375 0.938499003518428 -2 0.043003082275390625 2 Oxidation (M) _RYFHWKM(Oxidation (M))NL_ ENSG00000117262|ENST00000313835|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENST00000478307.5_1_1:147400580-147440603:+|nuORF;ENST00000532574.5_1_1:145811866-145826998:-|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;nc|ENSG00000188092|B7ZAQ6-4|GPR89A 10.150570793230772 0.27265765907388223 2 WV 2 -1 11.454 0 0 0.87457 0 0 603.2921399370796 418.18782454263464 1021.4799644797142 0 0 0 0 0 0.5 0 0 0 WV 0.87457 - 20 + NaN NaN 123327.3 NaN 4882 2332 7214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7217 40.165 NaN 117090 35 0 13030 0.261 + 27713 TASADGTIKL 10 46 488.76911536051153 975.5236777878231 2 488.768798828125 MULTI HCD FTMS 0 0 0 7214 50727.1953125 0.6917718951916327 -2 0.043003082275390625 3 Unmodified _TASADGTIKL_ ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF 22.65808497894818 0.29917593477267174 2 [TA]{[SA]|[TG]}D 5 5 23.952 0 0 2.4553 0 0 0 527.3191622369749 527.3191622369749 0.2410497646861387 0 0 0 0 0.5 1.6989700043360187 0 0 + [TA]{[SA]|[TG]}D 2.4553 + + 17 + NaN NaN 103613.8 NaN 4883 2332 7214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7218 40.169 NaN 113010 35 0 11037 0.261 -1 IPCSDDCSLM 10 44 550.208193071713 1098.401833210226 2 550.2081909179688 MULTI HCD FTMS 0 0 0 7214 57019.203125 0.5632188538220081 -3 0.06943130493164062 4 Oxidation (M) _IPCSDDCSLM(Oxidation (M))_ ENSG00000118997|ENST00000312428|DNAH7 14.838274106304384 0.3723198072575719 2 {I|L}PTDAVD 7 -1 73.193 0 0 6.6636 0 0 0 384.03513513736567 384.03513513736567 54.21404495757898 0 0 0 0 2.1747425010840047 0 0.6989700043360187 0 {I|L}PTDAVD 6.6636 - 53 + NaN NaN 101941.2 NaN 4884 2332 7214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7219 40.172 NaN 21554 35 0 5611.9 0.261 + -1 RLSHHWEM 8 15 556.2582716471417 1110.5019903610832 2 556.2589111328125 MULTI HCD FTMS 0 0 0 7214 10022.5009765625 0.12548883348257106 42 -1.1051559448242188 5 Oxidation (M) _RLSHHWEM(Oxidation (M))_ REV__ENST00000507735.5_1_4:169819728-169819788:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84944.6 NaN 4885 2332 7214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7220 40.175 NaN 12677 35 0 4029 0.261 -1 MLRYPYFC 8 12 604.267301379535 1206.5200498258698 2 604.2682495117188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))LRYPYFC(Carbamidomethyl (C))_ ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-3|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85586.2 NaN 4886 2332 7214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7222 40.181 NaN 68013 35 0 5875.4 0.327 -1 ADKMDMSL 8 29 492.7042973904869 983.3940418477738 2 492.7043762207031 MULTI HCD FTMS 0 0 0 7221 43156.28515625 0.2309296146839678 29 -0.7541007995605469 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 13.042465956692817 0.497831663890332 2 {M(Oxidation (M))|F}S{I|L} 3 -1 30.49 0 0 3.1004 0 0 618.23149306465 0 618.23149306465 0 30.48963451112506 0 0 0 0.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}S{I|L} 3.1004 + + 4 NaN NaN 101692.9 NaN 4887 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7223 40.185 NaN 104520 35 0 8139 0.261 -1 SFHVLKNEM 9 50 560.776672382744 NaN 0 560.765869140625 PEAK HCD FTMS 0 0 0 7221 5947.1083984375 0.35555863182559255 6 -0.18189239501953125 2 Oxidation (M) _SFHVLKNEM(Oxidation (M))_ ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67 7.910154910731844 0.25691533546754686 2 VHY 3 -1 12.307 0 0 1.0993 0 0 234.12302973697837 483.2017916315063 717.3248213684847 0 0 0 0 0 0 0 0 0 VHY 1.0993 - 27 + NaN NaN 111337.5 NaN 4888 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7224 40.189 NaN 93403 35 0 17605 0.263 + -1 PLSDPCRPCCL 11 37 439.86299400465873 1316.5671526141762 3 439.8624572753906 MULTI HCD FTMS 0 0 0 7221 18819.568359375 0.337140661233295 -3 0.06615066528320312 3 2 Carbamidomethyl (C) _PLSDPC(Carbamidomethyl (C))RPC(Carbamidomethyl (C))CL_ REV__nc|ENSG00000101938|Q9BU40-5|CHRDL1;REV__nc|ENSG00000101938|Q9BU40|CHRDL1 1.214830529360525 0.41359283248740725 2 {I|L} 1 -1 19.604 0 0 1.489 0 0 1185.472591922573 0 1185.472591922573 0 19.604093769761874 0 0 0 0.5 0 0 0 {I|L} 1.489 + + 1 + NaN NaN 91878.2 NaN 4889 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7225 40.192 NaN 38677 35 0 9106 0.261 + 32627 WLSQTTSNQL 10 24 589.2980997746383 1176.5816466160766 2 589.3011474609375 MULTI HCD FTMS 0 0 0 7221 19140.693359375 0.3840758564351523 21 -0.5624923706054688 4 Unmodified _WLSQTTSNQL_ REV__ENSG00000134061|ENST00000256447|CD180 2.498486711656943 0.462078817294651 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95702.9 NaN 4890 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7226 40.195 NaN 53491 35 0 6423.9 0.262 + 3704 ELVAAPAFF 9 35 482.75863179124224 963.5027106492845 2 482.7576599121094 MULTI HCD FTMS 0 0 0 7221 19925.783203125 0.7126893338458101 -2 0.0396728515625 5 Unmodified _ELVAAPAFF_ REV__ENST00000560281.6_1_2:66662729-66662783:+|nuORF 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.6071 0 0 798.4240496158845 0 798.4240496158845 0 12.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6071 + + 13 + NaN NaN 91078.4 NaN 4891 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7227 40.199 NaN 36368 35 0 6880.5 0.261 -1 RYLEKPMEI 9 23 597.8154127553832 NaN 0 597.8148803710938 PEAK HCD FTMS 0 0 0 7221 11863.7021484375 0.07716837603250012 29 -0.7541007995605469 6 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.27934607848455584 2 K 1 -1 8.9794 0 0 0.75229 0 0 504.2292619347914 558.2705782525999 1062.4998401873913 0 0 0 0 0 0.3494850021680094 0 0 0 K 0.75229 + + 2 + NaN NaN 95216.9 NaN 4892 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7228 40.202 NaN 32990 35 0 5910.2 0.261 + 32880 WYKDHHYG 8 23 553.2453827669633 1104.4762126007265 2 553.1953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _WYKDHHYG_ ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82047.1 NaN 4893 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7229 40.205 NaN 49569 35 0 8519.7 0.261 + 28252 TLLFLRKKF 9 31 583.3769634445677 1164.7393739559352 2 583.3772583007812 MULTI HCD FTMS 0 0 0 7221 11717.4375 0.43453494012415617 -2 0.0396728515625 8 Unmodified _TLLFLRKKF_ REV__ENSG00000010671|ENST00000308731|BTK;REV__ENST00000464567.1_1_X:100629364-100630272:-|nuORF;REV__nc|ENSG00000010671|Q06187-2|BTK 0.5247636613948944 0.34703895399870666 2 G 1 -1 6.9897 0 0 0.60011 0 0 732.965095246754 371.7355135553344 1104.7006088020885 0 0 0 0 0 0 0 0 0 G 0.60011 - 3 + NaN NaN 95436.5 NaN 4894 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7230 40.208 NaN 30112 35 0 3495.4 0.261 + -1 PYREHRCD 8 26 566.7525673474037 1131.4905817616072 2 567.2596435546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _PYREHRC(Carbamidomethyl (C))D_ REV__ENSG00000169181|ENST00000447459|GSG1L;REV__nc|ENSG00000169181|Q6UXU4-2|GSG1L;REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L;REV__nc|ENSG00000169181|Q6UXU4-4|GSG1L 1.844237919475145 0.5392561982033289 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83026.1 NaN 4895 2333 7221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7232 40.214 NaN 210170 35 0 20447 0.327 -1 HPTGKMFIL 9 48 530.2863535547688 1058.5581541763374 2 530.2866821289062 MULTI HCD FTMS 0 0 0 7231 86933.671875 0.4050670705284567 14 -0.36734771728515625 1 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 2 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3790796789664 720.3790796789664 27.486512420283233 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 12 + NaN NaN 114184.1 NaN 4896 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7233 40.218 NaN 142360 35 0 20969 0.261 + 28990 TYDKGYQF 8 46 511.2356304817799 1020.4567080303598 2 511.2347717285156 MULTI HCD FTMS 0 0 0 7231 63754.015625 0.17257824111552963 10 -0.25450897216796875 2 Unmodified _TYDKGYQF_ ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;nc|ENSG00000139197|P50542-4|PEX5 37.97399986684836 0.256956040331741 2 [YT][YT][QA]Q{M(Oxidation (M))|F} 8 4 + 46.461 0 0 4.553 4.553 83.912 0 0 0 5.541134294324131 5.541134294324131 5.541134294324131 5.541134294324131 0 1.305462187404089 2 0 0.805462187404089 [YT][YT][QA]Q{M(Oxidation (M))|F};[YT]{[MG]|[TS]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{M(Oxidation (M))|F};[YT][QT]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{M(Oxidation (M))|F};[YT][TA][YQ]Q{M(Oxidation (M))|F};[YT][TA]G{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{M(Oxidation (M))|F};[YT][YT][QA]GA{M(Oxidation (M))|F};[YT][YT]QQA{M(Oxidation (M))|F};[RH]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A{M(Oxidation (M))|F};[RH]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{[CP]|[EA]}A{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[WY][YT]{M(Oxidation (M))|F} 4.553;4.01;3.5926;3.5424;3.2923;2.8548;2.3145;1.4377;1.1374;1.0264 -;-;-;-;-;-;-;-;-;- 123 + NaN NaN 111163.4 NaN 4897 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7234 40.222 NaN 98671 35 0 30202 0.261 + 433 ALDRHWHSK 9 23 575.2980135578615 1148.581474182523 2 575.2982177734375 MULTI HCD FTMS 0 0 0 7231 32577.0390625 0.7035473889971475 -1 0.033153533935546875 3 Unmodified _ALDRHWHSK_ ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 97623.4 NaN 4898 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7235 40.225 NaN 78171 35 0 17887 0.262 + 17209 LYNGKLIE 8 38 475.2717537374319 948.5289545416638 2 475.2716369628906 MULTI HCD FTMS 0 0 0 7231 27377.291015625 0.8930536674860164 -1 0.033153533935546875 4 Unmodified _LYNGKLIE_ tr|U7SYJ2|U7SYJ2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00899PE=4SV=1 16.942295170755138 0.46913822049235215 2 {I|L}Y 2 6 42.206 0 0 4.4497 0 0 0 669.3581060146423 669.3581060146423 36.721675119240516 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 4.4497 + + 6 + NaN NaN 98041 NaN 4899 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7236 40.228 NaN 30072 35 0 2868.2 0.261 + 33164 YEQDQKYSF 9 25 604.267301379535 1206.5200498258698 2 604.2673950195312 MULTI HCD FTMS 0 0 0 7231 15910.0341796875 0.5657456179554285 -2 0.056301116943359375 5 Unmodified _YEQDQKYSF_ ENSG00000115414|ENST00000354785|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-2|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1 11.494710602746466 0.2610445893512368 2 GS{M(Oxidation (M))|F} 3 7 31.198 0 0 2.5858 0 0 897.3867054669937 0 897.3867054669937 0 31.197887582883936 0 0 0 0.5 0 0 0 GS{M(Oxidation (M))|F} 2.5858 - 5 NaN NaN 89144.5 NaN 4900 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7237 40.232 NaN 24817 35 0 5815.4 0.261 -1 SWFCKRFP 8 14 564.2761927415294 NaN 0 564.2542724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _SWFC(Carbamidomethyl (C))KRFP_ ENSG00000122733|ENST00000242315|PHF24 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82429.5 NaN 4901 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7238 40.235 NaN 18701 35 0 3162 0.261 + 33077 YDLNRGHYIH 10 19 644.3157348632812 NaN 0 644.3157348632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YDLNRGHYIH_ REV__ENSG00000138744|ENST00000286733|NAAA;REV__nc|ENSG00000138744|Q02083-2|NAAA;REV__nc|ENSG00000138744|Q02083-3|NAAA 1.6526216038709556 0.33876987398426067 2 V 1 -1 5.4846 0 0 0.42662 0 0 660.2853210919938 523.2208956354124 1183.5062167274061 0 0 0 0 0 0 0 0 0 V 0.42662 - 1 + NaN NaN 85367 NaN 4902 2334 7231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7240 40.24 NaN 196800 35 0 23665 0.327 + -1 QHVILDSKM 9 54 543.7830856100551 NaN 0 543.7952880859375 PEAK HCD FTMS 0 0 0 7239 5177.62353515625 0.24124911747891367 -3 0.0827789306640625 1 Oxidation (M) _QHVILDSKM(Oxidation (M))_ REV__ENSG00000197619|ENST00000598071|ZNF615;REV__nc|ENSG00000197619|Q8N8J6-3|ZNF615;REV__nc|ENSG00000197619|Q8N8J6|ZNF615 17.11289562659939 0.20677709319598864 2 K{I|L}DTTSK 7 -1 34.518 0 0 3.1798 0 0 147.04490011489548 162.05593286685783 309.10083298175334 0 0 0 0 0 0.4247425010840047 0 0.9247425010840047 0 K{I|L}DTTSK 3.1798 - 139 + NaN NaN 119419.2 NaN 4903 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7241 40.248 NaN 313940 35 0 41740 0.261 + 25572 SFSLRCISE 9 51 521.2553762183156 NaN 0 521.2677612304688 PEAK HCD FTMS 0 0 0 7239 11864.2958984375 1 0 0 2 Unmodified _SFSLRCISE_ TRIM58|p.C36S|1|0.19|ENSG00000162722|chr1:247857352-247857352|T/A|missense_variant 13.90604991867851 0.22786006501039813 2 C{I|L}MKS{I|L} 6 7 31.732 0 0 3.0497 0 0 131.07063796771985 231.07732568912346 362.14796365684333 0 0 0 0 0 0 0 0.6861818737241735 0 C{I|L}MKS{I|L} 3.0497 - 139 + NaN NaN 131705.5 NaN 4904 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7242 40.252 NaN 401020 35 0 73265 0.261 + 8984 HPEDVEPAL 9 51 503.74615722216373 1005.4777615111275 2 503.74578857421875 MULTI HCD FTMS 0 0 0 7239 121301.1484375 1 0 0 3 Unmodified _HPEDVEPAL_ ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF 20.453626601364224 0.18364154288633264 2 EPA{I|L} 4 5 43.686 0 0 4.3448 0 0 577.2498068571714 0 577.2498068571714 0 43.68562527100117 0 0 0 0.75 0 0.4247425010840047 0 + EPA{I|L} 4.3448 + + 9 NaN NaN 147235.5 NaN 4905 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7243 40.255 NaN 17901 35 0 3159.5 0.261 + 7986 GETRQWEFGA 10 13 590.7728220360813 1179.5310911389624 2 590.7730102539062 MULTI HCD FTMS 0 0 0 7239 17813.3984375 0.7300144802915236 4 -0.12226104736328125 4 Unmodified _GETRQWEFGA_ REV__nc|ENSG00000047849|P27816-3|MAP4 1.3295316138638542 0.46826628246186464 2 T 1 -1 5.4846 0 0 0.46498 0 0 571.2721932891562 504.20295129947505 1075.4751445886313 0 0 0 0 0 0 0 0 0 T 0.46498 + + 1 + NaN NaN 78178.9 NaN 4906 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7244 40.258 NaN 47118 35 0 11775 0.261 + 7108 FRPCYLRVC 9 25 578.7911657277738 1155.5677785223475 2 579.2937622070312 MULTI HCD FTMS 0 0 0 7239 23432.703125 0.1616980520345186 70 -1.7773056030273438 5 Unmodified _FRPCYLRVC_ ENSG00000160957|ENST00000617875|RECQL4 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91999.2 NaN 4907 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7245 40.262 NaN 48038 35 0 8885.3 0.262 + 2721 DVPRAQHF 8 30 485.24844757400047 968.482342214801 2 485.2478332519531 MULTI HCD FTMS 0 0 0 7239 19972.0390625 0.896835867737442 3 -0.095794677734375 6 Unmodified _DVPRAQHF_ REV__ENSG00000187676|ENST00000343307|B3GLCT 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 87802.3 NaN 4908 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7246 40.265 NaN 29131 35 0 6718.2 0.261 + 8690 HFVQLVPIW 9 20 569.8219605622522 1137.6293681913044 2 569.821044921875 MULTI HCD FTMS 0 0 0 7239 10491.37890625 0.7770809983482863 1 -0.033203125 7 Unmodified _HFVQLVPIW_ REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90549.7 NaN 4909 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7247 40.268 NaN 8795.1 35 0 3902.6 0.261 + 23293 RHRKWYLLI 9 8 642.8851928710938 NaN 0 642.8851928710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RHRKWYLLI_ REV__ENSG00000091972|ENST00000315711|CD200;REV__nc|ENSG00000091972|P41217-3|CD200;REV__nc|ENSG00000091972|P41217|CD200 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86391.9 NaN 4910 2335 7239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7249 40.273 NaN 332850 35 0 39883 0.327 + 3334 EELEQKYTY 9 57 601.7826196093506 1201.5506862855011 2 601.7825927734375 MULTI HCD FTMS 0 0 0 7248 190508.453125 0.618998878723538 2 -0.062591552734375 1 Unmodified _EELEQKYTY_ ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 103.82355648334675 0.003950725192926219 2 TAEQKYTY 8 3 92.658 0 0 7.7115 0 0 199.08554793334753 0 199.08554793334753 0 73.75692234783578 0 0 0 2.1237125054200234 0 1.4489700043360187 0.3054621874040891 TAEQKYTY 7.7115 - 600 + NaN NaN 132730.8 NaN 4911 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7250 40.278 NaN 301130 35 0 48986 0.262 + 23622 RPNSIDPAL 9 44 491.7696051092507 981.5246572853014 2 491.76947021484375 MULTI HCD FTMS 0 0 0 7248 142459.6875 0.38194731288543815 -5 0.13250732421875 2 Unmodified _RPNSIDPAL_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 29.84058131909904 0.11198220037953927 2 [PA]D[RK]DPA{I|L} 9 4 + 51.717 0 0 5.2691 5.2691 91.969 0 0 0 2.164537177296495 44.75440627993265 2.164537177296495 51.71713116385931 0 1 0 0.7614393726401688 0 [PA]D[RK]DPA{I|L} 5.2691 - 44 NaN NaN 128046.2 NaN 4912 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7251 40.281 NaN 149820 35 0 17266 0.261 + 13128 KYLKAVEEL 9 64 546.8187208774187 1091.6228888216374 2 546.81884765625 MULTI HCD FTMS 0 0 0 7248 64104.09375 0.6664206841665103 -1 0.033203125 3 Unmodified _KYLKAVEEL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 40.23920728925047 0.06424668180817725 2 KY{I|L}[RP]{I|L} 6 5 34.411 0 0 3.1523 0 0 0 318.12226282291255 318.12226282291255 11.223637474483468 0 0 0 0 0.75 0 0 0 KY{I|L}[RP]{I|L} 3.1523 - 523 + NaN NaN 104908.7 NaN 4913 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7252 40.285 NaN 133480 35 0 28345 0.261 + 28380 TPEKSVVSL 9 48 480.27423752949215 958.5339221257843 2 480.27386474609375 MULTI HCD FTMS 0 0 0 7248 93695.6953125 0.6661073120988543 -3 0.09283447265625 4 Unmodified _TPEKSVVSL_ ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF;nc|ENSG00000103249|P51798-2|CLCN7 40.23920728925047 0.06424668180817725 2 VS{I|L} 3 6 32.945 0 0 3.4371 0 0 641.3394642560562 0 641.3394642560562 0 2.5 0 0 0 0.5 0 0.3252574989159953 0 + VS{I|L} 3.4371 + + 31 NaN NaN 103674.2 NaN 4914 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7253 40.288 NaN 92040 35 0 14307 0.261 -1 RYQQWMERF 9 36 453.88013677305685 1358.6185809193705 3 453.8806457519531 MULTI HCD FTMS 0 0 0 7248 55483.3515625 0.2511030777701296 12 -0.3076667785644531 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 21.590151480376914 0.17382222009858564 2 R{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.1922 0 0 1037.4382963508142 0 1037.4382963508142 0 -1.992333953776967 -1.992333953776967 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1922 + + 24 + NaN NaN 107682.3 NaN 4915 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7254 40.291 NaN 67843 35 0 19623 0.261 + 24912 RYRRVRLED 9 28 421.5752661339873 NaN 0 421.5751953125 PEAK HCD FTMS 0 0 0 7248 29249.123046875 0.8386808682175335 10 -0.24457931518554688 6 Unmodified _RYRRVRLED_ REV__ENSG00000160695|ENST00000621676|VPS11;REV__ENST00000524454.1_1_11:118949894-118952196:+|nuORF;REV__nc|ENSG00000160695|Q9H270|VPS11 0.235843874597859 0.29410397576755687 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93585.4 NaN 4916 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7255 40.295 NaN 233870 35 0 55609 0.261 + 13876 KYQAVTATL 9 46 497.78216046165477 993.5497679901096 2 497.7821044921875 MULTI HCD FTMS 0 0 0 7248 73302.421875 0.2930870488879809 -5 0.13250732421875 7 Unmodified _KYQAVTATL_ ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 49.55428908609986 0.03219431099695407 2 [YK]Q{[VA]|[{I|L}G]}TAT{I|L} 9 0 + 50.837 0 0 5.1167 5.1167 83.777 0 0 0 3.0102999566398125 6.099615346615792 3.0102999566398125 3.0102999566398125 0 1.8494850021680094 0 0 0 + + [YK]Q{[VA]|[{I|L}G]}TAT{I|L};[YQ]K{[VA]|[{I|L}G]}TAT{I|L};[YK][AG]{[VA]|[{I|L}G]}TAT{I|L};[YK]AA[VG]TAT{I|L} 5.1167;4.8137;4.1899;3.2361 +;-;-;- + 139 NaN NaN 116940.3 NaN 4917 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7256 40.298 NaN 62305 35 0 7615.8 0.261 -1 HPQGTCKTMN 10 39 587.261773450159 1172.508993967118 2 587.2584838867188 MULTI HCD FTMS 0 0 0 7248 11215.826171875 0.5210493388325144 1 -0.033168792724609375 8 Carbamidomethyl (C) _HPQGTC(Carbamidomethyl (C))KTMN_ ENST00000589046.1_1_19:37342773-37367701:+|nuORF 2.9952420565917617 0.4594494122822477 2 CS 2 -1 10.969 0 0 0.93552 0 0 263.1090438712179 716.3362520807249 979.4452959519429 0 0 0 0 0 0 0 0 0 CS 0.93552 - 9 + NaN NaN 90987.9 NaN 4918 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7257 40.301 NaN 79797 35 0 15962 0.262 + 25959 SPDEVAKEL 9 46 494.25327333414987 986.4919937350998 2 494.2532043457031 MULTI HCD FTMS 0 0 0 7248 18393.556640625 0.4575448024616418 6 -0.1385498046875 9 Unmodified _SPDEVAKEL_ ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4 2.9952420565917617 0.3283108881486655 2 {[QS]|[NT]}V 3 7 10.458 0 0 1.0601 0 0 0 669.3100839052747 669.3100839052747 3.4678748622465623 0 0 0 0 0 0 0 0 {[QS]|[NT]}V 1.0601 - 9 NaN NaN 93596.3 NaN 4919 2336 7248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7259 40.307 NaN 297470 35 0 36645 0.327 + 34415 YPESESIMM 9 51 559.7225021298727 1117.4304513265454 2 559.7225952148438 MULTI HCD FTMS 0 0 0 7258 169916.9375 0.5963091040374946 -6 0.16567611694335938 1 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 78.14939416004806 0.006451203201226903 2 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 80.878 0 0 7.2379 0 0 389.1578541486344 0 389.1578541486344 0 65.10335668235292 0 0 0 2.8494850021680094 0 1.274227503252014 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.2379 + + 253 NaN NaN 125552.1 NaN 4920 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7260 40.311 NaN 121040 35 0 30338 0.261 + 14241 LCFACGCWFGM 11 28 619.2358810296053 1236.4572091260104 2 619.236083984375 MULTI HCD FTMS 0 0 0 7258 57529.375 0.5673685860180846 -2 0.06637191772460938 2 Unmodified _LCFACGCWFGM_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84 3.5964929083625545 0.40314767035630406 2 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.3426392499885 1005.3426392499885 20.969100130080562 0 0 0 0 0 0 0 0 MP 1.6959 - 3 + NaN NaN 104298.8 NaN 4921 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7261 40.315 NaN 87362 35 0 10558 0.262 + 2359 DPDYICFF 8 46 510.2118655917374 1018.4091782502749 2 510.2121276855469 MULTI HCD FTMS 0 0 0 7258 54256.90625 0.9008592680606978 1 -0.029422760009765625 3 Unmodified _DPDYICFF_ REV__ENSG00000186377|ENST00000371901|CYP4X1;REV__nc|ENSG00000186377|Q8N118-2|CYP4X1;REV__nc|ENSG00000186377|Q8N118-3|CYP4X1 13.50788311687929 0.4944073034352369 2 D{I|L}E 3 -1 25.234 0 0 2.4778 0 0 0 658.2342012994749 658.2342012994749 25.233871898888154 0 0 0 0 0 0 0.3807196863200844 0 D{I|L}E 2.4778 - 10 + NaN NaN 87742.9 NaN 4922 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7262 40.318 NaN 112860 35 0 13121 0.262 -1 MKILVFFCF 9 41 407.54359202925394 NaN 0 407.5572814941406 PEAK HCD FTMS 0 0 0 7258 1722.0029296875 0.8534661773749891 -1 0.033168792724609375 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))KILVFFC(Carbamidomethyl (C))F_ CP|p.I5Vfs*78|1|0.25|ENSG00000047457|chr3:149221774-149221780|CAAGTAT/-|frameshift_variant 8.745405648335112 0.25286782695573473 2 T 1 -1 4.6041 0 0 0.56626 0 0 167.75489538487665 541.2551363580686 709.0100317429453 0 0 0 0 0 0 0 0 0 T 0.56626 - 6 + NaN NaN 103899.6 NaN 4923 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7263 40.321 NaN 69594 35 0 5842.7 0.261 -1 KYVGAVQML 9 34 512.7778961583007 1023.5412393834014 2 512.7783813476562 MULTI HCD FTMS 0 0 0 7258 33297.63671875 1 0 0 5 Oxidation (M) _KYVGAVQM(Oxidation (M))L_ ENSG00000048471|ENST00000566228|SNX29;nc|ENSG00000048471|Q8TEQ0-2|SNX29 34.40172386719151 0.0910440009062557 2 [YK]VQVQ{M(Oxidation (M))|F}{I|L} 8 -1 + 61.86 0 0 6.0437 6.0437 89.366 0 0 0 4.6040937697618745 56.37517525248825 4.6040937697618745 9.262137858390815 0 1.8494850021680094 0 0 0 [YK]VQVQ{M(Oxidation (M))|F}{I|L};[YK]V[AG]VQ{M(Oxidation (M))|F}{I|L};[YK]VQV[AG]{M(Oxidation (M))|F}{I|L};[YK]V[AG]V[AG]{M(Oxidation (M))|F}{I|L};[YK]VQV{[ES]|[DT]|[{I|L}C]}[TA];[YK]D[KG]{[QN]|[E{I|L}]|[KN]}[TA] 6.0437;5.1388;5.1388;4.2391;1.622;0.35639 -;+;-;-;-;- + 93 NaN NaN 97896.1 NaN 4924 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7264 40.325 NaN 57763 35 0 4475.9 0.261 + 9473 HPVSREWTL 9 31 562.7957071357245 1123.5768613382488 2 562.7958984375 MULTI HCD FTMS 0 0 0 7258 21937.546875 0.019648470579752917 71 -1.7829551696777344 6 Unmodified _HPVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 8.155526934196011 0.2891920862272901 2 HPV 3 6 31.198 0 0 2.7767 0 0 0 787.3739101499611 787.3739101499611 10.228787452803374 0 0 0 0 0.5 0 0 0 + HPV 2.7767 + + 10 + NaN NaN 90487.7 NaN 4925 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7265 40.331 NaN 52942 35 0 5690.5 0.261 + -1 SFMTVAEPYI 10 31 587.2801313234767 1172.5457097137532 2 587.2797241210938 MULTI HCD FTMS 0 0 0 7258 10833.337890625 0.4963722038245403 3 -0.07236480712890625 7 Oxidation (M) _SFM(Oxidation (M))TVAEPYI_ REV__ENSG00000112640|ENST00000485511|PPP2R5D;REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF;REV__nc|ENSG00000112640|Q14738-2|PPP2R5D;REV__nc|ENSG00000112640|Q14738-3|PPP2R5D 6.723162845929126 0.4397169348982109 2 V 1 -1 6.9897 0 0 0.59611 0 0 717.3090896959783 353.14570032291255 1070.454790018891 0 0 0 0 0 0 0 0 0 V 0.59611 + + 8 + NaN NaN 92370.8 NaN 4926 2337 7258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7267 40.336 NaN 69644 35 0 8685.2 0.327 -1 IPCSDDCSLM 10 26 550.208193071713 1098.401833210226 2 550.2084350585938 MULTI HCD FTMS 0 0 0 7266 58050.8828125 0.5734094811766446 3 -0.06274032592773438 1 Oxidation (M) _IPCSDDCSLM(Oxidation (M))_ ENSG00000118997|ENST00000312428|DNAH7 3.2813086475875832 0.45793521633868084 2 {I|L}PTWVD 6 -1 54.641 0 0 4.9746 0 0 0 384.0362642877563 384.0362642877563 33.672137691284405 0 0 0 0 1.3494850021680094 0 0 0 {I|L}PTWVD 4.9746 - 34 + NaN NaN 89878.1 NaN 4927 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7268 40.34 NaN 183470 35 0 14638 0.262 + -1 LFWMLQNTEI 10 56 437.5536166994557 1309.639020698567 3 437.5534362792969 MULTI HCD FTMS 0 0 0 7266 63322.91796875 0.8629537334228937 4 -0.075958251953125 2 Oxidation (M) _LFWM(Oxidation (M))LQNTEI_ REV__ENSG00000069431|ENST00000261200|ABCC9;REV__nc|ENSG00000069431|O60706|ABCC9 5.40270961882225 0.4467063037482923 2 HG 2 -1 10.573 0 0 0.80734 0 0 706.3446046861217 406.1870516412719 1112.5316563273936 0 0 0 0 0 0.5 0 0 0 HG 0.80734 - 12 + NaN NaN 114001.1 NaN 4928 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7269 40.344 NaN 87931 35 0 12724 0.261 + 27757 TATLDNTLK 9 36 488.76911536051153 975.5236777878231 2 488.7688903808594 MULTI HCD FTMS 0 0 0 7266 28531.505859375 0.3890870322993676 4 -0.075958251953125 3 Unmodified _TATLDNTLK_ ENSG00000196981|ENST00000330689|WDR5B 13.042465956692817 0.2476723265019929 2 K{I|L} 2 8 19.196 0 0 1.9678 0 0 716.3304920880875 0 716.3304920880875 0 16.096981436199016 0 0 0 0.4247425010840047 0 0 0 K{I|L} 1.9678 - 19 NaN NaN 100478.2 NaN 4929 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7270 40.347 NaN 94267 35 0 22247 0.261 + -1 KPDNECQGEQL 11 37 439.86299400465873 1316.5671526141762 3 439.8628845214844 MULTI HCD FTMS 0 0 0 7266 25276.615234375 0.4528145710425728 2 -0.042942047119140625 4 Carbamidomethyl (C) _KPDNEC(Carbamidomethyl (C))QGEQL_ REV__BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;REV__BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;REV__BRCA2|p.S727Gfs*5|1|0.11|ENSG00000139618|chr13:32336533-32336534|-/GGTTC|frameshift_variant;REV__BRCA2|p.Y839Ifs*42|1|0.11|ENSG00000139618|chr13:32336864-32336865|-/A|frameshift_variant;REV__ENSG00000139618|ENST00000380152|BRCA2 4.11662792887243 0.40086653484894175 2 {I|L} 1 -1 20.485 0 0 1.5559 0 0 1185.472820804409 0 1185.472820804409 0 20.48455006504028 0 0 0 0.5 0 0 0 {I|L} 1.5559 + + 2 + NaN NaN 95962.4 NaN 4930 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7271 40.351 NaN 62573 35 0 7237.6 0.261 + -1 HECVAPWFQ 9 38 587.261773450159 1172.508993967118 2 587.7646484375 MULTI HCD FTMS 0 0 0 7266 24878.798828125 0.8303873945371513 1 -0.02646636962890625 5 Carbamidomethyl (C) _HEC(Carbamidomethyl (C))VAPWFQ_ REV__ENSG00000127948|ENST00000461988|POR;REV__POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant 1.844237919475145 0.33703635659052655 2 V[YT]SC[MN] 7 -1 18.996 0 0 1.6201 0 0 356.16841323066564 0 356.16841323066564 0 18.996294548824366 0 0 0 0 0 0 0 V[YT]SC[MN] 1.6201 - 9 NaN NaN 98113.6 NaN 4931 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7272 40.354 NaN 56192 35 0 8716.8 0.261 -1 NYIMKIHNF 9 31 598.3005374036019 1194.5865218740037 2 598.3001708984375 MULTI HCD FTMS 0 0 0 7266 29178.30859375 0.9753328366343447 -3 0.095794677734375 6 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 19.256988751693697 0.19398022840297344 2 [YN]{I|L}D 4 -1 44.693 0 0 3.7413 0 0 0 686.3620089166624 686.3620089166624 44.69273760456403 0 0 0 0 0.8494850021680094 2 0 0 [YN]{I|L}D 3.7413 - 14 + NaN NaN 94746.8 NaN 4932 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7273 40.357 NaN 48119 35 0 10349 0.261 + -1 TWCSGCAGQN 10 25 570.7137811694685 1139.4130094057368 2 570.7133178710938 MULTI HCD FTMS 0 0 0 7266 20641.994140625 0.5783427944405726 -2 0.062591552734375 7 2 Carbamidomethyl (C) _TWC(Carbamidomethyl (C))SGC(Carbamidomethyl (C))AGQN_ REV__ENSG00000103811|ENST00000220166|CTSH;REV__ENST00000528191.5_1_15:79224365-79229419:-|nuORF;REV__ENST00000533777.5_1_15:79224365-79230096:-|nuORF;REV__ENST00000534038.5_1_15:79224365-79237386:-|nuORF 3.5964929083625545 0.45626689593999237 2 YPE 3 -1 30.445 0 0 2.672 0 0 0 747.2332661556861 747.2332661556861 19.47621246364342 0 0 0 0 0 0 0.4247425010840047 0 YPE 2.672 - 7 + NaN NaN 93700.9 NaN 4933 2338 7266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7275 40.362 NaN 151040 35 0 14676 0.327 -1 HPTGKMFIL 9 45 530.2863535547688 1058.5581541763374 2 530.2864990234375 MULTI HCD FTMS 0 0 0 7274 70348.1015625 0.32778667692920593 19 -0.46300506591796875 1 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 18.1463463914782 0.20357593197100715 2 HPT 3 -1 33.94 0 0 3.2063 0 0 0 720.3769014947874 720.3769014947874 3.7751372576825304 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.2063 + + 33 + NaN NaN 116823.4 NaN 4934 2339 7274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7276 40.367 NaN 97024 35 0 9936.3 0.261 + 17663 MADEFHSTL 9 47 533.729295261343 1065.444037589486 2 533.7291870117188 MULTI HCD FTMS 0 0 0 7274 53616.84765625 0.8255506974101144 -1 0.02646636962890625 2 Oxidation (M) _M(Oxidation (M))ADEFHSTL_ ENST00000434600.6_2_X:119590527-119590569:-|nuORF 61.357469665136826 0.01568246967499496 2 {[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F} 5 4 51.739 0 0 4.8561 0 0 0 453.20810877017817 453.20810877017817 38.80719686320084 0 0 0 0 1.305462187404089 1.5228787452803376 0.4247425010840047 0 + {[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F} 4.8561 + + 41 + NaN NaN 98356.7 NaN 4935 2339 7274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7277 40.37 NaN 49027 35 0 10492 0.261 -1 HPDVTEAML 9 29 514.7396602112394 1027.4647674892788 2 514.7391967773438 MULTI HCD FTMS 0 0 0 7274 18487.130859375 0.3043115065456444 13 -0.3378143310546875 3 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.5275 0 0 749.3364124982437 0 749.3364124982437 0 15.511525224473813 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.5275 + + 5 NaN NaN 88763.1 NaN 4936 2339 7274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7278 40.374 NaN 43104 35 0 4220.2 0.261 + -1 FEDAEDIMM 9 31 566.7122352000214 1131.4099174668427 2 566.7114868164062 MULTI HCD FTMS 0 0 0 7274 20732.759765625 0.7794104625063053 -4 0.12226104736328125 4 2 Oxidation (M) _FEDAEDIM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000102786|ENST00000311234|INTS6;REV__ENSG00000165359|ENST00000639893|INTS6L;REV__nc|ENSG00000102786|Q9UL03-3|INTS6;REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L;REV__nc|ENSG00000165359|Q5JSJ4|INTS6L 8.593279151180031 0.2858735984551981 2 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 35.918 0 0 3.1746 0 0 619.2118106326615 0 619.2118106326615 0 35.828956512079344 0 0 0 1 0 0 0 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1746 - 11 + NaN NaN 102473.3 NaN 4937 2339 7274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7280 40.379 NaN 152480 35 0 17536 0.327 + -1 QHVILDSKM 9 45 543.7830856100551 NaN 0 543.795166015625 PEAK HCD FTMS 0 0 0 7279 5408.83203125 0.25202217682892314 2 -0.033016204833984375 1 Oxidation (M) _QHVILDSKM(Oxidation (M))_ REV__ENSG00000197619|ENST00000598071|ZNF615;REV__nc|ENSG00000197619|Q8N8J6-3|ZNF615;REV__nc|ENSG00000197619|Q8N8J6|ZNF615 17.11289562659939 0.20677709319598864 2 {M(Oxidation (M))|F}{I|L}DT 4 -1 23.532 0 0 2.1677 0 0 128.071443559304 478.22968469791255 606.3011282572165 0 0 0 0 0 0 0 0.8494850021680094 0 {M(Oxidation (M))|F}{I|L}DT 2.1677 - 48 + NaN NaN 106878.5 NaN 4938 2340 7279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7281 40.383 NaN 238040 35 0 18803 0.261 + 6833 FPSTAEHTL 9 50 501.7484743815655 1001.482395829931 2 501.7482604980469 MULTI HCD FTMS 0 0 0 7279 109432.6484375 0.6255098122047698 -4 0.10553359985351562 2 Unmodified _FPSTAEHTL_ ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF 78.14939416004806 0.006451203201226903 2 {I|L}MST 4 7 59.686 0 0 5.9597 0 0 0 566.2588595025999 566.2588595025999 16.237125054200234 0 0 0 0 0.9247425010840047 1.6989700043360187 1.3807196863200843 0 {I|L}MST 5.9597 - 119 + NaN NaN 130350.2 NaN 4939 2340 7279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7282 40.387 NaN 78843 35 0 12819 0.261 -1 0 23 616.6633658350829 1846.9682681054487 3 616.6630859375 MULTI HCD FTMS 0 0 0 7279 17958.62890625 0.5632775351834891 -1 0.016475677490234375 3 NaN NaN 2 DM 2 -1 7.9588 0 0 0.43091 0 0 1152.57399427908 445.3155611627563 1597.8895554418361 0 0 0 0 0 0 0 0 0 DM 0.43091 - 3 + NaN NaN 95478.5 NaN 4940 2340 7279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7283 40.39 NaN 22272 35 0 5283 0.261 -1 FCIYWGQYA 9 19 604.267301379535 1206.5200498258698 2 604.7689208984375 MULTI HCD FTMS 0 0 0 7279 8418.4443359375 0.3506965652635881 4 -0.08929443359375 4 Carbamidomethyl (C) _FC(Carbamidomethyl (C))IYWGQYA_ ENSG00000167619|ENST00000301204|TMEM145 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 86538.1 NaN 4941 2340 7279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7284 40.393 NaN 22550 35 0 3204.1 0.261 + 20908 PKIKFHLGIL 10 18 583.3769634445677 1164.7393739559352 2 583.3779296875 MULTI HCD FTMS 0 0 0 7279 10644.4990234375 0.3947455871474504 5 -0.11583328247070312 5 Unmodified _PKIKFHLGIL_ REV__ENSG00000111196|ENST00000320756|MAGOHB;REV__ENSG00000162385|ENST00000371470|MAGOH;REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF;REV__nc|ENSG00000162385|P61326-2|MAGOH 0.4007161486938917 0.47318265037741464 2 G 1 -1 6.9897 0 0 0.60011 0 0 632.4149243483165 472.28708826236567 1104.7020126106822 0 0 0 0 0 0 0 0 0 G 0.60011 + + 2 + NaN NaN 90678 NaN 4942 2340 7279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7286 40.399 NaN 350190 35 0 101500 0.327 + 8985 HPEDVEPAL 9 43 503.74615722216373 1005.4777615111275 2 503.74554443359375 MULTI HCD FTMS 0 0 0 7285 75168.8671875 0.619688009188392 6 -0.15913772583007812 1 Unmodified _HPEDVEPAL_ ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF 10.823927491677226 0.26684000660059787 2 EPA{I|L} 4 5 34.68 0 0 3.4492 0 0 577.2494374005875 0 577.2494374005875 0 34.680475292681265 0 0 0 0.4247425010840047 0 0 0 + EPA{I|L} 3.4492 + + 14 NaN NaN 140560.6 NaN 4943 2341 7285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7287 40.403 NaN 37349 35 0 6288.1 0.261 -1 YYDCCCGSGS 10 19 586.178253552793 1170.3419541723858 2 586.177734375 MULTI HCD FTMS 0 0 0 7285 22238.89453125 1 0 0 2 2 Carbamidomethyl (C) _YYDC(Carbamidomethyl (C))C(Carbamidomethyl (C))CGSGS_ L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|75|3|anti-sense 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90645.8 NaN 4944 2341 7285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7288 40.407 NaN 15222 35 0 4488.3 0.261 + -1 KSPMQVNQLM 10 15 604.2926451754106 1206.570737417621 2 604.2932739257812 MULTI HCD FTMS 0 0 0 7285 17422.28125 0.9585062436844293 1 -0.013217926025390625 3 2 Oxidation (M) _KSPM(Oxidation (M))QVNQLM(Oxidation (M))_ REV__ENSG00000197635|ENST00000360534|DPP4;REV__ENST00000434918.6_1_2:162849795-162888681:-|nuORF 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87881.7 NaN 4945 2341 7285 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7290 40.412 NaN 573460 35 0 91015 0.327 + 23623 RPNSIDPAL 9 43 491.7696051092507 981.5246572853014 2 491.76953125 MULTI HCD FTMS 0 0 0 7289 343326.65625 0.9204898318805453 1 -0.036441802978515625 1 Unmodified _RPNSIDPAL_ ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF 40.23920728925047 0.06424668180817725 2 [PA]D[RK]DPA{I|L} 9 4 + 74.403 0 0 7.5803 7.5803 94.076 0 0 0 18.93553046518285 16.478174818886373 16.478174818886373 18.93553046518285 0 1.4247425010840047 1.6989700043360187 0.7302046884880937 0 [PA]D[RK]DPA{I|L};[RP][NS]{I|L}DPA{I|L} 7.5803;5.6511 -;+ + 74 NaN NaN 172057.2 NaN 4946 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7291 40.416 NaN 112670 35 0 24739 0.261 + 28381 TPEKSVVSL 9 39 480.27423752949215 958.5339221257843 2 480.27392578125 MULTI HCD FTMS 0 0 0 7289 91888.1953125 0.6532573197635282 3 -0.08281707763671875 2 Unmodified _TPEKSVVSL_ ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF;nc|ENSG00000103249|P51798-2|CLCN7 24.881564428377168 0.14538514251145815 2 VS{I|L} 3 6 33.188 0 0 3.4623 0 0 641.3370147078834 0 641.3370147078834 0 12.385606273598313 0 0 0 1 0 0 0 + VS{I|L} 3.4623 + + 24 NaN NaN 96209.6 NaN 4947 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7292 40.42 NaN 79024 35 0 8123.7 0.261 + 13129 KYLKAVEEL 9 48 546.8187208774187 1091.6228888216374 2 546.8185424804688 MULTI HCD FTMS 0 0 0 7289 31851.06640625 0.3311209662937647 5 -0.1459197998046875 3 Unmodified _KYLKAVEEL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 8.155526934196011 0.2891920862272901 2 KY 2 7 20.969 0 0 1.9209 0 0 0 797.4431856744749 797.4431856744749 10.511525224473813 0 0 0 0 0 0 0 0 + KY 1.9209 + + 29 + NaN NaN 88338.1 NaN 4948 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7293 40.423 NaN 156180 35 0 24544 0.261 + 9411 HPTTTEYTF 9 39 548.7510659670654 1095.4875790009307 2 548.7509765625 MULTI HCD FTMS 0 0 0 7289 58505.6640625 0.42981212692096743 -4 0.075958251953125 4 Unmodified _HPTTTEYTF_ L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense 34.10243960390752 0.09241788333544565 2 YT{M(Oxidation (M))|F} 3 6 43.5 0 0 3.9708 0 0 666.298627440187 0 666.298627440187 0 25.541134294324124 0 0 0 1.5 0 0.3807196863200844 0 + YT{M(Oxidation (M))|F} 3.9708 + + 14 + NaN NaN 101050 NaN 4949 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7294 40.427 NaN 162180 35 0 21074 0.261 + 31412 VYANGIRNI 9 54 510.2853563097824 1018.5561596863648 2 510.2852478027344 MULTI HCD FTMS 0 0 0 7289 45227.89453125 0.44716025298838924 -3 0.04949188232421875 5 Unmodified _VYANGIRNI_ ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 46.020951573049366 0.037705236580089195 2 [YV]AN{[VA]|[{I|L}G]}R{[QV]|[N{I|L}]|[RA]|[KV]} 9 0 + 61.562 0 0 6.044 6.044 88.619 0 0 0 54.572326458305355 4.762036441594191 4.762036441594191 9.208187539523749 0 1.5941876774005248 2 0 0.4247425010840047 + + [YV]AN{[VA]|[{I|L}G]}R{[QV]|[N{I|L}]|[RA]|[KV]};[YV]AGG{[VA]|[{I|L}G]}R{[QV]|[N{I|L}]|[RA]|[KV]};[YV]A[Q{I|L}][QA]{[QV]|[N{I|L}]|[RA]|[KV]};[YV][RN][Q{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]};[RN][KT][VS]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6.044;5.14;3.6241;3.0883;0.084551 +;-;-;-;- + 57 + NaN NaN 110112 NaN 4950 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7295 40.43 NaN 44860 35 0 5919 0.261 + 3335 EELEQKYTY 9 28 601.7826196093506 1201.5506862855011 2 601.7822265625 MULTI HCD FTMS 0 0 0 7289 30071.90234375 0.0977094376996033 8 -0.23208999633789062 6 Unmodified _EELEQKYTY_ ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 21.536976647645854 0.1742816388551942 2 Q{[MS]|[{M(Oxidation (M))|F}A]}TY 5 6 35.445 0 0 2.95 0 0 573.2805042951187 0 573.2805042951187 0 24.987737688117235 0 0 0 0.9247425010840047 0 1 0 Q{[MS]|[{M(Oxidation (M))|F}A]}TY 2.95 - 43 NaN NaN 107584.4 NaN 4951 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7296 40.433 NaN 51923 35 0 14350 0.261 + 35662 YYIREERQ 8 21 578.7911657277738 1155.5677785223475 2 579.2929077148438 MULTI HCD FTMS 0 0 0 7289 21746.361328125 0.15006140123224043 77 -1.9774971008300781 7 Unmodified _YYIREERQ_ ENSG00000158023|ENST00000288912|CFAP251;ENST00000540779.1_1_12:122359430-122370014:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;nc|ENSG00000158023|Q8TBY9-3|CFAP251 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101267.4 NaN 4952 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7297 40.437 NaN 42560 35 0 6985.7 0.261 + -1 VDCDMCDD 8 29 494.6391524328715 987.2637519325431 2 494.6392822265625 MULTI HCD FTMS 0 0 0 7289 14859.70703125 0.8331463504723521 1 -0.036441802978515625 8 Carbamidomethyl (C),Oxidation (M) _VDC(Carbamidomethyl (C))DM(Oxidation (M))CDD_ REV__ENSG00000048707|ENST00000620676|VPS13D;REV__ENST00000460333.5_1_1:12359354-12409038:+|nuORF;REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF;REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D;REV__VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant 0 0.5419923896992614 2 V 1 -1 5.4846 0 0 0.55553 0 0 215.79837214914306 669.3767794244749 885.175151573618 0 0 0 0 0 0 0 0 0 V 0.55553 + + 1 + NaN NaN 90979.6 NaN 4953 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7298 40.44 NaN 17555 35 0 6112.4 0.261 + 23690 RQMKQMHWK 9 12 636.826087055338 NaN 0 636.8256225585938 PEAK HCD FTMS 0 0 0 7289 3449.224853515625 0.3155886723524351 1 -0.036441802978515625 9 Unmodified _RQMKQMHWK_ REV__ENSG00000101040|ENST00000471951|ZMYND8;REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF;REV__nc|ENSG00000101040|Q9ULU4-10|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-11|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-18|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-20|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4-5|ZMYND8;REV__nc|ENSG00000101040|Q9ULU4|ZMYND8 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87069.5 NaN 4954 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7299 40.443 NaN 18580 35 0 4455 0.261 -1 MPSSFFFFL 9 18 590.7728220360813 1179.5310911389624 2 590.7740478515625 MULTI HCD FTMS 0 0 0 7289 10782.8349609375 0.4418935380408408 11 -0.3147010803222656 10 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))PSSFFFFL_ ENST00000330459.7_1_17:66031669-66031822:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87230.1 NaN 4955 2342 7289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7301 40.448 NaN 319970 35 0 76666 0.327 + 13877 KYQAVTATL 9 38 497.78216046165477 993.5497679901096 2 497.78204345703125 MULTI HCD FTMS 0 0 0 7300 167169.65625 0.6683989418177831 2 -0.046375274658203125 1 Unmodified _KYQAVTATL_ ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 60.07390631473393 0.0174780869009295 2 TAT{I|L} 4 5 50.745 0 0 5.1075 0 0 589.3218164360261 0 589.3218164360261 0 33.632359729264536 0 0 0 1.5 0 0.3807196863200844 0 + TAT{I|L} 5.1075 + + 79 NaN NaN 129948.4 NaN 4956 2343 7300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7302 40.453 NaN 68969 35 0 15661 0.261 + 24031 RWLYEARLR 9 31 421.5752661339873 NaN 0 421.574951171875 PEAK HCD FTMS 0 0 0 7300 21961.583984375 0.6297200874682559 17 -0.42669677734375 2 Unmodified _RWLYEARLR_ REV__ENSG00000137474|ENST00000409709|MYO7A;REV__ENST00000481328.7_1_11:76890894-76905079:+|nuORF;REV__nc|ENSG00000137474|Q13402-2|MYO7A;REV__nc|ENSG00000137474|Q13402-3|MYO7A;REV__nc|ENSG00000137474|Q13402-4|MYO7A;REV__nc|ENSG00000137474|Q13402-5|MYO7A;REV__nc|ENSG00000137474|Q13402-6|MYO7A;REV__nc|ENSG00000137474|Q13402-7|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A 1.1933415558491238 0.28946407562688115 2 R 1 -1 3.4949 0 0 0.41549 0 0 212.78809222715591 469.2312410943969 682.0193333215528 0 0 0 0 0 0 0 0 0 R 0.41549 + + 1 + NaN NaN 87936.5 NaN 4957 2343 7300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7303 40.456 NaN 73788 35 0 10971 0.261 -1 RYQQWMERF 9 37 453.88013677305685 1358.6185809193705 3 453.88018798828125 MULTI HCD FTMS 0 0 0 7300 31482.328125 0.14248074899822097 19 -0.48627471923828125 3 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 8.97624648632007 0.2828035605319045 2 W 1 -1 15.044 0 0 1.1073 0 0 575.282461433258 594.2366434481905 1169.5191048814486 0 0 0 0 0 0.805462187404089 0 0 0 W 1.1073 + + 10 + NaN NaN 113994.5 NaN 4958 2343 7300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7304 40.46 NaN 39001 35 0 3950.5 0.261 + -1 WEMLDYMM 8 29 575.7177704464307 1149.4209879596613 2 575.7173461914062 MULTI HCD FTMS 0 0 0 7300 13425.365234375 0.7528506586716429 3 -0.06958770751953125 4 2 Oxidation (M) _WEMLDYM(Oxidation (M))M(Oxidation (M))_ REV__DOCK2|p.K268Rfs*9|1|0.19|ENSG00000134516|chr5:169689292-169689292|A/-|frameshift_variant;REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF 14.581692164780916 0.48650662947107914 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.2593 0 0 837.3375721662125 0 837.3375721662125 0 20.48455006504028 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2593 + + 8 NaN NaN 106763.2 NaN 4959 2343 7300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7305 40.463 NaN 40912 35 0 8161.1 0.262 -1 GRGGVWCC 8 23 476.1984982124427 NaN 0 476.1983947753906 PEAK HCD FTMS 0 0 0 7300 10670.7822265625 0.644429051581425 12 -0.30774688720703125 5 2 Carbamidomethyl (C) _GRGGVWC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENST00000546412.1_1_14:26305080-26305155:-|nuORF 0.7936320650641473 0.38822285293237185 2 T 1 -1 5.4846 0 0 0.57709 0 0 321.5523176145354 524.7508028619749 846.3031204765102 0 0 0 0 0 0 0 0 0 T 0.57709 - 1 + NaN NaN 94990.6 NaN 4960 2343 7300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7307 40.468 NaN 464110 35 0 63685 0.327 + 34416 YPESESIMM 9 50 559.7225021298727 1117.4304513265454 2 559.7227172851562 MULTI HCD FTMS 0 0 0 7306 242042.40625 0.8494273292208835 1 -0.026538848876953125 1 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 81.61307344734483 0.005330412723537057 2 [{M(Oxidation (M))|F}T]{[HG]|PP}YS{I|L}{M(Oxidation (M))|F}T 9 6 72.413 0 0 6.4803 0 0 0 60.976329307011525 60.976329307011525 55.15031251017078 0 0 0 0 2 0 2.353917193908117 0 [{M(Oxidation (M))|F}T]{[HG]|PP}YS{I|L}{M(Oxidation (M))|F}T 6.4803 - 418 NaN NaN 162865.6 NaN 4961 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7308 40.473 NaN 118460 35 0 35501 0.261 + -1 LCCACWFFM 9 22 619.2358810296053 1236.4572091260104 2 619.2359008789062 MULTI HCD FTMS 0 0 0 7306 88317.7421875 0.8710108966981062 5 -0.14599990844726562 2 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))C(Carbamidomethyl (C))ACWFFM_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF;REV__nc|ENSG00000123843|P20851-2|C4BPB 5.230669730166228 0.3113646817964458 2 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.3412254382205 1005.3412254382205 20.969100130080562 0 0 0 0 0 0 0 0 MP 1.6959 - 2 + NaN NaN 102308.2 NaN 4962 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7309 40.476 NaN 93438 35 0 17111 0.264 + 21378 PVCNGCDDL 9 39 468.18360216242473 934.3526513916495 2 468.183349609375 MULTI HCD FTMS 0 0 0 7306 53651.80078125 1 0 0 3 Unmodified _PVCNGCDDL_ REV__ENSG00000138193|ENST00000371380|PLCE1 4.3292370932331545 0.3181982124262546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103925 NaN 4963 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7310 40.48 NaN 78853 35 0 7429.5 0.261 + 5573 FLLYQHFRP 9 36 407.55743365625244 1219.6504715689573 3 407.55731201171875 MULTI HCD FTMS 0 0 0 7306 41925.0703125 0.05821078543035427 30 -0.7943458557128906 4 Unmodified _FLLYQHFRP_ ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.393 0 0 1054.571535877354 0 1054.571535877354 0 13.010299956639813 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.393 + + 3 + NaN NaN 88269.6 NaN 4964 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7311 40.483 NaN 46803 35 0 5180.8 0.261 -1 CAEAVAMAMM 10 30 566.7122352000214 1131.4099174668427 2 566.7120971679688 MULTI HCD FTMS 0 0 0 7306 25126.61328125 0.9445894082671231 1 -0.026538848876953125 5 Carbamidomethyl (C),3 Oxidation (M) _C(Carbamidomethyl (C))AEAVAM(Oxidation (M))AM(Oxidation (M))M(Oxidation (M))_ ENST00000394705.2_1_2:54081959-54087122:-|nuORF;ENST00000498475.2_1_2:53956703-54087122:-|nuORF 15.847184025352803 0.36288280428275715 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.1623 0 0 819.3278065412125 0 819.3278065412125 0 11.276362525516532 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1623 + + 8 NaN NaN 90627.1 NaN 4965 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7312 40.486 NaN 44415 35 0 5206.4 0.261 + 9292 HPPFDERVK 9 24 562.7957071357245 1123.5768613382488 2 562.7957763671875 MULTI HCD FTMS 0 0 0 7306 17695.115234375 0.01584871604236537 78 -2.0036849975585938 6 Unmodified _HPPFDERVK_ REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF 6.723162845929126 0.3000504726104499 2 HPV 3 -1 31.198 0 0 2.7767 0 0 0 787.3741225817134 787.3741225817134 25.713337517843655 0 0 0 0 0.5 0 0 0 HPV 2.7767 - 9 + NaN NaN 91515.8 NaN 4966 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7313 40.49 NaN 43707 35 0 7152.8 0.262 -1 MPSPVSPKL 9 36 486.2648599756756 NaN 0 486.2652282714844 PEAK HCD FTMS 0 0 0 7306 11207.396484375 0.2495474761865622 -12 0.3108100891113281 7 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 13.042465956692817 0.23204487237355156 2 S 1 -1 16.237 0 0 1.673 0 0 244.08836145350125 636.3714693658811 880.4598308193824 0 0 0 0 0 0.5 0 0.4247425010840047 0 S 1.673 + + 6 + NaN NaN 86529.1 NaN 4967 2344 7306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7315 40.495 NaN 51828 35 0 10831 0.327 -1 YEPYGMYSD 9 25 570.7137811694685 1139.4130094057368 2 570.7139892578125 MULTI HCD FTMS 0 0 0 7314 28191.255859375 0.7898563279025542 5 -0.14927291870117188 1 Oxidation (M) _YEPYGM(Oxidation (M))YSD_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 1.844237919475145 0.33703635659052655 2 YPE 3 -1 26.198 0 0 2.2992 0 0 0 747.2296236627561 747.2296236627561 26.197887582883936 0 0 0 0 0 0 0 0 YPE 2.2992 - 6 + NaN NaN 93717.2 NaN 4968 2345 7314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7316 40.499 NaN 63315 35 0 14368 0.262 + 32521 WGRGGKGAL 9 27 451.2544482715036 NaN 0 451.2403259277344 PEAK HCD FTMS 0 0 0 7314 7388.96875 0.7717233012927018 6 -0.17244338989257812 2 Unmodified _WGRGGKGAL_ REV__ENST00000494593.1_1_11:67351648-67351816:+|nuORF 2.0597508629832335 0.2852655770354268 2 A 1 -1 6.9897 0 0 0.77621 0 0 131.12319637031698 695.311730838031 826.434927208348 0 0 0 0 0 0 0 0 0 A 0.77621 + + 1 + NaN NaN 90396.4 NaN 4969 2345 7314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7317 40.503 NaN 34502 35 0 5212.3 0.261 + -1 QEFAVNEKM 9 25 556.2582716471417 1110.5019903610832 2 556.2593994140625 MULTI HCD FTMS 0 0 0 7314 5502.89404296875 0.06890014337191734 55 -1.4011688232421875 3 Oxidation (M) _QEFAVNEKM(Oxidation (M))_ REV__ENSG00000103642|ENST00000261893|LACTB;REV__nc|ENSG00000103642|P83111-2|LACTB 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88420.7 NaN 4970 2345 7314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7318 40.506 NaN 13936 35 0 3077.6 0.261 -1 PIHCHLPFC 9 14 590.7728220360813 1179.5310911389624 2 590.7725219726562 MULTI HCD FTMS 0 0 0 7314 8248.96484375 0.3380524948387298 14 -0.3604927062988281 4 2 Carbamidomethyl (C) _PIHC(Carbamidomethyl (C))HLPFC(Carbamidomethyl (C))_ ENST00000274867.8_1_6:39871034-39871253:+|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89348.4 NaN 4971 2345 7314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7319 40.509 NaN 37412 35 0 4386.8 0.262 + -1 EQGGKERC 8 28 482.21791102372276 NaN 0 482.23358154296875 PEAK HCD FTMS 0 0 0 7314 6851.654296875 1 0 0 5 Carbamidomethyl (C) _EQGGKERC(Carbamidomethyl (C))_ REV__ENSG00000132780|ENST00000350030|NASP;REV__nc|ENSG00000132780|P49321-3|NASP;REV__nc|ENSG00000132780|P49321-4|NASP 1.844237919475145 0.38822285293237185 2 K 1 -1 3.9794 0 0 0.41348 0 0 371.14473210428304 460.16806970767817 831.3128018119612 0 0 0 0 0 0 0 0 0 K 0.41348 + + 1 + NaN NaN 106339.7 NaN 4972 2345 7314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7320 40.513 NaN 20531 35 0 2453.5 0.261 -1 VRRRRKRP 8 24 583.3769634445677 1164.7393739559352 2 583.3770751953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VRRRRKRP_ ENST00000496820.2_2_20:62369235-62369332:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102890.9 NaN 4973 2345 7314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7322 40.518 NaN 314010 35 0 23799 0.327 + 6834 FPSTAEHTL 9 61 501.7484743815655 1001.482395829931 2 501.7481994628906 MULTI HCD FTMS 0 0 0 7321 158411.84375 0.9054716672754732 2 -0.06308746337890625 1 Unmodified _FPSTAEHTL_ ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF 103.74828524460852 0.00396301343438984 2 {I|L}MST{[CP]|[EA]}H 7 4 72.897 0 0 7.2789 0 0 0 229.11922632388908 229.11922632388908 24.493106925747412 0 0 0 0 1.8807196863200843 1.6989700043360187 1.7302046884880937 0 {I|L}MST{[CP]|[EA]}H 7.2789 - 265 + NaN NaN 129039.9 NaN 4974 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7323 40.522 NaN 308740 35 0 40296 0.261 + 1259 AYLSKAMEI 9 46 521.2679795825817 1040.5214062319633 2 521.267822265625 MULTI HCD FTMS 0 0 0 7321 126888.2890625 1 0 0 2 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ ENSG00000124784|ENST00000379834|RIOK1 71.70789743142352 0.008535567138151097 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKA{M(Oxidation (M))|F}E{I|L} 9 0 + 84.536 0 0 8.1244 8.1244 87.708 0 0 0 3.252574989159953 3.252574989159953 3.252574989159953 0.22878745280337398 0 2.548455006504028 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKA{M(Oxidation (M))|F}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKMSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[TA]S{I|L}C{I|L} 8.1244;8.1024;6.6014 +;-;- + 214 NaN NaN 139550.7 NaN 4975 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7324 40.526 NaN 133660 35 0 13694 0.261 + 11916 KFIDTTSKF 9 53 543.7950986694144 1085.5756444056287 2 543.7953491210938 MULTI HCD FTMS 0 0 0 7321 82670.0078125 0.00990857406349781 45 -1.1345367431640625 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 55.23464941255904 0.024247875903973527 2 K{M(Oxidation (M))|F}{I|L}DGP 6 5 54.302 0 0 5.0021 0 0 0 425.1984041803344 425.1984041803344 23.8566032266867 0 0 0 0 1.305462187404089 0 0.4247425010840047 0 K{M(Oxidation (M))|F}{I|L}DGP 5.0021 - 130 + NaN NaN 109991.3 NaN 4976 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7325 40.529 NaN 163930 35 0 21759 0.263 + 19010 NAVAGESAL 9 30 416.214281228684 830.414009524168 2 416.21435546875 MULTI HCD FTMS 0 0 0 7321 66641.484375 0.7762247517500549 -1 0.023212432861328125 4 Unmodified _NAVAGESAL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 32.78568957990786 0.09846250359632436 2 {[QG]|[NA]}VA{[DA]|[EG]}{[SA]|[TG]}{I|L} 9 0 + 35.224 0 0 4.2418 4.2418 89.88 0 0 0 30.620149727660298 9.22044985140652 9.22044985140652 35.22424349742217 0 1.6861818737241734 0 0 0 + + {[QG]|[NA]}VA{[DA]|[EG]}{[SA]|[TG]}{I|L} 4.2418 + + 17 + NaN NaN 109818.2 NaN 4977 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7326 40.533 NaN 103090 35 0 8334.6 0.261 -1 HPTGKMFIL 9 34 530.2863535547688 1058.5581541763374 2 530.2864990234375 MULTI HCD FTMS 0 0 0 7321 44144.03515625 0.20568894211392 26 -0.6710014343261719 5 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 10.073929032068715 0.27331982688540024 2 HPT 3 -1 35.445 0 0 3.3485 0 0 0 720.3752134193642 720.3752134193642 28.455612550363796 0 0 0 0 0.5 0 0.4247425010840047 0 HPT 3.3485 + + 8 + NaN NaN 99534.3 NaN 4978 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7327 40.536 NaN 37104 35 0 3925.8 0.261 + -1 FEDAEDIMM 9 32 566.7122352000214 1131.4099174668427 2 566.711669921875 MULTI HCD FTMS 0 0 0 7321 22007.083984375 0.827316367940356 3 -0.09624862670898438 6 2 Oxidation (M) _FEDAEDIM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000102786|ENST00000311234|INTS6;REV__ENSG00000165359|ENST00000639893|INTS6L;REV__nc|ENSG00000102786|Q9UL03-3|INTS6;REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L;REV__nc|ENSG00000165359|Q5JSJ4|INTS6L 12.531546534597751 0.2520865569484384 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.1623 0 0 819.327928611525 0 819.327928611525 0 17.47425010840047 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1623 + + 6 NaN NaN 104447.2 NaN 4979 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7328 40.539 NaN 53033 35 0 5111.4 0.263 -1 AAGVGDMVM 9 39 441.6886119108282 881.3626708884564 2 441.6885986328125 MULTI HCD FTMS 0 0 0 7321 19600.408203125 0.8483195462017755 2 -0.06308746337890625 7 2 Oxidation (M) _AAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 36.04419817259434 0.08350412372117409 2 [QA]V[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 + 36.916 0 0 4.1885 4.1885 89.898 0 0 0 26.11941264025134 10.150312510170778 10.150312510170778 36.91630954681237 0 1.2302046884880937 0 0 0 [QA]V[DG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.1885 - 26 + NaN NaN 102826.2 NaN 4980 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7329 40.543 NaN 137980 35 0 43735 0.261 + -1 MVCWHAVI 8 27 487.7327431263528 973.4509333195056 2 487.7325744628906 MULTI HCD FTMS 0 0 0 7321 30772.83203125 0.1633973622442702 -5 0.1192474365234375 8 Oxidation (M) _M(Oxidation (M))VCWHAVI_ REV__ENSG00000260903|ENST00000562532|XKR7 6.354104778181461 0.5325651638111438 2 V{I|L} 2 -1 25.217 0 0 2.5904 0 0 743.2862672884052 0 743.2862672884052 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.5904 + + 4 NaN NaN 104192 NaN 4981 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7330 40.546 NaN 134760 35 0 9664.6 0.261 + 4613 EYLTKVDKL 9 52 554.8161128691022 1107.6176728050043 2 554.8171997070312 MULTI HCD FTMS 0 0 0 7321 31764.5 0.18330986198704108 -3 0.06958770751953125 9 Unmodified _EYLTKVDKL_ ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 59.368380827593164 0.01846506874148156 2 [YE]{I|L}TKVDK{I|L} 9 0 + 68.399 0 0 6.1754 6.1754 93.845 0 0 0 41.44885804309786 11.39506772603255 11.39506772603255 68.39932061514175 0 1.1861818737241734 1.6989700043360187 0.6694451763165201 0 + + [YE]{I|L}TKVDK{I|L} 6.1754 + + 159 + NaN NaN 110434.9 NaN 4982 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7331 40.549 NaN 65451 35 0 10770 0.261 + 24802 RYPDSHQLF 9 23 581.7857509051602 1161.5569488771202 2 582.2877197265625 MULTI HCD FTMS 0 0 0 7321 7795.6845703125 0.11990442530513908 -8 0.18198776245117188 10 Unmodified _RYPDSHQLF_ ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 7.101721422024254 0.29718071671418667 2 Q{I|L}{M(Oxidation (M))|F} 3 6 26.198 0 0 2.2554 0 0 755.33305556465 0 755.33305556465 0 19.20818753952375 0 0 0 0 0 0 0 + Q{I|L}{M(Oxidation (M))|F} 2.2554 + + 6 NaN NaN 97017.1 NaN 4983 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7332 40.553 NaN 10837 35 0 4305.5 0.261 -1 MLFLLYLHFA 10 9 642.347412109375 NaN 0 642.347412109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Oxidation (M) _M(Oxidation (M))LFLLYLHFA_ ENSG00000137207|ENST00000372422|YIPF3 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93700.9 NaN 4984 2346 7321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7334 40.558 NaN 364470 35 0 133270 0.327 + 10554 IPIHADPRL 9 28 516.3035281529214 1030.5925033726428 2 516.3034057617188 MULTI HCD FTMS 0 0 0 7333 128144.4609375 0.4041220446534347 -4 0.10947799682617188 1 Unmodified _IPIHADPRL_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 19.256988751693697 0.19398022840297344 2 H{[DA]|[EG]}{I|L}[RP] 6 5 18.645 0 0 1.8092 0 0 323.2208735892428 0 323.2208735892428 0 14.041068762089001 0 0 0 1.1989700043360187 0 0 0 H{[DA]|[EG]}{I|L}[RP] 1.8092 - 31 + NaN NaN 140693.1 NaN 4985 2347 7333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7335 40.562 NaN 81863 35 0 15728 0.261 -1 DMHTEVTTL 9 30 531.742144989856 1061.469737046512 2 531.7426147460938 MULTI HCD FTMS 0 0 0 7333 39403.2265625 0.07439871080329749 -23 0.5921249389648438 2 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 20.453626601364224 0.18364154288633264 2 TT{I|L} 3 -1 44.693 0 0 4.2105 0 0 728.2792668771689 0 728.2792668771689 0 30.713337517843655 0 0 0 1 0 0.8494850021680094 0 TT{I|L} 4.2105 + + 14 NaN NaN 94949.3 NaN 4986 2347 7333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7336 40.566 NaN 134540 35 0 24947 0.261 + 26185 SPQAEQPSL 9 39 478.73800324868756 955.4614535641751 2 478.7377014160156 MULTI HCD FTMS 0 0 0 7333 47291.3515625 0.4903879937313091 -2 0.06310272216796875 3 Unmodified _SPQAEQPSL_ ENSG00000091732|ENST00000358303|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;nc|ENSG00000091732|Q86WB0-3|ZC3HC1 15.248480904072842 0.22861284681709862 2 ERQ 3 8 23.188 0 0 2.4268 0 0 227.08900886506336 312.1561628136743 539.2451716787377 0 0 0 0 0 1 0 0 0 ERQ 2.4268 - 48 + NaN NaN 107388.4 NaN 4987 2347 7333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7337 40.569 NaN 42906 35 0 4340.8 0.261 + -1 SGDLCDDDCD 10 22 586.178253552793 1170.3419541723858 2 586.1783447265625 MULTI HCD FTMS 0 0 0 7333 12054.052734375 0.542025716136056 6 -0.16878128051757812 4 2 Carbamidomethyl (C) _SGDLC(Carbamidomethyl (C))DDDC(Carbamidomethyl (C))D_ REV__LRP1B|p.G866C|1|0.26|ENSG00000168702|chr2:140994043-140994043|C/A|missense_variant 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100337.8 NaN 4988 2347 7333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7338 40.572 NaN 37862 35 0 3701.6 0.262 + -1 WHGGHPCL 8 20 482.21791102372276 NaN 0 482.2343444824219 PEAK HCD FTMS 0 0 0 7333 6609.078125 0.9645959703504543 1 -0.023197174072265625 5 Carbamidomethyl (C) _WHGGHPC(Carbamidomethyl (C))L_ REV__ENST00000542541.6_1_19:19050705-19050816:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105227.6 NaN 4989 2347 7333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7339 40.576 NaN 72155 35 0 16132 0.261 -1 TPFNTREPVM 10 33 604.2926451754106 1206.570737417621 2 604.2931518554688 MULTI HCD FTMS 0 0 0 7333 12928.279296875 0.7112637115848897 7 -0.18518829345703125 6 Oxidation (M) _TPFNTREPVM(Oxidation (M))_ ENSG00000242574|ENST00000418107|HLA-DMB 7.101721422024254 0.4377131641736035 2 YYEEQH 6 -1 36.119 0 0 2.9936 0 0 0 354.21585395498363 354.21585395498363 -1.9006039126944785 0 -1.9006039126944785 0 0 0 2 0 0 YYEEQH 2.9936 - 86 NaN NaN 92618.5 NaN 4990 2347 7333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7341 40.581 NaN 213010 35 0 28519 0.327 + 9412 HPTTTEYTF 9 51 548.7510659670654 1095.4875790009307 2 548.7509155273438 MULTI HCD FTMS 0 0 0 7340 92630.6328125 0.6805113649277413 2 -0.0629730224609375 1 Unmodified _HPTTTEYTF_ L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense 34.10243960390752 0.09241788333544565 2 YT{M(Oxidation (M))|F} 3 6 45.005 0 0 4.1082 0 0 666.2981070447507 0 666.2981070447507 0 6.244302919998219 0 0 0 1.5 0 0.3807196863200844 0 + YT{M(Oxidation (M))|F} 4.1082 + + 118 + NaN NaN 123157.3 NaN 4991 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7342 40.585 NaN 308510 35 0 27973 0.261 + 14214 LATKTEVAL 9 49 473.2845165990483 944.5544802648966 2 473.2842712402344 MULTI HCD FTMS 0 0 0 7340 162289.796875 0.10438448636773821 -5 0.1326751708984375 2 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 72.96794272382148 0.008127836904478181 2 {I|L}ATKTEVA{I|L} 9 0 + 73.259 0 0 7.756 7.756 96.759 0 0 0 62.80185028817556 10.642492736872597 10.642492736872597 73.2594251937823 0 1.6989700043360187 1.5228787452803376 1.1989700043360187 0 + + {I|L}ATKTEVA{I|L} 7.756 + + 143 + NaN NaN 144079.6 NaN 4992 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7343 40.589 NaN 233680 35 0 39570 0.261 + 25264 SATVKDYEL 9 53 513.2612929433521 1024.5080329535042 2 513.2610473632812 MULTI HCD FTMS 0 0 0 7340 105987.2265625 0.15769699900664955 -5 0.1326751708984375 3 Unmodified _SATVKDYEL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 49.55428908609986 0.03219431099695407 2 G[WY]E{I|L} 5 6 28.037 0 0 2.7367 0 0 358.1842518537125 0 358.1842518537125 0 4.665266051846935 0 0 0 0.8807196863200843 0 0.4247425010840047 0 G[WY]E{I|L} 2.7367 - 42 NaN NaN 105088.9 NaN 4993 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7344 40.592 NaN 114990 35 0 15809 0.261 + 31413 VYANGIRNI 9 35 510.2853563097824 1018.5561596863648 2 510.2851257324219 MULTI HCD FTMS 0 0 0 7340 65375.109375 0.6463522290888449 3 -0.08614349365234375 4 Unmodified _VYANGIRNI_ ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 46.020951573049366 0.037705236580089195 2 [YV]ANG{I|L} 6 3 51.688 0 0 5.0746 0 0 0 398.21637903385005 398.21637903385005 29.916440611282624 0 0 0 0 0.8494850021680094 2 0 0.3807196863200844 + [YV]ANG{I|L} 5.0746 + + 53 + NaN NaN 95635.7 NaN 4994 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7345 40.596 NaN 65648 35 0 11444 0.261 + 10501 IPEHLTATL 9 35 497.78216046165477 993.5497679901096 2 497.7818908691406 MULTI HCD FTMS 0 0 0 7340 19554.583984375 0.0781856201420718 7 -0.17507171630859375 5 Unmodified _IPEHLTATL_ REV__ENSG00000165219|ENST00000297933|GAPVD1;REV__nc|ENSG00000165219|Q14C86-3|GAPVD1;REV__nc|ENSG00000165219|Q14C86-4|GAPVD1;REV__nc|ENSG00000165219|Q14C86-5|GAPVD1;REV__nc|ENSG00000165219|Q14C86-6|GAPVD1;REV__nc|ENSG00000165219|Q14C86|GAPVD1 14.838274106304384 0.23215694253501695 2 TAT{I|L} 4 -1 27.907 0 0 2.8088 0 0 589.3230876875199 0 589.3230876875199 0 16.938200260161125 0 0 0 0.5 0 0 0 TAT{I|L} 2.8088 + + 10 NaN NaN 89685.9 NaN 4995 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7346 40.599 NaN 77822 35 0 9402.7 0.261 -1 CWLFHPSWHM 10 33 453.8653372998863 NaN 0 453.88134765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _CWLFHPSWHM(Oxidation (M))_ ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant 0.776531954647913 0.3395196853010637 2 W 1 -1 6.9897 0 0 0.77173 0 0 122.379028280004 594.2359497949374 716.6149780749414 0 0 0 0 0 0 0 0 0 W 0.77173 + + 2 + NaN NaN 96315.6 NaN 4996 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7347 40.602 NaN 38401 35 0 8240.5 0.261 + -1 WCVRCPLLT 9 19 574.2911687228678 1146.5677845125356 2 574.291259765625 MULTI HCD FTMS 0 0 0 7340 12587.22265625 0.6831166058718923 30 -0.7935905456542969 7 Carbamidomethyl (C) _WC(Carbamidomethyl (C))VRCPLLT_ REV__ENST00000473311.5_1_3:183906074-183911483:+|nuORF 1.844237919475145 0.33703635659052655 2 {I|L}T 2 -1 20.969 0 0 1.8289 0 0 914.4256006480556 0 914.4256006480556 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}T 1.8289 + + 2 NaN NaN 100759.3 NaN 4997 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7348 40.606 NaN 26576 35 0 5292.5 0.261 -1 GCCSCEPSR 9 23 556.6976002607173 NaN 0 556.6978149414062 PEAK HCD FTMS 0 0 0 7340 7269.1796875 0.5037974452227452 3 -0.08614349365234375 8 3 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))SC(Carbamidomethyl (C))EPSR_ ENST00000469300.6_1_2:128396858-128397856:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87883.4 NaN 4998 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7349 40.609 NaN 21766 35 0 6650 0.261 -1 PRHWIPKMN 9 12 597.8154127553832 NaN 0 597.8135986328125 PEAK HCD FTMS 0 0 0 7340 10700.30078125 0.06960094109047624 44 -1.1108665466308594 9 Oxidation (M) _PRHWIPKM(Oxidation (M))N_ ENSG00000151790|ENST00000536354|TDO2 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90739.2 NaN 4999 2348 7340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7351 40.614 NaN 197060 35 0 29710 0.327 + 34417 YPESESIMM 9 39 559.7225021298727 1117.4304513265454 2 559.72265625 MULTI HCD FTMS 0 0 0 7350 106981.1171875 0.37544117189028514 6 -0.14191055297851562 1 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 61.357469665136826 0.01568246967499496 2 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 68.404 0 0 6.1216 0 0 389.15770156074376 0 389.15770156074376 0 61.414412723804546 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1216 + + 120 NaN NaN 130784.7 NaN 5000 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7352 40.619 NaN 175890 35 0 19431 0.261 + 15304 LPAPEEEEA 9 57 492.72792003900906 NaN 0 492.7445983886719 PEAK HCD FTMS 0 0 0 7350 2696.94140625 0.38194496980100656 1 -0.029811859130859375 2 Unmodified _LPAPEEEEA_ ENSG00000144567|ENST00000430297|RETREG2 9.347437153973935 0.2499504662953367 2 NQ[TP]PA 6 7 11.106 0 0 1.1293 0 0 165.01252845516814 207.11403833560783 372.126566790776 0 0 0 0 0 0 0 0.5866968715561641 0 NQ[TP]PA 1.1293 - 68 + NaN NaN 134106.3 NaN 5001 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7353 40.622 NaN 347430 35 0 116240 0.261 + 14731 LHPGEIPR 8 43 459.7615263280008 917.5084997228016 2 459.7612609863281 MULTI HCD FTMS 0 0 0 7350 117447.0703125 0.8996286641231926 -2 0.05635833740234375 3 Unmodified _LHPGEIPR_ ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15 16.942295170755138 0.46913822049235215 2 [{I|L}P]HW{I|L}[RP] 7 3 [{I|L}P] + + 22.945 4.6591 2.2172 2.5008 2.5008 59.903 0 0 0 0 18.96591250700361 0 0 0 0.8252574989159953 0 0 0 [{I|L}P]HW{I|L}[RP] 2.5008 - 28 + NaN NaN 142566.2 NaN 5002 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7354 40.625 NaN 317960 35 0 72688 0.261 + 35407 YYEEQHPEL 9 43 604.2670384843465 1206.5195240354929 2 604.2672729492188 MULTI HCD FTMS 0 0 0 7350 111556.5078125 0.052080633116261654 -8 0.21549606323242188 4 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 71.70789743142352 0.008535567138151097 2 YYEEQH 6 3 88.493 0 0 7.3345 0 0 0 354.16682529580817 354.16682529580817 65.38364391835536 0 0 0 0 2.079689690656103 2 0.805462187404089 0 + YYEEQH 7.3345 + + 223 + NaN NaN 147597.8 NaN 5003 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7355 40.629 NaN 63789 35 0 16011 0.261 + 14242 LCFACGCWFGM 11 20 619.2358810296053 1236.4572091260104 2 619.236083984375 MULTI HCD FTMS 0 0 0 7350 52361.35546875 0.51640032964542 10 -0.24103164672851562 5 Unmodified _LCFACGCWFGM_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|84 3.5964929083625545 0.40314767035630406 2 MP 2 -1 20.969 0 0 1.6959 0 0 0 1005.3342989557249 1005.3342989557249 16.989700043360187 0 0 0 0 0 0 0 0 MP 1.6959 - 3 + NaN NaN 107115.9 NaN 5004 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7356 40.632 NaN 144800 35 0 29786 0.261 + -1 PWCAQLQLM 9 26 581.7728049537426 NaN 0 581.7850952148438 PEAK HCD FTMS 0 0 0 7350 3514.815185546875 0.571432319482036 -1 0.033161163330078125 6 Carbamidomethyl (C),Oxidation (M) _PWC(Carbamidomethyl (C))AQLQLM(Oxidation (M))_ REV__ENST00000428206.5_1_7:72722543-72722777:-|nuORF 3.944395688203298 0.27613285122220627 2 {I|L}Q 2 -1 10.969 0 0 0.94437 0 0 165.05390564009684 752.3133368289054 917.3672424690023 0 0 0 0 0 0 0 0 0 {I|L}Q 0.94437 + + 6 + NaN NaN 113784 NaN 5005 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7357 40.635 NaN 275350 35 0 56474 0.261 -1 0 36 638.3203842906942 1274.6262156481882 2 638.3199462890625 MULTI HCD FTMS 0 0 0 7350 76134.75 0.15589802656837903 -6 0.16583633422851562 7 NaN NaN 2 E[PA]NQE{I|L} 7 -1 65.534 0 0 5.1414 0 0 475.25349623847814 0 475.25349623847814 0 48.08622918369565 0 0 0 2.2302046884880937 0 0.4247425010840047 0.4247425010840047 E[PA]NQE{I|L} 5.1414 - 330 NaN NaN 130969.5 NaN 5006 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7358 40.639 NaN 49870 35 0 6426 0.264 + 12210 KKSRKKKYKK 10 37 441.29757465645827 NaN 0 441.29742431640625 PEAK HCD FTMS 0 0 0 7350 20041.943359375 0.5146348433337686 554 -13.924575805664062 8 Unmodified _KKSRKKKYKK_ REV__ENSG00000101882|ENST00000371410|NKAP;REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF 0.12286491777506015 0.3400791336886836 2 Y 1 -1 3.4949 0 0 0.39688 0 0 383.8145268990509 330.6701754205688 714.4847023196197 0 0 0 0 0 0 0 0 0 Y 0.39688 + + 1 + NaN NaN 98564.1 NaN 5007 2349 7350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7360 40.644 NaN 330760 35 0 33917 0.327 + 22123 QIIEKDAAL 9 65 500.78758333117725 999.5606137291545 2 500.787353515625 MULTI HCD FTMS 0 0 0 7359 208296.140625 0.8627795735067036 -1 0.029811859130859375 1 Unmodified _QIIEKDAAL_ ENSG00000155868|ENST00000286317|MED7 53.832793166522166 0.026208976789938845 2 [Q{I|L}][SG]E{I|L}{[VA]|[{I|L}G]}A{I|L} 10 4 + 41.52 0 0 4.1538 4.1538 86.63 0 0 0 5.4137052840692235 21.581531501239294 5.4137052840692235 9.63061663333185 0 0.8807196863200843 1.3979400086720375 0.7302046884880937 0.9247425010840047 [Q{I|L}][SG]E{I|L}{[VA]|[{I|L}G]}A{I|L};[Q{I|L}][SG]E{I|L}[Q{I|L}]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KE{I|L}{[VA]|[{I|L}G]}A{I|L};{[DA]|[EG]}AKE{I|L}{[VA]|[{I|L}G]}A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KE{I|L}[Q{I|L}]{I|L};{[DA]|[EG]}AKE{I|L}[Q{I|L}]{I|L} 4.1538;3.1903;3.1763;3.1305;2.2182;2.167 -;-;-;-;-;- 213 NaN NaN 136446.8 NaN 5008 2350 7359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7361 40.648 NaN 221200 35 0 14792 0.261 + 13082 KYLEETNSL 9 54 548.7798416165555 1095.5451302999109 2 548.7794799804688 MULTI HCD FTMS 0 0 0 7359 84739.8125 0.8099452444644101 -2 0.0629730224609375 2 Unmodified _KYLEETNSL_ ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3 104.48436234954404 0.0038428467764084714 2 [YK]{I|L}EETNS{I|L} 9 0 + 75.57 0 0 6.8979 6.8979 90.082 0 0 0 5.479465618955501 5.479465618955501 5.479465618955501 9.208187539523749 0 2.4291746928241125 0 0.6421590589602533 0.3252574989159953 + + [YK]{I|L}EETNS{I|L};[YK]{I|L}EETGGS{I|L};[YK]HHPTNS{I|L};[YK]HHPTGGS{I|L};{[TV]|[{I|L}S]}NT[{M(Oxidation (M))|F}E][VS]S{I|L};{[TV]|[{I|L}S]}NTEE[YK]{I|L} 6.8979;6.0574;3.8898;2.7018;2.5035;0.35877 +;-;-;-;-;- + 294 NaN NaN 134421.1 NaN 5009 2350 7359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7362 40.652 NaN 55812 35 0 9499.4 0.262 + 7975 GELDQRAL 8 30 451.2405066292066 900.4664603252132 2 451.240234375 MULTI HCD FTMS 0 0 0 7359 32786.36328125 0.5558955108569821 3 -0.082611083984375 3 Unmodified _GELDQRAL_ ENSG00000112159|ENST00000369393|MDN1 6.723162845929126 0.5320176132289695 2 A{I|L} 2 6 25.969 0 0 2.884 0 0 698.335506220897 0 698.335506220897 0 25.969100130080562 0 0 0 0.5 0 0 0 + A{I|L} 2.884 + + 2 NaN NaN 92088.4 NaN 5010 2350 7359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7363 40.655 NaN 51071 35 0 6243.7 0.261 -1 0 37 624.1840132068189 3739.060420441313 6 624.3521728515625 MULTI HCD FTMS 0 0 0 7359 22605.212890625 0.7206633340850965 -16 0.43032073974609375 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92141.1 NaN 5011 2350 7359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7364 40.659 NaN 24814 35 0 4147.7 0.261 -1 RHMDNESAKV 10 21 601.7826196093506 1201.5506862855011 2 601.7825317382812 MULTI HCD FTMS 0 0 0 7359 6058.451171875 0.01968508179388394 16 -0.38634490966796875 5 Oxidation (M) _RHM(Oxidation (M))DNESAKV_ ENST00000406540.5_1_2:27885036-27886281:-|nuORF;ENST00000464789.2_1_2:27885036-27886449:-|nuORF 1.4819007175156935 0.4674597685733628 2 [QA]T 3 -1 10.458 0 0 0.87034 0 0 0 898.3956392877561 898.3956392877561 7.3586311141647816 0 0 0 0 0 0 0 0 [QA]T 0.87034 - 2 + NaN NaN 89513 NaN 5012 2350 7359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7365 40.662 NaN 119490 35 0 15444 0.262 + -1 PPCQMEMT 8 45 505.1937538305143 1008.3729547278286 2 505.1936950683594 MULTI HCD FTMS 0 0 0 7359 12666.4384765625 0.9637157886743621 -1 0.029811859130859375 6 Carbamidomethyl (C),Oxidation (M) _PPC(Carbamidomethyl (C))QM(Oxidation (M))EMT_ REV__ENSG00000172935|ENST00000309099|MRGPRF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116665.2 NaN 5013 2350 7359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7367 40.667 NaN 109640 35 0 15329 0.327 + 11917 KFIDTTSKF 9 42 543.7950986694144 1085.5756444056287 2 543.795166015625 MULTI HCD FTMS 0 0 0 7366 73639.734375 0.008826233133132293 50 -1.2483749389648438 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 40.72490554402381 0.06201705472789164 2 K{M(Oxidation (M))|F}{I|L}D 4 5 43.928 0 0 4.0465 0 0 0 579.2782686822874 579.2782686822874 1.1805408249163918 0 0 0 0 1 0 0.5 0 + K{M(Oxidation (M))|F}{I|L}D 4.0465 + + 30 + NaN NaN 112578.5 NaN 5014 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7368 40.672 NaN 155040 35 0 38578 0.261 -1 AYLSKAMEI 9 37 521.2679795825817 1040.5214062319633 2 521.2677001953125 MULTI HCD FTMS 0 0 0 7366 29137.90625 0.22963432216859553 5 -0.10869216918945312 2 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ ENSG00000124784|ENST00000379834|RIOK1 21.536976647645854 0.1742816388551942 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 37.76 0 0 3.6289 0 0 0 690.314047039465 690.314047039465 19.800821617046935 0 0 0 0 0.7302046884880937 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3.6289 + + 29 + NaN NaN 105535.1 NaN 5015 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7369 40.675 NaN 113170 35 0 23973 0.262 + 19149 NGLEQASL 8 42 416.214281228684 830.414009524168 2 416.2140808105469 MULTI HCD FTMS 0 0 0 7366 41533.87890625 0.4837771118933115 4 -0.08892822265625 3 Unmodified _NGLEQASL_ REV__ENSG00000019995|ENST00000359653|ZRANB1 13.90604991867851 0.4914777452512057 2 {I|L} 1 -1 19.604 0 0 2.3608 0 0 699.3195709028774 0 699.3195709028774 0 19.604093769761874 0 0 0 0.5 0 0 0 {I|L} 2.3608 + + 4 + NaN NaN 120292.8 NaN 5016 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7370 40.678 NaN 85281 35 0 7986.7 0.261 + 24871 RYQEMIQKL 9 50 403.55352110986826 1207.6387339298049 3 403.5534362792969 MULTI HCD FTMS 0 0 0 7366 12309.833984375 0.4041516984652375 1 -0.033061981201171875 4 Unmodified _RYQEMIQKL_ ENSG00000151466|ENST00000281142|SCLT1;ENST00000502495.1_1_4:129805634-129873545:-|nuORF 12.174745833636585 0.2551692358394414 2 ME 2 8 12.078 0 0 1.0002 0 0 500.3346700643736 444.19892297916255 944.5335930435361 0 0 0 0 0 0.5 0 0 0 ME 1.0002 - 22 + NaN NaN 120972.2 NaN 5017 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7371 40.682 NaN 75485 35 0 8781.1 0.261 + 11946 KFIWTNHKF 9 39 407.55743365625244 1219.6504715689573 3 407.5572814941406 MULTI HCD FTMS 0 0 0 7366 40200.11328125 0.055815772067842696 37 -0.9266166687011719 5 Unmodified _KFIWTNHKF_ ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF 6.2057823575117 0.30397260197431997 2 K{M(Oxidation (M))|F} 2 7 20.969 0 0 1.7193 0 0 0 941.4656453470357 941.4656453470357 6.9897000433601875 0 0 0 0 0 0 0 0 + K{M(Oxidation (M))|F} 1.7193 + + 9 + NaN NaN 103520 NaN 5018 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7372 40.685 NaN 39150 35 0 3980.1 0.261 + -1 ELDCGGAEL 9 29 482.2081823247776 962.4018117163553 2 482.2076110839844 MULTI HCD FTMS 0 0 0 7366 11000.4794921875 0.6870650335676779 -1 0.02317047119140625 6 Carbamidomethyl (C) _ELDC(Carbamidomethyl (C))GGAEL_ REV__ENSG00000036054|ENST00000394144|TBC1D23;REV__ENST00000475134.1_1_3:99998514-100014027:+|nuORF;REV__ENST00000484231.1_1_3:99998514-100002656:+|nuORF;REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF;REV__nc|ENSG00000036054|Q9NUY8-2|TBC1D23 3.944395688203298 0.32111559684428237 2 E{I|L} 2 -1 19.464 0 0 2.0224 0 0 702.2672596662125 0 702.2672596662125 0 15.484550065040281 0 0 0 0 0 0 0 E{I|L} 2.0224 + + 4 NaN NaN 103565.3 NaN 5019 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7373 40.688 NaN 41818 35 0 5580.6 0.261 + 18643 MYDDIAHS 8 29 476.1984982124427 NaN 0 476.1982116699219 PEAK HCD FTMS 0 0 0 7366 8823.75 0.5328832247871096 20 -0.4986991882324219 7 Unmodified _MYDDIAHS_ LGMN|p.Y76H|1|0.16|ENSG00000100600|chr14:92718757-92718757|A/G|missense_variant 2.302733041254933 0.38822285293237185 2 {I|L} 1 7 3.9794 0 0 0.41872 0 0 493.13941478250416 341.1358736627563 834.2752884452605 0 0 0 0 0 0 0 0 0 + {I|L} 0.41872 + + 2 + NaN NaN 106012.5 NaN 5020 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7374 40.692 NaN 34480 35 0 5847.6 0.261 -1 TECLILVMM 9 24 542.7581753954488 NaN 0 542.7576293945312 PEAK HCD FTMS 0 0 0 7366 13873.5263671875 0.9462787240052943 10 -0.24431610107421875 8 2 Oxidation (M) _TECLILVM(Oxidation (M))M(Oxidation (M))_ ENSG00000221836|ENST00000641693|OR2A5;ENSG00000221858|ENST00000641592|OR2A12 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89800.3 NaN 5021 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7375 40.695 NaN 57495 35 0 17618 0.261 -1 HCFYPPEMV 9 21 611.2566296152675 1220.4987062973348 2 612.5821533203125 MULTI HCD FTMS 0 0 0 7366 4030.76171875 0.1729227629534127 -7 0.19898223876953125 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))HC(Carbamidomethyl (C))FYPPEMV_ ENST00000255198.2_2_5:76373702-76374514:-|nuORF 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91699.2 NaN 5022 2351 7366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7377 40.7 NaN 773550 35 0 283170 0.327 + 10555 IPIHADPRL 9 51 516.3035281529214 1030.5925033726428 2 516.3034057617188 MULTI HCD FTMS 0 0 0 7376 275989.59375 0.8703730002322856 1 -0.026378631591796875 1 Unmodified _IPIHADPRL_ ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C 32.78568957990786 0.09846250359632436 2 {I|L}P{I|L}HAD{I|L}[RP] 9 2 + 52.923 0 0 5.1352 5.1352 91.805 0 0 0 44.851453248366795 5.6424927368725974 5.6424927368725974 52.92342188037523 0 1.4049471895720984 0 0 0 {I|L}P{I|L}HAD{I|L}[RP] 5.1352 - 82 + NaN NaN 203162.5 NaN 5023 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7378 40.705 NaN 293990 35 0 108930 0.261 + 8497 HADQEYVL 8 35 487.7327431263528 973.4509333195056 2 487.7326965332031 MULTI HCD FTMS 0 0 0 7376 159613.234375 0.8475132041687515 1 -0.026378631591796875 2 Unmodified _HADQEYVL_ ENSG00000112249|ENST00000369162|ASCC3 6.723162845929126 0.5320176132289695 2 YV{I|L} 3 5 31.198 0 0 3.2049 0 0 580.2245350568375 0 580.2245350568375 0 31.197887582883936 0 0 0 0.5 0 0 0 + YV{I|L} 3.2049 + + 8 NaN NaN 136601.2 NaN 5024 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7379 40.708 NaN 184390 35 0 14949 0.261 + 4614 EYLTKVDKL 9 59 554.8161128691022 1107.6176728050043 2 554.8161010742188 MULTI HCD FTMS 0 0 0 7376 129029.9453125 0.7446193539148998 3 -0.055866241455078125 3 Unmodified _EYLTKVDKL_ ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 80.6760300276096 0.005633624786464751 2 EY{I|L}TKVDK{I|L} 9 0 + 83.911 0 0 7.5758 7.5758 95.128 0 0 0 56.11046901591578 9.889917747712644 9.889917747712644 32.23197507588033 0 1.1307196863200843 2 1.4802046884880937 0 + + EY{I|L}TKVDK{I|L};{I|L}[YE]TKVDK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}VKT[YE]{I|L};[KT][Q{I|L}]T{I|L}[YE]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[KS]{I|L}[YE]{I|L};[KT][Q{I|L}]{I|L}T[YE]{I|L} 7.5758;4.6658;1.7482;1.4102;1.3889;0.97948 +;-;-;-;-;- + 318 + NaN NaN 105968.9 NaN 5025 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7380 40.711 NaN 254820 35 0 28855 0.261 + 814 AVIEAEHTL 9 60 491.7634829258264 981.5124129184528 2 491.7629089355469 MULTI HCD FTMS 0 0 0 7376 108177.953125 1 0 0 4 Unmodified _AVIEAEHTL_ ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77561342-77561690:+|nuORF;ENST00000485081.5_1_1:182847108-182856566:+|nuORF 85.27202061508552 0.004649858145912257 2 {[VA]|[{I|L}G]}{I|L}EAEHT{I|L} 9 0 + 74.575 0 0 7.598 7.598 95.497 0 0 0 6.823033561788989 48.99166239860314 6.823033561788989 37.78151250383643 0 2.774227503252014 1.6989700043360187 0 0 + + {[VA]|[{I|L}G]}{I|L}EAEHT{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}GAEHT{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}QEHT{I|L};{[QN]|[E{I|L}]|[KN]}[TA][TP]HT{I|L};{[QN]|[E{I|L}]|[KN]}[TA]HE{I|L}G{I|L};{[QN]|[E{I|L}]|[KN]}[TA]H[TP]T{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[TP]E[PA]{I|L} 7.598;3.7487;2.8859;1.3153;1.2289;0.49919;0.23859 +;-;-;-;-;-;- + 188 NaN NaN 124964.9 NaN 5026 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7381 40.715 NaN 68222 35 0 6682.5 0.261 + 4329 EVTPVTGASLR 11 36 565.3143627508994 1128.6141725685986 2 565.3139038085938 MULTI HCD FTMS 0 0 0 7376 33003.53125 1 0 0 5 Unmodified _EVTPVTGASLR_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 15.738622578938676 0.31995127722034494 2 {NN|[MP]|[D{I|L}]|[EV]}T[VP]TQ 7 5 39.793 0 0 3.5258 0 0 0 371.2041109674438 371.2041109674438 30.32924130362474 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}T[VP]TQ 3.5258 - 36 + NaN NaN 109062.2 NaN 5027 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7382 40.718 NaN 55134 35 0 5246.6 0.261 + -1 WDPACQPF 8 30 510.7173060903839 1019.4200592475678 2 510.7173156738281 MULTI HCD FTMS 0 0 0 7376 16337.7666015625 0.3992509822889679 5 -0.10208892822265625 6 Carbamidomethyl (C) _WDPAC(Carbamidomethyl (C))QPF_ REV__ENST00000337248.8_1_1:24706183-24710435:-|nuORF 12.531546534597751 0.5015908124873912 2 QP{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.5508 0 0 629.2297038782303 0 629.2297038782303 0 36.197887582883936 0 0 0 1 0 0 0 QP{M(Oxidation (M))|F} 3.5508 + + 15 + NaN NaN 83030.3 NaN 5028 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7383 40.721 NaN 48952 35 0 7559.7 0.261 + 9296 HPPPQPLTHT 10 30 562.7957071357245 1123.5768613382488 2 562.7958984375 MULTI HCD FTMS 0 0 0 7376 12523.5029296875 0.011216736322958366 86 -2.1799278259277344 7 Unmodified _HPPPQPLTHT_ ENST00000302625.5_1_2:219825213-219826146:+|nuORF 5.731851221503515 0.44496410492002586 2 HPV 3 8 31.198 0 0 2.7767 0 0 0 787.3788468618997 787.3788468618997 30.088643834802156 0 0 0 0 0.5 0 0 0 HPV 2.7767 - 7 + NaN NaN 98012.6 NaN 5029 2352 7376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7385 40.727 NaN 1751300 35 0 160870 0.327 + 14215 LATKTEVAL 9 87 473.2845165990483 944.5544802648966 2 473.284423828125 MULTI HCD FTMS 0 0 0 7384 1554731 1 0 0 1 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 128.93241758739586 0.0006697181619526092 2 {I|L}ATKTEVA{I|L} 9 0 + 112.78 0 0 11.94 11.94 96.295 0 0 0 82.82276393033209 14.09256854528806 14.09256854528806 12.725176471194374 0 2.916386562212267 1.5228787452803376 1.5356668758921828 0 + + {I|L}ATKTEVA{I|L};[{I|L}A]TKTEVA{I|L};[{I|L}A]TKTEAV{I|L};[{I|L}A]TKTD{I|L}A{I|L};[{I|L}A]TKTEG{I|L}{I|L};[{I|L}A]TKTEA{I|L}V;[KT]A{I|L}TEVA{I|L};[{I|L}A]TKDT{I|L}A{I|L};[{I|L}A]TKTDA{I|L}{I|L};[TA]{I|L}KTEVA{I|L} 11.94;10.593;9.6091;9.3565;9.1553;8.4253;8.2392;8.1427;7.919;7.7909 +;+;-;-;-;-;-;-;-;- + 3210 + NaN NaN 369079.1 NaN 5030 2353 7384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7386 40.731 NaN 908810 35 0 149470 0.261 + 25265 SATVKDYEL 9 75 513.2612929433521 1024.5080329535042 2 513.2611694335938 MULTI HCD FTMS 0 0 0 7384 672094.125 1 0 0 2 Unmodified _SATVKDYEL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 103.82355648334675 0.003950725192926219 2 {[SA]|[TG]}TVKDYE{I|L} 9 0 + 87.177 0 0 8.5092 8.5092 97.544 0 0 0 7.147642715192504 48.66196879911484 7.147642715192504 57.0609971201948 0 2.5356668758921828 0 1.6237125054200234 0 + + {[SA]|[TG]}TVKDYE{I|L};[YE]DK{I|L}SAS{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}SAS{I|L};[YE]DK[KT]E{I|L};[YE]D{I|L}KSAS{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK[KT]E{I|L};{[YD]|[{M(Oxidation (M))|F}M]}E{I|L}KSAS{I|L};{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}KSAS{I|L};[YE]DK{I|L}S{I|L}AS;{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}S{I|L}AS 8.5092;2.9396;2.8742;2.5538;2.5512;2.4884;2.4858;2.4566;2.3557;2.2904 +;-;-;-;-;-;-;-;-;- + 611 NaN NaN 236452.2 NaN 5031 2353 7384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7387 40.735 NaN 110580 35 0 18918 0.261 + 15196 LNDSGGPPSL 10 39 478.73800324868756 955.4614535641751 2 478.73748779296875 MULTI HCD FTMS 0 0 0 7384 63022.4375 0.6535115970377235 4 -0.07571029663085938 3 Unmodified _LNDSGGPPSL_ REV__ENSG00000150627|ENST00000508596|WDR17;REV__nc|ENSG00000150627|Q8IZU2|WDR17 8.155526934196011 0.43213520406898465 2 Q[PS]{I|L} 4 -1 23.188 0 0 2.4268 0 0 512.2231944470084 0 512.2231944470084 0 23.187587626244124 0 0 0 1 0 0 0 Q[PS]{I|L} 2.4268 - 15 NaN NaN 103037.6 NaN 5032 2353 7384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7388 40.738 NaN 100160 35 0 19738 0.261 -1 DMHTEVTTL 9 42 531.742144989856 1061.469737046512 2 531.7421875 MULTI HCD FTMS 0 0 0 7384 45180.90625 0.08530776464696135 -17 0.4532508850097656 4 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 14.838274106304384 0.23215694253501695 2 TT{I|L} 3 -1 40.445 0 0 3.8103 0 0 728.2801336679892 0 728.2801336679892 0 34.9607625286837 0 0 0 1 0 0.4247425010840047 0 TT{I|L} 3.8103 + + 7 NaN NaN 99028.2 NaN 5033 2353 7384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7390 40.743 NaN 80013 35 0 11134 0.327 -1 AYVHMVTHF 9 41 560.7657330135318 1119.5169130938634 2 560.765869140625 MULTI HCD FTMS 0 0 0 7389 37370.0859375 0.033187506036146945 146 -3.8639678955078125 1 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 15.847184025352803 0.2234401846867398 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHY 5 -1 38.812 0 0 3.4669 0 0 0 483.2006929986938 483.2006929986938 31.822581265925436 0 0 0 0 0.5 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHY 3.4669 - 61 + NaN NaN 116661.2 NaN 5034 2354 7389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7391 40.747 NaN 73071 35 0 8862.7 0.261 + 33063 YDGTSDWGELP 11 32 620.2623976269292 1238.5102423206583 2 620.261962890625 MULTI HCD FTMS 0 0 0 7389 42468.359375 0.5913546977231546 -3 0.07584762573242188 2 Unmodified _YDGTSDWGELP_ REV__ENSG00000167721|ENST00000301364|TSR1 5.296884461304476 0.39569033063702824 2 E 1 -1 15.797 0 0 1.2755 0 0 358.1149678017386 748.3249605768186 1106.4399283785572 0 0 0 0 0 0.5 0 0.3807196863200844 0 E 1.2755 + + 6 + NaN NaN 107749.9 NaN 5035 2354 7389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7392 40.751 NaN 24548 35 0 4486 0.261 + -1 CCFDCRGCDM 10 15 613.181544719061 NaN 0 613.1813354492188 PEAK HCD FTMS 0 0 0 7389 12027.4423828125 0.7963135176214603 -2 0.04278564453125 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))CFDCRGCDM(Oxidation (M))_ REV__ENSG00000141644|ENST00000269468|MBD1;REV__MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant;REV__nc|ENSG00000141644|Q9UIS9-10|MBD1;REV__nc|ENSG00000141644|Q9UIS9-12|MBD1;REV__nc|ENSG00000141644|Q9UIS9-2|MBD1;REV__nc|ENSG00000141644|Q9UIS9-5|MBD1;REV__nc|ENSG00000141644|Q9UIS9-6|MBD1;REV__nc|ENSG00000141644|Q9UIS9-8|MBD1;REV__nc|ENSG00000141644|Q9UIS9-9|MBD1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99921.8 NaN 5036 2354 7389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7394 40.756 NaN 2793100 35 0 624190 0.327 + 35408 YYEEQHPEL 9 96 604.2670384843465 1206.5195240354929 2 604.2672729492188 MULTI HCD FTMS 0 0 0 7393 1738698.875 0.8117190111466128 -2 0.02948760986328125 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 216.56568483796636 8.600418336565962E-24 2 YYEEQHPE{I|L} 9 0 + 108.83 0 0 9.0201 9.0201 96.046 0 0 0 10.389763779838503 31.296947037908666 10.389763779838503 18.010299956639813 0 2.4247425010840047 2 1.3893016935150575 0.9876954943324545 + + YYEEQHPE{I|L};[YE]YEQHPE{I|L};YYEE[AG]HPE{I|L};[YE]EYQHPE{I|L};EEYYQHPE{I|L};[YE]YE[AG]HPE{I|L};[YE]EY[AG]HPE{I|L};EEYY[AG]HPE{I|L};EEQYYHPE{I|L};[EP]H{I|L}EQEYY 9.0201;7.5274;7.4383;7.0903;6.6704;5.9455;5.5085;5.0886;4.8229;4.6436 +;-;-;-;-;-;-;-;-;- + 5881 NaN NaN 519464.1 NaN 5037 2355 7393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7395 40.76 NaN 235340 35 0 49236 0.261 + 24803 RYPDSHQLF 9 44 581.7857509051602 1161.5569488771202 2 581.7857055664062 MULTI HCD FTMS 0 0 0 7393 77974.8671875 0.887486716530971 -2 0.02948760986328125 2 Unmodified _RYPDSHQLF_ ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 27.223235318498237 0.1251536255799991 2 [YR][DP]SHQ{I|L}{M(Oxidation (M))|F} 9 0 + 48.606 0 0 4.1845 4.1845 85.803 0 0 0 0.9151498112134959 43.12137499549429 0.9151498112134959 9.208187539523749 0 1.274227503252014 0 0 0 + + [YR][DP]SHQ{I|L}{M(Oxidation (M))|F};[YR][DP]SH[AG]{I|L}{M(Oxidation (M))|F} 4.1845;3.3918 +;- + 62 NaN NaN 119848.3 NaN 5038 2355 7393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7396 40.764 NaN 151700 35 0 18887 0.262 + 27499 TAAAENIRL 9 52 479.7695306261124 957.5245083190248 2 479.7686767578125 MULTI HCD FTMS 0 0 0 7393 70221.9140625 0.8404455843951958 -2 0.02948760986328125 3 Unmodified _TAAAENIRL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229|ITGA6 59.368380827593164 0.01846506874148156 2 [TA]AAE{[QV]|[N{I|L}]|[RA]|[KV]}R{I|L} 9 0 + 75.753 0 0 7.9114 7.9114 91.91 0 0 0 13.596981436199016 12.196596782814808 12.196596782814808 9.208187539523749 0 2.3807196863200843 1.5228787452803376 0.9604093769761876 0 + + [TA]AAE{[QV]|[N{I|L}]|[RA]|[KV]}R{I|L};[TA]AAE{[QV]|[N{I|L}]|[RA]|[KV]}[VG]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}AE{[QV]|[N{I|L}]|[RA]|[KV]}R{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}AE{[QV]|[N{I|L}]|[RA]|[KV]}[VG]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}AA[PG];[KG]EE{[QV]|[N{I|L}]|[RA]|[KV]}R{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}A{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}A[PG];[KG]N[KS]{[TV]|[{I|L}S]}A[PG];[KG]N[KS]{[TV]|[{I|L}S]}[QP] 7.9114;6.9497;5.1222;4.1549;2.8963;2.8656;2.4987;1.5555;0.35116 +;-;-;-;-;-;-;-;- + 190 NaN NaN 106218.8 NaN 5039 2355 7393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7397 40.767 NaN 80853 35 0 10815 0.261 -1 RYQQWMERF 9 33 453.88003143201183 1358.6182648962356 3 453.8802795410156 MULTI HCD FTMS 0 0 0 7393 17439.01171875 0.029793183558150933 -31 0.7903938293457031 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 12.174745833636585 0.2551692358394414 2 W 1 -1 14.732 0 0 1.0843 0 0 597.2574139215887 572.2583027786264 1169.5157167002153 0 0 0 0 0 0.9247425010840047 0 0 0 W 1.0843 + + 20 + NaN NaN 90399.1 NaN 5040 2355 7393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7398 40.771 NaN 27850 35 0 7721 0.261 -1 RYLEKPMEI 9 19 597.8154127553832 NaN 0 597.812744140625 PEAK HCD FTMS 0 0 0 7393 11032.4130859375 0.0717611914821738 51 -1.2877044677734375 5 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.27934607848455584 2 E 1 -1 9.732 0 0 0.81534 0 0 504.22773605588515 557.3400972955686 1061.5678333514538 0 0 0 0 0 0.4247425010840047 0 0 0 E 0.81534 + + 2 + NaN NaN 85704.8 NaN 5041 2355 7393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7400 40.776 NaN 835560 35 0 162500 0.327 -1 0 64 638.3203842906942 1274.6262156481882 2 638.3201904296875 MULTI HCD FTMS 0 0 0 7399 399374.21875 0.8177823210217819 1 -0.026458740234375 1 NaN NaN 2 Q{I|L}E[PA]NQE{I|L} 9 -1 83.126 0 0 6.5216 0 0 234.11187941718907 0 234.11187941718907 0 55.379552258837705 0 0 0 3.079689690656103 0 0.3807196863200844 0.805462187404089 Q{I|L}E[PA]NQE{I|L} 6.5216 - 2345 NaN NaN 215177 NaN 5042 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7401 40.78 NaN 119440 35 0 11018 0.263 + 22124 QIIEKDAAL 9 49 500.78758333117725 999.5606137291545 2 500.7872619628906 MULTI HCD FTMS 0 0 0 7399 97216.84375 0.4026800820054457 5 -0.13562393188476562 2 Unmodified _QIIEKDAAL_ ENSG00000155868|ENST00000286317|MED7 17.11289562659939 0.2125047172822487 2 QK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L} 5 6 22.703 0 0 2.2713 0 0 337.2002125470719 0 337.2002125470719 0 8.098943791441968 0 0 0 0 0 0 0.5 QK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L} 2.2713 - 60 NaN NaN 99063.7 NaN 5043 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7402 40.784 NaN 195600 35 0 31647 0.261 + 3742 ENDELEWTW 9 43 611.2566296152675 1220.4987062973348 2 611.2564697265625 MULTI HCD FTMS 0 0 0 7399 70633.4453125 0.8622840470392191 1 -0.026458740234375 3 Unmodified _ENDELEWTW_ REV__ZNF646|p.R697W|1|0.14|ENSG00000167395|chr16:31078413-31078413|C/T|missense_variant 1.844237919475145 0.33703635659052655 2 EEQH 4 -1 35.424 0 0 2.9025 0 0 340.10608146680585 354.16660486392817 694.272686330734 0 0 0 0 0 1.305462187404089 0 0.7059771852360797 0.28872548999643577 EEQH 2.9025 - 41 + NaN NaN 132697.9 NaN 5044 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7403 40.787 NaN 60315 35 0 6904 0.261 -1 YPESESIMM 9 35 559.7225021298727 1117.4304513265454 2 559.7227172851562 MULTI HCD FTMS 0 0 0 7399 16065.8388671875 0.05638170109147203 13 -0.3305015563964844 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.11819662193267319 2 {I|L}E[RH]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 31.872 0 0 2.8523 0 0 70.00315748064538 0 70.00315748064538 0 31.871987629411294 0 0 0 1 0 0.4247425010840047 0 {I|L}E[RH]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8523 - 37 + NaN NaN 102152.2 NaN 5045 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7404 40.79 NaN 56398 35 0 3405.6 0.263 + 16413 LSKILRAKKHK 11 38 441.29757465645827 NaN 0 441.2972412109375 PEAK HCD FTMS 0 0 0 7399 17419.888671875 0.4473060080448031 561 -14.052257537841797 5 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 Y 1 11 3.9794 0 0 0.45191 0 0 164.26524101037904 550.2254732721311 714.4907142825102 0 0 0 0 0 0 0 0 0 Y 0.45191 - 1 + NaN NaN 94176.9 NaN 5046 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7405 40.794 NaN 48519 35 0 8254.9 0.261 + 8169 GPQEEGGGCWS 11 30 553.7129274920312 1105.4113020508623 2 553.7122192382812 MULTI HCD FTMS 0 0 0 7399 8616.515625 0.5043986834762365 -2 0.03284454345703125 6 Unmodified _GPQEEGGGCWS_ ENST00000524482.5_1_11:64893377-64893431:+|nuORF 1.1933415558491238 0.4136870758253112 2 {[CP]|[EA]}D 3 9 7.4473 0 0 0.67371 0 0 0 787.2804699287668 787.2804699287668 4.683065105678034 0 0 0 0 0 0 0 0 {[CP]|[EA]}D 0.67371 - 2 + NaN NaN 86853.2 NaN 5047 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7406 40.797 NaN 15622 35 0 4263.1 0.261 -1 MDPLNLSWY 9 15 590.7721410266435 NaN 0 590.2861328125 PEAK HCD FTMS 0 0 0 7399 6874.572265625 0.5543072629714592 2 -0.049560546875 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MDPLNLSWY_ ENSG00000149295|ENST00000362072|DRD2;ENST00000540600.5_1_11:113285027-113346393:-|nuORF;nc|ENSG00000149295|P14416-2|DRD2;nc|ENSG00000149295|P14416-3|DRD2 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86209.2 NaN 5048 2356 7399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7408 40.802 NaN 86708 35 0 11740 0.327 + 11918 KFIDTTSKF 9 32 543.7950986694144 1085.5756444056287 2 543.7950439453125 MULTI HCD FTMS 0 0 0 7407 70868.2265625 0.008494048690982444 56 -1.4123153686523438 1 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 32.89776655970281 0.09794800747291528 2 DTTSK{M(Oxidation (M))|F} 6 3 51.419 0 0 4.7366 0 0 388.24580580879064 0 388.24580580879064 0 25.22160958700539 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + DTTSK{M(Oxidation (M))|F} 4.7366 + + 23 NaN NaN 101444.8 NaN 5049 2357 7407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7409 40.807 NaN 79664 35 0 5065.3 0.261 + 13083 KYLEETNSL 9 42 548.7798416165555 1095.5451302999109 2 548.7793579101562 MULTI HCD FTMS 0 0 0 7407 22449.16015625 0.21456963349753225 5 -0.13230514526367188 2 Unmodified _KYLEETNSL_ ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3 24.881564428377168 0.14538514251145815 2 EETNS{I|L} 6 3 49.117 0 0 4.4834 0 0 404.2417164533219 0 404.2417164533219 0 27.206225184280797 0 0 0 1.274227503252014 0 0 0 + EETNS{I|L} 4.4834 + + 56 NaN NaN 95819.8 NaN 5050 2357 7407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7410 40.81 NaN 42918 35 0 6019.2 0.261 -1 RYVQPMASF 9 20 557.7714487764194 1113.5283446196388 2 557.7717895507812 MULTI HCD FTMS 0 0 0 7407 10911.73828125 0.32183067801033094 2 -0.052898406982421875 3 Oxidation (M) _RYVQPM(Oxidation (M))ASF_ ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H 5.731851221503515 0.3075653528928475 2 Q[RP]{M(Oxidation (M))|F} 4 -1 21.198 0 0 1.9037 0 0 567.236131736525 0 567.236131736525 0 21.197887582883936 0 0 0 0.5 0 0 0 Q[RP]{M(Oxidation (M))|F} 1.9037 - 2 NaN NaN 93802.9 NaN 5051 2357 7407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7411 40.814 NaN 56162 35 0 8277.7 0.261 -1 SCHCYQGYEG 10 24 630.7231114511497 1259.4316699690994 2 630.7227783203125 MULTI HCD FTMS 0 0 0 7407 23383.58984375 0.8588452416196686 1 -0.023101806640625 4 2 Carbamidomethyl (C) _SC(Carbamidomethyl (C))HC(Carbamidomethyl (C))YQGYEG_ ENSG00000106302|ENST00000223026|HYAL4 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89560.3 NaN 5052 2357 7407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7412 40.817 NaN 72074 35 0 11308 0.262 + -1 CECEGSMTM 9 36 540.1597108572873 NaN 0 539.71630859375 PEAK HCD FTMS 0 0 0 7407 7554.84521484375 0.6173632913203614 -1 0.026458740234375 5 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))ECEGSM(Oxidation (M))TM(Oxidation (M))_ REV__ENST00000451892.1_1_1:240307909-240308467:-|nuORF 0.5247636613948944 0.2927039108006614 2 K 1 -1 5.4846 0 0 0.50863 0 0 573.2062900070529 373.9931734674438 947.1994634744967 0 0 0 0 0 0 0 0 0 K 0.50863 - 1 + NaN NaN 101804.1 NaN 5053 2357 7407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7413 40.82 NaN 30074 35 0 3074.5 0.261 + 774 ASQWRRWGT 9 28 574.2911687228678 1146.5677845125356 2 574.2908325195312 MULTI HCD FTMS 0 0 0 7407 8364.513671875 0.45394749464156947 39 -0.9915580749511719 6 Unmodified _ASQWRRWGT_ REV__ENST00000514123.5_1_16:69458605-69458701:+|nuORF 1.6526216038709556 0.33848895094777925 2 N 1 -1 3.4949 0 0 0.30481 0 0 499.3932372486668 530.1194552057249 1029.5126924543918 0 0 0 0 0 0 0 0 0 N 0.30481 - 1 + NaN NaN 88299.9 NaN 5054 2357 7407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7415 40.825 NaN 165520 35 0 13762 0.326 + -1 CMCVCPCVCL 10 59 420.8176226351962 1259.4310385057886 3 420.81768798828125 MULTI HCD FTMS 0 0 0 7414 59916.8203125 0.873349236386958 2 -0.049625396728515625 1 3 Carbamidomethyl (C),Oxidation (M) _CM(Oxidation (M))C(Carbamidomethyl (C))VC(Carbamidomethyl (C))PC(Carbamidomethyl (C))VCL_ REV__ENST00000481476.1_1_9:132501610-132501871:-|nuORF 2.0860074813731053 0.46426213543441425 2 {I|L} 1 -1 18.852 0 0 1.4968 0 0 1128.336386261451 0 1128.336386261451 0 15.356668758921828 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.4968 + + 8 + NaN NaN 118698.6 NaN 5055 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7416 40.83 NaN 107830 35 0 14181 0.261 + 19428 NPLRSEPAL 9 37 498.7773907564185 995.5402285796371 2 498.77734375 MULTI HCD FTMS 0 0 0 7414 54237.95703125 0.7520985489529978 6 -0.16536331176757812 2 Unmodified _NPLRSEPAL_ ENSG00000188647|ENST00000340434|PTAR1 24.990960013464015 0.14443998892849796 2 PA{I|L} 3 6 31.198 0 0 3.1338 0 0 696.3553625224527 0 696.3553625224527 0 31.197887582883936 0 0 0 0.5 0 0 0 + PA{I|L} 3.1338 + + 12 NaN NaN 119780.3 NaN 5056 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7417 40.833 NaN 87360 35 0 22236 0.463 + 13385 KYPASSSVF 9 39 493.25354715464573 984.4925413760915 2 493.2532958984375 MULTI HCD FTMS 0 0 0 7414 40885.7421875 0.9127881473367874 2 -0.049625396728515625 3 Unmodified _KYPASSSVF_ ENSG00000260027|ENST00000239165|HOXB7 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 24.464 0 0 2.4849 0 0 720.3448353498062 0 720.3448353498062 0 21.365006360318688 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.4849 + + 16 NaN NaN 106480.7 NaN 5057 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7418 40.84 NaN 180950 35 0 22576 0.261 + -1 YYPTSHCPMM 10 49 415.8294709820923 1244.4665835464768 3 415.82928466796875 MULTI HCD FTMS 0 0 0 7414 29086.138671875 0.8902026440365951 1 -0.029796600341796875 4 Oxidation (M) _YYPTSHCPM(Oxidation (M))M_ REV__ENSG00000069943|ENST00000164305|PIGB;REV__ENST00000569823.1_1_15:55642946-55643879:+|nuORF 1.9063754702782614 0.46521295622613185 2 H 1 -1 5.4846 0 0 0.44071 0 0 154.96717237626564 949.4108980768186 1104.3780704530843 0 0 0 0 0 0 0 0 0 H 0.44071 + + 10 + NaN NaN 108516.7 NaN 5058 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7419 40.843 NaN 129620 35 0 14166 0.261 + 19574 NSTSIEPRL 9 46 508.7722317944985 1015.529910655797 2 508.77197265625 MULTI HCD FTMS 0 0 0 7414 30961.0703125 0.30501214463409126 -4 0.08240509033203125 5 Unmodified _NSTSIEPRL_ CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4 22.65808497894818 0.16459551161911185 2 [NS]TS{I|L}E 6 3 33.945 0 0 3.3426 0 0 0 381.22510639639916 381.22510639639916 22.900990676322905 0 0 0 0 0.805462187404089 0 0.5 0 + [NS]TS{I|L}E 3.3426 + + 27 + NaN NaN 104005.4 NaN 5059 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7420 40.847 NaN 54064 35 0 6666.2 0.262 -1 0 28 407.55743365625244 1219.6504715689573 3 407.55706787109375 MULTI HCD FTMS 0 0 0 7414 20301.189453125 0.02818714851110199 44 -1.1197433471679688 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100171.4 NaN 5060 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7421 40.85 NaN 20029 35 0 4180.9 0.261 + -1 KTRSTQCGQD 10 21 590.7721410266435 NaN 0 590.7715454101562 PEAK HCD FTMS 0 0 0 7414 3921.8095703125 0.3162214963809909 4 -0.10920333862304688 7 Carbamidomethyl (C) _KTRSTQC(Carbamidomethyl (C))GQD_ REV__ENSG00000121741|ENST00000610343|ZMYM2;REV__ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84123.5 NaN 5061 2358 7414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7423 40.855 NaN 171420 35 0 50389 0.327 + 34769 YQLNKRLP 8 35 516.3035281529214 1030.5925033726428 2 516.303466796875 MULTI HCD FTMS 0 0 0 7422 45427.25390625 0.1432613988718429 8 -0.19491195678710938 1 Unmodified _YQLNKRLP_ ENSG00000138101|ENST00000406818|DTNB;ENST00000472690.5_1_2:25819066-25872751:-|nuORF;ENST00000493538.5_1_2:25803688-25875529:-|nuORF;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-7|DTNB 2.302733041254933 0.5385759549224092 2 AY 2 8 15.969 0 0 1.5495 0 0 150.1629255761348 643.3208818388865 793.4838074150214 0 0 0 0 0 0.5 0 0 0 AY 1.5495 - 9 + NaN NaN 110445.8 NaN 5062 2359 7422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7424 40.86 NaN 62694 35 0 4465.5 0.261 + 9413 HPTTTEYTF 9 50 548.7510659670654 1095.4875790009307 2 549.2505493164062 MULTI HCD FTMS 0 0 0 7422 24967.763671875 0.3283052584951314 14 -0.37088775634765625 2 Unmodified _HPTTTEYTF_ L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense 6.723162845929126 0.3000504726104499 2 T{M(Oxidation (M))|F} 2 7 22.831 0 0 2.0841 0 0 829.3585072248062 0 829.3585072248062 0 9.330984399557423 0 0 0 0.4247425010840047 0 0 0 + T{M(Oxidation (M))|F} 2.0841 + + 19 NaN NaN 100466.8 NaN 5063 2359 7422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7425 40.863 NaN 63699 35 0 6011.5 0.261 + 5785 FPATGCQKL 9 37 482.74947809706674 963.4844032609335 2 482.74993896484375 MULTI HCD FTMS 0 0 0 7422 42165.5546875 0.392426715977237 -12 0.2973899841308594 3 Unmodified _FPATGCQKL_ ENSG00000137154|ENST00000380394|RPS6 31.26834338654808 0.10542797264966089 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE 8 7 + 56.643 0 0 5.879 5.879 91.048 0 0 0 16.2101498947667 36.46591250700361 16.2101498947667 18.48258770979733 0 0 2 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]T[PS]{I|L} 5.879;3.9607 -;- 25 NaN NaN 95476.4 NaN 5064 2359 7422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7426 40.867 NaN 31131 35 0 4633.6 0.261 -1 YYCMCVPGF 9 25 606.7323842283382 1211.4502155234763 2 606.7316284179688 MULTI HCD FTMS 0 0 0 7422 12853.451171875 0.633965561654303 1 -0.01982879638671875 4 2 Carbamidomethyl (C),Oxidation (M) _YYC(Carbamidomethyl (C))M(Oxidation (M))C(Carbamidomethyl (C))VPGF_ ENSG00000162618|ENST00000370742|ADGRL4 2.302733041254933 0.33356062215410776 2 YY{[{M(Oxidation (M))|F}D]|MM}{[QV]|[N{I|L}]|[RA]|[KV]}V 7 -1 15.819 0 0 1.3058 0 0 0 294.01952639677637 294.01952639677637 14.22508200162774 0 0 0 0 1 1.6989700043360187 0 0 YY{[{M(Oxidation (M))|F}D]|MM}{[QV]|[N{I|L}]|[RA]|[KV]}V 1.3058 - 7 NaN NaN 83256.3 NaN 5065 2359 7422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7427 40.87 NaN 49968 35 0 7385.8 0.261 + 16862 LYETLVKKD 9 40 554.8161128691022 1107.6176728050043 2 554.8150024414062 MULTI HCD FTMS 0 0 0 7422 28019.8203125 0.16169967713598718 10 -0.2511444091796875 5 Unmodified _LYETLVKKD_ REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91464.5 NaN 5066 2359 7422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7429 40.875 NaN 372110 35 0 37098 0.327 + 14216 LATKTEVAL 9 51 473.2845165990483 944.5544802648966 2 473.2842102050781 MULTI HCD FTMS 0 0 0 7428 273703.28125 0.17604542602546677 7 -0.17508316040039062 1 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 86.33184430468982 0.004622086694044132 2 {I|L}ATK{[ET]|[MV]}VA{I|L} 9 0 + 81.555 0 0 8.6342 8.6342 93.945 0 0 0 73.59604846242681 10.642492736872597 10.642492736872597 10.356872858143603 0 2.249134866972623 1.5228787452803376 1.274227503252014 0 + + {I|L}ATK{[ET]|[MV]}VA{I|L};[{I|L}A]TK{[ET]|[MV]}VA{I|L};[{I|L}A]TK{[ES]|[DT]|[{I|L}C]}{I|L}A{I|L};[{I|L}A]T{NN|[MP]|[D{I|L}]|[EV]}[KT]A{I|L} 8.6342;7.5377;6.3468;4.9613 +;+;-;- + 177 + NaN NaN 139429.5 NaN 5067 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7430 40.879 NaN 194210 35 0 33238 0.261 + 26424 STGIPYGMSI 10 39 513.251955667925 1024.48935840265 2 513.2611083984375 MULTI HCD FTMS 0 0 0 7428 29342.689453125 1 0 0 2 Unmodified _STGIPYGMSI_ ENSG00000103449|ENST00000251020|SALL1;ENST00000438101.1_1_X:49431298-49432372:-|nuORF;nc|ENSG00000103449|Q9NSC2-2|SALL1 13.90604991867851 0.3810395177745597 2 SS{I|L} 3 7 27.536 0 0 2.6878 0 0 719.3305531232437 0 719.3305531232437 0 8.015384402724592 0 0 0 0.4247425010840047 0 0.4247425010840047 0 SS{I|L} 2.6878 - 20 NaN NaN 114005.2 NaN 5068 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7431 40.883 NaN 644680 35 0 43048 0.261 + 22832 QYLRRLHYF 9 73 432.5715107453068 1294.6927028361204 3 432.571533203125 MULTI HCD FTMS 0 0 0 7428 194348.078125 0.2907515800703791 -7 0.1484375 3 Unmodified _QYLRRLHYF_ ENSG00000183856|ENST00000361170|IQGAP3 21.536976647645854 0.1742816388551942 2 Y{M(Oxidation (M))|F} 2 7 24.776 0 0 1.9137 0 0 966.5500776034146 0 966.5500776034146 0 10.796896906561031 0 0 0 0.3807196863200844 0 0 0 + Y{M(Oxidation (M))|F} 1.9137 + + 8 NaN NaN 185045.3 NaN 5069 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7432 40.886 NaN 49425 35 0 4245.2 0.261 -1 0 42 419.3162578408133 418.3089813742133 1 419.3154602050781 MULTI HCD FTMS 0 0 0 7428 70910 0.43628646219327816 568 -14.241199493408203 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.4912 0 0 253.23021352928987 0 253.23021352928987 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.4912 - 1 + NaN NaN 88248.1 NaN 5070 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7433 40.89 NaN 40531 35 0 5031.6 0.261 + 33064 YDGTSDWGELP 11 23 620.2623976269292 1238.5102423206583 2 620.2621459960938 MULTI HCD FTMS 0 0 0 7428 36680.5078125 0.510761209733988 3 -0.09265899658203125 5 Unmodified _YDGTSDWGELP_ REV__ENSG00000167721|ENST00000301364|TSR1 2.735195868890462 0.4069250265843076 2 H 1 -1 8.8515 0 0 0.71469 0 0 744.2589433478053 354.16587244205317 1098.4248157898585 0 0 0 0 0 0.4247425010840047 0 0 0 H 0.71469 - 2 + NaN NaN 90237.5 NaN 5071 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7434 40.893 NaN 115900 35 0 19934 0.263 + 18549 MVDGKPVNL 9 44 486.7632082234681 971.5118635137362 2 486.7622375488281 MULTI HCD FTMS 0 0 0 7428 59474.21484375 0.7736007593029087 3 -0.09265899658203125 6 Unmodified _MVDGKPVNL_ ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 10.823927491677226 0.26684000660059787 2 [MN]S[VP]S 6 6 13.473 0 0 1.3868 0 0 0 353.21958337955317 353.21958337955317 2.2184874961635614 0 0 0 0 0 0 0.3807196863200844 0 [MN]S[VP]S 1.3868 - 18 + NaN NaN 110064.8 NaN 5072 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7435 40.896 NaN 151710 35 0 26242 0.261 -1 DMHTEVTTL 9 41 531.742144989856 1061.469737046512 2 531.7422485351562 MULTI HCD FTMS 0 0 0 7428 56687.375 0.10703356011045133 -10 0.231048583984375 7 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 26.88365393820708 0.12808753336095696 2 TT{I|L} 3 -1 40.005 0 0 3.7688 0 0 728.2810087212296 0 728.2810087212296 0 32.557809497117844 0 0 0 1 0 0.3807196863200844 0 TT{I|L} 3.7688 + + 50 NaN NaN 108428.8 NaN 5073 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7436 40.9 NaN 171120 35 0 19518 0.261 + 23729 RQYGSEGRFTF 11 42 449.8861234838215 1346.6365410516646 3 449.8859558105469 MULTI HCD FTMS 0 0 0 7428 41543.73046875 0.7833295069843207 -1 0.01982879638671875 8 Unmodified _RQYGSEGRFTF_ ENSG00000158604|ENST00000457408|TMED4;ENSG00000184840|ENST00000332598|TMED9;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;nc|ENSG00000158604|Q7Z7H5-2|TMED4;nc|ENSG00000158604|Q7Z7H5-3|TMED4 20.871137199558856 0.2752315090543355 2 {M(Oxidation (M))|F} 1 10 21.99 0 0 1.6329 0 0 1181.5575901012724 0 1181.5575901012724 0 20.880456295278407 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6329 + + 6 + NaN NaN 107469 NaN 5074 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7437 40.903 NaN 136300 35 0 14699 0.261 -1 AEEIVMYMNNM 11 50 454.1905826365835 1359.5499185099504 3 454.1910705566406 MULTI HCD FTMS 0 0 0 7428 34809.28125 0.9053570557732009 -3 0.07272720336914062 9 Oxidation (M) _AEEIVMYMNNM(Oxidation (M))_ ENSG00000174485|ENST00000443035|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;nc|ENSG00000174485|Q7Z401|DENND4A 1.3296431237094175 0.4130893034510334 2 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3209 0 0 1038.370610503894 0 1038.370610503894 0 7.501225267834 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3209 - 32 + NaN NaN 108661.4 NaN 5075 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7438 40.906 NaN 87780 35 0 8263.5 0.261 -1 AYVHMVTHF 9 48 560.7657330135318 1119.5169130938634 2 560.7659301757812 MULTI HCD FTMS 0 0 0 7428 30251.357421875 0.02686552845287032 152 -4.040630340576172 10 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 34.10243960390752 0.09241788333544565 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH[{M(Oxidation (M))|F}V]T{[{M(Oxidation (M))|F}H]|[RQ]} 9 -1 + 54.441 0 0 4.8629 4.8629 91.395 0 0 0 40.48840924329106 6.667724800373449 6.667724800373449 54.4408341705779 0 1.1307196863200843 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VH[{M(Oxidation (M))|F}V]T{[{M(Oxidation (M))|F}H]|[RQ]} 4.8629 + + 67 + NaN NaN 101346.6 NaN 5076 2360 7428 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7440 40.911 NaN 1481000 35 0 321940 0.327 + 35409 YYEEQHPEL 9 79 604.2670384843465 1206.5195240354929 2 604.2671508789062 MULTI HCD FTMS 0 0 0 7439 956331.625 0.4464675120775202 4 -0.09912872314453125 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 199.7497906028788 1.768571556262374E-17 2 YYEEQH[EP]{I|L} 9 0 + 97.432 0 0 8.0754 8.0754 95.035 0 0 0 1.6368904626891378 27.20159303405957 1.6368904626891378 20.07515625508539 0 2.4247425010840047 2 1.5484550065040281 1.086696871556164 + + YYEEQH[EP]{I|L};YYEE[AG]H[EP]{I|L};[YE]YEQH[EP]{I|L};EEYYQH[EP]{I|L};[YE]EYQH[EP]{I|L};YYETQ{NN|[MP]|[D{I|L}]|[EV]}Y{I|L};[EP]{I|L}HEQEYY;[EP]{I|L}HQEEYY;[YE]YE[AG]H[EP]{I|L};EEYY[AG]H[EP]{I|L} 8.0754;6.4115;5.7539;5.4481;5.2891;4.4413;4.2063;4.1027;4.09;3.7842 +;-;-;-;-;-;-;-;-;- + 2120 NaN NaN 320708.8 NaN 5077 2361 7439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7441 40.916 NaN 104070 35 0 23508 0.261 + 24804 RYPDSHQLF 9 27 581.7857509051602 1161.5569488771202 2 581.7854614257812 MULTI HCD FTMS 0 0 0 7439 48290.359375 0.5496264889911819 4 -0.09912872314453125 2 Unmodified _RYPDSHQLF_ ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2 7.101721422024254 0.29718071671418667 2 Q{I|L}{M(Oxidation (M))|F} 3 6 26.198 0 0 2.2554 0 0 755.334397056655 0 755.334397056655 0 19.20818753952375 0 0 0 0 0 0 0 + Q{I|L}{M(Oxidation (M))|F} 2.2554 + + 4 NaN NaN 96743 NaN 5078 2361 7439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7442 40.919 NaN 246030 35 0 25154 0.261 + 31574 VYIDKVRSL 9 34 546.8245266501648 1091.6345003671295 2 546.8244018554688 MULTI HCD FTMS 0 0 0 7439 88727.25 0.4911894945687587 -2 0.05626678466796875 3 Unmodified _VYIDKVRSL_ ENSG00000113368|ENST00000261366|LMNB1 53.31671820480216 0.026930930319421505 2 VY{I|L}DKV 6 3 88.448 0 0 8.1024 0 0 0 371.20456873111567 371.20456873111567 69.40736592247681 0 0 0 0 1.274227503252014 2 0.805462187404089 0.3494850021680094 + VY{I|L}DKV 8.1024 + + 67 + NaN NaN 119601.7 NaN 5079 2361 7439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7443 40.923 NaN 135230 35 0 12171 0.261 + 333 AGIWGAYLSY 10 45 550.7717955588738 NaN 0 550.7833251953125 PEAK HCD FTMS 0 0 0 7439 4597.90087890625 0.5165128875615219 1 -0.02313995361328125 4 Unmodified _AGIWGAYLSY_ REV__ENSG00000013297|ENST00000064724|CLDN11;REV__ENST00000489485.5_1_3:170139112-170150541:+|nuORF 6.2057823575117 0.3348729994311477 2 D 1 -1 7.8567 0 0 0.71455 0 0 184.06176631130376 797.4163566206855 981.4781229319892 0 0 0 0 0 0 0 0.3252574989159953 0 D 0.71455 - 34 + NaN NaN 112986.4 NaN 5080 2361 7439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7444 40.926 NaN 48701 35 0 6030.9 0.261 + 27500 TAAAENIRL 9 36 479.7695306261124 957.5245083190248 2 479.7689514160156 MULTI HCD FTMS 0 0 0 7439 28220.876953125 0.3377593980406756 4 -0.09912872314453125 5 Unmodified _TAAAENIRL_ chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229|ITGA6 11.494710602746466 0.2610445893512368 2 AA[PG] 4 7 25.445 0 0 2.6574 0 0 643.3647184175934 0 643.3647184175934 0 10.841218823962109 0 0 0 0.9247425010840047 0 0 0 AA[PG] 2.6574 - 18 NaN NaN 98738.1 NaN 5081 2361 7439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7445 40.929 NaN 61248 35 0 7951.2 0.261 -1 0 42 407.55743365625244 1219.6504715689573 3 407.5574951171875 MULTI HCD FTMS 0 0 0 7439 12923.9970703125 0.01794429955048124 47 -1.1779975891113281 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94370.7 NaN 5082 2361 7439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7447 40.935 NaN 163570 35 0 33374 0.327 -1 0 30 638.3203842906942 1274.6262156481882 2 638.320068359375 MULTI HCD FTMS 0 0 0 7446 84625.9921875 0.17328519734316208 7 -0.1717376708984375 1 NaN NaN 2 {I|L}E[PA]NQE{I|L} 8 -1 64.558 0 0 5.0648 0 0 362.1678639142594 0 362.1678639142594 0 50.74539712336197 0 0 0 1.774227503252014 0 0.3807196863200844 0.4247425010840047 {I|L}E[PA]NQE{I|L} 5.0648 - 164 NaN NaN 114692.9 NaN 5083 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7448 40.939 NaN 400700 35 0 89989 0.261 + 25863 SMQMKAPVTL 10 52 553.2893702419788 NaN 0 553.3036499023438 PEAK HCD FTMS 0 0 0 7446 7747.12353515625 1 0 0 2 Unmodified _SMQMKAPVTL_ ENSG00000182606|ENST00000327628|TRAK1 6.723162845929126 0.3344301934401713 2 T 1 9 11.237 0 0 1.0173 0 0 131.06734481769996 869.4272822145103 1000.4946270322102 0 0 0 0 0 0 0 0.4247425010840047 0 + T 1.0173 + + 21 + NaN NaN 143265.4 NaN 5084 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7449 40.943 NaN 73618 35 0 10324 0.261 + 11919 KFIDTTSKF 9 26 543.7950986694144 1085.5756444056287 2 543.7949829101562 MULTI HCD FTMS 0 0 0 7446 72599.4765625 0.008701551016207055 61 -1.5602836608886719 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 26.020703789607367 0.13554323117744113 2 K{M(Oxidation (M))|F}{I|L}D 4 5 43.928 0 0 4.0465 0 0 0 579.2770308779263 579.2770308779263 22.95880017344075 0 0 0 0 1 0 0.5 0 + K{M(Oxidation (M))|F}{I|L}D 4.0465 + + 28 + NaN NaN 92456.5 NaN 5085 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7450 40.946 NaN 130920 35 0 42063 0.262 + 29548 TYYRIFKVAR 10 33 439.5874079714615 1315.7403945145845 3 439.587158203125 MULTI HCD FTMS 0 0 0 7446 35956.078125 0.7541960384854195 1 -0.0330810546875 4 Unmodified _TYYRIFKVAR_ ENSG00000113749|ENST00000636584|HRH2;nc|ENSG00000113749|P25021-2|HRH2;nc|ENSG00000113749|P25021|HRH2 3.3196427980023873 0.4577323075863651 2 TY 2 8 45.217 0 0 3.4366 0 0 0 1048.6044115226837 1048.6044115226837 45.21652514092061 0 0 0 0 0.4247425010840047 2 0 0 + TY 3.4366 + + 6 + NaN NaN 106254.6 NaN 5086 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7451 40.949 NaN 88667 35 0 13367 0.261 + 30503 VMHVPMNF 8 39 487.7327431263528 973.4509333195056 2 487.73260498046875 MULTI HCD FTMS 0 0 0 7446 22713.81640625 0.12060565902783833 11 -0.29148101806640625 5 Unmodified _VMHVPMNF_ REV__ENSG00000012817|ENST00000317961|KDM5D;REV__ENSG00000073614|ENST00000399788|KDM5A;REV__ENSG00000117139|ENST00000367265|KDM5B;REV__ENSG00000126012|ENST00000375401|KDM5C;REV__KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;REV__nc|ENSG00000012817|Q9BY66-2|KDM5D;REV__nc|ENSG00000012817|Q9BY66-3|KDM5D;REV__nc|ENSG00000073614|P29375-2|KDM5A;REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B;REV__nc|ENSG00000126012|P41229-2|KDM5C;REV__nc|ENSG00000126012|P41229-3|KDM5C;REV__nc|ENSG00000126012|P41229-4|KDM5C;REV__nc|ENSG00000126012|P41229-5|KDM5C 2.8892196856762586 0.5377058178582064 2 V{I|L} 2 -1 19.464 0 0 1.9995 0 0 743.2885768166856 0 743.2885768166856 0 2.4742501084004687 0 0 0 0 0 0 0 V{I|L} 1.9995 - 6 NaN NaN 98547.7 NaN 5087 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7452 40.953 NaN 166180 35 0 33715 0.261 + 25009 RYVRKFVLM 9 46 404.5741841413624 1210.7007230242873 3 404.5743408203125 MULTI HCD FTMS 0 0 0 7446 38416.83203125 0.3953386446015484 -5 0.13230514526367188 6 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.3292370932331545 0.3181982124262546 2 {I|L}M 2 7 25.969 0 0 2.145 0 0 948.5664359792465 0 948.5664359792465 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}M 2.145 + + 2 NaN NaN 106911.1 NaN 5088 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7453 40.956 NaN 20836 35 0 6513.5 0.261 + -1 MLCCACWFF 9 12 619.2358810296053 1236.4572091260104 2 619.2351684570312 MULTI HCD FTMS 0 0 0 7446 9688.884765625 0.09555412082201166 23 -0.5835990905761719 7 2 Carbamidomethyl (C) _MLC(Carbamidomethyl (C))C(Carbamidomethyl (C))ACWFF_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF;REV__nc|ENSG00000123843|P20851-2|C4BPB 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85718.9 NaN 5089 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7454 40.959 NaN 53587 35 0 14543 0.261 + -1 MHLHTMMAQL 10 17 630.780067142796 1259.545581352392 2 630.7805786132812 MULTI HCD FTMS 0 0 0 7446 34074.796875 0.8120836140542915 -7 0.17852783203125 8 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 5.731851221503515 0.44496410492002586 2 {I|L}AQ{I|L} 4 -1 36.186 0 0 2.8729 0 0 816.2761097638687 0 816.2761097638687 0 36.18562527100117 0 0 0 0 0 0 0.4247425010840047 {I|L}AQ{I|L} 2.8729 - 9 NaN NaN 90529.3 NaN 5090 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7455 40.963 NaN 28234 35 0 5913.4 0.261 + 22592 QTHRFNRHV 9 21 597.8154127553832 NaN 0 597.8134155273438 PEAK HCD FTMS 0 0 0 7446 7979.11328125 0.051900764735105125 58 -1.4844436645507812 9 Unmodified _QTHRFNRHV_ REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF;REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87499.7 NaN 5091 2362 7446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7457 40.968 NaN 120710 35 0 11535 0.327 -1 RYQQWMERF 9 47 453.88003143201183 1358.6182648962356 3 453.880126953125 MULTI HCD FTMS 0 0 0 7456 30692.82421875 0.052436282549434776 -23 0.5888137817382812 1 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 16.565877749689598 0.21723083036893404 2 R{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.1922 0 0 1037.4387127495543 0 1037.4387127495543 0 1.4659125070036083 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.1922 + + 25 + NaN NaN 102411.9 NaN 5092 2363 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7458 40.972 NaN 70990 35 0 6050.1 0.261 -1 MPSPVSPKL 9 42 486.2648599756756 NaN 0 486.2641296386719 PEAK HCD FTMS 0 0 0 7456 25831.640625 0.5751755755865458 7 -0.17177200317382812 2 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 27.628801355627647 0.1361920736132224 2 S[VP]S 4 -1 16.555 0 0 1.7057 0 0 244.09452282945784 353.21848474674067 597.3130075761985 0 0 0 0 0 0.805462187404089 0 0.3807196863200844 0 S[VP]S 1.7057 + + 11 + NaN NaN 97016.4 NaN 5093 2363 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7459 40.976 NaN 121050 35 0 13136 0.261 + 10989 IYEFHVSV 8 45 497.25412131254456 992.4936896918891 2 497.25469970703125 MULTI HCD FTMS 0 0 0 7456 32864.13671875 1 0 0 3 Unmodified _IYEFHVSV_ ENST00000398421.6_1_7:74188378-74193456:+|nuORF 8.593279151180031 0.5292430274356741 2 VSVV 4 6 21.146 0 0 2.1306 0 0 590.235155174025 0 590.235155174025 0 8.443350238481031 0 0 0 0 0 0 0 VSVV 2.1306 - 45 NaN NaN 96517 NaN 5094 2363 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7460 40.979 NaN 56974 35 0 12458 0.261 -1 TDHVECLQL 9 30 557.7629992751836 1113.511445617167 2 557.7625732421875 MULTI HCD FTMS 0 0 0 7456 26976.734375 0.710082604927506 -2 0.05622100830078125 4 Carbamidomethyl (C) _TDHVEC(Carbamidomethyl (C))LQL_ ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28;nc|ENSG00000206560|O15084-2|ANKRD28;nc|ENSG00000206560|O15084|ANKRD28 10.823927491677226 0.26684000660059787 2 S{I|L}Q{I|L} 4 -1 40.433 0 0 3.6311 0 0 654.2452870099625 0 654.2452870099625 0 33.44335023848103 0 0 0 0 0 0.8494850021680094 0 S{I|L}Q{I|L} 3.6311 - 11 NaN NaN 92503.3 NaN 5095 2363 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7461 40.982 NaN 62298 35 0 9183.2 0.261 -1 LADPVSNMAM 10 30 540.7390013926657 1079.4634498521314 2 541.2409057617188 MULTI HCD FTMS 0 0 0 7456 3909.27294921875 0.2499063731846558 1 -0.02307891845703125 5 2 Oxidation (M) _LADPVSNM(Oxidation (M))AM(Oxidation (M))_ ENSG00000167645|ENST00000339413|YIF1B;ENST00000585563.5_1_19:38798235-38806107:-|nuORF;ENST00000587361.1_1_19:38799650-38806369:-|nuORF;ENST00000589644.1_1_19:38799729-38806557:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B 13.614867670302875 0.3837631382804675 2 [W{I|L}][VP]S 5 -1 15.33 0 0 1.4201 0 0 0 494.13962732486567 494.13962732486567 15.329693599488294 0 0 0 0 1.4247425010840047 0 0 0 [W{I|L}][VP]S 1.4201 - 3 + NaN NaN 90731.4 NaN 5096 2363 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7462 40.986 NaN 18284 35 0 3688.1 0.261 -1 NCCEECCC 8 16 596.1544799804688 NaN 0 596.1544799804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 5 Carbamidomethyl (C) _NC(Carbamidomethyl (C))C(Carbamidomethyl (C))EEC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENSG00000186860|ENST00000334202|KRTAP17-1 0 0.38822285293237185 2 M 1 -1 3.9794 0 0 0.33432 0 0 835.2341536855785 221.00106226138908 1056.2352159469676 0 0 0 0 0 0 0 0 0 M 0.33432 - 1 + NaN NaN 82926.9 NaN 5097 2363 7456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7464 40.991 NaN 186810 35 0 29233 0.327 + 19575 NSTSIEPRL 9 39 508.7722317944985 1015.529910655797 2 508.77215576171875 MULTI HCD FTMS 0 0 0 7463 90444 0.8910066134938549 2 -0.03955841064453125 1 Unmodified _NSTSIEPRL_ CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4 45.739877483867886 0.03899552410870734 2 [NS]TS{I|L}E 6 3 41.401 0 0 4.0768 0 0 0 381.2253136148829 381.2253136148829 33.44212497064703 0 0 0 0 1.25 0 0.5 0 + [NS]TS{I|L}E 4.0768 + + 30 + NaN NaN 110085.7 NaN 5098 2364 7463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7465 40.995 NaN 39735 35 0 5875 0.261 + 8136 GNQIGAKFWE 10 37 575.2877663720916 1148.560979810983 2 575.7894897460938 MULTI HCD FTMS 0 0 0 7463 14019.259765625 0.5647410940815671 1 -0.01982879638671875 2 Unmodified _GNQIGAKFWE_ CON__ENSEMBL:ENSBTAP00000025008;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant 2.9952420565917617 0.4594494122822477 2 ME 2 9 19.464 0 0 1.6946 0 0 870.4394398419937 0 870.4394398419937 0 16.989700043360187 0 0 0 0 0 0 0 ME 1.6946 - 2 NaN NaN 93898.4 NaN 5099 2364 7463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7466 40.999 NaN 26797 35 0 4919.3 0.261 + 5478 FIRPCTKIKSC 11 10 648.3542714389004 1294.6939899446006 2 648.35400390625 MULTI HCD FTMS 0 0 0 7463 15598.09765625 0.7485869017684186 1 -0.01982879638671875 3 Unmodified _FIRPCTKIKSC_ ENST00000297857.3_1_8:124261964-124262105:-|nuORF 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92891.4 NaN 5100 2364 7463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7467 41.002 NaN 42238 35 0 6353 0.264 + 20632 PFDTVFIF 8 29 493.25354715464573 984.4925413760915 2 493.251953125 MULTI HCD FTMS 0 0 0 7463 3506.08935546875 0.0782746413774038 8 -0.19815444946289062 4 Unmodified _PFDTVFIF_ ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB 2.302733041254933 0.5385759549224092 2 C[KS]{M(Oxidation (M))|F} 4 7 12.703 0 0 1.2903 0 0 501.27598769355626 0 501.27598769355626 0 8.723637474483468 0 0 0 0 0 0 0 C[KS]{M(Oxidation (M))|F} 1.2903 - 4 NaN NaN 100647.6 NaN 5101 2364 7463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7468 41.005 NaN 50982 35 0 5189.3 0.261 + 25925 SPAPEEKAVTL 11 29 571.3088046556123 1140.6030563780246 2 571.3088989257812 MULTI HCD FTMS 0 0 0 7463 19594.314453125 0.4746851799909684 -1 0.02307891845703125 5 Unmodified _SPAPEEKAVTL_ ENSG00000197077|ENST00000358431|KIAA1671 6.1918466704503565 0.39176533041107 2 [PS]A 3 8 15.458 0 0 1.3552 0 0 0 882.4565041870995 882.4565041870995 15.45757490560675 0 0 0 0 0.5 0 0 0 + [PS]A 1.3552 + + 4 + NaN NaN 96917.1 NaN 5102 2364 7463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7470 41.011 NaN 112550 35 0 13912 0.327 + 5786 FPATGCQKL 9 37 482.74947809706674 963.4844032609335 2 482.7494201660156 MULTI HCD FTMS 0 0 0 7469 88601.03125 0.8245927744415861 -6 0.1553955078125 1 Unmodified _FPATGCQKL_ ENSG00000137154|ENST00000380394|RPS6 57.72198328787511 0.020768266150574023 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE 8 7 + 69.385 0 0 7.2015 7.2015 87.917 0 0 0 12.575156255085389 48.4163750790475 12.575156255085389 4.515449934959719 0 0.8494850021680094 2 0.8494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[R{M(Oxidation (M))|F}]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{[RE]|[WV]}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[C(Carbamidomethyl (C))Q]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{[RE]|[WV]}M{I|L} 7.2015;6.7329;5.7452;5.7173;5.5625 -;-;-;-;- 74 NaN NaN 99247.2 NaN 5103 2365 7469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7471 41.015 NaN 81739 35 0 27548 0.261 + -1 LCPHLLRPE 9 27 567.8077609623211 1133.6009689914422 2 567.8082885742188 MULTI HCD FTMS 0 0 0 7469 15610.5927734375 0.2778692173849679 -4 0.09912872314453125 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))PHLLRPE_ REV__ENST00000368842.9_1_10:126301864-126302287:+|nuORF 4.3292370932331545 0.3181982124262546 2 {I|L} 1 -1 6.9897 0 0 0.61659 0 0 63.99892689092969 953.4939049351057 1017.4928318260354 0 0 0 0 0 0 0 0 0 {I|L} 0.61659 + + 2 + NaN NaN 94804.7 NaN 5104 2365 7469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7472 41.019 NaN 114240 35 0 9005.9 0.261 -1 VHVCVFHL 8 51 505.766582255701 NaN 0 505.7666931152344 PEAK HCD FTMS 0 0 0 7469 16105.853515625 0.8294968928810729 -2 0.04290771484375 3 Carbamidomethyl (C) _VHVC(Carbamidomethyl (C))VFHL_ ENST00000367204.5_1_1:204095788-204096322:+|nuORF 6.354104778181461 0.38822285293237185 2 AMD 3 -1 7.7917 0 0 0.77182 0 0 131.09535115805653 558.3042696588499 689.3996208169065 0 0 0 0 0 0 0 0 0 AMD 0.77182 - 7 + NaN NaN 95965.8 NaN 5105 2365 7469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7473 41.022 NaN 36628 35 0 5575.7 0.261 -1 TEMVECSL 8 30 492.7042973904869 983.3940418477738 2 492.7044677734375 MULTI HCD FTMS 0 0 0 7469 15243.0498046875 0.08156567705631701 61 -1.5667495727539062 4 Carbamidomethyl (C),Oxidation (M) _TEM(Oxidation (M))VEC(Carbamidomethyl (C))SL_ ENSG00000012779|ENST00000374391|ALOX5;ENST00000483623.2_1_10:45920415-45923886:+|nuORF;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5 4.75600775471527 0.5349361699807423 2 S{I|L} 2 -1 22.959 0 0 2.3346 0 0 765.2640248029312 0 765.2640248029312 0 22.95880017344075 0 0 0 0.5 0 0 0 S{I|L} 2.3346 + + 5 NaN NaN 84343.6 NaN 5106 2365 7469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7474 41.025 NaN 18639 35 0 4174.5 0.261 + 25902 SNNFDEEDDM 10 16 608.2085633919863 NaN 0 607.8072509765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _SNNFDEEDDM_ REV__ENSG00000169744|ENST00000304523|LDB2;REV__ENST00000441778.6_1_4:16504268-16507504:-|nuORF;REV__ENST00000502640.5_1_4:16504268-16504550:-|nuORF;REV__nc|ENSG00000169744|O43679-3|LDB2 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82352.6 NaN 5107 2365 7469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7476 41.03 NaN 1567900 35 0 116700 0.327 + 22833 QYLRRLHYF 9 85 432.5715107453068 1294.6927028361204 3 432.57159423828125 MULTI HCD FTMS 0 0 0 7475 613123.5625 0.9172544760674095 -1 0.0197296142578125 1 Unmodified _QYLRRLHYF_ ENSG00000183856|ENST00000361170|IQGAP3 47.748688679222035 0.03472022231463587 2 HY{M(Oxidation (M))|F} 3 6 31.972 0 0 2.4695 0 0 829.4914221738142 0 829.4914221738142 0 1.3105596481680593 0 0 0 1 0 0 0 + HY{M(Oxidation (M))|F} 2.4695 + + 48 + NaN NaN 310200.2 NaN 5108 2366 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7477 41.035 NaN 853990 35 0 111790 0.261 + 2313 DMHTEVTTL 9 81 531.742144989856 1061.469737046512 2 531.7421875 MULTI HCD FTMS 0 0 0 7475 280263.40625 0.5291758551109346 -4 0.0957183837890625 2 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 54.773552608820026 0.024892918755467567 2 VTT{I|L} 4 5 50.235 0 0 4.7326 0 0 629.2097107517656 0 629.2097107517656 0 19.12794683835358 0 0 0 1.3252574989159953 0 0.805462187404089 0 + VTT{I|L} 4.7326 + + 574 NaN NaN 206454.6 NaN 5109 2366 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7478 41.038 NaN 81004 35 0 9431.2 0.261 + 14217 LATKTEVAL 9 30 473.2845165990483 944.5544802648966 2 473.2842102050781 MULTI HCD FTMS 0 0 0 7475 43699.67578125 0.02810754772449382 13 -0.3704986572265625 3 Unmodified _LATKTEVAL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 19.256988751693697 0.19398022840297344 2 A{I|L} 2 7 21.454 0 0 2.2713 0 0 742.4227817423147 0 742.4227817423147 0 12.501225267834 0 0 0 0.5 0 0 0 + A{I|L} 2.2713 + + 13 NaN NaN 101401.7 NaN 5110 2366 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7479 41.042 NaN 55779 35 0 7190.5 0.261 -1 YMIPASGSAL 10 36 513.251955667925 1024.48935840265 2 513.2614135742188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YM(Oxidation (M))IPASGSAL_ ENSG00000198678|ENST00000328207|OR5BS1P 6.2057823575117 0.44245551207394906 2 T 1 -1 5.4846 0 0 0.53534 0 0 297.2487710997187 623.1829928033811 920.4317639030999 0 0 0 0 0 0 0 0 0 T 0.53534 - 4 + NaN NaN 94854.6 NaN 5111 2366 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7480 41.045 NaN 91705 35 0 11554 0.261 -1 SYMPTVSHL 9 35 525.7498688832401 1049.48518483328 2 525.7494506835938 MULTI HCD FTMS 0 0 0 7475 26214.720703125 0.9341533626442552 2 -0.049556732177734375 5 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ ENSG00000168000|ENST00000360796|BSCL2;nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F}[MT] 3 -1 15.458 0 0 1.4729 0 0 652.3530644504642 0 652.3530644504642 0 8.467874862246562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[MT] 1.4729 - 6 NaN NaN 98017.6 NaN 5112 2366 7475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7482 41.05 NaN 395960 35 0 94005 0.327 + 35410 YYEEQHPEL 9 39 604.2670384843465 1206.5195240354929 2 604.2669677734375 MULTI HCD FTMS 0 0 0 7481 238385.21875 0.11129115962401424 10 -0.30141448974609375 1 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 80.6760300276096 0.005633624786464751 2 YYEEQH 6 3 90.993 0 0 7.5418 0 0 0 354.1666989165528 354.1666989165528 77.53251190138187 0 0 0 0 2.079689690656103 2 0.805462187404089 0.25 + YYEEQH 7.5418 + + 133 + NaN NaN 144110.1 NaN 5113 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7483 41.055 NaN 200370 35 0 17620 0.261 + 31575 VYIDKVRSL 9 57 546.8245266501648 1091.6345003671295 2 546.8245239257812 MULTI HCD FTMS 0 0 0 7481 80945.9609375 0.4481126783516125 4 -0.1157379150390625 2 Unmodified _VYIDKVRSL_ ENSG00000113368|ENST00000261366|LMNB1 28.494509381512117 0.11816142465008336 2 VY{I|L}DKV 6 3 74.641 0 0 6.8376 0 0 0 371.2043856256469 371.2043856256469 53.21456278567766 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0.4247425010840047 + VY{I|L}DKV 6.8376 + + 67 + NaN NaN 115984.1 NaN 5114 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7484 41.058 NaN 85794 35 0 8647.7 0.261 + 17822 MGLSFPEIEP 10 41 560.2750008641458 1118.5354487950915 2 560.7659912109375 MULTI HCD FTMS 0 0 0 7481 5855.01953125 1 0 0 3 Unmodified _MGLSFPEIEP_ REV__ENST00000563678.1_1_16:31714490-31715590:+|nuORF 6.723162845929126 0.4397169348982109 2 YHV{[QS]|[NT]} 5 -1 10.942 0 0 0.97825 0 0 486.2242603986344 0 486.2242603986344 0 -0.5115252244738144 -0.5115252244738144 0 0 0 0 0 0 YHV{[QS]|[NT]} 0.97825 - 37 NaN NaN 92738.5 NaN 5115 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7485 41.061 NaN 136000 35 0 14338 0.261 + 22065 QGYYPCVPSF 10 45 580.7566195408785 1159.498686148557 2 581.271728515625 MULTI HCD FTMS 0 0 0 7481 7000.4404296875 0.48276669060144445 6 -0.17597579956054688 4 Unmodified _QGYYPCVPSF_ REV__ENST00000280612.9_1_4:139163161-139163278:-|nuORF 6.723162845929126 0.4397169348982109 2 HGYPY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 7 -1 27.813 0 0 2.3987 0 0 290.12662911906324 0 290.12662911906324 0 20.8237120641928 0 0 0 0 0 0.7134679910804405 0 HGYPY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.3987 - 78 + NaN NaN 106134.2 NaN 5116 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7486 41.065 NaN 141180 35 0 21233 0.264 + 34807 YRDLKLDNLL 10 38 421.5752661339873 NaN 0 421.5749206542969 PEAK HCD FTMS 0 0 0 7481 17306.119140625 0.4962306392254783 40 -1.0067176818847656 5 Unmodified _YRDLKLDNLL_ ENSG00000065243|ENST00000370521|PKN2;ENSG00000123143|ENST00000242783|PKN1;ENSG00000160447|ENST00000291906|PKN3;nc|ENSG00000065243|Q16513-2|PKN2;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000123143|Q16512-2|PKN1 1.4551175022131473 0.3389389101219087 2 C 1 10 1.1092 0 0 0.13187 0 0 437.99188861387466 297.1094149225219 735.1013035363966 0 0 0 0 0 0 0 0 0 C 0.13187 - 2 + NaN NaN 106222.9 NaN 5117 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7487 41.068 NaN 58786 35 0 9593.8 0.261 + 28856 TVNTSLNVYR 10 28 583.8115852259883 1165.6086175187766 2 583.8110961914062 MULTI HCD FTMS 0 0 0 7481 25612.421875 0.5542805257396579 -1 0.019786834716796875 6 Unmodified _TVNTSLNVYR_ ENSG00000113845|ENST00000494664|TIMMDC1 27.223235318498237 0.2564750587861972 2 {[TV]|[{I|L}S]}NTS{I|L}{[NV]|[RG]}[YR] 10 0 + 65.418 0 0 5.6124 5.6124 87.141 0 0 0 65.41833743429045 6.544387449636204 6.544387449636204 9.164539485499255 0 0.8494850021680094 2 0.4247425010840047 0 + + {[TV]|[{I|L}S]}NTS{I|L}{[NV]|[RG]}[YR];{[TV]|[{I|L}S]}GGTS{I|L}{[NV]|[RG]}[YR] 5.6124;4.8261 +;- + 42 + NaN NaN 95165.3 NaN 5118 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7488 41.071 NaN 56841 35 0 6106.3 0.261 -1 LADPVSNMAM 10 27 540.7390013926657 1079.4634498521314 2 540.7388916015625 MULTI HCD FTMS 0 0 0 7481 14738.5537109375 0.672682199817329 6 -0.17597579956054688 7 2 Oxidation (M) _LADPVSNM(Oxidation (M))AM(Oxidation (M))_ ENSG00000167645|ENST00000339413|YIF1B;ENST00000585563.5_1_19:38798235-38806107:-|nuORF;ENST00000587361.1_1_19:38799650-38806369:-|nuORF;ENST00000589644.1_1_19:38799729-38806557:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B 7.101721422024254 0.4377131641736035 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94247.3 NaN 5119 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7489 41.075 NaN 66286 35 0 7332.3 0.261 + 28957 TYAKQYEEF 9 29 589.7717092005471 1177.528865467894 2 589.7732543945312 MULTI HCD FTMS 0 0 0 7481 31153.0859375 0.9444889406236747 -1 0.019786834716796875 8 Unmodified _TYAKQYEEF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 14.405379775768559 0.2358970535022398 2 [YT]A 3 6 29.749 0 0 2.5264 0 0 0 839.3581637018186 839.3581637018186 3.5514342509639363 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 + [YT]A 2.5264 + + 13 + NaN NaN 96155.5 NaN 5120 2367 7481 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7491 41.08 NaN 1092200 35 0 265120 0.327 + 24900 RYQTQPVTL 9 49 553.3035279126148 1104.5925028920294 2 553.3035278320312 MULTI HCD FTMS 0 0 0 7490 484990.53125 0.8994864017836144 1 -0.026462554931640625 1 Unmodified _RYQTQPVTL_ ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-3|SVIL;nc|ENSG00000197321|O95425-4|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant 38.175570920033316 0.07371992880350783 2 T{I|L}{[YC]|[HE]}[VP]T{I|L} 8 5 37.88 0 0 3.4293 0 0 196.12088210273595 0 196.12088210273595 0 20.96910013008056 0 0 0 1 0 0.8494850021680094 0 T{I|L}{[YC]|[HE]}[VP]T{I|L} 3.4293 - 148 NaN NaN 251337 NaN 5121 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7492 41.084 NaN 860680 35 0 77199 0.261 + 18933 NAFKEITTM 9 81 535.7627051998916 1069.510857466583 2 535.7626342773438 MULTI HCD FTMS 0 0 0 7490 323396.625 0.6167875385302533 -4 0.08911514282226562 2 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 155.95374464489888 2.532374632554729E-06 2 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 111.55 0 0 10.43 10.43 93.557 0 0 0 9.144754574206345 9.144754574206345 9.144754574206345 9.144754574206345 0 2.943672679568534 1.5228787452803376 1.3851518780601921 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}K{I|L}ETT{M(Oxidation (M))|F} 10.43;9.5747;8.5616 +;+;- + 402 + NaN NaN 218789.8 NaN 5122 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7493 41.088 NaN 164080 35 0 20723 0.261 + 182 AESIVRIDGG 10 50 508.7722317944985 1015.529910655797 2 509.7637023925781 MULTI HCD FTMS 0 0 0 7490 8427.12890625 0.3601953459250756 5 -0.14620590209960938 3 Unmodified _AESIVRIDGG_ REV__ENSG00000198130|ENST00000359678|HIBCH;REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH 18.1463463914782 0.3413772152514074 2 [TP]S{I|L}VVHTY 9 -1 [TP] + + 46.943 1.0033 0.50646 4.6225 4.6225 61.736 0 0 0 0 14.47698543561387 0 0 0 0 0 0.4247425010840047 0 [TP]S{I|L}VVHTY 4.6225 - 119 + NaN NaN 106254.3 NaN 5123 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7494 41.091 NaN 68819 35 0 7385.6 0.261 + 28958 TYAKQYEEF 9 34 589.7717092005471 1177.528865467894 2 589.7713623046875 MULTI HCD FTMS 0 0 0 7490 32984.06640625 1 0 0 4 Unmodified _TYAKQYEEF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 23.789781309258295 0.1548179064208189 2 [YT]A 3 6 32.76 0 0 2.7821 0 0 0 839.3554781549436 839.3554781549436 2.314309196763702 0 0 0 0 0.3807196863200844 2 0 0 + [YT]A 2.7821 + + 13 + NaN NaN 95097.8 NaN 5124 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7495 41.094 NaN 54063 35 0 10628 0.261 + -1 MEFLKWQMF 9 18 638.2998448238853 NaN 0 638.3201293945312 PEAK HCD FTMS 0 0 0 7490 7927.70556640625 1 0 0 5 Oxidation (M) _MEFLKWQM(Oxidation (M))F_ REV__GRK7|p.L176M|1|0.15|ENSG00000114124|chr3:141778810-141778810|C/A|missense_variant 1.6526216038709556 0.28723846860855273 2 E 1 -1 6.9897 0 0 0.54839 0 0 670.2872984350769 472.22971521549067 1142.5170136505676 0 0 0 0 0 0 0 0 0 E 0.54839 + + 2 + NaN NaN 92044.8 NaN 5125 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7496 41.098 NaN 60507 35 0 6422.6 0.264 + 14553 LFHAYGLPRF 10 39 407.55743365625244 1219.6504715689573 3 407.55706787109375 MULTI HCD FTMS 0 0 0 7490 12791.47265625 0.01776029627573955 54 -1.3919715881347656 6 Unmodified _LFHAYGLPRF_ ENST00000360284.7_1_12:52448627-52448831:+|nuORF 3.944395688203298 0.4544253912184634 2 {M(Oxidation (M))|F} 1 9 16.99 0 0 1.393 0 0 1054.5727718392682 0 1054.5727718392682 0 16.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.393 + + 5 + NaN NaN 101192.3 NaN 5126 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7497 41.101 NaN 51499 35 0 7510.1 0.261 -1 MWMEAWCL 8 50 563.7305003103672 NaN 0 563.73046875 PEAK HCD FTMS 0 0 0 7490 10283.6953125 0.7336755595314733 2 -0.05957794189453125 7 Carbamidomethyl (C) _MWMEAWC(Carbamidomethyl (C))L_ ENST00000550187.5_1_12:95365373-95387997:-|nuORF 2.8892196856762586 0.38822285293237185 2 R 1 -1 3.4949 0 0 0.31053 0 0 678.2287485681969 288.10288416080317 966.3316327290001 0 0 0 0 0 0 0 0 0 R 0.31053 - 3 + NaN NaN 85194.7 NaN 5127 2368 7490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7499 41.106 NaN 211980 35 0 23821 0.327 + 26070 SPFKADIEM 9 68 527.2494942970453 1052.4844356608905 2 527.249755859375 MULTI HCD FTMS 0 0 0 7498 85143.078125 0.658361490695762 -2 0.056232452392578125 1 Oxidation (M) _SPFKADIEM(Oxidation (M))_ ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 61.08992128646608 0.016056751534446034 2 SP{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F} 9 0 + 90.989 0 0 8.6452 8.6452 94.17 0 0 0 83.99948967441772 7.147642715192504 7.147642715192504 11.281446971601312 0 2.594187677400525 1.3979400086720375 0.8494850021680094 0 + + SP{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}{[NV]|[RG]}T{I|L}E{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}{[DA]|[EG]}K{I|L}E{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}[{I|L}V]{[QS]|[NT]}E{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}[{I|L}V]G{[SA]|[TG]}E{M(Oxidation (M))|F};S{[CA]|SS}VVW{I|L}E{M(Oxidation (M))|F};S{[{M(Oxidation (M))|F}D]|MM}[PA]K{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PS]{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}K{[QN]|[E{I|L}]|[KN]}A 8.6452;7.5733;7.212;6.2584;5.6948;5.4087;4.9762;3.7104;2.9771;2.5092 +;-;-;+;-;-;-;-;-;- + 577 + NaN NaN 113077.6 NaN 5128 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7500 41.111 NaN 253350 35 0 53750 0.263 + 25010 RYVRKFVLM 9 46 404.5741841413624 1210.7007230242873 3 404.908203125 MULTI HCD FTMS 0 0 0 7498 33334.90625 0.5901830993552185 5 -0.15616989135742188 2 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 11.640296217721598 0.25978676193971967 2 {I|L}M 2 7 30.969 0 0 2.5579 0 0 948.5663979283873 0 948.5663979283873 0 26.989700043360187 0 0 0 1 0 0 0 + {I|L}M 2.5579 + + 14 + NaN NaN 122575.6 NaN 5129 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7501 41.114 NaN 76041 35 0 8830 0.261 + 11920 KFIDTTSKF 9 34 543.7950986694144 1085.5756444056287 2 543.7947998046875 MULTI HCD FTMS 0 0 0 7498 40854.01171875 0.004896636780588689 68 -1.7474784851074219 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 28.233623360808718 0.11935903763491834 2 K{M(Oxidation (M))|F}{I|L}DG 5 5 46.938 0 0 4.3238 0 0 0 522.2586763971311 522.2586763971311 20.969100130080562 0 0 0 0 1 0 0.5 0 K{M(Oxidation (M))|F}{I|L}DG 4.3238 - 22 + NaN NaN 99386.5 NaN 5130 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7502 41.118 NaN 107560 35 0 12816 0.261 + 22368 QPQETSPEL 9 41 514.7487811009582 1027.4830092687164 2 514.7486572265625 MULTI HCD FTMS 0 0 0 7498 18538.00390625 0.5023868974757798 1 -0.033115386962890625 4 Unmodified _QPQETSPEL_ ENSG00000135148|ENST00000412615|TRAFD1 17.11289562659939 0.2125047172822487 2 A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[EP]{I|L} 7 4 36.215 0 0 3.5246 0 0 278.1298084943375 0 278.1298084943375 0 25.245681914907365 0 0 0 1.4247425010840047 0 0.7742275032520141 0 A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[EP]{I|L} 3.5246 - 25 NaN NaN 99819.1 NaN 5131 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7503 41.121 NaN 60096 35 0 18391 0.261 + -1 MHLHTMMAQL 10 21 630.780067142796 1259.545581352392 2 630.7803344726562 MULTI HCD FTMS 0 0 0 7498 41959.71484375 1 0 0 5 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 2.9952420565917617 0.4594494122822477 2 AQ{I|L} 3 -1 26.198 0 0 2.0799 0 0 929.3517450857591 0 929.3517450857591 0 26.197887582883936 0 0 0 0 0 0 0 AQ{I|L} 2.0799 + + 5 NaN NaN 94923.1 NaN 5132 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7504 41.124 NaN 59017 35 0 7449.7 0.264 -1 MPSPVSPKL 9 34 486.2648599756756 NaN 0 486.2641906738281 PEAK HCD FTMS 0 0 0 7498 30510.1953125 0.6793497712700979 13 -0.35654449462890625 6 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ ENSG00000072364|ENST00000265343|AFF4 13.042465956692817 0.23204487237355156 2 S 1 -1 13.979 0 0 1.4404 0 0 356.2422310824075 524.2168673150999 880.4590983975074 0 0 0 0 0 0.8494850021680094 0 0 0 S 1.4404 + + 4 + NaN NaN 92151.7 NaN 5133 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7505 41.128 NaN 49519 35 0 5173.1 0.261 -1 MPSSREDFL 9 37 549.2503200970956 NaN 0 549.2498168945312 PEAK HCD FTMS 0 0 0 7498 21512.0546875 0.5074399093459444 5 -0.15616989135742188 7 Oxidation (M) _M(Oxidation (M))PSSREDFL_ ENSG00000171940|ENST00000371471|ZNF217 5.731851221503515 0.26747109115447115 2 S 1 -1 10.485 0 0 0.9562 0 0 244.08900581743484 762.3415621393186 1006.4305679567535 0 0 0 0 0 0 0 0.5 0 S 0.9562 + + 3 + NaN NaN 89059.3 NaN 5134 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7506 41.131 NaN 114540 35 0 35620 0.261 + 19449 NPSRTPAVI 9 31 477.77174119500324 953.5289294568065 2 477.7719421386719 MULTI HCD FTMS 0 0 0 7498 21033.28515625 0.3590661874868339 -2 0.056232452392578125 8 Unmodified _NPSRTPAVI_ CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1 12.240655878213236 0.2545997876781172 2 AV{I|L} 3 6 31.198 0 0 3.2718 0 0 652.3275624005875 0 652.3275624005875 0 31.197887582883936 0 0 0 0.5 0 0 0 + AV{I|L} 3.2718 + + 8 NaN NaN 106193.1 NaN 5135 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7507 41.134 NaN 35566 35 0 7987.2 0.261 -1 HMVSDEYEQL 10 12 633.7689374559975 1265.523321978795 2 633.7689819335938 MULTI HCD FTMS 0 0 0 7498 16678.08984375 0.6982318976670115 -3 0.076019287109375 9 Oxidation (M) _HM(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 5.296884461304476 0.4472664531305844 2 YEQ{I|L} 4 -1 31.938 0 0 2.5237 0 0 714.2628377778849 0 714.2628377778849 0 31.938200260161125 0 0 0 0 0 0 0 YEQ{I|L} 2.5237 + + 8 NaN NaN 99752.9 NaN 5136 2369 7498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7509 41.139 NaN 230150 35 0 37650 0.327 + 26043 SPEPGTSEL 9 52 458.7164670695972 915.4183812059944 2 458.7162780761719 MULTI HCD FTMS 0 0 0 7508 86589.75 0.8571185304146135 1 -0.02639007568359375 1 Unmodified _SPEPGTSEL_ ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B 30.636539890814138 0.10832830463492794 2 [Y{I|L}]YESE 6 7 46.916 0 0 5.1251 0 0 0 128.07219031897958 128.07219031897958 32.3122157770505 0 0 0 0 0.805462187404089 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]YESE 5.1251 - 41 NaN NaN 136153.8 NaN 5137 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7510 41.144 NaN 96109 35 0 24906 0.261 -1 HPQFVTDVM 9 42 545.2551697548284 1088.4957865764568 2 545.2550659179688 MULTI HCD FTMS 0 0 0 7508 41444.94921875 0.7637346389734971 1 -0.02639007568359375 2 Oxidation (M) _HPQFVTDVM(Oxidation (M))_ ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 32.78568957990786 0.09846250359632436 2 TDV{M(Oxidation (M))|F} 4 -1 56.186 0 0 5.1618 0 0 608.3078726133693 0 608.3078726133693 0 50.70107520596089 0 0 0 2 0 0.4247425010840047 0 TDV{M(Oxidation (M))|F} 5.1618 + + 27 + NaN NaN 107152.9 NaN 5138 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7511 41.147 NaN 56600 35 0 19339 0.261 + -1 YHDGCSSGS 9 26 485.1721080994778 968.3296632657556 2 485.17205810546875 MULTI HCD FTMS 0 0 0 7508 17262.48046875 0.47776790715429923 1 -0.02639007568359375 3 Carbamidomethyl (C) _YHDGC(Carbamidomethyl (C))SSGS_ REV__ENST00000433076.6_1_6:30313138-30313281:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93628.8 NaN 5139 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7512 41.151 NaN 94768 35 0 14095 0.261 -1 RYQQWMERF 9 42 453.88003143201183 1358.6182648962356 3 453.8802185058594 MULTI HCD FTMS 0 0 0 7508 54105.19140625 0.09243447535975621 -16 0.39646148681640625 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 16.565877749689598 0.21723083036893404 2 W 1 -1 14.732 0 0 1.0843 0 0 597.2585983715128 572.2590808877161 1169.5176792592288 0 0 0 0 0 0.9247425010840047 0 0 0 W 1.0843 + + 21 + NaN NaN 100341.3 NaN 5140 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7513 41.154 NaN 53106 35 0 11624 0.261 + 8614 HDMLETQQL 9 24 557.7629992751836 1113.511445617167 2 557.7628173828125 MULTI HCD FTMS 0 0 0 7508 20672.228515625 0.5441351673624013 5 -0.15277099609375 5 Unmodified _HDMLETQQL_ REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant;REV__ENSG00000118412|ENST00000551025|CASP8AP2;REV__ENST00000237177.10_1_6:90556308-90583533:+|nuORF;REV__nc|ENSG00000118412|Q9UKL3|CASP8AP2 10.823927491677226 0.26684000660059787 2 Q{I|L} 2 -1 20.969 0 0 1.8832 0 0 854.3569182989902 0 854.3569182989902 0 13.979400086720375 0 0 0 0 0 0 0 Q{I|L} 1.8832 + + 5 NaN NaN 102675 NaN 5141 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7514 41.157 NaN 45586 35 0 5130.6 0.262 + 20614 PESWGFLC 8 32 469.7077143565143 937.4008757798287 2 469.7073669433594 MULTI HCD FTMS 0 0 0 7508 24125.365234375 1 0 0 6 Unmodified _PESWGFLC_ ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant 5.760428011301431 0.5334459684533844 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 89793.1 NaN 5142 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7515 41.161 NaN 14726 35 0 4713 0.261 + 34001 YLWYGKVGWL 10 14 642.842529296875 NaN 0 642.842529296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YLWYGKVGWL_ ENST00000548843.1_1_12:58200052-58208006:-|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90927.9 NaN 5143 2370 7508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7517 41.166 NaN 1003600 35 0 74586 0.327 + 22834 QYLRRLHYF 9 70 432.5715107453068 1294.6927028361204 3 432.57135009765625 MULTI HCD FTMS 0 0 0 7516 371500.28125 0.5557775245945862 4 -0.12638092041015625 1 Unmodified _QYLRRLHYF_ ENSG00000183856|ENST00000361170|IQGAP3 20.41453444215458 0.18397929046831515 2 Y{M(Oxidation (M))|F} 2 7 29.024 0 0 2.2417 0 0 966.5501372309486 0 966.5501372309486 0 8.846434334517141 0 0 0 0.805462187404089 0 0 0 + Y{M(Oxidation (M))|F} 2.2417 + + 33 NaN NaN 231448.7 NaN 5144 2371 7516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7518 41.17 NaN 141870 35 0 16485 0.261 + 5787 FPATGCQKL 9 48 482.74947809706674 963.4844032609335 2 482.7492370605469 MULTI HCD FTMS 0 0 0 7516 107448.2265625 1 0 0 2 Unmodified _FPATGCQKL_ ENSG00000137154|ENST00000380394|RPS6 82.5293158979368 0.005033931517079822 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATC(Carbamidomethyl (C))QK{I|L} 8 1 + 81.324 0 0 8.4406 8.4406 93.437 0 0 0 13.800018997402859 64.87002527416834 13.800018997402859 9.262137858390815 0 1.8494850021680094 2 1.1505149978319906 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATC(Carbamidomethyl (C))QK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ATC(Carbamidomethyl (C))[AG]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[CG]QK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]TAPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[R{M(Oxidation (M))|F}]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT[CG][AG]K{I|L};{M(Oxidation (M))|F}PATC(Carbamidomethyl (C))QK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{[RE]|[WV]}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AT{[RE]|[WV]}M{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PG][H{I|L}]APE 8.4406;7.4793;7.4793;7.4404;7.2061;6.5235;6.2966;6.0814;5.8987;5.8318 -;-;+;-;-;-;-;-;-;- + 118 NaN NaN 107962.7 NaN 5145 2371 7516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7519 41.174 NaN 153770 35 0 48190 0.261 -1 LRKMKWEQ 8 34 567.8077609623211 1133.6009689914422 2 567.807373046875 MULTI HCD FTMS 0 0 0 7516 39097.1171875 0.6959303539955672 2 -0.060237884521484375 3 Oxidation (M) _LRKM(Oxidation (M))KWEQ_ ENSG00000133424|ENST00000397394|LARGE1;nc|ENSG00000133424|O95461-2|LARGE1 4.75600775471527 0.5349361699807423 2 {I|L} 1 -1 6.9897 0 0 0.61659 0 0 63.99851608002957 953.4952044084939 1017.4937204885235 0 0 0 0 0 0 0 0 0 {I|L} 0.61659 + + 1 + NaN NaN 106059.8 NaN 5146 2371 7516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7520 41.177 NaN 160290 35 0 39434 0.261 -1 0 39 538.1608788264049 537.1536023598048 1 538.1610107421875 MULTI HCD FTMS 0 0 0 7516 46639.375 0.5217645904628141 644 -16.219863891601562 4 NaN NaN 2 {[TV]|[{I|L}S]}V 3 -1 17.42 0 0 3.2431 0 0 0 234.9471258795892 234.9471258795892 17.420299789533406 0 0 0 0 0 1.5228787452803376 0 0 {[TV]|[{I|L}S]}V 3.2431 - 4 NaN NaN 112897.7 NaN 5147 2371 7516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7521 41.18 NaN 127410 35 0 26177 0.261 + 16163 LPVDKAQEL 9 50 506.78706141220545 1011.5595698912109 2 506.787109375 MULTI HCD FTMS 0 0 0 7516 43716.26171875 0.5980191678403834 -2 0.059505462646484375 5 Unmodified _LPVDKAQEL_ ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF;nc|ENSG00000196497|Q8TEX9-2|IPO4 22.65808497894818 0.16459551161911185 2 {I|L}PVD{I|L} 5 4 63.315 0 0 6.2592 0 0 0 471.20881067447505 471.20881067447505 49.3360688456422 0 0 0 0 0.805462187404089 1.6989700043360187 0.3807196863200844 0 {I|L}PVD{I|L} 6.2592 - 33 + NaN NaN 113321.9 NaN 5148 2371 7516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7522 41.184 NaN 89779 35 0 18072 0.261 + -1 MHLHTMMAQL 10 41 420.8558846698419 1259.5458246097257 3 420.8553161621094 MULTI HCD FTMS 0 0 0 7516 22379.830078125 0.40291159651823927 8 -0.23497390747070312 6 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 6.1918466704503565 0.44252927588099017 2 {I|L} 1 -1 18.979 0 0 1.5068 0 0 1128.451111330232 0 1128.451111330232 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L} 1.5068 + + 2 + NaN NaN 96569.2 NaN 5149 2371 7516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7524 41.189 NaN 1154700 35 0 180940 0.327 + 2314 DMHTEVTTL 9 85 531.742144989856 1061.469737046512 2 531.741943359375 MULTI HCD FTMS 0 0 0 7523 480445.5 0.9071471787862084 2 -0.0735931396484375 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 46.020951573049366 0.037705236580089195 2 VTT{I|L} 4 5 51.855 0 0 4.8852 0 0 629.2106828335669 0 629.2106828335669 0 29.90540356723386 0 0 0 1.3807196863200843 0 0.8494850021680094 0 + VTT{I|L} 4.8852 + + 671 NaN NaN 280964.2 NaN 5150 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7525 41.197 NaN 201720 35 0 49906 0.273 + 35411 YYEEQHPEL 9 30 604.2670384843465 1206.5195240354929 2 604.2667846679688 MULTI HCD FTMS 0 0 0 7523 103540.6328125 0.048338387565849794 15 -0.375274658203125 2 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 63.227496030279354 0.01306643085373406 2 YYEEQH 6 3 88.493 0 0 7.3345 0 0 0 354.1665438287719 354.1665438287719 83.00820653692661 0 0 0 0 2.1237125054200234 2 0.7614393726401688 0 + YYEEQH 7.3345 + + 73 + NaN NaN 124819.3 NaN 5151 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7526 41.201 NaN 205910 35 0 20837 0.262 + 22369 QPQETSPEL 9 59 514.7487811009582 1027.4830092687164 2 515.267333984375 MULTI HCD FTMS 0 0 0 7523 9044.197265625 0.3942839320384299 4 -0.13965225219726562 3 Unmodified _QPQETSPEL_ ENSG00000135148|ENST00000412615|TRAFD1 8.155526934196011 0.2891920862272901 2 VQSS{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L} 8 7 35.218 0 0 3.4276 0 0 130.06173167650962 0 130.06173167650962 0 23.892522010455792 0 0 0 1.110924374808178 0 0.6307196863200843 0 VQSS{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L} 3.4276 - 138 + NaN NaN 133881.7 NaN 5152 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7527 41.204 NaN 74291 35 0 17317 0.261 + 14210 LASLTSIGAL 10 35 473.2845165990483 944.5544802648966 2 473.2838134765625 MULTI HCD FTMS 0 0 0 7523 30010.625 0.01930277649316827 19 -0.4635353088378906 4 Unmodified _LASLTSIGAL_ REV__tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1 14.838274106304384 0.3723198072575719 2 A{I|L} 2 -1 20.573 0 0 2.1781 0 0 742.422655174025 0 742.422655174025 0 17.47425010840047 0 0 0 0.5 0 0 0 A{I|L} 2.1781 + + 7 NaN NaN 97783.5 NaN 5153 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7528 41.208 NaN 90675 35 0 9550.8 0.261 -1 IMVPNMMI 8 40 498.7320134201093 995.4494739070186 2 499.24462890625 MULTI HCD FTMS 0 0 0 7523 3802.56787109375 0.22998268616419332 -1 0.0230712890625 5 3 Oxidation (M) _IM(Oxidation (M))VPNM(Oxidation (M))M(Oxidation (M))I_ ENSG00000174946|ENST00000309180|GPR171 5.760428011301431 0.5334459684533844 2 YP 2 -1 40.969 0 0 4.1156 0 0 0 732.3118871193674 732.3118871193674 18.57332496431269 0 0 0 0 0 2 0 0 YP 4.1156 - 7 + NaN NaN 110915.5 NaN 5154 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7529 41.211 NaN 41030 35 0 6026.6 0.261 + 132 AEDLNTRVAY 10 26 576.2880427528996 1150.5615325725992 2 576.2867431640625 MULTI HCD FTMS 0 0 0 7523 22657.26953125 0.9883217152539826 -1 0.0230712890625 6 Unmodified _AEDLNTRVAY_ ENSG00000134970|ENST00000456936|TMED7;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2 7.101721422024254 0.4377131641736035 2 AY 2 8 25.969 0 0 2.2571 0 0 898.4476226645247 0 898.4476226645247 0 21.365006360318688 0 0 0 0.5 0 0 0 + AY 2.2571 + + 10 NaN NaN 90225.6 NaN 5155 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7530 41.214 NaN 56379 35 0 6737.1 0.261 -1 0 37 564.1310112682453 2815.618674008226 5 564.3313598632812 MULTI HCD FTMS 0 0 0 7523 8602.748046875 0.2954631790180289 -1 0.0230712890625 7 NaN NaN 2 NHV 3 -1 8.1876 0 0 0.29079 0 0 2075.247227330295 387.16868005924067 2462.4159073895357 0 0 0 0 0 0 0 0 0 NHV 0.29079 - 35 + NaN NaN 102528.2 NaN 5156 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7531 41.218 NaN 17367 35 0 4608.7 0.261 -1 FLMCTRCCM 9 14 619.2354087998876 NaN 0 619.2347412109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C),Oxidation (M) _FLM(Oxidation (M))C(Carbamidomethyl (C))TRC(Carbamidomethyl (C))CM_ ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;nc|ENSG00000114374|O00507-2|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90490.6 NaN 5157 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7532 41.221 NaN 19364 35 0 4758.4 0.261 + 14743 LHSQAKATHRF 11 19 648.3542714389004 1294.6939899446006 2 648.3524780273438 MULTI HCD FTMS 0 0 0 7523 13662.2763671875 0.6556825942629458 9 -0.25098419189453125 9 Unmodified _LHSQAKATHRF_ REV__ENST00000341287.8_1_2:209030465-209035714:-|nuORF 0.9622753412299311 0.4147004537482263 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86601.8 NaN 5158 2372 7523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7534 41.226 NaN 1236900 35 0 108840 0.327 + 18934 NAFKEITTM 9 88 535.7627051998916 1069.510857466583 2 535.762451171875 MULTI HCD FTMS 0 0 0 7533 521642.8125 0.9948860360366266 1 -0.036426544189453125 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 155.95374464489888 2.532374632554729E-06 2 NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 118.19 0 0 11.051 11.051 96.574 0 0 0 14.363044005075736 14.363044005075736 14.363044005075736 14.363044005075736 0 3.079689690656103 1.5228787452803376 1.6861818737241734 0 + + NA{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NKE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}GGKE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}KNE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}KGGE{I|L}TT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D[KQ]{I|L}TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}V]E{I|L}H[DP] 11.051;9.7079;7.2963;6.179;5.8099;4.9489;4.8068;2.3955;1.7622 +;+;-;-;-;-;-;-;- + 726 + NaN NaN 273669.7 NaN 5159 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7535 41.23 NaN 241680 35 0 57306 0.261 + 24901 RYQTQPVTL 9 31 553.3035279126148 1104.5925028920294 2 553.3032836914062 MULTI HCD FTMS 0 0 0 7533 85675.1796875 0.15889724465476146 6 -0.17473602294921875 2 Unmodified _RYQTQPVTL_ ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-3|SVIL;nc|ENSG00000197321|O95425-4|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant 22.736283301280096 0.1639198954644489 2 T{I|L} 2 7 30.217 0 0 2.7355 0 0 872.4496804057562 0 872.4496804057562 0 20.612431371158735 0 0 0 0.5 0 0.4247425010840047 0 + T{I|L} 2.7355 + + 20 NaN NaN 116935.3 NaN 5160 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7536 41.234 NaN 187230 35 0 23406 0.261 + 12940 KYHGYPYSF 9 41 581.2717889503572 1160.5290249675143 2 581.271484375 MULTI HCD FTMS 0 0 0 7533 84222.640625 0.5813655181399233 2 -0.06614303588867188 3 Unmodified _KYHGYPYSF_ ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3 66.45667989310934 0.010234776021261575 2 [YK]HGYPYS{M(Oxidation (M))|F} 9 0 + 70.155 0 0 6.0451 6.0451 92.353 0 0 0 4.503187623076954 55.88603713464675 4.503187623076954 31.025684359364405 0 2.305462187404089 0 0.4247425010840047 0 + + [YK]HGYPYS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PG]PYS{M(Oxidation (M))|F};[YK]HG[C(Carbamidomethyl (C))S][PA]{[QN]|[E{I|L}]|[KN]};[YK]H[C(Carbamidomethyl (C))S]G[PA]{[QN]|[E{I|L}]|[KN]};[YK]HG[CS]G[PA]{[QN]|[E{I|L}]|[KN]};[YK]H[C(Carbamidomethyl (C))S][QP]{[QN]|[E{I|L}]|[KN]};[YK]HG[CS][QP]{[QN]|[E{I|L}]|[KN]};[YK]H[HT]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]};[YK]HG[EP]{[QS]|[NT]}{[ES]|[DT]|[{I|L}C]} 6.0451;3.3717;1.5037;1.3604;1.1878;0.86234;0.68602;0.61779;0.58098 +;-;-;-;-;-;-;-;- + 194 NaN NaN 115090 NaN 5161 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7537 41.237 NaN 311820 35 0 72898 0.261 + 21825 QARYEEEVL 9 47 568.7825879955622 1135.5506230579242 2 568.7823486328125 MULTI HCD FTMS 0 0 0 7533 110066.15625 0.6984509459610867 -1 0.037166595458984375 4 Unmodified _QARYEEEVL_ ENSG00000277586|ENST00000610854|NEFL 29.081581746732265 0.1154664336125038 2 APEEV{I|L} 6 4 54.157 0 0 4.7692 0 0 479.22459609199376 0 479.22459609199376 0 43.187587626244124 0 0 0 0.5 0 0.8494850021680094 0 APEEV{I|L} 4.7692 - 48 NaN NaN 142364.2 NaN 5162 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7538 41.241 NaN 249790 35 0 59946 0.264 + 34179 YPDGRKEITF 10 51 409.2117775457025 1224.6135032373074 3 409.2113342285156 MULTI HCD FTMS 0 0 0 7533 64887.89453125 0.7894783092970828 -1 0.037166595458984375 5 Unmodified _YPDGRKEITF_ ENSG00000151849|ENST00000381884|CENPJ 14.218169984304629 0.37812005199054677 2 YPD 3 7 44.441 0 0 3.629 0 0 0 846.4465332375686 846.4465332375686 31.342415154464604 0 0 0 0 0.6694451763165201 1.154901959985743 0 0 + YPD 3.629 + + 13 + NaN NaN 126421.1 NaN 5163 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7539 41.244 NaN 242260 35 0 50490 0.261 -1 AYVHMVTHF 9 57 560.7657330135318 1119.5169130938634 2 560.7652587890625 MULTI HCD FTMS 0 0 0 7533 35687.57421875 0.031693306426456694 165 -4.376213073730469 6 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 14.838274106304384 0.23215694253501695 2 [YV]MQQH[PA]{M(Oxidation (M))|F} 9 -1 + 37.113 0 0 3.3151 3.3151 82.32 0 0 0 14.436682698265336 6.522949032151011 6.522949032151011 4.771212547196626 0 0 2 0 0 [YV]MQQH[PA]{M(Oxidation (M))|F};[YV]MQQ[PA]H{M(Oxidation (M))|F};[YV][HS]YHV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]WHV{[ES]|[DT]|[{I|L}C]} 3.3151;2.8889;2.7151;2.0255 -;-;-;- 121 NaN NaN 119852.6 NaN 5164 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7540 41.247 NaN 44820 35 0 7735.9 0.261 + 28857 TVNTSLNVYR 10 28 583.8115852259883 1165.6086175187766 2 583.8110961914062 MULTI HCD FTMS 0 0 0 7533 30532.81640625 0.6607631879782436 5 -0.14850997924804688 7 Unmodified _TVNTSLNVYR_ ENSG00000113845|ENST00000494664|TIMMDC1 13.614867670302875 0.3837631382804675 2 {[TV]|[{I|L}S]}NTS{I|L}NV[YR] 10 0 + 43.645 0 0 3.7444 3.7444 84.492 0 0 0 43.64516253185087 7.269987279362624 7.269987279362624 9.164539485499247 0 0 0 0 0 + + {[TV]|[{I|L}S]}NTS{I|L}NV[YR];{[TV]|[{I|L}S]}NTS{I|L}GGV[YR];{[TV]|[{I|L}S]}GGTS{I|L}NV[YR];{[TV]|[{I|L}S]}GGTS{I|L}GGV[YR] 3.7444;2.9582;2.9582;2.175 +;-;-;- + 54 + NaN NaN 94555.4 NaN 5165 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7541 41.251 NaN 62006 35 0 6778.3 0.261 + -1 MLCSLIMP 8 32 498.7320134201093 995.4494739070186 2 498.7320861816406 MULTI HCD FTMS 0 0 0 7533 13676.3154296875 0.6365078825449758 1 -0.036426544189453125 8 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))LC(Carbamidomethyl (C))SLIM(Oxidation (M))P_ REV__ENSG00000090863|ENST00000422840|GLG1;REV__nc|ENSG00000090863|Q92896-2|GLG1;REV__nc|ENSG00000090863|Q92896-3|GLG1 10.183394434864962 0.5188676124868831 2 YP 2 -1 45.217 0 0 4.5423 0 0 0 732.3102511041624 732.3102511041624 39.73197507588033 0 0 0 0 0.4247425010840047 2 0 0 YP 4.5423 - 6 + NaN NaN 115154.5 NaN 5166 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7542 41.254 NaN 13625 35 0 4760.7 0.261 + 23327 RIYYDYNYS 9 12 628.782414044912 1255.550275156624 2 628.7822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _RIYYDYNYS_ REV__ENSG00000143196|ENST00000367817|DPT 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87324.2 NaN 5167 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7543 41.257 NaN 71036 35 0 6529 0.264 + 25852 SMAFFRCL 8 40 487.7327431263528 973.4509333195056 2 487.73199462890625 MULTI HCD FTMS 0 0 0 7533 5722.724609375 0.03038648198101069 22 -0.54144287109375 10 Unmodified _SMAFFRCL_ REV__ENSG00000004139|ENST00000585482|SARM1 4.75600775471527 0.5349361699807423 2 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}A 4 -1 27.932 0 0 2.8694 0 0 0 534.2690523736936 534.2690523736936 27.931825014007217 0 0 0 0 0 1.5228787452803376 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}A 2.8694 - 3 + NaN NaN 94248 NaN 5168 2373 7533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7545 41.262 NaN 2886900 35 0 287890 0.327 + 21868 QAVRQDPLL 9 110 520.2980537896103 1038.5815546460205 2 520.2979125976562 MULTI HCD FTMS 0 0 0 7544 1697875.5 0.43124973806896183 -3 0.0966644287109375 1 Unmodified _QAVRQDPLL_ ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17 121.5340881639634 0.001118397630175091 2 [QA]VRDQP{I|L}{I|L} 9 2 + 72.736 0 0 7.0034 7.0034 90.265 0 0 0 2.6765146976338627 41.57612637904762 2.6765146976338627 9.208187539523749 0 1.9049471895720984 0.8239087409443188 1.079689690656103 1.860924374808178 [QA]VRDQP{I|L}{I|L};[QA]VRD[AG]P{I|L}{I|L};QAVRQDP{I|L}{I|L};[QA]VRDQ{I|L}P{I|L};[QA]VRDPQ{I|L}{I|L};QAVRQD{I|L}P{I|L};[QA]VRDPAG{I|L}{I|L};QAVR[AG]DP{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}RVAQP{I|L}{I|L};[QA]VRD[AG]{I|L}P{I|L} 7.0034;6.1168;5.6285;5.5333;5.2214;5.0241;4.8476;4.7418;4.6916;4.6467 -;-;+;-;-;-;-;-;-;- + 1128 NaN NaN 531350.9 NaN 5169 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7546 41.267 NaN 203230 35 0 16383 0.261 + 26071 SPFKADIEM 9 69 527.2494942970453 1052.4844356608905 2 527.249267578125 MULTI HCD FTMS 0 0 0 7544 60677.359375 0.4691824356051547 3 -0.08901214599609375 2 Oxidation (M) _SPFKADIEM(Oxidation (M))_ ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 45.739877483867886 0.03899552410870734 2 [YV][TP]{[QG]|[NA]}{I|L}E{M(Oxidation (M))|F} 9 5 + 45.683 0 0 4.3405 4.3405 82.075 0 0 0 1.5874840992032802 1.5874840992032802 1.5874840992032802 1.5874840992032802 0 1.610924374808178 1.3979400086720375 0.3252574989159953 0 [YV][TP]{[QG]|[NA]}{I|L}E{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}K{[DA]|[EG]}{I|L}E{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}{[NV]|[RG]}T{I|L}E{M(Oxidation (M))|F};[PS][Y{I|L}]{[QG]|[NA]}{I|L}E{M(Oxidation (M))|F};[YV][TP]KD[PS]{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}KWDHH;[PS][Y{I|L}]KD[PS]{M(Oxidation (M))|F};[WY][EP]RR{M(Oxidation (M))|F};[YV][TP]{[WN]|[YH]}HH;[YV]D{[ES]|[DT]|[{I|L}C]}VV{[QD]|[EN]|[WG]|[KD]|[RS]} 4.3405;4.1897;3.6727;3.1285;2.8153;1.4622;1.4373;1.4322;1.1446;0.94172 -;+;-;-;-;-;-;-;-;- + 358 NaN NaN 112015.8 NaN 5170 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7547 41.27 NaN 157770 35 0 39690 0.262 + 34894 YSFPGASC 8 52 416.169142891129 NaN 0 416.18121337890625 PEAK HCD FTMS 0 0 0 7544 2207.863037109375 0.874393762893416 1 -0.02971649169921875 3 Unmodified _YSFPGASC_ ENSG00000196498|ENST00000405201|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;ENST00000461081.2_1_12:124816664-124819403:-|nuORF;ENST00000474079.1_1_12:124818968-124819707:-|nuORF;nc|ENSG00000196498|Q9Y618-2|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2 9.347437153973935 0.38822285293237185 2 {M(Oxidation (M))|F}D 2 7 11.836 0 0 1.4255 0 0 433.1586155168299 132.0455721490844 565.2041876659143 0 0 0 0 0 0 0 0.3252574989159953 0 {M(Oxidation (M))|F}D 1.4255 - 7 + NaN NaN 102188.7 NaN 5171 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7548 41.274 NaN 152400 35 0 27409 0.261 + 25011 RYVRKFVLM 9 49 404.5741841413624 1210.7007230242873 3 404.57373046875 MULTI HCD FTMS 0 0 0 7544 57891.74609375 0.5957504360511274 7 -0.17739105224609375 4 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 4.3292370932331545 0.3181982124262546 2 {I|L}M 2 7 25.969 0 0 2.145 0 0 948.5653278472104 0 948.5653278472104 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}M 2.145 + + 2 NaN NaN 117289.7 NaN 5172 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7549 41.277 NaN 599880 35 0 139880 0.261 + 15124 LMKTLGTLLM 10 89 560.826996754403 1119.639440575606 2 560.8267211914062 MULTI HCD FTMS 0 0 0 7544 210702.765625 0.18125731146330992 -5 0.15616989135742188 5 Unmodified _LMKTLGTLLM_ RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant 27.628801355627647 0.2527626205058048 2 [YV]{I|L}DRVR 7 9 72.743 0 0 6.497 0 0 0 215.10340295963127 215.10340295963127 49.031512840088126 0 0 0 0 2.055462187404089 2 0.28872548999643577 1.3807196863200843 [YV]{I|L}DRVR 6.497 - 532 + NaN NaN 170267.3 NaN 5173 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7550 41.28 NaN 60126 35 0 21580 0.261 + -1 GCCCCCCCA 9 30 577.1263863912737 NaN 0 577.1256713867188 PEAK HCD FTMS 0 0 0 7544 23497.279296875 0.6470814548927378 507 -12.839851379394531 6 5 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CCA_ REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107667.5 NaN 5174 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7551 41.284 NaN 41807 35 0 3475.2 0.261 -1 TEMVECSL 8 32 492.7042973904869 983.3940418477738 2 492.7039489746094 MULTI HCD FTMS 0 0 0 7544 3281.136474609375 0.017557386579120836 70 -1.7758102416992188 7 Carbamidomethyl (C),Oxidation (M) _TEM(Oxidation (M))VEC(Carbamidomethyl (C))SL_ ENSG00000012779|ENST00000374391|ALOX5;ENST00000483623.2_1_10:45920415-45923886:+|nuORF;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104770 NaN 5175 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7552 41.287 NaN 39604 35 0 5617.9 0.261 + -1 KNKSMCWHII 10 23 638.3203842906942 1274.6262156481882 2 638.31884765625 MULTI HCD FTMS 0 0 0 7544 13612.6416015625 0.027874051757787503 19 -0.44901275634765625 8 Oxidation (M) _KNKSM(Oxidation (M))CWHII_ REV__ENST00000368468.3_1_6:119499216-119499336:-|nuORF 2.9952420565917617 0.4594494122822477 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94017.5 NaN 5176 2374 7544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7554 41.292 NaN 336630 35 0 43943 0.326 -1 RYQQWMERF 9 65 453.88003143201183 1358.6182648962356 3 453.87957763671875 MULTI HCD FTMS 0 0 0 7553 130367.921875 0.22272336811038965 -11 0.3014640808105469 1 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 37.07464296494664 0.07877380486334713 2 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 5 -1 39.157 0 0 2.8821 0 0 575.282161881119 0 575.282161881119 0 35.66183773464459 0 0 0 0.8494850021680094 0 0.3494850021680094 0 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 2.8821 + + 110 + NaN NaN 138567.5 NaN 5177 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7555 41.297 NaN 122420 35 0 15803 0.261 + 34630 YPQNPDHVL 9 43 541.7664566932856 1081.518360453371 2 541.76611328125 MULTI HCD FTMS 0 0 0 7553 69261.8828125 0.937798472657773 1 -0.036342620849609375 2 Unmodified _YPQNPDHVL_ ENSG00000126561|ENST00000590949|STAT5A;nc|ENSG00000126561|P42229-2|STAT5A 34.93206674587334 0.08860942999206235 2 YPQN{I|L} 5 4 46.503 0 0 4.2998 0 0 0 463.1843660943969 463.1843660943969 20.305168975722765 0 0 0 0 0.5 1.3979400086720375 0 0.4247425010840047 YPQN{I|L} 4.2998 - 71 + NaN NaN 112965.6 NaN 5178 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7556 41.3 NaN 362760 35 0 55446 0.261 + 15622 LPEEEQQRVL 10 50 620.8302435521206 1239.645934171041 2 620.8297119140625 MULTI HCD FTMS 0 0 0 7553 161205.375 0.18853444428891325 -6 0.18588638305664062 3 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 111.30893174071366 4.9566027960446945E-05 2 {I|L}PEEEQQRV{I|L} 10 0 + 109.66 0 0 8.8464 8.8464 92.502 0 0 0 89.47001166903766 8.379231027444405 8.379231027444405 9.164539485499262 0 3.2346368802282015 0 1.4559771852360797 0.6382104921644451 + + {I|L}PEEEQQRV{I|L};{I|L}PEEEQ[AG]RV{I|L};{I|L}PEEE[AG]QRV{I|L};{I|L}PEEE[AG][AG]RV{I|L};[{I|L}P]EEEQQRV{I|L};[EP]{I|L}EEQQRV{I|L};[EP]E{I|L}EQQRV{I|L};[{I|L}P]EEQEQRV{I|L};[{I|L}P]EEEQ[AG]RV{I|L};[{I|L}P]EEE[AG]QRV{I|L} 8.8464;8.1071;8.1071;7.3707;6.1434;6.0436;5.7823;5.4972;5.4041;5.4041 +;-;-;-;+;-;-;-;-;- + 1753 + NaN NaN 136397.6 NaN 5179 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7557 41.303 NaN 380740 35 0 87157 0.262 + 33732 YLDRVRSL 8 59 511.2927825947185 1020.571012256237 2 511.2924499511719 MULTI HCD FTMS 0 0 0 7553 86360.046875 0.3368022004157985 -4 0.12638092041015625 4 Unmodified _YLDRVRSL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF 27.628801355627647 0.38985241877747906 2 {I|L}YDRVR{[TV]|[{I|L}S]} 8 2 + 49.09 0 0 4.8101 4.8101 91.19 0 0 0 37.99803764475704 6.9112251007275916 6.9112251007275916 49.090475125574855 0 1.1989700043360187 2 0 0.4247425010840047 {I|L}YDRVR{[TV]|[{I|L}S]} 4.8101 - 91 + NaN NaN 139778.8 NaN 5180 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7558 41.307 NaN 124120 35 0 11004 0.261 + 32167 VYSQFFQSS 9 42 546.753810398082 1091.493067862964 2 546.7533569335938 MULTI HCD FTMS 0 0 0 7553 33792.98046875 0.7389083497724939 -3 0.10330963134765625 5 Unmodified _VYSQFFQSS_ REV__ENSG00000175216|ENST00000529230|CKAP5;REV__nc|ENSG00000175216|Q14008-2|CKAP5;REV__nc|ENSG00000175216|Q14008-3|CKAP5 4.3292370932331545 0.3181982124262546 2 {I|L}D 2 -1 4.9485 0 0 0.45337 0 0 261.98954110690767 598.3662813775999 860.3558224845076 0 0 0 0 0 0 0 0 0 {I|L}D 0.45337 - 10 + NaN NaN 105583.8 NaN 5181 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7559 41.31 NaN 111590 35 0 24698 0.261 + 14818 LITDADTCP 9 27 474.72064457637435 947.4267362195487 2 474.719970703125 MULTI HCD FTMS 0 0 0 7553 30509.50390625 0.9030232258340506 -1 0.02971649169921875 6 Unmodified _LITDADTCP_ ENST00000287701.14_1_8:28909738-28909819:+|nuORF 7.910154910731844 0.2910521888787154 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105580.8 NaN 5182 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7560 41.313 NaN 71479 35 0 15376 0.261 + 30990 VSDKTVVK 8 39 438.263548911049 874.512544888898 2 438.2629699707031 MULTI HCD FTMS 0 0 0 7553 42532.640625 0.5323848378939215 28 -0.6825218200683594 7 Unmodified _VSDKTVVK_ REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 0.6903765706972694 0.5409681170271811 2 {I|L} 1 -1 3.9794 0 0 0.45504 0 0 475.2941438652636 283.1168612115844 758.411005076848 0 0 0 0 0 0 0 0 0 {I|L} 0.45504 - 3 + NaN NaN 96479.1 NaN 5183 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7561 41.317 NaN 57406 35 0 6172.4 0.261 -1 NYIMKIHNF 9 33 598.2994908249652 1194.5844287167304 2 598.2994384765625 MULTI HCD FTMS 0 0 0 7553 32615.33984375 0.7628022135490301 -1 0.02971649169921875 8 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 30.636539890814138 0.10832830463492794 2 [YN]{I|L}DK 5 -1 38.684 0 0 3.2383 0 0 0 558.2684420221311 558.2684420221311 10.496812376923046 0 0 0 0 0.4247425010840047 2 0 0.3494850021680094 [YN]{I|L}DK 3.2383 - 27 + NaN NaN 93718.3 NaN 5184 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7562 41.32 NaN 70298 35 0 14851 0.262 + 8145 GPDPKAYQL 9 31 494.7583276345705 987.502102335941 2 494.75762939453125 MULTI HCD FTMS 0 0 0 7553 18269.048828125 0.3250670724841563 -6 0.18588638305664062 9 Unmodified _GPDPKAYQL_ ENSG00000185803|ENST00000643944|SLC52A2 5.731851221503515 0.3075653528928475 2 Q{I|L} 2 7 19.464 0 0 1.971 0 0 728.3500843732437 0 728.3500843732437 0 16.989700043360187 0 0 0 0 0 0 0 + Q{I|L} 1.971 + + 4 NaN NaN 117679.8 NaN 5185 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7563 41.323 NaN 20832 35 0 3956.7 0.261 + 34816 YREQIGDPLG 10 15 574.2905357366035 NaN 0 574.2900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _YREQIGDPLG_ REV__tr|U7SM38|U7SM38_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02037PE=4SV=1 1.3295316138638542 0.339046394236575 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.34707 0 0 591.8120152214507 404.6550692193969 996.4670844408477 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.34707 - 1 + NaN NaN 88763.8 NaN 5186 2375 7553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7565 41.328 NaN 558010 35 0 39583 0.327 + 22835 QYLRRLHYF 9 64 432.5715107453068 1294.6927028361204 3 432.57110595703125 MULTI HCD FTMS 0 0 0 7564 182265.21875 0.2726751962494396 9 -0.18963241577148438 1 Unmodified _QYLRRLHYF_ ENSG00000183856|ENST00000361170|IQGAP3 16.149105407346934 0.22083165093524068 2 Y{M(Oxidation (M))|F} 2 7 24.464 0 0 1.8896 0 0 966.5503661347518 0 966.5503661347518 0 9.859856381998782 0 0 0 0.3494850021680094 0 0 0 + Y{M(Oxidation (M))|F} 1.8896 + + 23 NaN NaN 168274.2 NaN 5187 2376 7564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7566 41.333 NaN 276790 35 0 64875 0.261 + 26192 SPQSNSPVL 9 46 464.74012308435397 927.465693235508 2 464.73980712890625 MULTI HCD FTMS 0 0 0 7564 114483.25 0.9209723889714264 -1 0.036342620849609375 2 Unmodified _SPQSNSPVL_ ENSG00000183624|ENST00000383463|HMCES 24.020572477871973 0.15282392193088168 2 ES[VP]{I|L} 5 5 34.855 0 0 3.7581 0 0 384.18806655097814 0 384.18806655097814 0 17.865115989973823 0 0 0 1.4247425010840047 0 0.2614393726401688 0 ES[VP]{I|L} 3.7581 - 39 NaN NaN 128195.5 NaN 5188 2376 7564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7567 41.336 NaN 334220 35 0 118120 0.261 + 19273 NLPDNTAVI 9 36 478.75597276160033 955.4973925900007 2 478.7557067871094 MULTI HCD FTMS 0 0 0 7564 147991.359375 0.24037138633865698 -5 0.16272354125976562 3 Unmodified _NLPDNTAVI_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 13.90604991867851 0.24021115267848145 2 V{I|L} 2 -1 25.969 0 0 2.7179 0 0 725.3340113324412 0 725.3340113324412 0 20.48455006504028 0 0 0 0.5 0 0 0 V{I|L} 2.7179 + + 5 NaN NaN 128141.8 NaN 5189 2376 7564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7568 41.34 NaN 46004 35 0 5734 0.261 -1 0 35 419.3162578408133 418.3089813742133 1 419.31512451171875 MULTI HCD FTMS 0 0 0 7564 61624.42578125 0.3791553054406121 584 -14.627815246582031 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 3.7017 0 0 253.23021352928987 0 253.23021352928987 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.7017 - 1 + NaN NaN 111508 NaN 5190 2376 7564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7569 41.343 NaN 83651 35 0 15500 0.261 + 16164 LPVDKAQEL 9 40 506.78706141220545 1011.5595698912109 2 506.7868957519531 MULTI HCD FTMS 0 0 0 7564 33737.12109375 0.46150892799603976 3 -0.0722503662109375 5 Unmodified _LPVDKAQEL_ ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF;nc|ENSG00000196497|Q8TEX9-2|IPO4 12.240655878213236 0.2545997876781172 2 {I|L}PV 3 6 46.198 0 0 4.567 0 0 0 699.3288057916624 699.3288057916624 46.197887582883936 0 0 0 0 0 2 0 0 + {I|L}PV 4.567 + + 8 + NaN NaN 94943.3 NaN 5191 2376 7564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7570 41.346 NaN 69321 35 0 6836.4 0.261 + 18515 MSHPFFLP 8 41 488.24264826459006 NaN 0 488.2424621582031 PEAK HCD FTMS 0 0 0 7564 5028.18212890625 0.22781577908987463 -2 0.06605911254882812 6 Unmodified _MSHPFFLP_ ENST00000455502.5_1_7:93540047-93540227:+|nuORF 5.760428011301431 0.38822285293237185 2 {M(Oxidation (M))|F}A 2 7 10.969 0 0 1.1256 0 0 219.07411729618644 534.2689913385374 753.3431086347239 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A 1.1256 - 4 + NaN NaN 97592.1 NaN 5192 2376 7564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7572 41.351 NaN 688440 35 0 112280 0.327 + 2315 DMHTEVTTL 9 67 531.742144989856 1061.469737046512 2 531.74169921875 MULTI HCD FTMS 0 0 0 7571 220834.9375 0.41696673302289994 7 -0.1470489501953125 1 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 54.773552608820026 0.024892918755467567 2 VTT{I|L} 4 5 51.102 0 0 4.8143 0 0 629.2115607440928 0 629.2115607440928 0 38.895840698003 0 0 0 1.305462187404089 0 0.8494850021680094 0 + VTT{I|L} 4.8143 + + 109 NaN NaN 204484.7 NaN 5193 2377 7571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7573 41.356 NaN 292680 35 0 39301 0.261 + 18302 MPEKEPSVL 9 57 515.2679596723347 1028.5213664114692 2 515.2677001953125 MULTI HCD FTMS 0 0 0 7571 166252.671875 1 0 0 2 Unmodified _MPEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 59.368380827593164 0.01846506874148156 2 MPE 3 6 47.989 0 0 4.6658 0 0 0 668.3639263105313 668.3639263105313 18.934625873455744 0 0 0 0 0.6989700043360187 1.154901959985743 0.3252574989159953 0 + MPE 4.6658 + + 105 + NaN NaN 126340.2 NaN 5194 2377 7571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7574 41.359 NaN 127860 35 0 32298 0.261 + 35412 YYEEQHPEL 9 26 604.2670384843465 1206.5195240354929 2 604.2664184570312 MULTI HCD FTMS 0 0 0 7571 70325.9140625 0.03283195396373289 20 -0.46535491943359375 3 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 63.227496030279354 0.01306643085373406 2 YYEEQH 6 3 88.18 0 0 7.3087 0 0 0 354.16681848697505 354.16681848697505 88.18040976044614 0 0 0 0 2.1237125054200234 2 0.3807196863200844 0.3494850021680094 + YYEEQH 7.3087 + + 54 + NaN NaN 101034.7 NaN 5195 2377 7571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7575 41.363 NaN 111780 35 0 33641 0.264 + 7920 GAPAPGVPF 9 33 406.7185922590961 811.4226315849922 2 406.7181091308594 MULTI HCD FTMS 0 0 0 7571 63078.3125 0.8081689482474127 2 -0.049297332763671875 4 Unmodified _GAPAPGVPF_ REV__ENSG00000004777|ENST00000007510|ARHGAP33;REV__nc|ENSG00000004777|O14559-10|ARHGAP33 14.581692164780916 0.23437375358055648 2 YVV{[RE]|[WV]}{M(Oxidation (M))|F} 6 -1 + 62.14 0 0 7.6582 7.6582 96.367 0 0 0 42.53591878376909 11.694699959806982 11.694699959806982 62.140012553530966 0 0.8494850021680094 2 0 0 YVV{[RE]|[WV]}{M(Oxidation (M))|F} 7.6582 - 25 + NaN NaN 92987.1 NaN 5196 2377 7571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7576 41.366 NaN 113690 35 0 13664 0.261 + 15324 LPASPETHL 9 39 482.7585950715194 963.5026372098388 2 482.7489929199219 MULTI HCD FTMS 0 0 0 7571 10662 0.2989449146040497 -3 0.08901214599609375 5 Unmodified _LPASPETHL_ ENSG00000141736|ENST00000269571|ERBB2;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-4|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2 20.453626601364224 0.18364154288633264 2 {I|L}MAT 4 6 50.918 0 0 5.2846 0 0 0 544.2587374322874 544.2587374322874 20.74031267727719 0 0 0 0 0 1.6989700043360187 0.3494850021680094 0 {I|L}MAT 5.2846 - 62 + NaN NaN 102507.4 NaN 5197 2377 7571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7577 41.369 NaN 64110 35 0 7386.1 0.261 + 11921 KFIDTTSKF 9 29 543.7950986694144 1085.5756444056287 2 543.7949829101562 MULTI HCD FTMS 0 0 0 7571 51547.04296875 0.006178270772256235 76 -1.9371299743652344 6 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 14.957161354070239 0.23112978309247678 2 K{M(Oxidation (M))|F}{I|L}D 4 5 41.186 0 0 3.7939 0 0 0 579.2793062799436 579.2793062799436 16.49288766643714 0 0 0 0 0.5 0 0.4247425010840047 0 + K{M(Oxidation (M))|F}{I|L}D 3.7939 + + 11 + NaN NaN 97843.1 NaN 5198 2377 7571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7579 41.374 NaN 983130 35 0 91841 0.327 + 18935 NAFKEITTM 9 77 535.7627051998916 1069.510857466583 2 535.7625732421875 MULTI HCD FTMS 0 0 0 7578 366396.4375 0.6987975116063094 6 -0.1239776611328125 1 Oxidation (M) _NAFKEITTM(Oxidation (M))_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 179.17365725063826 1.1335045685127237E-12 2 {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F} 9 0 + 107.14 0 0 10.018 10.018 99.407 0 0 0 4.374854021094947 4.374854021094947 4.374854021094947 84.47821070344786 0 3.079689690656103 1.5228787452803376 0.9802046884880937 1.2931576817365436 + + {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[QN]|[E{I|L}]|[KN]}[{I|L}V]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KE{[QG]|[NA]};[{M(Oxidation (M))|F}T][{I|L}V]E{I|L}H[DP] 10.018;2.119;1.7177;1.3613 +;-;-;- + 395 NaN NaN 235240.3 NaN 5199 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7580 41.379 NaN 188170 35 0 47146 0.261 + 21826 QARYEEEVL 9 39 568.7825879955622 1135.5506230579242 2 568.7822265625 MULTI HCD FTMS 0 0 0 7578 71989.3203125 0.45682533654718505 4 -0.08829116821289062 2 Unmodified _QARYEEEVL_ ENSG00000277586|ENST00000610854|NEFL 29.081581746732265 0.1154664336125038 2 QEEV{I|L} 5 4 51.278 0 0 4.5157 0 0 519.2436390607437 0 519.2436390607437 0 45.79308182573026 0 0 0 0.5 0 0.805462187404089 0.75 QEEV{I|L} 4.5157 - 44 NaN NaN 111127.9 NaN 5200 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7581 41.382 NaN 277670 35 0 51491 0.261 + 13387 KYPASTVQI 9 42 503.78196358156436 1005.5493742299287 2 503.7816162109375 MULTI HCD FTMS 0 0 0 7578 82092.25 1 0 0 3 Unmodified _KYPASTVQI_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 28.494509381512117 0.11816142465008336 2 STVQ{I|L} 5 4 40.019 0 0 3.9798 0 0 459.24180800605626 0 459.24180800605626 0 20.55462187404089 0 0 0 0.3252574989159953 0 0.3807196863200844 0 + STVQ{I|L} 3.9798 + + 52 NaN NaN 124408 NaN 5201 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7582 41.386 NaN 198420 35 0 21602 0.261 + -1 VSPGYETEMRF 11 56 458.5401215244804 1372.5985351736413 3 458.8739929199219 MULTI HCD FTMS 0 0 0 7578 50188.8828125 0.5007304195949184 -9 0.2682533264160156 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 8.751783647060863 0.3805383164556717 2 R{M(Oxidation (M))|F} 2 -1 21.198 0 0 1.5444 0 0 1051.4187923206018 0 1051.4187923206018 0 6.3479077989929245 0 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.5444 + + 52 + NaN NaN 131107.3 NaN 5202 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7583 41.389 NaN 187760 35 0 32896 0.261 + 10463 IPDLDRHQL 9 36 553.8011199172763 1105.5876869013525 2 553.8021240234375 MULTI HCD FTMS 0 0 0 7578 32871.09375 0.3351911246648089 -3 0.082366943359375 5 Unmodified _IPDLDRHQL_ ENSG00000166171|ENST00000370151|DPCD 15.738622578938676 0.22437813149664254 2 {I|L}PD{I|L} 4 5 36.67 0 0 3.3168 0 0 0 664.3182467096311 664.3182467096311 30.21652514092061 0 0 0 0 0.5 0 0.4247425010840047 0 + {I|L}PD{I|L} 3.3168 + + 144 + NaN NaN 125555.7 NaN 5203 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7584 41.392 NaN 90640 35 0 18772 0.261 -1 RYGSDFYSM 9 32 571.2344760398925 1140.4543991465848 2 571.2341918945312 MULTI HCD FTMS 0 0 0 7578 9845.5625 0.257402035450603 -6 0.18567657470703125 6 Oxidation (M) _RYGSDFYSM(Oxidation (M))_ ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2 10.799506525563784 0.2670509983294061 2 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4 -1 32.907 0 0 2.8855 0 0 578.2469959943375 0 578.2469959943375 0 25.9176003468815 0 0 0 1 0 0 0 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 2.8855 + + 12 NaN NaN 96478.2 NaN 5204 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7585 41.396 NaN 59829 35 0 6336.5 0.261 + 12941 KYHGYPYSF 9 35 581.2717889503572 1160.5290249675143 2 581.2716674804688 MULTI HCD FTMS 0 0 0 7578 29634.57421875 0.20455924283173837 7 -0.14360809326171875 7 Unmodified _KYHGYPYSF_ ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3 27.628801355627647 0.12213550946336599 2 [YK]HGY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{M(Oxidation (M))|F} 9 0 + 31.105 0 0 2.6802 2.6802 88.348 0 0 0 4.762036441594194 23.657424843733637 4.762036441594194 31.104699792700576 0 1.274227503252014 0 0 0 + + [YK]HGY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{M(Oxidation (M))|F} 2.6802 + + 21 NaN NaN 95052.9 NaN 5205 2378 7578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7587 41.401 NaN 4944700 35 0 499190 0.327 + 21869 QAVRQDPLL 9 101 520.2980537896103 1038.5815546460205 2 520.298095703125 MULTI HCD FTMS 0 0 0 7586 3512210.25 0.8920793959013031 2 -0.039081573486328125 1 Unmodified _QAVRQDPLL_ ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17 157.7952019732125 5.857147217999733E-07 2 [QA]VRGADP{I|L}{I|L} 10 2 + 88.491 0 0 8.5204 8.5204 94.279 0 0 0 15.633185011513504 54.80061751782517 15.633185011513504 12.156366524931386 0 2.2856668758921828 1.0457574905606752 1.2134679910804405 2.341129063296272 [QA]VRGADP{I|L}{I|L};[QA]VRDQP{I|L}{I|L};[QA]VRGAD{I|L}P{I|L};[Q{I|L}]GRGADP{I|L}{I|L};[QA]VRD[AG]P{I|L}{I|L};QAVRQDP{I|L}{I|L};[QA]VRDQ{I|L}P{I|L};QAVRQD{I|L}P{I|L};[Q{I|L}][RN]ADP{I|L}{I|L};[Q{I|L}]GRDQP{I|L}{I|L} 8.5204;7.3499;7.1088;6.6951;6.4633;6.063;5.9383;5.6283;5.5585;5.5247 -;-;-;-;-;+;-;-;-;- + 1670 NaN NaN 710001.2 NaN 5206 2379 7586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7588 41.405 NaN 135780 35 0 17620 0.261 + 29388 TYQEVAQKF 9 58 557.282165629314 1112.549778325428 2 557.7835693359375 MULTI HCD FTMS 0 0 0 7586 24304.859375 0.3279112244873222 -6 0.17473602294921875 2 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 46.0223103267499 0.037698999139422325 2 [YT]QEVAQK{M(Oxidation (M))|F} 9 0 + 62.519 0 0 5.6194 5.6194 87.906 0 0 0 1.3639851917064618 1.3639851917064618 1.3639851917064618 9.208187539523749 0 2.142642683904553 2 0 0 + + [YT]QEVAQK{M(Oxidation (M))|F};[YT][AG]EVAQK{M(Oxidation (M))|F};[YT]QEVA[AG]K{M(Oxidation (M))|F};[YT][AG]EVA[AG]K{M(Oxidation (M))|F};[YT]QEVA[KG]A{M(Oxidation (M))|F};[YT]QEV[KQ]A{M(Oxidation (M))|F};[YT][AG]EVA[KG]A{M(Oxidation (M))|F};[YT][AG]EV[KQ]A{M(Oxidation (M))|F} 5.6194;4.7918;4.7918;3.968;2.8829;2.6099;2.0591;1.7822 +;-;-;-;-;-;-;- + 209 + NaN NaN 115532.4 NaN 5207 2379 7586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7590 41.41 NaN 1822400 35 0 428850 0.327 -1 0 112 560.826996754403 1119.639440575606 2 560.8267822265625 MULTI HCD FTMS 0 0 0 7589 1044447 0.898486807348567 1 -0.02941131591796875 1 NaN NaN 2 VY{I|L}DRVR 7 -1 95.632 0 0 8.5413 0 0 0 215.1039217584594 215.1039217584594 58.32628763040345 0 0 0 0 2.1549471895720984 2 0.5501648626366046 2.142159058960253 VY{I|L}DRVR 8.5413 - 2387 + NaN NaN 366380.2 NaN 5208 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7591 41.415 NaN 985290 35 0 128510 0.262 + 24891 RYQQWMERF 9 92 453.88003143201183 1358.6182648962356 3 453.8797607421875 MULTI HCD FTMS 0 0 0 7589 391911.78125 0.6695505356435464 -6 0.147979736328125 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 44.391923383255 0.04518338856193886 2 [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 9 0 [YR]Q + + 53.097 8.3827 1.8744 3.9082 3.9082 60.853 0 0 0 0 38.27668375690983 0 0 0 1.3494850021680094 0 0.7742275032520141 0 + + [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 3.9082 + + 1264 + NaN NaN 231679.7 NaN 5209 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7592 41.418 NaN 211870 35 0 39665 0.261 + 10464 IPDLDRHQL 9 45 553.8011199172763 1105.5876869013525 2 553.8009033203125 MULTI HCD FTMS 0 0 0 7589 82565.6484375 0.8419334254262484 -1 0.009670257568359375 3 Unmodified _IPDLDRHQL_ ENSG00000166171|ENST00000370151|DPCD 24.881564428377168 0.14538514251145815 2 {I|L}PDA 4 6 43.047 0 0 3.8936 0 0 0 706.3521822565061 706.3521822565061 37.562893943202624 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}PDA 3.8936 - 122 + NaN NaN 109988.3 NaN 5210 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7593 41.421 NaN 70377 35 0 17691 0.261 + 12768 KYDFRKHF 8 32 570.8004279402086 1139.586302947217 2 570.8001098632812 MULTI HCD FTMS 0 0 0 7589 49962.46875 0.8077251777525076 -3 0.05896759033203125 4 Unmodified _KYDFRKHF_ REV__ENSG00000138109|ENST00000260682|CYP2C9 6.2057823575117 0.5327852213979698 2 KY 2 -1 25.969 0 0 2.2788 0 0 0 845.4049056840674 845.4049056840674 15 0 0 0 0 0.5 0 0 0 KY 2.2788 + + 18 + NaN NaN 106107.9 NaN 5211 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7594 41.425 NaN 189660 35 0 41462 0.261 + 29851 VEWEPTPKQ 9 52 557.282165629314 1112.549778325428 2 558.3006591796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VEWEPTPKQ_ REV__ENSG00000277399|ENST00000616987|GPR179;REV__nc|ENSG00000277399|Q6PRD1|GPR179 4.3292370932331545 0.3181982124262546 2 [EP]ND[PS]{I|L}T 8 -1 16.375 0 0 1.4719 0 0 0 256.1663912408813 256.1663912408813 1.4536501951208471 0 0 0 0 0 0 0 0 [EP]ND[PS]{I|L}T 1.4719 - 64 + NaN NaN 109655.5 NaN 5212 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7595 41.428 NaN 96502 35 0 10350 0.261 + 9710 HVVPSAEEL 9 33 490.7558837249099 979.4972145166198 2 490.7559509277344 MULTI HCD FTMS 0 0 0 7589 24362.52734375 0.5329846706404039 -1 0.009670257568359375 6 Unmodified _HVVPSAEEL_ ENSG00000183111|ENST00000333677|ARHGEF37 20.453626601364224 0.18364154288633264 2 EE{I|L} 3 6 30.445 0 0 3.1083 0 0 590.3201771466812 0 590.3201771466812 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 + EE{I|L} 3.1083 + + 11 NaN NaN 94767.2 NaN 5213 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7596 41.431 NaN 18621 35 0 3556 0.261 + 19335 NPDDLQEANKL 11 18 628.8093098529945 1255.6040667727889 2 628.8090209960938 MULTI HCD FTMS 0 0 0 7589 14546.513671875 0.5844617211616732 -3 0.05896759033203125 7 Unmodified _NPDDLQEANKL_ ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3 6.630372943996041 0.3898421031449734 2 N[K{I|L}] 3 8 13.952 0 0 1.1112 0 0 882.3733998029312 0 882.3733998029312 0 13.952424927286843 0 0 0 0.5 0 0 0 + N[K{I|L}] 1.1112 + + 2 NaN NaN 88552.8 NaN 5214 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7597 41.435 NaN 64703 35 0 7673.6 0.263 + 20512 PDLDRHQL 8 35 497.25852566113724 NaN 0 497.25897216796875 PEAK HCD FTMS 0 0 0 7589 18890.6953125 0.759419391802494 -1 0.009670257568359375 8 Unmodified _PDLDRHQL_ ENSG00000166171|ENST00000370151|DPCD 12.240655878213236 0.38822285293237185 2 {I|L} 1 7 10.485 0 0 1.0564 0 0 212.08026565056554 664.3156221979124 876.395887848478 0 0 0 0 0 0.3494850021680094 0 0 0 + {I|L} 1.0564 + + 2 + NaN NaN 88474.9 NaN 5215 2380 7589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7599 41.44 NaN 1464700 35 0 191360 0.327 + 15623 LPEEEQQRVL 10 99 620.8302435521206 1239.645934171041 2 620.8298950195312 MULTI HCD FTMS 0 0 0 7598 855044.6875 1 0 0 1 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 192.32093250933514 9.400247209675653E-17 2 {I|L}PEEEQQRV{I|L} 10 0 + 127.37 0 0 10.274 10.274 93.537 0 0 0 73.54498525971638 9.259687322722812 9.259687322722812 9.164539485499247 0 3.2658715643802765 1.3010299956639813 1.4436726795685342 0.9124379954164592 + + {I|L}PEEEQQRV{I|L};{I|L}PEEE[AG]QRV{I|L};{I|L}PEEEQ[AG]RV{I|L};{I|L}PEEE[AG][AG]RV{I|L};[EP]{I|L}EEQQRV{I|L};[{I|L}P]EEEQQRV{I|L};[EP]E{I|L}EQQRV{I|L};[EP]{I|L}EEQ[AG]RV{I|L};[{I|L}P]EEEQ[AG]RV{I|L};[EP]EE{I|L}QQRV{I|L} 10.274;9.5351;9.5351;8.7987;8.5748;8.5325;8.0064;7.8355;7.7932;7.6822 +;-;-;-;-;+;-;-;-;- + 5779 + NaN NaN 304444.4 NaN 5216 2381 7598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7600 41.444 NaN 134300 35 0 15991 0.264 + 25012 RYVRKFVLM 9 55 404.5741841413624 1210.7007230242873 3 404.5740051269531 MULTI HCD FTMS 0 0 0 7598 23366.677734375 0.24046102231528577 14 -0.3276252746582031 2 Unmodified _RYVRKFVLM_ ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF 7.910154910731844 0.2910521888787154 2 {I|L}M 2 7 29.024 0 0 2.3973 0 0 948.5637401406226 0 948.5637401406226 0 23.53917193908117 0 0 0 0.805462187404089 0 0 0 + {I|L}M 2.3973 + + 15 NaN NaN 114169.8 NaN 5217 2381 7598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7601 41.448 NaN 69407 35 0 10193 0.261 -1 YSMIPPAQQ 9 37 525.7493151214546 1049.4840773097092 2 525.7486572265625 MULTI HCD FTMS 0 0 0 7598 17788.671875 0.4285335859045678 2 -0.03264617919921875 3 Oxidation (M) _YSM(Oxidation (M))IPPAQQ_ ENSG00000179912|ENST00000402412|R3HDM2;ENST00000546843.2_1_12:57662084-57662234:-|nuORF;ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5|R3HDM2 4.3292370932331545 0.3181982124262546 2 G{M(Oxidation (M))|F}[MT] 4 -1 12.703 0 0 1.2104 0 0 595.329393455275 0 595.329393455275 0 8.723637474483468 0 0 0 0 0 0 0 G{M(Oxidation (M))|F}[MT] 1.2104 - 11 NaN NaN 98071.4 NaN 5218 2381 7598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7602 41.451 NaN 44650 35 0 5936.2 0.261 -1 0 32 597.3064865365513 596.2992100699513 1 598.3023071289062 MULTI HCD FTMS 0 0 0 7598 5361.5595703125 1 0 0 4 NaN NaN 2 P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3 -1 4.1812 0 0 0.70119 0 0 206.11001436858254 0 206.11001436858254 0 4.1812123800902175 0 0 0 0 0 0 0 P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 0.70119 - 5 + NaN NaN 85576.9 NaN 5219 2381 7598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7603 41.454 NaN 76366 35 0 6800.9 0.263 + 3991 ERHMSEFMECN 11 37 471.51704544378117 1411.5293069315435 3 471.5162658691406 MULTI HCD FTMS 0 0 0 7598 12056.1337890625 0.38155133190687013 -5 0.11133193969726562 5 Unmodified _ERHMSEFMECN_ ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1 0.40826533853263924 0.41713015341995335 2 T 1 11 6.7827 0 0 0.48052 0 0 819.2221894985947 488.2292574518188 1307.4514469504136 0 0 0 0 0 0.5 0 0 0 T 0.48052 - 1 + NaN NaN 92246.6 NaN 5220 2381 7598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7604 41.458 NaN 58115 35 0 6649.2 0.261 + 20564 PEEKVTLRR 9 40 564.3319702148438 NaN 0 564.3319702148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _PEEKVTLRR_ ENST00000532312.2_1_11:118995018-118995186:+|nuORF 4.3292370932331545 0.2742679634796037 2 VK 2 8 9.464 0 0 0.84001 0 0 131.18455279765027 765.2837618463499 896.4683146440002 0 0 0 0 0 0 0 0 0 VK 0.84001 - 15 + NaN NaN 107191.4 NaN 5221 2381 7598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7606 41.463 NaN 96580 35 0 17180 0.327 + 8146 GPDPKAYQL 9 45 494.7583276345705 987.502102335941 2 494.7584533691406 MULTI HCD FTMS 0 0 0 7605 43266.79296875 0.7698599887957674 1 -0.009662628173828125 1 Unmodified _GPDPKAYQL_ ENSG00000185803|ENST00000643944|SLC52A2 18.1463463914782 0.20357593197100715 2 Q{I|L} 2 7 28.469 0 0 2.8829 0 0 728.3508167951187 0 728.3508167951187 0 22.35985638199878 0 0 0 0.3252574989159953 0 0 0.4247425010840047 + Q{I|L} 2.8829 + + 24 NaN NaN 101237 NaN 5222 2382 7605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7607 41.467 NaN 140630 35 0 24635 0.261 + -1 IMGNWVGRV 9 51 524.2724638710874 NaN 0 524.2821044921875 PEAK HCD FTMS 0 0 0 7605 10073.541015625 0.4822700533066755 8 -0.17987060546875 2 Oxidation (M) _IM(Oxidation (M))GNWVGRV_ REV__ENSG00000161509|ENST00000293190|GRIN2C;REV__ENST00000584176.1_1_17:72843434-72846906:-|nuORF 18.13498045792455 0.19991664011725976 2 YGN{I|L}Q 5 -1 27.959 0 0 2.6716 0 0 97.03316575893275 371.2035006158813 468.23666637481404 0 0 0 0 0 0 0 0 0 YGN{I|L}Q 2.6716 - 59 + NaN NaN 105372.3 NaN 5223 2382 7605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7609 41.472 NaN 894960 35 0 343070 0.327 + 9683 HVSDTSVVL 9 42 478.75597276160033 955.4973925900007 2 478.7555847167969 MULTI HCD FTMS 0 0 0 7608 586605.1875 0.95277928892815 2 -0.045654296875 1 Unmodified _HVSDTSVVL_ CON__P07744;CON__P13647;CON__P19013;CON__Q5XQN5;CON__Q922U2;ENSG00000170477|ENST00000551956|KRT4;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 26.88365393820708 0.12808753336095696 2 SVV{I|L} 4 5 43.29 0 0 4.5306 0 0 539.23246962715 0 539.23246962715 0 37.805168975722765 0 0 0 1.0994850021680094 0 0.4247425010840047 0 + SVV{I|L} 4.5306 + + 16 NaN NaN 215278.2 NaN 5224 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7610 41.477 NaN 402090 35 0 64864 0.261 + 2316 DMHTEVTTL 9 60 531.742144989856 1061.469737046512 2 531.7418212890625 MULTI HCD FTMS 0 0 0 7608 154069.21875 0.29090387385636396 13 -0.3213081359863281 2 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 46.020951573049366 0.037705236580089195 2 VTT{I|L} 4 5 52.735 0 0 4.9681 0 0 629.2096198693537 0 629.2096198693537 0 38.13100339696028 0 0 0 1.2302046884880937 0 0.8494850021680094 0 + VTT{I|L} 4.9681 + + 94 NaN NaN 156087.3 NaN 5225 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7611 41.48 NaN 332250 35 0 79982 0.261 -1 AFMQTMLQVCF 11 59 464.54336203710443 1390.6082567115134 3 464.5433044433594 MULTI HCD FTMS 0 0 0 7608 71537.5546875 0.6512513079353484 -3 0.0620574951171875 3 Carbamidomethyl (C),Oxidation (M) _AFM(Oxidation (M))QTMLQVC(Carbamidomethyl (C))F_ ENST00000298316.6_1_14:50361412-50361460:+|nuORF 4.406150317652783 0.39959678800402487 2 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 5 -1 36.16 0 0 2.6003 0 0 607.271763700182 0 607.271763700182 0 31.555781609639766 0 0 0 1.1747425010840047 0 0 0 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 2.6003 - 157 + NaN NaN 133340.6 NaN 5226 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7612 41.483 NaN 265800 35 0 30665 0.261 + 2384 DPGRDYEL 8 66 482.72210693464956 963.4296609360991 2 482.7216796875 MULTI HCD FTMS 0 0 0 7608 55815.38671875 0.08515067911067242 -8 0.18032073974609375 4 Unmodified _DPGRDYEL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 24.020572477871973 0.4170589785259073 2 DPCT 4 6 27.868 0 0 2.8926 0 0 0 544.256856517269 544.256856517269 2.690775249321078 0 0 0 0 0 1.3010299956639813 0.2742275032520141 0 DPCT 2.8926 - 137 + NaN NaN 132406.1 NaN 5227 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7613 41.487 NaN 55234 35 0 11793 0.261 -1 0 33 438.263548911049 874.512544888898 2 438.2630615234375 MULTI HCD FTMS 0 0 0 7608 12060.8076171875 0.15096619945980938 36 -0.9168357849121094 5 NaN NaN 2 P 1 -1 3.0989 0 0 0.35436 0 0 368.2141878105761 406.2191256158813 774.4333134264574 0 0 0 0 0 0 0 0 0 P 0.35436 - 1 + NaN NaN 92526.3 NaN 5228 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7614 41.49 NaN 121820 35 0 18384 0.261 -1 MELHGMIM 8 42 505.2119340475792 1008.4093151619584 2 505.2118835449219 MULTI HCD FTMS 0 0 0 7608 22520.201171875 0.8891224083103406 2 -0.045654296875 6 3 Oxidation (M) _M(Oxidation (M))ELHGM(Oxidation (M))IM(Oxidation (M))_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 2.8892196856762586 0.5377058178582064 2 G 1 -1 2.4743 0 0 0.24536 0 0 526.2156333766053 422.13999353580317 948.3556269124085 0 0 0 0 0 0 0 0 0 G 0.24536 + + 6 + NaN NaN 97130.3 NaN 5229 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7615 41.493 NaN 27970 35 0 8774.4 0.261 + 24509 RYLEKPMEI 9 18 589.8153497983772 1177.6161466635542 2 589.667724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 1.4819007175156935 0.3397831423917744 2 K 1 8 5.4846 0 0 0.46573 0 0 488.2273049660917 558.2686861627561 1046.495991128848 0 0 0 0 0 0 0 0 0 + K 0.46573 + + 1 + NaN NaN 88416.5 NaN 5230 2383 7608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7617 41.498 NaN 407170 35 0 42261 0.327 + 22836 QYLRRLHYF 9 63 432.5715107453068 1294.6927028361204 3 432.5708923339844 MULTI HCD FTMS 0 0 0 7616 74846.3203125 0.11197273522466476 17 -0.4169502258300781 1 Unmodified _QYLRRLHYF_ ENSG00000183856|ENST00000361170|IQGAP3 17.11289562659939 0.2125047172822487 2 Y{M(Oxidation (M))|F} 2 7 24.464 0 0 1.8896 0 0 966.5501267396463 0 966.5501267396463 0 9.859856381998782 0 0 0 0.3494850021680094 0 0 0 + Y{M(Oxidation (M))|F} 1.8896 + + 14 NaN NaN 151059.8 NaN 5231 2384 7616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7618 41.503 NaN 183070 35 0 23520 0.261 + 18303 MPEKEPSVL 9 47 515.2679596723347 1028.5213664114692 2 515.2676391601562 MULTI HCD FTMS 0 0 0 7616 83870.8828125 0.5044784054692354 7 -0.15388107299804688 2 Unmodified _MPEKEPSVL_ ENSG00000155229|ENST00000438925|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19 27.223235318498237 0.1251536255799991 2 MPE 3 6 25.93 0 0 2.5211 0 0 0 668.3598116510374 668.3598116510374 10.991443139292869 0 0 0 0 0.4247425010840047 0 0 0 + MPE 2.5211 + + 70 + NaN NaN 110238.8 NaN 5232 2384 7616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7619 41.506 NaN 293320 35 0 43855 0.261 + 4839 FAAASREVL 9 64 482.2663437335606 962.5181345339212 2 482.26611328125 MULTI HCD FTMS 0 0 0 7616 65689.5546875 0.6638090664419092 -2 0.035686492919921875 3 Unmodified _FAAASREVL_ ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;nc|ENSG00000006015|Q96EN9-2|REX1BD;nc|ENSG00000006015|Q96EN9-3|REX1BD 43.77239144664712 0.04802738721622131 2 SAAS{I|L} 5 5 46.815 0 0 4.8638 0 0 515.3090077130875 0 515.3090077130875 0 28.315220735720796 0 0 0 1.2134679910804405 0 0.2742275032520141 0 SAAS{I|L} 4.8638 - 228 NaN NaN 145403.8 NaN 5233 2384 7616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7620 41.51 NaN 96979 35 0 20403 0.261 + 35413 YYEEQHPEL 9 29 604.2670384843465 1206.5195240354929 2 604.266845703125 MULTI HCD FTMS 0 0 0 7616 47800.06640625 0.022315665578390435 27 -0.6733207702636719 4 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 37.07464296494664 0.07877380486334713 2 YYEEQH 6 3 76.675 0 0 6.3551 0 0 0 354.1670321100219 354.1670321100219 76.67525978212623 0 0 0 0 2.004432191740108 2 0 0 + YYEEQH 6.3551 + + 49 + NaN NaN 105193.8 NaN 5234 2384 7616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7621 41.513 NaN 22751 35 0 4790.6 0.261 -1 PHMTMDQMC 9 24 583.70919130128 NaN 0 583.811767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _PHMTMDQM(Oxidation (M))C(Carbamidomethyl (C))_ ENST00000300851.10_3_16:31102263-31102332:-|nuORF 0.5247636613948944 0.2927039108006614 2 M 1 -1 2.2185 0 0 0.19036 0 0 451.03567888986623 580.3167208307249 1031.3523997205912 0 0 0 0 0 0 0 0 0 M 0.19036 + + 2 + NaN NaN 85088.1 NaN 5235 2384 7616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7623 41.518 NaN 1470500 35 0 173980 0.327 + 13986 KYSLIKGNF 9 102 535.3053428099587 1068.5961326867173 2 535.3051147460938 MULTI HCD FTMS 0 0 0 7622 967849.0625 0.2454799472414803 -5 0.1077117919921875 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 181.69086120494794 9.610660986922852E-13 2 KYS{I|L}{I|L}K 6 3 77.957 0 0 7.2952 0 0 0 333.1193941705688 333.1193941705688 54.89216418415887 0 0 0 0 2.1237125054200234 0 0.5796896906561032 1.7302046884880937 + KYS{I|L}{I|L}K 7.2952 + + 2672 + NaN NaN 312115.7 NaN 5236 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7624 41.522 NaN 292460 35 0 30033 0.262 + -1 VSPGYETEMRF 11 65 458.5401215244804 1372.5985351736413 3 458.5393371582031 MULTI HCD FTMS 0 0 0 7622 106630.625 0.9002440054945758 -1 0.01963043212890625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 11.631370582801994 0.35573789852458537 2 R{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.6727 0 0 1051.4189219918037 0 1051.4189219918037 0 6.247001652308004 0 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.6727 + + 116 + NaN NaN 140684.2 NaN 5237 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7625 41.526 NaN 244410 35 0 51606 0.261 + 443 ALHSLMCFSK 10 38 568.7825879955622 1135.5506230579242 2 569.2724609375 MULTI HCD FTMS 0 0 0 7622 5621.99462890625 0.05810646810708319 8 -0.19332122802734375 3 Unmodified _ALHSLMCFSK_ REV__ENSG00000197360|ENST00000357774|ZNF98;REV__ENSG00000229676|ENST00000456783|ZNF492 1.4819007175156935 0.4674597685733628 2 P{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.96597 0 0 136.07861426511062 752.3301736686936 888.4087879338042 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 0.96597 - 18 + NaN NaN 126106.4 NaN 5238 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7626 41.529 NaN 63323 35 0 8789 0.261 + 12549 KSLYATFKE 9 30 543.7950986694144 1085.5756444056287 2 543.7945556640625 MULTI HCD FTMS 0 0 0 7622 64981.125 0.007788438719544352 84 -2.198047637939453 4 Unmodified _KSLYATFKE_ nc|ENSG00000118564|Q9UKA1-2|FBXL5 17.11289562659939 0.2125047172822487 2 GD{I|L}KE 5 6 44.923 0 0 4.1382 0 0 525.2709828107437 0 525.2709828107437 0 26.963950151760656 0 0 0 0.5 0 0.9247425010840047 0.3252574989159953 GD{I|L}KE 4.1382 - 25 NaN NaN 86563.9 NaN 5239 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7627 41.533 NaN 144710 35 0 26715 0.263 + 34924 YSLESCFWVI 10 60 416.1981824958196 1245.5727180876588 3 416.1982421875 MULTI HCD FTMS 0 0 0 7622 32884.24609375 0.7717356309236699 1 -0.0296630859375 5 Unmodified _YSLESCFWVI_ ENST00000581440.5_1_17:25630497-25631818:+|nuORF 3.5964929083625545 0.45626689593999237 2 E{I|L} 2 8 20.969 0 0 1.6835 0 0 985.4365710015661 0 985.4365710015661 0 15.61697532653994 0 0 0 0 0 0 0 E{I|L} 1.6835 - 18 NaN NaN 109617.8 NaN 5240 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7628 41.536 NaN 141480 35 0 17135 0.261 -1 YYMMFKKAI 9 47 404.20588509109785 1209.5958258734936 3 404.2057189941406 MULTI HCD FTMS 0 0 0 7622 48026.03515625 1 0 0 6 Oxidation (M) _YYM(Oxidation (M))MFKKAI_ ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11 16.149105407346934 0.22083165093524068 2 YY 2 -1 41.766 0 0 3.4529 0 0 0 880.4446250449141 880.4446250449141 19.089934634871284 0 0 0 0 0.3807196863200844 2 0 0 YY 3.4529 + + 15 + NaN NaN 118872.9 NaN 5241 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7629 41.539 NaN 47128 35 0 5951.9 0.261 -1 NYIMKIHNF 9 31 598.2994908249652 1194.5844287167304 2 598.7989501953125 MULTI HCD FTMS 0 0 0 7622 35235.58203125 0.8881767635711124 3 -0.0755615234375 7 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ ENSG00000101126|ENST00000621696|ADNP 3.944395688203298 0.32111559684428237 2 A 1 -1 6.9897 0 0 0.58512 0 0 171.09146104270536 949.4374483697874 1120.5289094124928 0 0 0 0 0 0 0 0 0 A 0.58512 - 14 + NaN NaN 98192.3 NaN 5242 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7630 41.543 NaN 54057 35 0 4347.1 0.261 + 32412 VYYVSLYGE 9 44 546.7636883470262 NaN 0 546.7537231445312 PEAK HCD FTMS 0 0 0 7622 4741.05859375 0.30274849590587316 -5 0.1077117919921875 8 Unmodified _VYYVSLYGE_ ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6;TDRD6|p.A477Sfs*21|1|0.19|ENSG00000180113|chr6:46689552-46689553|-/C|frameshift_variant 2.0597508629832335 0.2852655770354268 2 T 1 9 1.2591 0 0 0.11535 0 0 564.2172437821399 423.2236422174438 987.4408859995838 0 0 0 0 0 0 0 0 0 T 0.11535 - 2 + NaN NaN 87179.8 NaN 5243 2385 7622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7632 41.548 NaN 1251600 35 0 119110 0.327 + 21870 QAVRQDPLL 9 70 520.2980537896103 1038.5815546460205 2 520.2978515625 MULTI HCD FTMS 0 0 0 7631 664239.0625 0.16871255973615132 9 -0.21966171264648438 1 Unmodified _QAVRQDPLL_ ENSG00000115234|ENST00000233575|SNX17;nc|ENSG00000115234|Q15036-2|SNX17 82.5293158979368 0.005033931517079822 2 [{I|L}P]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DP{I|L} 8 5 62.858 0 0 6.0523 0 0 0 128.072796266099 128.072796266099 44.34882755080853 0 0 0 0 1.2302046884880937 1.6989700043360187 0.8494850021680094 1.8494850021680094 [{I|L}P]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DP{I|L} 6.0523 - 174 NaN NaN 270828.6 NaN 5244 2386 7631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7633 41.552 NaN 186650 35 0 43840 0.261 + 20517 PDPGASQPLL 10 33 497.76349642032295 993.5124399074459 2 497.7633972167969 MULTI HCD FTMS 0 0 0 7631 112482.3828125 0.750947332822331 -2 0.04929351806640625 2 Unmodified _PDPGASQPLL_ ENSG00000132334|ENST00000254667|PTPRE 10.150570793230772 0.4161670024087991 2 P{I|L}{I|L} 3 7 31.198 0 0 3.1402 0 0 652.2811615162287 0 652.2811615162287 0 27.21848749616356 0 0 0 0.5 0 0 0 + P{I|L}{I|L} 3.1402 + + 19 NaN NaN 105555.7 NaN 5245 2386 7631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7634 41.556 NaN 84918 35 0 5894.6 0.261 -1 MLCCSAPQIYF 11 50 469.2032966282528 1404.5880604849585 3 469.20233154296875 MULTI HCD FTMS 0 0 0 7631 52462.41015625 1 0 0 3 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LC(Carbamidomethyl (C))C(Carbamidomethyl (C))SAPQIYF_ ENST00000481526.5_1_3:32805900-32805987:+|nuORF 2.6312355333042263 0.4073809613003177 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1024 0 0 1239.5089111703085 0 1239.5089111703085 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1024 + + 12 + NaN NaN 102513.5 NaN 5246 2386 7631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7635 41.559 NaN 110110 35 0 13119 0.261 + 24510 RYLEKPMEI 9 41 589.8153497983772 1177.6161466635542 2 589.8148803710938 MULTI HCD FTMS 0 0 0 7631 43942.9453125 0.08201019821496537 -8 0.17327117919921875 4 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 18.373094154950223 0.20161688160436167 2 {I|L}{M(Oxidation (M))|F}VEKE 6 6 61.146 0 0 5.1924 0 0 0 429.2248629205688 429.2248629205688 46.28673551690787 0 0 0 0 1 0 0.8494850021680094 0 {I|L}{M(Oxidation (M))|F}VEKE 5.1924 - 90 + NaN NaN 98409.5 NaN 5247 2386 7631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7637 41.564 NaN 1187800 35 0 144030 0.327 + 24892 RYQQWMERF 9 98 453.88003143201183 1358.6182648962356 3 453.8796691894531 MULTI HCD FTMS 0 0 0 7636 506759.9375 0.8657596015960929 1 -0.029571533203125 1 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 59.05245873256422 0.018907022117377846 2 [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 9 0 [YR]Q + + 56.259 8.7455 1.9555 4.1409 4.1409 61.119 0 0 0 0 42.87691834842093 0 0 0 1.3494850021680094 0 0.3494850021680094 0.5649093276264391 + + [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 4.1409 + + 869 + NaN NaN 262060.5 NaN 5248 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7638 41.568 NaN 474620 35 0 69984 0.261 + 15624 LPEEEQQRVL 10 51 620.8302435521206 1239.645934171041 2 620.8298950195312 MULTI HCD FTMS 0 0 0 7636 293807.75 0.3436168358159643 6 -0.14733123779296875 2 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 111.30893174071366 4.9566027960446945E-05 2 {I|L}PEEEQQRV{I|L} 10 0 + 117.46 0 0 9.4755 9.4755 93.095 0 0 0 86.03560505489219 7.269987279362624 7.269987279362624 9.164539485499262 0 3.309894379144197 1.5228787452803376 1.3851518780601921 0.28872548999643577 + + {I|L}PEEEQQRV{I|L};{I|L}PEEEQ[AG]RV{I|L};{I|L}PEEE[AG]QRV{I|L};{I|L}PEEE[AG][AG]RV{I|L};[{I|L}P]EEEQQRV{I|L};[EP]{I|L}EEQQRV{I|L};[EP]E{I|L}EQQRV{I|L};[{I|L}P]EEE[AG]QRV{I|L};[{I|L}P]EEEQ[AG]RV{I|L};[EP]{I|L}EE[AG]QRV{I|L} 9.4755;8.7362;8.7362;7.9998;7.5504;7.3854;7.1241;6.8112;6.8112;6.6461 +;-;-;-;+;-;-;-;-;- + 1324 + NaN NaN 157529.8 NaN 5249 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7639 41.572 NaN 375290 35 0 81978 0.261 -1 0 70 560.826996754403 1119.639440575606 2 560.8267211914062 MULTI HCD FTMS 0 0 0 7636 201031.296875 0.1729374186592146 8 -0.20333480834960938 3 NaN NaN 2 [YV]{NN|[MP]|[D{I|L}]|[EV]}RVRS 8 -1 42.089 0 0 3.7591 0 0 0 128.07153257496125 128.07153257496125 21.11941264025134 0 0 0 0 1.3494850021680094 2 0.5 0.3494850021680094 [YV]{NN|[MP]|[D{I|L}]|[EV]}RVRS 3.7591 - 210 NaN NaN 147782.4 NaN 5250 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7640 41.575 NaN 429880 35 0 92499 0.261 + 29389 TYQEVAQKF 9 70 557.282165629314 1112.549778325428 2 558.3003540039062 MULTI HCD FTMS 0 0 0 7636 19633.373046875 0.8445395882592185 -5 0.10130691528320312 4 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 40.23920728925047 0.06424668180817725 2 [YT]Q{NN|[MP]|[D{I|L}]|[EV]}AQK{M(Oxidation (M))|F} 9 0 + 38.737 0 0 3.4818 3.4818 83.858 0 0 0 3.81778161138606 5.7910835859258185 3.81778161138606 8.093407049493639 0 1.086696871556164 2 0 0 + + [YT]Q{NN|[MP]|[D{I|L}]|[EV]}AQK{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[DP]{I|L}T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT][AG]{NN|[MP]|[D{I|L}]|[EV]}AQK{M(Oxidation (M))|F};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}A[AG]K{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[PS]{[QN]|[E{I|L}]|[KN]}{I|L}[SG];[YT]Q{NN|[MP]|[D{I|L}]|[EV]}[KQ]A{M(Oxidation (M))|F};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}A[KG]A{M(Oxidation (M))|F} 3.4818;2.7544;2.6542;2.6542;2.2013;1.1655;0.993 +;-;-;-;-;-;- + 565 + NaN NaN 162107.8 NaN 5251 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7641 41.579 NaN 163950 35 0 29609 0.261 + 10465 IPDLDRHQL 9 53 553.8011199172763 1105.5876869013525 2 553.8012084960938 MULTI HCD FTMS 0 0 0 7636 56372.53515625 0.5748385984031917 6 -0.14733123779296875 5 Unmodified _IPDLDRHQL_ ENSG00000166171|ENST00000370151|DPCD 12.872603262515298 0.2491399024913319 2 {I|L}PD{I|L} 4 5 34.909 0 0 3.1575 0 0 0 664.3200777643186 664.3200777643186 21.721675119240516 0 0 0 0 0.5 0 0.4247425010840047 0 + {I|L}PD{I|L} 3.1575 + + 56 + NaN NaN 113130.4 NaN 5252 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7642 41.582 NaN 113600 35 0 21321 0.261 -1 HPDVTEAML 9 38 514.739500016952 1027.4644471007039 2 514.739013671875 MULTI HCD FTMS 0 0 0 7636 45270.83203125 0.8132226669358386 10 -0.252685546875 6 Oxidation (M) _HPDVTEAM(Oxidation (M))L_ ENSG00000070756|ENST00000318607|PABPC1;ENSG00000101104|ENST00000217073|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;nc|ENSG00000101104|Q4VXU2|PABPC1L 16.942295170755138 0.21397866736869717 2 A{M(Oxidation (M))|F}{I|L} 3 -1 36.198 0 0 3.523 0 0 678.2982044904312 0 678.2982044904312 0 26.73393743112328 0 0 0 1 0 0 0 A{M(Oxidation (M))|F}{I|L} 3.523 + + 14 NaN NaN 100915.7 NaN 5253 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7643 41.585 NaN 14879 35 0 5409.7 0.261 + -1 TTMDGCYGEDS 11 13 626.2120361328125 NaN 0 626.2120361328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C),Oxidation (M) _TTM(Oxidation (M))DGC(Carbamidomethyl (C))YGEDS_ REV__tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1 0.35063188157827746 0.3411255017974031 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107197.9 NaN 5254 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7644 41.589 NaN 37263 35 0 5463.3 0.262 + 12707 KWRVLYET 8 30 547.80224609375 NaN 0 547.80224609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _KWRVLYET_ REV__ENSG00000153046|ENST00000397588|CDYL;REV__nc|ENSG00000153046|Q9Y232|CDYL 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 80445.2 NaN 5255 2387 7636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7646 41.594 NaN 156790 35 0 20560 0.327 + 32453 WDSSNQEI 8 49 489.7114890607917 977.4084251883834 2 489.7107849121094 MULTI HCD FTMS 0 0 0 7645 58998.87890625 0.6715123863133359 -2 0.0458984375 1 Unmodified _WDSSNQEI_ REV__ENSG00000196235|ENST00000432763|SUPT5H;REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF;REV__nc|ENSG00000196235|O00267-2|SUPT5H 16.942295170755138 0.46913822049235215 2 DE{I|L} 3 -1 37.435 0 0 3.83 0 0 602.247362205275 0 602.247362205275 0 22.830918867322296 0 0 0 0.4247425010840047 0 0.6989700043360187 0 DE{I|L} 3.83 - 27 NaN NaN 121062.4 NaN 5256 2388 7645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7647 41.598 NaN 101880 35 0 20923 0.261 + 16541 LTRDGHLLP 9 41 511.2927825947185 1020.571012256237 2 511.2920227050781 MULTI HCD FTMS 0 0 0 7645 35826.8046875 0.1397237158761911 9 -0.223114013671875 2 Unmodified _LTRDGHLLP_ nc|ENSG00000214655|A7E2V4-2|ZSWIM8 6.723162845929126 0.3000504726104499 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99470 NaN 5257 2388 7645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7649 41.603 NaN 946350 35 0 179460 0.327 + 2385 DPGRDYEL 8 78 482.72210693464956 963.4296609360991 2 482.72161865234375 MULTI HCD FTMS 0 0 0 7648 628077.625 0.958180878911699 -2 0.0392608642578125 1 Unmodified _DPGRDYEL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 85.64151623876279 0.017270433253960056 2 [DP]GRYDE{I|L} 8 2 + 56.987 0 0 5.915 5.915 83.847 0 0 0 7.382875826211155 7.382875826211155 7.382875826211155 0.12304505667545129 0 1.278659694992122 1.6989700043360187 1 0 [DP]GRYDE{I|L};[DP]GRDYE{I|L};[DP]GRYED{I|L};{[YD]|[{M(Oxidation (M))|F}M]}E{[NV]|[RG]}PD{I|L};[YE]D{[NV]|[RG]}PD{I|L};[DP]G{[QN]|[E{I|L}]|[KN]}Y[RD];{[YD]|[{M(Oxidation (M))|F}M]}E{I|L}{[NV]|[RG]}[DP];{[YD]|[{M(Oxidation (M))|F}M]}E{[NV]|[RG]}{I|L}[DP] 5.915;5.9022;4.8698;2.8221;1.775;1.6126;0.51714;0.33437 -;+;-;-;-;-;-;- + 444 NaN NaN 225884.6 NaN 5258 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7650 41.607 NaN 335750 35 0 116590 0.261 + 19274 NLPDNTAVI 9 32 478.75597276160033 955.4973925900007 2 478.755615234375 MULTI HCD FTMS 0 0 0 7648 194632.140625 0.3161265472908066 8 -0.2134246826171875 2 Unmodified _NLPDNTAVI_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 9.38312468134398 0.279288223203164 2 V{I|L} 2 -1 25.969 0 0 2.7179 0 0 725.3342623899877 0 725.3342623899877 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.7179 + + 2 NaN NaN 129082.8 NaN 5259 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7651 41.611 NaN 336240 35 0 45702 0.261 + 21700 QADAPNPSL 9 48 456.72446743603564 911.4343819388713 2 456.7240905761719 MULTI HCD FTMS 0 0 0 7648 152387.453125 0.49894474034892994 -4 0.0852508544921875 3 Unmodified _QADAPNPSL_ ENSG00000105011|ENST00000263382|ASF1B 69.10491478415734 0.009377850133389008 2 PS{I|L} 3 6 43.5 0 0 4.7727 0 0 596.2548946160495 0 596.2548946160495 0 39.06295947543775 0 0 0 1.305462187404089 0 0.4247425010840047 0 + PS{I|L} 4.7727 + + 27 NaN NaN 130358.5 NaN 5260 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7652 41.614 NaN 302240 35 0 35906 0.261 + 21623 PYPGAWIPF 9 67 524.268553902068 1046.522554870936 2 524.2822265625 MULTI HCD FTMS 0 0 0 7648 16498.09375 0.2554569866637134 -1 0.0096893310546875 4 Unmodified _PYPGAWIPF_ ENSG00000204564|ENST00000651131|C6orf136;nc|nan|Q5SQH8|C6orf136 20.871210003555333 0.18003371494288972 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GN{I|L}MTSE 9 7 53.08 0 0 5.072 0 0 0 51.06434982149372 51.06434982149372 13.706583010577717 0 0 0 0 0 2 0.7134679910804405 0.6549471895720984 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GN{I|L}MTSE 5.072 - 715 NaN NaN 125075.5 NaN 5261 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7653 41.618 NaN 245260 35 0 42069 0.261 -1 DMHTEVTTL 9 43 531.742144989856 1061.469737046512 2 531.7420654296875 MULTI HCD FTMS 0 0 0 7648 120930.28125 0.22833300231922293 19 -0.4860076904296875 5 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 32.30548876998284 0.10066689432505688 2 VTT{I|L} 4 -1 50.433 0 0 4.7512 0 0 629.2125111310562 0 629.2125111310562 0 39.195925227640984 0 0 0 1 0 0.8494850021680094 0 VTT{I|L} 4.7512 + + 34 NaN NaN 120646.4 NaN 5262 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7654 41.621 NaN 326020 35 0 70736 0.261 + -1 CLGCHRGCKML 11 78 464.54336203710443 1390.6082567115134 3 464.5431213378906 MULTI HCD FTMS 0 0 0 7648 63941.59765625 0.5821005384796144 3 -0.08841705322265625 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LGC(Carbamidomethyl (C))HRGC(Carbamidomethyl (C))KML_ REV__ENST00000505961.1_2_5:137356801-137369748:-|nuORF 4.715918219556657 0.3982382512160552 2 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 5 -1 36.172 0 0 2.6012 0 0 607.2732480218634 0 607.2732480218634 0 31.223637474483468 0 0 0 0.9247425010840047 0 0.3252574989159953 0 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 2.6012 - 252 + NaN NaN 131760 NaN 5263 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7655 41.624 NaN 127820 35 0 19471 0.262 + 14943 LLGEYNRNK 9 38 553.8011199172763 1105.5876869013525 2 553.8004150390625 MULTI HCD FTMS 0 0 0 7648 42642.48046875 0.4348313170083505 8 -0.2134246826171875 7 Unmodified _LLGEYNRNK_ ENST00000298139.5_1_8:30938501-30938558:+|nuORF 10.073929032068715 0.27331982688540024 2 {I|L}AVE 4 7 29.909 0 0 2.7053 0 0 0 690.3228243463499 690.3228243463499 25.305168975722765 0 0 0 0 0 0 0.4247425010840047 0 {I|L}AVE 2.7053 - 15 + NaN NaN 99442 NaN 5264 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7656 41.628 NaN 234790 35 0 28101 0.261 + 26270 SQTQKAKFS 9 57 512.7746359015881 1023.5347188699762 2 512.7744140625 MULTI HCD FTMS 0 0 0 7648 53258.9140625 0.5080957120128052 -3 0.0555877685546875 8 Unmodified _SQTQKAKFS_ ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL 13.614867670302875 0.2427269026982664 2 Q{I|L}KQSG[PG] 8 8 64.716 0 0 6.3228 0 0 210.10031934807665 0 210.10031934807665 0 55.77745672888028 0 0 0 3.024227503252014 0 0 0.3494850021680094 Q{I|L}KQSG[PG] 6.3228 - 229 + NaN NaN 128098.2 NaN 5265 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7657 41.631 NaN 127420 35 0 17262 0.261 + 14944 LLGEYNRNK 9 36 553.8011199172763 1105.5876869013525 2 554.3027954101562 MULTI HCD FTMS 0 0 0 7648 31828.46484375 0.553546340872208 7 -0.19040298461914062 9 Unmodified _LLGEYNRNK_ ENST00000298139.5_1_8:30938501-30938558:+|nuORF 13.042465956692817 0.2476723265019929 2 {I|L}AVE 4 7 29.469 0 0 2.6655 0 0 0 690.3214815729124 690.3214815729124 22.562893943202624 0 0 0 0 0 0 0.3807196863200844 0 {I|L}AVE 2.6655 - 17 + NaN NaN 104534 NaN 5266 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7658 41.634 NaN 95208 35 0 20872 0.261 + 17826 MGVRGIHPY 9 27 515.2679596723347 1028.5213664114692 2 515.2659912109375 MULTI HCD FTMS 0 0 0 7648 33030.3046875 0.1986753314396921 12 -0.3120689392089844 10 Unmodified _MGVRGIHPY_ REV__ENSG00000168702|ENST00000389484|LRP1B;REV__LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant 2.0597508629832335 0.3354026079994024 2 MP 2 -1 16.454 0 0 1.5997 0 0 0 797.4114473932249 797.4114473932249 5.484550065040281 0 0 0 0 0 0 0 0 MP 1.5997 - 5 + NaN NaN 95547.4 NaN 5267 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7659 41.638 NaN 17078 35 0 3743.5 0.261 + 30354 VLGYIYRVSSV 11 19 628.3559943392299 1254.6974357452598 2 628.3561401367188 MULTI HCD FTMS 0 0 0 7648 10724.7236328125 0.8660146418158388 -2 0.0392608642578125 11 Unmodified _VLGYIYRVSSV_ ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF;ENST00000533627.5_1_11:118404537-118405292:+|nuORF;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-3|TMEM25 1.3295316138638542 0.4130897924953357 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 94762.7 NaN 5268 2389 7648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7661 41.643 NaN 220360 35 0 27040 0.327 + -1 VSPGYETEMRF 11 69 458.5401215244804 1372.5985351736413 3 458.53961181640625 MULTI HCD FTMS 0 0 0 7660 95343.2421875 0.8049486931518447 4 -0.10176849365234375 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 5.868138319507137 0.39318500527288264 2 R{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.6727 0 0 1051.4190440621162 0 1051.4190440621162 0 5.199178382953065 0 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.6727 + + 90 + NaN NaN 119217.2 NaN 5269 2390 7660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7662 41.647 NaN 83767 35 0 31355 0.261 + 12219 KKVYATSTW 9 32 542.2948717783871 1082.5751906235741 2 542.2944946289062 MULTI HCD FTMS 0 0 0 7660 49530.12890625 0.806708005237613 -1 0.039302825927734375 2 Unmodified _KKVYATSTW_ ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E;RAET1E|p.N250Mfs*11|1|0.46|ENSG00000164520|chr6:149888541-149888541|T/-|frameshift_variant 2.9952420565917617 0.3283108881486655 2 S{[WT]|[RM]} 3 6 10.458 0 0 0.96599 0 0 690.4091053693375 0 690.4091053693375 0 10.45757490560675 0 0 0 0 0 0 0 + S{[WT]|[RM]} 0.96599 + + 1 NaN NaN 91563 NaN 5270 2390 7660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7664 41.652 NaN 3982300 35 0 462680 0.327 + 13987 KYSLIKGNF 9 128 535.3053428099587 1068.5961326867173 2 535.3056030273438 MULTI HCD FTMS 0 0 0 7663 3803291.25 0.9646460089369396 1 -0.039417266845703125 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 203.63889746883072 1.2993995354712843E-17 2 KYS{I|L}{I|L}KGN 8 1 90.728 0 0 8.4904 0 0 0 162.0560244195922 162.0560244195922 64.01412857391458 0 0 0 0 2.836696871556164 0 0.6307196863200843 2.0495462078546405 + KYS{I|L}{I|L}KGN 8.4904 + + 4226 + NaN NaN 642190.1 NaN 5271 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7665 41.656 NaN 786240 35 0 154800 0.261 -1 HPFFKDMSL 9 62 569.2734474624344 1136.5323419916688 2 569.2730712890625 MULTI HCD FTMS 0 0 0 7663 292350.1875 0.8330176899498962 1 -0.039417266845703125 2 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 38.175570920033316 0.07371992880350783 2 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 35.433 0 0 3.1176 0 0 0 605.2597139947874 605.2597139947874 4.371126462600827 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1176 + + 583 + NaN NaN 196649.8 NaN 5272 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7666 41.66 NaN 131680 35 0 11783 0.261 + 29390 TYQEVAQKF 9 52 557.282165629314 1112.549778325428 2 557.2822265625 MULTI HCD FTMS 0 0 0 7663 75262.8515625 0.6169533421608175 4 -0.11507415771484375 3 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 65.47368725323818 0.010552856507075443 2 [YT]QEVAQK{M(Oxidation (M))|F} 9 0 + 95.952 0 0 8.6245 8.6245 92.911 0 0 0 90.46774379777631 16.478174818886373 16.478174818886373 9.208187539523749 0 2.2302046884880937 2 0 0.3807196863200844 + + [YT]QEVAQK{M(Oxidation (M))|F};[YT]QEVA[AG]K{M(Oxidation (M))|F};[YT][AG]EVAQK{M(Oxidation (M))|F};[YT][AG]EVA[AG]K{M(Oxidation (M))|F};[YT]QEVA[KG]A{M(Oxidation (M))|F};[YT]QEV[KQ]A{M(Oxidation (M))|F};[YT][AG]EVA[KG]A{M(Oxidation (M))|F};[YT][AG]EV[KQ]A{M(Oxidation (M))|F} 8.6245;7.7969;7.7969;6.9731;5.6174;5.0774;4.7937;4.2497 +;-;-;-;-;-;-;- + 130 + NaN NaN 118660.2 NaN 5273 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7667 41.663 NaN 299350 35 0 19921 0.261 + 22228 QMTAYMRF 8 68 524.240944819136 1046.4673367050718 2 524.2401733398438 MULTI HCD FTMS 0 0 0 7663 54803.94921875 0.6009254376406604 -1 0.00969696044921875 4 Unmodified _QMTAYMRF_ REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF 12.531546534597751 0.5015908124873912 2 YPKE{[VA]|[{I|L}G]}P{M(Oxidation (M))|F} 8 -1 33.849 0 0 3.2346 0 0 96.9711292662375 0 96.9711292662375 0 8.992887666437142 0 0 0 0.3494850021680094 0 0 0 YPKE{[VA]|[{I|L}G]}P{M(Oxidation (M))|F} 3.2346 - 268 + NaN NaN 142251.6 NaN 5274 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7668 41.667 NaN 317200 35 0 76199 0.261 -1 0 36 582.3055966320974 1162.5966403309947 2 582.305419921875 MULTI HCD FTMS 0 0 0 7663 75039.6953125 0.22016370322632345 -3 0.058689117431640625 5 NaN NaN 2 T{I|L}VV[HV] 6 -1 12.676 0 0 1.0903 0 0 496.18805390112465 0 496.18805390112465 0 7.19151233673003 0 0 0 0 0 0 0 T{I|L}VV[HV] 1.0903 - 41 + NaN NaN 134571.9 NaN 5275 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7669 41.67 NaN 115170 35 0 11022 0.262 + 23668 RQELEQAL 8 47 493.7667032301369 985.5188535270738 2 493.766845703125 MULTI HCD FTMS 0 0 0 7663 31116.32421875 0.3949374319648598 -2 0.048999786376953125 6 Unmodified _RQELEQAL_ ENSG00000066117|ENST00000394963|SMARCD1;nc|ENSG00000066117|Q96GM5-2|SMARCD1 24.67388899826682 0.4122521268485776 2 A{I|L} 2 6 21.454 0 0 2.1769 0 0 783.3901649607451 0 783.3901649607451 0 14.882243488631097 0 0 0 0.5 0 0 0 + A{I|L} 2.1769 + + 13 NaN NaN 97868.9 NaN 5276 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7670 41.673 NaN 72679 35 0 15765 0.261 + 35414 YYEEQHPEL 9 27 604.2670384843465 1206.5195240354929 2 604.2667236328125 MULTI HCD FTMS 0 0 0 7663 64221.703125 0.029982176962515338 34 -0.8951606750488281 7 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 49.52724829834842 0.03223213920720493 2 YYEEQH 6 3 81.93 0 0 6.7906 0 0 0 354.16623865299067 354.16623865299067 77.95039703980876 0 0 0 0 1.6989700043360187 2 0.7059771852360797 0 + YYEEQH 6.7906 + + 48 + NaN NaN 101023.8 NaN 5277 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7671 41.677 NaN 106350 35 0 10149 0.264 -1 KTLDQAIMKF 10 44 404.2215517950775 1209.6428259854326 3 404.2212829589844 MULTI HCD FTMS 0 0 0 7663 10237.05078125 0.36304635970762184 1 -0.039417266845703125 8 Oxidation (M) _KTLDQAIM(Oxidation (M))KF_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 4.715918219556657 0.45034159980724314 2 {I|L}[YK]M 4 -1 18.188 0 0 1.5036 0 0 656.3482225692202 0 656.3482225692202 0 2.7030375612038426 0 0 0 0.5 0 0 0 {I|L}[YK]M 1.5036 - 13 + NaN NaN 91353.5 NaN 5278 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7672 41.68 NaN 68810 35 0 6957.9 0.261 + 3569 EIYGGSDSRF 10 39 565.7593124512613 1129.5040719693225 2 565.7588500976562 MULTI HCD FTMS 0 0 0 7663 13245.353515625 0.48885532115812275 -1 0.00969696044921875 9 Unmodified _EIYGGSDSRF_ ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1 7.101721422024254 0.4377131641736035 2 {[QN]|[E{I|L}]|[KN]}YG 4 6 33.188 0 0 2.9382 0 0 0 664.2702730768186 664.2702730768186 23.723637474483468 0 0 0 0 0 1.6989700043360187 0 0 + {[QN]|[E{I|L}]|[KN]}YG 2.9382 + + 24 + NaN NaN 89555.5 NaN 5279 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7673 41.683 NaN 51998 35 0 4313.5 0.262 -1 QANEMNDI 8 36 475.69731673337725 NaN 0 475.69775390625 PEAK HCD FTMS 0 0 0 7663 8185.2275390625 0.3859386590525762 -2 0.048999786376953125 10 Oxidation (M) _QANEM(Oxidation (M))NDI_ ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-KRT17|1|fusion;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant 2.0597508629832335 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 2.2185 0 0 0.23368 0 0 503.31673824085385 296.00461755924067 799.3213558000946 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.23368 + + 1 + NaN NaN 95211 NaN 5280 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7674 41.687 NaN 15608 35 0 4208.3 0.261 -1 0 17 646.5093383789062 NaN 0 646.5093383789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91632.1 NaN 5281 2391 7663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7676 41.692 NaN 93860 35 0 30061 0.326 -1 0 32 416.22812887769317 415.2208524110932 1 416.2275390625 MULTI HCD FTMS 0 0 0 7675 37946.69921875 0.8317605322730387 73 -1.9157218933105469 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 100664.4 NaN 5282 2392 7675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7677 41.696 NaN 122410 35 0 13895 0.261 + 19012 NAVEQDYRL 9 49 554.2746737990543 1106.5347946649085 2 554.2734375 MULTI HCD FTMS 0 0 0 7675 37941.78125 0.8662037446599642 -1 0.039417266845703125 2 Unmodified _NAVEQDYRL_ ENSG00000182580|ENST00000330394|EPHB3 22.65808497894818 0.16459551161911185 2 C(Carbamidomethyl (C))YR{I|L} 4 6 19.623 0 0 1.7733 0 0 496.25193984199376 0 496.25193984199376 0 1.435078169319297 0 0 0 0.6435078169319297 0 0 0 C(Carbamidomethyl (C))YR{I|L} 1.7733 - 39 NaN NaN 109487 NaN 5283 2392 7675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7678 41.7 NaN 118990 35 0 17076 0.261 -1 IDCHTTSI 8 47 473.71864276789495 945.4227326025899 2 473.7216491699219 MULTI HCD FTMS 0 0 0 7675 40416.02734375 0.05101117213616317 -7 0.17366790771484375 3 Carbamidomethyl (C) _IDC(Carbamidomethyl (C))HTTSI_ ENSG00000185238|ENST00000331079|PRMT3;nc|ENSG00000185238|O60678-2|PRMT3 16.942295170755138 0.46913822049235215 2 VTM 3 -1 26.669 0 0 2.8208 0 0 596.2518177716812 0 596.2518177716812 0 -1.5186375580366729 -1.5186375580366729 0 0 0.8252574989159953 0 0 0 VTM 2.8208 - 93 NaN NaN 113996 NaN 5284 2392 7675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7679 41.703 NaN 66296 35 0 9587.2 0.261 + -1 VKVELMMLS 9 37 546.2959577123054 NaN 0 546.3130493164062 PEAK HCD FTMS 0 0 0 7675 8724.294921875 0.6904379933575214 2 -0.052654266357421875 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VKVELMMLS_ REV__ENST00000477375.5_1_2:131102219-131102954:+|nuORF 4.3292370932331545 0.2742679634796037 2 ST 2 -1 10.969 0 0 1.0058 0 0 130.1514724541044 769.3303927057249 899.4818651598293 0 0 0 0 0 0 0 0 0 ST 1.0058 - 6 + NaN NaN 113254.3 NaN 5285 2392 7675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7680 41.706 NaN 24934 35 0 3941.1 0.261 -1 0 17 599.0576240928799 NaN 0 598.798828125 PEAK HCD FTMS 0 0 0 7675 4792.08349609375 0.5317620157286724 -1 0.039417266845703125 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90774.3 NaN 5286 2392 7675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7682 41.711 NaN 904150 35 0 109200 0.327 + 24511 RYLEKPMEI 9 95 589.8153497983772 1177.6161466635542 2 589.815185546875 MULTI HCD FTMS 0 0 0 7681 443675.28125 0.8280259208761477 -1 0.0196533203125 1 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 121.34585337138759 0.001129813327125052 2 [YR]{I|L}EKPME{I|L} 9 0 + 88.264 0 0 7.4951 7.4951 89.148 0 0 0 7.698449508402618 54.31876618509466 7.698449508402618 6.342619253686365 0 2.0189301784845295 0 1.0501648626366045 1.1989700043360187 + + [YR]{I|L}EKPME{I|L};[YR]{I|L}EKEMP{I|L};[YR]{I|L}EKMPE{I|L};[YR]{I|L}EKMEP{I|L};{I|L}[YR]EKPME{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KPME{I|L};[VP][HV]EKPME{I|L};{I|L}[YR]EK{I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YR]{I|L}T[VG]PME{I|L};{[QN]|[E{I|L}]|[KN]}[YR]KEMP{I|L} 7.4951;6.9565;6.6669;5.9384;5.8587;5.8206;5.8001;5.3687;5.3344;5.282 +;-;-;-;-;-;-;-;-;- + 3919 NaN NaN 217080.6 NaN 5287 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7683 41.716 NaN 842410 35 0 98163 0.263 + 24893 RYQQWMERF 9 89 453.88003143201183 1358.6182648962356 3 453.8799133300781 MULTI HCD FTMS 0 0 0 7681 324711.53125 0.5547441798882479 7 -0.18434906005859375 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 55.23464941255904 0.024247875903973527 2 [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 9 0 [YR]Q + + 50.379 9.705 2.17 3.7081 3.7081 60.646 0 0 0 0 40.673975015984716 0 0 0 0.8494850021680094 0 0.3252574989159953 0.5010912013506126 + + [YR]QQW{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 3.7081 + + 552 + NaN NaN 208108.2 NaN 5288 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7684 41.719 NaN 157270 35 0 20960 0.261 + 974 AYFKRYQVKF 10 44 450.58343936858057 1348.7284887059418 3 450.5830993652344 MULTI HCD FTMS 0 0 0 7681 74762.65625 0.7409978733987771 1 -0.033000946044921875 3 Unmodified _AYFKRYQVKF_ ENSG00000122406|ENST00000370321|RPL5 16.565877749689598 0.3561603856738253 2 AY{M(Oxidation (M))|F} 3 7 48.94 0 0 3.6286 0 0 0 964.5370354090392 964.5370354090392 30.088643834802156 0 0 0 0 0.4247425010840047 2 0 0 + AY{M(Oxidation (M))|F} 3.6286 + + 19 + NaN NaN 98357.4 NaN 5289 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7685 41.723 NaN 103200 35 0 23583 0.261 + 30993 VSEAEHPLL 9 22 497.76349642032295 993.5124399074459 2 497.7633972167969 MULTI HCD FTMS 0 0 0 7681 49790.625 0.332408828017393 5 -0.13168716430664062 4 Unmodified _VSEAEHPLL_ ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 9 10.485 0 0 1.0553 0 0 652.280946842796 191.13282190494377 843.4137687477397 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.0553 - 1 + NaN NaN 95782.8 NaN 5290 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7686 41.726 NaN 185130 35 0 33470 0.261 -1 0 61 560.826996754403 1119.639440575606 2 560.8270263671875 MULTI HCD FTMS 0 0 0 7681 60331.5625 0.0519003003244545 14 -0.3453025817871094 5 NaN NaN 2 S{I|L} 2 -1 17.959 0 0 1.604 0 0 901.5132339686814 0 901.5132339686814 0 3.5699180819254615 0 0 0 0 0 0 0 S{I|L} 1.604 - 115 NaN NaN 111107.8 NaN 5291 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7687 41.729 NaN 91446 35 0 15059 0.261 + 15625 LPEEEQQRVL 10 34 620.8302435521206 1239.645934171041 2 620.8302001953125 MULTI HCD FTMS 0 0 0 7681 55361.2265625 0.06474658853722193 12 -0.30591583251953125 6 Unmodified _LPEEEQQRVL_ ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF 21.799462835604743 0.30720719660089946 2 {I|L}PEEEQQ 7 3 52.511 0 0 4.236 0 0 0 383.2407320611938 383.2407320611938 43.04699171237935 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 + {I|L}PEEEQQ 4.236 + + 36 + NaN NaN 94672.8 NaN 5292 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7688 41.733 NaN 58027 35 0 7868.5 0.261 + 11922 KFIDTTSKF 9 36 543.7950986694144 1085.5756444056287 2 543.7945556640625 MULTI HCD FTMS 0 0 0 7681 35130.53125 0.004210637932563692 92 -2.460407257080078 7 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 14.957161354070239 0.23112978309247678 2 K{M(Oxidation (M))|F}{I|L}D 4 5 38.928 0 0 3.5859 0 0 0 579.2770479791624 579.2770479791624 15.740312677277188 0 0 0 0 0.5 0 0.5 0 + K{M(Oxidation (M))|F}{I|L}D 3.5859 + + 18 + NaN NaN 95706.2 NaN 5293 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7689 41.736 NaN 112490 35 0 10944 0.261 + 23597 RPFEDQTSL 9 39 546.7695232353086 1091.5244935374171 2 546.7684936523438 MULTI HCD FTMS 0 0 0 7681 41453.96484375 0.9443646811205285 -1 0.0196533203125 8 Unmodified _RPFEDQTSL_ ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF;RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant 12.240655878213236 0.2545997876781172 2 TS{I|L} 3 6 35.445 0 0 3.2473 0 0 772.3517448430381 0 772.3517448430381 0 17.486512420283233 0 0 0 0.5 0 0.4247425010840047 0 + TS{I|L} 3.2473 + + 16 NaN NaN 100738.2 NaN 5294 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7690 41.739 NaN 15177 35 0 4052.1 0.261 + 12341 KMWLIKLVLF 10 15 645.9043579101562 NaN 0 645.9043579101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _KMWLIKLVLF_ REV__ENST00000170564.6_1_19:33572049-33584283:+|nuORF;REV__ENST00000592165.1_1_19:33572115-33586722:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96339.4 NaN 5295 2393 7681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7692 41.744 NaN 446630 35 0 92910 0.327 + 2386 DPGRDYEL 8 65 482.72210693464956 963.4296609360991 2 482.7216491699219 MULTI HCD FTMS 0 0 0 7691 283172.3125 0.432001212071053 3 -0.07235336303710938 1 Unmodified _DPGRDYEL_ ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF 49.93300154707207 0.1281809856024636 2 KDE{I|L} 4 5 38.844 0 0 4.0319 0 0 460.17747695136876 0 460.17747695136876 0 17.417665879116626 0 0 0 0.3807196863200844 0 0.6989700043360187 0 KDE{I|L} 4.0319 - 167 NaN NaN 152923.6 NaN 5296 2394 7691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7693 41.749 NaN 401190 35 0 53194 0.261 -1 RYLSPKYIKMF 11 77 487.9355264321726 1460.7847498967178 3 488.26959228515625 MULTI HCD FTMS 0 0 0 7691 112778.390625 0.240273311329803 -5 0.14107131958007812 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 36.95490438235368 0.1565614352030347 2 [Y{I|L}]RSPKY{I|L}KET 11 -1 69.606 0 0 4.765 0 0 0 78.9890805394356 78.9890805394356 61.82103925066964 0 0 0 0 1.9247425010840047 1.2218487496163564 0.9247425010840047 0 [Y{I|L}]RSPKY{I|L}KET 4.765 - 300 NaN NaN 145098.9 NaN 5297 2394 7691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7694 41.752 NaN 267360 35 0 30797 0.261 + 21076 PMERPIAAY 9 72 524.268553902068 1046.522554870936 2 524.267578125 MULTI HCD FTMS 0 0 0 7691 53174.66796875 0.8233581801618964 4 -0.09868621826171875 3 Unmodified _PMERPIAAY_ REV__ENSG00000176903|ENST00000316836|PNMA1 21.74664581756881 0.17247014374749275 2 PYPKE{I|L} 6 -1 74.117 0 0 7.0823 0 0 0 316.1410311334594 316.1410311334594 53.148350154927826 0 0 0 0 1.9247425010840047 2 0 0 PYPKE{I|L} 7.0823 - 193 + NaN NaN 127244 NaN 5298 2394 7691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7695 41.756 NaN 386820 35 0 99064 0.261 + 18828 NADPQAVTM 9 62 473.71864276789495 945.4227326025899 2 473.7190856933594 MULTI HCD FTMS 0 0 0 7691 132103.359375 0.16673452706097402 -5 0.14107131958007812 4 Unmodified _NADPQAVTM_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 55.23464941255904 0.024247875903973527 2 {[QG]|[NA]}D[QP]AVTM 9 0 + 71.388 0 0 7.5509 7.5509 93.862 0 0 0 5.008199034410211 5.008199034410211 5.008199034410211 17.58355938871737 0 2.6549471895720984 0.8860566476931632 0 0.555462187404089 + + {[QG]|[NA]}D[QP]AVTM;{[QG]|[NA]}D[QP]AMS{I|L};{[QG]|[NA]}D[QP]AS{I|L}M;{[QG]|[NA]}D[QP]T{[VA]|[{I|L}G]}M;{[WN]|[YH]}YYTS{I|L} 7.5509;5.691;5.6645;4.5382;1.7378 +;-;-;-;- + 297 NaN NaN 150106 NaN 5299 2394 7691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7696 41.759 NaN 204390 35 0 31359 0.261 + 22037 QGELHSSVL 9 46 485.2537262478396 968.4928995624792 2 485.2533264160156 MULTI HCD FTMS 0 0 0 7691 78154.375 0.3055392815232079 -6 0.15076065063476562 5 Unmodified _QGELHSSVL_ REV__ENSG00000277481|ENST00000620267|PKD1L3 20.453626601364224 0.18364154288633264 2 {[QG]|[NA]}A{M(Oxidation (M))|F}[YT]AV 8 -1 44.218 0 0 4.5657 0 0 0 128.07205598593683 128.07205598593683 31.60396270529162 0 0 0 0 0.5 1.6989700043360187 0 0.7614393726401688 {[QG]|[NA]}A{M(Oxidation (M))|F}[YT]AV 4.5657 - 110 NaN NaN 125691.8 NaN 5300 2394 7691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7697 41.762 NaN 149580 35 0 19049 0.261 + 923 AYCVKAQTF 9 57 515.7546970600578 1029.4948411869154 2 515.7549438476562 MULTI HCD FTMS 0 0 0 7691 46651.640625 0.8324633682367256 -1 0.033000946044921875 6 Unmodified _AYCVKAQTF_ ENSG00000174564|ENST00000329582|IL20RB;ENST00000475972.1_1_3:136705553-136729062:+|nuORF;NR4A1-IL20RB|1|fusion 47.748688679222035 0.03472022231463587 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}CV 4 5 41.414 0 0 4.0228 0 0 0 590.292820273106 590.292820273106 11.409328277719766 0 0 0 0 1.4247425010840047 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}CV 4.0228 + + 45 NaN NaN 102709.2 NaN 5301 2394 7691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7699 41.767 NaN 266690 35 0 39948 0.327 + 21701 QADAPNPSL 9 33 456.72446743603564 911.4343819388713 2 456.72412109375 MULTI HCD FTMS 0 0 0 7698 152456.40625 0.49917050564878795 2 -0.049350738525390625 1 Unmodified _QADAPNPSL_ ENSG00000105011|ENST00000263382|ASF1B 49.93300154707207 0.03166451819912738 2 {I|L} 1 8 19.604 0 0 2.1509 0 0 780.3399738351588 0 780.3399738351588 0 10 0 0 0 0.5 0 0 0 + {I|L} 2.1509 + + 12 + NaN NaN 123713.8 NaN 5302 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7700 41.772 NaN 257790 35 0 23805 0.261 + 12832 KYFDNSQSL 9 58 551.2639468515885 1100.5133407699768 2 551.263427734375 MULTI HCD FTMS 0 0 0 7698 137066.796875 0.8401146779963031 2 -0.049350738525390625 2 Unmodified _KYFDNSQSL_ nc|ENSG00000052841|Q96AE7-2|TTC17 79.59630418116434 0.005983006570063981 2 [YK]{M(Oxidation (M))|F}[DN]SQS{I|L} 9 0 + 65.2 0 0 5.9245 5.9245 88.417 0 0 0 3.5641488587102543 54.397737521010825 3.5641488587102543 9.208187539523749 0 1.3252574989159953 0 0.7614393726401688 1.4489700043360187 + + [YK]{M(Oxidation (M))|F}[DN]SQS{I|L};[YK]{M(Oxidation (M))|F}[DN]S[AG]S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}QS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TNS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}QS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TSN{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[AG]S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TNS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[AG]S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TSN{I|L};{[MS]|[{M(Oxidation (M))|F}A]}QS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TGGS{I|L} 5.9245;5.0878;3.6987;3.6511;2.866;2.8184;2.2529 +;-;-;-;-;-;- + 581 NaN NaN 143278.6 NaN 5303 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7701 41.775 NaN 140640 35 0 42663 0.261 + 3776 EPDDRIVL 8 30 478.75597276160033 955.4973925900007 2 478.7556457519531 MULTI HCD FTMS 0 0 0 7698 70590.0625 0.11465420181635143 14 -0.338348388671875 3 Unmodified _EPDDRIVL_ REV__ENSG00000167693|ENST00000336868|NXN;REV__ENST00000575171.1_1_17:729096-882585:-|nuORF;REV__ENST00000575455.5_1_17:722628-800182:-|nuORF;REV__nc|ENSG00000167693|Q6DKJ4-2|NXN;REV__nc|ENSG00000167693|Q6DKJ4-3|NXN 7.289230182591677 0.5311777711368266 2 V{I|L} 2 -1 25.969 0 0 2.7179 0 0 725.3337710622551 0 725.3337710622551 0 24.85985638199878 0 0 0 0.5 0 0 0 V{I|L} 2.7179 + + 4 NaN NaN 106816.3 NaN 5304 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7702 41.779 NaN 163450 35 0 28170 0.261 + 27941 TEPQSWTLT 9 40 531.7598664177824 NaN 0 531.7423095703125 PEAK HCD FTMS 0 0 0 7698 4964.84228515625 1 0 0 4 Unmodified _TEPQSWTLT_ REV__ENSG00000136933|ENST00000373538|RABEPK;REV__nc|ENSG00000136933|Q7Z6M1-2|RABEPK 7.910154910731844 0.25691533546754686 2 TTV 3 -1 23.188 0 0 2.1844 0 0 131.13166239024685 626.1878756158811 757.3195380061279 0 0 0 0 0 0 0 0.8494850021680094 0 TTV 2.1844 - 19 + NaN NaN 109425.3 NaN 5305 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7703 41.782 NaN 78584 35 0 10920 0.261 + 17710 MAVIDGNVM 9 42 491.22239725300005 980.4302415728001 2 491.2217102050781 MULTI HCD FTMS 0 0 0 7698 56199.21484375 0.9068604975271393 2 -0.049350738525390625 5 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 43.85829265575387 0.04763305254408404 2 {I|L}AV{M(Oxidation (M))|F} 4 6 37.423 0 0 3.817 0 0 532.1945667951187 0 532.1945667951187 0 21.18562527100117 0 0 0 1 0 0 0 {I|L}AV{M(Oxidation (M))|F} 3.817 - 15 NaN NaN 94046.3 NaN 5306 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7704 41.785 NaN 121880 35 0 12735 0.261 + 23598 RPFEDQTSL 9 51 546.7695232353086 1091.5244935374171 2 546.7701416015625 MULTI HCD FTMS 0 0 0 7698 41096.48046875 0.9362208131196044 1 -0.02632904052734375 6 Unmodified _RPFEDQTSL_ ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF;RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant 20.41453444215458 0.18397929046831515 2 QTS{I|L} 4 5 38.844 0 0 3.5587 0 0 644.2962513654312 0 644.2962513654312 0 20.885540741363187 0 0 0 0.5 0 0.8807196863200843 0 + QTS{I|L} 3.5587 + + 26 NaN NaN 98619.9 NaN 5307 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7705 41.789 NaN 117670 35 0 10531 0.261 + 27653 TAKLDYSKV 9 52 512.7865050890059 NaN 0 512.7742919921875 PEAK HCD FTMS 0 0 0 7698 4623.2646484375 0.33933606371074965 1 -0.02632904052734375 7 Unmodified _TAKLDYSKV_ ENST00000550339.1_1_12:52449819-52450525:+|nuORF;ENST00000564201.1_1_12:52449860-52450525:+|nuORF 6.2057823575117 0.2651744870083793 2 K{I|L} 2 7 9.464 0 0 0.92461 0 0 444.22088507859934 335.13596521549067 779.35685029409 0 0 0 0 0 0 0 0 0 + K{I|L} 0.92461 + + 33 + NaN NaN 116807.5 NaN 5308 2395 7698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7707 41.794 NaN 1158300 35 0 143290 0.327 + 13988 KYSLIKGNF 9 95 535.3053428099587 1068.5961326867173 2 535.3053588867188 MULTI HCD FTMS 0 0 0 7706 874411.75 0.22178101790260346 6 -0.15128707885742188 1 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 209.87028166699892 5.4766109851150774E-18 2 KYS{I|L}{I|L}KGN{M(Oxidation (M))|F} 9 0 + 93.099 0 0 8.7123 8.7123 95.632 0 0 0 67.93790077807033 12.45818696247305 12.45818696247305 17.696051412284987 0 2.4628493362984765 0 0.6237125054200234 1.8411290632962718 + + KYS{I|L}{I|L}KGN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}KGN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}KGGG{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GKN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GNK{M(Oxidation (M))|F};KYS{I|L}[KA]VN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GN{M(Oxidation (M))|F}K;KYS[KA]{I|L}VN{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GKGG{M(Oxidation (M))|F};[YK]S{I|L}{I|L}GGGK{M(Oxidation (M))|F} 8.7123;7.0563;6.1946;6.071;5.837;5.6256;5.4866;5.3051;5.2093;4.9753 +;+;-;-;-;-;-;-;-;- + 2301 + NaN NaN 268432.1 NaN 5309 2396 7706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7708 41.798 NaN 669530 35 0 146320 0.261 + 8901 HPDEDISL 8 47 463.2166930047771 924.4188330763542 2 463.2163391113281 MULTI HCD FTMS 0 0 0 7706 388428.84375 0.800376140094574 -4 0.10198593139648438 2 Unmodified _HPDEDISL_ ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670|ZNF207 32.116972079565 0.3321965280364247 2 {I|L}S{I|L} 3 5 39.693 0 0 4.2938 0 0 593.2059193341812 0 593.2059193341812 0 26.593793813122062 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + {I|L}S{I|L} 4.2938 + + 16 NaN NaN 194073.9 NaN 5310 2396 7706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7709 41.802 NaN 637270 35 0 138240 0.261 + 9084 HPFFKDMSL 9 57 569.2734474624344 1136.5323419916688 2 569.2731323242188 MULTI HCD FTMS 0 0 0 7706 280785.40625 0.8000651974475582 6 -0.15128707885742188 3 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 47.748688679222035 0.03472022231463587 2 HYV{[WT]|[RM]}SQ 7 6 33.153 0 0 2.917 0 0 0 232.09150110416252 232.09150110416252 4.965146482263151 0 0 0 0 0.3054621874040891 0 0.28872548999643577 0 HYV{[WT]|[RM]}SQ 2.917 - 197 + NaN NaN 182470.7 NaN 5311 2396 7706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7710 41.805 NaN 305520 35 0 41698 0.263 -1 0 56 438.2635523618724 874.5125517905449 2 438.26312255859375 MULTI HCD FTMS 0 0 0 7706 139927.765625 0.5455789646766657 -7 0.19040298461914062 4 NaN NaN 2 HC(Carbamidomethyl (C)){I|L} 3 -1 6.8226 0 0 0.78016 0 0 271.2211959738452 190.10972009830314 461.3309160721484 0 0 0 0 0 0 0 0 0 HC(Carbamidomethyl (C)){I|L} 0.78016 - 14 + NaN NaN 125093.8 NaN 5312 2396 7706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7711 41.808 NaN 126970 35 0 13294 0.261 + -1 VSPGYETEMRF 11 57 458.5401215244804 1372.5985351736413 3 458.8739929199219 MULTI HCD FTMS 0 0 0 7706 40504.03125 0.40410543982156283 9 -0.22358322143554688 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 3.5926746625661337 0.403164415885289 2 R{M(Oxidation (M))|F} 2 -1 21.198 0 0 1.5444 0 0 1051.4191023057217 0 1051.4191023057217 0 7.2184874961635614 0 0 0 0.5 0 0 0 R{M(Oxidation (M))|F} 1.5444 + + 30 + NaN NaN 118675.4 NaN 5313 2396 7706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7712 41.812 NaN 62949 35 0 13680 0.261 + -1 CIYGMVPVLF 10 34 579.2925886977243 NaN 0 579.292724609375 PEAK HCD FTMS 0 0 0 7706 22762.109375 0.6451253627453195 5 -0.12166595458984375 6 Oxidation (M) _CIYGM(Oxidation (M))VPVLF_ REV__ENSG00000148337|ENST00000372938|CIZ1;REV__ENST00000461765.5_1_9:130928478-130929943:-|nuORF;REV__ENST00000485001.1_1_9:130928995-130929187:-|nuORF;REV__ENST00000485862.5_1_9:130928478-130929503:-|nuORF;REV__nc|ENSG00000148337|Q9ULV3-2|CIZ1;REV__nc|ENSG00000148337|Q9ULV3-3|CIZ1;REV__nc|ENSG00000148337|Q9ULV3-4|CIZ1;REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1 1.844237919475145 0.33860587697544825 2 {M(Oxidation (M))|F} 1 -1 1.1092 0 0 0.095908 0 0 719.4734392589268 287.0393160455688 1006.5127553044956 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.095908 + + 1 + NaN NaN 97388.4 NaN 5314 2396 7706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7714 41.817 NaN 446160 35 0 109340 0.327 -1 0 33 582.3055966320974 1162.5966403309947 2 582.3053588867188 MULTI HCD FTMS 0 0 0 7713 207296.546875 0.6082004362619878 3 -0.0789947509765625 1 NaN NaN 2 Y[TA]T{I|L}VV[HV] 9 -1 17.381 0 0 1.495 0 0 161.06058183665715 0 161.06058183665715 0 5.865743447727642 0 0 0 0 0 0.4247425010840047 0 Y[TA]T{I|L}VV[HV] 1.495 - 71 + NaN NaN 148760 NaN 5315 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7715 41.821 NaN 268020 35 0 37855 0.261 + 3045 EAFPHDSQL 9 56 522.2432950106739 1042.4720370881478 2 522.24267578125 MULTI HCD FTMS 0 0 0 7713 113289.5546875 0.375193210339008 -5 0.12500762939453125 2 Unmodified _EAFPHDSQL_ ENSG00000071894|ENST00000616140|CPSF1 38.175570920033316 0.07371992880350783 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))E]|[WC]}Q{I|L} 6 6 17.211 0 0 1.6509 0 0 200.07905776191564 0 200.07905776191564 0 4.446425923700097 0 0 0 1 0 1 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))E]|[WC]}Q{I|L} 1.6509 - 117 NaN NaN 148271.5 NaN 5316 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7716 41.825 NaN 58179 35 0 6374.2 0.261 + 29391 TYQEVAQKF 9 35 557.282165629314 1112.549778325428 2 557.2821655273438 MULTI HCD FTMS 0 0 0 7713 30853.41015625 0.25291513831561047 10 -0.23994827270507812 3 Unmodified _TYQEVAQKF_ ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2 28.494509381512117 0.11816142465008336 2 AQK{M(Oxidation (M))|F} 4 5 38.175 0 0 3.4313 0 0 620.2841053693375 0 620.2841053693375 0 0.41570352387367393 0 0 0 0.9247425010840047 0 0 0 + AQK{M(Oxidation (M))|F} 3.4313 + + 19 NaN NaN 105434.2 NaN 5317 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7717 41.828 NaN 64561 35 0 15329 0.261 + 35415 YYEEQHPEL 9 28 604.2670384843465 1206.5195240354929 2 604.26708984375 MULTI HCD FTMS 0 0 0 7713 31379.451171875 0.014649631078617794 40 -1.0369415283203125 4 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 27.628801355627647 0.12213550946336599 2 YYEEQH 6 3 43.645 0 0 3.6174 0 0 0 354.1665438287719 354.1665438287719 36.655462488490684 0 0 0 0 1.1677353201839438 2 0.3807196863200844 0 + YYEEQH 3.6174 + + 8 + NaN NaN 109599.7 NaN 5318 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7718 41.831 NaN 40317 35 0 5170 0.262 + 431 ALDQAREIA 9 30 493.7667032301369 985.5188535270738 2 493.7665100097656 MULTI HCD FTMS 0 0 0 7713 17455.193359375 0.22154638804179969 4 -0.09864425659179688 5 Unmodified _ALDQAREIA_ REV__ENSG00000165917|ENST00000298854|RAPSN 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 101430.4 NaN 5319 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7719 41.835 NaN 74454 35 0 6838 0.262 -1 YYMMFKKAI 9 46 404.20588509109785 1209.5958258734936 3 404.2210693359375 MULTI HCD FTMS 0 0 0 7713 3180.220458984375 0.06621867594603024 11 -0.2725830078125 6 Oxidation (M) _YYM(Oxidation (M))MFKKAI_ ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11 2.735195868890462 0.3302822318919627 2 M 1 -1 13.495 0 0 1.1156 0 0 1060.5453020471248 0 1060.5453020471248 0 6.505149978319906 0 0 0 0 0 0 0 M 1.1156 + + 11 + NaN NaN 109826.9 NaN 5320 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7720 41.838 NaN 32766 35 0 4085.9 0.261 + -1 WYILWLYP 8 25 598.3137817382812 NaN 0 598.3137817382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WYILWLYP_ REV__ENST00000546771.1_1_12:72008984-72013729:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102535.4 NaN 5321 2397 7713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7722 41.843 NaN 458850 35 0 38148 0.327 + -1 MIEVAIDQF 9 72 541.2638656796013 1080.5131784260025 2 541.2763671875 MULTI HCD FTMS 0 0 0 7721 11022.4384765625 0.8955299894856139 1 -0.0196685791015625 1 Oxidation (M) _M(Oxidation (M))IEVAIDQF_ REV__tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 20.453626601364224 0.18364154288633264 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATH{I|L}{[MG]|[TS]}A{M(Oxidation (M))|F} 10 -1 + 53.427 0 0 4.9446 4.9446 82.569 0 0 0 1.0526595187979382 0.7403126772771884 0.7403126772771884 0.7403126772771884 0 0 2 1.2614393726401687 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATH{I|L}{[MG]|[TS]}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATH[YR]AE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]AYA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATH{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT[{I|L}A]{[QG]|[NA]}ASE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT[{I|L}A]QQSE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]H[YV]K{M(Oxidation (M))|F};AYA{[QG]|[NA]}[{I|L}A]TA{[ES]|[DT]|[{I|L}C]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[WD]NK{M(Oxidation (M))|F} 4.9446;4.876;4.8471;4.8471;4.7816;4.7009;4.3709;4.2551;4.2382;4.0712 -;-;-;-;-;-;-;-;-;- 1238 NaN NaN 155282.5 NaN 5322 2398 7721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7723 41.848 NaN 168460 35 0 25663 0.261 + 33053 YDEEADEE 8 44 500.17420449851664 998.3338560638333 2 500.173583984375 MULTI HCD FTMS 0 0 0 7721 98383.3359375 0.984223588649406 -2 0.04935455322265625 2 Unmodified _YDEEADEE_ REV__ENSG00000180900|ENST00000356994|SCRIB;REV__nc|ENSG00000180900|Q14160-2|SCRIB;REV__nc|ENSG00000180900|Q14160|SCRIB 2.577480529830294 0.5381683276125971 2 V[MT] 3 -1 9.437 0 0 0.94527 0 0 649.1672230451187 0 649.1672230451187 0 3.9524249272868435 0 0 0 0.5 0 0 0 V[MT] 0.94527 - 24 NaN NaN 106074.7 NaN 5323 2398 7721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7724 41.851 NaN 149300 35 0 18038 0.261 + 34418 YPESESIMM 9 40 559.723010978105 1117.4314690230099 2 559.7220458984375 MULTI HCD FTMS 0 0 0 7721 58132.60546875 0.4045343619484741 -11 0.2790184020996094 3 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 71.13359017698441 0.008721403657255008 2 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 75.878 0 0 6.7904 0 0 389.1569081037125 0 389.1569081037125 0 68.88866283220501 0 0 0 2.4247425010840047 0 1.1989700043360187 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7904 + + 119 NaN NaN 106947.4 NaN 5324 2398 7721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7725 41.854 NaN 219120 35 0 22356 0.261 + -1 VCHLWASF 8 39 510.2433429509052 NaN 0 510.2437438964844 PEAK HCD FTMS 0 0 0 7721 36833.984375 0.9265231157667027 -2 0.04935455322265625 4 Carbamidomethyl (C) _VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 34.18733598223924 0.36535021990301164 2 TSAA{[ET]|[MV]}AAS 9 -1 37.674 0 0 3.6991 0 0 64.03446675873734 162.05610071353752 226.09056747227487 0 0 0 0 0 0 0 1.6237125054200234 0 TSAA{[ET]|[MV]}AAS 3.6991 - 160 + NaN NaN 113233.5 NaN 5325 2398 7721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7726 41.858 NaN 251210 35 0 32172 0.261 -1 AIASGSCELC 10 67 505.7176962088947 1009.4208394845895 2 505.718017578125 MULTI HCD FTMS 0 0 0 7721 37590.33984375 1 0 0 5 Carbamidomethyl (C) _AIASGSC(Carbamidomethyl (C))ELC_ ENST00000409716.6_2_2:73961700-73964524:-|nuORF 6.723162845929126 0.4397169348982109 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 -1 + 17.782 0 0 1.7616 1.7616 83.206 0 0 0 3.959354596443042 0.6694678963061342 0.6694678963061342 8.327935343467116 0 0 2 0.28872548999643577 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][EP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.7616;0.93656;0.93656 -;-;- 60 NaN NaN 128751.1 NaN 5326 2398 7721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7728 41.863 NaN 390450 35 0 51277 0.327 + 24512 RYLEKPMEI 9 65 589.8153497983772 1177.6161466635542 2 589.8152465820312 MULTI HCD FTMS 0 0 0 7727 250463.671875 0.4674373834080218 5 -0.13154220581054688 1 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 85.76441949171179 0.004636955403846499 2 {I|L}{M(Oxidation (M))|F}VEKE{I|L} 7 5 81.516 0 0 6.9221 0 0 0 316.14154993228755 316.14154993228755 48.80796983517129 0 0 0 0 2.2059771852360797 0 0.9247425010840047 0.4247425010840047 {I|L}{M(Oxidation (M))|F}VEKE{I|L} 6.9221 - 1396 + NaN NaN 139778.2 NaN 5327 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7729 41.867 NaN 527290 35 0 65332 0.263 + 24894 RYQQWMERF 9 79 453.88003143201183 1358.6182648962356 3 453.87994384765625 MULTI HCD FTMS 0 0 0 7727 223976.75 0.3826467080318236 13 -0.32871246337890625 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 40.72490554402381 0.06201705472789164 2 W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 5 4 44.385 0 0 3.2669 0 0 575.2820288486096 0 575.2820288486096 0 34.94464103855016 0 0 0 1.274227503252014 0 0.6694451763165201 0 + W{M(Oxidation (M))|F}ER{M(Oxidation (M))|F} 3.2669 + + 192 + NaN NaN 163918.8 NaN 5328 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7730 41.871 NaN 560560 35 0 63257 0.261 + 18986 NASEDRLEL 9 83 523.7591134274433 1045.5036739216864 2 523.7589721679688 MULTI HCD FTMS 0 0 0 7727 289491.34375 0.6463535749082282 -2 0.046001434326171875 3 Unmodified _NASEDRLEL_ ENSG00000175073|ENST00000310421|VCPIP1 110.79276546118962 0.0028129822227594098 2 {[QG]|[NA]}SEDR{I|L}E{I|L} 9 0 + 77.845 0 0 7.4457 7.4457 96.264 0 0 0 2.730137751180024 2.730137751180024 2.730137751180024 77.84494693774263 0 2.3667053245199625 1.6989700043360187 0.7742275032520141 1.0114393726401687 + + {[QG]|[NA]}SEDR{I|L}E{I|L} 7.4457 + + 413 NaN NaN 173467.6 NaN 5329 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7731 41.874 NaN 220930 35 0 16831 0.262 + 5144 FEWLKQCRF 9 63 419.54488364480466 NaN 0 419.5558776855469 PEAK HCD FTMS 0 0 0 7727 4967.8564453125 0.6195047199150512 -1 0.0196685791015625 4 Unmodified _FEWLKQCRF_ ENSG00000039139|ENST00000265104|DNAH5 6.630372943996041 0.2631169802796071 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.83501 0 0 65.71197646011679 621.2744234674436 686.9863999275605 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.83501 + + 10 + NaN NaN 111860.8 NaN 5330 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7732 41.877 NaN 56744 35 0 6413.2 0.261 + 11923 KFIDTTSKF 9 33 543.7950986694144 1085.5756444056287 2 543.7947998046875 MULTI HCD FTMS 0 0 0 7727 48645.74609375 0.005830530210390877 98 -2.661773681640625 5 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 19.625955294349634 0.19079243933902879 2 K{M(Oxidation (M))|F}{I|L}D 4 5 38.175 0 0 3.5166 0 0 0 579.2781466119749 579.2781466119749 11.977437731477423 0 0 0 0 0.5 0 0.4247425010840047 0 + K{M(Oxidation (M))|F}{I|L}D 3.5166 + + 10 + NaN NaN 90144 NaN 5331 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7733 41.881 NaN 328780 35 0 37607 0.261 + 19078 NEPGAVGAASF 11 38 510.2433429509052 NaN 0 510.233154296875 PEAK HCD FTMS 0 0 0 7727 32307.9375 0.812674800850835 -1 0.0196685791015625 6 Unmodified _NEPGAVGAASF_ REV__ENST00000506800.5_1_13:36801340-36814747:-|nuORF;REV__nc|ENSG00000242715|A6NNP5-3|CCDC169;REV__nc|ENSG00000242715|A6NNP5-4|CCDC169;REV__nc|ENSG00000242715|A6NNP5-6|CCDC169 27.628801355627647 0.19725092517468332 2 SAA{M(Oxidation (M))|F}[PG]AS 8 -1 36.904 0 0 3.6235 0 0 165.09609181850084 162.05596338443596 327.1520552029368 0 0 0 0 0 0.3054621874040891 0 1.3494850021680094 0 SAA{M(Oxidation (M))|F}[PG]AS 3.6235 - 175 + NaN NaN 140856.8 NaN 5332 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7734 41.884 NaN 127670 35 0 27346 0.261 + 11491 IYQRDPLKL 9 47 573.3374592747738 1144.6603656163475 2 573.3369140625 MULTI HCD FTMS 0 0 0 7727 35162.4609375 0.3276686041322342 -4 0.0953521728515625 7 Unmodified _IYQRDPLKL_ ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant 21.590151480376914 0.17382222009858564 2 {I|L}Y 2 7 35.573 0 0 3.1078 0 0 0 865.4939058893186 865.4939058893186 13.89075625191822 0 0 0 0 0 1.6989700043360187 0 0 + {I|L}Y 3.1078 + + 18 + NaN NaN 101825.6 NaN 5333 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7735 41.887 NaN 28401 35 0 6418.4 0.261 -1 MYYNMNDID 9 17 626.7300585098775 1251.445564086555 2 626.72900390625 MULTI HCD FTMS 0 0 0 7727 15494.4453125 0.678338917213497 -5 0.11835479736328125 8 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))YYNM(Oxidation (M))NDID_ tr|U7STP9|U7STP9_FUSNUInnermembraneproteinYbhLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01143PE=3SV=1 1.844237919475145 0.33703635659052655 2 V{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.5553 0 0 987.30864150215 0 987.30864150215 0 19.463950151760656 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.5553 - 1 NaN NaN 86565.3 NaN 5334 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7736 41.891 NaN 30282 35 0 4754.5 0.261 -1 HMVSDEYEQL 10 18 633.769315386188 1265.524077839176 2 633.7688598632812 MULTI HCD FTMS 0 0 0 7727 9727.3935546875 0.3710829966489896 -4 0.0953521728515625 9 Oxidation (M) _HM(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 5.296884461304476 0.4472664531305844 2 YEQ{I|L} 4 -1 31.938 0 0 2.5237 0 0 714.25883681465 0 714.25883681465 0 31.938200260161125 0 0 0 0 0 0 0 YEQ{I|L} 2.5237 + + 8 NaN NaN 92103.4 NaN 5335 2399 7727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7738 41.896 NaN 1509100 35 0 220060 0.327 + 24663 RYLSPKYIKMF 11 97 487.9355264321726 1460.7847498967178 3 487.9352111816406 MULTI HCD FTMS 0 0 0 7737 588548.375 1 0 0 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 79.86024073602366 0.005771753837212769 2 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 111.95 0 0 7.6638 7.6638 93.697 0 0 0 15.228787452803374 5.752574989159953 5.752574989159953 15.228787452803374 0 2.6989700043360187 1.5228787452803376 2.8243923658886185 0 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]{I|L}SPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[PS]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[KP]S[Y{I|L}]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[KP]Y{[TV]|[{I|L}S]}RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}A][VG]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[K{I|L}]Y[PS]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NP]TR{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}V{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QT]T[RP][KP]V{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NP]T[VG]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}V{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.6638;6.6213;5.3802;4.9162;4.7414;4.5217;4.4377;4.0687;3.6525;3.4459 -;+;-;-;-;-;-;-;-;- + 3011 NaN NaN 318068.5 NaN 5336 2400 7737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7739 41.9 NaN 115640 35 0 10315 0.261 + -1 VSPGYETEMRF 11 50 458.5401215244804 1372.5985351736413 3 458.5397033691406 MULTI HCD FTMS 0 0 0 7737 42414.13671875 0.35808729742775175 14 -0.3450126647949219 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VSPGYETEM(Oxidation (M))RF_ REV__MXRA5|p.C2711F|1|0.25|ENSG00000101825|chrX:3310071-3310071|C/A|missense_variant 5.868138319507137 0.39318500527288264 2 [YE]{M(Oxidation (M))|F}{[SA]|[TG]}W 6 -1 29.824 0 0 2.1728 0 0 0 586.2348626485037 586.2348626485037 0.13128818850567825 0 0 0 0 0.9247425010840047 1.154901959985743 0.3252574989159953 0 [YE]{M(Oxidation (M))|F}{[SA]|[TG]}W 2.1728 - 89 NaN NaN 104272.7 NaN 5337 2400 7737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7740 41.904 NaN 293240 35 0 29711 0.261 + 32998 YATHPFKF 8 59 505.75827385858304 1009.5019947839661 2 505.75799560546875 MULTI HCD FTMS 0 0 0 7737 75324.9609375 0.799310037631824 -2 0.052661895751953125 3 Unmodified _YATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 88.90359156742426 0.022411103817228297 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}THP{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 8 0 + 73.484 0 0 7.2792 7.2792 95.667 0 0 0 25.969100130080562 67.99955520665284 25.969100130080562 61.55598570886154 0 2.298455006504028 2 1.4124379954164592 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}THP{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{[{M(Oxidation (M))|F}H]|[RQ]}{[MG]|[TS]}{M(Oxidation (M))|F} 7.2792;1.1816;0.88339 +;-;- + 121 NaN NaN 127513 NaN 5338 2400 7737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7741 41.907 NaN 44805 35 0 6127.5 0.261 -1 RGMTCASCV 9 22 492.7043106839819 NaN 0 492.6917724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _RGMTCASC(Carbamidomethyl (C))V_ ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A 1.844237919475145 0.28630992268396543 2 G 1 -1 3.4949 0 0 0.35539 0 0 508.73227751855126 414.6280916803344 923.3603691988857 0 0 0 0 0 0 0 0 0 G 0.35539 + + 1 + NaN NaN 90723.3 NaN 5339 2400 7737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7742 41.91 NaN 119700 35 0 19840 0.261 -1 TLTDCVVMR 9 40 527.2569584771666 1052.499364021133 2 527.7584838867188 MULTI HCD FTMS 0 0 0 7737 13843.640625 0.5612814422639713 3 -0.07887649536132812 5 Oxidation (M) _TLTDCVVM(Oxidation (M))R_ AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000170144|ENST00000392524|HNRNPA3;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000437410.2_1_1:54441353-54441674:-|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;nc|ENSG00000170144|P51991-2|HNRNPA3 22.736283301280096 0.1639198954644489 2 [{I|L}T]TD{[DS]|[MA]|[CV]|TT}V[R{M(Oxidation (M))|F}] 9 -1 + 51.628 0 0 4.9053 4.9053 91.384 0 0 0 42.67606240177031 3.9254497678533085 3.9254497678533085 51.62848732905715 0 0.4247425010840047 2 0.4247425010840047 0 [{I|L}T]TD{[DS]|[MA]|[CV]|TT}V[R{M(Oxidation (M))|F}] 4.9053 + + 44 + NaN NaN 96140.1 NaN 5340 2400 7737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7744 41.915 NaN 1041500 35 0 303930 0.327 + 18829 NADPQAVTM 9 80 473.71864276789495 945.4227326025899 2 473.71832275390625 MULTI HCD FTMS 0 0 0 7743 678645.5625 0.8565538941690232 2 -0.05922698974609375 1 Unmodified _NADPQAVTM_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 100.0907132914201 0.004261551473353346 2 {[QG]|[NA]}D[QP]AVTM 9 0 + 86.71 0 0 9.1715 9.1715 97.345 0 0 0 4.876954943324549 4.876954943324549 4.876954943324549 32.08674701179433 0 2.6747425010840047 1.0969100130080565 0.28872548999643577 1.024227503252014 + + {[QG]|[NA]}D[QP]AVTM;{[QG]|[NA]}D[QP]AMS{I|L};{[QG]|[NA]}D[QP]T{[VA]|[{I|L}G]}M;{[WN]|[YH]}YYTS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[QS]|[NT]}[Y{I|L}]W 9.1715;5.7776;5.5806;1.7598;0.31047 +;-;-;-;- + 352 NaN NaN 260291.4 NaN 5341 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7745 41.92 NaN 463480 35 0 65306 0.261 + 22038 QGELHSSVL 9 61 485.2537262478396 968.4928995624792 2 485.2535095214844 MULTI HCD FTMS 0 0 0 7743 212088.109375 0.8291442233151123 1 -0.029621124267578125 2 Unmodified _QGELHSSVL_ REV__ENSG00000277481|ENST00000620267|PKD1L3 34.10243960390752 0.09241788333544565 2 {[QG]|[NA]}DAA[QP]AV{I|L} 10 -1 + 47.171 0 0 4.8705 4.8705 82.636 0 0 0 15.228014480832925 29.212046717774527 15.228014480832925 1.249387366082999 0 0.4247425010840047 1.3010299956639813 0.3494850021680094 1.055462187404089 {[QG]|[NA]}DAA[QP]AV{I|L};{[QG]|[NA]}A{[DA]|[EG]}[QP]AV{I|L};{[QG]|[NA]}D[HT]{[TV]|[{I|L}S]}V{I|L};{[QG]|[NA]}[HS]E{[TV]|[{I|L}S]}V{I|L};QQ{[DA]|[EG]}[QP]AV{I|L};AAN{[DA]|[EG]}[QP]AV{I|L} 4.8705;4.7415;4.6359;4.4068;2.7191;2.1503 -;-;-;-;-;- 356 NaN NaN 172832.6 NaN 5342 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7746 41.923 NaN 180740 35 0 21154 0.261 + 34762 YQERGLEV 8 56 497.2536039738846 992.4926550145692 2 497.253173828125 MULTI HCD FTMS 0 0 0 7743 66492.9609375 0.5179033912997867 -2 0.052642822265625 3 Unmodified _YQERGLEV_ ENST00000595406.1_1_19:22321288-22321780:+|nuORF 42.09456458481378 0.20402248593209013 2 {I|L}{[C(Carbamidomethyl (C))G]|[NC]}G{I|L}{NN|[MP]|[D{I|L}]|[EV]} 7 4 22.681 0 0 2.2852 0 0 246.11656966476295 0 246.11656966476295 0 10.117800608788912 0 0 0 0 0 1.274227503252014 1 {I|L}{[C(Carbamidomethyl (C))G]|[NC]}G{I|L}{NN|[MP]|[D{I|L}]|[EV]} 2.2852 - 121 + NaN NaN 116903.7 NaN 5343 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7747 41.927 NaN 85434 35 0 9965.6 0.261 + 924 AYCVKAQTF 9 39 515.7546970600578 1029.4948411869154 2 515.75439453125 MULTI HCD FTMS 0 0 0 7743 32144.494140625 0.5735942724430257 6 -0.14130401611328125 4 Unmodified _AYCVKAQTF_ ENSG00000174564|ENST00000329582|IL20RB;ENST00000475972.1_1_3:136705553-136729062:+|nuORF;NR4A1-IL20RB|1|fusion 34.40172386719151 0.0910440009062557 2 MS{M(Oxidation (M))|F} 3 8 27.435 0 0 2.6649 0 0 646.3434315412125 0 646.3434315412125 0 5 0 0 0 0.4247425010840047 0 0 0 MS{M(Oxidation (M))|F} 2.6649 - 29 NaN NaN 94180.2 NaN 5344 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7748 41.93 NaN 70638 35 0 13284 0.261 + 16570 LVDIQLDH 8 34 476.758363631628 951.502174330056 2 476.7579040527344 MULTI HCD FTMS 0 0 0 7743 40277.19140625 1 0 0 5 Unmodified _LVDIQLDH_ ENSG00000170962|ENST00000393158|PDGFD;nc|ENSG00000170962|Q9GZP0-2|PDGFD 16.942295170755138 0.46913822049235215 2 [{I|L}V]D 3 5 41.695 0 0 4.382 0 0 0 621.2993078514635 621.2993078514635 36.2101498947667 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 + [{I|L}V]D 4.382 + + 7 + NaN NaN 111326.7 NaN 5345 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7749 41.933 NaN 117350 35 0 29557 0.261 + 9063 HPEVAPDVRL 10 39 566.8091870906162 1131.6038212480323 2 566.8087768554688 MULTI HCD FTMS 0 0 0 7743 36480.1484375 0.7172076042029856 -3 0.0723114013671875 6 Unmodified _HPEVAPDVRL_ ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 15.248480904072842 0.3684828712757339 2 HPE 3 7 28.188 0 0 2.4909 0 0 0 765.4297579400999 765.4297579400999 16.49288766643714 0 0 0 0 0.5 0 0 0 + HPE 2.4909 + + 16 + NaN NaN 116477.1 NaN 5346 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7750 41.937 NaN 122240 35 0 13869 0.261 + 21666 PYTKVEESF 9 55 550.2691534484466 1098.523753963693 2 550.7711181640625 MULTI HCD FTMS 0 0 0 7743 38270.28125 0.5665401917605841 -4 0.09864425659179688 7 Unmodified _PYTKVEESF_ ENSG00000182858|ENST00000330817|ALG12 31.26834338654808 0.10542797264966089 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}[K{I|L}]ES{M(Oxidation (M))|F} 9 3 + 48.094 0 0 4.3781 4.3781 90.578 0 0 0 5.887722355916409 7.638466054303663 5.887722355916409 48.093947540197206 0 0.8807196863200843 2 0.7614393726401688 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}[K{I|L}]ES{M(Oxidation (M))|F} 4.3781 - 70 NaN NaN 111352.4 NaN 5347 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7751 41.94 NaN 69001 35 0 4859 0.261 + 10770 ISHHTTVPLT 10 36 553.3031616210938 NaN 0 553.3031616210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ISHHTTVPLT_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7 5.731851221503515 0.33527861879838866 2 S 1 9 4.6041 0 0 0.41681 0 0 656.3934960919936 358.14414392642817 1014.5376400184218 0 0 0 0 0 0 0 0 0 + S 0.41681 + + 7 + NaN NaN 102359.1 NaN 5348 2401 7743 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7753 41.945 NaN 636310 35 0 124770 0.327 + 8902 HPDEDISL 8 39 463.2166930047771 924.4188330763542 2 463.2165222167969 MULTI HCD FTMS 0 0 0 7752 383636.28125 0.790500836711129 2 -0.04927825927734375 1 Unmodified _HPDEDISL_ ENSG00000010244|ENST00000394670|ZNF207;ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670|ZNF207 40.44857923139169 0.22516712537107883 2 {I|L}S{I|L} 3 5 39.693 0 0 4.2938 0 0 593.2075062482437 0 593.2075062482437 0 32.70303756120384 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + {I|L}S{I|L} 4.2938 + + 19 NaN NaN 187505.3 NaN 5349 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7754 41.949 NaN 450390 35 0 48966 0.261 + 13989 KYSLIKGNF 9 84 535.3053428099587 1068.5961326867173 2 535.3055419921875 MULTI HCD FTMS 0 0 0 7752 269871.0625 0.06844862153751606 12 -0.2957420349121094 2 Unmodified _KYSLIKGNF_ ENSG00000143546|ENST00000368733|S100A8 137.42381684818497 0.00015474832393368816 2 KYS{I|L}{I|L} 5 4 48.619 0 0 4.5498 0 0 0 461.21570111625147 461.21570111625147 28.44187677400525 0 0 0 0 1.2302046884880937 0 0.6139829889124311 0 + KYS{I|L}{I|L} 4.5498 + + 648 + NaN NaN 152277.5 NaN 5350 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7755 41.953 NaN 243310 35 0 51879 0.261 -1 HPFFKDMSL 9 42 569.2734474624344 1136.5323419916688 2 569.273681640625 MULTI HCD FTMS 0 0 0 7752 95665.546875 0.27258779461397137 12 -0.2957420349121094 3 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 11.494710602746466 0.2610445893512368 2 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3291489974054 752.3291489974054 24.20818753952375 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 14 + NaN NaN 128020.5 NaN 5351 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7756 41.956 NaN 97803 35 0 16774 0.261 -1 DMHTEVTTL 9 26 531.742144989856 1061.469737046512 2 531.7417602539062 MULTI HCD FTMS 0 0 0 7752 35262.1953125 0.06657987429488389 32 -0.8363037109375 4 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 20.453626601364224 0.18364154288633264 2 TT{I|L} 3 -1 44.693 0 0 4.2105 0 0 728.2795763451403 0 728.2795763451403 0 37.70303756120384 0 0 0 1 0 0.8494850021680094 0 TT{I|L} 4.2105 + + 7 NaN NaN 95216.7 NaN 5352 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7757 41.96 NaN 95278 35 0 21788 0.261 + 3777 EPDDRIVL 8 30 478.75597276160033 955.4973925900007 2 478.7556457519531 MULTI HCD FTMS 0 0 0 7752 38419.33984375 0.06240168358111744 21 -0.54974365234375 5 Unmodified _EPDDRIVL_ REV__ENSG00000167693|ENST00000336868|NXN;REV__ENST00000575171.1_1_17:729096-882585:-|nuORF;REV__ENST00000575455.5_1_17:722628-800182:-|nuORF;REV__nc|ENSG00000167693|Q6DKJ4-2|NXN;REV__nc|ENSG00000167693|Q6DKJ4-3|NXN 7.289230182591677 0.5311777711368266 2 V{I|L} 2 -1 25.969 0 0 2.7179 0 0 725.3343584976651 0 725.3343584976651 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.7179 + + 3 NaN NaN 92528.3 NaN 5353 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7758 41.963 NaN 52549 35 0 6290.5 0.261 + -1 CPCLPCPPLL 10 28 613.7899465647131 NaN 0 613.7899780273438 PEAK HCD FTMS 0 0 0 7752 11240.5908203125 0.4868737335762521 1 -0.029605865478515625 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))PC(Carbamidomethyl (C))LPC(Carbamidomethyl (C))PPLL_ REV__ENST00000530174.1_1_11:65392695-65393791:+|nuORF 7.910154910731844 0.33341429274560913 2 {I|L}P 2 -1 14.776 0 0 1.2057 0 0 131.09339042389985 881.3065356505674 1012.3999260744672 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L}P 1.2057 + + 3 + NaN NaN 95444.4 NaN 5354 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7759 41.966 NaN 53001 35 0 5710.2 0.261 + 21330 PSSAPSLPHSL 11 40 546.7887914749292 NaN 0 546.7892456054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PSSAPSLPHSL_ REV__ENST00000465752.1_1_22:24237017-24237290:+|nuORF 2.735195868890462 0.3343611804837492 2 {I|L} 1 -1 6.9897 0 0 0.64034 0 0 657.3313538465396 318.1240633600219 975.4554172065616 0 0 0 0 0 0 0 0 0 {I|L} 0.64034 + + 4 + NaN NaN 87362.6 NaN 5355 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7760 41.97 NaN 53342 35 0 5489.1 0.261 + 14191 LAMEIFRVQ 9 35 553.8047485351562 NaN 0 553.8047485351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LAMEIFRVQ_ nc|ENSG00000039600|O94993-2|SOX30 3.2813086475875832 0.27934607848455584 2 AV 2 7 10.969 0 0 0.99214 0 0 113.0900167880297 819.3604220025999 932.4504387906296 0 0 0 0 0 0 0 0 0 AV 0.99214 - 3 + NaN NaN 91594 NaN 5356 2402 7752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7762 41.975 NaN 250980 35 0 26550 0.327 + 12992 KYIQEAEML 9 65 570.7843694694259 1139.5541860056517 2 570.7836303710938 MULTI HCD FTMS 0 0 0 7761 105294.7109375 1 0 0 1 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 76.82478488871298 0.006879825292024087 2 [YK]{I|L}QEAE{M(Oxidation (M))|F}{I|L} 9 0 + 86.799 0 0 7.617 7.617 91.403 0 0 0 4.762036441594191 80.10341502655906 4.762036441594191 9.208187539523749 0 2.774227503252014 0 0 0.6203715150305281 + + [YK]{I|L}QEAE{M(Oxidation (M))|F}{I|L};[YK]{I|L}[AG]EAE{M(Oxidation (M))|F}{I|L};[YQ][K{I|L}]EAE{M(Oxidation (M))|F}{I|L};[HV][KG][HC]AE{M(Oxidation (M))|F}{I|L} 7.617;6.8089;4.4298;1.9137 +;-;-;- + 378 NaN NaN 127155.1 NaN 5357 2403 7761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7763 41.979 NaN 60796 35 0 12302 0.261 -1 0 30 582.3055966320974 1162.5966403309947 2 582.30517578125 MULTI HCD FTMS 0 0 0 7761 22906.595703125 0.0672071084151657 9 -0.2168426513671875 2 NaN NaN 2 E 1 -1 6.9897 0 0 0.60121 0 0 623.3192488288447 407.2157381647094 1030.5349869935542 0 0 0 0 0 0 0 0 0 E 0.60121 - 1 + NaN NaN 105708.9 NaN 5358 2403 7761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7764 41.983 NaN 53430 35 0 6053 0.261 + 4726 EYRKNEQF 8 39 557.2711392844205 NaN 0 557.2820434570312 PEAK HCD FTMS 0 0 0 7761 7266.1552734375 0.5195185782763799 1 -0.019672393798828125 3 Unmodified _EYRKNEQF_ REV__ENSG00000110723|ENST00000265843|EXPH5;REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5 5.230669730166228 0.38822285293237185 2 K 1 -1 6.9897 0 0 0.62827 0 0 264.08906778491445 717.3187349908811 981.4078027757955 0 0 0 0 0 0 0 0 0 K 0.62827 + + 13 + NaN NaN 95571.2 NaN 5359 2403 7761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7765 41.986 NaN 52618 35 0 12115 0.261 + 35416 YYEEQHPEL 9 21 604.2670384843465 1206.5195240354929 2 604.26611328125 MULTI HCD FTMS 0 0 0 7761 22196.48046875 0.010362521904219242 46 -1.1886444091796875 4 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 34.40172386719151 0.0910440009062557 2 YYE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H 6 3 46.444 0 0 3.8494 0 0 0 354.1676119440063 354.1676119440063 39.45432175029467 0 0 0 0 1.1549471895720984 2 0.8494850021680094 0 + YYE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H 3.8494 + + 9 + NaN NaN 88433.6 NaN 5360 2403 7761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7766 41.989 NaN 13392 35 0 4026.8 0.261 + -1 SLVEFCFRR 9 13 607.3134765625 NaN 0 607.3134765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _SLVEFC(Carbamidomethyl (C))FRR_ REV__ENSG00000131584|ENST00000354700|ACAP3;REV__ENST00000467278.5_1_1:1228946-1234134:-|nuORF;REV__nc|ENSG00000131584|Q96P50-1|ACAP3;REV__nc|ENSG00000131584|Q96P50-4|ACAP3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92250.4 NaN 5361 2403 7761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7768 41.994 NaN 822000 35 0 63901 0.327 + 916 AYATHPFKF 9 71 541.2769093281277 1080.5392657230552 2 541.2767333984375 MULTI HCD FTMS 0 0 0 7767 455156.5625 0.6893580232983447 3 -0.062404632568359375 1 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 134.295615338601 0.00034446139420701925 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 91.428 0 0 8.4614 8.4614 90.89 0 0 0 15.1023796111607 15.1023796111607 15.1023796111607 6.7609125905568135 0 2.7302046884880937 2 1.586696871556164 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ATHP{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT{M(Oxidation (M))|F}S{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT{M(Oxidation (M))|F}KYA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT{M(Oxidation (M))|F}K{M(Oxidation (M))|F}S{M(Oxidation (M))|F};AYA{[{M(Oxidation (M))|F}H]|[RQ]}[TP]K{M(Oxidation (M))|F};AY{M(Oxidation (M))|F}[HA][TP]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT{M(Oxidation (M))|F}KY{M(Oxidation (M))|F}A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AT{M(Oxidation (M))|F}K{M(Oxidation (M))|F}YA;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[YG][YV]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ][YV]K{M(Oxidation (M))|F} 8.4614;7.8357;7.5489;7.5489;7.0637;6.4865;6.3619;6.3619;6.1744;5.3908 +;-;-;-;-;-;-;-;-;- + 1000 NaN NaN 210987 NaN 5362 2404 7767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7769 41.999 NaN 244970 35 0 35232 0.261 + 34419 YPESESIMM 9 38 559.723010978105 1117.4314690230099 2 559.7225341796875 MULTI HCD FTMS 0 0 0 7767 133438.125 0.9285719489296519 -5 0.13154220581054688 2 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 71.13359017698441 0.008721403657255008 2 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 76.191 0 0 6.8184 0 0 389.1591053693375 0 389.1591053693375 0 68.2319095436452 0 0 0 2.4247425010840047 0 1.2302046884880937 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.8184 + + 157 NaN NaN 120731.2 NaN 5363 2404 7767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7770 42.002 NaN 117340 35 0 13189 0.261 + 14445 LERYVASLMP 10 38 589.8153497983772 1177.6161466635542 2 589.8155517578125 MULTI HCD FTMS 0 0 0 7767 73229.671875 0.1366676690189285 10 -0.24646377563476562 3 Unmodified _LERYVASLMP_ ENSG00000174839|ENST00000311128|DENND6A 11.494710602746466 0.4035943721457025 2 {I|L}{M(Oxidation (M))|F}VEKE 6 8 53.008 0 0 4.5013 0 0 0 429.2248934381469 429.2248934381469 43.0866814795592 0 0 0 0 0.5 0 0.9247425010840047 0 {I|L}{M(Oxidation (M))|F}VEKE 4.5013 - 40 + NaN NaN 98594.1 NaN 5364 2404 7767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7771 42.006 NaN 67018 35 0 6459.9 0.262 + 33049 YDDDIDDE 8 30 500.17420449851664 998.3338560638333 2 500.1741638183594 MULTI HCD FTMS 0 0 0 7767 28621.052734375 0.2863240503559028 4 -0.09503936767578125 4 Unmodified _YDDDIDDE_ ENSG00000107341|ENST00000263228|UBE2R2 0.7936320650641473 0.540814922690045 2 S 1 8 0.088644 0 0 0.0088792 0 0 456.10352266715205 452.16791711978755 908.2714397869396 0 0 0 0 0 0 0 0 0 S 0.0088792 - 3 + NaN NaN 112137.8 NaN 5365 2404 7767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7772 42.009 NaN 49965 35 0 4911.8 0.262 + 22462 QQSRGRQRAE 10 34 405.88003754813104 NaN 0 405.8677062988281 PEAK HCD FTMS 0 0 0 7767 4909.92236328125 1 0 0 5 Unmodified _QQSRGRQRAE_ ENST00000424460.1_1_7:8380649-8382766:+|nuORF;ENST00000435967.1_1_7:8380649-8380892:+|nuORF 1.4551175022131473 0.3389389101219087 2 K 1 10 0.088644 0 0 0.010947 0 0 320.9840303191152 357.64069544010005 678.6247257592153 0 0 0 0 0 0 0 0 0 K 0.010947 - 1 + NaN NaN 108411.2 NaN 5366 2404 7767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7773 42.012 NaN 64282 35 0 5943.6 0.261 + -1 YMYGAPFS 8 45 476.19819813291537 NaN 0 476.1981506347656 PEAK HCD FTMS 0 0 0 7767 17957.728515625 0.721017519010276 12 -0.3026008605957031 6 Oxidation (M) _YM(Oxidation (M))YGAPFS_ REV__ENSG00000104419|ENST00000323851|NDRG1;REV__ENST00000518010.5_1_8:134269105-134296554:-|nuORF;REV__nc|ENSG00000104419|Q92597-2|NDRG1;REV__nc|ENSG00000104419|Q92597-3|NDRG1 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F}M 2 -1 6.1979 0 0 0.65215 0 0 493.21739738712137 176.0354403131469 669.2528377002683 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}M 0.65215 - 7 + NaN NaN 86461.3 NaN 5367 2404 7767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7775 42.017 NaN 476990 35 0 55248 0.327 + 18987 NASEDRLEL 9 69 523.7591134274433 1045.5036739216864 2 523.7589721679688 MULTI HCD FTMS 0 0 0 7774 274870.5 0.6137093013228038 4 -0.08843612670898438 1 Unmodified _NASEDRLEL_ ENSG00000175073|ENST00000310421|VCPIP1 100.7086487251713 0.004245359191255521 2 {[QG]|[NA]}SEDR{I|L}E{I|L} 9 0 + 82.528 0 0 7.8936 7.8936 97.116 0 0 0 9.401056208558032 9.401056208558032 9.401056208558032 82.5275156501371 0 2.3737125054200234 1.6989700043360187 0.9247425010840047 1.066901560044258 + + {[QG]|[NA]}SEDR{I|L}E{I|L} 7.8936 + + 264 NaN NaN 154533 NaN 5368 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7776 42.022 NaN 332350 35 0 45863 0.261 + 25594 SFVSAGFASF 10 46 510.2433429509052 NaN 0 510.2340393066406 PEAK HCD FTMS 0 0 0 7774 17701.8125 0.44527190719420956 5 -0.12147140502929688 2 Unmodified _SFVSAGFASF_ ENSG00000182580|ENST00000330394|EPHB3 25.399314129420986 0.2368981700431367 2 SAA{[ET]|[MV]}AAS 8 6 37.713 0 0 3.7029 0 0 165.09693983625283 162.05600916080314 327.152948997056 0 0 0 0 0 0 0 1.610924374808178 0 SAA{[ET]|[MV]}AAS 3.7029 - 154 + NaN NaN 131821.5 NaN 5369 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7777 42.025 NaN 426530 35 0 40900 0.261 -1 RYQQWMERF 9 77 453.88003143201183 1358.6182648962356 3 453.8799133300781 MULTI HCD FTMS 0 0 0 7774 119864.8125 0.20477962963556165 19 -0.5071144104003906 3 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 30.7034409873982 0.10802119112323902 2 {M(Oxidation (M))|F}[PS]HQ{M(Oxidation (M))|F} 6 -1 25.028 0 0 1.8421 0 0 597.2596731466349 0 597.2596731466349 0 6.3257688890023935 0 0 0 0.8807196863200843 0 0 1.1861818737241734 {M(Oxidation (M))|F}[PS]HQ{M(Oxidation (M))|F} 1.8421 - 159 + NaN NaN 164543.6 NaN 5370 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7778 42.029 NaN 350140 35 0 34321 0.261 -1 KMPKFKMPSF 10 75 419.5558466311776 1255.6457104937328 3 419.5557861328125 MULTI HCD FTMS 0 0 0 7774 131972.671875 0.47563804333527354 -13 0.32556915283203125 4 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 30.354368406336206 0.22911046082012473 2 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 -1 + 68.778 0 0 5.4775 5.4775 92.289 0 0 0 46.78818004405214 14.432342842105896 14.432342842105896 51.648648723716235 0 1.6382104921644451 0 0 0 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F};[WR]H[YE]KP[Q{I|L}] 5.4775;1.3642 +;- + 81 + NaN NaN 159167.7 NaN 5371 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7779 42.032 NaN 125340 35 0 33497 0.261 + 11492 IYQRDPLKL 9 29 573.3374592747738 1144.6603656163475 2 573.337158203125 MULTI HCD FTMS 0 0 0 7774 68512.5 0.6384477832911832 2 -0.039386749267578125 5 Unmodified _IYQRDPLKL_ ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant 12.240655878213236 0.2545997876781172 2 K{I|L} 2 7 25.969 0 0 2.2687 0 0 885.4701113043769 0 885.4701113043769 0 21.53212513775344 0 0 0 0.5 0 0 0 + K{I|L} 2.2687 + + 14 NaN NaN 113359.9 NaN 5372 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7780 42.035 NaN 67157 35 0 8106.3 0.261 + 15700 LPEQHDCTF 9 39 545.2369786732576 1088.459404413315 2 545.2366333007812 MULTI HCD FTMS 0 0 0 7774 45008.01953125 0.9810403458436546 1 -0.026340484619140625 6 Unmodified _LPEQHDCTF_ ENSG00000156639|ENST00000287218|ZFAND3;ENST00000463847.1_1_6:38110907-38120162:+|nuORF 11.494710602746466 0.2610445893512368 2 CT{M(Oxidation (M))|F} 3 6 28.188 0 0 2.5897 0 0 719.3194447248062 0 719.3194447248062 0 12.703037561203843 0 0 0 0.3494850021680094 0 0 0 + CT{M(Oxidation (M))|F} 2.5897 + + 13 NaN NaN 99784.1 NaN 5373 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7781 42.039 NaN 8503.4 35 0 3200.8 0.261 -1 YYFMSSCNY 9 7 617.7308349609375 NaN 0 617.7308349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YYFMSSC(Carbamidomethyl (C))NY_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108578.8 NaN 5374 2405 7774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7783 42.044 NaN 564240 35 0 91676 0.327 + 24664 RYLSPKYIKMF 11 69 487.9355264321726 1460.7847498967178 3 487.9353332519531 MULTI HCD FTMS 0 0 0 7782 184056.1875 0.3127290726102166 6 -0.1478118896484375 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 52.19289622718417 0.07241336989735415 2 [Y{I|L}]RS[KP]Y{I|L}KET 11 4 71.168 0 0 4.8719 0 0 0 78.98811097520198 78.98811097520198 51.704194988599966 0 0 0 0 1.8494850021680094 1.5228787452803376 1.7302046884880937 0 [Y{I|L}]RS[KP]Y{I|L}KET 4.8719 - 195 NaN NaN 172895.3 NaN 5375 2406 7782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7784 42.048 NaN 180800 35 0 22468 0.261 + 32999 YATHPFKF 8 54 505.75827385858304 1009.5019947839661 2 505.7583312988281 MULTI HCD FTMS 0 0 0 7782 32379.708984375 0.3435969442889336 4 -0.09513092041015625 2 Unmodified _YATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 30.636539890814138 0.35121444018244025 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{M(Oxidation (M))|F} 8 0 + 43.548 0 0 4.3138 4.3138 90.24 0 0 0 19.326440444176214 17.940724540922766 17.940724540922766 40.6947654920421 0 1.6435078169319297 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[HT]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 4.3138;0.28265 +;- + 46 NaN NaN 121484.1 NaN 5376 2406 7782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7785 42.052 NaN 144050 35 0 15209 0.261 + 17711 MAVIDGNVM 9 63 491.2223410298686 980.4301291265372 2 491.22259521484375 MULTI HCD FTMS 0 0 0 7782 40198.87109375 0.5851575003329246 -4 0.09863662719726562 3 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 71.13359017698441 0.008721403657255008 2 MSV{I|L}D[NG]V{M(Oxidation (M))|F} 9 1 + 56.334 0 0 5.7459 5.7459 92.908 0 0 0 54.34456017411421 10.330145895351848 10.330145895351848 56.334260217474394 0 2.0924778212679485 0 0.3494850021680094 0.3252574989159953 MSV{I|L}D[NG]V{M(Oxidation (M))|F} 5.7459 - 59 + NaN NaN 111003.4 NaN 5377 2406 7782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7787 42.057 NaN 216330 35 0 50746 0.327 + 18830 NADPQAVTM 9 58 473.71864276789495 945.4227326025899 2 473.7183532714844 MULTI HCD FTMS 0 0 0 7786 111330.03125 0.14051542819179128 8 -0.21043777465820312 1 Unmodified _NADPQAVTM_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 43.981846655682396 0.04706587046877104 2 {[QG]|[NA]}D[QP]AVTM 9 0 + 52.898 0 0 5.5951 5.5951 91.896 0 0 0 4.607952948012652 37.44009708316895 4.607952948012652 35.428870427483545 0 2.305462187404089 0 0 0 + + {[QG]|[NA]}D[QP]AVTM;{[TV]|[{I|L}S]}[HD][SG]VTM;{[TV]|[{I|L}S]}[HD]{[QD]|[EN]|[WG]|[KD]|[RS]}TM 5.5951;1.8477;1.0317 +;-;- + 110 NaN NaN 133147.6 NaN 5378 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7788 42.064 NaN 130770 35 0 16577 0.272 + 30858 VQPHDLGEV 9 37 497.2536039738846 992.4926550145692 2 497.2532958984375 MULTI HCD FTMS 0 0 0 7786 65179.47265625 0.50767283417463 4 -0.1150665283203125 2 Unmodified _VQPHDLGEV_ ENST00000447985.1_1_21:30260216-30260456:-|nuORF 20.453626601364224 0.18364154288633264 2 N{I|L} 2 8 10.969 0 0 1.1052 0 0 149.1069583563429 613.2384737604124 762.3454321167553 0 0 0 0 0 0 0 0 0 N{I|L} 1.1052 - 43 + NaN NaN 95497.5 NaN 5379 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7789 42.068 NaN 375820 35 0 53026 0.261 + 1928 DADLREQAL 9 68 515.7618714507729 1029.5091899683457 2 515.7623291015625 MULTI HCD FTMS 0 0 0 7786 120499.0078125 0.07099990060668589 -5 0.11168289184570312 3 Unmodified _DADLREQAL_ ENSG00000196878|ENST00000356082|LAMB3 93.93812099017352 0.0044227730261779084 2 {[DA]|[EG]}D{I|L}REQA{I|L} 9 0 + 92.761 0 0 9.0103 9.0103 93.39 0 0 0 13.223214115951407 13.223214115951407 13.223214115951407 9.208187539523749 0 2.5669015600442577 1.5228787452803376 0.5994850021680094 0.3807196863200844 + + {[DA]|[EG]}D{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}RE[AG]A{I|L};{[DA]|[EG]}[RV]EEQA{I|L};{[DA]|[EG]}[RV]EE[AG]A{I|L};[R{I|L}]DGEEQA{I|L};{[DA]|[EG]}D{I|L}[VG][VG]{[RE]|[WV]};[R{I|L}]DGEE[AG]A{I|L};{[DA]|[EG]}NV[KA][DN]A{I|L};{[DA]|[EG]}D{I|L}[VG][KQ]{[QG]|[NA]};[R{I|L}]D[DV][DN]A{I|L} 9.0103;8.1158;6.1526;5.2581;5.1108;4.2824;4.2163;3.6326;3.1508;2.5809 +;-;-;-;-;-;-;-;-;- + 324 NaN NaN 138175 NaN 5380 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7790 42.071 NaN 62355 35 0 5279.3 0.261 + 11924 KFIDTTSKF 9 40 543.7950986694144 1085.5756444056287 2 543.7948608398438 MULTI HCD FTMS 0 0 0 7786 43883.71875 0.005259768190687596 106 -2.8785247802734375 4 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 12.174745833636585 0.2551692358394414 2 K{M(Oxidation (M))|F}{I|L}D 4 5 38.175 0 0 3.5166 0 0 0 579.2788108697354 579.2788108697354 11.977437731477423 0 0 0 0 0.4247425010840047 0 0.5 0 + K{M(Oxidation (M))|F}{I|L}D 3.5166 + + 9 + NaN NaN 96889.3 NaN 5381 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7791 42.074 NaN 86926 35 0 13268 0.261 + 34976 YSRTGSSVL 9 37 485.2537262478396 968.4928995624792 2 485.253662109375 MULTI HCD FTMS 0 0 0 7786 33716.92578125 0.13181405747758138 7 -0.18405914306640625 5 Unmodified _YSRTGSSVL_ REV__chr6:7310029-7329849|305|10.78|0.03|8.29|-|1|SSR1,CAGE1|3;REV__ENST00000489567.5_1_6:7310225-7313369:-|nuORF 6.2057823575117 0.30397260197431997 2 V{I|L} 2 -1 25.969 0 0 2.6814 0 0 738.3292168059498 0 738.3292168059498 0 20.026975159433533 0 0 0 0.5 0 0 0 V{I|L} 2.6814 + + 28 NaN NaN 117823.3 NaN 5382 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7792 42.078 NaN 155460 35 0 19963 0.261 + 17712 MAVIDGNVM 9 56 491.2223410298686 980.4301291265372 2 491.2225646972656 MULTI HCD FTMS 0 0 0 7786 51806.71875 0.7541278951217651 -3 0.062404632568359375 6 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 85.27202061508552 0.004649858145912257 2 MSV{I|L}D[NG]V{M(Oxidation (M))|F} 9 1 + 66.035 0 0 6.7353 6.7353 87.748 0 0 0 64.04492794033978 9.889917747712644 9.889917747712644 6.390756251918219 0 2.579689690656103 0 0.3807196863200844 0.6307196863200843 MSV{I|L}D[NG]V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F} 6.7353;6.0834 -;+ + 71 + NaN NaN 118705.2 NaN 5383 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7793 42.081 NaN 77277 35 0 20718 0.261 -1 0 29 482.72210693464956 963.4296609360991 2 482.7220764160156 MULTI HCD FTMS 0 0 0 7786 23887.8515625 0.03644276072638068 16 -0.4380607604980469 7 NaN NaN 2 K 1 -1 1.1092 0 0 0.11513 0 0 628.9593067874648 203.35767542056877 832.3169822080336 0 0 0 0 0 0 0 0 0 K 0.11513 - 9 + NaN NaN 96791.1 NaN 5384 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7794 42.084 NaN 65346 35 0 13795 0.261 + 3990 ERGDQYFVL 9 34 563.7815022958464 NaN 0 563.7811889648438 PEAK HCD FTMS 0 0 0 7786 23239.875 0.9765296068100595 2 -0.04904937744140625 8 Unmodified _ERGDQYFVL_ tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1 6.723162845929126 0.26266733336404485 2 V{M(Oxidation (M))|F} 2 8 10.969 0 0 0.97456 0 0 131.09565170855836 745.3269747369749 876.4226264455333 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.97456 - 4 + NaN NaN 91839.8 NaN 5385 2407 7786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7796 42.089 NaN 87727 35 0 14433 0.327 + 21667 PYTKVEESF 9 37 550.2691534484466 1098.523753963693 2 550.2685546875 MULTI HCD FTMS 0 0 0 7795 47666.671875 0.4174278384018062 4 -0.10213088989257812 1 Unmodified _PYTKVEESF_ ENSG00000182858|ENST00000330817|ALG12 47.594388314883695 0.03493607795751234 2 PYT 3 6 50.177 0 0 4.5677 0 0 0 734.3413790338499 734.3413790338499 11.517412290202671 0 0 0 0 0.8494850021680094 2 0 0 + PYT 4.5677 + + 40 + NaN NaN 105910.5 NaN 5386 2408 7795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7797 42.094 NaN 271410 35 0 30603 0.262 + 2060 DEIERKFDKW 10 64 455.8980428232211 1364.6722990698634 3 455.8977966308594 MULTI HCD FTMS 0 0 0 7795 87828.859375 0.6384548318280191 -1 0.032634735107421875 2 Unmodified _DEIERKFDKW_ ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-3|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31 38.16057220495361 0.1613691154968232 2 DE{I|L}E 4 6 63.972 0 0 4.6877 0 0 0 875.45290733271 875.45290733271 35.86844218003742 0 0 0 0 0.8807196863200843 1.6989700043360187 0.9247425010840047 0 + DE{I|L}E 4.6877 + + 63 + NaN NaN 138422.9 NaN 5387 2408 7795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7798 42.097 NaN 479690 35 0 166710 0.261 + 22985 RADESTYVL 9 55 527.2643812301899 1052.5142095271797 2 527.2645874023438 MULTI HCD FTMS 0 0 0 7795 179333.859375 0.20898025557520808 -4 0.09503936767578125 3 Unmodified _RADESTYVL_ ENSG00000115267|ENST00000649979|IFIH1 27.628801355627647 0.12213550946336599 2 YV{I|L} 3 6 34.253 0 0 3.2544 0 0 659.2912786666982 0 659.2912786666982 0 25.300084529637985 0 0 0 0.805462187404089 0 0 0 + YV{I|L} 3.2544 + + 66 NaN NaN 173418.8 NaN 5388 2408 7795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7799 42.101 NaN 18900 35 0 3078.8 0.261 + -1 VFRYCMCCD 9 18 627.2320556640625 NaN 0 627.2320556640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _VFRYC(Carbamidomethyl (C))MC(Carbamidomethyl (C))CD_ REV__nc|ENSG00000177119|Q4KMQ2-4|ANO6 0.6014990680409731 0.29233206172879045 2 Q 1 -1 5.4846 0 0 0.43826 0 0 118.06333993965002 1002.2850435846311 1120.3483835242812 0 0 0 0 0 0 0 0 0 Q 0.43826 - 2 + NaN NaN 88808.7 NaN 5389 2408 7795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7801 42.106 NaN 855320 35 0 95923 0.327 -1 0 96 560.826996754403 1119.639440575606 2 560.8087768554688 MULTI HCD FTMS 0 0 0 7800 18838.845703125 0.01620614002427414 30 -0.7972755432128906 1 NaN NaN 2 QQ{I|L}QTM[Q{I|L}] 8 -1 44.474 0 0 3.9722 0 0 131.13134117901694 0 131.13134117901694 0 25.58159703347442 0 0 0 0 0 0.7302046884880937 0.3807196863200844 QQ{I|L}QTM[Q{I|L}] 3.9722 - 1297 + NaN NaN 226952.1 NaN 5390 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7802 42.11 NaN 531150 35 0 104990 0.262 + 24027 RWLPQKNAAQF 11 72 453.58237688733544 1357.7253012622064 3 453.5820007324219 MULTI HCD FTMS 0 0 0 7800 162144.328125 1 0 0 2 Unmodified _RWLPQKNAAQF_ ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF;nc|ENSG00000221914|P63151-2|PPP2R2A 19.986897341741983 0.28293591992651296 2 [WR]{I|L}[PG]AG[KQ]AQ{M(Oxidation (M))|F} 12 5 + 42.106 0 0 3.1012 3.1012 80.449 0 0 0 0.33523034143662755 35.11615948493926 0.33523034143662755 0.5912145211865649 0 0.8807196863200843 0 0 0.4247425010840047 [WR]{I|L}[PG]AG[KQ]AQ{M(Oxidation (M))|F};[WR]{I|L}[QP]G[KQ]AQ{M(Oxidation (M))|F};[WR]{I|L}[PG]Q[KQ]AQ{M(Oxidation (M))|F} 3.1012;3.0577;2.6142 -;-;- 192 NaN NaN 182241.3 NaN 5391 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7803 42.114 NaN 196700 35 0 31130 0.261 + 3046 EAFPHDSQL 9 52 522.2432950106739 1042.4720370881478 2 522.2430419921875 MULTI HCD FTMS 0 0 0 7800 105062.1796875 0.34794572713168376 7 -0.1911468505859375 3 Unmodified _EAFPHDSQL_ ENSG00000071894|ENST00000616140|CPSF1 24.020572477871973 0.15282392193088168 2 E{I|L} 2 7 18.812 0 0 1.8046 0 0 782.3340931623062 0 782.3340931623062 0 5.1021314145189205 0 0 0 0 0 0.5 0 E{I|L} 1.8046 - 14 NaN NaN 125119.4 NaN 5392 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7804 42.117 NaN 190100 35 0 66849 0.261 + 16465 LSSSSERALGK 11 35 567.8085021088215 1133.6024512844429 2 567.8079223632812 MULTI HCD FTMS 0 0 0 7800 63632.4140625 0.8777491934248037 2 -0.06601715087890625 4 Unmodified _LSSSSERALGK_ ENST00000418368.1_2_6:58275323-58287466:-|nuORF;ENST00000422882.1_2_6:58276104-58276374:-|nuORF 4.897010918128616 0.3974440401582579 2 {I|L} 1 10 6.9897 0 0 0.61659 0 0 64.00004399434631 953.4953628382751 1017.4954068326215 0 0 0 0 0 0 0 0 0 + {I|L} 0.61659 + + 3 + NaN NaN 115906.2 NaN 5393 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7805 42.12 NaN 74948 35 0 12745 0.261 + 13352 KYMETIEKL 9 32 577.8097840876327 1153.6050152420653 2 577.8098754882812 MULTI HCD FTMS 0 0 0 7800 41346.34375 0.8709463401854068 -1 0.016414642333984375 5 Unmodified _KYMETIEKL_ ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion;PPP1R21-GTF2A1L|3|fusion 18.721224879955976 0.19860910938195908 2 KYME 4 5 28.404 0 0 2.4622 0 0 0 599.3402193658811 599.3402193658811 2.3292702409562516 0 0 0 0 0.4247425010840047 0 0 0 + KYME 2.4622 + + 13 + NaN NaN 103268.9 NaN 5394 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7806 42.124 NaN 66299 35 0 14159 0.263 + -1 CHLAELTI 8 31 478.7469719899244 955.4793910466489 2 478.7557067871094 MULTI HCD FTMS 0 0 0 7800 23363.65234375 1 0 0 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))HLAELTI_ REV__ENSG00000008226|ENST00000308059|DLEC1;REV__nc|ENSG00000008226|Q9Y238-3|DLEC1 4.75600775471527 0.5349361699807423 2 T{I|L} 2 -1 23.711 0 0 2.4816 0 0 723.3397694318375 0 723.3397694318375 0 14.75895023531386 0 0 0 0.4247425010840047 0 0 0 T{I|L} 2.4816 + + 12 NaN NaN 97143.8 NaN 5395 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7807 42.127 NaN 110470 35 0 15596 0.261 + -1 TVQACGSTPM 10 39 505.7176962088947 1009.4208394845895 2 506.21917724609375 MULTI HCD FTMS 0 0 0 7800 9143.302734375 0.3801255329841371 6 -0.16138839721679688 7 Oxidation (M) _TVQACGSTPM(Oxidation (M))_ REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1 6.2057823575117 0.44245551207394906 2 MDPR 4 -1 10.522 0 0 1.0423 0 0 129.01441966212695 378.17841516666255 507.1928348287895 0 0 0 0 0 0 0 0 0 MDPR 1.0423 - 21 + NaN NaN 98796.6 NaN 5396 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7808 42.13 NaN 31644 35 0 5364.2 0.261 + 22231 QNEVWLLMSGP 11 26 637.3166440879158 NaN 0 637.3167114257812 PEAK HCD FTMS 0 0 0 7800 19458.333984375 0.9878754880295791 2 -0.06601715087890625 8 Unmodified _QNEVWLLMSGP_ REV__ENST00000475358.1_1_10:95097388-95099921:-|nuORF 2.9952420565917617 0.33362350433860827 2 VEE 3 -1 23.94 0 0 1.8812 0 0 371.13840184595034 541.3092135065061 912.4476153524565 0 0 0 0 0 0.5 0 0.4247425010840047 0 VEE 1.8812 - 6 + NaN NaN 105474 NaN 5397 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7809 42.134 NaN 64569 35 0 11204 0.261 -1 LDLLCSMCD 9 39 563.7310790729774 1125.4476052127548 2 563.7301635742188 MULTI HCD FTMS 0 0 0 7800 11587.2392578125 0.5587029396037648 -3 0.06209564208984375 9 2 Carbamidomethyl (C) _LDLLC(Carbamidomethyl (C))SMC(Carbamidomethyl (C))D_ ENSG00000131018|ENST00000367255|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1 1.844237919475145 0.33703635659052655 2 V 1 -1 6.9897 0 0 0.62106 0 0 130.99409078378227 892.364439761955 1023.3585305457373 0 0 0 0 0 0 0 0 0 V 0.62106 - 3 + NaN NaN 94193.5 NaN 5398 2409 7800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7811 42.139 NaN 153350 35 0 14659 0.327 + 917 AYATHPFKF 9 47 541.2769093281277 1080.5392657230552 2 541.2766723632812 MULTI HCD FTMS 0 0 0 7810 78302.6171875 0.11859334095278916 9 -0.2504730224609375 1 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 53.832793166522166 0.026208976789938845 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[YG][YV]K{M(Oxidation (M))|F} 9 4 + 51.646 0 0 4.7796 4.7796 84.396 0 0 0 10.926186855262259 28.51219677964764 10.926186855262259 5.954387282529794 0 1.4247425010840047 2 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[YG][YV]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ][YV]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]H[YV]K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT][HV]SE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[HT]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]H[YV]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[HT]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH] 4.7796;4.2286;4.108;3.7333;3.1561;2.8094;1.8623;1.3946 -;-;-;-;-;-;-;- 149 NaN NaN 116904.9 NaN 5399 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7812 42.143 NaN 244660 35 0 87917 0.261 + 26171 SPNSDDTVL 9 41 474.21958531335514 946.4246176935103 2 474.21929931640625 MULTI HCD FTMS 0 0 0 7810 151148.90625 0.5440878223134541 -4 0.09513092041015625 2 Unmodified _SPNSDDTVL_ ENSG00000102401|ENST00000471229|ARMCX3 19.361941925380144 0.1930734562688509 2 C(Carbamidomethyl (C))TV{I|L} 4 6 38.488 0 0 4.0666 0 0 455.199510642775 0 455.199510642775 0 28.03009725027536 0 0 0 0.9247425010840047 0 0.3807196863200844 0 C(Carbamidomethyl (C))TV{I|L} 4.0666 - 52 NaN NaN 121130.8 NaN 5400 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7813 42.147 NaN 211250 35 0 34262 0.261 + 2073 DEPGRWYYRR 10 48 466.56127340527553 1396.6619908160267 3 466.895263671875 MULTI HCD FTMS 0 0 0 7810 50803.12890625 0.9350443458709041 1 -0.03298187255859375 3 Unmodified _DEPGRWYYRR_ REV__ENSG00000166106|ENST00000299164|ADAMTS15 5.40270961882225 0.4467063037482923 2 DE 2 -1 39.68 0 0 2.8411 0 0 0 1149.5674847576229 1149.5674847576229 27.284700126913393 0 0 0 0 0.4247425010840047 1.3979400086720375 0.5 0 DE 2.8411 + + 21 + NaN NaN 112355.4 NaN 5401 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7814 42.15 NaN 71056 35 0 13030 0.261 -1 DMHTEVTTL 9 29 531.742144989856 1061.469737046512 2 531.7421264648438 MULTI HCD FTMS 0 0 0 7810 41737.19140625 0.07880555741419093 40 -1.0574493408203125 4 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 20.453626601364224 0.18364154288633264 2 TT{I|L} 3 -1 44.693 0 0 4.2105 0 0 728.2807612862593 0 728.2807612862593 0 37.70303756120384 0 0 0 1 0 0.8494850021680094 0 TT{I|L} 4.2105 + + 13 NaN NaN 110028.3 NaN 5402 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7815 42.153 NaN 52300 35 0 10773 0.261 + 35417 YYEEQHPEL 9 24 604.2670384843465 1206.5195240354929 2 604.7687377929688 MULTI HCD FTMS 0 0 0 7810 21488.298828125 0.016149773256312082 53 -1.4193763732910156 5 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 13.042465956692817 0.2476723265019929 2 YYE 3 6 34.705 0 0 2.8765 0 0 0 748.3288767620613 748.3288767620613 34.704999916446795 0 0 0 0 0.4247425010840047 2 0 0 + YYE 2.8765 + + 2 + NaN NaN 94067.7 NaN 5403 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7816 42.157 NaN 58264 35 0 13896 0.263 + -1 DCCDMLDL 8 21 500.67520820242413 999.3358634716483 2 500.675048828125 MULTI HCD FTMS 0 0 0 7810 17548.380859375 0.26118007099627927 -4 0.09513092041015625 6 Carbamidomethyl (C),Oxidation (M) _DC(Carbamidomethyl (C))CDM(Oxidation (M))LDL_ REV__ENSG00000089820|ENST00000350060|ARHGAP4;REV__ENST00000404127.6_1_X:153173185-153186849:-|nuORF;REV__nc|ENSG00000089820|P98171-2|ARHGAP4 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96203.5 NaN 5404 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7817 42.16 NaN 57251 35 0 6189.9 0.261 + 7962 GEDWNNWW 8 26 553.7199322236442 1105.4253115140882 2 553.7200317382812 MULTI HCD FTMS 0 0 0 7810 11739.63671875 0.3133228466571739 -4 0.09513092041015625 7 Unmodified _GEDWNNWW_ ENST00000460874.6_1_9:21802906-21815460:+|nuORF 0.6903765706972694 0.5409681170271811 2 T 1 8 6.9897 0 0 0.63231 0 0 131.92943843741733 869.4331148736936 1001.362553311111 0 0 0 0 0 0 0 0 0 T 0.63231 - 7 + NaN NaN 92416.4 NaN 5405 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7818 42.163 NaN 48536 35 0 10589 0.261 + -1 QLRSHQCKG 9 21 557.282165629314 1112.549778325428 2 557.2828369140625 MULTI HCD FTMS 0 0 0 7810 3443.668212890625 0.028228834931553697 23 -0.6228675842285156 8 Carbamidomethyl (C) _QLRSHQC(Carbamidomethyl (C))KG_ REV__ENST00000494982.1_1_1:112251877-112255115:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 86212.8 NaN 5406 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7819 42.167 NaN 23473 35 0 4990.2 0.261 -1 0 19 580.9644165039062 NaN 0 580.9644165039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85174.3 NaN 5407 2410 7810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7821 42.172 NaN 430920 35 0 43721 0.327 -1 KMPKFKMPSF 10 67 419.5558466311776 1255.6457104937328 3 419.5556640625 MULTI HCD FTMS 0 0 0 7820 207120.375 0.7464752247584826 -7 0.17747116088867188 1 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 35.995811192298525 0.18015466441198996 2 KMPK{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PS]{M(Oxidation (M))|F} 10 -1 + 66.903 0 0 5.3281 5.3281 92.424 0 0 0 41.22847372392647 15.501896823007826 15.501896823007826 66.90257377045383 0 1.7689301784845295 0 0.3807196863200844 0 KMPK{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PS]{M(Oxidation (M))|F} 5.3281 + + 118 + NaN NaN 146252.5 NaN 5408 2411 7820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7822 42.176 NaN 73891 35 0 9828.9 0.261 + 24932 RYSSMAASF 9 31 510.23415655534797 1018.453760177496 2 510.2341003417969 MULTI HCD FTMS 0 0 0 7820 40202.2421875 0.18097047035841873 7 -0.18454360961914062 2 Unmodified _RYSSMAASF_ ENSG00000162366|ENST00000294338|PDZK1IP1 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}AAS{M(Oxidation (M))|F} 5 4 45.573 0 0 4.4747 0 0 477.1888600080094 0 477.1888600080094 0 45.57319389984244 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}AAS{M(Oxidation (M))|F} 4.4747 + + 50 NaN NaN 97838.8 NaN 5409 2411 7820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7823 42.18 NaN 51391 35 0 6033.9 0.261 + 24513 RYLEKPMEI 9 29 589.8153497983772 1177.6161466635542 2 589.8153076171875 MULTI HCD FTMS 0 0 0 7820 34478.09375 0.0643460578803609 17 -0.45487213134765625 3 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 13.614867670302875 0.2427269026982664 2 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}KE 6 6 42.664 0 0 3.6229 0 0 0 429.22455774478755 429.22455774478755 42.663800089887545 0 0 0 0 1 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}KE 3.6229 - 12 + NaN NaN 104346.2 NaN 5410 2411 7820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7824 42.183 NaN 62052 35 0 11173 0.262 + 28046 TGFWFSVI 8 31 478.7469719899244 955.4793910466489 2 478.7468566894531 MULTI HCD FTMS 0 0 0 7820 11332.40625 0.4850442937288239 2 -0.042720794677734375 4 Unmodified _TGFWFSVI_ REV__ENSG00000136986|ENST00000259512|DERL1;REV__ENST00000524119.1_1_8:124031433-124042893:-|nuORF;REV__nc|ENSG00000136986|Q9BUN8-2|DERL1 5.230669730166228 0.5342319408533849 2 T{I|L} 2 -1 23.711 0 0 2.4816 0 0 723.3395252912125 0 723.3395252912125 0 23.711375162600703 0 0 0 0.4247425010840047 0 0 0 T{I|L} 2.4816 - 10 NaN NaN 105774 NaN 5411 2411 7820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7825 42.186 NaN 46826 35 0 6807.4 0.261 -1 KYVGAVQML 9 30 512.7784337450715 1023.5423145569431 2 512.7783813476562 MULTI HCD FTMS 0 0 0 7820 19765.232421875 0.7560891602230329 -2 0.06601715087890625 5 Oxidation (M) _KYVGAVQM(Oxidation (M))L_ ENSG00000048471|ENST00000566228|SNX29;nc|ENSG00000048471|Q8TEQ0-2|SNX29 25.399314129420986 0.14091189997036632 2 QVQPY 5 -1 37.391 0 0 3.6531 0 0 390.2258473126969 0 390.2258473126969 0 21.90614065464281 0 0 0 1.6677353201839438 0 0 0 QVQPY 3.6531 - 45 NaN NaN 91957.4 NaN 5412 2411 7820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7827 42.192 NaN 278380 35 0 25651 0.326 -1 RYLSPKYIKMF 11 67 487.9355264321726 1460.7847498967178 3 487.9354553222656 MULTI HCD FTMS 0 0 0 7826 56113.6328125 0.09534243096414972 12 -0.3329620361328125 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 20.410884301107757 0.2792417076485638 2 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 18.557 0 0 1.2703 0 0 744.4250386549108 0 744.4250386549108 0 0.5977185236079663 0 0 0 1.3494850021680094 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.2703 + + 93 + NaN NaN 127591.8 NaN 5413 2412 7826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7828 42.196 NaN 113950 35 0 8462 0.261 + 18440 MPVHAAVQM 9 60 492.24398398622475 982.4734150392495 2 492.243896484375 MULTI HCD FTMS 0 0 0 7826 19724.115234375 0.34389279919678467 1 -0.023021697998046875 2 Unmodified _MPVHAAVQM_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 44.40701690623563 0.04511410083598184 2 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Y{I|L}]AVQM 8 4 + 45.935 0 0 4.6754 4.6754 87.162 0 0 0 0.45757490560674796 41.33085333508717 0.45757490560674796 9.262137858390808 0 1.2302046884880937 0 0 0.4247425010840047 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Y{I|L}]AVQM;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Y{I|L}]AV[AG]M 4.6754;3.7327 -;- 108 NaN NaN 101838.1 NaN 5414 2412 7826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7829 42.199 NaN 158510 35 0 12394 0.261 -1 PMGFLAHSH 9 63 506.7387942939323 1011.4630356546646 2 507.749755859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _PM(Oxidation (M))GFLAHSH_ ENST00000286827.7_1_21:32649196-32711610:-|nuORF 12.531546534597751 0.2520865569484384 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[HT][PA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 9 -1 + 20.606 0 0 2.0373 2.0373 81.406 0 0 0 1.8656779154925118 2.6474096786392245 1.8656779154925118 3.8008871492820617 0 0.3807196863200844 1.154901959985743 1.086696871556164 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[HT][PA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]WVAPQ;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VS[YR]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[MS]|[{M(Oxidation (M))|F}A]}{[CT]|[{M(Oxidation (M))|F}G]}{NN|[MP]|[D{I|L}]|[EV]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][HT]V[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]QQV[EP] 2.0373;1.6615;1.1483;0.94073;0.81274;0.78879 -;-;-;-;-;- 139 + NaN NaN 114793 NaN 5415 2412 7826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7830 42.203 NaN 254670 35 0 36578 0.261 + -1 YCDYFPVI 8 41 538.7410255798126 1075.467498226425 2 538.7406005859375 MULTI HCD FTMS 0 0 0 7826 43727.42578125 0.39097385144181074 -5 0.134765625 4 Carbamidomethyl (C) _YC(Carbamidomethyl (C))DYFPVI_ REV__ENSG00000137944|ENST00000260508|KYAT3;REV__nc|ENSG00000137944|Q6YP21-3|KYAT3 8.593279151180031 0.5292430274356741 2 PV{I|L} 3 -1 31.198 0 0 2.9009 0 0 748.2516427908323 0 748.2516427908323 0 30.713337517843655 0 0 0 0.5 0 0 0 PV{I|L} 2.9009 + + 9 NaN NaN 123211.8 NaN 5416 2412 7826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7831 42.206 NaN 130290 35 0 13140 0.261 + 14203 LAQYRALHQQF 11 54 458.91332687344953 1373.7181512205486 3 458.9136657714844 MULTI HCD FTMS 0 0 0 7826 24380.61328125 0.7650500431620549 1 -0.023021697998046875 5 Unmodified _LAQYRALHQQF_ REV__ENSG00000175073|ENST00000310421|VCPIP1 5.047519993296601 0.3967839584832933 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.0631 0 0 1208.6724339127345 0 1208.6724339127345 0 4.030899869919438 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0631 + + 29 + NaN NaN 103234.2 NaN 5417 2412 7826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7832 42.209 NaN 32052 35 0 4746.4 0.261 + 5554 FLIKLKTFR 9 32 583.3769006631052 1164.7392483930103 2 583.3775024414062 MULTI HCD FTMS 0 0 0 7826 4029.125732421875 0.29721287699589877 4 -0.10543060302734375 6 Unmodified _FLIKLKTFR_ tr|U7SSC2|U7SSC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01681PE=4SV=1 0.5247636613948944 0.34703895399870666 2 N 1 9 5.4846 0 0 0.47088 0 0 183.16901021117275 864.5205782525999 1047.6895884637727 0 0 0 0 0 0 0 0 0 N 0.47088 - 1 + NaN NaN 106599.5 NaN 5418 2412 7826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7834 42.214 NaN 2472300 35 0 348780 0.327 + 1929 DADLREQAL 9 104 515.7618714507729 1029.5091899683457 2 515.7617797851562 MULTI HCD FTMS 0 0 0 7833 1678724.625 0.9891308126491636 1 -0.026271820068359375 1 Unmodified _DADLREQAL_ ENSG00000196878|ENST00000356082|LAMB3 203.63889746883072 1.2993995354712843E-17 2 DAD{I|L}REQA{I|L} 9 0 + 109.77 0 0 10.662 10.662 91.978 0 0 0 5.105742396127923 5.998461003289094 5.105742396127923 5.105742396127923 0 3.079689690656103 1.5228787452803376 1.450679860468595 1.416386562212267 + + DAD{I|L}REQA{I|L};EGD{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}RAADA{I|L};DAD{I|L}RE[AG]A{I|L};{[DA]|[EG]}D{I|L}RE[AG]A{I|L};EGD{I|L}RE[AG]A{I|L};DADR{I|L}EQA{I|L};{[DA]|[EG]}{I|L}DREQA{I|L};{[DA]|[EG]}{I|L}DRAADA{I|L} 10.662;10.166;10.08;9.9761;9.4711;9.1851;8.9751;8.7294;8.4503;8.3469 +;-;+;-;-;-;-;-;-;- + 7486 + NaN NaN 457250.7 NaN 5419 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7835 42.219 NaN 60901 35 0 8106.7 0.261 -1 MPSSREDFL 9 34 549.2504159559672 1096.4862789787344 2 549.2501220703125 MULTI HCD FTMS 0 0 0 7833 33577.39453125 0.8138351385604348 -4 0.10873794555664062 2 Oxidation (M) _M(Oxidation (M))PSSREDFL_ ENSG00000171940|ENST00000371471|ZNF217 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}{I|L} 2 -1 17.474 0 0 1.5937 0 0 818.3219471662125 0 818.3219471662125 0 0.026975159433529683 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.5937 + + 4 NaN NaN 95691.3 NaN 5420 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7836 42.222 NaN 83070 35 0 7587.7 0.261 + 11925 KFIDTTSKF 9 44 543.7950986694144 1085.5756444056287 2 543.7950439453125 MULTI HCD FTMS 0 0 0 7833 31138.5859375 0.003732175587718499 112 -3.0305023193359375 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 14.957161354070239 0.23112978309247678 2 K{M(Oxidation (M))|F}{I|L}DG 5 5 35.094 0 0 3.2327 0 0 0 522.2509249322874 522.2509249322874 14.291746928241125 0 0 0 0 0.3807196863200844 0 0.5 0 K{M(Oxidation (M))|F}{I|L}DG 3.2327 - 16 + NaN NaN 96493.1 NaN 5421 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7837 42.226 NaN 110050 35 0 8375.2 0.261 -1 MAVIDGNVM 9 43 491.2223410298686 980.4301291265372 2 491.22216796875 MULTI HCD FTMS 0 0 0 7833 33176.53125 0.48293635039381766 3 -0.08240890502929688 4 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 32.30548876998284 0.10066689432505688 2 V{I|L}[{M(Oxidation (M))|F}T]H{M(Oxidation (M))|F} 6 -1 27.853 0 0 2.8409 0 0 218.07151992011876 0 218.07151992011876 0 9.269856214892371 0 0 0 1.3494850021680094 0 0 0 V{I|L}[{M(Oxidation (M))|F}T]H{M(Oxidation (M))|F} 2.8409 - 100 NaN NaN 106902.4 NaN 5422 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7838 42.229 NaN 48165 35 0 3778.5 0.261 + 3357 EEPSIQHCF 9 36 545.2366487642809 1088.4587445953616 2 545.236572265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EEPSIQHCF_ REV__DEPDC1B|p.R433H|1|0.19|ENSG00000035499|chr5:60599205-60599205|C/T|missense_variant 4.3292370932331545 0.3181982124262546 2 {I|L} 1 -1 3.9794 0 0 0.3656 0 0 51.99637579159873 920.3493136041624 972.3456893957612 0 0 0 0 0 0 0 0 0 {I|L} 0.3656 + + 2 + NaN NaN 99903.6 NaN 5423 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7839 42.232 NaN 30221 35 0 6022.9 0.261 -1 FLCRMQLCL 9 22 600.2896072469276 1198.5646615606552 2 600.2894897460938 MULTI HCD FTMS 0 0 0 7833 12315.951171875 0.5351392673752503 -1 0.023021697998046875 6 Carbamidomethyl (C),Oxidation (M) _FLC(Carbamidomethyl (C))RM(Oxidation (M))QLCL_ ENSG00000183317|ENST00000373048|EPHA10;nc|ENSG00000183317|Q5JZY3-2|EPHA10;nc|ENSG00000183317|Q5JZY3-3|EPHA10 3.944395688203298 0.32111559684428237 2 YE{I|L} 3 -1 26.198 0 0 2.1858 0 0 775.371385642775 0 775.371385642775 0 20.713337517843655 0 0 0 0 0 0 0 YE{I|L} 2.1858 - 5 NaN NaN 82748.8 NaN 5424 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7840 42.236 NaN 11442 35 0 3960.8 0.261 + 23604 RPGWAWELRC 10 10 637.3166440879158 NaN 0 636.9857788085938 PEAK HCD FTMS 0 0 0 7833 4940.0693359375 0.25080119449373134 6 -0.17477035522460938 7 Unmodified _RPGWAWELRC_ REV__ENST00000523590.5_3_1:242011560-242012219:+|nuORF 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92413.1 NaN 5425 2413 7833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7842 42.241 NaN 1395300 35 0 488120 0.327 + 22986 RADESTYVL 9 58 527.2643812301899 1052.5142095271797 2 527.2640991210938 MULTI HCD FTMS 0 0 0 7841 801191.5625 0.9336397380811139 2 -0.0561370849609375 1 Unmodified _RADESTYVL_ ENSG00000115267|ENST00000649979|IFIH1 34.93206674587334 0.08860942999206235 2 ESTYV{I|L} 6 3 64.954 0 0 6.1713 0 0 342.1642323224625 0 342.1642323224625 0 53.94061491126763 0 0 0 1.3807196863200843 0 0.8494850021680094 0 + ESTYV{I|L} 6.1713 + + 85 NaN NaN 293282 NaN 5426 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7843 42.245 NaN 1067100 35 0 127260 0.261 + 24123 RYATQLQQI 9 102 560.8090693993734 1119.6035858655466 2 560.8090209960938 MULTI HCD FTMS 0 0 0 7841 532356.125 0.7531729130742384 3 -0.08916473388671875 2 Unmodified _RYATQLQQI_ CON__A2A4G1;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15 93.93812099017352 0.0044227730261779084 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}QQ{I|L} 9 2 + 83.321 0 0 7.442 7.442 87.321 0 0 0 1.9282236348257413 16.478174818886373 1.9282236348257413 1.9282236348257413 0 1.9802046884880937 1.154901959985743 0.4247425010840047 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}QQ{I|L};[YR]ATQ{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}Q[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}[AG]Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RT[AG]{I|L}QQ{I|L};[YR]AT[AG]{I|L}QQ{I|L};[YR]ATQ{I|L}[AG]Q{I|L};[YR]ATQ{I|L}Q[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RSAA{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RT[AG]{I|L}Q[AG]{I|L} 7.442;7.2698;6.6195;6.6195;6.6195;6.4473;6.4473;6.4473;5.8847;5.801 -;+;-;-;-;-;-;-;-;- + 1375 NaN NaN 245886.7 NaN 5427 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7844 42.249 NaN 528270 35 0 109870 0.263 -1 0 50 421.3828715315008 2522.253570389405 6 421.8963623046875 MULTI HCD FTMS 0 0 0 7841 5466.7783203125 0.6359705866581598 -2 0.04929351806640625 3 NaN NaN 2 KG{M(Oxidation (M))|F} 3 -1 23.812 0 0 0.94409 0 0 2172.065442803271 0 2172.065442803271 0 16.822581265925436 0 0 0 0 0 0 0 KG{M(Oxidation (M))|F} 0.94409 - 20 + NaN NaN 155736.3 NaN 5428 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7845 42.252 NaN 120320 35 0 15218 0.261 -1 SFLECDDTP 9 45 542.2174933761381 1082.4204338190762 2 542.2174682617188 MULTI HCD FTMS 0 0 0 7841 34557.13671875 0.5109985715465709 1 -0.026378631591796875 4 Carbamidomethyl (C) _SFLEC(Carbamidomethyl (C))DDTP_ ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF;ENST00000566642.1_1_15:41146593-41146767:+|nuORF;nc|ENSG00000166145|O43278|SPINT1 4.3292370932331545 0.3181982124262546 2 A 1 -1 6.9897 0 0 0.64575 0 0 234.98092818762706 773.3782442682249 1008.3591724558519 0 0 0 0 0 0 0 0 0 A 0.64575 - 3 + NaN NaN 115009 NaN 5429 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7846 42.255 NaN 313040 35 0 74710 0.261 + 22989 RADQFEYVM 9 45 587.7635195260096 1173.5124861188192 2 587.7637939453125 MULTI HCD FTMS 0 0 0 7841 115825.6953125 0.22567151851836068 -4 0.1019744873046875 5 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 40.23920728925047 0.06424668180817725 2 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 3 69.641 0 0 5.9344 0 0 342.1640797345719 0 342.1640797345719 0 66.14638779968487 0 0 0 2.4247425010840047 0 0.4247425010840047 0 + Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5.9344 + + 54 NaN NaN 127786.3 NaN 5430 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7847 42.259 NaN 75310 35 0 5224.3 0.261 + 18988 NASEDRLEL 9 47 523.7591134274433 1045.5036739216864 2 523.759033203125 MULTI HCD FTMS 0 0 0 7841 22588.107421875 0.0504329552428629 13 -0.3628578186035156 6 Unmodified _NASEDRLEL_ ENSG00000175073|ENST00000310421|VCPIP1 4.897010918128616 0.31389406404703984 2 E{I|L} 2 7 18.583 0 0 1.7775 0 0 785.3643665998062 0 785.3643665998062 0 8.1259189508755 0 0 0 0 0 0 0 + E{I|L} 1.7775 + + 8 NaN NaN 89526.8 NaN 5431 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7848 42.262 NaN 47552 35 0 6872.3 0.261 + 17671 MAEERVVM 8 27 482.73279110796665 963.4510292827333 2 482.7223815917969 MULTI HCD FTMS 0 0 0 7841 8776.8056640625 1 0 0 7 Unmodified _MAEERVVM_ ENSG00000149418|ENST00000278742|ST14 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 89104.4 NaN 5432 2414 7841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7850 42.267 NaN 312550 35 0 51847 0.327 -1 RYQQWMERF 9 63 453.88003143201183 1358.6182648962356 3 453.8802490234375 MULTI HCD FTMS 0 0 0 7849 62174.71875 0.10622062983096237 29 -0.77105712890625 1 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 21.590151480376914 0.17382222009858564 2 R{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.5434 0 0 1037.4383465386168 0 1037.4383465386168 0 4.515449934959719 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.5434 + + 62 + NaN NaN 134393.3 NaN 5433 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7851 42.272 NaN 126880 35 0 41143 0.261 + -1 IMTATAVLMAP 11 34 567.7978784354445 NaN 0 567.80810546875 PEAK HCD FTMS 0 0 0 7849 5702.4716796875 0.9234299516717223 1 -0.029758453369140625 2 Oxidation (M) _IM(Oxidation (M))TATAVLMAP_ REV__nc|ENSG00000197847|A6NK97|SLC22A20P 5.731851221503515 0.3258605322397891 2 QQ 2 -1 8.5835 0 0 0.7572 0 0 131.0806889309742 743.3449190729124 874.4256080038865 0 0 0 0 0 0 0 0 0 QQ 0.7572 - 7 + NaN NaN 110668.1 NaN 5434 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7852 42.275 NaN 95914 35 0 12157 0.261 -1 YYRGNYMTF 9 30 615.766027956572 1229.5175029799439 2 615.7655639648438 MULTI HCD FTMS 0 0 0 7849 41632.015625 1 0 0 3 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ ENSG00000204574|ENST00000326195|ABCF1;nc|ENSG00000204574|Q8NE71-2|ABCF1 10.073929032068715 0.27331982688540024 2 Y{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 4 -1 21.198 0 0 1.7241 0 0 653.2915516584 0 653.2915516584 0 17.703037561203843 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 1.7241 + + 20 NaN NaN 99393.3 NaN 5435 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7853 42.278 NaN 219680 35 0 26767 0.264 + 3488 EGVKMNFIDR 10 59 403.54111840565645 NaN 0 403.5278015136719 PEAK HCD FTMS 0 0 0 7849 3686.080810546875 0.22724251174608587 4 -0.12211990356445312 4 Unmodified _EGVKMNFIDR_ ENSG00000123552|ENST00000500704|USP45 3.5964929083625545 0.337106189561315 2 P 1 10 5.4846 0 0 0.68125 0 0 588.9416137870958 116.05038629703358 704.9920000841294 0 0 0 0 0 0 0 0 0 P 0.68125 - 4 + NaN NaN 115123.6 NaN 5436 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7854 42.282 NaN 116690 35 0 14811 0.261 + 17061 LYKPDSNEF 9 39 556.7666980427891 1111.5188431523782 2 556.7677001953125 MULTI HCD FTMS 0 0 0 7849 48987.14453125 0.25540074836742166 -4 0.09537124633789062 5 Unmodified _LYKPDSNEF_ ENSG00000181433|ENST00000370709|SAGE1 34.40172386719151 0.0910440009062557 2 [Y{I|L}]K 3 6 43.2 0 0 3.8866 0 0 0 704.2529320718862 704.2529320718862 14.259687322722812 0 0 0 0 0.8494850021680094 2 0 0.4247425010840047 + [Y{I|L}]K 3.8866 + + 14 + NaN NaN 95213.4 NaN 5437 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7855 42.285 NaN 82255 35 0 16000 0.261 + 34051 YNDHVVQF 8 39 511.24035225837264 NaN 0 511.2410888671875 PEAK HCD FTMS 0 0 0 7849 24814.955078125 1 0 0 6 Unmodified _YNDHVVQF_ REV__ENSG00000113263|ENST00000422843|ITK;REV__ENST00000519402.5_1_5:156607865-156667213:+|nuORF;REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF 11.640296217721598 0.38822285293237185 2 SA 2 -1 4.068 0 0 0.39865 0 0 166.0873196517078 693.2840670221311 859.371386673839 0 0 0 0 0 0 0 0 0 SA 0.39865 - 3 + NaN NaN 120917.6 NaN 5438 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7856 42.288 NaN 115690 35 0 34378 0.261 -1 RYKLYQEMF 9 29 647.3185878444 1292.6226227555999 2 647.3179931640625 MULTI HCD FTMS 0 0 0 7849 47841.4765625 0.3466378437150565 -3 0.07567214965820312 7 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 23.789781309258295 0.1548179064208189 2 {I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 46.688 0 0 3.6118 0 0 447.260057517775 0 447.260057517775 0 41.202972028968716 0 0 0 0.7302046884880937 0 0 0 {I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6118 + + 37 NaN NaN 100676.8 NaN 5439 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7857 42.292 NaN 57007 35 0 10124 0.264 + 21124 PPELCWVL 8 29 478.7467651456097 NaN 0 478.7567138671875 PEAK HCD FTMS 0 0 0 7849 3523.131103515625 1 0 0 8 Unmodified _PPELCWVL_ GRIN3A|p.R353C|1|0.81|ENSG00000198785|chr9:101686843-101686843|G/A|missense_variant 8.593279151180031 0.38822285293237185 2 V 1 7 6.9897 0 0 0.73154 0 0 131.07673169095193 722.3106173150999 853.3873490060519 0 0 0 0 0 0 0 0 0 + V 0.73154 + + 4 + NaN NaN 94944.6 NaN 5440 2415 7849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7859 42.297 NaN 270640 35 0 112580 0.327 -1 CMLHESVI 8 45 474.21958531335514 946.4246176935103 2 474.2192687988281 MULTI HCD FTMS 0 0 0 7858 194525.328125 0.7002290971876706 2 -0.059413909912109375 1 Oxidation (M) _CM(Oxidation (M))LHESVI_ ENST00000309964.8_1_4:56300945-56301062:-|nuORF 19.438996006549623 0.45076845602799126 2 DTV{I|L} 4 -1 39.412 0 0 4.1644 0 0 500.18541152168126 0 500.18541152168126 0 35.43305028184122 0 0 0 0.7742275032520141 0 0.4247425010840047 0 DTV{I|L} 4.1644 - 15 NaN NaN 120804.1 NaN 5441 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7860 42.301 NaN 66255 35 0 8791.8 0.261 + -1 CCATPPDSGM 10 38 499.1748818294003 996.3352107256006 2 499.1745300292969 MULTI HCD FTMS 0 0 0 7858 43779.35546875 0.6923273125183853 1 -0.03302764892578125 2 Oxidation (M) _CCATPPDSGM(Oxidation (M))_ REV__ENSG00000275302|ENST00000615863|CCL4;REV__ENSG00000276070|ENST00000617405|CCL4L2;REV__nc|ENSG00000276070|Q8NHW4-10|CCL4L1;REV__nc|ENSG00000276070|Q8NHW4-2|CCL4L1;REV__nc|ENSG00000276070|Q8NHW4-3|CCL4L1;REV__nc|ENSG00000276070|Q8NHW4-5|CCL4L1;REV__nc|ENSG00000276070|Q8NHW4-6|CCL4L1;REV__nc|ENSG00000276070|Q8NHW4|CCL4L1 3.5964929083625545 0.45626689593999237 2 {M(Oxidation (M))|F} 1 -1 19.732 0 0 1.9805 0 0 831.2894018650522 0 831.2894018650522 0 5.127881306118454 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.9805 + + 5 + NaN NaN 86128.4 NaN 5442 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7861 42.305 NaN 101300 35 0 18048 0.261 -1 VPNPDPVTM 9 28 493.2365446394793 984.4585363457586 2 493.2364807128906 MULTI HCD FTMS 0 0 0 7858 53042.72265625 1 0 0 3 Oxidation (M) _VPNPDPVTM(Oxidation (M))_ ENSG00000161800|ENST00000312377|RACGAP1 17.11289562659939 0.2125047172822487 2 T{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.1458 0 0 718.365074286968 0 718.365074286968 0 30.969100130080562 0 0 0 1 0 0 0 T{M(Oxidation (M))|F} 3.1458 + + 24 + NaN NaN 107111.9 NaN 5443 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7862 42.308 NaN 90015 35 0 13627 0.261 + 15 AAGTVVWAAF 10 35 496.7617700920602 NaN 0 496.76153564453125 PEAK HCD FTMS 0 0 0 7858 35388.6875 0.7768532394152667 -1 0.029758453369140625 4 Unmodified _AAGTVVWAAF_ REV__ENST00000300141.10_1_15:65804856-65810023:-|nuORF;REV__ENST00000321147.10_1_15:65808125-65809990:-|nuORF;REV__ENST00000560665.1_1_15:65804856-65809996:-|nuORF 25.399314129420986 0.2368981700431367 2 AAA 3 -1 29.693 0 0 2.9947 0 0 613.310331100333 162.05599390201408 775.366325002347 0 0 0 0 0 1.5 0 0 0 AAA 2.9947 - 29 + NaN NaN 114436 NaN 5444 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7863 42.312 NaN 65489 35 0 21099 0.261 + 29822 VEQIWRDIED 10 27 434.8821235406956 NaN 0 434.8821105957031 PEAK HCD FTMS 0 0 0 7858 50107.0625 0.6484195636017841 -77 1.9346275329589844 5 Unmodified _VEQIWRDIED_ ENSG00000170703|ENST00000393382|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-2|TTLL6;nc|ENSG00000170703|Q8N841-3|TTLL6 0.15932191953741626 0.34004793154798674 2 {M(Oxidation (M))|F} 1 10 0.088644 0 0 0.010215 0 0 462.03278848588496 255.61786829166255 717.6506567775475 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.010215 - 1 + NaN NaN 99885.4 NaN 5445 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7864 42.315 NaN 57208 35 0 9599.7 0.261 -1 DMHTEVTTL 9 22 531.742144989856 1061.469737046512 2 531.741455078125 MULTI HCD FTMS 0 0 0 7858 26770.05078125 0.050545537510861216 46 -1.2349929809570312 6 Oxidation (M) _DM(Oxidation (M))HTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 10.073929032068715 0.27331982688540024 2 TT{I|L} 3 -1 36.198 0 0 3.4102 0 0 728.2816307883407 0 728.2816307883407 0 36.197887582883936 0 0 0 1 0 0 0 TT{I|L} 3.4102 + + 6 NaN NaN 105084.3 NaN 5446 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7865 42.318 NaN 60766 35 0 7392.4 0.261 + 24514 RYLEKPMEI 9 29 589.8153497983772 1177.6161466635542 2 589.8156127929688 MULTI HCD FTMS 0 0 0 7858 19973.3125 0.037275956481426294 22 -0.5831146240234375 7 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 5.296884461304476 0.3108627248283497 2 K 1 8 9.732 0 0 0.82641 0 0 488.22971755853786 558.2683199518186 1046.4980375103564 0 0 0 0 0 0.4247425010840047 0 0 0 + K 0.82641 + + 16 + NaN NaN 92814.5 NaN 5447 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7866 42.321 NaN 187420 35 0 27864 0.264 -1 0 60 403.91940162554533 2014.5606257947268 5 403.91888427734375 MULTI HCD FTMS 0 0 0 7858 11659.7744140625 0.591217264109461 1 -0.03302764892578125 8 NaN NaN 2 P 1 -1 6.9897 0 0 0.34696 0 0 1670.486420327733 244.00373254947502 1914.490152877208 0 0 0 0 0 0 0 0 0 P 0.34696 - 16 + NaN NaN 112432.9 NaN 5448 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7867 42.325 NaN 56320 35 0 8822.5 0.261 + 35418 YYEEQHPEL 9 29 604.2670384843465 1206.5195240354929 2 604.267578125 MULTI HCD FTMS 0 0 0 7858 16354.6455078125 0.007635236250587069 59 -1.577667236328125 9 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 6.723162845929126 0.3000504726104499 2 YYE 3 6 33.2 0 0 2.7517 0 0 0 748.3261202447874 748.3261202447874 26.2101498947667 0 0 0 0 0.4247425010840047 2 0 0 + YYE 2.7517 + + 4 + NaN NaN 96367 NaN 5449 2416 7858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7869 42.33 NaN 1079000 35 0 249940 0.327 -1 RYKLYQEMF 9 71 431.8812613461347 1292.6219546386042 3 431.8811950683594 MULTI HCD FTMS 0 0 0 7868 380985.1875 0.8605202764444168 -2 0.06278610229492188 1 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 13.614867670302875 0.2427269026982664 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 29.222 0 0 2.2607 0 0 980.5081650581011 0 980.5081650581011 0 23.737125054200234 0 0 0 0.8252574989159953 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2607 + + 13 NaN NaN 246471.8 NaN 5450 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7870 42.334 NaN 513430 35 0 44381 0.261 + 12327 KMPKFKMPSF 10 86 419.5558466311776 1255.6457104937328 3 419.5558166503906 MULTI HCD FTMS 0 0 0 7868 238505.6875 0.8595899205123538 -1 0.03302764892578125 2 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 53.7980654928069 0.0639768079611429 2 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 0 + 77.369 0 0 6.1617 6.1617 92.663 0 0 0 51.69457492926435 22.62665603828446 22.62665603828446 32.91257655320562 0 1.7638793319624577 0 0.7614393726401688 0 + + KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PKY[PS]MK{M(Oxidation (M))|F};[KP]MKY[PS]MK{M(Oxidation (M))|F};[KP]E[RH][WE]K{M(Oxidation (M))|F} 6.1617;3.5405;3.1605;0.36221 +;-;-;- + 280 + NaN NaN 166950 NaN 5451 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7871 42.338 NaN 300990 35 0 109720 0.261 + 30610 VPCKVEPGL 9 45 471.2599702188261 940.5053875044522 2 471.2594299316406 MULTI HCD FTMS 0 0 0 7868 110893.125 0.14381228804021806 -5 0.138458251953125 3 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 29.84058131909904 0.11198220037953927 2 VPC 3 6 46.682 0 0 4.9635 0 0 0 638.3499239557249 638.3499239557249 18.662216995756626 0 0 0 0 0.5 1.6989700043360187 0 0 + VPC 4.9635 + + 44 + NaN NaN 149673.6 NaN 5452 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7872 42.341 NaN 49472 35 0 8430.2 0.261 + 8695 HGDCYYVL 8 20 485.21093760471734 968.4073222762347 2 485.21002197265625 MULTI HCD FTMS 0 0 0 7868 17430.03125 0.42535573508734303 3 -0.08899688720703125 4 Unmodified _HGDCYYVL_ ENSG00000198788|ENST00000675028|MUC2;nc|ENSG00000198788|Q02817|MUC2 5.230669730166228 0.5342319408533849 2 V{I|L} 2 6 25.969 0 0 2.6816 0 0 738.2446766584 0 738.2446766584 0 20.48455006504028 0 0 0 0.5 0 0 0 + V{I|L} 2.6816 + + 3 NaN NaN 101927.8 NaN 5453 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7873 42.345 NaN 194010 35 0 41318 0.261 + 31953 VYPEKLATKF 10 39 598.3399703750314 1194.6653878168627 2 598.841064453125 MULTI HCD FTMS 0 0 0 7868 42808.8671875 0.9859239318528406 -1 0.03302764892578125 5 Unmodified _VYPEKLATKF_ ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS 10.799506525563784 0.4100970765206026 2 VY 2 8 45.217 0 0 3.7849 0 0 0 929.5094624022918 929.5094624022918 43.62273132779855 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.7849 + + 6 + NaN NaN 124792.8 NaN 5454 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7874 42.348 NaN 93787 35 0 25191 0.264 -1 0 40 416.22812887769317 415.2208524110932 1 416.22784423828125 MULTI HCD FTMS 0 0 0 7868 26668.953125 0.5845615851471526 98 -2.6613693237304688 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 114597.8 NaN 5455 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7875 42.351 NaN 49225 35 0 6111.8 0.261 + 7963 GEDWNNWW 8 30 553.7199322236442 1105.4253115140882 2 553.7197265625 MULTI HCD FTMS 0 0 0 7868 9128.3017578125 0.24362810880982969 3 -0.08899688720703125 7 Unmodified _GEDWNNWW_ ENST00000460874.6_1_9:21802906-21815460:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92956.4 NaN 5456 2417 7868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7877 42.356 NaN 690750 35 0 95879 0.327 + 1930 DADLREQAL 9 81 515.7618714507729 1029.5091899683457 2 515.7617797851562 MULTI HCD FTMS 0 0 0 7876 421154.15625 0.24815061780733413 6 -0.16811752319335938 1 Unmodified _DADLREQAL_ ENSG00000196878|ENST00000356082|LAMB3 151.47984550603806 7.261867933578587E-06 2 DAD{I|L}REQA{I|L} 9 0 + 101.06 0 0 9.816 9.816 89.743 0 0 0 0.7377371110665507 0.7377371110665507 0.7377371110665507 0.7377371110665507 0 3.079689690656103 1.5228787452803376 0.5451140161145328 1.3539171939081172 + + DAD{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}REQA{I|L};{[DA]|[EG]}D{I|L}RAADA{I|L};{[DA]|[EG]}D{I|L}RE[AG]A{I|L};DAD{I|L}RE[AG]A{I|L};DADR{I|L}EQA{I|L};DADR{I|L}E[AG]A{I|L};{[DA]|[EG]}[RV]EEQA{I|L};{[DA]|[EG]}[R{I|L}]DEQA{I|L};{[DA]|[EG]}[RV]EAADA{I|L} 9.816;9.7444;9.3746;8.8499;8.6552;8.4916;7.3308;6.6533;6.484;6.2835 +;+;-;-;-;-;-;-;-;- + 1862 + NaN NaN 189110.4 NaN 5457 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7878 42.361 NaN 282060 35 0 31342 0.261 + -1 YCDYFPVI 8 48 538.7410255798126 1075.467498226425 2 538.7408447265625 MULTI HCD FTMS 0 0 0 7876 89037.0234375 0.7960941526359164 1 -0.032947540283203125 2 Carbamidomethyl (C) _YC(Carbamidomethyl (C))DYFPVI_ REV__ENSG00000137944|ENST00000260508|KYAT3;REV__nc|ENSG00000137944|Q6YP21-3|KYAT3 8.593279151180031 0.5292430274356741 2 VEPV{I|L} 5 -1 30.445 0 0 2.8309 0 0 520.1295198260434 0 520.1295198260434 0 18.022562268522577 0 0 0 0.4247425010840047 0 0 0 VEPV{I|L} 2.8309 - 37 NaN NaN 116709.4 NaN 5458 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7879 42.364 NaN 219110 35 0 15647 0.261 + 1985 DASAEVERL 9 44 495.2485746062613 988.4825962793226 2 495.2481689453125 MULTI HCD FTMS 0 0 0 7876 88027.6953125 0.3915888884633491 -3 0.08917236328125 3 Unmodified _DASAEVERL_ ENSG00000130303|ENST00000252593|BST2;nc|ENSG00000130303|Q10589-2|BST2 96.93554129104106 0.004344229100022454 2 {[DA]|[EG]}SAEVER{I|L} 9 0 + 112.05 0 0 11.335 11.335 97.871 0 0 0 20.70107520596089 16.478174818886373 16.478174818886373 25 0 2.9247425010840047 1.6989700043360187 2.0228787452803374 0 + + {[DA]|[EG]}SAEVER{I|L};{[SA]|[TG]}DAEVER{I|L};{[DA]|[EG]}SVVDDR{I|L};{[SA]|[TG]}DVVDDR{I|L} 11.335;8.8064;5.3571;2.828 +;-;-;- + 205 NaN NaN 120457.7 NaN 5459 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7880 42.368 NaN 137240 35 0 16787 0.261 -1 RYLSPKYIKMF 11 46 487.9355264321726 1460.7847498967178 3 487.93505859375 MULTI HCD FTMS 0 0 0 7876 38300.71875 0.06507658567573141 18 -0.48099517822265625 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 5.523293073838413 0.3946973793746473 2 Y 1 -1 4.6041 0 0 0.31518 0 0 744.4273413047241 550.2700899713499 1294.697431276074 0 0 0 0 0 0 0 0 0 Y 0.31518 + + 29 + NaN NaN 103285 NaN 5460 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7881 42.371 NaN 61912 35 0 8202.6 0.261 -1 MPSSREDFL 9 33 549.2504159559672 1096.4862789787344 2 549.2499389648438 MULTI HCD FTMS 0 0 0 7876 26677.240234375 0.6465920243557487 1 -0.032947540283203125 5 Oxidation (M) _M(Oxidation (M))PSSREDFL_ ENSG00000171940|ENST00000371471|ZNF217 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}{I|L} 2 -1 21.722 0 0 1.981 0 0 818.3192616193375 0 818.3192616193375 0 3.5218251811136234 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L} 1.981 + + 6 NaN NaN 90539.4 NaN 5461 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7882 42.374 NaN 68526 35 0 9190 0.261 + 24515 RYLEKPMEI 9 33 589.8153497983772 1177.6161466635542 2 589.8153076171875 MULTI HCD FTMS 0 0 0 7876 37070.44921875 0.06918414017830284 24 -0.6324310302734375 6 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 K 1 8 11.99 0 0 1.0181 0 0 488.22861329414565 558.2679537408811 1046.4965670350268 0 0 0 0 0 0.5 0 0 0 + K 1.0181 + + 12 + NaN NaN 94439 NaN 5462 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7883 42.378 NaN 110300 35 0 11564 0.261 -1 HYMSINDSF 9 37 565.2347345190159 1128.4549161048317 2 565.2348022460938 MULTI HCD FTMS 0 0 0 7876 18197.025390625 0.30134471314657846 -8 0.21752548217773438 7 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 20.41453444215458 0.18397929046831515 2 DNDS{M(Oxidation (M))|F} 5 -1 52.959 0 0 4.693 0 0 532.2288685529312 0 532.2288685529312 0 52.95880017344075 0 0 0 1.5 0 0 0 DNDS{M(Oxidation (M))|F} 4.693 - 18 NaN NaN 114741.7 NaN 5463 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7884 42.381 NaN 41004 35 0 6716.9 0.261 + -1 SDEQPINWAM 10 18 603.7585216802313 NaN 0 603.7588500976562 PEAK HCD FTMS 0 0 0 7876 16659.2109375 0.8273732725420357 1 -0.032947540283203125 8 Oxidation (M) _SDEQPINWAM(Oxidation (M))_ REV__ENSG00000110328|ENST00000227756|GALNT18 2.735195868890462 0.33784334045437464 2 E 1 -1 5.4846 0 0 0.45496 0 0 325.1132825188625 748.3250216119749 1073.4383041308374 0 0 0 0 0 0 0 0 0 E 0.45496 + + 1 + NaN NaN 96896.5 NaN 5464 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7885 42.384 NaN 65081 35 0 14963 0.261 -1 CCHHHPHCH 9 20 612.7231743950861 NaN 0 612.7229614257812 PEAK HCD FTMS 0 0 0 7876 18221.26953125 1 0 0 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))CHHHPHC(Carbamidomethyl (C))H_ ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-2|ITPRID1;nc|ENSG00000180347|Q6ZRS4-3|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1 0.6014990680409731 0.29233206172879045 2 H 1 -1 2.2185 0 0 0.18133 0 0 686.1944434173221 397.15195642642817 1083.3463998437503 0 0 0 0 0 0 0 0 0 H 0.18133 + + 1 + NaN NaN 88133.2 NaN 5465 2418 7876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7887 42.389 NaN 364160 35 0 126080 0.327 + 34127 YNTTNTQVL 9 46 527.2643812301899 1052.5142095271797 2 527.2642822265625 MULTI HCD FTMS 0 0 0 7886 170912.015625 0.19916616321460603 7 -0.187957763671875 1 Unmodified _YNTTNTQVL_ REV__ENSG00000004846|ENST00000404938|ABCB5 13.90604991867851 0.24021115267848145 2 YV{I|L} 3 -1 31.198 0 0 2.9641 0 0 659.2900257794937 0 659.2900257794937 0 24.20818753952375 0 0 0 0.5 0 0 0 YV{I|L} 2.9641 - 11 NaN NaN 133252.6 NaN 5466 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7888 42.394 NaN 1045600 35 0 153590 0.261 + 5068 FDSYREKL 8 92 529.2691905697966 1056.523828206393 2 529.2509155273438 MULTI HCD FTMS 0 0 0 7886 30232.3125 0.6631768957399374 -1 0.032947540283203125 2 Unmodified _FDSYREKL_ REV__ENSG00000091127|ENST00000469408|PUS7;REV__nc|ENSG00000091127|Q96PZ0-2|PUS7 18.13498045792455 0.4603629008820478 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DDVKYA{I|L} 9 -1 + 58.901 0 0 5.575 5.575 88.954 0 0 0 6.623855178835925 2.990546760424273 2.990546760424273 10.831094029212558 0 0.2742275032520141 0 1.5189301784845295 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DDVKYA{I|L};[YV]SDVGVYR;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DD[YK]VA{I|L};{[{M(Oxidation (M))|F}D]|MM}S[VS]RYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[VS]RYA{I|L};{[{M(Oxidation (M))|F}D]|MM}V{[CA]|SS}RYA{I|L};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[WR]YA{I|L};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[VS]RYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[VS][YG]VA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[VS][VG]YA{I|L} 5.575;4.5498;3.7248;3.4932;3.1128;2.8432;2.1894;2.1409;1.968;1.968 -;-;-;-;-;-;-;-;-;- 1827 NaN NaN 239526.5 NaN 5467 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7889 42.397 NaN 284110 35 0 24685 0.261 + 24124 RYATQLQQI 9 79 560.8090693993734 1119.6035858655466 2 560.8090209960938 MULTI HCD FTMS 0 0 0 7886 88886.1484375 0.12575536601672618 8 -0.21435928344726562 3 Unmodified _RYATQLQQI_ CON__A2A4G1;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15 40.72490554402381 0.06201705472789164 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}QQ{I|L} 9 2 + 62.59 0 0 5.5904 5.5904 87.861 0 0 0 18.95750937337162 43.4212113284905 18.95750937337162 9.208187539523749 0 1.3996498648046138 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}Q[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RT[AG]{I|L}QQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}[AG]Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RT[AG]{I|L}[AG]Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RT[AG]{I|L}Q[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RTQ{I|L}[AG][AG]{I|L};[YR]ATQ{I|L}QQ{I|L};[YR]ATQ{I|L}[AG]Q{I|L} 5.5904;4.7679;4.7679;4.7679;3.9494;3.9494;3.9494;2.3536;1.5312 -;-;-;-;-;-;-;+;- + 683 NaN NaN 131414.4 NaN 5468 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7890 42.401 NaN 311970 35 0 44798 0.261 + 13065 KYLDNPNAL 9 62 524.2771782441433 1046.5398035550866 2 524.27685546875 MULTI HCD FTMS 0 0 0 7886 155273.9375 0.8021120966105495 -2 0.05933380126953125 4 Unmodified _KYLDNPNAL_ ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;nc|ENSG00000197256|Q63ZY3-3|KANK2 79.59630418116434 0.005983006570063981 2 [YK]{I|L}DN[NP]A{I|L} 9 0 + 59.798 0 0 5.7139 5.7139 88.109 0 0 0 7.147642715192504 41.8392541605164 7.147642715192504 9.208187539523749 0 1.805462187404089 0 0.6549471895720984 0.8494850021680094 + + [YK]{I|L}DN[NP]A{I|L};[YK]{I|L}DGG[NP]A{I|L};[YK]MP[HM]K{I|L};[YK]MP[HM]{I|L}K 5.7139;4.834;2.6245;1.7627 +;-;-;- + 113 NaN NaN 136038.3 NaN 5469 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7891 42.404 NaN 315700 35 0 29516 0.261 + 3919 EPSEVFINR 9 59 545.7800915142793 1089.5456300953585 2 545.7798461914062 MULTI HCD FTMS 0 0 0 7886 113369.0078125 0.7319676109406694 -4 0.12211990356445312 5 Unmodified _EPSEVFINR_ ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000121390|Q8WXF1-2|PSPC1 22.736283301280096 0.1639198954644489 2 [EP]SEV{M(Oxidation (M))|F}{I|L}[RN] 9 0 + 40.155 0 0 3.6855 3.6855 89.048 0 0 0 13.723637474483468 14.449689600073441 13.723637474483468 31.965175419594654 0 0 0 0 0.7302046884880937 + + [EP]SEV{M(Oxidation (M))|F}{I|L}[RN];[EP][{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]}{I|L}[RN] 3.6855;0.75171 +;- + 213 + NaN NaN 130830.2 NaN 5470 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7892 42.407 NaN 72182 35 0 11818 0.261 + 918 AYATHPFKF 9 39 541.2769093281277 1080.5392657230552 2 541.2769775390625 MULTI HCD FTMS 0 0 0 7886 23182.224609375 0.03511067146785781 18 -0.4644355773925781 6 Unmodified _AYATHPFKF_ ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7 13.042465956692817 0.2476723265019929 2 K{M(Oxidation (M))|F} 2 7 18.583 0 0 1.7198 0 0 787.3647328107437 0 787.3647328107437 0 7.865071892553814 0 0 0 0 0 0 0 + K{M(Oxidation (M))|F} 1.7198 + + 27 NaN NaN 105239.2 NaN 5471 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7893 42.411 NaN 113440 35 0 24281 0.261 -1 FPHSMEPQL 9 42 551.255312648637 1100.4960723640738 2 551.2547607421875 MULTI HCD FTMS 0 0 0 7886 28508.69921875 0.46555186050055664 -6 0.17477035522460938 7 Oxidation (M) _FPHSM(Oxidation (M))EPQL_ ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F}{I|L} 2 -1 20.969 0 0 1.9054 0 0 822.33012587715 0 822.33012587715 0 17.985775332874283 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.9054 - 11 NaN NaN 113416.3 NaN 5472 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7894 42.414 NaN 74369 35 0 12896 0.261 + 18485 MQWPREWDLPI 11 39 490.9118479530184 NaN 0 490.9122314453125 PEAK HCD FTMS 0 0 0 7886 12158.5185546875 0.29079171771933654 4 -0.10550308227539062 8 Unmodified _MQWPREWDLPI_ REV__nc|ENSG00000151665|Q07326-2|PIGF 1.214830529360525 0.33867401910978034 2 M 1 -1 2.2185 0 0 0.22642 0 0 698.7841928769369 146.96254907779533 845.7467419547322 0 0 0 0 0 0 0 0 0 M 0.22642 + + 1 + NaN NaN 103907.8 NaN 5473 2419 7886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7896 42.419 NaN 573370 35 0 156630 0.327 + 22990 RADQFEYVM 9 54 587.7635195260096 1173.5124861188192 2 587.763427734375 MULTI HCD FTMS 0 0 0 7895 368856.03125 0.7186686897260528 2 -0.05280303955078125 1 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 47.7319792270244 0.034743597693959835 2 {[QV]|[N{I|L}]|[RA]|[KV]}DQ{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 9 0 + 77.841 0 0 6.6332 6.6332 89.635 0 0 0 68.3771376077312 3.640078085766092 3.640078085766092 9.208187539523749 0 2.9247425010840047 0 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}DQ{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}D[AG]{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6.6332;5.8485 +;- + 153 + NaN NaN 172022.5 NaN 5474 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7897 42.423 NaN 622140 35 0 69056 0.261 + 22292 QPEHGPNTDLL 11 68 610.7990098377037 1219.5834667422073 2 610.7994995117188 MULTI HCD FTMS 0 0 0 7895 228759.984375 0.7453804466527922 -3 0.08899688720703125 2 Unmodified _QPEHGPNTDLL_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 33.4449034751529 0.1791669456720762 2 {NN|[MP]|[D{I|L}]|[EV]}[MN]G[DP]TD{I|L} 10 5 32.386 0 0 2.6555 0 0 0 145.09585224127378 145.09585224127378 14.427098394219357 0 0 0 0 0 1.3010299956639813 0.7614393726401688 0.28872548999643577 {NN|[MP]|[D{I|L}]|[EV]}[MN]G[DP]TD{I|L} 2.6555 - 509 NaN NaN 185144.9 NaN 5475 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7898 42.427 NaN 456040 35 0 92895 0.264 -1 0 50 421.3828715315008 2522.253570389405 6 421.896240234375 MULTI HCD FTMS 0 0 0 7895 3692.870361328125 0.4296052981369339 3 -0.07583999633789062 3 NaN NaN 2 G{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 21.682 0 0 0.85965 0 0 2153.0907418755364 0 2153.0907418755364 0 14.69273760456403 0 0 0 0 0 0 0 G{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.85965 - 33 + NaN NaN 153687.2 NaN 5476 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7899 42.43 NaN 172970 35 0 20855 0.261 + 7913 GADPSTVEM 9 55 453.6972606459463 905.3799683586926 2 454.2144470214844 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _GADPSTVEM_ ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554488-16554707:-|nuORF 10.073929032068715 0.27331982688540024 2 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 8 22.218 0 0 2.4541 0 0 122.04266368433453 0 122.04266368433453 0 5.307262395435966 0 0 0 0 0 0 0 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 2.4541 - 92 + NaN NaN 105358.3 NaN 5477 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7900 42.434 NaN 83868 35 0 12289 0.261 + 27825 TAYVGSAVM 9 29 457.71807585423 913.42159877526 2 457.7178955078125 MULTI HCD FTMS 0 0 0 7895 43551.234375 0.6717359944140874 2 -0.05280303955078125 5 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 41.8396318013385 0.056899836730939755 2 [YT]ASGVAV{M(Oxidation (M))|F} 9 4 + 65.099 0 0 7.1269 7.1269 87.6 0 0 0 4.018637558036673 4.018637558036673 4.018637558036673 4.018637558036673 0 0.9247425010840047 0 0.4247425010840047 0 [YT]ASGVAV{M(Oxidation (M))|F};[TA]YVGSAV{M(Oxidation (M))|F};[YT]AVGSAV{M(Oxidation (M))|F};[YT]{[QS]|[NT]}VAV{M(Oxidation (M))|F};[YT]AV{[QS]|[NT]}V{M(Oxidation (M))|F};[TA]YSGVAV{M(Oxidation (M))|F};[TA]YV{[QS]|[NT]}V{M(Oxidation (M))|F};[YT]A[DG][K{I|L}]{M(Oxidation (M))|F};[TA]Y[DG][K{I|L}]{M(Oxidation (M))|F} 7.1269;6.687;6.6619;5.901;5.6538;5.6417;5.461;3.0299;1.9602 -;+;-;-;-;-;-;-;- + 152 NaN NaN 97596.5 NaN 5478 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7901 42.437 NaN 153760 35 0 26379 0.261 + 5887 FPDHVDTQHL 10 57 403.5281633200407 1207.562660560322 3 403.8627014160156 MULTI HCD FTMS 0 0 0 7895 21980.90625 0.6744754595364431 1 -0.02643585205078125 6 Unmodified _FPDHVDTQHL_ ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8 19.986897341741983 0.32416132266773673 2 PE 2 9 20.969 0 0 1.7365 0 0 963.4404301707173 0 963.4404301707173 0 2.7422750325201406 0 0 0 0 0 0 0 PE 1.7365 - 15 NaN NaN 106772.7 NaN 5479 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7902 42.44 NaN 160200 35 0 26293 0.261 + 11691 KAFESEPTL 9 51 511.2634905609103 NaN 0 511.2631530761719 PEAK HCD FTMS 0 0 0 7895 51064.66015625 0.36073468104201994 -4 0.1220245361328125 7 Unmodified _KAFESEPTL_ ENSG00000197442|ENST00000359015|MAP3K5 41.95555342248728 0.07200381670044957 2 YESE 4 6 32.269 0 0 3.1621 0 0 166.13640387397066 343.17698084049067 509.31338471446134 0 0 0 0 0 1.3252574989159953 0 0.6989700043360187 0 YESE 3.1621 - 55 + NaN NaN 109422.1 NaN 5480 2420 7895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7904 42.445 NaN 189460 35 0 24562 0.327 + 17062 LYKPDSNEF 9 46 556.7666980427891 1111.5188431523782 2 556.7666625976562 MULTI HCD FTMS 0 0 0 7903 117115.4375 0.6105963241804564 2 -0.049404144287109375 1 Unmodified _LYKPDSNEF_ ENSG00000181433|ENST00000370709|SAGE1 57.72198328787511 0.020768266150574023 2 [Y{I|L}]K[DP][NS]E{M(Oxidation (M))|F} 9 0 + 54.6 0 0 4.9122 4.9122 91.483 0 0 0 0.4305997461732147 32.60984977102048 0.4305997461732147 54.599549814380666 0 1.5 2 0 0.4247425010840047 + + [Y{I|L}]K[DP][NS]E{M(Oxidation (M))|F} 4.9122 + + 29 NaN NaN 111792.7 NaN 5481 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7905 42.45 NaN 130810 35 0 35904 0.261 -1 RYKLYQEMF 9 35 647.3185878444 1292.6226227555999 2 647.3184204101562 MULTI HCD FTMS 0 0 0 7903 62444.03515625 0.45244142226990197 3 -0.079071044921875 2 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 13.90604991867851 0.24021115267848145 2 {I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 6 -1 25.406 0 0 1.9655 0 0 447.25911147285314 0 447.25911147285314 0 23.416375079047498 0 0 0 0 0 0 0 {I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 1.9655 - 45 NaN NaN 102668.7 NaN 5482 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7906 42.453 NaN 69540 35 0 9612.1 0.264 -1 ACPEPCSSM 9 35 499.1748818294003 996.3352107256006 2 499.1746520996094 MULTI HCD FTMS 0 0 0 7903 43133.1015625 0.6821074446074029 6 -0.15826034545898438 3 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))PEPCSSM(Oxidation (M))_ ENST00000409600.5_1_2:201687348-201687408:+|nuORF 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4658 0 0 831.2892340183726 0 831.2892340183726 0 3.36696871556164 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4658 + + 6 + NaN NaN 95826.9 NaN 5483 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7907 42.457 NaN 228100 35 0 20020 0.261 + 4704 EYQIKTNQL 9 54 568.8009370552801 1135.58732117736 2 568.8004150390625 MULTI HCD FTMS 0 0 0 7903 59442.53515625 0.3512369852976749 -3 0.08904647827148438 4 Unmodified _EYQIKTNQL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF 103.41943736471063 0.004016698775839292 2 [YE]Q{I|L}KTN[Q{I|L}] 9 0 + 73.936 0 0 6.5108 6.5108 89.426 0 0 0 51.539843494254995 8.256886463274284 8.256886463274284 9.208187539523749 0 1.555462187404089 1.3010299956639813 0.3807196863200844 1.524227503252014 + + [YE]Q{I|L}KTN[Q{I|L}];[YE][AG]{I|L}KTN[Q{I|L}];[YE]Q{I|L}KTGG[Q{I|L}];[YE][AG]{I|L}KTGG[Q{I|L}] 6.5108;5.6999;5.6999;4.8929 +;-;-;- + 235 + NaN NaN 121575.2 NaN 5484 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7908 42.46 NaN 43817 35 0 6701.7 0.261 + -1 LLHCIKWD 8 21 542.7852285930807 1083.5559042529612 2 542.78515625 MULTI HCD FTMS 0 0 0 7903 21680.90625 0.5242724499262943 5 -0.13185882568359375 5 Carbamidomethyl (C) _LLHC(Carbamidomethyl (C))IKWD_ REV__ENST00000267984.3_1_15:81295820-81295997:+|nuORF 5.230669730166228 0.5342319408533849 2 {I|L}P 2 -1 20.969 0 0 1.9352 0 0 0 870.3938082330686 870.3938082330686 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 1.9352 - 1 + NaN NaN 89676.5 NaN 5485 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7909 42.463 NaN 208100 35 0 29741 0.261 -1 SAAAVDAGMAM 11 46 505.71777472882127 1009.4209965244426 2 505.7175598144531 MULTI HCD FTMS 0 0 0 7903 40777.57421875 0.8135901600337374 -7 0.20459747314453125 6 Oxidation (M) _SAAAVDAGMAM(Oxidation (M))_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 12.240655878213236 0.35042917576941135 2 TVED 4 -1 19.412 0 0 1.9231 0 0 166.0219619558863 396.18848768264144 562.2104496385277 0 0 0 0 0 0.5 0 0 0 TVED 1.9231 - 38 + NaN NaN 105625.8 NaN 5486 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7910 42.467 NaN 101160 35 0 8706.9 0.261 -1 IATTEALSM 9 51 476.7362921104965 951.458031287793 2 476.736328125 MULTI HCD FTMS 0 0 0 7903 36366.15625 0.8747116235465141 -1 0.02643585205078125 7 Oxidation (M) _IATTEALSM(Oxidation (M))_ ENSG00000157601|ENST00000398598|MX1;ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;nc|ENSG00000157601|P20591-2|MX1 30.636539890814138 0.10832830463492794 2 QA{I|L}S{M(Oxidation (M))|F} 5 -1 49.068 0 0 5.1571 0 0 387.2130604474625 0 387.2130604474625 0 34.463950151760656 0 0 0 1.5 0 0 0 QA{I|L}S{M(Oxidation (M))|F} 5.1571 - 43 NaN NaN 100462.2 NaN 5487 2421 7903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7912 42.472 NaN 641720 35 0 130100 0.327 -1 YTMIMVLIFF 10 55 431.8910837320001 NaN 0 431.8810729980469 PEAK HCD FTMS 0 0 0 7911 7888.58056640625 0.3785776423085049 -30 0.7799797058105469 1 Oxidation (M) _YTMIM(Oxidation (M))VLIFF_ ENSG00000125304|ENST00000376387|TM9SF2 1.9063754702782614 0.33855269584400594 2 Y 1 -1 5.4846 0 0 0.63643 0 0 52.395374395837685 643.2888887994749 695.6842631953126 0 0 0 0 0 0 0 0 0 Y 0.63643 + + 2 + NaN NaN 195803 NaN 5488 2422 7911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7913 42.476 NaN 489920 35 0 48880 0.261 + 12328 KMPKFKMPSF 10 76 419.5558466311776 1255.6457104937328 3 419.5558166503906 MULTI HCD FTMS 0 0 0 7911 229527.921875 0.8272334726604664 4 -0.10549163818359375 2 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 45.602519287354625 0.09678874836934029 2 KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PS{M(Oxidation (M))|F} 10 0 + 85.225 0 0 6.7873 6.7873 94.634 0 0 0 79.51155392100631 16.532125137753425 16.532125137753425 56.569269189356525 0 1.7753187046026264 0 0.3807196863200844 0 + + KMPK{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}RK[EP][RH]S{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PKY[PS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[KP]MKY[PS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F} 6.7873;2.2821;2.2249;1.7281 +;-;-;- + 214 + NaN NaN 171996.3 NaN 5489 2422 7911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7914 42.48 NaN 282090 35 0 66939 0.261 + 11442 IYQDRDQFAKL 11 47 466.2454675631659 1395.7145732896977 3 466.2453308105469 MULTI HCD FTMS 0 0 0 7911 95588.8046875 0.9183705300396483 -1 0.0263671875 3 Unmodified _IYQDRDQFAKL_ ENSG00000132589|ENST00000394908|FLOT2;ENST00000577789.5_1_17:27207581-27224656:-|nuORF 14.170726826480097 0.3336124043171337 2 {I|L}YQ 3 8 57.945 0 0 4.1517 0 0 0 988.484465989941 988.484465989941 50.955612550363796 0 0 0 0 0.75 2 0 0.4247425010840047 + {I|L}YQ 4.1517 + + 28 + NaN NaN 126623.9 NaN 5490 2422 7911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7915 42.483 NaN 115710 35 0 27084 0.261 + 2330 DNAPEFPF 8 39 468.7087464618926 NaN 0 468.6935119628906 PEAK HCD FTMS 0 0 0 7911 8172.07177734375 0.8665629294589404 -4 0.11541366577148438 4 Unmodified _DNAPEFPF_ ENSG00000099834|ENST00000397542|CDHR5;nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5 2.302733041254933 0.38822285293237185 2 D 1 7 5.4846 0 0 0.58633 0 0 427.2369265727651 390.1157320611938 817.352658633959 0 0 0 0 0 0 0 0 0 + D 0.58633 + + 4 + NaN NaN 104522.1 NaN 5491 2422 7911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7916 42.486 NaN 139950 35 0 8997.8 0.261 + 2434 DPTDVAALR 9 59 479.2539749631422 956.4933969930844 2 479.253173828125 MULTI HCD FTMS 0 0 0 7911 44096.21484375 1 0 0 5 Unmodified _DPTDVAALR_ ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20 49.55428908609986 0.03219431099695407 2 [DP]TDVAA[R{I|L}] 9 0 + 55.072 0 0 5.7577 5.7577 91.452 0 0 0 38.082137524177995 2.632192780232785 2.632192780232785 24.83288122256525 0 2.1989700043360187 0 0.5 0 + + [DP]TDVAA[R{I|L}];[DP]TD[Q{I|L}][R{I|L}];[DP]TN{[QN]|[E{I|L}]|[KN]}[R{I|L}];[DP]TAA[DV][R{I|L}];[DP]TGG{[QN]|[E{I|L}]|[KN]}[R{I|L}] 5.7577;3.1614;2.0093;1.4863;1.0409 +;-;-;-;- + 175 + NaN NaN 111525.7 NaN 5492 2422 7911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7917 42.49 NaN 39080 35 0 5144.3 0.262 + 16414 LSKILRAKKHK 11 30 441.29748444557794 NaN 0 441.29754638671875 PEAK HCD FTMS 0 0 0 7911 12597.677734375 0.47644778569607205 13 -0.3458824157714844 6 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87333.2 NaN 5493 2422 7911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7919 42.495 NaN 1351800 35 0 480190 0.327 + 30611 VPCKVEPGL 9 71 471.2599702188261 940.5053875044522 2 471.2596435546875 MULTI HCD FTMS 0 0 0 7918 762214.6875 0.9884818214585872 1 -0.029666900634765625 1 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 89.40071534611396 0.0045416704840156395 2 [VP]CKVEPG{I|L} 9 0 + 69.84 0 0 7.4258 7.4258 86.796 0 0 0 19.001583094130922 49.03827484987046 19.001583094130922 0.796896906561031 0 2.094187677400525 1.3979400086720375 0.3807196863200844 0 + + [VP]CKVEPG{I|L};[VP]CKEVPG{I|L};[VP]CKVEPAV;[VP]CKEVPAV;[VP]CKVEAPV;[VP]CKEVAPV;{[CP]|[EA]}VKVEPG{I|L};{[CP]|[EA]}VKVEPAV;{[CP]|[EA]}VKEVPG{I|L};{[CP]|[EA]}KVVEPG{I|L} 7.4258;7.3411;7.2386;7.1539;6.7444;6.6596;4.9151;4.7278;4.4588;4.4018 +;-;-;-;-;-;-;-;-;- + 423 NaN NaN 290857.5 NaN 5494 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7920 42.499 NaN 183660 35 0 23977 0.261 + 7959 GEDLRVTQI 9 62 515.7798253479822 NaN 0 515.7618408203125 PEAK HCD FTMS 0 0 0 7918 4323.11328125 0.5823874572076511 3 -0.08245468139648438 2 Unmodified _GEDLRVTQI_ DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 10.073929032068715 0.24642998803896465 2 AQER{I|L}D 6 8 31.771 0 0 3.0859 0 0 131.13161859490225 183.04099451236564 314.1726131072679 0 0 0 0 0 0 0 0.6109243748081782 0 AQER{I|L}D 3.0859 - 111 + NaN NaN 116758.4 NaN 5495 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7921 42.503 NaN 277280 35 0 29463 0.261 + 226 AFDASRTSF 9 62 501.23805829766644 1000.4615636621329 2 501.2378234863281 MULTI HCD FTMS 0 0 0 7918 83256.90625 0.8857597669022623 1 -0.029666900634765625 3 Unmodified _AFDASRTSF_ ENSG00000105245|ENST00000252891|NUMBL 63.227496030279354 0.01306643085373406 2 {[MS]|[{M(Oxidation (M))|F}A]}DAGVSTS{M(Oxidation (M))|F} 10 3 {[MS]|[{M(Oxidation (M))|F}A]} + + 66.812 3.7236 1.7073 6.6781 6.6781 65.062 0 0 0 0 30.137029029675787 0 0 0 2.5356668758921828 0 0.8882104921644451 0 {[MS]|[{M(Oxidation (M))|F}A]}DAGVSTS{M(Oxidation (M))|F} 6.6781 - 318 + NaN NaN 122913.9 NaN 5496 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7922 42.506 NaN 185960 35 0 44713 0.261 + -1 KKCQYLRE 8 47 562.7954132496434 NaN 0 562.81396484375 PEAK HCD FTMS 0 0 0 7918 6862.2265625 0.42286590202108976 10 -0.2668914794921875 4 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))QYLRE_ REV__ENSG00000198028|ENST00000301480|ZNF560 8.593279151180031 0.38822285293237185 2 S{I|L} 2 -1 9.464 0 0 0.84231 0 0 321.1423879233117 599.2943209283811 920.4367088516929 0 0 0 0 0 0 0 0 0 S{I|L} 0.84231 - 27 + NaN NaN 109578.1 NaN 5497 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7923 42.509 NaN 270480 35 0 34844 0.261 + 5678 FPAEAGRDTL 10 47 538.7721485971304 1075.5297442610606 2 538.7718505859375 MULTI HCD FTMS 0 0 0 7918 49864.29296875 0.39829534300006003 -8 0.22762298583984375 5 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 22.65808497894818 0.29917593477267174 2 AEAPE 5 7 47.691 0 0 4.4342 0 0 560.2917347638687 0 560.2917347638687 0 40.70107520596089 0 0 0 1.1237125054200234 0 0 0 AEAPE 4.4342 - 27 NaN NaN 123420.7 NaN 5498 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7924 42.513 NaN 253290 35 0 36994 0.261 + 631 APHEDTLSL 9 56 491.7456649069769 981.4767768807538 2 491.7453308105469 MULTI HCD FTMS 0 0 0 7918 76150.59375 0.275218157932067 -5 0.13845062255859375 6 Unmodified _APHEDTLSL_ ENSG00000137857|ENST00000389037|DUOX1;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2 32.30548876998284 0.10066689432505688 2 {M(Oxidation (M))|F}T{I|L}S{I|L} 5 5 45.004 0 0 4.5853 0 0 402.1877613751969 0 402.1877613751969 0 31.90479035626617 0 0 0 0.7396518287104438 0 0.805462187404089 0 {M(Oxidation (M))|F}T{I|L}S{I|L} 4.5853 - 52 NaN NaN 134209.6 NaN 5499 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7925 42.516 NaN 66402 35 0 16000 0.261 -1 VYCKRKSRV 9 26 598.3399703750314 1194.6653878168627 2 598.3399047851562 MULTI HCD FTMS 0 0 0 7918 19353.208984375 0.2602252632127407 4 -0.108856201171875 7 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))KRKSRV_ ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 1.844237919475145 0.33703635659052655 2 P 1 -1 6.9897 0 0 0.58508 0 0 615.4043547262028 479.17731653385005 1094.5816712600529 0 0 0 0 0 0 0 0 0 P 0.58508 - 2 + NaN NaN 93312.1 NaN 5500 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7926 42.519 NaN 36164 35 0 7320.8 0.261 + 35419 YYEEQHPEL 9 18 604.2670384843465 1206.5195240354929 2 604.2666015625 MULTI HCD FTMS 0 0 0 7918 13814.8408203125 0.006449517562270191 66 -1.7993087768554688 8 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 10.823927491677226 0.26684000660059787 2 YYE 3 6 38.952 0 0 3.2285 0 0 0 748.3248385065061 748.3248385065061 38.95242492728684 0 0 0 0 0.4247425010840047 2 0.4247425010840047 0 + YYE 3.2285 + + 2 + NaN NaN 94168.3 NaN 5501 2423 7918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7928 42.524 NaN 273910 35 0 27330 0.327 + 1986 DASAEVERL 9 49 495.2485746062613 988.4825962793226 2 495.2483825683594 MULTI HCD FTMS 0 0 0 7927 128007.2265625 0.5694367822187834 3 -0.07918930053710938 1 Unmodified _DASAEVERL_ ENSG00000130303|ENST00000252593|BST2;nc|ENSG00000130303|Q10589-2|BST2 107.09958533191995 0.0034159042678574016 2 {[DA]|[EG]}SAEVER{I|L} 9 0 + 115.54 0 0 11.689 11.689 97.892 0 0 0 24.13734275855269 85.57827834592722 24.13734275855269 25 0 2.9247425010840047 1.6989700043360187 2.3723637474483468 0 + + {[DA]|[EG]}SAEVER{I|L};{[SA]|[TG]}DAEVER{I|L};{[DA]|[EG]}SVVDDR{I|L};{[SA]|[TG]}DVVDDR{I|L} 11.689;9.1599;5.7107;3.1816 +;-;-;- + 199 NaN NaN 121135.8 NaN 5502 2424 7927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7929 42.529 NaN 230160 35 0 25227 0.261 + 11698 KAKSSLLE 8 59 438.2635523618724 874.5125517905449 2 438.26324462890625 MULTI HCD FTMS 0 0 0 7927 99924.8984375 0.3896076121236372 21 -0.5367813110351562 2 Unmodified _KAKSSLLE_ REV__ENSG00000134369|ENST00000685211|NAV1;REV__nc|ENSG00000134369|Q8NEY1-2|NAV1;REV__nc|ENSG00000134369|Q8NEY1-3|NAV1;REV__nc|ENSG00000134369|Q8NEY1-4|NAV1;REV__nc|ENSG00000134369|Q8NEY1-6|NAV1;REV__nc|ENSG00000134369|Q8NEY1-7|NAV1;REV__nc|ENSG00000134369|Q8NEY1|NAV1 2.302733041254933 0.5385759549224092 2 M 1 -1 4.6041 0 0 0.52648 0 0 344.2544372284056 396.1956881158813 740.4501253442869 0 0 0 0 0 0 0 0 0 M 0.52648 - 11 + NaN NaN 122616.8 NaN 5503 2424 7927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7930 42.532 NaN 488330 35 0 45970 0.261 + 25191 SANLEEVTM 9 65 505.229047713681 1008.443542494162 2 505.2287292480469 MULTI HCD FTMS 0 0 0 7927 156173.09375 0.2531026932043508 -4 0.10550689697265625 3 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 110.5527297667825 0.0028521687250969148 2 [PS][KS]DEVT{M(Oxidation (M))|F} 9 4 + 72.241 0 0 7.1636 7.1636 91.789 0 0 0 4.422218047356338 61.563411771301304 4.422218047356338 11.240691938389219 0 1.5 0 1.360924374808178 1.1747425010840047 [PS][KS]DEVT{M(Oxidation (M))|F};{[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F};{[SA]|[TG]}GG{I|L}EEVT{M(Oxidation (M))|F} 7.1636;6.0489;5.1358 -;+;- + 424 NaN NaN 159714.2 NaN 5504 2424 7927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7931 42.536 NaN 101170 35 0 14332 0.261 -1 HYMSINDSF 9 34 565.2347345190159 1128.4549161048317 2 565.234375 MULTI HCD FTMS 0 0 0 7927 35170.88671875 0.5824336968190879 -2 0.052703857421875 4 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 31.26834338654808 0.10542797264966089 2 NDS{M(Oxidation (M))|F} 4 -1 54.553 0 0 4.8343 0 0 647.2739735334 0 647.2739735334 0 54.55259398656281 0 0 0 1.8807196863200843 0 0.3807196863200844 0 NDS{M(Oxidation (M))|F} 4.8343 + + 19 NaN NaN 104537.6 NaN 5505 2424 7927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7932 42.539 NaN 58094 35 0 8511.7 0.261 + 6138 FPEGNPAKI 9 34 486.761230136387 971.507907339574 2 486.7605285644531 MULTI HCD FTMS 0 0 0 7927 32575.935546875 0.710899356652513 3 -0.07918930053710938 5 Unmodified _FPEGNPAKI_ ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 22.65808497894818 0.16459551161911185 2 {M(Oxidation (M))|F}PE[NG][PA]K{I|L} 9 0 + 33.618 0 0 3.4604 3.4604 88.991 0 0 0 8.401662231496736 10.430599746173222 8.401662231496736 33.618187372417346 0 1.3494850021680094 0 0 0 + + {M(Oxidation (M))|F}PE[NG][PA]K{I|L} 3.4604 + + 12 + NaN NaN 104558.3 NaN 5506 2424 7927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7933 42.542 NaN 227410 35 0 69087 0.261 -1 0 47 415.21357601572674 414.20629954912675 1 416.2276306152344 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 4.1017 0 0 249.127211269633 0 249.127211269633 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 4.1017 - 2 + NaN NaN 134207.5 NaN 5507 2424 7927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7935 42.548 NaN 734190 35 0 113930 0.327 + 5063 FDSFSSLVR 9 72 529.2691905697966 1056.523828206393 2 529.2509155273438 MULTI HCD FTMS 0 0 0 7934 14040.3798828125 0.3079901858547228 5 -0.12854385375976562 1 Unmodified _FDSFSSLVR_ LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant 14.838274106304384 0.23215694253501695 2 DSDVGVYR 8 6 47.617 0 0 4.507 0 0 147.10730387651046 0 147.10730387651046 0 -9.37022187087372 -9.37022187087372 0 0 0 0 0.805462187404089 0 DSDVGVYR 4.507 - 735 + NaN NaN 200302.2 NaN 5508 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7936 42.552 NaN 484300 35 0 76497 0.261 + 14650 LGHEEDYAL 9 70 523.7431955872148 1045.4718382412295 2 523.742919921875 MULTI HCD FTMS 0 0 0 7934 263090.4375 0.5888519047839871 -2 0.05272674560546875 2 Unmodified _LGHEEDYAL_ ENSG00000100077|ENST00000324198|GRK3;ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF 42.09456458481378 0.05572955244001856 2 SDYA{I|L} 5 5 46.414 0 0 4.4396 0 0 478.21177870918126 0 478.21177870918126 0 21.352744048435923 0 0 0 0.805462187404089 0 0.7302046884880937 0 SDYA{I|L} 4.4396 - 405 NaN NaN 159714.7 NaN 5509 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7937 42.556 NaN 278040 35 0 27641 0.261 -1 FSFCFLNR 8 58 545.7615853499052 NaN 0 545.77978515625 PEAK HCD FTMS 0 0 0 7934 3481.88623046875 0.901073234393363 2 -0.05612945556640625 3 Carbamidomethyl (C) _FSFC(Carbamidomethyl (C))FLNR_ ENST00000579695.5_1_17:38078509-38078590:-|nuORF 18.13498045792455 0.38579626240450227 2 {I|L}{M(Oxidation (M))|F}V[DG]S 6 -1 21.732 0 0 1.9946 0 0 306.1287666673201 162.05585657291252 468.18462324023267 0 0 0 0 0 0.3054621874040891 0 0.9291746928241125 0 {I|L}{M(Oxidation (M))|F}V[DG]S 1.9946 - 78 + NaN NaN 121083.9 NaN 5510 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7938 42.559 NaN 103890 35 0 26811 0.261 + 8631 HEFMEAQPL 9 34 551.255312648637 1100.4960723640738 2 551.254638671875 MULTI HCD FTMS 0 0 0 7934 61236.35546875 1 0 0 4 Unmodified _HEFMEAQPL_ REV__ENSG00000127603|ENST00000564288|MACF1;REV__ENST00000476350.1_1_1:39768622-39838291:+|nuORF;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;REV__MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;REV__nc|ENSG00000127603|Q9UPN3-2|MACF1;REV__nc|ENSG00000127603|Q9UPN3-3|MACF1;REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1 10.823927491677226 0.26684000660059787 2 Q 1 -1 1.2591 0 0 0.11441 0 0 633.2547221216895 336.1548250787719 969.4095472004615 0 0 0 0 0 0 0 0 0 Q 0.11441 + + 5 + NaN NaN 95819.6 NaN 5511 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7939 42.562 NaN 397570 35 0 122880 0.263 + 35557 YYHARVYEF 9 47 416.53304981949 1246.57732005867 3 416.5326843261719 MULTI HCD FTMS 0 0 0 7934 100709.140625 0.278812984286961 -5 0.12856674194335938 5 Unmodified _YYHARVYEF_ ENSG00000108344|ENST00000264639|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3 4.5288652416199255 0.31668488241058723 2 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.764 0 0 1081.4982928143324 0 1081.4982928143324 0 15 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.764 + + 9 + NaN NaN 158615.7 NaN 5512 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7940 42.566 NaN 137680 35 0 12365 0.261 + 27383 SYSQGASAPF 10 53 507.730715297522 1013.446877661844 2 507.730224609375 MULTI HCD FTMS 0 0 0 7934 56776.890625 0.9267087696103916 -2 0.05272674560546875 6 Unmodified _SYSQGASAPF_ REV__CFHR4|p.A47S|1|0.14|ENSG00000134365|chr1:196902501-196902501|G/T|missense_variant 16.149105407346934 0.3600587335443843 2 G{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5625 0 0 791.3468695825457 0 791.3468695825457 0 -2.090606190045108 -2.090606190045108 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 2.5625 - 21 + NaN NaN 107090.2 NaN 5513 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7941 42.569 NaN 145270 35 0 18027 0.261 + 23026 RCHMAMTTL 9 48 532.2438804612018 NaN 0 532.2565307617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RCHMAMTTL_ ENST00000368761.9_1_6:111901553-111912487:-|nuORF 3.5964929083625545 0.27781873954207675 2 QT 2 8 10.261 0 0 0.96575 0 0 130.98915616624464 699.3573702447874 830.3465264110321 0 0 0 0 0 0 0 0.3807196863200844 0 QT 0.96575 - 22 + NaN NaN 110198.8 NaN 5514 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7942 42.572 NaN 35658 35 0 4265.6 0.261 + 24516 RYLEKPMEI 9 27 589.8153497983772 1177.6161466635542 2 590.3177490234375 MULTI HCD FTMS 0 0 0 7934 13443.1513671875 0.039952538111468455 30 -0.8036384582519531 8 Unmodified _RYLEKPMEI_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 3.2813086475875832 0.32614229037259 2 K 1 8 7.7866 0 0 0.66122 0 0 488.22625677862305 558.2662447565061 1046.4925015351291 0 0 0 0 0 0.3807196863200844 0 0 0 + K 0.66122 + + 2 + NaN NaN 89026.2 NaN 5515 2425 7934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7944 42.577 NaN 501980 35 0 63374 0.327 + 22293 QPEHGPNTDLL 11 68 610.7990098377037 1219.5834667422073 2 610.7990112304688 MULTI HCD FTMS 0 0 0 7943 213807.21875 0.6966590797987602 3 -0.07913970947265625 1 Unmodified _QPEHGPNTDLL_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 40.23920728925047 0.13540949088500095 2 {NN|[MP]|[D{I|L}]|[EV]}[MN]G[DP]TD{I|L} 10 5 26.941 0 0 2.209 0 0 0 145.09457946089734 145.09457946089734 0.9801371741293252 0 0 0 0 0 1.5228787452803376 0.3807196863200844 0 {NN|[MP]|[D{I|L}]|[EV]}[MN]G[DP]TD{I|L} 2.209 - 134 NaN NaN 168723.2 NaN 5516 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7945 42.582 NaN 474590 35 0 111300 0.262 + 8994 HPEEGDLDL 9 44 512.732739014932 1023.450925096664 2 512.7325439453125 MULTI HCD FTMS 0 0 0 7943 258708.765625 0.2080134240295808 -10 0.2803192138671875 2 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 85.27202061508552 0.004649858145912257 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 72.63 0 0 7.0965 7.0965 94.149 0 0 0 4.137342758552691 36.18948444925195 4.137342758552691 30.713337517843655 0 1.805462187404089 0 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L} 7.0965;4.0956 +;- + 89 NaN NaN 163031.2 NaN 5517 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7946 42.585 NaN 123600 35 0 29671 0.261 -1 RADQFEYVM 9 41 587.7635195260096 1173.5124861188192 2 587.7633666992188 MULTI HCD FTMS 0 0 0 7943 60886.29296875 0.11862913625633753 8 -0.20410537719726562 3 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 17.11289562659939 0.2125047172822487 2 HYV{M(Oxidation (M))|F} 4 -1 45.433 0 0 3.8715 0 0 609.267016003388 0 609.267016003388 0 45.43305028184122 0 0 0 1.5 0 0 0 HYV{M(Oxidation (M))|F} 3.8715 - 32 + NaN NaN 102018.6 NaN 5518 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7947 42.589 NaN 131830 35 0 18757 0.264 -1 RYQQWMERF 9 51 453.88003143201183 1358.6182648962356 3 453.8802490234375 MULTI HCD FTMS 0 0 0 7943 40399.57421875 0.06901950350066255 40 -1.0665359497070312 4 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 24.881564428377168 0.14538514251145815 2 [YR]QQW[YG][DP]{M(Oxidation (M))|F} 10 -1 [YR]Q + + 24.481 2.2403 0.50094 1.8019 1.8019 59.742 0 0 0 0 20.29963223377443 0 0 0 0.8494850021680094 0 0 0 [YR]QQW[YG][DP]{M(Oxidation (M))|F} 1.8019 - 72 + NaN NaN 120038.2 NaN 5519 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7948 42.592 NaN 142940 35 0 19010 0.261 -1 RYLSPKYIKMF 11 56 487.9355264321726 1460.7847498967178 3 488.2705383300781 MULTI HCD FTMS 0 0 0 7943 21799.025390625 0.0464426206593416 27 -0.7113113403320312 5 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 5.523293073838413 0.3946973793746473 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]A{M(Oxidation (M))|F} 6 -1 16.839 0 0 1.1528 0 0 0 702.3651937768618 702.3651937768618 7.375525576268775 0 0 0 0 0 1.6989700043360187 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]A{M(Oxidation (M))|F} 1.1528 - 25 NaN NaN 123557 NaN 5520 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7949 42.595 NaN 99137 35 0 6226.2 0.261 + 30190 VHMEMAQI 8 48 479.72881826925743 957.4430836053149 2 479.7279052734375 MULTI HCD FTMS 0 0 0 7943 36074.20703125 1 0 0 6 Unmodified _VHMEMAQI_ CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;ENSG00000171811|ENST00000368586|CFAP46 11.640296217721598 0.50814828952472 2 TDVVAQ{I|L} 7 5 31.955 0 0 3.3375 0 0 213.02799679066487 0 213.02799679066487 0 10.705415062120323 0 0 0 0.4247425010840047 0 0.5 0.4247425010840047 TDVVAQ{I|L} 3.3375 - 127 + NaN NaN 104963.4 NaN 5521 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7950 42.599 NaN 85373 35 0 10514 0.261 + 5888 FPDHVDTQHL 10 56 403.5281633200407 1207.562660560322 3 403.5283203125 MULTI HCD FTMS 0 0 0 7943 12813.2265625 0.3892804416658359 8 -0.20410537719726562 7 Unmodified _FPDHVDTQHL_ ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8 4.406150317652783 0.4519812505573615 2 PE 2 9 20.969 0 0 1.7365 0 0 963.4415023930349 0 963.4415023930349 0 15.484550065040281 0 0 0 0 0 0 0 PE 1.7365 - 4 NaN NaN 89023.7 NaN 5522 2426 7943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7952 42.604 NaN 227900 35 0 23099 0.327 + 4705 EYQIKTNQL 9 54 568.8009370552801 1135.58732117736 2 568.80078125 MULTI HCD FTMS 0 0 0 7951 144013.671875 0.8509550916370209 3 -0.07241439819335938 1 Unmodified _EYQIKTNQL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF 61.60191391372663 0.015340508911304802 2 [YE]Q{I|L}KTN[Q{I|L}] 9 0 + 52.686 0 0 4.6396 4.6396 86.392 0 0 0 22.465074002798033 5.6424927368725974 5.6424927368725974 9.208187539523749 0 1.360924374808178 0 0.3252574989159953 0.7742275032520141 + + [YE]Q{I|L}KTN[Q{I|L}];[YE]Q{I|L}KTGG[Q{I|L}];[YE][AG]{I|L}KTN[Q{I|L}];[YE][AG]{I|L}KTGG[Q{I|L}] 4.6396;3.8287;3.8287;3.0217 +;-;-;- + 427 + NaN NaN 136543.7 NaN 5523 2427 7951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7953 42.608 NaN 190150 35 0 13633 0.261 -1 GTFAMAWTM 9 59 516.2200261496191 1030.4254993660381 2 516.2197875976562 MULTI HCD FTMS 0 0 0 7951 80583.4296875 0.9970542726627629 -8 0.21435928344726562 2 Oxidation (M) _GTFAMAWTM(Oxidation (M))_ ENST00000353917.9_1_20:43929601-43932870:-|nuORF 14.838274106304384 0.23215694253501695 2 {[SA]|[TG]}N{I|L} 4 -1 26.682 0 0 2.5895 0 0 0 642.2059073997793 642.2059073997793 -1.588709367037282 0 -1.588709367037282 0 0 1.3494850021680094 0 0 0 {[SA]|[TG]}N{I|L} 2.5895 - 197 + NaN NaN 136132.2 NaN 5524 2427 7951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7954 42.612 NaN 66581 35 0 13106 0.261 + 15435 LPDKWQHDL 9 33 576.2961836236732 1150.5778143141463 2 576.2960815429688 MULTI HCD FTMS 0 0 0 7951 29209.306640625 0.4931072250902322 2 -0.052738189697265625 3 Unmodified _LPDKWQHDL_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 28.233623360808718 0.11935903763491834 2 {I|L}PDK 4 5 39.469 0 0 3.4304 0 0 0 694.2912081354124 694.2912081354124 23.499934467764874 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 + {I|L}PDK 3.4304 + + 17 + NaN NaN 92969.7 NaN 5525 2427 7951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7955 42.615 NaN 174180 35 0 16989 0.261 -1 ACHPCSPMC 9 44 531.6846943161834 1061.3548356991666 2 531.684814453125 MULTI HCD FTMS 0 0 0 7951 31873.22265625 0.5043310920458658 -7 0.18469619750976562 4 2 Carbamidomethyl (C) _AC(Carbamidomethyl (C))HPC(Carbamidomethyl (C))SPMC_ ENSG00000141736|ENST00000269571|ERBB2;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-4|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2 0.6014990680409731 0.3464572424761564 2 Q 1 -1 6.9897 0 0 0.65856 0 0 358.97197544701663 571.3007296197874 930.2727050668041 0 0 0 0 0 0 0 0 0 Q 0.65856 - 7 + NaN NaN 136188.8 NaN 5526 2427 7951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7956 42.618 NaN 37595 35 0 9408 0.261 -1 RYKLYQEMF 9 18 647.3185878444 1292.6226227555999 2 647.3176879882812 MULTI HCD FTMS 0 0 0 7951 17779.337890625 0.12882109399437813 9 -0.2336883544921875 5 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106296.8 NaN 5527 2427 7951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7957 42.622 NaN 43690 35 0 13495 0.261 + 26283 SRGSRYREF 9 17 579.2928147730981 NaN 0 579.29296875 PEAK HCD FTMS 0 0 0 7951 26804.86328125 0.681724479411102 13 -0.3357048034667969 6 Unmodified _SRGSRYREF_ REV__ENSG00000175662|ENST00000379504|TOM1L2;REV__nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;REV__nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;REV__nc|ENSG00000175662|Q6ZVM7-4|TOM1L2;REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95475.5 NaN 5528 2427 7951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7959 42.627 NaN 1311900 35 0 344330 0.327 + 30612 VPCKVEPGL 9 68 471.2599702188261 940.5053875044522 2 471.25970458984375 MULTI HCD FTMS 0 0 0 7958 503879.78125 0.6534589429125301 6 -0.15468215942382812 1 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 63.960520009940105 0.0120409805053046 2 VPCKVEGP{I|L} 9 2 + 61.424 0 0 6.531 6.531 85.327 0 0 0 19.128510625153638 1.1304605980539506 1.1304605980539506 1.1304605980539506 0 1.8882104921644451 1.3979400086720375 0.3807196863200844 0 VPCKVEGP{I|L};VPCKVEPG{I|L};[VP]CKEVPAV;[VP]CKVEPAV;[VP]CKEVPG{I|L};[VP]CKVEPG{I|L};VPCAA[{I|L}T]GP{I|L};VPCAA[{I|L}T]PG{I|L};VP[MN][{I|L}T]GP{I|L};VP[MN][{I|L}T]PG{I|L} 6.531;6.4108;4.6557;4.6272;4.4971;4.4686;4.1726;4.0524;3.7981;3.6779 -;+;-;-;-;+;-;-;-;- + 267 + NaN NaN 289665 NaN 5529 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7960 42.631 NaN 832520 35 0 316900 0.261 + 8569 HATVATENEVF 11 51 609.2935244021571 1216.5724958711141 2 609.2937622070312 MULTI HCD FTMS 0 0 0 7958 395789.6875 0.45056383134949546 -3 0.07915115356445312 2 Unmodified _HATVATENEVF_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 46.4752305370441 0.09589240899297388 2 VATENEV{M(Oxidation (M))|F} 8 3 81.535 0 0 6.702 0 0 309.1418629376969 0 309.1418629376969 0 77.55571607740464 0 0 0 2.274227503252014 0 0.4247425010840047 0.3054621874040891 + VATENEV{M(Oxidation (M))|F} 6.702 + + 421 NaN NaN 213467.4 NaN 5530 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7961 42.635 NaN 412090 35 0 34247 0.264 + 12329 KMPKFKMPSF 10 80 419.5558466311776 1255.6457104937328 3 419.55572509765625 MULTI HCD FTMS 0 0 0 7958 178047.921875 0.6416962237511465 10 -0.2533721923828125 3 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 43.476825903602695 0.11523527286127076 2 KMPK{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PS{M(Oxidation (M))|F} 10 0 + 53.082 0 0 4.2275 4.2275 87.997 0 0 0 14.968144493703463 14.968144493703463 14.968144493703463 14.968144493703463 0 1.642642683904553 0 0 0 + + KMPK{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PKY[PS]MK{M(Oxidation (M))|F};[KP]MKY[PS]MK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[Q{I|L}][PS]MK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}KP[Q{I|L}] 4.2275;3.0354;2.532;1.2756;0.70623 +;-;-;-;- + 278 + NaN NaN 148354.9 NaN 5531 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7962 42.638 NaN 220630 35 0 28591 0.261 + 25084 SADMSHVAL 9 53 465.7211486873815 929.427744441563 2 465.7208557128906 MULTI HCD FTMS 0 0 0 7958 120134.8828125 0.8669701075527316 -1 0.023021697998046875 4 Unmodified _SADMSHVAL_ ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 41.8396318013385 0.056899836730939755 2 {[SA]|[TG]}DM[HS]VA{I|L} 9 0 + 53.031 0 0 5.7057 5.7057 91.977 0 0 0 16.88424994129406 39.75949072601743 16.88424994129406 33.36046471314023 0 1.6989700043360187 1.3979400086720375 0 0 + + {[SA]|[TG]}DM[HS]VA{I|L};{[SA]|[TG]}D[H{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}A{I|L};{[SA]|[TG]}[YG][WY]A{I|L} 5.7057;2.1164;2.0019 +;-;- + 39 NaN NaN 118612.3 NaN 5532 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7963 42.641 NaN 267200 35 0 27380 0.261 + 19344 NPDEFYYKM 9 57 611.7579844330272 1221.5014159328543 2 611.7577514648438 MULTI HCD FTMS 0 0 0 7958 80657.2578125 0.8472172289859887 1 -0.02971649169921875 5 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 47.7319792270244 0.034743597693959835 2 NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 0 + 59.479 0 0 4.8694 4.8694 91.548 0 0 0 40.80706579873059 4.9852871524492315 4.9852871524492315 59.479203490014996 0 1.3098943791441968 0 0.3807196863200844 0 + + NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 4.8694 + + 93 + NaN NaN 140051.3 NaN 5533 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7964 42.645 NaN 117630 35 0 17032 0.261 + 35560 YYHARVYEF 9 42 624.2959494694181 1246.5773460056362 2 624.2962036132812 MULTI HCD FTMS 0 0 0 7958 45524.52734375 0.6773165076458102 -1 0.023021697998046875 6 Unmodified _YYHARVYEF_ ENSG00000108344|ENST00000264639|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3 19.625955294349634 0.19079243933902879 2 YYHA 4 5 41.198 0 0 3.3049 0 0 0 709.3295382135374 709.3295382135374 15 0 0 0 0 0.5 2 0 0 + YYHA 3.3049 + + 26 + NaN NaN 112578.5 NaN 5534 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7965 42.648 NaN 63386 35 0 5064.7 0.263 + 2435 DPTDVAALR 9 38 479.2539749631422 956.4933969930844 2 479.2529602050781 MULTI HCD FTMS 0 0 0 7958 23188.681640625 0.5258655810434409 6 -0.15468215942382812 7 Unmodified _DPTDVAALR_ ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20 13.042465956692817 0.2476723265019929 2 T{[HG]|PP} 3 8 13.684 0 0 1.4307 0 0 643.364549705275 0 643.364549705275 0 8.19984993812689 0 0 0 0.4247425010840047 0 0.5 0 T{[HG]|PP} 1.4307 - 9 NaN NaN 100779.9 NaN 5535 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7966 42.651 NaN 83319 35 0 6641.9 0.261 + 14379 LEETKMTT 8 49 476.7362921104965 951.458031287793 2 476.69171142578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LEETKMTT_ REV__ENSG00000182771|ENST00000327946|GRID1;REV__GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant 10.823927491677226 0.514154816617796 2 QNET 4 -1 35.662 0 0 3.7481 0 0 0 476.2251375787719 476.2251375787719 26.70941280735775 0 0 0 0 0 0 0.7614393726401688 0 QNET 3.7481 - 37 + NaN NaN 103620 NaN 5536 2428 7958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7968 42.656 NaN 308930 35 0 49268 0.327 + 632 APHEDTLSL 9 57 491.7456649069769 981.4767768807538 2 491.7454833984375 MULTI HCD FTMS 0 0 0 7967 204711.03125 0.739852313088482 1 -0.01967620849609375 1 Unmodified _APHEDTLSL_ ENSG00000137857|ENST00000389037|DUOX1;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2 54.773552608820026 0.024892918755467567 2 T{I|L}S{I|L} 4 5 47.933 0 0 4.8838 0 0 549.218553611525 0 549.218553611525 0 34.438200260161125 0 0 0 0.75 0 0.8494850021680094 0 + T{I|L}S{I|L} 4.8838 + + 48 NaN NaN 150179.7 NaN 5537 2429 7967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7969 42.661 NaN 350080 35 0 35225 0.261 + 5679 FPAEAGRDTL 10 52 538.7721485971304 1075.5297442610606 2 538.7720336914062 MULTI HCD FTMS 0 0 0 7967 89693.8515625 0.7164373792579607 -2 0.052738189697265625 2 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 37.771325159832564 0.16474695691370878 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AEA{[NV]|[RG]}DT{I|L} 10 0 + 57.33 0 0 5.3304 5.3304 86.061 0 0 0 5.321290465856308 50.8759123398972 5.321290465856308 7.95880017344075 0 1.9247425010840047 2 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AEA{[NV]|[RG]}DT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AEA{[NV]|[RG]}{[TV]|[{I|L}S]}E;[PA]{M(Oxidation (M))|F}EA{[NV]|[RG]}DT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]G{[NV]|[RG]}DT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV][RN]DT{I|L};[PA]E{M(Oxidation (M))|F}A{[NV]|[RG]}DT{I|L};[PA]{M(Oxidation (M))|F}EA{[NV]|[RG]}{[TV]|[{I|L}S]}E;[PA]E{M(Oxidation (M))|F}A{[NV]|[RG]}{[TV]|[{I|L}S]}E 5.3304;4.5904;3.0059;2.9371;2.5847;2.4788;2.2659;1.7388 +;-;-;-;-;-;-;- + 128 NaN NaN 135307.9 NaN 5538 2429 7967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7970 42.664 NaN 82149 35 0 18407 0.261 -1 MKPALFSVLC 10 35 562.7959528931079 1123.5773528530158 2 562.8138427734375 MULTI HCD FTMS 0 0 0 7967 4071.579345703125 0.30531597474457517 -3 0.07913970947265625 3 Oxidation (M) _M(Oxidation (M))KPALFSVLC_ ENSG00000105717|ENST00000251203|PBX4;ENSG00000167081|ENST00000373489|PBX3;ENSG00000204304|ENST00000375050|PBX2;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENST00000497091.1_1_9:128509732-128559720:+|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3 4.897010918128616 0.4493830473644964 2 SS{I|L} 3 -1 10.802 0 0 0.96139 0 0 234.10892131180327 599.2951143854124 833.4040356972157 0 0 0 0 0 0 0 0 0 SS{I|L} 0.96139 - 9 + NaN NaN 95723 NaN 5539 2429 7967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7971 42.668 NaN 100520 35 0 6227.9 0.261 + 30537 VMSQALKATF 10 51 556.2943839406294 1110.5742149480586 2 556.2944946289062 MULTI HCD FTMS 0 0 0 7967 50226.95703125 0.16852628239655756 -8 0.21099853515625 4 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 55.23464941255904 0.058752269732683056 2 [{M(Oxidation (M))|F}V]S[QA]{I|L}KAT{M(Oxidation (M))|F} 10 0 + 55.979 0 0 5.0405 5.0405 90.325 0 0 0 5.764837301042718 51.374722956624694 5.764837301042718 25.255762612236907 0 1.774227503252014 0 0.7302046884880937 0 + + [{M(Oxidation (M))|F}V]S[QA]{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[QA]{I|L}[TA]K{M(Oxidation (M))|F} 5.0405;2.7664 +;- + 137 NaN NaN 97345.2 NaN 5540 2429 7967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7972 42.671 NaN 32100 35 0 3211.6 0.261 + 26920 SYLDVKGNHF 10 30 590.2933603679247 1178.5721678026493 2 590.2933349609375 MULTI HCD FTMS 0 0 0 7967 13717.431640625 0.803083593097071 1 -0.01967620849609375 5 Unmodified _SYLDVKGNHF_ ENSG00000171488|ENST00000370454|LRRC8C 2.735195868890462 0.4608258780945842 2 D{I|L}[MT] 4 9 14.693 0 0 1.2467 0 0 700.3641834943375 0 700.3641834943375 0 13.433677739595034 0 0 0 0 0 0 0 D{I|L}[MT] 1.2467 - 6 NaN NaN 86471.5 NaN 5541 2429 7967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7974 42.676 NaN 1084500 35 0 122950 0.327 + 25192 SANLEEVTM 9 72 505.229047713681 1008.443542494162 2 505.22900390625 MULTI HCD FTMS 0 0 0 7973 540774.75 0.8764092607463602 2 -0.06259918212890625 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 165.7202790778711 6.154960448002056E-09 2 {[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F} 9 0 + 98.536 0 0 9.7711 9.7711 97.016 0 0 0 21.347659602351143 16.478174818886373 16.478174818886373 21.347659602351143 0 2.6237125054200234 0 1.7174165578762484 1.4489700043360187 + + {[SA]|[TG]}N{I|L}EEVT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[SA]|[TG]}EEVT{M(Oxidation (M))|F};{[SA]|[TG]}GG{I|L}EEVT{M(Oxidation (M))|F};[PS][KS]DEVT{M(Oxidation (M))|F};{[SA]|[TG]}[Q{I|L}]DEVT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]DEVT{M(Oxidation (M))|F};[NS]A{I|L}EEVT{M(Oxidation (M))|F};[PS][PS]T{[CA]|SS}VT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}[KQ]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VEE{[QV]|[N{I|L}]|[RA]|[KV]}{[SA]|[TG]} 9.7711;7.6542;7.4211;7.1357;7.0876;6.4879;6.0599;3.9225;2.631;0.04479 +;-;-;-;-;-;-;-;-;- + 708 NaN NaN 243376.8 NaN 5542 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7975 42.68 NaN 187790 35 0 27736 0.261 + 5058 FDSDVGVYR 9 45 529.2511549392353 1056.4877569452706 2 529.2511596679688 MULTI HCD FTMS 0 0 0 7973 81914.8203125 0.1149585083113191 9 -0.22699356079101562 2 Unmodified _FDSDVGVYR_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF 75.76082778847304 0.0072241045649327805 2 {[{M(Oxidation (M))|F}D]|MM}SDVGV[YR] 9 0 + 53.623 0 0 5.0756 5.0756 84.095 0 0 0 3.8784939400354546 3.8784939400354546 3.8784939400354546 3.8784939400354546 0 2.305462187404089 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}D]|MM}SDVGV[YR];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DDVGV[YR] 5.0756;4.7085 +;- + 99 + NaN NaN 119760.5 NaN 5543 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7976 42.684 NaN 89589 35 0 9095.1 0.261 -1 HYMSINDSF 9 40 565.2347345190159 1128.4549161048317 2 565.2343139648438 MULTI HCD FTMS 0 0 0 7973 41218.578125 0.6825841221163094 4 -0.10528945922851562 3 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 15.248480904072842 0.22861284681709862 2 TNDS{M(Oxidation (M))|F} 5 -1 47.959 0 0 4.25 0 0 546.2150746076187 0 546.2150746076187 0 47.95880017344075 0 0 0 1 0 0 0 TNDS{M(Oxidation (M))|F} 4.25 - 24 NaN NaN 113752.3 NaN 5544 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7977 42.687 NaN 270620 35 0 16615 0.261 + 13219 KYLYVDKNF 9 59 595.3165143186449 1188.6184757040896 2 595.3168334960938 MULTI HCD FTMS 0 0 0 7973 82592.8359375 0.3857330534268813 -3 0.07241439819335938 4 Unmodified _KYLYVDKNF_ ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant 97.74103586103693 0.004323122048066454 2 KY{I|L}YVDKN{M(Oxidation (M))|F} 9 0 + 91.027 0 0 7.6583 7.6583 93.219 0 0 0 13.001896823007826 13.001896823007826 13.001896823007826 13.001896823007826 0 3.024227503252014 0 0 1.872363747448347 + + KY{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKGG{M(Oxidation (M))|F};KY{I|L}YV[{M(Oxidation (M))|F}T]QQ;KY[KC]V[RH]QQ 7.6583;6.5644;5.7897;4.4352;3.052 +;+;-;-;- + 237 + NaN NaN 139277.3 NaN 5545 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7978 42.691 NaN 64549 35 0 8512 0.262 + 1987 DASAEVERL 9 37 495.2485746062613 988.4825962793226 2 495.2483215332031 MULTI HCD FTMS 0 0 0 7973 15551.5576171875 0.06918069522971397 9 -0.22699356079101562 5 Unmodified _DASAEVERL_ ENSG00000130303|ENST00000252593|BST2;nc|ENSG00000130303|Q10589-2|BST2 13.614867670302875 0.2427269026982664 2 WSAE 4 6 34.68 0 0 3.5085 0 0 0 512.2839449518186 512.2839449518186 23.689551135588452 0 0 0 0 0.4247425010840047 0 0 0 WSAE 3.5085 - 15 + NaN NaN 86858.7 NaN 5546 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7979 42.694 NaN 226240 35 0 17330 0.261 + 9446 HPVQIQTQL 9 58 532.298330752848 1062.5821085724958 2 532.2989501953125 MULTI HCD FTMS 0 0 0 7973 58019.5625 1 0 0 6 Unmodified _HPVQIQTQL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 28.494509381512117 0.11816142465008336 2 QQ{I|L}TTQ{I|L} 7 4 54.545 0 0 5.1332 0 0 232.14241225410314 0 232.14241225410314 0 47.555263781541086 0 0 0 0.8494850021680094 0 1 0 QQ{I|L}TTQ{I|L} 5.1332 - 285 NaN NaN 112723.5 NaN 5547 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7980 42.697 NaN 97637 35 0 6870.9 0.261 -1 RMFSDPSSF 9 39 545.2365920911333 1088.4586312490665 2 545.236083984375 MULTI HCD FTMS 0 0 0 7973 22376.302734375 0.5981775339353049 2 -0.06259918212890625 7 Oxidation (M) _RM(Oxidation (M))FSDPSSF_ ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668 17.11289562659939 0.2125047172822487 2 {I|L}{M(Oxidation (M))|F}S[PS]S{M(Oxidation (M))|F} 7 -1 42.963 0 0 3.9472 0 0 305.0777851570727 0 305.0777851570727 0 23.755244784138227 0 0 0 1.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}S[PS]S{M(Oxidation (M))|F} 3.9472 - 82 + NaN NaN 105639.3 NaN 5548 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7981 42.701 NaN 55016 35 0 6265.1 0.261 -1 KITQPHCEASG 11 34 614.2930173341368 NaN 0 614.2792358398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _KITQPHC(Carbamidomethyl (C))EASG_ ENST00000471619.5_1_2:210526230-210526296:+|nuORF 1.0714618166137932 0.3390807148598227 2 Y 1 -1 5.4846 0 0 0.44714 0 0 132.11551356317892 928.3604286998748 1060.4759422630536 0 0 0 0 0 0 0 0 0 Y 0.44714 - 1 + NaN NaN 98096.8 NaN 5549 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7982 42.704 NaN 39482 35 0 3692.8 0.261 + 26921 SYLDVKGNHF 10 35 590.2933603679247 1178.5721678026493 2 590.2931518554688 MULTI HCD FTMS 0 0 0 7973 15838.328125 0.9272509455491525 2 -0.06259918212890625 9 Unmodified _SYLDVKGNHF_ ENSG00000171488|ENST00000370454|LRRC8C 15.248480904072842 0.3684828712757339 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVK[HN]{[CT]|[{M(Oxidation (M))|F}G]} 10 2 + 25.379 0 0 2.1534 2.1534 87.755 0 0 0 17.420299789533402 4.259687322722812 4.259687322722812 25.379099962974152 0 0.3494850021680094 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVK[HN]{[CT]|[{M(Oxidation (M))|F}G]} 2.1534 - 21 + NaN NaN 95155.1 NaN 5550 2430 7973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7984 42.709 NaN 891050 35 0 291050 0.327 + 35558 YYHARVYEF 9 62 416.53304981949 1246.57732005867 3 416.53289794921875 MULTI HCD FTMS 0 0 0 7983 275085.1875 0.7615725999053347 1 -0.029632568359375 1 Unmodified _YYHARVYEF_ ENSG00000108344|ENST00000264639|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3 10.799506525563784 0.2670509983294061 2 YE{M(Oxidation (M))|F} 3 6 29.693 0 0 2.3819 0 0 789.3922596662125 0 789.3922596662125 0 23.239087409443187 0 0 0 0.5 0 0 0 + YE{M(Oxidation (M))|F} 2.3819 + + 56 NaN NaN 219165.9 NaN 5551 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7985 42.713 NaN 299940 35 0 52342 0.261 + 14651 LGHEEDYAL 9 64 523.7431955872148 1045.4718382412295 2 523.742919921875 MULTI HCD FTMS 0 0 0 7983 205235.84375 0.4593611180647197 4 -0.10860824584960938 2 Unmodified _LGHEEDYAL_ ENSG00000100077|ENST00000324198|GRK3;ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF 36.04419817259434 0.08350412372117409 2 DYA{I|L} 4 5 49.553 0 0 4.7397 0 0 565.2485829084 0 565.2485829084 0 28.610469015915783 0 0 0 1 0 0.7614393726401688 0 + DYA{I|L} 4.7397 + + 121 NaN NaN 126823.3 NaN 5552 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7986 42.717 NaN 120150 35 0 8793.1 0.261 + -1 HDVHTSIFLCF 11 56 459.22114642228803 1374.641609867064 3 459.2213439941406 MULTI HCD FTMS 0 0 0 7983 52386.3515625 1 0 0 3 Carbamidomethyl (C) _HDVHTSIFLC(Carbamidomethyl (C))F_ REV__ENST00000533839.5_1_11:126138992-126145725:+|nuORF;REV__ENST00000534315.5_1_11:126145303-126145728:+|nuORF 7.0370850670814 0.388058401935362 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.5997 0 0 1209.5626741754609 0 1209.5626741754609 0 18.010299956639813 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.5997 + + 15 + NaN NaN 98222.8 NaN 5553 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7987 42.72 NaN 97099 35 0 11758 0.261 + 31174 VVDPNDPQM 9 44 507.730715297522 1013.446877661844 2 507.7303771972656 MULTI HCD FTMS 0 0 0 7983 22170.4765625 0.3618650974145416 4 -0.10860824584960938 4 Unmodified _VVDPNDPQM_ ENSG00000151883|ENST00000281631|PARP8 8.155526934196011 0.2891920862272901 2 TM 2 8 20.969 0 0 2.0691 0 0 763.351366111525 0 763.351366111525 0 16.365006360318688 0 0 0 0 0 0 0 TM 2.0691 - 6 NaN NaN 96835.9 NaN 5554 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7988 42.724 NaN 101880 35 0 5776.2 0.261 + 3920 EPSEVFINR 9 45 545.7800915142793 1089.5456300953585 2 545.7801513671875 MULTI HCD FTMS 0 0 0 7983 7980.015625 0.051523013961284975 8 -0.19402694702148438 5 Unmodified _EPSEVFINR_ ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000121390|Q8WXF1-2|PSPC1 6.723162845929126 0.3000504726104499 2 V{M(Oxidation (M))|F}{I|L}[RN] 5 4 16.823 0 0 1.544 0 0 442.1675916205523 0 442.1675916205523 0 -2.8162060197715313 -2.8162060197715313 0 0 0 0 0 0 + V{M(Oxidation (M))|F}{I|L}[RN] 1.544 + + 61 + NaN NaN 98960.9 NaN 5555 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7989 42.727 NaN 69455 35 0 8053.8 0.261 -1 YPESESIMM 9 38 559.723010978105 1117.4314690230099 2 559.7214965820312 MULTI HCD FTMS 0 0 0 7983 34255.64453125 0.23837887863175672 22 -0.57952880859375 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 36.04419817259434 0.08350412372117409 2 {M(Oxidation (M))|F}{I|L}S[RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 45.846 0 0 4.1028 0 0 165.04663283515782 0 165.04663283515782 0 38.85615093082315 0 0 0 0.5 0 0.8494850021680094 0 {M(Oxidation (M))|F}{I|L}S[RH]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1028 - 58 NaN NaN 91580.1 NaN 5556 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7990 42.73 NaN 37624 35 0 7215.4 0.261 + 35420 YYEEQHPEL 9 17 604.2670384843465 1206.5195240354929 2 604.2669677734375 MULTI HCD FTMS 0 0 0 7983 23273.423828125 0.010865297520688648 74 -2.01556396484375 7 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 13.042465956692817 0.2476723265019929 2 YYE 3 6 39.265 0 0 3.2544 0 0 0 748.3239229791624 748.3239229791624 39.26477176880759 0 0 0 0 0.8807196863200843 2 0 0 + YYE 3.2544 + + 4 + NaN NaN 92977.8 NaN 5557 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7991 42.734 NaN 28068 35 0 4085.7 0.261 + -1 TYCVEYCFW 9 21 635.749359092494 NaN 0 635.749267578125 PEAK HCD FTMS 0 0 0 7983 26443.107421875 1 0 0 8 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))VEYCFW_ REV__ENST00000356079.8_1_2:204131259-204131349:+|nuORF 0.6014990680409731 0.29233206172879045 2 S 1 -1 1.5938 0 0 0.12555 0 0 665.751207343388 513.6729830377561 1179.4241903811442 0 0 0 0 0 0 0 0 0 S 0.12555 - 1 + NaN NaN 88823.4 NaN 5558 2431 7983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7993 42.739 NaN 1516000 35 0 362900 0.327 + 8995 HPEEGDLDL 9 70 512.732739014932 1023.450925096664 2 512.732666015625 MULTI HCD FTMS 0 0 0 7992 1136508.875 0.9138039909766078 -4 0.11199188232421875 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 123.45060196383646 0.0010021686353097689 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 84.223 0 0 8.2294 8.2294 96.109 0 0 0 4.137342758552691 26.377268672201453 4.137342758552691 31.070006276765483 0 2.504432191740108 0 1.5356668758921828 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEEPH{I|L};{NN|[MP]|[D{I|L}]|[EV]}D[HA][EP]D{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEE{I|L}PH;{NN|[MP]|[D{I|L}]|[EV]}DGEEP{I|L}H;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{[MG]|[TS]}[EP]D{I|L} 8.2294;5.1935;4.4548;3.8517;3.7194;3.5736;3.3588 +;-;-;-;-;-;- + 627 NaN NaN 311095.8 NaN 5559 2432 7992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7994 42.743 NaN 454550 35 0 49433 0.261 -1 0 88 556.2943839406294 1110.5742149480586 2 557.8163452148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 QQE{I|L}HA{I|L} 7 -1 52.216 0 0 4.7017 0 0 0 288.13462244205317 288.13462244205317 -4.318197312345987 0 -4.318197312345987 0 0 0 0 0.28872548999643577 0.4247425010840047 QQE{I|L}HA{I|L} 4.7017 - 2102 + NaN NaN 157564.8 NaN 5560 2432 7992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7995 42.747 NaN 111070 35 0 15288 0.262 -1 RYQQWMERF 9 45 453.88003143201183 1358.6182648962356 3 453.8803405761719 MULTI HCD FTMS 0 0 0 7992 55010.30859375 0.09398079707475519 46 -1.2182426452636719 3 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 16.565877749689598 0.21723083036893404 2 W 1 -1 15.485 0 0 1.1397 0 0 575.28248752951 594.2359606574855 1169.5184481869956 0 0 0 0 0 0.8494850021680094 0 0 0 W 1.1397 + + 21 + NaN NaN 119664.9 NaN 5561 2432 7992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7996 42.75 NaN 68924 35 0 13731 0.261 -1 RADQFEYVM 9 33 587.7635195260096 1173.5124861188192 2 587.7635498046875 MULTI HCD FTMS 0 0 0 7992 29646.228515625 0.05776187563055705 14 -0.3488960266113281 4 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 2 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3324452130875 0 746.3324452130875 0 36.197887582883936 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 17 NaN NaN 114151.3 NaN 5562 2432 7992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7997 42.753 NaN 143870 35 0 15066 0.262 -1 RYLSPKYIKMF 11 55 487.93560805191515 1460.7849947559455 3 487.9355163574219 MULTI HCD FTMS 0 0 0 7992 18477.44921875 0.045183779690718594 -29 0.764007568359375 5 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 3.3557259375316324 0.404203592500566 2 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F} 3 -1 12.051 0 0 0.82499 0 0 0 1092.6215480608862 1092.6215480608862 4.97302484056647 0 0 0 0 0 1.3010299956639813 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F} 0.82499 - 29 NaN NaN 116056.8 NaN 5563 2432 7992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 7998 42.757 NaN 58565 35 0 5827.9 0.261 + 1916 DAATFSSLR 9 43 484.24583982625654 966.4771267193131 2 484.2453308105469 MULTI HCD FTMS 0 0 0 7992 17960.89453125 1 0 0 6 Unmodified _DAATFSSLR_ BICD2-IPPK|1|fusion;ENSG00000151746|ENST00000652176|BICD1;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000151746|Q96G01-3|BICD1;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000185963|Q8TD16|BICD2 10.799506525563784 0.2670509983294061 2 WAT{[WT]|[RM]}[R{M(Oxidation (M))|F}] 7 6 + 33.288 0 0 3.4443 3.4443 88.949 0 0 0 28.683947707303616 1.5735442236229602 1.5735442236229602 33.28804147706549 0 0.7302046884880937 0 0 0 WAT{[WT]|[RM]}[R{M(Oxidation (M))|F}] 3.4443 - 17 + NaN NaN 112430.4 NaN 5564 2432 7992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8000 42.762 NaN 158540 35 0 18185 0.327 -1 CCYRCPMG 8 50 531.6846943161834 1061.3548356991666 2 531.6846923828125 MULTI HCD FTMS 0 0 0 7999 39554.5625 0.6258731950692706 -1 0.023021697998046875 1 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))YRCPM(Oxidation (M))G_ ENSG00000120949|ENST00000263932|TNFRSF8 0.7936320650641473 0.540814922690045 2 TQ 2 -1 5.9691 0 0 0.5624 0 0 257.92790806420413 571.2979830377561 829.2258911019603 0 0 0 0 0 0 0 0 0 TQ 0.5624 - 15 + NaN NaN 107880.6 NaN 5565 2433 7999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8001 42.766 NaN 104570 35 0 5643.2 0.261 -1 AYVHMVTHF 9 49 560.7655887837075 1119.5166246342148 2 560.7658081054688 MULTI HCD FTMS 0 0 0 7999 29765.54296875 0.7073310423294239 -14 0.3723945617675781 2 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 14.838274106304384 0.23215694253501695 2 [Q{I|L}][MN]YH[PA]{M(Oxidation (M))|F} 9 -1 + 17.113 0 0 1.5286 1.5286 82.628 0 0 0 0.9151498112134995 3.618187372417342 0.9151498112134995 6.9897000433601875 0 0 0 0 0 [Q{I|L}][MN]YH[PA]{M(Oxidation (M))|F};[Q{I|L}][MN]Y[PA]H{M(Oxidation (M))|F} 1.5286;0.90426 -;- 47 NaN NaN 104791.4 NaN 5566 2433 7999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8002 42.77 NaN 44891 35 0 4702 0.261 + 11926 KFIDTTSKF 9 34 543.7950986694144 1085.5756444056287 2 543.7949829101562 MULTI HCD FTMS 0 0 0 7999 21482.5 0.002574826686866556 132 -3.5347938537597656 3 Unmodified _KFIDTTSKF_ ENSG00000100316|ENST00000216146|RPL3;ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF 12.174745833636585 0.2551692358394414 2 K{M(Oxidation (M))|F}{I|L}D 4 5 38.928 0 0 3.5859 0 0 0 579.2780245416624 579.2780245416624 17.95880017344075 0 0 0 0 0.5 0 0.5 0 + K{M(Oxidation (M))|F}{I|L}D 3.5859 + + 7 + NaN NaN 96722.1 NaN 5567 2433 7999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8003 42.773 NaN 42755 35 0 7288.4 0.261 + -1 CVMHVRLEM 9 24 575.2661994295984 1148.5178459259967 2 575.7686157226562 MULTI HCD FTMS 0 0 0 7999 11017.3369140625 0.4896674095028634 1 -0.0196685791015625 4 2 Oxidation (M) _CVM(Oxidation (M))HVRLEM(Oxidation (M))_ REV__ZBTB48|p.S371C|1|0.22|ENSG00000204859|chr1:6586762-6586762|C/G|missense_variant 10.073929032068715 0.27331982688540024 2 {I|L}E{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.7164 0 0 741.341600486525 0 741.341600486525 0 24.20818753952375 0 0 0 0.5 0 0 0 {I|L}E{M(Oxidation (M))|F} 2.7164 + + 6 NaN NaN 110230.6 NaN 5568 2433 7999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8004 42.776 NaN 60745 35 0 5514.6 0.261 -1 FVRLCYEL 8 44 550.2850973149026 1098.555641696605 2 550.2853393554688 MULTI HCD FTMS 0 0 0 7999 21866.66796875 0.6203912991100753 3 -0.075653076171875 5 Carbamidomethyl (C) _FVRLC(Carbamidomethyl (C))YEL_ ENSG00000049883|ENST00000380639|PTCD2 4.3292370932331545 0.5355693454741696 2 EE{I|L} 3 -1 26.198 0 0 2.3848 0 0 709.3776112287125 0 709.3776112287125 0 26.197887582883936 0 0 0 0 0 0 0 EE{I|L} 2.3848 - 8 NaN NaN 90600.8 NaN 5569 2433 7999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8006 42.781 NaN 1140100 35 0 440750 0.327 + 8570 HATVATENEVF 11 47 609.2935244021571 1216.5724958711141 2 609.2935791015625 MULTI HCD FTMS 0 0 0 8005 635299.4375 0.7232198252112856 3 -0.0723724365234375 1 Unmodified _HATVATENEVF_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 70.49555756994154 0.01484552126421319 2 VATENEV{M(Oxidation (M))|F} 8 3 93.709 0 0 7.7027 0 0 309.1440602033219 0 309.1440602033219 0 83.25170683728075 0 0 0 3.0669015600442577 0 0.8494850021680094 0.3054621874040891 + VATENEV{M(Oxidation (M))|F} 7.7027 + + 310 NaN NaN 258144.5 NaN 5570 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8007 42.786 NaN 1322800 35 0 102920 0.262 -1 0 102 503.76406399053815 1005.5135750478763 2 503.7639465332031 MULTI HCD FTMS 0 0 0 8005 682374.6875 0.8449788859662626 -2 0.042690277099609375 2 NaN NaN 2 APEEH 5 -1 64.874 0 0 6.4518 0 0 0 439.25564673073603 439.25564673073603 36.418023705413546 0 0 0 0 1.7059771852360797 1.5228787452803376 1.0189301784845295 0 APEEH 6.4518 - 658 + NaN NaN 286472.9 NaN 5571 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8008 42.789 NaN 322990 35 0 30799 0.262 -1 KMPKFKMPSF 10 72 419.5558466311776 1255.6457104937328 3 419.5557556152344 MULTI HCD FTMS 0 0 0 8005 130068.125 0.46877393324191025 16 -0.4149131774902344 3 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 32.61649475675321 0.20947998662014555 2 KM[KP]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PS{M(Oxidation (M))|F} 10 -1 + 53.659 0 0 4.2734 4.2734 90.591 0 0 0 26.223637474483468 16.532125137753432 16.532125137753432 53.65865011156764 0 1.524227503252014 0 0 0 KM[KP]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PS{M(Oxidation (M))|F} 4.2734 + + 60 + NaN NaN 128153.1 NaN 5572 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8009 42.793 NaN 155870 35 0 13732 0.261 + 25201 SANLFYSDD 9 52 516.2200261496191 1030.4254993660381 2 516.2200317382812 MULTI HCD FTMS 0 0 0 8005 68340.40625 0.8455720277892459 -1 0.0196685791015625 4 Unmodified _SANLFYSDD_ ENSG00000104904|ENST00000602676|OAZ1;ENST00000592787.2_1_19:2271460-2271954:+|nuORF 16.149105407346934 0.22083165093524068 2 {[SA]|[TG]}N{I|L}W{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F} 8 4 + 32.872 0 0 3.1901 3.1901 86.458 0 0 0 1.1194126402513405 9.684334470932043 1.1194126402513405 12.514712847550765 0 1.8807196863200843 0 0 0.3252574989159953 {[SA]|[TG]}N{I|L}W{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F};{[SA]|[TG]}GG{I|L}W{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F};{[SA]|[TG]}{M(Oxidation (M))|F}[MT]{[QV]|[N{I|L}]|[RA]|[KV]}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[SA]|[TG]}W{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F} 3.1901;1.9756;1.8926;1.0611 -;-;-;- 139 NaN NaN 106365.4 NaN 5573 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8010 42.796 NaN 136340 35 0 21716 0.261 + 2742 DVYSDLNTQR 10 39 605.7887119090934 1209.5628708849868 2 605.7886962890625 MULTI HCD FTMS 0 0 0 8005 31121.72265625 0.2624510183137499 -3 0.07232284545898438 5 Unmodified _DVYSDLNTQR_ ENSG00000011600|ENST00000262629|TYROBP;ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-2|TYROBP;nc|ENSG00000011600|O43914-3|TYROBP 81.92315094803507 0.0034574604037367986 2 [DV]YSD{I|L}NT{[{M(Oxidation (M))|F}H]|[RQ]} 10 0 + 113.43 0 0 9.378 9.378 93.03 0 0 0 102.97479663303164 5.764837301042718 5.764837301042718 9.164539485499262 0 3.004432191740108 2 1.5138793319624577 0.7614393726401688 + + [DV]YSD{I|L}NT{[{M(Oxidation (M))|F}H]|[RQ]};[DV]YSD{I|L}GGT{[{M(Oxidation (M))|F}H]|[RQ]};[DV]YSD{I|L}NTA{[NV]|[RG]};[DV]YSD{I|L}GGTA{[NV]|[RG]};[VS]{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}NTA{[NV]|[RG]};[VS]{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}GGTA{[NV]|[RG]} 9.378;8.6203;7.1261;6.3714;3.8423;3.0876 +;-;-;-;-;- + 202 + NaN NaN 117803.5 NaN 5574 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8011 42.799 NaN 115330 35 0 22750 0.261 -1 NPDEFYYKM 9 32 611.7579844330272 1221.5014159328543 2 611.7584228515625 MULTI HCD FTMS 0 0 0 8005 15672.298828125 0.16462054308703095 7 -0.18105316162109375 6 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 8.155526934196011 0.2891920862272901 2 P{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.347 0 0 959.3769398419937 0 959.3769398419937 0 10.76728783671072 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 1.347 - 6 NaN NaN 96483.4 NaN 5575 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8012 42.803 NaN 87882 35 0 11222 0.261 + 4296 EVNQETIQRL 10 36 615.3281318408395 1228.641710748479 2 615.8290405273438 MULTI HCD FTMS 0 0 0 8005 18418.42578125 0.9017615853168169 -2 0.042690277099609375 7 Unmodified _EVNQETIQRL_ ENSG00000008324|ENST00000011691|SS18L2 18.3397198061782 0.3395684655748306 2 {NN|[MP]|[D{I|L}]|[EV]}NQET{I|L}QR{I|L} 10 0 {NN|[MP]|[D{I|L}]|[EV]} + + 35.61 1.338 0.58657 2.8984 2.8984 60.047 0 0 0 0 30.12578788640525 0 0 0 0.3494850021680094 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}NQET{I|L}QR{I|L} 2.8984 + + 70 + NaN NaN 97910.5 NaN 5576 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8013 42.806 NaN 57075 35 0 8279.2 0.261 + 9483 HPWEVMPEL 9 33 569.2734474624344 1136.5323419916688 2 569.7744750976562 MULTI HCD FTMS 0 0 0 8005 11943.7822265625 0.05958917432733171 44 -1.1755523681640625 8 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97029.3 NaN 5577 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8014 42.809 NaN 50382 35 0 5621.2 0.261 + -1 CVMHVRLEM 9 33 575.2661994295984 1148.5178459259967 2 575.2676391601562 MULTI HCD FTMS 0 0 0 8005 20735.8203125 0.768657245914078 -1 0.0196685791015625 9 2 Oxidation (M) _CVM(Oxidation (M))HVRLEM(Oxidation (M))_ REV__ZBTB48|p.S371C|1|0.22|ENSG00000204859|chr1:6586762-6586762|C/G|missense_variant 10.073929032068715 0.27331982688540024 2 Q{I|L}E{M(Oxidation (M))|F} 4 -1 33.175 0 0 2.8885 0 0 613.2872791974625 0 613.2872791974625 0 27.690775249321078 0 0 0 0.4247425010840047 0 0 0 Q{I|L}E{M(Oxidation (M))|F} 2.8885 - 22 NaN NaN 103271.3 NaN 5578 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8015 42.813 NaN 28062 35 0 4089 0.261 -1 LRYKEVCYY 9 26 647.3190365493526 NaN 0 647.3190307617188 PEAK HCD FTMS 0 0 0 8005 11255.251953125 0.8297642402132248 -2 0.042690277099609375 10 Carbamidomethyl (C) _LRYKEVC(Carbamidomethyl (C))YY_ ENSG00000134780|ENST00000257215|DAGLA 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91842.7 NaN 5579 2434 8005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8017 42.818 NaN 476290 35 0 40468 0.327 + 30538 VMSQALKATF 10 75 556.2943839406294 1110.5742149480586 2 556.2943725585938 MULTI HCD FTMS 0 0 0 8016 275646.59375 0.9248757728058123 -2 0.0559539794921875 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 142.91894589111453 3.7685580440470316E-07 2 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 102.41 0 0 9.221 9.221 92.897 0 0 0 6.164354512889844 82.99061158231729 6.164354512889844 9.164539485499262 0 3.6237125054200234 0 1.9793395554607172 0 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}TAK{M(Oxidation (M))|F};[TA]K[EC]{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}TAK{M(Oxidation (M))|F};[TA]KV[MD]KAT{M(Oxidation (M))|F};[TA]K[TP]{M(Oxidation (M))|F}KAT{M(Oxidation (M))|F};[TA]K[EC]{I|L}TAK{M(Oxidation (M))|F};[TA]KV[MD]TAK{M(Oxidation (M))|F};[TA]KV{[MS]|[{M(Oxidation (M))|F}A]}[VG]AT{M(Oxidation (M))|F} 9.221;8.3958;7.0946;6.5874;6.2694;5.815;5.2011;4.4611;3.6887;3.3244 +;-;-;-;-;-;-;-;-;- + 1308 NaN NaN 161590.3 NaN 5580 2435 8016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8018 42.822 NaN 355720 35 0 33204 0.261 + 5680 FPAEAGRDTL 10 52 538.7721485971304 1075.5297442610606 2 538.7720947265625 MULTI HCD FTMS 0 0 0 8016 87995.4921875 0.7028715871945512 4 -0.085418701171875 2 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 53.31671820480216 0.06572736166898346 2 {I|L}MAEA 5 7 77.792 0 0 7.2329 0 0 0 557.2682697162437 557.2682697162437 56.822581265925436 0 0 0 0 1.4361818737241734 2 1.1747425010840047 0 {I|L}MAEA 7.2329 - 207 + NaN NaN 136993.5 NaN 5581 2435 8016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8019 42.826 NaN 70846 35 0 6593.4 0.261 + 8540 HALPESESL 9 42 491.7456649069769 981.4767768807538 2 491.7454528808594 MULTI HCD FTMS 0 0 0 8016 28005.115234375 0.10121413173459273 7 -0.17113494873046875 3 Unmodified _HALPESESL_ ENSG00000165509|ENST00000298296|MAGEC3;nc|ENSG00000165509|Q8TD91-2|MAGEC3 11.640296217721598 0.25978676193971967 2 S{I|L} 2 7 25.217 0 0 2.5692 0 0 763.3481726684499 0 763.3481726684499 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 + S{I|L} 2.5692 + + 8 NaN NaN 92635.3 NaN 5582 2435 8016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8020 42.829 NaN 36328 35 0 6113.2 0.261 + 6512 FPISDDRNSSV 11 21 618.7967676691092 1235.5789824050182 2 618.7969360351562 MULTI HCD FTMS 0 0 0 8016 20451.8984375 0.6796966989632836 1 -0.0196990966796875 4 Unmodified _FPISDDRNSSV_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B 4.189502756095605 0.4005469306127019 2 S 1 10 6.9897 0 0 0.5657 0 0 357.20653252865924 788.3213595025999 1145.5278920312592 0 0 0 0 0 0 0 0 0 + S 0.5657 + + 2 + NaN NaN 103572.2 NaN 5583 2435 8016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8021 42.832 NaN 66759 35 0 10252 0.261 + 8036 GGNSSFLVKLD 11 36 568.8009370552801 1135.58732117736 2 568.800048828125 MULTI HCD FTMS 0 0 0 8016 3572.545166015625 0.02110963118670376 11 -0.26992034912109375 5 Unmodified _GGNSSFLVKLD_ REV__ENSG00000011304|ENST00000356948|PTBP1;REV__ENST00000586944.5_1_19:807712-810823:+|nuORF;REV__nc|ENSG00000011304|P26599-1|PTBP1;REV__nc|ENSG00000011304|P26599-2|PTBP1 4.897010918128616 0.3974440401582579 2 P 1 -1 6.9897 0 0 0.61551 0 0 136.10961229239757 899.4018648736936 1035.5114771660913 0 0 0 0 0 0 0 0 0 P 0.61551 - 3 + NaN NaN 103060.7 NaN 5584 2435 8016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8023 42.837 NaN 303460 35 0 21315 0.327 + 13220 KYLYVDKNF 9 61 595.3165143186449 1188.6184757040896 2 595.3162231445312 MULTI HCD FTMS 0 0 0 8022 128624.046875 0.6007124683642125 3 -0.0657196044921875 1 Unmodified _KYLYVDKNF_ ENSG00000100345|ENST00000216181|MYH9;MYH9-TXN2|1|fusion;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant 97.74103586103693 0.004323122048066454 2 KY{I|L}YVDKN{M(Oxidation (M))|F} 9 0 + 90.856 0 0 7.6438 7.6438 93.956 0 0 0 71.39206971459224 10.782184059010262 10.782184059010262 16.672064656532882 0 2.9291746928241125 0 0 1.8411290632962718 + + KY{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKN{M(Oxidation (M))|F};[YK]{I|L}YVDKGG{M(Oxidation (M))|F};KY{I|L}YV[{M(Oxidation (M))|F}T]QQ;KY[KC]V[RH]QQ 7.6438;6.2412;5.4665;4.4207;2.6736 +;+;-;-;- + 322 + NaN NaN 141841.7 NaN 5585 2436 8022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8024 42.842 NaN 521840 35 0 106000 0.264 + 35559 YYHARVYEF 9 66 416.53304981949 1246.57732005867 3 416.5329284667969 MULTI HCD FTMS 0 0 0 8022 130149.21875 0.3603177611992853 6 -0.15143585205078125 2 Unmodified _YYHARVYEF_ ENSG00000108344|ENST00000264639|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3 4.897010918128616 0.31389406404703984 2 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.764 0 0 1081.4983080731215 0 1081.4983080731215 0 16.505149978319906 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.764 + + 50 + NaN NaN 156663.1 NaN 5586 2436 8022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8025 42.845 NaN 196210 35 0 21716 0.261 + -1 MATDKILAP 9 51 488.26217434279397 974.509795752388 2 488.26116943359375 MULTI HCD FTMS 0 0 0 8022 31444.408203125 0.7597477017678941 1 -0.016387939453125 3 Oxidation (M) _M(Oxidation (M))ATDKILAP_ REV__ENSG00000119912|ENST00000265986|IDE;REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF;REV__ENST00000492362.1_1_10:94240585-94257457:-|nuORF;REV__ENST00000496903.5_1_10:94214203-94257457:-|nuORF 12.531546534597751 0.2520865569484384 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]A{M(Oxidation (M))|F} 6 -1 17.598 0 0 1.8058 0 0 0 216.08948260225046 216.08948260225046 8.133637307377061 0 0 0 0 0 1.6989700043360187 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RH]A{M(Oxidation (M))|F} 1.8058 - 41 NaN NaN 109099.7 NaN 5587 2436 8022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8026 42.849 NaN 21644 35 0 2565.6 0.261 + -1 FCFCFCLWS 9 23 635.2457885742188 NaN 0 635.2457885742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _FCFC(Carbamidomethyl (C))FC(Carbamidomethyl (C))LWS_ REV__ENST00000373115.4_1_10:73769153-73769792:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97169.1 NaN 5588 2436 8022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8028 42.854 NaN 274450 35 0 39474 0.327 + 3166 EAVKVEEEL 9 74 523.2742203123581 1044.5338876915162 2 523.2739868164062 MULTI HCD FTMS 0 0 0 8027 125552.625 0.4815496715364381 -3 0.0723724365234375 1 Unmodified _EAVKVEEEL_ ENSG00000137975|ENST00000370565|CLCA2 60.07390631473393 0.0174780869009295 2 KVE{M(Oxidation (M))|F}E{I|L} 6 4 40.64 0 0 3.8907 0 0 281.13694960761876 0 281.13694960761876 0 21.427127331550864 0 0 0 0.3807196863200844 0 1 0 KVE{M(Oxidation (M))|F}E{I|L} 3.8907 - 410 NaN NaN 122539.5 NaN 5589 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8029 42.858 NaN 171610 35 0 17246 0.261 + 30991 VSDKTVVK 8 59 438.2635523618724 874.5125517905449 2 438.263427734375 MULTI HCD FTMS 0 0 0 8027 55240.69921875 0.21538372568993644 34 -0.9184188842773438 2 Unmodified _VSDKTVVK_ REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1 0.6903765706972694 0.5409681170271811 2 {I|L} 1 -1 5.4846 0 0 0.62716 0 0 475.2939371438636 283.1173189752563 758.4112561191199 0 0 0 0 0 0 0 0 0 {I|L} 0.62716 - 15 + NaN NaN 111553.5 NaN 5590 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8030 42.862 NaN 90221 35 0 7287.8 0.261 -1 LPAPPTQNM 9 53 492.7448082981265 983.475063663053 2 492.7441711425781 MULTI HCD FTMS 0 0 0 8027 28564.69140625 0.7369183595996559 -2 0.0360870361328125 3 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ ENSG00000141380|ENST00000415083|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant 24.020572477871973 0.15282392193088168 2 N{M(Oxidation (M))|F} 2 -1 23.588 0 0 2.3985 0 0 704.3848744123062 0 704.3848744123062 0 11.141055156958311 0 0 0 0.7134679910804405 0 0 0 N{M(Oxidation (M))|F} 2.3985 + + 49 NaN NaN 97783.6 NaN 5591 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8031 42.865 NaN 38771 35 0 10099 0.261 + 14514 LFDESYSQCL 10 15 602.7616757651164 1203.5087985970326 2 602.76123046875 MULTI HCD FTMS 0 0 0 8027 23196.30859375 0.7731053937733969 -2 0.0360870361328125 4 Unmodified _LFDESYSQCL_ REV__UNC13C|p.S565L|1|0.1|ENSG00000137766|chr15:54014597-54014597|C/T|missense_variant 4.5288652416199255 0.4513317009562028 2 E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 4 -1 19.693 0 0 1.6363 0 0 699.2806874005875 0 699.2806874005875 0 19.69273760456403 0 0 0 0.5 0 0 0 E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 1.6363 - 2 NaN NaN 107674.4 NaN 5592 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8032 42.868 NaN 42408 35 0 5556 0.261 -1 YVRYMQAKG 9 31 566.2866582908754 NaN 0 566.2855834960938 PEAK HCD FTMS 0 0 0 8027 12559.90234375 0.6740952681450841 1 -0.026317596435546875 5 Oxidation (M) _YVRYM(Oxidation (M))QAKG_ ENSG00000143157|ENST00000367876|POGK 4.75600775471527 0.27219989241163056 2 M{I|L}R 3 -1 11.427 0 0 1.0107 0 0 132.1000285773925 595.2248018854124 727.3248304628048 0 0 0 0 0 0 0 0 0 M{I|L}R 1.0107 - 9 + NaN NaN 101450.8 NaN 5593 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8033 42.872 NaN 52509 35 0 5499.4 0.261 -1 KYIQEAEML 9 34 570.7840297513064 1139.5535065694128 2 570.7823486328125 MULTI HCD FTMS 0 0 0 8027 13485.9013671875 0.23274739471411748 -7 0.17766189575195312 6 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 15.248480904072842 0.22861284681709862 2 E{M(Oxidation (M))|F}{I|L} 3 -1 31.198 0 0 2.7377 0 0 732.3799915998062 0 732.3799915998062 0 21.90614065464281 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F}{I|L} 2.7377 + + 7 NaN NaN 89344.1 NaN 5594 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8034 42.875 NaN 41500 35 0 6614 0.261 + 25335 SDLEKHFTQ 9 36 552.7695674698707 1103.5245820065413 2 553.7716674804688 MULTI HCD FTMS 0 0 0 8027 13326.01953125 0.21825516960056832 -19 0.49738311767578125 7 Unmodified _SDLEKHFTQ_ ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2|RIPOR3 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82889.2 NaN 5595 2437 8027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8036 42.88 NaN 1446400 35 0 356780 0.327 + 8996 HPEEGDLDL 9 72 512.732739014932 1023.450925096664 2 512.7326049804688 MULTI HCD FTMS 0 0 0 8035 1133699.875 0.9115454292820031 2 -0.0593109130859375 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 123.45060196383646 0.0010021686353097689 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 86.794 0 0 8.4805 8.4805 96.687 0 0 0 4.137342758552691 36.988474775526186 4.137342758552691 34.080306233405295 0 2.504432191740108 0 1.4916440611282626 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEEPH{I|L};{NN|[MP]|[D{I|L}]|[EV]}DGEEP{I|L}H;{NN|[MP]|[D{I|L}]|[EV]}DGEE{I|L}PH;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEG{[TV]|[{I|L}S]}QQ;{NN|[MP]|[D{I|L}]|[EV]}{I|L}DD{[CP]|[EA]}PH;{NN|[MP]|[D{I|L}]|[EV]}D{NN|[MP]|[D{I|L}]|[EV]}{[CP]|[EA]}PH;{NN|[MP]|[D{I|L}]|[EV]}{I|L}DD{[MG]|[TS]}[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}D{NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[{M(Oxidation (M))|F}V] 8.4805;5.1505;3.9407;3.0595;2.9822;2.6802;1.5774;1.0458;0.79979;0.26819 +;-;-;-;-;-;-;-;-;- + 498 NaN NaN 313795.8 NaN 5596 2438 8035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8037 42.884 NaN 257980 35 0 25755 0.261 + 3506 EIAEAYLGK 9 59 497.26604345233324 992.5175339714665 2 497.25360107421875 MULTI HCD FTMS 0 0 0 8035 19425.765625 0.44657092877488785 1 -0.023014068603515625 2 Unmodified _EIAEAYLGK_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 9.38312468134398 0.279288223203164 2 HDG{I|L}{NN|[MP]|[D{I|L}]|[EV]} 6 8 21.872 0 0 2.2037 0 0 324.207549695879 0 324.207549695879 0 10.674100046527355 0 0 0 0 0 0.4247425010840047 0 HDG{I|L}{NN|[MP]|[D{I|L}]|[EV]} 2.2037 - 131 + NaN NaN 130101.5 NaN 5597 2438 8035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8038 42.888 NaN 142450 35 0 26832 0.261 + 11947 KFKEQIDR 8 43 532.298330752848 1062.5821085724958 2 532.7847290039062 MULTI HCD FTMS 0 0 0 8035 8247.109375 0.19455251842607504 8 -0.20751571655273438 3 Unmodified _KFKEQIDR_ REV__ENSG00000204970|ENST00000504120|PCDHA1;REV__nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;REV__nc|ENSG00000204970|Q9Y5I3-3|PCDHA1 5.230669730166228 0.5342319408533849 2 {I|L} 1 -1 5.4846 0 0 0.51615 0 0 308.18929958987707 638.2784517877561 946.4677513776332 0 0 0 0 0 0 0 0 0 {I|L} 0.51615 + + 2 + NaN NaN 107125.8 NaN 5598 2438 8035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8039 42.891 NaN 31403 35 0 4993.3 0.261 + 7982 GESSFTYRAY 10 22 590.7671363991724 1179.5197198651447 2 590.7672119140625 MULTI HCD FTMS 0 0 0 8035 19532.291015625 0.25168744923734715 -5 0.11835861206054688 4 Unmodified _GESSFTYRAY_ ENSG00000139218|ENST00000369367|SCAF11 10.799506525563784 0.4100970765206026 2 AY 2 8 24.776 0 0 2.1005 0 0 927.4087391584 0 927.4087391584 0 11.588709367037282 0 0 0 0.3807196863200844 0 0 0 + AY 2.1005 + + 11 NaN NaN 89011.4 NaN 5599 2438 8035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8040 42.895 NaN 34418 35 0 3938.3 0.261 -1 DTQHTMYFA 9 29 565.2347345190159 1128.4549161048317 2 565.2348022460938 MULTI HCD FTMS 0 0 0 8035 4808.2734375 0.07962552937362166 12 -0.31622314453125 5 Oxidation (M) _DTQHTM(Oxidation (M))YFA_ ENSG00000134698|ENST00000373210|AGO4 2.0597508629832335 0.3354026079994024 2 T 1 -1 1.5938 0 0 0.14124 0 0 481.1821632745567 543.1867769830686 1024.3689402576254 0 0 0 0 0 0 0 0 0 T 0.14124 + + 2 + NaN NaN 87612.7 NaN 5600 2438 8035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8041 42.898 NaN 32254 35 0 6213.6 0.261 -1 MWDSRSFMRWY 11 27 546.8985595703125 NaN 0 546.8985595703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))WDSRSFM(Oxidation (M))RWY_ ENST00000421138.6_1_12:21627778-21627829:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99477.8 NaN 5601 2438 8035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8043 42.903 NaN 411810 35 0 84870 0.327 + 30784 VPRQESLL 8 64 471.2744054227147 940.5342579122295 2 471.2597961425781 MULTI HCD FTMS 0 0 0 8042 21511.515625 0.9866172977126548 4 -0.11543655395507812 1 Unmodified _VPRQESLL_ REV__ENSG00000100314|ENST00000216144|CABP7 6.354104778181461 0.5325651638111438 2 PC 2 -1 8.5835 0 0 0.91262 0 0 99.09820594573746 638.3517550104124 737.4499609561499 0 0 0 0 0 0 0 0 0 PC 0.91262 - 48 + NaN NaN 161944.3 NaN 5602 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8044 42.907 NaN 173950 35 0 17839 0.261 + 14727 LHMIDLEIQ 9 58 556.2943839406294 1110.5742149480586 2 557.8162231445312 MULTI HCD FTMS 0 0 0 8042 4303.7080078125 0.27171755018500793 6 -0.15818405151367188 2 Unmodified _LHMIDLEIQ_ ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401-2|DENND4A;nc|ENSG00000174485|Q7Z401|DENND4A 10.073929032068715 0.27331982688540024 2 QQE{I|L}HA 6 8 43.889 0 0 3.9519 0 0 0 401.21738611392817 401.21738611392817 7.324389894093244 0 0 0 0 0 0 0 0.4247425010840047 QQE{I|L}HA 3.9519 - 296 + NaN NaN 109559.8 NaN 5603 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8045 42.911 NaN 457280 35 0 86551 0.264 + 24823 RYPSLWRRL 9 76 416.2436918347977 1245.7092461045931 3 416.24365234375 MULTI HCD FTMS 0 0 0 8042 78839.828125 0.057308600197680214 -22 0.5731010437011719 3 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 7.945399516374404 0.2907850085234385 2 {M(Oxidation (M))|F} 1 9 16.99 0 0 1.3639 0 0 1080.63031041299 0 1080.63031041299 0 2.2526405213950795 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3639 - 36 + NaN NaN 155704.8 NaN 5604 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8046 42.914 NaN 103280 35 0 18281 0.261 + 9706 HVVDGFRLS 9 37 515.2767694468283 1028.5389859604566 2 515.2766723632812 MULTI HCD FTMS 0 0 0 8042 39635.7734375 0.8709154426251994 1 -0.036296844482421875 4 Unmodified _HVVDGFRLS_ REV__ENSG00000104299|ENST00000521022|INTS9;REV__nc|ENSG00000104299|Q9NV88-2|INTS9;REV__nc|ENSG00000104299|Q9NV88-3|INTS9 3.2813086475875832 0.32614229037259 2 SV 2 -1 10.969 0 0 1.0665 0 0 149.10591116570214 690.3083186571936 839.4142298228958 0 0 0 0 0 0 0 0 0 SV 1.0665 - 12 + NaN NaN 92726 NaN 5605 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8047 42.918 NaN 83870 35 0 13461 0.261 -1 RYQQWMERF 9 32 453.88003143201183 1358.6182648962356 3 453.8798828125 MULTI HCD FTMS 0 0 0 8042 34655.1796875 0.05920565604989445 53 -1.4768295288085938 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 9.5439744041441 0.27789851728676895 2 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3218 0 0 1037.438865337445 0 1037.438865337445 0 8.226825097560422 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.3218 + + 13 + NaN NaN 97626 NaN 5606 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8048 42.921 NaN 51286 35 0 9078.6 0.261 -1 RADQFEYVM 9 32 587.7635195260096 1173.5124861188192 2 587.7642211914062 MULTI HCD FTMS 0 0 0 8042 15461.68359375 0.030125108302073128 21 -0.5729827880859375 6 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 2 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3356800763687 0 746.3356800763687 0 36.197887582883936 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 23 NaN NaN 92738.5 NaN 5607 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8049 42.924 NaN 110580 35 0 21095 0.261 + 21607 PYPCSDWSSI 10 39 577.7446742086304 1153.4747954840607 2 577.7443237304688 MULTI HCD FTMS 0 0 0 8042 13239.759765625 0.48654530901184695 1 -0.036296844482421875 7 Unmodified _PYPCSDWSSI_ REV__ENST00000341983.8_1_19:47725000-47735852:-|nuORF;REV__ENST00000598636.1_1_19:47725000-47730056:-|nuORF;REV__ENST00000601438.2_1_19:47725000-47725201:-|nuORF 3.5964929083625545 0.45626689593999237 2 [DC]STEV 6 -1 24.526 0 0 2.1262 0 0 0 516.2194307916624 516.2194307916624 24.52561882712928 0 0 0 0 0 0 0 0 [DC]STEV 2.1262 - 56 + NaN NaN 110410 NaN 5608 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8050 42.931 NaN 88070 35 0 6637.9 0.261 -1 AYVHMVTHF 9 53 560.7655887837075 1119.5166246342148 2 560.765625 MULTI HCD FTMS 0 0 0 8042 24652.123046875 0.5858187068412003 -8 0.19402694702148438 8 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 16.942295170755138 0.21397866736869717 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}C(Carbamidomethyl (C)){M(Oxidation (M))|F}[YR][Q{I|L}] 8 -1 + 12.866 0 0 1.1492 1.1492 86.027 0 0 0 1.8965122531768248 1.8965122531768248 1.8965122531768248 12.865612383257387 0 0.2742275032520141 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}C(Carbamidomethyl (C)){M(Oxidation (M))|F}[YR][Q{I|L}] 1.1492 - 23 NaN NaN 92646.8 NaN 5609 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8051 42.934 NaN 75704 35 0 7555.4 0.264 -1 CHMMPFYSY 9 49 404.1491367219186 NaN 0 404.149169921875 PEAK HCD FTMS 0 0 0 8042 3877.34423828125 0.28258605638980416 4 -0.11543655395507812 9 2 Oxidation (M) _CHM(Oxidation (M))M(Oxidation (M))PFYSY_ ENSG00000112893|ENST00000261483|MAN2A1;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-1|MAN2A2;nc|ENSG00000196547|P49641-2|MAN2A2 0.235843874597859 0.29410397576755687 2 PP 2 -1 7.4743 0 0 0.927 0 0 462.20869106903405 146.95363794498283 609.1623290140169 0 0 0 0 0 0 0 0 0 PP 0.927 - 6 + NaN NaN 100598.3 NaN 5610 2439 8042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8053 42.939 NaN 865470 35 0 77140 0.327 -1 0 78 503.76406399053815 1005.5135750478763 2 503.76385498046875 MULTI HCD FTMS 0 0 0 8052 383645.875 0.47506548821544914 4 -0.09887313842773438 1 NaN NaN 2 APEEH 5 -1 63.281 0 0 6.2934 0 0 0 439.2558806631015 439.2558806631015 25.27401396193156 0 0 0 0 1.610924374808178 1.2218487496163564 1.079689690656103 0 APEEH 6.2934 - 440 + NaN NaN 232650.2 NaN 5611 2440 8052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8054 42.944 NaN 233660 35 0 84022 0.261 + 8571 HATVATENEVF 11 31 609.2935244021571 1216.5724958711141 2 609.2935180664062 MULTI HCD FTMS 0 0 0 8052 116685.234375 0.1328335424654384 9 -0.22394561767578125 2 Unmodified _HATVATENEVF_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 35.079672537005266 0.16863851843823818 2 ATENEV{M(Oxidation (M))|F} 7 4 75.209 0 0 6.182 0 0 408.21177870918126 0 408.21177870918126 0 75.20889497925907 0 0 0 2.3494850021680094 0 0.4247425010840047 0 + ATENEV{M(Oxidation (M))|F} 6.182 + + 98 NaN NaN 126992 NaN 5612 2440 8052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8055 42.947 NaN 207020 35 0 21037 0.264 -1 KMPKFKMPSF 10 63 419.5558466311776 1255.6457104937328 3 419.5556640625 MULTI HCD FTMS 0 0 0 8052 119142.9453125 0.4293988791809403 22 -0.5925674438476562 3 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 18.3397198061782 0.3395684655748306 2 KM[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 10 -1 + 53.02 0 0 4.2225 4.2225 90.497 0 0 0 31.03031650958563 17.92719286378599 17.92719286378599 53.02001655294582 0 1.305462187404089 0 0 0 KM[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 4.2225 + + 36 + NaN NaN 115632.8 NaN 5613 2440 8052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8056 42.951 NaN 84013 35 0 10973 0.261 -1 KYIQEAEML 9 36 570.7840297513064 1139.5535065694128 2 570.7839965820312 MULTI HCD FTMS 0 0 0 8052 44755.20703125 0.7724109462760216 -4 0.10201644897460938 4 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 27.223235318498237 0.1251536255799991 2 QEAE{M(Oxidation (M))|F}{I|L} 6 -1 61.146 0 0 5.3658 0 0 404.2415943830094 0 404.2415943830094 0 57.1669877129645 0 0 0 2 0 0 0 QEAE{M(Oxidation (M))|F}{I|L} 5.3658 + + 37 NaN NaN 99010.7 NaN 5614 2440 8052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8057 42.954 NaN 75542 35 0 8858 0.261 + 5059 FDSDVGVYR 9 40 529.2511549392353 1056.4877569452706 2 529.2513427734375 MULTI HCD FTMS 0 0 0 8052 26211.39453125 0.036784830932628645 19 -0.520355224609375 5 Unmodified _FDSDVGVYR_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF 29.081581746732265 0.1154664336125038 2 {[{M(Oxidation (M))|F}D]|MM}{[DS]|[MA]|[CV]|TT}VGV[YR] 9 0 + 26.144 0 0 2.4746 2.4746 87.94 0 0 0 26.143937264016873 6.478174818886373 6.478174818886373 26.143937264016873 0 1 0 0 0 + + {[{M(Oxidation (M))|F}D]|MM}{[DS]|[MA]|[CV]|TT}VGV[YR] 2.4746 + + 32 + NaN NaN 91938.4 NaN 5615 2440 8052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8058 42.957 NaN 40272 35 0 5257.5 0.261 + 15227 LNYANVKHQI 10 30 600.3303215263323 1198.6460901194646 2 600.5413208007812 MULTI HCD FTMS 0 0 0 8052 10137.5146484375 0.011368091353836098 -9 0.23032379150390625 6 Unmodified _LNYANVKHQI_ REV__ENSG00000183091|ENST00000397345|NEB;REV__nc|ENSG00000183091|P20929-1|NEB;REV__nc|ENSG00000183091|P20929-3|NEB;REV__nc|ENSG00000183091|P20929-4|NEB;REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;REV__NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant 3.2813086475875832 0.45793521633868084 2 HQ{I|L} 3 -1 26.198 0 0 2.1856 0 0 802.4332142560562 0 802.4332142560562 0 24.604093769761874 0 0 0 0 0 0 0 HQ{I|L} 2.1856 + + 7 NaN NaN 89194.4 NaN 5616 2440 8052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8060 42.962 NaN 142900 35 0 13630 0.327 + 30539 VMSQALKATF 10 45 556.2943839406294 1110.5742149480586 2 556.2945556640625 MULTI HCD FTMS 0 0 0 8059 101533 0.3406732169723848 4 -0.09883499145507812 1 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 68.75988807550267 0.019054759910196034 2 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 [{M(Oxidation (M))|F}V] + + 61.38 5.2288 2.1246 5.5269 5.5269 63.109 0 0 0 0 55.895709633532746 0 0 0 2.492992819099939 0 1.086696871556164 0 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 5.5269 + + 188 + NaN NaN 108175.1 NaN 5617 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8061 42.967 NaN 281140 35 0 33051 0.261 + 5681 FPAEAGRDTL 10 57 538.7721485971304 1075.5297442610606 2 538.7720336914062 MULTI HCD FTMS 0 0 0 8059 76237.03125 0.6089498657898293 10 -0.26346588134765625 2 Unmodified _FPAEAGRDTL_ ENSG00000103194|ENST00000219473|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 22.65808497894818 0.29917593477267174 2 AEAPE 5 7 47.761 0 0 4.4407 0 0 560.290749320955 0 560.290749320955 0 43.78144697160131 0 0 0 1.1307196863200843 0 0 0 AEAPE 4.4407 - 48 NaN NaN 131592.9 NaN 5618 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8062 42.97 NaN 385140 35 0 65508 0.261 + 22407 QPTGEEPAL 9 59 471.2324193860101 940.4502858388203 2 471.2320556640625 MULTI HCD FTMS 0 0 0 8059 98864.171875 0.6371959782568304 -1 0.023052215576171875 3 Unmodified _QPTGEEPAL_ ENSG00000115289|ENST00000233630|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1 27.628801355627647 0.12213550946336599 2 EPA{I|L} 4 5 34.655 0 0 3.6849 0 0 512.222459861525 0 512.222459861525 0 25.190775249321078 0 0 0 0.8494850021680094 0 0.3252574989159953 0 + EPA{I|L} 3.6849 + + 26 NaN NaN 147686.4 NaN 5619 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8063 42.974 NaN 181230 35 0 17407 0.261 -1 LDYCHCLK 8 52 526.2375152095378 1050.4604774858756 2 526.7389526367188 MULTI HCD FTMS 0 0 0 8059 57266.45703125 0.5067430411123021 -11 0.2863426208496094 4 Carbamidomethyl (C) _LDYC(Carbamidomethyl (C))HCLK_ ENST00000522550.2_1_7:107789404-107789653:-|nuORF 12.531546534597751 0.5015908124873912 2 NPV{[{M(Oxidation (M))|F}C]|[YS]}VQ{M(Oxidation (M))|F} 8 -1 31.565 0 0 3.0048 0 0 98.03392068028741 0 98.03392068028741 0 15.991531334132887 0 0 0 0 0 0 0.7742275032520141 NPV{[{M(Oxidation (M))|F}C]|[YS]}VQ{M(Oxidation (M))|F} 3.0048 - 115 + NaN NaN 117671.5 NaN 5620 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8064 42.977 NaN 60025 35 0 9824.5 0.261 + 2743 DVYSDLNTQR 10 32 605.7887119090934 1209.5628708849868 2 605.7891235351562 MULTI HCD FTMS 0 0 0 8059 35673.97265625 0.3008403665293068 4 -0.09883499145507812 5 Unmodified _DVYSDLNTQR_ ENSG00000011600|ENST00000262629|TYROBP;ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-2|TYROBP;nc|ENSG00000011600|O43914-3|TYROBP 14.837902256254086 0.37232328541747955 2 [DV]YS{NN|[MP]|[D{I|L}]|[EV]}N 7 3 33.288 0 0 2.7521 0 0 0 400.19443689517817 400.19443689517817 22.830466571458743 0 0 0 0 0.8807196863200843 0 0.8494850021680094 0 + [DV]YS{NN|[MP]|[D{I|L}]|[EV]}N 2.7521 + + 9 + NaN NaN 96159 NaN 5621 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8065 42.98 NaN 143640 35 0 25951 0.261 + -1 MSSLHGTREE 10 37 581.762101582647 1161.509650232094 2 582.26416015625 MULTI HCD FTMS 0 0 0 8059 33488.10546875 0.33931443637925807 -5 0.12506866455078125 6 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 8.155526934196011 0.43213520406898465 2 RSVS{[ES]|[DT]|[{I|L}C]} 6 -1 41.031 0 0 3.5325 0 0 498.2250233380875 0 498.2250233380875 0 40.94212497064703 0 0 0 1.5 0 0 0 RSVS{[ES]|[DT]|[{I|L}C]} 3.5325 - 31 NaN NaN 107459.9 NaN 5622 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8066 42.984 NaN 47256 35 0 6200.8 0.262 -1 SAECPMRL 8 34 482.2230929207107 962.4316329082214 2 482.2239685058594 MULTI HCD FTMS 0 0 0 8059 11370.96484375 0.47312733071894064 -1 0.023052215576171875 7 Carbamidomethyl (C) _SAEC(Carbamidomethyl (C))PMRL_ ENSG00000109158|ENST00000264318|GABRA4 8.593279151180031 0.5292430274356741 2 R 1 -1 1.1092 0 0 0.11525 0 0 498.7302606931808 304.57016931705317 803.300430010234 0 0 0 0 0 0 0 0 0 R 0.11525 + + 1 + NaN NaN 90093.8 NaN 5623 2441 8059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8068 42.989 NaN 361370 35 0 52936 0.327 + 3167 EAVKVEEEL 9 64 523.2742203123581 1044.5338876915162 2 523.2739868164062 MULTI HCD FTMS 0 0 0 8067 204583.796875 0.7846690595822557 2 -0.0494537353515625 1 Unmodified _EAVKVEEEL_ ENSG00000137975|ENST00000370565|CLCA2 66.45667989310934 0.010234776021261575 2 KV{M(Oxidation (M))|F}EE{I|L} 6 4 45.455 0 0 4.3517 0 0 281.1372547834 0 281.1372547834 0 25.930314954627818 0 0 0 0.9247425010840047 0 1 0 KV{M(Oxidation (M))|F}EE{I|L} 4.3517 - 666 NaN NaN 153943.6 NaN 5624 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8069 42.993 NaN 274290 35 0 70126 0.261 + 33432 YGSRLDYFQ 9 55 574.7723339914191 1147.5301150496382 2 574.7720947265625 MULTI HCD FTMS 0 0 0 8067 115858.0625 0.4876826989264808 -5 0.13504791259765625 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 SV{M(Oxidation (M))|F}TSVS{[DS]|[MA]|[CV]|TT} 9 9 46.41 0 0 4.0443 0 0 220.08618819569773 0 220.08618819569773 0 29.855312426617576 0 0 0 0.5 0 2.110924374808178 0 SV{M(Oxidation (M))|F}TSVS{[DS]|[MA]|[CV]|TT} 4.0443 - 200 + NaN NaN 140171.9 NaN 5625 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8070 42.997 NaN 79449 35 0 6716.7 0.261 + 32952 YALCLHTY 8 52 492.2371894957061 NaN 0 492.2464904785156 PEAK HCD FTMS 0 0 0 8067 8645.11328125 0.737536620243534 -3 0.08571624755859375 3 Unmodified _YALCLHTY_ REV__ENSG00000170927|ENST00000371117|PKHD1;REV__nc|ENSG00000170927|P08F94-2|PKHD1 10.183394434864962 0.38822285293237185 2 AVT 3 -1 13.188 0 0 1.3423 0 0 163.04907273965597 545.2379854791624 708.2870582188184 0 0 0 0 0 0 0 0 0 AVT 1.3423 - 15 + NaN NaN 101646.4 NaN 5626 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8071 43 NaN 81309 35 0 11341 0.261 -1 FADRLYDSM 9 42 567.2502883310053 1132.4860237288106 2 567.2506103515625 MULTI HCD FTMS 0 0 0 8067 43437.46484375 0.9892509611621716 -2 0.049419403076171875 4 Oxidation (M) _FADRLYDSM(Oxidation (M))_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 28.494509381512117 0.11816142465008336 2 YDS{M(Oxidation (M))|F} 4 -1 47.779 0 0 4.219 0 0 602.3178851563481 0 602.3178851563481 0 26.81031895404267 0 0 0 1.9247425010840047 0 0.5 0 YDS{M(Oxidation (M))|F} 4.219 + + 21 + NaN NaN 113946.5 NaN 5627 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8072 43.003 NaN 204810 35 0 34907 0.261 + 24537 RYLEQLHQL 9 39 600.3303215263323 1198.6460901194646 2 600.3310546875 MULTI HCD FTMS 0 0 0 8067 64731.95703125 0.0725896658662056 -7 0.17113494873046875 5 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 34.93206674587334 0.08860942999206235 2 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L} 9 4 + 58.606 0 0 4.8893 4.8893 86.74 0 0 0 0.4698372174895127 47.36880000633434 0.4698372174895127 9.208187539523749 0 1.274227503252014 0 0 0.6989700043360187 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR][AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}H[AG]{I|L} 4.8893;4.1211;4.1211 -;-;- 88 NaN NaN 111846.1 NaN 5628 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8073 43.007 NaN 39222 35 0 6699.3 0.261 -1 0 26 543.6278864607941 3255.723659965164 6 543.7949829101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.21469 0 0 2298.245502806733 807.3891085260374 3105.6346113327704 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.21469 - 2 + NaN NaN 105848.3 NaN 5629 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8074 43.01 NaN 25626 35 0 3858.3 0.261 + 32427 WARNEGTLAEM 11 22 639.2987670898438 NaN 0 639.2987670898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _WARNEGTLAEM_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88242.3 NaN 5630 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8075 43.013 NaN 123700 35 0 18698 0.263 + 26493 SVDVEVRVP 9 50 500.27715292845664 998.5397529237133 2 500.27740478515625 MULTI HCD FTMS 0 0 0 8067 15722.1552734375 0.33670160695021106 -2 0.049419403076171875 8 Unmodified _SVDVEVRVP_ ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1 4.75600775471527 0.31496297302216103 2 [YT]V[QT]ASV 8 8 35.328 0 0 3.5379 0 0 0 146.08406527823675 146.08406527823675 24.87002527416834 0 0 0 0 0 1.5228787452803376 1 0 [YT]V[QT]ASV 3.5379 - 180 NaN NaN 111533.6 NaN 5631 2442 8067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8077 43.018 NaN 822050 35 0 196130 0.327 + 8997 HPEEGDLDL 9 68 512.732739014932 1023.450925096664 2 512.7326049804688 MULTI HCD FTMS 0 0 0 8076 602294.0625 0.48427137716281754 7 -0.17777252197265625 1 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 81.89019881105858 0.005240739447516426 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L} 9 0 + 70.856 0 0 6.9233 6.9233 93.104 0 0 0 4.137342758552691 34.424960877086136 4.137342758552691 21.197887582883936 0 2.2302046884880937 0 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EEGD{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE{[RE]|[WV]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}T]{[RE]|[WV]}D{I|L} 6.9233;4.8521;2.7128 +;-;- + 220 NaN NaN 209369.6 NaN 5632 2443 8076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8078 43.023 NaN 129220 35 0 20582 0.261 + 5821 FPDAREQEI 9 46 552.7695674698707 1103.5245820065413 2 552.7695922851562 MULTI HCD FTMS 0 0 0 8076 53958.76953125 0.22035847290515603 -15 0.39182281494140625 2 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 43.981846655682396 0.04706587046877104 2 ADPE 4 7 39.24 0 0 3.5559 0 0 673.33891493965 0 673.33891493965 0 11.294934551318079 0 0 0 0.8807196863200843 0 0 0 ADPE 3.5559 - 53 NaN NaN 120680.2 NaN 5633 2443 8076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8079 43.027 NaN 120610 35 0 18341 0.261 + 8900 HPDAVVETSSL 11 48 577.7882906843904 1153.5620284355807 2 577.7876586914062 MULTI HCD FTMS 0 0 0 8076 32096.49609375 0.9962999644243671 1 -0.019733428955078125 3 Unmodified _HPDAVVETSSL_ ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 10.799506525563784 0.36298595732910816 2 EV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QN 6 9 32.853 0 0 2.848 0 0 406.2086659162125 0 406.2086659162125 0 30.863650028014433 0 0 0 1.274227503252014 0 0 0.4247425010840047 EV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QN 2.848 - 40 NaN NaN 99564.5 NaN 5634 2443 8076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8080 43.03 NaN 64157 35 0 14932 0.261 + -1 MFCSRMEVI 9 28 602.7616757651164 1203.5087985970326 2 602.76123046875 MULTI HCD FTMS 0 0 0 8076 25188.763671875 0.839511553250197 4 -0.09212875366210938 4 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))FC(Carbamidomethyl (C))SRM(Oxidation (M))EVI_ REV__ENST00000590244.1_1_17:58543761-58603427:-|nuORF 2.9952420565917617 0.3283108881486655 2 EV{I|L} 3 -1 24.693 0 0 2.0517 0 0 844.30180556465 0 844.30180556465 0 24.69273760456403 0 0 0 0 0 0 0 EV{I|L} 2.0517 + + 3 NaN NaN 98224.4 NaN 5635 2443 8076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8081 43.033 NaN 104830 35 0 15241 0.261 -1 CLSYMALLR 9 45 563.7892980414551 NaN 0 563.7891235351562 PEAK HCD FTMS 0 0 0 8076 4379.2060546875 0.15688862181242094 -1 0.029720306396484375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSYMALLR_ ENSG00000100417|ENST00000216259|PMM1;ENST00000472620.5_1_22:41980283-41985061:-|nuORF;ENST00000478337.1_1_22:41980283-41980484:-|nuORF;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000485648.5_1_22:41980283-41985809:-|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 6.9897 0 0 0.621 0 0 725.2846069698259 284.17145715885005 1009.456064128676 0 0 0 0 0 0 0 0 0 {I|L} 0.621 + + 5 + NaN NaN 99318.2 NaN 5636 2443 8076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8083 43.038 NaN 313250 35 0 39272 0.327 + 30859 VQPHDLGEV 9 66 497.2537427918074 992.4929326504148 2 497.2536315917969 MULTI HCD FTMS 0 0 0 8082 166145.96875 0.7247817562356457 4 -0.09540939331054688 1 Unmodified _VQPHDLGEV_ ENST00000447985.1_1_21:30260216-30260456:-|nuORF 10.823927491677226 0.26684000660059787 2 NTPDG{I|L}{NN|[MP]|[D{I|L}]|[EV]} 8 5 27.612 0 0 2.7821 0 0 149.1060702427771 0 149.1060702427771 0 18.65987537940164 0 0 0 0.3935078169319297 0 0.4247425010840047 0.3054621874040891 NTPDG{I|L}{NN|[MP]|[D{I|L}]|[EV]} 2.7821 - 189 + NaN NaN 143953.8 NaN 5637 2444 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8084 43.043 NaN 81647 35 0 7225.9 0.261 + 7983 GESSFTYRAY 10 44 590.7671363991724 1179.5197198651447 2 590.766845703125 MULTI HCD FTMS 0 0 0 8082 63594.0390625 0.8194543827724492 1 -0.023014068603515625 2 Unmodified _GESSFTYRAY_ ENSG00000139218|ENST00000369367|SCAF11 42.312485326615175 0.12533928745458864 2 {[DA]|[EG]}SS{M(Oxidation (M))|F}TYRAY 10 0 + 76.631 0 0 6.4968 6.4968 94.568 0 0 0 73.33018177991335 7.269987279362624 7.269987279362624 76.63093786472515 0 1.5 0 0.3494850021680094 0 + + {[DA]|[EG]}SS{M(Oxidation (M))|F}TYRAY 6.4968 + + 90 + NaN NaN 101381.9 NaN 5638 2444 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8085 43.046 NaN 175180 35 0 20704 0.261 + 21749 QAENVDVKI 9 59 508.2744335532907 1014.5343141733814 2 508.27447509765625 MULTI HCD FTMS 0 0 0 8082 73031.796875 0.5836227857165823 -4 0.09887313842773438 3 Unmodified _QAENVDVKI_ PCDHGA10|p.L142V|1|0.28|ENSG00000253846|chr5:141413599-141413599|C/G|missense_variant 47.594388314883695 0.03493607795751234 2 [QA]{[QD]|[EN]|[WG]|[KD]|[RS]}VDVK{I|L} 9 0 + 39.243 0 0 3.8681 3.8681 87.389 0 0 0 26.935749724493128 5.073930987251394 5.073930987251394 13.915280875683756 0 1.2302046884880937 0 0.3807196863200844 0 + + [QA]{[QD]|[EN]|[WG]|[KD]|[RS]}VDVK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}N[RN]QK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}GG[RN]QK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}N[RN][AG]K{I|L} 3.8681;2.4965;1.5835;1.5835 +;-;-;- + 60 + NaN NaN 116055.7 NaN 5639 2444 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8086 43.05 NaN 111630 35 0 14317 0.261 -1 RYLSPKYIKMF 11 40 487.93560805191515 1460.7849947559455 3 487.93536376953125 MULTI HCD FTMS 0 0 0 8082 36671.984375 0.08967573625584935 -17 0.43457794189453125 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 4.892313526108731 0.39746464132392845 2 P 1 -1 6.9897 0 0 0.47849 0 0 633.3718137131115 727.3350313775999 1360.7068450907113 0 0 0 0 0 0 0 0 0 P 0.47849 + + 7 + NaN NaN 92642.5 NaN 5640 2444 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8087 43.053 NaN 55729 35 0 6268.9 0.261 -1 YPESESIMM 9 31 559.7224742459309 1117.4303955586618 2 559.7224731445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7041 0 0 805.3465443341812 0 805.3465443341812 0 28.622731327798547 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7041 + + 25 NaN NaN 96102.6 NaN 5641 2444 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8088 43.056 NaN 34996 35 0 5567.5 0.262 + 10735 IRCSSDWP 8 28 482.2230929207107 962.4316329082214 2 482.2227478027344 MULTI HCD FTMS 0 0 0 8082 19561.30859375 0.8139141970364437 2 -0.0493316650390625 6 Unmodified _IRCSSDWP_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX 2.0597508629832335 0.5389364538378849 2 E 1 8 6.9897 0 0 0.72625 0 0 512.2237299314621 318.1439608209594 830.3676907524216 0 0 0 0 0 0 0 0 0 E 0.72625 - 1 + NaN NaN 81758.5 NaN 5642 2444 8082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8090 43.061 NaN 801180 35 0 244840 0.327 + 24824 RYPSLWRRL 9 76 416.2436918347977 1245.7092461045931 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8089 292559.625 0.21266132844081778 -16 0.40485382080078125 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 39.212999716063884 0.06895754945631974 2 {I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[WR]{I|L}R 9 4 + 41.505 0 0 3.3319 3.3319 83.483 0 0 0 20.25531031637335 15.541178391744133 15.541178391744133 7.697953115119056 0 0.8494850021680094 0 0.4247425010840047 1.1861818737241734 {I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[WR]{I|L}R;RY[{I|L}P]S[WR]{I|L}R;R{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[WR]{I|L}R 3.3319;2.7139;2.3662 -;-;- 230 + NaN NaN 224217.6 NaN 5643 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8091 43.066 NaN 82516 35 0 11292 0.261 -1 RYQQWMERF 9 47 453.88003143201183 1358.6182648962356 3 454.21441650390625 MULTI HCD FTMS 0 0 0 8089 23904.935546875 0.058292551387328514 60 -1.6633529663085938 2 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 12.174745833636585 0.2551692358394414 2 W 1 -1 14.732 0 0 1.0843 0 0 597.2575556288217 572.2565053324208 1169.5140609612426 0 0 0 0 0 0.9247425010840047 0 0 0 W 1.0843 + + 21 + NaN NaN 112036.9 NaN 5644 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8092 43.069 NaN 73866 35 0 7256.5 0.261 -1 0 37 624.3521603831508 1870.0346517496523 3 624.6864013671875 MULTI HCD FTMS 0 0 0 8089 21132.001953125 0.5712675709795503 1 -0.026317596435546875 3 NaN NaN 2 A 1 -1 6.9897 0 0 0.37377 0 0 466.6522797787523 1329.3209932916627 1795.973273070415 0 0 0 0 0 0 0 0 0 A 0.37377 - 4 + NaN NaN 95432.7 NaN 5645 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8093 43.073 NaN 55526 35 0 8265.2 0.261 -1 RADQFEYVM 9 28 587.7635195260096 1173.5124861188192 2 587.7636108398438 MULTI HCD FTMS 0 0 0 8089 17528.51953125 0.03415207315892564 27 -0.7381515502929688 4 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 12.240655878213236 0.2545997876781172 2 EYV{M(Oxidation (M))|F} 4 -1 37.713 0 0 3.2137 0 0 617.28911025215 0 617.28911025215 0 30.723010016729653 0 0 0 1 0 0 0 EYV{M(Oxidation (M))|F} 3.2137 + + 22 NaN NaN 91153.7 NaN 5646 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8094 43.076 NaN 84886 35 0 13804 0.261 + 16128 LPTERELLR 9 36 563.8324034545626 1125.6502539759251 2 563.8316650390625 MULTI HCD FTMS 0 0 0 8089 16808.927734375 0.5974012658879826 1 -0.026317596435546875 5 Unmodified _LPTERELLR_ ENST00000416191.2_1_10:101190955-101193337:+|nuORF 5.731851221503515 0.3075653528928475 2 {I|L}[R{I|L}] 3 6 13.952 0 0 1.2395 0 0 725.3704821026814 0 725.3704821026814 0 13.952424927286843 0 0 0 0.5 0 0 0 + {I|L}[R{I|L}] 1.2395 + + 3 + NaN NaN 115214.9 NaN 5647 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8095 43.079 NaN 28305 35 0 5076 0.261 + 6513 FPISDDRNSSV 11 24 618.7967676691092 1235.5789824050182 2 619.2977294921875 MULTI HCD FTMS 0 0 0 8089 10113.828125 0.5484660832636226 9 -0.2635993957519531 6 Unmodified _FPISDDRNSSV_ ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B 6.630372943996041 0.3898421031449734 2 {I|L}[EP] 3 10 13.952 0 0 1.1292 0 0 878.36918837715 0 878.36918837715 0 11.478174818886375 0 0 0 0.5 0 0 0 {I|L}[EP] 1.1292 - 2 NaN NaN 90010.7 NaN 5648 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8096 43.082 NaN 72506 35 0 8098.8 0.262 -1 YLKPRMQI 8 46 532.801649432449 NaN 0 532.740966796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _YLKPRM(Oxidation (M))QI_ ENSG00000159256|ENST00000400485|MORC3;MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant 9.347437153973935 0.38822285293237185 2 QA 2 -1 15.217 0 0 1.4307 0 0 258.1821430037667 603.2886446588499 861.4707876626167 0 0 0 0 0 0 0 0 0.4247425010840047 QA 1.4307 - 10 + NaN NaN 93256.3 NaN 5649 2445 8089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8098 43.088 NaN 323250 35 0 83329 0.327 -1 0 63 503.76406399053815 1005.5135750478763 2 503.76385498046875 MULTI HCD FTMS 0 0 0 8097 83280.8828125 0.10312602279989044 10 -0.29325103759765625 1 NaN NaN 2 {I|L}{I|L} 2 -1 19.949 0 0 1.9839 0 0 761.3324452130875 0 761.3324452130875 0 1.365006360318688 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L} 1.9839 - 19 NaN NaN 145138.1 NaN 5650 2446 8097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8099 43.092 NaN 218440 35 0 63793 0.261 + 16677 LWQRNLRQF 9 51 420.9037926393148 1259.6895485181444 3 420.90350341796875 MULTI HCD FTMS 0 0 0 8097 94606.53125 0.23919287773996664 -15 0.3785285949707031 2 Unmodified _LWQRNLRQF_ ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-2|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 8.745405648335112 0.2847203663274469 2 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.1097 0 0 1094.6111926605256 0 1094.6111926605256 0 0.8187876199097825 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1097 + + 31 + NaN NaN 111923.4 NaN 5651 2446 8097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8100 43.096 NaN 332370 35 0 103330 0.261 + 24172 RYFDPANGKF 10 46 607.8012916224915 1213.5880303117829 2 607.8013916015625 MULTI HCD FTMS 0 0 0 8097 135488.265625 0.22718805075996687 -5 0.125152587890625 3 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 37.07464296494664 0.1707926854601146 2 DPANGK{M(Oxidation (M))|F} 7 3 52.356 0 0 4.3142 0 0 466.2329579084 0 466.2329579084 0 9.21999755554296 0 0 0 0.5 0 0.8807196863200843 0 + DPANGK{M(Oxidation (M))|F} 4.3142 + + 321 NaN NaN 129153.9 NaN 5652 2446 8097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8101 43.099 NaN 297210 35 0 45210 0.264 -1 LASALRYKMTI 11 62 436.9167223548037 1307.7283376646112 3 436.9167175292969 MULTI HCD FTMS 0 0 0 8097 47511.76953125 0.6894831121317266 -2 0.0493316650390625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LASALRYKMTI_ ENST00000558034.1_1_3:53321600-53322346:-|nuORF 1.214830529360525 0.41359283248740725 2 {I|L}AAV{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 7 -1 34.737 0 0 2.6563 0 0 595.269798930961 0 595.269798930961 0 -3.3994806169435066 -3.3994806169435066 0 0 0 0 0 0 {I|L}AAV{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 2.6563 - 99 + NaN NaN 125063.7 NaN 5653 2446 8097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8102 43.102 NaN 115740 35 0 10541 0.261 -1 KYIQEAEML 9 45 570.7840297513064 1139.5535065694128 2 570.7840576171875 MULTI HCD FTMS 0 0 0 8097 45838.97265625 0.791115192943078 2 -0.046077728271484375 5 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ ENSG00000101138|ENST00000217109|CSTF1 32.037481411007896 0.10189719824197178 2 QEAE{M(Oxidation (M))|F}{I|L} 6 -1 58.677 0 0 5.1491 0 0 404.2416249005875 0 404.2416249005875 0 47.70812200728862 0 0 0 2.2302046884880937 0 0 0 QEAE{M(Oxidation (M))|F}{I|L} 5.1491 + + 58 NaN NaN 98892.6 NaN 5654 2446 8097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8103 43.106 NaN 21393 35 0 3838.8 0.261 -1 HFMKEKEQW 9 19 639.80126953125 NaN 0 639.80126953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _HFM(Oxidation (M))KEKEQW_ MANEAL|p.I449M|1|0.71|ENSG00000185090|chr1:37800176-37800176|C/G|missense_variant 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85649.5 NaN 5655 2446 8097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8105 43.111 NaN 477710 35 0 19797 0.327 -1 RRHHRCRRQRP 11 73 538.9667178894923 1613.8783242686768 3 539.3009643554688 MULTI HCD FTMS 0 0 0 8104 89711.9296875 0.657494124817034 -2 0.049381256103515625 1 Carbamidomethyl (C) _RRHHRC(Carbamidomethyl (C))RRQRP_ ENSG00000163202|ENST00000368787|LCE3D 0 0.41892066650488113 2 KHWNSH 6 -1 45.438 0 0 2.8155 0 0 806.475542474468 0 806.475542474468 0 25.885540741363187 0 0 0 0.3807196863200844 0 0.5 0 KHWNSH 2.8155 - 179 NaN NaN 158755.8 NaN 5656 2447 8104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8106 43.115 NaN 256980 35 0 42557 0.261 + 26245 SQEAPEAPL 9 50 471.2324193860101 940.4502858388203 2 471.2320861816406 MULTI HCD FTMS 0 0 0 8104 65598.609375 0.42279391290345353 5 -0.14818954467773438 2 Unmodified _SQEAPEAPL_ ENSG00000137337|ENST00000376406|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;nc|ENSG00000137337|Q14676-3|MDC1 20.453626601364224 0.18364154288633264 2 Q[VS]{I|L} 4 7 10.696 0 0 1.1373 0 0 495.19627577949376 0 495.19627577949376 0 2.5970910658541513 0 0 0 0 0 0.3252574989159953 0.3252574989159953 Q[VS]{I|L} 1.1373 - 16 NaN NaN 121181.6 NaN 5657 2447 8104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8107 43.119 NaN 115370 35 0 20952 0.261 -1 LYNRTMVQL 9 48 577.3054459713474 1152.5963390094946 2 577.305419921875 MULTI HCD FTMS 0 0 0 8104 34556.44140625 0.5186213485979819 -6 0.14821624755859375 3 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 11.494710602746466 0.2610445893512368 2 VQ{I|L} 3 -1 26.198 0 0 2.2729 0 0 794.3732166974625 0 794.3732166974625 0 20.713337517843655 0 0 0 0 0 0 0 VQ{I|L} 2.2729 + + 19 NaN NaN 102044.1 NaN 5658 2447 8104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8108 43.122 NaN 46435 35 0 5731.2 0.261 + 13048 KYLAHLEQL 9 38 557.8162653783921 1113.6179778235842 2 557.8147583007812 MULTI HCD FTMS 0 0 0 8104 14323.658203125 0.05027383517258407 14 -0.4016838073730469 4 Unmodified _KYLAHLEQL_ ENSG00000162645|ENST00000370466|GBP2 8.745405648335112 0.2847203663274469 2 {I|L}EQ{I|L} 4 5 30.349 0 0 2.7253 0 0 612.3374500959 0 612.3374500959 0 24.240247145042062 0 0 0 0.3807196863200844 0 0 0 + {I|L}EQ{I|L} 2.7253 + + 17 NaN NaN 90209.7 NaN 5659 2447 8104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8109 43.125 NaN 146490 35 0 27415 0.261 + 28749 TTASVVIIR 9 47 480.29793684479137 958.5813207563828 2 480.29736328125 MULTI HCD FTMS 0 0 0 8104 44466.80078125 0.5116229892389068 -4 0.09212875366210938 5 Unmodified _TTASVVIIR_ ENSG00000170836|ENST00000305921|PPM1D;nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant 39.94969957227396 0.06557568441294001 2 VSA[PS] 5 7 29.961 0 0 3.1255 0 0 499.34757410264257 0 499.34757410264257 0 10.779550148593483 0 0 0 0.7742275032520141 0 0 0 VSA[PS] 3.1255 - 52 NaN NaN 118544.5 NaN 5660 2447 8104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8110 43.129 NaN 21293 35 0 3926.6 0.261 + 32832 WVEHVLEAPW 10 23 633.3167724609375 NaN 0 633.3167724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _WVEHVLEAPW_ REV__ENST00000515213.1_1_7:420976-421372:+|nuORF 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86809 NaN 5661 2447 8104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8112 43.134 NaN 452440 35 0 105680 0.327 + 33433 YGSRLDYFQ 9 66 574.7723339914191 1147.5301150496382 2 574.7721557617188 MULTI HCD FTMS 0 0 0 8111 180496.84375 0.7597674776212601 1 -0.0296630859375 1 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 STSVS{[DS]|[MA]|[CV]|TT} 7 7 50.974 0 0 4.442 0 0 466.2331715314469 0 466.2331715314469 0 26.012969751618087 0 0 0 1.1989700043360187 0 0.4247425010840047 0 STSVS{[DS]|[MA]|[CV]|TT} 4.442 - 176 NaN NaN 166262.5 NaN 5662 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8113 43.138 NaN 243900 35 0 44068 0.261 + -1 MSSLHGTREE 10 42 581.762101582647 1161.509650232094 2 581.7618408203125 MULTI HCD FTMS 0 0 0 8111 122384.7265625 0.749333622506693 1 -0.0296630859375 2 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 12.240655878213236 0.39661705172222156 2 TSVS{[ES]|[DT]|[{I|L}C]} 6 -1 44.759 0 0 3.8535 0 0 553.2652455060562 0 553.2652455060562 0 34.301308643370604 0 0 0 1.7302046884880937 0 0.4247425010840047 0 TSVS{[ES]|[DT]|[{I|L}C]} 3.8535 - 51 NaN NaN 131235.8 NaN 5663 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8114 43.142 NaN 564030 35 0 99807 0.261 + 21774 QAHLEVQQL 9 67 533.2880311333489 1064.5615093334977 2 533.287841796875 MULTI HCD FTMS 0 0 0 8111 200065.640625 0.13680196514797074 -4 0.09540939331054688 3 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 103.35351024395868 0.004027461563756449 2 [Q{I|L}]E[HA]VQQ{I|L} 9 4 + 81.022 0 0 7.6109 7.6109 87.548 0 0 0 1.7609125905568135 16.478174818886373 1.7609125905568135 1.7609125905568135 0 1.4247425010840047 0 1.4361818737241734 1.6549471895720984 [Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}][HA]EVQQ{I|L};[Q{I|L}]EVHAQQ{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}QVHAQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L} 7.6109;7.4455;7.1627;6.8052;6.7459;6.7459;6.6398;6.5805;6.5805;6.5805 -;-;-;-;-;-;-;-;-;- 640 NaN NaN 168140.5 NaN 5664 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8115 43.145 NaN 107870 35 0 7375.5 0.261 -1 WQRIPKMM 8 57 561.2821937893407 1120.5498346454813 2 560.7659301757812 MULTI HCD FTMS 0 0 0 8111 18819.703125 0.32412790590110174 -10 0.25359344482421875 4 2 Oxidation (M) _WQRIPKM(Oxidation (M))M(Oxidation (M))_ ENST00000467021.1_1_1:166831573-166831606:-|nuORF 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8713 0 0 808.4684665795045 0 808.4684665795045 0 12.552725051033063 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8713 + + 82 + NaN NaN 96761.1 NaN 5665 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8116 43.148 NaN 43757 35 0 5782.5 0.261 -1 FADRLYDSM 9 29 567.2502883310053 1132.4860237288106 2 567.2510375976562 MULTI HCD FTMS 0 0 0 8111 19917.080078125 0.45359439556850795 4 -0.12517547607421875 5 Oxidation (M) _FADRLYDSM(Oxidation (M))_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 7.101721422024254 0.29718071671418667 2 YDS{M(Oxidation (M))|F} 4 -1 25.918 0 0 2.2886 0 0 602.3170033185562 0 602.3170033185562 0 18.927900303521312 0 0 0 0 0 0 0 YDS{M(Oxidation (M))|F} 2.2886 + + 7 NaN NaN 95483.1 NaN 5666 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8117 43.152 NaN 95027 35 0 10377 0.261 -1 YALMTVILC 9 50 550.2804054201123 1098.5462579070245 2 550.280029296875 MULTI HCD FTMS 0 0 0 8111 9465.6611328125 0.4614969913394417 1 -0.0296630859375 6 Carbamidomethyl (C),Oxidation (M) _YALM(Oxidation (M))TVILC(Carbamidomethyl (C))_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|71 18.13498045792455 0.20367413111508956 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 37.447 0 0 3.4088 0 0 0 748.3388964170432 748.3388964170432 34.34833115752497 0 0 0 0 1 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3.4088 + + 23 NaN NaN 108584.6 NaN 5667 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8118 43.155 NaN 50895 35 0 5947.6 0.261 + 5060 FDSDVGVYR 9 28 529.2511549392353 1056.4877569452706 2 529.2514038085938 MULTI HCD FTMS 0 0 0 8111 10457.19921875 0.014675537573246038 27 -0.7409591674804688 7 Unmodified _FDSDVGVYR_ ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF 13.042465956692817 0.2476723265019929 2 RV{[DS]|[MA]|[CV]|TT}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6 7 21.923 0 0 2.0751 0 0 337.17582900215 0 337.17582900215 0 21.923487412610356 0 0 0 0.9247425010840047 0 0 0 RV{[DS]|[MA]|[CV]|TT}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 2.0751 - 22 NaN NaN 104487.1 NaN 5668 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8119 43.158 NaN 39266 35 0 5022.2 0.261 + 35421 YYEEQHPEL 9 30 604.2670384843465 1206.5195240354929 2 604.2664184570312 MULTI HCD FTMS 0 0 0 8111 11219.13671875 0.0052377019932576905 91 -2.4981651306152344 8 Unmodified _YYEEQHPEL_ ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001|IL32 10.823927491677226 0.26684000660059787 2 YYE 3 6 38.952 0 0 3.2285 0 0 0 748.3256319635374 748.3256319635374 38.95242492728684 0 0 0 0 0.4247425010840047 2 0.4247425010840047 0 + YYE 3.2285 + + 2 + NaN NaN 86704.8 NaN 5669 2448 8111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8121 43.163 NaN 1712700 35 0 293280 0.327 + 24538 RYLEQLHQL 9 90 600.3303215263323 1198.6460901194646 2 600.330322265625 MULTI HCD FTMS 0 0 0 8120 891751.6875 1 0 0 1 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 151.47984550603806 7.261867933578587E-06 2 [YR]{I|L}EQ{I|L}HQ{I|L} 9 0 + 94.804 0 0 7.9092 7.9092 91.908 0 0 0 4.762036441594191 53.46910013008056 4.762036441594191 9.208187539523749 0 2.4361818737241734 0 0.6307196863200843 1.4291746928241125 + + [YR]{I|L}EQ{I|L}HQ{I|L};[YR]{I|L}EQ{I|L}H[AG]{I|L};[YR]{I|L}E[AG]{I|L}HQ{I|L};[VP][HV]EQ{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};RY{I|L}EQ{I|L}HQ{I|L};{I|L}E[YR]Q{I|L}HQ{I|L};[YR]{I|L}E[AG]{I|L}H[AG]{I|L};[VP][HV]EQ{I|L}H[AG]{I|L};{I|L}[YR]EQ{I|L}HQ{I|L} 7.9092;7.141;7.141;6.8697;6.7855;6.6506;6.4942;6.3765;6.1051;6.0807 +;-;-;-;-;+;-;-;-;- + 2791 NaN NaN 360062.6 NaN 5670 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8122 43.168 NaN 423000 35 0 90842 0.261 + 8998 HPEEGDLDL 9 54 512.732739014932 1023.450925096664 2 512.732666015625 MULTI HCD FTMS 0 0 0 8120 272088.3125 0.21877117841300664 13 -0.368621826171875 2 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 58.678817012210395 0.019429721296335044 2 {I|L}[DG]EEC{I|L} 7 7 42.484 0 0 4.1511 0 0 246.12135512519689 0 246.12135512519689 0 11.497519816658368 0 0 0 1.7302046884880937 0 0.4247425010840047 0 {I|L}[DG]EEC{I|L} 4.1511 - 107 NaN NaN 153984.1 NaN 5671 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8123 43.171 NaN 258710 35 0 40910 0.261 + 5822 FPDAREQEI 9 52 552.7695674698707 1103.5245820065413 2 552.7697143554688 MULTI HCD FTMS 0 0 0 8120 127731.375 0.5216332948581192 -9 0.22394561767578125 3 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 57.24910588100465 0.021429789259086996 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 72.374 0 0 6.5584 6.5584 89.526 0 0 0 16.66772480037345 24.149605070435456 16.66772480037345 9.208187539523749 0 1.3182503180159344 1.6989700043360187 0.7302046884880937 0.3807196863200844 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]AR{M(Oxidation (M))|F}EQ{I|L}E;{[QN]|[E{I|L}]|[KN]}ET{[QD]|[EN]|[WG]|[KD]|[RS]}Q{I|L}E;[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};{[QN]|[E{I|L}]|[KN]}E[KS]{[WS]|[C(Carbamidomethyl (C)){I|L}]}PE 6.5584;5.724;5.6239;4.7895;4.3647;3.9121;3.5515;3.5303;3.4302;3.2602 -;-;+;-;-;-;-;-;-;- + 525 NaN NaN 120060.7 NaN 5672 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8124 43.175 NaN 477690 35 0 41397 0.261 + 13364 KYMTAVVKL 9 87 526.8124469231279 1051.6103409130558 2 526.8121948242188 MULTI HCD FTMS 0 0 0 8120 212161.96875 0.7503526197531164 -1 0.0296630859375 4 Unmodified _KYMTAVVKL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 71.70789743142352 0.008535567138151097 2 KYM[TA]VVK{I|L} 9 0 + 46.543 0 0 4.4258 4.4258 84.562 0 0 0 27.40106371107443 0.41686396981467055 0.41686396981467055 7.403626894942441 0 1.8539171939081172 0 0.28872548999643577 0.3054621874040891 + + KYM[TA]VVK{I|L};KY{[CT]|[{M(Oxidation (M))|F}G]}VVVK{I|L};[{I|L}T]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}GKVK{I|L};[{I|L}T]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}GKV{I|L}K;{[QV]|[N{I|L}]|[RA]|[KV]}{[CT]|[{M(Oxidation (M))|F}G]}[YV]VK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[CT]|[{M(Oxidation (M))|F}G]}[YV]V{I|L}K;[YK]K{[QN]|[E{I|L}]|[KN]}MK{I|L};[YK]K{[QN]|[E{I|L}]|[KN]}M{I|L}K 4.4258;3.7218;3.1209;2.8897;2.2719;2.0408;1.8051;1.574 +;-;-;-;-;-;-;- + 411 + NaN NaN 170635.5 NaN 5673 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8125 43.178 NaN 388930 35 0 91420 0.262 + -1 YMCELLGLCE 10 55 435.1836309738161 1302.5290635216484 3 435.1839904785156 MULTI HCD FTMS 0 0 0 8120 118381.34375 0.902400213057946 -1 0.0296630859375 5 2 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))C(Carbamidomethyl (C))ELLGLC(Carbamidomethyl (C))E_ REV__ENSG00000163467|ENST00000368254|TSACC 5.783430956126388 0.4446910851847804 2 PMPA 4 -1 23.532 0 0 1.8066 0 0 387.0934863682009 516.2212008111936 903.3146871793945 0 0 0 0 0 0.8494850021680094 0 0 0 PMPA 1.8066 - 34 + NaN NaN 153938 NaN 5674 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8126 43.181 NaN 215950 35 0 33649 0.261 + 30613 VPCKVEPGL 9 49 471.2599702188261 940.5053875044522 2 471.2598876953125 MULTI HCD FTMS 0 0 0 8120 54990.87109375 0.07131517840548615 27 -0.7410087585449219 6 Unmodified _VPCKVEPGL_ ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 13.042465956692817 0.2476723265019929 2 VW 2 8 25.217 0 0 2.6812 0 0 0 652.3152891243465 652.3152891243465 21.237125054200234 0 0 0 0 0.4247425010840047 0 0 0 VW 2.6812 - 17 + NaN NaN 126143.6 NaN 5675 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8127 43.185 NaN 71741 35 0 6099 0.261 -1 VMSQALKATF 10 42 556.2943839406294 1110.5742149480586 2 556.2942504882812 MULTI HCD FTMS 0 0 0 8120 18508.29296875 0.0621007919231327 12 -0.34900665283203125 7 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 7.608950283845883 0.4350283211712914 2 [Y{I|L}]VC(Carbamidomethyl (C)) 4 -1 29.297 0 0 2.638 0 0 0 572.2937333408898 572.2937333408898 9.590606190045108 0 0 0 0 0 2 0 0 [Y{I|L}]VC(Carbamidomethyl (C)) 2.638 - 86 NaN NaN 95347.3 NaN 5676 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8128 43.188 NaN 175380 35 0 13169 0.261 -1 0 65 543.6278864607941 3255.723659965164 6 543.7948608398438 MULTI HCD FTMS 0 0 0 8120 18840.0859375 0.3213187342936085 -2 0.052677154541015625 8 NaN NaN 2 {[DS]|[MA]|[CV]|TT}MQVE 6 -1 30.355 0 0 0.93234 0 0 0 2563.4126607798703 2563.4126607798703 8.416375079047498 0 0 0 0 0 1.3979400086720375 0 0 {[DS]|[MA]|[CV]|TT}MQVE 0.93234 - 268 NaN NaN 108220 NaN 5677 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8129 43.191 NaN 54334 35 0 7199.7 0.261 + 31009 VSLFCKRF 8 33 500.27715292845664 998.5397529237133 2 500.2772521972656 MULTI HCD FTMS 0 0 0 8120 26134.740234375 0.5596948307085665 5 -0.16154098510742188 9 Unmodified _VSLFCKRF_ REV__ENST00000442325.6_1_18:33721144-33722806:+|nuORF 2.302733041254933 0.5385759549224092 2 VS 2 -1 16.454 0 0 1.6478 0 0 149.10536521585408 660.3099561693209 809.415321385175 0 0 0 0 0 0 0 1 0 VS 1.6478 + + 6 + NaN NaN 95557.8 NaN 5678 2449 8120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8131 43.196 NaN 1837000 35 0 315420 0.327 + 24177 RYFDPANGKF 10 94 405.5366247218027 1213.5880447656082 3 405.5364990234375 MULTI HCD FTMS 0 0 0 8130 709291.375 0.9471560644038569 -1 0.03296661376953125 1 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 80.6760300276096 0.004935188130137892 2 MPANGK{M(Oxidation (M))|F} 7 4 64.277 0 0 5.2964 0 0 450.22849994314566 0 450.22849994314566 0 50.052078466666885 0 0 0 2.4247425010840047 0 0 1.110924374808178 MPANGK{M(Oxidation (M))|F} 5.2964 - 1059 + NaN NaN 357082.9 NaN 5679 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8132 43.201 NaN 162710 35 0 15709 0.261 + 21725 QADQVDVKL 9 55 508.2744335532907 1014.5343141733814 2 508.2743835449219 MULTI HCD FTMS 0 0 0 8130 85152.421875 0.6804829648414856 2 -0.0625457763671875 2 Unmodified _QADQVDVKL_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 40.23920728925047 0.06424668180817725 2 [QA]DQVDV[K{I|L}] 9 0 + 37.457 0 0 3.6921 3.6921 85.915 0 0 0 21.539843494255003 7.147642715192511 7.147642715192511 9.208187539523756 0 0.7614393726401688 0 0 0 + + [QA]DQVDV[K{I|L}];[QA]D[AG]VDV[K{I|L}] 3.6921;2.7845 +;- + 69 + NaN NaN 110875.2 NaN 5680 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8133 43.204 NaN 214010 35 0 30919 0.261 -1 VSLVCPAVP 9 52 471.2599702188261 940.5053875044522 2 471.259521484375 MULTI HCD FTMS 0 0 0 8130 30915.376953125 0.04009275683460748 28 -0.7606391906738281 3 Carbamidomethyl (C) _VSLVC(Carbamidomethyl (C))PAVP_ ENSG00000214929|ENST00000344803|SPATA31D1 7.289230182591677 0.29575926068275815 2 VW 2 -1 25.217 0 0 2.6812 0 0 0 652.3141960235478 652.3141960235478 21.237125054200234 0 0 0 0 0.4247425010840047 0 0 0 VW 2.6812 - 8 + NaN NaN 110517.8 NaN 5681 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8134 43.208 NaN 123890 35 0 12980 0.261 -1 YPESESIMM 9 35 559.7224742459309 1117.4303955586618 2 559.7224731445312 MULTI HCD FTMS 0 0 0 8130 44406.34765625 0.35323662600849953 -10 0.2569122314453125 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 36.04419817259434 0.08350412372117409 2 T{M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 53.136 0 0 4.7552 0 0 63.996375639757 0 63.996375639757 0 46.146387799684874 0 0 0 0.5 0 0.8494850021680094 0 T{M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7552 - 61 + NaN NaN 106157 NaN 5682 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8135 43.211 NaN 68496 35 0 4725.4 0.261 + -1 RCPVCLVF 8 42 497.2537427918074 992.4929326504148 2 497.2539978027344 MULTI HCD FTMS 0 0 0 8130 21177.0546875 0.09238107312371707 10 -0.2797737121582031 5 Carbamidomethyl (C) _RCPVC(Carbamidomethyl (C))LVF_ REV__ENST00000356387.6_1_7:102089428-102089692:+|nuORF 2.577480529830294 0.5381683276125971 2 D 1 -1 6.9897 0 0 0.70426 0 0 148.1193692639925 726.3233736627561 874.4427429267487 0 0 0 0 0 0 0 0 0 D 0.70426 - 6 + NaN NaN 103714 NaN 5683 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8136 43.214 NaN 130020 35 0 14062 0.261 + 6029 FPDSRSPGL 9 39 488.24878361039663 974.4830142875933 2 488.249267578125 MULTI HCD FTMS 0 0 0 8130 16655.470703125 0.3648640449878564 9 -0.2634429931640625 6 Unmodified _FPDSRSPGL_ ENSG00000156463|ENST00000359120|SH3RF2 12.240655878213236 0.2545997876781172 2 DPE 3 7 30.005 0 0 3.0791 0 0 615.3304310529312 0 615.3304310529312 0 23.098943791441968 0 0 0 0.3807196863200844 0 0 0 DPE 3.0791 - 14 NaN NaN 105411.2 NaN 5684 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8137 43.217 NaN 117950 35 0 17974 0.261 -1 0 41 505.08685927807176 NaN 0 505.1036071777344 PEAK HCD FTMS 0 0 0 8130 15032.80859375 0.8121096031711196 14 -0.3881950378417969 7 NaN NaN 2 VE 2 -1 6.4537 0 0 0.64014 0 0 265.808409862981 511.21662317447493 777.025033037456 0 0 0 0 0 0 0 0 0 VE 0.64014 - 9 + NaN NaN 112096.8 NaN 5685 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8138 43.221 NaN 46372 35 0 9500.4 0.261 + 9793 HYLFCDMYI 9 28 602.7616757651164 1203.5087985970326 2 602.7611083984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _HYLFCDMYI_ ENSG00000262628|ENST00000575751|OR1D5;nc|ENSG00000262628|P47884|OR1D4 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F}{I|L} 2 7 19.464 0 0 1.6173 0 0 925.3433094709 0 925.3433094709 0 19.463950151760656 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.6173 - 3 NaN NaN 88492.8 NaN 5686 2450 8130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8140 43.226 NaN 1519000 35 0 474630 0.326 + 24825 RYPSLWRRL 9 88 416.2436918347977 1245.7092461045931 3 416.24359130859375 MULTI HCD FTMS 0 0 0 8139 524825.375 0.3814950933402049 -10 0.26346588134765625 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 36.39500950444726 0.08189370318150108 2 [YR][PS]{I|L}WR 7 2 32.903 0 0 2.6413 0 0 0 284.175006530302 284.175006530302 -1.750452872914245 0 -1.750452872914245 0 0 1.305462187404089 0 0.6861818737241735 0.23965182871044374 + [YR][PS]{I|L}WR 2.6413 + + 457 NaN NaN 324591.6 NaN 5687 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8141 43.23 NaN 934840 35 0 281500 0.261 + 8155 GPHSPDPLL 9 64 466.7455438315552 931.4765347299104 2 466.7452087402344 MULTI HCD FTMS 0 0 0 8139 415898.53125 0.39338533442659973 -3 0.09223556518554688 2 Unmodified _GPHSPDPLL_ ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 57.47134341890925 0.0211188941628804 2 [DP]SHPGP{I|L}{I|L} 9 4 + 58.356 0 0 6.2649 6.2649 89.747 0 0 0 4.137342758552691 30.84752853788089 4.137342758552691 9.273174902439578 0 0.9247425010840047 0 1.1307196863200843 0 [DP]SHPGP{I|L}{I|L};[DP]SHPG{I|L}P{I|L};[HS][DP]PGP{I|L}{I|L};[HS][PG][DP]P{I|L}{I|L};[HS][DP]PG{I|L}P{I|L};[HS][PG][DP]{I|L}P{I|L};[YQ]NQGP{I|L}{I|L};[HS][PG][{I|L}P]DP{I|L};[YQ]GGQGP{I|L}{I|L} 6.2649;5.2694;4.6374;4.0026;3.6418;3.0071;2.1968;1.368;1.2024 -;-;-;-;-;-;-;-;- 226 NaN NaN 224126.4 NaN 5688 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8142 43.234 NaN 237370 35 0 27184 0.261 + 19367 NPDPDAETL 9 46 486.21961321028635 970.4246734873727 2 486.2194519042969 MULTI HCD FTMS 0 0 0 8139 115392.140625 0.25473077294269747 -3 0.09223556518554688 3 Unmodified _NPDPDAETL_ ENSG00000264230|ENST00000619162|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;nc|ENSG00000276850|P13928-2|ANXA8 38.175570920033316 0.07371992880350783 2 AET{I|L} 4 5 42.735 0 0 4.4038 0 0 538.2031117169937 0 538.2031117169937 0 16.53720958383822 0 0 0 1 0 0.3807196863200844 0 + AET{I|L} 4.4038 + + 44 NaN NaN 123186.4 NaN 5689 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8143 43.237 NaN 279310 35 0 46943 0.261 -1 AYLSKAMEI 9 51 521.2692335453933 1040.5239141575864 2 521.2711181640625 MULTI HCD FTMS 0 0 0 8139 50241.0234375 0.4962619366841218 17 -0.4705810546875 4 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ ENSG00000124784|ENST00000379834|RIOK1 36.506200033944 0.08138327636155518 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PHKS{I|L}SE 9 -1 + 64.403 0 0 6.1895 6.1895 87.654 0 0 0 11.914543788274798 11.276362525516532 11.276362525516532 8.26606256887672 0 1.829689690656103 2 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PHKS{I|L}SE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PHKSS{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PHKSSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SKHPPE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{I|L}SE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SS{I|L}E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SSE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[TA]S{I|L}C{I|L};{M(Oxidation (M))|F}S{I|L}S[TA]S{I|L}C{I|L} 6.1895;5.395;5.1057;5.0444;4.5554;4.4817;4.2661;4.1924;3.8524;3.0195 -;-;-;-;-;-;-;-;-;- 153 NaN NaN 127658.9 NaN 5690 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8144 43.24 NaN 102390 35 0 24357 0.261 -1 KYLEDMKTYF 10 39 451.8846045242354 1352.6319841729062 3 451.8844299316406 MULTI HCD FTMS 0 0 0 8139 41130.3125 1 0 0 5 Oxidation (M) _KYLEDM(Oxidation (M))KTYF_ ENSG00000242550|ENST00000238508|SERPINB10 17.04857598603903 0.3516453892342385 2 S{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.8086 0 0 1100.5219968455608 0 1100.5219968455608 0 16.989700043360187 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 1.8086 - 11 + NaN NaN 96410.8 NaN 5691 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8145 43.244 NaN 43985 35 0 5467.3 0.261 + 24415 RYKPGEPITF 10 32 604.3274814552203 1206.6404099772406 2 604.2671508789062 MULTI HCD FTMS 0 0 0 8139 9582.525390625 0.39114082224945557 -1 0.029605865478515625 6 Unmodified _RYKPGEPITF_ DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant;ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B 7.608950283845883 0.4350283211712914 2 E 1 9 5.4846 0 0 0.45453 0 0 326.2454037289968 748.3230684869749 1074.5684722159717 0 0 0 0 0 0 0 0 0 + E 0.45453 + + 5 + NaN NaN 103497.8 NaN 5692 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8146 43.247 NaN 56835 35 0 8187.9 0.261 -1 RADQFEYVM 9 36 587.7635195260096 1173.5124861188192 2 587.76318359375 MULTI HCD FTMS 0 0 0 8139 29085.0078125 0.056668409038740326 33 -0.9195594787597656 7 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 5.731851221503515 0.3075653528928475 2 YV{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.6585 0 0 746.3331776349625 0 746.3331776349625 0 27.21848749616356 0 0 0 0.5 0 0 0 YV{M(Oxidation (M))|F} 2.6585 + + 5 NaN NaN 101034.8 NaN 5693 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8147 43.25 NaN 25439 35 0 6721.2 0.261 + 27262 SYPKPCVFCH 10 24 590.7671363991724 1179.5197198651447 2 590.7662963867188 MULTI HCD FTMS 0 0 0 8139 12087.8037109375 0.15575994031902604 8 -0.23383712768554688 8 Unmodified _SYPKPCVFCH_ REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102739.1 NaN 5694 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8148 43.254 NaN 28546 35 0 4758.6 0.261 -1 KKVLNILLIAL 11 27 640.439697265625 NaN 0 640.439697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KKVLNILLIAL_ tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105103.1 NaN 5695 2451 8139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8150 43.259 NaN 1197900 35 0 354000 0.326 + 24173 RYFDPANGKF 10 74 607.8012916224915 1213.5880303117829 2 607.8013916015625 MULTI HCD FTMS 0 0 0 8149 536970.625 0.9003976030423199 1 -0.02974700927734375 1 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 98.72992552434107 0.00033236632029060503 2 [YR]{M(Oxidation (M))|F}DPANGK{M(Oxidation (M))|F} 10 0 + 85.486 0 0 7.0441 7.0441 89.68 0 0 0 5.004311474114331 53.53122110131274 5.004311474114331 9.164539485499262 0 2.274227503252014 0 0.8807196863200843 1.0114393726401687 + + [YR]{M(Oxidation (M))|F}DPANGK{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}DPAGGGK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YR]DPANGK{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}DP{[QN]|[E{I|L}]|[KN]}K{M(Oxidation (M))|F};[KG][YT]{[WN]|[YH]}NGK{M(Oxidation (M))|F};RY{M(Oxidation (M))|F}DPANGK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YR]DPAGGGK{M(Oxidation (M))|F};[W{I|L}]{[YC]|[HE]}[PS]NGK{M(Oxidation (M))|F};RY{M(Oxidation (M))|F}DPAGGGK{M(Oxidation (M))|F};[KG]N[PA]{M(Oxidation (M))|F}D[YR]{M(Oxidation (M))|F} 7.0441;6.2889;4.6573;4.2151;4.1875;4.0418;3.9021;3.6493;3.2867;2.1435 +;-;-;-;-;+;-;-;-;- + 1546 NaN NaN 266339.8 NaN 5696 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8151 43.263 NaN 471700 35 0 160600 0.264 + 16360 LSALDLVMKDR 11 58 420.9037926393148 1259.6895485181444 3 420.9033203125 MULTI HCD FTMS 0 0 0 8149 150230.515625 0.37982651812638757 -9 0.24031829833984375 2 Unmodified _LSALDLVMKDR_ ENSG00000005700|ENST00000306270|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK 6.234356020891411 0.3915788988406848 2 {I|L}R 2 9 23.711 0 0 1.8823 0 0 0 987.4834712465179 987.4834712465179 7.257724967479859 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.8823 - 58 + NaN NaN 152070.6 NaN 5697 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8152 43.267 NaN 358690 35 0 57553 0.261 + 496 AMNMLHELQ 9 68 543.7572721249294 1085.4999913166587 2 543.7571411132812 MULTI HCD FTMS 0 0 0 8149 75721.5625 1 0 0 3 Unmodified _AMNMLHELQ_ nc|ENSG00000226807|Q6ZUA9|MROH5 18.1463463914782 0.20357593197100715 2 [{I|L}P]WEVQMA 8 8 71.438 0 0 6.5811 0 0 0 128.00668011964618 128.00668011964618 58.00820653692661 0 0 0 0 2.1989700043360187 1.6989700043360187 0.25 0.3494850021680094 [{I|L}P]WEVQMA 6.5811 - 408 NaN NaN 140077.5 NaN 5698 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8153 43.27 NaN 115200 35 0 20131 0.261 -1 RNHMAERLC 9 40 601.7791241258609 1201.5436953185217 2 601.7792358398438 MULTI HCD FTMS 0 0 0 8149 25739.662109375 0.42559949212408676 -4 0.12517547607421875 4 Carbamidomethyl (C),Oxidation (M) _RNHM(Oxidation (M))AERLC(Carbamidomethyl (C))_ ENST00000344893.4_1_19:11759178-11789136:+|nuORF 1.844237919475145 0.33703635659052655 2 QH{I|L} 3 -1 16.198 0 0 1.3481 0 0 131.9875969144212 688.3338717096311 820.3214686240524 0 0 0 0 0 0 0 0 0 QH{I|L} 1.3481 - 31 + NaN NaN 100036.2 NaN 5699 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8154 43.273 NaN 86815 35 0 11525 0.264 -1 RYQQWMERF 9 38 453.88003143201183 1358.6182648962356 3 453.8799133300781 MULTI HCD FTMS 0 0 0 8149 26649.185546875 0.04552804307251075 66 -1.8183860778808594 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 8.97624648632007 0.2828035605319045 2 W 1 -1 13.979 0 0 1.0289 0 0 575.2822572423082 594.2348438203447 1169.517101062653 0 0 0 0 0 0.8494850021680094 0 0 0 W 1.0289 + + 9 + NaN NaN 109049.3 NaN 5700 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8155 43.277 NaN 51329 35 0 5973.2 0.261 -1 LDCCCCVKN 9 35 614.7304123628101 NaN 0 614.7302856445312 PEAK HCD FTMS 0 0 0 8149 29899.892578125 0.9966710022045748 -1 0.032939910888671875 6 4 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))VKN_ ENSG00000253457|ENST00000517349|SMIM18 1.844237919475145 0.28630992268396543 2 P 1 -1 11.237 0 0 0.91549 0 0 260.125667399645 867.2305294722901 1127.356196871935 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.91549 - 1 + NaN NaN 104826.6 NaN 5701 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8156 43.28 NaN 62464 35 0 7415.9 0.261 + -1 GLWQCPGPVL 10 36 563.7892980414551 NaN 0 563.7891235351562 PEAK HCD FTMS 0 0 0 8149 12330.6796875 0.4417566376241999 8 -0.21722793579101562 7 Carbamidomethyl (C) _GLWQC(Carbamidomethyl (C))PGPVL_ REV__ENST00000442692.2_1_11:68822646-68853210:+|nuORF 3.5964929083625545 0.337106189561315 2 V 1 -1 6.9897 0 0 0.621 0 0 131.0956351192479 892.3757437058076 1023.4713788250556 0 0 0 0 0 0 0 0 0 V 0.621 + + 1 + NaN NaN 97487.8 NaN 5702 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8157 43.283 NaN 865850 35 0 87147 0.264 -1 QESGCNECGSE 11 81 400.4697265625 NaN 0 400.4697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _QESGC(Carbamidomethyl (C))NECGSE_ ENST00000336812.4_1_4:24572357-24572459:-|nuORF 0.40826533853263924 0.34096201227758716 2 QE{I|L} 3 -1 18.5 0 0 2.3185 0 0 108.5813749580346 316.14003329135915 424.72140824939373 0 0 0 0 0 0 0 0.3807196863200844 0 QE{I|L} 2.3185 - 55 + NaN NaN 225129.8 NaN 5703 2452 8149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8159 43.289 NaN 2507600 35 0 383020 0.327 + 21775 QAHLEVQQL 9 103 533.2880311333489 1064.5615093334977 2 533.2880859375 MULTI HCD FTMS 0 0 0 8158 1431528.75 0.9788584664214783 1 -0.036281585693359375 1 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 179.17365725063826 1.1335045685127237E-12 2 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L} 9 4 + 90.175 0 0 8.4706 8.4706 89.039 0 0 0 2.046284272644044 16.478174818886373 2.046284272644044 2.046284272644044 0 1.805462187404089 0 1.821535000443423 1.9802046884880937 {[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L};[Q{I|L}][HA]EVQQ{I|L};{[QN]|[E{I|L}]|[KN]}QVHAQQ{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};[Q{I|L}]EVHAQQ{I|L} 8.4706;8.2784;7.6056;7.6056;7.6056;7.5817;7.4504;7.4134;7.4134;7.2582 -;-;-;-;-;-;-;-;-;- 3851 NaN NaN 470525.5 NaN 5704 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8160 43.293 NaN 735490 35 0 78146 0.261 + 20271 NYLSHHLTI 9 92 549.2905984047198 1096.5666438762396 2 549.2905883789062 MULTI HCD FTMS 0 0 0 8158 290045.59375 0.560518274703662 -3 0.09229278564453125 2 Unmodified _NYLSHHLTI_ ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;nc|ENSG00000172239|Q9H074-2|PAIP1;nc|ENSG00000172239|Q9H074-3|PAIP1;PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant 149.91393105778798 8.917243180786556E-06 2 [YN]{I|L}SHH{I|L}T{I|L} 9 0 + 96.411 0 0 8.7921 8.7921 97.755 0 0 0 24.588468672911887 16.478174818886373 16.478174818886373 52.062718781312356 0 2.094187677400525 2 0.9749073637206093 1.2689301784845295 + + [YN]{I|L}SHH{I|L}T{I|L};{I|L}[YN]SHH{I|L}T{I|L};[{I|L}T]{I|L}HHS[YN]{I|L};[{I|L}T]{I|L}HHS{I|L}[YN] 8.7921;4.0443;2.3357;1.6738 +;-;-;- + 725 NaN NaN 196112.7 NaN 5705 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8161 43.297 NaN 268090 35 0 45186 0.261 + 27389 SYSSTFHSL 9 60 514.7381522488979 1027.4617515645957 2 514.7381591796875 MULTI HCD FTMS 0 0 0 8158 115475.1484375 0.7151700747616143 -3 0.09229278564453125 3 Unmodified _SYSSTFHSL_ ENSG00000162825|ENST00000698833|NBPF20;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000273136|ENST00000620612|NBPF26;ENST00000491285.1_1:146215077-146250826:-|nuORF;nc|ENSG00000269713|P0DPF3-2|NBPF9;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26 43.85829265575387 0.04763305254408404 2 {[{M(Oxidation (M))|F}C]|[YS]}S[KQ]PD{[CT]|[{M(Oxidation (M))|F}G]} 9 6 + 31.431 0 0 3.059 3.059 88.317 0 0 0 10.46143408385753 2.178024757013265 2.178024757013265 28.02887198244136 0 0.4247425010840047 0 0.7059771852360797 0 {[{M(Oxidation (M))|F}C]|[YS]}S[KQ]PD{[CT]|[{M(Oxidation (M))|F}G]};[HM]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]{[CT]|[{M(Oxidation (M))|F}G]} 3.059;0.33107 -;- 110 + NaN NaN 141880.8 NaN 5706 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8162 43.3 NaN 434140 35 0 96735 0.261 + 13399 KYPDRVPVI 9 73 543.8189755008225 1085.6233980684449 2 543.8187866210938 MULTI HCD FTMS 0 0 0 8158 150929.71875 0.13844332491623318 -10 0.2700653076171875 4 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 23.789781309258295 0.1548179064208189 2 KY 2 7 25.969 0 0 2.3921 0 0 0 791.4420170687496 791.4420170687496 5.259081299784107 0 0 0 0 0.5 0 0 0 + KY 2.3921 + + 294 + NaN NaN 150252.5 NaN 5707 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8163 43.303 NaN 149900 35 0 33697 0.261 + 18838 NAEDVQHQIL 10 37 583.7937032027024 NaN 0 583.7935791015625 PEAK HCD FTMS 0 0 0 8158 61171.453125 0.713013144210225 2 -0.06259918212890625 5 Unmodified _NAEDVQHQIL_ ENSG00000072571|ENST00000393915|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR 19.625955294349634 0.2836648788097556 2 E[DV]Q 4 6 11.867 0 0 1.0181 0 0 185.0839751536485 506.2737215631469 691.3576967167954 0 0 0 0 0 0.805462187404089 0 0 0 + E[DV]Q 1.0181 + + 8 + NaN NaN 107518.7 NaN 5708 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8164 43.306 NaN 131450 35 0 26890 0.261 + 33434 YGSRLDYFQ 9 43 574.7723339914191 1147.5301150496382 2 574.7721557617188 MULTI HCD FTMS 0 0 0 8158 53998.44921875 0.22729630450055663 6 -0.17115020751953125 6 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 10.073929032068715 0.27331982688540024 2 VSVCW 5 8 31.454 0 0 2.741 0 0 555.2397328107437 0 555.2397328107437 0 16.74865027867405 0 0 0 0.5 0 0 0 VSVCW 2.741 - 60 NaN NaN 110543.1 NaN 5709 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8165 43.31 NaN 107950 35 0 11887 0.262 + 28750 TTASVVIIR 9 52 480.29793684479137 958.5813207563828 2 480.297607421875 MULTI HCD FTMS 0 0 0 8158 40285.9375 0.4635191065225622 2 -0.06259918212890625 7 Unmodified _TTASVVIIR_ ENSG00000170836|ENST00000305921|PPM1D;nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant 45.69961567697781 0.039180348357221985 2 {[DS]|[MA]|[CV]|TT}ASVV{I|L}[R{I|L}] 9 0 + 50.212 0 0 5.2382 5.2382 89.276 0 0 0 43.22228114217921 7.147642715192504 7.147642715192504 14.023722004121446 0 1.1861818737241734 0 0.4247425010840047 0 + + {[DS]|[MA]|[CV]|TT}ASVV{I|L}[R{I|L}];{[DS]|[MA]|[CV]|TT}AVVS{I|L}[R{I|L}];{[DS]|[MA]|[CV]|TT}AVVVT[R{I|L}] 5.2382;3.7752;3.064 +;-;- + 79 + NaN NaN 117957.8 NaN 5710 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8166 43.313 NaN 51061 35 0 5223.6 0.261 -1 VMSQALKATF 10 38 556.2943839406294 1110.5742149480586 2 556.2959594726562 MULTI HCD FTMS 0 0 0 8158 24973.02734375 0.08379188601474044 16 -0.4275970458984375 8 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 7.101721422024254 0.4377131641736035 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3943 0 0 945.4954165855571 0 945.4954165855571 0 1.672268755754656 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3943 + + 4 + NaN NaN 98535.5 NaN 5711 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8167 43.316 NaN 112810 35 0 15378 0.261 -1 SANLEEVTM 9 45 505.229047713681 1008.443542494162 2 505.2286376953125 MULTI HCD FTMS 0 0 0 8158 24301.41796875 0.03938421266355447 25 -0.6683464050292969 9 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 8.155526934196011 0.2891920862272901 2 EV[{M(Oxidation (M))|F}T] 4 -1 22.945 0 0 2.2753 0 0 514.238573142775 0 514.238573142775 0 20.18110275043508 0 0 0 0.8252574989159953 0 0 0 EV[{M(Oxidation (M))|F}T] 2.2753 + + 14 NaN NaN 102142.1 NaN 5712 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8168 43.32 NaN 77357 35 0 7266.6 0.261 + 23684 RQKRRRRKHK 10 37 483.6468713850751 1447.9187847554253 3 483.646728515625 MULTI HCD FTMS 0 0 0 8158 32602.078125 1 0 0 10 Unmodified _RQKRRRRKHK_ REV__ENSG00000107404|ENST00000378888|DVL1;REV__nc|ENSG00000107404|O14640-2|DVL1 0 0.4753037046562868 2 N 1 -1 6.9897 0 0 0.48274 0 0 100.08959859791396 1230.7732679753915 1330.8628665733054 0 0 0 0 0 0 0 0 0 N 0.48274 - 3 + NaN NaN 100657.1 NaN 5713 2453 8158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8170 43.325 NaN 342840 35 0 66810 0.326 + 24539 RYLEQLHQL 9 53 600.3303215263323 1198.6460901194646 2 600.330322265625 MULTI HCD FTMS 0 0 0 8169 169881.15625 0.1905027583701657 5 -0.13486862182617188 1 Unmodified _RYLEQLHQL_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 42.312485326615175 0.05472917415473307 2 {I|L}E[YR]Q{I|L}HQ{I|L} 9 4 + 69.307 0 0 5.7821 5.7821 87.222 0 0 0 48.954875462954845 6.413187455970544 6.413187455970544 8.979400086720375 0 2.8494850021680094 0 0.5 1.1989700043360187 {I|L}E[YR]Q{I|L}HQ{I|L};{I|L}[YR]EQ{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};{I|L}E[YR][AG]{I|L}HQ{I|L};[VP][HV]EQ{I|L}HQ{I|L};{I|L}[YR]E[AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR][AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}H[AG]{I|L};[VP][HV]EQ{I|L}H[AG]{I|L};[VP][HV]E[AG]{I|L}HQ{I|L} 5.7821;5.033;5.0149;5.0139;4.9746;4.2648;4.2467;4.2467;4.21;4.21 -;-;-;-;-;-;-;-;-;- 398 + NaN NaN 133287.1 NaN 5714 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8171 43.329 NaN 375560 35 0 59809 0.261 + 5823 FPDAREQEI 9 61 552.7695674698707 1103.5245820065413 2 552.76953125 MULTI HCD FTMS 0 0 0 8169 195255.046875 0.7973885307277303 -4 0.12857437133789062 2 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 49.52724829834842 0.03223213920720493 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 70.256 0 0 6.3665 6.3665 87.177 0 0 0 12.789230860337994 26.336032961080704 12.789230860337994 6.505149978319906 0 1.3182503180159344 2 0.4247425010840047 0.3494850021680094 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]AR{M(Oxidation (M))|F}EQ{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E;[DP]AR{M(Oxidation (M))|F}EQE{I|L};[DP]AR{M(Oxidation (M))|F}E[AG]{I|L}E 6.3665;5.777;5.5321;4.9426;3.9;3.607;3.3105;3.0656;3.0175;2.7725 -;+;-;-;-;-;-;-;-;- + 693 NaN NaN 146886.2 NaN 5715 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8172 43.333 NaN 327800 35 0 47723 0.261 -1 MPSGEFARI 9 65 512.2498079908211 1022.4850630484422 2 512.7327880859375 MULTI HCD FTMS 0 0 0 8169 4039.78955078125 0.1718713269427209 5 -0.13486862182617188 3 Oxidation (M) _M(Oxidation (M))PSGEFARI_ ENSG00000132646|ENST00000379143|PCNA 13.90604991867851 0.24021115267848145 2 {I|L}{NN|[MP]|[D{I|L}]|[EV]} 3 -1 18.952 0 0 1.8536 0 0 663.2799676888703 0 663.2799676888703 0 0.24104976468614225 0 0 0 0 0 0.8494850021680094 0 {I|L}{NN|[MP]|[D{I|L}]|[EV]} 1.8536 - 55 + NaN NaN 128369.2 NaN 5716 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8173 43.336 NaN 323150 35 0 28727 0.261 + 13365 KYMTAVVKL 9 73 526.8124469231279 1051.6103409130558 2 526.8124389648438 MULTI HCD FTMS 0 0 0 8169 112003.1484375 0.39612121034616526 4 -0.105255126953125 4 Unmodified _KYMTAVVKL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 33.4449034751529 0.0954363425218424 2 VQ{M(Oxidation (M))|F} 3 8 33.188 0 0 3.1559 0 0 659.4380781342358 0 659.4380781342358 0 10.440228147639203 0 0 0 0 0 0 0.6989700043360187 VQ{M(Oxidation (M))|F} 3.1559 - 138 + NaN NaN 129782.8 NaN 5717 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8174 43.339 NaN 142820 35 0 9770.4 0.261 + -1 GGPSQCMQL 9 52 497.21047384936566 992.4063947655313 2 497.2104797363281 MULTI HCD FTMS 0 0 0 8169 66090.046875 0.8745372885447288 -1 0.036281585693359375 5 Carbamidomethyl (C),Oxidation (M) _GGPSQC(Carbamidomethyl (C))M(Oxidation (M))QL_ REV__ENSG00000140326|ENST00000356231|CDAN1;REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 9.38312468134398 0.279288223203164 2 NPDK[QT]D 7 -1 35.895 0 0 3.617 0 0 0 191.04616724185783 191.04616724185783 9.92615720758863 0 0 0 0 1.1549471895720984 0 0.8807196863200843 0 NPDK[QT]D 3.617 - 51 + NaN NaN 112218 NaN 5718 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8175 43.343 NaN 266210 35 0 22179 0.261 + 2002 DAVQREYQL 9 77 561.2821937893407 1120.5498346454813 2 560.7764892578125 MULTI HCD FTMS 0 0 0 8169 28847.0234375 0.4968263971101763 -4 0.12857437133789062 6 Unmodified _DAVQREYQL_ ENSG00000080986|ENST00000261597|NDC80 22.65808497894818 0.16459551161911185 2 {M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 8 27.74 0 0 2.4755 0 0 168.16367849489376 0 168.16367849489376 0 7.298960678600604 0 0 0 0 0 0.3054621874040891 0.3494850021680094 {M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4755 - 377 + NaN NaN 123946.6 NaN 5719 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8176 43.346 NaN 340990 35 0 52817 0.261 + 21417 PVRPAATFP 9 70 478.27158827058304 954.5286236079661 2 478.2714538574219 MULTI HCD FTMS 0 0 0 8169 91911.921875 0.2691703639844639 -7 0.2142181396484375 7 Unmodified _PVRPAATFP_ ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2 10.823927491677226 0.26684000660059787 2 VP[NS]VVA 7 7 44.979 0 0 4.7122 0 0 0 285.1319674127563 285.1319674127563 12.795000083553205 0 0 0 0 0.3252574989159953 1.3010299956639813 0 0 VP[NS]VVA 4.7122 - 253 + NaN NaN 137723.9 NaN 5720 2454 8169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8178 43.351 NaN 737570 35 0 131410 0.327 + 24178 RYFDPANGKF 10 62 405.5366247218027 1213.5880447656082 3 405.53656005859375 MULTI HCD FTMS 0 0 0 8177 274789.25 0.3669413075416115 4 -0.108551025390625 1 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 53.40400417844725 0.06540992187319636 2 PAN[KG]{M(Oxidation (M))|F} 6 4 55.763 0 0 4.5949 0 0 581.2593351826897 0 581.2593351826897 0 41.07000627676548 0 0 0 2 0 0 1.1861818737241734 + PAN[KG]{M(Oxidation (M))|F} 4.5949 + + 290 + NaN NaN 188620.7 NaN 5721 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8179 43.356 NaN 382650 35 0 92752 0.261 + 25284 SAVVHEYAL 9 62 494.75847780991165 987.5024026866233 2 494.75848388671875 MULTI HCD FTMS 0 0 0 8177 247331.359375 0.26211120403857596 -4 0.12528610229492188 2 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 43.85829265575387 0.04763305254408404 2 SA{I|L} 3 6 36.114 0 0 3.6571 0 0 698.3387928693375 0 698.3387928693375 0 9.916440611282624 0 0 0 0.5 0 0.7302046884880937 0 SA{I|L} 3.6571 - 32 NaN NaN 140683.1 NaN 5722 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8180 43.359 NaN 178870 35 0 23413 0.261 + 34420 YPESESIMM 9 41 559.7224742459309 1117.4303955586618 2 559.7225341796875 MULTI HCD FTMS 0 0 0 8177 85929.15625 0.6835357292716928 -5 0.1548919677734375 3 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 64.23631603340823 0.01165516075559909 2 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 70.182 0 0 6.2807 0 0 389.1591053693375 0 389.1591053693375 0 61.59887825920684 0 0 0 2 0 1.2302046884880937 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.2807 + + 131 NaN NaN 103840.9 NaN 5723 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8181 43.362 NaN 373310 35 0 52148 0.261 + 24665 RYLSPKYIKMF 11 70 487.93560805191515 1460.7849947559455 3 487.935546875 MULTI HCD FTMS 0 0 0 8177 105107.7265625 0.2570248904255179 -6 0.18785858154296875 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 61.16457814134879 0.035572029071956085 2 [KP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 4 [KP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P + + 49.078 5.9518 0.96568 3.3597 3.3597 60.339 0 0 0 0 42.088264573690125 0 0 0 2.094187677400525 0 0 0 [KP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3597 - 196 + NaN NaN 137482.8 NaN 5724 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8182 43.366 NaN 132340 35 0 25766 0.261 + 4404 EYEEMLLDDF 10 42 435.1836309738161 1302.5290635216484 3 435.1837158203125 MULTI HCD FTMS 0 0 0 8177 37100.76171875 0.282812597146348 5 -0.12488174438476562 5 Unmodified _EYEEMLLDDF_ tr|U7T3B6|U7T3B6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00341PE=4SV=1 1.9063754702782614 0.46521295622613185 2 {M(Oxidation (M))|F} 1 9 16.99 0 0 1.3044 0 0 1137.450341453092 0 1137.450341453092 0 16.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3044 + + 2 + NaN NaN 112625.9 NaN 5725 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8183 43.369 NaN 84357 35 0 8140.6 0.261 + 11624 IYTVTMRII 9 44 555.322797500307 1108.631042067414 2 555.824462890625 MULTI HCD FTMS 0 0 0 8177 20698.951171875 0.42466185692228614 -3 0.09234619140625 6 Unmodified _IYTVTMRII_ tr|U7T0H4|U7T0H4_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00943PE=3SV=1 14.838274106304384 0.23215694253501695 2 KY 2 8 18.583 0 0 1.6763 0 0 0 814.4462984674436 814.4462984674436 0.6246936830414995 0 0 0 0 0 0 0 0 KY 1.6763 - 16 + NaN NaN 106252.5 NaN 5726 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8184 43.372 NaN 108090 35 0 19489 0.261 -1 LYNRTMVQL 9 56 577.3054459713474 1152.5963390094946 2 577.3055419921875 MULTI HCD FTMS 0 0 0 8177 37637.24609375 0.5648579116460872 2 -0.055950164794921875 7 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 12.240655878213236 0.2545997876781172 2 VQ{I|L} 3 -1 26.198 0 0 2.2729 0 0 794.3739878573268 0 794.3739878573268 0 20.713337517843655 0 0 0 0 0 0 0 VQ{I|L} 2.2729 + + 17 NaN NaN 118431.8 NaN 5727 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8185 43.376 NaN 122850 35 0 13556 0.261 + 28345 TPDEDDHLL 9 59 527.7380796603095 1053.461606387419 2 528.2398681640625 MULTI HCD FTMS 0 0 0 8177 14244.87109375 0.21810208939041723 4 -0.108551025390625 8 Unmodified _TPDEDDHLL_ BCL11B|p.V274Wfs*7|1|0.32|ENSG00000127152|chr14:99176016-99176016|C/-|frameshift_variant;ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B 15.847184025352803 0.2234401846867398 2 [Y{I|L}][PA]{[C(Carbamidomethyl (C))G]|[NC]}VQ{M(Oxidation (M))|F} 9 9 + 30.128 0 0 2.8599 2.8599 86.678 0 0 0 7.508943624335561 8.952424927286845 7.508943624335561 14.264771768807593 0 0.3807196863200844 1.6989700043360187 0 0 [Y{I|L}][PA]{[C(Carbamidomethyl (C))G]|[NC]}VQ{M(Oxidation (M))|F};[Y{I|L}][HV][{M(Oxidation (M))|F}T]Q{M(Oxidation (M))|F} 2.8599;1.5059 -;- 77 NaN NaN 98690.9 NaN 5728 2455 8177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8187 43.381 NaN 2589600 35 0 837510 0.327 + 24826 RYPSLWRRL 9 104 416.2436918347977 1245.7092461045931 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8186 1162028.5 0.8446774721429549 -5 0.154937744140625 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 70.92866715596459 0.008787713425443074 2 RY[PS]{I|L}WR{I|L}R 9 2 + 68.324 0 0 5.4848 5.4848 84.927 0 0 0 36.241436528314566 16.478174818886373 16.478174818886373 4.476212463643421 0 2.4177353201839438 1 0 1.305462187404089 RY[PS]{I|L}WR{I|L}R;RY[{I|L}P]SWR{I|L}R;RY[PS]{I|L}{I|L}[WR]R;RY[{I|L}P]S{I|L}[WR]R;{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SWR{I|L}R;R{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SWR{I|L}R;{I|L}R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}[WR]R;R{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}[WR]R 5.4848;5.1254;4.7572;4.3979;4.275;3.6341;3.5475;2.9065 -;-;-;-;-;-;-;- 1288 + NaN NaN 486415.1 NaN 5729 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8188 43.385 NaN 1342000 35 0 408060 0.261 + 8156 GPHSPDPLL 9 77 466.7455438315552 931.4765347299104 2 466.7452697753906 MULTI HCD FTMS 0 0 0 8186 842452.6875 0.7968494892605495 2 -0.049285888671875 2 Unmodified _GPHSPDPLL_ ENSG00000179604|ENST00000335793|CDC42EP4;nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 64.23631603340823 0.01165516075559909 2 SPDP{I|L}{I|L} 6 3 55.961 0 0 6.0078 0 0 291.13316542793126 0 291.13316542793126 0 27.443967175173576 0 0 0 1.6307196863200843 0 1.1307196863200843 0 + SPDP{I|L}{I|L} 6.0078 + + 273 NaN NaN 292048.4 NaN 5730 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8189 43.389 NaN 713840 35 0 78051 0.261 + 19368 NPDPDAETL 9 62 486.21961321028635 970.4246734873727 2 486.2193908691406 MULTI HCD FTMS 0 0 0 8186 397147.0625 0.8767111664156875 2 -0.049285888671875 3 Unmodified _NPDPDAETL_ ENSG00000264230|ENST00000619162|ANXA8L1;ENSG00000265190|ENST00000585281|ANXA8;nc|ENSG00000264230|Q5VT79-2|ANXA8L1;nc|ENSG00000276850|P13928-2|ANXA8 89.40071534611396 0.0045416704840156395 2 [NP]D[DP]AET{I|L} 9 0 + 60.741 0 0 6.2592 6.2592 86.152 0 0 0 4.259687322722812 16.478174818886373 4.259687322722812 4.259687322722812 0 1.7302046884880937 0 0.3494850021680094 1.1861818737241734 + + [NP]D[DP]AET{I|L};[DP]N[DP]AET{I|L};[{I|L}T]EA[DP]DPN;[DP]GG[DP]AET{I|L};[{I|L}T]ED[PA]DPN;[{I|L}T]{M(Oxidation (M))|F}A[C(Carbamidomethyl (C))M][QT] 6.2592;5.8203;4.2717;4.0867;3.6513;1.1648 +;-;-;-;-;- + 271 NaN NaN 187997.5 NaN 5731 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8190 43.392 NaN 156860 35 0 39914 0.261 + 9704 HVTQEDFEM 9 43 568.2399019526217 1134.4652509720433 2 568.2398681640625 MULTI HCD FTMS 0 0 0 8186 74400.3828125 0.877940593102829 -1 0.029651641845703125 4 Unmodified _HVTQEDFEM_ ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5 34.93206674587334 0.08860942999206235 2 [DP][RP]ED{M(Oxidation (M))|F}EM 9 4 + 53.592 0 0 4.724 4.724 85.397 0 0 0 1.14393726401687 48.107887415777526 1.14393726401687 8.454387282529794 0 1.1747425010840047 0 0.4247425010840047 0.3494850021680094 [DP][RP]ED{M(Oxidation (M))|F}EM;{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}EM;M{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}EM;[DP][RD][EP]{M(Oxidation (M))|F}EM 4.724;3.9788;3.5858;2.6366 -;-;-;- 65 NaN NaN 113874.1 NaN 5732 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8191 43.395 NaN 329380 35 0 43789 0.261 + 12369 KPAADADLQL 10 56 521.2825063802015 1040.550459827203 2 521.2702026367188 MULTI HCD FTMS 0 0 0 8186 34197.4921875 0.3765307683963814 -3 0.09225082397460938 5 Unmodified _KPAADADLQL_ ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L 21.590151480376914 0.30916502439568466 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S 4 8 26.031 0 0 2.5016 0 0 0 603.2802828424436 603.2802828424436 -1.5063752461539082 0 -1.5063752461539082 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S 2.5016 - 105 + NaN NaN 132411.5 NaN 5733 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8192 43.399 NaN 92151 35 0 16682 0.261 + 23997 RVYIGRLSY 9 41 563.8218739767543 1125.6291950203085 2 563.8218383789062 MULTI HCD FTMS 0 0 0 8186 50599.66015625 0.833611482416308 -2 0.05596923828125 6 Unmodified _RVYIGRLSY_ ENSG00000116350|ENST00000373795|SRSF4;ENSG00000124193|ENST00000244020|SRSF6;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6 12.240655878213236 0.2545997876781172 2 RVY 3 6 17.792 0 0 1.5806 0 0 0 704.3829439752561 704.3829439752561 7.870156338638596 0 0 0 0 0 0 0 0 + RVY 1.5806 + + 15 + NaN NaN 122001.7 NaN 5734 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8193 43.402 NaN 135940 35 0 19784 0.261 + 28880 TVWKPRPV 8 48 491.7958168725387 981.5770808118774 2 491.79534912109375 MULTI HCD FTMS 0 0 0 8186 38154.66015625 0.9961050547095358 -8 0.24717330932617188 7 Unmodified _TVWKPRPV_ ENST00000552109.5_1_12:42554393-42631425:-|nuORF 2.0597508629832335 0.5389364538378849 2 M 1 8 9.6041 0 0 0.97844 0 0 283.1821355987899 564.3281489554479 847.5102845542378 0 0 0 0 0 0.5 0 0 0 M 0.97844 - 3 + NaN NaN 105120 NaN 5735 2456 8186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8195 43.407 NaN 779630 35 0 261780 0.327 + 23395 RLDWPPHARL 10 73 420.9037926393148 1259.6895485181444 3 420.9033203125 MULTI HCD FTMS 0 0 0 8194 256411.984375 0.6482842106069883 -4 0.11854934692382812 1 Unmodified _RLDWPPHARL_ ENST00000531072.1_1_11:64808545-64809015:+|nuORF 10.315234532428624 0.4146267933501748 2 {I|L}R 2 8 24.776 0 0 1.9669 0 0 0 987.4808983283189 987.4808983283189 2.7077065471276924 0 0 0 0 0 0 0 0.3807196863200844 {I|L}R 1.9669 - 110 + NaN NaN 201402.1 NaN 5736 2457 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8196 43.411 NaN 246300 35 0 78970 0.261 + 24174 RYFDPANGKF 10 37 607.8012916224915 1213.5880303117829 2 607.8013916015625 MULTI HCD FTMS 0 0 0 8194 115524.359375 0.19371237723525295 6 -0.15108489990234375 2 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 21.590151480376914 0.30916502439568466 2 M[PA]NGK{M(Oxidation (M))|F} 7 4 40.534 0 0 3.34 0 0 450.22239882636876 0 450.22239882636876 0 33.5438040893024 0 0 0 0.5 0 0 0.3807196863200844 M[PA]NGK{M(Oxidation (M))|F} 3.34 - 73 NaN NaN 120485.9 NaN 5737 2457 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8197 43.415 NaN 649690 35 0 98440 0.261 + 24100 RYALQMEQL 9 87 584.2948338580441 1166.575114782888 2 584.2947998046875 MULTI HCD FTMS 0 0 0 8194 224466.703125 0.6183642957349261 -3 0.08226776123046875 3 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 93.93812099017352 0.0044227730261779084 2 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 81.991 0 0 7.0284 7.0284 90.324 0 0 0 5.6424927368725974 52.80537307494454 5.6424927368725974 9.208187539523749 0 2.31295299324845 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]{M(Oxidation (M))|F}Q{I|L}A{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L} 7.0284;6.239;6.239;5.4659;5.4534;4.8147;4.6804;4.6804;4.5027;4.0254 +;-;-;-;-;-;-;-;-;- + 1252 NaN NaN 186395.6 NaN 5738 2457 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8198 43.418 NaN 508220 35 0 83272 0.261 + 2003 DAVQREYQL 9 81 561.2821937893407 1120.5498346454813 2 561.281982421875 MULTI HCD FTMS 0 0 0 8194 153053.546875 0.7180004730753496 -1 0.02629852294921875 4 Unmodified _DAVQREYQL_ ENSG00000080986|ENST00000261597|NDC80 59.05245873256422 0.018907022117377846 2 {[DA]|[EG]}VQREYQ{I|L} 9 0 + 62.335 0 0 5.5629 5.5629 87.806 0 0 0 5.6424927368725974 54.887372032135886 5.6424927368725974 9.208187539523749 0 2.079689690656103 0 0 0.4247425010840047 + + {[DA]|[EG]}VQREYQ{I|L};{[DA]|[EG]}VQREY[AG]{I|L};{[DA]|[EG]}V[AG]REYQ{I|L};{[DA]|[EG]}V[AG]REY[AG]{I|L};[Q{I|L}][DG]REYQ{I|L};{[QN]|[E{I|L}]|[KN]}[NG]REYQ{I|L};[Q{I|L}][DG]REY[AG]{I|L};{[DA]|[EG]}V[HD]{I|L}[NP]Q{I|L};{[QN]|[E{I|L}]|[KN]}[NG]REY[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[NG][VG]EYQ{I|L} 5.5629;4.7411;4.7411;3.9232;3.708;3.51;2.8862;2.7355;2.6883;2.6883 +;-;-;-;-;-;-;-;-;- + 650 NaN NaN 159570.3 NaN 5739 2457 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8199 43.422 NaN 221110 35 0 24772 0.261 -1 NLCRDVMQ 8 60 526.2375152095378 1050.4604774858756 2 526.7395629882812 MULTI HCD FTMS 0 0 0 8194 63862.09375 0.5651069277956964 5 -0.12481307983398438 5 Carbamidomethyl (C),Oxidation (M) _NLC(Carbamidomethyl (C))RDVM(Oxidation (M))Q_ ENSG00000197647|ENST00000550507|ZNF433;nc|ENSG00000197647|Q8N7K0|ZNF433;ZNF433|p.E413*|1|0.33|ENSG00000197647|chr19:12015630-12015631|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VQ{M(Oxidation (M))|F} 3 -1 33.333 0 0 3.1731 0 0 658.2879345140346 0 658.2879345140346 0 7.441942306240378 0 0 0 0 0 0 0.7134679910804405 VQ{M(Oxidation (M))|F} 3.1731 - 125 + NaN NaN 127416.2 NaN 5740 2457 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8200 43.425 NaN 61519 35 0 7609.5 0.261 -1 RADQFEYVM 9 38 587.7634545185698 1173.5123561039395 2 587.7638549804688 MULTI HCD FTMS 0 0 0 8194 21408.943359375 0.6996720763578123 -16 0.4447021484375 6 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 2 DYV{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.5737 0 0 631.3246937482437 0 631.3246937482437 0 31.480625354554377 0 0 0 1 0 0 0 DYV{M(Oxidation (M))|F} 3.5737 - 34 NaN NaN 94085.1 NaN 5741 2457 8194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8202 43.43 NaN 944660 35 0 82454 0.327 + 20272 NYLSHHLTI 9 89 549.2905984047198 1096.5666438762396 2 549.29052734375 MULTI HCD FTMS 0 0 0 8201 429621.6875 0.8302515612781165 2 -0.0459442138671875 1 Unmodified _NYLSHHLTI_ ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;nc|ENSG00000172239|Q9H074-2|PAIP1;nc|ENSG00000172239|Q9H074-3|PAIP1;PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant 160.51597146486608 8.986712039288196E-09 2 [YN]{I|L}SHH{I|L}T 8 1 71.868 0 0 6.5539 0 0 0 128.07543748475806 128.07543748475806 45.94716531931181 0 0 0 0 1.8424778212679485 2 0.9436726795685343 1.1610892374447828 + [YN]{I|L}SHH{I|L}T 6.5539 + + 1236 NaN NaN 243791.9 NaN 5742 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8203 43.434 NaN 553850 35 0 93930 0.261 + 21776 QAHLEVQQL 9 63 533.2880311333489 1064.5615093334977 2 533.2880249023438 MULTI HCD FTMS 0 0 0 8201 279619.71875 0.19119988269661373 6 -0.15436553955078125 2 Unmodified _QAHLEVQQL_ ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2 103.41943736471063 0.004016698775839292 2 [Q{I|L}]E[HA]VQQ{I|L} 9 4 + 81.29 0 0 7.636 7.636 87.611 0 0 0 1.7609125905568135 16.478174818886373 1.7609125905568135 1.7609125905568135 0 1.25 0 1.392159058960253 1.5994850021680094 [Q{I|L}]E[HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQQ{I|L};[Q{I|L}]E[HA]V[AG]Q{I|L};[Q{I|L}]E[HA]VQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[AG][HA]VQQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]V[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}Q[HA]VQ[AG]{I|L};[Q{I|L}][HA]EVQQ{I|L};[Q{I|L}]EV[HA]QQ{I|L};{[QN]|[E{I|L}]|[KN]}QV[HA]QQ{I|L} 7.636;7.4706;6.7711;6.7711;6.6057;6.6057;6.6057;6.578;6.0112;5.8458 -;-;-;-;-;-;-;-;-;- 670 NaN NaN 163870.8 NaN 5743 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8204 43.438 NaN 164320 35 0 27195 0.261 + 1688 CFSSSREVN 9 48 514.7261831582505 NaN 0 514.7379760742188 PEAK HCD FTMS 0 0 0 8201 6741.6513671875 0.7963232180476141 -1 0.02298736572265625 3 Unmodified _CFSSSREVN_ ENST00000366769.7_1_1:227505320-227505512:-|nuORF 8.155526934196011 0.2557262968844962 2 SS 2 7 14.776 0 0 1.4382 0 0 250.0725012906825 600.2822359674436 850.3547372581261 0 0 0 0 0 0 0 0.3807196863200844 0 + SS 1.4382 + + 9 + NaN NaN 105187.5 NaN 5744 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8205 43.441 NaN 357110 35 0 44059 0.261 + 14161 LAGSPAGDLQL 11 59 521.2825063802015 1040.550459827203 2 521.2825317382812 MULTI HCD FTMS 0 0 0 8201 83647.8359375 0.9210027380824684 -1 0.02298736572265625 4 Unmodified _LAGSPAGDLQL_ REV__ENSG00000179044|ENST00000314586|EXOC3L1 19.361941925380144 0.2883811769592959 2 {I|L}MK 3 -1 38.672 0 0 3.7165 0 0 0 665.2893160455686 665.2893160455686 18.494850021680094 0 0 0 0 0 2 0 0 {I|L}MK 3.7165 - 63 + NaN NaN 138311.4 NaN 5745 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8206 43.445 NaN 102260 35 0 7432 0.261 -1 NGVSYYINLC 10 36 601.7791241258609 1201.5436953185217 2 601.779052734375 MULTI HCD FTMS 0 0 0 8201 31556.02734375 0.5217717759419299 2 -0.0459442138671875 5 Carbamidomethyl (C) _NGVSYYINLC(Carbamidomethyl (C))_ ENSG00000197081|ENST00000356956|IGF2R 2.735195868890462 0.4608258780945842 2 KE 2 -1 7.0783 0 0 0.5891 0 0 148.1232374101217 793.262817137686 941.3860545478078 0 0 0 0 0 0 0 0 0 KE 0.5891 - 16 + NaN NaN 101446.1 NaN 5746 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8207 43.448 NaN 62073 35 0 6086.2 0.263 + 2083 DETLSGSEL 9 38 475.7192086633284 949.4238643934568 2 475.7193298339844 MULTI HCD FTMS 0 0 0 8201 28356.99609375 1 0 0 6 Unmodified _DETLSGSEL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 20.453626601364224 0.18364154288633264 2 E{I|L} 2 7 29.776 0 0 3.1362 0 0 689.287889549025 0 689.287889549025 0 24.291746928241125 0 0 0 0.5 0 0.3807196863200844 0 + E{I|L} 3.1362 + + 25 NaN NaN 88563.1 NaN 5747 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8208 43.451 NaN 72018 35 0 14023 0.261 -1 LAQAMETAL 9 37 482.2447030626609 962.4748531921218 2 482.24407958984375 MULTI HCD FTMS 0 0 0 8201 30160.859375 0.680766609445163 -2 0.049285888671875 7 Oxidation (M) _LAQAM(Oxidation (M))ETAL_ ENSG00000181191|ENST00000374571|PJA1;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2 18.1463463914782 0.20357593197100715 2 A{I|L} 2 -1 23.271 0 0 2.4178 0 0 760.3406519810032 0 760.3406519810032 0 11.052659518797938 0 0 0 0.3807196863200844 0 0 0 A{I|L} 2.4178 + + 7 NaN NaN 92879.2 NaN 5748 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8209 43.455 NaN 81282 35 0 12310 0.261 + 32724 WPTRLSRT 8 48 508.7850319854317 NaN 0 508.7850646972656 PEAK HCD FTMS 0 0 0 8201 4827.13720703125 0.10688235069238215 3 -0.08221054077148438 8 Unmodified _WPTRLSRT_ ENSG00000170476|ENST00000302125|MZB1;ENST00000417694.6_1_5:138723456-138724322:-|nuORF;ENST00000503481.5_1_5:138723456-138725442:-|nuORF;nc|ENSG00000170476|Q8WU39-3|MZB1 2.0597508629832335 0.38822285293237185 2 A 1 8 0.088644 0 0 0.0087286 0 0 794.6019415569979 146.88987146549064 941.4918130224885 0 0 0 0 0 0 0 0 0 A 0.0087286 - 2 + NaN NaN 91434.8 NaN 5749 2458 8201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8211 43.46 NaN 1237800 35 0 398190 0.327 + 13400 KYPDRVPVI 9 70 543.8189755008225 1085.6233980684449 2 543.8189697265625 MULTI HCD FTMS 0 0 0 8210 771405.9375 0.7075876357029517 -4 0.108551025390625 1 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 83.42873516780209 0.004742894019233849 2 KYPDRV 6 3 63.077 0 0 5.8102 0 0 0 324.19252418275926 324.19252418275926 15.021765682806112 0 0 0 0 2.1307196863200843 0 0.23965182871044374 0.2742275032520141 + KYPDRV 5.8102 + + 329 + NaN NaN 280215.7 NaN 5750 2459 8210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8212 43.464 NaN 93409 35 0 22301 0.261 + 23300 RIARPVYCRL 10 34 623.8621812402573 1245.7098095473145 2 623.862548828125 MULTI HCD FTMS 0 0 0 8210 30029.0859375 0.858792996087563 -5 0.13486862182617188 2 Unmodified _RIARPVYCRL_ REV__ENST00000262395.9_1_17:27076744-27076957:+|nuORF 3.5870582119611467 0.4563168352879256 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 94343.2 NaN 5751 2459 8210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8213 43.468 NaN 77636 35 0 9777.9 0.261 + 33435 YGSRLDYFQ 9 39 574.7723339914191 1147.5301150496382 2 574.7716064453125 MULTI HCD FTMS 0 0 0 8210 20384.85546875 0.08580621078680849 12 -0.3124351501464844 3 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 3.2813086475875832 0.32614229037259 2 VS{[DS]|[MA]|[CV]|TT} 4 7 21.198 0 0 1.8473 0 0 741.3436756818375 0 741.3436756818375 0 21.197887582883936 0 0 0 0.5 0 0 0 VS{[DS]|[MA]|[CV]|TT} 1.8473 - 7 NaN NaN 96923.4 NaN 5752 2459 8210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8214 43.471 NaN 113230 35 0 14671 0.261 -1 SPVSDVSYM 9 41 500.7182169626478 999.4218809920956 2 500.7181701660156 MULTI HCD FTMS 0 0 0 8210 53233.21484375 0.7371350417771249 -2 0.052600860595703125 4 Oxidation (M) _SPVSDVSYM(Oxidation (M))_ ENSG00000131746|ENST00000254051|TNS4 39.957323273324995 0.06554068735427583 2 VSY{M(Oxidation (M))|F} 4 -1 52.18 0 0 5.2211 0 0 485.2120554079143 0 485.2120554079143 0 52.180475292681265 0 0 0 1.8252574989159953 0 0.3494850021680094 0 VSY{M(Oxidation (M))|F} 5.2211 + + 21 + NaN NaN 100404.4 NaN 5753 2459 8210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8216 43.476 NaN 683920 35 0 141960 0.327 + 30817 VPVRFPSGP 9 75 478.27158827058304 954.5286236079661 2 478.2713928222656 MULTI HCD FTMS 0 0 0 8215 295900.375 0.8665645328384053 -1 0.016330718994140625 1 Unmodified _VPVRFPSGP_ REV__ENSG00000128591|ENST00000325888|FLNC;REV__ENSG00000136068|ENST00000295956|FLNB;REV__nc|ENSG00000128591|Q14315-2|FLNC;REV__nc|ENSG00000136068|O75369-2|FLNB;REV__nc|ENSG00000136068|O75369-3|FLNB;REV__nc|ENSG00000136068|O75369-4|FLNB;REV__nc|ENSG00000136068|O75369-5|FLNB;REV__nc|ENSG00000136068|O75369-6|FLNB;REV__nc|ENSG00000136068|O75369-7|FLNB;REV__nc|ENSG00000136068|O75369-8|FLNB;REV__nc|ENSG00000136068|O75369-9|FLNB 24.020572477871973 0.15282392193088168 2 VPVYKR 6 -1 58.078 0 0 6.0845 0 0 0 209.05677210025627 209.05677210025627 14.418402966525576 0 0 0 0 1.5440228147639203 1.6989700043360187 0 0.3252574989159953 VPVYKR 6.0845 - 1032 + NaN NaN 188112 NaN 5754 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8217 43.48 NaN 368730 35 0 59255 0.261 + 5824 FPDAREQEI 9 62 552.7695674698707 1103.5245820065413 2 552.76953125 MULTI HCD FTMS 0 0 0 8215 204520.390625 0.8352266248397335 2 -0.055881500244140625 2 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 65.47368725323818 0.010552856507075443 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 71.067 0 0 6.44 6.44 86.101 0 0 0 17.88673012463569 18.46787486224656 17.88673012463569 3.450528104279016 0 1.242992819099939 1.6989700043360187 0.3807196863200844 0.6747425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}Q{M(Oxidation (M))|F}RADPE;[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};[DP]AR{M(Oxidation (M))|F}EQ{I|L}E;[DP]AR{M(Oxidation (M))|F}EQE{I|L};{[QN]|[E{I|L}]|[KN]}[AG]{M(Oxidation (M))|F}RADPE 6.44;6.1273;5.6055;5.2929;4.4046;4.3341;4.0214;3.9082;3.5955;3.5702 -;+;-;-;-;-;-;-;-;- + 1053 NaN NaN 156466.1 NaN 5755 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8218 43.484 NaN 230440 35 0 39058 0.264 + 24179 RYFDPANGKF 10 51 405.5366247218027 1213.5880447656082 3 405.53631591796875 MULTI HCD FTMS 0 0 0 8215 55065.921875 0.07353257586967732 9 -0.24011611938476562 3 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 22.65808497894818 0.29917593477267174 2 PAN[KG]{M(Oxidation (M))|F} 6 4 32.369 0 0 2.6672 0 0 581.2603230358332 0 581.2603230358332 0 27.931825014007217 0 0 0 1.5 0 0 0 + PAN[KG]{M(Oxidation (M))|F} 2.6672 + + 43 + NaN NaN 129261.1 NaN 5756 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8219 43.487 NaN 113120 35 0 20620 0.261 + 16315 LREKFEHIQ 9 30 600.3303215263323 1198.6460901194646 2 600.3301391601562 MULTI HCD FTMS 0 0 0 8215 57266.62890625 0.06421813348825314 11 -0.29610443115234375 4 Unmodified _LREKFEHIQ_ ENSG00000154760|ENST00000285013|SLFN13;nc|ENSG00000154760|Q68D06-2|SLFN13 20.41453444215458 0.18397929046831515 2 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L} 9 7 + 49.359 0 0 4.1179 4.1179 85.733 0 0 0 2.1522748654137303 38.561603143133496 2.1522748654137303 9.208187539523749 0 1.3494850021680094 0 0 0 {[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR][AG]{I|L}HQ{I|L};{[QN]|[E{I|L}]|[KN]}[YR]Q{I|L}H[AG]{I|L} 4.1179;3.3496;3.3496 -;-;- 45 NaN NaN 113269.2 NaN 5757 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8220 43.491 NaN 162200 35 0 17836 0.261 + 4323 EVTDVDSVVGR 11 48 588.2987479876325 1174.582943042065 2 588.298828125 MULTI HCD FTMS 0 0 0 8215 58966.31640625 0.7885092391961261 -3 0.06893157958984375 5 Unmodified _EVTDVDSVVGR_ DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8 39.212999716063884 0.1420185906124365 2 {NN|[MP]|[D{I|L}]|[EV]}TDVDSVV{[NV]|[RG]} 11 0 + 52.828 0 0 4.4976 4.4976 90.715 0 0 0 43.619715848066974 7.367585652254178 7.367585652254178 47.38040917931352 0 0.6989700043360187 0 0.28872548999643577 0 + + {NN|[MP]|[D{I|L}]|[EV]}TDVDSVV{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}[W{M(Oxidation (M))|F}][WP]V{[NV]|[RG]} 4.4976;0.46378 +;- + 87 + NaN NaN 109086.9 NaN 5758 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8221 43.494 NaN 51821 35 0 5853.9 0.261 + 23919 RTLRDIETF 9 28 575.8143235990963 1149.6140942649924 2 575.8137817382812 MULTI HCD FTMS 0 0 0 8215 21562.248046875 0.6442306255879257 1 -0.036266326904296875 6 Unmodified _RTLRDIETF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 1.4819007175156935 0.3397831423917744 2 S 1 9 5.4846 0 0 0.47708 0 0 221.16736123913 838.3945406549436 1059.5619018940736 0 0 0 0 0 0 0 0 0 S 0.47708 - 1 + NaN NaN 104050.9 NaN 5759 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8222 43.497 NaN 73034 35 0 3948.4 0.261 -1 TSCHTACTL 9 41 497.21047384936566 992.4063947655313 2 497.21051025390625 MULTI HCD FTMS 0 0 0 8215 36874 0.4879356196976268 5 -0.13145828247070312 7 Carbamidomethyl (C) _TSCHTAC(Carbamidomethyl (C))TL_ ENSG00000140545|ENST00000268150|MFGE8;ENST00000559259.1_1_15:89448967-89449934:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8 6.723162845929126 0.3000504726104499 2 T{I|L} 2 -1 21.198 0 0 2.136 0 0 760.2634144513687 0 760.2634144513687 0 21.197887582883936 0 0 0 0.5 0 0 0 T{I|L} 2.136 + + 5 NaN NaN 96274 NaN 5760 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8223 43.501 NaN 94554 35 0 18113 0.261 -1 PLTCTPTRWSF 11 45 455.8920037732911 1364.6541819200734 3 456.2265319824219 MULTI HCD FTMS 0 0 0 8215 17220.0390625 0.6840856470705077 1 -0.036266326904296875 8 Carbamidomethyl (C) _PLTC(Carbamidomethyl (C))TPTRWSF_ ENST00000377321.5_1_11:64574553-64575085:-|nuORF 6.234356020891411 0.3915788988406848 2 {M(Oxidation (M))|F}A[WK]S{M(Oxidation (M))|F} 6 -1 47.664 0 0 3.4927 0 0 580.2427235334 0 580.2427235334 0 40.67410004652736 0 0 0 1.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}A[WK]S{M(Oxidation (M))|F} 3.4927 - 17 NaN NaN 98950.3 NaN 5761 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8224 43.504 NaN 85546 35 0 8530.8 0.261 + -1 MHFGRDCSD 9 41 570.7134072490032 NaN 0 570.7141723632812 PEAK HCD FTMS 0 0 0 8215 16119.8095703125 0.7149678762922143 3 -0.0821533203125 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))HFGRDC(Carbamidomethyl (C))SD_ REV__ENSG00000083168|ENST00000265713|KAT6A;REV__ENSG00000156650|ENST00000287239|KAT6B;REV__KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;REV__nc|ENSG00000156650|Q8WYB5-2|KAT6B;REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B 1.844237919475145 0.28630992268396543 2 YG 2 -1 7.9588 0 0 0.6985 0 0 186.94425726968763 729.3572481744749 916.3015054441626 0 0 0 0 0 0 0 0 0 YG 0.6985 - 4 + NaN NaN 95616.2 NaN 5762 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8225 43.507 NaN 49531 35 0 4991.8 0.261 + -1 CYRRKGRKI 9 32 618.858642578125 NaN 0 618.858642578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRRKGRKI_ REV__ENSG00000054267|ENST00000264183|ARID4B;REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF;REV__nc|ENSG00000054267|Q4LE39-2|ARID4B;REV__nc|ENSG00000054267|Q4LE39-3|ARID4B;REV__nc|ENSG00000054267|Q4LE39-4|ARID4B 0.5247636613948944 0.2927039108006614 2 C 1 -1 2.4743 0 0 0.20023 0 0 637.5085685529313 492.1485994928344 1129.6571680457657 0 0 0 0 0 0 0 0 0 C 0.20023 + + 2 + NaN NaN 93642.8 NaN 5763 2460 8215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8227 43.512 NaN 958290 35 0 231040 0.327 + 25285 SAVVHEYAL 9 75 494.75847780991165 987.5024026866233 2 494.7584228515625 MULTI HCD FTMS 0 0 0 8226 749525.5625 0.7943151573703103 2 -0.045886993408203125 1 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 58.678817012210395 0.019429721296335044 2 V[MD]K[PG]A{I|L} 8 7 40.979 0 0 4.1498 0 0 158.06941420722814 0 158.06941420722814 0 20.66926379708436 0 0 0 1.8807196863200843 0 0.7302046884880937 0 V[MD]K[PG]A{I|L} 4.1498 - 340 NaN NaN 225493.6 NaN 5764 2461 8226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8228 43.517 NaN 1065000 35 0 168250 0.261 + 24666 RYLSPKYIKMF 11 92 487.93560805191515 1460.7849947559455 3 487.935546875 MULTI HCD FTMS 0 0 0 8226 408939.875 1 0 0 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 61.16457814134879 0.035572029071956085 2 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 94.746 0 0 6.486 6.486 93.816 0 0 0 18.237961250203057 64.7049999164468 18.237961250203057 45.89892921248608 0 2.6989700043360187 1.5228787452803376 2.1549471895720984 0 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]KQT[{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]R[Y{I|L}][QA]{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NP]TK[PA][W{I|L}]{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[AG]T[{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]K[VG]T[{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[K{I|L}]YQT[{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]K[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[K{I|L}]Y[AG]T[{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.486;3.3439;3.1308;2.7886;2.719;2.4169;2.4014;2.3367;1.7765 -;-;-;-;-;-;-;-;- 1304 NaN NaN 245162.8 NaN 5765 2461 8226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8229 43.52 NaN 440200 35 0 38765 0.261 + 22822 QYLPHVARL 9 86 548.8166722281508 1095.6187915231014 2 548.8168334960938 MULTI HCD FTMS 0 0 0 8226 117554.578125 0.924945066928416 2 -0.045886993408203125 3 Unmodified _QYLPHVARL_ ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 18.1463463914782 0.20357593197100715 2 [Y{I|L}]QPHVA[R{I|L}] 9 2 + 33.676 0 0 3.0737 3.0737 81.303 0 0 0 3.010299956639816 2.6884531229258037 2.6884531229258037 2.6884531229258037 0 0.3252574989159953 0 0 0 [Y{I|L}]QPHVA[R{I|L}];[Y{I|L}]QPHV{I|L}{[QV]|[N{I|L}]|[RA]|[KV]};[YQ]{I|L}PHVA[R{I|L}];[YQ]{I|L}PHV{I|L}{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}][AG]PHVA[R{I|L}];[Y{I|L}][AG]PHV{I|L}{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]{I|L}SK[TA]T{[TV]|[{I|L}S]};[Y{I|L}]{I|L}SK[TA]S[{I|L}T] 3.0737;2.8283;2.7989;2.5535;2.2332;1.9878;1.051;0.71511 -;-;+;-;-;-;-;- + 507 + NaN NaN 150472 NaN 5766 2461 8226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8230 43.524 NaN 139830 35 0 25173 0.261 + 8999 HPEEGDLDL 9 45 512.732739014932 1023.450925096664 2 512.7326049804688 MULTI HCD FTMS 0 0 0 8226 47239.62890625 0.03798277547703723 25 -0.6892356872558594 4 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 15.847184025352803 0.2234401846867398 2 {I|L}D{I|L} 3 6 31.198 0 0 3.0483 0 0 664.2448564086243 0 664.2448564086243 0 26.593793813122062 0 0 0 0.5 0 0 0 + {I|L}D{I|L} 3.0483 + + 7 NaN NaN 109864.5 NaN 5767 2461 8226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8231 43.527 NaN 42966 35 0 3437.3 0.261 + 30386 VLLLIIILLIT 11 24 618.9496459960938 NaN 0 618.9496459960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VLLLIIILLIT_ sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91862.4 NaN 5768 2461 8226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8233 43.532 NaN 2922000 35 0 926790 0.327 + 24827 RYPSLWRRL 9 120 416.2436918347977 1245.7092461045931 3 416.2437438964844 MULTI HCD FTMS 0 0 0 8232 1309139.625 0.9516124166723758 1 -0.026271820068359375 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 51.487983226225225 0.029489205318603332 2 [YR][PS]{I|L}WR{I|L}R 9 2 + 53.623 0 0 4.3046 4.3046 90.432 0 0 0 12.687388406848584 10.336970573880144 10.336970573880144 46.85683339975081 0 0.8807196863200843 0.958607314841775 0.6989700043360187 0.8609243748081781 [YR][PS]{I|L}WR{I|L}R;{I|L}R{I|L}[YN][RK]H{M(Oxidation (M))|F};[YR]R{I|L}AH{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VG] 4.3046;0.54319;0.31909 -;-;- 1716 NaN NaN 527849.6 NaN 5769 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8234 43.536 NaN 567800 35 0 82177 0.261 + 25627 SGPDPHLPL 9 64 466.7455438315552 931.4765347299104 2 466.7449035644531 MULTI HCD FTMS 0 0 0 8232 154995.859375 0.14660570642487114 8 -0.21387481689453125 2 Unmodified _SGPDPHLPL_ REV__ENST00000567040.5_1_16:30094959-30095061:+|nuORF 23.1484247019978 0.1603590852062899 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA[DP]VS 8 -1 39.601 0 0 4.2514 0 0 0 128.07239485902144 128.07239485902144 22.24423738776309 0 0 0 0 0 1.5228787452803376 1.3737125054200234 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SA[DP]VS 4.2514 - 241 NaN NaN 169171.9 NaN 5770 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8235 43.54 NaN 170310 35 0 17387 0.261 -1 KYMLKANLI 9 48 555.322797500307 1108.631042067414 2 555.32275390625 MULTI HCD FTMS 0 0 0 8232 39820.203125 0.5851891737983325 5 -0.13160324096679688 3 Oxidation (M) _KYM(Oxidation (M))LKANLI_ ENSG00000164134|ENST00000296543|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;nc|ENSG00000164134|Q9BXJ9-4|NAA15 3.944395688203298 0.32111559684428237 2 PETYQA[R{I|L}] 8 -1 42.384 0 0 3.823 0 0 132.1301123079249 0 132.1301123079249 0 25.929862658764264 0 0 0 0 0 0.4247425010840047 0 PETYQA[R{I|L}] 3.823 - 103 + NaN NaN 113267.9 NaN 5771 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8236 43.543 NaN 100900 35 0 10755 0.261 + 2004 DAYGSELVER 10 41 569.7733220079532 1137.5320910827063 2 569.7736206054688 MULTI HCD FTMS 0 0 0 8232 18377.90234375 0.42274465313366594 5 -0.13160324096679688 4 Unmodified _DAYGSELVER_ ENSG00000151726|ENST00000281455|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1 4.189502756095605 0.45312800054222196 2 WY 2 9 16.198 0 0 1.4239 0 0 0 785.3783078575406 785.3783078575406 5.110534548150907 0 0 0 0 0 0 0 0 WY 1.4239 - 43 + NaN NaN 107819 NaN 5772 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8237 43.546 NaN 51098 35 0 6204 0.261 + 34854 YRYQKLQK 8 36 563.8218739767543 1125.6291950203085 2 563.822021484375 MULTI HCD FTMS 0 0 0 8232 19558.041015625 0.3222117997205617 4 -0.1118621826171875 5 Unmodified _YRYQKLQK_ ENSG00000154997|ENST00000388975|SEPTIN14 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87142.8 NaN 5773 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8238 43.55 NaN 142340 35 0 20245 0.261 + 2449 DPYSDDPRL 9 46 539.2458147768014 NaN 0 539.2450561523438 PEAK HCD FTMS 0 0 0 8232 19225.349609375 0.652479382531553 1 -0.026271820068359375 6 Unmodified _DPYSDDPRL_ ENSG00000073350|ENST00000392550|LLGL2;ENSG00000131899|ENST00000316843|LLGL1;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;LLGL2|p.S495F|1|0.33|ENSG00000073350|chr17:75569228-75569228|C/T|missense_variant;nc|ENSG00000073350|Q6P1M3-2|LLGL2 16.149105407346934 0.21324626030841579 2 T 1 9 11.747 0 0 1.0913 0 0 591.1822900987214 381.22497819397637 972.4072682926978 0 0 0 0 0 0.5 0 0.3252574989159953 0 T 1.0913 - 8 + NaN NaN 107133.8 NaN 5774 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8239 43.553 NaN 94057 35 0 13576 0.261 + 380 AILRQWVP 8 47 491.7958168725387 981.5770808118774 2 491.7957763671875 MULTI HCD FTMS 0 0 0 8232 30732.822265625 0.8023428718513743 -2 0.055881500244140625 7 Unmodified _AILRQWVP_ ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.4242 0 0 816.5314092804306 0 816.5314092804306 0 8.91773141135175 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4242 - 2 + NaN NaN 94547.5 NaN 5775 2462 8232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8241 43.558 NaN 943340 35 0 275530 0.326 + -1 LRQREMQKR 9 84 420.9037926393148 1259.6895485181444 3 420.9033203125 MULTI HCD FTMS 0 0 0 8240 339479.625 0.8583034106097693 2 -0.049304962158203125 1 Oxidation (M) _LRQREM(Oxidation (M))QKR_ REV__ENSG00000186575|ENST00000338641|NF2;REV__nc|ENSG00000186575|P35240-2|NF2;REV__nc|ENSG00000186575|P35240-3|NF2;REV__nc|ENSG00000186575|P35240-4|NF2;REV__nc|ENSG00000186575|P35240-5|NF2;REV__nc|ENSG00000186575|P35240-6|NF2 10.150570793230772 0.27265765907388223 2 {I|L}[YG][WK]{I|L}T 7 -1 24.811 0 0 1.9696 0 0 0 395.18659387760005 395.18659387760005 0.3465880615922856 0 0 0 0 0.3807196863200844 0 0.6549471895720984 0.2614393726401688 {I|L}[YG][WK]{I|L}T 1.9696 - 148 + NaN NaN 226975.4 NaN 5776 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8242 43.563 NaN 447770 35 0 62633 0.261 + 24101 RYALQMEQL 9 75 584.2948338580441 1166.575114782888 2 584.2950439453125 MULTI HCD FTMS 0 0 0 8240 214793.265625 0.5917157626396089 3 -0.08559036254882812 2 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 93.93812099017352 0.0044227730261779084 2 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 79.982 0 0 6.8561 6.8561 89.39 0 0 0 5.642492736872583 45.01644875545445 5.642492736872583 9.208187539523735 0 2.1560383909227108 0 0 0.3807196863200844 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}Q{M(Oxidation (M))|F}EQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]{M(Oxidation (M))|F}Q{I|L}A{[MG]|[TS]}{I|L} 6.8561;6.0668;6.0668;5.2812;5.2741;4.4885;4.4885;3.7684;3.4771;3.4556 +;-;-;-;-;-;-;-;-;- + 748 NaN NaN 151762.6 NaN 5777 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8243 43.566 NaN 326530 35 0 55667 0.261 + 17757 MEEEAGQTSI 10 44 547.7369961677302 1093.4594394022604 2 547.7369384765625 MULTI HCD FTMS 0 0 0 8240 167261.921875 0.8754286874150722 -4 0.09848403930664062 3 Unmodified _MEEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 34.93206674587334 0.18938571726943593 2 SQTS{I|L} 5 6 60.138 0 0 5.4998 0 0 559.1938954084 0 559.1938954084 0 50.84605507340511 0 0 0 1.5 0 0.8807196863200843 0.28872548999643577 SQTS{I|L} 5.4998 - 53 NaN NaN 131728.7 NaN 5778 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8244 43.569 NaN 248720 35 0 34975 0.261 + -1 LCDPVNYLQ 9 69 561.2672262879012 NaN 0 561.2827758789062 PEAK HCD FTMS 0 0 0 8240 12691.7509765625 0.6390333236304131 -15 0.4245567321777344 4 Carbamidomethyl (C) _LC(Carbamidomethyl (C))DPVNYLQ_ REV__ENSG00000126804|ENST00000683701|ZBTB1;REV__nc|ENSG00000126804|Q9Y2K1-2|ZBTB1 11.640296217721598 0.23883959125015683 2 QYE{M(Oxidation (M))|F}Y 5 -1 27.435 0 0 2.4484 0 0 131.06462945903314 256.12942166544934 387.1940511244825 0 0 0 0 0 0 0 0 0.4247425010840047 QYE{M(Oxidation (M))|F}Y 2.4484 - 231 + NaN NaN 122091.3 NaN 5779 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8245 43.573 NaN 193560 35 0 28249 0.261 -1 LPDDPRQMTL 10 38 601.2976437003749 1200.5807344675497 2 601.2974243164062 MULTI HCD FTMS 0 0 0 8240 86948.71875 0.720175226929784 -10 0.2696342468261719 5 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 21.590151480376914 0.30916502439568466 2 {I|L}PDD 4 -1 44.993 0 0 3.7476 0 0 0 757.3668202939893 757.3668202939893 28.79493455131808 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {I|L}PDD 3.7476 + + 52 + NaN NaN 114178.6 NaN 5780 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8246 43.576 NaN 81052 35 0 24580 0.261 + 24175 RYFDPANGKF 10 21 607.8012916224915 1213.5880303117829 2 607.80126953125 MULTI HCD FTMS 0 0 0 8240 45375.734375 0.07608647580588788 12 -0.3164024353027344 6 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 6.630372943996041 0.44020808660041416 2 M[PA]NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7 4 22.491 0 0 1.8533 0 0 450.22471816230626 0 450.22471816230626 0 22.49114457050446 0 0 0 0.5 0 0 0 M[PA]NG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.8533 - 9 NaN NaN 90512.5 NaN 5781 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8247 43.579 NaN 105080 35 0 20791 0.261 -1 QFCMFEYPL 9 36 617.767118858846 1233.5196847844918 2 617.7669067382812 MULTI HCD FTMS 0 0 0 8240 25834.0234375 0.5275398771205261 -1 0.026271820068359375 7 Carbamidomethyl (C) _QFC(Carbamidomethyl (C))MFEYPL_ ENST00000561721.6_1_17:75089357-75138808:+|nuORF 6.2057823575117 0.30397260197431997 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 31.198 0 0 2.5292 0 0 842.3080311505875 0 842.3080311505875 0 14.744237387763093 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.5292 - 12 NaN NaN 101156.1 NaN 5782 2463 8240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8249 43.584 NaN 458010 35 0 57934 0.327 + 6799 FPSAPDVKA 9 69 466.2476435967855 NaN 0 466.2475891113281 PEAK HCD FTMS 0 0 0 8248 221753.828125 1 0 0 1 Unmodified _FPSAPDVKA_ ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP 76.82478488871298 0.004028098895544731 2 SV[DP]AS 6 6 36.292 0 0 3.9003 0 0 130.10355027775228 241.09800134830314 371.20155162605545 0 0 0 0 0 2.1549471895720984 0 1.3851518780601921 0 SV[DP]AS 3.9003 - 100 + NaN NaN 154289.6 NaN 5783 2464 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8250 43.589 NaN 179100 35 0 16118 0.261 -1 QMIEQIQF 8 67 526.7569143862402 NaN 0 526.73974609375 PEAK HCD FTMS 0 0 0 8248 10241.76953125 0.7069193022189868 -11 0.2959022521972656 2 Oxidation (M) _QM(Oxidation (M))IEQIQF_ ENSG00000101076|ENST00000316673|HNF4A;ENSG00000164749|ENST00000396423|HNF4G;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235-2|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000164749|Q14541-2|HNF4G;nc|ENSG00000164749|Q14541|HNF4G 16.942295170755138 0.3865212393897457 2 VQ 2 -1 15.217 0 0 1.4471 0 0 659.3269339887196 162.02268396549064 821.3496179542102 0 0 0 0 0 0 0 0 0.4247425010840047 VQ 1.4471 - 35 + NaN NaN 117224.8 NaN 5784 2464 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8251 43.592 NaN 251750 35 0 39416 0.261 + 14460 LETISHTLQ 9 48 521.2825063802015 1040.550459827203 2 521.2823486328125 MULTI HCD FTMS 0 0 0 8248 34647.27734375 0.3814831183981749 5 -0.13169479370117188 3 Unmodified _LETISHTLQ_ REV__ENSG00000181143|ENST00000397910|MUC16;REV__ENSG00000181143|ENST00000397910|MUC16;REV__ENSG00000181143|ENST00000397910|MUC16 9.38312468134398 0.279288223203164 2 {I|L}MKD 4 -1 42.256 0 0 4.0609 0 0 0 550.2754610650999 550.2754610650999 19.06804392152253 0 0 0 0 0 1.6989700043360187 0.5 0 {I|L}MKD 4.0609 - 85 + NaN NaN 126000.1 NaN 5785 2464 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8252 43.596 NaN 104080 35 0 11157 0.261 + -1 HHEHMMVM 8 59 550.2084139359631 1098.4022749387261 2 550.2083129882812 MULTI HCD FTMS 0 0 0 8248 32857.9296875 0.841558785096631 5 -0.13169479370117188 4 3 Oxidation (M) _HHEHM(Oxidation (M))M(Oxidation (M))VM(Oxidation (M))_ REV__ENSG00000145730|ENST00000438793|PAM;REV__ENST00000505372.1_1_5:102295723-102310166:+|nuORF;REV__nc|ENSG00000145730|P19021-2|PAM;REV__nc|ENSG00000145730|P19021-3|PAM;REV__nc|ENSG00000145730|P19021-4|PAM;REV__nc|ENSG00000145730|P19021-5|PAM;REV__nc|ENSG00000145730|P19021-6|PAM 2.577480529830294 0.5381683276125971 2 D 1 -1 12.034 0 0 1.0956 0 0 596.3155877822793 384.0373934381469 980.3529812204263 0 0 0 0 0 0.805462187404089 0 0 0 D 1.0956 - 27 + NaN NaN 112063.4 NaN 5786 2464 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8253 43.599 NaN 79235 35 0 15112 0.262 + 19068 NEIWPIYYFI 10 39 453.2332113908668 1356.6778047728005 3 453.2333984375 MULTI HCD FTMS 0 0 0 8248 22646.23828125 0.5541215622584205 -1 0.02626800537109375 5 Unmodified _NEIWPIYYFI_ REV__ENSG00000258223|ENST00000547058|PRSS58 5.40270961882225 0.4467063037482923 2 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 3 -1 24.265 0 0 1.7885 0 0 0 997.4853053433661 997.4853053433661 24.26477176880759 0 0 0 0 1 0 0.3807196863200844 0 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 1.7885 + + 9 NaN NaN 91459.8 NaN 5787 2464 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8254 43.602 NaN 54197 35 0 12544 0.261 + -1 MHLHTMMAQL 10 21 630.7802630085008 1259.5459730838015 2 630.7793579101562 MULTI HCD FTMS 0 0 0 8248 24489.5078125 0.6394261058207912 -5 0.12475204467773438 6 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 5.731851221503515 0.44496410492002586 2 GAQ{I|L} 4 -1 34.24 0 0 2.7185 0 0 872.3134632794937 0 872.3134632794937 0 34.24024714504206 0 0 0 0 0 0 0.3807196863200844 GAQ{I|L} 2.7185 - 14 NaN NaN 97886.6 NaN 5788 2464 8248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8256 43.607 NaN 1129100 35 0 356340 0.327 + 13401 KYPDRVPVI 9 81 543.8189755008225 1085.6233980684449 2 543.8189697265625 MULTI HCD FTMS 0 0 0 8255 799511.25 0.7333677997590102 2 -0.056026458740234375 1 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 67.83816525789305 0.009787749748478139 2 KYPDRV 6 3 57.428 0 0 5.2898 0 0 0 324.19227495861315 324.19227495861315 17.454517636657926 0 0 0 0 1.774227503252014 0 0.3054621874040891 0 + KYPDRV 5.2898 + + 303 + NaN NaN 275572.4 NaN 5789 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8257 43.612 NaN 556890 35 0 119000 0.261 + 13689 KYPHLVAGA 9 69 478.27158827058304 954.5286236079661 2 478.27142333984375 MULTI HCD FTMS 0 0 0 8255 267926.875 0.7846422204406763 4 -0.1086578369140625 2 Unmodified _KYPHLVAGA_ ENSG00000176978|ENST00000371579|DPP7 19.438996006549623 0.19240772610395238 2 VPV[YK]R 6 7 57 0 0 5.9715 0 0 0 209.0562685602172 209.0562685602172 14.30909368620867 0 0 0 0 1.1989700043360187 2 0 0.3494850021680094 VPV[YK]R 5.9715 - 249 + NaN NaN 173450.7 NaN 5790 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8258 43.615 NaN 193590 35 0 24009 0.261 + 34421 YPESESIMM 9 44 559.7224742459309 1117.4303955586618 2 559.7225952148438 MULTI HCD FTMS 0 0 0 8255 83611.6796875 0.6651010314188497 5 -0.13829803466796875 3 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 48.345845343767074 0.03388484103555672 2 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 60.433 0 0 5.4082 0 0 605.2333540224391 0 605.2333540224391 0 53.44335023848103 0 0 0 2 0 0.8494850021680094 0 + S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4082 + + 80 NaN NaN 110337 NaN 5791 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8259 43.619 NaN 103200 35 0 11689 0.261 + 16866 LYEVLFIFI 9 38 578.834246299399 1155.6539396655978 2 578.8339233398438 MULTI HCD FTMS 0 0 0 8255 44001.10546875 0.9575420994688172 1 -0.036285400390625 4 Unmodified _LYEVLFIFI_ REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF 18.13498045792455 0.20367413111508956 2 {I|L}YE 3 -1 52.307 0 0 4.5262 0 0 0 747.4439791315061 747.4439791315061 46.822581265925436 0 0 0 0 0.3807196863200844 2 0.3807196863200844 0 {I|L}YE 4.5262 + + 7 + NaN NaN 99825.1 NaN 5792 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8260 43.622 NaN 113580 35 0 16187 0.261 -1 FPGGKEYLM 9 51 529.2547753050528 1056.4949976769055 2 529.254638671875 MULTI HCD FTMS 0 0 0 8255 39341.01953125 0.09816445652650242 -23 0.6187248229980469 5 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 15.248480904072842 0.22861284681709862 2 GPE 3 -1 22.703 0 0 2.1489 0 0 755.3402577130875 0 755.3402577130875 0 -0.2557626122369072 -0.2557626122369072 0 0 0 0 0 0 GPE 2.1489 - 78 NaN NaN 104883.1 NaN 5793 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8261 43.625 NaN 103670 35 0 6230.9 0.261 -1 VYMELSQKL 9 47 563.7942009428141 1125.573848952428 2 563.7939453125 MULTI HCD FTMS 0 0 0 8255 37620.75390625 0.18997359952627482 -7 0.17740249633789062 6 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 34.93206674587334 0.08860942999206235 2 [YV]{M(Oxidation (M))|F}E{I|L}{[QS]|[NT]}K{I|L} 9 -1 + 66.634 0 0 5.92 5.92 93.394 0 0 0 22.376430167995878 56.17599686953518 22.376430167995878 66.63357177514193 0 1.7302046884880937 1.5228787452803376 0 0 [YV]{M(Oxidation (M))|F}E{I|L}{[QS]|[NT]}K{I|L} 5.92 + + 60 NaN NaN 106113.4 NaN 5794 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8262 43.629 NaN 71556 35 0 9450 0.262 -1 RYQQWMERF 9 46 453.88003143201183 1358.6182648962356 3 454.2153015136719 MULTI HCD FTMS 0 0 0 8255 13181.53125 0.03214336580191071 80 -2.148815155029297 7 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 16.565877749689598 0.21723083036893404 2 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 5 -1 29.961 0 0 2.2052 0 0 575.2815792552784 0 575.2815792552784 0 28.36696871556164 0 0 0 0.9247425010840047 0 0 0 W[{M(Oxidation (M))|F}E]R{M(Oxidation (M))|F} 2.2052 + + 32 + NaN NaN 100413.5 NaN 5795 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8263 43.632 NaN 126710 35 0 18932 0.261 + 19329 NNSYRLQRFL 10 46 437.57010538140196 1309.688486744406 3 437.57025146484375 MULTI HCD FTMS 0 0 0 8255 14047.6630859375 0.32743301816486636 4 -0.1086578369140625 8 Unmodified _NNSYRLQRFL_ SPTAN1|p.D359N|1|0.28|ENSG00000197694|chr9:128577496-128577496|G/A|missense_variant 0.6268255596534771 0.47198581731947004 2 {I|L} 1 9 3.9794 0 0 0.30384 0 0 901.9564443633498 291.63007532291255 1193.5865196862624 0 0 0 0 0 0 0 0 0 + {I|L} 0.30384 + + 1 + NaN NaN 102133 NaN 5796 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8264 43.635 NaN 78653 35 0 11729 0.261 + 9203 HPLMYNSIY 9 43 569.2735448636703 1136.5325367941405 2 569.2730712890625 MULTI HCD FTMS 0 0 0 8255 9141.1259765625 0.026560443239085095 -26 0.7044410705566406 9 Unmodified _HPLMYNSIY_ ENSG00000075223|ENST00000265361|SEMA3C 6.2057823575117 0.30397260197431997 2 HP{M(Oxidation (M))|F} 3 6 28.188 0 0 2.4801 0 0 0 752.3310030572874 752.3310030572874 28.187587626244124 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.4801 - 5 + NaN NaN 101209.3 NaN 5797 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8265 43.639 NaN 38398 35 0 6879.4 0.262 + 34011 YLYYTAVA 8 30 482.2447030626609 962.4748531921218 2 482.2447204589844 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _YLYYTAVA_ REV__ENSG00000177084|ENST00000320574|POLE;REV__ENST00000537064.5_1_12:133235217-133253139:-|nuORF;REV__ENST00000539215.5_1_12:133249167-133250211:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 89301.4 NaN 5798 2465 8255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8267 43.644 NaN 285610 35 0 39531 0.327 + 5825 FPDAREQEI 9 62 552.7695674698707 1103.5245820065413 2 552.7694702148438 MULTI HCD FTMS 0 0 0 8266 155774.796875 0.6361578785929494 8 -0.20776748657226562 1 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 42.312485326615175 0.05472917415473307 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 65.824 0 0 5.9649 5.9649 85.174 0 0 0 6.852190335775745 30.123337350737245 6.852190335775745 3.0102999566398125 0 1.3935078169319297 2 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}Q[R{M(Oxidation (M))|F}]ADPE;[DP]{M(Oxidation (M))|F}AREQ{I|L}E;[DP]{M(Oxidation (M))|F}AREQE{I|L};{[QN]|[E{I|L}]|[KN]}[AG][R{M(Oxidation (M))|F}]ADPE;[DP]{M(Oxidation (M))|F}ARE[AG]{I|L}E;[VP]{[CA]|SS}[R{M(Oxidation (M))|F}]ADPE 5.9649;5.6921;5.1305;4.8577;3.8191;3.5862;3.3134;2.9847;2.7518;2.5523 -;+;-;-;-;-;-;-;-;- + 560 NaN NaN 130418.7 NaN 5799 2466 8266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8268 43.648 NaN 199530 35 0 42557 0.261 + 27967 TFDASRTTF 9 53 523.2510053560947 1044.4874577789892 2 523.2509765625 MULTI HCD FTMS 0 0 0 8266 100461.453125 0.9531681727224668 -3 0.08559036254882812 2 Unmodified _TFDASRTTF_ ENSG00000133961|ENST00000555238|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-8|NUMB 43.981846655682396 0.04706587046877104 2 ADTE 4 7 50.662 0 0 4.8504 0 0 610.3060240921079 0 610.3060240921079 0 11.963950151760656 0 0 0 1.4247425010840047 0 0.9247425010840047 0 ADTE 4.8504 - 108 NaN NaN 115901.5 NaN 5800 2466 8266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8269 43.652 NaN 131480 35 0 20315 0.263 + 24180 RYFDPANGKF 10 48 405.5366247218027 1213.5880447656082 3 405.53656005859375 MULTI HCD FTMS 0 0 0 8266 30958.279296875 0.041340305286446666 15 -0.41552734375 3 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 10.150570793230772 0.4161670024087991 2 AP 2 9 15.969 0 0 1.3159 0 0 464.2391983146528 578.2371215643456 1042.4763198789983 0 0 0 0 0 0.5 0 0 0 AP 1.3159 - 12 + NaN NaN 108560.1 NaN 5801 2466 8266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8270 43.655 NaN 69573 35 0 16350 0.262 + -1 MHLHTMMAQL 10 26 630.7802630085008 1259.5459730838015 2 630.781005859375 MULTI HCD FTMS 0 0 0 8266 33881.03125 0.8846407220288038 -3 0.08559036254882812 4 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 8.745405648335112 0.42901288225909884 2 AQ{I|L} 3 -1 34.693 0 0 2.7544 0 0 929.352342674025 0 929.352342674025 0 34.69273760456403 0 0 0 0.4247425010840047 0 0 0.4247425010840047 AQ{I|L} 2.7544 + + 7 NaN NaN 96674.4 NaN 5802 2466 8266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8271 43.658 NaN 50710 35 0 3163.2 0.261 + 8640 HESPIFKQF 9 42 566.7931323113675 1131.5717116895348 2 566.7928466796875 MULTI HCD FTMS 0 0 0 8266 31150.662109375 0.46278156192653336 -12 0.3189430236816406 5 Unmodified _HESPIFKQF_ ENSG00000042493|ENST00000263867|CAPG;nc|ENSG00000042493|P40121-2|CAPG 8.745405648335112 0.2847203663274469 2 S[{M(Oxidation (M))|F}T] 3 7 11.254 0 0 0.99459 0 0 778.4350453107437 0 778.4350453107437 0 0.796896906561031 0 0 0 0.3807196863200844 0 0 0 S[{M(Oxidation (M))|F}T] 0.99459 - 9 NaN NaN 94047.1 NaN 5803 2466 8266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8273 43.663 NaN 2207300 35 0 746740 0.327 + 24828 RYPSLWRRL 9 96 416.2436918347977 1245.7092461045931 3 416.24359130859375 MULTI HCD FTMS 0 0 0 8272 866840.0625 0.6301052622588353 6 -0.165069580078125 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 34.221707139014875 0.09187037853496335 2 {I|L}{M(Oxidation (M))|F}{I|L}PS{I|L}[QT]{I|L}R 10 7 52.406 0 0 4.2069 0 0 59.048240403391056 0 59.048240403391056 0 17.937113559313772 0 0 0 1.1237125054200234 0 1.0189301784845295 0.7614393726401688 {I|L}{M(Oxidation (M))|F}{I|L}PS{I|L}[QT]{I|L}R 4.2069 - 700 + NaN NaN 413881 NaN 5804 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8274 43.668 NaN 1045100 35 0 165560 0.261 + 24667 RYLSPKYIKMF 11 85 487.93560805191515 1460.7849947559455 3 487.9355163574219 MULTI HCD FTMS 0 0 0 8272 367353 0.8983056494551919 6 -0.165069580078125 2 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 70.34457934744434 0.01499180931829742 2 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 2 + 107.67 0 0 7.371 7.371 94.324 0 0 0 19.101523083377472 88.44943838488679 19.101523083377472 25.670693164140147 0 3.1747425010840047 1.5228787452803376 2.1549471895720984 0 [Y{I|L}]RSPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[PS]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[KP]S[Y{I|L}]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[K{I|L}]Y[PS]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}A][VG]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]R[VG][VG]Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VG][VG]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[QT][{M(Oxidation (M))|F}V]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K[PS][YK]{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG][{I|L}V][VG]RY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.371;5.6137;5.1539;4.4711;4.4706;3.7655;3.7655;3.061;2.8374;2.5832 -;-;-;-;-;-;-;-;-;- 1203 NaN NaN 240500.4 NaN 5805 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8275 43.671 NaN 193020 35 0 43573 0.261 + 25286 SAVVHEYAL 9 48 494.75847780991165 987.5024026866233 2 494.7584533691406 MULTI HCD FTMS 0 0 0 8272 132029.34375 0.13991905574038385 8 -0.21107101440429688 3 Unmodified _SAVVHEYAL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 25.399314129420986 0.14091189997036632 2 A{I|L} 2 7 25.969 0 0 2.6298 0 0 785.3695973426429 0 785.3695973426429 0 8.974315640635595 0 0 0 0.5 0 0 0 + A{I|L} 2.6298 + + 23 NaN NaN 108652.5 NaN 5806 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8276 43.675 NaN 108510 35 0 17571 0.261 + 18400 MPSASMTRL 9 37 497.24574225570143 992.4769315782029 2 497.2460632324219 MULTI HCD FTMS 0 0 0 8272 49492.36328125 0.8817432677539977 -2 0.056026458740234375 4 Unmodified _MPSASMTRL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 27.223235318498237 0.1251536255799991 2 MPSAA{M(Oxidation (M))|F} 6 4 59.513 0 0 5.9964 0 0 0 385.21885095767817 385.21885095767817 59.513356515246514 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 MPSAA{M(Oxidation (M))|F} 5.9964 - 37 + NaN NaN 99614.1 NaN 5807 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8277 43.678 NaN 67504 35 0 9810.3 0.261 + 4324 EVTDVDSVVGR 11 41 588.2987479876325 1174.582943042065 2 588.2991943359375 MULTI HCD FTMS 0 0 0 8272 28597.126953125 0.38240643457615725 4 -0.10861968994140625 5 Unmodified _EVTDVDSVVGR_ DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;nc|ENSG00000107099|Q8NF50-2|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8 8.444304893310646 0.381886813817475 2 {NN|[MP]|[D{I|L}]|[EV]}TV[YR]Y[{M(Oxidation (M))|F}V] 9 6 + 20.123 0 0 1.7132 1.7132 85.22 0 0 0 9.665762445130499 4.137342758552695 4.137342758552695 9.622114391106003 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}TV[YR]Y[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}T[DV]D[VS]V{[NV]|[RG]} 1.7132;0.89404 -;+ + 86 + NaN NaN 99634.9 NaN 5808 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8278 43.681 NaN 137130 35 0 18363 0.261 + 9000 HPEEGDLDL 9 50 512.732739014932 1023.450925096664 2 512.7325439453125 MULTI HCD FTMS 0 0 0 8272 40588.00390625 0.03263457133610628 31 -0.8939399719238281 6 Unmodified _HPEEGDLDL_ ENSG00000130254|ENST00000252542|SAFB2;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;nc|ENSG00000160633|Q15424|SAFB 10.823927491677226 0.26684000660059787 2 {I|L}D{I|L} 3 6 25.177 0 0 2.46 0 0 664.2432728498062 0 664.2432728498062 0 19.69273760456403 0 0 0 0.5 0 0 0 + {I|L}D{I|L} 2.46 + + 13 NaN NaN 103356.3 NaN 5809 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8279 43.685 NaN 51649 35 0 5059.1 0.261 -1 VMSQALKATF 10 42 556.2941079331289 1110.5736629330577 2 556.294189453125 MULTI HCD FTMS 0 0 0 8272 16179.26171875 0.05572211192308069 -16 0.437652587890625 7 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 9.5439744041441 0.42184090036563754 2 N{M(Oxidation (M))|F} 2 -1 15.573 0 0 1.4023 0 0 831.4637928693375 0 831.4637928693375 0 10.088643834802156 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 1.4023 - 7 NaN NaN 88842.9 NaN 5810 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8280 43.688 NaN 90512 35 0 6939.2 0.261 -1 TAQPQELVM 9 39 516.7549252132502 NaN 0 516.7542114257812 PEAK HCD FTMS 0 0 0 8272 20224.435546875 0.5824814948735563 1 -0.032928466796875 8 Oxidation (M) _TAQPQELVM(Oxidation (M))_ ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197 17.11289562659939 0.20677709319598864 2 {I|L}V 2 -1 22.206 0 0 2.1528 0 0 654.297160141541 162.0227450006469 816.3199051421878 0 0 0 0 0 1.4247425010840047 0 0 0 {I|L}V 2.1528 + + 16 + NaN NaN 95349.6 NaN 5811 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8281 43.691 NaN 62153 35 0 4502.3 0.261 -1 CRDCCMWT 8 39 574.1927644096241 1146.3709758860482 2 574.192626953125 MULTI HCD FTMS 0 0 0 8272 15564.7861328125 0.7277236981087899 3 -0.08227157592773438 9 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RDC(Carbamidomethyl (C))CM(Oxidation (M))WT_ ENST00000531002.1_1_11:30605754-30618795:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90342.6 NaN 5812 2467 8272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8283 43.696 NaN 205230 35 0 31027 0.327 + 18961 NAIKDYEL 8 54 483.2506937119522 964.4868344907044 2 483.25042724609375 MULTI HCD FTMS 0 0 0 8282 134703.9375 0.1065827777116765 -5 0.1382598876953125 1 Unmodified _NAIKDYEL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 36.12702656103203 0.2806826090546818 2 {[QG]|[NA]}{I|L} 3 5 37.447 0 0 3.8826 0 0 0 663.3002581212172 663.3002581212172 18.863781092484686 0 0 0 0 1 1.6989700043360187 0 0 + {[QG]|[NA]}{I|L} 3.8826 + + 37 NaN NaN 115148.7 NaN 5813 2468 8282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8284 43.701 NaN 103700 35 0 12173 0.261 + 16636 LWAQLRVP 8 52 491.7958168725387 981.5770808118774 2 492.2980651855469 MULTI HCD FTMS 0 0 0 8282 20319.236328125 0.9249538543252107 10 -0.2604522705078125 2 Unmodified _LWAQLRVP_ REV__ENSG00000127481|ENST00000375254|UBR4;REV__ENST00000419533.1_1_1:19477984-19504233:-|nuORF;REV__nc|ENSG00000127481|Q5T4S7-2|UBR4;REV__nc|ENSG00000127481|Q5T4S7-3|UBR4;REV__nc|ENSG00000127481|Q5T4S7-4|UBR4;REV__nc|ENSG00000127481|Q5T4S7-5|UBR4 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5775 0 0 816.53125669254 0 816.53125669254 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5775 - 13 + NaN NaN 118264.4 NaN 5814 2468 8282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8285 43.704 NaN 67122 35 0 9453.9 0.261 -1 0 32 474.0636974253017 NaN 0 474.0634765625 PEAK HCD FTMS 0 0 0 8282 13374.5947265625 0.512993712415311 14 -0.3892822265625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107859.3 NaN 5815 2468 8282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8286 43.708 NaN 20283 35 0 4485.6 0.261 + -1 VVMKHVEKWN 10 17 643.3399343049931 1284.6653156767861 2 643.3397216796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _VVM(Oxidation (M))KHVEKWN_ REV__ENSG00000111716|ENST00000350669|LDHB 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100071.4 NaN 5816 2468 8282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8287 43.711 NaN 47321 35 0 7872.5 0.264 + 21917 QDSLHVSIT 9 25 500.25867391095454 998.5027948887091 2 500.25860595703125 MULTI HCD FTMS 0 0 0 8282 11654.162109375 0.4565666707526298 -3 0.08895492553710938 5 Unmodified _QDSLHVSIT_ ENSG00000162946|ENST00000439617|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;ENST00000602700.5_1_1:231830478-231954093:+|nuORF;nc|ENSG00000162946|Q9NRI5-11|DISC1;nc|ENSG00000162946|Q9NRI5-2|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-5|DISC1;nc|ENSG00000162946|Q9NRI5-6|DISC1;nc|ENSG00000162946|Q9NRI5-7|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;nc|ENSG00000162946|Q9NRI5-9|DISC1 10.823927491677226 0.26684000660059787 2 {[QD]|[EN]|[WG]|[KD]|[RS]}S 3 6 18.2 0 0 1.8227 0 0 0 665.3628023736936 665.3628023736936 2.715299873086611 0 0 0 0 0.5 0 0.4247425010840047 0 + {[QD]|[EN]|[WG]|[KD]|[RS]}S 1.8227 + + 3 + NaN NaN 95578 NaN 5817 2468 8282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8289 43.716 NaN 687100 35 0 177620 0.327 -1 IEMQIIRNDL 10 79 420.8909916723161 NaN 0 420.9031677246094 PEAK HCD FTMS 0 0 0 8288 6598.25439453125 0.5028158783135137 -2 0.052631378173828125 1 Oxidation (M) _IEM(Oxidation (M))QIIRNDL_ tr|U7SJ70|U7SJ70_FUSNUPara-aminobenzoatesynthetasecomponentIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02129PE=4SV=1 5.047519993296601 0.3358643114838419 2 W 1 -1 5.4846 0 0 0.6531 0 0 227.41848272678038 423.24604211978755 650.6645248465679 0 0 0 0 0 0 0 0 0 W 0.6531 - 12 + NaN NaN 189126.4 NaN 5818 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8290 43.721 NaN 321660 35 0 47740 0.261 + 17758 MEEEAGQTSI 10 50 547.7369961677302 1093.4594394022604 2 547.7369995117188 MULTI HCD FTMS 0 0 0 8288 140513.984375 0.7354332147205468 2 -0.055988311767578125 2 Unmodified _MEEEAGQTSI_ ENSG00000160445|ENST00000291900|ZER1 22.65808497894818 0.29917593477267174 2 SQTS{I|L} 5 6 54.68 0 0 5.0007 0 0 559.1926136701187 0 559.1926136701187 0 50.07638152291939 0 0 0 1.4247425010840047 0 0.8494850021680094 0 SQTS{I|L} 5.0007 - 46 NaN NaN 139120.2 NaN 5819 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8291 43.724 NaN 327310 35 0 56302 0.261 + 15979 LPQHPDVEM 9 68 533.2550250789423 1064.4954972246844 2 533.2554321289062 MULTI HCD FTMS 0 0 0 8288 86946.078125 0.8539870692962699 1 -0.02964019775390625 3 Unmodified _LPQHPDVEM_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 24.990960013464015 0.14443998892849796 2 MQQVC 5 7 30.266 0 0 2.8432 0 0 0 472.2312608763608 472.2312608763608 13.098943791441965 0 0 0 0 0.5 0 0 0.3494850021680094 MQQVC 2.8432 - 189 + NaN NaN 134496 NaN 5820 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8292 43.727 NaN 194120 35 0 23323 0.261 + 6800 FPSAPDVKA 9 51 466.2476435967855 NaN 0 466.2475891113281 PEAK HCD FTMS 0 0 0 8288 106487.5546875 0.4802061618862978 5 -0.13539505004882812 4 Unmodified _FPSAPDVKA_ ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP 53.832793166522166 0.036978982887966305 2 P{[SA]|[TG]}[DP]V 6 3 19.468 0 0 2.0922 0 0 147.06796653341615 214.11940942935783 361.187375962774 0 0 0 0 0 1.75 0 0.3807196863200844 0 + P{[SA]|[TG]}[DP]V 2.0922 + + 22 + NaN NaN 114492.8 NaN 5821 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8293 43.731 NaN 215930 35 0 32187 0.261 -1 LPDDPRQMTL 10 49 601.2976437003749 1200.5807344675497 2 601.2977905273438 MULTI HCD FTMS 0 0 0 8288 82948.3359375 0.687041022755002 -4 0.1086578369140625 5 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 19.625955294349634 0.3275374527965692 2 {I|L}PDD 4 -1 42.423 0 0 3.5335 0 0 0 757.3672420723824 757.3672420723824 29.235162698957282 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}PDD 3.5335 + + 55 + NaN NaN 119567.6 NaN 5822 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8294 43.734 NaN 82784 35 0 12623 0.261 + -1 YLARMQEQL 9 44 584.2948338580441 1166.575114782888 2 584.295166015625 MULTI HCD FTMS 0 0 0 8288 35243.9375 0.09709053631431891 9 -0.24074935913085938 6 Oxidation (M) _YLARM(Oxidation (M))QEQL_ REV__DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;REV__ENSG00000096696|ENST00000379802|DSP;REV__nc|ENSG00000096696|P15924-2|DSP;REV__nc|ENSG00000096696|P15924-3|DSP 13.90604991867851 0.24021115267848145 2 [Y{I|L}]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EQ 8 -1 43.633 0 0 3.7403 0 0 0 128.07238087181318 128.07238087181318 28.148350154927826 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [Y{I|L}]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EQ 3.7403 - 73 NaN NaN 96822.9 NaN 5823 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8295 43.737 NaN 56699 35 0 18841 0.261 + 24176 RYFDPANGKF 10 25 607.8012916224915 1213.5880303117829 2 607.8016967773438 MULTI HCD FTMS 0 0 0 8288 24194.8046875 0.04057008546175517 18 -0.5184173583984375 7 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 4.5288652416199255 0.4513317009562028 2 M 1 10 10.485 0 0 0.86393 0 0 632.328976587226 447.1998690240844 1079.5288456113103 0 0 0 0 0 0.5 0 0 0 M 0.86393 - 7 + NaN NaN 92457.9 NaN 5824 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8296 43.741 NaN 60211 35 0 14760 0.261 -1 MVIKLQERTL 10 32 623.8621812402573 1245.7098095473145 2 623.8610229492188 MULTI HCD FTMS 0 0 0 8288 4258.54296875 0.12178881777195079 5 -0.13539505004882812 8 Oxidation (M) _M(Oxidation (M))VIKLQERTL_ ENST00000379942.4_1_X:18956779-18959669:-|nuORF 1.3295316138638542 0.46826628246186464 2 H 1 -1 4.6041 0 0 0.3696 0 0 508.3027183381333 597.3392428033811 1105.6419611415145 0 0 0 0 0 0 0 0 0 H 0.3696 - 3 + NaN NaN 91459.2 NaN 5825 2469 8288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8298 43.746 NaN 350010 35 0 110190 0.327 + 13402 KYPDRVPVI 9 56 543.8189755008225 1085.6233980684449 2 543.8189086914062 MULTI HCD FTMS 0 0 0 8297 208029.34375 0.19081910618674633 7 -0.1815032958984375 1 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 33.4449034751529 0.0954363425218424 2 KYPDRV 6 3 46.899 0 0 4.32 0 0 0 324.19294153385005 324.19294153385005 20.70107520596089 0 0 0 0 1.4247425010840047 0 0 0 + KYPDRV 4.32 + + 101 + NaN NaN 146531.5 NaN 5826 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8299 43.75 NaN 467070 35 0 36898 0.263 -1 KMPKFKMPSF 10 74 419.55570075089355 1255.6452728528807 3 419.5556640625 MULTI HCD FTMS 0 0 0 8297 220285.6875 0.9332667477891132 1 -0.026348114013671875 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 38.558800761779466 0.1579133335467903 2 KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 -1 + 55.813 0 0 4.445 4.445 83.545 0 0 0 41.12063790808534 16.532125137753432 16.532125137753432 4.771212547196626 0 1.0994850021680094 0 0.3494850021680094 0 KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 4.445;4.065 -;+ + 207 + NaN NaN 165916.6 NaN 5827 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8300 43.754 NaN 52224 35 0 13128 0.261 + -1 DPCESEQSGLL 11 24 617.767118858846 1233.5196847844918 2 617.7664794921875 MULTI HCD FTMS 0 0 0 8297 20474.458984375 0.41809567924475327 6 -0.15851211547851562 3 Carbamidomethyl (C) _DPC(Carbamidomethyl (C))ESEQSGLL_ REV__ENSG00000158615|ENST00000367188|PPP1R15B 2.282774691075616 0.408909192180357 2 {I|L}{I|L} 2 -1 20.969 0 0 1.6999 0 0 989.3421498029312 0 989.3421498029312 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.6999 + + 1 NaN NaN 97051.8 NaN 5828 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8301 43.757 NaN 93603 35 0 8510.1 0.264 + 17713 MAVIDGNVM 9 44 491.2222638315022 980.4299747298044 2 491.2223815917969 MULTI HCD FTMS 0 0 0 8297 16123.46484375 0.22017440881703237 -10 0.2697563171386719 4 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 43.85829265575387 0.04763305254408404 2 AV{M(Oxidation (M))|F} 3 6 28.288 0 0 2.8853 0 0 645.2779408185562 0 645.2779408185562 0 7.35863111416478 0 0 0 0.9247425010840047 0 0 0 AV{M(Oxidation (M))|F} 2.8853 - 12 NaN NaN 105541.5 NaN 5829 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8302 43.76 NaN 71015 35 0 12354 0.261 -1 RADQFEYVM 9 37 587.7634545185698 1173.5123561039395 2 588.264892578125 MULTI HCD FTMS 0 0 0 8297 14651.798828125 0.590673298117334 5 -0.1287994384765625 5 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 2 YV{M(Oxidation (M))|F} 3 -1 36.198 0 0 3.0846 0 0 746.3355580060562 0 746.3355580060562 0 36.197887582883936 0 0 0 1 0 0 0 YV{M(Oxidation (M))|F} 3.0846 + + 22 NaN NaN 93308.6 NaN 5830 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8303 43.764 NaN 65425 35 0 5338 0.261 -1 DSGRMCINM 9 41 550.2178658337292 NaN 0 550.2177124023438 PEAK HCD FTMS 0 0 0 8297 9700.1787109375 0.7190314478529748 1 -0.026348114013671875 6 Carbamidomethyl (C),Oxidation (M) _DSGRMC(Carbamidomethyl (C))INM(Oxidation (M))_ ENSG00000160883|ENST00000292432|HK3 1.844237919475145 0.28630992268396543 2 D{I|L} 2 -1 4.6927 0 0 0.42723 0 0 387.07658752507706 480.21433435611567 867.2909218811927 0 0 0 0 0 0 0 0 0 D{I|L} 0.42723 - 5 + NaN NaN 96327.7 NaN 5831 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8304 43.767 NaN 66735 35 0 17697 0.261 -1 CACMCTCTPMC 11 34 612.1806373331963 NaN 0 612.18115234375 PEAK HCD FTMS 0 0 0 8297 18192.064453125 0.4765705537330487 -59 1.5739974975585938 7 Carbamidomethyl (C) _CACMCTC(Carbamidomethyl (C))TPMC_ ENST00000544665.7_1_16:31343047-31343377:+|nuORF 0.3070304955306653 0.3412491863730806 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95936 NaN 5832 2470 8297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8306 43.772 NaN 452440 35 0 24355 0.327 + 31829 VYMELSQKL 9 88 563.7942009428141 1125.573848952428 2 563.7940673828125 MULTI HCD FTMS 0 0 0 8305 173417.703125 0.875707737445474 -1 0.026348114013671875 1 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 128.93241758739586 0.0006697181619526092 2 VY{M(Oxidation (M))|F}E{I|L}SQK{I|L} 9 0 + 103.33 0 0 9.1801 9.1801 89.433 0 0 0 1.2368768575584568 1.2368768575584568 1.2368768575584568 1.2368768575584568 0 3.0356668758921828 2 0.3494850021680094 0.9634679910804405 + + VY{M(Oxidation (M))|F}E{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L};VY{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]DQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[K{I|L}]Q;[YV]{M(Oxidation (M))|F}[{I|L}T]D[AG]K{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]D[K{I|L}]Q;{[QS]|[NT]}KHH[{M(Oxidation (M))|F}V]M{I|L} 9.1801;9.0703;8.3621;8.2522;6.3329;6.1624;5.5149;3.4251;2.0893 +;+;-;-;-;-;-;-;- + 737 + NaN NaN 152641.7 NaN 5833 2471 8305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8307 43.777 NaN 149720 35 0 16477 0.261 + 34422 YPESESIMM 9 40 559.7224742459309 1117.4303955586618 2 559.7225341796875 MULTI HCD FTMS 0 0 0 8305 64748.0390625 0.5150475115889199 11 -0.31359100341796875 2 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 61.357469665136826 0.01568246967499496 2 SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 69.373 0 0 6.2083 0 0 389.15953261543126 0 389.15953261543126 0 62.38351285388511 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + SES{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.2083 + + 135 NaN NaN 115408.7 NaN 5834 2471 8305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8308 43.78 NaN 191300 35 0 47766 0.261 + 10509 IPENNPVKL 9 45 512.2953716635819 1022.5761903939639 2 512.295166015625 MULTI HCD FTMS 0 0 0 8305 81195.171875 0.6082468893206456 -2 0.055988311767578125 3 Unmodified _IPENNPVKL_ ENSG00000158769|ENST00000368026|F11R;nc|ENSG00000158769|Q9Y624-2|F11R 33.4449034751529 0.0954363425218424 2 {I|L}PE{NN|[MP]|[D{I|L}]|[EV]}[VP]K{I|L} 9 0 + 40.709 0 0 3.981 3.981 89.283 0 0 0 29.739693432381884 8.485221620214105 8.485221620214105 30.351584312837044 0 2.1549471895720984 0 0.3807196863200844 0 + + {I|L}PE{NN|[MP]|[D{I|L}]|[EV]}[VP]K{I|L};[{I|L}P]{[MG]|[TS]}[HD]{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HV]{[VA]|[{I|L}G]}{I|L}K{I|L} 3.981;1.0129;0.25139 +;-;- + 58 + NaN NaN 115257.3 NaN 5835 2471 8305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8309 43.783 NaN 134670 35 0 25702 0.461 -1 FPGGKEYLM 9 48 529.2547753050528 1056.4949976769055 2 529.2550659179688 MULTI HCD FTMS 0 0 0 8305 54286.62890625 0.13545702390871991 -17 0.44730377197265625 4 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 31.26834338654808 0.10542797264966089 2 {M(Oxidation (M))|F}PG{[{M(Oxidation (M))|F}D]|MM}[KS]{I|L}{M(Oxidation (M))|F} 9 -1 + 42.954 0 0 4.0657 4.0657 83.886 0 0 0 9.34833115752496 15.334778045573074 9.34833115752496 6.817496819840649 0 1.1861818737241734 0 0 0 {M(Oxidation (M))|F}PG{[{M(Oxidation (M))|F}D]|MM}[KS]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}D{M(Oxidation (M))|F}[PG][KS]{I|L}{M(Oxidation (M))|F};[WY][DV][KS]{I|L}{M(Oxidation (M))|F} 4.0657;3.4204;1.6023 -;-;- 164 + NaN NaN 100677.6 NaN 5836 2471 8305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8310 43.79 NaN 63486 35 0 8578.7 0.262 -1 RYQQWMERF 9 35 453.88003143201183 1358.6182648962356 3 453.8799133300781 MULTI HCD FTMS 0 0 0 8305 15248.85546875 0.026051473406816815 85 -2.2637062072753906 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 12.174745833636585 0.2551692358394414 2 W 1 -1 15.485 0 0 1.1397 0 0 575.2804140276419 594.2368868463499 1169.5173008739916 0 0 0 0 0 0.8494850021680094 0 0 0 W 1.1397 + + 19 + NaN NaN 96880.6 NaN 5837 2471 8305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8312 43.799 NaN 1521000 35 0 496630 0.327 + 24829 RYPSLWRRL 9 94 416.2436918347977 1245.7092461045931 3 416.24365234375 MULTI HCD FTMS 0 0 0 8311 566337.1875 0.41166999253292896 11 -0.3130378723144531 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 40.72490554402381 0.06201705472789164 2 RY[WK]W{I|L} 6 5 38.02 0 0 3.0521 0 0 0 310.1636141412719 310.1636141412719 4.951818904348137 0 0 0 0 0.7302046884880937 1 0 0.3807196863200844 RY[WK]W{I|L} 3.0521 - 641 + NaN NaN 330110 NaN 5838 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8313 43.803 NaN 765440 35 0 127980 0.261 + 20166 NYKKFYEQF 9 72 422.8766604855716 1265.6081520569148 3 422.87652587890625 MULTI HCD FTMS 0 0 0 8311 233647.28125 0.1919254675285684 -5 0.13586807250976562 2 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 22.65808497894818 0.16459551161911185 2 Q{M(Oxidation (M))|F} 2 7 33.711 0 0 2.6637 0 0 972.4723478059917 0 972.4723478059917 0 26.237125054200234 0 0 0 0.8494850021680094 0 0 0.4247425010840047 + Q{M(Oxidation (M))|F} 2.6637 + + 63 NaN NaN 201692.8 NaN 5839 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8314 43.807 NaN 217260 35 0 30671 0.261 + 5826 FPDAREQEI 9 60 552.7695674698707 1103.5245820065413 2 552.7696533203125 MULTI HCD FTMS 0 0 0 8311 130112.21875 0.5313562573632582 14 -0.4021492004394531 3 Unmodified _FPDAREQEI_ ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO 61.08992128646608 0.016056751534446034 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E 9 2 + 60.235 0 0 5.4584 5.4584 85.691 0 0 0 15.994690019878334 30.80173315600403 15.994690019878334 6.505149978319906 0 1.6989700043360187 1.6989700043360187 0.6382104921644451 0.3252574989159953 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAREQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}GEQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DARE[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}[KS]DPE;{[QN]|[E{I|L}]|[KN]}{[MS]|[{M(Oxidation (M))|F}A]}NVADPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}GEQE{I|L};[DP]{M(Oxidation (M))|F}AREQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[RE]|[WV]}GE[AG]{I|L}E 5.4584;4.8689;4.624;4.1031;4.0345;4.0173;3.7944;3.5137;3.3525;3.2687 -;+;-;-;-;-;-;-;-;- + 678 NaN NaN 104278.7 NaN 5840 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8315 43.81 NaN 137480 35 0 33360 0.262 + 16573 LVDRVPTL 8 45 456.77930256166746 911.544052190135 2 456.779296875 MULTI HCD FTMS 0 0 0 8311 92335 1 0 0 4 Unmodified _LVDRVPTL_ ENSG00000265203|ENST00000584701|RBP3;RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant 43.77239144664712 0.1824688044483776 2 {I|L}VDR[VP]T{I|L} 8 0 + 77.229 0 0 8.4723 8.4723 94.797 0 0 0 65.99153133413289 10.246134210770919 10.246134210770919 14.559771852360797 0 1.774227503252014 2 1.1861818737241734 0 + + {I|L}VDR[VP]T{I|L};{I|L}VDR[{I|L}T][VP];[{I|L}V]DR[VP]T{I|L};[{I|L}V]DR[TP]V{I|L} 8.4723;6.875;5.6374;5.0266 +;-;+;- + 38 + NaN NaN 106720 NaN 5841 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8316 43.814 NaN 129990 35 0 30389 0.261 + 27968 TFDASRTTF 9 45 523.2510053560947 1044.4874577789892 2 523.2509155273438 MULTI HCD FTMS 0 0 0 8311 60339.34765625 0.5724936675683137 3 -0.07520294189453125 5 Unmodified _TFDASRTTF_ ENSG00000133961|ENST00000555238|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-8|NUMB 32.037481411007896 0.10189719824197178 2 D[WK]TT{M(Oxidation (M))|F} 6 5 35.891 0 0 3.4362 0 0 248.11566359687657 0 248.11566359687657 0 21.938200260161125 0 0 0 1.5 0 0 0 D[WK]TT{M(Oxidation (M))|F} 3.4362 - 34 NaN NaN 103663.5 NaN 5842 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8317 43.817 NaN 150010 35 0 13588 0.261 -1 KCGEGTYSL 9 59 507.73154271308795 1013.4485324929759 2 508.2328796386719 MULTI HCD FTMS 0 0 0 8311 56225.05078125 1 0 0 6 Carbamidomethyl (C) _KC(Carbamidomethyl (C))GEGTYSL_ ENSG00000164659|ENST00000450689|ELAPOR2 19.256988751693697 0.19398022840297344 2 S{I|L} 2 -1 26.013 0 0 2.5668 0 0 795.3208397611826 0 795.3208397611826 0 20.52887198244136 0 0 0 0.5 0 0.3054621874040891 0 S{I|L} 2.5668 + + 13 NaN NaN 100914.7 NaN 5843 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8318 43.82 NaN 111620 35 0 19875 0.261 + 30715 VPGPPYLGR 9 51 478.27158827058304 954.5286236079661 2 478.271484375 MULTI HCD FTMS 0 0 0 8311 50753.19140625 0.14863420028114258 11 -0.3130378723144531 7 Unmodified _VPGPPYLGR_ REV__ENST00000416255.5_1_2:101179722-101179833:+|nuORF 12.531546534597751 0.2520865569484384 2 VP 2 -1 41.211 0 0 4.3175 0 0 0 755.3843899424322 755.3843899424322 16.435078169319297 0 0 0 0 0.3252574989159953 1.6989700043360187 0 0 VP 4.3175 + + 11 + NaN NaN 100254.5 NaN 5844 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8319 43.824 NaN 199370 35 0 10760 0.261 + 20170 NYKKFYEQF 9 64 633.8115012324201 1265.6084495316402 2 633.81103515625 MULTI HCD FTMS 0 0 0 8311 89586.3203125 0.20794245384466128 -6 0.155609130859375 8 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 79.42699986076722 0.0060377907040421955 2 NYKK{M(Oxidation (M))|F}YE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 0 + 77.857 0 0 6.1517 6.1517 86.014 0 0 0 29.20818753952375 4.431890546242343 4.431890546242343 4.431890546242343 0 1.4731975075880328 2 0.5941876774005248 0.7059771852360797 + + NYKK{M(Oxidation (M))|F}YE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};NYKK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}QE;NYK[RH]{M(Oxidation (M))|F}[NG][KC];NP{[HG]|PP}K{M(Oxidation (M))|F}YE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};NP{[HG]|PP}K{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}QE;{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[RH]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[RH]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{M(Oxidation (M))|F}E][SG]{M(Oxidation (M))|F}[RH]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YE][RH]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}E][YQ][RH]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.1517;5.8016;2.801;2.4865;2.1364;1.6925;1.2391;0.97612;0.77442;0.45999 +;-;-;-;-;-;-;-;-;- + 500 + NaN NaN 116454.2 NaN 5845 2472 8311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8321 43.829 NaN 753800 35 0 119850 0.327 + 24668 RYLSPKYIKMF 11 83 487.93560805191515 1460.7849947559455 3 487.9353942871094 MULTI HCD FTMS 0 0 0 8320 263077 0.6433146192945846 12 -0.3432426452636719 1 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 61.16457814134879 0.035572029071956085 2 SPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 3 76.452 0 0 5.2336 0 0 432.24485976386876 0 432.24485976386876 0 53.207837215743226 0 0 0 2.5924778212679485 0 2.079689690656103 0 + SPKY{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2336 + + 312 NaN NaN 192591.3 NaN 5846 2473 8320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8322 43.833 NaN 785260 35 0 168640 0.261 -1 RYKLYQEMF 9 60 431.88120739171455 1292.6217927753437 3 431.88128662109375 MULTI HCD FTMS 0 0 0 8320 229360.9375 0.6632982185464853 -5 0.13214111328125 2 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 13.614867670302875 0.2427269026982664 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.2212 0 0 980.5101821775869 0 980.5101821775869 0 10.752574989159953 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2212 + + 21 NaN NaN 201826.1 NaN 5847 2473 8320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8323 43.837 NaN 75310 35 0 17862 0.261 + -1 MHLHTMMAQL 10 32 630.7802630085008 1259.5459730838015 2 630.7803955078125 MULTI HCD FTMS 0 0 0 8320 26165.25 0.6831800803602801 4 -0.09870529174804688 3 3 Oxidation (M) _M(Oxidation (M))HLHTM(Oxidation (M))M(Oxidation (M))AQL_ REV__ENSG00000128573|ENST00000350908|FOXP2;REV__ENST00000412402.5_1_7:114271612-114299479:+|nuORF;REV__ENST00000441290.6_1_7:114271612-114296599:+|nuORF;REV__nc|ENSG00000128573|O15409-2|FOXP2;REV__nc|ENSG00000128573|O15409-4|FOXP2;REV__nc|ENSG00000128573|O15409-6|FOXP2;REV__nc|ENSG00000128573|O15409-9|FOXP2 17.11289562659939 0.35104376501799556 2 AQ{I|L} 3 -1 39.693 0 0 3.1514 0 0 929.3581410138687 0 929.3581410138687 0 39.69273760456403 0 0 0 0.9247425010840047 0 0 0.4247425010840047 AQ{I|L} 3.1514 + + 11 NaN NaN 97129.2 NaN 5848 2473 8320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8324 43.84 NaN 96375 35 0 6602.8 0.261 -1 VMSQALKATF 10 50 556.2941079331289 1110.5736629330577 2 556.293212890625 MULTI HCD FTMS 0 0 0 8320 40517.015625 0.13954244134817587 -10 0.2704010009765625 4 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 37.07464296494664 0.1707926854601146 2 KAT{M(Oxidation (M))|F} 4 -1 44.781 0 0 4.0323 0 0 645.3147956008296 0 645.3147956008296 0 37.33410649039925 0 0 0 1.7614393726401687 0 0 0 KAT{M(Oxidation (M))|F} 4.0323 + + 44 + NaN NaN 109725.3 NaN 5849 2473 8320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8325 43.843 NaN 72788 35 0 5054.8 0.261 + 35379 YYDKHFTEF 9 40 625.2799649437144 1248.5453769542287 2 625.2802124023438 MULTI HCD FTMS 0 0 0 8320 25370.27734375 0.38884295531592666 -5 0.13214111328125 5 Unmodified _YYDKHFTEF_ ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A 21.536976647645854 0.1742816388551942 2 YY[W{M(Oxidation (M))|F}]{[HG]|PP}TE{M(Oxidation (M))|F} 9 3 + 42.381 0 0 3.3944 3.3944 81.02 0 0 0 14.946049681132934 9.933787369250169 9.933787369250169 1.4612803567823818 0 0.5 2 0.4247425010840047 0 YY[W{M(Oxidation (M))|F}]{[HG]|PP}TE{M(Oxidation (M))|F};YY[Y{I|L}][HN]TE{M(Oxidation (M))|F};YY[Y{I|L}]G{[HG]|PP}TE{M(Oxidation (M))|F};{[ET]|[MV]}WWG{[HG]|PP}TE{M(Oxidation (M))|F} 3.3944;3.2774;3.2407;0.91969 -;-;-;- 43 NaN NaN 91502.7 NaN 5850 2473 8320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8326 43.846 NaN 47850 35 0 4285.9 0.261 + 14067 KYVSGEFRF 9 42 566.7931323113675 1131.5717116895348 2 566.7935180664062 MULTI HCD FTMS 0 0 0 8320 20429.927734375 0.30351181088105483 -5 0.13214111328125 6 Unmodified _KYVSGEFRF_ ENSG00000124784|ENST00000379834|RIOK1 5.296884461304476 0.3108627248283497 2 KYV 3 6 26.198 0 0 2.3152 0 0 0 738.322736814182 738.322736814182 20.713337517843655 0 0 0 0 0 0 0 0 + KYV 2.3152 + + 9 + NaN NaN 90839.6 NaN 5851 2473 8320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8328 43.852 NaN 1654200 35 0 237320 0.326 + 900 AYAPPPHVI 9 89 482.76608329503614 963.5176136568723 2 483.25054931640625 MULTI HCD FTMS 0 0 0 8327 46776.16796875 0.36401552134321485 -5 0.13539505004882812 1 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 28.173230860318316 0.11963627304438548 2 {[QG]|[NA]}{I|L}KDYE 7 8 46.903 0 0 4.8679 0 0 0 127.10293793853101 127.10293793853101 7.505405122191675 0 0 0 0 0 1.6989700043360187 0.2742275032520141 0.9916440611282626 {[QG]|[NA]}{I|L}KDYE 4.8679 - 645 NaN NaN 337710.6 NaN 5852 2474 8327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8329 43.856 NaN 452580 35 0 61142 0.261 + -1 MPEVKVETI 9 78 531.2809748085936 1060.547396683987 2 531.80078125 MULTI HCD FTMS 0 0 0 8327 52119.1796875 0.6134509920036487 -8 0.20776748657226562 2 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 21.536976647645854 0.1742816388551942 2 T{I|L} 2 -1 21.281 0 0 2.0066 0 0 828.3900013654312 0 828.3900013654312 0 5.880456295278407 0 0 0 0 0 0.3807196863200844 0 T{I|L} 2.0066 + + 133 NaN NaN 163290.1 NaN 5853 2474 8327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8330 43.86 NaN 164570 35 0 21083 0.261 + -1 SDLHFSIEM 9 55 547.7458622967722 NaN 0 547.736572265625 PEAK HCD FTMS 0 0 0 8327 11426.978515625 0.4132604564248381 -3 0.07940673828125 3 Oxidation (M) _SDLHFSIEM(Oxidation (M))_ REV__ENSG00000145041|ENST00000684031|DCAF1;REV__nc|ENSG00000145041|Q9Y4B6-2|DCAF1 15.847184025352803 0.21527282152051216 2 E 1 -1 17.034 0 0 1.5578 0 0 165.04561049629064 796.3654522602068 961.4110627564974 0 0 0 0 0 0.8807196863200843 0 0.4247425010840047 0 E 1.5578 + + 28 NaN NaN 104814.8 NaN 5854 2474 8327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8331 43.863 NaN 212150 35 0 44886 0.261 + 15996 LPQSKETLL 9 53 514.8029592556205 1027.591365578041 2 514.8028564453125 MULTI HCD FTMS 0 0 0 8327 100209.578125 0.3409318913723685 -4 0.10575485229492188 4 Unmodified _LPQSKETLL_ ENSG00000148297|ENST00000343730|MED22;ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22 67.83816525789305 0.009787749748478139 2 {I|L}PQS 4 5 67.409 0 0 6.5599 0 0 0 599.3404024713499 599.3404024713499 36.17931555708239 0 0 0 0 0.5 1.5228787452803376 1.1747425010840047 0.3494850021680094 + {I|L}PQS 6.5599 + + 102 + NaN NaN 117656.6 NaN 5855 2474 8327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8332 43.866 NaN 154470 35 0 14501 0.261 + 18032 MLPDPQNIS 9 56 507.7497057762413 1013.4848586192826 2 507.7315979003906 MULTI HCD FTMS 0 0 0 8327 5085.3564453125 0.1154065438377344 9 -0.2608795166015625 5 Unmodified _MLPDPQNIS_ ENSG00000198860|ENST00000645668|TSEN15;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF 8.593279151180031 0.2858735984551981 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A 3 7 23.301 0 0 2.2991 0 0 0 695.3004463480513 695.3004463480513 13.836805933051153 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A 2.2991 - 28 NaN NaN 127391.6 NaN 5856 2474 8327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8333 43.87 NaN 102580 35 0 19199 0.261 -1 HPFFKDMSL 9 42 569.2735448636703 1136.5325367941405 2 569.27294921875 MULTI HCD FTMS 0 0 0 8327 42032.3203125 0.12212905289015812 -17 0.4444427490234375 6 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 8.155526934196011 0.2891920862272901 2 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3289278619749 752.3289278619749 30.088643834802156 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 8 + NaN NaN 101498.8 NaN 5857 2474 8327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8335 43.875 NaN 1141300 35 0 133600 0.327 + 16044 LPSEHQTIL 9 76 519.285152377288 1036.555751821376 2 519.284912109375 MULTI HCD FTMS 0 0 0 8334 489867.96875 0.7373776131276549 3 -0.08230972290039062 1 Unmodified _LPSEHQTIL_ ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7 59.368380827593164 0.01846506874148156 2 [{I|L}P]DTHQT{I|L}{I|L} 9 2 + 67.251 0 0 6.4879 6.4879 87.722 0 0 0 7.161450971016173 16.47817481888638 7.161450971016173 7.161450971016173 0 1.3851518780601924 1.154901959985743 1.1549471895720984 0 [{I|L}P]DTHQT{I|L}{I|L};[{I|L}T][DP]HQT{I|L}{I|L};[{I|L}P]DTH[AG]T{I|L}{I|L};[{I|L}T][DP]H[AG]T{I|L}{I|L};{I|L}PDTHQT{I|L}{I|L} 6.4879;5.797;5.5995;4.9087;3.9185 -;-;-;-;- 404 NaN NaN 259894.5 NaN 5858 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8336 43.879 NaN 215470 35 0 20662 0.261 + 26110 SPISSDQSL 9 59 467.2298472147932 932.4451414963864 2 467.2295227050781 MULTI HCD FTMS 0 0 0 8334 115390.578125 0.9089254484521215 1 -0.029712677001953125 2 Unmodified _SPISSDQSL_ ENSG00000125686|ENST00000300651|MED1 51.629811660486645 0.02929079705179888 2 {[TV]|[{I|L}S]}PSSDQS{I|L} 9 2 + 66.865 0 0 7.1709 7.1709 92.341 0 0 0 15.740312677277188 16.478174818886373 15.740312677277188 13.015384402724592 0 1 1.3979400086720375 0.3494850021680094 0.3807196863200844 {[TV]|[{I|L}S]}PSSDQS{I|L};{[TV]|[{I|L}S]}PSSD[AG]S{I|L};[PS]{I|L}SSDQS{I|L};[{I|L}P]SSSDQS{I|L};[PS]{I|L}SSD[AG]S{I|L};{[TV]|[{I|L}S]}PSSD[{I|L}T]N;[{I|L}P]SSSD[AG]S{I|L};{[TV]|[{I|L}S]}PSS[SG]{[DA]|[EG]}{I|L};[PS]{I|L}SSD[{I|L}T]N;[{I|L}P]SSSD[{I|L}T]N 7.1709;5.7751;5.4828;5.16;4.087;3.8407;3.7642;3.4469;2.1526;1.8298 -;-;+;-;-;-;-;-;-;- + 312 NaN NaN 120914.4 NaN 5859 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8337 43.883 NaN 164820 35 0 24901 0.261 -1 LPDDPRQMTL 10 40 601.2976437003749 1200.5807344675497 2 601.2977905273438 MULTI HCD FTMS 0 0 0 8334 78879.1015625 0.6533365377254731 2 -0.052703857421875 3 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 16.565877749689598 0.3561603856738253 2 {I|L}PDD 4 -1 45.433 0 0 3.7843 0 0 0 757.3666087601785 757.3666087601785 27.47425010840047 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}PDD 3.7843 + + 22 + NaN NaN 109473 NaN 5860 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8338 43.886 NaN 200150 35 0 48423 0.261 -1 RYKLYQEMF 9 48 647.318434432198 1292.622315931196 2 647.3184204101562 MULTI HCD FTMS 0 0 0 8334 75008.5078125 0.8111657309185191 -4 0.10245132446289062 4 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 29.84058131909904 0.11198220037953927 2 [YR]K{I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 65.099 0 0 5.0362 5.0362 87.002 0 0 0 5.6424927368725974 58.10911268361153 5.6424927368725974 9.208187539523749 0 1.3494850021680094 0 0 0 [YR]K{I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]K{I|L}Y[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]K{I|L}YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E;[YR]K{I|L}Y[AG]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 5.0362;4.3238;3.6646;2.9522 +;-;-;- + 69 NaN NaN 114067 NaN 5861 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8339 43.889 NaN 197020 35 0 27190 0.264 + 25696 SIPHSDLLD 9 47 498.7535116604668 995.4924703877336 2 498.7536315917969 MULTI HCD FTMS 0 0 0 8334 67314.6640625 0.5016168122391499 -3 0.07520294189453125 5 Unmodified _SIPHSDLLD_ ENSG00000130227|ENST00000252512|XPO7;XPO7|p.P884L|1|0.05|ENSG00000130227|chr8:21999543-21999543|C/T|missense_variant;XPO7|p.P884S|1|0.05|ENSG00000130227|chr8:21999542-21999542|C/T|missense_variant 32.30548876998284 0.10066689432505688 2 E{I|L}D{I|L} 4 6 37.167 0 0 3.7335 0 0 507.2481861798844 0 507.2481861798844 0 4.191293077419758 0 0 0 1 0 0 0 E{I|L}D{I|L} 3.7335 - 47 NaN NaN 106235 NaN 5862 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8340 43.893 NaN 154430 35 0 35378 0.261 -1 IMAHCSLDL 9 31 538.2478988671777 1074.4812448011553 2 538.2479248046875 MULTI HCD FTMS 0 0 0 8334 59274.70703125 0.7098755353892555 -7 0.17814254760742188 6 Carbamidomethyl (C),Oxidation (M) _IM(Oxidation (M))AHC(Carbamidomethyl (C))SLDL_ AluJb_dup56968|chr8:98045693-98046014:+|1.2447364525238482|0.0002169198745066|12.49|522.0|19|2|anti-sense;ENST00000398831.7_1_22:22050099-22050438:+|nuORF 6.723162845929126 0.3000504726104499 2 {I|L}D{I|L} 3 -1 30.005 0 0 2.7925 0 0 715.2734242169937 0 715.2734242169937 0 25.400990676322905 0 0 0 0.3807196863200844 0 0 0 {I|L}D{I|L} 2.7925 + + 15 NaN NaN 115925.9 NaN 5863 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8341 43.896 NaN 68672 35 0 9851.6 0.261 + 35385 YYDPHQATF 9 32 571.2513850043473 1140.4882170754945 2 571.2505493164062 MULTI HCD FTMS 0 0 0 8334 19827.193359375 0.560394880558849 -1 0.023044586181640625 7 Unmodified _YYDPHQATF_ ENSG00000100731|ENST00000304743|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF;nc|ENSG00000100731|Q96RV3-2|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;nc|ENSG00000100731|Q96RV3-4|PCNX1 27.223235318498237 0.1251536255799991 2 YYDP[HQ]AT{M(Oxidation (M))|F} 9 0 + 67.853 0 0 5.9495 5.9495 93.484 0 0 0 17.408037477650637 58.389399919613965 17.408037477650637 67.85335007137462 0 1.5 2 0 0 + + YYDP[HQ]AT{M(Oxidation (M))|F} 5.9495 + + 37 NaN NaN 100047.6 NaN 5864 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8342 43.899 NaN 79978 35 0 10405 0.263 + 34017 YMENMEQVFE 10 33 440.51386767371133 1318.519773621334 3 440.513916015625 MULTI HCD FTMS 0 0 0 8334 19279.8828125 0.45763637970231313 -2 0.046001434326171875 8 Unmodified _YMENMEQVFE_ ENSG00000100266|ENST00000263246|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99894.1 NaN 5865 2475 8334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8344 43.904 NaN 401540 35 0 31459 0.327 + 21170 PPRRMQSQQE 10 88 419.5453418135208 1255.6141960407624 3 419.55584716796875 MULTI HCD FTMS 0 0 0 8343 5328.95263671875 1 0 0 1 Unmodified _PPRRMQSQQE_ nc|ENSG00000152229|Q9H939-2|PSTPIP2 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F}Q[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 9 + 42.829 0 0 3.411 3.411 81.497 0 0 0 26.630937864725155 16.532125137753436 16.532125137753436 2.4865124202832334 0 0.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}Q[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};QM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};Q{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};{M(Oxidation (M))|F}Q[KP]{M(Oxidation (M))|F}K[WE]{M(Oxidation (M))|F};{M(Oxidation (M))|F}[AG][KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};QM[Q{I|L}]{M(Oxidation (M))|F}K[WE]{M(Oxidation (M))|F};Q{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}K[WE]{M(Oxidation (M))|F} 3.411;3.213;2.9732;2.8359;2.6811;2.6379;2.3981 -;-;-;-;-;-;- 108 + NaN NaN 142767.5 NaN 5866 2476 8343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8345 43.909 NaN 116900 35 0 34187 0.261 + 13403 KYPDRVPVI 9 33 543.8189755008225 1085.6233980684449 2 543.8189697265625 MULTI HCD FTMS 0 0 0 8343 60887.3046875 0.055850106764511874 13 -0.38979339599609375 2 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 20.41453444215458 0.18397929046831515 2 KY 2 7 25.217 0 0 2.3228 0 0 0 791.4421259528237 791.4421259528237 25.21652514092061 0 0 0 0 0.4247425010840047 0 0 0 + KY 2.3228 + + 13 + NaN NaN 105794.4 NaN 5867 2476 8343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8346 43.912 NaN 483170 35 0 74658 0.261 + -1 MPEVKVETI 9 81 531.2809748085936 1060.547396683987 2 531.8007202148438 MULTI HCD FTMS 0 0 0 8343 51461.41796875 0.6057090324929931 -6 0.15851211547851562 3 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 31.26834338654808 0.10542797264966089 2 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 9 -1 + 28.131 0 0 2.6525 2.6525 81.351 0 0 0 3.126167147517286 3.126167147517286 3.126167147517286 3.126167147517286 0 1.6549471895720984 0 0.2742275032520141 0 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RV]V[HC]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[{I|L}A]V[HC]T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVEA[VS]T{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VEVPE;[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VE[DP]{I|L} 2.6525;2.3577;2.2515;1.7203;0.74142;0.55866 -;-;-;-;-;- 431 + NaN NaN 167683.6 NaN 5868 2476 8343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8347 43.916 NaN 33886 35 0 2949.7 0.261 -1 TMEAIGELHGV 11 31 586.7841050865136 NaN 0 586.7836303710938 PEAK HCD FTMS 0 0 0 8343 13699.408203125 0.5024697256147772 5 -0.15500259399414062 4 Oxidation (M) _TM(Oxidation (M))EAIGELHGV_ ENSG00000169856|ENST00000305901|ONECUT1 2.9952420565917617 0.33362350433860827 2 Y 1 -1 6.9897 0 0 0.59662 0 0 648.2785240384584 357.18842493228755 1005.466948970746 0 0 0 0 0 0 0 0 0 Y 0.59662 - 1 + NaN NaN 85889.4 NaN 5869 2476 8343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8348 43.919 NaN 87461 35 0 13342 0.262 + 17782 MESSVLPGE 9 39 474.7207865267999 947.4270201203998 2 474.7208557128906 MULTI HCD FTMS 0 0 0 8343 15724.435546875 0.4891244696713656 4 -0.12530899047851562 5 Unmodified _MESSVLPGE_ REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF 11.640296217721598 0.25978676193971967 2 E 1 -1 12.474 0 0 1.3166 0 0 434.1477554271084 381.22471033267817 815.3724657597866 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 E 1.3166 + + 6 + NaN NaN 97639.2 NaN 5870 2476 8343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8349 43.922 NaN 103620 35 0 31618 0.261 -1 MHCDGGISMIL 11 35 617.7667228794581 1233.5188928257162 2 617.7681884765625 MULTI HCD FTMS 0 0 0 8343 47363.39453125 0.7064147784997336 -3 0.075714111328125 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 8.745405648335112 0.3805662881914433 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 30.445 0 0 2.4682 0 0 842.3019276349625 0 842.3019276349625 0 26.95046257204389 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.4682 + + 5 NaN NaN 103998.7 NaN 5871 2476 8343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8351 43.927 NaN 164050 35 0 47016 0.327 + 10510 IPENNPVKL 9 32 512.2953716635819 1022.5761903939639 2 512.2955322265625 MULTI HCD FTMS 0 0 0 8350 96875.2421875 0.7257089719995257 4 -0.13201141357421875 1 Unmodified _IPENNPVKL_ ENSG00000158769|ENST00000368026|F11R;nc|ENSG00000158769|Q9Y624-2|F11R 22.65808497894818 0.16459551161911185 2 {I|L}PE{NN|[MP]|[D{I|L}]|[EV]}[VP]K{I|L} 9 0 + 32.214 0 0 3.1503 3.1503 88.633 0 0 0 22.749993389021704 5.787268505095049 5.787268505095049 32.21394354078236 0 1.305462187404089 0 0.3807196863200844 0 + + {I|L}PE{NN|[MP]|[D{I|L}]|[EV]}[VP]K{I|L} 3.1503 + + 39 + NaN NaN 124125.6 NaN 5872 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8352 43.932 NaN 254320 35 0 19519 0.261 + 24368 RYIKALETL 9 63 553.8319253035388 1105.6492976738775 2 553.83203125 MULTI HCD FTMS 0 0 0 8350 174695.6875 0.5079658764699425 -2 0.052703857421875 2 Unmodified _RYIKALETL_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 43.77239144664712 0.04802738721622131 2 {I|L}{M(Oxidation (M))|F}T{I|L}AK{I|L} 7 6 72.057 0 0 6.5172 0 0 0 316.14032922916255 316.14032922916255 43.15630099269626 0 0 0 0 0.4247425010840047 2 0.75 0 {I|L}{M(Oxidation (M))|F}T{I|L}AK{I|L} 6.5172 - 337 + NaN NaN 136826 NaN 5873 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8353 43.935 NaN 141660 35 0 11605 0.261 -1 VYCLPFSQL 9 55 563.7813444047663 NaN 0 563.7939453125 PEAK HCD FTMS 0 0 0 8350 13684.205078125 0.9395786460989581 -1 0.022991180419921875 3 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))LPFSQL_ ENST00000563259.5_1_16:71841975-71842083:-|nuORF 10.073929032068715 0.24642998803896465 2 M{M(Oxidation (M))|F}E{I|L}SQ 6 -1 20.099 0 0 1.7857 0 0 131.07189183511997 256.1661471002563 387.23803893537627 0 0 0 0 0 0 0 0 0 M{M(Oxidation (M))|F}E{I|L}SQ 1.7857 - 104 + NaN NaN 118852.8 NaN 5874 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8354 43.939 NaN 108630 35 0 12755 0.261 -1 YPESESIMM 9 34 559.7224742459309 1117.4303955586618 2 559.7225341796875 MULTI HCD FTMS 0 0 0 8350 65271.11328125 0.5192083800668588 17 -0.5152015686035156 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 39.957323273324995 0.06554068735427583 2 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 53.175 0 0 4.7587 0 0 605.2323837307302 0 605.2323837307302 0 41.74865027867405 0 0 0 1.4247425010840047 0 0.8494850021680094 0 S{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7587 + + 79 NaN NaN 106769.1 NaN 5875 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8355 43.942 NaN 151860 35 0 14964 0.261 + 381 AILRQWVP 8 46 491.7958717665943 981.5771905999886 2 491.79583740234375 MULTI HCD FTMS 0 0 0 8350 19632.91015625 0.5263785451434385 1 -0.029605865478515625 5 Unmodified _AILRQWVP_ ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4 2.302733041254933 0.5385759549224092 2 V{M(Oxidation (M))|F} 2 7 16.454 0 0 1.6762 0 0 717.4629155529168 0 717.4629155529168 0 5.026975159433533 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6762 - 20 + NaN NaN 101026.6 NaN 5876 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8356 43.945 NaN 65303 35 0 7905.5 0.261 + 23056 REAGGALMSP 10 40 494.74551561456406 NaN 0 494.7582702636719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _REAGGALMSP_ ENSG00000183186|ENST00000332235|C2CD4C 4.897010918128616 0.3359931263921593 2 A 1 9 6.9897 0 0 0.70783 0 0 131.06838091648393 782.3477783025861 913.4161592190701 0 0 0 0 0 0 0 0 0 + A 0.70783 + + 21 + NaN NaN 107236.8 NaN 5877 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8357 43.949 NaN 59679 35 0 12201 0.261 -1 RADQFEYVM 9 39 587.7632932514695 1173.5120335697388 2 587.7635498046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 13.90604991867851 0.24021115267848145 2 YV{M(Oxidation (M))|F} 3 -1 39.45 0 0 3.3617 0 0 746.33598525215 0 746.33598525215 0 34.846368802282015 0 0 0 1.3252574989159953 0 0 0 YV{M(Oxidation (M))|F} 3.3617 + + 28 NaN NaN 98393.9 NaN 5878 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8358 43.952 NaN 56986 35 0 6731.4 0.261 + 35232 YVNFMNYYI 9 22 613.7792280149794 1225.5439030967586 2 613.7792358398438 MULTI HCD FTMS 0 0 0 8350 11559.69921875 0.3481738387265704 -4 0.09870529174804688 8 Unmodified _YVNFMNYYI_ ENST00000519225.5_3_1:242012233-242012323:+|nuORF 1.844237919475145 0.33703635659052655 2 Y{I|L} 2 7 20.969 0 0 1.711 0 0 931.3818083862175 0 931.3818083862175 0 20.969100130080562 0 0 0 0 0 0 0 + Y{I|L} 1.711 + + 1 NaN NaN 99964.7 NaN 5879 2477 8350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8360 43.957 NaN 2423300 35 0 394190 0.327 + 20167 NYKKFYEQF 9 85 422.8766604855716 1265.6081520569148 3 422.876708984375 MULTI HCD FTMS 0 0 0 8359 1165773.875 0.9576045344716198 1 -0.0396575927734375 1 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 53.40400417844725 0.026808823219830042 2 N[YE]Q{M(Oxidation (M))|F} 5 4 36.382 0 0 2.8747 0 0 566.3221302716812 0 566.3221302716812 0 16.64529359632112 0 0 0 0.8494850021680094 0 0 0.805462187404089 N[YE]Q{M(Oxidation (M))|F} 2.8747 - 246 NaN NaN 456756 NaN 5880 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8361 43.961 NaN 801650 35 0 252780 0.261 + 24830 RYPSLWRRL 9 62 416.2436918347977 1245.7092461045931 3 416.2438049316406 MULTI HCD FTMS 0 0 0 8359 277905.5625 0.2020093035815954 17 -0.5051345825195312 2 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 21.799462835604743 0.17201381643045974 2 {I|L}R 2 7 22.831 0 0 1.8328 0 0 0 973.501026189419 973.501026189419 1.7777188578207834 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.8328 - 58 + NaN NaN 215217.5 NaN 5881 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8362 43.965 NaN 252870 35 0 25894 0.261 + 4937 FANVEEHSF 9 62 540.243382129455 1078.4722113257098 2 540.2433471679688 MULTI HCD FTMS 0 0 0 8359 83760.2890625 0.5418451158208334 -1 0.029605865478515625 3 Unmodified _FANVEEHSF_ ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6;RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant 83.42873516780209 0.004742894019233849 2 {M(Oxidation (M))|F}ANVEEHS{M(Oxidation (M))|F} 9 0 + 80.968 0 0 7.5077 7.5077 88.686 0 0 0 6.311508337315189 5.030834337684311 5.030834337684311 5.030834337684311 0 2.110924374808178 0 1.7312958898387063 0.3494850021680094 + + {M(Oxidation (M))|F}ANVEEHS{M(Oxidation (M))|F};{M(Oxidation (M))|F}ANVEEG[WQ];{M(Oxidation (M))|F}AGGVEEHS{M(Oxidation (M))|F};{M(Oxidation (M))|F}AGGVEEG[WQ];{[MS]|[{M(Oxidation (M))|F}A]}NVEWNAE;{[MS]|[{M(Oxidation (M))|F}A]}N[WE]VNAE;{[MS]|[{M(Oxidation (M))|F}A]}NGEEV[WQ];{M(Oxidation (M))|F}ANGEEV[WQ];{[MS]|[{M(Oxidation (M))|F}A]}GGVEWNAE;{[MS]|[{M(Oxidation (M))|F}A]}NVEWGGAE 7.5077;7.0412;6.3298;6.1874;5.5861;5.3856;5.1796;4.8444;4.7322;4.7322 +;-;-;-;-;-;-;-;-;- + 953 + NaN NaN 147875.9 NaN 5882 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8363 43.968 NaN 72868 35 0 13307 0.261 + 7270 FTDSKRYE 8 35 523.2510053560947 1044.4874577789892 2 523.2508544921875 MULTI HCD FTMS 0 0 0 8359 26247.953125 0.24903794181367722 9 -0.2776679992675781 4 Unmodified _FTDSKRYE_ ENSG00000139146|ENST00000337682|SINHCAF;ENST00000591086.1_1_18:57684440-57684650:-|nuORF 19.256988751693697 0.45210759540527456 2 AD{[ET]|[MV]} 4 6 29.693 0 0 2.8428 0 0 610.30864150215 0 610.30864150215 0 8.723637474483468 0 0 0 0.9247425010840047 0 0.4247425010840047 0 AD{[ET]|[MV]} 2.8428 - 20 NaN NaN 115511.2 NaN 5883 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8364 43.971 NaN 129620 35 0 11529 0.261 -1 PYLQCVLWI 9 39 596.3167465294707 1190.6189401257413 2 596.3168334960938 MULTI HCD FTMS 0 0 0 8359 26119.23046875 0.6449335156033057 2 -0.07271194458007812 5 Carbamidomethyl (C) _PYLQC(Carbamidomethyl (C))VLWI_ ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 12.531546534597751 0.2520865569484384 2 {I|L}{[QN]|[E{I|L}]|[KN]} 3 -1 18.952 0 0 1.5918 0 0 817.4211292951187 0 817.4211292951187 0 18.952424927286845 0 0 0 0.8494850021680094 0 0 0 {I|L}{[QN]|[E{I|L}]|[KN]} 1.5918 - 6 NaN NaN 114930.5 NaN 5884 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8365 43.975 NaN 115110 35 0 10417 0.262 + 8178 GPSEVEQQL 9 44 493.74322362238496 985.4718943115699 2 493.74298095703125 MULTI HCD FTMS 0 0 0 8359 50473.44921875 0.7412992365902447 -2 0.0525970458984375 6 Unmodified _GPSEVEQQL_ ENSG00000167110|ENST00000611957|GOLGA2;ENST00000570077.1_1_15:62538426-62538813:-|nuORF;nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2 49.55428908609986 0.03219431099695407 2 VEQQ{I|L} 5 4 53.756 0 0 5.4548 0 0 370.148241111525 0 370.148241111525 0 28.349621957594096 0 0 0 1.7302046884880937 0 0 0 + VEQQ{I|L} 5.4548 + + 64 NaN NaN 101051.1 NaN 5885 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8366 43.978 NaN 86086 35 0 7747.4 0.261 + 4103 ESSSPSPCTSL 11 42 547.7369961677302 1093.4594394022604 2 547.7455444335938 MULTI HCD FTMS 0 0 0 8359 20196.3671875 0.10570534536078764 11 -0.33719635009765625 7 Unmodified _ESSSPSPCTSL_ REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF 7.608950283845883 0.38555039536024605 2 TS{I|L} 3 -1 24.966 0 0 2.2832 0 0 774.2845728150734 0 774.2845728150734 0 3.9967468446879195 0 0 0 0.805462187404089 0 0 0 TS{I|L} 2.2832 + + 15 NaN NaN 115786.6 NaN 5886 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8367 43.981 NaN 27140 35 0 6520.9 0.261 + -1 AYVPWNTTCK 10 21 641.302001953125 NaN 0 641.302001953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))AYVPWNTTC(Carbamidomethyl (C))K_ REV__ENST00000433529.6_1_2:70441543-70441591:-|nuORF 1.4819007175156935 0.33891598740166873 2 E 1 -1 6.9897 0 0 0.54625 0 0 524.2593042951188 623.2598971002561 1147.519201395375 0 0 0 0 0 0 0 0 0 E 0.54625 - 4 + NaN NaN 92260.1 NaN 5887 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8368 43.985 NaN 28276 35 0 5357.5 0.261 -1 RYALQMEQL 9 19 584.2943725585938 NaN 0 584.2943725585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 3.5964929083625545 0.27781873954207675 2 Q 1 -1 6.9897 0 0 0.59916 0 0 535.2317920880874 500.2632235162719 1035.4950156043594 0 0 0 0 0 0 0 0 0 Q 0.59916 + + 2 + NaN NaN 94242.3 NaN 5888 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8369 43.988 NaN 71471 35 0 9709.8 0.264 + 24181 RYFDPANGKF 10 36 405.5366247218027 1213.5880447656082 3 405.53643798828125 MULTI HCD FTMS 0 0 0 8359 27100.794921875 0.036189192714234195 27 -0.7676887512207031 10 Unmodified _RYFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 7.101721422024254 0.4377131641736035 2 AP 2 9 13.583 0 0 1.1193 0 0 464.23912763456013 578.2334078424436 1042.4725354770037 0 0 0 0 0 0.5 0 0 0 AP 1.1193 - 12 + NaN NaN 99149.6 NaN 5889 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8370 43.991 NaN 47573 35 0 3546 0.261 -1 RPMKMMFQC 9 27 622.7723067511062 NaN 0 622.7723388671875 PEAK HCD FTMS 0 0 0 8359 14197.462890625 0.7185376987343474 1 -0.0396575927734375 11 Carbamidomethyl (C),Oxidation (M) _RPM(Oxidation (M))KMMFQC(Carbamidomethyl (C))_ CACNB2|p.A110Qfs*51|1|0.24|ENSG00000165995|chr10:18402038-18402038|G/-|frameshift_variant;ENST00000324631.11_1_10:18439815-18789762:+|nuORF;ENST00000377328.5_1_10:18439815-18825042:+|nuORF;ENST00000498816.1_1_10:18787314-18787410:+|nuORF 0.5247636613948944 0.2927039108006614 2 T 1 -1 3.0989 0 0 0.24921 0 0 647.5978839106123 491.8622225397094 1139.4601064503217 0 0 0 0 0 0 0 0 0 T 0.24921 - 2 + NaN NaN 94309.6 NaN 5890 2478 8359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8372 43.997 NaN 380260 35 0 23488 0.327 + 20171 NYKKFYEQF 9 77 633.8115012324201 1265.6084495316402 2 633.8113403320312 MULTI HCD FTMS 0 0 0 8371 282064.0625 0.6547103742295354 1 -0.033054351806640625 1 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 92.20098385977256 0.0044682926920227755 2 NYKK{M(Oxidation (M))|F}YEQ{M(Oxidation (M))|F} 9 0 + 77.56 0 0 6.1282 6.1282 87.77 0 0 0 29.20818753952375 8.992887666437142 8.992887666437142 8.992887666437142 0 1.7231975075880328 2 0.2742275032520141 0.7742275032520141 + + NYKK{M(Oxidation (M))|F}YEQ{M(Oxidation (M))|F};NYKK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}QE 6.1282;5.4177 +;- + 485 + NaN NaN 148845.4 NaN 5891 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8373 44.001 NaN 930400 35 0 212810 0.264 -1 RYKLYQEMF 9 53 431.88120739171455 1292.6217927753437 3 431.88116455078125 MULTI HCD FTMS 0 0 0 8371 306764.25 0.8871440043653844 1 -0.033054351806640625 2 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 13.614867670302875 0.2427269026982664 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.2212 0 0 980.5071531548584 0 980.5071531548584 0 3.9241661558131753 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2212 + + 25 NaN NaN 241499.9 NaN 5892 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8374 44.005 NaN 774740 35 0 141710 0.261 + 35383 YYDNKYIDR 9 85 417.20079151157404 1248.5805451349222 3 417.18896484375 MULTI HCD FTMS 0 0 0 8371 21730.060546875 0.5976730923550664 1 -0.033054351806640625 3 Unmodified _YYDNKYIDR_ REV__ENSG00000047936|ENST00000368507|ROS1;REV__nc|ENSG00000047936|P08922|ROS1 4.897010918128616 0.31389406404703984 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3607 0 0 1083.5016552196862 0 1083.5016552196862 0 3.4948500216800937 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3607 - 77 + NaN NaN 199501.8 NaN 5893 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8375 44.008 NaN 454850 35 0 70818 0.261 + 24669 RYLSPKYIKMF 11 66 487.93560805191515 1460.7849947559455 3 487.9355163574219 MULTI HCD FTMS 0 0 0 8371 164869.96875 0.40316432519572715 18 -0.5279960632324219 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 62.89396527753397 0.028470468683076657 2 [Y{I|L}]RSPKY{I|L}KET 11 4 75.086 0 0 5.1401 0 0 0 78.98827290643717 78.98827290643717 57.611626443311906 0 0 0 0 2.742992819099939 1.3010299956639813 1.274227503252014 0 [Y{I|L}]RSPKY{I|L}KET 5.1401 - 283 NaN NaN 177109.4 NaN 5894 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8376 44.011 NaN 746230 35 0 125070 0.261 + 28551 TPSVHEPVL 9 73 489.7664005269314 977.5182481206629 2 489.7663879394531 MULTI HCD FTMS 0 0 0 8371 356797.875 0.6537232778655386 -2 0.06926345825195312 5 Unmodified _TPSVHEPVL_ ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF 112.59319219568356 0.00251905749371435 2 [VP][HS]TEPV{I|L} 9 3 + 70.014 0 0 7.1624 7.1624 87.132 0 0 0 10.703168625674095 10.703168625674095 10.703168625674095 2.7815125038364386 0 1.2614393726401687 1.5228787452803376 1.6307196863200843 0 [VP][HS]TEPV{I|L};[VP]N[NP]EPV{I|L};[VP][HS]ETPV{I|L};TP[VS]HEPV{I|L};[VP]GG[NP]EPV{I|L};[VP][HS]TEVP{I|L};[VP]N[NP]EVP{I|L};[VP][HS]ETVP{I|L};[DV][HT]PTPV{I|L};[VP]GG[NP]EVP{I|L} 7.1624;6.8779;6.0813;6.0675;5.9359;5.464;5.1795;4.3829;4.3739;4.2375 -;-;-;+;-;-;-;-;-;- + 309 NaN NaN 200837.9 NaN 5895 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8377 44.015 NaN 311570 35 0 32369 0.261 + 28742 TTAENEFVM 9 56 529.2290965144389 1056.4436400956777 2 529.2291259765625 MULTI HCD FTMS 0 0 0 8371 132287.421875 0.8352027348703267 -2 0.06926345825195312 6 Oxidation (M) _TTAENEFVM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant 78.7280429016045 0.006263961847259105 2 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 6 40.191 0 0 3.8043 0 0 411.1818025619943 0 411.1818025619943 0 13.402595205268941 0 0 0 0.5 0 1.024227503252014 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.8043 - 177 NaN NaN 146848.6 NaN 5896 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8378 44.018 NaN 84019 35 0 11924 0.261 + 14068 KYVSGEFRF 9 36 566.7931323113675 1131.5717116895348 2 566.7930297851562 MULTI HCD FTMS 0 0 0 8371 64234.53515625 0.9542833601693426 1 -0.033054351806640625 7 Unmodified _KYVSGEFRF_ ENSG00000124784|ENST00000379834|RIOK1 18.373094154950223 0.20161688160436167 2 KYVSW 5 5 46.454 0 0 4.1052 0 0 0 465.22556635163073 465.22556635163073 46.453650195120844 0 0 0 0 0.8494850021680094 0 0 0 KYVSW 4.1052 - 20 + NaN NaN 106929.3 NaN 5897 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8379 44.021 NaN 79919 35 0 9434.4 0.261 -1 FMYTDVNL 8 39 509.729494666859 1017.444436400518 2 509.7285461425781 MULTI HCD FTMS 0 0 0 8371 20627.7578125 0.6195658550344024 1 -0.033054351806640625 8 Oxidation (M) _FM(Oxidation (M))YTDVNL_ ENST00000292841.9_1_19:37641769-37641946:-|nuORF 7.289230182591677 0.5311777711368266 2 VN{I|L} 3 -1 28.188 0 0 2.7704 0 0 673.2372744726589 0 673.2372744726589 0 22.703037561203843 0 0 0 0.5 0 0 0 VN{I|L} 2.7704 + + 35 NaN NaN 111607.9 NaN 5898 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8380 44.025 NaN 58719 35 0 5625.7 0.261 -1 ACTNGCLI 8 40 454.7023163242129 NaN 0 454.70245361328125 PEAK HCD FTMS 0 0 0 8371 22045.81640625 0.5606040152657698 5 -0.14886856079101562 9 2 Carbamidomethyl (C) _AC(Carbamidomethyl (C))TNGC(Carbamidomethyl (C))LI_ ENST00000556808.1_1_X:53114333-53114504:+|nuORF 7.289230182591677 0.38822285293237185 2 P 1 -1 4.6041 0 0 0.5074 0 0 71.0375864174227 736.2735689752561 807.3111553926789 0 0 0 0 0 0 0 0 0 P 0.5074 - 2 + NaN NaN 96044.7 NaN 5899 2479 8371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8382 44.03 NaN 647920 35 0 90220 0.327 + 901 AYAPPPHVI 9 57 482.76608329503614 963.5176136568723 2 483.2506103515625 MULTI HCD FTMS 0 0 0 8381 114952.25 0.8945667212688474 1 -0.029693603515625 1 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 28.173230860318316 0.11963627304438548 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4 5 47.435 0 0 4.9231 0 0 0 558.3041359498195 558.3041359498195 13.332975692131882 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4.9231 + + 192 + NaN NaN 176719.1 NaN 5900 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8383 44.034 NaN 424900 35 0 86022 0.261 + 15997 LPQSKETLL 9 79 514.8029592556205 1027.591365578041 2 514.8029174804688 MULTI HCD FTMS 0 0 0 8381 225722.640625 0.7679510106095128 2 -0.056118011474609375 2 Unmodified _LPQSKETLL_ ENSG00000148297|ENST00000343730|MED22;ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22 121.5340881639634 0.001118397630175091 2 {I|L}PQSK 5 4 82.585 0 0 8.0367 0 0 0 471.24228845767817 471.24228845767817 36.96985865230462 0 0 0 0 1.305462187404089 1.6989700043360187 1.1747425010840047 0.7059771852360797 + {I|L}PQSK 8.0367 + + 454 + NaN NaN 151984.9 NaN 5901 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8384 44.038 NaN 506590 35 0 38843 0.261 + 30540 VMSQALKATF 10 78 556.2941079331289 1110.5736629330577 2 556.2942504882812 MULTI HCD FTMS 0 0 0 8381 267406.625 0.9209605571776651 -3 0.10231781005859375 3 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 157.4881802720041 2.0905164149367524E-08 2 V{M(Oxidation (M))|F}SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 + 120.53 0 0 10.853 10.853 93.83 0 0 0 94.42593794827836 16.53212513775344 16.53212513775344 9.164539485499262 0 3.579689690656103 0 1.892159058960253 0.6989700043360187 + + V{M(Oxidation (M))|F}SQA{I|L}KAT{M(Oxidation (M))|F};V{M(Oxidation (M))|F}S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S[AG]A{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TA]N{I|L}KAT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SQA{I|L}K[YG]V;[{M(Oxidation (M))|F}V]S[AG]A{I|L}[TA]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TA]GG{I|L}KAT{M(Oxidation (M))|F};V{[QG]|[NA]}[{M(Oxidation (M))|F}T]{I|L}KAT{M(Oxidation (M))|F} 10.853;10.028;9.3657;8.5405;6.8581;6.7455;6.3147;6.0328;5.9203;5.698 +;-;+;-;-;-;-;-;-;- + 1644 + NaN NaN 169559.6 NaN 5902 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8385 44.041 NaN 367950 35 0 75854 0.261 -1 HPFFKDMSL 9 45 569.2735448636703 1136.5325367941405 2 569.2733764648438 MULTI HCD FTMS 0 0 0 8381 149598.3125 0.43467265389480514 -11 0.3134613037109375 4 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 16.149105407346934 0.22083165093524068 2 HP{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.745 0 0 0 752.3291858717232 752.3291858717232 19.503187623076954 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.745 + + 28 + NaN NaN 150945.2 NaN 5903 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8386 44.044 NaN 302530 35 0 21593 0.261 + 19004 NATNVEQSF 9 68 505.232370920617 1008.450188908034 2 505.2328186035156 MULTI HCD FTMS 0 0 0 8381 110902.6640625 0.9606501692425817 -3 0.10231781005859375 5 Unmodified _NATNVEQSF_ ENSG00000138069|ENST00000409784|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;nc|ENSG00000138069|P62820-3|RAB1A 78.06048673739656 0.006479972202176041 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KNEQS{M(Oxidation (M))|F} 8 3 + 71.719 0 0 7.1118 7.1118 91.214 0 0 0 8.869638510539914 57.550179335456306 8.869638510539914 9.262137858390815 0 1.8252574989159953 0 1.4049471895720984 1.274227503252014 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KNEQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KNE[AG]S{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KGGEQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KENQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KGGE[AG]S{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KEN[AG]S{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KEGGQS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KEGG[AG]S{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QP]HHS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ES]|[DT]|[{I|L}C]}[WP]S{M(Oxidation (M))|F} 7.1118;6.1934;6.1934;5.6921;5.2803;4.7736;4.7736;3.8605;3.6348;3.3477 -;-;-;-;-;-;-;-;-;- 414 NaN NaN 145165.7 NaN 5904 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8387 44.048 NaN 158820 35 0 38236 0.261 -1 RYKLYQEMF 9 38 647.318434432198 1292.622315931196 2 647.3182373046875 MULTI HCD FTMS 0 0 0 8381 75740.296875 0.8190795293271586 1 -0.029693603515625 6 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 20.41453444215458 0.18397929046831515 2 {I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 52.964 0 0 4.0974 0 0 447.25862319160314 0 447.25862319160314 0 47.47933455448525 0 0 0 0.8807196863200843 0 0 0 {I|L}YQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0974 + + 42 NaN NaN 134615.9 NaN 5905 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8388 44.051 NaN 196630 35 0 10814 0.262 + 20356 NYSRNFSSF 9 80 561.2551334450851 1120.4957139569701 2 561.2539672851562 MULTI HCD FTMS 0 0 0 8381 59928.96484375 0.9960151771119679 -2 0.07271194458007812 7 Unmodified _NYSRNFSSF_ ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant 41.95555342248728 0.056367691549927025 2 [YN]{I|L}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}SS{M(Oxidation (M))|F} 9 3 + 44.877 0 0 4.0051 4.0051 88.625 0 0 0 11.399699876253777 12.998329938818841 11.399699876253777 21.444447460389654 0 1.5501648626366045 2 0.3054621874040891 0 [YN]{I|L}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}SS{M(Oxidation (M))|F};[YN]S[YV]T{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};[YN][HQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}SS{M(Oxidation (M))|F};[YN][HQ]T{I|L}S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN][HQ]TYA[QP];{[QN]|[E{I|L}]|[KN]}[HD]{[WT]|[RM]}SS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[WT]|[RM]}SS{M(Oxidation (M))|F};[YN]S[YV]{[CP]|[EA]}[Y{I|L}];[YN]S[YV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]} 4.0051;2.0913;1.6388;1.6168;1.6149;1.4781;1.2247;1.2247;1.0213;0.59546 -;-;-;-;-;-;-;-;-;- 468 NaN NaN 123237.1 NaN 5906 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8389 44.054 NaN 77259 35 0 8825.6 0.261 + 23956 RVFPEKGYSF 10 42 615.3198111852256 1228.625069437251 2 615.3201293945312 MULTI HCD FTMS 0 0 0 8381 27088.05078125 0.46128477010267077 -1 0.033054351806640625 8 Unmodified _RVFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 14.957161354070239 0.3712077760547347 2 KG[HM]E 5 8 20.502 0 0 1.6687 0 0 628.333787986525 0 628.333787986525 0 9.559771852360795 0 0 0 0.3054621874040891 0 0 0 KG[HM]E 1.6687 - 17 NaN NaN 95112.4 NaN 5907 2480 8381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8391 44.059 NaN 472460 35 0 43431 0.327 + 4860 FADQEVRSL 9 81 532.7718984951418 1063.5292440570836 2 532.7721557617188 MULTI HCD FTMS 0 0 0 8390 183258.609375 0.7910860633277541 -1 0.029693603515625 1 Unmodified _FADQEVRSL_ ENSG00000011405|ENST00000691414|PIK3C2A 117.83759599426817 0.001662893820975323 2 {M(Oxidation (M))|F}ADQEVRS{I|L} 9 0 + 79.126 0 0 7.44 7.44 89.549 0 0 0 67.6727437142231 5.0743832831149405 5.0743832831149405 7.512262311882765 0 2.2346368802282015 0 0.8296896906561032 0.6421590589602533 + + {M(Oxidation (M))|F}ADQEVRS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DQEVRS{I|L};{M(Oxidation (M))|F}AD[AG]EVRS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}D[AG]EVRS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DT{[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}A]AE;{[MS]|[{M(Oxidation (M))|F}A]}DQ{[TV]|[{I|L}S]}[RD]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DQ{[TV]|[{I|L}S]}[RV]E;{[MS]|[{M(Oxidation (M))|F}A]}DT{[QV]|[N{I|L}]|[RA]|[KV]}[RD]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DT{[QV]|[N{I|L}]|[RA]|[KV]}[RV]E;{[QD]|[EN]|[WG]|[KD]|[RS]}KK[KC]WE 7.44;6.7336;6.5742;5.5806;1.8292;1.7936;1.6773;1.1149;0.99858;0.8655 +;+;-;-;-;-;-;-;-;- + 330 + NaN NaN 152337.6 NaN 5908 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8392 44.064 NaN 218720 35 0 15199 0.262 -1 KMPKFKMPSF 10 68 419.55570075089355 1255.6452728528807 3 419.5558166503906 MULTI HCD FTMS 0 0 0 8390 107632.3984375 0.45599757109280037 12 -0.34698486328125 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 21.799462835604743 0.30720719660089946 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.6913 0 0 1090.566230349754 0 1090.566230349754 0 1.5443874496362042 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 26 + NaN NaN 129672 NaN 5909 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8393 44.067 NaN 138560 35 0 21622 0.261 -1 LMYRGILD 8 36 498.7635404846203 NaN 0 498.7533874511719 PEAK HCD FTMS 0 0 0 8390 4637.0869140625 1 0 0 3 Oxidation (M) _LM(Oxidation (M))YRGILD_ ENSG00000125434|ENST00000577745|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-3|SLC25A35 14.581692164780916 0.38795613832665576 2 D{I|L}R 3 -1 16.198 0 0 1.6271 0 0 131.11463639097968 477.1696871393188 608.2843235302985 0 0 0 0 0 0 0 0 0 D{I|L}R 1.6271 - 8 + NaN NaN 99818 NaN 5910 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8394 44.071 NaN 190900 35 0 47624 0.261 -1 SSGPVDPMM 9 42 468.69362779304697 935.372702652894 2 468.6934814453125 MULTI HCD FTMS 0 0 0 8390 65625.703125 0.4646379977768416 -10 0.2871665954589844 4 Oxidation (M) _SSGPVDPM(Oxidation (M))M_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 11.640296217721598 0.25978676193971967 2 D 1 -1 14.732 0 0 1.575 0 0 427.20709283719737 390.11623602354473 817.3233288607421 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.575 + + 3 + NaN NaN 120124.3 NaN 5911 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8395 44.074 NaN 89540 35 0 28944 0.261 -1 MHCDGGISMIL 11 29 617.7667228794581 1233.5188928257162 2 617.7664794921875 MULTI HCD FTMS 0 0 0 8390 42479.38671875 0.6335708590297771 2 -0.053119659423828125 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 4.897010918128616 0.3974440401582579 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 24.693 0 0 2.0018 0 0 842.2986927716812 0 842.2986927716812 0 24.69273760456403 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.0018 + + 3 NaN NaN 112300.9 NaN 5912 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8396 44.077 NaN 98493 35 0 9303.2 0.261 + 28355 TPDGTEKGDFL 11 34 590.2799903506276 1178.545427768055 2 590.2801513671875 MULTI HCD FTMS 0 0 0 8390 67249.828125 0.577159898039294 -5 0.15500259399414062 6 Unmodified _TPDGTEKGDFL_ ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF 22.774965066868997 0.25864339442684914 2 {M(Oxidation (M))|F}{I|L} 2 9 25.969 0 0 2.2035 0 0 900.3773060529312 0 900.3773060529312 0 -0.22878745280337398 -0.22878745280337398 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.2035 + + 27 NaN NaN 103255.5 NaN 5913 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8397 44.081 NaN 105300 35 0 23419 0.263 -1 WALFICWITF 10 43 452.8977676125424 1355.6714734378272 3 452.89752197265625 MULTI HCD FTMS 0 0 0 8390 33270.44140625 0.9243531468550442 1 -0.026424407958984375 7 Carbamidomethyl (C) _WALFIC(Carbamidomethyl (C))WITF_ chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|44 6.1918466704503565 0.44252927588099017 2 T{M(Oxidation (M))|F} 2 -1 35.217 0 0 2.5977 0 0 1089.5464674163668 0 1089.5464674163668 0 35.21652514092061 0 0 0 1 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.5977 + + 5 NaN NaN 115637.4 NaN 5914 2481 8390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8399 44.086 NaN 449770 35 0 33078 0.327 + 10018 IETLAEKFR 9 97 553.8134006549502 1105.6122483767003 2 553.8319702148438 MULTI HCD FTMS 0 0 0 8398 26662.0625 0.6916109786532941 -1 0.026424407958984375 1 Unmodified _IETLAEKFR_ ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196|AFDN 26.88365393820708 0.12808753336095696 2 MET{I|L}AKVTT{I|L} 10 6 + 61.476 0 0 5.5604 5.5604 83.553 0 0 0 27.06862728185633 3.5463498048791564 3.5463498048791564 0.796896906561031 0 0.4291746928241126 0 1.6549471895720984 0 MET{I|L}AKVTT{I|L};MTE{I|L}AKVTT{I|L};[Y{I|L}]RKA{I|L}E[DV];[Y{I|L}]RKA{I|L}DD{I|L};{[QN]|[E{I|L}]|[KN]}T{I|L}AKST{I|L}M;[{I|L}T]E{I|L}AKST{I|L}M;[Y{I|L}]RK[WP]{I|L}M;MT[{I|L}A]EKVTT{I|L};{[QN]|[E{I|L}]|[KN]}T{I|L}[KS]AT{I|L}M;[YR]{I|L}KA{I|L}E[DV] 5.5604;5.4883;4.778;4.3672;3.8974;3.7956;3.5599;3.4301;3.2029;3.1561 -;-;-;-;-;-;-;-;-;- 1993 + NaN NaN 154198.8 NaN 5915 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8400 44.09 NaN 430880 35 0 81627 0.262 + 902 AYAPPPHVI 9 50 482.76608329503614 963.5176136568723 2 482.76605224609375 MULTI HCD FTMS 0 0 0 8398 157338.59375 0.7910195366233231 4 -0.11580657958984375 2 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 28.173230860318316 0.11963627304438548 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4 5 47.435 0 0 4.9231 0 0 0 558.3037082111871 558.3037082111871 24.75895023531386 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4.9231 + + 189 + NaN NaN 153397.3 NaN 5916 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8401 44.094 NaN 90467 35 0 18984 0.261 + 16394 LSHLSPEIK 9 35 512.2953716635819 1022.5761903939639 2 512.2955322265625 MULTI HCD FTMS 0 0 0 8398 38846.19921875 0.2910035078577113 9 -0.2577972412109375 3 Unmodified _LSHLSPEIK_ REV__ENSG00000139780|ENST00000267273|METTL21C 10.073929032068715 0.27331982688540024 2 {I|L}P 2 -1 18.583 0 0 1.8173 0 0 0 809.4151095025999 809.4151095025999 13.098943791441968 0 0 0 0 0 0 0 0 {I|L}P 1.8173 - 9 + NaN NaN 99132.3 NaN 5917 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8402 44.097 NaN 76515 35 0 21269 0.261 + 13404 KYPDRVPVI 9 32 543.8189755008225 1085.6233980684449 2 543.8187866210938 MULTI HCD FTMS 0 0 0 8398 32134.669921875 0.029476173320372306 19 -0.5439987182617188 4 Unmodified _KYPDRVPVI_ ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 5.731851221503515 0.3075653528928475 2 KY 2 7 25.969 0 0 2.3921 0 0 0 791.4424604539172 791.4424604539172 18.979400086720375 0 0 0 0 0.5 0 0 0 + KY 2.3921 + + 19 + NaN NaN 91353.8 NaN 5918 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8403 44.101 NaN 63054 35 0 7119.5 0.261 + 25107 SAEPSPTVM 9 39 459.7155573945469 917.4165618558939 2 459.7154541015625 MULTI HCD FTMS 0 0 0 8398 24228.314453125 0.5829541476086934 1 -0.02669525146484375 5 Unmodified _SAEPSPTVM_ ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023|PXN 20.453626601364224 0.18364154288633264 2 P{[RE]|[WV]}VM 5 6 26.198 0 0 2.8556 0 0 287.1110857779793 0 287.1110857779793 0 26.197887582883936 0 0 0 1 0 0 0 P{[RE]|[WV]}VM 2.8556 - 12 + NaN NaN 95283.8 NaN 5919 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8404 44.104 NaN 41425 35 0 4908.8 0.261 -1 TTADMIYSRV 10 30 586.7841050865136 NaN 0 586.7847900390625 PEAK HCD FTMS 0 0 0 8398 16361.78515625 0.600120937790108 11 -0.3205604553222656 6 Oxidation (M) _TTADM(Oxidation (M))IYSRV_ ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 6.1918466704503565 0.33488492644783513 2 A 1 -1 6.9897 0 0 0.59662 0 0 202.0962599807046 895.3974703424436 1097.4937303231482 0 0 0 0 0 0 0 0 0 A 0.59662 + + 3 + NaN NaN 90259 NaN 5920 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8405 44.107 NaN 68975 35 0 6460.8 0.262 -1 STMSIPVAM 9 40 476.72758029779436 951.4406076623887 2 476.7276306152344 MULTI HCD FTMS 0 0 0 8398 24518.888671875 0.451614306238355 3 -0.08610153198242188 7 Oxidation (M) _STMSIPVAM(Oxidation (M))_ ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000554147.1_1_14:102384113-102391606:+|nuORF;ENST00000557071.1_3_14:102380750-102391606:+|nuORF;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C 16.942295170755138 0.21397866736869717 2 VA{M(Oxidation (M))|F} 3 -1 40.445 0 0 4.251 0 0 616.2906971662125 0 616.2906971662125 0 36.46591250700361 0 0 0 1.4247425010840047 0 0 0 VA{M(Oxidation (M))|F} 4.251 + + 15 NaN NaN 86213.2 NaN 5921 2482 8398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8407 44.112 NaN 651170 35 0 118920 0.327 + 20168 NYKKFYEQF 9 53 422.8766604855716 1265.6081520569148 3 422.8765563964844 MULTI HCD FTMS 0 0 0 8406 279748.5 0.22979450634166415 6 -0.181671142578125 1 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 14.405379775768559 0.2358970535022398 2 Q{M(Oxidation (M))|F} 2 7 30.217 0 0 2.3875 0 0 972.4723847005286 0 972.4723847005286 0 7.284700126913393 0 0 0 0.5 0 0 0.4247425010840047 + Q{M(Oxidation (M))|F} 2.3875 + + 34 NaN NaN 175799.3 NaN 5922 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8408 44.117 NaN 561710 35 0 179920 0.261 + 24831 RYPSLWRRL 9 65 416.2436918347977 1245.7092461045931 3 416.24371337890625 MULTI HCD FTMS 0 0 0 8406 207013.484375 0.1504779157149589 22 -0.6121635437011719 2 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 13.51866281300042 0.24355809131986753 2 RY{M(Oxidation (M))|F} 3 7 20.758 0 0 1.6663 0 0 0 776.4682711236936 776.4682711236936 3.7852620524320812 0 0 0 0 0.3054621874040891 0 0 0 RY{M(Oxidation (M))|F} 1.6663 - 67 + NaN NaN 180963.5 NaN 5923 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8409 44.12 NaN 110990 35 0 10636 0.261 -1 0 52 493.75712630787984 1970.9993993651194 4 493.7430114746094 MULTI HCD FTMS 0 0 0 8406 3557.1279296875 0.20447482542307915 -9 0.2608795166015625 3 NaN NaN 2 QQEV 4 -1 18.928 0 0 0.96032 0 0 1116.6197574911876 367.12461267642817 1483.7443701676157 0 0 0 0 0 0 0 0 0 QQEV 0.96032 - 56 + NaN NaN 95925.4 NaN 5924 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8410 44.124 NaN 198650 35 0 35938 0.261 + 5552 FLHFAVLYVVT 11 44 436.9165685789726 1307.7278763371178 3 436.916259765625 MULTI HCD FTMS 0 0 0 8406 35350.19140625 0.49943316276523414 -4 0.11586761474609375 4 Unmodified _FLHFAVLYVVT_ REV__ENSG00000180776|ENST00000400590|ZDHHC20;REV__nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20;REV__nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;REV__nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20 2.6312355333042263 0.4073809613003177 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2992 0 0 1142.6491542685615 0 1142.6491542685615 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2992 + + 19 + NaN NaN 116860.6 NaN 5925 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8411 44.127 NaN 110600 35 0 8856.2 0.261 + 4938 FANVEEHSF 9 62 540.243382129455 1078.4722113257098 2 540.2431640625 MULTI HCD FTMS 0 0 0 8406 34171.75 0.22105697155288592 4 -0.12214279174804688 5 Unmodified _FANVEEHSF_ ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6;RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant 27.628801355627647 0.12213550946336599 2 {[MS]|[{M(Oxidation (M))|F}A]}NGEEV[WQ] 9 4 + 30.18 0 0 2.7984 2.7984 81.649 0 0 0 0.17483713393631106 17.420299789533402 0.17483713393631106 3.8071968632008435 0 0.8807196863200843 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}NGEEV[WQ];{[MS]|[{M(Oxidation (M))|F}A]}NV[WE]N{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}GGGEEV[WQ];{[MS]|[{M(Oxidation (M))|F}A]}GGV[WE]N{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}NV[WE]GG{[CP]|[EA]};[NP][YE][SG]V[WQ] 2.7984;2.4454;1.9446;1.5916;1.5916;0.0064338 -;-;-;-;-;- 117 NaN NaN 117430.8 NaN 5926 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8412 44.13 NaN 52210 35 0 8108.3 0.262 -1 RYQQWMERF 9 29 453.88003143201183 1358.6182648962356 3 453.8800964355469 MULTI HCD FTMS 0 0 0 8406 10084.5205078125 0.01722861223048315 97 -2.4086456298828125 6 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 10.150570793230772 0.27265765907388223 2 NR{M(Oxidation (M))|F} 3 -1 23.812 0 0 1.7527 0 0 923.3947369194763 0 923.3947369194763 0 23.812281309285623 0 0 0 0 0 0 0 NR{M(Oxidation (M))|F} 1.7527 - 15 + NaN NaN 90126.9 NaN 5927 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8413 44.134 NaN 232360 35 0 27740 0.261 + 9134 HPHDLVILM 9 45 545.7892520713874 1089.5639512095747 2 545.7887573242188 MULTI HCD FTMS 0 0 0 8406 83294.1953125 0.36211398908120895 -4 0.11586761474609375 7 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 70.71552829651908 0.008856681705782516 2 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 8 5 55.03 0 0 5.0506 0 0 183.05590785195596 0 183.05590785195596 0 55.029513889941555 0 0 0 1.5 0 0 0 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 5.0506 - 123 + NaN NaN 124463.1 NaN 5928 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8414 44.137 NaN 29644 35 0 2424.2 0.261 -1 HPVMIAVCCF 10 29 625.2799649437144 1248.5453769542287 2 625.2828979492188 MULTI HCD FTMS 0 0 0 8406 12043.361328125 0.18458514060822145 5 -0.14856338500976562 8 2 Carbamidomethyl (C),Oxidation (M) _HPVM(Oxidation (M))IAVC(Carbamidomethyl (C))C(Carbamidomethyl (C))F_ ENSG00000106025|ENST00000222747|TSPAN12 4.3292370932331545 0.45238836448149167 2 V 1 -1 3.9794 0 0 0.31872 0 0 556.7041426786412 589.7624605768186 1146.4666032554599 0 0 0 0 0 0 0 0 0 V 0.31872 + + 2 + NaN NaN 88039.1 NaN 5929 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8415 44.14 NaN 193290 35 0 37153 0.262 + 15135 LMLMECSIC 9 48 521.7244677552317 NaN 0 521.7725830078125 PEAK HCD FTMS 0 0 0 8406 14707.0263671875 1 0 0 9 Unmodified _LMLMECSIC_ ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;nc|ENSG00000089094|Q8NHM5-4|KDM2B 5.230669730166228 0.26989974671959066 2 H 1 9 3.0989 0 0 0.29756 0 0 510.29248912198824 391.0672701471313 901.3597592691195 0 0 0 0 0 0 0 0 0 H 0.29756 - 3 + NaN NaN 123747.1 NaN 5930 2483 8406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8417 44.145 NaN 657970 35 0 128000 0.327 -1 RYKLYQEMF 9 53 431.88120739171455 1292.6217927753437 3 431.88116455078125 MULTI HCD FTMS 0 0 0 8416 204499.53125 0.5914005072102406 6 -0.17832565307617188 1 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 9.5439744041441 0.27789851728676895 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 29.024 0 0 2.2453 0 0 980.5088713262288 0 980.5088713262288 0 22.034021960761265 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2453 + + 23 NaN NaN 176365.4 NaN 5931 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8418 44.15 NaN 84417 35 0 6406.9 0.261 + 20172 NYKKFYEQF 9 44 633.8115012324201 1265.6084495316402 2 633.8111572265625 MULTI HCD FTMS 0 0 0 8416 71317.90625 0.1655388945204759 6 -0.17832565307617188 2 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 42.312485326615175 0.05472917415473307 2 NYK 3 6 50.005 0 0 3.9511 0 0 0 857.3810347071912 857.3810347071912 36.332946754800375 0 0 0 0 0 2 0 0.3807196863200844 + NYK 3.9511 + + 62 + NaN NaN 95179.3 NaN 5932 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8419 44.153 NaN 176820 35 0 26531 0.262 -1 MPTKTIEVL 9 58 524.2913290954945 1046.5681052577888 2 524.291259765625 MULTI HCD FTMS 0 0 0 8416 65394.27734375 0.5045019918277653 -3 0.08612060546875 3 Oxidation (M) _M(Oxidation (M))PTKTIEVL_ ENSG00000175581|ENST00000310614|MRPL48;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48 26.268140514670165 0.13340543277302316 2 V{I|L} 2 -1 25.217 0 0 2.4094 0 0 816.40629856068 0 816.40629856068 0 12.28470012691339 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.4094 + + 30 NaN NaN 114521.2 NaN 5933 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8420 44.157 NaN 96561 35 0 16800 0.261 -1 RADQFEYVM 9 46 587.7632932514695 1173.5120335697388 2 587.7636108398438 MULTI HCD FTMS 0 0 0 8416 24799.69140625 0.07545939186352026 -9 0.27083587646484375 4 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 9.38312468134398 0.279288223203164 2 SYV{M(Oxidation (M))|F} 4 -1 38.443 0 0 3.2759 0 0 659.3099232404312 0 659.3099232404312 0 25.255762612236907 0 0 0 1 0 0 0 SYV{M(Oxidation (M))|F} 3.2759 - 28 NaN NaN 101265.1 NaN 5934 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8421 44.16 NaN 68832 35 0 11787 0.261 -1 MGCVFCKK 8 41 507.73154271308795 1013.4485324929759 2 507.73101806640625 MULTI HCD FTMS 0 0 0 8416 16658.09375 0.34479705150296763 11 -0.3166084289550781 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MGCVFC(Carbamidomethyl (C))KK_ ENSG00000000938|ENST00000374005|FGR;ENST00000475472.5_1_1:27950064-27950427:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97063 NaN 5935 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8422 44.163 NaN 80741 35 0 15356 0.261 -1 IYADNQVMHF 10 39 627.2848914525658 1252.5552299719316 2 627.2850952148438 MULTI HCD FTMS 0 0 0 8416 32738.4375 0.6338637262266312 -3 0.08612060546875 6 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 34.93206674587334 0.18938571726943593 2 {I|L}YAD{[QN]|[E{I|L}]|[KN]}V 7 -1 63.984 0 0 5.1083 0 0 0 446.1501864068969 446.1501864068969 55.91206360493317 0 0 0 0 0.9247425010840047 2 0 0 {I|L}YAD{[QN]|[E{I|L}]|[KN]}V 5.1083 + + 29 + NaN NaN 101090.2 NaN 5936 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8423 44.167 NaN 35166 35 0 5110.2 0.261 + -1 VCWRIAFCL 9 33 584.2958374023438 NaN 0 584.2958374023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _VCWRIAFC(Carbamidomethyl (C))L_ REV__ENST00000556036.5_2_14:45605535-45605673:+|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109763.9 NaN 5937 2484 8416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8425 44.172 NaN 436710 35 0 71198 0.327 + 28552 TPSVHEPVL 9 58 489.7664005269314 977.5182481206629 2 489.76629638671875 MULTI HCD FTMS 0 0 0 8424 241960.21875 0.4433182997917596 4 -0.12226486206054688 1 Unmodified _TPSVHEPVL_ ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF 107.99703571036002 0.003269392969029945 2 [VP]N[NP]EPV{I|L} 9 4 + 71.749 0 0 7.3399 7.3399 86.874 0 0 0 1.3673479766736705 1.3673479766736705 1.3673479766736705 1.3673479766736705 0 1.305462187404089 1.6989700043360187 1.1861818737241734 0 [VP]N[NP]EPV{I|L};TPSVHEPV{I|L};[VP][HS]TEPV{I|L};[VP]GG[NP]EPV{I|L};{[YC]|[HE]}[VS][TP]PV{I|L};[TP]{[HG]|PP}QQPT{I|L};[VP][HS][DP]{I|L}T{I|L};[VP][HS]{NN|[MP]|[D{I|L}]|[EV]}PT{I|L};{[YC]|[HE]}[VS][VP]PT{I|L} 7.3399;7.2001;7.1364;6.3979;3.503;2.6255;2.1401;1.96;0.52991 -;+;-;-;-;-;-;-;- + 239 NaN NaN 163355.5 NaN 5938 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8426 44.176 NaN 564820 35 0 62333 0.261 + 28743 TTAENEFVM 9 78 529.2290965144389 1056.4436400956777 2 529.2291259765625 MULTI HCD FTMS 0 0 0 8424 54379.828125 0.34332955112463 4 -0.12226486206054688 2 Oxidation (M) _TTAENEFVM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant 74.92900055777586 0.007493270374442853 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YADVSV{M(Oxidation (M))|F} 9 6 + 55.968 0 0 5.2978 5.2978 91.072 0 0 0 18.514705659521773 3.356442311582562 3.356442311582562 30.111818160191042 0 0.8494850021680094 0 1.3193415193665468 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YADVSV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WC(Carbamidomethyl (C))]{[DS]|[MA]|[CV]|TT}V{M(Oxidation (M))|F};[YT]S{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E[YT];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA][{M(Oxidation (M))|F}E]SV{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT}V{M(Oxidation (M))|F};[YT]SVD{[ES]|[DT]|[{I|L}C]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[CT]|[{M(Oxidation (M))|F}G]}E[DV]ASSV{M(Oxidation (M))|F};[NS]{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}E]SV{M(Oxidation (M))|F};[YT]YY{[DS]|[MA]|[CV]|TT}V{M(Oxidation (M))|F};[YT]S{[HG]|PP}VH{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.2978;2.4475;2.1753;2.0452;1.8191;1.7803;1.4933;1.4078;1.1738;0.87958 -;-;-;-;-;-;-;-;-;- 958 + NaN NaN 187876 NaN 5939 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8427 44.18 NaN 123690 35 0 24178 0.261 + 3774 EPASPEQEL 9 39 500.2351714867734 998.4557900403469 2 500.2350158691406 MULTI HCD FTMS 0 0 0 8424 62937.375 0.7284019926210272 1 -0.029705047607421875 3 Unmodified _EPASPEQEL_ ENSG00000148773|ENST00000368654|MKI67 45.69961567697781 0.039180348357221985 2 QE{I|L} 3 6 36.995 0 0 3.7052 0 0 610.25883681465 0 610.25883681465 0 23.016609670558594 0 0 0 0.4247425010840047 0 0.4247425010840047 0.3807196863200844 + QE{I|L} 3.7052 + + 24 NaN NaN 112554.1 NaN 5940 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8428 44.183 NaN 176410 35 0 19225 0.261 + 16579 LVEQVQSLI 9 53 514.8029592556205 1027.591365578041 2 515.294921875 MULTI HCD FTMS 0 0 0 8424 15024.373046875 0.10812343531573901 8 -0.23445892333984375 4 Unmodified _LVEQVQSLI_ REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF 34.40172386719151 0.0910440009062557 2 {I|L}VQE 4 -1 42.792 0 0 4.1643 0 0 0 555.3142183893186 555.3142183893186 12.614393726401687 0 0 0 0 0.3935078169319297 1.6989700043360187 0.3807196863200844 0.4247425010840047 {I|L}VQE 4.1643 - 69 + NaN NaN 120715.5 NaN 5941 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8429 44.186 NaN 75884 35 0 7293.8 0.261 -1 YPESESIMM 9 40 559.7224742459309 1117.4303955586618 2 559.7223510742188 MULTI HCD FTMS 0 0 0 8424 21431.80859375 0.17048237822933632 25 -0.6943817138671875 5 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.7041 0 0 805.3491843781828 0 805.3491843781828 0 26.237125054200234 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7041 + + 19 NaN NaN 90395 NaN 5942 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8430 44.19 NaN 163620 35 0 33854 0.261 -1 GMHTLCLLD 9 47 538.2478988671777 1074.4812448011553 2 538.2474365234375 MULTI HCD FTMS 0 0 0 8424 46492.45703125 0.5567949548737661 3 -0.0891571044921875 6 Carbamidomethyl (C),Oxidation (M) _GM(Oxidation (M))HTLC(Carbamidomethyl (C))LLD_ ENSG00000117543|ENST00000370109|DPH5;ENST00000481871.5_1_1:101455997-101490867:-|nuORF;ENST00000492067.5_1_1:101455997-101487245:-|nuORF;nc|ENSG00000117543|Q9H2P9-2|DPH5;nc|ENSG00000117543|Q9H2P9-3|DPH5;nc|ENSG00000117543|Q9H2P9-4|DPH5;nc|ENSG00000117543|Q9H2P9-5|DPH5;nc|ENSG00000117543|Q9H2P9-6|DPH5 6.723162845929126 0.3000504726104499 2 {I|L}D{I|L} 3 -1 28.5 0 0 2.6524 0 0 715.2703724591812 0 715.2703724591812 0 10.083559388717372 0 0 0 0.3807196863200844 0 0 0 {I|L}D{I|L} 2.6524 - 36 NaN NaN 111860.3 NaN 5943 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8431 44.193 NaN 128080 35 0 13783 0.261 + 32333 VYVGAVNRI 9 50 495.7900154570669 989.5654779809338 2 495.7899169921875 MULTI HCD FTMS 0 0 0 8424 50509.9609375 1 0 0 7 Unmodified _VYVGAVNRI_ ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant 34.10243960390752 0.09241788333544565 2 [YV]VQV 5 5 51.95 0 0 5.2498 0 0 0 398.21494470767817 398.21494470767817 46.46591250700361 0 0 0 0 1.4247425010840047 1.6989700043360187 0 0 [YV]VQV 5.2498 - 34 + NaN NaN 96811.1 NaN 5944 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8432 44.196 NaN 29720 35 0 7941.6 0.261 + 7518 FWTFDNKTR 9 19 607.8012916224915 1213.5880303117829 2 607.8003540039062 MULTI HCD FTMS 0 0 0 8424 8926.923828125 0.014968753304494301 33 -0.9053611755371094 8 Unmodified _FWTFDNKTR_ REV__ENSG00000000971|ENST00000367429|CFH;REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF;REV__nc|ENSG00000000971|P08603|CFH 1.6526216038709556 0.33848895094777925 2 M 1 -1 11.99 0 0 0.98795 0 0 632.3277003613184 447.19953333072505 1079.5272336920434 0 0 0 0 0 0.5 0 0 0 M 0.98795 - 1 + NaN NaN 99710.8 NaN 5945 2485 8424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8434 44.202 NaN 712180 35 0 143530 0.326 + 9085 HPFFKDMSL 9 63 569.2735448636703 1136.5325367941405 2 569.2733154296875 MULTI HCD FTMS 0 0 0 8433 258219.171875 0.7502812755687006 -5 0.14223098754882812 1 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 43.77239144664712 0.04802738721622131 2 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.745 0 0 0 752.3296180473592 752.3296180473592 -9.134797042975933 0 -9.134797042975933 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.745 + + 703 + NaN NaN 198046.7 NaN 5946 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8435 44.206 NaN 307090 35 0 25305 0.261 + 30541 VMSQALKATF 10 70 556.2941079331289 1110.5736629330577 2 556.294189453125 MULTI HCD FTMS 0 0 0 8433 178698.78125 0.6154467158282623 3 -0.092559814453125 2 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 112.04118876639723 4.866328273697036E-05 2 ESQA{I|L}KAT{M(Oxidation (M))|F} 9 2 96.53 0 0 8.6919 0 0 117.07772547901091 0 117.07772547901091 0 82.26096419049321 0 0 0 3.5189301784845295 0 1.416386562212267 0 ESQA{I|L}KAT{M(Oxidation (M))|F} 8.6919 - 627 + NaN NaN 127391.1 NaN 5947 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8436 44.21 NaN 803730 35 0 122000 0.261 + 12481 KQYADVEGF 9 84 528.7534215722214 NaN 0 528.7534790039062 PEAK HCD FTMS 0 0 0 8433 360935.875 0.4909604632647275 -3 0.089111328125 3 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 198.2503983107462 1.1171444736344865E-36 2 GEVDAY 6 8 73.709 0 0 6.9834 0 0 165.07901198554845 253.13039525903676 418.20940724458524 0 0 0 0 0 3.305462187404089 0 1.7034021960761265 0 GEVDAY 6.9834 - 604 NaN NaN 200579.7 NaN 5948 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8437 44.213 NaN 209620 35 0 19254 0.261 + 4861 FADQEVRSL 9 59 532.7718984951418 1063.5292440570836 2 532.7719116210938 MULTI HCD FTMS 0 0 0 8433 82969.71875 0.35816155325634863 4 -0.12221527099609375 4 Unmodified _FADQEVRSL_ ENSG00000011405|ENST00000691414|PIK3C2A 75.5705956163825 0.007285660612518157 2 {M(Oxidation (M))|F}ADQEVR{[TV]|[{I|L}S]} 9 0 + 74.549 0 0 7.0096 7.0096 90.278 0 0 0 71.45033150757364 7.389917747712644 7.389917747712644 9.208187539523749 0 2.110924374808178 0 0.7059771852360797 0.3807196863200844 + + {M(Oxidation (M))|F}ADQEVR{[TV]|[{I|L}S]};{M(Oxidation (M))|F}AD[AG]EVR{[TV]|[{I|L}S]};{[MS]|[{M(Oxidation (M))|F}A]}DQEVR{[TV]|[{I|L}S]};{[MS]|[{M(Oxidation (M))|F}A]}D[AG]EVR{[TV]|[{I|L}S]};{[MS]|[{M(Oxidation (M))|F}A]}DQ{[TV]|[{I|L}S]}[RV]E;{[MS]|[{M(Oxidation (M))|F}A]}DQ[{I|L}V]{[QD]|[EN]|[WG]|[KD]|[RS]}E 7.0096;6.1438;5.1583;3.7061;2.1259;2.0515 +;-;+;-;-;- + 198 + NaN NaN 116085.1 NaN 5949 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8438 44.216 NaN 135300 35 0 10148 0.262 + 11787 KEEKGKYIDF 10 53 419.55570075089355 1255.6452728528807 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8433 75861.265625 0.3213953546256145 17 -0.4804191589355469 5 Unmodified _KEEKGKYIDF_ tr|U7SQX8|U7SQX8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01842PE=4SV=1 10.799506525563784 0.4100970765206026 2 {M(Oxidation (M))|F} 1 9 21.237 0 0 1.6913 0 0 1090.5661693145978 0 1090.5661693145978 0 1.5443874496362042 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.6913 + + 6 + NaN NaN 104453.2 NaN 5950 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8439 44.22 NaN 323220 35 0 27136 0.261 -1 RYKLYQEMF 9 55 647.318434432198 1292.622315931196 2 647.8207397460938 MULTI HCD FTMS 0 0 0 8433 30720.083984375 0.3985201830761949 7 -0.20475387573242188 6 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 13.042465956692817 0.2476723265019929 2 YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 5 -1 20.502 0 0 1.5861 0 0 560.3425160138687 0 560.3425160138687 0 20.501896823007826 0 0 0 0.3054621874040891 0 0 0 YQ{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 1.5861 - 25 NaN NaN 131849.4 NaN 5951 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8440 44.223 NaN 59859 35 0 6336.1 0.261 + 23957 RVFPEKGYSF 10 44 615.3198111852256 1228.625069437251 2 615.3193969726562 MULTI HCD FTMS 0 0 0 8433 27226.630859375 0.46364466229258605 5 -0.14199066162109375 7 Unmodified _RVFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 4.5288652416199255 0.4513317009562028 2 K 1 9 6.9897 0 0 0.5689 0 0 472.19710420463235 625.3104952447874 1097.5075994494198 0 0 0 0 0 0 0 0 0 + K 0.5689 + + 15 + NaN NaN 91075.3 NaN 5952 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8441 44.226 NaN 95216 35 0 10134 0.261 + 3374 EERDEKGRC 9 46 561.2551334450851 1120.4957139569701 2 561.2533569335938 MULTI HCD FTMS 0 0 0 8433 16959.82421875 0.2818710846594544 4 -0.12221527099609375 8 Unmodified _EERDEKGRC_ REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1 2.9952420565917617 0.3283108881486655 2 HG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4 -1 11.427 0 0 1.0198 0 0 649.2899647443375 0 649.2899647443375 0 11.42667503568731 0 0 0 0 0 0 0 HG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.0198 - 15 NaN NaN 97199.7 NaN 5953 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8442 44.229 NaN 112690 35 0 11374 0.261 + 15954 LPPSHPDPAF 10 57 539.2716685636605 1076.5287841941208 2 539.2714233398438 MULTI HCD FTMS 0 0 0 8433 18674.37890625 0.5039106869553118 -3 0.089111328125 9 Unmodified _LPPSHPDPAF_ ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;nc|ENSG00000114650|Q12770-4|SCAP 19.256988751693697 0.33098864134661865 2 {I|L}P 2 8 34.949 0 0 3.2464 0 0 0 863.3703828786608 863.3703828786608 17.501225267834 0 0 0 0 0 1.3979400086720375 0 0 + {I|L}P 3.2464 + + 10 + NaN NaN 103206.1 NaN 5954 2486 8433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8444 44.235 NaN 121130 35 0 11159 0.327 + 28356 TPDGTEKGDFL 11 42 590.2799903506276 1178.545427768055 2 590.2801513671875 MULTI HCD FTMS 0 0 0 8443 108686.859375 0.9327859776606097 1 -0.02642059326171875 1 Unmodified _TPDGTEKGDFL_ ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF 49.74193281347159 0.08247801322054248 2 TPD 3 8 33.698 0 0 2.8593 0 0 0 862.3944515044792 862.3944515044792 -5.994850021680094 0 -5.994850021680094 0 0 0.4247425010840047 0 0.3252574989159953 0 + TPD 2.8593 + + 43 + NaN NaN 105532.2 NaN 5955 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8445 44.239 NaN 238180 35 0 61588 0.263 -1 SSGPVDPMM 9 34 468.69362779304697 935.372702652894 2 468.6936340332031 MULTI HCD FTMS 0 0 0 8443 94873.578125 0.6717165269522551 -4 0.12214279174804688 2 Oxidation (M) _SSGPVDPM(Oxidation (M))M_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 21.74664581756881 0.17247014374749275 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 4 -1 25.49 0 0 2.7251 0 0 427.2062196919489 0 427.2062196919489 0 21.994784489444967 0 0 0 0.9247425010840047 0 0.3054621874040891 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 2.7251 + + 5 NaN NaN 124766.1 NaN 5956 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8446 44.243 NaN 172290 35 0 30366 0.261 + 903 AYAPPPHVI 9 39 482.76608329503614 963.5176136568723 2 482.76605224609375 MULTI HCD FTMS 0 0 0 8443 67793.140625 0.3408299095937946 9 -0.2603263854980469 3 Unmodified _AYAPPPHVI_ ENSG00000128335|ENST00000358502|APOL2 20.871210003555333 0.18003371494288972 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4 5 41.682 0 0 4.3261 0 0 0 558.3036593072874 558.3036593072874 22.98577533287428 0 0 0 0 1 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AP 4.3261 + + 33 + NaN NaN 126852.2 NaN 5957 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8447 44.246 NaN 190500 35 0 12672 0.261 + 17799 MFIEELVII 9 71 553.8134006549502 1105.6122483767003 2 553.8317260742188 MULTI HCD FTMS 0 0 0 8443 8358.3505859375 0.21681469798773326 4 -0.10895919799804688 4 Unmodified _MFIEELVII_ REV__ENSG00000188738|ENST00000424728|FSIP2;REV__FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;REV__FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2 8.593279151180031 0.2858735984551981 2 MTE{I|L}AKR 7 -1 39.941 0 0 3.6126 0 0 0 273.12384973697505 273.12384973697505 13.99874508449237 0 0 0 0 0 0 0.5 0 MTE{I|L}AKR 3.6126 - 294 + NaN NaN 112430.9 NaN 5958 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8448 44.249 NaN 57101 35 0 5686.2 0.261 -1 YYRGNYMTF 9 35 615.7662995083853 1229.5180460835704 2 615.7655029296875 MULTI HCD FTMS 0 0 0 8443 24692.80859375 0.6907529916451062 -1 0.033031463623046875 5 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ ENSG00000204574|ENST00000326195|ABCF1;nc|ENSG00000204574|Q8NE71-2|ABCF1 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 3 -1 10.458 0 0 0.85054 0 0 816.3528919904312 0 816.3528919904312 0 1.8740810491245004 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 0.85054 + + 12 NaN NaN 88776.1 NaN 5959 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8449 44.253 NaN 111690 35 0 12417 0.261 -1 HYMSINDSF 9 39 565.2344560437472 1128.4543591542943 2 565.2341918945312 MULTI HCD FTMS 0 0 0 8443 40099.64453125 0.450923625012497 -9 0.2776679992675781 6 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 20.41453444215458 0.18397929046831515 2 TNDS{M(Oxidation (M))|F} 5 -1 51.454 0 0 4.5597 0 0 546.2172718732437 0 546.2172718732437 0 45.96910013008056 0 0 0 1.5 0 0 0 TNDS{M(Oxidation (M))|F} 4.5597 - 42 NaN NaN 119507.4 NaN 5960 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8450 44.256 NaN 101970 35 0 14240 0.262 -1 IDSTMWSC 8 51 479.68463653684825 NaN 0 479.6841125488281 PEAK HCD FTMS 0 0 0 8443 13248.2119140625 0.49976883308562553 -6 0.175262451171875 7 Oxidation (M) _IDSTM(Oxidation (M))WSC_ ENST00000567274.5_1_15:43103896-43132622:-|nuORF 9.347437153973935 0.38822285293237185 2 VTD 3 -1 18.672 0 0 1.9504 0 0 442.09753127506525 197.09351526431877 639.191046539384 0 0 0 0 0 0 0 1 0 VTD 1.9504 - 15 + NaN NaN 124175.8 NaN 5961 2487 8443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8452 44.261 NaN 266970 35 0 44144 0.327 + 20169 NYKKFYEQF 9 50 422.8766604855716 1265.6081520569148 3 422.8765563964844 MULTI HCD FTMS 0 0 0 8451 105518.4453125 0.08667627905252691 11 -0.32277679443359375 1 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.7375 0 0 1100.5292163653116 0 1100.5292163653116 0 16.303337684950062 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7375 + + 11 + NaN NaN 128416.6 NaN 5962 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8453 44.265 NaN 446530 35 0 129890 0.463 + 24832 RYPSLWRRL 9 59 416.2436918347977 1245.7092461045931 3 416.2436218261719 MULTI HCD FTMS 0 0 0 8451 157233.734375 0.1142930601852466 27 -0.7303314208984375 2 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 8.97624648632007 0.2828035605319045 2 {I|L}R 2 7 23.711 0 0 1.9034 0 0 0 973.4997948217296 973.4997948217296 9.731975075880328 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.9034 - 22 + NaN NaN 143421.2 NaN 5963 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8454 44.272 NaN 293230 35 0 23870 0.261 + 15797 LPHSATVTL 9 49 469.76883442735755 937.5231159215151 2 469.76861572265625 MULTI HCD FTMS 0 0 0 8451 136373.421875 0.8921438911457374 -1 0.02642059326171875 3 Unmodified _LPHSATVTL_ ENSG00000054611|ENST00000337137|TBC1D22A;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant 39.957323273324995 0.06554068735427583 2 TVT{I|L} 4 5 38.136 0 0 4.0677 0 0 505.2646656720719 0 505.2646656720719 0 31.146387799684874 0 0 0 0.7742275032520141 0 0.9247425010840047 0 + TVT{I|L} 4.0677 + + 73 NaN NaN 135809.4 NaN 5964 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8455 44.276 NaN 179620 35 0 37044 0.261 -1 RFIRPMGLRF 10 41 436.9165685789726 1307.7278763371178 3 436.91656494140625 MULTI HCD FTMS 0 0 0 8451 67006.671875 0.9466809861455731 1 -0.033107757568359375 4 Oxidation (M) _RFIRPM(Oxidation (M))GLRF_ ENSG00000164346|ENST00000610426|NSA2;ENST00000560515.1_1_15:59693458-59694001:-|nuORF 3.876331618118854 0.45478566516190344 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2992 0 0 1142.6489406455146 0 1142.6489406455146 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2992 + + 7 + NaN NaN 135325.3 NaN 5965 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8456 44.279 NaN 183240 35 0 24670 0.261 + 18008 MLIEKDPSL 9 58 531.2809748085936 1060.547396683987 2 531.28076171875 MULTI HCD FTMS 0 0 0 8451 54462.42578125 0.4409010186868997 7 -0.20104598999023438 5 Oxidation (M) _M(Oxidation (M))LIEKDPSL_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 40.23920728925047 0.06424668180817725 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}E{I|L} 9 4 + 54.333 0 0 5.1231 5.1231 83.26 0 0 0 1.706962271689747 46.54615320817378 1.706962271689747 1.7351626989572821 0 0.4247425010840047 1.6989700043360187 0.3252574989159953 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}[PS]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[QG]|[NA]}{I|L}{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KS]VPE;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KS][DP]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RP]{[WT]|[RM]}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RP]{[WT]|[RM]}{I|L}E 5.1231;4.9595;4.6732;4.2956;3.829;2.5134;2.0635 -;+;-;-;-;-;- + 114 NaN NaN 115441.7 NaN 5966 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8457 44.282 NaN 60128 35 0 4694.8 0.261 + 21302 PSDIECMRYI 10 34 613.7792280149794 1225.5439030967586 2 613.7788696289062 MULTI HCD FTMS 0 0 0 8451 15864.6025390625 0.4778359247390505 7 -0.20104598999023438 6 Unmodified _PSDIECMRYI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 2.735195868890462 0.4608258780945842 2 Y{I|L} 2 8 20.969 0 0 1.711 0 0 931.3826421916318 0 931.3826421916318 0 18.494850021680094 0 0 0 0 0 0 0 + Y{I|L} 1.711 + + 3 NaN NaN 96609.1 NaN 5967 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8458 44.286 NaN 132800 35 0 20689 0.261 -1 LYNRTMVQL 9 50 577.305013915565 1152.59547489793 2 577.3052978515625 MULTI HCD FTMS 0 0 0 8451 33091.89453125 0.43158394482914897 -5 0.14856338500976562 7 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 24.990960013464015 0.14443998892849796 2 VQ{I|L} 3 -1 33.06 0 0 2.8683 0 0 794.3719281298568 0 794.3719281298568 0 33.05970632012567 0 0 0 0.6861818737241735 0 0 0 VQ{I|L} 2.8683 + + 43 NaN NaN 101632.6 NaN 5968 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8459 44.289 NaN 105710 35 0 8716.3 0.262 + 15765 LPFSFIDF 8 52 493.25463422687494 NaN 0 493.25433349609375 PEAK HCD FTMS 0 0 0 8451 20938.85546875 0.5911817277557183 -1 0.02642059326171875 8 Unmodified _LPFSFIDF_ ENSG00000132622|ENST00000254963|HSPA12B 8.593279151180031 0.38822285293237185 2 P{M(Oxidation (M))|F} 2 6 7.9588 0 0 0.80841 0 0 113.08247071008232 624.2640848837013 737.3465555937837 0 0 0 0 0 0 0 0 0 + P{M(Oxidation (M))|F} 0.80841 + + 6 + NaN NaN 100956 NaN 5969 2488 8451 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8461 44.294 NaN 402870 35 0 51750 0.327 + 9135 HPHDLVILM 9 49 545.7892520713874 1089.5639512095747 2 545.7891845703125 MULTI HCD FTMS 0 0 0 8460 214134.71875 0.9309313442122732 2 -0.04943084716796875 1 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 89.42679046578446 0.004540987215715461 2 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 8 5 68.608 0 0 6.2969 0 0 183.05697943295053 0 183.05697943295053 0 45.64957542276183 0 0 0 1.9247425010840047 0 0 0 {I|L}{I|L}CSV{I|L}{I|L}{M(Oxidation (M))|F} 6.2969 - 259 + NaN NaN 146380.5 NaN 5970 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8462 44.299 NaN 210770 35 0 19096 0.261 + 30542 VMSQALKATF 10 60 556.2941079331289 1110.5736629330577 2 556.294189453125 MULTI HCD FTMS 0 0 0 8460 132847.796875 0.4575338439345894 6 -0.167938232421875 2 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 74.7717668357584 0.011931216566250815 2 [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 10 0 [{M(Oxidation (M))|F}V] + + 65.889 5.2288 2.1246 5.9328 5.9328 63.802 0 0 0 0 48.97730666700717 0 0 0 2.7302046884880937 0 0.805462187404089 0 + + [{M(Oxidation (M))|F}V]SQA{I|L}KAT{M(Oxidation (M))|F} 5.9328 + + 424 + NaN NaN 122573.1 NaN 5971 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8463 44.302 NaN 210840 35 0 28221 0.261 + 20665 PFKQWIKT 8 58 524.3017353517536 NaN 0 524.2914428710938 PEAK HCD FTMS 0 0 0 8460 9022.630859375 0.5350455472181109 -3 0.092559814453125 3 Unmodified _PFKQWIKT_ SLITRK3|p.E578K|1|0.09|ENSG00000121871|chr3:165189099-165189099|C/T|missense_variant 4.75600775471527 0.38822285293237185 2 VE 2 8 18.469 0 0 1.7647 0 0 131.11600307891575 684.3404024713499 815.4564055502656 0 0 0 0 0 0 0 0.75 0 VE 1.7647 - 7 + NaN NaN 137741 NaN 5972 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8464 44.305 NaN 231020 35 0 34161 0.261 -1 RYLSPKYIKMF 11 59 487.93560805191515 1460.7849947559455 3 487.9354248046875 MULTI HCD FTMS 0 0 0 8460 84132.046875 0.20573206972051822 28 -0.7533721923828125 4 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 22.10888232116614 0.26444699522859644 2 [Y{I|L}]RS 4 -1 23.633 0 0 1.6178 0 0 0 938.4817051780386 938.4817051780386 -1.8124123737558762 0 -1.8124123737558762 0 0 0 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]RS 1.6178 - 70 NaN NaN 118069.9 NaN 5973 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8465 44.309 NaN 104360 35 0 8414.9 0.261 -1 0 38 419.3162578408133 418.3089813742133 1 419.3154602050781 MULTI HCD FTMS 0 0 0 8460 66906.9453125 0.41165695200324015 697 -17.423908233642578 5 NaN NaN 2 G{M(Oxidation (M))|F} 2 -1 19.464 0 0 4.653 0 0 196.20865286034456 0 196.20865286034456 0 15.969100130080562 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 4.653 - 4 + NaN NaN 101225.1 NaN 5974 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8466 44.312 NaN 775210 35 0 50064 0.261 + 1581 AYVHMVTHF 9 89 552.7682830401682 1103.5220131471362 2 552.7691650390625 MULTI HCD FTMS 0 0 0 8460 217508.515625 0.1268645071576121 -5 0.14867019653320312 6 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 117.59872219059416 0.0017018906413822257 2 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 102.66 0 0 9.303 9.303 94.943 0 0 0 55.84219589515433 23.018995384333593 23.018995384333593 11.56295947543775 0 2.6677353201839438 2 0.6139829889124311 0 + + AYVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[WN]|[YH]}H{[ES]|[DT]|[{I|L}C]}V;{M(Oxidation (M))|F}SVH{[WN]|[YH]}V{[ES]|[DT]|[{I|L}C]};AW{[NV]|[RG]}MVTH{M(Oxidation (M))|F};AWAAAMVTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}C[{I|L}T]VTH{M(Oxidation (M))|F};[HV]M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTH{M(Oxidation (M))|F};[HM]V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTH{M(Oxidation (M))|F} 9.303;8.2551;7.9437;4.6343;4.521;4.2263;4.1849;4.1254;3.9929;3.6069 +;+;-;-;-;-;-;-;-;- + 1731 + NaN NaN 205984.7 NaN 5975 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8467 44.315 NaN 127810 35 0 17802 0.261 + 17714 MAVIDGNVM 9 53 491.2222638315022 980.4299747298044 2 491.2222595214844 MULTI HCD FTMS 0 0 0 8460 49419.66796875 0.6748516081623352 9 -0.2633628845214844 7 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 74.92900055777586 0.007493270374442853 2 {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F} 9 0 + 67.171 0 0 6.8512 6.8512 85.671 0 0 0 0.5938593453571883 0.5938593453571883 0.5938593453571883 0.5938593453571883 0 2.3807196863200843 0 0.3252574989159953 0.4247425010840047 + + {[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[NG]V{M(Oxidation (M))|F};MSV{I|L}D[NG]V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}V{I|L}D[MN]AT 6.8512;6.7906;4.629 +;-;- + 119 NaN NaN 111862.7 NaN 5976 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8468 44.319 NaN 26422 35 0 2863.5 0.261 + 20173 NYKKFYEQF 9 23 633.8115012324201 1265.6084495316402 2 633.8114624023438 MULTI HCD FTMS 0 0 0 8460 22177.87890625 0.05147797727095509 11 -0.31276702880859375 8 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 3.876331618118854 0.3216315731786804 2 [YN]K 3 6 30.458 0 0 2.4066 0 0 0 857.3831881158811 857.3831881158811 22.385606273598313 0 0 0 0 0 2 0 0 + [YN]K 2.4066 + + 4 + NaN NaN 85472.5 NaN 5977 2489 8460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8470 44.324 NaN 323430 35 0 85846 0.327 -1 RADQFEYVM 9 47 587.7632932514695 1173.5120335697388 2 587.763671875 MULTI HCD FTMS 0 0 0 8469 206347.8125 0.627865895125354 -3 0.08918380737304688 1 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 36.506200033944 0.08138327636155518 2 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5 -1 64.508 0 0 5.497 0 0 470.22285659004064 0 470.22285659004064 0 55.83613437787733 0 0 0 2.3807196863200843 0 0.4247425010840047 0 {M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5.497 + + 72 NaN NaN 141987.8 NaN 5978 2490 8469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8471 44.328 NaN 142200 35 0 18017 0.262 + 22049 QGIGTDVYL 9 47 483.2506937119522 964.4868344907044 2 483.25006103515625 MULTI HCD FTMS 0 0 0 8469 26177.638671875 0.020712723735941567 17 -0.4566841125488281 2 Unmodified _QGIGTDVYL_ ENSG00000103507|ENST00000219794|BCKDK;ENST00000394950.7_1_16:31123427-31123583:+|nuORF 19.256988751693697 0.19398022840297344 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AKKPA 7 9 29.965 0 0 3.1069 0 0 0 232.04756824422716 232.04756824422716 -1.9580927337054277 0 -1.9580927337054277 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AKKPA 3.1069 - 34 NaN NaN 109738.1 NaN 5979 2490 8469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8472 44.332 NaN 169330 35 0 30812 0.261 + 2510 DSITVPVAR 9 44 479.2715576014203 956.5285622696406 2 479.2718811035156 MULTI HCD FTMS 0 0 0 8469 38998.2421875 0.7794516235716046 -1 0.02965545654296875 3 Unmodified _DSITVPVAR_ ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1 32.78568957990786 0.09846250359632436 2 {[DS]|[MA]|[CV]|TT}{I|L}TV 5 4 43.5 0 0 4.5477 0 0 0 438.2467942419789 438.2467942419789 43.499934467764874 0 0 0 0 1.8807196863200843 0 1 0 + {[DS]|[MA]|[CV]|TT}{I|L}TV 4.5477 + + 46 NaN NaN 103202 NaN 5980 2490 8469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8473 44.335 NaN 161930 35 0 30141 0.261 -1 0 35 612.432566313094 2445.7011593859756 4 612.6829223632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 E 1 -1 6.9897 0 0 0.2858 0 0 1515.1669929814818 798.4623507135374 2313.629343695019 0 0 0 0 0 0 0 0 0 E 0.2858 - 4 + NaN NaN 107122.8 NaN 5981 2490 8469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8474 44.338 NaN 54694 35 0 6119 0.264 -1 RYQQWMERF 9 44 453.88003143201183 1358.6182648962356 3 453.8792419433594 MULTI HCD FTMS 0 0 0 8469 19416.662109375 0.033171844118278296 104 -2.3985977172851562 5 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 7.101721422024254 0.29718071671418667 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1397 0 0 1193.5394054985777 0 1193.5394054985777 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1397 + + 3 + NaN NaN 96288.6 NaN 5982 2490 8469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8476 44.344 NaN 929120 35 0 149600 0.327 + 12482 KQYADVEGF 9 71 528.7534215722214 NaN 0 528.75341796875 PEAK HCD FTMS 0 0 0 8475 530558.25 0.7216880954516453 2 -0.06276321411132812 1 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 183.0388951392065 7.199907140751848E-36 2 TGEVDAY 7 8 75.253 0 0 7.1297 0 0 64.01374539074398 253.1310213678344 317.1447667585784 0 0 0 0 0 3.1989700043360187 0 1.031234684152075 0 TGEVDAY 7.1297 - 444 + NaN NaN 222431.2 NaN 5983 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8477 44.348 NaN 1174700 35 0 163430 0.261 -1 HPFFKDMSL 9 93 569.2735448636703 1136.5325367941405 2 569.2735595703125 MULTI HCD FTMS 0 0 0 8475 344163.15625 1 0 0 2 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 36.506200033944 0.08138327636155518 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}CTS{I|L} 9 -1 41.301 0 0 3.6339 0 0 0 78.9863555532294 78.9863555532294 7.711937088119392 0 0 0 0 0 1.0457574905606752 1.4802046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}CTS{I|L} 3.6339 - 3643 NaN NaN 257185.9 NaN 5984 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8478 44.352 NaN 169160 35 0 16958 0.261 + 30543 VMSQALKATF 10 57 556.2941079331289 1110.5736629330577 2 556.2940673828125 MULTI HCD FTMS 0 0 0 8475 112333.0703125 0.38688019425277076 8 -0.24023818969726562 3 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 70.92866715596459 0.016484948974345597 2 A{I|L}KAT{M(Oxidation (M))|F} 6 4 66.86 0 0 6.0203 0 0 461.1923285598139 0 461.1923285598139 0 58.44335023848103 0 0 0 2.305462187404089 0 0.805462187404089 0 + A{I|L}KAT{M(Oxidation (M))|F} 6.0203 + + 188 + NaN NaN 110980.8 NaN 5985 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8479 44.355 NaN 271190 35 0 24126 0.261 + 12933 KYGRIVEVL 9 66 538.8264574720502 1075.6383620109002 2 538.8265991210938 MULTI HCD FTMS 0 0 0 8475 42869.5625 0.7011808178954636 -2 0.04943084716796875 4 Unmodified _KYGRIVEVL_ ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2;ENSG00000213516|ENST00000652648|RBMXL1;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;nc|ENSG00000147274|P38159-3|RBMX 21.536976647645854 0.1742816388551942 2 [YT]D 3 8 21.963 0 0 2.0418 0 0 0 693.4778755209189 693.4778755209189 1.1607435312808434 0 0 0 0 0 2 0 0 [YT]D 2.0418 - 96 NaN NaN 124891.3 NaN 5986 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8480 44.358 NaN 143390 35 0 17770 0.261 + 24637 RYLQKIEEF 9 42 613.3321712075281 1224.649789481856 2 613.3321533203125 MULTI HCD FTMS 0 0 0 8475 33199.82421875 0.5572105626157147 -1 0.019775390625 5 Unmodified _RYLQKIEEF_ ENSG00000026559|ENST00000371571|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant;nc|ENSG00000026559|Q9UIX4-2|KCNG1 9.38312468134398 0.279288223203164 2 QK{I|L}E[{M(Oxidation (M))|F}E] 6 3 19.965 0 0 1.6303 0 0 432.24800307441564 0 432.24800307441564 0 19.965394678904932 0 0 0 0 0 0 0 + QK{I|L}E[{M(Oxidation (M))|F}E] 1.6303 + + 20 NaN NaN 119279.1 NaN 5987 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8481 44.361 NaN 102330 35 0 11428 0.263 -1 0 42 493.75712630787984 1970.9993993651194 4 494.24407958984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 S[VP]V{M(Oxidation (M))|F} 5 -1 22.218 0 0 1.1273 0 0 1423.7255479020318 0 1423.7255479020318 0 13.634993639681312 0 0 0 0 0 0 0 S[VP]V{M(Oxidation (M))|F} 1.1273 - 37 + NaN NaN 97426.6 NaN 5988 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8482 44.365 NaN 67834 35 0 9691.2 0.261 + 32994 YASVEVSKL 9 39 498.2738090407291 994.5330651482582 2 498.2741394042969 MULTI HCD FTMS 0 0 0 8475 37520.59375 1 0 0 7 Unmodified _YASVEVSKL_ CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF;nc|ENSG00000102974|P49711-2|CTCF 29.84058131909904 0.11198220037953927 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV 4 5 39.297 0 0 3.9513 0 0 0 571.3092135065061 571.3092135065061 18.85151878060192 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SV 3.9513 + + 40 + NaN NaN 96351.4 NaN 5989 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8483 44.368 NaN 35661 35 0 6164.5 0.261 -1 YLEEEMPLDV 10 30 627.2848914525658 1252.5552299719316 2 627.2859497070312 MULTI HCD FTMS 0 0 0 8475 15763.55078125 0.30520525106813207 4 -0.11850738525390625 8 Oxidation (M) _YLEEEM(Oxidation (M))PLDV_ tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1 6.723162845929126 0.4397169348982109 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 88754.3 NaN 5990 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8484 44.371 NaN 34122 35 0 4342.7 0.261 -1 RYALQMEQL 9 23 584.2950672224111 NaN 0 584.2951049804688 PEAK HCD FTMS 0 0 0 8475 21228.865234375 0.6724004008229764 -4 0.10895919799804688 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 5.731851221503515 0.26747109115447115 2 QE{M(Oxidation (M))|F} 3 -1 16.198 0 0 1.3885 0 0 131.0980368694498 628.3273898965355 759.4254267659853 0 0 0 0 0 0 0 0 0 QE{M(Oxidation (M))|F} 1.3885 - 8 + NaN NaN 99573.5 NaN 5991 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8485 44.375 NaN 110230 35 0 22506 0.262 + 8723 HHFCCYLHRVL 11 44 476.564171103192 1426.670683909776 3 476.8994445800781 MULTI HCD FTMS 0 0 0 8475 15921.6865234375 0.607859548481474 -1 0.019775390625 10 Unmodified _HHFCCYLHRVL_ ENSG00000277481|ENST00000620267|PKD1L3 1.3296431237094175 0.4130893034510334 2 [DV]{[NV]|[RG]}D 5 10 7.6491 0 0 0.53615 0 0 0 881.4157149979197 881.4157149979197 0.6593871989765923 0 0 0 0 0 1.5228787452803376 0 0 [DV]{[NV]|[RG]}D 0.53615 - 13 NaN NaN 99989 NaN 5992 2491 8475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8487 44.38 NaN 530590 35 0 154260 0.327 + 2390 DPHEREFVI 9 55 571.2853877521446 1140.5562225710892 2 571.2853393554688 MULTI HCD FTMS 0 0 0 8486 157061.015625 0.8607269495195827 -1 0.03635406494140625 1 Unmodified _DPHEREFVI_ ENSG00000066117|ENST00000394963|SMARCD1;nc|ENSG00000066117|Q96GM5-2|SMARCD1 13.614867670302875 0.2427269026982664 2 DPHE 4 5 30.349 0 0 2.6609 0 0 0 659.3516329400999 659.3516329400999 4.151603310239906 0 0 0 0 0 0 0.3807196863200844 0 + DPHE 2.6609 + + 41 + NaN NaN 167051.2 NaN 5993 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8488 44.384 NaN 149530 35 0 12277 0.264 -1 KMPKFKMPSF 10 67 419.555750436048 1255.6454219083441 3 419.5558166503906 MULTI HCD FTMS 0 0 0 8486 48570.04296875 0.11506327682486521 -25 0.7163619995117188 2 Oxidation (M) _KMPKFKM(Oxidation (M))PSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 13.51866281300042 0.3846630060559883 2 S{M(Oxidation (M))|F} 2 -1 22.206 0 0 1.7685 0 0 1003.534992076116 0 1003.534992076116 0 16.721675119240516 0 0 0 0.4247425010840047 0 0 0 S{M(Oxidation (M))|F} 1.7685 + + 19 + NaN NaN 99355.8 NaN 5994 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8489 44.388 NaN 172470 35 0 36268 0.261 + 27529 TAAENEFVT 9 51 491.2305212095519 980.4464894859038 2 491.220947265625 MULTI HCD FTMS 0 0 0 8486 72136.546875 0.6547022995927981 -2 0.05612945556640625 3 Unmodified _TAAENEFVT_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 16.149105407346934 0.22083165093524068 2 V{I|L}D{[C(Carbamidomethyl (C))G]|[NC]}VT 7 6 39.073 0 0 3.9852 0 0 218.07225234199376 0 218.07225234199376 0 8.103575941663195 0 0 0 0.9247425010840047 0 0 0.3494850021680094 V{I|L}D{[C(Carbamidomethyl (C))G]|[NC]}VT 3.9852 - 138 NaN NaN 105459.1 NaN 5995 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8490 44.391 NaN 30943 35 0 5554.5 0.261 + 14935 LLEVLNTLN 9 23 514.8029592556205 1027.591365578041 2 514.8030395507812 MULTI HCD FTMS 0 0 0 8486 5565.1923828125 0.018933834473952523 14 -0.3742828369140625 4 Unmodified _LLEVLNTLN_ REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88164.1 NaN 5996 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8491 44.395 NaN 112890 35 0 9623.7 0.261 + 33305 YFRDYFPI 8 55 560.7764837355871 1119.5384145379742 2 560.7761840820312 MULTI HCD FTMS 0 0 0 8486 13189.1083984375 0.38641811544344085 -2 0.05612945556640625 5 Unmodified _YFRDYFPI_ ENSG00000062282|ENST00000228027|DGAT2;nc|ENSG00000062282|Q96PD7-2|DGAT2 4.75600775471527 0.5349361699807423 2 T{[{M(Oxidation (M))|F}H]|[RQ]} 3 7 9.1947 0 0 0.82129 0 0 716.3355580060562 0 716.3355580060562 0 3.1124313711587375 0 0 0 0 0 0.3252574989159953 0 T{[{M(Oxidation (M))|F}H]|[RQ]} 0.82129 - 49 NaN NaN 106837.2 NaN 5997 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8492 44.398 NaN 56519 35 0 5746.1 0.262 + 33000 YATTVPEH 8 34 459.22153795580437 916.4285229784088 2 459.2213134765625 MULTI HCD FTMS 0 0 0 8486 14371.0927734375 0.6148869762784644 1 -0.026409149169921875 6 Unmodified _YATTVPEH_ ENSG00000142798|ENST00000374695|HSPG2 5.760428011301431 0.5334459684533844 2 A 1 7 3.9794 0 0 0.43423 0 0 710.3230980289932 132.0447939508422 842.3678919798353 0 0 0 0 0 0 0 0 0 + A 0.43423 + + 4 + NaN NaN 85195.4 NaN 5998 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8493 44.401 NaN 136120 35 0 12043 0.261 + 1411 AYQKQPTIF 9 50 548.2953751411394 1094.5761973490787 2 548.2964477539062 MULTI HCD FTMS 0 0 0 8486 36400.2421875 0.3969266840604907 -4 0.11889266967773438 7 Unmodified _AYQKQPTIF_ ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 55.50274090549119 0.023872834264864425 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F} 9 0 + 78.835 0 0 7.2023 7.2023 90.648 0 0 0 25.642492736872597 73.35016244829767 25.642492736872597 9.208187539523749 0 2.3494850021680094 2 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]KQ[TP]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QK[AG][TP]{I|L}{M(Oxidation (M))|F} 7.2023;6.361;6.361 +;-;- + 146 NaN NaN 107599.8 NaN 5999 2492 8486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8495 44.406 NaN 472330 35 0 101370 0.327 -1 0 52 435.71799247809645 869.4214320229929 2 435.7180480957031 MULTI HCD FTMS 0 0 0 8494 132824.34375 0.6998796643643502 -2 0.06276321411132812 1 NaN NaN 2 VHMTVH{M(Oxidation (M))|F} 7 -1 + 80.182 0 0 9.2224 9.2224 89.582 0 0 0 1.3772686722014527 1.3772686722014527 1.3772686722014527 1.3772686722014527 0 2.242992819099939 1.3979400086720375 0.3807196863200844 0 VHMTVH{M(Oxidation (M))|F};[HV]MTVH{M(Oxidation (M))|F};[HV]MVTH{M(Oxidation (M))|F};VMHTVH{M(Oxidation (M))|F};VH[HA]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};[HT]{[ET]|[MV]}VH{M(Oxidation (M))|F} 9.2224;9.064;8.7178;5.7065;5.0873;3.6916 -;-;-;-;-;- 196 + NaN NaN 161189.7 NaN 6000 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8496 44.411 NaN 343240 35 0 100740 0.261 + 24833 RYPSLWRRL 9 53 416.2436918347977 1245.7092461045931 3 416.24359130859375 MULTI HCD FTMS 0 0 0 8494 118522.125 0.08615362612707977 32 -0.8387260437011719 2 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 8.97624648632007 0.2828035605319045 2 {M(Oxidation (M))|F} 1 9 13.979 0 0 1.1222 0 0 1080.6306461063493 0 1080.6306461063493 0 0.8804562952784067 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1222 - 14 + NaN NaN 140083 NaN 6001 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8497 44.414 NaN 225680 35 0 50758 0.261 -1 SSGPVDPMM 9 35 468.69362779304697 935.372702652894 2 468.69342041015625 MULTI HCD FTMS 0 0 0 8494 111474.4453125 0.7892526953140211 2 -0.055744171142578125 3 Oxidation (M) _SSGPVDPM(Oxidation (M))M_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 15.847184025352803 0.2234401846867398 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 4 -1 25.177 0 0 2.6917 0 0 427.2062601401756 0 427.2062601401756 0 21.682437647924218 0 0 0 0.9247425010840047 0 0.2742275032520141 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M 2.6917 + + 4 NaN NaN 122119.4 NaN 6002 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8498 44.417 NaN 193760 35 0 42007 0.261 + 10206 IGFNTPWF 8 49 491.2465544518123 NaN 0 491.2307434082031 PEAK HCD FTMS 0 0 0 8494 4394.73876953125 0.7595916493087072 -1 0.026409149169921875 4 Unmodified _IGFNTPWF_ REV__ENSG00000132170|ENST00000651735|PPARG;REV__ENST00000477039.5_1_3:12393091-12447643:+|nuORF;REV__nc|ENSG00000132170|P37231-2|PPARG;REV__nc|ENSG00000132170|P37231-3|PPARG;REV__nc|ENSG00000132170|P37231|PPARG 12.531546534597751 0.38822285293237185 2 V{M(Oxidation (M))|F} 2 -1 10.969 0 0 1.1187 0 0 119.09197689160233 612.2252901666624 731.3172670582647 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.1187 - 28 + NaN NaN 111301.9 NaN 6003 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8499 44.421 NaN 429980 35 0 69794 0.261 + 3829 EPFVALGHH 9 65 503.75857032881464 1005.5025877244293 2 503.7588195800781 MULTI HCD FTMS 0 0 0 8494 73238.5 0.7026735469928256 -3 0.08253860473632812 5 Unmodified _EPFVALGHH_ REV__CON__ENSEMBL:ENSBTAP00000007350 24.67388899826682 0.14717941214954053 2 EPE{I|L} 4 -1 51.186 0 0 5.0906 0 0 0 534.2577608697874 534.2577608697874 22.95371572735597 0 0 0 0 0.5 1.3010299956639813 0.4247425010840047 0 EPE{I|L} 5.0906 - 53 + NaN NaN 144215.6 NaN 6004 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8500 44.424 NaN 190770 35 0 12835 0.261 -1 MPTKTIEVL 9 64 524.2913290954945 1046.5681052577888 2 524.2787475585938 MULTI HCD FTMS 0 0 0 8494 36396.8671875 0.28079356081666895 6 -0.1774749755859375 6 Oxidation (M) _M(Oxidation (M))PTKTIEVL_ ENSG00000175581|ENST00000310614|MRPL48;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48 14.838274106304384 0.23215694253501695 2 {NN|[MP]|[D{I|L}]|[EV]}TTE 5 -1 19.693 0 0 1.8816 0 0 0 484.2880953424438 484.2880953424438 10.740312677277187 0 0 0 0 0 0 0.5 0 {NN|[MP]|[D{I|L}]|[EV]}TTE 1.8816 - 74 + NaN NaN 114049.3 NaN 6005 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8501 44.427 NaN 163060 35 0 16700 0.261 + 9806 HYMSINDSF 9 47 565.2344560437472 1128.4543591542943 2 565.2345581054688 MULTI HCD FTMS 0 0 0 8494 82477.3359375 0.9274640645087948 -3 0.08253860473632812 7 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 57.72198328787511 0.020768266150574023 2 NDS{M(Oxidation (M))|F} 4 5 57.735 0 0 5.1163 0 0 647.2741966560505 0 647.2741966560505 0 52.250547101681875 0 0 0 2 0 0.8807196863200843 0 + NDS{M(Oxidation (M))|F} 5.1163 + + 62 + NaN NaN 113484.3 NaN 6006 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8502 44.431 NaN 113330 35 0 9400.9 0.261 + 25462 SFAVRIDSLAM 11 42 605.3179736400677 1208.6213943469354 2 605.3182983398438 MULTI HCD FTMS 0 0 0 8494 35911.6640625 0.25061400989350835 -4 0.11219406127929688 8 Unmodified _SFAVRIDSLAM_ REV__ENSG00000214402|ENST00000408973|LCNL1 9.5439744041441 0.373925449867384 2 KE{I|L}{M(Oxidation (M))|F}M 5 -1 37.167 0 0 3.0752 0 0 542.2961292951187 0 542.2961292951187 0 5.969100130080562 0 0 0 0.4247425010840047 0 0.9247425010840047 0 KE{I|L}{M(Oxidation (M))|F}M 3.0752 - 28 NaN NaN 100303.4 NaN 6007 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8503 44.434 NaN 44589 35 0 5288.9 0.262 -1 0 33 512.732739014932 1023.450925096664 2 512.7322998046875 MULTI HCD FTMS 0 0 0 8494 12049.9580078125 0.009688705438960691 57 -1.4716072082519531 9 NaN NaN 2 D{I|L} 2 -1 25.969 0 0 2.5374 0 0 777.3290882794937 0 777.3290882794937 0 25.969100130080562 0 0 0 0.5 0 0 0 D{I|L} 2.5374 - 2 NaN NaN 87823.1 NaN 6008 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8504 44.437 NaN 75120 35 0 9759.3 0.261 + 2186 DIFSESETR 9 37 542.2512507170782 1082.4879485009562 2 542.2514038085938 MULTI HCD FTMS 0 0 0 8494 26854.45703125 1 0 0 10 Unmodified _DIFSESETR_ ENST00000481448.5_1_21:35897903-35899047:-|nuORF;nc|ENSG00000159200|P53805-2|RCAN1 12.240655878213236 0.2545997876781172 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 3 6 33.2 0 0 3.067 0 0 0 704.2875460260374 704.2875460260374 32.71529987308661 0 0 0 0 0.4247425010840047 2 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 3.067 + + 11 + NaN NaN 98987.2 NaN 6009 2493 8494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8506 44.442 NaN 137460 35 0 15915 0.326 + 9136 HPHDLVILM 9 42 545.7892520713874 1089.5639512095747 2 545.7891235351562 MULTI HCD FTMS 0 0 0 8505 91412.546875 0.39740778906368346 7 -0.18723297119140625 1 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 53.57557251787612 0.02656881086235134 2 {I|L}{I|L}C[VS]{I|L}{I|L}{M(Oxidation (M))|F} 8 5 42.089 0 0 3.8629 0 0 183.05847132851846 0 183.05847132851846 0 42.0885127703319 0 0 0 1.5 0 0 0 {I|L}{I|L}C[VS]{I|L}{I|L}{M(Oxidation (M))|F} 3.8629 - 34 + NaN NaN 103678.1 NaN 6010 2494 8505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8507 44.447 NaN 261390 35 0 32386 0.261 + -1 VTSSKMPLA 9 66 488.26177117987453 NaN 0 488.2706604003906 PEAK HCD FTMS 0 0 0 8505 13219.4326171875 0.6851033943561449 -1 0.036205291748046875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VTSSKMPLA_ REV__ENST00000465804.5_1_3:149236930-149236996:-|nuORF 7.910154910731844 0.25691533546754686 2 YKPE 4 -1 7.6072 0 0 0.78062 0 0 67.01817845794126 387.2024019830688 454.22058044101004 0 0 0 0 0 0.24299281909993908 0 0.8494850021680094 0 YKPE 0.78062 - 19 + NaN NaN 120409.8 NaN 6011 2494 8505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8508 44.45 NaN 122560 35 0 8420.5 0.261 + 7139 FSDGWIWLP 9 57 560.7764837355871 1119.5384145379742 2 560.7655029296875 MULTI HCD FTMS 0 0 0 8505 34131.703125 1 0 0 3 Unmodified _FSDGWIWLP_ REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF 7.910154910731844 0.2910521888787154 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VW 4 -1 24.437 0 0 2.1828 0 0 0 597.2313326471311 597.2313326471311 1.1092437480817807 0 0 0 0 0 1.3010299956639813 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VW 2.1828 - 150 + NaN NaN 99241.6 NaN 6012 2494 8505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8509 44.454 NaN 34849 35 0 3718.7 0.261 + 20174 NYKKFYEQF 9 31 633.8115012324201 1265.6084495316402 2 634.3138427734375 MULTI HCD FTMS 0 0 0 8505 21885.087890625 0.07416182683761631 17 -0.4467658996582031 4 Unmodified _NYKKFYEQF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 1.7422754331352037 0.3378093081622225 2 T{[{M(Oxidation (M))|F}H]|[RQ]} 3 8 8.9524 0 0 0.70736 0 0 862.4256014865215 0 862.4256014865215 0 1.5051499783199063 0 0 0 0 0 0 0 T{[{M(Oxidation (M))|F}H]|[RQ]} 0.70736 - 13 + NaN NaN 91455.8 NaN 6013 2494 8505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8510 44.457 NaN 31655 35 0 4823.4 0.261 + -1 PAPMLCISSFG 11 26 590.2799903506276 1178.545427768055 2 590.2798461914062 MULTI HCD FTMS 0 0 0 8505 20670.3203125 0.1773994119632116 8 -0.22360992431640625 5 Carbamidomethyl (C) _PAPMLC(Carbamidomethyl (C))ISSFG_ REV__ENST00000391860.6_3_1:230458589-230458772:-|nuORF 1.1933415558491238 0.4136870758253112 2 [PA]P 3 -1 10.458 0 0 0.88733 0 0 0 910.3822725885374 910.3822725885374 10.45757490560675 0 0 0 0 0 0 0 0 [PA]P 0.88733 + + 1 + NaN NaN 91552.1 NaN 6014 2494 8505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8512 44.462 NaN 2571500 35 0 187030 0.327 + 1582 AYVHMVTHF 9 107 552.7682830401682 1103.5220131471362 2 552.7683715820312 MULTI HCD FTMS 0 0 0 8511 1509220.25 0.8802712052830145 1 -0.03285980224609375 1 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 131.29775728308752 0.0005262696486345744 2 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 101.95 0 0 9.2388 9.2388 92.509 0 0 0 44.174654469529656 22.310742312574718 22.310742312574718 8.569758080123705 0 2.6677353201839438 2 0.8441876774005248 0 + + AYVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVT{M(Oxidation (M))|F}H;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMTVH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMTHV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMTV{M(Oxidation (M))|F}H;[HV]YAMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]C{I|L}TH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMTH{M(Oxidation (M))|F}V 9.2388;8.4622;7.8795;7.1635;6.8959;6.0578;5.5972;5.4452;5.4309;4.9188 +;+;-;-;-;-;-;-;-;- + 5592 + NaN NaN 491869.9 NaN 6015 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8513 44.466 NaN 1280000 35 0 221380 0.261 + 6790 FPRHIEPEL 9 84 569.3059765056141 1136.5974000780282 2 569.3060302734375 MULTI HCD FTMS 0 0 0 8511 337753.90625 0.8460897024762476 1 -0.03285980224609375 2 Unmodified _FPRHIEPEL_ ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B 83.42873516780209 0.004742894019233849 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}EPE{I|L} 9 0 + 73.775 0 0 6.4908 6.4908 85.841 0 0 0 2.4400970831689506 7.940680443502757 2.4400970831689506 2.4400970831689506 0 2.004432191740108 0.9208187539523752 1.024227503252014 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}EPE{I|L};[EP]{I|L}[TP]{I|L}EPE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}EP{I|L}E;[EP]{I|L}[TP]{I|L}EP{I|L}E;[EP]{I|L}[TP]{I|L}E{I|L}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RH{I|L}E{I|L}PE;[EP]{I|L}[RH]{M(Oxidation (M))|F}PE{I|L};{M(Oxidation (M))|F}PRH{I|L}EPE{I|L};{I|L}{M(Oxidation (M))|F}PE[RH]{I|L}PE;{[QN]|[E{I|L}]|[KN]}P[TP]{I|L}EPE{I|L} 6.4908;6.2762;5.7922;5.5775;5.2352;4.9511;4.623;4.4485;4.4084;4.4066 +;-;-;-;-;-;-;+;-;- + 2338 NaN NaN 288087.8 NaN 6016 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8514 44.47 NaN 478680 35 0 129280 0.261 + 22991 RADQFEYVM 9 51 587.7632932514695 1173.5120335697388 2 587.763427734375 MULTI HCD FTMS 0 0 0 8511 283751.6875 0.8633869441456627 2 -0.06251907348632812 3 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 51.41523569358685 0.02959097413485123 2 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 3 73.448 0 0 6.2589 0 0 342.1642323224625 0 342.1642323224625 0 63.984484532805155 0 0 0 2.805462187404089 0 0.4247425010840047 0 + Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6.2589 + + 94 NaN NaN 150803.1 NaN 6017 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8515 44.473 NaN 121640 35 0 23478 0.264 -1 0 28 424.0816673098761 423.0743908432761 1 424.08135986328125 MULTI HCD FTMS 0 0 0 8511 79852.046875 0.6039805153203063 405 -10.042388916015625 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.4519 0 0 257.9953941165167 0 257.9953941165167 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.4519 - 1 + NaN NaN 100256 NaN 6018 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8516 44.477 NaN 217710 35 0 22008 0.261 -1 RYLSPKYIKMF 11 62 487.93560805191515 1460.7849947559455 3 487.93536376953125 MULTI HCD FTMS 0 0 0 8511 76697.546875 0.18755213556760636 34 -0.8850631713867188 5 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 20.410884301107757 0.2792417076485638 2 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 35.745 0 0 2.447 0 0 744.4257867582536 0 744.4257867582536 0 32.981187280073065 0 0 0 1.3807196863200843 0 0 0 Y{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.447 + + 47 + NaN NaN 112571.1 NaN 6019 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8517 44.48 NaN 134620 35 0 17433 0.261 -1 LYNRTMVQL 9 45 577.305013915565 1152.59547489793 2 577.8067626953125 MULTI HCD FTMS 0 0 0 8511 20163.322265625 0.47776828849748665 1 -0.03285980224609375 6 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 32.78568957990786 0.09846250359632436 2 VQ{I|L} 3 -1 34.253 0 0 2.9718 0 0 794.3733336459352 0 794.3733336459352 0 31.15356566548286 0 0 0 0.805462187404089 0 0 0 VQ{I|L} 2.9718 + + 66 NaN NaN 103276 NaN 6020 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8518 44.483 NaN 148550 35 0 12381 0.261 -1 SASGDEMVSL 10 58 506.218446997733 1010.422341062266 2 506.2187194824219 MULTI HCD FTMS 0 0 0 8511 58050.14453125 1 0 0 7 Oxidation (M) _SASGDEM(Oxidation (M))VSL_ ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1 34.40172386719151 0.19398797222092762 2 VS{I|L} 3 -1 37.307 0 0 3.6922 0 0 693.2282582013687 0 693.2282582013687 0 6.505149978319906 0 0 0 0.8807196863200843 0 0.3807196863200844 0 VS{I|L} 3.6922 + + 122 NaN NaN 103284.4 NaN 6021 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8519 44.486 NaN 49467 35 0 5686.2 0.261 + 30997 VSETVGIPR 9 34 479.2715576014203 956.5285622696406 2 479.27105712890625 MULTI HCD FTMS 0 0 0 8511 32135.6796875 0.6422906854767814 4 -0.12173080444335938 8 Unmodified _VSETVGIPR_ ENSG00000282936|ENST00000634965|unknown 10.073929032068715 0.27331982688540024 2 V 1 8 5.0886 0 0 0.53199 0 0 441.2688099276468 413.16709314517817 854.435903072825 0 0 0 0 0 0.5 0 0 0 + V 0.53199 + + 8 + NaN NaN 92153 NaN 6022 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8520 44.49 NaN 68455 35 0 17764 0.261 + 9851 HYTGTPDI 8 32 452.2134890555285 902.412425177857 2 452.21270751953125 MULTI HCD FTMS 0 0 0 8511 22721.90234375 0.6563594391839163 -1 0.01953887939453125 9 Unmodified _HYTGTPDI_ REV__ENSG00000104833|ENST00000264071|TUBB4A;REV__ENSG00000188229|ENST00000340384|TUBB4B;REV__ENSG00000196230|ENST00000327892|TUBB;REV__ENST00000518096.1_1_8:30209523-30210210:+|nuORF;REV__ENST00000604929.1_1_9:140135770-140136775:+|nuORF;REV__TUBB|p.E27K|1|0.33|ENSG00000196230|chr6:30722558-30722558|G/A|missense_variant 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91953.8 NaN 6023 2495 8511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8522 44.495 NaN 227190 35 0 29299 0.327 + 12483 KQYADVEGF 9 56 528.7534215722214 NaN 0 528.753173828125 PEAK HCD FTMS 0 0 0 8521 94102.6484375 0.1280024599142792 7 -0.18706130981445312 1 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 59.368380827593164 0.026574524365726337 2 YADVEG 6 3 55.978 0 0 5.3035 0 0 256.1550931164682 162.0560701959594 418.21116331242763 0 0 0 0 0 2.973197507588033 0 0.7396518287104438 0 + YADVEG 5.3035 + + 76 + NaN NaN 118907.7 NaN 6024 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8523 44.499 NaN 257650 35 0 63344 0.262 + 24639 RYLQKIEEF 9 49 409.223964805665 1224.650065017195 3 409.2239990234375 MULTI HCD FTMS 0 0 0 8521 47996.97265625 0.4367745958033864 2 -0.06256484985351562 2 Unmodified _RYLQKIEEF_ ENSG00000026559|ENST00000371571|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant;nc|ENSG00000026559|Q9UIX4-2|KCNG1 34.40172386719151 0.0910440009062557 2 E{M(Oxidation (M))|F} 2 7 33.711 0 0 2.7527 0 0 930.5285882405375 0 930.5285882405375 0 29.731975075880328 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + E{M(Oxidation (M))|F} 2.7527 + + 18 NaN NaN 123986.3 NaN 6025 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8524 44.503 NaN 113480 35 0 7807.6 0.261 -1 VMSQALKATF 10 47 556.2941079331289 1110.5736629330577 2 556.2943115234375 MULTI HCD FTMS 0 0 0 8521 65929.1328125 0.22706292669166397 13 -0.33829498291015625 3 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 32.89776655970281 0.20703914202719614 2 MKAT{M(Oxidation (M))|F} 5 -1 47.167 0 0 4.2471 0 0 514.2823963849625 0 514.2823963849625 0 38.750612633917 0 0 0 1.4247425010840047 0 0.4247425010840047 0 MKAT{M(Oxidation (M))|F} 4.2471 - 86 NaN NaN 103186.9 NaN 6026 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8525 44.506 NaN 157200 35 0 18721 0.262 -1 0 47 471.3541364712893 470.3468600046893 1 471.35382080078125 MULTI HCD FTMS 0 0 0 8521 64761.41796875 0.18357684201985025 35 -0.9081687927246094 4 NaN NaN 2 {I|L}{I|L}{I|L}{I|L} 4 -1 + 21.427 0 0 4.5555 4.5555 89.309 0 0 0 19.208187539523745 2.843181179205061 2.843181179205061 21.42667503568731 0 0 0 0 0 {I|L}{I|L}{I|L}{I|L} 4.5555 - 7 + NaN NaN 117857.4 NaN 6027 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8526 44.509 NaN 130000 35 0 15941 0.261 -1 LYNRTMVQL 9 43 577.305013915565 1152.59547489793 2 577.3055419921875 MULTI HCD FTMS 0 0 0 8521 32903.64453125 0.42912879142179833 3 -0.08887100219726562 5 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C 12.240655878213236 0.2545997876781172 2 VQ{I|L} 3 -1 30.445 0 0 2.6415 0 0 794.3766346662125 0 794.3766346662125 0 25.84121882396211 0 0 0 0 0 0 0.4247425010840047 VQ{I|L} 2.6415 + + 19 NaN NaN 102020.9 NaN 6028 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8527 44.513 NaN 111130 35 0 17627 0.263 -1 DLPHPGSF 8 48 456.2148499636086 NaN 0 456.226318359375 PEAK HCD FTMS 0 0 0 8521 16848.826171875 0.8167213650209822 1 -0.029659271240234375 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DLPHPGSF_ ENST00000603284.1_1_8:77316524-77316740:+|nuORF 8.593279151180031 0.38822285293237185 2 Y 1 -1 8.9794 0 0 0.9863 0 0 318.1332999254609 426.20136438541255 744.3346643108734 0 0 0 0 0 0.5 0 0 0 Y 0.9863 - 10 + NaN NaN 102782.7 NaN 6029 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8528 44.516 NaN 58685 35 0 14693 0.261 -1 FWCENCLE 8 32 579.223817017164 1156.433081101128 2 579.2239379882812 MULTI HCD FTMS 0 0 0 8521 12831.5859375 0.45627367869981517 3 -0.08887100219726562 7 2 Carbamidomethyl (C) _FWC(Carbamidomethyl (C))ENC(Carbamidomethyl (C))LE_ ENSG00000106780|ENST00000373930|MEGF9 0.6014990680409731 0.5410999795511968 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.39813 0 0 696.2636607903843 297.11045252017817 993.3741133105625 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.39813 + + 2 + NaN NaN 95207.6 NaN 6030 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8529 44.519 NaN 51406 35 0 4437.9 0.261 -1 KFDPMGKYF 9 38 574.7752512961835 NaN 0 574.7756958007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _KFDPM(Oxidation (M))GKYF_ ENSG00000051596|ENST00000265097|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;nc|ENSG00000051596|Q96J01-2|THOC3 3.2813086475875832 0.27934607848455584 2 T 1 -1 9.6041 0 0 0.83693 0 0 656.3097361355325 387.1677340143188 1043.4774701498513 0 0 0 0 0 0.5 0 0 0 T 0.83693 - 6 + NaN NaN 90125.5 NaN 6031 2496 8521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8531 44.524 NaN 154110 35 0 13397 0.327 -1 KMPKFKMPSF 10 63 419.555750436048 1255.6454219083441 3 419.5555725097656 MULTI HCD FTMS 0 0 0 8530 75652.1484375 0.17922125586054186 -20 0.597259521484375 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 19.625955294349634 0.3275374527965692 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.6913 0 0 1090.5664099227956 0 1090.5664099227956 0 1.7866624821563448 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 9 + NaN NaN 103468.5 NaN 6032 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8532 44.529 NaN 64703 35 0 7127 0.261 + 13089 KYLEKYYNL 9 45 617.3290577735486 1232.643562613897 2 617.3294677734375 MULTI HCD FTMS 0 0 0 8530 46502.7265625 1 0 0 2 Unmodified _KYLEKYYNL_ ENSG00000196611|ENST00000315274|MMP1 14.405379775768559 0.2358970535022398 2 KY{I|L} 3 6 30.445 0 0 2.4699 0 0 0 825.3818453424436 825.3818453424436 23.455612550363796 0 0 0 0 0.4247425010840047 0 0 0 + KY{I|L} 2.4699 + + 13 + NaN NaN 91577.9 NaN 6033 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8533 44.532 NaN 149700 35 0 21751 0.262 + 32744 WQRHGNLL 8 41 512.2769382051831 1022.5393234771662 2 512.27685546875 MULTI HCD FTMS 0 0 0 8530 46365.5703125 0.4550068406742003 -2 0.06251907348632812 3 Unmodified _WQRHGNLL_ ENSG00000183665|ENST00000328599|TRMT12 8.593279151180031 0.5292430274356741 2 Q{I|L}{I|L} 3 5 29.693 0 0 2.9038 0 0 650.3024502687975 0 650.3024502687975 0 24.20818753952375 0 0 0 0.5 0 0 0 Q{I|L}{I|L} 2.9038 - 9 NaN NaN 118965.1 NaN 6034 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8534 44.536 NaN 313970 35 0 44686 0.261 + -1 YALLTAMKD 9 59 521.2687918132401 1040.5230306932801 2 521.2554321289062 MULTI HCD FTMS 0 0 0 8530 13179.6640625 0.38146717465732904 5 -0.14155197143554688 4 Oxidation (M) _YALLTAM(Oxidation (M))KD_ REV__ENSG00000196712|ENST00000358273|NF1;REV__ENST00000493220.5_2_17:29556858-29657521:+|nuORF;REV__nc|ENSG00000196712|P21359-2|NF1;REV__nc|ENSG00000196712|P21359-4|NF1;REV__nc|ENSG00000196712|P21359-6|NF1 10.823927491677226 0.26684000660059787 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC 9 -1 42.615 0 0 4.0955 0 0 0 128.0980407893526 128.0980407893526 37.13038415206498 0 0 0 0 0 1.5228787452803376 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC 4.0955 - 113 NaN NaN 135591.6 NaN 6035 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8535 44.539 NaN 141340 35 0 22980 0.261 + 24638 RYLQKIEEF 9 51 613.3321712075281 1224.649789481856 2 613.3314819335938 MULTI HCD FTMS 0 0 0 8530 21251.111328125 0.35666886732087505 5 -0.14155197143554688 5 Unmodified _RYLQKIEEF_ ENSG00000026559|ENST00000371571|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant;nc|ENSG00000026559|Q9UIX4-2|KCNG1 6.2057823575117 0.30397260197431997 2 W 1 9 14.604 0 0 1.1925 0 0 1020.5598216857608 0 1020.5598216857608 0 5.931956078477468 0 0 0 0 0 0 0 W 1.1925 - 11 + NaN NaN 122950.4 NaN 6036 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8536 44.542 NaN 53920 35 0 5473.4 0.261 -1 YPESESIMM 9 31 559.7224742459309 1117.4303955586618 2 559.72119140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.6647 0 0 805.3483143537125 0 805.3483143537125 0 27.55780949711784 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6647 + + 31 NaN NaN 110240.7 NaN 6037 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8537 44.546 NaN 99983 35 0 6072.3 0.261 + 1506 AYVELVHHI 9 46 540.7950916594775 1079.575630385755 2 540.7943115234375 MULTI HCD FTMS 0 0 0 8530 45113.34765625 0.8858890108272522 -1 0.029659271240234375 7 Unmodified _AYVELVHHI_ ENSG00000101391|ENST00000346416|CDK5RAP1;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 70.71552829651908 0.008856681705782516 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}VH[H{I|L}] 9 0 + 80.212 0 0 7.43 7.43 94.293 0 0 0 80.2119811855394 4.762036441594191 4.762036441594191 24.247425010840047 0 2.2302046884880937 2 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}VH[H{I|L}];{I|L}[YG]E{I|L}VH[H{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE[RK]V{[ES]|[DT]|[{I|L}C]};{I|L}[YG]E[RK]V{[ES]|[DT]|[{I|L}C]};{I|L}[WY][RK]V{[ES]|[DT]|[{I|L}C]} 7.43;5.1839;4.3481;2.9586;2.4691 +;-;-;-;- + 90 + NaN NaN 101431.8 NaN 6038 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8538 44.549 NaN 79906 35 0 19085 0.261 + 7133 FSAYPCFE 8 37 482.1990338308385 NaN 0 482.1986999511719 PEAK HCD FTMS 0 0 0 8530 16906.00390625 0.8059608825809821 2 -0.05921173095703125 8 Unmodified _FSAYPCFE_ REV__ENSG00000134504|ENST00000580059|KCTD1 2.577480529830294 0.38822285293237185 2 A 1 -1 0.9691 0 0 0.1007 0 0 584.4824659997646 303.8469332330688 888.3293992328333 0 0 0 0 0 0 0 0 0 A 0.1007 + + 2 + NaN NaN 92888.2 NaN 6039 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8539 44.552 NaN 41428 35 0 5415.7 0.261 -1 QFPYNCILL 9 28 584.2947998046875 NaN 0 584.2947998046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _QFPYNC(Carbamidomethyl (C))ILL_ ENSG00000173585|ENST00000357632|CCR9;nc|ENSG00000173585|P51686-2|CCR9 1.844237919475145 0.28630992268396543 2 N 1 -1 4.6041 0 0 0.39467 0 0 600.8791374982437 448.6184481256469 1049.4975856238907 0 0 0 0 0 0 0 0 0 N 0.39467 + + 3 + NaN NaN 92542.8 NaN 6040 2497 8530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8541 44.557 NaN 294320 35 0 84406 0.327 + 24834 RYPSLWRRL 9 49 416.2436918347977 1245.7092461045931 3 416.2432556152344 MULTI HCD FTMS 0 0 0 8540 72045.09375 0.05236951388804336 37 -0.9473304748535156 1 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 5.047519993296601 0.31275309318234606 2 {I|L}{M(Oxidation (M))|F} 2 8 9.4505 0 0 0.75864 0 0 59.0496482032948 923.5185455523732 982.5681937556681 0 0 0 0 0 0.3252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 0.75864 - 20 + NaN NaN 133030 NaN 6041 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8542 44.562 NaN 188420 35 0 34718 0.261 + 30175 VHCGWVAV 8 48 435.71799247809645 869.4214320229929 2 435.7177734375 MULTI HCD FTMS 0 0 0 8540 66515.8515625 0.3504861424656686 3 -0.07226943969726562 2 Unmodified _VHCGWVAV_ REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF 11.114462752807354 0.5120171699125776 2 [HV]MTVH{M(Oxidation (M))|F} 7 -1 + 72.356 0 0 8.3223 8.3223 87.966 0 0 0 0.11337255778946087 0.11337255778946087 0.11337255778946087 0.11337255778946087 0 1.6382104921644451 1.3010299956639813 0.4247425010840047 0 [HV]MTVH{M(Oxidation (M))|F};VHMVTH{M(Oxidation (M))|F} 8.3223;8.3093 -;- 74 NaN NaN 117284.4 NaN 6042 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8543 44.565 NaN 112560 35 0 8943.8 0.261 + 1412 AYQKQPTIF 9 43 548.2953751411394 1094.5761973490787 2 548.2954711914062 MULTI HCD FTMS 0 0 0 8540 58844.00390625 0.6416648336304528 2 -0.049404144287109375 3 Unmodified _AYQKQPTIF_ ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 49.55428908609986 0.03219431099695407 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F} 9 0 + 65.053 0 0 5.9432 5.9432 90.301 0 0 0 25.642492736872597 64.77567890248748 25.642492736872597 13.424778212679485 0 2.0682503180159344 2 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QKQ[TP]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Q{I|L}]{[NV]|[RG]}{I|L}{M(Oxidation (M))|F} 5.9432;4.7168 +;- + 82 NaN NaN 104092.3 NaN 6043 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8544 44.569 NaN 183990 35 0 12577 0.261 + 14517 LFDHAVSKF 9 59 532.2821082305235 1062.5496635278469 2 532.281494140625 MULTI HCD FTMS 0 0 0 8540 61401.20703125 0.8625156247770829 -2 0.06256484985351562 4 Unmodified _LFDHAVSKF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 53.31671820480216 0.026930930319421505 2 HAVSK{M(Oxidation (M))|F} 6 3 64.998 0 0 6.1172 0 0 375.18184695537906 0 375.18184695537906 0 44.195925227640984 0 0 0 1.9604093769761874 0 0.4247425010840047 0 + HAVSK{M(Oxidation (M))|F} 6.1172 + + 146 NaN NaN 122916.3 NaN 6044 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8545 44.572 NaN 180550 35 0 25117 0.261 + -1 YSLTSQRPIC 10 39 612.804658136056 1223.594763338912 2 612.8032836914062 MULTI HCD FTMS 0 0 0 8540 15156.9169921875 0.3851275783181524 1 -0.02630615234375 5 Carbamidomethyl (C) _YSLTSQRPIC(Carbamidomethyl (C))_ REV__ENSG00000143278|ENST00000367412|F13B 3.2813086475875832 0.45793521633868084 2 D[DC]W 4 -1 11.198 0 0 0.91516 0 0 686.4818592755875 0 686.4818592755875 0 11.197887582883936 0 0 0 0 0 0 0 D[DC]W 0.91516 - 3 NaN NaN 102819.9 NaN 6045 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8546 44.575 NaN 66706 35 0 8004.6 0.264 + 6984 FPVTTAVAA 9 35 438.74463761253145 875.4747222918629 2 438.7442626953125 MULTI HCD FTMS 0 0 0 8540 30789.287109375 0.8893503163929244 4 -0.10864639282226562 6 Unmodified _FPVTTAVAA_ REV__nc|ENSG00000079156|Q9BZF3-3|OSBPL6;REV__nc|ENSG00000079156|Q9BZF3-5|OSBPL6 11.640296217721598 0.25978676193971967 2 VPE 3 -1 27.307 0 0 3.1191 0 0 532.2841053693375 0 532.2841053693375 0 20.31743128760553 0 0 0 0.3494850021680094 0 0 0 VPE 3.1191 - 20 NaN NaN 98211.6 NaN 6046 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8547 44.579 NaN 66491 35 0 6519.2 0.261 -1 VECTHSFI 8 36 496.7285130313947 991.4424731295894 2 496.7278137207031 MULTI HCD FTMS 0 0 0 8540 10095.01171875 0.4375822269000192 1 -0.02630615234375 7 Carbamidomethyl (C) _VEC(Carbamidomethyl (C))THSFI_ ENSG00000104356|ENST00000401707|POP1 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6193 0 0 713.2798329084 0 713.2798329084 0 25.969100130080562 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6193 + + 3 NaN NaN 104976.6 NaN 6047 2498 8540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8549 44.584 NaN 798570 35 0 107550 0.327 + 9484 HPWEVMPEL 9 74 569.2735448636703 1136.5325367941405 2 569.2730712890625 MULTI HCD FTMS 0 0 0 8548 206395.015625 0.599701077459537 8 -0.1966705322265625 1 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 34.10243960390752 0.09241788333544565 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3290548984048 752.3290548984048 -3.3624247601804385 0 -3.3624247601804385 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 905 + NaN NaN 215885.6 NaN 6048 2499 8548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8550 44.588 NaN 409320 35 0 43559 0.261 + 16199 LPVNDEHVTV 10 72 561.7926895262436 1121.5708261192872 2 561.7926025390625 MULTI HCD FTMS 0 0 0 8548 197778.6875 0.8059143598252407 -2 0.05921173095703125 2 Unmodified _LPVNDEHVTV_ ENSG00000145386|ENST00000274026|CCNA2 107.5634045930896 5.418360979759365E-05 2 [{I|L}P]VNDEHVTV 10 0 + 93.44 0 0 8.3312 8.3312 90.482 0 0 0 15.65191703911681 9.827796776480469 9.827796776480469 6.276362525516532 0 2.0994850021680094 1.3979400086720375 0.3807196863200844 0.3054621874040891 + + [{I|L}P]VNDEHVTV;[{I|L}P]VNDEHS{I|L}V;[{I|L}P]VNDEHVS{I|L};[{I|L}P]VGGDEHVTV;{I|L}PVNDEHVTV;[{I|L}P]VNDEHSV{I|L};[{I|L}P]VGGDEHS{I|L}V;[{I|L}P]VGGDEHVS{I|L};[{I|L}P]VND[HD]{I|L}TV;[{I|L}P]VGGDEHSV{I|L} 8.3312;7.7716;7.4549;7.2417;6.9356;6.8953;6.6821;6.3655;5.8286;5.8058 +;-;-;-;+;-;-;-;-;- + 437 NaN NaN 148804.8 NaN 6049 2499 8548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8551 44.592 NaN 153260 35 0 9678.1 0.261 + 23673 RQEYLKLEM 9 60 605.3179736400677 1208.6213943469354 2 605.31787109375 MULTI HCD FTMS 0 0 0 8548 90833.1640625 0.6338905219596588 2 -0.045963287353515625 3 Unmodified _RQEYLKLEM_ ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF 14.838274106304384 0.23215694253501695 2 KE{I|L}{M(Oxidation (M))|F}M 5 6 38.488 0 0 3.1844 0 0 542.2958851544937 0 542.2958851544937 0 7.2897845729981725 0 0 0 0 0 0.805462187404089 0 KE{I|L}{M(Oxidation (M))|F}M 3.1844 - 50 NaN NaN 108703.9 NaN 6050 2499 8548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8552 44.595 NaN 65890 35 0 4111.1 0.261 + 18428 MPTTERVTL 9 45 524.2785334661687 1046.5425139991373 2 524.2777709960938 MULTI HCD FTMS 0 0 0 8548 22770.7890625 0.18078373498971584 5 -0.1278228759765625 4 Unmodified _MPTTERVTL_ ENSG00000137752|ENST00000533400|CASP1;nc|ENSG00000137752|P29466-2|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-5|CASP1 9.5439744041441 0.27789851728676895 2 MPTT 4 5 31.938 0 0 3.0518 0 0 0 613.3320406549436 613.3320406549436 10.969100130080562 0 0 0 0 0 0 0 0 + MPTT 3.0518 + + 17 + NaN NaN 95639.1 NaN 6051 2499 8548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8553 44.598 NaN 161250 35 0 35116 0.263 + 23745 RRDWPLHVM 9 44 403.88109967252694 1208.6214696177808 3 404.2153015136719 MULTI HCD FTMS 0 0 0 8548 32477 0.9867333974610413 4 -0.0981903076171875 5 Unmodified _RRDWPLHVM_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 EM 2 8 24.464 0 0 2.0241 0 0 930.5284958402402 0 930.5284958402402 0 21.989700043360187 0 0 0 0.5 0 0 0 EM 2.0241 - 14 + NaN NaN 109418 NaN 6052 2499 8548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8554 44.602 NaN 76792 35 0 5391.4 0.261 + 32891 YAAALSQEL 9 52 483.2506937119522 964.4868344907044 2 483.2498474121094 MULTI HCD FTMS 0 0 0 8548 12913.09765625 0.010217324323316566 26 -0.6612510681152344 6 Unmodified _YAAALSQEL_ REV__nc|ENSG00000287363|X6R8D5|CIMIP3 4.3292370932331545 0.3181982124262546 2 AC{I|L} 3 -1 13.512 0 0 1.401 0 0 659.3500446663923 0 659.3500446663923 0 5.440228147639203 0 0 0 0.3054621874040891 0 0 0 AC{I|L} 1.401 - 9 + NaN NaN 107765.2 NaN 6053 2499 8548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8556 44.607 NaN 660870 35 0 49743 0.327 + 1583 AYVHMVTHF 9 79 552.7682830401682 1103.5220131471362 2 552.7680053710938 MULTI HCD FTMS 0 0 0 8555 327730.0625 0.19115257506275354 6 -0.14730072021484375 1 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 104.79918948944588 0.003791450360204016 2 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 99.135 0 0 8.9835 8.9835 91.857 0 0 0 53.6219583558281 19.493559221610965 19.493559221610965 7.672203223519531 0 2.6677353201839438 2 0.2614393726401688 0 + + AYVHMVTH{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};[HV]MAYVTH{M(Oxidation (M))|F};[HM]VAYVTH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{[DS]|[MA]|[CV]|TT}[{I|L}T]TH{M(Oxidation (M))|F};[HV]MTH{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};[HM]VTH{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};[HT]{[ET]|[MV]}H{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]N{[MG]|[TS]}{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F} 8.9835;8.2882;7.6242;4.6455;4.1717;2.0074;1.6529;1.179;0.74667;0.28489 +;+;-;-;-;-;-;-;-;- + 791 + NaN NaN 180224.2 NaN 6054 2500 8555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8557 44.611 NaN 384270 35 0 99391 0.261 -1 ERGKMEYVF 9 48 587.7825106102198 1173.5504682872395 2 587.7630615234375 MULTI HCD FTMS 0 0 0 8555 11291.68359375 0.5809349454655841 2 -0.05924224853515625 2 Oxidation (M) _ERGKM(Oxidation (M))EYVF_ ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF 19.361941925380144 0.1930734562688509 2 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 -1 49.201 0 0 4.1925 0 0 342.1640797345719 0 342.1640797345719 0 6.249839661946552 0 0 0 0 0 0.4247425010840047 0.3807196863200844 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 4.1925 - 155 NaN NaN 149498.1 NaN 6055 2500 8555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8558 44.615 NaN 96347 35 0 9838.7 0.261 -1 HYMSINDSF 9 32 565.2344560437472 1128.4543591542943 2 565.23388671875 MULTI HCD FTMS 0 0 0 8555 39777.85546875 0.44730508194938345 4 -0.10472488403320312 3 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 15.248480904072842 0.22861284681709862 2 NDS{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.7164 0 0 647.2722421102578 0 647.2722421102578 0 41.938200260161125 0 0 0 1 0 0 0 NDS{M(Oxidation (M))|F} 3.7164 + + 9 NaN NaN 93849.1 NaN 6056 2500 8555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8559 44.618 NaN 205610 35 0 24518 0.261 -1 MPTQEVQEL 9 42 545.7578736481453 1089.5011943630905 2 545.7574462890625 MULTI HCD FTMS 0 0 0 8555 84880.65625 0.5897496998523879 -9 0.263336181640625 4 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 18.373094154950223 0.20161688160436167 2 {[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L} 9 -1 + 44.671 0 0 4.1001 4.1001 83.98 0 0 0 3.9254497678533085 26.638568026386693 3.9254497678533085 6.98970004336018 0 0.8807196863200843 0 0 0 {[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}GG[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]V[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[MD]V[AG]E{I|L} 4.1001;3.4586;3.2549;3.2549;2.6134 -;-;-;-;- 103 NaN NaN 118334.1 NaN 6057 2500 8555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8560 44.621 NaN 101760 35 0 14386 0.261 + -1 QVCYIVCP 8 46 491.2305212095519 980.4464894859038 2 491.2311096191406 MULTI HCD FTMS 0 0 0 8555 30044.37109375 0.27267896367402206 6 -0.14730072021484375 5 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))YIVCP_ REV__ENST00000454568.1_1_3:36211307-36211412:-|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}D[NG]V{M(Oxidation (M))|F} 6 -1 35.674 0 0 3.6386 0 0 317.1591492532851 0 317.1591492532851 0 8.719005324262241 0 0 0 1 0 0.4247425010840047 0 {I|L}D[NG]V{M(Oxidation (M))|F} 3.6386 - 104 + NaN NaN 97972.1 NaN 6058 2500 8555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8561 44.625 NaN 75258 35 0 11843 0.261 + 8632 HEFMEAQPL 9 47 551.255359567163 1100.496166201126 2 551.2547607421875 MULTI HCD FTMS 0 0 0 8555 45067.7890625 0.8912347660655838 3 -0.07509231567382812 6 Unmodified _HEFMEAQPL_ REV__ENSG00000127603|ENST00000564288|MACF1;REV__ENST00000476350.1_1_1:39768622-39838291:+|nuORF;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;REV__MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;REV__nc|ENSG00000127603|Q9UPN3-2|MACF1;REV__nc|ENSG00000127603|Q9UPN3-3|MACF1;REV__nc|ENSG00000127603|Q9UPN3-4|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__nc|ENSG00000127603|Q9UPN3|MACF1 3.5964929083625545 0.32375295897743744 2 E[QP]{I|L} 4 -1 17.703 0 0 1.6086 0 0 615.2460194318375 0 615.2460194318375 0 17.703037561203843 0 0 0 0.5 0 0 0 E[QP]{I|L} 1.6086 - 2 NaN NaN 90537.3 NaN 6059 2500 8555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8563 44.63 NaN 686660 35 0 99123 0.327 + 6791 FPRHIEPEL 9 76 569.3059765056141 1136.5974000780282 2 569.3060913085938 MULTI HCD FTMS 0 0 0 8562 138476.96875 0.34689143521785737 7 -0.177093505859375 1 Unmodified _FPRHIEPEL_ ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B 36.506200033944 0.08138327636155518 2 [EP]{I|L}[TP]{I|L}EPE{I|L} 10 4 + 41.577 0 0 3.658 3.658 81.676 0 0 0 3.252254313053058 16.951687839877888 3.252254313053058 2.429928190999391 0 1.0484550065040281 1.3979400086720375 0 0 [EP]{I|L}[TP]{I|L}EPE{I|L};[EP]{I|L}[TP]{I|L}E{I|L}[EP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F}{I|L}EPE{I|L};[EP]{I|L}[RH]{M(Oxidation (M))|F}PE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F}{I|L}E{I|L}[EP];[EP]{I|L}[RH]{M(Oxidation (M))|F}{I|L}[EP];{[QN]|[E{I|L}]|[KN]}P[TP]{I|L}EPE{I|L};{[QN]|[E{I|L}]|[KN]}P[TP]{I|L}E{I|L}[EP];{[QN]|[E{I|L}]|[KN]}P[RH]{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}P[RH]{M(Oxidation (M))|F}{I|L}[EP] 3.658;3.4442;2.5536;2.5497;2.3398;2.3359;2.2732;2.0594;1.1648;0.95106 -;-;-;-;-;-;-;-;-;- 801 NaN NaN 179412.1 NaN 6060 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8564 44.634 NaN 207400 35 0 20980 0.261 + 31014 VSLLSFYF 8 58 488.26177117987453 NaN 0 488.2703552246094 PEAK HCD FTMS 0 0 0 8562 8001.865234375 0.414700478606251 6 -0.15070724487304688 2 Unmodified _VSLLSFYF_ ENST00000360370.8_1_3:125725252-125725423:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;REV__tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1 9.347437153973935 0.38822285293237185 2 S 1 7 3.9794 0 0 0.40835 0 0 455.2282442038381 429.21955286197505 884.4477970658131 0 0 0 0 0 0 0 0 0 + S 0.40835 + + 9 + NaN NaN 122872.3 NaN 6061 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8565 44.638 NaN 85894 35 0 11065 0.261 -1 FCAIPQVM 8 39 491.2305212095519 980.4464894859038 2 491.22088623046875 MULTI HCD FTMS 0 0 0 8562 17665.599609375 0.16033077807265705 7 -0.177093505859375 3 Carbamidomethyl (C),Oxidation (M) _FC(Carbamidomethyl (C))AIPQVM(Oxidation (M))_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 14.581692164780916 0.48650662947107914 2 V{I|L}D[NG]V{M(Oxidation (M))|F} 7 -1 33.817 0 0 3.4491 0 0 218.07202346015782 0 218.07202346015782 0 12.847813329426288 0 0 0 0.5 0 0 0.4247425010840047 V{I|L}D[NG]V{M(Oxidation (M))|F} 3.4491 - 64 NaN NaN 97399.9 NaN 6062 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8566 44.641 NaN 166590 35 0 32469 0.261 + 18998 NASTDYDL 8 33 449.69274288201854 897.3709328308371 2 449.6924133300781 MULTI HCD FTMS 0 0 0 8562 63315.1171875 0.7360465724570842 -2 0.045963287353515625 4 Unmodified _NASTDYDL_ ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF;ENST00000481985.5_1_22:39710087-39711482:-|nuORF 24.020572477871973 0.4170589785259073 2 YD{I|L} 3 5 40.049 0 0 4.463 0 0 488.18701667048396 0 488.18701667048396 0 36.95046257204389 0 0 0 1.5 0 0.2742275032520141 0 + YD{I|L} 4.463 + + 11 + NaN NaN 108526.4 NaN 6063 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8567 44.644 NaN 127960 35 0 7346.4 0.261 + 4115 ETAMSFVAR 9 57 506.24907813315343 1010.4836033331069 2 506.2493896484375 MULTI HCD FTMS 0 0 0 8562 44115.2265625 0.9852608234979535 2 -0.052227020263671875 5 Unmodified _ETAMSFVAR_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 13.90604991867851 0.24021115267848145 2 [DV]{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}V{[QV]|[N{I|L}]|[RA]|[KV]} 9 2 + 38.605 0 0 3.8204 3.8204 89.555 0 0 0 15.901662231496736 2.630515216535237 2.630515216535237 38.60469979270058 0 0.3252574989159953 1.6989700043360187 0 0 [DV]{[MS]|[{M(Oxidation (M))|F}A]}S{M(Oxidation (M))|F}V{[QV]|[N{I|L}]|[RA]|[KV]} 3.8204 - 59 + NaN NaN 108771.9 NaN 6064 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8568 44.648 NaN 145050 35 0 20520 0.261 + 19345 NPDEFYYKM 9 42 611.7579393102635 1221.501325687327 2 611.7573852539062 MULTI HCD FTMS 0 0 0 8562 61465.921875 0.6562279801527777 -5 0.13483428955078125 6 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 42.312485326615175 0.05472917415473307 2 NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 0 + 64.831 0 0 5.3075 5.3075 92.354 0 0 0 43.86168767277148 7.632192780232785 7.632192780232785 64.83078780285204 0 1.6237125054200234 0 0 0 + + NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 5.3075 + + 45 + NaN NaN 115390.5 NaN 6065 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8569 44.651 NaN 141070 35 0 13548 0.261 + 12484 KQYADVEGF 9 49 528.7534215722214 NaN 0 528.7532348632812 PEAK HCD FTMS 0 0 0 8562 55702.734375 0.0757692492436837 12 -0.3055229187011719 7 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 41.95555342248728 0.07200381670044957 2 GEVDA 5 8 32.295 0 0 3.0597 0 0 165.0708867010423 416.19443689517817 581.2653235962205 0 0 0 0 0 1.4247425010840047 0 0 0 GEVDA 3.0597 - 38 + NaN NaN 108422.7 NaN 6066 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8570 44.654 NaN 80963 35 0 5588.7 0.261 + 1507 AYVELVHHI 9 45 540.7950916594775 1079.575630385755 2 540.7960815429688 MULTI HCD FTMS 0 0 0 8562 35347.27734375 0.6941130771339028 3 -0.08185958862304688 8 Unmodified _AYVELVHHI_ ENSG00000101391|ENST00000346416|CDK5RAP1;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 18.13498045792455 0.20367413111508956 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}V 6 3 37.625 0 0 3.4851 0 0 0 402.19199548892817 402.19199548892817 37.62456261857125 0 0 0 0 0 2 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}V 3.4851 + + 16 + NaN NaN 97467.5 NaN 6067 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8571 44.657 NaN 41965 35 0 4350.5 0.262 + -1 AMPMYDSS 8 36 459.1719741955587 NaN 0 459.1719665527344 PEAK HCD FTMS 0 0 0 8562 13739.8115234375 0.6824132095981971 1 -0.036376953125 9 Oxidation (M) _AM(Oxidation (M))PMYDSS_ REV__ENSG00000133124|ENST00000372129|IRS4;REV__nc|ENSG00000133124|O14654|IRS4 0.7936320650641473 0.38822285293237185 2 A 1 -1 0.48455 0 0 0.052879 0 0 476.5366536139705 365.72675501041255 842.263408624383 0 0 0 0 0 0 0 0 0 A 0.052879 + + 1 + NaN NaN 82209.2 NaN 6068 2501 8562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8573 44.666 NaN 463370 35 0 93376 0.327 + -1 HHFLPMLL 8 76 512.2769382051831 1022.5393234771662 2 512.7926025390625 MULTI HCD FTMS 0 0 0 8572 44052.53125 0.8484751452627746 3 -0.058483123779296875 1 Oxidation (M) _HHFLPM(Oxidation (M))LL_ REV__ENST00000539107.5_2_12:28343406-28458716:+|nuORF;REV__ENST00000545737.5_1_12:28410092-28458713:+|nuORF 17.086550045450526 0.4680768486079041 2 Q{I|L}{I|L} 3 -1 21.783 0 0 2.1303 0 0 650.30278212715 0 650.30278212715 0 4.40228147639203 0 0 0 0.4247425010840047 0 0 0 Q{I|L}{I|L} 2.1303 - 217 NaN NaN 154705.5 NaN 6069 2502 8572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8574 44.67 NaN 174570 35 0 24084 0.261 -1 YDDMAACM 8 50 476.14864304767264 950.2827331621453 2 476.14837646484375 MULTI HCD FTMS 0 0 0 8572 29399.916015625 0.4638253523456421 -1 0.036376953125 2 2 Oxidation (M) _YDDM(Oxidation (M))AACM(Oxidation (M))_ ENSG00000164924|ENST00000395958|YWHAZ;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENST00000517727.5_1_8:101936341-101962760:-|nuORF 0.7936320650641473 0.540814922690045 2 CPV{I|L} 4 -1 9.4247 0 0 0.99178 0 0 520.0636607517922 0 520.0636607517922 0 3.9401626154040787 0 0 0 0.27422750325201406 0 0 0 CPV{I|L} 0.99178 - 13 + NaN NaN 116040.8 NaN 6070 2502 8572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8575 44.674 NaN 107640 35 0 8948.6 0.261 -1 HYMSINDSF 9 43 565.2344560437472 1128.4543591542943 2 565.2341918945312 MULTI HCD FTMS 0 0 0 8572 32137.408203125 0.3613876575431016 6 -0.140716552734375 3 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 26.268140514670165 0.13340543277302316 2 NDS{M(Oxidation (M))|F} 4 -1 43.928 0 0 3.8927 0 0 647.273241111525 0 647.273241111525 0 43.92790030352131 0 0 0 1.5 0 0 0 NDS{M(Oxidation (M))|F} 3.8927 + + 12 NaN NaN 99365.7 NaN 6071 2502 8572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8576 44.677 NaN 114070 35 0 9587.7 0.261 + 19404 NPFTKEAAL 9 50 495.76621380217506 989.5178746711501 2 495.76593017578125 MULTI HCD FTMS 0 0 0 8572 41098.81640625 0.39368738728720115 -4 0.10864639282226562 4 Unmodified _NPFTKEAAL_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2 32.037481411007896 0.10189719824197178 2 NP{M(Oxidation (M))|F}T 4 5 39.24 0 0 3.9656 0 0 0 527.2827852838499 527.2827852838499 13.2711470149615 0 0 0 0 0.7302046884880937 0 0 0 + NP{M(Oxidation (M))|F}T 3.9656 + + 37 + NaN NaN 101404.9 NaN 6072 2502 8572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8578 44.682 NaN 1168200 35 0 111280 0.327 + 24490 RYLEGTSCI 9 79 521.2552442733023 1040.4959356134045 2 521.255126953125 MULTI HCD FTMS 0 0 0 8577 660418.125 0.9830931304084733 -2 0.052227020263671875 1 Unmodified _RYLEGTSCI_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 83.42873516780209 0.004742894019233849 2 [YR]{I|L}EGTSC{I|L} 9 0 + 80.684 0 0 7.7544 7.7544 90.395 0 0 0 3.2568864632742844 41.934589278552124 3.2568864632742844 8.085456211725202 0 2.5356668758921828 0 0.8494850021680094 0 + + [YR]{I|L}EGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGEVVC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGE{I|L}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]TSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGC{[MG]|[TS]}{I|L};[YR]{I|L}EGC{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEC(Carbamidomethyl (C)){[MG]|[TS]}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q[KS]TSC{I|L};[YR]CGE{I|L}{[MG]|[TS]}{I|L} 7.7544;6.9773;6.8847;6.7708;4.9376;4.7572;4.1202;4.0105;3.9315;3.8952 +;-;-;-;-;-;-;-;-;- + 1362 NaN NaN 260488.3 NaN 6073 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8579 44.686 NaN 189030 35 0 15694 0.262 -1 KMPKFKMPSF 10 58 419.555750436048 1255.6454219083441 3 419.5558166503906 MULTI HCD FTMS 0 0 0 8577 81557.734375 0.19321169169311453 -14 0.3878593444824219 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 18.721224879955976 0.3359999958351898 2 S{M(Oxidation (M))|F} 2 -1 21.722 0 0 1.7299 0 0 1003.5338781845145 0 1003.5338781845145 0 16.237125054200234 0 0 0 0.4247425010840047 0 0 0 S{M(Oxidation (M))|F} 1.7299 + + 24 + NaN NaN 127535.1 NaN 6074 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8580 44.69 NaN 304270 35 0 68022 0.261 + 24835 RYPSLWRRL 9 63 416.2436918347977 1245.7092461045931 3 416.243408203125 MULTI HCD FTMS 0 0 0 8577 57087.19140625 0.04149662811951021 42 -1.0743522644042969 3 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 13.51866281300042 0.24355809131986753 2 RY 2 7 14.737 0 0 1.183 0 0 0 923.5216525315041 923.5216525315041 1.2422095002850142 0 0 0 0 0.3054621874040891 0 0 0 + RY 1.183 + + 32 + NaN NaN 128993.4 NaN 6075 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8581 44.693 NaN 199400 35 0 63595 0.261 + 9283 HPNEGALVL 9 39 475.258555670811 948.502558408422 2 475.258544921875 MULTI HCD FTMS 0 0 0 8577 86521.7734375 0.7557955448766245 -1 0.015850067138671875 4 Unmodified _HPNEGALVL_ ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 17.11289562659939 0.2125047172822487 2 {I|L}V{I|L} 3 6 34.693 0 0 3.6576 0 0 605.2579212873062 0 605.2579212873062 0 21.620768972555595 0 0 0 0.8494850021680094 0 0 0 + {I|L}V{I|L} 3.6576 + + 14 NaN NaN 124502.4 NaN 6076 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8582 44.697 NaN 176230 35 0 14930 0.261 + -1 CCCLCSDETSC 11 42 612.1806373331963 NaN 0 612.1809692382812 PEAK HCD FTMS 0 0 0 8577 23218.166015625 0.6082374138044304 -26 0.7546615600585938 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))CCLCSDETSC_ REV__MDFI|p.S194T|1|0.18|ENSG00000112559|chr6:41653414-41653414|T/A|missense_variant 2.9952420565917617 0.33362350433860827 2 PDE{M(Oxidation (M))|F}YY 6 -1 33.448 0 0 2.7364 0 0 114.88965066749104 290.1177157037719 405.00736637126295 0 0 0 0 0 0 0 0.3807196863200844 0 PDE{M(Oxidation (M))|F}YY 2.7364 - 48 + NaN NaN 104528.5 NaN 6077 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8583 44.7 NaN 60582 35 0 8971.8 0.264 + 26297 SRPVPENWFSF 11 35 455.89203020465726 1364.6542612141718 3 455.89178466796875 MULTI HCD FTMS 0 0 0 8577 13934.31640625 0.41502546974735255 6 -0.15123367309570312 6 Unmodified _SRPVPENWFSF_ REV__ENSG00000146729|ENST00000322090|NIPSNAP2;REV__nc|ENSG00000146729|O75323-2|NIPSNAP2 6.623454094837244 0.3898724468670146 2 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 -1 30.177 0 0 2.2114 0 0 965.479683432725 0 965.479683432725 0 28.58349385648225 0 0 0 0.5 0 0.3494850021680094 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.2114 + + 15 + NaN NaN 86678.3 NaN 6078 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8584 44.703 NaN 104160 35 0 26780 0.261 + 35244 YVPSHLYHMVF 11 38 464.89706112359295 NaN 0 464.8969421386719 PEAK HCD FTMS 0 0 0 8577 12803.734375 0.7141793233398889 1 -0.029632568359375 7 Unmodified _YVPSHLYHMVF_ ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1 1.3296431237094175 0.3383483288439026 2 {I|L}A 2 10 9.464 0 0 1.0201 0 0 481.52857551691403 259.10874353580317 740.6373190527172 0 0 0 0 0 0 0 0 0 {I|L}A 1.0201 - 9 + NaN NaN 99203.5 NaN 6079 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8585 44.707 NaN 46860 35 0 6785.9 0.261 + 21534 PYLFGFCL 8 35 480.23731871482175 NaN 0 480.2373046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _PYLFGFCL_ L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense 2.8892196856762586 0.38822285293237185 2 V 1 8 6.9897 0 0 0.72926 0 0 257.15565442007477 599.2168673150999 856.3725217351746 0 0 0 0 0 0 0 0 0 V 0.72926 - 1 + NaN NaN 83307.2 NaN 6080 2503 8577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8587 44.712 NaN 131270 35 0 8497.1 0.327 + 34672 YPTKKSSVF 9 50 528.7896426797744 1055.5647324263487 2 528.7896118164062 MULTI HCD FTMS 0 0 0 8586 31367.373046875 0.7169813300237504 1 -0.01300048828125 1 Unmodified _YPTKKSSVF_ REV__ENSG00000127511|ENST00000248054|SIN3B;REV__nc|ENSG00000127511|O75182|SIN3B;REV__SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant 9.38312468134398 0.279288223203164 2 DVEG{M(Oxidation (M))|F} 5 -1 28.928 0 0 2.7405 0 0 490.32434483095636 0 490.32434483095636 0 2.998037644757048 0 0 0 0 0 0 0 DVEG{M(Oxidation (M))|F} 2.7405 - 58 + NaN NaN 107290.1 NaN 6081 2504 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8588 44.716 NaN 62118 35 0 7150.3 0.261 + 32633 WLWLLFAVV 9 38 573.8366405358569 NaN 0 573.8362426757812 PEAK HCD FTMS 0 0 0 8586 5813.15478515625 0.36515490221674113 1 -0.01300048828125 2 Unmodified _WLWLLFAVV_ ENSG00000213714|ENST00000371325|FAM209B 2.302733041254933 0.2840881193086663 2 P 1 9 4.6041 0 0 0.40187 0 0 591.4010509918324 454.1889742486938 1045.5900252405263 0 0 0 0 0 0 0 0 0 P 0.40187 - 1 + NaN NaN 94265.9 NaN 6082 2504 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8589 44.72 NaN 56175 35 0 4863.5 0.261 + 23330 RKCKCTIML 9 44 548.2953751411394 1094.5761973490787 2 548.2957153320312 MULTI HCD FTMS 0 0 0 8586 5594.24365234375 0.06100246727242337 8 -0.20396804809570312 3 Unmodified _RKCKCTIML_ ENST00000416701.6_1_9:95726506-95726539:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90079 NaN 6083 2504 8586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8591 44.725 NaN 444280 35 0 76619 0.327 -1 HPFFKDMSL 9 57 569.2735448636703 1136.5325367941405 2 569.2732543945312 MULTI HCD FTMS 0 0 0 8590 145180.359375 0.4218358552870228 14 -0.388946533203125 1 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ ENSG00000097046|ENST00000234626|CDC7 21.536976647645854 0.1742816388551942 2 HP{M(Oxidation (M))|F} 3 -1 29.693 0 0 2.6126 0 0 0 752.3293421012713 752.3293421012713 11.989700043360187 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 + + 154 + NaN NaN 149906.6 NaN 6084 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8592 44.729 NaN 336040 35 0 21537 0.261 + 16200 LPVNDEHVTV 10 75 561.7926895262436 1121.5708261192872 2 561.7928466796875 MULTI HCD FTMS 0 0 0 8590 111997.6484375 0.4563712818775794 4 -0.10860061645507812 2 Unmodified _LPVNDEHVTV_ ENSG00000145386|ENST00000274026|CCNA2 55.23464941255904 0.058752269732683056 2 {I|L}VTV 4 6 33.686 0 0 3.0034 0 0 691.2999134748062 0 691.2999134748062 0 2.795000083553205 0 0 0 0.5 0 0.3252574989159953 0 {I|L}VTV 3.0034 - 194 NaN NaN 153993.6 NaN 6085 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8593 44.733 NaN 47886 35 0 5836.5 0.261 + -1 HPRVACGKRE 10 34 605.3179736400677 1208.6213943469354 2 605.31884765625 MULTI HCD FTMS 0 0 0 8590 36885.0234375 0.2574067192375155 8 -0.210662841796875 3 Carbamidomethyl (C) _HPRVAC(Carbamidomethyl (C))GKRE_ REV__ENST00000341863.10_1_10:82249024-82267129:+|nuORF;REV__ENST00000429989.7_1_10:82249024-82269226:+|nuORF;REV__ENST00000469149.1_1_10:82249024-82269286:+|nuORF 5.296884461304476 0.4472664531305844 2 HPV 3 -1 28.188 0 0 2.3322 0 0 0 872.4217623346311 872.4217623346311 25.713337517843655 0 0 0 0 0.5 0 0 0 HPV 2.3322 - 9 + NaN NaN 102717.5 NaN 6086 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8594 44.736 NaN 49878 35 0 7358.4 0.261 + 15573 LPDTAADLDW 10 22 558.7619454722096 1115.5093380112191 2 558.7619018554688 MULTI HCD FTMS 0 0 0 8590 19835.291015625 0.4750208354595995 2 -0.05584716796875 4 Unmodified _LPDTAADLDW_ ENSG00000197555|ENST00000381232|SIPA1L1;ENST00000556959.1_1_14:72196918-72202208:+|nuORF;nc|ENSG00000197555|O43166-3|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 5.731851221503515 0.44496410492002586 2 {I|L}PD 3 7 31.198 0 0 2.7967 0 0 0 787.323656175085 787.323656175085 31.197887582883936 0 0 0 0 0.5 0 0 0 + {I|L}PD 2.7967 + + 5 + NaN NaN 88348.1 NaN 6087 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8595 44.739 NaN 134570 35 0 10593 0.261 + 20906 PKHYGDTTL 9 42 516.261387797855 1030.50822266251 2 516.2608642578125 MULTI HCD FTMS 0 0 0 8590 32543.814453125 0.8988829368917715 6 -0.1646728515625 5 Unmodified _PKHYGDTTL_ ENSG00000177354|ENST00000374144|C10orf71;nc|ENSG00000177354|Q711Q0-3|CEFIP 6.2057823575117 0.30397260197431997 2 T{I|L} 2 7 22.959 0 0 2.2279 0 0 798.3625355451187 0 798.3625355451187 0 22.95880017344075 0 0 0 0 0 0.5 0 + T{I|L} 2.2279 + + 1 NaN NaN 102289.4 NaN 6088 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8596 44.742 NaN 95038 35 0 8367.6 0.261 + 14518 LFDHAVSKF 9 42 532.2821082305235 1062.5496635278469 2 532.2822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LFDHAVSKF_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 10.073929032068715 0.27331982688540024 2 SK{M(Oxidation (M))|F} 3 6 19.041 0 0 1.792 0 0 682.3424549787125 0 682.3424549787125 0 15.061668675368626 0 0 0 0 0 0 0 + SK{M(Oxidation (M))|F} 1.792 + + 8 NaN NaN 96419.7 NaN 6089 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8597 44.746 NaN 73575 35 0 11914 0.261 + 15568 LPDQTSQDL 9 41 508.7481914509742 1015.4818299687485 2 508.7481994628906 MULTI HCD FTMS 0 0 0 8590 15411.1435546875 0.13538285672126815 -8 0.20003509521484375 7 Unmodified _LPDQTSQDL_ ENSG00000169857|ENST00000306730|AVEN 7.608950283845883 0.29333554423920943 2 D{I|L} 2 7 25.969 0 0 2.5573 0 0 769.3615589826187 0 769.3615589826187 0 25.255762612236904 0 0 0 0.5 0 0 0 + D{I|L} 2.5573 + + 6 NaN NaN 93737.9 NaN 6090 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8598 44.749 NaN 33308 35 0 4736.9 0.261 + -1 KELILHGCVC 10 34 614.8147797811072 1227.6150066290143 2 614.8146362304688 MULTI HCD FTMS 0 0 0 8590 4562.5888671875 0.15405038787166983 4 -0.10860061645507812 8 2 Carbamidomethyl (C) _KELILHGC(Carbamidomethyl (C))VC(Carbamidomethyl (C))_ REV__ENSG00000129474|ENST00000262713|AJUBA;REV__ENST00000553911.1_2_14:23444960-23445931:-|nuORF 1.4819007175156935 0.4674597685733628 2 C 1 -1 4.6041 0 0 0.37504 0 0 454.9050589745205 666.6802462213499 1121.5853051958704 0 0 0 0 0 0 0 0 0 C 0.37504 + + 1 + NaN NaN 92675.9 NaN 6091 2505 8590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8600 44.754 NaN 965950 35 0 88916 0.327 + 1086 AYIERMNYI 9 68 594.7895743814031 1187.564595829606 2 594.7894897460938 MULTI HCD FTMS 0 0 0 8599 245143.609375 0.9358345282888316 -1 0.029575347900390625 1 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 72.96794272382148 0.008127836904478181 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 77.898 0 0 6.5594 6.5594 87.885 0 0 0 19.878428407800328 16.478174818886373 16.478174818886373 7.2184874961635614 0 2 2 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[QS]|[NT]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{[SA]|[TG]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{[SA]|[TG]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[QS]|[NT]}{[DS]|[MA]|[CV]|TT}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[SA]|[TG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L} 6.5594;5.9516;5.7841;5.7841;5.3727;5.2422;5.1192;4.9887;4.8856;4.6321 +;-;-;-;-;-;-;-;-;- + 277 NaN NaN 231058.6 NaN 6092 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8601 44.759 NaN 255530 35 0 68064 0.261 -1 RADQFEYVM 9 45 587.7632932514695 1173.5120335697388 2 587.763427734375 MULTI HCD FTMS 0 0 0 8599 172662.875 0.5253708738336739 13 -0.3593711853027344 2 Oxidation (M) _RADQFEYVM(Oxidation (M))_ ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H 37.07464296494664 0.07877380486334713 2 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 6 -1 69.954 0 0 5.961 0 0 342.163866111525 0 342.163866111525 0 69.95358466288572 0 0 0 2.8807196863200843 0 0 0 Q{M(Oxidation (M))|F}EYV{M(Oxidation (M))|F} 5.961 + + 71 NaN NaN 122295.4 NaN 6093 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8602 44.762 NaN 237960 35 0 19511 0.261 + 1584 AYVHMVTHF 9 58 552.7682830401682 1103.5220131471362 2 552.7683715820312 MULTI HCD FTMS 0 0 0 8599 126701.5703125 0.07390024352657273 12 -0.323028564453125 3 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 81.61307344734483 0.005330412723537057 2 AYVHMVTH{M(Oxidation (M))|F} 9 0 + 95.851 0 0 8.686 8.686 95.15 0 0 0 69.33652114150576 10.642492736872597 10.642492736872597 15 0 2.1237125054200234 2 0 0 + + AYVHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};AYVHM{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}];[HV]M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHM{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}];AYV[MN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[H{I|L}];{M(Oxidation (M))|F}SV[MN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[H{I|L}];{M(Oxidation (M))|F}W[MN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[H{I|L}] 8.686;7.3267;5.3391;4.4345;3.9798;3.2075;1.8483;0.87632 +;-;-;-;-;-;-;- + 237 + NaN NaN 115137.9 NaN 6094 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8603 44.765 NaN 120020 35 0 8923.2 0.261 + 16008 LPRGLSWK 8 44 478.7875022523348 955.5604515714696 2 478.786865234375 MULTI HCD FTMS 0 0 0 8599 51164.41796875 0.31459466519559015 -5 0.1244354248046875 4 Unmodified _LPRGLSWK_ REV__ENSG00000196639|ENST00000431010|HRH1 4.3292370932331545 0.5355693454741696 2 [YK]QV 4 -1 19.182 0 0 2.0075 0 0 0 434.2526033990844 434.2526033990844 12.219712763997562 0 0 0 0 0.3252574989159953 0 0 0.4247425010840047 [YK]QV 2.0075 - 32 + NaN NaN 120395.6 NaN 6095 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8604 44.769 NaN 87044 35 0 10666 0.261 + 23685 RQKRRRRKHK 10 50 483.64664983829203 1447.9181201150761 3 483.64678955078125 MULTI HCD FTMS 0 0 0 8599 23150.470703125 0.7780255443288252 -8 0.19670486450195312 5 Unmodified _RQKRRRRKHK_ REV__ENSG00000107404|ENST00000378888|DVL1;REV__nc|ENSG00000107404|O14640-2|DVL1 0 0.4753037046562868 2 N 1 -1 5.4846 0 0 0.37879 0 0 749.5192711655287 581.343276856694 1330.8625480222227 0 0 0 0 0 0 0 0 0 N 0.37879 - 4 + NaN NaN 107850.8 NaN 6096 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8605 44.772 NaN 109030 35 0 10212 0.261 -1 IPEEEQMGL 9 52 531.2442173979044 1060.4738818626088 2 531.732177734375 MULTI HCD FTMS 0 0 0 8599 8341.2783203125 0.4426462772076995 -3 0.07220840454101562 6 Oxidation (M) _IPEEEQM(Oxidation (M))GL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9 13.042465956692817 0.2476723265019929 2 Q{M(Oxidation (M))|F}G{I|L} 4 -1 30.706 0 0 2.8955 0 0 597.263963767775 0 597.263963767775 0 26.726759565325295 0 0 0 0.805462187404089 0 0 0 Q{M(Oxidation (M))|F}G{I|L} 2.8955 + + 48 NaN NaN 102252.7 NaN 6097 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8606 44.775 NaN 70780 35 0 5716.8 0.261 + 25356 SEAEQTLRF 9 46 540.7692375636124 1079.5239221940246 2 540.7954711914062 MULTI HCD FTMS 0 0 0 8599 19330.478515625 0.6469186797511 2 -0.0526580810546875 7 Unmodified _SEAEQTLRF_ ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 17.11289562659939 0.2125047172822487 2 R{M(Oxidation (M))|F} 2 7 19.196 0 0 1.7782 0 0 758.3444921176559 0 758.3444921176559 0 5.485775332874281 0 0 0 0.4247425010840047 0 0 0 + R{M(Oxidation (M))|F} 1.7782 + + 14 + NaN NaN 99768.9 NaN 6098 2506 8599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8608 44.78 NaN 561560 35 0 67348 0.327 + 13931 KYQPRIAVF 9 80 561.3268619833847 1120.6391710335693 2 561.3269653320312 MULTI HCD FTMS 0 0 0 8607 305070.03125 0.5323923459118872 -4 0.098480224609375 1 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 100.37149154755038 0.004254194004462789 2 {[HG]|PP}PQ[RP]{I|L}AV{M(Oxidation (M))|F} 10 3 + 53.471 0 0 4.7715 4.7715 83.151 0 0 0 2.724928274552596 14.970931420853262 2.724928274552596 2.724928274552596 0 1.7302046884880937 0 0 1.5356668758921828 {[HG]|PP}PQ[RP]{I|L}AV{M(Oxidation (M))|F};[YK]Q[RP]{I|L}AV{M(Oxidation (M))|F};[YK][AG][RP]{I|L}AV{M(Oxidation (M))|F};{[HG]|PP}P[AG][RP]{I|L}AV{M(Oxidation (M))|F};[YQ]K[RP]{I|L}AV{M(Oxidation (M))|F} 4.7715;4.5283;3.7066;3.5746;3.2051 -;+;-;-;- + 465 NaN NaN 169555.1 NaN 6099 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8609 44.785 NaN 163660 35 0 34444 0.262 + 18999 NASTDYDL 8 36 449.69274288201854 897.3709328308371 2 449.6927795410156 MULTI HCD FTMS 0 0 0 8607 53868.95703125 0.6262337170958823 4 -0.10882568359375 2 Unmodified _NASTDYDL_ ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF;ENST00000481985.5_1_22:39710087-39711482:-|nuORF 13.90604991867851 0.4914777452512057 2 YD{I|L} 3 5 36.198 0 0 4.0338 0 0 488.1842518537125 0 488.1842518537125 0 21.593793813122062 0 0 0 1 0 0 0 + YD{I|L} 4.0338 + + 10 NaN NaN 104789.9 NaN 6100 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8610 44.788 NaN 140400 35 0 21469 0.261 -1 RYLSPKYIKMF 11 46 487.93560805191515 1460.7849947559455 3 487.93536376953125 MULTI HCD FTMS 0 0 0 8607 56877.39453125 0.13908498047848722 46 -1.1796951293945312 3 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 14.170726826480097 0.3336124043171337 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 23.583 0 0 1.6144 0 0 1148.6711469549673 0 1148.6711469549673 0 14.731975075880328 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6144 + + 19 + NaN NaN 104469.2 NaN 6101 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8611 44.792 NaN 127760 35 0 14714 0.261 -1 WKSCSIVM 8 59 505.74306054421567 1009.4715681552314 2 506.75982666015625 MULTI HCD FTMS 0 0 0 8607 8713.2021484375 1 0 0 4 Carbamidomethyl (C) _WKSC(Carbamidomethyl (C))SIVM_ ENSG00000132670|ENST00000399903|PTPRA;nc|ENSG00000132670|P18433-6|PTPRA 2.577480529830294 0.5381683276125971 2 M 1 -1 14.604 0 0 1.4467 0 0 860.4204950124564 0 860.4204950124564 0 2.3805218275135296 0 0 0 0 0 0 0 M 1.4467 + + 6 + NaN NaN 97661.9 NaN 6102 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8612 44.795 NaN 170490 35 0 33863 0.261 + 4002 ERNLAEQSSM 10 53 582.7695862056189 1163.5246194780377 2 582.7699584960938 MULTI HCD FTMS 0 0 0 8607 54634.37890625 0.24497066146207386 -10 0.25588226318359375 5 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 12.240655878213236 0.39661705172222156 2 SV[H{I|L}]SVS{[MS]|[{M(Oxidation (M))|F}A]} 9 -1 41.801 0 0 3.5926 0 0 218.06895644355626 0 218.06895644355626 0 37.19659678281481 0 0 0 1.2302046884880937 0 0 0 SV[H{I|L}]SVS{[MS]|[{M(Oxidation (M))|F}A]} 3.5926 - 170 NaN NaN 113680.8 NaN 6103 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8613 44.798 NaN 70790 35 0 9760.6 0.262 -1 MAVIDGNVM 9 41 491.2222638315022 980.4299747298044 2 491.22137451171875 MULTI HCD FTMS 0 0 0 8607 26539 0.3624040299166992 27 -0.7046356201171875 6 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 39.957323273324995 0.06554068735427583 2 TV{M(Oxidation (M))|F} 3 -1 27.703 0 0 2.8256 0 0 615.2746840577325 0 615.2746840577325 0 -1.7390218772080601 -1.7390218772080601 0 0 0.5 0 0 0 TV{M(Oxidation (M))|F} 2.8256 - 27 + NaN NaN 94720.8 NaN 6104 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8614 44.802 NaN 89068 35 0 7541.3 0.261 -1 HYMSINDSF 9 41 565.2344560437472 1128.4543591542943 2 565.2332763671875 MULTI HCD FTMS 0 0 0 8607 26093.884765625 0.29342776592456765 11 -0.2967567443847656 7 Oxidation (M) _HYM(Oxidation (M))SINDSF_ BICD2-IPPK|1|fusion;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000185963|Q8TD16|BICD2 11.494710602746466 0.2610445893512368 2 NDS{M(Oxidation (M))|F} 4 -1 33.175 0 0 2.9399 0 0 647.2733631818375 0 647.2733631818375 0 29.680475292681265 0 0 0 0.4247425010840047 0 0 0 NDS{M(Oxidation (M))|F} 2.9399 + + 12 NaN NaN 101219.7 NaN 6105 2507 8607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8616 44.807 NaN 516030 35 0 124680 0.327 + 15703 LPERNVPSL 9 70 512.7928028217709 1023.5710527103419 2 512.792724609375 MULTI HCD FTMS 0 0 0 8615 209014.609375 0.7131810813790644 3 -0.08243942260742188 1 Unmodified _LPERNVPSL_ ENST00000327247.9_1_1:155210492-155214452:-|nuORF 63.227496030279354 0.01306643085373406 2 {I|L}PE[RN]VPS{I|L} 9 0 + 66.784 0 0 6.5246 6.5246 88.195 0 0 0 20.90141403485495 8.085208015083424 8.085208015083424 8.085208015083424 0 2.385151878060192 1.2218487496163564 1.1382104921644451 0 + + {I|L}PE[RN]VPS{I|L};[{I|L}P]E[RN]VPS{I|L};[PS][RP]{[SA]|[TG]}{I|L}PS{I|L};[PS][RP][TA]VPS{I|L};[{I|L}P]E[RN]VSP{I|L};[PS][RP]{[SA]|[TG]}{I|L}SP{I|L};[PS][RP][TA]VSP{I|L} 6.5246;5.7347;5.6615;5.4508;4.4941;4.4209;4.2102 +;+;-;-;-;-;- + 245 + NaN NaN 157715.6 NaN 6106 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8617 44.811 NaN 358630 35 0 45840 0.261 + 18422 MPTQEVQEL 9 70 545.7578736481453 1089.5011943630905 2 545.7576904296875 MULTI HCD FTMS 0 0 0 8615 136089.078125 0.945545151548082 -1 0.026386260986328125 2 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 40.23920728925047 0.06424668180817725 2 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L} 9 4 + 47.968 0 0 4.4027 4.4027 81.714 0 0 0 0.9151498112134959 33.62273132779855 0.9151498112134959 0.5115252244738144 0 1.1307196863200843 0 0 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}EV{[QC]|[C(Carbamidomethyl (C))A]}QE{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}EV{[QC]|[C(Carbamidomethyl (C))A]}[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}EV[DP]{M(Oxidation (M))|F}E{I|L} 4.4027;4.3558;3.9648;3.8997;3.5576;3.5576;3.5106;3.1196;3.0545;2.9087 -;-;-;-;-;-;-;-;-;- 402 NaN NaN 140858.8 NaN 6107 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8618 44.815 NaN 168250 35 0 24331 0.261 + 19346 NPDEFYYKM 9 54 611.7579393102635 1221.501325687327 2 611.7575073242188 MULTI HCD FTMS 0 0 0 8615 68923.890625 0.7358514140745526 2 -0.059391021728515625 3 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 53.31671820480216 0.026930930319421505 2 NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 0 + 68.326 0 0 5.5936 5.5936 92.895 0 0 0 61.247293946369794 4.232712163289278 4.232712163289278 68.32563782453214 0 1.9731975075880328 0 0 0 + + NPDE{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 5.5936 + + 71 + NaN NaN 106720 NaN 6108 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8619 44.818 NaN 113730 35 0 9254.1 0.261 + 12485 KQYADVEGF 9 45 528.7534215722214 NaN 0 528.7536010742188 PEAK HCD FTMS 0 0 0 8615 10154.23828125 0.013812230581576105 19 -0.4941978454589844 4 Unmodified _KQYADVEGF_ ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK 13.042465956692817 0.23204487237355156 2 GE 2 8 16.454 0 0 1.5589 0 0 165.07622683409278 701.3269137018186 866.4031405359115 0 0 0 0 0 1 0 0 0 GE 1.5589 - 13 + NaN NaN 112662.6 NaN 6109 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8620 44.821 NaN 105170 35 0 29633 0.261 + 173 AENNNNMAMLI 11 35 617.7794227409843 NaN 0 617.7670288085938 PEAK HCD FTMS 0 0 0 8615 9111.4111328125 1 0 0 5 Unmodified _AENNNNMAMLI_ ENSG00000126860|ENST00000462804|EVI2A;nc|ENSG00000126860|P22794-2|EVI2A 2.498486711656943 0.3350326561941647 2 {I|L}{M(Oxidation (M))|F} 2 10 10.969 0 0 0.88923 0 0 131.12051333467326 839.2792452447874 970.3997585794607 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.88923 - 3 + NaN NaN 108951.5 NaN 6110 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8621 44.825 NaN 102400 35 0 10292 0.262 + 30575 VNQMLERTS 9 43 539.2716685636605 1076.5287841941208 2 539.287841796875 MULTI HCD FTMS 0 0 0 8615 4255.60791015625 0.11483360791729384 15 -0.3988533020019531 6 Unmodified _VNQMLERTS_ ENSG00000132746|ENST00000673966|ALDH3B2 4.3292370932331545 0.3181982124262546 2 {I|L} 1 8 6.9897 0 0 0.64928 0 0 213.08084308036752 747.3436373346311 960.4244804149987 0 0 0 0 0 0 0 0 0 + {I|L} 0.64928 + + 24 + NaN NaN 104102.2 NaN 6111 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8622 44.828 NaN 64986 35 0 6152.8 0.262 -1 RYQQWMERF 9 43 453.880101238919 NaN 0 453.8799743652344 PEAK HCD FTMS 0 0 0 8615 20927.146484375 0.8993055806185684 -18 0.48307037353515625 7 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 4.189502756095605 0.27494509657688126 2 R 1 -1 2.4743 0 0 0.27317 0 0 584.5661279155349 162.0559481256469 746.6220760411818 0 0 0 0 0 0 0 0 0 R 0.27317 + + 1 + NaN NaN 87884.7 NaN 6112 2508 8615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8624 44.833 NaN 799560 35 0 73496 0.327 + 24491 RYLEGTSCI 9 82 521.2552442733023 1040.4959356134045 2 521.2551879882812 MULTI HCD FTMS 0 0 0 8623 438419.46875 0.6526277090978648 4 -0.10206222534179688 1 Unmodified _RYLEGTSCI_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 83.42873516780209 0.004742894019233849 2 [YR]{I|L}EGTSC{I|L} 9 0 + 79.249 0 0 7.6165 7.6165 86.896 0 0 0 0.23387189888815385 13.24462415139152 0.23387189888815385 0.23387189888815385 0 2.392159058960253 0 0.8494850021680094 0 + + [YR]{I|L}EGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGTSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGEVVC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}STGE{I|L}{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEGC{[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]TSC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEC(Carbamidomethyl (C)){[MG]|[TS]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ST[VP]C{[MG]|[TS]}{I|L};[YR]{I|L}EGC{[MG]|[TS]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[HG]|PP}GEVVC{I|L} 7.6165;7.594;7.3444;7.2518;5.6227;5.347;4.9716;4.2221;4.0246;3.956 +;-;-;-;-;-;-;-;-;- + 712 NaN NaN 205693.5 NaN 6113 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8625 44.838 NaN 387230 35 0 33690 0.262 + 12330 KMPKFKMPSF 10 70 419.555750436048 1255.6454219083441 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8623 177845.390625 0.42131882458240516 -8 0.203460693359375 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 50.13029200064056 0.07731568956748922 2 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 58.439 0 0 4.6541 4.6541 83.896 0 0 0 56.22019375639362 16.53212513775344 16.53212513775344 5.013487579716767 0 1.4489700043360187 0 0.7396518287104438 0 + + K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 4.6541;4.2548 +;- + 138 + NaN NaN 151063.9 NaN 6114 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8626 44.841 NaN 103410 35 0 9589.5 0.261 + 19405 NPFTKEAAL 9 46 495.76621380217506 989.5178746711501 2 495.766357421875 MULTI HCD FTMS 0 0 0 8623 84929.59375 0.8135443497033714 3 -0.082366943359375 3 Unmodified _NPFTKEAAL_ ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2 34.93206674587334 0.08860942999206235 2 NP{M(Oxidation (M))|F}T 4 5 35.745 0 0 3.6124 0 0 0 527.2833956354124 527.2833956354124 12.034021960761265 0 0 0 0 0.3807196863200844 0 0 0 + NP{M(Oxidation (M))|F}T 3.6124 + + 31 + NaN NaN 114832.2 NaN 6115 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8627 44.845 NaN 106680 35 0 38724 0.261 + 7215 FSQRAEVL 8 25 475.258555670811 948.502558408422 2 475.25860595703125 MULTI HCD FTMS 0 0 0 8623 60700.25 0.530236224943275 5 -0.1251068115234375 4 Unmodified _FSQRAEVL_ ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant 10.823927491677226 0.514154816617796 2 V{I|L} 2 6 25.969 0 0 2.7379 0 0 718.3420210626408 0 718.3420210626408 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.7379 + + 6 NaN NaN 112703.7 NaN 6116 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8628 44.848 NaN 226950 35 0 58574 0.261 + 10750 IRVWFQNKR 9 46 416.2436918347977 1245.7092461045931 3 416.2434997558594 MULTI HCD FTMS 0 0 0 8623 55855.546875 0.04060134681682706 48 -1.2323226928710938 5 Unmodified _IRVWFQNKR_ ENSG00000016082|ENST00000230658|ISL1;ENSG00000159556|ENST00000290759|ISL2 4.897010918128616 0.31389406404703984 2 R 1 8 13.979 0 0 1.1222 0 0 1071.5972446170915 0 1071.5972446170915 0 9.3753063169585 0 0 0 0 0 0 0 + R 1.1222 + + 8 + NaN NaN 107569.6 NaN 6117 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8629 44.851 NaN 104880 35 0 8181.3 0.261 + 18412 MPSTRDYEI 9 47 556.2579803760873 1110.5014078189745 2 556.2583618164062 MULTI HCD FTMS 0 0 0 8623 49216.2265625 0.8614687852318629 1 -0.033023834228515625 6 Unmodified _MPSTRDYEI_ ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 14.405379775768559 0.2358970535022398 2 MP 2 7 22.519 0 0 2.0278 0 0 0 879.3858741750503 879.3858741750503 3.0546218740408904 0 0 0 0 0.3054621874040891 0 0 0 + MP 2.0278 + + 70 + NaN NaN 98800.5 NaN 6118 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8630 44.854 NaN 171080 35 0 16681 0.261 + 34644 YPSEQEKALL 10 59 589.308701036334 1176.602849139468 2 589.308349609375 MULTI HCD FTMS 0 0 0 8623 61494.52734375 0.26213379177970914 -6 0.15123367309570312 7 Unmodified _YPSEQEKALL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 40.72490554402381 0.1391161235525472 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]YKA{I|L} 8 5 51.234 0 0 4.3544 0 0 0 128.07422573165232 128.07422573165232 36.96444654504422 0 0 0 0 0.9247425010840047 1.5228787452803376 0.6747425010840047 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]YKA{I|L} 4.3544 - 106 NaN NaN 105189.1 NaN 6119 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8631 44.858 NaN 209350 35 0 20727 0.261 + 24968 RYTIVQQQI 9 61 574.8249180371128 1147.6352831410254 2 574.8236694335938 MULTI HCD FTMS 0 0 0 8623 33978.234375 0.22846093405194742 -3 0.0790252685546875 8 Unmodified _RYTIVQQQI_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 47.594388314883695 0.03493607795751234 2 {[QN]|[E{I|L}]|[KN]}[YK]VQQQ{I|L} 9 4 + 56.132 0 0 4.8911 4.8911 86.745 0 0 0 1.1831747353331679 41.70696227168975 1.1831747353331679 9.208187539523749 0 1.6989700043360187 0 0.4247425010840047 0 {[QN]|[E{I|L}]|[KN]}[YK]VQQQ{I|L};{[QN]|[E{I|L}]|[KN]}[YK]V[AG]QQ{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQ[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQQ[AG]{I|L};[Q{I|L}]{[{M(Oxidation (M))|F}C]|[YS]}[R{I|L}]QQ{I|L} 4.8911;4.0887;4.0887;4.0887;2.1274 -;-;-;-;- 325 NaN NaN 112552.1 NaN 6120 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8632 44.861 NaN 117650 35 0 15105 0.263 + 23254 RGNPALVF 8 47 437.2509645637941 NaN 0 437.25128173828125 PEAK HCD FTMS 0 0 0 8623 13989.849609375 0.9045628386955171 6 -0.15813064575195312 9 Unmodified _RGNPALVF_ REV__ENSG00000138829|ENST00000262464|FBN2;REV__ENST00000511489.1_1_5:127701040-127712520:-|nuORF;REV__nc|ENSG00000138829|P35556-2|FBN2 5.760428011301431 0.38822285293237185 2 V 1 -1 5.4846 0 0 0.62861 0 0 608.3402031980977 162.05600916080314 770.3962123589008 0 0 0 0 0 0 0 0 0 V 0.62861 + + 1 + NaN NaN 92155.7 NaN 6121 2509 8623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8634 44.866 NaN 297780 35 0 54288 0.327 + 9485 HPWEVMPEL 9 48 569.2735448636703 1136.5325367941405 2 569.2734375 MULTI HCD FTMS 0 0 0 8633 94898.703125 0.2757375430857149 19 -0.4808845520019531 1 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 7.289230182591677 0.29575926068275815 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3296804877305 752.3296804877305 16.505149978319906 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 36 + NaN NaN 129565 NaN 6122 2510 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8635 44.871 NaN 232900 35 0 13686 0.263 + 26398 SSTFFFGHWF 10 58 421.5265307528321 1261.5577628586964 3 421.5265808105469 MULTI HCD FTMS 0 0 0 8633 56258.8125 0.5268288357611582 -1 0.033023834228515625 2 Unmodified _SSTFFFGHWF_ REV__ENST00000508941.5_1_5:35856265-35860978:+|nuORF 1.6526216038709556 0.46655611578153744 2 PHEE{M(Oxidation (M))|F}{I|L}[R{I|L}] 8 -1 31.375 0 0 2.487 0 0 222.01385223772928 0 222.01385223772928 0 15.890625187447966 0 0 0 1.1989700043360187 0 0 0 PHEE{M(Oxidation (M))|F}{I|L}[R{I|L}] 2.487 - 31 + NaN NaN 117064.7 NaN 6123 2510 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8636 44.874 NaN 193330 35 0 29978 0.261 + 3051 EAFVERDSL 9 52 533.2640639865981 1064.513575039996 2 533.2642211914062 MULTI HCD FTMS 0 0 0 8633 87683.84375 0.7371646783824077 -2 0.059391021728515625 3 Unmodified _EAFVERDSL_ ENSG00000137975|ENST00000370565|CLCA2 55.50274090549119 0.023872834264864425 2 {[CP]|[EA]}{M(Oxidation (M))|F}VE[RD]S{I|L} 9 0 + 38.407 0 0 3.6079 3.6079 87.145 0 0 0 20.96710189027612 0.8163370842417805 0.8163370842417805 13.991662398603147 0 1.2786596949921218 0 0.4247425010840047 0 + + {[CP]|[EA]}{M(Oxidation (M))|F}VE[RD]S{I|L};{[CP]|[EA]}{M(Oxidation (M))|F}V[TA][KG]{[QD]|[EN]|[WG]|[KD]|[RS]};[HV]DRQQ[WP] 3.6079;2.2935;0.17701 +;-;- + 340 + NaN NaN 119838.2 NaN 6124 2510 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8637 44.878 NaN 114190 35 0 10617 0.261 + 34596 YPNPKPEVL 9 45 528.7896426797744 1055.5647324263487 2 528.789794921875 MULTI HCD FTMS 0 0 0 8633 14360.03125 0.32823514705619744 7 -0.18125534057617188 4 Unmodified _YPNPKPEVL_ ENSG00000143228|ENST00000271452|NUF2;ENST00000487578.2_1_1:163295841-163298095:+|nuORF;ENST00000490881.5_1_1:163291794-163297702:+|nuORF 8.745405648335112 0.2847203663274469 2 NE{I|L} 3 6 31.242 0 0 2.9598 0 0 681.4047718732437 0 681.4047718732437 0 16.549471895720984 0 0 0 0.805462187404089 0 0 0 NE{I|L} 2.9598 - 52 NaN NaN 99295 NaN 6125 2510 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8638 44.881 NaN 290640 35 0 30336 0.261 + 24969 RYTIVQQQI 9 62 574.8249180371128 1147.6352831410254 2 574.8255004882812 MULTI HCD FTMS 0 0 0 8633 79012.59375 0.5312604172061858 -2 0.059391021728515625 5 Unmodified _RYTIVQQQI_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 57.24910588100465 0.021429789259086996 2 [YR]T{I|L}VQQQ{I|L} 9 0 + 76.08 0 0 6.6293 6.6293 89.633 0 0 0 4.762036441594191 57.49668131245279 4.762036441594191 9.208187539523749 0 1.774227503252014 0 0.4247425010840047 0.4247425010840047 + + [YR]T{I|L}VQQQ{I|L};[YR]T{I|L}V[AG]QQ{I|L};[YR]T{I|L}VQ[AG]Q{I|L};[YR]T{I|L}VQQ[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQQQ{I|L};[YR]T{I|L}V[AG][AG]Q{I|L};[YR]T{I|L}V[AG]Q[AG]{I|L};[YR]T{I|L}VQ[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}[YK]V[AG]QQ{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQ[AG]Q{I|L} 6.6293;5.8269;5.8269;5.8269;5.3268;5.0284;5.0284;5.0284;4.5244;4.5244 +;-;-;-;-;-;-;-;-;- + 341 NaN NaN 148672.7 NaN 6126 2510 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8639 44.884 NaN 162490 35 0 13434 0.261 + -1 RMICWRKIRNL 11 52 515.9591424522563 NaN 0 515.9594116210938 PEAK HCD FTMS 0 0 0 8633 5184.724609375 0.25921428332191015 1 -0.02304840087890625 6 Carbamidomethyl (C) _RMIC(Carbamidomethyl (C))WRKIRNL_ REV__ENSG00000164219|ENST00000419445|PGGT1B 0.09484139111097674 0.34185110575506755 2 {I|L} 1 -1 6.9897 0 0 0.67868 0 0 117.46906056693724 796.3274019830686 913.7964625500059 0 0 0 0 0 0 0 0 0 {I|L} 0.67868 + + 6 + NaN NaN 122433.6 NaN 6127 2510 8633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8641 44.889 NaN 215500 35 0 25782 0.327 + 28493 TPQEQVDSL 9 48 508.7481914509742 1015.4818299687485 2 508.74822998046875 MULTI HCD FTMS 0 0 0 8640 92716.4765625 0.8144899447350766 -2 0.056072235107421875 1 Unmodified _TPQEQVDSL_ ENSG00000131165|ENST00000397901|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;nc|ENSG00000131165|Q9HD42-2|CHMP1A 41.95555342248728 0.056367691549927025 2 QVDS{I|L} 5 4 51.766 0 0 5.0977 0 0 455.20121962715 0 455.20121962715 0 33.57840941039747 0 0 0 1.305462187404089 0 0.4247425010840047 0 + QVDS{I|L} 5.0977 + + 44 NaN NaN 124254.7 NaN 6128 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8642 44.894 NaN 258760 35 0 17252 0.261 + 2442 DPTVHDDVL 9 68 505.74306054421567 1009.4715681552314 2 505.74310302734375 MULTI HCD FTMS 0 0 0 8640 51876.3359375 0.9960282894749671 3 -0.06903457641601562 2 Unmodified _DPTVHDDVL_ chr8:47858980-47859611|272|13.27|0.78|4.09|-|0|None,PRKDC|1;ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 7.289230182591677 0.29575926068275815 2 NVT{M(Oxidation (M))|F} 4 8 25.918 0 0 2.5674 0 0 530.2694330007376 0 530.2694330007376 0 4.062959475437751 0 0 0 0 0 0 0 NVT{M(Oxidation (M))|F} 2.5674 - 248 + NaN NaN 131266.7 NaN 6129 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8643 44.897 NaN 183650 35 0 34963 0.261 + 3525 EIHVSSCSTI 10 44 538.2578466163507 1074.5011402995012 2 538.2579345703125 MULTI HCD FTMS 0 0 0 8640 13132.623046875 0.32599644889524687 4 -0.10205841064453125 3 Unmodified _EIHVSSCSTI_ ENSG00000145975|ENST00000274673|FAM217A 5.731851221503515 0.44496410492002586 2 T{I|L} 2 8 19.693 0 0 1.8327 0 0 842.3588734357437 0 842.3588734357437 0 19.20818753952375 0 0 0 0.3494850021680094 0 0 0 + T{I|L} 1.8327 + + 5 NaN NaN 109885.8 NaN 6130 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8644 44.901 NaN 145740 35 0 11637 0.261 + 16176 LPVEHVNQL 9 56 524.7928581852432 1047.5711634372863 2 524.7926025390625 MULTI HCD FTMS 0 0 0 8640 64959.28125 0.48176154356741846 -2 0.056072235107421875 4 Unmodified _LPVEHVNQL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 43.77239144664712 0.04802738721622131 2 VNQ{I|L} 4 5 37.251 0 0 3.5559 0 0 575.307909080275 0 575.307909080275 0 28.2711470149615 0 0 0 0.8494850021680094 0 0 0.3807196863200844 + VNQ{I|L} 3.5559 + + 92 NaN NaN 108709.5 NaN 6131 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8645 44.904 NaN 197830 35 0 46154 0.262 -1 SLMRRRGTAVF 11 45 437.2436527063245 1308.7091287191736 3 437.5700378417969 MULTI HCD FTMS 0 0 0 8640 5588.03857421875 0.5537116568216592 1 -0.026294708251953125 5 Oxidation (M) _SLM(Oxidation (M))RRRGTAVF_ ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4 1.4551175022131473 0.41253901545122046 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9843 0 0 1044.5628102150704 0 1044.5628102150704 0 20.48455006504028 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.9843 + + 7 + NaN NaN 123602.8 NaN 6132 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8646 44.907 NaN 36418 35 0 7517.3 0.261 -1 ECRMRYFLM 9 27 632.7860107421875 NaN 0 632.7860107421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _ECRMRYFLM(Oxidation (M))_ ENSG00000221947|ENST00000408926|XKR9 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90720.9 NaN 6133 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8647 44.91 NaN 31394 35 0 2690.7 0.261 -1 0 32 640.4943237304688 NaN 0 640.4943237304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94615.4 NaN 6134 2511 8640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8649 44.916 NaN 712940 35 0 98105 0.327 + 13932 KYQPRIAVF 9 76 561.3268619833847 1120.6391710335693 2 561.3268432617188 MULTI HCD FTMS 0 0 0 8648 444687.3125 0.776045160939182 1 -0.019695281982421875 1 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 107.99703571036002 0.003269392969029945 2 {[HG]|PP}PQPR{I|L}AV{M(Oxidation (M))|F} 10 3 + 57.049 0 0 5.0908 5.0908 83.632 0 0 0 2.724928274552596 11.571903099773309 2.724928274552596 2.724928274552596 0 2.0924778212679485 0 0 1.2302046884880937 {[HG]|PP}PQPR{I|L}AV{M(Oxidation (M))|F};[YK]QPR{I|L}AV{M(Oxidation (M))|F};[YK][AG]PR{I|L}AV{M(Oxidation (M))|F};{[HG]|PP}P[AG]PR{I|L}AV{M(Oxidation (M))|F};{[HG]|PP}P[NP]{I|L}{I|L}KV{M(Oxidation (M))|F};[YQ]KPR{I|L}AV{M(Oxidation (M))|F};{[HG]|PP}P[NP]{I|L}{I|L}VK{M(Oxidation (M))|F} 5.0908;4.8476;4.0259;3.894;3.54;3.438;2.4627 -;+;-;-;-;-;- + 407 NaN NaN 197885.8 NaN 6135 2512 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8650 44.92 NaN 241990 35 0 20439 0.261 + 29654 VAPIRKWS 8 51 478.7875022523348 955.5604515714696 2 478.7872619628906 MULTI HCD FTMS 0 0 0 8648 111506.1875 0.6856181134558155 1 -0.019695281982421875 2 Unmodified _VAPIRKWS_ REV__ENSG00000100330|ENST00000401950|MTMR3;REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant;REV__nc|ENSG00000100330|Q13615-2|MTMR3;REV__nc|ENSG00000100330|Q13615-3|MTMR3 15.847184025352803 0.47719562709667024 2 [RP]{I|L}AVK{[WS]|[C(Carbamidomethyl (C)){I|L}]} 8 -1 + 40.498 0 0 4.2382 4.2382 87.313 0 0 0 26.518929852098466 10.743923658886189 10.743923658886189 11.989700043360191 0 1.4247425010840047 0 0.6139829889124311 0.4247425010840047 [RP]{I|L}AVK{[WS]|[C(Carbamidomethyl (C)){I|L}]};A{I|L}[RP]VK{[WS]|[C(Carbamidomethyl (C)){I|L}]};[RP][PA]PK[YK] 4.2382;2.9834;1.2723 -;-;- 103 + NaN NaN 127019.4 NaN 6136 2512 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8651 44.924 NaN 170310 35 0 12650 0.261 + 1585 AYVHMVTHF 9 54 552.7682830401682 1103.5220131471362 2 552.7682495117188 MULTI HCD FTMS 0 0 0 8648 69090.671875 0.04029798103041589 18 -0.4644813537597656 3 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F} 9 0 + 87.898 0 0 7.9652 7.9652 90.73 0 0 0 8.066884185923655 16.478174818886373 8.066884185923655 8.066884185923655 0 2.742992819099939 2 0.7614393726401688 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};[YV]AHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVH{[WN]|[YH]}V{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}QQVMHAP{M(Oxidation (M))|F} 7.9652;7.2342;5.3391;3.703;3.1146 +;-;-;-;- + 256 NaN NaN 105194.6 NaN 6137 2512 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8652 44.927 NaN 191060 35 0 23430 0.261 + 23570 RPDSLDPAL 9 50 492.26129272953466 982.5080325258693 2 492.2615966796875 MULTI HCD FTMS 0 0 0 8648 54612.34375 0.7539989433802383 -1 0.026294708251953125 4 Unmodified _RPDSLDPAL_ ENSG00000143748|ENST00000281701|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-5|NVL 11.494710602746466 0.2610445893512368 2 DPA{I|L} 4 5 36.23 0 0 3.6875 0 0 568.299120017775 0 568.299120017775 0 22.735097166722156 0 0 0 0.8807196863200843 0 0 0 + DPA{I|L} 3.6875 + + 26 NaN NaN 120356 NaN 6138 2512 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8653 44.93 NaN 368180 35 0 64187 0.261 + -1 KYQFCFNI 8 87 560.2667948031738 1118.5190366731474 2 560.7659912109375 MULTI HCD FTMS 0 0 0 8648 15625.3662109375 0.6443790441891905 11 -0.2901191711425781 5 Carbamidomethyl (C) _KYQFC(Carbamidomethyl (C))FNI_ REV__ENST00000542958.5_1_12:64816967-64819028:+|nuORF 9.347437153973935 0.5250182646323369 2 YQP 3 -1 15.93 0 0 1.4242 0 0 125.97516567880992 601.3415011041624 727.3166667829723 0 0 0 0 0 0 0 0 0.4247425010840047 YQP 1.4242 - 239 + NaN NaN 135998.2 NaN 6139 2512 8648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8655 44.935 NaN 302500 35 0 58640 0.327 + 4003 ERNLAEQSSM 10 49 582.7695862056189 1163.5246194780377 2 582.77001953125 MULTI HCD FTMS 0 0 0 8654 165618.328125 0.7426025920536781 -4 0.10206222534179688 1 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 12.240655878213236 0.39661705172222156 2 [YR]{M(Oxidation (M))|F}STSVS 8 -1 55.8 0 0 4.7957 0 0 0 233.05641869133981 233.05641869133981 23.276435560268055 0 0 0 0 1.9436726795685342 0 0 0.4247425010840047 [YR]{M(Oxidation (M))|F}STSVS 4.7957 - 234 NaN NaN 131418.6 NaN 6140 2513 8654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8656 44.94 NaN 305210 35 0 24464 0.261 + 25193 SANLEEVTM 9 63 505.2289868809931 1008.4434208287862 2 505.22894287109375 MULTI HCD FTMS 0 0 0 8654 88864.5703125 0.24401852750486228 -9 0.223663330078125 2 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 70.33199760932243 0.0089807860198535 2 EEVT{M(Oxidation (M))|F} 5 4 58.488 0 0 5.7998 0 0 385.1948719709 0 385.1948719709 0 51.49797211252192 0 0 0 1.9247425010840047 0 0.7302046884880937 0 + EEVT{M(Oxidation (M))|F} 5.7998 + + 197 NaN NaN 123762 NaN 6141 2513 8654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8657 44.943 NaN 131080 35 0 20724 0.261 -1 NPDEFYYKM 9 45 611.7579393102635 1221.501325687327 2 611.7576293945312 MULTI HCD FTMS 0 0 0 8654 42698.69140625 0.4558635933855048 7 -0.20133590698242188 3 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 33.4449034751529 0.0954363425218424 2 NPDE{M(Oxidation (M))|F}YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 -1 + 53.906 0 0 4.4131 4.4131 90.362 0 0 0 53.90600959017256 2.632192780232785 2.632192780232785 40.059034764951846 0 0.8494850021680094 0 0.3807196863200844 0 NPDE{M(Oxidation (M))|F}YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};N{[ET]|[MV]}EEYY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4.4131;1.1336 +;- + 39 + NaN NaN 99134.4 NaN 6142 2513 8654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8658 44.947 NaN 69935 35 0 10678 0.263 -1 FSFCHYYYFL 10 38 482.8773526136436 1445.6102284411309 3 482.877197265625 MULTI HCD FTMS 0 0 0 8654 9301.6357421875 0.4595162997997978 1 -0.023044586181640625 4 Carbamidomethyl (C) _FSFC(Carbamidomethyl (C))HYYYFL_ ENSG00000175893|ENST00000380916|ZDHHC21 0.6268255596534771 0.47198581731947004 2 R 1 -1 13.099 0 0 0.90612 0 0 1271.4985321294105 0 1271.4985321294105 0 8.494850021680094 0 0 0 0 0 0 0 R 0.90612 - 6 + NaN NaN 87259 NaN 6143 2513 8654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8659 44.95 NaN 52473 35 0 6564.1 0.261 + 24028 RWLPQQNAAHF 11 36 456.5702727611686 1366.6889888837059 3 456.5709533691406 MULTI HCD FTMS 0 0 0 8654 19723.388671875 0.8948369083389801 2 -0.05606842041015625 5 Unmodified _RWLPQQNAAHF_ ENSG00000175470|ENST00000455566|PPP2R2D 10.898955630103616 0.3621194540206772 2 {M(Oxidation (M))|F} 1 10 16.99 0 0 1.2431 0 0 1201.6100226745245 0 1201.6100226745245 0 5.752574989159953 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2431 + + 9 + NaN NaN 92702.6 NaN 6144 2513 8654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8660 44.953 NaN 38316 35 0 4125.9 0.261 + 7094 FRKDDYTYS 9 34 597.7745971679688 NaN 0 597.7745971679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FRKDDYTYS_ tr|U7T2S0|U7T2S0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00438PE=4SV=1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83644.1 NaN 6145 2513 8654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8662 44.958 NaN 382490 35 0 34739 0.326 + 34645 YPSEQEKALL 10 84 589.308701036334 1176.602849139468 2 589.3087158203125 MULTI HCD FTMS 0 0 0 8661 221754.84375 0.9452782312280416 -1 0.023044586181640625 1 Unmodified _YPSEQEKALL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 89.60864043982822 0.0010324512941143173 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L}{I|L} 10 0 + 93.548 0 0 7.9507 7.9507 91.164 0 0 0 17.304263470693286 15.026975159433533 15.026975159433533 9.164539485499247 0 2.3737125054200234 1.5228787452803376 0.6203715150305281 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE[AG]EKA{I|L}{I|L};YPSEQEKA{I|L}{I|L};YPSE[AG]EKA{I|L}{I|L} 7.9507;7.1718;6.48;5.7011 +;-;+;- + 619 NaN NaN 143509 NaN 6146 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8663 44.963 NaN 240220 35 0 23246 0.261 -1 MPTQEVQEL 9 67 545.7578736481453 1089.5011943630905 2 545.7581176757812 MULTI HCD FTMS 0 0 0 8661 65667.8203125 0.45625916469345645 5 -0.15523910522460938 2 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 24.990960013464015 0.14443998892849796 2 VQE{I|L} 4 -1 40.79 0 0 3.7439 0 0 602.2372303693375 0 602.2372303693375 0 23.547575072713155 0 0 0 0.6861818737241735 0 0 0.3494850021680094 VQE{I|L} 3.7439 + + 233 NaN NaN 123462.8 NaN 6147 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8664 44.966 NaN 448710 35 0 134620 0.262 + 21966 QEMMLKKRVF 10 53 437.2436527063245 1308.7091287191736 3 437.2347412109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _QEMMLKKRVF_ REV__chr10:104073245-104076301|466|17.81|0.71|4.65|-|ENST00000650263|COL17A1,COL17A1;REV__ENSG00000065618|ENST00000648076|COL17A1;REV__ENST00000480127.1_1_10:105815115-105815723:-|nuORF;REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1 3.5870582119611467 0.4563168352879256 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9843 0 0 1044.5619211235207 0 1044.5619211235207 0 22.870156338638594 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.9843 + + 10 + NaN NaN 158529.4 NaN 6148 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8665 44.97 NaN 136730 35 0 21317 0.261 + 10745 IRLNPDPSI 9 55 512.7928028217709 1023.5710527103419 2 512.7930908203125 MULTI HCD FTMS 0 0 0 8661 58759.02734375 0.2004923329862221 9 -0.24737930297851562 4 Unmodified _IRLNPDPSI_ REV__ENSG00000148606|ENST00000372371|POLR3A 13.042465956692817 0.2476723265019929 2 {I|L}P[WR]RP 6 -1 19.87 0 0 1.9412 0 0 0 215.10341821842033 215.10341821842033 9.068043921522534 0 0 0 0 0.5 0 0 0 {I|L}P[WR]RP 1.9412 - 87 + NaN NaN 95973.1 NaN 6149 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8666 44.973 NaN 151040 35 0 45428 0.261 -1 MHCDGGISMIL 11 39 617.7667963563049 1233.5190397794097 2 617.7675170898438 MULTI HCD FTMS 0 0 0 8661 67693.390625 0.5861459441337336 -8 0.204132080078125 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 8.745405648335112 0.3805662881914433 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 40.745 0 0 3.3032 0 0 713.2604237287125 0 713.2604237287125 0 26.765997036641593 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.3032 - 20 NaN NaN 110812.2 NaN 6150 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8667 44.976 NaN 83512 35 0 21904 0.264 + 29829 VERFKPYCNF 10 29 434.8821235406956 NaN 0 434.8819580078125 PEAK HCD FTMS 0 0 0 8661 54587.2109375 0.7063957400083528 21 -0.5464935302734375 6 Unmodified _VERFKPYCNF_ ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113282.6 NaN 6151 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8668 44.98 NaN 55708 35 0 6003.5 0.261 -1 SLMTYSCMALS 11 35 619.7568125579143 1237.4990721826284 2 619.7572631835938 MULTI HCD FTMS 0 0 0 8661 24862.212890625 1 0 0 7 2 Oxidation (M) _SLM(Oxidation (M))TYSCM(Oxidation (M))ALS_ ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 101722.8 NaN 6152 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8669 44.983 NaN 43174 35 0 6323.5 0.261 + 3376 EERQRFQEE 9 28 625.7899475258109 NaN 0 625.7891845703125 PEAK HCD FTMS 0 0 0 8661 14536.2783203125 0.6567878265186782 1 -0.033023834228515625 8 Unmodified _EERQRFQEE_ ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98022.4 NaN 6153 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8670 44.986 NaN 46157 35 0 2623.6 0.261 -1 CMNCYCNGMT 10 32 606.6856089923335 NaN 0 606.7044067382812 PEAK HCD FTMS 0 0 0 8661 4541.408203125 0.9885614199106482 -2 0.0427398681640625 9 Carbamidomethyl (C),Oxidation (M) _CM(Oxidation (M))NCYC(Carbamidomethyl (C))NGMT_ ENSG00000109917|ENST00000227322|ZPR1 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92361 NaN 6154 2514 8661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8672 44.991 NaN 758840 35 0 72242 0.327 + 12331 KMPKFKMPSF 10 91 419.555750436048 1255.6454219083441 3 419.55572509765625 MULTI HCD FTMS 0 0 0 8671 348900.78125 0.8265520210309519 -2 0.05606842041015625 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 78.61045856554632 0.007382707188123376 2 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 81.469 0 0 6.4882 6.4882 94.612 0 0 0 58.05228025768591 16.53212513775344 16.53212513775344 81.4686553367334 0 1.9731975075880328 0 1.1382104921644451 0 + + K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 6.4882 + + 316 + NaN NaN 202274.3 NaN 6155 2515 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8673 44.996 NaN 439640 35 0 39979 0.261 + 24492 RYLEGTSCI 9 54 521.2552442733023 1040.4959356134045 2 521.2553100585938 MULTI HCD FTMS 0 0 0 8671 177657.859375 0.2644600662870013 10 -0.2536964416503906 2 Unmodified _RYLEGTSCI_ ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1;ENSG00000261150|ENST00000615648|EPPK1 59.368380827593164 0.01846506874148156 2 EGTSC{I|L} 6 3 69.245 0 0 6.655 0 0 432.2482995414115 0 432.2482995414115 0 58.44335023848103 0 0 0 1.9604093769761874 0 0.8494850021680094 0 + EGTSC{I|L} 6.655 + + 400 NaN NaN 145992.4 NaN 6156 2515 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8674 44.999 NaN 222770 35 0 46776 0.261 + 7342 FVDDTNVYR 9 46 564.7690312605342 1127.5235095878684 2 564.7697143554688 MULTI HCD FTMS 0 0 0 8671 85213.3515625 0.6760888940901141 -1 0.033023834228515625 3 Unmodified _FVDDTNVYR_ ENSG00000174231|ENST00000304992|PRPF8 10.073929032068715 0.27331982688540024 2 [{M(Oxidation (M))|F}V]DH 4 6 21.682 0 0 1.923 0 0 0 626.2864544943715 626.2864544943715 18.58349385648225 0 0 0 0 1 0 0 0 [{M(Oxidation (M))|F}V]DH 1.923 - 16 NaN NaN 111815.4 NaN 6157 2515 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8675 45.003 NaN 215340 35 0 51501 0.264 + 24836 RYPSLWRRL 9 50 416.2436918347977 1245.7092461045931 3 416.2431945800781 MULTI HCD FTMS 0 0 0 8671 73101.3125 0.053137278348020026 54 -1.4151992797851562 4 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 10.150570793230772 0.27265765907388223 2 {I|L}R 2 7 25.217 0 0 2.0243 0 0 0 973.4995181466647 973.4995181466647 11.237125054200234 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 2.0243 - 12 + NaN NaN 111757 NaN 6158 2515 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8676 45.006 NaN 241160 35 0 43628 0.261 + 13408 KYPENDLFRKL 11 45 474.92961683179243 1421.7670210955773 3 474.929443359375 MULTI HCD FTMS 0 0 0 8671 68920.1171875 0.4504851954492788 -3 0.07576370239257812 5 Unmodified _KYPENDLFRKL_ ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 17.571907917122694 0.3039778019619682 2 KY 2 9 24.776 0 0 1.7426 0 0 0 1127.584392764388 1127.584392764388 12.786596949921218 0 0 0 0 0.3807196863200844 0 0 0 + KY 1.7426 + + 12 + NaN NaN 143383.6 NaN 6159 2515 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8677 45.009 NaN 34421 35 0 4306 0.261 + 12366 KNWVTQLCHK 10 29 628.8302605184757 NaN 0 628.830078125 PEAK HCD FTMS 0 0 0 8671 14518.255859375 0.8445703015996663 -5 0.1251068115234375 6 Unmodified _KNWVTQLCHK_ REV__ENSG00000197746|ENST00000394936|PSAP;REV__nc|ENSG00000197746|P07602-2|PSAP;REV__nc|ENSG00000197746|P07602-3|PSAP 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87877.1 NaN 6160 2515 8671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8679 45.014 NaN 815060 35 0 86179 0.327 + 22864 QYNPKFQTL 9 89 569.7981434352345 1137.5817339372688 2 569.7977294921875 MULTI HCD FTMS 0 0 0 8678 271100.0625 0.599095886948577 -2 0.056102752685546875 1 Unmodified _QYNPKFQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 118.0683919894846 0.0016252157255221692 2 [YQ]NPK{M(Oxidation (M))|F}QT{I|L} 9 0 + 61.521 0 0 5.408 5.408 87.54 0 0 0 20.251218656855706 20.306781717527322 20.251218656855706 9.208187539523749 0 1.4802046884880937 1.0457574905606752 1.5431576817365436 0.6549471895720984 + + [YQ]NPK{M(Oxidation (M))|F}QT{I|L};[YQ]NPK{M(Oxidation (M))|F}[AG]T{I|L};[YQ]GGPK{M(Oxidation (M))|F}QT{I|L};[YQ]GGPK{M(Oxidation (M))|F}[AG]T{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}S[K{I|L}]{I|L}N[YQ];T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[SG]K{M(Oxidation (M))|F}QT{I|L};[YQ]VV[KP]N[YQ];{[WS]|[C(Carbamidomethyl (C)){I|L}]}S[K{I|L}]{I|L}GG[YQ];T[HK][YT]{M(Oxidation (M))|F}QT{I|L} 5.408;4.5986;4.5986;3.793;0.9387;0.75616;0.72577;0.12925;0.072117 +;-;-;-;-;-;-;-;- + 1079 + NaN NaN 210733 NaN 6161 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8680 45.019 NaN 196810 35 0 20992 0.261 + 24970 RYTIVQQQI 9 54 574.8249180371128 1147.6352831410254 2 574.8248901367188 MULTI HCD FTMS 0 0 0 8678 92185.59375 0.6198322909254571 4 -0.12218856811523438 2 Unmodified _RYTIVQQQI_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 47.594388314883695 0.03493607795751234 2 {[QN]|[E{I|L}]|[KN]}[YK]VQQQ{I|L} 9 4 + 60.423 0 0 5.265 5.265 87.344 0 0 0 2.420299789533402 40.97295930833134 2.420299789533402 9.208187539523749 0 1.7302046884880937 0 0 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}[YK]VQQQ{I|L};{[QN]|[E{I|L}]|[KN]}[YK]V[AG]QQ{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQ[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[YK]VQQ[AG]{I|L};QQ{I|L}[PS]V[HV]Q{I|L};[Q{I|L}]Q[PS]V[HV]Q{I|L} 5.265;4.4627;4.4627;4.4627;1.5678;0.91656 -;-;-;-;-;- 202 NaN NaN 116485.1 NaN 6162 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8681 45.022 NaN 83649 35 0 9293.4 0.261 + 3052 EAFVERDSL 9 42 533.2640639865981 1064.513575039996 2 533.2640380859375 MULTI HCD FTMS 0 0 0 8678 39056.4609375 0.32835060866896887 4 -0.12218856811523438 3 Unmodified _EAFVERDSL_ ENSG00000137975|ENST00000370565|CLCA2 8.155526934196011 0.2891920862272901 2 {[CP]|[EA]}{M(Oxidation (M))|F}VE 5 4 23.456 0 0 2.2034 0 0 0 486.23191248111567 486.23191248111567 17.971062485323515 0 0 0 0 0 0 0.4247425010840047 0 + {[CP]|[EA]}{M(Oxidation (M))|F}VE 2.2034 + + 17 + NaN NaN 105978.8 NaN 6163 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8682 45.026 NaN 126790 35 0 10669 0.262 + -1 MSVFCNRATAF 11 44 421.5265307528321 1261.5577628586964 3 421.5265197753906 MULTI HCD FTMS 0 0 0 8678 51093.375 0.47845772191438046 5 -0.15196609497070312 4 Oxidation (M) _M(Oxidation (M))SVFCNRATAF_ REV__ENST00000283195.10_1_2:109380551-109380614:+|nuORF 1.3296431237094175 0.4130893034510334 2 A{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4235 0 0 1025.4417788272494 0 1025.4417788272494 0 1.7609125905568135 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.4235 + + 16 + NaN NaN 102508.1 NaN 6164 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8683 45.029 NaN 210310 35 0 26304 0.261 + 1188 AYLHTTTTF 9 45 527.7638203677038 1053.5130878022076 2 527.7636108398438 MULTI HCD FTMS 0 0 0 8678 77422.2890625 0.5264221049780992 -2 0.056102752685546875 5 Unmodified _AYLHTTTTF_ ENSG00000108846|ENST00000285238|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3 57.47134341890925 0.0211188941628804 2 TT{M(Oxidation (M))|F} 3 6 44.693 0 0 4.2423 0 0 686.3397210337713 0 686.3397210337713 0 15.774465702508706 0 0 0 1 0 0.8494850021680094 0 + TT{M(Oxidation (M))|F} 4.2423 + + 43 NaN NaN 117516.4 NaN 6165 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8684 45.032 NaN 113690 35 0 17794 0.261 -1 RYLSPKYIKMF 11 42 487.93560805191515 1460.7849947559455 3 487.9357604980469 MULTI HCD FTMS 0 0 0 8678 38018.50390625 0.09296844409278993 55 -1.4240798950195312 6 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 10.52747425323666 0.3653561834368464 2 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 14.142 0 0 0.96811 0 0 744.427647199108 0 744.427647199108 0 8.657424843733645 0 0 0 0.9247425010840047 0 0 0 Y{I|L}K{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.96811 + + 15 + NaN NaN 107328.8 NaN 6166 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8685 45.036 NaN 178630 35 0 21477 0.261 + 15960 LPPVWESVT 9 53 514.2758188772219 1026.5370848212438 2 514.2771606445312 MULTI HCD FTMS 0 0 0 8678 50064.47265625 0.5432139417383619 -3 0.0791473388671875 7 Unmodified _LPPVWESVT_ ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;nc|ENSG00000173805|P54257|HAP1 11.640296217721598 0.25978676193971967 2 {I|L}P 2 7 40.445 0 0 3.94 0 0 0 813.3819216527161 813.3819216527161 26.744018128452822 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 + {I|L}P 3.94 + + 36 + NaN NaN 104958.7 NaN 6167 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8686 45.039 NaN 188020 35 0 35329 0.262 + 28423 TPGPQPTL 8 55 405.7214851313043 809.4284173294086 2 406.2326354980469 MULTI HCD FTMS 0 0 0 8678 14142.0009765625 1 0 0 8 Unmodified _TPGPQPTL_ ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2 11.640296217721598 0.50814828952472 2 {I|L} 1 7 18.099 0 0 2.236 0 0 678.3339024141727 0 678.3339024141727 0 4.119543704721593 0 0 0 0.5 0 0 0 + {I|L} 2.236 + + 27 + NaN NaN 110862.4 NaN 6168 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8687 45.042 NaN 31059 35 0 4627 0.261 -1 RHCQLWCLV 9 22 607.7994995117188 NaN 0 607.7994995117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _RHC(Carbamidomethyl (C))QLWCLV_ ENST00000470364.5_1_1:38335671-38338691:-|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93962.8 NaN 6169 2516 8678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8689 45.047 NaN 156090 35 0 9992.8 0.327 + 16177 LPVEHVNQL 9 64 524.7928581852432 1047.5711634372863 2 524.7929077148438 MULTI HCD FTMS 0 0 0 8688 80321.6953125 0.595694767107693 4 -0.118896484375 1 Unmodified _LPVEHVNQL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 21.536976647645854 0.1742816388551942 2 {I|L}PYS 4 7 31.336 0 0 2.9913 0 0 0 584.3096407525999 584.3096407525999 15.762495684687732 0 0 0 0 0.3807196863200844 0 0.6382104921644451 0 {I|L}PYS 2.9913 - 55 + NaN NaN 108045.8 NaN 6170 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8690 45.052 NaN 156920 35 0 11590 0.261 + 4862 FADSVYLDS 9 53 508.7307462371951 NaN 0 508.7478332519531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FADSVYLDS_ REV__CON__P41361 10.823927491677226 0.2427956001690155 2 SDV 3 -1 16.198 0 0 1.5951 0 0 131.0604656372937 580.2368914446707 711.2973570819645 0 0 0 0 0 0 0 0 0 SDV 1.5951 - 64 + NaN NaN 103162.7 NaN 6171 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8691 45.055 NaN 118230 35 0 12155 0.262 + -1 GWFSSMWKAF 10 44 421.5265307528321 1261.5577628586964 3 421.52642822265625 MULTI HCD FTMS 0 0 0 8688 26438.880859375 0.24758369761132984 6 -0.15820693969726562 3 Oxidation (M) _GWFSSM(Oxidation (M))WKAF_ REV__ENSG00000206535|ENST00000383693|LNP1 1.9063754702782614 0.46521295622613185 2 A{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4235 0 0 1025.4418551211947 0 1025.4418551211947 0 7.7815125038364386 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.4235 + + 18 + NaN NaN 97244.2 NaN 6172 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8692 45.059 NaN 91939 35 0 11706 0.261 -1 0 39 489.2530191621248 488.2457426955248 1 489.2430114746094 MULTI HCD FTMS 0 0 0 8688 4718.47509765625 1 0 0 4 NaN NaN 2 S{M(Oxidation (M))|F} 2 -1 13.979 0 0 2.8632 0 0 236.134900875992 0 236.134900875992 0 11.215190243431472 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 2.8632 - 4 + NaN NaN 94533.4 NaN 6173 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8693 45.062 NaN 185700 35 0 16212 0.261 + 21793 QAILQEREL 9 57 550.3088433743131 1098.6031338154262 2 550.30908203125 MULTI HCD FTMS 0 0 0 8688 66622.1640625 0.47281162012848293 -2 0.056148529052734375 5 Unmodified _QAILQEREL_ DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant;ENSG00000135829|ENST00000367549|DHX9;ENST00000477802.1_1_1:182828020-182829385:+|nuORF 45.739877483867886 0.03899552410870734 2 [QA]{I|L}{I|L}QE 6 3 41.713 0 0 3.7969 0 0 0 413.2153719537719 413.2153719537719 22.985002360903835 0 0 0 0 1.0994850021680094 0 0.3807196863200844 0 + [QA]{I|L}{I|L}QE 3.7969 + + 161 + NaN NaN 122189.1 NaN 6174 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8694 45.065 NaN 112290 35 0 10520 0.261 + -1 VCVCHLWASF 10 45 639.7912525965035 1277.5679522598068 2 639.791015625 MULTI HCD FTMS 0 0 0 8688 45377.58203125 0.9386477196020606 -1 0.033069610595703125 6 2 Carbamidomethyl (C) _VC(Carbamidomethyl (C))VC(Carbamidomethyl (C))HLWASF_ REV__ENSG00000174839|ENST00000311128|DENND6A 6.2057823575117 0.44245551207394906 2 NDYTNS{M(Oxidation (M))|F} 7 -1 49.729 0 0 3.8925 0 0 418.23237807441564 0 418.23237807441564 0 38.76032923022301 0 0 0 1.305462187404089 0 0 0 NDYTNS{M(Oxidation (M))|F} 3.8925 - 39 NaN NaN 107410.2 NaN 6175 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8695 45.069 NaN 51786 35 0 3367.8 0.261 -1 VMSQALKATF 10 47 556.2941079331289 1110.5736629330577 2 556.2940063476562 MULTI HCD FTMS 0 0 0 8688 43067.9609375 0.14832801282132002 34 -0.8666572570800781 7 Oxidation (M) _VM(Oxidation (M))SQALKATF_ ENSG00000157557|ENST00000360938|ETS2 20.580933911654288 0.31860490502175054 2 T{M(Oxidation (M))|F} 2 -1 26.211 0 0 2.3602 0 0 844.4466925734858 0 844.4466925734858 0 10.753800256993953 0 0 0 0.8252574989159953 0 0 0 T{M(Oxidation (M))|F} 2.3602 + + 18 + NaN NaN 88950.5 NaN 6176 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8696 45.072 NaN 55817 35 0 6036.8 0.262 + 25698 SISGSYFF 8 35 454.2144859509634 NaN 0 454.2146301269531 PEAK HCD FTMS 0 0 0 8688 16741.234375 0.8881462611079002 1 -0.02972412109375 8 Unmodified _SISGSYFF_ ENST00000536607.1_1_6:160208906-160210500:-|nuORF;ENST00000545764.1_1_6:160208906-160209185:-|nuORF 2.8892196856762586 0.38822285293237185 2 W 1 8 6.9897 0 0 0.77114 0 0 123.08087512282687 594.2351888865941 717.316064009421 0 0 0 0 0 0 0 0 0 W 0.77114 - 4 + NaN NaN 88319.8 NaN 6177 2517 8688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8698 45.077 NaN 584320 35 0 61595 0.327 + 25194 SANLEEVTM 9 73 505.2289868809931 1008.4434208287862 2 505.22906494140625 MULTI HCD FTMS 0 0 0 8697 261323.453125 0.7175836670317935 -4 0.118896484375 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 121.5340881639634 0.001118397630175091 2 {I|L}EEVT{M(Oxidation (M))|F} 6 3 71.943 0 0 7.1341 0 0 272.1128102033219 0 272.1128102033219 0 58.13100339696028 0 0 0 2.274227503252014 0 1.1549471895720984 0 + {I|L}EEVT{M(Oxidation (M))|F} 7.1341 + + 360 NaN NaN 175305 NaN 6178 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8699 45.082 NaN 433360 35 0 89548 0.261 + 4004 ERNLAEQSSM 10 54 582.7695862056189 1163.5246194780377 2 582.7696533203125 MULTI HCD FTMS 0 0 0 8697 187819.65625 0.842149327003302 1 -0.036342620849609375 2 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 12.240655878213236 0.39661705172222156 2 {M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 8 -1 53.805 0 0 4.6243 0 0 319.16429335761876 0 319.16429335761876 0 21.977437731477423 0 0 0 1.805462187404089 0 0 0 {M(Oxidation (M))|F}STSVS{[MS]|[{M(Oxidation (M))|F}A]} 4.6243 - 255 NaN NaN 151906 NaN 6179 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8700 45.085 NaN 156690 35 0 18515 0.261 + 13933 KYQPRIAVF 9 57 561.3268619833847 1120.6391710335693 2 561.326904296875 MULTI HCD FTMS 0 0 0 8697 117107.4375 0.2043698068895606 7 -0.16782379150390625 3 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 32.30548876998284 0.10066689432505688 2 KYQ 3 6 34.693 0 0 3.0958 0 0 0 698.398563513021 698.398563513021 15.228787452803374 0 0 0 0 0.5 0 0 0.3494850021680094 + KYQ 3.0958 + + 20 + NaN NaN 105586.3 NaN 6180 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8701 45.089 NaN 136550 35 0 8555.7 0.261 + 1586 AYVHMVTHF 9 48 552.7682830401682 1103.5220131471362 2 552.7687377929688 MULTI HCD FTMS 0 0 0 8697 55772.9921875 0.03253028115354984 24 -0.6201629638671875 4 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 67.34385681178166 0.00994769994983633 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F} 9 0 + 76.889 0 0 6.9676 6.9676 92.435 0 0 0 15.31234684152075 16.478174818886373 15.31234684152075 15.31234684152075 0 2.1989700043360187 1.6989700043360187 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F};{M(Oxidation (M))|F}SVHWNV{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}SVHWGGV{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}SVH{[NV]|[RG]}W{[ES]|[DT]|[{I|L}C]} 6.9676;5.58;5.1294;4.295;3.8833 +;-;-;-;- + 190 NaN NaN 108788 NaN 6181 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8702 45.092 NaN 188100 35 0 19420 0.261 + 18343 MPHVQDPSL 9 53 512.2499895440883 1022.4854261549766 2 512.2500610351562 MULTI HCD FTMS 0 0 0 8697 75570.7421875 0.7498086537643157 -3 0.08587265014648438 5 Unmodified _MPHVQDPSL_ ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF 55.50274090549119 0.023872834264864425 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}MVQDPS{I|L} 9 2 + 63.031 0 0 6.1645 6.1645 90.565 0 0 0 4.762036441594191 49.53578771929884 4.762036441594191 13.015384402724592 0 2.142159058960253 0 0 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}MVQDPS{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}MV[AG]DPS{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}MVQ[PS]D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}MV[AG][PS]D{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{NN|[MP]|[D{I|L}]|[EV]}[WQ]{M(Oxidation (M))|F} 6.1645;4.8915;3.9414;2.6685;1.0968 -;-;-;-;- 210 NaN NaN 114434.5 NaN 6182 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8703 45.095 NaN 92695 35 0 9301.2 0.261 + 28547 TPRDVDAPL 9 47 492.26129272953466 982.5080325258693 2 492.2610778808594 MULTI HCD FTMS 0 0 0 8697 41232.8984375 0.5692771948535844 5 -0.12848281860351562 6 Unmodified _TPRDVDAPL_ REV__ENST00000556440.6_2_17:62502882-62503020:+|nuORF 6.2057823575117 0.30397260197431997 2 D 1 -1 7.7642 0 0 0.79024 0 0 568.2943006916881 296.1612948053344 864.4555954970226 0 0 0 0 0 0.5 0 0 0 D 0.79024 + + 6 + NaN NaN 99187.2 NaN 6183 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8704 45.098 NaN 226530 35 0 36743 0.261 + 5616 FLYIRKRRF 9 48 433.5994048491334 1297.7763851476002 3 433.5994567871094 MULTI HCD FTMS 0 0 0 8697 37719.546875 0.5392236728040223 -4 0.118896484375 7 Unmodified _FLYIRKRRF_ REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.0772 0 0 1132.6976630790439 0 1132.6976630790439 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0772 + + 5 + NaN NaN 128427 NaN 6184 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8705 45.102 NaN 73658 35 0 13251 0.261 + 20549 PEDAPSPEL 9 37 477.72443272898704 953.4343125247741 2 477.72430419921875 MULTI HCD FTMS 0 0 0 8697 34217.8671875 0.6976781452815232 -3 0.08587265014648438 8 Unmodified _PEDAPSPEL_ ENSG00000142039|ENST00000269967|CCDC97 20.453626601364224 0.18364154288633264 2 {I|L} 1 8 0.088644 0 0 0.0092973 0 0 476.6699825460616 360.6466158502563 837.3165983963179 0 0 0 0 0 0 0 0 0 + {I|L} 0.0092973 + + 1 + NaN NaN 99386.9 NaN 6185 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8706 45.105 NaN 121650 35 0 20715 0.261 -1 NPDEFYYKM 9 46 611.7579393102635 1221.501325687327 2 611.7579345703125 MULTI HCD FTMS 0 0 0 8697 32635.232421875 0.3484231912697311 12 -0.3028450012207031 9 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 18.373094154950223 0.20161688160436167 2 N[DP]E{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 9 -1 + 33.606 0 0 2.7512 2.7512 88.533 0 0 0 12.636824930454019 7.632192780232792 7.632192780232792 33.60592506053458 0 0.7742275032520141 0 0 0 N[DP]E{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F} 2.7512 + + 27 + NaN NaN 110711.5 NaN 6186 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8707 45.108 NaN 107230 35 0 16903 0.263 + 5664 FNTERNVL 8 48 496.76147831754827 991.5084037018966 2 496.7608642578125 MULTI HCD FTMS 0 0 0 8697 41894.26953125 0.933075898477228 -1 0.02972412109375 10 Unmodified _FNTERNVL_ REV__ENSG00000111879|ENST00000338891|FAM184A;REV__nc|ENSG00000111879|Q8NB25-3|FAM184A;REV__nc|ENSG00000111879|Q8NB25-4|FAM184A 6.723162845929126 0.5320176132289695 2 V{I|L} 2 -1 20.969 0 0 2.1149 0 0 761.3444840708815 0 761.3444840708815 0 19.3753063169585 0 0 0 0 0 0 0 V{I|L} 2.1149 + + 2 NaN NaN 104517 NaN 6187 2518 8697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8709 45.114 NaN 678010 35 0 222400 0.327 -1 IEQMVILMAVF 11 39 437.23484766551707 1308.6827135967512 3 437.2347412109375 MULTI HCD FTMS 0 0 0 8708 231604.46875 1 0 0 1 Oxidation (M) _IEQM(Oxidation (M))VILMAVF_ ENSG00000179695|ENST00000641202|OR6C2 6.623454094837244 0.3898724468670146 2 VV{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.766 0 0 945.4676745202165 0 945.4676745202165 0 29.20818753952375 0 0 0 1 0 0 0 VV{M(Oxidation (M))|F} 2.766 - 28 NaN NaN 186448.6 NaN 6188 2519 8708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8710 45.118 NaN 265400 35 0 28247 0.261 + 34646 YPSEQEKALL 10 72 589.308701036334 1176.602849139468 2 589.30859375 MULTI HCD FTMS 0 0 0 8708 165916.265625 0.7072541526027519 4 -0.09214019775390625 2 Unmodified _YPSEQEKALL_ ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 77.04852534044906 0.009233459585674255 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L}{I|L} 10 0 + 76.349 0 0 6.4889 6.4889 88.57 0 0 0 12.5609364677859 12.5609364677859 12.5609364677859 9.164539485499247 0 2.1307196863200843 1.5228787452803376 0.3807196863200844 0.3054621874040891 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SEQEKA{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE[AG]EKA{I|L}{I|L};YPSEQEKA{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV[HC]YA{I|L}{I|L} 6.4889;5.71;5.4214;2.9661 +;-;+;- + 428 NaN NaN 133024.2 NaN 6189 2519 8708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8711 45.122 NaN 95356 35 0 11279 0.261 -1 TTMIMIGMVSF 11 40 639.7912525965035 1277.5679522598068 2 639.7910766601562 MULTI HCD FTMS 0 0 0 8708 42276.828125 0.8745077753197854 1 -0.023052215576171875 3 3 Oxidation (M) _TTM(Oxidation (M))IM(Oxidation (M))IGM(Oxidation (M))VSF_ ENSG00000119457|ENST00000374228|SLC46A2 8.155526934196011 0.3831532958467648 2 C(Carbamidomethyl (C))TNS{M(Oxidation (M))|F} 5 -1 48.443 0 0 3.7918 0 0 650.3258534162125 0 650.3258534162125 0 42.95880017344075 0 0 0 0.9247425010840047 0 0.4247425010840047 0 C(Carbamidomethyl (C))TNS{M(Oxidation (M))|F} 3.7918 - 64 NaN NaN 96552 NaN 6190 2519 8708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8712 45.125 NaN 157240 35 0 10149 0.263 -1 GTFAMAWTM 9 51 516.2200817999942 1030.4256106667883 2 516.2201538085938 MULTI HCD FTMS 0 0 0 8708 48802.9921875 1 0 0 4 Oxidation (M) _GTFAMAWTM(Oxidation (M))_ ENST00000353917.9_1_20:43929601-43932870:-|nuORF 14.838274106304384 0.23215694253501695 2 {[SA]|[TG]}N{I|L} 4 -1 28.258 0 0 2.7423 0 0 0 642.2072935541825 642.2072935541825 -1.2062907165159231 0 -1.2062907165159231 0 0 1.2059771852360797 0 0 0 {[SA]|[TG]}N{I|L} 2.7423 - 59 + NaN NaN 105078.8 NaN 6191 2519 8708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8713 45.128 NaN 122340 35 0 14650 0.261 + 30760 VPNEEDPSL 9 38 500.23426305590715 998.4539731786143 2 500.2351989746094 MULTI HCD FTMS 0 0 0 8708 59639.84375 0.6252226678536825 -6 0.17828369140625 5 Unmodified _VPNEEDPSL_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 20.41453444215458 0.18397929046831515 2 DPS{I|L} 4 5 46.186 0 0 4.6257 0 0 568.2492292260325 0 568.2492292260325 0 46.18562527100117 0 0 0 1 0 0.4247425010840047 0 + DPS{I|L} 4.6257 + + 7 NaN NaN 98783.5 NaN 6192 2519 8708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8714 45.132 NaN 148600 35 0 9856.1 0.261 -1 HEVENCCD 8 66 531.6845145729944 1061.3544762127888 2 531.6853637695312 MULTI HCD FTMS 0 0 0 8708 25939.58984375 0.8168547095537423 -1 0.036342620849609375 6 2 Carbamidomethyl (C) _HEVENC(Carbamidomethyl (C))C(Carbamidomethyl (C))D_ ENST00000369878.8_1_10:104837250-104837358:+|nuORF 0.6014990680409731 0.5410999795511968 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[WQ]KD 7 -1 30.59 0 0 2.8822 0 0 0 127.86372849233875 127.86372849233875 25.985994592184554 0 0 0 0 0 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[WQ]KD 2.8822 - 70 NaN NaN 115478.2 NaN 6193 2519 8708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8716 45.137 NaN 1001000 35 0 85021 0.327 + 12332 KMPKFKMPSF 10 103 419.555750436048 1255.6454219083441 3 419.5557861328125 MULTI HCD FTMS 0 0 0 8715 411345.5 0.9744846461761468 3 -0.06908798217773438 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 76.41605946988834 0.009982875570622314 2 K{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 74.991 0 0 5.9723 5.9723 87.5 0 0 0 53.792841131604874 14.530162782510487 14.530162782510487 8.781446971601312 0 2.135151878060192 0 1.055462187404089 0 + + K{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 5.9723;5.2729 +;- + 455 + NaN NaN 231421.2 NaN 6194 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8717 45.141 NaN 375010 35 0 41947 0.261 + 10875 IVYASVSSIC 10 72 521.2683796825521 NaN 0 521.2553100585938 PEAK HCD FTMS 0 0 0 8715 10448.998046875 0.4929524735864036 -8 0.22103118896484375 2 Unmodified _IVYASVSSIC_ ENSG00000100473|ENST00000396618|COCH;ENST00000553772.5_1_14:31344123-31349661:+|nuORF;nc|ENSG00000100473|O43405-2|COCH 11.640296217721598 0.3302218087712401 2 CSTGE 5 9 25.477 0 0 2.4485 0 0 131.12082355747503 429.22516809635005 560.3459916538251 0 0 0 0 0 0 0 0.805462187404089 0 CSTGE 2.4485 - 289 + NaN NaN 135149.4 NaN 6195 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8718 45.145 NaN 205690 35 0 59393 0.261 -1 MHCDGGISMIL 11 45 617.7667963563049 1233.5190397794097 2 617.7670288085938 MULTI HCD FTMS 0 0 0 8715 80228.984375 0.6946895902124851 -2 0.05939483642578125 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 13.042465956692817 0.3434429782671734 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 44.993 0 0 3.6475 0 0 713.2635365216812 0 713.2635365216812 0 39.508272069161734 0 0 0 0.5 0 0.805462187404089 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.6475 - 15 NaN NaN 126474.4 NaN 6196 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8719 45.148 NaN 247530 35 0 28248 0.262 + 15983 LPQPFPELS 9 56 514.2758188772219 1026.5370848212438 2 514.2752685546875 MULTI HCD FTMS 0 0 0 8715 73289.625 0.7952135311227793 1 -0.02977752685546875 4 Unmodified _LPQPFPELS_ ENST00000367568.4_1_6:144508664-144508748:+|nuORF 19.256988751693697 0.19398022840297344 2 {I|L}P 2 7 39.196 0 0 3.8183 0 0 0 813.3822644664073 813.3822644664073 23.121082701432503 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 + {I|L}P 3.8183 + + 50 + NaN NaN 126268.3 NaN 6197 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8720 45.151 NaN 136710 35 0 27077 0.261 + 7343 FVDDTNVYR 9 39 564.7690312605342 1127.5235095878684 2 564.7696533203125 MULTI HCD FTMS 0 0 0 8715 48026.4296875 0.3810451665042558 4 -0.08874893188476562 5 Unmodified _FVDDTNVYR_ ENSG00000174231|ENST00000304992|PRPF8 10.073929032068715 0.27331982688540024 2 D{NN|[MP]|[D{I|L}]|[EV]} 3 7 19.705 0 0 1.7476 0 0 766.360684723691 0 766.360684723691 0 19.7049999164468 0 0 0 0.9247425010840047 0 0 0 D{NN|[MP]|[D{I|L}]|[EV]} 1.7476 - 6 NaN NaN 104016.5 NaN 6198 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8721 45.155 NaN 201270 35 0 49262 0.264 + 10751 IRVWFQNKR 9 44 416.2436918347977 1245.7092461045931 3 416.2436828613281 MULTI HCD FTMS 0 0 0 8715 32025.626953125 0.023279399445503193 59 -1.377593994140625 6 Unmodified _IRVWFQNKR_ ENSG00000016082|ENST00000230658|ISL1;ENSG00000159556|ENST00000290759|ISL2 4.897010918128616 0.31389406404703984 2 R 1 8 13.099 0 0 1.0515 0 0 1071.5978854862321 0 1071.5978854862321 0 7.614393726401687 0 0 0 0 0 0 0 + R 1.0515 + + 7 + NaN NaN 121092.1 NaN 6199 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8722 45.158 NaN 123680 35 0 24610 0.261 -1 NPDEFYYKM 9 46 611.7579393102635 1221.501325687327 2 611.7581787109375 MULTI HCD FTMS 0 0 0 8715 11958.2685546875 0.1276699377538955 14 -0.3484840393066406 7 Oxidation (M) _NPDEFYYKM(Oxidation (M))_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 15.248480904072842 0.22861284681709862 2 NPDE{M(Oxidation (M))|F}YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 -1 + 41.604 0 0 3.406 3.406 89.316 0 0 0 36.99986893552975 3.65279269351241 3.65279269351241 41.20033811855194 0 0 0 0 0 NPDE{M(Oxidation (M))|F}YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};YYE{[MG]|[TS]}{[RE]|[WV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3.406;0.033043 +;- + 48 + NaN NaN 109098.1 NaN 6200 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8723 45.161 NaN 49999 35 0 5099.2 0.264 + 2582 DTNLKLTL 8 37 459.26871813407047 916.522883334941 2 459.26837158203125 MULTI HCD FTMS 0 0 0 8715 20983.544921875 1 0 0 8 Unmodified _DTNLKLTL_ ENSG00000196396|ENST00000371621|PTPN1 6.2057823575117 0.5327852213979698 2 T{I|L} 2 6 25.969 0 0 2.8334 0 0 684.3825550763687 0 684.3825550763687 0 25.969100130080562 0 0 0 0.5 0 0 0 + T{I|L} 2.8334 + + 2 NaN NaN 91051.4 NaN 6201 2520 8715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8725 45.166 NaN 635120 35 0 71960 0.326 + 22865 QYNPKFQTL 9 92 569.7981434352345 1137.5817339372688 2 569.7981567382812 MULTI HCD FTMS 0 0 0 8724 194601.984375 0.43004508134738534 3 -0.058971405029296875 1 Unmodified _QYNPKFQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 106.94017166704063 0.003441928997083001 2 [YQ]NPK{M(Oxidation (M))|F}QT{I|L} 9 0 + 61.364 0 0 5.3943 5.3943 87.519 0 0 0 13.752093755964893 21.475840860103503 13.752093755964893 9.208187539523749 0 1.5044321917401078 1.154901959985743 1.565146474325326 0 + + [YQ]NPK{M(Oxidation (M))|F}QT{I|L};[YQ]GGPK{M(Oxidation (M))|F}QT{I|L};[YQ]NPK{M(Oxidation (M))|F}[AG]T{I|L};[YQ]GGPK{M(Oxidation (M))|F}[AG]T{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}N[YK]{[QV]|[N{I|L}]|[RA]|[KV]}T{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}NP{[HG]|PP}{[QV]|[N{I|L}]|[RA]|[KV]}T{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}QQ{[QV]|[N{I|L}]|[RA]|[KV]}T{I|L};[NS]W[YK]{[QV]|[N{I|L}]|[RA]|[KV]}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[C(Carbamidomethyl (C))R]Q{[QV]|[N{I|L}]|[RA]|[KV]}T{I|L};T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[SG]K{M(Oxidation (M))|F}QT{I|L} 5.3943;4.5848;4.5848;3.7792;2.8183;2.5134;1.4978;1.41;1.41;1.2009 +;-;-;-;-;-;-;-;-;- + 1588 + NaN NaN 174330.2 NaN 6202 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8726 45.171 NaN 669650 35 0 66585 0.261 + 6873 FPTVQHQEL 9 97 549.782628470985 1097.5507040087698 2 549.7826538085938 MULTI HCD FTMS 0 0 0 8724 287888.21875 0.6590732447722267 -4 0.118896484375 2 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 163.68669969883206 7.261465303366562E-09 2 {M(Oxidation (M))|F}PTVQHQE{I|L} 9 0 + 91.729 0 0 8.3576 8.3576 92.566 0 0 0 54.78260670720018 6.7394741730716134 6.7394741730716134 9.208187539523749 0 2.4916440611282624 0 1.6549471895720984 1.5471062485323515 + + {M(Oxidation (M))|F}PTVQHQE{I|L};{M(Oxidation (M))|F}PTV[AG]HQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQHQE{I|L};{M(Oxidation (M))|F}PTVQH[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQHQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQH[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQH[AG]{I|L}E;{[QN]|[E{I|L}]|[KN]}[WP]QVTPE;{M(Oxidation (M))|F}{I|L}[PS]QHQE{I|L};{M(Oxidation (M))|F}PTV[AG]H[AG]E{I|L} 8.3576;7.5186;7.4515;7.2908;7.1086;6.6125;6.2696;5.5551;5.3094;5.274 +;-;+;-;-;-;-;-;-;- + 2958 + NaN NaN 191921.5 NaN 6203 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8727 45.174 NaN 247960 35 0 45002 0.261 + 13409 KYPENDLFRKL 11 49 474.92961683179243 1421.7670210955773 3 474.9292297363281 MULTI HCD FTMS 0 0 0 8724 83400.8046875 0.5451358664707808 3 -0.058971405029296875 3 Unmodified _KYPENDLFRKL_ ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A 28.270515756011903 0.21249163100647533 2 {M(Oxidation (M))|F}{I|L}[DN][EP]C(Carbamidomethyl (C)){I|L} 8 8 29.698 0 0 2.0888 0 0 415.29258925605626 0 415.29258925605626 0 29.69782205064881 0 0 0 0.8807196863200843 0 0 0.3494850021680094 {M(Oxidation (M))|F}{I|L}[DN][EP]C(Carbamidomethyl (C)){I|L} 2.0888 - 17 NaN NaN 121900.5 NaN 6204 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8728 45.178 NaN 121910 35 0 7690.8 0.261 -1 MLIEKDPSL 9 48 531.2808756229659 1060.5471983127318 2 531.28125 MULTI HCD FTMS 0 0 0 8724 59468.171875 0.439970341595323 -17 0.4547767639160156 4 Oxidation (M) _M(Oxidation (M))LIEKDPSL_ ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 34.93206674587334 0.08860942999206235 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EKD[PS]{I|L} 9 -1 + 53.064 0 0 5.0034 5.0034 91.613 0 0 0 3.9326276336512933 48.459471728614574 3.9326276336512933 53.06356549837645 0 1.992992819099939 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EKD[PS]{I|L} 5.0034 + + 43 NaN NaN 101314.4 NaN 6205 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8729 45.181 NaN 134770 35 0 18002 0.261 + 24917 RYSEYAEEF 9 41 597.2593725232799 1192.5041921133597 2 597.2600708007812 MULTI HCD FTMS 0 0 0 8724 57282.57421875 0.5257966420212957 -2 0.052829742431640625 5 Unmodified _RYSEYAEEF_ ENSG00000139505|ENST00000381801|MTMR6 32.037481411007896 0.10189719824197178 2 E[RH]AEE{M(Oxidation (M))|F} 7 5 48.231 0 0 4.0446 0 0 276.110643455275 0 276.110643455275 0 45.75720713938118 0 0 0 1.3494850021680094 0 0 0 E[RH]AEE{M(Oxidation (M))|F} 4.0446 - 55 NaN NaN 99019.6 NaN 6206 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8730 45.184 NaN 41850 35 0 4160.9 0.261 -1 KMIYLQWKM 9 30 628.8302605184757 NaN 0 628.8297729492188 PEAK HCD FTMS 0 0 0 8724 9613.0263671875 0.5592184527439925 1 -0.026294708251953125 6 Oxidation (M) _KM(Oxidation (M))IYLQWKM_ ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-2|N4BP2L2;nc|ENSG00000244754|Q92802-3|N4BP2L2 1.844237919475145 0.28630992268396543 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.55666 0 0 128.09666516791145 977.496654773833 1105.5933199417445 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.55666 + + 2 + NaN NaN 93437.9 NaN 6207 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8731 45.188 NaN 47065 35 0 6417.3 0.261 -1 0 26 626.0575320745235 NaN 0 626.291259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 PY 2 -1 7.0783 0 0 0.56622 0 0 692.9395747918219 294.0107821100219 986.9503569018439 0 0 0 0 0 0 0 0 0 PY 0.56622 - 6 + NaN NaN 103489.5 NaN 6208 2521 8724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8733 45.193 NaN 250140 35 0 20750 0.327 + 3623 ELAQVIVSR 9 68 507.801060533263 1013.587568133326 2 507.80059814453125 MULTI HCD FTMS 0 0 0 8732 71744.9375 0.5982373553020409 2 -0.03267669677734375 1 Unmodified _ELAQVIVSR_ ENSG00000140632|ENST00000321919|GLYR1;ENST00000587936.5_1_16:4862027-4863884:-|nuORF;GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1 27.223235318498237 0.1251536255799991 2 {[QN]|[E{I|L}]|[KN]}AQV{I|L}V 7 2 45.221 0 0 4.4615 0 0 0 258.1202791803344 258.1202791803344 21.777807052660805 0 0 0 0 0.3494850021680094 1.3010299956639813 0 0 + {[QN]|[E{I|L}]|[KN]}AQV{I|L}V 4.4615 + + 151 + NaN NaN 126947.4 NaN 6209 2522 8732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8734 45.197 NaN 152710 35 0 14845 0.261 + 32981 YAQNNFLAN 9 52 527.7519370243183 NaN 0 527.763671875 PEAK HCD FTMS 0 0 0 8732 12123.4501953125 1 0 0 2 Unmodified _YAQNNFLAN_ REV__ENSG00000167972|ENST00000301732|ABCA3 7.910154910731844 0.25691533546754686 2 TT 2 -1 15.217 0 0 1.4444 0 0 165.05373543167735 683.3148287408811 848.3685641725585 0 0 0 0 0 0 0 0.4247425010840047 0 TT 1.4444 - 12 + NaN NaN 101996.5 NaN 6210 2522 8732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8735 45.201 NaN 60432 35 0 4168.4 0.261 + 9152 HPIDQSLVVH 10 47 572.8090648531734 1143.6035767731466 2 572.80908203125 MULTI HCD FTMS 0 0 0 8732 18205.017578125 0.5271417544937556 5 -0.10836029052734375 3 Unmodified _HPIDQSLVVH_ REV__ENSG00000123384|ENST00000243077|LRP1;REV__LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 3.2813086475875832 0.45793521633868084 2 VH 2 -1 19.464 0 0 1.702 0 0 0 904.4581392877561 904.4581392877561 4.006375246153906 0 0 0 0 0 0 0 0 VH 1.702 + + 6 + NaN NaN 100356.4 NaN 6211 2522 8732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8737 45.206 NaN 649860 35 0 73585 0.327 + 25195 SANLEEVTM 9 71 505.2289868809931 1008.4434208287862 2 505.2289733886719 MULTI HCD FTMS 0 0 0 8736 336376.9375 0.9236775093459167 1 -0.01966094970703125 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 106.94017166704063 0.003441928997083001 2 {I|L}EEVT{M(Oxidation (M))|F} 6 3 72.256 0 0 7.1651 0 0 272.1112232892594 0 272.1112232892594 0 57.07834387816234 0 0 0 2.274227503252014 0 1.1861818737241734 0 + {I|L}EEVT{M(Oxidation (M))|F} 7.1651 + + 260 NaN NaN 198558.2 NaN 6212 2523 8736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8738 45.21 NaN 164680 35 0 26861 0.261 -1 NALLNNSNSAM 11 47 582.7695862056189 1163.5246194780377 2 582.7694091796875 MULTI HCD FTMS 0 0 0 8736 58445.30078125 0.26205814504271435 6 -0.14142227172851562 2 Oxidation (M) _NALLNNSNSAM(Oxidation (M))_ tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1 10.150570793230772 0.3686401556411756 2 STSVS{[MS]|[{M(Oxidation (M))|F}A]} 7 -1 37.963 0 0 3.2628 0 0 466.23179824043126 0 466.23179824043126 0 26.994332193581414 0 0 0 0.9247425010840047 0 0 0 STSVS{[MS]|[{M(Oxidation (M))|F}A]} 3.2628 - 113 NaN NaN 112068.8 NaN 6213 2523 8736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8739 45.214 NaN 102970 35 0 19691 0.261 + 31169 VVAPPGVVVSR 11 31 540.3322070122617 1078.6498610913234 2 540.33251953125 MULTI HCD FTMS 0 0 0 8736 29676.296875 0.8544942105283285 -2 0.039310455322265625 3 Unmodified _VVAPPGVVVSR_ ENSG00000145191|ENST00000648915|EIF2B5;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENST00000491144.5_1_3:183853173-183855624:+|nuORF 10.799506525563784 0.36298595732910816 2 VVAP 4 7 41.682 0 0 3.8643 0 0 0 709.3997896783811 709.3997896783811 34.69273760456403 0 0 0 0 1 1.6989700043360187 0 0 + VVAP 3.8643 + + 8 + NaN NaN 102343.1 NaN 6214 2523 8736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8740 45.217 NaN 32449 35 0 4518.5 0.262 + 16415 LSKILRAKKHK 11 23 441.2973869564566 NaN 0 441.2972717285156 PEAK HCD FTMS 0 0 0 8736 10583.103515625 0.41401466508667334 23 -0.5769233703613281 4 Unmodified _LSKILRAKKHK_ tr|U7SUI8|U7SUI8_FUSNURibonucleaseROS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnrPE=3SV=1 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84115.2 NaN 6215 2523 8736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8741 45.22 NaN 66803 35 0 11471 0.261 -1 TYMDRVFKQF 10 37 450.88832311706716 1349.6431399514015 3 451.2224426269531 MULTI HCD FTMS 0 0 0 8736 13698.9912109375 0.4999513155944847 -5 0.12848281860351562 5 Oxidation (M) _TYM(Oxidation (M))DRVFKQF_ ENSG00000158201|ENST00000289119|ABHD3 5.047519993296601 0.4485863789024576 2 TY 2 -1 45.217 0 0 3.3503 0 0 0 1082.507849028728 1082.507849028728 42.74227503252014 0 0 0 0 0.4247425010840047 2 0 0 TY 3.3503 + + 5 + NaN NaN 90106.5 NaN 6216 2523 8736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8743 45.225 NaN 425860 35 0 91569 0.326 + 15528 LPDPGSPRL 9 54 476.2666239380118 950.5186949428236 2 476.26641845703125 MULTI HCD FTMS 0 0 0 8742 211106.609375 0.34979473400183986 -5 0.1118011474609375 1 Unmodified _LPDPGSPRL_ ENSG00000188522|ENST00000388995|FAM83G 47.594388314883695 0.03493607795751234 2 {I|L}PDPGS 6 3 74.76 0 0 7.8652 0 0 0 381.2249849908813 381.2249849908813 49.698799121841034 0 0 0 0 1.5387254899964358 1.3979400086720375 0.4247425010840047 0 + {I|L}PDPGS 7.8652 + + 86 + NaN NaN 159044.2 NaN 6217 2524 8742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8744 45.23 NaN 215190 35 0 13258 0.261 + 4181 ETSPLTAEKL 10 55 544.795590657463 1087.5766283817259 2 544.79541015625 MULTI HCD FTMS 0 0 0 8742 86380.2109375 0.3843670698221707 -5 0.1118011474609375 2 Unmodified _ETSPLTAEKL_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 16.565877749689598 0.3561603856738253 2 K{M(Oxidation (M))|F}CTAE[K{I|L}] 8 5 45.196 0 0 4.1556 0 0 149.10667889483278 0 149.10667889483278 0 14.745914951460648 0 0 0 0.3252574989159953 0 0.3807196863200844 0 K{M(Oxidation (M))|F}CTAE[K{I|L}] 4.1556 - 201 + NaN NaN 119584.3 NaN 6218 2524 8742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8745 45.233 NaN 103470 35 0 10610 0.261 + 1587 AYVHMVTHF 9 51 552.7682830401682 1103.5220131471362 2 552.7689819335938 MULTI HCD FTMS 0 0 0 8742 69971.921875 0.040811980892036914 30 -0.7578201293945312 3 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 57.47134341890925 0.0211188941628804 2 {M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F} 9 2 + 62.942 0 0 5.7037 5.7037 92.986 0 0 0 46.97071216154299 8.256886463274284 8.256886463274284 62.941993906176776 0 1.610924374808178 0 1 0 {M(Oxidation (M))|F}SVHMVTH{M(Oxidation (M))|F} 5.7037 - 79 + NaN NaN 98367.3 NaN 6219 2524 8742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8746 45.237 NaN 69215 35 0 6430.4 0.261 + 13934 KYQPRIAVF 9 42 561.3268619833847 1120.6391710335693 2 561.3269653320312 MULTI HCD FTMS 0 0 0 8742 37319.15625 0.06512744979236557 13 -0.343841552734375 4 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 6.723162845929126 0.3000504726104499 2 KYQ 3 6 29.45 0 0 2.628 0 0 0 698.3975313775999 698.3975313775999 18.975993204333147 0 0 0 0 0.3252574989159953 0 0 0 + KYQ 2.628 + + 19 + NaN NaN 103823.9 NaN 6220 2524 8742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8747 45.24 NaN 32123 35 0 5624.6 0.261 + 22995 RAFLELKLLY 10 24 633.3819595584839 NaN 0 633.0015869140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RAFLELKLLY_ ENST00000199764.6_1_19:42259386-42260556:+|nuORF 1.1933415558491238 0.33916295405077446 2 {I|L} 1 9 4.6041 0 0 0.36403 0 0 650.3876851308365 498.2591646783813 1148.6468498092179 0 0 0 0 0 0 0 0 0 + {I|L} 0.36403 + + 1 + NaN NaN 116142.6 NaN 6221 2524 8742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8749 45.245 NaN 399600 35 0 34562 0.327 + 23611 RPITDSPVL 9 74 499.28751388891715 996.5604748446343 2 499.28753662109375 MULTI HCD FTMS 0 0 0 8748 125045.6953125 0.5392483589930738 -5 0.108428955078125 1 Unmodified _RPITDSPVL_ ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B 38.175570920033316 0.07371992880350783 2 SPV{I|L} 4 5 48.844 0 0 4.9013 0 0 582.3091908185562 0 582.3091908185562 0 27.6869160710703 0 0 0 0.805462187404089 0 1.1237125054200234 0 + SPV{I|L} 4.9013 + + 225 NaN NaN 148763.1 NaN 6222 2525 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8750 45.249 NaN 210690 35 0 33426 0.261 + 1461 AYSRVQYQF 9 50 581.2882143840081 1160.5618758348162 2 581.287841796875 MULTI HCD FTMS 0 0 0 8748 88156.6328125 0.8225980045742782 -1 0.019680023193359375 2 Unmodified _AYSRVQYQF_ BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 43.77239144664712 0.04802738721622131 2 YQ{M(Oxidation (M))|F} 3 6 39.693 0 0 3.4201 0 0 704.3602285070629 0 704.3602285070629 0 32.70303756120384 0 0 0 0.9247425010840047 0 0 0.4247425010840047 + YQ{M(Oxidation (M))|F} 3.4201 + + 55 NaN NaN 114955.6 NaN 6223 2525 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8751 45.253 NaN 236560 35 0 31688 0.261 + 34385 YPEKIQASL 9 70 524.7871936135191 1047.559834293838 2 524.786865234375 MULTI HCD FTMS 0 0 0 8748 80559.765625 0.2543820974446757 -4 0.07865142822265625 3 Unmodified _YPEKIQASL_ ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD;nc|ENSG00000122882|O95905-3|ECD 63.227496030279354 0.01306643085373406 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]QAS{I|L} 9 0 + 67.059 0 0 6.4014 6.4014 89.845 0 0 0 12.996384138564778 12.996384138564778 12.996384138564778 9.208187539523756 0 1.6643943297944483 1.5228787452803376 0.6861818737241735 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]QAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}][AG]AS{I|L};YPE[K{I|L}]QAS{I|L};YPE[KP][KS]S{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]D[NG]{I|L};[EP]Y[K{I|L}]QAS{I|L};[EP]K[Y{I|L}]QAS{I|L};[EP]Y[K{I|L}][AG]AS{I|L};[EP]K[Y{I|L}][AG]AS{I|L};[EP]K[Q{I|L}]YAS{I|L} 6.4014;5.5224;5.1608;4.8709;3.9509;3.8032;3.1141;2.9242;2.2351;1.9702 +;-;+;-;-;-;-;-;-;- + 219 NaN NaN 118133.5 NaN 6224 2525 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8752 45.256 NaN 151060 35 0 10709 0.261 + 18344 MPHVQDPSL 9 59 512.2499895440883 1022.4854261549766 2 512.25 MULTI HCD FTMS 0 0 0 8748 62479.20703125 0.6199151782329917 4 -0.102081298828125 4 Unmodified _MPHVQDPSL_ ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF 12.240655878213236 0.2545997876781172 2 DPS{I|L} 4 5 25.618 0 0 2.5054 0 0 592.2776966779312 0 592.2776966779312 0 20.132965752203233 0 0 0 1.242992819099939 0 0 0 + DPS{I|L} 2.5054 + + 56 NaN NaN 104781.5 NaN 6225 2525 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8753 45.26 NaN 67419 35 0 6016.5 0.261 + 27978 TFDVSPKAV 9 50 482.2609670752899 962.5073812173798 2 482.260986328125 MULTI HCD FTMS 0 0 0 8748 26413.359375 0.25215405031267263 -6 0.13148117065429688 5 Unmodified _TFDVSPKAV_ ENSG00000140678|ENST00000268296|ITGAX 13.042465956692817 0.2476723265019929 2 AP 2 8 19.464 0 0 2.0222 0 0 0 791.3952170555829 791.3952170555829 0.5237875363565792 0 0 0 0 0 0 0 0 AP 2.0222 - 10 + NaN NaN 102910.7 NaN 6226 2525 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8754 45.263 NaN 42936 35 0 6143.9 0.261 + 15187 LMVTMDCFFPR 11 34 453.880101238919 NaN 0 453.8799133300781 PEAK HCD FTMS 0 0 0 8748 4581.82763671875 0.1968956047691477 -1 0.019680023193359375 6 Unmodified _LMVTMDCFFPR_ REV__ENSG00000180042|ENST00000572493|OR1R1P 1.214830529360525 0.33867401910978034 2 P 1 -1 2.4743 0 0 0.27317 0 0 539.0646020366287 266.6068209283813 805.6714229650099 0 0 0 0 0 0 0 0 0 P 0.27317 + + 1 + NaN NaN 86973.6 NaN 6227 2525 8748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8756 45.268 NaN 835200 35 0 70787 0.327 + 12333 KMPKFKMPSF 10 93 419.555750436048 1255.6454219083441 3 419.5557861328125 MULTI HCD FTMS 0 0 0 8755 342911.5 0.812363309546918 9 -0.23676300048828125 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 76.41605946988834 0.009982875570622314 2 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 73.999 0 0 5.8933 5.8933 93.298 0 0 0 53.59341455201003 14.30400924012389 14.30400924012389 64.15643955968291 0 2.079689690656103 0 1.0629529932484498 0 + + K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};[KP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 5.8933;0.7839 +;- + 502 + NaN NaN 225299.8 NaN 6228 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8757 45.272 NaN 216720 35 0 24298 0.261 + 31690 VYKTIMEQF 9 60 587.7941785073192 1173.5738040814383 2 587.794677734375 MULTI HCD FTMS 0 0 0 8755 93595.953125 1 0 0 2 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ BAIAP2-TBCD|1|fusion;ENSG00000175866|ENST00000428708|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2 55.23464941255904 0.024247875903973527 2 [YV]K[{I|L}T]{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F} 9 0 + 65.57 0 0 5.5872 5.5872 86.308 0 0 0 1.140078085766092 47.85716515220539 1.140078085766092 7.470390930149691 0 2.1747425010840047 2 0 0 + + [YV]K[{I|L}T]{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F};[YV]K{[QV]|[N{I|L}]|[RA]|[KV]}EYV{M(Oxidation (M))|F};[YV]K[{I|L}T]{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F};[YV]K[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{[SA]|[TG]}{M(Oxidation (M))|F}[{I|L}T]KP{M(Oxidation (M))|F};[YT]YE{[QV]|[N{I|L}]|[RA]|[KV]}KP{M(Oxidation (M))|F} 5.5872;4.9506;4.8026;4.0384;3.6597;2.9899 +;-;-;-;-;- + 254 NaN NaN 128793.3 NaN 6229 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8758 45.276 NaN 308470 35 0 70606 0.264 -1 0 47 437.24422238010357 436.2369459135036 1 437.23492431640625 MULTI HCD FTMS 0 0 0 8755 4731.20068359375 0.8647051154012658 1 -0.032993316650390625 3 NaN NaN 2 [TA]V{M(Oxidation (M))|F} 4 -1 + 26.198 0 0 6.0054 6.0054 91.982 0 0 0 15.740312677277187 15.740312677277187 15.740312677277187 26.197887582883936 0 0 0 0 0 [TA]V{M(Oxidation (M))|F} 6.0054 - 10 + NaN NaN 142730.3 NaN 6230 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8759 45.279 NaN 181030 35 0 28951 0.261 -1 FPGGKEYLM 9 55 529.2546654512602 1056.4947779693202 2 529.25439453125 MULTI HCD FTMS 0 0 0 8755 62154.35546875 0.6932441749071071 -7 0.15449142456054688 4 Oxidation (M) _FPGGKEYLM(Oxidation (M))_ ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000072958|Q9BXS5-2|AP1M1;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 20.41453444215458 0.18397929046831515 2 GPE 3 -1 29.693 0 0 2.8105 0 0 755.3509388654312 0 755.3509388654312 0 5.228787452803374 0 0 0 0.5 0 0 0 GPE 2.8105 - 37 NaN NaN 119092.9 NaN 6231 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8760 45.283 NaN 174070 35 0 41343 0.262 + 4925 FALHIEKLTKV 11 47 433.5994048491334 1297.7763851476002 3 433.9336853027344 MULTI HCD FTMS 0 0 0 8755 46272 0.759373499323716 -6 0.131439208984375 5 Unmodified _FALHIEKLTKV_ REV__ENSG00000076944|ENST00000221283|STXBP2;REV__nc|ENSG00000076944|Q15833-2|STXBP2;REV__nc|ENSG00000076944|Q15833-3|STXBP2 4.715918219556657 0.3982382512160552 2 Y 1 -1 4.6041 0 0 0.35477 0 0 145.1243829125654 986.5697138979634 1131.694096810529 0 0 0 0 0 0 0 0 0 Y 0.35477 - 1 + NaN NaN 100937.8 NaN 6232 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8761 45.286 NaN 162730 35 0 16467 0.261 + 20579 PEGSPEPEL 9 54 477.72443272898704 953.4343125247741 2 477.72406005859375 MULTI HCD FTMS 0 0 0 8755 40254.6484375 0.820763851438827 5 -0.13503646850585938 6 Unmodified _PEGSPEPEL_ REV__ENSG00000167522|ENST00000301030|ANKRD11;REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF 15.847184025352803 0.2234401846867398 2 [{I|L}P]D 3 -1 17.447 0 0 1.8299 0 0 0 625.2482661216244 625.2482661216244 6.478174818886377 0 0 0 0 0 1.3010299956639813 0 0 [{I|L}P]D 1.8299 - 41 NaN NaN 119576.8 NaN 6233 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8762 45.289 NaN 82801 35 0 8483 0.261 -1 MPDVDLHM 8 42 487.20908528108015 972.4036176289603 2 487.2095031738281 MULTI HCD FTMS 0 0 0 8755 22530.09765625 0.6807338799861911 -2 0.042690277099609375 7 Oxidation (M) _MPDVDLHM(Oxidation (M))_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 34.10243960390752 0.30669083636501265 2 MPDVD[H{I|L}]{M(Oxidation (M))|F} 8 -1 + 43.99 0 0 4.5238 4.5238 90.634 0 0 0 21.999868935529747 17.43501263708417 17.43501263708417 43.989568978889935 0 1.4604093769761874 0 0 0 MPDVD[H{I|L}]{M(Oxidation (M))|F} 4.5238 + + 16 + NaN NaN 103267 NaN 6234 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8763 45.293 NaN 89126 35 0 12329 0.261 -1 0 35 613.112205951038 NaN 0 612.807861328125 PEAK HCD FTMS 0 0 0 8755 12481.3623046875 1 0 0 8 NaN NaN 2 {I|L} 1 -1 4.6041 0 0 0.37609 0 0 767.958102232351 340.14362512760005 1108.1017273599512 0 0 0 0 0 0 0 0 0 {I|L} 0.37609 - 3 + NaN NaN 111221 NaN 6235 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8764 45.296 NaN 30707 35 0 5025 0.261 -1 0 26 641.9974975585938 NaN 0 641.9974975585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88193.6 NaN 6236 2526 8755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8766 45.301 NaN 346610 35 0 37797 0.327 + 1466 AYSTPDKIF 9 70 521.2683796825521 NaN 0 521.2551879882812 PEAK HCD FTMS 0 0 0 8765 15860.6982421875 0.7482603017264574 -1 0.032993316650390625 1 Unmodified _AYSTPDKIF_ ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1 11.640296217721598 0.23883959125015683 2 N{I|L}ETW 5 8 11.771 0 0 1.1313 0 0 213.07315851016386 181.13413416080314 394.20729267096704 0 0 0 0 0 0 0 0 0 N{I|L}ETW 1.1313 - 79 + NaN NaN 148739.3 NaN 6237 2527 8765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8767 45.305 NaN 139530 35 0 37119 0.261 -1 MHCDGGISMIL 11 33 617.7667963563049 1233.5190397794097 2 617.7672119140625 MULTI HCD FTMS 0 0 0 8765 56233.9765625 0.48692076110083027 5 -0.13500595092773438 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 8.745405648335112 0.3805662881914433 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 39.24 0 0 3.1812 0 0 713.2643910138687 0 713.2643910138687 0 39.24024714504206 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.1812 - 8 NaN NaN 110956.9 NaN 6238 2527 8765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8768 45.309 NaN 184760 35 0 29478 0.261 + 9486 HPWEVMPEL 9 48 569.2735448636703 1136.5325367941405 2 569.2734375 MULTI HCD FTMS 0 0 0 8765 63787.78125 0.18534169068249878 36 -0.936065673828125 3 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 7.289230182591677 0.29575926068275815 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3287106811546 752.3287106811546 21.620768972555595 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 23 + NaN NaN 117607 NaN 6239 2527 8765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8769 45.312 NaN 87132 35 0 7012 0.261 + 29364 TYPVLEEMF 9 53 564.7690312605342 1127.5235095878684 2 564.7694702148438 MULTI HCD FTMS 0 0 0 8765 10987.1787109375 0.08717307050644361 11 -0.301177978515625 4 Unmodified _TYPVLEEMF_ sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1 11.640296217721598 0.25978676193971967 2 [YT]P 3 6 29.437 0 0 2.6108 0 0 0 763.3373272971058 763.3373272971058 8.46787486224656 0 0 0 0 0.5 2 0 0 + [YT]P 2.6108 + + 46 NaN NaN 115326.5 NaN 6240 2527 8765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8770 45.316 NaN 29013 35 0 2951.1 0.261 -1 RHCQLWCLV 9 29 607.8013839057962 NaN 0 607.8012084960938 PEAK HCD FTMS 0 0 0 8765 4624.73388671875 0.4109988349734311 1 -0.019672393798828125 5 Carbamidomethyl (C) _RHC(Carbamidomethyl (C))QLWCLV_ ENST00000470364.5_1_1:38335671-38338691:-|nuORF 2.0597508629832335 0.2852655770354268 2 T 1 -1 0.9691 0 0 0.079854 0 0 446.6689166379611 662.8325899713499 1109.501506609311 0 0 0 0 0 0 0 0 0 T 0.079854 - 1 + NaN NaN 95375.3 NaN 6241 2527 8765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8772 45.321 NaN 470870 35 0 56175 0.327 + 6874 FPTVQHQEL 9 89 549.782628470985 1097.5507040087698 2 549.7826538085938 MULTI HCD FTMS 0 0 0 8771 220485.515625 0.5047657206647892 3 -0.08237075805664062 1 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 184.3555567057281 7.78523872066095E-13 2 {M(Oxidation (M))|F}PTVQHQE{I|L} 9 0 + 98.781 0 0 9.0001 9.0001 91.857 0 0 0 7.537583965124014 7.537583965124014 7.537583965124014 7.537583965124014 0 2.700061205686631 0 1.9361818737241734 1.336696871556164 + + {M(Oxidation (M))|F}PTVQHQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQHQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQHQ{I|L}E;{M(Oxidation (M))|F}PTV[AG]HQE{I|L};{M(Oxidation (M))|F}PTVQH[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TV[AG]HQE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQH[AG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TV[AG]HQ{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVQH[AG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TV[AG]H[AG]E{I|L} 9.0001;8.3133;8.2163;8.1611;7.9229;7.4744;7.4744;7.3773;7.3773;6.6394 +;+;-;-;-;-;-;-;-;- + 2195 + NaN NaN 158146.5 NaN 6242 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8773 45.325 NaN 311020 35 0 26747 0.262 + 23484 RLYKMLCHVF 10 63 437.23484766551707 1308.6827135967512 3 437.90313720703125 MULTI HCD FTMS 0 0 0 8771 76194.2890625 0.6560650167617345 -4 0.09535598754882812 2 Unmodified _RLYKMLCHVF_ ENSG00000011132|ENST00000316757|APBA3;ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENST00000590064.1_1_19:3753732-3753969:-|nuORF 3.5870582119611467 0.4563168352879256 2 V{M(Oxidation (M))|F} 2 8 28.271 0 0 2.1603 0 0 1044.5354631580296 0 1044.5354631580296 0 5.083559388717376 0 0 0 0.8807196863200843 0 0 0 + V{M(Oxidation (M))|F} 2.1603 + + 23 + NaN NaN 127658.5 NaN 6243 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8774 45.329 NaN 208330 35 0 15448 0.261 + 14070 KYVSINSTL 9 60 512.7870591051449 1023.5595652770897 2 512.7870483398438 MULTI HCD FTMS 0 0 0 8771 66500.265625 0.9652219842943407 1 -0.02640533447265625 3 Unmodified _KYVSINSTL_ ENSG00000108021|ENST00000695737|TASOR2 30.7034409873982 0.10802119112323902 2 S{I|L}NST{I|L} 6 3 43.849 0 0 4.284 0 0 390.22674993142607 0 390.22674993142607 0 32.43501263708417 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + S{I|L}NST{I|L} 4.284 + + 109 NaN NaN 123163.4 NaN 6244 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8775 45.332 NaN 98177 35 0 15210 0.261 + 24918 RYSEYAEEF 9 34 597.2593725232799 1192.5041921133597 2 597.259033203125 MULTI HCD FTMS 0 0 0 8771 43176.7890625 0.39631966635489146 5 -0.12505722045898438 4 Unmodified _RYSEYAEEF_ ENSG00000139505|ENST00000381801|MTMR6 18.373094154950223 0.20161688160436167 2 YAEE{M(Oxidation (M))|F} 5 4 41.938 0 0 3.5168 0 0 535.2394886701187 0 535.2394886701187 0 41.938200260161125 0 0 0 0.8494850021680094 0 0 0 + YAEE{M(Oxidation (M))|F} 3.5168 + + 34 NaN NaN 100032.6 NaN 6245 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8776 45.335 NaN 165670 35 0 37787 0.264 -1 0 36 416.2436918347977 1245.7092461045931 3 416.24365234375 MULTI HCD FTMS 0 0 0 8771 63854 0.046415415203857946 67 -1.4247856140136719 5 NaN NaN 2 {I|L} 1 -1 4.6041 0 0 0.3696 0 0 629.378570911037 500.22483240299067 1129.6034033140277 0 0 0 0 0 0 0 0 0 {I|L} 0.3696 - 2 + NaN NaN 121152.4 NaN 6246 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8777 45.339 NaN 77931 35 0 8725.3 0.261 + 23920 RTMILKRKGY 10 33 633.3819595584839 NaN 0 633.381591796875 PEAK HCD FTMS 0 0 0 8771 18787.55859375 0.4893377885289227 -1 0.019672393798828125 6 Unmodified _RTMILKRKGY_ REV__ENST00000459803.5_1_3:75472125-75472206:-|nuORF 5.731851221503515 0.33527861879838866 2 {I|L}T 2 -1 10.261 0 0 0.81129 0 0 668.3950093495865 379.19883142642817 1047.5938407760148 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}T 0.81129 - 6 + NaN NaN 95606.5 NaN 6247 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8778 45.342 NaN 42690 35 0 6408.8 0.261 -1 0 39 556.2941079331289 1110.5736629330577 2 556.2947998046875 MULTI HCD FTMS 0 0 0 8771 4537.67578125 0.01562796140817976 45 -1.1394195556640625 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90833.4 NaN 6248 2528 8771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8780 45.347 NaN 515470 35 0 56300 0.327 + 25196 SANLEEVTM 9 60 505.2289868809931 1008.4434208287862 2 505.2289123535156 MULTI HCD FTMS 0 0 0 8779 249439.296875 0.6849502530788001 7 -0.19235610961914062 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 106.94017166704063 0.003441928997083001 2 {I|L}EEVT{M(Oxidation (M))|F} 6 3 71.547 0 0 7.0948 0 0 272.1114674298844 0 272.1114674298844 0 52.139181237354386 0 0 0 2.274227503252014 0 1.1549471895720984 0 + {I|L}EEVT{M(Oxidation (M))|F} 7.0948 + + 260 NaN NaN 159072.6 NaN 6249 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8781 45.351 NaN 574660 35 0 50812 0.261 + 26364 SSNLELHSL 9 73 500.2589656350215 998.5033783368431 2 500.2588806152344 MULTI HCD FTMS 0 0 0 8779 225055.4375 0.8451734878055077 -1 0.02640533447265625 2 Unmodified _SSNLELHSL_ ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7 145.12958885780327 1.3974915176135797E-05 2 {[QV]|[N{I|L}]|[RA]|[KV]}Q{I|L}E{I|L}GG 8 6 81.279 0 0 8.1401 0 0 0 171.04081806919183 171.04081806919183 61.20801237763349 0 0 0 0 2.2302046884880937 1.3979400086720375 0.3807196863200844 0.3054621874040891 {[QV]|[N{I|L}]|[RA]|[KV]}Q{I|L}E{I|L}GG 8.1401 - 661 NaN NaN 172976 NaN 6250 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8782 45.355 NaN 218150 35 0 28406 0.261 + 28816 TTVEGLITR 9 52 495.2850391992948 988.5555254653896 2 495.2850646972656 MULTI HCD FTMS 0 0 0 8779 76382.6796875 0.6356124448933389 -3 0.079071044921875 3 Unmodified _TTVEGLITR_ ENSG00000109917|ENST00000227322|ZPR1 71.70789743142352 0.008535567138151097 2 {[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}TR 9 0 + 63.848 0 0 6.4587 6.4587 90.445 0 0 0 38.18636235841012 8.208253071758875 8.208253071758875 10.938265792396251 0 2.0994850021680094 0 0 0 + + {[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}TR;{[DS]|[MA]|[CV]|TT}VEG{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[VG]HHG{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6.4587;5.3522;1.1504 +;+;- + 272 + NaN NaN 124625.8 NaN 6251 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8783 45.358 NaN 412650 35 0 35354 0.261 + 35256 YVRELYTV 8 84 521.781918115416 1041.549283297632 2 521.7814331054688 MULTI HCD FTMS 0 0 0 8779 63727.94140625 0.6086960463670542 -2 0.046077728271484375 4 Unmodified _YVRELYTV_ ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911-3|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911|MCF2 14.838274106304384 0.4846187982323419 2 EVYVT 5 6 46.013 0 0 4.4178 0 0 432.24766738105626 0 432.24766738105626 0 25 0 0 0 0.4247425010840047 0 0.3807196863200844 0 EVYVT 4.4178 - 124 NaN NaN 163558.3 NaN 6252 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8784 45.362 NaN 203630 35 0 32277 0.261 -1 YPHNGMIDL 9 49 538.2473996886835 1074.4802464441668 2 538.2479248046875 MULTI HCD FTMS 0 0 0 8779 58825.41015625 0.8908058793535266 -3 0.079071044921875 5 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ ENSG00000069849|ENST00000286371|ATP1B3 14.838274106304384 0.23215694253501695 2 {I|L}D{I|L} 3 -1 30.005 0 0 2.7925 0 0 715.2760487287125 0 715.2760487287125 0 24.5205343810445 0 0 0 0.3807196863200844 0 0 0 {I|L}D{I|L} 2.7925 + + 34 NaN NaN 120751.5 NaN 6253 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8785 45.365 NaN 198910 35 0 11557 0.261 -1 LYWALAFM 8 52 515.7561307481836 1029.4977085631672 2 515.7568359375 MULTI HCD FTMS 0 0 0 8779 31732.6875 0.5084489379711884 -5 0.12176132202148438 6 Oxidation (M) _LYWALAFM(Oxidation (M))_ ENSG00000188883|ENST00000340940|KLRG2 6.354104778181461 0.5325651638111438 2 T{I|L} 2 -1 25.969 0 0 2.5225 0 0 797.35639439551 0 797.35639439551 0 11.365006360318688 0 0 0 0.5 0 0 0 T{I|L} 2.5225 - 27 NaN NaN 120218.9 NaN 6254 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8786 45.368 NaN 76249 35 0 9957.8 0.261 -1 MPEDGQVNI 9 31 509.7287759838778 1017.4429990345557 2 509.72900390625 MULTI HCD FTMS 0 0 0 8779 33518.64453125 0.6572435772674565 -7 0.15443801879882812 7 Oxidation (M) _M(Oxidation (M))PEDGQVNI_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 8.155526934196011 0.2891920862272901 2 VN{I|L} 3 -1 35.445 0 0 3.4838 0 0 673.2391834943375 0 673.2391834943375 0 29.503187623076954 0 0 0 0.9247425010840047 0 0 0 VN{I|L} 3.4838 + + 13 NaN NaN 100899.4 NaN 6255 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8787 45.372 NaN 102380 35 0 10743 0.261 + 30699 VPETRPNHTIY 11 45 442.8985914984149 1325.6739450954447 3 442.89788818359375 MULTI HCD FTMS 0 0 0 8779 19876.90625 0.7590181442831486 1 -0.032939910888671875 8 Unmodified _VPETRPNHTIY_ ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF;ENST00000599570.5_1_19:41257313-41263396:+|nuORF 1.214830529360525 0.41359283248740725 2 V 1 10 6.9897 0 0 0.52726 0 0 138.03308655109623 1085.5628147402197 1223.5959012913158 0 0 0 0 0 0 0 0 0 + V 0.52726 + + 5 + NaN NaN 110582.8 NaN 6256 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8788 45.375 NaN 109910 35 0 7590.1 0.261 -1 VYMELSQKL 9 62 563.7945817186175 1125.5746105040348 2 564.2955932617188 MULTI HCD FTMS 0 0 0 8779 27346.720703125 0.29623970890416756 -13 0.3326988220214844 9 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}[{I|L}P]{M(Oxidation (M))|F}D{I|L}{I|L} 7 -1 22.924 0 0 2.0367 0 0 262.1309986798844 0 262.1309986798844 0 7.439644787305397 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}[{I|L}P]{M(Oxidation (M))|F}D{I|L}{I|L} 2.0367 - 80 NaN NaN 109784.2 NaN 6257 2529 8779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8790 45.38 NaN 892730 35 0 209810 0.327 + 15529 LPDPGSPRL 9 58 476.2666239380118 950.5186949428236 2 476.2664794921875 MULTI HCD FTMS 0 0 0 8789 464073.4375 0.7689500821799268 1 -0.0230255126953125 1 Unmodified _LPDPGSPRL_ ENSG00000188522|ENST00000388995|FAM83G 67.83816525789305 0.009787749748478139 2 {I|L}PDPGS 6 3 87.797 0 0 9.2367 0 0 0 381.22543564749117 381.22543564749117 33.80236061375784 0 0 0 0 1.566901560044258 1.5228787452803376 1.274227503252014 0 + {I|L}PDPGS 9.2367 + + 147 + NaN NaN 217391.8 NaN 6258 2530 8789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8791 45.384 NaN 420930 35 0 28856 0.261 + 4182 ETSPLTAEKL 10 67 544.795590657463 1087.5766283817259 2 544.79541015625 MULTI HCD FTMS 0 0 0 8789 220143.53125 0.9795753347730469 1 -0.0230255126953125 2 Unmodified _ETSPLTAEKL_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 61.08992128646608 0.03745793995309655 2 {[ET]|[MV]}SP{I|L}TAEK{I|L} 10 0 + 56.222 0 0 5.1694 5.1694 91.327 0 0 0 22.404630595263413 2.952490459521968 2.952490459521968 37.603356682352924 0 0.9489700043360187 0 0.7302046884880937 0.3054621874040891 + + {[ET]|[MV]}SP{I|L}TAEK{I|L};[DP]SP{I|L}[PG][RH]{I|L};{[ET]|[MV]}[KA]YA[RH]{I|L};[DP]SP[VP]A[RH]{I|L} 5.1694;1.7119;1.6196;1.55 +;-;-;- + 297 + NaN NaN 162829.8 NaN 6259 2530 8789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8792 45.388 NaN 181180 35 0 16821 0.261 + -1 MILAEAGLDL 10 64 531.2808756229659 1060.5471983127318 2 531.28125 MULTI HCD FTMS 0 0 0 8789 77811.5234375 0.5756821080494894 -8 0.1873779296875 3 Oxidation (M) _M(Oxidation (M))ILAEAGLDL_ REV__ENSG00000105676|ENST00000535612|ARMC6;REV__ENST00000535795.1_1_19:19166753-19168434:+|nuORF;REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6 25.399314129420986 0.2735354021946395 2 {M(Oxidation (M))|F}{I|L}{I|L}E 4 -1 42.523 0 0 4.0096 0 0 0 555.2788790338499 555.2788790338499 12.306679035102164 0 0 0 0 0.8807196863200843 2 0 0 {M(Oxidation (M))|F}{I|L}{I|L}E 4.0096 - 148 + NaN NaN 108460.2 NaN 6260 2530 8789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8793 45.391 NaN 111800 35 0 10755 0.261 + 9417 HPTWGDEQL 9 45 541.7487421774936 1081.482931421787 2 541.7487182617188 MULTI HCD FTMS 0 0 0 8789 37235.1953125 0.7245088998925877 -1 0.032939910888671875 4 Unmodified _HPTWGDEQL_ ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1 14.838274106304384 0.23215694253501695 2 EQ{I|L} 3 6 30.445 0 0 2.8151 0 0 693.2890293017178 0 693.2890293017178 0 27.971062485323515 0 0 0 0 0 0 0.4247425010840047 + EQ{I|L} 2.8151 + + 51 NaN NaN 100630.4 NaN 6261 2530 8789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8794 45.395 NaN 65812 35 0 4988.5 0.261 + 13935 KYQPRIAVF 9 39 561.3268619833847 1120.6391710335693 2 561.3261108398438 MULTI HCD FTMS 0 0 0 8789 30267.81640625 0.052821818374379395 19 -0.4815216064453125 5 Unmodified _KYQPRIAVF_ ENSG00000139372|ENST00000392872|TDG 3.944395688203298 0.32111559684428237 2 KYQ 3 6 26.198 0 0 2.3378 0 0 0 698.4012481181295 698.4012481181295 19.20818753952375 0 0 0 0 0 0 0 0 + KYQ 2.3378 + + 14 + NaN NaN 92549.3 NaN 6262 2530 8789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8795 45.398 NaN 41850 35 0 4370.1 0.261 + -1 CPEMECWW 8 32 607.2097033165516 NaN 0 607.3106689453125 PEAK HCD FTMS 0 0 0 8789 6082.65478515625 0.3740956378241349 3 -0.06571197509765625 6 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PEM(Oxidation (M))EC(Carbamidomethyl (C))WW_ REV__ENSG00000183662|ENST00000478136|TAFA1 0.7936320650641473 0.38822285293237185 2 E 1 -1 0.9691 0 0 0.079932 0 0 620.5618494047843 459.7628573053344 1080.3247067101188 0 0 0 0 0 0 0 0 0 E 0.079932 + + 3 + NaN NaN 92452.3 NaN 6263 2530 8789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8797 45.403 NaN 474620 35 0 64293 0.327 + 34386 YPEKIQASL 9 78 524.7871936135191 1047.559834293838 2 524.7872314453125 MULTI HCD FTMS 0 0 0 8796 237302.3125 0.7493251688841651 2 -0.04268646240234375 1 Unmodified _YPEKIQASL_ ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD;nc|ENSG00000122882|O95905-3|ECD 96.93554129104106 0.004344229100022454 2 YPE[K{I|L}]QAS{I|L} 9 0 + 86.022 0 0 8.2117 8.2117 92.351 0 0 0 11.104159301997 11.104159301997 11.104159301997 9.208187539523749 0 2.4291746928241125 1.6989700043360187 1.2856668758921828 0 + + YPE[K{I|L}]QAS{I|L};YPE[K{I|L}][AG]AS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]QAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}][AG]AS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A][VS]QAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{[QV]|[N{I|L}]|[RA]|[KV]}SAS{I|L};[EP]Y[K{I|L}]QAS{I|L};[EP]Y[K{I|L}][AG]AS{I|L};[EP]K[Y{I|L}]QAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[K{I|L}]{[DA]|[EG]}{[NV]|[RG]} 8.2117;7.3327;7.1517;6.2727;5.508;4.666;4.5139;3.6349;3.3694;2.9234 +;-;+;-;-;-;-;-;-;- + 389 + NaN NaN 157565.5 NaN 6264 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8798 45.407 NaN 565270 35 0 51390 0.262 + 12334 KMPKFKMPSF 10 90 419.555750436048 1255.6454219083441 3 419.5557861328125 MULTI HCD FTMS 0 0 0 8796 253351.234375 0.6001934820928195 14 -0.3532447814941406 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 50.13029200064056 0.07731568956748922 2 K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 57.507 0 0 4.5798 4.5798 83.822 0 0 0 35.75409255105575 11.406629545409984 11.406629545409984 5.105742396127923 0 1.0941876774005248 0 0.5752574989159953 0 + + K{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};KM[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};[KP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}A[KP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4.5798;4.1732;0.49495 +;-;- + 602 + NaN NaN 162587 NaN 6265 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8799 45.411 NaN 132390 35 0 23262 0.261 + 534 APDGKSYLL 9 33 482.2609670752899 962.5073812173798 2 482.2608337402344 MULTI HCD FTMS 0 0 0 8796 104750.8828125 1 0 0 3 Unmodified _APDGKSYLL_ ENSG00000153406|ENST00000283429|NMRAL1 19.361941925380144 0.1930734562688509 2 APD 3 6 30.93 0 0 3.2135 0 0 0 676.3668306940061 676.3668306940061 5.713337517843655 0 0 0 0 0.9247425010840047 0 0 0 + APD 3.2135 + + 14 + NaN NaN 99743.2 NaN 6266 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8800 45.414 NaN 124960 35 0 13132 0.261 + 32049 VYQHGLTGF 9 52 511.25862299782233 1020.5026930624447 2 511.25848388671875 MULTI HCD FTMS 0 0 0 8796 45663.3671875 0.7147262694272926 1 -0.032962799072265625 4 Unmodified _VYQHGLTGF_ ENSG00000030110|ENST00000374467|BAK1 52.268347100219714 0.028397529699942435 2 MTG{M(Oxidation (M))|F} 4 6 46.938 0 0 4.5995 0 0 566.3088281716228 0 566.3088281716228 0 26.062287920263927 0 0 0 1.5 0 0 0 MTG{M(Oxidation (M))|F} 4.5995 - 67 + NaN NaN 104076.9 NaN 6267 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8801 45.418 NaN 68435 35 0 7500.9 0.261 + 16286 LQPHTQYQF 9 42 581.2882143840081 1160.5618758348162 2 581.2880859375 MULTI HCD FTMS 0 0 0 8796 32431.849609375 0.3026247024437411 5 -0.13639068603515625 5 Unmodified _LQPHTQYQF_ ENSG00000085552|ENST00000368094|IGSF9;ENST00000476102.1_1_1:159898784-159904055:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;ENST00000496645.5_1_1:159899888-159901393:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9 5.296884461304476 0.3108627248283497 2 TYQ{M(Oxidation (M))|F} 4 5 33.047 0 0 2.8475 0 0 603.3017445294937 0 603.3017445294937 0 26.057743964882718 0 0 0 0.5 0 0 0 TYQ{M(Oxidation (M))|F} 2.8475 - 17 NaN NaN 91018.2 NaN 6268 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8802 45.421 NaN 82916 35 0 19314 0.264 + -1 GRRNHCFGWI 10 40 434.8821235406956 NaN 0 434.88214111328125 PEAK HCD FTMS 0 0 0 8796 40623.2421875 0.5256924604452383 38 -1.0034561157226562 6 Carbamidomethyl (C) _GRRNHC(Carbamidomethyl (C))FGWI_ REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96484.7 NaN 6269 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8803 45.424 NaN 295170 35 0 54552 0.261 + 3466 EGAGILLTR 9 36 465.274350257598 928.534147581996 2 465.2743835449219 MULTI HCD FTMS 0 0 0 8796 82840.3515625 0.4306974709498804 -4 0.10204315185546875 7 Unmodified _EGAGILLTR_ ENSG00000134375|ENST00000367287|TIMM17A;ENST00000482943.1_1_1:201932715-201938679:+|nuORF 28.494509381512117 0.11816142465008336 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 8 2 + 48.863 0 0 5.2624 5.2624 91.881 0 0 0 26.64442544444192 16.40978057358332 16.40978057358332 48.86291294060548 0 0.6747425010840047 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 5.2624 - 56 + NaN NaN 132946.6 NaN 6270 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8804 45.428 NaN 122610 35 0 12443 0.261 + 34593 YPNKYESVI 9 42 556.7846516707813 1111.5547504083625 2 556.7846069335938 MULTI HCD FTMS 0 0 0 8796 56492.41015625 0.31205678487577937 -5 0.13503646850585938 8 Unmodified _YPNKYESVI_ ENSG00000100280|ENST00000357586|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-4|AP1B1;ZNRF3-AP1B1|1|fusion;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|3|fusion;ZNRF3-AP1B1|4|fusion 19.361941925380144 0.1930734562688509 2 Y[YE]SV{I|L} 6 3 32.708 0 0 2.9426 0 0 339.1903553693375 0 339.1903553693375 0 16.510234424404686 0 0 0 0 0 0.7302046884880937 0 Y[YE]SV{I|L} 2.9426 - 24 NaN NaN 102268.7 NaN 6271 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8805 45.431 NaN 103780 35 0 15170 0.261 -1 RYALQMEQL 9 50 584.2949896319406 1166.575426330681 2 584.2943725585938 MULTI HCD FTMS 0 0 0 8796 38731.59765625 0.1558260131554497 -12 0.28952789306640625 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 29.84058131909904 0.11198220037953927 2 [Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F}EQ{I|L} 9 -1 + 69.983 0 0 5.999 5.999 88.549 0 0 0 14.71726222832956 42.53591878376909 14.71726222832956 9.208187539523749 0 0.6861818737241735 2 0 0.4247425010840047 [Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F}EQ{I|L};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}[AG]{M(Oxidation (M))|F}EQ{I|L};[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}Q{M(Oxidation (M))|F}E[AG]{I|L} 5.999;5.2097;5.2097 -;-;- 76 NaN NaN 105144.1 NaN 6272 2531 8796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8807 45.436 NaN 85713 35 0 6077.5 0.327 + 1588 AYVHMVTHF 9 49 552.7682830401682 1103.5220131471362 2 552.7682495117188 MULTI HCD FTMS 0 0 0 8806 36555.8515625 0.021321648390994517 38 -0.9931526184082031 1 Unmodified _AYVHMVTHF_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 37.97399986684836 0.07464525285885698 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHV{[ES]|[DT]|[{I|L}C]} 9 5 + 38.362 0 0 3.4764 3.4764 87.685 0 0 0 12.855443491087833 15.174837133936315 12.855443491087833 17.51348757971677 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WHV{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}V][NS]WHV{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}V]QQMH[PA]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]QQM[PA]H{M(Oxidation (M))|F};{[RE]|[WV]}{[QG]|[NA]}WNV{[ES]|[DT]|[{I|L}C]} 3.4764;1.8893;1.5044;1.072;0.77451 -;-;-;-;- 85 NaN NaN 99098.6 NaN 6273 2532 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8808 45.44 NaN 121580 35 0 8385.1 0.261 -1 VYMELSQKL 9 59 563.7945817186175 1125.5746105040348 2 563.7948608398438 MULTI HCD FTMS 0 0 0 8806 46665.74609375 0.27440395895546316 -6 0.167999267578125 2 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 18.373094154950223 0.20161688160436167 2 [YV]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}K{I|L} 9 -1 + 39.127 0 0 3.4762 3.4762 89.309 0 0 0 12.327067901930036 8.669687155616408 8.669687155616408 39.127262061223156 0 1.3494850021680094 2 0 0 [YV]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}K{I|L} 3.4762 + + 39 + NaN NaN 99432.3 NaN 6274 2532 8806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8810 45.445 NaN 446680 35 0 76101 0.327 + 15815 LPIATKEQL 9 69 506.8055038903851 1011.5964548475703 2 506.8053894042969 MULTI HCD FTMS 0 0 0 8809 202462.75 0.9178542173669001 1 -0.0393218994140625 1 Unmodified _LPIATKEQL_ ENSG00000145860|ENST00000424310|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 86.33184430468982 0.004622086694044132 2 {I|L}P{I|L}AT 5 4 78.175 0 0 7.7279 0 0 0 513.2681368463499 513.2681368463499 64.68047529268127 0 0 0 0 1.4247425010840047 1.6989700043360187 1.1989700043360187 0 + {I|L}P{I|L}AT 7.7279 + + 377 + NaN NaN 149004.8 NaN 6275 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8811 45.45 NaN 515260 35 0 98196 0.261 + 23699 RQNLRKYFF 9 59 424.57186453097495 1270.693764193125 3 424.57177734375 MULTI HCD FTMS 0 0 0 8809 116783.3515625 0.06887454004909632 -6 0.1447296142578125 2 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 24.38 0 0 1.9187 0 0 958.5464426780569 0 958.5464426780569 0 5.796896906561031 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9187 + + 18 + NaN NaN 164597.9 NaN 6276 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8812 45.453 NaN 209100 35 0 19492 0.261 + -1 MPEVKVETI 9 58 531.2808756229659 1060.5471983127318 2 531.281005859375 MULTI HCD FTMS 0 0 0 8809 100517.890625 0.7436732840498566 -5 0.12505722045898438 3 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 27.628801355627647 0.12213550946336599 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 37.652 0 0 3.5502 0 0 0 684.3166597955686 684.3166597955686 2.2062251842807967 0 0 0 0 0.5 2 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.5502 - 141 + NaN NaN 112136.1 NaN 6277 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8813 45.457 NaN 94658 35 0 9100.3 0.261 + 6875 FPTVQHQEL 9 54 549.782628470985 1097.5507040087698 2 549.7826538085938 MULTI HCD FTMS 0 0 0 8809 52819.44140625 0.12092151872635007 8 -0.235321044921875 4 Unmodified _FPTVQHQEL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 24.881564428377168 0.14538514251145815 2 QE{I|L} 3 6 25.177 0 0 2.294 0 0 709.3536854474625 0 709.3536854474625 0 -0.7918124604762511 -0.7918124604762511 0 0 0.3494850021680094 0 0 0 + QE{I|L} 2.294 + + 84 NaN NaN 99760.5 NaN 6278 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8814 45.46 NaN 138890 35 0 24982 0.261 + 9487 HPWEVMPEL 9 36 569.2735448636703 1136.5325367941405 2 569.2738647460938 MULTI HCD FTMS 0 0 0 8809 48132.62109375 0.13985407856611612 42 -1.0328025817871094 5 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 7.289230182591677 0.29575926068275815 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3286390919134 752.3286390919134 24.20818753952375 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 12 + NaN NaN 118864.1 NaN 6279 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8815 45.463 NaN 90368 35 0 21649 0.261 -1 MHCDGGISMIL 11 32 617.7667963563049 1233.5190397794097 2 617.767333984375 MULTI HCD FTMS 0 0 0 8809 36769.4921875 0.31838098985103286 11 -0.2975883483886719 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MHCDGGISM(Oxidation (M))IL_ nc|ENSG00000154723|P18859-2|ATP5PF 5.296884461304476 0.39569033063702824 2 A[YT]{M(Oxidation (M))|F}{I|L}{I|L} 6 -1 27.708 0 0 2.2463 0 0 507.157518455275 0 507.157518455275 0 27.708122007288623 0 0 0 0 0 0.3807196863200844 0 A[YT]{M(Oxidation (M))|F}{I|L}{I|L} 2.2463 - 8 NaN NaN 103002.9 NaN 6280 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8816 45.467 NaN 108950 35 0 6278.6 0.261 + -1 KCIDRYTQI 9 36 598.8065603740284 1195.5985678148568 2 599.2919311523438 MULTI HCD FTMS 0 0 0 8809 14188.1328125 0.5849725295011826 -1 0.009723663330078125 7 Carbamidomethyl (C) _KC(Carbamidomethyl (C))IDRYTQI_ REV__ENSG00000153339|ENST00000283351|TRAPPC8;REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 5.731851221503515 0.3075653528928475 2 {M(Oxidation (M))|F}TQ{I|L} 4 -1 28.928 0 0 2.4195 0 0 688.3342152326187 0 688.3342152326187 0 21.938200260161125 0 0 0 0 0 0 0 {M(Oxidation (M))|F}TQ{I|L} 2.4195 - 23 NaN NaN 100333 NaN 6281 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8817 45.47 NaN 54815 35 0 12460 0.262 + 16615 LVTSIQGHL 9 25 484.28241216994536 966.5502714066907 2 484.2822265625 MULTI HCD FTMS 0 0 0 8809 26595.6015625 0.8700452135158657 -1 0.009723663330078125 8 Unmodified _LVTSIQGHL_ ENSG00000117091|ENST00000368046|CD48;nc|ENSG00000117091|P09326-2|CD48 13.90604991867851 0.24021115267848145 2 [{I|L}V]TY 4 6 35.93 0 0 3.7173 0 0 0 487.2595614068969 487.2595614068969 35.929862658764264 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [{I|L}V]TY 3.7173 - 7 + NaN NaN 87808.9 NaN 6282 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8818 45.473 NaN 57083 35 0 4917.2 0.261 + 29319 TYNLLEFQWH 10 35 450.88832311706716 1349.6431399514015 3 450.8877868652344 MULTI HCD FTMS 0 0 0 8809 10686.544921875 0.2783950980987762 5 -0.1564483642578125 9 Unmodified _TYNLLEFQWH_ REV__ENSG00000120662|ENST00000379480|MTRF1;REV__nc|ENSG00000120662|O75570-2|MTRF1 1.7422754331352037 0.46608156381052757 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 95837.1 NaN 6283 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8819 45.477 NaN 88464 35 0 10844 0.261 -1 PQKLVMML 8 37 488.2699309307923 NaN 0 488.2701416015625 PEAK HCD FTMS 0 0 0 8809 17113.345703125 0.5464351167493956 -2 0.04268646240234375 10 Oxidation (M) _PQKLVM(Oxidation (M))ML_ ENST00000511127.1_1_4:145768248-145768308:+|nuORF 2.302733041254933 0.38822285293237185 2 Y 1 -1 5.4846 0 0 0.56279 0 0 258.16454340279716 550.2709444635374 808.4354878663346 0 0 0 0 0 0 0 0 0 Y 0.56279 - 1 + NaN NaN 92485 NaN 6284 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8820 45.48 NaN 78684 35 0 9116.3 0.261 + -1 VIIDCLVTAM 10 48 547.2857067476511 1092.5568605621022 2 547.2868041992188 MULTI HCD FTMS 0 0 0 8809 18445.138671875 0.7425453647678404 -1 0.009723663330078125 11 Oxidation (M) _VIIDCLVTAM(Oxidation (M))_ REV__ENSG00000135124|ENST00000337233|P2RX4;REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF;REV__ENST00000543318.5_1_12:121659934-121671349:+|nuORF;REV__nc|ENSG00000135124|Q99571-2|P2RX4;REV__nc|ENSG00000135124|Q99571-3|P2RX4;REV__P2RX4|p.M361Ifs*13|1|0.33|ENSG00000135124|chr12:121233033-121233034|-/T|frameshift_variant;REV__PTPN1-P2RX4|1|fusion 13.042465956692817 0.38911719078024076 2 VT{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 31.198 0 0 2.8555 0 0 656.360643455275 0 656.360643455275 0 15.713337517843655 0 0 0 1.5 0 0 0 VT{[MS]|[{M(Oxidation (M))|F}A]} 2.8555 + + 11 NaN NaN 96719.3 NaN 6285 2533 8809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8822 45.485 NaN 485530 35 0 51726 0.327 + 13167 KYLSGIAHF 9 75 518.2847361831803 1034.5549194331604 2 518.2847290039062 MULTI HCD FTMS 0 0 0 8821 199301.0625 0.5309303844388011 4 -0.11712646484375 1 Unmodified _KYLSGIAHF_ ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF 131.26759243768294 0.0005280990274065272 2 KY{I|L}SG{I|L}AH{M(Oxidation (M))|F} 9 0 + 67.762 0 0 6.5499 6.5499 87.009 0 0 0 5.097046968434142 5.097046968434142 5.097046968434142 5.097046968434142 0 2.278659694992122 0 0.6382104921644451 0 + + KY{I|L}SG{I|L}AH{M(Oxidation (M))|F};[YK]{I|L}SG{I|L}AH{M(Oxidation (M))|F};[YK]{I|L}S[Q{I|L}]H{M(Oxidation (M))|F};KY{I|L}S[Q{I|L}]H{M(Oxidation (M))|F};KY{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}QQ;{M(Oxidation (M))|F}[TA][KT]{I|L}AH{M(Oxidation (M))|F} 6.5499;6.0572;5.0273;4.6673;3.2871;1.9715 +;+;-;-;-;- + 256 + NaN NaN 161866.6 NaN 6286 2534 8821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8823 45.489 NaN 218120 35 0 18914 0.262 -1 SMLLLCEAILF 11 59 437.23484766551707 1308.6827135967512 3 437.9031066894531 MULTI HCD FTMS 0 0 0 8821 75279.1171875 0.6481850003077554 2 -0.05438232421875 2 Carbamidomethyl (C) _SMLLLC(Carbamidomethyl (C))EAILF_ ENST00000260665.11_1_2:44115434-44115623:-|nuORF 4.715918219556657 0.3982382512160552 2 V{M(Oxidation (M))|F} 2 -1 27.078 0 0 2.0691 0 0 1044.5332980295125 0 1044.5332980295125 0 3.8907562519182193 0 0 0 0.8494850021680094 0 0 0 V{M(Oxidation (M))|F} 2.0691 - 33 NaN NaN 124788.6 NaN 6287 2534 8821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8824 45.493 NaN 207760 35 0 33812 0.261 + 5617 FLYIRKRRF 9 56 433.5994048491334 1297.7763851476002 3 433.5993957519531 MULTI HCD FTMS 0 0 0 8821 42499.5390625 0.6075565441362228 12 -0.2975273132324219 3 Unmodified _FLYIRKRRF_ REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.0398 0 0 1132.6974952323642 0 1132.6974952323642 0 13.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0398 + + 3 + NaN NaN 112933.1 NaN 6288 2534 8821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8825 45.496 NaN 187680 35 0 39974 0.261 + 17434 LYRWLPSRR 9 51 416.2436918347977 1245.7092461045931 3 416.2439270019531 MULTI HCD FTMS 0 0 0 8821 44230.46875 0.03215108797714338 73 -1.5698432922363281 4 Unmodified _LYRWLPSRR_ ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1 0.9622753412299311 0.3437222896773173 2 Y 1 8 5.4846 0 0 0.44028 0 0 115.17581399019203 964.4485669059575 1079.6243808961494 0 0 0 0 0 0 0 0 0 + Y 0.44028 + + 3 + NaN NaN 114712.5 NaN 6289 2534 8821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8826 45.5 NaN 34677 35 0 3580.2 0.261 + -1 ASSEEPDCLEK 11 29 632.771068145006 NaN 0 632.7953491210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _ASSEEPDC(Carbamidomethyl (C))LEK_ REV__COL15A1|p.E232K|1|0.24|ENSG00000204291|chr9:98987339-98987339|G/A|missense_variant 2.0860074813731053 0.3362027409827022 2 EE 2 -1 10.969 0 0 0.86813 0 0 245.09247701091186 757.3334444635374 1002.4259214744493 0 0 0 0 0 0 0 0 0 EE 0.86813 + + 5 + NaN NaN 102134.9 NaN 6290 2534 8821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8828 45.505 NaN 334120 35 0 36734 0.327 + 25197 SANLEEVTM 9 54 505.2289868809931 1008.4434208287862 2 505.2289733886719 MULTI HCD FTMS 0 0 0 8827 122688.046875 0.3368964305527488 13 -0.3371086120605469 1 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 103.35351024395868 0.004027461563756449 2 EEVT{M(Oxidation (M))|F} 5 4 66.568 0 0 6.6011 0 0 385.1961259484252 0 385.1961259484252 0 52.5404627391503 0 0 0 1.9247425010840047 0 1.086696871556164 0 + EEVT{M(Oxidation (M))|F} 6.6011 + + 121 NaN NaN 143778.7 NaN 6291 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8829 45.509 NaN 602200 35 0 62522 0.261 + 7297 FTPDHVVYA 9 84 524.758668703105 1047.5027844730098 2 524.758544921875 MULTI HCD FTMS 0 0 0 8827 142664.765625 0.47299058602884747 -2 0.059040069580078125 2 Unmodified _FTPDHVVYA_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 42.09456458481378 0.05572955244001856 2 VYA 3 6 27.664 0 0 2.6409 0 0 696.325118783162 0 696.325118783162 0 8.199849938126889 0 0 0 0.9247425010840047 0 0 0 + VYA 2.6409 + + 261 NaN NaN 178563.9 NaN 6292 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8830 45.513 NaN 205370 35 0 12425 0.261 + 26365 SSNLELHSL 9 71 500.2589656350215 998.5033783368431 2 500.259033203125 MULTI HCD FTMS 0 0 0 8827 68634.5625 0.2577503268372714 5 -0.1500091552734375 3 Unmodified _SSNLELHSL_ ENSG00000136930|ENST00000259457|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7 34.221707139014875 0.09187037853496335 2 {[CA]|SS}GG{I|L}E{I|L}H{[TV]|[{I|L}S]} 10 2 + 62.299 0 0 6.2392 6.2392 87.02 0 0 0 45.30902815397354 4.444605153988661 4.444605153988661 6.5321251377534395 0 2.166386562212267 0 0 0 {[CA]|SS}GG{I|L}E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}E{I|L}H{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}[PG]QP{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}[PG]QP{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}[PG][AG]P{[TV]|[{I|L}S]};{[CA]|SS}N{I|L}[PG][AG]P{[TV]|[{I|L}S]};[KA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PG]{I|L}GVN;{[CA]|SS}N{I|L}E{[HG]|PP}G[KA];{[CA]|SS}[{I|L}T]A[PS]H{[TV]|[{I|L}S]};{[CA]|SS}GG{I|L}E{[HG]|PP}G[KA] 6.2392;5.585;4.1915;3.533;3.2773;2.6152;2.1872;1.9417;1.2425;1.0239 -;+;-;-;-;-;-;-;-;- + 506 + NaN NaN 122114.4 NaN 6293 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8831 45.516 NaN 148930 35 0 17606 0.261 + 28817 TTVEGLITR 9 47 495.2850391992948 988.5555254653896 2 495.2843017578125 MULTI HCD FTMS 0 0 0 8827 66273.578125 0.5514903535225746 3 -0.09740829467773438 4 Unmodified _TTVEGLITR_ ENSG00000109917|ENST00000227322|ZPR1 28.494509381512117 0.11816142465008336 2 {[DS]|[MA]|[CV]|TT}VE{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 0 + 36.628 0 0 3.7053 3.7053 89.085 0 0 0 26.17091242345041 5.6424927368726046 5.6424927368726046 32.21848749616357 0 1.3494850021680094 0 0 0 + + {[DS]|[MA]|[CV]|TT}VE{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[DS]|[MA]|[CV]|TT}{[QN]|[E{I|L}]|[KN]}[R{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.7053;0.44611 +;- + 53 + NaN NaN 106344 NaN 6294 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8832 45.519 NaN 288500 35 0 37955 0.261 + 7231 FSSNFIKIS 9 62 521.781918115416 1041.549283297632 2 521.7820434570312 MULTI HCD FTMS 0 0 0 8827 50899.99609375 0.4861702057007849 4 -0.12700653076171875 5 Unmodified _FSSNFIKIS_ ENST00000557320.5_1_14:96999700-97000015:+|nuORF 13.042465956692817 0.2476723265019929 2 [YR]{I|L}EVYVT 8 9 + 41.719 0 0 4.0055 4.0055 86.53 0 0 0 5.973732280301789 23.135635547181508 5.973732280301789 9.829795016284915 0 0.3807196863200844 0 0 0.4247425010840047 [YR]{I|L}EVYVT;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEVYVT;[YR]{I|L}EVVYT;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEVVYT 4.0055;3.0617;2.7741;2.2381 -;-;-;- 97 NaN NaN 128411.1 NaN 6295 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8833 45.523 NaN 199140 35 0 32734 0.261 -1 YPHNGMIDL 9 50 538.2473996886835 1074.4802464441668 2 538.2471313476562 MULTI HCD FTMS 0 0 0 8827 36236.48828125 0.5487369611588346 3 -0.09740829467773438 6 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ ENSG00000069849|ENST00000286371|ATP1B3 10.073929032068715 0.27331982688540024 2 {I|L}D{I|L} 3 -1 30.005 0 0 2.7925 0 0 715.2742787091812 0 715.2742787091812 0 23.015384402724592 0 0 0 0.3807196863200844 0 0 0 {I|L}D{I|L} 2.7925 + + 18 NaN NaN 117388.2 NaN 6296 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8834 45.531 NaN 85845 35 0 9121 0.261 -1 MPEDGQVNI 9 35 509.7287759838778 1017.4429990345557 2 509.72882080078125 MULTI HCD FTMS 0 0 0 8827 37866.16796875 0.742491113266492 -1 0.019718170166015625 7 Oxidation (M) _M(Oxidation (M))PEDGQVNI_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 12.240655878213236 0.2545997876781172 2 VN{I|L} 3 -1 33.188 0 0 3.2619 0 0 673.2369789295132 0 673.2369789295132 0 16.197887582883936 0 0 0 1 0 0 0 VN{I|L} 3.2619 + + 27 NaN NaN 101614.7 NaN 6297 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8835 45.534 NaN 72981 35 0 6319.2 0.261 + 10741 IRIMSYVMLPC 11 36 442.5631052396836 NaN 0 442.5629577636719 PEAK HCD FTMS 0 0 0 8827 14735.439453125 0.45516040651141254 3 -0.09740829467773438 8 Unmodified _IRIMSYVMLPC_ ENSG00000100344|ENST00000216180|PNPLA3;ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3 2.843284757254958 0.33405456343542356 2 V 1 10 4.6041 0 0 0.52135 0 0 545.959937430736 235.0651796930297 781.0251171237657 0 0 0 0 0 0 0 0 0 + V 0.52135 + + 3 + NaN NaN 89231.4 NaN 6298 2535 8827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8837 45.539 NaN 173690 35 0 34608 0.327 + 15530 LPDPGSPRL 9 52 476.2666239380118 950.5186949428236 2 476.26641845703125 MULTI HCD FTMS 0 0 0 8836 82734.65625 0.1370878304633962 7 -0.1709136962890625 1 Unmodified _LPDPGSPRL_ ENSG00000188522|ENST00000388995|FAM83G 26.268140514670165 0.13340543277302316 2 {I|L}PDP 4 5 54.725 0 0 5.7574 0 0 0 525.2788790338499 525.2788790338499 30.28782221775522 0 0 0 0 0.8807196863200843 1.3979400086720375 0 0 + {I|L}PDP 5.7574 + + 35 + NaN NaN 112522.6 NaN 6299 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8838 45.544 NaN 198500 35 0 37543 0.261 + 28808 TTSVITIVK 9 39 481.30022810760414 960.5859032820083 2 481.2999572753906 MULTI HCD FTMS 0 0 0 8836 80817.78125 0.9225676204385317 -1 0.034664154052734375 2 Unmodified _TTSVITIVK_ ENSG00000198517|ENST00000343242|MAFK 26.268140514670165 0.13340543277302316 2 T{I|L}VS[PS] 6 7 30.507 0 0 3.1759 0 0 358.25776869941564 0 358.25776869941564 0 18.824543621168388 0 0 0 0.5 0 0.4247425010840047 0 T{I|L}VS[PS] 3.1759 - 27 NaN NaN 127976.6 NaN 6300 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8839 45.547 NaN 268100 35 0 38153 0.261 + 23612 RPITDSPVL 9 60 499.28751388891715 996.5604748446343 2 499.2874755859375 MULTI HCD FTMS 0 0 0 8836 58807.22265625 0.253600879543057 6 -0.15790176391601562 3 Unmodified _RPITDSPVL_ ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B 13.042465956692817 0.2476723265019929 2 APD 3 7 20.005 0 0 2.0074 0 0 131.13320679666032 579.2890857550268 710.4222925516872 0 0 0 0 0 0 0 0.3807196863200844 0 APD 2.0074 - 57 + NaN NaN 135887.7 NaN 6301 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8840 45.551 NaN 109960 35 0 5612.9 0.261 + 807 AVFHTVASRT 10 56 544.795590657463 1087.5766283817259 2 544.7957153320312 MULTI HCD FTMS 0 0 0 8836 21265.615234375 0.09462586542554927 7 -0.1709136962890625 4 Unmodified _AVFHTVASRT_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant 3.2813086475875832 0.45793521633868084 2 KSG 3 9 10.802 0 0 0.99322 0 0 149.1120420553571 663.2908419244749 812.402883979832 0 0 0 0 0 0 0 0 0 KSG 0.99322 - 37 + NaN NaN 97040 NaN 6302 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8841 45.554 NaN 111580 35 0 10360 0.261 + 30037 VFQDRQYQI 9 51 598.8065603740284 1195.5985678148568 2 599.292236328125 MULTI HCD FTMS 0 0 0 8836 13613.8154296875 0.5612935932662229 1 -0.02972412109375 5 Unmodified _VFQDRQYQI_ ENSG00000139842|ENST00000375440|CUL4A;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000158290|Q13620|CUL4B 16.149105407346934 0.22083165093524068 2 [{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F}[HK]YQ{I|L} 9 4 + 51.929 0 0 4.3433 4.3433 86.01 0 0 0 5.6424927368725974 35.7306842758112 5.6424927368725974 9.208187539523749 0 0.8807196863200843 0 0 0.4247425010840047 [{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F}[HK]YQ{I|L};[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F}[HK]Y[AG]{I|L};[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F}Y[HK]Q{I|L};[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F}Y[HK][AG]{I|L};[YK]{[{M(Oxidation (M))|F}H]|[RQ]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TQ{I|L};[YK]{[{M(Oxidation (M))|F}H]|[RQ]}[TP]YQ{I|L};[YK]{[{M(Oxidation (M))|F}H]|[RQ]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ND{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]Q{I|L};[{M(Oxidation (M))|F}V]D[{I|L}T]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WR] 4.3433;3.5731;3.5452;2.775;1.6025;1.6025;1.1404;0.51857;0.22997 -;-;-;-;-;-;-;-;- 122 NaN NaN 106944.9 NaN 6303 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8842 45.557 NaN 46783 35 0 5900.2 0.264 + 20421 PAAWMEIP 8 29 457.72708360354017 913.4396142738804 2 457.7267761230469 MULTI HCD FTMS 0 0 0 8836 15528.7783203125 0.5903618702748032 2 -0.062744140625 6 Unmodified _PAAWMEIP_ ENST00000585803.1_1_18:57863810-57864818:+|nuORF 5.760428011301431 0.5334459684533844 2 M 1 7 1.5938 0 0 0.17448 0 0 426.4457310725116 352.93235193424067 779.3780830067523 0 0 0 0 0 0 0 0 0 + M 0.17448 + + 10 + NaN NaN 101675.2 NaN 6304 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8843 45.561 NaN 38516 35 0 3235.7 0.261 + 25364 SEDIELGHNTS 11 37 601.2691650390625 NaN 0 601.2691650390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SEDIELGHNTS_ REV__ENSG00000081800|ENST00000194130|SLC13A1 1.0714618166137932 0.3390807148598227 2 Q 1 -1 6.9897 0 0 0.58271 0 0 275.1791441388687 793.2575777643186 1068.4367219031874 0 0 0 0 0 0 0 0 0 Q 0.58271 - 4 + NaN NaN 108934.1 NaN 6305 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8844 45.564 NaN 39460 35 0 6060.5 0.264 -1 RYQQWMERF 9 33 453.880101238919 NaN 0 453.8802795410156 PEAK HCD FTMS 0 0 0 8836 16846.697265625 0.7239557900203905 8 -0.20388412475585938 8 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 2.282774691075616 0.2841848346883669 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92030.5 NaN 6306 2536 8836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8846 45.569 NaN 313680 35 0 27437 0.327 + -1 LMQLGKMFI 9 70 556.7969496551699 NaN 0 556.7847290039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _LM(Oxidation (M))QLGKM(Oxidation (M))FI_ REV__ENSG00000050426|ENST00000262055|LETMD1;REV__ENST00000547877.5_1_12:51442859-51453215:+|nuORF;REV__ENST00000552430.5_1_12:51442859-51449674:+|nuORF;REV__nc|ENSG00000050426|Q6P1Q0-2|LETMD1;REV__nc|ENSG00000050426|Q6P1Q0-7|LETMD1 8.593279151180031 0.2536050107310812 2 VS[YE]Y 5 -1 19.521 0 0 1.7561 0 0 131.11904020852643 336.1672457330688 467.2862859415952 0 0 0 0 0 0 0 0.7302046884880937 0 VS[YE]Y 1.7561 - 77 + NaN NaN 143122 NaN 6307 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8847 45.574 NaN 236250 35 0 41556 0.262 + 3467 EGAGILLTR 9 36 465.274350257598 928.534147581996 2 465.2742614746094 MULTI HCD FTMS 0 0 0 8845 88620.9375 0.46075146875324946 2 -0.06261825561523438 2 Unmodified _EGAGILLTR_ ENSG00000134375|ENST00000367287|TIMM17A;ENST00000482943.1_1_1:201932715-201938679:+|nuORF 18.373094154950223 0.20161688160436167 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 8 2 + 40.597 0 0 4.3721 4.3721 90.312 0 0 0 13.685625271001172 14.904630595263413 13.685625271001172 40.59685037172876 0 0.3252574989159953 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}{I|L}TR 4.3721 - 48 + NaN NaN 127076.6 NaN 6308 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8848 45.577 NaN 295790 35 0 27789 0.261 + 12335 KMPKFKMPSF 10 69 419.555750436048 1255.6454219083441 3 419.5559387207031 MULTI HCD FTMS 0 0 0 8845 142461.953125 0.33749484553636405 20 -0.4963340759277344 3 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 57.107585691075435 0.05194081441006845 2 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 2 + 41.607 0 0 3.3136 3.3136 89.239 0 0 0 38.5081775995951 16.53212513775344 16.53212513775344 41.60712139103707 0 0.75 0 0.6694451763165201 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Q{I|L}]{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 3.3136 - 82 + NaN NaN 120689.6 NaN 6309 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8849 45.58 NaN 257480 35 0 28754 0.261 + -1 MPEVKVETI 9 80 531.2808756229659 1060.5471983127318 2 531.2808837890625 MULTI HCD FTMS 0 0 0 8845 103216.015625 0.7636351382735261 -1 0.02972412109375 4 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 36.506200033944 0.08138327636155518 2 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 9 -1 + 43.477 0 0 4.0995 4.0995 87.19 0 0 0 13.260168315118868 4.051980775595119 4.051980775595119 12.116231051101995 0 2.0138793319624577 0 0.3494850021680094 0 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{M(Oxidation (M))|F}PV{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}T{I|L};{M(Oxidation (M))|F}PVEV[KT]E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]VE[DP]{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VEVPE;{M(Oxidation (M))|F}{I|L}[DP]V[KT]E{I|L};{M(Oxidation (M))|F}{I|L}[DP]V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VE[DP]{I|L};[{I|L}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[DP]E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]V[DP]E{I|L} 4.0995;2.957;2.9478;2.4253;2.3303;2.219;2.1438;2.0957;1.7409;1.4114 -;-;-;-;-;-;-;-;-;- 343 + NaN NaN 121089.4 NaN 6310 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8850 45.584 NaN 201670 35 0 33652 0.261 -1 YPHNGMIDL 9 53 538.2473996886835 1074.4802464441668 2 538.24755859375 MULTI HCD FTMS 0 0 0 8845 37821.7421875 0.5727428031275473 5 -0.12817764282226562 5 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ ENSG00000069849|ENST00000286371|ATP1B3 19.256988751693697 0.19398022840297344 2 {I|L}D{I|L} 3 -1 33.812 0 0 3.1468 0 0 715.2726307599625 0 715.2726307599625 0 33.81228130928562 0 0 0 0.7614393726401688 0 0 0 {I|L}D{I|L} 3.1468 + + 24 NaN NaN 114324.3 NaN 6311 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8851 45.587 NaN 157490 35 0 9973.7 0.261 + 21961 QELNDRFANY 10 48 635.2968591931756 1268.579165453151 2 635.2974243164062 MULTI HCD FTMS 0 0 0 8845 66690.4765625 0.6620161384823833 -2 0.06438827514648438 6 Unmodified _QELNDRFANY_ ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 23.789781309258295 0.28859042913526417 2 NY 2 8 25.573 0 0 2.0159 0 0 973.4656849591812 0 973.4656849591812 0 6.365006360318688 0 0 0 0.5 0 0 0.5 + NY 2.0159 + + 24 NaN NaN 122036.2 NaN 6312 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8852 45.59 NaN 50448 35 0 4690.4 0.264 -1 0 30 467.473390745308 2332.33057139354 5 467.6736755371094 MULTI HCD FTMS 0 0 0 8845 14915.5615234375 0.579035304031602 1 -0.03302001953125 7 NaN NaN 2 S 1 -1 6.9897 0 0 0.29969 0 0 1529.9322692468588 712.3411348932249 2242.2734041400836 0 0 0 0 0 0 0 0 0 S 0.29969 - 2 + NaN NaN 91875.8 NaN 6313 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8853 45.594 NaN 26154 35 0 5592.6 0.261 + 20741 PGAKHQHH 8 24 456.23334698116093 NaN 0 456.2330322265625 PEAK HCD FTMS 0 0 0 8845 13073.5224609375 0.5250263193851704 1 -0.03302001953125 8 Unmodified _PGAKHQHH_ chr11:65897003-65900241|125|15.44|0.25|5.96|-|2|None,FOSL1|1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87334 NaN 6314 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8854 45.597 NaN 124370 35 0 6159.1 0.261 + -1 DLNNNNQLM 9 67 546.2428296787924 1090.4711064243847 2 546.2415161132812 MULTI HCD FTMS 0 0 0 8845 26458.6875 1 0 0 9 Oxidation (M) _DLNNNNQLM(Oxidation (M))_ REV__ENSG00000055208|ENST00000637181|TAB2;REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}GNS{M(Oxidation (M))|F} 5 -1 21.402 0 0 1.9627 0 0 520.2286244123062 0 520.2286244123062 0 3.443350238481031 0 0 0 0 0 0 0 {M(Oxidation (M))|F}GNS{M(Oxidation (M))|F} 1.9627 - 101 NaN NaN 112586.5 NaN 6315 2537 8845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8856 45.602 NaN 3498800 35 0 742350 0.327 + 25017 RYVRRLDFF 9 107 424.57186453097495 1270.693764193125 3 424.5719909667969 MULTI HCD FTMS 0 0 0 8855 1640392.375 0.9674432940700843 -1 0.03302001953125 1 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 49.52724829834842 0.03223213920720493 2 PMR{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 6 41.273 0 0 3.2481 0 0 574.3331165998062 0 574.3331165998062 0 14.629843661361406 0 0 0 0.8252574989159953 0 0 0.8494850021680094 PMR{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2481 - 429 NaN NaN 611487.3 NaN 6316 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8857 45.607 NaN 657490 35 0 116000 0.261 + 23575 RPDTLDPAL 9 60 499.26958960916204 996.5246262851241 2 499.26934814453125 MULTI HCD FTMS 0 0 0 8855 347276.6875 0.3071199820473534 -6 0.16617202758789062 2 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 47.594388314883695 0.03493607795751234 2 [RP]D[{I|L}T]DPA{I|L} 9 0 + 62.457 0 0 6.2675 6.2675 92.047 0 0 0 5.6424927368725974 28.249256301612746 5.6424927368725974 21.937097451246288 0 2.110924374808178 0 0.8494850021680094 0 + + [RP]D[{I|L}T]DPA{I|L};[PA]{I|L}[VG]D[NG]AA{I|L};[RP]D[{I|L}T]D{I|L}[PA];[PA]{I|L}RD{[TV]|[{I|L}S]}[EP];[PA]{I|L}RD[{I|L}T][DP];[RP]D[{I|L}T]{[VA]|[{I|L}G]}[EP];[RP]D[{I|L}T][{I|L}A][DP] 6.2675;4.0662;3.0547;1.8011;1.5963;0.62666;0.42183 +;-;-;-;-;-;- + 336 NaN NaN 179294.2 NaN 6317 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8858 45.61 NaN 409840 35 0 75526 0.261 + 24102 RYALQMEQL 9 67 584.2949896319406 1166.575426330681 2 584.294921875 MULTI HCD FTMS 0 0 0 8855 185613.28125 0.7467643824711013 -5 0.1564483642578125 3 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 103.82355648334675 0.003950725192926219 2 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 87.357 0 0 7.4883 7.4883 91.185 0 0 0 4.6382467949933925 4.6382467949933925 4.6382467949933925 9.208187539523749 0 2.548455006504028 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L};[YR]YY[YV]Q{I|L} 7.4883;6.699;6.699;5.9134;4.8542;4.2574;4.0649;2.4981 +;-;-;-;-;-;-;- + 447 NaN NaN 153679.5 NaN 6318 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8859 45.613 NaN 276480 35 0 20988 0.261 + 31830 VYMELSQKL 9 62 563.7945817186175 1125.5746105040348 2 563.7941284179688 MULTI HCD FTMS 0 0 0 8855 170062.21875 1 0 0 4 Oxidation (M) _VYM(Oxidation (M))ELSQKL_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 96.93554129104106 0.004344229100022454 2 VY{M(Oxidation (M))|F}E{I|L}SQK{I|L} 9 0 + 98.331 0 0 8.736 8.736 89.141 0 0 0 1.6516033102399064 1.6516033102399064 1.6516033102399064 1.6516033102399064 0 3.079689690656103 2 0.2742275032520141 0.6989700043360187 + + VY{M(Oxidation (M))|F}E{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}E{I|L}SQK{I|L};VY{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}E{I|L}S[AG]K{I|L};[Y{M(Oxidation (M))|F}]VE{I|L}SQK{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]DQK{I|L};[Y{M(Oxidation (M))|F}]VE{I|L}S[AG]K{I|L};[YV]{M(Oxidation (M))|F}[{I|L}T]D[AG]K{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]DQK{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]D[AG]K{I|L} 8.736;8.5893;7.918;7.7712;6.1711;5.8798;5.353;5.0617;3.4616;2.6435 +;+;-;-;-;-;-;-;-;- + 349 + NaN NaN 123117.6 NaN 6319 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8860 45.617 NaN 161070 35 0 12338 0.261 + 10493 IPDTENQTL 9 38 515.7561307481836 1029.4977085631672 2 515.7556762695312 MULTI HCD FTMS 0 0 0 8855 51665.0546875 0.8278227990012741 4 -0.09515762329101562 5 Unmodified _IPDTENQTL_ ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217 9.38312468134398 0.279288223203164 2 T{I|L} 2 7 29.776 0 0 2.8923 0 0 797.3564320294937 0 797.3564320294937 0 24.291746928241125 0 0 0 0.5 0 0.3807196863200844 0 + T{I|L} 2.8923 + + 6 NaN NaN 116843.3 NaN 6320 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8861 45.62 NaN 143400 35 0 20813 0.261 + 9488 HPWEVMPEL 9 53 569.2735448636703 1136.5325367941405 2 569.2745971679688 MULTI HCD FTMS 0 0 0 8855 41257.85546875 0.11987876889059068 47 -0.9699058532714844 6 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 10.823927491677226 0.26684000660059787 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3263643854124 752.3263643854124 29.69273760456403 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 18 + NaN NaN 101237.9 NaN 6321 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8862 45.623 NaN 59917 35 0 6675.1 0.261 -1 QYNMNFEKL 9 35 601.779217512943 1201.5438820926859 2 601.7791748046875 MULTI HCD FTMS 0 0 0 8855 33820.6328125 0.6193016277936619 -3 0.09740829467773438 7 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-2|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 3.2813086475875832 0.32614229037259 2 E[K{I|L}] 3 -1 10.458 0 0 0.87034 0 0 813.3131214499109 0 813.3131214499109 0 3.4678748622465623 0 0 0 0 0 0 0 E[K{I|L}] 0.87034 + + 9 + NaN NaN 87219.3 NaN 6322 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8863 45.627 NaN 68255 35 0 5887.2 0.261 + 20714 PFTRYSTNI 9 47 549.7820486515097 1097.5495443698194 2 549.7823486328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _PFTRYSTNI_ ENSG00000186952|ENST00000455884|TMEM232 2.9952420565917617 0.3283108881486655 2 Q{I|L} 2 8 19.464 0 0 1.7734 0 0 838.4213124005875 0 838.4213124005875 0 19.463950151760656 0 0 0 0 0 0 0 Q{I|L} 1.7734 - 2 NaN NaN 116727.7 NaN 6323 2538 8855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8865 45.632 NaN 167910 35 0 15447 0.327 -1 MPDLPEKL 8 53 479.74950118057643 957.4844494279529 2 479.74932861328125 MULTI HCD FTMS 0 0 0 8864 73142.3125 0.28774079756269927 -30 0.7986068725585938 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 38.175570920033316 0.25436662042464897 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 -1 + 47.312 0 0 4.9413 4.9413 91.338 0 0 0 21.343115646969935 11.962724883926654 11.962724883926654 47.3122157770505 0 1.4916440611282626 0 0 0 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.9413 + + 39 + NaN NaN 108578.7 NaN 6324 2539 8864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8866 45.636 NaN 108090 35 0 8740.1 0.261 + 23954 RVFPDKGYSF 10 50 608.3116686830616 1214.6087844329231 2 608.3121337890625 MULTI HCD FTMS 0 0 0 8864 59503.77734375 0.834554167520416 1 -0.02300262451171875 2 Unmodified _RVFPDKGYSF_ ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1 20.580933911654288 0.31860490502175054 2 [HD]YGK[DP]{M(Oxidation (M))|F} 8 8 25.182 0 0 2.0733 0 0 0 252.14594446353752 252.14594446353752 14.213271985608529 0 0 0 0 0.8807196863200843 0 0 0 [HD]YGK[DP]{M(Oxidation (M))|F} 2.0733 - 90 + NaN NaN 107527.5 NaN 6325 2539 8864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8867 45.64 NaN 128010 35 0 22681 0.262 + 8808 HIQENEVL 8 35 491.2538258580118 980.4930987828236 2 491.2539978027344 MULTI HCD FTMS 0 0 0 8864 63364.03515625 1 0 0 3 Unmodified _HIQENEVL_ REV__tr|U7SSY7|U7SSY7_FUSNUHeptose(II)phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01643PE=4SV=1 10.823927491677226 0.514154816617796 2 V{I|L} 2 -1 20.969 0 0 2.1386 0 0 750.3249378888687 0 750.3249378888687 0 3.979400086720375 0 0 0 0 0 0 0 V{I|L} 2.1386 + + 6 NaN NaN 115560 NaN 6326 2539 8864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8868 45.643 NaN 211910 35 0 11657 0.261 + 4255 EVHGPDWHL 9 62 545.258945080966 1088.5033372287319 2 545.2594604492188 MULTI HCD FTMS 0 0 0 8864 36450.7421875 0.6239640596744422 -2 0.06261825561523438 4 Unmodified _EVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 48.345845343767074 0.03388484103555672 2 {NN|[MP]|[D{I|L}]|[EV]}HG[DP]WH{I|L} 9 0 {NN|[MP]|[D{I|L}]|[EV]} + + 27.535 1.7339 0.76013 2.5297 2.5297 59.914 0 0 0 0 5.54068199846057 0 0 0 1.1549471895720984 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}HG[DP]WH{I|L} 2.5297 + + 170 + NaN NaN 108703 NaN 6327 2539 8864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8869 45.646 NaN 144400 35 0 10216 0.262 + 17734 MDERFRPLTF 10 40 437.8886722491334 NaN 0 437.9033508300781 PEAK HCD FTMS 0 0 0 8864 4548.6064453125 0.45517548906142796 2 -0.049274444580078125 5 Unmodified _MDERFRPLTF_ CLCN6|p.E733D|1|0.09|ENSG00000011021|chr1:11837403-11837403|G/C|missense_variant 1.7422754331352037 0.33869314273211465 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102835.7 NaN 6328 2539 8864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8870 45.65 NaN 93250 35 0 9898.5 0.261 + 18013 MLKWGICL 8 42 482.2609670752899 962.5073812173798 2 482.2611999511719 MULTI HCD FTMS 0 0 0 8864 21215.259765625 0.2025306059100188 8 -0.18708038330078125 6 Unmodified _MLKWGICL_ ENST00000608354.1_1_22:30642479-30642794:+|nuORF 5.760428011301431 0.5334459684533844 2 N{I|L} 2 7 16.454 0 0 1.7095 0 0 717.3520474479692 0 717.3520474479692 0 16.453650195120844 0 0 0 0 0 0 0 N{I|L} 1.7095 - 9 NaN NaN 100464.3 NaN 6329 2539 8864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8872 45.655 NaN 527360 35 0 54377 0.327 + 7298 FTPDHVVYA 9 76 524.758668703105 1047.5027844730098 2 524.7586059570312 MULTI HCD FTMS 0 0 0 8871 159240.390625 0.5279453924815667 3 -0.055568695068359375 1 Unmodified _FTPDHVVYA_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 50.855029805455786 0.030374663808198754 2 DYA 3 6 28.773 0 0 2.7468 0 0 680.3768177716812 0 680.3768177716812 0 16.8348435778082 0 0 0 0.5 0 0.7742275032520141 0 DYA 2.7468 - 153 NaN NaN 166156.2 NaN 6330 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8873 45.659 NaN 233300 35 0 14178 0.261 -1 0 54 575.6618587327525 1723.9637467984576 3 575.9964599609375 MULTI HCD FTMS 0 0 0 8871 46288.46484375 0.5223514653492249 -1 0.02300262451171875 2 NaN NaN 2 QNNWT 5 -1 36.938 0 0 2.1426 0 0 0 1077.644933493658 1077.644933493658 11.721675119240516 0 0 0 0 0 0 0.5 0 QNNWT 2.1426 - 57 + NaN NaN 121501 NaN 6331 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8874 45.663 NaN 232790 35 0 21330 0.261 + 25198 SANLEEVTM 9 52 505.2289868809931 1008.4434208287862 2 505.2294616699219 MULTI HCD FTMS 0 0 0 8871 66068.765625 0.18142216684536858 18 -0.4304237365722656 3 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 79.59630418116434 0.005983006570063981 2 EEVT{M(Oxidation (M))|F} 5 4 65.375 0 0 6.4828 0 0 385.1953904075127 0 385.1953904075127 0 57.900990676322905 0 0 0 1.9247425010840047 0 1.055462187404089 0 + EEVT{M(Oxidation (M))|F} 6.4828 + + 138 NaN NaN 117990.3 NaN 6332 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8875 45.666 NaN 189860 35 0 29999 0.262 + 17435 LYRWLPSRR 9 48 416.2436918347977 1245.7092461045931 3 416.2436828613281 MULTI HCD FTMS 0 0 0 8871 46863.48046875 0.034065021828780004 79 -1.7084236145019531 4 Unmodified _LYRWLPSRR_ ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1 7.608950283845883 0.29333554423920943 2 R 1 8 13.979 0 0 1.1222 0 0 1071.5981906620134 0 1071.5981906620134 0 8.494850021680094 0 0 0 0 0 0 0 + R 1.1222 + + 8 + NaN NaN 113615.1 NaN 6333 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8876 45.669 NaN 83657 35 0 16988 0.261 + -1 SDSEPEAPI 9 32 493.719506229366 985.424459525532 2 493.7197570800781 MULTI HCD FTMS 0 0 0 8871 56461.12890625 1 0 0 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SDSEPEAPI_ REV__ENST00000317276.8_1_17:8044061-8044169:-|nuORF 16.942295170755138 0.21397866736869717 2 EW{I|L} 3 -1 25.049 0 0 2.542 0 0 539.1905995099625 0 539.1905995099625 0 15.445312593723983 0 0 0 0 0 0.4247425010840047 0 EW{I|L} 2.542 - 9 NaN NaN 92250.7 NaN 6334 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8877 45.673 NaN 121730 35 0 31889 0.261 + 35221 YVLTIMNMV 9 44 542.2847064762606 NaN 0 542.2845458984375 PEAK HCD FTMS 0 0 0 8871 18152.5625 0.5702201309085465 1 -0.026271820068359375 6 Unmodified _YVLTIMNMV_ ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000565793.5_1_15:79069566-79092863:-|nuORF;ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF 10.823927491677226 0.2427956001690155 2 TAQ 3 8 10.802 0 0 0.99782 0 0 164.05853541170228 615.3216646783811 779.3802000900835 0 0 0 0 0 0 0 0 0 TAQ 0.99782 - 18 + NaN NaN 104082.8 NaN 6335 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8878 45.676 NaN 120360 35 0 20103 0.261 -1 RYLSPKYIKMF 11 47 487.93560805191515 1460.7849947559455 3 487.9353942871094 MULTI HCD FTMS 0 0 0 8871 24780.396484375 0.060596674472928325 79 -1.7084236145019531 7 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 3.3557259375316324 0.404203592500566 2 {M(Oxidation (M))|F} 1 -1 9.2917 0 0 0.63608 0 0 744.4333845037955 566.3053401927807 1310.7387246965764 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 0.63608 + + 6 + NaN NaN 122515.1 NaN 6336 2540 8871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8880 45.681 NaN 2037900 35 0 254870 0.327 + 16081 LPSSATTHAI 10 104 499.26958960916204 996.5246262851241 2 500.28961181640625 MULTI HCD FTMS 0 0 0 8879 140275.5 0.8818285579577043 -3 0.0788726806640625 1 Unmodified _LPSSATTHAI_ REV__ENSG00000263528|ENST00000581977|IKBKE;REV__nc|ENSG00000263528|Q14164-2|IKBKE 25.399314129420986 0.2735354021946395 2 EP{I|L}A[TA]DP 8 -1 48.273 0 0 4.8441 0 0 0 199.10871301822502 199.10871301822502 8.314447763750351 0 0 0 0 0.7742275032520141 1.2218487496163564 1.3441876774005248 0 EP{I|L}A[TA]DP 4.8441 - 6729 + NaN NaN 394939.5 NaN 6337 2541 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8881 45.685 NaN 87595 35 0 6448.3 0.261 -1 MPEDGQVNI 9 41 509.7287759838778 1017.4429990345557 2 509.7286376953125 MULTI HCD FTMS 0 0 0 8879 34687.953125 0.6801717288628865 5 -0.10152816772460938 2 Oxidation (M) _M(Oxidation (M))PEDGQVNI_ ENSG00000099949|ENST00000646124|LZTR1;ENST00000463909.1_1_22:21349904-21350666:+|nuORF;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF 8.745405648335112 0.2847203663274469 2 VN{I|L} 3 -1 33.5 0 0 3.2926 0 0 673.2364369123062 0 673.2364369123062 0 33.499934467764874 0 0 0 0.5 0 0 0.3807196863200844 VN{I|L} 3.2926 + + 9 NaN NaN 103215.3 NaN 6338 2541 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8882 45.689 NaN 117820 35 0 8160 0.261 + 6827 FPSRNKLFDHL 11 52 458.58226135661664 1372.72495467005 3 458.5820007324219 MULTI HCD FTMS 0 0 0 8879 59895.98046875 0.9472103467732679 -4 0.1118927001953125 3 Unmodified _FPSRNKLFDHL_ ENSG00000168724|ENST00000648817|DNAJC21;ENST00000509626.1_1_5:34954007-34954816:+|nuORF;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21 13.534932898082838 0.33915209766063664 2 YY{I|L} 3 10 22.447 0 0 1.6352 0 0 0 930.4919584144437 930.4919584144437 1.478174818886373 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 1.6352 - 15 NaN NaN 95358.1 NaN 6339 2541 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8883 45.692 NaN 45996 35 0 4770.8 0.261 -1 0 23 643.5337718108984 NaN 0 643.340576171875 PEAK HCD FTMS 0 0 0 8879 6316.3857421875 1 0 0 4 NaN NaN 2 V 1 -1 0.088644 0 0 0.0068981 0 0 593.7180430341031 589.2455538385374 1182.9635968726404 0 0 0 0 0 0 0 0 0 V 0.0068981 - 1 + NaN NaN 98010.5 NaN 6340 2541 8879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8885 45.697 NaN 146230 35 0 11323 0.327 + 34594 YPNKYESVI 9 49 556.7846516707813 1111.5547504083625 2 556.78466796875 MULTI HCD FTMS 0 0 0 8884 63189.91015625 0.34905291074339395 6 -0.14454269409179688 1 Unmodified _YPNKYESVI_ ENSG00000100280|ENST00000357586|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-4|AP1B1;ZNRF3-AP1B1|1|fusion;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|3|fusion;ZNRF3-AP1B1|4|fusion 24.990960013464015 0.14443998892849796 2 SV{I|L} 3 6 33.258 0 0 2.992 0 0 794.3614388511749 0 794.3614388511749 0 12.059771852360797 0 0 0 0 0 0.7059771852360797 0 + SV{I|L} 2.992 + + 61 NaN NaN 110710.3 NaN 6341 2542 8884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8886 45.702 NaN 210620 35 0 18074 0.261 + 19396 NPFKQENVL 9 64 544.7903020431085 1087.5660511530168 2 544.7904663085938 MULTI HCD FTMS 0 0 0 8884 79202.8203125 1 0 0 2 Unmodified _NPFKQENVL_ ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1 23.789781309258295 0.1548179064208189 2 NV{I|L} 3 6 31.867 0 0 2.9301 0 0 743.3620472638687 0 743.3620472638687 0 16.91962823435958 0 0 0 0 0 0 0.805462187404089 + NV{I|L} 2.9301 + + 61 NaN NaN 120626.1 NaN 6342 2542 8884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8887 45.705 NaN 95664 35 0 9262.1 0.262 + 376 AIINDFAKDRF 11 40 437.23484766551707 1308.6827135967512 3 438.2378845214844 MULTI HCD FTMS 0 0 0 8884 25745.119140625 0.30513875241259025 12 -0.2858009338378906 3 Unmodified _AIINDFAKDRF_ ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3 1.214830529360525 0.41359283248740725 2 HP 2 11 19.464 0 0 1.4873 0 0 0 1071.5836088859228 1071.5836088859228 3.979400086720375 0 0 0 0 0 0 0 0 HP 1.4873 - 8 + NaN NaN 95125.4 NaN 6343 2542 8884 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8889 45.71 NaN 236870 35 0 24808 0.327 -1 KMPKFKMPSF 10 66 419.555750436048 1255.6454219083441 3 419.5560302734375 MULTI HCD FTMS 0 0 0 8888 112107.8046875 0.2655853397800219 26 -0.6961517333984375 1 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 37.771325159832564 0.16474695691370878 2 {M(Oxidation (M))|F}K[WE]{M(Oxidation (M))|F} 5 -1 22.307 0 0 1.7765 0 0 500.2766193406723 0 500.2766193406723 0 15.400990676322905 0 0 0 0.2614393726401688 0 0.3494850021680094 0 {M(Oxidation (M))|F}K[WE]{M(Oxidation (M))|F} 1.7765 - 84 + NaN NaN 135311.3 NaN 6344 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8890 45.715 NaN 220990 35 0 22653 0.261 + -1 MPEVKVETI 9 67 531.2808756229659 1060.5471983127318 2 531.28076171875 MULTI HCD FTMS 0 0 0 8888 77262.8828125 0.5716230358503018 5 -0.13153076171875 2 Oxidation (M) _M(Oxidation (M))PEVKVETI_ REV__ENSG00000149636|ENST00000373750|DSN1;REV__nc|ENSG00000149636|Q9H410-2|DSN1;REV__nc|ENSG00000149636|Q9H410-3|DSN1;REV__nc|ENSG00000149636|Q9H410-4|DSN1 15.248480904072842 0.22861284681709862 2 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 9 -1 + 25.837 0 0 2.4362 2.4362 87.044 0 0 0 5.888174651779966 2.6490872423367797 2.6490872423367797 17.213403050078778 0 1.7474250108400469 0 0 0 {M(Oxidation (M))|F}PVEV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VE[KS]{I|L}{I|L}E 2.4362;0.8131 -;- 167 + NaN NaN 117681.8 NaN 6345 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8891 45.718 NaN 318410 35 0 71302 0.263 + 26100 SPIHFKAGPDF 11 57 405.8770303786263 1214.609261736079 3 405.8898620605469 MULTI HCD FTMS 0 0 0 8888 45422.27734375 0.48322812645371294 7 -0.16753005981445312 3 Unmodified _SPIHFKAGPDF_ REV__ENSG00000159640|ENST00000290866|ACE;REV__ENST00000578839.5_1_17:61562212-61574724:+|nuORF;REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF;REV__nc|ENSG00000159640|P12821-2|ACE;REV__nc|ENSG00000159640|P12821-3|ACE;REV__nc|ENSG00000159640|P12821-4|ACE 14.405379775768559 0.3315678654765638 2 W{M(Oxidation (M))|F}{I|L}KQ[DP]{M(Oxidation (M))|F} 8 -1 36.196 0 0 2.98 0 0 135.06837660957189 0 135.06837660957189 0 29.206094119810544 0 0 0 0.5 0 0.4247425010840047 0.5 W{M(Oxidation (M))|F}{I|L}KQ[DP]{M(Oxidation (M))|F} 2.98 - 83 NaN NaN 131219.9 NaN 6346 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8892 45.722 NaN 177960 35 0 24283 0.261 + 15328 LPAVDEKL 8 40 442.7582086998296 883.5018644664592 2 442.75811767578125 MULTI HCD FTMS 0 0 0 8888 89675.5078125 1 0 0 4 Unmodified _LPAVDEKL_ ENSG00000234906|ENST00000252490|APOC2;ENST00000592257.5_2_19:45449319-45452503:+|nuORF 43.77239144664712 0.1824688044483776 2 {I|L}PAVD 5 3 67.18 0 0 7.6039 0 0 0 385.20889762836697 385.20889762836697 54.47743773147742 0 0 0 0 1.25 1.6989700043360187 0.4247425010840047 0 + {I|L}PAVD 7.6039 + + 36 + NaN NaN 113323.2 NaN 6347 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8893 45.725 NaN 98960 35 0 5696.8 0.261 + 21962 QELNDRFANY 10 41 635.2968591931756 1268.579165453151 2 635.2965087890625 MULTI HCD FTMS 0 0 0 8888 57749.06640625 0.573257471138323 4 -0.10850906372070312 5 Unmodified _QELNDRFANY_ ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 10.799506525563784 0.4100970765206026 2 [TP]NA{M(Oxidation (M))|F} 5 8 14.983 0 0 1.1811 0 0 0 735.3125094049436 735.3125094049436 4.5251224338457146 0 0 0 0 0 0 0 0 [TP]NA{M(Oxidation (M))|F} 1.1811 - 15 + NaN NaN 106453.4 NaN 6348 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8894 45.728 NaN 159380 35 0 37862 0.264 + -1 LPPYPLPRCCS 11 46 434.8821235406956 NaN 0 434.88201904296875 PEAK HCD FTMS 0 0 0 8888 43456.328125 0.5623545247448588 50 -0.9855804443359375 6 Carbamidomethyl (C) _LPPYPLPRC(Carbamidomethyl (C))CS_ REV__ENST00000233027.9_1_3:52804704-52804962:-|nuORF 1.214830529360525 0.33867401910978034 2 P 1 -1 1.9897 0 0 0.22929 0 0 300.43855020463496 467.2308443658813 767.6693945705163 0 0 0 0 0 0 0 0 0 P 0.22929 + + 3 + NaN NaN 108703.9 NaN 6349 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8895 45.732 NaN 196880 35 0 19843 0.261 + 6769 FPQPEKESF 9 59 554.7690565098276 1107.523560086455 2 554.7852783203125 MULTI HCD FTMS 0 0 0 8888 37151.34375 0.6376047566018607 3 -0.07223129272460938 7 Unmodified _FPQPEKESF_ ENSG00000135476|ENST00000257934|ESPL1;ENST00000549154.1_1_12:53682884-53683443:+|nuORF;ESPL1|p.G1685V|1|0.77|ENSG00000135476|chr12:53289535-53289535|G/T|missense_variant;nc|ENSG00000135476|Q14674-2|ESPL1 40.23920728925047 0.06424668180817725 2 QQM{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PE 7 7 50.188 0 0 4.5315 0 0 232.14210707832189 0 232.14210707832189 0 30.991822159605896 0 0 0 0.4247425010840047 0 0.8807196863200843 0.9386218330464625 QQM{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PE 4.5315 - 559 NaN NaN 110638.4 NaN 6350 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8896 45.735 NaN 25638 35 0 4330.9 0.262 + -1 WCCVLDVYEL 10 26 452.8699965134446 NaN 0 452.8701171875 PEAK HCD FTMS 0 0 0 8888 5375.00732421875 0.3184058889736839 2 -0.045940399169921875 8 2 Carbamidomethyl (C) _WC(Carbamidomethyl (C))C(Carbamidomethyl (C))VLDVYEL_ REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96735.1 NaN 6351 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8897 45.738 NaN 55339 35 0 5157.3 0.261 + 15075 LLYLFSMMKRF 11 38 483.59807212869134 1447.7723869862741 3 483.9326477050781 MULTI HCD FTMS 0 0 0 8888 5900.0615234375 0.3001472303787799 3 -0.07223129272460938 9 Unmodified _LLYLFSMMKRF_ ENST00000306434.7_1_2:85769027-85769380:+|nuORF 1.214830529360525 0.41359283248740725 2 {M(Oxidation (M))|F} 1 10 18.979 0 0 1.3109 0 0 1282.69346655346 0 1282.69346655346 0 15.880456295278407 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.3109 + + 3 + NaN NaN 105761 NaN 6352 2543 8888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8899 45.743 NaN 2574100 35 0 541510 0.327 + 25018 RYVRRLDFF 9 108 424.57186453097495 1270.693764193125 3 424.57196044921875 MULTI HCD FTMS 0 0 0 8898 1225352.625 0.7226680628330919 5 -0.11822128295898438 1 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 33.4449034751529 0.0954363425218424 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 25.969 0 0 2.0437 0 0 958.5467955310845 0 958.5467955310845 0 1.928031367991565 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0437 + + 132 + NaN NaN 471895.9 NaN 6353 2544 8898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8900 45.748 NaN 270430 35 0 29650 0.261 -1 0 64 538.2473996886835 1074.4802464441668 2 538.7378540039062 MULTI HCD FTMS 0 0 0 8898 22591.138671875 0.6551309399485644 8 -0.19379043579101562 2 NaN NaN 2 EPQ 3 -1 26.159 0 0 2.4345 0 0 702.2986587626419 0 702.2986587626419 0 1.936974992327123 0 0 0 0 0 0.7742275032520141 0 EPQ 2.4345 - 64 NaN NaN 122670.7 NaN 6354 2544 8898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8901 45.751 NaN 148830 35 0 12760 0.261 + 15910 LPLRHEKLD 9 63 560.826614540256 1119.6386761473118 2 561.3275756835938 MULTI HCD FTMS 0 0 0 8898 18400.744140625 0.5164928610117605 -3 0.062267303466796875 3 Unmodified _LPLRHEKLD_ REV__ENSG00000171241|ENST00000303383|SHCBP1;REV__ENST00000566016.5_1_16:46637844-46655271:-|nuORF 3.5964929083625545 0.32375295897743744 2 AQ{NN|[MP]|[D{I|L}]|[EV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 6 -1 4.1812 0 0 0.37344 0 0 440.35524216469304 0 440.35524216469304 0 -1.3919815197522194 -1.3919815197522194 0 0 0 0 0 0 AQ{NN|[MP]|[D{I|L}]|[EV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 0.37344 - 20 + NaN NaN 103352.8 NaN 6355 2544 8898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8903 45.756 NaN 415900 35 0 69975 0.327 + 24103 RYALQMEQL 9 60 584.2949896319406 1166.575426330681 2 584.2950439453125 MULTI HCD FTMS 0 0 0 8902 200212.859375 0.805501800771303 2 -0.06256866455078125 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 84.5221896805406 0.004669506596793478 2 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 86.916 0 0 7.4506 7.4506 91.108 0 0 0 7.147642715192504 72.96388461952553 7.147642715192504 9.208187539523749 0 2.504432191740108 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L};[YR]YY[YV]Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[TA]{[QS]|[NT]}MQ{I|L} 7.4506;6.6612;6.6612;5.8756;4.4453;4.2574;3.6559;2.3958;2.3117 +;-;-;-;-;-;-;-;- + 384 NaN NaN 145776.1 NaN 6356 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8904 45.761 NaN 328770 35 0 20418 0.261 + 26912 SYLDRTEQL 9 82 562.7825871337141 1123.550621334228 2 563.7948608398438 MULTI HCD FTMS 0 0 0 8902 18101.5390625 0.1413079030008117 -4 0.07523727416992188 2 Unmodified _SYLDRTEQL_ ENSG00000065268|ENST00000585809|WDR18 12.240655878213236 0.2545997876781172 2 PY{M(Oxidation (M))|F}E{I|L}SK 7 8 40.9 0 0 3.6403 0 0 0 256.1298011772255 256.1298011772255 3.0811447376108703 0 0 0 0 0 0 0.5501648626366046 0.3494850021680094 PY{M(Oxidation (M))|F}E{I|L}SK 3.6403 - 793 + NaN NaN 140233.6 NaN 6357 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8905 45.764 NaN 169040 35 0 15514 0.261 + 18200 MPDLPEKL 8 55 479.74950118057643 957.4844494279529 2 479.7492980957031 MULTI HCD FTMS 0 0 0 8902 136240.34375 0.5359675382268139 -24 0.5899429321289062 3 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 41.95555342248728 0.20580824963847894 2 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 51.261 0 0 5.3538 5.3538 92.071 0 0 0 30.292232800463417 11.237125054200234 11.237125054200234 51.26133293054398 0 1.6549471895720984 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 5.3538 + + 71 + NaN NaN 111983.5 NaN 6358 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8906 45.768 NaN 131880 35 0 6871.4 0.261 -1 QYNMNFEKL 9 54 601.779217512943 1201.5438820926859 2 601.7794189453125 MULTI HCD FTMS 0 0 0 8902 49940.65625 0.9144811062576482 4 -0.10525131225585938 4 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-2|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 19.361941925380144 0.1930734562688509 2 C(Carbamidomethyl (C))[HN]E 4 -1 16.198 0 0 1.3481 0 0 0 658.3418673150999 658.3418673150999 -2.8533500713746207 0 -2.8533500713746207 0 0 0 0 0 0 C(Carbamidomethyl (C))[HN]E 1.3481 - 213 + NaN NaN 106151 NaN 6359 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8907 45.771 NaN 115070 35 0 8827.7 0.262 + 30548 VNEDPKDTL 9 40 515.7561307481836 1029.4977085631672 2 515.7564086914062 MULTI HCD FTMS 0 0 0 8902 13876.90625 0.2223479572960294 11 -0.2795372009277344 5 Unmodified _VNEDPKDTL_ ENSG00000084731|ENST00000264712|KIF3C 5.296884461304476 0.3108627248283497 2 T{I|L} 2 7 25.969 0 0 2.5225 0 0 797.3566761701187 0 797.3566761701187 0 25 0 0 0 0.5 0 0 0 + T{I|L} 2.5225 + + 4 NaN NaN 96380.9 NaN 6360 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8908 45.774 NaN 51788 35 0 5339.2 0.261 + 2478 DRRHFKRMRF 10 29 483.59807212869134 1447.7723869862741 3 483.59857177734375 MULTI HCD FTMS 0 0 0 8902 3637.939453125 0.1833051824991859 5 -0.12158966064453125 6 Unmodified _DRRHFKRMRF_ ENSG00000174231|ENST00000304992|PRPF8 0.6268255596534771 0.47198581731947004 2 G 1 10 3.9794 0 0 0.27486 0 0 982.5703128669367 405.1564119928344 1387.7267248597711 0 0 0 0 0 0 0 0 0 G 0.27486 - 1 + NaN NaN 92360 NaN 6361 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8909 45.778 NaN 53771 35 0 5303.1 0.261 + -1 CVSLLLIFVV 10 45 581.8467407226562 NaN 0 581.8467407226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))VSLLLIFVV_ REV__ENSG00000166527|ENST00000299665|CLEC4D 1.844237919475145 0.33860587697544825 2 V 1 -1 5.4846 0 0 0.47212 0 0 611.9461943341813 447.64057336978755 1059.586767703969 0 0 0 0 0 0 0 0 0 V 0.47212 + + 2 + NaN NaN 104167.1 NaN 6362 2545 8902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8911 45.783 NaN 120000 35 0 6546.7 0.327 + 582 APELESKESVL 11 57 601.3192145064174 1200.6238760796348 2 601.3192138671875 MULTI HCD FTMS 0 0 0 8910 60654.4609375 0.8127836294434844 1 -0.03627777099609375 1 Unmodified _APELESKESVL_ ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4 32.61649475675321 0.18450215852572865 2 {I|L}ESK{[ES]|[DT]|[{I|L}C]}V{I|L} 8 3 47.498 0 0 3.9561 0 0 297.1317311017594 0 297.1317311017594 0 28.914412723804546 0 0 0 1.7059771852360797 0 0.3807196863200844 0 + {I|L}ESK{[ES]|[DT]|[{I|L}C]}V{I|L} 3.9561 + + 140 NaN NaN 105520.9 NaN 6363 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8912 45.787 NaN 294680 35 0 23992 0.261 -1 VELRAKKGM 9 72 524.3020044307244 NaN 0 524.2915649414062 PEAK HCD FTMS 0 0 0 8910 4806.62255859375 0.3796715805342991 -3 0.07223129272460938 2 Oxidation (M) _VELRAKKGM(Oxidation (M))_ tr|U7SRG1|U7SRG1_FUSNUPhosphateacetyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01589PE=3SV=1 3.944395688203298 0.27613285122220627 2 EAED 4 -1 14.157 0 0 1.3526 0 0 132.21267845300787 467.19968591861567 599.4123643716235 0 0 0 0 0 0 0 0 0 EAED 1.3526 - 23 + NaN NaN 133927.9 NaN 6364 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8913 45.791 NaN 154250 35 0 22799 0.261 -1 TAQPQELVM 9 44 516.7565276819421 NaN 0 516.7371215820312 PEAK HCD FTMS 0 0 0 8910 12352.36328125 0.7537322762538121 6 -0.15452957153320312 3 Oxidation (M) _TAQPQELVM(Oxidation (M))_ ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197 9.38312468134398 0.24977752951804 2 N 1 -1 1.5938 0 0 0.15451 0 0 438.7151905183778 475.7126558893188 914.4278464076966 0 0 0 0 0 0 0 0 0 N 0.15451 - 5 + NaN NaN 116418.2 NaN 6365 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8914 45.794 NaN 291120 35 0 32327 0.261 + -1 TCSTRHKRLL 10 46 636.3541406104164 1270.6937282876327 2 636.354248046875 MULTI HCD FTMS 0 0 0 8910 28244.041015625 0.4943793508767 9 -0.22025299072265625 4 Carbamidomethyl (C) _TC(Carbamidomethyl (C))STRHKRLL_ REV__ENST00000589630.1_1_18:32821039-32822911:+|nuORF 1.4819007175156935 0.4674597685733628 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.31317 0 0 665.3633582698577 455.2426851861938 1120.6060434560516 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.31317 - 1 + NaN NaN 136448.7 NaN 6366 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8915 45.797 NaN 195630 35 0 24527 0.263 + 7956 GEAVVNRVF 9 59 495.77217713311336 989.5298013330267 2 495.7728576660156 MULTI HCD FTMS 0 0 0 8910 47678.21875 0.29446710957273886 -4 0.08524322509765625 5 Unmodified _GEAVVNRVF_ ENSG00000240065|ENST00000374859|PSMB9;ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9 51.629811660486645 0.02929079705179888 2 {[DA]|[EG]}AVVNRV{M(Oxidation (M))|F} 9 0 + 65.868 0 0 6.6565 6.6565 87.321 0 0 0 4.762036441594191 5.585252112503426 4.762036441594191 5.585252112503426 0 2.5 0 0 0.4247425010840047 + + {[DA]|[EG]}AVVNRV{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VVNRV{M(Oxidation (M))|F};{[DA]|[EG]}AVVGGRV{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[PG]VNRV{M(Oxidation (M))|F};{[ET]|[MV]}[KP]NRV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}EVNRV{M(Oxidation (M))|F};{[ET]|[MV]}[KP]GGRV{M(Oxidation (M))|F};{[DA]|[EG]}[R{I|L}]N[VG]V{M(Oxidation (M))|F} 6.6565;6.0921;5.726;4.2892;3.6586;3.3027;2.7225;2.5175 +;-;-;-;-;-;-;- + 104 + NaN NaN 121922.2 NaN 6367 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8916 45.801 NaN 166280 35 0 10116 0.261 + 11570 IYSTKLYRF 9 49 595.8322575716987 1189.6499622101974 2 595.8322143554688 MULTI HCD FTMS 0 0 0 8910 26462.287109375 0.8443246460862955 1 -0.03627777099609375 6 Unmodified _IYSTKLYRF_ ENSG00000148925|ENST00000278174|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;nc|ENSG00000148925|Q9BSF8-2|BTBD10 12.240655878213236 0.2545997876781172 2 {I|L}YS 3 6 43.188 0 0 3.6303 0 0 0 823.4486178033811 823.4486178033811 39.00637524615391 0 0 0 0 0 2 0 0 + {I|L}YS 3.6303 + + 14 + NaN NaN 105608.8 NaN 6368 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8917 45.804 NaN 108040 35 0 11500 0.261 + 33396 YGNTLVEFR 9 51 549.7820486515097 1097.5495443698194 2 550.2825317382812 MULTI HCD FTMS 0 0 0 8910 27515.08203125 0.41447769013921404 -17 0.4355010986328125 7 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 11.494710602746466 0.2610445893512368 2 TN{[DS]|[MA]|[CV]|TT} 4 7 25.93 0 0 2.3625 0 0 662.3751855278554 0 662.3751855278554 0 -1.517412290202671 -1.517412290202671 0 0 1.274227503252014 0 0 0 TN{[DS]|[MA]|[CV]|TT} 2.3625 - 46 NaN NaN 116458.3 NaN 6369 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8918 45.807 NaN 46593 35 0 6635.2 0.261 + 2295 DLSTHQPAL 9 28 491.2538258580118 980.4930987828236 2 491.25396728515625 MULTI HCD FTMS 0 0 0 8910 32089.466796875 0.5064302915328114 7 -0.17753219604492188 8 Unmodified _DLSTHQPAL_ REV__ENSG00000133962|ENST00000256343|CATSPERB;REV__nc|ENSG00000133962|Q9H7T0-2|CATSPERB 3.944395688203298 0.32111559684428237 2 C 1 -1 0.71334 0 0 0.072753 0 0 578.3083586478612 296.15989099674067 874.4682496446019 0 0 0 0 0 0 0 0 0 C 0.072753 - 1 + NaN NaN 86252.5 NaN 6370 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8919 45.81 NaN 33920 35 0 4370 0.261 -1 RQCTHWLI 8 26 557.2844456862421 1112.554338439284 2 557.7874145507812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))THWLI_ ENSG00000141968|ENST00000602142|VAV1;nc|ENSG00000141968|P15498-2|VAV1;VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant 1.844237919475145 0.5392561982033289 2 G 1 -1 1.2591 0 0 0.11317 0 0 573.8119200816653 478.7036226861938 1052.5155427678592 0 0 0 0 0 0 0 0 0 G 0.11317 - 1 + NaN NaN 99268.4 NaN 6371 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8920 45.814 NaN 126990 35 0 9698.6 0.261 + 32643 WMDAMSPAI 9 67 511.22923355522676 1020.4439141772535 2 511.2288513183594 MULTI HCD FTMS 0 0 0 8910 38649.77734375 1 0 0 10 Unmodified _WMDAMSPAI_ REV__ENSG00000185038|ENST00000389758|MROH2A 7.910154910731844 0.2910521888787154 2 A{I|L} 2 -1 25.969 0 0 2.5449 0 0 818.3102470937637 0 818.3102470937637 0 15 0 0 0 0.5 0 0 0 A{I|L} 2.5449 + + 21 NaN NaN 104677.8 NaN 6372 2546 8910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8922 45.819 NaN 992690 35 0 99557 0.327 + 26913 SYLDRTEQL 9 82 562.7825871337141 1123.550621334228 2 562.78271484375 MULTI HCD FTMS 0 0 0 8921 503702.0625 0.6517963429451171 -3 0.07553863525390625 1 Unmodified _SYLDRTEQL_ ENSG00000065268|ENST00000585809|WDR18 97.74103586103693 0.004323122048066454 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L} 9 0 + 76.952 0 0 6.849 6.849 90.005 0 0 0 3.583697955704025 3.583697955704025 3.583697955704025 9.208187539523749 0 2.56295299324845 0 0.75 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTE[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DR[MN]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L};[HM]{I|L}{I|L}{[YC]|[HE]}{I|L}[MT];[VP][YN]{[WT]|[RM]}{I|L}[MT] 6.849;6.0294;4.9913;2.6254;1.5638;1.0847 +;-;-;-;-;- + 615 NaN NaN 238722.3 NaN 6373 2547 8921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8923 45.823 NaN 406710 35 0 31507 0.261 -1 0 63 608.6365991735835 1822.8879681209503 3 608.9708862304688 MULTI HCD FTMS 0 0 0 8921 97865.59375 1 0 0 2 NaN NaN 2 {M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{M(Oxidation (M))|F}{I|L} 11 -1 53.576 0 0 2.9391 0 0 82.00858854236579 423.1500297806346 505.1586183230004 0 0 0 0 0 0 0 0.3807196863200844 0.3807196863200844 {M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AQ{M(Oxidation (M))|F}{I|L} 2.9391 - 539 + NaN NaN 140068.2 NaN 6374 2547 8921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8924 45.827 NaN 160690 35 0 8766.8 0.261 -1 0 56 575.6618587327525 1723.9637467984576 3 575.9961547851562 MULTI HCD FTMS 0 0 0 8921 22279.765625 0.2514204837239794 6 -0.14125442504882812 3 NaN NaN 2 QNNWT 5 -1 39.196 0 0 2.2736 0 0 0 1077.6420187084989 1077.6420187084989 11.977437731477423 0 0 0 0 0 0 0.4247425010840047 0 QNNWT 2.2736 - 69 + NaN NaN 130064.9 NaN 6375 2547 8921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8925 45.83 NaN 245690 35 0 32049 0.261 + 35229 YVMRTTTTI 9 62 543.2859179813487 1084.5572830294973 2 543.2852172851562 MULTI HCD FTMS 0 0 0 8921 63405.078125 0.8631741572197196 1 -0.023021697998046875 4 Unmodified _YVMRTTTTI_ REV__ENSG00000151150|ENST00000280772|ANK3 24.990960013464015 0.14443998892849796 2 TMTTT{I|L} 6 -1 40.667 0 0 3.7496 0 0 418.2332936017594 0 418.2332936017594 0 10.22160958700539 0 0 0 0.8807196863200843 0 0.5 0 TMTTT{I|L} 3.7496 - 596 NaN NaN 116665 NaN 6376 2547 8921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8926 45.833 NaN 169930 35 0 35546 0.261 + 19279 NLPQHPDVEM 10 52 590.2765290453582 1178.5385051575163 2 590.276611328125 MULTI HCD FTMS 0 0 0 8921 63829.83203125 0.817705288079777 -3 0.07553863525390625 5 Unmodified _NLPQHPDVEM_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000497453.1_1_1:154524878-154531400:-|nuORF 11.494710602746466 0.4035943721457025 2 [HN]SVSM 6 6 29.654 0 0 2.5161 0 0 0 520.2565401666624 520.2565401666624 8.68440000316717 0 0 0 0 0 0 0.7742275032520141 0 [HN]SVSM 2.5161 - 40 + NaN NaN 121052.5 NaN 6377 2547 8921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8927 45.837 NaN 61353 35 0 5817.4 0.263 -1 RYQQWMERF 9 54 453.880101238919 NaN 0 453.8805236816406 PEAK HCD FTMS 0 0 0 8921 13379.26953125 0.5749494687695089 19 -0.503875732421875 6 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 4.189502756095605 0.27494509657688126 2 H 1 -1 3.0989 0 0 0.34214 0 0 330.4656945659255 435.1883944147094 765.6540889806349 0 0 0 0 0 0 0 0 0 H 0.34214 - 1 + NaN NaN 93945.1 NaN 6378 2547 8921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8929 45.842 NaN 1643400 35 0 208740 0.327 + 3870 EPLKPEER 8 105 499.26958960916204 996.5246262851241 2 500.2895202636719 MULTI HCD FTMS 0 0 0 8928 96178.6328125 0.6046178062412212 4 -0.0952301025390625 1 Unmodified _EPLKPEER_ ENSG00000159433|ENST00000290607|STARD9 25.399314129420986 0.40691472774782006 2 [{I|L}P]TRDG{I|L}PE 9 8 + 37.807 0 0 3.7939 3.7939 81.07 0 0 0 7.180475292681269 -3.018703090271792 -3.018703090271792 0.7453971233619683 0 0.3807196863200844 1.5228787452803376 0 0 [{I|L}P]TRDG{I|L}PE;[{I|L}P]TRDDPA{I|L};[{I|L}P]TEKTT[HA];[{I|L}P]TRDPVAE;[{I|L}P]TRDPAVE;[{I|L}P][RD]TG{I|L}PE;[{I|L}P][RD]TDPA{I|L};[{I|L}P]TRDG[EP]{I|L};[TP]{I|L}RDG{I|L}PE;[{I|L}P]TRDPAD{I|L} 3.7939;3.7191;3.6535;3.1507;3.0712;3.0411;2.9663;2.898;2.8518;2.8486 -;-;-;-;-;-;-;-;-;- 5866 NaN NaN 330413.7 NaN 6379 2548 8928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8930 45.846 NaN 311960 35 0 44872 0.261 -1 KMPKFKMPSF 10 76 419.555750436048 1255.6454219083441 3 419.555908203125 MULTI HCD FTMS 0 0 0 8928 81904.0078125 0.19403201949109064 31 -0.6722831726074219 2 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 16.274544907608252 0.35888541478244573 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.6913 0 0 1090.5665472518972 0 1090.5665472518972 0 3.8155999968328302 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 48 + NaN NaN 128844.1 NaN 6380 2548 8928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8931 45.85 NaN 349170 35 0 46499 0.261 + 23658 RPYDAEVSL 9 67 525.2669583352834 1048.5193637373668 2 525.2676391601562 MULTI HCD FTMS 0 0 0 8928 121986 0.8413793177773096 -5 0.13153076171875 3 Unmodified _RPYDAEVSL_ ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant 27.628801355627647 0.12213550946336599 2 VS{I|L} 3 6 40.445 0 0 3.8574 0 0 731.3248869555551 0 731.3248869555551 0 22.998037644757044 0 0 0 1 0 0.4247425010840047 0 + VS{I|L} 3.8574 + + 103 NaN NaN 149312.5 NaN 6381 2548 8928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8932 45.853 NaN 238430 35 0 25072 0.261 + 28861 TVQYSVAQY 9 56 529.761314462723 1057.508075992246 2 529.7611694335938 MULTI HCD FTMS 0 0 0 8928 68930.3515625 0.8453407352391114 -1 0.023021697998046875 4 Unmodified _TVQYSVAQY_ REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF;REV__ENST00000427841.5_1_3:195711549-195712546:-|nuORF 36.12702656103203 0.08312389501731911 2 HQAQY 5 -1 57.123 0 0 5.4016 0 0 412.2239095877522 0 412.2239095877522 0 40.924778212679485 0 0 0 1.4247425010840047 0 0 0.7302046884880937 HQAQY 5.4016 - 220 + NaN NaN 118454.1 NaN 6382 2548 8928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8933 45.856 NaN 201210 35 0 31608 0.263 + 28248 TLLDIGLS 8 54 416.24347959564676 NaN 0 416.2433166503906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TLLDIGLS_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|33|1|sense 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111549 NaN 6383 2548 8928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8935 45.861 NaN 548470 35 0 84761 0.327 + 7585 FYHDRFKVF 9 71 420.21706280382045 1257.6293590116613 3 420.2167663574219 MULTI HCD FTMS 0 0 0 8934 161718.296875 0.7402804834052253 -2 0.042682647705078125 1 Unmodified _FYHDRFKVF_ ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000100504|P06737-2|PYGL 40.72490554402381 0.06201705472789164 2 DHYE 4 8 49.285 0 0 3.9188 0 0 695.4108709688442 0 695.4108709688442 0 8.851518780601921 0 0 0 1.274227503252014 0 0.7614393726401688 0 DHYE 3.9188 - 302 NaN NaN 166162.7 NaN 6384 2549 8934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8936 45.866 NaN 95798 35 0 6938.3 0.261 + 33676 YKLGKVLVT 9 49 510.82610670017493 1019.6376604671499 2 510.8260803222656 MULTI HCD FTMS 0 0 0 8934 20688.791015625 0.5439736645257941 2 -0.0525665283203125 2 Unmodified _YKLGKVLVT_ REV__ENSG00000174928|ENST00000340171|C3orf33;REV__nc|nan|Q6P1S2-2|C3orf33 10.073929032068715 0.27331982688540024 2 KY 2 -1 19.464 0 0 1.9089 0 0 0 725.4559420221311 725.4559420221311 13.979400086720375 0 0 0 0 0 0 0 0 KY 1.9089 - 10 + NaN NaN 95516.4 NaN 6385 2549 8934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8937 45.87 NaN 65038 35 0 10442 0.261 + 12618 KVPPAINQF 9 33 507.2924414992462 1012.5703300652924 2 507.292236328125 MULTI HCD FTMS 0 0 0 8934 26329.833984375 0.30535638712001567 -18 0.45849609375 3 Unmodified _KVPPAINQF_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF 14.838274106304384 0.23215694253501695 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 99621.9 NaN 6386 2549 8934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8938 45.873 NaN 81840 35 0 8862.7 0.261 + -1 PKMPFNII 8 43 488.2699309307923 NaN 0 488.2700500488281 PEAK HCD FTMS 0 0 0 8934 13405.8779296875 0.4280543733946346 13 -0.34253692626953125 4 Oxidation (M) _PKM(Oxidation (M))PFNII_ REV__ENSG00000187950|ENST00000537054|OVCH1;REV__nc|ENSG00000187950|Q7RTY7|OVCH1 2.302733041254933 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.71724 0 0 258.1718065863909 566.3064669244749 824.4782735108658 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.71724 + + 2 + NaN NaN 99510.6 NaN 6387 2549 8934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8940 45.878 NaN 1448100 35 0 329170 0.327 + 25019 RYVRRLDFF 9 92 424.57186453097495 1270.693764193125 3 424.57171630859375 MULTI HCD FTMS 0 0 0 8939 581046.9375 0.3426801854186468 11 -0.2998008728027344 1 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 33.4449034751529 0.0954363425218424 2 D{M(Oxidation (M))|F}E 3 7 27.848 0 0 2.1916 0 0 861.5337475292281 0 861.5337475292281 0 0.6420404410090441 0 0 0 0 0 0.8807196863200843 0 D{M(Oxidation (M))|F}E 2.1916 - 58 NaN NaN 304311 NaN 6388 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8941 45.882 NaN 462640 35 0 52956 0.261 + 29966 VFIDKQTNL 9 88 539.3006506210714 1076.5867483089428 2 539.30029296875 MULTI HCD FTMS 0 0 0 8939 140222.96875 0.26564788901829156 -4 0.09529876708984375 2 Unmodified _VFIDKQTNL_ ENSG00000048740|ENST00000633077|CELF2;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319-3|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 55.23464941255904 0.024247875903973527 2 KD{I|L}D{I|L} 5 6 49.495 0 0 4.5974 0 0 474.24363906074376 0 474.24363906074376 0 24.43520923378955 0 0 0 0.9247425010840047 0 0.6505149978319906 0.7059771852360797 KD{I|L}D{I|L} 4.5974 - 473 NaN NaN 164902.4 NaN 6389 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8942 45.886 NaN 178150 35 0 23409 0.261 + -1 RTDMDLVKD 9 61 554.7690565098276 1107.523560086455 2 554.7854614257812 MULTI HCD FTMS 0 0 0 8939 6668.0859375 0.1144400950821591 9 -0.24370956420898438 3 Oxidation (M) _RTDM(Oxidation (M))DLVKD_ REV__ENSG00000173567|ENST00000651242|ADGRF3;REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF;REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3;REV__nc|ENSG00000173567|Q8IZF5-3|ADGRF3;REV__nc|ENSG00000173567|Q8IZF5|ADGRF3 12.240655878213236 0.2545997876781172 2 MTQQMQQ 7 -1 51.943 0 0 4.69 0 0 0 229.1184023492797 229.1184023492797 43.870863778373916 0 0 0 0 0 0 0 0.6237125054200234 MTQQMQQ 4.69 - 398 + NaN NaN 104397.2 NaN 6390 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8943 45.889 NaN 122750 35 0 19786 0.261 + 9489 HPWEVMPEL 9 47 569.2735448636703 1136.5325367941405 2 569.2741088867188 MULTI HCD FTMS 0 0 0 8939 30294.494140625 0.08802364108556435 59 -1.2300148010253906 4 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 15.847184025352803 0.2234401846867398 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3306978815061 752.3306978815061 22.245462655597095 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 30 + NaN NaN 104448.8 NaN 6391 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8944 45.892 NaN 173910 35 0 14213 0.261 + -1 AKWEDLTM 8 58 505.23856332845736 NaN 0 505.2288513183594 PEAK HCD FTMS 0 0 0 8939 4855.7177734375 1 0 0 5 Oxidation (M) _AKWEDLTM(Oxidation (M))_ REV__ENSG00000142864|ENST00000361219|SERBP1;REV__ENST00000484880.1_1_1:67885652-67890638:-|nuORF;REV__ENST00000510079.2_1_4:79102321-79102666:-|nuORF;REV__nc|ENSG00000142864|Q8NC51-2|SERBP1;REV__nc|ENSG00000142864|Q8NC51-4|SERBP1;REV__nc|ENSG00000142864|Q8NC51|SERBP1 15.847184025352803 0.3871869056683869 2 STE{I|L}PVT 7 -1 29.206 0 0 2.8961 0 0 116.0347305614085 162.02291284732658 278.0576434087351 0 0 0 0 0 0.8807196863200843 0 0 0 STE{I|L}PVT 2.8961 - 58 + NaN NaN 116485.9 NaN 6392 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8945 45.896 NaN 51595 35 0 5955.1 0.261 + -1 EEDWPKQCRL 10 35 454.2155577009208 1359.6248437029624 3 454.2157897949219 MULTI HCD FTMS 0 0 0 8939 11914.84765625 0.3873839520198805 1 -0.036228179931640625 6 Carbamidomethyl (C) _EEDWPKQC(Carbamidomethyl (C))RL_ REV__nc|ENSG00000151348|Q93063-3|EXT2 1.9063754702782614 0.46521295622613185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 93765.6 NaN 6393 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8946 45.899 NaN 128780 35 0 8123 0.261 + 9425 HPVFQQESF 9 45 559.7659988133187 1117.5174446934373 2 560.2679443359375 MULTI HCD FTMS 0 0 0 8939 33816.42578125 1 0 0 7 Unmodified _HPVFQQESF_ ENSG00000170430|ENST00000651593|MGMT 27.628801355627647 0.12213550946336599 2 QQES{M(Oxidation (M))|F} 5 4 43.104 0 0 3.8571 0 0 480.2489186017594 0 480.2489186017594 0 41.510234424404686 0 0 0 1.2302046884880937 0 0 0 + QQES{M(Oxidation (M))|F} 3.8571 + + 28 NaN NaN 101769 NaN 6394 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8947 45.902 NaN 98456 35 0 9194.8 0.261 + 2627 DVAQVTGALR 10 37 515.2885510667962 1028.5625492003924 2 515.2879028320312 MULTI HCD FTMS 0 0 0 8939 21167.40625 0.9055540817234561 1 -0.036228179931640625 8 Unmodified _DVAQVTGALR_ ENSG00000100985|ENST00000372330|MMP9 19.625955294349634 0.3275374527965692 2 [DV]AQ{[TV]|[{I|L}S]}Q{I|L}R 9 2 + 52.866 0 0 5.1398 5.1398 85.315 0 0 0 31.896512253176823 10.642492736872597 10.642492736872597 6.7216751192405155 0 0.9731975075880328 2 0 0 [DV]AQ{[TV]|[{I|L}S]}Q{I|L}R;[DV]AE[KA]Q{I|L}R;[DV]AQ{[TV]|[{I|L}S]}[AG]{I|L}R;[DV]A[AG]{[TV]|[{I|L}S]}Q{I|L}R;[DV]AE[KA][AG]{I|L}R 5.1398;4.4863;4.2445;4.2445;3.591 -;-;+;-;- + 46 + NaN NaN 97272.5 NaN 6395 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8948 45.906 NaN 71549 35 0 6170.6 0.261 + 479 ALTDYHLGLRT 11 46 630.3407163874036 1258.6668798416072 2 630.341552734375 MULTI HCD FTMS 0 0 0 8939 11449.99609375 0.21237945422258275 -6 0.13455963134765625 9 Unmodified _ALTDYHLGLRT_ REV__ENSG00000090061|ENST00000389879|CCNK;REV__ENST00000556641.5_1_14:99959014-99967243:+|nuORF;REV__ENST00000557165.5_1_14:99959014-99968584:+|nuORF;REV__nc|ENSG00000090061|O75909-1|CCNK;REV__nc|ENSG00000090061|O75909-2|CCNK;REV__nc|ENSG00000090061|O75909-4|CCNK 4.189502756095605 0.4005469306127019 2 V{I|L}HW[K{I|L}] 6 -1 21.528 0 0 1.7103 0 0 464.20320326972814 0 464.20320326972814 0 19.93378736925017 0 0 0 1.274227503252014 0 0 0 V{I|L}HW[K{I|L}] 1.7103 - 16 NaN NaN 91667.4 NaN 6396 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8949 45.909 NaN 42608 35 0 6557.8 0.261 + 14887 LKPSQGWIKS 10 31 572.3301536157137 1142.6457542982273 2 572.3278198242188 MULTI HCD FTMS 0 0 0 8939 9124.78125 0.5676764084274507 1 -0.036228179931640625 10 Unmodified _LKPSQGWIKS_ REV__ENST00000418347.6_1_7:98972373-98974137:+|nuORF 1.1933415558491238 0.46898715808974617 2 G 1 -1 2.4743 0 0 0.21654 0 0 532.3006748077961 550.2886446588499 1082.589319466646 0 0 0 0 0 0 0 0 0 G 0.21654 + + 2 + NaN NaN 88643 NaN 6397 2550 8939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8951 45.914 NaN 311500 35 0 50942 0.327 + 24104 RYALQMEQL 9 66 584.2949896319406 1166.575426330681 2 584.295166015625 MULTI HCD FTMS 0 0 0 8950 130501.2421875 0.5250361336083544 8 -0.20748138427734375 1 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 67.08073823543168 0.010032840856489532 2 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 0 + 85.921 0 0 7.3653 7.3653 90.93 0 0 0 7.147642715192504 64.5193091132105 7.147642715192504 9.208187539523749 0 2.4049471895720984 0 0 0.4247425010840047 + + [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}Q{[ES]|[DT]|[{I|L}C]}{[MG]|[TS]}{I|L};[YR]{[ES]|[DT]|[{I|L}C]}Q{I|L}MQ{I|L};[YR]{[ES]|[DT]|[{I|L}C]}[AG]{I|L}MQ{I|L};[YR]YY[YV]Q{I|L} 7.3653;6.5759;6.5759;5.7903;3.9994;3.8876;3.0983;2.3313 +;-;-;-;-;-;-;- + 468 NaN NaN 134718.8 NaN 6398 2551 8950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8952 45.918 NaN 281900 35 0 24859 0.261 + 9137 HPHDLVILM 9 57 545.789439405371 1089.564325877542 2 545.7894897460938 MULTI HCD FTMS 0 0 0 8950 107057.828125 0.5127223858286089 -8 0.20375823974609375 2 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 70.71552829651908 0.008856681705782516 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV]EV{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 62.145 0 0 5.7036 5.7036 92.96 0 0 0 3.6574248437336365 51.17554457367163 3.6574248437336365 62.14464470375219 0 2.1989700043360187 0 1.274227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV]EV{I|L}{I|L}{M(Oxidation (M))|F} 5.7036 - 112 NaN NaN 125421.7 NaN 6399 2551 8950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8953 45.922 NaN 56024 35 0 4457.3 0.261 -1 QYNMNFEKL 9 42 601.779217512943 1201.5438820926859 2 601.779296875 MULTI HCD FTMS 0 0 0 8950 27246.751953125 0.49892495892104916 10 -0.26357269287109375 3 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-2|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 6.2057823575117 0.30397260197431997 2 C(Carbamidomethyl (C)){I|L} 2 -1 15.573 0 0 1.2961 0 0 910.420702049025 0 910.420702049025 0 0.880456295278405 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){I|L} 1.2961 - 16 NaN NaN 91201.4 NaN 6400 2551 8950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8954 45.925 NaN 205910 35 0 78310 0.264 + 11118 IYIHRGELEN 10 35 415.22015110121816 NaN 0 415.2129821777344 PEAK HCD FTMS 0 0 0 8950 3950.798583984375 0.5288430347922314 -5 0.13152694702148438 4 Unmodified _IYIHRGELEN_ REV__ENSG00000134853|ENST00000257290|PDGFRA;REV__nc|ENSG00000134853|P16234-2|PDGFRA;REV__nc|ENSG00000134853|P16234-3|PDGFRA 5.40270961882225 0.33556031839241995 2 {I|L} 1 -1 4.6041 0 0 0.55576 0 0 580.2732356967739 132.04535852603752 712.3185942228114 0 0 0 0 0 0 0 0 0 {I|L} 0.55576 + + 2 + NaN NaN 115038 NaN 6401 2551 8950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8955 45.929 NaN 198000 35 0 12700 0.261 + 9149 HPIDIETSV 9 50 505.76121454724046 1009.5078761612809 2 505.7624816894531 MULTI HCD FTMS 0 0 0 8950 42800.09765625 0.8924079443738429 -2 0.0525665283203125 5 Unmodified _HPIDIETSV_ DIP2B|p.R1485Q|1|0.42|ENSG00000066084|chr12:50741515-50741515|G/A|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;nc|ENSG00000160305|Q14689-6|DIP2A 25.399314129420986 0.14091189997036632 2 TV[{I|L}P]ETSV 8 4 42.204 0 0 4.1807 0 0 165.0461140363297 0 165.0461140363297 0 26.286531417686092 0 0 0 0.805462187404089 0 0.805462187404089 0 TV[{I|L}P]ETSV 4.1807 - 107 NaN NaN 115598.1 NaN 6402 2551 8950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8956 45.932 NaN 58324 35 0 7568.5 0.261 + -1 SMSAEVFSNKF 11 36 631.7898872655072 1261.5652215978143 2 631.7894287109375 MULTI HCD FTMS 0 0 0 8950 25486.365234375 0.3742997057467614 -16 0.4093360900878906 6 Oxidation (M) _SM(Oxidation (M))SAEVFSNKF_ REV__ENSG00000042445|ENST00000295802|RETSAT 4.897010918128616 0.3974440401582579 2 KS{I|L}{M(Oxidation (M))|F} 4 -1 25.662 0 0 2.0341 0 0 768.277635642775 0 768.277635642775 0 25.661837734644593 0 0 0 0 0 0 0 KS{I|L}{M(Oxidation (M))|F} 2.0341 - 7 NaN NaN 103610.3 NaN 6403 2551 8950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8958 45.937 NaN 554230 35 0 104590 0.327 + 23576 RPDTLDPAL 9 50 499.26958960916204 996.5246262851241 2 499.2694091796875 MULTI HCD FTMS 0 0 0 8957 309041.1875 0.273305774252102 8 -0.20428085327148438 1 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 32.78568957990786 0.09846250359632436 2 DPA{I|L} 4 5 54.68 0 0 5.4871 0 0 582.3116858493345 0 582.3116858493345 0 32.71775040875461 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + DPA{I|L} 5.4871 + + 230 NaN NaN 172557.5 NaN 6404 2552 8957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8959 45.942 NaN 120730 35 0 9059 0.261 -1 MPDLPEKL 8 43 479.74950118057643 957.4844494279529 2 479.74920654296875 MULTI HCD FTMS 0 0 0 8957 87422.421875 0.34391854092903157 -17 0.4323387145996094 2 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 38.175570920033316 0.25436662042464897 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 -1 + 42.682 0 0 4.4578 4.4578 90.503 0 0 0 17.465846974768482 9.704999916446795 9.704999916446795 42.68237211568909 0 1.6307196863200843 0 0 0 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.4578 + + 34 + NaN NaN 102762.2 NaN 6405 2552 8957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8960 45.945 NaN 223400 35 0 17083 0.261 + 9150 HPIDIETSV 9 46 505.76121454724046 1009.5078761612809 2 505.76104736328125 MULTI HCD FTMS 0 0 0 8957 29624.41796875 0.6176870472374536 -1 0.02300262451171875 3 Unmodified _HPIDIETSV_ DIP2B|p.R1485Q|1|0.42|ENSG00000066084|chr12:50741515-50741515|G/A|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;nc|ENSG00000160305|Q14689-6|DIP2A 19.256988751693697 0.19398022840297344 2 STE[{I|L}P]VT{M(Oxidation (M))|F} 8 7 36.675 0 0 3.633 0 0 117.07818131127722 0 117.07818131127722 0 19.252509456924827 0 0 0 0.805462187404089 0 0.5 0 STE[{I|L}P]VT{M(Oxidation (M))|F} 3.633 - 88 + NaN NaN 128407.4 NaN 6406 2552 8957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8961 45.948 NaN 49897 35 0 4777.5 0.261 + 583 APELESKESVL 11 38 601.3192145064174 1200.6238760796348 2 601.3195190429688 MULTI HCD FTMS 0 0 0 8957 16979.955078125 0.22753527610123706 7 -0.184478759765625 4 Unmodified _APELESKESVL_ ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4 2.282774691075616 0.408909192180357 2 Q 1 11 6.9897 0 0 0.58217 0 0 276.2805666087348 793.2598971002561 1069.540463708991 0 0 0 0 0 0 0 0 0 Q 0.58217 - 3 + NaN NaN 87265.2 NaN 6407 2552 8957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8962 45.952 NaN 99551 35 0 22724 0.264 + 26336 SSDPGQPVL 9 33 450.2268445248975 898.439136116595 2 450.2268371582031 MULTI HCD FTMS 0 0 0 8957 22482.94921875 0.23789449032667762 -6 0.15452957153320312 5 Unmodified _SSDPGQPVL_ ENSG00000137393|ENST00000259939|RNF144B;nc|ENSG00000137393|Q7Z419-2|RNF144B 6.2057823575117 0.30397260197431997 2 V 1 8 1.5938 0 0 0.1774 0 0 407.29422142108564 389.0548494928344 796.3490709139201 0 0 0 0 0 0 0 0 0 + V 0.1774 + + 1 + NaN NaN 94339.6 NaN 6408 2552 8957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8963 45.955 NaN 75055 35 0 8306.8 0.261 -1 RYCMQLAQI 9 38 571.278135556781 1140.5417181803618 2 571.7796630859375 MULTI HCD FTMS 0 0 0 8957 10183.287109375 0.5467784404662628 -6 0.15452957153320312 6 Oxidation (M) _RYCM(Oxidation (M))QLAQI_ CON__P02533;ENSG00000186847|ENST00000167586|KRT14 7.289230182591677 0.29575926068275815 2 AQ{I|L} 3 -1 28.94 0 0 2.5374 0 0 810.3527088849625 0 810.3527088849625 0 26.175952772115174 0 0 0 0 0 0 0.4247425010840047 AQ{I|L} 2.5374 + + 13 NaN NaN 93284.7 NaN 6409 2552 8957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8965 45.96 NaN 919420 35 0 90372 0.327 + 26914 SYLDRTEQL 9 86 562.7825871337141 1123.550621334228 2 562.7827758789062 MULTI HCD FTMS 0 0 0 8964 509414.46875 0.659188263249527 3 -0.075714111328125 1 Unmodified _SYLDRTEQL_ ENSG00000065268|ENST00000585809|WDR18 117.83759599426817 0.001662893820975323 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L} 9 0 + 86.807 0 0 7.7261 7.7261 91.599 0 0 0 5.6424927368725974 73.60715032836858 5.6424927368725974 9.208187539523749 0 2.548455006504028 0 1.1237125054200234 0.3252574989159953 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTE[AG]{I|L};[Y{I|L}]SDRTEQ{I|L};[Y{I|L}]SDRTE[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DR[MN]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}REVTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}REVTE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}Q[YT]TEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}C[R{I|L}]EQ{I|L};{[QN]|[E{I|L}]|[KN]}[AG][YT]TEQ{I|L} 7.7261;6.9066;6.6997;5.8802;5.3841;5.2938;4.4742;4.435;4.0257;3.6154 +;-;-;-;-;-;-;-;-;- + 1192 NaN NaN 230597.4 NaN 6410 2553 8964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8966 45.964 NaN 269580 35 0 44842 0.261 + 23659 RPYDAEVSL 9 58 525.2669583352834 1048.5193637373668 2 525.2666625976562 MULTI HCD FTMS 0 0 0 8964 144983.359375 1 0 0 2 Unmodified _RPYDAEVSL_ ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant 24.990960013464015 0.14443998892849796 2 EVS{I|L} 4 5 46.186 0 0 4.4048 0 0 602.281541892775 0 602.281541892775 0 41.5815315012393 0 0 0 1 0 0.4247425010840047 0 + EVS{I|L} 4.4048 + + 80 NaN NaN 123698.6 NaN 6411 2553 8964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8967 45.968 NaN 286460 35 0 68738 0.263 + 20159 NYKKFYEAF 9 52 403.86956941447113 1208.5868788436135 3 403.86944580078125 MULTI HCD FTMS 0 0 0 8964 56585.59375 0.6526751417930265 -2 0.0460052490234375 3 Unmodified _NYKKFYEAF_ ENSG00000096384|ENST00000371646|HSP90AB1 27.628801355627647 0.12213550946336599 2 A{M(Oxidation (M))|F} 2 7 22.959 0 0 1.8996 0 0 972.4713983522057 0 972.4713983522057 0 17.47425010840047 0 0 0 0.5 0 0 0 + A{M(Oxidation (M))|F} 1.8996 + + 24 + NaN NaN 127331 NaN 6412 2553 8964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8968 45.971 NaN 63329 35 0 5432.5 0.261 + 33160 YENQYMNKI 9 41 601.779217512943 1201.5438820926859 2 601.7789306640625 MULTI HCD FTMS 0 0 0 8964 36985.90234375 0.6772620031650033 12 -0.33634185791015625 4 Unmodified _YENQYMNKI_ tr|U7SV09|U7SV09_FUSNUAdenosylcobinamidekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01082PE=3SV=1 7.289230182591677 0.29575926068275815 2 E 1 8 6.9897 0 0 0.58173 0 0 276.21083832700134 793.2632540338499 1069.4740923608513 0 0 0 0 0 0 0 0 0 + E 0.58173 + + 4 + NaN NaN 108883.6 NaN 6413 2553 8964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8969 45.975 NaN 62265 35 0 4687.4 0.261 + 20160 NYKKFYEAF 9 31 605.3005768030507 1208.5866006729013 2 605.3013916015625 MULTI HCD FTMS 0 0 0 8964 40262.31640625 0.6830918423794439 -4 0.09857177734375 5 Unmodified _NYKKFYEAF_ ENSG00000096384|ENST00000371646|HSP90AB1 5.40270961882225 0.3100604913328303 2 [YN]K 3 6 28.952 0 0 2.3956 0 0 0 800.3642672174436 800.3642672174436 9.488474775526186 0 0 0 0 0 2 0 0 + [YN]K 2.3956 + + 11 + NaN NaN 112307.9 NaN 6414 2553 8964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8970 45.978 NaN 47596 35 0 6097.7 0.263 -1 LHHVACNI 8 39 482.24497676229953 962.4754005913991 2 482.24432373046875 MULTI HCD FTMS 0 0 0 8964 8825.91015625 0.4425324811727155 -1 0.02300262451171875 6 Carbamidomethyl (C) _LHHVAC(Carbamidomethyl (C))NI_ ENSG00000164008|ENST00000372525|C1orf50;ENST00000464081.1_2_1:43232977-43241062:+|nuORF 2.577480529830294 0.5381683276125971 2 N{I|L} 2 -1 19.464 0 0 2.0223 0 0 717.3513050763687 0 717.3513050763687 0 18.979400086720375 0 0 0 0 0 0 0 N{I|L} 2.0223 + + 2 NaN NaN 91792.7 NaN 6415 2553 8964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8972 45.983 NaN 221700 35 0 34654 0.327 + 23660 RPYDAEVSL 9 53 525.2669583352834 1048.5193637373668 2 525.2669067382812 MULTI HCD FTMS 0 0 0 8971 99644.96875 0.68728555593934 1 -0.019695281982421875 1 Unmodified _RPYDAEVSL_ ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant 20.41453444215458 0.18397929046831515 2 C(Carbamidomethyl (C))EVS{I|L} 5 5 44.97 0 0 4.2889 0 0 442.24766738105626 0 442.24766738105626 0 30.506484875809043 0 0 0 1 0 0.4247425010840047 0 C(Carbamidomethyl (C))EVS{I|L} 4.2889 - 85 NaN NaN 117781.2 NaN 6416 2554 8971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8973 45.988 NaN 119710 35 0 22442 0.261 + 14261 LCLAINPIF 9 43 502.28757738503856 NaN 0 502.2763366699219 PEAK HCD FTMS 0 0 0 8971 9922.7802734375 0.6709095402622238 3 -0.08235549926757812 2 Unmodified _LCLAINPIF_ REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|111|3|anti-sense 5.230669730166228 0.26989974671959066 2 A 1 -1 3.4949 0 0 0.34859 0 0 375.23801636602735 553.2563570611936 928.494373427221 0 0 0 0 0 0 0 0 0 A 0.34859 + + 3 + NaN NaN 97023 NaN 6417 2554 8971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8974 45.991 NaN 71484 35 0 8222.7 0.261 + 2271 DLLQMLDTL 9 41 531.2808756229659 1060.5471983127318 2 531.2803955078125 MULTI HCD FTMS 0 0 0 8971 32680.685546875 0.24178534382814218 16 -0.44602203369140625 3 Unmodified _DLLQMLDTL_ ENSG00000168000|ENST00000360796|BSCL2;nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2 3.5964929083625545 0.32375295897743744 2 V[EP] 3 9 8.9524 0 0 0.84413 0 0 717.3942738263687 0 717.3942738263687 0 7.3586311141647816 0 0 0 0 0 0 0 V[EP] 0.84413 - 4 NaN NaN 114098.5 NaN 6418 2554 8971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8975 45.994 NaN 74384 35 0 11799 0.261 -1 RYCMQLAQI 9 44 571.278135556781 1140.5417181803618 2 571.2778930664062 MULTI HCD FTMS 0 0 0 8971 11216.705078125 0.3612130947013763 -4 0.10525894165039062 4 Oxidation (M) _RYCM(Oxidation (M))QLAQI_ CON__P02533;ENSG00000186847|ENST00000167586|KRT14 10.823927491677226 0.26684000660059787 2 AQ{I|L} 3 -1 30.445 0 0 2.6694 0 0 810.3493519513687 0 810.3493519513687 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 AQ{I|L} 2.6694 + + 8 NaN NaN 98305.4 NaN 6419 2554 8971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8976 45.998 NaN 59965 35 0 6082.4 0.262 -1 KMCFFAHRYT 10 52 454.2155577009208 1359.6248437029624 3 453.8797302246094 MULTI HCD FTMS 0 0 0 8971 15536.9150390625 0.9403839367883862 2 -0.0526885986328125 5 Carbamidomethyl (C) _KMC(Carbamidomethyl (C))FFAHRYT_ ENST00000510629.1_1_5:57752724-57753235:-|nuORF 1.4551175022131473 0.4676015363898197 2 A 1 -1 3.9794 0 0 0.29268 0 0 713.2980137242499 572.2591036432249 1285.5571173674748 0 0 0 0 0 0 0 0 0 A 0.29268 + + 9 + NaN NaN 95311.2 NaN 6420 2554 8971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8978 46.003 NaN 611950 35 0 95336 0.327 + 7586 FYHDRFKVF 9 72 420.21706280382045 1257.6293590116613 3 420.2170104980469 MULTI HCD FTMS 0 0 0 8977 176791.75 0.8092806112917194 4 -0.11875534057617188 1 Unmodified _FYHDRFKVF_ ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF;nc|ENSG00000100504|P06737-2|PYGL 47.7319792270244 0.034743597693959835 2 DHYE 4 8 51.3 0 0 4.0791 0 0 695.4107951580825 0 695.4107951580825 0 11.171597200580834 0 0 0 1.1747425010840047 0 0.7614393726401688 0 DHYE 4.0791 - 168 NaN NaN 181110.8 NaN 6421 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8979 46.007 NaN 73959 35 0 7561.8 0.261 -1 TPEKVFVVM 9 41 533.286860684963 1064.559168436726 2 533.2869873046875 MULTI HCD FTMS 0 0 0 8977 36272.51953125 0.6125450366566623 -1 0.019695281982421875 2 Oxidation (M) _TPEKVFVVM(Oxidation (M))_ ENSG00000105287|ENST00000291281|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 15.248480904072842 0.22861284681709862 2 V[RH]VV{M(Oxidation (M))|F} 6 -1 36.119 0 0 3.3929 0 0 309.13191420722814 0 309.13191420722814 0 17.53591878376909 0 0 0 1.8494850021680094 0 0 0 V[RH]VV{M(Oxidation (M))|F} 3.3929 - 44 NaN NaN 92759.6 NaN 6422 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8980 46.011 NaN 192380 35 0 22565 0.262 + 5618 FLYIRKRRF 9 52 433.5994048491334 1297.7763851476002 3 433.5994567871094 MULTI HCD FTMS 0 0 0 8977 14304.6201171875 0.20449317228591832 33 -0.6140251159667969 3 Unmodified _FLYIRKRRF_ REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF 2.735195868890462 0.3302822318919627 2 {I|L}M 2 -1 19.464 0 0 1.4998 0 0 1035.6446540458408 0 1035.6446540458408 0 4.859856381998782 0 0 0 0 0 0 0 {I|L}M 1.4998 - 8 + NaN NaN 116867.8 NaN 6423 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8981 46.014 NaN 120230 35 0 9595.4 0.261 + 33397 YGNTLVEFR 9 48 549.7820486515097 1097.5495443698194 2 549.7830810546875 MULTI HCD FTMS 0 0 0 8977 27101.1640625 0.19392820805241562 -14 0.3217811584472656 4 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 16.149105407346934 0.22083165093524068 2 TN{[DS]|[MA]|[CV]|TT} 4 7 29.169 0 0 2.6576 0 0 662.3749055532163 0 662.3749055532163 0 4.731975075880328 0 0 0 1.4247425010840047 0 0 0.3494850021680094 TN{[DS]|[MA]|[CV]|TT} 2.6576 - 42 + NaN NaN 125076.5 NaN 6424 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8982 46.017 NaN 110560 35 0 12893 0.261 + 9189 HPLHEWTCL 9 47 568.2713262742591 1134.528099615318 2 568.7733154296875 MULTI HCD FTMS 0 0 0 8977 4737.1494140625 0.12043125783908804 10 -0.2936210632324219 5 Unmodified _HPLHEWTCL_ ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;nc|ENSG00000183091|P20929-4|NEB;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant 10.823927491677226 0.26684000660059787 2 HPT 3 6 29.693 0 0 2.6172 0 0 0 796.3463228815061 796.3463228815061 16.160743531280843 0 0 0 0 0.5 0 0.5 0 HPT 2.6172 - 38 + NaN NaN 119133.4 NaN 6425 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8983 46.021 NaN 129610 35 0 10867 0.261 + 26219 SPTEVVERL 9 51 515.2818874036813 1028.5492218741624 2 515.28076171875 MULTI HCD FTMS 0 0 0 8977 43267.66015625 0.736942130741729 -2 0.042720794677734375 6 Unmodified _SPTEVVERL_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 22.65808497894818 0.16459551161911185 2 [PS]TEVVER{I|L} 9 0 + 40.436 0 0 3.9313 3.9313 82.875 0 0 0 19.466584062177432 11.39506772603255 11.39506772603255 4.771212547196619 0 1.2302046884880937 0 0.5 0 + + [PS]TEVVER{I|L};[PS]TE[{I|L}V]DR{I|L};{[DS]|[MA]|[CV]|TT}[DP]VVER{I|L};{[DS]|[MA]|[CV]|TT}[DP][{I|L}V]DR{I|L} 3.9313;3.4675;1.8374;1.3735 +;-;-;- + 60 + NaN NaN 110517.3 NaN 6426 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8984 46.024 NaN 83763 35 0 14600 0.261 -1 LPSHGEDNM 9 41 508.21165871784456 NaN 0 508.21185302734375 PEAK HCD FTMS 0 0 0 8977 23002.4609375 0.6725549281991938 -10 0.24654388427734375 7 Oxidation (M) _LPSHGEDNM(Oxidation (M))_ CON__Q3Y5Z3 2.0597508629832335 0.2852655770354268 2 E 1 -1 5.4846 0 0 0.54066 0 0 228.99923188705787 653.3398531549436 882.3390850420014 0 0 0 0 0 0 0 0 0 E 0.54066 + + 1 + NaN NaN 97077.9 NaN 6427 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8985 46.027 NaN 182160 35 0 30693 0.262 + 24838 RYPSLWRRL 9 51 416.24347959564676 NaN 0 416.2436828613281 PEAK HCD FTMS 0 0 0 8977 26886.576171875 0.5001539055047813 -12 0.2924842834472656 8 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 4.897010918128616 0.2715166107592903 2 C(Carbamidomethyl (C)) 1 9 3.4949 0 0 0.42083 0 0 246.84473399422478 420.5768221490844 667.4215561433092 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.42083 - 7 + NaN NaN 112443.1 NaN 6428 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8986 46.031 NaN 57674 35 0 5381.2 0.261 + 9611 HSQNMRANSIQ 11 38 643.3054683598525 1284.596383786505 2 643.3052978515625 MULTI HCD FTMS 0 0 0 8977 11643.7861328125 0.36338717907253293 3 -0.08237075805664062 9 Unmodified _HSQNMRANSIQ_ ENSG00000153060|ENST00000283025|TEKT5 2.0860074813731053 0.4097721463192591 2 S[Q{I|L}] 3 8 10.458 0 0 0.81407 0 0 938.4103260724625 0 938.4103260724625 0 8.467874862246562 0 0 0 0 0 0 0 + S[Q{I|L}] 0.81407 + + 8 NaN NaN 95203.8 NaN 6429 2555 8977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8988 46.036 NaN 871390 35 0 122230 0.327 + 29967 VFIDKQTNL 9 104 539.3006506210714 1076.5867483089428 2 539.3007202148438 MULTI HCD FTMS 0 0 0 8987 404346.625 0.7660216319797519 2 -0.04937744140625 1 Unmodified _VFIDKQTNL_ ENSG00000048740|ENST00000633077|CELF2;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319-3|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 103.82355648334675 0.003950725192926219 2 V{M(Oxidation (M))|F}{I|L}DKQTN{I|L} 9 0 + 82.841 0 0 7.6948 7.6948 89.895 0 0 0 57.73140711643401 1.729597574963833 1.729597574963833 7.204486615126655 0 1.6549471895720984 0 1.0356668758921828 1.6883753548010496 + + V{M(Oxidation (M))|F}{I|L}DKQTN{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}VD{I|L}D{I|L};V{M(Oxidation (M))|F}{I|L}DK[AG]TN{I|L};[{M(Oxidation (M))|F}V]{I|L}DKQTN{I|L};{I|L}[{M(Oxidation (M))|F}V]DKQTN{I|L};[{M(Oxidation (M))|F}V]{I|L}DK[AG]TN{I|L};[{M(Oxidation (M))|F}V]EVKQTN{I|L};{I|L}[{M(Oxidation (M))|F}V]DK[AG]TN{I|L};[{M(Oxidation (M))|F}V]EKVQTN{I|L};[{M(Oxidation (M))|F}V]{I|L}[SG]VQTN{I|L} 7.6948;7.0256;6.8395;5.9584;5.3664;5.1031;4.709;4.5111;4.287;4.2866 +;-;-;+;-;-;-;-;-;- + 2138 + NaN NaN 217652.1 NaN 6430 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8989 46.04 NaN 784870 35 0 172040 0.262 + 25020 RYVRRLDFF 9 69 424.57186453097495 1270.693764193125 3 424.57177734375 MULTI HCD FTMS 0 0 0 8987 294346.90625 0.17359501599843655 17 -0.4242668151855469 2 Unmodified _RYVRRLDFF_ ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000151292|ENST00000696905|CSNK1G3;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1 24.990960013464015 0.14443998892849796 2 D{M(Oxidation (M))|F}E 3 7 27.096 0 0 2.1324 0 0 861.5281662696677 0 861.5281662696677 0 3.2699217471274977 0 0 0 0 0 0.805462187404089 0 D{M(Oxidation (M))|F}E 2.1324 - 40 NaN NaN 197703.2 NaN 6431 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8990 46.044 NaN 116310 35 0 20240 0.261 + -1 IMKLRMCM 8 51 529.2546654512602 1056.4947779693202 2 529.2545776367188 MULTI HCD FTMS 0 0 0 8987 26462.314453125 0.29514979619429066 23 -0.4783363342285156 3 2 Oxidation (M) _IMKLRM(Oxidation (M))CM(Oxidation (M))_ REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF 14.581692164780916 0.48650662947107914 2 E{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 -1 29.909 0 0 2.831 0 0 516.3011267015453 0 516.3011267015453 0 4.69273760456403 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.831 - 34 + NaN NaN 96264.5 NaN 6432 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8991 46.047 NaN 93432 35 0 11329 0.261 + 22577 QSSATLKMRL 10 44 567.8187277789915 1133.622902624783 2 567.8165283203125 MULTI HCD FTMS 0 0 0 8987 36746.4296875 0.13843167921227548 -7 0.174285888671875 4 Unmodified _QSSATLKMRL_ REV__ENSG00000283428|ENST00000638102|CCDC195 7.608950283845883 0.4350283211712914 2 N{I|L}QTVC(Carbamidomethyl (C)){I|L} 7 -1 48.091 0 0 4.2423 0 0 287.19554335761876 0 287.19554335761876 0 23.19676373184656 0 0 0 0 0 0 0 N{I|L}QTVC(Carbamidomethyl (C)){I|L} 4.2423 - 107 NaN NaN 102928 NaN 6433 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8992 46.05 NaN 70709 35 0 7329.6 0.261 + 29396 TYQQVQQTL 9 29 554.7853752804826 1107.5561976277652 2 554.7852783203125 MULTI HCD FTMS 0 0 0 8987 26188.21484375 0.35355706457767117 8 -0.23095321655273438 5 Unmodified _TYQQVQQTL_ ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42 4.897010918128616 0.31389406404703984 2 QMQ[WR] 5 7 22.218 0 0 2.0061 0 0 360.2003346173844 0 360.2003346173844 0 22.21848749616356 0 0 0 0 0 0 0 QMQ[WR] 2.0061 - 8 NaN NaN 95116.4 NaN 6434 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8993 46.054 NaN 65104 35 0 4987.2 0.261 -1 0 40 575.6618587327525 1723.9637467984576 3 575.6622924804688 MULTI HCD FTMS 0 0 0 8987 14097.0087890625 0.18941653301751613 11 -0.3263092041015625 6 NaN NaN 2 W 1 -1 6.9897 0 0 0.40544 0 0 356.17297755696865 1178.69016028264 1534.8631378396085 0 0 0 0 0 0 0 0 0 W 0.40544 - 3 + NaN NaN 94428 NaN 6435 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8994 46.057 NaN 44619 35 0 7684.2 0.262 + 33321 YFTVTCYS 8 32 492.21236525317113 NaN 0 492.212646484375 PEAK HCD FTMS 0 0 0 8987 9699.478515625 0.5551824378340326 1 -0.029666900634765625 7 Unmodified _YFTVTCYS_ ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21 2.8892196856762586 0.38822285293237185 2 Y 1 7 2.4743 0 0 0.25186 0 0 428.60788372724227 387.71259485416255 816.3204785814048 0 0 0 0 0 0 0 0 0 + Y 0.25186 + + 2 + NaN NaN 90927.8 NaN 6436 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8995 46.06 NaN 45624 35 0 6257.9 0.261 -1 WRSFCQKMAF 10 34 454.2155577009208 1359.6248437029624 3 454.2159118652344 MULTI HCD FTMS 0 0 0 8987 4286.72802734375 0.1393731327815783 7 -0.20124053955078125 8 Carbamidomethyl (C) _WRSFC(Carbamidomethyl (C))QKMAF_ ENST00000570962.1_1_17:53345105-53398237:+|nuORF 0.776531954647913 0.4711933975711956 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 0.99254 0 0 1194.5450077428045 0 1194.5450077428045 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.99254 + + 8 + NaN NaN 97980.2 NaN 6437 2556 8987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8997 46.065 NaN 458570 35 0 42218 0.327 + 9138 HPHDLVILM 9 66 545.789439405371 1089.564325877542 2 545.7894287109375 MULTI HCD FTMS 0 0 0 8996 184598.390625 0.884080397660052 -2 0.06266021728515625 1 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 70.71552829651908 0.008856681705782516 2 EV{I|L}{I|L}{M(Oxidation (M))|F} 5 5 63.8 0 0 5.8556 0 0 470.2269459455094 0 470.2269459455094 0 42.86552418841737 0 0 0 1.7614393726401687 0 1.274227503252014 0 EV{I|L}{I|L}{M(Oxidation (M))|F} 5.8556 - 459 NaN NaN 159142.3 NaN 6438 2557 8996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8998 46.07 NaN 226810 35 0 34886 0.261 + 24105 RYALQMEQL 9 67 584.2949896319406 1166.575426330681 2 584.2953491210938 MULTI HCD FTMS 0 0 0 8996 78207.03125 0.31464464720950225 14 -0.3729667663574219 2 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 49.52724829834842 0.03223213920720493 2 {I|L}Q{M(Oxidation (M))|F}EQ{I|L} 6 3 66.191 0 0 5.6739 0 0 390.199998924025 0 390.199998924025 0 43.00312209084183 0 0 0 1.7786596949921218 0 0 0.4247425010840047 + {I|L}Q{M(Oxidation (M))|F}EQ{I|L} 5.6739 + + 476 NaN NaN 120970.6 NaN 6439 2557 8996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 8999 46.074 NaN 79086 35 0 7531.1 0.261 + 12681 KWKENQADLK 10 43 630.3407163874036 1258.6668798416072 2 630.3408813476562 MULTI HCD FTMS 0 0 0 8996 41283.453125 0.7657432519035507 1 -0.019710540771484375 3 Unmodified _KWKENQADLK_ ENST00000334270.2_1_9:135278078-135282195:-|nuORF 4.5288652416199255 0.4513317009562028 2 V{I|L}HW[K{I|L}] 6 8 35.111 0 0 2.7895 0 0 464.20198256660314 0 464.20198256660314 0 32.34686519556558 0 0 0 1.9247425010840047 0 0 0 V{I|L}HW[K{I|L}] 2.7895 - 41 NaN NaN 96579.5 NaN 6440 2557 8996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9000 46.077 NaN 72091 35 0 6339.9 0.261 + -1 SMSAEVFSNKF 11 30 631.7898872655072 1261.5652215978143 2 631.7894287109375 MULTI HCD FTMS 0 0 0 8996 39091.53515625 0.574108939098093 -10 0.24663543701171875 4 Oxidation (M) _SM(Oxidation (M))SAEVFSNKF_ REV__ENSG00000042445|ENST00000295802|RETSAT 4.897010918128616 0.3974440401582579 2 KS{I|L}{M(Oxidation (M))|F} 4 -1 28.928 0 0 2.293 0 0 768.2794666974625 0 768.2794666974625 0 28.927900303521312 0 0 0 0 0 0 0 KS{I|L}{M(Oxidation (M))|F} 2.293 - 7 NaN NaN 113456.8 NaN 6441 2557 8996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9001 46.08 NaN 84206 35 0 4686.4 0.261 + 7114 FRRQRMQI 8 51 567.8187277789915 1133.622902624783 2 568.3191528320312 MULTI HCD FTMS 0 0 0 8996 21478.84765625 0.12219857676249915 -7 0.18761444091796875 5 Unmodified _FRRQRMQI_ CEP135-DCAF13|1|fusion;ENSG00000174799|ENST00000257287|CEP135;ENST00000515081.1_1_4:56820464-56832049:+|nuORF;nc|ENSG00000174799|Q66GS9-2|CEP135 8.593279151180031 0.5292430274356741 2 {I|L}QTVC(Carbamidomethyl (C)){I|L} 6 6 42.384 0 0 3.7388 0 0 401.23860366035314 0 401.23860366035314 0 30.929862658764264 0 0 0 0 0 0 0.4247425010840047 {I|L}QTVC(Carbamidomethyl (C)){I|L} 3.7388 - 57 NaN NaN 103046.9 NaN 6442 2557 8996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9003 46.085 NaN 204700 35 0 17300 0.327 + 18201 MPDLPEKL 8 62 479.74950118057643 957.4844494279529 2 479.7490539550781 MULTI HCD FTMS 0 0 0 9002 90754.7890625 0.35702802515955845 -11 0.2663459777832031 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 45.69961567697781 0.1577113171574352 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 0 + 45.693 0 0 4.7722 4.7722 91.029 0 0 0 18.430314954627818 12.715299873086607 12.715299873086607 45.692672072328904 0 1.6307196863200843 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.7722 + + 45 + NaN NaN 106382.8 NaN 6443 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9004 46.09 NaN 166090 35 0 26810 0.261 + 23577 RPDTLDPAL 9 43 499.26958960916204 996.5246262851241 2 499.2690734863281 MULTI HCD FTMS 0 0 0 9002 86891.1875 0.07684368374157917 14 -0.3624305725097656 2 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 20.41453444215458 0.18397929046831515 2 DPA{I|L} 4 5 45.433 0 0 4.5591 0 0 582.3138294904312 0 582.3138294904312 0 38.44335023848103 0 0 0 1.3494850021680094 0 0 0 + DPA{I|L} 4.5591 + + 69 NaN NaN 130307.2 NaN 6444 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9005 46.093 NaN 175380 35 0 51252 0.261 + 26337 SSDPGQPVL 9 36 450.2268445248975 898.439136116595 2 450.2267150878906 MULTI HCD FTMS 0 0 0 9002 94508.0703125 1 0 0 3 Unmodified _SSDPGQPVL_ ENSG00000137393|ENST00000259939|RNF144B;nc|ENSG00000137393|Q7Z419-2|RNF144B 13.90604991867851 0.24021115267848145 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 116657.1 NaN 6445 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9006 46.097 NaN 117410 35 0 15042 0.261 -1 MPLLRQEEL 9 57 572.8051026931881 1143.5956524531762 2 572.8052978515625 MULTI HCD FTMS 0 0 0 9002 48013.3828125 0.5919261015193928 -5 0.125091552734375 4 Oxidation (M) _M(Oxidation (M))PLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 24.990960013464015 0.14443998892849796 2 {I|L}PE{I|L} 4 -1 31.414 0 0 2.747 0 0 673.3375111310562 0 673.3375111310562 0 20.445312593723983 0 0 0 0.4247425010840047 0 0 0 {I|L}PE{I|L} 2.747 - 39 NaN NaN 111093.7 NaN 6446 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9007 46.1 NaN 136050 35 0 9722.8 0.261 + 24578 RYLNKSFVL 9 57 570.3318557746591 1138.649158616118 2 570.3323364257812 MULTI HCD FTMS 0 0 0 9002 44192.359375 0.565870100674988 -9 0.223663330078125 5 Unmodified _RYLNKSFVL_ ENSG00000132623|ENST00000378392|ANKEF1 21.536976647645854 0.1742816388551942 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVNKS{M(Oxidation (M))|F}V{I|L} 10 3 + 63.35 0 0 5.5636 5.5636 87.056 0 0 0 17.393732828543413 56.36046240493748 17.393732828543413 9.164539485499255 0 0.4247425010840047 1.5228787452803376 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVNKS{M(Oxidation (M))|F}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVGGKS{M(Oxidation (M))|F}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVNKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 5.5636;4.7588;3.3691 -;-;- 151 NaN NaN 116535 NaN 6447 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9008 46.103 NaN 89401 35 0 14935 0.261 + 9490 HPWEVMPEL 9 40 569.2735448636703 1136.5325367941405 2 569.27294921875 MULTI HCD FTMS 0 0 0 9002 39505.06640625 0.11478586736795711 67 -1.4201316833496094 6 Unmodified _HPWEVMPEL_ ENST00000494591.1_1_4:144346636-144346936:+|nuORF 7.289230182591677 0.29575926068275815 2 HP{M(Oxidation (M))|F} 3 6 29.693 0 0 2.6126 0 0 0 752.3318575494749 752.3318575494749 29.69273760456403 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F} 2.6126 - 6 + NaN NaN 115582.5 NaN 6448 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9009 46.107 NaN 132270 35 0 10632 0.261 + 18974 NAMEDAQTL 9 50 496.7212806745074 991.4280084158148 2 496.72137451171875 MULTI HCD FTMS 0 0 0 9002 33924.23828125 0.5147792524982303 -2 0.04937744140625 7 Unmodified _NAMEDAQTL_ ENSG00000196975|ENST00000394295|ANXA4;nc|ENSG00000196975|P09525|ANXA4 29.43715596616401 0.11383414875064776 2 {[QG]|[NA]}MEDAQT{I|L} 9 0 + 61.643 0 0 6.2176 6.2176 88.907 0 0 0 21.751736484954378 51.185917565062965 21.751736484954378 9.208187539523749 0 1.2134679910804405 1.6989700043360187 0 0 + + {[QG]|[NA]}MEDAQT{I|L};{[QG]|[NA]}MEDA[AG]T{I|L};{[VA]|[{I|L}G]}[C(Carbamidomethyl (C))D]DAQT{I|L};{[QG]|[NA]}MN[NS][WR];{[VA]|[{I|L}G]}[C(Carbamidomethyl (C))D]DA[AG]T{I|L};{[QG]|[NA]}MGG[NS][WR] 6.2176;5.2889;2.9679;2.8595;2.0392;1.9253 +;-;-;-;-;- + 138 NaN NaN 110706.9 NaN 6449 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9010 46.11 NaN 89044 35 0 8974.1 0.261 + 31161 VTYSSVGHSL 10 53 525.2669583352834 1048.5193637373668 2 525.2673950195312 MULTI HCD FTMS 0 0 0 9002 29108.193359375 0.20076920196121645 5 -0.15186309814453125 8 Unmodified _VTYSSVGHSL_ REV__ENSG00000155719|ENST00000646100|OTOA;REV__nc|ENSG00000155719|Q7RTW8|OTOA 6.2057823575117 0.44245551207394906 2 VS{I|L} 3 -1 31.198 0 0 2.9754 0 0 731.3222523419937 0 731.3222523419937 0 24.20818753952375 0 0 0 0.5 0 0 0 VS{I|L} 2.9754 - 68 NaN NaN 95490.7 NaN 6450 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9011 46.113 NaN 200320 35 0 31129 0.261 + 1446 AYSHLRYVF 9 54 578.3003459567077 1154.5861389802153 2 578.8023681640625 MULTI HCD FTMS 0 0 0 9002 38158.19140625 0.8698344851880102 -1 0.019710540771484375 9 Unmodified _AYSHLRYVF_ ENSG00000083857|ENST00000441802|FAT1;FAT1-MTNR1A|1|fusion;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant 18.373094154950223 0.20161688160436167 2 YV{M(Oxidation (M))|F} 3 6 23.188 0 0 2.0083 0 0 727.3814564435562 0 727.3814564435562 0 2.420007495471612 0 0 0 0 0 0 0 + YV{M(Oxidation (M))|F} 2.0083 + + 25 NaN NaN 113287.9 NaN 6451 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9012 46.117 NaN 171140 35 0 11599 0.261 + 9151 HPIDIETSV 9 59 505.76121454724046 1009.5078761612809 2 505.7607421875 MULTI HCD FTMS 0 0 0 9002 23988.83984375 0.5001818319390713 5 -0.15186309814453125 10 Unmodified _HPIDIETSV_ DIP2B|p.R1485Q|1|0.42|ENSG00000066084|chr12:50741515-50741515|G/A|missense_variant;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF;nc|ENSG00000160305|Q14689-6|DIP2A 19.256988751693697 0.19398022840297344 2 STE{I|L}PVT{M(Oxidation (M))|F} 8 8 33.752 0 0 3.3434 0 0 117.08277958100594 0 117.08277958100594 0 21.445247061488857 0 0 0 0.6435078169319297 0 0.5 0 STE{I|L}PVT{M(Oxidation (M))|F} 3.3434 - 67 + NaN NaN 114002.1 NaN 6452 2558 9002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9014 46.122 NaN 167900 35 0 12585 0.327 + 26915 SYLDRTEQL 9 67 562.7825871337141 1123.550621334228 2 562.78271484375 MULTI HCD FTMS 0 0 0 9013 71236.8125 0.09218126612409297 9 -0.26659393310546875 1 Unmodified _SYLDRTEQL_ ENSG00000065268|ENST00000585809|WDR18 49.52724829834842 0.03223213920720493 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L} 9 0 + 40.958 0 0 3.6454 3.6454 85.223 0 0 0 5.6424927368725974 35.47357136519765 5.6424927368725974 9.208187539523749 0 1.4826446478103827 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTEQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DRTE[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AA{[QN]|[E{I|L}]|[KN]}TEQ{I|L} 3.6454;2.8259;1.8377 +;-;- + 128 NaN NaN 107601.4 NaN 6453 2559 9013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9015 46.126 NaN 178560 35 0 37423 0.264 + 21954 QEKDKQTDAF 10 43 403.8624577236808 NaN 0 403.8694763183594 PEAK HCD FTMS 0 0 0 9013 2860.765869140625 0.6625961957015293 1 -0.019802093505859375 2 Unmodified _QEKDKQTDAF_ REV__ENSG00000048740|ENST00000633077|CELF2;REV__ENSG00000149187|ENST00000687097|CELF1;REV__ENST00000532146.1_1_11:47504033-47505052:-|nuORF;REV__nc|ENSG00000048740|O95319-2|CELF2;REV__nc|ENSG00000048740|O95319-3|CELF2;REV__nc|ENSG00000048740|O95319-4|CELF2;REV__nc|ENSG00000048740|O95319-5|CELF2;REV__nc|ENSG00000048740|O95319|CELF2;REV__nc|ENSG00000149187|Q92879-2|CELF1;REV__nc|ENSG00000149187|Q92879-3|CELF1;REV__nc|ENSG00000149187|Q92879-4|CELF1;REV__nc|ENSG00000149187|Q92879-5|CELF1;REV__nc|ENSG00000149187|Q92879-6|CELF1;REV__nc|ENSG00000149187|Q92879|CELF1 5.731851221503515 0.33527861879838866 2 A 1 -1 3.9794 0 0 0.4939 0 0 569.5953550452148 162.0560244195922 731.651379464807 0 0 0 0 0 0 0 0 0 A 0.4939 + + 2 + NaN NaN 115068.2 NaN 6454 2559 9013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9016 46.13 NaN 68036 35 0 7398.4 0.261 + -1 SMSAEVFSNKF 11 36 631.7898872655072 1261.5652215978143 2 631.78955078125 MULTI HCD FTMS 0 0 0 9013 33619.71484375 0.4937482947287067 -8 0.20748138427734375 3 Oxidation (M) _SM(Oxidation (M))SAEVFSNKF_ REV__ENSG00000042445|ENST00000295802|RETSAT 8.155526934196011 0.3831532958467648 2 KS{I|L}{M(Oxidation (M))|F} 4 -1 33.175 0 0 2.6297 0 0 768.2767201154312 0 768.2767201154312 0 23.883578386120234 0 0 0 0 0 0.4247425010840047 0 KS{I|L}{M(Oxidation (M))|F} 2.6297 - 8 NaN NaN 93280.7 NaN 6455 2559 9013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9017 46.133 NaN 334490 35 0 75739 0.264 -1 VYCSYLRGIL 10 67 415.2201270705993 NaN 0 415.2275085449219 PEAK HCD FTMS 0 0 0 9013 12366.521484375 1 0 0 4 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))SYLRGIL_ ENST00000336032.3_1_6:89793930-89794134:+|nuORF 7.477065608646677 0.333784957163546 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.84373 0 0 250.17724531980417 428.15732752017817 678.3345728399823 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.84373 - 13 + NaN NaN 127204 NaN 6456 2559 9013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9018 46.136 NaN 76353 35 0 12341 0.261 + 12619 KVPPAINQF 9 43 507.2924414992462 1012.5703300652924 2 507.2928771972656 MULTI HCD FTMS 0 0 0 9013 27861.33203125 0.32311771105212367 -8 0.20748138427734375 5 Unmodified _KVPPAINQF_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF 19.256988751693697 0.19398022840297344 2 {[QV]|[N{I|L}]|[RA]|[KV]}P 3 6 15.458 0 0 1.5266 0 0 0 685.3356417291624 685.3356417291624 15.45757490560675 0 0 0 0 0.5 0 0 0 + {[QV]|[N{I|L}]|[RA]|[KV]}P 1.5266 + + 2 + NaN NaN 94765.8 NaN 6457 2559 9013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9020 46.141 NaN 324840 35 0 52649 0.327 -1 FYMLKWLLE 9 58 420.22419989197914 NaN 0 420.21685791015625 PEAK HCD FTMS 0 0 0 9019 13218.34765625 0.7708275269886116 3 -0.09567642211914062 1 Oxidation (M) _FYM(Oxidation (M))LKWLLE_ ENSG00000257315|ENST00000550078|ZBED6 7.101721422024254 0.2608328913336659 2 VE 2 -1 9.464 0 0 1.1288 0 0 56.01649123776571 551.2669161432249 607.2834073809906 0 0 0 0 0 0 0 0 0 VE 1.1288 - 15 + NaN NaN 125380.7 NaN 6458 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9021 46.146 NaN 117570 35 0 49072 0.261 -1 0 39 458.22868881888263 457.22141235228264 1 458.228515625 MULTI HCD FTMS 0 0 0 9019 70784.0390625 0.1436372353413831 9 -0.2651100158691406 2 NaN NaN 2 YY{I|L} 3 -1 + 37.447 0 0 8.1902 8.1902 96.443 0 0 0 37.447274948966935 37.447274948966935 37.447274948966935 37.447274948966935 0 0 1.6989700043360187 0 0 YY{I|L} 8.1902 - 5 NaN NaN 96642.3 NaN 6459 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9022 46.149 NaN 261980 35 0 19527 0.261 + 11124 IYIKQIKTF 9 64 577.3526782878151 1152.6908036424302 2 577.3526000976562 MULTI HCD FTMS 0 0 0 9019 108617.734375 0.5984624890352737 -1 0.019802093505859375 3 Unmodified _IYIKQIKTF_ ENSG00000103479|ENST00000262133|RBL2 87.25819977447905 0.004597812622239197 2 {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F} 9 0 + 92.974 0 0 8.0658 8.0658 90.905 0 0 0 8.19599075987611 8.19599075987611 8.19599075987611 8.19599075987611 0 2.9604093769761874 1.6989700043360187 1.079689690656103 0 + + {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}KQ{I|L}KT{M(Oxidation (M))|F};{I|L}Y{I|L}K[AG]{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}K[AG]{I|L}KT{M(Oxidation (M))|F} 8.0658;7.3548;7.267;6.556 +;+;-;- + 192 + NaN NaN 114000.1 NaN 6460 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9023 46.153 NaN 95646 35 0 9753.5 0.261 -1 VVLMPTVYQ 9 47 533.286860684963 1064.559168436726 2 533.2869873046875 MULTI HCD FTMS 0 0 0 9019 49327.2265625 0.8330038330220396 4 -0.12538909912109375 4 Oxidation (M) _VVLM(Oxidation (M))PTVYQ_ ENSG00000078902|ENST00000317204|TOLLIP;nc|ENSG00000078902|Q9H0E2-2|TOLLIP 19.256988751693697 0.19398022840297344 2 [HA]TVT 5 -1 38.456 0 0 3.6124 0 0 0 552.2908419244749 552.2908419244749 7.486512420283233 0 0 0 0 1.6237125054200234 0 0 0 [HA]TVT 3.6124 - 44 + NaN NaN 95716 NaN 6461 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9024 46.156 NaN 95845 35 0 7622.9 0.261 + 26220 SPTEVVERL 9 41 515.2818874036813 1028.5492218741624 2 515.2823486328125 MULTI HCD FTMS 0 0 0 9019 37641.546875 0.6411172145270303 3 -0.09567642211914062 5 Unmodified _SPTEVVERL_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 22.65808497894818 0.16459551161911185 2 [PS]TE[{I|L}V]DR{I|L} 9 2 + 35.876 0 0 3.488 3.488 81.406 0 0 0 9.656089946244506 11.395067726032558 9.656089946244506 2.0289375146764854 0 0.7742275032520141 0 0.5 0 [PS]TE[{I|L}V]DR{I|L};[PS]TEVVER{I|L};{[DS]|[MA]|[CV]|TT}[DP][{I|L}V]DR{I|L};{[DS]|[MA]|[CV]|TT}[DP]VVER{I|L};{[DS]|[MA]|[CV]|TT}[YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}R{I|L} 3.488;3.2907;1.7642;1.567;0.03805 -;+;-;-;- + 38 + NaN NaN 92610.2 NaN 6462 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9025 46.159 NaN 122730 35 0 14501 0.261 + 25934 SPDAEEPQL 9 45 493.2271079145305 984.439662895861 2 493.2266845703125 MULTI HCD FTMS 0 0 0 9019 45460.0546875 0.9185681928970678 -2 0.056186676025390625 6 Unmodified _SPDAEEPQL_ nc|ENSG00000148396|O15027-5|SEC16A 19.256988751693697 0.19398022840297344 2 [QP]G{[C(Carbamidomethyl (C))G]|[NC]}EPQ{I|L} 9 4 [QP]G{[C(Carbamidomethyl (C))G]|[NC]}E + + 27.76 3.1336 0.4988 2.8198 2.8198 60.016 0 0 0 0 11.561734207603749 0 0 0 0.9247425010840047 0 0 0.805462187404089 [QP]G{[C(Carbamidomethyl (C))G]|[NC]}EPQ{I|L} 2.8198 - 58 + NaN NaN 95764.9 NaN 6463 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9026 46.163 NaN 119200 35 0 7745.2 0.261 + 6856 FPTIHGNDEV 10 56 564.7698566199956 1127.5251603067911 2 564.7698364257812 MULTI HCD FTMS 0 0 0 9019 63492.93359375 1 0 0 7 Unmodified _FPTIHGNDEV_ ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF 14.405379775768559 0.37636895476610294 2 PE 2 8 20.701 0 0 1.836 0 0 883.4003163068375 0 883.4003163068375 0 1.2371250542002343 0 0 0 0.4247425010840047 0 0 0 PE 1.836 - 38 NaN NaN 104058.8 NaN 6464 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9027 46.166 NaN 68141 35 0 9682.3 0.261 + 17664 MADEFHSTL 9 38 525.7319081027556 1049.449263272311 2 525.7319946289062 MULTI HCD FTMS 0 0 0 9019 31546.138671875 1 0 0 8 Unmodified _MADEFHSTL_ ENST00000434600.6_2_X:119590527-119590569:-|nuORF 29.081581746732265 0.1154664336125038 2 MADE{M(Oxidation (M))|F} 5 4 44.949 0 0 4.2831 0 0 0 453.20868860416255 453.20868860416255 37.95880017344075 0 0 0 0 1.3494850021680094 0 0 0 + MADE{M(Oxidation (M))|F} 4.2831 + + 39 + NaN NaN 94999.5 NaN 6465 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9028 46.169 NaN 123540 35 0 11887 0.261 + -1 VENDDDMV 8 53 476.6829010935789 951.3512492539578 2 476.6830139160156 MULTI HCD FTMS 0 0 0 9019 12091.9892578125 0.48416392336239494 4 -0.12538909912109375 9 Oxidation (M) _VENDDDM(Oxidation (M))V_ REV__ENSG00000181789|ENST00000314797|COPG1 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.6276 0 0 786.2724051150891 0 786.2724051150891 0 8.91773141135175 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6276 + + 20 + NaN NaN 103106.9 NaN 6466 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9029 46.173 NaN 102810 35 0 12547 0.261 -1 0 48 488.4250796527504 2924.5068191169025 6 488.7589111328125 MULTI HCD FTMS 0 0 0 9019 11930.3798828125 0.17550078028382127 -8 0.20428085327148438 10 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.18754 0 0 2080.0996039212714 728.3001704301474 2808.3997743514187 0 0 0 0 0 0 0 0 0 {I|L} 0.18754 - 3 + NaN NaN 111863.7 NaN 6467 2560 9019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9031 46.178 NaN 70455 35 0 7592.3 0.327 -1 VVLMPTVYQ 9 42 533.286860684963 1064.559168436726 2 533.2871704101562 MULTI HCD FTMS 0 0 0 9030 44970.4375 0.7594294149644463 5 -0.14505386352539062 1 Oxidation (M) _VVLM(Oxidation (M))PTVYQ_ ENSG00000078902|ENST00000317204|TOLLIP;nc|ENSG00000078902|Q9H0E2-2|TOLLIP 10.823927491677226 0.26684000660059787 2 [HA]TVT 5 -1 31.466 0 0 2.9558 0 0 0 552.2938326471311 552.2938326471311 11.773174902439578 0 0 0 0 1.274227503252014 0 0 0 [HA]TVT 2.9558 - 49 + NaN NaN 102234.3 NaN 6468 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9032 46.182 NaN 129040 35 0 9219.7 0.261 + 33398 YGNTLVEFR 9 54 549.7820486515097 1097.5495443698194 2 549.7830200195312 MULTI HCD FTMS 0 0 0 9030 51036.44921875 0.3652022887107414 -8 0.21756744384765625 2 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 27.628801355627647 0.12213550946336599 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 39.125 0 0 3.5647 0 0 563.3041249005875 0 563.3041249005875 0 17.35354666808 0 0 0 1.4247425010840047 0 0.3807196863200844 0.4247425010840047 VTN{[DS]|[MA]|[CV]|TT} 3.5647 - 57 NaN NaN 102037.4 NaN 6469 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9033 46.186 NaN 174280 35 0 26964 0.263 + 10403 INRKRLWNF 9 43 416.2436918347977 1245.7092461045931 3 416.5782470703125 MULTI HCD FTMS 0 0 0 9030 18247.392578125 0.018018394549496136 100 -2.2983055114746094 3 Unmodified _INRKRLWNF_ ENSG00000157181|ENST00000287859|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.243 0 0 1080.6304019657243 0 1080.6304019657243 0 11.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.243 + + 2 + NaN NaN 108014 NaN 6470 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9034 46.189 NaN 51389 35 0 6132.9 0.261 + 16756 LYDEVCKKL 9 37 555.7958712644645 1109.577189595729 2 555.7971801757812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LYDEVCKKL_ REV__ENSG00000013810|ENST00000313288|TACC3;REV__ENST00000484264.1_1_4:1746256-1746676:+|nuORF;REV__FGFR3-TACC3|1|fusion;REV__FGFR3-TACC3|10|fusion;REV__FGFR3-TACC3|11|fusion;REV__FGFR3-TACC3|12|fusion;REV__FGFR3-TACC3|13|fusion;REV__FGFR3-TACC3|14|fusion;REV__FGFR3-TACC3|15|fusion;REV__FGFR3-TACC3|2|fusion;REV__FGFR3-TACC3|3|fusion;REV__FGFR3-TACC3|4|fusion;REV__FGFR3-TACC3|5|fusion;REV__FGFR3-TACC3|6|fusion;REV__FGFR3-TACC3|7|fusion;REV__FGFR3-TACC3|8|fusion;REV__FGFR3-TACC3|9|fusion 6.2057823575117 0.30397260197431997 2 [Y{I|L}]V 3 -1 15.458 0 0 1.3931 0 0 0 731.3380221002561 731.3380221002561 8.467874862246562 0 0 0 0 0.5 0 0 0 [Y{I|L}]V 1.3931 - 13 + NaN NaN 89522.5 NaN 6471 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9035 46.192 NaN 47451 35 0 4905.5 0.261 -1 MLAFSEMPKP 10 27 604.7872554690773 NaN 0 604.7970581054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MLAFSEM(Oxidation (M))PKP_ nc|ENSG00000153485|Q8N6I4-3|LYSET 1.844237919475145 0.33860587697544825 2 W 1 -1 2.4743 0 0 0.2049 0 0 620.2792706043671 398.1689547174438 1018.4482253218109 0 0 0 0 0 0 0 0 0 W 0.2049 - 1 + NaN NaN 101967.5 NaN 6472 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9036 46.196 NaN 36460 35 0 4046.4 0.261 + 23669 RQETFVYEM 9 30 601.779217512943 1201.5438820926859 2 601.7786254882812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _RQETFVYEM_ ENSG00000164975|ENST00000380821|SNAPC3;ENST00000461041.1_1_9:15423144-15433670:+|nuORF 1.4819007175156935 0.3397831423917744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91323.3 NaN 6473 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9037 46.199 NaN 35837 35 0 2995.7 0.261 + 14862 LKIVYRRFR 9 30 625.8985699997113 NaN 0 626.17236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LKIVYRRFR_ ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93564.4 NaN 6474 2561 9030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9039 46.204 NaN 532090 35 0 111530 0.327 + 23700 RQNLRKYFF 9 69 424.57186453097495 1270.693764193125 3 424.5717468261719 MULTI HCD FTMS 0 0 0 9038 180816.15625 0.10663874112654972 23 -0.3680076599121094 1 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 17.11289562659939 0.2125047172822487 2 D{M(Oxidation (M))|F}E 3 -1 27.848 0 0 2.1916 0 0 861.5368948527342 0 861.5368948527342 0 3.6523403976488567 0 0 0 0 0 0.8807196863200843 0 D{M(Oxidation (M))|F}E 2.1916 - 25 NaN NaN 171063.1 NaN 6475 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9040 46.208 NaN 413300 35 0 36387 0.261 + 9139 HPHDLVILM 9 59 545.789439405371 1089.564325877542 2 545.789306640625 MULTI HCD FTMS 0 0 0 9038 144084.390625 0.6900503570430642 3 -0.092376708984375 2 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 81.86404211737425 0.005249203329642222 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HVEV{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 71.269 0 0 6.5411 6.5411 86.486 0 0 0 3.7822199435717607 9.47621246364342 3.7822199435717607 3.7822199435717607 0 2.2302046884880937 0 1.5356668758921828 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HVEV{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[NG]WV{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG][NP]V{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP][NP]{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PG]V[NP]{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[NG]WKK{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HVEKK{[ES]|[DT]|[{I|L}C]} 6.5411;6.1939;4.9825;4.341;4.2222;0.95283;0.52031 -;-;-;-;-;-;- 377 NaN NaN 150441.5 NaN 6476 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9041 46.212 NaN 228020 35 0 16870 0.261 + 22630 QVITKEYEL 9 82 561.8057606080206 1121.596968282841 2 561.8059692382812 MULTI HCD FTMS 0 0 0 9038 82161.8203125 0.6508593130780619 -2 0.06268692016601562 3 Unmodified _QVITKEYEL_ ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF;nc|ENSG00000136631|Q9NRW7-2|VPS45 66.45667989310934 0.010234776021261575 2 E{I|L} 2 7 21.186 0 0 1.8889 0 0 861.4567127912125 0 861.4567127912125 0 2.914478256039672 0 0 0 0.3494850021680094 0 0.2742275032520141 0 + E{I|L} 1.8889 + + 106 NaN NaN 123232.9 NaN 6477 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9042 46.215 NaN 143480 35 0 22896 0.261 -1 RYALQMEQL 9 58 584.2949896319406 1166.575426330681 2 584.2950439453125 MULTI HCD FTMS 0 0 0 9038 52991.08984375 0.21319518849699026 19 -0.3258781433105469 4 Oxidation (M) _RYALQM(Oxidation (M))EQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 26.020703789607367 0.13554323117744113 2 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L} 9 -1 + 70.367 0 0 6.0319 6.0319 88.584 0 0 0 7.147642715192504 63.3771376077312 7.147642715192504 9.208187539523749 0 1.274227503252014 0 0 0 [YR]A{I|L}Q{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}EQ{I|L};[YR]A{I|L}Q{M(Oxidation (M))|F}E[AG]{I|L};[YR]A{I|L}[AG]{M(Oxidation (M))|F}E[AG]{I|L};[YR][{M(Oxidation (M))|F}V]{[NV]|[RG]}EQ{I|L} 6.0319;5.2426;5.2426;4.457;1.983 +;-;-;-;- + 106 NaN NaN 100311.1 NaN 6478 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9043 46.219 NaN 163320 35 0 16934 0.261 + 29981 VFIKDANASI 10 57 539.3006506210714 1076.5867483089428 2 539.3012084960938 MULTI HCD FTMS 0 0 0 9038 52649.30859375 0.09974241603127008 8 -0.2250823974609375 5 Unmodified _VFIKDANASI_ REV__tr|U7SSB8|U7SSB8_FUSNUSignalpeptidepeptidaseSppA,67KtypeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01676PE=3SV=1 15.248480904072842 0.3684828712757339 2 KD{I|L}{NN|[MP]|[D{I|L}]|[EV]} 5 -1 26.026 0 0 2.4174 0 0 474.2457447736344 0 474.2457447736344 0 3.3496219575940955 0 0 0 0.5 0 0 0.3807196863200844 KD{I|L}{NN|[MP]|[D{I|L}]|[EV]} 2.4174 - 52 NaN NaN 106439.6 NaN 6479 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9044 46.222 NaN 77256 35 0 11250 0.261 + -1 IMKLRMCM 8 43 529.2546654512602 1056.4947779693202 2 529.254150390625 MULTI HCD FTMS 0 0 0 9038 23864.296875 0.2661725742641724 29 -0.4489097595214844 6 2 Oxidation (M) _IMKLRM(Oxidation (M))CM(Oxidation (M))_ REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF 14.581692164780916 0.48650662947107914 2 PE 2 -1 25.969 0 0 2.458 0 0 812.3747443955223 0 812.3747443955223 0 5.484550065040281 0 0 0 0.5 0 0 0 PE 2.458 - 12 NaN NaN 118405.8 NaN 6480 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9045 46.225 NaN 70838 35 0 9980.2 0.261 -1 VMSATFAKF 9 40 509.2569630423741 1016.4993731515482 2 509.2560119628906 MULTI HCD FTMS 0 0 0 9038 13188.0380859375 0.1857360812276126 -5 0.13858413696289062 7 Oxidation (M) _VM(Oxidation (M))SATFAKF_ ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6714 0 0 851.4202543544764 0 851.4202543544764 0 1.5321251377534377 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6714 + + 10 + NaN NaN 100422 NaN 6481 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9046 46.229 NaN 32386 35 0 4840.7 0.261 -1 VHANCHLI 8 23 482.24497676229953 962.4754005913991 2 482.2438049316406 MULTI HCD FTMS 0 0 0 9038 11192.4453125 0.5611909148002272 8 -0.2250823974609375 8 Carbamidomethyl (C) _VHANC(Carbamidomethyl (C))HLI_ ENST00000392861.6_1_2:145274916-145275705:-|nuORF;ENST00000435831.5_1_2:145274916-145275300:-|nuORF 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82522.9 NaN 6482 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9047 46.232 NaN 45851 35 0 5713 0.261 -1 RYLGRGYCCR 10 36 454.2155577009208 1359.6248437029624 3 453.8797912597656 MULTI HCD FTMS 0 0 0 9038 9220.9970703125 0.5581080609820899 10 -0.24355697631835938 9 2 Carbamidomethyl (C) _RYLGRGYC(Carbamidomethyl (C))C(Carbamidomethyl (C))R_ ENST00000597924.5_1_19:53345283-53349845:-|nuORF 0.6976657623105312 0.47161084886498755 2 N[R{M(Oxidation (M))|F}] 3 -1 6.5668 0 0 0.48299 0 0 924.4046116246406 0 924.4046116246406 0 6.5668186536885305 0 0 0 0 0 0 0 N[R{M(Oxidation (M))|F}] 0.48299 - 5 + NaN NaN 84372.1 NaN 6483 2562 9038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9049 46.237 NaN 283220 35 0 28692 0.327 + 18202 MPDLPEKL 8 65 479.74950118057643 957.4844494279529 2 479.7492370605469 MULTI HCD FTMS 0 0 0 9048 189064.4375 0.7437767576325005 -6 0.17157363891601562 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 57.72198328787511 0.07996266466726457 2 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 45.896 0 0 4.7934 4.7934 91.057 0 0 0 22.92464714820923 9.731975075880328 9.731975075880328 45.895709633532746 0 1.7302046884880937 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 4.7934 + + 88 + NaN NaN 134076.1 NaN 6484 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9050 46.241 NaN 470000 35 0 43456 0.261 + 13120 KYLGQLHYL 9 66 567.8187277789915 1133.622902624783 2 567.8187866210938 MULTI HCD FTMS 0 0 0 9048 265448.125 1 0 0 2 Unmodified _KYLGQLHYL_ ENSG00000076201|ENST00000265562|PTPN23 120.45040980043947 0.0012363446172167195 2 KY{I|L}GQ{I|L}HY{I|L} 9 0 + 73.955 0 0 6.5238 6.5238 86.037 0 0 0 2.8306706706805187 2.8306706706805187 2.8306706706805187 2.8306706706805187 0 2.548455006504028 0 0 0.28872548999643577 + + KY{I|L}GQ{I|L}HY{I|L};[YK]{I|L}GQ{I|L}HY{I|L};[Y{I|L}]KGQ{I|L}HY{I|L};{I|L}YKGQ{I|L}HY{I|L};KY{I|L}G[AG]{I|L}HY{I|L};{I|L}YKG[AG]{I|L}HY{I|L};{I|L}YN[KA]{I|L}HY{I|L};KY{I|L}GH[Q{I|L}]Y{I|L};K{[{M(Oxidation (M))|F}D]|MM}[KA]{I|L}HY{I|L};{I|L}YKGH[Q{I|L}]Y{I|L} 6.5238;6.2741;5.8448;5.5827;5.4568;4.7704;3.8195;3.5702;3.5049;2.6291 +;+;-;-;-;-;-;-;-;- + 344 + NaN NaN 157307.3 NaN 6485 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9051 46.245 NaN 105460 35 0 27495 0.263 + 26338 SSDPGQPVL 9 26 450.2268445248975 898.439136116595 2 450.22662353515625 MULTI HCD FTMS 0 0 0 9048 33378.28515625 0.3531792051819649 5 -0.15111541748046875 3 Unmodified _SSDPGQPVL_ ENSG00000137393|ENST00000259939|RNF144B;nc|ENSG00000137393|Q7Z419-2|RNF144B 9.38312468134398 0.279288223203164 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103116.2 NaN 6486 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9052 46.248 NaN 103060 35 0 12343 0.261 -1 YPESESIMM 9 43 559.7229369180874 NaN 0 559.72265625 PEAK HCD FTMS 0 0 0 9048 35613.78125 0.23871359033919215 -14 0.37552642822265625 4 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 36.04419817259434 0.09096180745216527 2 T{M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F} 7 -1 35.221 0 0 3.152 0 0 63.99605241444494 162.02254663638908 226.018599050834 0 0 0 0 0 0.5 0 0.8494850021680094 0 T{M(Oxidation (M))|F}[RH]S{I|L}{M(Oxidation (M))|F} 3.152 - 40 + NaN NaN 105911.6 NaN 6487 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9053 46.252 NaN 92178 35 0 10186 0.261 + 23578 RPDTLDPAL 9 43 499.26958960916204 996.5246262851241 2 499.27020263671875 MULTI HCD FTMS 0 0 0 9048 29456.625 0.026050461971121 19 -0.3052406311035156 5 Unmodified _RPDTLDPAL_ ENSG00000100519|ENST00000445930|PSMC6;ENSG00000161057|ENST00000292644|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2 11.494710602746466 0.2610445893512368 2 DPA{I|L} 4 5 37.735 0 0 3.7867 0 0 582.3108998029312 0 582.3108998029312 0 37.735097166722156 0 0 0 0.8807196863200843 0 0 0 + DPA{I|L} 3.7867 + + 22 NaN NaN 94492.7 NaN 6488 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9054 46.255 NaN 156100 35 0 12967 0.261 -1 0 51 488.4250796527504 2924.5068191169025 6 488.7587585449219 MULTI HCD FTMS 0 0 0 9048 51036.81640625 0.7507724976471963 -5 0.15186309814453125 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.52948 0 0 2759.4281275659246 0 2759.4281275659246 0 3.718553028398688 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.52948 - 51 + NaN NaN 104332.4 NaN 6489 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9055 46.258 NaN 58612 35 0 4216.8 0.261 -1 FSEVYKATC 9 42 552.7545557199029 NaN 0 552.7688598632812 PEAK HCD FTMS 0 0 0 9048 4071.4091796875 0.39825204130388975 -1 0.032989501953125 7 Carbamidomethyl (C) _FSEVYKATC(Carbamidomethyl (C))_ ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6 6.723162845929126 0.26266733336404485 2 VH 2 -1 7.9588 0 0 0.72124 0 0 234.0733947717569 630.2710665338499 864.3444613056067 0 0 0 0 0 0 0 0 0 VH 0.72124 - 6 + NaN NaN 103253.7 NaN 6490 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9056 46.262 NaN 72146 35 0 9284.1 0.261 -1 VYGIHNPVM 9 33 523.2591466618223 NaN 0 523.2597045898438 PEAK HCD FTMS 0 0 0 9048 11046.3525390625 0.5787921093477607 1 -0.029712677001953125 8 Oxidation (M) _VYGIHNPVM(Oxidation (M))_ ENSG00000007062|ENST00000447510|PROM1;nc|ENSG00000007062|O43490-2|PROM1 4.3292370932331545 0.2742679634796037 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98197.5 NaN 6491 2563 9048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9058 46.267 NaN 3034100 35 0 374050 0.327 + 556 APEEHPVLL 9 99 502.77415335255756 1003.5337537719151 2 502.77423095703125 MULTI HCD FTMS 0 0 0 9057 1869090.125 0.020013536646926927 -10 0.2836418151855469 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 139.54400939418784 2.61670173137287E-05 2 [PA]EEHPV{I|L}{I|L} 9 0 + 79.594 0 0 7.9313 7.9313 88.52 0 0 0 2.7865969499212184 2.7865969499212184 2.7865969499212184 2.7865969499212184 0 2.1237125054200234 1.3010299956639813 1.055462187404089 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};EEPAHPV{I|L}{I|L};[VP]HDDPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[VP]DDH{I|L}VP{I|L} 7.9313;7.6537;6.3119;6.2826;5.8901;5.8418;5.4629;5.3676;5.1819;4.6631 +;+;-;-;-;-;-;-;-;- + 2330 NaN NaN 544187.6 NaN 6492 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9059 46.271 NaN 1804200 35 0 248370 0.261 + 24779 RYPDNLKHLYL 11 91 477.92975252221277 1430.7674281668383 3 477.9295349121094 MULTI HCD FTMS 0 0 0 9057 601201.5 0.20562811502559059 -5 0.14519119262695312 2 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 59.49591170135616 0.042424245816579324 2 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 84.985 0 0 5.9398 5.9398 87.428 0 0 0 5.606673061697364 55.31920795989694 5.606673061697364 8.762874945799751 0 2.353917193908117 0 0.7742275032520141 0.7742275032520141 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KHY{I|L}{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L};[YR][DP]GG{I|L}KHY{I|L}{I|L};{[TV]|[{I|L}S]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]H{I|L}Y{I|L};{[TV]|[{I|L}S]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]HY{I|L}{I|L} 5.9398;5.3274;5.3018;4.6893;3.8833;3.2709 +;-;-;-;-;- + 1054 NaN NaN 369710.5 NaN 6493 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9060 46.275 NaN 147450 35 0 9720.9 0.261 + 33399 YGNTLVEFR 9 52 549.7820486515097 1097.5495443698194 2 550.2824096679688 MULTI HCD FTMS 0 0 0 9057 59404.1484375 0.8948435698319249 1 -0.029674530029296875 3 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 27.628801355627647 0.12213550946336599 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 43.812 0 0 3.9918 0 0 563.3072480825132 0 563.3072480825132 0 16.365006360318688 0 0 0 1.9247425010840047 0 0 0.6861818737241735 VTN{[DS]|[MA]|[CV]|TT} 3.9918 - 92 + NaN NaN 116868 NaN 6494 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9061 46.278 NaN 129040 35 0 13829 0.261 + 21187 PPYPSYPHPI 10 58 584.2949896319406 1166.575426330681 2 585.3125 MULTI HCD FTMS 0 0 0 9057 15836.6748046875 0.2660413356753155 21 -0.30530548095703125 4 Unmodified _PPYPSYPHPI_ REV__ENST00000339464.8_1_22:46316419-46316704:-|nuORF 6.2057823575117 0.44245551207394906 2 PPDSSG 6 -1 36.375 0 0 3.1181 0 0 0 623.3521212213499 623.3521212213499 17.65153777800478 0 0 0 0 0 0 0 0 PPDSSG 3.1181 - 45 + NaN NaN 106914.3 NaN 6495 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9062 46.281 NaN 82864 35 0 10164 0.261 + 9064 HPEWGDEQL 9 38 555.7462090864261 1109.4778652396521 2 555.7465209960938 MULTI HCD FTMS 0 0 0 9057 30701.015625 0.3907028601016653 -2 0.06270217895507812 5 Unmodified _HPEWGDEQL_ ENSG00000073756|ENST00000367468|PTGS2;ENST00000490885.6_1_1:186645551-186649536:-|nuORF 17.11289562659939 0.2125047172822487 2 EQ{I|L} 3 6 30.005 0 0 2.7044 0 0 721.2849513888042 0 721.2849513888042 0 14.54750954047803 0 0 0 0.3807196863200844 0 0 0 + EQ{I|L} 2.7044 + + 17 NaN NaN 97941.9 NaN 6496 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9063 46.285 NaN 57927 35 0 7844.7 0.261 + 24579 RYLNKSFVL 9 42 570.3318557746591 1138.649158616118 2 570.3320922851562 MULTI HCD FTMS 0 0 0 9057 22357.333984375 0.28627905392441183 -3 0.08909988403320312 6 Unmodified _RYLNKSFVL_ ENSG00000132623|ENST00000378392|ANKEF1 1.844237919475145 0.33703635659052655 2 K 1 8 5.4846 0 0 0.48167 0 0 464.26184279756177 543.2660616510374 1007.5279044485992 0 0 0 0 0 0 0 0 0 + K 0.48167 + + 5 + NaN NaN 110127.8 NaN 6497 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9064 46.288 NaN 78542 35 0 8185.8 0.261 + 8600 HAYDGKDYISL 11 50 641.3090833675026 1280.603613801805 2 641.3087158203125 MULTI HCD FTMS 0 0 0 9057 53404.23046875 0.90950810528633 -3 0.08909988403320312 7 Unmodified _HAYDGKDYISL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 20.871137199558856 0.2752315090543355 2 HAYD 4 7 35.165 0 0 2.746 0 0 0 791.3979586236936 791.3979586236936 5.91251590079672 0 0 0 0 0.9247425010840047 0 0 0 + HAYD 2.746 + + 16 + NaN NaN 99199.1 NaN 6498 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9065 46.291 NaN 124350 35 0 24307 0.264 + 15667 LPEKIESSL 9 45 508.286763405347 1014.558973877494 2 508.28594970703125 MULTI HCD FTMS 0 0 0 9057 37875.765625 1 0 0 8 Unmodified _LPEKIESSL_ ENSG00000113845|ENST00000494664|TIMMDC1 15.248480904072842 0.22861284681709862 2 {I|L}P 2 7 32.474 0 0 3.2008 0 0 0 801.3954082835453 801.3954082835453 24.402281476392034 0 0 0 0 0 1.3010299956639813 0 0 + {I|L}P 3.2008 + + 11 + NaN NaN 96754 NaN 6499 2564 9057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9067 46.296 NaN 248690 35 0 21865 0.327 + 11125 IYIKQIKTF 9 69 577.3526782878151 1152.6908036424302 2 577.3526611328125 MULTI HCD FTMS 0 0 0 9066 106167.9453125 0.5849646300678473 4 -0.11004638671875 1 Unmodified _IYIKQIKTF_ ENSG00000103479|ENST00000262133|RBL2 96.93554129104106 0.004344229100022454 2 {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F} 9 0 + 94.483 0 0 8.1967 8.1967 92.331 0 0 0 13.51342204748164 13.51342204748164 13.51342204748164 9.208187539523749 0 2.892159058960253 1.6989700043360187 1.079689690656103 0.3494850021680094 + + {I|L}Y{I|L}KQ{I|L}KT{M(Oxidation (M))|F};{I|L}Y{I|L}K[AG]{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}KQ{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}K[AG]{I|L}KT{M(Oxidation (M))|F};[Y{I|L}]{I|L}KQ{I|L}TK{M(Oxidation (M))|F};[Y{I|L}]{I|L}K[AG]{I|L}TK{M(Oxidation (M))|F};[K{I|L}][Y{I|L}]Q{I|L}KT{M(Oxidation (M))|F};[K{I|L}]Q[Y{I|L}]{I|L}KT{M(Oxidation (M))|F};[K{I|L}][Y{I|L}][AG]{I|L}KT{M(Oxidation (M))|F};[K{I|L}][Y{I|L}]Q{I|L}TK{M(Oxidation (M))|F} 8.1967;7.3979;7.0244;6.2256;6.1718;5.373;3.1288;3.0199;2.3299;2.2762 +;-;+;-;-;-;-;-;-;- + 247 + NaN NaN 120488.2 NaN 6500 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9068 46.301 NaN 89624 35 0 12274 0.261 -1 MPLLRQEEL 9 51 572.8051026931881 1143.5956524531762 2 572.8049926757812 MULTI HCD FTMS 0 0 0 9066 43252.3671875 0.5332306034499364 2 -0.06568145751953125 2 Oxidation (M) _M(Oxidation (M))PLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 16.149105407346934 0.22083165093524068 2 PE{I|L} 3 -1 25.674 0 0 2.245 0 0 786.4243870652638 0 786.4243870652638 0 13.711375162600701 0 0 0 0 0 0.4247425010840047 0 PE{I|L} 2.245 - 17 NaN NaN 102097.3 NaN 6501 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9069 46.304 NaN 41372 35 0 4087.4 0.261 + 64 ACNVPEPEEKF 11 30 631.7898872655072 1261.5652215978143 2 631.7905883789062 MULTI HCD FTMS 0 0 0 9066 26986.2421875 0.396327307448625 -2 0.05938720703125 3 Unmodified _ACNVPEPEEKF_ ENSG00000145703|ENST00000274364|IQGAP2;ENST00000509741.1_1_5:75970496-75973199:+|nuORF;nc|ENSG00000145703|Q13576-2|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2 4.189502756095605 0.4005469306127019 2 K{M(Oxidation (M))|F} 2 9 17.959 0 0 1.4235 0 0 968.3892079084 0 968.3892079084 0 16.699740308471753 0 0 0 0 0 0 0 + K{M(Oxidation (M))|F} 1.4235 + + 3 NaN NaN 86793.3 NaN 6502 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9070 46.308 NaN 236780 35 0 32359 0.262 + -1 MPQAMSFVM 9 52 529.2297169047124 1056.4448808762247 2 529.7313842773438 MULTI HCD FTMS 0 0 0 9066 23347.185546875 0.05419656832416298 -14 0.38234710693359375 4 Oxidation (M) _MPQAMSFVM(Oxidation (M))_ REV__ENSG00000135912|ENST00000392102|TTLL4;REV__TTLL4|p.E531Vfs*13|1|0.09|ENSG00000135912|chr2:218740161-218740162|-/TCACAGTT|frameshift_variant 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}P[{I|L}A]{[C(Carbamidomethyl (C))G]|[NC]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 -1 + 44.186 0 0 4.1825 4.1825 88.017 0 0 0 37.19659678281481 16.478174818886373 16.478174818886373 15.28028723600243 0 0.8807196863200843 0 0 0.3494850021680094 {M(Oxidation (M))|F}P[{I|L}A]{[C(Carbamidomethyl (C))G]|[NC]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[KQ]{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F} 4.1825;2.7362;1.699 -;-;- 83 + NaN NaN 126285.7 NaN 6503 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9071 46.311 NaN 73180 35 0 8429.7 0.261 + 9565 HRQKRVSS 8 25 499.2842263352994 NaN 0 499.2684631347656 PEAK HCD FTMS 0 0 0 9066 4192.6767578125 0.4608083813375493 1 -0.026279449462890625 5 Unmodified _HRQKRVSS_ REV__ENST00000508319.1_1_5:43294796-43294898:-|nuORF 2.0597508629832335 0.38822285293237185 2 AP 2 -1 10.969 0 0 1.1007 0 0 131.12625919948522 694.3171980579395 825.4434572574248 0 0 0 0 0 0 0 0 0 AP 1.1007 - 3 + NaN NaN 95767.8 NaN 6504 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9072 46.314 NaN 33603 35 0 5678.7 0.261 + -1 PMCWAMKMW 9 30 621.2520227218528 1240.4894925105054 2 621.251953125 MULTI HCD FTMS 0 0 0 9066 12627.5966796875 0.4215576324678161 5 -0.1327056884765625 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))PM(Oxidation (M))CWAMKMW_ REV__ENST00000413878.1_2_18:25593774-25593855:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86827.5 NaN 6505 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9073 46.318 NaN 189240 35 0 15438 0.262 -1 SANLEEVTM 9 61 505.2289868809931 1008.4434208287862 2 505.22833251953125 MULTI HCD FTMS 0 0 0 9066 17078.09765625 0.0468957676609186 43 -0.7882843017578125 7 Oxidation (M) _SANLEEVTM(Oxidation (M))_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 11.494710602746466 0.2610445893512368 2 EV[{M(Oxidation (M))|F}T] 4 -1 15.164 0 0 1.5037 0 0 514.2388783185562 0 514.2388783185562 0 0.5597063201256702 0 0 0 0.8252574989159953 0 0 0 EV[{M(Oxidation (M))|F}T] 1.5037 + + 10 NaN NaN 121152.4 NaN 6506 2565 9066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9075 46.323 NaN 688610 35 0 90968 0.327 + 1135 AYLEAHETF 9 68 540.7535201907347 1079.4924874482692 2 540.753662109375 MULTI HCD FTMS 0 0 0 9074 349312.0625 0.17879463537365278 -3 0.08566665649414062 1 Unmodified _AYLEAHETF_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 92.8221339359638 0.0044520161739443126 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[HA]ET{M(Oxidation (M))|F} 9 0 + 74.944 0 0 6.9425 6.9425 94.322 0 0 0 24.678477052876815 56.00379364601565 24.678477052876815 38.58349385648224 0 2.305462187404089 2 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[HA]ET{M(Oxidation (M))|F};N{[RE]|[WV]}{[CT]|[{M(Oxidation (M))|F}G]}E{I|L}{[ES]|[DT]|[{I|L}C]} 6.9425;3.3683 +;- + 422 NaN NaN 186702.5 NaN 6507 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9076 46.327 NaN 263200 35 0 36622 0.261 + -1 QVAECVFLR 9 73 561.2937207613024 NaN 0 561.282958984375 PEAK HCD FTMS 0 0 0 9074 8999.02734375 1 0 0 2 Carbamidomethyl (C) _QVAEC(Carbamidomethyl (C))VFLR_ REV__ENSG00000187535|ENST00000426508|IFT140;REV__ENST00000439987.6_1_16:1604037-1657279:-|nuORF;REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF 13.90604991867851 0.22786006501039813 2 {I|L}EQDY 5 -1 25.929 0 0 2.3139 0 0 185.10165526546842 284.1727388971313 469.2743941625997 0 0 0 0 0 0.23965182871044374 0 0.3494850021680094 0.2614393726401688 {I|L}EQDY 2.3139 - 82 + NaN NaN 130871.9 NaN 6508 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9077 46.33 NaN 68206 35 0 5634 0.261 + 8601 HAYDGKDYISL 11 47 641.3090833675026 1280.603613801805 2 641.3106079101562 MULTI HCD FTMS 0 0 0 9074 48886.625 0.832570402893665 -1 0.026279449462890625 3 Unmodified _HAYDGKDYISL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 21.799462835604743 0.267142977351036 2 HAYDH 5 7 39.993 0 0 3.123 0 0 0 654.3223971002561 654.3223971002561 19.023722004121453 0 0 0 0 0.805462187404089 0 0 0 HAYDH 3.123 - 23 + NaN NaN 91101.5 NaN 6509 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9078 46.334 NaN 135500 35 0 8020.4 0.262 + 33400 YGNTLVEFR 9 52 549.7820486515097 1097.5495443698194 2 550.282958984375 MULTI HCD FTMS 0 0 0 9074 50337.71484375 0.7582699463380844 3 -0.08376693725585938 4 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 34.40172386719151 0.0910440009062557 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 44.208 0 0 4.0279 0 0 563.3051624982437 0 563.3051624982437 0 20.026975159433533 0 0 0 1.5 0 0.6989700043360187 0 VTN{[DS]|[MA]|[CV]|TT} 4.0279 - 46 NaN NaN 100370.5 NaN 6510 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9079 46.337 NaN 87003 35 0 17910 0.261 -1 YTVSEEIVCV 10 42 599.7851443374108 1197.5557357416214 2 599.7843017578125 MULTI HCD FTMS 0 0 0 9074 23558.3515625 0.5030676934547059 -1 0.026279449462890625 5 Carbamidomethyl (C) _YTVSEEIVC(Carbamidomethyl (C))V_ ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1 9.38312468134398 0.42334543440173333 2 [YT]V 3 -1 37.447 0 0 3.127 0 0 0 831.3541115563277 831.3541115563277 32.67097795568553 0 0 0 0 1 1.6989700043360187 0 0 [YT]V 3.127 + + 17 NaN NaN 97187.3 NaN 6511 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9080 46.34 NaN 44861 35 0 4281.5 0.261 + -1 KKMKMKKL 8 38 525.8314550950372 NaN 0 525.8313598632812 PEAK HCD FTMS 0 0 0 9074 12966.8271484375 0.4433059785003446 1 -0.039402008056640625 6 Oxidation (M) _KKMKM(Oxidation (M))KKL_ REV__ENST00000553612.5_1_14:81651936-81658969:-|nuORF 4.75600775471527 0.38822285293237185 2 Y 1 -1 4.6041 0 0 0.43863 0 0 128.09221819613055 755.4673555963499 883.5595737924805 0 0 0 0 0 0 0 0 0 Y 0.43863 - 1 + NaN NaN 90532.7 NaN 6512 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9081 46.344 NaN 134510 35 0 27687 0.261 + 11119 IYIHSKVLI 9 41 543.33972362063 NaN 0 543.2781372070312 PEAK HCD FTMS 0 0 0 9074 22628.826171875 1 0 0 7 Unmodified _IYIHSKVLI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 9.38312468134398 0.24977752951804 2 {I|L}A 2 8 9.464 0 0 0.87252 0 0 131.21940403065338 766.2982882135374 897.5176922441908 0 0 0 0 0 0 0 0 0 {I|L}A 0.87252 - 5 + NaN NaN 97355.2 NaN 6513 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9082 46.347 NaN 135210 35 0 28796 0.263 + 21265 PRLTKEKLDF 10 33 416.24347959564676 NaN 0 416.24371337890625 PEAK HCD FTMS 0 0 0 9074 49221.765625 0.9156412536802345 -1 0.026279449462890625 8 Unmodified _PRLTKEKLDF_ ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104788.7 NaN 6514 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9083 46.35 NaN 643150 35 0 64097 0.261 + 428 ALCCTLHL 8 74 437.2191425919524 NaN 0 437.2191162109375 PEAK HCD FTMS 0 0 0 9074 41912.19921875 0.16502959159804842 -3 0.08566665649414062 9 Unmodified _ALCCTLHL_ ENSG00000184933|ENST00000641196|OR6A2 34.18733598223924 0.36535021990301164 2 V{I|L}AHE 5 6 26.991 0 0 3.0938 0 0 97.03323684001334 223.0721834772094 320.10542031722275 0 0 0 0 0 0.3252574989159953 0 0.9291746928241127 0 V{I|L}AHE 3.0938 - 132 + NaN NaN 182567 NaN 6515 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9084 46.354 NaN 97918 35 0 15970 0.261 + 21403 PVNDEPIV 8 44 441.7321472167969 NaN 0 441.7321472167969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _PVNDEPIV_ ENSG00000182979|ENST00000331320|MTA1;ENST00000481206.1_1_14:105935538-105936549:+|nuORF;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000494981.1_1_14:105935406-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1 9.347437153973935 0.38822285293237185 2 {I|L}{I|L} 2 7 7.4743 0 0 0.84795 0 0 459.15962128730627 193.09816919498283 652.2577904822891 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.84795 - 3 + NaN NaN 100537.1 NaN 6516 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9085 46.357 NaN 35112 35 0 5117.4 0.261 + 1898 CYVLPNEA 8 26 454.7117919921875 NaN 0 454.7117919921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _CYVLPNEA_ REV__ENSG00000078403|ENST00000307729|MLLT10;REV__ENSG00000275023|ENST00000621332|MLLT6;REV__ENST00000471315.5_1_10:21823405-21827865:+|nuORF;REV__ENST00000476557.5_1_10:21823633-21884417:+|nuORF;REV__ENST00000495130.5_1_10:21823431-21846627:+|nuORF;REV__MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant;REV__nc|ENSG00000078403|P55197-1|MLLT10;REV__nc|ENSG00000078403|P55197-2|MLLT10;REV__nc|ENSG00000078403|P55197-3|MLLT10 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92747.4 NaN 6517 2566 9074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9087 46.362 NaN 438740 35 0 85055 0.327 + 23701 RQNLRKYFF 9 65 424.57186453097495 1270.693764193125 3 424.57177734375 MULTI HCD FTMS 0 0 0 9086 120427.3046875 0.0710236100328476 28 -0.38332366943359375 1 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 23.443 0 0 1.8449 0 0 958.5467132671469 0 958.5467132671469 0 4.859856381998782 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8449 + + 18 + NaN NaN 156723.5 NaN 6518 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9088 46.366 NaN 427980 35 0 40142 0.261 + 10819 ITCEPTQEL 9 64 545.7579782170242 1089.5014035008483 2 545.7579345703125 MULTI HCD FTMS 0 0 0 9086 153188.53125 0.5420643289571867 -2 0.06568145751953125 2 Carbamidomethyl (C) _ITC(Carbamidomethyl (C))EPTQEL_ tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1 41.8396318013385 0.056899836730939755 2 {[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L} 9 5 + 57.374 0 0 5.2661 5.2661 83.728 0 0 0 13.133637307377057 29.12553274253348 13.133637307377057 2.2184874961635614 0 0.8807196863200843 1.0969100130080565 0 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}EV{[QC]|[C(Carbamidomethyl (C))A]}QE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}GG[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]V[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L} 5.2661;5.0624;4.9283;4.4372;4.4209;4.2173;4.2173;4.0831;4.0831;3.6904 -;-;-;-;-;-;-;-;-;- 256 NaN NaN 153519.7 NaN 6519 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9089 46.37 NaN 393770 35 0 40923 0.261 + 571 APEELRAPGS 10 70 513.7652466914549 1025.5159404497097 2 513.7651977539062 MULTI HCD FTMS 0 0 0 9086 237057.171875 0.4270062653010265 -7 0.22074508666992188 3 Unmodified _APEELRAPGS_ ENSG00000142632|ENST00000270747|ARHGEF19;nc|ENSG00000142632|Q8IW93-2|ARHGEF19 18.373094154950223 0.33925629317698053 2 APEEH 5 6 38.377 0 0 3.7422 0 0 0 459.25832572422377 459.25832572422377 13.600840614449794 0 0 0 0 1.1237125054200234 0 0.3494850021680094 0 APEEH 3.7422 - 74 + NaN NaN 146613.1 NaN 6520 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9090 46.373 NaN 142810 35 0 12782 0.262 + 26412 STDHIPILYR 10 53 405.5556662774707 1213.6451694326122 3 405.89019775390625 MULTI HCD FTMS 0 0 0 9086 22307.490234375 0.47933257589835865 1 -0.0260467529296875 4 Unmodified _STDHIPILYR_ ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1 25.997395711884035 0.2679411488660478 2 {I|L}CP{I|L}[{I|L}T]A{M(Oxidation (M))|F} 8 8 37.344 0 0 3.077 0 0 337.17363451672355 0 337.17363451672355 0 37.34427538256881 0 0 0 1 0 0 0 {I|L}CP{I|L}[{I|L}T]A{M(Oxidation (M))|F} 3.077 - 83 + NaN NaN 113914 NaN 6521 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9091 46.376 NaN 142680 35 0 14471 0.261 + 24191 RYFIHFRMYL 10 38 482.58946873549945 NaN 0 482.5894775390625 PEAK HCD FTMS 0 0 0 9086 21708.185546875 0.17063536292951798 -2 0.06568145751953125 5 Unmodified _RYFIHFRMYL_ nc|ENSG00000143889|Q8WVV9-3|HNRNPLL 1.7422754331352037 0.33869314273211465 2 C(Carbamidomethyl (C)) 1 10 0.71334 0 0 0.074062 0 0 669.006866082524 131.1071718805297 800.1140379630536 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.074062 - 1 + NaN NaN 107063.1 NaN 6522 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9092 46.38 NaN 139860 35 0 16231 0.261 + 29438 TYTDVTPRQF 10 43 614.3036771893661 1226.5928014455321 2 614.80517578125 MULTI HCD FTMS 0 0 0 9086 84687.875 1 0 0 6 Unmodified _TYTDVTPRQF_ ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF 53.40400417844725 0.06540992187319636 2 [YT]TDVT 6 4 70.406 0 0 5.74 0 0 0 543.2686520450268 543.2686520450268 57.447274948966935 0 0 0 0 1.774227503252014 2 0.4247425010840047 0 + [YT]TDVT 5.74 + + 35 + NaN NaN 109937.6 NaN 6523 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9093 46.383 NaN 34082 35 0 4270.7 0.261 -1 CITQMCFFL 9 27 618.2677612304688 NaN 0 618.2677612304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))ITQM(Oxidation (M))C(Carbamidomethyl (C))FFL_ ENSG00000127515|ENST00000641129|OR7A10 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93936 NaN 6524 2567 9086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9095 46.388 NaN 851640 35 0 135980 0.326 + 32238 VYTSGVYHI 9 76 519.7662859871925 1037.518019041185 2 519.7662963867188 MULTI HCD FTMS 0 0 0 9094 305435.78125 0.9813367258952664 1 -0.01831817626953125 1 Unmodified _VYTSGVYHI_ ENSG00000111077|ENST00000314250|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant 89.42679046578446 0.004540987215715461 2 VYTSGVYH{I|L} 9 0 + 79.307 0 0 7.6439 7.6439 96.659 0 0 0 72.31730022313528 4.704999916446795 4.704999916446795 79.30700026649546 0 1.6237125054200234 1.6989700043360187 0.9247425010840047 0 + + VYTSGVYH{I|L} 7.6439 + + 124 + NaN NaN 233866.9 NaN 6525 2568 9094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9096 46.392 NaN 420940 35 0 29038 0.399 + 34256 YPDRIMNTF 9 80 586.7737544853795 1171.532956037559 2 586.7742309570312 MULTI HCD FTMS 0 0 0 9094 264234.125 0.05882533824653672 -16 0.45107269287109375 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 88.36371040165146 0.004568843997105255 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 79.834 0 0 6.8145 6.8145 88.097 0 0 0 6.747220911618271 6.747220911618271 6.747220911618271 6.747220911618271 0 2.6989700043360187 1.6989700043360187 1.0994850021680094 0.6989700043360187 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 6.8145;6.2386;5.7352;5.7302;5.4526;5.2175;5.1625;4.9492;4.4315;4.3765 +;+;-;-;-;-;-;-;-;- + 1107 + NaN NaN 155351.5 NaN 6526 2568 9094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9097 46.398 NaN 248440 35 0 17111 0.262 + 5803 FPAVGMHSL 9 71 487.7419347650263 NaN 0 487.74176025390625 PEAK HCD FTMS 0 0 0 9094 115456.984375 0.7494801536398171 -2 0.06544876098632812 3 Oxidation (M) _FPAVGM(Oxidation (M))HSL_ ENSG00000167778|ENST00000301463|SPRYD3 85.35673624503755 0.0012370366288973111 2 PAV{[CT]|[{M(Oxidation (M))|F}G]}H 6 3 37.101 0 0 3.8112 0 0 147.0694374148665 215.10335718326408 362.1727945981306 0 0 0 0 0 1.610924374808178 0 1.274227503252014 0 + PAV{[CT]|[{M(Oxidation (M))|F}G]}H 3.8112 + + 91 + NaN NaN 122256.6 NaN 6527 2568 9094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9098 46.401 NaN 356360 35 0 27758 0.261 + 26432 STIEYVIQR 9 77 554.8036914788223 1107.5928300244445 2 554.8037109375 MULTI HCD FTMS 0 0 0 9094 161482.484375 0.4452192925621703 -6 0.18410491943359375 4 Unmodified _STIEYVIQR_ ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion 114.20165948288297 0.0022564706844261533 2 {[MG]|[TS]}{I|L}EYV{I|L}QR 9 0 + 90.671 0 0 8.1863 8.1863 92.316 0 0 0 7.147642715192504 8.26458910440094 7.147642715192504 9.208187539523749 0 2.754432191740108 0 0 0.5501648626366046 + + {[MG]|[TS]}{I|L}EYV{I|L}QR;{[MG]|[TS]}{I|L}EYV{I|L}[AG]R;[{I|L}T]SEYV{I|L}QR;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}QR;[{I|L}T]SEYV{I|L}[AG]R;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}[AG]R;{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R{I|L}QR;KYR[TA]WQR;{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R{I|L}[AG]R;KYR[TA]W[AG]R 8.1863;7.3549;6.7169;6.6258;5.8855;5.7945;3.8673;3.6598;3.0311;2.8235 +;-;-;-;-;-;-;-;-;- + 457 + NaN NaN 140603.6 NaN 6528 2568 9094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9100 46.406 NaN 48184000 35 0 5675700 0.327 + 557 APEEHPVLL 9 107 502.77415335255756 1003.5337537719151 2 502.77459716796875 MULTI HCD FTMS 0 0 0 9099 60419196 0.6469467561516653 -5 0.13972091674804688 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 139.54400939418784 2.61670173137287E-05 2 [PA]EEHPV{I|L}{I|L} 9 0 + 86.187 0 0 8.5884 8.5884 91.306 0 0 0 7.346368802282015 7.346368802282015 7.346368802282015 7.346368802282015 0 2.1237125054200234 1.3979400086720375 1.316901560044258 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[EP]EAHPV{I|L}{I|L};[VP]DDHPV{I|L}{I|L};[EP]EHAPV{I|L}{I|L};[EP]AEH{I|L}VP{I|L};{[CP]|[EA]}PEHPV{I|L}{I|L};[EP]EHVPA{I|L}{I|L} 8.5884;7.8563;7.6056;7.1785;6.9968;6.6628;6.4463;6.1956;6.1506;5.9468 +;+;-;-;-;-;-;-;-;- + 3340 NaN NaN 862032.8 NaN 6529 2569 9099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9101 46.411 NaN 3655100 35 0 522080 0.261 + 24780 RYPDNLKHLYL 11 124 477.92975252221277 1430.7674281668383 3 477.9296569824219 MULTI HCD FTMS 0 0 0 9099 2923732 1 0 0 2 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 66.61675797227278 0.01860382518341708 2 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 92.669 0 0 6.4769 6.4769 87.192 0 0 0 5.606673061697364 50.32252664744415 5.606673061697364 6.020599913279625 0 2.4489700043360187 0 0.8807196863200843 1.341129063296272 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};[DP][YR]N{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KHY{I|L}{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KH{I|L}{I|L}Y;[YR][DP]N{I|L}K{I|L}HY{I|L};[DP][YR]N{I|L}KHY{I|L}{I|L};[DP][YR]GG{I|L}KH{I|L}Y{I|L};[DP][YR]N{I|L}KH{I|L}{I|L}Y;[YR][DP]GG{I|L}KHY{I|L}{I|L} 6.4769;6.0561;5.8644;5.8389;5.6888;5.5666;5.4436;5.4181;5.268;5.2264 +;-;-;-;-;-;-;-;-;- + 7149 NaN NaN 636205.6 NaN 6530 2569 9099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9102 46.414 NaN 627230 35 0 78933 0.261 + 1087 AYIERMNYI 9 73 594.7896777494806 1187.564802565761 2 595.291015625 MULTI HCD FTMS 0 0 0 9099 94198.5 0.39036536923325665 -4 0.11004638671875 3 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 72.96794272382148 0.008127836904478181 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 78.867 0 0 6.641 6.641 89.639 0 0 0 18.4176003468815 16.478174818886373 16.478174818886373 9.208187539523749 0 2 2 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{I|L}{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{[SA]|[TG]}EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERS{[CA]|SS}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{[SA]|[TG]}E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[SA]|[TG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}{[YD]|[{M(Oxidation (M))|F}M]}C{I|L}{I|L} 6.641;5.8657;5.8657;5.4446;5.1969;5.0902;5.0294;4.6728;4.4157;4.16 +;-;-;-;-;-;-;-;-;- + 240 NaN NaN 180551.2 NaN 6531 2569 9099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9103 46.417 NaN 1443600 35 0 159100 0.264 + -1 VPLAVCGSA 9 101 437.22722024370034 NaN 0 437.2191162109375 PEAK HCD FTMS 0 0 0 9099 107433.1953125 0.6998427224687728 -4 0.11004638671875 4 Carbamidomethyl (C) _VPLAVC(Carbamidomethyl (C))GSA_ REV__ENSG00000145916|ENST00000313386|RMND5B;REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF;REV__ENST00000515360.5_1_5:177569546-177575030:+|nuORF;REV__nc|ENSG00000145916|Q96G75-2|RMND5B 44.40701690623563 0.06414185948616917 2 V{I|L}AHE 5 -1 47.401 0 0 5.4331 0 0 97.05273511318383 223.0722597711547 320.12499488433855 0 0 0 0 0 2.2059771852360797 0 1.1184151806525389 0 V{I|L}AHE 5.4331 - 499 + NaN NaN 303658.7 NaN 6532 2569 9099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9104 46.421 NaN 44156 35 0 2671.8 0.261 -1 0 32 598.9373779296875 NaN 0 598.9373779296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 Q 1 -1 3.9794 0 0 0.33276 0 0 349.43637118964995 715.3325289361936 1064.7689001258436 0 0 0 0 0 0 0 0 0 Q 0.33276 - 2 + NaN NaN 101264.9 NaN 6533 2569 9099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9105 46.424 NaN 575290 35 0 80227 0.262 -1 APEENLLPC 9 78 521.7471640025967 1041.4797750719933 2 521.7474365234375 MULTI HCD FTMS 0 0 0 9099 108281.015625 0.40226589380366384 -5 0.13972091674804688 6 Carbamidomethyl (C) _APEENLLPC(Carbamidomethyl (C))_ MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant 27.628801355627647 0.12213550946336599 2 APEE 4 -1 32.057 0 0 3.0781 0 0 0 612.2823160311027 612.2823160311027 5.987423959240331 0 0 0 0 0.6139829889124311 0 0.6989700043360187 0 APEE 3.0781 + + 77 + NaN NaN 179424.6 NaN 6534 2569 9099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9107 46.429 NaN 581050 35 0 81053 0.327 -1 APEENLLPC 9 83 521.7471640025967 1041.4797750719933 2 521.747314453125 MULTI HCD FTMS 0 0 0 9106 75238.5078125 0.27951239115143145 -4 0.10642623901367188 1 Carbamidomethyl (C) _APEENLLPC(Carbamidomethyl (C))_ MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant 34.40172386719151 0.0910440009062557 2 APEE 4 -1 36.006 0 0 3.4572 0 0 0 612.2833346002561 612.2833346002561 15.03669175573954 0 0 0 0 1.1237125054200234 0 0.7302046884880937 0 APEE 3.4572 + + 115 + NaN NaN 175925.7 NaN 6535 2570 9106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9108 46.433 NaN 48621 35 0 6644.5 0.261 -1 0 29 634.5470581054688 NaN 0 634.5470581054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89315 NaN 6536 2570 9106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9110 46.438 NaN 1149300 35 0 228030 0.327 + -1 MPQAMSFVM 9 86 529.2297169047124 1056.4448808762247 2 529.2298583984375 MULTI HCD FTMS 0 0 0 9109 518399.40625 0.5879536631531461 -4 0.076324462890625 1 Oxidation (M) _MPQAMSFVM(Oxidation (M))_ REV__ENSG00000135912|ENST00000392102|TTLL4;REV__TTLL4|p.E531Vfs*13|1|0.09|ENSG00000135912|chr2:218740161-218740162|-/TCACAGTT|frameshift_variant 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 -1 29.737 0 0 2.8148 0 0 645.2928250674341 0 645.2928250674341 0 15.819035816551565 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.8148 + + 210 + NaN NaN 249773.2 NaN 6537 2571 9109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9111 46.442 NaN 419160 35 0 49757 0.261 + 1992 DASGPDPQL 9 76 450.20885001211633 898.4031470910327 2 450.208740234375 MULTI HCD FTMS 0 0 0 9109 423361 0.41272650822132206 -14 0.3729667663574219 2 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 96.36657018975838 0.004359138328518304 2 {[DA]|[EG]}SGPD[QP]{I|L} 9 0 + 84.772 0 0 9.4358 9.4358 96.822 0 0 0 2.0990093236770946 2.0990093236770946 2.0990093236770946 21.94537812595911 0 2.610924374808178 1.6989700043360187 1.1549471895720984 0 + + {[DA]|[EG]}SGPD[QP]{I|L};{[SA]|[TG]}DGPD[QP]{I|L};[DP]{[QS]|[NT]}D[QP]{I|L};[DP][SG]AD[QP]{I|L};[DP]{[ES]|[DT]|[{I|L}C]}N[QP]{I|L} 9.4358;6.9931;2.8044;2.7474;2.218 +;-;-;-;- + 239 NaN NaN 152718.3 NaN 6538 2571 9109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9113 46.447 NaN 2390900 35 0 256620 0.327 + 1136 AYLEAHETF 9 110 540.7535201907347 1079.4924874482692 2 540.753662109375 MULTI HCD FTMS 0 0 0 9112 1801715.125 0.9222040502010155 3 -0.0308990478515625 1 Unmodified _AYLEAHETF_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 156.15588289589118 2.3186882095317417E-06 2 AY{I|L}EAHET{M(Oxidation (M))|F} 9 0 + 98.203 0 0 9.0971 9.0971 94.684 0 0 0 44.11172127622589 14.973024840566467 14.973024840566467 11.17234179050618 0 2.757490805844361 2 1.805462187404089 0 + + AY{I|L}EAHET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAHET{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}EAHET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}AHET{M(Oxidation (M))|F};AY{I|L}{M(Oxidation (M))|F}AHETE;[Y{I|L}]AEAHET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAH[{M(Oxidation (M))|F}T]E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EWDVAN;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA[{M(Oxidation (M))|F}T]HE;[{M(Oxidation (M))|F}T]VEAHET{M(Oxidation (M))|F} 9.0971;8.0621;7.4287;6.7624;6.3388;5.8514;5.6239;5.4821;4.9704;4.9356 +;+;-;-;-;-;-;-;-;- + 5723 + NaN NaN 464965.4 NaN 6539 2572 9112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9114 46.452 NaN 489500 35 0 128850 0.261 + 9171 HPISSEELL 9 56 512.7688131755589 1023.5230734179178 2 512.7689208984375 MULTI HCD FTMS 0 0 0 9112 379548.625 0.5612588925078302 -6 0.12490081787109375 2 Unmodified _HPISSEELL_ ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921|ETS1 34.10243960390752 0.09241788333544565 2 E{I|L}{I|L} 3 6 40.445 0 0 3.9516 0 0 650.3020335120395 0 650.3020335120395 0 28.1259189508755 0 0 0 1 0 0.4247425010840047 0 + E{I|L}{I|L} 3.9516 + + 31 NaN NaN 157986.9 NaN 6540 2572 9112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9115 46.455 NaN 1832300 35 0 209760 0.262 + 9863 IAAVYEHA 8 110 437.22722024370034 NaN 0 437.2274475097656 PEAK HCD FTMS 0 0 0 9112 68375.5 0.4454125741208026 -1 0.009174346923828125 3 Unmodified _IAAVYEHA_ ENSG00000112303|ENST00000326499|VNN2;ENST00000448644.2_1_6:133055390-133055831:-|nuORF;ENST00000526192.1_1_6:133074642-133078971:-|nuORF;nc|ENSG00000112303|O95498-2|VNN2;nc|ENSG00000112303|O95498-3|VNN2;nc|ENSG00000112303|O95498-4|VNN2;nc|ENSG00000112303|O95498-5|VNN2 46.92087301778293 0.25711335765761706 2 V{I|L}AHE 5 6 48.446 0 0 5.5529 0 0 97.05380454380607 223.0722597711547 320.1260643149608 0 0 0 0 0 2.2302046884880937 0 1.374803706770636 0 V{I|L}AHE 5.5529 - 497 + NaN NaN 358647.7 NaN 6541 2572 9112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9117 46.46 NaN 1459100 35 0 295550 0.327 + 20560 PEEHPVLL 8 69 467.25572256868077 NaN 0 467.2557373046875 PEAK HCD FTMS 0 0 0 9116 169782.53125 0.6791448115065488 -1 0.01245880126953125 1 Unmodified _PEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 101.72198241140316 0.032902293110466656 2 {I|L}VPHE 5 7 52.211 0 0 5.5991 0 0 131.0954053200416 223.07190881900627 354.1673141390479 0 0 0 0 0 2.0669015600442577 0 1.110924374808178 0 {I|L}VPHE 5.5991 - 169 + NaN NaN 303221.4 NaN 6542 2573 9116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9118 46.464 NaN 158130 35 0 25643 0.261 -1 AYMYYLKHF 9 52 417.8667907714844 NaN 0 417.8667907714844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _AYM(Oxidation (M))YYLKHF_ ENSG00000120800|ENST00000261637|UTP20 12.240655878213236 0.2359303321180293 2 A 1 -1 6.9897 0 0 0.83838 0 0 627.6136068585954 132.04548059635002 759.6590874549454 0 0 0 0 0 0 0 0 0 A 0.83838 + + 3 + NaN NaN 110293.7 NaN 6543 2573 9116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9120 46.469 NaN 231400 35 0 18210 0.327 + 18203 MPDLPEKL 8 66 479.74950118057643 957.4844494279529 2 480.25152587890625 MULTI HCD FTMS 0 0 0 9119 135471.578125 0.7919744066984108 1 -0.009136199951171875 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 45.69961567697781 0.1577113171574352 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 0 + 38.963 0 0 4.0693 4.0693 89.671 0 0 0 14.442059438411903 4.392653074926045 4.392653074926045 34.83288122256525 0 1.610924374808178 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L};[EP]K[VP][{M(Oxidation (M))|F}E]{I|L} 4.0693;0.43131 +;- + 125 + NaN NaN 115182.8 NaN 6544 2574 9119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9121 46.473 NaN 652690 35 0 97875 0.261 -1 APEENLLPC 9 96 521.7471640025967 1041.4797750719933 2 521.7470703125 MULTI HCD FTMS 0 0 0 9119 250336.34375 0.9300039576548347 -1 0.009304046630859375 2 Carbamidomethyl (C) _APEENLLPC(Carbamidomethyl (C))_ MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant 22.736283301280096 0.1639198954644489 2 APEE 4 -1 29.914 0 0 2.8723 0 0 0 612.2827891290632 612.2827891290632 0.661837734644596 0 0 0 0 0.6549471895720985 0 0.6989700043360187 0 APEE 2.8723 + + 177 + NaN NaN 182571.7 NaN 6545 2574 9119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9123 46.478 NaN 427720 35 0 41226 0.411 + 9140 HPHDLVILM 9 69 545.7899634377012 NaN 0 545.7898559570312 PEAK HCD FTMS 0 0 0 9122 56158.65625 0.2879009944975137 2 -0.01392364501953125 1 Oxidation (M) _HPHDLVILM(Oxidation (M))_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant 70.71552829651908 0.006026623598700661 2 {I|L}{I|L}V[QT]Q 6 7 24.381 0 0 2.2377 0 0 165.04783489300956 239.10340295963127 404.15123785264086 0 0 0 0 0 1.3494850021680094 0 1.1421590589602533 0.28872548999643577 {I|L}{I|L}V[QT]Q 2.2377 - 170 + NaN NaN 221273.7 NaN 6546 2575 9122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9127 46.498 NaN 964450 35 0 87003 0.327 + 585 APEREGSPAL 10 81 513.7652466914549 1025.5159404497097 2 513.7646484375 MULTI HCD FTMS 0 0 0 9126 313069.09375 0.5639249951646899 4 -0.0435638427734375 1 Unmodified _APEREGSPAL_ REV__ENST00000372491.3_1_9:131940446-131940530:-|nuORF 31.26834338654808 0.2211790902911672 2 APEEHPV 7 -1 57.757 0 0 5.632 0 0 0 263.1374191749495 263.1374191749495 25.071092977612835 0 0 0 0 2.4604093769761874 0 0.6989700043360187 0 APEEHPV 5.632 - 724 + NaN NaN 217192.9 NaN 6547 2578 9126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9128 46.502 NaN 400300 35 0 47583 0.261 -1 MPTQEVQEL 9 59 545.7579782170242 1089.5014035008483 2 545.7578125 MULTI HCD FTMS 0 0 0 9126 181533.75 0.642365127296902 8 -0.09904861450195312 2 Oxidation (M) _M(Oxidation (M))PTQEVQEL_ ENSG00000109046|ENST00000262394|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;nc|ENSG00000109046|Q9Y6I7-4|WSB1 29.84058131909904 0.11198220037953927 2 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L} 9 -1 + 48.975 0 0 4.4952 4.4952 82.599 0 0 0 6.9897000433601875 16.478174818886373 6.9897000433601875 2.2184874961635614 0 0.8807196863200843 0 0 0.3054621874040891 {[QN]|[E{I|L}]|[KN]}Q[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]VQE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}[AG][EC]VQE{I|L};{[QN]|[E{I|L}]|[KN]}Q[EC]V[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}E{[QC]|[C(Carbamidomethyl (C))A]}V[AG]E{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}GG[MD]VQE{I|L};{[QN]|[E{I|L}]|[KN]}N[MD]V[AG]E{I|L} 4.4952;4.2915;4.0112;3.8536;3.65;3.65;3.4464;3.3696;3.166;3.166 -;-;-;-;-;-;-;-;-;- 152 NaN NaN 160901.5 NaN 6548 2578 9126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9129 46.506 NaN 334950 35 0 74535 0.263 + 23702 RQNLRKYFF 9 62 424.57185500448384 1270.6937356136516 3 424.9061584472656 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 8.745405648335112 0.2847203663274469 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.8068 0 0 958.5464214415721 0 958.5464214415721 0 4.3753063169585005 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8068 + + 22 + NaN NaN 145939.3 NaN 6549 2578 9126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9130 46.509 NaN 351150 35 0 74935 0.261 + 27594 TAFPGTDKL 9 52 475.25323238286444 948.4919118325289 2 475.253173828125 MULTI HCD FTMS 0 0 0 9126 238265.390625 0.802557122450159 -1 0.00628662109375 4 Unmodified _TAFPGTDKL_ ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503 29.84058131909904 0.11198220037953927 2 [TA]{M(Oxidation (M))|F}P 4 5 43.188 0 0 4.5533 0 0 0 529.2603853815061 529.2603853815061 23.67931555708239 0 0 0 0 1 1.6989700043360187 0 0 + [TA]{M(Oxidation (M))|F}P 4.5533 + + 41 + NaN NaN 139136.8 NaN 6550 2578 9126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9133 46.52 NaN 4018100 35 0 207320 0.327 + 34257 YPDRIMNTF 9 124 586.7737544853795 1171.532956037559 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9132 3875020.5 0.862679608944393 -4 0.035297393798828125 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 176.4269993864032 3.292532597148328E-10 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 104.49 0 0 8.9187 8.9187 95.562 0 0 0 52.854809289064285 12.587418566968154 12.587418566968154 15.757659435244733 0 2.579689690656103 1.5228787452803376 1.73239816956497 1.2416440611282626 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 8.9187;7.5737;7.0005;6.4715;6.2145;6.1988;6.0716;5.7066;5.6855;5.5406 +;-;+;-;-;-;-;-;-;- + 13362 + NaN NaN 700317.8 NaN 6551 2580 9132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9134 46.525 NaN 664340 35 0 119120 0.262 + 24734 RYLVISEKL 9 99 560.8397896569764 1119.6650263807528 2 560.8401489257812 MULTI HCD FTMS 0 0 0 9132 574274.5625 0.29302424828208007 -9 0.08259201049804688 2 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 73.1962812333195 0.00805395026373928 2 [YR]{I|L}V{I|L}SEK{I|L} 9 0 + 71.225 0 0 6.3613 6.3613 85.658 0 0 0 2.685690803236298 12.51393987558032 2.685690803236298 2.685690803236298 0 2.110924374808178 0 0.805462187404089 0 + + [YR]{I|L}V{I|L}SEK{I|L};{I|L}[YR]V{I|L}SEK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVV{I|L}SEK{I|L};RY{I|L}V{I|L}SEK{I|L};RYV{I|L}{I|L}SEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]SEK{I|L};[YR]{I|L}V{I|L}ST[VG]{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[KQ]EK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVV{I|L}STR{I|L};[K{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]EK{I|L} 6.3613;6.1214;5.3218;5.2437;4.792;4.5568;4.2146;4.1775;3.9975;3.3213 +;-;-;+;-;-;-;-;-;- + 1286 NaN NaN 190886.7 NaN 6552 2580 9132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9136 46.529 NaN 64026000 35 0 7695900 0.327 + 558 APEEHPVLL 9 100 502.77415335255756 1003.5337537719151 2 502.7745666503906 MULTI HCD FTMS 0 0 0 9135 74915992 0.8021731703990915 7 -0.08690261840820312 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 154.46347324262513 4.107785341423729E-06 2 [PA]EEHPV{I|L}{I|L} 9 0 + 88.93 0 0 8.8617 8.8617 90.277 0 0 0 4.001538996710906 4.001538996710906 4.001538996710906 4.001538996710906 0 2.385151878060192 1.2218487496163564 1.329689690656103 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[VP]DDHPV{I|L}{I|L};[EP]AEH{I|L}VP{I|L};EEPAHPV{I|L}{I|L};[PA]EEH{I|L}V{I|L}P;[VP]HDDPV{I|L}{I|L} 8.8617;8.4629;7.8788;7.2573;7.0789;6.7479;6.0961;5.8989;5.7342;5.7247 +;+;-;-;-;-;-;-;-;- + 2634 NaN NaN 693869.2 NaN 6553 2581 9135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9137 46.534 NaN 1484100 35 0 150670 0.261 + 29223 TYLEKAIKI 9 90 539.828955876773 1077.6433588203458 2 539.8290405273438 MULTI HCD FTMS 0 0 0 9135 1273826.125 0.9951838519145548 1 -0.01235198974609375 2 Unmodified _TYLEKAIKI_ ENSG00000187555|ENST00000344836|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7 121.34585337138759 0.001129813327125052 2 [YT]{I|L}EKA{I|L}K{I|L} 9 0 + 100.96 0 0 9.3688 9.3688 89.527 0 0 0 0.999686271123096 0.999686271123096 0.999686271123096 0.999686271123096 0 2.6549471895720984 2 1.8371804965004639 0 + + [YT]{I|L}EKA{I|L}K{I|L};TY{I|L}EKA{I|L}K{I|L};{I|L}YTEKA{I|L}K{I|L};[Y{I|L}]TEKA{I|L}K{I|L};[YT]{I|L}E[{I|L}A]KK{I|L};TY{I|L}EK[K{I|L}]A{I|L};[Y{I|L}]TE[{I|L}A]KK{I|L};{[QN]|[E{I|L}]|[KN]}[YT]KA{I|L}K{I|L};{I|L}YTEK[K{I|L}]A{I|L};{[QN]|[E{I|L}]|[KN]}K[YT]A{I|L}K{I|L} 9.3688;9.276;7.0621;7.0534;6.7956;6.3709;4.4801;4.2515;4.1569;3.2762 +;+;-;-;-;-;-;-;-;- + 768 NaN NaN 310023.2 NaN 6554 2581 9135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9138 46.537 NaN 1402600 35 0 168540 0.261 + 24781 RYPDNLKHLYL 11 88 477.92975252221277 1430.7674281668383 3 478.26397705078125 MULTI HCD FTMS 0 0 0 9135 728813.375 0.3537876623671349 14 -0.21550369262695312 3 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 59.49591170135616 0.042424245816579324 2 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 79.473 0 0 5.5546 5.5546 86.909 0 0 0 0.7198415202650494 40.59441074981459 0.7198415202650494 9.128498242810991 0 2.3979400086720375 0 0.5 0.805462187404089 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L};[YR][DP]N{I|L}KHY{I|L}{I|L};[YR][DP]GG{I|L}KHY{I|L}{I|L};[Y{I|L}][HK]{I|L}N[DP]RY{I|L};[H{I|L}]KY{I|L}N[DP]RY{I|L};[H{I|L}]KY[RP][DN]{I|L}Y{I|L};[H{I|L}]KY{I|L}GG[DP]RY{I|L};[YR][KP]S[VS]YRY{I|L};[H{I|L}]K{[QV]|[N{I|L}]|[RA]|[KV]}Y[DP]RY{I|L} 5.5546;4.9166;4.6979;4.0599;3.2117;2.6162;2.3439;1.9782;1.755;1.6392 +;-;-;-;-;-;-;-;-;- + 983 NaN NaN 308056.3 NaN 6555 2581 9135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9141 46.548 NaN 1974600 35 0 164960 0.327 + 21816 QAQKDELIL 9 102 529.2980547435833 1056.5815565539665 2 529.2981567382812 MULTI HCD FTMS 0 0 0 9140 871676.625 0.3009498455549367 -9 0.07982254028320312 1 Unmodified _QAQKDELIL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF 96.36657018975838 0.004359138328518304 2 [QA]QKDE{I|L}{I|L}{I|L} 9 0 + 60.643 0 0 5.7396 5.7396 85.743 0 0 0 0.31498075193752584 31.341890379135933 0.31498075193752584 5.44486029786043 0 1.7843181179205065 0 1.5356668758921828 1.4802046884880937 + + [QA]QKDE{I|L}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[NV]|[RG]}E{I|L}{I|L}{I|L};[QA]KQDE{I|L}{I|L}{I|L};[QA][AG]KDE{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}D{[NV]|[RG]}E{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}DE{I|L}{I|L}{I|L};[QA]K[AG]DE{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}[DN]{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}D[DN]{I|L}{I|L}{I|L};{I|L}{I|L}EDKQ[QA]{I|L} 5.7396;5.2243;4.9019;4.8681;4.6544;4.5373;4.0304;3.7538;3.6101;2.3508 +;-;-;-;-;-;-;-;-;- + 1181 NaN NaN 396981.2 NaN 6556 2583 9140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9142 46.553 NaN 656720 35 0 114470 0.261 + 11842 KESTLHLVL 9 78 520.3108622044278 1038.6071714756556 2 520.3106689453125 MULTI HCD FTMS 0 0 0 9140 298712.1875 0.784239483891971 -3 0.028167724609375 2 Unmodified _KESTLHLVL_ ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000150991|ENST00000339647|UBC;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000170315|ENST00000302182|UBB;ENSG00000221983|ENST00000442744|UBA52;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF 75.76082778847304 0.0072241045649327805 2 QH{I|L}V{I|L} 5 5 55.851 0 0 5.3775 0 0 430.25679213691564 0 430.25679213691564 0 20.378448688514062 0 0 0 1.1549471895720984 0 0 1.1549471895720984 QH{I|L}V{I|L} 5.3775 - 198 NaN NaN 194455.7 NaN 6557 2583 9140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9143 46.556 NaN 657760 35 0 70508 0.261 + 1088 AYIERMNYI 9 76 594.7896777494806 1187.564802565761 2 594.7898559570312 MULTI HCD FTMS 0 0 0 9140 284494.5 0.6483148153410032 7 -0.08452224731445312 3 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 69.10491478415734 0.009377850133389008 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 64.447 0 0 5.4268 5.4268 83.376 0 0 0 15.231237988471378 15.231237988471378 15.231237988471378 0.9298626587642644 0 1.6549471895720984 2 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG][R{M(Oxidation (M))|F}]AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DN][{M(Oxidation (M))|F}V]AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[DV][{M(Oxidation (M))|F}V]AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DN]{I|L}[{M(Oxidation (M))|F}V]AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[DV][YT]C{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DN]{I|L}[YT]C{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[DV][YT]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DN]{I|L}[YT]{I|L}C{I|L} 5.4268;5.3485;4.76;4.6514;4.4441;4.4441;4.4312;4.4312;4.4119;4.4119 +;-;-;-;-;-;-;-;-;- + 547 NaN NaN 188166.9 NaN 6558 2583 9140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9144 46.56 NaN 419390 35 0 51960 0.261 + 1137 AYLEAHETF 9 87 540.7535201907347 1079.4924874482692 2 541.75634765625 MULTI HCD FTMS 0 0 0 9140 44381.8671875 0.11660772866460062 13 -0.21279525756835938 4 Unmodified _AYLEAHETF_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 54.773552608820026 0.024892918755467567 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[HA]ET{M(Oxidation (M))|F} 9 0 + 57.802 0 0 5.3545 5.3545 91.323 0 0 0 25.642492736872597 33.54934083125073 25.642492736872597 32.68614309909985 0 1.6989700043360187 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[HA]ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV][HV]ET{M(Oxidation (M))|F};[YT][PS][HV]ET{M(Oxidation (M))|F} 5.3545;2.3266;0.68055 +;-;- + 132 NaN NaN 147181.2 NaN 6559 2583 9140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9146 46.564 NaN 567190 35 0 56430 0.411 -1 PPLEPYHF 8 104 521.2540065244635 NaN 0 521.2539672851562 PEAK HCD FTMS 0 0 0 9145 140743.203125 0.6119985223815909 9 -0.13129043579101562 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PPLEPYHF_ ENST00000280346.10_1_11:111895897-111896233:+|nuORF 13.50788311687929 0.38822285293237185 2 V{I|L}HN 4 -1 22.735 0 0 2.185 0 0 131.97808650372764 442.2302340143188 574.2083205180464 0 0 0 0 0 0 0 0 0.8807196863200843 V{I|L}HN 2.185 - 91 + NaN NaN 259741.2 NaN 6560 2584 9145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9148 46.572 NaN 858100 35 0 116320 0.327 + 1993 DASGPDPQL 9 72 450.20885001211633 898.4031470910327 2 450.2088317871094 MULTI HCD FTMS 0 0 0 9147 1025766.4375 1 0 0 1 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 145.12958885780327 1.3974915176135797E-05 2 {[DA]|[EG]}SGPDPQ{I|L} 9 0 + 105.93 0 0 11.791 11.791 94.615 0 0 0 1.6049099258499666 1.6049099258499666 1.6049099258499666 9.208187539523749 0 3.0189301784845295 1.5228787452803376 1.6688265215345564 0 + + {[DA]|[EG]}SGPDPQ{I|L};{[DA]|[EG]}SGPDP[AG]{I|L};{[SA]|[TG]}DGPDPQ{I|L};{[SA]|[TG]}DGPDP[AG]{I|L};{[DA]|[EG]}SGP[PG]{[DA]|[EG]}{I|L};{[DA]|[EG]}SGP[PG]{I|L}{[DA]|[EG]};{[SA]|[TG]}DGP[PG]{[DA]|[EG]}{I|L};{[SA]|[TG]}DGP[PG]{I|L}{[DA]|[EG]} 11.791;10.766;9.4539;8.4289;7.328;5.9636;4.9911;3.6267 +;-;-;-;-;-;-;- + 353 NaN NaN 218981.5 NaN 6561 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9149 46.576 NaN 614290 35 0 161890 0.261 -1 VYRESLCL 8 64 512.7590325720455 NaN 0 512.7686157226562 PEAK HCD FTMS 0 0 0 9147 26511.951171875 0.5543941045069877 -1 0.0074462890625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VYRESLCL_ ENST00000494724.5_1_1:157666096-157666938:-|nuORF 20.453626601364224 0.3843868670602312 2 {I|L}E 2 -1 15.217 0 0 1.4867 0 0 131.07466393029512 647.2807332262831 778.3553971565782 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}E 1.4867 - 163 + NaN NaN 177854.1 NaN 6562 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9150 46.579 NaN 281560 35 0 78750 0.261 + 10484 IPDSALATAL 10 62 486.273963180633 970.533373428066 2 486.2743835449219 MULTI HCD FTMS 0 0 0 9147 205914.828125 0.7339001173367073 -5 0.05103302001953125 3 Unmodified _IPDSALATAL_ REV__ENSG00000067182|ENST00000162749|TNFRSF1A;REV__ENST00000536717.5_1_12:6438480-6440154:-|nuORF;REV__nc|ENSG00000067182|P19438-2|TNFRSF1A;REV__nc|ENSG00000067182|P19438-3|TNFRSF1A;REV__TNFRSF1A|p.N365Tfs*14|1|0.38|ENSG00000067182|chr12:6329586-6329586|T/-|frameshift_variant 49.93300154707207 0.07803319134556608 2 {I|L}PD 3 -1 52.664 0 0 5.4263 0 0 0 642.3462618463499 642.3462618463499 34.16386562212267 0 0 0 0 0.8494850021680094 1.5228787452803376 0.4247425010840047 0 {I|L}PD 5.4263 + + 32 + NaN NaN 146374.3 NaN 6563 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9151 46.583 NaN 604150 35 0 37328 0.261 + 1354 AYPHNLMTF 9 87 555.2577148688594 1108.5008768045186 2 555.258056640625 MULTI HCD FTMS 0 0 0 9147 279679.03125 0.1912093711580708 -9 0.08633041381835938 4 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 103.74828524460852 0.00396301343438984 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][QA]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 4 + 53.042 0 0 4.785 4.785 89.35 0 0 0 8.216423724123985 27.803418932560096 8.216423724123985 18.75681342852276 0 1.6989700043360187 2 0.75 0.2742275032520141 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV][QA]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[WP]{[QG]|[NA]}N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]PV[HN]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[HQ]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[RN][TP]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[{M(Oxidation (M))|F}H]|[RQ]}Y{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T{[QV]|[N{I|L}]|[RA]|[KV]}[YG]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}[YG]T{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T{[NV]|[RG]}[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T{[NV]|[RG]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F} 4.785;3.0929;3.0514;2.9726;2.8903;2.7807;2.4907;2.4193;1.8677;1.8602 -;-;-;-;-;-;-;-;-;- 886 NaN NaN 179689 NaN 6564 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9152 46.586 NaN 201070 35 0 22794 0.261 -1 LPDDPRQMTL 10 51 601.2976322298363 1200.5807115264724 2 601.2980346679688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 9.5439744041441 0.42184090036563754 2 {I|L}PDD 4 -1 36.414 0 0 3.0331 0 0 0 757.366190670925 757.366190670925 29.424712680444358 0 0 0 0 0.9247425010840047 0 0 0 {I|L}PDD 3.0331 + + 14 + NaN NaN 109178.1 NaN 6565 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9153 46.589 NaN 124210 35 0 11776 0.261 + 33401 YGNTLVEFR 9 54 549.782470322315 1097.55038771143 2 549.7830810546875 MULTI HCD FTMS 0 0 0 9147 37970.24609375 0.25308143141799894 2 -0.032623291015625 6 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 34.40172386719151 0.0910440009062557 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 45.956 0 0 4.1871 0 0 563.3070545880875 0 563.3070545880875 0 37.88364391835536 0 0 0 1.75 0 0.7742275032520141 0 VTN{[DS]|[MA]|[CV]|TT} 4.1871 - 35 NaN NaN 110252.8 NaN 6566 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9154 46.593 NaN 106460 35 0 16725 0.261 -1 LHCPDGHC 8 39 469.6841125488281 NaN 0 469.6841125488281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _LHCPDGHC(Carbamidomethyl (C))_ ENST00000535069.5_1_12:10583733-10588406:-|nuORF 0.7936320650641473 0.38822285293237185 2 R 1 -1 0.9691 0 0 0.1035 0 0 630.29102900215 146.93230615787346 777.2233351600235 0 0 0 0 0 0 0 0 0 R 0.1035 - 7 + NaN NaN 93552.9 NaN 6567 2585 9147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9157 46.604 NaN 309050 35 0 51905 0.327 + 23703 RQNLRKYFF 9 54 424.57185500448384 1270.6937356136516 3 424.5716857910156 MULTI HCD FTMS 0 0 0 9156 120063.2265625 0.8178518937084218 1 -0.012149810791015625 1 Unmodified _RQNLRKYFF_ REV__ENSG00000112701|ENST00000447266|SENP6;REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF;REV__nc|ENSG00000112701|Q9GZR1-2|SENP6;REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant 5.296884461304476 0.3108627248283497 2 {M(Oxidation (M))|F}E 2 -1 18.583 0 0 1.4625 0 0 976.5548558403418 0 976.5548558403418 0 3.098943791441968 0 0 0 0 0 0 0 {M(Oxidation (M))|F}E 1.4625 - 14 NaN NaN 134338.5 NaN 6568 2587 9156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9158 46.608 NaN 183500 35 0 14379 0.261 -1 MPDLENRVL 9 57 551.7818346604655 1101.549116387731 2 552.2833862304688 MULTI HCD FTMS 0 0 0 9156 20920.91015625 0.2995041177564027 -4 0.05548858642578125 2 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 22.65808497894818 0.16459551161911185 2 NE{I|L}D[EP] 6 -1 33.901 0 0 3.0776 0 0 386.26634413886876 0 386.26634413886876 0 9.208187539523749 0 0 0 0.8494850021680094 0 0 0 NE{I|L}D[EP] 3.0776 - 88 NaN NaN 117739.6 NaN 6569 2587 9156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9159 46.612 NaN 595580 35 0 110700 0.262 + 20561 PEEHPVLL 8 64 467.25572256868077 NaN 0 467.25579833984375 PEAK HCD FTMS 0 0 0 9156 79555.5234375 0.3182289754515941 13 -0.26438140869140625 3 Unmodified _PEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 77.98433622928108 0.12268388872977806 2 {I|L}VPHE 5 7 46.612 0 0 4.9987 0 0 131.0958694188866 223.0720156305297 354.1678850494163 0 0 0 0 0 1.3807196863200843 0 1.086696871556164 0 {I|L}VPHE 4.9987 - 32 + NaN NaN 182939.8 NaN 6570 2587 9156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9161 46.617 NaN 252640 35 0 13153 0.327 -1 0 73 531.5517806655246 2122.178016795698 4 531.5525512695312 MULTI HCD FTMS 0 0 0 9160 53515.8203125 0.4513039540143373 -1 0.012149810791015625 1 NaN NaN 2 Y{I|L} 2 -1 7.9588 0 0 0.37503 0 0 1283.7445583990168 559.2628267877561 1843.0073851867728 0 0 0 0 0 0 0 0 0 Y{I|L} 0.37503 - 14 + NaN NaN 120901.5 NaN 6571 2588 9160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9162 46.621 NaN 129190 35 0 15466 0.263 + 2332 DNEYTPFYY 9 54 404.5016286644003 1210.483056593401 3 404.5016174316406 MULTI HCD FTMS 0 0 0 9160 13140.4482421875 0.2769830988633824 1 -0.0093994140625 2 Unmodified _DNEYTPFYY_ REV__ENSG00000198839|ENST00000361822|ZNF277 1.1933415558491238 0.3419706357095994 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2792 0 0 1045.4042582308994 0 1045.4042582308994 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2792 + + 12 + NaN NaN 98859.7 NaN 6572 2588 9160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9164 46.626 NaN 150530 35 0 23088 0.411 + 33436 YGSRLDYFQ 9 57 574.772307175446 1147.530061417692 2 574.7718505859375 MULTI HCD FTMS 0 0 0 9163 21484.615234375 0.2274775544202944 5 -0.09607315063476562 1 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 10.073929032068715 0.27331982688540024 2 {[DS]|[MA]|[CV]|TT}SVR 5 7 27.447 0 0 2.3919 0 0 0 600.2188791269294 600.2188791269294 0.4968123769230459 0 0 0 0 0 1.3010299956639813 0 0 {[DS]|[MA]|[CV]|TT}SVR 2.3919 - 34 NaN NaN 137199.3 NaN 6573 2589 9163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9166 46.633 NaN 322960 35 0 82206 0.326 + 27595 TAFPGTDKL 9 43 475.25323238286444 948.4919118325289 2 475.2528991699219 MULTI HCD FTMS 0 0 0 9165 220728.25 0.7434861970459932 11 -0.2620201110839844 1 Unmodified _TAFPGTDKL_ ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503 29.84058131909904 0.11198220037953927 2 [TA]{M(Oxidation (M))|F}P 4 5 41.682 0 0 4.3946 0 0 0 529.2655733697874 529.2655733697874 19.47621246364342 0 0 0 0 1 1.6989700043360187 0 0 + [TA]{M(Oxidation (M))|F}P 4.3946 + + 33 + NaN NaN 134567.3 NaN 6574 2590 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9167 46.638 NaN 394360 35 0 34111 0.261 + 14382 LEEVWGYF 8 90 521.7471640025967 1041.4797750719933 2 521.7465209960938 MULTI HCD FTMS 0 0 0 9165 52480.8203125 0.19496717839875075 15 -0.36309814453125 2 Unmodified _LEEVWGYF_ ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3-2|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11 9.347437153973935 0.5250182646323369 2 {I|L}{I|L} 2 7 18.583 0 0 1.7843 0 0 0 812.289381253106 812.289381253106 1.1092437480817807 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.7843 - 48 + NaN NaN 155939.7 NaN 6575 2590 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9168 46.641 NaN 193050 35 0 38331 0.261 + 28480 TPPAHSSVF 9 55 471.7377448716558 941.4609368101117 2 471.7381896972656 MULTI HCD FTMS 0 0 0 9165 71362.296875 0.38718539189916196 -7 0.08452224731445312 3 Unmodified _TPPAHSSVF_ ENST00000377320.3_1_1:9713839-9714497:-|nuORF;nc|ENSG00000179840|Q5SR53|PIK3CD-AS1 7.910154910731844 0.2910521888787154 2 V{M(Oxidation (M))|F} 2 7 30.969 0 0 3.2895 0 0 677.3143741653836 0 677.3143741653836 0 23.521825181113627 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 3.2895 + + 13 + NaN NaN 117436.2 NaN 6576 2590 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9169 46.645 NaN 145470 35 0 19246 0.261 + 13100 KYLEMIYSM 9 42 605.2799966460213 1208.5454403588426 2 605.7822875976562 MULTI HCD FTMS 0 0 0 9165 48226.47265625 0.6080647183802064 -1 0.00748443603515625 4 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 57.24910588100465 0.021429789259086996 2 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 3 66.631 0 0 5.5133 0 0 404.2428150861344 0 404.2428150861344 0 56.17336295911841 0 0 0 2.3494850021680094 0 0.3494850021680094 0 + E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 5.5133 + + 63 NaN NaN 109628.3 NaN 6577 2590 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9170 46.648 NaN 146570 35 0 28990 0.264 -1 0 54 454.76307607059624 1815.023198415985 4 454.76318359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 0.74351 0 0 1649.9440033249678 0 1649.9440033249678 0 6.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.74351 - 16 + NaN NaN 120470.1 NaN 6578 2590 9165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9172 46.653 NaN 3769500 35 0 195300 0.327 + 34258 YPDRIMNTF 9 120 586.7737544853795 1171.532956037559 2 586.7740478515625 MULTI HCD FTMS 0 0 0 9171 2800927.25 0.623558720453658 7 -0.16248703002929688 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 192.32093250933514 2.3286398909669E-13 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 115.72 0 0 9.8775 9.8775 95.835 0 0 0 70.94122696813395 14.09256854528806 14.09256854528806 13.015384402724592 0 2.9559771852360797 1.6989700043360187 1.8620155761587907 1.2288559305164175 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 9.8775;8.7665;7.71;7.2644;6.9691;6.924;6.5925;6.3773;6.1831;6.1451 +;-;+;-;-;-;-;-;-;- + 21739 + NaN NaN 622935.2 NaN 6579 2591 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9173 46.657 NaN 2159400 35 0 453090 0.261 + 24735 RYLVISEKL 9 108 560.8397896569764 1119.6650263807528 2 560.8399047851562 MULTI HCD FTMS 0 0 0 9171 1841724.375 0.9397419557951582 2 -0.042942047119140625 2 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 139.78183599554657 1.962818552322152E-05 2 RY{I|L}V{I|L}SEK{I|L} 9 0 + 75.508 0 0 6.7438 6.7438 87.371 0 0 0 5.4058269257658935 7.778397915510993 5.4058269257658935 5.4058269257658935 0 2.56295299324845 0 1.9551120522087029 0.3494850021680094 + + RY{I|L}V{I|L}SEK{I|L};{I|L}[YR]V{I|L}SEK{I|L};RYV{I|L}{I|L}SEK{I|L};[YR]{I|L}V{I|L}SEK{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{I|L}[KQ]{M(Oxidation (M))|F}K{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]SEK{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[KQ]EK{I|L};{[ES]|[DT]|[{I|L}C]}K{I|L}[KQ]{M(Oxidation (M))|F}K{I|L};[YR]{I|L}V{I|L}ST[VG]{I|L};[K{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]EK{I|L} 6.7438;6.261;6.1066;6.0491;4.7967;4.7534;4.6712;4.48;4.198;4.0773 +;-;-;+;-;-;-;-;-;- + 1810 + NaN NaN 412431.8 NaN 6580 2591 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9174 46.661 NaN 116390 35 0 27437 0.263 + 35815 YYPRFSPFFF 10 42 457.5567884524929 1369.6485359576789 3 457.8915710449219 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YYPRFSPFFF_ ENSG00000189056|ENST00000428762|RELN;nc|ENSG00000189056|P78509-2|RELN;nc|ENSG00000189056|P78509-3|RELN;RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant 2.0860074813731053 0.46426213543441425 2 V{I|L} 2 10 20.969 0 0 1.531 0 0 1139.4843711856076 0 1139.4843711856076 0 7.870156338638594 0 0 0 0 0 0 0 V{I|L} 1.531 - 12 NaN NaN 100615.4 NaN 6581 2591 9171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9176 46.666 NaN 17527000 35 0 2199600 0.327 + 559 APEEHPVLL 9 99 502.77415335255756 1003.5337537719151 2 502.7746887207031 MULTI HCD FTMS 0 0 0 9175 16074135 0.1721159860550602 18 -0.46149444580078125 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 154.46347324262513 4.107785341423729E-06 2 [PA]EEHPV{I|L}{I|L} 9 0 + 88.296 0 0 8.7985 8.7985 89.874 0 0 0 3.0636321847129437 3.0636321847129437 3.0636321847129437 3.0636321847129437 0 2.363364334130467 1.3979400086720375 1.2881068352144718 0 + + [PA]EEHPV{I|L}{I|L};APEEHPV{I|L}{I|L};[EP]AEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[VP]DDHPV{I|L}{I|L};EEPAHPV{I|L}{I|L};[EP]AEH{I|L}VP{I|L};[EP]EAH{I|L}VP{I|L};[EP]E[HV]PA{I|L}{I|L} 8.7985;8.4932;7.6748;7.2632;6.8868;6.7192;6.0457;5.7632;5.3516;4.9264 +;+;-;-;-;-;-;-;-;- + 2096 NaN NaN 619345.3 NaN 6582 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9177 46.67 NaN 729650 35 0 67783 0.261 + 29224 TYLEKAIKI 9 82 539.828955876773 1077.6433588203458 2 539.8291015625 MULTI HCD FTMS 0 0 0 9175 394979.53125 0.30857998876163756 12 -0.2933349609375 2 Unmodified _TYLEKAIKI_ ENSG00000187555|ENST00000344836|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7 100.7086487251713 0.004245359191255521 2 TY{I|L}EKA{I|L}K{I|L} 9 0 + 97.379 0 0 9.0363 9.0363 91.334 0 0 0 6.235899786366232 6.235899786366232 6.235899786366232 6.235899786366232 0 2.853917193908117 2 0.8807196863200843 0.2742275032520141 + + TY{I|L}EKA{I|L}K{I|L};[YT]{I|L}EKA{I|L}K{I|L};{I|L}[YT]EKA{I|L}K{I|L};[YT]{I|L}E[{I|L}A]KK{I|L};{[QN]|[E{I|L}]|[KN]}[YT]KA{I|L}K{I|L};{[QN]|[E{I|L}]|[KN]}K[YT]A{I|L}K{I|L};[K{I|L}]E[YT]A{I|L}K{I|L};{[QN]|[E{I|L}]|[KN]}KA[YT]{I|L}K{I|L};[K{I|L}]EA[YT]{I|L}K{I|L};{[QN]|[E{I|L}]|[KN]}KAK{I|L}[YT]{I|L} 9.0363;8.4576;6.1335;5.9253;3.6119;2.9224;2.6431;2.4135;2.1341;2.0271 +;+;-;-;-;-;-;-;-;- + 346 + NaN NaN 184718.9 NaN 6583 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9178 46.674 NaN 507800 35 0 64028 0.261 + 24782 RYPDNLKHLYL 11 79 477.92975252221277 1430.7674281668383 3 477.9296569824219 MULTI HCD FTMS 0 0 0 9175 183814.125 0.06286969017680143 23 -0.5875816345214844 3 Unmodified _RYPDNLKHLYL_ ENSG00000133773|ENST00000256151|CCDC59;ENST00000552606.1_1_12:82750710-82752155:-|nuORF 25.43794494586266 0.23544076343172213 2 [YR][DP]N{I|L}KH{I|L}Y{I|L} 11 0 + 65.693 0 0 4.5915 4.5915 85.474 0 0 0 4.726216766418972 49.38216743533471 4.726216766418972 9.128498242811006 0 1.4247425010840047 0 0.5 0.3494850021680094 + + [YR][DP]N{I|L}KH{I|L}Y{I|L};[YR][DP]GG{I|L}KH{I|L}Y{I|L} 4.5915;3.9535 +;- + 158 NaN NaN 174379.5 NaN 6584 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9179 46.677 NaN 85528 35 0 7184.2 0.261 + 20058 NYIMKIHNF 9 46 590.3023495352951 NaN 0 590.3023071289062 PEAK HCD FTMS 0 0 0 9175 57752.5703125 0.5529374391698648 2 -0.05615234375 4 Unmodified _NYIMKIHNF_ ENSG00000101126|ENST00000621696|ADNP 39.94969957227396 0.07843668313024603 2 {I|L}M[K{I|L}]H 5 4 24.565 0 0 2.0843 0 0 277.1061123481797 276.09870325260005 553.2048156007797 0 0 0 0 0 1.774227503252014 0 0 0 + {I|L}M[K{I|L}]H 2.0843 + + 35 + NaN NaN 114331 NaN 6585 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9180 46.681 NaN 109740 35 0 6591.3 0.262 -1 ADKMDMSL 8 52 492.70411491427404 983.3936768953481 2 492.7046203613281 MULTI HCD FTMS 0 0 0 9175 56516.265625 0.6962615873448528 -10 0.123870849609375 5 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 6.2057823575117 0.5327852213979698 2 S{I|L} 2 -1 25.969 0 0 2.6408 0 0 765.2665917526447 0 765.2665917526447 0 21.365006360318688 0 0 0 0.5 0 0 0 S{I|L} 2.6408 + + 14 NaN NaN 108097.7 NaN 6586 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9181 46.684 NaN 136650 35 0 13227 0.261 + 1654 CCIIHPESL 9 53 507.73980394255716 1013.4650549519143 2 507.7400207519531 MULTI HCD FTMS 0 0 0 9175 15301.8583984375 0.25202877892706477 3 -0.07928085327148438 6 Unmodified _CCIIHPESL_ ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2 16.942295170755138 0.21397866736869717 2 S{I|L} 2 7 28.711 0 0 2.833 0 0 795.3395319837424 0 795.3395319837424 0 23.226825097560422 0 0 0 0.5 0 0.4247425010840047 0 + S{I|L} 2.833 + + 7 NaN NaN 117468.8 NaN 6587 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9182 46.687 NaN 178790 35 0 12008 0.261 + 32232 VYTQHQPFL 9 43 566.7930800134149 1131.5716070936296 2 566.79248046875 MULTI HCD FTMS 0 0 0 9175 86526.984375 0.7510062393007187 -1 0.01319122314453125 7 Unmodified _VYTQHQPFL_ ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45 47.748688679222035 0.03472022231463587 2 [YV]{I|L}QH[NP]YV 9 4 + 51.065 0 0 4.5128 4.5128 86.237 0 0 0 12.204226944476346 43.106662147943524 12.204226944476346 9.208187539523749 0 1.3494850021680094 2 0 0 [YV]{I|L}QH[NP]YV;[YV]{I|L}[AG]H[NP]YV 4.5128;3.699 -;- 83 NaN NaN 110723.2 NaN 6588 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9183 46.691 NaN 70835 35 0 6600 0.264 + 22628 QVIIFVKSVQR 11 41 439.60650756595066 1315.797693298052 3 440.2755126953125 MULTI HCD FTMS 0 0 0 9175 9764.3251953125 0.410088309508269 -2 0.032436370849609375 8 Unmodified _QVIIFVKSVQR_ ENSG00000123136|ENST00000242776|DDX39A;ENST00000587730.5_1_19:14520346-14520718:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF 1.9275035174196113 0.4104672908605315 2 V 1 10 6.9897 0 0 0.53121 0 0 634.3738784560584 579.3291694302386 1213.703047886297 0 0 0 0 0 0 0 0 0 + V 0.53121 + + 7 + NaN NaN 105078.4 NaN 6589 2592 9175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9185 46.696 NaN 3605500 35 0 407410 0.327 + 21817 QAQKDELIL 9 110 529.2980547435833 1056.5815565539665 2 529.298095703125 MULTI HCD FTMS 0 0 0 9184 2539238 0.8766820882999201 1 -0.026401519775390625 1 Unmodified _QAQKDELIL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF 155.02607137521346 3.513045939247001E-06 2 QKD{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 7 3 65.525 0 0 6.2016 0 0 181.0851307599625 0 181.0851307599625 0 26.996587083685164 0 0 0 0.75 0 1.416386562212267 1.2302046884880937 QKD{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 6.2016 - 2624 NaN NaN 654043.1 NaN 6590 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9186 46.7 NaN 479380 35 0 43260 0.261 + 1089 AYIERMNYI 9 61 594.7896777494806 1187.564802565761 2 594.78955078125 MULTI HCD FTMS 0 0 0 9184 92356.9140625 0.21046577591445384 17 -0.4317436218261719 2 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 55.50274090549119 0.023872834264864425 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L} 9 0 + 65.371 0 0 5.5047 5.5047 86.606 0 0 0 12.1051149383741 12.1051149383741 12.1051149383741 8.539171939081172 0 1.8935078169319297 1.6989700043360187 0 0.805462187404089 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}NY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERSCAY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ER{M(Oxidation (M))|F}GGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[VG]{M(Oxidation (M))|F}NY{I|L} 5.5047;4.7856;4.7293;4.7293 +;-;-;- + 120 NaN NaN 156887.4 NaN 6591 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9187 46.704 NaN 261630 35 0 30294 0.261 -1 LPDDPRQMTL 10 56 601.2976322298363 1200.5807115264724 2 601.7797241210938 MULTI HCD FTMS 0 0 0 9184 45622.640625 0.554191011050419 8 -0.19983291625976562 3 Oxidation (M) _LPDDPRQM(Oxidation (M))TL_ ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1 10.150570793230772 0.4161670024087991 2 {I|L}PDD{[WT]|[RM]}NV{[QN]|[E{I|L}]|[KN]} 10 -1 + 39.065 0 0 3.2538 3.2538 84.105 0 0 0 15.8771376077312 10.764837301042718 10.764837301042718 9.164539485499251 0 0.5 0 0.8252574989159953 0.5 {I|L}PDD{[WT]|[RM]}NV{[QN]|[E{I|L}]|[KN]};{I|L}PDD{[WT]|[RM]}GGV{[QN]|[E{I|L}]|[KN]} 3.2538;2.4905 -;- 128 + NaN NaN 126461 NaN 6592 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9188 46.707 NaN 192790 35 0 39805 0.263 -1 MPDLPEKL 8 53 479.74950118057643 957.4844494279529 2 479.74896240234375 MULTI HCD FTMS 0 0 0 9184 64515.28125 0.25380218162854584 24 -0.6141510009765625 4 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 19.256988751693697 0.45210759540527456 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}[C(Carbamidomethyl (C))K]K 7 -1 13.05 0 0 1.3629 0 0 0 146.08793998875288 146.08793998875288 -1.6347088481359133 0 -1.6347088481359133 0 0 0 2 0.3494850021680094 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}[C(Carbamidomethyl (C))K]K 1.3629 - 66 NaN NaN 112232.9 NaN 6593 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9189 46.711 NaN 403020 35 0 81327 0.261 + 21398 PVLIMDQHVLF 11 66 437.9088836594934 1310.7048215786804 3 437.90936279296875 MULTI HCD FTMS 0 0 0 9184 76733.8203125 0.45594652899723903 -12 0.16597366333007812 5 Unmodified _PVLIMDQHVLF_ REV__ENSG00000118492|ENST00000397944|ADGB;REV__nc|ENSG00000118492|Q8N7X0-2|ADGB 4.715918219556657 0.3982382512160552 2 [VP]{I|L}AH 5 -1 27.28 0 0 2.0813 0 0 0 790.3816763972928 790.3816763972928 3.6966623150499345 0 0 0 0 0 1.6989700043360187 0 0 [VP]{I|L}AH 2.0813 - 61 NaN NaN 138812.3 NaN 6594 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9190 46.714 NaN 292790 35 0 63675 0.261 + 24920 RYSGNQVLF 9 47 542.2829325268546 1082.551312120509 2 542.2825317382812 MULTI HCD FTMS 0 0 0 9184 100138.046875 0.5875678301218733 -4 0.069671630859375 6 Unmodified _RYSGNQVLF_ ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant 18.1463463914782 0.20357593197100715 2 V{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.3438 0 0 705.3204212873062 0 705.3204212873062 0 31.593793813122062 0 0 0 1 0 0 0 + V{I|L}{M(Oxidation (M))|F} 3.3438 + + 23 NaN NaN 138582.7 NaN 6595 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9191 46.717 NaN 114220 35 0 11180 0.261 + 12620 KVPPAINQF 9 55 507.2919592433897 NaN 0 507.2912292480469 PEAK HCD FTMS 0 0 0 9184 28185.53515625 0.4025111058078882 5 -0.11954498291015625 7 Unmodified _KVPPAINQF_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF 19.256988751693697 0.19238547928067054 2 P 1 8 11.237 0 0 1.1098 0 0 227.1636923614828 685.3306368463499 912.4943292078326 0 0 0 0 0 0.4247425010840047 0 0 0 + P 1.1098 + + 4 + NaN NaN 111619.3 NaN 6596 2593 9184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9193 46.722 NaN 2371200 35 0 186390 0.327 + 1355 AYPHNLMTF 9 94 555.2577148688594 1108.5008768045186 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9192 1462684.75 1 0 0 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 166.44778350782605 5.759113011535275E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 105.87 0 0 9.5506 9.5506 96.037 0 0 0 24.76203644159419 45.28537168208722 24.76203644159419 15.203037561203843 0 2.754432191740108 2 0.4247425010840047 0.5994850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[RN][TP]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TAY{M(Oxidation (M))|F};[WP]{[QG]|[NA]}N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9.5506;8.1791;6.3943;6.2753;5.9428;5.4743;5.2719;5.2702;5.2246;5.0877 +;-;-;-;-;-;-;-;-;- + 4256 NaN NaN 436844.5 NaN 6597 2594 9192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9194 46.727 NaN 207780 35 0 25177 0.262 + 1994 DASGPDPQL 9 46 450.20885001211633 898.4031470910327 2 450.20867919921875 MULTI HCD FTMS 0 0 0 9192 177825.84375 0.17335899991366213 9 -0.22029495239257812 2 Unmodified _DASGPDPQL_ ENSG00000082068|ENST00000265107|WDR70;ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF 86.33184430468982 0.004622086694044132 2 {[DA]|[EG]}SGPD[QP]{I|L} 9 0 + 77.959 0 0 8.6775 8.6775 96.222 0 0 0 4.815534464597704 4.815534464597704 4.815534464597704 24.247425010840047 0 2.5669015600442577 1.3979400086720375 1.1989700043360187 0 + + {[DA]|[EG]}SGPD[QP]{I|L};{[SA]|[TG]}DGPD[QP]{I|L} 8.6775;5.9786 +;- + 132 NaN NaN 125256.4 NaN 6598 2594 9192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9195 46.73 NaN 195720 35 0 35891 0.261 -1 GPYKSSCLI 9 55 512.7590325720455 NaN 0 512.7687377929688 PEAK HCD FTMS 0 0 0 9192 13737.384765625 0.28726384851998005 8 -0.18684005737304688 3 Carbamidomethyl (C) _GPYKSSC(Carbamidomethyl (C))LI_ ENSG00000283439|ENST00000636696|SPEM3 10.823927491677226 0.2427956001690155 2 {I|L}E 2 -1 13.271 0 0 1.2966 0 0 131.07462133686823 647.2815645807249 778.3561859175932 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}E 1.2966 - 19 + NaN NaN 114671.8 NaN 6599 2594 9192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9196 46.734 NaN 209290 35 0 57377 0.261 + 10485 IPDSALATAL 10 50 486.273963180633 970.533373428066 2 486.2740173339844 MULTI HCD FTMS 0 0 0 9192 99318.4765625 0.35398053781087685 4 -0.09314346313476562 4 Unmodified _IPDSALATAL_ REV__ENSG00000067182|ENST00000162749|TNFRSF1A;REV__ENST00000536717.5_1_12:6438480-6440154:-|nuORF;REV__nc|ENSG00000067182|P19438-2|TNFRSF1A;REV__nc|ENSG00000067182|P19438-3|TNFRSF1A;REV__TNFRSF1A|p.N365Tfs*14|1|0.38|ENSG00000067182|chr12:6329586-6329586|T/-|frameshift_variant 43.85829265575387 0.11192494793849486 2 {I|L}PDD 4 -1 53.66 0 0 5.5289 0 0 0 527.3200167291624 527.3200167291624 33.39902832107995 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 {I|L}PDD 5.5289 - 53 + NaN NaN 112787.7 NaN 6600 2594 9192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9197 46.737 NaN 192100 35 0 35176 0.261 -1 MPDLPEKL 8 62 479.74950118057643 957.4844494279529 2 479.74932861328125 MULTI HCD FTMS 0 0 0 9192 53850.96484375 0.21184891540941508 25 -0.6408729553222656 5 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 22.736283301280096 0.42650828432173493 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GT 4 -1 25.662 0 0 2.6801 0 0 0 562.2902715317216 562.2902715317216 -1.554556341805764 0 -1.554556341805764 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GT 2.6801 - 56 NaN NaN 113403.9 NaN 6601 2594 9192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9198 46.74 NaN 60265 35 0 5726.7 0.261 + -1 QICEECCCCC 10 33 625.6755538193277 NaN 0 626.0091552734375 PEAK HCD FTMS 0 0 0 9192 7001.68017578125 0.5246636277433038 1 -0.023128509521484375 6 2 Carbamidomethyl (C) _QIC(Carbamidomethyl (C))EEC(Carbamidomethyl (C))CCCC_ REV__ENSG00000170775|ENST00000303921|GPR37 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92235.3 NaN 6602 2594 9192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9200 46.745 NaN 153830 35 0 19583 0.327 -1 MPDLENRVL 9 53 551.7818346604655 1101.549116387731 2 551.7822265625 MULTI HCD FTMS 0 0 0 9199 86510.3203125 0.6875398150569648 5 -0.12363052368164062 1 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 23.789781309258295 0.1548179064208189 2 E{I|L}DPE 5 -1 39.024 0 0 3.5426 0 0 500.30719189767586 0 500.30719189767586 0 32.034021960761265 0 0 0 0.805462187404089 0 0 0 E{I|L}DPE 3.5426 - 44 NaN NaN 111142.6 NaN 6603 2595 9199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9201 46.75 NaN 241400 35 0 17378 0.261 + 9395 HPTGKMFIL 9 71 522.289138890231 1042.563724847262 2 522.2886962890625 MULTI HCD FTMS 0 0 0 9199 67984.03125 0.6860686365393078 2 -0.039867401123046875 2 Unmodified _HPTGKMFIL_ ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF 27.628801355627647 0.12213550946336599 2 TC{I|L} 3 7 35.93 0 0 3.4463 0 0 707.4033369203992 0 707.4033369203992 0 30.356668758921828 0 0 0 0.5 0 0.7742275032520141 0 TC{I|L} 3.4463 - 22 NaN NaN 124695 NaN 6604 2595 9199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9202 46.754 NaN 153220 35 0 23761 0.262 + 24837 RYPSLWRRL 9 43 416.2436853655056 1245.7092266967168 3 416.2437438964844 MULTI HCD FTMS 0 0 0 9199 13936.90625 0.4058414539207001 5 -0.12363052368164062 3 Unmodified _RYPSLWRRL_ ENSG00000099956|ENST00000644036|SMARCB1;nc|ENSG00000099956|Q12824-2|SMARCB1 4.897010918128616 0.31389406404703984 2 {I|L} 1 8 13.979 0 0 1.1222 0 0 1114.6143760881214 0 1114.6143760881214 0 0 0 0 0 0 0 0 0 + {I|L} 1.1222 + + 9 + NaN NaN 101467.1 NaN 6605 2595 9199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9203 46.757 NaN 62022 35 0 6156.5 0.261 + -1 YLARMQEQL 9 44 584.2951625623076 1166.5757721914151 2 584.2947387695312 MULTI HCD FTMS 0 0 0 9199 18049.35546875 0.3664203502513005 3 -0.07001495361328125 4 Oxidation (M) _YLARM(Oxidation (M))QEQL_ REV__DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant;REV__ENSG00000096696|ENST00000379802|DSP;REV__nc|ENSG00000096696|P15924-2|DSP;REV__nc|ENSG00000096696|P15924-3|DSP 11.494710602746466 0.2610445893512368 2 Q{M(Oxidation (M))|F}EQ{I|L} 5 -1 33.232 0 0 2.8487 0 0 503.2860279767594 0 503.2860279767594 0 26.242209500285014 0 0 0 0.3054621874040891 0 0 0 Q{M(Oxidation (M))|F}EQ{I|L} 2.8487 - 27 NaN NaN 92810.4 NaN 6606 2595 9199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9205 46.762 NaN 273310 35 0 38542 0.327 + 15250 LPAAGVGDMVM 11 69 546.756757525833 1091.498962118466 2 546.7567138671875 MULTI HCD FTMS 0 0 0 9204 92920.84375 0.07860862952826156 -9 0.15730667114257812 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 78.7280429016045 0.006868779721450025 2 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 3 73.325 0 0 6.7179 0 0 281.17341811347814 0 281.17341811347814 0 62.46419013554393 0 0 0 2.943672679568534 0 0.4247425010840047 0 + AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.7179 + + 192 NaN NaN 132548.4 NaN 6607 2596 9204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9206 46.766 NaN 102070 35 0 19771 0.261 + 27596 TAFPGTDKL 9 36 475.25323238286444 948.4919118325289 2 475.2533264160156 MULTI HCD FTMS 0 0 0 9204 41583 0.14006538144421268 17 -0.43526458740234375 2 Unmodified _TAFPGTDKL_ ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503 12.240655878213236 0.2545997876781172 2 [TA]{M(Oxidation (M))|F} 3 6 37.447 0 0 3.9481 0 0 0 626.3163191413757 626.3163191413757 19.488474775526186 0 0 0 0 1 1.6989700043360187 0 0 + [TA]{M(Oxidation (M))|F} 3.9481 + + 14 NaN NaN 95711.6 NaN 6608 2596 9204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9207 46.77 NaN 87471 35 0 24367 0.261 + 35564 YYHSPPHLPPY 11 32 457.5567884524929 1369.6485359576789 3 457.55682373046875 MULTI HCD FTMS 0 0 0 9204 32064.361328125 0.7966829031854499 1 -0.023311614990234375 3 Unmodified _YYHSPPHLPPY_ ENSG00000125355|ENST00000371369|TMEM255A;nc|ENSG00000125355|Q5JRV8-2|TMEM255A;nc|ENSG00000125355|Q5JRV8-4|TMEM255A;nc|ENSG00000125355|Q5JRV8|TMEM255A 1.4551175022131473 0.41253901545122046 2 YY{I|L} 3 8 23.952 0 0 1.7488 0 0 0 927.4071168505101 927.4071168505101 9.973024840566467 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 1.7488 - 5 NaN NaN 92314.6 NaN 6609 2596 9204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9208 46.774 NaN 173290 35 0 27901 0.261 -1 0 43 416.22768673965174 1245.6612308191552 3 416.2281494140625 MULTI HCD FTMS 0 0 0 9204 29978.720703125 0.5094989418069154 -4 0.09583663940429688 4 NaN NaN 2 {I|L} 1 -1 20.485 0 0 1.6445 0 0 1114.566685386341 0 1114.566685386341 0 15 0 0 0 0.5 0 0 0 {I|L} 1.6445 - 5 + NaN NaN 110072.7 NaN 6610 2596 9204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9209 46.777 NaN 43181 35 0 5927.3 0.261 + -1 HHDDLLSGTM 10 38 571.252374727419 1140.490196521638 2 571.252197265625 MULTI HCD FTMS 0 0 0 9204 5613.65283203125 0.12921379241204692 4 -0.10707473754882812 5 Oxidation (M) _HHDDLLSGTM(Oxidation (M))_ REV__ENSG00000174469|ENST00000361727|CNTNAP2 3.5964929083625545 0.45626689593999237 2 RT[{M(Oxidation (M))|F}T] 4 -1 13.812 0 0 1.2111 0 0 617.255662986525 0 617.255662986525 0 13.812281309285623 0 0 0 0 0 0 0 RT[{M(Oxidation (M))|F}T] 1.2111 - 4 NaN NaN 96401 NaN 6611 2596 9204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9210 46.78 NaN 122720 35 0 18340 0.261 + 33437 YGSRLDYFQ 9 48 574.772307175446 1147.530061417692 2 574.7723388671875 MULTI HCD FTMS 0 0 0 9204 18056.966796875 0.1911858603187628 12 -0.322723388671875 6 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 10.073929032068715 0.27331982688540024 2 {[DS]|[MA]|[CV]|TT}[HV][R{M(Oxidation (M))|F}]VS{[DS]|[MA]|[CV]|TT} 10 9 {[DS]|[MA]|[CV]|TT}[HV][R{M(Oxidation (M))|F}]V + + 26.695 -6.2864 -0.74802 2.3263 2.3263 59.831 0 0 0 0 15.457574905606748 0 0 0 1 0 0.9247425010840047 0 {[DS]|[MA]|[CV]|TT}[HV][R{M(Oxidation (M))|F}]VS{[DS]|[MA]|[CV]|TT} 2.3263 - 35 + NaN NaN 124918.6 NaN 6612 2596 9204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9212 46.785 NaN 1118900 35 0 65835 0.327 + 34259 YPDRIMNTF 9 106 586.7737544853795 1171.532956037559 2 586.7742309570312 MULTI HCD FTMS 0 0 0 9211 669456.875 0.14903838447567835 13 -0.34234619140625 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 166.76915356408847 5.584250141028017E-09 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 105.38 0 0 8.9948 8.9948 94.239 0 0 0 64.58785637524657 12.252684618815081 12.252684618815081 9.746279724987545 0 3.1747425010840047 1.5228787452803376 1.9938375422051386 0.9392404878284264 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 8.9948;8.1629;7.9312;7.6283;7.3769;6.8423;6.839;6.4292;6.4133;6.3044 +;+;-;-;-;-;-;-;-;- + 6720 + NaN NaN 255517.4 NaN 6613 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9213 46.79 NaN 433430 35 0 71039 0.261 + 1131 AYLDKSPQF 9 69 534.7716299282024 1067.5287069232047 2 534.7716064453125 MULTI HCD FTMS 0 0 0 9211 191989.265625 0.8611916634957744 -1 0.023311614990234375 2 Unmodified _AYLDKSPQF_ ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF 80.6760300276096 0.005633624786464751 2 AY{I|L}DKS[QP]{M(Oxidation (M))|F} 9 0 + 106.82 0 0 10.006 10.006 95.842 0 0 0 24.235162698957282 12.781512503836439 12.781512503836439 12.781512503836439 0 2.6989700043360187 2 0.3494850021680094 0.7742275032520141 + + AY{I|L}DKS[QP]{M(Oxidation (M))|F};AY{I|L}DKS{M(Oxidation (M))|F}[QP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DKS[QP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DK[QP]S{M(Oxidation (M))|F};AY[VG]S{I|L}S[QP]{M(Oxidation (M))|F};AY[VG]S{I|L}S{M(Oxidation (M))|F}[QP];AY{I|L}D[PA]{[HG]|PP}[QP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]S[EP]AK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]S{I|L}[QP]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]S{I|L}S[QP]{M(Oxidation (M))|F} 10.006;8.809;7.7361;7.0563;6.5904;5.3931;5.3035;5.3023;5.1864;5.0706 +;-;+;-;-;-;-;-;-;- + 576 + NaN NaN 159422.6 NaN 6614 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9214 46.794 NaN 138890 35 0 17335 0.262 + 13101 KYLEMIYSM 9 41 605.2799966460213 1208.5454403588426 2 605.2802124023438 MULTI HCD FTMS 0 0 0 9211 46420.40625 0.46981750072586015 2 -0.056888580322265625 3 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 59.368380827593164 0.01846506874148156 2 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 3 63.703 0 0 5.271 0 0 404.23893508716134 0 404.23893508716134 0 42.733871898888154 0 0 0 2.504432191740108 0 1.1747425010840047 0 + E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 5.271 + + 60 + NaN NaN 123085.1 NaN 6615 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9215 46.797 NaN 102100 35 0 10567 0.261 + 5838 FPDATTTAKQL 11 50 596.8141866009643 1191.6138202687284 2 596.81396484375 MULTI HCD FTMS 0 0 0 9211 71852.3125 1 0 0 4 Unmodified _FPDATTTAKQL_ ENSG00000112297|ENST00000633556|CRYBG1 39.922945255915025 0.13744631790999062 2 TADPE 5 9 37.128 0 0 3.1157 0 0 660.3805409162125 0 660.3805409162125 0 7.702789364562065 0 0 0 0.6694451763165201 0 0 0 TADPE 3.1157 - 44 NaN NaN 105454.5 NaN 6616 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9216 46.8 NaN 316280 35 0 86710 0.261 + 21997 QFCMFEYPL 9 61 589.2559079708881 1176.497263008576 2 589.2567749023438 MULTI HCD FTMS 0 0 0 9211 102192.171875 0.5447398361524136 -3 0.06299591064453125 5 Unmodified _QFCMFEYPL_ ENST00000561721.6_1_17:75089357-75138808:+|nuORF 19.256988751693697 0.19398022840297344 2 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 6 55.133 0 0 4.6862 0 0 496.2201405255875 0 496.2201405255875 0 44.03135216578299 0 0 0 1.305462187404089 0 0.7614393726401688 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 4.6862 - 135 NaN NaN 140390.3 NaN 6617 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9217 46.804 NaN 155620 35 0 14864 0.261 -1 0 53 531.5517806655246 2122.178016795698 4 531.552490234375 MULTI HCD FTMS 0 0 0 9211 38171.81640625 0.32190652363084765 8 -0.21151351928710938 6 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.25844 0 0 1193.682711521891 812.3891085260374 2006.0718200479282 0 0 0 0 0 0 0 0 0 {I|L} 0.25844 - 13 + NaN NaN 106002.9 NaN 6618 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9218 46.807 NaN 131270 35 0 8252.5 0.261 + 24976 RYTYSEWHSF 10 58 459.20677532080657 NaN 0 459.2071533203125 PEAK HCD FTMS 0 0 0 9211 35073.4296875 0.9511438559322034 1 -0.030147552490234375 7 Unmodified _RYTYSEWHSF_ ENSG00000134755|ENST00000280904|DSC2;ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134755|Q02487-2|DSC2;nc|ENSG00000134762|Q14574-2|DSC3 25.997395711884035 0.23205345001364247 2 SEWHS 5 5 14.949 0 0 1.6312 0 0 125.0753920084763 162.05588709049064 287.13127909896696 0 0 0 0 0 0 0 0 0 + SEWHS 1.6312 + + 35 + NaN NaN 101562.4 NaN 6619 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9219 46.81 NaN 130950 35 0 30826 0.261 + 3973 EQYLEVELCPH 11 49 453.88123817792405 1358.6218851339722 3 454.5507507324219 MULTI HCD FTMS 0 0 0 9211 14171.69140625 0.6967945212188492 1 -0.030147552490234375 8 Unmodified _EQYLEVELCPH_ ENSG00000151470|ENST00000425929|C4orf33 1.3296431237094175 0.4130893034510334 2 E 1 10 0.9691 0 0 0.07133 0 0 1064.0765798134628 162.47316919498283 1226.5497490084456 0 0 0 0 0 0 0 0 0 + E 0.07133 + + 7 + NaN NaN 109653.6 NaN 6620 2597 9211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9221 46.815 NaN 4797100 35 0 581050 0.327 + 560 APEEHPVLL 9 106 502.77415335255756 1003.5337537719151 2 502.77459716796875 MULTI HCD FTMS 0 0 0 9220 3281430.25 0.035136360566192376 24 -0.6172523498535156 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 146.00731375242447 1.3047045798573153E-05 2 APEEHPV{I|L}{I|L} 9 0 + 73.713 0 0 7.3454 7.3454 93.629 0 0 0 23.38090859114196 14.72234667441434 14.72234667441434 18.738350322034236 0 2.385151878060192 1.3979400086720375 0.9049471895720984 0 + + APEEHPV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[EP]E[HV]PA{I|L}{I|L};{[YC]|[HE]}E[VP]PA{I|L}{I|L};[VP]{I|L}AHEEP{I|L};[VP]{I|L}AHEPE{I|L};EEPAHPV{I|L}{I|L};[EP]E[HV]P{I|L}A{I|L};[EP]EAH{I|L}VP{I|L} 7.3454;5.4781;4.967;4.8057;4.6117;4.4097;4.3641;4.1817;4.0075;3.8804 +;-;-;-;-;-;-;-;-;- + 1647 + NaN NaN 617887.6 NaN 6621 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9222 46.82 NaN 467620 35 0 93200 0.261 + 24736 RYLVISEKL 9 67 560.8397896569764 1119.6650263807528 2 560.8400268554688 MULTI HCD FTMS 0 0 0 9220 261645.140625 0.1335047304107254 9 -0.23942184448242188 2 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 55.23464941255904 0.024247875903973527 2 V{I|L}SEK{I|L} 6 3 65.878 0 0 5.8838 0 0 432.24934584785314 0 432.24934584785314 0 34.680475292681265 0 0 0 1.774227503252014 0 0.8494850021680094 0 + V{I|L}SEK{I|L} 5.8838 + + 157 NaN NaN 158674.8 NaN 6622 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9223 46.824 NaN 1030100 35 0 120630 0.261 + 32328 VYVERAEVL 9 79 539.3006290958108 1076.5867052584215 2 539.3009033203125 MULTI HCD FTMS 0 0 0 9220 429676.96875 0.6411053337167937 -2 0.05345916748046875 3 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 107.09958533191995 0.0034159042678574016 2 VYVERAEV{I|L} 9 0 + 95.598 0 0 8.8797 8.8797 89.25 0 0 0 1.5285725003505775 1.5285725003505775 1.5285725003505775 1.5285725003505775 0 3.1237125054200234 1.6989700043360187 1.1445990182825423 0.2614393726401688 + + VYVERAEV{I|L};[YV]VERAEV{I|L};[YV]VERAE{I|L}V;[YV]VERA{I|L}D{I|L};[YV]VERA{I|L}EV;{NN|[MP]|[D{I|L}]|[EV]}[YV]RAEV{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YV]RAE{I|L}V;{NN|[MP]|[D{I|L}]|[EV]}[YR]VAEV{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YV]RA{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]VAE{I|L}V 8.8797;8.7378;7.97;7.3931;6.6253;3.9523;3.1845;3.1607;2.6077;2.3929 +;+;-;-;-;-;-;-;-;- + 1266 + NaN NaN 235261.9 NaN 6623 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9224 46.827 NaN 285660 35 0 84227 0.261 + 32925 YAGEVRTF 8 52 471.7377448716558 941.4609368101117 2 471.7377014160156 MULTI HCD FTMS 0 0 0 9220 150699.90625 0.8176418755519942 1 -0.02674102783203125 4 Unmodified _YAGEVRTF_ ENSG00000232434|ENST00000436881|AJM1 12.531546534597751 0.5015908124873912 2 V{M(Oxidation (M))|F} 2 6 30.969 0 0 3.2895 0 0 677.3136417435086 0 677.3136417435086 0 23.521825181113627 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 3.2895 - 20 + NaN NaN 130801.1 NaN 6624 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9225 46.831 NaN 118350 35 0 8522.2 0.261 + 33402 YGNTLVEFR 9 52 549.782470322315 1097.55038771143 2 549.7824096679688 MULTI HCD FTMS 0 0 0 9220 45213.484375 0.30135947280320174 15 -0.381805419921875 5 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 27.628801355627647 0.12213550946336599 2 TN{[DS]|[MA]|[CV]|TT} 4 7 42.193 0 0 3.8443 0 0 662.3744366389675 0 662.3744366389675 0 35.20303756120384 0 0 0 1.5 0 0.3494850021680094 0.75 TN{[DS]|[MA]|[CV]|TT} 3.8443 - 39 + NaN NaN 102260.3 NaN 6625 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9226 46.834 NaN 258370 35 0 57747 0.261 + 20587 PEKFQHIL 8 59 506.2845102195153 1010.5544675058306 2 506.2845764160156 MULTI HCD FTMS 0 0 0 9220 72658.9296875 0.7886577057538429 -2 0.05345916748046875 6 Unmodified _PEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 45.69961567697781 0.1577113171574352 2 [EP]K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L} 8 0 + 64.416 0 0 6.3744 6.3744 87.969 0 0 0 8.291812460476251 8.291812460476251 8.291812460476251 8.291812460476251 0 1.6549471895720984 1.6989700043360187 0 0.3252574989159953 + + [EP]K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L};PEK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L};[TP][VG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H{I|L}{I|L};[H{I|L}][Q{I|L}][YQ]P{I|L} 6.3744;5.5538;3.0584;0.38468 +;+;-;- + 68 NaN NaN 132409.4 NaN 6626 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9227 46.837 NaN 100100 35 0 13279 0.261 + 15291 LPAGEESEEGP 11 40 557.7477242342312 1113.4808955352623 2 557.7490844726562 MULTI HCD FTMS 0 0 0 9220 23591.53515625 0.1696302028978929 -6 0.14929580688476562 7 Unmodified _LPAGEESEEGP_ REV__ENST00000297107.10_1_5:153797146-153797353:+|nuORF 8.745405648335112 0.3805662881914433 2 {I|L}PAAR 5 -1 54.341 0 0 4.8803 0 0 0 602.1560152643186 602.1560152643186 34.87695494332455 0 0 0 0 1.6382104921644451 0 0 0 {I|L}PAAR 4.8803 - 33 + NaN NaN 98879.6 NaN 6627 2598 9220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9229 46.842 NaN 1030900 35 0 141350 0.327 + 21818 QAQKDELIL 9 92 529.2980547435833 1056.5815565539665 2 529.2982788085938 MULTI HCD FTMS 0 0 0 9228 480540.53125 0.1659085428183585 7 -0.18914794921875 1 Unmodified _QAQKDELIL_ ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF 89.40071534611396 0.0045416704840156395 2 {[QN]|[E{I|L}]|[KN]}D{[NV]|[RG]}E{I|L}{I|L}{I|L} 9 4 + 59.559 0 0 5.637 5.637 84.663 0 0 0 0.7304627082981696 31.261457961086617 0.7304627082981696 3.0423595621581256 0 1.0451140161145327 0.958607314841775 1.416386562212267 1.1747425010840047 {[QN]|[E{I|L}]|[KN]}D{[NV]|[RG]}E{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}[DN]{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}D[DN]{I|L}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[NV]|[RG]}E{I|L}{I|L}{I|L};{I|L}{I|L}EDKQ[QA]{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}KQ[QA]{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}DKQ[QA]{I|L};[{I|L}T]QQ[DN]{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}DK{I|L}Q[QA]{I|L};{I|L}{I|L}EDK[AG][QA]{I|L} 5.637;5.349;5.3032;4.3265;3.5168;3.3568;3.3109;2.9878;2.8619;2.6452 -;-;-;-;-;-;-;-;-;- 1133 NaN NaN 236753.7 NaN 6628 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9230 46.847 NaN 996200 35 0 183300 0.261 + 10504 IPEKFQHIL 9 80 562.8266960944915 1123.6388392557828 2 562.826904296875 MULTI HCD FTMS 0 0 0 9228 403520.53125 0.9519439472730096 -1 0.02674102783203125 2 Unmodified _IPEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 103.41943736471063 0.004016698775839292 2 [{I|L}P]EK{M(Oxidation (M))|F}QH{I|L}{I|L} 9 0 + 92.723 0 0 8.252 8.252 88.71 0 0 0 2.0388582102042676 16.478174818886373 2.0388582102042676 2.0388582102042676 0 2.4247425010840047 1.3979400086720375 1.0189301784845295 0.3494850021680094 + + [{I|L}P]EK{M(Oxidation (M))|F}QH{I|L}{I|L};{I|L}PEK{M(Oxidation (M))|F}QH{I|L}{I|L};[{I|L}P]EK{M(Oxidation (M))|F}[AG]H{I|L}{I|L};[{I|L}P]TRWEP{I|L}{I|L};[{I|L}P][SG]{I|L}{M(Oxidation (M))|F}QH{I|L}{I|L};[EP]{I|L}K{M(Oxidation (M))|F}QH{I|L}{I|L};[{I|L}P]T[VG]{M(Oxidation (M))|F}QH{I|L}{I|L};{I|L}P{M(Oxidation (M))|F}{I|L}GSQH{I|L}{I|L};[{I|L}P]TRWE{I|L}P{I|L};[EP]{I|L}K{M(Oxidation (M))|F}[AG]H{I|L}{I|L} 8.252;8.0706;7.4325;6.899;6.492;6.4732;6.2241;6.1164;5.7184;5.6537 +;+;-;-;-;-;-;-;-;- + 2123 NaN NaN 233810.5 NaN 6629 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9231 46.851 NaN 299140 35 0 46968 0.261 + 14354 LEAMESHGSIK 11 60 601.2976322298363 1200.5807115264724 2 601.7794799804688 MULTI HCD FTMS 0 0 0 9228 25715.28515625 0.3123707809315787 14 -0.35506439208984375 3 Unmodified _LEAMESHGSIK_ REV__CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;REV__ENSG00000080200|ENST00000389622|CRYBG3 8.155526934196011 0.3831532958467648 2 {NN|[MP]|[D{I|L}]|[EV]}PD{[C(Carbamidomethyl (C))G]|[NC]}ANVE 10 -1 39.385 0 0 3.2805 0 0 0 127.11010596994505 127.11010596994505 21.42667503568731 0 0 0 0 0.5 0 0.4247425010840047 0.7742275032520141 {NN|[MP]|[D{I|L}]|[EV]}PD{[C(Carbamidomethyl (C))G]|[NC]}ANVE 3.2805 - 600 NaN NaN 132495.3 NaN 6630 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9232 46.854 NaN 112260 35 0 7199.5 0.261 + 32233 VYTQHQPFL 9 47 566.7930800134149 1131.5716070936296 2 566.7928466796875 MULTI HCD FTMS 0 0 0 9228 47392.6015625 0.41134149915449997 6 -0.15462493896484375 4 Unmodified _VYTQHQPFL_ ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45 24.020572477871973 0.15282392193088168 2 [YV]{I|L} 3 6 39.265 0 0 3.4699 0 0 0 753.3328951471311 753.3328951471311 31.817496819840656 0 0 0 0 0.8807196863200843 2 0 0 [YV]{I|L} 3.4699 - 64 + NaN NaN 102198.5 NaN 6631 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9233 46.857 NaN 143240 35 0 12059 0.262 -1 ADKMDMSL 8 51 492.70411491427404 983.3936768953481 2 492.70465087890625 MULTI HCD FTMS 0 0 0 9228 64880.63671875 0.7993078560689424 -3 0.0802001953125 5 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 13.90604991867851 0.4914777452512057 2 S{I|L} 2 -1 29.024 0 0 2.9514 0 0 765.2676598276543 0 765.2676598276543 0 3.071924534588426 0 0 0 0.5 0 0.3054621874040891 0 S{I|L} 2.9514 + + 61 NaN NaN 104034.5 NaN 6632 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9234 46.861 NaN 159880 35 0 20737 0.261 + 24857 RYQDAIRVF 9 63 584.3169187810191 1166.6192846288382 2 584.31640625 MULTI HCD FTMS 0 0 0 9228 29366.029296875 0.2407693746443003 -4 0.0967559814453125 6 Unmodified _RYQDAIRVF_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 16.149105407346934 0.22083165093524068 2 YQ{M(Oxidation (M))|F}[K{I|L}]E 6 6 17.625 0 0 1.5107 0 0 340.22093398261876 0 340.22093398261876 0 5.661837734644596 0 0 0 0 0 0 0 YQ{M(Oxidation (M))|F}[K{I|L}]E 1.5107 - 49 NaN NaN 109473.5 NaN 6633 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9235 46.864 NaN 136540 35 0 8930.6 0.261 -1 SCVPGDTVTI 10 60 524.7525927519562 1047.4906325707123 2 524.79638671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _SC(Carbamidomethyl (C))VPGDTVTI_ ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8 5.731851221503515 0.44496410492002586 2 T{I|L} 2 -1 22.959 0 0 2.1918 0 0 815.3485896904666 0 815.3485896904666 0 13.025012804190577 0 0 0 0.5 0 0 0 T{I|L} 2.1918 + + 36 NaN NaN 100044.7 NaN 6634 2599 9228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9237 46.869 NaN 1259700 35 0 105130 0.327 + 1356 AYPHNLMTF 9 85 555.2577148688594 1108.5008768045186 2 555.2581176757812 MULTI HCD FTMS 0 0 0 9236 677753.25 0.46336249147329933 6 -0.16227340698242188 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 166.44778350782605 5.759113011535275E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 106.17 0 0 9.578 9.578 96.04 0 0 0 27.649291341558552 63.86230762800891 27.649291341558552 15.075156255085389 0 2.809894379144197 2 0.7134679910804405 0.5866968715561641 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]MAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TAY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}YAT{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T{I|L}NHPS{M(Oxidation (M))|F};[YT]M{I|L}NHPS{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T{[NV]|[RG]}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9.578;8.2181;6.3983;6.112;5.422;5.2004;4.4523;4.2507;4.1984;3.6046 +;-;-;-;-;-;-;-;-;- + 2492 NaN NaN 283635.5 NaN 6635 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9238 46.873 NaN 316030 35 0 62026 0.261 + 25045 SAAGKDWAF 9 58 476.729275188266 951.443997443332 2 476.7298278808594 MULTI HCD FTMS 0 0 0 9236 188394.9375 0.5160450955823579 -4 0.10707473754882812 2 Unmodified _SAAGKDWAF_ ENSG00000160256|ENST00000291634|SLX9;nc|ENSG00000160256|Q9NSI2-2|SLX9 33.4449034751529 0.0954363425218424 2 {[SA]|[TG]}AGKDWA{M(Oxidation (M))|F} 9 0 + 42.506 0 0 4.4676 4.4676 85.061 0 0 0 5.781731763146709 21.424129320110552 5.781731763146709 8.46787486224656 0 1.6677353201839438 1.154901959985743 0 0 + + {[SA]|[TG]}AGKDWA{M(Oxidation (M))|F};{[SA]|[TG]}QKDWA{M(Oxidation (M))|F};{[SA]|[TG]}[YT]{[HG]|PP}VA{M(Oxidation (M))|F};[QT]GKDWA{M(Oxidation (M))|F};M[YK][RH]A{M(Oxidation (M))|F};M[YK][HA]R{M(Oxidation (M))|F} 4.4676;3.5776;3.5111;2.4428;1.1237;0.17577 +;-;-;-;-;- + 256 NaN NaN 130702.6 NaN 6636 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9239 46.877 NaN 252660 35 0 59602 0.261 + 27553 TADGAHFEL 9 57 480.72462001348674 959.4346870937735 2 480.7247009277344 MULTI HCD FTMS 0 0 0 9236 158768.671875 0.6308140511210936 -3 0.08376312255859375 3 Unmodified _TADGAHFEL_ ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF 71.92227651296345 0.008466197542043549 2 [TA]DQH{M(Oxidation (M))|F}E{I|L} 8 2 + 69.104 0 0 7.2026 7.2026 92.966 0 0 0 5.197953115119063 55.19077524932108 5.197953115119063 15.894396170858727 0 1.6435078169319297 1.6989700043360187 0.805462187404089 0 [TA]DQH{M(Oxidation (M))|F}E{I|L};TADGAS{[RE]|[WV]}[PG];TADQS{[RE]|[WV]}[PG];TWQS{I|L}GD[PG];TWGAS{[VA]|[{I|L}G]}D[PG] 7.2026;5.5459;5.3624;3.9233;3.821 -;-;-;-;- 139 NaN NaN 122326.8 NaN 6637 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9240 46.881 NaN 191470 35 0 39400 0.261 + 19331 NNYKERLF 8 46 542.2829325268546 1082.551312120509 2 542.282958984375 MULTI HCD FTMS 0 0 0 9236 79570.4765625 0.4668860010216921 3 -0.07353591918945312 4 Unmodified _NNYKERLF_ ENSG00000102010|ENST00000348343|BMX 16.942295170755138 0.46913822049235215 2 WV{I|L}{M(Oxidation (M))|F} 4 6 39.68 0 0 3.6655 0 0 519.2533436505875 0 519.2533436505875 0 38.7113751626007 0 0 0 0.9247425010840047 0 0 0 WV{I|L}{M(Oxidation (M))|F} 3.6655 - 12 NaN NaN 115680.7 NaN 6638 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9241 46.884 NaN 254920 35 0 44040 0.261 + 25479 SFDSGSVRL 9 56 484.24592435200117 966.4772957708024 2 484.2459411621094 MULTI HCD FTMS 0 0 0 9236 103415.0859375 0.9458193156442983 -3 0.08376312255859375 5 Unmodified _SFDSGSVRL_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 49.55428908609986 0.03219431099695407 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DS[SG]VR{I|L} 9 0 + 60.436 0 0 6.2532 6.2532 92.932 0 0 0 44.95113412721771 5.7429465876939645 5.7429465876939645 34.51544993495972 0 1.6989700043360187 2 0.4247425010840047 0.3054621874040891 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DS[SG]VR{I|L};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}S[SG]VR{I|L} 6.2532;2.6819 +;- + 74 + NaN NaN 121997 NaN 6639 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9242 46.887 NaN 100920 35 0 11245 0.261 + 29841 VETDHTPIL 9 31 512.7688131755589 1023.5230734179178 2 513.2704467773438 MULTI HCD FTMS 0 0 0 9236 14258.4326171875 0.03979075844122591 19 -0.4941139221191406 6 Unmodified _VETDHTPIL_ REV__ENSG00000166963|ENST00000300231|MAP1A;REV__nc|ENSG00000166963|P78559-2|MAP1A 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 25.969 0 0 2.5372 0 0 779.3439198224625 0 779.3439198224625 0 15.511525224473813 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.5372 + + 6 NaN NaN 100862.2 NaN 6640 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9243 46.891 NaN 63723 35 0 15998 0.261 -1 0 39 579.2930601626516 578.2857836960516 1 579.2933959960938 MULTI HCD FTMS 0 0 0 9236 29824.076171875 0.7685217908424982 9 -0.23880386352539062 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 102281.8 NaN 6641 2600 9236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9245 46.896 NaN 67253 35 0 10775 0.327 -1 IYADNQVMHF 10 36 627.2847225990082 1252.5548922648163 2 627.2852172851562 MULTI HCD FTMS 0 0 0 9244 34120.21875 0.995856628539258 -3 0.08028793334960938 1 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 21.536976647645854 0.3096624038397699 2 {I|L}YADW 5 -1 56.999 0 0 4.5506 0 0 0 601.2515963190061 601.2515963190061 51.514711693449385 0 0 0 0 0.4247425010840047 2 0 0 {I|L}YADW 4.5506 - 18 + NaN NaN 107506.9 NaN 6642 2601 9244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9246 46.9 NaN 134890 35 0 13161 0.261 -1 CFEMKVTEK 9 48 565.7671056458981 NaN 0 565.7666015625 PEAK HCD FTMS 0 0 0 9244 14238.3505859375 0.5685656850052255 1 -0.013408660888671875 2 Oxidation (M) _CFEM(Oxidation (M))KVTEK_ ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU 3.5964929083625545 0.27781873954207675 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.35231 0 0 379.11598511816493 600.3458956354124 979.4618807535774 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.35231 + + 6 + NaN NaN 101675.3 NaN 6643 2601 9244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9247 46.904 NaN 107000 35 0 8326.3 0.261 + 18101 MPAETIKEL 9 39 516.2759412147207 1030.5373294962412 2 516.275390625 MULTI HCD FTMS 0 0 0 9244 31536.431640625 1 0 0 3 Unmodified _MPAETIKEL_ ENSG00000122870|ENST00000373886|BICC1;nc|ENSG00000122870|Q9H694-2|BICC1 5.296884461304476 0.3108627248283497 2 MP 2 7 20.969 0 0 2.0348 0 0 0 799.4255465143186 799.4255465143186 10.511525224473813 0 0 0 0 0 0 0 0 + MP 2.0348 + + 15 + NaN NaN 97104.5 NaN 6644 2601 9244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9249 46.909 NaN 1473200 35 0 285680 0.326 + 15251 LPAAGVGDMVM 11 88 546.756757525833 1091.498962118466 2 546.757080078125 MULTI HCD FTMS 0 0 0 9248 900531.3125 0.7618261895400799 -3 0.06695556640625 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 164.5152109175784 1.8457817257505332E-08 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 111.76 0 0 10.239 10.239 95.63 0 0 0 13.767507096021006 5.752574989159967 5.752574989159967 11.575773191777941 0 3.6989700043360187 1.154901959985743 0.805462187404089 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}GG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A[VG]{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10.239;9.1788;8.978;8.4276;8.0804;7.9175;7.2408;6.819;5.9794;5.4289 +;-;-;-;-;-;-;-;-;- + 1256 NaN NaN 313163.8 NaN 6645 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9250 46.914 NaN 551850 35 0 32587 0.262 + 34260 YPDRIMNTF 9 79 586.7737544853795 1171.532956037559 2 586.774169921875 MULTI HCD FTMS 0 0 0 9248 287287.46875 0.06395760775868786 18 -0.4872093200683594 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 132.13456570155267 0.00047552052208015726 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 87.607 0 0 7.478 7.478 87.592 0 0 0 2.3719145946597706 2.3719145946597706 2.3719145946597706 2.3719145946597706 0 2.9489700043360187 1.5228787452803376 1.475772496747986 0.9291746928241125 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 7.478;7.2755;6.4895;6.4738;6.4313;5.9392;5.6878;5.3834;5.207;5.1532 +;+;-;-;-;-;-;-;-;- + 2976 + NaN NaN 163116.9 NaN 6646 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9251 46.917 NaN 414620 35 0 31992 0.264 + 35435 YYEKLHTYF 9 68 421.8731201589613 1262.5975310770839 3 421.87310791015625 MULTI HCD FTMS 0 0 0 9248 107032.875 0.08614479691817077 -6 0.14715576171875 3 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 23.789781309258295 0.1548179064208189 2 YY 2 7 45.217 0 0 3.5812 0 0 0 933.4467875139197 933.4467875139197 22.385606273598313 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5812 + + 100 + NaN NaN 155687.4 NaN 6647 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9252 46.921 NaN 208620 35 0 24092 0.261 + 2285 DLPYEQARL 9 64 552.7873159449849 1103.5600789567698 2 552.7882080078125 MULTI HCD FTMS 0 0 0 9248 80599.1484375 0.7851534504596867 -1 0.013408660888671875 4 Unmodified _DLPYEQARL_ ENST00000216407.4_1_12:68867655-68868498:+|nuORF 29.081581746732265 0.1154664336125038 2 [DP]{I|L}YREQA{I|L} 9 4 + 63.166 0 0 5.7238 5.7238 88.133 0 0 0 9.449689600073441 56.17599686953518 9.449689600073441 9.208187539523749 0 1.9247425010840047 0 0.3807196863200844 0.4247425010840047 [DP]{I|L}YREQA{I|L};[DP]{I|L}YRE[AG]A{I|L} 5.7238;4.8894 -;- 169 NaN NaN 116481.3 NaN 6648 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9253 46.924 NaN 326740 35 0 33437 0.261 + 1590 AYVKGGLSTF 10 76 521.781850436197 1041.549147939194 2 521.7818603515625 MULTI HCD FTMS 0 0 0 9248 68255.6796875 0.9503243408108586 1 -0.03345489501953125 5 Unmodified _AYVKGGLSTF_ ENSG00000112685|ENST00000230449|EXOC2 45.739877483867886 0.09559676962230333 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VKN{I|L}ST{M(Oxidation (M))|F} 9 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} + + 38.197 20.713 8.8481 3.6673 3.6673 60.607 0 0 0 0 30.238051753245827 0 0 0 2.3979400086720375 0 0 0.3494850021680094 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VKN{I|L}ST{M(Oxidation (M))|F} 3.6673 - 197 + NaN NaN 130592.1 NaN 6649 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9254 46.928 NaN 362700 35 0 72620 0.261 + 23545 RPAQVEPLL 9 52 511.80317277438303 1021.5917926155661 2 511.8032531738281 MULTI HCD FTMS 0 0 0 9248 86261.9453125 0.19140776168873155 -4 0.09369659423828125 6 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 29.84058131909904 0.11198220037953927 2 [RP][QA]VEP{I|L}{I|L} 9 0 + 53.478 0 0 5.2348 5.2348 91.964 0 0 0 0.2853716820872165 40.19015715852716 0.2853716820872165 53.47804375441612 0 1.7614393726401687 0 0 0 + + [RP][QA]VEP{I|L}{I|L} 5.2348 + + 51 NaN NaN 134142.3 NaN 6650 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9255 46.931 NaN 140040 35 0 13632 0.261 + 33438 YGSRLDYFQ 9 48 574.772307175446 1147.530061417692 2 574.7728881835938 MULTI HCD FTMS 0 0 0 9248 27839.03125 0.2947576522593645 18 -0.4872093200683594 7 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 6.2057823575117 0.30397260197431997 2 S{[DS]|[MA]|[CV]|TT} 3 7 15.458 0 0 1.347 0 0 840.4104949917487 0 840.4104949917487 0 4.655593552960939 0 0 0 0.5 0 0 0 S{[DS]|[MA]|[CV]|TT} 1.347 - 9 NaN NaN 107371.7 NaN 6651 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9256 46.934 NaN 219930 35 0 18285 0.262 -1 MPANGETVTL 10 56 524.7525927519562 1047.4906325707123 2 524.7529907226562 MULTI HCD FTMS 0 0 0 9248 26181.337890625 0.33099968245392497 -6 0.14715576171875 8 Oxidation (M) _M(Oxidation (M))PANGETVTL_ ENSG00000127054|ENST00000435064|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000497304.6_1_1:1247871-1248066:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 13.614867670302875 0.3837631382804675 2 TVT{I|L} 4 -1 32.044 0 0 3.0591 0 0 615.2306385724625 0 615.2306385724625 0 19.367880254518738 0 0 0 0.7887254899964358 0 0 0 TVT{I|L} 3.0591 + + 36 NaN NaN 117525.8 NaN 6652 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9257 46.938 NaN 62905 35 0 5807.9 0.261 + 1432 AYQRLREERLQ 11 49 487.93564129713593 NaN 0 487.93560791015625 PEAK HCD FTMS 0 0 0 9248 17300.333984375 0.7156354802144861 -10 0.24299240112304688 9 Unmodified _AYQRLREERLQ_ REV__ENSG00000104529|ENST00000618139|EEF1D;REV__ENST00000526786.5_1_8:144662606-144679251:-|nuORF;REV__nc|ENSG00000104529|P29692-3|EEF1D;REV__nc|ENSG00000104529|P29692-4|EEF1D;REV__nc|ENSG00000104529|P29692|EEF1D 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92495.9 NaN 6653 2602 9248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9259 46.943 NaN 236630 35 0 20098 0.327 + 28036 TGAFQQADF 9 63 492.72473815320257 983.4349233732052 2 492.72479248046875 MULTI HCD FTMS 0 0 0 9258 102187.1640625 0.9903418636523428 -2 0.046863555908203125 1 Unmodified _TGAFQQADF_ REV__ENSG00000176919|ENST00000371634|C8G 36.12702656103203 0.08312389501731911 2 {[SA]|[TG]}AGKD{[MS]|[{M(Oxidation (M))|F}A]}AT 10 -1 39.649 0 0 4.0317 0 0 0 61.02469847834576 61.02469847834576 28.802901104461423 0 0 0 0 1.7614393726401687 1.2218487496163564 0.6505149978319906 0 {[SA]|[TG]}AGKD{[MS]|[{M(Oxidation (M))|F}A]}AT 4.0317 - 171 NaN NaN 115784.5 NaN 6654 2603 9258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9260 46.947 NaN 147010 35 0 38738 0.261 + 24036 RWPKKSAEFLL 11 42 458.9344726591946 1373.7815885777839 3 458.9345703125 MULTI HCD FTMS 0 0 0 9258 45017.2734375 0.2434222632727022 -13 0.3088836669921875 2 Unmodified _RWPKKSAEFLL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 3.8459078486920597 0.402053821155582 2 {I|L}{I|L} 2 9 25.969 0 0 1.8903 0 0 1129.6023620081412 0 1129.6023620081412 0 12.474250108400469 0 0 0 0.5 0 0 0 + {I|L}{I|L} 1.8903 + + 10 NaN NaN 109642.9 NaN 6655 2603 9258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9261 46.951 NaN 229850 35 0 32183 0.261 + 35885 YYSEADASHC 10 56 573.2127708723431 1144.410988811486 2 573.2119750976562 MULTI HCD FTMS 0 0 0 9258 48350.453125 0.9395106857181156 -3 0.07353591918945312 3 Unmodified _YYSEADASHC_ ENSG00000058404|ENST00000395749|CAMK2B;ENSG00000070808|ENST00000671881|CAMK2A;ENSG00000145349|ENST00000511664|CAMK2D;ENSG00000148660|ENST00000423381|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G 1.844237919475145 0.46554186016084764 2 YY[KT][VP]Q 7 8 18.529 0 0 1.6191 0 0 0 261.9370867941611 261.9370867941611 10.57029106831088 0 0 0 0 0 2 0.3054621874040891 0 YY[KT][VP]Q 1.6191 - 47 NaN NaN 126310.8 NaN 6656 2603 9258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9262 46.954 NaN 56977 35 0 7511.4 0.261 + 30667 VPDTESETRIL 11 38 630.3276355886181 1258.6407182440362 2 630.3295288085938 MULTI HCD FTMS 0 0 0 9258 30251.1796875 0.7091493177267962 -6 0.15729904174804688 4 Unmodified _VPDTESETRIL_ ENSG00000125730|ENST00000245907|C3 10.315234532428624 0.3672054350828177 2 {I|L}{I|L} 2 9 17.959 0 0 1.4268 0 0 1014.4593580511141 0 1014.4593580511141 0 7.161903266879719 0 0 0 0 0 0 0 + {I|L}{I|L} 1.4268 + + 4 NaN NaN 101640.9 NaN 6657 2603 9258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9264 46.96 NaN 2688200 35 0 328370 0.327 + 561 APEEHPVLL 9 107 502.77415335255756 1003.5337537719151 2 502.7743835449219 MULTI HCD FTMS 0 0 0 9263 1551135.25 0.01660899159167895 30 -0.7572479248046875 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 117.59872219059416 0.0017018906413822257 2 APEEHPV{I|L}{I|L} 9 0 + 70.957 0 0 7.0707 7.0707 88.169 0 0 0 5.881681563112394 5.881681563112394 5.881681563112394 5.881681563112394 0 2.341129063296272 1.154901959985743 0.9163865622122673 0 + + APEEHPV{I|L}{I|L};[PA]EEHPV{I|L}{I|L};[VP]HDDPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[PA]EEH{I|L}VP{I|L};[VP]HEEPA{I|L}{I|L};[EP]AEHPV{I|L}{I|L};{[YC]|[HE]}E[VP]PA{I|L}{I|L};[EP]EAHPV{I|L}{I|L};[VP]{I|L}{[YC]|[HE]}EPA{I|L} 7.0707;6.4846;5.5377;5.2556;4.8868;4.84;4.7645;4.5578;4.4162;4.1716 +;+;-;-;-;-;-;-;-;- + 1505 + NaN NaN 499309.5 NaN 6658 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9265 46.964 NaN 734050 35 0 84200 0.261 + 32329 VYVERAEVL 9 83 539.3006290958108 1076.5867052584215 2 539.30078125 MULTI HCD FTMS 0 0 0 9263 379353.4375 0.5660194281591927 4 -0.12522506713867188 2 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 63.227496030279354 0.01306643085373406 2 [YV]VERAEV{I|L} 9 0 + 85.372 0 0 7.9299 7.9299 89.787 0 0 0 15.017594954609322 53.95750937337162 15.017594954609322 6.020599913279625 0 2.1549471895720984 1.6989700043360187 0 0 + + [YV]VERAEV{I|L};[YV]VERAE{I|L}V;[YV]VERA{I|L}D{I|L};[YV]VERA{I|L}EV;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][VG]AEV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][VG]AE{I|L}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][VG]A{I|L}D{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][VG]A{I|L}EV 7.9299;7.3706;6.7374;6.1782;3.5876;3.0283;2.3951;1.8359 +;-;-;-;-;-;-;- + 530 NaN NaN 195328.4 NaN 6659 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9266 46.968 NaN 275330 35 0 78418 0.261 + -1 FMEWCYLL 8 49 589.2559079708881 1176.497263008576 2 589.2564086914062 MULTI HCD FTMS 0 0 0 9263 117090.296875 0.6241549422468908 4 -0.12522506713867188 3 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))EWC(Carbamidomethyl (C))YLL_ REV__ENST00000578529.5_1_18:259269-260310:-|nuORF;REV__ENST00000581116.1_1_18:259269-264031:-|nuORF 14.581692164780916 0.48650662947107914 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 46.855 0 0 3.9826 0 0 656.2408924787125 0 656.2408924787125 0 41.37009080640347 0 0 0 0.9247425010840047 0 0.805462187404089 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.9826 - 34 NaN NaN 132026.1 NaN 6660 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9267 46.972 NaN 238600 35 0 48398 0.261 + 4953 FASLPQVER 9 52 523.7852443780954 1045.5559358229907 2 523.7852783203125 MULTI HCD FTMS 0 0 0 9263 91380.2109375 1 0 0 4 Unmodified _FASLPQVER_ ENSG00000071127|ENST00000499869|WDR1;ENST00000509600.1_1_4:10117520-10118290:-|nuORF;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 39.94969957227396 0.06557568441294001 2 {[WT]|[RM]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S{[CP]|[EA]} 9 7 + 38.618 0 0 3.6936 3.6936 81.935 0 0 0 0.43059974617322183 24.63878728569697 0.43059974617322183 3.0102999566398125 0 1.4247425010840047 0 0.4247425010840047 0 {[WT]|[RM]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}S{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}P{[RE]|[WV]} 3.6936;3.4056 -;- 61 NaN NaN 137516.1 NaN 6661 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9268 46.975 NaN 159260 35 0 24253 0.261 + 2294 DLSHPQVF 8 50 471.7377448716558 941.4609368101117 2 471.73809814453125 MULTI HCD FTMS 0 0 0 9263 38768.375 0.21034284384037594 7 -0.1879730224609375 5 Unmodified _DLSHPQVF_ REV__ENSG00000162641|ENST00000370001|AKNAD1;REV__ENST00000461774.5_1_1:109365950-109373230:-|nuORF;REV__nc|ENSG00000162641|Q5T1N1-3|AKNAD1;REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1 11.640296217721598 0.50814828952472 2 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 3.2895 0 0 677.3140995071805 0 677.3140995071805 0 26.365006360318688 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 3.2895 + + 28 + NaN NaN 119938.9 NaN 6662 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9269 46.978 NaN 187960 35 0 23609 0.261 + 20588 PEKFQHIL 8 73 506.2845102195153 1010.5544675058306 2 506.28448486328125 MULTI HCD FTMS 0 0 0 9263 36789.6953125 0.39932430639052907 4 -0.12522506713867188 6 Unmodified _PEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 30.636539890814138 0.35121444018244025 2 [EP][TP][WR]{I|L}{I|L} 8 4 + 44.71 0 0 4.4243 4.4243 84.834 0 0 0 8.032438866630343 8.032438866630343 8.032438866630343 8.032438866630343 0 0.805462187404089 1.6989700043360187 0 0 [EP][TP][WR]{I|L}{I|L};[EP]KQ{M(Oxidation (M))|F}H{I|L}{I|L};[EP]KK{[WN]|[YH]}P{I|L};[EP]KKPHY{I|L};[TP][EP][WR]{I|L}{I|L};[TP]{[QG]|[NA]}[{M(Oxidation (M))|F}V]H{I|L}{I|L};[EP][{I|L}P][WR]T{I|L} 4.4243;3.6295;2.7361;2.2437;2.0249;1.7552;1.2705 -;-;-;-;-;-;- 110 NaN NaN 105946.1 NaN 6663 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9270 46.982 NaN 41840 35 0 6298.4 0.262 + 20555 PEEEIWEELSV 11 27 453.88123817792405 1358.6218851339722 3 453.87957763671875 MULTI HCD FTMS 0 0 0 9263 11913.9990234375 0.5000053279540124 2 -0.07184982299804688 7 Unmodified _PEEEIWEELSV_ ENSG00000198681|ENST00000356661|MAGEA1 1.214830529360525 0.41359283248740725 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87446 NaN 6664 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9271 46.985 NaN 88790 35 0 7866.5 0.261 + 34214 YPDPYGGEKL 10 47 569.7743929237647 1137.5342329143293 2 569.7747802734375 MULTI HCD FTMS 0 0 0 9263 4717.318359375 0.0056808207002084325 -13 0.30652618408203125 8 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 7.101721422024254 0.4377131641736035 2 YPD 3 7 22.664 0 0 1.9924 0 0 0 759.3667762812223 759.3667762812223 6.465912507003605 0 0 0 0 0.4247425010840047 0 0 0 + YPD 1.9924 + + 27 + NaN NaN 106189.7 NaN 6665 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9272 46.988 NaN 88407 35 0 12220 0.261 + 32740 WQQPHHAL 8 46 508.75728507175234 1015.5000172103047 2 508.7201232910156 MULTI HCD FTMS 0 0 0 9263 24318.2734375 1 0 0 9 Unmodified _WQQPHHAL_ REV__ENST00000492950.5_3_1:161130443-161130752:+|nuORF 5.230669730166228 0.5342319408533849 2 E{I|L} 2 -1 17.959 0 0 1.7685 0 0 755.3641816000542 0 755.3641816000542 0 2.4742501084004687 0 0 0 0 0 0 0 E{I|L} 1.7685 - 11 NaN NaN 116393.2 NaN 6666 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9273 46.992 NaN 45361 35 0 4288.5 0.261 + 23765 RRKKKKKKK 9 38 614.4455806549669 NaN 0 614.3419799804688 PEAK HCD FTMS 0 0 0 9263 5815.81689453125 0.4011926315891587 -1 0.016887664794921875 10 Unmodified _RRKKKKKKK_ REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF 0 0.29524684227089293 2 {I|L} 1 -1 3.0989 0 0 0.25259 0 0 739.4557537398181 371.32575403385005 1110.7815077736682 0 0 0 0 0 0 0 0 0 {I|L} 0.25259 - 2 + NaN NaN 92312.9 NaN 6667 2604 9263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9275 46.997 NaN 341520 35 0 66072 0.327 + 10505 IPEKFQHIL 9 51 562.8266960944915 1123.6388392557828 2 562.826904296875 MULTI HCD FTMS 0 0 0 9274 145572.265625 0.34341904914543936 5 -0.13083267211914062 1 Unmodified _IPEKFQHIL_ ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF 45.739877483867886 0.03899552410870734 2 {I|L}PEKK{M(Oxidation (M))|F}H 7 4 56.975 0 0 5.0706 0 0 0 241.15540491275627 241.15540491275627 34.23979484917851 0 0 0 0 1.6549471895720984 0 0.5 0 {I|L}PEKK{M(Oxidation (M))|F}H 5.0706 - 98 + NaN NaN 148706.4 NaN 6668 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9276 47.001 NaN 847590 35 0 59638 0.261 + 8332 GYFGNPQKF 9 93 529.25866547298 1056.50277801276 2 529.259033203125 MULTI HCD FTMS 0 0 0 9274 339343.90625 0.6301300682099962 -3 0.08766937255859375 2 Unmodified _GYFGNPQKF_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3 85.35673624503755 0.00464763827098139 2 [YG]{M(Oxidation (M))|F}GN[QP]K{M(Oxidation (M))|F} 9 0 + 76.621 0 0 7.2524 7.2524 90.749 0 0 0 21.751736484954378 62.01721569349729 21.751736484954378 9.208187539523749 0 2.4247425010840047 1.6989700043360187 0 0.7302046884880937 + + [YG]{M(Oxidation (M))|F}GN[QP]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGG[QP]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GN[QP]{M(Oxidation (M))|F}K;[YG]{M(Oxidation (M))|F}GK{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGG[QP]{M(Oxidation (M))|F}K;[YG]{[QN]|[E{I|L}]|[KN]}[WD]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GK{[QD]|[EN]|[WG]|[KD]|[RS]}DK;[YG]{M(Oxidation (M))|F}GK{[QD]|[EN]|[WG]|[KD]|[RS]}TAA;[YG]{[QN]|[E{I|L}]|[KN]}{[VA]|[{I|L}G]}G[WY];[YG]{[QN]|[E{I|L}]|[KN]}[WD]{M(Oxidation (M))|F}K 7.2524;6.3808;5.4626;5.1123;4.591;4.3289;3.6075;2.9217;2.6645;2.5392 +;-;-;-;-;-;-;-;-;- + 649 NaN NaN 211872.4 NaN 6669 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9277 47.006 NaN 295640 35 0 51372 0.261 + 16437 LSMTHEDQKL 10 59 601.2976322298363 1200.5807115264724 2 601.7793579101562 MULTI HCD FTMS 0 0 0 9274 27481.982421875 0.3338313481070836 20 -0.5084953308105469 3 Unmodified _LSMTHEDQKL_ ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 8.745405648335112 0.42901288225909884 2 [VP]ED{[C(Carbamidomethyl (C))G]|[NC]}ANVE 10 10 48.619 0 0 4.0497 0 0 0 127.10943518220905 127.10943518220905 33.92667503568731 0 0 0 0 0.5 0 0.4247425010840047 1.1747425010840047 [VP]ED{[C(Carbamidomethyl (C))G]|[NC]}ANVE 4.0497 - 538 NaN NaN 143734.8 NaN 6670 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9278 47.009 NaN 246230 35 0 32438 0.261 + 20938 PLAQEEDSEP 10 50 557.7477242342312 1113.4808955352623 2 557.7478637695312 MULTI HCD FTMS 0 0 0 9274 129964 0.9344800812413963 1 -0.03452301025390625 4 Unmodified _PLAQEEDSEP_ ENST00000448979.3_1_12:53900562-53901037:-|nuORF;nc|ENSG00000139574|O15130-2|NPFF 17.11289562659939 0.35104376501799556 2 {I|L}PAAGV 6 9 81.943 0 0 7.3592 0 0 0 602.1567944179519 602.1567944179519 60.7723722827955 0 0 0 0 2.079689690656103 2 0 0 {I|L}PAAGV 7.3592 - 201 + NaN NaN 120474.6 NaN 6671 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9279 47.013 NaN 327530 35 0 28711 0.261 + 35443 YYEKLHTYF 9 54 632.306050858589 1262.5975487839778 2 632.3064575195312 MULTI HCD FTMS 0 0 0 9274 142466.28125 0.609286127875457 -2 0.0542144775390625 5 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 96.0343551737317 0.004367843638107011 2 YYEK{I|L}HTY{M(Oxidation (M))|F} 9 0 + 106.21 0 0 8.4119 8.4119 94.098 0 0 0 4.230078252872502 4.230078252872502 4.230078252872502 12.028937514676485 0 2.5356668758921828 2 0.7742275032520141 0.8494850021680094 + + YYEK{I|L}HTY{M(Oxidation (M))|F};YYEK{I|L}HT{M(Oxidation (M))|F}Y;[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[TA]TY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[TA]T{M(Oxidation (M))|F}Y;[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}KEYY;[NP]D{M(Oxidation (M))|F}K{I|L}GYY{M(Oxidation (M))|F} 8.4119;7.4592;4.429;3.4763;2.9938;2.2216 +;-;-;-;-;- + 331 NaN NaN 145035.4 NaN 6672 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9280 47.016 NaN 234610 35 0 21454 0.262 + 6684 FPNKQGYVL 9 64 533.289789047833 1064.5650251624659 2 533.2900390625 MULTI HCD FTMS 0 0 0 9274 109033.9453125 0.11869075899112151 -21 0.4322013854980469 6 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 61.357469665136826 0.01568246967499496 2 {M(Oxidation (M))|F}QGYV{I|L} 6 3 51.133 0 0 4.8032 0 0 339.19127089668126 0 339.19127089668126 0 24.45046257204389 0 0 0 0.5 0 0 0.6747425010840047 {M(Oxidation (M))|F}QGYV{I|L} 4.8032 - 91 NaN NaN 117522.4 NaN 6673 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9281 47.019 NaN 219730 35 0 25512 0.261 + 8663 HFIAEHYMF 9 69 605.7708189559607 1209.5270849787214 2 605.7708129882812 MULTI HCD FTMS 0 0 0 9274 73539.109375 0.5334759486548571 -3 0.08766937255859375 7 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 85.35673624503755 0.00464763827098139 2 {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 73.483 0 0 6.0754 6.0754 85.46 0 0 0 3.295671638727029 3.295671638727029 3.295671638727029 3.295671638727029 0 2.6677353201839438 1.6989700043360187 0.3494850021680094 0 + + {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}AYYY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 6.0754;5.8029;2.9503 +;+;- + 120 NaN NaN 115894.1 NaN 6674 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9282 47.023 NaN 313970 35 0 18768 0.261 -1 AYIERMNYI 9 61 594.7896777494806 1187.564802565761 2 594.7900390625 MULTI HCD FTMS 0 0 0 9274 34290.2109375 0.07814158717286049 29 -0.7199211120605469 8 Oxidation (M) _AYIERM(Oxidation (M))NYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 36.12702656103203 0.08312389501731911 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}C{I|L} 10 -1 + 39.159 0 0 3.2974 3.2974 89.141 0 0 0 1.0873530347330274 27.922196612541228 1.0873530347330274 39.15932166674146 0 0 2 0 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}C{I|L} 3.2974 - 25 NaN NaN 130669.1 NaN 6675 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9283 47.026 NaN 154550 35 0 12497 0.261 + 34649 YPSEQEKLSL 10 48 597.3060057204249 1192.5974585076497 2 597.3050537109375 MULTI HCD FTMS 0 0 0 9274 90026.0390625 0.6267646725759137 -3 0.08766937255859375 9 Unmodified _YPSEQEKLSL_ ENSG00000118707|ENST00000373872|TGIF2;nc|ENSG00000118707|Q9GZN2-2|TGIF2 59.05245873256422 0.044867740978679724 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L} 10 0 + 63.35 0 0 5.3119 5.3119 91.641 0 0 0 11.094530900531012 34.109915303255605 11.094530900531012 39.57316032348369 0 1.5924778212679485 1.5228787452803376 0.7302046884880937 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L}S{I|L};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DA]|[EG]}A{M(Oxidation (M))|F}{I|L}S{I|L} 5.3119;1.9937 +;- + 90 NaN NaN 115129.2 NaN 6676 2605 9274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9285 47.032 NaN 304580 35 0 56544 0.327 + 25046 SAAGKDWAF 9 64 476.729275188266 951.443997443332 2 476.729736328125 MULTI HCD FTMS 0 0 0 9284 173108.390625 0.4741726989674883 2 -0.053375244140625 1 Unmodified _SAAGKDWAF_ ENSG00000160256|ENST00000291634|SLX9;nc|ENSG00000160256|Q9NSI2-2|SLX9 38.61474834105838 0.07170385841135779 2 {[SA]|[TG]}AGK{[DS]|[MA]|[CV]|TT}VA 9 3 50.837 0 0 5.3431 0 0 0 162.02301965885002 162.02301965885002 24.867574738500338 0 0 0 0 2.1989700043360187 1.2218487496163564 0 0 {[SA]|[TG]}AGK{[DS]|[MA]|[CV]|TT}VA 5.3431 - 380 + NaN NaN 135821.3 NaN 6677 2606 9284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9286 47.036 NaN 408650 35 0 24745 0.261 + 1357 AYPHNLMTF 9 71 555.2577148688594 1108.5008768045186 2 555.2578125 MULTI HCD FTMS 0 0 0 9284 169046.90625 0.11557302846700221 12 -0.3052787780761719 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 92.4914307365334 0.004460681868130716 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 75.903 0 0 6.8473 6.8473 91.472 0 0 0 24.762036441594184 47.978736744405055 24.762036441594184 12.095442439488096 0 1.9436726795685342 2 0.4247425010840047 0.28872548999643577 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[WK]P[PS]N 6.8473;5.7562;4.3493;4.0682;3.9042;3.8836;3.2943;3.1701 -;-;-;-;-;-;-;- 767 NaN NaN 143638.9 NaN 6678 2606 9284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9287 47.04 NaN 197430 35 0 49983 0.261 + 27554 TADGAHFEL 9 43 480.72462001348674 959.4346870937735 2 480.7243347167969 MULTI HCD FTMS 0 0 0 9284 154890.21875 0.6154043188422298 3 -0.07653045654296875 3 Unmodified _TADGAHFEL_ ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF 58.678817012210395 0.019429721296335044 2 TADQH 5 5 57.479 0 0 5.991 0 0 0 404.18320642642817 404.18320642642817 33.767959391884546 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 TADQH 5.991 - 47 + NaN NaN 122428 NaN 6679 2606 9284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9288 47.043 NaN 337020 35 0 98824 0.261 -1 ELGRLMFIAVF 11 68 437.9088836594934 1310.7048215786804 3 437.9090881347656 MULTI HCD FTMS 0 0 0 9284 111781.3828125 0.664196481972481 1 -0.023532867431640625 4 Oxidation (M) _ELGRLM(Oxidation (M))FIAVF_ ENST00000507419.5_1_5:133984013-133984100:-|nuORF 12.855947597645695 0.34506811884481176 2 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.3054 0 0 1046.5571284281928 0 1046.5571284281928 0 13.226825097560422 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.3054 + + 40 NaN NaN 147919.5 NaN 6680 2606 9284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9289 47.047 NaN 497420 35 0 32977 0.261 + 34729 YPVKYTQTF 9 80 573.7951504729718 1145.5757480127436 2 573.7950439453125 MULTI HCD FTMS 0 0 0 9284 202765.1875 0.9027137259528565 -1 0.03452301025390625 5 Unmodified _YPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 114.20165948288297 0.0022564706844261533 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYTQT{M(Oxidation (M))|F} 9 0 + 84.65 0 0 7.3893 7.3893 90.988 0 0 0 25.87128018967597 43.68108131561996 25.87128018967597 9.208187539523749 0 2.25 1.5228787452803376 0.7614393726401688 0.5484550065040282 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYTQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYT[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VKYT{[NV]|[RG]}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VK[HM][KP]{M(Oxidation (M))|F};Y[{I|L}T]{M(Oxidation (M))|F}[YV]V{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VK{[QS]|[NT]}[YV]Y;Y{[QV]|[N{I|L}]|[RA]|[KV]}[HM]KV{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]Q{[QV]|[N{I|L}]|[RA]|[KV]}[Y{I|L}]T{M(Oxidation (M))|F};[WP][DP]YKV{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]Q[KQ][PG]V{[QN]|[E{I|L}]|[KN]} 7.3893;6.5855;3.8652;3.8019;2.4339;2.4021;2.2877;1.7259;1.623;1.4761 +;-;-;-;-;-;-;-;-;- + 825 NaN NaN 173955.5 NaN 6681 2606 9284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9290 47.05 NaN 233970 35 0 22920 0.261 -1 MPDLENRVL 9 65 551.7818682466998 NaN 0 551.7822875976562 PEAK HCD FTMS 0 0 0 9284 73511.9140625 0.6216879488263545 -2 0.07184982299804688 6 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 37.07464296494664 0.08765712315935065 2 PD{I|L}E 4 -1 31.459 0 0 2.8559 0 0 147.03247321039322 497.28440271549067 644.3168759258839 0 0 0 0 0 1.4916440611282626 0 0 0 PD{I|L}E 2.8559 + + 28 + NaN NaN 128080.3 NaN 6682 2606 9284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9292 47.055 NaN 2469300 35 0 192030 0.327 + 35436 YYEKLHTYF 9 100 421.8731201589613 1262.5975310770839 3 421.87322998046875 MULTI HCD FTMS 0 0 0 9291 1211083.125 0.9747333223941582 -1 0.023532867431640625 1 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 51.487983226225225 0.029489205318603332 2 YYEK{I|L}HTY{M(Oxidation (M))|F} 9 0 + 76.877 0 0 6.0888 6.0888 93.851 0 0 0 51.53598431600422 13.824543621168388 13.824543621168388 76.87707207549607 0 1.579689690656103 2 0.4247425010840047 0 + + YYEK{I|L}HTY{M(Oxidation (M))|F} 6.0888 + + 581 + NaN NaN 468364.5 NaN 6683 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9293 47.059 NaN 1380200 35 0 268200 0.261 + 15252 LPAAGVGDMVM 11 85 546.756757525833 1091.498962118466 2 546.757080078125 MULTI HCD FTMS 0 0 0 9291 930471.3125 0.7871546548563039 2 -0.052997589111328125 2 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 180.00974506902125 6.669720871725447E-14 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 114.49 0 0 10.49 10.49 95.738 0 0 0 16.408654414343175 87.58201737346158 16.408654414343175 11.575773191777927 0 3.805462187404089 1.3979400086720375 1.1549471895720984 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}GG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A[VG]{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10.49;9.429;8.7717;8.6063;8.2212;7.7667;7.7111;6.8885;6.0488;5.4984 +;-;-;-;-;-;-;-;-;- + 1405 NaN NaN 294211.6 NaN 6684 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9294 47.063 NaN 400660 35 0 24172 0.261 + 34261 YPDRIMNTF 9 76 586.7737544853795 1171.532956037559 2 586.7742919921875 MULTI HCD FTMS 0 0 0 9291 171032.265625 0.03807619805527443 23 -0.5634422302246094 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 97.74103586103693 0.004323122048066454 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 78.836 0 0 6.7293 6.7293 87.646 0 0 0 6.06808051642615 6.06808051642615 6.06808051642615 6.06808051642615 0 2.6721675119240516 1.6989700043360187 1.1382104921644451 0.8882104921644451 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 6.7293;6.2113;5.6968;5.6936;5.4253;5.1902;5.1209;4.9076;4.4042;4.3562 +;+;-;-;-;-;-;-;-;- + 973 + NaN NaN 148638.9 NaN 6685 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9295 47.066 NaN 689210 35 0 103160 0.261 + 25378 SEFLKKSTF 9 95 543.7952169768952 1085.5758810205903 2 543.7830810546875 MULTI HCD FTMS 0 0 0 9291 12321.4560546875 0.4840595522143439 7 -0.17899322509765625 4 Unmodified _SEFLKKSTF_ ENSG00000006116|ENST00000005284|CACNG3 18.13498045792455 0.20367413111508956 2 NTV[{I|L}P]ST{M(Oxidation (M))|F} 8 5 47.032 0 0 4.3324 0 0 208.11069458773085 0 208.11069458773085 0 26.22994718840225 0 0 0 0 0 1.1906140654642812 0 NTV[{I|L}P]ST{M(Oxidation (M))|F} 4.3324 - 554 + NaN NaN 195316.7 NaN 6686 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9296 47.07 NaN 284620 35 0 26561 0.261 + 21714 QADIEVRAL 9 66 507.78248879895085 1013.5504246647017 2 507.7821960449219 MULTI HCD FTMS 0 0 0 9291 103095.6171875 0.8419214013360762 -1 0.023532867431640625 5 Unmodified _QADIEVRAL_ ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3 83.42873516780209 0.004742894019233849 2 [QA]D{I|L}E[KT]P 8 4 41.168 0 0 4.0618 0 0 0 128.0734595498408 128.0734595498408 25.328993106982963 0 0 0 0 2 0 1.5501648626366045 1.774227503252014 [QA]D{I|L}E[KT]P 4.0618 - 226 NaN NaN 126459.7 NaN 6687 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9297 47.073 NaN 102910 35 0 14075 0.261 + 24858 RYQDAIRVF 9 43 584.3169187810191 1166.6192846288382 2 584.3175659179688 MULTI HCD FTMS 0 0 0 9291 50046.1875 0.4103240906658314 4 -0.09259033203125 6 Unmodified _RYQDAIRVF_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 10.150570793230772 0.27265765907388223 2 RDQ{I|L} 4 6 15.918 0 0 1.3644 0 0 264.14788310202795 387.17783533267817 651.3257184347061 0 0 0 0 0 0 0 0 0 RDQ{I|L} 1.3644 - 26 + NaN NaN 92444.4 NaN 6688 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9298 47.076 NaN 84243 35 0 6193.9 0.261 + 19885 NYDKVEKLF 9 46 578.3058979915622 1154.5972430499244 2 578.3060302734375 MULTI HCD FTMS 0 0 0 9291 35432.05078125 0.8770698846570484 1 -0.029842376708984375 7 Unmodified _NYDKVEKLF_ ENSG00000176102|ENST00000323959|CSTF3 27.223235318498237 0.1251536255799991 2 [YN]DKVEK{I|L}{M(Oxidation (M))|F} 9 0 + 48.368 0 0 4.1891 4.1891 90.344 0 0 0 27.39840907618465 7.816658315635081 7.816658315635081 48.36750920626521 0 1.079689690656103 2 0 0 + + [YN]DKVEK{I|L}{M(Oxidation (M))|F} 4.1891 + + 29 + NaN NaN 92077.4 NaN 6689 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9299 47.08 NaN 135070 35 0 10726 0.262 + 1978 DAPLRDPAL 9 64 484.26413972823497 966.51372652327 2 484.2638854980469 MULTI HCD FTMS 0 0 0 9291 29093.787109375 0.7229590556039059 1 -0.029842376708984375 8 Unmodified _DAPLRDPAL_ ENSG00000030582|ENST00000053867|GRN;ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-2|GRN;nc|ENSG00000030582|P28799-3|GRN 16.149105407346934 0.22083165093524068 2 DPA{I|L} 4 5 37.18 0 0 3.8469 0 0 552.2997303693375 0 552.2997303693375 0 11.228677823148239 0 0 0 0.8252574989159953 0 0 0 + DPA{I|L} 3.8469 + + 79 NaN NaN 100840.4 NaN 6690 2607 9291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9301 47.085 NaN 665490 35 0 139480 0.327 + 23546 RPAQVEPLL 9 65 511.80317277438303 1021.5917926155661 2 511.80328369140625 MULTI HCD FTMS 0 0 0 9300 322715.125 0.716076822932467 2 -0.042934417724609375 1 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 40.23920728925047 0.06424668180817725 2 [RP]AQVEP{I|L}{I|L} 9 0 + 67.005 0 0 6.5589 6.5589 86.094 0 0 0 2.774786933902007 12.843181179205061 2.774786933902007 2.774786933902007 0 2.142159058960253 0 0 0 + + [RP]AQVEP{I|L}{I|L};[{I|L}P]{[QG]|[NA]}REP{I|L}{I|L};[RP]A[AG]VEP{I|L}{I|L};[RP]A{I|L}NEP{I|L}{I|L};[{I|L}P]D[QA]RP{I|L}{I|L};[{I|L}P]{[QG]|[NA]}ERP{I|L}{I|L};[RP]A{I|L}GGEP{I|L}{I|L};[RP]S[PS][VG]P{I|L}{I|L};[RP]A{[CP]|[EA]}[VG]P{I|L}{I|L};[EP]V[QA]RP{I|L}{I|L} 6.5589;6.2873;5.6575;5.502;5.1136;4.9706;4.6007;3.0168;2.7221;2.5165 +;-;-;-;-;-;-;-;-;- + 290 NaN NaN 186166.1 NaN 6691 2608 9300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9302 47.089 NaN 342080 35 0 86567 0.261 + 14485 LFAETFKRHLI 11 51 458.9344726591946 1373.7815885777839 3 459.268798828125 MULTI HCD FTMS 0 0 0 9300 60804.00390625 0.40782101345106603 -10 0.26926422119140625 2 Unmodified _LFAETFKRHLI_ ENST00000526600.1_1_11:12965683-12965947:+|nuORF 9.764250979337305 0.37200617284565546 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 30.005 0 0 2.1841 0 0 982.5341631034743 0 982.5341631034743 0 24.5205343810445 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.1841 - 16 NaN NaN 141067.6 NaN 6692 2608 9300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9303 47.093 NaN 179050 35 0 27256 0.261 -1 SCVPGDTVTI 10 53 524.7525927519562 1047.4906325707123 2 524.7528076171875 MULTI HCD FTMS 0 0 0 9300 79097.7734375 1 0 0 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))VPGDTVTI_ ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8 18.1463463914782 0.3413772152514074 2 T{I|L} 2 -1 25.969 0 0 2.4792 0 0 815.3476549075898 0 815.3476549075898 0 11.989700043360187 0 0 0 0.5 0 0 0 T{I|L} 2.4792 + + 18 NaN NaN 110634.2 NaN 6693 2608 9300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9304 47.096 NaN 184820 35 0 21730 0.261 + 2273 DLMRFRKPWPL 11 62 486.940331631162 NaN 0 486.9408874511719 PEAK HCD FTMS 0 0 0 9300 51793.7421875 0.45635043500467737 -4 0.12522506713867188 4 Unmodified _DLMRFRKPWPL_ ENST00000422351.5_1_2:43266302-43266656:-|nuORF 1.3296431237094175 0.3383483288439026 2 K{I|L}{I|L} 3 9 13.188 0 0 1.3569 0 0 329.449070389474 285.1315096490844 614.5805800385584 0 0 0 0 0 0 0 0 0 K{I|L}{I|L} 1.3569 - 23 + NaN NaN 112521.2 NaN 6694 2608 9300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9305 47.1 NaN 158390 35 0 32940 0.261 + 25502 SFGFSWFWF 9 37 404.1831754427295 1209.5276969283887 3 404.1833801269531 MULTI HCD FTMS 0 0 0 9300 29377.42578125 0.6266882834050396 -1 0.029842376708984375 5 Unmodified _SFGFSWFWF_ ENSG00000223802|ENST00000623882|CERS1;nc|ENSG00000223802|P27544-2|CERS1 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.818 0 0 1044.4489443422542 0 1044.4489443422542 0 20.395906230238126 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.818 + + 4 + NaN NaN 118790.3 NaN 6695 2608 9300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9306 47.103 NaN 153610 35 0 21211 0.261 + 12354 KNIYKEPNKL 10 59 416.2436853655056 1245.7092266967168 3 416.24383544921875 MULTI HCD FTMS 0 0 0 9300 18651.337890625 0.5431252784022633 18 -0.4402961730957031 6 Unmodified _KNIYKEPNKL_ REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1 2.0860074813731053 0.46426213543441425 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1724 0 0 1080.6307335099964 0 1080.6307335099964 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1724 - 10 + NaN NaN 111021.7 NaN 6696 2608 9300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9308 47.108 NaN 1879900 35 0 258250 0.326 + 562 APEEHPVLL 9 100 502.77415335255756 1003.5337537719151 2 502.7743225097656 MULTI HCD FTMS 0 0 0 9307 1020812.5 0.010930488639969189 35 -0.8855667114257812 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 117.59872219059416 0.0017018906413822257 2 APEEHPV{I|L}{I|L} 9 0 + 59.848 0 0 5.9637 5.9637 89.647 0 0 0 10.910007020922578 10.910007020922578 10.910007020922578 10.910007020922578 0 2.353917193908117 0 0.9476212463643423 0 + + APEEHPV{I|L}{I|L};{[YC]|[HE]}E[PA]PV{I|L}{I|L};[EP]EAHPV{I|L}{I|L};{[YC]|[HE]}E[VP]PA{I|L}{I|L};[VP]{I|L}AHEEP{I|L};[EP]E[HV]PA{I|L}{I|L};{[YC]|[HE]}E[PA]{I|L}VP{I|L};[VP]{I|L}{[YC]|[HE]}EPA{I|L};{[YC]|[HE]}E[VP]P{I|L}A{I|L};{[YC]|[HE]}E[VP]{I|L}PA{I|L} 5.9637;4.8766;4.4162;4.3105;3.8098;3.5329;3.3298;3.2245;3.0127;2.9205 +;-;-;-;-;-;-;-;-;- + 679 + NaN NaN 375605.9 NaN 6697 2609 9307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9309 47.112 NaN 456460 35 0 148820 0.261 + 21998 QFCMFEYPL 9 53 589.2557815162331 1176.4970100992662 2 589.2562866210938 MULTI HCD FTMS 0 0 0 9307 213730.1875 0.8660423028705316 -3 0.07653045654296875 2 Unmodified _QFCMFEYPL_ ENST00000561721.6_1_17:75089357-75138808:+|nuORF 13.90604991867851 0.24021115267848145 2 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5 7 49.623 0 0 4.2178 0 0 543.1555042951187 0 543.1555042951187 0 44.674165578762484 0 0 0 1.1747425010840047 0 0.3807196863200844 0 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 4.2178 - 32 NaN NaN 165291.5 NaN 6698 2609 9307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9310 47.116 NaN 212570 35 0 16635 0.261 + 32330 VYVERAEVL 9 54 539.3006290958108 1076.5867052584215 2 539.3006591796875 MULTI HCD FTMS 0 0 0 9307 90538.3984375 0.13508904215489784 9 -0.22874832153320312 3 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 26.268140514670165 0.13340543277302316 2 [YV]V 3 6 37.76 0 0 3.5073 0 0 0 712.3659151666624 712.3659151666624 10.764837301042718 0 0 0 0 0.8807196863200843 2 0 0 + [YV]V 3.5073 + + 80 + NaN NaN 118684.3 NaN 6699 2609 9307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9311 47.119 NaN 151560 35 0 9768.4 0.261 -1 ADKMDMSL 8 58 492.70411491427404 983.3936768953481 2 492.70416259765625 MULTI HCD FTMS 0 0 0 9307 74309.2109375 0.9154647531913472 7 -0.1722564697265625 4 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 22.736283301280096 0.42650828432173493 2 S{I|L} 2 -1 28.856 0 0 2.9344 0 0 765.2671979021633 0 765.2671979021633 0 13.371804965004639 0 0 0 0.5 0 0.28872548999643577 0 S{I|L} 2.9344 + + 25 NaN NaN 112912.8 NaN 6700 2609 9307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9312 47.123 NaN 68327 35 0 5441.3 0.262 + 12162 KKKKKKVKKI 10 47 419.31559279656494 NaN 0 419.31585693359375 PEAK HCD FTMS 0 0 0 9307 61195.87890625 0.6724665403131503 -242 6.057903289794922 5 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 2 H 1 -1 3.0989 0 0 0.37041 0 0 534.4811173784831 162.05611597232658 696.5372333508096 0 0 0 0 0 0 0 0 0 H 0.37041 - 5 + NaN NaN 90458.9 NaN 6701 2609 9307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9314 47.128 NaN 394730 35 0 59546 0.326 + 34215 YPDPYGGEKL 10 65 569.7743929237647 1137.5342329143293 2 569.7745361328125 MULTI HCD FTMS 0 0 0 9313 212121.5625 0.2554469449397541 -7 0.18504714965820312 1 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 73.1962812333195 0.013798027329456852 2 YPDPYG{[DA]|[EG]}K{I|L} 10 0 + 82.529 0 0 7.2551 7.2551 92.28 0 0 0 52.09569063612989 4.0359843160042175 4.0359843160042175 12.258950235313861 0 2.5356668758921828 1.6989700043360187 0.3807196863200844 0 + + YPDPYG{[DA]|[EG]}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYG{[DA]|[EG]}K{I|L};[DP]YPYG{[DA]|[EG]}K{I|L} 7.2551;6.1774;4.6637 +;+;- + 269 + NaN NaN 144184.8 NaN 6702 2610 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9315 47.132 NaN 135490 35 0 20279 0.261 + 16629 LVYIRESKL 9 53 560.8397896569764 1119.6650263807528 2 560.83935546875 MULTI HCD FTMS 0 0 0 9313 25537.921875 0.013030753665165805 21 -0.5102996826171875 2 Unmodified _LVYIRESKL_ ENSG00000187555|ENST00000344836|USP7;ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7 17.11289562659939 0.2125047172822487 2 {I|L}K{M(Oxidation (M))|F}S{I|L} 5 6 47.251 0 0 4.2201 0 0 0 528.2945040338499 528.2945040338499 40.26084705832169 0 0 0 0 0.3807196863200844 0 0.5 0.3494850021680094 {I|L}K{M(Oxidation (M))|F}S{I|L} 4.2201 - 57 + NaN NaN 97509.2 NaN 6703 2610 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9316 47.136 NaN 87382 35 0 16621 0.261 + 3236 EDNVDPDYW 9 43 576.7280869054894 1151.4416208777786 2 576.72900390625 MULTI HCD FTMS 0 0 0 9313 21578.365234375 0.5345819062490806 -1 0.019779205322265625 3 Unmodified _EDNVDPDYW_ CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant 9.38312468134398 0.279288223203164 2 DYW 3 6 34.693 0 0 3.013 0 0 669.2631092755875 0 669.2631092755875 0 32.47425010840047 0 0 0 0.8494850021680094 0 0 0 + DYW 3.013 + + 13 NaN NaN 94259 NaN 6704 2610 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9317 47.139 NaN 213270 35 0 44475 0.264 + 3229 EDLKNAVSVHH 11 37 416.8825369648837 1247.625781494851 3 416.8823547363281 MULTI HCD FTMS 0 0 0 9313 14445.138671875 0.1529381011774225 -4 0.09630966186523438 4 Unmodified _EDLKNAVSVHH_ ENSG00000156011|ENST00000327040|PSD3;ENST00000518315.5_1_8:18393255-18632402:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;PSD3|p.H1010Lfs*13|1|0.07|ENSG00000156011|chr8:18535863-18535864|-/TGGTCATGGAGCAAAATAGG|frameshift_variant 6.630372943996041 0.3898421031449734 2 DE{I|L} 3 10 48.188 0 0 3.8623 0 0 0 887.4480257254859 887.4480257254859 48.187587626244124 0 0 0 0 0.5 1.6989700043360187 0 0 DE{I|L} 3.8623 - 8 + NaN NaN 114712.5 NaN 6705 2610 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9318 47.142 NaN 53028 35 0 6320.7 0.261 + 20556 PEEEIWEELSV 11 44 453.88123817792405 1358.6218851339722 3 454.2156677246094 MULTI HCD FTMS 0 0 0 9313 18230.013671875 0.34331685464475453 9 -0.23553085327148438 5 Unmodified _PEEEIWEELSV_ ENSG00000198681|ENST00000356661|MAGEA1 2.4347853303010236 0.4082425251555256 2 W 1 10 9.2917 0 0 0.68391 0 0 575.2851674599473 594.2385347955686 1169.523702255516 0 0 0 0 0 0.3807196863200844 0 0 0 + W 0.68391 + + 1 + NaN NaN 88037.1 NaN 6706 2610 9313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9320 47.147 NaN 625290 35 0 51954 0.327 + 8333 GYFGNPQKF 9 82 529.25866547298 1056.50277801276 2 529.2588500976562 MULTI HCD FTMS 0 0 0 9319 271938.25 0.5049640346132104 3 -0.08640289306640625 1 Unmodified _GYFGNPQKF_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3 92.8221339359638 0.0044520161739443126 2 [YG]{M(Oxidation (M))|F}GNPQK{M(Oxidation (M))|F} 9 0 + 84.435 0 0 7.9919 7.9919 92.043 0 0 0 22.632192780232785 69.8786766044421 22.632192780232785 9.208187539523749 0 2.4247425010840047 1.6989700043360187 0 0.7614393726401688 + + [YG]{M(Oxidation (M))|F}GNPQK{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GNP[AG]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGGPQK{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGGP[AG]K{M(Oxidation (M))|F};[YG]{[QN]|[E{I|L}]|[KN]}[WD]K{M(Oxidation (M))|F};[YG]{[WS]|[C(Carbamidomethyl (C)){I|L}]}AAQK{M(Oxidation (M))|F};[YG]{[QN]|[E{I|L}]|[KN]}{[VA]|[{I|L}G]}G[WY];[YG]{[QN]|[E{I|L}]|[KN]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT};[QP]K{M(Oxidation (M))|F}[NG][YG]{M(Oxidation (M))|F} 7.9919;7.1203;7.1203;5.8926;4.8735;4.7985;3.1565;2.9682;2.1717 +;-;-;-;-;-;-;-;- + 367 NaN NaN 174818 NaN 6707 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9321 47.152 NaN 649170 35 0 51947 0.261 + 6685 FPNKQGYVL 9 90 533.289789047833 1064.5650251624659 2 533.2902221679688 MULTI HCD FTMS 0 0 0 9319 249060.265625 0.2711187958652414 -15 0.3854713439941406 2 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 74.92900055777586 0.007493270374442853 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 73.45 0 0 6.8995 6.8995 89.444 0 0 0 17.983324797206286 12.98332479720628 12.98332479720628 9.168950068207451 0 1.6989700043360187 1.3010299956639813 0.4247425010840047 0.5891368308784531 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};[NP]K{M(Oxidation (M))|F}[AG]GYV{I|L};[NP]{M(Oxidation (M))|F}KQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L};[{M(Oxidation (M))|F}V][DP]RGYV{I|L} 6.8995;6.0382;6.0345;6.0345;5.2102;5.1737;4.3453;4.3139;4.224;3.7217 +;-;-;-;-;-;-;-;-;- + 739 NaN NaN 186084.1 NaN 6708 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9322 47.156 NaN 594830 35 0 76001 0.261 + 26175 SPNYDHVVL 9 86 522.2614078787661 1042.5082628243322 2 522.261474609375 MULTI HCD FTMS 0 0 0 9319 249832.796875 0.767141886881385 -3 0.06274795532226562 3 Unmodified _SPNYDHVVL_ ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF 57.24910588100465 0.021429789259086996 2 [PS]NYDHVV{I|L} 9 0 + 48.5 0 0 4.6523 4.6523 89.279 0 0 0 15.452782753583762 18.348688983821887 15.452782753583762 19.921276860725623 0 1.5484550065040281 0 0.5228787452803376 0.6694451763165201 + + [PS]NYDHVV{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MG]|[TS]}DHVV{I|L} 4.6523;2.7414 +;- + 215 NaN NaN 180163.4 NaN 6709 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9323 47.159 NaN 188500 35 0 17700 0.261 + 35444 YYEKLHTYF 9 53 632.306050858589 1262.5975487839778 2 632.3060913085938 MULTI HCD FTMS 0 0 0 9319 97170.7265625 0.4155704438316729 4 -0.10627365112304688 4 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 92.20098385977256 0.0044682926920227755 2 YYEK{I|L}HTY{M(Oxidation (M))|F} 9 0 + 97.418 0 0 7.7157 7.7157 96.236 0 0 0 16.716590673155736 16.478174818886373 16.478174818886373 53.042359562158126 0 2.385151878060192 2 0.7742275032520141 0.7742275032520141 + + YYEK{I|L}HTY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[TA]TY{M(Oxidation (M))|F};[YT]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}KEYY 7.7157;3.5146;2.0452 +;-;- + 235 NaN NaN 114930.6 NaN 6710 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9324 47.162 NaN 298200 35 0 52617 0.261 + 9940 IDMPQDNQKL 10 66 601.2976322298363 1200.5807115264724 2 601.77978515625 MULTI HCD FTMS 0 0 0 9319 6742.03271484375 0.08189736226549818 25 -0.6285896301269531 5 Unmodified _IDMPQDNQKL_ REV__DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000198947|P11532-11|DMD;REV__nc|ENSG00000198947|P11532-12|DMD;REV__nc|ENSG00000198947|P11532-13|DMD;REV__nc|ENSG00000198947|P11532-14|DMD;REV__nc|ENSG00000198947|P11532-15|DMD;REV__nc|ENSG00000198947|P11532-16|DMD;REV__nc|ENSG00000198947|P11532-17|DMD;REV__nc|ENSG00000198947|P11532-18|DMD;REV__nc|ENSG00000198947|P11532-2|DMD;REV__nc|ENSG00000198947|P11532-3|DMD;REV__nc|ENSG00000198947|P11532-4|DMD;REV__nc|ENSG00000198947|P11532-5|DMD;REV__nc|ENSG00000198947|P11532-6|DMD;REV__nc|ENSG00000198947|P11532-7|DMD;REV__nc|ENSG00000198947|P11532-8|DMD;REV__nc|ENSG00000198947|P11532-9|DMD;REV__nc|ENSG00000198947|P11532|DMD 8.745405648335112 0.42901288225909884 2 EVN[C(Carbamidomethyl (C))Q]{I|L} 6 -1 26.956 0 0 2.2452 0 0 130.1327113430471 324.08335291080317 454.2160642538503 0 0 0 0 0 0.5 0 0 0.805462187404089 EVN[C(Carbamidomethyl (C))Q]{I|L} 2.2452 - 138 + NaN NaN 134013.9 NaN 6711 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9325 47.166 NaN 301140 35 0 28214 0.261 + 24868 RYQEALSEL 9 82 554.7849854001621 1107.555417867124 2 554.7853393554688 MULTI HCD FTMS 0 0 0 9319 76403.3359375 0.7089525638275561 1 -0.0298004150390625 6 Unmodified _RYQEALSEL_ ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-2|C1orf43;nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-4|C1orf43 29.84058131909904 0.11198220037953927 2 {I|L}SE{I|L} 4 5 44.68 0 0 4.0342 0 0 647.3046131818375 0 647.3046131818375 0 27.206225184280797 0 0 0 1.1505149978319906 0 0.4247425010840047 0 + {I|L}SE{I|L} 4.0342 + + 137 NaN NaN 127767.5 NaN 6712 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9326 47.169 NaN 96653 35 0 7688.5 0.261 + 10708 IPYMANEYN 9 44 557.7477242342312 1113.4808955352623 2 557.7478637695312 MULTI HCD FTMS 0 0 0 9319 30656.830078125 0.22043178928018473 7 -0.18915557861328125 7 Unmodified _IPYMANEYN_ ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1 3.5964929083625545 0.32375295897743744 2 {I|L}PAA[Y{M(Oxidation (M))|F}]TN 8 5 40.17 0 0 3.6076 0 0 0 233.0569246881469 233.0569246881469 22.110403483680653 0 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {I|L}PAA[Y{M(Oxidation (M))|F}]TN 3.6076 - 69 + NaN NaN 96478.6 NaN 6713 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9327 47.172 NaN 41620 35 0 6605 0.261 -1 IYADNQVMHF 10 30 627.2847225990082 1252.5548922648163 2 627.2865600585938 MULTI HCD FTMS 0 0 0 9319 15639.3583984375 0.4564612800785487 7 -0.18915557861328125 8 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF 12.240655878213236 0.39661705172222156 2 [Y{I|L}]AD 4 -1 43.94 0 0 3.508 0 0 0 787.3241671197874 787.3241671197874 41.46591250700361 0 0 0 0 0.9247425010840047 2 0 0 [Y{I|L}]AD 3.508 + + 7 + NaN NaN 96465.2 NaN 6714 2611 9319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9329 47.177 NaN 227030 35 0 22905 0.327 + 8664 HFIAEHYMF 9 61 605.7708189559607 1209.5270849787214 2 605.7711791992188 MULTI HCD FTMS 0 0 0 9328 96861.5078125 0.7026640002520875 4 -0.10286331176757812 1 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 97.07464715276575 0.004340583992084827 2 {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 75.372 0 0 6.2315 6.2315 85.222 0 0 0 2.0289375146764854 5.268024924119672 2.0289375146764854 2.0289375146764854 0 2.548455006504028 1.6989700043360187 0.3054621874040891 0 + + {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}H{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}A[{M(Oxidation (M))|F}T][WC(Carbamidomethyl (C))]E 6.2315;6.0638;5.796;3.3366 +;-;+;- + 74 NaN NaN 113384.1 NaN 6715 2612 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9330 47.182 NaN 339460 35 0 23720 0.261 + 1358 AYPHNLMTF 9 76 555.2577148688594 1108.5008768045186 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9328 92997.015625 0.06357967130306104 18 -0.4410514831542969 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 68.08070601005525 0.009709267492204555 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 4 + 41.154 0 0 3.7126 3.7126 88.858 0 0 0 10.091730041082485 11.650378042405904 10.091730041082485 28.22682509756042 0 1.579689690656103 2 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PG][VP]C{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.7126;1.1662 -;- 284 NaN NaN 134340.1 NaN 6716 2612 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9331 47.186 NaN 121960 35 0 7973.5 0.261 + 34650 YPSEQEKLSL 10 55 597.3060057204249 1192.5974585076497 2 597.3060913085938 MULTI HCD FTMS 0 0 0 9328 99982.203125 0.6960798615337739 4 -0.10286331176757812 3 Unmodified _YPSEQEKLSL_ ENSG00000118707|ENST00000373872|TGIF2;nc|ENSG00000118707|Q9GZN2-2|TGIF2 49.74193281347159 0.07872806610313077 2 EK{I|L}S{I|L} 5 5 43.716 0 0 3.6657 0 0 604.2530995099625 0 604.2530995099625 0 17.74735947860492 0 0 0 0.9247425010840047 0 0.7302046884880937 0 + EK{I|L}S{I|L} 3.6657 + + 44 NaN NaN 105984.9 NaN 6717 2612 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9332 47.189 NaN 27625 35 0 2264.7 0.261 + 8223 GRQKDHLVKF 10 23 614.3532885106596 1226.692024088119 2 614.3516845703125 MULTI HCD FTMS 0 0 0 9328 12210.8232421875 0.43538143029291443 1 -0.019992828369140625 4 Unmodified _GRQKDHLVKF_ REV__ENSG00000164347|ENST00000296805|GFM2;REV__GFM2|p.H539Qfs*7|1|0.21|ENSG00000164347|chr5:74730369-74730370|-/T|frameshift_variant;REV__nc|ENSG00000164347|Q969S9-3|GFM2;REV__nc|ENSG00000164347|Q969S9-4|GFM2;REV__nc|ENSG00000164347|Q969S9-5|GFM2 2.9952420565917617 0.4594494122822477 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91938.3 NaN 6718 2612 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9333 47.192 NaN 130750 35 0 10675 0.264 + 22692 QYAAFKRWHF 10 54 451.89961328011105 1352.6770104405332 3 451.899658203125 MULTI HCD FTMS 0 0 0 9328 22359.755859375 0.22854577094114775 -4 0.09254837036132812 5 Unmodified _QYAAFKRWHF_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;nc|ENSG00000112031|Q9UGC7-3|MTRF1L 18.373094154950223 0.33925629317698053 2 {M(Oxidation (M))|F} 1 9 19.732 0 0 1.4587 0 0 1187.5980137137738 0 1187.5980137137738 0 16.237125054200234 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.4587 + + 9 + NaN NaN 106102.6 NaN 6719 2612 9328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9335 47.197 NaN 926670 35 0 72653 0.326 + 35437 YYEKLHTYF 9 83 421.8731201589613 1262.5975310770839 3 421.8731384277344 MULTI HCD FTMS 0 0 0 9334 426919.46875 0.3436036912573086 5 -0.13936233520507812 1 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 40.23920728925047 0.06424668180817725 2 YY{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HK]{I|L}E 8 6 50.667 0 0 4.0129 0 0 0 132.0454043024047 132.0454043024047 26.453650195120844 0 0 0 0 0.4247425010840047 2 0.7742275032520141 0.3807196863200844 YY{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HK]{I|L}E 4.0129 - 142 + NaN NaN 223497.2 NaN 6720 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9336 47.202 NaN 702090 35 0 103550 0.261 + 25379 SEFLKKSTF 9 92 543.7951299830979 NaN 0 543.78271484375 PEAK HCD FTMS 0 0 0 9334 13098.0302734375 1 0 0 2 Unmodified _SEFLKKSTF_ ENSG00000006116|ENST00000005284|CACNG3 23.1484247019978 0.16626532474190622 2 DNTV[{I|L}P]ST 8 7 30.826 0 0 2.8396 0 0 93.08355854473719 162.05599390201408 255.13955244675128 0 0 0 0 0 0 0 1.1976212463643423 0 DNTV[{I|L}P]ST 2.8396 - 423 + NaN NaN 196862.7 NaN 6721 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9337 47.206 NaN 284910 35 0 47380 0.261 + 15253 LPAAGVGDMVM 11 59 546.756757525833 1091.498962118466 2 546.7567138671875 MULTI HCD FTMS 0 0 0 9334 177383.703125 0.1500620231217418 8 -0.22211837768554688 3 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 111.28704002717404 0.01943762955880584 2 [PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 2 + 91.975 0 0 8.4265 8.4265 90.486 0 0 0 2.811672978144159 79.411776505185 2.811672978144159 6.008337601396846 0 3.774227503252014 0 0.7302046884880937 0 [PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YT][YT][W{I|L}]V{M(Oxidation (M))|F};[YT][W{I|L}][YT]V{M(Oxidation (M))|F} 8.4265;7.876;7.3659;2.2159;1.8267 -;-;-;-;- 601 NaN NaN 131966 NaN 6722 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9338 47.209 NaN 361540 35 0 21573 0.261 + 34262 YPDRIMNTF 9 78 586.7737544853795 1171.532956037559 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9334 208269.203125 0.04636610172953545 29 -0.7402725219726562 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 88.36371040165146 0.004568843997105255 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 70.471 0 0 6.0153 6.0153 84.331 0 0 0 0.8154565500199453 0.8154565500199453 0.8154565500199453 0.8154565500199453 0 1.7881068352144718 1.3979400086720375 0.5 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 6.0153;5.9457;5.5243;5.2293;5.0627;4.9256;4.9178;4.7383;4.2767;4.1318 +;+;-;-;-;-;-;-;-;- + 1022 NaN NaN 147131.6 NaN 6723 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9339 47.212 NaN 356830 35 0 20961 0.261 + 21964 QELQEINRVY 10 75 646.3356264830734 1290.6567000329467 2 646.336181640625 MULTI HCD FTMS 0 0 0 9334 102473.328125 0.9595572305032805 1 -0.036609649658203125 5 Unmodified _QELQEINRVY_ ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 34.79049567835207 0.19061425483009314 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}QE{I|L}NRVY 10 0 + 45.328 0 0 3.512 3.512 84.313 0 0 0 17.44009708316895 9.131806016604358 9.131806016604358 9.164539485499247 0 1.8494850021680094 0 0 0 + + {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}QE{I|L}NRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}QE{I|L}GGRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[AG]E{I|L}NRVY;[TP][TA]QE{I|L}NRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Q{[QV]|[N{I|L}]|[RA]|[KV]}ERVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[AG]E{I|L}GGRVY;[TP]V[NS]E{I|L}NRVY;[TP][TA]QE{I|L}GGRVY;[TP][TA][AG]E{I|L}NRVY;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[AG]{[QV]|[N{I|L}]|[RA]|[KV]}ERVY 3.512;2.8019;2.8019;2.5696;2.4289;2.0946;1.949;1.8623;1.8623;1.7188 +;-;-;-;-;-;-;-;-;- + 281 + NaN NaN 138684.9 NaN 6724 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9340 47.215 NaN 374880 35 0 33242 0.262 + 16711 LYADVGGKQF 10 75 549.284712799051 1096.554872664902 2 549.2850952148438 MULTI HCD FTMS 0 0 0 9334 129705.375 0.29324293934756007 -3 0.06960678100585938 6 Unmodified _LYADVGGKQF_ ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF 117.76058876431921 4.161225987453182E-05 2 [Y{I|L}]ADVGGKQ{M(Oxidation (M))|F} 10 0 + 110.77 0 0 10.102 10.102 92.79 0 0 0 2.134679910804408 2.134679910804408 2.134679910804408 7.769250191953674 0 3.548455006504028 2 0.28872548999643577 0.6307196863200843 + + [Y{I|L}]ADVGGKQ{M(Oxidation (M))|F};[Y{I|L}]ADVNKQ{M(Oxidation (M))|F};[Y{I|L}]ADVGGK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVNK[AG]{M(Oxidation (M))|F};[YG]E{I|L}VGGKQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VS]VGGKQ{M(Oxidation (M))|F};[YG]E{I|L}VNKQ{M(Oxidation (M))|F};[YG]E{I|L}VGGK[AG]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YG]VGGKQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VS]VNKQ{M(Oxidation (M))|F} 10.102;9.3935;9.0716;8.3591;6.648;5.9949;5.9395;5.8122;5.6477;5.2864 +;-;-;-;-;-;-;-;-;- + 997 + NaN NaN 162808.4 NaN 6725 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9341 47.219 NaN 127330 35 0 9112.7 0.261 + 34730 YPVKYTQTF 9 59 573.7951504729718 1145.5757480127436 2 573.7951049804688 MULTI HCD FTMS 0 0 0 9334 66375.9921875 0.29550693568340386 6 -0.165924072265625 7 Unmodified _YPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 31.26834338654808 0.10542797264966089 2 YPV 3 6 44.654 0 0 3.8979 0 0 0 783.3673800104124 783.3673800104124 16.694699959806982 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 + YPV 3.8979 + + 15 + NaN NaN 99230.4 NaN 6726 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9342 47.222 NaN 140800 35 0 19858 0.264 -1 0 43 424.08158051091766 NaN 0 424.08172607421875 PEAK HCD FTMS 0 0 0 9334 84757.2421875 0.5596953202263972 35 -0.8946037292480469 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103841.5 NaN 6727 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9343 47.226 NaN 317550 35 0 40774 0.261 + 2219 DIVKGDPEL 9 65 493.26362170605074 984.5126904789015 2 493.2638244628906 MULTI HCD FTMS 0 0 0 9334 88463.1015625 0.5708090944103111 -1 0.019992828369140625 9 Unmodified _DIVKGDPEL_ ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion 51.41523569358685 0.02959097413485123 2 {NN|[MP]|[D{I|L}]|[EV]}VK[DG]PE{I|L} 9 0 + 66.124 0 0 6.7165 6.7165 94.505 0 0 0 25.642492736872597 43.44843468456581 25.642492736872597 56.468363042671605 0 1.9247425010840047 2 0.3054621874040891 0 + + {NN|[MP]|[D{I|L}]|[EV]}VK[DG]PE{I|L};[EP]{[CP]|[EA]}[KA]{I|L}D{I|L};[EP]{[CP]|[EA]}[KA]VE{I|L} 6.7165;0.9808;0.8539 +;-;- + 66 NaN NaN 139161.2 NaN 6728 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9344 47.229 NaN 149980 35 0 50919 0.261 -1 KKMVCTTL 8 28 498.7624015056037 995.5102500780074 2 498.76251220703125 MULTI HCD FTMS 0 0 0 9334 31169.88671875 0.6040657886260177 1 -0.036609649658203125 10 Carbamidomethyl (C),Oxidation (M) _KKM(Oxidation (M))VC(Carbamidomethyl (C))TTL_ ENST00000356056.9_1_15:72338923-72410271:-|nuORF 6.723162845929126 0.5320176132289695 2 V{I|L} 2 -1 20.969 0 0 2.1064 0 0 765.3466161384812 0 765.3466161384812 0 14.886831541432315 0 0 0 0 0 0 0 V{I|L} 2.1064 - 9 NaN NaN 109212 NaN 6729 2613 9334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9346 47.234 NaN 426670 35 0 112910 0.327 + 14486 LFAETFKRHLI 11 54 458.9344726591946 1373.7815885777839 3 458.93463134765625 MULTI HCD FTMS 0 0 0 9345 161333.53125 0.8723800959019872 -2 0.05660247802734375 1 Unmodified _LFAETFKRHLI_ ENST00000526600.1_1_11:12965683-12965947:+|nuORF 12.227587767072771 0.3505430386502343 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 35.005 0 0 2.5481 0 0 982.532630117486 0 982.532630117486 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.5481 - 22 NaN NaN 154129.5 NaN 6730 2614 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9347 47.238 NaN 139530 35 0 27487 0.261 + 23547 RPAQVEPLL 9 38 511.80317277438303 1021.5917926155661 2 511.8033142089844 MULTI HCD FTMS 0 0 0 9345 57227.921875 0.12698378633253532 8 -0.1988372802734375 2 Unmodified _RPAQVEPLL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT 12.240655878213236 0.2545997876781172 2 EP{I|L}{I|L} 4 5 41.186 0 0 4.0315 0 0 551.319627830275 0 551.319627830275 0 41.18562527100117 0 0 0 0.9247425010840047 0 0 0 + EP{I|L}{I|L} 4.0315 + + 8 NaN NaN 110109.5 NaN 6731 2614 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9348 47.242 NaN 142310 35 0 10083 0.261 + 21715 QADIEVRAL 9 60 507.78248879895085 1013.5504246647017 2 507.7825622558594 MULTI HCD FTMS 0 0 0 9345 30275.19140625 0.24723972046367873 6 -0.1624908447265625 3 Unmodified _QADIEVRAL_ ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3 15.248480904072842 0.22861284681709862 2 [QA]D{I|L}EV 6 3 23.02 0 0 2.2713 0 0 0 355.2097567193969 355.2097567193969 6.822581265925436 0 0 0 0 0 0 0 0 + [QA]D{I|L}EV 2.2713 + + 48 + NaN NaN 107825.9 NaN 6732 2614 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9349 47.245 NaN 243750 35 0 22048 0.261 + 27322 SYQRAFNEF 9 67 581.2693635144044 1160.5241740956087 2 581.2697143554688 MULTI HCD FTMS 0 0 0 9345 99662.6328125 0.5757271451954413 -2 0.05660247802734375 4 Unmodified _SYQRAFNEF_ ENSG00000185215|ENST00000560869|TNFAIP2 97.74103586103693 0.004323122048066454 2 {[{M(Oxidation (M))|F}C]|[YS]}QRA{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 85.174 1.338 0.53501 7.3393 7.3393 66.243 0 0 0 0 68.57561549817893 0 0 0 2.7887254899964358 0 0.9247425010840047 1.110924374808178 + + {[{M(Oxidation (M))|F}C]|[YS]}QRA{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 7.3393 + + 379 + NaN NaN 118316.8 NaN 6733 2614 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9350 47.249 NaN 60808 35 0 6394.2 0.262 + 32655 WNIYRRYTEF 10 34 483.24210465121894 1446.704484553857 3 484.2646789550781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _WNIYRRYTEF_ ENSG00000048471|ENST00000566228|SNX29;MGRN1-SNX29|1|fusion;nc|ENSG00000048471|Q8TEQ0-2|SNX29 0.6976657623105312 0.47161084886498755 2 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.0703 0 0 1281.625625156199 0 1281.625625156199 0 8.037275116073344 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0703 + + 8 + NaN NaN 97057.1 NaN 6734 2614 9345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9352 47.254 NaN 297420 35 0 94048 0.327 + -1 CYFDMWALI 9 59 589.2557815162331 1176.4970100992662 2 589.2562255859375 MULTI HCD FTMS 0 0 0 9351 148757.75 0.6027716809065112 3 -0.08288192749023438 1 Oxidation (M) _CYFDM(Oxidation (M))WALI_ REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF 12.531546534597751 0.2520865569484384 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 44.993 0 0 3.8243 0 0 656.2403431623062 0 656.2403431623062 0 34.53524722859527 0 0 0 0.9247425010840047 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.8243 - 21 NaN NaN 126368.3 NaN 6735 2615 9351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9353 47.258 NaN 207210 35 0 27060 0.455 + 23750 RRFPDWWALLV 11 63 486.940331631162 NaN 0 486.9402160644531 PEAK HCD FTMS 0 0 0 9351 39203.890625 0.3454222804721826 3 -0.08288192749023438 2 Unmodified _RRFPDWWALLV_ REV__ENST00000341068.7_1_2:112636532-112638251:-|nuORF;REV__ENST00000467878.1_1_2:112638179-112638251:-|nuORF 1.214830529360525 0.33867401910978034 2 A{I|L}[MT]{I|L} 5 -1 9.2082 0 0 0.94747 0 0 185.42349665900525 254.1145418756469 439.5380385346522 0 0 0 0 0 0 0 0 0 A{I|L}[MT]{I|L} 0.94747 - 38 + NaN NaN 126196.8 NaN 6736 2615 9351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9354 47.265 NaN 279180 35 0 19781 0.261 -1 YPHWPARIDEM 11 65 477.5554507177329 1429.6445227533989 3 477.55560302734375 MULTI HCD FTMS 0 0 0 9351 59146.4609375 0.6511989910766156 2 -0.0563201904296875 3 Oxidation (M) _YPHWPARIDEM(Oxidation (M))_ ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000495212.1_1_1:156715087-156721275:-|nuORF 9.764250979337305 0.37200617284565546 2 A{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.6059 0 0 1193.5619402112097 0 1193.5619402112097 0 6.7609125905568135 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 1.6059 - 212 + NaN NaN 120905.1 NaN 6737 2615 9351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9355 47.268 NaN 226150 35 0 29888 0.261 + 9523 HQRSVGRGSM 10 52 557.779615435551 1113.544677937902 2 557.7796630859375 MULTI HCD FTMS 0 0 0 9351 100088.3671875 0.9459698976072068 -1 0.019870758056640625 4 Unmodified _HQRSVGRGSM_ REV__ENST00000496200.5_1_7:128043769-128045952:-|nuORF 9.38312468134398 0.42334543440173333 2 VTN{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 49.208 0 0 4.4191 0 0 563.3087867631498 0 563.3087867631498 0 41.249387366083 0 0 0 1.5 0 0.8494850021680094 0.3494850021680094 VTN{[MS]|[{M(Oxidation (M))|F}A]} 4.4191 - 35 NaN NaN 114280.5 NaN 6738 2615 9351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9356 47.272 NaN 131240 35 0 10936 0.261 + 32331 VYVERAEVL 9 51 539.3006290958108 1076.5867052584215 2 539.300048828125 MULTI HCD FTMS 0 0 0 9351 26578.375 0.039656623960078345 15 -0.3645782470703125 5 Unmodified _VYVERAEVL_ ENSG00000089234|ENST00000419234|BRAP 20.41453444215458 0.18397929046831515 2 VM{I|L} 3 7 29.085 0 0 2.7016 0 0 715.38774306465 0 715.38774306465 0 20.986198691406326 0 0 0 0.28872548999643577 0 0 0 VM{I|L} 2.7016 - 35 NaN NaN 102125.5 NaN 6739 2615 9351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9357 47.275 NaN 145410 35 0 17881 0.261 + 27807 TAVLLTDIN 9 66 480.27387710005763 958.5332012669153 2 480.2737731933594 MULTI HCD FTMS 0 0 0 9351 17685.44140625 0.2112155939291961 -5 0.12608718872070312 6 Unmodified _TAVLLTDIN_ REV__ENSG00000125107|ENST00000317147|CNOT1;REV__nc|ENSG00000125107|A5YKK6-2|CNOT1;REV__nc|ENSG00000125107|A5YKK6-3|CNOT1;REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 7.289230182591677 0.29575926068275815 2 {I|L}P 2 -1 18.583 0 0 1.9387 0 0 0 745.3715304010374 745.3715304010374 4.102649242617602 0 0 0 0 0 0 0 0 {I|L}P 1.9387 - 74 + NaN NaN 105318.9 NaN 6740 2615 9351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9359 47.28 NaN 1173100 35 0 176050 0.327 + 34216 YPDPYGGEKL 10 87 569.7743929237647 1137.5342329143293 2 569.7744750976562 MULTI HCD FTMS 0 0 0 9358 732911.3125 0.8826069046606727 -1 0.02639007568359375 1 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 128.5786326129116 2.249882698014817E-05 2 YPDPYGGEK{I|L} 10 0 + 112.78 0 0 9.9146 9.9146 95.035 0 0 0 14.357285695614394 9.841835760654675 9.841835760654675 9.841835760654675 0 3.385151878060192 1.5228787452803376 1.3539171939081172 0.5451140161145328 + + YPDPYGGEK{I|L};YPKGGYPDE{I|L};YPDPYNEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGEK{I|L};YPKNYPDE{I|L};[DP]YPYGGKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L};[DP]YPYGGEK{I|L};[DP]YPYNKE{I|L} 9.9146;9.0495;8.967;8.6525;8.3003;8.2629;8.1978;7.9034;7.8385;7.5137 +;-;-;+;-;-;-;-;-;- + 2976 + NaN NaN 253402.3 NaN 6741 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9360 47.284 NaN 216040 35 0 44814 0.261 + 33010 YAYDGKDYL 9 58 554.2531335341288 1106.4917141350575 2 554.2533569335938 MULTI HCD FTMS 0 0 0 9358 82758.8515625 0.7726395948860697 -2 0.046260833740234375 2 Unmodified _YAYDGKDYL_ ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G 45.739877483867886 0.03899552410870734 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]DY{I|L} 9 0 + 71.092 0 0 6.425 6.425 94.325 0 0 0 7.604765324935698 55.123337350737245 7.604765324935698 71.09243748081781 0 2 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YD[KG]DY{I|L} 6.425 + + 107 NaN NaN 116713.4 NaN 6742 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9361 47.288 NaN 252130 35 0 52695 0.264 + 2062 DEISRSWSRL 10 51 416.8825369648837 1247.625781494851 3 416.8824157714844 MULTI HCD FTMS 0 0 0 9358 56318.36328125 0.5962714334078898 2 -0.056491851806640625 3 Unmodified _DEISRSWSRL_ REV__ENSG00000161791|ENST00000335154|FMNL3;REV__nc|ENSG00000161791|Q8IVF7|FMNL3 5.296884461304476 0.4472664531305844 2 DE{I|L} 3 -1 48.188 0 0 3.8623 0 0 0 887.4481145132917 887.4481145132917 48.187587626244124 0 0 0 0 0.5 1.6989700043360187 0 0 DE{I|L} 3.8623 + + 5 + NaN NaN 123582.2 NaN 6743 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9362 47.292 NaN 176590 35 0 11806 0.261 + 8334 GYFGNPQKF 9 61 529.25866547298 1056.50277801276 2 529.2587890625 MULTI HCD FTMS 0 0 0 9358 75026.703125 0.13931760873554036 8 -0.20540237426757812 4 Unmodified _GYFGNPQKF_ ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3 57.47134341890925 0.0211188941628804 2 [YG]{M(Oxidation (M))|F}GN[QP]K{M(Oxidation (M))|F} 9 0 + 68.949 0 0 6.5261 6.5261 89.456 0 0 0 24.155462488490684 55.476146931408294 24.155462488490684 9.208187539523749 0 1.9247425010840047 2 0 0.7059771852360797 + + [YG]{M(Oxidation (M))|F}GN[QP]K{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}GGG[QP]K{M(Oxidation (M))|F};[YG]{[QN]|[E{I|L}]|[KN]}[WD]K{M(Oxidation (M))|F};[YG][YK][HD]K{M(Oxidation (M))|F};[YG]{[QN]|[E{I|L}]|[KN]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT};[YG][YK]{[{M(Oxidation (M))|F}H]|[RQ]}{[QD]|[EN]|[WG]|[KD]|[RS]};[QP]KSWW[EP] 6.5261;5.6545;4.2348;4.0882;2.597;1.0548;0.70538 +;-;-;-;-;-;- + 257 NaN NaN 117584.5 NaN 6744 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9363 47.295 NaN 157110 35 0 24906 0.261 + 11685 IYYTGKYQSL 10 53 618.3188644038437 1234.6231758744873 2 618.319091796875 MULTI HCD FTMS 0 0 0 9358 63732.49609375 0.865463324565635 -3 0.0828704833984375 5 Unmodified _IYYTGKYQSL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 47.594388314883695 0.08653821083322558 2 [Y{I|L}]YT[RV]Y 7 5 51.739 0 0 4.1906 0 0 0 273.1243343009473 273.1243343009473 26.9622725880631 0 0 0 0 0.5 2 0.75 0.3252574989159953 [Y{I|L}]YT[RV]Y 4.1906 - 58 NaN NaN 107089.6 NaN 6745 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9364 47.298 NaN 172550 35 0 8235.2 0.261 + 28860 TVQQGQDASF 10 67 540.7509558848861 1079.4873588365722 2 541.251708984375 MULTI HCD FTMS 0 0 0 9358 50837.96875 0.6979309806337523 -1 0.02639007568359375 6 Unmodified _TVQQGQDASF_ ENSG00000142798|ENST00000374695|HSPG2 18.1463463914782 0.3413772152514074 2 [Y{I|L}]ST[YT]VS{M(Oxidation (M))|F} 9 8 [Y{I|L}]ST[YT]V + + 28.271 20.969 2.5344 2.6189 2.6189 59.953 0 0 0 0 4.380302568203259 0 0 0 0.3807196863200844 0 0.3494850021680094 0 [Y{I|L}]ST[YT]VS{M(Oxidation (M))|F} 2.6189 - 224 + NaN NaN 101571.5 NaN 6746 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9365 47.302 NaN 93636 35 0 13415 0.261 -1 LFDDIDHNM 9 43 568.2399811624309 1134.4654093916618 2 568.2401733398438 MULTI HCD FTMS 0 0 0 9358 16529.529296875 0.4744913068337337 -1 0.02639007568359375 7 Oxidation (M) _LFDDIDHNM(Oxidation (M))_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-4|OGA 27.628801355627647 0.12213550946336599 2 [YV]{I|L} 3 -1 21.963 0 0 1.936 0 0 0 756.2257603040242 756.2257603040242 7.578474942632594 0 0 0 0 0 1.3010299956639813 0 0 [YV]{I|L} 1.936 - 19 NaN NaN 108227.7 NaN 6747 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9366 47.305 NaN 61291 35 0 6409.9 0.261 + 5288 FFFGWMTL 8 39 524.7525927519562 1047.4906325707123 2 524.7528686523438 MULTI HCD FTMS 0 0 0 9358 27346.88671875 0.3457352278109124 8 -0.20540237426757812 8 Unmodified _FFFGWMTL_ ENSG00000126773|ENST00000406854|PCNX4 5.230669730166228 0.5342319408533849 2 T{I|L} 2 6 25.969 0 0 2.4792 0 0 815.3501221844131 0 815.3501221844131 0 25.969100130080562 0 0 0 0.5 0 0 0 + T{I|L} 2.4792 + + 3 NaN NaN 109009.8 NaN 6748 2616 9358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9368 47.31 NaN 1167600 35 0 99399 0.326 + 6686 FPNKQGYVL 9 91 533.289789047833 1064.5650251624659 2 533.2901000976562 MULTI HCD FTMS 0 0 0 9367 565293.875 0.615360279631101 -9 0.225341796875 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 74.92900055777586 0.007493270374442853 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 80.778 0 0 7.5879 7.5879 91.339 0 0 0 21.46591250700361 13.46787486224656 13.46787486224656 9.208187539523749 0 1.805462187404089 1.5228787452803376 0.4247425010840047 0.6694451763165201 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGVY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQAT{M(Oxidation (M))|F}{I|L} 7.5879;6.7229;6.7229;5.9122;5.862;5.8591;5.5715;5.5384;5.3365;5.2316 +;-;-;-;-;-;-;-;-;- + 2382 NaN NaN 266927.1 NaN 6749 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9369 47.314 NaN 448860 35 0 52679 0.261 + 26176 SPNYDHVVL 9 80 522.2614078787661 1042.5082628243322 2 522.261474609375 MULTI HCD FTMS 0 0 0 9367 168127.375 0.5162554848971496 3 -0.08629989624023438 2 Unmodified _SPNYDHVVL_ ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF 47.594388314883695 0.03493607795751234 2 HVV{I|L} 4 5 32.167 0 0 3.0855 0 0 576.216600486525 0 576.216600486525 0 5 0 0 0 0.5 0 0 0 + HVV{I|L} 3.0855 + + 214 NaN NaN 158211.5 NaN 6750 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9370 47.318 NaN 717120 35 0 75428 0.261 + 9779 HYKPTPLYF 9 85 583.3055525579356 1164.596552182671 2 583.3057861328125 MULTI HCD FTMS 0 0 0 9367 345049.1875 0.2414714766176523 -6 0.16259384155273438 3 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 62.57269311338072 0.013982455292112035 2 HYK[TP][{I|L}P]Y{M(Oxidation (M))|F} 9 0 + 51.378 0 0 4.4116 4.4116 84.669 0 0 0 7.302046884880937 7.744908942936917 7.302046884880937 7.759621790487685 0 1.8494850021680094 1.6989700043360187 0.2302046884880938 0 + + HYK[TP][{I|L}P]Y{M(Oxidation (M))|F};[{I|L}P]Y[HK][TP]Y{M(Oxidation (M))|F};[{I|L}P]Y{[WN]|[YH]}KTP{M(Oxidation (M))|F};[{I|L}P]Y[HK]YTP{M(Oxidation (M))|F};{[WN]|[YH]}KY[TP]{I|L}P{M(Oxidation (M))|F};[{I|L}P]Y{[VA]|[{I|L}G]}[VG]HY{M(Oxidation (M))|F};{[WN]|[YH]}KY[{I|L}P]TP{M(Oxidation (M))|F};[{I|L}P]W[YN]KTP{M(Oxidation (M))|F};[{I|L}P]{[HG]|PP}{[CT]|[{M(Oxidation (M))|F}G]}Y{I|L}[YV];[YV]{I|L}[HN][{I|L}P]Y{M(Oxidation (M))|F} 4.4116;3.7453;3.4154;3.4154;3.2495;3.1316;3.113;2.9483;1.2169;0.79086 +;-;-;-;-;-;-;-;-;- + 473 + NaN NaN 194594.1 NaN 6751 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9371 47.322 NaN 224240 35 0 40859 0.261 + 8142 GPDHMKEFEI 10 63 601.7791605172606 1201.5437681013211 2 601.7792358398438 MULTI HCD FTMS 0 0 0 9367 127950.8671875 0.6811152171343632 13 -0.308258056640625 4 Unmodified _GPDHMKEFEI_ tr|U7T2I2|U7T2I2_FUSNURibonuclease3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rncPE=3SV=1 21.536976647645854 0.3096624038397699 2 EMANVE{I|L} 7 7 46.247 0 0 3.849 0 0 397.170213767775 0 397.170213767775 0 31.325316593138837 0 0 0 0.5484550065040282 0 0.3807196863200844 0.8494850021680094 EMANVE{I|L} 3.849 - 156 NaN NaN 124950.7 NaN 6752 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9372 47.325 NaN 139560 35 0 22320 0.262 + 12711 KWYDRRDYVF 10 47 483.24210465121894 1446.704484553857 3 483.57672119140625 MULTI HCD FTMS 0 0 0 9367 21092.06640625 0.4445637452380541 -5 0.13279342651367188 5 Unmodified _KWYDRRDYVF_ ENSG00000110958|ENST00000262033|PTGES3;ENST00000537473.2_1_12:57059942-57081218:-|nuORF;nc|ENSG00000110958|Q15185-2|PTGES3;nc|ENSG00000110958|Q15185-3|PTGES3;nc|ENSG00000110958|Q15185-4|PTGES3 9.764250979337305 0.4197805076029805 2 DP{M(Oxidation (M))|F} 3 8 26.95 0 0 1.8629 0 0 1069.5430598485818 0 1069.5430598485818 0 5.981362441963327 0 0 0 0.4247425010840047 0 0 0 DP{M(Oxidation (M))|F} 1.8629 - 14 + NaN NaN 101413.7 NaN 6753 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9373 47.328 NaN 136120 35 0 12875 0.261 + 8918 HPDGVASVSF 10 65 508.24568207604153 1014.4768112188831 2 508.2456359863281 MULTI HCD FTMS 0 0 0 9367 40809.53515625 0.8189427345926381 -1 0.02993011474609375 6 Unmodified _HPDGVASVSF_ ENSG00000102241|ENST00000218364|HTATSF1 17.11289562659939 0.35104376501799556 2 SSVS{M(Oxidation (M))|F} 5 6 45.433 0 0 4.4785 0 0 489.2270985334 0 489.2270985334 0 35.76728783671072 0 0 0 1.3494850021680094 0 0 0 SSVS{M(Oxidation (M))|F} 4.4785 - 56 NaN NaN 118845.6 NaN 6754 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9374 47.332 NaN 61712 35 0 4591.1 0.261 + 35445 YYEKLHTYF 9 49 632.306050858589 1262.5975487839778 2 632.3062133789062 MULTI HCD FTMS 0 0 0 9367 38018.875 0.1625954782541291 10 -0.23146438598632812 7 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 19.625955294349634 0.19079243933902879 2 YYE 3 6 36.567 0 0 2.8962 0 0 0 804.4066866510374 804.4066866510374 8.39149333932717 0 0 0 0 0.4247425010840047 2 0.4247425010840047 0 + YYE 2.8962 + + 18 + NaN NaN 93382.1 NaN 6755 2617 9367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9376 47.337 NaN 370990 35 0 28755 0.326 + 35438 YYEKLHTYF 9 57 421.8731201589613 1262.5975310770839 3 421.8730773925781 MULTI HCD FTMS 0 0 0 9375 100151.0859375 0.08060602837418136 10 -0.23810195922851562 1 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 28.494509381512117 0.11816142465008336 2 YY 2 7 45.217 0 0 3.5812 0 0 0 933.4467626952643 933.4467626952643 23.010299956639813 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5812 + + 39 + NaN NaN 151598.5 NaN 6756 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9377 47.341 NaN 364270 35 0 56384 0.261 -1 MLRMTVTL 8 67 498.7624015056037 995.5102500780074 2 498.771728515625 MULTI HCD FTMS 0 0 0 9375 23825.01171875 0.4617236701169502 6 -0.1489105224609375 2 2 Oxidation (M) _M(Oxidation (M))LRM(Oxidation (M))TVTL_ ENST00000558551.1_1_14:103803061-103803187:+|nuORF 21.74664581756881 0.4337896562907935 2 GEVV{I|L} 5 -1 34.17 0 0 3.4324 0 0 480.21211440254064 0 480.21211440254064 0 4.120768972555595 0 0 0 0 0 0.6747425010840047 0 GEVV{I|L} 3.4324 - 235 NaN NaN 141714.2 NaN 6757 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9378 47.345 NaN 227570 35 0 16845 0.261 + 22693 QYAAFKRWHF 10 50 451.89961328011105 1352.6770104405332 3 451.8996276855469 MULTI HCD FTMS 0 0 0 9375 45799.7578125 0.46813306120187 2 -0.0597381591796875 3 Unmodified _QYAAFKRWHF_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;nc|ENSG00000112031|Q9UGC7-3|MTRF1L 24.881564428377168 0.27837825820855233 2 {M(Oxidation (M))|F}MH{M(Oxidation (M))|F} 4 7 33.928 0 0 2.5082 0 0 772.4124506711535 0 772.4124506711535 0 23.470325397914564 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}MH{M(Oxidation (M))|F} 2.5082 - 25 NaN NaN 137181.1 NaN 6758 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9379 47.348 NaN 202500 35 0 24319 0.261 + 24972 RYTLQASTF 9 63 543.7825792427805 1085.5506055523608 2 543.7825927734375 MULTI HCD FTMS 0 0 0 9375 74679.7109375 0.17005208192497973 7 -0.16869354248046875 4 Unmodified _RYTLQASTF_ ENSG00000055130|ENST00000325222|CUL1 15.248480904072842 0.22861284681709862 2 AST{M(Oxidation (M))|F} 4 5 39.412 0 0 3.6306 0 0 661.3524037091812 0 661.3524037091812 0 20.74031267727719 0 0 0 1 0 0.5 0 + AST{M(Oxidation (M))|F} 3.6306 + + 66 NaN NaN 111391.9 NaN 6759 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9380 47.351 NaN 138620 35 0 8829.1 0.261 + 19420 NPKTDSLGLL 10 59 529.2980547435833 1056.5815565539665 2 529.2982177734375 MULTI HCD FTMS 0 0 0 9375 28008.095703125 0.00966990720457068 26 -0.6568183898925781 5 Unmodified _NPKTDSLGLL_ REV__nc|ENSG00000291239|Q3ZCX4-3|ZNF568 21.536976647645854 0.3096624038397699 2 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.4795 0 0 616.3726770147072 0 616.3726770147072 0 6.460828060918828 0 0 0 0 0 0 0 {M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.4795 - 130 + NaN NaN 103426.9 NaN 6760 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9381 47.355 NaN 117730 35 0 11550 0.261 + 24737 RYLVISEKL 9 41 560.8397896569764 1119.6650263807528 2 560.83984375 MULTI HCD FTMS 0 0 0 9375 31853.5 0.0162532845822389 29 -0.7256546020507812 6 Unmodified _RYLVISEKL_ ENSG00000116212|ENST00000371370|LRRC42 11.494710602746466 0.2610445893512368 2 {I|L}SEK{I|L} 5 4 33.94 0 0 3.0313 0 0 531.311337489388 0 531.311337489388 0 26.95046257204389 0 0 0 0.4247425010840047 0 0 0 + {I|L}SEK{I|L} 3.0313 + + 21 NaN NaN 102690.8 NaN 6761 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9382 47.358 NaN 83748 35 0 6108.8 0.261 + 11848 KEYRLSAI 8 58 490.2824794068531 978.5504058805062 2 490.2824401855469 MULTI HCD FTMS 0 0 0 9375 35491.69140625 1 0 0 7 Unmodified _KEYRLSAI_ ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24792605-24795062:-|nuORF;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4 14.838274106304384 0.4846187982323419 2 {I|L}SA{I|L} 4 4 20.886 0 0 2.1343 0 0 576.3035755841812 0 576.3035755841812 0 18.66705324519962 0 0 0 0.8182503180159344 0 0 0 + {I|L}SA{I|L} 2.1343 + + 25 NaN NaN 98935.5 NaN 6762 2618 9375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9384 47.363 NaN 542420 35 0 58114 0.327 + 16712 LYADVGGKQF 10 76 549.284712799051 1096.554872664902 2 549.2849731445312 MULTI HCD FTMS 0 0 0 9383 334636.53125 0.7565592407933877 3 -0.06952285766601562 1 Unmodified _LYADVGGKQF_ ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF 132.37960578797484 1.4931105950829253E-05 2 {I|L}YADVGGKQ{M(Oxidation (M))|F} 10 0 + 134.21 0 0 12.239 12.239 95.68 0 0 0 110.51906020622658 16.532125137753425 16.532125137753425 10.383643918355347 0 3.6237125054200234 2 0.3494850021680094 1.360924374808178 + + {I|L}YADVGGKQ{M(Oxidation (M))|F};{I|L}YADVNKQ{M(Oxidation (M))|F};{I|L}YADVGGK[AG]{M(Oxidation (M))|F};{I|L}YADVNK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGKQ{M(Oxidation (M))|F};[Y{I|L}]ADVNKQ{M(Oxidation (M))|F};[Y{I|L}]ADVGGK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVGGG[KA]{M(Oxidation (M))|F};[Y{I|L}]ADVNK[AG]{M(Oxidation (M))|F};[Y{I|L}]ADVNG[KA]{M(Oxidation (M))|F} 12.239;11.292;11.107;10.156;9.8631;9.1546;9.0274;8.7087;8.3149;7.9962 +;-;-;-;+;-;-;-;-;- + 1396 + NaN NaN 171795.5 NaN 6763 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9385 47.368 NaN 384320 35 0 23779 0.261 + 34263 YPDRIMNTF 9 79 586.7737544853795 1171.532956037559 2 586.7743530273438 MULTI HCD FTMS 0 0 0 9383 183102.921875 0.04076343777786485 35 -0.8986015319824219 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 67.08073823543168 0.010032840856489532 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 61.52 0 0 5.2513 5.2513 85.002 0 0 0 13.632812025128082 11.478174818886373 11.478174818886373 5.6246936830414995 0 1.5669015600442577 1.3979400086720375 0 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}[QA]Y 5.2513;4.7712;4.5142;4.4653;4.2812;4.0876;3.9852;3.7282;3.4952;3.1574 +;-;-;-;-;+;-;-;-;- + 1222 NaN NaN 140268.3 NaN 6764 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9386 47.371 NaN 196550 35 0 19832 0.262 + 2220 DIVKGDPEL 9 54 493.26362170605074 984.5126904789015 2 493.2640686035156 MULTI HCD FTMS 0 0 0 9383 87076.3125 0.5618608233806719 5 -0.12234878540039062 3 Unmodified _DIVKGDPEL_ ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion 33.4449034751529 0.0954363425218424 2 {NN|[MP]|[D{I|L}]|[EV]}VK[DG][EP]{I|L} 9 0 + 54.6 0 0 5.5458 5.5458 92.488 0 0 0 25.642492736872597 33.172874778693355 25.642492736872597 54.599549814380666 0 1.9247425010840047 2 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}VK[DG][EP]{I|L} 5.5458 + + 41 NaN NaN 101783.6 NaN 6765 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9387 47.375 NaN 209110 35 0 47197 0.261 + -1 FPTFCERCVF 10 48 435.86285220720015 1304.5667272218004 3 435.86309814453125 MULTI HCD FTMS 0 0 0 9383 71546.4140625 0.7138144485143787 -3 0.0830535888671875 4 Carbamidomethyl (C) _FPTFC(Carbamidomethyl (C))ERCVF_ REV__ENSG00000089159|ENST00000637617|PXN;REV__ENST00000323871.9_2_12:120650119-120654597:-|nuORF;REV__nc|ENSG00000089159|P49023-2|PXN;REV__nc|ENSG00000089159|P49023-3|PXN;REV__nc|ENSG00000089159|P49023-4|PXN;REV__nc|ENSG00000089159|P49023|PXN 7.101721422024254 0.4377131641736035 2 YP 2 -1 20.969 0 0 1.6074 0 0 0 1041.4253076114974 1041.4253076114974 4.515449934959719 0 0 0 0 0 0 0 0 YP 1.6074 - 20 + NaN NaN 116260 NaN 6766 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9388 47.378 NaN 189670 35 0 44225 0.261 + 938 AYEDRELQVE 10 44 417.86712847378976 1250.5795560215693 3 417.86712646484375 MULTI HCD FTMS 0 0 0 9383 35788.66015625 0.5615601790638303 -4 0.10944366455078125 5 Unmodified _AYEDRELQVE_ REV__ENSG00000153684|ENST00000526619|GOLGA8F;REV__ENSG00000183629|ENST00000525590|GOLGA8G;REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000181984|A6NN73|GOLGA8CP;REV__nc|ENSG00000290359|Q0D2H9|GOLGA8DP 8.745405648335112 0.42901288225909884 2 AY{M(Oxidation (M))|F} 3 -1 50.445 0 0 4.0338 0 0 0 866.4194606271724 866.4194606271724 36.46591250700361 0 0 0 0 0.4247425010840047 2 0 0 AY{M(Oxidation (M))|F} 4.0338 - 16 + NaN NaN 113405.5 NaN 6767 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9389 47.381 NaN 108090 35 0 19549 0.261 + 23951 RVCGAGRHRRS 11 41 627.8384857619939 NaN 0 627.8381958007812 PEAK HCD FTMS 0 0 0 9383 49267.1015625 0.8207583157856925 2 -0.056194305419921875 6 Unmodified _RVCGAGRHRRS_ REV__ENST00000477931.5_1_20:57464155-57485881:+|nuORF;REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF 12.872603262515298 0.30560427512798943 2 VCA 3 -1 28.188 0 0 2.2484 0 0 213.11512962770013 764.3911837213499 977.5063133490501 0 0 0 0 0 1.5 0 0 0 VCA 2.2484 - 32 + NaN NaN 102805.1 NaN 6768 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9390 47.385 NaN 281170 35 0 36542 0.262 -1 LPDQDEMDL 9 64 546.2315616376973 1090.4485703421944 2 546.231201171875 MULTI HCD FTMS 0 0 0 9383 66398.7109375 0.3804393221251838 -6 0.165924072265625 7 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 28.494509381512117 0.11816142465008336 2 DE{M(Oxidation (M))|F}D{I|L} 5 -1 46.67 0 0 4.2799 0 0 453.2215748517594 0 453.2215748517594 0 21.977437731477423 0 0 0 1.4247425010840047 0 0.3494850021680094 0 DE{M(Oxidation (M))|F}D{I|L} 4.2799 + + 135 NaN NaN 130385 NaN 6769 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9391 47.388 NaN 90929 35 0 14007 0.261 + 19653 NVINNAILR 9 42 513.8069997217511 1025.5994465103022 2 513.8074951171875 MULTI HCD FTMS 0 0 0 9383 31085.5390625 0.7758998403622654 3 -0.06952285766601562 8 Unmodified _NVINNAILR_ ENSG00000165029|ENST00000374736|ABCA1 14.838274106304384 0.23215694253501695 2 {[NV]|[RG]}{I|L} 3 6 20.458 0 0 1.9947 0 0 0 696.3809461043053 696.3809461043053 20.457574905606748 0 0 0 0 1 0 0 0 + {[NV]|[RG]}{I|L} 1.9947 + + 8 NaN NaN 92619.5 NaN 6770 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9392 47.391 NaN 100700 35 0 18505 0.261 + 9790 HYLDQLNHI 9 49 576.7931103538433 1151.5716677744865 2 576.7933959960938 MULTI HCD FTMS 0 0 0 9383 16814.9375 0.5708454568468782 1 -0.033176422119140625 9 Unmodified _HYLDQLNHI_ ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3 9.38312468134398 0.279288223203164 2 HY 2 7 39.196 0 0 3.4037 0 0 0 848.4248191895425 848.4248191895425 39.195925227640984 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 + HY 3.4037 + + 14 + NaN NaN 93680.4 NaN 6771 2619 9383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9394 47.396 NaN 472430 35 0 94129 0.327 + 15914 LPLTEHEL 8 63 476.2609071508243 950.5072613684487 2 476.2607421875 MULTI HCD FTMS 0 0 0 9393 205795.265625 0.5317578304789128 -3 0.08629989624023438 1 Unmodified _LPLTEHEL_ ENSG00000172578|ENST00000341319|KLHL6 97.07464715276575 0.03528778528112001 2 {I|L}P{I|L}TE 5 3 82.735 0 0 8.7043 0 0 0 394.17209802799067 394.17209802799067 64.81090231437648 0 0 0 0 1.6989700043360187 1.6989700043360187 1.2302046884880937 0 + {I|L}P{I|L}TE 8.7043 + + 334 + NaN NaN 160724.7 NaN 6772 2620 9393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9395 47.401 NaN 404000 35 0 110390 0.261 + 24037 RWPKKSAEFLL 11 45 458.9344726591946 1373.7815885777839 3 458.93463134765625 MULTI HCD FTMS 0 0 0 9393 168846.28125 0.9130038491584116 4 -0.08917236328125 2 Unmodified _RWPKKSAEFLL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 10.52747425323666 0.3653561834368464 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 7 42.735 0 0 3.1108 0 0 853.4895372762712 0 853.4895372762712 0 37.250547101681875 0 0 0 0.8494850021680094 0 0.3807196863200844 0 + E{M(Oxidation (M))|F}{I|L}{I|L} 3.1108 + + 31 NaN NaN 145579 NaN 6773 2620 9393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9396 47.404 NaN 264390 35 0 61001 0.261 -1 VSALARPLM 9 50 487.27762205643785 972.5406911796757 2 487.2782897949219 MULTI HCD FTMS 0 0 0 9393 93244.890625 0.8029839323099123 -2 0.0597381591796875 3 Oxidation (M) _VSALARPLM(Oxidation (M))_ ENST00000524964.1_1_11:126164366-126174190:-|nuORF 25.399314129420986 0.14091189997036632 2 [VS]A{I|L} 4 -1 51.682 0 0 5.3142 0 0 0 599.2966365984418 599.2966365984418 47.70303756120384 0 0 0 0 1.5 2 0.3494850021680094 0 [VS]A{I|L} 5.3142 + + 73 NaN NaN 120091.7 NaN 6774 2620 9393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9397 47.408 NaN 174110 35 0 16424 0.261 + 1359 AYPHNLMTF 9 52 555.2577148688594 1108.5008768045186 2 555.2578125 MULTI HCD FTMS 0 0 0 9393 67018.9375 0.04581912643855759 26 -0.6529045104980469 4 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 43.85829265575387 0.04763305254408404 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}[Y{I|L}]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 3 + 52.342 0 0 4.7219 4.7219 91.166 0 0 0 18.92544976785331 45.748031033778744 18.92544976785331 52.341824846900806 0 1.274227503252014 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}[Y{I|L}]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.7219 - 26 NaN NaN 102833.1 NaN 6775 2620 9393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9398 47.411 NaN 178310 35 0 40420 0.261 + 35176 YVIVVNDKIA 10 44 567.3316568197546 1132.648760706309 2 567.3193969726562 MULTI HCD FTMS 0 0 0 9393 6138.6650390625 0.42014544160068773 5 -0.10895538330078125 5 Unmodified _YVIVVNDKIA_ REV__ENSG00000185009|ENST00000355264|AP3M1 7.910154910731844 0.4334339971971892 2 [YV]{I|L} 3 -1 27.447 0 0 2.4233 0 0 0 754.4105487185858 754.4105487185858 13.915280875683749 0 0 0 0 0 1.6989700043360187 0 0 [YV]{I|L} 2.4233 + + 47 NaN NaN 110342.6 NaN 6776 2620 9393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9399 47.414 NaN 148430 35 0 27111 0.261 + 29936 VFFCLYLL 8 57 509.2765820180049 1016.5386111028098 2 509.2765808105469 MULTI HCD FTMS 0 0 0 9393 89906.78125 1 0 0 6 Unmodified _VFFCLYLL_ ENSG00000279111|ENST00000623167|OR10X1;OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant 11.114462752807354 0.5120171699125776 2 E{I|L}{I|L} 3 6 30.445 0 0 2.995 0 0 643.3168812482437 0 643.3168812482437 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 E{I|L}{I|L} 2.995 - 30 NaN NaN 104307.4 NaN 6777 2620 9393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9401 47.419 NaN 1038000 35 0 163470 0.327 + 34217 YPDPYGGEKL 10 86 569.7743929237647 1137.5342329143293 2 569.7745361328125 MULTI HCD FTMS 0 0 0 9400 685809.4375 0.825884570882445 4 -0.0859375 1 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 114.4966697963812 4.563610280778346E-05 2 [DP]YPYGGKE{I|L} 10 4 + 95.486 0 0 8.3941 8.3941 88.296 0 0 0 0.6246936830414995 0.6246936830414995 0.6246936830414995 0.6246936830414995 0 2.110924374808178 1.5228787452803376 1.055462187404089 0 [DP]YPYGGKE{I|L};YPKGGYPDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGEK{I|L};[DP]YPYGGEK{I|L};YPDPYGGEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYGGKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYNEK{I|L};[DP]YPYNKE{I|L};YPKNYPDE{I|L};[DP]YPYNEK{I|L} 8.3941;8.3392;8.2108;8.0359;7.9921;7.7561;7.6814;7.645;7.5901;7.5065 -;-;+;-;+;-;-;-;-;- + 2128 NaN NaN 257286 NaN 6778 2621 9400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9402 47.424 NaN 227380 35 0 14244 0.261 + 2695 DVHNAEFVL 9 68 522.2614078787661 1042.5082628243322 2 522.75341796875 MULTI HCD FTMS 0 0 0 9400 17528.91015625 0.10480472842656548 9 -0.19894027709960938 2 Unmodified _DVHNAEFVL_ ENSG00000157212|ENST00000404141|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;nc|ENSG00000157212|Q6ZW49-2|PAXIP1 13.90604991867851 0.24021115267848145 2 VV{I|L} 3 6 28.5 0 0 2.7338 0 0 713.2789173810562 0 713.2789173810562 0 19.291746928241125 0 0 0 0.3807196863200844 0 0 0 VV{I|L} 2.7338 - 104 NaN NaN 127314 NaN 6779 2621 9400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9403 47.428 NaN 59615 35 0 4178.9 0.261 -1 0 30 639.0415649414062 NaN 0 639.0415649414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101576.9 NaN 6780 2621 9400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9405 47.433 NaN 1581300 35 0 128970 0.327 + 6687 FPNKQGYVL 9 113 533.289789047833 1064.5650251624659 2 533.2901000976562 MULTI HCD FTMS 0 0 0 9404 638214.5 0.6947392684638999 -4 0.0960845947265625 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 107.99703571036002 0.003269392969029945 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 83.11 0 0 7.807 7.807 91.725 0 0 0 17.8457567454157 14.09256854528806 14.09256854528806 9.208187539523749 0 1.8494850021680094 1.5228787452803376 0.3807196863200844 1.078788659588897 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGVY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L} 7.807;6.942;6.942;6.3657;6.1306;6.0811;6.0697;5.6958;5.6036;5.2878 +;-;-;-;-;-;-;-;-;- + 4879 NaN NaN 329773.9 NaN 6781 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9406 47.437 NaN 988120 35 0 147850 0.261 + 18319 MPETTETVL 9 72 518.7470007342232 1035.4794485352463 2 518.7470703125 MULTI HCD FTMS 0 0 0 9404 379739.3125 0.5381983189067144 -15 0.37783050537109375 2 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 43.85829265575387 0.04763305254408404 2 ETV{I|L} 4 5 46.163 0 0 4.4582 0 0 575.2264271466812 0 575.2264271466812 0 37.57999250452839 0 0 0 1.0941876774005248 0 0.805462187404089 0 + ETV{I|L} 4.4582 + + 134 NaN NaN 241204.5 NaN 6782 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9407 47.441 NaN 136940 35 0 21394 0.262 -1 0 36 424.08158051091766 NaN 0 424.0818176269531 PEAK HCD FTMS 0 0 0 9404 96435.7421875 0.6368144150502254 44 -1.1949615478515625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98287.8 NaN 6783 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9408 47.444 NaN 232060 35 0 31319 0.261 + 18204 MPDLPEKL 8 65 479.7493489352233 957.4841449372466 2 479.7490539550781 MULTI HCD FTMS 0 0 0 9404 97230.8515625 0.43198406370187453 -19 0.4901008605957031 4 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 45.69961567697781 0.1577113171574352 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 0 + 43.294 0 0 4.5216 4.5216 87.553 0 0 0 20.334778045573074 11.52249673628745 11.52249673628745 11.588709367037282 0 1.5669015600442577 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L};{M(Oxidation (M))|F}PVE[EP]K{I|L} 4.5216;3.3113 +;- + 130 + NaN NaN 115036.2 NaN 6784 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9409 47.447 NaN 235050 35 0 73832 0.261 -1 TYIQKIFRM 9 64 405.88984808907486 1214.6477148674246 3 405.88983154296875 MULTI HCD FTMS 0 0 0 9404 60025.89453125 0.6954950367783505 -2 0.036346435546875 5 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 14.405379775768559 0.2358970535022398 2 TY 2 -1 45.217 0 0 3.7226 0 0 0 947.5132837283984 947.5132837283984 39.73197507588033 0 0 0 0 0.4247425010840047 2 0 0 TY 3.7226 + + 20 + NaN NaN 110224.8 NaN 6785 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9410 47.451 NaN 312130 35 0 37522 0.261 -1 IPHMDIEAL 9 57 527.7653667612398 1053.5161805892794 2 527.7657470703125 MULTI HCD FTMS 0 0 0 9404 101406 0.1157084957416316 -7 0.17896652221679688 6 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 26.88365393820708 0.12808753336095696 2 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 7 -1 42.963 0 0 4.0781 0 0 202.13188368965 0 202.13188368965 0 42.87478848885982 0 0 0 0.9247425010840047 0 0.5 0 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 4.0781 - 50 NaN NaN 129599.4 NaN 6786 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9411 47.454 NaN 87380 35 0 6629 0.261 -1 HFIAEHYMF 9 48 605.7708189559607 1209.5270849787214 2 605.7713012695312 MULTI HCD FTMS 0 0 0 9404 37579.84375 0.27261606735813904 14 -0.3433494567871094 7 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 32.30548876998284 0.10066689432505688 2 H{M(Oxidation (M))|F}{I|L} 3 -1 28.188 0 0 2.3305 0 0 0 809.2935885065061 809.2935885065061 -3.0102999566398125 0 -3.0102999566398125 0 0 0.5 0 0 0 H{M(Oxidation (M))|F}{I|L} 2.3305 + + 12 + NaN NaN 88670.3 NaN 6787 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9412 47.457 NaN 125740 35 0 8789.1 0.262 + 22938 QYTQALEKF 9 59 564.2903678922203 1126.5661828512405 2 564.2896118164062 MULTI HCD FTMS 0 0 0 9404 20877.095703125 0.19842553043614114 -5 0.12264633178710938 8 Unmodified _QYTQALEKF_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|3|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 41.95555342248728 0.056367691549927025 2 KQ[HQ]EK{M(Oxidation (M))|F} 7 5 43.346 0 0 3.8476 0 0 183.0891453529967 0 183.0891453529967 0 36.35615093082315 0 0 0 0.7742275032520141 0 0 0.3252574989159953 KQ[HQ]EK{M(Oxidation (M))|F} 3.8476 - 100 + NaN NaN 101753.9 NaN 6788 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9413 47.461 NaN 144930 35 0 30242 0.261 + -1 FMEWCYLL 8 46 589.2557815162331 1176.4970100992662 2 589.2560424804688 MULTI HCD FTMS 0 0 0 9404 54699.875 0.22164583424477752 10 -0.22484970092773438 9 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))EWC(Carbamidomethyl (C))YLL_ REV__ENST00000578529.5_1_18:259269-260310:-|nuORF;REV__ENST00000581116.1_1_18:259269-264031:-|nuORF 5.230669730166228 0.5342319408533849 2 {I|L}{I|L} 2 -1 24.776 0 0 2.1059 0 0 932.317393853678 0 932.317393853678 0 17.78659694992122 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 2.1059 + + 6 NaN NaN 107192.1 NaN 6789 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9414 47.464 NaN 88986 35 0 7033.7 0.262 -1 ADKMDMSL 8 47 492.70411491427404 983.3936768953481 2 492.70404052734375 MULTI HCD FTMS 0 0 0 9404 43485.8828125 0.5357316068089646 20 -0.5048255920410156 10 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))ADKM(Oxidation (M))DM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 26.268140514670165 0.400522237374671 2 {M(Oxidation (M))|F}S{I|L} 3 -1 34.693 0 0 3.5279 0 0 618.231737205275 0 618.231737205275 0 3.750612633917001 0 0 0 0.5 0 0.3494850021680094 0 {M(Oxidation (M))|F}S{I|L} 3.5279 + + 9 NaN NaN 97272.8 NaN 6790 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9415 47.467 NaN 60755 35 0 12464 0.261 + -1 QGMFVYLIPN 10 38 599.3005692348703 1196.5865855365405 2 599.301025390625 MULTI HCD FTMS 0 0 0 9404 37286.51953125 0.9938019013457845 1 -0.039745330810546875 11 Oxidation (M) _QGM(Oxidation (M))FVYLIPN_ REV__ENSG00000174600|ENST00000550402|CMKLR1;REV__nc|ENSG00000174600|Q99788-2|CMKLR1 1.4819007175156935 0.4674597685733628 2 {[QG]|[NA]}{M(Oxidation (M))|F} 3 -1 7.4473 0 0 0.62238 0 0 0 861.4544161432249 861.4544161432249 7.068671379276347 0 0 0 0 0 0 0 0 {[QG]|[NA]}{M(Oxidation (M))|F} 0.62238 + + 2 + NaN NaN 97966.5 NaN 6791 2622 9404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9417 47.472 NaN 2292700 35 0 249530 0.327 + 9780 HYKPTPLYF 9 112 583.3055525579356 1164.596552182671 2 583.3059692382812 MULTI HCD FTMS 0 0 0 9416 1428943.875 1 0 0 1 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 85.64151623876279 0.004640175941193596 2 HYK[TP]P{I|L}Y{M(Oxidation (M))|F} 9 0 + 64.341 0 0 5.5248 5.5248 84.296 0 0 0 2.7333755056045987 2.7333755056045987 2.7333755056045987 2.7333755056045987 0 2.048455006504028 1.6989700043360187 0.5774509799928715 0 + + HYK[TP]P{I|L}Y{M(Oxidation (M))|F};[{I|L}P][TP]KYHY{M(Oxidation (M))|F};[TP][HK]YP{I|L}Y{M(Oxidation (M))|F};[{I|L}P][TP]KYH{M(Oxidation (M))|F}Y;[{I|L}P]WAA{[QG]|[NA]}{I|L}Y{M(Oxidation (M))|F};[{I|L}P]Y[HK][TP]Y{M(Oxidation (M))|F};[{I|L}P][TP]KYYH{M(Oxidation (M))|F};{[WN]|[YH]}KY[TP]P{I|L}{M(Oxidation (M))|F};[{I|L}P][TP]{[WN]|[YH]}KY{M(Oxidation (M))|F};[TP][{I|L}P]KYHY{M(Oxidation (M))|F} 5.5248;5.2901;4.2375;4.0103;3.8111;3.7676;3.6751;3.5919;3.5531;3.3142 +;-;-;-;-;-;-;-;-;- + 2188 + NaN NaN 434596.3 NaN 6792 2623 9416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9418 47.477 NaN 140710 35 0 26603 0.261 + 10022 IEWGNNPMEI 10 44 601.7791605172606 1201.5437681013211 2 601.7794189453125 MULTI HCD FTMS 0 0 0 9416 57264.46484375 0.30483340412986515 19 -0.46508026123046875 2 Unmodified _IEWGNNPMEI_ ENSG00000171246|ENST00000306773|NPTX1 13.042465956692817 0.38911719078024076 2 NVE{I|L} 4 7 38.488 0 0 3.2032 0 0 728.2950916974625 0 728.2950916974625 0 33.00312209084183 0 0 0 0 0 0 0.805462187404089 NVE{I|L} 3.2032 - 68 NaN NaN 100936 NaN 6793 2623 9416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9419 47.48 NaN 349180 35 0 70278 0.261 -1 0 42 610.1817052753528 609.1744288087527 1 610.1842651367188 MULTI HCD FTMS 0 0 0 9416 78914.90625 0.7511224330603959 37 -0.9672355651855469 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 134382.4 NaN 6794 2623 9416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9421 47.485 NaN 203330 35 0 17342 0.327 + 35439 YYEKLHTYF 9 53 421.8731201589613 1262.5975310770839 3 421.8734130859375 MULTI HCD FTMS 0 0 0 9420 70443.3125 0.05669589693405639 16 -0.39911651611328125 1 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 20.41453444215458 0.18397929046831515 2 YY 2 7 45.217 0 0 3.5812 0 0 0 933.4462757312174 933.4462757312174 28.226825097560422 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5812 + + 8 + NaN NaN 118041.8 NaN 6795 2624 9420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9422 47.49 NaN 156820 35 0 12886 0.261 -1 YITGKQLKM 9 62 549.3031543215587 NaN 0 549.28466796875 PEAK HCD FTMS 0 0 0 9420 14863.7294921875 0.25137804525738583 -4 0.08917236328125 2 Oxidation (M) _YITGKQLKM(Oxidation (M))_ ENST00000562527.5_2_16:10481038-10481098:+|nuORF 7.910154910731844 0.25691533546754686 2 ADR 3 -1 14.693 0 0 1.3399 0 0 276.1844379465736 475.23168618192693 751.4161241285005 0 0 0 0 0 0 0 0 0 ADR 1.3399 - 125 + NaN NaN 105171.2 NaN 6796 2624 9420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9423 47.494 NaN 139650 35 0 9508.8 0.261 + 27323 SYQRAFNEF 9 49 581.2693635144044 1160.5241740956087 2 581.2700805664062 MULTI HCD FTMS 0 0 0 9420 48764.15234375 0.2816988215589418 8 -0.17202377319335938 3 Unmodified _SYQRAFNEF_ ENSG00000185215|ENST00000560869|TNFAIP2 16.565877749689598 0.21723083036893404 2 {M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 4 5 30.165 0 0 2.5993 0 0 605.2906361310562 0 605.2906361310562 0 7.946537861557985 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 2.5993 + + 95 NaN NaN 107896.9 NaN 6797 2624 9420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9424 47.497 NaN 92377 35 0 16251 0.261 -1 EQQLCQKVF 9 45 590.2951195906742 1178.5756862481483 2 590.2950439453125 MULTI HCD FTMS 0 0 0 9420 32417.109375 0.5875637237503603 1 -0.01978302001953125 4 Carbamidomethyl (C) _EQQLC(Carbamidomethyl (C))QKVF_ ZFP42|p.S107C|1|0.3|ENSG00000179059|chr4:188003127-188003127|C/G|missense_variant 6.2057823575117 0.30397260197431997 2 {I|L} 1 -1 6.9897 0 0 0.59306 0 0 132.17284746639308 930.2972506158811 1062.4700980822743 0 0 0 0 0 0 0 0 0 {I|L} 0.59306 + + 1 + NaN NaN 92715.9 NaN 6798 2624 9420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9425 47.5 NaN 102710 35 0 10747 0.261 + 10283 IKQKYAELK 9 45 560.8397896569764 1119.6650263807528 2 560.8399047851562 MULTI HCD FTMS 0 0 0 9420 16824.16015625 0.008584546843414259 35 -0.92449951171875 5 Unmodified _IKQKYAELK_ ENSG00000196878|ENST00000356082|LAMB3 5.731851221503515 0.3075653528928475 2 {I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S 4 7 16.198 0 0 1.4467 0 0 0 641.3773897760374 641.3773897760374 16.197887582883936 0 0 0 0 0 0 0 0 {I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S 1.4467 - 15 + NaN NaN 102279.8 NaN 6799 2624 9420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9427 47.505 NaN 388910 35 0 24782 0.327 + 34264 YPDRIMNTF 9 87 586.7735938013249 1171.5326346694496 2 586.7740478515625 MULTI HCD FTMS 0 0 0 9426 229591.203125 0.06797777199349124 -27 0.6898612976074219 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 107.5634045930896 0.0033401844687379516 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 76.037 0 0 6.4904 6.4904 85.918 0 0 0 47.055431996201364 11.42159058960253 11.42159058960253 2.658715643802765 0 2.7619229975844686 1.2218487496163564 1.2059771852360797 0.6549471895720984 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 6.4904;6.2634;5.7931;5.4774;5.4436;5.2204;5.1394;5.0071;4.7752;4.4344 +;+;-;-;-;-;-;-;-;- + 2674 + NaN NaN 144591.8 NaN 6800 2625 9426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9428 47.51 NaN 148850 35 0 23553 0.261 + 8779 HIFKHTTL 8 52 498.78494124431677 NaN 0 498.7718505859375 PEAK HCD FTMS 0 0 0 9426 5524.37890625 0.2098314505257912 -1 0.01978302001953125 2 Unmodified _HIFKHTTL_ REV__ENSG00000160352|ENST00000456283|ZNF714;REV__ENST00000601416.1_19:21281704-21301132:+|nuORF;REV__nc|ENSG00000160352|Q96N38-2|ZNF714;REV__nc|ENSG00000160352|Q96N38-3|ZNF714;REV__nc|ENSG00000160352|Q96N38|ZNF714 16.942295170755138 0.3865212393897457 2 N 1 -1 10.242 0 0 1.0288 0 0 458.3129111978148 420.1890963190063 878.5020075168211 0 0 0 0 0 0 0 0 0.3252574989159953 N 1.0288 - 23 + NaN NaN 110699.5 NaN 6801 2625 9426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9429 47.513 NaN 130510 35 0 37058 0.261 -1 KMNKWCEYF 9 40 435.86285220720015 1304.5667272218004 3 435.86309814453125 MULTI HCD FTMS 0 0 0 9426 48407.9765625 0.4829635914872363 3 -0.06940841674804688 3 Carbamidomethyl (C) _KMNKWC(Carbamidomethyl (C))EYF_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 7.101721422024254 0.29718071671418667 2 YP 2 -1 34.949 0 0 2.6789 0 0 0 1041.4279881482223 1041.4279881482223 9.731975075880328 0 0 0 0 0 1.3979400086720375 0 0 YP 2.6789 - 8 + NaN NaN 100029.6 NaN 6802 2625 9426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9430 47.517 NaN 73532 35 0 9278.6 0.261 + 12621 KVPPAINQF 9 47 507.2926073392508 NaN 0 507.2925720214844 PEAK HCD FTMS 0 0 0 9426 13762.21484375 0.40478376731988114 1 -0.0196990966796875 4 Unmodified _KVPPAINQF_ ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000480271.1_1_11:7805306-7805588:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF 6.723162845929126 0.26266733336404485 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94750.7 NaN 6803 2625 9426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9431 47.52 NaN 83633 35 0 5939.4 0.261 + 7088 FRELWRYHF 9 43 451.89961328011105 1352.6770104405332 3 451.8995361328125 MULTI HCD FTMS 0 0 0 9426 18081.62890625 0.1848177522259476 9 -0.21142578125 5 Unmodified _FRELWRYHF_ ENSG00000128607|ENST00000335420|KLHDC10;ENST00000495724.1_1_7:129756322-129757411:+|nuORF 8.155526934196011 0.2891920862272901 2 {M(Oxidation (M))|F} 1 8 20.485 0 0 1.5144 0 0 1187.5977085379925 0 1187.5977085379925 0 10.026975159433531 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.5144 + + 11 + NaN NaN 91456.3 NaN 6804 2625 9426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9433 47.525 NaN 509710 35 0 108620 0.326 + 15915 LPLTEHEL 8 70 476.2609071508243 950.5072613684487 2 476.2610168457031 MULTI HCD FTMS 0 0 0 9432 266542.90625 0.6887246755973289 3 -0.0699615478515625 1 Unmodified _LPLTEHEL_ ENSG00000172578|ENST00000341319|KLHL6 109.62928328672726 0.035128097911409736 2 [{I|L}P]{I|L}TEHE{I|L} 8 0 + 84.268 0 0 8.8655 8.8655 98.032 0 0 0 1.2200705902944833 62.293847850470726 1.2200705902944833 59.27028188162717 0 1.9247425010840047 1.6989700043360187 0.9436726795685342 0 + + [{I|L}P]{I|L}TEHE{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}T]PHE{I|L};[VP][NS]E[VP]P{I|L};[VP][NS]PDP{I|L}{I|L};[VP][NS]PD{I|L}P{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}T]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}T]{[YC]|[HE]}P{I|L} 8.8655;2.6299;1.8338;1.3881;1.2567;0.20567;0.074222 +;-;-;-;-;-;- + 422 NaN NaN 159051.1 NaN 6805 2626 9432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9434 47.529 NaN 146090 35 0 23436 0.261 + 30663 VPDSPENEL 9 59 500.23507398338484 998.4555950335697 2 500.2351379394531 MULTI HCD FTMS 0 0 0 9432 38322.83203125 0.42169830858085455 1 -0.016510009765625 2 Unmodified _VPDSPENEL_ ENSG00000132849|ENST00000642238|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;nc|ENSG00000132849|Q8NI35|PATJ 43.77239144664712 0.04802738721622131 2 C(Carbamidomethyl (C))S[EP]NE{I|L} 7 3 41.859 0 0 4.1924 0 0 151.1134968488297 0 151.1134968488297 0 35.45957314541119 0 0 0 1.1237125054200234 0 0.3494850021680094 0.3807196863200844 C(Carbamidomethyl (C))S[EP]NE{I|L} 4.1924 - 73 NaN NaN 106612 NaN 6806 2626 9432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9435 47.533 NaN 237920 35 0 75209 0.261 + 2214 DISPPIFRR 9 55 550.8140668690843 1099.6135808049685 2 550.8150024414062 MULTI HCD FTMS 0 0 0 9432 66804.890625 0.3903318682657002 -5 0.1056365966796875 3 Unmodified _DISPPIFRR_ ENSG00000155926|ENST00000338087|SLA;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-4|SLA;nc|ENSG00000155926|Q13239-5|SLA 39.94969957227396 0.06557568441294001 2 D{I|L}SP[{I|L}P]R{M(Oxidation (M))|F}R 9 2 + 78.906 0 0 7.1758 7.1758 95.776 0 0 0 57.82374100152431 16.478174818886373 16.478174818886373 78.90600959017256 0 0.3807196863200844 1.3979400086720375 0.4247425010840047 0.9247425010840047 D{I|L}SP[{I|L}P]R{M(Oxidation (M))|F}R 7.1758 - 116 + NaN NaN 122194.8 NaN 6807 2626 9432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9436 47.536 NaN 180750 35 0 30753 0.262 + 7103 FRLPVFNWTAL 11 46 455.2544967760967 1362.74166092849 3 455.2583923339844 MULTI HCD FTMS 0 0 0 9432 26005.298828125 0.22382509548451587 -9 0.21495437622070312 4 Unmodified _FRLPVFNWTAL_ ENSG00000161791|ENST00000335154|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 2.6312355333042263 0.4073809613003177 2 {I|L}[QP][WE]Y{I|L} 7 7 27.491 0 0 2.0173 0 0 415.25292332998595 0 415.25292332998595 0 22.00659450546418 0 0 0 0.4247425010840047 0 0 0.4247425010840047 {I|L}[QP][WE]Y{I|L} 2.0173 - 12 NaN NaN 112813.5 NaN 6808 2626 9432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9438 47.541 NaN 663260 35 0 52071 0.327 + 31691 VYKTIMEQF 9 93 587.7939337491523 1173.5733145651045 2 588.3082275390625 MULTI HCD FTMS 0 0 0 9437 22109.84765625 0.32344764734582593 7 -0.1752166748046875 1 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ BAIAP2-TBCD|1|fusion;ENSG00000175866|ENST00000428708|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2 41.95555342248728 0.056367691549927025 2 [YK]TK{I|L}{M(Oxidation (M))|F}CY 8 5 52.266 0 0 4.4535 0 0 0 124.04332923570715 124.04332923570715 0.6095208820550795 0 0 0 0 0 0 1.6184151806525389 0.8737125054200234 [YK]TK{I|L}{M(Oxidation (M))|F}CY 4.4535 - 2492 NaN NaN 183954.6 NaN 6809 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9439 47.546 NaN 428650 35 0 60736 0.261 + 15553 LPDQDEMDL 9 76 546.2315616376973 1090.4485703421944 2 546.2318115234375 MULTI HCD FTMS 0 0 0 9437 150231.859375 0.8607713302752088 2 -0.0534515380859375 2 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 47.594388314883695 0.03493607795751234 2 {NN|[MP]|[D{I|L}]|[EV]}PQDE{M(Oxidation (M))|F}D{I|L} 9 2 + 86.014 0 0 7.8879 7.8879 91.869 0 0 0 20.87128018967597 71.0652141247425 20.87128018967597 9.208187539523749 0 1.5 1.5228787452803376 0.5941876774005248 0 {NN|[MP]|[D{I|L}]|[EV]}PQDE{M(Oxidation (M))|F}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[AG]DE{M(Oxidation (M))|F}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}PQDEE[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}P[AG]DEE[{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YQ]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 7.8879;7.0435;4.666;3.8216;1.8084;1.605 -;-;-;-;-;- 216 NaN NaN 158781.3 NaN 6810 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9440 47.55 NaN 325200 35 0 84114 0.262 + 24038 RWPKKSAEFLL 11 46 458.9344726591946 1373.7815885777839 3 458.9346008300781 MULTI HCD FTMS 0 0 0 9437 102426.9453125 0.5538540418866976 11 -0.29387664794921875 3 Unmodified _RWPKKSAEFLL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 7.846045518447754 0.3845105762037768 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 31.198 0 0 2.2709 0 0 982.5337427348646 0 982.5337427348646 0 24.20818753952375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.2709 + + 20 NaN NaN 134061 NaN 6811 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9441 47.553 NaN 138140 35 0 7476.5 0.261 + 2162 DHWFWPERDWF 11 64 540.9048849444321 1619.6928254334962 3 541.2530517578125 MULTI HCD FTMS 0 0 0 9437 16921.564453125 0.650430163396551 -1 0.016510009765625 4 Unmodified _DHWFWPERDWF_ REV__TLE6|p.K150R|1|0.17|ENSG00000104953|chr19:2987146-2987146|A/G|missense_variant 2.4347853303010236 0.4082425251555256 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.2647 0 0 1454.613706636424 0 1454.613706636424 0 13.010299956639813 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.2647 + + 31 + NaN NaN 109530.6 NaN 6812 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9442 47.556 NaN 154790 35 0 10045 0.261 + 1360 AYPHNLMTF 9 48 555.2577148688594 1108.5008768045186 2 555.2579345703125 MULTI HCD FTMS 0 0 0 9437 59202.4609375 0.04047520214967716 33 -0.898162841796875 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 56.17704186161178 0.022929533404884107 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 6 34.041 0 0 3.0709 0 0 695.3411732404312 0 695.3411732404312 0 32.05136871872881 0 0 0 0.8807196863200843 0 0.3807196863200844 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.0709 + + 31 NaN NaN 106226.9 NaN 6813 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9443 47.56 NaN 136720 35 0 32426 0.261 + 22085 QHQLTDIL 8 33 484.2639301573568 966.5133073815136 2 484.2642822265625 MULTI HCD FTMS 0 0 0 9437 43773.30078125 0.6924477908121419 2 -0.0534515380859375 6 Unmodified _QHQLTDIL_ REV__ENSG00000137831|ENST00000322954|UACA;REV__nc|ENSG00000137831|Q9BZF9-2|UACA 11.640296217721598 0.50814828952472 2 {I|L}{I|L} 2 -1 25.969 0 0 2.6869 0 0 722.3338872564306 0 722.3338872564306 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6869 + + 6 NaN NaN 100654.9 NaN 6814 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9444 47.563 NaN 116340 35 0 6969.6 0.261 + 8954 HPDSIEYGL 9 48 515.745506391897 1029.476459850594 2 515.7454223632812 MULTI HCD FTMS 0 0 0 9437 27769.08984375 0.6635283674786595 1 -0.033199310302734375 7 Unmodified _HPDSIEYGL_ ENSG00000147099|ENST00000373573|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8 7.289230182591677 0.29575926068275815 2 YG{I|L} 3 6 31.198 0 0 3.0305 0 0 678.296195434989 0 678.296195434989 0 24.20818753952375 0 0 0 0.5 0 0 0 + YG{I|L} 3.0305 + + 24 NaN NaN 93230.8 NaN 6815 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9445 47.566 NaN 112690 35 0 15454 0.261 + 30345 VLFGWLAAP 9 54 487.27762205643785 972.5406911796757 2 487.2784423828125 MULTI HCD FTMS 0 0 0 9437 47135.91015625 0.4059136992555441 5 -0.11603164672851562 8 Unmodified _VLFGWLAAP_ REV__ENST00000445792.7_1_X:305849-322301:-|nuORF 20.871210003555333 0.18003371494288972 2 [VS]A{I|L} 4 -1 45.674 0 0 4.6964 0 0 0 599.2971975520795 599.2971975520795 31.070006276765483 0 0 0 0 1.4247425010840047 1.5228787452803376 0 0 [VS]A{I|L} 4.6964 - 49 + NaN NaN 96918.3 NaN 6816 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9446 47.57 NaN 155440 35 0 15653 0.261 + 4310 EVSDVEIITR 10 51 580.8115008166866 1159.608448700173 2 580.8119506835938 MULTI HCD FTMS 0 0 0 9437 70625.15625 1 0 0 9 Unmodified _EVSDVEIITR_ ENSG00000198000|ENST00000442668|NOL8;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8 19.625955294349634 0.3275374527965692 2 {NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}VE{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 32.637 0 0 2.8145 2.8145 88.492 0 0 0 4.220449851406514 6.121506059964545 4.220449851406514 32.63682493045401 0 0.7742275032520141 0 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}VE{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.8145 + + 89 + NaN NaN 113256.4 NaN 6817 2627 9437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9448 47.575 NaN 1478200 35 0 138810 0.326 + 6688 FPNKQGYVL 9 100 533.289789047833 1064.5650251624659 2 533.2902221679688 MULTI HCD FTMS 0 0 0 9447 795199.0625 0.865627488821437 2 -0.0435943603515625 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 96.28474662873226 0.004361282420133734 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 83.677 0 0 7.8602 7.8602 92.488 0 0 0 19.45006620598795 14.092568545288074 14.092568545288074 9.208187539523763 0 2.0451140161145327 1.5228787452803376 0.5649093276264391 0.6307196863200843 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGVY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L} 7.8602;6.9952;6.9952;6.5681;6.1344;6.0332;5.9114;5.7484;5.5467;5.5376 +;-;-;-;-;-;-;-;-;- + 4045 NaN NaN 305735.7 NaN 6818 2628 9447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9449 47.579 NaN 254100 35 0 32482 0.261 + 34218 YPDPYGGEKL 10 59 569.7743929237647 1137.5342329143293 2 569.7744750976562 MULTI HCD FTMS 0 0 0 9447 135657.75 0.16336555975963513 11 -0.2803077697753906 2 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 49.52724829834842 0.07950882623896251 2 YPKN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DE{I|L} 9 5 + 64.939 0 0 5.7087 5.7087 86.912 0 0 0 46.18317473533317 3.582720884511801 3.582720884511801 8.296896906561031 0 0.6307196863200843 2 0.3252574989159953 0.3494850021680094 YPKN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NKE{I|L};YPKGG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NEK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGEK{I|L};[DP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[DP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGKE{I|L};[DP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NEK{I|L} 5.7087;4.9794;4.8993;4.847;4.1699;4.0376;3.4398;2.758;2.6303;2.4945 -;-;-;-;-;+;-;-;-;- + 220 + NaN NaN 126957.8 NaN 6819 2628 9447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9450 47.583 NaN 540200 35 0 39435 0.261 -1 MVEELEKAL 9 90 539.2780863135091 1076.5416196938181 2 539.7927856445312 MULTI HCD FTMS 0 0 0 9447 24146.875 0.4852774852866702 -1 0.033199310302734375 3 Oxidation (M) _M(Oxidation (M))VEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 37.07464296494664 0.07877380486334713 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 8 -1 50.883 0 0 4.7266 0 0 0 127.04274038935354 127.04274038935354 10.599396087305522 0 0 0 0 0 2 0.2742275032520141 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 4.7266 - 1309 NaN NaN 174901.3 NaN 6820 2628 9447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9451 47.587 NaN 245690 35 0 38644 0.261 + 12349 KNGNLKVH 8 40 455.2679141208901 NaN 0 455.25799560546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _KNGNLKVH_ tr|U7SUI5|U7SUI5_FUSNUTIGR01212familyradicalSAMproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01174PE=4SV=1 5.230669730166228 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.76935 0 0 380.1832923452917 412.23138428834534 792.4146766336371 0 0 0 0 0 0 0 0 0 + {I|L} 0.76935 + + 12 + NaN NaN 123559.2 NaN 6821 2628 9447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9452 47.59 NaN 71916 35 0 7199.2 0.261 + -1 ARYRDPICRF 10 56 451.89961328011105 1352.6770104405332 3 452.2341613769531 MULTI HCD FTMS 0 0 0 9447 8852.41015625 0.12212956976029436 11 -0.2803077697753906 5 Carbamidomethyl (C) _ARYRDPIC(Carbamidomethyl (C))RF_ REV__ENSG00000167941|ENST00000301691|SOST;REV__nc|ENSG00000167941|Q9BQB4-2|SOST 8.97624648632007 0.42715123575657504 2 {M(Oxidation (M))|F} 1 -1 17.012 0 0 1.2576 0 0 1187.5982578543988 0 1187.5982578543988 0 17.01163485412895 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.2576 + + 3 + NaN NaN 90689.8 NaN 6822 2628 9447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9454 47.595 NaN 1564500 35 0 189360 0.327 + 10538 IPHMDIEAL 9 103 527.7653667612398 1053.5161805892794 2 527.7657470703125 MULTI HCD FTMS 0 0 0 9453 876392 1 0 0 1 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 61.357469665136826 0.01568246967499496 2 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 7 6 49.271 0 0 4.6768 0 0 202.13174636054845 0 202.13174636054845 0 18.798049139643503 0 0 0 0.8807196863200843 0 1.1747425010840047 0 E{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}{I|L} 4.6768 - 1441 NaN NaN 325554.8 NaN 6823 2629 9453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9455 47.599 NaN 254050 35 0 22245 0.261 + 18205 MPDLPEKL 8 62 479.7493489352233 957.4841449372466 2 479.7493896484375 MULTI HCD FTMS 0 0 0 9453 141225.953125 0.6274485942550077 -12 0.2849159240722656 2 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 45.69961567697781 0.1577113171574352 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 0 + 48.193 0 0 5.0333 5.0333 91.521 0 0 0 22.22357194224834 11.962724883926654 11.962724883926654 48.192672072328904 0 1.579689690656103 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 5.0333 + + 85 + NaN NaN 130589 NaN 6824 2629 9453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9456 47.603 NaN 334180 35 0 59275 0.261 + 4162 ETPQVAVIVR 10 59 556.326908086757 1110.639263240314 2 556.3273315429688 MULTI HCD FTMS 0 0 0 9453 110414.8046875 0.8804791673350841 -1 0.020252227783203125 3 Unmodified _ETPQVAVIVR_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000493299.1_1_3:184038318-184039070:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 57.24910588100465 0.05142613675551719 2 {[ET]|[MV]}[QP]{[VA]|[{I|L}G]}V{I|L}VR 10 0 + 47.835 0 0 4.307 4.307 90.471 0 0 0 20.549537427956107 13.84520906668314 13.84520906668314 47.834778045573074 0 1.8169015600442577 0 0 0 + + {[ET]|[MV]}[QP]{[VA]|[{I|L}G]}V{I|L}VR 4.307 + + 91 + NaN NaN 138628.5 NaN 6825 2629 9453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9457 47.607 NaN 88674 35 0 5681.4 0.261 + 22939 QYTQALEKF 9 40 564.2903678922203 1126.5661828512405 2 564.2905883789062 MULTI HCD FTMS 0 0 0 9453 58813.078125 0.558986575023867 2 -0.04297637939453125 4 Unmodified _QYTQALEKF_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|3|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 27.628801355627647 0.12213550946336599 2 KE[YT]EK{M(Oxidation (M))|F} 7 5 39.469 0 0 3.5034 0 0 183.0853611733092 0 183.0853611733092 0 25.65630099269626 0 0 0 0.3494850021680094 0 0.4247425010840047 0 KE[YT]EK{M(Oxidation (M))|F} 3.5034 - 66 + NaN NaN 96110.3 NaN 6826 2629 9453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9458 47.61 NaN 430640 35 0 42744 0.261 + 8351 GYIESVQHI 9 70 523.2692699548174 1044.5239869764348 2 523.268798828125 MULTI HCD FTMS 0 0 0 9453 120949.3671875 0.23388346047811726 -5 0.10944366455078125 5 Unmodified _GYIESVQHI_ ENSG00000125871|ENST00000377710|MGME1 110.6747026088012 0.0028322563155251486 2 [YG]{I|L}ESVQH{I|L} 9 0 + 102.63 0 0 9.8255 9.8255 94.046 0 0 0 0.30008452963798504 0.30008452963798504 0.30008452963798504 9.208187539523749 0 2.8494850021680094 2 0.7302046884880937 0 + + [YG]{I|L}ESVQH{I|L};[YG]{I|L}ESV[AG]H{I|L};[YG]{I|L}TDVQH{I|L};[YG]{I|L}TDV[AG]H{I|L};[YG]{I|L}ED[KA]H{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SVQH{I|L};[YG]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{[ES]|[DT]|[{I|L}C]}H{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SV[AG]H{I|L};{[QN]|[E{I|L}]|[KN]}[RP]SEP{[MS]|[{M(Oxidation (M))|F}A]};{[QN]|[E{I|L}]|[KN]}[YG]D[KA]H{I|L} 9.8255;8.9439;8.7704;7.8888;6.8564;5.1582;4.4712;4.2767;2.9143;2.1891 +;-;-;-;-;-;-;-;-;- + 584 NaN NaN 154475.1 NaN 6827 2629 9453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9459 47.613 NaN 66826 35 0 15243 0.261 + -1 QQMQMEGKI 9 31 575.7652833665795 1149.516013799959 2 575.7656860351562 MULTI HCD FTMS 0 0 0 9453 13725.8251953125 0.6353981053486614 1 -0.023342132568359375 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))QQMQM(Oxidation (M))EGKI_ REV__RPF2|p.G39Efs*7|1|0.11|ENSG00000197498|chr6:110985094-110985094|G/-|frameshift_variant 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100250.9 NaN 6828 2629 9453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9461 47.618 NaN 1305800 35 0 136930 0.327 + 9781 HYKPTPLYF 9 101 583.3055525579356 1164.596552182671 2 583.3060302734375 MULTI HCD FTMS 0 0 0 9460 735829.875 0.5149466594690432 7 -0.19078445434570312 1 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 57.72198328787511 0.020768266150574023 2 HYK[TP]P{I|L}Y{M(Oxidation (M))|F} 9 0 + 55.326 0 0 4.7507 4.7507 82.446 0 0 0 1.2308153402814526 1.2308153402814526 1.2308153402814526 1.2308153402814526 0 2.0682503180159344 1.6989700043360187 0.2302046884880938 0 + + HYK[TP]P{I|L}Y{M(Oxidation (M))|F};[{I|L}P][TP]KYHY{M(Oxidation (M))|F};HY[TP]KP{I|L}Y{M(Oxidation (M))|F};[TP][HK]YP{I|L}Y{M(Oxidation (M))|F};[{I|L}P]{[HG]|PP}{M(Oxidation (M))|F}[TA]{I|L}Y{M(Oxidation (M))|F};[{I|L}P][TP]KYH{M(Oxidation (M))|F}Y;HY[TP]{I|L}[KP]Y{M(Oxidation (M))|F};[{I|L}P][TP]KYYH{M(Oxidation (M))|F};{[WN]|[YH]}KY[TP]{I|L}P{M(Oxidation (M))|F};{[WN]|[YH]}KY[{I|L}P]TP{M(Oxidation (M))|F} 4.7507;4.645;4.4922;3.9999;3.9813;3.4609;3.3581;3.328;3.1308;2.9944 +;-;-;-;-;-;-;-;-;- + 1142 + NaN NaN 282961.4 NaN 6829 2630 9460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9462 47.623 NaN 1057700 35 0 144100 0.261 -1 MPETTETVL 9 75 518.7470007342232 1035.4794485352463 2 518.747314453125 MULTI HCD FTMS 0 0 0 9460 483639.96875 0.6854550202445683 -7 0.14586639404296875 2 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 32.30548876998284 0.10066689432505688 2 ETV{I|L} 4 -1 44.17 0 0 4.2657 0 0 575.2255726544937 0 575.2255726544937 0 31.695925227640984 0 0 0 1.0994850021680094 0 0.7742275032520141 0 ETV{I|L} 4.2657 + + 46 NaN NaN 242263 NaN 6830 2630 9460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9463 47.626 NaN 142690 35 0 10444 0.262 + 35440 YYEKLHTYF 9 55 421.8731201589613 1262.5975310770839 3 421.8736572265625 MULTI HCD FTMS 0 0 0 9460 60376.7734375 0.04859390057819007 22 -0.5941963195800781 3 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 20.41453444215458 0.18397929046831515 2 YY 2 7 44.776 0 0 3.5464 0 0 0 933.4480397938706 933.4480397938706 27.302046884880937 0 0 0 0 0.3807196863200844 2 0 0 + YY 3.5464 + + 11 + NaN NaN 106180.3 NaN 6831 2630 9460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9464 47.63 NaN 89546 35 0 16958 0.261 + -1 MFTRFNEEI 9 35 601.7791605172606 1201.5437681013211 2 601.780517578125 MULTI HCD FTMS 0 0 0 9460 39720.42578125 0.2114419935194349 26 -0.7027664184570312 4 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 13.042465956692817 0.2476723265019929 2 VE{I|L} 3 -1 30.445 0 0 2.5338 0 0 842.3379994123062 0 842.3379994123062 0 24.960762528683702 0 0 0 0.4247425010840047 0 0 0 VE{I|L} 2.5338 - 10 NaN NaN 100228.4 NaN 6832 2630 9460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9465 47.633 NaN 114370 35 0 55310 0.262 -1 0 38 512.3553706432646 511.3480941766646 1 512.3554077148438 MULTI HCD FTMS 0 0 0 9460 43819.328125 0.5294561308980132 -4 0.09330368041992188 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94572.8 NaN 6833 2630 9460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9467 47.638 NaN 820320 35 0 94181 0.327 + 563 APEEHPVLL 9 91 502.77415335255756 1003.5337537719151 2 502.7742919921875 MULTI HCD FTMS 0 0 0 9466 303397.84375 0.003248673663871203 57 -1.6152915954589844 1 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 92.8221339359638 0.0044520161739443126 2 APEEH[VP]{I|L}{I|L} 9 0 + 52.928 0 0 5.2742 5.2742 86.439 0 0 0 9.081327402017521 9.081327402017521 9.081327402017521 9.081327402017521 0 2.4005149978319906 0 0.9291746928241126 0 + + APEEH[VP]{I|L}{I|L};[PA]EEH[VP]{I|L}{I|L};[VP]DDH[VP]{I|L}{I|L} 5.2742;4.3692;3.9332 +;+;- + 192 + NaN NaN 206625.6 NaN 6834 2631 9466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9468 47.642 NaN 185730 35 0 12804 0.261 + 26226 SPVKISEI 8 60 436.7584141276798 871.5022753221597 2 436.75848388671875 MULTI HCD FTMS 0 0 0 9466 53439.64453125 0.6792549368879317 1 -0.019603729248046875 2 Unmodified _SPVKISEI_ ENSG00000168994|ENST00000380283|PXDC1 21.74664581756881 0.4337896562907935 2 SPP{I|L}{M(Oxidation (M))|F}RR 7 5 + 82.798 0 0 9.5006 9.5006 96 0 0 0 31.804782212094338 15.255762612236907 15.255762612236907 15.255762612236907 0 1.055462187404089 1.6989700043360187 0 1.079689690656103 SPP{I|L}{M(Oxidation (M))|F}RR;SPP{I|L}RR{M(Oxidation (M))|F};SP[R{I|L}][RP]{M(Oxidation (M))|F} 9.5006;7.75;4.6171 -;-;- 73 + NaN NaN 118145.7 NaN 6835 2631 9466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9469 47.646 NaN 63401 35 0 4764.1 0.261 -1 HFIAEHYMF 9 38 605.7705405955054 1209.5265282578107 2 605.7717895507812 MULTI HCD FTMS 0 0 0 9466 15486.01171875 0.10030984978087498 -19 0.46068572998046875 3 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 19.256988751693697 0.19398022840297344 2 H{M(Oxidation (M))|F}{I|L} 3 -1 28.188 0 0 2.3305 0 0 0 809.2929781549436 809.2929781549436 1.9897000433601875 0 0 0 0 0.5 0 0 0 H{M(Oxidation (M))|F}{I|L} 2.3305 + + 10 + NaN NaN 97599.9 NaN 6836 2631 9466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9470 47.649 NaN 115390 35 0 8798.8 0.262 + 14028 KYTRLQSD 8 50 505.76852489892445 1009.5224968646489 2 505.7687072753906 MULTI HCD FTMS 0 0 0 9466 21759.728515625 0.6509990904345101 4 -0.115020751953125 4 Unmodified _KYTRLQSD_ ENST00000517480.1_1_5:159849319-159849478:+|nuORF 2.9952420565917617 0.5375485184628224 2 KYT 3 5 25.956 0 0 2.5711 0 0 0 614.2987764947874 614.2987764947874 25.955612550363796 0 0 0 0 0.3252574989159953 0 0 0 + KYT 2.5711 + + 5 + NaN NaN 105187.3 NaN 6837 2631 9466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9471 47.653 NaN 62018 35 0 4546.3 0.261 + 22845 QYLTEHFFI 9 37 599.3005692348703 1196.5865855365405 2 599.3016967773438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QYLTEHFFI_ REV__ENSG00000109107|ENST00000226253|ALDOC;REV__ENST00000582381.1_1_17:26902119-26903857:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97274.8 NaN 6838 2631 9466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9473 47.657 NaN 405870 35 0 31509 0.327 + 31480 VYERELQTF 9 59 592.8009162423195 1183.587279551439 2 592.8015747070312 MULTI HCD FTMS 0 0 0 9472 126137.5234375 0.9460946589047416 2 -0.059185028076171875 1 Unmodified _VYERELQTF_ ENSG00000203791|ENST00000368836|EEF1AKMT2 49.52724829834842 0.03223213920720493 2 [YV]ERE{I|L}QT{M(Oxidation (M))|F} 9 0 + 72.017 0 0 6.0847 6.0847 88.68 0 0 0 22.068715476696354 34.97810928665125 22.068715476696354 9.208187539523749 0 1.6677353201839438 1.5228787452803376 0.4247425010840047 0 + + [YV]ERE{I|L}QT{M(Oxidation (M))|F};[YV]ERE{I|L}[AG]T{M(Oxidation (M))|F};[YV]ERE{I|L}N[YV];[YV]ERE{I|L}GG[YV];[YV]N[RP]HH[YV] 6.0847;5.3067;3.5704;2.7924;1.1018 +;-;-;-;- + 242 NaN NaN 146792.9 NaN 6839 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9474 47.662 NaN 446190 35 0 60136 0.261 + 24862 RYQDIIHSI 9 69 572.8086998480891 1143.602846762978 2 572.80859375 MULTI HCD FTMS 0 0 0 9472 125995.078125 0.11769822153141878 -5 0.11603164672851562 2 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 47.594388314883695 0.03493607795751234 2 [YR]QD{I|L}{I|L}HS{I|L} 9 0 + 49.415 0 0 4.321 4.321 85.975 0 0 0 2.120215259895417 32.97492166357429 2.120215259895417 9.208187539523749 0 1.5484550065040281 0 0.3807196863200844 0 + + [YR]QD{I|L}{I|L}HS{I|L};[YR][AG]D{I|L}{I|L}HS{I|L};[H{I|L}][DV][NP]{I|L}HS{I|L};[H{I|L}]{I|L}{[HG]|PP}[QT]PE{I|L} 4.321;3.5158;2.6453;1.028 +;-;-;- + 247 NaN NaN 157593.7 NaN 6840 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9475 47.665 NaN 150790 35 0 49879 0.264 -1 TYIQKIFRM 9 37 405.88984808907486 1214.6477148674246 3 405.8898010253906 MULTI HCD FTMS 0 0 0 9472 40411.3125 0.4682290450301704 8 -0.22709274291992188 3 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 19.361941925380144 0.1930734562688509 2 TY 2 -1 45.217 0 0 3.7226 0 0 0 947.51387668812 947.51387668812 41.237125054200234 0 0 0 0 0.4247425010840047 2 0 0 TY 3.7226 + + 10 + NaN NaN 99997.3 NaN 6841 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9476 47.669 NaN 255980 35 0 22636 0.261 -1 MDLALWMF 8 70 529.7382042527884 1057.4618555723766 2 529.7382202148438 MULTI HCD FTMS 0 0 0 9472 67912.34375 0.5792526352397223 -6 0.13254165649414062 4 2 Oxidation (M) _M(Oxidation (M))DLALWM(Oxidation (M))F_ ENST00000561938.1_1_16:79030112-79030229:+|nuORF 15.768221252438446 0.4777766048089751 2 VE{M(Oxidation (M))|F} 3 -1 24.693 0 0 2.3351 0 0 664.3160267560562 0 664.3160267560562 0 6.73393743112328 0 0 0 0 0 0 0 VE{M(Oxidation (M))|F} 2.3351 - 220 NaN NaN 124110.5 NaN 6842 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9477 47.672 NaN 96431 35 0 19166 0.261 + 30664 VPDSPENEL 9 53 500.23507398338484 998.4555950335697 2 500.235107421875 MULTI HCD FTMS 0 0 0 9472 47640.77734375 0.5242314870924528 7 -0.19747543334960938 5 Unmodified _VPDSPENEL_ ENSG00000132849|ENST00000642238|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;nc|ENSG00000132849|Q8NI35|PATJ 18.1463463914782 0.20357593197100715 2 NE{I|L} 3 6 30.005 0 0 3.0051 0 0 624.2759644277185 0 624.2759644277185 0 22.073259432077563 0 0 0 0 0 0 0.3807196863200844 + NE{I|L} 3.0051 + + 16 NaN NaN 101255.1 NaN 6843 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9478 47.675 NaN 172920 35 0 39648 0.261 + 8 AAEVKHLL 8 38 440.7661020565379 879.5176511798758 2 440.7663879394531 MULTI HCD FTMS 0 0 0 9472 70463.8203125 0.28455490700681874 -6 0.13254165649414062 6 Unmodified _AAEVKHLL_ ENST00000381279.3_1_6:139981105-139981588:+|nuORF 15.847184025352803 0.47719562709667024 2 {I|L}{I|L} 2 6 30.969 0 0 3.5211 0 0 635.3390603369055 0 635.3390603369055 0 22.897131498072127 0 0 0 1 0 0 0 + {I|L}{I|L} 3.5211 + + 21 + NaN NaN 109481.1 NaN 6844 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9479 47.679 NaN 101770 35 0 13854 0.261 + 15916 LPLTEHEL 8 52 476.2609071508243 950.5072613684487 2 476.2608337402344 MULTI HCD FTMS 0 0 0 9472 49093.53125 0.12685359689284012 9 -0.25701904296875 7 Unmodified _LPLTEHEL_ ENSG00000172578|ENST00000341319|KLHL6 38.15118350030904 0.25467990583502337 2 {I|L}P{I|L} 3 5 48.729 0 0 5.1266 0 0 0 624.2644241022163 624.2644241022163 30.937040524562246 0 0 0 0 0.7302046884880937 1.5228787452803376 0 0 + {I|L}P{I|L} 5.1266 + + 51 + NaN NaN 100842.3 NaN 6845 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9480 47.682 NaN 95812 35 0 12318 0.261 -1 RDALAQEYLM 10 40 613.2977502500509 1224.5809475669016 2 613.2976684570312 MULTI HCD FTMS 0 0 0 9472 32807.41015625 0.8704020098627702 1 -0.039546966552734375 8 Oxidation (M) _RDALAQEYLM(Oxidation (M))_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 23.80106514851385 0.2884848839100546 2 AQEY{I|L}{M(Oxidation (M))|F} 6 -1 60.706 0 0 4.9573 0 0 455.2494374005875 0 455.2494374005875 0 53.71645960868548 0 0 0 1.805462187404089 0 0 0 AQEY{I|L}{M(Oxidation (M))|F} 4.9573 + + 46 NaN NaN 92628.8 NaN 6846 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9481 47.685 NaN 150600 35 0 8813.9 0.261 + -1 GQFCCYCCCC 10 49 595.1546391525751 NaN 0 595.154052734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _GQFC(Carbamidomethyl (C))CYCCCC_ REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112588.7 NaN 6847 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9482 47.689 NaN 84945 35 0 5225.5 0.263 -1 TEMVECSL 8 32 492.70411491427404 983.3936768953481 2 492.7039489746094 MULTI HCD FTMS 0 0 0 9472 15979.958984375 0.1968677775349135 30 -0.8514366149902344 10 Carbamidomethyl (C),Oxidation (M) _TEM(Oxidation (M))VEC(Carbamidomethyl (C))SL_ ENSG00000012779|ENST00000374391|ALOX5;ENST00000483623.2_1_10:45920415-45923886:+|nuORF;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5 8.593279151180031 0.5292430274356741 2 S{I|L} 2 -1 30.217 0 0 3.0727 0 0 765.2684803693375 0 765.2684803693375 0 27.74227503252014 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 3.0727 + + 5 NaN NaN 96742.2 NaN 6848 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9483 47.692 NaN 127280 35 0 14791 0.261 + 3832 EPGPPPELPG 10 53 495.2521661659191 NaN 0 495.25238037109375 PEAK HCD FTMS 0 0 0 9472 29848.43359375 0.8226794578273365 4 -0.118499755859375 11 Unmodified _EPGPPPELPG_ ENST00000599939.1_1_19:7992074-7992344:-|nuORF 13.90604991867851 0.3282826376286837 2 E 1 9 17.985 0 0 1.8194 0 0 574.2789467343789 282.1455692222671 856.424515956646 0 0 0 0 0 0.9247425010840047 0 0.3252574989159953 0 + E 1.8194 + + 4 + NaN NaN 109147.5 NaN 6849 2632 9472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9485 47.697 NaN 312340 35 0 28677 0.327 -1 VYKTIMEQF 9 84 587.7939337491523 1173.5733145651045 2 588.3086547851562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ BAIAP2-TBCD|1|fusion;ENSG00000175866|ENST00000428708|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2 38.61474834105838 0.07170385841135779 2 [YK]TK{I|L}{M(Oxidation (M))|F}CY 8 -1 42.988 0 0 3.663 0 0 0 124.04260390962568 124.04260390962568 4.809581866633714 0 0 0 0 0 0 1.2658715643802765 0.5994850021680094 [YK]TK{I|L}{M(Oxidation (M))|F}CY 3.663 - 965 NaN NaN 139870.5 NaN 6850 2633 9484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9486 47.701 NaN 835520 35 0 62863 0.261 + 24201 RYFKGPELL 9 93 561.8209450271612 1121.6273371211223 2 561.8190307617188 MULTI HCD FTMS 0 0 0 9484 339713.5 0.39898015704594947 -4 0.1021270751953125 2 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 83.42873516780209 0.004742894019233849 2 [EP]G{I|L}VVGPE{I|L}{I|L} 11 6 + 82.804 0 0 7.3825 7.3825 88.358 0 0 0 5.149098156090631 16.57577319177794 5.149098156090631 4.771212547196626 0 1.079689690656103 1.3010299956639813 1.0994850021680094 0 [EP]G{I|L}VVGPE{I|L}{I|L};[EP]{I|L}GVVGPE{I|L}{I|L};[YR]{M(Oxidation (M))|F}KGPE{I|L}{I|L};[EP]G{I|L}VVG{I|L}EP{I|L};[EP]G{I|L}VVG{I|L}PE{I|L};[EP]G{I|L}VV{I|L}GEP{I|L};[EP]{I|L}GVVG{I|L}EP{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}EP{I|L};[EP]G{I|L}VV{I|L}GPE{I|L};[EP]{I|L}GVVG{I|L}PE{I|L} 7.3825;6.9571;6.9235;6.8343;6.6217;6.5227;6.4089;6.3752;6.3101;6.1963 -;-;+;-;-;-;-;-;-;- + 4433 NaN NaN 211876 NaN 6851 2633 9484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9487 47.705 NaN 350590 35 0 105120 0.261 + 2215 DISPPIFRR 9 68 550.8140668690843 1099.6135808049685 2 550.8145141601562 MULTI HCD FTMS 0 0 0 9484 129237.4609375 0.7551168650334098 2 -0.05587005615234375 3 Unmodified _DISPPIFRR_ ENSG00000155926|ENST00000338087|SLA;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-4|SLA;nc|ENSG00000155926|Q13239-5|SLA 47.748688679222035 0.03472022231463587 2 D{I|L}SP 4 5 54.285 0 0 4.9367 0 0 0 684.3935640924436 684.3935640924436 34.40105620855803 0 0 0 0 0.3494850021680094 1.6989700043360187 0.4247425010840047 0 + D{I|L}SP 4.9367 + + 117 + NaN NaN 132879.7 NaN 6852 2633 9484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9488 47.708 NaN 231240 35 0 22315 0.261 -1 LPDQDEMDL 9 64 546.2315616376973 1090.4485703421944 2 546.23193359375 MULTI HCD FTMS 0 0 0 9484 44681.3125 0.2560069013262009 8 -0.21747207641601562 4 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 18.373094154950223 0.20161688160436167 2 DE{M(Oxidation (M))|F}D{I|L} 5 -1 45.191 0 0 4.1442 0 0 453.22227675605626 0 453.22227675605626 0 30.586681479559203 0 0 0 1 0 0.3252574989159953 0 DE{M(Oxidation (M))|F}D{I|L} 4.1442 + + 46 NaN NaN 120789.7 NaN 6853 2633 9484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9489 47.712 NaN 145780 35 0 18019 0.261 -1 VTLTCEVPA 9 54 495.2521661659191 NaN 0 495.25091552734375 PEAK HCD FTMS 0 0 0 9484 26521.755859375 0.7309899081467477 5 -0.13829803466796875 5 Carbamidomethyl (C) _VTLTC(Carbamidomethyl (C))EVPA_ ENSG00000204305|ENST00000375076|AGER;nc|ENSG00000204305|Q15109-10|AGER;nc|ENSG00000204305|Q15109-2|AGER;nc|ENSG00000204305|Q15109-3|AGER;nc|ENSG00000204305|Q15109-4|AGER;nc|ENSG00000204305|Q15109-6|AGER;nc|ENSG00000204305|Q15109-7|AGER;nc|ENSG00000204305|Q15109-8|AGER;nc|ENSG00000204305|Q15109-9|AGER 7.289230182591677 0.2599242500475609 2 E 1 -1 13.227 0 0 1.3381 0 0 285.16841025609807 571.2562349908811 856.4246452469793 0 0 0 0 0 0.7742275032520141 0 0 0 E 1.3381 + + 14 + NaN NaN 103930.2 NaN 6854 2633 9484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9491 47.717 NaN 1332200 35 0 137230 0.327 + 6689 FPNKQGYVL 9 100 533.289789047833 1064.5650251624659 2 533.2901000976562 MULTI HCD FTMS 0 0 0 9490 827914.75 0.9012407078897026 8 -0.22079086303710938 1 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 107.99703571036002 0.003269392969029945 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L} 9 0 + 84.099 0 0 7.8999 7.8999 91.895 0 0 0 22.754537344402905 14.09256854528806 14.09256854528806 9.208187539523749 0 1.8494850021680094 1.5228787452803376 0.3494850021680094 1.1808845489566888 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGVY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[AG]GYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQVGY{I|L};[NP]K{M(Oxidation (M))|F}QGYV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQGVY{I|L} 7.8999;7.0349;7.0349;6.4226;6.3416;6.174;5.7876;5.7624;5.6936;5.4766 +;-;-;-;-;-;-;-;-;- + 3153 NaN NaN 282431 NaN 6855 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9492 47.721 NaN 379950 35 0 24650 0.261 + 34265 YPDRIMNTF 9 77 586.7735938013249 1171.5326346694496 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9490 208564.578125 0.061752171445266214 -18 0.4366111755371094 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 70.92866715596459 0.008787713425443074 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 84.664 0 0 7.2267 7.2267 88.395 0 0 0 16.685756335471424 14.973024840566467 14.973024840566467 5.752574989159953 0 1.8851518780601921 1.3979400086720375 0.5 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F} 7.2267;6.7357;6.4407;5.9497;5.8025;5.7085;5.414;5.0165;4.9225;4.628 +;-;-;-;+;-;-;-;-;- + 776 NaN NaN 141153.4 NaN 6856 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9493 47.725 NaN 465410 35 0 32849 0.261 + 18554 MVEELEKAL 9 83 539.2780863135091 1076.5416196938181 2 539.7922973632812 MULTI HCD FTMS 0 0 0 9490 36112.671875 0.7257529843709657 5 -0.1382904052734375 3 Oxidation (M) _M(Oxidation (M))VEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 57.24910588100465 0.021429789259086996 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 8 7 46.917 0 0 4.3581 0 0 0 127.0442057525445 127.0442057525445 -4.603872202248844 0 -4.603872202248844 0 0 0 2 0.3252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NKVEE 4.3581 - 959 NaN NaN 149984.4 NaN 6857 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9494 47.728 NaN 415730 35 0 92246 0.261 -1 KKYSRHLNYL 10 43 455.2544967760967 1362.74166092849 3 455.2539367675781 MULTI HCD FTMS 0 0 0 9490 103871.6640625 0.8940133809106816 -1 0.0196380615234375 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KKYSRHLNYL_ ENST00000283122.7_1_5:89695279-89695336:-|nuORF 5.40270961882225 0.4467063037482923 2 Y{I|L} 2 -1 30.217 0 0 2.2173 0 0 1068.5817684353178 0 1068.5817684353178 0 23.226825097560422 0 0 0 0.9247425010840047 0 0 0 Y{I|L} 2.2173 + + 34 NaN NaN 141482.5 NaN 6858 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9495 47.731 NaN 267590 35 0 52203 0.261 -1 CLLIILPCFIL 11 57 458.9344726591946 1373.7815885777839 3 458.93475341796875 MULTI HCD FTMS 0 0 0 9490 81019.6015625 0.438097940542255 18 -0.4957733154296875 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLIILPC(Carbamidomethyl (C))FIL_ ENSG00000131015|ENST00000367351|ULBP2;ENSG00000155918|ENST00000367341|RAET1L 3.072263186857199 0.40544676383124106 2 {I|L}{I|L} 2 -1 25.217 0 0 1.8356 0 0 1129.601810764842 0 1129.601810764842 0 15.21144069483583 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 1.8356 + + 13 NaN NaN 141572.5 NaN 6859 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9496 47.735 NaN 112890 35 0 11866 0.261 + 34219 YPDPYGGEKL 10 50 569.7743929237647 1137.5342329143293 2 569.7745971679688 MULTI HCD FTMS 0 0 0 9490 68613.8046875 0.08262802980302794 17 -0.46283721923828125 6 Unmodified _YPDPYGGEKL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 17.44264345198275 0.3479594151168503 2 YPDR 4 7 48.672 0 0 4.2787 0 0 0 603.2682589166624 603.2682589166624 33.979400086720375 0 0 0 0 0.5 1.5228787452803376 0 0 YPDR 4.2787 - 50 + NaN NaN 102591.7 NaN 6860 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9497 47.738 NaN 336120 35 0 27001 0.261 + 14707 LHCLPPSKP 9 78 496.2727114884322 990.5308700436644 2 496.27166748046875 MULTI HCD FTMS 0 0 0 9490 58721.38671875 0.4443021925529642 -4 0.09842300415039062 7 Unmodified _LHCLPPSKP_ ENST00000361483.4_1_12:111798605-111799217:-|nuORF 19.256988751693697 0.19398022840297344 2 [EP]G{I|L}K{M(Oxidation (M))|F}TS{I|L} 9 8 + 65.886 0 0 6.6516 6.6516 86.823 0 0 0 4.247425010840047 10.413705284069223 4.247425010840047 4.247425010840047 0 2.6677353201839438 0 0.9876954943324545 0 [EP]G{I|L}K{M(Oxidation (M))|F}TS{I|L};[PG]E{I|L}K{M(Oxidation (M))|F}TS{I|L};[YR]{M(Oxidation (M))|F}K{I|L}G[HA];{[QN]|[E{I|L}]|[KN]}[PG]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}GP;{[QN]|[E{I|L}]|[KN]}[PG]K{M(Oxidation (M))|F}TS{I|L};[YR]{M(Oxidation (M))|F}K[HQ]{I|L};[PG][{I|L}T]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}GP;{I|L}E[PG]K{M(Oxidation (M))|F}TS{I|L};[TA][VP]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}GP;{[QN]|[E{I|L}]|[KN]}[VP]R{I|L}G[HA] 6.6516;6.2228;5.1737;4.2498;4.1689;3.9414;3.4935;3.3127;3.1323;2.1222 -;-;-;-;-;-;-;-;-;- 342 NaN NaN 146421.2 NaN 6861 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9498 47.741 NaN 256230 35 0 24767 0.261 -1 MADIEYRL 8 65 513.7498229323979 1025.4850929315958 2 513.7501220703125 MULTI HCD FTMS 0 0 0 9490 51600.9921875 0.8951103396618763 -2 0.059185028076171875 8 Oxidation (M) _M(Oxidation (M))ADIEYRL_ ENSG00000111445|ENST00000454402|RFC5;nc|ENSG00000111445|P40937-2|RFC5 34.40172386719151 0.3028461740636462 2 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}EYR{I|L} 8 -1 + 64.672 0 0 6.3065 6.3065 92.271 0 0 0 4.617581349478641 4.617581349478641 4.617581349478641 24.051922431388988 0 2.1307196863200843 1.3979400086720375 0 0 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}EYR{I|L};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}E[HV][VP];{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}[TA]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N;[MT][DV]EYR{I|L};[DV][MT]EYR{I|L};[MT]{I|L}DDYR{I|L} 6.3065;3.9611;3.298;2.2495;1.7516;1.6388 +;-;-;-;-;- + 322 + NaN NaN 121265.5 NaN 6862 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9499 47.745 NaN 181490 35 0 17350 0.261 + 26423 STGAYCGMGEN 11 54 545.2027608893513 1088.3909688455026 2 545.2027587890625 MULTI HCD FTMS 0 0 0 9490 63625.3671875 0.6411913966530852 6 -0.16790771484375 9 Unmodified _STGAYCGMGEN_ ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4;SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant 4.897010918128616 0.3974440401582579 2 SA 2 9 13.188 0 0 1.2117 0 0 0 927.2847272624986 927.2847272624986 -1.7609125905568135 0 -1.7609125905568135 0 0 0 0 0 0 SA 1.2117 - 4 + NaN NaN 104870.8 NaN 6863 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9500 47.748 NaN 60903 35 0 10129 0.261 + 10023 IEWGNNPMEI 10 32 601.7791605172606 1201.5437681013211 2 601.7785034179688 MULTI HCD FTMS 0 0 0 9490 19658.939453125 0.10464956673271109 30 -0.8515968322753906 10 Unmodified _IEWGNNPMEI_ ENSG00000171246|ENST00000306773|NPTX1 2.735195868890462 0.4608258780945842 2 VE{I|L} 3 8 26.198 0 0 2.1804 0 0 842.3362904279312 0 842.3362904279312 0 21.593793813122062 0 0 0 0 0 0 0 VE{I|L} 2.1804 - 8 NaN NaN 97658.6 NaN 6864 2634 9490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9502 47.753 NaN 306330 35 0 35031 0.326 + 18206 MPDLPEKL 8 74 479.7493489352233 957.4841449372466 2 479.7493896484375 MULTI HCD FTMS 0 0 0 9501 191138.625 0.849204122261682 -6 0.15799713134765625 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 55.50274090549119 0.09370106398411177 2 {M(Oxidation (M))|F}PD{I|L}PEK{I|L} 8 0 + 51.808 0 0 5.4109 5.4109 85.411 0 0 0 6.023050448947629 6.023050448947629 6.023050448947629 6.023050448947629 0 1.8723637474483468 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{M(Oxidation (M))|F}PD{I|L}P{[VA]|[{I|L}G]}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P[K{I|L}]E;[EP]{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{I|L} 5.4109;4.7818;3.3444;2.1156;0.79157 +;+;-;-;- + 147 + NaN NaN 129601.3 NaN 6865 2635 9501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9503 47.757 NaN 503050 35 0 93719 0.261 + 25979 SPDSEVTSL 9 55 467.7217775072609 933.4290020813219 2 467.7218017578125 MULTI HCD FTMS 0 0 0 9501 253774.671875 0.546029620975289 -2 0.05587005615234375 2 Unmodified _SPDSEVTSL_ ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8 54.773552608820026 0.024892918755467567 2 VTS{I|L} 4 5 54.993 0 0 5.8915 0 0 515.1857763263839 0 515.1857763263839 0 36.29615981915208 0 0 0 1.5 0 0.805462187404089 0 + VTS{I|L} 5.8915 + + 48 NaN NaN 163918.5 NaN 6866 2635 9501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9504 47.761 NaN 158260 35 0 21392 0.261 + 4163 ETPQVAVIVR 10 53 556.326908086757 1110.639263240314 2 556.3272094726562 MULTI HCD FTMS 0 0 0 9501 50536.62109375 0.40299344083874533 5 -0.13167572021484375 3 Unmodified _ETPQVAVIVR_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000493299.1_1_3:184038318-184039070:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 8.745405648335112 0.42901288225909884 2 V{I|L}VR 4 6 27.167 0 0 2.4461 0 0 625.3070926854297 0 625.3070926854297 0 13.86623162815269 0 0 0 0 0 0 0 + V{I|L}VR 2.4461 + + 68 + NaN NaN 108514.4 NaN 6867 2635 9501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9505 47.764 NaN 436470 35 0 118230 0.263 + 22979 RAARYYYYW 9 71 437.8802196688347 1310.6188296067041 3 437.8805847167969 MULTI HCD FTMS 0 0 0 9501 65434.81640625 0.8284276784923897 1 -0.023082733154296875 4 Unmodified _RAARYYYYW_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6 8.155526934196011 0.2891920862272901 2 YW 2 7 29.776 0 0 2.2719 0 0 943.4666962489352 0 943.4666962489352 0 15.172203223519531 0 0 0 0.8807196863200843 0 0 0 + YW 2.2719 + + 49 NaN NaN 148124.1 NaN 6868 2635 9501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9506 47.768 NaN 176170 35 0 45679 0.261 + 31549 VYGSFASKL 9 52 486.26329135372936 970.5120297742587 2 486.2631530761719 MULTI HCD FTMS 0 0 0 9501 76518.515625 0.8520723000489614 -2 0.05587005615234375 5 Unmodified _VYGSFASKL_ ENSG00000155096|ENST00000337198|AZIN1 65.47368725323818 0.010552856507075443 2 VYGS{M(Oxidation (M))|F}ASK{I|L} 9 0 + 86.741 0 0 8.9376 8.9376 91.008 0 0 0 71.79203922230292 8.256886463274284 8.256886463274284 5.752574989159953 0 1.8129529932484498 2 0.6549471895720985 0 + + VYGS{M(Oxidation (M))|F}ASK{I|L};VYGSA{M(Oxidation (M))|F}SK{I|L};VY[YQ]ASK{I|L};VY{[QS]|[NT]}{M(Oxidation (M))|F}SK{I|L} 8.9376;8.3449;6.2233;5.6305 +;-;-;- + 208 + NaN NaN 124818.1 NaN 6869 2635 9501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9507 47.771 NaN 122620 35 0 26735 0.261 -1 EASLCPASL 9 41 474.2284570522935 946.442361171387 2 474.22796630859375 MULTI HCD FTMS 0 0 0 9501 46202.53515625 0.7717213997983503 -5 0.13465499877929688 6 Carbamidomethyl (C) _EASLC(Carbamidomethyl (C))PASL_ ENSG00000077238|ENST00000395762|IL4R;nc|ENSG00000077238|P24394-3|IL4R 11.640296217721598 0.25978676193971967 2 {I|L}{I|L} 2 -1 20.969 0 0 2.2156 0 0 702.2615833966812 0 702.2615833966812 0 16.365006360318688 0 0 0 0 0 0 0 {I|L}{I|L} 2.2156 - 21 NaN NaN 94541.5 NaN 6870 2635 9501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9509 47.776 NaN 1432100 35 0 211050 0.327 -1 MPETTETVL 9 70 518.7470007342232 1035.4794485352463 2 518.7471923828125 MULTI HCD FTMS 0 0 0 9508 637541.5 0.9035771442106487 -1 0.023082733154296875 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 26.88365393820708 0.12808753336095696 2 {M(Oxidation (M))|F}TV{I|L} 4 -1 37.735 0 0 3.6442 0 0 557.2122669904312 0 557.2122669904312 0 23.75569708000178 0 0 0 0.4247425010840047 0 0.805462187404089 0 {M(Oxidation (M))|F}TV{I|L} 3.6442 - 52 NaN NaN 300282.5 NaN 6871 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9510 47.78 NaN 975420 35 0 320760 0.261 + 8528 HAHLDIEAF 9 76 526.7617656369404 NaN 0 526.76171875 PEAK HCD FTMS 0 0 0 9508 462180.59375 0.5071579956898813 4 -0.10859298706054688 2 Unmodified _HAHLDIEAF_ ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF 100.37149154755038 2.9699053121473635E-05 2 AE{I|L}D{I|L} 5 5 55.692 0 0 5.2964 0 0 165.08008283671842 342.1294344537719 507.20951729049034 0 0 0 0 0 2.41944517631652 0 0.805462187404089 0 AE{I|L}D{I|L} 5.2964 - 450 + NaN NaN 229591.3 NaN 6872 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9511 47.784 NaN 1473200 35 0 290870 0.261 + 34222 YPDPYSRASL 10 104 584.7851243215638 1167.5556957099275 2 584.7855224609375 MULTI HCD FTMS 0 0 0 9508 774897.8125 0.4702364774582521 -6 0.15773773193359375 3 Unmodified _YPDPYSRASL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 83.27773906761396 0.001852393573912202 2 YPDPYSRAS{I|L} 10 0 + 94.957 0 0 8.133 8.133 94.288 0 0 0 52.746338309992694 6.447340481202062 6.447340481202062 14.542425094393252 0 2.587180496500464 1.6989700043360187 1.0669015600442577 0 + + YPDPYSRAS{I|L};YPDPSYRAS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYSRAS{I|L};YPDPY[KT]{[RE]|[WV]};[DP]YPYSRAS{I|L};YPD{I|L}{I|L}P[QA][HD];YPDP{I|L}{I|L}[QA][HD];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S[VG]AS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DPYS[NG]KK;[DP]YPYS[NG]KK 8.133;6.8874;6.5064;6.3654;6.3359;5.1221;4.8468;3.7751;3.3697;3.1993 +;-;+;-;-;-;-;-;-;- + 2253 + NaN NaN 311259 NaN 6873 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9512 47.787 NaN 672360 35 0 55519 0.261 + 8352 GYIESVQHI 9 80 523.2692699548174 1044.5239869764348 2 523.2692260742188 MULTI HCD FTMS 0 0 0 9508 316629.375 0.6122758277785922 2 -0.059345245361328125 4 Unmodified _GYIESVQHI_ ENSG00000125871|ENST00000377710|MGME1 134.295615338601 0.00034446139420701925 2 [YG]{I|L}ESVQH{I|L} 9 0 + 107.19 0 0 10.262 10.262 92.519 0 0 0 2.914478256039672 2.914478256039672 2.914478256039672 6.7609125905568135 0 2.9247425010840047 2 1.4119543704721593 0 + + [YG]{I|L}ESVQH{I|L};[YG]{I|L}TDVQH{I|L};[YG]{I|L}ESV[AG]H{I|L};[YG]E{I|L}SVQH{I|L};[YG]{I|L}TDV[AG]H{I|L};[YG]E{I|L}SV[AG]H{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SVQH{I|L};{[QN]|[E{I|L}]|[KN]}S[YG]VQH{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SV[AG]H{I|L};[YG]{I|L}E[RP]D[VP] 10.262;9.6148;9.3805;8.9743;8.7332;8.0927;6.7645;5.9049;5.883;5.3591 +;-;-;-;-;-;-;-;-;- + 1064 NaN NaN 176571.4 NaN 6874 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9513 47.791 NaN 582110 35 0 130170 0.261 + 15421 LPDKSIASL 9 80 472.27648418261214 942.5384154320243 2 472.2763977050781 MULTI HCD FTMS 0 0 0 9508 225988.703125 0.14691874337237792 -8 0.20133209228515625 5 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 83.42873516780209 0.004742894019233849 2 [{I|L}P]D[KS]{I|L}AS{I|L} 9 0 + 69.024 0 0 7.3232 7.3232 93.165 0 0 0 17.196596782814808 37.32956253501804 17.196596782814808 15.796896906561031 0 1.805462187404089 1.5228787452803376 1.066901560044258 0 + + [{I|L}P]D[KS]{I|L}AS{I|L};[{I|L}P]D[KS]A{I|L}S{I|L};[{I|L}P]D[KS]AS{I|L}{I|L} 7.3232;5.6472;4.1586 +;-;- + 168 NaN NaN 180779.4 NaN 6875 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9514 47.794 NaN 303490 35 0 34519 0.261 + 22276 QPDQTRIVAL 10 65 570.822185686384 1139.629818439568 2 570.8224487304688 MULTI HCD FTMS 0 0 0 9508 102756.71875 0.18292885778856588 -6 0.15773773193359375 6 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 33.4449034751529 0.20229115034201947 2 A{I|L} 2 8 19.949 0 0 1.7504 0 0 937.5002557114407 0 937.5002557114407 0 3.7506126339169974 0 0 0 0.5 0 0 0 + A{I|L} 1.7504 + + 91 NaN NaN 133559.3 NaN 6876 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9515 47.797 NaN 120450 35 0 18134 0.264 -1 0 31 424.08158051091766 NaN 0 424.0819091796875 PEAK HCD FTMS 0 0 0 9508 89268.9375 0.5894883466100003 58 -1.6149139404296875 7 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 1.5938 0 0 0.18836 0 0 390.29202347125096 292.8065584772094 683.0985819484604 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.18836 - 1 + NaN NaN 103518.3 NaN 6877 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9516 47.801 NaN 126540 35 0 8938.4 0.261 + 35441 YYEKLHTYF 9 54 421.8731201589613 1262.5975310770839 3 421.87310791015625 MULTI HCD FTMS 0 0 0 9508 51806.94921875 0.0416965265989464 28 -0.7922821044921875 8 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 9.5439744041441 0.27789851728676895 2 YY 2 7 45.217 0 0 3.5812 0 0 0 933.4447357768134 933.4447357768134 23.226825097560422 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.5812 + + 10 + NaN NaN 102996.4 NaN 6878 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9517 47.804 NaN 209480 35 0 10929 0.261 + 1361 AYPHNLMTF 9 65 555.2577148688594 1108.5008768045186 2 555.2579345703125 MULTI HCD FTMS 0 0 0 9508 82149.9921875 0.05616383994397973 42 -1.2000465393066406 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 43.85829265575387 0.04763305254408404 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 6 27.012 0 0 2.4368 0 0 695.339647361525 0 695.339647361525 0 12.826286717101071 0 0 0 0.7614393726401688 0 0.4247425010840047 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.4368 + + 90 NaN NaN 119469 NaN 6879 2636 9508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9519 47.809 NaN 2045600 35 0 306880 0.327 + 24863 RYQDIIHSI 9 98 572.8086998480891 1143.602846762978 2 572.8091430664062 MULTI HCD FTMS 0 0 0 9518 1070492.625 1 0 0 1 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 137.42381684818497 0.00015474832393368816 2 [YR]QD{I|L}{I|L}HS{I|L} 9 0 + 83.532 0 0 7.3043 7.3043 90.827 0 0 0 16.359921914233908 16.359921914233908 16.359921914233908 9.208187539523749 0 1.8979400086720375 1.3979400086720375 0.6694451763165201 1.2786596949921218 + + [YR]QD{I|L}{I|L}HS{I|L};[YR][AG]D{I|L}{I|L}HS{I|L};RYQD{I|L}{I|L}HS{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{I|L}D[DN]S{I|L};[YR][PG]{[DS]|[MA]|[CV]|TT}{I|L}HS{I|L};RYQD{I|L}{I|L}{I|L}[HS];{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{I|L}D[NS]D{I|L};[YR]{I|L}{I|L}DQHS{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NT{[QG]|[NA]}{I|L}HS{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{I|L}D[NS]VE 7.3043;6.4991;5.8737;5.8703;5.3883;5.2464;5.0343;4.8795;4.5127;3.867 +;-;+;-;-;-;-;-;-;- + 2175 NaN NaN 392871 NaN 6880 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9520 47.813 NaN 697950 35 0 72212 0.261 + 564 APEEHPVLL 9 82 502.77415335255756 1003.5337537719151 2 502.7743225097656 MULTI HCD FTMS 0 0 0 9518 241555.734375 0.00258649086928829 63 -1.7559280395507812 2 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 64.23631603340823 0.01165516075559909 2 [DP]H[DV][VP]{I|L}{I|L} 9 4 + 40.237 0 0 4.0096 4.0096 83.973 0 0 0 8.622731327798544 8.622731327798544 8.622731327798544 7.230749808046326 0 0.9247425010840047 1.154901959985743 0.6307196863200843 0 [DP]H[DV][VP]{I|L}{I|L};[DP][RD][Y{I|L}]{I|L}{I|L};APE{[YC]|[HE]}[VP]{I|L}{I|L};[PS][YK][QT]PA{I|L} 4.0096;3.289;3.1503;0.042488 -;-;+;- + 218 NaN NaN 190821.6 NaN 6881 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9521 47.817 NaN 252810 35 0 37315 0.261 + 2596 DTTSYLIGR 9 66 513.2659965606142 1024.5174401880283 2 513.2669067382812 MULTI HCD FTMS 0 0 0 9518 63507.8828125 0.8755898026268312 1 -0.02629852294921875 3 Unmodified _DTTSYLIGR_ ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant 60.07390631473393 0.0174780869009295 2 {[ES]|[DT]|[{I|L}C]}TSY{I|L}{I|L}{[NV]|[RG]} 9 0 + 54.671 0 0 5.3363 5.3363 90.371 0 0 0 36.51741229020267 7.147642715192504 7.147642715192504 20.6246936830415 0 1.579689690656103 0 0 0 + + {[ES]|[DT]|[{I|L}C]}TSY{I|L}{I|L}{[NV]|[RG]};{[MS]|[{M(Oxidation (M))|F}A]}WY{I|L}{I|L}{[NV]|[RG]} 5.3363;3.3231 +;- + 244 + NaN NaN 122583.7 NaN 6882 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9522 47.82 NaN 131770 35 0 15282 0.261 + -1 VETIVMKKR 9 56 560.3294238564866 NaN 0 560.3297119140625 PEAK HCD FTMS 0 0 0 9518 36682.3359375 0.6938453123345633 4 -0.10547256469726562 4 Oxidation (M) _VETIVM(Oxidation (M))KKR_ REV__ENSG00000234409|ENST00000439765|CCDC188 7.289230182591677 0.2599242500475609 2 {I|L}VT 3 -1 16.114 0 0 1.4405 0 0 577.3388881409045 225.0882509820922 802.4271391229967 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}VT 1.4405 - 42 + NaN NaN 100193.5 NaN 6883 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9523 47.824 NaN 144400 35 0 7981.6 0.261 + 2635 DVAVVAGGLGR 11 55 507.29168266604233 NaN 0 507.29156494140625 PEAK HCD FTMS 0 0 0 9518 29182.201171875 0.6413037982431163 2 -0.045928955078125 5 Unmodified _DVAVVAGGLGR_ ENSG00000071553|ENST00000369762|ATP6AP1 37.07464296494664 0.15087127264200398 2 GAVV 4 8 28.576 0 0 2.8222 0 0 401.2422875959534 282.10883508853755 683.351122684491 0 0 0 0 0 1.805462187404089 0 0 0 GAVV 2.8222 - 92 + NaN NaN 108884.8 NaN 6884 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9524 47.827 NaN 52640 35 0 4362.5 0.261 -1 HFIAEHYMF 9 34 605.7705405955054 1209.5265282578107 2 605.7708740234375 MULTI HCD FTMS 0 0 0 9518 30259.42578125 0.19600388464756555 -13 0.32357025146484375 6 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 14.838274106304384 0.23215694253501695 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 23.188 0 0 1.9171 0 0 734.350877830275 0 734.350877830275 0 7.730012720637374 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9171 + + 6 NaN NaN 92538.6 NaN 6885 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9525 47.83 NaN 166220 35 0 20724 0.264 + 34039 YNALIGLVVRE 11 49 416.24337567471366 1245.708297624341 3 416.5778503417969 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YNALIGLVVRE_ REV__ENSG00000138771|ENST00000296043|SHROOM3 1.3296431237094175 0.4130893034510334 2 S 1 -1 6.9897 0 0 0.5611 0 0 675.4600198917223 480.20087610416255 1155.6608959958849 0 0 0 0 0 0 0 0 0 S 0.5611 - 5 + NaN NaN 112058.1 NaN 6886 2637 9518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9527 47.835 NaN 350610 35 0 76883 0.327 + 27773 TAVGHALVL 9 49 440.7661020565379 879.5176511798758 2 440.76617431640625 MULTI HCD FTMS 0 0 0 9526 247628.203125 1 0 0 1 Unmodified _TAVGHALVL_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 53.57557251787612 0.02656881086235134 2 V{I|L} 2 7 30.969 0 0 3.5211 0 0 649.3546548193274 0 649.3546548193274 0 -3.7802217037673103 -3.7802217037673103 0 0 1 0 0 0 + V{I|L} 3.5211 + + 43 + NaN NaN 134904.9 NaN 6887 2638 9526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9528 47.84 NaN 246150 35 0 14832 0.261 -1 MMTMERVL 8 68 529.7382042527884 1057.4618555723766 2 529.7384033203125 MULTI HCD FTMS 0 0 0 9526 117241.3203125 1 0 0 2 3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))TM(Oxidation (M))ERVL_ ENST00000487519.5_1_10:60155135-60155255:+|nuORF 13.90604991867851 0.4914777452512057 2 TV{I|L} 3 -1 31.867 0 0 3.0135 0 0 726.2470570294937 0 726.2470570294937 0 1.6896155137222024 0 0 0 0 0 0.805462187404089 0 TV{I|L} 3.0135 - 103 NaN NaN 117547.8 NaN 6888 2638 9526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9529 47.843 NaN 196410 35 0 40221 0.261 + 1463 AYSSISHMAL 10 57 540.2631338999078 1078.5117148666154 2 540.2633056640625 MULTI HCD FTMS 0 0 0 9526 46635.9140625 0.6676861933713875 -6 0.17784500122070312 3 Unmodified _AYSSISHMAL_ ENSG00000198886|ENST00000361381|MT-ND4 10.823927491677226 0.4098686510432541 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 7 25.686 0 0 2.3816 0 0 0 728.3064590895248 728.3064590895248 2.498774732165998 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.3816 - 55 NaN NaN 120679.1 NaN 6889 2638 9526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9530 47.847 NaN 75593 35 0 14167 0.261 + 25508 SFHSHCRKR 9 40 579.2932125217096 NaN 0 579.2940063476562 PEAK HCD FTMS 0 0 0 9526 21610.15234375 0.5486190707488857 -20 0.498779296875 4 Unmodified _SFHSHCRKR_ ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96326.7 NaN 6890 2638 9526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9531 47.85 NaN 121420 35 0 9844.8 0.261 -1 VMSATFAKF 9 67 509.2574144268209 NaN 0 509.25775146484375 PEAK HCD FTMS 0 0 0 9526 22516.833984375 0.4785069839673902 4 -0.10213088989257812 5 Oxidation (M) _VM(Oxidation (M))SATFAKF_ ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2 13.90604991867851 0.22786006501039813 2 G 1 -1 10.797 0 0 1.0622 0 0 794.3998711126278 162.0557802789672 956.455651391595 0 0 0 0 0 0.3807196863200844 0 0 0 G 1.0622 - 42 + NaN NaN 105264.8 NaN 6891 2638 9526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9533 47.855 NaN 1365800 35 0 101610 0.327 + 24202 RYFKGPELL 9 112 561.8209450271612 1121.6273371211223 2 561.8191528320312 MULTI HCD FTMS 0 0 0 9532 742273.25 0.8717707652360218 2 -0.059543609619140625 1 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 86.33184430468982 0.004622086694044132 2 [EP]G{I|L}{I|L}AAPE{I|L}{I|L} 11 7 + 76.7 0 0 6.8383 6.8383 87.456 0 0 0 5.678422434395529 16.575773191777927 5.678422434395529 5.039237471316284 0 0.7302046884880937 1.3010299956639813 1.7416440611282626 0 [EP]G{I|L}{I|L}AAPE{I|L}{I|L};[EP]G{I|L}{I|L}AA{I|L}EP{I|L};[YR]{M(Oxidation (M))|F}KGPE{I|L}{I|L};[EP]{I|L}G{I|L}AAPE{I|L}{I|L};[EP]G{I|L}{I|L}AA{I|L}PE{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}EP{I|L};[EP]{I|L}G{I|L}AA{I|L}EP{I|L};[EP]G{I|L}{I|L}VVGEP{I|L};[YR]{M(Oxidation (M))|F}K{I|L}GEP{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L} 6.8383;6.389;6.332;6.1798;5.9661;5.8828;5.7306;5.7102;5.5433;5.4598 -;-;+;-;-;-;-;-;-;- + 4994 NaN NaN 301524.9 NaN 6892 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9534 47.859 NaN 1538500 35 0 103120 0.261 + 28556 TPTEVKDYL 9 114 533.2762113951735 1064.537869857147 2 533.2901000976562 MULTI HCD FTMS 0 0 0 9532 313976.0625 0.3566829112713435 -5 0.1382904052734375 2 Unmodified _TPTEVKDYL_ ENSG00000106588|ENST00000223321|PSMA2 74.19965305603844 0.007729275404663812 2 TPTEVA{M(Oxidation (M))|F}VTT 10 5 + 61.824 0 0 5.8076 5.8076 91.829 0 0 0 13.499161495794425 0.796896906561031 0.796896906561031 28.40160388729059 0 1.0841218823962109 1.5228787452803376 0.8921590589602533 0 TPTEVA{M(Oxidation (M))|F}VTT;[TP]T[{I|L}P]S{[CA]|SS}Y{I|L};{[QN]|[E{I|L}]|[KN]}PAVS{[CA]|SS}Y{I|L};TPPV{[QN]|[E{I|L}]|[KN]}EP[PS];[TP]TE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}KT;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L};TPPV{[QN]|[E{I|L}]|[KN]}[TP][DP];{I|L}GEEVA{M(Oxidation (M))|F}VTT;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQ[TA]{M(Oxidation (M))|F}{I|L};[TP][R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]SV{I|L} 5.8076;3.1396;3.0363;3.0169;2.8586;2.8142;2.6531;2.4792;2.4555;2.3942 -;-;-;-;-;-;-;-;-;- 6355 + NaN NaN 318770.4 NaN 6893 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9535 47.863 NaN 826750 35 0 72557 0.261 + 19353 NPDEVHAIL 9 93 504.2611244980637 1006.5076960629274 2 504.2613830566406 MULTI HCD FTMS 0 0 0 9532 330472.625 1 0 0 3 Unmodified _NPDEVHAIL_ ENSG00000101447|ENST00000619850|FAM83D;nc|ENSG00000101447|Q9H4H8-2|FAM83D 103.35351024395868 0.004027461563756449 2 NPDEVHA{I|L}{I|L} 9 0 + 58.488 0 0 5.811 5.811 93.062 0 0 0 45.07183756753818 1.9792986699237503 1.9792986699237503 58.48821264658568 0 2.291447825603967 1.2218487496163564 0.3054621874040891 0 + + NPDEVHA{I|L}{I|L} 5.811 + + 175 + NaN NaN 211740.9 NaN 6894 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9536 47.866 NaN 381770 35 0 81984 0.261 + 3882 EPNPDDPLM 9 65 522.2210784312584 1042.4276039293168 2 522.2212524414062 MULTI HCD FTMS 0 0 0 9532 168453.953125 0.5749335024759722 -6 0.157928466796875 4 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 56.17704186161178 0.022929533404884107 2 DP{I|L}{M(Oxidation (M))|F} 4 5 52.818 0 0 5.0669 0 0 552.2195912091812 0 552.2195912091812 0 43.125714851653726 0 0 0 1.7134679910804405 0 1.274227503252014 0 + DP{I|L}{M(Oxidation (M))|F} 5.0669 + + 166 NaN NaN 139761.1 NaN 6895 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9537 47.87 NaN 123290 35 0 24558 0.261 + 33354 YGFYGDII 8 38 474.2284570522935 946.442361171387 2 474.22802734375 MULTI HCD FTMS 0 0 0 9532 36291.390625 0.6061754550705672 -1 0.01963043212890625 5 Unmodified _YGFYGDII_ ENSG00000100422|ENST00000216264|CERK;nc|ENSG00000100422|Q8TCT0-2|CERK 9.347437153973935 0.5250182646323369 2 EQQ{I|L} 4 7 15.78 0 0 1.6673 0 0 430.195604392775 0 430.195604392775 0 10.295044180973214 0 0 0 0 0 0.3807196863200844 0 EQQ{I|L} 1.6673 - 18 NaN NaN 113940.8 NaN 6896 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9538 47.873 NaN 102580 35 0 11109 0.261 + 20532 PDTQQLEQR 9 53 557.7804087764487 NaN 0 557.7802734375 PEAK HCD FTMS 0 0 0 9532 13239.3046875 0.42503462309685835 1 -0.0296173095703125 6 Unmodified _PDTQQLEQR_ REV__ENSG00000144867|ENST00000678299|SRPRB 6.723162845929126 0.26266733336404485 2 DWAE 4 -1 14.157 0 0 1.2713 0 0 197.10548200426598 412.23053919010005 609.336021194366 0 0 0 0 0 0 0 0 0 DWAE 1.2713 - 35 + NaN NaN 105914.4 NaN 6897 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9539 47.876 NaN 136400 35 0 21910 0.261 + -1 SYMIKKNSL 9 56 550.2929980275493 1098.5714431218985 2 550.8142700195312 MULTI HCD FTMS 0 0 0 9532 11048.9990234375 1 0 0 7 Oxidation (M) _SYM(Oxidation (M))IKKNSL_ REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1 9.38312468134398 0.279288223203164 2 NY{[TV]|[{I|L}S]} 4 -1 15.177 0 0 1.3815 0 0 603.3372339927954 0 603.3372339927954 0 5.683728447993344 0 0 0 0.5 0 0 0 NY{[TV]|[{I|L}S]} 1.3815 - 82 + NaN NaN 98478.3 NaN 6898 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9540 47.88 NaN 68621 35 0 5958.4 0.261 + -1 FLFTPDML 8 56 500.24824351248253 NaN 0 500.2349853515625 PEAK HCD FTMS 0 0 0 9532 14351.3486328125 0.3628600086163252 4 -0.11877059936523438 8 Oxidation (M) _FLFTPDM(Oxidation (M))L_ REV__ENSG00000197408|ENST00000324071|CYP2B6 5.230669730166228 0.38822285293237185 2 E 1 -1 6.9897 0 0 0.70003 0 0 131.11488194508382 735.3164766900999 866.4313586351836 0 0 0 0 0 0 0 0 0 E 0.70003 - 6 + NaN NaN 100662.2 NaN 6899 2639 9532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9542 47.885 NaN 298910 35 0 25607 0.327 + 14708 LHCLPPSKP 9 74 496.2727114884322 990.5308700436644 2 496.27166748046875 MULTI HCD FTMS 0 0 0 9541 74010.1640625 0.5599812947481654 2 -0.052883148193359375 1 Unmodified _LHCLPPSKP_ ENST00000361483.4_1_12:111798605-111799217:-|nuORF 19.256988751693697 0.19398022840297344 2 [EP]G{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L} 9 7 + 54.657 0 0 5.518 5.518 84.578 0 0 0 3.4678748622465605 3.4678748622465605 3.4678748622465605 3.4678748622465605 0 2.3807196863200843 0 0.6747425010840047 0 [EP]G{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};[YR]{M(Oxidation (M))|F}K{I|L}G[HA];[PG]E{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};[EP]{I|L}GK{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};[YR]{M(Oxidation (M))|F}K[HQ]{I|L};{[QN]|[E{I|L}]|[KN]}PGK{M(Oxidation (M))|F}{M(Oxidation (M))|F}GP;{[QN]|[E{I|L}]|[KN]}PGK{M(Oxidation (M))|F}{[MG]|[TS]}{I|L};{I|L}EPGK{M(Oxidation (M))|F}TS{I|L};[YR]{M(Oxidation (M))|F}{[HG]|PP}GAA{I|L};{[QN]|[E{I|L}]|[KN]}PGVV{I|L}G[HA] 5.518;5.1679;4.8297;4.6115;4.1449;4.108;4.0777;3.5388;2.6869;2.3625 -;-;-;-;-;-;-;-;-;- 264 NaN NaN 128500.6 NaN 6900 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9543 47.889 NaN 165140 35 0 17240 0.261 + -1 GCICCCFL 8 42 545.2027608893513 1088.3909688455026 2 545.2030639648438 MULTI HCD FTMS 0 0 0 9541 90856.390625 0.9156149280525837 12 -0.3278656005859375 2 4 Carbamidomethyl (C) _GC(Carbamidomethyl (C))IC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))FL_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__ENST00000586664.1_1_19:32873361-32873986:+|nuORF 0.7936320650641473 0.540814922690045 2 A{I|L} 2 -1 16.454 0 0 1.5117 0 0 886.2818972911908 0 886.2818972911908 0 12.474250108400469 0 0 0 0 0 0 0 A{I|L} 1.5117 - 4 NaN NaN 118124.8 NaN 6901 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9544 47.893 NaN 187280 35 0 37644 0.262 + 10734 IRAPEEPRWPL 11 45 455.2544967760967 1362.74166092849 3 455.2543029785156 MULTI HCD FTMS 0 0 0 9541 28576.341796875 0.2459538140114067 5 -0.13835906982421875 3 Unmodified _IRAPEEPRWPL_ REV__ENSG00000159433|ENST00000290607|STARD9 9.764250979337305 0.37200617284565546 2 A[WQ]Y{I|L} 5 -1 32.218 0 0 2.3642 0 0 683.4051647675419 0 683.4051647675419 0 26.73393743112328 0 0 0 1 0 0 0 A[WQ]Y{I|L} 2.3642 - 34 + NaN NaN 129786.9 NaN 6902 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9545 47.896 NaN 194060 35 0 19635 0.261 -1 MADIEYRL 8 65 513.7498229323979 1025.4850929315958 2 513.767578125 MULTI HCD FTMS 0 0 0 9541 14513.400390625 0.2517605612329322 4 -0.10879135131835938 4 Oxidation (M) _M(Oxidation (M))ADIEYRL_ ENSG00000111445|ENST00000454402|RFC5;nc|ENSG00000111445|P40937-2|RFC5 13.042465956692817 0.497831663890332 2 {[C(Carbamidomethyl (C))G]|[NC]}TSY{I|L}{I|L}{[NV]|[RG]} 9 -1 + 31.092 0 0 3.032 3.032 86.55 0 0 0 7.79931155766754 7.147642715192507 7.147642715192507 13.176193466240559 0 0 0 0 0 {[C(Carbamidomethyl (C))G]|[NC]}TSY{I|L}{I|L}{[NV]|[RG]};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}ER[Y{I|L}];{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}[YK]G{[NV]|[RG]};[MT][DV]ER[Y{I|L}];{[C(Carbamidomethyl (C))G]|[NC]}TKA[DV][Y{I|L}];{[C(Carbamidomethyl (C))G]|[NC]}TKE[VG][Y{I|L}];[MT]{I|L}DDR[Y{I|L}];[MT][DV][YK]G{[NV]|[RG]};{[C(Carbamidomethyl (C))G]|[NC]}TS{[VA]|[{I|L}G]}[VG][Y{I|L}] 3.032;1.7471;1.1375;1.1135;0.98636;0.8602;0.74783;0.5038;0.18374 -;-;-;-;-;-;-;-;- 366 + NaN NaN 121019.3 NaN 6903 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9546 47.9 NaN 154170 35 0 33701 0.261 + 24039 RWPKKSAEFLL 11 47 458.9344726591946 1373.7815885777839 3 458.9344482421875 MULTI HCD FTMS 0 0 0 9541 59599.05859375 0.32227046695653216 24 -0.6836891174316406 5 Unmodified _RWPKKSAEFLL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 2.0839675508343545 0.40978109276162705 2 {I|L}{I|L} 2 9 20.969 0 0 1.5264 0 0 1129.6035360538683 0 1129.6035360538683 0 15.484550065040281 0 0 0 0 0 0 0 + {I|L}{I|L} 1.5264 + + 6 NaN NaN 117841.5 NaN 6904 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9547 47.903 NaN 466160 35 0 65195 0.261 + -1 ISNFTEGCSKC 11 57 415.8453221258855 NaN 0 415.8590393066406 PEAK HCD FTMS 0 0 0 9541 6015.86083984375 1 0 0 6 Carbamidomethyl (C) _ISNFTEGC(Carbamidomethyl (C))SKC_ REV__ENSG00000127084|ENST00000375482|FGD3;REV__nc|ENSG00000127084|Q5JSP0-2|FGD3;REV__nc|ENSG00000127084|Q5JSP0-3|FGD3 3.8459078486920597 0.3312104104652976 2 N 1 -1 9.877 0 0 1.1905 0 0 580.5649989431824 132.04511438541252 712.6101133285949 0 0 0 0 0 0 0 0 0.28872548999643577 N 1.1905 + + 6 + NaN NaN 172887.9 NaN 6905 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9548 47.906 NaN 214560 35 0 20322 0.261 + 12772 KYDPNVYSI 9 65 549.776919895863 1097.5392868585259 2 549.7769165039062 MULTI HCD FTMS 0 0 0 9541 54167.37890625 0.6966169677184574 -1 0.0296173095703125 7 Unmodified _KYDPNVYSI_ ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 21.590151480376914 0.17382222009858564 2 VWYS{I|L} 5 6 45.573 0 0 4.1523 0 0 431.21226699043126 0 431.21226699043126 0 19.3753063169585 0 0 0 1 0 0 0 VWYS{I|L} 4.1523 - 241 NaN NaN 123030.2 NaN 6906 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9549 47.91 NaN 235550 35 0 27669 0.261 + 28371 TPDWAERQL 9 63 558.2775358516881 1114.540518770176 2 558.2781372070312 MULTI HCD FTMS 0 0 0 9541 82632.4609375 0.40241741390867336 -4 0.10859298706054688 8 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 84.5221896805406 0.004669506596793478 2 [TP]DWAERQ{I|L} 9 0 + 91.661 0 0 8.2241 8.2241 92.368 0 0 0 15.444087325889981 81.73902187720806 15.444087325889981 9.208187539523749 0 2.4247425010840047 1.3010299956639813 1.1549471895720984 0 + + [TP]DWAERQ{I|L};[TP]DWAER[AG]{I|L};[DP]TWAERQ{I|L};[DP]TWAER[AG]{I|L};[WD][TP]AERQ{I|L};[WD][TP]AER[AG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP]AERQ{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP]AER[AG]{I|L} 8.2241;7.3979;6.18;5.3539;5.2318;4.4056;3.7075;2.8813 +;-;-;-;-;-;-;- + 251 NaN NaN 120400.2 NaN 6907 2640 9541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9551 47.915 NaN 1117700 35 0 156050 0.327 -1 MPETTETVL 9 60 518.7470007342232 1035.4794485352463 2 518.7471923828125 MULTI HCD FTMS 0 0 0 9550 483137.1875 0.6847424365993661 4 -0.10843276977539062 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 26.88365393820708 0.12808753336095696 2 {M(Oxidation (M))|F}TV{I|L} 4 -1 41.542 0 0 4.0119 0 0 557.2145863263687 0 557.2145863263687 0 36.05774396488272 0 0 0 0.805462187404089 0 0.805462187404089 0 {M(Oxidation (M))|F}TV{I|L} 4.0119 - 53 NaN NaN 260754.5 NaN 6908 2641 9550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9552 47.919 NaN 519880 35 0 102790 0.261 + 25980 SPDSEVTSL 9 49 467.7217775072609 933.4290020813219 2 467.7218322753906 MULTI HCD FTMS 0 0 0 9550 295054.96875 0.6348496150663704 4 -0.10843276977539062 2 Unmodified _SPDSEVTSL_ ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8 74.42276476219924 0.007657080072768255 2 VTS{I|L} 4 5 59.24 0 0 6.3465 0 0 515.1854900361516 0 515.1854900361516 0 35.04936226606585 0 0 0 1.8807196863200843 0 0.8494850021680094 0 + VTS{I|L} 6.3465 + + 44 NaN NaN 184207 NaN 6909 2641 9550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9553 47.923 NaN 996130 35 0 93321 0.261 + 19354 NPDEVHAIL 9 98 504.2611244980637 1006.5076960629274 2 504.26123046875 MULTI HCD FTMS 0 0 0 9550 262255.84375 0.7935781178546937 2 -0.05922698974609375 3 Unmodified _NPDEVHAIL_ ENSG00000101447|ENST00000619850|FAM83D;nc|ENSG00000101447|Q9H4H8-2|FAM83D 72.96794272382148 0.008127836904478181 2 NPDEVHA{I|L}{I|L} 9 0 + 34.784 0 0 3.4559 3.4559 83.067 0 0 0 24.606602649636017 2.932264927528138 2.932264927528138 6.453650195120844 0 1.8875918373824812 0 0.3054621874040891 0 + + NPDEVHA{I|L}{I|L};NPDE[H{I|L}]G{I|L}{I|L};NPDE[H{I|L}]AV{I|L};{[CP]|[EA]}D[HA][PA]A{I|L}{I|L} 3.4559;2.8147;1.7198;0.93009 +;-;-;- + 485 + NaN NaN 240838.3 NaN 6910 2641 9550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9554 47.926 NaN 345410 35 0 32539 0.261 + 18207 MPDLPEKL 8 70 479.7493489352233 957.4841449372466 2 479.749267578125 MULTI HCD FTMS 0 0 0 9550 225079.71875 1 0 0 4 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 55.50274090549119 0.09370106398411177 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L} 8 0 + 54.148 0 0 5.6553 5.6553 84.274 0 0 0 2.0277122468424835 2.0277122468424835 2.0277122468424835 2.0277122468424835 0 2.048455006504028 0 1.2059771852360797 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}PEK{I|L};{M(Oxidation (M))|F}PD{I|L}PEK{I|L};{M(Oxidation (M))|F}PD{I|L}P{I|L}GS{I|L};{M(Oxidation (M))|F}PD{I|L}P{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}P{I|L}KE 5.6553;5.4435;4.221;3.9095;2.3919 +;+;-;-;- + 165 NaN NaN 136969.1 NaN 6911 2641 9550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9555 47.929 NaN 80042 35 0 9541.4 0.261 + 31550 VYGSFASKL 9 35 486.26329135372936 970.5120297742587 2 486.76519775390625 MULTI HCD FTMS 0 0 0 9550 5104.8740234375 0.09096344152213837 6 -0.14770126342773438 5 Unmodified _VYGSFASKL_ ENSG00000155096|ENST00000337198|AZIN1 9.38312468134398 0.279288223203164 2 [YV][H{I|L}][TP]E{I|L} 8 6 + 22.253 0 0 2.2929 2.2929 87.546 0 0 0 16.76863094705837 1.8078684183746674 1.8078684183746674 22.25318101209865 0 0.6109243748081782 2 0 0 [YV][H{I|L}][TP]E{I|L} 2.2929 - 26 + NaN NaN 97853.3 NaN 6912 2641 9550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9556 47.932 NaN 63184 35 0 5936.4 0.261 -1 FIRCNSTSLC 10 34 600.7804039864516 1199.546255039703 2 601.282470703125 MULTI HCD FTMS 0 0 0 9550 17587.591796875 0.9029902269828092 1 -0.02295684814453125 6 Carbamidomethyl (C) _FIRCNSTSLC(Carbamidomethyl (C))_ ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94474.3 NaN 6913 2641 9550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9558 47.937 NaN 2453800 35 0 520320 0.327 + 34223 YPDPYSRASL 10 114 584.7851243215638 1167.5556957099275 2 584.7855224609375 MULTI HCD FTMS 0 0 0 9557 1647889.625 1 0 0 1 Unmodified _YPDPYSRASL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 132.13456570155267 1.54189796951664E-05 2 YPDPYSRAS{I|L} 10 0 + 103.65 0 0 8.8779 8.8779 94.453 0 0 0 60.7520785958764 9.334595381166423 9.334595381166423 11.36475816367691 0 2.5119229975844686 1.6989700043360187 1.6866654986684733 0.3252574989159953 + + YPDPYSRAS{I|L};YPDPY[KT]{[RE]|[WV]};YPD{I|L}Q[{M(Oxidation (M))|F}T]{[RE]|[WV]};[DP]YP[QA][HV]E{I|L};YPD{I|L}[AG][{M(Oxidation (M))|F}T]{[RE]|[WV]};YP[HV][QA]PDE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP[QA][HV]E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[RD]APYS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[RD]ASPY{I|L};[DP]YP[QA][H{I|L}]D{I|L} 8.8779;7.9046;5.6155;5.3182;4.8268;4.6847;4.4994;4.2598;3.8617;3.8341 +;-;-;-;-;-;-;-;-;- + 4600 + NaN NaN 458455 NaN 6914 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9559 47.942 NaN 2018700 35 0 493540 0.262 + 15422 LPDKSIASL 9 99 472.27648418261214 942.5384154320243 2 472.2764587402344 MULTI HCD FTMS 0 0 0 9557 1499293.875 0.974714085327813 -2 0.052883148193359375 2 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 110.5527297667825 0.0028521687250969148 2 {I|L}PDKS{I|L}AS{I|L} 9 0 + 91.972 0 0 9.7579 9.7579 92.988 0 0 0 23.743200818263347 8.77017597769688 8.77017597769688 8.77017597769688 0 2.473197507588033 1.6989700043360187 1.7396518287104437 0 + + {I|L}PDKS{I|L}AS{I|L};[{I|L}P]DKS{I|L}AS{I|L};[{I|L}P]DKSA{I|L}S{I|L};[{I|L}P]DKS{I|L}SA{I|L};{[TV]|[{I|L}S]}A[TA]P{I|L}AS{I|L};[DP]{I|L}KS{I|L}AS{I|L};{[TV]|[{I|L}S]}A{I|L}[PA]TAS{I|L};[{I|L}P]DKSAS{I|L}{I|L};[{I|L}P]DKSSA{I|L}{I|L};[{I|L}P]DKSS{I|L}A{I|L} 9.7579;8.8274;7.2873;7.1631;6.9282;6.2548;6.1526;6.1129;6.0844;5.5946 +;+;-;-;-;-;-;-;-;- + 1051 + NaN NaN 391793.2 NaN 6915 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9560 47.946 NaN 1993000 35 0 92538 0.261 + 28557 TPTEVKDYL 9 125 533.2762113951735 1064.537869857147 2 533.2769165039062 MULTI HCD FTMS 0 0 0 9557 803199.6875 0.912450460677184 -2 0.052883148193359375 3 Unmodified _TPTEVKDYL_ ENSG00000106588|ENST00000223321|PSMA2 107.09958533191995 0.0034159042678574016 2 TPTEVA{M(Oxidation (M))|F}VTT 10 5 + 74.493 0 0 6.9977 6.9977 91.293 0 0 0 37.48865814418264 0.727745553625823 0.727745553625823 10.438211485472195 0 1.2376954943324545 1.6989700043360187 1.3274509799928715 0 TPTEVA{M(Oxidation (M))|F}VTT;TPTE{I|L}{I|L}T[YQ];TPT{M(Oxidation (M))|F}{I|L}VRMT;[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[MS]|[{M(Oxidation (M))|F}A]}T{I|L};[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R[TA]{M(Oxidation (M))|F}{I|L};[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KC]P{M(Oxidation (M))|F}{I|L};[TP][DP][{I|L}P]DPT{I|L};[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KC]{I|L}M{I|L};[TP][R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]SV{I|L};[TP][DP][{I|L}P]D{I|L}PT 6.9977;6.0172;5.7228;4.0697;4.0697;3.4375;3.4017;3.3556;3.2957;3.2735 -;-;-;-;-;-;-;-;-;- 5976 + NaN NaN 405423.3 NaN 6916 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9561 47.949 NaN 688400 35 0 35476 0.261 + 24203 RYFKGPELL 9 102 561.8209450271612 1121.6273371211223 2 562.8268432617188 MULTI HCD FTMS 0 0 0 9557 408625.9375 0.6575648752942842 2 -0.055908203125 4 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 18.1463463914782 0.20357593197100715 2 [KQ]A{I|L}KY{M(Oxidation (M))|F}PK 9 9 + 30.988 0 0 2.7628 2.7628 81.101 0 0 0 0.898051249887736 6.425449767853312 0.898051249887736 2.4987747321659945 0 0 0 0 1.4489700043360187 [KQ]A{I|L}KY{M(Oxidation (M))|F}PK;[KA]GA{I|L}KY{M(Oxidation (M))|F}PK;[KA]Q{I|L}KY{M(Oxidation (M))|F}PK;[QA]K{I|L}KY{M(Oxidation (M))|F}PK;[KQ]A{I|L}KY{[ES]|[DT]|[{I|L}C]}R;[KQ]A{I|L}KYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};[KQ]A[TP]{[SA]|[TG]}{I|L}A[HV];[QA]{I|L}KKY{M(Oxidation (M))|F}PK;[KA]GA{I|L}KY{[ES]|[DT]|[{I|L}C]}R;[YR]{M(Oxidation (M))|F}KGVQPK 2.7628;2.54;2.3626;2.2762;1.9064;1.7847;1.7432;1.6962;1.6836;1.604 -;-;-;-;-;-;-;-;-;- 6672 NaN NaN 188993 NaN 6917 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9562 47.952 NaN 887730 35 0 109610 0.261 + 22277 QPDQTRIVAL 10 85 570.822185686384 1139.629818439568 2 570.822265625 MULTI HCD FTMS 0 0 0 9557 561730.5 1 0 0 5 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 92.65332237495696 0.000798763162112469 2 AV{I|L}RTED 7 9 38.391 0 0 3.3687 0 0 148.12129976130979 204.07776819400627 352.1990679553161 0 0 0 0 0 0 0 1.4604093769761874 0 AV{I|L}RTED 3.3687 - 156 + NaN NaN 221991.3 NaN 6918 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9563 47.955 NaN 1924300 35 0 288070 0.262 + 565 APEEHPVLL 9 95 502.77415335255756 1003.5337537719151 2 503.2663879394531 MULTI HCD FTMS 0 0 0 9557 83512.8046875 0.0016343604392984358 68 -1.9001617431640625 6 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 32.30548876998284 0.10066689432505688 2 AQDPYKG{I|L}{I|L} 9 6 + 33.3 0 0 3.3183 3.3183 82.775 0 0 0 14.97302484056647 6.008337601396864 6.008337601396864 6.008337601396864 0 0.6747425010840047 0 0 0 AQDPYKG{I|L}{I|L};AQDPYKAV{I|L};A[AG]DPYKG{I|L}{I|L};APENYKG{I|L}{I|L};A[AG]DPYKAV{I|L};APENYKAV{I|L};APEEH[VP]{I|L}{I|L};APEGGYKG{I|L}{I|L};APEEH[{I|L}P]V{I|L};APEGGYKAV{I|L} 3.3183;2.7195;2.4007;2.2656;1.802;1.6668;1.6654;1.348;1.0667;0.74926 -;-;-;-;-;-;+;-;-;- + 697 + NaN NaN 379800.2 NaN 6919 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9564 47.959 NaN 403660 35 0 84977 0.261 -1 KYMPNVKVAVF 11 62 437.90901755807886 1310.7052232744365 3 437.90911865234375 MULTI HCD FTMS 0 0 0 9557 71572.6953125 0.5065737940256916 -7 0.18455886840820312 7 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 6.623454094837244 0.3898724468670146 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.6777 0 0 1145.6262570652552 0 1145.6262570652552 0 6.505149978319906 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6777 + + 27 + NaN NaN 149408.8 NaN 6920 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9565 47.962 NaN 156870 35 0 9515 0.261 + 1362 AYPHNLMTF 9 57 555.2577148688594 1108.5008768045186 2 555.2582397460938 MULTI HCD FTMS 0 0 0 9557 55284.28125 0.037796443321091576 48 -1.3583488464355469 8 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 56.17704186161178 0.022929533404884107 2 {I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4 5 40.508 0 0 3.6543 0 0 582.2545033185562 0 582.2545033185562 0 31.95168783987789 0 0 0 1.5994850021680094 0 0.4247425010840047 0 + {I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.6543 + + 137 NaN NaN 100069.1 NaN 6921 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9566 47.965 NaN 107620 35 0 13652 0.261 + 33355 YGFYGDII 8 48 474.2284570522935 946.442361171387 2 474.22821044921875 MULTI HCD FTMS 0 0 0 9557 42241.96484375 0.705567954858028 2 -0.055908203125 9 Unmodified _YGFYGDII_ ENSG00000100422|ENST00000216264|CERK;nc|ENSG00000100422|Q8TCT0-2|CERK 8.593279151180031 0.5292430274356741 2 {I|L}{I|L} 2 6 19.464 0 0 2.0565 0 0 702.2641468732437 0 702.2641468732437 0 16.365006360318688 0 0 0 0 0 0 0 + {I|L}{I|L} 2.0565 + + 8 NaN NaN 104675.5 NaN 6922 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9567 47.969 NaN 119420 35 0 13631 0.261 + 11771 KEAYALFQFF 10 58 421.88373408725647 NaN 0 421.8730163574219 PEAK HCD FTMS 0 0 0 9557 6091.4775390625 0.35993289132780537 -2 0.052883148193359375 10 Unmodified _KEAYALFQFF_ ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1 3.944395688203298 0.33680843299986807 2 Y 1 9 5.4846 0 0 0.65156 0 0 543.6211536219755 132.04531274967033 675.6664663716458 0 0 0 0 0 0 0 0 0 + Y 0.65156 + + 5 + NaN NaN 99084.7 NaN 6923 2642 9557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9569 47.974 NaN 713820 35 0 148130 0.326 + 2318 DMHTEVTTL 9 83 523.7446609280437 1045.4747689228873 2 523.7447509765625 MULTI HCD FTMS 0 0 0 9568 274505.84375 0.767607563045551 -1 0.0362701416015625 1 Unmodified _DMHTEVTTL_ nc|ENSG00000151914|Q03001-3|DST 52.268347100219714 0.028397529699942435 2 VTT{I|L} 4 5 54.24 0 0 5.1881 0 0 613.2173977370961 0 613.2173977370961 0 28.276143266206258 0 0 0 1.3807196863200843 0 0.8494850021680094 0 + VTT{I|L} 5.1881 + + 670 NaN NaN 207263.4 NaN 6924 2643 9568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9570 47.978 NaN 288820 35 0 86666 0.261 + 8529 HAHLDIEAF 9 50 526.7617656369404 NaN 0 526.76171875 PEAK HCD FTMS 0 0 0 9568 95282.421875 0.1045548920834643 11 -0.2879829406738281 2 Unmodified _HAHLDIEAF_ ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF 42.09456458481378 0.07155800144855468 2 AE{I|L}D 4 6 35.918 0 0 3.4158 0 0 165.08002498905256 455.21601282291255 620.2960378119651 0 0 0 0 0 1.4247425010840047 0 0.4247425010840047 0 AE{I|L}D 3.4158 - 48 + NaN NaN 126678.6 NaN 6925 2643 9568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9571 47.982 NaN 696790 35 0 76510 0.261 + 24888 RYQQWMERF 9 87 448.5484795131475 1342.6236091396427 3 448.548828125 MULTI HCD FTMS 0 0 0 9568 174720.203125 0.7232057941871217 -4 0.11877059936523438 3 Unmodified _RYQQWMERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 34.221707139014875 0.09187037853496335 2 WMER{M(Oxidation (M))|F} 5 4 41.714 0 0 3.1069 0 0 575.2826489071746 0 575.2826489071746 0 24.93176063587347 0 0 0 1.4247425010840047 0 0.3054621874040891 0 + WMER{M(Oxidation (M))|F} 3.1069 + + 195 + NaN NaN 201908.8 NaN 6926 2643 9568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9572 47.985 NaN 240770 35 0 21762 0.261 + 9729 HYAALAHYF 9 63 546.7668131377312 1091.5190733422623 2 546.766845703125 MULTI HCD FTMS 0 0 0 9568 45156.5625 0.5788708591115195 -2 0.05922698974609375 4 Unmodified _HYAALAHYF_ ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2 93.76273176245871 0.004427368897683185 2 {[WN]|[YH]}AA{I|L}AHY{M(Oxidation (M))|F} 9 0 + 70.635 0 0 6.4712 6.4712 94.407 0 0 0 23.53286222516239 53.64516253185087 23.53286222516239 70.63486257521106 0 1.6989700043360187 1.6989700043360187 0 0 + + {[WN]|[YH]}AA{I|L}AHY{M(Oxidation (M))|F} 6.4712 + + 91 NaN NaN 130495.5 NaN 6927 2643 9568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9573 47.988 NaN 153650 35 0 30661 0.261 + -1 ERNLAEQSSM 10 48 590.767306046464 1179.520059159728 2 590.7671508789062 MULTI HCD FTMS 0 0 0 9568 68775.1875 0.7179616248143669 -8 0.22082901000976562 5 Oxidation (M) _ERNLAEQSSM(Oxidation (M))_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 26.268140514670165 0.2654086933305545 2 STSVS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 7 -1 49.028 0 0 4.1566 0 0 466.23250014472814 0 466.23250014472814 0 41.581079205375744 0 0 0 1.305462187404089 0 0.4247425010840047 0 STSVS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4.1566 - 78 NaN NaN 111185.3 NaN 6928 2643 9568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9575 47.993 NaN 1828100 35 0 95424 0.327 + 34266 YPDRIMNTF 9 114 586.7735938013249 1171.5326346694496 2 586.77392578125 MULTI HCD FTMS 0 0 0 9574 1050033.5 0.310895787281822 -8 0.21738433837890625 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 205.91287158822604 1.025073046229338E-17 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 114.82 0 0 9.8004 9.8004 96.197 0 0 0 69.26776279517917 13.46787486224656 13.46787486224656 15.075156255085389 0 3.1747425010840047 1.5228787452803376 2.1791746928241125 1.1535984316004222 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};[DP]YR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9.8004;8.5136;8.4767;7.708;7.6907;7.1527;6.9725;6.9348;6.922;6.6895 +;-;+;-;-;-;-;-;-;- + 9363 + NaN NaN 357325.2 NaN 6929 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9576 47.998 NaN 154970 35 0 40198 0.261 + -1 FGFWLHCME 9 41 621.7558663545454 1241.4971797758908 2 621.756103515625 MULTI HCD FTMS 0 0 0 9574 84946.25 0.6548121264591887 -3 0.07886505126953125 2 Carbamidomethyl (C),Oxidation (M) _FGFWLHC(Carbamidomethyl (C))M(Oxidation (M))E_ REV__ENST00000247270.3_1_17:29648586-29648760:-|nuORF 8.593279151180031 0.2858735984551981 2 [{I|L}V]{I|L}DE 5 -1 51.95 0 0 4.1845 0 0 0 669.1702364557249 669.1702364557249 21.505149978319906 0 0 0 0 0.8494850021680094 1.6989700043360187 0.4247425010840047 0 [{I|L}V]{I|L}DE 4.1845 - 15 + NaN NaN 109214 NaN 6930 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9577 48.001 NaN 164730 35 0 18320 0.261 + 8665 HFIAEHYMF 9 49 605.7705405955054 1209.5265282578107 2 605.7710571289062 MULTI HCD FTMS 0 0 0 9574 80584.3828125 0.5219812228877013 -6 0.15803909301757812 3 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 67.34385681178166 0.00994769994983633 2 {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 64.09 0 0 5.2988 5.2988 89.002 0 0 0 12.583559388717376 12.583559388717376 12.583559388717376 12.583559388717376 0 2.1237125054200234 1.6989700043360187 0 0 + + {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2988;4.2584 +;+ + 54 NaN NaN 114515.3 NaN 6931 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9578 48.005 NaN 181540 35 0 51322 0.261 + 34404 YPERCDIAL 9 52 540.2631338999078 1078.5117148666154 2 540.2642211914062 MULTI HCD FTMS 0 0 0 9574 69847.0546875 1 0 0 4 Unmodified _YPERCDIAL_ REV__ENSG00000233436|ENST00000422652|BTBD18 6.723162845929126 0.3000504726104499 2 AA{I|L} 3 -1 26.22 0 0 2.4311 0 0 805.3392811505875 0 805.3392811505875 0 18.772547444685763 0 0 0 0.4247425010840047 0 0 0 AA{I|L} 2.4311 - 55 NaN NaN 109285.8 NaN 6932 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9579 48.008 NaN 233700 35 0 16379 0.261 + 12773 KYDPNVYSI 9 65 549.776919895863 1097.5392868585259 2 549.7640991210938 MULTI HCD FTMS 0 0 0 9574 37077.1015625 0.47682827900830643 3 -0.06883621215820312 5 Unmodified _KYDPNVYSI_ ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV 23.789781309258295 0.1548179064208189 2 QVWYS{I|L} 6 6 48.053 0 0 4.3782 0 0 303.15477187324376 0 303.15477187324376 0 7.95371572735597 0 0 0 0.8807196863200843 0 0 0.3494850021680094 QVWYS{I|L} 4.3782 - 393 NaN NaN 124673.3 NaN 6933 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9580 48.011 NaN 107050 35 0 26963 0.261 -1 DYPSKMEYF 9 35 598.252121390999 1194.489689848798 2 598.2527465820312 MULTI HCD FTMS 0 0 0 9574 40257.28515625 0.9340999530859239 3 -0.06883621215820312 6 Oxidation (M) _DYPSKM(Oxidation (M))EYF_ ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7 3.5964929083625545 0.32375295897743744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 98246.1 NaN 6934 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9581 48.015 NaN 94996 35 0 5328.4 0.262 -1 SRVLLCPF 8 45 496.2727114884322 990.5308700436644 2 497.27935791015625 MULTI HCD FTMS 0 0 0 9574 24137.591796875 0.6393709434162178 2 -0.05582427978515625 7 Carbamidomethyl (C) _SRVLLC(Carbamidomethyl (C))PF_ ENST00000360244.8_1_1:150238759-150238873:-|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7152 0 0 825.4518122817489 0 825.4518122817489 0 12.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7152 + + 13 + NaN NaN 90781.7 NaN 6935 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9582 48.018 NaN 54888 35 0 4908 0.261 + 31146 VTVQVVVVR 9 37 499.82141712300876 997.6282813128175 2 499.8215026855469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _VTVQVVVVR_ ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB;nc|ENSG00000188677|Q9HBI1-3|PARVB 6.723162845929126 0.3000504726104499 2 QVV 3 6 11.682 0 0 1.171 0 0 299.18109000598 369.2262362115844 668.4073262175644 0 0 0 0 0 0 0 0 0 + QVV 1.171 + + 8 + NaN NaN 93894 NaN 6936 2644 9574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9584 48.023 NaN 98150 35 0 21684 0.327 + 27774 TAVGHALVL 9 27 440.7661020565379 879.5176511798758 2 440.7660827636719 MULTI HCD FTMS 0 0 0 9583 59008.890625 0.2382963244102408 7 -0.18950653076171875 1 Unmodified _TAVGHALVL_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 23.1484247019978 0.1603590852062899 2 V{I|L} 2 7 30.969 0 0 3.5211 0 0 649.3547311132727 0 649.3547311132727 0 17.897131498072127 0 0 0 1 0 0 0 + V{I|L} 3.5211 + + 14 + NaN NaN 115995.7 NaN 6937 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9585 48.027 NaN 89992 35 0 20661 0.261 -1 SFHEEGDIMVT 11 30 640.7775829117296 1279.5406128902591 2 640.7777709960938 MULTI HCD FTMS 0 0 0 9583 41501.49609375 0.8005347204347808 1 -0.026256561279296875 2 Oxidation (M) _SFHEEGDIM(Oxidation (M))VT_ BOD1L1|p.P2633H|1|0.07|ENSG00000038219|chr4:13599002-13599002|G/T|missense_variant 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106154 NaN 6938 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9586 48.031 NaN 162710 35 0 24528 0.263 + -1 GSVSPPPVTM 10 46 494.2447265419686 NaN 0 494.2610168457031 PEAK HCD FTMS 0 0 0 9583 6656.35986328125 0.3463280332875906 -1 0.029567718505859375 3 Oxidation (M) _GSVSPPPVTM(Oxidation (M))_ REV__ENSG00000170638|ENST00000380909|TRABD;REV__ENST00000463233.1_1_22:50636418-50636945:+|nuORF;REV__nc|ENSG00000170638|Q9H4I3-2|TRABD 9.38312468134398 0.33215363477037435 2 T 1 -1 9.732 0 0 0.98654 0 0 720.3818958556185 162.02263818912346 882.4045340447419 0 0 0 0 0 0.4247425010840047 0 0 0 T 0.98654 + + 25 + NaN NaN 104262.2 NaN 6939 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9587 48.034 NaN 137130 35 0 8033.7 0.261 + 5801 FPAVGMHSL 9 59 487.7419020609276 973.4692511886552 2 487.7413635253906 MULTI HCD FTMS 0 0 0 9583 30759.28125 0.5926157165412191 -6 0.16797637939453125 4 Oxidation (M) _FPAVGM(Oxidation (M))HSL_ ENSG00000167778|ENST00000301463|SPRYD3 50.855029805455786 0.030374663808198754 2 {I|L}MAV 4 7 51.23 0 0 5.2626 0 0 0 556.2198190314476 556.2198190314476 35.47228775315752 0 0 0 0 1.2302046884880937 1.3979400086720375 0 0 {I|L}MAV 5.2626 - 99 + NaN NaN 115970.2 NaN 6940 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9588 48.038 NaN 76140 35 0 19622 0.261 + -1 TYHLPKCIAI 10 34 405.88984808907486 1214.6477148674246 3 405.88995361328125 MULTI HCD FTMS 0 0 0 9583 15598.642578125 0.18073497410217557 21 -0.6046600341796875 5 Carbamidomethyl (C) _TYHLPKC(Carbamidomethyl (C))IAI_ REV__ENSG00000176695|ENST00000585993|OR4F17;REV__ENSG00000177693|ENST00000650172|OR4F4;REV__ENSG00000186092|ENST00000641515|OR4F5;REV__nc|ENSG00000177693|Q96R69|OR4F4;REV__nc|ENSG00000186092|Q8NH21|OR4F5;REV__OR4F4|p.V198Cfs*10|1|0.06|ENSG00000177693|chr15:101922468-101922468|C/-|frameshift_variant 5.783430956126388 0.4446910851847804 2 TY 2 -1 42.206 0 0 3.4748 0 0 0 947.5126281807526 947.5126281807526 26.721675119240516 0 0 0 0 0.4247425010840047 2 0 0 TY 3.4748 + + 10 + NaN NaN 92437.3 NaN 6941 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9589 48.041 NaN 61113 35 0 15149 0.261 + -1 YLMHTQVIH 9 36 579.2932125217096 NaN 0 579.293701171875 PEAK HCD FTMS 0 0 0 9583 25546.89453125 0.6485615332696937 -13 0.3654518127441406 6 Oxidation (M) _YLM(Oxidation (M))HTQVIH_ REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|74|3|anti-sense;REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|61|2|anti-sense 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87112.1 NaN 6942 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9590 48.044 NaN 103490 35 0 6152.4 0.261 -1 VSKRCPLF 8 48 496.2727114884322 990.5308700436644 2 497.279052734375 MULTI HCD FTMS 0 0 0 9583 23139.787109375 0.6129404970916348 3 -0.06885528564453125 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VSKRCPLF_ ENST00000550078.2_2_1:203770756-203770792:+|nuORF 5.230669730166228 0.5342319408533849 2 AQYTQA{M(Oxidation (M))|F} 7 -1 36.172 0 0 3.6517 0 0 163.15258493454138 0 163.15258493454138 0 32.19228530870048 0 0 0 0.1435078169319297 0 0 0 AQYTQA{M(Oxidation (M))|F} 3.6517 - 55 + NaN NaN 110496.9 NaN 6943 2645 9583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9592 48.049 NaN 339250 35 0 40330 0.327 + 28372 TPDWAERQL 9 65 558.2775358516881 1114.540518770176 2 558.2775268554688 MULTI HCD FTMS 0 0 0 9591 160294.15625 0.7806273598893179 2 -0.042598724365234375 1 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 103.82355648334675 0.003950725192926219 2 [TP]DWAERQ{I|L} 9 0 + 100.86 0 0 9.0492 9.0492 93.438 0 0 0 19.503187623076954 14.973024840566467 14.973024840566467 9.208187539523749 0 2.4247425010840047 1.3979400086720375 1.579689690656103 0 + + [TP]DWAERQ{I|L};[TP]DWAER[AG]{I|L};[WD]PTAERQ{I|L};[DP]TWAERQ{I|L};[WD]PTAER[AG]{I|L};[DP]TWAER[AG]{I|L};[WD]PATERQ{I|L};[DP]WTAERQ{I|L};[WD]PATER[AG]{I|L};[DP]WTAER[AG]{I|L} 9.0492;8.223;7.2993;6.7191;6.4731;5.8929;5.8109;5.6193;4.9847;4.7931 +;-;-;-;-;-;-;-;-;- + 773 NaN NaN 142667.2 NaN 6944 2646 9591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9593 48.054 NaN 388840 35 0 75130 0.263 + 20227 NYLNHWNHF 9 57 415.524565851837 1243.551868155711 3 415.5245056152344 MULTI HCD FTMS 0 0 0 9591 86882.6796875 0.6803210488938144 2 -0.042598724365234375 2 Unmodified _NYLNHWNHF_ ENSG00000167363|ENST00000300784|FN3K 21.74664581756881 0.17247014374749275 2 NY{I|L} 3 6 46.995 0 0 3.7791 0 0 0 850.3382055967625 850.3382055967625 33.499934467764874 0 0 0 0 0.3807196863200844 2 0 0 + NY{I|L} 3.7791 + + 52 + NaN NaN 140883 NaN 6945 2646 9591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9594 48.057 NaN 173870 35 0 25521 0.261 + 29600 VAMKKKQKEER 11 66 458.9344726591946 1373.7815885777839 3 458.9342956542969 MULTI HCD FTMS 0 0 0 9591 17446.138671875 0.094336645393979 30 -0.8713455200195312 3 Unmodified _VAMKKKQKEER_ REV__nc|ENSG00000165046|Q2VYF4-3|LETM2 1.214830529360525 0.41359283248740725 2 {I|L}{I|L} 2 -1 20.969 0 0 1.5264 0 0 1129.605281226152 0 1129.605281226152 0 6.9897000433601875 0 0 0 0 0 0 0 {I|L}{I|L} 1.5264 - 62 NaN NaN 107081.2 NaN 6946 2646 9591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9596 48.062 NaN 294850 35 0 31993 0.327 + 18208 MPDLPEKL 8 70 479.7493489352233 957.4841449372466 2 479.7492370605469 MULTI HCD FTMS 0 0 0 9595 181821.96875 0.8078114268125279 6 -0.16986083984375 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 55.50274090549119 0.09370106398411177 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DP{I|L}EK{I|L} 8 2 + 53.28 0 0 5.5646 5.5646 85.1 0 0 0 4.544382569809969 4.544382569809969 4.544382569809969 4.544382569809969 0 1.589136830878453 0 1.305462187404089 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DP{I|L}EK{I|L};{M(Oxidation (M))|F}PD{I|L}PEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DP{I|L}[K{I|L}]E 5.5646;5.09;2.007 -;+;- + 135 NaN NaN 138377.6 NaN 6947 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9597 48.067 NaN 259640 35 0 29871 0.261 + 24864 RYQDIIHSI 9 70 572.8086998480891 1143.602846762978 2 572.8079223632812 MULTI HCD FTMS 0 0 0 9595 89128.921875 0.08325972528302099 10 -0.2884559631347656 2 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 41.95555342248728 0.056367691549927025 2 [YR]QD{I|L}{I|L}HS{I|L} 9 0 + 49.077 0 0 4.2914 4.2914 84.538 0 0 0 5.5893153899759795 27.29364375124895 5.5893153899759795 7.8617532050066075 0 1.0924778212679485 0 0.3807196863200844 0.3252574989159953 + + [YR]QD{I|L}{I|L}HS{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QS]|[NT]}{[QG]|[NA]}{I|L}HS{I|L};[YR][AG]D{I|L}{I|L}HS{I|L};[HS][KP][EP]{I|L}HS{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[QA][NS]{I|L}HS{I|L};[HS][KP][HS]{I|L}PE{I|L} 4.2914;3.604;3.4862;2.865;2.6934;1.4022 +;-;-;-;-;- + 218 NaN NaN 126757.7 NaN 6948 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9598 48.07 NaN 171990 35 0 23400 0.262 -1 SSMFILEDDRF 11 57 459.2118157527275 1374.6136178583824 3 459.2122802734375 MULTI HCD FTMS 0 0 0 9595 15126.2958984375 0.305139172754415 1 -0.0295867919921875 3 Oxidation (M) _SSM(Oxidation (M))FILEDDRF_ ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR 4.11662792887243 0.40086653484894175 2 R{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.416 0 0 1053.4343708874824 0 1053.4343708874824 0 9.859856381998782 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.416 + + 41 + NaN NaN 117197.2 NaN 6949 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9599 48.074 NaN 153830 35 0 11761 0.261 -1 VWEIFYLS 8 66 549.776919895863 1097.5392868585259 2 549.7655639648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VWEIFYLS_ ENST00000330123.9_1_19:52618131-52618170:-|nuORF 12.531546534597751 0.5015908124873912 2 QVYADS{I|L} 7 -1 47.071 0 0 4.2887 0 0 303.15449721504064 0 303.15449721504064 0 34.394651314730496 0 0 0 0.5 0 0 0 QVYADS{I|L} 4.2887 - 247 NaN NaN 109683.5 NaN 6950 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9600 48.077 NaN 139380 35 0 20281 0.261 + 25697 SISETVILR 9 49 509.3002210599324 1016.5858891866649 2 509.30035400390625 MULTI HCD FTMS 0 0 0 9595 40445.18359375 0.9584601456486381 -1 0.013011932373046875 5 Unmodified _SISETVILR_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF 18.1463463914782 0.20357593197100715 2 {[TV]|[{I|L}S]}{[ES]|[DT]|[{I|L}C]}{[TV]|[{I|L}S]}{I|L}[R{I|L}] 9 0 + 25.888 0 0 2.5466 2.5466 87.358 0 0 0 10.403624586739685 5.201812293369844 5.201812293369844 19.286662482156345 0 0.4247425010840047 2 0.4247425010840047 0 + + {[TV]|[{I|L}S]}{[ES]|[DT]|[{I|L}C]}{[TV]|[{I|L}S]}{I|L}[R{I|L}];{NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}{[TV]|[{I|L}S]}{I|L}[R{I|L}] 2.5466;0.64938 +;- + 40 + NaN NaN 109927.6 NaN 6951 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9601 48.08 NaN 63325 35 0 4750.1 0.261 -1 LYKMLSENF 9 42 580.7866674503073 1159.5587819674145 2 580.7861328125 MULTI HCD FTMS 0 0 0 9595 37456.79296875 0.8984106490774812 -5 0.12474441528320312 6 Oxidation (M) _LYKM(Oxidation (M))LSENF_ ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF 7.608950283845883 0.29333554423920943 2 SE{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4 -1 17.435 0 0 1.5036 0 0 664.3580799787125 0 664.3580799787125 0 14.336068845642203 0 0 0 0.4247425010840047 0 0 0 SE{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 1.5036 + + 6 NaN NaN 91961.9 NaN 6952 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9602 48.083 NaN 71107 35 0 10065 0.262 + 27723 TASNVEEAF 9 31 484.22173582961886 966.4289187260378 2 484.2218322753906 MULTI HCD FTMS 0 0 0 9595 30478.28125 0.628780367041324 -2 0.03926849365234375 7 Unmodified _TASNVEEAF_ ENSG00000104388|ENST00000262646|RAB2A;ENST00000396696.1_1_8:61504408-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;ENST00000530071.5_1_8:61496609-61533325:+|nuORF;nc|ENSG00000104388|P61019-2|RAB2A 13.90604991867851 0.24021115267848145 2 EEA{M(Oxidation (M))|F} 4 5 41.938 0 0 4.3395 0 0 472.22734071509973 0 472.22734071509973 0 40.828956512079344 0 0 0 1 0 0 0 + EEA{M(Oxidation (M))|F} 4.3395 + + 22 + NaN NaN 97844.9 NaN 6953 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9603 48.087 NaN 86884 35 0 6331.7 0.261 + 24905 RYQWPWEFSM 10 53 477.2176621246152 1428.6311569740456 3 477.2168884277344 MULTI HCD FTMS 0 0 0 9595 4748.833984375 0.2795137290228447 1 -0.0295867919921875 8 Unmodified _RYQWPWEFSM_ REV__ENSG00000131475|ENST00000253794|VPS25;REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF;REV__ENST00000590339.5_1_17:40925499-40925547:+|nuORF;REV__ENST00000591584.1_1_17:40925493-40926039:+|nuORF 0.5631705045366581 0.4723227536457635 2 M 1 -1 5.4846 0 0 0.3839 0 0 62.00244232780785 1232.570924691041 1294.5733670188488 0 0 0 0 0 0 0 0 0 M 0.3839 + + 7 + NaN NaN 100626.8 NaN 6954 2647 9595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9605 48.092 NaN 1248000 35 0 293690 0.326 + 15423 LPDKSIASL 9 86 472.27648418261214 942.5384154320243 2 472.2765197753906 MULTI HCD FTMS 0 0 0 9604 827845.5625 0.5381951755421374 4 -0.1206512451171875 1 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 107.09958533191995 0.0034159042678574016 2 {I|L}PDKS{I|L}AS{I|L} 9 0 + 98.075 0 0 10.405 10.405 96.679 0 0 0 30.62977812912628 15.656753288559813 15.656753288559813 15.656753288559813 0 2.6237125054200234 1.5228787452803376 1.8807196863200843 0 + + {I|L}PDKS{I|L}AS{I|L};[{I|L}P]DKS{I|L}AS{I|L};[{I|L}P]DKSA{I|L}S{I|L};{[TV]|[{I|L}S]}A[TA]P{I|L}AS{I|L};{I|L}PDKSATV{I|L};[DP]{I|L}KS{I|L}AS{I|L};{[TV]|[{I|L}S]}[VG]SP{I|L}AS{I|L};[{I|L}P]DKSAS{I|L}{I|L};{[SA]|[TG]}{I|L}[TA]P{I|L}AS{I|L};{[TV]|[{I|L}S]}A[TA]PA{I|L}S{I|L} 10.405;8.7443;7.1711;6.9095;6.204;6.1717;5.9467;5.7981;5.5292;5.3364 +;+;-;-;-;-;-;-;-;- + 614 + NaN NaN 272153.4 NaN 6955 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9606 48.096 NaN 1264100 35 0 74697 0.261 + 28558 TPTEVKDYL 9 120 533.2762113951735 1064.537869857147 2 533.2897338867188 MULTI HCD FTMS 0 0 0 9604 411970.25 0.46800621345833715 4 -0.1206512451171875 2 Unmodified _TPTEVKDYL_ ENSG00000106588|ENST00000223321|PSMA2 47.7319792270244 0.034743597693959835 2 TPTEV[TP]K 8 4 53.96 0 0 5.0689 0 0 0 208.0724276178344 208.0724276178344 7.167730834301061 0 0 0 0 1.3807196863200843 1.3979400086720375 0.5554621874040891 0.3252574989159953 TPTEV[TP]K 5.0689 - 3525 + NaN NaN 276577.4 NaN 6956 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9607 48.1 NaN 391470 35 0 42472 0.261 + 22278 QPDQTRIVAL 10 72 570.822185686384 1139.629818439568 2 570.8223266601562 MULTI HCD FTMS 0 0 0 9604 225097.484375 0.40072149255737405 6 -0.169921875 3 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 15.248480904072842 0.3684828712757339 2 AV{I|L} 3 8 16.198 0 0 1.4213 0 0 148.12133427076736 705.2966110572252 853.4179453279926 0 0 0 0 0 0 0 0 0 AV{I|L} 1.4213 - 67 + NaN NaN 155140.4 NaN 6957 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9608 48.103 NaN 771730 35 0 97321 0.261 + -1 MCPVIFSLA 9 77 519.2606977350721 NaN 0 519.2488403320312 PEAK HCD FTMS 0 0 0 9604 14136.265625 0.7062908743083973 3 -0.08771514892578125 4 Carbamidomethyl (C) _MC(Carbamidomethyl (C))PVIFSLA_ REV__ENSG00000166068|ENST00000299084|SPRED1 7.910154910731844 0.25691533546754686 2 AE{M(Oxidation (M))|F} 3 -1 18.06 0 0 1.7424 0 0 131.12039968175344 555.2156466119749 686.3360462937283 0 0 0 0 0 0 0 0.4247425010840047 0 AE{M(Oxidation (M))|F} 1.7424 - 15 + NaN NaN 200395.7 NaN 6958 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9609 48.106 NaN 209080 35 0 16780 0.261 + 24204 RYFKGPELL 9 73 561.8209450271612 1121.6273371211223 2 561.8189086914062 MULTI HCD FTMS 0 0 0 9604 80878.5 0.09498862020979686 11 -0.31816864013671875 5 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 21.536976647645854 0.1742816388551942 2 [EP]G{I|L}VVG{I|L}PE{I|L} 11 8 + 64.115 0 0 5.7163 5.7163 84.78 0 0 0 11.391307656375652 16.575773191777948 11.391307656375652 3.0102999566398125 0 0.23965182871044374 1.3979400086720375 0.6549471895720984 0 [EP]G{I|L}VVG{I|L}PE{I|L};[EP]G{I|L}VV{I|L}GPE{I|L};[EP]G{I|L}VVG[EP]{I|L}{I|L};[YR]{M(Oxidation (M))|F}KG{I|L}PE{I|L};[YR]{M(Oxidation (M))|F}K{I|L}GPE{I|L};[YR]{M(Oxidation (M))|F}KG[EP]{I|L}{I|L};[EP][{I|L}V][VG]G{I|L}PE{I|L};[EP][{I|L}V][VG]{I|L}GPE{I|L};[TP][TP]VVG{I|L}PE{I|L};{[QN]|[E{I|L}]|[KN]}[VP]RG{I|L}PE{I|L} 5.7163;5.4479;5.1841;4.7007;4.4323;4.1685;3.5555;3.2871;2.7982;2.6412 -;-;-;-;-;+;-;-;-;- + 400 NaN NaN 113677.2 NaN 6959 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9610 48.11 NaN 130240 35 0 13847 0.262 + -1 REAEEMLLMGF 11 48 453.2089110824253 1356.604903847476 3 453.20892333984375 MULTI HCD FTMS 0 0 0 9604 26824.83203125 0.5946947203972508 1 -0.029651641845703125 6 2 Oxidation (M) _REAEEM(Oxidation (M))LLM(Oxidation (M))GF_ REV__ENSG00000134014|ENST00000256398|ELP3;REV__nc|ENSG00000134014|Q9H9T3-2|ELP3;REV__nc|ENSG00000134014|Q9H9T3-4|ELP3;REV__nc|ENSG00000134014|Q9H9T3-5|ELP3 4.715918219556657 0.3982382512160552 2 R{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.5457 0 0 1035.4252755704003 0 1035.4252755704003 0 6.690289377098782 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 1.5457 - 30 + NaN NaN 111964 NaN 6960 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9611 48.113 NaN 141770 35 0 13599 0.261 + 25233 SAQVEELAF 9 47 497.249195157567 NaN 0 497.2355041503906 PEAK HCD FTMS 0 0 0 9604 13311.3642578125 0.5174592481258724 8 -0.22922134399414062 7 Unmodified _SAQVEELAF_ ENSG00000205208|ENST00000379205|C4orf46;ENST00000508836.1_1_4:159590767-159593157:-|nuORF 7.910154910731844 0.25691533546754686 2 AQ[YT]QA 6 6 22.224 0 0 2.2392 0 0 165.10511630388265 162.05596338443596 327.16107968831864 0 0 0 0 0 0 0 0 0.3807196863200844 AQ[YT]QA 2.2392 - 52 + NaN NaN 110747.1 NaN 6961 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9612 48.116 NaN 208960 35 0 38707 0.262 + -1 ETMGTCIRHF 10 55 404.1831230113399 1209.5275396342197 3 404.18292236328125 MULTI HCD FTMS 0 0 0 9604 38389.359375 0.6660735425551866 -3 0.06885528564453125 8 Oxidation (M) _ETM(Oxidation (M))GTCIRHF_ REV__ENSG00000171016|ENST00000563719|PYGO1;REV__nc|ENSG00000171016|Q9Y3Y4|PYGO1 3.3196427980023873 0.4577323075863651 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.818 0 0 1044.4486039426165 0 1044.4486039426165 0 9.225490200071285 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.818 + + 9 + NaN NaN 128926.6 NaN 6962 2648 9604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9614 48.121 NaN 1866100 35 0 304100 0.327 + 3026 EADPYKAVL 9 95 503.26611319047885 1004.5176734477577 2 503.2663879394531 MULTI HCD FTMS 0 0 0 9613 1183510.25 0.6424348858391967 3 -0.09099960327148438 1 Unmodified _EADPYKAVL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 103.35351024395868 0.004027461563756449 2 {[CP]|[EA]}DPYKAV{I|L} 9 0 + 60.275 0 0 6.0004 6.0004 89.728 0 0 0 8.384767769392738 37.57946772919972 8.384767769392738 11.020599913279625 0 2.223197507588033 0 2.774227503252014 0 + + {[CP]|[EA]}DPYKAV{I|L};{[CP]|[EA]}DPYKA{I|L}V;{[CP]|[EA]}DPY{I|L}GK{I|L};{[CP]|[EA]}DPYKG{I|L}{I|L};{[CP]|[EA]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}EAV{I|L};{[CP]|[EA]}DPY{I|L}AVK;{[CP]|[EA]}DPY{I|L}AKV;[DP][KS]{M(Oxidation (M))|F}EAV{I|L};{[CP]|[EA]}DPY{I|L}G{I|L}K;{[CP]|[EA]}DPY{I|L}{I|L}GK 6.0004;4.9033;3.7674;3.5777;3.2715;3.2697;3.2119;3.1655;2.7281;2.6703 +;-;-;-;-;-;-;-;-;- + 747 NaN NaN 374538.4 NaN 6963 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9615 48.126 NaN 414530 35 0 83962 0.39 + 3883 EPNPDDPLM 9 63 522.2210784312584 1042.4276039293168 2 522.2211303710938 MULTI HCD FTMS 0 0 0 9613 243210.453125 0.8300775081850695 4 -0.11062240600585938 2 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 52.268347100219714 0.028397529699942435 2 DP{I|L}{M(Oxidation (M))|F} 4 5 36.357 0 0 3.4877 0 0 552.2176380841812 0 552.2176380841812 0 27.315534464597704 0 0 0 1.6435078169319297 0 0.8494850021680094 0 + DP{I|L}{M(Oxidation (M))|F} 3.4877 + + 60 NaN NaN 154593.2 NaN 6964 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9616 48.132 NaN 735250 35 0 74138 0.261 + 24889 RYQQWMERF 9 79 448.5484795131475 1342.6236091396427 3 448.5484924316406 MULTI HCD FTMS 0 0 0 9613 139588.953125 0.577789734094407 2 -0.058063507080078125 3 Unmodified _RYQQWMERF_ ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;nc|ENSG00000006744|Q9BQ52-4|ELAC2 34.221707139014875 0.09187037853496335 2 WMER{M(Oxidation (M))|F} 5 4 48.588 0 0 3.6189 0 0 575.281710096512 0 575.281710096512 0 41.598630062565064 0 0 0 1.3494850021680094 0 0.5629529932484498 0 + WMER{M(Oxidation (M))|F} 3.6189 + + 280 + NaN NaN 193864.7 NaN 6965 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9617 48.135 NaN 465410 35 0 134230 0.261 -1 KYMPNVKVAVF 11 44 437.90901755807886 1310.7052232744365 3 437.9090881347656 MULTI HCD FTMS 0 0 0 9613 141287.796875 1 0 0 4 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 9.764250979337305 0.37200617284565546 2 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.3628 0 0 1046.5576840672084 0 1046.5576840672084 0 13.89075625191822 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.3628 + + 26 + NaN NaN 161779.8 NaN 6966 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9618 48.138 NaN 553200 35 0 88318 0.261 -1 ESEHSMDTLL 10 72 589.2555829057159 1176.4966128782316 2 589.2557983398438 MULTI HCD FTMS 0 0 0 9613 101669.578125 0.2689896871315105 -9 0.23686599731445312 5 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 6.723162845929126 0.4397169348982109 2 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 44.68 0 0 3.7978 0 0 496.22289945536784 0 496.22289945536784 0 30.6259189508755 0 0 0 0.9247425010840047 0 0.3494850021680094 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 3.7978 - 104 NaN NaN 168868.5 NaN 6967 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9619 48.142 NaN 190260 35 0 22791 0.262 + 415 AKPDLAEPF 9 58 494.26073328072687 986.5069136282538 2 494.7544860839844 MULTI HCD FTMS 0 0 0 9613 15517.580078125 0.7727153984020889 6 -0.17326736450195312 6 Unmodified _AKPDLAEPF_ REV__chr3:48583780-48584035|194|22.73|0.27|6.4|-|1|COL7A1,COL7A1|1 7.289230182591677 0.29575926068275815 2 T{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.5115 0 0 720.41366519251 0 720.41366519251 0 7.302046884880937 0 0 0 0 0 0.3807196863200844 0 T{M(Oxidation (M))|F} 2.5115 - 27 + NaN NaN 129683.1 NaN 6968 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9620 48.145 NaN 169690 35 0 51078 0.261 -1 CVVDWRAF 8 50 526.7509284480119 NaN 0 526.7615356445312 PEAK HCD FTMS 0 0 0 9613 7097.1845703125 1 0 0 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))VVDWRAF_ ENSG00000214814|ENST00000522917|FER1L6 8.593279151180031 0.38822285293237185 2 AE{I|L}[HA]EA 7 -1 19.965 0 0 1.8988 0 0 165.05805330881714 162.05562769107658 327.11368099989375 0 0 0 0 0 0 0 0 0 AE{I|L}[HA]EA 1.8988 - 26 + NaN NaN 108221.1 NaN 6969 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9621 48.148 NaN 295280 35 0 18765 0.261 + 22546 QSFDKEWVA 9 69 555.2678235880853 1108.5210942429705 2 555.2562866210938 MULTI HCD FTMS 0 0 0 9613 58166.015625 0.5945281609230281 -1 0.029651641845703125 8 Unmodified _QSFDKEWVA_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 29.081581746732265 0.1154664336125038 2 T{M(Oxidation (M))|F} 2 8 22.892 0 0 2.0651 0 0 842.3948563052737 0 842.3948563052737 0 1.438689150928294 0 0 0 0.6694451763165201 0 0 0 T{M(Oxidation (M))|F} 2.0651 - 126 + NaN NaN 124875.7 NaN 6970 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9622 48.152 NaN 340950 35 0 52822 0.261 + 5073 FECLDFVF 8 60 510.22973703722647 1018.444921141253 2 510.23046875 MULTI HCD FTMS 0 0 0 9613 103828.734375 0.7892773646913943 -2 0.059238433837890625 9 Unmodified _FECLDFVF_ ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83-3|COG5;nc|ENSG00000164597|Q9UP83|COG5 9.347437153973935 0.5250182646323369 2 PV{I|L} 3 7 26.427 0 0 2.5948 0 0 691.2303765254915 0 691.2303765254915 0 13.327731244245342 0 0 0 0.5 0 0 0 PV{I|L} 2.5948 - 36 NaN NaN 145227.4 NaN 6971 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9623 48.155 NaN 79346 35 0 6125.4 0.261 + 14158 LAFQEDSRSTL 11 40 633.8199628298862 1265.6253727265723 2 633.8204956054688 MULTI HCD FTMS 0 0 0 9613 56564.99609375 1 0 0 10 Unmodified _LAFQEDSRSTL_ ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L 5.40270961882225 0.3952262174455162 2 [{I|L}A]{M(Oxidation (M))|F}QET 6 5 15.891 0 0 1.2556 0 0 0 573.2522066705686 573.2522066705686 15.890625187447968 0 0 0 0 0 0 0 0 [{I|L}A]{M(Oxidation (M))|F}QET 1.2556 - 18 + NaN NaN 97768 NaN 6972 2649 9613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9625 48.16 NaN 4582100 35 0 226770 0.327 + 34267 YPDRIMNTF 9 129 586.7735938013249 1171.5326346694496 2 586.774169921875 MULTI HCD FTMS 0 0 0 9624 3192339.5 0.9451935601324699 -2 0.068084716796875 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 192.32093250933514 2.3286398909669E-13 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 105.56 0 0 9.0101 9.0101 94.621 0 0 0 58.12430954210324 13.46787486224656 13.46787486224656 11.291615863770872 0 3.079689690656103 1.3010299956639813 1.6877567000190856 1.166386562212267 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRYPNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F} 9.0101;8.0463;7.9258;7.2821;7.2603;6.7721;6.7246;6.6268;6.4962;6.4238 +;+;-;-;-;-;-;-;-;- + 17916 + NaN NaN 732234.9 NaN 6973 2650 9624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9626 48.164 NaN 351320 35 0 39409 0.261 + 8666 HFIAEHYMF 9 68 605.7705405955054 1209.5265282578107 2 605.7710571289062 MULTI HCD FTMS 0 0 0 9624 154381.765625 1 0 0 2 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 89.42679046578446 0.004540987215715461 2 {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 72.075 0 0 5.9589 5.9589 89.956 0 0 0 12.047509540478032 13.068109453757657 12.047509540478032 12.047509540478032 0 2.1989700043360187 1.6989700043360187 0.3252574989159953 0 + + {[{M(Oxidation (M))|F}H]|[RQ]}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}H{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};H{M(Oxidation (M))|F}{I|L}AEHY{M(Oxidation (M))|F}{M(Oxidation (M))|F};[DN][W{I|L}][MT]{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 5.9589;4.9629;4.8785;1.3916 +;-;+;- + 391 NaN NaN 138280.4 NaN 6974 2650 9624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9627 48.168 NaN 333300 35 0 44162 0.261 + 12830 KYFAQALKL 9 77 541.3237242852637 1080.6328956373272 2 541.32373046875 MULTI HCD FTMS 0 0 0 9624 200129.859375 0.786666148295252 -3 0.0976715087890625 3 Unmodified _KYFAQALKL_ ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF 103.35351024395868 0.004027461563756449 2 KY{M(Oxidation (M))|F}AQA{I|L}K{I|L} 9 0 + 86.551 0 0 8.0093 8.0093 90.412 0 0 0 7.187404961837473 7.187404961837473 7.187404961837473 7.187404961837473 0 2.9049471895720984 0 0 0.28872548999643577 + + KY{M(Oxidation (M))|F}AQA{I|L}K{I|L};[YK]{M(Oxidation (M))|F}AQA{I|L}K{I|L};KY{M(Oxidation (M))|F}A[AG]A{I|L}K{I|L};[YK]{M(Oxidation (M))|F}A[AG]A{I|L}K{I|L};[YK]{M(Oxidation (M))|F}A[PS]KK{I|L};[YK]{[SA]|[TG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KK{I|L};[K{I|L}]A[QA][Y{M(Oxidation (M))|F}]K{I|L};{[QN]|[E{I|L}]|[KN]}[R{I|L}][Y{M(Oxidation (M))|F}]K{I|L};[{M(Oxidation (M))|F}V][VG][YQ]KK{I|L} 8.0093;7.3442;7.1572;6.4921;4.2009;1.8189;1.0317;0.74744;0.43856 +;+;-;-;-;-;-;-;- + 338 + NaN NaN 148074.2 NaN 6975 2650 9624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9628 48.171 NaN 124310 35 0 27295 0.261 + -1 LVMRSDCWC 9 51 621.7558663545454 1241.4971797758908 2 621.7562866210938 MULTI HCD FTMS 0 0 0 9624 57767.90625 0.4453065972030261 3 -0.0721893310546875 4 2 Carbamidomethyl (C),Oxidation (M) _LVM(Oxidation (M))RSDC(Carbamidomethyl (C))WC(Carbamidomethyl (C))_ REV__ENST00000541451.5_3_16:2198830-2200035:+|nuORF;REV__ENST00000565592.5_1_16:2190927-2200035:+|nuORF 7.910154910731844 0.2910521888787154 2 [{I|L}V]{I|L}D 4 -1 52.435 0 0 4.2235 0 0 0 798.2117403619749 798.2117403619749 21.989700043360187 0 0 0 0 1.5 1.6989700043360187 0.4247425010840047 0 [{I|L}V]{I|L}D 4.2235 - 28 + NaN NaN 103517.2 NaN 6976 2650 9624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9629 48.175 NaN 189970 35 0 15591 0.261 + 9730 HYAALAHYF 9 65 546.7668131377312 1091.5190733422623 2 546.7669067382812 MULTI HCD FTMS 0 0 0 9624 30924.482421875 0.3964270244691425 5 -0.13483428955078125 5 Unmodified _HYAALAHYF_ ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2 67.41302359171755 0.009925318700911543 2 HYAA[{I|L}A]H 7 2 42.388 0 0 3.8834 0 0 0 325.1186617486938 325.1186617486938 21.419044874025772 0 0 0 0 1.5 1.6989700043360187 0 0 + HYAA[{I|L}A]H 3.8834 + + 53 + NaN NaN 108827.7 NaN 6977 2650 9624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9631 48.18 NaN 339430 35 0 23464 0.327 + 22547 QSFDKEWVA 9 70 555.2678235880853 1108.5210942429705 2 555.2680053710938 MULTI HCD FTMS 0 0 0 9630 88282.578125 0.9023564404442529 1 -0.03293609619140625 1 Unmodified _QSFDKEWVA_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 29.081581746732265 0.1154664336125038 2 VA 2 7 21.454 0 0 1.9353 0 0 920.4018421857437 0 920.4018421857437 0 3.4517533721130143 0 0 0 0.3494850021680094 0 0 0 + VA 1.9353 + + 180 NaN NaN 144167.5 NaN 6978 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9632 48.184 NaN 113010 35 0 12973 0.261 + 28373 TPDWAERQL 9 46 558.2775358516881 1114.540518770176 2 558.2774658203125 MULTI HCD FTMS 0 0 0 9630 51610.7109375 0.2513424940976372 7 -0.1975555419921875 2 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 29.43715596616401 0.11383414875064776 2 TPDWAE 6 3 43.18 0 0 3.8743 0 0 0 412.23090540103755 412.23090540103755 18.48767215588211 0 0 0 0 0.805462187404089 0 0 0 + TPDWAE 3.8743 + + 34 + NaN NaN 103211 NaN 6979 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9633 48.188 NaN 203020 35 0 16415 0.261 + 24865 RYQDIIHSI 9 71 572.8086998480891 1143.602846762978 2 572.8089599609375 MULTI HCD FTMS 0 0 0 9630 55760.76953125 0.052088887143197274 14 -0.425048828125 3 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 15.248480904072842 0.22861284681709862 2 {I|L}HS{I|L} 4 5 34.68 0 0 3.0326 0 0 675.3334828107437 0 675.3334828107437 0 17.690775249321078 0 0 0 0.4247425010840047 0 0 0 + {I|L}HS{I|L} 3.0326 + + 122 NaN NaN 113456 NaN 6980 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9634 48.191 NaN 291180 35 0 83466 0.261 + 1434 AYRIARREP 9 48 566.3234564306516 NaN 0 566.31005859375 PEAK HCD FTMS 0 0 0 9630 6408.82080078125 0.5996932282682872 -1 0.01963043212890625 4 Unmodified _AYRIARREP_ REV__ENSG00000198722|ENST00000635942|UNC13B 4.75600775471527 0.27219989241163056 2 PH 2 -1 10.969 0 0 0.97017 0 0 235.13088904663772 658.3684351422335 893.4993241888712 0 0 0 0 0 0 0 0 0 PH 0.97017 - 12 + NaN NaN 128843 NaN 6981 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9635 48.194 NaN 159180 35 0 9473.8 0.261 + 24205 RYFKGPELL 9 57 561.8209450271612 1121.6273371211223 2 561.8173217773438 MULTI HCD FTMS 0 0 0 9630 73586.46875 0.08642441603978603 14 -0.425048828125 5 Unmodified _RYFKGPELL_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1 32.78568957990786 0.09846250359632436 2 [YR]{M(Oxidation (M))|F}KG[EP]{I|L}{I|L} 9 0 + 43.439 0 0 3.8728 3.8728 82.38 0 0 0 3.6015144778263704 16.478174818886373 3.6015144778263704 3.6015144778263704 0 0.6861818737241735 0 0.8494850021680094 0 + + [YR]{M(Oxidation (M))|F}KG[EP]{I|L}{I|L};[EP]G{I|L}VVG[EP]{I|L}{I|L};[YR]{M(Oxidation (M))|F}KG[{I|L}P]E{I|L};[EP]G{I|L}VVG[{I|L}P]E{I|L} 3.8728;3.5517;3.3157;2.9946 +;-;-;- + 143 NaN NaN 109286.3 NaN 6982 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9636 48.197 NaN 125450 35 0 7023.6 0.261 + 5802 FPAVGMHSL 9 62 487.7419020609276 973.4692511886552 2 487.74200439453125 MULTI HCD FTMS 0 0 0 9630 51904.26171875 1 0 0 6 Oxidation (M) _FPAVGM(Oxidation (M))HSL_ ENSG00000167778|ENST00000301463|SPRYD3 77.98433622928108 0.006504613272346738 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WEVAP 7 7 56.155 0 0 5.7685 0 0 0 144.05094042051363 144.05094042051363 33.00144452714427 0 0 0 0 0.75 1.3979400086720375 1.3996498648046138 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WEVAP 5.7685 - 255 NaN NaN 98310.5 NaN 6983 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9637 48.201 NaN 234050 35 0 32248 0.261 + 15732 LPEYNPRTL 9 58 551.7987139622273 1101.5828749912546 2 551.7991943359375 MULTI HCD FTMS 0 0 0 9630 48624.859375 0.7782545253524584 -2 0.058063507080078125 7 Unmodified _LPEYNPRTL_ ENSG00000179051|ENST00000375436|RCC2 17.44264345198275 0.2096557692338702 2 {I|L}PEYN 5 4 49.949 0 0 4.5342 0 0 0 482.27166885895736 482.27166885895736 39.49092531119419 0 0 0 0 1.1989700043360187 0 0 0 + {I|L}PEYN 4.5342 + + 201 + NaN NaN 122304.4 NaN 6984 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9638 48.204 NaN 127600 35 0 12926 0.261 + 29024 TYERGTYYF 9 40 600.2719557848419 1198.5293586364837 2 600.2726440429688 MULTI HCD FTMS 0 0 0 9630 37412.57421875 0.5356773758303806 -4 0.11730194091796875 8 Unmodified _TYERGTYYF_ ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2 17.11289562659939 0.2125047172822487 2 YY{M(Oxidation (M))|F} 3 6 29.693 0 0 2.4774 0 0 707.32231337715 0 707.32231337715 0 25.088643834802156 0 0 0 0.5 0 0 0 + YY{M(Oxidation (M))|F} 2.4774 + + 7 NaN NaN 99501.8 NaN 6985 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9639 48.207 NaN 98717 35 0 7065.6 0.264 + 35442 YYEKLHTYF 9 48 421.8731201589613 1262.5975310770839 3 421.87298583984375 MULTI HCD FTMS 0 0 0 9630 27513.8046875 0.022144328247287598 43 -1.2113914489746094 9 Unmodified _YYEKLHTYF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.7416 0 0 1097.5185648679026 0 1097.5185648679026 0 16.505149978319906 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7416 + + 15 + NaN NaN 95572.2 NaN 6986 2651 9630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9641 48.212 NaN 209310 35 0 23409 0.327 + 18209 MPDLPEKL 8 61 479.7493489352233 957.4841449372466 2 479.7492980957031 MULTI HCD FTMS 0 0 0 9640 157604.78125 0.7002176034574417 11 -0.3361320495605469 1 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 45.69961567697781 0.1577113171574352 2 {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 8 0 + 41.164 0 0 4.2992 4.2992 90.24 0 0 0 12.663800089887545 9.704999916446795 9.704999916446795 41.16373455765242 0 1.6549471895720984 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}[EP]K{I|L} 4.2992 + + 65 + NaN NaN 125673.9 NaN 6987 2652 9640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9642 48.217 NaN 522620 35 0 128860 0.261 + 31903 VYNNIMRHYL 10 50 441.56056037737994 1321.6598517323398 3 441.56060791015625 MULTI HCD FTMS 0 0 0 9640 140578.03125 0.3446058104477565 -4 0.1206512451171875 2 Unmodified _VYNNIMRHYL_ ENSG00000115267|ENST00000649979|IFIH1 24.881564428377168 0.27837825820855233 2 VYN 3 7 54.253 0 0 4.1049 0 0 0 942.4638812553113 942.4638812553113 31.293709283484077 0 0 0 0 0.4247425010840047 2 0 0.3807196863200844 + VYN 4.1049 + + 32 + NaN NaN 171741 NaN 6988 2652 9640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9643 48.22 NaN 310820 35 0 43203 0.261 + 32104 VYSAGVYRL 9 61 514.2822073838132 1026.5498618344263 2 514.282470703125 MULTI HCD FTMS 0 0 0 9640 132009.390625 0.7456083675877234 -2 0.0525665283203125 3 Unmodified _VYSAGVYRL_ ENSG00000176248|ENST00000323927|ANAPC2;nc|ENSG00000176248|Q9UJX6-2|ANAPC2 89.40071534611396 0.0045416704840156395 2 VYSAGVYR{I|L} 9 0 + 92.819 0 0 9.0418 9.0418 94.232 0 0 0 73.35499869774067 9.009461452434238 9.009461452434238 9.365429718850734 0 2.474907363720609 1.6989700043360187 0.4247425010840047 0 + + VYSAGVYR{I|L};VYSQVYR{I|L};[YV]SAGVYR{I|L};[YV]SARY[VG]{I|L};VY{[VA]|[{I|L}G]}[SG]YR{I|L};V{I|L}[YG][SG]YR{I|L} 9.0418;8.1295;7.8292;7.4458;4.6036;1.2245 +;-;+;-;-;- + 282 + NaN NaN 134774.3 NaN 6989 2652 9640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9644 48.224 NaN 183230 35 0 37418 0.261 -1 FHHMCYWE 8 53 613.2295317537476 1224.444510574295 2 613.2286987304688 MULTI HCD FTMS 0 0 0 9640 43223.2109375 1 0 0 4 Carbamidomethyl (C),Oxidation (M) _FHHM(Oxidation (M))C(Carbamidomethyl (C))YWE_ ENSG00000085831|ENST00000680483|TTC39A;ENST00000262676.9_2_1:51767237-51767426:-|nuORF;ENST00000524442.1_1_1:51767070-51768798:-|nuORF;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A 0.7936320650641473 0.540814922690045 2 VPEG{M(Oxidation (M))|F}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 -1 40.807 0 0 3.3327 0 0 63.93298416760974 0 63.93298416760974 0 40.80706579873059 0 0 0 0 0 0.3807196863200844 0 VPEG{M(Oxidation (M))|F}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3.3327 - 117 + NaN NaN 123829 NaN 6990 2652 9640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9645 48.227 NaN 108420 35 0 16621 0.261 + 21310 PSGAWYYVPL 10 48 576.790073373034 NaN 0 576.7894287109375 PEAK HCD FTMS 0 0 0 9640 22800.44140625 0.6951431078874135 -1 0.03293609619140625 5 Unmodified _PSGAWYYVPL_ CON__P02662 10.823927491677226 0.33092050725491123 2 {I|L} 1 9 3.4949 0 0 0.30349 0 0 388.2511724147524 647.1977633111936 1035.448935725946 0 0 0 0 0 0 0 0 0 + {I|L} 0.30349 + + 7 + NaN NaN 116148.5 NaN 6991 2652 9640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9647 48.232 NaN 741240 35 0 56300 0.327 -1 LMIGCLVYP 9 105 533.2762113951735 1064.537869857147 2 533.2900390625 MULTI HCD FTMS 0 0 0 9646 131535.984375 0.14942743555113203 9 -0.27685546875 1 Carbamidomethyl (C) _LMIGC(Carbamidomethyl (C))LVYP_ ENSG00000197753|ENST00000360215|LHFPL5 28.173230860318316 0.11963627304438548 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV 8 -1 38.771 0 0 3.642 0 0 0 128.04188063485563 128.04188063485563 -3.025428660206231 0 -3.025428660206231 0 0 0.2742275032520141 1.5228787452803376 0.3054621874040891 0.5796896906561032 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQGYV 3.642 - 2282 NaN NaN 192655.7 NaN 6992 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9648 48.236 NaN 453790 35 0 77002 0.261 + 15424 LPDKSIASL 9 77 472.27648418261214 942.5384154320243 2 472.276611328125 MULTI HCD FTMS 0 0 0 9646 176064.28125 0.11446210627485727 9 -0.27685546875 2 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 47.594388314883695 0.03493607795751234 2 {I|L}PD 3 6 39.213 0 0 4.1604 0 0 0 614.3502291315061 614.3502291315061 15.769921747127498 0 0 0 0 0.3807196863200844 1.3979400086720375 0.3494850021680094 0 + {I|L}PD 4.1604 + + 86 + NaN NaN 157011.6 NaN 6993 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9649 48.24 NaN 658880 35 0 149950 0.261 + 30180 VHEDAKVIREF 11 66 448.24181604930646 1341.7036187481194 3 448.2418212890625 MULTI HCD FTMS 0 0 0 9646 140543.5 1 0 0 3 Unmodified _VHEDAKVIREF_ REV__ENSG00000114302|ENST00000265563|PRKAR2A;REV__nc|ENSG00000114302|P13861-2|PRKAR2A 5.523293073838413 0.3946973793746473 2 AE{M(Oxidation (M))|F} 3 -1 35.005 0 0 2.609 0 0 976.5450360453541 0 976.5450360453541 0 29.5205343810445 0 0 0 0.8807196863200843 0 0 0 AE{M(Oxidation (M))|F} 2.609 - 42 NaN NaN 179597.9 NaN 6994 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9650 48.243 NaN 139010 35 0 14184 0.261 + 12834 KYFEKQFEL 9 58 616.3217705387356 1230.628988144271 2 616.3214111328125 MULTI HCD FTMS 0 0 0 9646 70852.046875 0.1439325656813022 -3 0.0721893310546875 4 Unmodified _KYFEKQFEL_ ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1 39.41278653710922 0.06804041602602826 2 EKQ{M(Oxidation (M))|F}E{I|L} 6 3 60.795 0 0 4.9401 0 0 438.22773940254064 0 438.22773940254064 0 34.59691590396389 0 0 0 1.5356668758921828 0 0.3807196863200844 0.6505149978319906 + EKQ{M(Oxidation (M))|F}E{I|L} 4.9401 + + 225 NaN NaN 123325.3 NaN 6995 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9651 48.247 NaN 167790 35 0 14004 0.261 + 22279 QPDQTRIVAL 10 59 570.822185686384 1139.629818439568 2 570.8221435546875 MULTI HCD FTMS 0 0 0 9646 67245.1875 0.11971076432559742 11 -0.3362007141113281 5 Unmodified _QPDQTRIVAL_ ENSG00000105202|ENST00000221801|FBL 12.240655878213236 0.39661705172222156 2 GA{I|L} 3 8 11.567 0 0 1.015 0 0 880.4766639979649 0 880.4766639979649 0 -7.897131498072126 -7.897131498072126 0 0 0.3494850021680094 0 0 0 GA{I|L} 1.015 - 75 + NaN NaN 122352.5 NaN 6996 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9652 48.25 NaN 71180 35 0 4460.8 0.261 -1 LYKMLSENF 9 53 580.7866674503073 1159.5587819674145 2 580.7871704101562 MULTI HCD FTMS 0 0 0 9646 22389.658203125 0.5370216124929438 1 -0.0296478271484375 6 Oxidation (M) _LYKM(Oxidation (M))LSENF_ ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF 20.41453444215458 0.18397929046831515 2 N{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.98 0 0 880.4365101544937 0 880.4365101544937 0 15.969100130080562 0 0 0 0.3494850021680094 0 0 0 N{M(Oxidation (M))|F} 1.98 + + 18 NaN NaN 97883.4 NaN 6997 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9653 48.253 NaN 114450 35 0 12255 0.263 -1 CLLIILPCFIL 11 47 458.9344726591946 1373.7815885777839 3 459.2688903808594 MULTI HCD FTMS 0 0 0 9646 15412.8583984375 0.10337621091400617 35 -1.0211067199707031 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLIILPC(Carbamidomethyl (C))FIL_ ENSG00000131015|ENST00000367351|ULBP2;ENSG00000155918|ENST00000367341|RAET1L 1.4551175022131473 0.41253901545122046 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.0176 0 0 1208.703247978954 0 1208.703247978954 0 13.979400086720375 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0176 + + 10 + NaN NaN 118251.7 NaN 6998 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9654 48.257 NaN 156020 35 0 21445 0.261 + 10005 IEQKNINKIF 10 47 416.24337567471366 1245.708297624341 3 416.2434997558594 MULTI HCD FTMS 0 0 0 9646 19424.9921875 0.7894921674686802 -2 0.05255889892578125 8 Unmodified _IEQKNINKIF_ REV__tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1 6.1918466704503565 0.44252927588099017 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.0515 0 0 1080.6300028018784 0 1080.6300028018784 0 13.098943791441968 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0515 + + 7 + NaN NaN 108022.6 NaN 6999 2653 9646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9656 48.262 NaN 1412600 35 0 488800 0.327 -1 0 71 411.2223957140927 410.21511924749274 1 411.22235107421875 MULTI HCD FTMS 0 0 0 9655 368474.5625 0.8083448722840734 3 -0.08894729614257812 1 NaN NaN 2 E{I|L} 2 -1 19.068 0 0 4.6483 0 0 150.0775898058896 0 150.0775898058896 0 7.808984056553534 0 0 0 0 0 0.3494850021680094 0 E{I|L} 4.6483 - 13 + NaN NaN 301192.2 NaN 7000 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9657 48.266 NaN 1032100 35 0 187090 0.261 + 24327 RYIANTVEL 9 78 539.7972806644632 1077.5800083957263 2 539.7984008789062 MULTI HCD FTMS 0 0 0 9655 459570.71875 0.7361940061283325 -2 0.0492706298828125 2 Unmodified _RYIANTVEL_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 71.70789743142352 0.008535567138151097 2 [YR]{I|L}ANTVE{I|L} 9 0 + 73.51 0 0 6.8217 6.8217 88.747 0 0 0 3.65279269351241 59.79950116930418 3.65279269351241 8.283409326844264 0 2.079689690656103 0 0.8494850021680094 0.805462187404089 + + [YR]{I|L}ANTVE{I|L};[VP][HV]ANTVE{I|L};[YR]{I|L}AGGTVE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{I|L}]NTVE{I|L};[VP][HV]AGGTVE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{I|L}]GGTVE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP]{[SA]|[TG]}TVE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VE{I|L};{[QN]|[E{I|L}]|[KN]}S[WR]K{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}S[VG]KSV{M(Oxidation (M))|F}{I|L} 6.8217;6.053;5.9672;5.0527;4.4551;4.1982;4.1455;3.5393;2.6204;2.2707 +;-;-;-;-;-;-;-;-;- + 255 NaN NaN 251702.7 NaN 7001 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9658 48.27 NaN 562970 35 0 27712 0.261 + 22637 QVSKQNEHL 9 96 541.7851990020677 1081.5558450709352 2 542.305908203125 MULTI HCD FTMS 0 0 0 9655 31392.22265625 0.8005304389793457 -2 0.0492706298828125 3 Unmodified _QVSKQNEHL_ REV__ENSG00000134077|ENST00000452837|THUMPD3 20.453626601364224 0.18364154288633264 2 {I|L}KEENT{M(Oxidation (M))|F} 7 -1 36.138 0 0 3.3413 0 0 202.13194472480626 0 202.13194472480626 0 1.4172791154881992 0 0 0 0.3252574989159953 0 0 0.2742275032520141 {I|L}KEENT{M(Oxidation (M))|F} 3.3413 - 1627 NaN NaN 187333.6 NaN 7002 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9659 48.273 NaN 456890 35 0 35238 0.261 + 4215 EVAQFLTGR 9 69 510.77717291622156 1019.5397928992431 2 510.7774353027344 MULTI HCD FTMS 0 0 0 9655 127341.5546875 0.9660435755987173 -2 0.0492706298828125 4 Unmodified _EVAQFLTGR_ ENSG00000100418|ENST00000263256|DESI1;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENST00000482612.1_1_22:41999261-42000085:-|nuORF 59.05245873256422 0.018907022117377846 2 {NN|[MP]|[D{I|L}]|[EV]}AQ{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]} 9 0 + 67.303 0 0 6.6013 6.6013 89.589 0 0 0 43.33036515466212 7.147642715192504 7.147642715192504 9.208187539523749 0 1.7971062485323515 1.2218487496163564 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}AQ{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}A[AG]{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]};[QA]VE{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]};[VP]G{[CA]|SS}{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}A[KT]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]};[VP]G[HT][VP]T{[NV]|[RG]} 6.6013;5.6981;4.8823;4.388;1.4763;1.2399 +;-;-;-;-;- + 175 + NaN NaN 166763.6 NaN 7003 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9660 48.276 NaN 205220 35 0 23675 0.261 -1 AMPFKCMQL 9 68 571.2624349430525 1140.510316952905 2 571.7780151367188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _AMPFKC(Carbamidomethyl (C))M(Oxidation (M))QL_ ENSG00000188846|ENST00000396203|RPL14;ENST00000465280.1_1_3:40499395-40500228:+|nuORF;ENST00000481798.1_1_3:40499446-40503006:+|nuORF 12.531546534597751 0.2520865569484384 2 MQA{I|L} 4 -1 28.928 0 0 2.5364 0 0 0 694.2486055963499 694.2486055963499 17.118806617312643 0 0 0 0 0 0 0 0 MQA{I|L} 2.5364 - 75 + NaN NaN 114041.8 NaN 7004 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9661 48.28 NaN 127770 35 0 12231 0.264 + 24159 RYFDGNLEKL 10 63 418.8873226668702 1253.6401386008106 3 418.8874206542969 MULTI HCD FTMS 0 0 0 9655 42970.8984375 0.6842350789785503 1 -0.03299713134765625 6 Unmodified _RYFDGNLEKL_ ENSG00000166233|ENST00000379887|ARIH1 36.39500950444726 0.17669046703598293 2 {I|L}EK{I|L} 4 6 30.177 0 0 2.4072 0 0 752.3225975572356 0 752.3225975572356 0 16.682437647924218 0 0 0 1 0 0 0 + {I|L}EK{I|L} 2.4072 + + 39 + NaN NaN 110823.4 NaN 7005 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9662 48.283 NaN 137000 35 0 16733 0.261 + 26000 SPDSGVYEM 9 45 492.70330450529354 NaN 0 492.7034606933594 PEAK HCD FTMS 0 0 0 9655 63216.48828125 0.7226754685233744 -2 0.0492706298828125 7 Unmodified _SPDSGVYEM_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 26.88365393820708 0.14119366324382274 2 EYT 3 8 30.203 0 0 3.0713 0 0 149.05137274546365 438.1678560846313 587.219228830095 0 0 0 0 0 1.4247425010840047 0 0.3252574989159953 0 EYT 3.0713 - 14 + NaN NaN 110708.2 NaN 7006 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9663 48.286 NaN 277790 35 0 32084 0.261 + 34359 YPEGFEIHSM 10 68 613.2633989596794 1224.5122449861587 2 613.262939453125 MULTI HCD FTMS 0 0 0 9655 68842.296875 0.1994808227693648 -9 0.23877716064453125 8 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 99.75527289724121 0.00025366794806936803 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 108.07 0 0 8.8259 8.8259 96.779 0 0 0 89.65833638269073 9.008760959928907 9.008760959928907 28.79493455131808 0 2.4291746928241125 1.6989700043360187 1.5189301784845295 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE]GHS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{[QG]|[NA]}WEPY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{[QG]|[NA]}WE{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E[HS]PY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E[HS]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{[QG]|[NA]}{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]} 8.8259;6.4744;5.3569;5.3454;5.234;4.9881;4.924;4.6782;4.6153;4.497 +;-;+;-;-;-;-;-;-;- + 983 + NaN NaN 152448.8 NaN 7007 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9664 48.29 NaN 91569 35 0 5212.8 0.263 + 28599 TQGQNGLEF 9 56 497.2353853462303 992.4562177592607 2 497.2355651855469 MULTI HCD FTMS 0 0 0 9655 30606.794921875 0.3947096538825909 4 -0.11534881591796875 9 Unmodified _TQGQNGLEF_ ENSG00000134215|ENST00000370056|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;nc|ENSG00000134215|Q9UKW4-2|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F} 1 8 19.604 0 0 1.9753 0 0 827.3772820676576 0 827.3772820676576 0 19.604093769761874 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.9753 + + 2 + NaN NaN 114307.4 NaN 7008 2654 9655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9666 48.295 NaN 734330 35 0 196490 0.327 + -1 TEDTCPNDLL 10 81 589.2555829057159 1176.4966128782316 2 589.2559204101562 MULTI HCD FTMS 0 0 0 9665 268122.28125 0.7093776710448445 -3 0.08226776123046875 1 Carbamidomethyl (C) _TEDTC(Carbamidomethyl (C))PNDLL_ REV__ENSG00000010626|ENST00000443597|LRRC23 17.11289562659939 0.35104376501799556 2 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 59.196 0 0 5.0315 0 0 496.21990507624224 0 496.21990507624224 0 34.1515592128199 0 0 0 1.3494850021680094 0 0.7742275032520141 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5.0315 - 331 NaN NaN 197122 NaN 7009 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9667 48.299 NaN 235180 35 0 38313 0.262 + 9870 IADPNIAKL 9 55 477.78451200135703 953.5544710695141 2 477.7845458984375 MULTI HCD FTMS 0 0 0 9665 148487.78125 1 0 0 2 Unmodified _IADPNIAKL_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 33.4449034751529 0.0954363425218424 2 {I|L}AD 3 6 57.435 0 0 6.0233 0 0 0 651.3835857638354 651.3835857638354 37.245462655597095 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 + {I|L}AD 6.0233 + + 30 + NaN NaN 122596.4 NaN 7010 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9668 48.303 NaN 275670 35 0 26271 0.261 + 3924 EPTDVVDKL 9 65 508.26866776076776 1014.5227825883355 2 508.2686462402344 MULTI HCD FTMS 0 0 0 9665 127885.71875 0.8501805027901741 2 -0.055950164794921875 3 Unmodified _EPTDVVDKL_ ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF 14.405379775768559 0.2358970535022398 2 [EP]TDVVD[K{I|L}] 9 0 + 31.946 0 0 3.1489 3.1489 86.326 0 0 0 -3.147357368360698 3.7671864199141005 -3.147357368360698 12.218487496163565 0 0 0 0.2614393726401688 0 + + [EP]TDVVD[K{I|L}];[EP]TDVV[VG]{[TV]|[{I|L}S]} 3.1489;1.9445 +;- + 170 + NaN NaN 122026.5 NaN 7011 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9669 48.306 NaN 306960 35 0 37709 0.261 -1 EPNPDDPLM 9 69 522.2210784312584 1042.4276039293168 2 522.2212524414062 MULTI HCD FTMS 0 0 0 9665 108075.484375 0.36886173111887877 10 -0.309844970703125 4 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 25.399314129420986 0.14091189997036632 2 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 22.703 0 0 2.1779 0 0 552.2197925052918 0 552.2197925052918 0 15.713337517843655 0 0 0 1 0 0 0 D[{I|L}P]{M(Oxidation (M))|F} 2.1779 + + 60 + NaN NaN 128451.8 NaN 7012 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9670 48.309 NaN 276800 35 0 77602 0.261 -1 KYMPNVKVAVF 11 51 437.90901755807886 1310.7052232744365 3 437.9090881347656 MULTI HCD FTMS 0 0 0 9665 71105.09375 0.503264226088174 6 -0.181182861328125 5 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 4.715918219556657 0.3982382512160552 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9813 0 0 1046.5550900730677 0 1046.5550900730677 0 11.365006360318688 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.9813 + + 12 + NaN NaN 121993.3 NaN 7013 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9671 48.313 NaN 209230 35 0 11636 0.261 + 1363 AYPHNLMTF 9 62 555.2577693209265 1108.500985708653 2 555.2561645507812 MULTI HCD FTMS 0 0 0 9665 62216.234375 0.05716383720550963 -16 0.43975067138671875 6 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 53.832793166522166 0.026208976789938845 2 {I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4 5 33.761 0 0 3.0456 0 0 582.2582874982437 0 582.2582874982437 0 17.307131330965717 0 0 0 0.8494850021680094 0 0.5 0 + {I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.0456 + + 114 NaN NaN 115788.8 NaN 7014 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9672 48.316 NaN 81624 35 0 7726.5 0.261 + 24160 RYFDGNLEKL 10 36 627.8275471761013 1253.6405414190026 2 628.3302001953125 MULTI HCD FTMS 0 0 0 9665 11600.1337890625 0.27172523219127276 1 -0.026302337646484375 7 Unmodified _RYFDGNLEKL_ ENSG00000166233|ENST00000379887|ARIH1 8.28643447893445 0.4314422896236619 2 {I|L}E[K{I|L}] 4 6 18.94 0 0 1.5108 0 0 752.3222523419937 0 752.3222523419937 0 18.940162615404077 0 0 0 0.4247425010840047 0 0 0 + {I|L}E[K{I|L}] 1.5108 + + 4 NaN NaN 113465.4 NaN 7015 2655 9665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9674 48.321 NaN 3493900 35 0 176850 0.327 + 34268 YPDRIMNTF 9 123 586.7735938013249 1171.5326346694496 2 586.7743530273438 MULTI HCD FTMS 0 0 0 9673 2409784.5 0.713493283125759 4 -0.11860275268554688 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 189.73149822037072 4.1025052375754644E-13 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 105.83 0 0 9.0336 9.0336 95.642 0 0 0 52.946581958978 12.98332479720628 12.98332479720628 15.348017428648063 0 2.6747425010840047 1.3979400086720375 1.7535670587127312 1.180884548956689 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 9.0336;7.7236;6.9387;6.4705;6.421;6.1527;6.1471;6.0149;5.8695;5.6845 +;-;+;-;-;-;-;-;-;- + 13926 + NaN NaN 613342 NaN 7016 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9675 48.325 NaN 2827400 35 0 1062700 0.264 + 12837 KYFEKQFEL 9 100 411.21655779321964 1230.6278439798589 3 411.2159118652344 MULTI HCD FTMS 0 0 0 9673 913743.625 0.8207671250718598 -2 0.059299468994140625 2 Unmodified _KYFEKQFEL_ ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1 46.0223103267499 0.037698999139422325 2 [YK]{M(Oxidation (M))|F}EK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L} 9 0 + 51.972 0 0 4.2232 4.2232 87.088 0 0 0 5.02871106733722 34.9767589882746 5.02871106733722 11.365006360318688 0 1.1237125054200234 0 0.4247425010840047 0.6643943297944485 + + [YK]{M(Oxidation (M))|F}EK{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L};[YK]G[PS]E{M(Oxidation (M))|F}YK{I|L};[{M(Oxidation (M))|F}E][KQ]E{M(Oxidation (M))|F}YK{I|L};[{M(Oxidation (M))|F}E][YK]K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[SG]{M(Oxidation (M))|F}YK{I|L};[{M(Oxidation (M))|F}V]{[ET]|[MV]}{[QG]|[NA]}{M(Oxidation (M))|F}YK{I|L};[YK][EP][SG]{M(Oxidation (M))|F}YK{I|L};[{M(Oxidation (M))|F}E][Q{I|L}][SG]{M(Oxidation (M))|F}YK{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YQ]YK{I|L};[YK][EP][YQ]YK{I|L} 4.2232;3.2997;3.2436;2.8509;2.4567;1.9596;1.9176;1.8244;1.6419;1.1028 +;-;-;-;-;-;-;-;-;- + 253 NaN NaN 511240.4 NaN 7017 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9676 48.329 NaN 320840 35 0 28882 0.261 -1 KYLEMIYSM 9 55 605.2806348417259 1208.5467167502518 2 605.7706909179688 MULTI HCD FTMS 0 0 0 9673 24869.248046875 0.5493044919738388 -1 0.026302337646484375 3 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 2 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 53.493 0 0 4.4262 0 0 404.2399159162125 0 404.2399159162125 0 21.888793896675267 0 0 0 2.1861818737241734 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.4262 + + 220 NaN NaN 137935.8 NaN 7018 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9677 48.332 NaN 203100 35 0 27356 0.262 + 14227 LAVSENHIL 9 53 498.27963391245186 994.5447148917037 2 498.2799072265625 MULTI HCD FTMS 0 0 0 9673 93756.640625 0.8367179663950454 -2 0.059299468994140625 4 Unmodified _LAVSENHIL_ CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1 28.494509381512117 0.11816142465008336 2 {I|L}AVS 4 5 62.211 0 0 6.2553 0 0 0 621.2991386201176 621.2991386201176 49.11236583892361 0 0 0 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0 + {I|L}AVS 6.2553 + + 40 + NaN NaN 114193.8 NaN 7019 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9678 48.336 NaN 246320 35 0 11352 0.261 + 1364 AYPHNLMTF 9 67 555.2577693209265 1108.500985708653 2 555.7589111328125 MULTI HCD FTMS 0 0 0 9673 55804.7109375 0.08366879316267765 -15 0.4065093994140625 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 52.268347100219714 0.028397529699942435 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[NS]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 56.098 0 0 5.0607 5.0607 89.083 0 0 0 21.14393726401687 24.737059521965104 21.14393726401687 14.49092531119419 0 1.3807196863200843 2 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[NS]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QS]|[NT]}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[YT]MAA[YR]S{M(Oxidation (M))|F};[YT]MAA[YR]YA;[YT]V{[CA]|SS}[YR]S{M(Oxidation (M))|F};[YT]V{[CA]|SS}[YR]YA;[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YR]S{M(Oxidation (M))|F};[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YR]YA;[{M(Oxidation (M))|F}T][WP]{I|L}T[C(Carbamidomethyl (C))N]A;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}AA[YR]S{M(Oxidation (M))|F} 5.0607;3.7534;2.5725;2.4328;2.301;2.1612;1.9881;1.8483;1.0276;0.85572 -;-;-;-;-;-;-;-;-;- 285 NaN NaN 120213.4 NaN 7020 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9679 48.339 NaN 460620 35 0 44919 0.261 + 6983 FPVTDAVNKG 10 76 524.2772401262067 1046.5399273192133 2 524.2781372070312 MULTI HCD FTMS 0 0 0 9673 126513.671875 0.41316982434934063 -4 0.10857009887695312 6 Unmodified _FPVTDAVNKG_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 26.268140514670165 0.2654086933305545 2 {I|L}MVESE 6 9 77.401 0 0 7.3959 0 0 0 355.20970793000845 355.20970793000845 55.233871898888154 0 0 0 0 1.774227503252014 1.6989700043360187 0.805462187404089 0 {I|L}MVESE 7.3959 - 322 + NaN NaN 157213 NaN 7021 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9680 48.342 NaN 170000 35 0 14576 0.261 + 24866 RYQDIIHSI 9 56 572.8086998480891 1143.602846762978 2 572.8076171875 MULTI HCD FTMS 0 0 0 9673 37399.3125 0.034936543817852085 19 -0.5698661804199219 7 Unmodified _RYQDIIHSI_ ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF;nc|ENSG00000009954|Q9UIG0-2|BAZ1B 15.248480904072842 0.22861284681709862 2 {I|L}HS{I|L} 4 5 33.8 0 0 2.9556 0 0 675.3315907209 0 675.3315907209 0 11.12395659563255 0 0 0 0.4247425010840047 0 0 0 + {I|L}HS{I|L} 2.9556 + + 152 NaN NaN 135991.8 NaN 7022 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9681 48.346 NaN 186820 35 0 18291 0.261 + -1 RDMEDAQAYQ 10 61 621.7558663545454 1241.4971797758908 2 621.7765502929688 MULTI HCD FTMS 0 0 0 9673 16996.953125 0.13102180518985126 8 -0.24725341796875 8 Oxidation (M) _RDM(Oxidation (M))EDAQAYQ_ REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000461872.6_1_6:152697909-152949466:-|nuORF;REV__nc|ENSG00000131018|Q8NF91-10|SYNE1;REV__nc|ENSG00000131018|Q8NF91-4|SYNE1;REV__nc|ENSG00000131018|Q8NF91-5|SYNE1;REV__nc|ENSG00000131018|Q8NF91-6|SYNE1;REV__nc|ENSG00000131018|Q8NF91-7|SYNE1;REV__SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant 6.2057823575117 0.44245551207394906 2 TTNQ[HS]QN[{M(Oxidation (M))|F}T] 10 -1 47.937 0 0 3.8612 0 0 64.97169471608602 0 64.97169471608602 0 32.1573152140785 0 0 0 0 0 1.305462187404089 0.2742275032520141 TTNQ[HS]QN[{M(Oxidation (M))|F}T] 3.8612 - 223 + NaN NaN 114377.2 NaN 7023 2656 9673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9683 48.351 NaN 189900 35 0 44362 0.327 + -1 SCLIEHQVL 9 48 549.7827208053288 1097.5508886774576 2 549.78271484375 MULTI HCD FTMS 0 0 0 9682 76452.5546875 0.8025657857075958 1 -0.026401519775390625 1 Carbamidomethyl (C) _SC(Carbamidomethyl (C))LIEHQVL_ REV__ENSG00000163349|ENST00000426820|HIPK1;REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 13.90604991867851 0.24021115267848145 2 QV{I|L} 3 -1 40.445 0 0 3.6851 0 0 739.3291841052405 0 739.3291841052405 0 33.455612550363796 0 0 0 1 0 0 0.4247425010840047 QV{I|L} 3.6851 + + 15 NaN NaN 117007.1 NaN 7024 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9684 48.355 NaN 450000 35 0 56524 0.262 + 18754 NAAFKDVAL 9 66 474.7612009771519 947.5078490211038 2 474.7611389160156 MULTI HCD FTMS 0 0 0 9682 229967.125 0.26990747672100335 -3 0.08894729614257812 2 Unmodified _NAAFKDVAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 57.72198328787511 0.020768266150574023 2 {[QG]|[NA]}A{M(Oxidation (M))|F}[WR]A 7 4 62.338 0 0 6.5791 0 0 0 128.0721666644329 128.0721666644329 49.41238011264056 0 0 0 0 1.8807196863200843 1.6989700043360187 0 1.055462187404089 {[QG]|[NA]}A{M(Oxidation (M))|F}[WR]A 6.5791 - 55 NaN NaN 157007.2 NaN 7025 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9685 48.359 NaN 106940 35 0 9039.9 0.261 + 29025 TYERGTYYF 9 46 600.2719557848419 1198.5293586364837 2 600.2720336914062 MULTI HCD FTMS 0 0 0 9682 32068.48046875 0.4591600504131726 2 -0.059299468994140625 3 Unmodified _TYERGTYYF_ ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2 21.536976647645854 0.1742816388551942 2 [YT]E 3 6 29.437 0 0 2.4561 0 0 0 802.3536471002561 802.3536471002561 3.4678748622465605 0 0 0 0 0.5 1.6989700043360187 0 0 + [YT]E 2.4561 + + 12 + NaN NaN 106410.9 NaN 7026 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9686 48.362 NaN 161150 35 0 30153 0.264 + 809 AVGNDRDETSF 11 39 404.1831230113399 1209.5275396342197 3 404.18328857421875 MULTI HCD FTMS 0 0 0 9682 26620.392578125 0.4618764021435696 6 -0.19791412353515625 4 Unmodified _AVGNDRDETSF_ REV__TNR|p.D1284G|1|0.26|ENSG00000116147|chr1:175324462-175324462|T/C|missense_variant 2.735195868890462 0.4069250265843076 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.6936 0 0 1044.4488023068743 0 1044.4488023068743 0 13.494850021680094 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6936 + + 11 + NaN NaN 114840.9 NaN 7027 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9687 48.365 NaN 114210 35 0 20253 0.261 -1 MAAVEKRRQ 9 43 565.8087501521577 1129.6029473711153 2 565.8087768554688 MULTI HCD FTMS 0 0 0 9682 22333.5078125 0.23096991497621092 5 -0.15826034545898438 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MAAVEKRRQ_ ENSG00000141933|ENST00000359315|TPGS1;ENST00000588278.1_1_19:507506-508034:+|nuORF;nc|ENSG00000141933|Q6ZTW0-2|TPGS1 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99745.4 NaN 7028 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9688 48.369 NaN 100530 35 0 27676 0.261 + 8530 HAHLDIEAF 9 37 526.7617656369404 NaN 0 526.7613525390625 PEAK HCD FTMS 0 0 0 9682 31326.87890625 0.03437547428896861 25 -0.7180709838867188 6 Unmodified _HAHLDIEAF_ ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF 15.847184025352803 0.21527282152051216 2 AE{I|L} 3 7 21.114 0 0 2.008 0 0 165.08063358211876 570.2426851861936 735.3233187683124 0 0 0 0 0 0.8807196863200843 0 0 0 AE{I|L} 2.008 - 7 + NaN NaN 98689.4 NaN 7029 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9689 48.372 NaN 146350 35 0 21585 0.261 + 22562 QSLCGPPSL 9 58 451.2240552195562 900.4335575059124 2 451.22320556640625 MULTI HCD FTMS 0 0 0 9682 27722.505859375 0.6818194831574687 -1 0.0296478271484375 7 Unmodified _QSLCGPPSL_ REV__ENST00000530675.5_3_11:102218091-102220814:+|nuORF 6.723162845929126 0.3000504726104499 2 A{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.7989 0 0 664.3177108035671 0 664.3177108035671 0 4.771212547196626 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.7989 - 24 + NaN NaN 103567.9 NaN 7030 2657 9682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9691 48.377 NaN 950460 35 0 203250 0.327 + 31904 VYNNIMRHYL 10 70 441.56056037737994 1321.6598517323398 3 441.5605773925781 MULTI HCD FTMS 0 0 0 9690 297593.5625 0.7295056693956053 2 -0.06255340576171875 1 Unmodified _VYNNIMRHYL_ ENSG00000115267|ENST00000649979|IFIH1 30.7034409873982 0.22608124881558994 2 VYN 3 7 56.242 0 0 4.2554 0 0 0 942.462421432107 942.462421432107 27.825834421237516 0 0 0 0 0.4247425010840047 2 0 0.7302046884880937 + VYN 4.2554 + + 171 + NaN NaN 239554 NaN 7031 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9692 48.381 NaN 404580 35 0 36872 0.261 + 6690 FPNKQGYVL 9 78 533.289789047833 1064.5650251624659 2 533.290283203125 MULTI HCD FTMS 0 0 0 9690 164060.578125 0.1785909377338293 32 -0.9187469482421875 2 Unmodified _FPNKQGYVL_ ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 58.678817012210395 0.019429721296335044 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQ[YG]V{I|L} 9 0 + 58.02 0 0 5.4501 5.4501 85.575 0 0 0 27.451134127217724 24.880814121575327 24.880814121575327 6.262874945799766 0 1.5941876774005248 1.6989700043360187 0.3252574989159953 0.3807196863200844 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQ[YG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]R[YG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG][YG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGKQ[YG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NKQAT{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGK[NS]{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DV]RAT{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[NS]V{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NK[AG]AT{M(Oxidation (M))|F}{I|L} 5.4501;4.8618;4.6872;4.5851;4.5851;4.2855;3.9968;3.5226;3.4689;3.4205 +;-;-;-;-;-;-;-;-;- + 282 NaN NaN 154086.6 NaN 7032 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9693 48.385 NaN 337090 35 0 23304 0.261 + 22410 QPTIERVAL 9 66 513.8003419450654 1025.5861309569307 2 513.8006591796875 MULTI HCD FTMS 0 0 0 9690 144861.140625 1 0 0 3 Unmodified _QPTIERVAL_ ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF 16.149105407346934 0.22083165093524068 2 AEAGVYR{I|L} 8 8 26.112 0 0 2.5461 0 0 148.12132783264957 0 148.12132783264957 0 3.502385003432874 0 0 0 0.3494850021680094 0 0.3054621874040891 0 AEAGVYR{I|L} 2.5461 - 319 + NaN NaN 131931.7 NaN 7033 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9694 48.388 NaN 302500 35 0 43048 0.261 + 21425 PVSREWTL 8 72 494.2666215253124 986.5186901174249 2 494.26727294921875 MULTI HCD FTMS 0 0 0 9690 139133.578125 0.4820812085676098 -2 0.056049346923828125 4 Unmodified _PVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 55.50274090549119 0.09370106398411177 2 [VP]SREWT{I|L} 8 0 + 80.667 0 0 8.1769 8.1769 96.914 0 0 0 24.604093769761874 39.69782205064881 24.604093769761874 51.70432836127297 0 1.3494850021680094 2 0.3807196863200844 0 + + [VP]SREWT{I|L};[{I|L}T]QQ{[{M(Oxidation (M))|F}H]|[RQ]}T{I|L};PV[YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VP];[{I|L}T]QQ[HT]{M(Oxidation (M))|F}{I|L};{I|L}{M(Oxidation (M))|F}QQ[HT]T{I|L};{[WT]|[RM]}[RD][VP]T{I|L};{M(Oxidation (M))|F}{I|L}QQ[HT]T{I|L};{M(Oxidation (M))|F}{I|L}QQQQ[VP];{I|L}{M(Oxidation (M))|F}QQQQ[VP];{[WT]|[RM]}[RD]T[VP]{I|L} 8.1769;2.9358;2.8007;2.1239;1.8058;1.3889;1.2989;1.2718;1.2718;1.1872 +;-;-;-;-;-;-;-;-;- + 308 NaN NaN 149670 NaN 7034 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9695 48.392 NaN 288300 35 0 18056 0.261 + 3442 EFQIYSWK 8 75 550.7742029015915 1099.5338528699829 2 550.774658203125 MULTI HCD FTMS 0 0 0 9690 70279.171875 0.7947339280938888 -1 0.026401519775390625 5 Unmodified _EFQIYSWK_ ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4 30.636539890814138 0.35121444018244025 2 E{M(Oxidation (M))|F}QKE{M(Oxidation (M))|F} 6 5 49.733 0 0 4.5231 0 0 0 288.13474451236567 288.13474451236567 25.040755033212093 0 0 0 0 1.5 0 0.6382104921644451 0.3252574989159953 E{M(Oxidation (M))|F}QKE{M(Oxidation (M))|F} 4.5231 - 559 + NaN NaN 143056.4 NaN 7035 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9696 48.395 NaN 118620 35 0 16684 0.261 + 15425 LPDKSIASL 9 50 472.27648418261214 942.5384154320243 2 472.27691650390625 MULTI HCD FTMS 0 0 0 9690 52866.1640625 0.03436910909075099 14 -0.4349098205566406 6 Unmodified _LPDKSIASL_ ENSG00000089902|ENST00000262241|RCOR1 14.405379775768559 0.2358970535022398 2 {I|L}P 2 7 22.391 0 0 2.3756 0 0 0 729.3776949518186 729.3776949518186 11.906140654642812 0 0 0 0 0.3807196863200844 0 0 0 + {I|L}P 2.3756 + + 18 + NaN NaN 102117 NaN 7036 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9697 48.398 NaN 216750 35 0 33543 0.261 -1 KYMGIPQIRQL 11 50 454.9226181820834 1361.7460251464502 3 454.9237976074219 MULTI HCD FTMS 0 0 0 9690 42726.2578125 0.7118678881446988 -3 0.0823516845703125 7 Oxidation (M) _KYM(Oxidation (M))GIPQIRQL_ ENSG00000141252|ENST00000437048|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53 11.631370582801994 0.35573789852458537 2 {I|L} 1 -1 16.237 0 0 1.1924 0 0 833.4075984880502 412.23066126041255 1245.6382597484628 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.1924 + + 25 + NaN NaN 117123.3 NaN 7037 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9698 48.402 NaN 99872 35 0 9190.1 0.261 + 10388 IMVTNPHY 8 48 487.7419020609276 973.4692511886552 2 487.7423400878906 MULTI HCD FTMS 0 0 0 9690 22019.78125 0.42423840588114037 7 -0.2274932861328125 8 Unmodified _IMVTNPHY_ ENSG00000162723|ENST00000368093|SLAMF9;ENST00000489098.1_1_1:159921578-159923948:-|nuORF;nc|ENSG00000162723|Q96A28-2|SLAMF9 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F}P 2 6 14.693 0 0 1.5093 0 0 0 726.3193453424436 726.3193453424436 7.703037561203843 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P 1.5093 - 48 + NaN NaN 93432.5 NaN 7038 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9699 48.405 NaN 69887 35 0 5043.5 0.261 + 14364 LEDWVARLMA 10 42 602.3113484145557 1202.6081438959113 2 602.769287109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LEDWVARLMA_ ENSG00000187741|ENST00000389301|FANCA;ENST00000563767.1_1_16:89857732-89858395:-|nuORF;nc|ENSG00000187741|O15360-3|FANCA 2.9952420565917617 0.4594494122822477 2 G 1 10 0.088644 0 0 0.007371 0 0 618.3692655773551 524.1851900690061 1142.5544556463612 0 0 0 0 0 0 0 0 0 G 0.007371 - 3 + NaN NaN 121875.5 NaN 7039 2658 9690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9701 48.41 NaN 843920 35 0 119350 0.327 + 24328 RYIANTVEL 9 79 539.7972806644632 1077.5800083957263 2 539.7984619140625 MULTI HCD FTMS 0 0 0 9700 307183.4375 0.49208227644376495 3 -0.09896087646484375 1 Unmodified _RYIANTVEL_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 53.40400417844725 0.026808823219830042 2 QVCTVE{I|L} 7 5 51.579 0 0 4.7866 0 0 287.19575698066564 0 287.19575698066564 0 27.232748047850777 0 0 0 0.805462187404089 0 0.3807196863200844 0.7302046884880937 QVCTVE{I|L} 4.7866 - 669 NaN NaN 205853.9 NaN 7040 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9702 48.414 NaN 451920 35 0 44981 0.261 + 12835 KYFEKQFEL 9 84 616.3217705387356 1230.628988144271 2 616.3216552734375 MULTI HCD FTMS 0 0 0 9700 415386.6875 0.8438383126349488 3 -0.09896087646484375 2 Unmodified _KYFEKQFEL_ ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1 102.5486954659897 0.004158849840221075 2 [YK]{M(Oxidation (M))|F}EKQ{M(Oxidation (M))|F}E{I|L} 9 0 + 78.739 0 0 6.3983 6.3983 87.678 0 0 0 10.202264589233394 24.355991169820392 10.202264589233394 7.583559388717376 0 1.7302046884880937 0 0.805462187404089 0.9559771852360797 + + [YK]{M(Oxidation (M))|F}EKQ{M(Oxidation (M))|F}E{I|L};[YK]{M(Oxidation (M))|F}EKQE{M(Oxidation (M))|F}{I|L};[YK]{M(Oxidation (M))|F}EK[AG]{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]KEKQ{M(Oxidation (M))|F}E{I|L};[YK]{M(Oxidation (M))|F}EK[AG]E{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]YKKQ{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]KEKQE{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]EKKQ{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]KEK[AG]{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]YKKQE{M(Oxidation (M))|F}{I|L} 6.3983;5.782;5.65;5.1758;5.0338;4.7663;4.5595;4.4429;4.4275;4.1501 +;-;-;-;-;-;-;-;-;- + 2720 NaN NaN 160308.9 NaN 7041 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9703 48.418 NaN 37925 35 0 5773.3 0.263 + -1 RVPMPIWG 8 30 486.2622790161776 NaN 0 486.2530212402344 PEAK HCD FTMS 0 0 0 9700 13852.5078125 1 0 0 3 Oxidation (M) _RVPM(Oxidation (M))PIWG_ REV__ENSG00000177992|ENST00000325643|SPATA31E1 2.577480529830294 0.38822285293237185 2 G 1 -1 3.0989 0 0 0.31931 0 0 507.777230296224 402.68015466861567 910.4573849648397 0 0 0 0 0 0 0 0 0 G 0.31931 + + 1 + NaN NaN 90935.9 NaN 7042 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9704 48.421 NaN 190670 35 0 20798 0.261 + 9731 HYAALAHYF 9 66 546.7668131377312 1091.5190733422623 2 546.7570190429688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _HYAALAHYF_ ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2 28.173230860318316 0.11963627304438548 2 HY{M(Oxidation (M))|F} 3 6 26.682 0 0 2.4445 0 0 626.3174915998062 0 626.3174915998062 0 -0.08355938871737578 -0.08355938871737578 0 0 0.5 0 0 0 + HY{M(Oxidation (M))|F} 2.4445 + + 53 NaN NaN 131657.6 NaN 7043 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9705 48.425 NaN 46352 35 0 6546.2 0.261 + 28374 TPDWAERQL 9 35 558.2775358516881 1114.540518770176 2 558.2771606445312 MULTI HCD FTMS 0 0 0 9700 14760.8447265625 0.07188483671645168 14 -0.42832183837890625 5 Unmodified _TPDWAERQL_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 1.4819007175156935 0.3397831423917744 2 A 1 8 6.9897 0 0 0.62714 0 0 499.20648664302604 541.2681978815061 1040.4746845245322 0 0 0 0 0 0 0 0 0 + A 0.62714 + + 2 + NaN NaN 86034.7 NaN 7044 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9706 48.428 NaN 80931 35 0 7808.8 0.261 + -1 TNFWFFFSC 9 44 628.2658878387882 1254.5172227443763 2 628.2622680664062 MULTI HCD FTMS 0 0 0 9700 37592.0625 0.809652323522112 -4 0.1152496337890625 6 Carbamidomethyl (C) _TNFWFFFSC(Carbamidomethyl (C))_ REV__ENST00000445572.5_1_13:25163437-25171624:+|nuORF 1.844237919475145 0.33703635659052655 2 QNT{M(Oxidation (M))|F} 4 -1 29.553 0 0 2.3557 0 0 746.2865467755875 0 746.2865467755875 0 29.552593986562812 0 0 0 0 0 0 0 QNT{M(Oxidation (M))|F} 2.3557 - 8 NaN NaN 92686.2 NaN 7045 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9707 48.431 NaN 181860 35 0 29488 0.264 + 8605 HCFWLTQEF 9 55 404.1831230113399 1209.5275396342197 3 404.1830749511719 MULTI HCD FTMS 0 0 0 9700 23504.900390625 0.4078211391249709 8 -0.25057220458984375 7 Unmodified _HCFWLTQEF_ ENSG00000115548|ENST00000312912|KDM3A;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;ENST00000491383.5_1_2:86716620-86718467:+|nuORF 3.5964929083625545 0.32375295897743744 2 {M(Oxidation (M))|F} 1 8 21.99 0 0 1.818 0 0 1044.4488480832415 0 1044.4488480832415 0 13.037275116073344 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.818 + + 12 + NaN NaN 129702.9 NaN 7046 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9708 48.435 NaN 46602 35 0 4404.6 0.261 + 21979 QESFAEHRSGL 11 37 630.8043823242188 NaN 0 630.8043823242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _QESFAEHRSGL_ ENSG00000115677|ENST00000310931|HDLBP;ENST00000449864.5_3_2:242206025-242206308:-|nuORF;nc|ENSG00000115677|Q00341-2|HDLBP 0.9622753412299311 0.33939044544643376 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99074.3 NaN 7047 2659 9700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9710 48.44 NaN 1124700 35 0 65675 0.327 + 22778 QYKDNIRH 8 106 537.2795073182785 1072.544461703357 2 537.2927856445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _QYKDNIRH_ ENSG00000145391|ENST00000274031|SETD7 36.04419817259434 0.28174663821216267 2 YK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F} 8 7 43.663 0 0 4.071 0 0 128.0688089931794 0 128.0688089931794 0 5.783161130202487 0 0 0 0 0 0 1.6496498648046138 YK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F} 4.071 - 1029 + NaN NaN 265468.9 NaN 7048 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9711 48.444 NaN 809300 35 0 253920 0.261 -1 ESEHSMDTLL 10 69 589.2555829057159 1176.4966128782316 2 589.2561645507812 MULTI HCD FTMS 0 0 0 9709 354552.90625 0.9380492875312133 2 -0.069305419921875 2 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 14.838274106304384 0.3723198072575719 2 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 63.513 0 0 5.3985 0 0 543.1558705060562 0 543.1558705060562 0 38.107346925073955 0 0 0 1.75 0 0.805462187404089 0 {I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 5.3985 - 177 NaN NaN 214020.5 NaN 7049 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9712 48.448 NaN 518470 35 0 62444 0.261 + 34360 YPEGFEIHSM 10 79 613.2633989596794 1224.5122449861587 2 613.2634887695312 MULTI HCD FTMS 0 0 0 9709 290517.65625 0.8418182386186907 -3 0.08895492553710938 3 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 142.0795815696625 3.9736287154477415E-07 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 124.43 0 0 10.162 10.162 97.966 0 0 0 94.53279669292726 13.295671638727029 13.295671638727029 30.234545762264744 0 2.659379381312206 1.6989700043360187 2.146591250700361 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][HT];YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[HT];YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]} 10.162;7.6929;7.5797;7.0777;7.0261;6.7699;6.584;6.2584;6.2397;6.1433 +;-;-;+;-;-;-;-;-;- + 4137 + NaN NaN 170562 NaN 7050 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9713 48.451 NaN 129500 35 0 7712.5 0.261 + 22622 QVGPEEKIAL 10 51 542.3057715001581 1082.5969900671162 2 542.3060302734375 MULTI HCD FTMS 0 0 0 9709 67494.9609375 0.2393920616986002 4 -0.12865066528320312 4 Unmodified _QVGPEEKIAL_ ENSG00000097046|ENST00000234626|CDC7 14.405379775768559 0.37636895476610294 2 RK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}C(Carbamidomethyl (C))[{I|L}A] 7 7 13.02 0 0 1.2027 0 0 177.10193473228975 0 177.10193473228975 0 1.6056038291412733 0 0 0 0.3054621874040891 0 0 0 RK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}C(Carbamidomethyl (C))[{I|L}A] 1.2027 - 59 + NaN NaN 106747.3 NaN 7051 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9714 48.454 NaN 163550 35 0 13119 0.261 + 9782 HYKPTPLYF 9 64 583.3055525579356 1164.596552182671 2 583.3060302734375 MULTI HCD FTMS 0 0 0 9709 73025.4140625 0.05110446627058743 37 -1.0366172790527344 5 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 32.78568957990786 0.09846250359632436 2 {I|L}PY{M(Oxidation (M))|F} 4 6 28.091 0 0 2.4121 0 0 626.3163929669937 0 626.3163929669937 0 8.3985760252164 0 0 0 1 0 0 0 {I|L}PY{M(Oxidation (M))|F} 2.4121 - 79 NaN NaN 111909.7 NaN 7052 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9715 48.458 NaN 168770 35 0 9596.8 0.262 + 4216 EVAQFLTGR 9 60 510.77717291622156 1019.5397928992431 2 510.77734375 MULTI HCD FTMS 0 0 0 9709 30920.283203125 0.2345686843338339 4 -0.12865066528320312 6 Unmodified _EVAQFLTGR_ ENSG00000100418|ENST00000263256|DESI1;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENST00000482612.1_1_22:41999261-42000085:-|nuORF 14.405379775768559 0.2358970535022398 2 {NN|[MP]|[D{I|L}]|[EV]}AQ{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]} 9 0 + 41.55 0 0 4.0754 4.0754 85.688 0 0 0 27.737731077138932 7.147642715192504 7.147642715192504 9.208187539523749 0 0 1.0457574905606752 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}AQ{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}A[AG]{M(Oxidation (M))|F}{I|L}T{[NV]|[RG]} 4.0754;3.1722 +;- + 181 + NaN NaN 116388.5 NaN 7053 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9716 48.461 NaN 122290 35 0 15396 0.261 -1 RYCMQLAQI 9 60 571.2773227390097 1140.5400925448193 2 571.278564453125 MULTI HCD FTMS 0 0 0 9709 33528.79296875 0.5392510758954131 6 -0.18798065185546875 7 Oxidation (M) _RYCM(Oxidation (M))QLAQI_ CON__P02533;ENSG00000186847|ENST00000167586|KRT14 15.847184025352803 0.2234401846867398 2 AQ{I|L} 3 -1 34.693 0 0 3.0418 0 0 810.3508361367112 0 810.3508361367112 0 32.70303756120384 0 0 0 0.4247425010840047 0 0 0.4247425010840047 AQ{I|L} 3.0418 + + 19 NaN NaN 97970.9 NaN 7054 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9717 48.464 NaN 194080 35 0 11423 0.261 + -1 CDFLNWGNTF 10 46 637.2691583719866 1272.523763810773 2 637.268798828125 MULTI HCD FTMS 0 0 0 9709 40864.66015625 0.7082014145949151 -1 0.02965545654296875 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 7.608950283845883 0.4350283211712914 2 QNT{M(Oxidation (M))|F} 4 -1 35.79 0 0 2.8125 0 0 764.2924061505875 0 764.2924061505875 0 31.81031895404267 0 0 0 0.4247425010840047 0 0.5 0 QNT{M(Oxidation (M))|F} 2.8125 - 25 NaN NaN 134555.1 NaN 7055 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9718 48.468 NaN 103880 35 0 9525.3 0.264 -1 DWTRCRKEL 9 48 421.8803652447246 1262.6192663343738 3 421.87274169921875 MULTI HCD FTMS 0 0 0 9709 20234.486328125 0.8397589807716516 4 -0.12865066528320312 9 Carbamidomethyl (C) _DWTRC(Carbamidomethyl (C))RKEL_ CROCC|p.L1854Rfs*2|1|0.12|ENSG00000058453|chr1:16970362-16970375|TGGCTCAGCTGGAA/-|frameshift_variant;ENSG00000058453|ENST00000375541|CROCC;ENST00000466256.6_1_1:17066814-17263353:+|nuORF 7.101721422024254 0.29718071671418667 2 {I|L} 1 -1 18.099 0 0 1.4334 0 0 1131.5246903839816 0 1131.5246903839816 0 1.1092437480817807 0 0 0 0.5 0 0 0 {I|L} 1.4334 + + 11 + NaN NaN 103162 NaN 7056 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9719 48.471 NaN 89065 35 0 16198 0.261 -1 KSTNSFCVPL 10 48 576.790073373034 NaN 0 576.7897338867188 PEAK HCD FTMS 0 0 0 9709 26529.388671875 0.8088317836980616 6 -0.18798065185546875 10 Carbamidomethyl (C) _KSTNSFC(Carbamidomethyl (C))VPL_ ENST00000357546.6_1_2:169926121-169926220:+|nuORF 4.897010918128616 0.3359931263921593 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97006.1 NaN 7057 2660 9709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9721 48.476 NaN 2169600 35 0 119870 0.326 + 34269 YPDRIMNTF 9 116 586.7735938013249 1171.5326346694496 2 586.774169921875 MULTI HCD FTMS 0 0 0 9720 1237295.125 0.36634054245586956 9 -0.27353668212890625 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 220.09862028101273 6.762755077262548E-24 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 120.17 0 0 10.257 10.257 95.986 0 0 0 77.85242543973278 14.09256854528806 14.09256854528806 12.703037561203843 0 2.9489700043360187 1.5228787452803376 2.345278878751137 1.1976212463643423 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}TC(Carbamidomethyl (C))T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F} 10.257;9.173;7.7681;7.7146;7.2978;6.9821;6.5525;6.5118;6.4828;6.2772 +;-;+;-;-;-;-;-;-;- + 13822 + NaN NaN 416981.2 NaN 7058 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9722 48.48 NaN 1184100 35 0 476780 0.264 + 17807 MFNKLHISEI 10 69 411.2225631724128 NaN 0 411.2162170410156 PEAK HCD FTMS 0 0 0 9720 88873.71875 1 0 0 2 Unmodified _MFNKLHISEI_ REV__ENSG00000163029|ENST00000448223|SMC6;REV__nc|ENSG00000163029|Q96SB8-2|SMC6 15.738622578938676 0.3151539585939896 2 E 1 -1 6.7827 0 0 0.82673 0 0 560.2919148196319 128.0717714899047 688.3636863095365 0 0 0 0 0 0 0 0.5 0 E 0.82673 + + 18 + NaN NaN 256972.9 NaN 7059 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9723 48.484 NaN 815030 35 0 45399 0.261 + 34935 YSLLMPLEL 9 76 539.7972806644632 1077.5800083957263 2 540.2962646484375 MULTI HCD FTMS 0 0 0 9720 342219.71875 0.8696607657599064 6 -0.18463897705078125 3 Unmodified _YSLLMPLEL_ REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF;REV__nc|ENSG00000101974|Q8NB49-3|ATP11C 26.88365393820708 0.12808753336095696 2 {I|L}NSVQR{I|L} 7 -1 50.6 0 0 4.6957 0 0 249.09817185499531 0 249.09817185499531 0 19.0625071795742 0 0 0 0.3054621874040891 0 0.9749073637206093 1.2346368802282017 {I|L}NSVQR{I|L} 4.6957 - 784 + NaN NaN 207887 NaN 7060 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9724 48.487 NaN 176520 35 0 40747 0.262 -1 KNLVATFICVF 11 45 437.90901755807886 1310.7052232744365 3 437.90936279296875 MULTI HCD FTMS 0 0 0 9720 25246.458984375 0.17868817790903077 12 -0.36238861083984375 4 Carbamidomethyl (C) _KNLVATFIC(Carbamidomethyl (C))VF_ ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11;PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant 4.715918219556657 0.3982382512160552 2 V{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.8665 0 0 1046.5550900730677 0 1046.5550900730677 0 8.979400086720375 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.8665 + + 9 + NaN NaN 111317.1 NaN 7061 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9725 48.491 NaN 244860 35 0 17900 0.261 + 13102 KYLEMIYSM 9 70 605.2806348417259 1208.5467167502518 2 605.7703857421875 MULTI HCD FTMS 0 0 0 9720 22455.287109375 0.4959856467912741 3 -0.09237289428710938 5 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 43.981846655682396 0.04706587046877104 2 {M(Oxidation (M))|F}{I|L}H{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 8 3 50.162 0 0 4.1506 0 0 136.08219145903928 0 136.08219145903928 0 35.2132064533734 0 0 0 1.8737125054200234 0 1.1237125054200234 0 {M(Oxidation (M))|F}{I|L}H{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.1506 - 228 + NaN NaN 139009.5 NaN 7062 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9726 48.494 NaN 373330 35 0 21172 0.261 -1 MPDLENRVL 9 70 551.7813626914638 1101.5481724497274 2 551.7816772460938 MULTI HCD FTMS 0 0 0 9720 62178.27734375 0.45409111194766544 -4 0.12523269653320312 6 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 27.223235318498237 0.1251536255799991 2 NE{I|L}D[EP] 6 -1 23.809 0 0 2.1614 0 0 386.26524550605626 0 386.26524550605626 0 -0.7515979179677359 -0.7515979179677359 0 0 0.9194451763165201 0 0 0 NE{I|L}D[EP] 2.1614 - 217 NaN NaN 137366.2 NaN 7063 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9727 48.497 NaN 270790 35 0 66068 0.262 -1 TIMVMLFLLVF 11 56 448.25513673208985 1341.7435807964696 3 448.2417297363281 MULTI HCD FTMS 0 0 0 9720 34956.29296875 1 0 0 7 Oxidation (M) _TIM(Oxidation (M))VMLFLLVF_ tr|U7STL1|U7STL1_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01635PE=4SV=1 1.3296431237094175 0.4130893034510334 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2662 0 0 1176.6645840697101 0 1176.6645840697101 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2662 + + 16 + NaN NaN 129107.2 NaN 7064 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9728 48.501 NaN 156500 35 0 14778 0.261 + 22595 QTIQGILER 9 56 529.3039543858547 1056.5933558385093 2 529.8050537109375 MULTI HCD FTMS 0 0 0 9720 26236.4296875 0.5574451358753253 -1 0.03627777099609375 8 Unmodified _QTIQGILER_ ENSG00000047410|ENST00000367478|TPR 32.037481411007896 0.10189719824197178 2 [QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}ER 9 0 + 44.869 0 0 4.2466 4.2466 83.951 0 0 0 7.147642715192504 6.532125137753432 6.532125137753432 6.532125137753432 0 0.5994850021680094 0 0 0 + + [QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}ER;[QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}VW;[QT]{I|L}[AG]{[VA]|[{I|L}G]}{I|L}ER;[QT]{I|L}[AG]{[VA]|[{I|L}G]}{I|L}VW 4.2466;3.6283;3.3751;2.7568 +;-;-;- + 243 + NaN NaN 105874.4 NaN 7065 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9729 48.504 NaN 129260 35 0 7461.2 0.261 + 7125 FRYKVPAEI 9 54 561.8209450271612 1121.6273371211223 2 561.8180541992188 MULTI HCD FTMS 0 0 0 9720 12979.4677734375 0.015243874884627586 24 -0.6783332824707031 9 Unmodified _FRYKVPAEI_ ENSG00000138760|ENST00000264896|SCARB2;nc|ENSG00000138760|Q14108-2|SCARB2 6.2057823575117 0.30397260197431997 2 V{M(Oxidation (M))|F} 2 8 16.454 0 0 1.4669 0 0 857.480469300613 0 857.480469300613 0 0.2557626122369072 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.4669 - 33 + NaN NaN 103280.4 NaN 7066 2661 9720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9731 48.509 NaN 918000 35 0 135720 0.327 + 18755 NAAFKDVAL 9 78 474.7612009771519 947.5078490211038 2 474.7610778808594 MULTI HCD FTMS 0 0 0 9730 604408.125 0.7093808383629737 2 -0.059345245361328125 1 Unmodified _NAAFKDVAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 86.33184430468982 0.004622086694044132 2 {[QG]|[NA]}A{M(Oxidation (M))|F}KDVA{I|L} 9 0 + 98.075 0 0 10.351 10.351 97.304 0 0 0 20.413705284069223 16.478174818886373 16.478174818886373 20.413705284069223 0 1.8807196863200843 1.6989700043360187 0 1.3684151806525389 + + {[QG]|[NA]}A{M(Oxidation (M))|F}KDVA{I|L};QQ{M(Oxidation (M))|F}KDVA{I|L};{[QG]|[NA]}A{M(Oxidation (M))|F}KT[PS]{I|L};{[QG]|[NA]}A{M(Oxidation (M))|F}KT{[TV]|[{I|L}S]}P;QQ{M(Oxidation (M))|F}KT[PS]{I|L};QQ{M(Oxidation (M))|F}KT{[TV]|[{I|L}S]}P 10.351;8.1963;8.1149;7.0084;5.9604;4.8539 +;-;-;-;-;- + 284 NaN NaN 224194.7 NaN 7067 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9732 48.513 NaN 606770 35 0 64320 0.261 + 14331 LDPSFERAI 9 70 524.2772401262067 1046.5399273192133 2 524.277099609375 MULTI HCD FTMS 0 0 0 9730 297075.28125 0.9701919164425759 2 -0.059345245361328125 2 Unmodified _LDPSFERAI_ REV__ENSG00000061273|ENST00000080059|HDAC7;REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF;REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-2|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-4|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-6|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-7|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-8|HDAC7;REV__nc|ENSG00000061273|Q8WUI4-9|HDAC7;REV__nc|ENSG00000061273|Q8WUI4|HDAC7 38.175570920033316 0.07371992880350783 2 {I|L}MVESEA 7 -1 87.388 0 0 8.3502 0 0 0 284.17231165103755 284.17231165103755 65.96146996841902 0 0 0 0 2.1237125054200234 1.6989700043360187 1.1861818737241734 0 {I|L}MVESEA 8.3502 - 582 + NaN NaN 194710.5 NaN 7068 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9733 48.517 NaN 492810 35 0 55965 0.261 + 35327 YWMHVQNTF 9 62 621.2742773631014 1240.5340017930027 2 621.2742919921875 MULTI HCD FTMS 0 0 0 9730 280936.375 0.8828955633485505 2 -0.059345245361328125 3 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 144.35026110057638 1.4798765981150827E-05 2 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 76.339 0 0 6.1537 6.1537 88.787 0 0 0 57.5262903823031 12.063631030611575 12.063631030611575 9.208187539523749 0 2.742992819099939 1.5228787452803376 1.6307196863200843 0.9802046884880938 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F} 6.1537;5.4114;5.1492 +;-;- + 505 + NaN NaN 158097.8 NaN 7069 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9734 48.52 NaN 1043900 35 0 373820 0.264 + 4831 EYYDKHFTEF 10 64 460.2032510317168 1377.5879236953504 3 460.2030944824219 MULTI HCD FTMS 0 0 0 9730 322499.25 0.9047672401957458 -1 0.03302764892578125 4 Unmodified _EYYDKHFTEF_ ENSG00000114573|ENST00000273398|ATP6V1A;nc|ENSG00000114573|P38606-2|ATP6V1A 15.738622578938676 0.3638982514236938 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 8 21.198 0 0 1.5388 0 0 1065.4559281388003 0 1065.4559281388003 0 10.955612550363796 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.5388 - 56 NaN NaN 250807.3 NaN 7070 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9735 48.524 NaN 501240 35 0 32196 0.261 + 1365 AYPHNLMTF 9 79 555.2577693209265 1108.500985708653 2 555.2576293945312 MULTI HCD FTMS 0 0 0 9730 172597.890625 0.1585817242206224 -9 0.27685546875 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 111.28704002717404 0.0027322905094575235 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 84.267 0 0 7.6018 7.6018 91.372 0 0 0 24.76203644159419 50.95316201469579 24.76203644159419 9.208187539523749 0 2.2728787452803374 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}N{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};[YT]VYN[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};[YT]VY[C(Carbamidomethyl (C))R]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F} 7.6018;6.7712;6.2315;4.8398;4.2667;4.2286;4.2194;4.208;4.1632;4.1426 -;-;-;-;-;-;-;-;-;- 2519 NaN NaN 152973.1 NaN 7071 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9736 48.527 NaN 822670 35 0 157650 0.262 + 25482 SFDSTVRL 8 56 462.74290359127696 923.4712542493539 2 462.7427673339844 MULTI HCD FTMS 0 0 0 9730 223821.09375 0.4354746448816913 -3 0.09896087646484375 6 Unmodified _SFDSTVRL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 75.76082778847304 0.023045096181382205 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L} 8 0 + 86.648 0 0 9.3829 9.3829 94.47 0 0 0 20.34318117920506 68.06479076621045 20.34318117920506 9.262137858390815 0 2.3494850021680094 2 1.1549471895720984 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTV[VG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSKKVN 9.3829;8.3799;5.722 +;-;- + 98 NaN NaN 204158.2 NaN 7072 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9737 48.53 NaN 442590 35 0 62561 0.261 + 14091 KYWTLNEF 8 67 550.7742029015915 1099.5338528699829 2 550.7852172851562 MULTI HCD FTMS 0 0 0 9730 28022.2890625 0.3168828440442269 3 -0.09563446044921875 7 Unmodified _KYWTLNEF_ REV__ENSG00000128052|ENST00000263923|KDR;REV__nc|ENSG00000128052|P35968-2|KDR;REV__nc|ENSG00000128052|P35968-3|KDR 14.838274106304384 0.4846187982323419 2 AKV{I|L}SNE{M(Oxidation (M))|F} 8 -1 73.173 0 0 6.6549 0 0 193.05303913756796 0 193.05303913756796 0 27.76715677224047 0 0 0 0.9247425010840047 0 1.066901560044258 1.079689690656103 AKV{I|L}SNE{M(Oxidation (M))|F} 6.6549 - 496 + NaN NaN 147639.4 NaN 7073 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9738 48.534 NaN 250410 35 0 67675 0.261 + 26187 SPQEDGVEL 9 57 487.22729176798026 972.4400306027605 2 487.2269287109375 MULTI HCD FTMS 0 0 0 9730 117401.6640625 0.7423622327776893 -3 0.09896087646484375 8 Unmodified _SPQEDGVEL_ ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A 29.84058131909904 0.11198220037953927 2 DRE{I|L} 4 6 46.983 0 0 4.8314 0 0 441.1851063459 0 441.1851063459 0 36.524947271955455 0 0 0 1.2302046884880937 0 0.4247425010840047 0 DRE{I|L} 4.8314 - 42 NaN NaN 123481.1 NaN 7074 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9739 48.537 NaN 114700 35 0 12415 0.261 -1 HYDYIDVEM 9 41 600.7474952564133 1199.4804375796266 2 600.7477416992188 MULTI HCD FTMS 0 0 0 9730 62557.25390625 0.8790295021024157 1 -0.039653778076171875 9 Oxidation (M) _HYDYIDVEM(Oxidation (M))_ ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1 30.636539890814138 0.10832830463492794 2 DVE{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.9132 0 0 691.2961519785756 0 691.2961519785756 0 38.979400086720375 0 0 0 1.5 0 0 0 DVE{M(Oxidation (M))|F} 3.9132 + + 53 NaN NaN 99795.6 NaN 7075 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9740 48.54 NaN 225320 35 0 60620 0.262 + 14201 LAQHLSVLD 9 63 498.27963391245186 994.5447148917037 2 498.2800598144531 MULTI HCD FTMS 0 0 0 9730 34135.55859375 0.3046379966040023 4 -0.11867523193359375 10 Unmodified _LAQHLSVLD_ REV__ENSG00000158161|ENST00000373871|EYA3;REV__nc|ENSG00000158161|Q99504-2|EYA3;REV__nc|ENSG00000158161|Q99504-4|EYA3;REV__nc|ENSG00000158161|Q99504-5|EYA3 10.823927491677226 0.26684000660059787 2 [{I|L}A]V 3 -1 27.932 0 0 2.8085 0 0 0 708.3313796958146 708.3313796958146 7.297414734659711 0 0 0 0 0.3494850021680094 1.3979400086720375 0 0 [{I|L}A]V 2.8085 - 61 + NaN NaN 115729.4 NaN 7076 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9741 48.544 NaN 229860 35 0 19039 0.261 + 22596 QTIQGILER 9 64 529.3039543858547 1056.5933558385093 2 529.3034057617188 MULTI HCD FTMS 0 0 0 9730 61985.046875 0.7008342168748344 -1 0.03302764892578125 11 Unmodified _QTIQGILER_ ENSG00000047410|ENST00000367478|TPR 17.44264345198275 0.2096557692338702 2 [QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}ER 9 0 + 40.92 0 0 3.8728 3.8728 85.448 0 0 0 19.13824076106578 14.09256854528806 14.09256854528806 9.208187539523749 0 0.3807196863200844 0 0 0 + + [QT]{I|L}Q{[VA]|[{I|L}G]}{I|L}ER;[QT]{I|L}[AG]{[VA]|[{I|L}G]}{I|L}ER;[QT]K[KT]Q{I|L}[NP];[QT]K[KT][AG]{I|L}[NP];[QT]{I|L}Q{[VA]|[{I|L}G]}[KA][QA] 3.8728;3.0013;2.496;1.6245;1.3017 +;-;-;-;- + 110 + NaN NaN 122309.4 NaN 7077 2662 9730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9743 48.549 NaN 220740 35 0 32205 0.327 + 21426 PVSREWTL 8 58 494.2666215253124 986.5186901174249 2 494.2666015625 MULTI HCD FTMS 0 0 0 9742 144834.53125 0.5018343293420798 3 -0.07902145385742188 1 Unmodified _PVSREWTL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 38.175570920033316 0.25436662042464897 2 PV 2 6 41.766 0 0 4.2337 0 0 0 787.3744926028788 787.3744926028788 0.5803717656404217 0 0 0 0 0.3807196863200844 2 0 0 + PV 4.2337 + + 69 + NaN NaN 140304.7 NaN 7078 2663 9742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9744 48.553 NaN 419640 35 0 54822 0.261 + 566 APEEHPVLL 9 79 502.77415335255756 1003.5337537719151 2 502.7743835449219 MULTI HCD FTMS 0 0 0 9742 124950.625 0.0013379258062764222 89 -2.4434661865234375 2 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 26.88365393820708 0.12808753336095696 2 {I|L}{I|L} 2 7 25.217 0 0 2.5128 0 0 759.3545101328028 0 759.3545101328028 0 7.257724967479859 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.5128 + + 43 NaN NaN 147199.7 NaN 7079 2663 9742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9745 48.557 NaN 382300 35 0 25588 0.261 + 15685 LPEPNHVML 9 92 533.2740317998642 1064.5335106665284 2 533.2900390625 MULTI HCD FTMS 0 0 0 9742 106447.0234375 0.8082930063401188 -3 0.10895919799804688 3 Oxidation (M) _LPEPNHVM(Oxidation (M))L_ ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2;ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2 51.629811660486645 0.02929079705179888 2 {I|L}PE[NP]HV{I|L}{M(Oxidation (M))|F} 9 2 + 72.82 0 0 6.8406 6.8406 91.155 0 0 0 50.43284618261944 12.252684618815088 12.252684618815088 11.020599913279625 0 2.024227503252014 1.2218487496163564 0.6237125054200234 0 {I|L}PE[NP]HV{I|L}{M(Oxidation (M))|F};{I|L}PE[NP]H{I|L}V{M(Oxidation (M))|F};{I|L}PE[NP]H{M(Oxidation (M))|F}V{I|L};{I|L}PE[HM][QP]T{I|L};TY[KS]AHV{I|L}{M(Oxidation (M))|F};TY[KS]AH{I|L}V{M(Oxidation (M))|F};TY[KS]AH{M(Oxidation (M))|F}V{I|L};[YT]{I|L}HA[KS]V{M(Oxidation (M))|F} 6.8406;5.8053;5.4033;3.0691;2.5503;1.5151;1.1131;0.51827 -;-;-;-;-;-;-;- 585 + NaN NaN 149192.4 NaN 7080 2663 9742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9746 48.56 NaN 384250 35 0 27989 0.261 + 5665 FNVTAKTK 8 85 454.76237418390815 NaN 0 454.75311279296875 PEAK HCD FTMS 0 0 0 9742 4711.41064453125 0.4420323290721139 -1 0.039653778076171875 4 Unmodified _FNVTAKTK_ REV__ENSG00000163629|ENST00000411767|PTPN13;REV__nc|ENSG00000163629|Q12923-2|PTPN13;REV__nc|ENSG00000163629|Q12923-3|PTPN13;REV__nc|ENSG00000163629|Q12923-4|PTPN13 5.230669730166228 0.38822285293237185 2 PQ{I|L} 3 -1 6.3123 0 0 0.69556 0 0 154.06184880468794 412.23166834049067 566.2935171451786 0 0 0 0 0 0 0 0 0.25 PQ{I|L} 0.69556 - 43 + NaN NaN 141278.4 NaN 7081 2663 9742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9747 48.563 NaN 176720 35 0 13146 0.261 + 8667 HFIAEHYMF 9 58 605.7705405955054 1209.5265282578107 2 606.2731323242188 MULTI HCD FTMS 0 0 0 9742 38815.19140625 0.2678106819729336 12 -0.3423042297363281 5 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 48.345845343767074 0.03388484103555672 2 H{M(Oxidation (M))|F}{I|L} 3 6 28.188 0 0 2.3305 0 0 0 809.2923586808075 809.2923586808075 6.7609125905568135 0 0 0 0 0.5 0 0 0 + H{M(Oxidation (M))|F}{I|L} 2.3305 + + 49 + NaN NaN 120637 NaN 7082 2663 9742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9749 48.568 NaN 1475900 35 0 95810 0.327 + 13042 KYKGIFNGF 9 106 537.2925201525588 1072.5704873719176 2 537.292724609375 MULTI HCD FTMS 0 0 0 9748 919698.75 0.8313750260596018 2 -0.059329986572265625 1 Unmodified _KYKGIFNGF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 187.92953380467262 5.336922440765807E-13 2 KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F} 9 0 + 84.355 0 0 7.8647 7.8647 90.785 0 0 0 8.711579261822465 8.711579261822465 8.711579261822465 8.711579261822465 0 2.594187677400525 0 0 1.6808845489566888 + + KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F};[YK]K{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F};[YK]K{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGG{M(Oxidation (M))|F};KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGG{M(Oxidation (M))|F};[YK]{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}NG{M(Oxidation (M))|F};KYK{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KS]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KS]K{M(Oxidation (M))|F}NG{M(Oxidation (M))|F};[YK]{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}GGG{M(Oxidation (M))|F};[YK]K{[VA]|[{I|L}G]}G{[CT]|[{M(Oxidation (M))|F}G]}G{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KS]K{M(Oxidation (M))|F}GGG{M(Oxidation (M))|F} 7.8647;7.0525;6.194;6.0788;5.7081;5.0595;4.9494;4.8496;4.5012;4.0909 +;+;-;-;-;-;-;-;-;- + 1188 + NaN NaN 313700.7 NaN 7083 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9750 48.573 NaN 712780 35 0 200090 0.262 + 35979 YYVTELTHRI 10 58 432.2309852644564 1293.6711263935692 3 432.2309875488281 MULTI HCD FTMS 0 0 0 9748 206582.71875 0.6335707090112443 -1 0.01969146728515625 2 Unmodified _YYVTELTHRI_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 19.986897341741983 0.32416132266773673 2 YY{[TV]|[{I|L}S]}E{I|L} 6 4 56.911 0 0 4.3992 0 0 0 522.2793277209865 522.2793277209865 49.921525057367404 0 0 0 0 0.4247425010840047 2 0.4247425010840047 0 + YY{[TV]|[{I|L}S]}E{I|L} 4.3992 + + 43 + NaN NaN 196701.8 NaN 7084 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9751 48.576 NaN 75525 35 0 7881.2 0.261 + 12836 KYFEKQFEL 9 42 616.3217705387356 1230.628988144271 2 616.3213500976562 MULTI HCD FTMS 0 0 0 9748 51459.046875 0.10453660791621477 8 -0.24370574951171875 3 Unmodified _KYFEKQFEL_ ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1 8.751783647060863 0.2846720163477994 2 KY{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}M 7 4 39.685 0 0 3.2248 0 0 0 286.1413668268188 286.1413668268188 18.71600731282193 0 0 0 0 0 0 0 0 KY{M(Oxidation (M))|F}PK{M(Oxidation (M))|F}M 3.2248 - 69 + NaN NaN 94600.5 NaN 7085 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9752 48.58 NaN 180550 35 0 27915 0.261 + 26286 SRIQPCLLHH 10 48 602.3263868108835 NaN 0 602.3115234375 PEAK HCD FTMS 0 0 0 9748 10976.41796875 1 0 0 4 Unmodified _SRIQPCLLHH_ REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF 1.844237919475145 0.33860587697544825 2 P{I|L}EEHY 6 -1 26.631 0 0 2.2144 0 0 113.11484591275764 318.1573580377563 431.2722039505139 0 0 0 0 0 0 0 0 0 P{I|L}EEHY 2.2144 - 90 + NaN NaN 109797.5 NaN 7086 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9753 48.583 NaN 159880 35 0 17321 0.261 + 35791 YYNKVSTVF 9 59 560.7874977164173 1119.5604424996345 2 560.7872314453125 MULTI HCD FTMS 0 0 0 9748 50385.72265625 0.6406643391897738 1 -0.036289215087890625 5 Unmodified _YYNKVSTVF_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 53.832793166522166 0.026208976789938845 2 YY{[QN]|[E{I|L}]|[KN]}VSTV{M(Oxidation (M))|F} 9 0 + 76.705 0 0 6.8513 6.8513 95.17 0 0 0 25.915149811213496 72.10077508221467 25.915149811213496 76.70486885197654 0 1.610924374808178 2 0.7742275032520141 0 + + YY{[QN]|[E{I|L}]|[KN]}VSTV{M(Oxidation (M))|F} 6.8513 + + 39 NaN NaN 106539 NaN 7087 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9754 48.586 NaN 427700 35 0 74306 0.261 + 14197 LAPHLHPVL 9 68 498.80389631642225 995.5932396996445 2 498.8037414550781 MULTI HCD FTMS 0 0 0 9748 71275.515625 0.8529898136931213 -5 0.15830612182617188 6 Unmodified _LAPHLHPVL_ REV__ENST00000309050.9_2_12:110479436-110479697:-|nuORF 5.230669730166228 0.3113646817964458 2 {M(Oxidation (M))|F}GPD[TP]{M(Oxidation (M))|F} 7 -1 20.657 0 0 2.0748 0 0 216.28118022874452 0 216.28118022874452 0 9.419468232557826 0 0 0 0 0 0.7134679910804405 0 {M(Oxidation (M))|F}GPD[TP]{M(Oxidation (M))|F} 2.0748 - 189 + NaN NaN 149332.2 NaN 7088 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9755 48.59 NaN 183130 35 0 34796 0.261 + 31905 VYNNIMRHYL 10 38 441.56056037737994 1321.6598517323398 3 441.5604248046875 MULTI HCD FTMS 0 0 0 9748 33385.00390625 0.08183829454443863 8 -0.24370574951171875 7 Unmodified _VYNNIMRHYL_ ENSG00000115267|ENST00000649979|IFIH1 9.5439744041441 0.42184090036563754 2 VY 2 8 45.217 0 0 3.4212 0 0 0 1056.5045540038002 1056.5045540038002 22.9762136177448 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.4212 + + 23 + NaN NaN 121861.4 NaN 7089 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9756 48.593 NaN 161670 35 0 13293 0.261 + 33780 YLGEKTFSF 9 72 546.2740584687207 1090.5335640042413 2 546.2741088867188 MULTI HCD FTMS 0 0 0 9748 40286.80078125 0.7811367381870293 1 -0.036289215087890625 8 Unmodified _YLGEKTFSF_ nc|ENSG00000203808|Q5T3Y7|BVES-AS1 14.838274106304384 0.23215694253501695 2 [Y{I|L}]W 3 7 30.062 0 0 2.7566 0 0 0 625.292763676595 625.292763676595 13.608018480247779 0 0 0 0 0.5 2 0 0 [Y{I|L}]W 2.7566 - 70 NaN NaN 111105.7 NaN 7090 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9757 48.596 NaN 60099 35 0 4526.5 0.261 -1 MTYRFCSQF 9 34 628.2658878387882 1254.5172227443763 2 628.26318359375 MULTI HCD FTMS 0 0 0 9748 43669.68359375 0.9405512344302775 1 -0.036289215087890625 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))TYRFC(Carbamidomethyl (C))SQF_ ENSG00000155511|ENST00000285900|GRIA1;ENST00000481559.6_1_5:152869375-153085697:+|nuORF;nc|ENSG00000155511|P42261-2|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1 1.4819007175156935 0.3397831423917744 2 HQ{[QS]|[NT]}{M(Oxidation (M))|F} 5 -1 22.218 0 0 1.7711 0 0 609.2374134748062 0 609.2374134748062 0 21.505149978319903 0 0 0 0 0 0 0 HQ{[QS]|[NT]}{M(Oxidation (M))|F} 1.7711 - 7 NaN NaN 89371.8 NaN 7091 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9758 48.6 NaN 99797 35 0 8323.1 0.261 + 10710 IPYRYSDEL 9 48 578.287649669007 1154.560746404814 2 578.287353515625 MULTI HCD FTMS 0 0 0 9748 12911.359375 0.33925884443911625 2 -0.059329986572265625 10 Unmodified _IPYRYSDEL_ ENSG00000117650|ENST00000366999|NEK2;nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-3|NEK2;nc|ENSG00000117650|P51955-4|NEK2 15.248480904072842 0.22861284681709862 2 {I|L}PY 3 6 25.93 0 0 2.2459 0 0 0 778.3453463190061 778.3453463190061 14.938938501671451 0 0 0 0 0.4247425010840047 0 0 0 + {I|L}PY 2.2459 + + 16 + NaN NaN 107016.2 NaN 7092 2664 9748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9760 48.605 NaN 545940 35 0 176530 0.327 -1 0 58 589.2555829057159 1176.4966128782316 2 589.256103515625 MULTI HCD FTMS 0 0 0 9759 242697.109375 0.6421096725535689 7 -0.20741653442382812 1 NaN NaN 2 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 50.802 0 0 4.3181 0 0 496.218553611525 0 496.218553611525 0 44.34833115752497 0 0 0 1 0 0.7614393726401688 0 C(Carbamidomethyl (C))E{M(Oxidation (M))|F}{I|L}{I|L} 4.3181 - 52 NaN NaN 169729 NaN 7093 2665 9759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9761 48.609 NaN 439910 35 0 57795 0.261 + 34361 YPEGFEIHSM 10 72 613.2633989596794 1224.5122449861587 2 613.2632446289062 MULTI HCD FTMS 0 0 0 9759 246921.25 0.7154911492665099 2 -0.05597686767578125 2 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 118.0683919894846 4.123279217187735E-05 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 118.24 0 0 9.6563 9.6563 97.733 0 0 0 97.3514532483668 14.176127934005436 14.176127934005436 32.0609971201948 0 2.7034021960761265 1.6989700043360187 1.9604093769761874 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPW{M(Oxidation (M))|F}{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]} 9.6563;7.038;7.0173;6.9819;6.7699;5.9741;5.9554;5.9391;5.7975;5.6053 +;-;+;-;-;-;-;-;-;- + 1838 + NaN NaN 154172.2 NaN 7094 2665 9759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9762 48.613 NaN 1415600 35 0 208670 0.264 + 8288 GVTIEEAI 8 74 416.22785938384123 NaN 0 416.220458984375 PEAK HCD FTMS 0 0 0 9759 15354.283203125 0.5117215879018687 2 -0.05597686767578125 3 Unmodified _GVTIEEAI_ REV__ENSG00000062598|ENST00000290246|ELMO2;REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2 10.183394434864962 0.38822285293237185 2 {M(Oxidation (M))|F}KEV 4 -1 24.24 0 0 2.919 0 0 53.07206793716029 271.0721717568937 324.14423969405397 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}KEV 2.919 - 67 + NaN NaN 299039.1 NaN 7095 2665 9759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9763 48.616 NaN 153210 35 0 15681 0.261 -1 KYLEMIYSM 9 49 605.2806348417259 1208.5467167502518 2 605.2803344726562 MULTI HCD FTMS 0 0 0 9759 58481.3203125 0.7694785590447852 7 -0.20741653442382812 4 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 2 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 52.568 0 0 4.3497 0 0 404.2428150861344 0 404.2428150861344 0 41.59887825920684 0 0 0 2.079689690656103 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.3497 + + 91 NaN NaN 102964.6 NaN 7096 2665 9759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9764 48.619 NaN 150190 35 0 14559 0.261 + 34749 YPYEHSYGL 9 54 564.7533431605059 1127.4921333878117 2 564.7533569335938 MULTI HCD FTMS 0 0 0 9759 73075.8671875 0.4868140310862794 -4 0.128662109375 5 Unmodified _YPYEHSYGL_ ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2 48.345845343767074 0.03388484103555672 2 YP 2 7 41.766 0 0 3.7043 0 0 0 864.3552367135146 864.3552367135146 -1.4093282777197658 0 -1.4093282777197658 0 0 0.3807196863200844 1.6989700043360187 0 0 + YP 3.7043 + + 29 + NaN NaN 109940.3 NaN 7097 2665 9759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9765 48.623 NaN 85126 35 0 7475.3 0.262 -1 MPDLPEKL 8 54 479.7493489352233 957.4841449372466 2 479.74871826171875 MULTI HCD FTMS 0 0 0 9759 43478.83203125 0.1931708119803664 24 -0.668304443359375 6 Oxidation (M) _M(Oxidation (M))PDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 27.628801355627647 0.38985241877747906 2 K{I|L} 2 -1 25.217 0 0 2.6336 0 0 698.2941240036542 0 698.2941240036542 0 10.4794656189555 0 0 0 0.4247425010840047 0 0 0 K{I|L} 2.6336 + + 22 NaN NaN 90501.2 NaN 7098 2665 9759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9767 48.628 NaN 1346000 35 0 78668 0.327 + 34270 YPDRIMNTF 9 107 586.7735938013249 1171.5326346694496 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9766 782342.8125 0.2316374521541097 14 -0.3885498046875 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 179.28349886687624 1.1259799814826369E-12 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 117.82 0 0 10.057 10.057 95.776 0 0 0 72.4819542181159 14.09256854528806 14.09256854528806 12.460762528683716 0 3.1989700043360187 1.6989700043360187 1.7605742396127921 1.200679860468595 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 10.057;8.9933;8.7619;8.2442;7.9759;7.6878;7.4913;7.4582;7.1434;6.9018 +;-;+;-;-;-;-;-;-;- + 8755 + NaN NaN 289207 NaN 7099 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9768 48.632 NaN 593950 35 0 156790 0.262 + 9961 IEGLSHEVI 9 63 498.77171044854265 995.5288679638853 2 498.77166748046875 MULTI HCD FTMS 0 0 0 9766 185127.03125 0.2991659502384009 -4 0.11867523193359375 2 Unmodified _IEGLSHEVI_ ENSG00000179051|ENST00000375436|RCC2 16.942295170755138 0.21397866736869717 2 V{I|L} 2 7 25.969 0 0 2.6086 0 0 765.3654398252817 0 765.3654398252817 0 10.484550065040281 0 0 0 0.5 0 0 0 + V{I|L} 2.6086 + + 120 NaN NaN 183359.2 NaN 7100 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9769 48.636 NaN 495570 35 0 35844 0.261 + 15686 LPEPNHVML 9 99 533.2740317998642 1064.5335106665284 2 533.2739868164062 MULTI HCD FTMS 0 0 0 9766 131693.609375 1 0 0 3 Oxidation (M) _LPEPNHVM(Oxidation (M))L_ ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2;ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2 51.629811660486645 0.02929079705179888 2 {I|L}PE[NP]H{M(Oxidation (M))|F}V{I|L} 9 2 + 50.229 0 0 4.7184 4.7184 90.626 0 0 0 25.280375430842454 0.470289513353066 0.470289513353066 37.073259432077556 0 1.416386562212267 1.154901959985743 0.6549471895720985 0.2614393726401688 {I|L}PE[NP]H{M(Oxidation (M))|F}V{I|L};[{I|L}P]E{I|L}[PS][C(Carbamidomethyl (C))H]{I|L};[EP]{I|L}{I|L}[PS][C(Carbamidomethyl (C))H]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[HS][KA]{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PT{M(Oxidation (M))|F}D{[QV]|[N{I|L}]|[RA]|[KV]}V{I|L} 4.7184;1.2358;0.98911;0.90755;0.44988 -;-;-;-;- 785 + NaN NaN 176691.3 NaN 7101 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9770 48.639 NaN 429230 35 0 38843 0.261 + 12896 KYGALVNNF 9 80 513.27438319081 1024.53421344842 2 513.2743530273438 MULTI HCD FTMS 0 0 0 9766 114273.265625 0.41328309168654115 -2 0.059329986572265625 4 Unmodified _KYGALVNNF_ ENSG00000117481|ENST00000474844|NSUN4;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;ENST00000495427.1_2_1:46810505-46812688:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant 71.92227651296345 0.008466197542043549 2 [YK]Q{I|L}VNN{M(Oxidation (M))|F} 8 2 [YK] + + 71.49 3.7236 1.2789 6.9778 6.9778 65.596 0 0 0 0 44.015318870489466 0 0 0 2.805462187404089 0 0 1.055462187404089 [YK]Q{I|L}VNN{M(Oxidation (M))|F} 6.9778 - 708 + NaN NaN 151583.7 NaN 7102 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9771 48.642 NaN 216260 35 0 13766 0.261 + 34936 YSLLMPLEL 9 56 539.7972806644632 1077.5800083957263 2 540.295654296875 MULTI HCD FTMS 0 0 0 9766 74584.90625 0.18953778268659693 11 -0.3154792785644531 5 Unmodified _YSLLMPLEL_ REV__ENST00000450801.1_1_X:138811061-138819898:-|nuORF;REV__nc|ENSG00000101974|Q8NB49-3|ATP11C 20.453626601364224 0.18364154288633264 2 {I|L}NSVQR{I|L} 7 -1 35.991 0 0 3.34 0 0 249.09976604100274 0 249.09976604100274 0 11.527128886508677 0 0 0 0.4247425010840047 0 0.4247425010840047 0.3807196863200844 {I|L}NSVQR{I|L} 3.34 - 175 + NaN NaN 124590 NaN 7103 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9772 48.646 NaN 137050 35 0 13033 0.261 + 15871 LPLEEHYRF 9 47 602.3113484145557 1202.6081438959113 2 602.3117065429688 MULTI HCD FTMS 0 0 0 9766 59541.01953125 0.7162356863297177 3 -0.09222030639648438 6 Unmodified _LPLEEHYRF_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000013016|ENST00000322054|EHD3;ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1;nc|ENSG00000013016|Q9NZN3-2|EHD3 13.614867670302875 0.2427269026982664 2 {I|L}P{I|L}EEH 6 3 32.484 0 0 2.7012 0 0 0 481.22007166080317 481.22007166080317 23.438872969436325 0 0 0 0 0 0 0 0 + {I|L}P{I|L}EEH 2.7012 + + 59 + NaN NaN 105972.2 NaN 7104 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9773 48.649 NaN 472580 35 0 55040 0.261 + 4796 EYVEKFYRI 9 68 623.827069824236 1245.639586715272 2 623.8268432617188 MULTI HCD FTMS 0 0 0 9766 122795.0859375 0.22995832365284127 -3 0.07902145385742188 7 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 94.90867108109511 0.004397340885530348 2 EYVEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 91.408 0 0 7.3383 7.3383 92.369 0 0 0 60.970135545478925 10.78128605649718 10.78128605649718 12.212052751702146 0 2.094187677400525 1.5228787452803376 0.4247425010840047 0.23965182871044374 + + EYVEK{M(Oxidation (M))|F}YR{I|L};EYVEK{M(Oxidation (M))|F}{I|L}[YR];EYVEK{I|L}{M(Oxidation (M))|F}[YR];EYV{I|L}[SG]{M(Oxidation (M))|F}YR{I|L};EYV{I|L}{M(Oxidation (M))|F}[SG]YR{I|L};{I|L}DYEK{M(Oxidation (M))|F}YR{I|L};EYV{I|L}[YQ]YR{I|L};EYV{I|L}[SG]{M(Oxidation (M))|F}{I|L}[YR];EYV{I|L}[SG]{I|L}{M(Oxidation (M))|F}[YR];EYV{I|L}{M(Oxidation (M))|F}[SG]{I|L}[YR] 7.3383;6.3579;5.8745;5.6365;5.0754;4.9058;4.7711;4.6561;4.1728;4.095 +;-;-;-;-;-;-;-;-;- + 373 + NaN NaN 157349.6 NaN 7105 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9774 48.652 NaN 146980 35 0 12854 0.261 + 26699 SYAQYVHNL 9 54 547.767307559619 1093.5200621860379 2 547.7671508789062 MULTI HCD FTMS 0 0 0 9766 56426.1328125 0.9905382075875371 -1 0.023040771484375 8 Unmodified _SYAQYVHNL_ ENSG00000175581|ENST00000310614|MRPL48;ENST00000543374.1_1_11:73555872-73556061:+|nuORF;ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48 34.93206674587334 0.08860942999206235 2 VYQA[MT] 6 7 49.798 0 0 4.554 0 0 382.19563491035314 0 382.19563491035314 0 35.19438623093008 0 0 0 2.138210492164445 0 0 0 VYQA[MT] 4.554 - 112 NaN NaN 103040 NaN 7106 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9775 48.656 NaN 139560 35 0 17354 0.261 + 26510 SVINPGAIYR 10 56 545.3061390466555 1088.597725160111 2 545.3065795898438 MULTI HCD FTMS 0 0 0 9766 51684.82421875 1 0 0 9 Unmodified _SVINPGAIYR_ ENSG00000115232|ENST00000397033|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4 24.990960013464015 0.27735500881591096 2 W{I|L}N 3 8 38.812 0 0 3.5653 0 0 0 672.3485264124754 672.3485264124754 29.85985638199878 0 0 0 0 1.2614393726401687 0 0 0 W{I|L}N 3.5653 - 65 + NaN NaN 108184.9 NaN 7107 2666 9766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9777 48.661 NaN 186520 35 0 24361 0.327 + 18751 NAAFATVAAI 10 53 474.7612009771519 947.5078490211038 2 474.76104736328125 MULTI HCD FTMS 0 0 0 9776 96347.03125 0.11308044179900564 7 -0.21072769165039062 1 Unmodified _NAAFATVAAI_ REV__ENSG00000138356|ENST00000374700|AOX1 51.629811660486645 0.07186226796122157 2 {[QG]|[NA]}A{M(Oxidation (M))|F}[WR]A 7 -1 62.267 0 0 6.5717 0 0 0 128.07153066872664 128.07153066872664 49.34230830363995 0 0 0 0 1.8807196863200843 1.6989700043360187 0 1.0484550065040281 {[QG]|[NA]}A{M(Oxidation (M))|F}[WR]A 6.5717 - 86 NaN NaN 121781.6 NaN 7108 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9778 48.665 NaN 133900 35 0 14688 0.261 + 35328 YWMHVQNTF 9 47 621.2742773631014 1240.5340017930027 2 621.2741088867188 MULTI HCD FTMS 0 0 0 9776 57610.4375 0.1810516693372973 7 -0.21072769165039062 2 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 58.678817012210395 0.019429721296335044 2 QNT{M(Oxidation (M))|F} 4 5 45.433 0 0 3.6624 0 0 732.3053986301388 0 732.3053986301388 0 41.938200260161125 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + QNT{M(Oxidation (M))|F} 3.6624 + + 68 NaN NaN 107292.5 NaN 7109 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9779 48.669 NaN 236340 35 0 22650 0.262 + 23564 RPDPNFDAL 9 62 522.7591415723764 1043.5037302115527 2 522.7589721679688 MULTI HCD FTMS 0 0 0 9776 67691.640625 0.5516134470344697 8 -0.2303466796875 3 Unmodified _RPDPNFDAL_ ENSG00000121481|ENST00000367510|RNF2;ENSG00000204227|ENST00000374656|RING1;nc|ENSG00000204227|Q06587-2|RING1 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}DA{I|L} 4 5 32.735 0 0 3.137 0 0 579.2768421857437 0 579.2768421857437 0 15.745397123361968 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}DA{I|L} 3.137 + + 32 NaN NaN 120541 NaN 7110 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9780 48.672 NaN 345910 35 0 81312 0.261 + 13029 KYITKSFNFY 10 56 437.56411214270145 1309.6705070283044 3 437.56390380859375 MULTI HCD FTMS 0 0 0 9776 92848.0546875 0.8132975373090817 -2 0.05597686767578125 4 Unmodified _KYITKSFNFY_ ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF;nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant 10.315234532428624 0.4146267933501748 2 {M(Oxidation (M))|F}Y 2 8 30.969 0 0 2.3646 0 0 981.5289920523413 0 981.5289920523413 0 13.979400086720375 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}Y 2.3646 + + 9 + NaN NaN 134878.3 NaN 7111 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9781 48.675 NaN 143390 35 0 10030 0.261 + 6203 FPENFHQNL 9 60 573.2724591958928 1144.5303654585855 2 573.2720947265625 MULTI HCD FTMS 0 0 0 9776 45501.84375 0.47548933045667413 -9 0.28347015380859375 5 Unmodified _FPENFHQNL_ ENSG00000110442|ENST00000263401|COMMD9;ENST00000526789.1_1_11:36300025-36310962:-|nuORF;ENST00000528608.5_1_11:36298627-36310962:-|nuORF;nc|ENSG00000110442|Q9P000-2|COMMD9 47.748688679222035 0.03472022231463587 2 PE 2 7 19.464 0 0 1.7006 0 0 900.4030628888687 0 900.4030628888687 0 9.203103093438969 0 0 0 0 0 0 0 + PE 1.7006 + + 46 NaN NaN 110841.5 NaN 7112 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9782 48.679 NaN 132630 35 0 18688 0.264 + 2113 DFHLDRLQAF 10 55 421.21466031575915 1260.6221515474774 3 421.8732604980469 MULTI HCD FTMS 0 0 0 9776 11382.6513671875 0.8668772706485526 -6 0.18463897705078125 6 Unmodified _DFHLDRLQAF_ REV__ENSG00000160218|ENST00000291574|TRAPPC10;REV__PWP2-TRAPPC10|1|fusion 1.7422754331352037 0.46608156381052757 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3477 0 0 1095.5433074086086 0 1095.5433074086086 0 0.7918124604762511 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3477 + + 14 + NaN NaN 107139.2 NaN 7113 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9783 48.682 NaN 99579 35 0 11732 0.261 + 28954 TYAKANSF 8 39 451.2240552195562 900.4335575059124 2 451.2230224609375 MULTI HCD FTMS 0 0 0 9776 26098.595703125 0.6418803236512904 9 -0.2600059509277344 7 Unmodified _TYAKANSF_ REV__ENSG00000185658|ENST00000342449|BRWD1;REV__ENST00000473813.1_1_21:40581899-40585438:-|nuORF;REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__nc|ENSG00000185658|Q9NSI6|BRWD1 5.760428011301431 0.5334459684533844 2 A{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.9945 0 0 664.3176039920437 0 664.3176039920437 0 17.95880017344075 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.9945 - 28 + NaN NaN 103292.7 NaN 7114 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9784 48.685 NaN 147520 35 0 11798 0.261 + 22597 QTIQGILER 9 49 529.3039543858547 1056.5933558385093 2 529.3049926757812 MULTI HCD FTMS 0 0 0 9776 5594.8427734375 0.06325811548658117 4 -0.12181854248046875 8 Unmodified _QTIQGILER_ ENSG00000047410|ENST00000367478|TPR 2.9952420565917617 0.3283108881486655 2 {I|L} 1 8 6.9897 0 0 0.66153 0 0 172.25358018898322 768.2371920221311 940.4907722111143 0 0 0 0 0 0 0 0 0 + {I|L} 0.66153 + + 5 + NaN NaN 118409.2 NaN 7115 2667 9776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9786 48.69 NaN 1622100 35 0 123640 0.327 + 1366 AYPHNLMTF 9 81 555.2577693209265 1108.500985708653 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9785 935527.875 0.8595564113601397 -3 0.085662841796875 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 149.9946105101851 8.83195450578534E-06 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 101.11 0 0 9.1214 9.1214 95.702 0 0 0 24.76203644159419 46.70818753952375 24.76203644159419 15.203037561203843 0 2.579689690656103 2 0.4247425010840047 0.5994850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]Q{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};[RN][TP]N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][AG]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 9.1214;7.7499;6.6877;6.4623;5.9651;5.6002;5.5037;5.3437;5.3162;5.2639 +;-;-;-;-;-;-;-;-;- + 5800 NaN NaN 346228.8 NaN 7116 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9787 48.695 NaN 694690 35 0 155460 0.262 + 25483 SFDSTVRL 8 59 462.74290359127696 923.4712542493539 2 462.74285888671875 MULTI HCD FTMS 0 0 0 9785 254093.578125 0.49437391644728595 3 -0.092132568359375 2 Unmodified _SFDSTVRL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 66.45667989310934 0.03378486823941425 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L} 8 0 + 81.904 0 0 8.8691 8.8691 93.952 0 0 0 5.982587709797329 5.982587709797329 5.982587709797329 9.262137858390815 0 2.305462187404089 2 0.8494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTVR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSTV[VG]{I|L} 8.8691;7.8662 +;- + 83 NaN NaN 198278.3 NaN 7117 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9788 48.698 NaN 1671100 35 0 456470 0.261 + 29794 VEHYKKAPIF 10 89 411.23273534170266 1230.676376625308 3 411.2325439453125 MULTI HCD FTMS 0 0 0 9785 335459.8125 0.6637580900570903 -1 0.02968597412109375 3 Unmodified _VEHYKKAPIF_ ENSG00000071051|ENST00000233154|NCK2;ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1 14.218169984304629 0.37812005199054677 2 KEP{I|L}{M(Oxidation (M))|F} 5 6 51.766 0 0 4.2063 0 0 598.3297825203877 0 598.3297825203877 0 33.147809664224255 0 0 0 0.8807196863200843 0 0.8494850021680094 0 KEP{I|L}{M(Oxidation (M))|F} 4.2063 - 532 NaN NaN 345370.4 NaN 7118 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9789 48.702 NaN 290780 35 0 46426 0.261 + 29200 TYKVISNEF 9 53 550.7849748338543 1099.5553967345086 2 550.7849731445312 MULTI HCD FTMS 0 0 0 9785 151002.546875 0.562341524078099 5 -0.14806365966796875 4 Unmodified _TYKVISNEF_ ENSG00000114062|ENST00000648336|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 121.50329630698991 0.001120265034723027 2 [YT]KV{I|L}SNE{M(Oxidation (M))|F} 9 0 + 116.23 0 0 10.57 10.57 96.843 0 0 0 9.617581349478641 9.617581349478641 9.617581349478641 16.197887582883936 0 3.1549471895720984 2 1.1307196863200843 1.079689690656103 + + [YT]KV{I|L}SNE{M(Oxidation (M))|F};[YT]KV{I|L}SGGE{M(Oxidation (M))|F};[YT]KV{I|L}S[DG]A{M(Oxidation (M))|F};[YT][SG]S{I|L}V[VG]A{M(Oxidation (M))|F};[YT]KV{[ES]|[DT]|[{I|L}C]}[VG]A{M(Oxidation (M))|F} 10.57;9.0972;7.0533;5.7326;4.5273 +;-;-;-;- + 231 + NaN NaN 132807.6 NaN 7119 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9790 48.705 NaN 1204200 35 0 59872 0.261 + 13033 KYITQGQLL 9 110 532.3094717968992 1062.6043906605983 2 532.8087158203125 MULTI HCD FTMS 0 0 0 9785 239189.109375 0.44147056234804005 -3 0.085662841796875 5 Unmodified _KYITQGQLL_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 47.7319792270244 0.034743597693959835 2 VKDCK{I|L} 6 8 52.119 0 0 4.9048 0 0 358.23293976255485 0 358.23293976255485 0 17.41273052107976 0 0 0 0 0 0.5387254899964358 0.8851518780601924 VKDCK{I|L} 4.9048 - 1435 NaN NaN 265884.7 NaN 7120 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9791 48.708 NaN 595910 35 0 38698 0.261 + 24190 RYFIAPAKF 9 88 556.8159402920735 1111.617327650947 2 556.8161010742188 MULTI HCD FTMS 0 0 0 9785 128986.734375 1 0 0 6 Unmodified _RYFIAPAKF_ ENSG00000135862|ENST00000258341|LAMC1 29.081581746732265 0.1154664336125038 2 APAK{M(Oxidation (M))|F} 5 4 34.953 0 0 3.1443 0 0 579.3168080273023 0 579.3168080273023 0 17.043198066363697 0 0 0 1.4731975075880328 0 0 0 + APAK{M(Oxidation (M))|F} 3.1443 + + 648 NaN NaN 173264.8 NaN 7121 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9792 48.712 NaN 212970 35 0 18344 0.261 + 30625 VPDGASDAEL 10 65 487.22729176798026 972.4400306027605 2 487.22705078125 MULTI HCD FTMS 0 0 0 9785 61007.07421875 0.38576410474177947 3 -0.092132568359375 7 Unmodified _VPDGASDAEL_ ENST00000331268.9_1_15:79165226-79165316:+|nuORF 19.256988751693697 0.33098864134661865 2 AE{I|L} 3 7 23.557 0 0 2.4224 0 0 641.2658800674075 0 641.2658800674075 0 3.6349936396813085 0 0 0 0.7302046884880937 0 0.8807196863200843 0 + AE{I|L} 2.4224 + + 60 + NaN NaN 115446 NaN 7122 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9793 48.715 NaN 255090 35 0 57493 0.261 + 14102 KYYRQTLLF 9 54 616.3457057248895 1230.676858516579 2 616.3453979492188 MULTI HCD FTMS 0 0 0 9785 135887.78125 0.8593193538439314 -2 0.0626220703125 8 Unmodified _KYYRQTLLF_ ENSG00000117597|ENST00000491415|UTP25 32.89776655970281 0.09794800747291528 2 [YK][YR]QT{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 42.731 0 0 3.4721 3.4721 85.097 0 0 0 4.4543217502946675 16.761453081260385 4.4543217502946675 9.208187539523749 0 0.9247425010840047 0 0 1.1421590589602533 + + [YK][YR]QT{I|L}{I|L}{M(Oxidation (M))|F};[YK][YR][AG]T{I|L}{I|L}{M(Oxidation (M))|F};[YK][YR][DV]K{I|L}{M(Oxidation (M))|F};[YK][YR][DV]{I|L}K{M(Oxidation (M))|F} 3.4721;2.7239;2.5808;1.376 +;-;-;- + 48 NaN NaN 129496.2 NaN 7123 2668 9785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9795 48.72 NaN 518220 35 0 41931 0.327 + 13043 KYKGIFNGF 9 95 537.2925201525588 1072.5704873719176 2 537.2927856445312 MULTI HCD FTMS 0 0 0 9794 205604.765625 0.1858594103552524 7 -0.20072174072265625 1 Unmodified _KYKGIFNGF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 141.82661023413823 1.746659319327287E-05 2 KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F} 9 0 + 75.222 0 0 7.0132 7.0132 92.724 0 0 0 16.369594413119913 16.369594413119913 16.369594413119913 16.369594413119913 0 2.4916440611282624 0 0 1.569095041121134 + + KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F};[YK]K{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NG{M(Oxidation (M))|F};KYK{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGG{M(Oxidation (M))|F};[YK]K{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGG{M(Oxidation (M))|F};KYK{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KS]{M(Oxidation (M))|F} 7.0132;5.487;5.3315;4.6285;4.4119 +;+;-;-;- + 316 + NaN NaN 167779.8 NaN 7124 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9796 48.724 NaN 621750 35 0 157080 0.263 + 35980 YYVTELTHRI 10 62 432.2309852644564 1293.6711263935692 3 432.2310485839844 MULTI HCD FTMS 0 0 0 9794 181793.359375 0.5575439624847841 4 -0.11846542358398438 2 Unmodified _YYVTELTHRI_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 12.227587767072771 0.39673928642462597 2 YY{[TV]|[{I|L}S]}E{I|L} 6 4 56.911 0 0 4.3992 0 0 0 522.2821749322874 522.2821749322874 43.81228130928562 0 0 0 0 0.4247425010840047 2 0.4247425010840047 0 + YY{[TV]|[{I|L}S]}E{I|L} 4.3992 + + 30 + NaN NaN 177818.3 NaN 7125 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9797 48.728 NaN 722850 35 0 61911 0.261 + 12949 KYIDQKFVL 9 93 577.3345566020519 1152.6545602709036 2 577.3347778320312 MULTI HCD FTMS 0 0 0 9794 346272.625 0.3751105369722094 -4 0.11526107788085938 3 Unmodified _KYIDQKFVL_ ENSG00000078304|ENST00000694906|PPP2R5C;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E 148.26817274609934 1.0657023776783114E-05 2 [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L} 9 0 + 98.34 0 0 8.5316 8.5316 89.828 0 0 0 3.815599996832816 16.47817481888636 3.815599996832816 3.815599996832816 0 2.370371515030528 0 0.899649864804614 1.8807196863200843 + + [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L};[Y{I|L}]KDQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]K{M(Oxidation (M))|F}V{I|L};[Y{I|L}]KD[AG]K{M(Oxidation (M))|F}V{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}KV{I|L};[Y{I|L}]KDQ{M(Oxidation (M))|F}KV{I|L};[Y{I|L}]DKQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}KV{I|L};[Y{I|L}]KD[AG]{M(Oxidation (M))|F}KV{I|L};KY{I|L}DQK{M(Oxidation (M))|F}V{I|L} 8.5316;8.2006;7.7328;7.4017;7.3664;7.0354;6.7172;6.5676;6.2365;6.1743 +;-;-;-;-;-;-;-;-;+ + 2458 NaN NaN 202309.8 NaN 7126 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9798 48.731 NaN 216920 35 0 20350 0.262 -1 0 60 486.99332705912315 3401.902354147662 7 487.2819519042969 MULTI HCD FTMS 0 0 0 9794 103643.8671875 0.9087932622342106 -1 0.029598236083984375 4 NaN NaN 2 [TA]VV{[SA]|[TG]}{I|L}EA 9 -1 26.041 0 0 0.76548 0 0 0 2557.426579839927 2557.426579839927 6.77153377858993 0 0 0 0 0 1.6989700043360187 0 0 [TA]VV{[SA]|[TG]}{I|L}EA 0.76548 - 188 NaN NaN 125377.9 NaN 7127 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9799 48.735 NaN 144140 35 0 11365 0.261 + 6923 FPVHKVACF 9 45 524.2772401262067 1046.5399273192133 2 524.277099609375 MULTI HCD FTMS 0 0 0 9794 31444.4453125 0.10269163604202813 9 -0.2562141418457031 5 Unmodified _FPVHKVACF_ REV__GNE|p.R277C|1|0.14|ENSG00000159921|chr9:36234073-36234073|G/A|missense_variant 21.74664581756881 0.17247014374749275 2 EVPE 4 -1 39.993 0 0 3.8214 0 0 574.3077944916656 0 574.3077944916656 0 33.00312209084183 0 0 0 0.805462187404089 0 0 0 EVPE 3.8214 - 51 NaN NaN 105262.6 NaN 7128 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9800 48.738 NaN 128970 35 0 13234 0.261 + 9783 HYKPTPLYF 9 50 583.3055525579356 1164.596552182671 2 583.3048095703125 MULTI HCD FTMS 0 0 0 9794 42422.859375 0.029688261461633683 46 -1.2650070190429688 6 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 32.78568957990786 0.09846250359632436 2 Y{M(Oxidation (M))|F} 2 7 25.969 0 0 2.2299 0 0 836.4496327130875 0 836.4496327130875 0 3.7628749457997657 0 0 0 0.5 0 0 0 + Y{M(Oxidation (M))|F} 2.2299 + + 28 NaN NaN 106139.6 NaN 7129 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9801 48.741 NaN 177010 35 0 31299 0.261 -1 KYAMMFAEL 9 49 568.2618365195264 1134.5091201058526 2 568.26220703125 MULTI HCD FTMS 0 0 0 9794 87006.671875 0.6185825592201836 -2 0.059284210205078125 7 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 2 AD{M(Oxidation (M))|F}AE{I|L} 6 -1 45.623 0 0 4.0214 0 0 470.2096119611344 0 470.2096119611344 0 16.694699959806982 0 0 0 0.6861818737241735 0 0 0 AD{M(Oxidation (M))|F}AE{I|L} 4.0214 - 73 NaN NaN 127125.4 NaN 7130 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9802 48.744 NaN 251670 35 0 16069 0.262 -1 YPHWPARIDEM 11 68 477.55556797474867 1429.644874524446 3 477.55517578125 MULTI HCD FTMS 0 0 0 9794 42230.625 0.5970378065847654 -4 0.11526107788085938 8 Oxidation (M) _YPHWPARIDEM(Oxidation (M))_ ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000495212.1_1_1:156715087-156721275:-|nuORF 8.751783647060863 0.3805383164556717 2 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.7638 0 0 1135.5523708002688 0 1135.5523708002688 0 4.58166256570955 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.7638 + + 207 NaN NaN 126074.2 NaN 7131 2669 9794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9804 48.749 NaN 1756600 35 0 87447 0.327 + 13034 KYITQGQLL 9 107 532.3094717968992 1062.6043906605983 2 532.809326171875 MULTI HCD FTMS 0 0 0 9803 492067.09375 0.9082066368255954 -1 0.029613494873046875 1 Unmodified _KYITQGQLL_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 63.227496030279354 0.01306643085373406 2 [YK]{I|L}TQGQ{I|L}{I|L} 9 0 + 59.373 0 0 5.5875 5.5875 85.296 0 0 0 3.65279269351241 13.935122266739306 3.65279269351241 4.928454726523604 0 1.9436726795685342 0 0 0.9124379954164592 + + [YK]{I|L}TQGQ{I|L}{I|L};[K{I|L}]YTQGQ{I|L}{I|L};[YK]{I|L}T[AG]GQ{I|L}{I|L};[YK]{I|L}TQG[AG]{I|L}{I|L};[K{I|L}]YTQG[AG]{I|L}{I|L};[K{I|L}]YT[AG]GQ{I|L}{I|L};[YK]{I|L}T[AG]G[AG]{I|L}{I|L};[K{I|L}]YT[AG]G[AG]{I|L}{I|L};[YK][WR]GQ{I|L}{I|L};[YK][WR]G[AG]{I|L}{I|L} 5.5875;5.1237;4.721;4.721;4.2571;4.2571;3.8585;3.3947;2.9096;2.038 +;-;-;-;-;-;-;-;-;- + 1509 NaN NaN 349274.5 NaN 7132 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9805 48.754 NaN 196420 35 0 26665 0.261 + 34362 YPEGFEIHSM 10 53 613.2633989596794 1224.5122449861587 2 613.263427734375 MULTI HCD FTMS 0 0 0 9803 89725.578125 0.2599932448554277 7 -0.19364547729492188 2 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 82.5293158979368 0.0027392086780447054 2 YPEG{M(Oxidation (M))|F}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 0 + 106.03 0 0 8.6593 8.6593 96.191 0 0 0 98.07570277971656 9.131806016604358 9.131806016604358 24.235162698957282 0 2.089136830878453 1.6989700043360187 1.6549471895720984 0 + + YPEG{M(Oxidation (M))|F}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE[YT][YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};YP[DP]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YP{M(Oxidation (M))|F}{[DA]|[EG]}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YP[DP]{[YC]|[HE]}PE{[QN]|[E{I|L}]|[KN]} 8.6593;6.6802;6.397;4.9937;4.9794;4.9751;4.9532;4.6303;4.4178;3.8929 +;-;-;-;-;-;-;-;-;- + 727 + NaN NaN 115934.5 NaN 7133 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9806 48.757 NaN 323270 35 0 90206 0.261 -1 PYHFNIINC 9 58 589.2770716455417 NaN 0 589.2562255859375 PEAK HCD FTMS 0 0 0 9803 7285.87548828125 0.5577961436914475 1 -0.03292083740234375 3 Carbamidomethyl (C) _PYHFNIINC(Carbamidomethyl (C))_ ENSG00000273540|ENST00000614907|AGBL1;nc|ENSG00000273540|Q96MI9|AGBL1 4.75600775471527 0.27219989241163056 2 {I|L}{M(Oxidation (M))|F}EC(Carbamidomethyl (C)) 4 -1 26.855 0 0 2.2825 0 0 131.13807612589522 493.18601404361567 624.3240901695109 0 0 0 0 0 0 0 0.7302046884880937 0 {I|L}{M(Oxidation (M))|F}EC(Carbamidomethyl (C)) 2.2825 - 22 + NaN NaN 138210.1 NaN 7134 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9807 48.761 NaN 180720 35 0 14658 0.264 + 3299 EEFLYQIYR 9 59 420.87984658600266 NaN 0 420.87982177734375 PEAK HCD FTMS 0 0 0 9803 54349.79296875 0.9427783866743686 1 -0.03292083740234375 4 Unmodified _EEFLYQIYR_ ENST00000552283.5_1_12:102468021-102468123:-|nuORF 4.5288652416199255 0.27330059333143564 2 K{M(Oxidation (M))|F} 2 8 7.9588 0 0 0.94776 0 0 100.34417414780224 461.2169283502563 561.5611024980585 0 0 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 0.94776 - 24 + NaN NaN 115662.6 NaN 7135 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9808 48.764 NaN 207820 35 0 18516 0.261 -1 EPNPDDPLM 9 51 522.2211908795825 1042.427828825965 2 522.2216796875 MULTI HCD FTMS 0 0 0 9803 38593.90625 0.1826931419269226 -14 0.4284172058105469 5 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.1095 0 0 877.3816079781119 0 877.3816079781119 0 14.247425010840047 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.1095 + + 24 + NaN NaN 113865.2 NaN 7136 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9809 48.767 NaN 165290 35 0 11131 0.261 + 21722 QADPTKLEL 9 50 507.7768435852007 1013.5391342372014 2 507.777099609375 MULTI HCD FTMS 0 0 0 9803 39583.08984375 0.17622631312482756 -5 0.14487457275390625 6 Unmodified _QADPTKLEL_ ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF;ENST00000523219.1_1_5:159833399-159834623:-|nuORF 47.748688679222035 0.03472022231463587 2 P{I|L} 2 7 15.573 0 0 1.5365 0 0 785.4070912091812 0 785.4070912091812 0 4.318722087674656 0 0 0 0 0 0 0 P{I|L} 1.5365 - 43 NaN NaN 106067.6 NaN 7137 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9810 48.771 NaN 77432 35 0 7496.1 0.261 + 12532 KSDVSPQVK 9 52 494.2767803323106 NaN 0 494.2674560546875 PEAK HCD FTMS 0 0 0 9803 7179.634765625 0.383745863166244 4 -0.12182998657226562 7 Unmodified _KSDVSPQVK_ ENSG00000184368|ENST00000379643|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2 6.2057823575117 0.2651744870083793 2 D 1 8 5.4846 0 0 0.55594 0 0 215.11867189333367 653.3730562799436 868.4917281732774 0 0 0 0 0 0 0 0 0 + D 0.55594 + + 6 + NaN NaN 100785.6 NaN 7138 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9811 48.774 NaN 123090 35 0 11570 0.261 + 3647 ELIQDITQR 9 39 558.3055472677714 1114.5965416023428 2 558.306396484375 MULTI HCD FTMS 0 0 0 9803 28398.421875 0.673772577070311 -1 0.029613494873046875 8 Unmodified _ELIQDITQR_ ENSG00000147065|ENST00000360270|MSN 13.614867670302875 0.2427269026982664 2 {[QN]|[E{I|L}]|[KN]}{I|L}QD{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 39.103 0 0 3.5082 3.5082 85.78 0 0 0 33.618187372417346 5.6424927368726046 5.6424927368726046 9.208187539523756 0 0.5 0 0 0 + + {[QN]|[E{I|L}]|[KN]}{I|L}QD{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]};{[QN]|[E{I|L}]|[KN]}{I|L}[AG]D{I|L}T{[{M(Oxidation (M))|F}H]|[RQ]} 3.5082;2.6821 +;- + 55 + NaN NaN 105856.6 NaN 7139 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9812 48.777 NaN 110220 35 0 8567.7 0.261 + 32297 VYVAGAPRF 9 47 490.27161183729015 978.5286707413803 2 490.2706604003906 MULTI HCD FTMS 0 0 0 9803 37394.12109375 1 0 0 9 Unmodified _VYVAGAPRF_ ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11 36.04419817259434 0.08350412372117409 2 [YV]VAQR{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 8 3 + 58.365 0 0 5.9646 5.9646 85.777 0 0 0 0 0 0 4.515449934959719 0 1.1989700043360187 1.6989700043360187 0 0 [YV]VAQR{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]RQAV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]R[AG]AV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]VA[AG]R{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]VA[R{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]RAAGV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.9646;5.5031;5.018;4.5566;4.356;3.6115 -;-;-;-;-;- 138 + NaN NaN 91152.8 NaN 7140 2670 9803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9814 48.782 NaN 4989100 35 0 772630 0.327 + 4801 EYVEKFYRI 9 79 416.2203976508939 1245.6393635528818 3 416.2206115722656 MULTI HCD FTMS 0 0 0 9813 2126408.5 0.8378488757408573 1 -0.029621124267578125 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 26.020703789607367 0.13554323117744113 2 [YE]VEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 52.304 0 0 4.199 4.199 90.464 0 0 0 14.659452731211715 12.587418566968154 12.587418566968154 52.30381264341851 0 0.2742275032520141 0 0.75 0 + + [YE]VEK{M(Oxidation (M))|F}YR{I|L} 4.199 + + 315 + NaN NaN 675636.1 NaN 7141 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9815 48.787 NaN 1035100 35 0 349880 0.261 + 8536 HAIEESVVL 9 64 498.77171044854265 995.5288679638853 2 498.77178955078125 MULTI HCD FTMS 0 0 0 9813 500924.0625 0.8094950917930449 1 -0.029621124267578125 2 Unmodified _HAIEESVVL_ ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF 21.74664581756881 0.17247014374749275 2 SVV{I|L} 4 5 40.037 0 0 4.0217 0 0 579.2653675763687 0 579.2653675763687 0 36.938200260161125 0 0 0 0.7614393726401688 0 0.3494850021680094 0 + SVV{I|L} 4.0217 + + 23 NaN NaN 250449.3 NaN 7142 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9816 48.79 NaN 924410 35 0 56150 0.261 + 34271 YPDRIMNTF 9 99 586.7735938013249 1171.5326346694496 2 586.7740478515625 MULTI HCD FTMS 0 0 0 9813 518627.71875 0.15355621789872093 19 -0.513458251953125 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 179.28349886687624 1.1259799814826369E-12 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 109.64 0 0 9.3588 9.3588 95.272 0 0 0 68.83027600868097 12.587418566968154 12.587418566968154 12.460762528683702 0 2.9049471895720984 1.6989700043360187 2.3193415193665468 0.9119543704721594 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 9.3588;8.2952;7.4796;6.9762;6.6936;6.1902;6.1745;6.1394;6.1052;6.0498 +;-;+;-;-;-;-;-;-;- + 4863 + NaN NaN 224542.8 NaN 7143 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9817 48.794 NaN 321950 35 0 31951 0.261 + 12897 KYGALVNNF 9 62 513.27438319081 1024.53421344842 2 513.2744750976562 MULTI HCD FTMS 0 0 0 9813 123043 0.44499989715234045 3 -0.08890914916992188 4 Unmodified _KYGALVNNF_ ENSG00000117481|ENST00000474844|NSUN4;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;ENST00000495427.1_2_1:46810505-46812688:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant 65.23502041540118 0.010630085227462206 2 [YK]Q{I|L}VNN{M(Oxidation (M))|F} 8 2 [YK]Q + + 66.727 7.4473 1.7765 6.5129 6.5129 64.792 0 0 0 0 47.59795156016125 0 0 0 2.4247425010840047 0 0 0.9916440611282626 [YK]Q{I|L}VNN{M(Oxidation (M))|F} 6.5129 - 580 + NaN NaN 135797.5 NaN 7144 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9818 48.797 NaN 175820 35 0 18687 0.261 + 34750 YPYEHSYGL 9 58 564.7533431605059 1127.4921333878117 2 564.7535400390625 MULTI HCD FTMS 0 0 0 9813 103615.2265625 0.690259973178081 2 -0.05593109130859375 5 Unmodified _YPYEHSYGL_ ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2 74.42276476219924 0.007657080072768255 2 YPY 3 6 46.95 0 0 4.1641 0 0 0 701.2867525690061 701.2867525690061 1.4730903728015932 0 0 0 0 0.4247425010840047 2 0 0 + YPY 4.1641 + + 93 + NaN NaN 107955.4 NaN 7145 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9819 48.8 NaN 150540 35 0 15678 0.261 -1 KYLEMIYSM 9 50 605.2806348417259 1208.5467167502518 2 605.2803955078125 MULTI HCD FTMS 0 0 0 9813 53842.390625 0.7084410018833986 13 -0.3456306457519531 6 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 2 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 6 -1 55.627 0 0 4.6028 0 0 404.24241835761876 0 404.24241835761876 0 44.658336382690734 0 0 0 2.0501648626366045 0 0 0 E{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 4.6028 + + 72 NaN NaN 118364.2 NaN 7146 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9820 48.804 NaN 115300 35 0 11281 0.261 + 21404 PVNEKLHEI 9 55 539.7972806644632 1077.5800083957263 2 539.7987060546875 MULTI HCD FTMS 0 0 0 9813 29716.31640625 0.047603063315256704 15 -0.4115142822265625 7 Unmodified _PVNEKLHEI_ REV__ENSG00000154839|ENST00000285116|SKA1;REV__nc|ENSG00000154839|Q96BD8-2|SKA1 10.073929032068715 0.27331982688540024 2 E{I|L} 2 -1 24.464 0 0 2.2703 0 0 817.4450421502482 0 817.4450421502482 0 21.699740308471753 0 0 0 0.3494850021680094 0 0 0 E{I|L} 2.2703 + + 10 NaN NaN 112561.3 NaN 7147 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9821 48.807 NaN 332150 35 0 27821 0.261 -1 0 56 595.95089230677 1784.83084752051 3 595.9517211914062 MULTI HCD FTMS 0 0 0 9813 64202 0.3216176060116072 -5 0.154754638671875 8 NaN NaN 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 35.445 0 0 1.9859 0 0 1309.6233432294516 0 1309.6233432294516 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9859 - 14 NaN NaN 158206.6 NaN 7148 2671 9813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9823 48.812 NaN 615040 35 0 69951 0.327 + 4797 EYVEKFYRI 9 76 623.827069824236 1245.639586715272 2 623.8270874023438 MULTI HCD FTMS 0 0 0 9822 353869.53125 0.6626913738183704 3 -0.07890701293945312 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 98.72992552434107 0.004297209340172945 2 EYVEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 95.555 0 0 7.6712 7.6712 90.503 0 0 0 11.398057283815348 8.86243079410805 8.86243079410805 8.86243079410805 0 2.385151878060192 1.3979400086720375 0.4247425010840047 0.6643943297944485 + + EYVEK{M(Oxidation (M))|F}YR{I|L};EYVEK{M(Oxidation (M))|F}{I|L}[YR];[YE]VEK{M(Oxidation (M))|F}YR{I|L};EYVEK{I|L}{M(Oxidation (M))|F}[YR];EYV{I|L}[SG]{M(Oxidation (M))|F}YR{I|L};{I|L}DYEK{M(Oxidation (M))|F}YR{I|L};EYV{I|L}[SG]{M(Oxidation (M))|F}{I|L}[YR];[YE]VT[VG]{M(Oxidation (M))|F}YR{I|L};{I|L}DYEK{M(Oxidation (M))|F}{I|L}[YR];{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YR{I|L} 7.6712;6.9597;6.7561;6.2961;5.8167;5.5806;5.1053;4.9187;4.8692;4.5173 +;-;+;-;-;-;-;-;-;- + 837 + NaN NaN 180744.2 NaN 7149 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9824 48.816 NaN 418100 35 0 55644 0.262 + 21977 QERLTRTF 8 75 525.7861067507245 NaN 0 525.795166015625 PEAK HCD FTMS 0 0 0 9822 8878.142578125 0.6766762631663447 1 -0.026309967041015625 2 Unmodified _QERLTRTF_ ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC 16.942295170755138 0.3865212393897457 2 K{I|L}{I|L}TQT 6 5 37.657 0 0 3.5879 0 0 200.06275522313155 162.05600916080314 362.1187643839347 0 0 0 0 0 0.8494850021680094 0 0.6421590589602533 0 K{I|L}{I|L}TQT 3.5879 - 208 + NaN NaN 165069.1 NaN 7150 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9825 48.82 NaN 183900 35 0 15508 0.261 + 34751 YPYEHSYGL 9 62 564.7533431605059 1127.4921333878117 2 564.75341796875 MULTI HCD FTMS 0 0 0 9822 89908.1015625 0.5989463694854663 3 -0.07890701293945312 3 Unmodified _YPYEHSYGL_ ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2 81.61307344734483 0.005330412723537057 2 YPY{[YC]|[HE]}SYG{I|L} 9 0 + 65.657 0 0 5.8233 5.8233 93.237 0 0 0 47.698493605822634 6.439389643433628 6.439389643433628 65.65729377926338 0 2.1549471895720984 1.6989700043360187 0.3807196863200844 0 + + YPY{[YC]|[HE]}SYG{I|L} 5.8233 + + 142 + NaN NaN 109200.4 NaN 7151 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9826 48.823 NaN 385990 35 0 20094 0.261 -1 MPDLENRVL 9 71 551.7813626914638 1101.5481724497274 2 551.781494140625 MULTI HCD FTMS 0 0 0 9822 84857.375 0.6197177119861662 7 -0.17371749877929688 4 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 32.037481411007896 0.10189719824197178 2 {M(Oxidation (M))|F}PD{I|L}ENRV{I|L} 9 -1 + 46.769 0 0 4.2458 4.2458 85.886 0 0 0 21.574601832083093 9.921525057367404 9.921525057367404 9.208187539523749 0 1.6237125054200234 0 0 0 {M(Oxidation (M))|F}PD{I|L}ENRV{I|L};{M(Oxidation (M))|F}PD{I|L}EGGRV{I|L} 4.2458;3.4098 +;- + 93 + NaN NaN 140767.2 NaN 7152 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9827 48.827 NaN 131720 35 0 18605 0.263 -1 0 46 424.08158051091766 NaN 0 424.0810241699219 PEAK HCD FTMS 0 0 0 9822 76321.109375 0.5039872304619929 94 -2.531036376953125 5 NaN NaN 2 N 1 -1 5.4846 0 0 0.64818 0 0 204.84899978961033 524.2229097955686 729.0719095851789 0 0 0 0 0 0 0 0 0 N 0.64818 - 4 + NaN NaN 98184.4 NaN 7153 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9828 48.83 NaN 199500 35 0 36678 0.261 + 28216 TLDPVEKAL 9 40 493.2819071735091 984.5492614138183 2 493.2818298339844 MULTI HCD FTMS 0 0 0 9822 45745.66796875 0.25842724275271556 -2 0.06254196166992188 6 Unmodified _TLDPVEKAL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;nc|ENSG00000109971|P11142-2|HSPA8 33.4449034751529 0.0954363425218424 2 [{I|L}T]D 3 6 37.447 0 0 3.8035 0 0 0 652.3680447998969 652.3680447998969 9.387568628841265 0 0 0 0 1 2 0 0 + [{I|L}T]D 3.8035 + + 11 NaN NaN 116584.6 NaN 7154 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9829 48.833 NaN 198700 35 0 23791 0.261 + -1 CKEMELDDKF 10 68 433.8572795789745 1298.5500093371236 3 433.8572692871094 MULTI HCD FTMS 0 0 0 9822 34448.1171875 0.5180936130333234 2 -0.05928802490234375 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CKEMELDDKF_ REV__ENST00000403538.1_1_6:144521586-144521685:-|nuORF;REV__ENST00000458495.1_1_21:33213068-33213167:+|nuORF 1.7422754331352037 0.46608156381052757 2 G{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.383 0 0 1076.4498028935673 0 1076.4498028935673 0 15.740312677277187 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.383 - 7 + NaN NaN 111617.4 NaN 7155 2672 9822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9831 48.838 NaN 1935800 35 0 153270 0.327 + 1367 AYPHNLMTF 9 101 555.2577693209265 1108.500985708653 2 555.2579956054688 MULTI HCD FTMS 0 0 0 9830 1005818.1875 0.924138654583927 2 -0.0525970458984375 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 181.3275282027936 9.859558525874733E-13 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 108.21 0 0 9.7618 9.7618 92.127 0 0 0 6.626969767161356 16.478174818886373 6.626969767161356 6.626969767161356 0 2.888210492164445 2 0.75 0.8516784832448856 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}SPHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}SPHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]Q{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}[MT]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}SPH[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 9.7618;9.164;8.3333;8.1628;6.7695;6.5809;6.3109;6.0957;5.9719;5.8254 +;-;-;-;-;-;-;-;-;- + 6612 NaN NaN 378793.5 NaN 7156 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9832 48.843 NaN 1029400 35 0 334140 0.263 + 32813 WTLRLADPLF 10 68 411.23273534170266 1230.676376625308 3 411.2326354980469 MULTI HCD FTMS 0 0 0 9830 350193.5 0.6929109241972394 4 -0.10479354858398438 2 Unmodified _WTLRLADPLF_ REV__ENST00000369138.5_1_6:101846885-101846978:+|nuORF 10.898955630103616 0.4091668631510381 2 EP{I|L}{M(Oxidation (M))|F} 4 -1 49.24 0 0 4.0011 0 0 726.4242846871255 0 726.4242846871255 0 34.63615337528019 0 0 0 0.8807196863200843 0 0.8494850021680094 0 EP{I|L}{M(Oxidation (M))|F} 4.0011 - 270 NaN NaN 236818.8 NaN 7157 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9833 48.846 NaN 181930 35 0 11556 0.261 + -1 MLEPHMSRE 9 61 573.2558084120692 NaN 0 573.2723999023438 PEAK HCD FTMS 0 0 0 9830 4293.8369140625 0.9506441711955111 1 -0.032978057861328125 3 Oxidation (M) _MLEPHM(Oxidation (M))SRE_ REV__DOCK11|p.I398Yfs*7|1|0.31|ENSG00000147251|chrX:118573814-118573815|-/T|frameshift_variant;REV__ENSG00000147251|ENST00000276202|DOCK11 10.823927491677226 0.2427956001690155 2 DQH 3 -1 10.177 0 0 0.88924 0 0 130.0738579199887 631.2533663385374 761.327224258526 0 0 0 0 0 0 0 0 0 DQH 0.88924 - 45 + NaN NaN 116980 NaN 7158 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9834 48.85 NaN 196890 35 0 28834 0.263 + 18535 MTNFYLVLFY 10 58 437.5535910255273 NaN 0 437.5640869140625 PEAK HCD FTMS 0 0 0 9830 4109.19775390625 0.25124745442748997 -3 0.0888519287109375 4 Unmodified _MTNFYLVLFY_ ENSG00000121281|ENST00000673801|ADCY7 2.0860074813731053 0.33839895573887124 2 T 1 9 3.9794 0 0 0.45578 0 0 148.73967609226708 620.2837618463499 769.023437938617 0 0 0 0 0 0 0 0 0 + T 0.45578 + + 7 + NaN NaN 117040.8 NaN 7159 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9835 48.853 NaN 104580 35 0 11228 0.261 + 9784 HYKPTPLYF 9 47 583.3055525579356 1164.596552182671 2 583.3064575195312 MULTI HCD FTMS 0 0 0 9830 41138.203125 0.028789236473685854 50 -1.3665809631347656 5 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 32.78568957990786 0.09846250359632436 2 Y{M(Oxidation (M))|F} 2 7 21.454 0 0 1.8422 0 0 836.4542103498062 0 836.4542103498062 0 2.5134875797167666 0 0 0 0.5 0 0 0 + Y{M(Oxidation (M))|F} 1.8422 + + 29 NaN NaN 100961.7 NaN 7160 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9836 48.856 NaN 156220 35 0 26377 0.261 + -1 MFTRFNEEI 9 56 601.7791368793294 1201.5437208254586 2 601.7797241210938 MULTI HCD FTMS 0 0 0 9830 59238.69140625 0.264516454361922 -17 0.5172691345214844 6 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 24.020572477871973 0.15282392193088168 2 NVE{I|L} 4 -1 42.735 0 0 3.5567 0 0 728.2984486310562 0 728.2984486310562 0 37.250547101681875 0 0 0 0.4247425010840047 0 0 0.805462187404089 NVE{I|L} 3.5567 - 53 NaN NaN 127448 NaN 7161 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9837 48.86 NaN 252440 35 0 30506 0.261 + 16748 LYDAELSQM 9 51 543.2446604594415 1084.474767985683 2 543.2446899414062 MULTI HCD FTMS 0 0 0 9830 67837.609375 0.867193268277298 -1 0.026309967041015625 7 Oxidation (M) _LYDAELSQM(Oxidation (M))_ CON__P02538;CON__P04259;CON__P12035;CON__P19013;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000170477|ENST00000551956|KRT4;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 41.95555342248728 0.056367691549927025 2 M{I|L}A{M(Oxidation (M))|F}E{I|L}SQ 8 5 66.452 0 0 6.1275 0 0 0 162.02297388248283 162.02297388248283 50.96700671036736 0 0 0 0 2.1861818737241734 0 0 0 M{I|L}A{M(Oxidation (M))|F}E{I|L}SQ 6.1275 - 88 + NaN NaN 137020.1 NaN 7162 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9838 48.863 NaN 91095 35 0 10673 0.261 -1 LPYAGDVSM 9 46 484.72279728139125 NaN 0 484.72296142578125 PEAK HCD FTMS 0 0 0 9830 38713.0859375 0.765967902083974 -1 0.026309967041015625 8 Oxidation (M) _LPYAGDVSM(Oxidation (M))_ ENSG00000197632|ENST00000299502|SERPINB2 39.957323273324995 0.07841223356700552 2 SV 2 -1 24.464 0 0 2.5288 0 0 165.0450154153039 613.2603853815061 778.3054007968101 0 0 0 0 0 1 0 0.3494850021680094 0 SV 2.5288 - 17 + NaN NaN 99943.5 NaN 7163 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9839 48.866 NaN 149450 35 0 7264.1 0.261 -1 NPRQMTMET 9 52 562.2475521110462 NaN 0 562.24755859375 PEAK HCD FTMS 0 0 0 9830 28477.267578125 1 0 0 9 Oxidation (M) _NPRQM(Oxidation (M))TMET_ ENSG00000095794|ENST00000685392|CREM;ENST00000482646.5_1_10:35426742-35437470:+|nuORF;nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-21|CREM;nc|ENSG00000095794|Q03060-26|CREM;nc|ENSG00000095794|Q03060-32|CREM;nc|ENSG00000095794|Q03060-6|CREM 3.944395688203298 0.27613285122220627 2 {M(Oxidation (M))|F} 1 -1 11.237 0 0 1.0011 0 0 727.3284954801017 245.0563906305297 972.3848861106313 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.0011 + + 12 + NaN NaN 113722.1 NaN 7164 2673 9830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9841 48.871 NaN 1292200 35 0 134210 0.326 + 12950 KYIDQKFVL 9 97 577.3345566020519 1152.6545602709036 2 577.3345947265625 MULTI HCD FTMS 0 0 0 9840 788829.625 0.8545241028317979 1 -0.019618988037109375 1 Unmodified _KYIDQKFVL_ ENSG00000078304|ENST00000694906|PPP2R5C;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E 173.68634876852585 1.8204875074637502E-09 2 [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L} 9 0 + 101.06 0 0 8.7678 8.7678 93.09 0 0 0 11.439389643433628 68.06609696716707 11.439389643433628 9.208187539523749 0 2.2856668758921828 0 1.2764209843288903 1.559894379144197 + + [YK]{I|L}DQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]K{M(Oxidation (M))|F}V{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}KV{I|L};[YK]{I|L}DQKV{M(Oxidation (M))|F}{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}KV{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}VK{I|L};[YK]{I|L}D[AG]KV{M(Oxidation (M))|F}{I|L};KY{I|L}DQK{M(Oxidation (M))|F}V{I|L};[YK]{I|L}D[AG]{M(Oxidation (M))|F}VK{I|L};[YK]{I|L}DQ{M(Oxidation (M))|F}V{I|L}K 8.7678;7.969;7.5833;7.2856;6.7845;6.5619;6.4867;6.287;5.7631;5.5256 +;-;-;-;-;-;-;+;-;- + 1698 NaN NaN 275228.1 NaN 7165 2674 9840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9842 48.876 NaN 539030 35 0 28020 0.261 + 24547 RYLGKVLEL 9 86 545.8347034439041 1089.6548539546081 2 545.8345947265625 MULTI HCD FTMS 0 0 0 9840 265626.0625 0.7542890924731656 -3 0.08890914916992188 2 Unmodified _RYLGKVLEL_ ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF;nc|ENSG00000132361|O75153|CLUH 61.60191391372663 0.015340508911304802 2 [YR]{I|L}GKV{I|L}E{I|L} 9 0 + 63.131 0 0 5.7937 5.7937 87.168 0 0 0 1.4904371307691378 37.15447720443996 1.4904371307691378 8.590671722280234 0 1.2803695511246984 0 0.3494850021680094 0 + + [YR]{I|L}GKV{I|L}E{I|L};[YR]{I|L}GKVE{I|L}{I|L};[VP][HV]GKV{I|L}E{I|L};[YR]{I|L}GK{I|L}VE{I|L};[YR]{I|L}GKEV{I|L}{I|L};[VP][HV]GKVE{I|L}{I|L};{I|L}{M(Oxidation (M))|F}{I|L}Q{[TV]|[{I|L}S]}TR{I|L};[YR]{I|L}GK{I|L}D{I|L}{I|L};[VP][HV]GK{I|L}VE{I|L};[VP][HV]GKEV{I|L}{I|L} 5.7937;5.0053;4.9486;4.6155;4.4932;4.1603;3.8366;3.8271;3.7705;3.6481 +;-;-;-;-;-;-;-;-;- + 1103 NaN NaN 161956.3 NaN 7166 2674 9840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9843 48.879 NaN 308520 35 0 40904 0.261 + 167 AEKLITQTF 9 70 525.7954743558169 1049.5763957784336 2 525.7954711914062 MULTI HCD FTMS 0 0 0 9840 113788.25 0.9770119815460472 2 -0.04927825927734375 3 Unmodified _AEKLITQTF_ ENSG00000090273|ENST00000321265|NUDC 83.27773906761396 0.004791753909894001 2 {[CP]|[EA]}K{I|L}{I|L}TQT{M(Oxidation (M))|F} 9 0 + 82.902 0 0 7.8986 7.8986 91.891 0 0 0 2.243012119929091 13.929789624012741 2.243012119929091 9.208187539523749 0 2.853917193908117 0 1.2971062485323517 0 + + {[CP]|[EA]}K{I|L}{I|L}TQT{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}{I|L}T[AG]T{M(Oxidation (M))|F};[QT]V{I|L}{I|L}TQT{M(Oxidation (M))|F};[QT]V{I|L}{I|L}T[AG]T{M(Oxidation (M))|F};[QT]V{I|L}{I|L}D[KS]{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}{I|L}D[KS]{M(Oxidation (M))|F};{[CP]|[EA]}K{I|L}[KT][DV]{M(Oxidation (M))|F};{[CP]|[EA]}{[HG]|PP}T{I|L}{I|L}V[NP];{[CP]|[EA]}{[HG]|PP}T{I|L}[NP][{I|L}V];[QT]V{I|L}[YV]K{[CP]|[EA]} 7.8986;7.0213;6.5715;5.6941;4.3161;4.273;3.6677;3.0739;1.3411;0.40638 +;-;-;-;-;-;-;-;-;- + 578 + NaN NaN 145698 NaN 7167 2674 9840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9844 48.883 NaN 347160 35 0 27704 0.261 + 2665 DVFVVGTER 9 67 511.2693169922463 1020.5240810512926 2 511.26922607421875 MULTI HCD FTMS 0 0 0 9840 97355.4296875 0.8900971218026775 -1 0.032978057861328125 4 Unmodified _DVFVVGTER_ ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000263001|ENST00000573035|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I 55.23464941255904 0.024247875903973527 2 [DV]{M(Oxidation (M))|F}VVGT{[RE]|[WV]} 9 0 + 82.277 0 0 8.0622 8.0622 96.269 0 0 0 59.541492120621044 2.243012119929091 2.243012119929091 37.91300479156389 0 2.504432191740108 2 0.6139829889124311 0 + + [DV]{M(Oxidation (M))|F}VVGT{[RE]|[WV]};[{M(Oxidation (M))|F}V]DVVGT{[RE]|[WV]};[{M(Oxidation (M))|F}V][VS]SPT{[RE]|[WV]} 8.0622;4.3471;0.18249 +;-;- + 827 + NaN NaN 137222.9 NaN 7168 2674 9840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9845 48.886 NaN 98195 35 0 21763 0.261 + 14103 KYYRQTLLF 9 42 616.3457057248895 1230.676858516579 2 616.3453979492188 MULTI HCD FTMS 0 0 0 9840 67780.7265625 0.42862786938586284 4 -0.10477066040039062 5 Unmodified _KYYRQTLLF_ ENSG00000117597|ENST00000491415|UTP25 5.40270961882225 0.3100604913328303 2 {I|L}{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1101 0 0 952.5131833366929 0 952.5131833366929 0 5 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.1101 + + 11 NaN NaN 102816.9 NaN 7169 2674 9840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9847 48.891 NaN 768800 35 0 63693 0.327 + 13035 KYITQGQLL 9 96 532.3094717968992 1062.6043906605983 2 532.3112182617188 MULTI HCD FTMS 0 0 0 9846 320613.78125 0.5374641324433398 3 -0.08515167236328125 1 Unmodified _KYITQGQLL_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 93.16586880292088 0.00444300900000894 2 [YK]{I|L}TQGQ{I|L}{I|L} 9 0 + 68.647 0 0 6.4603 6.4603 86.495 0 0 0 4.286662482156345 16.478174818886366 4.286662482156345 4.286662482156345 0 2.223197507588033 0 0.25 1.2031198197908841 + + [YK]{I|L}TQGQ{I|L}{I|L};[K{I|L}]YTQGQ{I|L}{I|L};[YK]{I|L}T[AG]GQ{I|L}{I|L};[K{I|L}]YT[AG]GQ{I|L}{I|L};[YK][WR]GQ{I|L}{I|L};[YK]{I|L}[PS]{[QS]|[NT]}K{I|L};[K{I|L}]{[MG]|[TS]}Q[{M(Oxidation (M))|F}V]K{I|L};[K{I|L}]{[MG]|[TS]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K{I|L}{I|L};{[QG]|[NA]}{I|L}[WR]YK{I|L};[K{I|L}]Y[PS]{[QS]|[NT]}K{I|L} 6.4603;6.0569;5.5937;5.1903;3.0383;2.4469;2.4432;2.1125;2.1015;2.0435 +;-;-;-;-;-;-;-;-;- + 904 NaN NaN 218773.3 NaN 7170 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9848 48.895 NaN 374860 35 0 23067 0.261 + 22809 QYLGQIQHI 9 75 550.2983342441528 1098.5821155551055 2 550.2984008789062 MULTI HCD FTMS 0 0 0 9846 159558.765625 0.9378251113601547 1 -0.029659271240234375 2 Unmodified _QYLGQIQHI_ ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS;nc|ENSG00000176890|P04818-3|TYMS 96.28474662873226 0.004361282420133734 2 [YQ]{I|L}GQ{I|L}QH{I|L} 9 0 + 67.848 0 0 6.176 6.176 88.207 0 0 0 39.51131417802205 3.6258175340788625 3.6258175340788625 9.208187539523742 0 1.6131178558850543 0.9208187539523752 0 0.7614393726401688 + + [YQ]{I|L}GQ{I|L}QH{I|L};[YQ]{I|L}G[AG]{I|L}QH{I|L};[YQ]{I|L}GQ{I|L}[AG]H{I|L};[YQ]{I|L}G[AG]{I|L}[AG]H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}HWVRA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}HW{I|L}{[NV]|[RG]}{M(Oxidation (M))|F} 6.176;5.3378;4.9912;3.8105;1.1141;0.43616 +;-;-;-;-;- + 691 + NaN NaN 152047.2 NaN 7171 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9849 48.899 NaN 195310 35 0 56462 0.261 + -1 PCSPSCGPLML 11 50 589.2555829057159 1176.4966128782316 2 589.2562255859375 MULTI HCD FTMS 0 0 0 9846 77708.28125 0.20559469849737735 17 -0.4441947937011719 3 Carbamidomethyl (C),Oxidation (M) _PC(Carbamidomethyl (C))SPSCGPLM(Oxidation (M))L_ REV__ENSG00000014257|ENST00000336375|ACP3;REV__nc|ENSG00000014257|P15309-2|ACP3;REV__nc|ENSG00000014257|P15309-3|ACP3 5.731851221503515 0.39378271418728467 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 39.24 0 0 3.3353 0 0 656.2392445294937 0 656.2392445294937 0 35.26084705832169 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.3353 - 17 NaN NaN 114872.8 NaN 7172 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9850 48.902 NaN 177500 35 0 14285 0.262 -1 YPHWPARIDEM 11 56 477.55556797474867 1429.644874524446 3 477.889892578125 MULTI HCD FTMS 0 0 0 9846 38676.9921875 0.5531313482977093 1 -0.029659271240234375 4 Oxidation (M) _YPHWPARIDEM(Oxidation (M))_ ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000495212.1_1_1:156715087-156721275:-|nuORF 11.065280125700339 0.3606702632373656 2 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.7638 0 0 1135.555121555841 0 1135.555121555841 0 0 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.7638 + + 25 NaN NaN 113118.3 NaN 7173 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9851 48.906 NaN 133610 35 0 12505 0.261 -1 YPEGFEIHSM 10 56 613.2633989596794 1224.5122449861587 2 613.2635498046875 MULTI HCD FTMS 0 0 0 9846 40542.12890625 0.11747686521449169 12 -0.3292961120605469 5 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 36.506200033944 0.17572556831573002 2 YPE{[CT]|[{M(Oxidation (M))|F}G]}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 -1 + 42.088 0 0 3.4371 3.4371 87.964 0 0 0 38.53154177741963 5.764837301042718 5.764837301042718 20.415251228010117 0 0.9916440611282626 0 0.4247425010840047 0 YPE{[CT]|[{M(Oxidation (M))|F}G]}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YPE[YT][YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[EP]Y[W{M(Oxidation (M))|F}]{I|L}EQN 3.4371;1.7699;0.82533 +;-;- + 165 + NaN NaN 104972 NaN 7174 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9852 48.909 NaN 172230 35 0 22979 0.263 -1 0 64 486.99332705912315 3401.902354147662 7 487.2808532714844 MULTI HCD FTMS 0 0 0 9846 63423.70703125 0.5561258874260541 5 -0.12526702880859375 6 NaN NaN 2 [VS]A{I|L}[MT]{I|L}A 8 -1 33.109 0 0 0.97325 0 0 0 2612.438807178596 2612.438807178596 26.11941264025134 0 0 0 0 0 1.3979400086720375 0 0 [VS]A{I|L}[MT]{I|L}A 0.97325 - 196 NaN NaN 117433.3 NaN 7175 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9853 48.912 NaN 47719 35 0 3955.9 0.261 -1 0 31 639.5057410471644 NaN 0 639.4111328125 PEAK HCD FTMS 0 0 0 9846 10662.8505859375 1 0 0 7 NaN NaN 2 R 1 -1 3.0989 0 0 0.24267 0 0 606.0610903933538 511.8215426080687 1117.8826330014224 0 0 0 0 0 0 0 0 0 R 0.24267 - 2 + NaN NaN 94643.6 NaN 7176 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9854 48.916 NaN 79690 35 0 7552.4 0.264 + 8764 HHTDLNPI 8 49 473.74022307900634 945.4658932248127 2 473.73980712890625 MULTI HCD FTMS 0 0 0 9846 11638.802734375 0.19203247867864062 8 -0.2008514404296875 8 Unmodified _HHTDLNPI_ ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9 4.75600775471527 0.5349361699807423 2 T{I|L} 2 6 25.969 0 0 2.7467 0 0 713.3205433576187 0 713.3205433576187 0 20.48455006504028 0 0 0 0.5 0 0 0 T{I|L} 2.7467 - 14 NaN NaN 90823.9 NaN 7177 2675 9846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9856 48.923 NaN 1268900 35 0 175510 0.327 + 4802 EYVEKFYRI 9 75 416.2203976508939 1245.6393635528818 3 416.2203674316406 MULTI HCD FTMS 0 0 0 9855 392639 0.15470787702457664 6 -0.148193359375 1 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 20.580933911654288 0.18254163597178805 2 [YE]VEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 46.945 0 0 3.7687 3.7687 89.81 0 0 0 18.579693022437603 10.959924024478127 10.959924024478127 46.94456831828604 0 0.23965182871044374 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}YR{I|L} 3.7687 + + 190 + NaN NaN 277761.3 NaN 7178 2676 9855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9857 48.928 NaN 340420 35 0 26488 0.261 + 21723 QADPTKLEL 9 78 507.7768435852007 1013.5391342372014 2 507.7770080566406 MULTI HCD FTMS 0 0 0 9855 193083.125 0.8596177655581082 1 -0.0225372314453125 2 Unmodified _QADPTKLEL_ ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF;ENST00000523219.1_1_5:159833399-159834623:-|nuORF 107.09958533191995 0.0034159042678574016 2 [QA]DPTK{I|L}E{I|L} 9 0 + 45.529 0 0 4.4921 4.4921 85.155 0 0 0 9.553046282426358 11.311508337315175 9.553046282426358 8.62273132779854 0 1.6976212463643423 0.9208187539523752 0.8252574989159953 0 + + [QA]DPTK{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}K[TP]{[QG]|[NA]}E{I|L};[QA]PDTK{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}K[TP]D[QA]{I|L} 4.4921;3.6414;3.3248;2.8549 +;-;-;- + 173 + NaN NaN 138147.1 NaN 7179 2676 9855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9858 48.931 NaN 390520 35 0 54738 0.261 -1 EPNPDDPLM 9 60 522.2211908795825 1042.427828825965 2 522.220703125 MULTI HCD FTMS 0 0 0 9855 126709.1796875 0.5998070783024814 -8 0.23031997680664062 3 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 25.399314129420986 0.14091189997036632 2 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 23.812 0 0 2.2843 0 0 552.2190103218619 0 552.2190103218619 0 16.822581265925436 0 0 0 1 0 0 0 D[{I|L}P]{M(Oxidation (M))|F} 2.2843 + + 18 + NaN NaN 144113.9 NaN 7180 2676 9855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9859 48.935 NaN 192870 35 0 27188 0.261 + 35872 YYQYRTIE 8 56 568.2742602737549 1134.5339676143096 2 568.261962890625 MULTI HCD FTMS 0 0 0 9855 11884.03125 0.36318689242270713 -4 0.1085662841796875 4 Unmodified _YYQYRTIE_ REV__ENSG00000070778|ENST00000556564|PTPN21;REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF;REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF 13.50788311687929 0.4944073034352369 2 YY{I|L} 3 -1 34.705 0 0 3.059 0 0 0 692.3004244440061 692.3004244440061 23.022562268522577 0 0 0 0 0.4247425010840047 2 0 0 YY{I|L} 3.059 - 108 + NaN NaN 115149.4 NaN 7181 2676 9855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9860 48.938 NaN 49596 35 0 4285.6 0.261 -1 0 31 633.5816040039062 NaN 0 633.5816040039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 {I|L} 1 -1 0.48455 0 0 0.038362 0 0 537.2496771466812 609.7399386041624 1146.9896157508435 0 0 0 0 0 0 0 0 0 {I|L} 0.038362 - 1 + NaN NaN 98051.6 NaN 7182 2676 9855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9862 48.943 NaN 645380 35 0 36587 0.327 + 34272 YPDRIMNTF 9 95 586.7735938013249 1171.5326346694496 2 586.7739868164062 MULTI HCD FTMS 0 0 0 9861 367887.71875 0.10892485044724264 25 -0.684417724609375 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 154.7525637096362 3.8021791163654463E-06 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 101.34 0 0 8.6499 8.6499 91.469 0 0 0 7.68065045457152 7.68065045457152 7.68065045457152 7.68065045457152 0 3.079689690656103 1.5228787452803376 2.0387254899964358 0.8882104921644451 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}[SG]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F} 8.6499;7.9943;7.6174;7.4123;7.2083;6.8946;6.6263;6.1845;6.1086;5.7829 +;+;-;-;-;-;-;-;-;- + 3134 + NaN NaN 182851 NaN 7183 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9863 48.948 NaN 653280 35 0 49794 0.261 -1 0 87 595.95089230677 1784.83084752051 3 595.9511108398438 MULTI HCD FTMS 0 0 0 9861 128349.5859375 0.6429626267374817 1 -0.032955169677734375 2 NaN NaN 2 {M(Oxidation (M))|F}D[R{I|L}]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 49.781 0 0 2.7891 0 0 778.4144154279312 0 778.4144154279312 0 26.59334151725851 0 0 0 0.9247425010840047 0 0 1.2302046884880937 {M(Oxidation (M))|F}D[R{I|L}]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7891 - 207 NaN NaN 194467.5 NaN 7184 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9864 48.951 NaN 455500 35 0 78675 0.262 + 27615 TAIGDPPNVI 10 70 498.77171044854265 995.5288679638853 2 498.7717590332031 MULTI HCD FTMS 0 0 0 9861 138910.375 0.22447966703861683 7 -0.184906005859375 3 Unmodified _TAIGDPPNVI_ ENSG00000104044|ENST00000354638|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;nc|ENSG00000104044|Q04671-3|OCA2 22.736283301280096 0.29844449404982915 2 [TA]{I|L}E 4 7 30.177 0 0 3.0313 0 0 0 578.2948035930447 578.2948035930447 4.208187539523749 0 0 0 0 0 1.6989700043360187 0 0 [TA]{I|L}E 3.0313 - 127 NaN NaN 146909.4 NaN 7185 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9865 48.954 NaN 156980 35 0 16535 0.261 + 4798 EYVEKFYRI 9 53 623.827069824236 1245.639586715272 2 623.8265380859375 MULTI HCD FTMS 0 0 0 9861 63439.65625 0.11880342680640908 8 -0.211151123046875 4 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 23.80106514851385 0.15472041655325736 2 EYVEK{M(Oxidation (M))|F}Q 7 3 64.733 0 0 5.1968 0 0 0 319.18354211978755 319.18354211978755 30.80489184174948 0 0 0 0 0 2 0.3252574989159953 0 EYVEK{M(Oxidation (M))|F}Q 5.1968 - 159 + NaN NaN 112386.9 NaN 7186 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9866 48.958 NaN 178810 35 0 15231 0.261 -1 0 53 563.3175451553486 1686.9308060662456 3 563.6519775390625 MULTI HCD FTMS 0 0 0 9861 16959.328125 0.427050963759192 1 -0.032955169677734375 5 NaN NaN 2 {I|L}Y 2 -1 30.969 0 0 1.8358 0 0 1392.7727688121424 0 1392.7727688121424 0 23.979400086720375 0 0 0 1 0 0 0 {I|L}Y 1.8358 - 7 + NaN NaN 107395 NaN 7187 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9867 48.961 NaN 123190 35 0 10539 0.261 -1 KYLEMIYSM 9 49 605.2806348417259 1208.5467167502518 2 605.2808227539062 MULTI HCD FTMS 0 0 0 9861 36520.046875 0.4805191280815957 19 -0.5035972595214844 6 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 27.223235318498237 0.1251536255799991 2 {M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 5 -1 47.752 0 0 3.9512 0 0 533.2840443341812 0 533.2840443341812 0 35.445064397082206 0 0 0 1.6694451763165201 0 0 0 {M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 3.9512 + + 48 NaN NaN 109852.6 NaN 7188 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9868 48.964 NaN 137860 35 0 42808 0.264 + 7930 GDEHCSCF 8 46 449.1487760512095 NaN 0 449.1484069824219 PEAK HCD FTMS 0 0 0 9861 41498.38671875 0.7787508714006846 -32 0.9201393127441406 7 Unmodified _GDEHCSCF_ REV__ENSG00000006756|ENST00000381154|ARSD;REV__ENST00000495294.1_1_X:2825314-2825683:-|nuORF 0.7936320650641473 0.38822285293237185 2 R 1 -1 5.4846 0 0 0.61192 0 0 575.1027756358191 162.05587183170158 737.1586474675206 0 0 0 0 0 0 0 0 0 R 0.61192 - 6 + NaN NaN 99070.5 NaN 7189 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9869 48.968 NaN 194550 35 0 11768 0.261 + 30241 VITTGAPVSL 10 70 479.28458101992226 956.5546091066445 2 480.2875061035156 MULTI HCD FTMS 0 0 0 9861 49285.62109375 0.4960014023298048 -8 0.22325897216796875 8 Unmodified _VITTGAPVSL_ REV__ENSG00000172534|ENST00000310441|HCFC1;REV__HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant;REV__nc|ENSG00000172534|P51610-2|HCFC1;REV__nc|ENSG00000172534|P51610-4|HCFC1 10.073929032068715 0.4168838835836452 2 [{I|L}V][NS]{I|L}{I|L} 6 -1 14.895 0 0 1.5571 0 0 0 314.1372866791633 314.1372866791633 1.0822685886482493 0 0 0 0 0 1.3979400086720375 0 0 [{I|L}V][NS]{I|L}{I|L} 1.5571 - 169 NaN NaN 107128.5 NaN 7190 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9870 48.971 NaN 377890 35 0 133650 0.261 + 9908 ICPCPHLAL 9 61 483.7482691153328 965.4819852974656 2 483.7475891113281 MULTI HCD FTMS 0 0 0 9861 64607.859375 0.15968810077540335 -6 0.16072463989257812 9 Unmodified _ICPCPHLAL_ REV__tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1 14.581692164780916 0.23437375358055648 2 {I|L}A{I|L} 3 -1 36.198 0 0 3.7492 0 0 650.2658510707386 0 650.2658510707386 0 21.46082806091883 0 0 0 1 0 0 0 {I|L}A{I|L} 3.7492 + + 42 NaN NaN 135879.1 NaN 7191 2677 9861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9872 48.976 NaN 286650 35 0 44217 0.327 + 28217 TLDPVEKAL 9 54 493.2819071735091 984.5492614138183 2 493.2818603515625 MULTI HCD FTMS 0 0 0 9871 120279.703125 0.6794862424774927 4 -0.09270095825195312 1 Unmodified _TLDPVEKAL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;nc|ENSG00000109971|P11142-2|HSPA8 36.506200033944 0.08138327636155518 2 [{I|L}T]D 3 6 37.447 0 0 3.8035 0 0 0 652.3681556092725 652.3681556092725 7.397868585481078 0 0 0 0 1 2 0 0 + [{I|L}T]D 3.8035 + + 26 NaN NaN 130491.6 NaN 7192 2678 9871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9873 48.98 NaN 126180 35 0 29584 0.261 -1 MPPMGSPVI 9 46 472.7320388186752 943.4495247041505 2 472.73162841796875 MULTI HCD FTMS 0 0 0 9871 39788.74609375 0.3112051170276198 -6 0.16405868530273438 2 Oxidation (M) _M(Oxidation (M))PPMGSPVI_ ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A 28.486842064014134 0.11819662193267319 2 SPV{I|L} 4 -1 43.175 0 0 4.5763 0 0 529.2016336110851 0 529.2016336110851 0 40.07638152291939 0 0 0 1 0 0.4247425010840047 0 SPV{I|L} 4.5763 + + 13 NaN NaN 108924.3 NaN 7193 2678 9871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9875 48.985 NaN 1401900 35 0 113140 0.327 + 1368 AYPHNLMTF 9 88 555.2577693209265 1108.500985708653 2 555.2579345703125 MULTI HCD FTMS 0 0 0 9874 811732.4375 0.7458140367673373 8 -0.23448562622070312 1 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 149.9946105101851 8.83195450578534E-06 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 105.93 0 0 9.5562 9.5562 95.955 0 0 0 27.50431147411433 45.865947546949414 27.50431147411433 14.709836165889797 0 2.5356668758921828 2 0.6989700043360187 0.5501648626366046 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PHGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]Q{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}N{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][AG]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PH[TA]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TAY{M(Oxidation (M))|F};[WP]{[QG]|[NA]}N{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9.5562;8.2292;6.8906;6.1025;5.6578;5.6097;5.5636;5.4048;5.2155;5.1146 +;-;-;-;-;-;-;-;-;- + 2919 NaN NaN 300183.9 NaN 7194 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9876 48.99 NaN 1045400 35 0 85307 0.261 + 24154 RYEQLNLE 8 96 532.772515011743 NaN 0 532.7907104492188 PEAK HCD FTMS 0 0 0 9874 15425.8095703125 0.5843160263505477 2 -0.060089111328125 2 Unmodified _RYEQLNLE_ REV__ENSG00000070018|ENST00000261349|LRP6 18.13498045792455 0.38579626240450227 2 ENTVM 5 -1 27.228 0 0 2.5602 0 0 131.06094836033418 355.20978723697505 486.2707355973092 0 0 0 0 0 0 0 0 0.5774509799928715 ENTVM 2.5602 - 321 + NaN NaN 239533.7 NaN 7195 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9877 48.998 NaN 236070 35 0 46668 0.261 + 9995 IEMPNNGWEI 10 52 601.7791368793294 1201.5437208254586 2 601.7794189453125 MULTI HCD FTMS 0 0 0 9874 121857.8203125 0.5441274579190637 -11 0.29547119140625 3 Unmodified _IEMPNNGWEI_ REV__ENSG00000171246|ENST00000306773|NPTX1 19.361941925380144 0.3300069447713393 2 {M(Oxidation (M))|F}VE{I|L} 4 -1 35.745 0 0 2.975 0 0 695.2659779279312 0 695.2659779279312 0 18.772999740549317 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}VE{I|L} 2.975 - 61 NaN NaN 130088.8 NaN 7196 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9878 49.001 NaN 181870 35 0 23777 0.261 -1 MPSERCLSI 9 62 526.2484672492527 1050.4823815653053 2 526.2481689453125 MULTI HCD FTMS 0 0 0 9874 46318.57421875 0.8107607399573654 4 -0.10604095458984375 4 Oxidation (M) _M(Oxidation (M))PSERCLSI_ ENSG00000186231|ENST00000369261|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;nc|ENSG00000186231|Q96NJ5-3|KLHL32 8.745405648335112 0.2847203663274469 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 3 -1 17.76 0 0 1.6906 0 0 0 716.3390764718084 716.3390764718084 9.17612793400544 0 0 0 0 0.8807196863200843 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 1.6906 + + 88 NaN NaN 128297.5 NaN 7197 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9879 49.005 NaN 148590 35 0 12131 0.261 -1 LYDAELSQM 9 48 543.2446604594415 1084.474767985683 2 543.2442016601562 MULTI HCD FTMS 0 0 0 9874 27649.666015625 0.35345591420121564 5 -0.14229202270507812 5 Oxidation (M) _LYDAELSQM(Oxidation (M))_ CON__P02538;CON__P04259;CON__P12035;CON__P19013;CON__P48668;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000170477|ENST00000551956|KRT4;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 8.745405648335112 0.2847203663274469 2 {I|L}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4 -1 21.427 0 0 1.9758 0 0 591.2543124767603 0 591.2543124767603 0 10.96910013008056 0 0 0 1 0 0 0 {I|L}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.9758 + + 31 NaN NaN 104144.3 NaN 7198 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9880 49.008 NaN 153910 35 0 15343 0.261 + 7225 FSSFCMKSSES 11 60 620.2563030719556 NaN 0 620.2713623046875 PEAK HCD FTMS 0 0 0 9874 10584.390625 0.6235220683707875 -3 0.06515121459960938 6 Unmodified _FSSFCMKSSES_ ENST00000369478.3_1_1:117297020-117297110:+|nuORF 4.5288652416199255 0.32927305702295745 2 {I|L}DEYY 5 11 27.959 0 0 2.2575 0 0 234.07056523570583 318.1241854303344 552.1947506660402 0 0 0 0 0 0 0 0 0 {I|L}DEYY 2.2575 - 112 + NaN NaN 119391.9 NaN 7199 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9881 49.011 NaN 82305 35 0 6027.9 0.261 + -1 RRHHRCRCCHC 11 45 565.579345703125 NaN 0 565.579345703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 4 Carbamidomethyl (C) _RRHHRC(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))HC(Carbamidomethyl (C))_ REV__ENST00000479196.1_1_2:73308605-73315425:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96618.1 NaN 7200 2679 9874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9883 49.016 NaN 323210 35 0 25484 0.327 + 26961 SYLKDTKLW 9 79 577.3165222606668 1152.6184915881336 2 577.33447265625 MULTI HCD FTMS 0 0 0 9882 61738.4140625 1 0 0 1 Unmodified _SYLKDTKLW_ ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 38.61474834105838 0.07170385841135779 2 [YK]{I|L}TKDS{I|L}W 9 4 + 48.563 0 0 4.2133 4.2133 81.74 0 0 0 6.144141363238639 11.035356858250395 6.144141363238639 1.2371250542002343 0 0.8812033112643842 0 1.1747425010840047 0.5941876774005248 [YK]{I|L}TKDS{I|L}W;[YK]{I|L}TKD{I|L}SW;[YK]{I|L}DS[KT]{I|L}W;[YK]{I|L}D[KT]S{I|L}W;[YK]{I|L}D[KT]{I|L}SW;MV{M(Oxidation (M))|F}KQR{I|L}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}KD[KT]{I|L}W;MV{M(Oxidation (M))|F}K[AG]R{I|L}[MT];MK[{M(Oxidation (M))|F}V]QR{I|L}[MT];[YK]{I|L}TK[WE][VS] 4.2133;4.1059;3.7691;3.508;3.4006;3.0527;2.5171;2.2538;1.666;1.5285 -;-;-;-;-;-;+;-;-;- + 630 NaN NaN 135233.8 NaN 7201 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9884 49.021 NaN 169740 35 0 7042.7 0.261 + 22810 QYLGQIQHI 9 69 550.2983342441528 1098.5821155551055 2 550.29833984375 MULTI HCD FTMS 0 0 0 9882 33407.078125 0.1963539680197091 6 -0.1777191162109375 2 Unmodified _QYLGQIQHI_ ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS;nc|ENSG00000176890|P04818-3|TYMS 32.30548876998284 0.10066689432505688 2 Q{I|L}{[QG]|[NA]}{I|L}C(Carbamidomethyl (C)){I|L} 7 3 32.822 0 0 2.9877 0 0 268.1528492658219 0 268.1528492658219 0 8.693051333440938 0 0 0 0.2614393726401688 0 0 0.3252574989159953 Q{I|L}{[QG]|[NA]}{I|L}C(Carbamidomethyl (C)){I|L} 2.9877 - 262 NaN NaN 108428.9 NaN 7202 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9885 49.024 NaN 175540 35 0 13500 0.261 -1 PFEGVLMLHS 10 59 573.2865262620137 1144.5584995908273 2 573.2723999023438 MULTI HCD FTMS 0 0 0 9882 13477.2333984375 0.3890292174587621 -2 0.0401153564453125 3 Oxidation (M) _PFEGVLM(Oxidation (M))LHS_ SYTL5|p.R722H|1|0.48|ENSG00000147041|chrX:38126702-38126702|G/A|missense_variant 10.823927491677226 0.4098686510432541 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 3 -1 21.082 0 0 1.842 0 0 0 768.3714322902991 768.3714322902991 6.836936997521406 0 0 0 0 0 1.3010299956639813 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 1.842 + + 42 NaN NaN 115136.3 NaN 7203 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9886 49.027 NaN 203860 35 0 31620 0.261 + 26481 SVALALSTDP 10 64 487.2657356777587 NaN 0 487.2782287597656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SVALALSTDP_ REV__ENST00000437879.6_1_1:201182683-201184240:+|nuORF 13.90604991867851 0.3282826376286837 2 A{I|L}[MT]{I|L}A 6 -1 13.901 0 0 1.4294 0 0 186.07479948571273 183.07715784244377 369.1519573281565 0 0 0 0 0 0 0 0 0 A{I|L}[MT]{I|L}A 1.4294 - 37 + NaN NaN 106631.1 NaN 7204 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9887 49.031 NaN 99949 35 0 8105.8 0.261 + 35788 YYNAAGFNKL 10 60 580.7891813611747 1159.5638097891492 2 580.7905883789062 MULTI HCD FTMS 0 0 0 9882 51420.1875 0.9399654820551673 1 -0.029632568359375 5 Unmodified _YYNAAGFNKL_ ENSG00000156467|ENST00000287022|UQCRB;ENST00000518876.1_1_8:97245315-97245435:-|nuORF;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;nc|ENSG00000156467|P14927-2|UQCRB 32.78568957990786 0.20801173326193015 2 YYNA 4 6 47.307 0 0 4.0797 0 0 0 645.3382052057249 645.3382052057249 27.84318117920506 0 0 0 0 1.2614393726401687 2 0 0 + YYNA 4.0797 + + 22 + NaN NaN 98313 NaN 7205 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9888 49.034 NaN 83157 35 0 19594 0.263 + 10274 IKKDEQEHEF 10 43 434.88214347336697 NaN 0 434.8821105957031 PEAK HCD FTMS 0 0 0 9882 49594.44921875 0.8143903230035852 28 -0.7655906677246094 6 Unmodified _IKKDEQEHEF_ ENSG00000013275|ENST00000157812|PSMC4;ENST00000593455.5_1_19:40486165-40487209:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4 0.776531954647913 0.3395196853010637 2 {M(Oxidation (M))|F} 1 9 1.9897 0 0 0.22929 0 0 401.54924680825894 316.14313684635005 717.692383654609 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.22929 + + 3 + NaN NaN 103136.2 NaN 7206 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9889 49.037 NaN 140340 35 0 32835 0.261 + 699 APYEADAQL 9 33 489.23219861633885 976.4498442994777 2 489.23236083984375 MULTI HCD FTMS 0 0 0 9882 59680.87109375 0.514782676258861 -2 0.0401153564453125 7 Unmodified _APYEADAQL_ ENSG00000174371|ENST00000366548|EXO1;nc|ENSG00000174371|Q9UQ84-4|EXO1 29.081581746732265 0.1154664336125038 2 ADAQ{I|L} 5 4 45.745 0 0 4.6849 0 0 460.195116111525 0 460.195116111525 0 45.74539712336197 0 0 0 0.2742275032520141 0 0.4247425010840047 0.3807196863200844 + ADAQ{I|L} 4.6849 + + 30 NaN NaN 103717.6 NaN 7207 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9890 49.041 NaN 123360 35 0 10695 0.261 -1 KYLEMIYSM 9 52 605.2806348417259 1208.5467167502518 2 605.7699584960938 MULTI HCD FTMS 0 0 0 9882 17796.83203125 0.39309108820835187 22 -0.6113471984863281 8 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 27.223235318498237 0.1251536255799991 2 {M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 5 -1 44.57 0 0 3.6879 0 0 533.2873402326187 0 533.2873402326187 0 25.105742396127923 0 0 0 1.2887254899964358 0 0 0 {M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 3.6879 + + 49 NaN NaN 99320.2 NaN 7208 2680 9882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9892 49.046 NaN 358450 35 0 19129 0.327 + 24548 RYLGKVLEL 9 80 545.8347034439041 1089.6548539546081 2 545.8347778320312 MULTI HCD FTMS 0 0 0 9891 187673.78125 0.5329307102162458 4 -0.10844802856445312 1 Unmodified _RYLGKVLEL_ ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF;nc|ENSG00000132361|O75153|CLUH 32.78568957990786 0.09846250359632436 2 [YR]{I|L}GKV{I|L}E{I|L} 9 0 + 53.822 0 0 4.9394 4.9394 85.371 0 0 0 0.8712801896759714 28.76078152608656 0.8712801896759714 7.698405410982616 0 0.6989700043360187 0 0 0 + + [YR]{I|L}GKV{I|L}E{I|L};[YR]{I|L}GKVE{I|L}{I|L};[VP][HV]GKV{I|L}E{I|L};[YR]{I|L}GKEV{I|L}{I|L};[VP][HV]GKVE{I|L}{I|L};[VP][PG]R{I|L}P{I|L}E{I|L};[VP][HV]GKEV{I|L}{I|L};[VP][PG]R{I|L}PE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[KG][YG]V{I|L}{I|L};[{I|L}V][YG][RK]{I|L}E{I|L} 4.9394;4.2329;3.9327;3.5474;3.2262;2.8248;2.5408;2.1183;2.014;1.9614 +;-;-;-;-;-;-;-;-;- + 533 NaN NaN 152034.8 NaN 7209 2681 9891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9893 49.05 NaN 493660 35 0 116330 0.261 + 15429 LPDKTIASL 9 70 479.28458101992226 956.5546091066445 2 479.28436279296875 MULTI HCD FTMS 0 0 0 9891 290746.8125 0.5373564429940231 -4 0.10270309448242188 2 Unmodified _LPDKTIASL_ ENSG00000117625|ENST00000419091|RCOR3;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3 69.33821966488729 0.009302356455414924 2 [{I|L}P]DKT{I|L}AS{I|L} 9 0 + 85.16 0 0 8.9028 8.9028 95.642 0 0 0 20.87128018967597 74.19138127225978 20.87128018967597 16.237125054200234 0 1.805462187404089 1.5228787452803376 0.805462187404089 0 + + [{I|L}P]DKT{I|L}AS{I|L};[{I|L}P]DKTA{I|L}S{I|L};[DP]{I|L}KT{I|L}AS{I|L};[DP]K{I|L}T{I|L}AS{I|L};[{I|L}P]DKTAS{I|L}{I|L};[DP]{I|L}KTA{I|L}S{I|L};[DP]K{I|L}TA{I|L}S{I|L};[DP]{I|L}KTAS{I|L}{I|L};[DP]K{I|L}TAS{I|L}{I|L} 8.9028;7.2054;6.368;6.2718;6.1039;4.6705;4.5743;3.569;3.4729 +;-;-;-;-;-;-;-;- + 394 NaN NaN 156906 NaN 7210 2681 9891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9894 49.054 NaN 345240 35 0 45331 0.261 + 4417 EYFSSEESFDD 11 62 452.1693813546369 1353.4863146641108 3 452.1696472167969 MULTI HCD FTMS 0 0 0 9891 109576.78125 0.7814186114066677 -1 0.029632568359375 3 Unmodified _EYFSSEESFDD_ REV__ENSG00000163625|ENST00000295888|WDFY3;REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 1.3296431237094175 0.4130893034510334 2 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.3269 0 0 1087.3606297654271 0 1087.3606297654271 0 13.354706403678875 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.3269 - 21 + NaN NaN 141516.8 NaN 7211 2681 9891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9895 49.057 NaN 267930 35 0 11951 0.261 -1 MPDLENRVL 9 54 551.7813626914638 1101.5481724497274 2 551.7816772460938 MULTI HCD FTMS 0 0 0 9891 65354.66796875 0.4772884537284984 16 -0.4304542541503906 4 Oxidation (M) _M(Oxidation (M))PDLENRVL_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 10.799506525563784 0.2670509983294061 2 E{I|L}D[EP] 5 -1 21.708 0 0 1.9707 0 0 500.30735976386876 0 500.30735976386876 0 14.718487496163561 0 0 0 0.25 0 0 0 E{I|L}D[EP] 1.9707 - 23 NaN NaN 133563.3 NaN 7212 2681 9891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9896 49.06 NaN 176230 35 0 11317 0.261 + 24316 RYGLLTNEI 9 62 539.7972806644632 1077.5800083957263 2 539.780517578125 MULTI HCD FTMS 0 0 0 9891 14051.5712890625 0.022509446615375298 25 -0.6867828369140625 5 Unmodified _RYGLLTNEI_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 8.745405648335112 0.2847203663274469 2 N{[QN]|[E{I|L}]|[KN]} 3 6 11.427 0 0 1.0604 0 0 703.3993881338107 0 703.3993881338107 0 2.8431811792050627 0 0 0 0.5 0 0.5 0 + N{[QN]|[E{I|L}]|[KN]} 1.0604 + + 84 + NaN NaN 111882 NaN 7213 2681 9891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9897 49.064 NaN 83401 35 0 12800 0.262 + 29713 VDFSLWEGEAR 11 47 436.88057833825843 NaN 0 436.88104248046875 PEAK HCD FTMS 0 0 0 9891 18388.990234375 0.7506024446973426 1 -0.022953033447265625 6 Unmodified _VDFSLWEGEAR_ REV__ENSG00000092969|ENST00000366930|TGFB2;REV__ENST00000488793.1_1_1:218578572-218607636:+|nuORF;REV__nc|ENSG00000092969|P61812-2|TGFB2;REV__TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant 2.2527281973983926 0.3357298023243824 2 {I|L} 1 -1 2.2185 0 0 0.25449 0 0 593.6177412939013 162.02254663638908 755.6402879302904 0 0 0 0 0 0 0 0 0 {I|L} 0.25449 + + 3 + NaN NaN 95371.5 NaN 7214 2681 9891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9899 49.069 NaN 424230 35 0 79015 0.327 + 3884 EPNPDDPLM 9 61 522.2211908795825 1042.427828825965 2 522.22119140625 MULTI HCD FTMS 0 0 0 9898 174439.375 0.8257489482427987 -2 0.052585601806640625 1 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 56.17704186161178 0.022929533404884107 2 DP{I|L}{M(Oxidation (M))|F} 4 5 51.508 0 0 4.9411 0 0 552.2179432599625 0 552.2179432599625 0 38.00759935988653 0 0 0 1.7302046884880937 0 1.3494850021680094 0 + DP{I|L}{M(Oxidation (M))|F} 4.9411 + + 59 NaN NaN 147696.3 NaN 7215 2682 9898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9900 49.073 NaN 577460 35 0 71217 0.262 + 4803 EYVEKFYRI 9 68 416.2203976508939 1245.6393635528818 3 416.220458984375 MULTI HCD FTMS 0 0 0 9898 165871.8125 0.06535692065763624 12 -0.32216644287109375 2 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 2 [YE]VEK{M(Oxidation (M))|F}YR{I|L} 9 0 + 40.733 0 0 3.27 3.27 80.551 0 0 0 21.804653802821612 8.253671847721229 8.253671847721229 0.5803717656404217 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}YR{I|L};D{I|L}YEK{M(Oxidation (M))|F}YR{I|L} 3.27;3.2234 +;- + 68 + NaN NaN 179418.2 NaN 7216 2682 9898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9901 49.077 NaN 275440 35 0 29644 0.261 + 35567 YYIAWFVSS 9 65 568.2742602737549 1134.5339676143096 2 568.2619018554688 MULTI HCD FTMS 0 0 0 9898 18602.845703125 0.5685200231307941 2 -0.0592498779296875 3 Unmodified _YYIAWFVSS_ REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant 18.13498045792455 0.20367413111508956 2 YY{I|L}W 4 -1 37.549 0 0 3.3097 0 0 0 506.2060640924438 506.2060640924438 15.207581516585051 0 0 0 0 0.6747425010840047 2 0 0 YY{I|L}W 3.3097 - 540 + NaN NaN 125024.2 NaN 7217 2682 9898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9902 49.08 NaN 166400 35 0 10746 0.261 -1 MVEELEKAL 9 50 539.2781883392719 1076.5418237453437 2 539.2789306640625 MULTI HCD FTMS 0 0 0 9898 55188.59765625 0.581482720165525 -5 0.1256561279296875 4 Oxidation (M) _M(Oxidation (M))VEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 28.494509381512117 0.11816142465008336 2 VED{I|L} 4 -1 26.643 0 0 2.4749 0 0 602.3173695294937 0 602.3173695294937 0 13.544256385165951 0 0 0 0.4247425010840047 0 0 0 VED{I|L} 2.4749 - 40 NaN NaN 112060.8 NaN 7218 2682 9898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9903 49.083 NaN 135210 35 0 11938 0.261 -1 KYLEMIYSM 9 50 605.2806348417259 1208.5467167502518 2 605.2811279296875 MULTI HCD FTMS 0 0 0 9898 16182.984375 0.21293054656390242 24 -0.6638298034667969 5 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 22.65808497894818 0.16459551161911185 2 {I|L}YS{M(Oxidation (M))|F} 4 -1 37.083 0 0 3.0684 0 0 680.3163929669937 0 680.3163929669937 0 30.093728280886936 0 0 0 1.3807196863200843 0 0 0 {I|L}YS{M(Oxidation (M))|F} 3.0684 + + 26 NaN NaN 103451.1 NaN 7219 2682 9898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9904 49.087 NaN 170510 35 0 11591 0.261 + 812 AVIDQGLITR 10 61 543.3188363124356 1084.623119691671 2 543.3189086914062 MULTI HCD FTMS 0 0 0 9898 32722.94921875 0.8265922316024191 -1 0.022953033447265625 6 Unmodified _AVIDQGLITR_ ENSG00000278615|ENST00000524958|C11orf98;ENST00000354588.7_1_11:62430524-62435168:-|nuORF;ENST00000532786.2_1_11:62430524-62432598:-|nuORF 19.986897341741983 0.32416132266773673 2 {[VA]|[{I|L}G]}{I|L}DQ{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 0 + 42.905 0 0 3.9557 3.9557 84.714 0 0 0 35.915149811213496 7.269987279362624 7.269987279362624 9.164539485499247 0 1.5 0 0 0 + + {[VA]|[{I|L}G]}{I|L}DQ{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[VA]|[{I|L}G]}{I|L}D[AG]{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.9557;3.1108 +;- + 71 + NaN NaN 119703.9 NaN 7220 2682 9898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9906 49.092 NaN 567960 35 0 38326 0.326 + 34273 YPDRIMNTF 9 82 586.7735938013249 1171.5326346694496 2 586.774169921875 MULTI HCD FTMS 0 0 0 9905 253133.609375 0.07494824953121001 31 -0.8601036071777344 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 117.83759599426817 0.001662893820975323 2 YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 81.961 0 0 6.996 6.996 85.828 0 0 0 0.4685977028693742 0.4685977028693742 0.4685977028693742 0.4685977028693742 0 2.798455006504028 1.6989700043360187 1.6641478515490356 0.3054621874040891 + + YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 6.996;6.956;6.4383;6.17;5.9493;5.8831;5.759;5.6523;5.1508;5.0971 +;+;-;-;-;-;-;-;-;- + 2229 + NaN NaN 169318.3 NaN 7221 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9907 49.096 NaN 312660 35 0 60119 0.261 + 567 APEEHPVLL 9 52 502.77415335255756 1003.5337537719151 2 502.7739562988281 MULTI HCD FTMS 0 0 0 9905 70261.0625 0.0007523298798637509 109 -2.9666213989257812 2 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 34.10243960390752 0.09241788333544565 2 {I|L}{I|L} 2 7 25.217 0 0 2.5128 0 0 759.3552894887891 0 759.3552894887891 0 5.752574989159953 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.5128 + + 5 NaN NaN 133037.1 NaN 7222 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9908 49.1 NaN 164440 35 0 17321 0.261 + 33737 YLEIIQFIDY 10 61 439.56209512164224 NaN 0 439.57135009765625 PEAK HCD FTMS 0 0 0 9905 4548.158203125 0.396398658412507 1 -0.036251068115234375 3 Unmodified _YLEIIQFIDY_ REV__ENSG00000186103|ENST00000334384|ARGFX 5.40270961882225 0.33556031839241995 2 {I|L} 1 -1 4.6041 0 0 0.52492 0 0 628.9574289134033 132.04538904361564 761.0028179570189 0 0 0 0 0 0 0 0 0 {I|L} 0.52492 + + 7 + NaN NaN 101866.7 NaN 7223 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9909 49.103 NaN 205140 35 0 12015 0.261 + 16442 LSPDLGQTAL 10 71 507.7768435852007 1013.5391342372014 2 507.77630615234375 MULTI HCD FTMS 0 0 0 9905 40850.00390625 0.18186669125502614 8 -0.23033905029296875 4 Unmodified _LSPDLGQTAL_ CON__Q28107;CON__Q28107;CON__Q28107;CON__Q28107;CON__Q28107;CON__Q28107;CON__Q28107 22.736283301280096 0.29844449404982915 2 Q{I|L} 2 8 19.949 0 0 1.9682 0 0 754.3807850568375 0 754.3807850568375 0 8.010299956639813 0 0 0 0 0 0 0.3494850021680094 Q{I|L} 1.9682 - 48 NaN NaN 122265.3 NaN 7224 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9910 49.106 NaN 145260 35 0 39684 0.261 -1 ESEHSMDTLL 10 45 589.2555829057159 1176.4966128782316 2 589.2562866210938 MULTI HCD FTMS 0 0 0 9905 34878.80078125 0.09227969548703902 25 -0.6900062561035156 5 Oxidation (M) _ESEHSM(Oxidation (M))DTLL_ ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF 6.723162845929126 0.4397169348982109 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 38.36 0 0 3.2605 0 0 656.239061424025 0 656.239061424025 0 32.875240784723374 0 0 0 0.5 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.2605 - 12 NaN NaN 96341.2 NaN 7225 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9911 49.11 NaN 209930 35 0 41872 0.262 + 16491 LTAVHDAIL 9 48 476.776887500396 951.539222067592 2 476.77679443359375 MULTI HCD FTMS 0 0 0 9905 68479.6015625 0.5072365232976446 -2 0.04595184326171875 6 Unmodified _LTAVHDAIL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF 32.30548876998284 0.10066689432505688 2 {[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}[H{I|L}]{I|L}{I|L} 8 5 + 38.178 0 0 4.0122 4.0122 83.224 0 0 0 5.509074688805811 13.99674684468792 5.509074688805811 5.509074688805811 0 0.4247425010840047 1.5228787452803376 0.3807196863200844 0 {[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}[H{I|L}]{I|L}{I|L};{[QS]|[NT]}E{I|L}[H{I|L}]{I|L}{I|L} 4.0122;3.4333 -;- 69 NaN NaN 116012.2 NaN 7226 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9912 49.113 NaN 113260 35 0 6684.4 0.261 + 4799 EYVEKFYRI 9 47 623.827069824236 1245.639586715272 2 624.3284912109375 MULTI HCD FTMS 0 0 0 9905 34201.390625 0.10071252317218665 13 -0.35494232177734375 7 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 8.97624648632007 0.2828035605319045 2 {I|L}M{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 6 6 43.136 0 0 3.463 0 0 0 447.23493372135005 447.23493372135005 35.17728766960431 0 0 0 0 0 0 0.5 0 {I|L}M{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 3.463 - 58 + NaN NaN 100025.4 NaN 7227 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9913 49.116 NaN 90890 35 0 6788.8 0.261 -1 YPEGFEIHSM 10 48 613.2633989596794 1224.5122449861587 2 613.263427734375 MULTI HCD FTMS 0 0 0 9905 26790.7578125 0.07763021650419458 20 -0.5720558166503906 8 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 16.149105407346934 0.3600587335443843 2 YPEHQEY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 + 42.853 0 0 3.4996 3.4996 85.125 0 0 0 22.05136871872881 7.147642715192504 7.147642715192504 9.208187539523749 0 0 0 0 0 YPEHQEY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YPEH[AG]EY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3.4996;2.7476 -;- 89 + NaN NaN 102272.9 NaN 7228 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9914 49.12 NaN 126170 35 0 7867.4 0.261 + -1 FEMYPCVL 8 52 529.7382066574004 1057.4618603816007 2 529.7380981445312 MULTI HCD FTMS 0 0 0 9905 30677.359375 0.2613482466441457 -13 0.3423004150390625 9 Carbamidomethyl (C) _FEMYPC(Carbamidomethyl (C))VL_ REV__ENSG00000115594|ENST00000410023|IL1R1 9.347437153973935 0.5250182646323369 2 TV{I|L} 3 -1 32.747 0 0 3.0968 0 0 726.2515125959 0 726.2515125959 0 23.767959391884546 0 0 0 0 0 0.805462187404089 0 TV{I|L} 3.0968 - 8 NaN NaN 100806 NaN 7229 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9915 49.123 NaN 199980 35 0 17349 0.261 -1 MPMQDIKMIL 10 37 634.3086526450203 1266.6027523568405 2 634.8106079101562 MULTI HCD FTMS 0 0 0 9905 13830.3095703125 0.45621727536603884 1 -0.036251068115234375 10 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 6.630372943996041 0.44020808660041416 2 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 32.735 0 0 2.5845 0 0 747.2888226838073 0 747.2888226838073 0 27.250547101681875 0 0 0 0.3807196863200844 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 2.5845 + + 8 NaN NaN 116102 NaN 7230 2683 9905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9917 49.128 NaN 679870 35 0 299980 0.327 + 8479 HADPTELAL 9 48 483.7482691153328 965.4819852974656 2 483.7481384277344 MULTI HCD FTMS 0 0 0 9916 301985.0625 0.7464017777352104 1 -0.0262451171875 1 Unmodified _HADPTELAL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 20.453626601364224 0.18364154288633264 2 E{I|L}A{I|L} 4 5 43.36 0 0 4.491 0 0 521.2203846662125 0 521.2203846662125 0 27.220938031831565 0 0 0 1.3807196863200843 0 0 0 + E{I|L}A{I|L} 4.491 + + 56 NaN NaN 190737.5 NaN 7231 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9918 49.132 NaN 167430 35 0 43065 0.261 -1 MPPMGSPVI 9 47 472.7320388186752 943.4495247041505 2 472.7320251464844 MULTI HCD FTMS 0 0 0 9916 127853.765625 1 0 0 2 Oxidation (M) _M(Oxidation (M))PPMGSPVI_ ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A 23.1484247019978 0.1603590852062899 2 S[VP]{I|L} 4 -1 30.445 0 0 3.227 0 0 529.2020573300174 0 529.2020573300174 0 19.987737688117235 0 0 0 1 0 0.4247425010840047 0 S[VP]{I|L} 3.227 + + 13 NaN NaN 117369.7 NaN 7232 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9919 49.136 NaN 275790 35 0 14487 0.261 + 21904 QDLIPRASL 9 73 506.7927164003182 1011.5708798674365 2 506.7930603027344 MULTI HCD FTMS 0 0 0 9916 63255.5234375 0.9267997443739548 3 -0.092193603515625 3 Unmodified _QDLIPRASL_ ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF 14.838274106304384 0.23215694253501695 2 C(Carbamidomethyl (C))A{I|L} 3 7 16.695 0 0 1.6504 0 0 649.4122501528071 0 649.4122501528071 0 0.49554301166903514 0 0 0 0.9247425010840047 0 0 0 C(Carbamidomethyl (C))A{I|L} 1.6504 - 77 + NaN NaN 119184.2 NaN 7233 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9920 49.139 NaN 106910 35 0 10823 0.261 + 16497 LTDIKEPGI 9 43 493.2819071735091 984.5492614138183 2 493.2819519042969 MULTI HCD FTMS 0 0 0 9916 42293.61328125 0.23892583389075225 10 -0.26291656494140625 4 Unmodified _LTDIKEPGI_ REV__ENSG00000116977|ENST00000366584|LGALS8;REV__ENST00000366583.6_1_1:236689310-236706138:+|nuORF;REV__nc|ENSG00000116977|O00214-2|LGALS8 12.240655878213236 0.2545997876781172 2 [{I|L}T]D 3 -1 37.447 0 0 3.8035 0 0 0 652.3678398652432 652.3678398652432 37.447274948966935 0 0 0 0 1 2 0 0 [{I|L}T]D 3.8035 + + 11 NaN NaN 108021.7 NaN 7234 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9921 49.143 NaN 66524 35 0 15683 0.261 + 30860 VQPKQDAFANF 11 38 632.8193296668086 1263.624106400417 2 632.8189086914062 MULTI HCD FTMS 0 0 0 9916 6563.48388671875 0.1563399779649503 -1 0.036251068115234375 5 Unmodified _VQPKQDAFANF_ ENSG00000113282|ENST00000411809|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 5.783430956126388 0.39355650299313505 2 AN{M(Oxidation (M))|F} 3 8 26.198 0 0 2.0732 0 0 913.4583607404312 0 913.4583607404312 0 26.197887582883936 0 0 0 0 0 0 0 + AN{M(Oxidation (M))|F} 2.0732 + + 6 NaN NaN 103010.7 NaN 7235 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9922 49.146 NaN 97791 35 0 5663.8 0.261 -1 YPEGFEIHSM 10 53 613.2633989596794 1224.5122449861587 2 613.2630615234375 MULTI HCD FTMS 0 0 0 9916 32094.740234375 0.0929992966409455 21 -0.5783576965332031 6 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 5.731851221503515 0.44496410492002586 2 YPEHQEY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 + 39.174 0 0 3.1991 3.1991 85.512 0 0 0 13.767507096021 7.147642715192511 7.147642715192511 9.208187539523756 0 0 0 0 0 YPEHQEY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};YPEH[AG]EY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3.1991;2.4471 -;- 97 + NaN NaN 102672.8 NaN 7236 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9923 49.149 NaN 30663 35 0 2780.7 0.261 -1 MKFIQKYHM 9 29 629.3089599609375 NaN 0 629.3089599609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _M(Oxidation (M))KFIQKYHM(Oxidation (M))_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91886.8 NaN 7237 2684 9916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9925 49.154 NaN 2804100 35 0 328210 0.327 + 24322 RYGLVTNEI 9 103 532.7903462780607 1063.5661396229214 2 532.7906494140625 MULTI HCD FTMS 0 0 0 9924 1520339 0.9191648558899321 1 -0.039638519287109375 1 Unmodified _RYGLVTNEI_ ENSG00000115267|ENST00000649979|IFIH1 136.39213081522345 0.00021731600835925866 2 [Y{I|L}]{[NV]|[RG]}VTNE{I|L} 9 2 + 80.158 0 0 7.5367 7.5367 91.257 0 0 0 10.880704491920199 13.03727511607336 10.880704491920199 9.208187539523749 0 1.6747425010840047 1.3979400086720375 0.9436726795685342 0.5891368308784531 [Y{I|L}]{[NV]|[RG]}VTNE{I|L};[Y{I|L}]{[NV]|[RG]}VTGGE{I|L};[YR]G{I|L}VTNE{I|L};[Y{I|L}]{[NV]|[RG]}VTNKN;[Y{I|L}]{[NV]|[RG]}VTEN{I|L};[YG]R{I|L}VTNE{I|L};[YR]G{I|L}VTGGE{I|L};[Y{I|L}]K{[RE]|[WV]}NE{I|L};[Y{I|L}]{[NV]|[RG]}VTGGKN;[Y{I|L}]K[PS]TNKN 7.5367;6.6709;6.5136;6.3109;6.0532;5.7101;5.6479;5.5466;5.4451;5.4 -;-;+;-;-;-;-;-;-;- + 2795 NaN NaN 510283.7 NaN 7238 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9926 49.159 NaN 803470 35 0 65129 0.261 + 1369 AYPHNLMTF 9 80 555.2577693209265 1108.500985708653 2 555.2578735351562 MULTI HCD FTMS 0 0 0 9924 401515.40625 0.36890952255384013 14 -0.3811798095703125 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 123.45060196383646 0.0010021686353097689 2 T{M(Oxidation (M))|F}{I|L}NTDS{M(Oxidation (M))|F} 8 7 69.25 0 0 6.2472 0 0 165.07893569160314 0 165.07893569160314 0 33.637648274571085 0 0 0 1.9489700043360187 0 2.31295299324845 0 T{M(Oxidation (M))|F}{I|L}NTDS{M(Oxidation (M))|F} 6.2472 - 1877 NaN NaN 208530.1 NaN 7239 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9927 49.162 NaN 331480 35 0 64281 0.261 + -1 NPIVSFMHLE 10 66 601.7951498224783 1201.5757467117564 2 601.7794799804688 MULTI HCD FTMS 0 0 0 9924 6941.072265625 0.18386092161074055 -3 0.0854949951171875 3 Oxidation (M) _NPIVSFM(Oxidation (M))HLE_ REV__ENSG00000182022|ENST00000435907|CHST15;REV__nc|ENSG00000182022|Q7LFX5-2|CHST15 10.073929032068715 0.4168838835836452 2 EVNAM{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]} 9 -1 39.319 0 0 3.2723 0 0 131.1271909772475 0 131.1271909772475 0 33.1213749954943 0 0 0 0 0 0.9247425010840047 1.1989700043360187 EVNAM{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]} 3.2723 - 235 + NaN NaN 147239.8 NaN 7240 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9928 49.166 NaN 400360 35 0 30469 0.261 + 13922 KYQKGFSLW 9 85 578.8111865420695 1155.607820150939 2 578.8115234375 MULTI HCD FTMS 0 0 0 9924 207811.46875 0.614039808259809 -2 0.062496185302734375 4 Unmodified _KYQKGFSLW_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 122.17920374332846 0.0010792739174387011 2 KY{[CT]|[{M(Oxidation (M))|F}G]}Q{I|L}KSW 9 5 + 70.319 0 0 6.085 6.085 86.348 0 0 0 10.52739851796558 10.52739851796558 10.52739851796558 5.593859345357188 0 1.2134679910804405 0 1.2856668758921828 0.8494850021680094 KY{[CT]|[{M(Oxidation (M))|F}G]}Q{I|L}KSW;KY{[CT]|[{M(Oxidation (M))|F}G]}QKS{I|L}W;KY{[CT]|[{M(Oxidation (M))|F}G]}[AG]{I|L}KSW;KY{[CT]|[{M(Oxidation (M))|F}G]}QK{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}SK{I|L}QYKW;K{[CT]|[{M(Oxidation (M))|F}G]}YQ{I|L}KSW;[{M(Oxidation (M))|F}V]ASKQYKW;KY{[CT]|[{M(Oxidation (M))|F}G]}[AG]KS{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}SKQYKW;[YK]Q{I|L}QYKW 6.085;5.601;5.2882;5.1915;5.174;5.0129;4.9051;4.8041;4.69;4.6134 -;-;-;-;-;-;-;-;-;- 2050 + NaN NaN 153159.3 NaN 7241 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9929 49.169 NaN 100660 35 0 9195.1 0.261 -1 PYSHRMGCCL 10 47 620.2563030719556 NaN 0 620.271484375 PEAK HCD FTMS 0 0 0 9924 14496.564453125 0.853986608424416 3 -0.09894561767578125 5 Carbamidomethyl (C),Oxidation (M) _PYSHRM(Oxidation (M))GC(Carbamidomethyl (C))CL_ ENST00000264350.7_1_4:89384727-89385075:+|nuORF 3.5964929083625545 0.337106189561315 2 VA{I|L}DEYY 7 -1 35.081 0 0 2.8325 0 0 63.983984978845065 318.1236666315063 382.10765161035135 0 0 0 0 0 0 0 0 0 VA{I|L}DEYY 2.8325 - 52 + NaN NaN 107334.5 NaN 7242 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9930 49.172 NaN 253490 35 0 46657 0.262 + 5546 FLFSSHAVF 9 49 527.7704780452104 1053.5264031572208 2 527.7701416015625 MULTI HCD FTMS 0 0 0 9924 44299.18359375 0.6681202138957285 -1 0.0262451171875 6 Unmodified _FLFSSHAVF_ REV__ENST00000269143.7_1_18:12329122-12329224:-|nuORF 11.640296217721598 0.25978676193971967 2 AV{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.3644 0 0 718.3386097638687 0 718.3386097638687 0 20.752574989159953 0 0 0 0.9247425010840047 0 0 0 AV{M(Oxidation (M))|F} 3.3644 + + 40 NaN NaN 118516.7 NaN 7243 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9931 49.176 NaN 101650 35 0 7225.2 0.261 + 9785 HYKPTPLYF 9 50 583.3055525579356 1164.596552182671 2 583.3053588867188 MULTI HCD FTMS 0 0 0 9924 37867.31640625 0.026500212547711156 62 -1.7297706604003906 7 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 26.268140514670165 0.13340543277302316 2 {[WN]|[YH]}T[KP][{I|L}P]Y{M(Oxidation (M))|F} 9 2 + 24.67 0 0 2.1183 2.1183 87.683 0 0 0 0.20567147162062227 3.968546417420388 0.20567147162062227 24.66962162338128 0 1.2059771852360797 0 0.4247425010840047 0 {[WN]|[YH]}T[KP][{I|L}P]Y{M(Oxidation (M))|F} 2.1183 - 33 NaN NaN 105465.4 NaN 7244 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9932 49.179 NaN 100990 35 0 26379 0.262 -1 0 43 469.7871795458344 937.5598061584689 2 469.7870178222656 MULTI HCD FTMS 0 0 0 9924 21883.3046875 0.5728489606532581 -1 0.0262451171875 8 NaN NaN 2 {I|L}P 2 -1 20.969 0 0 2.2366 0 0 0 724.4005831354124 724.4005831354124 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 2.2366 - 1 + NaN NaN 100252.6 NaN 7245 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9933 49.182 NaN 126580 35 0 10905 0.261 -1 0 56 641.9643489773443 3845.742435064466 6 642.2985229492188 MULTI HCD FTMS 0 0 0 9924 17034.798828125 0.5928877939366468 1 -0.039638519287109375 9 NaN NaN 2 {M(Oxidation (M))|F}N[{M(Oxidation (M))|F}T] 4 -1 15.674 0 0 0.40757 0 0 3318.5370650466907 0 3318.5370650466907 0 2.4865124202832316 0 0 0 0 0 0.7742275032520141 0 {M(Oxidation (M))|F}N[{M(Oxidation (M))|F}T] 0.40757 - 94 + NaN NaN 105302.6 NaN 7246 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9934 49.186 NaN 132760 35 0 12266 0.263 + 19468 NPTEIDKVL 9 51 514.7847509948989 1027.5549490565977 2 514.7835083007812 MULTI HCD FTMS 0 0 0 9924 39853.47265625 0.7830285882299759 -1 0.0262451171875 10 Unmodified _NPTEIDKVL_ ENSG00000130684|ENST00000252979|ZNF337;nc|ENSG00000130684|Q9Y3M9-2|ZNF337 26.268140514670165 0.13340543277302316 2 V{I|L} 2 7 25.217 0 0 2.454 0 0 797.3925187279602 0 797.3925187279602 0 5.523787536356579 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.454 + + 33 NaN NaN 100345.8 NaN 7247 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9935 49.189 NaN 90154 35 0 4679 0.261 -1 LYDLVTEKM 9 51 564.2866061156168 1126.5586592980335 2 564.286865234375 MULTI HCD FTMS 0 0 0 9924 21393.2890625 0.7550221122518516 2 -0.065948486328125 11 Oxidation (M) _LYDLVTEKM(Oxidation (M))_ ENSG00000120725|ENST00000394817|SIL1 15.248480904072842 0.22861284681709862 2 [Y{I|L}]D{I|L}V 5 -1 34.22 0 0 3.0376 0 0 0 520.2047213190061 520.2047213190061 33.841846281715924 0 0 0 0 0.7742275032520141 2 0 0 [Y{I|L}]D{I|L}V 3.0376 + + 3 + NaN NaN 98055.6 NaN 7248 2685 9924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9937 49.194 NaN 769410 35 0 141550 0.327 + 15254 LPAAGVGDMVM 11 80 546.7569669014916 1091.4993808697832 2 546.7569580078125 MULTI HCD FTMS 0 0 0 9936 471566.625 0.730787856998126 -5 0.1480865478515625 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 164.5152109175784 1.8457817257505332E-08 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 106.57 0 0 9.7633 9.7633 95.308 0 0 0 8.481461550557185 84.42603705687222 8.481461550557185 11.575773191777927 0 3.805462187404089 1.3979400086720375 0.7302046884880937 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}GG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A[VG]{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.7633;8.7027;8.4825;7.9321;7.8801;7.422;7.0404;6.5993;5.7597;5.2092 +;-;-;-;-;-;-;-;-;- + 1101 NaN NaN 205804.7 NaN 7249 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9938 49.198 NaN 621550 35 0 75361 0.261 + 28567 TPVDDRISL 9 86 508.27464044075765 1014.5347279483153 2 508.2745666503906 MULTI HCD FTMS 0 0 0 9936 271372.28125 0.517149354158312 -3 0.10213470458984375 2 Unmodified _TPVDDRISL_ ENSG00000064703|ENST00000369702|DDX20 73.1962812333195 0.00805395026373928 2 TPVDDR{I|L}S{I|L} 9 0 + 91.137 0 0 8.9831 8.9831 91.011 0 0 0 5.606121657239953 5.606121657239953 5.606121657239953 5.606121657239953 0 2.747425010840047 1.5228787452803376 0.6549471895720984 0 + + TPVDDR{I|L}S{I|L};[TP]VDDR{I|L}S{I|L};{[TV]|[{I|L}S]}PDDR{I|L}S{I|L};[VP]TDDR{I|L}S{I|L};{I|L}SPDDR{I|L}S{I|L};[VP]DTDR{I|L}S{I|L};TPV{[RE]|[WV]}[DV]S{I|L};[TP]VD[VS]{[RE]|[WV]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[PS]DR{I|L}S{I|L};[TP]VS[DV]{[RE]|[WV]}{I|L} 8.9831;8.4305;7.4223;7.1827;7.0212;5.5823;5.4339;5.1089;4.8813;4.3193 +;+;-;-;-;-;-;-;-;- + 732 + NaN NaN 178281.2 NaN 7250 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9939 49.202 NaN 596020 35 0 67508 0.261 + 11234 IYLEKLKTI 9 87 560.8523597561297 1119.6901665790592 2 560.8522338867188 MULTI HCD FTMS 0 0 0 9936 263204.5625 0.5948240386272984 -2 0.06588363647460938 3 Unmodified _IYLEKLKTI_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 88.36371040165146 0.004568843997105255 2 {I|L}Y{I|L}EK{I|L}KT{I|L} 9 0 + 118.74 0 0 10.605 10.605 98.191 0 0 0 76.93066527840834 15.871280189675971 15.871280189675971 30.879231027444405 0 2.8979400086720375 2 1.9916440611282626 0 + + {I|L}Y{I|L}EK{I|L}KT{I|L};[Y{I|L}]{I|L}EK{I|L}KT{I|L};[Y{I|L}]{I|L}EKK{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]K{I|L}KT{I|L};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]KK{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}K[Y{I|L}]{I|L}KT{I|L};{[QN]|[E{I|L}]|[KN]}KK{I|L}T{I|L}Y{I|L};[{I|L}T][VG][Y{I|L}]{I|L}KT{I|L};{[QN]|[E{I|L}]|[KN]}KK{I|L}Y{I|L}T{I|L};[{I|L}T][VG]K{I|L}T{I|L}Y{I|L} 10.605;7.8468;6.7543;5.0242;3.9318;3.7821;3.3093;3.2286;3.1784;2.7558 +;+;-;-;-;-;-;-;-;- + 385 + NaN NaN 176594.4 NaN 7251 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9940 49.205 NaN 159050 35 0 22680 0.263 + 17980 MKYGNHCYYF 10 49 442.5185006237871 1324.5336724715612 3 442.5185852050781 MULTI HCD FTMS 0 0 0 9936 45382.28515625 0.6903906582129573 3 -0.0789947509765625 4 Unmodified _MKYGNHCYYF_ ENSG00000139187|ENST00000356986|KLRG1;nc|ENSG00000139187|Q96E93|KLRG1 0.776531954647913 0.4711933975711956 2 T{M(Oxidation (M))|F} 2 9 19.464 0 0 1.4695 0 0 1058.4080407555564 0 1058.4080407555564 0 19.463950151760656 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.4695 - 6 + NaN NaN 107419 NaN 7252 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9941 49.209 NaN 102090 35 0 13057 0.261 + 700 APYEADAQL 9 41 489.23219861633885 976.4498442994777 2 489.2323303222656 MULTI HCD FTMS 0 0 0 9936 32695.91796875 0.28202155642557203 4 -0.1019439697265625 5 Unmodified _APYEADAQL_ ENSG00000174371|ENST00000366548|EXO1;nc|ENSG00000174371|Q9UQ84-4|EXO1 6.2057823575117 0.30397260197431997 2 WQ{I|L} 3 7 20.802 0 0 2.1304 0 0 531.2328968732437 0 531.2328968732437 0 18.327731244245342 0 0 0 0 0 0 0 WQ{I|L} 2.1304 - 6 NaN NaN 101327.7 NaN 7253 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9942 49.212 NaN 156590 35 0 11307 0.261 + 34928 YSLFFLQNN 9 54 573.2865262620137 1144.5584995908273 2 573.2721557617188 MULTI HCD FTMS 0 0 0 9936 17646.482421875 0.5093773361732932 4 -0.1019439697265625 6 Unmodified _YSLFFLQNN_ REV__ENSG00000102174|ENST00000379374|PHEX 3.944395688203298 0.32111559684428237 2 P 1 -1 5.4846 0 0 0.47918 0 0 147.0953680290209 897.3830050104124 1044.4783730394333 0 0 0 0 0 0 0 0 0 P 0.47918 - 10 + NaN NaN 113598.9 NaN 7254 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9943 49.215 NaN 210340 35 0 25197 0.261 + 16401 LSIRNFKNI 9 61 552.829728024832 1103.6449031164639 2 552.8297119140625 MULTI HCD FTMS 0 0 0 9936 84799.5546875 0.8960088828705586 -1 0.039638519287109375 7 Unmodified _LSIRNFKNI_ tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1 9.38312468134398 0.279288223203164 2 RY 2 8 16.198 0 0 1.4677 0 0 0 781.4563265301255 781.4563265301255 11.593793813122062 0 0 0 0 0 0 0 0 RY 1.4677 - 18 + NaN NaN 124041.9 NaN 7255 2686 9936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9945 49.22 NaN 606080 35 0 142040 0.327 + 15430 LPDKTIASL 9 66 479.28458101992226 956.5546091066445 2 479.2843322753906 MULTI HCD FTMS 0 0 0 9944 357856.625 0.6613883793200518 2 -0.052684783935546875 1 Unmodified _LPDKTIASL_ ENSG00000117625|ENST00000419091|RCOR3;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3 87.25819977447905 0.004597812622239197 2 [{I|L}P]DKT{I|L}AS{I|L} 9 0 + 87.164 0 0 9.1123 9.1123 94.603 0 0 0 10.780775416427488 14.973024840566467 10.780775416427488 10.780775416427488 0 1.805462187404089 1.5228787452803376 1.1307196863200843 0 + + [{I|L}P]DKT{I|L}AS{I|L};{I|L}PD{I|L}[KT]AS{I|L};[{I|L}P]DKTA{I|L}S{I|L};[DP]{I|L}KT{I|L}AS{I|L};[{I|L}P]DKTAS{I|L}{I|L};[DP]{I|L}KTA{I|L}S{I|L};[DP]{I|L}KTAS{I|L}{I|L};{[TV]|[{I|L}S]}A{[QN]|[E{I|L}]|[KN]}[KP]S{I|L};{[TV]|[{I|L}S]}A{[QN]|[E{I|L}]|[KN]}[KS]P{I|L};{[SA]|[TG]}{I|L}{[QN]|[E{I|L}]|[KN]}[KP]S{I|L} 9.1123;7.9852;7.5161;6.6602;6.2245;5.064;3.7724;3.5136;2.1521;2.135 +;-;-;-;-;-;-;-;-;- + 318 NaN NaN 173121.5 NaN 7256 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9946 49.225 NaN 1140500 35 0 183250 0.261 -1 MPETTETVL 9 72 518.7470885363149 1035.4796241394297 2 518.7471313476562 MULTI HCD FTMS 0 0 0 9944 504662.8125 0.5854690706755556 -6 0.17439651489257812 2 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 32.30548876998284 0.10066689432505688 2 ETV{I|L} 4 -1 47.211 0 0 4.5594 0 0 575.2264271466812 0 575.2264271466812 0 26.409328277719766 0 0 0 1.1549471895720984 0 0.8494850021680094 0 ETV{I|L} 4.5594 + + 107 NaN NaN 258783.3 NaN 7257 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9947 49.228 NaN 440950 35 0 82581 0.261 + 3885 EPNPDDPLM 9 61 522.2211908795825 1042.427828825965 2 522.2210693359375 MULTI HCD FTMS 0 0 0 9944 199266.546875 0.943274083056108 3 -0.07563400268554688 3 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 60.07390631473393 0.0174780869009295 2 [EP]N[DP]DP{I|L}{M(Oxidation (M))|F} 9 0 + 34.674 0 0 3.3263 3.3263 88.923 0 0 0 23.39780305324595 1.4868702465801533 1.4868702465801533 34.67445787282428 0 1.6069758080123702 0 0.3252574989159953 0 + + [EP]N[DP]DP{I|L}{M(Oxidation (M))|F} 3.3263 + + 57 + NaN NaN 162905.1 NaN 7258 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9948 49.232 NaN 404200 35 0 41358 0.262 + 4804 EYVEKFYRI 9 70 416.2203976508939 1245.6393635528818 3 416.2203063964844 MULTI HCD FTMS 0 0 0 9944 77253.578125 0.030439505663652933 17 -0.4632110595703125 4 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 12.174745833636585 0.2551692358394414 2 [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}] 9 0 + 38.35 0 0 3.0788 3.0788 80.538 0 0 0 17.917112166456455 3.2568864632742915 3.2568864632742915 0.8226467981605623 0 0 0 0.4247425010840047 0 + + [YE]VEK{M(Oxidation (M))|F}Y[R{I|L}];D{I|L}YEK{M(Oxidation (M))|F}Y[R{I|L}] 3.0788;3.0127 +;- + 87 + NaN NaN 153446 NaN 7259 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9949 49.235 NaN 212510 35 0 28338 0.261 + 2048 DEFEYCWDTF 10 55 452.1693813546369 1353.4863146641108 3 452.1693115234375 MULTI HCD FTMS 0 0 0 9944 106668.1953125 0.7606767794372402 5 -0.114898681640625 5 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 0.6976657623105312 0.47161084886498755 2 T{M(Oxidation (M))|F} 2 8 17.959 0 0 1.3269 0 0 1087.3600462088357 0 1087.3600462088357 0 12.474250108400469 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.3269 + + 20 + NaN NaN 130019.3 NaN 7260 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9950 49.238 NaN 401490 35 0 42521 0.261 + 4800 EYVEKFYRI 9 65 623.827069824236 1245.639586715272 2 624.3080444335938 MULTI HCD FTMS 0 0 0 9944 18489.37109375 0.05444548249910394 16 -0.44361114501953125 6 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 6.630372943996041 0.3007538891620783 2 [YV]NE{I|L}NVG{I|L} 9 6 57.145 0 0 4.5876 0 0 0 241.09982776435314 241.09982776435314 28.794934551318075 0 0 0 0 0.2742275032520141 2 0.4247425010840047 1.3807196863200843 [YV]NE{I|L}NVG{I|L} 4.5876 - 599 NaN NaN 141984.6 NaN 7261 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9951 49.242 NaN 405420 35 0 68037 0.261 + 20153 NYKDLNGNVF 10 66 592.2910450331024 1182.5675371330046 2 592.291015625 MULTI HCD FTMS 0 0 0 9944 166960.296875 0.7482230727939011 -3 0.092193603515625 7 Unmodified _NYKDLNGNVF_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 67.08073823543168 0.021044403604576784 2 [YN]K{NN|[MP]|[D{I|L}]|[EV]}N[NG]V{M(Oxidation (M))|F} 10 0 + 75.638 0 0 6.3961 6.3961 90.272 0 0 0 10.738839212801409 10.738839212801409 10.738839212801409 10.738839212801409 0 2.0356668758921828 2 0 1.0387254899964358 + + [YN]K{NN|[MP]|[D{I|L}]|[EV]}N[NG]V{M(Oxidation (M))|F};NYK{NN|[MP]|[D{I|L}]|[EV]}N[NG]V{M(Oxidation (M))|F};[YN]K{NN|[MP]|[D{I|L}]|[EV]}[RD]{I|L}{M(Oxidation (M))|F};NYKWWK{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYK[SG]{M(Oxidation (M))|F}[QP]{[QD]|[EN]|[WG]|[KD]|[RS]};NYK{NN|[MP]|[D{I|L}]|[EV]}[SG]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYK[SG]{NN|[MP]|[D{I|L}]|[EV]}K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYKYQ[QP]{[QD]|[EN]|[WG]|[KD]|[RS]};NYK{NN|[MP]|[D{I|L}]|[EV]}N[VS][KC];NYKWW[VG][KC] 6.3961;5.488;4.24;4.2171;4.0956;3.9047;3.9047;3.7374;3.7138;2.3564 +;+;-;-;-;-;-;-;-;- + 328 NaN NaN 146689 NaN 7262 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9952 49.245 NaN 579740 35 0 38206 0.261 + 18555 MVEELEKAL 9 82 539.2781883392719 1076.5418237453437 2 539.2783203125 MULTI HCD FTMS 0 0 0 9944 94910.125 1 0 0 8 Oxidation (M) _M(Oxidation (M))VEELEKAL_ ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 65.47368725323818 0.010552856507075443 2 KE{I|L}EED{I|L} 7 5 43.603 0 0 4.0503 0 0 202.1315174787125 0 202.1315174787125 0 29.7910980356722 0 0 0 2.0088643834802156 0 0.6549471895720984 0 KE{I|L}EED{I|L} 4.0503 - 428 NaN NaN 187824.2 NaN 7263 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9953 49.248 NaN 91360 35 0 11963 0.261 + 3089 EAINSDPEL 9 48 494.2351040315855 986.455655129971 2 494.2349853515625 MULTI HCD FTMS 0 0 0 9944 28508.775390625 0.4922589531884832 1 -0.03299713134765625 9 Unmodified _EAINSDPEL_ ENSG00000165480|ENST00000314759|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;nc|ENSG00000165480|Q8IX90-3|SKA3 19.361941925380144 0.1930734562688509 2 D 1 8 8.9794 0 0 0.91027 0 0 514.2387494676648 354.16733728580317 868.4060867534679 0 0 0 0 0 0.5 0 0 0 + D 0.91027 + + 6 + NaN NaN 102144.5 NaN 7264 2687 9944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9955 49.253 NaN 497700 35 0 25972 0.327 + 34274 YPDRIMNTF 9 75 586.7735938013249 1171.5326346694496 2 586.77392578125 MULTI HCD FTMS 0 0 0 9954 255292.046875 0.0755873235472877 36 -0.9812240600585938 1 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 88.36371040165146 0.004568843997105255 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 60.013 0 0 5.1226 5.1226 84.797 0 0 0 4.762036441594191 37.336615370273385 4.762036441594191 5.6246936830414995 0 1.8169015600442577 0 0.23965182871044374 0.2614393726401688 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F} 5.1226;4.6425;4.4442;4.3366;4.0698;3.9304;3.8565;3.8509;3.3975;3.2838 +;-;+;-;-;-;-;-;-;- + 1673 NaN NaN 157548 NaN 7265 2688 9954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9956 49.258 NaN 189530 35 0 25855 0.263 + 33690 YKQVCKIA 8 52 476.76641812474327 951.5182833162866 2 476.7767333984375 MULTI HCD FTMS 0 0 0 9954 17265.443359375 0.5088437865375556 1 -0.019687652587890625 2 Unmodified _YKQVCKIA_ ENSG00000197705|ENST00000359358|KLHL14;nc|ENSG00000197705|Q9P2G3-2|KLHL14 12.531546534597751 0.5015908124873912 2 [YK]Q{I|L} 4 4 23.812 0 0 2.5026 0 0 0 416.1947569231459 416.1947569231459 16.822581265925436 0 0 0 0 0.3807196863200844 0 0 0.3807196863200844 [YK]Q{I|L} 2.5026 - 44 NaN NaN 111074.8 NaN 7266 2688 9954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9957 49.261 NaN 227970 35 0 47729 0.261 + 719 AQPGYGALPP 10 42 485.75472240493787 969.4948918766758 2 485.7548522949219 MULTI HCD FTMS 0 0 0 9954 87513.734375 0.8686032756092296 -2 0.059307098388671875 3 Unmodified _AQPGYGALPP_ ENSG00000261308|ENST00000618634|FIGNL2 10.823927491677226 0.4098686510432541 2 C(Carbamidomethyl (C))A 2 9 17.959 0 0 1.8524 0 0 165.18694286927501 570.2321871393186 735.4191300085936 0 0 0 0 0 0.8494850021680094 0 0 0 C(Carbamidomethyl (C))A 1.8524 - 21 + NaN NaN 111966.4 NaN 7267 2688 9954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9958 49.265 NaN 170220 35 0 14736 0.261 + 15773 LPGGAGMYFDS 11 60 557.7476861092797 1113.4808192853593 2 557.7479248046875 MULTI HCD FTMS 0 0 0 9954 44148.2109375 0.4589497363401044 -3 0.09894561767578125 4 Unmodified _LPGGAGMYFDS_ REV__ENSG00000180318|ENST00000316824|ALX1 5.731851221503515 0.39378271418728467 2 {I|L}PAAGV 6 -1 58.889 0 0 5.2887 0 0 0 602.1563045702122 602.1563045702122 47.91956270212445 0 0 0 0 1.774227503252014 0 0 0 {I|L}PAAGV 5.2887 - 186 + NaN NaN 113333.1 NaN 7268 2688 9954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9959 49.268 NaN 265380 35 0 18264 0.261 + 15235 LPAAGVGDMV 10 60 473.23932898317673 944.4641050331535 2 473.24005126953125 MULTI HCD FTMS 0 0 0 9954 43274.71875 0.384168669118643 -3 0.09894561767578125 5 Oxidation (M) _LPAAGVGDM(Oxidation (M))V_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 43.85829265575387 0.11192494793849486 2 AGV[DG]{M(Oxidation (M))|F}V 7 3 42.255 0 0 4.474 0 0 281.17418105293126 0 281.17418105293126 0 35.265479208542914 0 0 0 1.805462187404089 0 0 0 + AGV[DG]{M(Oxidation (M))|F}V 4.474 + + 161 NaN NaN 128117 NaN 7269 2688 9954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9961 49.273 NaN 1936000 35 0 177950 0.327 + 2678 DVHGPDWHL 9 85 538.2513336976818 1074.4881144621636 2 538.2515258789062 MULTI HCD FTMS 0 0 0 9960 787097.1875 0.17978074653473713 -6 0.18112945556640625 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 120.45040980043947 0.0012363446172167195 2 DVHGPDWH{I|L} 9 0 + 84.068 0 0 7.824 7.824 92.557 0 0 0 9.392404878284268 9.392404878284268 9.392404878284268 9.392404878284268 0 2.579689690656103 1.6989700043360187 1.0189301784845295 0 + + DVHGPDWH{I|L};[HV]DGPDWH{I|L};DVHGPD{I|L}[WH];{[HG]|PP}VDPDWH{I|L};[HV]GDPDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};{[HG]|PP}[DP]W[DV]H{I|L};[HV][NS][QT]GW{M(Oxidation (M))|F};[VS][HN][QT]GW{M(Oxidation (M))|F};{[HG]|PP}VD{[DS]|[MA]|[CV]|TT}{I|L}W{M(Oxidation (M))|F} 7.824;6.9499;6.4031;5.1259;5.1259;4.4339;2.3132;2.1801;2.1801;2.0958 +;-;-;-;-;-;-;-;-;- + 1667 + NaN NaN 386351.3 NaN 7270 2689 9960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9962 49.277 NaN 299020 35 0 48032 0.261 + 32682 WPHEDAAQF 9 65 550.7435136748895 1099.472474416579 2 550.74365234375 MULTI HCD FTMS 0 0 0 9960 166159.265625 1 0 0 2 Unmodified _WPHEDAAQF_ ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2 41.8396318013385 0.056899836730939755 2 WAAQ{M(Oxidation (M))|F} 5 4 46.983 0 0 4.2732 0 0 478.17485243965 0 478.17485243965 0 38.91055354555377 0 0 0 1.2302046884880937 0 0 0.4247425010840047 WAAQ{M(Oxidation (M))|F} 4.2732 - 433 NaN NaN 134611.4 NaN 7271 2689 9960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9963 49.281 NaN 222550 35 0 16304 0.261 -1 DFPAMFCVL 9 62 529.7382066574004 1057.4618603816007 2 529.73828125 MULTI HCD FTMS 0 0 0 9960 78754.625 0.6709307312688871 -7 0.20412826538085938 3 Oxidation (M) _DFPAM(Oxidation (M))FCVL_ ENST00000412091.1_2_7:65958297-65958540:-|nuORF 18.13498045792455 0.20367413111508956 2 TV{I|L} 3 -1 37.747 0 0 3.5696 0 0 726.2499867169937 0 726.2499867169937 0 21.73393743112328 0 0 0 0.5 0 0.805462187404089 0 TV{I|L} 3.5696 - 28 NaN NaN 112887.4 NaN 7272 2689 9960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9964 49.284 NaN 146700 35 0 27979 0.261 + 10934 IYATEAHVF 9 56 525.7662956950643 1049.5180384569285 2 525.7666625976562 MULTI HCD FTMS 0 0 0 9960 58123.60546875 1 0 0 4 Unmodified _IYATEAHVF_ ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1 38.15118350030904 0.07383188072201104 2 [Y{I|L}]A 3 6 39.705 0 0 3.7832 0 0 0 699.3091714674657 699.3091714674657 21.478174818886373 0 0 0 0 0.9247425010840047 2 0 0 + [Y{I|L}]A 3.7832 + + 29 + NaN NaN 106470.2 NaN 7273 2689 9960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9965 49.288 NaN 178690 35 0 11459 0.261 + 24529 RYLENQTFRF 10 55 458.5700894947427 1372.6884390844282 3 458.90460205078125 MULTI HCD FTMS 0 0 0 9960 13748.470703125 0.3168986166376954 1 -0.02294921875 5 Unmodified _RYLENQTFRF_ ENSG00000068796|ENST00000407818|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A 4.11662792887243 0.45351373858798727 2 W{M(Oxidation (M))|F} 2 9 19.464 0 0 1.4179 0 0 1021.5349794670439 0 1021.5349794670439 0 9.731975075880328 0 0 0 0 0 0 0 W{M(Oxidation (M))|F} 1.4179 - 17 + NaN NaN 115182.2 NaN 7274 2689 9960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9966 49.291 NaN 59690 35 0 4690.4 0.261 + 25023 RYYKNIGLGF 10 44 615.8356546571274 1229.6567563810547 2 615.8349609375 MULTI HCD FTMS 0 0 0 9960 22714.779296875 0.9316336005225494 1 -0.02294921875 6 Unmodified _RYYKNIGLGF_ ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF 5.731851221503515 0.44496410492002586 2 G 1 9 6.9897 0 0 0.56843 0 0 335.1918648789047 834.4270788928578 1169.6189437717626 0 0 0 0 0 0 0 0 0 + G 0.56843 + + 16 + NaN NaN 95401.6 NaN 7275 2689 9960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9968 49.296 NaN 936030 35 0 82974 0.327 + 24323 RYGLVTNEI 9 95 532.7903462780607 1063.5661396229214 2 532.79052734375 MULTI HCD FTMS 0 0 0 9967 243397.78125 0.1471531589511191 6 -0.1508636474609375 1 Unmodified _RYGLVTNEI_ ENSG00000115267|ENST00000649979|IFIH1 76.82478488871298 0.006879825292024087 2 [Y{I|L}]{[NV]|[RG]}VTNE{I|L} 9 2 + 73.483 0 0 6.9091 6.9091 90.104 0 0 0 19.40999983289359 49.045905011532 19.40999983289359 9.208187539523749 0 1.1747425010840047 1.6989700043360187 0.5994850021680094 0.28872548999643577 [Y{I|L}]{[NV]|[RG]}VTNE{I|L};[Y{I|L}]{[NV]|[RG]}VTGGE{I|L};[Y{I|L}]K{[RE]|[WV]}NE{I|L};[YR]{[VA]|[{I|L}G]}VTNE{I|L};[Y{I|L}]K{[RE]|[WV]}GGE{I|L};[YR]{[VA]|[{I|L}G]}VTGGE{I|L} 6.9091;6.0433;5.2435;4.9259;4.3726;4.0602 -;-;-;+;-;- + 492 NaN NaN 246177.5 NaN 7276 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9969 49.3 NaN 759830 35 0 43939 0.261 + 1370 AYPHNLMTF 9 81 555.2577693209265 1108.500985708653 2 555.258056640625 MULTI HCD FTMS 0 0 0 9967 265092.875 0.24356546330823345 19 -0.5155105590820312 2 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 88.95385435242217 0.004553379958619559 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 80.688 0 0 7.279 7.279 90.797 0 0 0 12.90764376679222 53.01181751853561 12.90764376679222 9.208187539523749 0 2.31295299324845 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{[WT]|[RM]}ST{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{[WT]|[RM]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}G[SG]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DST{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DTS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S[TA][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 7.279;6.4483;5.8261;5.8054;5.2857;5.2543;5.2337;3.3178;3.2972;3.2173 -;-;-;-;-;-;-;-;-;- 2033 NaN NaN 197278.2 NaN 7277 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9970 49.304 NaN 354090 35 0 63221 0.261 + 14141 LAEDDVEAVEI 11 61 601.7951498224783 1201.5757467117564 2 601.7793579101562 MULTI HCD FTMS 0 0 0 9967 11744.5595703125 0.3110997067706602 2 -0.039264678955078125 3 Unmodified _LAEDDVEAVEI_ tr|U7T8C8|U7T8C8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00009PE=4SV=1 8.745405648335112 0.3805662881914433 2 {I|L}{M(Oxidation (M))|F}VN{[DS]|[MA]|[CV]|TT}{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]} 10 6 + 41.655 0 0 3.4667 3.4667 83.148 0 0 0 26.593793813122062 8.964687239169606 8.964687239169606 6.532125137753432 0 0 0 1.4247425010840047 0.7742275032520141 {I|L}{M(Oxidation (M))|F}VN{[DS]|[MA]|[CV]|TT}{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]};{I|L}{M(Oxidation (M))|F}V[C(Carbamidomethyl (C))R]{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]} 3.4667;2.9231 -;- 77 + NaN NaN 143082 NaN 7278 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9971 49.307 NaN 160880 35 0 13866 0.261 -1 SYMLVNENRF 10 56 644.8032623445293 1287.5919717558586 2 644.8026733398438 MULTI HCD FTMS 0 0 0 9967 39986.50390625 0.4747899759899674 -10 0.2796630859375 4 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 32.89776655970281 0.20703914202719614 2 NENV{I|L}[EC]{M(Oxidation (M))|F} 8 -1 46.904 0 0 3.6428 0 0 321.1793690412125 0 321.1793690412125 0 41.419497169889326 0 0 0 1.2302046884880937 0 0 0.4247425010840047 NENV{I|L}[EC]{M(Oxidation (M))|F} 3.6428 - 208 NaN NaN 113295 NaN 7279 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9972 49.31 NaN 86145 35 0 21546 0.261 -1 MMTSFERML 9 40 589.2555829057159 1176.4966128782316 2 589.2572631835938 MULTI HCD FTMS 0 0 0 9967 21118.318359375 0.05587325090744214 32 -0.8827705383300781 5 2 Oxidation (M) _M(Oxidation (M))MTSFERM(Oxidation (M))L_ ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF 1.6526216038709556 0.33848895094777925 2 {I|L} 1 -1 4.6041 0 0 0.39134 0 0 131.08762957920663 929.3003634088499 1060.3879929880566 0 0 0 0 0 0 0 0 0 {I|L} 0.39134 + + 1 + NaN NaN 100157.3 NaN 7280 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9973 49.314 NaN 91095 35 0 5713.9 0.264 + 28291 TLSFLLLIRSF 11 55 437.2677746036971 1308.7814944112913 3 437.2674255371094 MULTI HCD FTMS 0 0 0 9967 23569.853515625 0.8713465172428956 1 -0.0262603759765625 6 Unmodified _TLSFLLLIRSF_ REV__ENSG00000198690|ENST00000362065|FAN1;REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF 0.40826533853263924 0.41713015341995335 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.0009 0 0 1143.7028333778912 0 1143.7028333778912 0 1.3162071738729075 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0009 + + 22 + NaN NaN 110195.8 NaN 7281 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9974 49.317 NaN 92530 35 0 6444.6 0.261 + -1 SGLCCCRWN 9 39 606.7390008839195 NaN 0 606.7391967773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 3 Carbamidomethyl (C) _SGLC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))RWN_ REV__ENSG00000180694|ENST00000458549|TMEM64;REV__nc|ENSG00000180694|Q6YI46-4|TMEM64 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96842.5 NaN 7282 2690 9967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9976 49.322 NaN 337690 35 0 26743 0.327 + 13923 KYQKGFSLW 9 84 578.8111865420695 1155.607820150939 2 578.8111572265625 MULTI HCD FTMS 0 0 0 9975 208241.859375 0.6153115233313663 4 -0.10504531860351562 1 Unmodified _KYQKGFSLW_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 129.77232118876745 0.0006187813247758304 2 KYQKG{M(Oxidation (M))|F}S{I|L}W 9 0 + 66.5 0 0 5.7545 5.7545 86.38 0 0 0 44.1090471513764 14.97302484056646 14.97302484056646 6.817496819840649 0 2.4489700043360187 0 0.7742275032520141 0.4247425010840047 + + KYQKG{M(Oxidation (M))|F}S{I|L}W;KYQKG{M(Oxidation (M))|F}{I|L}SW;KY[AG]KG{M(Oxidation (M))|F}S{I|L}W;KY[AG]KG{M(Oxidation (M))|F}{I|L}SW;[YK]QK[YQ]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}SKK[YQ]{I|L}W;{[HG]|PP}PQK[YQ]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}K[YQ]{I|L}KSW;[{M(Oxidation (M))|F}V]ASK[YQ]KW;[{M(Oxidation (M))|F}V]AS{M(Oxidation (M))|F}GKSKW 5.7545;5.1646;4.9577;4.3677;4.1539;4.0546;3.8598;3.6904;3.6755;3.6426 +;-;-;-;-;-;-;-;-;- + 1306 + NaN NaN 142588.2 NaN 7283 2691 9975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9977 49.326 NaN 158700 35 0 18313 0.263 + 24575 RYLNKAFHIW 10 44 449.9155019396544 1346.7246764191632 3 449.915771484375 MULTI HCD FTMS 0 0 0 9975 31132.658203125 0.7569606293992619 -5 0.128204345703125 2 Unmodified _RYLNKAFHIW_ ENSG00000151503|ENST00000534548|NCAPD3 20.580933911654288 0.31860490502175054 2 {I|L}W 2 8 30.217 0 0 2.2437 0 0 1029.5510362094906 0 1029.5510362094906 0 19.731975075880328 0 0 0 0.9247425010840047 0 0 0 + {I|L}W 2.2437 + + 30 NaN NaN 114264.7 NaN 7284 2691 9975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9978 49.33 NaN 89461 35 0 7667.9 0.261 + 9786 HYKPTPLYF 9 52 583.3055525579356 1164.596552182671 2 583.306396484375 MULTI HCD FTMS 0 0 0 9975 25734.23828125 0.018009271554664804 68 -1.8603286743164062 3 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 17.11289562659939 0.2125047172822487 2 Y{M(Oxidation (M))|F} 2 7 25.217 0 0 2.1653 0 0 836.4539270049066 0 836.4539270049066 0 2.2577249674798594 0 0 0 0.4247425010840047 0 0 0 + Y{M(Oxidation (M))|F} 2.1653 + + 11 NaN NaN 102528.9 NaN 7285 2691 9975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9980 49.335 NaN 1582600 35 0 200550 0.327 + 15255 LPAAGVGDMVM 11 96 546.7569669014916 1091.4993808697832 2 546.7573852539062 MULTI HCD FTMS 0 0 0 9979 611141.625 0.9470875477163007 1 -0.036197662353515625 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 164.5152109175784 1.8457817257505332E-08 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 96.456 0 0 8.837 8.837 91.051 0 0 0 19.58607314841774 69.96299149683867 19.58607314841774 6.051985655421348 0 3.4049471895720984 1.5228787452803376 0.7059771852360797 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[KS]HG[DP]{[DS]|[MA]|[CV]|TT}[H{I|L}];[HV]DG{[CP]|[EA]}H{I|L}{[QS]|[NT]};[HV]DG[DP][HT][KS];[YT]S[HN][KQ]{[QS]|[NT]};[YT]S[HN]QQ[KS];[YT]S[HN]{[DS]|[MA]|[CV]|TT}[R{I|L}] 8.837;8.2825;7.5252;6.6856;1.4335;0.7231;0.42623;0.26366;0.26366;0.17488 +;-;-;-;-;-;-;-;-;- + 2099 NaN NaN 335983 NaN 7286 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9981 49.339 NaN 1174500 35 0 118920 0.261 -1 LEMPWGTTM 9 89 554.2461272588474 1106.4777015844948 2 554.2462768554688 MULTI HCD FTMS 0 0 0 9979 460769.59375 0.6662101501818897 -3 0.062213897705078125 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LEMPWGTTM_ ENST00000357003.7_1_3:119301053-119301155:+|nuORF 15.847184025352803 0.2234401846867398 2 DVHG{[ET]|[MV]}{M(Oxidation (M))|F} 7 -1 64.046 0 0 5.7883 0 0 0 318.12018762760005 318.12018762760005 36.06446953481715 0 0 0 0 1 1.5228787452803376 1.1861818737241734 0 DVHG{[ET]|[MV]}{M(Oxidation (M))|F} 5.7883 - 1222 + NaN NaN 265155.1 NaN 7287 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9982 49.343 NaN 609380 35 0 68994 0.261 + 28568 TPVDDRISL 9 86 508.27464044075765 1014.5347279483153 2 508.274658203125 MULTI HCD FTMS 0 0 0 9979 321966.625 0.6135660997222111 3 -0.092041015625 3 Unmodified _TPVDDRISL_ ENSG00000064703|ENST00000369702|DDX20 81.9152076656658 0.005232646987511684 2 TPVDDR{I|L}S{I|L} 9 0 + 88.082 0 0 8.682 8.682 89.058 0 0 0 1.5838731175942797 1.5838731175942797 1.5838731175942797 1.5838731175942797 0 2.723197507588033 1.5228787452803376 0.6747425010840047 0 + + TPVDDR{I|L}S{I|L};[TP]VDDR{I|L}S{I|L};{[TV]|[{I|L}S]}PDDR{I|L}S{I|L};[VP]TDDR{I|L}S{I|L};{I|L}SPDDR{I|L}S{I|L};[TP]VD[KS]AAN{I|L};[TP]VD[VS]{[RE]|[WV]}{I|L};TPV{[RE]|[WV]}[DV]S{I|L};[TP]VD[KS]QQ{I|L};[TP]VD[KS]AA{I|L}N 8.682;8.5259;7.0769;7.0474;6.3397;5.5206;5.3861;5.2308;5.0894;4.7493 +;+;-;-;-;-;-;-;-;- + 535 + NaN NaN 174551.8 NaN 7288 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9983 49.346 NaN 529200 35 0 57815 0.261 + 11235 IYLEKLKTI 9 75 560.8523597561297 1119.6901665790592 2 560.8523559570312 MULTI HCD FTMS 0 0 0 9979 272472.5 0.6157689339632042 4 -0.11159896850585938 4 Unmodified _IYLEKLKTI_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 88.36371040165146 0.004568843997105255 2 {I|L}Y{I|L}EK{I|L}KT{I|L} 9 0 + 108.39 0 0 9.6806 9.6806 96.983 0 0 0 79.00765885819405 15.213176602739523 15.213176602739523 21.541811883425567 0 2.9291746928241125 2 1.9258337024346173 0 + + {I|L}Y{I|L}EK{I|L}KT{I|L};[Y{I|L}]{I|L}EK{I|L}KT{I|L};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]K{I|L}KT{I|L};{[QN]|[E{I|L}]|[KN]}[K{I|L}]Y{I|L}KT{I|L};{[QN]|[E{I|L}]|[KN]}[K{I|L}]KT{I|L}Y{I|L};[{I|L}T][K{I|L}][VG]T{I|L}Y{I|L};{[QN]|[E{I|L}]|[KN]}[K{I|L}]K[Y{I|L}]T{I|L};[{I|L}T][K{I|L}][SG]{I|L}{I|L}Y{I|L} 9.6806;7.7567;4.494;3.5098;2.3666;1.9584;1.727;1.3341 +;+;-;-;-;-;-;- + 204 + NaN NaN 164562.6 NaN 7289 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9984 49.35 NaN 674160 35 0 31850 0.262 -1 0 93 473.2186835671037 944.4228142010074 2 473.21868896484375 MULTI HCD FTMS 0 0 0 9979 177412.8125 0.6780442997239076 -2 0.039264678955078125 5 NaN NaN 2 [DV]HGSVHV 8 -1 30.518 0 0 3.2314 0 0 0 110.99748041594856 110.99748041594856 14.24986463275421 0 0 0 0 0.6989700043360187 1.6989700043360187 0.3252574989159953 0 [DV]HGSVHV 3.2314 - 1724 NaN NaN 190093 NaN 7290 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9985 49.353 NaN 338570 35 0 39466 0.261 + 15311 LPAPIEKTI 9 63 491.3027199340736 980.5908869349472 2 491.30267333984375 MULTI HCD FTMS 0 0 0 9979 137467.875 0.6919194493047416 -3 0.062213897705078125 6 Unmodified _LPAPIEKTI_ nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 63.960520009940105 0.0120409805053046 2 {I|L}PAP 4 5 54.781 0 0 5.5866 0 0 0 599.3399752252561 599.3399752252561 33.86623162815269 0 0 0 0 1 1.5228787452803376 0 0 + {I|L}PAP 5.5866 + + 75 + NaN NaN 136171 NaN 7291 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9986 49.356 NaN 121010 35 0 31351 0.261 + 9909 ICPCPHLAL 9 37 483.7482691153328 965.4819852974656 2 483.74810791015625 MULTI HCD FTMS 0 0 0 9979 33628.84375 0.08311877597647606 9 -0.266143798828125 7 Unmodified _ICPCPHLAL_ REV__tr|U7SFS1|U7SFS1_FUSNUCytokininriboside5'-monophosphatephosphoribohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02213PE=3SV=1 14.581692164780916 0.23437375358055648 2 {I|L}A{I|L} 3 -1 36.198 0 0 3.7492 0 0 650.2612782209 0 650.2612782209 0 30.713337517843655 0 0 0 1 0 0 0 {I|L}A{I|L} 3.7492 + + 14 NaN NaN 113220.2 NaN 7292 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9987 49.36 NaN 129810 35 0 8730.2 0.261 -1 RVMHAPTL 8 56 470.75591315281304 939.4972733724261 2 470.75567626953125 MULTI HCD FTMS 0 0 0 9979 33100.96875 0.6564500629231919 4 -0.11159896850585938 8 Oxidation (M) _RVM(Oxidation (M))HAPTL_ ENSG00000102452|ENST00000251127|NALCN 2.577480529830294 0.5381683276125971 2 DGY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 -1 8.4164 0 0 0.89584 0 0 329.29211653294004 0 329.29211653294004 0 -1.2248627423174732 -1.2248627423174732 0 0 0 0 0 0 DGY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 0.89584 - 33 + NaN NaN 99749.1 NaN 7293 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9988 49.363 NaN 77704 35 0 5787.5 0.261 -1 HFIAEHYMF 9 52 605.7705405955054 1209.5265282578107 2 605.7693481445312 MULTI HCD FTMS 0 0 0 9979 23224.537109375 0.15043575266387615 42 -1.1853713989257812 9 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 11.640296217721598 0.25978676193971967 2 H{M(Oxidation (M))|F} 2 -1 20.261 0 0 1.6751 0 0 0 922.3771714475603 922.3771714475603 7.0732594320775615 0 0 0 0 0.3807196863200844 0 0 0 H{M(Oxidation (M))|F} 1.6751 + + 54 + NaN NaN 85919.5 NaN 7294 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9989 49.366 NaN 68021 35 0 6201.8 0.261 -1 YPEGFEIHSM 10 39 613.2633945636383 1224.5122361940764 2 613.2973022460938 MULTI HCD FTMS 0 0 0 9979 30986.189453125 0.10434597504893398 -25 0.6745414733886719 10 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 17.11289562659939 0.35104376501799556 2 YPE 3 -1 31.198 0 0 2.5478 0 0 0 832.3341980353041 832.3341980353041 27.703037561203843 0 0 0 0 0.5 0 0 0 YPE 2.5478 + + 13 + NaN NaN 105687.9 NaN 7295 2692 9979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9991 49.371 NaN 1476400 35 0 242420 0.327 -1 MPETTETVL 9 80 518.7470885363149 1035.4796241394297 2 518.7471313476562 MULTI HCD FTMS 0 0 0 9990 861980.3125 1 0 0 1 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 26.88365393820708 0.12808753336095696 2 ETV{I|L} 4 -1 45.455 0 0 4.3898 0 0 575.224412986525 0 575.224412986525 0 28.465285049249793 0 0 0 0.9247425010840047 0 0.8494850021680094 0 ETV{I|L} 4.3898 + + 151 NaN NaN 302763.2 NaN 7296 2693 9990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9992 49.376 NaN 1674500 35 0 411340 0.262 + 24333 RYIDRIHIF 9 71 411.5679849081682 1231.6821253247047 3 411.5680236816406 MULTI HCD FTMS 0 0 0 9990 656313.1875 0.2536215114096955 -5 0.11809921264648438 2 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 18.721224879955976 0.19860910938195908 2 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 5 4 37.263 0 0 3.0254 0 0 547.2746628028294 0 547.2746628028294 0 17.798859261803983 0 0 0 1.5 0 0 0.3054621874040891 + R[H{I|L}]{I|L}{M(Oxidation (M))|F} 3.0254 + + 46 NaN NaN 342551.6 NaN 7297 2693 9990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9993 49.379 NaN 251740 35 0 44644 0.261 + 10639 IPTIQSVTV 9 62 479.28458101992226 956.5546091066445 2 479.2842102050781 MULTI HCD FTMS 0 0 0 9990 58273.1171875 0.10770001123932826 8 -0.22994613647460938 3 Unmodified _IPTIQSVTV_ REV__ENSG00000140015|ENST00000322893|KCNH5 32.78568957990786 0.09846250359632436 2 SV[YC(Carbamidomethyl (C))]VS{I|L} 7 -1 30.735 0 0 3.2131 0 0 130.16210529980702 0 130.16210529980702 0 5.958771236109239 0 0 0 0.6549471895720985 0 0.6694451763165201 0 SV[YC(Carbamidomethyl (C))]VS{I|L} 3.2131 - 145 + NaN NaN 125939.3 NaN 7298 2693 9990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9994 49.383 NaN 206630 35 0 14580 0.261 + -1 DVHEIMAGHD 10 61 570.241422786628 1138.468292640056 2 570.2410278320312 MULTI HCD FTMS 0 0 0 9990 69330.796875 0.8475849916190312 -2 0.04920196533203125 4 Oxidation (M) _DVHEIM(Oxidation (M))AGHD_ REV__ENSG00000170921|ENST00000689528|TANC2;REV__nc|ENSG00000170921|Q9HCD6-2|TANC2;REV__nc|ENSG00000170921|Q9HCD6|TANC2 6.2057823575117 0.44245551207394906 2 D{I|L}[DC]HVD 7 -1 35.534 0 0 3.1212 0 0 323.13804824043126 0 323.13804824043126 0 19.85940408613523 0 0 0 0 0 0.3807196863200844 0 D{I|L}[DC]HVD 3.1212 - 171 NaN NaN 126975.3 NaN 7299 2693 9990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9995 49.386 NaN 247670 35 0 28986 0.261 + -1 SCCCGWWL 8 68 564.7071003941556 1127.3996478551112 2 564.7068481445312 MULTI HCD FTMS 0 0 0 9990 107085.1953125 1 0 0 5 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))GWWL_ REV__ENST00000372870.5_1_9:131103082-131105463:+|nuORF 2.577480529830294 0.5381683276125971 2 Y{I|L} 2 -1 17.435 0 0 1.5465 0 0 833.2667103498062 0 833.2667103498062 0 10.445312593723983 0 0 0 0.2742275032520141 0 0 0 Y{I|L} 1.5465 - 42 NaN NaN 133306.9 NaN 7300 2693 9990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9997 49.391 NaN 426330 35 0 49083 0.327 + 31879 VYNENLVHMI 10 79 624.3082502343294 1246.6019475354587 2 624.3084106445312 MULTI HCD FTMS 0 0 0 9996 217929.90625 0.5922086773567993 2 -0.055774688720703125 1 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 103.82355648334675 5.879419037132958E-05 2 VYNEN{I|L}VH{M(Oxidation (M))|F}{I|L} 10 0 + 102.83 0 0 8.2486 8.2486 91.718 0 0 0 60.20992460152882 7.9390028798052015 7.9390028798052015 9.164539485499262 0 2.809894379144197 2 0.3252574989159953 0.6861818737241735 + + VYNEN{I|L}VH{M(Oxidation (M))|F}{I|L};VYGGEN{I|L}VH{M(Oxidation (M))|F}{I|L};[YV]NEN{I|L}VH{M(Oxidation (M))|F}{I|L};VYNEGG{I|L}VH{M(Oxidation (M))|F}{I|L};[YV]GGEN{I|L}VH{M(Oxidation (M))|F}{I|L};VYGGEGG{I|L}VH{M(Oxidation (M))|F}{I|L};VYNE[{I|L}A]AAH{M(Oxidation (M))|F}{I|L};[YN]VEN{I|L}VH{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YV]N{I|L}VH{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[Q{I|L}]{I|L}[SG]ENM{I|L} 8.2486;7.5135;7.2756;7.2684;6.2954;6.2308;5.7428;4.8337;3.9753;3.4704 +;-;+;-;-;-;-;-;-;- + 1147 + NaN NaN 151210.1 NaN 7301 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9998 49.395 NaN 386350 35 0 22877 0.261 + 34275 YPDRIMNTF 9 78 586.7735938013249 1171.5326346694496 2 586.7741088867188 MULTI HCD FTMS 0 0 0 9996 184687.109375 0.05468248800628226 42 -1.1921234130859375 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 55.23464941255904 0.024247875903973527 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 66.794 0 0 5.7014 5.7014 84.734 0 0 0 17.632192780232785 30.59562510389476 17.632192780232785 3.0102999566398125 0 1.3494850021680094 1.3979400086720375 0 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGTY{M(Oxidation (M))|F} 5.7014;5.4444;5.1875;4.9154;4.7651;4.6784;4.6584;4.4015;3.9791;3.8924 +;-;-;-;-;-;-;-;-;- + 1075 NaN NaN 146888.1 NaN 7302 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 9999 49.399 NaN 332520 35 0 53187 0.261 -1 EPNPDDPLM 9 56 522.2211908795825 1042.427828825965 2 522.221435546875 MULTI HCD FTMS 0 0 0 9996 133978.171875 0.6342165265913969 10 -0.29248809814453125 3 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 25.399314129420986 0.14091189997036632 2 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 23.812 0 0 2.2843 0 0 552.2195596382682 0 552.2195596382682 0 17.35863111416478 0 0 0 1 0 0 0 D[{I|L}P]{M(Oxidation (M))|F} 2.2843 + + 20 + NaN NaN 135370 NaN 7303 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10000 49.402 NaN 288130 35 0 47617 0.261 + 8275 GVAPFTIAR 9 50 466.27169149027543 930.5288300473509 2 466.2715759277344 MULTI HCD FTMS 0 0 0 9996 88274.5 0.5433487441384778 -2 0.05582427978515625 4 Unmodified _GVAPFTIAR_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 24.020572477871973 0.15282392193088168 2 [VG]A[TP]{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 9 2 + 42.386 0 0 4.555 4.555 90.615 0 0 0 38.406294381717956 5.6424927368725974 5.6424927368725974 42.38569446843833 0 1.4247425010840047 1.5228787452803376 0.4247425010840047 0 [VG]A[TP]{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 4.555 - 20 + NaN NaN 125124.2 NaN 7304 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10001 49.406 NaN 707920 35 0 59007 0.261 + 4188 ETTVYVIVR 9 84 540.3082066507787 1078.6018603683574 2 540.3082885742188 MULTI HCD FTMS 0 0 0 9996 132525.28125 0.5378847885393544 -3 0.06882858276367188 5 Unmodified _ETTVYVIVR_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 51.629811660486645 0.02929079705179888 2 {[ET]|[MV]}TVYV{I|L}VR 9 0 + 53.75 0 0 4.9833 4.9833 90.711 0 0 0 27.012874368749074 16.478174818886373 16.478174818886373 31.848206126982323 0 1.1688265215345564 0 0 0 + + {[ET]|[MV]}TVYV{I|L}VR;{[ET]|[MV]}T{I|L}{I|L}[{M(Oxidation (M))|F}T]VR;{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}YV{I|L}VR;{[HG]|PP}HVYV{I|L}VR 4.9833;2.0306;1.4221;0.28044 +;-;-;- + 550 + NaN NaN 187334 NaN 7305 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10002 49.409 NaN 345830 35 0 62757 0.261 + 5366 FGHAEVVSL 9 61 479.75350199363135 957.4924510540627 2 479.7535095214844 MULTI HCD FTMS 0 0 0 9996 140980.046875 0.74350217000856 -1 0.019626617431640625 6 Unmodified _FGHAEVVSL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 37.97399986684836 0.07464525285885698 2 VVS{I|L} 4 5 47.607 0 0 4.9721 0 0 541.2272816388687 0 541.2272816388687 0 18.935078169319297 0 0 0 1.2614393726401687 0 0.3054621874040891 0 + VVS{I|L} 4.9721 + + 184 NaN NaN 137743.7 NaN 7306 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10003 49.412 NaN 235830 35 0 24162 0.261 + 20154 NYKDLNGNVF 10 66 592.2910450331024 1182.5675371330046 2 592.2882690429688 MULTI HCD FTMS 0 0 0 9996 101498.1328125 0.45485810840806956 4 -0.11824798583984375 7 Unmodified _NYKDLNGNVF_ ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1 32.037481411007896 0.2145045983280644 2 [YN]K{NN|[MP]|[D{I|L}]|[EV]}NGNV{M(Oxidation (M))|F} 10 0 + 43.663 0 0 3.6922 3.6922 87.28 0 0 0 14.95690335043292 14.48206988169865 14.48206988169865 14.287887749990343 0 1.024227503252014 1.6989700043360187 0 0.4247425010840047 + + [YN]K{NN|[MP]|[D{I|L}]|[EV]}NGNV{M(Oxidation (M))|F};[YN]K{NN|[MP]|[D{I|L}]|[EV]}[RD]{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[NV]|[RG]}[RD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[NV]|[RG]}{M(Oxidation (M))|F}N[RN]{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[NV]|[RG]}{M(Oxidation (M))|F}[RD]{I|L}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}A{[NV]|[RG]}{M(Oxidation (M))|F}NGNV{M(Oxidation (M))|F};[YN]K{NN|[MP]|[D{I|L}]|[EV]}N[KC][VS];{[CT]|[{M(Oxidation (M))|F}G]}{[RE]|[WV]}[HM]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]K{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))K]G[VS];{[DS]|[MA]|[CV]|TT}A{[NV]|[RG]}[RD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.6922;2.484;2.3928;1.8271;1.6781;1.4966;1.1996;1.1358;1.1181;0.99935 +;-;-;-;-;-;-;-;-;- + 292 NaN NaN 125980.2 NaN 7307 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10004 49.415 NaN 174450 35 0 11883 0.263 + 31279 VWEYSSSI 8 54 485.7302087528339 969.4458645724678 2 485.74554443359375 MULTI HCD FTMS 0 0 0 9996 26626.607421875 0.7703132135434495 -2 0.05582427978515625 8 Unmodified _VWEYSSSI_ ENSG00000137699|ENST00000341846|TRIM29;nc|ENSG00000137699|Q14134-2|TRIM29 12.531546534597751 0.5015908124873912 2 V{M(Oxidation (M))|F} 2 7 30.93 0 0 3.1905 0 0 0 720.3090304010374 720.3090304010374 8.458158265940554 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 V{M(Oxidation (M))|F} 3.1905 - 85 + NaN NaN 120521 NaN 7308 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10005 49.419 NaN 320160 35 0 43010 0.261 + 25442 SESLFVSNHAY 11 57 627.2936319800564 1252.5727110269127 2 627.2946166992188 MULTI HCD FTMS 0 0 0 9996 64369.76953125 0.18580296132648116 -4 0.09508895874023438 9 Unmodified _SESLFVSNHAY_ ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 89.60864043982822 0.00844057412745266 2 {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY 11 0 + 87.943 0 0 7.021 7.021 93.62 0 0 0 7.367585652254178 63.26207001795292 7.367585652254178 25.25631401669432 0 3.524227503252014 0 2.2302046884880937 0 + + {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSGGHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}[SG][VG]HAY;{[ES]|[DT]|[{I|L}C]}S{I|L}[YQ][VG]HAY;{[ES]|[DT]|[{I|L}C]}S[HV][VS]{M(Oxidation (M))|F}QAY 7.021;5.0046;3.0698;2.238;0.77866 +;-;-;-;- + 336 NaN NaN 134064.9 NaN 7309 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10006 49.422 NaN 195040 35 0 27302 0.261 + 22558 QSHSAEIESQI 11 57 614.7944127593282 1227.5742725854564 2 614.7943725585938 MULTI HCD FTMS 0 0 0 9996 82975.7734375 0.8760870664447544 -2 0.05582427978515625 10 Unmodified _QSHSAEIESQI_ ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1 16.838377633395154 0.31036907537388464 2 Q{I|L}SQ{I|L} 5 6 55.701 0 0 4.5375 0 0 640.2457752912125 0 640.2457752912125 0 46.74865027867405 0 0 0 1.3494850021680094 0 0.4247425010840047 0 Q{I|L}SQ{I|L} 4.5375 - 48 NaN NaN 112209.6 NaN 7310 2694 9996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10008 49.427 NaN 7353900 35 0 625550 0.327 + 2679 DVHGPDWHL 9 112 538.2513336976818 1074.4881144621636 2 538.251708984375 MULTI HCD FTMS 0 0 0 10007 4378095 1 0 0 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 180.00974506902125 1.0762292318080308E-12 2 [DV]HGPDWH{I|L} 9 0 + 99.821 0 0 9.2901 9.2901 89.13 0 0 0 0.22899155202514976 0.22899155202514976 0.22899155202514976 0.22899155202514976 0 2.7134679910804405 1.5228787452803376 1.4604093769761874 0 + + [DV]HGPDWH{I|L};DVHGPDWH{I|L};[HV]DGPDWH{I|L};[DV]HGPWDH{I|L};[HV]DGPWDH{I|L};[DV]HGPWHD{I|L};[DV]HGPD{I|L}[WH];{[HG]|PP}[DV]PDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};[DV]HGPWH{I|L}D 9.2901;9.2688;8.058;7.5914;6.3592;6.3105;5.886;5.7734;5.3093;5.2082 +;+;-;-;-;-;-;-;-;- + 6347 NaN NaN 884422.6 NaN 7311 2695 10007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10009 49.431 NaN 455980 35 0 66686 0.261 -1 MPVMEQSVL 9 78 533.2513596717272 1064.4881664102543 2 533.2517700195312 MULTI HCD FTMS 0 0 0 10007 104087.5703125 0.4801791444129728 13 -0.35462188720703125 2 2 Oxidation (M) _M(Oxidation (M))PVM(Oxidation (M))EQSVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 26.268140514670165 0.13340543277302316 2 SV{I|L} 3 -1 27.324 0 0 2.5669 0 0 747.2944813459 0 747.2944813459 0 2.6220238880632287 0 0 0 0.3807196863200844 0 0.9247425010840047 0 SV{I|L} 2.5669 + + 415 NaN NaN 154977.1 NaN 7312 2695 10007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10010 49.435 NaN 188960 35 0 19068 0.261 + 3749 ENHRQRTGW 9 74 592.2910450331024 1182.5675371330046 2 592.2908325195312 MULTI HCD FTMS 0 0 0 10007 53971.38671875 0.24186969938059455 5 -0.13784408569335938 3 Unmodified _ENHRQRTGW_ ENST00000554594.1_1_14:73141042-73159862:-|nuORF 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 9 26.198 0 0 2.2153 0 0 757.3555775373062 0 757.3555775373062 0 0.6639311543577975 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.2153 - 340 NaN NaN 115243.7 NaN 7313 2695 10007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10011 49.438 NaN 556490 35 0 44655 0.261 + 14172 LAIDTEERL 9 80 530.2878150989482 1058.5610772646962 2 530.2880249023438 MULTI HCD FTMS 0 0 0 10007 183893.453125 0.8627536173664083 -2 0.055843353271484375 4 Unmodified _LAIDTEERL_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 90.13494162714682 0.004522430935000059 2 {I|L}A{I|L}DTEER{I|L} 9 0 + 94.317 0 0 8.91 8.91 96.439 0 0 0 84.85350983237737 8.256886463274284 8.256886463274284 23.748258635219372 0 2.3193415193665468 1.6989700043360187 1.274227503252014 0 + + {I|L}A{I|L}DTEER{I|L};[{I|L}A]{I|L}DTEER{I|L};[{I|L}A]{I|L}DT[NG][TA]A{I|L};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}A]TEER{I|L} 8.91;6.6665;5.2088;2.4636 +;+;-;- + 503 + NaN NaN 165225.5 NaN 7314 2695 10007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10012 49.442 NaN 353790 35 0 117780 0.261 -1 FISDWLYVQKM 11 46 482.57681614102216 1444.7086190232665 3 482.5767517089844 MULTI HCD FTMS 0 0 0 10007 55299.26953125 0.864781643232665 1 -0.019557952880859375 5 Oxidation (M) _FISDWLYVQKM(Oxidation (M))_ nc|ENSG00000293458|O60774|FMO6P 0.5059551277355931 0.4167017191902429 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 143353.3 NaN 7315 2695 10007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10014 49.447 NaN 320310 35 0 58966 0.326 + -1 HNMAEPFVLE 10 57 601.7791368793294 1201.5437208254586 2 601.7793579101562 MULTI HCD FTMS 0 0 0 10013 186477.171875 0.8326699856609179 6 -0.18082046508789062 1 Oxidation (M) _HNM(Oxidation (M))AEPFVLE_ REV__ENSG00000135638|ENST00000258106|EMX1 22.736283301280096 0.29844449404982915 2 E{[DS]|[MA]|[CV]|TT}NVE{I|L} 7 -1 53.32 0 0 4.4376 0 0 397.1677418439469 0 397.1677418439469 0 42.35100095250324 0 0 0 0.8494850021680094 0 0.3807196863200844 1.2302046884880937 E{[DS]|[MA]|[CV]|TT}NVE{I|L} 4.4376 - 151 NaN NaN 139090.5 NaN 7316 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10015 49.451 NaN 371030 35 0 12248 0.261 + -1 DVEIEEKMD 9 65 562.2439788729704 1122.4734048127407 2 562.2440795898438 MULTI HCD FTMS 0 0 0 10013 96855.1875 0.8119624437707417 2 -0.062473297119140625 2 Oxidation (M) _DVEIEEKM(Oxidation (M))D_ REV__ENSG00000122870|ENST00000373886|BICC1;REV__nc|ENSG00000122870|Q9H694-2|BICC1 16.149105407346934 0.22083165093524068 2 DVH{NN|[MP]|[D{I|L}]|[EV]}H 6 -1 42.893 0 0 3.8213 0 0 0 403.1351717584594 403.1351717584594 18.428637390930263 0 0 0 0 0.5 0 1.1861818737241734 0 DVH{NN|[MP]|[D{I|L}]|[EV]}H 3.8213 - 118 + NaN NaN 150382.5 NaN 7317 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10016 49.455 NaN 176240 35 0 22223 0.261 + 24337 RYIDRIHIF 9 59 616.8488084441427 1231.6830639550853 2 616.8487548828125 MULTI HCD FTMS 0 0 0 10013 83383.1484375 0.7731687825071141 -2 0.055774688720703125 3 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 37.771325159832564 0.07557564330356273 2 RY{I|L}D[R{I|L}]H{I|L}{M(Oxidation (M))|F} 9 0 + 44.887 0 0 3.6444 3.6444 86.095 0 0 0 40.28327826237401 4.991596866368013 4.991596866368013 9.771212547196619 0 1.805462187404089 0 0 0 + + RY{I|L}D[R{I|L}]H{I|L}{M(Oxidation (M))|F};RY{I|L}[R{I|L}]DH{I|L}{M(Oxidation (M))|F};RY{I|L}E[RV]H{I|L}{M(Oxidation (M))|F} 3.6444;2.8511;2.671 +;-;- + 159 + NaN NaN 106783.5 NaN 7318 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10017 49.458 NaN 138930 35 0 9296.3 0.261 -1 LPYVGKELNM 10 50 590.3076460673179 1178.6007392014358 2 590.3074340820312 MULTI HCD FTMS 0 0 0 10013 26638.70703125 0.4276487551922774 1 -0.029560089111328125 4 Oxidation (M) _LPYVGKELNM(Oxidation (M))_ ENSG00000124570|ENST00000380539|SERPINB6 13.614867670302875 0.3837631382804675 2 {I|L}PYV 4 -1 31.983 0 0 2.7136 0 0 0 703.3084722619116 703.3084722619116 24.535247228595267 0 0 0 0 0.3054621874040891 0 0 0 {I|L}PYV 2.7136 + + 27 + NaN NaN 103584.9 NaN 7319 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10018 49.461 NaN 185190 35 0 27631 0.262 -1 RYLSPKWIKMF 11 41 495.6074878676573 1483.800634203172 3 495.60760498046875 MULTI HCD FTMS 0 0 0 10013 66347.1640625 0.8139207599014183 -1 0.019557952880859375 5 Oxidation (M) _RYLSPKWIKM(Oxidation (M))F_ ENSG00000156976|ENST00000323963|EIF4A2;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;nc|ENSG00000156976|Q14240-2|EIF4A2 28.181266145913348 0.21306642658310945 2 W{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 40.433 0 0 2.725 0 0 744.427554553792 0 744.427554553792 0 34.94850021680094 0 0 0 1 0 0 0 W{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.725 + + 61 + NaN NaN 118016.7 NaN 7320 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10019 49.465 NaN 75014 35 0 5877.8 0.261 + 9787 HYKPTPLYF 9 43 583.3055525579356 1164.596552182671 2 583.3046875 MULTI HCD FTMS 0 0 0 10013 20391.251953125 0.014270155959151999 73 -1.9718360900878906 6 Unmodified _HYKPTPLYF_ ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4 19.256988751693697 0.19398022840297344 2 S 1 9 6.9897 0 0 0.60018 0 0 237.14875052427107 837.389958955331 1074.5387094796022 0 0 0 0 0 0 0 0 0 S 0.60018 - 7 + NaN NaN 93713.7 NaN 7321 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10020 49.468 NaN 132100 35 0 13139 0.262 + 23550 RPAVLDPAL 9 39 476.2847831765647 950.5550134199294 2 476.28515625 MULTI HCD FTMS 0 0 0 10013 33035.515625 0.2994623192543076 -4 0.11159896850585938 7 Unmodified _RPAVLDPAL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 20.41453444215458 0.18397929046831515 2 {I|L}DPA{I|L} 5 4 45.723 0 0 4.8101 0 0 423.259080955275 0 423.259080955275 0 32.624066225287685 0 0 0 1.1989700043360187 0 0 0 + {I|L}DPA{I|L} 4.8101 + + 45 NaN NaN 108285.7 NaN 7322 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10021 49.471 NaN 73831 35 0 4940.5 0.261 -1 0 42 442.05546996116385 NaN 0 442.0547180175781 PEAK HCD FTMS 0 0 0 10013 5045.00439453125 0.22090107778806295 17 -0.47216033935546875 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100587.9 NaN 7323 2696 10013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10023 49.476 NaN 1534000 35 0 192950 0.327 + 15256 LPAAGVGDMVM 11 105 546.7569669014916 1091.4993808697832 2 546.7576293945312 MULTI HCD FTMS 0 0 0 10022 555792.3125 0.8613125939264844 6 -0.18755340576171875 1 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 180.00974506902125 6.669720871725447E-14 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 101.09 0 0 9.2611 9.2611 91.484 0 0 0 14.559319556497258 6.747425010840061 6.747425010840061 6.051985655421362 0 3.504432191740108 1.154901959985743 1.0114393726401687 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}QVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A{I|L}GVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}N{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]{I|L}GG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PA]A[VG]{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.2611;8.7067;7.9962;7.9273;7.3728;7.2623;7.1566;6.6624;5.8227;5.1578 +;-;-;-;-;-;-;-;-;- + 4551 NaN NaN 316582 NaN 7324 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10024 49.481 NaN 516440 35 0 67495 0.261 + 18938 NAFKEITTM 9 65 527.7666792903734 1053.5188056475467 2 527.7658081054688 MULTI HCD FTMS 0 0 0 10022 218538.703125 0.5661684478680918 -2 0.0491180419921875 2 Unmodified _NAFKEITTM_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 67.83816525789305 0.009787749748478139 2 {[QG]|[NA]}{M(Oxidation (M))|F}K{[QN]|[E{I|L}]|[KN]}TTM 9 0 + 83.355 0 0 7.9121 7.9121 95.538 0 0 0 14.18218945128244 14.18218945128244 14.18218945128244 28.900676947446 0 2.3494850021680094 2 0.7134679910804405 0.6861818737241735 + + {[QG]|[NA]}{M(Oxidation (M))|F}K{[QN]|[E{I|L}]|[KN]}TTM;{[QG]|[NA]}{M(Oxidation (M))|F}[VG][{I|L}T]TTM;{[QG]|[NA]}{M(Oxidation (M))|F}R{[WT]|[RM]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[{M(Oxidation (M))|F}C]|[YS]}T{[QN]|[E{I|L}]|[KN]}[{I|L}P]TM;{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}P]{[QN]|[E{I|L}]|[KN]}TTM;{[{M(Oxidation (M))|F}C]|[YS]}T{[QN]|[E{I|L}]|[KN]}K[WQ];{[{M(Oxidation (M))|F}C]|[YS]}T[{I|L}T]R[WQ];{[{M(Oxidation (M))|F}C]|[YS]}T{[QN]|[E{I|L}]|[KN]}[VP][{M(Oxidation (M))|F}V];{[{M(Oxidation (M))|F}C]|[YS]}T[{I|L}T][HS][{M(Oxidation (M))|F}V];{[{M(Oxidation (M))|F}C]|[YS]}[KG]{[SA]|[TG]}K[WQ] 7.9121;5.1688;4.147;3.9506;3.453;3.4375;2.7946;1.511;0.98799;0.98251 +;-;-;-;-;-;-;-;-;- + 255 NaN NaN 165693.8 NaN 7325 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10025 49.484 NaN 637360 35 0 80068 0.261 + 24791 RYPDRITLI 9 92 573.8350956172454 1145.6556383012908 2 573.8352661132812 MULTI HCD FTMS 0 0 0 10022 233111.40625 0.11042444123750798 -5 0.1411590576171875 3 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 53.832793166522166 0.026208976789938845 2 RY[DP]{I|L} 5 4 41.466 0 0 3.6194 0 0 0 498.30564294986567 498.30564294986567 18.630361489460086 0 0 0 0 0.9247425010840047 1.3010299956639813 0.3494850021680094 0 RY[DP]{I|L} 3.6194 - 223 + NaN NaN 191165.3 NaN 7326 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10026 49.488 NaN 200670 35 0 17135 0.261 + 18618 MWRLLGDCY 9 56 578.7667042283801 NaN 0 578.7854614257812 PEAK HCD FTMS 0 0 0 10022 12800.6953125 1 0 0 4 Unmodified _MWRLLGDCY_ ENST00000392825.7_1_2:155157929-155158067:+|nuORF 10.823927491677226 0.2427956001690155 2 ADYR 4 8 26.542 0 0 2.297 0 0 131.05721714651241 516.2178438775999 647.2750610241123 0 0 0 0 0 0 0 0 0.7614393726401688 ADYR 2.297 - 48 + NaN NaN 122539.6 NaN 7327 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10027 49.491 NaN 119090 35 0 11957 0.261 -1 SYMLVNENRF 10 47 644.8032623445293 1287.5919717558586 2 644.8031005859375 MULTI HCD FTMS 0 0 0 10022 34100.67578125 0.4049030911374752 -3 0.08533477783203125 5 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 32.89776655970281 0.20703914202719614 2 NENV{I|L}[EC]{M(Oxidation (M))|F} 8 -1 51.675 0 0 4.0133 0 0 321.17927748847814 0 321.17927748847814 0 44.685559738766045 0 0 0 1.2302046884880937 0 0 0.4247425010840047 NENV{I|L}[EC]{M(Oxidation (M))|F} 4.0133 - 305 NaN NaN 97293.9 NaN 7328 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10028 49.494 NaN 195290 35 0 19489 0.264 + 23551 RPAVLDPAL 9 57 476.2847831765647 950.5550134199294 2 476.7857666015625 MULTI HCD FTMS 0 0 0 10022 27560.205078125 0.4307037299692506 -2 0.0491180419921875 6 Unmodified _RPAVLDPAL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 16.149105407346934 0.22083165093524068 2 {I|L}DPA{I|L} 5 4 42.981 0 0 4.5216 0 0 423.2580738751969 0 423.2580738751969 0 27.49618491916923 0 0 0 0.9247425010840047 0 0 0 + {I|L}DPA{I|L} 4.5216 + + 45 NaN NaN 110442.2 NaN 7329 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10029 49.498 NaN 124400 35 0 19977 0.261 -1 GAMYGDPTL 9 62 470.7078193467763 939.4010857603527 2 470.7076110839844 MULTI HCD FTMS 0 0 0 10022 26077.60546875 0.6742901555817157 1 -0.0329132080078125 7 Oxidation (M) _GAM(Oxidation (M))YGDPTL_ ENSG00000213339|ENST00000250237|QTRT1;ENST00000587500.5_1_19:10823370-10823943:+|nuORF 26.88365393820708 0.12808753336095696 2 [{I|L}V]D 3 -1 25.062 0 0 2.6678 0 0 0 609.1982103543558 609.1982103543558 2.4421905028821556 0 0 0 0 0 2 0 0 [{I|L}V]D 2.6678 - 43 NaN NaN 109884.8 NaN 7330 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10030 49.501 NaN 139570 35 0 13101 0.261 + 2524 DSPSPAVTSL 10 63 487.2453279535205 972.476102973841 2 487.2458190917969 MULTI HCD FTMS 0 0 0 10022 43426.703125 1 0 0 8 Unmodified _DSPSPAVTSL_ REV__ENSG00000130287|ENST00000252575|NCAN;REV__NCAN|p.W1092Cfs*32|1|0.39|ENSG00000130287|chr19:19238277-19238277|G/-|frameshift_variant 41.8396318013385 0.12944265636084 2 VTS{I|L} 4 -1 48.928 0 0 5.0313 0 0 554.2333851544937 0 554.2333851544937 0 34.97547537623447 0 0 0 1.5 0 0.3494850021680094 0 VTS{I|L} 5.0313 + + 194 NaN NaN 101350.9 NaN 7331 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10031 49.504 NaN 268330 35 0 103000 0.261 + 32042 VYPYKLYRL 9 57 405.56947586404624 1213.6865981923388 3 405.5693054199219 MULTI HCD FTMS 0 0 0 10022 65921.75 0.900436100875926 -2 0.0491180419921875 9 Unmodified _VYPYKLYRL_ ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant 4.897010918128616 0.31389406404703984 2 VY 2 7 45.217 0 0 3.7256 0 0 0 948.5306976714207 948.5306976714207 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.7256 + + 22 + NaN NaN 138853.8 NaN 7332 2697 10022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10033 49.509 NaN 715650 35 0 70459 0.327 -1 0 75 554.2461272588474 1106.4777015844948 2 554.2462158203125 MULTI HCD FTMS 0 0 0 10032 311061.375 0.4497524319431833 3 -0.092071533203125 1 NaN NaN 2 DVHG{[ET]|[MV]}{M(Oxidation (M))|F} 7 -1 63.677 0 0 5.7549 0 0 0 318.1203707330688 318.1203707330688 36.944925830095556 0 0 0 0 1 1.6989700043360187 1.274227503252014 0 DVHG{[ET]|[MV]}{M(Oxidation (M))|F} 5.7549 - 676 + NaN NaN 195651.3 NaN 7333 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10034 49.514 NaN 236410 35 0 22683 0.261 + 15312 LPAPIEKTI 9 50 491.3027199340736 980.5908869349472 2 491.302734375 MULTI HCD FTMS 0 0 0 10032 120394.234375 0.6059823966015041 3 -0.092071533203125 2 Unmodified _LPAPIEKTI_ nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 67.83816525789305 0.009787749748478139 2 {I|L}PAP{[QN]|[E{I|L}]|[KN]}KT{I|L} 9 0 + 79.777 0 0 8.1356 8.1356 97.43 0 0 0 65.1727437142231 11.311508337315175 11.311508337315175 79.77683748398498 0 2.1861818737241734 1.6989700043360187 1.4604093769761874 0 + + {I|L}PAP{[QN]|[E{I|L}]|[KN]}KT{I|L} 8.1356 + + 84 + NaN NaN 120025.9 NaN 7334 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10035 49.517 NaN 312520 35 0 17055 0.261 -1 0 68 473.2186835671037 944.4228142010074 2 473.218505859375 MULTI HCD FTMS 0 0 0 10032 117637.0390625 0.4495905490068637 4 -0.11834716796875 3 NaN NaN 2 W{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.9016 0 0 593.2696902769825 0 593.2696902769825 0 4.7665803969753995 0 0 0 0 0 0 0 W{M(Oxidation (M))|F} 1.9016 - 178 + NaN NaN 130147.8 NaN 7335 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10036 49.52 NaN 117190 35 0 11187 0.261 -1 ADKMDMSL 8 47 484.70680835063496 967.3990637680699 2 484.7064208984375 MULTI HCD FTMS 0 0 0 10032 58957.4921875 0.7724797896750462 -5 0.13787460327148438 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 36.506200033944 0.2758116748432176 2 {M(Oxidation (M))|F}S{I|L} 3 -1 30.177 0 0 3.1194 0 0 602.2357655255875 0 602.2357655255875 0 13.455612550363796 0 0 0 0.5 0 0.3494850021680094 0 {M(Oxidation (M))|F}S{I|L} 3.1194 + + 17 NaN NaN 98725.9 NaN 7336 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10037 49.524 NaN 195910 35 0 19193 0.261 + 13924 KYQKGFSLW 9 60 578.8111865420695 1155.607820150939 2 578.8107299804688 MULTI HCD FTMS 0 0 0 10032 19996.5703125 0.05908571973625151 11 -0.3021736145019531 5 Unmodified _KYQKGFSLW_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 21.536976647645854 0.1742816388551942 2 ADYQQ[KS]W 8 6 26.26 0 0 2.2724 0 0 131.14681763719483 0 131.14681763719483 0 10.061668675368622 0 0 0 0.8807196863200843 0 0 0.3807196863200844 ADYQQ[KS]W 2.2724 - 154 + NaN NaN 118861.6 NaN 7337 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10038 49.527 NaN 82622 35 0 18898 0.261 + -1 MCLMEVHEL 9 45 589.2555829057159 1176.4966128782316 2 589.255615234375 MULTI HCD FTMS 0 0 0 10032 19966.21875 0.052825112819477424 39 -1.103424072265625 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))LMEVHEL_ REV__ENSG00000168263|ENST00000382082|KCNV2 1.844237919475145 0.33703635659052655 2 {I|L}{I|L} 2 -1 20.969 0 0 1.7823 0 0 932.3257923810562 0 932.3257923810562 0 17.47425010840047 0 0 0 0 0 0 0 {I|L}{I|L} 1.7823 - 2 NaN NaN 94880.7 NaN 7338 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10039 49.53 NaN 68140 35 0 6324.7 0.264 + 28292 TLSFLLLIRSF 11 51 437.2677746036971 1308.7814944112913 3 437.2676696777344 MULTI HCD FTMS 0 0 0 10032 7109.71875 0.26283696109024124 9 -0.249664306640625 7 Unmodified _TLSFLLLIRSF_ REV__ENSG00000198690|ENST00000362065|FAN1;REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF 0.40826533853263924 0.41713015341995335 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1831 0 0 1143.7026350136334 0 1143.7026350136334 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1831 + + 3 + NaN NaN 95648.2 NaN 7339 2698 10032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10041 49.535 NaN 4735600 35 0 1202700 0.327 + 24334 RYIDRIHIF 9 85 411.5679849081682 1231.6821253247047 3 411.5681457519531 MULTI HCD FTMS 0 0 0 10040 2419166.5 0.9348473804386312 1 -0.029552459716796875 1 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 64.9267550582149 0.010729834900650251 2 [YR]{I|L}DR{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 79.109 0 0 6.4228 6.4228 92.552 0 0 0 10.495587109089044 59.64464470375219 10.495587109089044 25.28782221775522 0 2.555462187404089 0 0.3252574989159953 1.3169015600442577 + + [YR]{I|L}DR{I|L}H{I|L}{M(Oxidation (M))|F};[YR]{I|L}D[H{I|L}]R{I|L}{M(Oxidation (M))|F};[H{I|L}][KP]{NN|[MP]|[D{I|L}]|[EV]}{I|L}H{I|L}{M(Oxidation (M))|F};[H{I|L}]{I|L}D[YR]R{I|L}{M(Oxidation (M))|F} 6.4228;4.3697;4.1007;3.3999 +;-;-;- + 604 NaN NaN 733580.1 NaN 7340 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10042 49.54 NaN 326590 35 0 23935 0.261 + 34276 YPDRIMNTF 9 70 586.7735938013249 1171.5326346694496 2 586.7741088867188 MULTI HCD FTMS 0 0 0 10040 204924.640625 0.060674452272764454 47 -1.3156890869140625 2 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 84.5221896805406 0.004669506596793478 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 74.135 0 0 6.328 6.328 85.756 0 0 0 19.621892823592972 39.186296826174996 19.621892823592972 3.0102999566398125 0 1.6237125054200234 1.3979400086720375 0.5 0.3054621874040891 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F} 6.328;6.0711;5.5811;5.58;5.542;5.3688;5.2851;4.7951;4.794;4.5828 +;-;-;-;-;-;-;-;-;- + 553 NaN NaN 130438.7 NaN 7341 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10043 49.543 NaN 994920 35 0 168830 0.261 + 28569 TPVDDRISL 9 79 508.27464044075765 1014.5347279483153 2 508.28790283203125 MULTI HCD FTMS 0 0 0 10040 25031.89453125 0.047702838442328636 10 -0.2759132385253906 3 Unmodified _TPVDDRISL_ ENSG00000064703|ENST00000369702|DDX20 13.614867670302875 0.2427269026982664 2 TPVD 4 5 16.771 0 0 1.6531 0 0 0 599.3136080377561 599.3136080377561 1.286531417686092 0 0 0 0 0.5 0 0 0 + TPVD 1.6531 + + 216 + NaN NaN 233423.5 NaN 7342 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10044 49.547 NaN 258000 35 0 28898 0.261 -1 EPNPDDPLM 9 54 522.2211908795825 1042.427828825965 2 522.2211303710938 MULTI HCD FTMS 0 0 0 10040 44119.74609375 0.20885097721574264 15 -0.4164276123046875 4 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ ENSG00000077152|ENST00000646651|UBE2T;ENST00000487227.5_1_1:202302298-202304891:-|nuORF 25.399314129420986 0.14091189997036632 2 D[{I|L}P]{M(Oxidation (M))|F} 4 -1 24.693 0 0 2.3688 0 0 552.2191018745963 0 552.2191018745963 0 16.73393743112328 0 0 0 1 0 0 0 D[{I|L}P]{M(Oxidation (M))|F} 2.3688 + + 24 + NaN NaN 122650.7 NaN 7343 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10045 49.55 NaN 140200 35 0 16186 0.261 + 15774 LPGGAGMYFDS 11 47 557.7476861092797 1113.4808192853593 2 557.7478637695312 MULTI HCD FTMS 0 0 0 10040 84757.890625 0.8811141092479781 8 -0.2234039306640625 5 Unmodified _LPGGAGMYFDS_ REV__ENSG00000180318|ENST00000316824|ALX1 5.731851221503515 0.39378271418728467 2 {I|L}PAAR 5 -1 52.206 0 0 4.6886 0 0 0 602.157256164853 602.157256164853 45.21652514092061 0 0 0 0 1.4247425010840047 0 0 0 {I|L}PAAR 4.6886 - 40 + NaN NaN 111820.9 NaN 7344 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10046 49.553 NaN 104690 35 0 9057.2 0.261 -1 VYNENLVHMI 10 54 624.3082502343294 1246.6019475354587 2 624.3087158203125 MULTI HCD FTMS 0 0 0 10040 28591.828125 0.07769621438599221 7 -0.19715499877929688 6 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 24.020572477871973 0.2864316864133941 2 V[NS]RNEN 7 -1 31.203 0 0 2.503 0 0 415.1888314039377 0 415.1888314039377 0 25.71796966806488 0 0 0 0.4247425010840047 0 0 0 V[NS]RNEN 2.503 - 33 NaN NaN 102429.4 NaN 7345 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10047 49.557 NaN 130280 35 0 8660.4 0.261 + 17069 LYKVLIERS 9 50 560.8401616322094 NaN 0 560.8521118164062 PEAK HCD FTMS 0 0 0 10040 17931.490234375 1 0 0 7 Unmodified _LYKVLIERS_ REV__ENSG00000185917|ENST00000332131|SETD4;REV__nc|ENSG00000185917|Q9NVD3-3|SETD4 4.75600775471527 0.27219989241163056 2 {I|L}E 2 -1 8.9845 0 0 0.80243 0 0 276.12223138256144 598.3911226861936 874.513354068755 0 0 0 0 0 0 0 0.7302046884880937 0 {I|L}E 0.80243 + + 11 + NaN NaN 126780.7 NaN 7346 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10048 49.56 NaN 83349 35 0 4492.9 0.261 + 21095 PNGDDDAWHL 10 42 570.241422786628 1138.468292640056 2 570.2415771484375 MULTI HCD FTMS 0 0 0 10040 8225.494140625 0.10055856410844162 4 -0.12837982177734375 8 Unmodified _PNGDDDAWHL_ REV__ENSG00000178921|ENST00000314666|PFAS;REV__ENST00000546020.2_3_17:8172159-8172579:+|nuORF 1.844237919475145 0.46554186016084764 2 W[H{I|L}] 3 -1 8.072 0 0 0.70902 0 0 684.2353957668123 0 684.2353957668123 0 5.307758788719534 0 0 0 0 0 0 0 W[H{I|L}] 0.70902 + + 8 + NaN NaN 92842.9 NaN 7347 2699 10040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10050 49.565 NaN 2024400 35 0 186140 0.327 + 2680 DVHGPDWHL 9 90 538.2513336976818 1074.4881144621636 2 538.2515869140625 MULTI HCD FTMS 0 0 0 10049 980900 0.2240472168831421 5 -0.14138031005859375 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 128.3654064809346 0.00070410514679239 2 DVHGPDWH{I|L} 9 0 + 97.519 0 0 9.0759 9.0759 96.255 0 0 0 61.14393726401687 11.39506772603255 11.39506772603255 19.247425010840047 0 2.6861818737241734 2 1.0356668758921828 0 + + DVHGPDWH{I|L};DVHGPD{I|L}[WH];[HV]DGPDWH{I|L};{[HG]|PP}[DV]PDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}P{I|L}DPG[W{M(Oxidation (M))|F}];[HV]DGP[WH]D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}G[{M(Oxidation (M))|F}V]S;{[HG]|PP}[DP]W[DV]H{I|L};{[HG]|PP}[DP]WHVD{I|L} 9.0759;7.2846;7.2116;4.7632;4.5318;4.0771;3.6278;2.2977;2.1968;2.0532 +;-;-;-;-;-;-;-;-;- + 2490 + NaN NaN 396604.3 NaN 7348 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10051 49.569 NaN 1112200 35 0 188730 0.261 -1 MPETTETVL 9 66 518.7470885363149 1035.4796241394297 2 518.7471923828125 MULTI HCD FTMS 0 0 0 10049 556602.0625 0.6457247972238345 7 -0.19385147094726562 2 Oxidation (M) _M(Oxidation (M))PETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 25.399314129420986 0.14091189997036632 2 ETV{I|L} 4 -1 46.117 0 0 4.4537 0 0 575.22953993965 0 575.22953993965 0 39.127755121474436 0 0 0 1.089136830878453 0 0.8494850021680094 0 ETV{I|L} 4.4537 + + 37 NaN NaN 251215.4 NaN 7349 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10052 49.573 NaN 437520 35 0 56563 0.261 + 25443 SESLFVSNHAY 11 62 627.2936319800564 1252.5727110269127 2 627.2935180664062 MULTI HCD FTMS 0 0 0 10049 258161.375 0.7451812912244354 2 -0.06253433227539062 3 Unmodified _SESLFVSNHAY_ ENSG00000149925|ENST00000642816|ALDOA;nc|ENSG00000149925|P04075|ALDOA 150.61878029816774 9.004548430239351E-05 2 {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY 11 0 + 97.903 0 0 7.8162 7.8162 93.354 0 0 0 5.119229975844689 5.119229975844689 5.119229975844689 12.658467447160973 0 3.829689690656103 0 2.443672679568534 0 + + {[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSNHAY;{[MG]|[TS]}D{I|L}{M(Oxidation (M))|F}VSNHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}VSGGHAY;{[ES]|[DT]|[{I|L}C]}S{I|L}{M(Oxidation (M))|F}[SG][VG]HAY;{[ES]|[DT]|[{I|L}C]}S{I|L}[YQ][VG]HAY;{[ES]|[DT]|[{I|L}C]}S[HV][VS]{M(Oxidation (M))|F}QAY 7.8162;6.8056;6.419;4.2245;3.6524;2.8326 +;-;-;-;-;- + 611 NaN NaN 155503.5 NaN 7350 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10053 49.576 NaN 275750 35 0 33353 0.262 + 4189 ETTVYVIVR 9 62 540.3082066507787 1078.6018603683574 2 540.3084106445312 MULTI HCD FTMS 0 0 0 10049 94678.671875 0.3842754900825483 3 -0.09882736206054688 4 Unmodified _ETTVYVIVR_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 32.78568957990786 0.09846250359632436 2 {[ET]|[MV]}TVYV{I|L}VR 9 0 + 55.143 0 0 5.1125 5.1125 91.212 0 0 0 34.710084362531575 14.973024840566467 14.973024840566467 37.23320034371433 0 0.6549471895720985 0 0 0 + + {[ET]|[MV]}TVYV{I|L}VR;{[ET]|[MV]}T{I|L}{I|L}[{M(Oxidation (M))|F}T]VR 5.1125;1.6605 +;- + 143 + NaN NaN 126460.9 NaN 7351 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10054 49.58 NaN 328760 35 0 106230 0.261 + 9720 HWLFFIVGFKA 11 43 455.5893243655545 1363.7461436968636 3 455.5890197753906 MULTI HCD FTMS 0 0 0 10049 101346.09375 0.8277974753399016 -2 0.055812835693359375 5 Unmodified _HWLFFIVGFKA_ REV__ENSG00000256394|ENST00000537611|ASIC5 1.3296431237094175 0.4130893034510334 2 {I|L}EA 3 -1 26.198 0 0 1.921 0 0 1032.568951335707 0 1032.568951335707 0 20.713337517843655 0 0 0 0 0 0 0 {I|L}EA 1.921 - 11 NaN NaN 132689 NaN 7352 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10055 49.583 NaN 133460 35 0 16474 0.261 + 8277 GVAYRLPVG 9 42 466.27169149027543 930.5288300473509 2 466.2715759277344 MULTI HCD FTMS 0 0 0 10049 59353.734375 0.36533514245433335 4 -0.11842727661132812 6 Unmodified _GVAYRLPVG_ ENSG00000143942|ENST00000295304|CHAC2 7.910154910731844 0.2910521888787154 2 [VG]A 3 6 32.447 0 0 3.487 0 0 0 700.378667883461 700.378667883461 32.447274948966935 0 0 0 0 0.5 1.6989700043360187 0 0 + [VG]A 3.487 + + 2 + NaN NaN 102339.1 NaN 7353 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10056 49.586 NaN 308970 35 0 27292 0.261 + 12973 KYIHFTPNF 9 63 583.8038681842113 1165.5931834352225 2 583.803466796875 MULTI HCD FTMS 0 0 0 10049 109323.3125 0.6102006634272948 -3 0.08872604370117188 7 Unmodified _KYIHFTPNF_ ENSG00000137975|ENST00000370565|CLCA2 103.82355648334675 0.003950725192926219 2 KY{I|L}H{M(Oxidation (M))|F}TPN{M(Oxidation (M))|F} 9 0 + 92.375 0 0 7.9252 7.9252 95.054 0 0 0 70.16888453597232 17.632192780232785 17.632192780232785 22.54554718523508 0 2.579689690656103 0 1.0994850021680094 0.6989700043360187 + + KY{I|L}H{M(Oxidation (M))|F}TPN{M(Oxidation (M))|F};[YK]{I|L}H{M(Oxidation (M))|F}TPN{M(Oxidation (M))|F};KY{I|L}R[DN]PN{M(Oxidation (M))|F};KY{I|L}H{M(Oxidation (M))|F}[KS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};KY{I|L}H{M(Oxidation (M))|F}VVN{M(Oxidation (M))|F};KY{I|L}H[HK]P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};KY{I|L}RYYN{M(Oxidation (M))|F};KYW[NP]VVN{M(Oxidation (M))|F};[YK]{I|L}H{[ET]|[MV]}[QT]{M(Oxidation (M))|F};[YK]{I|L}H[KC]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 7.9252;5.9909;4.8359;4.7298;3.8061;3.7843;2.9724;2.6456;2.4299;2.2396 +;+;-;-;-;-;-;-;-;- + 457 + NaN NaN 139988.9 NaN 7354 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10057 49.59 NaN 77225 35 0 8815.4 0.262 -1 ADKMDMSL 8 37 484.70680835063496 967.3990637680699 2 484.70672607421875 MULTI HCD FTMS 0 0 0 10049 61827.2734375 0.8100805751589885 -3 0.08872604370117188 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 32.78568957990786 0.32360605643721263 2 H{M(Oxidation (M))|F}S{I|L} 4 -1 37.691 0 0 3.8961 0 0 465.17405898261876 0 465.17405898261876 0 27.95880017344075 0 0 0 0.5 0 0.4247425010840047 0 H{M(Oxidation (M))|F}S{I|L} 3.8961 - 20 NaN NaN 91208.2 NaN 7355 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10058 49.593 NaN 111140 35 0 18575 0.261 + 5367 FGHAEVVSL 9 46 479.75350199363135 957.4924510540627 2 479.7530822753906 MULTI HCD FTMS 0 0 0 10049 66299.75 0.34965237342935185 5 -0.14138031005859375 9 Unmodified _FGHAEVVSL_ ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS 13.90604991867851 0.24021115267848145 2 VVS{I|L} 4 5 40.433 0 0 4.2228 0 0 541.2296009748062 0 541.2296009748062 0 19.463950151760656 0 0 0 1 0 0 0 + VVS{I|L} 4.2228 + + 26 NaN NaN 95955.1 NaN 7356 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10059 49.596 NaN 200670 35 0 55345 0.261 + 30209 VIDEPVRL 8 51 470.7769491584825 939.5393453837651 2 470.7763977050781 MULTI HCD FTMS 0 0 0 10049 97488.7578125 0.9158096962845397 -2 0.055812835693359375 10 Unmodified _VIDEPVRL_ chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 20.453626601364224 0.4433031943603284 2 [{I|L}V]DEK 5 4 47.971 0 0 5.1058 0 0 0 352.1870211236938 352.1870211236938 43.99166239860314 0 0 0 0 0.9247425010840047 2 0 0 [{I|L}V]DEK 5.1058 - 48 + NaN NaN 111566.2 NaN 7357 2700 10049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10061 49.601 NaN 281100 35 0 53315 0.327 + 20542 PEALHCYQEL 10 65 601.7791368793294 1201.5437208254586 2 601.779296875 MULTI HCD FTMS 0 0 0 10060 166874.921875 0.7451407451522571 11 -0.29463958740234375 1 Unmodified _PEALHCYQEL_ ENSG00000177888|ENST00000367405|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant 22.736283301280096 0.29844449404982915 2 EMANVE{I|L} 7 7 67.977 0 0 5.6575 0 0 397.16868788886876 0 397.16868788886876 0 63.028419686577806 0 0 0 0.8494850021680094 0 0.4247425010840047 1.1747425010840047 EMANVE{I|L} 5.6575 - 316 NaN NaN 121932.4 NaN 7358 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10062 49.606 NaN 556960 35 0 102270 0.261 + 16240 LPYGREDVL 9 66 531.2848713133718 1060.5551896935435 2 531.2845458984375 MULTI HCD FTMS 0 0 0 10060 248859.59375 0.7064766915681702 -1 0.036258697509765625 2 Unmodified _LPYGREDVL_ CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;ENSG00000163131|ENST00000368985|CTSS;nc|ENSG00000163131|P25774-2|CTSS 57.72198328787511 0.020768266150574023 2 {I|L}PYT{I|L} 5 5 70.988 0 0 6.6934 0 0 0 470.21567712955317 470.21567712955317 56.01342204748164 0 0 0 0 0.9247425010840047 1.6989700043360187 1.1307196863200843 0 {I|L}PYT{I|L} 6.6934 - 416 + NaN NaN 174879.5 NaN 7359 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10063 49.609 NaN 111600 35 0 12286 0.261 + 24338 RYIDRIHIF 9 43 616.8488084441427 1231.6830639550853 2 616.8482666015625 MULTI HCD FTMS 0 0 0 10060 64271.51953125 0.5959565384258193 3 -0.0821685791015625 3 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 17.04857598603903 0.2130604247057437 2 D[PG]{I|L}{M(Oxidation (M))|F} 5 6 24.208 0 0 1.9655 0 0 684.406705072979 0 684.406705072979 0 9.515449934959719 0 0 0 0.5 0 0 0 D[PG]{I|L}{M(Oxidation (M))|F} 1.9655 - 16 NaN NaN 102176 NaN 7360 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10064 49.613 NaN 164480 35 0 10082 0.262 + 16952 LYHLVEIH 8 40 512.2850483452966 NaN 0 512.2852172851562 PEAK HCD FTMS 0 0 0 10060 25915.6171875 0.5866991415905561 1 -0.026275634765625 4 Unmodified _LYHLVEIH_ REV__ENSG00000097096|ENST00000341460|SYDE2;REV__ENSG00000105137|ENST00000342784|SYDE1;REV__nc|ENSG00000105137|Q6ZW31-2|SYDE1 49.66892048692302 0.2337545662604692 2 YV[H{I|L}]E 5 -1 25.546 0 0 2.4983 0 0 113.08438297165851 265.13047205142817 378.21485502308667 0 0 0 0 0 1.274227503252014 0 0.9247425010840047 0 YV[H{I|L}]E 2.4983 - 13 + NaN NaN 110127.9 NaN 7361 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10065 49.616 NaN 136160 35 0 30345 0.261 + 26347 SSGTVFQLLRA 11 42 589.8299364007722 1177.6453198683444 2 589.8311157226562 MULTI HCD FTMS 0 0 0 10060 29699.375 0.660192822526984 -1 0.036258697509765625 5 Unmodified _SSGTVFQLLRA_ REV__ENSG00000108854|ENST00000262435|SMURF2;REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF 1.0714618166137932 0.41422159895841093 2 {I|L} 1 -1 5.4846 0 0 0.46572 0 0 132.24518465558555 929.2887667291624 1061.533951384748 0 0 0 0 0 0 0 0 0 {I|L} 0.46572 + + 1 + NaN NaN 102273.7 NaN 7362 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10066 49.619 NaN 158060 35 0 11921 0.261 -1 KYLDIPKML 9 57 568.8230902357556 1135.631627538311 2 568.8230590820312 MULTI HCD FTMS 0 0 0 10060 51101.0390625 0.39762459877710793 -7 0.21031951904296875 6 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ ENSG00000072110|ENST00000394419|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814|ACTN1 18.373094154950223 0.20161688160436167 2 KY{NN|[MP]|[D{I|L}]|[EV]}{I|L}[KP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 + 32.61 0 0 2.8715 2.8715 88.514 0 0 0 31.896512253176827 5.737862141609192 5.737862141609192 32.609849771020485 0 1.4247425010840047 0 0 0 KY{NN|[MP]|[D{I|L}]|[EV]}{I|L}[KP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.8715 + + 36 + NaN NaN 103369 NaN 7363 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10067 49.623 NaN 73072 35 0 7227.7 0.261 -1 YWMHVQNTF 9 44 621.2741052049596 1240.533657476719 2 621.2749633789062 MULTI HCD FTMS 0 0 0 10060 8403.7802734375 0.02313263633600042 -35 0.9736213684082031 7 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 3.944395688203298 0.32111559684428237 2 Q{[QS]|[NT]}{M(Oxidation (M))|F} 4 -1 16.198 0 0 1.3057 0 0 732.3100453107437 0 732.3100453107437 0 16.197887582883936 0 0 0 0 0 0 0 Q{[QS]|[NT]}{M(Oxidation (M))|F} 1.3057 + + 3 NaN NaN 108393.9 NaN 7364 2701 10060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10069 49.627 NaN 3229700 35 0 432060 0.327 + 24792 RYPDRITLI 9 113 573.8350956172454 1145.6556383012908 2 573.835205078125 MULTI HCD FTMS 0 0 0 10068 2111049 1 0 0 1 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 110.6747026088012 0.0028322563155251486 2 RYPD{I|L}[R{I|L}][{I|L}T] 9 2 + 66.279 0 0 5.7853 5.7853 91.824 0 0 0 33.95403580464789 8.132287009000414 8.132287009000414 28.797318400649566 0 0.9247425010840047 1.3979400086720375 1.669917722885169 0.7302046884880937 RYPD{I|L}[R{I|L}][{I|L}T];{I|L}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[QT]{[{M(Oxidation (M))|F}H]|[RQ]};{I|L}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KDR{[QN]|[E{I|L}]|[KN]};RY{I|L}[DP][R{I|L}][{I|L}T];RY{I|L}{[ET]|[MV]}R{I|L}[VP];RY{[ET]|[MV]}{I|L}R{I|L}[VP];[{I|L}T]{I|L}R{I|L}DPYR;{I|L}RY[DP][R{I|L}][{I|L}T];[VG]Y{I|L}{I|L}{I|L}AR{[QN]|[E{I|L}]|[KN]};R{I|L}Y[DP][R{I|L}][{I|L}T] 5.7853;3.2717;3.2483;3.0753;2.4413;2.0803;1.2668;0.77898;0.61658;0.4121 -;-;-;-;-;-;-;-;-;- 1907 + NaN NaN 576553.3 NaN 7365 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10070 49.632 NaN 863360 35 0 149550 0.261 + 15257 LPAAGVGDMVM 11 86 546.7569669014916 1091.4993808697832 2 546.7570190429688 MULTI HCD FTMS 0 0 0 10068 466850.78125 0.7234797033559964 11 -0.2913398742675781 2 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 164.5152109175784 1.8457817257505332E-08 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 112.73 0 0 10.328 10.328 95.687 0 0 0 15.821972934783986 88.57055768122291 15.821972934783986 11.575773191777941 0 3.774227503252014 1.3010299956639813 0.805462187404089 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAGV[EC]SV{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQV[EC]SV{M(Oxidation (M))|F};[{I|L}P]AN{I|L}[EC]SV{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}[EC]SV{M(Oxidation (M))|F};[YT]S{I|L}{I|L}[WY]{M(Oxidation (M))|F} 10.328;9.2672;8.542;8.3796;7.54;7.4815;6.5939;5.7543;2.1025 +;-;-;-;-;-;-;-;- + 990 NaN NaN 219491.2 NaN 7366 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10071 49.636 NaN 389750 35 0 51209 0.261 + 18939 NAFKEITTM 9 55 527.7666792903734 1053.5188056475467 2 527.765625 MULTI HCD FTMS 0 0 0 10068 254129.40625 0.658373319859529 3 -0.07884597778320312 3 Unmodified _NAFKEITTM_ ENSG00000137947|ENST00000370500|GTF2B;ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF 103.41943736471063 0.004016698775839292 2 {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TTM 9 0 + 78.316 0 0 7.4337 7.4337 93.252 0 0 0 66.68727389736722 13.46787486224656 13.46787486224656 15.105742396127923 0 2.6549471895720984 1.5228787452803376 0.3807196863200844 0.28872548999643577 + + {[QG]|[NA]}{M(Oxidation (M))|F}KE{I|L}TTM;{[QG]|[NA]}{M(Oxidation (M))|F}[VG]T{I|L}TTM;{[DS]|[MA]|[CV]|TT}M[KQ]{I|L}TTM;{[QG]|[NA]}{M(Oxidation (M))|F}RP[YR]M;{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}EK[WQ];{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}[KQ][PS]M;{[QG]|[NA]}[WP]PR[WQ];{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}TR[WQ];{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}[KQ][WE];{[DS]|[MA]|[CV]|TT}M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}P]TM 7.4337;5.9999;5.163;4.7951;3.3407;3.3398;3.237;3.0549;2.9349;2.7356 +;-;-;-;-;-;-;-;-;- + 400 + NaN NaN 138731.9 NaN 7367 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10072 49.639 NaN 995670 35 0 50017 0.261 + 24675 RYLSPKYIKMF 11 101 482.60400107569274 1444.7901738272783 3 482.6037902832031 MULTI HCD FTMS 0 0 0 10068 344315.34375 0.7071831058958482 -2 0.06253433227539062 4 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 100.0664306616029 0.019319382188409086 2 [Y{I|L}]RSPKY{I|L}KM{M(Oxidation (M))|F} 11 2 + 116.16 0 0 8.0396 8.0396 92.895 0 0 0 9.330532103693884 10 9.330532103693884 9.330532103693884 0 3.110924374808178 1.3010299956639813 2.9604093769761874 0.3494850021680094 [Y{I|L}]RSPKY{I|L}KM{M(Oxidation (M))|F};[YR]{I|L}SPKY{I|L}KM{M(Oxidation (M))|F};[Y{I|L}]RS[Q{I|L}]{M(Oxidation (M))|F}{I|L}KM{M(Oxidation (M))|F};[YR]{I|L}S[Q{I|L}]{M(Oxidation (M))|F}{I|L}KM{M(Oxidation (M))|F};[Y{I|L}]K[PS]RY{I|L}KM{M(Oxidation (M))|F};[KP]S[Y{I|L}]RY{I|L}KM{M(Oxidation (M))|F};[YR][TP]VKY{I|L}KM{M(Oxidation (M))|F};[K{I|L}]Y[PS]RY{I|L}KM{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VKY{I|L}KM{M(Oxidation (M))|F};[Y{I|L}]R{[VA]|[{I|L}G]}{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}KM{M(Oxidation (M))|F} 8.0396;7.3938;6.5173;5.8714;5.7672;5.2433;4.9925;4.9679;4.906;4.7893 -;+;-;-;-;-;-;-;-;- + 2700 NaN NaN 233133.6 NaN 7368 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10073 49.642 NaN 314480 35 0 18887 0.261 + 9176 HPKSTEYTF 9 67 555.2691754178213 NaN 0 555.2582397460938 PEAK HCD FTMS 0 0 0 10068 5618.8701171875 0.8432792508435397 1 -0.03629302978515625 5 Unmodified _HPKSTEYTF_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense;L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense;nc|ENSG999|O00370|L1_ORF2 11.640296217721598 0.23883959125015683 2 ST[WR]{M(Oxidation (M))|F}T 6 7 16.119 0 0 1.4541 0 0 165.10473337591947 162.05600916080314 327.16074253672264 0 0 0 0 0 0 0 1 0 ST[WR]{M(Oxidation (M))|F}T 1.4541 - 186 + NaN NaN 125554.7 NaN 7369 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10074 49.645 NaN 243860 35 0 45286 0.262 + 28636 TRLGAQWA 8 54 451.74566475877526 901.4767765843505 2 451.74578857421875 MULTI HCD FTMS 0 0 0 10068 78174.8359375 0.8508733791735412 -1 0.026275634765625 6 Unmodified _TRLGAQWA_ REV__ENSG00000162105|ENST00000601538|SHANK2;REV__ENST00000445654.2_1_11:70417416-70506001:-|nuORF;REV__ENST00000470759.5_1_11:70500478-70653149:-|nuORF;REV__nc|ENSG00000162105|Q9UPX8-1|SHANK2;REV__nc|ENSG00000162105|Q9UPX8-2|SHANK2;REV__nc|ENSG00000162105|Q9UPX8-4|SHANK2 7.910154910731844 0.5302565402355366 2 T{I|L}RR 4 -1 35.477 0 0 3.9355 0 0 0 372.13108240299067 372.13108240299067 18.003122090841828 0 0 0 0 0.3807196863200844 0 0 0.4247425010840047 T{I|L}RR 3.9355 - 33 + NaN NaN 129760.1 NaN 7370 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10075 49.649 NaN 129440 35 0 12518 0.261 -1 SYMLVNENRF 10 44 644.8032623445293 1287.5919717558586 2 644.8033447265625 MULTI HCD FTMS 0 0 0 10068 59808.6640625 0.7101534617980929 2 -0.0558929443359375 7 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 37.07464296494664 0.1707926854601146 2 VSV{I|L}{M(Oxidation (M))|F}[MT] 7 -1 41.827 0 0 3.2485 0 0 492.2057057111344 0 492.2057057111344 0 41.82721341614666 0 0 0 1.4247425010840047 0 0 0 VSV{I|L}{M(Oxidation (M))|F}[MT] 3.2485 - 50 NaN NaN 105470.5 NaN 7371 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10076 49.652 NaN 140060 35 0 10587 0.261 -1 VYLWRMCL 8 58 578.7855069440811 1155.5564609549622 2 578.7849731445312 MULTI HCD FTMS 0 0 0 10068 23698.111328125 0.24134773488524486 3 -0.07884597778320312 8 Carbamidomethyl (C),Oxidation (M) _VYLWRM(Oxidation (M))C(Carbamidomethyl (C))L_ ENST00000493340.5_1_7:139477017-139487169:+|nuORF 10.183394434864962 0.5188676124868831 2 A{I|L} 2 -1 19.464 0 0 1.6844 0 0 953.4185047834 0 953.4185047834 0 3.521825181113627 0 0 0 0 0 0 0 A{I|L} 1.6844 - 62 NaN NaN 106906.2 NaN 7372 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10077 49.655 NaN 620980 35 0 254900 0.264 + 7192 FSLHPGQPAYF 11 49 421.8767607381047 1262.608452814514 3 421.877197265625 MULTI HCD FTMS 0 0 0 10068 77568.4765625 0.0683788618270504 -7 0.20037841796875 9 Unmodified _FSLHPGQPAYF_ REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF 9.243775137331637 0.3765410959215665 2 RY{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.8669 0 0 778.3649769513687 0 778.3649769513687 0 33.09894379144197 0 0 0 1 0 0 0 RY{M(Oxidation (M))|F} 2.8669 - 11 NaN NaN 181172.5 NaN 7373 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10078 49.659 NaN 118990 35 0 12984 0.261 + 3967 EQPETYYKW 9 50 622.2854887822745 1242.5564246313488 2 622.285888671875 MULTI HCD FTMS 0 0 0 10068 30012.76953125 0.6134465033176689 -1 0.026275634765625 10 Unmodified _EQPETYYKW_ ENSG00000164880|ENST00000404767|INTS1 21.536976647645854 0.1742816388551942 2 YYKW 4 5 30.974 0 0 2.4928 0 0 584.2404505806145 0 584.2404505806145 0 24.011459692238688 0 0 0 0.3807196863200844 0 0 0 + YYKW 2.4928 + + 40 + NaN NaN 105777.9 NaN 7374 2702 10068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10080 49.664 NaN 126630 35 0 15055 0.327 + 23552 RPAVLDPAL 9 41 476.2847831765647 950.5550134199294 2 476.28460693359375 MULTI HCD FTMS 0 0 0 10079 57179.46875 0.5183238705875113 3 -0.06877517700195312 1 Unmodified _RPAVLDPAL_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 16.149105407346934 0.22083165093524068 2 {I|L}DPA{I|L} 5 4 45.573 0 0 4.7944 0 0 423.2597828595719 0 423.2597828595719 0 38.58349385648225 0 0 0 1 0 0 0 + {I|L}DPA{I|L} 4.7944 + + 23 NaN NaN 103493.3 NaN 7375 2703 10079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10081 49.668 NaN 366270 35 0 54095 0.261 + 568 APEEHPVLL 9 75 502.77415335255756 1003.5337537719151 2 502.77294921875 MULTI HCD FTMS 0 0 0 10079 54912.30078125 0.0005879809268440819 129 -3.369281768798828 2 Unmodified _APEEHPVLL_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF 20.453626601364224 0.18364154288633264 2 {I|L}{I|L} 2 7 25.217 0 0 2.5128 0 0 759.3552800767445 0 759.3552800767445 0 -4.195925227640984 -4.195925227640984 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.5128 + + 34 NaN NaN 144051.6 NaN 7376 2703 10079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10082 49.672 NaN 224670 35 0 20327 0.261 + 24406 RYKGPGFEYF 10 61 632.3115346331087 1262.6085163330174 2 632.3116455078125 MULTI HCD FTMS 0 0 0 10079 116681.3046875 0.20315562764982817 -6 0.18755340576171875 3 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 28.181266145913348 0.2479683941310927 2 [YR]KG[PG]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 10 0 + 53.148 0 0 4.2094 4.2094 82.832 0 0 0 5.764837301042718 43.31546893236258 5.764837301042718 3.789850105233299 0 1.774227503252014 0 0 0 + + [YR]KG[PG]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]KG[PG][YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KYE[NP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]K[NP][YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KG[PG]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]E;[YR]K[NP]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]E;[YR]KG[HN][WR]{M(Oxidation (M))|F};[YR]KY[W{M(Oxidation (M))|F}][TA]E;[YR]KYE{[CT]|[{M(Oxidation (M))|F}G]}[PG]{M(Oxidation (M))|F} 4.2094;3.9092;2.7637;2.603;2.4635;2.1889;1.8887;1.7342;1.2159;1.1615 +;-;-;-;-;-;-;-;-;- + 290 NaN NaN 120312.9 NaN 7377 2703 10079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10083 49.675 NaN 163890 35 0 12084 0.261 + 21604 PYNQQHLYF 9 57 605.2883166955793 1208.5620804579585 2 605.2899169921875 MULTI HCD FTMS 0 0 0 10079 91113.2578125 1 0 0 4 Unmodified _PYNQQHLYF_ ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF 43.77239144664712 0.04802738721622131 2 PY 2 7 39.706 0 0 3.2854 0 0 0 945.4235323541624 945.4235323541624 0.3715066370152371 0 0 0 0 0.3252574989159953 2 0 0 + PY 3.2854 + + 74 + NaN NaN 112009.6 NaN 7378 2703 10079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10084 49.678 NaN 66731 35 0 5488.2 0.263 -1 0 42 473.2186835671037 944.4228142010074 2 473.2184753417969 MULTI HCD FTMS 0 0 0 10079 18577.24609375 0.07099935816887755 9 -0.2320709228515625 5 NaN NaN 2 H 1 -1 6.9897 0 0 0.7401 0 0 213.0885591193176 591.2534884088499 804.3420475281675 0 0 0 0 0 0 0 0 0 H 0.7401 - 61 + NaN NaN 106560.5 NaN 7379 2703 10079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10086 49.683 NaN 1720500 35 0 434580 0.327 + 24335 RYIDRIHIF 9 77 411.5679849081682 1231.6821253247047 3 411.5680847167969 MULTI HCD FTMS 0 0 0 10085 670193.1875 0.2589852107005414 6 -0.15423583984375 1 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 18.721224879955976 0.19860910938195908 2 R[H{I|L}]{I|L}{M(Oxidation (M))|F} 5 4 37.461 0 0 3.0414 0 0 547.2748914339525 0 547.2748914339525 0 17.996812376923046 0 0 0 1.5 0 0 0.3252574989159953 + R[H{I|L}]{I|L}{M(Oxidation (M))|F} 3.0414 + + 75 NaN NaN 352714.6 NaN 7380 2704 10085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10087 49.688 NaN 1426100 35 0 218440 0.261 + 25643 SHALIKSLF 9 90 508.29987819717377 1014.5852034611476 2 508.2877197265625 MULTI HCD FTMS 0 0 0 10085 43103.07421875 0.3625859813547832 -6 0.1742401123046875 2 Unmodified _SHALIKSLF_ ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 20.41453444215458 0.18397929046831515 2 VDG{M(Oxidation (M))|F} 4 8 37.295 0 0 3.6759 0 0 578.3906224896767 0 578.3906224896767 0 6.487803220352362 0 0 0 0 0 0.9247425010840047 0 VDG{M(Oxidation (M))|F} 3.6759 - 368 + NaN NaN 303989.1 NaN 7381 2704 10085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10088 49.691 NaN 315550 35 0 16880 0.261 + 34277 YPDRIMNTF 9 83 586.7735938013249 1171.5326346694496 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10085 218450.234375 0.06467913413992425 52 -1.4102592468261719 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 84.5221896805406 0.004669506596793478 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 70.478 0 0 6.0159 6.0159 86.449 0 0 0 16.100067642479345 44.949244806726284 16.100067642479345 6.064921830680703 0 1.6549471895720984 1.0457574905606752 0.5 0.28872548999643577 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNTY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G[VS][C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F} 6.0159;5.4982;5.3958;5.2412;5.2299;4.7122;4.6255;4.6098;4.4552;4.2473 +;-;-;-;-;-;-;-;-;- + 1135 NaN NaN 134061.1 NaN 7382 2704 10085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10089 49.695 NaN 355160 35 0 36775 0.263 + 15571 LPDRDLAL 8 63 456.76105840284265 NaN 0 456.7608947753906 PEAK HCD FTMS 0 0 0 10085 189892.390625 0.45002695767127193 -5 0.147979736328125 4 Unmodified _LPDRDLAL_ ENSG00000077463|ENST00000337491|SIRT6;ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF 45.69961567697781 0.2674942174449587 2 A[RD]{I|L}D 5 5 19.274 0 0 2.1146 0 0 131.09455615990436 207.11284815006096 338.20740430996534 0 0 0 0 0 1.7302046884880937 0 0 0 A[RD]{I|L}D 2.1146 - 99 + NaN NaN 144503.3 NaN 7383 2704 10085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10090 49.698 NaN 268010 35 0 21719 0.261 + 4805 EYVEKFYRI 9 71 416.2203976508939 1245.6393635528818 3 416.2204284667969 MULTI HCD FTMS 0 0 0 10085 35688.328125 0.014061938520562756 34 -0.955413818359375 5 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 8.444304893310646 0.2870029342618836 2 [YE]VEK{M(Oxidation (M))|F}Y{I|L}R 9 2 + 34.86 0 0 2.7986 2.7986 81.348 0 0 0 18.406294381717963 9.120040098005163 9.120040098005163 3.010299956639816 0 0 0 0 0 [YE]VEK{M(Oxidation (M))|F}Y{I|L}R;D[Y{I|L}]EK{M(Oxidation (M))|F}Y{I|L}R 2.7986;2.5569 -;- 80 + NaN NaN 127429.5 NaN 7384 2704 10085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10091 49.701 NaN 161920 35 0 15739 0.261 -1 HYMPPPYASL 10 54 596.2790714993461 1190.543590065492 2 596.2771606445312 MULTI HCD FTMS 0 0 0 10085 37769.76171875 0.7782605287084544 3 -0.0754241943359375 6 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant 20.453626601364224 0.3197956946484955 2 {[WN]|[YH]}{M(Oxidation (M))|F}[RP]Q[SG]S{I|L} 10 -1 + 38.473 0 0 3.2315 3.2315 60.247 0 0 0 7.269987279362624 38.47295930833134 7.269987279362624 0 0 0.8807196863200843 0 0 0 {[WN]|[YH]}{M(Oxidation (M))|F}[RP]Q[SG]S{I|L};{[WN]|[YH]}{M(Oxidation (M))|F}[RP][NS]AS{I|L};{[WN]|[YH]}[QT]WWAS{I|L} 3.2315;3.2315;2.1102 -;-;- 45 NaN NaN 127025.9 NaN 7385 2704 10085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10093 49.706 NaN 855430 35 0 68123 0.327 + 2681 DVHGPDWHL 9 84 538.2513336976818 1074.4881144621636 2 538.2514038085938 MULTI HCD FTMS 0 0 0 10092 293497.78125 0.06703778270000993 10 -0.2784843444824219 1 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 85.27202061508552 0.004649858145912257 2 DVHGPDWH{I|L} 9 0 + 77.871 0 0 7.2472 7.2472 91.541 0 0 0 55.24613421077092 9.009461452434238 9.009461452434238 9.444152858125108 0 2.548455006504028 2 0.3054621874040891 0 + + DVHGPDWH{I|L};[HV]DGPDWH{I|L};[HV]GDPDWH{I|L};{[HG]|PP}VDPDWH{I|L};{[HG]|PP}[DP]VDWH{I|L};DVH[WH][DV][PA];{[HG]|PP}[DP]W[DV]H{I|L};{[HG]|PP}[DP]WH[DV]{I|L} 7.2472;6.3683;4.5443;4.2641;3.5721;1.8081;1.6668;1.0323 +;-;-;-;-;-;-;- + 718 + NaN NaN 217516.1 NaN 7386 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10094 49.711 NaN 403000 35 0 49419 0.261 + 17809 MFRWPAIS 8 64 504.2623506171484 NaN 0 504.2795715332031 PEAK HCD FTMS 0 0 0 10092 11561.6474609375 0.8274777972873781 2 -0.052471160888671875 2 Unmodified _MFRWPAIS_ REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF 18.13498045792455 0.38579626240450227 2 SA{I|L}Q 4 -1 24.68 0 0 2.4521 0 0 131.06078930646999 473.23237024478755 604.2931595512575 0 0 0 0 0 0 0 0.4247425010840047 0 SA{I|L}Q 2.4521 - 60 + NaN NaN 144286.9 NaN 7387 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10095 49.714 NaN 162420 35 0 13216 0.261 + 21605 PYNQQHLYF 9 51 605.2883166955793 1208.5620804579585 2 605.2882080078125 MULTI HCD FTMS 0 0 0 10092 78500.4921875 0.861570468142457 2 -0.052471160888671875 3 Unmodified _PYNQQHLYF_ ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF 43.77239144664712 0.04802738721622131 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NQQH{I|L}Y{M(Oxidation (M))|F} 9 0 + 69.944 0 0 5.7874 5.7874 88.216 0 0 0 25.642492736872597 64.45940619637945 25.642492736872597 9.208187539523749 0 1.3807196863200843 2 0 0.805462187404089 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NQQH{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGQQH{I|L}Y{M(Oxidation (M))|F} 5.7874;5.0255 +;- + 73 NaN NaN 103193.6 NaN 7388 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10096 49.718 NaN 101480 35 0 11347 0.261 + 801 ATPEFVQGKEF 11 47 626.8124090889718 1251.6102652447435 2 627.2936401367188 MULTI HCD FTMS 0 0 0 10092 20566.125 1 0 0 4 Unmodified _ATPEFVQGKEF_ ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1 5.296884461304476 0.39569033063702824 2 {[QS]|[NT]}S{I|L}{M(Oxidation (M))|F}V{[WT]|[RM]}S 9 8 34.627 0 0 2.7666 0 0 0 213.0516756647094 213.0516756647094 18.428637390930266 0 0 0 0 0 0 0.4247425010840047 0 {[QS]|[NT]}S{I|L}{M(Oxidation (M))|F}V{[WT]|[RM]}S 2.7666 - 84 + NaN NaN 102007.2 NaN 7389 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10097 49.721 NaN 173290 35 0 10760 0.261 + 31460 VYDTVFKHF 9 59 578.2952426255071 1154.575932317814 2 578.2950439453125 MULTI HCD FTMS 0 0 0 10092 83839.609375 0.9107664496855613 -4 0.10512161254882812 5 Unmodified _VYDTVFKHF_ ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L 51.629811660486645 0.02929079705179888 2 VYDT 4 5 63.532 0 0 5.5026 0 0 0 673.3469332330686 673.3469332330686 41.74356583258927 0 0 0 0 1.1861818737241734 2 0.4247425010840047 0 + VYDT 5.5026 + + 147 + NaN NaN 118597.9 NaN 7390 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10098 49.724 NaN 100050 35 0 4538.7 0.261 + 33585 YIPVWPHL 8 39 512.7864377984002 1023.5583226636005 2 512.6475219726562 MULTI HCD FTMS 0 0 0 10092 6125.43310546875 0.271036886497242 5 -0.13128280639648438 6 Unmodified _YIPVWPHL_ ENST00000425497.5_1_20:48895601-48895982:+|nuORF 11.114462752807354 0.5120171699125776 2 [Y{I|L}][WK]GV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8 6 + 27.113 0 0 2.6489 2.6489 82.576 0 0 0 15.686362358410125 1.1709124234504102 1.1709124234504102 6.409780573583323 0 0 2 0 0 [Y{I|L}][WK]GV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][WK]R{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 2.6489;2.0227 -;- 16 NaN NaN 94359.7 NaN 7391 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10099 49.728 NaN 78488 35 0 4955.5 0.261 + 23743 RRDKAGQR 8 50 493.78534846192446 NaN 0 493.7851867675781 PEAK HCD FTMS 0 0 0 10092 28279.72265625 0.9455266273503123 1 -0.02622222900390625 7 Unmodified _RRDKAGQR_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 2.302733041254933 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 2.2185 0 0 0.2251 0 0 363.5247852033427 471.97748743228755 835.5022726356302 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.2251 - 1 + NaN NaN 96014.3 NaN 7392 2705 10092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10101 49.733 NaN 715500 35 0 113930 0.326 + 3555 EITDMDTVI 9 54 518.7470885363149 1035.4796241394297 2 518.7471923828125 MULTI HCD FTMS 0 0 0 10100 266388.34375 0.3090422598834008 13 -0.3606681823730469 1 Unmodified _EITDMDTVI_ REV__ENSG00000130985|ENST00000335972|UBA1;REV__ENST00000490869.1_1_X:47062096-47065733:+|nuORF;REV__nc|ENSG00000130985|P22314-2|UBA1 26.88365393820708 0.12808753336095696 2 TV{I|L} 3 -1 41.995 0 0 4.0556 0 0 704.26762587715 0 704.26762587715 0 35.00508444608478 0 0 0 0.7302046884880937 0 0.8494850021680094 0 TV{I|L} 4.0556 + + 18 NaN NaN 193897.6 NaN 7393 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10102 49.737 NaN 186500 35 0 14688 0.261 + 12974 KYIHFTPNF 9 64 583.8038681842113 1165.5931834352225 2 583.8035278320312 MULTI HCD FTMS 0 0 0 10100 68491.109375 0.3822910175676978 3 -0.07875823974609375 2 Unmodified _KYIHFTPNF_ ENSG00000137975|ENST00000370565|CLCA2 45.739877483867886 0.03899552410870734 2 K[Y{I|L}]H{M(Oxidation (M))|F}TP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9 0 + 48.21 0 0 4.1361 4.1361 88.84 0 0 0 39.498643667695745 4.137342758552691 4.137342758552691 22.233200343714326 0 1.9247425010840047 0 0.6109243748081782 0 + + K[Y{I|L}]H{M(Oxidation (M))|F}TP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[WN]|[YH]}[K{I|L}]{M(Oxidation (M))|F}TP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};K[Y{I|L}]H{M(Oxidation (M))|F}VV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[QT]{M(Oxidation (M))|F}T[VP]{[NV]|[RG]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[HG]|PP}[WP]RRP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4.1361;2.2286;1.5184;1.0048;0.82463 +;-;-;-;- + 146 + NaN NaN 118980.4 NaN 7394 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10103 49.741 NaN 123980 35 0 13002 0.262 + 106 ADKMDMSL 8 43 484.70680835063496 967.3990637680699 2 484.7070007324219 MULTI HCD FTMS 0 0 0 10100 56357.5234375 0.738414173268324 3 -0.07875823974609375 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ADKMDM(Oxidation (M))SL_ ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF 45.69961567697781 0.1577113171574352 2 {M(Oxidation (M))|F}S{I|L} 3 5 39.693 0 0 4.103 0 0 602.239061424025 0 602.239061424025 0 27.552725051033065 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + {M(Oxidation (M))|F}S{I|L} 4.103 + + 19 NaN NaN 115420.6 NaN 7395 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10104 49.744 NaN 153950 35 0 19975 0.261 + 34363 YPEGFEIHSM 10 60 613.2633945636383 1224.5122361940764 2 613.263671875 MULTI HCD FTMS 0 0 0 10100 72690.6875 0.24478584808368237 -11 0.3054466247558594 4 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 85.64151623876279 0.0013369395341731622 2 YPEG{M(Oxidation (M))|F}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 0 + 104.7 0 0 8.5506 8.5506 96.722 0 0 0 88.24925630161275 11.433852901485295 11.433852901485295 33.01538440272459 0 1.8494850021680094 1.6989700043360187 1.4604093769761874 0 + + YPEG{M(Oxidation (M))|F}E{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE][HQ]Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[EP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[EP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ME 8.5506;5.8544;5.6282;3.6017;3.4996;3.3558 +;-;-;-;-;- + 391 + NaN NaN 114623 NaN 7396 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10105 49.747 NaN 90547 35 0 11368 0.261 + -1 LVYGPDCQY 9 44 557.7476861092797 1113.4808192853593 2 557.7483520507812 MULTI HCD FTMS 0 0 0 10100 34419.08203125 0.35780903207320625 15 -0.4197578430175781 5 Carbamidomethyl (C) _LVYGPDC(Carbamidomethyl (C))QY_ REV__SVEP1|p.E2800Q|1|0.61|ENSG00000165124|chr9:110407202-110407202|C/G|missense_variant 1.844237919475145 0.33703635659052655 2 {I|L}PAAR 5 -1 41.013 0 0 3.6834 0 0 0 602.1560762994749 602.1560762994749 35.52887198244136 0 0 0 0 0.3054621874040891 0 0 0 {I|L}PAAR 3.6834 - 18 + NaN NaN 92141.5 NaN 7397 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10106 49.751 NaN 78316 35 0 14494 0.262 + 30335 VLDPRDII 8 45 470.7769491584825 939.5393453837651 2 470.77691650390625 MULTI HCD FTMS 0 0 0 10100 20273.556640625 0.1904498545911062 4 -0.10506057739257812 6 Unmodified _VLDPRDII_ ENSG00000137411|ENST00000676266|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF;ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-2|VARS2;nc|ENSG00000137411|Q5ST30-3|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2 12.531546534597751 0.5015908124873912 2 [{I|L}V]DC(Carbamidomethyl (C)) 4 5 40.445 0 0 4.3048 0 0 0 449.31308923892817 449.31308923892817 35.84121882396211 0 0 0 0 0.4247425010840047 2 0 0 [{I|L}V]DC(Carbamidomethyl (C)) 4.3048 - 13 + NaN NaN 99088.6 NaN 7398 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10107 49.754 NaN 156040 35 0 16068 0.261 -1 MAVIDGNVM 9 64 491.22236894678895 980.4301849603779 2 491.2395324707031 MULTI HCD FTMS 0 0 0 10100 18267.853515625 0.5234988269168707 7 -0.18627166748046875 7 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 15.847184025352803 0.2234401846867398 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.6487 0 0 716.3157573254155 0 716.3157573254155 0 20.473638051534156 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.6487 + + 44 + NaN NaN 102613.3 NaN 7399 2706 10100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10109 49.759 NaN 756020 35 0 145130 0.326 + 23126 RFDSDVGEF 9 69 536.2407555640027 1070.4669581948053 2 536.2408447265625 MULTI HCD FTMS 0 0 0 10108 248590.015625 0.8147861791751454 1 -0.02292633056640625 1 Unmodified _RFDSDVGEF_ ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000223865|ENST00000418931|HLA-DPB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;nc|ENSG00000232629|P05538-2|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2 45.739877483867886 0.03899552410870734 2 {[DA]|[EG]}[YR]DVGE{M(Oxidation (M))|F} 9 4 + 62.087 0 0 5.8 5.8 85.947 0 0 0 8.133637307377057 41.00501891384965 8.133637307377057 5.751349721325951 0 1.6747425010840047 1.2218487496163564 0.4247425010840047 0 {[DA]|[EG]}[YR]DVGE{M(Oxidation (M))|F};{[DA]|[EG]}{M(Oxidation (M))|F}{[WT]|[RM]}VW{M(Oxidation (M))|F};{[DA]|[EG]}{M(Oxidation (M))|F}[TA]DRE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]G{[WT]|[RM]}VW{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]G[TA]DRE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][QT]DRE{M(Oxidation (M))|F};{[SA]|[TG]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SDRE{M(Oxidation (M))|F} 5.8;5.2627;4.8408;3.9568;3.5349;3.4921;2.9247 -;-;-;-;-;-;- 328 NaN NaN 195349.6 NaN 7400 2707 10108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10110 49.763 NaN 366900 35 0 60882 0.261 + 16241 LPYGREDVL 9 63 531.2848713133718 1060.5551896935435 2 531.284912109375 MULTI HCD FTMS 0 0 0 10108 145854.9375 0.4140612469109692 5 -0.13704681396484375 2 Unmodified _LPYGREDVL_ CTSS|p.E240K|1|0.15|ENSG00000163131|chr1:150750081-150750081|C/T|missense_variant;ENSG00000163131|ENST00000368985|CTSS;nc|ENSG00000163131|P25774-2|CTSS 26.268140514670165 0.13340543277302316 2 {I|L}PY 3 6 53.94 0 0 5.086 0 0 0 684.3320810698103 684.3320810698103 42.70303756120384 0 0 0 0 0.7742275032520141 2 0 0 + {I|L}PY 5.086 + + 89 + NaN NaN 136743.6 NaN 7401 2707 10108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10111 49.767 NaN 197680 35 0 36718 0.261 + -1 HNMAEPFVLE 10 52 601.7791368793294 1201.5437208254586 2 601.779296875 MULTI HCD FTMS 0 0 0 10108 149505.171875 0.6675802087176484 17 -0.4755859375 3 Oxidation (M) _HNM(Oxidation (M))AEPFVLE_ REV__ENSG00000135638|ENST00000258106|EMX1 22.736283301280096 0.29844449404982915 2 NVE{I|L} 4 -1 53.488 0 0 4.4516 0 0 728.2951527326187 0 728.2951527326187 0 45.52887198244136 0 0 0 0.9247425010840047 0 0 1.2302046884880937 NVE{I|L} 4.4516 - 62 NaN NaN 116237.4 NaN 7402 2707 10108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10112 49.77 NaN 320150 35 0 19889 0.261 + 12855 KYFLKPEVL 9 82 568.8391668237967 1135.6637807143934 2 568.8228759765625 MULTI HCD FTMS 0 0 0 10108 47668.796875 0.46755784256321614 -5 0.131317138671875 4 Unmodified _KYFLKPEVL_ ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 27.223235318498237 0.1251536255799991 2 KY{I|L}D{I|L}PK{M(Oxidation (M))|F}{I|L} 9 5 + 44.435 0 0 3.9127 3.9127 87.52 0 0 0 12.545547185235076 9.009461452434238 9.009461452434238 14.350781693192967 0 0.1861818737241735 0 0 0 KY{I|L}D{I|L}PK{M(Oxidation (M))|F}{I|L};[YK]{I|L}D{I|L}[KP]{M(Oxidation (M))|F}{I|L};KY{I|L}{M(Oxidation (M))|F}K{[QN]|[E{I|L}]|[KN]}[VP];KY{M(Oxidation (M))|F}{I|L}K{[QN]|[E{I|L}]|[KN]}[VP];[YK]{I|L}{M(Oxidation (M))|F}[DP][K{I|L}]{I|L};[EP]V{[HG]|PP}{I|L}[KP]{M(Oxidation (M))|F}{I|L};[EP]VK{M(Oxidation (M))|F}Y[K{I|L}]{I|L};[KP]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}Y[K{I|L}]{I|L} 3.9127;2.649;2.2739;1.8538;0.95303;0.82168;0.68224;0.13649 -;-;-;-;-;-;-;- 497 + NaN NaN 134730.6 NaN 7403 2707 10108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10113 49.773 NaN 228600 35 0 26729 0.261 + 24934 RYSVASFKF 9 58 552.7953156596444 1103.5760783860887 2 552.7949829101562 MULTI HCD FTMS 0 0 0 10108 73472.5 1 0 0 5 Unmodified _RYSVASFKF_ ENSG00000164976|ENST00000297625|MYORG 10.799506525563784 0.2670509983294061 2 S{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4 5 32.356 0 0 2.9319 0 0 576.3021717755875 0 576.3021717755875 0 26.871739432769516 0 0 0 1.0189301784845295 0 0 0 + S{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.9319 + + 132 NaN NaN 140474.9 NaN 7404 2707 10108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10114 49.777 NaN 119850 35 0 10851 0.261 + 21470 PYAKPIPAQF 10 52 566.3135911043811 1130.612629275562 2 566.3131713867188 MULTI HCD FTMS 0 0 0 10108 76244.8125 1 0 0 6 Unmodified _PYAKPIPAQF_ ENSG00000136709|ENST00000322313|WDR33 43.85829265575387 0.11192494793849486 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AK[{I|L}P][PA]Q{M(Oxidation (M))|F} 10 0 + 50.111 0 0 4.4322 4.4322 90.708 0 0 0 24.25968732272281 43.03273116069214 24.25968732272281 50.11107503885448 0 1 2 0 0.4247425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AK[{I|L}P][PA]Q{M(Oxidation (M))|F} 4.4322 + + 78 NaN NaN 108798.8 NaN 7405 2707 10108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10116 49.782 NaN 1066100 35 0 146920 0.327 + 24793 RYPDRITLI 9 101 573.8350956172454 1145.6556383012908 2 573.835205078125 MULTI HCD FTMS 0 0 0 10115 593769.9375 0.2812677192713196 6 -0.17009735107421875 1 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 96.36657018975838 0.004359138328518304 2 RYPD 4 5 56.266 0 0 4.9112 0 0 0 611.3883609965283 611.3883609965283 25.82030518180558 0 0 0 0 1.2134679910804405 1.3979400086720375 0.5994850021680094 0 + RYPD 4.9112 + + 727 + NaN NaN 247680.8 NaN 7406 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10117 49.786 NaN 731390 35 0 38394 0.262 + 24676 RYLSPKYIKMF 11 76 482.60400107569274 1444.7901738272783 3 482.93841552734375 MULTI HCD FTMS 0 0 0 10115 308726.65625 0.7308197643697391 5 -0.13709640502929688 2 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 72.18682940623714 0.013206789122802947 2 [Y{I|L}]RSPKY{I|L}KM{M(Oxidation (M))|F} 11 2 + 104.67 0 0 7.2448 7.2448 92.568 0 0 0 13.979400086720375 10 10 13.438265792396265 0 3.048455006504028 1.3979400086720375 2.1237125054200234 0 [Y{I|L}]RSPKY{I|L}KM{M(Oxidation (M))|F};[Y{I|L}]RS[Q{I|L}]{M(Oxidation (M))|F}{I|L}KM{M(Oxidation (M))|F};[YR]{I|L}SPKY{I|L}KM{M(Oxidation (M))|F};[YR]{I|L}S[Q{I|L}]{M(Oxidation (M))|F}{I|L}KM{M(Oxidation (M))|F};[KP][YT][RV]Y{I|L}KM{M(Oxidation (M))|F};[Y{I|L}][VG]G[RV]Y{I|L}KM{M(Oxidation (M))|F} 7.2448;6.3147;6.2773;5.3471;4.2538;3.9672 -;-;+;-;-;- + 971 NaN NaN 211379.8 NaN 7407 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10118 49.79 NaN 573400 35 0 90947 0.261 + 15258 LPAAGVGDMVM 11 77 546.7569669014916 1091.4993808697832 2 546.7572021484375 MULTI HCD FTMS 0 0 0 10115 312833.375 0.4847985832622085 17 -0.4789314270019531 3 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 149.9946105101851 9.732271159423064E-05 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 0 + 98.549 0 0 9.0288 9.0288 94.71 0 0 0 4.981979378655879 77.65926704826019 4.981979378655879 11.575773191777941 0 3.5994850021680094 0 0.805462187404089 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AAG[PS]S{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AQ[PS]S{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG{I|L}GD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AN[TP]S{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}P]AGG[TP]S{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[QN]|[E{I|L}]|[KN]}[{I|L}P]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.0288;7.9683;7.1678;6.7518;6.1072;5.9121;4.8907;4.0511;2.9513 +;-;-;-;-;-;-;-;- + 1452 NaN NaN 183373.8 NaN 7408 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10119 49.793 NaN 477490 35 0 106270 0.261 + 7562 FYDDKVSAL 9 70 529.2630158579223 1056.5114787826444 2 529.2630004882812 MULTI HCD FTMS 0 0 0 10115 239858.671875 1 0 0 4 Unmodified _FYDDKVSAL_ ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant 71.70789743142352 0.008535567138151097 2 [Y{M(Oxidation (M))|F}]DDKVSA{I|L} 9 0 + 70.218 0 0 6.6462 6.6462 93.49 0 0 0 5.6424927368725974 53.76439250769556 5.6424927368725974 32.65846744716098 0 2.1747425010840047 0 0.28872548999643577 0 + + [Y{M(Oxidation (M))|F}]DDKVSA{I|L};[Y{M(Oxidation (M))|F}]DDKV[TA]V;[Y{M(Oxidation (M))|F}]DDK[K{I|L}]E;[Y{M(Oxidation (M))|F}][SG][DV]VSA{I|L};[Y{M(Oxidation (M))|F}]DDKG[{I|L}T]V 6.6462;3.5551;3.3259;3.2966;3.0576 +;-;-;-;- + 219 NaN NaN 172113 NaN 7409 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10120 49.796 NaN 717200 35 0 62270 0.261 + 8961 HPDVEVDGF 9 77 507.7298876627839 1013.4452223923678 2 507.7298583984375 MULTI HCD FTMS 0 0 0 10115 194989.4375 1 0 0 5 Unmodified _HPDVEVDGF_ ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion 39.957323273324995 0.06554068735427583 2 VDG{M(Oxidation (M))|F} 4 5 50.522 0 0 4.9851 0 0 577.2497705874835 0 577.2497705874835 0 22.31721202829526 0 0 0 2 0 1 0 + VDG{M(Oxidation (M))|F} 4.9851 + + 269 + NaN NaN 206986.7 NaN 7410 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10121 49.8 NaN 232310 35 0 16375 0.261 + 1371 AYPHNLMTF 9 62 555.2577693209265 1108.500985708653 2 555.2581787109375 MULTI HCD FTMS 0 0 0 10115 76349.7421875 0.0701496044711221 37 -1.0496864318847656 6 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 65.23502041540118 0.010630085227462206 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 3 + 50.849 0 0 4.5872 4.5872 82.347 0 0 0 12.432562101416167 36.936202020356674 12.432562101416167 1.4612803567823818 0 1.6989700043360187 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ][VP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}[Y{I|L}]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[KS]H[C(Carbamidomethyl (C))K]{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 4.5872;4.4554;3.1781;2.0556 -;-;-;- 112 NaN NaN 132338.6 NaN 7411 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10122 49.803 NaN 50490 35 0 4980.9 0.261 + 24340 RYIDRIHIF 9 34 616.8494956235297 NaN 0 616.8485717773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 2.282774691075616 0.2841848346883669 2 E 1 9 5.4846 0 0 0.44529 0 0 634.4036898781156 465.2225741022094 1099.6262639803251 0 0 0 0 0 0 0 0 0 E 0.44529 - 3 + NaN NaN 105414.8 NaN 7412 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10123 49.806 NaN 221780 35 0 24845 0.261 -1 0 36 646.967551622822 NaN 0 647.0441284179688 PEAK HCD FTMS 0 0 0 10115 30139.12109375 1 0 0 8 NaN NaN 2 N 1 -1 3.4949 0 0 0.27052 0 0 599.7016304899815 575.1561373346311 1174.8577678246127 0 0 0 0 0 0 0 0 0 N 0.27052 - 1 + NaN NaN 123269.8 NaN 7413 2708 10115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10125 49.811 NaN 2624300 35 0 1128500 0.327 + 24409 RYKGPGFEYF 10 53 421.8767607381047 1262.608452814514 3 421.8768310546875 MULTI HCD FTMS 0 0 0 10124 1134392.625 1 0 0 1 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 15.738622578938676 0.3638982514236938 2 RY{M(Oxidation (M))|F} 3 7 36.198 0 0 2.8669 0 0 778.3654396435188 0 778.3654396435188 0 29.20818753952375 0 0 0 1 0 0 0 RY{M(Oxidation (M))|F} 2.8669 - 20 NaN NaN 474216.6 NaN 7414 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10126 49.816 NaN 953980 35 0 81159 0.261 + 24407 RYKGPGFEYF 10 100 632.3115346331087 1262.6085163330174 2 632.3116455078125 MULTI HCD FTMS 0 0 0 10124 574344.4375 1 0 0 2 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 96.0343551737317 0.0005392591298959663 2 [YR]KGPG{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 10 0 + 99.479 0 0 7.8789 7.8789 90.724 0 0 0 20.597718523607966 63.0842309438912 20.597718523607966 8.476277995878547 0 1.6747425010840047 1.2218487496163564 0.805462187404089 1.0343181179205065 + + [YR]KGPG{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]KGPGE{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[YR]KGPG{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YR]K[NP]{M(Oxidation (M))|F}EY{M(Oxidation (M))|F};[YR]KGPGEY{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KGPGYE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KGPGY{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[YR]KGPG{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}E;[YR]K[NP]E{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[YR]KGYGPE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.8789;7.2075;6.3858;6.2553;5.8543;5.7337;5.6705;5.6074;5.584;5.3558 +;-;-;-;-;-;-;-;-;- + 6220 NaN NaN 230002.8 NaN 7415 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10127 49.819 NaN 283090 35 0 75561 0.263 + 21836 QATAQDPVF 9 47 488.74033913649856 975.4661253397971 2 488.7405090332031 MULTI HCD FTMS 0 0 0 10124 147833.90625 0.8206818306014484 -1 0.029582977294921875 3 Unmodified _QATAQDPVF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 32.78568957990786 0.09846250359632436 2 DPV{M(Oxidation (M))|F} 4 5 48.488 0 0 4.9707 0 0 499.23871183809456 0 499.23871183809456 0 48.48767215588211 0 0 0 1.305462187404089 0 0.3494850021680094 0 + DPV{M(Oxidation (M))|F} 4.9707 + + 21 NaN NaN 116047.9 NaN 7416 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10128 49.823 NaN 241660 35 0 14991 0.261 + 3753 ENMLLRHGE 9 73 549.7718691589262 1097.5291853846522 2 549.7717895507812 MULTI HCD FTMS 0 0 0 10124 106671.8671875 1 0 0 4 Unmodified _ENMLLRHGE_ ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B 22.736283301280096 0.1639198954644489 2 [YR]KYG[WP]E 8 8 + 65.851 0 0 6 6 89.599 0 0 0 10.448631281271183 4.771212547196626 4.771212547196626 10.448631281271183 0 1.642159058960253 1.3979400086720375 0 0.3054621874040891 [YR]KYG[WP]E;[YR]KYGE[WP];[YR]KGY[WP]E;[YR]KYEG[WP];[YR]GKYE[WP];[YR]GE[YK][WP] 6;5.048;4.9441;4.6208;3.2188;2.424 -;-;-;-;-;- 517 NaN NaN 125950.8 NaN 7417 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10129 49.826 NaN 92862 35 0 19105 0.261 -1 NEAVECLL 8 41 474.22877155517176 946.4429901771435 2 474.2291564941406 MULTI HCD FTMS 0 0 0 10124 48029.96484375 0.8042796856710299 -5 0.12793350219726562 5 Carbamidomethyl (C) _NEAVEC(Carbamidomethyl (C))LL_ ENSG00000136628|ENST00000366923|EPRS1 7.289230182591677 0.5311777711368266 2 {I|L}{I|L} 2 -1 19.464 0 0 2.0565 0 0 702.2604847638687 0 702.2604847638687 0 5.484550065040281 0 0 0 0 0 0 0 {I|L}{I|L} 2.0565 + + 4 NaN NaN 99612.2 NaN 7418 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10130 49.829 NaN 53060 35 0 4527.5 0.261 + 24339 RYIDRIHIF 9 39 616.8488084441427 1231.6830639550853 2 617.3106079101562 MULTI HCD FTMS 0 0 0 10124 14012.9326171875 0.1635275209798074 9 -0.2556571960449219 6 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 4.5288652416199255 0.31668488241058723 2 {M(Oxidation (M))|F}S 2 9 10.969 0 0 0.89058 0 0 164.15610837246646 830.4038790338499 994.5599874063164 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}S 0.89058 - 5 + NaN NaN 93692.6 NaN 7419 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10131 49.833 NaN 97634 35 0 8287.1 0.261 + 23948 RVALRCRPLVP 11 50 640.3930855896449 1278.7716182460897 2 640.3934936523438 MULTI HCD FTMS 0 0 0 10124 22364.75 1 0 0 7 Unmodified _RVALRCRPLVP_ ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B;KIF4A|p.I163Nfs*9|1|0.27|ENSG00000090889|chrX:70299174-70299174|T/-|frameshift_variant;nc|ENSG00000090889|O95239-2|KIF4A 1.1933415558491238 0.4136870758253112 2 K 1 11 4.6041 0 0 0.36004 0 0 594.4338019392522 553.2329805963499 1147.6667825356021 0 0 0 0 0 0 0 0 0 K 0.36004 - 2 + NaN NaN 101421.5 NaN 7420 2709 10124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10133 49.838 NaN 570350 35 0 71839 0.327 + 2297 DLTWPPAI 8 67 456.74671966649055 NaN 0 456.7611389160156 PEAK HCD FTMS 0 0 0 10132 10303.107421875 0.7595235950960021 -1 0.026302337646484375 1 Unmodified _DLTWPPAI_ ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35 20.871210003555333 0.3841330378571171 2 {I|L}ADRP 5 6 22.294 0 0 2.446 0 0 131.06588266040802 225.0889834039672 356.15486606437526 0 0 0 0 0 0.3252574989159953 0 0.7059771852360797 0 {I|L}ADRP 2.446 - 215 + NaN NaN 169058.8 NaN 7421 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10134 49.842 NaN 743970 35 0 167510 0.261 + 24336 RYIDRIHIF 9 62 411.5679849081682 1231.6821253247047 3 411.5681457519531 MULTI HCD FTMS 0 0 0 10132 239922.171875 0.09271400454929034 12 -0.3409576416015625 2 Unmodified _RYIDRIHIF_ ENSG00000174231|ENST00000304992|PRPF8 8.97624648632007 0.2828035605319045 2 {I|L}{M(Oxidation (M))|F} 2 7 30.969 0 0 2.5144 0 0 953.5195475705012 0 953.5195475705012 0 12.385606273598313 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.5144 + + 31 + NaN NaN 205944.1 NaN 7422 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10135 49.846 NaN 277910 35 0 16544 0.261 + 34278 YPDRIMNTF 9 73 586.7735938013249 1171.5326346694496 2 586.7740478515625 MULTI HCD FTMS 0 0 0 10132 136428.28125 0.04039392829535875 58 -1.5579147338867188 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 59.05245873256422 0.018907022117377846 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 64.747 0 0 5.5267 5.5267 85.421 0 0 0 18.65865011156764 36.15865011156764 18.65865011156764 5.6246936830414995 0 1.5669015600442577 1.3979400086720375 0 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 5.5267;5.0466;4.9011;4.7407;4.5566;4.3824;4.2606;4.1151;3.7706;3.5964 +;-;-;-;-;-;-;-;-;- + 1022 NaN NaN 125727 NaN 7423 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10136 49.849 NaN 414310 35 0 92427 0.263 + 10442 IPDEINDRVRF 11 56 458.577215082693 1372.709815848279 3 458.5769348144531 MULTI HCD FTMS 0 0 0 10132 128869.1328125 0.9998248893299353 -2 0.05588531494140625 4 Unmodified _IPDEINDRVRF_ ENSG00000114209|ENST00000392750|PDCD10 5.523293073838413 0.3946973793746473 2 {I|L}PD 3 8 44.922 0 0 3.2725 0 0 0 1044.5232869598342 1044.5232869598342 44.921525057367404 0 0 0 0 0.3494850021680094 1.5228787452803376 0 0 + {I|L}PD 3.2725 + + 4 + NaN NaN 142732.4 NaN 7424 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10137 49.852 NaN 192500 35 0 50769 0.261 + 29134 TYIIFNSKRN 10 41 419.2313851154486 1254.6723259465457 3 419.2311096191406 MULTI HCD FTMS 0 0 0 10132 37117.4765625 0.3031689491050236 6 -0.17356109619140625 5 Unmodified _TYIIFNSKRN_ REV__tr|U7SRQ6|U7SRQ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01628PE=4SV=1 6.623454094837244 0.4402447091689353 2 TY{I|L} 3 -1 52.619 0 0 4.1939 0 0 0 874.4540154183702 874.4540154183702 52.61947817248647 0 0 0 0 0.6421590589602533 2 0 0 TY{I|L} 4.1939 + + 11 + NaN NaN 119120.6 NaN 7425 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10138 49.856 NaN 335180 35 0 23226 0.261 + 1107 AYINRASLL 9 77 510.7952643714456 1019.5759758096913 2 510.7950439453125 MULTI HCD FTMS 0 0 0 10132 130672.6484375 0.3752133584317565 -4 0.10506057739257812 6 Unmodified _AYINRASLL_ ENSG00000138663|ENST00000264389|COPS4;nc|ENSG00000138663|Q9BT78-2|COPS4 70.33199760932243 0.0089807860198535 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NRAS{I|L}{I|L} 9 0 + 96.525 0 0 9.4672 9.4672 93.772 0 0 0 12.932802085199441 12.932802085199441 12.932802085199441 9.208187539523749 0 2.805462187404089 2 0.7134679910804405 0.2742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N[VG]AS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GGRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[QA]AAS{I|L}{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}NRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}NRA{I|L}S{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG[VG]AS{I|L}{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}GGRAS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N[VG]A{I|L}S{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GGRA{I|L}S{I|L} 9.4672;8.5641;8.5641;8.0331;7.7456;7.7127;7.3962;6.8425;6.8096;6.8096 +;-;-;-;-;-;-;-;-;- + 1143 NaN NaN 136911.3 NaN 7426 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10139 49.865 NaN 503760 35 0 65578 0.261 + 16124 LPTEQEVRF 9 74 559.7954234888342 1117.5762940444683 2 560.2789306640625 MULTI HCD FTMS 0 0 0 10132 30488.302734375 0.22742098721559867 -3 0.0788116455078125 7 Unmodified _LPTEQEVRF_ ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 45.739877483867886 0.03899552410870734 2 {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F} 9 0 + 67.986 0 0 6.0834 6.0834 93.697 0 0 0 46.07509072285026 14.09256854528806 14.09256854528806 67.98631582357785 0 1.535666875892183 0 0.3807196863200844 0.5 + + {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F} 6.0834 + + 147 + NaN NaN 173052.8 NaN 7427 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10140 49.868 NaN 218470 35 0 26981 0.262 + 15191 LMYQSFRRLF 10 58 454.24548453754534 1359.714624212836 3 454.24591064453125 MULTI HCD FTMS 0 0 0 10132 44296.55859375 0.7558470082741843 -2 0.05588531494140625 8 Unmodified _LMYQSFRRLF_ REV__ENSG00000197653|ENST00000673944|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 16.565877749689598 0.3561603856738253 2 {I|L}M 2 -1 42.206 0 0 3.1041 0 0 0 1112.5700336670413 1112.5700336670413 29.442015340991894 0 0 0 0 0.4247425010840047 2 0 0 {I|L}M 3.1041 + + 33 + NaN NaN 122459.6 NaN 7428 2710 10132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10142 49.873 NaN 2617600 35 0 356360 0.327 + 24846 RYPTSIASL 9 82 504.27959770153905 1006.5446424698781 2 504.2796936035156 MULTI HCD FTMS 0 0 0 10141 1617761.5 0.40303991206555023 -6 0.166595458984375 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 89.40071534611396 0.0045416704840156395 2 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 79.922 0 0 7.9402 0 0 0 128.0721597150489 128.0721597150489 61.50010962965514 0 0 0 0 1.3494850021680094 1.5228787452803376 2.23239816956497 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 7.9402 - 1061 NaN NaN 475453.2 NaN 7429 2711 10141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10143 49.877 NaN 497740 35 0 34502 0.261 + 2682 DVHGPDWHL 9 75 538.2513336976818 1074.4881144621636 2 538.2515869140625 MULTI HCD FTMS 0 0 0 10141 112877.1875 0.025782260892008968 16 -0.4535560607910156 2 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 58.678817012210395 0.019429721296335044 2 [HV]DG[DP]WH{I|L} 9 2 + 52.717 0 0 4.9062 4.9062 82.827 0 0 0 1.5408205654472198 1.5408205654472198 1.5408205654472198 1.5408205654472198 0 1.75 0 0.7134679910804405 0 [HV]DG[DP]WH{I|L};DVHG[DP]WH{I|L} 4.9062;4.7628 -;+ + 254 NaN NaN 152956.3 NaN 7430 2711 10141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10144 49.881 NaN 436260 35 0 90122 0.261 + 10443 IPDEINDRVRF 11 55 458.577215082693 1372.709815848279 3 458.5771484375 MULTI HCD FTMS 0 0 0 10141 97565.640625 0.7569582700787204 -1 0.035312652587890625 3 Unmodified _IPDEINDRVRF_ ENSG00000114209|ENST00000392750|PDCD10 6.234356020891411 0.3915788988406848 2 {I|L}P 2 9 41.198 0 0 3.0012 0 0 0 1159.5496642535272 1159.5496642535272 17.01667520279372 0 0 0 0 0.5 1.5228787452803376 0 0 + {I|L}P 3.0012 + + 13 + NaN NaN 160934.2 NaN 7431 2711 10141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10145 49.884 NaN 69784 35 0 5529.9 0.261 + 31461 VYDTVFKHF 9 47 578.2952426255071 1154.575932317814 2 578.29541015625 MULTI HCD FTMS 0 0 0 10141 52994.09765625 0.5756854848976058 2 -0.0458984375 4 Unmodified _VYDTVFKHF_ ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L 10.823927491677226 0.26684000660059787 2 [YV]D 3 6 34.265 0 0 2.9677 0 0 0 774.3933809869749 774.3933809869749 31.50056192551869 0 0 0 0 0.3807196863200844 2 0 0 + [YV]D 2.9677 + + 15 + NaN NaN 101682.1 NaN 7432 2711 10141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10146 49.888 NaN 584650 35 0 73152 0.261 + 16125 LPTEQEVRF 9 74 559.7954234888342 1117.5762940444683 2 559.7960205078125 MULTI HCD FTMS 0 0 0 10141 159173.390625 0.7125089700996677 -3 0.09119796752929688 5 Unmodified _LPTEQEVRF_ ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 90.13494162714682 0.004522430935000059 2 {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F} 9 0 + 85.116 0 0 7.6161 7.6161 94.34 0 0 0 55.1059905927697 9.137342758552691 9.137342758552691 20.71378981370721 0 2.159379381312206 1.6989700043360187 0.3807196863200844 0.6861818737241735 + + {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};{I|L}PT[DV][DG]VR{M(Oxidation (M))|F};[{I|L}P]TE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};{I|L}P{NN|[MP]|[D{I|L}]|[EV]}S[DG]VR{M(Oxidation (M))|F};[{I|L}P]TESPATR{M(Oxidation (M))|F};{I|L}PT[DV][HK]P[DP];{I|L}P{NN|[MP]|[D{I|L}]|[EV]}SVAEK{M(Oxidation (M))|F};{I|L}P{NN|[MP]|[D{I|L}]|[EV]}S[HK]P[DP];{I|L}M[VP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};[{I|L}P]T[PA]{[ES]|[DT]|[{I|L}C]}TR{M(Oxidation (M))|F} 7.6161;5.7627;5.4801;5.0939;4.9819;4.0609;3.4344;3.3921;3.1507;3.0205 +;-;+;-;-;-;-;-;-;- + 921 + NaN NaN 179731.7 NaN 7433 2711 10141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10147 49.891 NaN 54006 35 0 5790 0.262 + 2371 DPFMPHLP 8 39 477.2306767739916 NaN 0 477.2700500488281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _DPFMPHLP_ REV__ENSG00000134769|ENST00000444659|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-13|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-14|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-16|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-2|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-3|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-4|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-5|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-7|DTNA;REV__nc|ENSG00000134769|Q9Y4J8-9|DTNA;REV__nc|ENSG00000134769|Q9Y4J8|DTNA 2.577480529830294 0.38822285293237185 2 N 1 -1 6.9897 0 0 0.73387 0 0 173.06766350716447 662.3072603815061 835.3749238886705 0 0 0 0 0 0 0 0 0 N 0.73387 - 1 + NaN NaN 90735.8 NaN 7434 2711 10141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10149 49.896 NaN 409670 35 0 54518 0.327 + 34364 YPEGFEIHSM 10 71 613.2633945636383 1224.5122361940764 2 613.2635498046875 MULTI HCD FTMS 0 0 0 10148 200836.625 0.6763172184454781 -5 0.13704681396484375 1 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 134.295615338601 1.1116339284287773E-05 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 118.84 0 0 9.7048 9.7048 98.544 0 0 0 94.8514532483668 16.319459175083608 16.319459175083608 50.441453415473205 0 2.309894379144197 1.5228787452803376 1.9361818737241734 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPE{I|L}{M(Oxidation (M))|F}WE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EPYEGHS{M(Oxidation (M))|F};YPEG{[QG]|[NA]}W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}E{M(Oxidation (M))|F}W{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EGE{M(Oxidation (M))|F}{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}WE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EGE{M(Oxidation (M))|F}[HS]PY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EGE{M(Oxidation (M))|F}[HS]{I|L}{M(Oxidation (M))|F} 9.7048;5.5854;5.4209;5.2443;4.96;4.7573;4.6782;4.5276;4.2954;4.1516 +;-;-;-;-;-;-;-;-;- + 1246 + NaN NaN 150590.4 NaN 7435 2712 10148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10150 49.9 NaN 416980 35 0 18172 0.261 + 6780 FPQYPDKEL 9 91 568.7847866890593 1135.5550204449185 2 568.7848510742188 MULTI HCD FTMS 0 0 0 10148 119341.7109375 0.5491698786607188 -3 0.08453750610351562 2 Unmodified _FPQYPDKEL_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 59.368380827593164 0.01846506874148156 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]K{I|L}E 9 2 + 59.597 0 0 5.2483 5.2483 83.561 0 0 0 9.718939792027115 39.41992052842137 9.718939792027115 1.945830421822663 0 1.305462187404089 1.3979400086720375 0.7491348669726234 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]K{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]Y[DP]K{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]Y[DP]KE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}[DP]K{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}[DP]KE{I|L};[QP]{M(Oxidation (M))|F}Y[DP]K{I|L}E;[QP]{M(Oxidation (M))|F}Y[DP]KE{I|L};[QP]Y{M(Oxidation (M))|F}[DP]K{I|L}E;[QP]Y{M(Oxidation (M))|F}[DP]KE{I|L} 5.2483;5.0769;4.4374;4.266;4.0319;3.8606;3.4851;3.3137;3.3099;3.1385 -;+;-;-;-;-;-;-;-;- + 883 NaN NaN 148345.5 NaN 7436 2712 10148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10151 49.904 NaN 300960 35 0 47871 0.261 + 23709 RQPSLFYHL 9 60 580.8140838336602 1159.6136147341203 2 580.8143920898438 MULTI HCD FTMS 0 0 0 10148 156184.015625 0.551179625705615 -3 0.08453750610351562 3 Unmodified _RQPSLFYHL_ ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant 26.268140514670165 0.13340543277302316 2 [H{I|L}]{[QN]|[E{I|L}]|[KN]}[HV]YH{I|L} 9 6 + 50.608 0 0 4.3642 4.3642 90.628 0 0 0 14.40999983289359 46.62848732905715 14.40999983289359 50.607887415777526 0 1 1.3979400086720375 0.3494850021680094 0 [H{I|L}]{[QN]|[E{I|L}]|[KN]}[HV]YH{I|L} 4.3642 - 66 NaN NaN 138914.4 NaN 7437 2712 10148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10152 49.907 NaN 103300 35 0 13078 0.261 -1 YSCYCCKLS 9 50 620.7418770823163 1239.4692012314324 2 620.7425537109375 MULTI HCD FTMS 0 0 0 10148 37491.8515625 0.5925967590507648 -1 0.022922515869140625 4 3 Carbamidomethyl (C) _YSC(Carbamidomethyl (C))YC(Carbamidomethyl (C))C(Carbamidomethyl (C))KLS_ ENSG00000135269|ENST00000358204|TES;nc|ENSG00000135269|Q9UGI8-2|TES 3.944395688203298 0.32111559684428237 2 TAR{M(Oxidation (M))|F} 4 -1 16.95 0 0 1.3676 0 0 746.2039557253762 0 746.2039557253762 0 7.653631197717983 0 0 0 0.4247425010840047 0 0 0 TAR{M(Oxidation (M))|F} 1.3676 - 22 + NaN NaN 113088 NaN 7438 2712 10148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10153 49.911 NaN 126460 35 0 10744 0.264 + 27689 TANLEAQAL 9 49 465.74832827928327 929.4821036253666 2 466.25006103515625 MULTI HCD FTMS 0 0 0 10148 19576.763671875 0.510936920797639 1 -0.022975921630859375 5 Unmodified _TANLEAQAL_ ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;LGALS3BP-KRT14|1|fusion 27.223235318498237 0.1251536255799991 2 EAQA{I|L} 5 4 52.563 0 0 5.6551 0 0 399.21580702949376 0 399.21580702949376 0 45.57319389984244 0 0 0 1.5 0 0.3494850021680094 0 + EAQA{I|L} 5.6551 + + 83 NaN NaN 101067.3 NaN 7439 2712 10148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10154 49.914 NaN 113420 35 0 11199 0.261 + 2724 DVSAPSAILR 10 59 514.7903483142169 1027.5661436952337 2 514.7904052734375 MULTI HCD FTMS 0 0 0 10148 19406.64453125 0.6909980281642734 1 -0.022975921630859375 6 Unmodified _DVSAPSAILR_ ENSG00000154945|ENST00000285243|ANKRD40 11.494710602746466 0.4035943721457025 2 [DV]S 3 7 22.932 0 0 2.2317 0 0 0 723.4161552521274 723.4161552521274 15.48455006504028 0 0 0 0 0.5 1.3979400086720375 0 0 + [DV]S 2.2317 + + 25 NaN NaN 97189.6 NaN 7440 2712 10148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10156 49.919 NaN 350640 35 0 46449 0.327 + 24794 RYPDRITLI 9 70 573.8350956172454 1145.6556383012908 2 573.8350219726562 MULTI HCD FTMS 0 0 0 10155 182209.3125 0.0863122137382884 11 -0.3155632019042969 1 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 38.175570920033316 0.07371992880350783 2 RY[DP]{I|L} 5 4 38.015 0 0 3.3182 0 0 0 498.30478845767817 498.30478845767817 17.582334120883374 0 0 0 0 0.8807196863200843 1.3010299956639813 0 0 RY[DP]{I|L} 3.3182 - 41 + NaN NaN 140678.3 NaN 7441 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10157 49.923 NaN 315220 35 0 14245 0.262 + 24677 RYLSPKYIKMF 11 62 482.60400107569274 1444.7901738272783 3 482.60394287109375 MULTI HCD FTMS 0 0 0 10155 120248.5703125 0.24697638074146683 9 -0.2597465515136719 2 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 41.566510922350716 0.12686123777427089 2 S[KP]Y{I|L}KM{M(Oxidation (M))|F} 8 3 72.67 0 0 5.0298 0 0 432.2473652508522 0 432.2473652508522 0 72.67010980380633 0 0 0 2.7302046884880937 0 1.3252574989159953 0 + S[KP]Y{I|L}KM{M(Oxidation (M))|F} 5.0298 + + 74 NaN NaN 135596.8 NaN 7442 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10158 49.927 NaN 152820 35 0 28927 0.261 + 20543 PEALHCYQEL 10 48 601.7791368793294 1201.5437208254586 2 601.7792358398438 MULTI HCD FTMS 0 0 0 10155 92094.65625 0.41122704365410495 23 -0.6641883850097656 3 Unmodified _PEALHCYQEL_ ENSG00000177888|ENST00000367405|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant 17.11289562659939 0.35104376501799556 2 NVE{I|L} 4 8 40.433 0 0 3.3651 0 0 728.2935658185562 0 728.2935658185562 0 38.44335023848103 0 0 0 0.4247425010840047 0 0 0.4247425010840047 NVE{I|L} 3.3651 - 38 NaN NaN 110804.2 NaN 7443 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10159 49.93 NaN 400690 35 0 32898 0.261 -1 NMPLSNGLQL 10 76 551.7813626914638 1101.5481724497274 2 551.7621459960938 MULTI HCD FTMS 0 0 0 10155 5788.99169921875 0.04227729988756725 42 -1.1585197448730469 4 Oxidation (M) _NM(Oxidation (M))PLSNGLQL_ ENSG00000139737|ENST00000418532|SLAIN1;nc|ENSG00000139737|Q8ND83-2|SLAIN1;nc|ENSG00000139737|Q8ND83-3|SLAIN1;nc|ENSG00000139737|Q8ND83-4|SLAIN1;nc|ENSG00000139737|Q8ND83|SLAIN1 6.2057823575117 0.44245551207394906 2 {I|L}M{M(Oxidation (M))|F} 3 -1 18.672 0 0 1.6951 0 0 692.3779891995306 0 692.3779891995306 0 3.8958406980030027 0 0 0 0 0 0 0 {I|L}M{M(Oxidation (M))|F} 1.6951 - 84 + NaN NaN 147939 NaN 7444 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10160 49.934 NaN 153570 35 0 48701 0.261 + 19892 NYENKQYLF 9 53 609.793069184339 1217.5715854354778 2 609.7928466796875 MULTI HCD FTMS 0 0 0 10155 51301.45703125 0.49067802493058377 4 -0.12189102172851562 5 Unmodified _NYENKQYLF_ ENSG00000158023|ENST00000288912|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251 13.90604991867851 0.24021115267848145 2 {I|L}{M(Oxidation (M))|F} 2 7 23.856 0 0 1.9593 0 0 939.4039784162125 0 939.4039784162125 0 19.876954943324545 0 0 0 0.28872548999643577 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.9593 + + 7 NaN NaN 112365.4 NaN 7445 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10161 49.937 NaN 176650 35 0 22680 0.261 -1 KYMVYPQTF 9 47 596.7895994844229 1191.5646460356456 2 596.7896118164062 MULTI HCD FTMS 0 0 0 10155 67134.4375 0.9452570485835843 1 -0.033000946044921875 6 Oxidation (M) _KYM(Oxidation (M))VYPQTF_ ENSG00000112996|ENST00000507110|MRPS30 24.990960013464015 0.14443998892849796 2 VY[QP]T{M(Oxidation (M))|F} 6 -1 38.148 0 0 3.2015 0 0 438.19078261543126 0 438.19078261543126 0 28.68440000316717 0 0 0 1.4247425010840047 0 0 0 VY[QP]T{M(Oxidation (M))|F} 3.2015 + + 48 NaN NaN 103712.1 NaN 7446 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10162 49.94 NaN 200480 35 0 43602 0.264 + -1 PCPCLPVL 8 48 449.72936442890176 897.4441759246035 2 449.7292175292969 MULTI HCD FTMS 0 0 0 10155 27812.01953125 0.5332403991103719 1 -0.033000946044921875 7 Carbamidomethyl (C) _PC(Carbamidomethyl (C))PCLPVL_ REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF 11.114462752807354 0.5120171699125776 2 RV{I|L} 3 -1 24.693 0 0 2.7515 0 0 511.177537986525 0 511.177537986525 0 8.239087409443187 0 0 0 0.5 0 0 0 RV{I|L} 2.7515 - 25 NaN NaN 111828.6 NaN 7447 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10163 49.944 NaN 193420 35 0 41854 0.261 + 2327 DMVPMMHLS 9 46 530.7352594417049 1059.4559659502097 2 530.7360229492188 MULTI HCD FTMS 0 0 0 10155 60797.015625 0.6937079002646104 -3 0.08121109008789062 8 Unmodified _DMVPMMHLS_ ENST00000466499.6_1_14:67843246-67847401:+|nuORF 1.844237919475145 0.33703635659052655 2 R 1 9 3.9794 0 0 0.37561 0 0 62.04672258865805 838.3070111035813 900.3537336922394 0 0 0 0 0 0 0 0 0 R 0.37561 - 2 + NaN NaN 117311 NaN 7448 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10164 49.947 NaN 43291 35 0 3781.2 0.261 + 11986 KFWRKKSY 8 32 571.8267474696095 1141.6389420060189 2 571.8269653320312 MULTI HCD FTMS 0 0 0 10155 23758.08203125 0.10459408394231783 11 -0.3155632019042969 9 Unmodified _KFWRKKSY_ REV__tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1 2.0597508629832335 0.5389364538378849 2 Q 1 -1 6.9897 0 0 0.61225 0 0 132.1949141068249 878.3627413385374 1010.5576554453623 0 0 0 0 0 0 0 0 0 Q 0.61225 - 2 + NaN NaN 95198.9 NaN 7449 2713 10155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10166 49.952 NaN 1732100 35 0 289350 0.327 -1 0 73 500.2536018285801 998.4926507239602 2 500.2535705566406 MULTI HCD FTMS 0 0 0 10165 1072342.625 0.7004356401949685 -2 0.05597686767578125 1 NaN NaN 2 STQEPE{I|L} 7 -1 72.035 0 0 7.2144 0 0 196.12121779609532 0 196.12121779609532 0 39.28772774818859 0 0 0 1.8494850021680094 0 1.3754223615525998 0.4247425010840047 STQEPE{I|L} 7.2144 - 844 NaN NaN 356833.6 NaN 7450 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10167 49.956 NaN 340980 35 0 54756 0.261 + 15259 LPAAGVGDMVM 11 68 546.7569669014916 1091.4993808697832 2 546.7570190429688 MULTI HCD FTMS 0 0 0 10165 183716.9375 0.2847065503201879 23 -0.660736083984375 2 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 99.79894945604345 0.019041132516778112 2 AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 3 77.165 0 0 7.0696 0 0 281.17427260566564 0 281.17427260566564 0 69.20609411981054 0 0 0 3.2302046884880937 0 0.805462187404089 0 + AGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.0696 + + 283 NaN NaN 141225 NaN 7451 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10168 49.96 NaN 363130 35 0 62613 0.261 -1 LPEFYFCLS 9 56 588.2785254056823 NaN 0 588.2918090820312 PEAK HCD FTMS 0 0 0 10165 7836.080078125 0.7656759371821271 2 -0.05934906005859375 3 Carbamidomethyl (C) _LPEFYFC(Carbamidomethyl (C))LS_ ENST00000413074.1_1_1:222763317-222763545:+|nuORF 7.910154910731844 0.25691533546754686 2 W{I|L} 2 -1 7.0783 0 0 0.60265 0 0 649.2815858682021 223.07229028873283 872.3538761569349 0 0 0 0 0 0 0 0 0 W{I|L} 0.60265 - 44 + NaN NaN 136293.7 NaN 7452 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10169 49.963 NaN 303400 35 0 21036 0.261 + 8962 HPDVEVDGF 9 62 507.7298876627839 1013.4452223923678 2 507.7297668457031 MULTI HCD FTMS 0 0 0 10165 92283.4453125 0.47327407317896386 6 -0.17422866821289062 4 Unmodified _HPDVEVDGF_ ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion 52.268347100219714 0.028397529699942435 2 {[TV]|[{I|L}S]}[{M(Oxidation (M))|F}T]EVDG{M(Oxidation (M))|F} 9 4 {[TV]|[{I|L}S]}[{M(Oxidation (M))|F}T]E + + 54.702 -7.2141 -1.2497 5.3977 5.3977 62.889 0 0 0 0 44.24483519784328 0 0 0 2 0 1 0 {[TV]|[{I|L}S]}[{M(Oxidation (M))|F}T]EVDG{M(Oxidation (M))|F} 5.3977 - 202 + NaN NaN 128541.1 NaN 7453 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10170 49.967 NaN 180250 35 0 13466 0.261 + -1 QYLKYMTF 8 45 555.2694133428948 NaN 0 555.2578125 PEAK HCD FTMS 0 0 0 10165 6330.5419921875 1 0 0 5 Oxidation (M) _QYLKYM(Oxidation (M))TF_ REV__ENSG00000164761|ENST00000297350|TNFRSF11B 9.347437153973935 0.38822285293237185 2 T{M(Oxidation (M))|F}{I|L}N 4 -1 11.631 0 0 1.0492 0 0 165.10539229364878 465.1892576714945 630.2946499651432 0 0 0 0 0 0 0 0.5 0 T{M(Oxidation (M))|F}{I|L}N 1.0492 - 58 + NaN NaN 117465.2 NaN 7454 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10171 49.97 NaN 489970 35 0 62497 0.261 + -1 YACTMVTTF 9 61 526.7252069337973 1051.4358609343944 2 526.7092895507812 MULTI HCD FTMS 0 0 0 10165 35619.6484375 1 0 0 6 Oxidation (M) _YACTM(Oxidation (M))VTTF_ REV__ENSG00000183695|ENST00000329773|MRGPRX2;REV__MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant 7.910154910731844 0.2910521888787154 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.4699 0 0 785.3088600572445 0 785.3088600572445 0 21.989700043360187 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.4699 + + 14 + NaN NaN 165848 NaN 7455 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10172 49.973 NaN 79177 35 0 6918.2 0.261 + 7972 GEILRTEQW 9 45 566.2932618659108 1130.5719707986216 2 566.2918701171875 MULTI HCD FTMS 0 0 0 10165 20401.63671875 0.4869705456991029 1 -0.032989501953125 7 Unmodified _GEILRTEQW_ ENSG00000104960|ENST00000391842|PTOV1;ENST00000596424.1_1_19:50360315-50362048:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1 14.405379775768559 0.2358970535022398 2 EQW 3 6 33.812 0 0 2.9907 0 0 669.3853626935562 0 669.3853626935562 0 26.822581265925436 0 0 0 1 0 0 0 + EQW 2.9907 + + 27 NaN NaN 102264.1 NaN 7456 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10173 49.976 NaN 193230 35 0 20426 0.264 + 16362 LSAVDVNN 8 57 416.2128476541696 NaN 0 416.22039794921875 PEAK HCD FTMS 0 0 0 10165 6435.70263671875 0.7037286893632008 1 -0.032989501953125 8 Unmodified _LSAVDVNN_ REV__ENSG00000178026|ENST00000318753|LRRC75B;REV__ENST00000446942.5_1_22:24981856-24984799:-|nuORF;REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF 7.289230182591677 0.38822285293237185 2 KEV 3 -1 8.4164 0 0 1.0135 0 0 200.10927577533295 271.07309900455317 471.1823747798861 0 0 0 0 0 0 0 0 0 KEV 1.0135 - 11 + NaN NaN 118494.8 NaN 7457 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10174 49.98 NaN 145190 35 0 10651 0.261 + 10824 ITHRVRFH 8 56 533.3091797348131 NaN 0 533.290771484375 PEAK HCD FTMS 0 0 0 10165 13690.97265625 1 0 0 9 Unmodified _ITHRVRFH_ REV__ENSG00000078900|ENST00000378295|TP73;REV__nc|ENSG00000078900|O15350-11|TP73;REV__nc|ENSG00000078900|O15350-13|TP73;REV__nc|ENSG00000078900|O15350-5|TP73;REV__nc|ENSG00000078900|O15350-6|TP73;REV__nc|ENSG00000078900|O15350-8|TP73 4.75600775471527 0.38822285293237185 2 ENTV 4 -1 12.652 0 0 1.1884 0 0 132.13536960644655 486.2427157037719 618.3780853102185 0 0 0 0 0 0 0 0 0 ENTV 1.1884 - 37 + NaN NaN 103859 NaN 7458 2714 10165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10176 49.985 NaN 802820 35 0 335650 0.326 + 7193 FSLHPGQPAYF 11 60 421.8767607381047 1262.608452814514 3 421.87677001953125 MULTI HCD FTMS 0 0 0 10175 245064.984375 0.2160318914053236 6 -0.1674957275390625 1 Unmodified _FSLHPGQPAYF_ REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF 9.243775137331637 0.3765410959215665 2 RY{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.8669 0 0 778.3635222317452 0 778.3635222317452 0 33.979400086720375 0 0 0 1 0 0 0 RY{M(Oxidation (M))|F} 2.8669 - 13 NaN NaN 196275.6 NaN 7459 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10177 49.989 NaN 272850 35 0 32985 0.261 + 15572 LPDRDLAL 8 48 456.76105840284265 NaN 0 456.7610778808594 PEAK HCD FTMS 0 0 0 10175 208273.21875 0.4935877772141024 6 -0.1674957275390625 2 Unmodified _LPDRDLAL_ ENSG00000077463|ENST00000337491|SIRT6;ENST00000596119.5_1_19:4175573-4175816:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF 38.175570920033316 0.3314496599596639 2 A{I|L}[RD]D 5 5 22.932 0 0 2.5158 0 0 131.09440616326077 207.11423669986564 338.20864286312644 0 0 0 0 0 1.610924374808178 0 0 0 A{I|L}[RD]D 2.5158 - 23 + NaN NaN 122635.7 NaN 7460 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10178 49.993 NaN 215630 35 0 21279 0.261 -1 MRLEEFLMY 9 62 632.2936749503167 NaN 0 632.3114013671875 PEAK HCD FTMS 0 0 0 10175 6545.42529296875 0.7808728023185315 1 -0.02635955810546875 3 2 Oxidation (M) _M(Oxidation (M))RLEEFLM(Oxidation (M))Y_ ULBP1|p.W193R|1|0.48|ENSG00000111981|chr6:149969312-149969312|T/C|missense_variant 10.823927491677226 0.2427956001690155 2 YE 2 -1 19.024 0 0 1.5067 0 0 165.04332945718994 802.4011934869749 967.4445229441649 0 0 0 0 0 0 0 0.805462187404089 0 YE 1.5067 - 197 + NaN NaN 122302.7 NaN 7461 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10179 49.996 NaN 446160 35 0 25503 0.262 + 13140 KYLLKVAEL 9 86 538.8392326204684 1075.6639123077366 2 538.839111328125 MULTI HCD FTMS 0 0 0 10175 63631.3203125 0.9466876256250232 1 -0.02635955810546875 4 Unmodified _KYLLKVAEL_ ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF 23.789781309258295 0.1548179064208189 2 [DV]HGPDWH 8 9 40.94 0 0 3.806 0 0 0 129.2503674863947 129.2503674863947 11.999416639666194 0 0 0 0 0 2 0.3807196863200844 0 [DV]HGPDWH 3.806 - 476 NaN NaN 161704.2 NaN 7462 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10180 50 NaN 332190 35 0 19515 0.261 -1 YYVAGFSILC 10 60 596.7895994844229 1191.5646460356456 2 597.7788696289062 MULTI HCD FTMS 0 0 0 10175 9478.07421875 0.5400773171208365 -3 0.08896636962890625 5 Carbamidomethyl (C) _YYVAGFSILC(Carbamidomethyl (C))_ ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9 11.640296217721598 0.4022326134240651 2 YY{M(Oxidation (M))|F}W{I|L}QKT 8 -1 38.549 0 0 3.2352 0 0 0 58.999607666872095 58.999607666872095 4.4133185204407965 0 0 0 0 0.24299281909993908 2 0 0 YY{M(Oxidation (M))|F}W{I|L}QKT 3.2352 - 187 NaN NaN 135857.9 NaN 7463 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10181 50.003 NaN 98148 35 0 16411 0.262 + 3610 EKNQDVPF 8 45 488.74033913649856 975.4661253397971 2 488.7403564453125 MULTI HCD FTMS 0 0 0 10175 46306.45703125 0.25706462670889185 5 -0.14123916625976562 6 Unmodified _EKNQDVPF_ ENST00000429901.1_1_7:130737210-130792820:-|nuORF 10.823927491677226 0.514154816617796 2 D[VP]{M(Oxidation (M))|F} 4 4 23.188 0 0 2.3771 0 0 499.240037986525 0 499.240037986525 0 16.197887582883936 0 0 0 0.8494850021680094 0 0 0 + D[VP]{M(Oxidation (M))|F} 2.3771 + + 11 NaN NaN 99456.3 NaN 7464 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10182 50.006 NaN 129710 35 0 13861 0.261 + 33313 YFSMFLHI 8 54 529.2630158579223 1056.5114787826444 2 529.2637939453125 MULTI HCD FTMS 0 0 0 10175 16963.69921875 0.07072372696030964 7 -0.193756103515625 7 Unmodified _YFSMFLHI_ ENSG00000133138|ENST00000357242|TBC1D8B;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B 9.347437153973935 0.5250182646323369 2 D 1 8 6.9897 0 0 0.66158 0 0 132.19511139285618 806.2619112604124 938.4570226532685 0 0 0 0 0 0 0 0 0 D 0.66158 - 6 + NaN NaN 101922.8 NaN 7465 2715 10175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10184 50.011 NaN 5607900 35 0 732680 0.327 + 24847 RYPTSIASL 9 93 504.27959770153905 1006.5446424698781 2 504.27978515625 MULTI HCD FTMS 0 0 0 10183 3807757 0.9486429528994128 -1 0.02635955810546875 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 96.36657018975838 0.004359138328518304 2 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 76.766 0 0 7.6267 0 0 0 128.07171940199092 128.07171940199092 60.08385168277917 0 0 0 0 1.3494850021680094 1.6989700043360187 2.2179001828205482 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 7.6267 - 1511 NaN NaN 783963.1 NaN 7466 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10185 50.016 NaN 892910 35 0 158240 0.261 + 16126 LPTEQEVRF 9 81 559.7954234888342 1117.5762940444683 2 560.279052734375 MULTI HCD FTMS 0 0 0 10183 75538.8046875 0.5634655915348287 3 -0.0820465087890625 2 Unmodified _LPTEQEVRF_ ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 65.47368725323818 0.010552856507075443 2 {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F} 9 0 + 69.57 0 0 6.2251 6.2251 90.033 0 0 0 35.52407983041837 5.297633993969981 5.297633993969981 10.796896906561038 0 1.569095041121134 1.2218487496163564 0.3807196863200844 0.5 + + {I|L}PTE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};{I|L}PTE[Q{I|L}]DR{M(Oxidation (M))|F};{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[{I|L}T]PE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F};[VP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VR{M(Oxidation (M))|F} 6.2251;5.259;3.3189;1.6753;0.81081 +;-;-;-;- + 693 + NaN NaN 219954.1 NaN 7467 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10186 50.019 NaN 536240 35 0 28179 0.261 + 1108 AYINRASLL 9 81 510.7952643714456 1019.5759758096913 2 510.7953186035156 MULTI HCD FTMS 0 0 0 10183 192173.765625 0.5518076266520416 2 -0.05579376220703125 3 Unmodified _AYINRASLL_ ENSG00000138663|ENST00000264389|COPS4;nc|ENSG00000138663|Q9BT78-2|COPS4 82.5293158979368 0.005033931517079822 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RN]AS{I|L}{I|L} 9 0 + 70.517 0 0 6.9163 6.9163 89.041 0 0 0 8.57840941039747 8.57840941039747 8.57840941039747 8.57840941039747 0 1.9604093769761874 1.6989700043360187 0.6237125054200234 0.2614393726401688 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RN]AS{I|L}{I|L};AY{I|L}[RN]AS{I|L}{I|L};AY{I|L}[RN]A{I|L}S{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RN]AS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PS][KA]AS{I|L}{I|L};{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}[KA][RD]{I|L} 6.9163;6.075;5.7452;5.2067;5.1619;1.9708 +;+;-;-;-;- + 527 NaN NaN 167390.8 NaN 7468 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10187 50.022 NaN 483650 35 0 74368 0.261 + 26354 SSIDSEPAL 9 61 459.7244561094336 917.4343592856673 2 459.7243957519531 MULTI HCD FTMS 0 0 0 10183 239659.015625 0.443916880779275 -4 0.115325927734375 4 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 112.59319219568356 0.00251905749371435 2 DSEPA{I|L} 6 3 61.802 0 0 6.7364 0 0 287.14830214668126 0 287.14830214668126 0 40.682503180159344 0 0 0 2.3737125054200234 0 1.5044321917401078 0 + DSEPA{I|L} 6.7364 + + 191 NaN NaN 163943.5 NaN 7469 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10188 50.026 NaN 242790 35 0 14997 0.261 -1 YPDRIMNTF 9 69 586.7735938013249 1171.5326346694496 2 586.77392578125 MULTI HCD FTMS 0 0 0 10183 117122.921875 0.03467796313648608 64 -1.7065620422363281 5 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 30.7034409873982 0.10802119112323902 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 -1 + 62.322 0 0 5.3197 5.3197 84.798 0 0 0 21.12704280191288 40.878815171428755 21.12704280191288 4.771212547196626 0 1.2302046884880937 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYNT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPNYT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPYGGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DR{I|L}{M(Oxidation (M))|F}[QA]Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DK[C(Carbamidomethyl (C))K]GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRPGGYT{M(Oxidation (M))|F} 5.3197;4.9125;4.5337;4.3834;4.3158;4.3154;4.1265;3.7203;3.5974;3.5298 +;-;-;-;-;-;-;-;-;- + 771 NaN NaN 125251.9 NaN 7470 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10189 50.029 NaN 659080 35 0 63104 0.261 + 9340 HPSDIEVDL 9 81 512.7508924728904 1023.4872320125809 2 512.768798828125 MULTI HCD FTMS 0 0 0 10183 117025.5625 0.06953166910184781 -6 0.17356109619140625 6 Unmodified _HPSDIEVDL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 30.636539890814138 0.10832830463492794 2 EVD{I|L} 4 5 44.24 0 0 4.3225 0 0 549.2524532931186 0 549.2524532931186 0 21.922203800570223 0 0 0 1.2302046884880937 0 0 0 + EVD{I|L} 4.3225 + + 532 NaN NaN 183760.6 NaN 7471 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10190 50.032 NaN 282770 35 0 21630 0.261 + 26223 SPTKLDVTL 9 67 487.28181818835446 972.549083443509 2 487.2818603515625 MULTI HCD FTMS 0 0 0 10183 135542.625 0.7516206923202492 -2 0.05934906005859375 7 Unmodified _SPTKLDVTL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 51.487983226225225 0.029489205318603332 2 [PS]TK{I|L}DVT{I|L} 9 0 + 45.13 0 0 4.6403 4.6403 83.814 0 0 0 3.339993556128107 18.09054065780998 3.339993556128107 4.854771935914002 0 1.7231975075880328 0 0.805462187404089 0 + + [PS]TK{I|L}DVT{I|L};SPTK{I|L}DVT{I|L};{[QN]|[E{I|L}]|[KN]}K[VG]DVT{I|L};{[RE]|[WV]}{I|L}[WR]T{I|L} 4.6403;4.1412;3.8251;0.89469 +;+;-;- + 182 NaN NaN 124102.4 NaN 7472 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10191 50.036 NaN 129680 35 0 11467 0.261 -1 SYMLVNENRF 10 46 644.8031837003241 1287.591814467448 2 644.8034057617188 MULTI HCD FTMS 0 0 0 10183 29358.369140625 0.254807088897428 -9 0.25237274169921875 8 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 22.774965066868997 0.29808267786580567 2 ENV{I|L}[EC]{M(Oxidation (M))|F} 7 -1 45.578 0 0 3.5398 0 0 435.22361952949376 0 435.22361952949376 0 42.08297602838357 0 0 0 1.6861818737241734 0 0 0 ENV{I|L}[EC]{M(Oxidation (M))|F} 3.5398 - 85 NaN NaN 100704 NaN 7473 2716 10183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10193 50.041 NaN 540940 35 0 68018 0.327 + 34365 YPEGFEIHSM 10 76 613.2633945636383 1224.5122361940764 2 613.263427734375 MULTI HCD FTMS 0 0 0 10192 296956.25 1 0 0 1 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 168.65858592105317 4.592694118198948E-11 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 126.57 0 0 10.336 10.336 97.949 0 0 0 90.81953220983513 17.943839129248204 17.943839129248204 28.042359562158126 0 2.7658715643802765 1.5228787452803376 2.5545970543767123 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YPE{I|L}EW{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};YPEG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E[HS]PY;YP{M(Oxidation (M))|F}W{[QG]|[NA]}GE{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{M(Oxidation (M))|F}E[HS]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EG{[QG]|[NA]}WEPY 10.336;8.0462;7.6229;6.988;6.8928;6.6031;6.5031;6.3661;6.1936;6.1692 +;-;+;-;-;-;-;-;-;- + 5189 + NaN NaN 161845.9 NaN 7474 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10194 50.045 NaN 592840 35 0 35915 0.262 -1 SPVATCKVC 9 87 511.24429521287817 1020.4740374925564 2 511.244140625 MULTI HCD FTMS 0 0 0 10192 188993.59375 0.9286827904854082 1 -0.02625274658203125 2 2 Carbamidomethyl (C) _SPVATC(Carbamidomethyl (C))KVC(Carbamidomethyl (C))_ ENST00000367505.6_1_6:146264444-146264480:-|nuORF 29.081581746732265 0.1154664336125038 2 SPVT 4 -1 56.446 0 0 5.5314 0 0 0 633.2495602158021 633.2495602158021 20.013487579716767 0 0 0 0 1.2059771852360797 1.3979400086720375 0.5994850021680094 0 SPVT 5.5314 - 1302 + NaN NaN 180923.6 NaN 7475 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10195 50.049 NaN 947370 35 0 56177 0.261 + 20291 NYNEKIYEL 9 94 593.2933342955398 1184.5721156578795 2 593.293212890625 MULTI HCD FTMS 0 0 0 10192 437343.625 0.5392680086859358 -3 0.08889007568359375 3 Unmodified _NYNEKIYEL_ ENSG00000070010|ENST00000263202|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-1|UFD1;nc|ENSG00000070010|Q92890-3|UFD1 114.4966697963812 0.002208309420877245 2 NYNEK{I|L}YE{I|L} 9 0 + 105.95 0 0 8.9444 8.9444 90.918 0 0 0 5.50546370719681 5.50546370719681 5.50546370719681 5.50546370719681 0 2.829689690656103 2 1.3539171939081172 0.8252574989159953 + + NYNEK{I|L}YE{I|L};[YN]NEK{I|L}YE{I|L};NYGGEK{I|L}YE{I|L};[YN]GGEK{I|L}YE{I|L};[YN]N{I|L}GS{I|L}YE{I|L};[YN]GG{I|L}GS{I|L}YE{I|L};[YN]N{I|L}A[VS]YE{I|L};[YN]NEK[YE]{I|L}{I|L};[YN]GG{I|L}A[VS]YE{I|L};[YN]GGEK[YE]{I|L}{I|L} 8.9444;8.4796;8.167;7.7022;7.1305;6.3568;5.9885;5.737;5.2149;4.9596 +;+;-;-;-;-;-;-;-;- + 2103 + NaN NaN 238343.9 NaN 7476 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10196 50.052 NaN 338560 35 0 20343 0.261 + 6781 FPQYPDKEL 9 76 568.7847866890593 1135.5550204449185 2 568.7848510742188 MULTI HCD FTMS 0 0 0 10192 170982.265625 0.7868021107523016 2 -0.0525054931640625 4 Unmodified _FPQYPDKEL_ ENSG00000125107|ENST00000317147|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 69.33821966488729 0.009302356455414924 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QYPDKE{I|L} 9 0 + 67.864 0 0 5.9762 5.9762 84.27 0 0 0 16.02568435936442 0.796896906561031 0.796896906561031 0.796896906561031 0 1.8807196863200843 1.3979400086720375 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QYPDKE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QYPDK{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]YPDKE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]YPDK{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}PDKE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG]{M(Oxidation (M))|F}PDK{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[SG][{I|L}V]YQPE;[QP]{M(Oxidation (M))|F}YPDKE{I|L};[QP]{M(Oxidation (M))|F}YPDK{I|L}E;[QP]Y{M(Oxidation (M))|F}PDKE{I|L} 5.9762;5.9061;5.1653;5.0952;4.8801;4.8099;4.7683;4.565;4.4948;4.2797 +;-;-;-;-;-;-;-;-;- + 849 NaN NaN 136111.4 NaN 7477 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10197 50.055 NaN 389400 35 0 40095 0.261 + 19702 NYADQISRL 9 75 540.2776049294713 1078.5406569257425 2 540.278564453125 MULTI HCD FTMS 0 0 0 10192 125437.84375 0.9987283292221535 -1 0.029541015625 5 Unmodified _NYADQISRL_ ENSG00000008294|ENST00000262013|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-2|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3 68.75988807550267 0.009489495184080357 2 [YN]ADQ{I|L}SR{I|L} 9 0 + 92.419 0 0 8.5689 8.5689 90.423 0 0 0 5.344406447039063 5.344406447039063 5.344406447039063 5.344406447039063 0 2.805462187404089 2 0 1.4802046884880937 + + [YN]ADQ{I|L}SR{I|L};YNADQ{I|L}SR{I|L};[YN]AD[AG]{I|L}SR{I|L};YNAD[AG]{I|L}SR{I|L};[YN]ADN[{I|L}T]R{I|L};YGGADQ{I|L}SR{I|L};[YN]ADGG[{I|L}T]R{I|L};YGGAD[AG]{I|L}SR{I|L};{[QN]|[E{I|L}]|[KN]}[KC][KC]SR{I|L} 8.5689;8.0734;7.7152;7.2196;5.8093;5.3653;4.9555;4.5156;2.0714 +;-;-;-;-;-;-;-;- + 464 NaN NaN 147556.9 NaN 7478 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10198 50.059 NaN 121540 35 0 11841 0.261 + 26359 SSLEAEAYA 9 44 470.71571115908733 939.4168693849747 2 470.7165832519531 MULTI HCD FTMS 0 0 0 10192 62989.91015625 0.8840291719341564 -2 0.05590057373046875 6 Unmodified _SSLEAEAYA_ ENSG00000124216|ENST00000244050|SNAI1 6.723162845929126 0.3000504726104499 2 {[CA]|SS}{I|L}D 4 6 21.427 0 0 2.2808 0 0 0 534.2171724908811 534.2171724908811 18.327731244245342 0 0 0 0 0.7614393726401688 0 0 0 {[CA]|SS}{I|L}D 2.2808 - 16 + NaN NaN 113465.3 NaN 7479 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10199 50.062 NaN 187750 35 0 13668 0.261 + 12737 KYAQWEESL 9 64 577.2795251888294 1152.5444974444588 2 577.27880859375 MULTI HCD FTMS 0 0 0 10192 47353.734375 0.5756600697522506 -1 0.029541015625 7 Unmodified _KYAQWEESL_ ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 55.50274090549119 0.023872834264864425 2 WEES{I|L} 5 4 54.949 0 0 4.7676 0 0 490.25429782671813 0 490.25429782671813 0 43.52182518111363 0 0 0 1.6989700043360187 0 0 0 + WEES{I|L} 4.7676 + + 329 NaN NaN 113362.6 NaN 7480 2717 10192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10201 50.067 NaN 403330 35 0 74846 0.327 + 23710 RQPSLFYHL 9 71 580.8140838336602 1159.6136147341203 2 580.8143310546875 MULTI HCD FTMS 0 0 0 10200 175725.546875 0.6201424695471426 3 -0.0853424072265625 1 Unmodified _RQPSLFYHL_ ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant 17.11289562659939 0.2125047172822487 2 [H{I|L}]{[QN]|[E{I|L}]|[KN]}[HV]YH{I|L} 9 6 + 39.154 0 0 3.3765 3.3765 89.2 0 0 0 2.956349637772753 24.929155219028946 2.956349637772753 39.15423722065669 0 1 1.3010299956639813 0 0 [H{I|L}]{[QN]|[E{I|L}]|[KN]}[HV]YH{I|L} 3.3765 - 89 NaN NaN 141673.3 NaN 7481 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10202 50.071 NaN 182280 35 0 25004 0.261 + 24795 RYPDRITLI 9 55 573.8350956172454 1145.6556383012908 2 573.8350219726562 MULTI HCD FTMS 0 0 0 10200 91953.5859375 0.04355824328923677 16 -0.45346832275390625 2 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 8.155526934196011 0.2891920862272901 2 RY{I|L}V 4 6 22.652 0 0 1.9772 0 0 0 611.3312471979124 611.3312471979124 11.854640871443749 0 0 0 0 0 0 0 0 RY{I|L}V 1.9772 - 36 + NaN NaN 120049.1 NaN 7482 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10203 50.075 NaN 255830 35 0 22649 0.261 + 30070 VFTKSPYQEF 10 62 623.3109520678945 1244.607351202589 2 623.3106689453125 MULTI HCD FTMS 0 0 0 10200 100622.2265625 0.681845614251305 -3 0.0821533203125 3 Unmodified _VFTKSPYQEF_ ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF 81.92315094803507 0.0034574604037367986 2 [{M(Oxidation (M))|F}V]TKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE{M(Oxidation (M))|F} 10 0 + 74.351 0 0 5.9739 5.9739 87.836 0 0 0 5.764837301042718 66.39227381381401 5.764837301042718 9.164539485499262 0 2.7302046884880937 0 1.6694451763165201 0 + + [{M(Oxidation (M))|F}V]TKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TKQDD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TKQDDV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TK[AG]DD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TK[AG]DDV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[KT][{M(Oxidation (M))|F}V]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QE{M(Oxidation (M))|F} 5.9739;5.2375;3.6204;3.6204;2.884;2.884;2.2994 +;-;-;-;-;-;- + 177 NaN NaN 127564.9 NaN 7483 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10204 50.078 NaN 162980 35 0 13252 0.261 + 12908 KYGIVLKEF 9 65 548.8236007807063 1095.6326486282126 2 548.8234252929688 MULTI HCD FTMS 0 0 0 10200 49919.42578125 0.4990893710618628 -1 0.02625274658203125 4 Unmodified _KYGIVLKEF_ ENSG00000125651|ENST00000394456|GTF2F1 38.61474834105838 0.07170385841135779 2 [YK]{[VA]|[{I|L}G]}V{I|L}KE{M(Oxidation (M))|F} 9 0 + 46.678 0 0 4.2604 4.2604 82.962 0 0 0 4.070677831939307 21.901596699261603 4.070677831939307 3.974315640635595 0 1.7302046884880937 0 0 0.3054621874040891 + + [YK]{[VA]|[{I|L}G]}V{I|L}KE{M(Oxidation (M))|F};[YK]{[VA]|[{I|L}G]}V{I|L}EK{M(Oxidation (M))|F};[K{I|L}][YG]V{I|L}KE{M(Oxidation (M))|F};[K{I|L}][YG]V{I|L}EK{M(Oxidation (M))|F} 4.2604;3.8976;3.3914;3.0287 +;-;-;- + 104 NaN NaN 117677.7 NaN 7484 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10205 50.082 NaN 113970 35 0 22063 0.261 + -1 MFTRFNEEI 9 45 601.7791368793294 1201.5437208254586 2 601.7794799804688 MULTI HCD FTMS 0 0 0 10200 61568.07421875 0.27491776586606326 28 -0.78411865234375 5 Oxidation (M) _M(Oxidation (M))FTRFNEEI_ REV__tr|U7T136|U7T136_FUSNULargeribosomalsubunitproteinuL1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplAPE=3SV=1 11.494710602746466 0.2610445893512368 2 VE{I|L} 3 -1 30.445 0 0 2.5338 0 0 842.3362904279312 0 842.3362904279312 0 28.455612550363796 0 0 0 0.4247425010840047 0 0 0 VE{I|L} 2.5338 - 27 NaN NaN 96479.1 NaN 7485 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10206 50.085 NaN 143260 35 0 7768.1 0.263 + 24678 RYLSPKYIKMF 11 48 482.60400107569274 1444.7901738272783 3 482.6040344238281 MULTI HCD FTMS 0 0 0 10200 38677.51953125 0.07943906330911721 14 -0.3975677490234375 6 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 31.461819360018414 0.19193863146671417 2 KM{M(Oxidation (M))|F} 3 8 26.159 0 0 1.8106 0 0 1020.575679053644 0 1020.575679053644 0 20.674100046527357 0 0 0 0.9247425010840047 0 0 0 + KM{M(Oxidation (M))|F} 1.8106 + + 21 + NaN NaN 104037.5 NaN 7486 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10207 50.088 NaN 204280 35 0 21977 0.261 + 16363 LSAVDVNN 8 66 416.2128476541696 NaN 0 416.2270202636719 PEAK HCD FTMS 0 0 0 10200 5079.54833984375 0.5554364608706953 3 -0.0853424072265625 7 Unmodified _LSAVDVNN_ REV__ENSG00000178026|ENST00000318753|LRRC75B;REV__ENST00000446942.5_1_22:24981856-24984799:-|nuORF;REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF 4.3292370932331545 0.38822285293237185 2 K 1 -1 3.9794 0 0 0.47921 0 0 200.1112899354892 499.18308435611567 699.2943742916049 0 0 0 0 0 0 0 0 0 K 0.47921 - 11 + NaN NaN 110834.5 NaN 7487 2718 10200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10209 50.093 NaN 1517400 35 0 252940 0.327 -1 0 65 500.2536018285801 998.4926507239602 2 500.2537536621094 MULTI HCD FTMS 0 0 0 10208 943896.875 0.6165370997153593 3 -0.08535003662109375 1 NaN NaN 2 STQEPE{I|L} 7 -1 72.4 0 0 7.251 0 0 196.120897361525 0 196.120897361525 0 32.60167911865537 0 0 0 1.8494850021680094 0 1.4119543704721593 0.4247425010840047 STQEPE{I|L} 7.251 - 984 NaN NaN 310965.2 NaN 7488 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10210 50.098 NaN 1487700 35 0 253880 0.261 + 9341 HPSDIEVDL 9 92 512.7508924728904 1023.4872320125809 2 512.7508544921875 MULTI HCD FTMS 0 0 0 10208 731539.75 0.4346501631372075 -3 0.0820465087890625 2 Unmodified _HPSDIEVDL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 78.14939416004806 0.006451203201226903 2 {NN|[MP]|[D{I|L}]|[EV]}P[HS]EVD{I|L} 9 4 + 70.274 0 0 6.8662 6.8662 91.441 0 0 0 9.07171590858809 42.36475363689834 9.07171590858809 11.918154769883792 0 1.5 1.3979400086720375 1.1964215256439001 0.28872548999643577 {NN|[MP]|[D{I|L}]|[EV]}P[HS]EVD{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[HS]EVEV;{NN|[MP]|[D{I|L}]|[EV]}P[HS]E{I|L}DV;[{I|L}P]D[HS]EVD{I|L};{NN|[MP]|[D{I|L}]|[EV]}D[H{I|L}][PS]D{I|L};[{I|L}P]D[HS]EVEV;[DV]E[H{I|L}][PS]D{I|L};[{I|L}P]D[HS]E{I|L}DV;{NN|[MP]|[D{I|L}]|[EV]}D[H{I|L}][PS]EV;[DV]E[H{I|L}][PS]EV 6.8662;5.7017;4.8885;4.5356;3.6353;3.3711;3.116;2.558;2.4708;1.9516 -;-;-;-;-;-;-;-;-;- 926 NaN NaN 313014.4 NaN 7489 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10211 50.101 NaN 537350 35 0 58581 0.261 + 22331 QPLHEEIAL 9 56 525.2848737047641 1048.555194476328 2 525.2849731445312 MULTI HCD FTMS 0 0 0 10208 183350.34375 0.569673340450353 -1 0.02625274658203125 3 Unmodified _QPLHEEIAL_ ENSG00000142733|ENST00000357582|MAP3K6;ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442|ENST00000359015|MAP3K5;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15 54.773552608820026 0.024892918755467567 2 E{M(Oxidation (M))|F}{I|L}A{I|L} 5 5 37.268 0 0 3.5542 0 0 457.24516493965 0 457.24516493965 0 29.30909368620867 0 0 0 1 0 1.274227503252014 0 E{M(Oxidation (M))|F}{I|L}A{I|L} 3.5542 - 74 NaN NaN 154123.4 NaN 7490 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10212 50.105 NaN 284070 35 0 40882 0.261 + 15260 LPAAGVGDMVM 11 66 546.7569669014916 1091.4993808697832 2 546.7572021484375 MULTI HCD FTMS 0 0 0 10208 126313.5859375 0.19574844758577697 28 -0.7907676696777344 4 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 103.74828524460852 0.021254478580558435 2 [{I|L}A]PAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 11 2 + 88.35 0 0 8.0944 8.0944 90.922 0 0 0 15.8559218607937 61.65765501679775 15.8559218607937 8.080923170097833 0 3.385151878060192 1.3010299956639813 0.75 0 [{I|L}A]PAGVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{I|L}A]PQVGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.0944;7.354 -;- 423 NaN NaN 130603.4 NaN 7491 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10213 50.108 NaN 341130 35 0 26539 0.261 + 22707 QYAPSTAQF 9 76 506.7401473492583 1011.4657417653166 2 506.7400817871094 MULTI HCD FTMS 0 0 0 10208 126856.7734375 1 0 0 5 Unmodified _QYAPSTAQF_ ENSG00000122515|ENST00000309315|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 72.96794272382148 0.008127836904478181 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[PS]TAQ{M(Oxidation (M))|F} 9 2 + 56.463 0 0 5.5823 5.5823 84.048 0 0 0 0.45757490560674796 41.760183716006374 0.45757490560674796 1.8052345079578913 0 1.9247425010840047 0 1.4361818737241734 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[PS]TAQ{M(Oxidation (M))|F};[QA]Y[PS]TAQ{M(Oxidation (M))|F};[YQ]A[PS]TAQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S[PS]TA[AG]{M(Oxidation (M))|F};[QA]Y[PS]TA[AG]{M(Oxidation (M))|F};[YQ]A[PS]TA[AG]{M(Oxidation (M))|F};[{I|L}P][YG][NS]SQ{M(Oxidation (M))|F};[DP]R[YT][DV]{M(Oxidation (M))|F} 5.5823;5.4038;5.1844;4.6719;4.4934;4.2741;3.0921;0.54007 -;-;+;-;-;-;-;- + 439 NaN NaN 138228.7 NaN 7492 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10214 50.111 NaN 320830 35 0 32580 0.261 -1 IMQYLKEN 8 84 527.7666792903734 1053.5188056475467 2 527.7698974609375 MULTI HCD FTMS 0 0 0 10208 47651.58984375 0.12345102388958303 20 -0.56512451171875 6 Oxidation (M) _IM(Oxidation (M))QYLKEN_ ENSG00000122692|ENST00000397149|SMU1 24.67388899826682 0.4122521268485776 2 {I|L}MSNG{I|L} 6 -1 33.824 0 0 3.2105 0 0 420.21257302306793 0 420.21257302306793 0 26.912450368561593 0 0 0 0.6989700043360187 0 0.25 0 {I|L}MSNG{I|L} 3.2105 - 169 NaN NaN 135606.3 NaN 7493 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10215 50.114 NaN 196310 35 0 25007 0.261 + 4224 EVCVFFVF 8 51 495.24544820500654 988.4763434768131 2 495.24560546875 MULTI HCD FTMS 0 0 0 10208 49843.74609375 0.6466806023982324 -2 0.0525054931640625 7 Unmodified _EVCVFFVF_ REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF 19.438996006549623 0.45076845602799126 2 V{M(Oxidation (M))|F} 2 -1 28.271 0 0 2.8601 0 0 724.3291094453663 0 724.3291094453663 0 6.75673273619914 0 0 0 0.8807196863200843 0 0 0 V{M(Oxidation (M))|F} 2.8601 + + 130 + NaN NaN 115426.1 NaN 7494 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10216 50.118 NaN 160930 35 0 15257 0.261 + 34589 YPNKYESII 9 45 563.7925696615775 1125.570586389955 2 563.7926635742188 MULTI HCD FTMS 0 0 0 10208 53206.71484375 0.4322243116943186 -4 0.10840606689453125 8 Unmodified _YPNKYESII_ AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1 15.248480904072842 0.22861284681709862 2 S{I|L}{I|L} 3 6 30.802 0 0 2.7366 0 0 794.3585306950984 0 794.3585306950984 0 15.853481135844874 0 0 0 0 0 0.7614393726401688 0 + S{I|L}{I|L} 2.7366 + + 9 NaN NaN 106668.2 NaN 7495 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10217 50.121 NaN 145760 35 0 10342 0.261 -1 MPMQDIKMIL 10 46 634.3084216141315 1266.6022902950629 2 634.8114624023438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.5288652416199255 0.4513317009562028 2 KK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 5 -1 21.976 0 0 1.7351 0 0 619.182909080275 0 619.182909080275 0 18.877268672201453 0 0 0 0.3252574989159953 0 0 0 KK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.7351 - 9 NaN NaN 111372 NaN 7496 2719 10208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10219 50.126 NaN 341450 35 0 43512 0.327 + 11098 IYHTGTFAQI 10 68 575.7982777218447 1149.5820025104892 2 575.79833984375 MULTI HCD FTMS 0 0 0 10218 135821.75 0.8059803152807707 -1 0.032833099365234375 1 Unmodified _IYHTGTFAQI_ ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF;nc|ENSG00000196365|P36776-2|LONP1 66.45667989310934 0.021783857413937163 2 N[W{I|L}][YK]DAQ{I|L} 9 7 + 50.396 0 0 4.3839 4.3839 83.499 0 0 0 3.5784094103974695 4.916440611282624 3.5784094103974695 4.916440611282624 0 1.8494850021680094 0 0 1.6549471895720984 N[W{I|L}][YK]DAQ{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]{M(Oxidation (M))|F}AQ{I|L};{[QN]|[E{I|L}]|[KN]}HH[R{M(Oxidation (M))|F}]AQ{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YQ{I|L}Q{I|L};{[QN]|[E{I|L}]|[KN]}HH[EP]{I|L}Y{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQ{I|L}Y{I|L};{[QN]|[E{I|L}]|[KN]}HH[EP]Y{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YQQ{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQY{I|L}{I|L} 4.3839;3.9562;3.5412;2.512;1.6211;1.4679;1.2749;1.2033;1.1217 -;-;-;-;-;-;-;-;- 206 + NaN NaN 132562.4 NaN 7497 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10220 50.13 NaN 366760 35 0 144280 0.264 + 7194 FSLHPGQPAYF 11 51 421.8767607381047 1262.608452814514 3 421.87701416015625 MULTI HCD FTMS 0 0 0 10218 88847.78125 0.0783218960454719 11 -0.31884765625 2 Unmodified _FSLHPGQPAYF_ REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF 9.243775137331637 0.3765410959215665 2 RY{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.8669 0 0 778.36235243965 0 778.36235243965 0 32.976102833988286 0 0 0 1 0 0 0 RY{M(Oxidation (M))|F} 2.8669 - 17 NaN NaN 137563.7 NaN 7498 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10221 50.134 NaN 400050 35 0 28248 0.261 + 19703 NYADQISRL 9 79 540.2776049294713 1078.5406569257425 2 540.2771606445312 MULTI HCD FTMS 0 0 0 10218 82885.296875 0.659927591150505 2 -0.052516937255859375 3 Unmodified _NYADQISRL_ ENSG00000008294|ENST00000262013|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-2|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3 57.107585691075435 0.021627766313179933 2 [YN]ADQ{I|L}SR{I|L} 9 0 + 72.686 0 0 6.7393 6.7393 89.783 0 0 0 33.313018396694574 9.009461452434238 9.009461452434238 9.208187539523749 0 2.4604093769761874 2 0 0 + + [YN]ADQ{I|L}SR{I|L};[YN]AD[AG]{I|L}SR{I|L};[YN]WQ{I|L}S[VG]{I|L};[YN]AKE{[DA]|[EG]}R{I|L};[YN]AKEW[VG]{I|L};[YN]AK{I|L}EV{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SDQ{I|L}SR{I|L};[YN]AKE{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]WQ{I|L}KD{I|L};[YN][HV]{[YD]|[{M(Oxidation (M))|F}M]}R{I|L} 6.7393;5.8855;5.6747;5.1904;5.1904;4.4436;3.9329;3.8854;3.8326;3.4617 +;-;-;-;-;-;-;-;-;- + 848 + NaN NaN 142958.4 NaN 7499 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10222 50.137 NaN 269890 35 0 44716 0.261 + 30558 VNKTCAYMM 9 52 530.7352594417049 1059.4559659502097 2 530.7357177734375 MULTI HCD FTMS 0 0 0 10218 50701.43359375 0.5785149925066884 4 -0.10833358764648438 4 Unmodified _VNKTCAYMM_ REV__ENSG00000172869|ENST00000539542|DMXL1;REV__nc|ENSG00000172869|Q9Y485|DMXL1 2.0597508629832335 0.3354026079994024 2 [DV]AD 4 -1 16.198 0 0 1.5289 0 0 0 656.2688263480997 656.2688263480997 5.740312677277187 0 0 0 0 0 0 0 0 [DV]AD 1.5289 - 21 + NaN NaN 122145.9 NaN 7500 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10223 50.141 NaN 67454 35 0 10578 0.261 -1 DKCLSPDL 8 39 474.22877155517176 946.4429901771435 2 474.2286682128906 MULTI HCD FTMS 0 0 0 10218 26977.3828125 0.4517463429184242 5 -0.13460540771484375 5 Carbamidomethyl (C) _DKC(Carbamidomethyl (C))LSPDL_ ENSG00000126603|ENST00000433375|GLIS2 4.75600775471527 0.5349361699807423 2 E{I|L} 2 -1 19.464 0 0 2.0565 0 0 686.305467674025 0 686.305467674025 0 19.463950151760656 0 0 0 0 0 0 0 E{I|L} 2.0565 - 3 NaN NaN 89027.5 NaN 7501 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10224 50.144 NaN 191570 35 0 22637 0.261 + 4806 EYVEKFYRI 9 58 416.2203976508939 1245.6393635528818 3 416.2206726074219 MULTI HCD FTMS 0 0 0 10218 14451.9384765625 0.005694362303792488 50 -1.3254203796386719 6 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 3.5870582119611467 0.32382448100160255 2 EV[C(Carbamidomethyl (C))N] 4 7 16.198 0 0 1.3004 0 0 725.4216825724087 0 725.4216825724087 0 1.593793813122062 0 0 0 0 0 0 0 EV[C(Carbamidomethyl (C))N] 1.3004 - 39 NaN NaN 112740.6 NaN 7502 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10225 50.147 NaN 120410 35 0 5372.7 0.261 + -1 IFLSDDDC 8 33 492.7032772325933 NaN 0 492.7031555175781 PEAK HCD FTMS 0 0 0 10218 6410.39453125 0.13246273867227387 -17 0.4622764587402344 7 Carbamidomethyl (C) _IFLSDDDC(Carbamidomethyl (C))_ REV__ENST00000492742.5_1_21:44283680-44299172:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98482.1 NaN 7503 2720 10218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10227 50.152 NaN 3926000 35 0 509440 0.327 + 24848 RYPTSIASL 9 88 504.27959770153905 1006.5446424698781 2 504.27978515625 MULTI HCD FTMS 0 0 0 10226 2647150.5 0.6594960411310797 4 -0.10834884643554688 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 106.94017166704063 0.003441928997083001 2 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 9 6 79.816 0 0 7.9297 0 0 0 128.0722411496594 128.0722411496594 59.176127934005436 0 0 0 0 1.3494850021680094 1.5228787452803376 2.221848749616356 0 {[TV]|[{I|L}S]}A[{M(Oxidation (M))|F}V]S{I|L}AS 7.9297 - 2070 NaN NaN 616379.1 NaN 7504 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10228 50.157 NaN 2627800 35 0 308950 0.261 + 23130 RFEEAHFTF 9 98 592.2801715205328 1182.5457901078655 2 592.2804565429688 MULTI HCD FTMS 0 0 0 10226 1121582.75 0.6570536335746331 -2 0.05908966064453125 2 Unmodified _RFEEAHFTF_ ENSG00000131788|ENST00000393045|PIAS3;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENST00000498436.2_1_1:145578572-145580415:+|nuORF 106.94017166704063 0.003441928997083001 2 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 61.403 0 0 5.1925 5.1925 62.588 0 0 0 0 8.89075625191822 0 0 0 1.5044321917401078 0 0.805462187404089 0.5451140161145328 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]EEAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]QQQH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}AE{[RE]|[WV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][AG]QQH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAERE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAEER{M(Oxidation (M))|F};[HA]{M(Oxidation (M))|F}E{[RE]|[WV]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HA{M(Oxidation (M))|F}REE;{M(Oxidation (M))|F}{M(Oxidation (M))|F}REAH{M(Oxidation (M))|F}{[ET]|[MV]} 5.1925;5.1925;4.7061;4.0194;3.9274;3.8632;3.6086;3.5918;3.5668;3.5233 -;+;-;-;-;-;-;-;-;- + 6702 NaN NaN 478624.5 NaN 7505 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10229 50.16 NaN 641330 35 0 152690 0.261 + 8580 HAVIQEYML 9 69 560.2785125109162 1118.5424720886324 2 560.2788696289062 MULTI HCD FTMS 0 0 0 10226 260406.78125 0.7500719871412378 2 -0.05254364013671875 3 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 62.57269311338072 0.013982455292112035 2 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 64.843 0 0 5.7971 5.7971 92.535 0 0 0 5.6424927368725974 45.37909996297415 5.6424927368725974 41.397065965837 0 2.1677353201839438 0 0.3494850021680094 0.3807196863200844 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};NP{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[C(Carbamidomethyl (C))E]|[WC]}{M(Oxidation (M))|F}{I|L} 5.7971;2.0961 +;- + 219 NaN NaN 198064 NaN 7506 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10230 50.164 NaN 272900 35 0 15184 0.261 -1 YYVAGFSILC 10 58 596.7895994844229 1191.5646460356456 2 597.7787475585938 MULTI HCD FTMS 0 0 0 10226 7102.03515625 0.40468643785226854 2 -0.05254364013671875 4 Carbamidomethyl (C) _YYVAGFSILC(Carbamidomethyl (C))_ ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9 16.942295170755138 0.35263950412107176 2 YY{M(Oxidation (M))|F}[W{I|L}]Q 6 -1 28.161 0 0 2.3633 0 0 0 288.1740141754846 288.1740141754846 8.608018480247779 0 0 0 0 0 2 0 0 YY{M(Oxidation (M))|F}[W{I|L}]Q 2.3633 - 76 NaN NaN 134978.3 NaN 7507 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10231 50.167 NaN 495660 35 0 89134 0.261 + 31771 VYLPTHTSL 9 59 515.7817698847421 1029.548986836284 2 515.781982421875 MULTI HCD FTMS 0 0 0 10226 170956.75 0.7602802602811983 -1 0.026256561279296875 5 Unmodified _VYLPTHTSL_ ENSG00000007944|ENST00000356840|MYLIP 36.04419817259434 0.08350412372117409 2 VY{I|L} 3 6 48.416 0 0 4.7027 0 0 0 651.3108219129198 651.3108219129198 41.42667503568731 0 0 0 0 1 1.6989700043360187 0 0 + VY{I|L} 4.7027 + + 62 + NaN NaN 153360.5 NaN 7508 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10232 50.17 NaN 89511 35 0 9535.9 0.261 + 24408 RYKGPGFEYF 10 43 632.3115346331087 1262.6085163330174 2 632.3121337890625 MULTI HCD FTMS 0 0 0 10226 53937.921875 0.09391215158238561 12 -0.3418617248535156 6 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 21.799462835604743 0.30720719660089946 2 EY{M(Oxidation (M))|F} 3 7 39.253 0 0 3.1088 0 0 805.4258666725317 0 805.4258666725317 0 23.79493455131808 0 0 0 0.5 0 0.805462187404089 0 + EY{M(Oxidation (M))|F} 3.1088 + + 34 NaN NaN 99491.5 NaN 7509 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10233 50.174 NaN 75157 35 0 5481.5 0.261 + 9284 HPNIIYVYF 9 43 583.3061297683101 NaN 0 583.3058471679688 PEAK HCD FTMS 0 0 0 10226 18340.90234375 0.45713784164335025 1 -0.0262603759765625 7 Unmodified _HPNIIYVYF_ REV__ENST00000488325.5_1_6:32780676-32780880:-|nuORF 1.844237919475145 0.28630992268396543 2 V 1 -1 6.9897 0 0 0.60018 0 0 137.06445572627018 925.4194429986936 1062.4838987249639 0 0 0 0 0 0 0 0 0 V 0.60018 + + 2 + NaN NaN 88549 NaN 7510 2721 10226 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10235 50.179 NaN 781110 35 0 115420 0.327 + 26355 SSIDSEPAL 9 57 459.7244561094336 917.4343592856673 2 459.7244567871094 MULTI HCD FTMS 0 0 0 10234 443315.8125 0.8211473796298161 2 -0.055816650390625 1 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 141.82661023413823 1.746659319327287E-05 2 {[CA]|SS}{I|L}DSEPA{I|L} 9 0 + 87.819 0 0 9.5722 9.5722 97.714 0 0 0 7.900217704352457 62.93666126345022 7.900217704352457 32.671182054907305 0 2.943672679568534 0 1.8539171939081172 0 + + {[CA]|SS}{I|L}DSEPA{I|L};{[CA]|SS}{I|L}DTDPA{I|L};[PA]TDSE[VS]{I|L};[PA]TDDT[VS]{I|L};{[CA]|SS}{I|L}D{I|L}[EP]{[SA]|[TG]} 9.5722;6.0111;3.5274;3.1993;1.7468 +;-;-;-;- + 230 NaN NaN 205301.7 NaN 7511 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10236 50.183 NaN 417520 35 0 54167 0.261 -1 EMEGCAWTLE 10 75 613.248779296875 NaN 0 613.2631225585938 PEAK HCD FTMS 0 0 0 10234 11409.6513671875 0.9381053512269618 1 -0.02628326416015625 2 Carbamidomethyl (C) _EMEGC(Carbamidomethyl (C))AWTLE_ ENSG00000177432|ENST00000323061|NAP1L5 14.838274106304384 0.3224471714378502 2 VPEG{M(Oxidation (M))|F}E{I|L}H 8 -1 61.407 0 0 5.015 0 0 63.969013582358066 249.05439172916252 313.0234053115206 0 0 0 0 0 0 0 1.9916440611282624 0 VPEG{M(Oxidation (M))|F}E{I|L}H 5.015 - 1152 + NaN NaN 143077.6 NaN 7512 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10237 50.187 NaN 531480 35 0 139410 0.261 + 24683 RYLTGAWRL 9 85 568.3220609463524 1134.6295689595047 2 568.3220825195312 MULTI HCD FTMS 0 0 0 10234 213711.046875 0.6797952866689417 -2 0.052516937255859375 3 Unmodified _RYLTGAWRL_ ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant;ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5 21.590151480376914 0.17382222009858564 2 {I|L}RYT 4 7 38.15 0 0 3.3623 0 0 0 598.3094576471311 598.3094576471311 17.12359876933563 0 0 0 0 0.4247425010840047 0 0.8252574989159953 0.4247425010840047 {I|L}RYT 3.3623 - 430 + NaN NaN 164742.1 NaN 7513 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10238 50.19 NaN 244360 35 0 13274 0.261 -1 YPDRIMNTF 9 60 586.7735938013249 1171.5326346694496 2 586.7749633789062 MULTI HCD FTMS 0 0 0 10234 97970.359375 0.029007238348275222 70 -1.8797721862792969 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 35.079672537005266 0.08793183672117794 2 {[QS]|[NT]}{M(Oxidation (M))|F}[PG]K{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 10 -1 + 40.934 0 0 3.4941 3.4941 83.446 0 0 0 0.5014445271442725 5.985994592184554 0.5014445271442725 7.144104213048614 0 1 0 0 0 {[QS]|[NT]}{M(Oxidation (M))|F}[PG]K{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}[PG]K{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};YPDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[PG]NT{M(Oxidation (M))|F} 3.4941;2.8843;2.7118;2.0983;1.7696 -;+;-;-;- + 284 NaN NaN 125807 NaN 7514 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10239 50.193 NaN 214150 35 0 23744 0.261 + 27134 SYMLVNENRF 10 51 644.8031837003241 1287.591814467448 2 644.8032836914062 MULTI HCD FTMS 0 0 0 10234 96870.8671875 0.8407614043131679 -3 0.08535003662109375 5 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 68.75988807550267 0.019054759910196034 2 G{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 9 2 72.572 0 0 5.6362 0 0 193.07221401761586 0 193.07221401761586 0 51.60273743745762 0 0 0 2.5356668758921828 0 0 0.6747425010840047 G{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 5.6362 - 649 + NaN NaN 118420.3 NaN 7515 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10240 50.197 NaN 158650 35 0 13452 0.264 + 26224 SPTKLDVTL 9 70 487.28181818835446 972.549083443509 2 487.28173828125 MULTI HCD FTMS 0 0 0 10234 68500.4296875 0.3798534991184751 4 -0.12160491943359375 6 Unmodified _SPTKLDVTL_ ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 26.268140514670165 0.13340543277302316 2 VT{I|L} 3 6 32.435 0 0 3.3351 0 0 641.3378163068375 0 641.3378163068375 0 24.578343878162343 0 0 0 0.5 0 0.4247425010840047 0 + VT{I|L} 3.3351 + + 21 NaN NaN 110471.4 NaN 7516 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10241 50.2 NaN 268630 35 0 14606 0.261 + 19704 NYADQISRL 9 74 540.2776049294713 1078.5406569257425 2 540.2723999023438 MULTI HCD FTMS 0 0 0 10234 57680.46875 0.4592483134376115 3 -0.08208847045898438 7 Unmodified _NYADQISRL_ ENSG00000008294|ENST00000262013|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-2|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3 42.312485326615175 0.05472917415473307 2 [YN]ADQ{I|L}SR{I|L} 9 0 + 53.84 0 0 4.9919 4.9919 86.939 0 0 0 29.670846891215277 7.816658315635081 7.816658315635081 9.208187539523749 0 1.6549471895720984 1.6989700043360187 0 0 + + [YN]ADQ{I|L}SR{I|L};[YN]AD[AG]{I|L}SR{I|L};[YN]AKK[DN]N{I|L};[YN]AKK{NN|[MP]|[D{I|L}]|[EV]}D{I|L};[YN]A[{I|L}T][DN]R{I|L};[YN]A[{I|L}T][RD]N{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SDQ{I|L}SR{I|L};[YN]A[{I|L}T][RN]D{I|L};[YN]WQ{I|L}KD{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD[AG]{I|L}SR{I|L} 4.9919;4.1381;2.9931;2.7625;2.4545;2.4297;2.305;2.1991;2.1839;1.4512 +;-;-;-;-;-;-;-;-;- + 235 + NaN NaN 131764.9 NaN 7517 2722 10234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10243 50.205 NaN 319580 35 0 37630 0.327 + 362 AHFRNLQPGS 10 68 563.7925696615775 1125.570586389955 2 564.7771606445312 MULTI HCD FTMS 0 0 0 10242 36441.94921875 1 0 0 1 Unmodified _AHFRNLQPGS_ ENST00000354249.8_2_16:2030682-2031466:-|nuORF;ENST00000567471.1_1_16:2030682-2034179:-|nuORF 6.723162845929126 0.4397169348982109 2 [HA]{M(Oxidation (M))|F}VE{I|L}HE 8 6 34.884 0 0 3.0992 0 0 0 160.0895670047776 160.0895670047776 3.390332893386173 0 0 0 0 0 0 0.6747425010840047 0 [HA]{M(Oxidation (M))|F}VE{I|L}HE 3.0992 - 336 NaN NaN 122498.1 NaN 7518 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10244 50.209 NaN 218520 35 0 26531 0.261 + 7233 FSSTQLSFF 9 62 532.258357495719 1062.502162058238 2 532.2581176757812 MULTI HCD FTMS 0 0 0 10242 74925.265625 0.7321870912172216 1 -0.02953338623046875 2 Unmodified _FSSTQLSFF_ sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1 47.748688679222035 0.03472022231463587 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[WR]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 4 + 73.778 0 0 6.9438 6.9438 92.932 0 0 0 23.979400086720375 66.31395887298318 23.979400086720375 19.03335040558744 0 1.6549471895720984 1.6989700043360187 1.2614393726401687 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[WR]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}T]S{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[DG][WR]S{[ES]|[DT]|[{I|L}C]} 6.9438;5.1524;1.8511 -;-;- 95 NaN NaN 115881.3 NaN 7519 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10245 50.213 NaN 372190 35 0 38776 0.261 + 10864 IVQGPDPNL 9 64 476.758648700512 951.5027444678241 2 476.7585754394531 MULTI HCD FTMS 0 0 0 10242 183543.609375 0.3426263525333509 -4 0.11163330078125 3 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 106.94017166704063 0.003441928997083001 2 [{I|L}V]QGPD[NP]{I|L} 9 0 + 71.423 0 0 7.5064 7.5064 92.735 0 0 0 24.13734275855269 56.998643667695745 24.13734275855269 12.26280941356464 0 2.25 1.6989700043360187 0 0.6861818737241735 + + [{I|L}V]QGPD[NP]{I|L};[{I|L}V][AG]GPD[NP]{I|L};[{I|L}V]Q[HD]EV{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPD[NP]{I|L};[{I|L}V][AG][HD]EV{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[HD]EV{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[ET]|[MV]}[YT]V{I|L};[NP]{[DA]|[EG]}PVQV{I|L};[NP]{[DA]|[EG]}PN{I|L}V{I|L} 7.5064;6.2176;5.1399;4.6939;3.399;2.3274;0.94735;0.6403;0.42577 +;-;-;-;-;-;-;-;- + 342 NaN NaN 139510.3 NaN 7520 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10246 50.216 NaN 259750 35 0 26127 0.261 + 19063 NEFPDELEI 9 63 553.2564575717765 1104.498362210353 2 553.2564086914062 MULTI HCD FTMS 0 0 0 10242 109293.71875 0.9274244546550262 -2 0.05254364013671875 4 Unmodified _NEFPDELEI_ REV__tr|U7SSC0|U7SSC0_FUSNUChaperoninGroELOS=FusobacteriumnucleatumCTI-5OX=1316586GN=groELPE=3SV=1 9.38312468134398 0.279288223203164 2 [WH]{I|L}{[ET]|[MV]}GH[EP] 9 -1 + 24.683 0 0 2.2347 2.2347 87.384 0 0 0 2.242559824065541 7.146738123465397 2.242559824065541 20.757207139381183 0 0 1.3010299956639813 0 0 [WH]{I|L}{[ET]|[MV]}GH[EP];{[HG]|PP}[EP][{M(Oxidation (M))|F}V]GH[EP];{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]}H{I|L} 2.2347;0.35541;0.15413 -;-;- 224 NaN NaN 121631 NaN 7521 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10247 50.219 NaN 439890 35 0 44948 0.261 + 12180 KKLLVYEAL 9 73 538.8380757997094 NaN 0 538.8270263671875 PEAK HCD FTMS 0 0 0 10242 9320.9814453125 0.9344184954592322 -1 0.02628326416015625 5 Unmodified _KKLLVYEAL_ ENSG00000176623|ENST00000406452|RMDN1;ENST00000522804.5_1_8:87497076-87500839:-|nuORF;nc|ENSG00000176623|Q96DB5-2|RMDN1;nc|ENSG00000176623|Q96DB5-3|RMDN1 3.944395688203298 0.27613285122220627 2 VHGQ 4 8 11.402 0 0 1.06 0 0 116.20200846279427 535.2381685846311 651.4401770474254 0 0 0 0 0 0 0 0 0 VHGQ 1.06 - 61 + NaN NaN 157081.4 NaN 7522 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10248 50.223 NaN 133960 35 0 23723 0.261 + -1 EDNEHCAP 8 41 486.18011514150567 970.3456773498114 2 486.1801452636719 MULTI HCD FTMS 0 0 0 10242 48904.11328125 0.534968011190037 3 -0.0953216552734375 6 Carbamidomethyl (C) _EDNEHC(Carbamidomethyl (C))AP_ REV__ENSG00000171209|ENST00000304954|CSN3 0.7936320650641473 0.540814922690045 2 {I|L}[PA] 3 -1 7.4473 0 0 0.76749 0 0 671.162188435552 0 671.162188435552 0 7.447274948966937 0 0 0 0 0 0 0 {I|L}[PA] 0.76749 - 8 + NaN NaN 117923.8 NaN 7523 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10249 50.226 NaN 104520 35 0 8683.6 0.261 + 26349 SSIDAGYEV 9 51 470.71571115908733 939.4168693849747 2 470.71551513671875 MULTI HCD FTMS 0 0 0 10242 50546.91796875 0.7093985358114383 4 -0.1216278076171875 7 Unmodified _SSIDAGYEV_ REV__ENSG00000073614|ENST00000399788|KDM5A;REV__KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;REV__nc|ENSG00000073614|P29375-2|KDM5A 10.073929032068715 0.27331982688540024 2 {[CA]|SS}{I|L}D 4 -1 19.609 0 0 2.0874 0 0 0 534.2177218072874 534.2177218072874 14.124628150806373 0 0 0 0 0.7302046884880937 0 0 0 {[CA]|SS}{I|L}D 2.0874 + + 7 + NaN NaN 98647.4 NaN 7524 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10250 50.229 NaN 339510 35 0 40900 0.261 + 28003 TFPLCSFFG 9 60 509.7394063919094 1017.4642598506189 2 509.74017333984375 MULTI HCD FTMS 0 0 0 10242 62572.82421875 1 0 0 8 Unmodified _TFPLCSFFG_ REV__ENST00000335393.8_1_19:17664253-17664490:+|nuORF 10.823927491677226 0.26684000660059787 2 T{M(Oxidation (M))|F}HAE 5 -1 46.568 0 0 4.5769 0 0 0 429.1890047662719 429.1890047662719 21.8753063169585 0 0 0 0 0.7742275032520141 0 0.3252574989159953 0 T{M(Oxidation (M))|F}HAE 4.5769 - 134 + NaN NaN 139136.4 NaN 7525 2723 10242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10252 50.234 NaN 307330 35 0 44080 0.327 -1 0 66 500.2536018285801 998.4926507239602 2 500.25347900390625 MULTI HCD FTMS 0 0 0 10251 121737.6171875 0.07951690424554052 8 -0.2301483154296875 1 NaN NaN 2 TQEPE{I|L} 6 -1 53.365 0 0 5.3445 0 0 283.1530934064469 0 283.1530934064469 0 34.11236583892361 0 0 0 1.774227503252014 0 0.3054621874040891 0.3807196863200844 TQEPE{I|L} 5.3445 - 161 NaN NaN 131273.7 NaN 7526 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10253 50.239 NaN 125700 35 0 18691 0.261 -1 0 50 424.08158051091766 NaN 0 424.08148193359375 PEAK HCD FTMS 0 0 0 10251 75626.421875 0.49939985441323426 146 -3.579608917236328 2 NaN NaN 2 Y 1 -1 6.9897 0 0 0.82606 0 0 131.81384247171837 548.2452486627561 680.0590911344746 0 0 0 0 0 0 0 0 0 Y 0.82606 - 11 + NaN NaN 109200 NaN 7527 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10254 50.242 NaN 402050 35 0 48562 0.261 + 12964 KYIEGVSDF 9 61 529.2634012843897 1056.5122496355793 2 530.2484130859375 MULTI HCD FTMS 0 0 0 10251 23066.130859375 0.3317064915819696 -4 0.10833358764648438 3 Unmodified _KYIEGVSDF_ ENSG00000197429|ENST00000396478|IPP;nc|ENSG00000197429|Q9Y573-2|IPP 20.41453444215458 0.18397929046831515 2 SD{M(Oxidation (M))|F} 3 6 28.716 0 0 2.718 0 0 689.3748938567197 0 689.3748938567197 0 10.644490976677044 0 0 0 1.1549471895720984 0 0 0 + SD{M(Oxidation (M))|F} 2.718 + + 62 + NaN NaN 150138.9 NaN 7528 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10255 50.246 NaN 132690 35 0 14641 0.261 + 23711 RQPSLFYHL 9 60 580.8140838336602 1159.6136147341203 2 580.8138427734375 MULTI HCD FTMS 0 0 0 10251 42529.6484375 0.15008882703756288 9 -0.2597846984863281 4 Unmodified _RQPSLFYHL_ ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant 8.745405648335112 0.2847203663274469 2 YH{I|L} 3 6 30.005 0 0 2.5875 0 0 728.3979543739324 0 728.3979543739324 0 19.82779677648047 0 0 0 0.3807196863200844 0 0 0 + YH{I|L} 2.5875 + + 48 NaN NaN 118679.1 NaN 7529 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10256 50.249 NaN 78188 35 0 4747.2 0.262 + 24679 RYLSPKYIKMF 11 46 482.60400107569274 1444.7901738272783 3 482.93798828125 MULTI HCD FTMS 0 0 0 10251 20306.775390625 0.04807033181504157 21 -0.5970268249511719 5 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 16.13717665003241 0.31647866253176227 2 Y{I|L}KM{M(Oxidation (M))|F} 5 6 33.94 0 0 2.3491 0 0 744.4307728498062 0 744.4307728498062 0 29.960762528683702 0 0 0 1.6237125054200234 0 0 0 + Y{I|L}KM{M(Oxidation (M))|F} 2.3491 + + 22 NaN NaN 109111.9 NaN 7530 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10257 50.252 NaN 196130 35 0 26395 0.261 + -1 KQMDCQLLLV 10 51 416.55423045061144 1246.6408619520344 3 416.5540466308594 MULTI HCD FTMS 0 0 0 10251 5970.00341796875 0.122183113313996 2 -0.06578826904296875 6 Carbamidomethyl (C) _KQMDC(Carbamidomethyl (C))QLLLV_ REV__ENSG00000116983|ENST00000372844|HPCAL4 1.9063754702782614 0.46521295622613185 2 EV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4 -1 16.198 0 0 1.2993 0 0 725.4215650120292 0 725.4215650120292 0 0.7133375178436552 0 0 0 0 0 0 0 EV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 1.2993 - 32 NaN NaN 124875.1 NaN 7531 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10258 50.256 NaN 79056 35 0 8301.9 0.261 + -1 GPGRSRVM 8 37 438.2309107442685 NaN 0 438.23065185546875 PEAK HCD FTMS 0 0 0 10251 16423.984375 0.8250145889525818 1 -0.026271820068359375 7 Oxidation (M) _GPGRSRVM(Oxidation (M))_ REV__ENSG00000187955|ENST00000297848|COL14A1;REV__nc|ENSG00000187955|Q05707-2|COL14A1;REV__nc|ENSG00000187955|Q05707-3|COL14A1 7.910154910731844 0.38822285293237185 2 V 1 -1 15.797 0 0 1.8065 0 0 610.326895249042 162.0232332818969 772.3501285309388 0 0 0 0 0 0.8807196863200843 0 0 0 V 1.8065 + + 3 + NaN NaN 96777.8 NaN 7532 2724 10251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10260 50.261 NaN 2128600 35 0 415480 0.327 + 9342 HPSDIEVDL 9 98 512.7508924728904 1023.4872320125809 2 512.7511596679688 MULTI HCD FTMS 0 0 0 10259 1315682.25 0.7817230773846919 3 -0.09877395629882812 1 Unmodified _HPSDIEVDL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 88.90359156742426 0.00455469703666567 2 {NN|[MP]|[D{I|L}]|[EV]}P[HS]EVD{I|L} 9 4 + 79.562 0 0 7.7736 7.7736 92.914 0 0 0 17.306623463673617 51.52907155488458 17.306623463673617 11.276362525516532 0 1.5 1.5228787452803376 1.7571810378154735 0.28872548999643577 {NN|[MP]|[D{I|L}]|[EV]}P[HS]EVD{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[HS]EVEV;{NN|[MP]|[D{I|L}]|[EV]}P[HS]D{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[HS]E{I|L}DV;[{I|L}P]D[HS]EVD{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[HS]D{I|L}EV;[{I|L}P]D[HS]EVEV;[{I|L}P]D[HS]D{I|L}D{I|L};[{I|L}P]D[HS]E{I|L}DV;[{I|L}P]D[HS]D{I|L}EV 7.7736;6.6718;6.1871;5.7514;5.1042;5.0854;4.0024;3.5178;3.082;2.416 -;-;-;-;-;-;-;-;-;- 923 NaN NaN 409126.4 NaN 7533 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10261 50.265 NaN 277500 35 0 28360 0.261 + 12346 KNDINVYAI 9 57 525.2848737047641 1048.555194476328 2 525.2849731445312 MULTI HCD FTMS 0 0 0 10259 113237.0703125 0.3518299381848493 5 -0.15135574340820312 2 Unmodified _KNDINVYAI_ tr|U7SRE1|U7SRE1_FUSNUYbgI/familydinuclearmetalcenterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01724PE=3SV=1 28.486842064014134 0.11819662193267319 2 A{I|L} 2 7 18.188 0 0 1.7345 0 0 846.4221146804017 0 846.4221146804017 0 4.208187539523749 0 0 0 0.5 0 0 0 + A{I|L} 1.7345 + + 31 NaN NaN 127537.3 NaN 7534 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10262 50.269 NaN 529880 35 0 125930 0.261 + 12965 KYIEGVSDF 9 65 529.2634012843897 1056.5122496355793 2 529.2636108398438 MULTI HCD FTMS 0 0 0 10259 235791.8125 0.6376377715469447 -2 0.055805206298828125 3 Unmodified _KYIEGVSDF_ ENSG00000197429|ENST00000396478|IPP;nc|ENSG00000197429|Q9Y573-2|IPP 65.47368725323818 0.010552856507075443 2 [YK]{I|L}EGVSD{M(Oxidation (M))|F} 9 0 + 72.853 0 0 6.8956 6.8956 92.798 0 0 0 3.65279269351241 54.12971259689115 3.65279269351241 18.737125054200234 0 2.6747425010840047 0 0.3252574989159953 0 + + [YK]{I|L}EGVSD{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[K{I|L}]VSD{M(Oxidation (M))|F};[YK]{I|L}{[VA]|[{I|L}G]}DSD{M(Oxidation (M))|F};[YK]{I|L}EGVG[YE];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[K{I|L}]VG[YE];[YK]{I|L}{[VA]|[{I|L}G]}DG[YE];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[VG]E[YK]{I|L} 6.8956;5.1222;4.4418;3.8894;2.116;1.4356;0.6532 +;-;-;-;-;-;- + 231 NaN NaN 166415.4 NaN 7535 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10263 50.272 NaN 362200 35 0 28709 0.261 + 239 AFDLTEQRY 9 65 571.7772973937922 1141.5400418543843 2 571.7774047851562 MULTI HCD FTMS 0 0 0 10259 189146.359375 1 0 0 4 Unmodified _AFDLTEQRY_ ENSG00000146872|ENST00000346027|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;nc|ENSG00000146872|Q86UE8|TLK2 93.16586880292088 0.00444300900000894 2 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}TEQRY 9 0 + 83.937 0 0 7.3529 7.3529 90.91 0 0 0 5.6424927368725974 13.068109453757657 5.6424927368725974 9.208187539523749 0 2.6549471895720984 0 0.7302046884880937 0.3252574989159953 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}TEQRY;{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}TE[AG]RY;{[{M(Oxidation (M))|F}D]|MM}A{I|L}TEQRY;{[{M(Oxidation (M))|F}D]|MM}A[VP]{M(Oxidation (M))|F}QRY;{[{M(Oxidation (M))|F}D]|MM}A{I|L}TE[AG]RY;{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}EEQRY;{[{M(Oxidation (M))|F}D]|MM}A[VP]{M(Oxidation (M))|F}[AG]RY;[HV]TQET{I|L}[WE];[YQ][R{M(Oxidation (M))|F}]T{I|L}D{[CP]|[EA]};[HV]TQ{M(Oxidation (M))|F}[VP]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 7.3529;6.5463;5.3595;4.8405;4.2467;3.799;3.7277;3.5265;3.521;2.8394 +;-;-;-;-;-;-;-;-;- + 463 + NaN NaN 140555 NaN 7536 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10264 50.275 NaN 539170 35 0 69113 0.261 + 20311 NYQGHFHLF 9 85 581.7750507775596 1161.5355486219191 2 581.775390625 MULTI HCD FTMS 0 0 0 10259 203935.21875 0.5477987912364644 -2 0.055805206298828125 5 Unmodified _NYQGHFHLF_ ENST00000283632.4_1_2:86968058-86968091:+|nuORF 125.62461146993168 0.0008703235425492373 2 [YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F} 9 0 + 93.928 0 0 8.0866 8.0866 88.254 0 0 0 1.6503780424059045 1.6503780424059045 1.6503780424059045 1.6503780424059045 0 2.6549471895720984 2 0 1.309894379144197 + + [YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NYQGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YN][AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NY[AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NYQGH{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];NY[AG]GH{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}];{M(Oxidation (M))|F}S[NG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NYQG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[CA]|SS}[H{I|L}];{M(Oxidation (M))|F}S{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S[NG]GH{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}] 8.0866;7.9445;7.2938;6.7861;6.7826;5.6242;4.497;3.8473;3.5041;3.3351 +;+;-;-;-;-;-;-;-;- + 956 NaN NaN 178660.2 NaN 7537 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10265 50.279 NaN 175800 35 0 14075 0.261 + 34590 YPNKYESII 9 50 563.7925696615775 1125.570586389955 2 563.7925415039062 MULTI HCD FTMS 0 0 0 10259 102472.2734375 0.8324326729124895 2 -0.06582260131835938 6 Unmodified _YPNKYESII_ AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1 19.361941925380144 0.1930734562688509 2 Y[YE]S{I|L}{I|L} 6 3 35.718 0 0 3.1734 0 0 339.18992812324376 0 339.18992812324376 0 17.759621790487685 0 0 0 0.3807196863200844 0 0.3494850021680094 0 Y[YE]S{I|L}{I|L} 3.1734 - 18 NaN NaN 122537.7 NaN 7538 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10266 50.282 NaN 106050 35 0 11556 0.261 + 30071 VFTKSPYQEF 10 49 623.3109520678945 1244.607351202589 2 623.3110961914062 MULTI HCD FTMS 0 0 0 10259 49836.36328125 0.33770576237893596 4 -0.125030517578125 7 Unmodified _VFTKSPYQEF_ ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF 14.837902256254086 0.37232328541747955 2 S[KT]{NN|[MP]|[D{I|L}]|[EV]} 5 7 14.093 0 0 1.1323 0 0 682.2956689861675 0 682.2956689861675 0 6.020599913279623 0 0 0 0.7614393726401688 0 0 0 S[KT]{NN|[MP]|[D{I|L}]|[EV]} 1.1323 - 20 NaN NaN 107932.6 NaN 7539 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10267 50.285 NaN 212920 35 0 23838 0.261 + 15261 LPAAGVGDMVM 11 59 546.7569669014916 1091.4993808697832 2 546.7568359375 MULTI HCD FTMS 0 0 0 10259 58114.4296875 0.09006006210044318 34 -0.9217300415039062 8 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 56.17704186161178 0.05605286262343611 2 ARGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 5 49.321 0 0 4.5187 0 0 281.1747035866559 0 281.1747035866559 0 38.35216068810212 0 0 0 2.2302046884880937 0 0 0 ARGD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.5187 - 105 + NaN NaN 138717.4 NaN 7540 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10268 50.289 NaN 245140 35 0 22448 0.261 + -1 YEDEFMDL 8 70 539.2063550076641 1076.3981570821281 2 539.2067260742188 MULTI HCD FTMS 0 0 0 10259 67252.9453125 0.9130401303231339 2 -0.06582260131835938 9 Oxidation (M) _YEDEFM(Oxidation (M))DL_ REV__ENSG00000038532|ENST00000409790|CLEC16A;REV__ENST00000463459.1_1_16:11118735-11142283:+|nuORF;REV__ENST00000463896.5_1_16:11136052-11141289:+|nuORF;REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A 4.75600775471527 0.5349361699807423 2 VD{I|L} 3 -1 29.922 0 0 2.7798 0 0 731.2089039992608 0 731.2089039992608 0 22.84318117920506 0 0 0 0.8494850021680094 0 0 0 VD{I|L} 2.7798 - 58 NaN NaN 122547.4 NaN 7541 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10269 50.292 NaN 153970 35 0 23195 0.261 + 16663 LWHYYVLR 8 45 575.3117686745474 1148.6089844158946 2 575.7982788085938 MULTI HCD FTMS 0 0 0 10259 28905.84765625 0.9958158331403913 -2 0.055805206298828125 10 Unmodified _LWHYYVLR_ REV__ENSG00000158156|ENST00000373884|XKR8 5.760428011301431 0.5334459684533844 2 QA{M(Oxidation (M))|F}E 4 -1 13.448 0 0 1.1708 0 0 130.11893255571812 540.2551973932249 670.3741299489429 0 0 0 0 0 0 0 0.3807196863200844 0 QA{M(Oxidation (M))|F}E 1.1708 - 15 + NaN NaN 109082.9 NaN 7542 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10270 50.295 NaN 141250 35 0 7699.5 0.261 + 26251 SQFINEQF 8 55 506.7401473492583 1011.4657417653166 2 506.74090576171875 MULTI HCD FTMS 0 0 0 10259 14273.8076171875 0.11251908140498262 6 -0.18424224853515625 11 Unmodified _SQFINEQF_ tr|U7SM87|U7SM87_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01864PE=4SV=1 10.073929032068715 0.5196730168178844 2 {M(Oxidation (M))|F} 1 7 18.852 0 0 1.8638 0 0 846.3862414985182 0 846.3862414985182 0 12.129843661361406 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.8638 + + 17 + NaN NaN 115136.6 NaN 7543 2725 10259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10272 50.3 NaN 1208900 35 0 166780 0.327 + 24849 RYPTSIASL 9 78 504.27959770153905 1006.5446424698781 2 504.27972412109375 MULTI HCD FTMS 0 0 0 10271 697867.375 0.17386271428354325 9 -0.24991989135742188 1 Unmodified _RYPTSIASL_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 89.40071534611396 0.0045416704840156395 2 [YR][TP]S{I|L}AS{I|L} 9 0 + 73.963 0 0 7.3482 7.3482 92.604 0 0 0 0.45371572735597 60.67470722356744 0.45371572735597 12.795000083553205 0 1.6549471895720984 1.0969100130080565 1.1549471895720984 0 + + [YR][TP]S{I|L}AS{I|L};[YR]{[VA]|[{I|L}G]}D{I|L}AS{I|L};[YR][DG]{I|L}{I|L}AS{I|L};[YR][TP]S{[SA]|[TG]}{I|L}{I|L};[YR][TP]{[VA]|[{I|L}G]}TS{I|L} 7.3482;6.077;5.3039;4.1192;3.9906 +;-;-;-;- + 744 NaN NaN 273740.9 NaN 7544 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10273 50.305 NaN 363970 35 0 52027 0.261 + 21670 PYVNNVPHL 9 80 526.7797214280747 1051.5448899229493 2 526.7799072265625 MULTI HCD FTMS 0 0 0 10271 134538.390625 0.8141546270840212 1 -0.02630615234375 2 Unmodified _PYVNNVPHL_ ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1 74.42276476219924 0.007657080072768255 2 PYVNNVPH{I|L} 9 0 + 52.538 0 0 4.9962 4.9962 86.945 0 0 0 11.317365755370403 5.999161495794425 5.999161495794425 9.208187539523749 0 1.6039171939081172 1.5228787452803376 0 0 + + PYVNNVPH{I|L};PYVNGGVPH{I|L};PYVGGNVPH{I|L};PYVGGGGVPH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNNVPH{I|L};[KA]{[CP]|[EA]}[YR]PA{M(Oxidation (M))|F};[YT]A[KS][HK]A{M(Oxidation (M))|F} 4.9962;4.1206;4.1206;3.249;3.0318;1.7748;1.4515 +;-;-;-;+;-;- + 628 + NaN NaN 148301.5 NaN 7545 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10274 50.308 NaN 791890 35 0 77317 0.261 + 4531 EYLERAPEL 9 75 560.288319611973 1118.5620862907458 2 560.2891235351562 MULTI HCD FTMS 0 0 0 10271 258397.796875 0.847929672346344 -1 0.039516448974609375 3 Unmodified _EYLERAPEL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 114.20165948288297 0.0022564706844261533 2 [YE]{I|L}ERA{I|L}[EP] 9 2 + 73.997 0 0 6.6154 6.6154 88.025 0 0 0 7.309224750678922 7.309224750678922 7.309224750678922 7.309224750678922 0 1.615356566548286 1.3010299956639813 1.5501648626366045 0 [YE]{I|L}ERA{I|L}[EP];[YE]{I|L}ERA[EP]{I|L};{[QN]|[E{I|L}]|[KN]}YERA[EP]{I|L};{[QN]|[E{I|L}]|[KN]}YE[VG]A[EP]{I|L};[YE]{I|L}E[KP]{I|L}{NN|[MP]|[D{I|L}]|[EV]};{[QN]|[E{I|L}]|[KN]}[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AP{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}YA[EP]{I|L};{[QN]|[E{I|L}]|[KN]}[VS][WE]P{M(Oxidation (M))|F}{I|L};[EP]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}E[YE]{I|L};[YE][KA][VS]Y{M(Oxidation (M))|F}{I|L} 6.6154;5.9619;4.3628;3.5396;3.3872;2.8379;2.7329;2.5231;2.4967;2.394 -;+;-;-;-;-;-;-;-;- + 670 + NaN NaN 207036.9 NaN 7546 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10275 50.312 NaN 170690 35 0 26186 0.262 + 30605 VPAWDHTL 8 50 469.74015676458305 937.4657605959661 2 469.7401428222656 MULTI HCD FTMS 0 0 0 10271 66107.5859375 0.5956352313343865 -2 0.06578826904296875 4 Unmodified _VPAWDHTL_ ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3 77.98433622928108 0.02047850178800545 2 VPAWDHT{I|L} 8 0 + 71.948 0 0 7.6748 7.6748 94.486 0 0 0 49.156687756324686 19.79364375124895 19.79364375124895 20.951753372113018 0 1.8851518780601921 1.6989700043360187 1.274227503252014 0 + + VPAWDHT{I|L};[VP]AWDHT{I|L} 7.6748;5.4398 +;+ + 46 + NaN NaN 117532.7 NaN 7547 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10276 50.315 NaN 168380 35 0 15213 0.261 + 16606 LVQVNEWS 8 60 487.7497526145233 973.4849522958466 2 487.7496337890625 MULTI HCD FTMS 0 0 0 10271 61377.9453125 0.8233033335268535 -1 0.039516448974609375 5 Unmodified _LVQVNEWS_ nc|ENSG00000115561|Q9Y3E7-3|CHMP3 42.09456458481378 0.20402248593209013 2 {I|L}VQG[DP][QA]{M(Oxidation (M))|F} 9 6 + 64.662 0 0 6.6424 6.6424 94.584 0 0 0 51.167593735903196 4.140749640939916 4.140749640939916 64.66244375758329 0 1.329689690656103 2 0.6989700043360187 0.805462187404089 {I|L}VQG[DP][QA]{M(Oxidation (M))|F} 6.6424 - 48 + NaN NaN 113850.6 NaN 7548 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10277 50.318 NaN 112800 35 0 11752 0.261 + 28853 TVLYMCLF 8 48 495.24544820500654 988.4763434768131 2 495.2452392578125 MULTI HCD FTMS 0 0 0 10271 22821.447265625 0.2960890467096017 5 -0.14472579956054688 6 Unmodified _TVLYMCLF_ REV__ENSG00000171505|ENST00000304880|OR1N1 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.2246 0 0 823.3974383027881 0 823.3974383027881 0 20 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.2246 + + 9 + NaN NaN 101334.7 NaN 7549 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10278 50.322 NaN 170480 35 0 24652 0.261 + 30355 VLHEHPDGPVF 11 43 416.2125673702181 NaN 0 416.22052001953125 PEAK HCD FTMS 0 0 0 10271 3586.471923828125 0.3254301493220019 -5 0.14786529541015625 7 Unmodified _VLHEHPDGPVF_ ENST00000396128.8_1_14:45398158-45398206:-|nuORF 3.2813086475875832 0.3328120158028032 2 KEV 3 9 6.1979 0 0 0.74636 0 0 200.10761657461745 271.07224451236567 471.1798610869831 0 0 0 0 0 0 0 0 0 KEV 0.74636 - 8 + NaN NaN 116612.7 NaN 7550 2726 10271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10280 50.326 NaN 2291700 35 0 406520 0.327 + 25692 SINNYSVDL 9 105 512.7508924728904 1023.4872320125809 2 513.7677001953125 MULTI HCD FTMS 0 0 0 10279 108021.28125 0.45771159628044883 5 -0.13805389404296875 1 Unmodified _SINNYSVDL_ REV__ENSG00000171492|ENST00000337338|LRRC8D 27.628801355627647 0.12213550946336599 2 EHG{M(Oxidation (M))|F}VVS 7 -1 45.82 0 0 4.4769 0 0 0 265.13047205142817 265.13047205142817 5.062601649140831 0 0 0 0 0 0 1.25 0 EHG{M(Oxidation (M))|F}VVS 4.4769 - 3019 + NaN NaN 443490.1 NaN 7551 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10281 50.331 NaN 1285100 35 0 150870 0.261 + 23131 RFEEAHFTF 9 81 592.2801715205328 1182.5457901078655 2 592.2803344726562 MULTI HCD FTMS 0 0 0 10279 651511.625 0.3816732029111216 4 -0.11841964721679688 2 Unmodified _RFEEAHFTF_ ENSG00000131788|ENST00000393045|PIAS3;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENST00000498436.2_1_1:145578572-145580415:+|nuORF 90.13494162714682 0.004522430935000059 2 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 74.452 0 0 6.2959 6.2959 85.207 0 0 0 1.7609125905568135 13.03248296405036 1.7609125905568135 1.7609125905568135 0 2.048455006504028 0 0.4247425010840047 0.28872548999643577 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]EEAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}EREAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAERE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}HAEER{M(Oxidation (M))|F};[HA]{[ET]|[MV]}{[HG]|PP}H{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}REAH{M(Oxidation (M))|F}{[ET]|[MV]};{[{M(Oxidation (M))|F}H]|[RQ]}AT{M(Oxidation (M))|F}ERE{M(Oxidation (M))|F};{M(Oxidation (M))|F}ER{M(Oxidation (M))|F}AH{M(Oxidation (M))|F}{[ET]|[MV]};[HA]{M(Oxidation (M))|F}T{M(Oxidation (M))|F}ERE{M(Oxidation (M))|F} 6.2959;6.147;6.1154;3.2863;3.1374;2.8838;2.7588;2.6185;2.5668;2.5128 -;+;-;-;-;-;-;-;-;- + 1385 NaN NaN 288103.5 NaN 7552 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10282 50.335 NaN 467840 35 0 134880 0.261 + 24684 RYLTGAWRL 9 74 568.3220609463524 1134.6295689595047 2 568.3221435546875 MULTI HCD FTMS 0 0 0 10279 220514.65625 0.701436945596226 3 -0.08553314208984375 3 Unmodified _RYLTGAWRL_ ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant;ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5 28.494509381512117 0.11816142465008336 2 {I|L}RY 3 7 27.92 0 0 2.4607 0 0 0 699.3580416315061 699.3580416315061 11.465912507003608 0 0 0 0 0.5 0 0 0.4247425010840047 {I|L}RY 2.4607 - 200 + NaN NaN 157892.1 NaN 7553 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10283 50.338 NaN 803550 35 0 79907 0.261 + 4532 EYLERAPEL 9 81 560.288319611973 1118.5620862907458 2 560.2877807617188 MULTI HCD FTMS 0 0 0 10279 304739.65625 1 0 0 4 Unmodified _EYLERAPEL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 96.36657018975838 0.004359138328518304 2 [YE]{I|L}ERA[EP]{I|L} 9 0 + 54.113 0 0 4.8377 4.8377 89.3 0 0 0 2.4251360389764045 11.71688296721753 2.4251360389764045 17.887254899964354 0 2.242992819099939 1.3010299956639813 2.138210492164445 0 + + [YE]{I|L}ERA[EP]{I|L};{[QN]|[E{I|L}]|[KN]}YERA[EP]{I|L};[YE]{I|L}E[KP]{I|L}{NN|[MP]|[D{I|L}]|[EV]};[EP]AR{I|L}E[YE]{I|L};[YE]{I|L}E[KP]V{[QN]|[E{I|L}]|[KN]};[EP]ARE{I|L}[YE]{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}YA[EP]{I|L};{[QN]|[E{I|L}]|[KN]}[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AP{M(Oxidation (M))|F}{I|L};[EP]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}E[YE]{I|L};[YE][KA][VS]Y{M(Oxidation (M))|F}{I|L} 4.8377;3.2386;3.1405;3.0697;2.9831;2.7407;2.6656;2.6082;2.3582;2.3421 +;-;-;-;-;-;-;-;-;- + 677 NaN NaN 209420.2 NaN 7554 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10284 50.341 NaN 168800 35 0 20026 0.262 + 26356 SSIDSEPAL 9 50 459.7244561094336 917.4343592856673 2 459.7243347167969 MULTI HCD FTMS 0 0 0 10279 88216.9296875 0.16340292543000226 7 -0.1939544677734375 5 Unmodified _SSIDSEPAL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 46.020951573049366 0.037705236580089195 2 SE[PA]{I|L} 5 4 43.372 0 0 4.7275 0 0 402.1760426251969 0 402.1760426251969 0 27.88750309660614 0 0 0 1.3807196863200843 0 1.1861818737241734 0 + SE[PA]{I|L} 4.7275 + + 32 NaN NaN 110421.7 NaN 7555 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10285 50.344 NaN 254780 35 0 26019 0.261 + 34366 YPEGFEIHSM 10 58 613.2633945636383 1224.5122361940764 2 613.2631225585938 MULTI HCD FTMS 0 0 0 10279 118150.9453125 0.39787323995538065 10 -0.28607940673828125 6 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 92.65332237495696 0.000798763162112469 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 107.89 0 0 8.8105 8.8105 96.715 0 0 0 87.70812200728862 11.121506059964545 11.121506059964545 28.1259189508755 0 1.8851518780601921 1.5228787452803376 1.566901560044258 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};YP{M(Oxidation (M))|F}{[DA]|[EG]}E{I|L}HS{M(Oxidation (M))|F};YPE[YT][YR]S{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE]GHS{M(Oxidation (M))|F};YPEG{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE]W{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[WY]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EP[YE][HQ]Y;[EP]Y[W{M(Oxidation (M))|F}]{I|L}E{[QN]|[E{I|L}]|[KN]} 8.8105;6.5136;5.2942;4.9927;4.8021;4.4776;3.4625;3.3651;3.314;1.5183 +;-;-;-;-;-;-;-;-;- + 622 + NaN NaN 121492.5 NaN 7556 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10286 50.348 NaN 257120 35 0 11748 0.261 + 34279 YPDRIMNTF 9 70 586.7735938013249 1171.5326346694496 2 586.7745361328125 MULTI HCD FTMS 0 0 0 10279 93786.46875 0.02776846456652406 75 -1.9778671264648438 7 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 44.391923383255 0.04518338856193886 2 YYTD 4 7 47.454 0 0 4.0506 0 0 0 626.2956026666624 626.2956026666624 5.397583793935681 0 0 0 0 0.25 2 0.3807196863200844 0 YYTD 4.0506 - 930 + NaN NaN 128900.2 NaN 7557 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10287 50.351 NaN 199360 35 0 74694 0.264 + 24410 RYKGPGFEYF 10 38 421.8767607381047 1262.608452814514 3 421.8767395019531 MULTI HCD FTMS 0 0 0 10279 65261.94140625 0.05753029415741309 18 -0.5049324035644531 8 Unmodified _RYKGPGFEYF_ ENSG00000166133|ENST00000315616|RPUSD2;nc|ENSG00000166133|Q8IZ73-2|RPUSD2 7.945399516374404 0.4332474418965133 2 Y{M(Oxidation (M))|F} 2 8 30.969 0 0 2.4528 0 0 934.4670429692698 0 934.4670429692698 0 30.969100130080562 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F} 2.4528 + + 7 + NaN NaN 108503.8 NaN 7558 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10288 50.354 NaN 172110 35 0 15161 0.261 + 4856 FADGKVYAL 9 49 492.2634296474692 982.5123063617384 2 492.2641296386719 MULTI HCD FTMS 0 0 0 10279 51172.8203125 1 0 0 9 Unmodified _FADGKVYAL_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000562988.5_1_16:2052496-2059683:-|nuORF;ENST00000565396.5_1_16:2053615-2059683:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 26.268140514670165 0.13340543277302316 2 D[RK]YA{I|L} 6 4 36.203 0 0 3.6847 0 0 218.1058827130875 0 218.1058827130875 0 33.10402823752675 0 0 0 1.3807196863200843 0 0 0 D[RK]YA{I|L} 3.6847 - 27 NaN NaN 102838.7 NaN 7559 2727 10279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10290 50.359 NaN 619130 35 0 67246 0.327 + 10865 IVQGPDPNL 9 69 476.758648700512 951.5027444678241 2 476.7584533691406 MULTI HCD FTMS 0 0 0 10289 449536.96875 0.8391641226637583 1 -0.026256561279296875 1 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 90.13494162714682 0.004522430935000059 2 [{I|L}V]QGPDPN{I|L} 9 0 + 75.166 0 0 7.8997 7.8997 91.893 0 0 0 24.13734275855269 64.16919826484923 24.13734275855269 9.208187539523749 0 2.305462187404089 1.6989700043360187 0 0.6861818737241735 + + [{I|L}V]QGPDPN{I|L};[{I|L}V]QGPDPGG{I|L};[{I|L}V][AG]GPDPN{I|L};[{I|L}V]Q[HD]EV{I|L};[{I|L}V][AG]GPDPGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPDPN{I|L};[{I|L}V][EP][NG]PN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}GPDPGG{I|L};[{I|L}V][AG][HD]EV{I|L};[DP]GQV{I|L}PN{I|L} 7.8997;6.9319;6.5318;5.2685;5.2476;4.9559;4.037;3.9881;3.6322;3.57 +;-;-;-;-;-;-;-;-;- + 514 NaN NaN 175864.3 NaN 7560 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10291 50.364 NaN 1522700 35 0 185000 0.261 + 35838 YYQHIVTTL 9 109 569.3004454356236 1136.586337938047 2 569.3005981445312 MULTI HCD FTMS 0 0 0 10289 708679.5625 0.7804640078786518 -2 0.05925750732421875 2 Unmodified _YYQHIVTTL_ ENSG00000116005|ENST00000433351|PCYOX1;nc|ENSG00000116005|Q9UHG3-2|PCYOX1 122.17920374332846 0.0010792739174387011 2 YYQH{I|L}VTT{I|L} 9 0 + 88.51 0 0 7.7873 7.7873 91.706 0 0 0 18.05462187404089 14.973024840566467 14.973024840566467 9.208187539523749 0 2.610924374808178 1.3979400086720375 0.9247425010840047 0 + + YYQH{I|L}VTT{I|L};YY[AG]H{I|L}VTT{I|L};YYQH{I|L}TVT{I|L};{I|L}HYQYVTT{I|L};YY[AG]H{I|L}TVT{I|L};{I|L}HY[AG]YVTT{I|L};YYQH{I|L}TTV{I|L};N[W{I|L}]QYVTT{I|L};YYQH{I|L}TT{I|L}V;YY[AG]H{I|L}TTV{I|L} 7.7873;6.9772;6.3979;6.1988;5.5878;5.3887;5.2071;5.0289;4.4401;4.397 +;-;-;-;-;-;-;-;-;- + 4263 NaN NaN 323050.8 NaN 7561 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10292 50.367 NaN 663330 35 0 71947 0.261 + 18586 MVSDEYEQL 9 84 565.2395762659492 1128.4645995986982 2 565.2402954101562 MULTI HCD FTMS 0 0 0 10289 286361.4375 0.2906368508950923 -5 0.15457916259765625 3 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 2 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 66.062 0 0 5.8542 5.8542 88.967 0 0 0 4.013393110150133 42.89717559549214 4.013393110150133 9.208187539523756 0 1.9581706663129559 0 1.110924374808178 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};[{M(Oxidation (M))|F}V]S[YE]DEQ{I|L};{[QN]|[E{I|L}]|[KN]}Q[Y{M(Oxidation (M))|F}]DSD{I|L};{[QN]|[E{I|L}]|[KN]}ET[YC(Carbamidomethyl (C))]SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[Y{M(Oxidation (M))|F}]DSD{I|L};[Q{I|L}]E[Y{M(Oxidation (M))|F}]DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSD{I|L} 5.8542;5.0382;3.5689;3.5642;3.5173;2.9436;2.804;2.7838;2.7623;2.7408 +;-;-;-;-;-;-;-;-;- + 730 NaN NaN 182981 NaN 7562 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10293 50.371 NaN 191560 35 0 24198 0.261 + 27135 SYMLVNENRF 10 55 644.8031837003241 1287.591814467448 2 644.8032836914062 MULTI HCD FTMS 0 0 0 10289 72952.0546875 0.6331653027104117 3 -0.08546829223632812 4 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 53.4695610476455 0.06517150602811057 2 W{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 9 2 68.153 0 0 5.2931 0 0 63.99796713978896 0 63.99796713978896 0 47.18433447093204 0 0 0 2.504432191740108 0 0 0 W{M(Oxidation (M))|F}{I|L}VNENR{M(Oxidation (M))|F} 5.2931 - 571 + NaN NaN 132228.2 NaN 7563 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10294 50.374 NaN 133970 35 0 10887 0.262 -1 AYPHNLMTF 9 43 555.2577693209265 1108.500985708653 2 555.2581787109375 MULTI HCD FTMS 0 0 0 10289 43401.89453125 0.03987735449305829 57 -1.4952163696289062 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 28.416 0 0 2.5635 0 0 695.3401966779312 0 695.3401966779312 0 28.32773124424534 0 0 0 0.5 0 0.5 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.5635 + + 13 NaN NaN 123919.7 NaN 7564 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10295 50.377 NaN 161690 35 0 6059.3 0.261 -1 YYMIGEQKF 9 48 597.7787462058528 1193.5429394785056 2 597.7782592773438 MULTI HCD FTMS 0 0 0 10289 60440.546875 0.38659172015848264 10 -0.27935791015625 6 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 15.248480904072842 0.22861284681709862 2 YY{M(Oxidation (M))|F}{I|L} 4 -1 36.555 0 0 3.0627 0 0 0 604.2708274477653 604.2708274477653 18.595756168365014 0 0 0 0 0.4247425010840047 2 0 0 YY{M(Oxidation (M))|F}{I|L} 3.0627 + + 6 + NaN NaN 117211.8 NaN 7565 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10296 50.381 NaN 84325 35 0 10849 0.261 + 24796 RYPDRITLI 9 40 573.8350956172454 1145.6556383012908 2 574.3361206054688 MULTI HCD FTMS 0 0 0 10289 24451.865234375 0.01956430944806052 26 -0.6884040832519531 7 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 8.155526934196011 0.2891920862272901 2 RY 2 7 17.959 0 0 1.5676 0 0 0 823.4688204400999 823.4688204400999 12.474250108400469 0 0 0 0 0 0 0 0 + RY 1.5676 + + 6 + NaN NaN 93829.6 NaN 7566 2728 10289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10298 50.386 NaN 603370 35 0 30652 0.327 + 12336 KMPKFKMPSF 10 74 414.22404081135323 1239.6502930342597 3 414.22412109375 MULTI HCD FTMS 0 0 0 10297 275738.71875 0.7739568478598569 -3 0.08551406860351562 1 Unmodified _KMPKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 81.9152076656658 0.003466872489127602 2 KMPK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 95.588 0 0 7.7109 7.7109 95.647 0 0 0 69.20076147708399 16.53212513775344 16.53212513775344 36.638319829744916 0 2.2931576817365436 0 1.2302046884880937 0 + + KMPK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PK{M(Oxidation (M))|F}[PS]MK{M(Oxidation (M))|F};[KP]MK{M(Oxidation (M))|F}[PS]MK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP]MK{M(Oxidation (M))|F};[KP]M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP]MK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PKE[RN]P[Q{I|L}] 7.7109;4.7554;4.2455;2.7797;2.2699;1.9901 +;-;-;-;-;- + 539 + NaN NaN 193797.8 NaN 7567 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10299 50.39 NaN 441070 35 0 104490 0.261 -1 0 51 607.0376589450408 2424.121529913763 4 607.3067626953125 MULTI HCD FTMS 0 0 0 10297 6915.27587890625 0.16609882018285116 -4 0.125030517578125 2 NaN NaN 2 E{I|L}AA 4 -1 23.36 0 0 0.96364 0 0 1342.6184248350448 694.2784517877561 2036.8968766228008 0 0 0 0 0 0 0 0.3807196863200844 0 E{I|L}AA 0.96364 - 58 + NaN NaN 158286.2 NaN 7568 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10300 50.394 NaN 193210 35 0 20150 0.261 + 35329 YWMHVQNTF 9 57 621.2741052049596 1240.533657476719 2 621.274658203125 MULTI HCD FTMS 0 0 0 10297 84849.8125 0.23356153919734204 -7 0.20711898803710938 3 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 81.89019881105858 0.005240739447516426 2 EQNT{M(Oxidation (M))|F} 5 5 53.954 0 0 4.3492 0 0 603.2465077130875 0 603.2465077130875 0 40.14136888583522 0 0 0 1.1747425010840047 0 0 0.4247425010840047 EQNT{M(Oxidation (M))|F} 4.3492 - 161 NaN NaN 116958.9 NaN 7569 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10301 50.397 NaN 227230 35 0 31613 0.261 -1 LPDQDEMDL 9 56 546.231568540663 1090.448584148126 2 546.232177734375 MULTI HCD FTMS 0 0 0 10297 66190.25 0.49676273317913533 -8 0.23337936401367188 4 Oxidation (M) _LPDQDEM(Oxidation (M))DL_ ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4 17.44264345198275 0.2096557692338702 2 DE{M(Oxidation (M))|F}D{I|L} 5 -1 45.164 0 0 4.1418 0 0 453.22191054511876 0 453.22191054511876 0 24.194699959806982 0 0 0 1.5 0 0.3252574989159953 0 DE{M(Oxidation (M))|F}D{I|L} 4.1418 + + 169 NaN NaN 123443.7 NaN 7570 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10302 50.4 NaN 80587 35 0 8738 0.261 + -1 FWWCLSHN 8 49 575.2516977495336 NaN 0 575.3128051757812 PEAK HCD FTMS 0 0 0 10297 4790.68701171875 0.8314417555098659 -1 0.026256561279296875 5 Carbamidomethyl (C) _FWWC(Carbamidomethyl (C))LSHN_ REV__chr6:53982850-54121447|119|12.03|0.5|4.59|+|2|MLIP,MLIP|1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106494.7 NaN 7571 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10303 50.404 NaN 130630 35 0 6008.5 0.261 + 25576 SFSQKQNLI 9 53 532.7903462780607 1063.5661396229214 2 532.7907104492188 MULTI HCD FTMS 0 0 0 10297 15616.40234375 0.009441347100753297 43 -1.11505126953125 6 Unmodified _SFSQKQNLI_ ENSG00000198453|ENST00000333987|ZNF568;nc|ENSG00000291239|Q3ZCX4-2|ZNF568 14.838274106304384 0.23215694253501695 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 6 34.309 0 0 3.2259 0 0 0 739.4098340411432 739.4098340411432 24.61635608164464 0 0 0 0 0.4247425010840047 2 0.5 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3.2259 + + 12 NaN NaN 105288.2 NaN 7572 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10304 50.407 NaN 87079 35 0 6303.8 0.261 + 22146 QKEQLNIP 8 47 485.27174615134203 968.5289393694841 2 485.2716064453125 MULTI HCD FTMS 0 0 0 10297 21025.64453125 0.467061640285053 2 -0.05921173095703125 7 Unmodified _QKEQLNIP_ REV__ENSG00000038358|ENST00000358933|EDC4;REV__ENST00000536072.6_1_16:67909906-67914140:+|nuORF;REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.3525 0 0 803.4840612950685 0 803.4840612950685 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3525 - 14 + NaN NaN 113725.7 NaN 7573 2729 10297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10306 50.412 NaN 490530 35 0 59337 0.327 + 20312 NYQGHFHLF 9 79 581.7750507775596 1161.5355486219191 2 581.7752075195312 MULTI HCD FTMS 0 0 0 10305 217789.78125 0.5850141022412491 3 -0.08215713500976562 1 Unmodified _NYQGHFHLF_ ENST00000283632.4_1_2:86968058-86968091:+|nuORF 117.59872219059416 0.0017018906413822257 2 NYQGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F} 9 0 + 83.643 0 0 7.2011 7.2011 86.105 0 0 0 0.1599409116367667 0.1599409116367667 0.1599409116367667 0.1599409116367667 0 2.4604093769761874 2 0 0.4247425010840047 + + NYQGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YN]QGH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};[YN][AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NY[AG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S[NG]GH{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};NY{[CT]|[{M(Oxidation (M))|F}G]}[HQ]H{I|L}{M(Oxidation (M))|F};NY{[MS]|[{M(Oxidation (M))|F}A]}[HN]H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}[NS][HN]H{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[HN]H{I|L}{M(Oxidation (M))|F} 7.2011;7.1873;6.3945;6.0426;4.0127;3.7489;3.5396;3.0847;1.4138;0.89546 +;+;-;-;-;-;-;-;-;- + 298 + NaN NaN 162040.9 NaN 7574 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10307 50.416 NaN 496760 35 0 107440 0.261 + 12966 KYIEGVSDF 9 75 529.2634012843897 1056.5122496355793 2 529.2636108398438 MULTI HCD FTMS 0 0 0 10305 178466.03125 0.482615071560542 3 -0.08215713500976562 2 Unmodified _KYIEGVSDF_ ENSG00000197429|ENST00000396478|IPP;nc|ENSG00000197429|Q9Y573-2|IPP 110.5527297667825 0.0028521687250969148 2 [YK]{I|L}EGVSD{M(Oxidation (M))|F} 9 0 + 78.725 0 0 7.4514 7.4514 94.47 0 0 0 5.6424927368725974 56.98638135581298 5.6424927368725974 25.586681479559203 0 2.7104093769761874 0 0.9559771852360797 0 + + [YK]{I|L}EGVSD{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[K{I|L}]VSD{M(Oxidation (M))|F};[YK]{I|L}ETAAD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[K{I|L}]VSD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}S[K{I|L}]VSD{M(Oxidation (M))|F};[YK]{I|L}EGVG[YE];{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[{I|L}V]KSD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[{I|L}V]KSD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}S[{I|L}V]KSD{M(Oxidation (M))|F};[YK]{I|L}W{[MG]|[TS]}{M(Oxidation (M))|F}{I|L} 7.4514;5.0296;4.7176;4.578;4.4114;4.4065;4.2981;3.8465;3.6798;2.7335 +;-;-;-;-;-;-;-;-;- + 830 NaN NaN 158131.3 NaN 7575 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10308 50.42 NaN 238270 35 0 21455 0.261 + 23238 RGFLDNLL 8 52 474.2692091407155 946.523865348231 2 474.26898193359375 MULTI HCD FTMS 0 0 0 10305 96131.8671875 0.6204721726209386 -4 0.11183929443359375 3 Unmodified _RGFLDNLL_ REV__ENSG00000162104|ENST00000294016|ADCY9 30.224811164608877 0.3565035853404968 2 {I|L}{I|L} 2 -1 22.959 0 0 2.4256 0 0 702.345506736525 0 702.345506736525 0 11.989700043360187 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4256 + + 28 NaN NaN 123927.4 NaN 7576 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10309 50.423 NaN 190860 35 0 23881 0.261 -1 VMYMQDYW 8 65 576.2304412810768 1150.4463296289534 2 576.22998046875 MULTI HCD FTMS 0 0 0 10305 65802.7734375 0.5902402550237228 -1 0.026325225830078125 4 Oxidation (M) _VM(Oxidation (M))YMQDYW_ ENSG00000211584|ENST00000442218|SLC48A1 14.581692164780916 0.48650662947107914 2 DSD{I|L} 4 -1 38.404 0 0 3.3382 0 0 702.2838001935562 0 702.2838001935562 0 29.45168783987789 0 0 0 0.9247425010840047 0 0.3494850021680094 0 DSD{I|L} 3.3382 - 81 NaN NaN 114010.3 NaN 7577 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10310 50.427 NaN 216910 35 0 28621 0.261 + 15973 LPQHEEICL 9 47 541.2707119864826 1080.5268710397652 2 541.2706298828125 MULTI HCD FTMS 0 0 0 10305 79861.4921875 0.3666192056459726 -4 0.11183929443359375 5 Unmodified _LPQHEEICL_ ENSG00000143624|ENST00000318967|INTS3;ENST00000481797.5_1_1:153701080-153719633:+|nuORF;nc|ENSG00000143624|Q68E01|INTS3 29.84058131909904 0.11198220037953927 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQEC{I|L}{I|L} 9 6 + 62.145 0 0 5.7514 5.7514 84.439 0 0 0 10.642492736872597 56.660546934575464 10.642492736872597 1.9897000433601875 0 0.5 0 0.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[AG]EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[AG]E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]EEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]EE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RD]VEC{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SE{I|L}C{I|L} 5.7514;5.5672;5.432;5.2478;4.8992;4.715;4.5798;4.3957;4.2563;4.0868 -;-;-;-;-;-;-;-;-;- 258 NaN NaN 132149 NaN 7578 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10311 50.43 NaN 286290 35 0 22322 0.261 -1 HYMPPPYASL 10 70 596.2789078588603 1190.5432627845205 2 596.27880859375 MULTI HCD FTMS 0 0 0 10305 41956.23828125 0.5749621698682653 -5 0.15135574340820312 6 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant 39.957323273324995 0.14577711486213385 2 {[WN]|[YH]}{M(Oxidation (M))|F}RRH[{M(Oxidation (M))|F}E] 8 -1 + 39.671 0 0 3.3322 3.3322 89.191 0 0 0 15.1059905927697 0.6694678963061307 0.6694678963061307 39.67084689121528 0 0.3807196863200844 1.5228787452803376 0 0 {[WN]|[YH]}{M(Oxidation (M))|F}RRH[{M(Oxidation (M))|F}E] 3.3322 - 107 NaN NaN 139458.3 NaN 7579 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10312 50.433 NaN 284830 35 0 40584 0.262 + 22451 QQPAPQPLL 9 58 496.2820675782316 990.5495822232632 2 496.28216552734375 MULTI HCD FTMS 0 0 0 10305 39456.65625 0.5802902800310686 -1 0.026325225830078125 7 Unmodified _QQPAPQPLL_ REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1 15.847184025352803 0.2234401846867398 2 [{I|L}P][C(Carbamidomethyl (C))S]AA{M(Oxidation (M))|F}{I|L} 8 -1 26.616 0 0 2.687 0 0 0 128.08984627560474 128.08984627560474 2.3189413469849285 0 0 0 0 0.3807196863200844 1.6989700043360187 0.7614393726401688 0 [{I|L}P][C(Carbamidomethyl (C))S]AA{M(Oxidation (M))|F}{I|L} 2.687 - 48 NaN NaN 132865.2 NaN 7580 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10313 50.437 NaN 163950 35 0 16436 0.261 + 34655 YPSLREAAL 9 53 510.2797523462883 1018.5449517593767 2 510.2800598144531 MULTI HCD FTMS 0 0 0 10305 48056.84375 0.1756703561021905 -12 0.3450469970703125 8 Unmodified _YPSLREAAL_ chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4 29.84058131909904 0.11198220037953927 2 YPS{I|L} 4 5 55.165 0 0 5.4161 0 0 0 555.2893160455686 555.2893160455686 35.24350030035414 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 + YPS{I|L} 5.4161 + + 24 + NaN NaN 126497.5 NaN 7581 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10314 50.44 NaN 340840 35 0 67369 0.261 + 8710 HGRFKRVL 8 58 506.810915221441 1011.607277509682 2 506.810791015625 MULTI HCD FTMS 0 0 0 10305 15044.205078125 0.4481523062005288 2 -0.052520751953125 9 Unmodified _HGRFKRVL_ REV__ENSG00000185736|ENST00000381312|ADARB2;REV__ENST00000469464.1_1_10:1262889-1279753:-|nuORF 5.230669730166228 0.5342319408533849 2 A{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.0728 0 0 775.4908814909305 0 775.4908814909305 0 8.26606256887672 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 2.0728 - 50 + NaN NaN 133054.1 NaN 7582 2730 10305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10316 50.445 NaN 2036900 35 0 475490 0.327 + 24385 RYIPTAAAF 9 81 505.27681951727675 1008.5390861013535 2 505.2767028808594 MULTI HCD FTMS 0 0 0 10315 977827.5 0.15309199398984435 -5 0.14472579956054688 1 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 74.92900055777586 0.007493270374442853 2 [Y{I|L}]R[TP]AAA{M(Oxidation (M))|F} 9 2 + 80.657 0 0 7.9974 7.9974 95.695 0 0 0 13.089767685839533 63.82454362116839 13.089767685839533 29.21327198560853 0 2.305462187404089 1.0457574905606752 1.4291746928241125 0 [Y{I|L}]R[TP]AAA{M(Oxidation (M))|F};[HV][VP][TP]AAA{M(Oxidation (M))|F};[Y{I|L}]R[SG][VP]A{M(Oxidation (M))|F};[Y{I|L}]R[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[SG][PG]{I|L}{M(Oxidation (M))|F};[HV][VP]{[WT]|[RM]}A{[TV]|[{I|L}S]};{[NV]|[RG]}[TP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F};[Y{I|L}]R{[RE]|[WV]}A{[DS]|[MA]|[CV]|TT};[YK]{I|L}[EP]{[NV]|[RG]}{M(Oxidation (M))|F};[KP]{[DA]|[EG]}RY{I|L}{M(Oxidation (M))|F} 7.9974;5.1008;4.7958;4.1971;3.1156;1.9838;1.7758;1.0562;1.0545;0.93106 -;-;-;-;-;-;-;-;-;- 389 NaN NaN 399003.4 NaN 7583 2731 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10317 50.449 NaN 227110 35 0 17797 0.261 + 8157 GPIKPEPIL 9 51 482.2975017275674 962.5804505219348 2 482.29742431640625 MULTI HCD FTMS 0 0 0 10315 95155.6171875 1 0 0 2 Unmodified _GPIKPEPIL_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8 23.789781309258295 0.1548179064208189 2 K[EP]P{I|L}{I|L} 6 3 40.278 0 0 4.1844 0 0 267.15843398261876 0 267.15843398261876 0 23.288493772929044 0 0 0 1.1861818737241734 0 0 0 + K[EP]P{I|L}{I|L} 4.1844 + + 46 NaN NaN 122001.2 NaN 7584 2731 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10318 50.453 NaN 234900 35 0 22649 0.261 + -1 YPCDMFEQL 9 69 581.2344324945033 1160.4543120558064 2 581.2346801757812 MULTI HCD FTMS 0 0 0 10315 29934.953125 0.6776931463776369 -2 0.05921173095703125 3 Oxidation (M) _YPCDM(Oxidation (M))FEQL_ REV__ENSG00000136720|ENST00000259241|HS6ST1;REV__nc|ENSG00000136720|O60243-2|HS6ST1 10.073929032068715 0.27331982688540024 2 [YN]{[{M(Oxidation (M))|F}H]|[RQ]}D 5 -1 19.264 0 0 1.6601 0 0 0 481.2074373834594 481.2074373834594 0.41997855814010165 0 0 0 0 0 2 0 0.2742275032520141 [YN]{[{M(Oxidation (M))|F}H]|[RQ]}D 1.6601 - 114 + NaN NaN 119510.2 NaN 7585 2731 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10319 50.456 NaN 137660 35 0 27364 0.262 -1 IPMEEKRGWYF 11 44 491.2395206806744 1470.6967326422232 3 491.2398681640625 MULTI HCD FTMS 0 0 0 10315 38930.46875 0.735029423081334 -3 0.08546829223632812 4 Oxidation (M) _IPM(Oxidation (M))EEKRGWYF_ ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 3.3557259375316324 0.404203592500566 2 {I|L}P 2 -1 19.464 0 0 1.3235 0 0 0 1257.536005081518 1257.536005081518 4.859856381998782 0 0 0 0 0 0 0 0 {I|L}P 1.3235 + + 4 + NaN NaN 107348.6 NaN 7586 2731 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10320 50.46 NaN 132940 35 0 8725.2 0.261 + 3564 EIVHKYYN 8 57 533.2732920896399 NaN 0 533.2914428710938 PEAK HCD FTMS 0 0 0 10315 14407.642578125 0.46226853401092743 -10 0.2925910949707031 5 Unmodified _EIVHKYYN_ tr|U7T3B4|U7T3B4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00190PE=4SV=1 7.910154910731844 0.38822285293237185 2 Y 1 7 5.4846 0 0 0.51521 0 0 322.09546005642966 576.3607271783811 898.4561872348108 0 0 0 0 0 0 0 0 0 + Y 0.51521 + + 7 + NaN NaN 112862.3 NaN 7587 2731 10315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10322 50.465 NaN 924770 35 0 176170 0.327 + 5501 FKNSSDVDI 9 97 512.7508924728904 1023.4872320125809 2 513.7678833007812 MULTI HCD FTMS 0 0 0 10321 22898.8671875 0.09702789054267598 10 -0.26845550537109375 1 Unmodified _FKNSSDVDI_ ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2 20.41453444215458 0.18397929046831515 2 EHS{I|L}CVS 7 7 48.052 0 0 4.6949 0 0 0 265.1302771986723 265.1302771986723 20.663478858494244 0 0 0 0 0.3054621874040891 0 1.079689690656103 0 EHS{I|L}CVS 4.6949 - 1216 + NaN NaN 233851.4 NaN 7588 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10323 50.469 NaN 635480 35 0 62237 0.261 + 23132 RFEEAHFTF 9 76 592.2801715205328 1182.5457901078655 2 592.2805786132812 MULTI HCD FTMS 0 0 0 10321 165537.8125 0.0969765460436346 9 -0.24961090087890625 2 Unmodified _RFEEAHFTF_ ENSG00000131788|ENST00000393045|PIAS3;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENST00000498436.2_1_1:145578572-145580415:+|nuORF 51.41523569358685 0.02959097413485123 2 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 2 + 64.279 0 0 5.4357 5.4357 92.541 0 0 0 2.6312881885056782 51.57628705335276 2.6312881885056782 64.2793246145566 0 1.5629529932484498 0 0.4247425010840047 0 [{M(Oxidation (M))|F}E]REAH{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.4357 - 300 NaN NaN 183740.7 NaN 7589 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10324 50.473 NaN 391680 35 0 66253 0.262 + -1 PIASMKLSE 9 55 496.2586757771124 NaN 0 496.2716369628906 PEAK HCD FTMS 0 0 0 10321 5837.09912109375 0.7700128722179868 -1 0.019634246826171875 3 Oxidation (M) _PIASM(Oxidation (M))KLSE_ REV__ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant;REV__ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;REV__ENSG00000116127|ENST00000613296|ALMS1;REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1;REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 11.640296217721598 0.23883959125015683 2 {I|L}{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.80351 0 0 131.06816080544974 596.2639864557249 727.3321472611747 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.80351 - 31 + NaN NaN 145594.7 NaN 7590 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10325 50.476 NaN 176550 35 0 20111 0.261 + 28978 TYARNLPAF 9 59 526.7797214280747 1051.5448899229493 2 526.7797241210938 MULTI HCD FTMS 0 0 0 10321 44499.91015625 0.26928973648508864 7 -0.19380950927734375 4 Unmodified _TYARNLPAF_ ENSG00000129696|ENST00000431156|TTI2;ENST00000519356.1_1_8:33331766-33367302:-|nuORF 13.90604991867851 0.24021115267848145 2 PA{M(Oxidation (M))|F} 3 6 17.76 0 0 1.6889 0 0 718.3768301195392 0 718.3768301195392 0 8.467874862246564 0 0 0 0.7302046884880938 0 0 0 + PA{M(Oxidation (M))|F} 1.6889 + + 40 + NaN NaN 111137.5 NaN 7591 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10326 50.479 NaN 321320 35 0 23184 0.261 -1 HYMPPPYASL 10 65 596.2789078588603 1190.5432627845205 2 596.29541015625 MULTI HCD FTMS 0 0 0 10321 66191.171875 0.9070741650445087 -3 0.07884597778320312 5 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant 26.88365393820708 0.25965138844209146 2 {[WN]|[YH]}{M(Oxidation (M))|F}RRH[{M(Oxidation (M))|F}E] 8 -1 + 32.681 0 0 2.7451 2.7451 87.772 0 0 0 9.488474775526186 13.45098040014257 9.488474775526186 23.26651486474027 0 0.3807196863200844 1.5228787452803376 0 0 {[WN]|[YH]}{M(Oxidation (M))|F}RRH[{M(Oxidation (M))|F}E];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EC]N{M(Oxidation (M))|F}K[{M(Oxidation (M))|F}E];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EC]GG{M(Oxidation (M))|F}K[{M(Oxidation (M))|F}E] 2.7451;0.79078;0.01734 -;-;- 324 NaN NaN 142314.9 NaN 7592 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10327 50.483 NaN 102090 35 0 15851 0.263 + 30606 VPAWDHTL 8 42 469.74015676458305 937.4657605959661 2 469.7397766113281 MULTI HCD FTMS 0 0 0 10321 54886.984375 0.49453661288370926 4 -0.11847686767578125 6 Unmodified _VPAWDHTL_ ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3 30.224811164608877 0.3565035853404968 2 VPA 3 5 31.198 0 0 3.3279 0 0 0 667.2825411432249 667.2825411432249 14.744237387763093 0 0 0 0 0.5 0 0 0 + VPA 3.3279 + + 10 + NaN NaN 112977 NaN 7593 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10328 50.486 NaN 104130 35 0 7536.8 0.261 -1 MPMQDIKMIL 10 38 634.3084216141315 1266.6022902950629 2 634.309326171875 MULTI HCD FTMS 0 0 0 10321 32622.953125 0.6529765464130324 2 -0.05590057373046875 7 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.5288652416199255 0.4513317009562028 2 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 20.005 0 0 1.5794 0 0 747.2897206037125 0 747.2897206037125 0 16.510234424404686 0 0 0 0.3807196863200844 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.5794 + + 4 NaN NaN 102116.1 NaN 7594 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10329 50.489 NaN 217960 35 0 18907 0.262 -1 YYASAFSMM 9 49 551.7148422700345 1101.415131606869 2 551.715576171875 MULTI HCD FTMS 0 0 0 10321 27143.13671875 0.6792052235705802 2 -0.05590057373046875 8 2 Oxidation (M) _YYASAFSM(Oxidation (M))M(Oxidation (M))_ ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST 11.640296217721598 0.25978676193971967 2 D{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 4 -1 17.179 0 0 1.5597 0 0 587.2789784162125 0 587.2789784162125 0 15.189549981487076 0 0 0 0.5 0 0.4247425010840047 0 D{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 1.5597 - 7 NaN NaN 119490.1 NaN 7595 2732 10321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10331 50.494 NaN 306830 35 0 31398 0.327 + 4533 EYLERAPEL 9 68 560.288319611973 1118.5620862907458 2 560.2891845703125 MULTI HCD FTMS 0 0 0 10330 57621.76171875 0.18908520941389623 6 -0.16417312622070312 1 Unmodified _EYLERAPEL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 45.739877483867886 0.03899552410870734 2 [YE]{I|L}ERA 6 3 36.762 0 0 3.2866 0 0 0 354.1667311756664 354.1667311756664 1.8924048782842675 0 0 0 0 1.0387254899964358 1.3979400086720375 0 0 + [YE]{I|L}ERA 3.2866 + + 299 + NaN NaN 132578.1 NaN 7596 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10332 50.499 NaN 216040 35 0 17338 0.261 + -1 FDTDEMEQL 9 69 572.2293543669234 1142.4441558006467 2 572.2301025390625 MULTI HCD FTMS 0 0 0 10330 64872.2265625 0.821204781863099 1 -0.026264190673828125 2 Oxidation (M) _FDTDEM(Oxidation (M))EQL_ REV__ENST00000404589.7_1_3:58487368-58487425:+|nuORF 24.020572477871973 0.15282392193088168 2 C(Carbamidomethyl (C))EQ{I|L} 4 -1 37.937 0 0 3.3207 0 0 594.2304239664655 0 594.2304239664655 0 23.472711111689563 0 0 0 1.3494850021680094 0 0.28872548999643577 0.7742275032520141 C(Carbamidomethyl (C))EQ{I|L} 3.3207 - 234 + NaN NaN 114086.8 NaN 7597 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10333 50.502 NaN 163680 35 0 16481 0.261 + 34367 YPEGFEIHSM 10 59 613.2633945636383 1224.5122361940764 2 613.2630004882812 MULTI HCD FTMS 0 0 0 10330 68092.125 0.22930019152652958 16 -0.4257011413574219 3 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 78.7280429016045 0.0072433801744089844 2 YP{M(Oxidation (M))|F}GEE{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 2 + 83.727 0 0 6.8375 6.8375 93.496 0 0 0 69.46185673204745 11.077184142563468 11.077184142563468 27.29223510866617 0 1.2302046884880937 1.5228787452803376 1.1861818737241734 0 YP{M(Oxidation (M))|F}GEE{I|L}H{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YPE[YT][YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};YP{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}[HS]{[QN]|[E{I|L}]|[KN]};YPE{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}EGEPY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}[VS]EPY 6.8375;4.6087;4.0927;4.0265;3.2078;2.312 -;-;-;-;-;- 366 + NaN NaN 113281.2 NaN 7598 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10334 50.505 NaN 264760 35 0 12557 0.261 -1 YPDRIMNTF 9 67 586.7735938013249 1171.5326346694496 2 586.7742309570312 MULTI HCD FTMS 0 0 0 10330 93521.0390625 0.027689875672299944 81 -2.120025634765625 4 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 29.43715596616401 0.11383414875064776 2 V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 5 -1 45.261 0 0 3.8634 0 0 545.256639549025 0 545.256639549025 0 2.0732594320775632 0 0 0 0.6549471895720985 0 0 0.4247425010840047 V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.8634 - 96 NaN NaN 130647 NaN 7599 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10335 50.509 NaN 98602 35 0 7228.9 0.261 -1 MPMQDIKMIL 10 35 634.3084216141315 1266.6022902950629 2 634.3077392578125 MULTI HCD FTMS 0 0 0 10330 25330.455078125 0.5070109077068576 3 -0.08884048461914062 5 3 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))QDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 4.5288652416199255 0.4513317009562028 2 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 16.995 0 0 1.3418 0 0 747.2956410138687 0 747.2956410138687 0 14.776296993281404 0 0 0 0.3807196863200844 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.3418 + + 3 NaN NaN 102144.6 NaN 7600 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10336 50.512 NaN 107270 35 0 14329 0.264 + 536 APDKDYFL 8 48 484.7399536693246 967.4653544054493 2 484.7402038574219 MULTI HCD FTMS 0 0 0 10330 30002.849609375 0.7145522039190396 -3 0.08215713500976562 6 Unmodified _APDKDYFL_ DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF 9.38312468134398 0.524755689532147 2 {M(Oxidation (M))|F}{I|L} 2 6 23.583 0 0 2.4377 0 0 689.2989979474625 0 689.2989979474625 0 4.119543704721593 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.4377 + + 24 NaN NaN 91435.1 NaN 7601 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10337 50.515 NaN 163110 35 0 8355.3 0.261 + -1 CDFLNWGNTF 10 43 637.2687837379588 1272.5230145427174 2 637.26806640625 MULTI HCD FTMS 0 0 0 10330 26637.087890625 0.4410889240800684 -4 0.10848236083984375 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 7.608950283845883 0.4350283211712914 2 QNT{M(Oxidation (M))|F} 4 -1 34.553 0 0 2.7153 0 0 764.293260642775 0 764.293260642775 0 31.453650195120844 0 0 0 0.5 0 0 0 QNT{M(Oxidation (M))|F} 2.7153 - 13 NaN NaN 119535.4 NaN 7602 2733 10330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10339 50.52 NaN 1417400 35 0 176550 0.327 + 18587 MVSDEYEQL 9 84 565.2395762659492 1128.4645995986982 2 565.2396850585938 MULTI HCD FTMS 0 0 0 10338 867576.25 0.880529275913323 1 -0.029659271240234375 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 2 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 72.643 0 0 6.4373 6.4373 89.26 0 0 0 4.194699959806982 39.87404445422088 4.194699959806982 9.208187539523749 0 2.1307196863200843 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}QY{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{M(Oxidation (M))|F}DSD{I|L};[Q{I|L}]EY{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};[YE]Q{I|L}{M(Oxidation (M))|F}DSD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}[AG]Y{M(Oxidation (M))|F}DSD{I|L} 6.4373;5.6214;4.7333;4.709;4.5519;4.509;4.4913;4.4852;4.204;3.9173 +;-;-;-;-;-;-;-;-;- + 1026 NaN NaN 299262.7 NaN 7603 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10340 50.525 NaN 758530 35 0 96409 0.261 + 35839 YYQHIVTTL 9 87 569.3004454356236 1136.586337938047 2 569.3004760742188 MULTI HCD FTMS 0 0 0 10338 369947.09375 0.407420231610227 4 -0.11835479736328125 2 Unmodified _YYQHIVTTL_ ENSG00000116005|ENST00000433351|PCYOX1;nc|ENSG00000116005|Q9UHG3-2|PCYOX1 122.17920374332846 0.0010792739174387011 2 YYQH{I|L}VTT{I|L} 9 0 + 93.47 0 0 8.2237 8.2237 94.122 0 0 0 6.108018480247779 6.108018480247779 6.108018480247779 13.015384402724592 0 2.8737125054200234 1.5228787452803376 1.4604093769761874 0.3807196863200844 + + YYQH{I|L}VTT{I|L};YY[AG]H{I|L}VTT{I|L};YY{I|L}[HQ]VTT{I|L};N[W{I|L}]QYVTT{I|L};N[W{I|L}][AG]YVTT{I|L};N[DP]{I|L}PWV{I|L}[PS];N[DP]{I|L}PWVT[VP] 8.2237;7.0786;6.1139;4.8352;4.025;2.4;2.2451 +;-;-;-;-;-;- + 906 + NaN NaN 200951.4 NaN 7604 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10341 50.528 NaN 605970 35 0 31248 0.264 + 12337 KMPKFKMPSF 10 79 414.22404081135323 1239.6502930342597 3 414.2240905761719 MULTI HCD FTMS 0 0 0 10338 244178.84375 0.6853730556213898 2 -0.0625762939453125 3 Unmodified _KMPKFKMPSF_ AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 81.9152076656658 0.003466872489127602 2 KMPK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F} 10 0 + 91.2 0 0 7.3569 7.3569 93.579 0 0 0 50.76712783490896 16.53212513775344 16.53212513775344 18.098243298936637 0 2.341129063296272 0 0.7134679910804405 0 + + KMPK{M(Oxidation (M))|F}KMPS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PK{M(Oxidation (M))|F}PSMK{M(Oxidation (M))|F};[KP]MK{M(Oxidation (M))|F}PSMK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP]MK{M(Oxidation (M))|F};[KP]M{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP]MK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[WE][RH]P[Q{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}]G[RH]P[Q{I|L}] 7.3569;5.897;5.3331;2.8966;2.3328;0.31806;0.24144 +;-;-;-;-;-;- + 695 + NaN NaN 177151.6 NaN 7605 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10342 50.532 NaN 346140 35 0 56855 0.261 + 27275 SYPSAFSKL 9 62 500.26131653926103 998.5080801453221 2 500.2608947753906 MULTI HCD FTMS 0 0 0 10338 128070.109375 0.7336290767652998 -1 0.026264190673828125 4 Unmodified _SYPSAFSKL_ ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1 17.11289562659939 0.2125047172822487 2 K{I|L} 2 7 14.464 0 0 1.4486 0 0 739.313280174025 0 739.313280174025 0 2.1445565089121725 0 0 0 0 0 0 0 + K{I|L} 1.4486 + + 58 NaN NaN 146626 NaN 7606 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10343 50.535 NaN 84662 35 0 7175 0.261 + 10866 IVQGPDPNL 9 42 476.758648700512 951.5027444678241 2 476.7584533691406 MULTI HCD FTMS 0 0 0 10338 55792.1328125 0.1041488452291866 7 -0.1937103271484375 5 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 29.84058131909904 0.11198220037953927 2 [{I|L}V]Q 3 6 17.447 0 0 1.8337 0 0 0 608.2685851795434 608.2685851795434 14.34833115752497 0 0 0 0 0.8494850021680094 0 0 0 + [{I|L}V]Q 1.8337 + + 11 NaN NaN 112551.8 NaN 7607 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10344 50.538 NaN 94830 35 0 9393.3 0.261 -1 SYMLVNENRF 10 46 644.8031837003241 1287.591814467448 2 644.8034057617188 MULTI HCD FTMS 0 0 0 10338 26513.603515625 0.23011680572707707 9 -0.25170135498046875 6 Oxidation (M) _SYM(Oxidation (M))LVNENRF_ ENSG00000182195|ENST00000370526|LDOC1 30.7034409873982 0.22608124881558994 2 ENV{I|L}[EC]{M(Oxidation (M))|F} 7 -1 43.448 0 0 3.3744 0 0 435.2235584943375 0 435.2235584943375 0 43.3593385539001 0 0 0 1.3494850021680094 0 0 0.4247425010840047 ENV{I|L}[EC]{M(Oxidation (M))|F} 3.3744 - 46 NaN NaN 99372.8 NaN 7608 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10345 50.542 NaN 149140 35 0 49577 0.264 -1 0 36 421.8767607381047 1262.608452814514 3 421.87677001953125 MULTI HCD FTMS 0 0 0 10338 26674.57421875 0.02351441082292826 25 -0.6619529724121094 7 NaN NaN 2 Y{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0568 0 0 934.4644946080421 0 934.4644946080421 0 18.979400086720375 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 2.0568 - 6 NaN NaN 110809 NaN 7609 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10346 50.545 NaN 114380 35 0 15853 0.261 + 537 APDKDYFL 8 56 484.7399536693246 967.4653544054493 2 484.73974609375 MULTI HCD FTMS 0 0 0 10338 33933.671875 0.8081692352905769 -2 0.05590057373046875 8 Unmodified _APDKDYFL_ DYNLRB1|p.V90A|1|0.12|ENSG00000125971|chr20:34540602-34540602|T/C|missense_variant;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF 13.90604991867851 0.4914777452512057 2 {M(Oxidation (M))|F}{I|L} 2 6 25.969 0 0 2.6842 0 0 689.2996693341812 0 689.2996693341812 0 3.450528104279016 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.6842 + + 62 NaN NaN 96412.4 NaN 7610 2734 10338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10348 50.55 NaN 615780 35 0 60670 0.327 + 35330 YWMHVQNTF 9 94 621.2741052049596 1240.533657476719 2 621.274169921875 MULTI HCD FTMS 0 0 0 10347 280016.15625 0.7707854917637376 -1 0.029659271240234375 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 144.35026110057638 1.4798765981150827E-05 2 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 77.449 0 0 6.2432 6.2432 88.951 0 0 0 29.520782577686276 23.063813695018226 23.063813695018226 9.208187539523749 0 2.5924778212679485 1.3979400086720375 1.860924374808178 0.9604093769761876 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}[VG][HA]NT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QQ[HV]{M(Oxidation (M))|F}[WY];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]}W{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}Q[HV]{M(Oxidation (M))|F}[WY];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[AG][HV]{M(Oxidation (M))|F}[WY];[{M(Oxidation (M))|F}E]S{[{M(Oxidation (M))|F}H]|[RQ]}{[QN]|[E{I|L}]|[KN]}W{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]NQ[HV]{M(Oxidation (M))|F}[WY] 6.2432;5.5009;5.2192;5.1251;1.7253;1.6193;1.3578;0.98304;0.95053;0.87246 +;-;-;-;-;-;-;-;-;- + 2286 + NaN NaN 179171.1 NaN 7611 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10349 50.554 NaN 407930 35 0 86739 0.261 -1 0 61 607.0376589450408 2424.121529913763 4 607.3067626953125 MULTI HCD FTMS 0 0 0 10347 32383.177734375 0.777815333710446 2 -0.062465667724609375 2 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}A 3 -1 25.686 0 0 1.0596 0 0 0 2107.936041345362 2107.936041345362 2.951265191687966 0 0 0 0 0 1.5228787452803376 0 0 {[QN]|[E{I|L}]|[KN]}A 1.0596 - 56 NaN NaN 148293.2 NaN 7612 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10350 50.558 NaN 226820 35 0 42177 0.261 -1 YETFQQKM 8 52 545.7482896410951 1089.48202634899 2 546.2319946289062 MULTI HCD FTMS 0 0 0 10347 13637.912109375 0.9520109573935343 -1 0.029659271240234375 3 Oxidation (M) _YETFQQKM(Oxidation (M))_ ENSG00000132604|ENST00000254942|TERF2;nc|ENSG00000132604|Q15554-4|TERF2 10.183394434864962 0.5188676124868831 2 EV{M(Oxidation (M))|F} 3 -1 26.995 0 0 2.4778 0 0 696.3257285968401 0 696.3257285968401 0 7.269987279362624 0 0 0 0 0 0.3807196863200844 0 EV{M(Oxidation (M))|F} 2.4778 - 59 + NaN NaN 120406.6 NaN 7613 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10351 50.561 NaN 424220 35 0 195940 0.261 + -1 PERCNRQC 8 51 531.7326658964815 1061.450778859763 2 531.7327880859375 MULTI HCD FTMS 0 0 0 10347 125865.6875 0.8682935368354654 -1 0.029659271240234375 4 Carbamidomethyl (C) _PERCNRQC(Carbamidomethyl (C))_ REV__ENSG00000112761|ENST00000368666|CCN6;REV__nc|ENSG00000112761|O95389-2|CCN6 4.75600775471527 0.5349361699807423 2 R 1 -1 3.0989 0 0 0.29195 0 0 657.1981065958943 245.12964807681877 902.327754672713 0 0 0 0 0 0 0 0 0 R 0.29195 + + 7 + NaN NaN 155614.3 NaN 7614 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10352 50.565 NaN 1068400 35 0 194500 0.262 + 21370 PTPGARVF 8 71 422.73752572994607 843.4604985266922 2 422.7373352050781 MULTI HCD FTMS 0 0 0 10347 90878.046875 0.8885894939731941 -1 0.029659271240234375 5 Unmodified _PTPGARVF_ nc|ENSG00000188818|Q9H8X9-2|ZDHHC11 24.67388899826682 0.4122521268485776 2 [Y{I|L}]RAAAT 7 7 62.682 0 0 7.4315 0 0 0 94.03185616832994 94.03185616832994 34.361818737241734 0 0 0 0 1.75 2 0.2742275032520141 0 [Y{I|L}]RAAAT 7.4315 - 227 NaN NaN 248782 NaN 7615 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10353 50.568 NaN 200240 35 0 13673 0.261 + 20313 NYQGHFHLF 9 60 581.7750507775596 1161.5355486219191 2 581.7752075195312 MULTI HCD FTMS 0 0 0 10347 44183.4921875 0.11868309829597919 8 -0.22204208374023438 6 Unmodified _NYQGHFHLF_ ENST00000283632.4_1_2:86968058-86968091:+|nuORF 57.47134341890925 0.0211188941628804 2 [YN]Q{[HG]|PP}{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F} 9 0 + 29.863 0 0 2.571 2.571 88.241 0 0 0 3.920657615830322 3.7140090730174826 3.7140090730174826 29.86278258647735 0 1.5986198691406326 1.5228787452803376 0 0.3807196863200844 + + [YN]Q{[HG]|PP}{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F} 2.571 + + 46 + NaN NaN 111202.2 NaN 7616 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10354 50.571 NaN 221780 35 0 28326 0.261 + 4534 EYLERAPEL 9 65 560.288319611973 1118.5620862907458 2 560.27685546875 MULTI HCD FTMS 0 0 0 10347 22581.099609375 0.07409964258425916 8 -0.22204208374023438 7 Unmodified _EYLERAPEL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 26.268140514670165 0.13340543277302316 2 A[WE]P{M(Oxidation (M))|F}{I|L} 6 6 29.169 0 0 2.6077 0 0 357.1893788068375 0 357.1893788068375 0 20.21652514092061 0 0 0 0.4247425010840047 0 0.3494850021680094 0 A[WE]P{M(Oxidation (M))|F}{I|L} 2.6077 - 284 NaN NaN 131195.2 NaN 7617 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10355 50.575 NaN 343480 35 0 41812 0.261 + 19206 NIIREEAVL 9 77 528.8059194264779 1055.5972859197557 2 528.8057861328125 MULTI HCD FTMS 0 0 0 10347 59076.04296875 0.5710267705606522 -5 0.13808059692382812 8 Unmodified _NIIREEAVL_ ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1 24.990960013464015 0.14443998892849796 2 AV{I|L} 3 6 27.435 0 0 2.599 0 0 754.3943958966812 0 754.3943958966812 0 11.95046257204389 0 0 0 0.4247425010840047 0 0 0 + AV{I|L} 2.599 + + 74 NaN NaN 147754.8 NaN 7618 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10356 50.578 NaN 112060 35 0 10740 0.261 + 24797 RYPDRITLI 9 63 573.8350956172454 1145.6556383012908 2 573.8350830078125 MULTI HCD FTMS 0 0 0 10347 39266.734375 0.0186005793209916 33 -0.8454322814941406 9 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 4.897010918128616 0.31389406404703984 2 RYGD 4 6 23.443 0 0 2.0463 0 0 0 651.4175509088499 651.4175509088499 13.750612633917 0 0 0 0 0 0 0 0 RYGD 2.0463 - 45 + NaN NaN 115405.2 NaN 7619 2735 10347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10358 50.583 NaN 893120 35 0 74880 0.327 + 17120 LYLKVKGNVF 10 77 590.8580572297957 1179.7015615263913 2 590.858154296875 MULTI HCD FTMS 0 0 0 10357 464411.84375 0.9849009954796233 -3 0.08884048461914062 1 Unmodified _LYLKVKGNVF_ ENSG00000108298|ENST00000225430|RPL19;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF 107.1870275148908 5.4647617103297364E-05 2 {I|L}Y{I|L}KVKGNV{M(Oxidation (M))|F} 10 0 + 92.189 0 0 7.8146 7.8146 96.096 0 0 0 42.54379714207241 3.5121967796476383 3.5121967796476383 43.138181262758266 0 2.5969100130080562 2 0 1.0356668758921828 + + {I|L}Y{I|L}KVKGNV{M(Oxidation (M))|F};[Y{I|L}]{I|L}QQKK{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}QQK{I|L}K{M(Oxidation (M))|F};[K{I|L}]QQK{I|L}Y{I|L}{M(Oxidation (M))|F};[K{I|L}][AG]QK{I|L}Y{I|L}{M(Oxidation (M))|F};[K{I|L}]Q[AG]K{I|L}Y{I|L}{M(Oxidation (M))|F};[K{I|L}][AG][AG]K{I|L}Y{I|L}{M(Oxidation (M))|F};[K{I|L}]QQ[Y{I|L}]K{I|L}{M(Oxidation (M))|F};[K{I|L}]QQ[Y{I|L}]{I|L}K{M(Oxidation (M))|F};[K{I|L}]Q[AG][Y{I|L}]K{I|L}{M(Oxidation (M))|F} 7.8146;4.1579;4.0087;3.166;2.3854;2.3854;1.6086;1.2538;1.1046;0.47329 +;-;-;-;-;-;-;-;-;- + 329 + NaN NaN 232036.1 NaN 7620 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10359 50.587 NaN 323950 35 0 47970 0.261 + 15974 LPQHEEICL 9 51 541.2707119864826 1080.5268710397652 2 541.2710571289062 MULTI HCD FTMS 0 0 0 10357 184783.09375 0.8482815583808212 2 -0.05577850341796875 2 Unmodified _LPQHEEICL_ ENSG00000143624|ENST00000318967|INTS3;ENST00000481797.5_1_1:153701080-153719633:+|nuORF;nc|ENSG00000143624|Q68E01|INTS3 36.506200033944 0.08138327636155518 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEE{I|L}C{I|L} 9 3 + 72.379 0 0 6.6985 6.6985 85.444 0 0 0 22.46970615301926 66.43684392785687 22.46970615301926 0.7525749891599531 0 0.3807196863200844 1.2218487496163564 1.4291746928241125 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QEEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EQEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]EE{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]EEC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[AG]E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[AG]EC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}[{I|L}A]E{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}[{I|L}A]EC{I|L}{I|L} 6.6985;6.6288;6.6247;6.5551;5.8463;5.7766;5.7725;5.7029;5.069;4.9993 -;-;-;-;-;-;-;-;-;- 475 NaN NaN 130558.1 NaN 7621 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10360 50.591 NaN 342210 35 0 39550 0.261 + 34656 YPSLREAAL 9 62 510.2797523462883 1018.5449517593767 2 510.2793273925781 MULTI HCD FTMS 0 0 0 10357 162820.796875 0.595186556917269 -6 0.17099761962890625 3 Unmodified _YPSLREAAL_ chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4 40.23920728925047 0.06424668180817725 2 YPS{I|L} 4 5 61.428 0 0 6.0309 0 0 0 555.2897122566333 555.2897122566333 26.98584086510941 0 0 0 0 0.5 1.6989700043360187 0.75 0 + YPS{I|L} 6.0309 + + 86 + NaN NaN 143275.8 NaN 7622 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10361 50.594 NaN 152750 35 0 14582 0.261 + 21811 QAPYSRLL 8 45 474.2692091407155 946.523865348231 2 474.2690734863281 MULTI HCD FTMS 0 0 0 10357 100029.90625 0.6456316211662713 2 -0.05577850341796875 4 Unmodified _QAPYSRLL_ REV__ENST00000460238.1_1_2:165557257-165560995:-|nuORF 32.30548876998284 0.3297748069446609 2 {I|L}{I|L} 2 -1 22.959 0 0 2.4256 0 0 702.3459339826187 0 702.3459339826187 0 11.365006360318688 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4256 + + 9 NaN NaN 126279.6 NaN 7623 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10362 50.598 NaN 338040 35 0 56643 0.261 + 24853 RYQALFHDF 9 58 598.7958112307663 1195.5770695283325 2 598.7962646484375 MULTI HCD FTMS 0 0 0 10357 123375.7109375 0.7748309262129895 -1 0.032917022705078125 5 Unmodified _RYQALFHDF_ ENSG00000175073|ENST00000310421|VCPIP1 38.175570920033316 0.07371992880350783 2 A{I|L}{M(Oxidation (M))|F}HD{M(Oxidation (M))|F} 6 3 53.677 0 0 4.4896 0 0 447.22361952949376 0 447.22361952949376 0 38.97222222092239 0 0 0 1.7302046884880937 0 0 0 + A{I|L}{M(Oxidation (M))|F}HD{M(Oxidation (M))|F} 4.4896 + + 73 NaN NaN 136771.8 NaN 7624 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10363 50.601 NaN 112770 35 0 13633 0.261 + -1 SYMSYDEQL 9 54 576.2304412810768 1150.4463296289534 2 576.230712890625 MULTI HCD FTMS 0 0 0 10357 52804.25 0.47364559817435753 5 -0.131134033203125 6 Oxidation (M) _SYM(Oxidation (M))SYDEQL_ REV__ENSG00000122779|ENST00000343526|TRIM24;REV__nc|ENSG00000122779|O15164-2|TRIM24;REV__TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant 10.073929032068715 0.27331982688540024 2 D{I|L} 2 -1 24.464 0 0 2.1265 0 0 904.3443630420481 0 904.3443630420481 0 12.897131498072126 0 0 0 0.3494850021680094 0 0 0 D{I|L} 2.1265 - 38 NaN NaN 100968.6 NaN 7625 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10364 50.604 NaN 94774 35 0 10074 0.261 + 19532 NSGREDSENTF 11 40 628.265201071024 1254.5158492088478 2 628.2633056640625 MULTI HCD FTMS 0 0 0 10357 36196.6796875 0.5756461548649581 1 -0.02954864501953125 7 Unmodified _NSGREDSENTF_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 8.97624648632007 0.3788720818291249 2 QNT{M(Oxidation (M))|F} 4 8 41.186 0 0 3.283 0 0 746.2868519513687 0 746.2868519513687 0 40.80702170131058 0 0 0 0.9247425010840047 0 0 0 QNT{M(Oxidation (M))|F} 3.283 - 17 NaN NaN 95448.7 NaN 7626 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10365 50.608 NaN 366170 35 0 44250 0.262 + 15682 LPENITHAF 9 70 521.2714974756346 1040.5284420180692 2 521.2710571289062 MULTI HCD FTMS 0 0 0 10357 57267.58203125 1 0 0 8 Unmodified _LPENITHAF_ ENSG00000179314|ENST00000317744|WSCD1 10.073929032068715 0.27331982688540024 2 A{M(Oxidation (M))|F} 2 7 29.776 0 0 2.8617 0 0 804.4108923197473 0 804.4108923197473 0 15.172203223519531 0 0 0 0.8807196863200843 0 0 0 + A{M(Oxidation (M))|F} 2.8617 + + 18 NaN NaN 134042 NaN 7627 2736 10357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10367 50.613 NaN 7959700 35 0 1984200 0.327 + 24386 RYIPTAAAF 9 72 505.27681951727675 1008.5390861013535 2 505.2773132324219 MULTI HCD FTMS 0 0 0 10366 5025171 0.7867578366633585 1 -0.0262298583984375 1 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 96.11092074494114 0.00436583732602279 2 [Y{I|L}]RPTAAA{M(Oxidation (M))|F} 9 2 + 92.885 0 0 9.2098 9.2098 94.494 0 0 0 9.833333518428816 14.018637558036687 9.833333518428816 9.833333518428816 0 2.5 1.2218487496163564 1.6237125054200234 0 [Y{I|L}]RPTAAA{M(Oxidation (M))|F};[YR]{I|L}PTAAA{M(Oxidation (M))|F};[Y{I|L}]RPTAA{M(Oxidation (M))|F}A;[Y{I|L}]PRTAAA{M(Oxidation (M))|F};[YR]{I|L}PTAA{M(Oxidation (M))|F}A;[Y{I|L}]PRTAA{M(Oxidation (M))|F}A;[HV][VP]PTAAA{M(Oxidation (M))|F};[Y{I|L}]R[SG][VP]A{M(Oxidation (M))|F};[Y{I|L}]RPT{[NV]|[RG]}{M(Oxidation (M))|F};[YR]{I|L}[SG][VP]A{M(Oxidation (M))|F} 9.2098;8.2348;7.8198;7.8186;6.8448;6.4286;6.1973;5.2872;5.173;4.3122 -;+;-;-;-;-;-;-;-;- + 517 NaN NaN 647115.4 NaN 7628 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10368 50.617 NaN 2165800 35 0 450210 0.261 + 15494 LPDMVVSHL 9 104 513.767869625976 1025.521186318752 2 513.7679443359375 MULTI HCD FTMS 0 0 0 10366 1191736.25 1 0 0 2 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 164.5152109175784 6.8106583686994766E-09 2 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 118.34 0 0 11.539 11.539 97.744 0 0 0 76.72057301750564 8.748162098248997 8.748162098248997 23.126910268853834 0 2.885151878060192 1.6989700043360187 1.7881068352144718 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}V[HS]V{I|L};{[{M(Oxidation (M))|F}D]|MM}VP{I|L}VSH{I|L} 11.539;9.284;7.0179;6.6143;6.4321;6.4321;6.0707;6.0707;5.782;5.7771 +;+;-;-;-;-;-;-;-;- + 2634 + NaN NaN 418764.2 NaN 7629 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10369 50.621 NaN 536530 35 0 94055 0.261 + 15776 LPGHGTSPLL 10 66 496.2820675782316 990.5495822232632 2 496.27191162109375 MULTI HCD FTMS 0 0 0 10366 6404.82568359375 0.09419597205434248 6 -0.159576416015625 3 Unmodified _LPGHGTSPLL_ REV__ENST00000392495.7_1_12:121206768-121206894:-|nuORF 7.289230182591677 0.43672065049472153 2 {I|L}{[MG]|[TS]}{[C(Carbamidomethyl (C))G]|[NC]}P{I|L}{I|L} 8 -1 17.637 0 0 1.7805 0 0 131.11648826128993 0 131.11648826128993 0 2.152274865413734 0 0 0 0.5 0 0.7742275032520141 0 {I|L}{[MG]|[TS]}{[C(Carbamidomethyl (C))G]|[NC]}P{I|L}{I|L} 1.7805 - 87 + NaN NaN 161101.8 NaN 7630 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10370 50.624 NaN 445430 35 0 69343 0.261 -1 FPLMPVVGR 9 84 516.2898626681636 1030.565172403127 2 516.7896728515625 MULTI HCD FTMS 0 0 0 10366 143183.90625 0.6494161238253043 -4 0.11838912963867188 4 Oxidation (M) _FPLM(Oxidation (M))PVVGR_ ENSG00000197563|ENST00000640252|PIGN 9.347437153973935 0.2795965555214564 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V 3 -1 19.666 0 0 1.9083 0 0 0 684.3536605225207 684.3536605225207 1.2224122066494694 0 0 0 0 0 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V 1.9083 + + 71 NaN NaN 155618.4 NaN 7631 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10371 50.627 NaN 136700 35 0 8197.5 0.261 + 24413 RYKLYQEMF 9 47 639.3208791657722 1276.6272053983444 2 639.3213500976562 MULTI HCD FTMS 0 0 0 10366 59309.4609375 0.8166826741230431 1 -0.0262298583984375 5 Unmodified _RYKLYQEMF_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 8.745405648335112 0.2847203663274469 2 QEM{M(Oxidation (M))|F} 4 5 31.938 0 0 2.5018 0 0 723.4068080484128 0 723.4068080484128 0 31.938200260161125 0 0 0 0 0 0 0 + QEM{M(Oxidation (M))|F} 2.5018 + + 10 NaN NaN 102478.7 NaN 7632 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10372 50.63 NaN 164440 35 0 22239 0.262 -1 MPSERCLSI 9 53 526.2484608998653 1050.4823688665306 2 526.2485961914062 MULTI HCD FTMS 0 0 0 10366 42063.73046875 0.6321323405013213 -3 0.09212493896484375 6 Oxidation (M) _M(Oxidation (M))PSERCLSI_ ENSG00000186231|ENST00000369261|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;nc|ENSG00000186231|Q96NJ5-3|KLHL32 10.073929032068715 0.27331982688540024 2 S[EP] 3 -1 17.932 0 0 1.707 0 0 719.3626152787175 0 719.3626152787175 0 8.979400086720377 0 0 0 0.8494850021680094 0 0.3494850021680094 0 S[EP] 1.707 - 52 NaN NaN 109958.2 NaN 7633 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10373 50.634 NaN 61106 35 0 7687 0.261 + -1 ECHYSCTEL 9 34 571.2179437382692 1140.4213345433384 2 571.2185668945312 MULTI HCD FTMS 0 0 0 10366 23229.63671875 0.3726922663052126 4 -0.10158538818359375 7 Carbamidomethyl (C) _EC(Carbamidomethyl (C))HYSCTEL_ REV__TNN|p.C155Y|1|0.15|ENSG00000120332|chr1:175079387-175079387|G/A|missense_variant 1.844237919475145 0.33703635659052655 2 E{I|L} 2 -1 20.969 0 0 1.8387 0 0 880.2826531226368 0 880.2826531226368 0 13.010299956639813 0 0 0 0 0 0 0 E{I|L} 1.8387 + + 7 NaN NaN 99757.9 NaN 7634 2737 10366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10375 50.639 NaN 618930 35 0 75957 0.327 + 13023 KYITDVVKL 9 92 539.828847134775 1077.6431413363498 2 539.8291625976562 MULTI HCD FTMS 0 0 0 10374 345542.9375 0.7254141501031008 -1 0.0262298583984375 1 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 147.24064527209634 1.1743253965278724E-05 2 [YK]{I|L}TDVVK{I|L} 9 0 + 85.05 0 0 7.8922 7.8922 88.014 0 0 0 4.532796692927263 1.7609125905567993 1.7609125905567993 1.7609125905567993 0 2.6549471895720984 0 0.9247425010840047 1.6733937431123282 + + [YK]{I|L}TDVVK{I|L};[YK]{I|L}TDVV{I|L}K;KY{I|L}TDVVK{I|L};{I|L}[YK]TDVVK{I|L};{[QN]|[E{I|L}]|[KN]}AT[Y{I|L}]KK{I|L};{[QN]|[E{I|L}]|[KN]}AT[Y{I|L}]K{I|L}K;{[QN]|[E{I|L}]|[KN]}AT[K{I|L}]YK{I|L};{[QN]|[E{I|L}]|[KN]}AT[K{I|L}]Y{I|L}K 7.8922;7.7288;7.4716;5.8031;1.7138;1.5504;1.4345;1.2711 +;-;+;-;-;-;-;- + 545 NaN NaN 178124.5 NaN 7635 2738 10374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10376 50.643 NaN 95810 35 0 7768.7 0.261 -1 AYKHTVEDM 9 43 555.2481518351516 NaN 0 555.2579345703125 PEAK HCD FTMS 0 0 0 10374 4910.9794921875 0.40465795236844543 -1 0.0262298583984375 2 Oxidation (M) _AYKHTVEDM(Oxidation (M))_ FAM184A|p.R135T|1|0.36|ENSG00000111879|chr6:119024569-119024569|C/G|missense_variant 10.823927491677226 0.2427956001690155 2 T 1 -1 10.485 0 0 0.94585 0 0 165.05763071932807 839.3492515121354 1004.4068822314634 0 0 0 0 0 0 0 0.5 0 T 0.94585 + + 5 + NaN NaN 102637.3 NaN 7636 2738 10374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10377 50.647 NaN 188980 35 0 29986 0.261 -1 LSPEHNYLM 9 52 560.2608799955445 NaN 0 560.2783203125 PEAK HCD FTMS 0 0 0 10374 15686.7587890625 0.8075518209434666 2 -0.042469024658203125 3 Oxidation (M) _LSPEHNYLM(Oxidation (M))_ ENSG00000204195|ENST00000374521|AWAT1 5.230669730166228 0.26989974671959066 2 {M(Oxidation (M))|F}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 5 -1 11.95 0 0 1.0684 0 0 131.05878316129377 304.14130579166255 435.2000889529563 0 0 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 1.0684 - 25 + NaN NaN 119337.3 NaN 7637 2738 10374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10378 50.65 NaN 66474 35 0 5834 0.261 + 34468 YPFDGHNEGTL 11 41 625.2778567257716 1248.541160518343 2 625.2775268554688 MULTI HCD FTMS 0 0 0 10374 42609.8828125 0.5516176596863018 4 -0.09420013427734375 4 Unmodified _YPFDGHNEGTL_ ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93236.7 NaN 7638 2738 10374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10379 50.653 NaN 124910 35 0 10346 0.261 + 34368 YPEGFEIHSM 10 58 613.2633945636383 1224.5122361940764 2 613.2635498046875 MULTI HCD FTMS 0 0 0 10374 47514.17578125 0.16000395944267884 21 -0.5435981750488281 5 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 92.65332237495696 0.000798763162112469 2 YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F} 10 0 + 95.971 0 0 7.8375 7.8375 96.41 0 0 0 78.80387817565364 10.254537344402905 10.254537344402905 52.20745045211479 0 1.6791746928241125 1.5228787452803376 1.5356668758921828 0 + + YPEG{M(Oxidation (M))|F}E{I|L}HS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}GE{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[W{M(Oxidation (M))|F}]{I|L}E{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HS]{M(Oxidation (M))|F}[VS]EPY 7.8375;3.5739;2.3536;2.0244 +;-;-;- + 290 + NaN NaN 105608.6 NaN 7639 2738 10374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10381 50.658 NaN 444610 35 0 55461 0.326 + 18588 MVSDEYEQL 9 63 565.2395762659492 1128.4645995986982 2 565.2394409179688 MULTI HCD FTMS 0 0 0 10380 264202.28125 0.2681468555688455 6 -0.17306900024414062 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 78.14939416004806 0.006451203201226903 2 EYEQ{I|L} 5 4 57.206 0 0 5.0694 0 0 448.1615162580094 0 448.1615162580094 0 39.286662482156345 0 0 0 1 0 1.274227503252014 0 + EYEQ{I|L} 5.0694 + + 126 NaN NaN 159977.9 NaN 7640 2739 10380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10382 50.663 NaN 293160 35 0 29887 0.261 + 35840 YYQHIVTTL 9 69 569.3004454356236 1136.586337938047 2 569.3004150390625 MULTI HCD FTMS 0 0 0 10380 103249.7265625 0.113708225366445 9 -0.24196243286132812 2 Unmodified _YYQHIVTTL_ ENSG00000116005|ENST00000433351|PCYOX1;nc|ENSG00000116005|Q9UHG3-2|PCYOX1 60.07390631473393 0.0174780869009295 2 YYQ[H{I|L}]VTT{I|L} 9 0 + 64.472 0 0 5.6724 5.6724 87.405 0 0 0 13.868191675192875 37.02494496375269 13.868191675192875 9.208187539523742 0 1.75 1.6989700043360187 0.805462187404089 0 + + YYQ[H{I|L}]VTT{I|L};YY[AG][H{I|L}]VTT{I|L};{[QN]|[E{I|L}]|[KN]}[W{I|L}]YVTT{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}[Y{I|L}]TT{I|L};YY[R{I|L}][EP]{I|L}[PS] 5.6724;4.8623;3.9256;2.5194;0.91579 +;-;-;-;- + 303 NaN NaN 129797.3 NaN 7641 2739 10380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10383 50.666 NaN 166110 35 0 22434 0.261 + -1 INYDCVWNKFL 11 46 491.2395206806744 1470.6967326422232 3 491.2396240234375 MULTI HCD FTMS 0 0 0 10380 20834.87890625 0.39337438037990213 5 -0.14009475708007812 3 Carbamidomethyl (C) _INYDC(Carbamidomethyl (C))VWNKFL_ REV__ENST00000549766.5_1_9:101891293-101891362:+|nuORF 1.214830529360525 0.41359283248740725 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.4952 0 0 1305.6510305931981 0 1305.6510305931981 0 2.5257498915995313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.4952 + + 7 + NaN NaN 103508.9 NaN 7642 2739 10380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10384 50.67 NaN 141500 35 0 14284 0.261 -1 KYAMMFAEL 9 47 568.2615780253091 1134.508603117418 2 568.26123046875 MULTI HCD FTMS 0 0 0 10380 39858.4609375 0.15040675021635838 -18 0.5060348510742188 4 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 10.073929032068715 0.27331982688540024 2 AE{I|L} 3 -1 28.94 0 0 2.5509 0 0 803.3312855451187 0 803.3312855451187 0 12.74227503252014 0 0 0 0.4247425010840047 0 0 0 AE{I|L} 2.5509 + + 42 NaN NaN 107270.3 NaN 7643 2739 10380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10385 50.673 NaN 88757 35 0 6967.5 0.261 -1 QPMDIHVEL 9 41 549.2683261307061 1096.522099328212 2 549.2682495117188 MULTI HCD FTMS 0 0 0 10380 45565.8203125 0.9289297118863361 -7 0.19380950927734375 5 Oxidation (M) _QPM(Oxidation (M))DIHVEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 7.289230182591677 0.29575926068275815 2 WWD{I|L} 4 -1 13.188 0 0 1.2027 0 0 0 493.24174235845953 493.24174235845953 2.730012720637374 0 0 0 0 0 0 0 0 WWD{I|L} 1.2027 - 23 + NaN NaN 94568.5 NaN 7644 2739 10380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10386 50.676 NaN 98764 35 0 5409.4 0.261 -1 0 34 493.4750372837125 NaN 0 493.4412841796875 PEAK HCD FTMS 0 0 0 10380 21738.55859375 1 0 0 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87972.4 NaN 7645 2739 10380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10388 50.681 NaN 632450 35 0 58194 0.327 + 35331 YWMHVQNTF 9 101 621.2741052049596 1240.533657476719 2 621.2741088867188 MULTI HCD FTMS 0 0 0 10387 308095.75 0.8480786871527795 4 -0.11717987060546875 1 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 172.90653553480564 2.2447970467336844E-09 2 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 85.278 0 0 6.8743 6.8743 90.047 0 0 0 38.76550885621654 24.97798612055211 24.97798612055211 9.208187539523749 0 2.4564608101803795 1.3979400086720375 1.916386562212267 1.2218487496163564 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}[VG][HA]NT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][HC]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QNT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))S]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[MT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TT{M(Oxidation (M))|F};{[QS]|[NT]}{[QV]|[N{I|L}]|[RA]|[KV]}C(Carbamidomethyl (C))WWT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[HG]|PP}H{M(Oxidation (M))|F}{M(Oxidation (M))|F}TT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[NS]{M(Oxidation (M))|F} 6.8743;6.1321;5.8503;4.4372;3.2091;2.9691;2.9422;1.9725;1.9572;1.8185 +;-;-;-;-;-;-;-;-;- + 5433 + NaN NaN 183520.5 NaN 7646 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10389 50.686 NaN 169400 35 0 13082 0.261 -1 HYMPPPYASL 10 53 596.2789078588603 1190.5432627845205 2 596.2948608398438 MULTI HCD FTMS 0 0 0 10387 35182.55859375 0.48213665140756784 5 -0.15015411376953125 2 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant 26.88365393820708 0.25965138844209146 2 AS{I|L} 3 -1 33.188 0 0 2.7876 0 0 901.3781019386943 0 901.3781019386943 0 3.516740735028847 0 0 0 0.4247425010840047 0 0.4247425010840047 0 AS{I|L} 2.7876 + + 64 NaN NaN 113495.1 NaN 7647 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10390 50.689 NaN 132190 35 0 15686 0.261 + 9620 HTDPVDYEF 9 42 561.7407217051592 NaN 0 561.741455078125 PEAK HCD FTMS 0 0 0 10387 51592.6171875 1 0 0 3 Unmodified _HTDPVDYEF_ ENSG00000185115|ENST00000332303|NSMCE3 30.636539890814138 0.11600348607007434 2 DYE 3 6 26.655 0 0 2.3768 0 0 549.2573700687184 162.05585657291252 711.3132266416309 0 0 0 0 0 1.5 0 0.5 0 + DYE 2.3768 + + 9 + NaN NaN 111849 NaN 7648 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10391 50.693 NaN 283900 35 0 69044 0.261 + 10755 IRYELIARA 9 58 552.8298034093027 1103.6450538854053 2 552.8306884765625 MULTI HCD FTMS 0 0 0 10387 51860.2421875 0.24930499601411618 -4 0.09824752807617188 4 Unmodified _IRYELIARA_ REV__ATHL1|p.R327C|1|0.47|ENSG00000142102|chr11:292048-292048|C/T|missense_variant;REV__ENSG00000142102|ENST00000409548|PGGHG;REV__ENST00000474221.5_1_11:291984-293434:+|nuORF;REV__ENST00000476372.1_1_11:291984-293434:+|nuORF 17.11289562659939 0.2125047172822487 2 {I|L}R 2 -1 21.722 0 0 1.9682 0 0 0 831.4381197565061 831.4381197565061 3.049537427956107 0 0 0 0 0 0 0 0.4247425010840047 {I|L}R 1.9682 + + 40 + NaN NaN 132123.6 NaN 7649 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10392 50.696 NaN 88052 35 0 6966 0.261 + 19533 NSGREDSENTF 11 45 628.265201071024 1254.5158492088478 2 628.2653198242188 MULTI HCD FTMS 0 0 0 10387 30047.162109375 0.47784861711608567 5 -0.15015411376953125 5 Unmodified _NSGREDSENTF_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 9.5439744041441 0.373925449867384 2 NT{M(Oxidation (M))|F} 3 8 34.693 0 0 2.7654 0 0 874.3397252640073 0 874.3397252640073 0 29.20818753952375 0 0 0 0.4247425010840047 0 0.4247425010840047 0 + NT{M(Oxidation (M))|F} 2.7654 + + 5 NaN NaN 95621.6 NaN 7650 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10393 50.699 NaN 200750 35 0 69365 0.264 + -1 LWPWICGLWH 10 47 456.561744017598 1366.6634026529941 3 456.5618591308594 MULTI HCD FTMS 0 0 0 10387 27945.751953125 0.6093285507671125 -1 0.022914886474609375 6 Carbamidomethyl (C) _LWPWIC(Carbamidomethyl (C))GLWH_ REV__ENST00000591806.5_1_19:1377445-1377805:+|nuORF 4.189502756095605 0.45312800054222196 2 {I|L}W 2 -1 42.959 0 0 3.1433 0 0 0 1064.4760569931796 1064.4760569931796 35.96910013008056 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}W 3.1433 + + 10 + NaN NaN 115325.8 NaN 7651 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10394 50.703 NaN 208450 35 0 19809 0.261 + 28931 TWVGLQACTSF 11 75 404.8613257278114 1211.5621477836341 3 404.8602294921875 MULTI HCD FTMS 0 0 0 10387 56500.3203125 1 0 0 7 Unmodified _TWVGLQACTSF_ REV__ENST00000340648.5_1_21:45113746-45114010:+|nuORF 2.6312355333042263 0.4073809613003177 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2781 0 0 1046.4831815744528 0 1046.4831815744528 0 6.1928031367991565 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2781 + + 32 + NaN NaN 125986 NaN 7652 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10395 50.706 NaN 33436 35 0 4595.1 0.261 + 10867 IVQGPDPNL 9 25 476.758648700512 951.5027444678241 2 476.75872802734375 MULTI HCD FTMS 0 0 0 10387 16035.20703125 0.029933401200634036 13 -0.34366607666015625 8 Unmodified _IVQGPDPNL_ ENSG00000109180|ENST00000264312|OCIAD1 5.731851221503515 0.3075653528928475 2 [WR]{M(Oxidation (M))|F} 3 9 11.695 0 0 1.2291 0 0 0 459.2279451959594 459.2279451959594 4.392653074926047 0 0 0 0 0.4247425010840047 0 0 0 [WR]{M(Oxidation (M))|F} 1.2291 - 6 + NaN NaN 86316.6 NaN 7653 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10396 50.709 NaN 39253 35 0 5450.5 0.261 -1 YMCVLCGKQF 10 39 435.8655090332031 NaN 0 435.8655090332031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Carbamidomethyl (C) _YMC(Carbamidomethyl (C))VLC(Carbamidomethyl (C))GKQF_ ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9-2|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772 0.776531954647913 0.3395196853010637 2 R 1 -1 6.9897 0 0 0.80368 0 0 300.46835243965 410.1367281549438 710.6050805945938 0 0 0 0 0 0 0 0 0 R 0.80368 - 1 + NaN NaN 88606.5 NaN 7654 2740 10387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10398 50.714 NaN 184010 35 0 31309 0.327 + -1 EYTFKCPF 8 55 546.2492827123775 NaN 0 546.2312622070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _EYTFKC(Carbamidomethyl (C))PF_ REV__ENST00000395002.6_1_4:89744147-89744438:-|nuORF 5.760428011301431 0.38822285293237185 2 D{M(Oxidation (M))|F}E 3 -1 15.467 0 0 1.4184 0 0 131.13055828082082 565.2226656549436 696.3532239357644 0 0 0 0 0 0 0 0.3494850021680094 0 D{M(Oxidation (M))|F}E 1.4184 - 22 + NaN NaN 115272.5 NaN 7655 2741 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10399 50.719 NaN 744040 35 0 224170 0.263 + 27472 SYVWRTYHL 9 66 408.8767542074316 1223.6084332224948 3 409.21087646484375 MULTI HCD FTMS 0 0 0 10397 123706.4453125 0.5353958719158083 -3 0.07535552978515625 2 Unmodified _SYVWRTYHL_ ENSG00000161981|ENST00000293861|SNRNP25;ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;nc|ENSG00000161981|Q9BV90|SNRNP25 16.149105407346934 0.22083165093524068 2 SYV 3 6 54.693 0 0 4.4698 0 0 0 871.4208343239907 871.4208343239907 42.21848749616356 0 0 0 0 0.8494850021680094 2 0 0 + SYV 4.4698 + + 65 + NaN NaN 196625 NaN 7656 2741 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10400 50.722 NaN 153100 35 0 54802 0.261 + -1 QPCTEQLPM 9 43 531.7326658964815 1061.450778859763 2 531.7327880859375 MULTI HCD FTMS 0 0 0 10397 44054.41015625 0.30391253063127754 5 -0.13694000244140625 3 Oxidation (M) _QPCTEQLPM(Oxidation (M))_ REV__ENSG00000121446|ENST00000294854|RGSL1;REV__nc|ENSG00000121446|A5PLK6-6|RGSL1 1.844237919475145 0.33703635659052655 2 S 1 -1 2.2185 0 0 0.20901 0 0 561.7474535197224 409.6449373834594 971.3923909031819 0 0 0 0 0 0 0 0 0 S 0.20901 - 1 + NaN NaN 130718.2 NaN 7657 2741 10397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10402 50.733 NaN 566250 35 0 43093 0.327 + 5110 FELKIFDRL 9 77 590.83994207774 NaN 0 590.858154296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FELKIFDRL_ REV__ENSG00000076513|ENST00000261739|ANKRD13A 25.399314129420986 0.1511568710901456 2 Y{I|L}KV 4 -1 27.423 0 0 2.3246 0 0 113.04928021160443 560.2828536747968 673.3321338864013 0 0 0 0 0 0 0 0 0.6989700043360187 Y{I|L}KV 2.3246 - 255 + NaN NaN 178498.6 NaN 7658 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10403 50.737 NaN 467340 35 0 53281 0.261 + 34657 YPSLREAAL 9 78 510.2797523462883 1018.5449517593767 2 510.279541015625 MULTI HCD FTMS 0 0 0 10401 273562.625 1 0 0 2 Unmodified _YPSLREAAL_ chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4 74.19965305603844 0.007729275404663812 2 YPS{I|L} 4 5 64.68 0 0 6.3503 0 0 0 555.2898043268186 555.2898043268186 28.764100213633768 0 0 0 0 0.8252574989159953 1.6989700043360187 0.75 0 + YPS{I|L} 6.3503 + + 169 + NaN NaN 155951.3 NaN 7659 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10404 50.741 NaN 497930 35 0 30300 0.261 + 22945 QYVDFHNQL 9 83 582.2775725251065 1162.540592117013 2 582.277099609375 MULTI HCD FTMS 0 0 0 10401 165176.984375 0.16539759375301769 -5 0.12042999267578125 3 Unmodified _QYVDFHNQL_ ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 114.6490535036381 0.0021834323520089267 2 [YQ]VD{M(Oxidation (M))|F}HNQ{I|L} 9 0 + 60.493 0 0 5.2035 5.2035 86.634 0 0 0 37.51716928787452 1.2082507635561157 1.2082507635561157 9.208187539523742 0 1.173877368056628 1.0457574905606752 0 1.6368617341927687 + + [YQ]VD{M(Oxidation (M))|F}HNQ{I|L};[YQ]VD{M(Oxidation (M))|F}HGGQ{I|L};YY[KS]VM{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 5.2035;4.4114;1.6643 +;-;- + 1556 + NaN NaN 168123.8 NaN 7660 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10405 50.744 NaN 315880 35 0 21951 0.261 -1 FVMMKQQL 8 70 528.7634843099333 1055.5124156866666 2 528.7639770507812 MULTI HCD FTMS 0 0 0 10401 93013.4140625 0.7088612260125507 -2 0.051731109619140625 4 2 Oxidation (M) _FVM(Oxidation (M))M(Oxidation (M))KQQL_ ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1 30.224811164608877 0.3565035853404968 2 EGAQ{I|L} 5 -1 48.201 0 0 4.5666 0 0 539.2582478659175 0 539.2582478659175 0 28.815599996832827 0 0 0 1 0 0 0.3252574989159953 EGAQ{I|L} 4.5666 - 148 NaN NaN 130792.1 NaN 7661 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10406 50.747 NaN 313990 35 0 40474 0.261 + 22000 QFDVATHL 8 58 465.7374893003657 929.4604256675315 2 465.7368469238281 MULTI HCD FTMS 0 0 0 10401 102543.3828125 0.8008985917165374 -2 0.051731109619140625 5 Unmodified _QFDVATHL_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF 42.09456458481378 0.20402248593209013 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVATH{I|L} 8 0 + 33.664 0 0 3.6219 3.6219 82.738 0 0 0 5.251903433986126 5.251903433986126 5.251903433986126 5.251903433986126 0 0.6747425010840047 0 0.2302046884880938 0 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVATH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}D{[VA]|[{I|L}G]}G[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}G[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}D{[VA]|[{I|L}G]}QQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[RE]|[WV]}QQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}P{[MG]|[TS]}G[QA]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}P{[MG]|[TS]}QQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}D{[QV]|[N{I|L}]|[RA]|[KV]}[QA]{I|L};[H{I|L}][YE]G[QA]{I|L};[H{I|L}][YE]QQ{I|L} 3.6219;3.0568;3.0076;2.8732;2.8313;2.7953;2.6117;2.3598;1.1797;1.0034 +;-;-;-;-;-;-;-;-;- + 192 + NaN NaN 126878.2 NaN 7662 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10407 50.751 NaN 208220 35 0 17067 0.261 + 35841 YYQHIVTTL 9 63 569.3004454356236 1136.586337938047 2 569.8029174804688 MULTI HCD FTMS 0 0 0 10401 37479.2265625 0.0629356115148686 12 -0.3148460388183594 6 Unmodified _YYQHIVTTL_ ENSG00000116005|ENST00000433351|PCYOX1;nc|ENSG00000116005|Q9UHG3-2|PCYOX1 58.678817012210395 0.019429721296335044 2 VTT{I|L} 4 5 42.964 0 0 3.7801 0 0 704.3290272443375 0 704.3290272443375 0 33.672137691284405 0 0 0 1 0 0.8807196863200843 0 + VTT{I|L} 3.7801 + + 62 NaN NaN 125744.4 NaN 7663 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10408 50.754 NaN 132370 35 0 68547 0.262 -1 0 43 453.2305408934691 452.2232644268691 1 453.2302551269531 MULTI HCD FTMS 0 0 0 10401 44292.125 0.6054635111977907 6 -0.16731643676757812 7 NaN NaN 2 {[WT]|[RM]}{M(Oxidation (M))|F} 3 -1 {[WT]|[RM]} + + 15.485 1.0033 0.34941 3.4241 3.4241 60.4 0 0 0 0 15.484550065040281 0 0 0 0 0 0 0 {[WT]|[RM]}{M(Oxidation (M))|F} 3.4241 - 1 + NaN NaN 103352.1 NaN 7664 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10409 50.757 NaN 134500 35 0 7322 0.261 + -1 CDFLNWGNTF 10 46 637.2687837379588 1272.5230145427174 2 637.26904296875 MULTI HCD FTMS 0 0 0 10401 34546.45703125 0.5720617668591114 5 -0.15099716186523438 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFLNWGNTF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 10.799506525563784 0.4100970765206026 2 QNT{M(Oxidation (M))|F} 4 -1 39.993 0 0 3.1428 0 0 764.2940579111503 0 764.2940579111503 0 36.01342204748164 0 0 0 0.805462187404089 0 0 0 QNT{M(Oxidation (M))|F} 3.1428 - 13 NaN NaN 104603.7 NaN 7665 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10410 50.761 NaN 107310 35 0 10983 0.261 + 6086 FPEERPEVL 9 44 558.2904067620761 NaN 0 558.289794921875 PEAK HCD FTMS 0 0 0 10401 17372.630859375 0.5157746151863919 -14 0.37355804443359375 9 Unmodified _FPEERPEVL_ ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 4.897010918128616 0.2715166107592903 2 Q{I|L} 2 8 9.464 0 0 0.84912 0 0 130.10472602239594 740.2829073541624 870.3876333765584 0 0 0 0 0 0 0 0 0 Q{I|L} 0.84912 - 14 + NaN NaN 107362.3 NaN 7666 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10411 50.764 NaN 43804 35 0 5260.6 0.261 + 16907 LYGDKWNSFT 10 31 615.7933260306971 1229.5720991281942 2 615.7944946289062 MULTI HCD FTMS 0 0 0 10401 22863.041015625 0.8354594975599702 1 -0.03914642333984375 10 Unmodified _LYGDKWNSFT_ ENSG00000254685|ENST00000370898|FPGT;ENST00000533006.1_1_1:74663962-74715145:+|nuORF;nc|ENSG00000116783|Q59H18-1|TNNI3K;nc|ENSG00000116783|Q59H18-3|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000254685|O14772-2|FPGT;nc|ENSG00000254685|O14772-3|FPGT;nc|ENSG00000254685|O14772|FPGT 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88989 NaN 7667 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10412 50.767 NaN 91723 35 0 18903 0.263 + 16377 LSEWHSVL 8 37 485.7534841156055 969.492415298011 2 485.75347900390625 MULTI HCD FTMS 0 0 0 10401 21068.958984375 0.22711171885855766 -8 0.212554931640625 11 Unmodified _LSEWHSVL_ REV__ENST00000249837.7_1_15:62306190-62315620:-|nuORF 2.302733041254933 0.5385759549224092 2 V{I|L} 2 -1 20.969 0 0 2.1629 0 0 739.3293755881782 0 739.3293755881782 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.1629 + + 1 NaN NaN 107727.9 NaN 7668 2742 10401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10414 50.772 NaN 1856800 35 0 439730 0.327 + 24387 RYIPTAAAF 9 88 505.27681951727675 1008.5390861013535 2 505.2770690917969 MULTI HCD FTMS 0 0 0 10413 927387.5625 0.14519494608661182 7 -0.16405868530273438 1 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 78.7280429016045 0.006263961847259105 2 [YR]{I|L}[TP]AAA{M(Oxidation (M))|F} 9 0 + 71.756 0 0 7.1149 7.1149 88.211 0 0 0 3.65279269351241 62.71529987308661 3.65279269351241 5.805300040193018 0 2.586696871556164 0 1.0994850021680094 0 + + [YR]{I|L}[TP]AAA{M(Oxidation (M))|F};[Y{I|L}]R[TP]AAA{M(Oxidation (M))|F};[HV][VP][TP]AAA{M(Oxidation (M))|F};[YR]{I|L}[SG][VP]A{M(Oxidation (M))|F};[YR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VP]A{M(Oxidation (M))|F};[Y{I|L}]R[SG][VP]A{M(Oxidation (M))|F};[YR]{I|L}[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]R[SG]{I|L}[PG]{M(Oxidation (M))|F};[YR]{I|L}[SG]{I|L}[PG]{M(Oxidation (M))|F} 7.1149;6.5393;5.0205;4.378;4.2315;3.8024;3.3696;2.7939;2.6136;2.5442 +;-;-;-;-;-;-;-;-;- + 292 NaN NaN 361738.2 NaN 7669 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10415 50.777 NaN 563390 35 0 116940 0.261 + 15495 LPDMVVSHL 9 83 513.767869625976 1025.521186318752 2 513.7681274414062 MULTI HCD FTMS 0 0 0 10413 249892.40625 0.20968767732793225 6 -0.147735595703125 2 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 111.28704002717404 0.0027322905094575235 2 {I|L}PD{M(Oxidation (M))|F}VVSH{I|L} 9 0 + 112.76 0 0 10.995 10.995 97.962 0 0 0 94.27993691222191 10.642492736872597 10.642492736872597 26.187718690714377 0 2.7346368802282015 2 1.079689690656103 0 + + {I|L}PD{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D{M(Oxidation (M))|F}VVSH{I|L};[{I|L}P]D[MT]{I|L}SH{I|L};[DP]{I|L}{M(Oxidation (M))|F}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}VVSH{I|L};[DP]{M(Oxidation (M))|F}{I|L}VVSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PV{I|L}VSH{I|L};[DP]{M(Oxidation (M))|F}V{I|L}VSH{I|L};{[{M(Oxidation (M))|F}D]|MM}PVV{I|L}SH{I|L};[DP]{M(Oxidation (M))|F}VV{I|L}SH{I|L} 10.995;8.4415;6.5186;5.5884;4.9852;4.7862;4.5749;4.3758;3.9156;3.7166 +;+;-;-;-;-;-;-;-;- + 635 + NaN NaN 181800.8 NaN 7670 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10416 50.78 NaN 277560 35 0 41541 0.261 + 9188 HPLHDFIL 8 58 496.2716297896494 990.5287066460988 2 496.2715148925781 MULTI HCD FTMS 0 0 0 10413 82891.9765625 0.3500304366461178 8 -0.19699478149414062 3 Unmodified _HPLHDFIL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 24.67388899826682 0.4122521268485776 2 {I|L}QQ{M(Oxidation (M))|F}{I|L}{I|L} 6 4 31.471 0 0 3.1772 0 0 230.08958632636876 0 230.08958632636876 0 14.4812969097282 0 0 0 1.305462187404089 0 0 0 {I|L}QQ{M(Oxidation (M))|F}{I|L}{I|L} 3.1772 - 56 NaN NaN 137766.4 NaN 7671 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10417 50.783 NaN 239210 35 0 23293 0.261 + 27474 SYVWRTYHL 9 70 612.8115180587037 1223.6084831842072 2 612.8113403320312 MULTI HCD FTMS 0 0 0 10413 69992.2734375 0.9179139618855624 1 -0.026302337646484375 4 Unmodified _SYVWRTYHL_ ENSG00000161981|ENST00000293861|SNRNP25;ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;nc|ENSG00000161981|Q9BV90|SNRNP25 27.223235318498237 0.1251536255799991 2 {[{M(Oxidation (M))|F}C]|[YS]}VWR[YT]H{I|L} 9 0 + 26.36 0 0 2.1543 2.1543 87.866 0 0 0 1.5841654116560768 3.635490032964878 1.5841654116560768 26.360462404937483 0 1.6237125054200234 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VWR[YT]H{I|L} 2.1543 + + 83 NaN NaN 124410.2 NaN 7672 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10418 50.787 NaN 120180 35 0 8269.4 0.261 -1 0 45 607.0376589450408 2424.121529913763 4 607.2885131835938 MULTI HCD FTMS 0 0 0 10413 19750.951171875 0.47440040637343517 10 -0.2527885437011719 5 NaN NaN 2 E{I|L}A 3 -1 8.4164 0 0 0.34719 0 0 1342.6154548100824 765.3176363580686 2107.933091168151 0 0 0 0 0 0 0 0 0 E{I|L}A 0.34719 - 12 + NaN NaN 102135.5 NaN 7673 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10419 50.79 NaN 136650 35 0 17164 0.261 -1 0 37 635.0456834320346 NaN 0 634.807373046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 R 1 -1 2.4743 0 0 0.19512 0 0 449.1462241865316 659.8022554986936 1108.9484796852253 0 0 0 0 0 0 0 0 0 R 0.19512 - 1 + NaN NaN 111197.4 NaN 7674 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10420 50.793 NaN 51472 35 0 5413.4 0.264 + 24680 RYLSPKYIKMF 11 36 482.60400107569274 1444.7901738272783 3 482.93804931640625 MULTI HCD FTMS 0 0 0 10413 16706.8046875 0.03954845756889514 39 -1.0014762878417969 7 Unmodified _RYLSPKYIKMF_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1 2.0839675508343545 0.40978109276162705 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84971.9 NaN 7675 2743 10413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10422 50.798 NaN 366370 35 0 46412 0.327 + 13024 KYITDVVKL 9 67 539.828847134775 1077.6431413363498 2 539.828857421875 MULTI HCD FTMS 0 0 0 10421 217320.59375 0.45623109809633283 5 -0.12143325805664062 1 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 73.1962812333195 0.00805395026373928 2 KY{I|L}TDVVK{I|L} 9 0 + 76.116 0 0 7.0632 7.0632 86.6 0 0 0 6.272547444685756 8.786487320266076 6.272547444685756 1.866654986684722 0 2.4634679910804405 0 0.28872548999643577 0 + + KY{I|L}TDVVK{I|L};K{I|L}YTDVVK{I|L};{I|L}KYTDVVK{I|L};[YK]{I|L}TDVVK{I|L};[YK]{I|L}TDVV{I|L}K 7.0632;6.8899;6.4811;6.2478;6.1122 +;-;-;+;- + 143 + NaN NaN 142773 NaN 7676 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10423 50.803 NaN 335250 35 0 26940 0.261 + 35770 YYMIGEQKF 9 69 597.7787428499588 NaN 0 597.77880859375 PEAK HCD FTMS 0 0 0 10421 146247.265625 0.5771327349333322 -5 0.14009475708007812 2 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 83.42873516780209 0.0018677447555603313 2 VY{M(Oxidation (M))|F}{I|L}GEQ 7 3 60.245 0 0 5.0475 0 0 64.00601348622588 290.15073572330317 354.15674920952904 0 0 0 0 0 2.0994850021680094 0 0.28872548999643577 0.7302046884880937 VY{M(Oxidation (M))|F}{I|L}GEQ 5.0475 - 135 + NaN NaN 134058.8 NaN 7677 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10424 50.806 NaN 243720 35 0 27487 0.261 + 18589 MVSDEYEQL 9 59 565.2395762659492 1128.4645995986982 2 565.23974609375 MULTI HCD FTMS 0 0 0 10421 124655.234375 0.12651635318858062 11 -0.2789039611816406 3 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 49.93300154707207 0.03166451819912738 2 EYEQ{I|L} 5 4 47.541 0 0 4.2128 0 0 448.16230971504064 0 448.16230971504064 0 38.58299746319869 0 0 0 1 0 0.3807196863200844 0 + EYEQ{I|L} 4.2128 + + 120 NaN NaN 122466.7 NaN 7678 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10425 50.81 NaN 115650 35 0 20034 0.263 -1 0 43 424.08158051091766 NaN 0 424.08154296875 PEAK HCD FTMS 0 0 0 10421 74198.578125 0.4899710735295711 166 -3.885974884033203 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94331.3 NaN 7679 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10426 50.813 NaN 337640 35 0 31404 0.261 + 24654 RYLSKVLEL 9 77 560.8396271573348 1119.6647013814695 2 560.8397827148438 MULTI HCD FTMS 0 0 0 10421 106211.9140625 0.7841323411732773 -4 0.11717987060546875 5 Unmodified _RYLSKVLEL_ ENSG00000169609|ENST00000304177|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF;nc|nan|Q8WUR7-2|C15orf40;nc|nan|Q8WUR7-3|C15orf40 32.037481411007896 0.10189719824197178 2 {I|L}{M(Oxidation (M))|F}{I|L}VKS 6 7 52.186 0 0 4.6608 0 0 0 429.2252291315063 429.2252291315063 41.09312225794824 0 0 0 0 0.5994850021680094 0 0.805462187404089 0 {I|L}{M(Oxidation (M))|F}{I|L}VKS 4.6608 - 258 + NaN NaN 136482.3 NaN 7680 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10427 50.816 NaN 102820 35 0 7383.9 0.261 -1 AYPHNLMTF 9 46 555.2577693209265 1108.500985708653 2 555.2579345703125 MULTI HCD FTMS 0 0 0 10421 35514.63671875 0.03263059765988031 73 -1.901123046875 6 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 18.1463463914782 0.20357593197100715 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 26.427 0 0 2.384 0 0 695.3410511701187 0 695.3410511701187 0 26.42667503568731 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.384 + + 6 NaN NaN 89809.9 NaN 7681 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10428 50.82 NaN 93491 35 0 5160.9 0.261 + 19534 NSGREDSENTF 11 48 628.265201071024 1254.5158492088478 2 628.2633056640625 MULTI HCD FTMS 0 0 0 10421 27522.787109375 0.43770275913317647 9 -0.2264862060546875 7 Unmodified _NSGREDSENTF_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 6.630372943996041 0.3898421031449734 2 HQNT{M(Oxidation (M))|F} 5 8 39.737 0 0 3.1675 0 0 609.2494374005875 0 609.2494374005875 0 36.242209500285014 0 0 0 0.3807196863200844 0 0 0.4247425010840047 HQNT{M(Oxidation (M))|F} 3.1675 - 22 NaN NaN 96538.8 NaN 7682 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10429 50.823 NaN 129350 35 0 6332.6 0.261 + 24798 RYPDRITLI 9 52 573.8351785583931 1145.655804183586 2 573.8351440429688 MULTI HCD FTMS 0 0 0 10421 19750.037109375 0.5078882756381641 -8 0.21542739868164062 8 Unmodified _RYPDRITLI_ ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF 4.897010918128616 0.31389406404703984 2 RY 2 7 16.198 0 0 1.4139 0 0 0 823.4721163385374 823.4721163385374 7.971062485323515 0 0 0 0 0 0 0 0 + RY 1.4139 + + 39 + NaN NaN 114088.3 NaN 7683 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10430 50.826 NaN 121210 35 0 33858 0.264 + 7195 FSLHPGQPAYF 11 38 421.8767607381047 1262.608452814514 3 421.87640380859375 MULTI HCD FTMS 0 0 0 10421 29178.830078125 0.025721984994503115 35 -0.8896903991699219 9 Unmodified _FSLHPGQPAYF_ REV__ENST00000338492.8_1_10:134018945-134019089:+|nuORF 4.715918219556657 0.3982382512160552 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.7416 0 0 1097.5294713465437 0 1097.5294713465437 0 17.385606273598313 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.7416 + + 5 + NaN NaN 106925.8 NaN 7684 2744 10421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10432 50.831 NaN 1594100 35 0 298230 0.327 + 10793 ISQPQEPEL 9 76 520.7664676390707 1039.5183823449413 2 520.7662963867188 MULTI HCD FTMS 0 0 0 10431 580916.125 0.2819192910137748 -5 0.15015411376953125 1 Unmodified _ISQPQEPEL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 114.18643581695662 0.002258955990713129 2 [EP][KA]QEPE{I|L} 9 4 + 77.519 0 0 7.4572 7.4572 86.591 0 0 0 0.16228252799176346 4.776501092503182 0.16228252799176346 0.16228252799176346 0 1.7887254899964358 1.3979400086720375 0.3494850021680094 0.805462187404089 [EP][KA]QEPE{I|L};{[TV]|[{I|L}S]}QPQEPE{I|L};[EP]Q[KA]EPE{I|L};N[{I|L}T]PQEPE{I|L};[EP][KA][AG]EPE{I|L};{[TV]|[{I|L}S]}[AG]PQEPE{I|L};{[TV]|[{I|L}S]}QP[AG]EPE{I|L};[EP][AG][KA]EPE{I|L};[TP]{[QV]|[N{I|L}]|[RA]|[KV]}QEPE{I|L};N[{I|L}T]P[AG]EPE{I|L} 7.4572;7.4416;7.0266;6.9977;6.5714;6.5558;6.5558;5.877;5.5332;5.318 -;+;-;-;-;-;-;-;-;- + 638 NaN NaN 324516.2 NaN 7685 2745 10431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10433 50.836 NaN 433810 35 0 39087 0.261 + 35332 YWMHVQNTF 9 80 621.2741052049596 1240.533657476719 2 621.27392578125 MULTI HCD FTMS 0 0 0 10431 234792.75 0.6463014409416253 9 -0.21642303466796875 2 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 118.89474601620944 0.0014903111061077812 2 N{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 8 2 56.972 0 0 4.5925 0 0 235.1034339433191 0 235.1034339433191 0 33.26016831511887 0 0 0 2.6677353201839438 0 1.5 0.8945990182825423 N{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 4.5925 - 1354 + NaN NaN 149476 NaN 7686 2745 10431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10434 50.839 NaN 263780 35 0 38985 0.261 -1 KYAMMFAEL 9 59 568.2615780253091 1134.508603117418 2 568.2619018554688 MULTI HCD FTMS 0 0 0 10431 132274.28125 0.49913981403379637 -12 0.33724212646484375 3 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 2 AE{I|L} 3 -1 35.445 0 0 3.1243 0 0 803.3318958966812 0 803.3318958966812 0 9.955678082598922 0 0 0 0.9247425010840047 0 0 0 AE{I|L} 3.1243 + + 86 NaN NaN 122709.1 NaN 7687 2745 10431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10435 50.843 NaN 589850 35 0 126500 0.263 + 35898 YYSPHGHILVL 11 66 433.5677468536842 1297.6814111612525 3 433.5677185058594 MULTI HCD FTMS 0 0 0 10431 153107.890625 0.415917401118807 -4 0.11726760864257812 4 Unmodified _YYSPHGHILVL_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 27.088373467376528 0.22106052561220446 2 YY 2 9 34.314 0 0 2.6442 0 0 0 968.53296499511 968.53296499511 -1.1313826580723116 0 -1.1313826580723116 0 0 0.28872548999643577 1.5228787452803376 0 0 + YY 2.6442 + + 34 + NaN NaN 178355 NaN 7688 2745 10431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10436 50.846 NaN 147940 35 0 23768 0.261 + 1260 AYLSRRLAYF 10 61 420.56803808185066 1258.682284845752 3 420.56787109375 MULTI HCD FTMS 0 0 0 10431 27485.09375 0.40730805935983455 2 -0.05257415771484375 5 Unmodified _AYLSRRLAYF_ ENSG00000144893|ENST00000687756|MED12L;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000184634|Q93074-3|MED12 17.86316937532769 0.34402595751606074 2 AY 2 8 45.217 0 0 3.5924 0 0 0 1021.5577963921291 1021.5577963921291 15.752574989159953 0 0 0 0 0.4247425010840047 2 0 0 + AY 3.5924 + + 33 + NaN NaN 110490.8 NaN 7689 2745 10431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10438 50.851 NaN 878640 35 0 283410 0.327 + 27473 SYVWRTYHL 9 66 408.8767542074316 1223.6084332224948 3 408.8769226074219 MULTI HCD FTMS 0 0 0 10437 268143.125 0.8130930594121432 2 -0.049221038818359375 1 Unmodified _SYVWRTYHL_ ENSG00000161981|ENST00000293861|SNRNP25;ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;nc|ENSG00000161981|Q9BV90|SNRNP25 34.93206674587334 0.08860942999206235 2 SYVWR 5 4 70.261 0 0 5.7421 0 0 0 529.2395529791486 529.2395529791486 49.31872208767466 0 0 0 0 1.2302046884880937 2 0 0 + SYVWR 5.7421 + + 170 + NaN NaN 220956.5 NaN 7690 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10439 50.856 NaN 533020 35 0 64291 0.261 + 29340 TYPDVNNSI 9 76 511.74297799623065 1021.4714030592613 2 511.7432556152344 MULTI HCD FTMS 0 0 0 10437 255421.015625 0.9492606925892495 -1 0.019672393798828125 2 Unmodified _TYPDVNNSI_ ENSG00000122958|ENST00000263559|VPS26A;nc|ENSG00000122958|O75436-2|VPS26A 100.0907132914201 0.004261551473353346 2 [YT][DP]VNNS{I|L} 9 0 + 82.32 0 0 8.0589 8.0589 92.117 0 0 0 3.7977725609566306 3.7977725609566306 3.7977725609566306 9.208187539523749 0 2.56295299324845 1.6989700043360187 1.1549471895720984 1.1549471895720984 + + [YT][DP]VNNS{I|L};[YT][DP]VGGNS{I|L};[YT][DP]VNGGS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS]ENNS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}VNNS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS]ENGGS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS]EGGNS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}VNGGS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}VGGNS{I|L};[NS]{I|L}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NS{I|L} 8.0589;7.1575;6.8153;5.0368;4.7726;4.1353;4.1353;3.8711;3.8711;3.7325 +;-;-;-;-;-;-;-;-;- + 716 + NaN NaN 167542.6 NaN 7691 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10440 50.859 NaN 529640 35 0 32100 0.261 + 19330 NNTIDLKTL 9 95 516.2898626681636 1030.565172403127 2 516.7891845703125 MULTI HCD FTMS 0 0 0 10437 135899.734375 0.6163784816193403 5 -0.11804580688476562 3 Unmodified _NNTIDLKTL_ REV__ENSG00000170382|ENST00000367177|LRRN2 21.536976647645854 0.1742816388551942 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QD]|[EN]|[WG]|[KD]|[RS]}NV{[NV]|[RG]} 9 -1 + 26.206 0 0 2.5428 2.5428 80 0 0 0 1.7416557876248397 -2.615618994235689 -2.615618994235689 0.11439372640168699 0 0 1.3979400086720375 0 0.2614393726401688 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QD]|[EN]|[WG]|[KD]|[RS]}NV{[NV]|[RG]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QD]|[EN]|[WG]|[KD]|[RS]}N[{I|L}A]Q;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QD]|[EN]|[WG]|[KD]|[RS]}N[QA]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QD]|[EN]|[WG]|[KD]|[RS]}N[KA]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QD]|[EN]|[WG]|[KD]|[RS]}GGV{[NV]|[RG]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[WK]{[QV]|[N{I|L}]|[RA]|[KV]}Q;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WR]N[KA]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[WK]{[QN]|[E{I|L}]|[KN]}{I|L};[{I|L}T]WWN[KA]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[WK]AA{[NV]|[RG]} 2.5428;2.5317;1.731;1.731;1.6493;1.611;1.5653;0.81025;0.73342;0.72339 -;-;-;-;-;-;-;-;-;- 368 NaN NaN 167387 NaN 7692 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10441 50.862 NaN 413570 35 0 72632 0.261 + -1 LMLSSRLIR 9 78 552.8298034093027 1103.6450538854053 2 552.830322265625 MULTI HCD FTMS 0 0 0 10437 136511.546875 0.6562447303371014 2 -0.049221038818359375 4 Oxidation (M) _LM(Oxidation (M))LSSRLIR_ REV__ENST00000446488.7_1_11:129758641-129762683:-|nuORF 22.736283301280096 0.1639198954644489 2 Q{M(Oxidation (M))|F} 2 -1 23.271 0 0 2.1086 0 0 810.5075854789585 0 810.5075854789585 0 2.280112074112175 0 0 0 0 0 0 0.3807196863200844 Q{M(Oxidation (M))|F} 2.1086 - 202 + NaN NaN 142074.1 NaN 7693 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10442 50.866 NaN 212910 35 0 39586 0.261 + 35030 YTHEEYISL 9 50 577.7716904949515 1153.5288280567029 2 577.7719116210938 MULTI HCD FTMS 0 0 0 10437 73817.484375 0.30056877718630887 -5 0.13694000244140625 5 Unmodified _YTHEEYISL_ ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5 25.399314129420986 0.14091189997036632 2 Y{I|L}S{I|L} 4 5 43.488 0 0 3.77 0 0 659.2552967755875 0 659.2552967755875 0 35.95175337211302 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + Y{I|L}S{I|L} 3.77 + + 45 NaN NaN 119919.2 NaN 7694 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10443 50.869 NaN 397840 35 0 48673 0.261 -1 YILFMCVR 8 65 530.7689504702247 1059.5233480072493 2 531.7575073242188 MULTI HCD FTMS 0 0 0 10437 21423.927734375 0.5407688732339928 -4 0.11809539794921875 6 Oxidation (M) _YILFM(Oxidation (M))CVR_ ENSG00000197535|ENST00000399233|MYO5A;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A 14.581692164780916 0.48650662947107914 2 [Y{I|L}]{I|L} 3 -1 31.695 0 0 2.9914 0 0 0 667.2688846822874 667.2688846822874 13.423552944845483 0 0 0 0 0.7742275032520141 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.9914 + + 86 NaN NaN 142475.8 NaN 7695 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10444 50.872 NaN 400960 35 0 41721 0.261 + 26034 SPEEMEEIQ 9 88 546.231568540663 1090.448584148126 2 547.2223510742188 MULTI HCD FTMS 0 0 0 10437 5807.20458984375 0.17993069800702988 9 -0.22625732421875 7 Unmodified _SPEEMEEIQ_ ENSG00000183318|ENST00000689094|SPDYE4 7.289230182591677 0.29575926068275815 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 6 22.051 0 0 2.0222 0 0 0 740.2413447284572 740.2413447284572 2.5874185669681538 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.0222 - 454 NaN NaN 155767.1 NaN 7696 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10445 50.876 NaN 151120 35 0 21639 0.261 -1 MPSERCLSI 9 53 526.2484608998653 1050.4823688665306 2 526.2479858398438 MULTI HCD FTMS 0 0 0 10437 37960.9140625 0.5704753521974233 6 -0.1409454345703125 8 Oxidation (M) _M(Oxidation (M))PSERCLSI_ ENSG00000186231|ENST00000369261|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;nc|ENSG00000186231|Q96NJ5-3|KLHL32 3.5964929083625545 0.32375295897743744 2 S[EP] 3 -1 10.686 0 0 1.0173 0 0 719.3630132271742 0 719.3630132271742 0 -0.9960752895140939 -0.9960752895140939 0 0 0.5 0 0 0 S[EP] 1.0173 - 23 NaN NaN 106466.8 NaN 7697 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10446 50.879 NaN 150120 35 0 6156.6 0.261 -1 QPMDIHVEL 9 65 549.2683261307061 1096.522099328212 2 549.2679443359375 MULTI HCD FTMS 0 0 0 10437 49051.95703125 1 0 0 9 Oxidation (M) _QPM(Oxidation (M))DIHVEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 15.847184025352803 0.2234401846867398 2 D{[QN]|[E{I|L}]|[KN]} 3 -1 12.447 0 0 1.1352 0 0 721.3608535547796 0 721.3608535547796 0 1.9010562085580336 0 0 0 0 0 0.5 0 D{[QN]|[E{I|L}]|[KN]} 1.1352 - 41 NaN NaN 102275 NaN 7698 2746 10437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10448 50.884 NaN 1661900 35 0 99852 0.327 + 22946 QYVDFHNQL 9 93 582.2775725251065 1162.540592117013 2 582.2778930664062 MULTI HCD FTMS 0 0 0 10447 998666.1875 1 0 0 1 Unmodified _QYVDFHNQL_ ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 232.37328098223372 3.7806638009258832E-25 2 [YQ]VD{M(Oxidation (M))|F}HNQ{I|L} 9 0 + 83.896 0 0 7.2166 7.2166 90.675 0 0 0 1.0340874929963775 1.0340874929963775 1.0340874929963775 9.208187539523749 0 2.1976212463643425 1.154901959985743 0.535666875892183 2.0911290632962722 + + [YQ]VD{M(Oxidation (M))|F}HNQ{I|L};[YQ]VD{M(Oxidation (M))|F}HGGQ{I|L};[YQ]VD{M(Oxidation (M))|F}HN[AG]{I|L};[YQ]VD{M(Oxidation (M))|F}HGG[AG]{I|L};[NS][TA]N{[RE]|[WV]}VC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F}[PG]NQ{I|L};[DV][YQ]{M(Oxidation (M))|F}HNQ{I|L};[NS][TA]N{[RE]|[WV]}MQ{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KC]VC(Carbamidomethyl (C)){I|L};[YQ]QS[WP]NQ{I|L} 7.2166;6.4245;6.3356;5.5473;3.8644;3.3965;3.381;2.9527;2.8747;2.8054 +;-;-;-;-;-;-;-;-;- + 6045 + NaN NaN 342850.5 NaN 7699 2747 10447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10449 50.888 NaN 420680 35 0 64860 0.261 + 16066 LPSPAIDHEQL 11 78 610.3193954213524 1218.6242379095047 2 610.3195190429688 MULTI HCD FTMS 0 0 0 10447 145434.640625 0.6980681252287441 -2 0.05257415771484375 2 Unmodified _LPSPAIDHEQL_ ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 93.44831873261192 0.01243483317044255 2 {I|L}PSPA{I|L}D 7 4 92.432 0 0 7.585 0 0 0 522.2321261041624 522.2321261041624 72.7394811203016 0 0 0 0 1.9436726795685342 1.6989700043360187 1.305462187404089 0 + {I|L}PSPA{I|L}D 7.585 + + 360 + NaN NaN 149344.1 NaN 7700 2747 10447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10450 50.892 NaN 301950 35 0 14381 0.261 + 17479 LYSVTVKWGK 10 60 590.83994207774 NaN 0 590.858154296875 PEAK HCD FTMS 0 0 0 10447 5036.2939453125 0.1317613752902771 5 -0.10804367065429688 3 Unmodified _LYSVTVKWGK_ ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;USP14-THOC1|1|fusion;USP14-THOC1|2|fusion 9.38312468134398 0.33215363477037435 2 {I|L}KV 3 8 15.445 0 0 1.3093 0 0 276.1101668131195 560.27951395922 836.3896807723395 0 0 0 0 0 0 0 0 0.2742275032520141 {I|L}KV 1.3093 - 8 + NaN NaN 133694.2 NaN 7701 2747 10447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10451 50.895 NaN 123040 35 0 13486 0.261 -1 LCCGLCWLG 9 48 562.2417651490858 1122.4689773649716 2 562.74267578125 MULTI HCD FTMS 0 0 0 10447 42886.48046875 0.9355277299577686 4 -0.08514404296875 4 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))CGLC(Carbamidomethyl (C))WLG_ ENST00000371933.7_1_1:47173716-47182052:-|nuORF 2.302733041254933 0.33356062215410776 2 V 1 -1 6.9897 0 0 0.62271 0 0 130.09234159586578 890.2857760065061 1020.378117602372 0 0 0 0 0 0 0 0 0 V 0.62271 - 6 + NaN NaN 106807.2 NaN 7702 2747 10447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10453 50.9 NaN 1343100 35 0 214030 0.327 + 24388 RYIPTAAAF 9 87 505.27681951727675 1008.5390861013535 2 505.2770690917969 MULTI HCD FTMS 0 0 0 10452 430951.8125 0.06747127922784185 12 -0.30496978759765625 1 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 39.94969957227396 0.06557568441294001 2 AAA{M(Oxidation (M))|F} 4 5 43.418 0 0 4.305 0 0 630.3465944124533 0 630.3465944124533 0 24.338644411852844 0 0 0 1.5994850021680094 0 0 0 + AAA{M(Oxidation (M))|F} 4.305 + + 791 NaN NaN 295295.8 NaN 7703 2748 10452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10454 50.905 NaN 588920 35 0 142740 0.261 + 16469 LSTDWHLV 8 49 485.7534841156055 969.492415298011 2 485.76397705078125 MULTI HCD FTMS 0 0 0 10452 74925.1484375 0.8076516386022089 -2 0.049221038818359375 2 Unmodified _LSTDWHLV_ REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F}AA{I|L}{I|L} 5 -1 33.733 0 0 3.4795 0 0 436.2109547345719 0 436.2109547345719 0 10.929818561344256 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AA{I|L}{I|L} 3.4795 - 68 NaN NaN 179400.6 NaN 7704 2748 10452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10455 50.908 NaN 372950 35 0 65122 0.261 + 332 AGIQNEMLQL 10 62 558.7918424173838 NaN 0 558.779296875 PEAK HCD FTMS 0 0 0 10452 9746.6337890625 0.5512089474259747 2 -0.035888671875 3 Unmodified _AGIQNEMLQL_ REV__ENSG00000187122|ENST00000266058|SLIT1;REV__ENST00000456008.2_1_10:98917340-98945578:-|nuORF;REV__nc|ENSG00000187122|O75093-2|SLIT1 14.838274106304384 0.3224471714378502 2 Q{I|L}QY 4 -1 20.974 0 0 1.8801 0 0 131.12064346188203 449.1582430475219 580.278886509404 0 0 0 0 0 0 0 0 0.3807196863200844 Q{I|L}QY 1.8801 - 128 + NaN NaN 143176.1 NaN 7705 2748 10452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10456 50.912 NaN 333940 35 0 68533 0.261 -1 0 69 527.2671553676765 526.2598789010765 1 527.2822875976562 MULTI HCD FTMS 0 0 0 10452 23794.3984375 0.7563468914222552 1 -0.019565582275390625 4 NaN NaN 2 S{M(Oxidation (M))|F} 2 -1 21.281 0 0 4.0439 0 0 274.1489455288093 0 274.1489455288093 0 13.834172022634375 0 0 0 0 0 0.3807196863200844 0 S{M(Oxidation (M))|F} 4.0439 - 44 + NaN NaN 143702.6 NaN 7706 2748 10452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10457 50.915 NaN 139930 35 0 23435 0.262 + 4807 EYVEKFYRI 9 41 416.22034200027946 NaN 0 416.2205505371094 PEAK HCD FTMS 0 0 0 10452 19822.197265625 0.8000816876050608 2 -0.035888671875 5 Unmodified _EYVEKFYRI_ ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50 3.5870582119611467 0.27786445876418797 2 V 1 8 3.9794 0 0 0.4792 0 0 217.72570489724018 510.6034639947875 728.3291688920276 0 0 0 0 0 0 0 0 0 + V 0.4792 + + 3 + NaN NaN 111383.9 NaN 7707 2748 10452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10459 50.92 NaN 192730 35 0 31292 0.327 + 25332 SDIFPTHI 8 44 465.2399387801418 NaN 0 465.2397155761719 PEAK HCD FTMS 0 0 0 10458 77712.703125 0.7914433133152399 2 -0.049259185791015625 1 Unmodified _SDIFPTHI_ ENST00000475019.1_1_3:145914331-145918851:-|nuORF 8.593279151180031 0.38822285293237185 2 V 1 8 11.99 0 0 1.2913 0 0 131.09507806431822 695.2795236147412 826.3746016790594 0 0 0 0 0 0.5 0 0 0 V 1.2913 - 15 + NaN NaN 129139.7 NaN 7708 2749 10458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10460 50.924 NaN 162050 35 0 13723 0.261 + 27475 SYVWRTYHL 9 64 612.8115180587037 1223.6084831842072 2 612.8112182617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SYVWRTYHL_ ENSG00000161981|ENST00000293861|SNRNP25;ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;nc|ENSG00000161981|Q9BV90|SNRNP25 11.494710602746466 0.2610445893512368 2 H{I|L} 2 7 19.464 0 0 1.5907 0 0 955.4522502076115 0 955.4522502076115 0 12.161903266879719 0 0 0 0 0 0 0 + H{I|L} 1.5907 + + 21 NaN NaN 107006.3 NaN 7709 2749 10458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10461 50.928 NaN 180650 35 0 42972 0.261 + 31570 VYHPRLFR 8 44 544.3109681074278 1086.6073832816555 2 544.3108520507812 MULTI HCD FTMS 0 0 0 10458 45037.8359375 0.974604067937417 3 -0.0721588134765625 3 Unmodified _VYHPRLFR_ REV__ENSG00000166341|ENST00000299441|DCHS1 5.760428011301431 0.5334459684533844 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 126860.5 NaN 7710 2749 10458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10462 50.931 NaN 99201 35 0 15337 0.261 + 30121 VGATGPEVTL 10 44 472.2584403312861 942.5023277293723 2 472.2586669921875 MULTI HCD FTMS 0 0 0 10458 29816.6875 0.0589895738515295 -10 0.26152801513671875 4 Unmodified _VGATGPEVTL_ ENSG00000204961|ENST00000532602|PCDHA9;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9 8.745405648335112 0.42901288225909884 2 VT{I|L} 3 7 36.198 0 0 3.8406 0 0 611.2915516584 0 611.2915516584 0 36.197887582883936 0 0 0 1 0 0 0 + VT{I|L} 3.8406 + + 8 NaN NaN 116345.8 NaN 7711 2749 10458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10464 50.936 NaN 387230 35 0 29458 0.326 + 35771 YYMIGEQKF 9 68 597.7787428499588 NaN 0 597.7787475585938 PEAK HCD FTMS 0 0 0 10463 214826.84375 0.8477669879206203 1 -0.03293609619140625 1 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 114.20165948288297 1.6628851686604316E-08 2 VY{M(Oxidation (M))|F}{I|L}GEQ 7 3 60.786 0 0 5.0929 0 0 64.00097212100361 290.1505221002563 354.1514942212599 0 0 0 0 0 2.2302046884880937 0 0.28872548999643577 1.1307196863200843 VY{M(Oxidation (M))|F}{I|L}GEQ 5.0929 - 290 + NaN NaN 146991.2 NaN 7712 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10465 50.941 NaN 318050 35 0 36235 0.261 + 18590 MVSDEYEQL 9 62 565.2395405618115 1128.464528190423 2 565.2400512695312 MULTI HCD FTMS 0 0 0 10463 113501.078125 0.11150732026937604 -8 0.20320510864257812 2 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 65.23502041540118 0.010630085227462206 2 EYCCEQ{I|L} 7 6 50.366 0 0 4.4633 0 0 242.12596327949376 0 242.12596327949376 0 39.39728522514727 0 0 0 1.305462187404089 0 1.274227503252014 0 EYCCEQ{I|L} 4.4633 - 111 NaN NaN 153806.2 NaN 7713 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10466 50.944 NaN 267130 35 0 40122 0.262 + 2049 DEFEYCWDTF 10 47 452.1693395967962 1353.4861893905886 3 452.1694030761719 MULTI HCD FTMS 0 0 0 10463 108627.3359375 0.8402569545268445 -5 0.1047821044921875 3 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 1.9063754702782614 0.46521295622613185 2 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.079 0 0 1188.4075283571885 0 1188.4075283571885 0 7.614393726401687 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.079 + + 10 + NaN NaN 123724.1 NaN 7714 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10467 50.948 NaN 284520 35 0 53904 0.261 + 19179 NIDVREPEL 9 59 542.785249089283 1083.5559452453658 2 542.7852783203125 MULTI HCD FTMS 0 0 0 10463 71408.84375 0.28446933519503553 -6 0.13775634765625 4 Unmodified _NIDVREPEL_ ENSG00000153201|ENST00000283195|RANBP2 34.221707139014875 0.09187037853496335 2 {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L} 9 0 + 66.577 0 0 6.1443 6.1443 88.767 0 0 0 25.642492736872597 51.09243748081781 25.642492736872597 9.208187539523749 0 1.8494850021680094 2 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}DV[VG]E[EP]{I|L};{[QN]|[E{I|L}]|[KN]}[QA]RE[EP]{I|L};[EP][KS]RE[EP]{I|L} 6.1443;5.2945;2.1772;1.9725 +;-;-;- + 104 NaN NaN 127729.1 NaN 7715 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10468 50.951 NaN 238600 35 0 23335 0.261 + 13025 KYITDVVKL 9 68 539.828847134775 1077.6431413363498 2 539.828857421875 MULTI HCD FTMS 0 0 0 10463 48037.0234375 0.1008463283391425 11 -0.29204559326171875 5 Unmodified _KYITDVVKL_ ENSG00000120800|ENST00000261637|UTP20 13.614867670302875 0.2427269026982664 2 KY 2 7 13.443 0 0 1.2475 0 0 0 783.4625948541624 783.4625948541624 11.224862742317468 0 0 0 0 0 0 0 0 + KY 1.2475 + + 13 + NaN NaN 127637 NaN 7716 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10469 50.954 NaN 141310 35 0 32166 0.261 -1 MPQSMPEYAL 10 40 599.759377905855 1197.50420287851 2 599.7592163085938 MULTI HCD FTMS 0 0 0 10463 61772.515625 0.7626029075983851 -5 0.1047821044921875 6 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 2 YA{I|L} 3 -1 35.445 0 0 2.9599 0 0 832.3077259748062 0 832.3077259748062 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 YA{I|L} 2.9599 + + 9 NaN NaN 113605.8 NaN 7717 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10470 50.957 NaN 161830 35 0 16263 0.264 -1 0 59 418.5241438057282 2922.6180713738977 7 418.81103515625 MULTI HCD FTMS 0 0 0 10463 20435.732421875 0.3631364052619629 1 -0.03293609619140625 7 NaN NaN 2 W 1 -1 16.99 0 0 0.58132 0 0 2718.52846978874 0 2718.52846978874 0 10 0 0 0 0 0 0 0 W 0.58132 - 7 + NaN NaN 108677.1 NaN 7718 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10471 50.961 NaN 267720 35 0 25769 0.261 + 11095 IYHQVAVQF 9 66 552.7966307647586 1103.578708596317 2 552.796142578125 MULTI HCD FTMS 0 0 0 10463 55681.63671875 0.5515002067956654 -10 0.25493621826171875 8 Unmodified _IYHQVAVQF_ ENSG00000076555|ENST00000338432|ACACB;ENSG00000278540|ENST00000616317|ACACA;ENST00000538526.5_3_12:109697932-109704164:+|nuORF;nc|ENSG00000076555|O00763-2|ACACB;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 25.399314129420986 0.14091189997036632 2 AVQ{M(Oxidation (M))|F} 4 5 38.805 0 0 3.5163 0 0 640.3343373029312 0 640.3343373029312 0 22.606967663961925 0 0 0 1.1382104921644451 0 0 0 + AVQ{M(Oxidation (M))|F} 3.5163 + + 268 NaN NaN 131057.2 NaN 7719 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10472 50.964 NaN 175610 35 0 27635 0.262 + 5022 FDEDERWTNN 10 65 442.5186107978392 1324.5340029937176 3 442.5180358886719 MULTI HCD FTMS 0 0 0 10463 26140.279296875 0.4820071802156629 -2 0.035888671875 9 Unmodified _FDEDERWTNN_ ENSG00000196611|ENST00000315274|MMP1 1.9063754702782614 0.46521295622613185 2 T{M(Oxidation (M))|F} 2 9 19.464 0 0 1.4695 0 0 1058.407368327505 0 1058.407368327505 0 12.016675202793719 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.4695 - 28 + NaN NaN 117419.5 NaN 7720 2750 10463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10474 50.969 NaN 820120 35 0 139610 0.327 + 31920 VYNSEYYHF 9 96 611.2641907432727 1220.5138285533453 2 611.2642211914062 MULTI HCD FTMS 0 0 0 10473 378203.03125 0.3852684451870067 -4 0.08514404296875 1 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 176.83740622441886 1.0594397382223596E-10 2 VYNSEYYH{M(Oxidation (M))|F} 9 0 + 113.95 0 0 9.3363 9.3363 92.147 0 0 0 97.14001255353097 8.384767769392738 8.384767769392738 7.517346757967545 0 2.6791746928241125 2 0.8494850021680094 0.7059771852360797 + + VYNSEYYH{M(Oxidation (M))|F};VYGGSEYYH{M(Oxidation (M))|F};[YV]NSEYYH{M(Oxidation (M))|F};VYN[HD]ESV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]NESYYH{M(Oxidation (M))|F};VYGG[HD]ESV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]GGSEYYH{M(Oxidation (M))|F};VYNSE[HD]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYGGSE[HD]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]VSEYYH{M(Oxidation (M))|F} 9.3363;8.7203;8.5094;7.2717;7.2479;7.2378;6.8902;6.7931;6.7592;6.2144 +;-;+;-;-;-;-;-;-;- + 2212 + NaN NaN 218375.1 NaN 7721 2751 10473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10475 50.974 NaN 692680 35 0 118450 0.261 + 8581 HAVIQEYML 9 93 560.2786688205921 1118.542784707984 2 560.27880859375 MULTI HCD FTMS 0 0 0 10473 188431.5 0.3910792691682614 -6 0.13771820068359375 2 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 53.832793166522166 0.026208976789938845 2 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 58.478 0 0 5.2281 5.2281 88.96 0 0 0 3.65279269351241 37.84318117920506 3.65279269351241 12.75698788007091 0 1.9731975075880328 0 0.2614393726401688 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V{[DA]|[EG]}[{I|L}A]Y{M(Oxidation (M))|F}{I|L};[Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V[VP]{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};[HA]V{I|L}{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{I|L};[VP][HV]A{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};[VS]{[QD]|[EN]|[WG]|[KD]|[RS]}[WK]P{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][YV]{M(Oxidation (M))|F}VV;{[QS]|[NT]}[EP][WK]{M(Oxidation (M))|F}VV 5.2281;4.0876;2.9736;2.9244;2.7045;2.7045;1.6713;1.3217;1.2401;1.108 +;-;-;-;-;-;-;-;-;- + 886 NaN NaN 192732.3 NaN 7722 2751 10473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10476 50.977 NaN 336320 35 0 33068 0.261 + 10479 IPDQKYVTL 9 64 538.8022266308111 1075.5899003284221 2 538.8026733398438 MULTI HCD FTMS 0 0 0 10473 43332.1640625 0.7974467118453505 3 -0.078704833984375 3 Unmodified _IPDQKYVTL_ ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B 12.872603262515298 0.2491399024913319 2 {I|L}T{I|L} 3 6 19.838 0 0 1.8444 0 0 730.368944236525 0 730.368944236525 0 12.848265625289844 0 0 0 0.3807196863200844 0 0 0 {I|L}T{I|L} 1.8444 - 77 NaN NaN 140335.2 NaN 7723 2751 10473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10477 50.98 NaN 105830 35 0 6745.1 0.261 -1 YPEGFEIHSM 10 56 613.2633945636383 1224.5122361940764 2 613.263916015625 MULTI HCD FTMS 0 0 0 10473 25330.07421875 0.08529901027087324 34 -0.8855171203613281 4 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 20.41453444215458 0.3201613495159799 2 YPE 3 -1 25.956 0 0 2.1197 0 0 0 832.3356417291624 832.3356417291624 18.96591250700361 0 0 0 0 0.6747425010840047 0 0 0 YPE 2.1197 + + 47 + NaN NaN 104698.1 NaN 7724 2751 10473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10478 50.984 NaN 122590 35 0 6274.1 0.261 -1 AYPHNLMTF 9 53 555.2577693209265 1108.500985708653 2 555.2578125 MULTI HCD FTMS 0 0 0 10473 33369.640625 0.030659790381983573 80 -2.0377120971679688 5 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 30.636539890814138 0.10832830463492794 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][YG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 -1 + 40.057 0 0 3.6136 3.6136 88.086 0 0 0 13.40166223149673 15.64467435142582 13.40166223149673 20.22878745280337 0 0.9247425010840047 2 0.5 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][YG]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};EH{M(Oxidation (M))|F}[YG][Q{I|L}]{[ES]|[DT]|[{I|L}C]} 3.6136;1.7888 -;- 42 NaN NaN 105985.8 NaN 7725 2751 10473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10479 50.987 NaN 75098 35 0 13116 0.261 + 23485 RLYSRYSRFAK 11 48 482.9389167295756 NaN 0 482.9384765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _RLYSRYSRFAK_ REV__ENSG00000197054|ENST00000358987|ZNF763;REV__nc|ENSG00000197054|Q0D2J5-2|ZNF763;REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763 0.3666738066901352 0.3410799954756924 2 T 1 -1 5.4846 0 0 0.56902 0 0 130.47309605505126 729.3193453424436 859.7924413974949 0 0 0 0 0 0 0 0 0 T 0.56902 - 2 + NaN NaN 94654.4 NaN 7726 2751 10473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10481 50.992 NaN 2862000 35 0 586210 0.326 + 10794 ISQPQEPEL 9 81 520.7664676390707 1039.5183823449413 2 520.7666015625 MULTI HCD FTMS 0 0 0 10480 1533413 0.7441671649092293 2 -0.055805206298828125 1 Unmodified _ISQPQEPEL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 128.93241758739586 0.0006697181619526092 2 [EP][KA]QEPE{I|L} 9 4 + 90.173 0 0 8.6745 8.6745 90.228 0 0 0 4.96839269034524 13.986826149160137 4.96839269034524 4.476212463643421 0 1.8494850021680094 1.5228787452803376 1.110924374808178 1.1237125054200234 [EP][KA]QEPE{I|L};[EP]Q[KA]EPE{I|L};{[QS]|[NT]}{I|L}PQEPE{I|L};[EP][KA][AG]EPE{I|L};NT{I|L}PQEPE{I|L};{[QS]|[NT]}{I|L}P[AG]EPE{I|L};[EP][AG][KA]EPE{I|L};[TP]{[QV]|[N{I|L}]|[RA]|[KV]}QEPE{I|L};[QP]{[TV]|[{I|L}S]}QEPE{I|L};[EP]Q{I|L}{[QS]|[NT]}PE{I|L} 8.6745;8.2439;8.1965;7.7887;7.329;7.3107;7.0943;6.7505;6.4609;6.2775 -;-;-;-;-;-;-;-;-;- 1125 NaN NaN 533220.1 NaN 7727 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10482 50.996 NaN 1037700 35 0 150010 0.261 + 10667 IPVHDGYVL 9 75 506.7767086453708 1011.5388643575416 2 506.77679443359375 MULTI HCD FTMS 0 0 0 10480 609902.3125 0.6181487647301808 -4 0.09172439575195312 2 Unmodified _IPVHDGYVL_ ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A 46.020951573049366 0.037705236580089195 2 {I|L}V[MD]RT{M(Oxidation (M))|F} 7 6 31.26 0 0 3.0904 0 0 131.0951417876741 0 131.0951417876741 0 13.939710319540524 0 0 0 0 0 0.555462187404089 0 {I|L}V[MD]RT{M(Oxidation (M))|F} 3.0904 - 285 + NaN NaN 250088 NaN 7728 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10483 51 NaN 683980 35 0 142720 0.261 + 35899 YYSPHGHILVL 11 67 433.5677468536842 1297.6814111612525 3 433.56781005859375 MULTI HCD FTMS 0 0 0 10480 241595.015625 0.6562925699767969 3 -0.0853118896484375 3 Unmodified _YYSPHGHILVL_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 32.89776655970281 0.18269067959614227 2 {I|L}V{I|L} 3 8 33.94 0 0 2.6154 0 0 954.4352544425691 0 954.4352544425691 0 -0.3737673202475946 -0.3737673202475946 0 0 0.9247425010840047 0 0 0 + {I|L}V{I|L} 2.6154 + + 24 NaN NaN 192605.8 NaN 7729 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10484 51.003 NaN 485500 35 0 63475 0.261 + 12724 KYAMMFAEL 9 83 568.2615780253091 1134.508603117418 2 568.2617797851562 MULTI HCD FTMS 0 0 0 10480 221855.390625 0.8371760358286411 -5 0.10804367065429688 4 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 53.832793166522166 0.026208976789938845 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 9 2 + 52.7 0 0 4.6452 4.6452 83.666 0 0 0 0.04364805402449434 23.772369974592742 0.04364805402449434 4.5075982057851505 0 1.6237125054200234 0 0.3054621874040891 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[NG]NE{M(Oxidation (M))|F}ANK;{[QN]|[E{I|L}]|[KN]}[NG]NE{M(Oxidation (M))|F}AGGK;{[QN]|[E{I|L}]|[KN]}[NG]GGE{M(Oxidation (M))|F}ANK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[DV];{[QN]|[E{I|L}]|[KN]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}NTC(Carbamidomethyl (C)){I|L};{[QN]|[E{I|L}]|[KN]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[MD]NK;{[QN]|[E{I|L}]|[KN]}[NG]N[KS]TC(Carbamidomethyl (C)){I|L};{[QN]|[E{I|L}]|[KN]}[NG][KS]NTC(Carbamidomethyl (C)){I|L};{[QN]|[E{I|L}]|[KN]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}NTGC{I|L} 4.6452;4.2479;3.4401;3.4401;1.9981;1.3384;1.248;0.8147;0.65558;0.64415 -;-;-;-;-;-;-;-;-;- 633 NaN NaN 162748.5 NaN 7730 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10485 51.007 NaN 853420 35 0 289030 0.261 -1 YTKCHNSN 8 79 512.2193809268459 1022.4242089204919 2 512.2196044921875 MULTI HCD FTMS 0 0 0 10480 207034.96875 0.5908157578835033 -4 0.09172439575195312 5 Carbamidomethyl (C) _YTKC(Carbamidomethyl (C))HNSN_ ENSG00000081479|ENST00000649046|LRP2 14.838274106304384 0.4846187982323419 2 NNENNSN 7 -1 44.786 0 0 4.3804 0 0 218.126756736525 0 218.126756736525 0 23.762174453294435 0 0 0 0 0 0.28872548999643577 0.3807196863200844 NNENNSN 4.3804 - 502 NaN NaN 213401 NaN 7731 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10486 51.01 NaN 417250 35 0 35381 0.261 + 20725 PFVRCVPLT 9 87 516.2898626681636 1030.565172403127 2 516.7892456054688 MULTI HCD FTMS 0 0 0 10480 83458.9609375 0.3785313330946979 11 -0.2888450622558594 6 Unmodified _PFVRCVPLT_ REV__nc|ENSG00000144559|Q96BW9|TAMM41 8.593279151180031 0.2858735984551981 2 VE{M(Oxidation (M))|F} 3 -1 28.06 0 0 2.7227 0 0 637.4095460376958 0 637.4095460376958 0 9.043162181802202 0 0 0 0 0 0.4247425010840047 0 VE{M(Oxidation (M))|F} 2.7227 - 158 + NaN NaN 154902.9 NaN 7732 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10487 51.013 NaN 269750 35 0 21982 0.261 + 35333 YWMHVQNTF 9 69 621.2741052049596 1240.533657476719 2 621.2747192382812 MULTI HCD FTMS 0 0 0 10480 126001.1875 0.34683672746115846 16 -0.40349578857421875 7 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 85.64151623876279 0.004640175941193596 2 [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F} 9 0 + 58.244 0 0 4.6951 4.6951 86.477 0 0 0 44.07551408138231 10.021454132860107 10.021454132860107 9.208187539523749 0 2.4564608101803795 1.3979400086720375 0.8807196863200843 0.7302046884880937 + + [WY]{M(Oxidation (M))|F}HVQNT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HV[AG]NT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}HVQGGT{M(Oxidation (M))|F};[WY]{M(Oxidation (M))|F}[VG][HA]NT{M(Oxidation (M))|F} 4.6951;3.9528;3.6459;2.6574 +;-;-;- + 361 + NaN NaN 125343.5 NaN 7733 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10488 51.017 NaN 268500 35 0 18561 0.262 + 29910 VFDPVQKTL 9 66 523.7975981821103 1045.5806434310205 2 523.79736328125 MULTI HCD FTMS 0 0 0 10480 45296.5625 0.8329903821129094 -1 0.022899627685546875 8 Unmodified _VFDPVQKTL_ ENSG00000149480|ENST00000278823|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant 16.149105407346934 0.22083165093524068 2 [YT]P 3 8 20.986 0 0 2.0071 0 0 0 681.3946137281486 681.3946137281486 6.280994675737757 0 0 0 0 0.5 1.3979400086720375 0 0 [YT]P 2.0071 - 50 NaN NaN 127562.3 NaN 7734 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10489 51.02 NaN 110440 35 0 24882 0.261 + 14702 LHAQPHHL 8 39 476.7584954686043 951.5024380040086 2 476.7591552734375 MULTI HCD FTMS 0 0 0 10480 34511.44921875 0.9221700171221223 -4 0.09172439575195312 9 Unmodified _LHAQPHHL_ ENSG00000187257|ENST00000334955|RSBN1L 14.581692164780916 0.48650662947107914 2 {I|L}{I|L} 2 6 20.969 0 0 2.2038 0 0 0 722.3116549127561 722.3116549127561 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}{I|L} 2.2038 - 2 + NaN NaN 108770.2 NaN 7735 2752 10480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10491 51.025 NaN 376010 35 0 25352 0.326 + 22947 QYVDFHNQL 9 75 582.2775725251065 1162.540592117013 2 582.27783203125 MULTI HCD FTMS 0 0 0 10490 230701.203125 0.23100932625197146 6 -0.15746307373046875 1 Unmodified _QYVDFHNQL_ ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 99.75527289724121 0.004270341300239591 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}VREDVC(Carbamidomethyl (C)) 8 8 61.049 0 0 5.2514 0 0 0 128.07382649778393 128.07382649778393 38.65356566548286 0 0 0 0 1.2474250108400469 1.6989700043360187 0 1.555462187404089 {[WS]|[C(Carbamidomethyl (C)){I|L}]}VREDVC(Carbamidomethyl (C)) 5.2514 - 1196 NaN NaN 147599.5 NaN 7736 2753 10490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10492 51.029 NaN 279200 35 0 51845 0.261 + 35031 YTHEEYISL 9 64 577.7716904949515 1153.5288280567029 2 577.7717895507812 MULTI HCD FTMS 0 0 0 10490 159374.625 0.6489388869908442 2 -0.052417755126953125 2 Unmodified _YTHEEYISL_ ENSG00000139990|ENST00000341516|DCAF5;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5 30.636539890814138 0.10832830463492794 2 TY{I|L}S{I|L} 5 4 48.962 0 0 4.2445 0 0 558.2006092755875 0 558.2006092755875 0 39.358003656410965 0 0 0 1.1421590589602533 0 0.3807196863200844 0 TY{I|L}S{I|L} 4.2445 - 111 NaN NaN 127554.1 NaN 7737 2753 10490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10493 51.033 NaN 301440 35 0 35238 0.261 + -1 STSLCCLYM 9 73 547.2222797039377 1092.4300064746753 2 547.2224731445312 MULTI HCD FTMS 0 0 0 10490 117882.921875 0.5295495313127763 4 -0.10496139526367188 3 Carbamidomethyl (C),Oxidation (M) _STSLC(Carbamidomethyl (C))CLYM(Oxidation (M))_ REV__ENSG00000198626|ENST00000366574|RYR2;REV__nc|ENSG00000198626|Q92736-2|RYR2 12.531546534597751 0.2520865569484384 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 24.181 0 0 2.2135 0 0 0 742.2233468889909 742.2233468889909 6.222412206649466 0 0 0 0 0 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.2135 - 65 NaN NaN 130648.3 NaN 7738 2753 10490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10494 51.036 NaN 277690 35 0 97091 0.261 + 1981 DAQADEAVL 9 55 466.22200075234315 930.4294485714863 2 466.22198486328125 MULTI HCD FTMS 0 0 0 10490 160890.640625 0.768714753401751 -2 0.05579376220703125 4 Unmodified _DAQADEAVL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF 47.594388314883695 0.03493607795751234 2 ADEAV{I|L} 6 3 61.604 0 0 6.621 0 0 314.12129409004064 0 314.12129409004064 0 40.63486257521106 0 0 0 2.079689690656103 0 0.3807196863200844 0 + ADEAV{I|L} 6.621 + + 94 NaN NaN 129104.1 NaN 7739 2753 10490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10495 51.04 NaN 250100 35 0 15790 0.261 + 8341 GYIEDLKKF 9 68 556.8026987758147 1111.5908446184294 2 556.8032836914062 MULTI HCD FTMS 0 0 0 10490 112135.9765625 1 0 0 5 Unmodified _GYIEDLKKF_ ENSG00000069849|ENST00000286371|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF;nc|ENSG00000069849|P54709-2|ATP1B3 63.960520009940105 0.0120409805053046 2 [YG]{I|L}ED{I|L}KK{M(Oxidation (M))|F} 9 0 + 96.604 0 0 8.6906 8.6906 96.524 0 0 0 73.03395642852614 12.98332479720628 12.98332479720628 27.25772496747986 0 2.1237125054200234 2 0.7742275032520141 0 + + [YG]{I|L}ED{I|L}KK{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]ED{I|L}KK{M(Oxidation (M))|F};[YG][WQ]RKK{M(Oxidation (M))|F};[YG][WQ]KRK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}ET{[MS]|[{M(Oxidation (M))|F}A]}KK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EY[VG]KK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EYK[VG]K{M(Oxidation (M))|F};[RH][MT][RP]{I|L}{[DS]|[MA]|[CV]|TT};{[QN]|[E{I|L}]|[KN]}DKK{I|L}{M(Oxidation (M))|F}[YG];{[QN]|[E{I|L}]|[KN]}DKK{I|L}[YG]{M(Oxidation (M))|F} 8.6906;6.2385;4.351;3.2011;2.8843;2.2555;1.1057;1.0437;0.95198;0.95198 +;-;-;-;-;-;-;-;-;- + 263 + NaN NaN 122788.9 NaN 7740 2753 10490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10496 51.043 NaN 347210 35 0 31986 0.261 + 24753 RYNERLDRLFI 11 77 498.94386410857646 1493.8097629259294 3 499.2784118652344 MULTI HCD FTMS 0 0 0 10490 38315.4453125 0.6482184878214607 -2 0.05579376220703125 6 Unmodified _RYNERLDRLFI_ ENSG00000132801|ENST00000255152|ZSWIM3 9.530100786504857 0.37404633115274044 2 R 1 10 12.659 0 0 0.84741 0 0 391.24867269086013 943.4387067449677 1334.6873794358278 0 0 0 0 0 0.3807196863200844 0 0 0.4247425010840047 + R 0.84741 + + 98 + NaN NaN 138615.9 NaN 7741 2753 10490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10498 51.048 NaN 3344300 35 0 804050 0.327 + 28386 TPEQQAAIL 9 56 485.7638333921787 969.5131138511574 2 485.7640075683594 MULTI HCD FTMS 0 0 0 10497 2994943.5 0.906441447279864 -1 0.02291107177734375 1 Unmodified _TPEQQAAIL_ ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF 57.72198328787511 0.020768266150574023 2 QQAA{I|L}{I|L} 6 3 67.256 0 0 6.9371 0 0 327.1468983380875 0 327.1468983380875 0 41.313506577119625 0 0 0 2.3807196863200843 0 0 0.3807196863200844 + QQAA{I|L}{I|L} 6.9371 + + 129 NaN NaN 584541.8 NaN 7742 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10499 51.052 NaN 909000 35 0 282670 0.261 + 28452 TPLHEIAL 8 84 447.2580785584229 892.5016041836458 2 447.2579650878906 MULTI HCD FTMS 0 0 0 10497 362096.53125 0.8123001074973175 -2 0.055805206298828125 2 Unmodified _TPLHEIAL_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF 60.38955033654506 0.06344887527228933 2 TP{[YC]|[HE]}{I|L}{I|L}A{I|L} 8 2 + 37.885 0 0 4.2449 4.2449 88.886 0 0 0 23.90600959017256 1.6875220940089974 1.6875220940089974 21.365458656182234 0 1.6237125054200234 0 0.3054621874040891 0 TP{[YC]|[HE]}{I|L}{I|L}A{I|L};TP{I|L}[HV][DV]{I|L} 4.2449;1.851 -;- 61 + NaN NaN 233145.7 NaN 7743 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10500 51.056 NaN 895730 35 0 83133 0.261 + -1 TCRACVLL 8 91 496.7548553692547 991.4951578053094 2 496.75506591796875 MULTI HCD FTMS 0 0 0 10497 373419.875 0.7679875347490593 -1 0.02291107177734375 3 2 Carbamidomethyl (C) _TC(Carbamidomethyl (C))RAC(Carbamidomethyl (C))VLL_ REV__ENST00000539966.5_1_13:99104488-99104563:-|nuORF 23.1484247019978 0.4234759064137959 2 TPEQQAA 7 -1 50.85 0 0 5.1286 0 0 0 263.13718591861567 263.13718591861567 5.719165085264997 0 0 0 0 1.416386562212267 0 0.23965182871044374 0 TPEQQAA 5.1286 - 505 + NaN NaN 240792.1 NaN 7744 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10501 51.059 NaN 312320 35 0 83075 0.261 + 23043 RDPDEPVLL 9 54 527.2821937234044 1052.5498345136086 2 527.2824096679688 MULTI HCD FTMS 0 0 0 10497 126514.34375 0.5650744971417633 3 -0.08205032348632812 4 Unmodified _RDPDEPVLL_ ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46033819-46034819:+|nuORF 13.042465956692817 0.2476723265019929 2 V{I|L}{I|L} 3 6 28.812 0 0 2.7374 0 0 709.3043080060562 0 709.3043080060562 0 24.20818753952375 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 2.7374 + + 10 NaN NaN 134637.8 NaN 7745 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10502 51.062 NaN 305120 35 0 23644 0.261 + 11244 IYLHDCIW 8 74 531.7573280617383 1061.5001031902766 2 531.7570190429688 MULTI HCD FTMS 0 0 0 10497 72222.546875 0.3159843872816066 6 -0.157440185546875 5 Unmodified _IYLHDCIW_ ENST00000558286.5_1_15:51634073-51676155:+|nuORF 34.18733598223924 0.30560024141787767 2 WSVR{I|L}W 6 6 27.327 0 0 2.5744 0 0 216.06008209495923 0 216.06008209495923 0 1.6651349873766819 0 0 0 0.6382104921644451 0 0.28872548999643577 0 WSVR{I|L}W 2.5744 - 160 + NaN NaN 125663.6 NaN 7746 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10503 51.066 NaN 396410 35 0 41202 0.261 -1 VPAEELVEM 9 82 516.7493426218322 1031.4841323104642 2 516.7494506835938 MULTI HCD FTMS 0 0 0 10497 115608.765625 0.9858400170014663 3 -0.08205032348632812 6 Oxidation (M) _VPAEELVEM(Oxidation (M))_ ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12 32.30548876998284 0.10066689432505688 2 GVE{M(Oxidation (M))|F} 4 -1 47.907 0 0 4.6445 0 0 581.3163294313612 0 581.3163294313612 0 35.934903007429035 0 0 0 1.5 0 0.6989700043360187 0 GVE{M(Oxidation (M))|F} 4.6445 - 123 + NaN NaN 153766.7 NaN 7747 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10504 51.069 NaN 331610 35 0 23953 0.261 + 12911 KYGIVQEF 8 54 492.26345096450143 982.5123489958029 2 492.2634582519531 MULTI HCD FTMS 0 0 0 10497 116071.546875 0.9243537400745174 -2 0.055805206298828125 7 Unmodified _KYGIVQEF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 60.07390631473393 0.06540289509817182 2 [YK]G{I|L}VQE{M(Oxidation (M))|F} 8 0 + 64.602 0 0 6.5752 6.5752 90.318 0 0 0 4.6040937697618745 56.530031718040235 4.6040937697618745 9.262137858390815 0 2.1237125054200234 0 0 0 + + [YK]G{I|L}VQE{M(Oxidation (M))|F};[YK]G{I|L}V[AG]E{M(Oxidation (M))|F} 6.5752;5.6325 +;- + 81 NaN NaN 133751.3 NaN 7748 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10505 51.072 NaN 517570 35 0 40006 0.261 + 33439 YGSRLDYFQ 9 84 574.7716788375401 1147.52880474188 2 575.271240234375 MULTI HCD FTMS 0 0 0 10497 91875.9765625 0.14936651236355464 -15 0.3894920349121094 8 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 PVH[DN]QVS{[DS]|[MA]|[CV]|TT} 10 10 40.41 0 0 3.5215 0 0 51.064536175212034 0 51.064536175212034 0 8.05948475261264 0 0 0 1.3807196863200843 0 0.4247425010840047 0.9291746928241126 PVH[DN]QVS{[DS]|[MA]|[CV]|TT} 3.5215 - 897 + NaN NaN 164665.5 NaN 7749 2754 10497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10507 51.077 NaN 657590 35 0 159060 0.327 + 30696 VPEQSAVTL 9 56 472.2584403312861 942.5023277293723 2 472.2583312988281 MULTI HCD FTMS 0 0 0 10506 443990.4375 0.8783942449099734 -4 0.10821151733398438 1 Unmodified _VPEQSAVTL_ ENSG00000165283|ENST00000356493|STOML2;nc|ENSG00000165283|Q9UJZ1-2|STOML2 41.95555342248728 0.056367691549927025 2 [{I|L}T]YYAVT 7 6 53.517 0 0 5.6782 0 0 0 128.07161141603106 128.07161141603106 40.2289423339799 0 0 0 0 1.8494850021680094 1.5228787452803376 0.3807196863200844 0 [{I|L}T]YYAVT 5.6782 - 89 NaN NaN 190626.7 NaN 7750 2755 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10508 51.082 NaN 271940 35 0 19080 0.261 + 35772 YYMIGEQKF 9 63 597.7787428499588 NaN 0 597.7787475585938 PEAK HCD FTMS 0 0 0 10506 125687.125 0.4959966525675518 6 -0.15089797973632812 2 Oxidation (M) _YYM(Oxidation (M))IGEQKF_ ENSG00000166741|ENST00000299964|NNMT 49.55428908609986 0.04763431861655271 2 KQW{I|L}{M(Oxidation (M))|F} 5 7 23.561 0 0 1.9741 0 0 165.08109302238 323.10370813541255 488.18480115779255 0 0 0 0 0 2.06295299324845 0 0 0 KQW{I|L}{M(Oxidation (M))|F} 1.9741 - 52 + NaN NaN 153651.5 NaN 7751 2755 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10509 51.085 NaN 161630 35 0 40375 0.262 -1 VRCVMATL 8 50 483.2492206895548 964.4838884459097 2 483.2489013671875 MULTI HCD FTMS 0 0 0 10506 61201.3359375 0.6092068670834913 -3 0.0853118896484375 3 Carbamidomethyl (C),Oxidation (M) _VRC(Carbamidomethyl (C))VM(Oxidation (M))ATL_ ENSG00000112685|ENST00000230449|EXOC2 6.723162845929126 0.5320176132289695 2 VS{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.7163 0 0 613.3381192582128 0 613.3381192582128 0 2.385606273598313 0 0 0 0 0 0 0 VS{M(Oxidation (M))|F} 2.7163 - 30 + NaN NaN 116409 NaN 7752 2755 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10510 51.089 NaN 72424 35 0 4250.9 0.261 -1 0 40 627.2603196807554 626.2530432141554 1 628.2623291015625 MULTI HCD FTMS 0 0 0 10506 31572.427734375 1 0 0 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95647.8 NaN 7753 2755 10506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10512 51.094 NaN 1457700 35 0 295480 0.327 + 31921 VYNSEYYHF 9 90 611.2641907432727 1220.5138285533453 2 611.2642822265625 MULTI HCD FTMS 0 0 0 10511 915017.1875 0.9321111149806861 1 -0.036251068115234375 1 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 206.74871869215147 9.242385646021313E-18 2 VYNSEYYH{M(Oxidation (M))|F} 9 0 + 122.96 0 0 10.074 10.074 91.757 0 0 0 5.268024924119672 5.268024924119672 5.268024924119672 5.268024924119672 0 2.8737125054200234 2 1.2302046884880937 0.7302046884880937 + + VYNSEYYH{M(Oxidation (M))|F};[YV]NSEYYH{M(Oxidation (M))|F};VYGGSEYYH{M(Oxidation (M))|F};[YV]NESYYH{M(Oxidation (M))|F};VYN[HD]ESVC(Carbamidomethyl (C))V;VYN[HD]EVSC(Carbamidomethyl (C))V;VYNSE[HD]VC(Carbamidomethyl (C))V;[YV]GGSEYYH{M(Oxidation (M))|F};VYGG[HD]ESVC(Carbamidomethyl (C))V;VYGG[HD]EVSC(Carbamidomethyl (C))V 10.074;9.6425;9.6201;8.3738;8.0744;7.8465;7.81;7.6298;7.624;7.3961 +;+;-;-;-;-;-;-;-;- + 5159 + NaN NaN 304828 NaN 7754 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10513 51.098 NaN 1312700 35 0 163660 0.261 + 18591 MVSDEYEQL 9 80 565.2395405618115 1128.464528190423 2 565.2395629882812 MULTI HCD FTMS 0 0 0 10511 763703.9375 0.7502887281476741 -2 0.04579925537109375 2 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 2 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 73.421 0 0 6.5063 6.5063 89.421 0 0 0 4.774619429583851 54.91746177989485 4.774619429583851 9.208187539523749 0 2.1505149978319906 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L};{[QN]|[E{I|L}]|[KN]}Q[Y{M(Oxidation (M))|F}]DSD{I|L};[Q{I|L}]E[Y{M(Oxidation (M))|F}]DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[Y{M(Oxidation (M))|F}]DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSD{I|L};[YE]Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSD{I|L};{[QN]|[E{I|L}]|[KN]}[AG][Y{M(Oxidation (M))|F}]DSD{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSD{I|L} 6.5063;5.6903;4.2729;4.2085;4.0272;3.8017;3.7459;3.5221;3.3925;2.8407 +;-;-;-;-;-;-;-;-;- + 449 NaN NaN 300816.2 NaN 7755 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10514 51.102 NaN 409060 35 0 97820 0.261 + 19180 NIDVREPEL 9 65 542.785249089283 1083.5559452453658 2 542.785400390625 MULTI HCD FTMS 0 0 0 10511 251024.75 1 0 0 3 Unmodified _NIDVREPEL_ ENSG00000153201|ENST00000283195|RANBP2 46.0223103267499 0.037698999139422325 2 {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L} 9 0 + 78.483 0 0 7.2431 7.2431 90.723 0 0 0 28.52974763683696 72.99832993881884 28.52974763683696 9.208187539523749 0 2.274227503252014 2 0 0.28872548999643577 + + {[QV]|[N{I|L}]|[RA]|[KV]}DVRE[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}DV[VG]E[EP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}R[Y{M(Oxidation (M))|F}]{I|L};{[QN]|[E{I|L}]|[KN]}[QA]RE[EP]{I|L};[EP][KS]RE[EP]{I|L};{[QN]|[E{I|L}]|[KN]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[Y{M(Oxidation (M))|F}]{I|L} 7.2431;6.3933;4.4086;2.6623;2.6623;1.3946 +;-;-;-;-;- + 131 NaN NaN 156200.7 NaN 7756 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10515 51.105 NaN 359410 35 0 53388 0.262 + 2050 DEFEYCWDTF 10 54 452.1693395967962 1353.4861893905886 3 452.16937255859375 MULTI HCD FTMS 0 0 0 10511 112146.2734375 0.8674767301146535 1 -0.036251068115234375 4 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 1.9063754702782614 0.46521295622613185 2 T{M(Oxidation (M))|F} 2 8 16.454 0 0 1.2156 0 0 1087.3594021364854 0 1087.3594021364854 0 10.76728783671072 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.2156 + + 11 + NaN NaN 160571 NaN 7757 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10516 51.108 NaN 399940 35 0 60506 0.261 + -1 TFQGCFCCC 9 60 591.6952212104395 1181.375889487679 2 591.6949462890625 MULTI HCD FTMS 0 0 0 10511 95809.0703125 0.8563225842986684 -1 0.016292572021484375 5 3 Carbamidomethyl (C) _TFQGC(Carbamidomethyl (C))FC(Carbamidomethyl (C))C(Carbamidomethyl (C))C_ REV__ENST00000343455.7_1_14:95562307-95562397:-|nuORF 0 0.3510170533115441 2 YEQ{I|L} 4 -1 27.409 0 0 2.3201 0 0 630.1159535138687 0 630.1159535138687 0 18.456837818197798 0 0 0 0.3252574989159953 0 0 0 YEQ{I|L} 2.3201 - 26 NaN NaN 155013.4 NaN 7758 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10517 51.112 NaN 241180 35 0 12567 0.261 -1 YPDRIMNTF 9 72 586.7735938013249 1171.5326346694496 2 586.77294921875 MULTI HCD FTMS 0 0 0 10511 110343.0859375 0.03267057724695907 104 -2.5118751525878906 6 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 35.61225514009592 0.08548698421724198 2 V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 5 -1 40.662 0 0 3.4708 0 0 545.2562733380875 0 545.2562733380875 0 22.078343878162343 0 0 0 0.8494850021680094 0 0.5 0 V{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.4708 - 176 NaN NaN 123560.1 NaN 7759 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10518 51.115 NaN 85700 35 0 9760.3 0.264 + 30371 VLKKKKKKKK 10 39 419.31559279656494 NaN 0 419.31549072265625 PEAK HCD FTMS 0 0 0 10511 56804.08984375 0.6242062448581425 -95 2.6177520751953125 7 Unmodified _VLKKKKKKKK_ ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF 0.776531954647913 0.3395196853010637 2 R 1 10 4.6041 0 0 0.55032 0 0 532.4971391069987 144.99317346744377 677.4903125744424 0 0 0 0 0 0 0 0 0 R 0.55032 - 1 + NaN NaN 105597.2 NaN 7760 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10519 51.118 NaN 245660 35 0 22401 0.261 -1 IPLRSSWVM 9 59 552.7966307647586 1103.578708596317 2 552.7970581054688 MULTI HCD FTMS 0 0 0 10511 64705.7109375 0.6408793826075754 -4 0.10160446166992188 8 Oxidation (M) _IPLRSSWVM(Oxidation (M))_ ENSG00000078369|ENST00000378609|GNB1;ENSG00000111664|ENST00000229264|GNB3;ENSG00000114450|ENST00000232564|GNB4;ENSG00000172354|ENST00000303210|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;nc|ENSG00000078369|P62873-2|GNB1;nc|ENSG00000111664|P16520-2|GNB3 28.494509381512117 0.11816142465008336 2 WV{M(Oxidation (M))|F} 3 -1 39.085 0 0 3.5417 0 0 653.3853626935562 0 653.3853626935562 0 15.897554856604174 0 0 0 1.2887254899964358 0 0 0 WV{M(Oxidation (M))|F} 3.5417 + + 41 NaN NaN 126415.5 NaN 7761 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10520 51.122 NaN 137250 35 0 9626.5 0.261 -1 GYEPESCFLL 10 44 607.7733931978481 1213.5322334624962 2 607.7741088867188 MULTI HCD FTMS 0 0 0 10511 43392.53125 0.6705180931129324 1 -0.036251068115234375 9 Carbamidomethyl (C) _GYEPESC(Carbamidomethyl (C))FLL_ nc|ENSG00000106348|P20839-5|IMPDH1 14.838274106304384 0.3723198072575719 2 {I|L}{I|L} 2 -1 24.464 0 0 2.0159 0 0 969.3561505155076 0 969.3561505155076 0 17.47425010840047 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.0159 + + 8 NaN NaN 112001 NaN 7762 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10521 51.125 NaN 149910 35 0 37628 0.263 -1 0 49 468.74282741273606 935.4711018922721 2 468.74237060546875 MULTI HCD FTMS 0 0 0 10511 65206.57421875 0.9818677581378015 2 -0.0591583251953125 10 NaN NaN 2 GV{I|L} 3 -1 26.198 0 0 2.8005 0 0 648.286912986525 0 648.286912986525 0 19.20818753952375 0 0 0 0 0 0 0 GV{I|L} 2.8005 - 30 NaN NaN 124213.4 NaN 7763 2756 10511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10523 51.13 NaN 1104100 35 0 222790 0.327 + 8582 HAVIQEYML 9 81 560.2786688205921 1118.542784707984 2 560.2788696289062 MULTI HCD FTMS 0 0 0 10522 481824.3125 1 0 0 1 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 71.92227651296345 0.008466197542043549 2 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 58.765 0 0 5.2537 5.2537 90.702 0 0 0 4.762036441594191 32.18765315847924 4.762036441594191 25.656753288559813 0 2.017220322351953 0 0.3252574989159953 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};[HA]V{I|L}{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{I|L};[RK][YT]EY{I|L}{M(Oxidation (M))|F};{[QS]|[NT]}[EP][WK]{M(Oxidation (M))|F}VV;[DN]{[TV]|[{I|L}S]}[WK]P{M(Oxidation (M))|F}{I|L};[HA]V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV]{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[SA]|[TG]}[HS]{I|L}{M(Oxidation (M))|F}VV 5.2537;2.9599;2.2872;1.3771;1.1962;0.50596;0.28406 +;-;-;-;-;-;- + 468 NaN NaN 257496.9 NaN 7764 2757 10522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10524 51.134 NaN 138960 35 0 14486 0.261 + -1 FDTDEMEQL 9 42 572.2292362904107 1142.4439196476212 2 572.2293701171875 MULTI HCD FTMS 0 0 0 10522 42733.66015625 0.4226719869107037 -4 0.10496139526367188 2 Oxidation (M) _FDTDEM(Oxidation (M))EQL_ REV__ENST00000404589.7_1_3:58487368-58487425:+|nuORF 14.838274106304384 0.23215694253501695 2 EQ{I|L} 3 -1 35.445 0 0 3.1026 0 0 754.2448577882739 0 754.2448577882739 0 27.998037644757048 0 0 0 0.5 0 0.4247425010840047 0 EQ{I|L} 3.1026 + + 28 NaN NaN 108354.2 NaN 7765 2757 10522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10525 51.138 NaN 161910 35 0 13151 0.261 -1 NCLDKCAQL 9 61 532.7474223905625 1063.480291847925 2 532.7486572265625 MULTI HCD FTMS 0 0 0 10522 55188.7421875 0.6928386187243072 2 -0.052501678466796875 3 Carbamidomethyl (C) _NCLDKC(Carbamidomethyl (C))AQL_ ENSG00000171819|ENST00000376819|ANGPTL7 11.494710602746466 0.2610445893512368 2 AQ{I|L} 3 -1 29.693 0 0 2.792 0 0 733.29301650215 0 733.29301650215 0 20.48455006504028 0 0 0 0.5 0 0 0 AQ{I|L} 2.792 + + 36 NaN NaN 114103.6 NaN 7766 2757 10522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10526 51.141 NaN 117430 35 0 23586 0.261 + 9750 HYGFCDVI 8 35 477.21292927862163 952.4113056240433 2 477.2134094238281 MULTI HCD FTMS 0 0 0 10522 37715.765625 0.8552713411558114 3 -0.07538986206054688 4 Unmodified _HYGFCDVI_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 2.302733041254933 0.5385759549224092 2 V{I|L} 2 6 17.959 0 0 1.8856 0 0 722.2452259748062 0 722.2452259748062 0 10.969100130080562 0 0 0 0 0 0 0 + V{I|L} 1.8856 + + 2 NaN NaN 98387.2 NaN 7767 2757 10522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10527 51.145 NaN 176900 35 0 26512 0.261 + 5023 FDEDERWTNN 10 63 442.5186107978392 1324.5340029937176 3 442.51806640625 MULTI HCD FTMS 0 0 0 10522 49211.80859375 0.9074289078625905 5 -0.12472152709960938 5 Unmodified _FDEDERWTNN_ ENSG00000196611|ENST00000315274|MMP1 1.9063754702782614 0.46521295622613185 2 T{M(Oxidation (M))|F} 2 9 16.454 0 0 1.2422 0 0 1058.4079481614895 0 1058.4079481614895 0 15.969100130080562 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.2422 - 14 + NaN NaN 108876.8 NaN 7768 2757 10522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10528 51.148 NaN 74849 35 0 6968.2 0.261 -1 FEQMYEEML 9 40 618.2539996721266 1234.4934464110531 2 618.25341796875 MULTI HCD FTMS 0 0 0 10522 32550.904296875 0.9410175734621625 1 -0.022907257080078125 6 Oxidation (M) _FEQM(Oxidation (M))YEEML_ ENSG00000004846|ENST00000404938|ABCB5;nc|ENSG00000004846|Q2M3G0-1|ABCB5 3.2813086475875832 0.32614229037259 2 N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 10.458 0 0 0.84711 0 0 858.3264027326187 0 858.3264027326187 0 10.45757490560675 0 0 0 0 0 0 0 N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 0.84711 - 2 NaN NaN 105893.8 NaN 7769 2757 10522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10530 51.153 NaN 1106200 35 0 158030 0.327 + 10668 IPVHDGYVL 9 83 506.7767086453708 1011.5388643575416 2 506.7767028808594 MULTI HCD FTMS 0 0 0 10529 623631 0.6320630769824264 2 -0.05248260498046875 1 Unmodified _IPVHDGYVL_ ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A 54.773552608820026 0.024892918755467567 2 [{I|L}P]VHDGYV{I|L} 9 0 + 31.225 0 0 3.0869 3.0869 80.883 0 0 0 0.8843154735291883 11.928571858695136 0.8843154735291883 1.7031030934389655 0 1.0682503180159344 0 0.3252574989159953 0 + + [{I|L}P]VHDGYV{I|L};[VP]H{I|L}DGYV{I|L};[VP][YN][NP]PV{I|L};[{I|L}P]VHD[{M(Oxidation (M))|F}T]A{I|L};[VP]H{I|L}D[{M(Oxidation (M))|F}T]A{I|L};[HT][{I|L}V]D[{I|L}P]A{M(Oxidation (M))|F};[HT]{NN|[MP]|[D{I|L}]|[EV]}V[{I|L}P]A{M(Oxidation (M))|F} 3.0869;2.9186;1.0234;0.89982;0.73146;0.21056;0.08705 +;-;-;-;-;-;- + 666 NaN NaN 255509.4 NaN 7770 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10531 51.157 NaN 518300 35 0 63764 0.261 + 12725 KYAMMFAEL 9 90 568.2615780253091 1134.508603117418 2 568.2615356445312 MULTI HCD FTMS 0 0 0 10529 234522.015625 0.8849738147104359 1 -0.02959442138671875 2 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 47.748688679222035 0.03472022231463587 2 E{M(Oxidation (M))|F}AE{I|L} 5 5 46.075 0 0 4.0612 0 0 527.2361927716812 0 527.2361927716812 0 14.13664226604736 0 0 0 0.9634679910804405 0 0.3252574989159953 0 E{M(Oxidation (M))|F}AE{I|L} 4.0612 - 515 NaN NaN 165197.5 NaN 7771 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10532 51.161 NaN 650880 35 0 77507 0.261 + 16450 LSQQPEPEL 9 56 520.7664676390707 1039.5183823449413 2 520.7666015625 MULTI HCD FTMS 0 0 0 10529 174564.1875 0.08471620920558136 8 -0.19020462036132812 3 Unmodified _LSQQPEPEL_ REV__ENSG00000167861|ENST00000425042|HID1;REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF;REV__nc|ENSG00000167861|Q8IV36-2|HID1;REV__nc|ENSG00000167861|Q8IV36-3|HID1 57.72198328787511 0.020768266150574023 2 VEPE{I|L} 5 -1 32.285 0 0 3.1057 0 0 454.21312148261876 0 454.21312148261876 0 18.305344137613027 0 0 0 1.079689690656103 0 0.3494850021680094 0 VEPE{I|L} 3.1057 - 39 NaN NaN 183299.8 NaN 7772 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10533 51.164 NaN 580410 35 0 221780 0.261 -1 MVCGMPEIS 9 56 512.2193809268459 1022.4242089204919 2 512.2194213867188 MULTI HCD FTMS 0 0 0 10529 186301.078125 0.5316474474408596 2 -0.05248260498046875 4 Carbamidomethyl (C) _MVC(Carbamidomethyl (C))GMPEIS_ ENSG00000103657|ENST00000443617|HERC1 10.823927491677226 0.26684000660059787 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.0509 0 0 758.3124973499824 0 758.3124973499824 0 1.0424906266283749 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 2.0509 - 297 + NaN NaN 164190.4 NaN 7773 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10534 51.167 NaN 309350 35 0 32190 0.261 + 28437 TPIRDGALTL 10 84 528.8059759582652 1055.5973989833303 2 528.8057861328125 MULTI HCD FTMS 0 0 0 10529 155599.53125 1 0 0 5 Unmodified _TPIRDGALTL_ ENSG00000171806|ENST00000310392|METTL18 49.74193281347159 0.07872806610313077 2 [{I|L}T]PRDQ{I|L}T{I|L} 9 4 + 68.285 0 0 6.4689 6.4689 89.332 0 0 0 18.741436528314566 38.54363829437203 18.741436528314566 9.208187539523749 0 1.25 1.3979400086720375 0.8494850021680094 0 [{I|L}T]PRDQ{I|L}T{I|L};[{I|L}T]PRD[AG]{I|L}T{I|L};[{I|L}T]PQ[RD]{I|L}T{I|L};[{I|L}T]PRT[PG]TT{I|L};[{I|L}T]P[AG][RD]{I|L}T{I|L} 6.4689;5.5965;5.5765;5.4986;4.7042 -;-;-;-;- 385 NaN NaN 133351.6 NaN 7774 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10535 51.171 NaN 466790 35 0 41463 0.261 + 10589 IPMDPEHVEL 10 78 598.2871472081631 1194.5597414831261 2 598.287841796875 MULTI HCD FTMS 0 0 0 10529 114856.8828125 0.6939406555054118 -2 0.0591583251953125 6 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 60.07390631473393 0.04115296186411585 2 {I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L} 10 0 + 50.996 0 0 4.269 4.269 88.182 0 0 0 34.23016644771252 3.2559818715471778 3.2559818715471778 15.528871982441359 0 1.9604093769761874 1.6989700043360187 1 0 + + {I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L};{I|L}{M(Oxidation (M))|F}PD[EP]HVE{I|L};{I|L}P{M(Oxidation (M))|F}{[ET]|[MV]}[PG]C(Carbamidomethyl (C)){[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}P{M(Oxidation (M))|F}{[ET]|[MV]}[QA]D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}P{M(Oxidation (M))|F}{[ET]|[MV]}{[DA]|[EG]}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}{M(Oxidation (M))|F}P{[ET]|[MV]}[PG]C(Carbamidomethyl (C)){[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}{M(Oxidation (M))|F}P{[ET]|[MV]}[QA]D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}{M(Oxidation (M))|F}P{[ET]|[MV]}{[DA]|[EG]}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4.269;2.9691;2.7363;2.7363;2.6317;2.1474;2.1474;2.0428 +;-;-;-;-;-;-;- + 302 + NaN NaN 155786.4 NaN 7775 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10536 51.174 NaN 287640 35 0 21081 0.261 + 22844 QYLSSIQHL 9 65 544.7902997046647 1087.5660464761293 2 544.7906494140625 MULTI HCD FTMS 0 0 0 10529 115505.3359375 0.91633635601692 -1 0.022907257080078125 7 Unmodified _QYLSSIQHL_ ENSG00000034693|ENST00000367591|PEX3 69.10491478415734 0.009377850133389008 2 [YQ]{I|L}SS{I|L}QH{I|L} 9 0 + 60.415 0 0 5.5551 5.5551 89.56 0 0 0 35.97804375441612 1.3237706491979395 1.3237706491979395 13.015384402724592 0 1.0044321917401078 1.2218487496163564 0.3252574989159953 0.3807196863200844 + + [YQ]{I|L}SS{I|L}QH{I|L};[YQ]{I|L}SS{I|L}[AG]H{I|L} 5.5551;4.3583 +;- + 175 + NaN NaN 132265.2 NaN 7776 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10537 51.177 NaN 266890 35 0 28741 0.261 + 29302 TYMKDLYQL 9 71 595.7918841297687 1189.5692153263374 2 595.7921142578125 MULTI HCD FTMS 0 0 0 10529 134787.6875 1 0 0 8 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 40.23920728925047 0.06424668180817725 2 [YT]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YQ{I|L} 9 0 + 60.48 0 0 5.0842 5.0842 91.205 0 0 0 35.26348096873846 12.944539621753535 12.944539621753535 37.74735947860492 0 1.7302046884880937 2 0 0.3054621874040891 + + [YT]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YQ{I|L};[YT]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[VS]{[MS]|[{M(Oxidation (M))|F}A]};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y[HQ][HT][{M(Oxidation (M))|F}V];{[QN]|[E{I|L}]|[KN]}[RH]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V] 5.0842;1.911;0.61595;0.28742 +;-;-;- + 257 + NaN NaN 118448.4 NaN 7777 2758 10529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10539 51.182 NaN 192900 35 0 74918 0.327 + 1982 DAQADEAVL 9 39 466.22200075234315 930.4294485714863 2 466.2220153808594 MULTI HCD FTMS 0 0 0 10538 131659.296875 0.6290511588315925 4 -0.09848785400390625 1 Unmodified _DAQADEAVL_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF 31.26834338654808 0.10542797264966089 2 DEAV{I|L} 5 4 57.633 0 0 6.1942 0 0 385.1586170880875 0 385.1586170880875 0 36.66386562212267 0 0 0 1.8252574989159953 0 0.3807196863200844 0 + DEAV{I|L} 6.1942 + + 55 NaN NaN 111413.5 NaN 7778 2759 10538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10540 51.187 NaN 182370 35 0 17812 0.261 -1 YWMHVQNTF 9 60 621.2741052049596 1240.533657476719 2 621.2733764648438 MULTI HCD FTMS 0 0 0 10538 45167.89453125 0.12433124668392118 23 -0.5912246704101562 2 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 37.97399986684836 0.07464525285885698 2 QNT{M(Oxidation (M))|F} 4 -1 40.433 0 0 3.2593 0 0 732.3090687482437 0 732.3090687482437 0 31.47095285566838 0 0 0 0.4247425010840047 0 0 0.4247425010840047 QNT{M(Oxidation (M))|F} 3.2593 + + 44 NaN NaN 112087 NaN 7779 2759 10538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10541 51.19 NaN 160460 35 0 6878.3 0.261 + -1 CIVERDMIK 9 59 582.297365267075 NaN 0 582.27734375 PEAK HCD FTMS 0 0 0 10538 7612.5947265625 0.5248053480575738 1 -0.02288818359375 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))IVERDMIK_ REV__ENST00000264167.8_1_2:178364445-178370280:+|nuORF 6.723162845929126 0.26266733336404485 2 C(Carbamidomethyl (C))VD{[VA]|[{I|L}G]}N 6 -1 19.385 0 0 1.6675 0 0 131.14031422546947 370.1407564752563 501.28107070072576 0 0 0 0 0 0 0 0 1 C(Carbamidomethyl (C))VD{[VA]|[{I|L}G]}N 1.6675 - 83 + NaN NaN 114493.2 NaN 7780 2759 10538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10542 51.194 NaN 240310 35 0 31913 0.261 + 14482 LFADLNIRS 9 63 524.7928018413637 1047.5710507495273 2 524.7926025390625 MULTI HCD FTMS 0 0 0 10538 47184.89453125 0.9758719307415824 1 -0.02288818359375 4 Unmodified _LFADLNIRS_ REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF 26.268140514670165 0.13340543277302316 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}SVQR 9 -1 + 52.208 0 0 4.9837 4.9837 86.932 0 0 0 26.332078602921168 17.587418566968154 17.587418566968154 9.208187539523749 0 1.4802046884880937 0 0 0.2614393726401688 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}SVQR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}SV[AG]R;{[DA]|[EG]}Q{[VA]|[{I|L}G]}{I|L}{I|L}YR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}ASVQR;{[DA]|[EG]}[AG]{[VA]|[{I|L}G]}{I|L}{I|L}YR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}[SG]QR;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}ASV[AG]R;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}QR 4.9837;4.1047;3.505;2.8803;2.626;2.0693;2.0013;1.6921 -;-;-;-;-;-;-;- 138 + NaN NaN 126551.7 NaN 7781 2759 10538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10543 51.197 NaN 92528 35 0 8778.8 0.261 -1 HYDYIDVEM 9 46 600.7478627722257 NaN 0 600.748046875 PEAK HCD FTMS 0 0 0 10538 25792.32421875 0.555962665454178 4 -0.09848785400390625 5 Oxidation (M) _HYDYIDVEM(Oxidation (M))_ ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1 19.256988751693697 0.19238547928067054 2 DV 2 -1 20.969 0 0 1.7482 0 0 691.2982024958202 291.06504236392817 982.3632448597484 0 0 0 0 0 1 0 0 0 DV 1.7482 + + 14 + NaN NaN 91135.4 NaN 7782 2759 10538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10544 51.2 NaN 40599 35 0 4153 0.261 -1 0 32 627.2603196807554 626.2530432141554 1 627.2576293945312 MULTI HCD FTMS 0 0 0 10538 7382.8896484375 0.17720210457646374 3 -0.0722198486328125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93965.1 NaN 7783 2759 10538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10546 51.205 NaN 1395900 35 0 349940 0.327 + 28387 TPEQQAAIL 9 49 485.7638333921787 969.5131138511574 2 485.76385498046875 MULTI HCD FTMS 0 0 0 10545 1129064.625 0.3417196260154814 5 -0.12474441528320312 1 Unmodified _TPEQQAAIL_ ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF 45.69961567697781 0.039180348357221985 2 QAA{I|L}{I|L} 5 4 59.38 0 0 6.1248 0 0 455.2030506818375 0 455.2030506818375 0 43.895840698003 0 0 0 2 0 0 0.3807196863200844 + QAA{I|L}{I|L} 6.1248 + + 75 NaN NaN 291064.7 NaN 7784 2760 10545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10547 51.21 NaN 529480 35 0 32671 0.261 + -1 TCRACVLL 8 81 496.7548553692547 991.4951578053094 2 496.75482177734375 MULTI HCD FTMS 0 0 0 10545 197240.140625 0.40565052771267607 5 -0.12474441528320312 2 2 Carbamidomethyl (C) _TC(Carbamidomethyl (C))RAC(Carbamidomethyl (C))VLL_ REV__ENST00000539966.5_1_13:99104488-99104563:-|nuORF 11.640296217721598 0.50814828952472 2 A{I|L}{I|L} 3 -1 28.812 0 0 2.9059 0 0 676.2788563459 0 676.2788563459 0 2.8946809624041236 0 0 0 0.5 0 0 0 A{I|L}{I|L} 2.9059 - 200 NaN NaN 177208.7 NaN 7785 2760 10545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10548 51.213 NaN 115000 35 0 44877 0.261 + 14345 LDVEHLGG 8 29 420.2164298333108 838.4183067334217 2 420.2164611816406 MULTI HCD FTMS 0 0 0 10545 24485.095703125 0.2832514693802335 7 -0.16397857666015625 3 Unmodified _LDVEHLGG_ ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.8469 0 0 673.339218453928 0 673.339218453928 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8469 - 1 + NaN NaN 110165.9 NaN 7786 2760 10545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10549 51.217 NaN 127480 35 0 11301 0.261 + 16536 LTPILLLINLF 11 37 635.412109375 NaN 0 635.412109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LTPILLLINLF_ REV__ENSG00000164002|ENST00000415550|EXO5 0.3070304955306653 0.3412491863730806 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104221.2 NaN 7787 2760 10545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10550 51.22 NaN 134250 35 0 24532 0.264 + 18774 NAAVGEPAF 9 34 438.2164992511035 874.4184455690071 2 438.2170104980469 MULTI HCD FTMS 0 0 0 10545 55147.7265625 0.9347601443275556 -3 0.07538986206054688 5 Unmodified _NAAVGEPAF_ ENSG00000071894|ENST00000616140|CPSF1 27.628801355627647 0.12213550946336599 2 {[QG]|[NA]}AV{[DA]|[EG]}[PA]{M(Oxidation (M))|F} 9 0 + 37.61 0 0 4.3011 4.3011 82.068 0 0 0 1.7069622716897541 1.7069622716897541 1.7069622716897541 1.7069622716897541 0 1.9247425010840047 0 0 0 + + {[QG]|[NA]}AV{[DA]|[EG]}[PA]{M(Oxidation (M))|F};QQV{[DA]|[EG]}[PA]{M(Oxidation (M))|F} 4.3011;4.1059 +;- + 35 NaN NaN 105018.8 NaN 7788 2760 10545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10551 51.223 NaN 256090 35 0 41441 0.261 -1 0 36 644.5128168737057 NaN 0 644.4533081054688 PEAK HCD FTMS 0 0 0 10545 13808.109375 1 0 0 6 NaN NaN 2 K 1 -1 5.4846 0 0 0.42615 0 0 597.6702127495613 558.2328585260374 1155.9030712755987 0 0 0 0 0 0 0 0 0 K 0.42615 - 1 + NaN NaN 126329.9 NaN 7789 2760 10545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10553 51.228 NaN 725530 35 0 175920 0.327 + 30697 VPEQSAVTL 9 46 472.2584403312861 942.5023277293723 2 472.2584228515625 MULTI HCD FTMS 0 0 0 10552 465178.4375 0.920312754159742 2 -0.05263519287109375 1 Unmodified _VPEQSAVTL_ ENSG00000165283|ENST00000356493|STOML2;nc|ENSG00000165283|Q9UJZ1-2|STOML2 60.07390631473393 0.0174780869009295 2 [{I|L}T]YYAVT 7 6 57.201 0 0 6.0691 0 0 0 128.07204553722775 128.07204553722775 42.93162091478545 0 0 0 0 1.8494850021680094 1.3979400086720375 1.0501648626366045 0 [{I|L}T]YYAVT 6.0691 - 127 NaN NaN 201995.3 NaN 7790 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10554 51.233 NaN 395110 35 0 70064 0.261 + 31922 VYNSEYYHF 9 62 611.2641907432727 1220.5138285533453 2 611.2642211914062 MULTI HCD FTMS 0 0 0 10552 214229.125 0.2182312543337737 6 -0.14101409912109375 2 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 137.42381684818497 0.00015474832393368816 2 VYNSEYYH{M(Oxidation (M))|F} 9 0 + 114.02 0 0 9.342 9.342 91.443 0 0 0 96.0616031431335 9.137342758552691 9.137342758552691 5.8534811358448735 0 2.754432191740108 2 0.4247425010840047 0.7614393726401688 + + VYNSEYYH{M(Oxidation (M))|F};VYGGSEYYH{M(Oxidation (M))|F};[YV]NSEYYH{M(Oxidation (M))|F};VYGG[HD]EVS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYGGSEYTS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYN[HD]EVS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYNSEYTS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYGG[HD]ESV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYN[HD]ESV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};VYGGSE[HD]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.342;8.8624;8.3763;7.3052;7.276;7.1574;7.1281;7.0956;6.9478;6.8057 +;-;+;-;-;-;-;-;-;- + 1003 + NaN NaN 145773.1 NaN 7791 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10555 51.236 NaN 545050 35 0 79791 0.263 + 712 AQARAPPRP 9 70 482.27798740059393 NaN 0 482.2664489746094 PEAK HCD FTMS 0 0 0 10552 12621.494140625 1 0 0 3 Unmodified _AQARAPPRP_ REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__ENSG00000182272|ENST00000329962|B4GALNT4 11.640296217721598 0.23883959125015683 2 VHNNVP 6 -1 19.105 0 0 1.9849 0 0 149.12859009175935 150.0668123834594 299.19540247521877 0 0 0 0 0 0 0 0 0 VHNNVP 1.9849 - 269 + NaN NaN 171304.7 NaN 7792 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10556 51.24 NaN 296000 35 0 105760 0.261 + 24187 RYFENPQVI 9 53 583.3038934829971 1164.593234032794 2 583.3042602539062 MULTI HCD FTMS 0 0 0 10552 96305.7109375 0.5711216586008423 -5 0.13460540771484375 4 Unmodified _RYFENPQVI_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 16.149105407346934 0.22083165093524068 2 N[QP]V{I|L} 5 4 31.695 0 0 2.7215 0 0 595.2745228498062 0 595.2745228498062 0 17.001962355242952 0 0 0 1 0 0 0.4247425010840047 + N[QP]V{I|L} 2.7215 + + 19 NaN NaN 129907.3 NaN 7793 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10557 51.243 NaN 201180 35 0 24023 0.264 + 35900 YYSPHGHILVL 11 49 433.5677468536842 1297.6814111612525 3 433.56793212890625 MULTI HCD FTMS 0 0 0 10552 37601.55859375 0.10214458878956974 12 -0.3053855895996094 5 Unmodified _YYSPHGHILVL_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 7.477065608646677 0.3861287967437539 2 V{I|L} 2 9 28.271 0 0 2.1786 0 0 1067.517322088271 0 1067.517322088271 0 14.291746928241125 0 0 0 0.7302046884880937 0 0 0 + V{I|L} 2.1786 + + 10 NaN NaN 111233.5 NaN 7794 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10558 51.246 NaN 277350 35 0 30828 0.261 + 2683 DVHGPDWHL 9 68 538.2513336976818 1074.4881144621636 2 538.2512817382812 MULTI HCD FTMS 0 0 0 10552 25016.765625 0.00571407555683465 66 -1.6902961730957031 6 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 25.399314129420986 0.14091189997036632 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 3 8 15.986 0 0 1.4878 0 0 0 682.3067288200427 682.3067288200427 -1.2671864199140987 0 -1.2671864199140987 0 0 0 1.3979400086720375 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 1.4878 - 149 NaN NaN 123444.4 NaN 7795 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10559 51.25 NaN 175830 35 0 26266 0.263 + 16422 LSLHASGF 8 57 416.22034200027946 NaN 0 416.22784423828125 PEAK HCD FTMS 0 0 0 10552 11570.98828125 0.4670388306232499 15 -0.3714599609375 7 Unmodified _LSLHASGF_ REV__ENSG00000166341|ENST00000299441|DCHS1 5.230669730166228 0.38822285293237185 2 H 1 -1 2.2185 0 0 0.26715 0 0 478.2532927878652 212.0928133600219 690.3461061478871 0 0 0 0 0 0 0 0 0 H 0.26715 + + 2 + NaN NaN 115829.9 NaN 7796 2761 10552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10561 51.255 NaN 1056200 35 0 137360 0.327 + 18592 MVSDEYEQL 9 73 565.2395405618115 1128.464528190423 2 565.2396850585938 MULTI HCD FTMS 0 0 0 10560 725753.875 0.7130052957491738 4 -0.08839035034179688 1 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 118.0683919894846 0.0016252157255221692 2 [{M(Oxidation (M))|F}V]SDEYEQ{I|L} 9 0 + 77.203 0 0 6.8414 6.8414 91.741 0 0 0 4.194699959806982 41.2255632348228 4.194699959806982 13.015384402724592 0 2.2059771852360797 0 1.274227503252014 0.3807196863200844 + + [{M(Oxidation (M))|F}V]SDEYEQ{I|L};[{M(Oxidation (M))|F}V]SDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}QY{M(Oxidation (M))|F}DSD{I|L};[Q{I|L}]EY{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}Y{M(Oxidation (M))|F}DSD{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}{M(Oxidation (M))|F}DSD{I|L};[YE]Q{I|L}{M(Oxidation (M))|F}DSD{I|L};{[QN]|[E{I|L}]|[KN]}[AG]Y{M(Oxidation (M))|F}DSD{I|L};[{M(Oxidation (M))|F}V]SDEYAAD{I|L} 6.8414;5.688;5.2254;5.0441;5.0023;5.0012;4.8022;4.5784;4.4094;4.2706 +;-;-;-;-;-;-;-;-;- + 527 NaN NaN 251995.3 NaN 7797 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10562 51.259 NaN 1331200 35 0 258120 0.261 + 33440 YGSRLDYFQ 9 90 574.7716788375401 1147.52880474188 2 574.772216796875 MULTI HCD FTMS 0 0 0 10560 467595.59375 0.5050144159564891 -8 0.2067718505859375 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 20.453626601364224 0.18364154288633264 2 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 8 76.661 0 0 6.6805 0 0 220.08383908387117 0 220.08383908387117 0 46.35029351276792 0 0 0 2.6307196863200843 0 1.75 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 6.6805 - 1563 + NaN NaN 292242.9 NaN 7798 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10563 51.263 NaN 222690 35 0 32988 0.263 + 2051 DEFEYCWDTF 10 44 452.1693395967962 1353.4861893905886 3 452.16937255859375 MULTI HCD FTMS 0 0 0 10560 61990.61328125 0.4795113815082784 7 -0.16389083862304688 3 Unmodified _DEFEYCWDTF_ ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B 0.6976657623105312 0.47161084886498755 2 T{M(Oxidation (M))|F} 2 8 16.454 0 0 1.2156 0 0 1087.3604092165635 0 1087.3604092165635 0 10.969100130080562 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.2156 + + 8 + NaN NaN 131408.1 NaN 7799 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10564 51.266 NaN 151130 35 0 18609 0.261 -1 IPLRSSWVM 9 54 552.7966307647586 1103.578708596317 2 552.7969970703125 MULTI HCD FTMS 0 0 0 10560 99827.921875 0.988748226567575 2 -0.045871734619140625 4 Oxidation (M) _IPLRSSWVM(Oxidation (M))_ ENSG00000078369|ENST00000378609|GNB1;ENSG00000111664|ENST00000229264|GNB3;ENSG00000114450|ENST00000232564|GNB4;ENSG00000172354|ENST00000303210|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;nc|ENSG00000078369|P62873-2|GNB1;nc|ENSG00000111664|P16520-2|GNB3 24.990960013464015 0.14443998892849796 2 WV{M(Oxidation (M))|F} 3 -1 38.06 0 0 3.4488 0 0 653.3857289044937 0 653.3857289044937 0 17.090606190045108 0 0 0 1.4247425010840047 0 0 0 WV{M(Oxidation (M))|F} 3.4488 + + 18 NaN NaN 101655.2 NaN 7800 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10565 51.269 NaN 328120 35 0 43569 0.261 + -1 DCDPSYHEC 9 70 591.6952212104395 1181.375889487679 2 591.6953735351562 MULTI HCD FTMS 0 0 0 10560 58718.4375 0.5248138196308086 5 -0.11464691162109375 5 2 Carbamidomethyl (C) _DC(Carbamidomethyl (C))DPSYHEC(Carbamidomethyl (C))_ REV__COL11A1|p.I509Sfs*19|1|0.36|ENSG00000060718|chr1:103014559-103014559|G/-|frameshift_variant;REV__ENSG00000060718|ENST00000370096|COL11A1;REV__ENSG00000130635|ENST00000371817|COL5A1;REV__nc|ENSG00000060718|P12107-2|COL11A1;REV__nc|ENSG00000060718|P12107-3|COL11A1;REV__nc|ENSG00000060718|P12107-4|COL11A1;REV__nc|ENSG00000130635|P20908-2|COL5A1 0.5247636613948944 0.34703895399870666 2 EQ{I|L} 3 -1 23.812 0 0 2.0156 0 0 793.1813832013687 0 793.1813832013687 0 13.354706403678874 0 0 0 0 0 0 0 EQ{I|L} 2.0156 - 23 NaN NaN 138699.3 NaN 7801 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10566 51.273 NaN 158430 35 0 9431.3 0.261 + 31880 VYNENLVHMI 10 49 624.3080496613613 1246.6015463895226 2 624.308837890625 MULTI HCD FTMS 0 0 0 10560 42736.65234375 0.20952606809701635 -8 0.2067718505859375 6 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 45.69961567697781 0.09594615698576985 2 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 10 0 + 54.186 0 0 4.3467 4.3467 82.945 0 0 0 48.701746761134714 7.269987279362624 7.269987279362624 3.5964300317415976 0 1.2302046884880937 1.6989700043360187 0 0 + + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]{[VA]|[{I|L}G]}V[NS]VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4.3467;4.0582;3.6116 +;-;- + 70 + NaN NaN 113016.4 NaN 7802 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10567 51.276 NaN 184860 35 0 18536 0.261 + 24207 RYFKGYFL 8 74 547.2949624090371 1092.5753718848741 2 547.2943725585938 MULTI HCD FTMS 0 0 0 10560 34484.02734375 0.42238553968526316 -5 0.12472152709960938 7 Unmodified _RYFKGYFL_ ENSG00000125772|ENST00000379019|GPCPD1 12.531546534597751 0.5015908124873912 2 YGA 3 6 21.198 0 0 1.9402 0 0 278.16463517911944 520.2613619440061 798.4259971231256 0 0 0 0 0 0.5 0 0 0 YGA 1.9402 - 42 + NaN NaN 113317.9 NaN 7803 2762 10560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10569 51.281 NaN 782910 35 0 170420 0.327 + 8583 HAVIQEYML 9 80 560.2786688205921 1118.542784707984 2 560.279052734375 MULTI HCD FTMS 0 0 0 10568 296115.6875 0.6145719089258287 6 -0.13762283325195312 1 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 53.832793166522166 0.026208976789938845 2 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 59.191 0 0 5.2918 5.2918 90.327 0 0 0 3.65279269351241 41.4981762117437 3.65279269351241 20.88113015865499 0 2.017220322351953 0 0.28872548999643577 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V{I|L}{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{I|L};[HA]V{[DA]|[EG]}[{I|L}A]Y{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[SA]|[TG]}{I|L}SH[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[SA]|[TG]}{I|L}SH{M(Oxidation (M))|F}VV;{[QS]|[NT]}[EP][WK]{M(Oxidation (M))|F}VV;{[QN]|[E{I|L}]|[KN]}[HN][YV]{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[SA]|[TG]}[HS]{I|L}{M(Oxidation (M))|F}VV;{[QN]|[E{I|L}]|[KN]}{[WN]|[YH]}{[NV]|[RG]}{M(Oxidation (M))|F}VV 5.2918;3.425;2.998;2.7289;0.98686;0.98686;0.83886;0.55318;0.36197;0.35485 +;-;-;-;-;-;-;-;-;- + 564 NaN NaN 205672.4 NaN 7804 2763 10568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10570 51.285 NaN 582980 35 0 158060 0.261 + 15043 LLQYVYNL 8 59 513.286876932335 1024.5592009314698 2 513.2868041992188 MULTI HCD FTMS 0 0 0 10568 204482.953125 0.7301832294487449 -3 0.07559967041015625 2 Unmodified _LLQYVYNL_ chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;ENSG00000104738|ENST00000649973|MCM4 9.347437153973935 0.5250182646323369 2 {I|L}{I|L}Q 3 5 32.447 0 0 3.1669 0 0 0 667.3135470025999 667.3135470025999 17.84318117920506 0 0 0 0 0.5 1.6989700043360187 0 0 + {I|L}{I|L}Q 3.1669 + + 18 + NaN NaN 176896.5 NaN 7805 2763 10568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10571 51.289 NaN 102210 35 0 9719.7 0.261 + -1 FDTDEMEQL 9 44 572.2292362904107 1142.4439196476212 2 572.2293090820312 MULTI HCD FTMS 0 0 0 10568 46850.515625 0.4633911641222598 2 -0.049144744873046875 3 Oxidation (M) _FDTDEM(Oxidation (M))EQL_ REV__ENST00000404589.7_1_3:58487368-58487425:+|nuORF 18.1463463914782 0.20357593197100715 2 EQ{I|L} 3 -1 39.253 0 0 3.4358 0 0 754.2509613201134 0 754.2509613201134 0 27.825834421237516 0 0 0 0.9247425010840047 0 0.3807196863200844 0 EQ{I|L} 3.4358 + + 19 NaN NaN 96813.5 NaN 7806 2763 10568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10572 51.292 NaN 126220 35 0 15415 0.261 -1 YYCQQYDN 8 69 577.218325156298 NaN 0 577.2689819335938 PEAK HCD FTMS 0 0 0 10568 11797.0029296875 0.5436824781138672 3 -0.062122344970703125 4 Carbamidomethyl (C) _YYC(Carbamidomethyl (C))QQYDN_ nc|ENSG00000242076|P01594|IGKV1-33 4.75600775471527 0.38822285293237185 2 D 1 -1 6.9061 0 0 0.59927 0 0 132.06804572099583 902.3228243463499 1034.3908700673458 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.59927 + + 14 + NaN NaN 110388 NaN 7807 2763 10568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10573 51.296 NaN 297670 35 0 34279 0.261 + 2684 DVHGPDWHL 9 65 538.2513336976818 1074.4881144621636 2 538.2517700195312 MULTI HCD FTMS 0 0 0 10568 28822.193359375 0.006583272715501833 68 -1.7259674072265625 5 Unmodified _DVHGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 25.399314129420986 0.14091189997036632 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[KC]WH 7 7 21.916 0 0 2.0397 0 0 0 128.07094247363867 128.07094247363867 8.843888618940381 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[KC]WH 2.0397 - 108 NaN NaN 128683 NaN 7808 2763 10568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10575 51.3 NaN 478190 35 0 52178 0.327 -1 KYAMMFAEL 9 79 568.2615780253091 1134.508603117418 2 568.2617797851562 MULTI HCD FTMS 0 0 0 10574 198405.109375 0.7486859006976652 7 -0.17397308349609375 1 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 32.78568957990786 0.09846250359632436 2 MT{I|L}AHC{M(Oxidation (M))|F}A 8 -1 37.305 0 0 3.2882 0 0 0 257.1136150251411 257.1136150251411 10.533956428526139 0 0 0 0 1.1989700043360187 0 0.4247425010840047 0 MT{I|L}AHC{M(Oxidation (M))|F}A 3.2882 - 404 + NaN NaN 155336.2 NaN 7809 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10576 51.305 NaN 331270 35 0 36006 0.261 + 10669 IPVHDGYVL 9 59 506.7767086453708 1011.5388643575416 2 506.7766418457031 MULTI HCD FTMS 0 0 0 10574 186773.9375 0.1892992965974645 8 -0.20026016235351562 2 Unmodified _IPVHDGYVL_ ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A 20.453626601364224 0.18364154288633264 2 {I|L}V{I|L} 3 6 28.188 0 0 2.7866 0 0 668.2902699201187 0 668.2902699201187 0 13.58349385648225 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.7866 - 38 NaN NaN 132285.4 NaN 7810 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10577 51.308 NaN 424290 35 0 43993 0.261 -1 VMYMQDYW 8 86 576.2304896432746 1150.4464263533491 2 576.2307739257812 MULTI HCD FTMS 0 0 0 10574 61684.01171875 0.6250114089239356 7 -0.17397308349609375 3 Oxidation (M) _VM(Oxidation (M))YMQDYW_ ENSG00000211584|ENST00000442218|SLC48A1 9.347437153973935 0.5250182646323369 2 SV[H{I|L}]SVS{[DS]|[MA]|[CV]|TT} 9 -1 27.725 0 0 2.4099 0 0 220.99706823852745 0 220.99706823852745 0 0.73023197994765 0 0 0 0 0 0.7302046884880937 0 SV[H{I|L}]SVS{[DS]|[MA]|[CV]|TT} 2.4099 - 369 + NaN NaN 155063 NaN 7811 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10578 51.312 NaN 127780 35 0 8453.9 0.261 + 26428 STHEKKITI 9 51 528.8059759582652 1055.5973989833303 2 528.8060913085938 MULTI HCD FTMS 0 0 0 10574 36492.0078125 0.23452517831733508 6 -0.15099334716796875 4 Unmodified _STHEKKITI_ REV__ENST00000324545.8_2_X:41088534-41088609:+|nuORF 8.745405648335112 0.2847203663274469 2 {I|L}T{I|L} 3 -1 27.435 0 0 2.599 0 0 710.3712025373062 0 710.3712025373062 0 10.445312593723983 0 0 0 0.4247425010840047 0 0 0 {I|L}T{I|L} 2.599 + + 19 NaN NaN 98086.8 NaN 7812 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10579 51.315 NaN 209700 35 0 10987 0.261 -1 0 51 556.2878541333231 555.280577666723 1 556.2896728515625 MULTI HCD FTMS 0 0 0 10574 23647.388671875 0.46274779967191915 -1 0.019603729248046875 5 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F} 4 -1 + 30.19 0 0 5.4368 5.4368 90.122 0 0 0 15.585456211725202 -8.226825097560422 -8.226825097560422 16.721675119240516 0 0.2742275032520141 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F};[{I|L}A]H{[ES]|[DT]|[{I|L}C]} 5.4368;2.4254 -;- 21 NaN NaN 114306.8 NaN 7813 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10580 51.318 NaN 155340 35 0 13238 0.261 + 14483 LFADLNIRS 9 47 524.7928018413637 1047.5710507495273 2 524.81103515625 MULTI HCD FTMS 0 0 0 10574 21995.875 0.45491586275316104 6 -0.15099334716796875 6 Unmodified _LFADLNIRS_ REV__ENST00000484368.1_1_1:172384469-172413172:-|nuORF 9.38312468134398 0.279288223203164 2 WQ{[VA]|[{I|L}G]}{I|L}{I|L}S 7 -1 32.479 0 0 3.1004 0 0 0 247.11586939029533 247.11586939029533 16.994332193581414 0 0 0 0 0 0 0.4247425010840047 0 WQ{[VA]|[{I|L}G]}{I|L}{I|L}S 3.1004 - 43 + NaN NaN 105772.8 NaN 7814 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10581 51.322 NaN 285600 35 0 44791 0.261 + 8921 HPDIIRPIT 9 62 531.3086571634212 1060.6027613936424 2 531.3096313476562 MULTI HCD FTMS 0 0 0 10574 56432.21484375 0.8207315830252176 -3 0.07223892211914062 7 Unmodified _HPDIIRPIT_ ENSG00000171903|ENST00000402119|CYP4F11 18.1463463914782 0.20357593197100715 2 HPD 3 6 30.234 0 0 2.8506 0 0 0 708.4411401552317 708.4411401552317 2.0293898105400388 0 0 0 0 0.8807196863200843 0 0 0 + HPD 2.8506 + + 54 + NaN NaN 125874.2 NaN 7815 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10582 51.325 NaN 105530 35 0 15862 0.262 -1 MYLSICCCFL 10 52 442.5186107978392 1324.5340029937176 3 442.5183410644531 MULTI HCD FTMS 0 0 0 10574 20308.11328125 0.37446640516062785 12 -0.2992210388183594 8 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))YLSIC(Carbamidomethyl (C))C(Carbamidomethyl (C))CFL_ ENSG00000118946|ENST00000377918|PCDH17;nc|ENSG00000118946|O14917-2|PCDH17 0.776531954647913 0.4711933975711956 2 T{M(Oxidation (M))|F} 2 -1 15.573 0 0 1.1757 0 0 1058.4082838548488 0 1058.4082838548488 0 12.474250108400469 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.1757 - 12 + NaN NaN 97311.8 NaN 7816 2764 10574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10584 51.33 NaN 363620 35 0 35391 0.327 + 10590 IPMDPEHVEL 10 72 598.2871472081631 1194.5597414831261 2 598.2874755859375 MULTI HCD FTMS 0 0 0 10583 151124.109375 0.9130594610821687 5 -0.12145233154296875 1 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 47.594388314883695 0.08653821083322558 2 {I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L} 10 0 + 49.664 0 0 4.1575 4.1575 82.046 0 0 0 40.199718873656636 2.664252385751098 2.664252385751098 1.9897000433601875 0 2.1861818737241734 0 1 0 + + {I|L}P{M(Oxidation (M))|F}D[EP]HVE{I|L};{I|L}{M(Oxidation (M))|F}PD[EP]HVE{I|L} 4.1575;3.9909 +;- + 140 + NaN NaN 140224.1 NaN 7817 2765 10583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10585 51.334 NaN 153490 35 0 9369.6 0.261 -1 YWMHVQNTF 9 47 621.2741052049596 1240.533657476719 2 621.2741088867188 MULTI HCD FTMS 0 0 0 10583 51990.2421875 0.1431107580650822 29 -0.7941818237304688 2 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 24.020572477871973 0.15282392193088168 2 QNT{M(Oxidation (M))|F} 4 -1 41.186 0 0 3.32 0 0 732.3067494123062 0 732.3067494123062 0 37.2062251842808 0 0 0 0.5 0 0 0.4247425010840047 QNT{M(Oxidation (M))|F} 3.32 + + 35 NaN NaN 115686.7 NaN 7818 2765 10583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10586 51.338 NaN 195930 35 0 9615.5 0.262 + 25448 SEVDLTRSF 9 66 527.2637997698846 1052.513046606569 2 527.7655029296875 MULTI HCD FTMS 0 0 0 10583 37167.51953125 0.664923402553756 -3 0.07541275024414062 3 Unmodified _SEVDLTRSF_ ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 51.487983226225225 0.029489205318603332 2 {[ES]|[DT]|[{I|L}C]}VD{I|L}TRS{M(Oxidation (M))|F} 9 0 + 82.372 0 0 7.8262 7.8262 96.306 0 0 0 67.42378574059975 14.973024840566467 14.973024840566467 49.023045569121386 0 2.788106835214472 0 0.28872548999643577 0 + + {[ES]|[DT]|[{I|L}C]}VD{I|L}TRS{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}V[KT]QQS{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}V{[RE]|[WV]}{[WT]|[RM]}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}VD{I|L}{[YC]|[HE]}[KP];MK{[RE]|[WV]}QQS{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}VRY{[ES]|[DT]|[{I|L}C]}[{I|L}A];{[RE]|[WV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QQS{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}V{[RE]|[WV]}{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}A];M[PS]RY{[ES]|[DT]|[{I|L}C]}[{I|L}A] 7.8262;3.1685;2.1136;1.5114;1.445;1.4394;0.73229;0.24161;0.18951 +;-;-;-;-;-;-;-;- + 233 + NaN NaN 109229.1 NaN 7819 2765 10583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10588 51.343 NaN 313850 35 0 71883 0.327 + 28388 TPEQQAAIL 9 49 485.7638333921787 969.5131138511574 2 485.7636413574219 MULTI HCD FTMS 0 0 0 10587 179217.734375 0.0542415516436598 11 -0.28912353515625 1 Unmodified _TPEQQAAIL_ ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF 17.11289562659939 0.2125047172822487 2 AA{I|L}{I|L} 4 5 43.928 0 0 4.5309 0 0 583.260545799025 0 583.260545799025 0 29.323806533759438 0 0 0 1.3494850021680094 0 0 0 + AA{I|L}{I|L} 4.5309 + + 24 NaN NaN 145117.2 NaN 7820 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10589 51.347 NaN 310310 35 0 32607 0.261 -1 IPMDPEHVEL 10 57 598.2871472081631 1194.5597414831261 2 598.286865234375 MULTI HCD FTMS 0 0 0 10587 128824.5078125 0.7783300504725101 6 -0.15774154663085938 2 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 29.84058131909904 0.23356904650364865 2 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 7 -1 40.45 0 0 3.3862 0 0 0 356.09128748111567 356.09128748111567 14.763582385535088 0 0 0 0 1 0 0.5 0 {I|L}{M(Oxidation (M))|F}VH[EP]{I|L} 3.3862 - 303 + NaN NaN 136657.3 NaN 7821 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10590 51.351 NaN 708120 35 0 44891 0.261 + 22299 QPERDWVL 8 86 521.7694012960316 1041.524249658863 2 521.7698364257812 MULTI HCD FTMS 0 0 0 10587 207810.734375 0.16987865656058043 -7 0.16061019897460938 3 Unmodified _QPERDWVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 21.74664581756881 0.4337896562907935 2 D[R{M(Oxidation (M))|F}]{I|L} 4 6 16.911 0 0 1.6237 0 0 492.2431812970719 0 492.2431812970719 0 3.416375079047498 0 0 0 0 0 0.3494850021680094 0.5 D[R{M(Oxidation (M))|F}]{I|L} 1.6237 - 99 NaN NaN 196742.4 NaN 7822 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10591 51.354 NaN 683340 35 0 68479 0.261 + 24389 RYIPTAAAF 9 85 505.27681951727675 1008.5390861013535 2 505.27679443359375 MULTI HCD FTMS 0 0 0 10587 122623.5078125 0.019198352798468935 30 -0.8304023742675781 4 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 2 TN[QT]YA{M(Oxidation (M))|F} 7 6 40.467 0 0 4.0125 0 0 165.14951516604646 0 165.14951516604646 0 36.48789141519238 0 0 0 1 0 0.6421590589602533 0.4247425010840047 TN[QT]YA{M(Oxidation (M))|F} 4.0125 - 228 + NaN NaN 188564.2 NaN 7823 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10592 51.358 NaN 187900 35 0 17090 0.261 -1 0 58 556.2878541333231 555.280577666723 1 556.2879028320312 MULTI HCD FTMS 0 0 0 10587 48426.4765625 0.9476414409263316 1 -0.026256561279296875 5 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}] 4 -1 + 27.447 0 0 4.943 4.943 90.392 0 0 0 27.447274948966935 27.447274948966935 27.447274948966935 27.447274948966935 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}] 4.943 - 12 NaN NaN 114407.1 NaN 7824 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10593 51.361 NaN 175200 35 0 10289 0.261 + 2505 DSIDLIHGAI 10 72 527.2821937234044 1052.5498345136086 2 527.2643432617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _DSIDLIHGAI_ REV__ENSG00000163092|ENST00000409195|XIRP2;REV__nc|ENSG00000163092|A4UGR9-2|XIRP2;REV__nc|ENSG00000163092|A4UGR9-3|XIRP2;REV__nc|ENSG00000163092|A4UGR9|XIRP2 9.38312468134398 0.42334543440173333 2 VD{I|L}TRS{M(Oxidation (M))|F} 7 -1 48.264 0 0 4.5854 0 0 216.1109338191166 0 216.1109338191166 0 11.900603912694478 0 0 0 0 0 0.3807196863200844 0 VD{I|L}TRS{M(Oxidation (M))|F} 4.5854 - 534 + NaN NaN 111527.8 NaN 7825 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10594 51.364 NaN 173100 35 0 9374.7 0.261 -1 YPDRIMNTF 9 58 586.7738624670574 NaN 0 586.7730712890625 PEAK HCD FTMS 0 0 0 10587 66671.8046875 0.850769371871545 -2 0.04251861572265625 7 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 18.373094154950223 0.19831836980174267 2 TN{M(Oxidation (M))|F}V 4 -1 23.047 0 0 1.9673 0 0 165.08007957493732 542.2338961236936 707.3139756986309 0 0 0 0 0 0 0 0 0.5 TN{M(Oxidation (M))|F}V 1.9673 - 17 + NaN NaN 119601.6 NaN 7826 2766 10587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10596 51.369 NaN 335000 35 0 71093 0.327 + 30698 VPEQSAVTL 9 58 472.2584403312861 942.5023277293723 2 472.25836181640625 MULTI HCD FTMS 0 0 0 10595 217686.71875 0.43067315147600677 8 -0.20687484741210938 1 Unmodified _VPEQSAVTL_ ENSG00000165283|ENST00000356493|STOML2;nc|ENSG00000165283|Q9UJZ1-2|STOML2 31.26834338654808 0.10542797264966089 2 [{I|L}T]D[NP]AVT{I|L} 9 5 + 62.91 0 0 6.6748 6.6748 92.886 0 0 0 13.669687155616401 29.899342049956857 13.669687155616401 23.750612633916994 0 1.5 1.3010299956639813 0.3807196863200844 0 [{I|L}T]D[NP]AVT{I|L};[{I|L}T][QP][DG]VT{I|L};[{I|L}T]D[KP]EQ{I|L};[{I|L}T]D[NP]A[{I|L}T]V;[{I|L}T]D[KP]E[AG]{I|L};[Q{I|L}][TP][DG]VT{I|L};[{I|L}T]D[KP]EAAV;[Q{I|L}][DV]VEQ{I|L};[Q{I|L}][DV]VE[AG]{I|L};[Q{I|L}][DV]VEAAV 6.6748;4.1548;3.8613;3.7509;2.8785;2.6419;2.1552;1.8421;0.85936;0.13602 -;-;-;-;-;-;-;-;-;- 115 NaN NaN 127990.8 NaN 7827 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10597 51.374 NaN 191670 35 0 28350 0.261 + 31923 VYNSEYYHF 9 56 611.2641907432727 1220.5138285533453 2 611.2637939453125 MULTI HCD FTMS 0 0 0 10595 79028.6484375 0.08050502506052082 12 -0.3188743591308594 2 Unmodified _VYNSEYYHF_ ENSG00000112655|ENST00000230419|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-2|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-6|PTK7 75.76082778847304 0.0072241045649327805 2 VYNSEYY{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 100.2 0 0 8.2096 8.2096 92.346 0 0 0 100.19971887365664 4.762036441594191 4.762036441594191 9.208187539523749 0 1.9291746928241125 2 0.4247425010840047 0.3807196863200844 + + VYNSEYY{[{M(Oxidation (M))|F}H]|[RQ]};VYGGSEYY{[{M(Oxidation (M))|F}H]|[RQ]};VYNSE[HD]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};VYN[HD]ESN{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};VYNSE[HD]GG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};VYGGSE[HD]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};VYN[HD]ESGG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};VYGG[HD]ESN{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]NSEYY{[{M(Oxidation (M))|F}H]|[RQ]};[YV]GGSEYY{[{M(Oxidation (M))|F}H]|[RQ]} 8.2096;7.4552;6.2623;6.0553;5.5114;5.5114;5.3044;5.3044;4.5309;3.7765 +;-;-;-;-;-;-;-;+;- + 182 + NaN NaN 117621.3 NaN 7828 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10598 51.377 NaN 258610 35 0 31442 0.261 + 24873 RYQEVIQEL 9 58 589.314343150653 1176.614133368106 2 589.3143310546875 MULTI HCD FTMS 0 0 0 10595 79976.390625 0.6997777959761562 -2 0.039234161376953125 3 Unmodified _RYQEVIQEL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 33.4449034751529 0.0954363425218424 2 {I|L}D{I|L}QE{I|L} 6 5 48.404 0 0 4.1138 0 0 447.2231617658219 0 447.2231617658219 0 37.946537861557985 0 0 0 1.4247425010840047 0 0 0 {I|L}D{I|L}QE{I|L} 4.1138 - 150 NaN NaN 122492.5 NaN 7829 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10599 51.381 NaN 133870 35 0 12997 0.261 -1 LPMSDQYVKL 10 51 605.312677667999 1208.6108024027978 2 605.3131103515625 MULTI HCD FTMS 0 0 0 10595 72239.4296875 0.9009976540231807 -3 0.06877517700195312 4 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 30.7034409873982 0.22608124881558994 2 {I|L}P{M(Oxidation (M))|F}SD[YQ]V[K{I|L}] 10 -1 + 52 0 0 4.3024 4.3024 90.584 0 0 0 46.313506577119625 7.269987279362624 7.269987279362624 51.99986893552975 0 1 0 0 0.2614393726401688 {I|L}P{M(Oxidation (M))|F}SD[YQ]V[K{I|L}] 4.3024 + + 54 + NaN NaN 104282.1 NaN 7830 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10600 51.384 NaN 71007 35 0 8083.6 0.263 -1 0 36 467.1018261809882 NaN 0 467.1014404296875 PEAK HCD FTMS 0 0 0 10595 37895.8984375 0.5356965565468306 -24 0.5971183776855469 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112822.6 NaN 7831 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10601 51.387 NaN 97646 35 0 11806 0.261 + -1 CTMDSSRTV 9 44 508.2118361478962 NaN 0 508.2118225097656 PEAK HCD FTMS 0 0 0 10595 14022.158203125 0.3985047381984655 66 -1.6833839416503906 6 Oxidation (M) _CTM(Oxidation (M))DSSRTV_ REV__ENSG00000176542|ENST00000316407|USF3 2.0597508629832335 0.2852655770354268 2 {I|L} 1 -1 3.4949 0 0 0.34452 0 0 416.07130305575487 482.2445162408813 898.3158192966362 0 0 0 0 0 0 0 0 0 {I|L} 0.34452 - 5 + NaN NaN 106341.2 NaN 7832 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10602 51.391 NaN 117370 35 0 12958 0.261 + 5296 FFGKCTPL 8 60 456.7370303350969 911.4595077369938 2 456.7372741699219 MULTI HCD FTMS 0 0 0 10595 26667.59375 0.5533458156028369 -3 0.06877517700195312 7 Unmodified _FFGKCTPL_ REV__ENSG00000107651|ENST00000369075|SEC23IP;REV__ENST00000475542.1_1_10:121689169-121691647:+|nuORF;REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP 28.486842064014134 0.3788298654084067 2 TP{I|L} 3 -1 37.435 0 0 4.1072 0 0 582.264805986902 0 582.264805986902 0 33.455612550363796 0 0 0 1 0 0.4247425010840047 0 TP{I|L} 4.1072 + + 12 NaN NaN 95415 NaN 7833 2767 10595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10604 51.396 NaN 1778900 35 0 277190 0.327 + 21688 QAAPDLHVL 9 82 482.26661663080546 962.5186803284109 2 482.2666015625 MULTI HCD FTMS 0 0 0 10603 924782.3125 1 0 0 1 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 88.90359156742426 0.00455469703666567 2 [QA]APD{I|L}HV{I|L} 9 0 + 48.801 0 0 5.0701 5.0701 87.879 0 0 0 8.377589903594753 6.751736484954378 6.751736484954378 9.490925311194175 0 1.579689690656103 0.9208187539523752 0.3494850021680094 0 + + [QA]APD{I|L}HV{I|L};[QA]A[YK][NG]V{I|L};[QA]A[YK]A[QA]{I|L};[H{I|L}]V[DP][NG]V{I|L};[H{I|L}]V[DP]A[QA]{I|L};[H{I|L}][DP]V[NG]V{I|L};[HV]{I|L}[DP][NG]V{I|L};[H{I|L}][DP]VA[QA]{I|L};[HV]{I|L}[DP]A[QA]{I|L};[HV][EP]V[NG]V{I|L} 5.0701;4.084;4.0794;3.7296;3.2837;2.8516;2.4255;2.4057;1.9796;1.5475 +;-;-;-;-;-;-;-;-;- + 898 + NaN NaN 355143.4 NaN 7834 2768 10603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10605 51.4 NaN 1634700 35 0 377820 0.261 + 7120 FRTSYSSGPF 10 71 574.7716788375401 1147.52880474188 2 574.7723388671875 MULTI HCD FTMS 0 0 0 10603 892725.375 0.9641647395552745 -2 0.05252838134765625 2 Unmodified _FRTSYSSGPF_ REV__ENSG00000115970|ENST00000405975|THADA;REV__ENST00000408045.7_1_2:43571220-43805671:-|nuORF;REV__nc|ENSG00000115970|Q6YHU6-2|THADA;REV__nc|ENSG00000115970|Q6YHU6-3|THADA;REV__nc|ENSG00000115970|Q6YHU6-5|THADA;REV__nc|ENSG00000115970|Q6YHU6-6|THADA 26.268140514670165 0.2654086933305545 2 [YR]{M(Oxidation (M))|F}STSVS 8 -1 89.66 0 0 7.8133 0 0 0 217.06089202251033 217.06089202251033 53.193897340162906 0 0 0 0 3.274227503252014 1 1.4802046884880937 0 [YR]{M(Oxidation (M))|F}STSVS 7.8133 - 796 NaN NaN 337174.2 NaN 7835 2768 10603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10606 51.404 NaN 473660 35 0 59758 0.261 + 18593 MVSDEYEQL 9 72 565.2395405618115 1128.464528190423 2 565.2398071289062 MULTI HCD FTMS 0 0 0 10603 248280.859375 0.24391956235511786 10 -0.2562828063964844 3 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 89.40071534611396 0.0045416704840156395 2 EYEDSD{I|L} 7 7 53.886 0 0 4.7751 0 0 259.1528797834 0 259.1528797834 0 34.46092228968646 0 0 0 1.9386218330464624 0 1.055462187404089 0 EYEDSD{I|L} 4.7751 - 234 NaN NaN 173963 NaN 7836 2768 10603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10607 51.407 NaN 500900 35 0 106320 0.261 + 8584 HAVIQEYML 9 68 560.2786688205921 1118.542784707984 2 560.2788696289062 MULTI HCD FTMS 0 0 0 10603 180058.625 0.37370182518550266 11 -0.2926025390625 4 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 53.832793166522166 0.026208976789938845 2 [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L} 9 0 + 56.265 0 0 5.0302 5.0302 90.364 0 0 0 3.2568864632742844 45.80706579873059 3.2568864632742844 25.63145569282383 0 2.0924778212679485 0 0 0.4247425010840047 + + [HA]V{I|L}QEY{M(Oxidation (M))|F}{I|L};[Q{I|L}]{[VA]|[{I|L}G]}HEY{M(Oxidation (M))|F}{I|L};[HA]V{I|L}{[DS]|[MA]|[CV]|TT}{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{I|L};[Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V{[DA]|[EG]}[{I|L}A]Y{M(Oxidation (M))|F}{I|L};[HA]V[VP]{[CA]|SS}Y{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}[EP][WK]{M(Oxidation (M))|F}VV;[HA]V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV]{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]{[CA]|SS}{I|L}{M(Oxidation (M))|F}VV;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NP][NG]{I|L}{M(Oxidation (M))|F}VV 5.0302;2.7387;2.6247;2.4215;2.4074;2.3556;0.41231;0.23333;0.19042;0.19042 +;-;-;-;-;-;-;-;-;- + 287 NaN NaN 164144.9 NaN 7837 2768 10603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10608 51.41 NaN 285430 35 0 89753 0.261 + 24188 RYFENPQVI 9 72 583.3038934829971 1164.593234032794 2 583.3038330078125 MULTI HCD FTMS 0 0 0 10603 133920.953125 0.7941912906888006 2 -0.05594635009765625 5 Unmodified _RYFENPQVI_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 16.149105407346934 0.22083165093524068 2 N[QP]V{I|L} 5 4 33.015 0 0 2.8349 0 0 595.2784290998062 0 595.2784290998062 0 17.097784055843093 0 0 0 1 0 0 0.3807196863200844 + N[QP]V{I|L} 2.8349 + + 193 NaN NaN 125887.9 NaN 7838 2768 10603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10609 51.413 NaN 84936 35 0 9141.7 0.263 -1 EEDAEMKSLEE 11 54 442.5186107978392 1324.5340029937176 3 442.5198059082031 MULTI HCD FTMS 0 0 0 10603 9985.7431640625 0.18412962808102062 16 -0.44286346435546875 6 Oxidation (M) _EEDAEM(Oxidation (M))KSLEE_ ENSG00000138385|ENST00000260956|SSB;ENST00000438469.2_1_1:146553889-146554591:-|nuORF;ENST00000470621.1_1_2:170665037-170666957:+|nuORF 0.5059551277355931 0.4167017191902429 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1026 0 0 1159.4555098069973 0 1159.4555098069973 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1026 + + 3 + NaN NaN 98439.9 NaN 7839 2768 10603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10611 51.419 NaN 722990 35 0 200400 0.327 + 10252 IIQNVYIY 8 72 513.286876932335 1024.5592009314698 2 513.2869262695312 MULTI HCD FTMS 0 0 0 10610 263222.71875 0.9399356371954475 3 -0.08224105834960938 1 Unmodified _IIQNVYIY_ REV__ENSG00000126773|ENST00000406854|PCNX4 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4254 0 0 859.5131479302964 0 859.5131479302964 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4254 - 146 + NaN NaN 205071.2 NaN 7840 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10612 51.423 NaN 333700 35 0 30337 0.261 + 31881 VYNENLVHMI 10 65 624.3080496613613 1246.6015463895226 2 624.30810546875 MULTI HCD FTMS 0 0 0 10610 133729.671875 0.6556398500869162 -1 0.02297210693359375 2 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 75.5705956163825 0.010984675281887875 2 VYNE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 10 0 + 89.531 0 0 7.182 7.182 87.546 0 0 0 3.634993639681312 3.634993639681312 3.634993639681312 3.634993639681312 0 2.809894379144197 2 0 0.3807196863200844 + + VYNE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};VYGGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]N[KT][EP]H{M(Oxidation (M))|F}{I|L};VYN[HQ]{I|L}[DV]{M(Oxidation (M))|F}{I|L};[YV]{[ET]|[MV]}{I|L}[HQ]NM{I|L};VYN[HQ]{I|L}{[ET]|[MV]}M{I|L} 7.182;6.8904;6.4468;6.1552;4.2787;3.79;3.1403;3.0026 +;+;-;-;-;-;-;- + 361 + NaN NaN 146526.2 NaN 7841 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10613 51.427 NaN 804240 35 0 42504 0.261 + 34391 YPEPANDLR 9 84 537.7641014445256 1073.5136499558512 2 537.7647094726562 MULTI HCD FTMS 0 0 0 10610 161044.34375 0.6386196676015102 -4 0.08847808837890625 3 Unmodified _YPEPANDLR_ REV__ENSG00000169550|ENST00000529533|MUC15;REV__nc|ENSG00000169550|Q8N387-2|MUC15;REV__nc|ENSG00000169550|Q8N387|MUC15 12.531546534597751 0.2520865569484384 2 N{M(Oxidation (M))|F}E 3 -1 22.792 0 0 2.1231 0 0 0 680.3735219137628 680.3735219137628 -0.6021024771874117 0 -0.6021024771874117 0 0 0 0 0.2614393726401688 0 N{M(Oxidation (M))|F}E 2.1231 - 741 + NaN NaN 208525.1 NaN 7842 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10614 51.43 NaN 147090 35 0 17234 0.262 -1 YNTYHHCEQC 10 50 452.1693395967962 1353.4861893905886 3 452.16986083984375 MULTI HCD FTMS 0 0 0 10610 41490.28125 0.3209366874802654 14 -0.3913154602050781 4 Carbamidomethyl (C) _YNTYHHC(Carbamidomethyl (C))EQC_ ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1 0.15932191953741626 0.4744603884079788 2 V 1 -1 4.6041 0 0 0.34017 0 0 686.1738857790637 565.2243136041624 1251.398199383226 0 0 0 0 0 0 0 0 0 V 0.34017 - 4 + NaN NaN 125259.7 NaN 7843 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10615 51.433 NaN 150720 35 0 13438 0.261 + 20381 NYVEKGFQI 9 65 549.284721215005 1096.55488949681 2 549.2843627929688 MULTI HCD FTMS 0 0 0 10610 48760.96875 0.6251281650135379 -1 0.02297210693359375 5 Unmodified _NYVEKGFQI_ ENSG00000139974|ENST00000267488|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 20.41453444215458 0.18397929046831515 2 [YN]V 3 6 39.705 0 0 3.6209 0 0 0 717.3556612604124 717.3556612604124 14.928702923165389 0 0 0 0 0.9247425010840047 2 0 0 + [YN]V 3.6209 + + 79 + NaN NaN 111558 NaN 7844 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10616 51.437 NaN 152650 35 0 18605 0.261 + 27926 TENDIRVMF 9 58 570.7714619756794 1139.5283710181586 2 570.7716674804688 MULTI HCD FTMS 0 0 0 10610 46118.15234375 0.4340614329301247 -1 0.02297210693359375 6 Oxidation (M) _TENDIRVM(Oxidation (M))F_ ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 47.594388314883695 0.03493607795751234 2 {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 50.908 0 0 4.4674 4.4674 86.185 0 0 0 2.4123773338100705 2.4123773338100705 2.4123773338100705 9.208187539523749 0 2.3494850021680094 0 0 0 + + {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4674;3.6594 +;- + 52 + NaN NaN 121531.7 NaN 7845 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10617 51.44 NaN 93086 35 0 6342.8 0.261 -1 AYPHNLMTF 9 43 555.2577693209265 1108.500985708653 2 555.257080078125 MULTI HCD FTMS 0 0 0 10610 26712.556640625 0.024543308583156963 98 -2.3269386291503906 7 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 24.020572477871973 0.15282392193088168 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 -1 26.427 0 0 2.384 0 0 695.3406849591812 0 695.3406849591812 0 22.931825014007217 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.384 + + 7 NaN NaN 92424.7 NaN 7846 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10618 51.443 NaN 147160 35 0 24528 0.263 -1 0 40 416.2187439675071 415.21146750090713 1 416.2278137207031 MULTI HCD FTMS 0 0 0 10610 22416.0234375 0.7613461061475443 -1 0.02297210693359375 8 NaN NaN 2 H 1 -1 2.2185 0 0 0.5343 0 0 63.039086985085255 212.09258447818596 275.13167146327123 0 0 0 0 0 0 0 0 0 H 0.5343 - 3 + NaN NaN 103379.8 NaN 7847 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10619 51.447 NaN 54506 35 0 5581.3 0.261 + -1 NRKKLHKNKL 10 41 440.9471478748558 NaN 0 440.72430419921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NRKKLHKNKL_ REV__ENST00000359028.6_1_7:91671982-91672039:+|nuORF 0.776531954647913 0.3395196853010637 2 T 1 -1 0.71334 0 0 0.081072 0 0 404.65273583584593 371.1565035455688 775.8092393814147 0 0 0 0 0 0 0 0 0 T 0.081072 - 2 + NaN NaN 94669.7 NaN 7848 2769 10610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10621 51.451 NaN 456630 35 0 97462 0.327 -1 0 69 560.2614399841591 559.254163517559 1 560.2788696289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 {[QS]|[NT]}{M(Oxidation (M))|F}{I|L} 4 -1 8.9621 0 0 1.6025 0 0 0 81.0217776135153 81.0217776135153 0.009672498885997527 0 0 0 0 0 0 0 0 {[QS]|[NT]}{M(Oxidation (M))|F}{I|L} 1.6025 - 42 NaN NaN 153114.6 NaN 7849 2770 10620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10622 51.456 NaN 373400 35 0 40677 0.261 -1 KYAMMFAEL 9 68 568.2615780253091 1134.508603117418 2 568.2619018554688 MULTI HCD FTMS 0 0 0 10620 109776.6875 0.41424466544962746 13 -0.3583412170410156 2 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}AE{I|L} 4 -1 30.165 0 0 2.6589 0 0 656.2638416974625 0 656.2638416974625 0 4.731975075880328 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}AE{I|L} 2.6589 + + 110 NaN NaN 146164.2 NaN 7850 2770 10620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10623 51.46 NaN 454590 35 0 26490 0.261 + 22638 QVVEEDPEL 9 83 529.2552559446437 1056.4959589560874 2 529.7661743164062 MULTI HCD FTMS 0 0 0 10620 21068.93359375 0.5328488642334935 -4 0.1084747314453125 3 Unmodified _QVVEEDPEL_ ENSG00000012779|ENST00000374391|ALOX5;ENST00000498461.1_1_10:45938876-45939636:+|nuORF;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5 51.629811660486645 0.02929079705179888 2 D[EP]{I|L} 4 5 27.039 0 0 2.5593 0 0 584.2784053971677 0 584.2784053971677 0 0.831049931792549 0 0 0 0.9247425010840047 0 0.6109243748081782 0 + D[EP]{I|L} 2.5593 + + 575 NaN NaN 149397.5 NaN 7851 2770 10620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10624 51.463 NaN 139610 35 0 23262 0.261 + 25053 SAAPAEQYL 9 41 475.23492042563754 948.4552879180751 2 475.2344970703125 MULTI HCD FTMS 0 0 0 10620 66991.46875 0.9169749660475014 -2 0.05594635009765625 4 Unmodified _SAAPAEQYL_ ENSG00000138081|ENST00000403359|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11 28.494509381512117 0.11816142465008336 2 {[SA]|[TG]}A[PA]EQY{I|L} 9 0 + 52.91 0 0 5.5785 5.5785 83.945 0 0 0 1.706962271689747 14.520534381044499 1.706962271689747 1.706962271689747 0 1.8807196863200843 0 0 0 + + {[SA]|[TG]}A[PA]EQY{I|L};[QT][PA]EQY{I|L};{[SA]|[TG]}A[PA]E[AG]Y{I|L};[QT][PA]E[AG]Y{I|L};[PS]{[NV]|[RG]}EQY{I|L};[PS]{[NV]|[RG]}E[AG]Y{I|L} 5.5785;5.3986;4.6077;4.422;4.3683;3.3918 +;-;-;-;-;- + 79 NaN NaN 126293.2 NaN 7852 2770 10620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10625 51.466 NaN 183430 35 0 19904 0.261 + 27927 TENDIRVMF 9 53 570.7714619756794 1139.5283710181586 2 571.2721557617188 MULTI HCD FTMS 0 0 0 10620 54096.875 0.8552954882001919 -1 0.0329742431640625 5 Oxidation (M) _TENDIRVM(Oxidation (M))F_ ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 47.594388314883695 0.03493607795751234 2 {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 49.613 0 0 4.3538 4.3538 88.526 0 0 0 7.5 7.5 7.5 16.70818753952375 0 2.242992819099939 0 0.3252574989159953 0.3807196863200844 + + {[ET]|[MV]}ND[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD[R{I|L}]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.3538;2.8876 +;- + 45 NaN NaN 118091.1 NaN 7853 2770 10620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10626 51.469 NaN 104800 35 0 19381 0.263 + 3390 EETKAVDVFHQ 11 50 434.8821668543799 NaN 0 434.8819274902344 PEAK HCD FTMS 0 0 0 10620 36757.4453125 0.5642509907021181 -7 0.17059707641601562 6 Unmodified _EETKAVDVFHQ_ REV__ENSG00000187961|ENST00000338591|KLHL17;REV__ENST00000463212.1_1_1:897013-897649:+|nuORF 1.1097533296519684 0.33897209286470975 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102619.7 NaN 7854 2770 10620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10628 51.474 NaN 419810 35 0 52153 0.327 + 20567 PEERNYHI 8 72 529.2552559446437 1056.4959589560874 2 528.7716064453125 MULTI HCD FTMS 0 0 0 10627 30486.83203125 0.5803780362910794 -2 0.0559539794921875 1 Unmodified _PEERNYHI_ ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B 23.1484247019978 0.4234759064137959 2 GV[WQ]VVG{M(Oxidation (M))|F} 8 8 35.126 0 0 3.3247 0 0 166.04759892615363 0 166.04759892615363 0 5.873278429480422 0 0 0 0 0 0 0 GV[WQ]VVG{M(Oxidation (M))|F} 3.3247 - 257 + NaN NaN 154020.5 NaN 7855 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10629 51.479 NaN 170080 35 0 30335 0.261 + 2246 DLEGHLLAL 9 49 490.7742384490342 979.5339239648684 2 490.7742614746094 MULTI HCD FTMS 0 0 0 10627 89497.953125 0.7885011926215635 1 -0.026287078857421875 2 Unmodified _DLEGHLLAL_ ENSG00000204131|ENST00000633930|NHSL2 15.847184025352803 0.2234401846867398 2 E{I|L}A{I|L} 4 5 36.23 0 0 3.6987 0 0 535.2762318341812 0 535.2762318341812 0 28.782672239435314 0 0 0 0.5 0 0.3807196863200844 0 E{I|L}A{I|L} 3.6987 - 24 NaN NaN 112875.7 NaN 7856 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10630 51.482 NaN 402170 35 0 53879 0.261 + 29029 TYFDKNYNL 9 65 589.2797975994221 1176.545042265644 2 589.2802124023438 MULTI HCD FTMS 0 0 0 10627 134453.578125 0.6069062667639218 -1 0.022979736328125 3 Unmodified _TYFDKNYNL_ ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 49.52724829834842 0.03223213920720493 2 [YT]{M(Oxidation (M))|F}DKNYN{I|L} 9 0 + 63.749 0 0 5.4183 5.4183 87.571 0 0 0 17.757732469996256 31.810611248104465 17.757732469996256 9.208187539523749 0 1.5941876774005248 2 0 0.3807196863200844 + + [YT]{M(Oxidation (M))|F}DKNYN{I|L};[YT]{M(Oxidation (M))|F}DKNYGG{I|L};[YT]{M(Oxidation (M))|F}DKGGYN{I|L};[YT]{M(Oxidation (M))|F}DKGGYGG{I|L};[YT]{M(Oxidation (M))|F}DK{M(Oxidation (M))|F}[SG]{[NV]|[RG]};{[QN]|[E{I|L}]|[KN]}E[WP]NYN{I|L};{[QN]|[E{I|L}]|[KN]}Q{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{[QN]|[E{I|L}]|[KN]}E[WP]NYGG{I|L};{[QN]|[E{I|L}]|[KN]}E[WP]GGYN{I|L};{[QN]|[E{I|L}]|[KN]}E[WP]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 5.4183;4.6357;4.6357;3.8567;2.9229;1.7827;1.0549;1.0001;1.0001;0.79909 +;-;-;-;-;-;-;-;-;- + 508 NaN NaN 143478.2 NaN 7857 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10631 51.486 NaN 109300 35 0 18894 0.262 + 7126 FSAAWYLI 8 36 485.75408031496937 NaN 0 485.763671875 PEAK HCD FTMS 0 0 0 10627 5698.45947265625 1 0 0 4 Unmodified _FSAAWYLI_ ENSG00000112685|ENST00000230449|EXOC2 5.230669730166228 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.72096 0 0 131.07549645288572 722.3111355550571 853.3866320079428 0 0 0 0 0 0 0 0 0 + {I|L} 0.72096 + + 3 + NaN NaN 94733.3 NaN 7858 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10632 51.489 NaN 238220 35 0 36189 0.261 + 8922 HPDIIRPIT 9 63 531.3086571634212 1060.6027613936424 2 531.308837890625 MULTI HCD FTMS 0 0 0 10627 33148.921875 0.4821070234683725 4 -0.10167694091796875 5 Unmodified _HPDIIRPIT_ ENSG00000171903|ENST00000402119|CYP4F11 18.1463463914782 0.20357593197100715 2 HPD 3 6 25.718 0 0 2.4249 0 0 0 708.4415079585046 708.4415079585046 17.759621790487685 0 0 0 0 0.7302046884880937 0 0 0 + HPD 2.4249 + + 32 + NaN NaN 113221.1 NaN 7859 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10633 51.492 NaN 141550 35 0 26091 0.262 + -1 GPQGGRML 8 36 416.21254264393593 NaN 0 416.22015380859375 PEAK HCD FTMS 0 0 0 10627 15850.62890625 1 0 0 6 Oxidation (M) _GPQGGRM(Oxidation (M))L_ REV__ENST00000360862.9_2_16:3534964-3535998:+|nuORF;REV__ENST00000407558.8_1_16:3534861-3535998:+|nuORF 2.577480529830294 0.38822285293237185 2 H 1 -1 2.7642 0 0 0.33287 0 0 478.2392199540844 212.09247766666252 690.3316976207469 0 0 0 0 0 0 0 0 0 H 0.33287 - 1 + NaN NaN 109301.2 NaN 7860 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10634 51.496 NaN 63681 35 0 5264 0.261 + -1 CHCCPCCCC 9 35 601.6412911381761 NaN 0 601.7789306640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))HC(Carbamidomethyl (C))C(Carbamidomethyl (C))PC(Carbamidomethyl (C))CCC_ REV__ENSG00000197191|ENST00000650725|CYSRT1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101279.6 NaN 7861 2771 10627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10636 51.501 NaN 2025800 35 0 178410 0.327 + 22300 QPERDWVL 8 105 521.7694012960316 1041.524249658863 2 521.7694091796875 MULTI HCD FTMS 0 0 0 10635 1093502.125 0.8939031590443552 -1 0.026287078857421875 1 Unmodified _QPERDWVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 56.17704186161178 0.08952674942142515 2 {[RE]|[WV]}D[QP]WV{I|L} 8 4 + 43.689 0 0 4.1947 4.1947 88.504 0 0 0 11.798250930662533 22.99105406746169 11.798250930662533 18.239087409443187 0 0.8494850021680094 1.3010299956639813 1.1505149978319906 1 {[RE]|[WV]}D[QP]WV{I|L};[RD]E[QP]WV{I|L};QPE[RD]WV{I|L};{[RE]|[WV]}D{[RE]|[WV]}[QP]{I|L};E[QP][RD]WV{I|L};[WD]V{[RE]|[WV]}[QP]{I|L};[RD]E{[RE]|[WV]}[QP]{I|L} 4.1947;2.4435;2.2486;1.7643;1.2106;0.10618;0.013137 -;-;+;-;-;-;- + 561 NaN NaN 390007.2 NaN 7862 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10637 51.505 NaN 914520 35 0 41819 0.261 + 7415 FVPANDNANL 10 83 537.7641014445256 1073.5136499558512 2 537.7644653320312 MULTI HCD FTMS 0 0 0 10635 221180.828125 0.8770902699711505 -1 0.026287078857421875 2 Unmodified _FVPANDNANL_ REV__PCDHGA2|p.D234N|1|0.2|ENSG00000081853|chr5:141339671-141339671|G/A|missense_variant 13.042465956692817 0.38911719078024076 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}D 5 -1 16.203 0 0 1.5093 0 0 0 525.2416037185907 525.2416037185907 1.7613648864203686 0 0 0 0 0 1.0969100130080565 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}D 1.5093 - 611 NaN NaN 224822.1 NaN 7863 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10638 51.509 NaN 501170 35 0 48336 0.261 + 24390 RYIPTAAAF 9 89 505.27681951727675 1008.5390861013535 2 505.27667236328125 MULTI HCD FTMS 0 0 0 10635 83941.390625 0.013142149171568276 36 -0.9411048889160156 3 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 22.736283301280096 0.1639198954644489 2 AA{M(Oxidation (M))|F} 3 6 37.747 0 0 3.7428 0 0 701.3863749830095 0 701.3863749830095 0 17.96688263096584 0 0 0 1.305462187404089 0 0 0 + AA{M(Oxidation (M))|F} 3.7428 + + 234 NaN NaN 155652.8 NaN 7864 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10639 51.512 NaN 205500 35 0 15437 0.261 + 35049 YTKQHWSLQ 9 54 595.8036785966647 NaN 0 595.7918701171875 PEAK HCD FTMS 0 0 0 10635 7712.52734375 0.6190073845463148 -1 0.026287078857421875 4 Unmodified _YTKQHWSLQ_ REV__ENSG00000099956|ENST00000644036|SMARCB1;REV__nc|ENSG00000099956|Q12824-2|SMARCB1 6.723162845929126 0.26266733336404485 2 QY[EC]{I|L}Y 6 -1 19.169 0 0 1.6114 0 0 131.12115073273782 256.13019739322505 387.25134812596286 0 0 0 0 0 0 0 0.4247425010840047 0 QY[EC]{I|L}Y 1.6114 - 31 + NaN NaN 115949.1 NaN 7865 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10640 51.515 NaN 107560 35 0 10689 0.261 + -1 CTPSWPQPI 9 41 543.2578013250454 1084.5010497168907 2 543.2576293945312 MULTI HCD FTMS 0 0 0 10635 25057.76171875 0.545759009661659 3 -0.07538986206054688 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))TPSWPQPI_ REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF 6.2057823575117 0.30397260197431997 2 G 1 -1 2.4743 0 0 0.22815 0 0 564.7463022577095 459.7046297662719 1024.4509320239815 0 0 0 0 0 0 0 0 0 G 0.22815 - 6 + NaN NaN 93863.9 NaN 7866 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10641 51.519 NaN 96880 35 0 8008.3 0.261 -1 TPMFREYSL 9 43 580.2760784282957 NaN 0 580.2758178710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 10.150570793230772 0.24605859276004066 2 S 1 -1 9.6041 0 0 0.82898 0 0 131.09373873829105 937.3911226861936 1068.4848614244847 0 0 0 0 0 0.5 0 0 0 S 0.82898 + + 5 + NaN NaN 120922.1 NaN 7867 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10642 51.522 NaN 143410 35 0 7726.4 0.261 -1 YPDRIMNTF 9 52 586.7738624670574 NaN 0 586.7743530273438 PEAK HCD FTMS 0 0 0 10635 41499.09375 0.5295515561399714 4 -0.09896087646484375 7 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 12.872603262515298 0.2328680032845109 2 N{M(Oxidation (M))|F}{I|L} 3 -1 16.198 0 0 1.3826 0 0 266.12797288157714 528.2210787408811 794.3490516224583 0 0 0 0 0 0.5 0 0 0 N{M(Oxidation (M))|F}{I|L} 1.3826 - 29 + NaN NaN 124245.4 NaN 7868 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10643 51.525 NaN 61025 35 0 9814.8 0.261 + -1 CTMDSSRTV 9 35 508.2118361478962 NaN 0 508.21246337890625 PEAK HCD FTMS 0 0 0 10635 27085.5234375 0.7697609219687619 71 -1.7506752014160156 8 Oxidation (M) _CTM(Oxidation (M))DSSRTV_ REV__ENSG00000176542|ENST00000316407|USF3 2.0597508629832335 0.2852655770354268 2 V 1 -1 0.9691 0 0 0.095533 0 0 521.1244036416924 391.19687830142817 912.3212819431205 0 0 0 0 0 0 0 0 0 V 0.095533 + + 1 + NaN NaN 114947.8 NaN 7869 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10644 51.529 NaN 78263 35 0 7243.5 0.261 -1 SSCHMHQATCF 11 44 442.16614025781826 1323.4765913736549 3 442.16632080078125 MULTI HCD FTMS 0 0 0 10635 5833.32763671875 0.3113535982329554 1 -0.032886505126953125 9 Carbamidomethyl (C),Oxidation (M) _SSC(Carbamidomethyl (C))HM(Oxidation (M))HQATCF_ FSTL3|p.R225H|1|0.2|ENSG00000070404|chr19:681501-681501|G/A|missense_variant 0.5059551277355931 0.4167017191902429 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.17 0 0 1158.397472576583 0 1158.397472576583 0 5.0269751594335315 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.17 + + 10 + NaN NaN 100653.9 NaN 7870 2772 10635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10646 51.534 NaN 118590 35 0 13362 0.327 + 30122 VGATGPEVTL 10 45 472.2584403312861 942.5023277293723 2 472.25823974609375 MULTI HCD FTMS 0 0 0 10645 55780.91796875 0.11035741579354472 14 -0.3835296630859375 1 Unmodified _VGATGPEVTL_ ENSG00000204961|ENST00000532602|PCDHA9;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9 5.731851221503515 0.44496410492002586 2 VT{I|L} 3 7 31.198 0 0 3.3101 0 0 611.2890492169937 0 611.2890492169937 0 24.20818753952375 0 0 0 0.5 0 0 0 + VT{I|L} 3.3101 + + 15 NaN NaN 103609.7 NaN 7871 2773 10645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10647 51.538 NaN 90551 35 0 9418.8 0.261 + 5297 FFGKCTPL 8 42 456.7370303350969 911.4595077369938 2 456.73638916015625 MULTI HCD FTMS 0 0 0 10645 26768.451171875 0.5554385815602837 3 -0.06607437133789062 2 Unmodified _FFGKCTPL_ REV__ENSG00000107651|ENST00000369075|SEC23IP;REV__ENST00000475542.1_1_10:121689169-121691647:+|nuORF;REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP 11.640296217721598 0.50814828952472 2 T[{I|L}P] 3 -1 19.705 0 0 2.1619 0 0 582.2652455060562 0 582.2652455060562 0 19.220449851406517 0 0 0 0.9247425010840047 0 0 0 T[{I|L}P] 2.1619 + + 10 NaN NaN 107771.1 NaN 7872 2773 10645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10648 51.542 NaN 197540 35 0 29879 0.261 + 8923 HPDIIRPIT 9 63 531.3086571634212 1060.6027613936424 2 531.2919921875 MULTI HCD FTMS 0 0 0 10645 17744.869140625 0.25807554391910353 6 -0.15450286865234375 3 Unmodified _HPDIIRPIT_ ENSG00000171903|ENST00000402119|CYP4F11 9.38312468134398 0.279288223203164 2 [Y{I|L}][DN]Y{M(Oxidation (M))|F}P 7 7 23.945 0 0 2.2577 0 0 0 145.17605539599734 145.17605539599734 1.2417572044214609 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}][DN]Y{M(Oxidation (M))|F}P 2.2577 - 64 NaN NaN 110755.2 NaN 7873 2773 10645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10649 51.545 NaN 77926 35 0 5325.6 0.261 + -1 LYPAQTMEKI 10 36 605.312677667999 1208.6108024027978 2 605.3128662109375 MULTI HCD FTMS 0 0 0 10645 22411.068359375 0.27951937194548476 3 -0.06607437133789062 4 Oxidation (M) _LYPAQTM(Oxidation (M))EKI_ REV__PARP8|p.R616K|1|0.15|ENSG00000151883|chr5:50822387-50822387|G/A|missense_variant 2.735195868890462 0.4608258780945842 2 V 1 -1 3.4949 0 0 0.28916 0 0 570.8424301975684 535.6648043268186 1106.507234524387 0 0 0 0 0 0 0 0 0 V 0.28916 - 1 + NaN NaN 94319.1 NaN 7874 2773 10645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10650 51.548 NaN 120740 35 0 10217 0.261 -1 YLHGNPFVC 9 51 553.7593423121855 NaN 0 553.76025390625 PEAK HCD FTMS 0 0 0 10645 19354.060546875 0.6060297436087495 -3 0.0821533203125 5 Carbamidomethyl (C) _YLHGNPFVC(Carbamidomethyl (C))_ ENSG00000139211|ENST00000550413|AMIGO2 9.347437153973935 0.2499504662953367 2 {I|L}{I|L} 2 -1 10.969 0 0 0.99223 0 0 277.087150356422 599.2253512018186 876.3125015582407 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.99223 - 7 + NaN NaN 113710.8 NaN 7875 2773 10645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10651 51.552 NaN 76282 35 0 5990.7 0.261 + -1 CHCCPCCCC 9 46 601.6412911381761 NaN 0 601.778564453125 PEAK HCD FTMS 0 0 0 10645 6643.85595703125 1 0 0 6 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))HC(Carbamidomethyl (C))C(Carbamidomethyl (C))PC(Carbamidomethyl (C))CCC_ REV__ENSG00000197191|ENST00000650725|CYSRT1 0 0.29524684227089293 2 M 1 -1 5.4846 0 0 0.45656 0 0 680.0426397941272 387.16266809635005 1067.2053078904773 0 0 0 0 0 0 0 0 0 M 0.45656 - 3 + NaN NaN 103803.9 NaN 7876 2773 10645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10653 51.557 NaN 1316500 35 0 316300 0.327 + 33441 YGSRLDYFQ 9 69 574.7716788375401 1147.52880474188 2 574.772216796875 MULTI HCD FTMS 0 0 0 10652 681105.625 0.7356103522180687 4 -0.09528732299804688 1 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 20.453626601364224 0.18364154288633264 2 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 8 88.198 0 0 7.6859 0 0 220.08374615279075 0 220.08374615279075 0 67.7524439246897 0 0 0 2.774227503252014 0 2.1861818737241734 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 7.6859 - 703 + NaN NaN 288214.5 NaN 7877 2774 10652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10654 51.561 NaN 423500 35 0 57168 0.262 + 21689 QAAPDLHVL 9 60 482.26661663080546 962.5186803284109 2 482.2666015625 MULTI HCD FTMS 0 0 0 10652 167307.46875 0.18091551545542778 6 -0.16121292114257812 2 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 34.10243960390752 0.09241788333544565 2 [QA]APD{I|L}H[{I|L}V] 9 0 + 26.594 0 0 2.763 2.763 88.084 0 0 0 -4.084397892922947 3.3190074345064637 -4.084397892922947 26.594334303825637 0 0.805462187404089 0 0 0 + + [QA]APD{I|L}H[{I|L}V] 2.763 + + 316 + NaN NaN 138560.7 NaN 7878 2774 10652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10655 51.565 NaN 329560 35 0 26448 0.261 + 26617 SWKLDGQIGLM 11 55 624.326483891174 NaN 0 624.3082885742188 PEAK HCD FTMS 0 0 0 10652 8993.935546875 0.646696013712796 2 -0.043178558349609375 3 Unmodified _SWKLDGQIGLM_ REV__ENSG00000179163|ENST00000374479|FUCA1 8.155526934196011 0.3189852622248163 2 MNEN{I|L}VH 7 -1 27.427 0 0 2.2001 0 0 131.13335671955184 275.10715662174067 406.2405133412925 0 0 0 0 0 0 0 0 0.3807196863200844 MNEN{I|L}VH 2.2001 - 266 + NaN NaN 138616.2 NaN 7879 2774 10652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10656 51.568 NaN 270860 35 0 24635 0.261 + 18594 MVSDEYEQL 9 60 565.2395405618115 1128.464528190423 2 565.23974609375 MULTI HCD FTMS 0 0 0 10652 115047.328125 0.11302640887024938 16 -0.4526519775390625 4 Oxidation (M) _M(Oxidation (M))VSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 56.17704186161178 0.022929533404884107 2 YEQ{I|L} 4 5 49.553 0 0 4.3912 0 0 577.2056482896948 0 577.2056482896948 0 35.74031267727719 0 0 0 1 0 0.7614393726401688 0 + YEQ{I|L} 4.3912 + + 85 NaN NaN 131906.7 NaN 7880 2774 10652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10657 51.571 NaN 61515 35 0 3551.8 0.261 -1 YPEGFEIHSM 10 39 613.2633945636383 1224.5122361940764 2 613.2626953125 MULTI HCD FTMS 0 0 0 10652 15091.7919921875 0.05082160079872877 53 -1.3620147705078125 5 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 3.2813086475875832 0.45793521633868084 2 {I|L} 1 -1 3.9794 0 0 0.32498 0 0 945.5098385884108 162.90117822818596 1108.4110168165969 0 0 0 0 0 0 0 0 0 {I|L} 0.32498 + + 4 + NaN NaN 94427.5 NaN 7881 2774 10652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10659 51.576 NaN 327190 35 0 27483 0.327 -1 KYLDIPKML 9 78 568.8217151693304 1135.6288774054608 2 568.8230590820312 MULTI HCD FTMS 0 0 0 10658 56675.9453125 0.5934622402613206 5 -0.14160537719726562 1 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ ENSG00000072110|ENST00000394419|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814|ACTN1 26.020703789607367 0.13554323117744113 2 KY{I|L}D{I|L}[KP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 + 44.108 0 0 3.884 3.884 89.146 0 0 0 33.13872175346184 8.657424843733637 8.657424843733637 29.99282213420201 0 1.7302046884880937 0 0.3494850021680094 0 KY{I|L}D{I|L}[KP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}[Q{I|L}]{I|L}[KP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}[KP]{I|L}[Q{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3.884;1.2429;0.93518 +;-;- + 111 + NaN NaN 134803.5 NaN 7882 2775 10658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10660 51.581 NaN 265540 35 0 23696 0.261 + 28212 TLCTTLDTII 10 60 547.2949624090371 1092.5753718848741 2 547.785888671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TLCTTLDTII_ ENST00000420685.1_1_21:15219408-15219965:-|nuORF 6.2057823575117 0.44245551207394906 2 VTNW 4 9 35.037 0 0 3.2068 0 0 574.3267889764742 0 574.3267889764742 0 3.7691846597185474 0 0 0 0 0 0 0.8494850021680094 VTNW 3.2068 - 93 + NaN NaN 116863.5 NaN 7883 2775 10658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10661 51.584 NaN 183560 35 0 47399 0.263 + 17744 MDSREAFCFL 10 50 406.8484551571946 1217.5235360717838 3 406.8485412597656 MULTI HCD FTMS 0 0 0 10658 32256.728515625 0.6333407269029372 2 -0.05599212646484375 3 Unmodified _MDSREAFCFL_ ENSG00000172716|ENST00000685675|SLFN11 3.5870582119611467 0.4563168352879256 2 {I|L}{I|L} 2 9 23.583 0 0 1.937 0 0 973.3445259554926 0 973.3445259554926 0 16.620768972555595 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.937 - 34 NaN NaN 120901.7 NaN 7884 2775 10658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10662 51.587 NaN 227830 35 0 13264 0.261 + 11759 KDQFFKNW 8 62 556.780300110808 NaN 0 556.7904663085938 PEAK HCD FTMS 0 0 0 10658 7197.09423828125 0.3005265701582324 1 -0.023571014404296875 4 Unmodified _KDQFFKNW_ REV__ENSG00000131374|ENST00000696125|TBC1D5;REV__nc|ENSG00000131374|Q92609|TBC1D5 4.75600775471527 0.38822285293237185 2 NT 2 -1 10.969 0 0 0.98683 0 0 222.086553977763 671.3527759296281 893.4393299073911 0 0 0 0 0 0 0 0 0 NT 0.98683 - 51 + NaN NaN 118326.1 NaN 7885 2775 10658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10663 51.591 NaN 51019 35 0 9787 0.262 + 30395 VLLVLYQKHFL 11 34 458.2831581315494 1371.8276449948482 3 458.2831115722656 MULTI HCD FTMS 0 0 0 10658 4737.2685546875 0.2575024229618111 1 -0.023571014404296875 5 Unmodified _VLLVLYQKHFL_ ENST00000272298.11_1_2:47387407-47387581:-|nuORF 2.6312355333042263 0.4073809613003177 2 [{I|L}V]{NN|[MP]|[D{I|L}]|[EV]}A 5 8 14.154 0 0 1.0318 0 0 0 857.5284255947107 857.5284255947107 12.102868501927874 0 0 0 0 0.5 1.5228787452803376 0 0 [{I|L}V]{NN|[MP]|[D{I|L}]|[EV]}A 1.0318 - 28 NaN NaN 91658.7 NaN 7886 2775 10658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10665 51.599 NaN 520830 35 0 77530 0.327 + 13086 KYLEHPLLL 9 79 563.3369877757476 1124.6594226182951 2 563.3370971679688 MULTI HCD FTMS 0 0 0 10664 202525.234375 0.9545031914432971 -1 0.023571014404296875 1 Unmodified _KYLEHPLLL_ ENSG00000114999|ENST00000233336|TTL 69.10491478415734 0.009377850133389008 2 KY{I|L}EH[{I|L}P]{I|L}{I|L} 9 0 + 51.565 0 0 4.5849 4.5849 83.461 0 0 0 4.11359110675761 4.11359110675761 4.11359110675761 4.11359110675761 0 2.1989700043360187 0 0.2742275032520141 0 + + KY{I|L}EH[{I|L}P]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YK]H[{I|L}P]{I|L}{I|L};[{I|L}P]{I|L}H{I|L}EYK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}{I|L}EYK{I|L} 4.5849;4.2192;3.2668;0.38326 +;-;-;- + 278 + NaN NaN 164631.6 NaN 7887 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10666 51.604 NaN 305970 35 0 47998 0.261 -1 0 61 560.2614399841591 559.254163517559 1 560.2785034179688 MULTI HCD FTMS 0 0 0 10664 6406.89111328125 0.33810591303528637 -2 0.043178558349609375 2 NaN NaN 2 Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 10.458 0 0 1.8699 0 0 118.06136674197155 0 118.06136674197155 0 3.4678748622465623 0 0 0 0 0 0 0 Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.8699 - 25 + NaN NaN 132361.8 NaN 7888 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10667 51.607 NaN 234730 35 0 18418 0.261 -1 FILDPECLE 9 64 568.273047480339 NaN 0 568.26171875 PEAK HCD FTMS 0 0 0 10664 6065.59033203125 1 0 0 3 Carbamidomethyl (C) _FILDPEC(Carbamidomethyl (C))LE_ ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;nc|ENSG00000164199|Q8WXG9-4|ADGRV1 7.910154910731844 0.25691533546754686 2 EKM 3 -1 14.679 0 0 1.2939 0 0 131.12000072933444 612.2284639947874 743.3484647241219 0 0 0 0 0 0.3252574989159953 0 0 0 EKM 1.2939 - 62 + NaN NaN 126621.1 NaN 7889 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10668 51.611 NaN 223420 35 0 55498 0.261 + 13701 KYPKVWEGF 9 55 577.3056017756292 1152.5966506180582 2 577.3051147460938 MULTI HCD FTMS 0 0 0 10664 84520.671875 0.3251819473418249 -4 0.09896087646484375 4 Unmodified _KYPKVWEGF_ ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF 34.93206674587334 0.08860942999206235 2 KYPKV 5 4 34.157 0 0 2.9635 0 0 0 534.1978853815061 534.1978853815061 23.979400086720375 0 0 0 0 1 0 0 0 + KYPKV 2.9635 + + 36 + NaN NaN 116539.8 NaN 7890 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10669 51.614 NaN 104120 35 0 8123.6 0.261 -1 TENDIRVMF 9 55 570.7714619756794 1139.5283710181586 2 570.7706909179688 MULTI HCD FTMS 0 0 0 10664 24271.12109375 0.22843841449345142 6 -0.17391204833984375 5 Oxidation (M) _TENDIRVM(Oxidation (M))F_ ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1 23.789781309258295 0.1548179064208189 2 DN[DP] 4 -1 21.995 0 0 1.9302 0 0 680.3691273419937 0 680.3691273419937 0 7.3020468848809355 0 0 0 0.7302046884880937 0 0 0 DN[DP] 1.9302 - 63 NaN NaN 101144.8 NaN 7891 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10670 51.617 NaN 171790 35 0 15907 0.261 -1 YPESESIMM 9 57 551.7252927661093 1101.4360325990185 2 551.7257080078125 MULTI HCD FTMS 0 0 0 10664 17641.85546875 0.22039551892399833 -9 0.23044586181640625 6 Oxidation (M) _YPESESIMM(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 34.10243960390752 0.09241788333544565 2 WS{I|L}M{M(Oxidation (M))|F} 5 -1 54.553 0 0 4.9529 0 0 419.1399098126969 0 419.1399098126969 0 47.562893943202624 0 0 0 1.5 0 0.8494850021680094 0 WS{I|L}M{M(Oxidation (M))|F} 4.9529 - 58 NaN NaN 110597.5 NaN 7892 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10671 51.62 NaN 66365 35 0 10554 0.261 -1 CCPLWMSI 8 37 484.7076305710066 967.4007082088132 2 484.7066955566406 MULTI HCD FTMS 0 0 0 10664 14666.259765625 0.4777684835712794 1 -0.032421112060546875 7 Oxidation (M) _CCPLWM(Oxidation (M))SI_ ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant 5.230669730166228 0.5342319408533849 2 S{I|L} 2 -1 22.959 0 0 2.3732 0 0 749.2739124982437 0 749.2739124982437 0 5.969100130080562 0 0 0 0.5 0 0 0 S{I|L} 2.3732 + + 3 NaN NaN 96635.4 NaN 7893 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10672 51.624 NaN 85083 35 0 6004.3 0.261 + 20179 NYKRYFPVI 9 43 600.3324721167219 NaN 0 600.331787109375 PEAK HCD FTMS 0 0 0 10664 35492.24609375 0.9865692810238935 3 -0.08842849731445312 8 Unmodified _NYKRYFPVI_ chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9;ENSG00000267978|ENST00000595065|MAGEA9B 7.910154910731844 0.25691533546754686 2 A 1 9 4.6041 0 0 0.38411 0 0 132.2434712954037 992.3518160455686 1124.5952873409724 0 0 0 0 0 0 0 0 0 A 0.38411 - 2 + NaN NaN 101535.5 NaN 7894 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10673 51.627 NaN 203080 35 0 32195 0.262 -1 0 46 488.1103323424479 2922.6183352550875 6 488.44476318359375 MULTI HCD FTMS 0 0 0 10664 18074.240234375 0.1329054369317775 33 -0.8700408935546875 9 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 128368.7 NaN 7895 2776 10664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10675 51.632 NaN 367740 35 0 40335 0.327 + 22639 QVVEEDPEL 9 77 529.2552559446437 1056.4959589560874 2 528.7714233398438 MULTI HCD FTMS 0 0 0 10674 31513.94140625 0.5999311247034019 4 -0.12184524536132812 1 Unmodified _QVVEEDPEL_ ENSG00000012779|ENST00000374391|ALOX5;ENST00000498461.1_1_10:45938876-45939636:+|nuORF;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5 16.149105407346934 0.22083165093524068 2 GVV{[QG]|[NA]}{I|L}TA{M(Oxidation (M))|F} 9 7 33.51 0 0 3.1718 0 0 166.04760798128115 0 166.04760798128115 0 10.004632150221234 0 0 0 0.2742275032520141 0 0 0 GVV{[QG]|[NA]}{I|L}TA{M(Oxidation (M))|F} 3.1718 - 509 + NaN NaN 150322.9 NaN 7896 2777 10674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10676 51.637 NaN 236360 35 0 32379 0.261 + 29030 TYFDKNYNL 9 63 589.2797975994221 1176.545042265644 2 589.2797241210938 MULTI HCD FTMS 0 0 0 10674 95523.8984375 0.4311826683670799 5 -0.14149093627929688 2 Unmodified _TYFDKNYNL_ ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 24.990960013464015 0.14443998892849796 2 [YT]{M(Oxidation (M))|F} 3 6 34.705 0 0 2.9497 0 0 0 762.3427828424436 762.3427828424436 11.173005843163608 0 0 0 0 0.4247425010840047 2 0 0 + [YT]{M(Oxidation (M))|F} 2.9497 + + 115 + NaN NaN 125858.4 NaN 7897 2777 10674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10677 51.64 NaN 128840 35 0 15205 0.262 + 16859 LYESPTEL 8 48 476.23783462196224 950.4611163107245 2 476.23773193359375 MULTI HCD FTMS 0 0 0 10674 57868.3125 0.957282471738778 1 -0.019687652587890625 3 Unmodified _LYESPTEL_ REV__ENSG00000166448|ENST00000339375|TMEM130;REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130;REV__nc|ENSG00000166448|Q8N3G9|TMEM130 18.13498045792455 0.4603629008820478 2 WA{I|L} 3 -1 27.435 0 0 2.8865 0 0 562.2503529279312 0 562.2503529279312 0 20.445312593723983 0 0 0 0.4247425010840047 0 0 0 WA{I|L} 2.8865 - 71 NaN NaN 107827.7 NaN 7898 2777 10674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10678 51.643 NaN 175720 35 0 11077 0.261 -1 HYINMPVQF 9 57 582.7791852134759 1163.5438174937517 2 582.7794799804688 MULTI HCD FTMS 0 0 0 10674 51299.4765625 0.891208576884286 -5 0.13138198852539062 4 Oxidation (M) _HYINM(Oxidation (M))PVQF_ ENSG00000101639|ENST00000506447|CEP192;ENST00000510237.5_1_18:13103579-13124766:+|nuORF;ENST00000513183.1_1_18:13124610-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192 14.838274106304384 0.23215694253501695 2 Q{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.2319 0 0 870.4053758229538 0 870.4053758229538 0 11.7256009838278 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F} 2.2319 + + 44 NaN NaN 111051.7 NaN 7899 2777 10674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10679 51.647 NaN 111020 35 0 20596 0.264 + 21115 PNTQQEVYVPQ 11 52 434.8821668543799 NaN 0 434.882080078125 PEAK HCD FTMS 0 0 0 10674 65143.78515625 1 0 0 5 Unmodified _PNTQQEVYVPQ_ ENSG00000004534|ENST00000266022|RBM6;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant 1.214830529360525 0.33867401910978034 2 {M(Oxidation (M))|F} 1 11 6.9897 0 0 0.8055 0 0 53.21970372653477 664.4202979048931 717.6400016314279 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.8055 - 3 + NaN NaN 101923.2 NaN 7900 2777 10674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10681 51.652 NaN 1133100 35 0 101000 0.327 + 22301 QPERDWVL 8 82 521.7694012960316 1041.524249658863 2 521.76953125 MULTI HCD FTMS 0 0 0 10680 641577.0625 0.5244688143053656 5 -0.1580047607421875 1 Unmodified _QPERDWVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 48.345845343767074 0.13800640434549966 2 ERDR{M(Oxidation (M))|F}{I|L} 6 4 28.318 0 0 2.7189 0 0 207.10048110175939 0 207.10048110175939 0 14.377362900969082 0 0 0 0 0 0.3252574989159953 0.7396518287104438 ERDR{M(Oxidation (M))|F}{I|L} 2.7189 - 198 NaN NaN 259618.3 NaN 7901 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10682 51.656 NaN 1008600 35 0 86968 0.261 + 9438 HPVKIGDLF 9 101 513.2926941290428 1024.5708353248856 2 513.2930297851562 MULTI HCD FTMS 0 0 0 10680 342593.375 0.5995978320163825 -3 0.07567977905273438 2 Unmodified _HPVKIGDLF_ ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;nc|ENSG00000135250|P78362|SRPK2;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant 60.07390631473393 0.0174780869009295 2 {I|L}{I|L}[SG]R[YG]{I|L}{M(Oxidation (M))|F} 9 6 + 30.643 0 0 2.9908 2.9908 83.213 0 0 0 2.966066234078756 6.789778539070564 2.966066234078756 7.589548426529262 0 1.25 1.154901959985743 0.805462187404089 0 {I|L}{I|L}[SG]R[YG]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}D[KG][VP]H{M(Oxidation (M))|F};{I|L}{I|L}[SG]R{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}KR[YG]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V[KG][YG]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}KR{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}K[VG][YG]{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[VA]|[{I|L}G]}R[YG]{I|L}{M(Oxidation (M))|F};[VP]HN{I|L}{I|L}[VS]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V[KG][VP]H{M(Oxidation (M))|F} 2.9908;2.2501;2.087;1.9359;1.0885;1.032;1.0319;0.94684;0.80759;0.29114 -;-;-;-;-;-;-;-;-;- 714 NaN NaN 241435.4 NaN 7902 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10683 51.66 NaN 161140 35 0 14645 0.261 + 12423 KPNACVSLK 9 48 480.2702539804101 NaN 0 480.2558288574219 PEAK HCD FTMS 0 0 0 10680 5940.328125 0.2741955942780626 4 -0.12180328369140625 3 Unmodified _KPNACVSLK_ REV__ENSG00000115009|ENST00000358813|CCL20;REV__nc|ENSG00000115009|P78556-2|CCL20 6.723162845929126 0.26266733336404485 2 QSV 3 -1 20.758 0 0 2.1656 0 0 131.1217362346908 510.2191866510375 641.3409228857283 0 0 0 0 0 0 0 0.805462187404089 0 QSV 2.1656 - 23 + NaN NaN 104837.7 NaN 7903 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10684 51.663 NaN 404360 35 0 45475 0.261 + 24391 RYIPTAAAF 9 73 505.27681951727675 1008.5390861013535 2 505.276611328125 MULTI HCD FTMS 0 0 0 10680 80808.5390625 0.012651659292139312 42 -1.0931167602539062 4 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 2 AA{M(Oxidation (M))|F} 3 6 31.995 0 0 3.1724 0 0 701.3867054669937 0 701.3867054669937 0 15.796896906561027 0 0 0 0.8807196863200843 0 0 0 + AA{M(Oxidation (M))|F} 3.1724 + + 180 NaN NaN 140703.5 NaN 7904 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10685 51.666 NaN 185440 35 0 20145 0.261 -1 TPMFREYSL 9 48 580.2760784282957 NaN 0 580.2758178710938 PEAK HCD FTMS 0 0 0 10680 103112.4453125 1 0 0 5 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 23.80106514851385 0.1618846617838238 2 SYE 3 -1 16.995 0 0 1.4669 0 0 131.09402987286927 645.2808931940061 776.3749230668755 0 0 0 0 0 0.5 0 0.3807196863200844 0 SYE 1.4669 - 27 + NaN NaN 119844.2 NaN 7905 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10686 51.67 NaN 293210 35 0 18815 0.261 -1 0 74 568.2962462197476 567.2889697531475 1 568.2844848632812 MULTI HCD FTMS 0 0 0 10680 14490.3798828125 0.45757777325488164 -2 0.0521087646484375 6 NaN NaN 2 K{[QV]|[N{I|L}]|[RA]|[KV]} 3 -1 10.942 0 0 1.9288 0 0 194.05720203029438 0 194.05720203029438 0 3.979400086720375 0 0 0 0 0 0 0.3494850021680094 K{[QV]|[N{I|L}]|[RA]|[KV]} 1.9288 - 20 + NaN NaN 126841.9 NaN 7906 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10687 51.673 NaN 182310 35 0 23067 0.264 + 28471 TPMPALSVWMD 11 53 416.5321751574396 NaN 0 416.5546875 PEAK HCD FTMS 0 0 0 10680 6484.146484375 1 0 0 7 Unmodified _TPMPALSVWMD_ REV__ENSG00000162873|ENST00000367155|KLHDC8A 1.214830529360525 0.33867401910978034 2 W 1 -1 2.7642 0 0 0.33262 0 0 429.86154772523236 212.09267603092033 641.9542237561527 0 0 0 0 0 0 0 0 0 W 0.33262 + + 3 + NaN NaN 115843.9 NaN 7907 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10688 51.676 NaN 109920 35 0 11396 0.261 + -1 VLRREELYM 9 46 612.8238256277771 NaN 0 612.8228759765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _VLRREELYM(Oxidation (M))_ REV__ENSG00000178568|ENST00000342788|ERBB4;REV__nc|ENSG00000178568|Q15303-2|ERBB4;REV__nc|ENSG00000178568|Q15303-3|ERBB4;REV__nc|ENSG00000178568|Q15303-4|ERBB4 2.302733041254933 0.2840881193086663 2 Y{I|L} 2 -1 9.464 0 0 0.77343 0 0 166.14705195112248 778.3162935846311 944.4633455357537 0 0 0 0 0 0 0 0 0 Y{I|L} 0.77343 - 6 + NaN NaN 105448.3 NaN 7908 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10689 51.68 NaN 61811 35 0 5107.3 0.261 + 16662 LWHPLWHLR 9 32 629.3542731781405 NaN 0 629.3233032226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LWHPLWHLR_ ENST00000228264.10_1_12:31257084-31257465:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87209.9 NaN 7909 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10690 51.683 NaN 121390 35 0 12942 0.264 -1 0 43 453.07386804465534 NaN 0 453.17315673828125 PEAK HCD FTMS 0 0 0 10680 21063.759765625 1 0 0 10 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98184.8 NaN 7910 2778 10680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10692 51.688 NaN 1033400 35 0 88264 0.327 + 26170 SPNAEIHIL 9 86 497.27255645754065 992.5305599818813 2 497.2730712890625 MULTI HCD FTMS 0 0 0 10691 119798.4296875 0.6571934014421552 1 -0.029605865478515625 1 Unmodified _SPNAEIHIL_ ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF;nc|ENSG00000079616|Q14807-2|KIF22 83.42873516780209 0.004742894019233849 2 SP[YK]GVVP{M(Oxidation (M))|F} 9 7 + 64.563 0 0 6.5049 6.5049 84.935 0 0 0 0.28273777167044045 0.28273777167044045 0.28273777167044045 0.28273777167044045 0 0.5 1.3979400086720375 0 0 SP[YK]GVVP{M(Oxidation (M))|F};[PS]NA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};SPNA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};SPGGA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};[YV]VVGT{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[YV]VVSA{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[PS]GGA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};[YV]VVS[WQ]{I|L};[NP]SA{[QN]|[E{I|L}]|[KN]}H{I|L}{I|L};[YV]VRT{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 6.5049;6.4764;6.3345;5.4068;5.212;5.212;5.0218;5.0001;4.5686;4.5593 -;+;+;-;-;-;-;-;-;- + 1584 + NaN NaN 239483.2 NaN 7911 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10693 51.693 NaN 1116600 35 0 102170 0.261 + 9973 IEHGIITNW 9 99 541.7850249789041 1081.555497024608 2 541.784912109375 MULTI HCD FTMS 0 0 0 10691 517758.84375 0.20321511782792162 -4 0.11199951171875 2 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 54.773552608820026 0.024892918755467567 2 RVTNW 5 6 59.182 0 0 5.472 0 0 407.21727187324376 0 407.21727187324376 0 36.23396636845479 0 0 0 1.4247425010840047 0 0.8494850021680094 0.3252574989159953 RVTNW 5.472 - 939 NaN NaN 255820 NaN 7912 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10694 51.696 NaN 120400 35 0 26247 0.261 + 10519 IPESDPADL 9 46 478.7324114895631 955.4502700459262 2 478.7322692871094 MULTI HCD FTMS 0 0 0 10691 50714.03125 0.5250096729820348 1 -0.029605865478515625 3 Unmodified _IPESDPADL_ ENSG00000170873|ENST00000518547|MTSS1;ENST00000520771.1_1_8:125565235-125568613:-|nuORF;nc|ENSG00000170873|O43312-2|MTSS1;nc|ENSG00000170873|O43312-4|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1;TATDN1-MTSS1|1|fusion 14.838274106304384 0.23215694253501695 2 D{I|L} 2 7 25.969 0 0 2.718 0 0 709.3273379108666 0 709.3273379108666 0 3.293037728310253 0 0 0 0.5 0 0 0 + D{I|L} 2.718 + + 31 NaN NaN 96915.7 NaN 7913 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10695 51.699 NaN 231220 35 0 15191 0.261 + 353 AHALTGGLGDF 11 66 529.7667077556803 1057.5188625781605 2 529.766845703125 MULTI HCD FTMS 0 0 0 10691 30704.58984375 0.2951078853194886 4 -0.12168502807617188 4 Unmodified _AHALTGGLGDF_ REV__ENSG00000008516|ENST00000336577|MMP25;REV__ENST00000570755.1_1_16:3097544-3105874:+|nuORF;REV__MMP25|p.F332Sfs*35|1|0.2|ENSG00000008516|chr16:3057599-3057602|CTTT/-|frameshift_variant 5.296884461304476 0.39569033063702824 2 {I|L}TA{M(Oxidation (M))|F} 4 -1 25.662 0 0 2.4266 0 0 607.3029639959324 0 607.3029639959324 0 16.62076897255559 0 0 0 0 0 0 0 {I|L}TA{M(Oxidation (M))|F} 2.4266 - 158 + NaN NaN 134556.7 NaN 7914 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10696 51.703 NaN 130870 35 0 10098 0.262 -1 FCCCCCCCCC 10 48 441.09041535604246 NaN 0 440.9476013183594 PEAK HCD FTMS 0 0 0 10691 13806.349609375 0.4942004505016251 -5 0.1316070556640625 5 4 Carbamidomethyl (C) _FC(Carbamidomethyl (C))C(Carbamidomethyl (C))CCCCCC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENST00000606389.5_1_2:69691306-69691378:-|nuORF;REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF 0.15932191953741626 0.34004793154798674 2 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.39707 0 0 598.029846493299 132.0450838678344 730.0749303611334 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.39707 + + 1 + NaN NaN 99316.6 NaN 7915 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10697 51.706 NaN 531830 35 0 89772 0.261 + 4167 ETQLPVSFR 9 68 538.7905002069197 1075.5664474806392 2 538.7903442382812 MULTI HCD FTMS 0 0 0 10691 62731.94921875 0.46872269934940175 -3 0.08842849731445312 6 Unmodified _ETQLPVSFR_ ENSG00000144028|ENST00000323853|SNRNP200 22.65808497894818 0.16459551161911185 2 {I|L}Q[DP] 4 7 16.727 0 0 1.5552 0 0 604.3330506010262 0 604.3330506010262 0 1.8052345079578913 0 0 0 0.6549471895720984 0 0 0 {I|L}Q[DP] 1.5552 - 128 NaN NaN 186548.8 NaN 7916 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10698 51.709 NaN 153420 35 0 10974 0.261 + -1 YTWFCPSYF 9 41 635.7646487981235 1269.514744663047 2 635.7660522460938 MULTI HCD FTMS 0 0 0 10691 29266.376953125 1 0 0 7 Carbamidomethyl (C) _YTWFC(Carbamidomethyl (C))PSYF_ REV__ENST00000369095.5_1_1:150254991-150255691:+|nuORF 2.0597508629832335 0.3354026079994024 2 N 1 -1 6.9897 0 0 0.55058 0 0 333.0842159538657 819.3458346002561 1152.4300505541219 0 0 0 0 0 0 0 0 0 N 0.55058 - 2 + NaN NaN 99486 NaN 7917 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10699 51.713 NaN 120810 35 0 16222 0.261 -1 0 53 561.4647119261019 NaN 0 561.43603515625 PEAK HCD FTMS 0 0 0 10691 5704.58056640625 0.32451412520649164 -1 0.036319732666015625 8 NaN NaN 2 {M(Oxidation (M))|F}Y 2 -1 10.969 0 0 0.97858 0 0 132.46414127652014 675.3286837213499 807.79282499787 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 0.97858 - 11 + NaN NaN 101062.3 NaN 7918 2779 10691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10701 51.718 NaN 1684700 35 0 164210 0.327 + 35110 YVDPVNKVL 9 98 523.7976542686852 1045.5807556041702 2 523.7974853515625 MULTI HCD FTMS 0 0 0 10700 950387.3125 0.8429352948278502 -1 0.029605865478515625 1 Unmodified _YVDPVNKVL_ ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 96.36657018975838 0.004359138328518304 2 [YV]DVPNKV{I|L} 9 2 + 90.288 0 0 8.6352 8.6352 90.469 0 0 0 17.953963923997748 12.442190502882156 12.442190502882156 5.255762612236907 0 2.031234684152075 2 0.2614393726401688 0.6549471895720985 [YV]DVPNKV{I|L};[YV]DVPNVK{I|L};[YV]DVPGGKV{I|L};[YV]DVPVNK{I|L};[YV]DVPNK{I|L}V;[YV]VDPNKV{I|L};[YV]DVPGGVK{I|L};YVDPVNKV{I|L};[YV]VDPNVK{I|L};[YV]DVPGGK{I|L}V 8.6352;8.1326;7.7546;7.649;7.4453;7.2444;7.0128;6.9181;6.7417;6.5646 -;-;-;-;-;-;-;+;-;- + 1553 NaN NaN 354556.6 NaN 7919 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10702 51.722 NaN 599850 35 0 140260 0.261 + 33442 YGSRLDYFQ 9 63 574.7716788375401 1147.52880474188 2 574.7723999023438 MULTI HCD FTMS 0 0 0 10700 281658.5 0.30419791113927874 10 -0.2914390563964844 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 20.453626601364224 0.18364154288633264 2 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 9 8 86.068 0 0 7.5003 0 0 220.08405804733144 0 220.08405804733144 0 67.1277502416482 0 0 0 2.774227503252014 0 1.9731975075880328 0 V{M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 7.5003 - 487 + NaN NaN 179826.8 NaN 7920 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10703 51.726 NaN 1236000 35 0 120670 0.261 + 23740 RRCTVYVSM 9 93 557.7795443397043 1113.5445357462086 2 557.7802124023438 MULTI HCD FTMS 0 0 0 10700 522979.96875 0.39553296752695544 -3 0.08561325073242188 3 Unmodified _RRCTVYVSM_ REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF 20.453626601364224 0.18364154288633264 2 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 48.544 0 0 4.3594 0 0 662.3747357768635 0 662.3747357768635 0 27.129843661361406 0 0 0 1.5 0 1.274227503252014 0.7614393726401688 TN{[MS]|[{M(Oxidation (M))|F}A]} 4.3594 - 275 + NaN NaN 270466 NaN 7921 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10704 51.729 NaN 278780 35 0 20599 0.261 + 31882 VYNENLVHMI 10 64 624.3080496613613 1246.6015463895226 2 624.3077392578125 MULTI HCD FTMS 0 0 0 10700 105018.09375 0.5148748686605846 10 -0.2914390563964844 4 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 71.70789743142352 0.01556163018108538 2 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 10 0 + 84.135 0 0 6.7491 6.7491 88.986 0 0 0 10.784634594678266 10.784634594678266 10.784634594678266 9.164539485499247 0 2.7302046884880937 2 0 1 + + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]N{I|L}{I|L}[DN]H{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YV]{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[YQ]VVVH{M(Oxidation (M))|F}{I|L} 6.7491;6.014;4.4311;3.1403;2.6216 +;-;-;-;- + 295 NaN NaN 143068.3 NaN 7922 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10705 51.732 NaN 192540 35 0 44810 0.261 + 15720 LPEWKENIM 9 54 588.29176253997 1174.56897214674 2 588.2921142578125 MULTI HCD FTMS 0 0 0 10700 100479.375 0.9969418206433966 -1 0.029605865478515625 5 Oxidation (M) _LPEWKENIM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 43.981846655682396 0.04706587046877104 2 [{I|L}P]EW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L}{M(Oxidation (M))|F} 9 0 + 65.116 0 0 5.5438 5.5438 87.778 0 0 0 4.638787285696964 40.66569691289537 4.638787285696964 9.208187539523749 0 2.305462187404089 1.6989700043360187 0 0 + + [{I|L}P]EW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L}{M(Oxidation (M))|F};[{I|L}P]EW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GG{I|L}{M(Oxidation (M))|F};[EP]{I|L}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}N{I|L}{M(Oxidation (M))|F};[EP]{I|L}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GG{I|L}{M(Oxidation (M))|F} 5.5438;4.7599;4.1843;3.4003 +;-;-;- + 216 NaN NaN 121347.4 NaN 7923 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10706 51.736 NaN 674870 35 0 60827 0.261 + 33403 YGNTLVEFR 9 78 549.7825931689878 1097.5506334047755 2 549.7827758789062 MULTI HCD FTMS 0 0 0 10700 174757.203125 0.37223477967298474 -4 0.11803436279296875 6 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 53.832793166522166 0.026208976789938845 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 58.873 0 0 5.3641 0 0 563.3091916096568 0 563.3091916096568 0 43.071361454968354 0 0 0 2 0 0.9258337024346173 1.089136830878453 VTN{[DS]|[MA]|[CV]|TT} 5.3641 - 181 + NaN NaN 189843.6 NaN 7924 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10707 51.739 NaN 152950 35 0 12620 0.261 + 21690 QAAPDLHVL 9 56 482.26661663080546 962.5186803284109 2 482.7767028808594 MULTI HCD FTMS 0 0 0 10700 9828.3994140625 0.02222971305528379 13 -0.3768501281738281 7 Unmodified _QAAPDLHVL_ ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 6.723162845929126 0.3000504726104499 2 [H{I|L}]V 3 6 7.4473 0 0 0.77373 0 0 0 610.284066641164 610.284066641164 2.464577609514471 0 0 0 0 0 0 0 0 + [H{I|L}]V 0.77373 + + 47 NaN NaN 111798.2 NaN 7925 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10708 51.742 NaN 152780 35 0 7543.8 0.261 + 26962 SYLKQLPHF 9 61 566.8109883320319 1131.6074237308637 2 566.8104248046875 MULTI HCD FTMS 0 0 0 10700 51841.58203125 0.7926563813328783 3 -0.09207916259765625 8 Unmodified _SYLKQLPHF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 24.020572477871973 0.15282392193088168 2 PH{M(Oxidation (M))|F} 3 6 15.19 0 0 1.3423 0 0 732.4183500998075 0 732.4183500998075 0 0.4845500650402812 0 0 0 0.7742275032520141 0 0 0 + PH{M(Oxidation (M))|F} 1.3423 + + 32 + NaN NaN 114477.1 NaN 7926 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10709 51.746 NaN 433230 35 0 50239 0.261 -1 MCVPDQDTAI 10 78 583.2470716059589 1164.4795902787178 2 583.2473754882812 MULTI HCD FTMS 0 0 0 10700 57996.70703125 0.8351077568411516 -1 0.029605865478515625 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))VPDQDTAI_ nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM 10.150570793230772 0.4161670024087991 2 {I|L}DTA{I|L} 5 -1 31.515 0 0 2.7064 0 0 633.1905384748062 0 633.1905384748062 0 -0.10090614668492393 -0.10090614668492393 0 0 0.3807196863200844 0 0.3807196863200844 0 {I|L}DTA{I|L} 2.7064 - 210 NaN NaN 151486.5 NaN 7927 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10710 51.749 NaN 116670 35 0 6276 0.261 -1 YWMHVQNTF 9 39 621.2741052049596 1240.533657476719 2 621.2747192382812 MULTI HCD FTMS 0 0 0 10700 34315.70703125 0.09445901077110574 44 -1.1388092041015625 10 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 7.910154910731844 0.2910521888787154 2 QN[{M(Oxidation (M))|F}T] 4 -1 14.693 0 0 1.1844 0 0 732.3074818341812 0 732.3074818341812 0 14.69273760456403 0 0 0 0 0 0 0 QN[{M(Oxidation (M))|F}T] 1.1844 + + 6 NaN NaN 103674.1 NaN 7928 2780 10700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10712 51.754 NaN 235020 35 0 31482 0.327 + 13087 KYLEHPLLL 9 59 563.3369877757476 1124.6594226182951 2 563.3370971679688 MULTI HCD FTMS 0 0 0 10711 85803.84375 0.4043942620297338 4 -0.10068130493164062 1 Unmodified _KYLEHPLLL_ ENSG00000114999|ENST00000233336|TTL 36.506200033944 0.08138327636155518 2 KY{I|L}EH[{I|L}P]{I|L}{I|L} 9 0 + 42.857 0 0 3.8107 3.8107 86.467 0 0 0 23.1914468044949 5.845078002212887 5.845078002212887 10.74417185552796 0 2.1307196863200843 0 0 0 + + KY{I|L}EH[{I|L}P]{I|L}{I|L};[{I|L}P]{I|L}{[YC]|[HE]}[YK]{I|L}{I|L};[{I|L}P]{I|L}{[YC]|[HE]}[Y{I|L}]K{I|L};[{M(Oxidation (M))|F}V]{[QN]|[E{I|L}]|[KN]}T[YK]{I|L}{I|L};[{M(Oxidation (M))|F}V]{[QN]|[E{I|L}]|[KN]}T[Y{I|L}]K{I|L} 3.8107;2.8554;1.8755;1.3447;0.3648 +;-;-;-;- + 88 + NaN NaN 121108.8 NaN 7929 2781 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10713 51.758 NaN 110840 35 0 9699.1 0.261 + 7043 FQAPSHVTL 9 52 500.26654047057866 998.5185280079573 2 500.266845703125 MULTI HCD FTMS 0 0 0 10711 48045.5546875 0.6522801530089768 3 -0.08442306518554688 2 Unmodified _FQAPSHVTL_ ENST00000500447.1_1_11:566062-566293:-|nuORF 5.731851221503515 0.3075653528928475 2 T{I|L} 2 7 25.969 0 0 2.6008 0 0 766.3764801363434 0 766.3764801363434 0 10.484550065040281 0 0 0 0.5 0 0 0 + T{I|L} 2.6008 + + 30 NaN NaN 99128.5 NaN 7930 2781 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10714 51.762 NaN 229790 35 0 16140 0.261 + 25522 SFKHYVNG 8 60 476.23783462196224 950.4611163107245 2 476.75244140625 MULTI HCD FTMS 0 0 0 10711 4681.5302734375 0.18092290215629406 3 -0.08442306518554688 3 Unmodified _SFKHYVNG_ REV__ENSG00000185823|ENST00000329468|NPAP1;REV__NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant 5.760428011301431 0.5334459684533844 2 A{I|L} 2 -1 17.959 0 0 1.8895 0 0 748.3296375959 0 748.3296375959 0 1.7486502786740452 0 0 0 0 0 0 0 A{I|L} 1.8895 - 33 NaN NaN 123798.7 NaN 7931 2781 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10715 51.765 NaN 249660 35 0 37611 0.261 + 10608 IPNPQERTLTL 11 52 641.3617478429991 1280.708942752798 2 641.3606567382812 MULTI HCD FTMS 0 0 0 10711 107112.9609375 0.11991883052704093 -6 0.17783737182617188 4 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 41.34703777101937 0.12827471393888273 2 {I|L}PNPQE 6 5 64.641 0 0 5.0473 0 0 0 599.3515719049436 599.3515719049436 49.156687756324686 0 0 0 0 0.8494850021680094 0 1.1989700043360187 0 + {I|L}PNPQE 5.0473 + + 95 + NaN NaN 127278.9 NaN 7932 2781 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10716 51.769 NaN 184410 35 0 21629 0.264 + -1 FYLCMRPSMI 10 48 439.87530430957213 1316.6040835289164 3 440.2101135253906 MULTI HCD FTMS 0 0 0 10711 22453.41796875 0.8672663068041269 1 -0.01964569091796875 5 Carbamidomethyl (C) _FYLC(Carbamidomethyl (C))MRPSMI_ REV__ENSG00000182854|ENST00000332238|OR4F15 5.40270961882225 0.4467063037482923 2 YE 2 -1 25.217 0 0 1.9153 0 0 1006.4706778683684 0 1006.4706778683684 0 10.612431371158735 0 0 0 0.4247425010840047 0 0 0 YE 1.9153 - 12 NaN NaN 123879.3 NaN 7933 2781 10711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10718 51.774 NaN 1149000 35 0 141610 0.327 + 32384 VYVVGTAHF 9 84 496.7632783339475 991.512003734695 2 496.7637634277344 MULTI HCD FTMS 0 0 0 10717 414558.21875 0.9226180060507007 2 -0.06477737426757812 1 Unmodified _VYVVGTAHF_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 146.00731375242447 1.3047045798573153E-05 2 VYVVGTAH{M(Oxidation (M))|F} 9 0 + 117.98 0 0 11.899 11.899 97.426 0 0 0 101.77977691042015 16.478174818886373 16.478174818886373 19.423487412610356 0 2.9634679910804405 1.6989700043360187 1.2302046884880937 0 + + VYVVGTAH{M(Oxidation (M))|F};VYVV[QT]H{M(Oxidation (M))|F};[YV]VVGTAH{M(Oxidation (M))|F};VYVR[DP]P{M(Oxidation (M))|F};VY[DP]RVP{M(Oxidation (M))|F};[YV]VGVTAH{M(Oxidation (M))|F};[YV][DP]RVP{M(Oxidation (M))|F};[YV]VV[QT]H{M(Oxidation (M))|F};[YV]VR[DP]P{M(Oxidation (M))|F};VY{[QS]|[NT]}[{I|L}V]H{M(Oxidation (M))|F} 11.899;9.9398;8.8379;8.6085;8.0856;7.3251;7.021;6.8332;6.4981;5.7465 +;-;+;-;-;-;-;-;-;- + 1663 + NaN NaN 270429.7 NaN 7934 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10719 51.778 NaN 956100 35 0 83080 0.261 + 33404 YGNTLVEFR 9 89 549.7825931689878 1097.5506334047755 2 549.7828369140625 MULTI HCD FTMS 0 0 0 10717 446675.90625 0.951424631288425 -2 0.055877685546875 2 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 58.678817012210395 0.019429721296335044 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 59.666 0 0 5.4363 0 0 563.3054074299693 0 563.3054074299693 0 39.61151983220164 0 0 0 2 0 1.0228787452803376 1.110924374808178 VTN{[DS]|[MA]|[CV]|TT} 5.4363 - 315 + NaN NaN 244960.4 NaN 7935 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10720 51.782 NaN 862420 35 0 128590 0.261 + 30019 VFPEKGYSF 9 62 537.2689140649122 1072.5232751966244 2 537.2694091796875 MULTI HCD FTMS 0 0 0 10717 187747.28125 0.30494017340424345 -14 0.3780860900878906 3 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 21.536976647645854 0.1742816388551942 2 V{M(Oxidation (M))|F} 2 7 21.198 0 0 1.9765 0 0 0 823.3626635558816 823.3626635558816 0.5189512869135804 0 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 1.9765 + + 64 + NaN NaN 221717.8 NaN 7936 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10721 51.785 NaN 390830 35 0 70657 0.261 -1 YQRMVIAEQ 9 68 577.2857831821948 1152.5570134311895 2 577.3055419921875 MULTI HCD FTMS 0 0 0 10717 63362.73046875 0.5408924733362802 -3 0.08548355102539062 4 Oxidation (M) _YQRM(Oxidation (M))VIAEQ_ ENSG00000276231|ENST00000619866|PIK3R6 7.289230182591677 0.29575926068275815 2 QYP 3 -1 26.198 0 0 2.273 0 0 0 761.3615816705686 761.3615816705686 14.872118693881546 0 0 0 0 0 0 0 0 QYP 2.273 - 159 + NaN NaN 139811.1 NaN 7937 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10722 51.788 NaN 406000 35 0 33156 0.261 + 34968 YSQDVLAHPV 10 81 564.7876740102195 1127.5607950872388 2 564.7694091796875 MULTI HCD FTMS 0 0 0 10717 7462.765625 0.2116956110736887 6 -0.17313766479492188 5 Unmodified _YSQDVLAHPV_ ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2 15.847184025352803 0.36288280428275715 2 {[{M(Oxidation (M))|F}C]|[YS]}NT[{I|L}V]E[R{M(Oxidation (M))|F}] 9 6 + 29.535 0 0 2.6194 2.6194 80.192 0 0 0 -2.7186484112676936 0.8014992061483781 -2.7186484112676936 0.5102999566398125 0 0 0 0.9896518287104438 0.3494850021680094 {[{M(Oxidation (M))|F}C]|[YS]}NT[{I|L}V]E[R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}NS{I|L}{I|L}E[R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}NEV[{I|L}T][R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}GGT[{I|L}V]E[R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}GGS{I|L}{I|L}E[R{M(Oxidation (M))|F}];{[{M(Oxidation (M))|F}C]|[YS]}GGEV[{I|L}T][R{M(Oxidation (M))|F}];[HA]{[NV]|[RG]}[RV]SN[MT];{[CT]|[{M(Oxidation (M))|F}G]}KK{M(Oxidation (M))|F}RN[MT];{[YD]|[{M(Oxidation (M))|F}M]}NTV[{I|L}T][R{M(Oxidation (M))|F}];{[QN]|[E{I|L}]|[KN]}[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}N{[{M(Oxidation (M))|F}C]|[YS]} 2.6194;2.5741;2.3639;1.8028;1.7575;1.5472;0.92506;0.34972;0.21615;0.051519 -;-;-;-;-;-;-;-;-;- 331 + NaN NaN 149827.7 NaN 7938 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10723 51.792 NaN 286950 35 0 31157 0.261 -1 IPHMDIEAL 9 68 527.7655620720968 NaN 0 527.7655029296875 PEAK HCD FTMS 0 0 0 10717 124866.6328125 0.3419493264918346 -8 0.21709060668945312 6 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 34.10243960390752 0.09718911733815057 2 {I|L}AE{[YD]|[{M(Oxidation (M))|F}M]}E 6 -1 30.679 0 0 2.9121 0 0 131.09604222152922 199.10885034732658 330.2048925688558 0 0 0 0 0 0.9247425010840047 0 1.079689690656103 0 {I|L}AE{[YD]|[{M(Oxidation (M))|F}M]}E 2.9121 - 129 + NaN NaN 130832.9 NaN 7939 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10724 51.795 NaN 214570 35 0 14956 0.261 -1 KYAMMFAEL 9 67 568.2615780253091 1134.508603117418 2 568.2611083984375 MULTI HCD FTMS 0 0 0 10717 58314.94140625 0.22005267187121727 25 -0.6386566162109375 7 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 10.073929032068715 0.27331982688540024 2 AE{I|L} 3 -1 28.188 0 0 2.4846 0 0 803.3336659162125 0 803.3336659162125 0 10.395906230238122 0 0 0 0.3494850021680094 0 0 0 AE{I|L} 2.4846 + + 103 NaN NaN 126496.9 NaN 7940 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10725 51.798 NaN 224330 35 0 32478 0.262 + 19544 NSLGVVPYL 9 48 481.27149825037884 960.5284435675577 2 481.27130126953125 MULTI HCD FTMS 0 0 0 10717 94817.1015625 0.901730352616221 -4 0.12180328369140625 8 Unmodified _NSLGVVPYL_ ENSG00000054598|ENST00000645831|FOXC1 13.90604991867851 0.24021115267848145 2 Y{I|L} 2 7 25.969 0 0 2.7036 0 0 666.3696909024679 0 666.3696909024679 0 21.13621890751531 0 0 0 0.5 0 0 0 + Y{I|L} 2.7036 + + 18 NaN NaN 114463.2 NaN 7941 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10726 51.802 NaN 113140 35 0 9898.7 0.261 -1 LPAAGVGDMV 10 47 473.2394036775673 944.4642544219346 2 473.23974609375 MULTI HCD FTMS 0 0 0 10717 39385.55078125 0.668208768314818 -2 0.055877685546875 9 Oxidation (M) _LPAAGVGDM(Oxidation (M))V_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 30.636539890814138 0.2266618088935899 2 QV[DG]{M(Oxidation (M))|F}V 6 -1 28.633 0 0 3.0317 0 0 281.17317397285314 0 281.17317397285314 0 16.95046257204389 0 0 0 0.9247425010840047 0 0 0 QV[DG]{M(Oxidation (M))|F}V 3.0317 - 59 NaN NaN 101897.6 NaN 7942 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10727 51.805 NaN 105400 35 0 13429 0.261 -1 MPQSMPEYAL 10 50 599.7593705461765 1197.5041881591528 2 600.3005981445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 2 YA{I|L} 3 -1 35.005 0 0 2.9232 0 0 832.3078480451187 0 832.3078480451187 0 17.04628427264403 0 0 0 0.8807196863200843 0 0 0 YA{I|L} 2.9232 + + 37 NaN NaN 94053.1 NaN 7943 2782 10717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10729 51.813 NaN 918910 35 0 108560 0.264 + 9439 HPVKIGDLF 9 101 513.2926941290428 1024.5708353248856 2 513.292724609375 MULTI HCD FTMS 0 0 0 10728 421008.71875 0.7368382853944415 2 -0.044834136962890625 1 Unmodified _HPVKIGDLF_ ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;nc|ENSG00000135250|P78362|SRPK2;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant 60.07390631473393 0.0174780869009295 2 PVK{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 7 4 37.913 0 0 3.7004 0 0 137.06021706916096 0 137.06021706916096 0 10.551549914546676 0 0 0 1.1694451763165201 0 0.5283773187068795 0 PVK{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 3.7004 - 817 + NaN NaN 231608.1 NaN 7944 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10730 51.817 NaN 1453400 35 0 335240 0.261 -1 TSRPQPSSSAM 11 100 582.7694049577705 1163.5242569823408 2 582.7684936523438 MULTI HCD FTMS 0 0 0 10728 516495.6875 0.3633398545115984 -3 0.09207916259765625 2 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 19.361941925380144 0.2883811769592959 2 DVST{I|L}{M(Oxidation (M))|F}GA{M(Oxidation (M))|F} 9 -1 76.68 0 0 6.5904 0 0 208.08433730293126 0 208.08433730293126 0 57.21639407645036 0 0 0 2 0 1.3851518780601921 0 DVST{I|L}{M(Oxidation (M))|F}GA{M(Oxidation (M))|F} 6.5904 - 2374 NaN NaN 311793.1 NaN 7945 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10731 51.82 NaN 277300 35 0 27414 0.262 + 8367 GYLADPAKF 9 55 491.25546388540874 980.4963748376175 2 491.2557373046875 MULTI HCD FTMS 0 0 0 10728 121022.5625 0.7634612332765247 -2 0.05584716796875 3 Unmodified _GYLADPAKF_ ENSG00000137547|ENST00000260102|MRPL15 60.07390631473393 0.0174780869009295 2 [YG]{I|L}AD[PA]K{M(Oxidation (M))|F} 9 0 + 86.315 0 0 8.8032 8.8032 90.877 0 0 0 18.69022757058852 71.71069641939789 18.69022757058852 5.796896906561031 0 2.805462187404089 2 0.23965182871044374 0 + + [YG]{I|L}AD[PA]K{M(Oxidation (M))|F};[YG]{I|L}ADK[PA]{M(Oxidation (M))|F};[YG]{I|L}KDA[PA]{M(Oxidation (M))|F};[YG]{I|L}A[TA]A[PA]{M(Oxidation (M))|F};[YG]{I|L}WK{I|L}{[DS]|[MA]|[CV]|TT};[PS]{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}E]K{M(Oxidation (M))|F} 8.8032;8.212;7.9675;6.0085;5.8537;0.86462 +;-;-;-;-;- + 141 NaN NaN 136944.5 NaN 7946 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10732 51.823 NaN 284730 35 0 48976 0.261 -1 RFDEAYIYM 9 48 612.2738849924816 1222.5332170517631 2 612.2740478515625 MULTI HCD FTMS 0 0 0 10728 131615.875 1 0 0 4 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 12.240655878213236 0.2545997876781172 2 Y{I|L}Y{M(Oxidation (M))|F} 4 -1 41.938 0 0 3.4304 0 0 618.275194236525 0 618.275194236525 0 41.938200260161125 0 0 0 1 0 0 0 Y{I|L}Y{M(Oxidation (M))|F} 3.4304 + + 11 NaN NaN 139284.5 NaN 7947 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10733 51.827 NaN 430600 35 0 64257 0.262 -1 VMAPRTVLL 9 66 508.30225275526703 1014.5899525773341 2 508.302734375 MULTI HCD FTMS 0 0 0 10728 127619.671875 0.31044948637621755 -7 0.210113525390625 5 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 18.1463463914782 0.20357593197100715 2 AD{I|L} 3 -1 33.188 0 0 3.271 0 0 697.4474382246378 0 697.4474382246378 0 11.989700043360187 0 0 0 1 0 0 0 AD{I|L} 3.271 - 42 NaN NaN 151935.4 NaN 7948 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10734 51.83 NaN 321560 35 0 40808 0.261 + 24392 RYIPTAAAF 9 64 505.27681951727675 1008.5390861013535 2 505.27679443359375 MULTI HCD FTMS 0 0 0 10728 50815.41796875 0.007955834400508581 47 -1.1708335876464844 6 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 13.90604991867851 0.24021115267848145 2 A{M(Oxidation (M))|F} 2 7 30.217 0 0 2.9961 0 0 772.422632451948 0 772.422632451948 0 15.295000083553202 0 0 0 0.9247425010840047 0 0 0 + A{M(Oxidation (M))|F} 2.9961 + + 62 NaN NaN 137924 NaN 7949 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10735 51.833 NaN 288760 35 0 45525 0.261 + 24990 RYVFQSENTF 10 49 645.8094573676784 1289.6043618021567 2 645.8096923828125 MULTI HCD FTMS 0 0 0 10728 64326.4765625 0.4105240952508115 -3 0.09207916259765625 7 Unmodified _RYVFQSENTF_ ENSG00000107882|ENST00000369902|SUFU;nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU 70.92866715596459 0.016484948974345597 2 {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 7 3 69.501 0 0 5.3893 0 0 418.23262221504064 0 418.23262221504064 0 66.0057918858201 0 0 0 2.079689690656103 0 0.4247425010840047 0 + {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 5.3893 + + 197 NaN NaN 127467.5 NaN 7950 2783 10728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10737 51.838 NaN 3472200 35 0 316060 0.327 + 9974 IEHGIITNW 9 123 541.7850249789041 1081.555497024608 2 541.7852783203125 MULTI HCD FTMS 0 0 0 10736 2364847 0.9281785672058006 1 -0.01625823974609375 1 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 78.14939416004806 0.006451203201226903 2 G{I|L}VTNW 6 4 65.251 0 0 6.0331 0 0 393.20113850246935 0 393.20113850246935 0 30.400092673809823 0 0 0 2.0138793319624577 0 0.8494850021680094 0.3252574989159953 G{I|L}VTNW 6.0331 - 2705 NaN NaN 618245.7 NaN 7951 2784 10736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10738 51.843 NaN 398920 35 0 85285 0.261 + 33443 YGSRLDYFQ 9 53 574.7716788375401 1147.52880474188 2 574.7724609375 MULTI HCD FTMS 0 0 0 10736 186829.21875 0.20178002113741772 14 -0.3742332458496094 2 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 20.453626601364224 0.18364154288633264 2 {M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 8 8 72.115 0 0 6.2844 0 0 319.1644764630875 0 319.1644764630875 0 60.8783628755652 0 0 0 2.8494850021680094 0 0.8494850021680094 0 {M(Oxidation (M))|F}STSVS{[DS]|[MA]|[CV]|TT} 6.2844 - 292 NaN NaN 142697 NaN 7952 2784 10736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10739 51.846 NaN 496910 35 0 79491 0.261 -1 CKHICWVL 8 77 529.7667077556803 1057.5188625781605 2 529.751220703125 MULTI HCD FTMS 0 0 0 10736 11135.1826171875 0.10702244229695913 9 -0.256195068359375 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))KHICWVL_ ENSG00000163012|ENST00000295131|ZSWIM2;ZSWIM2|p.I113Dfs*13|1|0.42|ENSG00000163012|chr2:186839116-186839117|-/C|frameshift_variant 10.183394434864962 0.5188676124868831 2 [Y{M(Oxidation (M))|F}]D[PA]NGKT 9 -1 17.611 0 0 1.6653 0 0 0 61.03208196540894 61.03208196540894 1.5258154238346577 0 0 0 0 0 0 0 0.3252574989159953 [Y{M(Oxidation (M))|F}]D[PA]NGKT 1.6653 - 392 NaN NaN 156142.3 NaN 7953 2784 10736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10740 51.85 NaN 179770 35 0 17241 0.261 -1 0 49 452.67215141125473 2258.3243747232736 5 452.8733825683594 MULTI HCD FTMS 0 0 0 10736 25701.611328125 0.5495578805394604 -4 0.12065505981445312 4 NaN NaN 2 VQ 2 -1 20.969 0 0 0.92852 0 0 0 2028.1395791791629 2028.1395791791629 12.016675202793719 0 0 0 0 0 0 0 0 VQ 0.92852 - 12 + NaN NaN 120406.9 NaN 7954 2784 10736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10742 51.855 NaN 1990000 35 0 200340 0.327 + 23741 RRCTVYVSM 9 105 557.7795443397043 1113.5445357462086 2 557.7800903320312 MULTI HCD FTMS 0 0 0 10741 1120677 0.8475749090518219 2 -0.06250762939453125 1 Unmodified _RRCTVYVSM_ REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF 20.453626601364224 0.18364154288633264 2 {I|L}VTNA{M(Oxidation (M))|F} 6 -1 51.119 0 0 4.5907 0 0 450.22244671074543 0 450.22244671074543 0 29.392653074926045 0 0 0 1.579689690656103 0 0.7302046884880937 0.3494850021680094 {I|L}VTNA{M(Oxidation (M))|F} 4.5907 - 601 NaN NaN 382271.4 NaN 7955 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10743 51.859 NaN 840120 35 0 90019 0.261 + 35111 YVDPVNKVL 9 74 523.7976542686852 1045.5807556041702 2 523.7977294921875 MULTI HCD FTMS 0 0 0 10741 508449.1875 0.45096326532693837 4 -0.12166595458984375 2 Unmodified _YVDPVNKVL_ ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 79.59630418116434 0.005983006570063981 2 [YV]DVPNKV{I|L} 9 2 + 77.678 0 0 7.4291 7.4291 88.36 0 0 0 14.247629110061816 13.296896906561031 13.296896906561031 4.648167490521175 0 1.9308845489566888 2 0.25 0.3807196863200844 [YV]DVPNKV{I|L};[YV]DVPNVK{I|L};[YV]DVPVNK{I|L};[YV]DVPGGKV{I|L};[YV]DVPNK{I|L}V;[YV]DVPGGVK{I|L};YVDVPNKV{I|L};[YV]DVPVGGK{I|L};[YV]DVPGGK{I|L}V;YVDVPGGKV{I|L} 7.4291;6.9846;6.7889;6.5485;6.1574;6.1039;6.0665;5.9082;5.2767;5.1858 -;-;-;-;-;-;-;-;-;- 537 NaN NaN 218108.1 NaN 7956 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10744 51.863 NaN 415000 35 0 83424 0.261 + 33444 YGSRLDYFQ 9 57 574.7716788375401 1147.52880474188 2 574.7723388671875 MULTI HCD FTMS 0 0 0 10741 178481.15625 0.19276391413351 15 -0.41049957275390625 3 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 9 8 68.026 0 0 5.928 0 0 220.08362452505304 0 220.08362452505304 0 52.567978389287404 0 0 0 0.7742275032520141 0 1.5669015600442577 0 SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 5.928 - 271 + NaN NaN 143663.7 NaN 7957 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10745 51.866 NaN 283020 35 0 27967 0.261 + -1 EELQKPHCL 9 63 577.2857831821948 1152.5570134311895 2 577.2855834960938 MULTI HCD FTMS 0 0 0 10741 117144.78125 1 0 0 4 Carbamidomethyl (C) _EELQKPHC(Carbamidomethyl (C))L_ REV__ENSG00000169251|ENST00000351193|NMD3;REV__ENST00000439704.1_1_7:63369621-63370485:-|nuORF 10.073929032068715 0.27331982688540024 2 Q{M(Oxidation (M))|F}NT 4 -1 30.675 0 0 2.6615 0 0 0 659.3543795221311 659.3543795221311 20.21775040875461 0 0 0 0 0 0 0 0.3252574989159953 Q{M(Oxidation (M))|F}NT 2.6615 - 92 + NaN NaN 126720.6 NaN 7958 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10746 51.869 NaN 175890 35 0 15932 0.261 + 31883 VYNENLVHMI 10 52 624.3080496613613 1246.6015463895226 2 624.8098754882812 MULTI HCD FTMS 0 0 0 10741 44109.6171875 0.32293482426287645 13 -0.3579750061035156 5 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 53.40400417844725 0.06540992187319636 2 [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L} 10 0 + 61.616 0 0 4.9427 4.9427 85.156 0 0 0 33.19984993812689 8.819459175083608 8.819459175083608 7.034021960761265 0 1.7971062485323515 2 0 0 + + [YV]NE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]NN{[QN]|[E{I|L}]|[KN]}VH{M(Oxidation (M))|F}{I|L};[YV]GGE{[QV]|[N{I|L}]|[RA]|[KV]}VH{M(Oxidation (M))|F}{I|L};[YV]NGG{[QN]|[E{I|L}]|[KN]}VH{M(Oxidation (M))|F}{I|L};[YV]GGN{[QN]|[E{I|L}]|[KN]}VH{M(Oxidation (M))|F}{I|L} 4.9427;4.3785;4.2076;3.6433;3.6433 +;-;-;-;- + 153 + NaN NaN 114461.1 NaN 7959 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10747 51.873 NaN 179900 35 0 19498 0.261 + 34425 YPESESIMM 9 43 551.7252927661093 1101.4360325990185 2 551.7257080078125 MULTI HCD FTMS 0 0 0 10741 80046.34375 1 0 0 6 Oxidation (M) _YPESESIMM(Oxidation (M))_ ENSG00000162654|ENST00000355754|GBP4 42.09456458481378 0.05572955244001856 2 S{I|L}M{M(Oxidation (M))|F} 4 5 54.412 0 0 4.9401 0 0 605.2336292951187 0 605.2336292951187 0 47.422750325201406 0 0 0 2 0 0.8494850021680094 0 + S{I|L}M{M(Oxidation (M))|F} 4.9401 + + 35 NaN NaN 111913.8 NaN 7960 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10748 51.876 NaN 120250 35 0 12592 0.261 + 34176 YPDGNEGAIRF 11 51 619.7937047396514 1237.5728565461027 2 619.7930297851562 MULTI HCD FTMS 0 0 0 10741 59714.05859375 0.9280891166687774 -4 0.10068130493164062 7 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 23.80106514851385 0.24970295077337615 2 YPD[NG]EGA{I|L}[R{M(Oxidation (M))|F}] 11 0 + 73.219 0 0 5.9163 5.9163 85.333 0 0 0 69.23957328166549 7.367585652254192 7.367585652254192 3.5654732351381284 0 0.4247425010840047 2 0 0 + + YPD[NG]EGA{I|L}[R{M(Oxidation (M))|F}];YPD[NG]EQ{I|L}[R{M(Oxidation (M))|F}] 5.9163;5.6282 +;- + 112 + NaN NaN 117885.5 NaN 7961 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10749 51.879 NaN 88804 35 0 13780 0.264 -1 KDSPVFCRFF 10 32 434.8821668543799 NaN 0 434.88232421875 PEAK HCD FTMS 0 0 0 10741 37649.5078125 0.577944737509436 8 -0.23993682861328125 8 Carbamidomethyl (C) _KDSPVFC(Carbamidomethyl (C))RFF_ ENSG00000115548|ENST00000312912|KDM3A 2.0860074813731053 0.33839895573887124 2 {I|L} 1 -1 2.7642 0 0 0.31855 0 0 338.49375157809726 413.1445406549438 751.638292233041 0 0 0 0 0 0 0 0 0 {I|L} 0.31855 - 1 + NaN NaN 93247.3 NaN 7962 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10750 51.883 NaN 66970 35 0 4362.1 0.261 -1 TPMFREYSL 9 46 580.2760797331745 1158.5376065331488 2 580.2752685546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 4.897010918128616 0.31389406404703984 2 TP{M(Oxidation (M))|F} 3 -1 20.177 0 0 1.7416 0 0 0 810.3753756158811 810.3753756158811 19.463950151760653 0 0 0 0 0 0 0 0 TP{M(Oxidation (M))|F} 1.7416 + + 11 + NaN NaN 100851.7 NaN 7963 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10751 51.886 NaN 193340 35 0 22709 0.264 + 25700 SITSKVQELQN 11 70 416.2278010053873 NaN 0 416.24395751953125 PEAK HCD FTMS 0 0 0 10741 13969.740234375 0.5760966323932799 -3 0.08103561401367188 10 Unmodified _SITSKVQELQN_ ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1 2.498486711656943 0.3350326561941647 2 {I|L} 1 10 5.4846 0 0 0.66044 0 0 319.1860574777683 395.1582430475219 714.3443005252902 0 0 0 0 0 0 0 0 0 + {I|L} 0.66044 + + 4 + NaN NaN 118774.9 NaN 7964 2785 10741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10753 51.891 NaN 776490 35 0 68536 0.327 + 33405 YGNTLVEFR 9 86 549.7825931689878 1097.5506334047755 2 549.7825317382812 MULTI HCD FTMS 0 0 0 10752 331767.5 0.7066684523259588 2 -0.05584716796875 1 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 41.8396318013385 0.056899836730939755 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 48.015 0 0 4.3748 0 0 563.3070303850822 0 563.3070303850822 0 4.626232679752405 0 0 0 1.5 0 0.8494850021680094 0.3807196863200844 VTN{[DS]|[MA]|[CV]|TT} 4.3748 - 218 NaN NaN 202118.9 NaN 7965 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10754 51.895 NaN 161760 35 0 33108 0.261 -1 LPEWKENIM 9 52 588.29176253997 1174.56897214674 2 588.2918701171875 MULTI HCD FTMS 0 0 0 10752 81953.53125 0.8131310794133672 5 -0.14449310302734375 2 Oxidation (M) _LPEWKENIM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 28.494509381512117 0.11816142465008336 2 {I|L}PEW{[SA]|[TG]}{[NV]|[RG]}{I|L}{M(Oxidation (M))|F} 10 -1 + 48.262 0 0 4.1089 4.1089 90.246 0 0 0 22.29241848341495 3.268696479293496 3.268696479293496 48.26151861349551 0 1.6549471895720984 0 0.3807196863200844 0 {I|L}PEW{[SA]|[TG]}{[NV]|[RG]}{I|L}{M(Oxidation (M))|F} 4.1089 - 73 + NaN NaN 109010.6 NaN 7966 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10755 51.899 NaN 176260 35 0 29143 0.262 + 16059 LPSLSAHEL 9 51 483.7664976137586 965.5184422943172 2 483.7664489746094 MULTI HCD FTMS 0 0 0 10752 58227.859375 0.5642706027998948 -4 0.11729049682617188 3 Unmodified _LPSLSAHEL_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8 56.17704186161178 0.022929533404884107 2 {I|L}PS{I|L}{M(Oxidation (M))|F} 5 5 64.112 0 0 6.6402 0 0 0 405.18222986392817 405.18222986392817 50.924778212679485 0 0 0 0 1.305462187404089 1.3979400086720375 0.8494850021680094 0 {I|L}PS{I|L}{M(Oxidation (M))|F} 6.6402 - 184 + NaN NaN 112639.7 NaN 7967 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10756 51.902 NaN 142330 35 0 28642 0.261 -1 MPQSMPEYAL 10 48 599.7593705461765 1197.5041881591528 2 599.7596435546875 MULTI HCD FTMS 0 0 0 10752 48970.11328125 0.5340059366039803 -6 0.17316818237304688 4 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 2 YA{I|L} 3 -1 32.307 0 0 2.6979 0 0 832.30668837715 0 832.30668837715 0 23.723637474483468 0 0 0 0.8494850021680094 0 0 0 YA{I|L} 2.6979 + + 59 NaN NaN 111876.4 NaN 7968 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10757 51.906 NaN 196330 35 0 13229 0.262 + 32729 WPVGGDSRF 9 61 510.74864528041394 1019.4827376276279 2 510.7489013671875 MULTI HCD FTMS 0 0 0 10752 38662.9140625 0.35789617332611495 -6 0.17316818237304688 5 Unmodified _WPVGGDSRF_ ENSG00000141738|ENST00000309156|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 24.990960013464015 0.14443998892849796 2 WPVG[DG]A[YR] 9 2 + 54.376 0 0 5.3337 5.3337 83.544 0 0 0 39.7717530379002 3.748162098248997 3.748162098248997 1.706962271689747 0 0.805462187404089 1.5228787452803376 0 0 WPVG[DG]A[YR];WPV[DN]A[YR];WPV{[ET]|[MV]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};WPD{[NV]|[RG]}A[YR] 5.3337;5.1662;4.0295;3.9207 -;-;-;- 208 + NaN NaN 113064.7 NaN 7969 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10758 51.909 NaN 147340 35 0 13391 0.261 + 29448 TYTSNLVRL 9 63 533.7992445581756 1065.583936183151 2 533.79931640625 MULTI HCD FTMS 0 0 0 10752 40329.8671875 0.9534121658965238 -1 0.0362548828125 6 Unmodified _TYTSNLVRL_ ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 19.361941925380144 0.1930734562688509 2 [YT]T[WK]V 6 5 36.413 0 0 3.4172 0 0 0 284.1721285455688 284.1721285455688 8.22559982972642 0 0 0 0 0.6747425010840047 2 0 0 [YT]T[WK]V 3.4172 - 42 + NaN NaN 106302.2 NaN 7970 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10759 51.912 NaN 71671 35 0 7249.2 0.261 + 15432 LPDKVAPTV 9 49 470.2789214939194 NaN 0 470.27886962890625 PEAK HCD FTMS 0 0 0 10752 32359.96875 1 0 0 7 Unmodified _LPDKVAPTV_ REV__ENSG00000138785|ENST00000340139|INTS12;REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant 10.799506525563784 0.2429139407627568 2 PD 2 -1 11.198 0 0 1.1931 0 0 113.08415944450765 610.3547137569553 723.438873201463 0 0 0 0 0 0.5 0 0 0 PD 1.1931 + + 7 + NaN NaN 86734.4 NaN 7971 2786 10752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10761 51.917 NaN 1386600 35 0 206230 0.327 + 10609 IPNPQERTLTL 11 101 641.3617478429991 1280.708942752798 2 641.36181640625 MULTI HCD FTMS 0 0 0 10760 893212.1875 1 0 0 1 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 146.4822387559645 0.0001382736324510468 2 {I|L}PNPQE 6 5 90.326 0 0 7.0528 0 0 0 599.351931578757 599.351931578757 46.92352238386949 0 0 0 0 1.6549471895720984 1.3979400086720375 1.326348700266608 0.5387254899964358 + {I|L}PNPQE 7.0528 + + 4503 + NaN NaN 313878.5 NaN 7972 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10762 51.922 NaN 1242600 35 0 263970 0.262 + 30020 VFPEKGYSF 9 63 537.2689140649122 1072.5232751966244 2 537.2691650390625 MULTI HCD FTMS 0 0 0 10760 393010.5 0.6383298294482675 -9 0.2653465270996094 2 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 24.990960013464015 0.14443998892849796 2 V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F} 9 4 + 31.137 0 0 2.9031 2.9031 85.663 0 0 0 6.4440217936548585 5.959471728614577 5.959471728614577 10.044321917401078 0 1.305462187404089 0 0 0 V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]E[KA]{[CT]|[{M(Oxidation (M))|F}G]}E{M(Oxidation (M))|F};V{M(Oxidation (M))|F}P[YQ][SG]Y{I|L} 2.9031;1.9666;1.1471 -;-;- 77 + NaN NaN 285806.8 NaN 7973 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10763 51.925 NaN 856330 35 0 52007 0.261 + 6664 FPNAIEHTL 9 91 521.2715994128109 1040.5286458924218 2 521.27197265625 MULTI HCD FTMS 0 0 0 10760 339611.59375 0.24957856119123395 -11 0.3174552917480469 3 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 145.12958885780327 1.3974915176135797E-05 2 {I|L}MNA{I|L}EH 7 4 91.609 0 0 8.804 0 0 0 229.11924158267814 229.11924158267814 44.65350013324773 0 0 0 0 2.447621246364342 2 2.3494850021680094 0 {I|L}MNA{I|L}EH 8.804 - 2037 + NaN NaN 216190.7 NaN 7974 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10764 51.929 NaN 404880 35 0 37398 0.261 + 35275 YVVANIGTR 9 69 496.78002555465775 NaN 0 496.763671875 PEAK HCD FTMS 0 0 0 10760 13742.7119140625 0.5271109027186378 -1 0.02625274658203125 4 Unmodified _YVVANIGTR_ VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant 12.531546534597751 0.23452071659215576 2 PVVGTAH 7 6 37.472 0 0 3.7791 0 0 165.10947630287177 162.05567346744377 327.16514977031557 0 0 0 0 0 0 0 1.2302046884880937 0 PVVGTAH 3.7791 - 276 + NaN NaN 164815.1 NaN 7975 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10765 51.932 NaN 121110 35 0 8512.7 0.261 + 116 ADSVLSLTF 9 61 476.7522301380249 951.4899073428498 2 476.7523498535156 MULTI HCD FTMS 0 0 0 10760 36020.25 0.44387839832653336 4 -0.1182403564453125 5 Unmodified _ADSVLSLTF_ ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF 7.910154910731844 0.2910521888787154 2 T[NG] 3 9 16.567 0 0 1.7411 0 0 661.368063936403 0 661.368063936403 0 3.0719686320084385 0 0 0 0.3494850021680094 0 0 0.5 T[NG] 1.7411 - 29 + NaN NaN 103968.7 NaN 7976 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10766 51.935 NaN 120020 35 0 12516 0.261 + -1 YADPSQDDCF 10 39 406.48588919650575 NaN 0 406.48577880859375 PEAK HCD FTMS 0 0 0 10760 4396.60546875 0.1280849208655002 1 -0.02959442138671875 6 Carbamidomethyl (C) _YADPSQDDC(Carbamidomethyl (C))F_ REV__ENSG00000138615|ENST00000261883|CILP 0.776531954647913 0.3395196853010637 2 K 1 -1 5.4846 0 0 0.67631 0 0 334.68682248305214 345.15314661197505 679.8399690950272 0 0 0 0 0 0 0 0 0 K 0.67631 - 2 + NaN NaN 107111.6 NaN 7977 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10767 51.938 NaN 136790 35 0 9455.8 0.261 -1 TYMKDLYQL 9 41 595.7918841297687 1189.5692153263374 2 595.7913208007812 MULTI HCD FTMS 0 0 0 10760 14306.4228515625 0.10614042808296195 29 -0.756195068359375 7 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ ENSG00000146376|ENST00000368149|ARHGAP18;nc|ENSG00000146376|Q8N392-2|ARHGAP18 6.2057823575117 0.30397260197431997 2 Q{I|L} 2 -1 20.969 0 0 1.7627 0 0 930.4162515728539 0 930.4162515728539 0 19.3753063169585 0 0 0 0 0 0 0 Q{I|L} 1.7627 + + 5 NaN NaN 108932.3 NaN 7978 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10768 51.942 NaN 108930 35 0 5999 0.261 + 30346 VLFHSSPLLL 10 49 563.3369877757476 1124.6594226182951 2 563.8381958007812 MULTI HCD FTMS 0 0 0 10760 16634.568359375 0.12384092419199563 9 -0.2562446594238281 8 Unmodified _VLFHSSPLLL_ REV__ENST00000287169.7_1_11:57440401-57440632:+|nuORF 6.2057823575117 0.44245551207394906 2 {I|L}{I|L} 2 -1 20.969 0 0 1.8645 0 0 880.4819281193757 0 880.4819281193757 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.8645 + + 2 NaN NaN 97852.7 NaN 7979 2787 10760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10770 51.947 NaN 1269900 35 0 281450 0.327 + 30021 VFPEKGYSF 9 67 537.2689140649122 1072.5232751966244 2 537.2691650390625 MULTI HCD FTMS 0 0 0 10769 456330.1875 0.7411740163659011 -8 0.22901535034179688 1 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 24.990960013464015 0.14443998892849796 2 V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F} 9 4 + 29.956 0 0 2.793 2.793 82.971 0 0 0 4.382572377596507 5.914697515349946 4.382572377596507 7.15706701743672 0 1.305462187404089 0 0 0 V{M(Oxidation (M))|F}P[YQ][VS]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]E[{I|L}A]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}S{M(Oxidation (M))|F};V{M(Oxidation (M))|F}P[YQ][SG][Y{I|L}] 2.793;2.1257;0.80103 -;-;- 63 + NaN NaN 296748 NaN 7980 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10771 51.951 NaN 496390 35 0 65091 0.261 -1 IPHMDIEAL 9 63 527.7655620720968 NaN 0 527.7657470703125 PEAK HCD FTMS 0 0 0 10769 291857.75 0.7992572458791533 -2 0.05584716796875 2 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 39.957323273324995 0.07841223356700552 2 {I|L}AEDYE 6 -1 40.544 0 0 3.8484 0 0 131.09464954485355 199.1086825006469 330.2033320455005 0 0 0 0 0 0.9247425010840047 0 1.0941876774005248 0 {I|L}AEDYE 3.8484 - 151 + NaN NaN 175817.6 NaN 7981 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10772 51.955 NaN 163930 35 0 16016 0.261 + 30956 VRNHTRNCE 9 55 564.770555498012 1127.5265580628238 2 564.7694091796875 MULTI HCD FTMS 0 0 0 10769 83332.484375 0.4486246500166343 4 -0.11159133911132812 3 Unmodified _VRNHTRNCE_ REV__ENSG00000164761|ENST00000297350|TNFRSF11B 21.536976647645854 0.1742816388551942 2 TN[EC] 4 -1 39.253 0 0 3.4813 0 0 662.3751629925811 0 662.3751629925811 0 27.825834421237516 0 0 0 1.5 0 0.805462187404089 0 TN[EC] 3.4813 - 82 NaN NaN 113646.3 NaN 7982 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10773 51.958 NaN 214350 35 0 18010 0.261 + 13391 KYPDLANFW 9 66 577.2857831821948 1152.5570134311895 2 577.3050537109375 MULTI HCD FTMS 0 0 0 10769 58497.46484375 0.4993604001778782 3 -0.08864593505859375 4 Unmodified _KYPDLANFW_ ENSG00000161791|ENST00000335154|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 7.289230182591677 0.29575926068275815 2 G{M(Oxidation (M))|F}S 3 8 28.94 0 0 2.511 0 0 0 858.4142574760939 858.4142574760939 7.971062485323515 0 0 0 0 0.4247425010840047 0 0 0 G{M(Oxidation (M))|F}S 2.511 - 199 + NaN NaN 129785.1 NaN 7983 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10774 51.961 NaN 128680 35 0 7217.5 0.261 -1 YPDRIMNTF 9 45 586.7738624670574 NaN 0 586.7741088867188 PEAK HCD FTMS 0 0 0 10769 53362.80078125 0.6809390673428433 20 -0.49509429931640625 5 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 17.44264345198275 0.2045637549147401 2 N{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6614 0 0 266.12577561595214 641.3051241510374 907.4308997669896 0 0 0 0 0 0.8494850021680094 0 0 0 N{M(Oxidation (M))|F} 1.6614 - 23 + NaN NaN 119502 NaN 7984 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10775 51.965 NaN 141360 35 0 13481 0.262 + 4247 EVGGKVPYI 9 45 481.27149825037884 960.5284435675577 2 481.2706604003906 MULTI HCD FTMS 0 0 0 10769 38677.94140625 0.36783526566394403 2 -0.0624237060546875 6 Unmodified _EVGGKVPYI_ ENSG00000171121|ENST00000392685|KCNMB3;nc|ENSG00000171121|Q9NPA1-2|KCNMB3;nc|ENSG00000171121|Q9NPA1-4|KCNMB3;nc|ENSG00000171121|Q9NPA1|KCNMB3 10.073929032068715 0.27331982688540024 2 Y{I|L} 2 7 25.969 0 0 2.7036 0 0 666.3702029367391 0 666.3702029367391 0 24.3753063169585 0 0 0 0.5 0 0 0 + Y{I|L} 2.7036 + + 9 NaN NaN 118708.7 NaN 7985 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10776 51.968 NaN 154010 35 0 12021 0.261 + 29449 TYTSNLVRL 9 65 533.7992445581756 1065.583936183151 2 533.7982788085938 MULTI HCD FTMS 0 0 0 10769 41237.375 0.9748659679896736 1 -0.02956390380859375 7 Unmodified _TYTSNLVRL_ ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 26.268140514670165 0.13340543277302316 2 [YT]TK{[DA]|[EG]}VR{I|L} 9 3 + 54.683 0 0 5.1318 5.1318 84.732 0 0 0 26.438937347570075 1.2224122066494658 1.2224122066494658 5.440680443502757 0 0.7302046884880937 2 0.4247425010840047 0 [YT]TK{[DA]|[EG]}VR{I|L};[YT]TS{[QV]|[N{I|L}]|[RA]|[KV]}VR{I|L} 5.1318;4.6212 -;+ + 58 + NaN NaN 104671.9 NaN 7986 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10777 51.971 NaN 168480 35 0 24208 0.261 + 1118 AYKSEVVYF 9 56 553.2817827609438 1104.5490125886874 2 553.282958984375 MULTI HCD FTMS 0 0 0 10769 31854.46484375 0.3906525842710409 -4 0.10836029052734375 8 Unmodified _AYKSEVVYF_ ENSG00000106714|ENST00000297668|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000283378|ENST00000636699|CNTNAP3C;ENST00000377653.2_1_9:39174468-39266986:-|nuORF;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3 27.628801355627647 0.12213550946336599 2 VY{M(Oxidation (M))|F} 3 6 41.198 0 0 3.7298 0 0 677.3383010239638 0 677.3383010239638 0 25.713337517843655 0 0 0 1.5 0 0 0 + VY{M(Oxidation (M))|F} 3.7298 + + 40 NaN NaN 116433.3 NaN 7987 2788 10769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10779 51.976 NaN 1777800 35 0 447530 0.327 -1 TSRPQPSSSAM 11 94 582.7694049577705 1163.5242569823408 2 582.7696533203125 MULTI HCD FTMS 0 0 0 10778 979543.25 0.6890804910018116 3 -0.08202743530273438 1 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 19.361941925380144 0.2883811769592959 2 [YR]{M(Oxidation (M))|F}STSEGA{M(Oxidation (M))|F} 10 -1 + 85.87 0 0 7.3802 7.3802 93.13 0 0 0 1.478174818886373 73.88025969857303 1.478174818886373 15.026975159433533 0 2.6549471895720984 1.0969100130080565 0.6747425010840047 0 [YR]{M(Oxidation (M))|F}STSEGA{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}STSEQ{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}ST[DV][YN];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E[H{I|L}]SEGA{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AE[H{I|L}]SEGA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}ES[H{I|L}]EGA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E[H{I|L}]SEQ{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AES[H{I|L}]EGA{M(Oxidation (M))|F};[YN][{I|L}V][HD]EGA{M(Oxidation (M))|F};[YN][DV][H{I|L}]EGA{M(Oxidation (M))|F} 7.3802;6.0887;3.9535;3.7686;3.4387;2.6701;2.4771;2.3402;2.328;2.1767 -;-;-;-;-;-;-;-;-;- 2241 NaN NaN 364411.2 NaN 7988 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10780 51.981 NaN 1088400 35 0 103500 0.261 + 9975 IEHGIITNW 9 102 541.7850249789041 1081.555497024608 2 541.7852172851562 MULTI HCD FTMS 0 0 0 10778 627192.1875 0.24616660018868952 6 -0.17412567138671875 2 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 65.23502041540118 0.010630085227462206 2 VTNW 4 6 57.568 0 0 5.3227 0 0 563.3063559053603 0 563.3063559053603 0 31.097313944693514 0 0 0 1.4247425010840047 0 0.8494850021680094 0.28872548999643577 VTNW 5.3227 - 535 NaN NaN 243064.2 NaN 7989 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10781 51.984 NaN 710390 35 0 109930 0.261 -1 VMAPRTVLL 9 86 508.30225275526703 1014.5899525773341 2 508.30224609375 MULTI HCD FTMS 0 0 0 10778 325564.90625 0.7919739679822297 -1 0.02956390380859375 3 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 27.628801355627647 0.12213550946336599 2 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L} 9 -1 + 39.639 0 0 3.9069 3.9069 82.867 0 0 0 6.451199659452847 11.451199659452847 6.451199659452847 4.771212547196626 0 1.3494850021680094 0 0 0 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L};[{M(Oxidation (M))|F}V]A[RP][{I|L}T]{I|L}V;[{M(Oxidation (M))|F}V]A[NP]KKV{I|L};[{M(Oxidation (M))|F}V]A[RP]V[{I|L}T]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}V[RP][{I|L}T]V{I|L};[{M(Oxidation (M))|F}V]A[NP]KK{I|L}V;{[MS]|[{M(Oxidation (M))|F}A]}V[RP][{I|L}T]{I|L}V;{[MS]|[{M(Oxidation (M))|F}A]}V[NP]KKV{I|L};[{M(Oxidation (M))|F}V][PG]QKKV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}V[RP]V[{I|L}T]{I|L} 3.9069;3.4366;3.218;2.8948;2.8683;2.7477;2.398;2.1794;2.0362;1.8563 -;-;-;-;-;-;-;-;-;- 154 NaN NaN 192224.5 NaN 7990 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10782 51.988 NaN 245670 35 0 35853 0.261 + 24991 RYVFQSENTF 10 50 645.8094573676784 1289.6043618021567 2 645.8094482421875 MULTI HCD FTMS 0 0 0 10778 87360.8671875 0.5575268983935303 3 -0.08202743530273438 4 Unmodified _RYVFQSENTF_ ENSG00000107882|ENST00000369902|SUFU;nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU 55.24861242081279 0.058701489357514555 2 {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 7 3 65.764 0 0 5.0995 0 0 418.23219296947013 0 418.23219296947013 0 55.30594194769321 0 0 0 1.829689690656103 0 0 0 + {M(Oxidation (M))|F}QSENT{M(Oxidation (M))|F} 5.0995 + + 226 NaN NaN 126046.4 NaN 7991 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10783 51.991 NaN 189690 35 0 24524 0.261 -1 RFDEAYIYM 9 53 612.2738849924816 1222.5332170517631 2 612.2742309570312 MULTI HCD FTMS 0 0 0 10778 64346.36328125 0.48889515251294724 6 -0.17412567138671875 5 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 12.240655878213236 0.2545997876781172 2 Y{I|L}Y{M(Oxidation (M))|F} 4 -1 40.433 0 0 3.3073 0 0 618.2748890607437 0 618.2748890607437 0 34.94850021680094 0 0 0 1 0 0 0 Y{I|L}Y{M(Oxidation (M))|F} 3.3073 + + 11 NaN NaN 119147.6 NaN 7992 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10784 51.994 NaN 289930 35 0 30026 0.262 + 24393 RYIPTAAAF 9 59 505.27681951727675 1008.5390861013535 2 505.277099609375 MULTI HCD FTMS 0 0 0 10778 40115.16796875 0.006280566923688965 53 -1.2557525634765625 6 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 2 AA{M(Oxidation (M))|F} 3 6 33.06 0 0 3.278 0 0 701.38188368965 0 701.38188368965 0 21.584232097992576 0 0 0 0.9247425010840047 0 0 0 + AA{M(Oxidation (M))|F} 3.278 + + 35 NaN NaN 126868.7 NaN 7993 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10785 51.998 NaN 88720 35 0 10628 0.261 -1 LPAAGVGDMV 10 43 473.2394036775673 944.4642544219346 2 473.23895263671875 MULTI HCD FTMS 0 0 0 10778 38677.4921875 0.6561959628204322 5 -0.14788818359375 7 Oxidation (M) _LPAAGVGDM(Oxidation (M))V_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 13.90604991867851 0.3810395177745597 2 {[QN]|[E{I|L}]|[KN]}VN[QP]{M(Oxidation (M))|F}V 8 -1 + 36.203 0 0 3.8332 3.8332 86.126 0 0 0 9.291746928241125 24.21327198560853 9.291746928241125 9.262137858390812 0 0 0 0.3807196863200844 0 {[QN]|[E{I|L}]|[KN]}VN[QP]{M(Oxidation (M))|F}V;{[QN]|[E{I|L}]|[KN]}VGG[QP]{M(Oxidation (M))|F}V 3.8332;2.8525 -;- 36 NaN NaN 104023.9 NaN 7994 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10786 52.001 NaN 178480 35 0 22867 0.261 -1 HAVIQEYML 9 49 560.2786688205921 1118.542784707984 2 560.2788696289062 MULTI HCD FTMS 0 0 0 10778 34017.828125 0.07060214115907652 32 -0.801483154296875 8 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 22.736283301280096 0.1639198954644489 2 [Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L} 9 -1 + 36.628 0 0 3.2747 3.2747 88.989 0 0 0 1.183174735333175 30.68636235841013 1.183174735333175 36.62848732905716 0 0.9247425010840047 0 0.4247425010840047 0 [Q{I|L}][HD][{I|L}A]Y{M(Oxidation (M))|F}{I|L} 3.2747 - 33 NaN NaN 124279.2 NaN 7995 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10787 52.004 NaN 63466 35 0 4172.6 0.261 -1 QMEDCEEW 8 46 571.6920230647977 NaN 0 571.3126220703125 PEAK HCD FTMS 0 0 0 10778 7054.982421875 0.48069019009158215 1 -0.03285980224609375 9 Carbamidomethyl (C),Oxidation (M) _QM(Oxidation (M))EDC(Carbamidomethyl (C))EEW_ ENSG00000213213|ENST00000338005|CCDC183;ENST00000371682.7_1_9:139690828-139700853:+|nuORF;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000479371.5_1_9:139697227-139701184:+|nuORF;nc|ENSG00000213213|Q5T5S1-2|CCDC183;nc|ENSG00000213213|Q5T5S1-4|CCDC183 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108758.3 NaN 7996 2789 10778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10789 52.009 NaN 534350 35 0 57319 0.327 + 23742 RRCTVYVSM 9 75 557.7795443397043 1113.5445357462086 2 557.7801513671875 MULTI HCD FTMS 0 0 0 10788 258094.53125 0.19519848167758536 7 -0.18050384521484375 1 Unmodified _RRCTVYVSM_ REV__ENST00000473136.4_2_3:88178118-88178850:+|nuORF 14.838274106304384 0.23215694253501695 2 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 48.544 0 0 4.3594 0 0 662.3743544210005 0 662.3743544210005 0 32.11758134947864 0 0 0 1.5 0 1.274227503252014 0.7614393726401688 TN{[MS]|[{M(Oxidation (M))|F}A]} 4.3594 - 131 + NaN NaN 186293.7 NaN 7997 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10790 52.014 NaN 393600 35 0 64022 0.261 + -1 HKCLWMAI 8 67 529.7667077556803 1057.5188625781605 2 529.7507934570312 MULTI HCD FTMS 0 0 0 10788 15204.267578125 0.14613122258415223 14 -0.3277244567871094 2 Carbamidomethyl (C) _HKC(Carbamidomethyl (C))LWMAI_ REV__ENSG00000165695|ENST00000298545|AK8;REV__ENST00000476719.1_1_9:135601077-135753754:-|nuORF;REV__ENST00000477396.5_1_9:135702810-135749757:-|nuORF 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.3219 0 0 892.474259161948 0 892.474259161948 0 1.9010562085580318 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3219 + + 221 + NaN NaN 149373.2 NaN 7998 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10791 52.017 NaN 432320 35 0 90498 0.261 + 33445 YGSRLDYFQ 9 59 574.7716788375401 1147.52880474188 2 574.7723388671875 MULTI HCD FTMS 0 0 0 10788 199200.0625 0.2151408280286722 20 -0.4867744445800781 3 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 9 8 71.164 0 0 6.2015 0 0 220.0839033338694 0 220.0839033338694 0 51.05265951879793 0 0 0 0.7302046884880937 0 1.6237125054200234 0 SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 6.2015 - 310 + NaN NaN 160256.8 NaN 7999 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10792 52.02 NaN 92270 35 0 8415.4 0.262 + 8368 GYLADPAKF 9 52 491.25546388540874 980.4963748376175 2 491.2558898925781 MULTI HCD FTMS 0 0 0 10788 27169.05859375 0.171393850472688 5 -0.141265869140625 4 Unmodified _GYLADPAKF_ ENSG00000137547|ENST00000260102|MRPL15 34.40172386719151 0.0910440009062557 2 [YG]{I|L}ADK[PA]{M(Oxidation (M))|F} 9 2 + 67.91 0 0 6.9261 6.9261 65.487 0 0 0 0 0 0 0 0 1.3807196863200843 1.5228787452803376 0 0 [YG]{I|L}ADK[PA]{M(Oxidation (M))|F};[YG]{I|L}KDA[PA]{M(Oxidation (M))|F};[YG]{I|L}A[TA]A[PA]{M(Oxidation (M))|F};[YG]{I|L}A[KG][EP]{M(Oxidation (M))|F};[YG]{I|L}K[W{I|L}]{[DS]|[MA]|[CV]|TT} 6.9261;6.9261;5.112;4.7749;4.0688 -;-;-;-;- 110 + NaN NaN 95657 NaN 8000 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10793 52.024 NaN 222190 35 0 48322 0.261 + 15433 LPDKVAPTV 9 59 470.2789214939194 NaN 0 470.2685241699219 PEAK HCD FTMS 0 0 0 10788 19692.8046875 0.6085545026213908 4 -0.11502838134765625 5 Unmodified _LPDKVAPTV_ REV__ENSG00000138785|ENST00000340139|INTS12;REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant 10.799506525563784 0.2429139407627568 2 {M(Oxidation (M))|F}{I|L}K 3 -1 12.307 0 0 1.3113 0 0 99.08857713939945 448.1820467584594 547.2706238978589 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}K 1.3113 - 26 + NaN NaN 124308.2 NaN 8001 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10794 52.027 NaN 115960 35 0 15985 0.261 + -1 CMPLEVPL 8 40 487.7382167902317 973.4618806472635 2 487.7372131347656 MULTI HCD FTMS 0 0 0 10788 15068.841796875 0.4467138143575882 1 -0.02622222900390625 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))PLEVPL_ REV__ENST00000525484.5_1_11:8986226-8986655:+|nuORF 9.347437153973935 0.5250182646323369 2 W 1 -1 3.0989 0 0 0.31834 0 0 515.2199810884729 269.14545618228755 784.3654372707604 0 0 0 0 0 0 0 0 0 W 0.31834 - 1 + NaN NaN 103681.4 NaN 8002 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10795 52.03 NaN 78228 35 0 4618.2 0.261 + 25715 SKFDVNYAF 9 42 545.7642198357686 NaN 0 545.7930908203125 PEAK HCD FTMS 0 0 0 10788 15056.572265625 1 0 0 7 Unmodified _SKFDVNYAF_ ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1 4.75600775471527 0.27219989241163056 2 N 1 8 6.5938 0 0 0.60521 0 0 576.2908775604059 396.1637056940063 972.4545832544122 0 0 0 0 0 0 0 0 0.5 + N 0.60521 + + 2 + NaN NaN 98222.4 NaN 8003 2790 10788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10797 52.035 NaN 102620 35 0 20145 0.327 + 15839 LPISGTHLE 9 40 483.7664976137586 965.5184422943172 2 483.766357421875 MULTI HCD FTMS 0 0 0 10796 44135.48046875 0.4277051300920256 1 -0.022945404052734375 1 Unmodified _LPISGTHLE_ REV__ENSG00000128908|ENST00000648947|INO80 28.486842064014134 0.11819662193267319 2 {I|L}P 2 -1 41.198 0 0 4.2669 0 0 0 752.3584377205697 752.3584377205697 24.744237387763093 0 0 0 0 0.5 1.5228787452803376 0 0 {I|L}P 4.2669 + + 17 + NaN NaN 95750.8 NaN 8004 2791 10796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10798 52.04 NaN 210930 35 0 15731 0.261 + 33406 YGNTLVEFR 9 60 549.7825931689878 1097.5506334047755 2 549.7821655273438 MULTI HCD FTMS 0 0 0 10796 80514.9921875 0.17149782579118597 7 -0.17722702026367188 2 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 34.40172386719151 0.0910440009062557 2 VTN{[DS]|[MA]|[CV]|TT} 5 7 43.015 0 0 3.9192 0 0 563.3074818341812 0 563.3074818341812 0 39.916440611282624 0 0 0 1.5 0 0.3807196863200844 0.3494850021680094 VTN{[DS]|[MA]|[CV]|TT} 3.9192 - 43 NaN NaN 120402.1 NaN 8005 2791 10796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10799 52.043 NaN 135710 35 0 16277 0.261 + 34177 YPDGNEGAIRF 11 49 619.7937047396514 1237.5728565461027 2 619.79345703125 MULTI HCD FTMS 0 0 0 10796 62914.6484375 0.977833392486866 2 -0.0591888427734375 3 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 32.89776655970281 0.18269067959614227 2 YPD[NG]EGA{I|L}[R{M(Oxidation (M))|F}] 11 0 + 78.593 0 0 6.3506 6.3506 85.32 0 0 0 77.62364055855288 7.367585652254178 7.367585652254178 1.8045606445813007 0 1.1382104921644451 2 0 0 + + YPD[NG]EGA{I|L}[R{M(Oxidation (M))|F}];YPD[NG]EQ{I|L}[R{M(Oxidation (M))|F}] 6.3506;6.2047 +;- + 105 + NaN NaN 102272.1 NaN 8006 2791 10796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10800 52.047 NaN 279350 35 0 31838 0.262 + 24394 RYIPTAAAF 9 68 505.27681951727675 1008.5390861013535 2 505.27716064453125 MULTI HCD FTMS 0 0 0 10796 58366.08984375 0.009137993230472747 55 -1.2746925354003906 4 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 17.11289562659939 0.2125047172822487 2 AA{M(Oxidation (M))|F} 3 6 31.995 0 0 3.1724 0 0 701.3845082013687 0 701.3845082013687 0 25.00508444608478 0 0 0 0.8807196863200843 0 0 0 + AA{M(Oxidation (M))|F} 3.1724 + + 27 NaN NaN 132061.4 NaN 8007 2791 10796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10801 52.05 NaN 186020 35 0 12417 0.261 + 21907 QDNDIFRFV 9 62 577.2857831821948 1152.5570134311895 2 577.2864379882812 MULTI HCD FTMS 0 0 0 10796 17604.11328125 0.15027654747744043 6 -0.1542816162109375 5 Unmodified _QDNDIFRFV_ REV__ENSG00000122543|ENST00000242104|OCM;REV__ENSG00000135175|ENST00000257627|OCM2 17.11289562659939 0.2125047172822487 2 SW 2 -1 24.464 0 0 2.1226 0 0 861.4381917711844 0 861.4381917711844 0 -2.451907099188162 -2.451907099188162 0 0 0.5 0 0 0 SW 2.1226 - 260 NaN NaN 128977.8 NaN 8008 2791 10796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10802 52.053 NaN 199370 35 0 11997 0.261 + 14872 LKKWFGIFAW 10 35 648.3708870779377 NaN 0 648.0584106445312 PEAK HCD FTMS 0 0 0 10796 13778.94140625 1 0 0 6 Unmodified _LKKWFGIFAW_ REV__ENST00000401424.5_1_11:13299386-13371514:+|nuORF;REV__ENST00000534544.5_2_11:13298505-13371514:+|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117541.4 NaN 8009 2791 10796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10804 52.058 NaN 1896000 35 0 116510 0.326 + 6665 FPNAIEHTL 9 103 521.2715994128109 1040.5286458924218 2 521.2718505859375 MULTI HCD FTMS 0 0 0 10803 788406.375 0.5793952041912481 -6 0.16743850708007812 1 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 157.7952019732125 5.857147217999733E-07 2 {I|L}MNA{I|L}EH 7 4 84.465 0 0 8.1175 0 0 0 229.1193026178344 229.1193026178344 23.931467187710297 0 0 0 0 2.4005149978319906 1.6989700043360187 2.3494850021680094 0 {I|L}MNA{I|L}EH 8.1175 - 5023 + NaN NaN 372719.1 NaN 8010 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10805 52.063 NaN 419880 35 0 59772 0.261 + 10610 IPNPQERTLTL 11 74 641.3617478429991 1280.708942752798 2 641.3618774414062 MULTI HCD FTMS 0 0 0 10803 271730.5 0.30421718803517783 5 -0.13133621215820312 2 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 76.41605946988834 0.009108940929514408 2 {I|L}PNPQE 6 5 67.242 0 0 5.2504 0 0 0 599.3509615533811 599.3509615533811 42.54940636348586 0 0 0 0 1.2614393726401687 0 1.086696871556164 0.2614393726401688 + {I|L}PNPQE 5.2504 + + 271 + NaN NaN 152283.8 NaN 8011 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10806 52.066 NaN 241850 35 0 19540 0.263 + 32730 WPVGGDSRF 9 66 510.74864528041394 1019.4827376276279 2 510.7486877441406 MULTI HCD FTMS 0 0 0 10803 108028.296875 1 0 0 3 Unmodified _WPVGGDSRF_ ENSG00000141738|ENST00000309156|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 24.990960013464015 0.14443998892849796 2 WPVG[DG]A[YR] 9 2 + 61.137 0 0 5.9968 5.9968 84.107 0 0 0 40.16765926813832 2.243012119929091 2.243012119929091 0.45757490560674796 0 1.305462187404089 1.5228787452803376 0 0 WPVG[DG]A[YR];WPV[DN]A[YR];WP{[DA]|[EG]}AAA[YR];WP{[DA]|[EG]}[PA]V[HQ];[WP]V[PA][HA]EN;[WP]V[PA][HA]QD;WP{[DA]|[EG]}{[NV]|[RG]}[YR] 5.9968;5.952;3.7979;3.7076;3.6196;3.1516;2.789 -;-;-;-;-;-;- 212 + NaN NaN 135705.9 NaN 8012 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10807 52.07 NaN 407460 35 0 94976 0.261 + 33210 YFDPANGKF 9 55 529.7503156296282 1057.4860783260563 2 530.7691040039062 MULTI HCD FTMS 0 0 0 10803 16559.734375 0.32069976271062584 6 -0.1542816162109375 4 Unmodified _YFDPANGKF_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 10.823927491677226 0.26684000660059787 2 [Y{I|L}]{I|L}DQD 6 8 40.411 0 0 3.8214 0 0 0 307.10842875013753 307.10842875013753 6.343115646969935 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L}DQD 3.8214 - 109 NaN NaN 152543.4 NaN 8013 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10808 52.073 NaN 317460 35 0 29349 0.261 + 31538 VYGIRLEHF 9 63 567.3087040388775 1132.602855144555 2 567.308349609375 MULTI HCD FTMS 0 0 0 10803 78831.984375 0.6496173110868215 -1 0.022945404052734375 5 Unmodified _VYGIRLEHF_ ENSG00000143228|ENST00000271452|NUF2;ENST00000487578.2_1_1:163295841-163298095:+|nuORF;ENST00000490881.5_1_1:163291794-163297702:+|nuORF 21.536976647645854 0.1742816388551942 2 VYAVR{[QN]|[E{I|L}]|[KN]}H{M(Oxidation (M))|F} 9 2 + 38.578 0 0 3.4062 3.4062 81.356 0 0 0 2.1349281074461928 2.1349281074461928 2.1349281074461928 2.1349281074461928 0 1.1677353201839438 2 0 0 VYAVR{[QN]|[E{I|L}]|[KN]}H{M(Oxidation (M))|F};[YV]N[PA]RV[PA]{M(Oxidation (M))|F};VYAVR[PA]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}[VS]VR[PA]NP{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]VR{[QN]|[E{I|L}]|[KN]}H{M(Oxidation (M))|F};[YN]V[PA]RVAP{M(Oxidation (M))|F};V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VR[PA]NP{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]VR[PA]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WE][KT]RVAP{M(Oxidation (M))|F} 3.4062;3.2177;2.9671;1.8972;1.8008;1.467;1.4558;1.3617;0.80474 -;-;-;-;-;-;-;-;- 247 + NaN NaN 135824.5 NaN 8014 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10809 52.076 NaN 170710 35 0 21694 0.261 + -1 LSPSFSPSM 9 54 484.72332867227175 NaN 0 484.7068176269531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LSPSFSPSM(Oxidation (M))_ REV__ENSG00000166341|ENST00000299441|DCHS1 15.847184025352803 0.21527282152051216 2 S{M(Oxidation (M))|F} 2 -1 13.271 0 0 1.3718 0 0 131.12985847033934 599.2146700494749 730.3445285198143 0 0 0 0 0 0 0 0.3807196863200844 0 S{M(Oxidation (M))|F} 1.3718 + + 20 + NaN NaN 116506.6 NaN 8015 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10810 52.08 NaN 203800 35 0 22590 0.261 + 694 APWLPPPGL 9 58 474.27126825510214 NaN 0 474.2620544433594 PEAK HCD FTMS 0 0 0 10803 15705.638671875 1 0 0 7 Unmodified _APWLPPPGL_ ENST00000313080.8_1_17:74475239-74475982:-|nuORF 20.871210003555333 0.18155047927120396 2 PDA 3 8 10.177 0 0 1.0752 0 0 71.05369183989349 589.3362193178168 660.3899111577103 0 0 0 0 0 0 0 0 0 PDA 1.0752 - 44 + NaN NaN 120493 NaN 8016 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10811 52.083 NaN 158610 35 0 19539 0.261 + 10987 IYEETSGMLLF 11 47 434.8820874394656 NaN 0 434.88104248046875 PEAK HCD FTMS 0 0 0 10803 19301.04296875 0.3385631645393983 -23 0.6398429870605469 8 Unmodified _IYEETSGMLLF_ ENSG00000140093|ENST00000261994|SERPINA10 7.0370850670814 0.32215795970748445 2 {I|L} 1 10 3.9794 0 0 0.45859 0 0 619.5974745842062 132.04541956119377 751.6428941454 0 0 0 0 0 0 0 0 0 + {I|L} 0.45859 + + 1 + NaN NaN 117863.1 NaN 8017 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10812 52.086 NaN 84512 35 0 7225.6 0.261 + 2605 DTWYLKNTVW 10 42 442.55394979897505 1324.6400199971251 3 442.5545959472656 MULTI HCD FTMS 0 0 0 10803 7174.03125 0.28559578975457806 1 -0.036243438720703125 9 Unmodified _DTWYLKNTVW_ REV__ENSG00000134569|ENST00000378623|LRP4 1.5922808571145555 0.4668755089467872 2 S 1 -1 6.9897 0 0 0.52767 0 0 582.2133975379439 652.3813570611936 1234.5947545991376 0 0 0 0 0 0 0 0 0 S 0.52767 - 5 + NaN NaN 96335.9 NaN 8018 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10813 52.09 NaN 145490 35 0 24621 0.261 + 21454 PWRLPFLGNF 10 51 416.2278010053873 NaN 0 416.2279357910156 PEAK HCD FTMS 0 0 0 10803 7311.72705078125 0.3015275345327408 4 -0.11505889892578125 10 Unmodified _PWRLPFLGNF_ CYP2J2|p.S80*|1|0.3|ENSG00000134716|chr1:59916073-59916074|-/A|frameshift_variant;ENSG00000134716|ENST00000371204|CYP2J2;ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000468257.1_1_1:60381746-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF 2.0860074813731053 0.33839895573887124 2 H 1 10 1.9897 0 0 0.2396 0 0 478.2695535715183 212.09266077213127 690.3622143436496 0 0 0 0 0 0 0 0 0 H 0.2396 - 2 + NaN NaN 112649.9 NaN 8019 2792 10803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10815 52.095 NaN 1488600 35 0 351920 0.327 -1 0 58 537.2790744107282 536.2717979441281 1 537.2689208984375 MULTI HCD FTMS 0 0 0 10814 29582.423828125 0.7833750531302881 4 -0.0950927734375 1 NaN NaN 2 {[{M(Oxidation (M))|F}H]|[RQ]}S{M(Oxidation (M))|F} 4 -1 + 18.416 0 0 3.4341 3.4341 87.739 0 0 0 1.3380312008851547 11.42667503568731 1.3380312008851547 18.416375079047498 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}S{M(Oxidation (M))|F} 3.4341 - 8 + NaN NaN 314588.8 NaN 8020 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10816 52.099 NaN 217840 35 0 39182 0.261 -1 MPQSMPEYAL 10 49 599.7593705461765 1197.5041881591528 2 599.7595825195312 MULTI HCD FTMS 0 0 0 10814 60005.69140625 0.6543459529474467 1 -0.0296173095703125 2 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 2 YA{I|L} 3 -1 35.445 0 0 2.9599 0 0 832.3078480451187 0 832.3078480451187 0 26.404243831634986 0 0 0 0.9247425010840047 0 0 0 YA{I|L} 2.9599 + + 28 NaN NaN 111705 NaN 8021 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10817 52.103 NaN 179050 35 0 19556 0.261 -1 VVMFVAFMIS 10 59 580.2966077174633 NaN 0 580.2764892578125 PEAK HCD FTMS 0 0 0 10814 6609.263671875 0.417468951920004 -1 0.036243438720703125 3 Oxidation (M) _VVM(Oxidation (M))FVAFMIS_ ENSG00000135218|ENST00000447544|CD36;nc|ENSG00000135218|P16671-3|CD36;nc|ENSG00000135218|P16671-4|CD36 9.38312468134398 0.33215363477037435 2 P{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q 4 -1 15.918 0 0 1.3739 0 0 101.0899345868191 535.2420748346311 636.3320094214503 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q 1.3739 - 31 + NaN NaN 123480.8 NaN 8022 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10818 52.106 NaN 423180 35 0 130220 0.264 + 2767 DYAYLREHF 9 50 405.19272164678574 1212.5563355405573 3 405.1927490234375 MULTI HCD FTMS 0 0 0 10814 84220.3046875 0.7294586576110805 -3 0.08541107177734375 4 Unmodified _DYAYLREHF_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 29.081581746732265 0.1154664336125038 2 DYA 3 6 48.729 0 0 4.0187 0 0 0 860.4055603378135 860.4055603378135 31.25447181216778 0 0 0 0 0.7302046884880937 2 0 0 + DYA 4.0187 + + 26 + NaN NaN 145572.5 NaN 8023 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10819 52.109 NaN 103970 35 0 19340 0.261 -1 LPEWKENIM 9 43 588.29176253997 1174.56897214674 2 588.2920532226562 MULTI HCD FTMS 0 0 0 10814 43127.3984375 0.42790380730268707 12 -0.2619438171386719 5 Oxidation (M) _LPEWKENIM(Oxidation (M))_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 10.150570793230772 0.27265765907388223 2 {I|L}PEW 4 -1 31.938 0 0 2.7191 0 0 0 646.2924898736936 646.2924898736936 28.44335023848103 0 0 0 0 0.5 0 0 0 {I|L}PEW 2.7191 + + 27 + NaN NaN 106011.6 NaN 8024 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10820 52.113 NaN 185290 35 0 17194 0.261 + 21908 QDNDIFRFV 9 58 577.2857831821948 1152.5570134311895 2 577.2696533203125 MULTI HCD FTMS 0 0 0 10814 20257.130859375 0.17292388652076637 8 -0.18686294555664062 6 Unmodified _QDNDIFRFV_ REV__ENSG00000122543|ENST00000242104|OCM;REV__ENSG00000135175|ENST00000257627|OCM2 12.240655878213236 0.2545997876781172 2 W 1 -1 19.732 0 0 1.712 0 0 948.4674118460317 0 948.4674118460317 0 1.040713954336951 0 0 0 0.4247425010840047 0 0 0 W 1.712 - 218 + NaN NaN 110133.2 NaN 8025 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10821 52.116 NaN 82663 35 0 9462.5 0.262 -1 LSHYLQKGCRL 11 41 458.9143022763681 1373.7210774293044 3 458.9141845703125 MULTI HCD FTMS 0 0 0 10814 6918.48779296875 0.3245942967324365 1 -0.0296173095703125 7 Carbamidomethyl (C) _LSHYLQKGC(Carbamidomethyl (C))RL_ ENSG00000171793|ENST00000650070|CTPS1;ENST00000498694.1_1_1:41474453-41475914:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1 2.6312355333042263 0.4073809613003177 2 A 1 -1 16.99 0 0 1.2368 0 0 760.3876556537169 539.273587505932 1299.661243159649 0 0 0 0 0 1 0 0 0 A 1.2368 - 10 + NaN NaN 113463.9 NaN 8026 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10822 52.119 NaN 105480 35 0 13353 0.261 + -1 PWPCADCSC 9 51 576.6990044278161 NaN 0 576.5469360351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 3 Carbamidomethyl (C) _PWPC(Carbamidomethyl (C))ADC(Carbamidomethyl (C))SC(Carbamidomethyl (C))_ REV__ENST00000562734.5_1_16:57481439-57485011:+|nuORF 0.5247636613948944 0.2927039108006614 2 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.60707 0 0 310.9723878540363 677.3432711236936 988.31565897773 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.60707 + + 8 + NaN NaN 100312.6 NaN 8027 2793 10814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10824 52.124 NaN 557840 35 0 65653 0.327 + 10539 IPHMDIEAL 9 75 527.7655620720968 NaN 0 527.7655639648438 PEAK HCD FTMS 0 0 0 10823 328737.375 0.9002527051621634 4 -0.08842086791992188 1 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 58.678817012210395 0.027870599607392636 2 {I|L}AE{[YD]|[{M(Oxidation (M))|F}M]}E 6 6 38.193 0 0 3.6253 0 0 131.09473333066268 199.10859094791252 330.2033242785752 0 0 0 0 0 1.305462187404089 0 1.274227503252014 0 {I|L}AE{[YD]|[{M(Oxidation (M))|F}M]}E 3.6253 - 119 + NaN NaN 171437 NaN 8028 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10825 52.129 NaN 494760 35 0 68595 0.261 -1 VMAPRTVLL 9 62 508.30225275526703 1014.5899525773341 2 508.3024597167969 MULTI HCD FTMS 0 0 0 10823 259799.875 0.6319929879882049 4 -0.08842086791992188 2 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 27.628801355627647 0.12213550946336599 2 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L} 9 -1 + 38.12 0 0 3.7572 3.7572 84.38 0 0 0 1.6799871122562209 13.911962188136549 1.6799871122562209 9.018637558036676 0 1.3494850021680094 0 0.3252574989159953 0 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L};[{M(Oxidation (M))|F}V]A[RP]V[{I|L}T]{I|L};[{M(Oxidation (M))|F}V]A[RP][{I|L}T]{I|L}V 3.7572;2.8683;2.6697 -;-;- 56 NaN NaN 163227.8 NaN 8029 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10826 52.132 NaN 416810 35 0 36789 0.261 + 9976 IEHGIITNW 9 78 541.7850249789041 1081.555497024608 2 541.7853393554688 MULTI HCD FTMS 0 0 0 10823 181831.046875 0.07136684976320594 11 -0.23232650756835938 3 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 41.8396318013385 0.056899836730939755 2 VTNW 4 6 54.68 0 0 5.0557 0 0 563.3064413210369 0 563.3064413210369 0 31.74865027867405 0 0 0 1.4247425010840047 0 0.8494850021680094 0 VTNW 5.0557 - 201 NaN NaN 158664.2 NaN 8030 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10827 52.136 NaN 460970 35 0 100570 0.261 -1 TSRPQPSSSAM 11 61 582.7694049577705 1163.5242569823408 2 582.7694091796875 MULTI HCD FTMS 0 0 0 10823 188241.25 0.13242230292209636 8 -0.180145263671875 4 Oxidation (M) _TSRPQPSSSAM(Oxidation (M))_ ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4 19.361941925380144 0.2883811769592959 2 {M(Oxidation (M))|F}STSVSA{M(Oxidation (M))|F} 8 -1 77.861 0 0 6.6918 0 0 319.16588027168126 0 319.16588027168126 0 72.37633498808712 0 0 0 2.9916440611282624 0 0.6989700043360187 0 {M(Oxidation (M))|F}STSVSA{M(Oxidation (M))|F} 6.6918 - 577 NaN NaN 174099 NaN 8031 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10828 52.139 NaN 555620 35 0 122270 0.261 + -1 EMLDCLLEM 9 64 593.2453920307562 1184.4762311283123 2 593.2452392578125 MULTI HCD FTMS 0 0 0 10823 197374.765625 0.2850841974337697 -7 0.2070465087890625 5 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 2 [{I|L}V]{I|L}DE 5 -1 63.812 0 0 5.3874 0 0 0 612.1459650005568 612.1459650005568 37.88241865052136 0 0 0 0 1.805462187404089 1.6989700043360187 0.6549471895720985 0 [{I|L}V]{I|L}DE 5.3874 - 63 + NaN NaN 170361 NaN 8032 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10829 52.142 NaN 152780 35 0 10909 0.261 + 17392 LYQKDFLRI 9 53 598.3454924517845 1194.6764319703689 2 598.344970703125 MULTI HCD FTMS 0 0 0 10823 29398.78125 0.4491993202283978 1 -0.02623748779296875 6 Unmodified _LYQKDFLRI_ ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6 33.4449034751529 0.0954363425218424 2 {I|L}YQKD 5 4 73.998 0 0 6.194 0 0 0 544.3256929986936 544.3256929986936 68.51342204748164 0 0 0 0 1.1307196863200843 2 0.4247425010840047 0.5 + {I|L}YQKD 6.194 + + 38 + NaN NaN 106544.5 NaN 8033 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10830 52.145 NaN 121440 35 0 14222 0.261 + -1 VFCLFCIF 8 56 553.2641240216255 NaN 0 553.2819213867188 PEAK HCD FTMS 0 0 0 10823 12242.96875 1 0 0 7 2 Carbamidomethyl (C) _VFC(Carbamidomethyl (C))LFC(Carbamidomethyl (C))IF_ REV__ENST00000256646.6_1_1:120455139-120455295:-|nuORF 11.114462752807354 0.38822285293237185 2 YV 2 -1 10.969 0 0 0.99312 0 0 165.04254119018793 674.3169039361936 839.3594451263816 0 0 0 0 0 0 0 0 0 YV 0.99312 - 8 + NaN NaN 106196.3 NaN 8034 2794 10823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10832 52.15 NaN 239230 35 0 22823 0.327 + 20900 PKERMHVMS 9 61 557.7795443397043 1113.5445357462086 2 557.7803955078125 MULTI HCD FTMS 0 0 0 10831 101349.3203125 0.07665111441238746 12 -0.2618293762207031 1 Unmodified _PKERMHVMS_ REV__ENSG00000256294|ENST00000262894|ZNF225 15.847184025352803 0.2234401846867398 2 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 40.362 0 0 3.6246 0 0 662.3768927474737 0 662.3768927474737 0 29.90417829939986 0 0 0 1.3494850021680094 0 0.6861818737241735 0.3807196863200844 TN{[MS]|[{M(Oxidation (M))|F}A]} 3.6246 - 73 NaN NaN 131009.6 NaN 8035 2795 10831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10833 52.155 NaN 143820 35 0 7975.1 0.261 + 9107 HPFKDLVQL 9 59 548.811001960507 1095.607450987814 2 548.8114013671875 MULTI HCD FTMS 0 0 0 10831 48658.5 1 0 0 2 Unmodified _HPFKDLVQL_ ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A 24.990960013464015 0.14443998892849796 2 HP{M(Oxidation (M))|F} 3 6 26.682 0 0 2.4354 0 0 0 711.4043673150999 711.4043673150999 3.411290632962718 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.4354 + + 44 + NaN NaN 120678.1 NaN 8036 2795 10831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10834 52.158 NaN 146660 35 0 7001.4 0.261 -1 VYNENLVHMI 10 46 624.3080496613613 1246.6015463895226 2 624.2555541992188 MULTI HCD FTMS 0 0 0 10831 23124.169921875 0.11337145368257488 24 -0.581573486328125 3 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF 17.11289562659939 0.35104376501799556 2 [YV]{[VA]|[{I|L}G]}{[WN]|[YH]}V 7 -1 33.643 0 0 2.6988 0 0 0 412.1660250299438 412.1660250299438 30.54429298006957 0 0 0 0 0.7134679910804405 2 0 0.3252574989159953 [YV]{[VA]|[{I|L}G]}{[WN]|[YH]}V 2.6988 - 12 + NaN NaN 111988.4 NaN 8037 2795 10831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10835 52.162 NaN 284520 35 0 25631 0.262 + 35042 YTIRSSVAI 9 72 505.2870928742068 NaN 0 505.2769470214844 PEAK HCD FTMS 0 0 0 10831 8767.7529296875 1 0 0 4 Unmodified _YTIRSSVAI_ tr|U7SQS0|U7SQS0_FUSNUIron(III)transportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01769PE=3SV=1 4.75600775471527 0.27219989241163056 2 TN{M(Oxidation (M))|F} 3 8 10.824 0 0 1.0732 0 0 165.16743651664393 478.24350916080317 643.4109456774471 0 0 0 0 0 0 0 0 0.4247425010840047 TN{M(Oxidation (M))|F} 1.0732 - 28 + NaN NaN 135035.8 NaN 8038 2795 10831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10836 52.165 NaN 163740 35 0 21835 0.261 -1 HAVIQEYML 9 53 560.2786688205921 1118.542784707984 2 560.7802734375 MULTI HCD FTMS 0 0 0 10831 7277.52734375 0.02352013242245344 36 -0.8564033508300781 5 Oxidation (M) _HAVIQEYM(Oxidation (M))L_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 17.11289562659939 0.2125047172822487 2 Y{M(Oxidation (M))|F}{I|L} 3 -1 36.198 0 0 3.2362 0 0 677.3480657769228 0 677.3480657769228 0 29.20818753952375 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F}{I|L} 3.2362 + + 14 NaN NaN 112603.9 NaN 8039 2795 10831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10837 52.168 NaN 101030 35 0 10929 0.261 + -1 QNYYLSQMY 9 41 613.2627696366228 NaN 0 613.05126953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _QNYYLSQM(Oxidation (M))Y_ REV__ENSG00000180357|ENST00000326648|ZNF609 1.844237919475145 0.28630992268396543 2 Y 1 -1 6.9897 0 0 0.57082 0 0 166.018873158208 892.4005831354124 1058.4194562936204 0 0 0 0 0 0 0 0 0 Y 0.57082 + + 1 + NaN NaN 100212.3 NaN 8040 2795 10831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10839 52.173 NaN 389330 35 0 82301 0.327 + 33446 YGSRLDYFQ 9 60 574.7716788375401 1147.52880474188 2 574.7725830078125 MULTI HCD FTMS 0 0 0 10838 119408.515625 0.12896405052702803 26 -0.6240425109863281 1 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 9 8 69.346 0 0 6.0431 0 0 220.08472268763836 0 220.08472268763836 0 54.569940744530356 0 0 0 0.5 0 1.9731975075880328 0 SVST{M(Oxidation (M))|F}VS{[DS]|[MA]|[CV]|TT} 6.0431 - 189 + NaN NaN 141399.6 NaN 8041 2796 10838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10840 52.178 NaN 149190 35 0 42183 0.262 + 29998 VFLKAGASF 9 44 470.2686494524744 938.5227459717488 2 470.26824951171875 MULTI HCD FTMS 0 0 0 10838 67805.03125 0.5315692599569357 3 -0.06548690795898438 2 Unmodified _VFLKAGASF_ ENST00000368875.6_2_1:151298654-151299818:-|nuORF 32.78568957990786 0.09846250359632436 2 V{M(Oxidation (M))|F}{I|L}K[QA]S{M(Oxidation (M))|F} 8 2 + 46.139 0 0 4.9162 4.9162 91.242 0 0 0 26.318591023204405 12.919562702124452 12.919562702124452 46.13920993388689 0 1.305462187404089 0 0 0 V{M(Oxidation (M))|F}{I|L}K[QA]S{M(Oxidation (M))|F} 4.9162 - 47 + NaN NaN 108986.3 NaN 8042 2796 10838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10841 52.181 NaN 112860 35 0 4905 0.261 -1 YPDRIMNTF 9 49 586.77467895435 NaN 0 586.7741088867188 PEAK HCD FTMS 0 0 0 10838 34462.98046875 0.5112823153051419 -37 0.9910125732421875 3 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 10.150570793230772 0.24605859276004066 2 N{M(Oxidation (M))|F} 2 -1 15.969 0 0 1.3631 0 0 266.1274085905373 641.3040865533811 907.4314951439185 0 0 0 0 0 0.5 0 0 0 N{M(Oxidation (M))|F} 1.3631 - 19 + NaN NaN 104393.1 NaN 8043 2796 10838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10842 52.185 NaN 164800 35 0 6653 0.261 + -1 LPMRVNSTL 9 70 523.7851652376045 NaN 0 523.797607421875 PEAK HCD FTMS 0 0 0 10838 26689.94140625 0.6656901441274392 -10 0.2824974060058594 4 Oxidation (M) _LPM(Oxidation (M))RVNSTL_ REV__ZBTB20|p.L487V|1|0.26|ENSG00000181722|chr3:114350619-114350619|G/C|missense_variant 27.628801355627647 0.1361920736132224 2 T 1 -1 13.099 0 0 1.2528 0 0 131.07995129859177 810.3913668268186 941.4713181254103 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 T 1.2528 + + 18 + NaN NaN 110244.8 NaN 8044 2796 10838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10844 52.19 NaN 2376900 35 0 177430 0.327 + 6666 FPNAIEHTL 9 110 521.2715994128109 1040.5286458924218 2 521.2718505859375 MULTI HCD FTMS 0 0 0 10843 1138828.625 0.8369184530258439 -1 0.016277313232421875 1 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 114.20165948288297 0.0022564706844261533 2 {M(Oxidation (M))|F}PNA{I|L}EHT{I|L} 9 0 + 87.379 0 0 8.3976 8.3976 92.636 0 0 0 42.37384035499911 0.07438328311494047 0.07438328311494047 9.208187539523749 0 2.504432191740108 0 2.805462187404089 0 + + {M(Oxidation (M))|F}PNA{I|L}EHT{I|L};{M(Oxidation (M))|F}PGGA{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGA{I|L}EHT{I|L};{[QG]|[NA]}P{M(Oxidation (M))|F}{I|L}EHT{I|L};[NP]{M(Oxidation (M))|F}A{I|L}EHT{I|L};{[QG]|[NA]}{I|L}P[TP]ANP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TT[QP]HT{I|L};{[QG]|[NA]}P{I|L}[TP]ANP{M(Oxidation (M))|F};[{I|L}T]H{[QN]|[E{I|L}]|[KN]}ANP{M(Oxidation (M))|F} 8.3976;7.5126;6.8617;5.7555;5.4158;5.2056;5.0391;4.9556;4.9459;4.8096 +;-;+;-;-;-;-;-;-;- + 3509 + NaN NaN 446148 NaN 8045 2797 10843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10845 52.194 NaN 199000 35 0 13068 0.261 + 22626 QVIEEIEEM 9 57 568.2623551051661 1134.510157277132 2 568.2625732421875 MULTI HCD FTMS 0 0 0 10843 56032.7578125 0.6985336641896595 -1 0.016277313232421875 2 Oxidation (M) _QVIEEIEEM(Oxidation (M))_ ENSG00000149557|ENST00000278919|FEZ1;ENSG00000171055|ENST00000405912|FEZ2;ENST00000534022.1_1_11:125330178-125333397:-|nuORF;nc|ENSG00000171055|Q9UHY8-2|FEZ2 40.23920728925047 0.06424668180817725 2 E{I|L}EE{M(Oxidation (M))|F} 5 4 46.704 0 0 4.1167 0 0 469.25486952949376 0 469.25486952949376 0 20.76224748804595 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + E{I|L}EE{M(Oxidation (M))|F} 4.1167 + + 158 NaN NaN 121166.5 NaN 8046 2797 10843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10846 52.198 NaN 113390 35 0 15234 0.261 + 10611 IPNPQERTLTL 11 47 641.3617478429991 1280.708942752798 2 641.3618774414062 MULTI HCD FTMS 0 0 0 10843 53056.79296875 0.05939998771988319 10 -0.22259140014648438 3 Unmodified _IPNPQERTLTL_ ENSG00000096384|ENST00000371646|HSP90AB1 4.715918219556657 0.3982382512160552 2 {I|L}PN 3 8 26.198 0 0 2.0456 0 0 0 953.5035456131985 953.5035456131985 12.852809580671048 0 0 0 0 0 0 0 0 + {I|L}PN 2.0456 + + 13 + NaN NaN 103486 NaN 8047 2797 10843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10847 52.201 NaN 241130 35 0 29479 0.263 + 24395 RYIPTAAAF 9 59 505.27681951727675 1008.5390861013535 2 505.2766418457031 MULTI HCD FTMS 0 0 0 10843 35626.09375 0.0055777422196211825 61 -1.3567352294921875 4 Unmodified _RYIPTAAAF_ ENSG00000058262|ENST00000243253|SEC61A1;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2 13.90604991867851 0.24021115267848145 2 A{M(Oxidation (M))|F} 2 7 30.217 0 0 2.9961 0 0 772.4218275291934 0 772.4218275291934 0 23.226825097560422 0 0 0 0.9247425010840047 0 0 0 + A{M(Oxidation (M))|F} 2.9961 + + 13 NaN NaN 120365.9 NaN 8048 2797 10843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10848 52.204 NaN 162910 35 0 19620 0.261 + 35153 YVHILKPE 8 42 499.7869441109673 997.5593352887346 2 499.78704833984375 MULTI HCD FTMS 0 0 0 10843 36357.12890625 1 0 0 5 Unmodified _YVHILKPE_ KCNT2|p.Q418H|1|0.12|ENSG00000162687|chr1:196398603-196398603|C/G|missense_variant 9.347437153973935 0.5250182646323369 2 [YV]{[NV]|[RG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D 7 5 22.235 0 0 2.229 0 0 0 129.1455206379351 129.1455206379351 14.960310232820149 0 0 0 0 0.5 2 0 0 [YV]{[NV]|[RG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D 2.229 - 44 NaN NaN 121330 NaN 8049 2797 10843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10849 52.208 NaN 135900 35 0 10584 0.261 + 6676 FPNIPGKSL 9 52 486.77940574474616 971.5442585562923 2 486.7799072265625 MULTI HCD FTMS 0 0 0 10843 36075.48046875 0.2843809291426955 -11 0.29877471923828125 6 Unmodified _FPNIPGKSL_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 13.042465956692817 0.2476723265019929 2 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.5032 0 0 806.465505970158 0 806.465505970158 0 10 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5032 + + 10 + NaN NaN 121361.8 NaN 8050 2797 10843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10851 52.213 NaN 525500 35 0 145110 0.327 + 17086 LYLDEAHSI 9 59 530.768925257864 1059.523297582528 2 530.7689819335938 MULTI HCD FTMS 0 0 0 10850 262685.28125 0.7425449614065047 2 -0.052524566650390625 1 Unmodified _LYLDEAHSI_ ENSG00000100596|ENST00000216484|SPTLC2 96.28474662873226 0.004361282420133734 2 [Y{I|L}]{I|L}DEAHS{I|L} 9 0 + 84.364 0 0 7.9624 7.9624 94.061 0 0 0 24.13734275855269 75.92023425729828 24.13734275855269 14.542425094393238 0 1.8494850021680094 1.6989700043360187 0.3807196863200844 0 + + [Y{I|L}]{I|L}DEAHS{I|L};[Y{I|L}]D{I|L}EAHS{I|L} 7.9624;6.5899 +;- + 148 NaN NaN 167856.4 NaN 8051 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10852 52.217 NaN 329600 35 0 45699 0.261 + -1 EVTSWLSM 8 64 484.72326006371924 NaN 0 484.7067565917969 PEAK HCD FTMS 0 0 0 10850 6470.17724609375 0.3269986467887712 -5 0.11803817749023438 2 Oxidation (M) _EVTSWLSM(Oxidation (M))_ REV__ENST00000562354.2_1_16:31719651-31719993:+|nuORF 32.116972079565 0.3772972708913157 2 S{M(Oxidation (M))|F} 2 -1 14.776 0 0 1.5274 0 0 131.13099608219323 599.2135714166624 730.3445674988557 0 0 0 0 0 0 0 0.3807196863200844 0 S{M(Oxidation (M))|F} 1.5274 + + 67 + NaN NaN 136480.2 NaN 8052 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10853 52.221 NaN 314790 35 0 35345 0.261 + 528 APDAKSFVL 9 62 474.2632437337994 946.5119345343988 2 474.2625732421875 MULTI HCD FTMS 0 0 0 10850 163538.296875 0.9826657937660588 -1 0.022945404052734375 3 Unmodified _APDAKSFVL_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF 59.368380827593164 0.01846506874148156 2 [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 9 0 + 71.168 0 0 7.5189 7.5189 89.406 0 0 0 16.966584062177432 53.69756690677704 16.966584062177432 6.7609125905568135 0 1.805462187404089 1.3979400086720375 0.6747425010840047 0.3054621874040891 + + [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]DKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VA{[QD]|[EN]|[WG]|[KD]|[RS]}[PA]{I|L} 7.5189;6.8046;6.3829;5.6686;5.5078;4.7935;4.3717;3.6574;2.2047 +;-;-;-;-;-;-;-;- + 258 NaN NaN 135050.5 NaN 8053 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10854 52.224 NaN 450350 35 0 105260 0.261 + 31372 VYADQPHIF 9 53 545.2719907098738 1088.5294284865474 2 545.2717895507812 MULTI HCD FTMS 0 0 0 10850 159680.390625 0.4277552073143872 -5 0.11803817749023438 4 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 92.65332237495696 0.004456439685314431 2 VYADQP 6 3 91.375 0 0 8.3944 0 0 0 412.19785486392817 412.19785486392817 68.18758762624412 0 0 0 0 1.9247425010840047 2 0.3494850021680094 0.6861818737241735 + VYADQP 8.3944 + + 260 + NaN NaN 154895.5 NaN 8054 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10855 52.227 NaN 192020 35 0 15626 0.261 + 9606 HSLQATVHQ 9 61 510.76708712745875 NaN 0 510.7491149902344 PEAK HCD FTMS 0 0 0 10850 17488.341796875 1 0 0 5 Unmodified _HSLQATVHQ_ ENSG00000187650|ENST00000339485|VMAC 7.289230182591677 0.2599242500475609 2 PVG 3 8 13.812 0 0 1.3548 0 0 186.11810054230347 577.2359713190061 763.3540718613096 0 0 0 0 0 0 0 0 0 PVG 1.3548 - 54 + NaN NaN 126486.3 NaN 8055 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10856 52.231 NaN 155400 35 0 8469.2 0.261 -1 MNILIIHTAF 10 62 594.8243664997849 1187.6341800663697 2 595.7911987304688 MULTI HCD FTMS 0 0 0 10850 12237.4853515625 0.9116985250796696 -1 0.022945404052734375 6 Oxidation (M) _M(Oxidation (M))NILIIHTAF_ tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1 3.5964929083625545 0.45626689593999237 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.58854 0 0 350.17545311500095 687.3649386041624 1037.5403917191634 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.58854 + + 19 + NaN NaN 124579.5 NaN 8056 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10857 52.234 NaN 55038 35 0 6573 0.263 + -1 NENVLMKWYGT 11 37 457.5516403249203 NaN 0 457.5517578125 PEAK HCD FTMS 0 0 0 10850 4202.42724609375 0.30716798132930884 1 -0.026264190673828125 7 Oxidation (M) _NENVLM(Oxidation (M))KWYGT_ REV__ENSG00000114115|ENST00000672186|RBP1;REV__nc|ENSG00000114115|P09455-2|RBP1;REV__nc|ENSG00000114115|P09455-3|RBP1;REV__nc|ENSG00000114115|P09455|RBP1 0.5059551277355931 0.3406848944787997 2 D 1 -1 5.4846 0 0 0.60066 0 0 97.70061844105312 697.3356417291624 795.0362601702155 0 0 0 0 0 0 0 0 0 D 0.60066 - 4 + NaN NaN 101012.1 NaN 8057 2798 10850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10859 52.239 NaN 1267000 35 0 302420 0.327 + 30022 VFPEKGYSF 9 51 537.2689140649122 1072.5232751966244 2 537.2688598632812 MULTI HCD FTMS 0 0 0 10858 496860.1875 0.807003066703076 3 -0.065460205078125 1 Unmodified _VFPEKGYSF_ ENSG00000151923|ENST00000436547|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;nc|ENSG00000151923|Q01085-2|TIAL1 24.990960013464015 0.14443998892849796 2 V{M(Oxidation (M))|F}P 3 6 25.802 0 0 2.4057 0 0 0 726.3114107721311 726.3114107721311 2.9267405679224368 0 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F}P 2.4057 + + 42 + NaN NaN 296805.3 NaN 8058 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10860 52.243 NaN 352780 35 0 72089 0.261 -1 PSEMSPPVSSM 11 65 582.7494030318238 NaN 0 582.7694091796875 PEAK HCD FTMS 0 0 0 10858 18331.24609375 1 0 0 2 Oxidation (M) _PSEM(Oxidation (M))SPPVSSM_ ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-2|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-7|NRG1 5.296884461304476 0.3270944076746277 2 {M(Oxidation (M))|F}STSVS 6 -1 20.839 0 0 1.7911 0 0 319.12251104236003 233.05690942935783 552.1794204717179 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}STSVS 1.7911 - 229 + NaN NaN 150709.2 NaN 8059 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10861 52.247 NaN 160530 35 0 12882 0.261 + 2768 DYAYLREHF 9 59 607.2858248194249 1212.5570967056497 2 607.2860107421875 MULTI HCD FTMS 0 0 0 10858 37113.71484375 0.6265821244625132 3 -0.065460205078125 3 Unmodified _DYAYLREHF_ ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598 12.240655878213236 0.2545997876781172 2 {[YD]|[{M(Oxidation (M))|F}M]}A 3 6 30.986 0 0 2.5555 0 0 0 860.4071082625434 860.4071082625434 10 0 0 0 0 0.805462187404089 2 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}A 2.5555 + + 68 NaN NaN 113899 NaN 8060 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10862 52.25 NaN 157460 35 0 24699 0.261 -1 MPQSMPEYAL 10 46 599.7593705461765 1197.5041881591528 2 599.7596435546875 MULTI HCD FTMS 0 0 0 10858 36327.140625 0.3961377144909569 7 -0.15048599243164062 4 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 4.897010918128616 0.4493830473644964 2 A{I|L} 2 -1 20.969 0 0 1.7511 0 0 995.3744633237171 0 995.3744633237171 0 13.979400086720375 0 0 0 0 0 0 0 A{I|L} 1.7511 + + 3 NaN NaN 110822.1 NaN 8061 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10863 52.253 NaN 210730 35 0 20441 0.264 + -1 MQECYQDLSF 10 49 440.8459408364524 1319.5159931095573 3 440.845947265625 MULTI HCD FTMS 0 0 0 10858 30997.23046875 0.4174999786917088 -3 0.06548690795898438 5 Carbamidomethyl (C) _MQEC(Carbamidomethyl (C))YQDLSF_ REV__ENSG00000153993|ENST00000284136|SEMA3D 0.776531954647913 0.4711933975711956 2 {I|L}{M(Oxidation (M))|F}E[HC] 5 -1 22.218 0 0 1.6838 0 0 672.2347851304221 0 672.2347851304221 0 6.0205999132796215 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}E[HC] 1.6838 - 15 NaN NaN 112608.5 NaN 8062 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10864 52.257 NaN 134270 35 0 12366 0.261 + 34178 YPDGNEGAIRF 11 44 619.7937047396514 1237.5728565461027 2 619.7929077148438 MULTI HCD FTMS 0 0 0 10858 39174.953125 0.6088657930400233 10 -0.23085403442382812 6 Unmodified _YPDGNEGAIRF_ ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 8.97624648632007 0.3788720818291249 2 YPD 3 8 31.198 0 0 2.5209 0 0 0 859.4061983697874 859.4061983697874 29.604093769761874 0 0 0 0 0.5 0 0 0 + YPD 2.5209 + + 18 + NaN NaN 104014.1 NaN 8063 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10865 52.26 NaN 154900 35 0 5970.7 0.261 + 33407 YGNTLVEFR 9 61 549.7825931689878 1097.5506334047755 2 549.7825317382812 MULTI HCD FTMS 0 0 0 10858 15422.0126953125 0.032849057979301086 15 -0.3753089904785156 7 Unmodified _YGNTLVEFR_ ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B 21.536976647645854 0.1742816388551942 2 TN{[DS]|[MA]|[CV]|TT} 4 7 27.351 0 0 2.492 0 0 662.3760861409068 0 662.3760861409068 0 19.90417829939986 0 0 0 1.3494850021680094 0 0 0.3054621874040891 TN{[DS]|[MA]|[CV]|TT} 2.492 - 27 + NaN NaN 110135.3 NaN 8064 2799 10858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10867 52.265 NaN 282240 35 0 36576 0.327 -1 VMAPRTVLL 9 53 508.3021521785982 1014.5897514239964 2 508.302490234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 12.240655878213236 0.2545997876781172 2 V{M(Oxidation (M))|F}A 3 -1 40.635 0 0 4.0051 0 0 0 694.4251887781967 694.4251887781967 9.436974992327123 0 0 0 0 1 1.2218487496163564 0 0 V{M(Oxidation (M))|F}A 4.0051 + + 23 + NaN NaN 134137.5 NaN 8065 2800 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10868 52.27 NaN 280480 35 0 47815 0.261 + 44 AATEQEISL 9 49 481.2456846263114 960.4768163194228 2 481.2455749511719 MULTI HCD FTMS 0 0 0 10866 108519.1015625 0.23474576580538742 -6 0.1409454345703125 2 Unmodified _AATEQEISL_ BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3 47.594388314883695 0.03493607795751234 2 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L} 9 4 + 81.889 0 0 8.5259 8.5259 94.56 0 0 0 14.638787285696964 74.89963434401865 14.638787285696964 13.015384402724592 0 1.8494850021680094 1.6989700043360187 0.8494850021680094 0.3807196863200844 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L};{[TV]|[{I|L}S]}[DG][AG]E{I|L}S{I|L} 8.5259;7.1708 -;- 51 NaN NaN 121809.2 NaN 8066 2800 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10869 52.273 NaN 148740 35 0 10036 0.261 + 925 AYCYENPEIL 10 49 607.7737648049499 1213.5329766766997 2 607.7752685546875 MULTI HCD FTMS 0 0 0 10866 47623.2578125 0.8872888672686798 -2 0.052524566650390625 3 Unmodified _AYCYENPEIL_ ENSG00000198569|ENST00000673835|SLC34A3 19.256988751693697 0.33098864134661865 2 {I|L}{I|L} 2 8 24.464 0 0 2.0159 0 0 969.35258681465 0 969.35258681465 0 15.880456295278407 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.0159 + + 34 NaN NaN 105284.8 NaN 8067 2800 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10870 52.276 NaN 161610 35 0 24855 0.264 + 14741 LHSLAHGP 8 62 416.2278010053873 NaN 0 416.2278137207031 PEAK HCD FTMS 0 0 0 10866 12886.8095703125 0.5314377698650651 12 -0.28325653076171875 4 Unmodified _LHSLAHGP_ nc|ENSG00000175600|Q9HAC7-2|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT 2.577480529830294 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.84169 0 0 53.10205824156714 627.2766817682249 680.3787400097921 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.84169 - 3 + NaN NaN 117468 NaN 8068 2800 10866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10872 52.281 NaN 968870 35 0 280190 0.327 + -1 EMLDCLLEM 9 76 593.2453920307562 1184.4762311283123 2 593.2457885742188 MULTI HCD FTMS 0 0 0 10871 692338.5 1 0 0 1 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 15.847184025352803 0.2234401846867398 2 {I|L}V{I|L}DE 5 -1 84.438 0 0 7.1287 0 0 0 612.1469019572019 612.1469019572019 43.208253071758875 0 0 0 0 1.8494850021680094 1.6989700043360187 1.0994850021680094 0 {I|L}V{I|L}DE 7.1287 - 92 + NaN NaN 232318.1 NaN 8069 2801 10871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10873 52.286 NaN 456320 35 0 54012 0.261 + 10540 IPHMDIEAL 9 60 527.7655620720968 NaN 0 527.7655029296875 PEAK HCD FTMS 0 0 0 10871 260879.515625 0.714422841828682 11 -0.2669563293457031 2 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 48.345845343767074 0.05150985380647864 2 {I|L}AEDYE 6 6 47.454 0 0 4.5043 0 0 131.0953700782357 199.10885034732658 330.2042204255623 0 0 0 0 0 1.1989700043360187 0 1.1307196863200843 0 {I|L}AEDYE 4.5043 - 157 + NaN NaN 152995 NaN 8070 2801 10871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10874 52.289 NaN 399610 35 0 86491 0.261 + 20790 PHDTPPPVSSM 11 63 582.7696369659596 NaN 0 582.7698364257812 PEAK HCD FTMS 0 0 0 10871 135016.609375 0.6106091164880502 -4 0.09177017211914062 3 Unmodified _PHDTPPPVSSM_ MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant 15.248480904072842 0.2934134091661347 2 SVSTS 5 9 45.037 0 0 3.8708 0 0 236.07967541728289 463.2103365533813 699.2900119706642 0 0 0 0 0 2.4604093769761874 0 0 0 SVSTS 3.8708 - 108 + NaN NaN 149375.3 NaN 8071 2801 10871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10875 52.293 NaN 297840 35 0 34763 0.261 + 17438 LYSAPRVWW 9 71 589.3111528121591 NaN 0 589.3270263671875 PEAK HCD FTMS 0 0 0 10871 15169.4482421875 1 0 0 4 Unmodified _LYSAPRVWW_ ENSG00000128309|ENST00000429360|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;nc|ENSG00000128309|P25325|MPST 7.910154910731844 0.25691533546754686 2 EST 3 8 13.984 0 0 1.1885 0 0 131.06528323381013 725.4007662408811 856.4660494746913 0 0 0 0 0 0 0 0.3807196863200844 0 EST 1.1885 - 81 + NaN NaN 149334.2 NaN 8072 2801 10871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10876 52.296 NaN 158640 35 0 11348 0.261 -1 GYEPESCFLL 10 53 607.7737648049499 1213.5329766766997 2 607.7733154296875 MULTI HCD FTMS 0 0 0 10871 44259.95703125 0.8246258014148379 -1 0.016300201416015625 5 Carbamidomethyl (C) _GYEPESC(Carbamidomethyl (C))FLL_ nc|ENSG00000106348|P20839-5|IMPDH1 14.838274106304384 0.3723198072575719 2 {I|L}{I|L} 2 -1 24.464 0 0 2.0159 0 0 969.3526478498062 0 969.3526478498062 0 17.47425010840047 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.0159 + + 28 NaN NaN 123358 NaN 8073 2801 10871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10877 52.299 NaN 163570 35 0 15889 0.261 + 23600 RPFNAHLPSG 10 62 548.2875667962614 1094.5605806593228 2 548.7872924804688 MULTI HCD FTMS 0 0 0 10871 41149.55078125 0.07947097780908048 -11 0.2722740173339844 6 Unmodified _RPFNAHLPSG_ REV__ENSG00000242732|ENST00000609883|RTL5 3.2813086475875832 0.45793521633868084 2 VD 2 -1 14.776 0 0 1.35 0 0 130.09695301045423 747.3496798150999 877.4466328255542 0 0 0 0 0 0 0 0.3807196863200844 0 VD 1.35 - 26 + NaN NaN 111176 NaN 8074 2801 10871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10879 52.304 NaN 283240 35 0 27336 0.327 + 23867 RSNLNRHSM 9 53 557.7795443397043 1113.5445357462086 2 557.7811889648438 MULTI HCD FTMS 0 0 0 10878 62190.0234375 0.04703469729366243 19 -0.47344970703125 1 Unmodified _RSNLNRHSM_ ENSG00000186026|ENST00000421176|ZNF284 10.073929032068715 0.27331982688540024 2 NT[R{M(Oxidation (M))|F}]VQN 7 7 29.64 0 0 2.6617 0 0 236.07846541435111 0 236.07846541435111 0 18.67046012758685 0 0 0 1.5114393726401687 0 0 0.3054621874040891 NT[R{M(Oxidation (M))|F}]VQN 2.6617 - 92 + NaN NaN 133984.8 NaN 8075 2802 10878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10880 52.309 NaN 184160 35 0 19023 0.261 + 17370 LYQHAVEYF 9 50 585.2848602119308 1168.5551674906615 2 585.285400390625 MULTI HCD FTMS 0 0 0 10878 69043.3046875 0.7778322196561096 -2 0.0391998291015625 2 Unmodified _LYQHAVEYF_ ENSG00000132612|ENST00000254950|VPS4A 22.736283301280096 0.1639198954644489 2 EY{M(Oxidation (M))|F} 3 6 45.445 0 0 3.889 0 0 711.3702137326521 0 711.3702137326521 0 24.47621246364342 0 0 0 1.5 0 0.4247425010840047 0 + EY{M(Oxidation (M))|F} 3.889 + + 34 + NaN NaN 125153.4 NaN 8076 2802 10878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10881 52.312 NaN 111210 35 0 9603.7 0.262 -1 0 53 500.1152168452719 NaN 0 500.1149597167969 PEAK HCD FTMS 0 0 0 10878 5072.43408203125 0.20162041299681052 1 -0.01294708251953125 3 NaN NaN 2 T 1 -1 5.4846 0 0 0.54944 0 0 463.9720585911313 430.17377649478755 894.1458350859189 0 0 0 0 0 0 0 0 0 T 0.54944 - 2 + NaN NaN 96473.3 NaN 8077 2802 10878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10883 52.317 NaN 1771400 35 0 137630 0.327 + 6667 FPNAIEHTL 9 109 521.2715994128109 1040.5286458924218 2 521.2718505859375 MULTI HCD FTMS 0 0 0 10882 963682 0.7082042292788796 5 -0.12454986572265625 1 Unmodified _FPNAIEHTL_ ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF;nc|ENSG00000130985|P22314-2|UBA1 157.7952019732125 5.857147217999733E-07 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}EHT{I|L} 9 0 + 93.64 0 0 8.9993 8.9993 90.094 0 0 0 2.7967359914568988 21.60470582662819 2.7967359914568988 3.034699549862708 0 2.385151878060192 1.6989700043360187 0.5796896906561032 0.7951140161145328 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}EHT{I|L};{M(Oxidation (M))|F}PNA{I|L}EHT{I|L};{M(Oxidation (M))|F}PGGA{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGA{I|L}EHT{I|L};{[QG]|[NA]}P{M(Oxidation (M))|F}{I|L}EHT{I|L};[{I|L}T]HE{I|L}ANP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}[HT]E{I|L};[NP]{M(Oxidation (M))|F}A{I|L}EHT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NA{I|L}[HT]{I|L}E;{[QG]|[NA]}P[TP]{I|L}ANP{M(Oxidation (M))|F} 8.9993;8.7077;7.8227;7.3502;7.2642;6.6844;6.4576;6.422;6.1217;6.0448 +;+;-;-;-;-;-;-;-;- + 3506 NaN NaN 375542.2 NaN 8078 2803 10882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10884 52.322 NaN 245840 35 0 34500 0.261 + 4253 EVHGMVTVEI 10 57 557.2823556584392 NaN 0 557.2822265625 PEAK HCD FTMS 0 0 0 10882 88648.296875 1 0 0 2 Unmodified _EVHGMVTVEI_ REV__CON__ENSEMBL:ENSBTAP00000007350;REV__CON__P01030 22.736283301280096 0.25846987392193327 2 EVV 3 -1 22.435 0 0 2.0165 0 0 131.0952897139951 651.2535494440061 782.3488391580013 0 0 0 0 0 0.9247425010840047 0 0 0 EVV 2.0165 - 50 + NaN NaN 143527.9 NaN 8079 2803 10882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10885 52.325 NaN 133020 35 0 7503.3 0.261 + 3337 EELGFRPEY 9 59 570.272297521519 1138.530042109838 2 570.7724609375 MULTI HCD FTMS 0 0 0 10882 37316.30078125 0.5510401438465145 -7 0.14389419555664062 3 Unmodified _EELGFRPEY_ ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion 6.2057823575117 0.30397260197431997 2 EE{I|L} 3 6 27.447 0 0 2.4108 0 0 0 764.3362655134657 764.3362655134657 12.993405494535821 0 0 0 0 0 2 0 0 + EE{I|L} 2.4108 + + 81 + NaN NaN 111966.4 NaN 8080 2803 10882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10886 52.329 NaN 92391 35 0 5119.1 0.261 + 4518 EYLDAIKKF 9 44 563.8109061130666 NaN 0 563.811279296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _EYLDAIKKF_ chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1;ENSG00000057149|ENST00000283752|SERPINB3;ENSG00000206073|ENST00000341074|SERPINB4;nc|ENSG00000057149|P29508-2|SERPINB3 12.240655878213236 0.2359303321180293 2 {I|L}D 2 7 10.969 0 0 0.97451 0 0 292.1047701345331 602.3651827447874 894.4699528793205 0 0 0 0 0 0 0 0 0 + {I|L}D 0.97451 + + 9 + NaN NaN 98003.7 NaN 8081 2803 10882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10887 52.332 NaN 57926 35 0 3662.3 0.261 + 12574 KTKEDVVRLGD 11 38 630.3506921099125 NaN 0 630.8330688476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KTKEDVVRLGD_ REV__ENSG00000133961|ENST00000555238|NUMB;REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF;REV__nc|ENSG00000133961|P49757-2|NUMB;REV__nc|ENSG00000133961|P49757-3|NUMB;REV__nc|ENSG00000133961|P49757-4|NUMB;REV__nc|ENSG00000133961|P49757-5|NUMB;REV__nc|ENSG00000133961|P49757-6|NUMB;REV__nc|ENSG00000133961|P49757-7|NUMB;REV__nc|ENSG00000133961|P49757-8|NUMB;REV__NUMB|p.E112Kfs*42|1|0.31|ENSG00000133961|chr14:73292847-73292850|TCTC/-|frameshift_variant 0.9622753412299311 0.33939044544643376 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98725 NaN 8082 2803 10882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10889 52.337 NaN 183130 35 0 22305 0.327 + 529 APDAKSFVL 9 54 474.2632437337994 946.5119345343988 2 474.2626037597656 MULTI HCD FTMS 0 0 0 10888 106189.453125 0.6380691571248321 5 -0.132843017578125 1 Unmodified _APDAKSFVL_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF 30.7034409873982 0.10802119112323902 2 [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 9 0 + 44.376 0 0 4.6884 4.6884 84.823 0 0 0 4.594465368295886 22.860527937172606 4.594465368295886 7.257724967479852 0 1.805462187404089 0 0 0 + + [PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]DKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DK[{M(Oxidation (M))|F}E]K{I|L};[DP]AKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AK[{M(Oxidation (M))|F}E]K{I|L} 4.6884;3.9216;3.8973;3.8421;3.1306;3.0753;3.0511;2.8409;2.2843;2.0499 +;-;-;-;-;-;-;-;-;- + 159 NaN NaN 110447.2 NaN 8083 2804 10888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10890 52.341 NaN 335380 35 0 39154 0.261 + 25391 SEIRYRKQPW 10 77 454.91403710303086 1361.7202819092927 3 454.9135437011719 MULTI HCD FTMS 0 0 0 10888 94200.5 0.6118835791305043 -4 0.07175064086914062 2 Unmodified _SEIRYRKQPW_ ENSG00000089351|ENST00000317991|GRAMD1A;ENST00000598118.1_1_19:35506495-35517042:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A 3.5870582119611467 0.4563168352879256 2 AG{I|L}RW 5 7 54.949 0 0 4.0352 0 0 760.3866684582116 0 760.3866684582116 0 50.96910013008056 0 0 0 2 0 0 0 AG{I|L}RW 4.0352 - 169 + NaN NaN 151971.6 NaN 8084 2804 10888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10891 52.345 NaN 67633 35 0 6187.5 0.261 + 15931 LPNVIVEVQDR 11 39 641.3617478429991 1280.708942752798 2 641.3626098632812 MULTI HCD FTMS 0 0 0 10888 27125.431640625 0.03036840744028137 17 -0.4408988952636719 3 Unmodified _LPNVIVEVQDR_ ENSG00000135678|ENST00000551568|CPM 4.189502756095605 0.4005469306127019 2 {I|L}PN 3 8 26.198 0 0 2.0456 0 0 0 953.5065509980361 953.5065509980361 26.197887582883936 0 0 0 0 0 0 0 0 + {I|L}PN 2.0456 + + 3 + NaN NaN 112716.2 NaN 8085 2804 10888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10892 52.348 NaN 164360 35 0 6389.2 0.264 + 58 AAYAEATSSL 10 49 492.23663898343904 982.4587250336781 2 492.2364501953125 MULTI HCD FTMS 0 0 0 10888 36191.4765625 0.5106756636538423 -2 0.032550811767578125 4 Unmodified _AAYAEATSSL_ sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1 19.256988751693697 0.33098864134661865 2 S{I|L} 2 8 25.445 0 0 2.59 0 0 764.3319339499046 0 764.3319339499046 0 19.960762528683702 0 0 0 0.5 0 0.4247425010840047 0 + S{I|L} 2.59 + + 7 NaN NaN 106431.6 NaN 8086 2804 10888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10893 52.352 NaN 201900 35 0 23550 0.261 -1 0 42 416.21269764249956 415.2054211758996 1 416.2436218261719 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 {I|L} 1 -1 15.485 0 0 3.7294 0 0 284.1108452255074 0 284.1108452255074 0 12.720340221751378 0 0 0 0 0 0 0 {I|L} 3.7294 - 3 + NaN NaN 116295.4 NaN 8087 2804 10888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10895 52.357 NaN 684040 35 0 168370 0.327 + 31373 VYADQPHIF 9 59 545.2719907098738 1088.5294284865474 2 545.2717895507812 MULTI HCD FTMS 0 0 0 10894 321053.03125 0.8600436497163422 2 -0.0557403564453125 1 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 114.6490535036381 0.0021834323520089267 2 VYADQPH{I|L}{M(Oxidation (M))|F} 9 0 + 120.62 0 0 11.081 11.081 96.587 0 0 0 113.62572235417012 14.973024840566467 14.973024840566467 14.407365922476814 0 2.8494850021680094 2 0.3807196863200844 0.6989700043360187 + + VYADQPH{I|L}{M(Oxidation (M))|F};VY[H{I|L}]QDAP{M(Oxidation (M))|F};VYAD[AG]PH{I|L}{M(Oxidation (M))|F};VYADQ[H{I|L}]P{M(Oxidation (M))|F};[YV]ADQ[H{I|L}]P{M(Oxidation (M))|F};VY[H{I|L}]DQAP{M(Oxidation (M))|F};VY[H{I|L}][AG]DAP{M(Oxidation (M))|F};[YV][H{I|L}]QDAP{M(Oxidation (M))|F};VYAD[AG][H{I|L}]P{M(Oxidation (M))|F};[YV]AQD[H{I|L}]P{M(Oxidation (M))|F} 11.081;9.757;9.5925;9.4073;8.5184;8.468;8.2403;8.1687;7.9192;7.2294 +;-;-;-;-;-;-;-;-;- + 574 + NaN NaN 191081.4 NaN 8088 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10896 52.361 NaN 370680 35 0 44863 0.261 -1 LDKPDSFM 8 66 484.72326006371924 NaN 0 484.70672607421875 PEAK HCD FTMS 0 0 0 10894 19786.556640625 1 0 0 2 Oxidation (M) _LDKPDSFM(Oxidation (M))_ ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant 34.10243960390752 0.3660718511026519 2 S{M(Oxidation (M))|F}[MD]K 5 -1 16.268 0 0 1.6816 0 0 131.1306361941701 225.05105005435783 356.18168624852797 0 0 0 0 0 0 0 0.7059771852360797 0 S{M(Oxidation (M))|F}[MD]K 1.6816 - 51 + NaN NaN 140116 NaN 8089 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10897 52.365 NaN 155880 35 0 19494 0.261 + 530 APDAKSFVL 9 48 474.2632437337994 946.5119345343988 2 474.2629699707031 MULTI HCD FTMS 0 0 0 10894 99554.71875 0.598202491972879 6 -0.17229843139648438 3 Unmodified _APDAKSFVL_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF 21.590151480376914 0.17382222009858564 2 [PA]DAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 9 2 + 29.9 0 0 3.1589 3.1589 60.199 0 0 0 0.9729593083313439 20.056584229283843 0.9729593083313439 0 0 0.8807196863200843 0 0 0 [PA]DAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]DKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[PA]DKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[PA]DAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AKA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AKAV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]AAK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L};[DP]AAKV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3.1589;3.1589;3.1589;3.1589;2.9911;2.9911;2.9911;2.9911 -;-;-;+;-;-;-;- + 115 NaN NaN 101875.7 NaN 8090 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10898 52.368 NaN 302950 35 0 20791 0.261 + 33678 YKLLHPDL 8 75 499.7869441109673 997.5593352887346 2 499.7689208984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YKLLHPDL_ REV__ENST00000511924.1_1_X:118513713-118514064:+|nuORF 8.593279151180031 0.5292430274356741 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AA{I|L} 5 -1 34.208 0 0 3.4292 0 0 0 495.25212028312836 495.25212028312836 6.578540474867715 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AA{I|L} 3.4292 - 253 NaN NaN 142015 NaN 8091 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10899 52.371 NaN 124460 35 0 9357.3 0.261 + 32731 WPVGGDSRF 9 44 510.74864528041394 1019.4827376276279 2 510.7483215332031 MULTI HCD FTMS 0 0 0 10894 4862.50927734375 0.04501144068734306 13 -0.3559303283691406 5 Unmodified _WPVGGDSRF_ ENSG00000141738|ENST00000309156|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 14.405379775768559 0.2358970535022398 2 WPVC(Carbamidomethyl (C)) 4 6 27.907 0 0 2.7374 0 0 0 474.23749719791255 474.23749719791255 16.670175336041453 0 0 0 0 0.3494850021680094 0 0 0 WPVC(Carbamidomethyl (C)) 2.7374 - 37 + NaN NaN 108945.5 NaN 8092 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10900 52.374 NaN 272520 35 0 76952 0.262 -1 DFVCKQGYDL 10 50 415.52424638448065 1243.550909753642 3 415.52471923828125 MULTI HCD FTMS 0 0 0 10894 27128.189453125 0.6113081618529755 -3 0.052181243896484375 6 Carbamidomethyl (C) _DFVC(Carbamidomethyl (C))KQGYDL_ ENSG00000143278|ENST00000367412|F13B 5.047519993296601 0.4485863789024576 2 Q{I|L} 2 -1 24.776 0 0 1.9924 0 0 984.3956850590858 0 984.3956850590858 0 10.172203223519531 0 0 0 0.3807196863200844 0 0 0 Q{I|L} 1.9924 - 19 NaN NaN 120573.9 NaN 8093 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10901 52.378 NaN 187410 35 0 12486 0.261 -1 MCFFCFNY 8 48 623.7235524658705 NaN 0 623.7236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))C(Carbamidomethyl (C))FFC(Carbamidomethyl (C))FNY_ ENST00000469354.1_1_2:222285094-222285178:-|nuORF 0.7936320650641473 0.38822285293237185 2 QA 2 -1 15.217 0 0 1.2218 0 0 131.97728792062986 911.3403414361936 1043.3176293568235 0 0 0 0 0 0 0 0 0.4247425010840047 QA 1.2218 - 11 + NaN NaN 138174.4 NaN 8094 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10902 52.381 NaN 101720 35 0 19015 0.261 + -1 PMYKKTPCN 9 44 577.7707972272068 NaN 0 577.7714233398438 PEAK HCD FTMS 0 0 0 10894 13482.4345703125 0.2536462486589243 10 -0.2872657775878906 8 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))YKKTPC(Carbamidomethyl (C))N_ REV__ENSG00000078674|ENST00000325083|PCM1;REV__ENST00000518762.1_1_8:17817875-17822118:+|nuORF;REV__nc|ENSG00000078674|Q15154-2|PCM1;REV__nc|ENSG00000078674|Q15154-4|PCM1;REV__nc|ENSG00000078674|Q15154-5|PCM1 1.4819007175156935 0.28806575819904134 2 S 1 -1 6.9897 0 0 0.60594 0 0 205.05197333659186 858.4146093367191 1063.466582673311 0 0 0 0 0 0 0 0 0 S 0.60594 - 6 + NaN NaN 104440.7 NaN 8095 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10903 52.384 NaN 145280 35 0 16756 0.261 + -1 ETESIMQTF 9 53 551.2422035660203 1100.4698541988405 2 551.2431030273438 MULTI HCD FTMS 0 0 0 10894 16184.052734375 0.29422108791677565 -10 0.20608901977539062 9 Oxidation (M) _ETESIM(Oxidation (M))QTF_ REV__ENSG00000143971|ENST00000272342|ETAA1 14.838274106304384 0.23215694253501695 2 T{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.7058 0 0 834.3430307206008 0 834.3430307206008 0 22.78659694992122 0 0 0 0.8807196863200843 0 0 0 T{M(Oxidation (M))|F} 2.7058 + + 28 NaN NaN 120102.3 NaN 8096 2805 10894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10905 52.389 NaN 968030 35 0 206870 0.327 -1 VFERYMVN 8 66 537.256271768748 1072.4979906042959 2 537.2689819335938 MULTI HCD FTMS 0 0 0 10904 25105.578125 1 0 0 1 Oxidation (M) _VFERYM(Oxidation (M))VN_ ENSG00000173156|ENST00000308831|RHOD;ENST00000533360.2_1_11:66824373-66837783:+|nuORF 16.942295170755138 0.46913822049235215 2 PPM 3 -1 17.703 0 0 1.6506 0 0 729.3356190412125 0 729.3356190412125 0 -0.25576261223690366 -0.25576261223690366 0 0 0 0 0 0 PPM 1.6506 - 26 NaN NaN 252445.9 NaN 8097 2806 10904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10906 52.394 NaN 308080 35 0 39032 0.261 + 18005 MLHVLFVL 8 65 486.2921344371251 970.5697159410503 2 486.77947998046875 MULTI HCD FTMS 0 0 0 10904 19985.296875 1 0 0 2 Unmodified _MLHVLFVL_ REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF 17.086550045450526 0.4680768486079041 2 P{I|L}NPK 5 -1 27.167 0 0 2.7991 0 0 403.236131736525 0 403.236131736525 0 -0.8530288399813202 -0.8530288399813202 0 0 0 0 0 0 P{I|L}NPK 2.7991 - 147 NaN NaN 135330.4 NaN 8098 2806 10904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10907 52.397 NaN 926080 35 0 199190 0.261 + 29956 VFHSPSSFQT 10 80 568.7722322171772 1135.5299115011544 2 568.7730712890625 MULTI HCD FTMS 0 0 0 10904 315966.65625 0.18936747137106705 -5 0.1079254150390625 3 Unmodified _VFHSPSSFQT_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 17.11289562659939 0.35104376501799556 2 SVSTS{M(Oxidation (M))|F}K 7 7 81.578 0 0 7.1841 0 0 208.08474929023595 188.03583258973427 396.12058187997025 0 0 0 0 0 3.7302046884880937 0 1.3737125054200234 0.5 SVSTS{M(Oxidation (M))|F}K 7.1841 - 938 NaN NaN 231790.9 NaN 8099 2806 10904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10908 52.401 NaN 180210 35 0 16927 0.261 -1 TPMFREYSL 9 64 580.2760797331745 1158.5376065331488 2 580.2765502929688 MULTI HCD FTMS 0 0 0 10904 98788.5625 0.678534671070269 2 -0.052471160888671875 4 Oxidation (M) _TPM(Oxidation (M))FREYSL_ ENSG00000182199|ENST00000328923|SHMT2;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-2|SHMT2;nc|ENSG00000182199|P34897-3|SHMT2 27.088373467376528 0.12631880205116225 2 [TP]MYREYS{I|L} 9 -1 + 40.288 0 0 3.4775 3.4775 82.772 0 0 0 5.604028237526748 5.604028237526748 5.604028237526748 5.604028237526748 0 1.4247425010840047 0 0 0 [TP]MYREYS{I|L};TP{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VP][HD]S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YES{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WP] 3.4775;2.9938;1.7567 -;-;- 161 NaN NaN 125319.7 NaN 8100 2806 10904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10909 52.404 NaN 145710 35 0 17793 0.261 + 14587 LFLNPCVPF 9 60 525.27610783099 NaN 0 525.2759399414062 PEAK HCD FTMS 0 0 0 10904 24025.34375 0.6351113974450309 2 -0.052471160888671875 5 Unmodified _LFLNPCVPF_ ENST00000233809.8_2_2:217528903-217529134:+|nuORF 7.910154910731844 0.25691533546754686 2 M 1 9 6.2814 0 0 0.59907 0 0 655.3633596055362 259.1125582330688 914.475917838605 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.59907 - 13 + NaN NaN 106570.8 NaN 8101 2806 10904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10910 52.407 NaN 139340 35 0 7846.7 0.261 -1 EDCHCPGM 8 55 511.1624726747926 1020.3103924163852 2 511.1632080078125 MULTI HCD FTMS 0 0 0 10904 14210.2587890625 0.3029990214946345 3 -0.0803680419921875 6 2 Carbamidomethyl (C),Oxidation (M) _EDC(Carbamidomethyl (C))HC(Carbamidomethyl (C))PGM(Oxidation (M))_ ENST00000245222.8_1_19:49129571-49131056:+|nuORF 0.7936320650641473 0.540814922690045 2 ST{I|L} 3 -1 10.177 0 0 0.99747 0 0 129.82639691032892 586.2971285455686 716.1235254558976 0 0 0 0 0 0 0 0 0 ST{I|L} 0.99747 - 32 + NaN NaN 112498.6 NaN 8102 2806 10904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10912 52.412 NaN 675030 35 0 126330 0.327 + 45 AATEQEISL 9 66 481.2456846263114 960.4768163194228 2 481.24542236328125 MULTI HCD FTMS 0 0 0 10911 365689.375 0.7910499731867746 1 -0.029575347900390625 1 Unmodified _AATEQEISL_ BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3 71.70789743142352 0.008535567138151097 2 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L} 9 4 + 82.374 0 0 8.5764 8.5764 92.869 0 0 0 18.445984148897807 74.65395242911129 18.445984148897807 9.208187539523749 0 1.9247425010840047 1.6989700043360187 1.5044321917401078 0 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L};{[TV]|[{I|L}S]}[DG][AG]E{I|L}S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EQE{I|L}S{I|L};AATEQE{I|L}S{I|L};{[TV]|[{I|L}S]}{[CP]|[EA]}[DN]{I|L}S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E[AG]E{I|L}S{I|L};AATE[AG]E{I|L}S{I|L} 8.5764;7.6176;5.9006;5.7649;5.3253;4.9363;4.8062 -;-;-;+;-;-;- + 111 NaN NaN 179950.6 NaN 8103 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10913 52.417 NaN 580200 35 0 142730 0.261 + -1 EMLDCLLEM 9 72 593.2453920307562 1184.4762311283123 2 593.2456665039062 MULTI HCD FTMS 0 0 0 10911 331008 0.4781013911547603 6 -0.17235183715820312 2 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 2 [{I|L}V]{I|L}DE 5 -1 56.95 0 0 4.8081 0 0 0 612.1467968924359 612.1467968924359 20.012262311882765 0 0 0 0 1.3494850021680094 1.6989700043360187 0.4247425010840047 0 [{I|L}V]{I|L}DE 4.8081 - 72 + NaN NaN 182555 NaN 8104 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10914 52.42 NaN 651030 35 0 87335 0.262 -1 VMAPRTVLL 9 81 508.3021521785982 1014.5897514239964 2 508.3020935058594 MULTI HCD FTMS 0 0 0 10911 270426.3125 0.713646047594755 -2 0.0557403564453125 3 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 27.628801355627647 0.12213550946336599 2 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L} 9 -1 + 43.134 0 0 4.2513 4.2513 86.9 0 0 0 6.45119965945284 14.60164323409387 6.45119965945284 10.268024924119665 0 1.3494850021680094 0 0.3494850021680094 0 [{M(Oxidation (M))|F}V]A[RP][{I|L}T]V{I|L};[{M(Oxidation (M))|F}V]A[RP]V[{I|L}T]{I|L};[{M(Oxidation (M))|F}V]A[RP][{I|L}T]{I|L}V 4.2513;3.2393;3.218 -;-;- 74 NaN NaN 201079.9 NaN 8105 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10915 52.424 NaN 393680 35 0 60251 0.261 + 9887 IANQDPIAV 9 54 470.7585657142765 939.502578495353 2 470.7584533691406 MULTI HCD FTMS 0 0 0 10911 261071.265625 0.8603924221684601 -2 0.0557403564453125 4 Unmodified _IANQDPIAV_ ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-2|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-7|NRG1 32.78568957990786 0.09846250359632436 2 D[{I|L}P]AV 5 4 34.961 0 0 3.7212 0 0 426.2223455340601 0 426.2223455340601 0 19.47621246364342 0 0 0 1.4247425010840047 0 0 0 + D[{I|L}P]AV 3.7212 + + 47 NaN NaN 140397.8 NaN 8106 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10916 52.427 NaN 111550 35 0 6401.4 0.261 -1 YPDRIMNTF 9 52 586.77467895435 NaN 0 586.7738037109375 PEAK HCD FTMS 0 0 0 10911 35585.06640625 0.5279292416096313 -26 0.6583023071289062 5 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 4.897010918128616 0.2715166107592903 2 N{M(Oxidation (M))|F}V 3 -1 11.198 0 0 0.95583 0 0 266.1309486295998 542.2352999322874 808.3662485618872 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}V 0.95583 - 20 + NaN NaN 112497.8 NaN 8107 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10917 52.43 NaN 204920 35 0 71206 0.263 -1 NYNIYMYKLL 10 43 450.89809741107604 NaN 0 450.8979187011719 PEAK HCD FTMS 0 0 0 10911 35097.4453125 0.47113747795577227 -4 0.09497451782226562 6 Oxidation (M) _NYNIYM(Oxidation (M))YKLL_ tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1 3.3196427980023873 0.3373431348853355 2 DW 2 -1 5.5732 0 0 0.61939 0 0 467.57575307234896 128.07149683170158 595.6472499040506 0 0 0 0 0 0 0 0 0 DW 0.61939 - 4 + NaN NaN 125292.5 NaN 8108 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10918 52.434 NaN 134150 35 0 8580.6 0.261 -1 YANVACAQLGF 11 41 607.2869238669952 1212.5592948007902 2 607.2876586914062 MULTI HCD FTMS 0 0 0 10911 42512.05078125 0.8029493679562181 1 -0.029575347900390625 7 Carbamidomethyl (C) _YANVAC(Carbamidomethyl (C))AQLGF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 4.897010918128616 0.3974440401582579 2 N{[ES]|[DT]|[{I|L}C]} 3 -1 12.447 0 0 1.0265 0 0 864.4170607547333 0 864.4170607547333 0 4.9730248405664685 0 0 0 0.5 0 0 0 N{[ES]|[DT]|[{I|L}C]} 1.0265 - 8 NaN NaN 109351.3 NaN 8109 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10919 52.437 NaN 153180 35 0 12667 0.261 -1 EAPRATSQML 10 50 560.2782672677728 1118.5419816023455 2 560.2776489257812 MULTI HCD FTMS 0 0 0 10911 25381.708984375 0.6765833968503872 -3 0.07537078857421875 8 Oxidation (M) _EAPRATSQM(Oxidation (M))L_ LBP|p.A240S|1|0.12|ENSG00000129988|chr20:38364040-38364040|G/T|missense_variant 8.155526934196011 0.43213520406898465 2 Y{M(Oxidation (M))|F}{I|L} 3 -1 27.307 0 0 2.4413 0 0 677.3497181623062 0 677.3497181623062 0 27.307131330965717 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F}{I|L} 2.4413 - 14 NaN NaN 107367.9 NaN 8110 2807 10911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10921 52.442 NaN 1911700 35 0 359570 0.327 + 15496 LPDMVVSHL 9 94 513.768193570899 NaN 0 513.7681274414062 PEAK HCD FTMS 0 0 0 10920 932922.875 0.761209129308342 -6 0.1374969482421875 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 136.33342141710068 1.3858295154724892E-13 2 PD{M(Oxidation (M))|F}VVS 6 3 65.137 0 0 6.3516 0 0 113.08512460894447 265.1303804986938 378.21550510763825 0 0 0 0 0 2.4604093769761874 0 1.2396518287104437 0 + PD{M(Oxidation (M))|F}VVS 6.3516 + + 1137 + NaN NaN 393555.8 NaN 8111 2808 10920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10922 52.446 NaN 671320 35 0 72821 0.261 + 35068 YTSRIDEVL 9 82 548.2875667962614 1094.5605806593228 2 548.78759765625 MULTI HCD FTMS 0 0 0 10920 302189.75 0.5836106217549348 -4 0.10494613647460938 2 Unmodified _YTSRIDEVL_ ENSG00000145990|ENST00000379287|GFOD1 14.838274106304384 0.23215694253501695 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KQ]{M(Oxidation (M))|F}DV 8 6 50.411 0 0 4.6056 0 0 0 127.07299569514022 127.07299569514022 19.037110475244354 0 0 0 0 0 1.6989700043360187 0.9731975075880328 0.3054621874040891 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KQ]{M(Oxidation (M))|F}DV 4.6056 - 1072 NaN NaN 190369 NaN 8112 2808 10920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10923 52.45 NaN 360900 35 0 39709 0.261 -1 IPHMDIEAL 9 67 527.7655620720968 NaN 0 527.765625 PEAK HCD FTMS 0 0 0 10920 176302.09375 0.48280618175584944 18 -0.4604606628417969 3 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 26.88365393820708 0.14119366324382274 2 {I|L}AE{[YD]|[{M(Oxidation (M))|F}M]}E 6 -1 33.778 0 0 3.2062 0 0 131.0947561312583 199.1087587945922 330.2035149258505 0 0 0 0 0 0.9247425010840047 0 1.2134679910804405 0 {I|L}AE{[YD]|[{M(Oxidation (M))|F}M]}E 3.2062 - 68 + NaN NaN 148089.1 NaN 8113 2808 10920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10924 52.453 NaN 549540 35 0 101980 0.261 -1 GDFRYTTTMG 10 71 582.7523560190542 1163.4901591049083 2 582.7699584960938 MULTI HCD FTMS 0 0 0 10920 28354.79296875 0.5235916516770949 -2 0.052471160888671875 4 Oxidation (M) _GDFRYTTTM(Oxidation (M))G_ ENSG00000159403|ENST00000647956|C1R;nc|ENSG00000159403|P00736|C1R 6.2057823575117 0.44245551207394906 2 [YR]{M(Oxidation (M))|F}STSVS[DC] 10 -1 + 37.197 0 0 3.1971 3.1971 87.4 0 0 0 0.588322603408848 0.33764443725672777 0.33764443725672777 17.086294715930777 0 0 0 0.3252574989159953 0 [YR]{M(Oxidation (M))|F}STSVS[DC];[YN][Y{I|L}]TSCP{[CT]|[{M(Oxidation (M))|F}G]};[{M(Oxidation (M))|F}V][YG]STSCP{[CT]|[{M(Oxidation (M))|F}G]};[YR]C[YR]VS[DC];[YR]{M(Oxidation (M))|F}ST{[CP]|[EA]}S{[CT]|[{M(Oxidation (M))|F}G]};[YR]{M(Oxidation (M))|F}ST{[WT]|[RM]}{[CT]|[{M(Oxidation (M))|F}G]};[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}CP{[CT]|[{M(Oxidation (M))|F}G]};[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}W[DC];[{M(Oxidation (M))|F}V][YG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS[DC];[YR]{M(Oxidation (M))|F}S[C(Carbamidomethyl (C))M]P{[CT]|[{M(Oxidation (M))|F}G]} 3.1971;1.7285;1.6249;1.5415;1.2609;1.1095;0.85082;0.70516;0.65627;0.59209 -;-;-;-;-;-;-;-;-;- 698 NaN NaN 169879.4 NaN 8114 2808 10920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10925 52.456 NaN 141140 35 0 7624 0.261 + 254 AFHQQNWS 8 51 509.2301066482175 1016.445660363235 2 510.7485046386719 MULTI HCD FTMS 0 0 0 10920 13511.4912109375 0.5917268133144026 -2 0.052471160888671875 5 Unmodified _AFHQQNWS_ REV__ENSG00000155833|ENST00000374798|CYLC2 2.577480529830294 0.5381683276125971 2 SY 2 -1 15.217 0 0 1.497 0 0 129.08954159474462 634.2601412408811 763.3496828356258 0 0 0 0 0 0 0 0.4247425010840047 0 SY 1.497 - 9 + NaN NaN 117749.3 NaN 8115 2808 10920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10926 52.465 NaN 125020 35 0 22650 0.262 + 19248 NLADPQAL 8 53 421.22482299275197 840.435093052304 2 421.2245788574219 MULTI HCD FTMS 0 0 0 10920 52777.015625 0.9784059234515531 -2 0.052471160888671875 6 Unmodified _NLADPQAL_ REV__ENSG00000181374|ENST00000225844|CCL13 52.268347100219714 0.11372384022409306 2 C(Carbamidomethyl (C))A{I|L} 3 -1 32.435 0 0 3.8593 0 0 478.2808399778883 0 478.2808399778883 0 -0.11316845856768509 -0.11316845856768509 0 0 0.9247425010840047 0 0 0 C(Carbamidomethyl (C))A{I|L} 3.8593 - 68 + NaN NaN 107136.6 NaN 8116 2808 10920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10928 52.47 NaN 648350 35 0 34889 0.327 + -1 MLHHHHLT 8 85 521.2574134099962 NaN 0 521.2718505859375 PEAK HCD FTMS 0 0 0 10927 14001.244140625 0.6154781929902164 -9 0.20459365844726562 1 Oxidation (M) _M(Oxidation (M))LHHHHLT_ REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF 19.438996006549623 0.38500361301801034 2 PNA{I|L}E 5 -1 31.793 0 0 3.0556 0 0 147.03685894147787 366.17804895572505 513.2149078972029 0 0 0 0 0 0 0 2.4247425010840047 0 PNA{I|L}E 3.0556 - 677 + NaN NaN 185351 NaN 8117 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10929 52.474 NaN 335170 35 0 69454 0.261 + 725 AQRREADSR 9 68 544.7803211746035 1087.546089416007 2 545.2718505859375 MULTI HCD FTMS 0 0 0 10927 13404.5146484375 1 0 0 2 Unmodified _AQRREADSR_ REV__ENSG00000135476|ENST00000257934|ESPL1 19.256988751693697 0.19398022840297344 2 [YV][H{I|L}]QDA{[QD]|[EN]|[WG]|[KD]|[RS]} 9 -1 + 48.688 0 0 4.4769 4.4769 82.302 0 0 0 0.7501244534919493 27.517346757967545 0.7501244534919493 1.703103093438969 0 0 2 0.3054621874040891 0.25 [YV][H{I|L}]QDA{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]ADQ[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}]QW{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}][AG]DA{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]AD[AG][H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}][AG]W{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[W{I|L}]{M(Oxidation (M))|F};[YV][WQ][H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YT][PS]Q[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[W{I|L}]{M(Oxidation (M))|F} 4.4769;4.3203;3.6003;3.4003;3.1235;2.5188;2.3571;2.2732;2.1575;1.6416 -;-;-;-;-;-;-;-;-;- 539 NaN NaN 142075.2 NaN 8118 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10930 52.478 NaN 449720 35 0 68644 0.261 + 9649 HVAYDSTVNY 10 76 584.7670745769749 1167.5195962207497 2 584.7673950195312 MULTI HCD FTMS 0 0 0 10927 227566.484375 0.8483986900729887 -3 0.0803680419921875 3 Unmodified _HVAYDSTVNY_ REV__ENSG00000052126|ENST00000429027|PLEKHA5;REV__ENST00000539256.5_1_12:19282733-19418734:+|nuORF;REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0|PLEKHA5 9.38312468134398 0.42334543440173333 2 [HA]SVS 5 -1 44.838 0 0 3.8404 0 0 0 683.2798555963499 683.2798555963499 26.025436162722624 0 0 0 0 1.7134679910804405 0 0.6989700043360187 0 [HA]SVS 3.8404 - 406 + NaN NaN 149777.4 NaN 8119 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10931 52.481 NaN 148940 35 0 9664.8 0.261 -1 GYEPESCFLL 10 51 607.7737648049499 1213.5329766766997 2 607.7733154296875 MULTI HCD FTMS 0 0 0 10927 28335.5390625 0.5279312989716112 7 -0.20360946655273438 4 Carbamidomethyl (C) _GYEPESC(Carbamidomethyl (C))FLL_ nc|ENSG00000106348|P20839-5|IMPDH1 14.838274106304384 0.3723198072575719 2 {I|L}{I|L} 2 -1 18.188 0 0 1.4987 0 0 969.3547230451187 0 969.3547230451187 0 10.740312677277187 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.4987 + + 6 NaN NaN 104915.2 NaN 8120 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10932 52.484 NaN 146220 35 0 9574.7 0.261 -1 KWLFRMMS 8 53 557.7795443397043 1113.5445357462086 2 557.7814331054688 MULTI HCD FTMS 0 0 0 10927 47348.46484375 0.03580993522994118 26 -0.6254081726074219 5 Oxidation (M) _KWLFRM(Oxidation (M))MS_ ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 4.75600775471527 0.5349361699807423 2 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 24.253 0 0 2.178 0 0 662.3749350588805 0 662.3749350588805 0 13.283409326844264 0 0 0 0.4247425010840047 0 0 0.3807196863200844 TN{[MS]|[{M(Oxidation (M))|F}A]} 2.178 - 33 NaN NaN 108513.7 NaN 8121 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10933 52.488 NaN 140810 35 0 7110 0.261 + 11380 IYNSFHKLR 9 54 589.3267663889518 1176.6389798447035 2 589.3267211914062 MULTI HCD FTMS 0 0 0 10927 40923.671875 0.2685327936529386 7 -0.20360946655273438 6 Unmodified _IYNSFHKLR_ ENSG00000106266|ENST00000222990|SNX8 10.073929032068715 0.27331982688540024 2 [Y{I|L}]N 3 6 37.447 0 0 3.1826 0 0 0 783.4269491652691 783.4269491652691 30.368931070804592 0 0 0 0 1 1.6989700043360187 0 0 + [Y{I|L}]N 3.1826 + + 24 NaN NaN 106821.1 NaN 8122 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10934 52.491 NaN 125260 35 0 7438 0.261 -1 0 43 600.4996847667021 NaN 0 600.7625732421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 A 1 -1 5.4846 0 0 0.45743 0 0 131.57399349348253 993.3551729791624 1124.929166472645 0 0 0 0 0 0 0 0 0 A 0.45743 - 2 + NaN NaN 112772.2 NaN 8123 2809 10927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10936 52.496 NaN 572670 35 0 89421 0.327 + 19733 NYATRIVTL 9 71 525.8007217462326 1049.5868905592652 2 525.8007202148438 MULTI HCD FTMS 0 0 0 10935 282221.28125 0.9941238133723479 -1 0.02620697021484375 1 Unmodified _NYATRIVTL_ BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 100.7086487251713 0.004245359191255521 2 [YN]ATR{I|L}VT{I|L} 9 0 + 104.06 0 0 9.914 9.914 99.427 0 0 0 16.637867533881362 16.478174818886373 16.478174818886373 104.05607390370156 0 2.6549471895720984 1.6989700043360187 0.3054621874040891 1.0629529932484498 + + [YN]ATR{I|L}VT{I|L} 9.914 + + 265 NaN NaN 177965.4 NaN 8124 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10937 52.5 NaN 269220 35 0 34911 0.261 + 4281 EVKMDAEF 8 56 484.7227432932674 NaN 0 484.706787109375 PEAK HCD FTMS 0 0 0 10935 13459.146484375 0.523767875805195 -2 0.054103851318359375 2 Unmodified _EVKMDAEF_ ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP 24.67388899826682 0.38182156912090326 2 S{M(Oxidation (M))|F} 2 7 13.271 0 0 1.3718 0 0 131.128585423424 599.2146700494749 730.3432554728988 0 0 0 0 0 0 0 0.3807196863200844 0 S{M(Oxidation (M))|F} 1.3718 - 39 + NaN NaN 126655.9 NaN 8125 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10938 52.504 NaN 275420 35 0 48190 0.261 + 31541 VYGNVARYF 9 56 544.7803211746035 1087.546089416007 2 545.2720947265625 MULTI HCD FTMS 0 0 0 10935 6842.96484375 0.5104970245638585 1 -0.032878875732421875 3 Unmodified _VYGNVARYF_ ENSG00000127337|ENST00000247843|YEATS4;ENST00000552949.1_1_12:69753653-69756720:+|nuORF 8.593279151180031 0.2858735984551981 2 [YV]ADQ[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]} 9 7 + 43.134 0 0 3.9661 3.9661 60.914 0 0 0 1.9872495076921837 23.6696871556164 1.9872495076921837 0 0 0 1.6989700043360187 0 0 [YV]ADQ[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}]QDA{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}]QW{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}][AG]DA{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]AD[AG][H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]AQD[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YV][H{I|L}][AG]W{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]A[AG]D[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[KP]H[YT]QAP{M(Oxidation (M))|F};[YT][PS]Q[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]} 3.9661;3.9661;3.3705;3.1194;3.1194;3.0887;2.5188;2.242;2.1434;1.8033 -;-;-;-;-;-;-;-;-;- 658 NaN NaN 120878 NaN 8126 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10939 52.507 NaN 411410 35 0 51829 0.262 + 22233 QNILNGAKYRW 11 65 454.91403710303086 1361.7202819092927 3 455.2484436035156 MULTI HCD FTMS 0 0 0 10935 129528.734375 0.8144574807112779 3 -0.08867263793945312 4 Unmodified _QNILNGAKYRW_ REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF 4.406150317652783 0.39959678800402487 2 AG{I|L}RW 5 -1 57.959 0 0 4.2563 0 0 760.3884372458801 0 760.3884372458801 0 45.96910013008056 0 0 0 2 0 0 0 AG{I|L}RW 4.2563 - 197 + NaN NaN 159574.3 NaN 8127 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10940 52.511 NaN 209040 35 0 10794 0.261 + 33495 YIDALHTDL 9 66 530.768925257864 1059.523297582528 2 530.7686767578125 MULTI HCD FTMS 0 0 0 10935 33717.8515625 0.0953118525257563 14 -0.360595703125 5 Unmodified _YIDALHTDL_ REV__ENSG00000144130|ENST00000688554|NT5DC4;REV__ENST00000497526.1_1_2:113482708-113488660:+|nuORF;REV__nc|ENSG00000144130|Q86YG4|NT5DC4 7.910154910731844 0.2910521888787154 2 [Y{I|L}]{I|L} 3 -1 29.437 0 0 2.7783 0 0 0 667.2696016900999 667.2696016900999 14.488474775526186 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.7783 - 92 + NaN NaN 113079 NaN 8128 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10941 52.514 NaN 126220 35 0 10088 0.261 -1 KWLFRMMS 8 54 557.7795443397043 1113.5445357462086 2 557.7802734375 MULTI HCD FTMS 0 0 0 10935 53252.23828125 0.04027499539834976 27 -0.6383056640625 6 Oxidation (M) _KWLFRM(Oxidation (M))MS_ ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 7.910154910731844 0.5302565402355366 2 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 23.94 0 0 2.1499 0 0 662.3742042904945 0 662.3742042904945 0 12.971062485323515 0 0 0 0.7742275032520141 0 0 0 TN{[MS]|[{M(Oxidation (M))|F}A]} 2.1499 - 60 NaN NaN 113000.9 NaN 8129 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10942 52.517 NaN 134950 35 0 6073.3 0.262 + -1 VFNMEEASCQF 11 58 440.8459408364524 1319.5159931095573 3 440.845947265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _VFNM(Oxidation (M))EEASCQF_ REV__ENSG00000104413|ENST00000433389|ESRP1;REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1;REV__nc|ENSG00000104413|Q6NXG1-3|ESRP1;REV__nc|ENSG00000104413|Q6NXG1-4|ESRP1;REV__nc|ENSG00000104413|Q6NXG1-5|ESRP1 1.214830529360525 0.41359283248740725 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2876 0 0 1154.4372100058447 0 1154.4372100058447 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2876 + + 16 + NaN NaN 102542 NaN 8130 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10943 52.521 NaN 103630 35 0 5305.9 0.261 + -1 AAYCLWIS 8 38 492.23663898343904 982.4587250336781 2 492.2362060546875 MULTI HCD FTMS 0 0 0 10935 34352.25390625 0.4847235240950806 4 -0.11824798583984375 8 Carbamidomethyl (C) _AAYC(Carbamidomethyl (C))LWIS_ REV__ENSG00000173638|ENST00000311124|SLC19A1;REV__nc|ENSG00000173638|P41440-2|SLC19A1;REV__nc|ENSG00000173638|P41440-3|SLC19A1 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 109732.9 NaN 8131 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10944 52.524 NaN 118510 35 0 14764 0.261 -1 0 32 635.1399887886525 NaN 0 635.1405639648438 PEAK HCD FTMS 0 0 0 10935 5966.8232421875 0.23588945257596708 -1 0.02620697021484375 9 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 2.2185 0 0 0.17492 0 0 666.64794525133 451.5296724908813 1118.1776177422114 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.17492 - 1 + NaN NaN 112104 NaN 8132 2810 10935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10946 52.529 NaN 992680 35 0 75785 0.327 + 5670 FPAAIEHTI 9 84 499.7689431090989 997.5233332849979 2 499.76904296875 MULTI HCD FTMS 0 0 0 10945 523263.65625 0.877928405192184 1 -0.0195770263671875 1 Unmodified _FPAAIEHTI_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 139.54400939418784 2.61670173137287E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AA[KP]AAPE 10 6 + 75.623 0 0 7.581 7.581 88.514 0 0 0 1.2067430123794765 25.295000083553205 1.2067430123794765 4.276975736484232 0 0 1.6989700043360187 1.9247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AA[KP]AAPE;{M(Oxidation (M))|F}PAA{[QN]|[E{I|L}]|[KN]}HT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AA{[QN]|[E{I|L}]|[KN]}HT{I|L};[HT]{I|L}E{I|L}AAP{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}A{[QN]|[E{I|L}]|[KN]}HT{I|L};[{I|L}T]HE{I|L}AAP{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}A[KP]AAPE;[PA]A{M(Oxidation (M))|F}[KP]AAPE;{M(Oxidation (M))|F}{I|L}[SG]{I|L}EH[VP];{M(Oxidation (M))|F}PAA{[NV]|[RG]}[PS][VP] 7.581;7.1523;6.6313;4.3165;4.2006;4.1778;4.1478;4.0455;3.9513;3.7157 -;+;+;-;-;-;-;-;-;- + 1155 NaN NaN 244577.5 NaN 8133 2811 10945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10947 52.533 NaN 310840 35 0 34881 0.261 + 9801 HYLYQIAHL 9 63 579.3085829031326 1156.602612873065 2 579.3084716796875 MULTI HCD FTMS 0 0 0 10945 142376.53125 0.46518990540593663 -6 0.17229843139648438 2 Unmodified _HYLYQIAHL_ ENSG00000189091|ENST00000302516|SF3B3 64.23631603340823 0.01165516075559909 2 {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L} 9 0 + 73.171 0 0 6.3264 6.3264 87.2 0 0 0 6.63303128443836 6.63303128443836 6.63303128443836 6.63303128443836 0 2.1549471895720984 1.5228787452803376 0 0.6549471895720984 + + {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L};HY{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[YQ]{I|L}A{I|L}H;[H{I|L}]Y[YQ]{I|L}AH{I|L};[H{I|L}]Y[YQ]{I|L}A{I|L}H;{I|L}HY[YQ]{I|L}AH{I|L};{[RE]|[WV]}Q[YQ]{I|L}AH{I|L};{[RE]|[WV]}[AG][YQ]{I|L}AH{I|L} 6.3264;5.7529;5.5957;3.5826;2.8519;2.6483;2.3827;1.5866 +;+;-;-;-;-;-;- + 117 NaN NaN 131648.5 NaN 8134 2811 10945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10948 52.537 NaN 112910 35 0 8353.9 0.261 + -1 RVSNHRQAM 9 53 557.7795443397043 1113.5445357462086 2 557.7799072265625 MULTI HCD FTMS 0 0 0 10945 33388.3359375 0.025251803861075256 28 -0.6379013061523438 3 Oxidation (M) _RVSNHRQAM(Oxidation (M))_ REV__ENSG00000110925|ENST00000228515|CSRNP2 1.844237919475145 0.33703635659052655 2 TN{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 21.44 0 0 1.9254 0 0 662.37602431465 0 662.37602431465 0 15.955612550363796 0 0 0 0.5 0 0.3252574989159953 0 TN{[MS]|[{M(Oxidation (M))|F}A]} 1.9254 - 16 NaN NaN 99907.5 NaN 8135 2811 10945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10949 52.54 NaN 162960 35 0 8364.3 0.261 + 16545 LTRYRPQFP 9 59 589.3267663889518 1176.6389798447035 2 589.3282470703125 MULTI HCD FTMS 0 0 0 10945 25409.6640625 0.16673303650091398 9 -0.21609878540039062 4 Unmodified _LTRYRPQFP_ REV__ENST00000326199.12_1_6:34392994-34393855:-|nuORF 3.944395688203298 0.32111559684428237 2 [Y{I|L}]N 3 -1 27.447 0 0 2.3327 0 0 0 783.4260347955686 783.4260347955686 19.030899869919438 0 0 0 0 0 2 0 0 [Y{I|L}]N 2.3327 - 25 + NaN NaN 104100.1 NaN 8136 2811 10945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10950 52.543 NaN 176210 35 0 14998 0.261 + 12530 KSADLELKIS 10 57 552.3182817698001 NaN 0 552.3182373046875 PEAK HCD FTMS 0 0 0 10945 20807.29296875 0.45709849170379163 1 -0.0195770263671875 5 Unmodified _KSADLELKIS_ REV__ENSG00000084676|ENST00000348332|NCOA1;REV__nc|ENSG00000084676|Q15788-2|NCOA1;REV__nc|ENSG00000084676|Q15788-3|NCOA1 7.101721422024254 0.3341061997659158 2 {I|L} 1 -1 11.237 0 0 1.0191 0 0 346.2194359987814 640.2936495416624 986.5130855404439 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.0191 + + 19 + NaN NaN 117001 NaN 8137 2811 10945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10952 52.548 NaN 2373700 35 0 537760 0.327 + 29957 VFHSPSSFQT 10 110 568.7722322171772 1135.5299115011544 2 568.7723388671875 MULTI HCD FTMS 0 0 0 10951 1521288.5 0.9117498659192255 1 -0.03621673583984375 1 Unmodified _VFHSPSSFQT_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 22.736283301280096 0.29844449404982915 2 [YR]{M(Oxidation (M))|F}STSVST 9 7 96.656 0 0 8.512 0 0 0 104.03356754517577 104.03356754517577 47.43074526038984 0 0 0 0 3.1237125054200234 1.154901959985743 1.524227503252014 0 [YR]{M(Oxidation (M))|F}STSVST 8.512 - 3440 NaN NaN 447465.1 NaN 8138 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10953 52.553 NaN 784660 35 0 98378 0.261 + 8047 GHDFIGEFQT 10 90 575.7619239485464 1149.5092949638927 2 575.761962890625 MULTI HCD FTMS 0 0 0 10951 235573.375 0.8191237996636075 2 -0.06579208374023438 2 Unmodified _GHDFIGEFQT_ CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant;ENSG00000140848|ENST00000290776|CPNE2;nc|ENSG00000140848|Q96FN4-2|CPNE2 8.745405648335112 0.42901288225909884 2 [HA]SVHHSVS 9 9 48.918 0 0 4.2556 0 0 0 205.06186853580314 205.06186853580314 34.45432175029467 0 0 0 0 0.5 0 1.5044321917401078 0 [HA]SVHHSVS 4.2556 - 721 + NaN NaN 220162.2 NaN 8139 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10954 52.556 NaN 458510 35 0 92870 0.261 + 22888 QYPGRSLVF 9 58 533.787781849045 1065.56101076489 2 534.2899169921875 MULTI HCD FTMS 0 0 0 10951 149719.6875 0.21963286380207184 -10 0.24405670166015625 3 Unmodified _QYPGRSLVF_ ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 20.453626601364224 0.18364154288633264 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QG]|[NA]}{[HG]|PP}{I|L}VA 9 6 30.123 0 0 2.827 0 0 0 127.06744986890762 127.06744986890762 10.39136227485692 0 0 0 0 0 2 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QG]|[NA]}{[HG]|PP}{I|L}VA 2.827 - 126 NaN NaN 170100.8 NaN 8140 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10955 52.56 NaN 172850 35 0 25688 0.261 + 46 AATEQEISL 9 68 481.2456846263114 960.4768163194228 2 481.2455139160156 MULTI HCD FTMS 0 0 0 10951 103411.0703125 0.2236962022698056 6 -0.16405487060546875 4 Unmodified _AATEQEISL_ BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3 47.594388314883695 0.03493607795751234 2 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L} 9 4 + 70.64 0 0 7.3547 7.3547 92.566 0 0 0 9.89454989793387 65.15539695625556 9.89454989793387 12.703037561203843 0 1.9247425010840047 1.3979400086720375 0.805462187404089 0.3494850021680094 {[TV]|[{I|L}S]}[DG]QE{I|L}S{I|L};{[TV]|[{I|L}S]}[DG][AG]E{I|L}S{I|L} 7.3547;6.0321 -;- 74 NaN NaN 115917 NaN 8141 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10956 52.563 NaN 297090 35 0 37338 0.261 + -1 LVMRSDCWC 9 52 593.2453920307562 1184.4762311283123 2 593.2456665039062 MULTI HCD FTMS 0 0 0 10951 119458.046875 0.17254283399666492 11 -0.28525543212890625 5 Carbamidomethyl (C),Oxidation (M) _LVM(Oxidation (M))RSDC(Carbamidomethyl (C))WC_ REV__ENST00000541451.5_3_16:2198830-2200035:+|nuORF;REV__ENST00000565592.5_1_16:2190927-2200035:+|nuORF 4.3292370932331545 0.3181982124262546 2 [{I|L}V]{I|L}DE 5 -1 39.693 0 0 3.3511 0 0 0 612.1480806940061 612.1480806940061 38.979400086720375 0 0 0 0 0.5 1.6989700043360187 0 0 [{I|L}V]{I|L}DE 3.3511 - 17 + NaN NaN 144668.2 NaN 8142 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10957 52.566 NaN 446970 35 0 65011 0.261 + 2523 DSPIMETHPL 10 70 570.272297521519 1138.530042109838 2 570.2772216796875 MULTI HCD FTMS 0 0 0 10951 81817.5703125 0.8320648811485025 2 -0.06579208374023438 6 Unmodified _DSPIMETHPL_ ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000099715|Q9BZA8|PCDH11Y 6.723162845929126 0.4397169348982109 2 SV[YV]SVS 7 9 21.445 0 0 1.8836 0 0 209.0795521766036 205.06191431217033 414.141466488774 0 0 0 0 0 0 0 0.75 0 SV[YV]SVS 1.8836 - 500 + NaN NaN 159501.5 NaN 8143 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10958 52.57 NaN 130280 35 0 10419 0.261 + 6852 FPTGDSKVVL 10 49 531.7949018298181 1061.575250726436 2 531.7953491210938 MULTI HCD FTMS 0 0 0 10951 19959.900390625 0.22168141727295998 16 -0.3930625915527344 7 Unmodified _FPTGDSKVVL_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.I969V|1|0.21|ENSG00000181222|chr17:7503269-7503269|A/G|missense_variant 16.565877749689598 0.3561603856738253 2 TPE 3 9 26.427 0 0 2.4894 0 0 716.4024525373062 0 716.4024525373062 0 9.771212547196622 0 0 0 0.5 0 0 0 TPE 2.4894 - 24 NaN NaN 103242 NaN 8144 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10959 52.573 NaN 141400 35 0 21277 0.261 + 1660 CCTLITCPTF 10 44 551.2422035660203 1100.4698541988405 2 551.2423706054688 MULTI HCD FTMS 0 0 0 10951 49439.0625 0.8987869103663797 -3 0.07866287231445312 8 Unmodified _CCTLITCPTF_ ENST00000460849.5_1_3:55640917-55717870:-|nuORF 19.256988751693697 0.33098864134661865 2 T{M(Oxidation (M))|F} 2 8 32.206 0 0 2.9266 0 0 834.3436162611437 0 834.3436162611437 0 23.253800256993955 0 0 0 1 0 0.4247425010840047 0 + T{M(Oxidation (M))|F} 2.9266 + + 39 + NaN NaN 107838.2 NaN 8145 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10960 52.576 NaN 173110 35 0 10198 0.261 + 14054 KYVKIFDNF 9 74 587.318695362189 1172.622837791178 2 587.3191528320312 MULTI HCD FTMS 0 0 0 10951 41287.375 0.3146632269226024 -5 0.13613510131835938 9 Unmodified _KYVKIFDNF_ ENSG00000005801|ENST00000399602|ZNF195;nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195 19.361941925380144 0.1930734562688509 2 KYV 3 6 27.703 0 0 2.3625 0 0 0 779.3762911432249 779.3762911432249 19.631068929195408 0 0 0 0 0.5 0 0 0 + KYV 2.3625 + + 65 + NaN NaN 124578.2 NaN 8146 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10961 52.58 NaN 95449 35 0 12336 0.264 -1 KYMTAVVKLF 10 46 405.8983127928212 1214.6731089786635 3 405.8983459472656 MULTI HCD FTMS 0 0 0 10951 25095.328125 1 0 0 10 Oxidation (M) _KYM(Oxidation (M))TAVVKLF_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 7.477065608646677 0.43572640772348226 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2748 0 0 1049.5937460409666 0 1049.5937460409666 0 -0.9691001300805624 -0.9691001300805624 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2748 + + 11 + NaN NaN 98898 NaN 8147 2812 10951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10963 52.585 NaN 638220 35 0 92091 0.327 -1 VMAPRTVLL 9 60 508.3021521785982 1014.5897514239964 2 508.30218505859375 MULTI HCD FTMS 0 0 0 10962 315842.4375 0.8334976914813659 4 -0.11494064331054688 1 Oxidation (M) _VM(Oxidation (M))APRTVLL_ ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant 24.990960013464015 0.14443998892849796 2 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L} 9 -1 + 52.853 0 0 5.2093 5.2093 89.174 0 0 0 7.147642715192504 34.89454989793387 7.147642715192504 13.789850105233292 0 1.3494850021680094 0 0.3494850021680094 0 [{M(Oxidation (M))|F}V]A[RP]T{I|L}V{I|L};[{I|L}T]C[RP]T{I|L}V{I|L};[{M(Oxidation (M))|F}V]A[RP]V[{I|L}T]{I|L};[{I|L}T]C[RP]V[{I|L}T]{I|L} 5.2093;3.8502;3.3624;2.0033 -;-;-;- 122 NaN NaN 179700.9 NaN 8148 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10964 52.589 NaN 197650 35 0 20441 0.261 + 9888 IANQDPIAV 9 54 470.7585657142765 939.502578495353 2 470.7585754394531 MULTI HCD FTMS 0 0 0 10962 88657.796875 0.29218265907121727 4 -0.11494064331054688 2 Unmodified _IANQDPIAV_ ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-2|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-7|NRG1 22.736283301280096 0.1639198954644489 2 HD[{I|L}P]AV 6 4 34.442 0 0 3.666 0 0 289.15184218574376 0 289.15184218574376 0 31.765997036641593 0 0 0 1.3807196863200843 0 0 0 HD[{I|L}P]AV 3.666 - 32 NaN NaN 115140.5 NaN 8149 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10965 52.593 NaN 770820 35 0 91165 0.261 + 23061 RECLIDPDL 9 78 537.2689140649122 1072.5232751966244 2 537.7705688476562 MULTI HCD FTMS 0 0 0 10962 98683.03125 0.26468866492803544 19 -0.4484367370605469 3 Unmodified _RECLIDPDL_ ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF 14.838274106304384 0.23215694253501695 2 [{M(Oxidation (M))|F}V]EK{I|L}E{I|L} 7 7 27.211 0 0 2.5371 0 0 0 211.0203814800806 211.0203814800806 6.074097936283135 0 0 0 0 0.8494850021680094 0 0 0 [{M(Oxidation (M))|F}V]EK{I|L}E{I|L} 2.5371 - 425 NaN NaN 203141.7 NaN 8150 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10966 52.596 NaN 216910 35 0 68187 0.262 + 17676 MAFAWWPCLIL 11 51 450.89809741107604 NaN 0 450.8978576660156 PEAK HCD FTMS 0 0 0 10962 54830.7421875 0.7360312797313918 2 -0.059173583984375 4 Unmodified _MAFAWWPCLIL_ ENSG00000162267|ENST00000449956|ITIH3 5.40270961882225 0.32679421217879406 2 W 1 10 3.9794 0 0 0.44226 0 0 582.6081017051615 128.07149683170158 710.6795985368631 0 0 0 0 0 0 0 0 0 + W 0.44226 + + 6 + NaN NaN 127136.2 NaN 8151 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10967 52.599 NaN 207440 35 0 26391 0.261 + 33004 YAVRDTIAL 9 63 511.28757032401853 1020.5605877148371 2 511.2876281738281 MULTI HCD FTMS 0 0 0 10962 80186.3203125 0.8595430402997123 -1 0.03621673583984375 5 Unmodified _YAVRDTIAL_ ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C 26.268140514670165 0.13340543277302316 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[TV]|[{I|L}S]}{[RE]|[WV]}A{I|L} 9 4 + 32.666 0 0 3.2008 3.2008 82.975 0 0 0 5.615065281575518 2.9736963957402978 2.9736963957402978 6.600971678920047 0 1.305462187404089 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[TV]|[{I|L}S]}{[RE]|[WV]}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EE[RK]{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[DV][RK]{I|L}{I|L} 3.2008;2.554;0.64565 -;-;- 56 + NaN NaN 113784.9 NaN 8152 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10968 52.603 NaN 136660 35 0 13358 0.261 + 34802 YRAVLQDI 8 54 489.2743675400222 976.5341821468444 2 489.27447509765625 MULTI HCD FTMS 0 0 0 10962 20545.916015625 0.582390447907947 1 -0.029575347900390625 6 Unmodified _YRAVLQDI_ ENSG00000127720|ENST00000248306|METTL25;ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENST00000548432.5_1_12:82832322-82872800:+|nuORF 7.289230182591677 0.5311777711368266 2 QD{I|L} 3 5 29.693 0 0 3.0406 0 0 602.3543568341812 0 602.3543568341812 0 22.703037561203843 0 0 0 0.5 0 0 0 + QD{I|L} 3.0406 + + 31 NaN NaN 104540.9 NaN 8153 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10969 52.606 NaN 220930 35 0 23361 0.261 + 7077 FQVRIEAF 8 58 505.27681951727675 1008.5390861013535 2 505.27642822265625 MULTI HCD FTMS 0 0 0 10962 26875.947265625 0.0042077895715353026 77 -1.7626457214355469 7 Unmodified _FQVRIEAF_ REV__ENSG00000102452|ENST00000251127|NALCN;REV__ENST00000470333.1_1_13:101833448-102051507:-|nuORF;REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF;REV__nc|ENSG00000102452|Q8IZF0-2|NALCN 11.640296217721598 0.50814828952472 2 A{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.9524 0 0 772.4222149133396 0 772.4222149133396 0 25.17220322351953 0 0 0 0.8807196863200843 0 0 0 A{M(Oxidation (M))|F} 2.9524 + + 17 NaN NaN 116678.2 NaN 8154 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10970 52.609 NaN 106800 35 0 10071 0.261 + -1 ISMCTPEI 8 56 475.7193141223468 949.4240753114937 2 475.7198486328125 MULTI HCD FTMS 0 0 0 10962 30454.62109375 1 0 0 8 Carbamidomethyl (C) _ISMC(Carbamidomethyl (C))TPEI_ REV__ENST00000564440.5_1_15:72491378-72491480:-|nuORF 24.67388899826682 0.4122521268485776 2 E{I|L} 2 -1 27.717 0 0 2.9193 0 0 689.2855091779312 0 689.2855091779312 0 23.112431371158735 0 0 0 0.3252574989159953 0 0.3494850021680094 0 E{I|L} 2.9193 + + 17 NaN NaN 98718.9 NaN 8155 2813 10962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10972 52.614 NaN 2474800 35 0 474960 0.327 + 15497 LPDMVVSHL 9 105 513.768193570899 NaN 0 513.7681274414062 PEAK HCD FTMS 0 0 0 10971 1225580.25 1 0 0 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 128.3654064809346 2.663822629604528E-13 2 PD{M(Oxidation (M))|F}VVS 6 3 69.87 0 0 6.8131 0 0 113.08510713868652 265.1303195685108 378.2154267071973 0 0 0 0 0 1.9802046884880937 0 1.5911290632962718 0 + PD{M(Oxidation (M))|F}VVS 6.8131 + + 960 + NaN NaN 456623.6 NaN 8156 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10973 52.619 NaN 666970 35 0 56912 0.261 + 34682 YPTVDSNSL 9 82 498.23769286981434 994.4608328064287 2 498.23773193359375 MULTI HCD FTMS 0 0 0 10971 392889.40625 0.951328455141461 2 -0.059154510498046875 2 Unmodified _YPTVDSNSL_ ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 163.03601447609117 7.615514112917802E-09 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSNS{I|L} 9 0 + 94.58 0 0 9.5107 9.5107 95.448 0 0 0 18.298122174395033 16.478174818886373 16.478174818886373 12.703037561203843 0 1.8001648626366045 1.3979400086720375 0.75 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSNS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSGGS{I|L};{[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSNS{I|L};{[TV]|[{I|L}S]}DS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NS{I|L};{[TV]|[{I|L}S]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SNS{I|L};{[TV]|[{I|L}S]}DSN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L};{[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSGGS{I|L};{[TV]|[{I|L}S]}DS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GGS{I|L};{[TV]|[{I|L}S]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SGGS{I|L};{[TV]|[{I|L}S]}NSD{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L} 9.5107;8.2333;7.6707;7.3777;7.3166;6.4453;6.3933;6.1004;6.0393;5.7911 +;-;-;-;-;-;-;-;-;- + 1197 NaN NaN 189021.9 NaN 8157 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10974 52.622 NaN 299800 35 0 30249 0.261 -1 IPHMDIEAL 9 58 527.7655620720968 NaN 0 527.765625 PEAK HCD FTMS 0 0 0 10971 148510.90625 0.4066995579606576 24 -0.5362510681152344 3 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 32.30548876998284 0.10480114246275442 2 AE{I|L} 3 -1 25.445 0 0 2.4153 0 0 131.0963274163135 606.2316988580686 737.3280262743822 0 0 0 0 0 0.9247425010840047 0 0 0 AE{I|L} 2.4153 - 56 + NaN NaN 138941.4 NaN 8158 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10975 52.626 NaN 407220 35 0 28931 0.261 + 9081 HPFFKDMSL 9 61 561.2758696317486 1120.5371863302971 2 561.2765502929688 MULTI HCD FTMS 0 0 0 10971 154805.109375 0.5650750842006634 -8 0.224822998046875 4 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 36.506200033944 0.08138327636155518 2 HP{M(Oxidation (M))|F}[YR]AM 7 5 32.695 0 0 2.9178 0 0 0 215.10372339420158 215.10372339420158 10.304716679859212 0 0 0 0 0.8494850021680094 0 0 0 HP{M(Oxidation (M))|F}[YR]AM 2.9178 - 400 + NaN NaN 158827.3 NaN 8159 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10976 52.629 NaN 314380 35 0 45695 0.263 -1 SYCYECTARF 10 59 433.8423905542332 1298.5053422628996 3 433.842529296875 MULTI HCD FTMS 0 0 0 10971 95460.4921875 0.6857549968195501 -1 0.029575347900390625 5 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))YECTARF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 10.898955630103616 0.4091668631510381 2 SY[DN]{I|L}Y 6 -1 66.159 0 0 5.095 0 0 0 540.169106925025 540.169106925025 48.19984993812689 0 0 0 0 1.3494850021680094 2 0 0.4247425010840047 SY[DN]{I|L}Y 5.095 - 77 + NaN NaN 133348 NaN 8160 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10977 52.632 NaN 704060 35 0 178260 0.261 + 11107 IYIAGHPAF 9 51 494.7661233973819 987.5176938615638 2 494.76641845703125 MULTI HCD FTMS 0 0 0 10971 203491.59375 0.2383342776328388 -6 0.17235183715820312 6 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 79.93452657146344 0.0058735632865073864 2 {I|L}Y{I|L}QH[PA]{M(Oxidation (M))|F} 8 2 + 83.365 0 0 8.4419 8.4419 93.439 0 0 0 61.37517525248825 16.989700043360187 16.989700043360187 9.262137858390815 0 2 1.6989700043360187 0 0 {I|L}Y{I|L}QH[PA]{M(Oxidation (M))|F};{I|L}Y{I|L}[AG]H[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}AGH[PA]{M(Oxidation (M))|F};{I|L}YG[{I|L}A]H[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}QH[PA]{M(Oxidation (M))|F};{I|L}YG[Y{I|L}]{[NV]|[RG]}{M(Oxidation (M))|F};{I|L}Y{I|L}[YG]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]A{I|L}GH[PA]{M(Oxidation (M))|F};[Y{I|L}]GH[{I|L}A][PA]{M(Oxidation (M))|F} 8.4419;7.5039;6.6709;6.4913;6.0149;5.969;5.969;5.4567;4.8974 -;+;+;-;-;-;-;-;- + 167 + NaN NaN 192936.7 NaN 8161 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10978 52.636 NaN 121700 35 0 13451 0.261 -1 LPMSDQYVKL 10 42 605.3127083379318 1208.6108637426635 2 605.3129272460938 MULTI HCD FTMS 0 0 0 10971 42269.36328125 0.7221434927044932 2 -0.059154510498046875 7 Oxidation (M) _LPM(Oxidation (M))SDQYVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 22.65808497894818 0.29917593477267174 2 {I|L}P{M(Oxidation (M))|F} 3 -1 23.188 0 0 1.9185 0 0 0 848.4107760065061 848.4107760065061 17.703037561203843 0 0 0 0 0 0 0 0 {I|L}P{M(Oxidation (M))|F} 1.9185 + + 20 + NaN NaN 101911.7 NaN 8162 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10979 52.639 NaN 111900 35 0 8990.7 0.261 -1 YANVACAQLGF 11 41 607.2869238669952 1212.5592948007902 2 607.2872314453125 MULTI HCD FTMS 0 0 0 10971 32981.703125 0.6229442520806024 8 -0.18324661254882812 8 Carbamidomethyl (C) _YANVAC(Carbamidomethyl (C))AQLGF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 2.735195868890462 0.4069250265843076 2 N{[ES]|[DT]|[{I|L}C]} 3 -1 10.458 0 0 0.86244 0 0 864.4144806976789 0 864.4144806976789 0 3.4678748622465623 0 0 0 0 0 0 0 N{[ES]|[DT]|[{I|L}C]} 0.86244 - 7 NaN NaN 105772.7 NaN 8163 2814 10971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10981 52.644 NaN 1264200 35 0 282630 0.327 + 29211 TYLDKVENI 9 93 547.7902600939831 NaN 0 547.790283203125 PEAK HCD FTMS 0 0 0 10980 763701.625 1 0 0 1 Unmodified _TYLDKVENI_ ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000185745|P09914-2|IFIT1 117.83759599426817 1.162466988731321E-08 2 {I|L}DKVE 5 4 62.752 0 0 5.7383 0 0 264.11191882160534 242.1143740289672 506.2262928505726 0 0 0 0 0 2.6237125054200234 0 1.110924374808178 0.7614393726401688 + {I|L}DKVE 5.7383 + + 522 + NaN NaN 276555.8 NaN 8164 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10982 52.648 NaN 932720 35 0 187020 0.261 + 22889 QYPGRSLVF 9 77 533.787781849045 1065.56101076489 2 533.7877807617188 MULTI HCD FTMS 0 0 0 10980 356054.28125 0.3397953903785642 -6 0.17405319213867188 2 Unmodified _QYPGRSLVF_ ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 69.10491478415734 0.009377850133389008 2 [YQ]PK{[RE]|[WV]}V{M(Oxidation (M))|F} 8 3 + 52.84 0 0 4.9589 4.9589 85.724 0 0 0 8.336586673740882 8.336586673740882 8.336586673740882 8.336586673740882 0 1.742992819099939 1.3010299956639813 0.6307196863200843 1.1989700043360187 [YQ]PK{[RE]|[WV]}V{M(Oxidation (M))|F};[YQ]PGR{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};[YQ]PGR[YV][{I|L}A];[YQ]P[H{I|L}][QP][{I|L}A] 4.9589;4.1765;1.7782;0.92882 -;+;-;- + 271 NaN NaN 221573 NaN 8165 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10983 52.652 NaN 248120 35 0 35657 0.261 + 19734 NYATRIVTL 9 65 525.8007217462326 1049.5868905592652 2 525.8008422851562 MULTI HCD FTMS 0 0 0 10980 85379.5 0.30074909215877704 4 -0.08821868896484375 3 Unmodified _NYATRIVTL_ BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 55.23464941255904 0.024247875903973527 2 [YN]ATR{I|L}VT{I|L} 9 0 + 63.835 0 0 6.0819 6.0819 93.597 0 0 0 38.61818737241734 11.39506772603255 11.39506772603255 63.83471251333795 0 2.6237125054200234 1.6989700043360187 0.3494850021680094 0 + + [YN]ATR{I|L}VT{I|L} 6.0819 + + 70 + NaN NaN 121171 NaN 8166 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10984 52.655 NaN 457300 35 0 61442 0.261 + -1 YGSVGYKNCT 10 67 574.7543767441833 NaN 0 574.7723388671875 PEAK HCD FTMS 0 0 0 10980 36443.13671875 0.5053631275232424 5 -0.10113143920898438 4 Carbamidomethyl (C) _YGSVGYKNC(Carbamidomethyl (C))T_ REV__ENSG00000167004|ENST00000300289|PDIA3;REV__ENST00000434494.5_1_15:44038867-44063413:+|nuORF;REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF 10.823927491677226 0.33092050725491123 2 SVST{M(Oxidation (M))|F}VS 7 -1 51.586 0 0 4.4955 0 0 220.0491651837629 217.06167017154533 437.11083535530827 0 0 0 0 0 0 0 1.110924374808178 0 SVST{M(Oxidation (M))|F}VS 4.4955 - 213 + NaN NaN 157511.3 NaN 8167 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10985 52.658 NaN 186670 35 0 23773 0.261 + 9650 HVAYDSTVNY 10 62 584.7670745769749 1167.5195962207497 2 584.7667236328125 MULTI HCD FTMS 0 0 0 10980 106870.125 0.398426307401782 3 -0.06866455078125 5 Unmodified _HVAYDSTVNY_ REV__ENSG00000052126|ENST00000429027|PLEKHA5;REV__ENST00000539256.5_1_12:19282733-19418734:+|nuORF;REV__nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;REV__nc|ENSG00000052126|Q9HAU0|PLEKHA5 9.38312468134398 0.42334543440173333 2 [HA]SVS 5 -1 30.343 0 0 2.5989 0 0 0 683.2813814752561 683.2813814752561 18.660743531280843 0 0 0 0 1.4247425010840047 0 0.3252574989159953 0 [HA]SVS 2.5989 - 90 + NaN NaN 118951.6 NaN 8168 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10986 52.662 NaN 577900 35 0 59527 0.261 + 32365 VYVQHPITF 9 83 552.2969617033621 1102.579370473524 2 552.2977905273438 MULTI HCD FTMS 0 0 0 10980 150992.671875 0.48966157898593177 -4 0.11496734619140625 6 Unmodified _VYVQHPITF_ ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF 110.6747026088012 0.0028322563155251486 2 VYVQHP{I|L}T 8 1 95.131 0 0 8.628 0 0 0 162.05581079654533 162.05581079654533 78.14117228912984 0 0 0 0 2.941962823435958 1.5228787452803376 1.1549471895720984 0.3807196863200844 + VYVQHP{I|L}T 8.628 + + 962 + NaN NaN 176025.8 NaN 8169 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10987 52.665 NaN 190360 35 0 17039 0.261 + 31374 VYADQPHIF 9 54 545.2719907098738 1088.5294284865474 2 545.2733764648438 MULTI HCD FTMS 0 0 0 10980 94728.4375 0.2537605416844243 12 -0.27474212646484375 7 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 29.081581746732265 0.1154664336125038 2 [YT]VS[YG]RP{M(Oxidation (M))|F} 9 7 + 61.794 0 0 5.6768 5.6768 89.091 0 0 0 3.868865538569466 47.836003313407076 3.868865538569466 10.560931587959672 0 2.274227503252014 2 0 0 [YT]VS[YG]RP{M(Oxidation (M))|F};[YT][PS]Q[H{I|L}]P{M(Oxidation (M))|F};[YV][H{I|L}]QDAP{M(Oxidation (M))|F};[YV]TS[YG]RP{M(Oxidation (M))|F};[YV]ADQ[H{I|L}]P{M(Oxidation (M))|F};[YV]R[YG]STP{M(Oxidation (M))|F};[YV][H{I|L}][AG]DAP{M(Oxidation (M))|F};[YV]AD[AG][H{I|L}]P{M(Oxidation (M))|F};[YV]R[YG][DV]A{M(Oxidation (M))|F} 5.6768;4.7066;4.2384;4.1815;4.031;3.9741;3.3925;3.1851;2.9429 -;-;-;-;-;-;-;-;- 318 NaN NaN 114137.5 NaN 8170 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10988 52.668 NaN 170890 35 0 11823 0.261 + 9977 IEHGIITNW 9 60 541.7850249789041 1081.555497024608 2 541.7848510742188 MULTI HCD FTMS 0 0 0 10980 69392.078125 0.02723568994082724 32 -0.6893348693847656 8 Unmodified _IEHGIITNW_ ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF 41.8396318013385 0.056899836730939755 2 VTNW 4 6 53.175 0 0 4.9166 0 0 563.3062000959 0 563.3062000959 0 46.18562527100117 0 0 0 1.3494850021680094 0 0.4247425010840047 0.3494850021680094 VTNW 4.9166 - 89 NaN NaN 110903.8 NaN 8171 2815 10980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10990 52.673 NaN 1520300 35 0 149050 0.327 + 23062 RECLIDPDL 9 91 537.2689140649122 1072.5232751966244 2 538.2850341796875 MULTI HCD FTMS 0 0 0 10989 49087.35546875 0.3850135403444911 19 -0.4217987060546875 1 Unmodified _RECLIDPDL_ ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF 20.453626601364224 0.18364154288633264 2 {[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TD 8 6 51.909 0 0 4.8399 0 0 0 169.0582516260063 169.0582516260063 3.600840614449794 0 0 0 0 0.3054621874040891 0.8538719643217619 2.473197507588033 0 {[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TD 4.8399 - 1198 NaN NaN 315705.4 NaN 8172 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10991 52.678 NaN 586510 35 0 63493 0.261 + 9802 HYLYQIAHL 9 69 579.3085829031326 1156.602612873065 2 579.3087768554688 MULTI HCD FTMS 0 0 0 10989 296203.03125 0.9677905401852469 -1 0.0295562744140625 2 Unmodified _HYLYQIAHL_ ENSG00000189091|ENST00000302516|SF3B3 74.42276476219924 0.007657080072768255 2 {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L} 9 0 + 72.36 0 0 6.2563 6.2563 85.74 0 0 0 3.252574989159953 3.252574989159953 3.252574989159953 3.252574989159953 0 2.2302046884880937 1.5228787452803376 0 0.6747425010840047 + + {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L};HY{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[QA]{I|L}YH{I|L};{[WN]|[YH]}{I|L}[YQ]{I|L}A{I|L}H;{[WN]|[YH]}{I|L}[YQ]A{I|L}H{I|L};{[WN]|[YH]}{I|L}[QA]Y{I|L}H{I|L};{[WN]|[YH]}{I|L}[QA]{I|L}Y{I|L}H;{[WN]|[YH]}{I|L}[YQ]A{I|L}{I|L}H;[H{I|L}]Y[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[QA]Y{I|L}{I|L}H 6.2563;5.9751;5.7121;5.5256;5.4765;5.2996;4.9815;4.7459;4.6203;4.5689 +;+;-;-;-;-;-;-;-;- + 365 NaN NaN 175365.3 NaN 8173 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10992 52.681 NaN 393760 35 0 74505 0.261 + 29958 VFHSPSSFQT 10 67 568.7722322171772 1135.5299115011544 2 569.775390625 MULTI HCD FTMS 0 0 0 10989 83556.3828125 0.23915597787475307 6 -0.12409210205078125 3 Unmodified _VFHSPSSFQT_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 8.155526934196011 0.43213520406898465 2 SVS 3 8 36.414 0 0 3.2068 0 0 654.3137687783013 205.0620058649047 859.375774643206 0 0 0 0 0 1.6989700043360187 0 0.7742275032520141 0 SVS 3.2068 - 239 + NaN NaN 154980.3 NaN 8174 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10993 52.685 NaN 155780 35 0 18261 0.261 + -1 LDLCTMSL 8 46 484.722979401726 NaN 0 484.7066955566406 PEAK HCD FTMS 0 0 0 10989 9628.91796875 0.6030715632837512 1 -0.026210784912109375 4 Carbamidomethyl (C),Oxidation (M) _LDLC(Carbamidomethyl (C))TM(Oxidation (M))SL_ REV__ENST00000476741.2_1_17:56770753-56770891:+|nuORF 7.910154910731844 0.38822285293237185 2 S{M(Oxidation (M))|F} 2 -1 14.776 0 0 1.5274 0 0 131.12940341225539 599.2128389947874 730.3422424070427 0 0 0 0 0 0 0 0.3807196863200844 0 S{M(Oxidation (M))|F} 1.5274 - 15 + NaN NaN 105498.9 NaN 8175 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10994 52.688 NaN 719640 35 0 152420 0.261 + 11734 KDFISRFE 8 86 521.2715994128109 1040.5286458924218 2 522.2901611328125 MULTI HCD FTMS 0 0 0 10989 8519.236328125 0.0381477968526086 20 -0.4413604736328125 5 Unmodified _KDFISRFE_ ENSG00000134184|ENST00000309851|GSTM1;ENSG00000134201|ENST00000256593|GSTM5;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000213366|ENST00000241337|GSTM2;ENST00000405166.1_1_6:111368073-111368568:-|nuORF;ENST00000483153.1_1_1:110257451-110260045:+|nuORF;ENST00000492718.1_1_1:110257466-110258024:+|nuORF;ENST00000493171.5_1_1:110201318-110203873:+|nuORF;ENST00000493395.1_1_1:110201441-110203811:+|nuORF;ENST00000496578.3_1_1:110213770-110217455:+|nuORF;nc|ENSG00000168765|Q03013-2|GSTM4;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000213366|P28161-2|GSTM2 19.256988751693697 0.45210759540527456 2 [{I|L}P]DERT{I|L}S 8 8 44.138 0 0 4.2419 0 0 0 126.03240340356628 126.03240340356628 26.83115166307657 0 0 0 0 0 1.6989700043360187 0.909097005026964 0 [{I|L}P]DERT{I|L}S 4.2419 - 445 NaN NaN 195921.4 NaN 8176 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10995 52.691 NaN 114050 35 0 10964 0.261 + 19008 NATRDFLL 8 44 475.2587572352877 948.5029615373754 2 475.2586975097656 MULTI HCD FTMS 0 0 0 10989 43239.19140625 0.8072954370717373 -2 0.059154510498046875 6 Unmodified _NATRDFLL_ ENSG00000108344|ENST00000264639|PSMD3 14.838274106304384 0.4846187982323419 2 {I|L}{I|L} 2 6 25.969 0 0 2.7379 0 0 704.3255482404312 0 704.3255482404312 0 12.870156338638594 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.7379 + + 12 NaN NaN 105395.6 NaN 8177 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10996 52.695 NaN 145080 35 0 22907 0.261 -1 CVYSECIFF 9 44 612.7552086307074 NaN 0 612.75634765625 PEAK HCD FTMS 0 0 0 10989 68829.40625 1 0 0 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))VYSEC(Carbamidomethyl (C))IFF_ ENST00000232564.7_1_3:179118719-179118761:-|nuORF 4.3292370932331545 0.2742679634796037 2 V 1 -1 16.99 0 0 1.3886 0 0 714.2981237049711 407.1059969537719 1121.404120658743 0 0 0 0 0 1 0 0 0 V 1.3886 + + 9 + NaN NaN 102892.8 NaN 8178 2816 10989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10998 52.7 NaN 786070 35 0 136010 0.327 + 29959 VFHSPSSFQT 10 97 568.7722322171772 1135.5299115011544 2 568.7723388671875 MULTI HCD FTMS 0 0 0 10997 326940.46875 0.19594437777343432 6 -0.13409805297851562 1 Unmodified _VFHSPSSFQT_ ENST00000430298.6_1_19:12222347-12224207:+|nuORF 17.11289562659939 0.35104376501799556 2 [HA]SVSTS{M(Oxidation (M))|F} 8 6 71.38 0 0 6.2861 0 0 0 316.14093958072505 316.14093958072505 55.62280436255007 0 0 0 0 2.594187677400525 0 1.031234684152075 0 [HA]SVSTS{M(Oxidation (M))|F} 6.2861 - 1475 + NaN NaN 205425.3 NaN 8179 2817 10997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 10999 52.704 NaN 93565 35 0 4455.3 0.261 + 21071 PLYSHRRRR 9 40 620.8578347168864 NaN 0 620.8582153320312 PEAK HCD FTMS 0 0 0 10997 7109.33642578125 0.26241365714777587 1 -0.012897491455078125 2 Unmodified _PLYSHRRRR_ REV__ENST00000508256.5_1_4:89205591-89205732:-|nuORF 0.5247636613948944 0.2927039108006614 2 {M(Oxidation (M))|F} 1 -1 2.7642 0 0 0.22297 0 0 493.08974062342264 596.5150240533811 1089.6047646768038 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.22297 - 1 + NaN NaN 101485.9 NaN 8180 2817 10997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11000 52.708 NaN 139110 35 0 10919 0.261 + 35938 YYTSRPALF 9 69 559.2869939070176 1116.5594348808352 2 559.2869873046875 MULTI HCD FTMS 0 0 0 10997 34046.42578125 0.7294454726874888 -1 0.026210784912109375 3 Unmodified _YYTSRPALF_ ENSG00000103502|ENST00000219789|CDIPT;nc|ENSG00000103502|O14735-3|CDIPT 29.081581746732265 0.1154664336125038 2 YYT 3 6 32.319 0 0 2.8946 0 0 0 686.3656099908811 686.3656099908811 20.885764330544667 0 0 0 0 0.4247425010840047 2 0 0 + YYT 2.8946 + + 59 + NaN NaN 109071.7 NaN 8181 2817 10997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11002 52.712 NaN 424710 35 0 50829 0.327 + 15523 LPDPGFQKI 9 64 507.7847104108693 1013.5548678885386 2 508.3022155761719 MULTI HCD FTMS 0 0 0 11001 31800.267578125 0.8460067700340622 -4 0.09826278686523438 1 Unmodified _LPDPGFQKI_ ENSG00000059378|ENST00000263549|PARP12 12.240655878213236 0.2545997876781172 2 {I|L}PD 3 6 21.387 0 0 2.1101 0 0 0 685.3684898011368 685.3684898011368 7.4080374776506375 0 0 0 0 0.7742275032520141 0 0 0 + {I|L}PD 2.1101 + + 34 + NaN NaN 154180 NaN 8182 2818 11001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11003 52.717 NaN 580180 35 0 50504 0.261 + 3481 EGPTHSTFTF 10 82 562.2567447247789 1122.4989365163576 2 562.2562866210938 MULTI HCD FTMS 0 0 0 11001 201677.640625 0.9038464299086677 -2 0.0391082763671875 2 Unmodified _EGPTHSTFTF_ REV__ENSG00000184840|ENST00000332598|TMED9;REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF;REV__ENST00000507723.1_1_5:177019275-177020791:+|nuORF;REV__ENST00000513799.5_1_5:177019550-177022414:+|nuORF 49.93300154707207 0.07803319134556608 2 C(Carbamidomethyl (C))T{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5 -1 59.068 0 0 5.2622 0 0 448.2163563459 0 448.2163563459 0 35.88045629527841 0 0 0 1.3807196863200843 0 0.7302046884880937 0 C(Carbamidomethyl (C))T{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.2622 - 649 NaN NaN 172193.4 NaN 8183 2818 11001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11004 52.72 NaN 201560 35 0 17015 0.261 + 14055 KYVKIFDNF 9 69 587.318695362189 1172.622837791178 2 587.3189697265625 MULTI HCD FTMS 0 0 0 11001 90020.65625 0.6860738951147981 1 -0.01955413818359375 3 Unmodified _KYVKIFDNF_ ENSG00000005801|ENST00000399602|ZNF195;nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195 37.07464296494664 0.07877380486334713 2 KYVK{I|L} 5 4 35.952 0 0 3.0659 0 0 0 538.1943453424436 538.1943453424436 16.272547444685763 0 0 0 0 1 0 0 0 + KYVK{I|L} 3.0659 + + 297 + NaN NaN 116078.9 NaN 8184 2818 11001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11005 52.724 NaN 279900 35 0 43088 0.262 + 20791 PHDTPPPVSSM 11 62 582.7696369659596 NaN 0 582.7698364257812 PEAK HCD FTMS 0 0 0 11001 90695.9375 0.41017002665291835 13 -0.2943840026855469 4 Unmodified _PHDTPPPVSSM_ MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant 10.799506525563784 0.3114850535502259 2 SVST 4 9 37.423 0 0 3.2163 0 0 236.0805846707927 550.2404268854124 786.3210115562051 0 0 0 0 0 2 0 0 0 SVST 3.2163 - 85 + NaN NaN 133789.3 NaN 8185 2818 11001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11006 52.727 NaN 141690 35 0 21653 0.261 + 35776 YYMKDLPTSF 10 56 640.7970686471028 1279.5795843610056 2 640.796875 MULTI HCD FTMS 0 0 0 11001 50620.65234375 0.37447456359563447 -5 0.127838134765625 5 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 45.739877483867886 0.09559676962230333 2 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 0 + 49.683 0 0 3.8828 3.8828 90.024 0 0 0 48.969771685254386 13.507112333562858 13.507112333562858 49.68310920309804 0 2.2302046884880937 1.6989700043360187 0.4247425010840047 0 + + YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3.8828 + + 28 + NaN NaN 103634.3 NaN 8186 2818 11001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11008 52.732 NaN 136940 35 0 8965.2 0.327 + 16740 LYATAWLAL 9 64 511.28757032401853 1020.5605877148371 2 511.287353515625 MULTI HCD FTMS 0 0 0 11007 63584.6875 0.6815847815096374 5 -0.12453079223632812 1 Unmodified _LYATAWLAL_ REV__ENSG00000075073|ENST00000373306|TACR2 11.640296217721598 0.25978676193971967 2 A{I|L} 2 -1 25.969 0 0 2.5446 0 0 818.4289720505775 0 818.4289720505775 0 17.897131498072127 0 0 0 0.5 0 0 0 A{I|L} 2.5446 + + 17 NaN NaN 109634.9 NaN 8187 2819 11007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11009 52.736 NaN 180400 35 0 12904 0.261 -1 0 56 590.6398937265084 2948.1630862995416 5 590.8385009765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.23709 0 0 1900.6964486597158 897.3719979475912 2798.068446607307 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.23709 - 1 + NaN NaN 136685.8 NaN 8188 2819 11007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11010 52.74 NaN 103840 35 0 6580.3 0.261 -1 YANVACAQLGF 11 49 607.2869238669952 1212.5592948007902 2 607.787841796875 MULTI HCD FTMS 0 0 0 11007 7583.56494140625 0.2235186937128307 10 -0.22570419311523438 3 Carbamidomethyl (C) _YANVAC(Carbamidomethyl (C))AQLGF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 5.296884461304476 0.39569033063702824 2 G 1 -1 4.6041 0 0 0.3797 0 0 723.330182107234 429.18500696353755 1152.5151890707716 0 0 0 0 0 0 0 0 0 G 0.3797 + + 1 + NaN NaN 97264.3 NaN 8189 2819 11007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11012 52.745 NaN 2104900 35 0 404560 0.327 + 15498 LPDMVVSHL 9 100 513.768193570899 NaN 0 513.7682495117188 PEAK HCD FTMS 0 0 0 11011 891107 0.7270898825270724 6 -0.157379150390625 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 136.33342141710068 1.3858295154724892E-13 2 PD{M(Oxidation (M))|F}VVS 6 3 72.657 0 0 7.0848 0 0 113.08526840340035 265.1302889459594 378.21555734935976 0 0 0 0 0 2.4916440611282624 0 1.6593793813122064 0 + PD{M(Oxidation (M))|F}VVS 7.0848 + + 1512 + NaN NaN 400721.7 NaN 8190 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11013 52.749 NaN 956610 35 0 132900 0.261 + 35960 YYVRAVLHL 9 91 567.3270149163582 1132.6394768995162 2 567.3270874023438 MULTI HCD FTMS 0 0 0 11011 470299.03125 1 0 0 2 Unmodified _YYVRAVLHL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 74.42276476219924 0.007657080072768255 2 YYVRAV{I|L}H{I|L} 9 0 + 75.371 0 0 6.6544 6.6544 91.689 0 0 0 14.391880102955596 16.478174818886373 14.391880102955596 14.391880102955596 0 2.048455006504028 1.5228787452803376 0 0.555462187404089 + + YYVRAV{I|L}H{I|L};[H{I|L}]Y[PA]AV{I|L}H{I|L} 6.6544;5.3838 +;- + 268 NaN NaN 232044.5 NaN 8191 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11014 52.753 NaN 201900 35 0 15640 0.261 + 34683 YPTVDSNSL 9 55 498.23769286981434 994.4608328064287 2 498.23760986328125 MULTI HCD FTMS 0 0 0 11011 94941.640625 0.2298883168331216 8 -0.19654083251953125 3 Unmodified _YPTVDSNSL_ ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 66.45667989310934 0.010234776021261575 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSNS{I|L} 9 0 + 62.401 0 0 6.2748 6.2748 89.005 0 0 0 7.147642715192504 55.32251573369031 7.147642715192504 9.208187539523749 0 1 0 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSNS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVDSGGS{I|L};{[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSNS{I|L};{[TV]|[{I|L}S]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSGGS{I|L} 6.2748;5.3489;4.9948;4.0688 +;-;-;- + 154 NaN NaN 122999 NaN 8192 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11015 52.756 NaN 220650 35 0 24489 0.261 -1 IPHMDIEAL 9 54 527.7655620720968 NaN 0 527.7655639648438 PEAK HCD FTMS 0 0 0 11011 128934.4453125 0.3530890978890403 30 -0.6493263244628906 4 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 20.453626601364224 0.18435338882370536 2 AE{I|L} 3 -1 18.104 0 0 1.7184 0 0 131.09516713045588 606.2392672174436 737.3344343478996 0 0 0 0 0 0.8807196863200843 0 0 0 AE{I|L} 1.7184 - 75 + NaN NaN 131487.3 NaN 8193 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11016 52.76 NaN 300930 35 0 22233 0.261 + 246 AFDVAEREF 9 74 542.258802911905 1082.50305289061 2 542.2582397460938 MULTI HCD FTMS 0 0 0 11011 59228.28515625 0.14789758028570305 -6 0.13072967529296875 5 Unmodified _AFDVAEREF_ ENSG00000133816|ENST00000683283|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-2|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851|MICAL2 49.52724829834842 0.03223213920720493 2 {[MS]|[{M(Oxidation (M))|F}A]}DVAERE{M(Oxidation (M))|F} 9 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 61.916 2.8432 1.3036 5.7197 5.7197 63.484 0 0 0 0 40.71796966806488 0 0 0 2.5356668758921828 0 0.8807196863200843 0.3807196863200844 + + {[MS]|[{M(Oxidation (M))|F}A]}DVAERE{M(Oxidation (M))|F} 5.7197 + + 1001 + NaN NaN 147311 NaN 8194 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11017 52.763 NaN 131730 35 0 8795.9 0.261 -1 AYAMRQYFL 9 49 589.7874283832464 NaN 0 589.7882080078125 PEAK HCD FTMS 0 0 0 11011 16881.048828125 0.4771626964651049 3 -0.08873367309570312 6 Oxidation (M) _AYAM(Oxidation (M))RQYFL_ ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2 10.823927491677226 0.2427956001690155 2 {M(Oxidation (M))|F}YQ 3 -1 15.445 0 0 1.3116 0 0 131.09134052659016 605.2503756158811 736.3417161424713 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}YQ 1.3116 - 8 + NaN NaN 106426.7 NaN 8195 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11018 52.766 NaN 106750 35 0 7080.8 0.261 + 3139 EARAPSLLGTC 11 53 559.2869939070176 1116.5594348808352 2 558.281982421875 MULTI HCD FTMS 0 0 0 11011 17545.24609375 0.5670862362324101 3 -0.08873367309570312 7 Unmodified _EARAPSLLGTC_ REV__ENST00000284110.1_1_17:13505023-13505188:-|nuORF 2.498486711656943 0.4079631525365919 2 NT 2 -1 10.969 0 0 0.9824 0 0 239.0927823707214 659.3531588190061 898.4459411897276 0 0 0 0 0 0 0 0 0 NT 0.9824 - 8 + NaN NaN 102385.7 NaN 8196 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11019 52.769 NaN 61017 35 0 2811.2 0.261 + 23816 RRRKKKKKH 9 37 632.9313354492188 NaN 0 632.9313354492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RRRKKKKKH_ ENSG00000160208|ENST00000340648|RRP1B;nc|ENSG00000160208|Q14684-2|RRP1B 0 0.29524684227089293 2 K 1 8 4.6041 0 0 0.36429 0 0 678.8961560529311 453.83176599674067 1132.7279220496719 0 0 0 0 0 0 0 0 0 + K 0.36429 + + 2 + NaN NaN 100100.9 NaN 8197 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11020 52.773 NaN 57766 35 0 5797.9 0.264 + 1592 AYVKRKIYEF 10 44 439.58274608743505 NaN 0 439.58294677734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _AYVKRKIYEF_ ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;nc|ENSG00000144285|P35498-3|SCN1A 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84359.7 NaN 8198 2820 11011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11022 52.778 NaN 1257900 35 0 325780 0.327 + 11108 IYIAGHPAF 9 59 494.7661233973819 987.5176938615638 2 494.76629638671875 MULTI HCD FTMS 0 0 0 11021 650018.125 0.7613169537629969 1 -0.01964569091796875 1 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 93.76273176245871 0.004427368897683185 2 {I|L}Y{I|L}QHPA{M(Oxidation (M))|F} 8 2 + 88.313 0 0 8.943 8.943 94.061 0 0 0 62.90730039024169 16.40978057358332 16.40978057358332 9.262137858390815 0 2 1.6989700043360187 0 0 {I|L}Y{I|L}QHPA{M(Oxidation (M))|F};{I|L}Y{I|L}[AG]HPA{M(Oxidation (M))|F};{I|L}YG[{I|L}A]HPA{M(Oxidation (M))|F};[Y{I|L}]{I|L}AGHPA{M(Oxidation (M))|F};[Y{I|L}]{I|L}QHPA{M(Oxidation (M))|F};{I|L}Y{I|L}[YG]{[NV]|[RG]}{M(Oxidation (M))|F};{I|L}YG[Y{I|L}]{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]A{I|L}GHPA{M(Oxidation (M))|F};[Y{I|L}]GH[{I|L}A]PA{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L}GHPA{M(Oxidation (M))|F} 8.943;8.005;6.9924;6.7961;6.1401;6.0368;6.0368;5.6801;4.9278;4.3858 -;+;-;+;-;-;-;-;-;- + 277 + NaN NaN 282231.1 NaN 8199 2821 11021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11023 52.782 NaN 715400 35 0 60712 0.261 + 29353 TYPIKDVYP 9 98 548.2875667962614 1094.5605806593228 2 548.7869873046875 MULTI HCD FTMS 0 0 0 11021 241122.796875 0.46567372124139755 9 -0.202850341796875 2 Unmodified _TYPIKDVYP_ L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|52|3|sense 22.736283301280096 0.1639198954644489 2 [YT]{I|L}PE{M(Oxidation (M))|F}VN{I|L} 9 6 + 48.408 0 0 4.4226 4.4226 87.483 0 0 0 16.07795711453391 0.9931724579825385 0.9931724579825385 11.760912590556806 0 1.1989700043360187 1.6989700043360187 0.25 0.3494850021680094 [YT]{I|L}PE{M(Oxidation (M))|F}VN{I|L};[YT]{I|L}PET{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[YT]{I|L}PE{M(Oxidation (M))|F}VGG{I|L};[YT]{I|L}SRPC(Carbamidomethyl (C))[KA];[YT]{I|L}PETP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YT]{I|L}PY[WP]R;[YT]{I|L}S[VG]KSP[SG];[KT]D{M(Oxidation (M))|F}EP{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}S[VG]P{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}SRP[CG][KA] 4.4226;3.3481;3.262;3.1305;3.0899;2.9537;2.6593;2.5277;2.3162;2.2892 -;-;-;-;-;-;-;-;-;- 1895 NaN NaN 195684.5 NaN 8200 2821 11021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11024 52.786 NaN 346580 35 0 24762 0.261 + 22839 QYLRVETQF 9 76 592.3094709776122 1182.6043890220244 2 592.3106079101562 MULTI HCD FTMS 0 0 0 11021 109303.7890625 0.4928153892953038 -2 0.04578399658203125 3 Unmodified _QYLRVETQF_ ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 99.75527289724121 0.004270341300239591 2 [{M(Oxidation (M))|F}E]KRVETQ{M(Oxidation (M))|F} 9 3 + 47.303 0 0 3.9999 3.9999 85.6 0 0 0 6.759168340522756 28.306391935354004 6.759168340522756 9.208187539523749 0 1.0994850021680094 0 1.1989700043360187 1.6861818737241734 [{M(Oxidation (M))|F}E]KRVETQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KRVET[AG]{M(Oxidation (M))|F} 3.9999;3.2212 -;- 183 NaN NaN 133118.2 NaN 8201 2821 11021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11025 52.789 NaN 139970 35 0 16291 0.261 -1 IPMDPEHVEL 10 62 598.2868607271474 1194.5591685210948 2 598.28662109375 MULTI HCD FTMS 0 0 0 11021 51102.33984375 0.34165495015026637 -7 0.16360092163085938 4 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 16.149105407346934 0.3600587335443843 2 VE{I|L} 3 -1 26.198 0 0 2.1931 0 0 835.3543568341812 0 835.3543568341812 0 14.208187539523749 0 0 0 0 0 0 0 VE{I|L} 2.1931 + + 30 NaN NaN 115318.7 NaN 8202 2821 11021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11026 52.792 NaN 45210 35 0 5336.4 0.264 + -1 RWLEEQCRM 9 34 436.5373004901319 NaN 0 436.5379333496094 PEAK HCD FTMS 0 0 0 11021 7515.48583984375 0.3758176358035043 -1 0.032871246337890625 5 Carbamidomethyl (C) _RWLEEQC(Carbamidomethyl (C))RM_ REV__ENST00000414613.1_1_2:61164276-61164498:-|nuORF 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89901.9 NaN 8203 2821 11021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11028 52.797 NaN 1915300 35 0 408060 0.327 + 22890 QYPGRSLVF 9 82 533.787781849045 1065.56101076489 2 533.7879638671875 MULTI HCD FTMS 0 0 0 11027 967429.125 0.9232523648891464 1 -0.03621673583984375 1 Unmodified _QYPGRSLVF_ ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 82.5293158979368 0.005033931517079822 2 QYPGR{[TV]|[{I|L}S]}V{M(Oxidation (M))|F} 9 0 + 51.894 0 0 4.8701 4.8701 84.092 0 0 0 25.44076863834278 16.0603778752995 16.0603778752995 4.771212547196626 0 1.1861818737241734 1.3979400086720375 0.2742275032520141 0 + + QYPGR{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};QYGPR{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};[NS]{I|L}{I|L}[H{I|L}]P{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4.8701;4.4224;0.32213 +;-;- + 208 + NaN NaN 370798.2 NaN 8204 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11029 52.802 NaN 533290 35 0 52157 0.261 + 32366 VYVQHPITF 9 75 552.2969617033621 1102.579370473524 2 552.2977905273438 MULTI HCD FTMS 0 0 0 11027 214770.234375 0.6964889804076205 3 -0.08197402954101562 2 Unmodified _VYVQHPITF_ ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF 99.75527289724121 0.004270341300239591 2 VYVQHP{I|L}T 8 1 93.952 0 0 8.5211 0 0 0 162.0557802789672 162.0557802789672 72.26911912748342 0 0 0 0 2.853917193908117 2 0.9802046884880937 0.3494850021680094 + VYVQHP{I|L}T 8.5211 + + 977 + NaN NaN 176700.5 NaN 8205 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11030 52.805 NaN 489890 35 0 36756 0.261 + 9082 HPFFKDMSL 9 76 561.2758696317486 1120.5371863302971 2 561.2764892578125 MULTI HCD FTMS 0 0 0 11027 273954.9375 1 0 0 3 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 43.77239144664712 0.04802738721622131 2 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]AMS{I|L} 10 3 + 44.588 0 0 3.9792 3.9792 81.198 0 0 0 23.48767215588211 9.38039076304328 9.38039076304328 0.5115252244738144 0 0.7742275032520141 0 0.8921590589602532 0 HP{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]AMS{I|L};HP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}MS{I|L};H{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[TA]AMS{I|L};H{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}MS{I|L};H{M(Oxidation (M))|F}D{I|L}N{I|L}{M(Oxidation (M))|F}C{I|L};HP{M(Oxidation (M))|F}[QT][Y{I|L}]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VS][YR]{M(Oxidation (M))|F}C{I|L};HP{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA][VS]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}][QT]{M(Oxidation (M))|F}C{I|L};{[TV]|[{I|L}S]}[YG][YR]{M(Oxidation (M))|F}C{I|L} 3.9792;3.9335;3.031;2.9853;2.3816;2.3473;2.2716;2.2626;2.1851;2.1145 -;+;-;-;-;-;-;-;-;- + 1686 + NaN NaN 180176.2 NaN 8206 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11031 52.809 NaN 862890 35 0 253240 0.263 + 13356 KYMPNVKVAVF 11 67 432.57729833547614 1294.7100656066284 3 432.5773620605469 MULTI HCD FTMS 0 0 0 11027 178064.75 0.7275285975582391 -1 0.01964569091796875 4 Unmodified _KYMPNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 31.26834338654808 0.19318467762437158 2 AV{M(Oxidation (M))|F} 3 8 35.445 0 0 2.7377 0 0 959.525397646794 0 959.525397646794 0 23.455612550363796 0 0 0 0.9247425010840047 0 0 0 + AV{M(Oxidation (M))|F} 2.7377 + + 20 NaN NaN 219165.5 NaN 8207 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11032 52.812 NaN 795730 35 0 127700 0.261 + 33447 YGSRLDYFQ 9 79 574.7721624015368 1147.5297718698735 2 574.7721557617188 MULTI HCD FTMS 0 0 0 11027 156868.9375 0.776600944658624 -13 0.3277015686035156 5 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 W{M(Oxidation (M))|F}TSVS{[DS]|[MA]|[CV]|TT} 8 8 53.682 0 0 4.6781 0 0 220.08531592017818 0 220.08531592017818 0 42.497906580286795 0 0 0 0.9247425010840047 0 1.8851518780601921 0 W{M(Oxidation (M))|F}TSVS{[DS]|[MA]|[CV]|TT} 4.6781 - 169 + NaN NaN 206988.5 NaN 8208 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11033 52.815 NaN 689880 35 0 41047 0.261 -1 YYLHVQSML 9 100 585.2863874850234 1168.5582220368467 2 585.301025390625 MULTI HCD FTMS 0 0 0 11027 58216.109375 0.8385015706864019 -4 0.08498382568359375 6 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ ENSG00000176994|ENST00000406438|SMCR8 32.78568957990786 0.09846250359632436 2 MQN{I|L}S[H{I|L}]Q{M(Oxidation (M))|F} 9 -1 39.659 0 0 3.3938 0 0 52.034513153202916 0 52.034513153202916 0 10.87604571257021 0 0 0 0 0 0 0.6549471895720985 MQN{I|L}S[H{I|L}]Q{M(Oxidation (M))|F} 3.3938 - 1694 + NaN NaN 191003.1 NaN 8209 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11034 52.819 NaN 401400 35 0 19682 0.261 + 13357 KYMPNVKVAVF 11 68 648.3622759491968 1294.7099989651936 2 648.3619995117188 MULTI HCD FTMS 0 0 0 11027 103077.8984375 0.9298081401449599 -2 0.052516937255859375 7 Unmodified _KYMPNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 61.60191391372663 0.033776152178474975 2 KVAV{M(Oxidation (M))|F} 5 6 39.909 0 0 3.0825 0 0 732.3626950349283 0 732.3626950349283 0 4.463950151760656 0 0 0 0.8494850021680094 0 0 0.4247425010840047 + KVAV{M(Oxidation (M))|F} 3.0825 + + 58 NaN NaN 146994.8 NaN 8210 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11035 52.822 NaN 294320 35 0 35597 0.264 + 707 APYSVDQSL 9 52 490.2400689395087 978.4655849458175 2 490.23974609375 MULTI HCD FTMS 0 0 0 11027 106461.6015625 0.6235485553091943 -3 0.0654296875 8 Unmodified _APYSVDQSL_ ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP 72.96794272382148 0.008127836904478181 2 MSVDQS{I|L} 7 3 63.748 0 0 6.5151 0 0 200.11598403144689 0 200.11598403144689 0 57.80548965182966 0 0 0 1.8494850021680094 0 0.7742275032520141 0 MSVDQS{I|L} 6.5151 - 156 NaN NaN 134697.4 NaN 8211 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11036 52.825 NaN 478440 35 0 74879 0.261 -1 QYMKIISSF 9 85 566.7891191195193 1131.5636853058386 2 566.7891845703125 MULTI HCD FTMS 0 0 0 11027 57233.8671875 0.6786544513957377 -11 0.26861572265625 9 Oxidation (M) _QYM(Oxidation (M))KIISSF_ ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF 25.399314129420986 0.14091189997036632 2 H{I|L}V{[TV]|[{I|L}S]}{I|L}SS{M(Oxidation (M))|F} 9 -1 36.486 0 0 3.2244 0 0 130.01474839353233 0 130.01474839353233 0 28.414033462692515 0 0 0 0.3494850021680094 0 0.6694451763165201 0 H{I|L}V{[TV]|[{I|L}S]}{I|L}SS{M(Oxidation (M))|F} 3.2244 - 229 + NaN NaN 158384 NaN 8212 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11037 52.829 NaN 265190 35 0 52368 0.261 + 3185 ECLFYPALW 9 66 571.275040666067 1140.5355283989338 2 571.2896728515625 MULTI HCD FTMS 0 0 0 11027 6305.8369140625 0.27644985777158154 3 -0.08197402954101562 10 Unmodified _ECLFYPALW_ ENSG00000165355|ENST00000298097|FBXO33 9.347437153973935 0.2795965555214564 2 QKV{M(Oxidation (M))|F}A{I|L}W 7 5 35.79 0 0 3.138 0 0 250.06761227542648 0 250.06761227542648 0 13.57133065319335 0 0 0 0 0 0 0.3252574989159953 QKV{M(Oxidation (M))|F}A{I|L}W 3.138 - 323 + NaN NaN 128663.5 NaN 8213 2822 11027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11039 52.834 NaN 2787900 35 0 282690 0.327 + 2569 DTIEIITDR 9 99 538.284932223608 1074.555311514016 2 538.28515625 MULTI HCD FTMS 0 0 0 11038 1144389.5 0.6739894390763598 2 -0.045757293701171875 1 Unmodified _DTIEIITDR_ ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 176.4269993864032 3.292532597148328E-10 2 DT{I|L}E{I|L}{I|L}TDR 9 0 + 125.11 0 0 11.643 11.643 98.102 0 0 0 85.76803242663607 14.09256854528806 14.09256854528806 27.146428921367047 0 2.9604093769761874 1.6989700043360187 1.5941876774005248 0 + + DT{I|L}E{I|L}{I|L}TDR;{[QN]|[E{I|L}]|[KN]}SE{I|L}{I|L}TDR;{[ES]|[DT]|[{I|L}C]}{I|L}E{I|L}{I|L}TDR;{[QN]|[E{I|L}]|[KN]}DT{I|L}{I|L}TDR;{[QN]|[E{I|L}]|[KN]}TD{I|L}{I|L}TDR;[{I|L}T]DE{I|L}{I|L}TDR;[{I|L}T]ED{I|L}{I|L}TDR;{[QN]|[E{I|L}]|[KN]}S[KG]G{I|L}TD[VG];{[QN]|[E{I|L}]|[KN]}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}TDR;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}T{I|L}{I|L}TDR 11.643;9.1165;8.6576;7.7419;7.6608;7.6136;6.1578;5.9859;5.9342;5.7006 +;-;+;-;-;-;-;-;-;- + 3031 + NaN NaN 499225.8 NaN 8214 2823 11038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11040 52.838 NaN 2227200 35 0 543740 0.261 + 15370 LPDERTISL 9 96 522.2902563539793 1042.5659597747585 2 522.290283203125 MULTI HCD FTMS 0 0 0 11038 1405135.125 0.9982366477819166 1 -0.022884368896484375 2 Unmodified _LPDERTISL_ ENSG00000101138|ENST00000217109|CSTF1 121.34585337138759 0.001129813327125052 2 [{I|L}P]DERT{I|L}S{I|L} 9 0 + 102.55 0 0 9.8364 9.8364 91.053 0 0 0 3.793709283484077 14.973024840566467 3.793709283484077 3.793709283484077 0 2.524227503252014 1.6989700043360187 1.6496498648046138 0 + + [{I|L}P]DERT{I|L}S{I|L};{I|L}PDERT{I|L}S{I|L};[{I|L}P]DERTS{I|L}{I|L};[DP]{I|L}ERT{I|L}S{I|L};[{I|L}P]DERST{I|L}{I|L};[DP]{I|L}ERTS{I|L}{I|L};[DP]E{I|L}RT{I|L}S{I|L};[DP]ER{I|L}T{I|L}S{I|L};[DP]E{I|L}RTS{I|L}{I|L};[DP]{I|L}ERST{I|L}{I|L} 9.8364;9.4725;8.8992;8.4301;7.5056;7.4929;7.2881;6.4269;6.3509;6.0993 +;+;-;-;-;-;-;-;-;- + 1720 NaN NaN 434420.8 NaN 8215 2823 11038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11041 52.842 NaN 324480 35 0 30017 0.261 + 9803 HYLYQIAHL 9 73 579.3085829031326 1156.602612873065 2 579.3087158203125 MULTI HCD FTMS 0 0 0 11038 143219.015625 0.46794257274002177 6 -0.12405776977539062 3 Unmodified _HYLYQIAHL_ ENSG00000189091|ENST00000302516|SF3B3 74.42276476219924 0.007657080072768255 2 {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L} 9 0 + 68.624 0 0 5.9333 5.9333 85.246 0 0 0 3.336134377877329 3.336134377877329 3.336134377877329 3.336134377877329 0 2.1549471895720984 1.3979400086720375 0 0.3252574989159953 + + {[WN]|[YH]}{I|L}[YQ]{I|L}AH{I|L};HY{I|L}[YQ]{I|L}AH{I|L};{[WN]|[YH]}{I|L}[YQ]A{I|L}H{I|L};{[WN]|[YH]}{I|L}[QA]{I|L}YH{I|L};{[WN]|[YH]}{I|L}[QA]Y{I|L}H{I|L};[H{I|L}]Y[YQ]{I|L}AH{I|L};[H{I|L}]Y[YQ]A{I|L}H{I|L};{I|L}HY[YQ]{I|L}AH{I|L};[H{I|L}]Y[QA]{I|L}YH{I|L};{[RE]|[WV]}Q[YQ]{I|L}AH{I|L} 5.9333;5.6448;5.3708;4.7372;4.6292;3.5616;2.9992;2.6483;2.3655;2.2989 +;+;-;-;-;-;-;-;-;- + 484 NaN NaN 136273.1 NaN 8216 2823 11038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11042 52.845 NaN 657610 35 0 152660 0.261 + 9832 HYPLTTLRF 9 64 574.3163213368557 1146.6180897405113 2 574.3169555664062 MULTI HCD FTMS 0 0 0 11038 183059.546875 0.4989283258904541 -6 0.13409805297851562 4 Unmodified _HYPLTTLRF_ ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF 12.240655878213236 0.2545997876781172 2 HYP 3 6 46.682 0 0 4.0713 0 0 0 746.4210909479124 746.4210909479124 4.766128101111846 0 0 0 0 0.5 1.6989700043360187 0 0 + HYP 4.0713 + + 242 + NaN NaN 192464.8 NaN 8217 2823 11038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11043 52.848 NaN 558980 35 0 37610 0.261 + 22840 QYLRVETQF 9 82 592.3094709776122 1182.6043890220244 2 592.3090209960938 MULTI HCD FTMS 0 0 0 11038 221794.59375 1 0 0 5 Unmodified _QYLRVETQF_ ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 117.76058876431921 0.001675465467887476 2 [{M(Oxidation (M))|F}E]KRVETQ{M(Oxidation (M))|F} 9 3 + 64.012 0 0 5.4128 5.4128 87.553 0 0 0 12.322508231173913 12.322508231173913 12.322508231173913 9.208187539523749 0 1.8226825097560422 0 1.4291746928241125 2.1861818737241734 [{M(Oxidation (M))|F}E]KRVETQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KRVET[AG]{M(Oxidation (M))|F};[YQ]{I|L}RVETQ{M(Oxidation (M))|F};[QT]VG[KQ]{M(Oxidation (M))|F}TQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[VA]|[{I|L}G]}Q[KS]TQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KA]Q[KS]TQ{M(Oxidation (M))|F};[NP]V[H{I|L}]VETQ{M(Oxidation (M))|F};[RH]T{M(Oxidation (M))|F}[KQ]R[NP];[{M(Oxidation (M))|F}E]KRV[QT]E{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[NV]|[RG]}{M(Oxidation (M))|F}VETQ{M(Oxidation (M))|F} 5.4128;4.6341;4.3708;4.1164;3.8074;3.2164;2.6955;2.2715;2.1021;1.9783 -;-;+;-;-;-;-;-;-;- + 565 NaN NaN 172047.9 NaN 8218 2823 11038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11044 52.852 NaN 104430 35 0 7214.2 0.261 + 31375 VYADQPHIF 9 44 545.2719907098738 1088.5294284865474 2 545.272705078125 MULTI HCD FTMS 0 0 0 11038 25664.814453125 0.06875144771447583 20 -0.417755126953125 6 Unmodified _VYADQPHIF_ ENSG00000100439|ENST00000428304|ABHD4 15.847184025352803 0.2234401846867398 2 [YT]V 3 8 36.695 0 0 3.371 0 0 0 722.3273160200037 722.3273160200037 5.440228147639203 0 0 0 0 0.9247425010840047 2 0 0 [YT]V 3.371 - 32 NaN NaN 105966.6 NaN 8219 2823 11038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11046 52.857 NaN 380700 35 0 57035 0.327 + 1394 AYQDRLAYL 9 61 556.7901645225626 1111.565776111925 2 556.7904052734375 MULTI HCD FTMS 0 0 0 11045 161021.578125 0.7353211982588124 -2 0.059101104736328125 1 Unmodified _AYQDRLAYL_ ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF 43.77239144664712 0.04802738721622131 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}{[NV]|[RG]}{I|L}AY{I|L} 10 2 + 58.135 0 0 5.23 5.23 88.474 0 0 0 10.061668675368622 37.87401551688937 10.061668675368622 11.047575072713158 0 1.75 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}{[NV]|[RG]}{I|L}AY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}{[NV]|[RG]}{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[DA]|[EG]}Y[R{I|L}]Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[R{I|L}]{[C(Carbamidomethyl (C))E]|[WC]}Y{I|L} 5.23;4.2361;2.3474;0.014626 -;-;-;- 217 NaN NaN 150800.9 NaN 8220 2824 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11047 52.861 NaN 207160 35 0 18548 0.261 + 6647 FPLTTESAM 9 59 506.7362287892123 1011.4579046452246 2 506.7361755371094 MULTI HCD FTMS 0 0 0 11045 56135.48046875 0.3994332431181507 -11 0.2719230651855469 2 Oxidation (M) _FPLTTESAM(Oxidation (M))_ ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF 68.08070601005525 0.009709267492204555 2 TTESA{M(Oxidation (M))|F} 6 3 61.406 0 0 6.071 0 0 357.2038746564469 0 357.2038746564469 0 44.41630954681237 0 0 0 2.4049471895720984 0 0.4247425010840047 0 + TTESA{M(Oxidation (M))|F} 6.071 + + 78 NaN NaN 121787.2 NaN 8221 2824 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11048 52.865 NaN 210490 35 0 75476 0.261 + 16043 LPSEEDPAL 9 48 485.7400576665964 969.4655623999928 2 485.7398376464844 MULTI HCD FTMS 0 0 0 11045 111478.0859375 0.9447979120840776 -1 0.022884368896484375 3 Unmodified _LPSEEDPAL_ ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 20.453626601364224 0.18364154288633264 2 DPA{I|L} 4 5 46.186 0 0 4.764 0 0 555.2540760724625 0 555.2540760724625 0 38.22682509756042 0 0 0 1.4247425010840047 0 0 0 + DPA{I|L} 4.764 + + 22 NaN NaN 120956.5 NaN 8222 2824 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11049 52.868 NaN 281800 35 0 32629 0.261 + 20792 PHDTPPPVSSM 11 62 582.7696369659596 NaN 0 582.76953125 PEAK HCD FTMS 0 0 0 11045 52480.578125 0.2373420543592905 19 -0.3948707580566406 4 Unmodified _PHDTPPPVSSM_ MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant 15.248480904072842 0.2934134091661347 2 SVS 3 9 28.02 0 0 2.4082 0 0 236.07946974922032 651.2874827997535 887.3669525489738 0 0 0 0 0 1.805462187404089 0 0.3054621874040891 0 SVS 2.4082 - 86 NaN NaN 127276 NaN 8223 2824 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11050 52.871 NaN 277240 35 0 32242 0.261 -1 RKMRNEEF 8 68 563.275893751361 1124.5372345695218 2 563.7924194335938 MULTI HCD FTMS 0 0 0 11045 11894.5498046875 0.4043395525395605 -3 0.07874679565429688 5 Oxidation (M) _RKM(Oxidation (M))RNEEF_ tr|U7T0X0|U7T0X0_FUSNUPutativeseptationproteinSpoVGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=spoVGPE=3SV=1 14.581692164780916 0.48650662947107914 2 WAVYEE{M(Oxidation (M))|F} 7 -1 33.422 0 0 2.9721 0 0 182.1086644698775 0 182.1086644698775 0 9.89023842381954 0 0 0 0 0 0.8252574989159953 0 WAVYEE{M(Oxidation (M))|F} 2.9721 - 168 + NaN NaN 134503.5 NaN 8224 2824 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11051 52.874 NaN 144240 35 0 11962 0.261 -1 LCPGLTEEM 9 62 525.2355729266282 1048.4565929200562 2 525.2362670898438 MULTI HCD FTMS 0 0 0 11045 24052.294921875 0.3405410163223752 -5 0.12453079223632812 6 Carbamidomethyl (C) _LC(Carbamidomethyl (C))PGLTEEM_ ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-2|RAD51D;nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;nc|ENSG00000185379|O75771-5|RAD51D;nc|ENSG00000185379|O75771-6|RAD51D;nc|ENSG00000185379|O75771-7|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D 7.910154910731844 0.2910521888787154 2 S{[CT]|[{M(Oxidation (M))|F}G]}M 4 -1 20.177 0 0 1.9245 0 0 608.3158796750369 0 608.3158796750369 0 6.109243748081781 0 0 0 1 0 0 0 S{[CT]|[{M(Oxidation (M))|F}G]}M 1.9245 - 62 NaN NaN 110991.5 NaN 8225 2824 11045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11053 52.879 NaN 1370200 35 0 264110 0.327 + 15499 LPDMVVSHL 9 88 513.768193570899 NaN 0 513.7681274414062 PEAK HCD FTMS 0 0 0 11052 600742.4375 0.4901698093617289 11 -0.23529434204101562 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 123.45060196383646 3.899424348984226E-09 2 PD{M(Oxidation (M))|F}VVS 6 3 65.87 0 0 6.423 0 0 113.08525944917137 265.1301668756469 378.2154263248183 0 0 0 0 0 2.399649864804614 0 1.3737125054200234 0 + PD{M(Oxidation (M))|F}VVS 6.423 + + 1033 + NaN NaN 299366.7 NaN 8226 2825 11052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11054 52.884 NaN 282410 35 0 46213 0.261 + 35777 YYMKDLPTSF 10 54 640.7970686471028 1279.5795843610056 2 641.2988891601562 MULTI HCD FTMS 0 0 0 11052 67598.2265625 0.5600311064639115 1 -0.02288818359375 2 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 49.52724829834842 0.07950882623896251 2 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 10 0 + 71.387 0 0 5.579 5.579 91.471 0 0 0 10.740312677277188 10.740312677277188 10.740312677277188 29.006375246153908 0 2.3494850021680094 2 0.4247425010840047 0 + + YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[TV]|[{I|L}S]}[MT];YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[CP]|[EA]}[MT] 5.579;3.3121;3.3121 +;-;- + 59 NaN NaN 133733.6 NaN 8227 2825 11052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11055 52.887 NaN 558880 35 0 26900 0.261 + 4496 EYIRSLNQF 9 96 585.3007112465816 1168.5868695599631 2 586.303955078125 MULTI HCD FTMS 0 0 0 11052 95335.828125 1 0 0 3 Unmodified _EYIRSLNQF_ ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF 66.45667989310934 0.010234776021261575 2 {I|L}SNQ{M(Oxidation (M))|F} 5 4 41.662 0 0 3.5651 0 0 561.2890923156257 0 561.2890923156257 0 4.817861834166564 0 0 0 0.8441876774005248 0 0 0.7302046884880937 {I|L}SNQ{M(Oxidation (M))|F} 3.5651 - 2087 + NaN NaN 175809.3 NaN 8228 2825 11052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11056 52.891 NaN 220320 35 0 18460 0.262 + 15524 LPDPGFQKI 9 64 507.7847104108693 1013.5548678885386 2 508.3020324707031 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPDPGFQKI_ ENSG00000059378|ENST00000263549|PARP12 11.494710602746466 0.2610445893512368 2 {I|L}PD 3 6 19.157 0 0 1.89 0 0 0 685.3673090950354 685.3673090950354 3.6721376912844086 0 0 0 0 0.5 0 0 0 + {I|L}PD 1.89 + + 56 + NaN NaN 122774.1 NaN 8229 2825 11052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11057 52.894 NaN 174380 35 0 26801 0.261 -1 MPQSMPEYAL 10 42 599.7596458789774 1197.5047388247547 2 600.3333129882812 MULTI HCD FTMS 0 0 0 11052 22068.24609375 0.44807935601874116 -13 0.3310127258300781 5 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 10.799506525563784 0.4100970765206026 2 YA{I|L} 3 -1 36.198 0 0 3.0228 0 0 832.3112660138687 0 832.3112660138687 0 30.713337517843655 0 0 0 1 0 0 0 YA{I|L} 3.0228 + + 15 NaN NaN 108455.4 NaN 8230 2825 11052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11058 52.897 NaN 122170 35 0 13255 0.262 + 16612 LVSTVGIWF 9 62 511.28757032401853 1020.5605877148371 2 511.2889404296875 MULTI HCD FTMS 0 0 0 11052 31759.201171875 0.3404371247661324 11 -0.23529434204101562 6 Unmodified _LVSTVGIWF_ REV__ENSG00000118432|ENST00000369501|CNR1;REV__nc|ENSG00000118432|P21554-2|CNR1;REV__nc|ENSG00000118432|P21554-3|CNR1 8.593279151180031 0.2858735984551981 2 {I|L}P 2 -1 19.464 0 0 1.9072 0 0 0 807.4075552644691 807.4075552644691 4.859856381998782 0 0 0 0 0 0 0 0 {I|L}P 1.9072 - 40 + NaN NaN 103960.4 NaN 8231 2825 11052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11060 52.902 NaN 1046000 35 0 84945 0.327 + 247 AFDVAEREF 9 92 542.258802911905 1082.50305289061 2 542.259033203125 MULTI HCD FTMS 0 0 0 11059 400468.25 1 0 0 1 Unmodified _AFDVAEREF_ ENSG00000133816|ENST00000683283|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-2|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851|MICAL2 107.09958533191995 0.0034159042678574016 2 {[MS]|[{M(Oxidation (M))|F}A]}DVAERE{M(Oxidation (M))|F} 9 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 90.658 2.8432 1.3036 8.3748 8.3748 67.957 0 0 0 0 63.161589538002815 0 0 0 3.1549471895720984 0 1.9634679910804405 0.3054621874040891 + + {[MS]|[{M(Oxidation (M))|F}A]}DVAERE{M(Oxidation (M))|F} 8.3748 + + 2498 + NaN NaN 254191.8 NaN 8232 2826 11059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11061 52.907 NaN 403270 35 0 39787 0.261 + 35961 YYVRAVLHL 9 81 567.3270149163582 1132.6394768995162 2 567.3271484375 MULTI HCD FTMS 0 0 0 11059 120741.25 0.2567329336806921 6 -0.1307525634765625 2 Unmodified _YYVRAVLHL_ ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF 42.09456458481378 0.05572955244001856 2 H{I|L}[W{I|L}]{I|L}SS{M(Oxidation (M))|F} 8 9 41.094 0 0 3.6281 0 0 131.09526966768982 0 131.09526966768982 0 16.555781609639766 0 0 0 0.9247425010840047 0 0.3252574989159953 0 H{I|L}[W{I|L}]{I|L}SS{M(Oxidation (M))|F} 3.6281 - 233 + NaN NaN 161250.6 NaN 8233 2826 11059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11062 52.91 NaN 335210 35 0 75527 0.261 + 5121 FERKKTEL 8 72 525.8007217462326 1049.5868905592652 2 526.2871704101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FERKKTEL_ ENSG00000124532|ENST00000378386|MRS2;nc|ENSG00000124532|Q9HD23-2|MRS2;nc|ENSG00000124532|Q9HD23-4|MRS2 12.531546534597751 0.5015908124873912 2 {M(Oxidation (M))|F}DSKVT{[QN]|[E{I|L}]|[KN]} 8 3 36.165 0 0 3.4456 0 0 112.11415878511555 0 112.11415878511555 0 9.077147547659852 0 0 0 0 0 1.2302046884880937 0.3252574989159953 {M(Oxidation (M))|F}DSKVT{[QN]|[E{I|L}]|[KN]} 3.4456 - 447 + NaN NaN 136077 NaN 8234 2826 11059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11063 52.914 NaN 171300 35 0 33889 0.261 + -1 MSSLHGTREE 10 55 581.7617103330571 1161.508867732914 2 581.7618408203125 MULTI HCD FTMS 0 0 0 11059 89492.8515625 1 0 0 4 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 8.155526934196011 0.43213520406898465 2 SVS{[ES]|[DT]|[{I|L}C]} 5 -1 28.724 0 0 2.473 0 0 654.310350486525 0 654.310350486525 0 23.239087409443187 0 0 0 1 0 0 0 SVS{[ES]|[DT]|[{I|L}C]} 2.473 - 16 NaN NaN 118672.9 NaN 8235 2826 11059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11065 52.919 NaN 970280 35 0 128130 0.327 + 17948 MITDLEERL 9 100 568.2866588488881 1134.5587647645762 2 568.2865600585938 MULTI HCD FTMS 0 0 0 11064 348625.53125 0.42850785924314166 -13 0.3043403625488281 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 110.5527297667825 0.0028521687250969148 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 108.17 0 0 9.5341 9.5341 89.235 0 0 0 19.889917747712644 68.09961765481854 19.889917747712644 0.039237471316297956 0 1.5 2 1.8556270500406937 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}[{I|L}A][NG][TA] 9.5341;9.5307;8.5616;5.6078;4.9648 -;+;-;+;- + 1711 NaN NaN 241357.6 NaN 8236 2827 11064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11066 52.923 NaN 412230 35 0 77718 0.262 + 11109 IYIAGHPAF 9 61 494.7661233973819 987.5176938615638 2 494.7662353515625 MULTI HCD FTMS 0 0 0 11064 140395.265625 0.16443433165555468 7 -0.15704727172851562 2 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 79.93452657146344 0.0058735632865073864 2 {I|L}Y{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F} 9 0 + 76.132 0 0 7.7094 7.7094 87.857 0 0 0 12.755762612236907 2.0289375146764854 2.0289375146764854 2.0289375146764854 0 2.4247425010840047 1.6989700043360187 0 0 + + {I|L}Y{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F};{I|L}Y{I|L}A{[HG]|PP}{M(Oxidation (M))|F}[PA];{I|L}Y{I|L}[HQ][PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F};{I|L}Y{I|L}[HQ]{M(Oxidation (M))|F}[PA];[Y{I|L}]{I|L}[HQ][PA]{M(Oxidation (M))|F} 7.7094;7.5039;6.5471;6.4177;6.3416;5.2554 +;-;-;+;-;- + 252 + NaN NaN 147819.7 NaN 8237 2827 11064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11067 52.927 NaN 318760 35 0 29810 0.261 + 5453 FILEPLFFA 9 80 548.8059129714169 NaN 0 548.7874755859375 PEAK HCD FTMS 0 0 0 11064 10680.591796875 0.5158242188207454 -3 0.061992645263671875 3 Unmodified _FILEPLFFA_ REV__ENSG00000144063|ENST00000272462|MALL 8.593279151180031 0.2536050107310812 2 VD{M(Oxidation (M))|F} 3 -1 18.082 0 0 1.6504 0 0 131.1351242400861 600.2732637994749 731.408388039561 0 0 0 0 0 0 0 0.6109243748081782 0 VD{M(Oxidation (M))|F} 1.6504 - 75 + NaN NaN 153461.6 NaN 8238 2827 11064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11068 52.93 NaN 286210 35 0 29385 0.261 + 10591 IPMDPEHVEL 10 64 598.2868607271474 1194.5591685210948 2 598.2864990234375 MULTI HCD FTMS 0 0 0 11064 75815.0703125 0.5068768699722094 -1 0.016231536865234375 4 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 43.77239144664712 0.11267038882370725 2 {I|L}P{M(Oxidation (M))|F}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}C 7 5 44.69 0 0 3.7411 0 0 0 356.18036829166255 356.18036829166255 28.492304306103332 0 0 0 0 1 1.3979400086720375 0.8807196863200843 0 {I|L}P{M(Oxidation (M))|F}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}C 3.7411 - 171 + NaN NaN 131661.6 NaN 8239 2827 11064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11069 52.933 NaN 69654 35 0 6408.4 0.262 + 5671 FPAAIEHTI 9 44 499.7689431090989 997.5233332849979 2 499.76898193359375 MULTI HCD FTMS 0 0 0 11064 15958.2197265625 0.026774598669153157 17 -0.35912322998046875 5 Unmodified _FPAAIEHTI_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 21.74664581756881 0.17247014374749275 2 VAPE 4 7 30.037 0 0 3.0112 0 0 583.2927113263687 0 583.2927113263687 0 30.037144051603093 0 0 0 0.5 0 0 0 VAPE 3.0112 - 18 NaN NaN 96118.7 NaN 8240 2827 11064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11070 52.937 NaN 195280 35 0 12097 0.261 -1 0 55 594.5536413246632 NaN 0 594.7213134765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.79724 0 0 263.64276378484595 660.3092135065061 923.951977291352 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.79724 - 21 + NaN NaN 122386.9 NaN 8241 2827 11064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11072 52.941 NaN 1309600 35 0 218250 0.327 + 32798 WSKLFIVSS 9 102 533.801530054441 NaN 0 533.7879028320312 PEAK HCD FTMS 0 0 0 11071 31538.685546875 0.6750961463288805 -1 0.022930145263671875 1 Unmodified _WSKLFIVSS_ REV__ENST00000324142.4_1_1:233337898-233388268:-|nuORF;REV__nc|ENSG00000135749|A6NKB5-2|PCNX2 14.838274106304384 0.2220448417561729 2 P 1 -1 5.4846 0 0 0.5147 0 0 291.1503361073068 674.359514603866 965.5098507111729 0 0 0 0 0 0 0 0 0 P 0.5147 - 45 + NaN NaN 288322.6 NaN 8242 2828 11071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11073 52.946 NaN 337540 35 0 21608 0.261 + 9083 HPFFKDMSL 9 64 561.2758696317486 1120.5371863302971 2 561.2760620117188 MULTI HCD FTMS 0 0 0 11071 128332.625 0.46844428565920626 6 -0.13411712646484375 2 Unmodified _HPFFKDMSL_ ENSG00000097046|ENST00000234626|CDC7 16.149105407346934 0.22083165093524068 2 HP{M(Oxidation (M))|F} 3 6 31.198 0 0 2.7842 0 0 0 736.3347486007533 736.3347486007533 18.36696871556164 0 0 0 0 0.5 0 0 0 + HP{M(Oxidation (M))|F} 2.7842 + + 63 + NaN NaN 136242.3 NaN 8243 2828 11071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11074 52.949 NaN 229500 35 0 45649 0.262 + 22543 QSEPGSIAL 9 48 451.23454498976525 900.4545370463305 2 451.2348937988281 MULTI HCD FTMS 0 0 0 11071 119442.5390625 0.8850215723590387 4 -0.09159088134765625 3 Unmodified _QSEPGSIAL_ ENSG00000027697|ENST00000367739|IFNGR1 24.990960013464015 0.14443998892849796 2 {I|L}A{I|L} 3 6 37.747 0 0 4.192 0 0 585.2379224498408 0 585.2379224498408 0 22.289784572998173 0 0 0 1.305462187404089 0 0 0 + {I|L}A{I|L} 4.192 + + 54 NaN NaN 119300 NaN 8244 2828 11071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11075 52.953 NaN 166630 35 0 7081.9 0.261 + -1 GQFCCYCCCC 10 49 595.1551141417361 NaN 0 595.2687377929688 PEAK HCD FTMS 0 0 0 11071 23865.345703125 0.9035175796164309 -5 0.10780715942382812 4 Carbamidomethyl (C) _GQFC(Carbamidomethyl (C))CYCCCC_ REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF 0 0.34018428902965525 2 {I|L}V 2 -1 10.969 0 0 0.9231 0 0 264.8484609312731 708.2792452447874 973.1277061760604 0 0 0 0 0 0 0 0 0 {I|L}V 0.9231 - 11 + NaN NaN 130571.1 NaN 8245 2828 11071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11077 52.958 NaN 745140 35 0 49408 0.327 -1 YYLHVQSML 9 87 585.2863874850234 1168.5582220368467 2 585.301513671875 MULTI HCD FTMS 0 0 0 11076 56468.30859375 0.8133275472750332 3 -0.07534027099609375 1 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ ENSG00000176994|ENST00000406438|SMCR8 32.78568957990786 0.09846250359632436 2 MQN{I|L}S[H{I|L}]Q{M(Oxidation (M))|F} 9 -1 49.288 0 0 4.2179 0 0 52.03472877606425 0 52.03472877606425 0 10.1829479735065 0 0 0 0 0 0 0.7059771852360797 MQN{I|L}S[H{I|L}]Q{M(Oxidation (M))|F} 4.2179 - 1961 + NaN NaN 198833.5 NaN 8246 2829 11076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11078 52.962 NaN 169050 35 0 15854 0.262 + 708 APYSVDQSL 9 44 490.2400689395087 978.4655849458175 2 490.2400817871094 MULTI HCD FTMS 0 0 0 11076 106179.703125 0.6218974683363588 4 -0.09492111206054688 2 Unmodified _APYSVDQSL_ ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP 47.748688679222035 0.03472022231463587 2 SVDQS{I|L} 6 3 51.15 0 0 5.2276 0 0 331.15205580879064 0 331.15205580879064 0 51.15024697793565 0 0 0 1 0 0.7059771852360797 0.4247425010840047 + SVDQS{I|L} 5.2276 + + 24 NaN NaN 129989.5 NaN 8247 2829 11076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11079 52.966 NaN 357480 35 0 64427 0.261 -1 YCRNVQDF 8 62 551.2422035660203 1100.4698541988405 2 551.7620849609375 MULTI HCD FTMS 0 0 0 11076 13491.8662109375 0.3438366020489327 16 -0.3394927978515625 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))RNVQDF_ ENSG00000125703|ENST00000317868|ATG4C 16.942295170755138 0.46913822049235215 2 ANE{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F} 8 -1 49.245 0 0 4.4749 0 0 164.0401501563329 0 164.0401501563329 0 43.738350322034236 0 0 0 0.7059771852360797 0 0.3252574989159953 0.3807196863200844 ANE{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F} 4.4749 - 276 + NaN NaN 138811.2 NaN 8248 2829 11076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11080 52.969 NaN 311990 35 0 16062 0.261 + -1 VSMWFLFYP 9 65 603.2914831701227 NaN 0 603.3051147460938 PEAK HCD FTMS 0 0 0 11076 10315.5068359375 0.8331597958249249 -1 0.0162506103515625 4 Oxidation (M) _VSM(Oxidation (M))WFLFYP_ REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF 5.230669730166228 0.26989974671959066 2 E[KG]DMAAV 8 -1 32.256 0 0 2.6778 0 0 101.02416112729982 299.1474703424438 400.1716314697436 0 0 0 0 0 0 0 0.3494850021680094 0 E[KG]DMAAV 2.6778 - 189 + NaN NaN 133759.7 NaN 8249 2829 11076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11081 52.972 NaN 54737 35 0 10230 0.264 + -1 MLVQPPELLLF 11 32 439.2483775018127 1314.723303105638 3 439.24884033203125 MULTI HCD FTMS 0 0 0 11076 5310.1572265625 0.1252243056703184 1 -0.022930145263671875 5 Oxidation (M) _M(Oxidation (M))LVQPPELLLF_ REV__ENST00000334983.9_1_3:32495998-32496052:+|nuORF 1.214830529360525 0.41359283248740725 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.1778 0 0 1149.6446115546598 0 1149.6446115546598 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1778 + + 2 + NaN NaN 95674.7 NaN 8250 2829 11076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11082 52.976 NaN 90067 35 0 6800 0.261 + 10838 ITYFVSDI 8 46 479.24798936385855 NaN 0 479.24737548828125 PEAK HCD FTMS 0 0 0 11076 19987.98828125 0.39468747652242303 3 -0.07534027099609375 6 Unmodified _ITYFVSDI_ REV__ENSG00000197938|ENST00000355273|OR5H2 30.224811164608877 0.37844742603322723 2 SDV 3 -1 21.555 0 0 2.2535 0 0 131.09276720252336 521.2378974842966 652.33066468682 0 0 0 0 0 0.6861818737241735 0 0 0 SDV 2.2535 - 35 + NaN NaN 97441 NaN 8251 2829 11076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11084 52.981 NaN 737330 35 0 162940 0.327 + 15371 LPDERTISL 9 79 522.2902563539793 1042.5659597747585 2 522.2904052734375 MULTI HCD FTMS 0 0 0 11083 457377.625 0.3249303921218641 8 -0.1697998046875 1 Unmodified _LPDERTISL_ ENSG00000101138|ENST00000217109|CSTF1 69.33821966488729 0.009302356455414924 2 [{I|L}P]DERT{I|L}S{I|L} 9 0 + 82.379 0 0 7.9016 7.9016 92.691 0 0 0 14.661351862422293 14.973024840566467 14.661351862422293 9.330984399557423 0 1.8494850021680094 1.5228787452803376 0.6861818737241735 0.2742275032520141 + + [{I|L}P]DERT{I|L}S{I|L};[{I|L}P]DERTS{I|L}{I|L};[DP]{I|L}ERT{I|L}S{I|L};[{I|L}P]DERST{I|L}{I|L};[DP]E{I|L}RT{I|L}S{I|L};[DP]{I|L}ERTS{I|L}{I|L};[DP]{I|L}ERST{I|L}{I|L};[DP]E{I|L}RTS{I|L}{I|L};[DP]ER{I|L}T{I|L}S{I|L};[DP]E{I|L}RST{I|L}{I|L} 7.9016;7.0066;6.4953;6.4291;5.7349;5.6003;5.0228;4.8399;4.7977;4.2624 +;-;-;-;-;-;-;-;-;- + 691 NaN NaN 197261.8 NaN 8252 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11085 52.985 NaN 1061100 35 0 155530 0.261 + 15559 LPDQPPYHL 9 85 540.2796777783375 1078.5448026234749 2 540.27978515625 MULTI HCD FTMS 0 0 0 11083 489212.25 0.5683436202898645 -8 0.18320465087890625 2 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 126.56589448801843 0.0008132384440316759 2 {I|L}PDQ[TA]{I|L}Q 8 5 83.743 0 0 7.7645 0 0 0 209.05666528873283 209.05666528873283 58.98321516755115 0 0 0 0 0.805462187404089 1.5228787452803376 1.3829131673969606 0.8494850021680094 {I|L}PDQ[TA]{I|L}Q 7.7645 - 2634 + NaN NaN 240233.4 NaN 8253 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11086 52.989 NaN 979860 35 0 284580 0.261 + 9833 HYPLTTLRF 9 73 574.3163213368557 1146.6180897405113 2 574.3167114257812 MULTI HCD FTMS 0 0 0 11083 325043.71875 0.8859058224801755 1 -0.026195526123046875 3 Unmodified _HYPLTTLRF_ ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF 17.11289562659939 0.2125047172822487 2 {[WN]|[YH]}PRTSVS 8 5 50.553 0 0 4.4088 0 0 0 216.1504203212278 216.1504203212278 30.53009725027536 0 0 0 0 0.8182503180159344 1.6989700043360187 0 0.5994850021680094 {[WN]|[YH]}PRTSVS 4.4088 - 323 NaN NaN 245457 NaN 8254 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11087 52.992 NaN 213270 35 0 36681 0.261 + 27313 SYQKVMALW 9 67 571.2892311710605 1140.5639094089208 2 571.2899780273438 MULTI HCD FTMS 0 0 0 11083 112360.6015625 0.556278811539654 4 -0.09493637084960938 4 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 57.72198328787511 0.020768266150574023 2 {I|L}{M(Oxidation (M))|F}A{I|L}W 5 5 49.301 0 0 4.3225 0 0 492.2257252423844 0 492.2257252423844 0 26.854033694403668 0 0 0 1.6549471895720984 0 0 0 {I|L}{M(Oxidation (M))|F}A{I|L}W 4.3225 - 196 NaN NaN 130974.1 NaN 8255 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11088 52.995 NaN 214950 35 0 14854 0.261 + 22841 QYLRVETQF 9 65 592.3094709776122 1182.6043890220244 2 592.3091430664062 MULTI HCD FTMS 0 0 0 11083 117969.84375 0.531887823573247 7 -0.15360641479492188 5 Unmodified _QYLRVETQF_ ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085|ACACA 41.95555342248728 0.056367691549927025 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[W{I|L}][{I|L}T]TQ{M(Oxidation (M))|F} 9 4 + 37.359 0 0 3.1591 3.1591 88.947 0 0 0 2.956349637772753 21.244843410701794 2.956349637772753 37.35917160486836 0 0.9247425010840047 0 0.805462187404089 1.4247425010840047 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[W{I|L}][{I|L}T]TQ{M(Oxidation (M))|F} 3.1591 - 129 NaN NaN 126630.1 NaN 8256 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11089 52.999 NaN 369910 35 0 27755 0.261 + 32367 VYVQHPITF 9 84 552.2969617033621 1102.579370473524 2 552.797607421875 MULTI HCD FTMS 0 0 0 11083 66354.234375 0.25301107698841185 11 -0.24184799194335938 6 Unmodified _VYVQHPITF_ ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}DV[HQ]{I|L}VV{M(Oxidation (M))|F} 9 5 + 26.881 0 0 2.438 2.438 87.966 0 0 0 8.809283297845312 3.1749171159178182 3.1749171159178182 26.88125192985375 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}DV[HQ]{I|L}VV{M(Oxidation (M))|F} 2.438 - 550 + NaN NaN 153546.8 NaN 8257 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11090 53.002 NaN 337470 35 0 16228 0.261 -1 LLPSVMRQR 9 72 579.3270383184047 NaN 0 579.3079223632812 PEAK HCD FTMS 0 0 0 11083 8147.06689453125 0.6864574637860335 -1 0.022930145263671875 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LLPSVM(Oxidation (M))RQR_ ENST00000479713.1_1_Y:15591430-15591511:-|nuORF 7.289230182591677 0.2599242500475609 2 H{I|L}{M(Oxidation (M))|F}{I|L} 4 -1 12.423 0 0 1.074 0 0 131.13152614582765 512.2276095025999 643.3591356484276 0 0 0 0 0 0 0 0 0 H{I|L}{M(Oxidation (M))|F}{I|L} 1.074 - 89 + NaN NaN 134826.8 NaN 8258 2830 11083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11092 53.007 NaN 397320 35 0 69276 0.327 -1 RKMRNEEF 8 63 563.275893751361 1124.5372345695218 2 563.7928466796875 MULTI HCD FTMS 0 0 0 11091 11525.373046875 0.3917898749550347 3 -0.0687408447265625 1 Oxidation (M) _RKM(Oxidation (M))RNEEF_ tr|U7T0X0|U7T0X0_FUSNUPutativeseptationproteinSpoVGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=spoVGPE=3SV=1 14.581692164780916 0.48650662947107914 2 WAVYEE{M(Oxidation (M))|F} 7 -1 46.917 0 0 4.1721 0 0 182.10920830174683 0 182.10920830174683 0 18.500707439735322 0 0 0 0 0 1.1747425010840047 0 WAVYEE{M(Oxidation (M))|F} 4.1721 - 246 + NaN NaN 150243.5 NaN 8259 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11093 53.011 NaN 311680 35 0 38543 0.261 + 1395 AYQDRLAYL 9 65 556.7901645225626 1111.565776111925 2 556.7904052734375 MULTI HCD FTMS 0 0 0 11091 95115.2265625 0.434353228821927 5 -0.10786819458007812 2 Unmodified _AYQDRLAYL_ ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF 36.506200033944 0.08138327636155518 2 EQC{I|L} 4 7 37.524 0 0 3.3757 0 0 620.3511830060562 0 620.3511830060562 0 8.111206103324733 0 0 0 0.4247425010840047 0 0.7614393726401688 0 EQC{I|L} 3.3757 - 80 NaN NaN 144358.9 NaN 8260 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11094 53.015 NaN 245550 35 0 26779 0.261 + 6648 FPLTTESAM 9 74 506.7362287892123 1011.4579046452246 2 506.7364807128906 MULTI HCD FTMS 0 0 0 11091 86524.7890625 0.6156690352830938 -4 0.08830642700195312 3 Oxidation (M) _FPLTTESAM(Oxidation (M))_ ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF 100.37149154755038 0.004254194004462789 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TTESA{M(Oxidation (M))|F} 9 0 + 75.315 0 0 7.4462 7.4462 89.143 0 0 0 4.137342758552691 58.32563782453214 4.137342758552691 6.519862825870675 0 2.5752574989159953 0 0.6989700043360187 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TTESA{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVTESA{M(Oxidation (M))|F};[YV][VP]TESA{M(Oxidation (M))|F};[YV]{I|L}[PS]ESA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}T[WM]A{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV[WM]A{M(Oxidation (M))|F};[YV]{I|L}T[DP]SA{M(Oxidation (M))|F};G{[YC]|[HE]}ETVV{[QN]|[E{I|L}]|[KN]} 7.4462;6.8016;4.9203;4.4486;4.1625;3.5179;3.494;2.4547 +;-;-;-;-;-;-;- + 294 NaN NaN 126914.6 NaN 8261 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11095 53.018 NaN 360520 35 0 15320 0.261 + -1 YHKLKCPLV 9 83 579.3270383184047 NaN 0 579.3088989257812 PEAK HCD FTMS 0 0 0 11091 11868.2763671875 1 0 0 4 Carbamidomethyl (C) _YHKLKC(Carbamidomethyl (C))PLV_ REV__ENSG00000115290|ENST00000263915|GRB14;REV__nc|ENSG00000115290|Q14449-2|GRB14 4.75600775471527 0.27219989241163056 2 TN{M(Oxidation (M))|F}{I|L} 4 -1 15.499 0 0 1.34 0 0 166.18060521089757 512.2252291315061 678.4058343424038 0 0 0 0 0 0 0 0 0.3807196863200844 TN{M(Oxidation (M))|F}{I|L} 1.34 - 134 + NaN NaN 148915.9 NaN 8262 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11096 53.021 NaN 281380 35 0 76082 0.261 + 7438 FVSYWVTSA 9 56 530.2609612828534 1058.5073696325067 2 530.2604370117188 MULTI HCD FTMS 0 0 0 11091 65015.76171875 0.1454865099219773 -19 0.4584388732910156 5 Unmodified _FVSYWVTSA_ REV__ENST00000481203.1_1_3:100463662-100466999:+|nuORF 7.910154910731844 0.2910521888787154 2 G 1 -1 7.4743 0 0 0.70611 0 0 812.3707557182473 186.09736047916252 998.4681161974098 0 0 0 0 0 0.5 0 0 0 G 0.70611 - 34 + NaN NaN 126224.4 NaN 8263 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11097 53.025 NaN 218520 35 0 12062 0.261 + 13358 KYMPNVKVAVF 11 45 648.3622759491968 1294.7099989651936 2 648.3607788085938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KYMPNVKVAVF_ ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B 4.897010918128616 0.3974440401582579 2 KYM 3 8 26.198 0 0 2.0235 0 0 0 869.4885347955686 869.4885347955686 26.197887582883936 0 0 0 0 0 0 0 0 + KYM 2.0235 + + 3 + NaN NaN 122041.6 NaN 8264 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11098 53.028 NaN 192440 35 0 9684 0.262 + 32362 VYVQELQKL 9 68 560.3240914342035 1118.633629935207 2 560.8272094726562 MULTI HCD FTMS 0 0 0 11091 28568.64453125 0.5674732851436535 -5 0.1045379638671875 7 Unmodified _VYVQELQKL_ ENSG00000102189|ENST00000322349|EEA1 6.2057823575117 0.30397260197431997 2 {M(Oxidation (M))|F}S[NP]N{I|L} 6 8 14.698 0 0 1.3139 0 0 131.1875381495468 312.1198824518188 443.3074206013656 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}S[NP]N{I|L} 1.3139 - 63 + NaN NaN 128202.9 NaN 8265 2831 11091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11100 53.033 NaN 581290 35 0 50413 0.327 + 24141 RYCVQLSQI 9 76 555.2924751135089 1108.5703972938177 2 555.2918090820312 MULTI HCD FTMS 0 0 0 11099 109432.8125 0.27967356176981367 -7 0.1536407470703125 1 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 55.50274090549119 0.023872834264864425 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RMQ{I|L}SQ{I|L} 9 3 + 73.852 0 0 6.6619 6.6619 89.674 0 0 0 7.1206675557589705 62.61493421710526 7.1206675557589705 9.208187539523749 0 2.079689690656103 1.2218487496163564 0.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RMQ{I|L}SQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RMQ{I|L}S[AG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RM[AG]{I|L}SQ{I|L};[HV][PG]MQ{I|L}SQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RMQK{[CP]|[EA]}{I|L};[HV][PG]M[AG]{I|L}SQ{I|L};[Q{I|L}][RN][HN]SQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S[KC][KG]SQ{I|L} 6.6619;5.8313;5.8313;4.19;3.4816;3.3633;3.098;2.1225 -;-;-;-;-;-;-;- 299 NaN NaN 170043.1 NaN 8266 2832 11099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11101 53.037 NaN 337350 35 0 17804 0.261 + 6014 FPDRIMNTF 9 76 578.7762597744046 1155.537966615609 2 578.7767944335938 MULTI HCD FTMS 0 0 0 11099 129886.6875 0.22223345052473065 -16 0.3597068786621094 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 57.107585691075435 0.021627766313179933 2 ATR{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 7 4 54.951 0 0 4.7555 0 0 300.13548476386876 0 300.13548476386876 0 29.985482798013486 0 0 0 1.4698565171985374 0 0 0.4247425010840047 ATR{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4.7555 - 202 NaN NaN 145679.1 NaN 8267 2832 11099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11102 53.041 NaN 405580 35 0 87936 0.262 + 3153 EASPVEPQL 9 63 485.2480207859445 968.481488638689 2 485.2481384277344 MULTI HCD FTMS 0 0 0 11099 121692.3125 0.17708079439650123 -7 0.1536407470703125 3 Unmodified _EASPVEPQL_ ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 52.268347100219714 0.028397529699942435 2 {M(Oxidation (M))|F}PQ{I|L} 4 6 20.618 0 0 2.1288 0 0 465.22507886815305 0 465.22507886815305 0 16.01342204748164 0 0 0 0.7429928190999391 0 0 0 {M(Oxidation (M))|F}PQ{I|L} 2.1288 - 43 NaN NaN 154166 NaN 8268 2832 11099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11103 53.044 NaN 124470 35 0 27718 0.261 + 23508 RNACEMCF 8 39 487.18798090138705 972.3614088695741 2 487.1880798339844 MULTI HCD FTMS 0 0 0 11099 59338.13671875 1 0 0 4 Unmodified _RNACEMCF_ REV__ENSG00000183496|ENST00000329713|MEX3B;REV__ENST00000558133.1_1_15:82335503-82336997:-|nuORF 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5925 0 0 807.2821985197679 0 807.2821985197679 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5925 + + 8 + NaN NaN 118115 NaN 8269 2832 11099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11104 53.048 NaN 238160 35 0 47929 0.261 + 280 AFLVCANDAMR 11 57 404.1937866661393 NaN 0 404.20123291015625 PEAK HCD FTMS 0 0 0 11099 3705.0859375 1 0 0 5 Unmodified _AFLVCANDAMR_ REV__ENSG00000068697|ENST00000175091|LAPTM4A 9.764250979337305 0.3144217753969362 2 A 1 -1 6.9897 0 0 0.86681 0 0 616.2625447904834 116.05025659732655 732.3128013878099 0 0 0 0 0 0 0 0 0 A 0.86681 + + 5 + NaN NaN 122693.3 NaN 8270 2832 11099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11106 53.053 NaN 1202500 35 0 189430 0.327 + 17949 MITDLEERL 9 99 568.2866588488881 1134.5587647645762 2 568.286865234375 MULTI HCD FTMS 0 0 0 11105 651808.375 0.8011605185843683 -7 0.15033340454101562 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 148.26817274609934 1.0657023776783114E-05 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 114.75 0 0 10.114 10.114 90.541 0 0 0 20.929089686793816 79.44415285812511 20.929089686793816 2.0340219607612653 0 2.9247425010840047 2 1.9916440611282624 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TDEE{I|L}R{I|L};{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]TE{I|L};{[RE]|[WV]}{I|L}E[{M(Oxidation (M))|F}V]TE{I|L};{[QN]|[E{I|L}]|[KN]}RE[{M(Oxidation (M))|F}V]TE{I|L};[VP]TNTAATT{M(Oxidation (M))|F}{I|L};[VP]TNT{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}{I|L} 10.114;9.9345;8.9829;8.1892;6.7371;3.6521;3.542;3.4458;3.2243;2.8107 +;-;-;+;-;-;-;-;-;- + 3094 NaN NaN 266513.3 NaN 8271 2833 11105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11107 53.057 NaN 507820 35 0 141170 0.261 + 10051 IFDSKVTEI 9 63 526.2871622429803 1050.5597715527606 2 526.2872924804688 MULTI HCD FTMS 0 0 0 11105 271082.21875 0.6661683950280144 3 -0.06207275390625 2 Unmodified _IFDSKVTEI_ chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2 64.9267550582149 0.010729834900650251 2 {I|L}{M(Oxidation (M))|F}DSKVTE{I|L} 9 0 + 74.892 0 0 7.1288 7.1288 86.306 0 0 0 14.973024840566467 0.9421249706470292 0.9421249706470292 0.9421249706470292 0 2.579689690656103 0 1.305462187404089 0 + + {I|L}{M(Oxidation (M))|F}DSKVTE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DSKVTE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVKSDE{I|L};{[QN]|[E{I|L}]|[KN]}[YG]KVTE{I|L};{I|L}{M(Oxidation (M))|F}T[QT]VTE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}[QT]TE{I|L};{[ET]|[MV]}{[NV]|[RG]}{I|L}C{I|L}{M(Oxidation (M))|F}{I|L} 7.1288;7.0391;5.3854;5.3016;4.346;3.1083;0.91621 +;+;-;-;-;-;- + 210 + NaN NaN 166506.8 NaN 8272 2833 11105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11108 53.061 NaN 455050 35 0 26005 0.261 -1 MALFQHLTCV 10 90 589.7889904076171 NaN 0 589.8036499023438 PEAK HCD FTMS 0 0 0 11105 16779.751953125 1 0 0 3 Oxidation (M) _M(Oxidation (M))ALFQHLTCV_ ENSG00000023445|ENST00000263464|BIRC3 24.990960013464015 0.24020601536510064 2 A{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}G 8 -1 28.731 0 0 2.4399 0 0 147.0411721671008 158.0554598443969 305.0966320114977 0 0 0 0 0 0 0 1.535666875892183 0 A{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}G 2.4399 - 707 + NaN NaN 155569.2 NaN 8273 2833 11105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11109 53.064 NaN 229150 35 0 31784 0.262 + 11110 IYIAGHPAF 9 54 494.7661233973819 987.5176938615638 2 494.76629638671875 MULTI HCD FTMS 0 0 0 11105 53913.1875 0.06314442951133599 13 -0.2574501037597656 4 Unmodified _IYIAGHPAF_ ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL 67.41302359171755 0.009925318700911543 2 [Y{I|L}]{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F} 9 0 + 49.019 0 0 4.9638 4.9638 83.322 0 0 0 3.076308488167868 2.3459165064184617 2.3459165064184617 2.3459165064184617 0 2.0356668758921828 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}A{[HG]|PP}[PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}A{[HG]|PP}{M(Oxidation (M))|F}[PA];[Y{I|L}]{I|L}[YN]R{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HQ][PA]{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HQ]{M(Oxidation (M))|F}[PA] 4.9638;4.7263;4.318;4.2271;3.9896 +;-;-;-;- + 209 + NaN NaN 120711.4 NaN 8274 2833 11105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11110 53.067 NaN 96950 35 0 5127.1 0.261 + 30883 VQPSSFQNI 9 42 510.261247029909 1018.507941126618 2 510.763427734375 MULTI HCD FTMS 0 0 0 11105 33479.44140625 0.5990958415000014 5 -0.097808837890625 5 Unmodified _VQPSSFQNI_ chr15:40873436-40873684|119|13.16|0.29|5.49|-|1|None,RHOV|1;ENSG00000104140|ENST00000220507|RHOV 24.881564428377168 0.14538514251145815 2 {[QV]|[N{I|L}]|[RA]|[KV]}[PS]S{M(Oxidation (M))|F}QN{I|L} 9 0 + 39.855 0 0 3.9131 3.9131 89.734 0 0 0 4.409999832893597 24.3707623615773 4.409999832893597 39.85531242661758 0 1.9731975075880328 0 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}[PS]S{M(Oxidation (M))|F}QN{I|L} 3.9131 + + 45 NaN NaN 102949.6 NaN 8275 2833 11105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11111 53.071 NaN 163330 35 0 27133 0.262 -1 0 40 415.25376823974204 414.24649177314205 1 416.5782470703125 MULTI HCD FTMS 0 0 0 11105 4421.3056640625 0.011906104970332308 -15 0.340179443359375 6 NaN NaN 2 H 1 -1 2.4743 0 0 0.59729 0 0 62.07456902099205 212.09275232486564 274.1673213458577 0 0 0 0 0 0 0 0 0 H 0.59729 - 2 + NaN NaN 132002.2 NaN 8276 2833 11105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11113 53.076 NaN 637270 35 0 61536 0.327 + -1 CLPPLPASVL 10 90 533.801530054441 NaN 0 533.7880249023438 PEAK HCD FTMS 0 0 0 11112 8249.990234375 0.17659380909199987 4 -0.07486343383789062 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LPPLPASVL_ REV__ENST00000470053.1_1_2:106717459-106717567:-|nuORF 11.640296217721598 0.3302218087712401 2 V 1 -1 5.4846 0 0 0.5147 0 0 182.133595742492 781.3626386994781 963.49623444197 0 0 0 0 0 0 0 0 0 V 0.5147 + + 46 + NaN NaN 188364.8 NaN 8277 2834 11112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11114 53.08 NaN 179460 35 0 39831 0.261 + -1 MSSLHGTREE 10 59 581.7617103330571 1161.508867732914 2 581.76220703125 MULTI HCD FTMS 0 0 0 11112 53303.34375 0.5956156588973368 8 -0.15648269653320312 2 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 17.11289562659939 0.35104376501799556 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVSR 6 -1 40.323 0 0 3.4716 0 0 0 495.2044771783813 495.2044771783813 29.86494082808356 0 0 0 0 1.3494850021680094 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SVSR 3.4716 - 28 + NaN NaN 114507.2 NaN 8278 2834 11112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11115 53.084 NaN 362530 35 0 62477 0.261 + -1 MLEQLRSI 8 62 503.27192734825616 1004.5293017633123 2 503.27191162109375 MULTI HCD FTMS 0 0 0 11112 37549.41015625 0.26058604044937483 6 -0.11406707763671875 3 Oxidation (M) _M(Oxidation (M))LEQLRSI_ REV__ENSG00000140505|ENST00000343932|CYP1A2 8.593279151180031 0.5292430274356741 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6913 0 0 839.4506865062796 0 839.4506865062796 0 2.7249282745525942 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6913 + + 61 + NaN NaN 144169.9 NaN 8279 2834 11112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11116 53.087 NaN 120500 35 0 12727 0.261 -1 LPVPMLSAR 9 48 500.28517238644207 NaN 0 500.29534912109375 PEAK HCD FTMS 0 0 0 11112 13195.4931640625 1 0 0 4 Oxidation (M) _LPVPM(Oxidation (M))LSAR_ ENSG00000183389|ENST00000641156|OR56A4 11.640296217721598 0.23883959125015683 2 PTS{I|L}E 5 -1 23.755 0 0 2.379 0 0 113.06411781634274 355.20810877017817 468.2722265865209 0 0 0 0 0 0 0 0.4247425010840047 0 PTS{I|L}E 2.379 - 23 + NaN NaN 98771.2 NaN 8280 2834 11112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11117 53.09 NaN 116290 35 0 5481.6 0.261 + -1 TCIFELDLWA 10 49 634.3058782258927 NaN 0 634.3048706054688 PEAK HCD FTMS 0 0 0 11112 30294.302734375 0.9120896600519263 3 -0.0586700439453125 5 Carbamidomethyl (C) _TC(Carbamidomethyl (C))IFELDLWA_ REV__ENSG00000125965|ENST00000374369|GDF5;REV__GDF5|p.A69Gfs*25|1|0.84|ENSG00000125965|chr20:35437723-35437724|-/C|frameshift_variant 1.6526216038709556 0.33876987398426067 2 Y 1 -1 3.9794 0 0 0.31418 0 0 565.2101318406541 535.2982882135374 1100.5084200541914 0 0 0 0 0 0 0 0 0 Y 0.31418 - 2 + NaN NaN 116143.4 NaN 8281 2834 11112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11119 53.095 NaN 232780 35 0 24483 0.327 -1 IPMDPEHVEL 10 60 598.2868607271474 1194.5591685210948 2 598.2871704101562 MULTI HCD FTMS 0 0 0 11118 103271.546875 0.6904426550212903 7 -0.1369171142578125 1 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 36.506200033944 0.17572556831573002 2 {I|L}{M(Oxidation (M))|F}PD 4 -1 42.423 0 0 3.5513 0 0 0 719.3369562141725 719.3369562141725 31.453650195120844 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}PD 3.5513 - 39 + NaN NaN 134547.5 NaN 8282 2835 11118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11120 53.1 NaN 248020 35 0 27383 0.261 + 8554 HASDVLENAF 10 63 551.7619671659613 1101.5093813987226 2 551.762451171875 MULTI HCD FTMS 0 0 0 11118 39914.5234375 0.4089988801293283 3 -0.0552978515625 2 Unmodified _HASDVLENAF_ ENSG00000113384|ENST00000265070|GOLPH3 13.614867670302875 0.3837631382804675 2 {I|L}ENA{M(Oxidation (M))|F} 5 5 37.479 0 0 3.4025 0 0 509.22508437324376 0 509.22508437324376 0 20.312346841520746 0 0 0 1.079689690656103 0 0 0 + {I|L}ENA{M(Oxidation (M))|F} 3.4025 + + 120 NaN NaN 114355 NaN 8283 2835 11118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11121 53.103 NaN 211880 35 0 27742 0.261 + -1 PQFGVFSIQM 10 65 585.2863874850234 1168.5582220368467 2 585.301025390625 MULTI HCD FTMS 0 0 0 11118 13493.609375 0.19435192039860114 9 -0.1825103759765625 3 Oxidation (M) _PQFGVFSIQM(Oxidation (M))_ REV__ENSG00000134910|ENST00000392708|STT3A;REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF;REV__ENST00000534472.5_1_11:125465789-125479519:+|nuORF;REV__nc|ENSG00000134910|P46977-2|STT3A 8.155526934196011 0.43213520406898465 2 ENQ{M(Oxidation (M))|F} 4 -1 31.146 0 0 2.6654 0 0 632.3493519513687 0 632.3493519513687 0 8.750612633917001 0 0 0 0 0 1.3494850021680094 0 ENQ{M(Oxidation (M))|F} 2.6654 - 190 NaN NaN 133349.2 NaN 8284 2835 11118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11122 53.106 NaN 176350 35 0 28439 0.262 -1 PVDKDMEL 8 55 481.72851447393793 961.4424760146759 2 481.72857666015625 MULTI HCD FTMS 0 0 0 11118 118765.6953125 1 0 0 4 Oxidation (M) _PVDKDM(Oxidation (M))EL_ ENSG00000147485|ENST00000356297|PXDNL 32.30548876998284 0.3297748069446609 2 {I|L}{M(Oxidation (M))|F}E{I|L} 4 -1 38.175 0 0 3.9706 0 0 441.18602187324376 0 441.18602187324376 0 17.71775040875461 0 0 0 0.7742275032520141 0 0 0 {I|L}{M(Oxidation (M))|F}E{I|L} 3.9706 - 55 NaN NaN 132070.8 NaN 8285 2835 11118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11123 53.11 NaN 136450 35 0 12520 0.261 -1 FPDPVDSGTQM 11 43 605.2581217287453 1208.5016905242906 2 605.2591552734375 MULTI HCD FTMS 0 0 0 11118 36603.83984375 0.4283460498940447 -7 0.15368270874023438 5 Oxidation (M) _FPDPVDSGTQM(Oxidation (M))_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 27.223235318498237 0.2198854698817499 2 T[HM]SD 5 -1 19.397 0 0 1.6051 0 0 82.01343421649979 552.2465914361936 634.2600256526935 0 0 0 0 0 0.7887254899964358 0 0.3807196863200844 0 T[HM]SD 1.6051 - 30 + NaN NaN 105593.2 NaN 8286 2835 11118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11125 53.115 NaN 1657500 35 0 249910 0.327 + 15560 LPDQPPYHL 9 95 540.2796777783375 1078.5448026234749 2 540.27978515625 MULTI HCD FTMS 0 0 0 11124 763274.8125 0.8867365243047728 -2 0.039127349853515625 1 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 126.56589448801843 0.0008132384440316759 2 {I|L}PDQ[TA]{I|L}Q 8 5 87.032 0 0 8.0694 0 0 0 209.0566347711547 209.0566347711547 46.365928420337056 0 0 0 0 0.7742275032520141 1.6989700043360187 1.5356668758921828 0.8807196863200843 {I|L}PDQ[TA]{I|L}Q 8.0694 - 3647 + NaN NaN 337313.8 NaN 8287 2836 11124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11126 53.119 NaN 897940 35 0 103880 0.261 + 2428 DPSNIYNLT 9 80 518.7504136920609 NaN 0 518.7329711914062 PEAK HCD FTMS 0 0 0 11124 17499.1796875 0.5933220067090912 3 -0.0520172119140625 2 Unmodified _DPSNIYNLT_ REV__ENSG00000097096|ENST00000341460|SYDE2;REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF;REV__nc|ENSG00000097096|Q5VT97-2|SYDE2 18.1463463914782 0.1998403495282098 2 TQND{M(Oxidation (M))|F}D 6 -1 37.771 0 0 3.6477 0 0 131.13274057330335 181.06153284244377 312.19427341574715 0 0 0 0 0 0 0 0.841129063296272 0.75 TQND{M(Oxidation (M))|F}D 3.6477 - 314 + NaN NaN 229520.3 NaN 8288 2836 11124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11127 53.123 NaN 262820 35 0 34724 0.261 + 15372 LPDERTISL 9 65 522.2902563539793 1042.5659597747585 2 522.2904052734375 MULTI HCD FTMS 0 0 0 11124 80217.4296875 0.05698809792754387 14 -0.279541015625 3 Unmodified _LPDERTISL_ ENSG00000101138|ENST00000217109|CSTF1 27.223235318498237 0.1251536255799991 2 {I|L}PD 3 6 46.418 0 0 4.4523 0 0 0 714.3751925104124 714.3751925104124 27.008023872519953 0 0 0 0 0.6139829889124311 1.5228787452803376 0.4247425010840047 0 + {I|L}PD 4.4523 + + 48 + NaN NaN 126154.2 NaN 8289 2836 11124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11128 53.126 NaN 148330 35 0 7625.3 0.261 -1 0 48 603.3045312432008 1806.8917643298023 3 603.30517578125 MULTI HCD FTMS 0 0 0 11124 51733.0859375 0.47720809731770947 5 -0.10778427124023438 4 NaN NaN 2 DMAA 4 -1 21.938 0 0 1.2141 0 0 1017.5042378961052 398.21506677799067 1415.7193046740958 0 0 0 0 0 0 0 0 0 DMAA 1.2141 - 77 + NaN NaN 127069.7 NaN 8290 2836 11124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11129 53.129 NaN 328720 35 0 28052 0.261 + 28394 TPFHEIMSL 9 84 545.765529471714 1089.5165060102279 2 545.7651977539062 MULTI HCD FTMS 0 0 0 11124 90391.6796875 0.29816016451445815 -7 0.15699386596679688 5 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 61.357469665136826 0.01568246967499496 2 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YT]{I|L}{M(Oxidation (M))|F}S 8 4 55.851 0 0 5.1263 0 0 0 128.07265744092675 128.07265744092675 43.02046884880937 0 0 0 0 0.9247425010840047 1.6989700043360187 1.1989700043360187 0 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YT]{I|L}{M(Oxidation (M))|F}S 5.1263 - 260 NaN NaN 130600.2 NaN 8291 2836 11124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11131 53.134 NaN 712860 35 0 119720 0.327 + 15500 LPDMVVSHL 9 72 513.768193570899 NaN 0 513.7681274414062 PEAK HCD FTMS 0 0 0 11130 310519.34375 0.2533651662141259 23 -0.4712562561035156 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 99.79894945604345 3.205147536985122E-05 2 PD{M(Oxidation (M))|F}VVS 6 3 56.609 0 0 5.52 0 0 113.08521066857425 265.13022791080317 378.2154385793774 0 0 0 0 0 2.2931576817365436 0 0.7302046884880937 0 + PD{M(Oxidation (M))|F}VVS 5.52 + + 443 + NaN NaN 205653.4 NaN 8292 2837 11130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11132 53.139 NaN 373660 35 0 60779 0.261 + 22271 QPDPAIGVHL 10 58 523.7851617724093 1045.5557706116185 2 523.7850952148438 MULTI HCD FTMS 0 0 0 11130 117098.90625 0.3141085619356752 -12 0.2548370361328125 2 Unmodified _QPDPAIGVHL_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 26.88365393820708 0.25965138844209146 2 PA{I|L}GV[PG]{I|L} 8 5 24.959 0 0 2.3871 0 0 323.11155898261876 0 323.11155898261876 0 2.2826067072001877 0 0 0 0 0 0 0 PA{I|L}GV[PG]{I|L} 2.3871 - 120 NaN NaN 155996.8 NaN 8293 2837 11130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11133 53.142 NaN 126700 35 0 11438 0.261 + 12451 KQLAVYEEF 9 49 563.7923467043662 1125.5701404755323 2 563.792236328125 MULTI HCD FTMS 0 0 0 11130 38626.41796875 0.19649177685871258 7 -0.14340591430664062 3 Unmodified _KQLAVYEEF_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 43.77239144664712 0.04802738721622131 2 AVYEE{M(Oxidation (M))|F} 6 3 56.363 0 0 5.0075 0 0 369.23509413886876 0 369.23509413886876 0 52.38351285388511 0 0 0 2.1237125054200234 0 0 0 + AVYEE{M(Oxidation (M))|F} 5.0075 + + 78 NaN NaN 121927.2 NaN 8294 2837 11130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11134 53.145 NaN 98859 35 0 7267.9 0.261 -1 0 40 638.5304565429688 NaN 0 638.5304565429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109369.1 NaN 8295 2837 11130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11136 53.15 NaN 567080 35 0 183900 0.327 + 30108 VFYAPQTYA 9 53 530.2609612828534 1058.5073696325067 2 530.2608642578125 MULTI HCD FTMS 0 0 0 11135 262297.34375 0.5869457512329265 -12 0.24814224243164062 1 Unmodified _VFYAPQTYA_ A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF 10.823927491677226 0.26684000660059787 2 T 1 8 9.732 0 0 0.91941 0 0 132.16957373282725 822.2678946508853 954.4374683837125 0 0 0 0 0 0 0 0.4247425010840047 0 + T 0.91941 + + 18 + NaN NaN 177185.3 NaN 8296 2838 11135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11137 53.155 NaN 236940 35 0 27657 0.261 + 6649 FPLTTESAM 9 58 506.7362287892123 1011.4579046452246 2 506.7365417480469 MULTI HCD FTMS 0 0 0 11135 108411.1875 0.7714021836425046 3 -0.07204818725585938 2 Oxidation (M) _FPLTTESAM(Oxidation (M))_ ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF 71.13359017698441 0.008721403657255008 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TTESA{M(Oxidation (M))|F} 9 0 + 69.364 0 0 6.8578 6.8578 93.75 0 0 0 4.762036441594191 54.75949072601743 4.762036441594191 31.025684359364405 0 2.305462187404089 0 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TTESA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}T[WM]A{M(Oxidation (M))|F} 6.8578;3.7904 +;- + 113 NaN NaN 121196.4 NaN 8297 2838 11135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11138 53.158 NaN 203600 35 0 22774 0.261 -1 CLRDMQPL 8 59 496.23895701135706 990.4633610895141 2 496.2392578125 MULTI HCD FTMS 0 0 0 11135 67589.9140625 0.6916729585935248 -1 0.016193389892578125 3 Oxidation (M) _CLRDM(Oxidation (M))QPL_ ENSG00000102921|ENST00000262384|N4BP1 16.942295170755138 0.46913822049235215 2 E{I|L} 2 -1 19.949 0 0 2.0141 0 0 730.3255482404312 0 730.3255482404312 0 11.8765315847925 0 0 0 0 0 0.5 0 E{I|L} 2.0141 - 35 NaN NaN 116947.3 NaN 8298 2838 11135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11139 53.162 NaN 144340 35 0 6128.6 0.261 + 35897 YYSNLHQTF 9 64 586.77467895435 NaN 0 586.7747802734375 PEAK HCD FTMS 0 0 0 11135 57269.62109375 0.8496347115424847 5 -0.1009674072265625 4 Unmodified _YYSNLHQTF_ ENSG00000171806|ENST00000310392|METTL18 12.240655878213236 0.2359303321180293 2 TN{M(Oxidation (M))|F} 3 7 13.188 0 0 1.1257 0 0 165.07594515860495 641.3042086236936 806.3801537822985 0 0 0 0 0 0 0 0 0 TN{M(Oxidation (M))|F} 1.1257 - 33 + NaN NaN 128466.3 NaN 8299 2838 11135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11141 53.167 NaN 1230600 35 0 309900 0.327 + 3154 EASPVEPQL 9 64 485.2480207859445 968.481488638689 2 485.2480773925781 MULTI HCD FTMS 0 0 0 11140 687213.5 1 0 0 1 Unmodified _EASPVEPQL_ ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 75.76082778847304 0.0072241045649327805 2 {[CP]|[EA]}S[VP]EPQ{I|L} 9 0 + 39.311 0 0 4.0591 4.0591 88.071 0 0 0 20.908262770888523 7.884927530395501 7.884927530395501 16.211914184715496 0 1.589136830878453 0 0.4247425010840047 0.75 + + {[CP]|[EA]}S[VP]EPQ{I|L};[VP]ESAEPQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KS]E{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L} 4.0591;2.3851;1.5189 +;-;- + 154 + NaN NaN 279687.8 NaN 8300 2839 11140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11142 53.171 NaN 764550 35 0 47660 0.261 + 6015 FPDRIMNTF 9 95 578.7762597744046 1155.537966615609 2 578.7764892578125 MULTI HCD FTMS 0 0 0 11140 307406.625 0.5259664119766849 -9 0.1860809326171875 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 132.13456570155267 0.00047552052208015726 2 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 89.153 0 0 7.7152 7.7152 88.041 0 0 0 63.55713166721742 16.4781748188864 16.4781748188864 2.4649423830414037 0 3.0114393726401687 0 2.149649864804614 0.9194451763165201 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RD]T{M(Oxidation (M))|F};[DP]R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 7.7152;7.5019;7.4638;6.705;6.667;6.387;5.4417;5.4036;5.0945;4.7054 +;-;+;-;-;-;-;-;-;- + 1515 + NaN NaN 204900.6 NaN 8301 2839 11140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11143 53.175 NaN 216910 35 0 13943 0.261 + 32351 VYVIWAQQL 9 63 560.3128730700433 NaN 0 560.323974609375 PEAK HCD FTMS 0 0 0 11140 6219.99755859375 0.38467126142277114 -1 0.0162811279296875 3 Unmodified _VYVIWAQQL_ REV__ENST00000370951.5_1_1:70716702-70716798:+|nuORF 13.50788311687929 0.22978952576613207 2 KQ{I|L}EQV 6 -1 24.346 0 0 2.1765 0 0 131.07218458348376 259.1085299127563 390.18071449624006 0 0 0 0 0 0.4247425010840047 0 0 0 KQ{I|L}EQV 2.1765 - 90 + NaN NaN 113499.6 NaN 8302 2839 11140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11144 53.178 NaN 104330 35 0 18264 0.264 + 11206 IYKFITERF 9 41 406.2289475734606 1215.6650133205817 3 406.22833251953125 MULTI HCD FTMS 0 0 0 11140 22661.078125 0.5747282807912442 -2 0.032474517822265625 4 Unmodified _IYKFITERF_ ENSG00000178919|ENST00000375123|FOXE1 4.189502756095605 0.319257502753388 2 {I|L}Y 2 7 40.969 0 0 3.3701 0 0 0 936.4925071322672 936.4925071322672 23.979400086720375 0 0 0 0 0 2 0 0 + {I|L}Y 3.3701 + + 10 + NaN NaN 103037.5 NaN 8303 2839 11140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11145 53.181 NaN 55638 35 0 4188.9 0.261 -1 0 44 455.2486250053741 454.2413485387741 1 457.2544250488281 MULTI HCD FTMS 0 0 0 11140 29554.62109375 0.5973078769817742 -4 0.0715789794921875 5 NaN NaN 2 P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 2.9318 0 0 0.64543 0 0 95.09268018115536 0 95.09268018115536 0 2.9318250140072184 0 0 0 0 0 0 0 P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 0.64543 - 6 + NaN NaN 105517.5 NaN 8304 2839 11140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11146 53.185 NaN 134350 35 0 9083.4 0.261 + 10123 IFLLCFMNN 9 58 557.7741072091242 1113.5336614850482 2 557.773193359375 MULTI HCD FTMS 0 0 0 11140 7601.80712890625 0.10437380974242917 -6 0.1140899658203125 6 Unmodified _IFLLCFMNN_ nc|ENSG00000250120|Q9Y5I2-3|PCDHA10 8.593279151180031 0.2858735984551981 2 NTAA{M(Oxidation (M))|F}{I|L}KN 8 7 21.688 0 0 1.9476 0 0 236.07066207274198 0 236.07066207274198 0 3.7287219205682476 0 0 0 0.23020468848809378 0 0 0 NTAA{M(Oxidation (M))|F}{I|L}KN 1.9476 - 127 + NaN NaN 111421.2 NaN 8305 2839 11140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11148 53.19 NaN 1538400 35 0 239030 0.327 + 17950 MITDLEERL 9 97 568.2866588488881 1134.5587647645762 2 568.2869262695312 MULTI HCD FTMS 0 0 0 11147 813580.25 1 0 0 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 148.26817274609934 1.0657023776783114E-05 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 115.94 0 0 10.219 10.219 90.617 0 0 0 21.53668480850955 65.08355938871738 21.53668480850955 2.0340219607612653 0 2.9247425010840047 2 2.110924374808178 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}[{I|L}A][NG][TA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]{I|L}D[NG][TA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[VG]QQTE{I|L};{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]TE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[VG]QQT{I|L}E;{[RE]|[WV]}{I|L}E[{M(Oxidation (M))|F}V]TE{I|L} 10.219;10.04;9.1347;8.2874;5.577;5.4893;4.7818;3.9051;3.8767;3.6909 +;-;-;+;-;-;-;-;-;- + 5171 NaN NaN 336018 NaN 8306 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11149 53.194 NaN 1295200 35 0 153870 0.261 + 22913 QYQQIISRL 9 92 574.82533597835 1147.6361190235 2 574.8261108398438 MULTI HCD FTMS 0 0 0 11147 274008.625 1 0 0 2 Unmodified _QYQQIISRL_ ENSG00000104881|ENST00000360957|PPP1R13L 114.18643581695662 0.002258955990713129 2 RS{I|L}{I|L}QQA{[DS]|[MA]|[CV]|TT} 9 8 69.526 0 0 6.0582 0 0 131.09689895417472 0 131.09689895417472 0 18.770913978408217 0 0 0 2.5356668758921828 0 2.4802046884880937 2.5 RS{I|L}{I|L}QQA{[DS]|[MA]|[CV]|TT} 6.0582 - 1590 + NaN NaN 307640.7 NaN 8307 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11150 53.198 NaN 158340 35 0 30259 0.261 -1 0 49 525.2987198055189 524.2914433389188 1 526.2877197265625 MULTI HCD FTMS 0 0 0 11147 5407.638671875 0.5534567823373486 1 -0.03284454345703125 3 NaN NaN 2 D{[QN]|[E{I|L}]|[KN]} 3 -1 10.458 0 0 1.9946 0 0 149.11100618247195 0 149.11100618247195 0 10.45757490560675 0 0 0 0 0 0 0 D{[QN]|[E{I|L}]|[KN]} 1.9946 - 11 + NaN NaN 117248.5 NaN 8308 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11151 53.201 NaN 304510 35 0 42515 0.261 + 25175 SALGYLHSL 9 59 480.76113258456735 959.5077122359347 2 480.76116943359375 MULTI HCD FTMS 0 0 0 11147 60837.64453125 0.41386113151039716 -3 0.05539703369140625 4 Unmodified _SALGYLHSL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 39.94969957227396 0.06557568441294001 2 {[SA]|[TG]}{I|L}GY{I|L}H{[TV]|[{I|L}S]} 9 0 + 46.163 0 0 4.8111 4.8111 90.806 0 0 0 8.014611430754144 40.22038431917139 8.014611430754144 38.579634678231464 0 1.8807196863200843 0 0.3252574989159953 0 + + {[SA]|[TG]}{I|L}GY{I|L}H{[TV]|[{I|L}S]};{[SA]|[TG]}{I|L}[H{I|L}]GY{[TV]|[{I|L}S]};[H{I|L}]{[TV]|[{I|L}S]}QY{[TV]|[{I|L}S]} 4.8111;0.79029;0.19765 +;-;- + 92 NaN NaN 134460.1 NaN 8309 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11152 53.204 NaN 75438 35 0 8906.3 0.261 -1 0 43 498.5305896003038 1990.0932525348153 4 498.7811279296875 MULTI HCD FTMS 0 0 0 11147 16522.888671875 0.45086914042514004 1 -0.03284454345703125 5 NaN NaN 2 YQ 2 -1 25.969 0 0 1.3049 0 0 0 1695.912877226563 1695.912877226563 22.870156338638594 0 0 0 0 0.5 0 0 0 YQ 1.3049 - 6 + NaN NaN 93280 NaN 8310 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11153 53.208 NaN 77714 35 0 3434.6 0.261 + 29382 TYQEFNHYL 9 43 607.7770086325564 1213.5394643319128 2 607.7783813476562 MULTI HCD FTMS 0 0 0 11147 19801.89453125 0.6921864611898302 1 -0.03284454345703125 6 Unmodified _TYQEFNHYL_ ENSG00000102384|ENST00000682095|CENPI 9.38312468134398 0.279288223203164 2 [YT]Q 3 6 34.705 0 0 2.8598 0 0 0 818.3504122369749 818.3504122369749 31.606056125004827 0 0 0 0 0 2 0 0.4247425010840047 + [YT]Q 2.8598 + + 5 + NaN NaN 102271.1 NaN 8311 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11154 53.211 NaN 119100 35 0 17891 0.264 -1 AFTQCNQLKT 10 40 404.2010027643397 1209.5811788932192 3 404.2005615234375 MULTI HCD FTMS 0 0 0 11147 22656.6015625 0.2564347771802056 6 -0.1204376220703125 7 Carbamidomethyl (C) _AFTQC(Carbamidomethyl (C))NQLKT_ ENSG00000085274|ENST00000349841|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN 5.40270961882225 0.4467063037482923 2 A{M(Oxidation (M))|F} 2 -1 22.206 0 0 1.8359 0 0 0 988.4519576903873 988.4519576903873 15.21652514092061 0 0 0 0 0.4247425010840047 0 0 0 A{M(Oxidation (M))|F} 1.8359 + + 5 + NaN NaN 124334.2 NaN 8312 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11155 53.214 NaN 102380 35 0 6060.1 0.261 + -1 YTLMRWPL 8 51 548.2875667962614 1094.5605806593228 2 548.78759765625 MULTI HCD FTMS 0 0 0 11147 13612.3681640625 0.026289186339992 28 -0.5686683654785156 8 Oxidation (M) _YTLM(Oxidation (M))RWPL_ REV__ENSG00000104853|ENST00000337392|CLPTM1;REV__nc|ENSG00000104853|O96005-3|CLPTM1;REV__nc|ENSG00000104853|O96005-4|CLPTM1 7.910154910731844 0.5302565402355366 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 7.7917 0 0 0.71185 0 0 564.3449567352978 0 564.3449567352978 0 3.1875876262441274 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]} 0.71185 - 16 + NaN NaN 97649 NaN 8313 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11156 53.218 NaN 59319 35 0 4315.2 0.261 -1 DCLLKVWYN 9 34 626.8078880063052 NaN 0 626.6585083007812 PEAK HCD FTMS 0 0 0 11147 14647.2978515625 1 0 0 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))DC(Carbamidomethyl (C))LLKVWYN_ DMXL1|p.E200Q|1|0.21|ENSG00000172869|chr5:119116191-119116191|G/C|missense_variant;ENSG00000172869|ENST00000539542|DMXL1;nc|ENSG00000172869|Q9Y485|DMXL1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96127.4 NaN 8314 2840 11147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11158 53.222 NaN 177230 35 0 9980.2 0.327 + 257 AFIEKHWTF 9 58 589.8030986228381 1177.591644312476 2 589.8034057617188 MULTI HCD FTMS 0 0 0 11157 49203.00390625 0.2181132410162786 6 -0.11063385009765625 1 Unmodified _AFIEKHWTF_ ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 43.77239144664712 0.04802738721622131 2 E{I|L}{[CP]|[EA]} 4 7 34.055 0 0 2.8919 0 0 717.3594837873062 0 717.3594837873062 0 8.085456211725202 0 0 0 1.305462187404089 0 0.6307196863200843 0 E{I|L}{[CP]|[EA]} 2.8919 - 221 NaN NaN 114501.9 NaN 8315 2841 11157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11159 53.227 NaN 178340 35 0 31053 0.261 + -1 MSSLHGTREE 10 52 581.7617103330571 1161.508867732914 2 581.76171875 MULTI HCD FTMS 0 0 0 11157 39314.234375 0.43930027581637326 15 -0.2848358154296875 2 Oxidation (M) _M(Oxidation (M))SSLHGTREE_ REV__ENST00000585509.5_1_17:76671875-76672019:-|nuORF 12.240655878213236 0.39661705172222156 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 28.952 0 0 2.4927 0 0 0 837.3902208425421 837.3902208425421 21.962724883926654 0 0 0 0 1 0 0.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 2.4927 + + 20 NaN NaN 133745.4 NaN 8316 2841 11157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11161 53.232 NaN 157410 35 0 8407.2 0.327 + 22735 QYEQVKQLF 9 57 591.8115041604897 NaN 0 591.8114013671875 PEAK HCD FTMS 0 0 0 11160 63109.40234375 0.8731440023312653 1 -0.01934814453125 1 Unmodified _QYEQVKQLF_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 34.40172386719151 0.09622929880997558 2 {I|L}EK 3 7 11.669 0 0 0.98755 0 0 182.1066371460774 626.2581881158811 808.3648252619585 0 0 0 0 0 0 0 0.3252574989159953 0 {I|L}EK 0.98755 - 10 + NaN NaN 111605.4 NaN 8317 2842 11160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11162 53.236 NaN 151540 35 0 14498 0.261 -1 FPDPVDSGTQM 11 48 605.2581217287453 1208.5016905242906 2 605.2579956054688 MULTI HCD FTMS 0 0 0 11160 85453.8984375 1 0 0 2 Oxidation (M) _FPDPVDSGTQM(Oxidation (M))_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 27.223235318498237 0.2198854698817499 2 {[ET]|[MV]}E[VP]DS 7 -1 16.955 0 0 1.403 0 0 0 448.1546195616531 448.1546195616531 6.012969751618085 0 0 0 0 0.8494850021680094 0 0 0 {[ET]|[MV]}E[VP]DS 1.403 - 68 NaN NaN 113863.2 NaN 8318 2842 11160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11163 53.24 NaN 188060 35 0 20076 0.261 + 13703 KYPLLISRI 9 55 551.8527478350716 1101.690942736943 2 551.8530883789062 MULTI HCD FTMS 0 0 0 11160 27270.974609375 0.5295926168334328 -2 0.042415618896484375 3 Unmodified _KYPLLISRI_ ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2 7.608950283845883 0.29333554423920943 2 KYP 3 6 25.177 0 0 2.2853 0 0 0 710.4605196588499 710.4605196588499 20.11561899423569 0 0 0 0 0.5 0 0 0 + KYP 2.2853 + + 9 + NaN NaN 136347.9 NaN 8319 2842 11160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11164 53.243 NaN 148810 35 0 19951 0.263 + 11207 IYKFITERF 9 55 406.2289475734606 1215.6650133205817 3 406.56365966796875 MULTI HCD FTMS 0 0 0 11160 18006.68359375 0.4269577657649914 1 -0.01934814453125 4 Unmodified _IYKFITERF_ ENSG00000178919|ENST00000375123|FOXE1 13.614867670302875 0.2427269026982664 2 {M(Oxidation (M))|F} 1 8 21.237 0 0 1.747 0 0 1050.5861691817129 0 1050.5861691817129 0 16.63303128443836 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.747 + + 6 + NaN NaN 110849.5 NaN 8320 2842 11160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11165 53.246 NaN 84669 35 0 5583.1 0.261 -1 SYQKVMALW 9 52 571.2892311710605 1140.5639094089208 2 571.2899169921875 MULTI HCD FTMS 0 0 0 11160 37550.0546875 0.18590412924402605 15 -0.2881317138671875 5 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 9.38312468134398 0.279288223203164 2 {I|L}W 2 -1 25.969 0 0 2.2769 0 0 823.3943958966812 0 823.3943958966812 0 18.979400086720375 0 0 0 0.5 0 0 0 {I|L}W 2.2769 + + 18 NaN NaN 103160 NaN 8321 2842 11160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11167 53.251 NaN 828200 35 0 114540 0.327 + 15561 LPDQPPYHL 9 90 540.2796777783375 1078.5448026234749 2 540.27978515625 MULTI HCD FTMS 0 0 0 11166 385412.21875 0.44775366051918 5 -0.11068344116210938 1 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 88.95385435242217 0.004553379958619559 2 {I|L}PDQ[TA]{I|L}Q 8 5 77.414 0 0 7.1777 0 0 0 209.05681787662346 209.05681787662346 56.21645960868548 0 0 0 0 0.75 1.6989700043360187 0.7742275032520141 0.8807196863200843 {I|L}PDQ[TA]{I|L}Q 7.1777 - 1003 + NaN NaN 211724.8 NaN 8322 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11168 53.256 NaN 975010 35 0 115240 0.261 + 22914 QYQQIISRL 9 95 574.82533597835 1147.6361190235 2 574.824462890625 MULTI HCD FTMS 0 0 0 11166 152244.34375 0.5556188012329903 3 -0.058673858642578125 2 Unmodified _QYQQIISRL_ ENSG00000104881|ENST00000360957|PPP1R13L 80.6760300276096 0.005633624786464751 2 S{I|L}{I|L}QQC(Carbamidomethyl (C)){I|L} 7 7 62.903 0 0 5.4811 0 0 287.19526869941564 0 287.19526869941564 0 10.770446522456169 0 0 0 1.1184151806525389 0 1.0044321917401078 0.6505149978319906 S{I|L}{I|L}QQC(Carbamidomethyl (C)){I|L} 5.4811 - 2157 NaN NaN 243128.2 NaN 8323 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11169 53.259 NaN 296880 35 0 42329 0.261 + 29873 VFDEAIRAV 9 62 510.27963227123945 1018.5447116092789 2 510.27996826171875 MULTI HCD FTMS 0 0 0 11166 158743.359375 0.7210570599300844 -4 0.084686279296875 3 Unmodified _VFDEAIRAV_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 53.40400417844725 0.026808823219830042 2 R{I|L}AEDEV 7 7 72.511 0 0 7.1191 0 0 188.11563307929845 0 188.11563307929845 0 53.3103844862778 0 0 0 2.6549471895720984 0 0 0 R{I|L}AEDEV 7.1191 - 217 NaN NaN 136240.3 NaN 8324 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11170 53.263 NaN 172100 35 0 16358 0.261 -1 IPMDPEHVEL 10 52 598.2868607271474 1194.5591685210948 2 598.2870483398438 MULTI HCD FTMS 0 0 0 11166 60206.30078125 0.4025213083205948 15 -0.2949981689453125 4 Oxidation (M) _IPM(Oxidation (M))DPEHVEL_ ENSG00000124733|ENST00000244711|MEA1 20.41453444215458 0.3201613495159799 2 VE{I|L} 3 -1 30.445 0 0 2.5487 0 0 835.3530420205719 0 835.3530420205719 0 21.46591250700361 0 0 0 0.4247425010840047 0 0 0 VE{I|L} 2.5487 + + 13 NaN NaN 112800.8 NaN 8325 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11171 53.266 NaN 271720 35 0 11191 0.261 + 19049 NEDNGIIKAF 10 74 560.785489984792 1119.5564270363839 2 560.7854614257812 MULTI HCD FTMS 0 0 0 11166 76838.5703125 0.7745803489516511 -1 0.01934814453125 5 Unmodified _NEDNGIIKAF_ ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF 75.5705956163825 0.010984675281887875 2 {[QD]|[EN]|[WG]|[KD]|[RS]}DN{[VA]|[{I|L}G]}{I|L}KA{M(Oxidation (M))|F} 10 0 + 73.447 0 0 6.5604 6.5604 88.716 0 0 0 6.518637558036673 6.518637558036673 6.518637558036673 9.164539485499247 0 2.555462187404089 0 0 0.4247425010840047 + + {[QD]|[EN]|[WG]|[KD]|[RS]}DN{[VA]|[{I|L}G]}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}DGG{[VA]|[{I|L}G]}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}D[KP][TA]KA{M(Oxidation (M))|F};[HV]K{I|L}{[VA]|[{I|L}G]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{M(Oxidation (M))|F};[HV][SG]{[{M(Oxidation (M))|F}D]|MM}{I|L}KA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}D[KP][YN][K{I|L}] 6.5604;5.7418;3.8602;3.2489;3.2273;0.013207 +;-;-;-;-;- + 170 + NaN NaN 130084.9 NaN 8326 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11172 53.269 NaN 448020 35 0 32610 0.261 + 7602 FYHKYFNYL 9 64 647.8164504130114 1293.6183478928226 2 647.8167724609375 MULTI HCD FTMS 0 0 0 11166 70853.9765625 0.07710577024314161 -7 0.1367034912109375 6 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 70.33199760932243 0.0089807860198535 2 [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L} 9 0 + 74.619 0 0 5.7683 5.7683 85.834 0 0 0 4.762036441594191 54.32889097984422 4.762036441594191 5.568109453757657 0 2.305462187404089 0 0 0.7742275032520141 + + [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};[YN]{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}NY{I|L};[YN]{M(Oxidation (M))|F}[WK]N{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]N[WK]{M(Oxidation (M))|F}NY{I|L};[YN]{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{M(Oxidation (M))|F}]N[WK]N{M(Oxidation (M))|F}Y{I|L} 5.7683;5.3378;5.0564;4.626;3.8574;3.4269;3.2382;3.1456;2.9866;2.8077 +;-;-;-;-;-;-;-;-;- + 345 NaN NaN 152039.5 NaN 8327 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11173 53.273 NaN 171730 35 0 10753 0.263 -1 GLATFGTMGAI 11 65 527.7655620720968 NaN 0 527.7659301757812 PEAK HCD FTMS 0 0 0 11166 49378.4921875 0.13522381253006485 53 -1.208526611328125 7 Oxidation (M) _GLATFGTM(Oxidation (M))GAI_ ENST00000361384.6_1_10:115613538-115613757:-|nuORF 8.745405648335112 0.31731194618894887 2 AE 2 -1 15.969 0 0 1.5158 0 0 131.09495566097206 719.3205050104124 850.4154606713844 0 0 0 0 0 0.5 0 0 0 AE 1.5158 - 8 + NaN NaN 113596.6 NaN 8328 2843 11166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11175 53.278 NaN 1062900 35 0 144520 0.327 + 9999 IENILGNAIS 10 81 522.2902563539793 1042.5659597747585 2 522.2799072265625 MULTI HCD FTMS 0 0 0 11174 19796.994140625 0.014064188358465343 22 -0.4282379150390625 1 Unmodified _IENILGNAIS_ REV__ENSG00000101138|ENST00000217109|CSTF1 10.799506525563784 0.4100970765206026 2 [YT]VS[KT]VA 8 -1 58.747 0 0 5.6349 0 0 0 190.0732955434818 190.0732955434818 10.765289596906271 0 0 0 0 0 1.6989700043360187 1.5484550065040281 0.3252574989159953 [YT]VS[KT]VA 5.6349 - 1026 NaN NaN 246565.8 NaN 8329 2844 11174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11176 53.282 NaN 481840 35 0 48963 0.261 + 28395 TPFHEIMSL 9 80 545.765529471714 1089.5165060102279 2 545.7655029296875 MULTI HCD FTMS 0 0 0 11174 217929.5 0.7188481926344733 1 -0.019550323486328125 2 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 74.92900055777586 0.007493270374442853 2 E{I|L}{M(Oxidation (M))|F}S{I|L} 5 4 56.938 0 0 5.226 0 0 482.2290211408219 0 482.2290211408219 0 28.344537511509316 0 0 0 0.9247425010840047 0 1.274227503252014 0 + E{I|L}{M(Oxidation (M))|F}S{I|L} 5.226 + + 559 NaN NaN 173436.5 NaN 8330 2844 11174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11177 53.286 NaN 115880 35 0 9326.3 0.261 -1 QYMKIISSF 9 57 566.7891191195193 1131.5636853058386 2 566.7892456054688 MULTI HCD FTMS 0 0 0 11174 22586.501953125 0.26782097462906657 11 -0.1971893310546875 3 Oxidation (M) _QYM(Oxidation (M))KIISSF_ ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF 19.256988751693697 0.19398022840297344 2 {I|L}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 -1 21.682 0 0 1.9161 0 0 679.335457622048 0 679.335457622048 0 16.197887582883936 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {I|L}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.9161 + + 36 + NaN NaN 105354.8 NaN 8331 2844 11174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11178 53.289 NaN 54071 35 0 8759.9 0.263 + 25766 SLEERQRERL 10 28 439.2407896682368 NaN 0 439.2485656738281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SLEERQRERL_ REV__ENSG00000158856|ENST00000358242|DMTN;REV__nc|ENSG00000158856|Q08495-2|DMTN;REV__nc|ENSG00000158856|Q08495-3|DMTN;REV__nc|ENSG00000158856|Q08495-4|DMTN 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107506.4 NaN 8332 2844 11174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11179 53.292 NaN 98346 35 0 7870.1 0.261 + 17697 MARLTQAIK 9 43 516.3042602539062 NaN 0 516.3042602539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MARLTQAIK_ REV__ENSG00000228567|ENST00000311170|VN1R4;REV__VN1R4|p.L251Ifs*18|1|0.12|ENSG00000228567|chr19:53266915-53266916|-/AT|frameshift_variant 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102244.2 NaN 8333 2844 11174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11181 53.297 NaN 865720 35 0 264910 0.327 + 30013 VFPDKGYSF 9 80 530.2609612828534 1058.5073696325067 2 530.2611083984375 MULTI HCD FTMS 0 0 0 11180 364826.1875 0.8163757117408171 -5 0.1075592041015625 1 Unmodified _VFPDKGYSF_ ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1 24.990960013464015 0.14443998892849796 2 V{M(Oxidation (M))|F}P[NS][YV]S{M(Oxidation (M))|F} 9 3 + 25.854 0 0 2.4425 2.4425 87.524 0 0 0 2.354087158783578 0.9324965691810476 0.9324965691810476 21.46591250700361 0 1.305462187404089 0 0 0 V{M(Oxidation (M))|F}P[NS][YV]S{M(Oxidation (M))|F};[KT][WE][YV]S{M(Oxidation (M))|F} 2.4425;0.41456 -;- 127 + NaN NaN 212501.2 NaN 8334 2845 11180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11182 53.302 NaN 449010 35 0 107830 0.261 + 3155 EASPVEPQL 9 52 485.2480207859445 968.481488638689 2 485.2479553222656 MULTI HCD FTMS 0 0 0 11180 246616.5625 0.3588645486446352 6 -0.11310958862304688 2 Unmodified _EASPVEPQL_ ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 47.748688679222035 0.03472022231463587 2 {M(Oxidation (M))|F}PQ{I|L} 4 6 23.94 0 0 2.4719 0 0 465.22191054511876 0 465.22191054511876 0 6.00370545117563 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}PQ{I|L} 2.4719 - 39 NaN NaN 156149.7 NaN 8335 2845 11180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11183 53.305 NaN 274700 35 0 74569 0.261 + 17124 LYLLNWTCLW 10 47 442.2317777899999 1323.6735039701998 3 442.23223876953125 MULTI HCD FTMS 0 0 0 11180 73667.765625 0.7346530557389693 -6 0.13048171997070312 3 Unmodified _LYLLNWTCLW_ ENST00000535871.1_1_12:6958520-6958992:-|nuORF 9.5439744041441 0.42184090036563754 2 W 1 9 20.485 0 0 1.5476 0 0 1119.5836124680498 0 1119.5836124680498 0 16.505149978319906 0 0 0 0.5 0 0 0 + W 1.5476 + + 10 + NaN NaN 129911.5 NaN 8336 2845 11180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11185 53.31 NaN 1038200 35 0 60709 0.327 + 6016 FPDRIMNTF 9 102 578.7762597744046 1155.537966615609 2 578.7765502929688 MULTI HCD FTMS 0 0 0 11184 516895.78125 0.8843980490984796 -2 0.032428741455078125 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 154.7525637096362 3.8021791163654463E-06 2 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 94.578 0 0 8.1847 8.1847 89.93 0 0 0 51.99875258700877 14.973024840566467 14.973024840566467 5.534933499718363 0 3.0356668758921828 0 2.2346368802282015 0.9124379954164592 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}{M(Oxidation (M))|F}RNT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}{M(Oxidation (M))|F}RGGT{M(Oxidation (M))|F} 8.1847;7.7057;7.6489;6.9089;6.9007;6.852;6.7797;6.0584;6.0015;5.9828 +;+;-;-;-;-;-;-;-;- + 1888 + NaN NaN 256927.4 NaN 8337 2846 11184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11186 53.314 NaN 956560 35 0 137470 0.261 + 22272 QPDPAIGVHL 10 88 523.7851617724093 1045.5557706116185 2 523.78515625 MULTI HCD FTMS 0 0 0 11184 371742.6875 0.9971703811770497 -3 0.058673858642578125 2 Unmodified _QPDPAIGVHL_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 42.09456458481378 0.12723037877173987 2 [QP]DPA{I|L}GV{I|L}H 10 2 + 37.344 0 0 3.5717 3.5717 86.77 0 0 0 10.74994107874317 10.779550148593486 10.74994107874317 12.540462739150296 0 0 0 0 0 [QP]DPA{I|L}GV{I|L}H;{[YC]|[HE]}{[QN]|[E{I|L}]|[KN]}{I|L}GV{I|L}H;[H{I|L}]N[KT]S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[QP]DP[Q{I|L}]V{I|L}H;[H{I|L}]N[KT]SV[{M(Oxidation (M))|F}T];{[YC]|[HE]}VS[KT]AK{M(Oxidation (M))|F};[H{I|L}]GG[KT]SV[{M(Oxidation (M))|F}T] 3.5717;2.3723;2.163;1.8978;1.367;0.89552;0.48626 -;-;-;-;-;-;- 758 + NaN NaN 226208.8 NaN 8338 2846 11184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11187 53.318 NaN 233670 35 0 19706 0.261 -1 GCAYPAPYL 9 49 506.2339798096897 1010.4534066861794 2 506.736572265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _GC(Carbamidomethyl (C))AYPAPYL_ ENSG00000159459|ENST00000290650|UBR1;ENST00000562173.1_1_15:43237529-43242578:-|nuORF 9.347437153973935 0.2795965555214564 2 EY{I|L} 3 -1 28.188 0 0 2.7896 0 0 587.2543812482437 0 587.2543812482437 0 6.160743531280843 0 0 0 0.5 0 0 0 EY{I|L} 2.7896 - 49 NaN NaN 121249.1 NaN 8339 2846 11184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11188 53.321 NaN 213120 35 0 8266.4 0.261 + -1 MLGVKFLDKL 10 70 590.3424848312384 NaN 0 590.3425903320312 PEAK HCD FTMS 0 0 0 11184 15448.2490234375 0.3102533073274271 1 -0.023040771484375 4 Oxidation (M) _M(Oxidation (M))LGVKFLDKL_ REV__ENSG00000174130|ENST00000508254|TLR6 5.296884461304476 0.3356508900602619 2 D{I|L} 2 -1 14.024 0 0 1.1898 0 0 259.19050169561655 688.3465670221311 947.5370687177476 0 0 0 0 0 0.3054621874040891 0 0 0 D{I|L} 1.1898 - 16 + NaN NaN 116157 NaN 8340 2846 11184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11189 53.325 NaN 340410 35 0 21671 0.261 + 7614 FYHNIVNPGC 10 65 582.2684164882161 1162.522280043232 2 582.770263671875 MULTI HCD FTMS 0 0 0 11184 69982.15625 0.4819766338842576 -3 0.058673858642578125 5 Unmodified _FYHNIVNPGC_ REV__ENSG00000172208|ENST00000624868|OR4X2 34.10243960390752 0.1965851268881605 2 YE 2 -1 16.058 0 0 1.3813 0 0 852.3956165998062 0 852.3956165998062 0 2.2454626555970947 0 0 0 0.3494850021680094 0 0 0 YE 1.3813 - 80 NaN NaN 140071.7 NaN 8341 2846 11184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11191 53.333 NaN 680900 35 0 96338 0.327 + 17951 MITDLEERL 9 84 568.2866588488881 1134.5587647645762 2 568.2866821289062 MULTI HCD FTMS 0 0 0 11190 300849.53125 0.36978470316849504 7 -0.132171630859375 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 103.82355648334675 0.003950725192926219 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 107.93 0 0 9.5129 9.5129 89.934 0 0 0 20.973411604194894 72.85789402675582 20.973411604194894 1.7216751192405155 0 2.9247425010840047 2 1.309894379144197 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L} 9.5129;9.3612;8.3707;7.5456 +;-;-;+ + 1446 NaN NaN 199054.8 NaN 8342 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11192 53.337 NaN 528210 35 0 76534 0.261 + 15501 LPDMVVSHL 9 79 513.768193570899 NaN 0 513.76806640625 PEAK HCD FTMS 0 0 0 11190 153232.703125 0.12502869814114578 33 -0.7527427673339844 2 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 85.27202061508552 0.0012647497027627758 2 PD{M(Oxidation (M))|F}VVSQ 7 3 44.545 0 0 4.3436 0 0 113.08512957935916 137.0782869928344 250.16341657219357 0 0 0 0 0 1.6549471895720984 0 0.805462187404089 0 PD{M(Oxidation (M))|F}VVSQ 4.3436 - 159 + NaN NaN 172729.7 NaN 8343 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11193 53.341 NaN 174690 35 0 26132 0.261 + 25176 SALGYLHSL 9 41 480.76113258456735 959.5077122359347 2 480.7610778808594 MULTI HCD FTMS 0 0 0 11190 78423.140625 0.5334902421968346 4 -0.07719039916992188 3 Unmodified _SALGYLHSL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 34.40172386719151 0.0910440009062557 2 {[SA]|[TG]}{I|L}G 4 5 22.747 0 0 2.3707 0 0 0 628.3101153207423 628.3101153207423 7.262809413564639 0 0 0 0 0.805462187404089 0 0 0 + {[SA]|[TG]}{I|L}G 2.3707 + + 28 + NaN NaN 113605.8 NaN 8344 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11194 53.344 NaN 793410 35 0 148610 0.261 + 29373 TYQDIQNTI 9 65 548.2694184151188 1094.5242838970375 2 548.2695922851562 MULTI HCD FTMS 0 0 0 11190 192547.703125 0.05982729052624874 -9 0.18268203735351562 4 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 97.74103586103693 0.004323122048066454 2 [YT]QD{I|L}QNT{I|L} 9 0 + 93.853 0 0 8.5748 8.5748 92.867 0 0 0 20.737862141609185 58.41760034688149 20.737862141609185 9.208187539523749 0 2.079689690656103 2 1.0994850021680094 0 + + [YT]QD{I|L}QNT{I|L};[YT]QD{I|L}QGGT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT]QD{I|L}Q[{I|L}T]N;{[QS]|[NT]}{I|L}EYQNT{I|L};[YT][AG]D{I|L}Q[{I|L}T]N 8.5748;7.7335;7.7335;7.7335;6.8962;6.8962;6.8962;6.6565;6.2634;5.8152 +;-;-;-;-;-;-;-;-;- + 691 NaN NaN 206048.8 NaN 8345 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11195 53.347 NaN 250830 35 0 28626 0.261 + 16077 LPSQEVQAL 9 46 492.7715955405178 983.5286381478356 2 492.77166748046875 MULTI HCD FTMS 0 0 0 11190 50139.4140625 0.3298454088552628 -3 0.055469512939453125 5 Unmodified _LPSQEVQAL_ ENSG00000173992|ENST00000533244|CCS;ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF 20.41453444215458 0.18397929046831515 2 VQA{I|L} 4 5 44.993 0 0 4.5746 0 0 554.270422725483 0 554.270422725483 0 37.2062251842808 0 0 0 1.305462187404089 0 0 0 + VQA{I|L} 4.5746 + + 99 NaN NaN 120905.8 NaN 8346 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11196 53.351 NaN 199160 35 0 28673 0.261 + 29869 VFCHSLVYF 9 63 557.7741072091242 1113.5336614850482 2 557.7745971679688 MULTI HCD FTMS 0 0 0 11190 63751.390625 0.8753149617025877 2 -0.041721343994140625 6 Unmodified _VFCHSLVYF_ ENST00000341166.3_1_8:99205208-99215350:-|nuORF 13.50788311687929 0.24365122550260465 2 V{M(Oxidation (M))|F} 2 7 25.969 0 0 2.3321 0 0 849.3857151190259 0 849.3857151190259 0 9.771212547196626 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.3321 + + 37 NaN NaN 108758 NaN 8347 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11197 53.354 NaN 177300 35 0 11917 0.261 + 16746 LYCVDSGFRL 10 64 586.7916656950093 1171.5687784568186 2 586.77685546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LYCVDSGFRL_ REV__ENST00000342947.7_1_7:24738176-24738260:-|nuORF 10.073929032068715 0.4168838835836452 2 [Y{I|L}]A 3 -1 28.557 0 0 2.4375 0 0 0 821.3643009757748 821.3643009757748 5 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 [Y{I|L}]A 2.4375 - 161 + NaN NaN 127299.5 NaN 8348 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11198 53.357 NaN 107040 35 0 4281.5 0.261 -1 0 45 543.056884765625 NaN 0 543.056884765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 Y 1 -1 3.9794 0 0 0.36707 0 0 218.68080331855623 699.3295382135374 918.0103415320937 0 0 0 0 0 0 0 0 0 Y 0.36707 - 4 + NaN NaN 103726.9 NaN 8349 2847 11190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11200 53.362 NaN 647640 35 0 66652 0.327 + 33448 YGSRLDYFQ 9 79 574.7721624015368 1147.5297718698735 2 574.7725219726562 MULTI HCD FTMS 0 0 0 11199 107406.4765625 0.5317303252652671 13 -0.259613037109375 1 Unmodified _YGSRLDYFQ_ ENSG00000147439|ENST00000276416|BIN3;nc|ENSG00000147439|Q9NQY0-2|BIN3 14.838274106304384 0.23215694253501695 2 {[WN]|[YH]}T[RP]SVS 8 7 51.693 0 0 4.5047 0 0 0 217.06322960168737 217.06322960168737 28.066884185923655 0 0 0 0 1.6237125054200234 1.5228787452803376 0.4247425010840047 0.2614393726401688 {[WN]|[YH]}T[RP]SVS 4.5047 - 406 NaN NaN 179141 NaN 8350 2848 11199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11201 53.366 NaN 326930 35 0 48181 0.261 + 27358 SYSHIMALI 9 61 525.7681721974733 1049.5217914617465 2 525.7688598632812 MULTI HCD FTMS 0 0 0 11199 124304.9921875 0.8342019442189701 -4 0.08443832397460938 2 Oxidation (M) _SYSHIM(Oxidation (M))ALI_ ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 50.855029805455786 0.030374663808198754 2 A{I|L}{I|L} 3 6 36.198 0 0 3.449 0 0 734.3060347532949 0 734.3060347532949 0 20.452490459521968 0 0 0 1 0 0 0 + A{I|L}{I|L} 3.449 + + 40 NaN NaN 137546.9 NaN 8351 2848 11199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11202 53.37 NaN 268670 35 0 72277 0.261 -1 0 53 503.1065147446983 502.0992382780983 1 503.10736083984375 MULTI HCD FTMS 0 0 0 11199 44372.4375 0.5599321733129591 96 -2.1601104736328125 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.6172 0 0 55.886452488838934 296.161663746881 352.04811623571993 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.6172 - 2 + NaN NaN 125585 NaN 8352 2848 11199 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11204 53.375 NaN 674620 35 0 32501 0.327 + 24142 RYCVQLSQI 9 87 555.2924751135089 1108.5703972938177 2 555.7960205078125 MULTI HCD FTMS 0 0 0 11203 192142.359375 0.7431970614215974 1 -0.01940155029296875 1 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 61.60191391372663 0.015340508911304802 2 [YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L}SQ{I|L} 9 1 + 69.548 0 0 6.2737 6.2737 88.996 0 0 0 13.133637307377057 42.71529987308661 13.133637307377057 9.208187539523749 0 1.524227503252014 1.5228787452803376 0.7742275032520141 0.3252574989159953 [YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L}SQ{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{I|L}S[AG]{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[AG]{I|L}SQ{I|L};[YR]{[DS]|[MA]|[CV]|TT}Q{I|L}SQ{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N[{I|L}T]Q{I|L};[YR]{[DS]|[MA]|[CV]|TT}[AG]{I|L}SQ{I|L};[YR]{[DS]|[MA]|[CV]|TT}Q{I|L}S[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{I|L}[QP]Y{[QD]|[EN]|[WG]|[KD]|[RS]};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QVV{[QD]|[EN]|[WG]|[KD]|[RS]};[YR]{[DS]|[MA]|[CV]|TT}N[{I|L}T]Q{I|L} 6.2737;5.443;5.443;4.2694;3.816;3.4388;3.4388;3.0278;2.0423;1.8117 -;-;-;+;-;-;-;-;-;- + 1185 NaN NaN 184563 NaN 8353 2849 11203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11205 53.379 NaN 295670 35 0 46986 0.261 -1 HFDMAVYL 8 63 506.2339798096897 1010.4534066861794 2 506.2341613769531 MULTI HCD FTMS 0 0 0 11203 107859.8671875 0.4810609677009767 -18 0.3680076599121094 2 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 9.347437153973935 0.5250182646323369 2 Y{I|L} 2 -1 25.969 0 0 2.57 0 0 716.2952867024089 0 716.2952867024089 0 5.791812460476251 0 0 0 0.5 0 0 0 Y{I|L} 2.57 + + 75 NaN NaN 136119.8 NaN 8354 2849 11203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11206 53.383 NaN 278360 35 0 62130 0.261 + 24065 RYAAQLPAL 9 51 501.79020797692584 1001.5658630206517 2 501.7903747558594 MULTI HCD FTMS 0 0 0 11203 50873.5703125 0.07922603189453259 -13 0.26013946533203125 3 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 25.399314129420986 0.14091189997036632 2 Q{I|L}PA{I|L} 5 4 46.766 0 0 4.6693 0 0 461.23884780097814 0 461.23884780097814 0 33.2711470149615 0 0 0 1.2302046884880937 0 0 0 + Q{I|L}PA{I|L} 4.6693 + + 41 NaN NaN 133580.6 NaN 8355 2849 11203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11207 53.386 NaN 282960 35 0 30881 0.261 -1 FVCWLCSCCL 10 64 449.8503664725393 1346.529270017818 3 449.8507385253906 MULTI HCD FTMS 0 0 0 11203 75166.875 0.5651596931980839 -1 0.012752532958984375 4 3 Carbamidomethyl (C) _FVC(Carbamidomethyl (C))WLC(Carbamidomethyl (C))SC(Carbamidomethyl (C))CL_ ENST00000259371.6_1_9:124546941-124547178:+|nuORF 1.9063754702782614 0.46521295622613185 2 SA 2 -1 16.198 0 0 1.2029 0 0 0 1185.4233952649406 1185.4233952649406 8.750612633917 0 0 0 0 0 0 0 0 SA 1.2029 - 12 + NaN NaN 130082.6 NaN 8356 2849 11203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11208 53.389 NaN 88988 35 0 13388 0.261 -1 MPQSMPEYAL 10 50 599.7596458789774 1197.5047388247547 2 600.2616577148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Oxidation (M) _M(Oxidation (M))PQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 7.101721422024254 0.4377131641736035 2 YA{I|L} 3 -1 26.198 0 0 2.1877 0 0 832.30668837715 0 832.30668837715 0 18.1259189508755 0 0 0 0 0 0 0 YA{I|L} 2.1877 + + 8 NaN NaN 95387.8 NaN 8357 2849 11203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11210 53.394 NaN 9653100 35 0 2625200 0.327 + 7609 FYHKYFNYL 9 89 432.21330696383626 1293.6180914917088 3 432.2137145996094 MULTI HCD FTMS 0 0 0 11209 4758647 1 0 0 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 41.8396318013385 0.056899836730939755 2 NY{I|L} 3 6 44.693 0 0 3.4549 0 0 885.415172468373 0 885.415172468373 0 33.30575233605657 0 0 0 1 0 0 0.8494850021680094 + NY{I|L} 3.4549 + + 157 NaN NaN 775294.8 NaN 8358 2850 11209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11211 53.399 NaN 348460 35 0 47011 0.261 + 29874 VFDEAIRAV 9 74 510.27963227123945 1018.5447116092789 2 510.2799377441406 MULTI HCD FTMS 0 0 0 11209 154993.421875 0.7040237873615979 3 -0.05158233642578125 2 Unmodified _VFDEAIRAV_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 61.60191391372663 0.015340508911304802 2 [{M(Oxidation (M))|F}V]DEA{I|L}RAV 9 0 + 85.856 0 0 8.4293 8.4293 96.231 0 0 0 11.8538678994733 69.82570335676726 11.8538678994733 27.95880017344075 0 2.805462187404089 1.3979400086720375 0 0 + + [{M(Oxidation (M))|F}V]DEA{I|L}RAV;[{M(Oxidation (M))|F}V]DV[DV]RAV;[YV][TP][DV]RAV 8.4293;5.6844;2.7478 +;-;- + 230 NaN NaN 138246.4 NaN 8359 2850 11209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11212 53.402 NaN 777150 35 0 124500 0.261 + -1 VLIMMMWEEL 10 77 442.8766436268177 1325.6081014806532 3 442.87652587890625 MULTI HCD FTMS 0 0 0 11209 136941.1875 1 0 0 3 2 Oxidation (M) _VLIM(Oxidation (M))M(Oxidation (M))MWEEL_ REV__ENST00000539107.5_2_12:28343406-28458716:+|nuORF;REV__ENST00000545737.5_1_12:28410092-28458713:+|nuORF 6.630372943996041 0.44020808660041416 2 {I|L} 1 -1 19.604 0 0 1.4789 0 0 1194.5135713066281 0 1194.5135713066281 0 2.614393726401687 0 0 0 0.5 0 0 0 {I|L} 1.4789 + + 17 + NaN NaN 196420 NaN 8360 2850 11209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11213 53.405 NaN 497720 35 0 35960 0.261 -1 KCHQCVETI 9 89 559.2602461130803 1116.5059392929604 2 559.260498046875 MULTI HCD FTMS 0 0 0 11209 121046.9296875 0.299521141419769 -8 0.1621856689453125 4 Carbamidomethyl (C) _KCHQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 32.78568957990786 0.09846250359632436 2 [YT]QD{I|L}Q 6 -1 69.786 0 0 6.2504 0 0 0 365.14389795358574 365.14389795358574 38.65234039764886 0 0 0 0 1.8807196863200843 2 0.7614393726401688 0.6989700043360187 [YT]QD{I|L}Q 6.2504 - 3121 + NaN NaN 185393.8 NaN 8361 2850 11209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11215 53.41 NaN 1762200 35 0 140130 0.327 + 7603 FYHKYFNYL 9 116 647.8164504130114 1293.6183478928226 2 647.8165893554688 MULTI HCD FTMS 0 0 0 11214 822067.9375 0.8946030214297938 1 -0.0161285400390625 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 106.94017166704063 0.003441928997083001 2 [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L} 9 0 + 73.867 0 0 5.7101 5.7101 84.497 0 0 0 2.269987279362624 14.189064109264784 2.269987279362624 2.269987279362624 0 2.2302046884880937 0 0 0.7742275032520141 + + [Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKNY{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYN{M(Oxidation (M))|F}Y{I|L};{[WN]|[YH]}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}YN{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKNY{M(Oxidation (M))|F}Y{I|L};{[WN]|[YH]}{M(Oxidation (M))|F}KYN{M(Oxidation (M))|F}Y{I|L} 5.7101;5.5346;5.5114;5.3546;5.124;5.0909;4.9983;4.9755;4.9671;4.8922 +;-;-;-;-;-;-;-;-;- + 6365 NaN NaN 354315.1 NaN 8362 2851 11214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11216 53.415 NaN 848310 35 0 108130 0.263 + 29509 TYVSGTLRF 9 80 522.2797517710965 1042.5449506089928 2 522.2797241210938 MULTI HCD FTMS 0 0 0 11214 291524.40625 0.5224169100170768 3 -0.054981231689453125 2 Unmodified _TYVSGTLRF_ CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 114.20165948288297 0.0022564706844261533 2 [YT]VSGT{I|L}R{M(Oxidation (M))|F} 9 0 + 101.93 0 0 9.7775 9.7775 96.622 0 0 0 15.243500300354142 15.243500300354142 15.243500300354142 17.632965752203233 0 2.555462187404089 1.6989700043360187 1.079689690656103 0 + + [YT]VSGT{I|L}R{M(Oxidation (M))|F};[YT]V[KT]ER{M(Oxidation (M))|F};{I|L}[HA]EGTVVA{M(Oxidation (M))|F};[VS][YT]GT{I|L}R{M(Oxidation (M))|F};{[CA]|SS}[Y{I|L}]GT{I|L}R{M(Oxidation (M))|F};{[CA]|SS}{[TV]|[{I|L}S]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{M(Oxidation (M))|F} 9.7775;8.0862;4.9241;3.2196;3.1554;1.4278 +;-;-;-;-;- + 599 + NaN NaN 218308.8 NaN 8363 2851 11214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11217 53.418 NaN 281470 35 0 11997 0.261 + 22755 QYIDKLNAL 9 72 539.3004887527151 1076.58642457223 2 539.30078125 MULTI HCD FTMS 0 0 0 11214 65310.76953125 0.4744359907598305 1 -0.0161285400390625 3 Unmodified _QYIDKLNAL_ ENSG00000015133|ENST00000389857|CCDC88C 18.1463463914782 0.20357593197100715 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[KG]T{I|L} 7 6 18.31 0 0 1.7008 0 0 0 288.0980572228738 288.0980572228738 6.856574289355191 0 0 0 0 0.2614393726401688 1.3010299956639813 0 0.28872548999643577 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[KG]T{I|L} 1.7008 - 534 NaN NaN 151563.5 NaN 8364 2851 11214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11218 53.421 NaN 79196 35 0 5156.9 0.261 + 2010 DCEMYKHRM 9 36 606.7519216303536 NaN 0 607.0397338867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _DCEMYKHRM_ ENSG00000198286|ENST00000396946|CARD11 0.5247636613948944 0.2927039108006614 2 D 1 8 3.9794 0 0 0.32847 0 0 508.73759462613845 584.7098482721311 1093.4474428982696 0 0 0 0 0 0 0 0 0 + D 0.32847 + + 3 + NaN NaN 96123.6 NaN 8365 2851 11214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11220 53.426 NaN 1017500 35 0 241900 0.327 + 27814 TAYNLVHEL 9 77 530.2771267405135 1058.539700547827 2 530.26123046875 MULTI HCD FTMS 0 0 0 11219 187084.8125 0.7898816954808481 -2 0.032196044921875 1 Unmodified _TAYNLVHEL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 91.08480475639789 0.0044975408722150376 2 [TA]YN{I|L}VHE{I|L} 9 0 + 83.237 0 0 7.8634 7.8634 88.947 0 0 0 15.079219532557929 61.08353795390225 15.079219532557929 4.124379954164581 0 2.4247425010840047 0 0.9436726795685342 1.0501648626366045 + + [TA]YN{I|L}VHE{I|L};[TA]YQVVHE{I|L};[TA]YN{I|L}V[QP][PG];TA[QP]V{I|L}NY[PG];[TA]YGG{I|L}VHE{I|L};[TA]Y[AG]VVHE{I|L};[TA]YQVV[QP][PG];TA[QP]VVQY[PG];TA[QP]VV[NP]S{M(Oxidation (M))|F};TAYN{I|L}V[QP][PG] 7.8634;7.4738;6.2429;6.1781;6.0014;5.8845;5.8533;5.7885;5.4188;5.3993 +;-;-;-;-;-;-;-;-;- + 654 NaN NaN 244923.1 NaN 8366 2852 11219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11221 53.431 NaN 383940 35 0 48330 0.261 + 16725 LYANMFERL 9 85 586.7916656950093 1171.5687784568186 2 586.7923583984375 MULTI HCD FTMS 0 0 0 11219 118626.265625 0.32862637631387465 -6 0.11635971069335938 2 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 71.70789743142352 0.008535567138151097 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 91.518 0 0 7.8116 7.8116 91.73 0 0 0 70.57570277971656 9.009461452434238 9.009461452434238 9.208187539523749 0 1.819341519366547 2 0.5 0.3252574989159953 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]{[ET]|[MV]}H[H{I|L}]{M(Oxidation (M))|F}{I|L} 7.8116;7.0256;4.9102;2.466 +;-;+;- + 302 + NaN NaN 141691.6 NaN 8367 2852 11219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11222 53.434 NaN 287770 35 0 18229 0.261 + 15562 LPDQPPYHL 9 77 540.2796777783375 1078.5448026234749 2 540.2802734375 MULTI HCD FTMS 0 0 0 11219 55070.6328125 0.06397845275605844 14 -0.279449462890625 3 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 29.84058131909904 0.11198220037953927 2 {I|L}PDQ[VS]VQ 8 5 40.399 0 0 3.7457 0 0 0 209.05640588931877 209.05640588931877 24.724797210082343 0 0 0 0 0.8494850021680094 0 0.7302046884880937 0.4247425010840047 {I|L}PDQ[VS]VQ 3.7457 - 520 + NaN NaN 142063 NaN 8368 2852 11219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11223 53.438 NaN 263090 35 0 43010 0.261 + 12902 KYGFGYQL 8 66 488.2505370147659 974.4865210963318 2 488.2506408691406 MULTI HCD FTMS 0 0 0 11219 95371.0234375 0.23736376097561507 -5 0.09331893920898438 4 Unmodified _KYGFGYQL_ ENSG00000145632|ENST00000274289|PLK2;ENSG00000185988|ENST00000454744|PLK5;nc|ENSG00000185988|Q496M5-2|PLK5 64.23631603340823 0.039635161348402365 2 [YK]G{M(Oxidation (M))|F}GYQ{I|L} 8 0 + 49.602 0 0 5.0901 5.0901 87.827 0 0 0 3.979400086720375 34.11745028500839 3.979400086720375 9.262137858390815 0 1.1989700043360187 0 0 0.4247425010840047 + + [YK]G{M(Oxidation (M))|F}GYQ{I|L};[YK]G{M(Oxidation (M))|F}GY[AG]{I|L};[YK]G{M(Oxidation (M))|F}G[{M(Oxidation (M))|F}E]K;{[QN]|[E{I|L}]|[KN]}[DV]WWK 5.0901;4.1396;2.8059;0.8143 +;-;-;- + 264 NaN NaN 128342 NaN 8369 2852 11219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11224 53.441 NaN 111740 35 0 9111.7 0.261 + 14356 LEATRWLA 8 51 480.2693535229921 NaN 0 480.2552795410156 PEAK HCD FTMS 0 0 0 11219 30853.900390625 1 0 0 5 Unmodified _LEATRWLA_ ENST00000360105.8_1_19:13207240-13207303:+|nuORF 2.577480529830294 0.38822285293237185 2 {I|L}G 2 7 7.0783 0 0 0.73846 0 0 157.08422598954047 628.3145235650999 785.3987495546403 0 0 0 0 0 0 0 0 0 {I|L}G 0.73846 - 4 + NaN NaN 100408.9 NaN 8370 2852 11219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11226 53.446 NaN 816080 35 0 45765 0.327 + 6017 FPDRIMNTF 9 102 578.7762597744046 1155.537966615609 2 578.776611328125 MULTI HCD FTMS 0 0 0 11225 349300.375 0.5976457564662457 5 -0.10057830810546875 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 154.7525637096362 3.8021791163654463E-06 2 {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 9 0 + 93.982 0 0 8.1332 8.1332 89.263 0 0 0 56.76984196810625 16.478174818886373 16.478174818886373 3.8785380374554705 0 2.9634679910804405 0 2.4353167406967966 0.5994850021680094 + + {M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}R{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};[DP]R{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 8.1332;7.7976;7.5872;7.099;7.0007;6.7904;5.693;5.4827;4.8962;4.8546 +;-;+;-;-;-;-;-;-;- + 1614 + NaN NaN 204374.7 NaN 8371 2853 11225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11227 53.45 NaN 515440 35 0 81109 0.261 + 10219 IHFLAWFL 8 73 523.7971131530796 NaN 0 523.7852783203125 PEAK HCD FTMS 0 0 0 11225 18656.4140625 0.7037099820957775 1 -0.019466400146484375 2 Unmodified _IHFLAWFL_ ENSG00000179869|ENST00000435803|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13 11.114462752807354 0.38822285293237185 2 G{I|L}A 3 6 11.427 0 0 1.0929 0 0 384.2710512359909 417.14179407291255 801.4128453089035 0 0 0 0 0 0 0 0 0 G{I|L}A 1.0929 - 148 + NaN NaN 163584 NaN 8372 2853 11225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11228 53.454 NaN 826010 35 0 127640 0.261 + 8250 GSYMMECLTN 10 84 574.7252399315836 1147.435926929967 2 574.72509765625 MULTI HCD FTMS 0 0 0 11225 171011.484375 0.6869556670319011 -3 0.05158233642578125 3 Unmodified _GSYMMECLTN_ ENSG00000146085|ENST00000274813|MMUT 8.745405648335112 0.42901288225909884 2 {[WN]|[YH]}R 3 9 23.367 0 0 2.0364 0 0 0 688.1808054302202 688.1808054302202 1.4997506492568426 0 0 0 0 0 1.5228787452803376 0 0.28872548999643577 {[WN]|[YH]}R 2.0364 - 168 NaN NaN 212044.4 NaN 8373 2853 11225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11229 53.457 NaN 367230 35 0 41922 0.261 + 33244 YFHNIVNPGC 10 65 582.2684164882161 1162.522280043232 2 582.269775390625 MULTI HCD FTMS 0 0 0 11225 79881.0078125 0.6952136332671692 1 -0.019466400146484375 4 Unmodified _YFHNIVNPGC_ REV__ENSG00000180090|ENST00000323404|OR3A1;REV__nc|ENSG00000180068|P47883|OR3A4P 21.74664581756881 0.3077012291670537 2 [YN]{M(Oxidation (M))|F}[YK]H 6 -1 23.478 0 0 2.0196 0 0 0 307.1088045709594 307.1088045709594 8.78530614985209 0 0 0 0 0.7614393726401688 1.5228787452803376 0 0 [YN]{M(Oxidation (M))|F}[YK]H 2.0196 - 233 + NaN NaN 143548.5 NaN 8374 2853 11225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11230 53.46 NaN 118730 35 0 19437 0.264 + 12163 KKKKKKVKKI 10 52 419.31559279656494 NaN 0 419.3156433105469 PEAK HCD FTMS 0 0 0 11225 70602.2265625 0.7758305932270978 2 -0.02901458740234375 5 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 2 E 1 -1 5.4846 0 0 0.65556 0 0 165.27763682859523 539.2746676080686 704.5523044366639 0 0 0 0 0 0 0 0 0 E 0.65556 - 12 + NaN NaN 107507.1 NaN 8375 2853 11225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11232 53.465 NaN 306180 35 0 29633 0.327 + 10140 IFNPVSKNF 9 68 533.2882165780924 1064.5618802229847 2 533.791748046875 MULTI HCD FTMS 0 0 0 11231 59318.16015625 0.6658799269601526 4 -0.08111190795898438 1 Unmodified _IFNPVSKNF_ ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF 18.1463463914782 0.20357593197100715 2 NE{I|L} 3 8 25.974 0 0 2.4399 0 0 690.3724910379029 0 690.3724910379029 0 10.489634511125061 0 0 0 0.8807196863200843 0 0 0 NE{I|L} 2.4399 - 66 NaN NaN 132137.6 NaN 8376 2854 11231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11233 53.47 NaN 90158 35 0 10637 0.262 + 20747 PGEKPHERVRL 11 47 439.9175233859349 NaN 0 439.5829772949219 PEAK HCD FTMS 0 0 0 11231 7296.998046875 0.45930396951925356 2 -0.04203033447265625 2 Unmodified _PGEKPHERVRL_ REV__ENSG00000089177|ENST00000354981|KIF16B;REV__KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant;REV__nc|ENSG00000089177|Q96L93-2|KIF16B;REV__nc|ENSG00000089177|Q96L93-4|KIF16B;REV__nc|ENSG00000089177|Q96L93-5|KIF16B;REV__nc|ENSG00000089177|Q96L93-6|KIF16B 1.1097533296519684 0.33897209286470975 2 W 1 -1 5.4846 0 0 0.62479 0 0 253.5153265912042 435.2107332818969 688.7260598731011 0 0 0 0 0 0 0 0 0 W 0.62479 - 5 + NaN NaN 116497.5 NaN 8377 2854 11231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11235 53.475 NaN 4860900 35 0 900390 0.327 + 29374 TYQDIQNTI 9 111 548.2694184151188 1094.5242838970375 2 548.2696533203125 MULTI HCD FTMS 0 0 0 11234 2944389.5 0.9148633984201741 -1 0.009548187255859375 1 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 192.32093250933514 2.3286398909669E-13 2 [YT]QD{I|L}QNT{I|L} 9 0 + 109.4 0 0 9.9951 9.9951 94.151 0 0 0 10.382666847163136 15.083559388717376 10.382666847163136 9.208187539523749 0 2.3979400086720375 2 1.6976212463643423 0.6382104921644451 + + [YT]QD{I|L}QNT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT]QD{I|L}QGGT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}QN{I|L}T;[YT][AG]D{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT]QD{I|L}[AG]GGT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L} 9.9951;9.1538;9.1538;9.1538;9.0465;8.617;8.3165;8.3165;8.3165;8.2052 +;-;-;-;-;-;-;-;-;- + 10177 NaN NaN 815932.5 NaN 8378 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11236 53.479 NaN 452650 35 0 48952 0.261 + 17952 MITDLEERL 9 82 568.2866588488881 1134.5587647645762 2 568.2860717773438 MULTI HCD FTMS 0 0 0 11234 118994.625 0.14626046416441402 15 -0.3391456604003906 2 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 84.5221896805406 0.004669506596793478 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 104.85 0 0 9.2413 9.2413 89.655 0 0 0 19.889917747712644 88.98423633616338 19.889917747712644 1.549471895720984 0 2 2 1.3243923658886185 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KA][QA]DTE{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DT{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KA][QA]DT{I|L}E;{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]RE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[R{M(Oxidation (M))|F}]TE{I|L} 9.2413;9.1047;8.2199;7.1953;5.2481;5.0487;4.2266;4.0272;2.8796;2.6251 -;+;-;+;-;-;-;-;-;- + 1060 NaN NaN 150574.9 NaN 8379 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11237 53.482 NaN 226830 35 0 24626 0.262 + 16078 LPSQEVQAL 9 52 492.7715955405178 983.5286381478356 2 492.77191162109375 MULTI HCD FTMS 0 0 0 11234 67111.9921875 0.441500622136975 5 -0.1306610107421875 3 Unmodified _LPSQEVQAL_ ENSG00000173992|ENST00000533244|CCS;ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF 20.41453444215458 0.18397929046831515 2 VQA{I|L} 4 5 41.542 0 0 4.2238 0 0 554.2684803693375 0 554.2684803693375 0 34.55259398656281 0 0 0 1.3494850021680094 0 0 0 + VQA{I|L} 4.2238 + + 70 NaN NaN 128124.1 NaN 8380 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11238 53.486 NaN 331280 35 0 35414 0.261 + -1 CIKLMRVF 8 69 533.8008729102011 NaN 0 533.7909545898438 PEAK HCD FTMS 0 0 0 11234 11849.4130859375 1 0 0 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))IKLMRVF_ REV__ENST00000327470.4_1_11:22645918-22646086:-|nuORF 11.114462752807354 0.38822285293237185 2 {M(Oxidation (M))|F}N 2 -1 7.9588 0 0 0.74689 0 0 114.10508947098954 687.3489461945829 801.4540356655725 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 0.74689 - 69 + NaN NaN 135125.6 NaN 8381 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11239 53.489 NaN 183680 35 0 17369 0.262 + 24812 RYPLLLQKI 9 69 572.3659663502481 1142.717379767296 2 572.3665161132812 MULTI HCD FTMS 0 0 0 11234 42079.65234375 0.22364306815526327 -16 0.3081207275390625 5 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 18.1463463914782 0.20357593197100715 2 Q{I|L}{I|L} 3 7 21.682 0 0 1.8974 0 0 259.189258936704 526.2779635065061 785.4672224432102 0 0 0 0 0 1.0484550065040281 0 0 0 Q{I|L}{I|L} 1.8974 - 99 + NaN NaN 115462.3 NaN 8382 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11240 53.492 NaN 262440 35 0 18545 0.261 + 22089 QHTFGSKGAF 10 72 540.2675900033604 NaN 0 540.2798461914062 PEAK HCD FTMS 0 0 0 11234 11156.8427734375 0.5815507828120966 -1 0.009548187255859375 6 Unmodified _QHTFGSKGAF_ ENSG00000183145|ENST00000329553|RIPPLY3 10.823927491677226 0.33092050725491123 2 Q{NN|[MP]|[D{I|L}]|[EV]}E 4 9 11.599 0 0 1.0754 0 0 265.1283567698486 325.15204797916255 590.2804047490112 0 0 0 0 0 0 0 0.6549471895720985 0.4247425010840047 Q{NN|[MP]|[D{I|L}]|[EV]}E 1.0754 - 152 + NaN NaN 118520.8 NaN 8383 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11241 53.496 NaN 104870 35 0 6163.8 0.261 + 19521 NRSHVYAI 8 44 480.25520227767527 NaN 0 480.2551574707031 PEAK HCD FTMS 0 0 0 11234 11935.123046875 0.41225536858395945 4 -0.10444259643554688 7 Unmodified _NRSHVYAI_ ENSG00000145723|ENST00000399004|GIN1;nc|ENSG00000145723|Q9NXP7-3|GIN1 2.577480529830294 0.38822285293237185 2 A 1 7 6.9897 0 0 0.72924 0 0 132.09899344904073 752.3370513472669 884.4360447963077 0 0 0 0 0 0 0 0 0 + A 0.72924 + + 3 + NaN NaN 91929.6 NaN 8384 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11242 53.499 NaN 213370 35 0 50088 0.261 + 33974 YLTRDDVL 8 39 497.76373170010976 993.5129104670195 2 497.7641906738281 MULTI HCD FTMS 0 0 0 11234 54148.06640625 0.11613798748630162 -7 0.11275100708007812 8 Unmodified _YLTRDDVL_ ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE 12.531546534597751 0.5015908124873912 2 [Y{I|L}]{[DS]|[MA]|[CV]|TT}{[RE]|[WV]}V{I|L} 8 3 + 33.874 0 0 3.4095 3.4095 88.955 0 0 0 7.904849854573683 16.88424994129406 7.904849854573683 33.873949984654246 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{[DS]|[MA]|[CV]|TT}{[RE]|[WV]}V{I|L} 3.4095 - 11 NaN NaN 104138.9 NaN 8385 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11243 53.502 NaN 60329 35 0 4018.2 0.261 + 12343 KMYILLQRW 9 34 625.8592529296875 NaN 0 625.8592529296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _KMYILLQRW_ REV__ENST00000282356.8_1_5:110712633-110784871:+|nuORF 0.5247636613948944 0.2927039108006614 2 {I|L} 1 -1 6.9897 0 0 0.55931 0 0 642.8830154279311 490.7131746881469 1133.596190116078 0 0 0 0 0 0 0 0 0 {I|L} 0.55931 + + 3 + NaN NaN 99569.1 NaN 8386 2855 11234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11245 53.507 NaN 391920 35 0 52398 0.327 + 15502 LPDMVVSHL 9 65 513.768193570899 NaN 0 513.76806640625 PEAK HCD FTMS 0 0 0 11244 112431.8125 0.09173761775289704 42 -0.9812545776367188 1 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 65.23502041540118 0.015547834519309937 2 PD{M(Oxidation (M))|F}VVS 6 3 40.935 0 0 3.9916 0 0 113.08527681453138 265.12937341861567 378.21465023314704 0 0 0 0 0 1.579689690656103 0 0.4247425010840047 0 + PD{M(Oxidation (M))|F}VVS 3.9916 + + 128 + NaN NaN 139346.7 NaN 8387 2856 11244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11246 53.512 NaN 527810 35 0 29481 0.261 + 8049 GHGGGRLQSQL 11 88 555.2924751135089 1108.5703972938177 2 555.7953491210938 MULTI HCD FTMS 0 0 0 11244 88131.3359375 0.3408876111491728 8 -0.15612411499023438 2 Unmodified _GHGGGRLQSQL_ AluY_dup5563|chr1:153565030-153565335:+|2.6619431302774155|0.3334509562957031|3.0|521.0|6|2|sense 49.52724829834842 0.08335959434070021 2 SQ{I|L}D{M(Oxidation (M))|F}Q{I|L} 7 8 72.515 0 0 6.5413 0 0 259.15294081855626 0 259.15294081855626 0 48.340766528098555 0 0 0 0.8494850021680094 0 1.9802046884880937 0.566901560044258 SQ{I|L}D{M(Oxidation (M))|F}Q{I|L} 6.5413 - 2591 NaN NaN 176753.1 NaN 8388 2856 11244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11247 53.515 NaN 56063 35 0 8036.4 0.261 + 5374 FGLHHVNF 8 34 485.7488334915703 NaN 0 485.7489318847656 PEAK HCD FTMS 0 0 0 11244 6622.14892578125 0.357350024646899 1 -0.012866973876953125 3 Unmodified _FGLHHVNF_ ENSG00000115850|ENST00000264162|LCT 0.7936320650641473 0.38822285293237185 2 D 1 8 3.9794 0 0 0.41047 0 0 288.1079442274781 563.3364521004886 851.4443963279666 0 0 0 0 0 0 0 0 0 D 0.41047 - 1 + NaN NaN 90935.4 NaN 8389 2856 11244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11249 53.52 NaN 5422200 35 0 1648700 0.327 + 7610 FYHKYFNYL 9 88 432.21330696383626 1293.6180914917088 3 432.21356201171875 MULTI HCD FTMS 0 0 0 11248 2373579 0.49879282913819833 7 -0.14325714111328125 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 47.748688679222035 0.03472022231463587 2 N{M(Oxidation (M))|F}Y{I|L} 4 6 50.662 0 0 3.9163 0 0 738.3508835261591 0 738.3508835261591 0 39.69273760456403 0 0 0 1 0 0 1.3494850021680094 N{M(Oxidation (M))|F}Y{I|L} 3.9163 - 432 NaN NaN 672404.6 NaN 8390 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11250 53.525 NaN 871610 35 0 249800 0.261 + 24066 RYAAQLPAL 9 55 501.79020797692584 1001.5658630206517 2 501.7903137207031 MULTI HCD FTMS 0 0 0 11248 392030.15625 0.610513346554914 -5 0.09375 2 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 85.27202061508552 0.004649858145912257 2 [YR]AAQ{I|L}PA{I|L} 9 0 + 81.865 0 0 8.1737 8.1737 92.292 0 0 0 4.137342758552691 54.41753481464637 4.137342758552691 9.208187539523749 0 2.6549471895720984 0 0 1.274227503252014 + + [YR]AAQ{I|L}PA{I|L};[YR]AA[AG]{I|L}PA{I|L} 8.1737;7.2543 +;- + 362 NaN NaN 218952 NaN 8391 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11251 53.528 NaN 412200 35 0 89922 0.261 -1 HFDMAVYL 8 62 506.2339798096897 1010.4534066861794 2 506.23406982421875 MULTI HCD FTMS 0 0 0 11248 130135.4609375 0.5804113467150787 -10 0.18706893920898438 3 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 {[DS]|[MA]|[CV]|TT}DNWVY{I|L} 8 -1 + 34.531 0 0 3.4173 3.4173 89.006 0 0 0 2.0956906361298877 17.54100322985387 2.0956906361298877 34.53070327321406 0 1.1677353201839438 0 0 0 {[DS]|[MA]|[CV]|TT}DNWVY{I|L} 3.4173 - 67 NaN NaN 147204.1 NaN 8392 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11252 53.532 NaN 547050 35 0 38196 0.261 + 24143 RYCVQLSQI 9 91 555.2924751135089 1108.5703972938177 2 555.2919921875 MULTI HCD FTMS 0 0 0 11248 86676.21875 0.22151534137489162 18 -0.44138336181640625 4 Unmodified _RYCVQLSQI_ CON__P02535-1;CON__P13645;CON__Q04695;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;ENSG00000186395|ENST00000269576|KRT10;TPT1-KRT17|1|fusion 47.594388314883695 0.03493607795751234 2 NQ{I|L}D{M(Oxidation (M))|F}Q{I|L} 7 6 59.573 0 0 5.3739 0 0 232.14216811347814 0 232.14216811347814 0 16.969325423318445 0 0 0 0.7396518287104438 0 1.2302046884880937 0.6694451763165201 NQ{I|L}D{M(Oxidation (M))|F}Q{I|L} 5.3739 - 2266 NaN NaN 166170.4 NaN 8393 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11253 53.535 NaN 281670 35 0 28721 0.261 + 2352 DPDGHEICF 9 64 516.7082141429077 1031.4018753526152 2 516.7083740234375 MULTI HCD FTMS 0 0 0 11248 74620.7578125 0.5684319171241994 -4 0.07436370849609375 5 Unmodified _DPDGHEICF_ ENSG00000167699|ENST00000301329|GLOD4;ENST00000576239.5_1_17:663415-673427:-|nuORF;nc|ENSG00000167699|Q9HC38|GLOD4 11.640296217721598 0.25978676193971967 2 DC{M(Oxidation (M))|F} 3 6 33.188 0 0 3.2177 0 0 648.2865467755875 0 648.2865467755875 0 32.21848749616356 0 0 0 1 0 0 0 DC{M(Oxidation (M))|F} 3.2177 - 11 NaN NaN 136695.7 NaN 8394 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11254 53.538 NaN 92515 35 0 8229 0.261 + 29875 VFDEAIRAV 9 52 510.27963227123945 1018.5447116092789 2 510.2805480957031 MULTI HCD FTMS 0 0 0 11248 36297.234375 0.16487226429550098 10 -0.22523880004882812 6 Unmodified _VFDEAIRAV_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 40.23920728925047 0.06424668180817725 2 {I|L}AEDEV 6 7 56.688 0 0 5.5655 0 0 344.2167225568375 0 344.2167225568375 0 49.24024714504206 0 0 0 1.7302046884880937 0 0 0 {I|L}AEDEV 5.5655 - 37 NaN NaN 112002.2 NaN 8395 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11255 53.541 NaN 125660 35 0 14845 0.261 -1 FLSMSISHL 9 50 525.7681721974733 1049.5217914617465 2 525.7679443359375 MULTI HCD FTMS 0 0 0 11248 46175.125 0.3098779732953271 5 -0.1110687255859375 7 Oxidation (M) _FLSM(Oxidation (M))SISHL_ ENST00000327892.12_1_6:30692576-30692831:+|nuORF 7.910154910731844 0.2910521888787154 2 A{I|L}{I|L} 3 -1 23.188 0 0 2.2093 0 0 734.3072376935562 0 734.3072376935562 0 17.703037561203843 0 0 0 0 0 0 0 A{I|L}{I|L} 2.2093 - 10 NaN NaN 106431.6 NaN 8396 2857 11248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11257 53.546 NaN 971180 35 0 79195 0.327 + 7604 FYHKYFNYL 9 87 647.8164504130114 1293.6183478928226 2 647.8168334960938 MULTI HCD FTMS 0 0 0 11256 363963.375 0.3960776477367299 8 -0.15948486328125 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 70.33199760932243 0.0089807860198535 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L} 9 2 + 74.025 0 0 5.7224 5.7224 84.459 0 0 0 2.1040937697618745 16.478174818886373 2.1040937697618745 2.1040937697618745 0 1.5356668758921828 0 1.0114393726401687 0.7742275032520141 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYN{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HKNY{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYGG{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKNY{M(Oxidation (M))|F}Y{I|L} 5.7224;5.5597;5.3852;5.2964;5.0105;4.8479;4.8143;4.6734;4.5846;4.5234 -;+;-;-;-;-;-;-;-;- + 2434 NaN NaN 235689.3 NaN 8397 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11258 53.551 NaN 939870 35 0 70603 0.262 -1 KCHQCVETI 9 101 559.2602461130803 1116.5059392929604 2 559.2603759765625 MULTI HCD FTMS 0 0 0 11256 404134.84375 1 0 0 2 Carbamidomethyl (C) _KCHQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 38.175570920033316 0.07371992880350783 2 GQ{I|L}DQV{M(Oxidation (M))|F} 7 -1 80.499 0 0 7.2099 0 0 311.1482105939469 0 311.1482105939469 0 42.84756513278451 0 0 0 2.004432191740108 0 0.9916440611282625 1.0941876774005248 GQ{I|L}DQV{M(Oxidation (M))|F} 7.2099 - 5999 NaN NaN 236585.6 NaN 8398 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11259 53.554 NaN 539510 35 0 34373 0.261 + 2069 DENEFQSLQ 9 87 555.239572484171 1108.464592035142 2 555.259033203125 MULTI HCD FTMS 0 0 0 11256 26548.130859375 0.41514607368335404 -7 0.1360931396484375 3 Unmodified _DENEFQSLQ_ REV__ENSG00000138646|ENST00000264350|HERC5;REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF;REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF 20.453626601364224 0.18364154288633264 2 MTNQC(Carbamidomethyl (C))QS[Q{I|L}] 9 -1 + 55.438 0 0 5.0013 5.0013 82.803 0 0 0 13.46787486224656 1.1263423094075407 1.1263423094075407 1.1263423094075407 0 0 0 1.7931576817365436 0.6694451763165201 MTNQC(Carbamidomethyl (C))QS[Q{I|L}];MTNQC(Carbamidomethyl (C))QN[{I|L}T];MTNQ[CG]QS[Q{I|L}];MTGGQC(Carbamidomethyl (C))QS[Q{I|L}];MTN[AG]C(Carbamidomethyl (C))QS[Q{I|L}];MTNQC(Carbamidomethyl (C))[AG]S[Q{I|L}];MTGGQC(Carbamidomethyl (C))QN[{I|L}T];MTN[AG]C(Carbamidomethyl (C))QN[{I|L}T];MTNQ[CG]QN[{I|L}T];MTNQC(Carbamidomethyl (C))[AG]N[{I|L}T] 5.0013;4.8997;4.1706;4.1706;4.1706;4.1706;4.069;4.069;4.069;4.069 -;-;-;-;-;-;-;-;-;- 2037 + NaN NaN 169597.5 NaN 8399 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11260 53.558 NaN 569990 35 0 114140 0.261 + 11426 IYPVKYTQTF 10 50 630.3372029870114 1258.6598530408228 2 630.8395385742188 MULTI HCD FTMS 0 0 0 11256 141491.390625 0.5994685880133146 -2 0.039081573486328125 4 Unmodified _IYPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 40.72490554402381 0.1391161235525472 2 [Y{I|L}][VP][YK]TQT{M(Oxidation (M))|F} 10 0 + 62.866 0 0 4.9946 4.9946 91.85 0 0 0 6.861818737241734 6.861818737241734 6.861818737241734 62.865612383257385 0 2.274227503252014 1.6989700043360187 0 0 + + [Y{I|L}][VP][YK]TQT{M(Oxidation (M))|F} 4.9946 + + 31 NaN NaN 179515.2 NaN 8400 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11261 53.561 NaN 157250 35 0 28615 0.264 + -1 DDLFCWRPSL 10 50 436.8727450191196 1307.5964056575588 3 436.8729553222656 MULTI HCD FTMS 0 0 0 11256 42726.91015625 0.26264957913496834 7 -0.1431884765625 5 Carbamidomethyl (C) _DDLFC(Carbamidomethyl (C))WRPSL_ REV__nc|ENSG00000157680|O75912|DGKI 3.5870582119611467 0.4563168352879256 2 {I|L} 1 -1 19.604 0 0 1.4992 0 0 1176.5020585890024 0 1176.5020585890024 0 6.109243748081781 0 0 0 0.5 0 0 0 {I|L} 1.4992 + + 14 + NaN NaN 106166 NaN 8401 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11262 53.564 NaN 443850 35 0 31953 0.261 + 4537 EYLGKLVRF 9 76 562.826716575445 1123.6388802176898 2 563.3280639648438 MULTI HCD FTMS 0 0 0 11256 75570.765625 0.7568525731542176 -1 0.026214599609375 6 Unmodified _EYLGKLVRF_ ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF 60.07390631473393 0.0174780869009295 2 EY{I|L}GK{I|L}VR{M(Oxidation (M))|F} 9 0 + 83.351 0 0 7.418 7.418 96.066 0 0 0 65.39258754269092 11.39506772603255 11.39506772603255 68.46646621966377 0 1.1747425010840047 1.6989700043360187 0 0 + + EY{I|L}GK{I|L}VR{M(Oxidation (M))|F};[KG]{I|L}[{I|L}V][YE]R{M(Oxidation (M))|F} 7.418;1.3247 +;- + 154 + NaN NaN 156108.2 NaN 8402 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11263 53.568 NaN 105900 35 0 6751.7 0.261 + 5428 FHVFLEYNQ 9 48 598.788550608824 NaN 0 598.7891235351562 PEAK HCD FTMS 0 0 0 11256 18534.888671875 0.5493117759210887 1 -0.032878875732421875 7 Unmodified _FHVFLEYNQ_ ENSG00000129515|ENST00000362031|SNX6;ENST00000556162.5_1_14:35032330-35073396:-|nuORF;ENST00000601728.1_1_19:23310047-23310578:-|nuORF;nc|ENSG00000129515|Q9UNH7-2|SNX6 2.302733041254933 0.2840881193086663 2 EV 2 8 7.9588 0 0 0.6657 0 0 132.09985415474722 832.3317965143186 964.4316506690659 0 0 0 0 0 0 0 0 0 EV 0.6657 - 8 + NaN NaN 102735.6 NaN 8403 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11264 53.571 NaN 174180 35 0 12679 0.261 -1 YPESESIMM 9 55 551.7250679951753 1101.4355830571506 2 551.7254638671875 MULTI HCD FTMS 0 0 0 11256 36423.18359375 0.5627131333697478 -13 0.24920272827148438 8 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}M 5 -1 32.179 0 0 2.9216 0 0 458.1857166974625 0 458.1857166974625 0 28.19984993812689 0 0 0 0.9247425010840047 0 0.7614393726401688 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}M 2.9216 - 59 NaN NaN 106573.3 NaN 8404 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11265 53.574 NaN 113540 35 0 12113 0.261 + 14397 LEIQWWYLK 9 41 639.8496009310114 1277.6846489288228 2 639.8516235351562 MULTI HCD FTMS 0 0 0 11256 31284.744140625 0.8082173139201195 -2 0.039081573486328125 9 Unmodified _LEIQWWYLK_ ENSG00000187135|ENST00000335523|VSTM2B 2.9952420565917617 0.3283108881486655 2 V 1 9 6.9897 0 0 0.54706 0 0 323.187103618079 852.4088839166624 1175.5959875347414 0 0 0 0 0 0 0 0 0 V 0.54706 - 4 + NaN NaN 105025.2 NaN 8405 2858 11256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11267 53.579 NaN 632130 35 0 67543 0.327 + 16726 LYANMFERL 9 97 586.7916656950093 1171.5687784568186 2 586.7923583984375 MULTI HCD FTMS 0 0 0 11266 272618.09375 0.7552247876525757 1 -0.026218414306640625 1 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 96.93554129104106 0.004344229100022454 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 103.13 0 0 8.8023 8.8023 93.14 0 0 0 65.02562486105688 9.009461452434238 9.009461452434238 9.208187539523749 0 2.2034021960761265 2 1.1643943297944483 0.2614393726401688 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{[RE]|[WV]}MNY{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]A{[RE]|[WV]}MGGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[RE]|[WV]}MNY{I|L} 8.8023;8.0163;6.6514;6.057;5.8654;5.7519;5.6488;5.2782;4.9659;4.8732 +;-;-;+;-;-;-;-;-;- + 1448 + NaN NaN 187347.1 NaN 8406 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11268 53.584 NaN 460640 35 0 73930 0.262 + 12903 KYGFGYQL 8 79 488.2505370147659 974.4865210963318 2 488.2505798339844 MULTI HCD FTMS 0 0 0 11266 354534.4375 0.882381508000939 2 -0.04241943359375 2 Unmodified _KYGFGYQL_ ENSG00000145632|ENST00000274289|PLK2;ENSG00000185988|ENST00000454744|PLK5;nc|ENSG00000185988|Q496M5-2|PLK5 48.345845343767074 0.13800640434549966 2 [YK]G{M(Oxidation (M))|F}GYQ{I|L} 8 0 + 50.896 0 0 5.2228 5.2228 84.68 0 0 0 3.679767852945943 37.79676584209078 3.679767852945943 4.7772015850085126 0 0.8494850021680094 0 0 0.3807196863200844 + + [YK]G{M(Oxidation (M))|F}GYQ{I|L};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}YQ{I|L};[YK]GG{M(Oxidation (M))|F}YQ{I|L};[YK]G{M(Oxidation (M))|F}GY[AG]{I|L};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}Y[AG]{I|L};[YK]GG{M(Oxidation (M))|F}Y[AG]{I|L};[YK]G{M(Oxidation (M))|F}G[{M(Oxidation (M))|F}E]K;{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]K;[YK]GG{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]K;{[QD]|[EN]|[WG]|[KD]|[RS]}[EP][{M(Oxidation (M))|F}V]Q{I|L} 5.2228;4.7326;4.3556;4.2724;3.7751;3.4051;2.7856;2.0139;1.9184;1.0737 +;-;-;-;-;-;-;-;-;- + 533 NaN NaN 151119.7 NaN 8407 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11269 53.587 NaN 319360 35 0 33857 0.261 + 29510 TYVSGTLRF 9 67 522.2797517710965 1042.5449506089928 2 522.2801513671875 MULTI HCD FTMS 0 0 0 11266 91546.078125 0.16405219677295685 11 -0.23470306396484375 3 Unmodified _TYVSGTLRF_ CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 61.60191391372663 0.015340508911304802 2 [YT]VSGT{I|L}R{M(Oxidation (M))|F} 9 0 + 74.729 0 0 7.168 7.168 88.535 0 0 0 15.019123430258958 15.019123430258958 15.019123430258958 6.352070185059333 0 1.805462187404089 2 0.8494850021680094 0 + + [YT]VSGT{I|L}R{M(Oxidation (M))|F};[YT]V[KT]ER{M(Oxidation (M))|F};[YT]V[KT]{[RE]|[WV]}{M(Oxidation (M))|F};[YT]V{[ET]|[MV]}KR{M(Oxidation (M))|F} 7.168;6.5587;5.7273;5.5775 +;-;-;- + 190 + NaN NaN 132401.6 NaN 8408 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11270 53.591 NaN 759910 35 0 63154 0.261 + 22758 QYIDKLNEL 9 95 568.3032457696595 1134.591938606119 2 568.788818359375 MULTI HCD FTMS 0 0 0 11266 77851.5703125 0.6797593604355262 -1 0.032878875732421875 4 Unmodified _QYIDKLNEL_ ENSG00000115355|ENST00000436346|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-5|CCDC88A 59.368380827593164 0.01846506874148156 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{[QN]|[E{I|L}]|[KN]} 9 5 + 65.252 0 0 5.7511 5.7511 83.594 0 0 0 6.09630757282244 0.07062321345803468 0.07062321345803468 0.07062321345803468 0 0 1.6989700043360187 1.2984550065040281 0.3807196863200844 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EE[R{I|L}];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]{I|L}DT{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}[{I|L}A]T{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[VS]{I|L}DT{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A]NTN{[QN]|[E{I|L}]|[KN]};[VP]Y[VS]{I|L}DT{[QN]|[E{I|L}]|[KN]};[VP]T[{M(Oxidation (M))|F}T]{I|L}DT{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[{I|L}A][KS]N{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[SG]DK{I|L}N{[QN]|[E{I|L}]|[KN]} 5.7511;5.7449;5.2138;4.6616;4.5978;3.9899;3.9119;3.7831;3.7015;3.588 -;-;-;-;-;-;-;-;-;- 2702 + NaN NaN 200954.2 NaN 8409 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11271 53.594 NaN 211370 35 0 29768 0.261 + 3267 EEALILDNKY 10 47 604.3137380838164 1206.6129232344326 2 604.3139038085938 MULTI HCD FTMS 0 0 0 11266 96378.2578125 0.8072599241976097 -5 0.11399078369140625 5 Unmodified _EEALILDNKY_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 69.33821966488729 0.018369488249132326 2 {I|L}N{I|L}{I|L}{I|L}A[HC] 8 7 52.938 0 0 4.3873 0 0 311.11189467597814 0 311.11189467597814 0 29.15282857807391 0 0 0 1.1307196863200843 0 0 0.3494850021680094 {I|L}N{I|L}{I|L}{I|L}A[HC] 4.3873 - 164 NaN NaN 120672.1 NaN 8410 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11272 53.597 NaN 110790 35 0 5790.8 0.261 + 2210 DIPYIISSF 9 51 527.7763991590145 NaN 0 527.7662353515625 PEAK HCD FTMS 0 0 0 11266 12892.619140625 1 0 0 6 Unmodified _DIPYIISSF_ LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|23|1|anti-sense 7.910154910731844 0.25691533546754686 2 AE 2 9 10.969 0 0 1.0412 0 0 131.118314009558 719.3180636041624 850.4363776137204 0 0 0 0 0 0 0 0 0 AE 1.0412 - 13 + NaN NaN 108066.2 NaN 8411 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11273 53.601 NaN 303280 35 0 71926 0.263 + 24556 RYLLKFEQI 9 56 403.9044690840802 1208.6915778524406 3 403.90423583984375 MULTI HCD FTMS 0 0 0 11266 58314.69921875 0.5406689947007165 -4 0.10444259643554688 7 Unmodified _RYLLKFEQI_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 12.872603262515298 0.2491399024913319 2 Q{I|L} 2 7 30.217 0 0 2.4999 0 0 949.5371539840382 0 949.5371539840382 0 17.028937514676485 0 0 0 0.5 0 0 0.4247425010840047 + Q{I|L} 2.4999 + + 23 NaN NaN 132153.9 NaN 8412 2859 11266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11275 53.605 NaN 655050 35 0 118840 0.327 + 8251 GSYMMECLTN 10 74 574.7252399315836 1147.435926929967 2 574.725341796875 MULTI HCD FTMS 0 0 0 11274 134833.46875 0.5416280421276898 4 -0.05794525146484375 1 Unmodified _GSYMMECLTN_ ENSG00000146085|ENST00000274813|MMUT 8.745405648335112 0.42901288225909884 2 {[WN]|[YH]}[HN]CSVS{[DS]|[MA]|[CV]|TT} 10 9 {[WN]|[YH]}[HN]C + + 22.435 17.898 2.7358 1.9552 1.9552 59.755 0 0 0 0 1.1225390609643782 0 0 0 0 0 0.7742275032520141 0 {[WN]|[YH]}[HN]CSVS{[DS]|[MA]|[CV]|TT} 1.9552 - 163 + NaN NaN 190195.6 NaN 8413 2860 11274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11276 53.61 NaN 494400 35 0 41589 0.261 + 6018 FPDRIMNTF 9 86 578.7762597744046 1155.537966615609 2 578.776611328125 MULTI HCD FTMS 0 0 0 11274 175250.40625 0.2998498401677872 12 -0.2641334533691406 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 84.5221896805406 0.004669506596793478 2 {M(Oxidation (M))|F}PD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RD]T{M(Oxidation (M))|F} 9 3 + 49.961 0 0 4.3236 4.3236 88.577 0 0 0 20.536590338942915 0.05967043556417195 0.05967043556417195 17.580240701170162 0 1.3494850021680094 0 1.1861818737241734 0.3054621874040891 {M(Oxidation (M))|F}PD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RD]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KQ]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QQNT{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[HT]NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GRS[KS]NT{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KP]QQ{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GRS[KS]GGT{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}DPE;[{M(Oxidation (M))|F}T]DR[QP][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PD[HV][TP]N{[ET]|[MV]} 4.3236;2.8022;2.8022;2.7584;2.5434;1.9754;1.7503;1.5959;1.524;1.4631 -;-;-;-;-;-;-;-;-;- 805 + NaN NaN 166187.7 NaN 8414 2860 11274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11277 53.613 NaN 219540 35 0 12893 0.261 + 15563 LPDQPPYHL 9 62 540.2796777783375 1078.5448026234749 2 540.280029296875 MULTI HCD FTMS 0 0 0 11274 26256.771484375 0.030503873446655044 22 -0.5227813720703125 3 Unmodified _LPDQPPYHL_ ENSG00000156587|ENST00000287156|UBE2L6 18.373094154950223 0.20161688160436167 2 {I|L}PDQ[PA]Q 7 4 35.577 0 0 3.2986 0 0 0 326.1339205377563 326.1339205377563 3.877589348308348 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 {I|L}PDQ[PA]Q 3.2986 - 265 + NaN NaN 123069.9 NaN 8415 2860 11274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11278 53.617 NaN 84128 35 0 11103 0.262 + 4016 ERRRAADSRAK 11 46 439.2482019866962 1314.7227765602886 3 439.5828857421875 MULTI HCD FTMS 0 0 0 11274 22112.21875 0.7286342766882528 -4 0.09817886352539062 4 Unmodified _ERRRAADSRAK_ REV__FAM69B|p.P133R|1|0.1|ENSG00000165716|chr9:136722216-136722216|C/G|missense_variant 3.5926746625661337 0.403164415885289 2 W 1 -1 1.5938 0 0 0.12123 0 0 707.4433098628261 418.17307459049067 1125.6163844533169 0 0 0 0 0 0 0 0 0 W 0.12123 - 5 + NaN NaN 106239.7 NaN 8416 2860 11274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11280 53.622 NaN 3760900 35 0 681600 0.327 + 29375 TYQDIQNTI 9 110 548.2694184151188 1094.5242838970375 2 548.2695922851562 MULTI HCD FTMS 0 0 0 11279 2264302.5 0.7035507633080801 5 -0.08418655395507812 1 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 163.68669969883206 7.261465303366562E-09 2 [YT]QD{I|L}QNT{I|L} 9 0 + 103.41 0 0 9.4475 9.4475 91.46 0 0 0 5.691154510433108 14.291746928241125 5.691154510433108 5.691154510433108 0 2.024227503252014 2 1.736346736360778 0.6237125054200234 + + [YT]QD{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT]QD{I|L}QGGT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}QN{I|L}T;{[QS]|[NT]}{I|L}EYQGGT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QGGT{I|L} 9.4475;8.9276;8.6062;8.6062;8.6062;8.1418;8.0863;8.0863;7.7689;7.7689 +;-;-;-;-;-;-;-;-;- + 14434 NaN NaN 613155.3 NaN 8417 2861 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11281 53.626 NaN 225820 35 0 41047 0.261 + 23849 RSATWFKRQFF 11 60 491.92946613612924 1472.7665690085878 3 491.9296569824219 MULTI HCD FTMS 0 0 0 11279 41206.265625 0.8790069345261408 -5 0.1143798828125 2 Unmodified _RSATWFKRQFF_ REV__ENSG00000157445|ENST00000474759|CACNA2D3;REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 3.5926746625661337 0.403164415885289 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.7633 0 0 1206.6407888345627 0 1206.6407888345627 0 11.286443222846065 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 1.7633 - 55 + NaN NaN 110276.6 NaN 8418 2861 11279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11283 53.631 NaN 712070 35 0 176130 0.327 + 1947 DAHPETIVL 9 59 497.76373170010976 993.5129104670195 2 497.7640380859375 MULTI HCD FTMS 0 0 0 11282 466239.0625 1 0 0 1 Unmodified _DAHPETIVL_ ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 26.88365393820708 0.12808753336095696 2 [Y{I|L}]VC[DG]{I|L}V 8 7 42.898 0 0 4.3178 0 0 0 128.07231097355398 128.07231097355398 28.293578219013824 0 0 0 0 0.5 1.6989700043360187 0.805462187404089 0 [Y{I|L}]VC[DG]{I|L}V 4.3178 - 87 NaN NaN 204144.5 NaN 8419 2862 11282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11284 53.635 NaN 205920 35 0 25736 0.261 + 32084 VYQVLQEHL 9 57 564.80591035772 1127.59726778224 2 565.2899169921875 MULTI HCD FTMS 0 0 0 11282 14778.4765625 0.63109370347542 -5 0.1110687255859375 2 Unmodified _VYQVLQEHL_ ENSG00000101144|ENST00000395863|BMP7 26.268140514670165 0.13340543277302316 2 [YV]QV{I|L} 5 4 34.297 0 0 3.0416 0 0 0 522.2289565852274 522.2289565852274 16.576447055154514 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 + [YV]QV{I|L} 3.0416 + + 256 NaN NaN 124710.6 NaN 8420 2862 11282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11285 53.639 NaN 181230 35 0 20905 0.261 + 8669 HFIAEHYMF 9 52 597.7736380194214 1193.5327231056426 2 597.7725830078125 MULTI HCD FTMS 0 0 0 11282 38523.46875 0.6679006994598284 2 -0.03218841552734375 3 Unmodified _HFIAEHYMF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 25.399314129420986 0.14091189997036632 2 H{M(Oxidation (M))|F}{I|L} 3 6 19.781 0 0 1.6574 0 0 0 793.2979830377561 793.2979830377561 3.812281309285627 0 0 0 0 0.5 0 0 0 + H{M(Oxidation (M))|F}{I|L} 1.6574 + + 47 + NaN NaN 117885.5 NaN 8421 2862 11282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11287 53.644 NaN 2625900 35 0 778900 0.327 + 7611 FYHKYFNYL 9 94 432.21330696383626 1293.6180914917088 3 432.2132263183594 MULTI HCD FTMS 0 0 0 11286 984945.8125 0.2069802220042798 13 -0.34714508056640625 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 39.94969957227396 0.06557568441294001 2 N{M(Oxidation (M))|F}Y{I|L} 4 6 47.524 0 0 3.6737 0 0 738.346483299025 0 738.346483299025 0 32.830918867322296 0 0 0 0.9247425010840047 0 0 1.3494850021680094 N{M(Oxidation (M))|F}Y{I|L} 3.6737 - 821 NaN NaN 483212.1 NaN 8422 2863 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11288 53.648 NaN 1439600 35 0 295760 0.261 + 28432 TPINEGQTVL 10 81 536.2877728198017 1070.5609927064033 2 536.2879028320312 MULTI HCD FTMS 0 0 0 11286 576022.75 0.9682807087879456 -1 0.0126495361328125 2 Unmodified _TPINEGQTVL_ ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 67.08073823543168 0.021044403604576784 2 {[TV]|[{I|L}S]}[QP]E{[QG]|[NA]}TV{I|L} 10 3 + 64.631 0 0 6.0371 6.0371 93.285 0 0 0 13.239087409443187 52.40778928100886 13.239087409443187 54.43795206351935 0 1.555462187404089 1.6989700043360187 1.2134679910804405 0.6307196863200843 {[TV]|[{I|L}S]}[QP]E{[QG]|[NA]}TV{I|L};{[TV]|[{I|L}S]}[QP]EAA{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 6.0371;0.95216 -;- 190 NaN NaN 306868.8 NaN 8423 2863 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11289 53.652 NaN 280690 35 0 28673 0.261 + 27155 SYNEHWNYL 9 67 613.2670666904297 1224.5195804476593 2 613.265869140625 MULTI HCD FTMS 0 0 0 11286 84792.28125 0.2548005292550519 -4 0.06462478637695312 3 Unmodified _SYNEHWNYL_ ENSG00000111321|ENST00000228918|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR 32.78568957990786 0.09846250359632436 2 NY{I|L} 3 6 36.114 0 0 2.9493 0 0 816.319139549025 0 816.319139549025 0 25.656753288559813 0 0 0 0.4247425010840047 0 0 0.805462187404089 + NY{I|L} 2.9493 + + 65 NaN NaN 128936.9 NaN 8424 2863 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11290 53.655 NaN 698680 35 0 106780 0.261 -1 LMAYMCWSL 9 105 567.2434862389623 1132.4724195447245 2 567.7457885742188 MULTI HCD FTMS 0 0 0 11286 17298.09375 0.4307903931171783 9 -0.22572708129882812 4 Oxidation (M) _LM(Oxidation (M))AYMCWSL_ ENSG00000137842|ENST00000260403|TMEM62 12.531546534597751 0.2520865569484384 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L} 8 -1 49.875 0 0 4.4041 0 0 0 141.921735300837 141.921735300837 23.655243229180414 0 0 0 0 0 2 0.7302046884880937 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L} 4.4041 - 2588 NaN NaN 195604 NaN 8425 2863 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11291 53.658 NaN 61234 35 0 4663.1 0.262 + 19577 NTALPLALR 9 47 484.79803330798796 967.581513682776 2 484.7979431152344 MULTI HCD FTMS 0 0 0 11286 5915.26025390625 0.2912495547515225 1 -0.01953887939453125 5 Unmodified _NTALPLALR_ ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF 8.745405648335112 0.2847203663274469 2 {[QS]|[NT]}A{I|L} 4 5 25.005 0 0 2.5843 0 0 0 565.3450411432249 565.3450411432249 17.557809497117844 0 0 0 0 0.8807196863200843 0 0 0 + {[QS]|[NT]}A{I|L} 2.5843 + + 14 + NaN NaN 92361.2 NaN 8426 2863 11286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11293 53.663 NaN 1285000 35 0 346440 0.327 + 24067 RYAAQLPAL 9 70 501.79020797692584 1001.5658630206517 2 501.790283203125 MULTI HCD FTMS 0 0 0 11292 588352.3125 0.9162482363439293 2 -0.04244232177734375 1 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 85.27202061508552 0.004649858145912257 2 [YR]AAQ{I|L}PA{I|L} 9 0 + 79.975 0 0 7.985 7.985 92.032 0 0 0 4.762036441594191 54.28842824069392 4.762036441594191 9.208187539523749 0 2.555462187404089 0 0 1.110924374808178 + + [YR]AAQ{I|L}PA{I|L};[YR]AA[AG]{I|L}PA{I|L};[{I|L}P][HN]Q{I|L}PA{I|L};[{I|L}P][HN][AG]{I|L}PA{I|L} 7.985;7.0656;6.9618;6.0425 +;-;-;- + 469 NaN NaN 291202.8 NaN 8427 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11294 53.668 NaN 396350 35 0 88051 0.261 -1 HFDMAVYL 8 57 506.2339798096897 1010.4534066861794 2 506.2337341308594 MULTI HCD FTMS 0 0 0 11292 142362.453125 0.6349444075018686 -3 0.041744232177734375 2 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 8.593279151180031 0.5292430274356741 2 VY{I|L} 3 -1 31.198 0 0 3.0875 0 0 617.2248402326187 0 617.2248402326187 0 14.208187539523749 0 0 0 0.5 0 0 0 VY{I|L} 3.0875 + + 35 NaN NaN 146178 NaN 8428 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11295 53.671 NaN 334640 35 0 44169 0.261 + 24813 RYPLLLQKI 9 77 572.3659663502481 1142.717379767296 2 572.3659057617188 MULTI HCD FTMS 0 0 0 11292 102879.0546875 0.5467770325493903 -7 0.14325714111328125 3 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 39.94969957227396 0.06557568441294001 2 [YR][{I|L}P]{I|L}{I|L}QK{I|L} 9 0 + 49.389 0 0 4.3221 4.3221 85.98 0 0 0 5.7037091163776665 22.14841568716295 5.7037091163776665 9.208187539523749 0 1.524227503252014 0 0 0.3054621874040891 + + [YR][{I|L}P]{I|L}{I|L}QK{I|L};[YR][{I|L}P]{I|L}{I|L}[AG]K{I|L} 4.3221;3.5163 +;- + 179 NaN NaN 148528.5 NaN 8429 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11296 53.675 NaN 369770 35 0 43903 0.261 + 15503 LPDMVVSHL 9 69 513.768193570899 NaN 0 513.7681884765625 PEAK HCD FTMS 0 0 0 11292 104131.46875 0.08496503492937325 50 -1.109100341796875 4 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 65.23502041540118 0.015547834519309937 2 PD{M(Oxidation (M))|F}VVS 6 3 39.729 0 0 3.8741 0 0 113.08531373741296 265.13117395572505 378.216487693138 0 0 0 0 0 1.579689690656103 0 0.4247425010840047 0 + PD{M(Oxidation (M))|F}VVS 3.8741 + + 147 + NaN NaN 166910.6 NaN 8430 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11297 53.678 NaN 351950 35 0 29690 0.261 + 2353 DPDGHEICF 9 71 516.7082141429077 1031.4018753526152 2 516.7084350585938 MULTI HCD FTMS 0 0 0 11292 100446.6171875 0.7651632715925949 3 -0.08198165893554688 5 Unmodified _DPDGHEICF_ ENSG00000167699|ENST00000301329|GLOD4;ENST00000576239.5_1_17:663415-673427:-|nuORF;nc|ENSG00000167699|Q9HC38|GLOD4 26.88365393820708 0.12808753336095696 2 DC{M(Oxidation (M))|F} 3 6 36.075 0 0 3.4977 0 0 648.2866078107437 0 648.2866078107437 0 30.590292461168204 0 0 0 1 0 0.28872548999643577 0 DC{M(Oxidation (M))|F} 3.4977 - 81 NaN NaN 141613.4 NaN 8431 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11298 53.681 NaN 114670 35 0 5272.9 0.261 + 5383 FGRPLGHNW 9 58 542.2780974455706 NaN 0 542.27685546875 PEAK HCD FTMS 0 0 0 11292 21508.560546875 0.5709861695699429 4 -0.0948638916015625 6 Unmodified _FGRPLGHNW_ REV__nc|ENSG00000197768|Q8N7X2-1|STPG3;REV__nc|ENSG00000197768|Q8N7X2-3|STPG3;REV__nc|ENSG00000197768|Q8N7X2|STPG3 7.289230182591677 0.2599242500475609 2 S 1 -1 8.9794 0 0 0.82947 0 0 131.0942065104785 861.3908447722259 992.4850512827045 0 0 0 0 0 0.3494850021680094 0 0 0 S 0.82947 - 9 + NaN NaN 106841.2 NaN 8432 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11299 53.685 NaN 83449 35 0 10782 0.262 + 25165 SAISEGTVL 9 45 438.73716884791145 875.4597847626229 2 438.7374572753906 MULTI HCD FTMS 0 0 0 11292 8420.8974609375 0.046839996292344706 -5 0.08416366577148438 7 Unmodified _SAISEGTVL_ ENSG00000167967|ENST00000301727|E4F1;ENST00000569796.1_1_16:2285204-2285570:+|nuORF 37.97399986684836 0.07464525285885698 2 SE{[SA]|[TG]}V{I|L} 6 3 28.733 0 0 3.2821 0 0 271.15559882687916 0 271.15559882687916 0 21.28607912182254 0 0 0 1.805462187404089 0 0 0 + SE{[SA]|[TG]}V{I|L} 3.2821 + + 30 + NaN NaN 99948.6 NaN 8433 2864 11292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11301 53.69 NaN 513730 35 0 39850 0.327 + 7605 FYHKYFNYL 9 73 647.8164504130114 1293.6183478928226 2 647.8163452148438 MULTI HCD FTMS 0 0 0 11300 175628.625 0.19112519952106782 15 -0.396270751953125 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 49.55428908609986 0.03219431099695407 2 [Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L} 9 2 + 54.875 0 0 4.242 4.242 81.386 0 0 0 3.1829554760228973 16.478174818886373 3.1829554760228973 0.26802492411967194 0 1.4247425010840047 0 0 0.805462187404089 [Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYN{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKYGG{M(Oxidation (M))|F}Y{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WKY{M(Oxidation (M))|F}GGY{I|L};[YN]{M(Oxidation (M))|F}[WK]N{M(Oxidation (M))|F}Y{I|L};[YN]{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}NY{I|L} 4.242;4.2213;3.9959;3.9752;3.5302;3.5095;3.2841;3.2634;3.1572;3.1365 -;+;-;-;-;-;-;-;-;- + 566 NaN NaN 166205.4 NaN 8434 2865 11300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11302 53.694 NaN 421380 35 0 32395 0.262 -1 KCHQCVETI 9 79 559.2602461130803 1116.5059392929604 2 559.2603149414062 MULTI HCD FTMS 0 0 0 11300 136258.90625 0.33716198530580177 7 -0.18004226684570312 2 Carbamidomethyl (C) _KCHQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 32.78568957990786 0.09846250359632436 2 [YT]QD{I|L}QM 7 -1 72.687 0 0 6.5102 0 0 0 234.09617029361564 234.09617029361564 38.653113369619305 0 0 0 0 1.9124379954164592 2 0.7059771852360797 0.3807196863200844 [YT]QD{I|L}QM 6.5102 - 815 + NaN NaN 158473.9 NaN 8435 2865 11300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11303 53.698 NaN 279470 35 0 60655 0.264 + 24557 RYLLKFEQI 9 59 403.9044690840802 1208.6915778524406 3 404.2393798828125 MULTI HCD FTMS 0 0 0 11300 46045.58984375 0.5299989676691607 3 -0.06871795654296875 3 Unmodified _RYLLKFEQI_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 12.872603262515298 0.2491399024913319 2 Q{I|L} 2 7 30.217 0 0 2.4999 0 0 949.5370031484823 0 949.5370031484823 0 14.018637558036673 0 0 0 0.5 0 0 0.4247425010840047 + Q{I|L} 2.4999 + + 24 NaN NaN 128809.1 NaN 8436 2865 11300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11304 53.701 NaN 93580 35 0 3601.1 0.261 + 410 AKKEGKVLFNN 11 38 624.3585264877524 NaN 0 624.2577514648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _AKKEGKVLFNN_ ENSG00000150540|ENST00000280097|HNMT 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115964.3 NaN 8437 2865 11300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11306 53.706 NaN 571050 35 0 65946 0.327 + 27156 SYNEHWNYL 9 77 613.2670666904297 1224.5195804476593 2 613.2674560546875 MULTI HCD FTMS 0 0 0 11305 276719.9375 0.831542511782874 -1 0.01629638671875 1 Unmodified _SYNEHWNYL_ ENSG00000111321|ENST00000228918|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR 66.45667989310934 0.010234776021261575 2 TWNY{I|L} 5 5 50.904 0 0 4.1571 0 0 529.1940785138687 0 529.1940785138687 0 40.446537861557985 0 0 0 0.7742275032520141 0 0.5994850021680094 0.8494850021680094 TWNY{I|L} 4.1571 - 281 NaN NaN 173996.1 NaN 8438 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11307 53.71 NaN 338440 35 0 74475 0.261 + 11427 IYPVKYTQTF 10 49 630.3372029870114 1258.6598530408228 2 630.3374633789062 MULTI HCD FTMS 0 0 0 11305 123623.453125 0.35588702622621526 6 -0.16374588012695312 2 Unmodified _IYPVKYTQTF_ ENSG00000112378|ENST00000421351|PERP 53.31671820480216 0.06572736166898346 2 [Y{I|L}]PVKYTQ[{M(Oxidation (M))|F}T] 10 0 + 68.152 0 0 5.4147 5.4147 86.806 0 0 0 2.984550065040281 2.984550065040281 2.984550065040281 9.164539485499255 0 2.6549471895720984 1.6989700043360187 0.75 0 + + [Y{I|L}]PVKYTQ[{M(Oxidation (M))|F}T];[Y{I|L}]PVKYT[AG][{M(Oxidation (M))|F}T];[Y{I|L}]PVKY[NS][Y{I|L}] 5.4147;4.6865;3.3672 +;-;- + 74 + NaN NaN 134436.1 NaN 8439 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11308 53.714 NaN 435010 35 0 37693 0.264 + 18255 MPDVDLHL 8 68 478.23150982867156 954.4484667241431 2 478.2315673828125 MULTI HCD FTMS 0 0 0 11305 188173.984375 0.30545995366739587 -31 0.610748291015625 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 2 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 61.904 0 0 6.4858 6.4858 85.999 0 0 0 2.998037644757048 2.998037644757048 2.998037644757048 2.998037644757048 0 2.1549471895720984 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 6.4858;6.1717 +;+ + 208 + NaN NaN 154118.3 NaN 8440 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11309 53.717 NaN 343990 35 0 23108 0.261 + 1091 AYIERMNYI 9 82 586.7916656950093 1171.5687784568186 2 586.7919921875 MULTI HCD FTMS 0 0 0 11305 109051.40625 0.3021014636097352 8 -0.21952056884765625 4 Unmodified _AYIERMNYI_ ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-2|FYN;nc|ENSG00000010810|P06241-3|FYN 57.72198328787511 0.020768266150574023 2 [Y{I|L}]AERMNY{I|L} 9 2 + 71.308 0 0 6.0865 6.0865 84.119 0 0 0 0.0945964327661386 16.478174818886373 0.0945964327661386 0.0945964327661386 0 1.6435078169319297 2 0 0.7302046884880937 [Y{I|L}]AERMNY{I|L};{I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAEMRNY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERMNY{I|L};{I|L}YAEM[YN]R{I|L};[Y{I|L}]AERMGGY{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ERMGGY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAAA{[YC]|[HE]}ER{I|L} 6.0865;6.0784;5.6756;5.6587;5.3315;5.3005;5.2925;4.8727;4.33;4.2886 -;-;-;+;-;-;-;-;-;- + 871 NaN NaN 138103.1 NaN 8441 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11310 53.721 NaN 637360 35 0 37958 0.261 + 20131 NYIRITSEI 9 82 554.8032720390048 1107.5919911448095 2 554.8037109375 MULTI HCD FTMS 0 0 0 11305 156473.140625 0.75520988951802 -2 0.04244232177734375 5 Unmodified _NYIRITSEI_ ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 93.16586880292088 0.00444300900000894 2 [YN]{I|L}R{I|L}TSE{I|L} 9 0 + 82.176 0 0 7.4193 7.4193 95.488 0 0 0 11.914543788274798 11.914543788274798 11.914543788274798 46.16750554106318 0 2.1791746928241125 1.6989700043360187 0 0.9291746928241126 + + [YN]{I|L}R{I|L}TSE{I|L};[YN]{I|L}[VG][KS]SQ{I|L};[VP][HD]{I|L}[KA]SE{I|L};{[QN]|[E{I|L}]|[KN]}[YR][KA]SE{I|L} 7.4193;3.2511;1.9814;1.8893 +;-;-;- + 885 NaN NaN 179749.6 NaN 8442 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11311 53.724 NaN 169860 35 0 46995 0.261 + 5402 FGVMTKSWKG 10 51 570.7978336904256 1139.581114447651 2 570.7977294921875 MULTI HCD FTMS 0 0 0 11305 131388.890625 0.791311270617629 5 -0.14090728759765625 6 Unmodified _FGVMTKSWKG_ REV__ENSG00000167699|ENST00000301329|GLOD4;REV__ENST00000576239.5_1_17:674543-685513:-|nuORF;REV__nc|ENSG00000167699|Q9HC38-3|GLOD4;REV__nc|ENSG00000167699|Q9HC38|GLOD4 2.9952420565917617 0.4594494122822477 2 P[RH]VQ[RP]W 8 -1 20.635 0 0 1.8107 0 0 65.02360617485495 0 65.02360617485495 0 10.17728766960431 0 0 0 0 0 0 0 P[RH]VQ[RP]W 1.8107 - 55 + NaN NaN 110671.8 NaN 8443 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11312 53.727 NaN 361630 35 0 138290 0.264 -1 QVDFGGRLMKV 11 51 422.5609436494194 1264.6610015484582 3 422.56097412109375 MULTI HCD FTMS 0 0 0 11305 87551.5 0.7119015572071555 -2 0.04244232177734375 7 Oxidation (M) _QVDFGGRLM(Oxidation (M))KV_ ENSG00000154928|ENST00000398015|EPHB1;EPHB1|p.T584Kfs*8|1|0.08|ENSG00000154928|chr3:135166998-135166998|C/-|frameshift_variant 5.523293073838413 0.3946973793746473 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2244 0 0 1099.5821726683785 0 1099.5821726683785 0 0.8753718491936269 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2244 + + 23 + NaN NaN 137752.2 NaN 8444 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11313 53.731 NaN 237300 35 0 38613 0.261 + 4538 EYLGKLVRF 9 63 562.826716575445 1123.6388802176898 2 562.827392578125 MULTI HCD FTMS 0 0 0 11305 81144.9296875 0.5114035564541652 5 -0.14090728759765625 8 Unmodified _EYLGKLVRF_ ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF 39.94969957227396 0.06557568441294001 2 EY{I|L}GK{I|L}VR{M(Oxidation (M))|F} 9 0 + 66.916 0 0 5.9553 5.9553 93.481 0 0 0 49.44160714254835 9.889917747712644 9.889917747712644 66.91585725094882 0 0.7742275032520141 2 0 0 + + EY{I|L}GK{I|L}VR{M(Oxidation (M))|F} 5.9553 + + 74 + NaN NaN 142987 NaN 8445 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11314 53.734 NaN 158140 35 0 12875 0.261 + -1 FPETCYMYL 9 54 620.257622292004 1238.500691650808 2 620.7598266601562 MULTI HCD FTMS 0 0 0 11305 21490.625 0.32928908368620863 -3 0.061981201171875 9 Carbamidomethyl (C),Oxidation (M) _FPETC(Carbamidomethyl (C))YM(Oxidation (M))YL_ REV__ENSG00000105726|ENST00000357324|ATP13A1;REV__ENST00000473243.5_1_19:19764878-19766320:-|nuORF;REV__ENST00000496082.5_1_19:19764878-19766379:-|nuORF;REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1 7.289230182591677 0.29575926068275815 2 Y{I|L} 2 -1 24.464 0 0 1.9753 0 0 944.3401467368793 0 944.3401467368793 0 13.979400086720375 0 0 0 0.5 0 0 0 Y{I|L} 1.9753 + + 14 NaN NaN 116605.7 NaN 8446 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11315 53.737 NaN 189070 35 0 16684 0.261 -1 YPESESIMM 9 51 551.7250679951753 1101.4355830571506 2 552.2251586914062 MULTI HCD FTMS 0 0 0 11305 38721.94921875 0.9468239698600169 -4 0.0746307373046875 10 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 21.74664581756881 0.17247014374749275 2 {I|L}{[C(Carbamidomethyl (C))E]|[WC]}{M(Oxidation (M))|F}M 5 -1 26.95 0 0 2.4468 0 0 403.18528945136876 0 403.18528945136876 0 17.346368802282015 0 0 0 0.5 0 0.4247425010840047 0 {I|L}{[C(Carbamidomethyl (C))E]|[WC]}{M(Oxidation (M))|F}M 2.4468 - 25 NaN NaN 120560.4 NaN 8447 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11316 53.74 NaN 115830 35 0 9840.3 0.261 -1 0 39 637.4685445969864 NaN 0 637.7587890625 PEAK HCD FTMS 0 0 0 11305 7233.5751953125 0.8326249955177386 -1 0.01629638671875 11 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.43086 0 0 654.6193879226852 468.24534021549067 1122.864728138176 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.43086 - 2 + NaN NaN 104644.6 NaN 8448 2866 11305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11318 53.745 NaN 1567800 35 0 234490 0.327 + 22759 QYIDKLNEL 9 103 568.3032457696595 1134.591938606119 2 568.287109375 MULTI HCD FTMS 0 0 0 11317 40473.703125 0.21124422217856498 6 -0.14706802368164062 1 Unmodified _QYIDKLNEL_ ENSG00000115355|ENST00000436346|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-5|CCDC88A 20.41453444215458 0.18397929046831515 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E 9 6 + 82.713 0 0 7.2901 7.2901 93.921 0 0 0 22.42992819099939 5.241049764686139 5.241049764686139 22.42992819099939 0 0 2 1.8098943791441968 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EE[R{I|L}];[VP]{M(Oxidation (M))|F}H[HT]R{I|L}E;{[QN]|[E{I|L}]|[KN]}R{M(Oxidation (M))|F}{I|L}DT{I|L}E;{[RE]|[WV]}{I|L}{M(Oxidation (M))|F}{I|L}DT{I|L}E;[VP]{M(Oxidation (M))|F}H[RH]T{I|L}E;[YV]VD{I|L}EE[R{I|L}];{[QN]|[E{I|L}]|[KN]}[VG]{M(Oxidation (M))|F}{I|L}DT{I|L}E;[VP]TT{M(Oxidation (M))|F}[KG][SG]{I|L}E;[VP]TT{M(Oxidation (M))|F}{I|L}[KG][SG]E 7.2901;5.3132;3.7145;3.6796;3.5834;3.4065;3.3716;2.868;2.7594;2.0608 -;-;-;-;-;-;-;-;-;- 7180 NaN NaN 327065.6 NaN 8449 2867 11317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11319 53.75 NaN 97598 35 0 10105 0.261 + 3268 EEALILDNKY 10 39 604.3137380838164 1206.6129232344326 2 604.3135375976562 MULTI HCD FTMS 0 0 0 11317 38536.859375 0.3227829894829418 3 -0.0685577392578125 2 Unmodified _EEALILDNKY_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 34.93206674587334 0.18938571726943593 2 [HC]A{I|L}{I|L}N{I|L} 7 6 41.598 0 0 3.4475 0 0 0 439.184757593019 439.184757593019 19.6087259199831 0 0 0 0 0.6861818737241735 0 0 0 [HC]A{I|L}{I|L}N{I|L} 3.4475 - 82 NaN NaN 89542.6 NaN 8450 2867 11317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11320 53.753 NaN 187550 35 0 11641 0.261 + -1 FYKESMETI 9 58 582.2684164882161 1162.522280043232 2 582.7695922851562 MULTI HCD FTMS 0 0 0 11317 44924.890625 0.30940383551065476 18 -0.46435546875 3 Oxidation (M) _FYKESM(Oxidation (M))ETI_ REV__CON__Q6KB66-1;REV__ENSG00000167767|ENST00000394815|KRT80;REV__ENST00000313234.9_1_12:52565184-52565452:-|nuORF;REV__ENST00000466011.1_1_12:52565184-52579482:-|nuORF;REV__nc|ENSG00000167767|Q6KB66-3|KRT80 6.723162845929126 0.3000504726104499 2 WS{[C(Carbamidomethyl (C))G]|[NC]} 4 -1 12.307 0 0 1.0587 0 0 654.3118040896984 0 654.3118040896984 0 6.822581265925436 0 0 0 0 0 0 0 WS{[C(Carbamidomethyl (C))G]|[NC]} 1.0587 - 57 NaN NaN 120029.5 NaN 8451 2867 11317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11322 53.758 NaN 1644100 35 0 310540 0.326 + 29376 TYQDIQNTI 9 87 548.2694184151188 1094.5242838970375 2 548.2697143554688 MULTI HCD FTMS 0 0 0 11321 753139.8125 0.23401117561018428 12 -0.32755279541015625 1 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 132.13456570155267 0.00047552052208015726 2 [YT]QD{I|L}QNT{I|L} 9 0 + 96.851 0 0 8.8487 8.8487 93.188 0 0 0 2.9736380515341665 2.9736380515341665 2.9736380515341665 9.208187539523749 0 2.3737125054200234 2 1.2302046884880937 0 + + [YT]QD{I|L}QNT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT]QD{I|L}QGGT{I|L};[YT][AG]D{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][AG]D{I|L}QGGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};[YT]{NN|[MP]|[D{I|L}]|[EV]}QQNT{I|L};{[QS]|[NT]}{I|L}EYQGGT{I|L} 8.8487;8.0074;8.0074;8.0074;7.66;7.1701;7.1701;7.1701;7.008;6.8187 +;-;-;-;-;-;-;-;-;- + 2513 NaN NaN 347786.1 NaN 8452 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11323 53.763 NaN 306370 35 0 65315 0.261 + 33975 YLTRDDVL 8 43 497.76373170010976 993.5129104670195 2 497.763916015625 MULTI HCD FTMS 0 0 0 11321 145123.21875 0.3112635350024967 6 -0.1670989990234375 2 Unmodified _YLTRDDVL_ ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE 12.531546534597751 0.5015908124873912 2 V{I|L} 2 6 25.969 0 0 2.6139 0 0 763.3494789392628 0 763.3494789392628 0 5.678644001908566 0 0 0 0.5 0 0 0 + V{I|L} 2.6139 + + 15 NaN NaN 135138.9 NaN 8453 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11324 53.766 NaN 393500 35 0 143240 0.261 + 20854 PIEMIYFPFF 10 45 435.21882471573315 1302.6346447473995 3 435.2190246582031 MULTI HCD FTMS 0 0 0 11321 135619.75 0.9376094009999537 1 -0.03279876708984375 3 Unmodified _PIEMIYFPFF_ tr|U7T2L1|U7T2L1_FUSNUChromosomalreplicationinitiatorDnaAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00745PE=4SV=1 6.1918466704503565 0.44252927588099017 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 8 30.217 0 0 2.3196 0 0 990.4865891291525 0 990.4865891291525 0 16.721675119240516 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3196 + + 12 NaN NaN 149030.3 NaN 8454 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11325 53.77 NaN 334040 35 0 50055 0.261 + 14144 LAEGLRTVL 9 55 486.29785498103104 970.5811570288621 2 486.298095703125 MULTI HCD FTMS 0 0 0 11321 115479.4765625 0.4732275719930622 -3 0.06871795654296875 4 Unmodified _LAEGLRTVL_ ENSG00000111331|ENST00000228928|OAS3 49.52724829834842 0.03223213920720493 2 [{I|L}A]EG[R{I|L}]S{I|L}{I|L} 9 2 + 68.567 0 0 7.0645 7.0645 65.753 0 0 0 8.313018396694574 49.98319373273603 8.313018396694574 0 0 1.6989700043360187 1.6989700043360187 0.3494850021680094 0 [{I|L}A]EG[R{I|L}]S{I|L}{I|L};[{I|L}A]EG[R{I|L}]TV{I|L};{[TV]|[{I|L}S]}[RV][PS]TV{I|L};{[TV]|[{I|L}S]}[RV][PS]S{I|L}{I|L} 7.0645;7.0645;2.1732;2.1732 -;+;-;- + 64 NaN NaN 134967.8 NaN 8455 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11326 53.773 NaN 559860 35 0 158140 0.261 + -1 NTTRCFAKGC 10 79 579.2630011394186 1156.5114493456372 2 579.2628784179688 MULTI HCD FTMS 0 0 0 11321 91683.65625 0.684885925179262 -1 0.012882232666015625 5 Carbamidomethyl (C) _NTTRCFAKGC(Carbamidomethyl (C))_ REV__ENSG00000197714|ENST00000360338|ZNF460;REV__nc|ENSG00000197714|Q14592-2|ZNF460 7.101721422024254 0.4377131641736035 2 {[QS]|[NT]}TRR{M(Oxidation (M))|F}NT 8 -1 26.297 0 0 2.2738 0 0 0 163.0361493396346 163.0361493396346 13.143265708843044 0 0 0 0 0 0 0.2302046884880938 0.3807196863200844 {[QS]|[NT]}TRR{M(Oxidation (M))|F}NT 2.2738 - 853 NaN NaN 165182 NaN 8456 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11327 53.776 NaN 352230 35 0 40265 0.261 + 8252 GSYMMECLTN 10 60 574.7252399315836 1147.435926929967 2 574.724853515625 MULTI HCD FTMS 0 0 0 11321 73542.609375 0.2954217517209927 12 -0.32755279541015625 6 Unmodified _GSYMMECLTN_ ENSG00000146085|ENST00000274813|MMUT 3.5964929083625545 0.45626689593999237 2 S{[DS]|[MA]|[CV]|TT} 3 8 13.244 0 0 1.1542 0 0 840.3193630645359 0 840.3193630645359 0 6.650378042405906 0 0 0 0 0 0.7302046884880937 0 S{[DS]|[MA]|[CV]|TT} 1.1542 - 24 + NaN NaN 163605.2 NaN 8457 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11328 53.78 NaN 406060 35 0 42710 0.261 + -1 LPDMQQRQ 8 79 516.2512023604917 1030.4878517877833 2 516.2500610351562 MULTI HCD FTMS 0 0 0 11321 90454.9453125 0.9590053745628322 -4 0.0948638916015625 7 Oxidation (M) _LPDM(Oxidation (M))QQRQ_ REV__ENST00000543264.6_1_19:4282969-4288256:+|nuORF;REV__ENST00000599689.1_1_19:4282969-4290466:+|nuORF 15.847184025352803 0.47719562709667024 2 {I|L}PD 3 -1 35.45 0 0 3.4401 0 0 0 702.2966755035067 702.2966755035067 17.49114457050446 0 0 0 0 0.8494850021680094 1.154901959985743 0 0 {I|L}PD 3.4401 + + 118 + NaN NaN 147062.5 NaN 8458 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11329 53.783 NaN 605130 35 0 72627 0.261 + 880 AYAIIKEEL 9 61 525.2974650483845 1048.580377163569 2 525.2977294921875 MULTI HCD FTMS 0 0 0 11321 110641.84375 0.03990594406155599 -6 0.12705230712890625 8 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 85.64151623876279 0.004640175941193596 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 9 0 + 86.454 0 0 8.2449 8.2449 90.418 0 0 0 25.642492736872597 51.17066422680862 25.642492736872597 6.4967468446879195 0 2.138210492164445 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}VASE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}V{[SA]|[TG]}E{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}A{I|L}S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[SG]{I|L}{I|L}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};{[QN]|[E{I|L}]|[KN]}[SG]{I|L}{I|L}A{I|L}S{M(Oxidation (M))|F} 8.2449;7.6253;7.1014;6.2732;2.2231;1.9998;0.99401;0.77073 +;-;-;-;-;-;-;- + 517 NaN NaN 184488.3 NaN 8459 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11330 53.786 NaN 220040 35 0 39464 0.261 + 13369 KYMYFTVVM 9 42 607.2852810952146 1212.556009257229 2 607.2861328125 MULTI HCD FTMS 0 0 0 11321 75173.84375 0.46628872198173427 -4 0.0948638916015625 9 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 45.69961567697781 0.039180348357221985 2 Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 6 3 60.851 0 0 5.0184 0 0 438.19420058418126 0 438.19420058418126 0 53.86168767277148 0 0 0 1.9247425010840047 0 0.8494850021680094 0 + Y{M(Oxidation (M))|F}TVV{M(Oxidation (M))|F} 5.0184 + + 47 NaN NaN 117276.7 NaN 8460 2868 11321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11332 53.791 NaN 1613600 35 0 491280 0.327 + 7612 FYHKYFNYL 9 70 432.21330696383626 1293.6180914917088 3 432.2129821777344 MULTI HCD FTMS 0 0 0 11331 585807.75 0.12310384653452967 19 -0.5038871765136719 1 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 36.12702656103203 0.08312389501731911 2 Y{I|L} 2 7 29.776 0 0 2.3018 0 0 999.4610551622251 0 999.4610551622251 0 16.281446971601312 0 0 0 0.8807196863200843 0 0 0 + Y{I|L} 2.3018 + + 60 NaN NaN 335502.3 NaN 8461 2869 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11333 53.795 NaN 1190700 35 0 98071 0.261 + 28433 TPINEGQTVL 10 93 536.2877728198017 1070.5609927064033 2 536.2884521484375 MULTI HCD FTMS 0 0 0 11331 202801.578125 0.34090468789676953 5 -0.13430023193359375 2 Unmodified _TPINEGQTVL_ ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 34.221707139014875 0.19555013683537745 2 TV{I|L} 3 7 27.695 0 0 2.5869 0 0 739.3503003231084 0 739.3503003231084 0 1.7770340806903562 0 0 0 0.7302046884880937 0 0.8252574989159953 0 + TV{I|L} 2.5869 + + 260 NaN NaN 277369.3 NaN 8462 2869 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11334 53.799 NaN 268720 35 0 76540 0.261 + 30828 VPYEKGFAL 9 60 512.2790592969036 1022.5435656606072 2 512.2792358398438 MULTI HCD FTMS 0 0 0 11331 104850.296875 0.9547096114048095 -2 0.045680999755859375 3 Unmodified _VPYEKGFAL_ ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H 31.26834338654808 0.10542797264966089 2 VPYE 4 5 52.652 0 0 5.1491 0 0 0 531.2951143854124 531.2951143854124 34.23516269895728 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 + VPYE 5.1491 + + 77 + NaN NaN 121202.7 NaN 8463 2869 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11335 53.802 NaN 209450 35 0 21851 0.261 + 30835 VQDLHGPVL 9 51 489.2745620900645 976.534571246929 2 489.27447509765625 MULTI HCD FTMS 0 0 0 11331 57049.8203125 0.7416496108927286 -2 0.045680999755859375 4 Unmodified _VQDLHGPVL_ REV__ENSG00000167548|ENST00000301067|KMT2D;REV__KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D 17.11289562659939 0.2125047172822487 2 PV{I|L} 3 -1 35.445 0 0 3.6297 0 0 649.3172949797956 0 649.3172949797956 0 30.84121882396211 0 0 0 0.9247425010840047 0 0 0 PV{I|L} 3.6297 + + 90 NaN NaN 128026.3 NaN 8464 2869 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11336 53.806 NaN 103240 35 0 13005 0.261 + 24640 RYLQLQLYL 9 55 403.9044690840802 1208.6915778524406 3 403.9042663574219 MULTI HCD FTMS 0 0 0 11331 33939.90234375 0.31467628447504065 6 -0.17046356201171875 5 Unmodified _RYLQLQLYL_ ENST00000551124.5_1_12:56418779-56429112:+|nuORF;nc|ENSG00000123411|Q9H2S9-2|IKZF4 4.5288652416199255 0.31668488241058723 2 {I|L} 1 8 21.237 0 0 1.757 0 0 1077.5968340553686 0 1077.5968340553686 0 7.742275032520141 0 0 0 0.4247425010840047 0 0 0 + {I|L} 1.757 + + 21 + NaN NaN 102562.9 NaN 8465 2869 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11337 53.809 NaN 176140 35 0 13022 0.261 + -1 FYKESMETI 9 61 582.2684164882161 1162.522280043232 2 582.7706298828125 MULTI HCD FTMS 0 0 0 11331 32691.306640625 0.2251494777560032 20 -0.5333671569824219 6 Oxidation (M) _FYKESM(Oxidation (M))ETI_ REV__CON__Q6KB66-1;REV__ENSG00000167767|ENST00000394815|KRT80;REV__ENST00000313234.9_1_12:52565184-52565452:-|nuORF;REV__ENST00000466011.1_1_12:52565184-52579482:-|nuORF;REV__nc|ENSG00000167767|Q6KB66-3|KRT80 4.3292370932331545 0.3181982124262546 2 TS{[C(Carbamidomethyl (C))G]|[NC]} 4 -1 16.198 0 0 1.3933 0 0 739.3666489243255 0 739.3666489243255 0 9.420080530223132 0 0 0 0 0 0 0 TS{[C(Carbamidomethyl (C))G]|[NC]} 1.3933 - 56 NaN NaN 114559.8 NaN 8466 2869 11331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11339 53.814 NaN 540220 35 0 136620 0.327 + 24068 RYAAQLPAL 9 61 501.79020797692584 1001.5658630206517 2 501.790283203125 MULTI HCD FTMS 0 0 0 11338 200854.71875 0.3127935046843951 8 -0.22620391845703125 1 Unmodified _RYAAQLPAL_ ENSG00000141456|ENST00000572293|PELP1 37.97399986684836 0.07464525285885698 2 MAQ{I|L}PA{I|L} 7 3 54.487 0 0 5.4402 0 0 259.1527577130875 0 259.1527577130875 0 39.00260426274315 0 0 0 1.25 0 0 0.3807196863200844 MAQ{I|L}PA{I|L} 5.4402 - 235 NaN NaN 166301.5 NaN 8467 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11340 53.818 NaN 1147300 35 0 98502 0.261 + 9076 HPFFGRVVL 9 91 536.30822575557 1070.60189857794 2 536.308349609375 MULTI HCD FTMS 0 0 0 11338 274061.46875 1 0 0 2 Unmodified _HPFFGRVVL_ ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 25.399314129420986 0.14091189997036632 2 HP{M(Oxidation (M))|F}{I|L} 4 5 32.167 0 0 3.0046 0 0 0 573.3151929730548 573.3151929730548 14.107281392838829 0 0 0 0 0.5 0 0 0 HP{M(Oxidation (M))|F}{I|L} 3.0046 - 211 + NaN NaN 268246.4 NaN 8468 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11341 53.822 NaN 436420 35 0 109530 0.261 -1 HFDMAVYL 8 50 506.2339798096897 1010.4534066861794 2 506.23382568359375 MULTI HCD FTMS 0 0 0 11338 156228.015625 0.6967855824253752 3 -0.07851028442382812 3 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 8.593279151180031 0.5292430274356741 2 VY{I|L} 3 -1 28.812 0 0 2.8514 0 0 617.2245350568375 0 617.2245350568375 0 11.822581265925436 0 0 0 0.5 0 0 0 VY{I|L} 2.8514 + + 20 NaN NaN 167162.9 NaN 8469 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11342 53.825 NaN 634000 35 0 150720 0.261 -1 NIVCHLQN 8 70 499.2482031078263 996.4818532824527 2 499.2586364746094 MULTI HCD FTMS 0 0 0 11338 19360.8515625 0.3791151335181289 -4 0.10809707641601562 4 Carbamidomethyl (C) _NIVC(Carbamidomethyl (C))HLQN_ nc|ENSG00000292366|P51809-2|VAMP7 24.67388899826682 0.4122521268485776 2 YPWT 4 -1 55.015 0 0 5.5209 0 0 0 446.2157381647094 446.2157381647094 20.334529848931297 0 0 0 0 0.9436726795685342 1.6989700043360187 0.3807196863200844 0 YPWT 5.5209 - 260 + NaN NaN 186959.9 NaN 8470 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11343 53.829 NaN 349740 35 0 64815 0.261 + 24814 RYPLLLQKI 9 68 572.3659663502481 1142.717379767296 2 572.365966796875 MULTI HCD FTMS 0 0 0 11338 156711.171875 0.8328815791068985 -1 0.022876739501953125 5 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 56.17704186161178 0.022929533404884107 2 [YR][{I|L}P]{I|L}{I|L}QK{I|L} 9 0 + 66.59 0 0 5.8274 5.8274 88.286 0 0 0 19.141974908773918 49.6669877129645 19.141974908773918 9.208187539523749 0 1.6747425010840047 1.3979400086720375 0 0 + + [YR][{I|L}P]{I|L}{I|L}QK{I|L};[YR][{I|L}P]{I|L}{I|L}[AG]K{I|L} 5.8274;5.0216 +;- + 183 NaN NaN 139882.8 NaN 8471 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11344 53.832 NaN 493900 35 0 32791 0.261 + 3086 EAIKQIEVL 9 87 521.8108048189791 1041.6070567047582 2 521.8109741210938 MULTI HCD FTMS 0 0 0 11338 139565.875 0.8630679895031362 -1 0.022876739501953125 6 Unmodified _EAIKQIEVL_ ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 53.40400417844725 0.026808823219830042 2 EV{I|L} 3 6 40.93 0 0 3.9295 0 0 682.4022083966812 0 682.4022083966812 0 26.087717135756563 0 0 0 0.9247425010840047 0 0.8494850021680094 0 + EV{I|L} 3.9295 + + 158 NaN NaN 179245.4 NaN 8472 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11345 53.835 NaN 144030 35 0 11439 0.261 -1 HEMDCQKYI 9 51 620.257622292004 1238.500691650808 2 620.7587890625 MULTI HCD FTMS 0 0 0 11338 27061.201171875 0.4146439732364635 1 -0.032810211181640625 7 Carbamidomethyl (C),Oxidation (M) _HEM(Oxidation (M))DC(Carbamidomethyl (C))QKYI_ RELN|p.Y2995C|1|0.18|ENSG00000189056|chr7:103496735-103496735|T/C|missense_variant 6.723162845929126 0.3000504726104499 2 Y{I|L} 2 -1 24.464 0 0 1.9753 0 0 944.3422718732437 0 944.3422718732437 0 17.47425010840047 0 0 0 0.5 0 0 0 Y{I|L} 1.9753 + + 4 NaN NaN 113124.3 NaN 8473 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11346 53.839 NaN 274140 35 0 30113 0.261 -1 0 54 618.1082149274303 3085.504692304151 5 618.3251342773438 MULTI HCD FTMS 0 0 0 11338 17854.95703125 0.22582414341227244 4 -0.11142349243164062 8 NaN NaN 2 AEYS 4 -1 23.003 0 0 0.74552 0 0 1981.9657519572768 650.3155227269677 2632.2812746842446 0 0 0 0 0 0 0 0.805462187404089 0 AEYS 0.74552 - 43 + NaN NaN 141603.3 NaN 8474 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11347 53.842 NaN 88599 35 0 8787.1 0.261 + -1 MLPTMGQESMT 11 38 629.2620792242616 1256.509605515323 2 629.2625732421875 MULTI HCD FTMS 0 0 0 11338 28900.783203125 0.5302086930685534 3 -0.07851028442382812 9 2 Oxidation (M) _M(Oxidation (M))LPTM(Oxidation (M))GQESMT_ REV__ENSG00000151136|ENST00000280758|ABTB3;REV__nc|ENSG00000151136|A6QL63-2|ABTB3;REV__nc|ENSG00000151136|A6QL63-3|ABTB3;REV__nc|ENSG00000151136|A6QL63-5|ABTB3 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101763.6 NaN 8475 2870 11338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11349 53.847 NaN 565050 35 0 50821 0.327 + 27157 SYNEHWNYL 9 78 613.2670666904297 1224.5195804476593 2 613.2672729492188 MULTI HCD FTMS 0 0 0 11348 239417.515625 0.7194488554249112 4 -0.114776611328125 1 Unmodified _SYNEHWNYL_ ENSG00000111321|ENST00000228918|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR 55.50274090549119 0.023872834264864425 2 [YN][HD]TWNY{I|L} 9 3 + 50.824 0 0 4.1506 4.1506 84.03 0 0 0 0.9151498112134959 40.36683765109139 0.9151498112134959 6.94537812595911 0 0.4247425010840047 0 0.566901560044258 0.805462187404089 [YN][HD]TWNY{I|L};[YN]{[ES]|[DT]|[{I|L}C]}HWNY{I|L};[YN][HD]TWGGY{I|L};[YN]{[ES]|[DT]|[{I|L}C]}HWGGY{I|L};{[HG]|PP}[DV]WT[NS][Y{M(Oxidation (M))|F}] 4.1506;3.5834;3.3986;2.8314;0.20124 -;-;-;-;- 415 NaN NaN 175459.4 NaN 8476 2871 11348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11350 53.851 NaN 378310 35 0 22611 0.261 + 7606 FYHKYFNYL 9 69 647.8164504130114 1293.6183478928226 2 647.8167724609375 MULTI HCD FTMS 0 0 0 11348 93069.8203125 0.10128182679000358 21 -0.5425605773925781 2 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 57.72198328787511 0.020768266150574023 2 [Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L} 9 2 + 60.104 0 0 4.6462 4.6462 82.305 0 0 0 4.762036441594191 52.65662222408956 4.762036441594191 1.2371250542002343 0 1.4247425010840047 0 0 0.805462187404089 [Y{M(Oxidation (M))|F}]HKYN{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}NY{I|L};[Y{M(Oxidation (M))|F}]HK{M(Oxidation (M))|F}YNY{I|L};[Y{M(Oxidation (M))|F}]HKYGG{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]HKY{M(Oxidation (M))|F}GGY{I|L};[Y{M(Oxidation (M))|F}]HK{M(Oxidation (M))|F}YGGY{I|L} 4.6462;4.5506;3.949;3.9344;3.8387;3.2372 -;+;-;-;-;- + 463 NaN NaN 145286.5 NaN 8477 2871 11348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11351 53.855 NaN 218990 35 0 14816 0.261 + 7657 FYITSRTQF 9 62 581.798804633902 NaN 0 581.7988891601562 PEAK HCD FTMS 0 0 0 11348 61936.28125 0.8621429371508487 -1 0.032810211181640625 3 Unmodified _FYITSRTQF_ ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC 43.77239144664712 0.06617713280084607 2 {I|L}{M(Oxidation (M))|F}V[DV]{I|L} 6 8 24.442 0 0 2.1042 0 0 165.07919069746066 307.1085299127563 472.18772061021696 0 0 0 0 0 1 0 0.3807196863200844 0 {I|L}{M(Oxidation (M))|F}V[DV]{I|L} 2.1042 - 116 + NaN NaN 123286.3 NaN 8478 2871 11348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11352 53.858 NaN 502290 35 0 71266 0.261 + 8346 GYIERPQLI 9 65 544.8085408954453 1087.6025288576905 2 544.8089599609375 MULTI HCD FTMS 0 0 0 11348 162558.546875 0.29900739431883633 -4 0.10136795043945312 4 Unmodified _GYIERPQLI_ ENSG00000164329|ENST00000453514|TENT2;nc|ENSG00000164329|Q6PIY7-2|TENT2 66.45667989310934 0.010234776021261575 2 [YG]{I|L}ER[QP]{I|L}{I|L} 9 0 + 80.155 0 0 7.3699 7.3699 88.58 0 0 0 6.748650278674049 6.748650278674049 6.748650278674049 5.568109453757657 0 2.305462187404089 2 0 0.4247425010840047 + + [YG]{I|L}ER[QP]{I|L}{I|L};[YG]{I|L}ER{I|L}[QP]{I|L};[YG]{I|L}[RP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]R[QP]{I|L}{I|L};[YT][TP]R[QP]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]R{I|L}[QP]{I|L};[YT][TP]R{I|L}[QP]{I|L} 7.3699;6.858;4.5188;2.7984;2.7256;2.2865;2.2137 +;-;-;-;-;-;- + 270 NaN NaN 162879.4 NaN 8479 2871 11348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11353 53.861 NaN 157920 35 0 8300.1 0.261 + -1 RSYKSCQVM 9 72 559.2602461130803 1116.5059392929604 2 559.2606201171875 MULTI HCD FTMS 0 0 0 11348 67783.703125 0.16772546137331173 13 -0.32391357421875 5 Oxidation (M) _RSYKSCQVM(Oxidation (M))_ REV__ENST00000504952.1_1_4:71863862-71863892:+|nuORF 25.399314129420986 0.14091189997036632 2 [YT]Q{NN|[MP]|[D{I|L}]|[EV]}Q 6 -1 49.71 0 0 4.4523 0 0 0 365.1438082330688 365.1438082330688 29.225534297491294 0 0 0 0 0.9247425010840047 2 0.7302046884880937 0.3494850021680094 [YT]Q{NN|[MP]|[D{I|L}]|[EV]}Q 4.4523 - 134 + NaN NaN 120057.5 NaN 8480 2871 11348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11354 53.865 NaN 109800 35 0 11070 0.261 + 33130 YEDAHFSF 8 60 508.211988100589 NaN 0 508.2119445800781 PEAK HCD FTMS 0 0 0 11348 23195.251953125 0.7831384626178997 35 -0.74658203125 6 Unmodified _YEDAHFSF_ REV__ENSG00000182134|ENST00000368824|TDRKH;REV__nc|ENSG00000182134|Q9Y2W6-3|TDRKH;REV__TDRKH|p.E309Q|1|0.28|ENSG00000182134|chr1:151776558-151776558|C/G|missense_variant 5.760428011301431 0.38822285293237185 2 S 1 -1 5.4846 0 0 0.54066 0 0 399.0689214142655 525.2941988580686 924.3631202723341 0 0 0 0 0 0 0 0 0 S 0.54066 + + 10 + NaN NaN 98458 NaN 8481 2871 11348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11356 53.87 NaN 728190 35 0 64683 0.327 + 18256 MPDVDLHL 8 87 478.23150982867156 954.4484667241431 2 478.23138427734375 MULTI HCD FTMS 0 0 0 11355 344961.71875 0.5599710872700187 -25 0.5365142822265625 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 72.062 0 0 7.5502 7.5502 92.042 0 0 0 6.906140654642812 53.02124182077982 6.906140654642812 9.299945962651336 0 2.305462187404089 0 1.7104093769761874 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE 7.5502;6.5758;4.8759 +;+;- + 378 NaN NaN 196438.9 NaN 8482 2872 11355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11357 53.874 NaN 995990 35 0 94828 0.261 + 22053 QGLLSRLR 8 79 471.79549918921566 NaN 0 471.78466796875 PEAK HCD FTMS 0 0 0 11355 27267.5859375 0.93660743989858 13 -0.34014892578125 2 Unmodified _QGLLSRLR_ REV__LTR88b_dup1331|chr15:56885665-56885983:-|1.745851856901987|0.0198811332927147|6.46|522.0|3|2|sense 13.50788311687929 0.38822285293237185 2 KVV{I|L}AD 6 -1 36.177 0 0 3.8422 0 0 131.11701132898298 182.05703149967033 313.17404282865334 0 0 0 0 0 0 0 0.6747425010840047 0.3054621874040891 KVV{I|L}AD 3.8422 - 108 + NaN NaN 258730.5 NaN 8483 2872 11355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11358 53.878 NaN 632520 35 0 101190 0.261 + 16727 LYANMFERL 9 87 586.7918884742262 1171.5692240152523 2 586.7924194335938 MULTI HCD FTMS 0 0 0 11355 322198.46875 1 0 0 3 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 114.18643581695662 0.002258955990713129 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 111.44 0 0 9.5118 9.5118 93.802 0 0 0 91.2303994842658 9.009461452434238 9.009461452434238 9.208187539523749 0 2.6989700043360187 2 0.805462187404089 0.6549471895720985 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE{I|L} 9.5118;8.7258;8.0763;7.3827;6.9767;6.2831;6.1456;6.0856;5.6752;5.3067 +;-;+;-;-;-;-;-;-;- + 1382 + NaN NaN 206315.6 NaN 8484 2872 11355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11359 53.881 NaN 606280 35 0 80836 0.261 + 35448 YYEKQFPEI 9 83 608.7978301229484 1215.5811073126968 2 608.7987670898438 MULTI HCD FTMS 0 0 0 11355 237138.015625 0.5578779056966073 -2 0.0556488037109375 4 Unmodified _YYEKQFPEI_ ENSG00000141027|ENST00000268712|NCOR1;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2 88.36371040165146 0.004568843997105255 2 YYEKQ{M(Oxidation (M))|F}PE{I|L} 9 0 + 93.092 0 0 7.6582 7.6582 91.483 0 0 0 3.0717204353666574 3.0717204353666574 3.0717204353666574 9.208187539523749 0 2.504432191740108 2 0.2614393726401688 0.6382104921644451 + + YYEKQ{M(Oxidation (M))|F}PE{I|L};YYEK[AG]{M(Oxidation (M))|F}PE{I|L};[YT][YV]{[QG]|[NA]}{M(Oxidation (M))|F}PE{I|L};YY[{I|L}P][Y{I|L}]Q{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.6582;6.9007;2.9434;0.93013 +;-;-;- + 773 NaN NaN 184585.2 NaN 8485 2872 11355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11360 53.884 NaN 327520 35 0 67926 0.261 -1 FFDCLNWR 8 72 579.2630011394186 1156.5114493456372 2 579.2628173828125 MULTI HCD FTMS 0 0 0 11355 35842.24609375 0.26774510180401706 3 -0.09193801879882812 5 Carbamidomethyl (C) _FFDC(Carbamidomethyl (C))LNWR_ ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2 5.760428011301431 0.5334459684533844 2 {I|L}A 2 -1 10.802 0 0 0.93401 0 0 0 969.4173370855582 969.4173370855582 3.7236374744834695 0 0 0 0 0 0 0 0 {I|L}A 0.93401 - 169 + NaN NaN 156052.8 NaN 8486 2872 11355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11361 53.888 NaN 182070 35 0 14221 0.261 + 15834 LPIKDGKLVF 10 69 565.3525413711878 NaN 0 565.3527221679688 PEAK HCD FTMS 0 0 0 11355 39665.62109375 0.9197686882606656 1 -0.022861480712890625 6 Unmodified _LPIKDGKLVF_ ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF 27.223235318498237 0.22212361791506222 2 {I|L}V 2 8 10.969 0 0 0.97184 0 0 165.07966797128603 748.4360445611936 913.5157125324797 0 0 0 0 0 0 0 0 0 + {I|L}V 0.97184 + + 34 + NaN NaN 119181 NaN 8487 2872 11355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11363 53.892 NaN 2005800 35 0 301120 0.326 + 17953 MITDLEERL 9 106 568.2867272456716 1134.5589015581431 2 568.2870483398438 MULTI HCD FTMS 0 0 0 11362 1073324.875 0.9504076971233412 2 -0.0690765380859375 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 117.76058876431921 0.001675465467887476 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 98.835 0 0 8.7113 8.7113 89.808 0 0 0 13.313470692558127 55.78936192480825 13.313470692558127 3.2834093268442643 0 2.8182503180159344 2 1.6549471895720984 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DT{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DT{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[QT]QE[VG]{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}E{I|L}{[RE]|[WV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DT{I|L}ER{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[KS]QE[VG]{I|L} 8.7113;8.4219;7.4493;7.437;7.1879;6.8985;6.3836;6.3655;5.926;4.8602 +;-;-;+;-;-;-;-;-;- + 4886 NaN NaN 398176.8 NaN 8488 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11364 53.897 NaN 761620 35 0 148860 0.261 + 29377 TYQDIQNTI 9 62 548.2694184151188 1094.5242838970375 2 548.269775390625 MULTI HCD FTMS 0 0 0 11362 328434.96875 0.1020493829605929 17 -0.4547615051269531 2 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 97.74103586103693 0.004323122048066454 2 [YT]QD{I|L}QNT{I|L} 9 0 + 97.93 0 0 8.9472 8.9472 93.321 0 0 0 15.568109453757657 16.478174818886373 15.568109453757657 9.208187539523749 0 2.079689690656103 2 0.7742275032520141 0.3807196863200844 + + [YT]QD{I|L}QNT{I|L};[YT]QD{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QNT{I|L};[YT]QD{I|L}QGGT{I|L};{[QS]|[NT]}{I|L}EYQNT{I|L};[YT]QD{I|L}[AG]GGT{I|L};[YT][AG]D{I|L}[AG]NT{I|L};[YT][AG]D{I|L}QGGT{I|L};{[QS]|[NT]}[YE]{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L} 8.9472;8.1059;8.1059;8.1059;7.5249;7.2686;7.2686;7.2686;6.7254;6.6836 +;-;-;-;-;-;-;-;-;- + 925 NaN NaN 203974.7 NaN 8489 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11365 53.9 NaN 1118200 35 0 386660 0.262 + 26855 SYIMICNVLEE 11 69 438.5422156130703 1312.604817439411 3 438.5424499511719 MULTI HCD FTMS 0 0 0 11362 280041.21875 0.7754161256065375 -1 0.022861480712890625 3 Unmodified _SYIMICNVLEE_ tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1 11.065280125700339 0.3606702632373656 2 SY{I|L} 3 8 55.445 0 0 4.2241 0 0 0 946.4022832947725 946.4022832947725 29.568174985992783 0 0 0 0 0.9247425010840047 2 0 0 + SY{I|L} 4.2241 + + 189 + NaN NaN 251848.7 NaN 8490 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11366 53.904 NaN 453920 35 0 64254 0.261 + 4337 EVVIYVVER 9 70 553.3161001865748 1104.6176474399495 2 553.3164672851562 MULTI HCD FTMS 0 0 0 11362 129923.5546875 0.6098578077879192 -2 0.0457000732421875 4 Unmodified _EVVIYVVER_ ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54 114.18643581695662 0.002258955990713129 2 {NN|[MP]|[D{I|L}]|[EV]}V{I|L}YVVER 9 0 + 104.75 0 0 9.4827 9.4827 97.875 0 0 0 14.37580271024207 12.587418566968154 12.587418566968154 36.950462572043904 0 3.2134679910804405 1.6989700043360187 2.912437995416459 0 + + {NN|[MP]|[D{I|L}]|[EV]}V{I|L}YVVER;{NN|[MP]|[D{I|L}]|[EV]}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}R 9.4827;6.1376 +;- + 269 NaN NaN 152787.4 NaN 8491 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11367 53.907 NaN 116690 35 0 22877 0.263 + 12164 KKKKKKVKKI 10 49 419.31559279656494 NaN 0 419.3156433105469 PEAK HCD FTMS 0 0 0 11362 54991.15234375 0.6042843182477469 22 -0.5481033325195312 5 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0.15932191953741626 0.34004793154798674 2 P 1 -1 6.9897 0 0 0.83547 0 0 349.3279191362955 387.20310388736567 736.5310230236612 0 0 0 0 0 0 0 0 0 P 0.83547 - 2 + NaN NaN 103342.2 NaN 8492 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11368 53.91 NaN 319640 35 0 17741 0.261 + 7206 FSNLNELQF 9 78 556.2744986448827 1110.5344443565652 2 556.27490234375 MULTI HCD FTMS 0 0 0 11362 33371.87109375 0.314651911310226 4 -0.1148223876953125 6 Unmodified _FSNLNELQF_ ENSG00000243729|ENST00000641768|OR5V1 19.256988751693697 0.19398022840297344 2 MPD{I|L}{M(Oxidation (M))|F} 5 7 33.22 0 0 2.9913 0 0 489.2420826642594 0 489.2420826642594 0 20.656753288559813 0 0 0 0.4247425010840047 0 0.3054621874040891 0 MPD{I|L}{M(Oxidation (M))|F} 2.9913 - 281 NaN NaN 135484.9 NaN 8493 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11369 53.914 NaN 73665 35 0 17738 0.262 + -1 NSSDPLHC 8 32 465.19269955476716 928.3708461763343 2 465.19268798828125 MULTI HCD FTMS 0 0 0 11362 25539.427734375 0.6313883091695721 1 -0.0329132080078125 7 Carbamidomethyl (C) _NSSDPLHC(Carbamidomethyl (C))_ REV__ENST00000317025.12_1_8:38131368-38131458:-|nuORF 4.75600775471527 0.5349361699807423 2 N[NS]W 4 -1 18.06 0 0 1.9453 0 0 0 424.16465173892817 424.16465173892817 18.05970632012567 0 0 0 0 0 0 0.4247425010840047 0 N[NS]W 1.9453 - 2 + NaN NaN 108943.9 NaN 8494 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11370 53.917 NaN 201250 35 0 8628.3 0.261 + 34028 YMRLKEEL 8 66 541.2883250146537 1080.5620970961072 2 541.7849731445312 MULTI HCD FTMS 0 0 0 11362 8400.1484375 0.2676799088331004 -6 0.14706802368164062 8 Unmodified _YMRLKEEL_ ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8 13.90604991867851 0.4914777452512057 2 A{I|L}{I|L}[KA]HY 7 6 38.32 0 0 3.5463 0 0 266.0820931176982 0 266.0820931176982 0 20.361300909143054 0 0 0 1.2614393726401687 0 0 0 A{I|L}{I|L}[KA]HY 3.5463 - 371 + NaN NaN 127159.4 NaN 8495 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11371 53.92 NaN 103560 35 0 8642.9 0.261 + 8670 HFIAEHYMF 9 47 597.7736380194214 1193.5327231056426 2 597.7742309570312 MULTI HCD FTMS 0 0 0 11362 36116.96484375 0.6261779342366894 13 -0.3401641845703125 9 Unmodified _HFIAEHYMF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 6.723162845929126 0.3000504726104499 2 YM{M(Oxidation (M))|F} 3 6 26.198 0 0 2.195 0 0 734.3481922834 0 734.3481922834 0 15.740312677277187 0 0 0 0 0 0 0 + YM{M(Oxidation (M))|F} 2.195 + + 27 NaN NaN 112070.8 NaN 8496 2873 11362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11373 53.925 NaN 4419700 35 0 588570 0.327 + 881 AYAIIKEEL 9 99 525.2974650483845 1048.580377163569 2 525.2976684570312 MULTI HCD FTMS 0 0 0 11372 2772565.5 1 0 0 1 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 122.17920374332846 0.0010792739174387011 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 9 0 + 93.483 0 0 8.9152 8.9152 91.593 0 0 0 11.026136655227958 47.81878158598217 11.026136655227958 7.174413775404261 0 2.1861818737241734 2 0.6549471895720984 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}VASE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}V{[SA]|[TG]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AV{[SA]|[TG]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}AKEE{I|L};[{I|L}A]YA{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}EEK{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}KAEE{I|L};[{I|L}A]Y{I|L}AKEE{I|L} 8.9152;8.231;7.6324;6.7744;6.5092;6.4135;6.2456;5.9059;5.6714;5.0266 +;-;-;-;-;-;-;-;-;- + 2224 NaN NaN 773305.2 NaN 8497 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11374 53.93 NaN 227210 35 0 29733 0.261 + 14145 LAEGLRTVL 9 57 486.29785498103104 970.5811570288621 2 486.29779052734375 MULTI HCD FTMS 0 0 0 11372 126874.546875 0.5199238475321714 3 -0.0819091796875 2 Unmodified _LAEGLRTVL_ ENSG00000111331|ENST00000228928|OAS3 38.61474834105838 0.07170385841135779 2 {I|L}AEG 4 5 53.18 0 0 5.4792 0 0 0 597.3731173150999 597.3731173150999 41.414412723804546 0 0 0 0 1 1.6989700043360187 0.805462187404089 0 + {I|L}AEG 5.4792 + + 75 + NaN NaN 125061.9 NaN 8498 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11375 53.933 NaN 325830 35 0 64902 0.261 + 24815 RYPLLLQKI 9 70 572.3659663502481 1142.717379767296 2 572.3661499023438 MULTI HCD FTMS 0 0 0 11372 145332.1875 0.7724050581193438 3 -0.0819091796875 3 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 51.629811660486645 0.02929079705179888 2 [YR][{I|L}P]{I|L}{I|L}QK{I|L} 9 0 + 59.869 0 0 5.2392 5.2392 86.263 0 0 0 8.692803136799157 8.692803136799157 8.692803136799157 8.692803136799157 0 2.0994850021680094 0 0 0 + + [YR][{I|L}P]{I|L}{I|L}QK{I|L};RY[{I|L}P]{I|L}{I|L}QK{I|L};[YR][{I|L}P]{I|L}{I|L}[AG]K{I|L};RY[{I|L}P]{I|L}{I|L}[AG]K{I|L} 5.2392;4.4784;4.4333;3.6726 +;+;-;- + 160 NaN NaN 147049.3 NaN 8499 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11376 53.937 NaN 584650 35 0 53995 0.261 + 34299 YPDSHLPTL 9 89 521.7638635348422 1041.5131741364844 2 521.763916015625 MULTI HCD FTMS 0 0 0 11372 142257.859375 0.2796036934884868 -10 0.261962890625 4 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 96.28474662873226 0.004361282420133734 2 YPD[HS]{I|L}PT{I|L} 9 0 + 57.947 0 0 5.5637 5.5637 91.755 0 0 0 36.49297586127716 11.439389643433628 11.439389643433628 34.03720958383822 0 1.8494850021680094 1.0969100130080565 0.8851518780601924 0 + + YPD[HS]{I|L}PT{I|L};YPD[QP][NP]V{I|L};[TP]{[QD]|[EN]|[WG]|[KD]|[RS]}[KP]DE{I|L};Y[{I|L}A][YR]DE{I|L};[TP]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YE]Y;[TP]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QP]{[ET]|[MV]} 5.5637;2.2956;2.2601;0.70538;0.39392;0.25176 +;-;-;-;-;- + 416 + NaN NaN 173731.3 NaN 8500 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11377 53.94 NaN 270140 35 0 40505 0.261 + -1 WCIIPMYIC 9 59 579.2630011394186 1156.5114493456372 2 579.2630615234375 MULTI HCD FTMS 0 0 0 11372 40846.06640625 0.3051241314405816 5 -0.14093780517578125 5 Oxidation (M) _WCIIPM(Oxidation (M))YIC_ REV__ENST00000511393.4_1_4:186321154-186321376:+|nuORF 2.302733041254933 0.33356062215410776 2 TN{M(Oxidation (M))|F} 3 -1 10.384 0 0 0.89785 0 0 166.05449902633887 625.3133548157899 791.3678538421289 0 0 0 0 0 0 0 0 0.3807196863200844 TN{M(Oxidation (M))|F} 0.89785 - 105 + NaN NaN 123755.7 NaN 8501 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11378 53.943 NaN 367750 35 0 19624 0.261 -1 LPYQQHVM 8 75 516.2512023604917 1030.4878517877833 2 516.7529296875 MULTI HCD FTMS 0 0 0 11372 62563.20703125 0.4873923053505064 2 -0.065643310546875 6 Oxidation (M) _LPYQQHVM(Oxidation (M))_ ENST00000307885.4_1_12:49177206-49177257:-|nuORF 10.183394434864962 0.5188676124868831 2 E{M(Oxidation (M))|F} 2 -1 17.251 0 0 1.674 0 0 736.399119953602 0 736.399119953602 0 5.4325097911376385 0 0 0 0 0 0.3807196863200844 0 E{M(Oxidation (M))|F} 1.674 - 138 + NaN NaN 173735.9 NaN 8502 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11379 53.947 NaN 154200 35 0 33282 0.261 + 310 AFQLDQHKPFF 11 58 459.9030782787133 NaN 0 459.9033508300781 PEAK HCD FTMS 0 0 0 11372 31695.58984375 0.6505424052284102 1 -0.036163330078125 7 Unmodified _AFQLDQHKPFF_ REV__ENSG00000198917|ENST00000361256|SPOUT1;REV__ENST00000466556.5_1_9:131588609-131591411:-|nuORF 6.623454094837244 0.3233313116562792 2 Y 1 -1 6.9897 0 0 0.76158 0 0 71.35899971973284 680.3612553343123 751.7202550540452 0 0 0 0 0 0 0 0 0 Y 0.76158 - 20 + NaN NaN 125217.6 NaN 8503 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11380 53.95 NaN 197970 35 0 15308 0.261 + 17185 LYMKPRMKI 9 48 590.3425934417718 NaN 0 590.3427124023438 PEAK HCD FTMS 0 0 0 11372 44472.75390625 0.6906294857075194 -1 0.0329132080078125 8 Unmodified _LYMKPRMKI_ ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4 6.723162845929126 0.26266733336404485 2 D{I|L} 2 8 18.711 0 0 1.5875 0 0 259.19132469281834 688.3457125299436 947.5370372227619 0 0 0 0 0 0.7742275032520141 0 0 0 D{I|L} 1.5875 - 5 + NaN NaN 118130.9 NaN 8504 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11381 53.953 NaN 156250 35 0 40256 0.261 + -1 VIVMGEEEMM 10 50 600.2528403585453 1198.4911277838905 2 600.252685546875 MULTI HCD FTMS 0 0 0 11372 83645.359375 0.6931686483050603 -2 0.055774688720703125 9 2 Oxidation (M) _VIVM(Oxidation (M))GEEEMM(Oxidation (M))_ REV__ENSG00000176783|ENST00000319449|RUFY1;REV__nc|ENSG00000176783|Q96T51-2|RUFY1;REV__nc|ENSG00000176783|Q96T51-3|RUFY1 10.823927491677226 0.4098686510432541 2 [{I|L}V]{I|L}D 4 -1 48.5 0 0 4.0467 0 0 0 755.2049654596311 755.2049654596311 22.53083433768431 0 0 0 0 0.805462187404089 2 0.4247425010840047 0 [{I|L}V]{I|L}D 4.0467 - 22 + NaN NaN 108781.3 NaN 8505 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11382 53.957 NaN 116130 35 0 11410 0.261 + 33957 YLSRQKPHKC 10 41 630.3372029870114 1258.6598530408228 2 630.337646484375 MULTI HCD FTMS 0 0 0 11372 20175.0078125 0.05807978464427225 14 -0.3695869445800781 10 Unmodified _YLSRQKPHKC_ ENSG00000090612|ENST00000536435|ZNF268;ENST00000536899.6_1_12:133758152-133781113:+|nuORF;nc|ENSG00000090612|Q14587-2|ZNF268;nc|ENSG00000090612|Q14587-3|ZNF268;ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant 6.2057823575117 0.44245551207394906 2 {I|L} 1 9 4.6041 0 0 0.36579 0 0 861.4286651519541 281.1251619928344 1142.5538271447886 0 0 0 0 0 0 0 0 0 + {I|L} 0.36579 + + 4 + NaN NaN 99359.8 NaN 8506 2874 11372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11384 53.962 NaN 1937300 35 0 299730 0.327 + 660 APLEDEATL 9 98 479.73994085724706 957.4653287812941 2 479.7401123046875 MULTI HCD FTMS 0 0 0 11383 1286991.625 0.35078030387120746 -4 0.114776611328125 1 Unmodified _APLEDEATL_ ENSG00000149806|ENST00000529639|FAU 147.8311659463005 1.1118996804784084E-05 2 [PA]{I|L}EDEAT{I|L} 9 0 + 95.575 0 0 9.9821 9.9821 95.473 0 0 0 11.637867533881362 16.478174818886373 11.637867533881362 11.637867533881362 0 1.9634679910804405 1.6989700043360187 1.0356668758921828 0 + + [PA]{I|L}EDEAT{I|L};{[QN]|[E{I|L}]|[KN]}PADEAT{I|L};[PA]{I|L}DEEAT{I|L};[{I|L}P]AEDEAT{I|L};[{I|L}P]EADEAT{I|L};{[QN]|[E{I|L}]|[KN]}PDAEAT{I|L};{[QN]|[E{I|L}]|[KN]}PGEEAT{I|L};[PA]{I|L}EDE[{I|L}T]A;[{I|L}P]ADEEAT{I|L};[{I|L}P]EDAEAT{I|L} 9.9821;8.7666;8.7344;8.6232;8.3217;7.6715;7.5189;7.4389;7.3756;7.2266 +;-;-;-;-;-;-;-;-;- + 2185 NaN NaN 388211.4 NaN 8507 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11385 53.966 NaN 1295700 35 0 308070 0.261 + 7613 FYHKYFNYL 9 69 432.21330696383626 1293.6180914917088 3 432.2132568359375 MULTI HCD FTMS 0 0 0 11383 320708.3125 0.06739485246541717 25 -0.5427207946777344 2 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 13.042465956692817 0.2476723265019929 2 Y{I|L} 2 7 22.474 0 0 1.7373 0 0 999.4609697649495 0 999.4609697649495 0 9.710040265111566 0 0 0 0.5 0 0 0 + Y{I|L} 1.7373 + + 16 + NaN NaN 274231.3 NaN 8508 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11386 53.97 NaN 728330 35 0 52163 0.261 + -1 KDCMHCAF 8 85 506.1955923376212 1010.3766317420424 2 506.19561767578125 MULTI HCD FTMS 0 0 0 11383 232165.125 0.4013529978880207 -6 0.17046356201171875 3 Carbamidomethyl (C) _KDC(Carbamidomethyl (C))MHCAF_ REV__ENSG00000198081|ENST00000651870|ZBTB14 2.8892196856762586 0.5377058178582064 2 EAT{I|L} 4 -1 20.355 0 0 2.0146 0 0 578.1545277326187 0 578.1545277326187 0 4.781381439366186 0 0 0 0.6989700043360187 0 0 0 EAT{I|L} 2.0146 - 89 NaN NaN 212252.3 NaN 8509 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11387 53.973 NaN 623040 35 0 142330 0.261 + 656 APLCLWYD 8 69 490.73105151461414 979.4475500960283 2 490.7312927246094 MULTI HCD FTMS 0 0 0 11383 278272.125 0.3572027472259018 -4 0.114776611328125 4 Unmodified _APLCLWYD_ REV__nc|ENSG00000198431|Q16881-6|TXNRD1 52.693072896333916 0.11109454085891299 2 AP{I|L}E 4 -1 74.483 0 0 7.6045 0 0 0 566.2070826380224 566.2070826380224 27.72538057041615 0 0 0 0 1.4247425010840047 1.6989700043360187 1.1307196863200843 0 AP{I|L}E 7.6045 - 258 + NaN NaN 180712 NaN 8510 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11388 53.976 NaN 254690 35 0 33347 0.261 + 1515 AYVGNLPRI 9 57 501.79020797692584 1001.5658630206517 2 501.7903747558594 MULTI HCD FTMS 0 0 0 11383 120037.0703125 0.18693519449661442 13 -0.3334236145019531 5 Unmodified _AYVGNLPRI_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 39.957323273324995 0.06554068735427583 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}[PA]{I|L} 9 3 + 58.618 0 0 5.8527 5.8527 93.121 0 0 0 15.425967595951988 58.52954353761518 15.425967595951988 58.61818737241734 0 1.8494850021680094 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}[PA]{I|L} 5.8527 - 48 NaN NaN 120458 NaN 8511 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11389 53.979 NaN 118160 35 0 22914 0.261 + 30829 VPYEKGFAL 9 46 512.2790592969036 1022.5435656606072 2 512.279296875 MULTI HCD FTMS 0 0 0 11383 36684.34765625 0.33402765980997484 4 -0.10477447509765625 6 Unmodified _VPYEKGFAL_ ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H 7.608950283845883 0.29333554423920943 2 VPYE 4 5 25.662 0 0 2.5096 0 0 0 531.2924898736936 531.2924898736936 14.095019080956062 0 0 0 0 0 0 0 0 + VPYE 2.5096 + + 55 + NaN NaN 100929.5 NaN 8512 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11390 53.983 NaN 111730 35 0 13272 0.261 + 14048 KYVGQLAVL 9 50 495.80263031785495 989.5907077025099 2 495.8024597167969 MULTI HCD FTMS 0 0 0 11383 54551.44140625 1 0 0 7 Unmodified _KYVGQLAVL_ ENSG00000118193|ENST00000367350|KIF14 20.453626601364224 0.18364154288633264 2 {I|L}AV{I|L} 4 5 34.781 0 0 3.5147 0 0 575.3043690412125 0 575.3043690412125 0 21.682437647924218 0 0 0 1 0 0 0 + {I|L}AV{I|L} 3.5147 + + 26 NaN NaN 98060.1 NaN 8513 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11391 53.986 NaN 275180 35 0 30692 0.261 + 24108 RYALQMEQL 9 61 576.297401729668 1150.5802505261358 2 576.2975463867188 MULTI HCD FTMS 0 0 0 11383 84614.515625 0.45642809359587266 -4 0.114776611328125 8 Unmodified _RYALQMEQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 57.24910588100465 0.021429789259086996 2 {I|L}QMEQ{I|L} 6 3 62.454 0 0 5.428 0 0 390.20137221504064 0 390.20137221504064 0 47.276296993281406 0 0 0 1.9802046884880937 0 0 0 + {I|L}QMEQ{I|L} 5.428 + + 354 NaN NaN 136975.6 NaN 8514 2875 11383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11393 53.991 NaN 578910 35 0 81787 0.327 + -1 NNVCHILQ 8 74 499.2482031078263 996.4818532824527 2 499.2586364746094 MULTI HCD FTMS 0 0 0 11392 39679.64453125 0.7769882272923262 2 -0.049137115478515625 1 Carbamidomethyl (C) _NNVC(Carbamidomethyl (C))HILQ_ REV__ENSG00000122707|ENST00000377966|RECK;REV__ENST00000475774.5_1_9:36066843-36085921:+|nuORF;REV__ENST00000479053.1_1_9:36036974-36085209:+|nuORF 9.347437153973935 0.5250182646323369 2 REVA{I|L} 5 -1 26.198 0 0 2.629 0 0 410.168260642775 0 410.168260642775 0 -1.4266750356873104 -1.4266750356873104 0 0 0 0 0 0 REVA{I|L} 2.629 - 230 NaN NaN 179613.4 NaN 8515 2876 11392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11394 53.995 NaN 277310 35 0 45998 0.261 + 24816 RYPLLLQKI 9 65 572.3659663502481 1142.717379767296 2 572.3658447265625 MULTI HCD FTMS 0 0 0 11392 125069.2734375 0.6647126220296952 5 -0.11108016967773438 2 Unmodified _RYPLLLQKI_ ENSG00000183111|ENST00000333677|ARHGEF37 47.748688679222035 0.03472022231463587 2 [YR][{I|L}P]{I|L}{I|L}QK{I|L} 9 0 + 55.111 0 0 4.8228 4.8228 86.658 0 0 0 8.172874778693355 47.31939364284848 8.172874778693355 9.208187539523749 0 1.6237125054200234 0 0 0 + + [YR][{I|L}P]{I|L}{I|L}QK{I|L};[YR][{I|L}P]{I|L}{I|L}[AG]K{I|L} 4.8228;4.017 +;- + 75 NaN NaN 136090.8 NaN 8516 2876 11392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11395 53.999 NaN 509640 35 0 130630 0.263 + 26895 SYITEECLKKL 11 56 442.9038778031207 1325.689804009562 3 442.90362548828125 MULTI HCD FTMS 0 0 0 11392 84777.4609375 0.7477440404334545 2 -0.049137115478515625 3 Unmodified _SYITEECLKKL_ ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C;UBE3C-PTPRN2|1|fusion 14.837902256254086 0.32779928292324945 2 SY{I|L} 3 8 52.435 0 0 3.9553 0 0 0 959.4861630378629 959.4861630378629 33.738350322034236 0 0 0 0 0.9247425010840047 2 0 0 + SY{I|L} 3.9553 + + 20 + NaN NaN 170149 NaN 8517 2876 11392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11396 54.002 NaN 258140 35 0 27641 0.261 + 15504 LPDMVVSHL 9 66 513.768193570899 NaN 0 513.7682495117188 PEAK HCD FTMS 0 0 0 11392 85490.609375 0.06975521135804856 62 -1.3638458251953125 4 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 41.8396318013385 0.07237558272173583 2 HS 2 8 18.711 0 0 1.8246 0 0 131.0955594712288 667.3134859674436 798.4090454386724 0 0 0 0 0 0.5 0 0.4247425010840047 0 HS 1.8246 - 44 + NaN NaN 122495.1 NaN 8518 2876 11392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11398 54.007 NaN 1139400 35 0 100990 0.327 + 18778 NADAIVVKL 9 87 471.7845954936088 941.5546380540176 2 471.7846374511719 MULTI HCD FTMS 0 0 0 11397 634141.6875 0.7190067253634534 3 -0.07854461669921875 1 Unmodified _NADAIVVKL_ ENSG00000197157|ENST00000354725|SND1 128.57297698046145 0.0006915168155602875 2 {[QG]|[NA]}DA{I|L}VVK{I|L} 9 0 + 122.4 0 0 13 13 98.758 0 0 0 37.15469555044784 16.478174818886373 16.478174818886373 37.04750954047803 0 2.555462187404089 1.6989700043360187 0.6747425010840047 2.0253187046026264 + + {[QG]|[NA]}DA{I|L}VVK{I|L};{[QG]|[NA]}DAVV{I|L}K{I|L};NADA{I|L}VVK{I|L};{[QN]|[E{I|L}]|[KN]}QNVVK{I|L};{[QN]|[E{I|L}]|[KN]}[AG]NVVK{I|L};{[QN]|[E{I|L}]|[KN]}QGGVVK{I|L};{[QN]|[E{I|L}]|[KN]}[AG]GGVVK{I|L};{[QN]|[E{I|L}]|[KN]}Q[QA]{I|L}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[EP][QT]K{I|L};[K{I|L}][DP][QT]K{I|L} 13;9.0649;9.0535;6.2197;5.236;5.236;4.258;2.2849;2.2306;1.5543 +;-;+;-;-;-;-;-;-;- + 425 NaN NaN 258419.5 NaN 8519 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11399 54.012 NaN 947870 35 0 137310 0.261 + 8347 GYIERPQLI 9 70 544.8085408954453 1087.6025288576905 2 544.8087768554688 MULTI HCD FTMS 0 0 0 11397 442989.8125 0.8148278395184496 2 -0.05902862548828125 2 Unmodified _GYIERPQLI_ ENSG00000164329|ENST00000453514|TENT2;nc|ENSG00000164329|Q6PIY7-2|TENT2 85.64151623876279 0.004640175941193596 2 [YG]{I|L}ERPQ{I|L}{I|L} 9 0 + 93.128 0 0 8.5627 8.5627 92.85 0 0 0 13.668278513033627 13.668278513033627 13.668278513033627 9.208187539523749 0 2.3494850021680094 2 0 0.7059771852360797 + + [YG]{I|L}ERPQ{I|L}{I|L};[YG]{I|L}ERP[AG]{I|L}{I|L};[YG]E{I|L}RPQ{I|L}{I|L};[YG]{I|L}ER{I|L}[QP]{I|L};[YG]E{I|L}RP[AG]{I|L}{I|L};[YG]E{I|L}R{I|L}[QP]{I|L};{[QN]|[E{I|L}]|[KN]}[YG]RPQ{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}R[YG]PQ{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG][VG]PQ{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]RP[AG]{I|L}{I|L} 8.5627;7.716;7.3875;6.6135;6.5408;5.4383;3.9912;3.3238;3.1445;3.1445 +;-;-;-;-;-;-;-;-;- + 890 NaN NaN 228474.1 NaN 8520 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11400 54.015 NaN 463870 35 0 68257 0.261 + 35449 YYEKQFPEI 9 68 608.7978301229484 1215.5811073126968 2 608.7982177734375 MULTI HCD FTMS 0 0 0 11397 212551.703125 0.5000374936894812 3 -0.07854461669921875 3 Unmodified _YYEKQFPEI_ ENSG00000141027|ENST00000268712|NCOR1;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2 69.33821966488729 0.009302356455414924 2 YYEKQ{M(Oxidation (M))|F}PE{I|L} 9 0 + 86.85 0 0 7.1447 7.1447 90.537 0 0 0 24.76203644159419 51.9015966992616 24.76203644159419 9.208187539523749 0 1.9247425010840047 2 0 0.7302046884880937 + + YYEKQ{M(Oxidation (M))|F}PE{I|L};YYEK[AG]{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}P[HN][HM]PE{I|L};YY[{I|L}P]{I|L}YQ{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};YY[{I|L}P]{I|L}Y[AG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[EP]{I|L}[{M(Oxidation (M))|F}V]{[QV]|[N{I|L}]|[RA]|[KV]}Q{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[QN]|[E{I|L}]|[KN]}[YQ]PQYY{I|L};[YQ]{[QN]|[E{I|L}]|[KN]}PQYY{I|L};{[QN]|[E{I|L}]|[KN]}PWW[KT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.1447;6.3872;2.9572;1.6876;0.93013;0.91252;0.66262;0.12526;0.028968 +;-;-;-;-;-;-;-;- + 493 NaN NaN 165356.8 NaN 8521 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11401 54.019 NaN 295270 35 0 42445 0.261 + 16728 LYANMFERL 9 70 586.7918884742262 1171.5692240152523 2 586.7923583984375 MULTI HCD FTMS 0 0 0 11397 126744.1953125 0.39337305296395825 5 -0.12096405029296875 4 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 65.47368725323818 0.010552856507075443 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 92.929 0 0 7.932 7.932 91.954 0 0 0 80.95610894364737 9.009461452434238 9.009461452434238 9.208187539523749 0 1.6549471895720984 2 0.805462187404089 0.3252574989159953 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}Y[YN]{[DS]|[MA]|[CV]|TT}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}][DP]R{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}][DP]G[W{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.932;7.146;4.0288;3.5537;2.7677;2.4841;0.62667 +;-;-;-;-;-;- + 257 + NaN NaN 143177 NaN 8522 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11402 54.022 NaN 208260 35 0 36263 0.261 -1 RFDEAYIYM 9 50 612.2740309352452 1222.5335089372902 2 612.2739868164062 MULTI HCD FTMS 0 0 0 11397 71296.0078125 0.6655382425507271 1 -0.032871246337890625 5 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 15.248480904072842 0.22861284681709862 2 AY{I|L}Y{M(Oxidation (M))|F} 5 -1 43.188 0 0 3.5326 0 0 547.2406483380875 0 547.2406483380875 0 40.42337778295522 0 0 0 1 0 0 0 AY{I|L}Y{M(Oxidation (M))|F} 3.5326 + + 35 NaN NaN 128334.2 NaN 8523 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11403 54.025 NaN 408670 35 0 31364 0.261 + 9763 HYILHNSFF 9 66 589.2930776435726 1176.571602353945 2 589.2932739257812 MULTI HCD FTMS 0 0 0 11397 88666.3515625 0.06045100924000369 -8 0.21620941162109375 6 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 85.64151623876279 0.004640175941193596 2 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 89.307 0 0 7.5904 7.5904 91.342 0 0 0 22.376430167995878 53.73380636665303 22.376430167995878 9.208187539523749 0 1.6237125054200234 1.5228787452803376 0.9247425010840047 0 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[WQ][NG]{M(Oxidation (M))|F} 7.5904;6.8078;5.6287;4.613;3.1738 +;-;-;-;- + 217 NaN NaN 167910.3 NaN 8524 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11404 54.029 NaN 272580 35 0 11865 0.261 + 7607 FYHKYFNYL 9 56 647.8164504130114 1293.6183478928226 2 647.81689453125 MULTI HCD FTMS 0 0 0 11397 58207.375 0.06334329703072386 27 -0.5506057739257812 7 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 41.95555342248728 0.056367691549927025 2 K[Y{M(Oxidation (M))|F}]NY{I|L} 6 3 40.495 0 0 3.1303 0 0 447.19090468574376 0 447.19090468574376 0 30.037144051603093 0 0 0 1.305462187404089 0 0 0.805462187404089 + K[Y{M(Oxidation (M))|F}]NY{I|L} 3.1303 + + 29 NaN NaN 149635.8 NaN 8525 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11405 54.032 NaN 184730 35 0 11595 0.261 + 3319 EEIQQRLAQF 10 51 631.3300693755913 1260.6455858179825 2 631.3302001953125 MULTI HCD FTMS 0 0 0 11397 47523.8984375 0.7125275130992865 -2 0.045745849609375 8 Unmodified _EEIQQRLAQF_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 47.594388314883695 0.08653821083322558 2 QA{I|L}[C(Carbamidomethyl (C))K]{I|L}AQ{M(Oxidation (M))|F} 9 5 35.384 0 0 2.8068 0 0 183.09487888614495 0 183.09487888614495 0 17.196596782814815 0 0 0 1.1989700043360187 0 0 0.3807196863200844 QA{I|L}[C(Carbamidomethyl (C))K]{I|L}AQ{M(Oxidation (M))|F} 2.8068 - 71 + NaN NaN 118988.9 NaN 8526 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11406 54.035 NaN 174370 35 0 38604 0.264 + -1 IAYTTICVLCF 11 50 435.21882471573315 1302.6346447473995 3 434.88214111328125 MULTI HCD FTMS 0 0 0 11397 29990.37890625 0.5394164129202729 -14 0.36341094970703125 9 Carbamidomethyl (C) _IAYTTIC(Carbamidomethyl (C))VLCF_ REV__ENST00000394974.2_1_1:58694357-58694534:-|nuORF 2.843284757254958 0.4064509854383032 2 {M(Oxidation (M))|F} 1 -1 18.979 0 0 1.457 0 0 1137.5559989727885 0 1137.5559989727885 0 6.505149978319906 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.457 + + 20 + NaN NaN 114244.8 NaN 8527 2877 11397 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11408 54.04 NaN 1384400 35 0 207320 0.327 + 17954 MITDLEERL 9 99 568.2867272456716 1134.5589015581431 2 568.2869262695312 MULTI HCD FTMS 0 0 0 11407 659157.8125 0.5836710517111457 7 -0.16959381103515625 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 136.39213081522345 0.00021731600835925866 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 115.43 0 0 10.174 10.174 90.595 0 0 0 21.46661299950894 73.05339660620689 21.46661299950894 2.0340219607612653 0 2.9247425010840047 2 2.059894379144197 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L};{M(Oxidation (M))|F}{I|L}TD{I|L}E{I|L}{[RE]|[WV]};{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]TE{I|L};{[RE]|[WV]}{I|L}E[{M(Oxidation (M))|F}V]TE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}T{M(Oxidation (M))|F}RE{I|L};{[QN]|[E{I|L}]|[KN]}RE[{M(Oxidation (M))|F}V]TE{I|L};{[RE]|[WV]}E{I|L}[{M(Oxidation (M))|F}V]T{I|L}E 10.174;9.9947;9.0431;8.202;7.1215;3.7219;3.5931;3.3962;3.3561;2.7702 +;-;-;+;-;-;-;-;-;- + 3366 NaN NaN 298412.3 NaN 8528 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11409 54.045 NaN 439550 35 0 78458 0.261 + 29378 TYQDIQNTI 9 64 548.2694184151188 1094.5242838970375 2 548.2695922851562 MULTI HCD FTMS 0 0 0 11407 154739.578125 0.048079772161102166 22 -0.46410369873046875 2 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 103.82355648334675 0.003950725192926219 2 {[QS]|[NT]}{I|L}EYQNT{I|L} 9 4 + 68.241 0 0 6.2348 6.2348 88.933 0 0 0 4.762036441594191 45.22038431917139 4.762036441594191 9.208187539523749 0 1.305462187404089 0 1.024227503252014 0.6861818737241735 {[QS]|[NT]}{I|L}EYQNT{I|L};{[QS]|[NT]}{I|L}EY[AG]NT{I|L};{[QS]|[NT]}{I|L}EYQGGT{I|L};{[QS]|[NT]}[YE]{I|L}QNT{I|L};{[QS]|[NT]}{I|L}EY[AG]GGT{I|L};{[QS]|[NT]}[YE]{I|L}[AG]NT{I|L};{[QS]|[NT]}[YE]{I|L}QGGT{I|L};{[QS]|[NT]}{I|L}Q[YE]NT{I|L};{[QS]|[NT]}{I|L}Q[YE]GGT{I|L};{[QS]|[NT]}{I|L}[AG][YE]NT{I|L} 6.2348;5.3935;5.3935;5.0681;4.5561;4.2268;4.2268;4.1545;3.3132;3.3132 -;-;-;-;-;-;-;-;-;- 706 NaN NaN 145895.8 NaN 8529 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11410 54.048 NaN 355090 35 0 17817 0.261 -1 YNKCKRKN 8 75 555.7947580549977 1109.5749631767953 2 555.7953491210938 MULTI HCD FTMS 0 0 0 11407 92589.640625 0.9119004442441847 1 -0.026157379150390625 3 Carbamidomethyl (C) _YNKC(Carbamidomethyl (C))KRKN_ ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF;RWDD2B|p.H196Q|1|0.1|ENSG00000156253|chr21:29007898-29007898|A/T|missense_variant 9.347437153973935 0.5250182646323369 2 [YN]D{M(Oxidation (M))|F}G 5 -1 39.111 0 0 3.5249 0 0 0 510.32670813212667 510.32670813212667 8.087797828080188 0 0 0 0 0 2 0.3807196863200844 0.3252574989159953 [YN]D{M(Oxidation (M))|F}G 3.5249 - 307 NaN NaN 134542.8 NaN 8530 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11411 54.051 NaN 109880 35 0 7395 0.261 + 27152 SYNDYVREF 9 46 596.7670535002568 1191.5195540673135 2 596.7675170898438 MULTI HCD FTMS 0 0 0 11407 25033.931640625 0.4625700520429396 1 -0.026157379150390625 4 Unmodified _SYNDYVREF_ ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1 19.625955294349634 0.19079243933902879 2 VYDN[MT] 6 7 32.224 0 0 2.7044 0 0 450.22358901191564 0 450.22358901191564 0 7.530834337684311 0 0 0 0.3807196863200844 0 0 0 VYDN[MT] 2.7044 - 25 NaN NaN 100831.9 NaN 8531 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11412 54.055 NaN 311940 35 0 21172 0.261 -1 FPDRIMNTF 9 67 578.7762597744046 1155.537966615609 2 578.77685546875 MULTI HCD FTMS 0 0 0 11407 49001.984375 0.08384138728778642 30 -0.5953445434570312 5 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 22.65808497894818 0.16459551161911185 2 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4 -1 38.038 0 0 3.2918 0 0 628.3373280255875 0 628.3373280255875 0 27.58085879196409 0 0 0 0.7059771852360797 0 0.4247425010840047 0 {M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 3.2918 + + 45 NaN NaN 136156.8 NaN 8532 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11413 54.058 NaN 196900 35 0 34681 0.261 -1 0 45 593.1555420702344 592.1482656036344 1 593.157958984375 MULTI HCD FTMS 0 0 0 11407 47410.61328125 0.4588904372873299 -85 1.9456138610839844 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 110132.6 NaN 8533 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11414 54.061 NaN 152720 35 0 18809 0.261 + 24325 RYGPIVDVY 9 62 541.2883250146537 1080.5620970961072 2 541.2880859375 MULTI HCD FTMS 0 0 0 11407 28924.072265625 0.5920595446397294 -3 0.07861709594726562 7 Unmodified _RYGPIVDVY_ ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10 13.042465956692817 0.2476723265019929 2 VDVY 4 5 40.745 0 0 3.7708 0 0 586.3227521609537 0 586.3227521609537 0 29.06295947543775 0 0 0 0.8807196863200843 0 0 0 + VDVY 3.7708 + + 37 NaN NaN 107351.7 NaN 8534 2878 11407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11416 54.066 NaN 1286400 35 0 166520 0.327 + 882 AYAIIKEEL 9 77 525.2974650483845 1048.580377163569 2 525.297607421875 MULTI HCD FTMS 0 0 0 11415 729936.25 0.2632710570769203 5 -0.10436248779296875 1 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 107.1870275148908 0.00340162908551068 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 9 0 + 89.236 0 0 8.5101 8.5101 91.103 0 0 0 25.642492736872597 51.0256843593644 25.642492736872597 7.134928107446186 0 2.110924374808178 2 0.3054621874040891 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}VASE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}KEE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}V{[SA]|[TG]}E{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}AS{M(Oxidation (M))|F}{I|L};EE{I|L}K{I|L}AS{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}{I|L}AS{M(Oxidation (M))|F}{I|L};EEK{I|L}{I|L}AS{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}EK{I|L}A{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[QN]|[E{I|L}]|[KN]}[SG]{I|L}{I|L}AS{M(Oxidation (M))|F}{I|L} 8.5101;7.8297;7.1233;6.2951;3.4698;3.181;3.0439;2.7748;2.2558;2.1855 +;-;-;-;-;-;-;-;-;- + 659 NaN NaN 299803.2 NaN 8535 2879 11415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11417 54.071 NaN 537340 35 0 126190 0.261 -1 IMTPDMCI 8 72 498.71316448734547 995.411776041491 2 498.7135314941406 MULTI HCD FTMS 0 0 0 11415 139400.4375 0.7158643748743755 -1 0.026157379150390625 2 Carbamidomethyl (C),Oxidation (M) _IM(Oxidation (M))TPDMC(Carbamidomethyl (C))I_ ENSG00000159625|ENST00000360716|DRC7;nc|ENSG00000159625|Q8IY82-2|DRC7 14.581692164780916 0.48650662947107914 2 {I|L}T 2 -1 23.711 0 0 2.3821 0 0 0 778.2583827562386 778.2583827562386 2.2885152077441617 0 0 0 0 0 0 0.4247425010840047 0 {I|L}T 2.3821 - 84 + NaN NaN 169214.6 NaN 8536 2879 11415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11418 54.074 NaN 243970 35 0 15691 0.261 -1 HAVEWPVVM 9 79 542.2682703559444 1082.5219877786888 2 542.279052734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _HAVEWPVVM(Oxidation (M))_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 16.942295170755138 0.21397866736869717 2 C(Carbamidomethyl (C))TQ{I|L} 4 -1 32.612 0 0 3.0126 0 0 562.3241444318375 0 562.3241444318375 0 11.68218945128244 0 0 0 0 0 0.6694451763165201 0 C(Carbamidomethyl (C))TQ{I|L} 3.0126 - 394 NaN NaN 139050.8 NaN 8537 2879 11415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11419 54.078 NaN 129310 35 0 10737 0.261 + 6374 FPGEAERVAF 10 48 561.7830951444712 1121.5516373557423 2 561.7859497070312 MULTI HCD FTMS 0 0 0 11415 31609.458984375 0.1960028483798465 -20 0.4870643615722656 4 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 12.872603262515298 0.3907060291096084 2 WPE 3 8 29.693 0 0 2.6475 0 0 691.3682502859716 0 691.3682502859716 0 3.7236374744834677 0 0 0 0.3494850021680094 0 0 0 WPE 2.6475 - 12 NaN NaN 102970 NaN 8538 2879 11415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11420 54.081 NaN 51650 35 0 4561.2 0.261 -1 0 49 483.0934810300553 NaN 0 482.7236022949219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 V 1 -1 5.4846 0 0 0.56883 0 0 613.026456833745 249.05413232974846 862.0805891634934 0 0 0 0 0 0 0 0 0 V 0.56883 - 5 + NaN NaN 87302.4 NaN 8539 2879 11415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11422 54.086 NaN 861550 35 0 113780 0.327 + 34300 YPDSHLPTL 9 80 521.7638635348422 1041.5131741364844 2 521.7638549804688 MULTI HCD FTMS 0 0 0 11421 367350.03125 0.7220158238839733 -4 0.09481048583984375 1 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 156.15588289589118 2.3186882095317417E-06 2 YPD[HS]{I|L}PT{I|L} 9 0 + 90.13 0 0 8.6537 8.6537 95.211 0 0 0 15.510299956639813 15.510299956639813 15.510299956639813 15.510299956639813 0 2.548455006504028 1.3979400086720375 1.8781446971601312 0 + + YPD[HS]{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};[DP]Y[HS]{I|L}PT{I|L};[YT]ERYPT{I|L};YTERYPT{I|L};YPDA[NG]{I|L}P[VP];Y{[RE]|[WV]}TYPT{I|L};[TP]{I|L}{I|L}[HS]DPY;[YT]ERTPY{I|L};[DP][QP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PT{I|L} 8.6537;7.1645;5.0041;4.6919;4.5841;3.5818;3.0602;2.4885;2.3423;2.129 +;+;-;-;-;-;-;-;-;- + 645 + NaN NaN 220040 NaN 8540 2880 11421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11423 54.09 NaN 1402200 35 0 97634 0.261 + 28348 TPDEIDHVF 9 91 536.7508092441368 1071.4870655550735 2 536.7509765625 MULTI HCD FTMS 0 0 0 11421 464830.5 0.18120425482398358 -6 0.16045379638671875 2 Unmodified _TPDEIDHVF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 180.00974506902125 1.0762292318080308E-12 2 TPDE{I|L}DHV{M(Oxidation (M))|F} 9 0 + 102.17 0 0 9.5356 9.5356 91.458 0 0 0 5.55970632012567 5.55970632012567 5.55970632012567 5.55970632012567 0 3.110924374808178 1.2218487496163564 1.2346368802282015 0 + + TPDE{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}DHV{M(Oxidation (M))|F};[DP]TE{I|L}DHV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT{I|L}DHV{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}PE{I|L}DHV{M(Oxidation (M))|F};[DP]ET{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}{[WN]|[YH]}PT;[TP]DE[YT]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[DP]TE{I|L}{[WN]|[YH]}PT;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT{I|L}{[WN]|[YH]}PT 9.5356;9.0167;6.9592;6.9049;6.7948;6.136;4.5943;3.3796;2.5368;2.4825 +;+;-;-;-;-;-;-;-;- + 1247 + NaN NaN 316714.3 NaN 8541 2880 11421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11424 54.094 NaN 314330 35 0 16292 0.261 + 19912 NYFLSPEKL 9 74 555.7947580549977 1109.5749631767953 2 555.7938232421875 MULTI HCD FTMS 0 0 0 11421 83888.125 0.8262006196150704 3 -0.055332183837890625 3 Unmodified _NYFLSPEKL_ ENSG00000118369|ENST00000529308|USP35;nc|ENSG00000118369|Q9P2H5-2|USP35;USP35|p.L831Pfs*16|1|0.13|ENSG00000118369|chr11:78210341-78210342|-/C|frameshift_variant 15.847184025352803 0.2234401846867398 2 D{M(Oxidation (M))|F}GMSY{I|L} 7 7 28.249 0 0 2.5459 0 0 278.21646056810454 0 278.21646056810454 0 -4.854771935913998 -4.854771935913998 0 0 0.3054621874040891 0 0 0 D{M(Oxidation (M))|F}GMSY{I|L} 2.5459 - 300 + NaN NaN 151729.7 NaN 8542 2880 11421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11425 54.097 NaN 303380 35 0 49140 0.261 + 10248 IILYSKSSF 9 59 529.2994876996075 NaN 0 529.28173828125 PEAK HCD FTMS 0 0 0 11421 9056.9697265625 1 0 0 4 Unmodified _IILYSKSSF_ REV__ENSG00000090612|ENST00000536435|ZNF268;REV__ENST00000536899.6_1_12:133758152-133781113:+|nuORF;REV__nc|ENSG00000090612|Q14587-2|ZNF268 12.531546534597751 0.23452071659215576 2 PV{M(Oxidation (M))|F} 3 -1 16.198 0 0 1.533 0 0 165.1122913903062 545.2526339166624 710.3649253069686 0 0 0 0 0 0 0 0 0 PV{M(Oxidation (M))|F} 1.533 - 98 + NaN NaN 138136.5 NaN 8543 2880 11421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11427 54.102 NaN 4003800 35 0 669490 0.327 + 661 APLEDEATL 9 92 479.73994085724706 957.4653287812941 2 479.74017333984375 MULTI HCD FTMS 0 0 0 11426 3364756.5 0.9170924539020372 2 -0.0390625 1 Unmodified _APLEDEATL_ ENSG00000149806|ENST00000529639|FAU 139.54400939418784 2.61670173137287E-05 2 [PA]{I|L}EDEAT{I|L} 9 0 + 95.352 0 0 9.9588 9.9588 93.062 0 0 0 11.545612717470206 16.478174818886373 11.545612717470206 8.57840941039747 0 1.7059771852360797 1.6989700043360187 1.2708865128625189 0 + + [PA]{I|L}EDEAT{I|L};[PA]{I|L}DEEAT{I|L};{[QN]|[E{I|L}]|[KN]}PADEAT{I|L};[{I|L}P]AEDEAT{I|L};[{I|L}P]EADEAT{I|L};{[QN]|[E{I|L}]|[KN]}PGEEAT{I|L};{[QN]|[E{I|L}]|[KN]}PDAEAT{I|L};[{I|L}P]ADEEAT{I|L};[PA]{I|L}EDE[{I|L}T]A;[{I|L}P]EGEEAT{I|L} 9.9588;9.0628;8.7529;8.4473;8.2381;7.857;7.7265;7.5514;7.395;7.3422 +;-;-;-;-;-;-;-;-;- + 2145 NaN NaN 521134.2 NaN 8544 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11428 54.107 NaN 1150300 35 0 277860 0.261 + 587 APFFPDCAL 9 81 490.73105151461414 979.4475500960283 2 490.731201171875 MULTI HCD FTMS 0 0 0 11426 770364.875 0.9888753669320577 2 -0.0390625 2 Unmodified _APFFPDCAL_ ENSG00000182103|ENST00000329203|FAM181B 44.40701690623563 0.04511410083598184 2 AP{I|L}EDDE 7 6 75.31 0 0 7.689 0 0 0 207.11387048892814 207.11387048892814 31.699243915188184 0 0 0 0 1.742992819099939 1.6989700043360187 1.1549471895720984 0 AP{I|L}EDDE 7.689 - 432 + NaN NaN 272370.7 NaN 8545 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11429 54.11 NaN 1218000 35 0 93395 0.261 + -1 ICMNSHCF 8 92 506.1955923376212 1010.3766317420424 2 506.1957702636719 MULTI HCD FTMS 0 0 0 11426 578456.1875 1 0 0 3 Carbamidomethyl (C) _ICMNSHC(Carbamidomethyl (C))F_ REV__ENSG00000166342|ENST00000327305|NETO1;REV__ENSG00000171208|ENST00000562435|NETO2;REV__nc|ENSG00000166342|Q8TDF5-2|NETO1;REV__nc|ENSG00000171208|Q8NC67-3|NETO2 9.347437153973935 0.5250182646323369 2 EAT{I|L} 4 -1 32.925 0 0 3.2587 0 0 578.1548253875281 0 578.1548253875281 0 7.862978472840609 0 0 0 1.079689690656103 0 0.2742275032520141 0 EAT{I|L} 3.2587 - 239 NaN NaN 273379.9 NaN 8546 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11430 54.113 NaN 565010 35 0 97582 0.261 -1 0 73 553.5863473585449 1657.7372126758346 3 553.5870361328125 MULTI HCD FTMS 0 0 0 11426 133611.28125 0.9516758983810277 -1 0.016269683837890625 4 NaN NaN 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.1836 0 0 1232.505958506948 0 1232.505958506948 0 4.471580313422194 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1836 - 132 NaN NaN 177094.8 NaN 8547 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11431 54.117 NaN 237560 35 0 19853 0.261 -1 VPAEELVEM 9 63 516.7494598378261 1031.484366742452 2 516.748046875 MULTI HCD FTMS 0 0 0 11426 30517.525390625 0.5636496669392872 3 -0.06857681274414062 5 Oxidation (M) _VPAEELVEM(Oxidation (M))_ ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12 20.453626601364224 0.18364154288633264 2 VE{M(Oxidation (M))|F} 3 -1 43.188 0 0 4.1869 0 0 638.3276722617865 0 638.3276722617865 0 22.21848749616356 0 0 0 1.5 0 0.5 0 VE{M(Oxidation (M))|F} 4.1869 + + 35 + NaN NaN 142762.1 NaN 8548 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11432 54.12 NaN 269470 35 0 68006 0.261 + 3516 EIEEKNTL 8 51 488.25269536740575 974.4908378016115 2 488.25323486328125 MULTI HCD FTMS 0 0 0 11426 29857.1015625 0.47504349458757844 2 -0.0390625 6 Unmodified _EIEEKNTL_ REV__tr|U7SJA1|U7SJA1_FUSNUXyloseisomerase-likeTIMbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02159PE=4SV=1 11.640296217721598 0.50814828952472 2 WQ{I|L} 3 -1 19.922 0 0 2.0443 0 0 529.2374745099625 0 529.2374745099625 0 4.704999916446798 0 0 0 0 0 0 0.5 WQ{I|L} 2.0443 - 54 NaN NaN 138699.7 NaN 8549 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11433 54.123 NaN 654980 35 0 108280 0.261 + 33586 YIQDAQKRL 9 81 567.8169016584304 1133.6192503836608 2 567.8174438476562 MULTI HCD FTMS 0 0 0 11426 60021.61328125 0.5338074054948746 7 -0.19286346435546875 7 Unmodified _YIQDAQKRL_ ENSG00000196547|ENST00000559717|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2 19.256988751693697 0.19398022840297344 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L} 8 5 62.402 0 0 5.5047 0 0 0 143.07357102258575 143.07357102258575 22.246687923431097 0 0 0 0 0 2 1.329689690656103 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L} 5.5047 - 613 NaN NaN 192102.6 NaN 8550 2881 11426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11435 54.128 NaN 178550 35 0 39748 0.327 + -1 VIVMGEEEMM 10 59 600.2528403585453 1198.4911277838905 2 600.2528076171875 MULTI HCD FTMS 0 0 0 11434 117590.9609375 0.9744756679269156 6 -0.16671371459960938 1 2 Oxidation (M) _VIVM(Oxidation (M))GEEEMM(Oxidation (M))_ REV__ENSG00000176783|ENST00000319449|RUFY1;REV__nc|ENSG00000176783|Q96T51-2|RUFY1;REV__nc|ENSG00000176783|Q96T51-3|RUFY1 10.823927491677226 0.4098686510432541 2 [{I|L}V]{I|L}DE 5 -1 55.445 0 0 4.6263 0 0 0 626.1653536432249 626.1653536432249 30.981362441963327 0 0 0 0 1.4247425010840047 1.6989700043360187 0.3494850021680094 0 [{I|L}V]{I|L}DE 4.6263 - 31 + NaN NaN 117461.5 NaN 8551 2882 11434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11436 54.133 NaN 177960 35 0 19556 0.262 + 1516 AYVGNLPRI 9 61 501.79020797692584 1001.5658630206517 2 501.79071044921875 MULTI HCD FTMS 0 0 0 11434 69753.5546875 0.10862806196778856 20 -0.39440155029296875 2 Unmodified _AYVGNLPRI_ ENSG00000058056|ENST00000263966|USP13;nc|ENSG00000058056|Q92995-2|USP13;USP13-PEX5L|1|fusion 20.453626601364224 0.18364154288633264 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}[PA]{I|L} 9 3 + 40.634 0 0 4.057 4.057 89.937 0 0 0 1.420817617632082 34.179987112256214 1.420817617632082 40.63363730737706 0 1.75 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VQQ{I|L}[PA]{I|L} 4.057 - 61 NaN NaN 120995.7 NaN 8552 2882 11434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11437 54.136 NaN 63904 35 0 4978.6 0.261 + 26709 SYCRGLFYW 9 37 597.7736380194214 1193.5327231056426 2 597.7744140625 MULTI HCD FTMS 0 0 0 11434 13207.18359375 0.2289795661290235 22 -0.4296417236328125 3 Unmodified _SYCRGLFYW_ REV__ENSG00000147050|ENST00000611820|KDM6A;REV__ENSG00000183878|ENST00000545955|UTY;REV__KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;REV__KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;REV__nc|ENSG00000147050|O15550|KDM6A;REV__nc|ENSG00000183878|O14607-2|UTY;REV__nc|ENSG00000183878|O14607-3|UTY;REV__nc|ENSG00000183878|O14607-4|UTY;REV__nc|ENSG00000183878|O14607-5|UTY;REV__nc|ENSG00000183878|O14607|UTY 2.0597508629832335 0.3354026079994024 2 {[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}V{[QV]|[N{I|L}]|[RA]|[KV]}S[{M(Oxidation (M))|F}T] 10 -1 + 12.165 0 0 1.0192 1.0192 82.371 0 0 0 1.7069622716897452 6.532125137753436 1.7069622716897452 6.532125137753436 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}V{[QV]|[N{I|L}]|[RA]|[KV]}S[{M(Oxidation (M))|F}T];{[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}V[WQ][{M(Oxidation (M))|F}T];{[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}V{[{M(Oxidation (M))|F}H]|[RQ]}{[YD]|[{M(Oxidation (M))|F}M]} 1.0192;0.47191;0.21969 -;-;- 17 NaN NaN 106796.4 NaN 8553 2882 11434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11439 54.141 NaN 435810 35 0 34405 0.327 + 18779 NADAIVVKL 9 73 471.7845954936088 941.5546380540176 2 471.7845458984375 MULTI HCD FTMS 0 0 0 11438 112452.890625 0.12750208074900587 9 -0.24816131591796875 1 Unmodified _NADAIVVKL_ ENSG00000197157|ENST00000354725|SND1 59.05245873256422 0.018907022117377846 2 {[QG]|[NA]}DA{I|L}VVK{I|L} 9 0 + 89.261 0 0 9.4802 9.4802 98.893 0 0 0 15.043645482401018 15.043645482401018 15.043645482401018 73.358440551387 0 2.5451140161145327 1.6989700043360187 0 0.4247425010840047 + + {[QG]|[NA]}DA{I|L}VVK{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}K{I|L} 9.4802;1.689 +;- + 227 NaN NaN 172038.3 NaN 8554 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11440 54.146 NaN 301870 35 0 33413 0.261 + 8348 GYIERPQLI 9 66 544.8085408954453 1087.6025288576905 2 544.80859375 MULTI HCD FTMS 0 0 0 11438 111695.84375 0.2054514132782745 8 -0.23873519897460938 2 Unmodified _GYIERPQLI_ ENSG00000164329|ENST00000453514|TENT2;nc|ENSG00000164329|Q6PIY7-2|TENT2 45.739877483867886 0.03899552410870734 2 [YG]{I|L}ERPQ{I|L}{I|L} 9 0 + 82.277 0 0 7.565 7.565 91.285 0 0 0 18.782672239435314 16.478174818886373 16.478174818886373 9.208187539523749 0 2.2134679910804405 2 0 0 + + [YG]{I|L}ERPQ{I|L}{I|L};[YG]{I|L}ERP[AG]{I|L}{I|L};[YG]{I|L}ER{I|L}{I|L}[QP];[YT][TP]RPQ{I|L}{I|L};[YT][TP]RP[AG]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]RPQ{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}REP{[MS]|[{M(Oxidation (M))|F}A]};{[QN]|[E{I|L}]|[KN]}[YG][VG]PQ{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YG]RP[AG]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AAA{[QN]|[E{I|L}]|[KN]}Q{I|L}{I|L} 7.565;6.7184;4.9053;4.0442;3.1975;2.8058;2.168;1.9592;1.9592;1.4278 +;-;-;-;-;-;-;-;-;- + 276 NaN NaN 141873.8 NaN 8555 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11441 54.149 NaN 332470 35 0 36210 0.261 + 18339 MPHDLITQL 9 78 542.2785510482393 1082.5425491632784 2 542.2774658203125 MULTI HCD FTMS 0 0 0 11438 120684.3203125 0.5718279720827473 -3 0.055332183837890625 3 Oxidation (M) _M(Oxidation (M))PHDLITQL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 43.85829265575387 0.04763305254408404 2 {[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L} 9 5 + 49.235 0 0 4.5481 4.5481 82.949 0 0 0 0.9151498112134959 33.178395805266774 0.9151498112134959 3.0102999566398125 0 0.9247425010840047 0 0.7134679910804405 0 {[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L};{[QN]|[E{I|L}]|[KN]}G[Y{M(Oxidation (M))|F}]{I|L}TQ{I|L};{[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}HV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TQ{I|L};{[QN]|[E{I|L}]|[KN]}G[Y{M(Oxidation (M))|F}]{I|L}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}HV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L}{[YC]|[HE]}DP{I|L};{[QN]|[E{I|L}]|[KN]}HV[{I|L}A]C(Carbamidomethyl (C))E{I|L};{[QN]|[E{I|L}]|[KN]}HV[{I|L}A][CG]E{I|L};{[QN]|[E{I|L}]|[KN]}HV[KP]DV{M(Oxidation (M))|F} 4.5481;4.2701;3.6975;3.689;3.4194;2.8384;2.7688;2.0006;1.15;0.856 -;-;-;-;-;-;-;-;-;- 493 NaN NaN 142223.4 NaN 8556 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11442 54.152 NaN 197370 35 0 22982 0.261 + 6375 FPGEAERVAF 10 57 561.7830951444712 1121.5516373557423 2 561.7828979492188 MULTI HCD FTMS 0 0 0 11438 75678.53125 0.46926483915892037 -16 0.3957672119140625 4 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 35.61225514009592 0.18348312004207498 2 AEGPE 5 8 46.682 0 0 4.1623 0 0 620.3300648419937 0 620.3300648419937 0 22.870156338638594 0 0 0 0.9247425010840047 0 0.4247425010840047 0 AEGPE 4.1623 - 47 NaN NaN 111129.2 NaN 8557 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11443 54.156 NaN 226560 35 0 24517 0.261 + 10361 ILYRPIQKL 9 64 572.3659663502481 1142.717379767296 2 572.366455078125 MULTI HCD FTMS 0 0 0 11438 84587.25 0.4495605610588189 12 -0.2994041442871094 5 Unmodified _ILYRPIQKL_ REV__ENSG00000162688|ENST00000361915|AGL;REV__nc|ENSG00000162688|P35573-2|AGL;REV__nc|ENSG00000162688|P35573-3|AGL 19.256988751693697 0.19398022840297344 2 SW 2 -1 24.222 0 0 2.1197 0 0 851.5960246420992 0 851.5960246420992 0 4.651982571351937 0 0 0 0 0 0.3252574989159953 0 SW 2.1197 - 127 + NaN NaN 123998.3 NaN 8558 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11444 54.159 NaN 147510 35 0 13452 0.261 + 24109 RYALQMEQL 9 52 576.297401729668 1150.5802505261358 2 576.2974853515625 MULTI HCD FTMS 0 0 0 11438 47833.9609375 0.2580262197162766 4 -0.1276092529296875 6 Unmodified _RYALQMEQL_ ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF 38.61474834105838 0.07170385841135779 2 {I|L}QMEQ{I|L} 6 3 55.438 0 0 4.8183 0 0 390.2001209943375 0 390.2001209943375 0 42.250547101681875 0 0 0 1.579689690656103 0 0 0 + {I|L}QMEQ{I|L} 4.8183 + + 210 NaN NaN 112909.2 NaN 8559 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11445 54.162 NaN 196460 35 0 27957 0.261 -1 LPDMVVSHL 9 49 513.768193570899 NaN 0 513.768798828125 PEAK HCD FTMS 0 0 0 11438 38916.05859375 0.03175317046252173 69 -1.5975685119628906 7 Oxidation (M) _LPDM(Oxidation (M))VVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 19.256988751693697 0.19238547928067054 2 P 1 -1 11.237 0 0 1.0957 0 0 113.08554690572073 812.3615816705686 925.4471285762894 0 0 0 0 0 0.4247425010840047 0 0 0 P 1.0957 + + 18 + NaN NaN 122450.2 NaN 8560 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11446 54.166 NaN 248270 35 0 12183 0.261 + -1 VVLMCTSYVAV 11 40 621.319743487383 NaN 0 621.2384033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _VVLMC(Carbamidomethyl (C))TSYVAV_ REV__ENSG00000034693|ENST00000367591|PEX3 1.3295316138638542 0.3383486451652214 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 144242.2 NaN 8561 2883 11438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11448 54.171 NaN 2498600 35 0 214140 0.327 + 9764 HYILHNSFF 9 109 589.2930776435726 1176.571602353945 2 589.2932739257812 MULTI HCD FTMS 0 0 0 11447 1348877.25 0.9196385062252546 -1 0.029514312744140625 1 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 198.2503983107462 1.949454451977364E-17 2 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 104.98 0 0 8.9222 8.9222 89.459 0 0 0 1.7779670544625645 1.7779670544625645 1.7779670544625645 1.7779670544625645 0 2.385151878060192 1.5228787452803376 0.9247425010840047 0.5044321917401079 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVN[{I|L}T]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}[NS]{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 8.9222;8.7711;8.1396;7.6221;6.9032;6.8957;6.8179;6.6529;6.3034;5.6382 +;+;-;-;-;-;-;-;-;- + 3772 NaN NaN 478043.6 NaN 8562 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11449 54.175 NaN 336060 35 0 45791 0.263 + 663 APLEPESPT 9 67 470.7344918062236 939.4544306792473 2 470.7345275878906 MULTI HCD FTMS 0 0 0 11447 76551.234375 0.5820961277188038 1 -0.039073944091796875 2 Unmodified _APLEPESPT_ REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF 42.09456458481378 0.05572955244001856 2 AP{I|L}EDEA[VP] 9 -1 + 84.739 0 0 9.02 9.02 97.199 0 0 0 61.77977691042015 4.137342758552691 4.137342758552691 32.13635747450196 0 1.5941876774005248 1.5228787452803376 1.0994850021680094 0 AP{I|L}EDEA[VP];[PA]{I|L}EDD[PA]{I|L};[PA]{I|L}DED[PA]{I|L};[PA]{I|L}EDD[{I|L}P]A;{I|L}PAEDEA[VP];[PA]{I|L}DED[{I|L}P]A;[{I|L}P]AEDD[PA]{I|L};[{I|L}P]ADED[PA]{I|L};[{I|L}P]AEDD[{I|L}P]A;[{I|L}P]ADED[{I|L}P]A 9.02;5.5992;5.4058;5.1756;5.0812;4.9822;2.9381;2.7447;2.5145;2.3211 -;-;-;-;-;-;-;-;-;- 307 + NaN NaN 138576.9 NaN 8563 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11450 54.179 NaN 480040 35 0 109660 0.261 + 35079 YTVLTHLKN 9 79 544.8085408954453 1087.6025288576905 2 545.7991943359375 MULTI HCD FTMS 0 0 0 11447 16473.162109375 0.16397057982991287 9 -0.24445724487304688 3 Unmodified _YTVLTHLKN_ REV__ENST00000431058.1_1_7:54724196-54724400:+|nuORF 7.910154910731844 0.2910521888787154 2 [YT]V 3 -1 30.7 0 0 2.8227 0 0 0 721.4008716339647 721.4008716339647 14.457640437841874 0 0 0 0 0 1.6989700043360187 0.3252574989159953 0 [YT]V 2.8227 + + 243 NaN NaN 155123.8 NaN 8564 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11451 54.182 NaN 756360 35 0 167640 0.261 + 24073 RYAEAVQLL 9 69 531.8009984074675 1061.587443881735 2 531.8009033203125 MULTI HCD FTMS 0 0 0 11447 201629.453125 0.25893251289015595 -4 0.08484649658203125 4 Unmodified _RYAEAVQLL_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 28.494509381512117 0.11816142465008336 2 QV{[CP]|[EA]}C(Carbamidomethyl (C))V{I|L} 7 5 49.742 0 0 4.6856 0 0 244.1784382550797 0 244.1784382550797 0 34.847141774252464 0 0 0 1.8494850021680094 0 0 0.7302046884880937 QV{[CP]|[EA]}C(Carbamidomethyl (C))V{I|L} 4.6856 - 417 NaN NaN 211362.9 NaN 8565 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11452 54.185 NaN 386300 35 0 67670 0.261 + 34898 YSGPEGSYF 9 62 503.71019254486725 1005.4058321565345 2 503.7104797363281 MULTI HCD FTMS 0 0 0 11447 42276.14453125 0.5743699954146747 2 -0.06195068359375 5 Unmodified _YSGPEGSYF_ ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;nc|ENSG00000138448|P06756-2|ITGAV 11.640296217721598 0.25978676193971967 2 {[{M(Oxidation (M))|F}C]|[YS]}AC(Carbamidomethyl (C))C(Carbamidomethyl (C))KA{M(Oxidation (M))|F} 8 6 {[{M(Oxidation (M))|F}C]|[YS]} + + 24.499 2.2185 0.88705 2.4368 2.4368 59.864 0 0 0 0 13.702519733105163 0 0 0 1.055462187404089 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}AC(Carbamidomethyl (C))C(Carbamidomethyl (C))KA{M(Oxidation (M))|F} 2.4368 - 154 + NaN NaN 146383.6 NaN 8566 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11453 54.189 NaN 163490 35 0 22235 0.261 -1 RFDEAYIYM 9 43 612.2740309352452 1222.5335089372902 2 612.2734985351562 MULTI HCD FTMS 0 0 0 11447 56058.57421875 0.5232989351039812 8 -0.21864700317382812 6 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ ENSG00000011295|ENST00000261647|TTC19;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF 12.240655878213236 0.2545997876781172 2 P{I|L}Y{M(Oxidation (M))|F} 4 -1 37.713 0 0 3.0848 0 0 684.300096580275 0 684.300096580275 0 37.71271006008984 0 0 0 1 0 0 0 P{I|L}Y{M(Oxidation (M))|F} 3.0848 - 22 NaN NaN 114871.1 NaN 8567 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11454 54.198 NaN 145280 35 0 13063 0.261 -1 LYANMFERL 9 49 586.7918884742262 1171.5692240152523 2 586.7920532226562 MULTI HCD FTMS 0 0 0 11447 72930.875 0.22635388455737346 12 -0.28922271728515625 7 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 17.11289562659939 0.2125047172822487 2 A 1 -1 11.237 0 0 0.95915 0 0 276.148557244026 821.3632181208106 1097.5117753648367 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.95915 + + 25 + NaN NaN 106239.4 NaN 8568 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11455 54.202 NaN 418340 35 0 181370 0.261 + 27913 TEHEKYLV 8 48 509.764033487205 1017.51351404121 2 509.7637023925781 MULTI HCD FTMS 0 0 0 11447 84052.2890625 0.21852695508091802 -3 0.06857681274414062 8 Unmodified _TEHEKYLV_ ENSG00000137513|ENST00000281038|NARS2;nc|ENSG00000137513|Q96I59-2|NARS2 11.640296217721598 0.50814828952472 2 MYV{I|L} 4 7 37.423 0 0 3.6779 0 0 493.23945815254064 0 493.23945815254064 0 37.422750325201406 0 0 0 1 0 0 0 MYV{I|L} 3.6779 - 44 NaN NaN 149545 NaN 8569 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11456 54.205 NaN 261580 35 0 19716 0.261 -1 VPAEELVEM 9 70 516.7494598378261 1031.484366742452 2 516.7493896484375 MULTI HCD FTMS 0 0 0 11447 25789.6328125 0.47632688952288715 6 -0.17654800415039062 9 Oxidation (M) _VPAEELVEM(Oxidation (M))_ ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12 25.399314129420986 0.14091189997036632 2 VE{M(Oxidation (M))|F} 3 -1 40.93 0 0 3.9681 0 0 638.3280689903021 0 638.3280689903021 0 25.779550148593483 0 0 0 1.5 0 0.4247425010840047 0 VE{M(Oxidation (M))|F} 3.9681 + + 114 + NaN NaN 142508.3 NaN 8570 2884 11447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11458 54.21 NaN 969860 35 0 114810 0.327 + 26695 SYAPPTDSF 9 77 492.7189982409705 983.423443548741 2 492.7191467285156 MULTI HCD FTMS 0 0 0 11457 467431.34375 0.964243239265626 2 -0.05902099609375 1 Unmodified _SYAPPTDSF_ ENSG00000118515|ENST00000367858|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 172.90653553480564 2.2447970467336844E-09 2 {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F} 9 0 + 104.1 0 0 10.585 10.585 92.271 0 0 0 15.78173176314671 84.88691973627233 15.78173176314671 5.981362441963327 0 3.0669015600442577 1.154901959985743 1.5044321917401078 0 + + {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}APPESS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}APEPSS{M(Oxidation (M))|F};{[CA]|SS}{M(Oxidation (M))|F}PPTDS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPPTDS{M(Oxidation (M))|F};{[CA]|SS}{M(Oxidation (M))|F}PPESS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPPESS{M(Oxidation (M))|F};{[CA]|SS}{M(Oxidation (M))|F}PEPSS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPEPSS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AAPTDS{M(Oxidation (M))|F} 10.585;9.9768;9.5896;8.3127;8.1052;7.7045;7.4969;7.3174;7.1098;5.8166 +;-;-;-;-;-;-;-;-;- + 890 NaN NaN 237116.2 NaN 8571 2885 11457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11459 54.214 NaN 615250 35 0 88875 0.261 + 17955 MITDLEERL 9 78 568.2867272456716 1134.5589015581431 2 568.2869262695312 MULTI HCD FTMS 0 0 0 11457 281940.96875 0.24965308554356516 14 -0.2856788635253906 2 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 93.93812099017352 0.0044227730261779084 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 106.16 0 0 9.3573 9.3573 90.458 0 0 0 19.66113029490927 86.49797211252192 19.66113029490927 3.221740651475642 0 2 2 1.4559771852360797 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ER{I|L}E;{M(Oxidation (M))|F}{I|L}TD{I|L}EER{I|L} 9.3573;9.0733;8.3358;7.397 -;+;-;+ + 534 NaN NaN 181193.4 NaN 8572 2885 11457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11460 54.218 NaN 732500 35 0 128700 0.261 + 29379 TYQDIQNTI 9 81 548.2694184151188 1094.5242838970375 2 548.2689819335938 MULTI HCD FTMS 0 0 0 11457 86943.90625 0.0270146994967208 29 -0.5627632141113281 3 Unmodified _TYQDIQNTI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 51.41523569358685 0.02959097413485123 2 [YT]Q{NN|[MP]|[D{I|L}]|[EV]}QNT{I|L} 9 0 + 56.07 0 0 5.1228 5.1228 87.122 0 0 0 13.301181751546615 13.372505457509973 13.301181751546615 9.208187539523749 0 1.305462187404089 2 0.6694451763165201 0 + + [YT]Q{NN|[MP]|[D{I|L}]|[EV]}QNT{I|L};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}[AG]NT{I|L};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}QGGT{I|L};[YT][AG]{NN|[MP]|[D{I|L}]|[EV]}QNT{I|L};{[QS]|[NT]}{I|L}[YE]QNT{I|L};{[QS]|[NT]}{I|L}[YE][AG]NT{I|L};{[QS]|[NT]}{I|L}[YE]QGGT{I|L};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}[{I|L}T]E{I|L};[YT]Q{NN|[MP]|[D{I|L}]|[EV]}AK{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[QS]|[NT]}{I|L}Q[YE]NT{I|L} 5.1228;4.2815;4.2815;4.2815;3.9076;3.0663;3.0663;2.8765;2.6749;2.667 +;-;-;-;-;-;-;-;-;- + 747 NaN NaN 196391.7 NaN 8573 2885 11457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11461 54.221 NaN 187850 35 0 12131 0.261 -1 YNKCKRKN 8 62 555.7947580549977 1109.5749631767953 2 555.7960815429688 MULTI HCD FTMS 0 0 0 11457 20496.205078125 0.20186381964437075 8 -0.20538330078125 4 Carbamidomethyl (C) _YNKC(Carbamidomethyl (C))KRKN_ ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF;RWDD2B|p.H196Q|1|0.1|ENSG00000156253|chr21:29007898-29007898|A/T|missense_variant 5.230669730166228 0.5342319408533849 2 QS{I|L}HMS[Y{I|L}] 8 -1 26.892 0 0 2.4236 0 0 132.10088287951254 0 132.10088287951254 0 2.9393599957600003 0 0 0 0 0 0.3807196863200844 0 QS{I|L}HMS[Y{I|L}] 2.4236 - 187 + NaN NaN 113067.1 NaN 8574 2885 11457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11462 54.224 NaN 112050 35 0 14011 0.262 + 29992 VFKEIKSI 8 52 482.2970518583675 NaN 0 482.2968444824219 PEAK HCD FTMS 0 0 0 11457 30413.873046875 1 0 0 5 Unmodified _VFKEIKSI_ REV__tr|U7SFP2|U7SFP2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02367PE=4SV=1 13.90604991867851 0.38822285293237185 2 D 1 -1 10.242 0 0 1.064 0 0 131.0954907659746 713.4206637018186 844.5161544677933 0 0 0 0 0 0.3252574989159953 0 0 0 D 1.064 - 7 + NaN NaN 111645.9 NaN 8575 2885 11457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11463 54.228 NaN 70535 35 0 4292.7 0.261 + 31263 VVVRLVVLVPL 11 34 603.4215698242188 NaN 0 603.4215698242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VVVRLVVLVPL_ ENST00000592274.1_1_19:3611803-3612905:+|nuORF;nc|ENSG00000226800|Q8N1I8|CACTIN-AS1 0 0.34212014346876374 2 {I|L} 1 10 3.9794 0 0 0.33029 0 0 620.5289166974625 468.2009371393188 1088.7298538367813 0 0 0 0 0 0 0 0 0 + {I|L} 0.33029 + + 1 + NaN NaN 94446.7 NaN 8576 2885 11457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11465 54.233 NaN 4049100 35 0 334100 0.327 + 28349 TPDEIDHVF 9 112 536.7508092441368 1071.4870655550735 2 536.7511596679688 MULTI HCD FTMS 0 0 0 11464 2565229.5 1 0 0 1 Unmodified _TPDEIDHVF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 225.63253280303684 3.884279688775432E-24 2 TPDE{I|L}DHV{M(Oxidation (M))|F} 9 0 + 111.51 0 0 10.407 10.407 96.375 0 0 0 14.020111022512452 14.020111022512452 14.020111022512452 14.020111022512452 0 2.805462187404089 1.3979400086720375 1.6906140654642812 0 + + TPDE{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}DHV{M(Oxidation (M))|F};[DP]TE{I|L}DHV{M(Oxidation (M))|F};[TP]DE[HD]{I|L}V{M(Oxidation (M))|F};[DP]ET{I|L}DHV{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}PE{I|L}DHV{M(Oxidation (M))|F};[PS]EE{I|L}DHV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT{I|L}DHV{M(Oxidation (M))|F};[DP]TE[HD]{I|L}V{M(Oxidation (M))|F};[TP]DE[HD]V{I|L}{M(Oxidation (M))|F} 10.407;9.0989;7.4669;7.3239;6.6301;6.3807;6.1622;5.8873;5.6919;5.6405 +;+;-;-;-;-;-;-;-;- + 5305 + NaN NaN 701622.2 NaN 8577 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11466 54.237 NaN 918610 35 0 121690 0.261 + 34301 YPDSHLPTL 9 93 521.7638635348422 1041.5131741364844 2 521.7637939453125 MULTI HCD FTMS 0 0 0 11464 453230.375 0.8908111468001058 2 -0.062335968017578125 2 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 141.82661023413823 1.746659319327287E-05 2 YPD[HS]{I|L}PT{I|L} 9 0 + 84.927 0 0 8.1542 8.1542 93.596 0 0 0 13.472462915047771 11.650129845764113 11.650129845764113 11.650129845764113 0 2.504432191740108 1.2218487496163564 1.6571406706489746 0 + + YPD[HS]{I|L}PT{I|L};YPD[HS]{I|L}{I|L}[TP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};[DP]Y[HS]{I|L}PT{I|L};[DP][HS]Y{I|L}PT{I|L};[YT]{[RE]|[WV]}YPT{I|L};[DP][HS]{I|L}YPT{I|L};[TP]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YE]Y;[YT]{[RE]|[WV]}TPY{I|L};Y[{I|L}A][YR]DE{I|L} 8.1542;7.0356;6.8606;5.2074;4.2447;4.18;2.9409;2.0753;1.9897;1.9352 +;-;+;-;-;-;-;-;-;- + 648 + NaN NaN 233552.5 NaN 8578 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11467 54.241 NaN 2591100 35 0 191840 0.261 + 6218 FPEQIAEKL 9 120 537.7948942668613 1073.5752356005225 2 537.7947998046875 MULTI HCD FTMS 0 0 0 11464 427387.21875 0.9095694599303078 -4 0.10437774658203125 3 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 59.012897905743536 0.018962365004886385 2 {M(Oxidation (M))|F}PEQ{I|L}AEK{I|L} 9 0 + 53.799 0 0 5.0112 5.0112 82.483 0 0 0 0.3107924439223382 0.3107924439223382 0.3107924439223382 0.3107924439223382 0 2.423877368056628 0 0.7198565171985376 0.7323981695649701 + + {M(Oxidation (M))|F}PEQ{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}AG{I|L}AEK{I|L};[EP]Q{M(Oxidation (M))|F}{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}A[K{I|L}]E;{M(Oxidation (M))|F}PE[AG]{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}AVAAEK{I|L};[EP]{M(Oxidation (M))|F}AG{I|L}A[K{I|L}]E;[EP]Q{M(Oxidation (M))|F}{I|L}A[K{I|L}]E;[EP][AG]{M(Oxidation (M))|F}{I|L}AEK{I|L} 5.0112;4.9822;4.6592;4.6276;4.2461;4.1534;4.0807;3.9231;3.8915;3.7699 +;-;-;-;-;-;-;-;-;- + 2803 + NaN NaN 478208.5 NaN 8579 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11468 54.244 NaN 328370 35 0 58555 0.261 -1 YSTTKTLPM 9 63 529.2671823461645 NaN 0 529.2822265625 PEAK HCD FTMS 0 0 0 11464 6778.70947265625 0.3287389792807352 -1 0.022876739501953125 4 Oxidation (M) _YSTTKTLPM(Oxidation (M))_ ENST00000548491.1_1_12:56347119-56347549:+|nuORF 10.823927491677226 0.2427956001690155 2 VP 2 -1 10.969 0 0 1.0382 0 0 695.3206673272915 162.0559481256469 857.3766154529384 0 0 0 0 0 0 0 0 0 VP 1.0382 - 31 + NaN NaN 148804.7 NaN 8580 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11469 54.247 NaN 270960 35 0 29933 0.261 + 883 AYAIIKEEL 9 55 525.2974650483845 1048.580377163569 2 525.2979125976562 MULTI HCD FTMS 0 0 0 11464 117217.265625 0.042277546057974104 12 -0.2559165954589844 5 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 53.832793166522166 0.026208976789938845 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}V{[SA]|[TG]}E{I|L} 10 3 + 74.882 0 0 7.1413 7.1413 87.255 0 0 0 16.746199743006045 67.89258754269092 16.746199743006045 3.0372751160733458 0 1 1.6989700043360187 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}V{[SA]|[TG]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}KEE{I|L} 7.1413;6.8516 -;+ + 115 NaN NaN 137711.1 NaN 8581 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11470 54.251 NaN 458050 35 0 23478 0.261 + 28625 TQTLVREYF 9 67 578.8034858498341 1155.5924187664682 2 578.8032836914062 MULTI HCD FTMS 0 0 0 11464 127341.0390625 0.95715388519969 -4 0.10437774658203125 6 Unmodified _TQTLVREYF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 59.05245873256422 0.018907022117377846 2 [QT]T{I|L}VREY{M(Oxidation (M))|F} 9 0 + 45.969 0 0 3.978 3.978 86.829 0 0 0 6.314183012119699 6.314183012119699 6.314183012119699 11.458060777829054 0 2.1237125054200234 0 1.1549471895720984 0.3807196863200844 + + [QT]T{I|L}VREY{M(Oxidation (M))|F};[QT]T{I|L}{[WT]|[RM]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QS]|[NT]}P{I|L}{[MG]|[TS]}V{I|L}T[NP];[QT][VP]{[MG]|[TS]}V{I|L}T[NP];{[QS]|[NT]}P{I|L}{[WT]|[RM]}{I|L}T[NP];[QT]T{I|L}{[WT]|[RM]}[VP][NP];{[QS]|[NT]}P{I|L}V{[MG]|[TS]}{I|L}T[NP];[QT][VP]V{[MG]|[TS]}{I|L}T[NP];[QT][VP]{[MG]|[TS]}V{I|L}P{[QS]|[NT]};[QT]T[WP]V[{I|L}T][NP] 3.978;2.9864;2.8502;2.6631;2.5759;2.3888;2.3634;2.1763;2.0548;1.9161 +;-;-;-;-;-;-;-;-;- + 324 NaN NaN 172459.3 NaN 8582 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11471 54.254 NaN 219640 35 0 14387 0.261 + 1782 CLSPLPQGGSW 11 57 572.7748097997344 1143.5350666662687 2 572.775146484375 MULTI HCD FTMS 0 0 0 11464 49137.125 0.6346561255792407 5 -0.14727020263671875 7 Unmodified _CLSPLPQGGSW_ REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF 12.872603262515298 0.344922997490724 2 VSW 3 -1 30.802 0 0 2.6936 0 0 753.3422108380875 0 753.3422108380875 0 12.218487496163561 0 0 0 1 0 0 0 VSW 2.6936 - 64 NaN NaN 117607.1 NaN 8583 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11472 54.257 NaN 96101 35 0 15201 0.261 + 23486 RLYWALAPLW 10 39 644.8618769293843 1287.7092009255684 2 644.86083984375 MULTI HCD FTMS 0 0 0 11464 39377.09765625 1 0 0 8 Unmodified _RLYWALAPLW_ REV__ENSG00000198198|ENST00000634258|SZT2;REV__nc|ENSG00000198198|Q5T011-5|SZT2 10.823927491677226 0.4098686510432541 2 R{[QG]|[NA]} 3 -1 7.4473 0 0 0.57834 0 0 928.5192127912125 0 928.5192127912125 0 4.9730248405664685 0 0 0 0 0 0 0 R{[QG]|[NA]} 0.57834 - 4 NaN NaN 92733.6 NaN 8584 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11473 54.261 NaN 142960 35 0 20710 0.262 + 27033 SYLTAFREAG 10 48 557.7796302200263 NaN 0 557.5777587890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _SYLTAFREAG_ REV__ENSG00000149218|ENST00000278505|ENDOD1 5.731851221503515 0.33527861879838866 2 S 1 -1 4.6041 0 0 0.41346 0 0 587.7711612195463 435.7088717096313 1023.4800329291777 0 0 0 0 0 0 0 0 0 S 0.41346 + + 1 + NaN NaN 96586.2 NaN 8585 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11474 54.264 NaN 153220 35 0 12940 0.261 + -1 MIKKVDKQCC 10 37 634.8121337890625 NaN 0 634.8121337890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))IKKVDKQC(Carbamidomethyl (C))C_ REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1 1.4819007175156935 0.33891598740166873 2 C(Carbamidomethyl (C)) 1 -1 1.9897 0 0 0.15733 0 0 550.9242746076187 550.7335299127561 1101.6578045203748 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.15733 + + 1 + NaN NaN 113194.7 NaN 8586 2886 11464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11476 54.269 NaN 826480 35 0 132960 0.327 + 662 APLEDEATL 9 73 479.73994085724706 957.4653287812941 2 479.7401123046875 MULTI HCD FTMS 0 0 0 11475 588236.625 0.16032879939344866 8 -0.17179489135742188 1 Unmodified _APLEDEATL_ ENSG00000149806|ENST00000529639|FAU 100.37149154755038 0.004254194004462789 2 [PA]{I|L}EDEAT{I|L} 9 0 + 82.617 0 0 8.6288 8.6288 91.367 0 0 0 15.460025441274752 16.478174818886373 15.460025441274752 7.474250108400469 0 1.6237125054200234 1.3979400086720375 0.3807196863200844 0 + + [PA]{I|L}EDEAT{I|L};[PA]{I|L}DEEAT{I|L};{[QN]|[E{I|L}]|[KN]}[PA]DEAT{I|L};{[QN]|[E{I|L}]|[KN]}[DP]AEAT{I|L};{[QN]|[E{I|L}]|[KN]}[PG]EEAT{I|L};[PA]{I|L}EDE[{I|L}T]A;[{I|L}T]AEDE{I|L}PA;[PA]{I|L}EDD[VS]{I|L};[PA]{I|L}DEE[{I|L}T]A;{[CP]|[EA]}[{I|L}P]DEAT{I|L} 8.6288;7.8481;7.0141;6.2334;6.2334;6.0903;5.8857;5.4421;5.3096;5.1569 +;-;-;-;-;-;-;-;-;- + 863 NaN NaN 209734.3 NaN 8587 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11477 54.273 NaN 1210000 35 0 338370 0.261 -1 RRMYNLFWRHF 11 82 547.944406655497 1640.811390566691 3 547.9440307617188 MULTI HCD FTMS 0 0 0 11475 292084.5625 0.5848443643714396 -3 0.09809494018554688 2 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 1.3296431237094175 0.4130893034510334 2 NQQH{I|L}Y{M(Oxidation (M))|F} 7 -1 77.478 0 0 4.7219 0 0 692.3650549842426 0 692.3650549842426 0 59.240537970515064 0 0 0 2.8505762035186217 0 0 0.8494850021680094 NQQH{I|L}Y{M(Oxidation (M))|F} 4.7219 - 1475 NaN NaN 264557.6 NaN 8588 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11478 54.277 NaN 362320 35 0 18051 0.261 + 19683 NWNCMQCL 8 69 506.1955923376212 1010.3766317420424 2 506.19573974609375 MULTI HCD FTMS 0 0 0 11475 64822.546875 0.11206129051044164 6 -0.1463623046875 3 Unmodified _NWNCMQCL_ ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8 2.302733041254933 0.5385759549224092 2 [Y{I|L}]{M(Oxidation (M))|F} 3 7 19.922 0 0 1.9717 0 0 0 584.1471203528081 584.1471203528081 4.436974992327126 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F} 1.9717 - 35 NaN NaN 140089.6 NaN 8589 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11479 54.28 NaN 250670 35 0 30848 0.261 -1 0 52 553.5863473585449 1657.7372126758346 3 553.9208984375 MULTI HCD FTMS 0 0 0 11475 45463.22265625 0.34285177893953067 6 -0.1463623046875 4 NaN NaN 2 {I|L}QE[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 48.237 0 0 2.9098 0 0 571.2563954084 0 571.2563954084 0 41.247293946369794 0 0 0 1 0 0 0.4247425010840047 {I|L}QE[C(Carbamidomethyl (C))M]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9098 - 107 NaN NaN 116008.4 NaN 8590 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11480 54.283 NaN 217360 35 0 21133 0.261 + 26782 SYGSVFKAI 9 65 486.2635448227977 970.5125367123954 2 486.2636413574219 MULTI HCD FTMS 0 0 0 11475 44546.59375 0.5427271344530729 -1 0.036144256591796875 5 Unmodified _SYGSVFKAI_ ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3 36.506200033944 0.08138327636155518 2 SG[MT] 4 7 24.425 0 0 2.5167 0 0 576.3629627912125 0 576.3629627912125 0 0.7133375178436552 0 0 0 0.7742275032520141 0 0.3494850021680094 0 SG[MT] 2.5167 - 65 NaN NaN 112778.7 NaN 8591 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11481 54.287 NaN 312270 35 0 67357 0.261 -1 0 59 503.10550411180316 502.09822764520317 1 503.10791015625 MULTI HCD FTMS 0 0 0 11475 54590.234375 0.699727971744711 32 -0.6079063415527344 6 NaN NaN 2 G{M(Oxidation (M))|F} 2 -1 20.969 0 0 4.1763 0 0 279.99832637742816 0 279.99832637742816 0 16.94537812595911 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 4.1763 - 25 + NaN NaN 130120.8 NaN 8592 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11482 54.29 NaN 459460 35 0 151230 0.262 + 5438 FIFDLPAHQK 10 54 405.88895641224536 1214.6450398369361 3 405.8891296386719 MULTI HCD FTMS 0 0 0 11475 97709.7734375 0.5283314404082601 -4 0.1276092529296875 7 Unmodified _FIFDLPAHQK_ ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 21.799462835604743 0.30720719660089946 2 {M(Oxidation (M))|F}{I|L}[YR]{I|L}{M(Oxidation (M))|F}D{[QN]|[E{I|L}]|[KN]} 9 6 + 48.35 0 0 3.9806 3.9806 84.372 0 0 0 33.74606867853579 0.20181229336984075 0.20181229336984075 8.226825097560422 0 1 0 0.4247425010840047 0 {M(Oxidation (M))|F}{I|L}[YR]{I|L}{M(Oxidation (M))|F}D{[QN]|[E{I|L}]|[KN]};{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}{I|L}[YR]{[QN]|[E{I|L}]|[KN]} 3.9806;3.3033 -;- 124 + NaN NaN 154354.2 NaN 8593 2887 11475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11484 54.295 NaN 450100 35 0 49577 0.327 + 27351 SYSDPPLKF 9 65 527.2658773538705 1052.5172017745408 2 527.2665405273438 MULTI HCD FTMS 0 0 0 11483 168292.703125 0.8782010676143527 -2 0.062335968017578125 1 Unmodified _SYSDPPLKF_ ENSG00000169813|ENST00000682386|HNRNPF 85.64151623876279 0.004640175941193596 2 {[{M(Oxidation (M))|F}C]|[YS]}SDP[{I|L}P]K{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 48.958 5.2288 2.0907 4.6515 4.6515 61.784 0 0 0 0 41.96858230198188 0 0 0 2.3494850021680094 0 0.3494850021680094 0.3252574989159953 + + {[{M(Oxidation (M))|F}C]|[YS]}SDP[{I|L}P]K{M(Oxidation (M))|F} 4.6515 + + 55 + NaN NaN 168183.2 NaN 8594 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11485 54.299 NaN 475620 35 0 52261 0.261 -1 RYTALVTLM 9 87 542.2973426329405 NaN 0 542.27880859375 PEAK HCD FTMS 0 0 0 11483 12670.4501953125 1 0 0 2 Oxidation (M) _RYTALVTLM(Oxidation (M))_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 10.073929032068715 0.24642998803896465 2 QT{I|L} 3 -1 24.693 0 0 2.2809 0 0 131.13247298497646 606.2343233697874 737.3667963547639 0 0 0 0 0 0 0 0.8494850021680094 0 QT{I|L} 2.2809 - 145 + NaN NaN 151584.7 NaN 8595 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11486 54.303 NaN 324340 35 0 35790 0.261 + 6376 FPGEAERVAF 10 73 561.7830951444712 1121.5516373557423 2 561.7830200195312 MULTI HCD FTMS 0 0 0 11483 116755.9453125 0.7239762584308613 -11 0.2876777648925781 3 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 59.05245873256422 0.044867740978679724 2 {M(Oxidation (M))|F}PGEAERVA{M(Oxidation (M))|F} 10 0 + 78.837 0 0 7.0293 7.0293 94.028 0 0 0 59.93623790491817 16.53212513775344 16.53212513775344 30.428418131619992 0 2.548455006504028 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}PGEAERVA{M(Oxidation (M))|F};{M(Oxidation (M))|F}D[PA]AERVA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[KT]A[NS][NP] 7.0293;4.3162;2.6859 +;-;- + 320 + NaN NaN 142848.5 NaN 8596 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11487 54.306 NaN 298820 35 0 51940 0.261 + 29568 VADENLKAF 9 57 503.76383685349714 1005.5131207737943 2 503.76446533203125 MULTI HCD FTMS 0 0 0 11483 22201.0078125 0.38005591447204234 1 -0.02947998046875 4 Unmodified _VADENLKAF_ ENSG00000204237|ENST00000374741|OXLD1;ENST00000571503.1_2_17:79632233-79633555:-|nuORF;ENST00000575963.1_1_17:79632233-79632626:-|nuORF;ENST00000575992.1_1_17:79632233-79633184:-|nuORF 7.910154910731844 0.2910521888787154 2 {I|L}KA{M(Oxidation (M))|F} 4 5 21.146 0 0 2.103 0 0 528.2184652752436 0 528.2184652752436 0 1.76091259055681 0 0 0 0 0 0 0 + {I|L}KA{M(Oxidation (M))|F} 2.103 + + 106 + NaN NaN 127914.4 NaN 8597 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11488 54.31 NaN 160320 35 0 12115 0.261 + 35424 YYEILKIFI 9 53 601.3466026015182 NaN 0 601.32666015625 PEAK HCD FTMS 0 0 0 11483 30830.666015625 1 0 0 5 Unmodified _YYEILKIFI_ tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1 4.75600775471527 0.27219989241163056 2 S{I|L}NQ{I|L} 5 7 8.6278 0 0 0.71858 0 0 319.21525022245766 323.10334192447505 642.3185921469327 0 0 0 0 0 0.24299281909993908 0 0 0 S{I|L}NQ{I|L} 0.71858 - 19 + NaN NaN 118550.4 NaN 8598 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11489 54.313 NaN 199200 35 0 9516.7 0.261 -1 MYIARQLSF 9 67 572.7948208155524 NaN 0 572.7955932617188 PEAK HCD FTMS 0 0 0 11483 33152.85546875 0.4542022235282646 -9 0.22864913940429688 6 Oxidation (M) _M(Oxidation (M))YIARQLSF_ ENSG00000064932|ENST00000361757|SBNO2;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;nc|ENSG00000139697|A3KN83-2|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 38.175570920033316 0.08412639609110066 2 S{I|L}E{I|L}{I|L}{I|L} 6 -1 26.674 0 0 2.3325 0 0 165.0783591277206 307.0751131647094 472.15347229243 0 0 0 0 0 1.6747425010840047 0 0.3807196863200844 0 S{I|L}E{I|L}{I|L}{I|L} 2.3325 - 66 + NaN NaN 123735 NaN 8599 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11490 54.316 NaN 91132 35 0 23224 0.264 -1 0 34 410.4097549799205 NaN 0 410.83563232421875 PEAK HCD FTMS 0 0 0 11483 7830.58740234375 0.9142436926931733 -1 0.02619171142578125 7 NaN NaN 2 {I|L} 1 -1 2.7642 0 0 0.33759 0 0 528.4630208467566 174.23728357486564 702.7003044216223 0 0 0 0 0 0 0 0 0 {I|L} 0.33759 - 5 + NaN NaN 100553.4 NaN 8600 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11491 54.32 NaN 103810 35 0 11122 0.261 + -1 MFASFDVSPDL 11 40 622.7772457413151 1243.5399385494302 2 622.776611328125 MULTI HCD FTMS 0 0 0 11483 24844.916015625 0.44359049145636686 -2 0.062335968017578125 8 Oxidation (M) _M(Oxidation (M))FASFDVSPDL_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107756.4 NaN 8601 2888 11483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11493 54.324 NaN 1739700 35 0 164460 0.327 + 9765 HYILHNSFF 9 103 589.2930776435726 1176.571602353945 2 589.2935180664062 MULTI HCD FTMS 0 0 0 11492 782839.3125 0.5337247521684462 4 -0.09069061279296875 1 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 168.65858592105317 4.556178112754322E-09 2 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 101.37 0 0 8.6154 8.6154 91.153 0 0 0 6.878873201147485 6.878873201147485 6.878873201147485 6.878873201147485 0 2.329689690656103 1.5228787452803376 0.9247425010840047 0.5 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}NHS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}NSH{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}GGHS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}NSH{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVN[{I|L}T]H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.6154;8.0308;7.8328;7.5714;7.1369;6.9958;6.7888;6.6747;6.3878;6.2908 +;+;-;-;-;-;-;-;-;- + 3560 NaN NaN 350698.4 NaN 8602 2889 11492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11494 54.329 NaN 2616500 35 0 297590 0.261 + 24074 RYAEAVQLL 9 102 531.8009984074675 1061.587443881735 2 531.8012084960938 MULTI HCD FTMS 0 0 0 11492 757161.8125 0.972347083903197 1 -0.0227813720703125 2 Unmodified _RYAEAVQLL_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 40.23920728925047 0.06424668180817725 2 QVCQVE{I|L} 7 7 56.838 0 0 5.3541 0 0 244.17845351386876 0 244.17845351386876 0 14.90778928100886 0 0 0 1.305462187404089 0 0 1.3129529932484498 QVCQVE{I|L} 5.3541 - 4772 NaN NaN 486844 NaN 8603 2889 11492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11495 54.332 NaN 619670 35 0 128990 0.261 + 26012 SPEEIDAQL 9 64 501.24310530133044 1000.4716576694609 2 501.24322509765625 MULTI HCD FTMS 0 0 0 11492 298667.84375 0.15086908077713013 -7 0.19619369506835938 3 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 78.7280429016045 0.006263961847259105 2 D{I|L}QDAQ{I|L} 7 5 70.368 0 0 7.0334 0 0 199.09564406562657 0 199.09564406562657 0 48.5450293571364 0 0 0 1.4247425010840047 0 1.4049471895720984 0 D{I|L}QDAQ{I|L} 7.0334 - 382 NaN NaN 178553.6 NaN 8604 2889 11492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11496 54.336 NaN 432790 35 0 28811 0.261 + 3562 EITPPVVLR 9 78 512.313433769832 1022.6123146064641 2 512.3137817382812 MULTI HCD FTMS 0 0 0 11492 91343.34375 0.8650156720051955 -1 0.02947998046875 4 Unmodified _EITPPVVLR_ ENSG00000181163|ENST00000296930|NPM1;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-2|NPM1;nc|ENSG00000181163|P06748-3|NPM1 29.081581746732265 0.1154664336125038 2 {[QN]|[E{I|L}]|[KN]}TP[VP]V[R{I|L}] 9 0 + 40.876 0 0 3.9972 3.9972 89.876 0 0 0 18.582268588648247 7.147642715192504 7.147642715192504 40.8759123398972 0 0.7742275032520141 1.3010299956639813 0 0 + + {[QN]|[E{I|L}]|[KN]}TP[VP]V[R{I|L}] 3.9972 + + 237 + NaN NaN 151864.8 NaN 8605 2889 11492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11497 54.339 NaN 137230 35 0 7163.5 0.261 + 35896 YYSNLHQTF 9 47 586.7734384002898 1171.5323238673795 2 586.771484375 MULTI HCD FTMS 0 0 0 11492 11373.9404296875 0.17880080600497533 25 -0.4480705261230469 5 Unmodified _YYSNLHQTF_ ENSG00000171806|ENST00000310392|METTL18 9.38312468134398 0.279288223203164 2 NT{M(Oxidation (M))|F} 3 6 22.167 0 0 1.8921 0 0 791.3642445294937 0 791.3642445294937 0 11.709412807357749 0 0 0 0 0 0.5 0 NT{M(Oxidation (M))|F} 1.8921 - 8 NaN NaN 112707.4 NaN 8606 2889 11492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11498 54.342 NaN 279530 35 0 13350 0.261 + 7608 FYHKYFNYL 9 62 647.8164504130114 1293.6183478928226 2 647.8164672851562 MULTI HCD FTMS 0 0 0 11492 38680.75 0.04209374218681348 39 -0.7915191650390625 6 Unmodified _FYHKYFNYL_ ENSG00000151348|ENST00000533608|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2 41.95555342248728 0.056367691549927025 2 {M(Oxidation (M))|F}NY{I|L} 4 5 34.513 0 0 2.668 0 0 738.3468495099625 0 738.3468495099625 0 14.820618910682484 0 0 0 0.3807196863200844 0 0 0.805462187404089 + {M(Oxidation (M))|F}NY{I|L} 2.668 + + 41 NaN NaN 125931.4 NaN 8607 2889 11492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11500 54.347 NaN 2571100 35 0 281900 0.327 + 32373 VYVQNVVKL 9 100 531.321455670176 1060.6283584071518 2 531.3216552734375 MULTI HCD FTMS 0 0 0 11499 1419188.875 0.8004110796215614 -1 0.0227813720703125 1 Unmodified _VYVQNVVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 128.3654064809346 0.00070410514679239 2 [YV]VQNVVK{I|L} 9 0 + 85.063 0 0 8.0201 8.0201 89.148 0 0 0 12.956349637772746 50.83712716444445 12.956349637772746 3.979400086720375 0 2.1989700043360187 1.5228787452803376 0 1.055462187404089 + + [YV]VQNVVK{I|L};[YV]VQNVV{I|L}K;[YV]VQGGVVK{I|L};[YV]V[AG]NVVK{I|L};[YV]QVNVVK{I|L};[YV]VQGGVV{I|L}K;[YV]V[AG]NVV{I|L}K;[YV]QVNVV{I|L}K;[YV]V{[NV]|[RG]}QVK{I|L};[YV]QVGGVVK{I|L} 8.0201;7.6449;7.1519;7.1519;7.0557;6.7767;6.7767;6.6805;6.3628;6.1875 +;-;-;-;-;-;-;-;-;- + 4057 NaN NaN 482133.8 NaN 8608 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11501 54.352 NaN 951450 35 0 83341 0.261 + 18257 MPDVDLHL 8 84 478.23150982867156 954.4484667241431 2 478.23138427734375 MULTI HCD FTMS 0 0 0 11499 489070.375 0.7939004670798874 -7 0.20606231689453125 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 67.986 0 0 7.1231 7.1231 88.243 0 0 0 4.6040937697618745 35.13251345633968 4.6040937697618745 5.835930278655553 0 2.305462187404089 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};{M(Oxidation (M))|F}DPVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}][{M(Oxidation (M))|F}V]VPDE;[H{I|L}]{I|L}{[ES]|[DT]|[{I|L}C]}MPE;[YN][DV][KT]C{I|L} 7.1231;6.5116;5.1129;5.0201;3.6214;3.2416;0.011638 +;+;-;-;-;-;- + 387 NaN NaN 235946.6 NaN 8609 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11502 54.355 NaN 619540 35 0 279540 0.261 + 8560 HASLSEYVL 9 50 509.764033487205 1017.51351404121 2 509.7643127441406 MULTI HCD FTMS 0 0 0 11499 381453.71875 0.9917388401016266 3 -0.06790924072265625 3 Unmodified _HASLSEYVL_ ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-2|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-5|SIGMAR1 15.847184025352803 0.2234401846867398 2 YV{I|L} 3 6 35.445 0 0 3.4835 0 0 624.285448142775 0 624.285448142775 0 30.84121882396211 0 0 0 0.9247425010840047 0 0 0 + YV{I|L} 3.4835 + + 35 NaN NaN 178356.3 NaN 8610 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11503 54.358 NaN 393420 35 0 53730 0.261 + 17956 MITDLEERL 9 70 568.2867272456716 1134.5589015581431 2 568.286865234375 MULTI HCD FTMS 0 0 0 11499 244101.21875 0.2161467441786332 19 -0.3177032470703125 4 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 71.70789743142352 0.008535567138151097 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 102.23 0 0 9.0109 9.0109 89.22 0 0 0 19.889917747712644 78.93273655296431 19.889917747712644 1.020599913279625 0 2 2 1.0629529932484498 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]RE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[R{M(Oxidation (M))|F}]TE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]ER{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}{[ET]|[MV]}{M(Oxidation (M))|F}R{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}{[ET]|[MV]}R{M(Oxidation (M))|F}{I|L} 9.0109;8.9209;5.0801;2.6139;2.3059;1.7089;0.42948;0.32044 -;+;-;-;-;-;-;- + 547 NaN NaN 145855.7 NaN 8611 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11504 54.362 NaN 446870 35 0 48334 0.261 + 26696 SYAPPTDSF 9 59 492.7189982409705 983.423443548741 2 492.7192077636719 MULTI HCD FTMS 0 0 0 11499 138124.296875 0.28493044212984914 7 -0.125335693359375 5 Unmodified _SYAPPTDSF_ ENSG00000118515|ENST00000367858|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 107.1870275148908 0.00340162908551068 2 {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 77.555 5.2288 2.0907 7.8862 7.8862 67.226 0 0 0 0 62.86185231360048 0 0 0 3.1237125054200234 0 1.6421590589602533 0 + + {[{M(Oxidation (M))|F}C]|[YS]}APPTDS{M(Oxidation (M))|F} 7.8862 + + 365 + NaN NaN 148045.7 NaN 8612 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11505 54.365 NaN 288780 35 0 20194 0.261 + 22350 QPLSKTWEL 9 76 551.3006420893469 1100.5867312454936 2 551.3015747070312 MULTI HCD FTMS 0 0 0 11499 106736.8203125 0.7822738695136157 -3 0.07845306396484375 6 Unmodified _QPLSKTWEL_ ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000121481|Q99496-2|RNF2 26.268140514670165 0.13340543277302316 2 M{M(Oxidation (M))|F} 2 9 17.959 0 0 1.6317 0 0 804.5008070284999 0 804.5008070284999 0 1.7878877499903432 0 0 0 0 0 0 0 M{M(Oxidation (M))|F} 1.6317 - 227 + NaN NaN 135403.6 NaN 8613 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11506 54.368 NaN 170230 35 0 7388.6 0.261 + 33158 YELSLIGKVF 10 58 584.8355600795906 NaN 0 584.8111572265625 PEAK HCD FTMS 0 0 0 11499 11316.986328125 0.23760424690285575 -1 0.0227813720703125 7 Unmodified _YELSLIGKVF_ REV__ATG4C|p.A334Sfs*7|1|0.07|ENSG00000125703|chr1:62834103-62834104|-/AGTA|frameshift_variant;REV__ENSG00000125703|ENST00000317868|ATG4C 3.2813086475875832 0.33737594360511275 2 {M(Oxidation (M))|F}HR{I|L}H 5 -1 18.928 0 0 1.621 0 0 165.12929672446813 309.1239107721313 474.25320749659943 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}HR{I|L}H 1.621 - 168 + NaN NaN 108327 NaN 8614 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11507 54.372 NaN 131760 35 0 9865.1 0.261 + 8349 GYIERPQLI 9 61 544.8085408954453 1087.6025288576905 2 544.7582397460938 MULTI HCD FTMS 0 0 0 11499 16061.3017578125 0.02954288212027954 15 -0.2333526611328125 8 Unmodified _GYIERPQLI_ ENSG00000164329|ENST00000453514|TENT2;nc|ENSG00000164329|Q6PIY7-2|TENT2 20.41453444215458 0.18397929046831515 2 RETT{I|L} 5 7 25.674 0 0 2.3606 0 0 469.2901783673844 0 469.2901783673844 0 -0.01226231188276472 -0.01226231188276472 0 0 1.274227503252014 0 0 0 RETT{I|L} 2.3606 - 73 NaN NaN 102540.6 NaN 8615 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11508 54.375 NaN 71188 35 0 4179.2 0.261 + -1 SWMSTYWTW 9 33 632.2621459960938 NaN 0 632.2621459960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _SWM(Oxidation (M))STYWTW_ REV__ENST00000244670.12_1_6:42988531-42988804:+|nuORF 0.5247636613948944 0.2927039108006614 2 R 1 -1 3.0989 0 0 0.24546 0 0 558.1135421857438 545.2591646783811 1103.372706864125 0 0 0 0 0 0 0 0 0 R 0.24546 - 2 + NaN NaN 99618 NaN 8616 2890 11499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11510 54.38 NaN 1705400 35 0 111210 0.327 + 28350 TPDEIDHVF 9 103 536.7508092441368 1071.4870655550735 2 536.7512817382812 MULTI HCD FTMS 0 0 0 11509 710924.0625 0.2771385805831408 5 -0.0800018310546875 1 Unmodified _TPDEIDHVF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 180.00974506902125 1.0762292318080308E-12 2 TPDE{I|L}DHV{M(Oxidation (M))|F} 9 0 + 99.916 0 0 9.325 9.325 90.207 0 0 0 2.6943862309300783 2.6943862309300783 2.6943862309300783 2.6943862309300783 0 3.024227503252014 1.3979400086720375 0.8684151806525389 0 + + TPDE{I|L}DHV{M(Oxidation (M))|F};[TP]DE{I|L}DHV{M(Oxidation (M))|F};[DP]TE{I|L}DHV{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}PE{I|L}DHV{M(Oxidation (M))|F};[DP]ET{I|L}DHV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT{I|L}DHV{M(Oxidation (M))|F};[TP]D[TP]{I|L}HYE;[DP]EG[NP]PTV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PG[NP]PTV{M(Oxidation (M))|F};[TP]D[TP]{I|L}[WE]N 9.325;9.0735;6.5052;6.3147;5.5946;5.5207;3.5159;2.6751;2.6012;2.5613 +;+;-;-;-;-;-;-;-;- + 1581 + NaN NaN 342737.2 NaN 8617 2891 11509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11511 54.384 NaN 684740 35 0 86662 0.261 + 34302 YPDSHLPTL 9 86 521.7638635348422 1041.5131741364844 2 521.7640380859375 MULTI HCD FTMS 0 0 0 11509 320660.6875 0.6302492739273826 7 -0.10864639282226562 2 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 141.82661023413823 1.746659319327287E-05 2 YPD[HS]{I|L}PT{I|L} 9 0 + 84.592 0 0 8.122 8.122 94.307 0 0 0 14.688105454342804 14.688105454342804 14.688105454342804 14.688105454342804 0 2.4876954943324545 1.3010299956639813 1.6861818737241734 0 + + YPD[HS]{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};Y[{I|L}A][YR]DE{I|L} 8.122;6.7118;1.7019 +;+;- + 408 + NaN NaN 198849.7 NaN 8618 2891 11509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11513 54.389 NaN 1319700 35 0 60409 0.327 + 6219 FPEQIAEKL 9 114 537.7948942668613 1073.5752356005225 2 537.79541015625 MULTI HCD FTMS 0 0 0 11512 327129 0.6961989849106635 2 -0.038501739501953125 1 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 83.27773906761396 0.004791753909894001 2 {M(Oxidation (M))|F}PEQ{I|L}AEK{I|L} 9 0 + 65.019 0 0 6.0563 6.0563 87.289 0 0 0 29.808043580264936 0.7036650189576648 0.7036650189576648 7.996608277701277 0 2.360924374808178 0 0.8274509799928715 0.5387254899964358 + + {M(Oxidation (M))|F}PEQ{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}G{I|L}AAEK{I|L};{M(Oxidation (M))|F}PE[AG]{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}GA{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}G{I|L}AA[K{I|L}]E;[EP]Q{M(Oxidation (M))|F}{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}GA{I|L}A[K{I|L}]E;[{M(Oxidation (M))|F}E]PG{I|L}AAEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}A[K{I|L}]E 6.0563;5.3114;5.1986;5.179;4.8034;4.6501;4.6128;4.5176;4.0372;3.9092 +;-;-;-;-;-;-;-;-;- + 2801 + NaN NaN 285661.3 NaN 8619 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11514 54.393 NaN 299050 35 0 74344 0.261 -1 0 55 607.3449436817949 606.3376672151949 1 607.3456420898438 MULTI HCD FTMS 0 0 0 11512 124421.5546875 0.3737604690046493 6 -0.09922027587890625 2 NaN NaN 2 [Q{I|L}]TV{M(Oxidation (M))|F} 5 -1 + 35.942 0 0 5.9277 5.9277 92.474 0 0 0 3.634993639681312 15.93704052456225 3.634993639681312 35.94212497064703 0 0 0 0.8494850021680094 0 [Q{I|L}]TV{M(Oxidation (M))|F} 5.9277 - 31 NaN NaN 137690.8 NaN 8620 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11515 54.397 NaN 233840 35 0 22577 0.263 + 27719 TASIVEQSL 9 55 474.25584463359417 946.4971363339884 2 474.2560729980469 MULTI HCD FTMS 0 0 0 11512 152462.609375 0.6343719256947491 -6 0.15669631958007812 3 Unmodified _TASIVEQSL_ ENSG00000165169|ENST00000378578|DYNLT3 83.42873516780209 0.004742894019233849 2 [TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}QS{I|L} 9 0 + 68.611 0 0 7.2489 7.2489 90.74 0 0 0 5.6424927368725974 50.90797194541551 5.6424927368725974 9.208187539523749 0 2.079689690656103 0 1.4916440611282626 0.3054621874040891 + + [TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}QS{I|L};[TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}[AG]S{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}QS{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}[AG]S{I|L};[TA]S{I|L}{NN|[MP]|[D{I|L}]|[EV]}[VG][TA];[TA]{NN|[MP]|[D{I|L}]|[EV]}{[TV]|[{I|L}S]}QS{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KP]S{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[{M(Oxidation (M))|F}V][VG][PG] 7.2489;6.2761;3.711;2.7324;2.6725;2.3079;0.30276;0.22923 +;-;-;-;-;-;-;- + 269 NaN NaN 112606.2 NaN 8621 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11516 54.4 NaN 539850 35 0 29634 0.261 -1 SPERMMALG 9 100 512.2341790844806 1022.4538052357613 2 512.2341918945312 MULTI HCD FTMS 0 0 0 11512 172948.703125 0.6173319268208997 -3 0.06488037109375 4 2 Oxidation (M) _SPERM(Oxidation (M))M(Oxidation (M))ALG_ ENST00000564218.5_1_16:31448362-31454203:-|nuORF 34.40172386719151 0.0910440009062557 2 SPEE{I|L}DA 7 -1 61.909 0 0 6.0549 0 0 0 278.11188684635005 278.11188684635005 39.25714160714605 0 0 0 0 2.2302046884880937 1.5228787452803376 0 0 SPEE{I|L}DA 6.0549 - 496 + NaN NaN 169282.3 NaN 8622 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11517 54.404 NaN 240500 35 0 74367 0.261 + 1625 AYYEFKKQFF 10 39 457.5639921594862 1369.6701470786586 3 457.56488037109375 MULTI HCD FTMS 0 0 0 11512 78331.6953125 0.7111904108153895 1 -0.02581024169921875 5 Unmodified _AYYEFKKQFF_ ENSG00000061936|ENST00000261674|SFSWAP;ENST00000538548.5_1_12:132198725-132271134:+|nuORF;nc|ENSG00000061936|Q12872-2|SFSWAP 12.174745833636585 0.39723355204102767 2 AY 2 8 45.217 0 0 3.3013 0 0 0 1132.5467114246474 1132.5467114246474 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 + AY 3.3013 + + 7 + NaN NaN 122501.1 NaN 8623 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11518 54.407 NaN 366350 35 0 15892 0.261 + 28626 TQTLVREYF 9 75 578.8034858498341 1155.5924187664682 2 578.80322265625 MULTI HCD FTMS 0 0 0 11512 116727.296875 0.8773761117021189 2 -0.038501739501953125 6 Unmodified _TQTLVREYF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 30.7034409873982 0.10802119112323902 2 [QT]T{I|L}{[WT]|[RM]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 3 + 28.948 0 0 2.505 2.505 80.015 0 0 0 0.2018122933698443 0.2018122933698443 0.2018122933698443 0.2018122933698443 0 1.1549471895720984 0 0.3807196863200844 0 [QT]T{I|L}{[WT]|[RM]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QT]TR[EP]{I|L}T[NP];[QT]T{I|L}V{[RE]|[WV]}Y{M(Oxidation (M))|F};[QT][VP]{[WT]|[RM]}{I|L}T[NP];[QT]TR[EP][VP][QT];[QT]T{I|L}V[WP]T[NP] 2.505;2.4876;2.2754;1.6465;1.2485;0.90072 -;-;+;-;-;- + 218 + NaN NaN 141759.4 NaN 8624 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11519 54.41 NaN 336230 35 0 24865 0.261 + 32388 VYWEGIDEP 9 72 554.2518708551063 1106.4891887770125 2 554.0781860351562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VYWEGIDEP_ ENSG00000124253|ENST00000319441|PCK1;nc|ENSG00000124253|P35558-2|PCK1 11.640296217721598 0.25978676193971967 2 [Y{I|L}]{I|L}SEVRN 8 8 47.221 0 0 4.2677 0 0 0 128.95089047650018 128.95089047650018 8.637444175349316 0 0 0 0 0 1.6989700043360187 0.28872548999643577 0 [Y{I|L}]{I|L}SEVRN 4.2677 - 411 NaN NaN 134021.4 NaN 8625 2892 11512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11521 54.415 NaN 1010400 35 0 308020 0.327 -1 RRMYNLFWRHF 11 78 547.944406655497 1640.811390566691 3 547.9442138671875 MULTI HCD FTMS 0 0 0 11520 377841.25 0.7565559911765628 3 -0.044765472412109375 1 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 1.3296431237094175 0.4130893034510334 2 NQQH{I|L}Y{M(Oxidation (M))|F} 7 -1 79.06 0 0 4.8184 0 0 692.3661651289076 0 692.3661651289076 0 63.487219860018556 0 0 0 3.0356668758921828 0 0 0.4247425010840047 NQQH{I|L}Y{M(Oxidation (M))|F} 4.8184 - 610 NaN NaN 229330.4 NaN 8626 2893 11520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11522 54.419 NaN 556690 35 0 43962 0.261 -1 SGNCDTCGAL 10 73 527.6988964673711 1053.3832400015422 2 527.698974609375 MULTI HCD FTMS 0 0 0 11520 183258.296875 0.7005544749922992 -3 0.06790924072265625 2 2 Carbamidomethyl (C) _SGNC(Carbamidomethyl (C))DTC(Carbamidomethyl (C))GAL_ nc|ENSG00000044115|P35221-2|CTNNA1 4.897010918128616 0.4493830473644964 2 DDG{M(Oxidation (M))|F} 4 -1 25.918 0 0 2.4604 0 0 601.229023594765 0 601.229023594765 0 5.3706086345021475 0 0 0 0 0 0 0 DDG{M(Oxidation (M))|F} 2.4604 - 221 + NaN NaN 170403 NaN 8627 2893 11520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11523 54.423 NaN 315700 35 0 26330 0.261 + 17007 LYISEVRNI 9 70 553.8138662557106 1105.6131795782212 2 553.8140869140625 MULTI HCD FTMS 0 0 0 11520 120083.015625 0.8171858944041048 -4 0.09069061279296875 3 Unmodified _LYISEVRNI_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 86.33184430468982 0.004622086694044132 2 [Y{I|L}]{I|L}SEVRN{I|L} 9 0 + 89.778 0 0 8.1202 8.1202 92.209 0 0 0 24.13734275855269 71.81926257837823 24.13734275855269 9.208187539523749 0 2.774227503252014 1.6989700043360187 0.5994850021680094 0 + + [Y{I|L}]{I|L}SEVRN{I|L};[Y{I|L}]{I|L}SEVRGG{I|L};[YV][{I|L}T]EVRN{I|L};[YV][{I|L}T]EVRGG{I|L} 8.1202;7.2873;5.4321;4.5993 +;-;-;- + 362 NaN NaN 133290.2 NaN 8628 2893 11520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11525 54.428 NaN 309530 35 0 17010 0.327 + 18353 MPLLRQEEL 9 69 564.8079557829891 1127.601358632778 2 564.8088989257812 MULTI HCD FTMS 0 0 0 11524 143539.15625 0.5878528618653862 -4 0.08060073852539062 1 Unmodified _MPLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 89.40071534611396 0.0045416704840156395 2 {I|L}RQEE{I|L} 6 3 53.479 0 0 4.7427 0 0 341.1770923553273 0 341.1770923553273 0 13.30198135264581 0 0 0 1.3252574989159953 0 0.3807196863200844 0.3054621874040891 + {I|L}RQEE{I|L} 4.7427 + + 372 NaN NaN 126115.6 NaN 8629 2894 11524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11526 54.432 NaN 385590 35 0 121270 0.264 + 5439 FIFDLPAHQK 10 62 405.88895641224536 1214.6450398369361 3 405.8891296386719 MULTI HCD FTMS 0 0 0 11524 151125.765625 0.8171597438666651 3 -0.044734954833984375 2 Unmodified _FIFDLPAHQK_ ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 11.517880264261096 0.4033776509493788 2 {I|L}{M(Oxidation (M))|F}D{[QN]|[E{I|L}]|[KN]} 5 6 18.468 0 0 1.5204 0 0 579.31300277587 0 579.31300277587 0 4.488474775526186 0 0 0 1.1989700043360187 0 0 0 {I|L}{M(Oxidation (M))|F}D{[QN]|[E{I|L}]|[KN]} 1.5204 - 37 NaN NaN 140882.6 NaN 8630 2894 11524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11527 54.436 NaN 152550 35 0 9190.6 0.261 + 23518 RNIKIKKKKK 10 28 642.452880859375 NaN 0 642.452880859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RNIKIKKKKK_ tr|U7SV77|U7SV77_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01546PE=4SV=1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107150.4 NaN 8631 2894 11524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11529 54.44 NaN 445120 35 0 219820 0.327 -1 0 52 437.235052705695 436.227776239095 1 439.2405090332031 MULTI HCD FTMS 0 0 0 11528 603367 0.7817904388369227 -1 0.0127410888671875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.3478 0 0 271.1491304644841 0 271.1491304644841 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.3478 - 28 + NaN NaN 149643.7 NaN 8632 2895 11528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11530 54.445 NaN 842860 35 0 217840 0.261 -1 RRMYNLFWRHF 11 75 547.944406655497 1640.811390566691 3 548.2796020507812 MULTI HCD FTMS 0 0 0 11528 103833.625 0.25682281594296325 6 -0.07287979125976562 2 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 1.3296431237094175 0.4130893034510334 2 GA[MT]{I|L}D[HQ]{I|L}Y{M(Oxidation (M))|F} 11 -1 48.704 0 0 2.9683 0 0 346.184373924025 0 346.184373924025 0 25.01449128003774 0 0 0 1 0 0 0.4247425010840047 GA[MT]{I|L}D[HQ]{I|L}Y{M(Oxidation (M))|F} 2.9683 - 420 NaN NaN 212844.9 NaN 8633 2895 11528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11531 54.448 NaN 345460 35 0 30702 0.261 + 6377 FPGEAERVAF 10 75 561.7830951444712 1121.5516373557423 2 561.7838134765625 MULTI HCD FTMS 0 0 0 11528 126880.484375 0.7867561527581878 -4 0.0606689453125 3 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 40.72490554402381 0.1391161235525472 2 {M(Oxidation (M))|F}PGEAE[RV]A{M(Oxidation (M))|F} 10 0 + 60.856 0 0 5.4261 5.4261 90.509 0 0 0 53.06987521229523 13.521825181113627 13.521825181113627 20.48455006504028 0 1.579689690656103 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}PGEAE[RV]A{M(Oxidation (M))|F};{M(Oxidation (M))|F}D[PA]AE[RV]A{M(Oxidation (M))|F} 5.4261;3.5996 +;- + 80 + NaN NaN 139048.9 NaN 8634 2895 11528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11532 54.452 NaN 336020 35 0 33415 0.261 -1 MPHDLITQL 9 82 542.2785510482393 1082.5425491632784 2 542.2789916992188 MULTI HCD FTMS 0 0 0 11528 152874.765625 0.7243531469838722 9 -0.1173248291015625 4 Oxidation (M) _M(Oxidation (M))PHDLITQL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 36.12702656103203 0.08312389501731911 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L}TQ{I|L} 9 -1 + 60.925 0 0 5.628 5.628 87.924 0 0 0 15.62014972766029 35.718421963928435 15.62014972766029 9.208187539523749 0 1.6549471895720984 1.2218487496163564 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L}TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QN]|[E{I|L}]|[KN]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L};{[QN]|[E{I|L}]|[KN]}T{[YC]|[HE]}{I|L}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[HV]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[{M(Oxidation (M))|F}D]|MM}[WR]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]TQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}[R{M(Oxidation (M))|F}][WR];{[QN]|[E{I|L}]|[KN]}[HV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}C{I|L} 5.628;4.7774;3.7841;3.639;2.9335;2.6082;2.4103;1.6819;1.4418;1.2137 -;-;-;-;-;-;-;-;-;- 460 NaN NaN 136438.8 NaN 8635 2895 11528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11533 54.455 NaN 220340 35 0 13836 0.261 -1 MYSFVNDKF 9 62 583.7632193575866 1165.5118857819732 2 583.7634887695312 MULTI HCD FTMS 0 0 0 11528 97948.703125 0.9598564667296494 2 -0.031993865966796875 5 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 37.07464296494664 0.07877380486334713 2 DNV{M(Oxidation (M))|F}S[YE] 7 -1 37.356 0 0 3.2051 0 0 293.1734791486344 0 293.1734791486344 0 16.38698526850746 0 0 0 1.3494850021680094 0 0.3807196863200844 0 DNV{M(Oxidation (M))|F}S[YE] 3.2051 - 133 NaN NaN 118256.4 NaN 8636 2895 11528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11535 54.46 NaN 745600 35 0 181510 0.327 + 19962 NYGHVYAVF 9 87 535.2587686638383 1068.5029843944765 2 535.2592163085938 MULTI HCD FTMS 0 0 0 11534 388937.71875 0.8874460748109633 -1 0.0193328857421875 1 Unmodified _NYGHVYAVF_ ENSG00000067829|ENST00000217901|IDH3G;nc|ENSG00000067829|P51553-2|IDH3G 70.71552829651908 0.008856681705782516 2 [YN][RH]YAV 7 3 60.507 0 0 5.6627 0 0 0 162.05628068705064 162.05628068705064 30.32924130362474 0 0 0 0 2.1989700043360187 1.6989700043360187 0 0.7302046884880937 [YN][RH]YAV 5.6627 - 586 NaN NaN 212974.5 NaN 8637 2896 11534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11536 54.464 NaN 908550 35 0 82191 0.261 + 9766 HYILHNSFF 9 89 589.2930776435726 1176.571602353945 2 589.2935791015625 MULTI HCD FTMS 0 0 0 11534 465474.25 0.31735137052413087 11 -0.16281509399414062 2 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 147.05914393524117 1.1935124485855994E-05 2 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 98.836 0 0 8.4003 8.4003 89.69 0 0 0 3.9328615835069343 3.9328615835069343 3.9328615835069343 3.9328615835069343 0 2.412437995416459 1.5228787452803376 1.4049471895720984 0.6382104921644451 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HSN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HSGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{M(Oxidation (M))|F}[RV]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{M(Oxidation (M))|F}VVGN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}{[QG]|[NA]}YH{M(Oxidation (M))|F} 8.4003;8.0661;7.472;7.2834;7.0753;6.6894;6.6084;4.3086;4.0962;3.907 -;+;-;-;-;-;+;-;-;- + 974 + NaN NaN 245846.4 NaN 8638 2896 11534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11537 54.468 NaN 305130 35 0 20265 0.261 -1 YPESESIMM 9 82 551.7257351767972 NaN 0 551.7257690429688 PEAK HCD FTMS 0 0 0 11534 75564.4765625 0.533016628780051 1 -0.012660980224609375 3 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.13043271994793734 2 {M(Oxidation (M))|F} 1 -1 10.485 0 0 0.9519 0 0 149.05179478683107 802.3240171739346 951.3758119607658 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.9519 + + 22 + NaN NaN 131867.7 NaN 8639 2896 11534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11539 54.472 NaN 2232900 35 0 432140 0.327 + 26013 SPEEIDAQL 9 86 501.24310530133044 1000.4716576694609 2 501.2433166503906 MULTI HCD FTMS 0 0 0 11538 1504622.375 0.7600449776674439 1 -0.01598358154296875 1 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 142.0795815696625 1.719916958814042E-05 2 {[DA]|[EG]}Q{I|L}QDAQ 8 5 81.257 0 0 8.1218 0 0 0 128.07239929786502 128.07239929786502 43.88673707186568 0 0 0 0 1.4247425010840047 1.154901959985743 2.221848749616356 0.28872548999643577 {[DA]|[EG]}Q{I|L}QDAQ 8.1218 - 1037 NaN NaN 423444.5 NaN 8640 2897 11538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11540 54.477 NaN 1713200 35 0 253100 0.261 + 32374 VYVQNVVKL 9 89 531.321455670176 1060.6283584071518 2 531.3218383789062 MULTI HCD FTMS 0 0 0 11538 989018.125 0.5577982459850824 6 -0.06591796875 2 Unmodified _VYVQNVVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 123.45060196383646 0.0010021686353097689 2 VYVQNVVK{I|L} 9 0 + 95.997 0 0 9.0509 9.0509 89.427 0 0 0 1.3464343345171415 1.3464343345171415 1.3464343345171415 1.3464343345171415 0 3.004432191740108 1.5228787452803376 0 0.6109243748081782 + + VYVQNVVK{I|L};[YV]VQNVVK{I|L};[YV]VQNVV{I|L}K;VYV[AG]NVVK{I|L};VYVQGGVVK{I|L};[YV]QVNVVK{I|L};[YV]V[AG]NVVK{I|L};[YV]VQGGVVK{I|L};[YV]QVNVV{I|L}K;[YV]V[AG]NVV{I|L}K 9.0509;8.924;8.4741;8.1827;8.1827;8.0774;8.0558;8.0558;7.6275;7.6059 +;+;-;-;-;-;-;-;-;- + 1773 + NaN NaN 359276.2 NaN 8641 2897 11538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11541 54.48 NaN 933420 35 0 90418 0.261 + 18258 MPDVDLHL 8 85 478.23150982867156 954.4484667241431 2 478.2316589355469 MULTI HCD FTMS 0 0 0 11538 616034.875 1 0 0 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 68.655 0 0 7.1932 7.1932 87.369 0 0 0 3.0854562117252016 3.0854562117252016 3.0854562117252016 3.0854562117252016 0 2.305462187404089 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}]{I|L}{[ES]|[DT]|[{I|L}C]}MPE;[H{I|L}]D[{I|L}T]MPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]Y[NS]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[C(Carbamidomethyl (C))K][YK]{I|L};[{I|L}T][MN]Y[NS]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]Y[KG]E;{[ES]|[DT]|[{I|L}C]}S[VG]Y[NS]{I|L} 7.1932;6.8699;5.3177;3.2752;2.9164;1.4817;0.76675;0.64243;0.53679;0.37498 +;+;-;-;-;-;-;-;-;- + 485 NaN NaN 225670.9 NaN 8642 2897 11538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11542 54.484 NaN 273740 35 0 16401 0.261 + 21369 PTPEVTTKSW 10 65 573.2961960613138 NaN 0 573.2972412109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PTPEVTTKSW_ REV__ENSG00000143924|ENST00000318522|EML4;REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF;REV__nc|ENSG00000143924|Q9HC35-2|EML4 5.731851221503515 0.33527861879838866 2 S{I|L} 2 -1 10.261 0 0 0.89647 0 0 166.08276820948066 775.3545015924436 941.4372698019242 0 0 0 0 0 0 0 0.3807196863200844 0 S{I|L} 0.89647 - 50 + NaN NaN 123426.8 NaN 8643 2897 11538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11544 54.488 NaN 234570 35 0 25083 0.326 -1 0 42 594.1556265302461 593.148350063646 1 593.7481079101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 124194.9 NaN 8644 2898 11543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11546 54.495 NaN 761100 35 0 132560 0.327 + 13163 KYLQSTISF 9 75 543.7952929306103 1085.5760329280206 2 543.7955932617188 MULTI HCD FTMS 0 0 0 11545 486875.15625 0.35734874382094217 -7 0.10610580444335938 1 Unmodified _KYLQSTISF_ ENSG00000100038|ENST00000357179|TOP3B;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;nc|ENSG00000100038|O95985-2|TOP3B;nc|ENSG00000100038|O95985-3|TOP3B;TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant 100.0907132914201 0.004261551473353346 2 [YK]{I|L}QST{I|L}S{M(Oxidation (M))|F} 9 0 + 90.768 0 0 8.3613 8.3613 92.573 0 0 0 5.6424927368725974 9.433115814076345 5.6424927368725974 9.208187539523749 0 2.805462187404089 0 1.110924374808178 0 + + [YK]{I|L}QST{I|L}S{M(Oxidation (M))|F};[YK]{I|L}[AG]ST{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GKST{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}GKST{I|L}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TGKST{I|L}S{M(Oxidation (M))|F};[YK]{I|L}{[ET]|[MV]}AKS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}T{I|L}[YQ]KS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}T{I|L}[YQ]SK{M(Oxidation (M))|F} 8.3613;7.513;7.2585;5.6935;5.3691;4.2799;3.6349;1.8578 +;-;-;-;-;-;-;- + 989 + NaN NaN 215959.5 NaN 8645 2899 11545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11547 54.499 NaN 97902 35 0 9704.6 0.261 -1 SFSMLMREMP 10 37 622.7776636272941 NaN 0 623.2295532226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _SFSMLM(Oxidation (M))REMP_ ENST00000430246.6_1_14:21702150-21702276:-|nuORF 2.9952420565917617 0.3376207769591857 2 {I|L} 1 -1 8.9794 0 0 0.72208 0 0 678.2770546942382 449.15387903385005 1127.4309337280883 0 0 0 0 0 0.5 0 0 0 {I|L} 0.72208 + + 16 + NaN NaN 115771 NaN 8646 2899 11545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11549 54.504 NaN 287680 35 0 33029 0.327 + 17957 MITDLEERL 9 65 568.2867272456716 1134.5589015581431 2 568.2874145507812 MULTI HCD FTMS 0 0 0 11548 120360.7578125 0.10657704234852315 29 -0.6312751770019531 1 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 63.227496030279354 0.01306643085373406 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L} 9 2 + 98.906 0 0 8.7176 8.7176 89.081 0 0 0 19.379617791072832 85.94720941673181 19.379617791072832 1.549471895720984 0 2 2 0.7302046884880937 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}ERE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]RE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[R{M(Oxidation (M))|F}]TE{I|L};{[QN]|[E{I|L}]|[KN]}{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]ER{I|L} 8.7176;8.581;4.9715;2.5892;2.2812;1.6375 -;+;-;-;-;- + 354 NaN NaN 133506.8 NaN 8647 2900 11548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11550 54.508 NaN 479610 35 0 38041 0.261 + 34303 YPDSHLPTL 9 90 521.7638635348422 1041.5131741364844 2 521.7632446289062 MULTI HCD FTMS 0 0 0 11548 101361.1953125 0.19922248732194445 16 -0.31395721435546875 2 Unmodified _YPDSHLPTL_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 103.74828524460852 0.00396301343438984 2 YPD[HS]{I|L}PT{I|L} 9 0 + 70.27 0 0 6.7469 6.7469 91.131 0 0 0 11.672268755754658 11.672268755754658 11.672268755754658 11.672268755754658 0 2.309894379144197 1.3010299956639813 1.1307196863200843 0 + + YPD[HS]{I|L}PT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HS]{I|L}PT{I|L};Y[{I|L}A][YR]DE{I|L} 6.7469;5.6262;0.99585 +;+;- + 227 + NaN NaN 173737.3 NaN 8648 2900 11548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11552 54.513 NaN 717520 35 0 38314 0.327 + 6220 FPEQIAEKL 9 93 537.7948942668613 1073.5752356005225 2 537.7952880859375 MULTI HCD FTMS 0 0 0 11551 227187.03125 0.483501556086795 11 -0.21331024169921875 1 Unmodified _FPEQIAEKL_ ENSG00000116212|ENST00000371370|LRRC42 92.20098385977256 0.0044682926920227755 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}AEK{I|L} 9 0 + 74.91 0 0 6.9777 6.9777 89.296 0 0 0 1.2050654486819212 49.6540249085764 1.2050654486819212 9.050244867691433 0 2.190614065464281 1.6989700043360187 0.6382104921644451 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}AEK{I|L};[EP]Q{M(Oxidation (M))|F}{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}Q{I|L}AEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[VA]|[{I|L}G]}AAEK{I|L};{M(Oxidation (M))|F}PEQ{I|L}AEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[AG]{I|L}AEK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}A[K{I|L}]E;{M(Oxidation (M))|F}PE[AG]{I|L}AEK{I|L};[EP]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}AAEK{I|L};[EP][AG]{M(Oxidation (M))|F}{I|L}AEK{I|L} 6.9777;6.1346;6.1174;6.0195;6.0187;5.8871;5.4077;5.161;5.1593;5.0441 +;-;-;-;+;-;-;-;-;- + 1183 NaN NaN 199948.8 NaN 8649 2901 11551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11553 54.518 NaN 215370 35 0 9100.6 0.261 -1 0 56 583.067069306203 NaN 0 583.3058471679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 SW 2 -1 10.331 0 0 0.88744 0 0 308.70895443096225 579.2638033502561 887.9727577812184 0 0 0 0 0 0 0 0.3252574989159953 0 SW 0.88744 - 10 + NaN NaN 126856.2 NaN 8650 2901 11551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11555 54.522 NaN 414570 35 0 26589 0.327 + 26051 SPERMMALG 9 89 512.2341790844806 1022.4538052357613 2 512.234375 MULTI HCD FTMS 0 0 0 11554 178727.25 0.6379581669262698 7 -0.14227676391601562 1 2 Oxidation (M) _SPERM(Oxidation (M))M(Oxidation (M))ALG_ ENST00000564218.5_1_16:31448362-31454203:-|nuORF 41.8396318013385 0.056899836730939755 2 SPEE{I|L}DA 7 5 71.138 0 0 6.9575 0 0 0 278.1119478815063 278.1119478815063 44.27062918686282 0 0 0 0 2.1989700043360187 1.0457574905606752 0.25 0 SPEE{I|L}DA 6.9575 - 333 + NaN NaN 155012.8 NaN 8651 2902 11554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11556 54.527 NaN 353710 35 0 23558 0.261 + 27720 TASIVEQSL 9 69 474.25584463359417 946.4971363339884 2 474.25616455078125 MULTI HCD FTMS 0 0 0 11554 126924.265625 0.5281110636371272 4 -0.0706939697265625 2 Unmodified _TASIVEQSL_ ENSG00000165169|ENST00000378578|DYNLT3 86.33184430468982 0.004622086694044132 2 [TA]S{I|L}EVQS{I|L} 9 2 + 46.299 0 0 4.8916 4.8916 88.134 0 0 0 23.85135877880016 0.020505443712991678 0.020505443712991678 11.822581265925436 0 1.9604093769761874 0 1.0189301784845295 0.2614393726401688 [TA]S{I|L}EVQS{I|L};[TA]S{I|L}EV[AG]S{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}TEV[TA]S{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}M[KP]S{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[CP]|[EA]}V[TA]S{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[PS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[TP]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[CP]|[EA]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 4.8916;3.6425;2.547;2.2508;2.0113;0.77296;0.45492;0.42932 -;-;-;-;-;-;-;- 292 + NaN NaN 147346.9 NaN 8652 2902 11554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11557 54.53 NaN 106140 35 0 9224.3 0.261 + 8624 HECDSCQPCCD 11 39 620.1802978515625 NaN 0 620.1802978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HECDSCQPCCD_ REV__ENSG00000135253|ENST00000610776|KCP;REV__nc|ENSG00000135253|Q6ZWJ8|KCP 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109975.9 NaN 8653 2902 11554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11558 54.534 NaN 84268 35 0 4825.4 0.261 -1 0 37 597.6054519118442 NaN 0 597.6597900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 A 1 -1 6.9897 0 0 0.5858 0 0 131.73133617498212 987.4086397760374 1119.1399759510196 0 0 0 0 0 0 0 0 0 A 0.5858 - 1 + NaN NaN 114740 NaN 8654 2902 11554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11560 54.538 NaN 421390 35 0 34586 0.327 -1 LYMDHYHI 8 87 554.2518708551063 1106.4891887770125 2 554.252197265625 MULTI HCD FTMS 0 0 0 11559 76622.8671875 0.49592167900454504 1 -0.019412994384765625 1 Oxidation (M) _LYM(Oxidation (M))DHYHI_ ENST00000375204.2_1_9:100053158-100058044:+|nuORF;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF 20.871210003555333 0.44023077629866025 2 VY 2 -1 38.443 0 0 3.4744 0 0 0 841.3331895204448 841.3331895204448 -1.1194126402513405 0 -1.1194126402513405 0 0 0.3494850021680094 1.6989700043360187 0 0 VY 3.4744 - 744 + NaN NaN 148859.1 NaN 8655 2903 11559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11561 54.543 NaN 441350 35 0 45626 0.261 + 18214 MPDLPEKL 8 71 471.7519921809124 941.4894314286248 2 471.7523193359375 MULTI HCD FTMS 0 0 0 11559 255391.40625 0.43861416916130785 -4 0.043048858642578125 2 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 36.506200033944 0.2758116748432176 2 MPD{I|L}[EP]K{I|L} 8 0 + 68.773 0 0 7.3047 7.3047 93.474 0 0 0 42.80394370788876 9.080306233405295 9.080306233405295 17.960893593153955 0 2.0356668758921828 1.3010299956639813 0 0 + + MPD{I|L}[EP]K{I|L};{NN|[MP]|[D{I|L}]|[EV]}D{I|L}[EP]K{I|L};{NN|[MP]|[D{I|L}]|[EV]}D{I|L}K[EP]{I|L};[DP]M{I|L}[EP]K{I|L};[DP]{I|L}M[EP]K{I|L};[DP]M{I|L}K[EP]{I|L};[DP]{I|L}MK[EP]{I|L} 7.3047;5.397;4.5462;3.2484;2.3976;2.3976;1.5468 +;+;-;-;-;-;- + 192 + NaN NaN 162871 NaN 8656 2903 11559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11562 54.546 NaN 335170 35 0 32086 0.261 + 8611 HDLCLTGLSW 10 69 572.7747440205148 1143.5349351078296 2 572.7754516601562 MULTI HCD FTMS 0 0 0 11559 37362.40234375 0.3453548909180034 -3 0.03421783447265625 3 Unmodified _HDLCLTGLSW_ REV__ENST00000506287.1_1_4:8594572-8599194:+|nuORF 18.1463463914782 0.3413772152514074 2 VSW 3 -1 40.635 0 0 3.5534 0 0 753.3436530753688 0 753.3436530753688 0 10.909817168486938 0 0 0 1.305462187404089 0 0.28872548999643577 0 VSW 3.5534 - 220 NaN NaN 135616.4 NaN 8657 2903 11559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11563 54.55 NaN 347110 35 0 19371 0.261 + 10651 IPVEEHFQTL 10 71 606.816709331158 1211.618865729116 2 606.8177490234375 MULTI HCD FTMS 0 0 0 11559 106939.15625 0.367548938726932 -4 0.043048858642578125 4 Unmodified _IPVEEHFQTL_ ENSG00000105186|ENST00000306065|ANKRD27 40.72490554402381 0.1391161235525472 2 NV[SG]H{M(Oxidation (M))|F}QT{I|L} 9 4 50.389 0 0 4.1588 0 0 210.1364002912125 0 210.1364002912125 0 36.972645579454436 0 0 0 0.9247425010840047 0 0.3807196863200844 0.28872548999643577 NV[SG]H{M(Oxidation (M))|F}QT{I|L} 4.1588 - 806 NaN NaN 156306.1 NaN 8658 2903 11559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11564 54.553 NaN 150500 35 0 42100 0.264 + 5440 FIFDLPAHQK 10 42 405.88895641224536 1214.6450398369361 3 406.2242126464844 MULTI HCD FTMS 0 0 0 11559 94042.046875 0.5084994912631855 12 -0.253570556640625 5 Unmodified _FIFDLPAHQK_ ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 5.40270961882225 0.4467063037482923 2 E 1 10 11.237 0 0 0.92514 0 0 131.1217518454376 951.4679778791458 1082.5897297245833 0 0 0 0 0 0.4247425010840047 0 0 0 E 0.92514 - 9 + NaN NaN 125337.2 NaN 8659 2903 11559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11566 54.558 NaN 756400 35 0 88919 0.327 + 19668 NVQGPDWHL 9 77 533.259426564391 1064.504300195582 2 533.2598266601562 MULTI HCD FTMS 0 0 0 11565 399201.40625 0.5726411761910781 9 -0.19504928588867188 1 Unmodified _NVQGPDWHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 99.75527289724121 0.004270341300239591 2 NVQG[DP]WH{I|L} 9 0 + 88.355 0 0 8.3001 8.3001 94.362 0 0 0 76.38260131492802 10.202264589233394 10.202264589233394 13.455612550363796 0 2.443672679568534 2 0.3807196863200844 0.4247425010840047 + + NVQG[DP]WH{I|L};NV[AG]G[DP]WH{I|L};{[NV]|[RG]}QG[DP]WH{I|L};{[NV]|[RG]}[AG]G[DP]WH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}NG[DP]WH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}GGG[DP]WH{I|L};[PA][DN]{[NV]|[RG]}WH{I|L};[EP][NG]{[NV]|[RG]}WH{I|L} 8.3001;7.0361;5.8089;4.9439;4.6437;3.7787;2.0242;1.9069 +;-;+;-;-;-;-;- + 256 + NaN NaN 211148.5 NaN 8660 2904 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11567 54.562 NaN 286750 35 0 46594 0.261 + 27314 SYQKVMALW 9 63 571.2892037872349 1140.5638546412697 2 571.2898559570312 MULTI HCD FTMS 0 0 0 11565 100473.6640625 0.44173279797661924 -8 0.097991943359375 2 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 57.72198328787511 0.020768266150574023 2 {M(Oxidation (M))|F}A{I|L}W 4 5 50.745 0 0 4.4492 0 0 605.3177967755875 0 605.3177967755875 0 28.86623162815269 0 0 0 1.8807196863200843 0 0 0 + {M(Oxidation (M))|F}A{I|L}W 4.4492 + + 112 NaN NaN 148956.6 NaN 8661 2904 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11568 54.566 NaN 287650 35 0 23772 0.261 + 18354 MPLLRQEEL 9 75 564.8079557829891 1127.601358632778 2 564.8079223632812 MULTI HCD FTMS 0 0 0 11565 178811.90625 0.7323095214631905 6 -0.1264801025390625 3 Unmodified _MPLLRQEEL_ EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 23.789781309258295 0.1548179064208189 2 {I|L}D{I|L}{I|L}K 5 7 43.972 0 0 3.8996 0 0 0 542.2340181940061 542.2340181940061 32.545094889371526 0 0 0 0 0.5 1.154901959985743 0 0 {I|L}D{I|L}{I|L}K 3.8996 - 122 + NaN NaN 134881.3 NaN 8662 2904 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11569 54.569 NaN 376290 35 0 16955 0.261 -1 FPDRIMNTF 9 82 578.77670921455 NaN 0 578.7764282226562 PEAK HCD FTMS 0 0 0 11565 86490.1953125 0.0349981190172102 -34 0.7439384460449219 4 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 27.223235318498237 0.13891432002837067 2 TN 2 -1 16.454 0 0 1.4239 0 0 165.08633533150197 772.346152240588 937.4324875720899 0 0 0 0 0 0.4247425010840047 0 0 0.4247425010840047 TN 1.4239 - 34 + NaN NaN 149395.4 NaN 8663 2904 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11570 54.572 NaN 131380 35 0 10568 0.262 + 17716 MAVIDGNVM 9 53 483.2253310532273 NaN 0 483.22491455078125 PEAK HCD FTMS 0 0 0 11565 68846.015625 0.5681361171172902 4 -0.07761001586914062 5 Oxidation (M) _MAVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 65.23502041540118 0.015547834519309937 2 V[NG]D{I|L}V 6 7 42.128 0 0 4.3681 0 0 165.0484364226724 199.05501733951408 364.1034537621865 0 0 0 0 0 2.3494850021680094 0 0 0.7742275032520141 V[NG]D{I|L}V 4.3681 - 56 + NaN NaN 108031.6 NaN 8664 2904 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11571 54.576 NaN 187540 35 0 25365 0.261 + 7377 FVGVLVTPLA 10 61 508.31163109109934 NaN 0 508.3118591308594 PEAK HCD FTMS 0 0 0 11565 20698.666015625 0.17625259937116822 7 -0.14603424072265625 6 Unmodified _FVGVLVTPLA_ REV__ENSG00000083444|ENST00000196061|PLOD1;REV__nc|ENSG00000083444|Q02809-2|PLOD1 11.640296217721598 0.3302218087712401 2 VVT 3 -1 15.93 0 0 1.57 0 0 301.1660345437237 411.22309290103755 712.3891274447612 0 0 0 0 0 0.2742275032520141 0 0 0 VVT 1.57 - 39 + NaN NaN 113413.7 NaN 8665 2904 11565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11573 54.58 NaN 847260 35 0 137820 0.327 + 24646 RYLQTLTTI 9 94 554.8214699485749 1107.6283869639497 2 554.8221435546875 MULTI HCD FTMS 0 0 0 11572 316658.625 0.16325717944363763 -7 0.09203338623046875 1 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 53.40400417844725 0.026808823219830042 2 [Y{I|L}]RQT{I|L}TT{I|L} 9 2 + 81.679 0 0 7.3742 7.3742 90.951 0 0 0 8.779769407903757 57.24623562756754 8.779769407903757 9.208187539523749 0 1.805462187404089 1.0969100130080565 0.8252574989159953 0 [Y{I|L}]RQT{I|L}TT{I|L};[Y{I|L}]R[AG]T{I|L}TT{I|L};[Y{I|L}]RQTT{I|L}T{I|L};[Y{I|L}]R[AG]TT{I|L}T{I|L};{[HG]|PP}[VP]{[RE]|[WV]}VTT{I|L} 7.3742;6.5429;6.492;5.6607;3.0295 -;-;-;-;- 2039 NaN NaN 211157.8 NaN 8666 2905 11572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11574 54.585 NaN 207930 35 0 23011 0.261 + 884 AYAIIKEEL 9 66 525.298199255382 NaN 0 525.2986450195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _AYAIIKEEL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF 22.736283301280096 0.1690317064107932 2 {I|L}[HC]{I|L}A 5 8 19.565 0 0 1.8658 0 0 277.22409230831164 231.07752405338127 508.30161636169294 0 0 0 0 0 1.274227503252014 0 0 0 {I|L}[HC]{I|L}A 1.8658 - 48 + NaN NaN 119179.7 NaN 8667 2905 11572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11575 54.588 NaN 114890 35 0 6367.6 0.261 -1 LYANMFERL 9 61 586.7928940813389 NaN 0 586.7739868164062 PEAK HCD FTMS 0 0 0 11572 32371.634765625 0.6076899171577101 -26 0.5142631530761719 3 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 10.073929032068715 0.24642998803896465 2 A 1 -1 10.797 0 0 0.92157 0 0 276.14920141179203 821.3594454400999 1097.5086468518919 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.92157 + + 19 + NaN NaN 107140.6 NaN 8668 2905 11572 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11577 54.593 NaN 797930 35 0 162230 0.327 + 26014 SPEEIDAQL 9 59 501.24310530133044 1000.4716576694609 2 501.2432861328125 MULTI HCD FTMS 0 0 0 11576 521450.34375 0.26340543744083944 10 -0.22487258911132812 1 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 96.11092074494114 0.00436583732602279 2 D{I|L}QDAQ{I|L} 7 5 75.808 0 0 7.5772 0 0 199.0957966535172 0 199.0957966535172 0 53.31176463528833 0 0 0 1.4247425010840047 0 1.860924374808178 0 D{I|L}QDAQ{I|L} 7.5772 - 514 NaN NaN 220130.5 NaN 8669 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11578 54.598 NaN 610100 35 0 45928 0.261 + 9767 HYILHNSFF 9 80 589.2930776435726 1176.571602353945 2 589.29345703125 MULTI HCD FTMS 0 0 0 11576 266438.8125 0.18165284611919333 21 -0.48647308349609375 2 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 99.75527289724121 0.004270341300239591 2 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 + 95.504 0 0 8.1171 8.1171 87.705 0 0 0 0.2596217904876852 0.2596217904876852 0.2596217904876852 0.2596217904876852 0 2.385151878060192 1.5228787452803376 1.1307196863200843 0.3054621874040891 HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}[KA][HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}Y{[QG]|[NA]}H{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}Y{[QG]|[NA]}{M(Oxidation (M))|F}H;{[WN]|[YH]}{I|L}[KA]{[{M(Oxidation (M))|F}D]|MM}H{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}[KA]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}H 8.1171;8.095;7.3124;7.0749;5.8886;4.0805;3.971;3.5655;2.6403;1.8098 -;+;-;-;+;-;-;-;-;- + 516 + NaN NaN 183334.8 NaN 8670 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11579 54.601 NaN 500220 35 0 36985 0.261 + 9678 HVLEEVESL 9 99 527.77371465393 1053.53287637466 2 527.775390625 MULTI HCD FTMS 0 0 0 11576 91838.515625 0.5216314558678009 -3 0.054866790771484375 3 Unmodified _HVLEEVESL_ ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7 61.357469665136826 0.01568246967499496 2 EVES{I|L} 5 4 51.682 0 0 4.9056 0 0 478.2530995099625 0 478.2530995099625 0 27.552725051033065 0 0 0 1.2302046884880937 0 0.3807196863200844 0 + EVES{I|L} 4.9056 + + 468 NaN NaN 163694.7 NaN 8671 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11580 54.605 NaN 238440 35 0 16757 0.261 + 6378 FPGEAERVAF 10 76 561.7830951444712 1121.5516373557423 2 561.7835083007812 MULTI HCD FTMS 0 0 0 11576 60439.2265625 0.3747694816915611 7 -0.15959548950195312 4 Unmodified _FPGEAERVAF_ ENSG00000188636|ENST00000341255|RTL6 27.088373467376528 0.2577365110389662 2 RAVSPE 6 9 24.698 0 0 2.2021 0 0 464.2386646955094 0 464.2386646955094 0 -0.2237030067185941 -0.2237030067185941 0 0 0.7429928190999391 0 0.4247425010840047 0 RAVSPE 2.2021 - 88 NaN NaN 120032.7 NaN 8672 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11581 54.608 NaN 686120 35 0 83630 0.261 + 28156 TIVNILTNR 9 93 522.3139883245171 1042.6134237158342 2 522.3140869140625 MULTI HCD FTMS 0 0 0 11576 186595.78125 0.46119137310416186 -3 0.054866790771484375 5 Unmodified _TIVNILTNR_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 135.86342318000737 0.0002493800389041242 2 [{I|L}T]VN{I|L}{I|L}TNR 9 0 + 100.13 0 0 9.6035 9.6035 93.894 0 0 0 6.490546050082159 6.490546050082159 6.490546050082159 9.208187539523749 0 2.8807196863200843 2 0.8921590589602532 1.4876954943324545 + + [{I|L}T]VN{I|L}{I|L}TNR;[{I|L}T]VN{I|L}{I|L}TGGR;[{I|L}T]VGG{I|L}{I|L}TNR;[{I|L}T]VQV{I|L}TNR;[TP]KT{I|L}{I|L}TNR;[{I|L}T]V[AG]V{I|L}TNR;[{I|L}T]VN{I|L}[RN][{I|L}T];[{I|L}T]P[KT]{I|L}TNR;[{I|L}T]VGG{I|L}{I|L}TGGR;[TP]KT{I|L}{I|L}TGGR 9.6035;8.7203;8.0978;7.763;6.9389;6.8798;6.697;6.49;6.4144;6.0557 +;-;-;-;-;-;-;-;-;- + 926 NaN NaN 188063.5 NaN 8673 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11582 54.611 NaN 106480 35 0 25129 0.262 + 5441 FIFDLPAHQK 10 41 405.88895641224536 1214.6450398369361 3 405.88885498046875 MULTI HCD FTMS 0 0 0 11576 8224.935546875 0.04447346352230733 14 -0.31281280517578125 6 Unmodified _FIFDLPAHQK_ ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 7.945399516374404 0.4332474418965133 2 {M(Oxidation (M))|F} 1 9 13.495 0 0 1.111 0 0 1049.5658447459189 0 1049.5658447459189 0 1.021825181113627 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.111 + + 28 + NaN NaN 90708.9 NaN 8674 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11583 54.614 NaN 221720 35 0 19666 0.261 -1 YPESESIMM 9 71 551.7257351767972 NaN 0 551.7260131835938 PEAK HCD FTMS 0 0 0 11576 76380.4921875 0.5387726389749948 11 -0.23448944091796875 7 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 28.486842064014134 0.13043271994793734 2 S{I|L} 2 -1 13.756 0 0 1.2489 0 0 605.2357283108225 293.0627840631469 898.2985123739695 0 0 0 0 0 0.8807196863200843 0 0 0 S{I|L} 1.2489 + + 12 + NaN NaN 118883.7 NaN 8675 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11584 54.618 NaN 252280 35 0 30843 0.261 -1 0 58 593.1555420702344 592.1482656036344 1 593.15869140625 MULTI HCD FTMS 0 0 0 11576 73479.15625 0.711209575439129 -59 1.2602577209472656 8 NaN NaN 2 R 1 -1 0.48455 0 0 0.081829 0 0 222.0553223436719 210.97515283756096 433.0304751812329 0 0 0 0 0 0 0 0 0 R 0.081829 - 11 + NaN NaN 118175.6 NaN 8676 2906 11576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11586 54.623 NaN 747310 35 0 74873 0.327 + 18259 MPDVDLHL 8 80 478.23150982867156 954.4484667241431 2 478.2315368652344 MULTI HCD FTMS 0 0 0 11585 386880.59375 0.6280173565660548 10 -0.20512008666992188 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 71.208 0 0 7.4606 7.4606 89.916 0 0 0 4.6040937697618745 51.58706824318763 4.6040937697618745 8.208253071758875 0 2.305462187404089 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VD[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P][MT]H{I|L};{[ES]|[DT]|[{I|L}C]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[EP]H{I|L} 7.4606;6.6007;4.1609;2.0341;1.348 +;+;-;-;- + 267 NaN NaN 201835.5 NaN 8677 2907 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11587 54.627 NaN 290560 35 0 19356 0.261 + 18474 MPYLEHESF 9 87 576.755097958121 1151.495642983042 2 576.7557373046875 MULTI HCD FTMS 0 0 0 11585 82317.921875 0.3536518491960824 -3 0.06482315063476562 2 Unmodified _MPYLEHESF_ ENSG00000097046|ENST00000234626|CDC7 85.27202061508552 0.004649858145912257 2 MPY{I|L}YTMS 8 4 70.83 0 0 6.1511 0 0 0 162.05584131412346 162.05584131412346 57.64243415186746 0 0 0 0 1.7231975075880328 1.2218487496163564 1.0189301784845295 0 MPY{I|L}YTMS 6.1511 - 298 + NaN NaN 140860.8 NaN 8678 2907 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11588 54.631 NaN 397440 35 0 52364 0.261 -1 RRMYNLFWRHF 11 77 547.944406655497 1640.811390566691 3 548.2820434570312 MULTI HCD FTMS 0 0 0 11585 117602.1015625 0.2908778623889092 18 -0.3877220153808594 3 Oxidation (M) _RRM(Oxidation (M))YNLFWRHF_ ENSG00000130766|ENST00000253063|SESN2 1.3296431237094175 0.4130893034510334 2 Y{M(Oxidation (M))|F} 2 -1 29.776 0 0 1.8147 0 0 1312.6695098492248 0 1312.6695098492248 0 11.413872233100971 0 0 0 0.8807196863200843 0 0 0 Y{M(Oxidation (M))|F} 1.8147 - 579 NaN NaN 145963.7 NaN 8679 2907 11585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11590 54.635 NaN 1695500 35 0 321980 0.327 + 13164 KYLQSTISF 9 102 543.7952929306103 1085.5760329280206 2 543.7955932617188 MULTI HCD FTMS 0 0 0 11589 1079072 0.7919997944901337 2 -0.048870086669921875 1 Unmodified _KYLQSTISF_ ENSG00000100038|ENST00000357179|TOP3B;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;nc|ENSG00000100038|O95985-2|TOP3B;nc|ENSG00000100038|O95985-3|TOP3B;TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant 136.39213081522345 0.00021731600835925866 2 KY{I|L}QST{I|L}S{M(Oxidation (M))|F} 9 0 + 105.73 0 0 9.7395 9.7395 93.988 0 0 0 65.2521516306279 16.478174818886373 16.478174818886373 9.208187539523749 0 2.8494850021680094 0 1.5911290632962718 0 + + KY{I|L}QST{I|L}S{M(Oxidation (M))|F};KY{I|L}[AG]ST{I|L}S{M(Oxidation (M))|F};KYQ{I|L}ST{I|L}S{M(Oxidation (M))|F};[YK]{I|L}QST{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GKST{I|L}S{M(Oxidation (M))|F};{[HG]|PP}P{I|L}QST{I|L}S{M(Oxidation (M))|F};KY[AG]{I|L}ST{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}GKST{I|L}S{M(Oxidation (M))|F};KY{I|L}{[CA]|SS}AA{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EKST{I|L}S{M(Oxidation (M))|F} 9.7395;8.8913;8.1656;7.9428;7.5109;7.4611;7.3174;6.9563;6.0214;5.7579 +;-;-;+;-;-;-;-;-;- + 2255 + NaN NaN 342547.2 NaN 8680 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11591 54.64 NaN 773810 35 0 115720 0.262 + 10623 IPQLSKEPGYF 11 65 426.8965101929564 1277.6677011790691 3 426.8968811035156 MULTI HCD FTMS 0 0 0 11589 255803.203125 0.8312400946466132 1 -0.02942657470703125 2 Unmodified _IPQLSKEPGYF_ REV__ENSG00000132549|ENST00000357162|VPS13B;REV__nc|ENSG00000132549|Q7Z7G8-6|VPS13B;REV__nc|ENSG00000132549|Q7Z7G8|VPS13B 7.101721422024254 0.3877749288398915 2 Y{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.365 0 0 949.525525474999 0 949.525525474999 0 27.11758134947864 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F} 2.365 + + 10 + NaN NaN 211294.2 NaN 8681 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11592 54.643 NaN 417670 35 0 41876 0.261 + 32375 VYVQNVVKL 9 81 531.321455670176 1060.6283584071518 2 531.3217163085938 MULTI HCD FTMS 0 0 0 11589 157096.671875 0.08860125593954006 17 -0.3749351501464844 3 Unmodified _VYVQNVVKL_ ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1 74.92900055777586 0.007493270374442853 2 [YV]VQNVVK{I|L} 9 0 + 77.59 0 0 7.3155 7.3155 90.842 0 0 0 11.427900303521312 11.427900303521312 11.427900303521312 9.208187539523749 0 2.4247425010840047 1.6989700043360187 0 0.7302046884880937 + + [YV]VQNVVK{I|L};[YV]VQGGVVK{I|L};[YV]V[AG]NVVK{I|L};[YV]QVNVVK{I|L};[YV]V{[NV]|[RG]}QVK{I|L};[YV]QVGGVVK{I|L};[YV][AG]VNVVK{I|L};[YV]VQVVNK{I|L};[YV]VQ[{I|L}A]QK{I|L};[YV]V{[NV]|[RG]}[AG]VK{I|L} 7.3155;6.4473;6.4473;6.2765;6.0937;5.4083;5.4083;5.389;5.2512;5.2255 +;-;-;-;-;-;-;-;-;- + 1333 NaN NaN 144219.3 NaN 8682 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11593 54.647 NaN 490540 35 0 53723 0.261 + 33920 YLQDNHLFFSL 11 71 466.23464886830163 1395.682117205105 3 466.2349548339844 MULTI HCD FTMS 0 0 0 11589 127639.1171875 0.4648646333933698 -5 0.09702301025390625 4 Unmodified _YLQDNHLFFSL_ REV__ENSG00000136011|ENST00000388887|STAB2;REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant 15.538449434065043 0.3216953923945805 2 YS{I|L} 3 -1 36.682 0 0 2.6283 0 0 1014.4919904492889 0 1014.4919904492889 0 21.46591250700361 0 0 0 0.9247425010840047 0 0.4247425010840047 0 YS{I|L} 2.6283 - 61 NaN NaN 152632.4 NaN 8683 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11594 54.65 NaN 263020 35 0 20804 0.261 + 12946 KYIDQGIAEL 10 65 575.3112544268578 1148.6079559205155 2 575.3114013671875 MULTI HCD FTMS 0 0 0 11589 63754.2421875 0.43742813871595726 -4 0.07761001586914062 5 Unmodified _KYIDQGIAEL_ ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 40.72490554402381 0.1391161235525472 2 DQ{[VA]|[{I|L}G]}AE{I|L} 7 3 52.836 0 0 4.6 0 0 404.2426930158219 0 404.2426930158219 0 44.26193375916904 0 0 0 1.7302046884880937 0 0 0.3807196863200844 + DQ{[VA]|[{I|L}G]}AE{I|L} 4.6 + + 404 NaN NaN 117846.2 NaN 8684 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11595 54.653 NaN 263830 35 0 33860 0.261 -1 RYPTTFVMV 9 62 565.2893782966175 1128.564203660035 2 565.2896118164062 MULTI HCD FTMS 0 0 0 11589 67763.125 0.7114027618274458 -1 0.012786865234375 6 Oxidation (M) _RYPTTFVM(Oxidation (M))V_ ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF 32.78568957990786 0.09846250359632436 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 4 -1 43.175 0 0 3.8257 0 0 618.3146229474625 0 618.3146229474625 0 29.987737688117235 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 3.8257 + + 84 NaN NaN 121781.6 NaN 8685 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11596 54.657 NaN 210830 35 0 21402 0.261 + -1 LYITHECL 8 72 524.7602760229961 NaN 0 524.760498046875 PEAK HCD FTMS 0 0 0 11589 38071.92578125 0.5300272224280874 4 -0.09125518798828125 7 Carbamidomethyl (C) _LYITHEC(Carbamidomethyl (C))L_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|81|3|sense 34.18733598223924 0.36535021990301164 2 {I|L} 1 -1 16.237 0 0 1.5501 0 0 276.1470275146003 655.2518850303047 931.398912544905 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.5501 + + 57 + NaN NaN 117202.9 NaN 8686 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11597 54.66 NaN 187290 35 0 29306 0.261 + 30142 VGHMYEYI 8 59 506.23363822392645 NaN 0 506.23431396484375 PEAK HCD FTMS 0 0 0 11589 30229.265625 0.840434558558813 1 -0.02942657470703125 8 Unmodified _VGHMYEYI_ SLITRK3|p.V739M|1|0.29|ENSG00000121871|chr3:165188616-165188616|C/T|missense_variant 8.593279151180031 0.38822285293237185 2 Y 1 7 11.99 0 0 1.1866 0 0 131.0985983702355 713.2724952048928 844.3710935751283 0 0 0 0 0 0.5 0 0 0 + Y 1.1866 + + 3 + NaN NaN 112601.3 NaN 8687 2908 11589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11599 54.665 NaN 675610 35 0 44283 0.327 + 7995 GFGKFAEVSI 10 96 527.7828936923545 NaN 0 527.7735595703125 PEAK HCD FTMS 0 0 0 11598 29076.591796875 0.3302256370997988 -2 0.04221343994140625 1 Unmodified _GFGKFAEVSI_ tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1 36.12702656103203 0.15814681568024677 2 SEPYVE 6 9 33.065 0 0 3.1384 0 0 131.1110767149541 215.1035097711547 346.21458648610883 0 0 0 0 0 0 0 1.066901560044258 0 SEPYVE 3.1384 - 803 + NaN NaN 195403.7 NaN 8688 2909 11598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11600 54.669 NaN 163340 35 0 10887 0.261 + 25752 SLATEGLGLS 10 53 474.25584463359417 946.4971363339884 2 474.2561950683594 MULTI HCD FTMS 0 0 0 11598 79596.328125 0.3311872737707915 11 -0.24123001098632812 2 Unmodified _SLATEGLGLS_ REV__nc|ENSG00000214655|A7E2V4-2|ZSWIM8 18.1463463914782 0.3413772152514074 2 EVQ{[TV]|[{I|L}S]} 5 -1 26.338 0 0 2.7827 0 0 372.20119014433834 0 372.20119014433834 0 9.348331157524967 0 0 0 1.3494850021680094 0 0 0 EVQ{[TV]|[{I|L}S]} 2.7827 - 74 + NaN NaN 103336.8 NaN 8689 2909 11598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11601 54.673 NaN 161410 35 0 5643.7 0.261 -1 ADIPPCFGF 9 54 512.2341790844806 1022.4538052357613 2 512.235107421875 MULTI HCD FTMS 0 0 0 11598 22990.91015625 0.08206492797963272 14 -0.3164176940917969 3 Carbamidomethyl (C) _ADIPPC(Carbamidomethyl (C))FGF_ ENST00000405510.5_2_22:39141725-39144731:-|nuORF 4.75600775471527 0.31496297302216103 2 G{M(Oxidation (M))|F} 2 -1 15.573 0 0 1.5231 0 0 800.3534156867363 0 800.3534156867363 0 7.614393726401687 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.5231 + + 40 + NaN NaN 108866.1 NaN 8690 2909 11598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11602 54.676 NaN 200790 35 0 18363 0.261 + 8867 HMRQVLGAP 9 61 504.77239793391277 NaN 0 504.772216796875 PEAK HCD FTMS 0 0 0 11598 10750.2021484375 0.22787086009613286 5 -0.10758590698242188 4 Unmodified _HMRQVLGAP_ ENSG00000154803|ENST00000285071|FLCN;ENST00000427497.3_1_17:17110364-17131447:-|nuORF;ENST00000577591.1_1_17:17120364-17122368:-|nuORF;FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant 4.3292370932331545 0.2742679634796037 2 G 1 8 4.6041 0 0 0.45697 0 0 164.0668773113818 783.4053438775999 947.4722211889816 0 0 0 0 0 0 0 0 0 + G 0.45697 + + 6 + NaN NaN 131220.4 NaN 8691 2909 11598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11603 54.679 NaN 103040 35 0 7018.8 0.261 + 27584 TAEELQATL 9 50 488.2528934498427 974.4912339664854 2 488.2530517578125 MULTI HCD FTMS 0 0 0 11598 19265.443359375 0.36114346039327516 7 -0.153289794921875 5 Unmodified _TAEELQATL_ ENSG00000128487|ENST00000395527|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;nc|ENSG00000128487|Q5M775-5|SPECC1;SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant 16.149105407346934 0.22083165093524068 2 [TA]{I|L}EEQ{I|L}[TA] 9 4 + 22.381 0 0 2.2967 2.2967 59.818 0 0 0 0.4305997461732183 7.486512420283235 0.4305997461732183 0 0 0.9247425010840047 0 0 0 [TA]{I|L}EEQ{I|L}[TA];[TA]{I|L}EEQ[TA]{I|L};[TA]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WD]{I|L};[TA]{I|L}EE[AG]{I|L}[TA];[TA]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QN]|[E{I|L}]|[KN]}[TA] 2.2967;2.2967;1.4002;1.3518;0.44978 -;-;-;-;- 57 NaN NaN 121709.4 NaN 8692 2909 11598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11605 54.684 NaN 794950 35 0 103400 0.327 + 18215 MPDLPEKL 8 75 471.7519921809124 941.4894314286248 2 471.75201416015625 MULTI HCD FTMS 0 0 0 11604 562185.1875 0.9655077770656451 3 -0.06856918334960938 1 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 81.89019881105858 0.015969967068862622 2 MPD{I|L}PE[K{I|L}] 8 0 + 81.788 0 0 8.6871 8.6871 98.054 0 0 0 48.36696871556164 18.75447181216778 18.75447181216778 69.10728139283881 0 1.9291746928241125 1.5228787452803376 0.3252574989159953 0.8609243748081783 + + MPD{I|L}PE[K{I|L}];[DP]{I|L}[EP]K{I|L}M;[EP]V[EP]K{I|L}M 8.6871;1.3469;1.1917 +;-;- + 189 + NaN NaN 208992.5 NaN 8693 2910 11604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11606 54.689 NaN 396730 35 0 29825 0.261 + 10652 IPVEEHFQTL 10 76 606.816709331158 1211.618865729116 2 606.81689453125 MULTI HCD FTMS 0 0 0 11604 136414.140625 0.46885420057786564 3 -0.06856918334960938 2 Unmodified _IPVEEHFQTL_ ENSG00000105186|ENST00000306065|ANKRD27 81.9152076656658 0.003466872489127602 2 [{I|L}P]D{I|L}EH{M(Oxidation (M))|F}QT{I|L} 10 2 + 54.122 0 0 4.4669 4.4669 82.132 0 0 0 5.764837301042718 29.27349557854647 5.764837301042718 1.2763625255165323 0 1.4163865622122673 0 0.3494850021680094 0 [{I|L}P]D{I|L}EH{M(Oxidation (M))|F}QT{I|L};[{I|L}P]VEEH{M(Oxidation (M))|F}QT{I|L};{I|L}PVEEH{M(Oxidation (M))|F}QT{I|L};[{I|L}P]D{I|L}EH{M(Oxidation (M))|F}[AG]T{I|L};[{I|L}P]VEEH{M(Oxidation (M))|F}[AG]T{I|L};{I|L}PVE{[{M(Oxidation (M))|F}H]|[RQ]}EQT{I|L};[YT][KP]{[QS]|[NT]}{M(Oxidation (M))|F}QT{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]{M(Oxidation (M))|F}QT{I|L};{I|L}PVQ{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}T]{[QS]|[NT]}{M(Oxidation (M))|F}QT{I|L} 4.4669;4.3615;3.8126;3.7105;3.6052;3.1707;2.4521;2.3867;2.1728;2.0583 -;+;+;-;-;-;-;-;-;- + 935 NaN NaN 150626.2 NaN 8694 2910 11604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11607 54.692 NaN 416230 35 0 67570 0.262 + 27386 SYSQSSNLF 9 68 516.7355161601087 1031.4564793870172 2 516.7356567382812 MULTI HCD FTMS 0 0 0 11604 175539.515625 1 0 0 3 Unmodified _SYSQSSNLF_ ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF 78.06048673739656 0.006479972202176041 2 {[{M(Oxidation (M))|F}C]|[YS]}SQSSN{I|L}{M(Oxidation (M))|F} 9 0 + 82.59 0 0 8.0072 8.0072 92.067 0 0 0 4.762036441594191 60.199718873656636 4.762036441594191 9.208187539523749 0 2.6861818737241734 0 1.066901560044258 0.4247425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}SQSSN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG]SSN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQSSGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG]SSGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQ[C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQS[WK]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG][C(Carbamidomethyl (C))K]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[AG]S[WK]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KT]SQDG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}SQ[KT]DG{M(Oxidation (M))|F} 8.0072;7.1144;7.1144;5.8141;4.9949;4.9522;4.097;4.0543;3.8835;3.3809 +;-;-;-;-;-;-;-;-;- + 529 NaN NaN 159861.7 NaN 8695 2910 11604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11608 54.696 NaN 148950 35 0 27795 0.261 -1 0 50 437.235052705695 436.227776239095 1 439.2406311035156 MULTI HCD FTMS 0 0 0 11604 84665.703125 0.10970244842778999 14 -0.3132057189941406 4 NaN NaN 2 [{I|L}T]G{M(Oxidation (M))|F} 4 -1 [{I|L}T] + + 14.993 1.7339 0.80977 3.4369 3.4369 60.411 0 0 0 0 11.497972112521921 0 0 0 0.3054621874040891 0 0 0 [{I|L}T]G{M(Oxidation (M))|F} 3.4369 - 16 + NaN NaN 103485.6 NaN 8696 2910 11604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11609 54.699 NaN 147530 35 0 8830.3 0.261 + 35712 YYLHVQSML 9 59 585.2864498741383 1168.5583468150764 2 585.2871704101562 MULTI HCD FTMS 0 0 0 11604 31097.70703125 0.38591074690598104 -1 0.019443511962890625 5 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ ENSG00000176994|ENST00000406438|SMCR8 47.748688679222035 0.03472022231463587 2 NQS{M(Oxidation (M))|F}{I|L} 5 5 53.003 0 0 4.5358 0 0 561.2819263438755 0 561.2819263438755 0 15.568109453757657 0 0 0 1 0 0.805462187404089 0 NQS{M(Oxidation (M))|F}{I|L} 4.5358 - 134 NaN NaN 115072.5 NaN 8697 2910 11604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11611 54.704 NaN 443860 35 0 80625 0.326 + 27315 SYQKVMALW 9 68 571.2892037872349 1140.5638546412697 2 571.2892456054688 MULTI HCD FTMS 0 0 0 11610 186130.9375 0.8183252853279136 -1 0.01955413818359375 1 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 79.59630418116434 0.005983006570063981 2 {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W 9 0 + 75.601 0 0 6.6284 6.6284 89.631 0 0 0 3.1947654920421087 3.1947654920421087 3.1947654920421087 9.208187539523749 0 3.004432191740108 0 0.3494850021680094 0 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}VK{[CA]|SS}W;{[CT]|[{M(Oxidation (M))|F}G]}{[CA]|SS}KV{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}K{[CA]|SS}V{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}QKS{[ET]|[MV]}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K]{I|L}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}V{[CA]|SS}V{[QS]|[NT]};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KS{[ET]|[MV]}{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}QK[WM]{I|L}[VS] 6.6284;5.821;5.4286;5.0327;4.5059;3.9136;3.6298;3.1521;3.1062;3.0961 +;-;-;-;-;-;-;-;-;- + 567 NaN NaN 163539.1 NaN 8698 2911 11610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11612 54.708 NaN 538980 35 0 22875 0.261 + 6019 FPDRIMNTF 9 92 578.77670921455 NaN 0 578.7766723632812 PEAK HCD FTMS 0 0 0 11610 240384.125 0.09727105120066767 -27 0.5332489013671875 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 88.36371040165146 0.0002533634040039558 2 TN{M(Oxidation (M))|F}RTA 6 7 33.401 0 0 2.8905 0 0 165.08303385654705 297.1109713190063 462.19400517555334 0 0 0 0 0 1.180884548956689 0 0 0.4247425010840047 TN{M(Oxidation (M))|F}RTA 2.8905 - 163 + NaN NaN 167164.8 NaN 8699 2911 11610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11613 54.712 NaN 247430 35 0 23345 0.261 + 17958 MITDLEERL 9 62 568.2867272456716 1134.5589015581431 2 568.2860107421875 MULTI HCD FTMS 0 0 0 11610 71311.6640625 0.06314505141760919 40 -1.0052528381347656 3 Oxidation (M) _M(Oxidation (M))ITDLEERL_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant 57.24910588100465 0.021429789259086996 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L} 9 0 + 73.51 0 0 6.4792 6.4792 92.437 0 0 0 7.5743832831149405 62.417665879116626 7.5743832831149405 22.175390846596486 0 2.6677353201839438 2 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TD{I|L}EER{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{I|L}DTE{I|L};{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}[{M(Oxidation (M))|F}V]TE{I|L};{[QN]|[E{I|L}]|[KN]}[KQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TE{I|L} 6.4792;4.5246;1.8152;1.66 +;-;-;- + 268 NaN NaN 136517 NaN 8700 2911 11610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11614 54.715 NaN 276200 35 0 30401 0.261 + 25199 SANLEEVTM 9 58 497.23103593290296 992.4475189326059 2 497.2314758300781 MULTI HCD FTMS 0 0 0 11610 89012.375 0.5495185725152741 -3 0.06842422485351562 4 Unmodified _SANLEEVTM_ ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK 49.55428908609986 0.03219431099695407 2 {[TV]|[{I|L}S]}{[QG]|[NA]}EEVTM 9 2 + 65.053 0 0 6.5548 6.5548 93.306 0 0 0 2.9305997461732147 44.568715476696354 2.9305997461732147 31.959318001539422 0 1.805462187404089 0 0.7614393726401688 0.75 {[TV]|[{I|L}S]}{[QG]|[NA]}EEVTM;{[QG]|[NA]}{[TV]|[{I|L}S]}EEVTM;{[TV]|[{I|L}S]}{[QG]|[NA]}EHHW 6.5548;3.3346;1.4064 -;-;- 71 NaN NaN 128594.6 NaN 8701 2911 11610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11615 54.719 NaN 72747 35 0 5964.8 0.261 + 17717 MAVIDGNVM 9 41 483.2253310532273 NaN 0 483.22515869140625 PEAK HCD FTMS 0 0 0 11610 53807.6171875 0.4440351474623164 11 -0.2512855529785156 5 Oxidation (M) _MAVIDGNVM(Oxidation (M))_ ENSG00000132361|ENST00000651024|CLUH;nc|ENSG00000132361|O75153|CLUH 56.17704186161178 0.03257283130890233 2 {I|L}D[NG]V 5 4 35.432 0 0 3.6738 0 0 301.14537245918126 162.02252237333406 463.16789483251534 0 0 0 0 0 2.3494850021680094 0 0 0.75 + {I|L}D[NG]V 3.6738 + + 31 NaN NaN 116800 NaN 8702 2911 11610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11616 54.722 NaN 136660 35 0 10215 0.261 -1 0 44 623.5233871952593 NaN 0 623.7235717773438 PEAK HCD FTMS 0 0 0 11610 21017.95703125 0.7545232012578105 3 -0.0685882568359375 6 NaN NaN 2 T 1 -1 0.9691 0 0 0.077837 0 0 499.9004598379809 641.0528048150999 1140.9532646530809 0 0 0 0 0 0 0 0 0 T 0.077837 - 1 + NaN NaN 118308.3 NaN 8703 2911 11610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11618 54.727 NaN 3393700 35 0 620220 0.327 + 24647 RYLQTLTTI 9 85 554.8214699485749 1107.6283869639497 2 554.8218994140625 MULTI HCD FTMS 0 0 0 11617 1939630.625 1 0 0 1 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 117.76058876431921 0.001675465467887476 2 [YR]{I|L}QT{I|L}TT{I|L} 9 0 + 87.215 0 0 7.874 7.874 89.558 0 0 0 2.5553589614498406 19.454029456232874 2.5553589614498406 5.778777176623038 0 2.4802046884880937 0 1.6549471895720984 0 + + [YR]{I|L}QT{I|L}TT{I|L};[PS]{I|L}{I|L}HN{I|L}TT{I|L};[YR]{I|L}QT{I|L}T{I|L}T;[PS]{I|L}{I|L}HQVTT{I|L};[YR]{I|L}[AG]T{I|L}TT{I|L};[{I|L}T][VP]HN{I|L}TT{I|L};[YR]{I|L}QTT{I|L}T{I|L};[PS]{I|L}{I|L}HN{I|L}T{I|L}T;[{I|L}T][VP]HQVTT{I|L};[PS]{I|L}{I|L}HGG{I|L}TT{I|L} 7.874;7.3523;7.2223;7.1203;7.0427;6.8945;6.8393;6.7006;6.6625;6.5249 +;-;-;-;-;-;-;-;-;- + 8030 NaN NaN 603496.1 NaN 8704 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11619 54.731 NaN 463000 35 0 56838 0.261 -1 KYMYFTVVM 9 72 607.2849257552336 1212.5552985772672 2 607.2857666015625 MULTI HCD FTMS 0 0 0 11617 164175.796875 0.7455496919314959 -2 0.042385101318359375 2 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 39.94969957227396 0.06557568441294001 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[Y{M(Oxidation (M))|F}]TVV{M(Oxidation (M))|F} 9 -1 + 54.869 0 0 4.5251 4.5251 90.305 0 0 0 1.1831747353331679 17.618252904652465 1.1831747353331679 36.02182518111363 0 1.9247425010840047 0 0.6747425010840047 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[Y{M(Oxidation (M))|F}]TVV{M(Oxidation (M))|F};NP[RP][Y{M(Oxidation (M))|F}]Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.5251;1.5543 -;- 286 NaN NaN 172229.5 NaN 8705 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11620 54.735 NaN 607060 35 0 87054 0.262 -1 0 75 514.2445374461269 1026.4745219590536 2 514.244873046875 MULTI HCD FTMS 0 0 0 11617 165657.65625 0.5912869075734164 -3 0.06182861328125 3 NaN NaN 2 VS{I|L} 3 -1 38.94 0 0 3.7936 0 0 709.2801000114536 0 709.2801000114536 0 18.64970648723208 0 0 0 0.9247425010840047 0 0.3494850021680094 0 VS{I|L} 3.7936 - 191 NaN NaN 177710.7 NaN 8706 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11621 54.738 NaN 217450 35 0 29559 0.261 + 26015 SPEEIDAQL 9 58 501.24310530133044 1000.4716576694609 2 501.2431335449219 MULTI HCD FTMS 0 0 0 11617 61142.90625 0.03088572892936267 16 -0.3892059326171875 4 Unmodified _SPEEIDAQL_ ENSG00000106244|ENST00000350498|PDAP1 39.94969957227396 0.06557568441294001 2 {I|L}DAQ{I|L} 5 4 45.718 0 0 4.5697 0 0 442.16771132636876 0 442.16771132636876 0 32.22357194224834 0 0 0 1.305462187404089 0 0.4247425010840047 0 + {I|L}DAQ{I|L} 4.5697 + + 109 NaN NaN 127024.7 NaN 8707 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11622 54.741 NaN 609300 35 0 124460 0.261 + 10705 IPYGERITL 9 85 531.3027934486513 1060.5910339641025 2 531.3036499023438 MULTI HCD FTMS 0 0 0 11617 141924.984375 0.39918706147187855 -6 0.13341140747070312 5 Unmodified _IPYGERITL_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 45.739877483867886 0.03899552410870734 2 {I|L}PYGER{I|L}T{I|L} 9 0 + 64.596 0 0 6.0905 6.0905 89.721 0 0 0 44.92997228841941 4.814353294183718 4.814353294183718 10.37397141946937 0 1.645701298008806 1.6989700043360187 0.5752574989159953 0.3054621874040891 + + {I|L}PYGER{I|L}T{I|L};{I|L}PYG[{I|L}T]RE{I|L};{[{M(Oxidation (M))|F}D]|MM}VQ{[NV]|[RG]}VK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}TP{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VQ[KA]Q{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}PT{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}P{I|L}T{I|L};{[{M(Oxidation (M))|F}D]|MM}V[AG]{[NV]|[RG]}VK{I|L};[YV]V[R{I|L}]{[DS]|[MA]|[CV]|TT}P{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}T{I|L}P{I|L} 6.0905;5.1124;1.3994;0.79145;0.73677;0.65367;0.564;0.53118;0.50464;0.24906 +;-;-;-;-;-;-;-;-;- + 558 + NaN NaN 182444.3 NaN 8708 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11623 54.745 NaN 111770 35 0 19049 0.262 -1 0 39 424.08155185080113 NaN 0 424.0816650390625 PEAK HCD FTMS 0 0 0 11617 70258.6875 0.6023839316807468 -53 1.1475067138671875 6 NaN NaN 2 C 1 -1 3.4949 0 0 0.41303 0 0 466.114262293596 273.9930819147094 740.1073442083054 0 0 0 0 0 0 0 0 0 C 0.41303 - 1 + NaN NaN 115082.2 NaN 8709 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11624 54.748 NaN 623370 35 0 129470 0.261 -1 0 78 493.76104858191513 985.5075442306303 2 493.7610168457031 MULTI HCD FTMS 0 0 0 11617 165855.71875 0.09543138020534589 -6 0.13341140747070312 7 NaN NaN 2 TQNDVS{I|L} 7 -1 70.693 0 0 7.1733 0 0 210.13665969062657 0 210.13665969062657 0 50.110082252287356 0 0 0 1.774227503252014 0 0.7742275032520141 0.4247425010840047 TQNDVS{I|L} 7.1733 - 675 NaN NaN 175506.9 NaN 8710 2912 11617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11626 54.753 NaN 1297800 35 0 159850 0.327 + 7359 FVDPNGKISL 10 109 545.3004724036509 1088.5863918741018 2 545.3008422851562 MULTI HCD FTMS 0 0 0 11625 597712.4375 0.7756623168503924 -1 0.02618408203125 1 Unmodified _FVDPNGKISL_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 89.60864043982822 0.0010324512941143173 2 [{M(Oxidation (M))|F}V]DPNGK{I|L}S{I|L} 10 0 + 77.437 0 0 7.1135 7.1135 91.9 0 0 0 11.989700043360187 13.754675911389555 11.989700043360187 11.989700043360187 0 2.548455006504028 1.5228787452803376 0.5629529932484498 0.25 + + [{M(Oxidation (M))|F}V]DPNGK{I|L}S{I|L};[YT]PPNGK{I|L}S{I|L};{M(Oxidation (M))|F}VDPNGK{I|L}S{I|L};{M(Oxidation (M))|F}VDPGGGK{I|L}S{I|L};[DV]{M(Oxidation (M))|F}PNGK{I|L}S{I|L};[DV]{M(Oxidation (M))|F}PGGGK{I|L}S{I|L};[KG][NP]D[{M(Oxidation (M))|F}V]{I|L}S{I|L};[KG][NP]D{I|L}[{M(Oxidation (M))|F}V]S{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QV]|[N{I|L}]|[RA]|[KV]}{[WT]|[RM]}{I|L}S{I|L};[KG][NP]D{I|L}S[{M(Oxidation (M))|F}V]{I|L} 7.1135;6.0121;5.85;5.0081;3.7256;2.8837;2.4374;1.452;1.422;0.47147 +;-;+;-;-;-;-;-;-;- + 1176 NaN NaN 285471.8 NaN 8711 2913 11625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11627 54.757 NaN 435390 35 0 31696 0.261 + 9768 HYILHNSFF 9 72 589.2930776435726 1176.571602353945 2 589.2933959960938 MULTI HCD FTMS 0 0 0 11625 138545.203125 0.09445744870154009 28 -0.6840362548828125 2 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 96.11092074494114 0.00436583732602279 2 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 87.418 0 0 7.4299 7.4299 91.054 0 0 0 9.8725709897451 74.85531242661757 9.8725709897451 9.208187539523749 0 1.610924374808178 1.5228787452803376 0.9247425010840047 0 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}[KS][YV]PH{M(Oxidation (M))|F};{[WN]|[YH]}[KS][YV]P{M(Oxidation (M))|F}H 7.4299;6.6473;6.0584;4.9994;2.4626;1.6994 +;-;-;-;-;- + 198 NaN NaN 155766.5 NaN 8712 2913 11625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11628 54.761 NaN 172090 35 0 10793 0.261 -1 YPESESIMM 9 47 551.7257351767972 NaN 0 551.7256469726562 PEAK HCD FTMS 0 0 0 11625 31613.455078125 0.22299495763587518 18 -0.435089111328125 3 Oxidation (M) _YPESESIM(Oxidation (M))M_ ENSG00000162654|ENST00000355754|GBP4 21.74664581756881 0.17567436591797916 2 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}Y 4 -1 15.234 0 0 1.3831 0 0 149.05472946307685 439.1562899225219 588.2110193855988 0 0 0 0 0 1 0 0.7302046884880937 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}Y 1.3831 - 10 + NaN NaN 124190.1 NaN 8713 2913 11625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11629 54.764 NaN 57691 35 0 3691.5 0.261 + -1 PMWTRDMYL 9 28 622.7774547161445 NaN 0 622.3641967773438 PEAK HCD FTMS 0 0 0 11625 17370.279296875 1 0 0 4 2 Oxidation (M) _PM(Oxidation (M))WTRDM(Oxidation (M))YL_ REV__ENSG00000225190|ENST00000430334|PLEKHM1;REV__ENST00000582035.1_1_17:43530658-43531768:-|nuORF;REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF 0.5247636613948944 0.2927039108006614 2 T 1 -1 3.4949 0 0 0.28104 0 0 539.6524303289701 599.8011292549079 1139.453559583878 0 0 0 0 0 0 0 0 0 T 0.28104 + + 1 + NaN NaN 90443.6 NaN 8714 2913 11625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11630 54.768 NaN 183750 35 0 27637 0.262 + 32916 YAEMLYPY 8 57 525.2360494767858 NaN 0 525.2368774414062 PEAK HCD FTMS 0 0 0 11625 9866.4296875 0.33818304900656787 1 -0.019573211669921875 5 Unmodified _YAEMLYPY_ REV__ENSG00000021488|ENST00000023064|SLC7A9 11.114462752807354 0.38822285293237185 2 CA{I|L} 3 -1 6.0308 0 0 0.5752 0 0 130.97037668619015 627.3357760381447 758.3061527243349 0 0 0 0 0 0 0 0 0 CA{I|L} 0.5752 - 31 + NaN NaN 127753.7 NaN 8715 2913 11625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11632 54.772 NaN 647970 35 0 81354 0.327 + 28157 TIVNILTNR 9 96 522.3139883245171 1042.6134237158342 2 522.314208984375 MULTI HCD FTMS 0 0 0 11631 308235.8125 0.7618376827946209 5 -0.10416412353515625 1 Unmodified _TIVNILTNR_ ENSG00000182718|ENST00000451270|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|1|fusion;RORA-ANXA2|2|fusion 121.34585337138759 0.001129813327125052 2 [{I|L}T]VN{I|L}{I|L}T[RN] 9 0 + 97.129 0 0 9.3159 9.3159 93.672 0 0 0 84.910298160883 7.158554728698633 7.158554728698633 9.208187539523749 0 2.4489700043360187 2 0.5629529932484498 0.9896518287104438 + + [{I|L}T]VN{I|L}{I|L}T[RN];[{I|L}T]VGG{I|L}{I|L}T[RN];[{I|L}T]VN{I|L}[RN][{I|L}T];[{I|L}T]P[KT]{I|L}T[RN];{[NV]|[RG]}[{I|L}T]{I|L}{I|L}T[RN];[{I|L}T]VGG{I|L}[RN][{I|L}T];[TP][KT]{I|L}{I|L}T[RN];[TP]{I|L}[KT]{I|L}T[RN];[{I|L}P]T[KT]{I|L}T[RN];[{I|L}T]P[KT][RN][{I|L}T] 9.3159;8.4327;4.879;4.7571;3.8034;3.7328;3.3019;1.6889;1.6492;1.5654 +;-;-;-;-;-;-;-;-;- + 626 + NaN NaN 188724.1 NaN 8716 2914 11631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11633 54.777 NaN 413450 35 0 69037 0.261 + 27316 SYQKVMALW 9 65 571.2892037872349 1140.5638546412697 2 571.289306640625 MULTI HCD FTMS 0 0 0 11631 178957.875 0.786788892206875 2 -0.045703887939453125 2 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 57.72198328787511 0.020768266150574023 2 {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W 9 0 + 68.867 0 0 6.038 6.038 88.6 0 0 0 61.87707207549607 10 10 9.208187539523749 0 2.805462187404089 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{M(Oxidation (M))|F}A{I|L}W;{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{[CA]|SS}KV{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}K{[CA]|SS}V{M(Oxidation (M))|F}A{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}K{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}[C(Carbamidomethyl (C))K]{I|L}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}A{M(Oxidation (M))|F}V{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}[C(Carbamidomethyl (C))K]{I|L}[VS];{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}VK{[CA]|SS}[VS];{[{M(Oxidation (M))|F}C]|[YS]}QKV{[RE]|[WV]}[MT] 6.038;5.2306;4.7224;4.1956;3.3434;3.3233;3.2539;1.763;1.478;1.2106 +;-;-;-;-;-;-;-;-;- + 323 + NaN NaN 159579 NaN 8717 2914 11631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11634 54.78 NaN 390650 35 0 39567 0.262 + 18260 MPDVDLHL 8 68 478.23150982867156 954.4484667241431 2 478.2312927246094 MULTI HCD FTMS 0 0 0 11631 171339.59375 0.2781329445836975 17 -0.4155158996582031 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 67.406 0 0 7.0623 7.0623 87.517 0 0 0 4.124628150806373 4.124628150806373 4.124628150806373 4.124628150806373 0 2.305462187404089 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};{[ES]|[DT]|[{I|L}C]}S[VG]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L} 7.0623;6.6301;3.9286;1.4817;0.62023 +;+;-;-;- + 181 NaN NaN 155540.1 NaN 8718 2914 11631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11635 54.784 NaN 213880 35 0 9932.4 0.261 + 28487 TPPYADPSL 9 51 480.7371058339494 959.4596587346988 2 480.7370300292969 MULTI HCD FTMS 0 0 0 11631 30656.265625 0.5823843372531955 -4 0.08814239501953125 4 Unmodified _TPPYADPSL_ ENSG00000173039|ENST00000406246|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA 19.256988751693697 0.19398022840297344 2 D[PS]{I|L} 4 5 27.747 0 0 2.892 0 0 529.2554798810562 0 529.2554798810562 0 20.757659435244733 0 0 0 0.8494850021680094 0 0.3054621874040891 0 + D[PS]{I|L} 2.892 + + 27 NaN NaN 112291 NaN 8719 2914 11631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11636 54.787 NaN 84935 35 0 6659.8 0.261 + 27721 TASIVEQSL 9 49 474.25584463359417 946.4971363339884 2 474.256103515625 MULTI HCD FTMS 0 0 0 11631 5432.68017578125 0.022604491677807738 16 -0.3959159851074219 5 Unmodified _TASIVEQSL_ ENSG00000165169|ENST00000378578|DYNLT3 8.155526934196011 0.2891920862272901 2 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 3 7 12.76 0 0 1.3481 0 0 0 571.2739962213499 571.2739962213499 10.285371682087218 0 0 0 0 0.3807196863200844 0 0 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 1.3481 - 7 + NaN NaN 93774.3 NaN 8720 2914 11631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11638 54.792 NaN 865900 35 0 112200 0.326 + 13918 KYQIINEEF 9 75 592.3032232832094 1182.5918936332187 2 592.3035278320312 MULTI HCD FTMS 0 0 0 11637 511680.59375 0.2459196521861582 -5 0.10767745971679688 1 Unmodified _KYQIINEEF_ ENSG00000163755|ENST00000296051|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3 133.0521902211835 0.0004198702180815479 2 [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F} 9 0 [YK] + + 87.388 2.2185 0.76195 7.3895 7.3895 66.355 0 0 0 0 68.01590917805326 0 0 0 2.5994850021680094 0 1.5189301784845295 0.3252574989159953 + + [YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F} 7.3895 + + 839 + NaN NaN 218368.6 NaN 8721 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11639 54.796 NaN 520380 35 0 60623 0.263 + 33921 YLQDNHLFFSL 11 64 466.23464886830163 1395.682117205105 3 466.23468017578125 MULTI HCD FTMS 0 0 0 11637 216552 0.7886874205085744 2 -0.035785675048828125 2 Unmodified _YLQDNHLFFSL_ REV__ENSG00000136011|ENST00000388887|STAB2;REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant 19.986897341741983 0.28293591992651296 2 YS{I|L} 3 -1 43.94 0 0 3.1483 0 0 1014.4905385497794 0 1014.4905385497794 0 35.20303756120384 0 0 0 1.3494850021680094 0 0.4247425010840047 0 YS{I|L} 3.1483 - 53 NaN NaN 158163.5 NaN 8722 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11640 54.8 NaN 258570 35 0 46426 0.261 + 7824 FYQPKIQQF 9 67 599.8161857789761 1197.617818624752 2 599.81640625 MULTI HCD FTMS 0 0 0 11637 94597.46875 0.49201074709471926 -3 0.0652923583984375 3 Unmodified _FYQPKIQQF_ chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI 64.23631603340823 0.01165516075559909 2 QQ{M(Oxidation (M))|F} 3 6 31.867 0 0 2.6609 0 0 776.4220448224625 0 776.4220448224625 0 10.172203223519531 0 0 0 0.3807196863200844 0 0 0.4247425010840047 + QQ{M(Oxidation (M))|F} 2.6609 + + 128 NaN NaN 148152.5 NaN 8723 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11641 54.803 NaN 215810 35 0 18908 0.261 -1 LEGLPRTPMV 10 67 564.8076227481029 1127.6006925630056 2 565.2889404296875 MULTI HCD FTMS 0 0 0 11637 6291.12158203125 0.9139659937169797 -1 0.019535064697265625 4 Oxidation (M) _LEGLPRTPM(Oxidation (M))V_ nc|ENSG00000167566|Q9HCH0-2|NCKAP5L 6.2057823575117 0.44245551207394906 2 {M(Oxidation (M))|F}VAW[KQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 8 -1 18.421 0 0 1.6337 0 0 116.11602331395359 0 116.11602331395359 0 7.9638846195255315 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}VAW[KQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.6337 - 85 + NaN NaN 121634.6 NaN 8724 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11642 54.807 NaN 322050 35 0 22649 0.261 + 18598 MVSDEYEQL 9 67 557.2419168286489 1112.4692807240976 2 557.2422485351562 MULTI HCD FTMS 0 0 0 11637 37777.203125 0.09607892413776221 -6 0.1271209716796875 5 Unmodified _MVSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 51.629811660486645 0.02929079705179888 2 {[QN]|[E{I|L}]|[KN]}EY[CS]EQ{I|L} 9 6 + 46.391 0 0 4.1701 4.1701 61.152 0 0 0 3.031505892858135 32.094465368295886 3.031505892858135 0 0 1 0 0.7059771852360797 0 {[QN]|[E{I|L}]|[KN]}EY[CS]EQ{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YEQ{I|L};{[QN]|[E{I|L}]|[KN]}EY[CS]E[AG]{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YADA{I|L};{[QN]|[E{I|L}]|[KN]}EY[CS]ADA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[{M(Oxidation (M))|F}C]|[YS]}[VP]EQ{I|L};{[QN]|[E{I|L}]|[KN]}EY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DA{I|L} 4.1701;4.1701;3.3424;3.3424;2.3007;2.3007;1.7177;1.2641 -;-;-;-;-;-;-;- 198 NaN NaN 138067.3 NaN 8725 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11643 54.81 NaN 161820 35 0 30876 0.261 + 33940 YLRVVLLCA 9 60 525.3125761534758 NaN 0 525.3001708984375 PEAK HCD FTMS 0 0 0 11637 7137.61962890625 0.7949879983710677 -1 0.019535064697265625 6 Unmodified _YLRVVLLCA_ ENSG00000177938|ENST00000317658|CAPZA3 9.347437153973935 0.2499504662953367 2 {M(Oxidation (M))|F}{I|L}[HC]{I|L}A 6 6 8.9009 0 0 0.84883 0 0 130.19227769582022 231.07666956119377 361.268947257014 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}[HC]{I|L}A 0.84883 - 32 + NaN NaN 112314.5 NaN 8726 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11644 54.813 NaN 73812 35 0 9421.5 0.261 -1 0 46 475.07655626710334 NaN 0 475.06951904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 Y 1 -1 5.4846 0 0 0.57845 0 0 97.68806366110717 684.368893902756 782.0569575638632 0 0 0 0 0 0 0 0 0 Y 0.57845 - 6 + NaN NaN 90867.2 NaN 8727 2915 11637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11646 54.818 NaN 420460 35 0 26490 0.327 + -1 TVRCCIVT 8 70 504.75228845910425 1007.4900239850085 2 504.7525634765625 MULTI HCD FTMS 0 0 0 11645 190477.984375 0.764652451887565 -4 0.091461181640625 1 2 Carbamidomethyl (C) _TVRC(Carbamidomethyl (C))C(Carbamidomethyl (C))IVT_ REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant;REV__ENSG00000104043|ENST00000284509|ATP8B4;REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF;REV__ENST00000559726.5_1_15:50152393-50311102:-|nuORF;REV__ENST00000560161.1_1_15:50178110-50190397:-|nuORF;REV__ENST00000561385.5_1_15:50189347-50194027:-|nuORF 24.020572477871973 0.4170589785259073 2 TP{I|L}NQDV 7 -1 64.009 0 0 6.3533 0 0 0 237.08522974185783 237.08522974185783 32.81102639377799 0 0 0 0 1.1989700043360187 1.3979400086720375 0.3494850021680094 0 TP{I|L}NQDV 6.3533 - 189 + NaN NaN 152646 NaN 8728 2916 11645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11647 54.823 NaN 120580 35 0 10246 0.261 -1 PLHGPMRF 8 49 485.7499235997739 NaN 0 485.7496337890625 PEAK HCD FTMS 0 0 0 11645 25579.259765625 0.8837396751752977 1 -0.009616851806640625 2 Oxidation (M) _PLHGPM(Oxidation (M))RF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 8.593279151180031 0.38822285293237185 2 S 1 -1 2.2185 0 0 0.22883 0 0 414.2375048149791 465.19614587955317 879.4336506945323 0 0 0 0 0 0 0 0 0 S 0.22883 - 4 + NaN NaN 99854 NaN 8729 2916 11645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11649 54.828 NaN 919810 35 0 51828 0.327 + 6020 FPDRIMNTF 9 111 578.77670921455 NaN 0 578.7767333984375 PEAK HCD FTMS 0 0 0 11648 436767.46875 0.17673725673676358 -21 0.3679351806640625 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 143.21322497773306 2.8237506069208265E-14 2 PDR{I|L}{M(Oxidation (M))|F}NT 7 2 64.853 0 0 5.6123 0 0 147.0705119206189 162.0560701959594 309.12658211657833 0 0 0 0 0 3.0114393726401687 0 2.360924374808178 0.5501648626366046 + PDR{I|L}{M(Oxidation (M))|F}NT 5.6123 + + 733 + NaN NaN 234429.2 NaN 8730 2917 11648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11650 54.832 NaN 461110 35 0 42713 0.262 + 18216 MPDLPEKL 8 69 471.7519921809124 941.4894314286248 2 471.7518310546875 MULTI HCD FTMS 0 0 0 11648 279542.34375 0.4800914590261824 10 -0.251983642578125 2 Unmodified _MPDLPEKL_ nc|ENSG00000130731|Q96S19-4|METTL26;nc|ENSG00000130731|Q96S19-6|METTL26 39.94969957227396 0.23157582791120707 2 MPD{I|L}[EP][K{I|L}] 8 0 + 66.177 0 0 7.029 7.029 95.299 0 0 0 52.68237211568909 7.715299873086607 7.715299873086607 66.17722213736918 0 1.6307196863200843 1.3979400086720375 0.3494850021680094 0 + + MPD{I|L}[EP][K{I|L}] 7.029 + + 109 + NaN NaN 168492 NaN 8731 2917 11648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11651 54.836 NaN 371300 35 0 26972 0.261 + 14393 LEHVMPESL 9 75 527.7646234775762 NaN 0 527.7739868164062 PEAK HCD FTMS 0 0 0 11648 17435.666015625 1 0 0 3 Unmodified _LEHVMPESL_ REV__ENSG00000122481|ENST00000370202|RWDD3;REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF;REV__nc|ENSG00000122481|Q9Y3V2-2|RWDD3;REV__nc|ENSG00000122481|Q9Y3V2-3|RWDD3;REV__nc|ENSG00000122481|Q9Y3V2-4|RWDD3 15.847184025352803 0.21527282152051216 2 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 6 -1 25.718 0 0 2.4412 0 0 131.0754340971236 215.10340295963127 346.1788370567549 0 0 0 0 0 0 0 0.7302046884880937 0 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 2.4412 - 122 + NaN NaN 144302.6 NaN 8732 2917 11648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11652 54.839 NaN 424030 35 0 58717 0.261 + 27317 SYQKVMALW 9 69 571.2892037872349 1140.5638546412697 2 571.2894897460938 MULTI HCD FTMS 0 0 0 11648 159581.21875 0.7015993586051213 5 -0.12737655639648438 4 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 66.45667989310934 0.010234776021261575 2 GA{I|L}W 4 6 43.8 0 0 3.8402 0 0 695.3303168988854 0 695.3303168988854 0 21.4314671877103 0 0 0 1.4247425010840047 0 0 0 GA{I|L}W 3.8402 - 255 + NaN NaN 155393.7 NaN 8733 2917 11648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11653 54.842 NaN 332720 35 0 38093 0.261 + 35778 YYMKDLPTSF 10 55 640.7968467141262 1279.5791404950523 2 640.7964477539062 MULTI HCD FTMS 0 0 0 11648 74284.453125 0.6805565406944598 -4 0.07489395141601562 5 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 49.52724829834842 0.07950882623896251 2 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 10 0 + 58.891 0 0 4.6024 4.6024 91.175 0 0 0 23.92520157121153 19.493311024969188 19.493311024969188 58.89104854598001 0 2.048455006504028 2 1.0501648626366045 0 + + YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 4.6024 + + 77 + NaN NaN 140831.2 NaN 8734 2917 11648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11654 54.845 NaN 110160 35 0 12967 0.262 + 4349 EVYDIAFSR 9 41 550.2748846552968 NaN 0 550.2748413085938 PEAK HCD FTMS 0 0 0 11648 21992.275390625 0.49447108010056956 1 -0.022586822509765625 6 Unmodified _EVYDIAFSR_ ENSG00000136485|ENST00000614556|DCAF7 4.897010918128616 0.2715166107592903 2 {M(Oxidation (M))|F}A{I|L} 3 8 14.693 0 0 1.3375 0 0 279.15614030493094 485.16803919010005 764.324179495031 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A{I|L} 1.3375 - 15 + NaN NaN 108409.3 NaN 8735 2917 11648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11656 54.85 NaN 598980 35 0 37372 0.327 + 27379 SYSPQAFKF 9 86 537.7663711698357 1073.5181894064713 2 537.7666015625 MULTI HCD FTMS 0 0 0 11655 131665.96875 0.8575100726590996 -1 0.022586822509765625 1 Unmodified _SYSPQAFKF_ ENSG00000131023|ENST00000543571|LATS1;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;nc|ENSG00000131023|O95835-2|LATS1 72.96794272382148 0.008127836904478181 2 {[{M(Oxidation (M))|F}C]|[YS]}S[QP]A{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 42.969 2.8432 1.1368 4.0026 4.0026 60.971 0 0 0 0 32.7346448708586 0 0 0 2.079689690656103 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}S[QP]A{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4.0026 + + 351 + NaN NaN 189823.7 NaN 8736 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11657 54.855 NaN 329100 35 0 23000 0.261 + 14394 LEHVMPESL 9 88 527.7646234775762 NaN 0 527.7733154296875 PEAK HCD FTMS 0 0 0 11655 12063.4814453125 0.6918853248566353 1 -0.026256561279296875 2 Unmodified _LEHVMPESL_ REV__ENSG00000122481|ENST00000370202|RWDD3;REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF;REV__nc|ENSG00000122481|Q9Y3V2-2|RWDD3;REV__nc|ENSG00000122481|Q9Y3V2-3|RWDD3;REV__nc|ENSG00000122481|Q9Y3V2-4|RWDD3 15.847184025352803 0.21527282152051216 2 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 6 -1 28.971 0 0 2.7499 0 0 131.07505226590428 215.10347925357658 346.1785315194809 0 0 0 0 0 0 0 1.055462187404089 0 SEV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E 2.7499 - 264 + NaN NaN 145812.2 NaN 8737 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11658 54.858 NaN 233990 35 0 26499 0.261 -1 SPCHIEMIL 9 61 529.7536191861368 1057.4926854390735 2 529.7547607421875 MULTI HCD FTMS 0 0 0 11655 57415.46875 0.770702002245038 2 -0.055736541748046875 3 Oxidation (M) _SPCHIEM(Oxidation (M))IL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 16.942295170755138 0.21397866736869717 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 31.867 0 0 3.0134 0 0 666.279100486525 0 666.279100486525 0 24.877203139966326 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.0134 + + 35 NaN NaN 116166.8 NaN 8738 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11659 54.862 NaN 306340 35 0 13264 0.261 -1 QYLLAHSMF 9 61 563.2731714703624 1124.5317900075247 2 563.7572631835938 MULTI HCD FTMS 0 0 0 11655 29893.2265625 1 0 0 4 Oxidation (M) _QYLLAHSM(Oxidation (M))F_ ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-2|FANCA;nc|ENSG00000187741|O15360-3|FANCA 14.838274106304384 0.23215694253501695 2 QTA 3 -1 17.457 0 0 1.5524 0 0 130.12381653655513 691.2364596002561 821.3602761368113 0 0 0 0 0 0 0 0.8494850021680094 0 QTA 1.5524 - 67 + NaN NaN 131259 NaN 8739 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11660 54.865 NaN 213570 35 0 15677 0.261 + 19389 NPESKVFYL 9 67 548.7869539494619 1095.5593549657237 2 548.786865234375 MULTI HCD FTMS 0 0 0 11655 45844.57421875 0.5960662064470897 -2 0.03220367431640625 5 Unmodified _NPESKVFYL_ ENSG00000134308|ENST00000238081|YWHAQ 17.11289562659939 0.2125047172822487 2 Y{I|L} 2 7 21.454 0 0 1.9582 0 0 801.4001300522773 0 801.4001300522773 0 3.0423595621581256 0 0 0 0.5 0 0 0 + Y{I|L} 1.9582 + + 108 NaN NaN 129085.1 NaN 8740 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11661 54.868 NaN 311820 35 0 12951 0.261 + 14059 KYVKILYDF 9 55 594.8364743770965 1187.6583958209928 2 594.8369750976562 MULTI HCD FTMS 0 0 0 11655 43723.03515625 0.3546012286653436 -5 0.09748077392578125 6 Unmodified _KYVKILYDF_ ENSG00000177106|ENST00000318562|EPS8L2;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENST00000527832.5_1_11:724661-726978:+|nuORF;ENST00000531393.5_1_11:721935-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2 11.494710602746466 0.2610445893512368 2 YD{M(Oxidation (M))|F} 3 6 25.177 0 0 2.1199 0 0 744.4923573224625 0 744.4923573224625 0 4.208187539523749 0 0 0 0.5 0 0 0 + YD{M(Oxidation (M))|F} 2.1199 + + 27 NaN NaN 144910.1 NaN 8741 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11662 54.872 NaN 124840 35 0 14672 0.264 -1 FYFFYKCF 8 47 407.8534607526184 1220.5385528580553 3 407.8537292480469 MULTI HCD FTMS 0 0 0 11655 35989.72265625 0.9457668134036674 -2 0.03220367431640625 7 Carbamidomethyl (C) _FYFFYKC(Carbamidomethyl (C))F_ ENST00000370272.8_1_1:93826206-93826275:+|nuORF 7.289230182591677 0.5311777711368266 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.392 0 0 1055.459617166452 0 1055.459617166452 0 13.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.392 + + 5 + NaN NaN 113679.4 NaN 8742 2918 11655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11664 54.877 NaN 920630 35 0 174090 0.327 + 24648 RYLQTLTTI 9 72 554.8214699485749 1107.6283869639497 2 554.82177734375 MULTI HCD FTMS 0 0 0 11663 393424.875 0.20283494698894022 7 -0.16330718994140625 1 Unmodified _RYLQTLTTI_ ENSG00000148175|ENST00000286713|STOM;nc|ENSG00000148175|P27105-2|STOM 59.368380827593164 0.01846506874148156 2 TVQT{I|L}TT{I|L} 8 3 73.353 0 0 6.6225 0 0 232.14204604316564 0 232.14204604316564 0 45.002450535668004 0 0 0 0.7742275032520141 0 1.3494850021680094 0 TVQT{I|L}TT{I|L} 6.6225 - 712 NaN NaN 228565.7 NaN 8743 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11665 54.881 NaN 947070 35 0 261980 0.261 + 10706 IPYGERITL 9 89 531.3027934486513 1060.5910339641025 2 531.3032836914062 MULTI HCD FTMS 0 0 0 11663 342168.40625 0.9624041969844568 1 -0.02947998046875 2 Unmodified _IPYGERITL_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 63.227496030279354 0.01306643085373406 2 {I|L}PYGER{I|L}T{I|L} 9 0 + 77.826 0 0 7.338 7.338 93.57 0 0 0 50.32506144926707 8.95628410553762 8.95628410553762 18.464015683995783 0 2.2104093769761874 1.6989700043360187 0.5554621874040891 0.3054621874040891 + + {I|L}PYGER{I|L}T{I|L};[{I|L}P]YGER{I|L}T{I|L};[{I|L}P]YGERT{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GER{I|L}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GERT{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}ER{I|L}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}ERT{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}TP{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}P{I|L}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{[DS]|[MA]|[CV]|TT}PT{I|L}{I|L} 7.338;5.5971;5.2901;4.4666;4.1596;3.7114;3.4044;2.7603;2.629;2.322 +;+;-;-;-;-;-;-;-;- + 923 + NaN NaN 231261.1 NaN 8744 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11666 54.885 NaN 700440 35 0 77984 0.261 -1 0 93 514.2445374461269 1026.4745219590536 2 514.244873046875 MULTI HCD FTMS 0 0 0 11663 213723.46875 0.7628496730772213 4 -0.10466766357421875 3 NaN NaN 2 VS{I|L} 3 -1 40.005 0 0 3.8973 0 0 709.2787692780884 0 709.2787692780884 0 19.76662449439541 0 0 0 1 0 0.3807196863200844 0 VS{I|L} 3.8973 - 297 NaN NaN 188907.9 NaN 8745 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11667 54.888 NaN 564980 35 0 71740 0.261 + 491 AMAKYMALIK 10 81 570.3208925227458 NaN 0 570.308837890625 PEAK HCD FTMS 0 0 0 11663 9574.3955078125 0.9990488627163662 -1 0.026256561279296875 4 Unmodified _AMAKYMALIK_ ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 6.723162845929126 0.3344301934401713 2 C(Carbamidomethyl (C))NTYP{I|L} 6 8 23.633 0 0 2.0756 0 0 131.1251185605932 256.1661471002563 387.2912656608495 0 0 0 0 0 0 0 0.4247425010840047 0 C(Carbamidomethyl (C))NTYP{I|L} 2.0756 - 307 + NaN NaN 169090.6 NaN 8746 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11668 54.891 NaN 241900 35 0 40826 0.261 -1 KYMYFTVVM 9 49 607.2849257552336 1212.5552985772672 2 607.285888671875 MULTI HCD FTMS 0 0 0 11663 128694.1015625 0.5844213921883699 5 -0.12089920043945312 5 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 39.94969957227396 0.06557568441294001 2 TVV{M(Oxidation (M))|F} 4 -1 54.993 0 0 4.5353 0 0 748.3248625333317 0 748.3248625333317 0 49.41962823435958 0 0 0 1.5 0 0.805462187404089 0 TVV{M(Oxidation (M))|F} 4.5353 + + 72 NaN NaN 124933.9 NaN 8747 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11669 54.895 NaN 555440 35 0 80610 0.261 + 15627 LPEEIREPAL 10 78 583.8241568783716 1165.633760823543 2 583.8244018554688 MULTI HCD FTMS 0 0 0 11663 161994.90625 0.7245549381984404 -2 0.0488433837890625 6 Unmodified _LPEEIREPAL_ ENSG00000117697|ENST00000366977|NSL1;ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 46.0223103267499 0.09314584965737738 2 {I|L}PEE[R{I|L}]E 7 3 76.999 0 0 6.6058 0 0 0 296.16230188541255 296.16230188541255 64.40182918052848 0 0 0 0 2.1989700043360187 1.5228787452803376 0.805462187404089 0 + {I|L}PEE[R{I|L}]E 6.6058 + + 762 + NaN NaN 177244.8 NaN 8748 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11670 54.898 NaN 352070 35 0 17216 0.261 + 14060 KYVKILYDF 9 65 594.8364743770965 1187.6583958209928 2 594.837158203125 MULTI HCD FTMS 0 0 0 11663 68082.3671875 0.5521595417348691 -4 0.08462905883789062 7 Unmodified _KYVKILYDF_ ENSG00000177106|ENST00000318562|EPS8L2;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENST00000527832.5_1_11:724661-726978:+|nuORF;ENST00000531393.5_1_11:721935-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2 43.981846655682396 0.04706587046877104 2 KYVK{I|L}{I|L}YD{M(Oxidation (M))|F} 9 0 + 50.442 0 0 4.2472 4.2472 90.473 0 0 0 30.97804375441612 9.889917747712644 9.889917747712644 50.441993906176776 0 2.059894379144197 0 0 0 + + KYVK{I|L}{I|L}YD{M(Oxidation (M))|F} 4.2472 + + 90 + NaN NaN 152437.7 NaN 8749 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11671 54.901 NaN 89477 35 0 4863.2 0.261 + 5426 FHQYSSLWAL 10 44 626.3113811167893 NaN 0 626.3113403320312 PEAK HCD FTMS 0 0 0 11663 24820.1484375 0.6641639971188011 -1 0.026256561279296875 8 Unmodified _FHQYSSLWAL_ REV__ENST00000601417.1_1_19:53548107-53552264:+|nuORF 1.844237919475145 0.33860587697544825 2 S 1 -1 3.4949 0 0 0.27945 0 0 553.3932567630724 607.1718233697874 1160.5650801328597 0 0 0 0 0 0 0 0 0 S 0.27945 + + 5 + NaN NaN 114125.3 NaN 8750 2919 11663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11673 54.906 NaN 2317500 35 0 564370 0.327 -1 0 74 493.76104858191513 985.5075442306303 2 493.7614440917969 MULTI HCD FTMS 0 0 0 11672 1721941.375 0.9907842990728415 2 -0.049053192138671875 1 NaN NaN 2 {I|L}NQDVS{I|L} 7 -1 74.985 0 0 7.6088 0 0 198.10052687812657 0 198.10052687812657 0 38.69448070049671 0 0 0 2.274227503252014 0 0.805462187404089 0.4247425010840047 {I|L}NQDVS{I|L} 7.6088 - 1065 NaN NaN 440906.8 NaN 8751 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11674 54.911 NaN 1534500 35 0 196660 0.261 + 22305 QPFREAIAL 9 95 522.7953378753259 1043.5761228174517 2 522.79541015625 MULTI HCD FTMS 0 0 0 11672 683464.5 0.291519011300414 -4 0.08794021606445312 2 Unmodified _QPFREAIAL_ ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 65.23502041540118 0.010630085227462206 2 [{I|L}T]VN[WD]{I|L}A 8 7 35.932 0 0 3.4431 0 0 0 128.07220605229728 128.07220605229728 11.801915820410699 0 0 0 0 0.9247425010840047 1.5228787452803376 1.316901560044258 1.5 [{I|L}T]VN[WD]{I|L}A 3.4431 - 864 NaN NaN 323083.8 NaN 8752 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11675 54.914 NaN 2059700 35 0 325550 0.261 + 4983 FAYDGKDYL 9 121 546.255913087507 1090.497273241814 2 546.256103515625 MULTI HCD FTMS 0 0 0 11672 824604.6875 0.20132154354102952 -6 0.13364410400390625 3 Unmodified _FAYDGKDYL_ ENSG00000204592|ENST00000376630|HLA-E 70.33199760932243 0.0089807860198535 2 A{[VA]|[{I|L}G]}DYS{I|L} 7 5 55.608 0 0 5.0994 0 0 353.1581974157536 0 353.1581974157536 0 23.00837419630048 0 0 0 1.3494850021680094 0 0.8882104921644451 0 A{[VA]|[{I|L}G]}DYS{I|L} 5.0994 - 916 NaN NaN 399595 NaN 8753 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11676 54.917 NaN 1108000 35 0 193950 0.263 + 23054 RDYLWQLIK 9 85 412.2368054644019 1233.6885869934058 3 412.2483825683594 MULTI HCD FTMS 0 0 0 11672 11739.0615234375 0.06377531541959586 13 -0.33092498779296875 4 Unmodified _RDYLWQLIK_ ENSG00000203870|ENST00000369529|SMIM9 9.5439744041441 0.27789851728676895 2 MK[C(Carbamidomethyl (C))Q]{I|L}WKK 8 7 41.675 0 0 3.3781 0 0 0 128.07158838443596 128.07158838443596 3.4850382454653257 0 0 0 0 0 0 0 1.0044321917401078 MK[C(Carbamidomethyl (C))Q]{I|L}WKK 3.3781 - 376 + NaN NaN 254838.5 NaN 8754 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11677 54.921 NaN 528010 35 0 17662 0.261 + 22793 QYLEKYYNL 9 88 617.3114265490846 1232.608300164969 2 617.311279296875 MULTI HCD FTMS 0 0 0 11672 193930.1875 0.8337703985703107 -1 0.02947998046875 5 Unmodified _QYLEKYYNL_ chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10;ENSG00000166670|ENST00000279441|MMP10 103.35351024395868 0.004027461563756449 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L} 10 7 + 68.421 0 0 5.5509 5.5509 85.094 0 0 0 4.576826316266548 4.576826316266548 4.576826316266548 4.576826316266548 0 0.6989700043360187 1.5228787452803376 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}C(Carbamidomethyl (C)){I|L};[YQ]{I|L}EKYYN{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E[{I|L}A]E{I|L}[CG]{I|L};[Y{I|L}]Q{[HG]|PP}TE{I|L}C(Carbamidomethyl (C)){I|L};[YQ]{I|L}{[HG]|PP}TE{I|L}C(Carbamidomethyl (C)){I|L};[YQ]{[HG]|PP}{I|L}TE{I|L}C(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}RR{I|L}C(Carbamidomethyl (C)){I|L};[Y{I|L}]Q{[HG]|PP}TE{I|L}[CG]{I|L};[YQ]{I|L}{[HG]|PP}TE{I|L}[CG]{I|L};{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}TE{I|L}C(Carbamidomethyl (C)){I|L} 5.5509;5.1796;4.8074;4.7432;4.7355;4.4162;4.3111;3.9997;3.992;3.7312 -;+;-;-;-;-;-;-;-;- + 1253 NaN NaN 168245 NaN 8755 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11678 54.924 NaN 342860 35 0 21792 0.261 + 9769 HYILHNSFF 9 61 589.2930776435726 1176.571602353945 2 589.293701171875 MULTI HCD FTMS 0 0 0 11672 149374.234375 0.10184047345239611 35 -0.9110565185546875 6 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 66.45667989310934 0.010234776021261575 2 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 85.094 0 0 7.2324 7.2324 90.696 0 0 0 22.376430167995878 48.640370379827885 22.376430167995878 9.208187539523749 0 1.566901560044258 1.5228787452803376 0.9247425010840047 0.28872548999643577 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVDP[RP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.2324;6.4497;4.5325;3.7499;3.0851 +;-;-;-;- + 168 NaN NaN 140439.9 NaN 8756 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11679 54.927 NaN 236910 35 0 20818 0.261 + 185 AESSIIHFE 9 66 516.751861794497 1031.489170655794 2 516.7362060546875 MULTI HCD FTMS 0 0 0 11672 35090.28125 0.6213033069758219 8 -0.20980453491210938 7 Unmodified _AESSIIHFE_ ENSG00000023445|ENST00000263464|BIRC3 10.823927491677226 0.26684000660059787 2 {I|L}{I|L}EH{M(Oxidation (M))|F} 5 6 18.761 0 0 1.8188 0 0 374.14097837239393 0 374.14097837239393 0 2.078343878162343 0 0 0 0 0 0 0 {I|L}{I|L}EH{M(Oxidation (M))|F} 1.8188 - 107 + NaN NaN 129972.4 NaN 8757 2920 11672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11681 54.932 NaN 2829300 35 0 411050 0.327 + 13919 KYQIINEEF 9 107 592.3032232832094 1182.5918936332187 2 592.3036499023438 MULTI HCD FTMS 0 0 0 11680 1877761.875 0.9024742247974462 1 -0.022846221923828125 1 Unmodified _KYQIINEEF_ ENSG00000163755|ENST00000296051|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3 223.81148253027484 4.831502538880383E-24 2 {[HG]|PP}PQ{I|L}{I|L}NEE{M(Oxidation (M))|F} 10 3 + 104.22 0 0 8.8125 8.8125 88.776 0 0 0 0.5115252244738144 6.884205843874042 0.5115252244738144 0.5115252244738144 0 3.1237125054200234 0 0.5387254899964358 2.149649864804614 {[HG]|PP}PQ{I|L}{I|L}NEE{M(Oxidation (M))|F};[YK]Q{I|L}{I|L}NEE{M(Oxidation (M))|F};[YQ]K{I|L}{I|L}NEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}NEE{M(Oxidation (M))|F};{[HG]|PP}PQ{I|L}{I|L}GGEE{M(Oxidation (M))|F};[YK][AG]{I|L}{I|L}NEE{M(Oxidation (M))|F};[YK]Q{I|L}{I|L}GGEE{M(Oxidation (M))|F};[YQ]K{I|L}{I|L}GGEE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KK{I|L}GGEE{M(Oxidation (M))|F};{[HG]|PP}PQ{I|L}{I|L}NE{M(Oxidation (M))|F}E 8.8125;8.7692;8.2612;8.2192;8.0375;7.9906;7.9906;7.4825;7.4405;7.4023 -;+;-;-;-;-;-;-;-;- + 3559 NaN NaN 511016.7 NaN 8758 2921 11680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11682 54.937 NaN 394140 35 0 48154 0.261 -1 0 60 539.8701618045612 2694.314426689806 5 540.2845458984375 MULTI HCD FTMS 0 0 0 11680 24920.61328125 0.3840666518209564 6 -0.14745330810546875 2 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VDK{I|L}EE 8 -1 40.654 0 0 1.5089 0 0 0 1743.8323346055204 1743.8323346055204 14.262137858390808 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VDK{I|L}EE 1.5089 - 263 NaN NaN 147628.2 NaN 8759 2921 11680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11683 54.94 NaN 209760 35 0 16660 0.261 + 18261 MPDVDLHL 8 53 478.23150982867156 954.4484667241431 2 478.2312316894531 MULTI HCD FTMS 0 0 0 11680 93769.71875 0.15221495171032323 24 -0.6093406677246094 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 2 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 57.885 0 0 6.0648 6.0648 87.326 0 0 0 43.28131590713106 7.1792500248472635 7.1792500248472635 8.010299956639813 0 1.9291746928241125 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VD[EP] 6.0648;5.2255;2.1679 +;+;- + 120 + NaN NaN 119790.7 NaN 8760 2921 11680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11684 54.944 NaN 264360 35 0 14562 0.261 -1 QYLLAHSMF 9 62 563.2731714703624 1124.5317900075247 2 563.7586059570312 MULTI HCD FTMS 0 0 0 11680 11646.26171875 0.389595338408863 3 -0.06521224975585938 4 Oxidation (M) _QYLLAHSM(Oxidation (M))F_ ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-2|FANCA;nc|ENSG00000187741|O15360-3|FANCA 6.723162845929126 0.3000504726104499 2 QTAS 4 -1 22.202 0 0 1.9744 0 0 130.1248701781863 604.2186972209531 734.3435673991394 0 0 0 0 0 0 0 0.75 0 QTAS 1.9744 - 45 + NaN NaN 127440.9 NaN 8761 2921 11680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11685 54.947 NaN 162420 35 0 34329 0.261 + 34993 YSVEVFYS 8 47 497.23103593290296 992.4475189326059 2 497.2310485839844 MULTI HCD FTMS 0 0 0 11680 19684.474609375 0.1215222533727126 7 -0.18359756469726562 5 Unmodified _YSVEVFYS_ REV__KIF1A|p.S141F|1|0.73|ENSG00000130294|chr2:240787258-240787258|G/A|missense_variant 11.640296217721598 0.50814828952472 2 EVTM 4 -1 37.423 0 0 3.7708 0 0 514.2370291441591 0 514.2370291441591 0 23.927900303521312 0 0 0 1 0 0 0 EVTM 3.7708 - 42 NaN NaN 119012 NaN 8762 2921 11680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11686 54.95 NaN 79271 35 0 3119.1 0.261 + 24906 RYRAKNRSR 9 44 603.851498470923 NaN 0 603.784423828125 PEAK HCD FTMS 0 0 0 11680 8838.5947265625 0.4415608346737662 -1 0.02620697021484375 6 Unmodified _RYRAKNRSR_ REV__ENSG00000213085|ENST00000368099|CFAP45 1.6526216038709556 0.28723846860855273 2 Y 1 -1 6.9897 0 0 0.57973 0 0 129.2111839073819 910.3900850885374 1039.6012689959193 0 0 0 0 0 0 0 0 0 Y 0.57973 + + 1 + NaN NaN 92606.5 NaN 8763 2921 11680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11688 54.955 NaN 782110 35 0 101000 0.327 + 18599 MVSDEYEQL 9 104 557.2419168286489 1112.4692807240976 2 557.2421875 MULTI HCD FTMS 0 0 0 11687 379489.15625 0.965156412818667 1 -0.026134490966796875 1 Unmodified _MVSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 106.94017166704063 0.003441928997083001 2 {[ET]|[MV]}SDEYEQ{I|L} 9 0 + 71.929 0 0 6.4657 6.4657 89.321 0 0 0 3.65279269351241 54.26205402970456 3.65279269351241 9.208187539523749 0 2.0752574989159953 0 1.2302046884880937 0 + + {[ET]|[MV]}SDEYEQ{I|L};{[ET]|[MV]}SDEYE[AG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}VDEYEQ{I|L};{[QN]|[E{I|L}]|[KN]}[CS]EYEQ{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YEQ{I|L};{[QN]|[E{I|L}]|[KN]}EY[CS]EQ{I|L};{[QN]|[E{I|L}]|[KN]}T[DC]YEQ{I|L};{[MS]|[{M(Oxidation (M))|F}A]}VDEYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[CS]EYE[AG]{I|L};{[QN]|[E{I|L}]|[KN]}E[CS]YE[AG]{I|L} 6.4657;5.6379;5.6298;5.1572;5.0998;5.0888;4.9084;4.8021;4.3295;4.2721 +;-;-;-;-;-;-;-;-;- + 1055 NaN NaN 212645.8 NaN 8764 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11689 54.96 NaN 1059200 35 0 101850 0.261 + 22052 QGLELAREL 9 101 514.7899666938332 1027.5653804544663 2 514.7908325195312 MULTI HCD FTMS 0 0 0 11687 282621.21875 0.6113781400727701 -4 0.10478973388671875 2 Unmodified _QGLELAREL_ ENSG00000123999|ENST00000243786|INHA 45.69961567697781 0.039180348357221985 2 {[QG]|[NA]}{I|L}REA{I|L}E{I|L} 9 3 + 76.13 0 0 7.4087 7.4087 93.389 0 0 0 18.741436528314566 61.0859334783964 18.741436528314566 16.091896990114236 0 1.579689690656103 1.3979400086720375 0 0.7302046884880937 {[QG]|[NA]}{I|L}REA{I|L}E{I|L};{[QG]|[NA]}{I|L}REAE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}A{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}R{[QG]|[NA]}A{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}RQQ{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[VG]{[QG]|[NA]}A{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[VG]QQ{I|L}E{I|L};{[QG]|[NA]}{I|L}[VG]EKNA{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}AE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}R{[QG]|[NA]}AE{I|L}{I|L} 7.4087;5.8427;4.8031;4.8031;4.7585;3.9069;3.8572;3.6431;3.237;3.237 -;-;-;-;-;-;-;-;-;- 679 NaN NaN 266362.9 NaN 8765 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11690 54.963 NaN 416980 35 0 26178 0.261 -1 GLCVNMRSL 9 78 504.75228845910425 1007.4900239850085 2 504.7525329589844 MULTI HCD FTMS 0 0 0 11687 206092.671875 0.8273358592194425 2 -0.04236602783203125 3 Oxidation (M) _GLCVNM(Oxidation (M))RSL_ ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8 34.10243960390752 0.09241788333544565 2 TP{I|L}NQDV 7 -1 61.904 0 0 6.1443 0 0 0 237.08565698795158 237.08565698795158 26.45828234534207 0 0 0 0 1.1549471895720984 1.5228787452803376 0.3054621874040891 0 TP{I|L}NQDV 6.1443 - 593 + NaN NaN 160785.7 NaN 8766 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11691 54.966 NaN 717190 35 0 151160 0.261 + 17776 MENKRTGFS 9 83 535.2587686638383 1068.5029843944765 2 535.2785034179688 MULTI HCD FTMS 0 0 0 11687 9731.740234375 0.022205083888064064 25 -0.6389427185058594 4 Unmodified _MENKRTGFS_ tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1 14.838274106304384 0.23215694253501695 2 MEA{I|L} 4 7 29.17 0 0 2.73 0 0 0 621.2715862589164 621.2715862589164 8.892433815615775 0 0 0 0 0 0 0.3252574989159953 0 MEA{I|L} 2.73 - 506 + NaN NaN 204862.8 NaN 8767 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11692 54.97 NaN 241060 35 0 23908 0.261 + 7825 FYQPKIQQF 9 67 599.8161857789761 1197.617818624752 2 599.816650390625 MULTI HCD FTMS 0 0 0 11687 74332.609375 0.3866112186230531 4 -0.08477401733398438 5 Unmodified _FYQPKIQQF_ chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI 54.773552608820026 0.024892918755467567 2 QQ{M(Oxidation (M))|F} 3 6 27.307 0 0 2.2801 0 0 776.4202748029312 0 776.4202748029312 0 8.165404618833577 0 0 0 0.3494850021680094 0 0 0 + QQ{M(Oxidation (M))|F} 2.2801 + + 183 NaN NaN 125310.5 NaN 8768 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11693 54.973 NaN 882060 35 0 50360 0.261 + 2490 DSANDGFVRL 10 104 547.2671908813275 1092.5198288294548 2 548.7861328125 MULTI HCD FTMS 0 0 0 11687 70429.9921875 0.36340896695149366 -3 0.07853317260742188 6 Unmodified _DSANDGFVRL_ ENSG00000169813|ENST00000682386|HNRNPF 42.312485326615175 0.12533928745458864 2 {[DS]|[MA]|[CV]|TT}ANDP[HA]R 9 4 28.272 0 0 2.5878 0 0 0 126.06769748166211 126.06769748166211 5.138050198288013 0 0 0 0 1.0400990676322908 0 1.3807196863200843 0.7742275032520141 {[DS]|[MA]|[CV]|TT}ANDP[HA]R 2.5878 - 674 NaN NaN 225940.8 NaN 8769 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11694 54.976 NaN 146230 35 0 11740 0.261 + 33922 YLQDNHLFFSL 11 54 466.23464886830163 1395.682117205105 3 466.2348937988281 MULTI HCD FTMS 0 0 0 11687 40799.0234375 0.14859099225216457 9 -0.232818603515625 7 Unmodified _YLQDNHLFFSL_ REV__ENSG00000136011|ENST00000388887|STAB2;REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;REV__STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant 6.234356020891411 0.3915788988406848 2 S{I|L} 2 -1 30.217 0 0 2.165 0 0 1177.5522799785394 0 1177.5522799785394 0 19.970843226013244 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 2.165 + + 72 NaN NaN 111280.6 NaN 8770 2922 11687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11696 54.981 NaN 1316700 35 0 72053 0.327 + 6021 FPDRIMNTF 9 104 578.77670921455 NaN 0 578.7767333984375 PEAK HCD FTMS 0 0 0 11695 637783.25 0.25807797068828164 -15 0.3458442687988281 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 143.21322497773306 2.8237506069208265E-14 2 TN{M(Oxidation (M))|F}{I|L}RDP 7 8 64.682 0 0 5.5975 0 0 165.07892043281407 144.04645841623906 309.12537884905316 0 0 0 0 0 3.079689690656103 0 2.1892404878284264 0.6109243748081782 TN{M(Oxidation (M))|F}{I|L}RDP 5.5975 - 1013 NaN NaN 286495 NaN 8771 2923 11695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11697 54.986 NaN 294620 35 0 36061 0.261 + 35779 YYMKDLPTSF 10 52 640.7968467141262 1279.5791404950523 2 640.796630859375 MULTI HCD FTMS 0 0 0 11695 61794.59375 0.5661307741655329 2 -0.02909088134765625 2 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 57.24910588100465 0.05142613675551719 2 YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 10 0 + 74.398 0 0 5.8142 5.8142 86.691 0 0 0 7.386280136974889 7.386280136974889 7.386280136974889 7.386280136974889 0 2.3494850021680094 2 0.4247425010840047 0 + + YY{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[VS]G{I|L}[TP]S{M(Oxidation (M))|F} 5.8142;5.237 +;- + 111 NaN NaN 146014.6 NaN 8772 2923 11695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11698 54.989 NaN 285360 35 0 47212 0.261 + 5720 FPAGYMYPSM 10 52 598.2430853481478 1194.4716177630955 2 598.2432861328125 MULTI HCD FTMS 0 0 0 11695 129070.703125 0.5690324789433476 -15 0.3458442687988281 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 52.268347100219714 0.06954005568441465 2 W{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 6 5 54.245 0 0 4.5414 0 0 349.1548329084 0 349.1548329084 0 43.030549546138914 0 0 0 1.8494850021680094 0 0 0 W{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.5414 - 186 NaN NaN 128193 NaN 8773 2923 11695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11699 54.993 NaN 193980 35 0 30497 0.264 + 14185 LALFSGLNRYL 11 58 422.91152558034537 1265.712747341236 3 422.911376953125 MULTI HCD FTMS 0 0 0 11695 53055.1328125 0.6732176041902314 1 -0.016231536865234375 4 Unmodified _LALFSGLNRYL_ REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF 7.608950283845883 0.38555039536024605 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2234 0 0 1100.6340252726798 0 1100.6340252726798 0 2.04119982655925 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2234 + + 16 + NaN NaN 114090.8 NaN 8774 2923 11695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11701 54.998 NaN 227590 35 0 21507 0.327 + 7292 FTNALIDEFQ 10 66 599.2929977506534 1196.5714425681067 2 599.8159790039062 MULTI HCD FTMS 0 0 0 11700 22206.8515625 0.4320035040821052 4 -0.11838531494140625 1 Unmodified _FTNALIDEFQ_ REV__ENSG00000109762|ENST00000652585|SNX25;REV__nc|ENSG00000109762|Q9H3E2-2|SNX25;REV__nc|ENSG00000109762|Q9H3E2|SNX25 12.872603262515298 0.3907060291096084 2 {I|L}{I|L}NEE{M(Oxidation (M))|F} 6 -1 24.275 0 0 2.0287 0 0 433.1976795880875 0 433.1976795880875 0 10.145228064085996 0 0 0 1.079689690656103 0 0 0 {I|L}{I|L}NEE{M(Oxidation (M))|F} 2.0287 - 239 NaN NaN 121139 NaN 8775 2924 11700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11702 55.002 NaN 226880 35 0 32319 0.263 + 35370 YYDDLKYRYF 10 56 482.5627385210116 1444.6663861632348 3 482.89691162109375 MULTI HCD FTMS 0 0 0 11700 53807.14453125 1 0 0 2 Unmodified _YYDDLKYRYF_ ENSG00000113532|ENST00000231461|ST8SIA4 14.218169984304629 0.37812005199054677 2 YY 2 8 45.217 0 0 3.1299 0 0 0 1115.5165415463516 1115.5165415463516 39.27440017027358 0 0 0 0 0.4247425010840047 2 0 0 + YY 3.1299 + + 10 + NaN NaN 114938.1 NaN 8776 2924 11700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11703 55.006 NaN 251480 35 0 21578 0.261 -1 DECCFMRL 8 63 573.7233677911807 1145.4321826491614 2 573.7249145507812 MULTI HCD FTMS 0 0 0 11700 73266.25 0.9678130099666965 -3 0.06521224975585938 3 2 Carbamidomethyl (C),Oxidation (M) _DEC(Carbamidomethyl (C))C(Carbamidomethyl (C))FM(Oxidation (M))RL_ ENST00000578730.1_1_4:1245335-1281818:+|nuORF;ENST00000581398.1_1_4:1245404-1245611:+|nuORF 12.531546534597751 0.5015908124873912 2 R{I|L} 2 -1 22.474 0 0 1.9621 0 0 858.2345448224625 0 858.2345448224625 0 15.484550065040281 0 0 0 0.5 0 0 0 R{I|L} 1.9621 + + 18 NaN NaN 127139.9 NaN 8777 2924 11700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11705 55.01 NaN 357710 35 0 51005 0.327 + 22866 QYNTYPIKL 9 64 570.3084295359622 1138.6023061387243 2 570.30859375 MULTI HCD FTMS 0 0 0 11704 180947.046875 0.5808039768629534 3 -0.10552597045898438 1 Unmodified _QYNTYPIKL_ ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 49.55428908609986 0.03219431099695407 2 [YQ]NTYP{I|L}[K{I|L}] 9 0 + 44.702 0 0 3.926 3.926 85.509 0 0 0 10.800756084811809 10.202264589233394 10.202264589233394 9.208187539523749 0 1.055462187404089 0 0 0.3054621874040891 + + [YQ]NTYP{I|L}[K{I|L}];[YQ]GGTYP{I|L}[K{I|L}] 3.926;3.1173 +;- + 202 + NaN NaN 132152.7 NaN 8778 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11706 55.015 NaN 385140 35 0 69732 0.261 + 10707 IPYGERITL 9 68 531.3027934486513 1060.5910339641025 2 531.3031005859375 MULTI HCD FTMS 0 0 0 11704 103104.59375 0.2899984099668097 7 -0.21041107177734375 2 Unmodified _IPYGERITL_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 24.990960013464015 0.14443998892849796 2 {I|L}PYW 4 6 48.672 0 0 4.5892 0 0 0 498.30442224674067 498.30442224674067 31.224862742317466 0 0 0 0 0.5 1.5228787452803376 0 0 {I|L}PYW 4.5892 - 89 + NaN NaN 166741.5 NaN 8779 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11707 55.018 NaN 420620 35 0 23718 0.261 + 14061 KYVKILYDF 9 79 594.8364743770965 1187.6583958209928 2 594.8367309570312 MULTI HCD FTMS 0 0 0 11704 100623.2265625 0.8160714287977168 2 -0.0693817138671875 3 Unmodified _KYVKILYDF_ ENSG00000177106|ENST00000318562|EPS8L2;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENST00000527832.5_1_11:724661-726978:+|nuORF;ENST00000531393.5_1_11:721935-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2 18.373094154950223 0.20161688160436167 2 KYV 3 6 23.689 0 0 1.9946 0 0 0 794.4082125299436 794.4082125299436 -0.669263797084362 0 -0.669263797084362 0 0 0.28872548999643577 0 0 0 + KYV 1.9946 + + 182 + NaN NaN 145644.9 NaN 8780 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11708 55.022 NaN 275690 35 0 27904 0.263 + 34532 YPHWPARIDEM 11 64 472.2237627345065 1413.6494588037197 3 472.2237854003906 MULTI HCD FTMS 0 0 0 11704 33077.796875 0.5119286978056371 -2 0.02909088134765625 4 Unmodified _YPHWPARIDEM_ ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENST00000495212.1_1_1:156715087-156721275:-|nuORF 5.868138319507137 0.39318500527288264 2 EM 2 9 23.583 0 0 1.6683 0 0 1135.5532391017762 0 1135.5532391017762 0 18.098943791441968 0 0 0 0.5 0 0 0 + EM 1.6683 + + 84 NaN NaN 125385.5 NaN 8781 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11709 55.025 NaN 217690 35 0 19448 0.261 -1 0 54 560.552241663474 2797.7248259843695 5 560.75341796875 MULTI HCD FTMS 0 0 0 11704 38514.9453125 0.501468729160199 -1 0.012859344482421875 5 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.24984 0 0 1809.3297733216216 872.2884846982055 2681.618258019827 0 0 0 0 0 0 0 0 0 {I|L} 0.24984 - 13 + NaN NaN 121863.7 NaN 8782 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11710 55.028 NaN 200720 35 0 20096 0.261 -1 0 39 646.968043287199 NaN 0 646.76806640625 PEAK HCD FTMS 0 0 0 11704 10685.0537109375 0.41877595271524937 -2 0.02909088134765625 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114541.5 NaN 8783 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11711 55.032 NaN 48488 35 0 5156.7 0.261 + -1 LKYAFMCRT 9 42 603.2943864899198 NaN 0 602.8295288085938 PEAK HCD FTMS 0 0 0 11704 18699.916015625 0.6522920014500591 3 -0.10552597045898438 7 Carbamidomethyl (C),Oxidation (M) _LKYAFM(Oxidation (M))C(Carbamidomethyl (C))RT_ REV__ENSG00000140521|ENST00000268124|POLG 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109514.1 NaN 8784 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11712 55.035 NaN 53145 35 0 4937.1 0.263 + 10832 ITPPMGWF 8 35 474.73604863191116 947.4575443306223 2 474.7292785644531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ITPPMGWF_ REV__ENST00000451608.2_1_2:74475609-74479477:-|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.6343 0 0 782.3784407923396 0 782.3784407923396 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6343 + + 6 + NaN NaN 95363.9 NaN 8785 2925 11704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11714 55.04 NaN 493650 35 0 69728 0.327 + 8905 HPDEPLYSF 9 66 552.7534650567095 1103.492377180219 2 552.7529296875 MULTI HCD FTMS 0 0 0 11713 178925.671875 0.8197396946818986 -1 0.02954864501953125 1 Unmodified _HPDEPLYSF_ ENSG00000119041|ENST00000263956|GTF3C3 64.23631603340823 0.01165516075559909 2 GYS{M(Oxidation (M))|F} 4 6 49.474 0 0 4.4834 0 0 631.2999160979908 0 631.2999160979908 0 40.37631117138085 0 0 0 1.5 0 0.7742275032520141 0 GYS{M(Oxidation (M))|F} 4.4834 - 252 + NaN NaN 181364.4 NaN 8786 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11715 55.044 NaN 444640 35 0 40247 0.261 + 15628 LPEEIREPAL 10 84 583.8241568783716 1165.633760823543 2 583.8248901367188 MULTI HCD FTMS 0 0 0 11713 103525.375 0.46303814991155234 5 -0.14804458618164062 2 Unmodified _LPEEIREPAL_ ENSG00000117697|ENST00000366977|NSL1;ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 35.61225514009592 0.18348312004207498 2 {I|L}PEE 4 6 57.141 0 0 4.9022 0 0 0 694.3907782104591 694.3907782104591 29.1014239747836 0 0 0 0 0.8494850021680094 1.3979400086720375 0.75 0 + {I|L}PEE 4.9022 + + 725 + NaN NaN 167807 NaN 8787 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11716 55.048 NaN 245470 35 0 15592 0.261 -1 FAAFCYMLT 9 78 562.2502398205305 1122.485926707861 2 562.2506713867188 MULTI HCD FTMS 0 0 0 11713 68996.3984375 1 0 0 3 Carbamidomethyl (C) _FAAFC(Carbamidomethyl (C))YMLT_ ENSG00000174871|ENST00000311445|CNIH2 18.13498045792455 0.20367413111508956 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{[NV]|[RG]}[HD]{M(Oxidation (M))|F} 9 -1 + 29.855 0 0 2.6597 2.6597 88.276 0 0 0 8.072420927871992 5.672874778693359 5.672874778693359 29.855312426617576 0 0.8494850021680094 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{[NV]|[RG]}[HD]{M(Oxidation (M))|F} 2.6597 - 41 + NaN NaN 125142.9 NaN 8788 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11717 55.051 NaN 145620 35 0 18563 0.261 -1 KYMYFTVVM 9 44 607.2849257552336 1212.5552985772672 2 607.7869262695312 MULTI HCD FTMS 0 0 0 11713 25714.466796875 0.2043629411136146 12 -0.31488037109375 4 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 26.268140514670165 0.13340543277302316 2 TVV{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.809 0 0 748.3251576628974 0 748.3251576628974 0 40.21652514092061 0 0 0 1.4247425010840047 0 0 0 TVV{M(Oxidation (M))|F} 3.809 + + 55 NaN NaN 111468.6 NaN 8789 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11718 55.055 NaN 174030 35 0 13523 0.261 + 17179 LYLYLQNPE 9 68 576.8005136356041 1151.5864743380082 2 576.8009643554688 MULTI HCD FTMS 0 0 0 11713 44680.62890625 0.5027747411784408 -6 0.13382720947265625 5 Unmodified _LYLYLQNPE_ ENST00000498004.5_1_X:15768244-15782785:+|nuORF 7.910154910731844 0.2910521888787154 2 PE 2 7 13.812 0 0 1.1994 0 0 907.476366111525 0 907.476366111525 0 3.3547064036788754 0 0 0 0 0 0 0 + PE 1.1994 + + 28 NaN NaN 118551.3 NaN 8790 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11719 55.058 NaN 392160 35 0 39168 0.261 + 27380 SYSPQAFKF 9 64 537.7663711698357 1073.5181894064713 2 537.7667236328125 MULTI HCD FTMS 0 0 0 11713 54332.92578125 0.35385780833713837 7 -0.1970977783203125 6 Unmodified _SYSPQAFKF_ ENSG00000131023|ENST00000543571|LATS1;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;nc|ENSG00000131023|O95835-2|LATS1 39.94969957227396 0.06557568441294001 2 DG{M(Oxidation (M))|F} 3 8 31.95 0 0 2.9762 0 0 736.3919514687744 0 736.3919514687744 0 16.856734291156954 0 0 0 0.9247425010840047 0 0 0 DG{M(Oxidation (M))|F} 2.9762 - 125 + NaN NaN 141216 NaN 8791 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11720 55.065 NaN 88165 35 0 3956.8 0.261 + 35251 YVQPFLGWNQ 10 39 626.3118734083853 NaN 0 626.3112182617188 PEAK HCD FTMS 0 0 0 11713 30479.8046875 0.8007537080178815 2 -0.07597732543945312 7 Unmodified _YVQPFLGWNQ_ ENST00000600463.1_1_19:18288394-18288718:+|nuORF 1.6526216038709556 0.33876987398426067 2 QK 2 9 7.4743 0 0 0.59765 0 0 263.17871024958055 728.2750948541624 991.453805103743 0 0 0 0 0 0 0 0 0 QK 0.59765 - 4 + NaN NaN 100259 NaN 8792 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11721 55.068 NaN 65141 35 0 3759.3 0.261 -1 0 36 601.4469604492188 NaN 0 601.4469604492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98614.5 NaN 8793 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11722 55.072 NaN 206000 35 0 7380.6 0.262 -1 0 45 511.6048020568221 3063.5851535413326 6 511.9405517578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.50544 0 0 2898.506278884886 0 2898.506278884886 0 15 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50544 - 2 + NaN NaN 115676.3 NaN 8794 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11723 55.075 NaN 127610 35 0 9228.8 0.262 + 21155 PPPGVCML 8 65 407.20404177768324 NaN 0 407.2041320800781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _PPPGVCML_ ENST00000378078.4_1_9:35754407-35754683:+|nuORF 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114142.3 NaN 8795 2926 11713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11725 55.08 NaN 4498400 35 0 977480 0.327 + 4984 FAYDGKDYL 9 116 546.255913087507 1090.497273241814 2 546.2564697265625 MULTI HCD FTMS 0 0 0 11724 3559227.25 0.8689607694999839 1 -0.036144256591796875 1 Unmodified _FAYDGKDYL_ ENSG00000204592|ENST00000376630|HLA-E 125.52916310638031 0.0008761121089336018 2 {[MS]|[{M(Oxidation (M))|F}A]}YDGKDY{I|L} 9 0 + 77.687 0 0 7.124 7.124 87.035 0 0 0 2.7126659626698313 2.7126659626698313 2.7126659626698313 2.7126659626698313 0 2.2614393726401687 0 0.9489700043360187 0 + + {[MS]|[{M(Oxidation (M))|F}A]}YDGKDY{I|L};{M(Oxidation (M))|F}AYDGKDY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DGKDY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}GKDY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}Y;{[YD]|[{M(Oxidation (M))|F}M]}K{M(Oxidation (M))|F}RYS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}DYGKDY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DGKD{I|L}Y;{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}GKD{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F}GKDY{I|L} 7.124;6.8753;6.6736;6.5719;5.9976;5.9907;5.6759;5.5472;5.4455;5.3869 +;+;-;-;-;-;-;-;-;- + 5963 NaN NaN 696669.8 NaN 8796 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11726 55.084 NaN 2327000 35 0 303930 0.261 + 22306 QPFREAIAL 9 98 522.7953378753259 1043.5761228174517 2 522.7955322265625 MULTI HCD FTMS 0 0 0 11724 1585581.25 0.6763000541161605 3 -0.08861160278320312 2 Unmodified _QPFREAIAL_ ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 69.10491478415734 0.009377850133389008 2 [{I|L}A]{[{M(Oxidation (M))|F}H]|[RQ]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A 8 5 29.836 0 0 2.859 0 0 0 128.07218921642428 128.07218921642428 9.277843492508708 0 0 0 0 1 1.3979400086720375 1.1549471895720984 1.5 [{I|L}A]{[{M(Oxidation (M))|F}H]|[RQ]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A 2.859 - 484 NaN NaN 442487 NaN 8797 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11727 55.088 NaN 872590 35 0 160760 0.262 + 24482 RYLDWIKKI 9 88 412.2482839795258 1233.7230225387775 3 412.2484130859375 MULTI HCD FTMS 0 0 0 11724 502323.125 0.5939363170667542 3 -0.08861160278320312 3 Unmodified _RYLDWIKKI_ ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8;nc|ENSG00000129455|O60259-3|KLK8 41.34703777101937 0.05916111928403252 2 [YR]{I|L}DW{I|L}KK{I|L} 9 0 + 74.32 0 0 6.0241 6.0241 91.42 0 0 0 8.142492736872597 61.55627800292333 8.142492736872597 19.719712763997563 0 2.274227503252014 0 0.3494850021680094 0.25 + + [YR]{I|L}DW{I|L}KK{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]W{I|L}KK{I|L};[YR]{I|L}{[RE]|[WV]}EKK{I|L};KK{[MS]|[{M(Oxidation (M))|F}A]}WGEKK{I|L} 6.0241;4.4257;3.4093;2.6354 +;-;-;- + 521 NaN NaN 230473.5 NaN 8798 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11728 55.091 NaN 452990 35 0 88968 0.261 -1 0 62 493.76104858191513 985.5075442306303 2 493.7614440917969 MULTI HCD FTMS 0 0 0 11724 303697.40625 0.17474382470288585 9 -0.2192840576171875 4 NaN NaN 2 QNDVS{I|L} 6 -1 66.701 0 0 6.7682 0 0 311.18358046699376 0 311.18358046699376 0 56.243434768119016 0 0 0 1.7059771852360797 0 0.4247425010840047 0.4247425010840047 QNDVS{I|L} 6.7682 - 76 NaN NaN 156564.8 NaN 8799 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11729 55.094 NaN 333510 35 0 36129 0.261 -1 KYAMMFAEL 9 74 568.2614445507492 1134.5083361682982 2 568.2616577148438 MULTI HCD FTMS 0 0 0 11724 135926.65625 0.7976440300154471 3 -0.08861160278320312 5 2 Oxidation (M) _KYAM(Oxidation (M))M(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YC(Carbamidomethyl (C))YKE{I|L} 8 -1 + 36.463 0 0 3.214 3.214 81.537 0 0 0 3.553884786631933 7.7815125038364386 3.553884786631933 3.0102999566398125 0 0.15494718957209852 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YC(Carbamidomethyl (C))YKE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YC(Carbamidomethyl (C))YEK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KM[Y{M(Oxidation (M))|F}]AE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YC(Carbamidomethyl (C))YE{I|L}K;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}[WD]ANK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HM]WWE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YC(Carbamidomethyl (C))Y{[SA]|[TG]}V{I|L};{[QN]|[E{I|L}]|[KN]}[HN][Y{M(Oxidation (M))|F}]AE{I|L};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]P{[C(Carbamidomethyl (C))E]|[WC]}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HM]WWNK 3.214;2.9487;2.9008;2.5281;2.384;1.87;1.8669;1.6422;1.5561;1.4494 -;-;-;-;-;-;-;-;-;- 344 NaN NaN 137645.4 NaN 8800 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11730 55.098 NaN 435550 35 0 20709 0.261 + 15629 LPEEIREPAL 10 81 583.8241568783716 1165.633760823543 2 583.8243408203125 MULTI HCD FTMS 0 0 0 11724 64080.88671875 0.28661470901159997 6 -0.15726470947265625 6 Unmodified _LPEEIREPAL_ ENSG00000117697|ENST00000366977|NSL1;ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 11.517880264261096 0.4033776509493788 2 {I|L}W{I|L}[KC]TQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 9 + 31.666 0 0 2.7166 2.7166 85.236 0 0 0 0.31234684152074976 6.043031117331953 0.31234684152074976 9.208187539523752 0 0 0 0.3807196863200844 0.5796896906561032 {I|L}W{I|L}[KC]TQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}W{I|L}[KC]T[AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}[KS]{[ES]|[DT]|[{I|L}C]}VTQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}W{I|L}[KC]T[KG]{[MS]|[{M(Oxidation (M))|F}A]};{I|L}W{I|L}[KC][KA]S{[MS]|[{M(Oxidation (M))|F}A]};{I|L}W{I|L}{M(Oxidation (M))|F}[KG]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}W{I|L}{M(Oxidation (M))|F}[KG][AG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{I|L}W{I|L}{M(Oxidation (M))|F}[KG][KG]{[MS]|[{M(Oxidation (M))|F}A]} 2.7166;1.9266;1.6924;1.3757;1.2925;1.2021;0.41212;0.18779 -;-;-;-;-;-;-;- 820 + NaN NaN 154657.1 NaN 8801 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11731 55.101 NaN 210230 35 0 8423 0.261 + 22794 QYLEKYYNL 9 63 617.3114265490846 1232.608300164969 2 617.3106079101562 MULTI HCD FTMS 0 0 0 11724 68503.15625 0.2945178604021448 6 -0.15726470947265625 7 Unmodified _QYLEKYYNL_ chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10;ENSG00000166670|ENST00000279441|MMP10 13.042465956692817 0.2476723265019929 2 Q[{I|L}A]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 7 5 18.773 0 0 1.523 0 0 387.18004042793126 0 387.18004042793126 0 6.566366357824975 0 0 0 0.3054621874040891 0 0 0.2742275032520141 Q[{I|L}A]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.523 - 102 NaN NaN 116580.6 NaN 8802 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11732 55.104 NaN 376130 35 0 46230 0.261 -1 RYMVHLLEL 9 74 595.3233580018046 1188.6321630704092 2 595.3234252929688 MULTI HCD FTMS 0 0 0 11724 118718.2421875 1 0 0 8 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ ENSG00000137814|ENST00000260372|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 22.736283301280096 0.1639198954644489 2 {I|L}DH{I|L}{I|L}E{I|L} 7 -1 48.193 0 0 4.0545 0 0 337.16612441230626 0 337.16612441230626 0 41.203745000939165 0 0 0 0.6747425010840047 0 0 0 {I|L}DH{I|L}{I|L}E{I|L} 4.0545 - 142 NaN NaN 148362.9 NaN 8803 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11733 55.108 NaN 334420 35 0 89799 0.263 + 26941 SYLERHGLINF 11 50 450.2382155000667 1347.6928171004001 3 450.2381591796875 MULTI HCD FTMS 0 0 0 11724 116707.9609375 0.8940515061971158 -2 0.0693817138671875 9 Unmodified _SYLERHGLINF_ ENSG00000004487|ENST00000400181|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF;nc|ENSG00000004487|O60341|KDM1A 8.28643447893445 0.3825791798255215 2 G{M(Oxidation (M))|F} 2 9 25.969 0 0 1.9269 0 0 1125.5927022095782 0 1125.5927022095782 0 21.53212513775344 0 0 0 0.5 0 0 0 G{M(Oxidation (M))|F} 1.9269 - 8 + NaN NaN 138833 NaN 8804 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11734 55.111 NaN 309210 35 0 23695 0.261 + 18150 MPDGQFKDISL 11 67 633.8052379415474 1265.5959229498947 2 634.3078002929688 MULTI HCD FTMS 0 0 0 11724 89669.3125 0.33582475333818407 -7 0.1736602783203125 10 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 55.466997841574724 0.05896858946189219 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 71.789 0 0 5.6723 5.6723 91.5 0 0 0 4.357285695614365 64.79927960179114 4.357285695614365 27.003187623076947 0 2.1549471895720984 0 1.2059771852360797 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L} 5.6723;3.5387 +;- + 104 NaN NaN 141862.8 NaN 8805 2927 11724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11736 55.116 NaN 844400 35 0 175120 0.327 + -1 EMLDCLLEM 9 81 593.2451923260526 1184.475831718905 2 593.2454223632812 MULTI HCD FTMS 0 0 0 11735 362327.6875 0.695261500371872 -2 0.07597732543945312 1 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 2 {I|L}V{I|L}DE 5 -1 81.172 0 0 6.853 0 0 0 612.1467116104299 612.1467116104299 52.9402281476392 0 0 0 0 1.805462187404089 1.6989700043360187 1.055462187404089 0 {I|L}V{I|L}DE 6.853 - 118 + NaN NaN 222887.2 NaN 8806 2928 11735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11737 55.12 NaN 813760 35 0 63422 0.261 + 29661 VAQRALEEL 9 90 514.7899666938332 1027.5653804544663 2 514.7905883789062 MULTI HCD FTMS 0 0 0 11735 208770.359375 0.45162084638066935 2 -0.05246734619140625 2 Unmodified _VAQRALEEL_ REV__ENSG00000100983|ENST00000651619|GSS;REV__nc|ENSG00000100983|P48637-2|GSS 39.94969957227396 0.06557568441294001 2 {[QG]|[NA]}{I|L}R{[CP]|[EA]}{I|L}E{I|L} 9 -1 + 57.178 0 0 5.5644 5.5644 90.329 0 0 0 15.106442888633254 36.00682730121846 15.106442888633254 16.861818737241734 0 1.714559192431053 1.0969100130080565 0 0.6421590589602533 {[QG]|[NA]}{I|L}R{[CP]|[EA]}{I|L}E{I|L};{[QG]|[NA]}{I|L}R{[CP]|[EA]}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AN{I|L}{I|L};{[QG]|[NA]}{I|L}[VG][SG]AN{I|L}{I|L};{[QG]|[NA]}{I|L}[VG][KQ]AD{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}NA{I|L};{[QG]|[NA]}{I|L}[VG]QQVS{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AGG{I|L}{I|L} 5.5644;3.9234;1.4542;1.4442;1.4435;1.4016;1.1022;0.55812 -;-;-;-;-;-;-;- 584 NaN NaN 224595.2 NaN 8807 2928 11735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11738 55.124 NaN 559720 35 0 123960 0.261 -1 MPFRGYAVL 9 75 535.2791474165141 1068.543741899828 2 535.2789916992188 MULTI HCD FTMS 0 0 0 11735 222690.109375 0.8219436189732723 5 -0.12112045288085938 3 Oxidation (M) _M(Oxidation (M))PFRGYAVL_ ENSG00000169710|ENST00000306749|FASN 37.97399986684836 0.07464525285885698 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}R[YG]AV{I|L} 9 -1 + 40.912 0 0 3.8287 3.8287 81.504 0 0 0 3.277596006209045 21.430534213938085 3.277596006209045 1.706962271689747 0 1.305462187404089 0 0.6307196863200843 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}R[YG]AV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}R[YQ]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}R[YG]G{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}R[YN]{I|L}{I|L} 3.8287;3.669;2.4208;2.2611 +;-;-;- + 383 NaN NaN 169871.1 NaN 8808 2928 11735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11739 55.127 NaN 263810 35 0 18388 0.261 + 18600 MVSDEYEQL 9 70 557.2419168286489 1112.4692807240976 2 557.2417602539062 MULTI HCD FTMS 0 0 0 11735 82935.890625 0.21093120941989058 7 -0.16358184814453125 4 Unmodified _MVSDEYEQL_ ENSG00000147403|ENST00000369817|RPL10;ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF 41.8396318013385 0.056899836730939755 2 YEQ{I|L} 4 5 44.483 0 0 3.9985 0 0 561.2091541974625 0 561.2091541974625 0 28.284634594678266 0 0 0 1 0 0.7059771852360797 0 + YEQ{I|L} 3.9985 + + 119 NaN NaN 125375.2 NaN 8809 2928 11735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11740 55.131 NaN 374240 35 0 16864 0.261 + 18722 MYSFVNDKF 9 73 583.7627928601887 1165.5110327871773 2 583.762451171875 MULTI HCD FTMS 0 0 0 11735 108781.2734375 1 0 0 5 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 53.31671820480216 0.026930930319421505 2 DNV{M(Oxidation (M))|F}S[YE] 7 8 47.343 0 0 4.062 0 0 293.17393691230626 0 293.17393691230626 0 32.39409760207032 0 0 0 2.055462187404089 0 0.6989700043360187 0 DNV{M(Oxidation (M))|F}S[YE] 4.062 - 724 NaN NaN 148761.8 NaN 8810 2928 11735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11742 55.136 NaN 1263400 35 0 82578 0.327 + 6022 FPDRIMNTF 9 102 578.77670921455 NaN 0 578.776611328125 PEAK HCD FTMS 0 0 0 11741 763268.5625 0.30885540142385653 -9 0.22937774658203125 1 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 166.76915356408847 1.2533441609084439E-26 2 TN{M(Oxidation (M))|F}{I|L}RDP 7 8 69.545 0 0 6.0184 0 0 165.07901198554845 144.04637634240183 309.1253883279503 0 0 0 0 0 3.079689690656103 0 2.5400990676322905 0.8556270500406937 TN{M(Oxidation (M))|F}{I|L}RDP 6.0184 - 1080 NaN NaN 286739.8 NaN 8811 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11743 55.14 NaN 812010 35 0 62824 0.261 -1 VMAPRTLLL 9 92 515.3097338612731 1028.6049147893461 2 515.309814453125 MULTI HCD FTMS 0 0 0 11741 251930.171875 0.7860426951966929 -7 0.18032455444335938 2 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 34.93206674587334 0.08860942999206235 2 [{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}{I|L} 9 -1 + 43.478 0 0 4.2269 4.2269 90.22 0 0 0 7.235834254131106 19.056197465655416 7.235834254131106 43.47759145855257 0 1.305462187404089 1.154901959985743 0 0 [{M(Oxidation (M))|F}V]A[RP]T{I|L}{I|L}{I|L} 4.2269 + + 668 NaN NaN 222450.1 NaN 8812 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11744 55.144 NaN 362790 35 0 74192 0.261 + 5721 FPAGYMYPSM 10 57 598.2430853481478 1194.4716177630955 2 598.24365234375 MULTI HCD FTMS 0 0 0 11741 144800.15625 0.6383787324883807 -9 0.22937774658203125 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 74.42276476219924 0.012344753082416305 2 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 59.87 0 0 5.0123 0 0 63.999090614600455 0 63.999090614600455 0 51.91122510072759 0 0 0 0.9247425010840047 0 1.9731975075880328 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.0123 - 215 + NaN NaN 143627.6 NaN 8813 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11745 55.147 NaN 696150 35 0 30184 0.261 + 19717 NYAQVFNKL 9 95 548.7928296577039 1095.5711063822077 2 548.7927856445312 MULTI HCD FTMS 0 0 0 11741 190297.9375 1 0 0 4 Unmodified _NYAQVFNKL_ ENSG00000136261|ENST00000258761|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF;nc|ENSG00000136261|Q9Y6E2-2|BZW2 96.11092074494114 0.00436583732602279 2 [YN]AQV{M(Oxidation (M))|F}NK{I|L} 9 0 + 78.683 0 0 7.1819 7.1819 90.603 0 0 0 18.471360813312927 14.973024840566467 14.973024840566467 9.208187539523749 0 2.3807196863200843 1.6989700043360187 0 1.281460752475311 + + [YN]AQV{M(Oxidation (M))|F}NK{I|L};[YN]A[AG]V{M(Oxidation (M))|F}NK{I|L};[YN]AQV{M(Oxidation (M))|F}GGK{I|L};[YN]A[AG]V{M(Oxidation (M))|F}GGK{I|L};[YN]{I|L}DG{M(Oxidation (M))|F}VR{I|L};[YN]A[DV]{M(Oxidation (M))|F}VR{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[DA]|[EG]}{M(Oxidation (M))|F}NK{I|L};[YN]{I|L}{[QG]|[NA]}{M(Oxidation (M))|F}NK{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[DA]|[EG]}{M(Oxidation (M))|F}GGK{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[SG]QV{M(Oxidation (M))|F}NK{I|L} 7.1819;6.3415;6.3415;5.5049;3.8557;3.766;3.4103;3.1722;2.5698;2.4712 +;-;-;-;-;-;-;-;-;- + 1228 NaN NaN 196319.8 NaN 8814 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11746 55.15 NaN 514650 35 0 78870 0.261 + 26937 SYLENVDHF 9 69 562.2564349742015 1122.498317015203 2 562.2568969726562 MULTI HCD FTMS 0 0 0 11741 181809 0.689560156925958 -1 0.019573211669921875 5 Unmodified _SYLENVDHF_ ENSG00000108509|ENST00000348066|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;nc|ENSG00000108509|O94983-5|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 117.76058876431921 0.001675465467887476 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F} 9 0 + 98.184 0 0 8.7469 8.7469 96.053 0 0 0 5.6424927368725974 83.02887198244136 5.6424927368725974 21.267959391884546 0 3.1989700043360187 0 0.7302046884880937 1.2059771852360797 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EGGVDH{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}HHNVDH{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}HHGGVDH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[TA][YQ]DH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[WD]SE[TP]{M(Oxidation (M))|F};[HD][YK]SE[TP]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[TA]E[YN]H{M(Oxidation (M))|F} 8.7469;6.8522;6.4777;4.583;3.4697;2.8937;2.6255;1.617 +;-;-;-;-;-;-;- + 544 NaN NaN 176425.5 NaN 8815 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11747 55.154 NaN 339260 35 0 16546 0.261 + 18723 MYSFVNDKF 9 74 583.7627928601887 1165.5110327871773 2 583.7630615234375 MULTI HCD FTMS 0 0 0 11741 100592.46875 0.9247222942999941 1 -0.032894134521484375 6 Oxidation (M) _M(Oxidation (M))YSFVNDKF_ ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C 49.74193281347159 0.03193181027262171 2 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F}VND 7 2 53.537 0 0 4.5934 0 0 0 290.1502779596313 290.1502779596313 42.56752609342385 0 0 0 0 2.0356668758921828 0 0.3494850021680094 0 + {M(Oxidation (M))|F}YS{M(Oxidation (M))|F}VND 4.5934 + + 402 + NaN NaN 135318.3 NaN 8816 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11748 55.157 NaN 392990 35 0 60592 0.263 + 27582 TAEALQPTL 9 58 472.258402952514 942.502252971828 2 472.2584228515625 MULTI HCD FTMS 0 0 0 11741 121642.078125 0.8135650023878919 -1 0.019573211669921875 7 Unmodified _TAEALQPTL_ ENSG00000172530|ENST00000682872|BANP;ENST00000466847.5_1_16:88068919-88110264:+|nuORF;ENST00000481948.1_1_16:88104968-88110264:+|nuORF;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP;nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP 60.07390631473393 0.0174780869009295 2 [TA]EA{I|L}QP[{I|L}T] 9 0 [TA]EA{I|L} + + 32.892 18.188 3.7481 3.4899 3.4899 60.478 0 0 0 0 14.704751719805017 0 0 0 1 0 0.7302046884880937 0.28872548999643577 + + [TA]EA{I|L}QP[{I|L}T] 3.4899 + + 166 + NaN NaN 144058.9 NaN 8817 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11749 55.16 NaN 195600 35 0 11041 0.261 + 28451 TPLDEKSLAL 10 56 543.8062599036467 1085.5979668740933 2 543.8062744140625 MULTI HCD FTMS 0 0 0 11741 85166.859375 1 0 0 8 Unmodified _TPLDEKSLAL_ ENSG00000123562|ENST00000441076|MORF4L2;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1 51.487983226225225 0.0723780666322865 2 TP{I|L}D 4 6 48.175 0 0 4.4377 0 0 0 656.3628023736936 656.3628023736936 25.21652514092061 0 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + TP{I|L}D 4.4377 + + 89 + NaN NaN 108060.9 NaN 8818 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11750 55.164 NaN 157120 35 0 15211 0.261 + 18262 MPDVDLHL 8 57 478.23150982867156 954.4484667241431 2 478.2313232421875 MULTI HCD FTMS 0 0 0 11741 44353.0859375 0.07199768671781773 32 -0.8601531982421875 9 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 50.855029805455786 0.12247309515496523 2 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 59.162 0 0 6.1985 6.1985 92.404 0 0 0 39.69782205064881 11.237125054200234 11.237125054200234 27.37334396171555 0 1.579689690656103 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE 6.1985;3.3306;3.2651 +;+;- + 47 + NaN NaN 115370.6 NaN 8819 2929 11741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11752 55.168 NaN 3103100 35 0 168490 0.327 + 2491 DSANDGFVRL 10 119 547.2671908813275 1092.5198288294548 2 547.2677612304688 MULTI HCD FTMS 0 0 0 11751 1261676.625 0.327151143867167 4 -0.09486007690429688 1 Unmodified _DSANDGFVRL_ ENSG00000169813|ENST00000682386|HNRNPF 197.86358387946785 4.058059336504689E-23 2 {[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}VR{I|L} 10 0 + 102.86 0 0 9.4146 9.4146 90.538 0 0 0 3.3315463250761184 3.3315463250761184 3.3315463250761184 3.3315463250761184 0 3.2302046884880937 0 2.3556270500406935 1.6923239215968577 + + {[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}VR{I|L};DSANDG{M(Oxidation (M))|F}V{I|L}R;DSAGGDG{M(Oxidation (M))|F}V{I|L}R;{[DS]|[MA]|[CV]|TT}ANDG{M(Oxidation (M))|F}RV{I|L};DSANDG{M(Oxidation (M))|F}{I|L}VR;{[DS]|[MA]|[CV]|TT}AGGDG{M(Oxidation (M))|F}VR{I|L};{[QG]|[NA]}DSDG{M(Oxidation (M))|F}VR{I|L};[DN]ASDG{M(Oxidation (M))|F}VR{I|L};{[DS]|[MA]|[CV]|TT}AND[R{M(Oxidation (M))|F}]GV{I|L};DSAGGDG{M(Oxidation (M))|F}{I|L}VR 9.4146;9.1096;8.2708;7.7375;7.4192;7.3752;7.2899;7.2073;7.1749;6.5803 +;-;-;-;-;-;-;-;-;- + 1981 NaN NaN 518998.2 NaN 8820 2930 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11753 55.173 NaN 254350 35 0 37310 0.261 + 6650 FPLTTESAM 9 53 506.7359123705886 1011.4572718079772 2 506.7356872558594 MULTI HCD FTMS 0 0 0 11751 81341.3125 0.796651392976602 -5 0.15799331665039062 2 Oxidation (M) _FPLTTESAM(Oxidation (M))_ ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF 49.93300154707207 0.03166451819912738 2 TTESA{M(Oxidation (M))|F} 6 3 52.057 0 0 5.1468 0 0 357.20564467597814 0 357.20564467597814 0 38.244944827498415 0 0 0 2.360924374808178 0 0.4247425010840047 0 + TTESA{M(Oxidation (M))|F} 5.1468 + + 75 NaN NaN 119375.8 NaN 8821 2930 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11754 55.176 NaN 383360 35 0 59878 0.261 + 31677 VYKDSFELKF 10 56 425.89215897253825 1274.6546475178147 3 425.89215087890625 MULTI HCD FTMS 0 0 0 11751 128997.1640625 0.8297769533430163 -1 0.032894134521484375 3 Unmodified _VYKDSFELKF_ ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A 62.78007862980855 0.031311211223229926 2 VYK[WY]E{I|L}K 8 4 79.914 0 0 6.2695 0 0 0 162.0559023492797 162.0559023492797 68.94524706148886 0 0 0 0 1.2302046884880937 2 1.274227503252014 0 VYK[WY]E{I|L}K 6.2695 - 171 + NaN NaN 138899.3 NaN 8822 2930 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11755 55.18 NaN 207430 35 0 17775 0.261 + 16048 LPSGEDYNL 9 50 504.23760439318664 1006.4606558531733 2 504.23748779296875 MULTI HCD FTMS 0 0 0 11751 77858.7265625 0.8712185578266736 -2 0.05246734619140625 4 Unmodified _LPSGEDYNL_ ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1 22.736283301280096 0.1639198954644489 2 DYN{I|L} 4 5 42.295 0 0 4.2023 0 0 483.2328026233927 0 483.2328026233927 0 33.34244409179611 0 0 0 0.6549471895720985 0 0 0.3807196863200844 + DYN{I|L} 4.2023 + + 37 NaN NaN 124092 NaN 8823 2930 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11756 55.183 NaN 149310 35 0 16970 0.261 + 35371 YYDDLKYRYF 10 52 482.5627385210116 1444.6663861632348 3 482.56243896484375 MULTI HCD FTMS 0 0 0 11751 7236.4140625 0.09200780753337572 3 -0.06865310668945312 5 Unmodified _YYDDLKYRYF_ ENSG00000113532|ENST00000231461|ST8SIA4 10.315234532428624 0.4146267933501748 2 YY 2 8 44.776 0 0 3.0994 0 0 0 1115.5155306339504 1115.5155306339504 28.465240951829784 0 0 0 0 0.3807196863200844 2 0 0 + YY 3.0994 + + 12 + NaN NaN 110355.4 NaN 8824 2930 11751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11758 55.188 NaN 629160 35 0 62438 0.327 + 1144 AYLEAYKEF 9 64 567.2793801417863 1132.5442073503725 2 567.2793579101562 MULTI HCD FTMS 0 0 0 11757 325777.25 0.7923720352855771 -1 0.01959991455078125 1 Unmodified _AYLEAYKEF_ ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 110.5527297667825 0.0028521687250969148 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F} 9 0 + 112.84 0 0 9.9635 9.9635 92.675 0 0 0 18.5827208845118 85.72805036539442 18.5827208845118 7.715299873086607 0 3.3494850021680094 1.6989700043360187 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYG{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}THPRE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA[VS]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}KE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YQ]{I|L}S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}AYAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}G{I|L}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}AYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TAY[VG]E{M(Oxidation (M))|F} 9.9635;9.2823;7.6434;7.2955;6.8516;6.3235;6.217;6.1704;5.9248;5.9237 +;-;-;-;-;-;-;-;-;- + 1264 NaN NaN 187970.6 NaN 8825 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11759 55.192 NaN 428900 35 0 65796 0.261 + 8906 HPDEPLYSF 9 66 552.7534650567095 1103.492377180219 2 552.7536010742188 MULTI HCD FTMS 0 0 0 11757 112273.6484375 0.5143765303576792 4 -0.09151458740234375 2 Unmodified _HPDEPLYSF_ ENSG00000119041|ENST00000263956|GTF3C3 54.773552608820026 0.024892918755467567 2 YS{M(Oxidation (M))|F} 3 6 48.94 0 0 4.435 0 0 688.3180030181355 0 688.3180030181355 0 41.49288766643714 0 0 0 1.5 0 0.7742275032520141 0 + YS{M(Oxidation (M))|F} 4.435 + + 83 + NaN NaN 140542.5 NaN 8826 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11760 55.196 NaN 218780 35 0 44143 0.261 -1 NPLHLDYVM 9 53 559.2703814400484 1116.5262099468966 2 559.2713623046875 MULTI HCD FTMS 0 0 0 11757 67606.1875 0.5490723387104859 -3 0.0720672607421875 3 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 36.12702656103203 0.08312389501731911 2 YV{M(Oxidation (M))|F} 3 -1 41.198 0 0 3.6898 0 0 689.3493738646686 0 689.3493738646686 0 35.713337517843655 0 0 0 1.5 0 0 0 YV{M(Oxidation (M))|F} 3.6898 + + 37 + NaN NaN 114599.9 NaN 8827 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11761 55.199 NaN 257450 35 0 14392 0.261 + 9770 HYILHNSFF 9 56 589.2930776435726 1176.571602353945 2 589.29345703125 MULTI HCD FTMS 0 0 0 11757 54380.390625 0.03707550201645171 46 -1.1937446594238281 4 Unmodified _HYILHNSFF_ ENSG00000163659|ENST00000295924|TIPARP 53.40400417844725 0.026808823219830042 2 {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 55.952 0 0 4.7555 4.7555 86.575 0 0 0 5.937084621982258 34.92107276150385 5.937084621982258 9.208187539523749 0 1.6281446971601314 0 0.9247425010840047 0 + + {[WN]|[YH]}{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{I|L}HGGS{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVNH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HYVGGH{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F};HY{I|L}{I|L}HNS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WN]|[YH]}[HK][TP]T{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7555;3.9729;3.4507;2.6681;2.5339;2.114 +;-;-;-;+;- + 86 NaN NaN 125875 NaN 8828 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11762 55.203 NaN 197210 35 0 21845 0.261 -1 YYMKDLPTSF 10 44 640.7968467141262 1279.5791404950523 2 640.7977905273438 MULTI HCD FTMS 0 0 0 11757 74800.15625 0.6852811515653879 10 -0.2489471435546875 5 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 30.7034409873982 0.22608124881558994 2 {I|L}[TP]S{M(Oxidation (M))|F} 5 -1 32.703 0 0 2.5558 0 0 716.2850819318375 0 716.2850819318375 0 2.2454626555970947 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}[TP]S{M(Oxidation (M))|F} 2.5558 + + 10 NaN NaN 135334.5 NaN 8829 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11763 55.206 NaN 253540 35 0 18593 0.261 + 4362 EWHHLLIEL 9 59 595.3233580018046 1188.6321630704092 2 595.323486328125 MULTI HCD FTMS 0 0 0 11757 48021.8984375 0.4045031121809879 4 -0.09151458740234375 6 Unmodified _EWHHLLIEL_ ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1 6.723162845929126 0.3000504726104499 2 {I|L}{I|L}E{I|L} 4 5 25.918 0 0 2.1805 0 0 702.3256092755875 0 702.3256092755875 0 13.064250275506877 0 0 0 0 0 0 0 + {I|L}{I|L}E{I|L} 2.1805 + + 68 NaN NaN 127870.2 NaN 8830 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11764 55.209 NaN 141410 35 0 22183 0.261 -1 WCLMESVL 8 43 527.2400789090864 1052.4656048849727 2 527.2401733398438 MULTI HCD FTMS 0 0 0 11757 49455.19921875 1 0 0 7 Carbamidomethyl (C),Oxidation (M) _WC(Carbamidomethyl (C))LM(Oxidation (M))ESVL_ ENST00000556254.1_1_14:35579616-35591165:-|nuORF 8.593279151180031 0.5292430274356741 2 QV{I|L} 3 -1 23.812 0 0 2.2625 0 0 694.2291737287125 0 694.2291737287125 0 7.35863111416478 0 0 0 0 0 0 0 QV{I|L} 2.2625 - 12 NaN NaN 103080.7 NaN 8831 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11765 55.213 NaN 153540 35 0 7738.7 0.261 -1 0 32 636.0211973289004 NaN 0 636.1944580078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 M 1 -1 6.9897 0 0 0.55036 0 0 535.6172467212854 600.3501680963499 1135.9674148176352 0 0 0 0 0 0 0 0 0 M 0.55036 - 1 + NaN NaN 122927.5 NaN 8832 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11766 55.216 NaN 154750 35 0 18004 0.261 -1 SYQKVMALW 9 63 571.2892037872349 1140.5638546412697 2 571.2894897460938 MULTI HCD FTMS 0 0 0 11757 53135.1328125 0.2336087880056245 19 -0.4915885925292969 9 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ ENSG00000127603|ENST00000564288|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1 27.628801355627647 0.12213550946336599 2 A{I|L}W 3 -1 33.188 0 0 2.9098 0 0 752.35161025215 0 752.35161025215 0 18.48258770979733 0 0 0 1 0 0 0 A{I|L}W 2.9098 + + 48 NaN NaN 105078.9 NaN 8833 2931 11757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11768 55.221 NaN 234720 35 0 23232 0.327 + 24963 RYTIQLTTL 9 63 554.8214699485749 1107.6283869639497 2 555.3236694335938 MULTI HCD FTMS 0 0 0 11767 24883.689453125 0.021307780449477842 20 -0.51788330078125 1 Unmodified _RYTIQLTTL_ ENSG00000162804|ENST00000310397|SNED1;ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;nc|ENSG00000162804|Q8TER0-5|SNED1 12.240655878213236 0.2545997876781172 2 TT{I|L} 3 6 37.435 0 0 3.3797 0 0 774.4397725604756 0 774.4397725604756 0 18.138181262758263 0 0 0 0.9247425010840047 0 0.5 0 + TT{I|L} 3.3797 + + 59 NaN NaN 120925.6 NaN 8834 2932 11767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11769 55.225 NaN 131520 35 0 10011 0.261 -1 FWLCFYSPM 9 45 605.2579956031676 1208.5014382731351 2 605.7597045898438 MULTI HCD FTMS 0 0 0 11767 24200.984375 0.6137848293763034 1 -0.0162353515625 2 Oxidation (M) _FWLCFYSPM(Oxidation (M))_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|92 11.640296217721598 0.25978676193971967 2 YPS{M(Oxidation (M))|F} 4 -1 18.94 0 0 1.5672 0 0 696.3066273373914 0 696.3066273373914 0 8.455612550363796 0 0 0 0.1989700043360188 0 0.4247425010840047 0 YPS{M(Oxidation (M))|F} 1.5672 - 26 + NaN NaN 99122.5 NaN 8835 2932 11767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11770 55.229 NaN 187640 35 0 32667 0.261 + 8978 HPDYSFGEL 9 56 532.7381408646033 1063.4617287960066 2 532.7378540039062 MULTI HCD FTMS 0 0 0 11767 69940.09375 0.415450433292421 -9 0.239501953125 3 Unmodified _HPDYSFGEL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}GE{I|L} 5 5 47.875 0 0 4.5018 0 0 452.1845875470719 0 452.1845875470719 0 35.42796583575644 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}GE{I|L} 4.5018 - 114 NaN NaN 116877.6 NaN 8836 2932 11767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11771 55.232 NaN 89553 35 0 4745.3 0.261 + 2583 DTPMCRIL 8 52 474.73604863191116 947.4575443306223 2 474.7361145019531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _DTPMCRIL_ ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;RICTOR|p.R1613H|1|0.24|ENSG00000164327|chr5:38944521-38944521|C/T|missense_variant 7.289230182591677 0.5311777711368266 2 T{I|L} 2 6 25.969 0 0 2.7409 0 0 715.3162575913459 0 715.3162575913459 0 10.484550065040281 0 0 0 0.5 0 0 0 T{I|L} 2.7409 - 17 NaN NaN 99127.9 NaN 8837 2932 11767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11773 55.237 NaN 1258700 35 0 216190 0.327 + -1 YFVSCKSSL 9 97 545.7655737961937 1089.5165946591874 2 546.2561645507812 MULTI HCD FTMS 0 0 0 11772 69160.1953125 0.3395379080579808 -9 0.23950576782226562 1 Carbamidomethyl (C) _YFVSC(Carbamidomethyl (C))KSSL_ REV__ENST00000383314.6_1_18:13762006-13762156:+|nuORF 30.636539890814138 0.10832830463492794 2 [YT]TM{[NV]|[RG]}YAK 9 -1 + 50.409 0 0 4.6267 4.6267 85.191 0 0 0 6.967878587971413 23.427838497011038 6.967878587971413 8.26606256887672 0 0.4247425010840047 0.958607314841775 1.2753187046026264 0 [YT]TM{[NV]|[RG]}YAK;[YT]TM[KG]D{M(Oxidation (M))|F}K;[YT][KG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}S{I|L};[YT]TM[KG]NY{I|L};[YT]TM{[NV]|[RG]}[KA]Y;[YT]T[{M(Oxidation (M))|F}V]{[QG]|[NA]}{M(Oxidation (M))|F}K;[YT]TM[KG][YV]Q;[YT]TM[KG]N{I|L}Y;{[MS]|[{M(Oxidation (M))|F}A]}YDW[Y{I|L}]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{[NV]|[RG]}YAK 4.6267;3.8681;2.5896;2.42;2.4182;2.2197;2.143;1.923;1.8015;1.6776 -;-;-;-;-;-;-;-;-;- 2542 NaN NaN 278813 NaN 8838 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11774 55.242 NaN 583180 35 0 60089 0.261 + 3544 EIPAQRFAL 9 81 522.7953378753259 1043.5761228174517 2 522.7955932617188 MULTI HCD FTMS 0 0 0 11772 242657.609375 0.10350106899410587 9 -0.23275375366210938 2 Unmodified _EIPAQRFAL_ ENSG00000188620|ENST00000357878|HMX3 23.1484247019978 0.1603590852062899 2 [{I|L}A][EP][WD]{I|L}A 8 6 20.868 0 0 1.9996 0 0 0 145.09702627892776 145.09702627892776 5.997483932096875 0 0 0 0 0 1.2218487496163564 1.329689690656103 0 [{I|L}A][EP][WD]{I|L}A 1.9996 - 155 NaN NaN 179346.7 NaN 8839 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11775 55.245 NaN 507150 35 0 44491 0.261 + 18151 MPDGQFKDISL 11 87 633.8052379415474 1265.5959229498947 2 633.8054809570312 MULTI HCD FTMS 0 0 0 11772 280415.0625 0.9353016333753665 -2 0.049053192138671875 3 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 88.5755730146405 0.007365916671688877 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 98.383 0 0 7.7736 7.7736 90.798 0 0 0 4.981979378655865 85.19518583202927 4.981979378655865 9.128498242810991 0 2.055462187404089 0 2.0356668758921828 0.2302046884880938 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DGQ{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DG[AG]{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{[RE]|[WV]}[Y{I|L}]D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{[RE]|[WV]}[Y{I|L}]VE 7.7736;7.0524;5.6041;4.8828;4.6008;3.8795;2.12;1.1167 +;-;-;-;-;-;-;- + 306 NaN NaN 164212.7 NaN 8840 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11776 55.248 NaN 415670 35 0 73790 0.262 + 26089 SPHLEEISL 9 57 512.7682460340162 1023.5219391348325 2 512.769287109375 MULTI HCD FTMS 0 0 0 11772 176487.40625 0.7613047602601831 -3 0.06865310668945312 4 Unmodified _SPHLEEISL_ ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;nc|ENSG00000140853|Q86WI3-4|NLRC5 52.268347100219714 0.028397529699942435 2 SE{I|L}S{I|L} 5 4 58.36 0 0 5.7019 0 0 476.23863417793126 0 476.23863417793126 0 37.62955886981601 0 0 0 1.3807196863200843 0 1.110924374808178 0 SE{I|L}S{I|L} 5.7019 - 190 NaN NaN 143870.1 NaN 8841 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11777 55.252 NaN 286770 35 0 64772 0.261 + -1 PDLLCGQVL 9 50 507.766922816962 NaN 0 507.7770080566406 PEAK HCD FTMS 0 0 0 11772 4669.93994140625 0.6204296763781526 -1 0.0162353515625 5 Carbamidomethyl (C) _PDLLC(Carbamidomethyl (C))GQVL_ REV__ENSG00000198198|ENST00000634258|SZT2;REV__nc|ENSG00000198198|Q5T011-4|SZT2;REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.S1932Rfs*57|1|0.11|ENSG00000198198|chr1:43435262-43435262|T/-|frameshift_variant;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant 10.823927491677226 0.2427956001690155 2 VQEE 4 -1 16.785 0 0 1.6561 0 0 131.07539093106806 394.20969568424067 525.2850866153087 0 0 0 0 0 0 0 0.3252574989159953 0 VQEE 1.6561 - 80 + NaN NaN 130089 NaN 8842 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11778 55.255 NaN 168800 35 0 30113 0.261 + 26942 SYLERHGLINF 11 42 450.2382155000667 1347.6928171004001 3 450.2383728027344 MULTI HCD FTMS 0 0 0 11772 43620.8515625 0.33416133507755325 4 -0.0849151611328125 6 Unmodified _SYLERHGLINF_ ENSG00000004487|ENST00000400181|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF;nc|ENSG00000004487|O60341|KDM1A 6.623454094837244 0.3898724468670146 2 N{M(Oxidation (M))|F} 2 9 23.583 0 0 1.7499 0 0 1068.5729878541094 0 1068.5729878541094 0 19.604093769761874 0 0 0 0.5 0 0 0 + N{M(Oxidation (M))|F} 1.7499 + + 43 + NaN NaN 129187.6 NaN 8843 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11779 55.258 NaN 160160 35 0 11202 0.261 + 33207 YFDMWALI 8 62 529.7536792429954 NaN 0 529.75244140625 PEAK HCD FTMS 0 0 0 11772 31561.541015625 0.9647752596404933 2 -0.042461395263671875 7 Unmodified _YFDMWALI_ REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF 14.581692164780916 0.38795613832665576 2 {I|L}{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.81168 0 0 131.09409594619416 663.2566012018186 794.3506971480128 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.81168 - 9 + NaN NaN 109839.6 NaN 8844 2933 11772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11781 55.263 NaN 922680 35 0 183760 0.327 + -1 EMLDCLLEM 9 72 593.2451923260526 1184.475831718905 2 593.2457885742188 MULTI HCD FTMS 0 0 0 11780 417284.6875 0.8007171075311702 4 -0.09157562255859375 1 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.073929032068715 0.27331982688540024 2 {I|L}V{I|L}DE 5 -1 79.553 0 0 6.7163 0 0 0 612.1472796802622 612.1472796802622 42.183793980228465 0 0 0 0 1.4247425010840047 1.6989700043360187 1.0356668758921828 0 {I|L}V{I|L}DE 6.7163 - 139 + NaN NaN 228569.6 NaN 8845 2934 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11782 55.268 NaN 181750 35 0 16225 0.261 -1 FPDPVDSGTQM 11 57 605.2579956031676 1208.5014382731351 2 605.2581176757812 MULTI HCD FTMS 0 0 0 11780 21614.234375 0.4656364042437777 -3 0.07526016235351562 2 Oxidation (M) _FPDPVDSGTQM(Oxidation (M))_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 22.65808497894818 0.2596617744649775 2 D[Y{I|L}]P{M(Oxidation (M))|F} 5 -1 18.038 0 0 1.4926 0 0 555.268496841372 0 555.268496841372 0 13.433473640373261 0 0 0 0.7887254899964358 0 0.5 0 D[Y{I|L}]P{M(Oxidation (M))|F} 1.4926 - 36 NaN NaN 117510.2 NaN 8846 2934 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11783 55.271 NaN 127600 35 0 10969 0.261 + 14829 LIYFPQNPNR 10 36 631.3372802734375 NaN 0 631.3372802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LIYFPQNPNR_ REV__ENSG00000144057|ENST00000409382|ST6GAL2;REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2 1.4819007175156935 0.33891598740166873 2 E{M(Oxidation (M))|F}Y 3 -1 7.703 0 0 0.61152 0 0 259.1911614436021 558.2670992486936 817.4582606922957 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}Y 0.61152 - 7 + NaN NaN 125069.3 NaN 8847 2934 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11784 55.275 NaN 51418 35 0 5118.3 0.264 -1 0 33 453.20910982163247 452.2018333550325 1 453.209228515625 MULTI HCD FTMS 0 0 0 11780 26136.97265625 0.00952479997516487 38 -0.9876327514648438 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 89773.2 NaN 8848 2934 11780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11786 55.28 NaN 2812800 35 0 211300 0.327 + 34287 YPDRIMNTF 9 115 578.77670921455 NaN 0 578.776611328125 PEAK HCD FTMS 0 0 0 11785 1893291.375 0.7661173227450335 -3 0.058696746826171875 1 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 176.4269993864032 4.766527217695203E-27 2 PDR{M(Oxidation (M))|F}PNT 7 4 65.869 0 0 5.7003 0 0 163.06422511038983 162.0560244195922 325.12024952998206 0 0 0 0 0 2.6549471895720984 0 2.0114393726401687 0.9731975075880328 PDR{M(Oxidation (M))|F}PNT 5.7003 - 3684 + NaN NaN 520766.7 NaN 8849 2935 11785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11787 55.284 NaN 711380 35 0 89982 0.261 -1 VMAPRTLLL 9 87 515.3097338612731 1028.6049147893461 2 515.3098754882812 MULTI HCD FTMS 0 0 0 11785 302685.34375 0.9444029733597682 -1 0.016254425048828125 2 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 21.536976647645854 0.1742816388551942 2 [{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L} 9 -1 + 48.733 0 0 4.7377 4.7377 89.789 0 0 0 15.545092581168767 31.742980164052703 15.545092581168767 24.43234284210589 0 1.3494850021680094 1.2218487496163564 0 0 [{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L};[{I|L}T]C[RP]{I|L}T{I|L}{I|L} 4.7377;2.3625 -;- 289 NaN NaN 197043.1 NaN 8850 2935 11785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11788 55.288 NaN 424640 35 0 85463 0.261 + 5722 FPAGYMYPSM 10 66 598.2430853481478 1194.4716177630955 2 598.2435913085938 MULTI HCD FTMS 0 0 0 11785 189061.984375 0.833515329490886 -3 0.058696746826171875 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 61.357469665136826 0.03648492562855298 2 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 60.182 0 0 5.0384 0 0 64.0092957523744 0 64.0092957523744 0 52.22357194224834 0 0 0 0.9247425010840047 0 2.004432191740108 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.0384 - 225 + NaN NaN 150008.5 NaN 8851 2935 11785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11789 55.291 NaN 318460 35 0 42002 0.261 + 26938 SYLENVDHF 9 55 562.2564349742015 1122.498317015203 2 562.2568359375 MULTI HCD FTMS 0 0 0 11785 136404.578125 0.5173515188868213 5 -0.1378173828125 4 Unmodified _SYLENVDHF_ ENSG00000108509|ENST00000348066|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;nc|ENSG00000108509|O94983-5|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 65.47368725323818 0.010552856507075443 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F} 9 0 + 66.533 0 0 5.9272 5.9272 90.737 0 0 0 3.767186419914097 54.85022798053279 3.767186419914097 15.88090859114196 0 2.742992819099939 0 0 0.5 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}ENVDH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[DV]QDH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[DV][AG]DH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[TA]YQDH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[TA]Y[AG]DH{M(Oxidation (M))|F} 5.9272;4.5124;3.2466;3.0396;2.2193 +;-;-;-;- + 295 NaN NaN 135700.7 NaN 8852 2935 11785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11790 55.294 NaN 159350 35 0 7671.7 0.261 + 19718 NYAQVFNKL 9 77 548.7928296577039 1095.5711063822077 2 548.793701171875 MULTI HCD FTMS 0 0 0 11785 18445.111328125 0.09692754199253999 6 -0.15743255615234375 5 Unmodified _NYAQVFNKL_ ENSG00000136261|ENST00000258761|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF;nc|ENSG00000136261|Q9Y6E2-2|BZW2 34.40172386719151 0.0910440009062557 2 [YN]AQV{M(Oxidation (M))|F}NK{I|L} 9 0 + 36.349 0 0 3.3179 3.3179 85.561 0 0 0 5.095011892927083 21.644483788648067 5.095011892927083 9.208187539523752 0 1.1331596456423734 1.6989700043360187 0 0 + + [YN]AQV{M(Oxidation (M))|F}NK{I|L};[YN]AQV{M(Oxidation (M))|F}GGK{I|L} 3.3179;2.4774 +;- + 70 NaN NaN 106955.6 NaN 8853 2935 11785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11792 55.299 NaN 469380 35 0 28412 0.327 + 1145 AYLEAYKEF 9 79 567.2793801417863 1132.5442073503725 2 568.2625122070312 MULTI HCD FTMS 0 0 0 11791 58297.3984375 0.5450628609904233 3 -0.08205413818359375 1 Unmodified _AYLEAYKEF_ ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 63.227496030279354 0.01306643085373406 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F} 9 0 + 72.495 0 0 6.401 6.401 92.419 0 0 0 11.756820931039158 31.847463005645764 11.756820931039158 24.145650712275923 0 2.8494850021680094 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[Y{M(Oxidation (M))|F}]{I|L}{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}HT[RP]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}AYKE{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[VS]YKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}H[QA]RQ{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[QP]AE{I|L}{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}H[QA]C{I|L}{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}H[QA][VG]Q{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}H[QA]R[AG]{M(Oxidation (M))|F} 6.401;4.2691;4.0427;3.6372;3.4672;3.4469;3.3018;3.0562;2.6339;2.6339 +;-;-;-;-;-;-;-;-;- + 1192 NaN NaN 171789.6 NaN 8854 2936 11791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11793 55.304 NaN 642030 35 0 48330 0.261 -1 0 73 493.9691577798272 1478.8856439396816 3 494.3034362792969 MULTI HCD FTMS 0 0 0 11791 104135.34375 0.5654082887544472 -2 0.0358123779296875 2 NaN NaN 2 {I|L}P 2 -1 36.281 0 0 2.4533 0 0 0 1265.726700591176 1265.726700591176 22.059771852360797 0 0 0 0 0.3807196863200844 1.3010299956639813 0 0 {I|L}P 2.4533 - 35 + NaN NaN 189532 NaN 8855 2936 11791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11794 55.307 NaN 206040 35 0 16634 0.261 + 18263 MPDVDLHL 8 65 478.23139562648873 954.4482383197775 2 478.2312316894531 MULTI HCD FTMS 0 0 0 11791 73495.4296875 0.06678088697347577 -29 0.6763877868652344 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 2 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 56.948 0 0 5.9666 5.9666 86.259 0 0 0 5.823872065994564 5.823872065994564 5.823872065994564 5.823872065994564 0 1.9604093769761874 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE 5.9666;5.3564;3.2978 +;+;- + 112 + NaN NaN 122481.3 NaN 8856 2936 11791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11795 55.31 NaN 212890 35 0 26977 0.261 + 193 AETLAQPLT 9 40 472.258402952514 942.502252971828 2 472.2584533691406 MULTI HCD FTMS 0 0 0 11791 48841.16015625 0.3266588272054559 6 -0.17073440551757812 4 Unmodified _AETLAQPLT_ REV__ENSG00000179588|ENST00000319555|ZFPM1 36.12702656103203 0.08312389501731911 2 QP[{I|L}T] 4 -1 27.109 0 0 2.8763 0 0 485.24805482905305 0 485.24805482905305 0 11.624628150806373 0 0 0 0.8807196863200843 0 0.3252574989159953 0.2742275032520141 QP[{I|L}T] 2.8763 + + 34 + NaN NaN 119078.7 NaN 8857 2936 11791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11796 55.314 NaN 461190 35 0 35076 0.261 + 22851 QYMERLQLL 9 79 605.3182384324014 1208.6219239316026 2 605.3187255859375 MULTI HCD FTMS 0 0 0 11791 121884.9140625 0.12170498845019993 -5 0.11107254028320312 5 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 41.95555342248728 0.056367691549927025 2 Q{I|L}{I|L} 3 6 35.718 0 0 2.9553 0 0 836.3858905133101 0 836.3858905133101 0 14.47621246364342 0 0 0 0.8807196863200843 0 0 1 + Q{I|L}{I|L} 2.9553 + + 198 NaN NaN 159391.6 NaN 8858 2936 11791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11797 55.317 NaN 196950 35 0 8428.9 0.261 + 32503 WFRPAPPSW 9 70 572.2905055654719 1142.5664581977437 2 572.7942504882812 MULTI HCD FTMS 0 0 0 11791 22287.70703125 0.7145804953248239 1 -0.02289581298828125 6 Unmodified _WFRPAPPSW_ ENST00000357166.10_1_X:128975958-128977712:-|nuORF 6.723162845929126 0.3000504726104499 2 SW 2 7 21.766 0 0 1.905 0 0 851.4451030725469 0 851.4451030725469 0 11.308422131034844 0 0 0 0.3807196863200844 0 0 0 + SW 1.905 + + 68 + NaN NaN 111881.6 NaN 8859 2936 11791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11799 55.322 NaN 444930 35 0 39348 0.327 + 1146 AYLEAYKEF 9 66 567.2793801417863 1132.5442073503725 2 567.2796020507812 MULTI HCD FTMS 0 0 0 11798 254113.140625 0.6180669350908982 5 -0.14783859252929688 1 Unmodified _AYLEAYKEF_ ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 110.5527297667825 0.0028521687250969148 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F} 9 0 + 108.03 0 0 9.5387 9.5387 92.724 0 0 0 13.969975784476162 84.12946440024938 13.969975784476162 8.507112333562858 0 3.3494850021680094 1.6989700043360187 0.5941876774005248 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EAYG{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}KE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TH[RP]E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}AYAYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}THA[MN]VN;[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}AYKE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YQ]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[{M(Oxidation (M))|F}D]|MM}G{I|L}S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}AYAYG{I|L}S{M(Oxidation (M))|F} 9.5387;8.7876;6.5858;6.5194;6.2027;6.1005;6.0316;5.9341;5.8347;5.4516 +;-;-;-;-;-;-;-;-;- + 919 NaN NaN 154033.9 NaN 8860 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11800 55.326 NaN 642790 35 0 145300 0.261 + 32721 WPTHEVVL 8 74 490.76361267278435 979.5126724123687 2 490.7744445800781 MULTI HCD FTMS 0 0 0 11798 87995.3515625 0.4414463257332672 5 -0.14783859252929688 2 Unmodified _WPTHEVVL_ ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A 18.13498045792455 0.4603629008820478 2 {I|L}PSS[{I|L}V]D 7 6 67.836 0 0 6.9254 0 0 0 265.1296480768188 265.1296480768188 33.97894779085682 0 0 0 0 0 1.6989700043360187 1.610924374808178 0 {I|L}PSS[{I|L}V]D 6.9254 - 251 + NaN NaN 184954.4 NaN 8861 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11801 55.33 NaN 281140 35 0 21748 0.261 -1 AEQSSWCMF 9 64 552.7097282161102 1103.4049034990203 2 552.7099609375 MULTI HCD FTMS 0 0 0 11798 110459.96875 0.8735161170048619 1 -0.032867431640625 3 Oxidation (M) _AEQSSWCM(Oxidation (M))F_ ENST00000366541.7_1_1:243663268-243663316:+|nuORF 15.847184025352803 0.2234401846867398 2 YS 2 -1 18.711 0 0 1.6958 0 0 688.2302646824172 162.05588709049064 850.2861517729078 0 0 0 0 0 0.4247425010840047 0 0.5 0 YS 1.6958 - 32 + NaN NaN 129256.3 NaN 8862 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11802 55.333 NaN 321360 35 0 26956 0.261 + 3351 EENTNILKF 9 69 554.2875146413054 1106.5604763494107 2 554.2874145507812 MULTI HCD FTMS 0 0 0 11798 100782.0234375 0.809222189128704 1 -0.032867431640625 4 Unmodified _EENTNILKF_ ENSG00000138594|ENST00000308580|TMOD3 51.629811660486645 0.02929079705179888 2 THDD{I|L}K{M(Oxidation (M))|F} 7 6 45.706 0 0 4.1304 0 0 232.1417713849625 0 232.1417713849625 0 28.48258770979733 0 0 0 1.5 0 1.5 0 THDD{I|L}K{M(Oxidation (M))|F} 4.1304 - 158 NaN NaN 139373.8 NaN 8863 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11803 55.337 NaN 165050 35 0 21418 0.263 + 31678 VYKDSFELKF 10 48 425.89215897253825 1274.6546475178147 3 425.8921203613281 MULTI HCD FTMS 0 0 0 11798 47987.92578125 0.3086833353384707 6 -0.17734527587890625 5 Unmodified _VYKDSFELKF_ ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A 23.80106514851385 0.2884848839100546 2 VY 2 8 45.217 0 0 3.5474 0 0 0 1009.4994172228348 1009.4994172228348 25.752574989159953 0 0 0 0 0.4247425010840047 2 0 0 + VY 3.5474 + + 13 + NaN NaN 112909.9 NaN 8864 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11804 55.34 NaN 175940 35 0 15053 0.261 + 16049 LPSGEDYNL 9 49 504.23760439318664 1006.4606558531733 2 504.2376403808594 MULTI HCD FTMS 0 0 0 11798 65670.4375 0.7348348268279155 5 -0.14783859252929688 6 Unmodified _LPSGEDYNL_ ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1 10.073929032068715 0.27331982688540024 2 DYN{I|L} 4 5 35.433 0 0 3.5206 0 0 483.23250014472814 0 483.23250014472814 0 27.361081649832784 0 0 0 0 0 0 0.3494850021680094 + DYN{I|L} 3.5206 + + 23 NaN NaN 111295.5 NaN 8865 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11805 55.343 NaN 262610 35 0 13165 0.261 -1 SEEQLRQLC 9 54 581.7796845148953 1161.5448160965905 2 582.7803344726562 MULTI HCD FTMS 0 0 0 11798 57052.95703125 0.38776068976026923 -8 0.18646240234375 7 Carbamidomethyl (C) _SEEQLRQLC(Carbamidomethyl (C))_ ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 10.823927491677226 0.26684000660059787 2 YAS[Y{I|L}][RD]Q{M(Oxidation (M))|F} 9 -1 + 33.338 0 0 2.8701 2.8701 88.564 0 0 0 11.884249941294065 12.368800006334347 11.884249941294065 33.33790013641491 0 0 0 0 0.3494850021680094 YAS[Y{I|L}][RD]Q{M(Oxidation (M))|F} 2.8701 - 43 + NaN NaN 138535.9 NaN 8866 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11806 55.347 NaN 233840 35 0 65329 0.262 -1 0 57 496.92196354581915 2975.488122475315 6 497.2569580078125 MULTI HCD FTMS 0 0 0 11798 35737.3359375 0.5552192567196264 9 -0.24926376342773438 8 NaN NaN 2 TTNM 4 -1 17.317 0 0 0.58198 0 0 2047.056700604257 478.2424410455688 2525.2991416498257 0 0 0 0 0 0 0 0 0.5 TTNM 0.58198 - 76 + NaN NaN 138289 NaN 8867 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11807 55.35 NaN 595470 35 0 50322 0.261 + 19988 NYIDKVRFL 9 97 584.3292495682689 1166.6439462033377 2 584.3289184570312 MULTI HCD FTMS 0 0 0 11798 69948.5 0.018844511664113824 -6 0.13396835327148438 9 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 99.75527289724121 0.004270341300239591 2 [YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F} 9 2 + 90.729 0 0 7.7769 7.7769 95.386 0 0 0 76.74919076937762 12.976599227271848 12.976599227271848 30.31234684152075 0 2.004432191740108 2 0.6861818737241735 0 [YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F};{I|L}[YN]DKVR{I|L}{M(Oxidation (M))|F} 7.7769;5.1786 -;- 496 + NaN NaN 202906.7 NaN 8868 2937 11798 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11809 55.355 NaN 629090 35 0 83442 0.327 + 29766 VEDIIIHTF 9 76 543.7953851001837 NaN 0 543.784423828125 PEAK HCD FTMS 0 0 0 11808 18381.8984375 0.8719234381283879 -1 0.032867431640625 1 Unmodified _VEDIIIHTF_ REV__ENSG00000156414|ENST00000409874|TDRD9;REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 26.88365393820708 0.14119366324382274 2 PD{I|L}EN 5 -1 34.68 0 0 3.1947 0 0 131.0615524458537 383.2404879205688 514.3020403664225 0 0 0 0 0 0.2742275032520141 0 0.6989700043360187 0 PD{I|L}EN 3.1947 - 305 + NaN NaN 198232.9 NaN 8869 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11810 55.359 NaN 177680 35 0 40366 0.261 + 19424 NPLHLDYVM 9 55 559.2703814400484 1116.5262099468966 2 559.271240234375 MULTI HCD FTMS 0 0 0 11808 82416.3203125 0.669354735347218 4 -0.11497116088867188 2 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1 49.93300154707207 0.03166451819912738 2 [HV][QP]{I|L}DYV{M(Oxidation (M))|F} 9 4 + 42.941 0 0 3.8459 3.8459 89.754 0 0 0 1.3984746084197752 27.456218573302493 1.3984746084197752 42.940768638342774 0 1.9489700043360187 0 0.3494850021680094 0.7614393726401688 [HV][QP]{I|L}DYV{M(Oxidation (M))|F} 3.8459 - 71 NaN NaN 111387 NaN 8870 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11811 55.363 NaN 324650 35 0 25463 0.261 + 4234 EVFDKTYQF 9 74 588.7813732237325 1175.548193514265 2 588.7822875976562 MULTI HCD FTMS 0 0 0 11808 96917.6875 0.7919164094391118 -1 0.032867431640625 3 Unmodified _EVFDKTYQF_ ENSG00000124541|ENST00000244496|RRP36;nc|ENSG00000124541|Q96EU6-2|RRP36 61.60191391372663 0.015340508911304802 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DKTYQ{M(Oxidation (M))|F} 9 0 + 63.08 0 0 5.366 5.366 89.136 0 0 0 30.583815087875557 13.46787486224656 13.46787486224656 12.703037561203843 0 1.1549471895720984 1.3979400086720375 0.3494850021680094 0.5796896906561032 + + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DKTYQ{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DKTY[AG]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}]Q{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}K[HM]W;{NN|[MP]|[D{I|L}]|[EV]}[WQ][WR]SW;{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}V]TK[HM]W;{NN|[MP]|[D{I|L}]|[EV]}[WQ]Q{[ET]|[MV]}AW;{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}TKD[NG]W;{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}T[QP]VE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]R[PA]{[{M(Oxidation (M))|F}H]|[RQ]}SW 5.366;4.2854;3.5975;3.1983;2.9445;2.901;2.6839;2.602;2.3182;1.5176 +;-;-;-;-;-;-;-;-;- + 531 + NaN NaN 160674 NaN 8871 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11812 55.366 NaN 498030 35 0 228880 0.263 + 30136 VGGDIHALL 9 43 447.7556146498503 893.4966763665007 2 447.7557678222656 MULTI HCD FTMS 0 0 0 11808 82434.1640625 1 0 0 4 Unmodified _VGGDIHALL_ REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1 11.640296217721598 0.25978676193971967 2 A{I|L}{I|L} 3 -1 34.253 0 0 3.8335 0 0 578.2808094709 0 578.2808094709 0 34.25250945692483 0 0 0 0.805462187404089 0 0 0 A{I|L}{I|L} 3.8335 + + 8 NaN NaN 160655.2 NaN 8872 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11813 55.37 NaN 107840 35 0 5628.1 0.261 + 27991 TFKELANEF 9 48 549.7761777679614 1097.5378026027226 2 549.7769775390625 MULTI HCD FTMS 0 0 0 11808 32635.69140625 0.746104883948238 -3 0.07532119750976562 5 Unmodified _TFKELANEF_ ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 26.020703789607367 0.13554323117744113 2 [{M(Oxidation (M))|F}E][{I|L}T]KANE{M(Oxidation (M))|F} 9 4 + 37.101 0 0 3.3804 3.3804 85.643 0 0 0 0.915149811213503 20.111075038854487 0.915149811213503 9.208187539523756 0 0.4247425010840047 0 0 0 [{M(Oxidation (M))|F}E][{I|L}T]KANE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][{I|L}T]KAGGE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]KNKAC(Carbamidomethyl (C)){[ET]|[MV]};[{M(Oxidation (M))|F}T]KNKAM{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}E][{I|L}T]KAM{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}T]KNKA[CG]{[ET]|[MV]};[{M(Oxidation (M))|F}T]KNK[KC]{[ET]|[MV]} 3.3804;2.5414;2.0757;1.9828;1.6719;1.2368;0.64159 -;-;-;-;-;-;- 85 NaN NaN 97604.3 NaN 8873 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11814 55.373 NaN 91192 35 0 7134.2 0.263 + 5003 FCGGMYSCQQS 11 39 404.149139479166 NaN 0 404.1584777832031 PEAK HCD FTMS 0 0 0 11808 4491.890625 0.8496583501167342 1 -0.0262908935546875 6 Unmodified _FCGGMYSCQQS_ REV__ENSG00000185739|ENST00000399609|SRL;REV__nc|ENSG00000185739|Q86TD4-1|SRL;REV__nc|ENSG00000185739|Q86TD4-3|SRL 1.214830529360525 0.33867401910978034 2 T 1 -1 3.4949 0 0 0.43345 0 0 232.56578276516956 469.6412752740844 702.207058039254 0 0 0 0 0 0 0 0 0 T 0.43345 - 2 + NaN NaN 115847.2 NaN 8874 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11815 55.376 NaN 274720 35 0 31855 0.261 -1 CRRHGVSSW 9 64 572.7747896157396 1143.535026298279 2 573.7652587890625 MULTI HCD FTMS 0 0 0 11808 15038.90234375 0.044991205469567815 -6 0.1340179443359375 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))RRHGVSSW_ ENST00000373580.7_1_9:127573745-127573916:+|nuORF 13.90604991867851 0.24021115267848145 2 SV[QA][YT]SW 8 -1 34.188 0 0 2.9896 0 0 203.0884312530464 0 203.0884312530464 0 26.740247145042062 0 0 0 0.805462187404089 0 0.3494850021680094 0.3252574989159953 SV[QA][YT]SW 2.9896 - 135 + NaN NaN 151709.5 NaN 8875 2938 11808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11817 55.381 NaN 753960 35 0 138770 0.327 + 16621 LVVHVEPAL 9 69 488.795021957344 975.575490981488 2 488.7950744628906 MULTI HCD FTMS 0 0 0 11816 487247.65625 1 0 0 1 Unmodified _LVVHVEPAL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 92.8221339359638 0.0044520161739443126 2 {I|L}VVHVEPA{I|L} 9 0 + 82.374 0 0 8.4436 8.4436 94.754 0 0 0 59.07312836760731 8.384767769392738 8.384767769392738 14.534021960761265 0 2.5994850021680094 1.5228787452803376 1.1307196863200843 0 + + {I|L}VVHVEPA{I|L};[{I|L}V]VHVEPA{I|L};{I|L}V[H{I|L}][DV]PA{I|L};[{I|L}V]VHVE{I|L}[PA];[{I|L}V][HD][{I|L}V]PA{I|L};[{I|L}V][HD]P[{I|L}V]A{I|L};[{I|L}V][HD]P[{I|L}A]V{I|L};[{I|L}V][HD]P{[VA]|[{I|L}G]}{I|L}{I|L};[{I|L}V][HD][{I|L}V]{I|L}[PA];{NN|[MP]|[D{I|L}]|[EV]}[HV][{I|L}V]PA{I|L} 8.4436;6.9538;5.3201;4.5743;4.2094;2.7187;2.18;2.0519;1.8298;1.6468 +;+;-;-;-;-;-;-;-;- + 313 + NaN NaN 209261.2 NaN 8876 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11818 55.386 NaN 1159800 35 0 128740 0.261 + 28396 TPFHEIMSL 9 110 545.7655737961937 1089.5165946591874 2 546.2559814453125 MULTI HCD FTMS 0 0 0 11816 167891.171875 0.8242518261011512 -3 0.08205413818359375 2 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 88.95385435242217 0.004553379958619559 2 [YR]YE{I|L}{M(Oxidation (M))|F}S{I|L} 8 4 + 54.664 0 0 5.0172 5.0172 84.292 0 0 0 0.9199419632364823 24.271081482726373 0.9199419632364823 4.659394387005584 0 1.4916440611282626 0 1.1421590589602533 0.5752574989159953 [YR]YE{I|L}{M(Oxidation (M))|F}S{I|L};[TP]{M(Oxidation (M))|F}HE{I|L}{M(Oxidation (M))|F}S{I|L};YRYE{I|L}TV{M(Oxidation (M))|F};YRYE{I|L}{M(Oxidation (M))|F}S{I|L};Y{M(Oxidation (M))|F}AN[KT]TV{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}AN[KT]{M(Oxidation (M))|F}S{I|L};[EP][PG]{[QC]|[C(Carbamidomethyl (C))A]}{I|L}TV{M(Oxidation (M))|F};[YT]T{I|L}{[QC]|[C(Carbamidomethyl (C))A]}YAK;[EP][PG]{[NV]|[RG]}MTV{M(Oxidation (M))|F};[YT]TM{[NV]|[RG]}YAK 5.0172;4.5896;3.6882;3.4502;3.4348;3.1968;2.933;2.9196;2.9068;2.8934 -;+;-;-;-;-;-;-;-;- + 3264 NaN NaN 269158.5 NaN 8877 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11819 55.389 NaN 332650 35 0 29454 0.261 + 18152 MPDGQFKDISL 11 78 633.8052379415474 1265.5959229498947 2 633.8055419921875 MULTI HCD FTMS 0 0 0 11816 208231.46875 0.6945391274836622 4 -0.11818695068359375 3 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 62.78007862980855 0.028938133146045417 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 78.919 0 0 6.2357 6.2357 92.585 0 0 0 4.981979378655865 71.13222635659152 4.981979378655865 29.24865027867404 0 2.3494850021680094 0 1.5994850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L} 6.2357;3.9246 +;- + 148 NaN NaN 141975.1 NaN 8878 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11820 55.393 NaN 1883900 35 0 183250 0.261 + 19989 NYIDKVRFL 9 114 584.3292495682689 1166.6439462033377 2 584.3299560546875 MULTI HCD FTMS 0 0 0 11816 644202.1875 0.17355162207040023 -4 0.10161209106445312 4 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 137.42381684818497 0.00015474832393368816 2 [YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F} 9 2 + 99.405 0 0 8.5206 8.5206 94.839 0 0 0 84.35104413662087 14.09256854528806 14.09256854528806 14.488226578884394 0 2.2638793319624577 2 0.6694451763165201 0.5 [YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F};{I|L}YNDKVR{I|L}{M(Oxidation (M))|F};[YN]{I|L}{I|L}[QT]R{I|L}{M(Oxidation (M))|F};{I|L}YN{I|L}[QT]R{I|L}{M(Oxidation (M))|F};[YN]{I|L}[RV]{I|L}{I|L}[YN];[YN]{I|L}{I|L}{[VA]|[{I|L}G]}[H{I|L}][QP];[Y{I|L}]N[RV]{I|L}{I|L}[YN];{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[RV]{I|L}{I|L}[YN] 8.5206;7.2787;5.9972;4.7553;3.0416;1.4269;0.91346;0.47388 -;-;-;-;-;-;-;- 3262 + NaN NaN 387211.7 NaN 8879 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11821 55.396 NaN 288930 35 0 57443 0.261 + 8979 HPDYSFGEL 9 59 532.7381408646033 1063.4617287960066 2 532.7379150390625 MULTI HCD FTMS 0 0 0 11816 125243.9609375 0.7439603673499997 -2 0.0591583251953125 5 Unmodified _HPDYSFGEL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1 43.85829265575387 0.04763305254408404 2 S{M(Oxidation (M))|F}GE{I|L} 5 4 56.938 0 0 5.354 0 0 512.1996265463335 0 512.1996265463335 0 46.48062535455438 0 0 0 1.1989700043360187 0 0.8494850021680094 0 + S{M(Oxidation (M))|F}GE{I|L} 5.354 + + 71 NaN NaN 135804.9 NaN 8880 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11822 55.399 NaN 299090 35 0 26590 0.261 + 22307 QPFREAIAL 9 76 522.7953378753259 1043.5761228174517 2 522.7958374023438 MULTI HCD FTMS 0 0 0 11816 66600.8828125 0.028407362063771764 15 -0.4099006652832031 6 Unmodified _QPFREAIAL_ ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 4.3292370932331545 0.3181982124262546 2 A{I|L}YT 4 7 10.177 0 0 0.97523 0 0 148.11994661804857 444.21198450260005 592.3319311206486 0 0 0 0 0 0 0 0 0 A{I|L}YT 0.97523 - 112 + NaN NaN 131574.2 NaN 8881 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11823 55.402 NaN 203040 35 0 15802 0.261 + 3352 EENTNILKF 9 60 554.2875146413054 1106.5604763494107 2 554.2872314453125 MULTI HCD FTMS 0 0 0 11816 74739.8671875 0.6001185219124395 3 -0.08868026733398438 7 Unmodified _EENTNILKF_ ENSG00000138594|ENST00000308580|TMOD3 32.78568957990786 0.09846250359632436 2 K[C(Carbamidomethyl (C))R]WK{M(Oxidation (M))|F} 6 7 34.526 0 0 3.1201 0 0 183.08832166366693 0 183.08832166366693 0 25.573193899842437 0 0 0 0.7614393726401688 0 0 0 K[C(Carbamidomethyl (C))R]WK{M(Oxidation (M))|F} 3.1201 - 87 + NaN NaN 118181.8 NaN 8882 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11824 55.406 NaN 322570 35 0 42082 0.261 + 35246 YVQDYEDFM 9 57 613.2396618116635 1224.464770690127 2 613.2393798828125 MULTI HCD FTMS 0 0 0 11816 74187.3828125 0.623931640217425 -1 0.0262908935546875 8 Oxidation (M) _YVQDYEDFM(Oxidation (M))_ CTDSPL2-EIF3J|1|fusion;ENSG00000104131|ENST00000261868|EIF3J;nc|ENSG00000104131|O75822-2|EIF3J;nc|ENSG00000104131|O75822-3|EIF3J 53.40400417844725 0.026808823219830042 2 DYED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 60.878 0 0 4.9718 0 0 390.18977553535314 0 390.18977553535314 0 53.888662832205014 0 0 0 2.274227503252014 0 0 0 + DYED{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9718 + + 86 NaN NaN 133072.9 NaN 8883 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11825 55.409 NaN 343410 35 0 20038 0.262 + 29123 TYIESASEL 9 82 506.7455339240153 1011.4765149148307 2 506.7362976074219 MULTI HCD FTMS 0 0 0 11816 51305.640625 0.740388877890304 -3 0.08205413818359375 9 Unmodified _TYIESASEL_ ENSG00000158089|ENST00000349752|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14 74.92900055777586 0.007493270374442853 2 [YT]{I|L}TDASE{I|L} 9 2 + 56.606 0 0 5.5964 5.5964 90.935 0 0 0 8.21211225000966 45.6373714550852 8.21211225000966 21.765997036641586 0 1.370371515030528 1.3979400086720375 0.6861818737241735 0 [YT]{I|L}TDASE{I|L};{[QN]|[E{I|L}]|[KN]}S[YT]ASE{I|L};[YT]{I|L}TDA{[ET]|[MV]}V;{[QN]|[E{I|L}]|[KN]}[HV]WSE{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}[YT]ASE{I|L};{[ES]|[DT]|[{I|L}C]}{[SA]|[TG]}{I|L}TYE{I|L};{[QN]|[E{I|L}]|[KN]}S[YT]A{[ET]|[MV]}V;{[QN]|[E{I|L}]|[KN]}[HV]W{[ET]|[MV]}V;{[QN]|[E{I|L}]|[KN]}S{[SA]|[TG]}TYE{I|L};{[QN]|[E{I|L}]|[KN]}S[YT][RP]{M(Oxidation (M))|F} 5.5964;3.4445;3.261;3.2479;3.1469;1.2476;1.1091;0.91254;0.9021;0.85337 -;-;-;-;-;-;-;-;-;- 695 NaN NaN 131407.1 NaN 8884 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11826 55.412 NaN 59248 35 0 3971 0.261 + 3995 ERKYLKDWDI 10 50 455.9085998535156 NaN 0 455.9085998535156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _ERKYLKDWDI_ REV__ENSG00000072133|ENST00000262752|RPS6KA6;REV__nc|ENSG00000072133|Q9UK32-2|RPS6KA6 0.6268255596534771 0.33964781322640114 2 {M(Oxidation (M))|F} 1 -1 0.48455 0 0 0.053259 0 0 466.64402997871247 293.10801111392817 759.7520410926406 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.053259 - 1 + NaN NaN 91427.5 NaN 8885 2939 11816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11828 55.417 NaN 938640 35 0 133840 0.327 + 16585 LVGDDEHNPCS 11 82 593.2451923260526 1184.475831718905 2 593.2456665039062 MULTI HCD FTMS 0 0 0 11827 315454.28125 0.605317298255341 10 -0.2622566223144531 1 Unmodified _LVGDDEHNPCS_ REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF 8.155526934196011 0.3831532958467648 2 {I|L}V{I|L}DE 5 -1 70.904 0 0 5.9861 0 0 0 612.1450899713499 612.1450899713499 37.85666875892183 0 0 0 0 1.6237125054200234 1.6989700043360187 0.75 0 {I|L}V{I|L}DE 5.9861 - 182 + NaN NaN 237259.4 NaN 8886 2940 11827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11829 55.422 NaN 1254300 35 0 238590 0.261 + 28029 TFYERGVSW 9 96 572.7747896157396 1143.535026298279 2 572.7750244140625 MULTI HCD FTMS 0 0 0 11827 442693.3125 0.2834689694999718 -4 0.11825942993164062 2 Unmodified _TFYERGVSW_ ENST00000570096.1_1_20:37590616-37590736:-|nuORF 43.85829265575387 0.04763305254408404 2 SVSE{M(Oxidation (M))|F}VSW 8 5 67.649 0 0 5.9158 0 0 204.09073994466831 0 204.09073994466831 0 46.53486796748324 0 0 0 0.5 0 1.7803695511246982 0 SVSE{M(Oxidation (M))|F}VSW 5.9158 - 616 + NaN NaN 273968 NaN 8887 2940 11827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11830 55.425 NaN 267660 35 0 32533 0.261 -1 MPVMEQSVL 9 59 525.2539350767738 1048.4933172203475 2 525.2539672851562 MULTI HCD FTMS 0 0 0 11827 109699.1640625 0.8255455546864601 -4 0.11825942993164062 3 Oxidation (M) _M(Oxidation (M))PVMEQSVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 18.1463463914782 0.20357593197100715 2 SV{I|L} 3 -1 39.253 0 0 3.7437 0 0 731.2999110356031 0 731.2999110356031 0 23.767959391884546 0 0 0 0.5 0 0.805462187404089 0 SV{I|L} 3.7437 + + 95 NaN NaN 139538.3 NaN 8888 2940 11827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11831 55.429 NaN 41788 35 0 4966 0.262 + 12165 KKKKKKVKKI 10 31 419.31559279656494 NaN 0 419.3156433105469 PEAK HCD FTMS 0 0 0 11827 45614.8359375 0.5012502713922092 89 -2.357269287109375 4 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111013 NaN 8889 2940 11827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11832 55.432 NaN 116160 35 0 12313 0.261 + 24949 RYTALQAFKF 10 43 622.8430011935347 1243.6714494538694 2 622.84423828125 MULTI HCD FTMS 0 0 0 11827 41732.45703125 0.6465444562407449 2 -0.0524749755859375 5 Unmodified _RYTALQAFKF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 6.1918466704503565 0.44252927588099017 2 QA{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 5 5 33.443 0 0 2.6891 0 0 604.3241444318375 0 604.3241444318375 0 29.948500216800937 0 0 0 0 0 0 0 + QA{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 2.6891 + + 16 NaN NaN 126989.2 NaN 8890 2940 11827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11834 55.437 NaN 2108000 35 0 164880 0.327 + 34288 YPDRIMNTF 9 115 578.77670921455 NaN 0 578.7767944335938 PEAK HCD FTMS 0 0 0 11833 1488173.875 0.6021871751748208 3 -0.0851898193359375 1 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 176.4269993864032 4.766527217695203E-27 2 PDR{M(Oxidation (M))|F}PNT 7 4 69.815 0 0 6.0418 0 0 163.06443472447694 162.05634485416252 325.1207795786395 0 0 0 0 0 2.610924374808178 0 1.9698565171985374 1.2104093769761874 PDR{M(Oxidation (M))|F}PNT 6.0418 - 3139 + NaN NaN 401016.8 NaN 8891 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11835 55.441 NaN 584710 35 0 87382 0.261 + 5723 FPAGYMYPSM 10 88 598.2430853481478 1194.4716177630955 2 598.2437744140625 MULTI HCD FTMS 0 0 0 11833 199362.71875 0.8789280550314498 3 -0.0851898193359375 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 5 + 65.547 0 0 5.4875 5.4875 90.344 0 0 0 8.8124854085074 8.8124854085074 8.8124854085074 18.059910419347446 0 2.094187677400525 1.5228787452803376 0.3054621874040891 0 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PK[PG][EC]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}DK[PG][EC]PS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F} 5.4875;3.9755;3.8267;3.7637;3.7637;3.5994;2.2202;1.8505;1.7647;1.5018 -;-;-;-;-;-;-;-;-;- 640 NaN NaN 180576.8 NaN 8892 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11836 55.445 NaN 588290 35 0 47901 0.262 -1 0 62 493.9691577798272 1478.8856439396816 3 493.96942138671875 MULTI HCD FTMS 0 0 0 11833 209534.640625 0.9381071277219531 2 -0.062366485595703125 3 NaN NaN 2 {I|L}P 2 -1 37.251 0 0 2.5188 0 0 0 1265.7255964899107 1265.7255964899107 30.260847058321687 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 {I|L}P 2.5188 - 27 + NaN NaN 177790.6 NaN 8893 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11837 55.448 NaN 412310 35 0 59566 0.261 + 10512 IPEPASPQL 9 53 476.2610175485856 950.5074821639712 2 476.2610778808594 MULTI HCD FTMS 0 0 0 11833 141696.9375 0.7546621709505539 -2 0.055820465087890625 4 Unmodified _IPEPASPQL_ ENSG00000137337|ENST00000376406|MDC1;ENST00000489540.1_1_6:30671361-30671724:-|nuORF;nc|ENSG00000137337|Q14676-2|MDC1;nc|ENSG00000137337|Q14676-3|MDC1 34.40172386719151 0.0910440009062557 2 SPQ{I|L} 4 5 40.165 0 0 4.2256 0 0 507.2673657326173 0 507.2673657326173 0 20.70107520596089 0 0 0 0.5 0 0.7742275032520141 0 + SPQ{I|L} 4.2256 + + 48 NaN NaN 153138.3 NaN 8894 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11838 55.452 NaN 609530 35 0 52124 0.261 + 4235 EVFDKTYQF 9 101 588.7813732237325 1175.548193514265 2 588.7695922851562 MULTI HCD FTMS 0 0 0 11833 57637.63671875 0.47095831004911676 2 -0.062366485595703125 5 Unmodified _EVFDKTYQF_ ENSG00000124541|ENST00000244496|RRP36;nc|ENSG00000124541|Q96EU6-2|RRP36 32.78568957990786 0.09846250359632436 2 SVSYYPAW 8 8 36.107 0 0 3.0715 0 0 204.11451345439065 0 204.11451345439065 0 0.18954998148707602 0 0 0 0 0 1.274227503252014 0 SVSYYPAW 3.0715 - 1618 + NaN NaN 182686.1 NaN 8895 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11839 55.455 NaN 254600 35 0 22650 0.261 + 21502 PYGDIVDDEL 10 80 568.2614445507492 1134.5083361682982 2 568.2615966796875 MULTI HCD FTMS 0 0 0 11833 82776.1796875 0.48574670617795246 17 -0.45900726318359375 6 Unmodified _PYGDIVDDEL_ REV__ENSG00000137869|ENST00000396402|CYP19A1 14.838274106304384 0.3723198072575719 2 QE{I|L} 3 -1 23.812 0 0 2.0989 0 0 746.278123924025 0 746.278123924025 0 4.348331157524967 0 0 0 0 0 0 0 QE{I|L} 2.0989 - 244 NaN NaN 124448.6 NaN 8896 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11840 55.458 NaN 138800 35 0 19732 0.262 + 10580 IPLHEELL 8 48 482.2792607038513 962.5439684745027 2 482.27911376953125 MULTI HCD FTMS 0 0 0 11833 59467.93359375 0.5207685656166112 -3 0.08211135864257812 7 Unmodified _IPLHEELL_ ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3 24.67388899826682 0.4122521268485776 2 YP{I|L}{I|L} 4 5 32.167 0 0 3.3419 0 0 458.2696705548844 0 458.2696705548844 0 26.682437647924218 0 0 0 0.5 0 0 0 YP{I|L}{I|L} 3.3419 - 30 NaN NaN 95653.5 NaN 8897 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11841 55.462 NaN 65491 35 0 24661 0.261 -1 0 34 442.1972253000305 441.1899488334305 1 442.19708251953125 MULTI HCD FTMS 0 0 0 11833 41676.91796875 0.5303815481369893 5 -0.13428497314453125 8 NaN NaN 2 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 3 -1 + 20.458 0 0 4.6369 4.6369 89.309 0 0 0 6.962724883926654 20.457574905606748 6.962724883926654 20.457574905606748 0 0 0 0 0 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 4.6369 - 5 NaN NaN 102465.6 NaN 8898 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11842 55.465 NaN 115380 35 0 11812 0.261 + -1 LDHRCAPCSF 10 49 421.518349612853 1261.533219438759 3 421.5184631347656 MULTI HCD FTMS 0 0 0 11833 28448.146484375 0.8760604950812516 1 -0.03285980224609375 9 2 Carbamidomethyl (C) _LDHRC(Carbamidomethyl (C))APC(Carbamidomethyl (C))SF_ REV__ENSG00000147854|ENST00000276893|UHRF2 0.776531954647913 0.4711933975711956 2 {I|L}{I|L} 2 -1 16.198 0 0 1.284 0 0 1017.3548664421612 0 1017.3548664421612 0 1.593793813122062 0 0 0 0 0 0 0 {I|L}{I|L} 1.284 - 8 NaN NaN 97382.6 NaN 8899 2941 11833 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11844 55.47 NaN 1725400 35 0 183360 0.327 + 22852 QYMERLQLL 9 110 605.3182384324014 1208.6219239316026 2 605.3186645507812 MULTI HCD FTMS 0 0 0 11843 953634.75 0.9522270014067953 1 -0.029506683349609375 1 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 133.0521902211835 0.0004198702180815479 2 [{M(Oxidation (M))|F}E][YQ]R{I|L}Q{I|L}{I|L} 9 4 + 62.602 0 0 5.1796 5.1796 85.133 0 0 0 0.3369705738801514 34.330398731020864 0.3369705738801514 6.238574461170749 0 1.7059771852360797 0 1.4832881222565253 2.3252574989159953 [{M(Oxidation (M))|F}E][YQ]R{I|L}Q{I|L}{I|L};[YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L};[{M(Oxidation (M))|F}E][YQ]R{I|L}[AG]{I|L}{I|L};{[QG]|[NA]}[C(Carbamidomethyl (C))K]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Q{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[DS]|[MA]|[CV]|TT}[R{M(Oxidation (M))|F}]{I|L}Q{I|L}{I|L};{[QG]|[NA]}[C(Carbamidomethyl (C))K]{I|L}{[{M(Oxidation (M))|F}C]|[YS]}Q{I|L}{I|L};[YQ]{M(Oxidation (M))|F}ER{I|L}[AG]{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}]Q{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}][AG]{I|L}{I|L};[Q{I|L}]RE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YQ]{I|L} 5.1796;4.6634;4.4177;4.2958;3.7554;3.755;3.5865;3.5464;2.7846;0.10237 -;+;-;-;-;-;-;-;-;- + 1018 NaN NaN 353410 NaN 8900 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11845 55.474 NaN 1295900 35 0 240370 0.261 + 30435 VLPKLYVKL 9 81 536.8600722324053 1071.7055915316105 2 536.8602905273438 MULTI HCD FTMS 0 0 0 11843 513476.4375 0.6661218368098499 -3 0.08868026733398438 2 Unmodified _VLPKLYVKL_ ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11 41.8396318013385 0.056899836730939755 2 {I|L}V{I|L}[KP]YVK{I|L} 9 2 + 61.877 0 0 5.7737 5.7737 84.865 0 0 0 42.35908341002833 6.879617791072832 6.879617791072832 3.0102999566398125 0 1.5044321917401078 2 0 0 {I|L}V{I|L}[KP]YVK{I|L};{I|L}VP[K{I|L}]YVK{I|L};V{I|L}{I|L}[KP]YVK{I|L};V{I|L}P[K{I|L}]YVK{I|L};[{I|L}V]Y[KP]{I|L}VK{I|L};[{I|L}V]Y[KP]{I|L}KV{I|L};[{I|L}V]Y[KP]K{I|L}V{I|L};[KP]{I|L}YV{I|L}VK{I|L};[KP]{I|L}YV{I|L}KV{I|L};[KP]{I|L}YVK{I|L}V{I|L} 5.7737;5.4928;5.4928;5.2119;4.6221;4.1317;4.1104;2.9155;2.4251;2.4037 -;-;-;+;-;-;-;-;-;- + 177 + NaN NaN 293326.4 NaN 8901 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11846 55.478 NaN 1051300 35 0 88826 0.261 + 28397 TPFHEIMSL 9 115 545.7655737961937 1089.5165946591874 2 545.7657470703125 MULTI HCD FTMS 0 0 0 11843 305549.53125 0.8618592074102235 3 -0.071868896484375 3 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 88.95385435242217 0.004553379958619559 2 [TP]{M(Oxidation (M))|F}HE{I|L}{M(Oxidation (M))|F}S{I|L} 9 0 + 50.862 0 0 4.6683 4.6683 89.119 0 0 0 1.3925220104557923 17.56504127105498 1.3925220104557923 18.2319095436452 0 1.6593793813122064 0 1.1237125054200234 0 + + [TP]{M(Oxidation (M))|F}HE{I|L}{M(Oxidation (M))|F}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[KC]GTS{I|L};[Y{M(Oxidation (M))|F}]AT[KC]GTS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[C(Carbamidomethyl (C))K]TS{I|L};[YR]YE{I|L}{M(Oxidation (M))|F}S{I|L};[Y{M(Oxidation (M))|F}]AT[C(Carbamidomethyl (C))K]TS{I|L};[RH]S{[NV]|[RG]}M{M(Oxidation (M))|F}S{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QS]|[NT]}YAK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]TS{I|L};N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KT]{M(Oxidation (M))|F}S{I|L} 4.6683;2.9949;2.8333;2.8333;2.7993;2.6716;2.6518;2.5375;2.4639;2.3031 +;-;-;-;-;-;-;-;-;- + 4354 NaN NaN 241367.6 NaN 8902 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11847 55.481 NaN 261180 35 0 22654 0.261 -1 VMAPRTLLL 9 54 515.3097338612731 1028.6049147893461 2 515.3099975585938 MULTI HCD FTMS 0 0 0 11843 88025.78125 0.27464762090852485 6 -0.15729904174804688 4 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 2 AD{I|L} 3 -1 33.188 0 0 3.2265 0 0 711.4629452226284 0 711.4629452226284 0 16.197887582883936 0 0 0 1 0 0 0 AD{I|L} 3.2265 - 53 NaN NaN 127260.9 NaN 8903 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11848 55.484 NaN 580330 35 0 74270 0.262 + 20336 NYRCFGSFRA 10 75 407.52590055445467 1219.555872263564 3 407.5260009765625 MULTI HCD FTMS 0 0 0 11843 125855.6875 0.6658596206100957 -1 0.03285980224609375 5 Unmodified _NYRCFGSFRA_ ENSG00000242019|ENST00000291860|KIR3DL3;nc|ENSG00000242019|Q8N743|KIR3DL3 10.898955630103616 0.4091668631510381 2 SA 2 8 17.959 0 0 1.4726 0 0 0 1058.4500279927568 1058.4500279927568 3.2660625688767198 0 0 0 0 0 0 0 0 SA 1.4726 - 31 + NaN NaN 172541.2 NaN 8904 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11849 55.488 NaN 369200 35 0 39884 0.261 + 29694 VCSHQDKEKG 10 72 565.7674825272238 1129.5204121212475 2 565.7670288085938 MULTI HCD FTMS 0 0 0 11843 145756.84375 0.7281212870719113 -4 0.11497116088867188 6 Unmodified _VCSHQDKEKG_ ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-2|SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;SLC45A2|p.L180I|1|0.56|ENSG00000164175|chr5:33982260-33982260|G/T|missense_variant 21.536976647645854 0.3096624038397699 2 VCSVS 5 7 45.578 0 0 4.0352 0 0 0 651.2911471002561 651.2911471002561 29.54750954047803 0 0 0 0 1 0 1.079689690656103 0 VCSVS 4.0352 - 189 + NaN NaN 159693.1 NaN 8905 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11850 55.491 NaN 312030 35 0 15427 0.261 + 29124 TYIESASEL 9 68 506.7455339240153 1011.4765149148307 2 506.74615478515625 MULTI HCD FTMS 0 0 0 11843 69295.53125 1 0 0 7 Unmodified _TYIESASEL_ ENSG00000158089|ENST00000349752|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14 74.92900055777586 0.007493270374442853 2 [YT]{I|L}{[ES]|[DT]|[{I|L}C]}ASE{I|L} 9 0 + 49.037 0 0 4.8481 4.8481 84.899 0 0 0 1.3765948088248692 30.453582354682958 1.3765948088248692 6.817496819840656 0 1.416386562212267 1.3979400086720375 0.6747425010840047 0 + + [YT]{I|L}{[ES]|[DT]|[{I|L}C]}ASE{I|L};[YT]T{NN|[MP]|[D{I|L}]|[EV]}ASE{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}[YT]ASE{I|L};{[QN]|[E{I|L}]|[KN]}S[YT]ASE{I|L};[YN]{I|L}HHSE{I|L};[YT]T{NN|[MP]|[D{I|L}]|[EV]}[RP]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}S[YT][RP]{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 4.8481;4.1741;3.7951;3.2263;3.1463;1.7777;0.82992;0.38212 +;-;-;-;-;-;-;- + 720 NaN NaN 144290.7 NaN 8906 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11851 55.494 NaN 265190 35 0 41028 0.261 + 33502 YIDKVRFL 8 76 527.3080369097315 1052.601520886263 2 527.3085327148438 MULTI HCD FTMS 0 0 0 11843 27836.69921875 0.54981541644562 -1 0.03285980224609375 8 Unmodified _YIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 56.17704186161178 0.08952674942142515 2 Y{I|L}DKV 5 3 76.81 0 0 7.2972 0 0 0 431.2412203424438 431.2412203424438 73.31546893236258 0 0 0 0 1.1549471895720984 2 0.3807196863200844 0.3494850021680094 + Y{I|L}DKV 7.2972 + + 44 + NaN NaN 124119.7 NaN 8907 2942 11843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11853 55.499 NaN 499440 35 0 46239 0.327 + 18264 MPDVDLHL 8 72 478.23139562648873 954.4482383197775 2 478.23138427734375 MULTI HCD FTMS 0 0 0 11852 196019.484375 0.17811114359499097 -22 0.5669784545898438 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 2 {M(Oxidation (M))|F}PDVD{I|L}{I|L}H 8 2 + 68.313 0 0 7.1574 7.1574 91.77 0 0 0 42.82374100152431 10.380325230808154 10.380325230808154 11.211375162600703 0 1.6989700043360187 0 0 0 {M(Oxidation (M))|F}PDVD{I|L}{I|L}H;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};[YQ][{I|L}T]QSC{I|L} 7.1574;5.9827;3.521;1.1663;0.52546 -;+;-;-;- + 255 + NaN NaN 170979.2 NaN 8908 2943 11852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11854 55.504 NaN 299260 35 0 75302 0.261 -1 EPMDLSTVI 9 46 510.74950396315467 1019.4844549931094 2 510.74945068359375 MULTI HCD FTMS 0 0 0 11852 178572.3125 0.2099924761118204 -7 0.2002410888671875 2 Oxidation (M) _EPM(Oxidation (M))DLSTVI_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 21.74664581756881 0.17247014374749275 2 TV{I|L} 3 -1 44.693 0 0 4.3839 0 0 688.2741566388687 0 688.2741566388687 0 37.70303756120384 0 0 0 1 0 0.8494850021680094 0 TV{I|L} 4.3839 + + 13 NaN NaN 128830.4 NaN 8909 2943 11852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11855 55.507 NaN 298080 35 0 26758 0.261 + 24317 RYGLLTNEI 9 65 539.7980833147832 1077.5816136963663 2 539.7984619140625 MULTI HCD FTMS 0 0 0 11852 64245.75390625 0.4521208199014043 3 -0.07191848754882812 3 Unmodified _RYGLLTNEI_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 13.614867670302875 0.2427269026982664 2 {I|L}TNE{I|L} 5 4 37.805 0 0 3.5083 0 0 489.26793105293126 0 489.26793105293126 0 23.20107520596089 0 0 0 0.6747425010840047 0 0 0 + {I|L}TNE{I|L} 3.5083 + + 97 NaN NaN 134461 NaN 8910 2943 11852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11856 55.511 NaN 302700 35 0 30262 0.261 + 9926 IDFRIGYLK 9 64 562.8269939099326 1123.6394348866652 2 562.8275756835938 MULTI HCD FTMS 0 0 0 11852 76403.4921875 0.700596911488277 -1 0.029506683349609375 4 Unmodified _IDFRIGYLK_ REV__ENSG00000099957|ENST00000413302|P2RX6;REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF;REV__nc|ENSG00000099957|O15547-2|P2RX6 10.799506525563784 0.2670509983294061 2 Y 1 -1 15.797 0 0 1.4059 0 0 259.18980269138314 698.3627263031763 957.5525289945595 0 0 0 0 0 0.8807196863200843 0 0 0 Y 1.4059 + + 64 + NaN NaN 133173.9 NaN 8911 2943 11852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11857 55.514 NaN 124150 35 0 5411.4 0.261 + 27992 TFKELANEF 9 54 549.7761777679614 1097.5378026027226 2 549.7755737304688 MULTI HCD FTMS 0 0 0 11852 21722.576171875 0.49661335413502916 2 -0.042362213134765625 5 Unmodified _TFKELANEF_ ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 28.494509381512117 0.11816142465008336 2 PA{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 5 5 34.208 0 0 3.1168 0 0 521.2971058576187 0 521.2971058576187 0 22.52574989159953 0 0 0 1.3494850021680094 0 0 0 PA{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 3.1168 - 32 NaN NaN 98107.9 NaN 8912 2943 11852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11858 55.517 NaN 180040 35 0 9330.3 0.261 + 18003 MLHSFCSYA 9 61 529.7232676124214 1057.4319822916427 2 530.2964477539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MLHSFCSYA_ REV__ENSG00000141258|ENST00000268989|SGSM2;REV__ENST00000572841.1_1_17:2279931-2282811:+|nuORF;REV__nc|ENSG00000141258|O43147-5|SGSM2;REV__nc|ENSG00000141258|O43147|SGSM2 4.3292370932331545 0.3181982124262546 2 M{I|L} 2 -1 17.959 0 0 1.6983 0 0 0 810.2806490533811 810.2806490533811 13.979400086720375 0 0 0 0 0 0 0 0 M{I|L} 1.6983 + + 8 + NaN NaN 127967.4 NaN 8913 2943 11852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11860 55.522 NaN 433750 35 0 72319 0.327 + 16622 LVVHVEPAL 9 59 488.795021957344 975.575490981488 2 488.7950439453125 MULTI HCD FTMS 0 0 0 11859 248175.046875 0.509340668326714 5 -0.13117218017578125 1 Unmodified _LVVHVEPAL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 42.09456458481378 0.05572955244001856 2 EPA{I|L} 4 5 38.972 0 0 3.9948 0 0 547.3476593871798 0 547.3476593871798 0 23.514647315315642 0 0 0 1.1549471895720984 0 0 0 + EPA{I|L} 3.9948 + + 63 NaN NaN 142355.2 NaN 8914 2944 11859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11861 55.527 NaN 345410 35 0 30596 0.261 + 12736 KYAPSGFYI 9 71 523.2716857989502 1044.5288186647003 2 523.2720947265625 MULTI HCD FTMS 0 0 0 11859 84809.765625 0.7151540400951101 -2 0.05233001708984375 2 Unmodified _KYAPSGFYI_ ENSG00000071127|ENST00000499869|WDR1 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}G[PS]AAAM 8 7 35.226 0 0 3.3725 0 0 294.15767104316564 0 294.15767104316564 0 11.413960427940992 0 0 0 1.3807196863200843 0 0.3494850021680094 0 {M(Oxidation (M))|F}G[PS]AAAM 3.3725 - 149 NaN NaN 150661.8 NaN 8915 2944 11859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11862 55.53 NaN 127770 35 0 11428 0.261 -1 MPDGQFKDISL 11 54 633.8052379415474 1265.5959229498947 2 633.8049926757812 MULTI HCD FTMS 0 0 0 11859 55839.67578125 0.18624869684150444 9 -0.24273681640625 3 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 14.218169984304629 0.3331990305275193 2 S{I|L} 2 -1 30.217 0 0 2.3875 0 0 1047.4701399293008 0 1047.4701399293008 0 19.75895023531386 0 0 0 0.5 0 0.4247425010840047 0 S{I|L} 2.3875 + + 12 NaN NaN 112342.7 NaN 8916 2944 11859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11863 55.533 NaN 203320 35 0 22342 0.262 + 26419 STETHEELL 9 57 529.754684649011 NaN 0 529.7552490234375 PEAK HCD FTMS 0 0 0 11859 20911.294921875 0.4999437792328144 1 -0.01953887939453125 4 Unmodified _STETHEELL_ ENSG00000110717|ENST00000313468|NDUFS8 11.640296217721598 0.23883959125015683 2 M 1 9 6.9061 0 0 0.65307 0 0 113.14741774937234 810.2993868463499 923.4468045957223 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.65307 - 18 + NaN NaN 122282.2 NaN 8917 2944 11859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11864 55.537 NaN 154070 35 0 14412 0.261 + 24964 RYTIQLTTL 9 68 554.8214699485749 1107.6283869639497 2 554.8224487304688 MULTI HCD FTMS 0 0 0 11859 28908.728515625 0.014904244211768414 32 -0.8334274291992188 5 Unmodified _RYTIQLTTL_ ENSG00000162804|ENST00000310397|SNED1;ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;nc|ENSG00000162804|Q8TER0-5|SNED1 5.296884461304476 0.3108627248283497 2 TT{I|L} 3 6 24.425 0 0 2.2051 0 0 774.4384632794937 0 774.4384632794937 0 10.531314311343161 0 0 0 0.4247425010840047 0 0 0 + TT{I|L} 2.2051 + + 29 NaN NaN 108602.7 NaN 8918 2944 11859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11866 55.542 NaN 5718300 35 0 605030 0.327 + 19990 NYIDKVRFL 9 134 584.3292495682689 1166.6439462033377 2 584.329833984375 MULTI HCD FTMS 0 0 0 11865 3418487 0.9209592506647244 2 -0.052448272705078125 1 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 143.90916361153978 1.5265063399744E-05 2 [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L} 9 0 + 107.14 0 0 9.1833 9.1833 92.245 0 0 0 8.023032032677392 8.023032032677392 8.023032032677392 8.023032032677392 0 2.805462187404089 2 0.3252574989159953 2.5228787452803374 + + [YN]{I|L}DKVR{M(Oxidation (M))|F}{I|L};NY{I|L}DKVR{I|L}{M(Oxidation (M))|F};NY{I|L}DKV{I|L}R{M(Oxidation (M))|F};{I|L}YNDKVR{I|L}{M(Oxidation (M))|F};[Y{I|L}]NDKVR{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKVR{M(Oxidation (M))|F}{I|L};{I|L}YNDKV{I|L}R{M(Oxidation (M))|F};[YN]{I|L}[RV]S[VG]{M(Oxidation (M))|F}{I|L};[Y{I|L}]DNKVR{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKV[VG]{M(Oxidation (M))|F}{I|L} 9.1833;8.4956;7.9414;7.121;7.0197;6.7408;6.5668;6.1435;5.9565;5.9515 +;-;-;-;-;-;-;-;-;- + 5677 NaN NaN 675984.5 NaN 8919 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11867 55.546 NaN 2205900 35 0 301860 0.264 + 3312 EEIDGYRRFL 10 85 433.22248030784186 1296.6456115237256 3 433.2226867675781 MULTI HCD FTMS 0 0 0 11865 690643.9375 1 0 0 2 Unmodified _EEIDGYRRFL_ REV__ENSG00000111880|ENST00000369485|RNGTT;REV__nc|ENSG00000111880|O60942-2|RNGTT;REV__nc|ENSG00000111880|O60942-3|RNGTT;REV__nc|ENSG00000111880|O60942-4|RNGTT;REV__RNGTT|p.G235Vfs*7|1|0.13|ENSG00000111880|chr6:88891896-88891896|C/-|frameshift_variant 10.898955630103616 0.4091668631510381 2 {I|L}GD{I|L}[HC] 6 -1 36.911 0 0 2.8467 0 0 640.3440130471083 0 640.3440130471083 0 14.718487496163561 0 0 0 0 0 0.8494850021680094 0 {I|L}GD{I|L}[HC] 2.8467 - 75 NaN NaN 423013 NaN 8920 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11868 55.55 NaN 407820 35 0 71189 0.261 -1 YFIIGCSGSF 10 79 575.7653849242292 1149.5162169152584 2 575.7839965820312 MULTI HCD FTMS 0 0 0 11865 26002.009765625 0.19638743786363977 -3 0.071868896484375 3 Carbamidomethyl (C) _YFIIGC(Carbamidomethyl (C))SGSF_ ENST00000494857.5_3_8:17412137-17415822:+|nuORF 14.838274106304384 0.3723198072575719 2 N{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 29.406 0 0 2.5581 0 0 495.2450428693375 0 495.2450428693375 0 21.70310309343897 0 0 0 0.718765315847925 0 0 0.3494850021680094 N{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5581 - 217 NaN NaN 144986.3 NaN 8921 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11869 55.553 NaN 393440 35 0 52296 0.261 + 24112 RYAQNVAFF 9 57 558.2850543438016 1114.555555754403 2 558.285400390625 MULTI HCD FTMS 0 0 0 11865 136625.40625 0.9655333020765309 -3 0.071868896484375 4 Unmodified _RYAQNVAFF_ ENSG00000169740|ENST00000374433|ZNF32 36.04419817259434 0.08350412372117409 2 VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 41.938 0 0 3.7628 0 0 632.3026698674875 0 632.3026698674875 0 25.48455006504028 0 0 0 1.5 0 0 0 + VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7628 + + 33 + NaN NaN 147509.6 NaN 8922 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11870 55.556 NaN 271320 35 0 12899 0.261 + 29125 TYIESASEL 9 64 506.7455339240153 1011.4765149148307 2 506.7361145019531 MULTI HCD FTMS 0 0 0 11865 29444.32421875 0.4249094232717929 3 -0.08543014526367188 5 Unmodified _TYIESASEL_ ENSG00000158089|ENST00000349752|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14 32.30548876998284 0.10066689432505688 2 [YT]T{NN|[MP]|[D{I|L}]|[EV]}A{[ES]|[DT]|[{I|L}C]}{I|L} 9 2 + 33.692 0 0 3.331 3.331 83.351 0 0 0 8.687033913583953 9.87983705038311 8.687033913583953 7.275071725447404 0 0.8807196863200843 2 0.3054621874040891 0 [YT]T{NN|[MP]|[D{I|L}]|[EV]}A{[ES]|[DT]|[{I|L}C]}{I|L};[YT]T{NN|[MP]|[D{I|L}]|[EV]}[RP]{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}[YT]A{[ES]|[DT]|[{I|L}C]}{I|L};{[QN]|[E{I|L}]|[KN]}S[YT]A{[ES]|[DT]|[{I|L}C]}{I|L} 3.331;2.6117;1.1514;0.67966 -;-;-;- 250 NaN NaN 121505.2 NaN 8923 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11871 55.56 NaN 143400 35 0 16013 0.261 + 31316 VWPKKGTAVFW 11 45 440.24835272688586 1317.7232287808577 3 440.58245849609375 MULTI HCD FTMS 0 0 0 11865 55653.1796875 0.8036047111612683 -6 0.16054916381835938 6 Unmodified _VWPKKGTAVFW_ ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-2|P4HA1;nc|ENSG00000122884|P13674-3|P4HA1 9.764250979337305 0.37200617284565546 2 {M(Oxidation (M))|F}WVW 4 8 33.175 0 0 2.5176 0 0 681.4163685529312 0 681.4163685529312 0 22.690775249321078 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}WVW 2.5176 - 27 NaN NaN 113435.4 NaN 8924 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11872 55.563 NaN 231500 35 0 17240 0.261 + 16963 LYIDYYYLL 9 67 619.8205566230806 1237.6265603129611 2 620.3076782226562 MULTI HCD FTMS 0 0 0 11865 8555.6708984375 0.19805329209475697 -5 0.1243438720703125 7 Unmodified _LYIDYYYLL_ REV__ENSG00000113716|ENST00000502717|HMGXB3 23.1484247019978 0.1603590852062899 2 WYW{I|L}{I|L} 5 -1 26.542 0 0 2.1446 0 0 458.2379322736344 0 458.2379322736344 0 11.057743964882718 0 0 0 0 0 0 0 WYW{I|L}{I|L} 2.1446 - 54 NaN NaN 118960.5 NaN 8925 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11873 55.566 NaN 130500 35 0 10258 0.263 -1 FPSGETIVM 9 48 498.7388134107137 995.4630738882274 2 498.7391662597656 MULTI HCD FTMS 0 0 0 11865 6107.13427734375 0.07491745873188167 14 -0.39484405517578125 8 Oxidation (M) _FPSGETIVM(Oxidation (M))_ ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP 15.847184025352803 0.2234401846867398 2 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.0354 0 0 731.3495384924271 0 731.3495384924271 0 17.74227503252014 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 3.0354 + + 21 NaN NaN 109792.3 NaN 8926 2945 11865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11875 55.571 NaN 2445100 35 0 480020 0.327 + 28030 TFYERGVSW 9 108 572.7747896157396 1143.535026298279 2 572.7749633789062 MULTI HCD FTMS 0 0 0 11874 1251127.125 0.8011318599650461 2 -0.055873870849609375 1 Unmodified _TFYERGVSW_ ENST00000570096.1_1_20:37590616-37590736:-|nuORF 43.85829265575387 0.04763305254408404 2 {[ES]|[DT]|[{I|L}C]}SVYTSVSW 10 6 {[ES]|[DT]|[{I|L}C]} + + 91.298 3.7236 1.7232 7.9838 7.9838 67.394 0 0 0 0 70.85236478732389 0 0 0 3.2059771852360797 0 1.6866654986684733 0 {[ES]|[DT]|[{I|L}C]}SVYTSVSW 7.9838 - 2492 + NaN NaN 465795.8 NaN 8927 2946 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11876 55.576 NaN 824250 35 0 86989 0.261 + -1 EMLDCLLEM 9 84 593.2451923260526 1184.475831718905 2 593.2456665039062 MULTI HCD FTMS 0 0 0 11874 237162 0.45508420592669696 16 -0.4372444152832031 2 Carbamidomethyl (C),2 Oxidation (M) _EM(Oxidation (M))LDC(Carbamidomethyl (C))LLEM(Oxidation (M))_ REV__ENSG00000125998|ENST00000374408|FAM83C 10.823927491677226 0.26684000660059787 2 [{I|L}V]{I|L}DE 5 -1 53.689 0 0 4.5327 0 0 0 612.1493013971311 612.1493013971311 32.33136366066946 0 0 0 0 1.610924374808178 1.6989700043360187 0.28872548999643577 0 [{I|L}V]{I|L}DE 4.5327 - 226 + NaN NaN 221221.5 NaN 8928 2946 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11877 55.579 NaN 387880 35 0 43165 0.261 + 7282 FTIYNNMF 8 78 525.2428652690116 1048.4711776048232 2 525.2540893554688 MULTI HCD FTMS 0 0 0 11874 44708.36328125 0.9222859633064413 -2 0.04909515380859375 3 Unmodified _FTIYNNMF_ ENSG00000101981|ENST00000218099|F9;nc|ENSG00000101981|P00740-2|F9 12.531546534597751 0.5015908124873912 2 SV{I|L} 3 7 28.729 0 0 2.7401 0 0 731.2980475443627 0 731.2980475443627 0 3.5121967796476383 0 0 0 0 0 0.8807196863200843 0 SV{I|L} 2.7401 - 110 NaN NaN 142872.5 NaN 8929 2946 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11878 55.583 NaN 495880 35 0 59422 0.261 + 13053 KYLDEDTIYHL 11 75 470.5696998824829 1408.6872702476487 3 470.5694885253906 MULTI HCD FTMS 0 0 0 11874 148424.671875 0.38169471025863055 -5 0.13428497314453125 4 Unmodified _KYLDEDTIYHL_ ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A 45.602519287354625 0.10086807373802695 2 [Y{I|L}]KDEDT{I|L}YH{I|L} 11 2 + 79.544 0 0 5.6467 5.6467 93.154 0 0 0 25.372845260229234 57.66557676217897 25.372845260229234 79.5442899615247 0 1.774227503252014 2 1.1549471895720984 0.2742275032520141 [Y{I|L}]KDEDT{I|L}YH{I|L} 5.6467 - 381 NaN NaN 178078 NaN 8930 2946 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11879 55.586 NaN 177160 35 0 8980.7 0.261 + 29709 VDDPKHFTF 9 61 553.2689619124332 1104.5233708916662 2 553.2680053710938 MULTI HCD FTMS 0 0 0 11874 28060.642578125 0.8788823825455423 -1 0.0295562744140625 5 Unmodified _VDDPKHFTF_ REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant;REV__ENSG00000172404|ENST00000307221|DNAJB7 10.073929032068715 0.27331982688540024 2 T{I|L}Y{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 7 -1 50.566 0 0 4.578 0 0 165.08254109620003 0 165.08254109620003 0 28.873453591370684 0 0 0 0.8494850021680094 0 0 0 T{I|L}Y{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4.578 - 166 + NaN NaN 113491.5 NaN 8931 2946 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11880 55.589 NaN 106110 35 0 11795 0.262 + -1 ELMLLLAVYMM 11 40 458.894219675131 1373.6608296255931 3 459.2288513183594 MULTI HCD FTMS 0 0 0 11874 7191.490234375 0.32066213082809897 -1 0.0295562744140625 6 3 Oxidation (M) _ELM(Oxidation (M))LLLAVYM(Oxidation (M))M(Oxidation (M))_ REV__ENST00000505992.1_1_4:99806121-99806199:-|nuORF 2.843284757254958 0.4064509854383032 2 {I|L} 1 -1 8.9794 0 0 0.65368 0 0 615.3378514293481 642.2183282627221 1257.5561796920701 0 0 0 0 0 0.5 0 0 0 {I|L} 0.65368 + + 3 + NaN NaN 110238.4 NaN 8932 2946 11874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11882 55.594 NaN 858630 35 0 132290 0.327 + -1 FMEWCYLL 8 74 581.2590439917547 1160.5035350503092 2 581.7801513671875 MULTI HCD FTMS 0 0 0 11881 24634.359375 0.4205283641106847 6 -0.17074966430664062 1 Carbamidomethyl (C) _FMEWC(Carbamidomethyl (C))YLL_ REV__ENST00000578529.5_1_18:259269-260310:-|nuORF;REV__ENST00000581116.1_1_18:259269-264031:-|nuORF 14.581692164780916 0.48650662947107914 2 {M(Oxidation (M))|F}S[W{I|L}]YVSW 8 -1 41.107 0 0 3.5422 0 0 73.96997949916552 0 73.96997949916552 0 17.390690719683093 0 0 0 0 0 0.7742275032520141 0 {M(Oxidation (M))|F}S[W{I|L}]YVSW 3.5422 - 562 + NaN NaN 235469.4 NaN 8933 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11883 55.599 NaN 1806300 35 0 455910 0.264 + 31518 VYGFQWRHF 9 82 413.8733934200116 1238.5983508602349 3 413.87335205078125 MULTI HCD FTMS 0 0 0 11881 434592.96875 0.8146530615592255 -2 0.052448272705078125 2 Unmodified _VYGFQWRHF_ ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS 37.97399986684836 0.07464525285885698 2 VYG{M(Oxidation (M))|F}QW[RH]{M(Oxidation (M))|F} 9 0 + 66.27 0 0 5.3504 5.3504 87.462 0 0 0 48.17078135898015 6.795606106491903 6.795606106491903 9.208187539523749 0 1.1989700043360187 2 0 0 + + VYG{M(Oxidation (M))|F}QW[RH]{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}[AG]W[RH]{M(Oxidation (M))|F} 5.3504;4.6069 +;- + 476 + NaN NaN 360980.3 NaN 8934 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11884 55.602 NaN 507120 35 0 47666 0.261 + 1765 CLLSPWQGSW 10 92 588.7813732237325 1175.548193514265 2 588.7695922851562 MULTI HCD FTMS 0 0 0 11881 9008.1533203125 0.07360580526747389 8 -0.22306060791015625 3 Unmodified _CLLSPWQGSW_ REV__ENST00000264039.6_1_2:241407346-241407475:+|nuORF 30.636539890814138 0.2266618088935899 2 SVS{[YC]|[HE]}{I|L}DW 8 -1 40.61 0 0 3.4546 0 0 204.11341796493554 0 204.11341796493554 0 27.907008096179894 0 0 0 0 0 0.8494850021680094 0 SVS{[YC]|[HE]}{I|L}DW 3.4546 - 909 + NaN NaN 166929.3 NaN 8935 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11885 55.606 NaN 1013800 35 0 362850 0.264 + 8412 GYQRRWFVL 9 68 408.8926902910397 1223.6562414733191 3 408.8926086425781 MULTI HCD FTMS 0 0 0 11881 306596.09375 0.9563072027872375 -3 0.07198715209960938 4 Unmodified _GYQRRWFVL_ ENSG00000110048|ENST00000263847|OSBP;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2 21.536976647645854 0.1742816388551942 2 V{I|L} 2 7 28.271 0 0 2.3104 0 0 993.4925986352177 0 993.4925986352177 0 12.786596949921218 0 0 0 0.8807196863200843 0 0 0 + V{I|L} 2.3104 + + 40 NaN NaN 236148.3 NaN 8936 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11886 55.609 NaN 1886500 35 0 142490 0.261 -1 VMEEQLQQI 9 108 567.2793801417863 1132.5442073503725 2 567.2957153320312 MULTI HCD FTMS 0 0 0 11881 43668.0859375 0.1062117447775201 15 -0.4143524169921875 5 Oxidation (M) _VM(Oxidation (M))EEQLQQI_ CON__Q7Z3Y9;ENSG00000186393|ENST00000335552|KRT26 16.942295170755138 0.21397866736869717 2 QQ{I|L}Q{I|L}M[Q{I|L}] 8 -1 42.74 0 0 3.7738 0 0 132.0028246041474 0 132.0028246041474 0 15.560931587959672 0 0 0 0 0 0 1.4604093769761874 QQ{I|L}Q{I|L}M[Q{I|L}] 3.7738 - 1936 + NaN NaN 383853.9 NaN 8937 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11887 55.612 NaN 493960 35 0 83292 0.261 + 5724 FPAGYMYPSM 10 68 598.2430853481478 1194.4716177630955 2 598.2434692382812 MULTI HCD FTMS 0 0 0 11881 214659.0625 0.9463648644087295 9 -0.25262451171875 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 74.42276476219924 0.012344753082416305 2 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 5 + 58.112 0 0 4.8651 4.8651 83.182 0 0 0 2.498774732165998 8.071968632008435 2.498774732165998 2.498774732165998 0 1.8494850021680094 1.0457574905606752 0.3807196863200844 0 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[PS]{[QC]|[C(Carbamidomethyl (C))A]}P{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PY[W{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}Y[W{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F} 4.8651;4.6559;4.1893;3.8528;3.8064;3.7873;3.6863;1.9901;0.36694;0.30065 -;-;-;-;-;-;-;-;-;- 427 NaN NaN 153295 NaN 8938 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11888 55.616 NaN 489510 35 0 39004 0.264 + 22584 QTEDQFSTLF 10 83 405.8561086707208 1214.5464966123625 3 405.85601806640625 MULTI HCD FTMS 0 0 0 11881 214566.140625 0.9940207754924326 -1 0.022891998291015625 7 Unmodified _QTEDQFSTLF_ REV__ENST00000390382.3_1_7:142157380-142157551:-|nuORF 10.073929032068715 0.4168838835836452 2 KD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 -1 22.218 0 0 1.8294 0 0 583.2124956320141 0 583.2124956320141 0 1.9762124636434208 0 0 0 0 0 0 0 KD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.8294 - 399 NaN NaN 167857.3 NaN 8939 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11889 55.619 NaN 97744 35 0 12020 0.261 + 14385 LEFNSKIL 8 46 482.2792607038513 962.5439684745027 2 482.2791748046875 MULTI HCD FTMS 0 0 0 11881 41222.6484375 0.36099218856952037 3 -0.0854644775390625 8 Unmodified _LEFNSKIL_ ENST00000468445.1_1_7:95216267-95216813:-|nuORF 10.073929032068715 0.5196730168178844 2 {I|L}{I|L} 2 6 25.969 0 0 2.698 0 0 718.3628740417159 0 718.3628740417159 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.698 + + 6 NaN NaN 101611.3 NaN 8940 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11890 55.622 NaN 259330 35 0 35199 0.261 + 18487 MRAAFTAFEE 10 73 586.7740501260754 NaN 0 586.7908935546875 PEAK HCD FTMS 0 0 0 11881 19877.146484375 0.4365870081515754 8 -0.22306060791015625 9 Unmodified _MRAAFTAFEE_ ENSG00000007080|ENST00000445755|CCDC124 8.745405648335112 0.33269943387702366 2 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 6 6 36.063 0 0 3.0783 0 0 113.05148880888039 284.17182336978755 397.2233121786679 0 0 0 0 0 0 0 0.5 0.3807196863200844 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.0783 - 111 + NaN NaN 132034.3 NaN 8941 2947 11881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11892 55.627 NaN 947300 35 0 153830 0.327 + 30436 VLPKLYVKL 9 77 536.8600722324053 1071.7055915316105 2 536.8602905273438 MULTI HCD FTMS 0 0 0 11891 337434.96875 0.4377470605700857 3 -0.08204269409179688 1 Unmodified _VLPKLYVKL_ ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11 56.17704186161178 0.022929533404884107 2 {I|L}VPK{I|L}YVK{I|L} 9 2 + 66.04 0 0 6.1622 6.1622 86.647 0 0 0 56.34774779719116 8.569233304795034 8.569233304795034 6.020599913279625 0 1.5044321917401078 2 0 0.2614393726401688 {I|L}VPK{I|L}YVK{I|L};V{I|L}PK{I|L}YVK{I|L} 6.1622;5.6004 -;+ + 102 + NaN NaN 242159.4 NaN 8942 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11893 55.632 NaN 2557100 35 0 252290 0.261 + 24088 RYALQLQQI 9 112 566.8271974242555 1131.6398419153109 2 566.8275756835938 MULTI HCD FTMS 0 0 0 11891 928057.3125 0.17101079982597778 -5 0.1277923583984375 2 Unmodified _RYALQLQQI_ CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13 111.28704002717404 0.0027322905094575235 2 [YR]A{I|L}Q{I|L}QQ{I|L} 9 0 + 78.923 0 0 6.9742 6.9742 90.226 0 0 0 4.762036441594191 32.18642789064525 4.762036441594191 9.208187539523749 0 1.9604093769761874 0 0 1.1237125054200234 + + [YR]A{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}Q[AG]{I|L};[YR]A{I|L}Q{I|L}[AG]Q{I|L};[YR]A{I|L}[AG]{I|L}QQ{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}Q{I|L}Q;[YR]A{I|L}QQ{I|L}Q{I|L};[YR]A{I|L}QAG{I|L}Q{I|L};[YR]A{I|L}[AG]{I|L}[AG]Q{I|L};[YR]A{I|L}Q{I|L}[AG][AG]{I|L} 6.9742;6.1605;6.1605;6.1605;6.0466;5.9813;5.669;5.5585;5.3507;5.3507 +;-;-;-;-;-;-;-;-;- + 4251 NaN NaN 476582.6 NaN 8943 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11894 55.635 NaN 542640 35 0 36547 0.261 + 34192 YPDIPKEEAF 10 83 604.7957043869296 1207.5768558406592 2 605.319091796875 MULTI HCD FTMS 0 0 0 11891 49257.01171875 0.6269082856548822 -2 0.055873870849609375 3 Unmodified _YPDIPKEEAF_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 21.590151480376914 0.30916502439568466 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[DC]{I|L}Q{I|L}E 10 6 + 58.901 0 0 4.8776 4.8776 85.969 0 0 0 13.010299956639813 13.010299956639813 13.010299956639813 9.164539485499255 0 1 1.3010299956639813 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[DC]{I|L}Q{I|L}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[DC]{I|L}[AG]{I|L}E;YPD{I|L}{M(Oxidation (M))|F}{[CP]|[EA]}Q{I|L}{I|L};Y[KP]{I|L}[DC]{I|L}D{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RR{M(Oxidation (M))|F}[WH]{M(Oxidation (M))|F};Y[DP]{I|L}{M(Oxidation (M))|F}RR{[QN]|[E{I|L}]|[KN]};[DP]{I|L}H{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[HD]A{M(Oxidation (M))|F};[DP]{I|L}H{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WH]{M(Oxidation (M))|F};[HV][HK][DC]{I|L}D{[QN]|[E{I|L}]|[KN]};[DP]{I|L}H{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[MN][QP] 4.8776;4.1187;3.2746;1.8122;1.6243;1.6009;1.388;1.0031;0.99716;0.90389 -;-;-;-;-;-;-;-;-;- 399 NaN NaN 177953.3 NaN 8944 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11895 55.638 NaN 738190 35 0 56351 0.261 + 28398 TPFHEIMSL 9 97 545.7655737961937 1089.5165946591874 2 545.7657470703125 MULTI HCD FTMS 0 0 0 11891 258309.359375 0.7286095279767512 9 -0.242584228515625 4 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 103.74828524460852 0.00396301343438984 2 E{I|L}{M(Oxidation (M))|F}S{I|L} 5 4 51.56 0 0 4.7323 0 0 482.22798354316564 0 482.22798354316564 0 31.082268588648247 0 0 0 1.372363747448347 0 1.1549471895720984 0 + E{I|L}{M(Oxidation (M))|F}S{I|L} 4.7323 + + 2561 NaN NaN 202865.2 NaN 8945 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11896 55.642 NaN 438190 35 0 57148 0.261 -1 VMAPRTLLL 9 51 515.3098989499737 1028.6052449667473 2 515.3099975585938 MULTI HCD FTMS 0 0 0 11891 198312.4375 0.5367577689071842 -6 0.15729904174804688 5 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 24.990960013464015 0.14443998892849796 2 AD{I|L} 3 -1 33.188 0 0 3.2265 0 0 711.4650772515993 0 711.4650772515993 0 16.197887582883936 0 0 0 1 0 0 0 AD{I|L} 3.2265 - 40 NaN NaN 148425.8 NaN 8946 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11897 55.645 NaN 321750 35 0 32274 0.261 + 18305 MPEPKFMY 8 57 521.7404653986475 1041.466377864095 2 521.7406616210938 MULTI HCD FTMS 0 0 0 11891 90859.2109375 0.7465039896955304 -1 0.03298187255859375 6 Unmodified _MPEPKFMY_ ENSG00000035681|ENST00000038176|NSMAF;ENST00000519858.1_1_8:59513803-59535956:-|nuORF;nc|ENSG00000035681|Q92636-2|NSMAF 10.823927491677226 0.514154816617796 2 MPET 4 5 36.67 0 0 3.521 0 0 0 580.2614840143186 580.2614840143186 32.06608156627958 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 MPET 3.521 - 7 + NaN NaN 139794.3 NaN 8947 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11898 55.648 NaN 195810 35 0 19726 0.261 + 20563 PEEKPPRYIA 10 54 600.3244582378845 1198.634363542569 2 600.324951171875 MULTI HCD FTMS 0 0 0 11891 26597.0234375 0.5637140807934342 5 -0.13776779174804688 7 Unmodified _PEEKPPRYIA_ ENSG00000071909|ENST00000408978|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;ENST00000602629.1_1_2:171225816-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-6|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B 3.944395688203298 0.4544253912184634 2 Y[{I|L}A] 3 7 8.072 0 0 0.67343 0 0 833.4395831244034 0 833.4395831244034 0 -0.8804562952784067 -0.8804562952784067 0 0 0 0 0 0 + Y[{I|L}A] 0.67343 + + 30 + NaN NaN 111817.4 NaN 8948 2948 11891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11900 55.653 NaN 1007700 35 0 301760 0.327 + 18324 MPETTETVL 9 56 510.74950396315467 1019.4844549931094 2 510.74969482421875 MULTI HCD FTMS 0 0 0 11899 747898.8125 0.8794931382095704 -1 0.026203155517578125 1 Unmodified _MPETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 37.97399986684836 0.07464525285885698 2 TETV{I|L} 5 4 57.959 0 0 5.6851 0 0 458.18284804511876 0 458.18284804511876 0 50.96910013008056 0 0 0 1.5 0 0.8494850021680094 0 + TETV{I|L} 5.6851 + + 36 NaN NaN 235919.1 NaN 8949 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11901 55.658 NaN 832200 35 0 76128 0.261 + 18265 MPDVDLHL 8 81 478.23139562648873 954.4482383197775 2 478.2312927246094 MULTI HCD FTMS 0 0 0 11899 399897.21875 0.3633626074424203 -16 0.4162559509277344 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 72.49 0 0 7.5949 7.5949 88.176 0 0 0 3.394192071636951 3.394192071636951 3.394192071636951 3.394192071636951 0 2.3807196863200843 0 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[CA]|SS}[YK]N{I|L};{I|L}[YE]QQK{M(Oxidation (M))|F};[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L} 7.5949;7.2393;3.8609;1.1663;0.70599;0.46664;0.28367 +;+;-;-;-;-;- + 552 NaN NaN 206272.4 NaN 8950 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11902 55.661 NaN 635240 35 0 195010 0.261 + 29347 TYPENWRAF 9 74 592.2803518491406 1182.5461507650812 2 592.2802734375 MULTI HCD FTMS 0 0 0 11899 232833.59375 0.6691734597336877 -5 0.13117218017578125 3 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 19.361941925380144 0.1930734562688509 2 [YT]K{[WN]|[YH]}P{M(Oxidation (M))|F}NN 9 6 + 49.359 0 0 4.1739 4.1739 85.792 0 0 0 12.663800089887545 26.689615513722202 12.663800089887545 9.208187539523749 0 0.8494850021680094 2 0.5 0 [YT]K{[WN]|[YH]}P{M(Oxidation (M))|F}NN;[YT]K{[WN]|[YH]}P{M(Oxidation (M))|F}GGN;[YT]K{[WN]|[YH]}[HS]T{M(Oxidation (M))|F};[YT]EP{[WN]|[YH]}RA{M(Oxidation (M))|F};[YT][R{I|L}]QQ{M(Oxidation (M))|F}NN;[YT]K[C(Carbamidomethyl (C))D][RN]{I|L}N;[EP]NT[WY]RA{M(Oxidation (M))|F};[EP]GGT[WY]RA{M(Oxidation (M))|F} 4.1739;3.3952;2.9932;2.5365;2.4022;1.5758;1.5678;0.7891 -;-;-;-;-;-;-;- 680 NaN NaN 205159.9 NaN 8951 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11903 55.665 NaN 414400 35 0 19635 0.261 + 851 AWKDFEYAW 9 92 608.2797028236537 1214.5448527141073 2 608.2803344726562 MULTI HCD FTMS 0 0 0 11899 98277.984375 0.689933178464331 2 -0.05583953857421875 4 Unmodified _AWKDFEYAW_ REV__ENSG00000127616|ENST00000344626|SMARCA4;REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF;REV__nc|ENSG00000127616|P51532-2|SMARCA4;REV__nc|ENSG00000127616|P51532-3|SMARCA4;REV__nc|ENSG00000127616|P51532-4|SMARCA4;REV__nc|ENSG00000127616|P51532-5|SMARCA4 12.531546534597751 0.2520865569484384 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}[EP]DPWS 10 -1 + 29.843 0 0 2.4571 2.4571 81.061 0 0 0 2.724928274552589 5.855931671512877 2.724928274552589 2.724928274552589 0 0 1.5228787452803376 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}[EP]DPWS;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{[WS]|[C(Carbamidomethyl (C)){I|L}]}DPWS;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}[EP]D{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[Y{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[Y{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}M{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Y{M(Oxidation (M))|F}]PWS;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[WQ]WHH{M(Oxidation (M))|F};[YT]{[TV]|[{I|L}S]}[C(Carbamidomethyl (C))S]D{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[Y{M(Oxidation (M))|F}]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.4571;2.2328;1.975;1.5532;1.3894;1.3438;1.2219;1.0387;1.0089;0.86166 -;-;-;-;-;-;-;-;-;- 282 NaN NaN 157308.3 NaN 8952 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11904 55.668 NaN 468390 35 0 51933 0.261 -1 PSPSMLCSVL 10 58 525.2539350767738 1048.4933172203475 2 525.7681884765625 MULTI HCD FTMS 0 0 0 11899 43188.3515625 0.5916494310784278 4 -0.11156463623046875 5 Oxidation (M) _PSPSM(Oxidation (M))LCSVL_ ENST00000561992.5_1_18:53089461-53089578:-|nuORF 19.256988751693697 0.33098864134661865 2 SV{I|L} 3 -1 27.792 0 0 2.6506 0 0 731.3013172834 0 731.3013172834 0 10.80198135264581 0 0 0 0.8494850021680094 0 0.8494850021680094 0 SV{I|L} 2.6506 + + 80 NaN NaN 156748.7 NaN 8953 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11905 55.671 NaN 180380 35 0 23675 0.261 + -1 NNNGTGLDIM 10 56 532.7381408646033 1063.4617287960066 2 532.7388916015625 MULTI HCD FTMS 0 0 0 11899 40060.26171875 0.23796154961348578 8 -0.21638107299804688 6 Oxidation (M) _NNNGTGLDIM(Oxidation (M))_ REV__ENSG00000141759|ENST00000269601|TXNL4A;REV__ENST00000355491.5_1_18:77733687-77736734:-|nuORF;REV__ENST00000586612.1_1_18:77733687-77746603:-|nuORF 10.823927491677226 0.4098686510432541 2 {M(Oxidation (M))|F}GE{I|L} 4 -1 27.652 0 0 2.6001 0 0 599.235643455275 0 599.235643455275 0 5.740312677277188 0 0 0 0.2614393726401688 0 0 0 {M(Oxidation (M))|F}GE{I|L} 2.6001 - 106 NaN NaN 117297.4 NaN 8954 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11906 55.675 NaN 239650 35 0 22050 0.262 -1 VYMLYNLQPD 10 73 424.5365826742243 1270.5879186228728 3 424.5362854003906 MULTI HCD FTMS 0 0 0 11899 65445.640625 0.8008416203821345 1 -0.026279449462890625 7 Oxidation (M) _VYM(Oxidation (M))LYNLQPD_ ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF 14.957161354070239 0.3712077760547347 2 VY 2 -1 39.068 0 0 3.0748 0 0 0 1005.43236387151 1005.43236387151 22.870156338638594 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 VY 3.0748 + + 13 + NaN NaN 130812.4 NaN 8955 2949 11899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11908 55.68 NaN 1471400 35 0 136360 0.327 + 19991 NYIDKVRFL 9 116 584.3292495682689 1166.6439462033377 2 584.3298950195312 MULTI HCD FTMS 0 0 0 11907 669714 0.18042464505486647 7 -0.19010162353515625 1 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 125.52916310638031 0.0008761121089336018 2 [YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F} 9 2 + 92.731 0 0 7.9485 7.9485 93.758 0 0 0 63.50711233356286 14.09256854528806 14.09256854528806 13.02513783473323 0 2.079689690656103 2 0.6861818737241735 0 [YN]{I|L}DKVR{I|L}{M(Oxidation (M))|F};{I|L}YNDKVR{I|L}{M(Oxidation (M))|F};[YN]{I|L}[RV]S[VG]{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}DKVR{I|L}{M(Oxidation (M))|F};[YN]R[{I|L}V]S[VG]{M(Oxidation (M))|F}{I|L};[SG]V{M(Oxidation (M))|F}DKVR{I|L}{M(Oxidation (M))|F};[YN]{I|L}[RV]{I|L}[YN]{I|L};[Y{I|L}]N[RV]S[VG]{M(Oxidation (M))|F}{I|L};[YN]{I|L}[RV]{I|L}{I|L}[YN];[YN]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VV{M(Oxidation (M))|F}{I|L} 7.9485;6.832;5.7995;4.7156;4.5115;4.5014;3.7516;3.6627;3.0951;3.0431 -;-;-;-;-;-;-;-;-;- 1921 + NaN NaN 308827.9 NaN 8956 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11909 55.684 NaN 408230 35 0 52179 0.261 + 7666 FYKDPQGEI 9 62 548.771287112362 NaN 0 548.7608032226562 PEAK HCD FTMS 0 0 0 11907 6098.58251953125 0.5043985613416708 1 -0.029560089111328125 2 Unmodified _FYKDPQGEI_ ENSG00000146830|ENST00000678049|GIGYF1 7.910154910731844 0.25691533546754686 2 Y{M(Oxidation (M))|F}YRT 5 8 23.716 0 0 2.1648 0 0 131.11755642561872 231.0436953180297 362.16125174364845 0 0 0 0 0 0 0 0.805462187404089 0 Y{M(Oxidation (M))|F}YRT 2.1648 - 114 + NaN NaN 148157.3 NaN 8957 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11910 55.688 NaN 696430 35 0 103520 0.261 + 2287 DLQRPLQSF 9 76 552.2958657390776 1102.5771785449551 2 552.2798461914062 MULTI HCD FTMS 0 0 0 11907 16189.150390625 0.4337644160419118 1 -0.029560089111328125 3 Unmodified _DLQRPLQSF_ ENSG00000048991|ENST00000683871|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1 15.847184025352803 0.2234401846867398 2 [Y{I|L}]EQG{M(Oxidation (M))|F}VTT 9 8 57.96 0 0 5.2568 0 0 0 61.030957592410836 61.030957592410836 7.025166531265725 0 0 0 0 0 1.3979400086720375 0.3252574989159953 1.5356668758921828 [Y{I|L}]EQG{M(Oxidation (M))|F}VTT 5.2568 - 1307 NaN NaN 197831.3 NaN 8958 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11911 55.691 NaN 504840 35 0 134300 0.263 + 4930 FAMIDSEEWF 10 64 425.51806566703794 1273.5323676013138 3 425.5178527832031 MULTI HCD FTMS 0 0 0 11907 159964.6875 0.6989175923281776 -2 0.05248260498046875 4 Unmodified _FAMIDSEEWF_ REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant 15.847184025352803 0.36288280428275715 2 {[YD]|[{M(Oxidation (M))|F}M]}[QA]T[QA]DYS{I|L} 11 -1 + 56.743 0 0 4.4556 4.4556 89.058 0 0 0 8.255760304034148 38.516607362355835 8.255760304034148 20.184917831265842 0 1.579689690656103 1.3010299956639813 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}[QA]T[QA]DYS{I|L};{M(Oxidation (M))|F}AYD[QA]T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[CP]|[EA]} 4.4556;2.8706 -;- 188 NaN NaN 165508.6 NaN 8959 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11912 55.694 NaN 291140 35 0 41332 0.261 + 17759 MEEKMQISGSN 11 57 418.52203097831296 NaN 0 418.53314208984375 PEAK HCD FTMS 0 0 0 11907 6912.75537109375 0.278549063418097 -5 0.13791275024414062 5 Unmodified _MEEKMQISGSN_ ENST00000603162.1_1_10:111440451-111440523:+|nuORF 4.11662792887243 0.330442455561113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 126640.2 NaN 8960 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11913 55.698 NaN 252920 35 0 32810 0.261 + -1 WTDPSECII 9 52 560.752914032985 1119.49127513277 2 560.7532958984375 MULTI HCD FTMS 0 0 0 11907 58586.30859375 0.6762490553855199 -1 0.026279449462890625 6 Carbamidomethyl (C) _WTDPSEC(Carbamidomethyl (C))II_ REV__ENSG00000144771|ENST00000273286|LRTM1;REV__LRTM1|p.D206E|1|0.31|ENSG00000144771|chr3:54918879-54918879|G/C|missense_variant;REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 25.969 0 0 2.3197 0 0 875.3107883404863 0 875.3107883404863 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.3197 + + 3 NaN NaN 115927.4 NaN 8961 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11914 55.701 NaN 361000 35 0 53966 0.261 -1 RYMVHLLEL 9 66 595.3233785573217 1188.6322041814433 2 595.3236694335938 MULTI HCD FTMS 0 0 0 11907 90232.796875 0.6146588099656721 -3 0.0854644775390625 7 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ ENSG00000137814|ENST00000260372|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 29.081581746732265 0.1154664336125038 2 {[QN]|[E{I|L}]|[KN]}[WH]H{I|L}{I|L}E{I|L} 9 -1 + 54.715 0 0 4.6032 4.6032 91.064 0 0 0 13.679359654502399 32.03865411098249 13.679359654502399 54.7147165127528 0 0.7302046884880937 1.3979400086720375 0 0 {[QN]|[E{I|L}]|[KN]}[WH]H{I|L}{I|L}E{I|L} 4.6032 - 71 NaN NaN 143972.5 NaN 8962 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11915 55.704 NaN 204360 35 0 41391 0.262 + 8742 HHHHHHHYHF 10 56 475.8774206442255 1424.6104325328765 3 475.8772277832031 MULTI HCD FTMS 0 0 0 11907 43674.01953125 0.45057397807545363 5 -0.13759613037109375 8 Unmodified _HHHHHHHYHF_ ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H 2.0860074813731053 0.46426213543441425 2 AH{M(Oxidation (M))|F} 3 8 25.177 0 0 1.7673 0 0 1051.435000259242 0 1051.435000259242 0 21.197887582883936 0 0 0 0.5 0 0 0 AH{M(Oxidation (M))|F} 1.7673 - 20 + NaN NaN 110029.2 NaN 8963 2950 11907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11917 55.709 NaN 737870 35 0 123590 0.327 -1 CRRHGVSSW 9 79 572.7747896157396 1143.535026298279 2 572.7745971679688 MULTI HCD FTMS 0 0 0 11916 259954.71875 0.16645631221437865 7 -0.18680572509765625 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))RRHGVSSW_ ENST00000373580.7_1_9:127573745-127573916:+|nuORF 30.636539890814138 0.10832830463492794 2 ASVSW 5 -1 61.938 0 0 5.4164 0 0 595.2757012023791 0 595.2757012023791 0 41.74865027867405 0 0 0 2 0 0.6989700043360187 0 ASVSW 5.4164 - 365 + NaN NaN 208189 NaN 8964 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11918 55.714 NaN 616250 35 0 97732 0.261 -1 FYGDKMNLF 9 68 575.7653849242292 1149.5162169152584 2 575.78369140625 MULTI HCD FTMS 0 0 0 11916 111957.3046875 0.8455887993228933 3 -0.081878662109375 2 Oxidation (M) _FYGDKM(Oxidation (M))NLF_ ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6 34.40172386719151 0.0910440009062557 2 [Y{M(Oxidation (M))|F}]RQK{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 8 -1 + 36.164 0 0 3.146 3.146 85.546 0 0 0 4.6040937697618745 18.303658916343366 4.6040937697618745 9.262137858390812 0 0.7742275032520141 0 0 0.3807196863200844 [Y{M(Oxidation (M))|F}]RQK{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]R[AG]K{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[EP]VV[MN]W;[Y{M(Oxidation (M))|F}][KG]N{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{[ET]|[MV]}N[YK]W;[Y{M(Oxidation (M))|F}][KG]N{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[YT]N[YK]W;{[CT]|[{M(Oxidation (M))|F}G]}[YK]N{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[MN]V[YK]YE;{[CT]|[{M(Oxidation (M))|F}G]}[YK]N{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F} 3.146;2.3403;1.8993;1.772;1.6435;1.3569;1.2912;1.2095;1.1442;0.79445 -;-;-;-;-;-;-;-;-;- 389 NaN NaN 183372.9 NaN 8965 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11919 55.717 NaN 281440 35 0 19868 0.261 + 24113 RYAQNVAFF 9 57 558.2850543438016 1114.555555754403 2 558.284912109375 MULTI HCD FTMS 0 0 0 11916 57663.75390625 0.4075104056221609 3 -0.081878662109375 3 Unmodified _RYAQNVAFF_ ENSG00000169740|ENST00000374433|ZNF32 28.486842064014134 0.11819662193267319 2 E{I|L}[{M(Oxidation (M))|F}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 6 48.474 0 0 4.3492 0 0 241.14261061836095 0 241.14261061836095 0 16.267507096020992 0 0 0 1.3494850021680094 0 0.3252574989159953 0 E{I|L}[{M(Oxidation (M))|F}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.3492 - 126 NaN NaN 121710.9 NaN 8966 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11920 55.72 NaN 222970 35 0 24684 0.261 + -1 YVYPHICCQ 9 61 620.2680800706427 1238.5216072080852 2 620.2684326171875 MULTI HCD FTMS 0 0 0 11916 58380.578125 0.8345895841065188 2 -0.05572509765625 4 2 Carbamidomethyl (C) _YVYPHIC(Carbamidomethyl (C))C(Carbamidomethyl (C))Q_ REV__ENSG00000165370|ENST00000651716|GPR101 2.302733041254933 0.33356062215410776 2 [MT][KQ]R[WY]{I|L} 8 -1 21.872 0 0 1.766 0 0 0 128.96786740569738 128.96786740569738 6.387437564371012 0 0 0 0 0 1.6989700043360187 0.4247425010840047 0 [MT][KQ]R[WY]{I|L} 1.766 - 60 NaN NaN 117066.5 NaN 8967 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11921 55.724 NaN 208210 35 0 16129 0.261 + 31659 VYKAFVMETF 10 64 625.8096579261396 1249.6047629190791 2 625.8101196289062 MULTI HCD FTMS 0 0 0 11916 83211.78125 0.5031271413154599 -3 0.08204269409179688 5 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 96.93554129104106 0.00047009049263694176 2 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 109.36 0 0 8.7515 8.7515 95.966 0 0 0 6.537209583838219 6.537209583838219 6.537209583838219 20.228787452803374 0 3.1747425010840047 2 0.4247425010840047 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YK]VA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[K{I|L}]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[K{I|L}]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]TV{[YC]|[HE]}[K{I|L}]T{M(Oxidation (M))|F} 8.7515;7.1327;3.1067;0.90608;0.72855 +;-;-;-;- + 282 NaN NaN 122418.9 NaN 8968 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11922 55.727 NaN 228520 35 0 27248 0.264 + 31317 VWPKKGTAVFW 11 52 440.24835272688586 1317.7232287808577 3 440.2480163574219 MULTI HCD FTMS 0 0 0 11916 63827.1484375 0.5325285055398478 -12 0.3280220031738281 6 Unmodified _VWPKKGTAVFW_ ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-2|P4HA1;nc|ENSG00000122884|P13674-3|P4HA1 12.855947597645695 0.34506811884481176 2 {M(Oxidation (M))|F}WVW 4 8 33.175 0 0 2.5176 0 0 681.4157582013687 0 681.4157582013687 0 22.690775249321078 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}WVW 2.5176 - 24 NaN NaN 120849.7 NaN 8969 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11923 55.731 NaN 574400 35 0 85675 0.261 + 16031 LPSDTRLVL 9 74 507.30315752088137 1012.5917621085628 2 507.30316162109375 MULTI HCD FTMS 0 0 0 11916 166999.5 0.3296669903096492 -4 0.11502456665039062 7 Unmodified _LPSDTRLVL_ ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1 53.40400417844725 0.026808823219830042 2 {I|L}PSD 4 5 65.222 0 0 6.4411 0 0 0 597.372222352546 597.372222352546 44.41962823435958 0 0 0 0 1 1.5228787452803376 0.805462187404089 0 + {I|L}PSD 6.4411 + + 111 + NaN NaN 166321.8 NaN 8970 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11924 55.734 NaN 128200 35 0 11378 0.261 + 16610 LVSFERLL 8 38 488.795021957344 975.575490981488 2 488.79498291015625 MULTI HCD FTMS 0 0 0 11916 21551.703125 0.04423151727576935 12 -0.33875274658203125 8 Unmodified _LVSFERLL_ REV__ENSG00000074755|ENST00000381638|ZZEF1;REV__ENST00000574474.1_1_17:3979912-4046255:-|nuORF;REV__nc|ENSG00000074755|O43149-3|ZZEF1 6.723162845929126 0.5320176132289695 2 W 1 -1 1.5938 0 0 0.16337 0 0 553.3344459148849 233.1407412164672 786.4751871313521 0 0 0 0 0 0 0 0 0 W 0.16337 - 4 + NaN NaN 97101.8 NaN 8971 2951 11916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11926 55.739 NaN 699810 35 0 92820 0.327 + 13054 KYLDEDTIYHL 11 73 470.5696998824829 1408.6872702476487 3 470.5697937011719 MULTI HCD FTMS 0 0 0 11925 211612.484375 0.5441909683226283 1 -0.026172637939453125 1 Unmodified _KYLDEDTIYHL_ ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A 57.47667514258094 0.05071604472125199 2 [YK]{I|L}DEDT{I|L}YH{I|L} 11 0 + 66.596 0 0 4.7275 4.7275 91.517 0 0 0 8.749690573898633 46.72583750530693 8.749690573898633 66.59586277947527 0 1.742992819099939 0 1.110924374808178 0.28872548999643577 + + [YK]{I|L}DEDT{I|L}YH{I|L} 4.7275 + + 410 NaN NaN 196509.8 NaN 8972 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11927 55.743 NaN 552800 35 0 30706 0.261 + 6023 FPDRIMNTF 9 84 578.77670921455 NaN 0 578.776611328125 PEAK HCD FTMS 0 0 0 11925 259026.84375 0.10481479748612182 14 -0.36399078369140625 2 Oxidation (M) _FPDRIM(Oxidation (M))NTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 57.24910588100465 0.030557824717750096 2 TNM{I|L} 4 8 33.32 0 0 2.8835 0 0 165.07965093063575 528.2203463190061 693.2999972496418 0 0 0 0 0 0.7742275032520141 0 0.28872548999643577 0.4247425010840047 TNM{I|L} 2.8835 - 244 + NaN NaN 170085.8 NaN 8973 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11928 55.747 NaN 546930 35 0 83605 0.261 + 16729 LYANMFERL 9 74 586.7917627978626 1171.568972662525 2 586.7924194335938 MULTI HCD FTMS 0 0 0 11925 328402.65625 0.5688395394844673 -13 0.357574462890625 3 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 114.18643581695662 0.002258955990713129 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 111.66 0 0 9.5305 9.5305 93.822 0 0 0 100.20308165862386 9.009461452434238 9.009461452434238 9.208187539523749 0 2.7376954943324545 2 0.7887254899964358 0.6549471895720984 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]Y[RD]N{[ES]|[DT]|[{I|L}C]}{I|L};[Y{I|L}]Y[C(Carbamidomethyl (C))R]E[VG]{I|L};[Y{I|L}]Y[RD]{[VA]|[{I|L}G]}C(Carbamidomethyl (C)){I|L};QY{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9.5305;8.7446;8.0229;7.3964;6.2778;5.6512;5.1104;4.8182;3.7587;3.4545 +;-;+;-;-;-;-;-;-;- + 437 + NaN NaN 173284.2 NaN 8974 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11929 55.75 NaN 246780 35 0 39309 0.261 + 9917 IDEYVETVDM 10 60 607.26800678345 NaN 0 607.2858276367188 PEAK HCD FTMS 0 0 0 11925 16108.125 0.5317857219541702 -2 0.059112548828125 4 Unmodified _IDEYVETVDM_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 10.073929032068715 0.33156240198919784 2 VVT{M(Oxidation (M))|F}Y 5 8 26.498 0 0 2.1853 0 0 165.01169194947403 435.1706942193969 600.182386168871 0 0 0 0 0 0 0 0.8494850021680094 0 VVT{M(Oxidation (M))|F}Y 2.1853 - 70 + NaN NaN 128157 NaN 8975 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11930 55.753 NaN 293650 35 0 38952 0.261 + 34193 YPDIPKEEAF 10 65 604.7957043869296 1207.5768558406592 2 604.7958984375 MULTI HCD FTMS 0 0 0 11925 87352.4609375 0.7546551097609966 1 -0.026172637939453125 5 Unmodified _YPDIPKEEAF_ ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;nc|ENSG00000168610|P40763-3|STAT3 37.07464296494664 0.1707926854601146 2 YPD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H{I|L} 8 4 60.399 0 0 5.0017 0 0 0 209.05642114810783 209.05642114810783 39.42979712652914 0 0 0 0 1 1.5228787452803376 0.3054621874040891 0 YPD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}H{I|L} 5.0017 - 264 + NaN NaN 136839.9 NaN 8976 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11931 55.757 NaN 207650 35 0 30139 0.261 + 27935 TENLQERSW 9 47 581.7796845148953 1161.5448160965905 2 581.7806396484375 MULTI HCD FTMS 0 0 0 11925 120433.84375 0.16674940930668217 7 -0.19781875610351562 6 Unmodified _TENLQERSW_ REV__ENSG00000106034|ENST00000310396|CPED1;REV__nc|ENSG00000106034|A4D0V7-2|CPED1 11.640296217721598 0.25978676193971967 2 SW 2 -1 28.711 0 0 2.4718 0 0 870.4231048762756 0 870.4231048762756 0 11.00833760139686 0 0 0 0.3494850021680094 0 0.4247425010840047 0 SW 2.4718 + + 40 + NaN NaN 124500 NaN 8977 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11932 55.76 NaN 267440 35 0 29790 0.261 + 30030 VFPVPLDALS 10 71 529.2998377170795 1056.585122500959 2 529.2996826171875 MULTI HCD FTMS 0 0 0 11925 52070.82421875 0.7781210959339749 3 -0.07848358154296875 7 Unmodified _VFPVPLDALS_ ENSG00000003400|ENST00000286186|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851-6|CASP10 6.723162845929126 0.4397169348982109 2 [{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}[WQ]{M(Oxidation (M))|F} 7 8 14.454 0 0 1.368 0 0 0 129.14256935514507 129.14256935514507 3.2390874094431865 0 0 0 0 0.5 1.3979400086720375 0 0 [{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}[WQ]{M(Oxidation (M))|F} 1.368 - 57 NaN NaN 130588.5 NaN 8978 2952 11925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11934 55.765 NaN 601160 35 0 162370 0.327 + 8413 GYQRRWFVL 9 54 408.8926902910397 1223.6562414733191 3 408.8926696777344 MULTI HCD FTMS 0 0 0 11933 133771.796875 0.41724906314581434 3 -0.08187484741210938 1 Unmodified _GYQRRWFVL_ ENSG00000110048|ENST00000263847|OSBP;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2 11.494710602746466 0.2610445893512368 2 V{I|L} 2 7 27.959 0 0 2.2849 0 0 993.4935971493073 0 993.4935971493073 0 10.969100130080562 0 0 0 0.8494850021680094 0 0 0 + V{I|L} 2.2849 + + 37 NaN NaN 177323.9 NaN 8979 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11935 55.769 NaN 449540 35 0 74972 0.261 + 35268 YVSMPYMTGF 10 66 598.2625198514154 NaN 0 598.2434692382812 PEAK HCD FTMS 0 0 0 11933 13640.6123046875 1 0 0 2 Unmodified _YVSMPYMTGF_ REV__ENSG00000152683|ENST00000282587|SLC30A6;REV__nc|ENSG00000152683|Q6NXT4-2|SLC30A6;REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6;REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6 10.823927491677226 0.33092050725491123 2 SP[VS]{M(Oxidation (M))|F}YP 7 -1 20.463 0 0 1.7131 0 0 165.0838850862911 249.05446802310783 414.13835310939896 0 0 0 0 0 0 0 0.3252574989159953 0 SP[VS]{M(Oxidation (M))|F}YP 1.7131 - 116 + NaN NaN 149905.3 NaN 8980 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11936 55.773 NaN 488830 35 0 80904 0.261 + 9748 HYDIPKVSW 9 82 572.7938166427276 NaN 0 572.7749633789062 PEAK HCD FTMS 0 0 0 11933 14959.37109375 1 0 0 3 Unmodified _HYDIPKVSW_ ENSG00000105058|ENST00000263384|FAM32A;nc|ENSG00000105058|Q9Y421-3|FAM32A 12.531546534597751 0.23452071659215576 2 ASVS 4 7 29.438 0 0 2.5742 0 0 595.3109482521357 201.06691919498283 796.3778674471185 0 0 0 0 0 0 0 0.75 0 ASVS 2.5742 - 396 + NaN NaN 159117 NaN 8981 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11937 55.776 NaN 543010 35 0 98503 0.261 + 18306 MPEPKFMY 8 76 521.7404653986475 1041.466377864095 2 521.7508544921875 MULTI HCD FTMS 0 0 0 11933 102399.03125 0.8413157519237596 4 -0.10481643676757812 4 Unmodified _MPEPKFMY_ ENSG00000035681|ENST00000038176|NSMAF;ENST00000519858.1_1_8:59513803-59535956:-|nuORF;nc|ENSG00000035681|Q92636-2|NSMAF 7.910154910731844 0.5302565402355366 2 EEP{I|L}{I|L} 5 6 39.508 0 0 3.7935 0 0 442.16926772285314 0 442.16926772285314 0 24.00174309593268 0 0 0 0 0 0.6549471895720985 0 EEP{I|L}{I|L} 3.7935 - 111 NaN NaN 173542.5 NaN 8982 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11938 55.78 NaN 249790 35 0 28594 0.261 + 336 AGLEGPDVPL 10 49 484.258342103261 966.502131273322 2 484.25811767578125 MULTI HCD FTMS 0 0 0 11933 94551.375 1 0 0 5 Unmodified _AGLEGPDVPL_ REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33;REV__nc|ENSG00000140481|Q8N5R6-5|CCDC33 14.838274106304384 0.3723198072575719 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4464 0 0 801.4230277350392 0 801.4230277350392 0 4.68765315847925 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4464 - 54 + NaN NaN 123267 NaN 8983 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11939 55.783 NaN 212510 35 0 11588 0.261 + 16288 LQQCEHCRL 9 59 565.2660106498323 1128.5174683664645 2 565.7669677734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LQQCEHCRL_ REV__ENSG00000137074|ENST00000379817|APTX;REV__ENST00000379825.6_2_9:32973498-32973681:-|nuORF;REV__nc|ENSG00000137074|Q7Z2E3-10|APTX;REV__nc|ENSG00000137074|Q7Z2E3-2|APTX;REV__nc|ENSG00000137074|Q7Z2E3-3|APTX;REV__nc|ENSG00000137074|Q7Z2E3-4|APTX;REV__nc|ENSG00000137074|Q7Z2E3-5|APTX;REV__nc|ENSG00000137074|Q7Z2E3-8|APTX;REV__nc|ENSG00000137074|Q7Z2E3|APTX 9.38312468134398 0.279288223203164 2 Q{I|L}Q{I|L}MQ{I|L} 7 -1 32.479 0 0 2.878 0 0 256.0320690518145 0 256.0320690518145 0 23.526457331334854 0 0 0 0.4247425010840047 0 0 0.3494850021680094 Q{I|L}Q{I|L}MQ{I|L} 2.878 - 259 + NaN NaN 119688.1 NaN 8984 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11940 55.786 NaN 379570 35 0 31079 0.261 + 2557 DTANDGFVRL 10 100 554.2747700737892 1106.5349872143784 2 554.7884521484375 MULTI HCD FTMS 0 0 0 11933 39420.5078125 0.930272753963729 -1 0.026172637939453125 7 Unmodified _DTANDGFVRL_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant 77.04852534044906 0.009233459585674255 2 ESANDG{M(Oxidation (M))|F}VR{I|L} 10 2 + 84.289 0 0 7.6174 7.6174 90.721 0 0 0 63.31964878672025 11.517412290202671 11.517412290202671 9.164539485499262 0 2.305462187404089 1.154901959985743 0 0 ESANDG{M(Oxidation (M))|F}VR{I|L};ESAGGDG{M(Oxidation (M))|F}VR{I|L};G{[ET]|[MV]}NDG{M(Oxidation (M))|F}VR{I|L};{[ES]|[DT]|[{I|L}C]}AND[R{M(Oxidation (M))|F}]R{I|L};EQ[SG]DG{M(Oxidation (M))|F}VR{I|L};G{[ET]|[MV]}GGDG{M(Oxidation (M))|F}VR{I|L};{[DS]|[MA]|[CV]|TT}[QA]DG{M(Oxidation (M))|F}VR{I|L};EH{[{M(Oxidation (M))|F}C]|[YS]}G{M(Oxidation (M))|F}VR{I|L};E[AG][SG]DG{M(Oxidation (M))|F}VR{I|L};G{[ET]|[MV]}ND[R{M(Oxidation (M))|F}]R{I|L} 7.6174;6.7891;4.7547;4.0807;4.0434;3.9265;3.7172;3.2912;3.2151;2.992 -;-;-;-;-;-;-;-;-;- 1055 + NaN NaN 137914.3 NaN 8985 2953 11933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11942 55.791 NaN 7466000 35 0 812810 0.327 + 24089 RYALQLQQI 9 119 566.8271974242555 1131.6398419153109 2 566.8276977539062 MULTI HCD FTMS 0 0 0 11941 4626853 0.8525786301664691 1 -0.026157379150390625 1 Unmodified _RYALQLQQI_ CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13 136.33342141710068 0.00022087650154924235 2 [YR]A{I|L}Q{I|L}QQ{I|L} 9 0 + 94.849 0 0 8.3816 8.3816 92.601 0 0 0 14.485092230417536 11.237125054200234 11.237125054200234 9.208187539523749 0 2.1237125054200234 1.0969100130080565 0 1.4049471895720984 + + [YR]A{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}Q[AG]{I|L};[YR]A{I|L}[AG]{I|L}QQ{I|L};[YR]A{I|L}Q{I|L}[AG]Q{I|L};[YR]A{I|L}QQ{I|L}Q{I|L};[YR]A{I|L}Q{I|L}Q{I|L}Q;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}Q{I|L}QQ{I|L};[YR]A{I|L}[AG]{I|L}[AG]Q{I|L};[YR]A{I|L}[AG]{I|L}Q[AG]{I|L};[YR]A{I|L}Q{I|L}[AG][AG]{I|L} 8.3816;7.5679;7.5679;7.5679;7.4291;7.3886;7.1016;6.758;6.758;6.758 +;-;-;-;-;-;-;-;-;- + 8570 NaN NaN 651434.4 NaN 8986 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11943 55.795 NaN 692050 35 0 203430 0.261 + 18325 MPETTETVL 9 57 510.74950396315467 1019.4844549931094 2 510.74957275390625 MULTI HCD FTMS 0 0 0 11941 543856.6875 0.6395493839958953 4 -0.10492706298828125 2 Unmodified _MPETTETVL_ ENSG00000231389|ENST00000419277|HLA-DPA1 52.268347100219714 0.028397529699942435 2 TTETV{I|L} 6 3 63.18 0 0 6.1973 0 0 357.13545424629064 0 357.13545424629064 0 48.11874108507752 0 0 0 1.4247425010840047 0 1.2302046884880937 0 + TTETV{I|L} 6.1973 + + 48 NaN NaN 200282.9 NaN 8987 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11944 55.799 NaN 722830 35 0 102560 0.261 -1 VMAPRTLLL 9 70 515.3098989499737 1028.6052449667473 2 515.3099975585938 MULTI HCD FTMS 0 0 0 11941 369463.5625 1 0 0 3 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 31.26834338654808 0.10542797264966089 2 [{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L} 9 -1 + 44.587 0 0 4.3347 4.3347 90.397 0 0 0 7.147642715192504 26.62848732905715 7.147642715192504 44.5872875024979 0 1.3494850021680094 0 0 0 [{M(Oxidation (M))|F}V]A[RP]{I|L}T{I|L}{I|L} 4.3347 - 55 NaN NaN 193549.9 NaN 8988 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11945 55.802 NaN 515130 35 0 37809 0.261 + 28399 TPFHEIMSL 9 90 545.7655737961937 1089.5165946591874 2 545.7656860351562 MULTI HCD FTMS 0 0 0 11941 176236.765625 0.4971085326713419 15 -0.3881263732910156 4 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 61.357469665136826 0.01568246967499496 2 E[YT]{I|L}{M(Oxidation (M))|F}S{I|L} 7 5 45.366 0 0 4.1639 0 0 218.10551650215 0 218.10551650215 0 25.10498689244873 0 0 0 0.8807196863200843 0 1.110924374808178 0 E[YT]{I|L}{M(Oxidation (M))|F}S{I|L} 4.1639 - 1594 NaN NaN 175827.3 NaN 8989 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11946 55.806 NaN 264890 35 0 53905 0.261 + 25383 SEGELVVKF 9 71 504.2741396170996 NaN 0 504.2738952636719 PEAK HCD FTMS 0 0 0 11941 44304.08984375 0.6463339967720475 1 -0.026157379150390625 5 Unmodified _SEGELVVKF_ ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D 47.748688679222035 0.05342496295576811 2 KV 2 8 22.717 0 0 2.2569 0 0 165.0796199290707 611.2684420221311 776.3480619512018 0 0 0 0 0 1.1747425010840047 0 0 0 KV 2.2569 - 30 + NaN NaN 123604.5 NaN 8990 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11947 55.809 NaN 122550 35 0 15975 0.261 + 6715 FPPSDEQL 8 48 466.7216919800219 931.4288310268438 2 466.7210998535156 MULTI HCD FTMS 0 0 0 11941 34613.76953125 0.36737976556683977 -12 0.32122039794921875 6 Unmodified _FPPSDEQL_ nc|ENSG00000211592|P01834|IGKC 10.073929032068715 0.5196730168178844 2 EQ{I|L} 3 5 31.867 0 0 3.4213 0 0 543.2306996076187 0 543.2306996076187 0 31.866903183326514 0 0 0 0.805462187404089 0 0 0 + EQ{I|L} 3.4213 + + 16 NaN NaN 104287.1 NaN 8991 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11948 55.812 NaN 115860 35 0 5782.6 0.261 + 322 AFYWWERCN 9 40 637.7735534760793 1273.5325540189585 2 637.7736206054688 MULTI HCD FTMS 0 0 0 11941 33536.1328125 0.6296057140279915 2 -0.055721282958984375 7 Unmodified _AFYWWERCN_ REV__ENSG00000048707|ENST00000620676|VPS13D;REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D;REV__VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;REV__VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant 1.4819007175156935 0.3397831423917744 2 DY{[CP]|[EA]} 4 -1 16.198 0 0 1.2719 0 0 777.3339710919937 0 777.3339710919937 0 16.197887582883936 0 0 0 0 0 0 0 DY{[CP]|[EA]} 1.2719 - 3 NaN NaN 104310.4 NaN 8992 2954 11941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11950 55.817 NaN 1114900 35 0 106200 0.327 + 18266 MPDVDLHL 8 87 478.23139562648873 954.4482383197775 2 478.2313232421875 MULTI HCD FTMS 0 0 0 11949 561540.6875 0.5102383283204801 -10 0.2755088806152344 1 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 72.529 0 0 7.599 7.599 89.482 0 0 0 4.6040937697618745 52.90775268610524 4.6040937697618745 6.63303128443836 0 2.305462187404089 0 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}]D[DV]P{M(Oxidation (M))|F}{I|L};[H{I|L}]D[DP]V{M(Oxidation (M))|F}{I|L};{I|L}[YT]QQCS{I|L};[YG]GK{I|L}DCS{I|L};[YN][DV][KG]{M(Oxidation (M))|F}{I|L} 7.599;6.9041;5.2521;2.7389;2.6688;0.48933;0.31276;0.11663 +;+;-;-;-;-;-;- + 933 NaN NaN 254271.5 NaN 8993 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11951 55.822 NaN 1476800 35 0 244130 0.261 + 15438 LPDKWQHDLF 10 88 433.55566425157747 1297.6451633549325 3 433.55572509765625 MULTI HCD FTMS 0 0 0 11949 524123.78125 0.7222990230163797 -2 0.052310943603515625 2 Unmodified _LPDKWQHDLF_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 38.558800761779466 0.1579133335467903 2 DP{I|L}{M(Oxidation (M))|F} 4 7 41.459 0 0 3.1949 0 0 807.3997669904312 0 807.3997669904312 0 -2.1112716355598593 -2.1112716355598593 0 0 0.8494850021680094 0 0.7302046884880937 0 DP{I|L}{M(Oxidation (M))|F} 3.1949 - 102 NaN NaN 312965.8 NaN 8994 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11952 55.825 NaN 733550 35 0 260820 0.261 + 29348 TYPENWRAF 9 63 592.2803518491406 1182.5461507650812 2 592.2802124023438 MULTI HCD FTMS 0 0 0 11949 322183.6875 0.9259693558895312 1 -0.02956390380859375 3 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 23.789781309258295 0.1548179064208189 2 [YT]PE 4 5 43.94 0 0 3.7157 0 0 0 689.3171770762993 689.3171770762993 22.954168023219523 0 0 0 0 0.7742275032520141 2 0 0 + [YT]PE 3.7157 + + 100 + NaN NaN 210986.9 NaN 8995 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11953 55.829 NaN 521300 35 0 45542 0.261 + 19992 NYIDKVRFL 9 86 584.3292495682689 1166.6439462033377 2 584.3298950195312 MULTI HCD FTMS 0 0 0 11949 226487.421875 0.061016960525222215 12 -0.31658935546875 4 Unmodified _NYIDKVRFL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 128.93241758739586 0.0006697181619526092 2 NY{I|L}DKVR{M(Oxidation (M))|F}{I|L} 9 0 + 96.124 0 0 8.2394 8.2394 96.704 0 0 0 78.16524461703182 4.78397125236296 4.78397125236296 42.245462655597095 0 2.309894379144197 2 0.6861818737241735 0 + + NY{I|L}DKVR{M(Oxidation (M))|F}{I|L};{I|L}[YN]DKVR{M(Oxidation (M))|F}{I|L};[SG][{M(Oxidation (M))|F}V]DKVR{M(Oxidation (M))|F}{I|L} 8.2394;4.6183;3.1615 +;-;- + 330 + NaN NaN 168708.7 NaN 8996 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11954 55.832 NaN 653730 35 0 51527 0.261 + 6965 FPVRDGVVL 9 98 501.29256912307454 1000.5705853129491 2 501.29254150390625 MULTI HCD FTMS 0 0 0 11949 164141.8125 0.2103712833040064 -8 0.22306060791015625 5 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 43.77239144664712 0.04802738721622131 2 SQ{I|L}KC(Carbamidomethyl (C))V{I|L} 7 7 38.324 0 0 3.8303 0 0 154.11039931465 0 154.11039931465 0 11.580378712870413 0 0 0 0.7429928190999391 0 0.5629529932484498 0.3494850021680094 SQ{I|L}KC(Carbamidomethyl (C))V{I|L} 3.8303 - 828 NaN NaN 202310.4 NaN 8997 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11955 55.835 NaN 285580 35 0 40634 0.261 + -1 ACWRGCALI 9 56 525.2539350767738 1048.4933172203475 2 525.767822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _AC(Carbamidomethyl (C))WRGCALI_ REV__ENST00000423344.6_1_10:97667724-97671081:+|nuORF 8.593279151180031 0.2858735984551981 2 G{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.8564 0 0 826.3928361185882 0 826.3928361185882 0 3.789850105233299 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.8564 - 74 + NaN NaN 131391.9 NaN 8998 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11956 55.839 NaN 226410 35 0 30039 0.261 + 1758 CLIMFYFIAL 10 44 617.3267295745695 1232.638906215939 2 617.3280639648438 MULTI HCD FTMS 0 0 0 11949 62511.89453125 0.5815586993966677 -7 0.1900787353515625 7 Unmodified _CLIMFYFIAL_ ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7 7.910154910731844 0.4334339971971892 2 {I|L}A{I|L} 3 7 30.445 0 0 2.4699 0 0 917.4248610160533 0 917.4248610160533 0 23.455612550363796 0 0 0 0.4247425010840047 0 0 0 + {I|L}A{I|L} 2.4699 + + 7 NaN NaN 118348.4 NaN 8999 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11957 55.842 NaN 139750 35 0 12024 0.261 -1 HWMLYECES 9 43 627.7493749567878 NaN 0 627.7498779296875 PEAK HCD FTMS 0 0 0 11949 26574.87890625 0.4653251117679323 7 -0.19129180908203125 8 Carbamidomethyl (C) _HWMLYEC(Carbamidomethyl (C))ES_ ENSG00000101473|ENST00000217455|ACOT8;ENST00000484975.5_1_20:44472013-44472349:-|nuORF 0.6014990680409731 0.29233206172879045 2 M 1 -1 3.9794 0 0 0.31747 0 0 663.1427795993194 456.2750338190063 1119.4178134183257 0 0 0 0 0 0 0 0 0 M 0.31747 + + 1 + NaN NaN 106858.8 NaN 9000 2955 11949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11959 55.847 NaN 1836800 35 0 310060 0.327 + 13371 KYNANFVTF 9 105 552.2798803984971 1102.545207863794 2 552.2798461914062 MULTI HCD FTMS 0 0 0 11958 1137383.75 0.9294031835210392 1 -0.02294158935546875 1 Unmodified _KYNANFVTF_ ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF;nc|ENSG00000173120|Q9Y2K7-3|KDM2A 139.13845188893973 5.0762478717762276E-05 2 [YK]NQG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F} 9 2 + 89.068 0 0 8.0784 8.0784 92.157 0 0 0 6.174727504281179 56.52922230622188 6.174727504281179 9.208187539523749 0 2.3807196863200843 0 0.28872548999643577 2.274227503252014 [YK]NQG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]N[AG]G{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]GGQG{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[YK]GG[AG]G{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[Y{I|L}]AEG[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[Y{I|L}][HV]NP[DV]{M(Oxidation (M))|F};[KT][HQ]{[QD]|[EN]|[WG]|[KD]|[RS]}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{I|L}G[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]VEG[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}EG[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F} 8.0784;7.2432;7.2432;6.412;4.3677;4.0132;3.7668;3.6204;3.4607;3.4144 -;-;-;-;-;-;-;-;-;- 8202 NaN NaN 369690 NaN 9001 2956 11958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11960 55.851 NaN 245590 35 0 52534 0.263 + 4931 FAMIDSEEWF 10 65 425.51806566703794 1273.5323676013138 3 425.5181884765625 MULTI HCD FTMS 0 0 0 11958 61124.328125 0.26706436847696474 4 -0.109344482421875 2 Unmodified _FAMIDSEEWF_ REV__ROCK1|p.R125S|1|0.77|ENSG00000067900|chr18:21049131-21049131|C/A|missense_variant 10.823927491677226 0.4098686510432541 2 DYAE 4 -1 36.983 0 0 2.9039 0 0 777.3354767763723 0 777.3354767763723 0 21.49797211252192 0 0 0 0.805462187404089 0 0 0 DYAE 2.9039 - 28 NaN NaN 121277.6 NaN 9002 2956 11958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11961 55.855 NaN 343320 35 0 46050 0.261 -1 RYMVHLLEL 9 62 595.3233785573217 1188.6322041814433 2 595.3238525390625 MULTI HCD FTMS 0 0 0 11958 95835.9453125 0.6528270223001053 3 -0.08977127075195312 3 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ ENSG00000137814|ENST00000260372|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 13.042465956692817 0.2476723265019929 2 {[QN]|[E{I|L}]|[KN]}[WH]H{I|L}{I|L}E{I|L} 9 -1 + 56.99 0 0 4.7946 4.7946 88.868 0 0 0 9.021723764317002 55.730932472452984 9.021723764317002 15.457574905606748 0 0.28872548999643577 1.5228787452803376 0 0 {[QN]|[E{I|L}]|[KN]}[WH]H{I|L}{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}{I|L}{I|L}HD[HV][VP] 4.7946;3.4941 -;- 94 NaN NaN 138268.4 NaN 9003 2956 11958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11962 55.858 NaN 309680 35 0 25650 0.261 + -1 MVMCLHRR 8 63 531.262531637297 NaN 0 531.281494140625 PEAK HCD FTMS 0 0 0 11958 6584.63037109375 0.19382742634504244 -1 0.02956390380859375 4 Oxidation (M) _MVM(Oxidation (M))CLHRR_ REV__ENSG00000069020|ENST00000403625|MAST4;REV__ENSG00000099308|ENST00000687212|MAST3;REV__ENSG00000105613|ENST00000251472|MAST1;REV__ENST00000589040.1_1_19:12963033-12975643:+|nuORF;REV__nc|ENSG00000069020|O15021-2|MAST4;REV__nc|ENSG00000069020|O15021-3|MAST4;REV__nc|ENSG00000069020|O15021-6|MAST4;REV__nc|ENSG00000099308|O60307|MAST3 9.347437153973935 0.38822285293237185 2 EE{I|L}EK 5 -1 25.547 0 0 2.409 0 0 230.0713463669244 199.10837732486564 429.17972369179006 0 0 0 0 0 0 0 0.5994850021680094 0 EE{I|L}EK 2.409 - 128 + NaN NaN 131605.2 NaN 9004 2956 11958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11963 55.861 NaN 108840 35 0 7362.7 0.261 + -1 CCSCLLGWW 9 45 621.2499922419918 NaN 0 620.851318359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))SC(Carbamidomethyl (C))LLGWW_ REV__ENSG00000153162|ENST00000283147|BMP6 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105023.2 NaN 9005 2956 11958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11964 55.865 NaN 111660 35 0 17254 0.264 + 3499 EHMGGCHF 8 61 459.17235117698044 NaN 0 459.53997802734375 PEAK HCD FTMS 0 0 0 11958 6929.0712890625 0.6992254226915674 2 -0.049205780029296875 6 Unmodified _EHMGGCHF_ ENST00000494375.2_1_19:42042089-42043170:+|nuORF 2.8892196856762586 0.38822285293237185 2 EN 2 7 9.464 0 0 1.0328 0 0 94.94820469595466 575.2744234674436 670.2226281633983 0 0 0 0 0 0 0 0 0 EN 1.0328 - 25 + NaN NaN 109807.7 NaN 9006 2956 11958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11966 55.87 NaN 1055500 35 0 178740 0.327 + 16032 LPSDTRLVL 9 89 507.30315752088137 1012.5917621085628 2 507.3031311035156 MULTI HCD FTMS 0 0 0 11965 410461.03125 0.810274598496297 2 -0.06682968139648438 1 Unmodified _LPSDTRLVL_ ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1 76.82478488871298 0.006879825292024087 2 {I|L}PSD{I|L} 5 4 74.099 0 0 7.3177 0 0 0 484.29917322330317 484.29917322330317 58.61432819416656 0 0 0 0 1.3252574989159953 1.6989700043360187 1.066901560044258 0 {I|L}PSD{I|L} 7.3177 - 750 + NaN NaN 251977.1 NaN 9007 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11967 55.874 NaN 280250 35 0 20916 0.261 + 31660 VYKAFVMETF 10 62 625.8096579261396 1249.6047629190791 2 626.3112182617188 MULTI HCD FTMS 0 0 0 11965 123616.21875 0.8337255838416888 3 -0.08640289306640625 2 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 107.09958533191995 5.475541806694616E-05 2 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 111.68 0 0 8.9368 8.9368 98.622 0 0 0 2.6991783829530647 2.6991783829530647 2.6991783829530647 111.67525978212623 0 3.2302046884880937 2 0.4247425010840047 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 8.9368 + + 289 NaN NaN 139449.9 NaN 9008 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11968 55.878 NaN 438940 35 0 54947 0.264 + 24551 RYLLFARQF 9 56 405.23292834402355 1212.6769556322706 3 405.2329406738281 MULTI HCD FTMS 0 0 0 11965 81928.09375 0.437743462230357 -5 0.13098907470703125 3 Unmodified _RYLLFARQF_ ENSG00000076003|ENST00000264156|MCM6 43.981846655682396 0.04706587046877104 2 [YR]{I|L}{I|L}{M(Oxidation (M))|F}ARQ{M(Oxidation (M))|F} 9 0 + 69.346 0 0 5.7184 5.7184 88.118 0 0 0 5.6424927368725974 62.356537694451575 5.6424927368725974 9.208187539523749 0 1.774227503252014 0 0 0 + + [YR]{I|L}{I|L}{M(Oxidation (M))|F}ARQ{M(Oxidation (M))|F};[YR]{I|L}{I|L}{M(Oxidation (M))|F}AR[AG]{M(Oxidation (M))|F} 5.7184;4.9591 +;- + 123 NaN NaN 160971.4 NaN 9009 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11969 55.881 NaN 207470 35 0 21928 0.261 + 31318 VWPKKGTAVFW 11 56 440.24835272688586 1317.7232287808577 3 440.2481384277344 MULTI HCD FTMS 0 0 0 11965 31658.578125 0.2641367460263608 -6 0.16054153442382812 4 Unmodified _VWPKKGTAVFW_ ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-2|P4HA1;nc|ENSG00000122884|P13674-3|P4HA1 12.227587767072771 0.3505430386502343 2 VW{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F} 5 7 48.456 0 0 3.6772 0 0 0 678.3946016900999 678.3946016900999 23.239087409443187 0 0 0 0 0.5 1.6989700043360187 0.4247425010840047 0 VW{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F} 3.6772 - 36 + NaN NaN 116542.2 NaN 9010 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11970 55.884 NaN 146750 35 0 19765 0.261 + 13055 KYLDEDTIYHL 11 55 470.5696998824829 1408.6872702476487 3 470.5697021484375 MULTI HCD FTMS 0 0 0 11965 44351.3046875 0.11405555544393926 6 -0.17821121215820312 5 Unmodified _KYLDEDTIYHL_ ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A 14.170726826480097 0.3336124043171337 2 {I|L} 1 10 11.99 0 0 0.85113 0 0 864.3844881204988 428.19304389913185 1292.5775320196306 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.85113 + + 12 + NaN NaN 106862.3 NaN 9011 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11971 55.888 NaN 262020 35 0 21118 0.261 + 2558 DTANDGFVRL 10 76 554.2747700737892 1106.5349872143784 2 554.7900390625 MULTI HCD FTMS 0 0 0 11965 40548.38671875 0.9568892303735554 3 -0.08640289306640625 6 Unmodified _DTANDGFVRL_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant 15.738622578938676 0.3638982514236938 2 {M(Oxidation (M))|F} 1 9 17.742 0 0 1.6034 0 0 941.4560362639862 0 941.4560362639862 0 3.037275116073344 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.6034 + + 414 + NaN NaN 139263.4 NaN 9012 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11972 55.891 NaN 91850 35 0 5089.5 0.262 -1 0 57 455.24870442657914 454.24142795997915 1 455.24835205078125 MULTI HCD FTMS 0 0 0 11965 33888.44140625 0.23736996070721325 -16 0.4327430725097656 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 99464.4 NaN 9013 2957 11965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11974 55.896 NaN 1345200 35 0 181430 0.327 + 1967 DAIRDAEIL 9 91 508.27461939355817 1014.5346858539164 2 508.274658203125 MULTI HCD FTMS 0 0 0 11973 603183.3125 0.5912510170525427 -2 0.049205780029296875 1 Unmodified _DAIRDAEIL_ ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 71.70789743142352 0.008535567138151097 2 {[DA]|[EG]}{I|L}REGE{I|L}{I|L} 9 2 + 84.764 0 0 8.355 8.355 90.932 0 0 0 12.49491555391522 12.49491555391522 12.49491555391522 7.257724967479859 0 2.1549471895720984 1.3979400086720375 0.6382104921644451 0 {[DA]|[EG]}{I|L}REGE{I|L}{I|L};{[DA]|[EG]}{I|L}READ{I|L}{I|L};{[DA]|[EG]}{I|L}ERGE{I|L}{I|L};{[DA]|[EG]}{I|L}REDA{I|L}{I|L};DA{I|L}REGE{I|L}{I|L};{[DA]|[EG]}{I|L}ERAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}AREGE{I|L}{I|L};{[DA]|[EG]}{I|L}ERDA{I|L}{I|L};{[DA]|[EG]}{I|L}[VG]EGKN{I|L};{[DA]|[EG]}E{I|L}RGE{I|L}{I|L} 8.355;7.6396;7.4001;7.1693;7.1234;6.6847;6.3793;6.2144;6.0765;6.0742 -;-;-;-;-;-;-;-;-;- 3404 NaN NaN 292117.2 NaN 9014 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11975 55.9 NaN 794550 35 0 143700 0.261 + 16730 LYANMFERL 9 74 586.7917627978626 1171.568972662525 2 586.7922973632812 MULTI HCD FTMS 0 0 0 11973 441234.5 0.7642801451447128 -7 0.18680572509765625 2 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 160.6895995991744 8.89223804155775E-09 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}R 9 2 + 127.78 0 0 10.906 10.906 94.524 0 0 0 110.35335007137462 18.027646714607357 18.027646714607357 9.208187539523749 0 2.4291746928241125 2 1.110924374808178 0.9802046884880937 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}R;{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L}R;[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]Y[RD]N{[ES]|[DT]|[{I|L}C]}{I|L};[Y{I|L}]Y[C(Carbamidomethyl (C))R]E[VG]{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}[QA]A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]AGG{M(Oxidation (M))|F}[QA]A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 10.906;10.12;8.9581;6.9087;5.0022;4.5879;4.5173;3.1325 -;-;+;-;-;-;-;- + 616 + NaN NaN 204760.7 NaN 9015 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11976 55.904 NaN 412720 35 0 24171 0.261 + 34289 YPDRIMNTF 9 82 578.77670921455 NaN 0 578.77685546875 PEAK HCD FTMS 0 0 0 11973 154650.25 0.0625789759866466 20 -0.5153121948242188 3 Unmodified _YPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 61.60191391372663 0.022376469204184533 2 TN{M(Oxidation (M))|F}R 4 8 30.926 0 0 2.6763 0 0 165.0816884772375 469.20542322330317 634.2871117005407 0 0 0 0 0 0.9749073637206093 0 0 0.6139829889124311 TN{M(Oxidation (M))|F}R 2.6763 - 147 + NaN NaN 150184.4 NaN 9016 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11977 55.907 NaN 325110 35 0 33040 0.261 + 7846 FYSIINSGCF 10 62 575.7653849242292 1149.5162169152584 2 576.2852172851562 MULTI HCD FTMS 0 0 0 11973 14486.509765625 0.1899593563273216 7 -0.19403457641601562 4 Unmodified _FYSIINSGCF_ REV__ENSG00000150261|ENST00000279783|OR8K1;REV__OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant 8.745405648335112 0.42901288225909884 2 W 1 -1 14.604 0 0 1.2705 0 0 945.4273172343975 0 945.4273172343975 0 3.802112417116062 0 0 0 0 0 0 0 W 1.2705 - 109 + NaN NaN 131803.4 NaN 9017 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11978 55.911 NaN 234700 35 0 27080 0.261 -1 KYMYFTVVM 9 60 607.2853599130106 1212.556166892821 2 607.2860717773438 MULTI HCD FTMS 0 0 0 11973 98364.8515625 0.7513325115880173 7 -0.19403457641601562 5 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ ENSG00000139289|ENST00000266671|PHLDA1 32.78568957990786 0.09846250359632436 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[Y{M(Oxidation (M))|F}]TVV{M(Oxidation (M))|F} 9 -1 + 53.394 0 0 4.4035 4.4035 90.764 0 0 0 5.6424927368725974 34.4800716418942 5.6424927368725974 53.394484365698744 0 1.8807196863200843 0 0.3494850021680094 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y[Y{M(Oxidation (M))|F}]TVV{M(Oxidation (M))|F} 4.4035 - 119 NaN NaN 122351.1 NaN 9018 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11979 55.914 NaN 435900 35 0 149320 0.264 + -1 CITDPVYIKL 10 66 407.8902192187325 1220.6488282563976 3 407.89019775390625 MULTI HCD FTMS 0 0 0 11973 123086.0703125 0.8637871854362403 8 -0.20673751831054688 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))ITDPVYIKL_ REV__ENSG00000176927|ENST00000394835|EFCAB5;REV__nc|ENSG00000176927|A4FU69-2|EFCAB5;REV__nc|ENSG00000176927|A4FU69-3|EFCAB5;REV__nc|ENSG00000176927|A4FU69-4|EFCAB5;REV__nc|ENSG00000176927|A4FU69-5|EFCAB5 5.783430956126388 0.4446910851847804 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1964 0 0 1055.5702129993647 0 1055.5702129993647 0 0.14014361800121833 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1964 - 18 + NaN NaN 149953.9 NaN 9019 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11980 55.917 NaN 178780 35 0 21741 0.261 -1 IDPSGRLCTFF 11 50 438.2164979220106 1311.6276643662318 3 438.54998779296875 MULTI HCD FTMS 0 0 0 11973 41471.67578125 0.5022270324213497 1 -0.04056549072265625 7 Carbamidomethyl (C) _IDPSGRLC(Carbamidomethyl (C))TFF_ ENSG00000050628|ENST00000306666|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-12|PTGER3;nc|ENSG00000050628|P43115-2|PTGER3;nc|ENSG00000050628|P43115-3|PTGER3;nc|ENSG00000050628|P43115-4|PTGER3;nc|ENSG00000050628|P43115-5|PTGER3;nc|ENSG00000050628|P43115-6|PTGER3;nc|ENSG00000050628|P43115-7|PTGER3;nc|ENSG00000050628|P43115-8|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3 6.234356020891411 0.3915788988406848 2 {I|L}{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.8652 0 0 1033.4644696414255 0 1033.4644696414255 0 17.47425010840047 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8652 - 5 + NaN NaN 108735.7 NaN 9020 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11981 55.921 NaN 361600 35 0 34674 0.261 -1 YLAAVALHIM 10 60 559.3059123529302 NaN 0 559.2935180664062 PEAK HCD FTMS 0 0 0 11973 23173.9140625 0.6723150364216042 -3 0.07876968383789062 8 Oxidation (M) _YLAAVALHIM(Oxidation (M))_ ENSG00000112053|ENST00000490799|SLC26A8;ENST00000486155.1_1_6:35928714-35992326:-|nuORF;nc|ENSG00000112053|Q96RN1-4|SLC26A8;SLC26A8|p.S369Kfs*27|1|0.07|ENSG00000112053|chr6:35977272-35977273|-/TTTTT|frameshift_variant 24.67388899826682 0.24277442800835877 2 YHG 3 -1 13.188 0 0 1.1811 0 0 131.1210874373317 625.3113497369749 756.4324371743066 0 0 0 0 0 0 0 0 0 YHG 1.1811 - 78 + NaN NaN 138299.5 NaN 9021 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11982 55.924 NaN 257360 35 0 12230 0.261 + 9647 HVASSEFLSW 10 70 581.7796845148953 1161.5448160965905 2 581.7803955078125 MULTI HCD FTMS 0 0 0 11973 49894.484375 0.06908253974242795 13 -0.3354072570800781 9 Unmodified _HVASSEFLSW_ REV__CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant;REV__ENSG00000188596|ENST00000524981|CFAP54;REV__nc|ENSG00000188596|Q96N23-2|CFAP54 19.256988751693697 0.33098864134661865 2 SW 2 -1 25.217 0 0 2.1709 0 0 870.4234486310562 0 870.4234486310562 0 15.150831492370838 0 0 0 0.9247425010840047 0 0.5 0 SW 2.1709 + + 115 NaN NaN 120570.6 NaN 9022 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11983 55.932 NaN 380190 35 0 36238 0.261 + 27590 TAELDPHIL 9 65 504.77276849228826 1007.5309840513765 2 504.77215576171875 MULTI HCD FTMS 0 0 0 11973 75804.3359375 0.7879013104167727 -4 0.10492706298828125 10 Unmodified _TAELDPHIL_ ENSG00000136937|ENST00000375147|NCBP1 46.020951573049366 0.037705236580089195 2 [TA]E{I|L}D[KG]K{M(Oxidation (M))|F} 9 4 + 66.756 0 0 6.6257 6.6257 92.764 0 0 0 52.77696854845523 5.686362358410122 5.686362358410122 23.00546370719681 0 1.805462187404089 1.6989700043360187 0.3807196863200844 0 [TA]E{I|L}D[KG]K{M(Oxidation (M))|F};[TA]E{I|L}[W{I|L}][Y{I|L}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{M(Oxidation (M))|F}V]{I|L}E[PG];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[KC]E[PG] 6.6257;4.3424;2.936;2.0409 -;-;-;- 90 + NaN NaN 143228 NaN 9023 2958 11973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11985 55.937 NaN 452440 35 0 68858 0.327 + 5725 FPAGYMYPSM 10 85 598.2430853481478 1194.4716177630955 2 598.2439575195312 MULTI HCD FTMS 0 0 0 11984 154649.21875 0.6818001775874694 21 -0.5302085876464844 1 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 74.42276476219924 0.012344753082416305 2 [YT]DR{M(Oxidation (M))|F}YPST 9 6 67.295 0 0 5.6339 0 0 0 60.976836799733434 60.976836799733434 56.498264406583715 0 0 0 0 1.8494850021680094 1.5228787452803376 1.2134679910804405 0 [YT]DR{M(Oxidation (M))|F}YPST 5.6339 - 534 NaN NaN 175187.8 NaN 9024 2959 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11986 55.941 NaN 580640 35 0 43169 0.261 + 20892 PIYKDDEY 8 81 521.7404653986475 1041.466377864095 2 521.7508544921875 MULTI HCD FTMS 0 0 0 11984 12161.4296875 0.09991893709450494 10 -0.24263381958007812 2 Unmodified _PIYKDDEY_ tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1 6.354104778181461 0.5325651638111438 2 P{I|L}{I|L} 3 6 20.177 0 0 1.9374 0 0 700.2540576361479 0 700.2540576361479 0 -3.375912339897205 -3.375912339897205 0 0 0 0 0 0 P{I|L}{I|L} 1.9374 - 217 NaN NaN 180282.6 NaN 9025 2959 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11987 55.945 NaN 197130 35 0 21463 0.261 + 7587 FYHKVNFSP 9 61 569.7866496916232 1137.5587464500463 2 569.787109375 MULTI HCD FTMS 0 0 0 11984 74286.5234375 0.2801915952495986 4 -0.11138153076171875 3 Unmodified _FYHKVNFSP_ ENSG00000134240|ENST00000369406|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;nc|ENSG00000134240|P54868-3|HMGCS2 4.75600775471527 0.31496297302216103 2 PN{M(Oxidation (M))|F} 3 7 16.995 0 0 1.494 0 0 148.07569316836697 628.2956929969229 776.3713861652898 0 0 0 0 0 0 0 0 0.3807196863200844 PN{M(Oxidation (M))|F} 1.494 - 59 + NaN NaN 131435.7 NaN 9026 2959 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11988 55.948 NaN 651810 35 0 47499 0.261 + 4940 FAPDFFSLF 9 82 545.7655737961937 1089.5165946591874 2 546.7799682617188 MULTI HCD FTMS 0 0 0 11984 19789.5859375 0.23251002667231602 14 -0.3504905700683594 4 Unmodified _FAPDFFSLF_ REV__ENSG00000119737|ENST00000394705|GPR75 13.50788311687929 0.24365122550260465 2 {I|L}RC(Carbamidomethyl (C))DYAQ 7 -1 29.634 0 0 2.7199 0 0 165.07876784492345 0 165.07876784492345 0 7.353451488171245 0 0 0 0 0 0.3494850021680094 0 {I|L}RC(Carbamidomethyl (C))DYAQ 2.7199 - 472 NaN NaN 192814.6 NaN 9027 2959 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11989 55.951 NaN 154670 35 0 11696 0.261 + -1 VACEIEEL 8 61 481.72876752049046 NaN 0 481.728515625 PEAK HCD FTMS 0 0 0 11984 43174.9375 0.8372763027919351 -3 0.08977127075195312 5 Carbamidomethyl (C) _VAC(Carbamidomethyl (C))EIEEL_ REV__ENSG00000119844|ENST00000409933|AFTPH;REV__ENST00000498706.5_1_2:64778608-64806757:+|nuORF;REV__nc|ENSG00000119844|Q6ULP2-6|AFTPH;REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH;REV__nc|ENSG00000119844|Q6ULP2-8|AFTPH;REV__nc|ENSG00000119844|Q6ULP2-9|AFTPH 19.438996006549623 0.38500361301801034 2 EV 2 -1 14.776 0 0 1.5369 0 0 131.09770950615956 599.2300787960879 730.3277883022474 0 0 0 0 0 0.3807196863200844 0 0 0 EV 1.5369 - 39 + NaN NaN 113308.2 NaN 9028 2959 11984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11991 55.956 NaN 5843900 35 0 880560 0.327 + 2419 DPRNATSVCI 10 138 566.7740010513621 1131.5334491695241 2 566.77490234375 MULTI HCD FTMS 0 0 0 11990 3123031.25 0.06695469367215656 -5 0.13890838623046875 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 43.77239144664712 0.11267038882370725 2 PAP{M(Oxidation (M))|F}STSVSW 10 7 93.577 0 0 8.2699 0 0 54.03418406707585 0 54.03418406707585 0 61.896264056535045 0 0 0 2.9916440611282624 0 1.9124379954164592 0 PAP{M(Oxidation (M))|F}STSVSW 8.2699 - 17122 + NaN NaN 973741.2 NaN 9029 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11992 55.961 NaN 1439200 35 0 135730 0.262 + 18267 MPDVDLHL 8 87 478.23139562648873 954.4482383197775 2 478.2312927246094 MULTI HCD FTMS 0 0 0 11990 743570 0.6756374421920395 -5 0.13890838623046875 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 137.58523961978855 0.05160782114563498 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 71.737 0 0 7.5161 7.5161 88.015 0 0 0 3.296896906561031 3.296896906561031 3.296896906561031 3.296896906561031 0 2.305462187404089 0 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[H{I|L}][{M(Oxidation (M))|F}V]V[EP]D;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P][MT]H{I|L};[H{I|L}]D[DP][{M(Oxidation (M))|F}V]{I|L};[YG]GK{I|L}DCS{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};{I|L}[YT]QQCS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[CA]|SS}[YK]N{I|L} 7.5161;7.1706;5.3103;2.4271;2.1117;1.7695;1.0174;0.92564;0.81992;0.3906 +;+;-;-;-;-;-;-;-;- + 1158 NaN NaN 308328.2 NaN 9030 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11993 55.964 NaN 2158000 35 0 207500 0.261 -1 0 119 582.769221728906 1163.523890524612 2 582.769775390625 MULTI HCD FTMS 0 0 0 11990 941807.5625 0.09742183455282051 -5 0.13890838623046875 3 NaN NaN 2 ASVSTYVSW 9 -1 95.66 0 0 8.2216 0 0 165.06065057632162 0 165.06065057632162 0 49.11359110675761 0 0 0 2.9776296993281406 0 1.5044321917401078 0 ASVSTYVSW 8.2216 - 14666 + NaN NaN 413195.1 NaN 9031 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11994 55.967 NaN 910090 35 0 134990 0.264 + 15439 LPDKWQHDLF 10 68 433.55566425157747 1297.6451633549325 3 433.5557556152344 MULTI HCD FTMS 0 0 0 11990 380255.09375 0.5240324757971987 3 -0.09180831909179688 4 Unmodified _LPDKWQHDLF_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 37.771325159832564 0.16474695691370878 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 7 33.5 0 0 2.5816 0 0 906.3928089826187 0 906.3928089826187 0 -2.07280713621401 -2.07280713621401 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.5816 - 92 NaN NaN 243073.5 NaN 9032 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11995 55.971 NaN 2032800 35 0 193750 0.261 + 10015 IETHGMAVSW 10 128 573.7656391822765 1145.5167254313528 2 573.7644653320312 MULTI HCD FTMS 0 0 0 11990 558734.0625 0.08576314414275509 -6 0.16506576538085938 5 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 46.020951573049366 0.09315764076686055 2 {[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVSW 10 7 {[MS]|[{M(Oxidation (M))|F}A]} + + 74.704 2.993 1.3725 6.5214 6.5214 64.803 0 0 0 0 50.56668989742103 0 0 0 3.048455006504028 0 1.6619543704721593 0 {[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVSW 6.5214 - 12056 + NaN NaN 399448.4 NaN 9033 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11996 55.974 NaN 557610 35 0 136730 0.261 + 29349 TYPENWRAF 9 68 592.2803518491406 1182.5461507650812 2 592.280517578125 MULTI HCD FTMS 0 0 0 11990 181077.484375 0.5204242426855189 6 -0.14659881591796875 6 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 13.042465956692817 0.2476723265019929 2 R{[WN]|[YH]}[EP]V{M(Oxidation (M))|F} 7 6 24.481 0 0 2.0702 0 0 236.11587721992345 0 236.11587721992345 0 14.023269708257898 0 0 0 0.8494850021680094 0 0 0 R{[WN]|[YH]}[EP]V{M(Oxidation (M))|F} 2.0702 - 50 NaN NaN 172874.4 NaN 9034 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11997 55.977 NaN 362880 35 0 46515 0.261 -1 VMAPRTLLL 9 57 515.3098989499737 1028.6052449667473 2 515.3099365234375 MULTI HCD FTMS 0 0 0 11990 172004.65625 0.4655524216951705 6 -0.14659881591796875 7 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 20.41453444215458 0.18397929046831515 2 AD{I|L} 3 -1 33.188 0 0 3.2265 0 0 711.4650026216674 0 711.4650026216674 0 16.197887582883936 0 0 0 1 0 0 0 AD{I|L} 3.2265 - 38 NaN NaN 150726.7 NaN 9035 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11998 55.981 NaN 771450 35 0 78031 0.261 + 4738 EYSKYLQQAF 10 80 638.8142572023177 1275.6139614714352 2 638.814208984375 MULTI HCD FTMS 0 0 0 11990 267123.375 0.3829831161126027 -5 0.13890838623046875 8 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 139.5402146806729 6.74364846862459E-07 2 [YT]DKY{I|L}QQA{M(Oxidation (M))|F} 10 2 + 105.96 0 0 8.3065 8.3065 88.187 0 0 0 0.6911545104331083 15.026975159433533 0.6911545104331083 0.6911545104331083 0 2.7614393726401687 2 3.4802046884880937 0 [YT]DKY{I|L}QQA{M(Oxidation (M))|F};[YE]SKY{I|L}QQA{M(Oxidation (M))|F};[YT]DKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YT]DKY{I|L}[AG]QA{M(Oxidation (M))|F};[YE]SKY{I|L}[AG]QA{M(Oxidation (M))|F};[YE]SKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YT]DKY{I|L}[AG][AG]A{M(Oxidation (M))|F};[YE]SKY{I|L}[AG][AG]A{M(Oxidation (M))|F};[KS]YEY{I|L}QQA{M(Oxidation (M))|F};[KS]YEY{I|L}[AG]QA{M(Oxidation (M))|F} 8.3065;8.2523;7.588;7.588;7.5339;7.5339;6.8724;6.8182;6.5557;5.8373 -;+;-;-;-;-;-;-;-;- + 4568 NaN NaN 200970.7 NaN 9036 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 11999 55.984 NaN 444680 35 0 84702 0.263 + 30658 VPDPNVIKL 9 53 497.80024605701715 993.5859391808343 2 497.8001708984375 MULTI HCD FTMS 0 0 0 11990 150585.171875 0.21891919899448622 -5 0.13890838623046875 9 Unmodified _VPDPNVIKL_ ENSG00000157349|ENST00000288071|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B 43.981846655682396 0.04706587046877104 2 [VP]D[NP]V{I|L}K{I|L} 9 0 + 63.355 0 0 6.3764 6.3764 85.926 0 0 0 3.2390874094431865 11.36046240493748 3.2390874094431865 3.2390874094431865 0 1.9247425010840047 1.6989700043360187 0 0.3807196863200844 + + [VP]D[NP]V{I|L}K{I|L};[DP]V[NP]V{I|L}K{I|L};[VP]D[NP]{I|L}VK{I|L};[VP]D[QP]VVK{I|L};[VP]N[DP]V{I|L}K{I|L};[DP]V[NP]{I|L}VK{I|L};[DP]V[QP]VVK{I|L};[VP]N{I|L}[DP]VK{I|L};[VP]N{I|L}V[DP]K{I|L};[VP]N[DP]{I|L}VK{I|L} 6.3764;6.0504;5.393;5.2955;5.2672;5.067;4.9695;4.7125;4.6413;4.2838 +;-;-;-;-;-;-;-;-;- + 226 NaN NaN 154360 NaN 9037 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12000 55.987 NaN 173440 35 0 36848 0.261 -1 EPMDLSTVI 9 56 510.74950396315467 1019.4844549931094 2 510.74951171875 MULTI HCD FTMS 0 0 0 11990 109649.5703125 0.12894263647125603 10 -0.242523193359375 10 Oxidation (M) _EPM(Oxidation (M))DLSTVI_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 7.289230182591677 0.29575926068275815 2 [Y{I|L}]V[HM]V 6 -1 23.134 0 0 2.2692 0 0 0 274.084987447611 274.084987447611 -0.5777378552236456 0 -0.5777378552236456 0 0 0 1.5228787452803376 0 0 [Y{I|L}]V[HM]V 2.2692 - 39 NaN NaN 109112.2 NaN 9038 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12001 55.991 NaN 939740 35 0 136960 0.261 + 15759 LPFPKDASL 9 85 494.27919025973955 986.5438275862791 2 494.2795715332031 MULTI HCD FTMS 0 0 0 11990 240616.78125 0.18425273964466626 -5 0.13890838623046875 11 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 59.368380827593164 0.01846506874148156 2 {I|L}P{M(Oxidation (M))|F}P 4 5 59.029 0 0 5.9834 0 0 0 529.2633610557938 529.2633610557938 37.43017638764117 0 0 0 0 1.1861818737241734 1.5228787452803376 0 0 + {I|L}P{M(Oxidation (M))|F}P 5.9834 + + 270 + NaN NaN 228116.9 NaN 9039 2960 11990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12003 55.996 NaN 1290700 35 0 132110 0.327 + 6966 FPVRDGVVL 9 103 501.29256912307454 1000.5705853129491 2 501.2926940917969 MULTI HCD FTMS 0 0 0 12002 694414.125 0.8899913336870136 -2 0.059139251708984375 1 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 55.50274090549119 0.023872834264864425 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L} 9 0 + 51.154 0 0 5.1125 5.1125 83.666 0 0 0 15.226267659175392 13.037275116073332 13.037275116073332 2.730012720637376 0 1.305462187404089 1.5228787452803376 0.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QN]|[E{I|L}]|[KN]}{[QG]|[NA]}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GV{I|L}V;[Q{I|L}]E[RP]{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]{I|L}V;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{[QN]|[E{I|L}]|[KN]}{[QG]|[NA]}{I|L}V;[{M(Oxidation (M))|F}V]P[RD]GVV{I|L};[Q{I|L}]TY[HK]V{I|L};[Q{I|L}]E[RP]V{M(Oxidation (M))|F}{I|L} 5.1125;4.8396;4.3628;3.8095;3.5907;3.5367;3.0598;2.8422;2.8075;2.7589 +;-;-;-;-;-;-;-;-;- + 608 NaN NaN 278007 NaN 9040 2961 12002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12004 56 NaN 702860 35 0 64252 0.261 + 16886 LYFKWIFS 8 97 552.2980444145772 NaN 0 552.2799682617188 PEAK HCD FTMS 0 0 0 12002 10413.7490234375 0.40536286428351437 -1 0.0395660400390625 2 Unmodified _LYFKWIFS_ ENST00000395699.3_1_7:44922485-44922656:-|nuORF 14.581692164780916 0.38795613832665576 2 TVD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VT 7 7 29.411 0 0 2.6675 0 0 165.1178358122392 162.05608545474846 327.1739212669877 0 0 0 0 0 0 0 0.6237125054200234 0.8851518780601924 TVD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VT 2.6675 - 2321 + NaN NaN 193239.5 NaN 9041 2961 12002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12005 56.004 NaN 678110 35 0 116650 0.261 + 29350 TYPENWRAF 9 74 592.2803518491406 1182.5461507650812 2 592.2801513671875 MULTI HCD FTMS 0 0 0 12002 115279.1484375 0.3313170808070956 7 -0.16414260864257812 3 Unmodified _TYPENWRAF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 13.042465956692817 0.2476723265019929 2 V{M(Oxidation (M))|F} 2 8 22.206 0 0 1.8778 0 0 918.4343819430303 0 918.4343819430303 0 8.496075289514094 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 1.8778 - 103 NaN NaN 191863.7 NaN 9042 2961 12002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12007 56.008 NaN 1304800 35 0 89925 0.327 -1 SDASEQRVSMA 11 110 598.7647691631082 1195.5149853930163 2 598.7645874023438 MULTI HCD FTMS 0 0 0 12006 563961.375 0.46703014424373357 -4 0.11252212524414062 1 Oxidation (M) _SDASEQRVSM(Oxidation (M))A_ ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3;nc|ENSG00000081026|Q5TCQ9-2|MAGI3;nc|ENSG00000081026|Q5TCQ9-3|MAGI3 43.77239144664712 0.11265467298873516 2 SMTKYP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 8 -1 51.284 0 0 4.2897 0 0 236.0807098125286 0 236.0807098125286 0 18.075769466053075 0 0 0 1.0994850021680094 0 1.6351518780601921 0.2614393726401688 SMTKYP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4.2897 - 5322 + NaN NaN 306220.8 NaN 9043 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12008 56.013 NaN 666850 35 0 62227 0.261 + 17571 LYVMVNAKF 9 101 550.7940286424977 1099.5735043517952 2 550.794189453125 MULTI HCD FTMS 0 0 0 12006 214603.96875 0.7198090788685354 3 -0.081512451171875 2 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ ENSG00000074201|ENST00000525428|CLNS1A 107.99703571036002 0.003269392969029945 2 {I|L}YV{M(Oxidation (M))|F}VNAK{M(Oxidation (M))|F} 9 0 + 111.75 0 0 10.163 10.163 92.576 0 0 0 7.007046801327732 7.007046801327732 7.007046801327732 7.007046801327732 0 3.1989700043360187 2 0 0.8494850021680094 + + {I|L}YV{M(Oxidation (M))|F}VNAK{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}VNAK{M(Oxidation (M))|F};{I|L}YV{M(Oxidation (M))|F}VGGAK{M(Oxidation (M))|F};{I|L}YV{M(Oxidation (M))|F}VNKA{M(Oxidation (M))|F};{I|L}YV{M(Oxidation (M))|F}VGGKA{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}VGGAK{M(Oxidation (M))|F};{I|L}YV[KC]EAK{M(Oxidation (M))|F};{I|L}YVM[QT]AK{M(Oxidation (M))|F};{I|L}YV[KC]EKA{M(Oxidation (M))|F};{I|L}YVM[QT]KA{M(Oxidation (M))|F} 10.163;9.5262;9.326;8.8777;8.0403;8.0247;7.529;7.1832;6.2433;5.8975 +;+;-;-;-;-;-;-;-;- + 1351 + NaN NaN 191808.5 NaN 9044 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12009 56.016 NaN 568970 35 0 71382 0.261 + 8022 GGEWPKEQSW 10 80 602.274918908234 1202.5352848832679 2 602.2752075195312 MULTI HCD FTMS 0 0 0 12006 276595.96875 0.4628616512340595 -4 0.11252212524414062 3 Unmodified _GGEWPKEQSW_ REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF 14.405379775768559 0.37636895476610294 2 {[MS]|[{M(Oxidation (M))|F}A]}GSVYTSVSW 11 -1 {[MS]|[{M(Oxidation (M))|F}A]}G + + 70.844 13.345 4.8511 5.8912 5.8912 63.726 0 0 0 0 56.16495982548642 0 0 0 2.6549471895720984 0 0.7742275032520141 0 {[MS]|[{M(Oxidation (M))|F}A]}GSVYTSVSW 5.8912 - 896 + NaN NaN 184417.8 NaN 9045 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12010 56.02 NaN 1133300 35 0 131380 0.261 -1 YTCQAENGVGS 11 96 593.2451923260526 1184.475831718905 2 593.2299194335938 MULTI HCD FTMS 0 0 0 12006 68749.6171875 0.13192191390500094 32 -0.8537940979003906 4 Carbamidomethyl (C) _YTC(Carbamidomethyl (C))QAENGVGS_ ENSG00000088827|ENST00000344754|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;SIGLEC1|p.I319Sfs*12|1|0.19|ENSG00000088827|chr20:3703844-3703844|G/-|frameshift_variant 7.608950283845883 0.38555039536024605 2 [{I|L}V]{I|L}D 4 -1 36.821 0 0 3.1087 0 0 0 741.1878145807249 741.1878145807249 23.3263809458687 0 0 0 0 0.6643943297944485 1.6989700043360187 0 0 [{I|L}V]{I|L}D 3.1087 - 120 + NaN NaN 255736.6 NaN 9046 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12011 56.023 NaN 395860 35 0 47488 0.264 + 24552 RYLLFARQF 9 65 405.23292834402355 1212.6769556322706 3 405.5674133300781 MULTI HCD FTMS 0 0 0 12006 136130.765625 0.8456300385506329 3 -0.081512451171875 5 Unmodified _RYLLFARQF_ ENSG00000076003|ENST00000264156|MCM6 40.23920728925047 0.06424668180817725 2 A{M(Oxidation (M))|F}{I|L} 3 8 26.682 0 0 2.2003 0 0 449.23993490003824 429.2252153891587 878.4651502891969 0 0 0 0 0 1.3494850021680094 0 0 0 A{M(Oxidation (M))|F}{I|L} 2.2003 - 18 + NaN NaN 148554.2 NaN 9047 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12012 56.026 NaN 408290 35 0 62389 0.261 + 26580 SVSHPFSVN 9 56 487.2408006044261 972.4670482756522 2 487.2412414550781 MULTI HCD FTMS 0 0 0 12006 139832.859375 0.33153896890240864 -3 0.07195663452148438 6 Unmodified _SVSHPFSVN_ REV__nc|ENSG00000100987|Q9NZR4-2|VSX1;REV__nc|ENSG00000100987|Q9NZR4-3|VSX1 37.97399986684836 0.07464525285885698 2 STSVN 5 -1 61.186 0 0 6.2918 0 0 466.2322677980914 0 466.2322677980914 0 33.738350322034236 0 0 0 1.6989700043360187 0 0.9247425010840047 0 STSVN 6.2918 - 74 NaN NaN 141207.4 NaN 9048 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12013 56.03 NaN 347440 35 0 92349 0.261 + 20656 PFIKSQHELLF 11 56 453.58706362994377 1357.7393614900313 3 453.5869445800781 MULTI HCD FTMS 0 0 0 12006 156180.140625 0.9085613857759267 -1 0.0128173828125 7 Unmodified _PFIKSQHELLF_ ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH 20.871137199558856 0.2752315090543355 2 M{I|L}{I|L}{M(Oxidation (M))|F} 4 8 41.938 0 0 3.0888 0 0 835.4538441388687 0 835.4538441388687 0 19.746687923431097 0 0 0 1 0 0 0 M{I|L}{I|L}{M(Oxidation (M))|F} 3.0888 - 25 NaN NaN 151504.5 NaN 9049 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12014 56.033 NaN 137580 35 0 7337.3 0.261 -1 MPDGQFKDISL 11 61 633.8053872185288 1265.5962215038576 2 633.806640625 MULTI HCD FTMS 0 0 0 12006 35504.9609375 0.07366815912459182 -15 0.4143524169921875 8 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 7.945399516374404 0.3840748433199446 2 {I|L}S{I|L} 3 -1 28.812 0 0 2.2766 0 0 934.3817616193375 0 934.3817616193375 0 23.1259189508755 0 0 0 0.5 0 0 0 {I|L}S{I|L} 2.2766 + + 16 NaN NaN 116979.4 NaN 9050 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12015 56.036 NaN 1492900 35 0 285380 0.264 + 7839 FYRSTAPS 8 91 464.7300198544213 927.4454867756426 2 464.72979736328125 MULTI HCD FTMS 0 0 0 12006 60343.125 0.40054151450443054 -1 0.0128173828125 9 Unmodified _FYRSTAPS_ ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000116990|P12524-3|MYCL 78.14939416004806 0.020287975522436184 2 SVSTS{M(Oxidation (M))|F} 6 6 82.133 0 0 8.8558 0 0 0 316.1412447565063 316.1412447565063 44.66744000882805 0 0 0 0 1.805462187404089 1.3979400086720375 1.6989700043360187 0 SVSTS{M(Oxidation (M))|F} 8.8558 - 1838 + NaN NaN 315435.7 NaN 9051 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12016 56.04 NaN 342790 35 0 144650 0.261 + 6716 FPPSDEQL 8 56 466.7216919800219 931.4288310268438 2 466.7216796875 MULTI HCD FTMS 0 0 0 12006 81203.65625 0.8618703076924863 -4 0.11252212524414062 10 Unmodified _FPPSDEQL_ nc|ENSG00000211592|P01834|IGKC 20.453626601364224 0.4433031943603284 2 EQ{I|L} 3 5 35.049 0 0 3.763 0 0 543.2339344709 0 543.2339344709 0 14.983823498692598 0 0 0 0.8851518780601924 0 0 0 + EQ{I|L} 3.763 + + 99 NaN NaN 149249.2 NaN 9052 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12017 56.043 NaN 209780 35 0 20850 0.261 + 21211 PQQYMSALL 9 54 525.7678866652368 1049.5212203972735 2 526.2688598632812 MULTI HCD FTMS 0 0 0 12006 37091.890625 0.45418786411946466 12 -0.29811859130859375 11 Unmodified _PQQYMSALL_ ENSG00000096088|ENST00000373025|PGC 8.745405648335112 0.2847203663274469 2 SA{I|L}{I|L} 4 5 33.36 0 0 3.1786 0 0 647.2763539044937 0 647.2763539044937 0 30.885540741363187 0 0 0 0 0 0.3807196863200844 0 + SA{I|L}{I|L} 3.1786 + + 12 NaN NaN 122040.2 NaN 9053 2962 12006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12019 56.048 NaN 1044500 35 0 157530 0.327 + 1968 DAIRDAEIL 9 86 508.27461939355817 1014.5346858539164 2 508.2745666503906 MULTI HCD FTMS 0 0 0 12018 742968.3125 0.7282707616408675 3 -0.054790496826171875 1 Unmodified _DAIRDAEIL_ ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 71.70789743142352 0.008535567138151097 2 {[DA]|[EG]}{I|L}RDAE{I|L}{I|L} 9 0 + 83.739 0 0 8.2539 8.2539 89.587 0 0 0 16.837294113476204 16.478174818886373 16.478174818886373 4.259687322722812 0 2.305462187404089 1.3010299956639813 0.6861818737241735 0 + + {[DA]|[EG]}{I|L}RDAE{I|L}{I|L};{[DA]|[EG]}{I|L}REGE{I|L}{I|L};{[DA]|[EG]}{I|L}READ{I|L}{I|L};{[DA]|[EG]}{I|L}ERGE{I|L}{I|L};{[DA]|[EG]}ERVAE{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}ARDAE{I|L}{I|L};{[DA]|[EG]}ER{I|L}GE{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}AREGE{I|L}{I|L};{[DA]|[EG]}{I|L}ERAD{I|L}{I|L};{[DA]|[EG]}E{I|L}RGE{I|L}{I|L} 8.2539;7.8341;6.9451;6.6974;6.5584;6.5007;6.1385;6.0809;5.8084;5.6683 +;-;-;-;-;-;-;-;-;- + 1670 NaN NaN 269349.8 NaN 9054 2963 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12020 56.052 NaN 1151800 35 0 135410 0.261 + 16731 LYANMFERL 9 90 586.7917627978626 1171.568972662525 2 586.7919921875 MULTI HCD FTMS 0 0 0 12018 448605.21875 0.7770472655672338 -2 0.052242279052734375 2 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 148.26817274609934 1.0657023776783114E-05 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 111.43 0 0 9.511 9.511 93.8 0 0 0 101.69621752170278 8.256886463274284 8.256886463274284 9.208187539523749 0 2.7346368802282015 2 1.0387254899964358 0.6861818737241735 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}N{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]YM{[QG]|[NA]}ER{I|L};[Y{I|L}]Y[RD]N{[ES]|[DT]|[{I|L}C]}{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}[QA]A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]Y[C(Carbamidomethyl (C))R]E[VG]{I|L} 9.511;8.7251;8.4659;7.5722;6.5014;5.8853;5.0196;4.4676;4.3794;4.2727 +;-;+;-;-;-;-;-;-;- + 904 + NaN NaN 266208.6 NaN 9055 2963 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12021 56.056 NaN 1140700 35 0 147140 0.261 + 32163 VYSPHVLNL 9 100 521.2901521164162 1040.5657512996322 2 521.2899169921875 MULTI HCD FTMS 0 0 0 12018 396993.09375 0.3211309618302518 -5 0.151947021484375 3 Unmodified _VYSPHVLNL_ DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;ENSG00000079805|ENST00000389253|DNM2;ENSG00000106976|ENST00000372923|DNM1;ENSG00000197959|ENST00000627582|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;nc|ENSG00000106976|Q05193-2|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3 122.17920374332846 0.0010792739174387011 2 VYSPHV{I|L}N{I|L} 9 0 + 91.679 0 0 8.8105 8.8105 97.119 0 0 0 67.34305011473481 11.994011517474519 11.994011517474519 34.49478448944497 0 2.2346368802282015 2 0.4247425010840047 0.5242275032520141 + + VYSPHV{I|L}N{I|L};VY[{I|L}T][RN]{I|L}Y;VY[{I|L}T][YR]N{I|L};[YV][RN][{I|L}T]Y{I|L};[PS][YV]HV{I|L}N{I|L};[YV][RN][{I|L}T]{I|L}Y;[KA][R{M(Oxidation (M))|F}][RH]N{I|L};[PS]{[QV]|[N{I|L}]|[RA]|[KV]}P[HT]{I|L}Y;[R{M(Oxidation (M))|F}][KA][RH]N{I|L} 8.8105;5.4955;4.4829;3.1315;2.2291;2.2195;0.7722;0.75886;0.54189 +;-;-;-;-;-;-;-;- + 462 + NaN NaN 267949.1 NaN 9056 2963 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12022 56.059 NaN 180580 35 0 11875 0.261 -1 AMQRPCLSCP 10 63 618.2698268946499 1234.5251008560997 2 618.2702026367188 MULTI HCD FTMS 0 0 0 12018 145517.6875 0.7400712422706046 -2 0.052242279052734375 4 2 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))QRPC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))P_ ENST00000567874.5_1_16:90015852-90021630:+|nuORF 9.38312468134398 0.42334543440173333 2 G{[MS]|[{M(Oxidation (M))|F}A]}S 4 -1 23.188 0 0 1.8783 0 0 0 869.3775458536257 869.3775458536257 10.740312677277187 0 0 0 0 0.8494850021680094 0 0 0 G{[MS]|[{M(Oxidation (M))|F}A]}S 1.8783 - 36 + NaN NaN 109964.9 NaN 9057 2963 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12023 56.062 NaN 209620 35 0 16646 0.264 + 31319 VWPKKGTAVFW 11 61 440.24835272688586 1317.7232287808577 3 440.2486572265625 MULTI HCD FTMS 0 0 0 12018 119856.7734375 1 0 0 5 Unmodified _VWPKKGTAVFW_ ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-2|P4HA1;nc|ENSG00000122884|P13674-3|P4HA1 9.764250979337305 0.37200617284565546 2 {[RE]|[WV]}H 3 9 29.437 0 0 2.2339 0 0 0 892.4870586971264 892.4870586971264 7.983324797206279 0 0 0 0 0.5 1.3979400086720375 0 0 {[RE]|[WV]}H 2.2339 - 35 NaN NaN 134549 NaN 9058 2963 12018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12025 56.067 NaN 924660 35 0 103280 0.327 + 29697 VCSWSWRCQ 9 113 577.7474530577533 NaN 0 577.764404296875 PEAK HCD FTMS 0 0 0 12024 64877.828125 0.725503381210334 -2 0.058818817138671875 1 Unmodified _VCSWSWRCQ_ REV__ENST00000480925.1_1_9:100819070-100819196:+|nuORF 10.073929032068715 0.24642998803896465 2 Y{M(Oxidation (M))|F}E 3 -1 10.406 0 0 0.90215 0 0 156.06395293509075 555.2258394830686 711.2897924181593 0 0 0 0 0 0 0 0.2614393726401688 0 Y{M(Oxidation (M))|F}E 0.90215 - 174 + NaN NaN 246826.5 NaN 9059 2964 12024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12026 56.072 NaN 416140 35 0 57650 0.261 -1 SPCHIEMIL 9 73 529.7543956806188 1057.4942384280375 2 529.7540893554688 MULTI HCD FTMS 0 0 0 12024 167327.125 0.8099441067913413 -7 0.19760513305664062 2 Oxidation (M) _SPCHIEM(Oxidation (M))IL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 16.942295170755138 0.21397866736869717 2 C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}{I|L} 4 -1 33.047 0 0 3.1251 0 0 506.23848159004064 0 506.23848159004064 0 13.116202354569491 0 0 0 0.7614393726401688 0 0 0 C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}{I|L} 3.1251 - 340 NaN NaN 161728.8 NaN 9060 2964 12024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12027 56.075 NaN 392800 35 0 23565 0.261 + 34374 YPEGFEIHSM 10 96 605.2645103031524 1208.5144676731047 2 605.2626953125 MULTI HCD FTMS 0 0 0 12024 85794.3203125 0.47583082657508075 1 -0.022693634033203125 3 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 71.92227651296345 0.015307609975375192 2 YPEP 4 7 45.851 0 0 3.794 0 0 0 719.2697237604124 719.2697237604124 26.962214243856966 0 0 0 0 0.805462187404089 1.154901959985743 0.6694451763165201 0 YPEP 3.794 - 815 + NaN NaN 153410.9 NaN 9061 2964 12024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12028 56.078 NaN 406620 35 0 32899 0.261 + 34487 YPFKNDEVLP 10 63 611.3111839215513 1220.6078149099026 2 611.8126831054688 MULTI HCD FTMS 0 0 0 12024 52058.9453125 0.32689812542716984 -7 0.19760513305664062 4 Unmodified _YPFKNDEVLP_ ENSG00000163877|ENST00000296215|SNIP1 9.38312468134398 0.42334543440173333 2 {I|L}P 2 8 25.969 0 0 2.1276 0 0 992.4584829692446 0 992.4584829692446 0 15.511525224473813 0 0 0 0.5 0 0 0 + {I|L}P 2.1276 + + 28 NaN NaN 164977.8 NaN 9062 2964 12024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12029 56.082 NaN 280440 35 0 15049 0.264 + -1 FDCQPFGEGC 10 79 406.15150920949543 1215.4326982286864 3 406.48553466796875 MULTI HCD FTMS 0 0 0 12024 20929.966796875 0.16321204263390138 -3 0.07163619995117188 5 2 Carbamidomethyl (C) _FDC(Carbamidomethyl (C))QPFGEGC(Carbamidomethyl (C))_ REV__ENSG00000146839|ENST00000613979|ZAN;REV__nc|ENSG00000146839|Q9Y493-2|ZAN;REV__nc|ENSG00000146839|Q9Y493-3|ZAN;REV__nc|ENSG00000146839|Q9Y493-4|ZAN;REV__nc|ENSG00000146839|Q9Y493-5|ZAN;REV__nc|ENSG00000146839|Q9Y493-6|ZAN;REV__nc|ENSG00000146839|Q9Y493-7|ZAN;REV__ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant 2.0860074813731053 0.46426213543441425 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.0053 0 0 1050.3535946904035 0 1050.3535946904035 0 1.249387366082999 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0053 + + 33 + NaN NaN 140094.4 NaN 9063 2964 12024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12030 56.085 NaN 195950 35 0 8087.8 0.261 -1 0 42 648.6047973632812 NaN 0 648.6047973632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.54008 0 0 306.76283232246243 837.3866671197874 1144.1494994422499 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54008 - 2 + NaN NaN 106637.5 NaN 9064 2964 12024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12032 56.09 NaN 54002000 35 0 9216500 0.327 + 2420 DPRNATSVCI 10 129 566.7740010513621 1131.5334491695241 2 566.774169921875 MULTI HCD FTMS 0 0 0 12031 46643948 1 0 0 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 51.629811660486645 0.07186226796122157 2 PAP{M(Oxidation (M))|F}STSVSW 10 7 99.511 0 0 8.7944 0 0 54.03502582976632 0 54.03502582976632 0 50.380325230808154 0 0 0 3.079689690656103 0 2.4916440611282624 0 PAP{M(Oxidation (M))|F}STSVSW 8.7944 - 32353 + NaN NaN 912399.4 NaN 9065 2965 12031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12033 56.094 NaN 1021600 35 0 200830 0.261 + 25290 SAWHFPQGR 9 97 543.2685391997292 1084.5225254662582 2 543.2684326171875 MULTI HCD FTMS 0 0 0 12031 202187.4375 1 0 0 2 Unmodified _SAWHFPQGR_ ENST00000566166.1_1_19:7982552-7983971:+|nuORF 16.942295170755138 0.21397866736869717 2 CSVSPT{M(Oxidation (M))|F}[YQ] 9 8 32.435 0 0 2.9907 0 0 54.057535496889905 0 54.057535496889905 0 0.6766457621041226 0 0 0 0.5 0 0.5796896906561032 0 CSVSPT{M(Oxidation (M))|F}[YQ] 2.9907 - 1600 + NaN NaN 236777 NaN 9066 2965 12031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12034 56.098 NaN 426680 35 0 37816 0.261 + 2455 DQQFVEFVLP 10 63 611.3111839215513 1220.6078149099026 2 611.311279296875 MULTI HCD FTMS 0 0 0 12031 152113.203125 0.590698662736784 -8 0.22029876708984375 3 Unmodified _DQQFVEFVLP_ REV__ENSG00000205339|ENST00000379719|IPO7 8.155526934196011 0.43213520406898465 2 V{I|L}P 3 -1 28.812 0 0 2.3605 0 0 893.3896351544937 0 893.3896351544937 0 18.354706403678875 0 0 0 0.5 0 0 0 V{I|L}P 2.3605 + + 32 NaN NaN 157379.8 NaN 9067 2965 12031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12036 56.103 NaN 12142000 35 0 1148800 0.327 -1 0 131 582.769221728906 1163.523890524612 2 582.7693481445312 MULTI HCD FTMS 0 0 0 12035 9193288 0.950966012796728 1 -0.0310821533203125 1 NaN NaN 2 HSVSTYVSW 9 -1 101.17 0 0 8.6951 0 0 99.02963188024394 0 99.02963188024394 0 53.18926518994168 0 0 0 3.1791746928241125 0 1.8539171939081172 0 HSVSTYVSW 8.6951 - 20482 + NaN NaN 608363.2 NaN 9068 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12037 56.107 NaN 10515000 35 0 1005400 0.166 + 1866 CVSSFFAISW 10 139 573.7656391822765 1145.5167254313528 2 573.7636108398438 MULTI HCD FTMS 0 0 0 12035 6514850.5 1 0 0 2 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 46.020951573049366 0.09315764076686055 2 {[MS]|[{M(Oxidation (M))|F}A]}SVGMYVSW 10 7 + 93.515 0 0 8.1636 8.1636 88.88 0 0 0 1.5874840992032802 2.852506372855416 1.5874840992032802 2.852506372855416 0 3.0189301784845295 0 1.9960762528683704 0 {[MS]|[{M(Oxidation (M))|F}A]}SVGMYVSW;{[CT]|[{M(Oxidation (M))|F}G]}SVSTYVS{[CP]|[EA]};{[CT]|[{M(Oxidation (M))|F}G]}SVYTSVS{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}WYTSVSW;{[MS]|[{M(Oxidation (M))|F}A]}WSTYVSW;[YR]{M(Oxidation (M))|F}SDSVSW;{[CT]|[{M(Oxidation (M))|F}G]}SVYDG{I|L}S{[DS]|[MA]|[CV]|TT};{[CT]|[{M(Oxidation (M))|F}G]}SVSDYVS[VS];[YR]TGDYVSW;{[MS]|[{M(Oxidation (M))|F}A]}SVYTSVA{[DS]|[MA]|[CV]|TT} 8.1636;7.9145;7.9145;7.5176;7.5176;7.0891;7.0691;7.0346;7.0023;6.9989 -;-;-;-;-;-;-;-;-;- 37464 + NaN NaN 691486.4 NaN 9069 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12038 56.109 NaN 3125300 35 0 224570 0.261 + 17841 MHSSIEAVSSM 11 146 589.7606137033783 1177.5066744735566 2 589.7592163085938 MULTI HCD FTMS 0 0 0 12035 2208146.5 1 0 0 3 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 47.748688679222035 0.09066307675719942 2 {[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 + 75.653 0 0 6.4248 6.4248 86.674 0 0 0 12.429706623486354 -2.467001334874624 -2.467001334874624 4.924843744914597 0 2.4674165578762484 0.6989700043360187 1.8539171939081172 0 {[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SVYTSVS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SVS[YT]VS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SW{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SV[H{I|L}]SVS[EC];{[{M(Oxidation (M))|F}C]|[YS]}SV[TA]{M(Oxidation (M))|F}VS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SVS[H{I|L}]VS[EC];{[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVA{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SMSTS[YV]W 6.4248;6.0066;5.2618;5.2089;5.1492;5.0489;5.0465;4.9554;4.8992;4.7215 -;-;-;-;-;-;-;-;-;- 14715 NaN NaN 565872.7 NaN 9070 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12039 56.112 NaN 2403000 35 0 601060 0.261 + 29001 TYDYNFHSF 9 117 597.2485913785778 1192.4826298239554 2 597.2485961914062 MULTI HCD FTMS 0 0 0 12035 1459545 0.8330521143788951 1 -0.0310821533203125 4 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 218.19851028895775 7.751100994510294E-24 2 [YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 9 0 + 120.76 0 0 10.127 10.127 90.085 0 0 0 1.0615590457134942 1.0615590457134942 1.0615590457134942 1.0615590457134942 0 2.774227503252014 2 1.9291746928241125 1.416386562212267 + + [YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDNY{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDGGY{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{[WN]|[YH]}A{M(Oxidation (M))|F} 10.127;10.038;9.056;8.6681;8.5426;8.1669;8.1013;7.5741;6.5826;6.1012 +;+;-;-;-;-;-;-;-;- + 9400 NaN NaN 453426.1 NaN 9071 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12040 56.116 NaN 1577900 35 0 136650 0.263 + 18268 MPDVDLHL 8 100 478.23139562648873 954.4482383197775 2 478.2312927246094 MULTI HCD FTMS 0 0 0 12035 926024.875 0.8414232391721063 1 -0.0310821533203125 5 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 137.58523961978855 0.05160782114563498 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 67.974 0 0 7.1218 7.1218 86.892 0 0 0 2.2788725594920436 2.2788725594920436 2.2788725594920436 2.2788725594920436 0 2.2614393726401687 0 1.579689690656103 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}{I|L}H;[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[CT]|[{M(Oxidation (M))|F}G]}S{[MS]|[{M(Oxidation (M))|F}A]}{I|L}SN{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P][MT]H{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}SN{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[KG]E;{[CT]|[{M(Oxidation (M))|F}G]}S{[CP]|[EA]}[KT]C{I|L};[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[KG]E 7.1218;6.8831;5.5857;4.7182;2.1756;1.9955;1.8538;1.1338;0.96429;0.81197 +;+;-;-;-;-;-;-;-;- + 1311 NaN NaN 329560.8 NaN 9072 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12041 56.119 NaN 946710 35 0 92346 0.261 + 4739 EYSKYLQQAF 10 92 638.8142572023177 1275.6139614714352 2 638.814208984375 MULTI HCD FTMS 0 0 0 12035 622215.0625 0.8920891461799173 1 -0.0310821533203125 6 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 110.17927662590829 5.0958695730502786E-05 2 [YT]DKY{I|L}GAQA{M(Oxidation (M))|F} 11 4 + 111.97 0 0 8.7774 8.7774 89.305 0 0 0 2.015449934959719 16.575773191777927 2.015449934959719 1.8045606445813007 0 2.7614393726401687 2 2.9005149978319906 0 [YT]DKY{I|L}GAQA{M(Oxidation (M))|F};[YT]DKY{I|L}QQA{M(Oxidation (M))|F};[YE]SKY{I|L}GAQA{M(Oxidation (M))|F};[YE]SKY{I|L}QQA{M(Oxidation (M))|F};[YT]DKY{I|L}GA[AG]A{M(Oxidation (M))|F};[YT]DKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YE]SKY{I|L}GA[AG]A{M(Oxidation (M))|F};[YE]SKY{I|L}Q[AG]A{M(Oxidation (M))|F};[YT]D{I|L}[YK]GAQA{M(Oxidation (M))|F};[YT]D{I|L}[YK]QQA{M(Oxidation (M))|F} 8.7774;8.636;8.6194;8.478;8.0618;7.9175;7.9038;7.7595;7.0901;6.9487 -;-;-;+;-;-;-;-;-;- + 6744 NaN NaN 223236.8 NaN 9073 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12042 56.122 NaN 427930 35 0 44255 0.261 -1 MAGSFCWRML 10 84 609.2652824042909 1216.5160118753818 2 609.2648315429688 MULTI HCD FTMS 0 0 0 12035 155339.8125 0.8807232070689264 1 -0.0310821533203125 7 Oxidation (M) _M(Oxidation (M))AGSFCWRML_ nc|ENSG00000109685|O96028-2|NSD2 12.240655878213236 0.39661705172222156 2 SG{[CP]|[EA]} 4 -1 27.193 0 0 2.2353 0 0 854.3937412228412 0 854.3937412228412 0 11.73516269895728 0 0 0 1.25 0 0 0 SG{[CP]|[EA]} 2.2353 - 268 + NaN NaN 172371.4 NaN 9074 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12043 56.126 NaN 509160 35 0 29063 0.261 + 4985 FAYDGKDYL 9 96 546.255913087507 1090.497273241814 2 546.7574462890625 MULTI HCD FTMS 0 0 0 12035 104028.5390625 0.03859552287224027 40 -1.080322265625 8 Unmodified _FAYDGKDYL_ ENSG00000204592|ENST00000376630|HLA-E 31.26834338654808 0.10542797264966089 2 {I|L}RC(Carbamidomethyl (C))DYS{I|L} 7 7 39.856 0 0 3.6548 0 0 165.0787831037125 0 165.0787831037125 0 9.498474539733095 0 0 0 1.0451140161145327 0 0 0 {I|L}RC(Carbamidomethyl (C))DYS{I|L} 3.6548 - 1046 NaN NaN 170855.8 NaN 9075 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12044 56.129 NaN 729940 35 0 87107 0.261 + 31232 VVQESPSPFE 10 85 559.7694703591486 1117.5243877850971 2 560.775390625 MULTI HCD FTMS 0 0 0 12035 97970.421875 0.739624350377314 -1 0.01270294189453125 9 Unmodified _VVQESPSPFE_ ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1 9.38312468134398 0.42334543440173333 2 [YE][WP]SYE 7 6 23.192 0 0 2.0753 0 0 0 160.11519397811745 160.11519397811745 0.23341960302460052 0 0 0 0 0 1.0969100130080565 0.6237125054200234 0 [YE][WP]SYE 2.0753 - 261 NaN NaN 195386.9 NaN 9076 2966 12035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12046 56.134 NaN 1566400 35 0 241060 0.327 + 15760 LPFPKDASL 9 92 494.27919025973955 986.5438275862791 2 494.27911376953125 MULTI HCD FTMS 0 0 0 12045 968704.125 0.7417869527183664 2 -0.045379638671875 1 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 93.16586880292088 0.00444300900000894 2 [{I|L}P]{M(Oxidation (M))|F}PKDAS{I|L} 9 0 + 72.176 0 0 7.316 7.316 88.304 0 0 0 5 14.973024840566467 5 5 0 2.024227503252014 1.6989700043360187 0.6861818737241735 0 + + [{I|L}P]{M(Oxidation (M))|F}PKDAS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PKDAS{I|L};[{I|L}P]{M(Oxidation (M))|F}PTAAAS{I|L};[{I|L}P]{M(Oxidation (M))|F}[NS]S{I|L}P{I|L};[{I|L}P][NS]S{M(Oxidation (M))|F}{I|L}P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PTAAAS{I|L};[{I|L}P][NS]S{I|L}{M(Oxidation (M))|F}P{I|L};[{I|L}P][NS]{M(Oxidation (M))|F}S{I|L}P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NS]S{I|L}P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K[{I|L}P]DAS{I|L} 7.316;6.8092;5.899;5.6676;5.4659;5.3922;5.2428;5.1607;5.1607;5.1148 +;-;-;-;-;-;-;-;-;- + 1332 NaN NaN 322417 NaN 9077 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12047 56.138 NaN 941960 35 0 193110 0.261 + 30659 VPDPNVIKL 9 78 497.80024605701715 993.5859391808343 2 497.8004455566406 MULTI HCD FTMS 0 0 0 12045 535140.75 0.7779822068839313 2 -0.045379638671875 2 Unmodified _VPDPNVIKL_ ENSG00000157349|ENST00000288071|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B 65.47368725323818 0.010552856507075443 2 VPDPNV{I|L}K{I|L} 9 0 + 80.173 0 0 8.069 8.069 88.461 0 0 0 2.085521743960328 2.085521743960328 2.085521743960328 2.085521743960328 0 2.473197507588033 1.5228787452803376 0.3054621874040891 0.3054621874040891 + + VPDPNV{I|L}K{I|L};[VP]DNPV{I|L}K{I|L};[DP]VNPV{I|L}K{I|L};[VP]NDPV{I|L}K{I|L};[VP]DNP{I|L}VK{I|L};[VP]DN{I|L}PVK{I|L};[VP]DGGPV{I|L}K{I|L};[DP]VNP{I|L}VK{I|L};[DP]VN{I|L}PVK{I|L};[VP]NDP{I|L}VK{I|L} 8.069;7.8591;7.1326;6.8757;6.8757;6.7782;6.5492;6.1492;6.0517;5.8923 +;-;-;-;-;-;-;-;-;- + 935 + NaN NaN 226880.1 NaN 9078 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12048 56.142 NaN 983060 35 0 78040 0.261 + -1 MIDKVFGEF 9 106 551.2662454644266 1100.517937995653 2 551.2655639648438 MULTI HCD FTMS 0 0 0 12045 211352.375 0.6135361061650831 1 -0.026027679443359375 3 Oxidation (M) _M(Oxidation (M))IDKVFGEF_ REV__ENSG00000102245|ENST00000370629|CD40LG 15.847184025352803 0.2234401846867398 2 [Y{I|L}]V[{M(Oxidation (M))|F}V][C(Carbamidomethyl (C))D]VS 9 -1 + 30.598 0 0 2.7804 2.7804 80.449 0 0 0 1.8015587044558927 -2.097600681094306 -2.097600681094306 0.9813624419633378 0 0 1.5228787452803376 0.6549471895720985 0 [Y{I|L}]V[{M(Oxidation (M))|F}V][C(Carbamidomethyl (C))D]VS;[Y{I|L}]V[WY]V[DG]S;[Y{I|L}]V[WY][DG]VS;{[YD]|[{M(Oxidation (M))|F}M]}SN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AK{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}G[HT]{[QV]|[N{I|L}]|[RA]|[KV]}VCR;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[HT]{[ET]|[MV]}{I|L}QN;{[DS]|[MA]|[CV]|TT}S[HA]{[QV]|[N{I|L}]|[RA]|[KV]}VCR;{[YD]|[{M(Oxidation (M))|F}M]}SN[{M(Oxidation (M))|F}V]{I|L}P{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SGG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VNMNAK{M(Oxidation (M))|F} 2.7804;2.6912;2.5068;1.2359;0.92144;0.78468;0.70367;0.51272;0.39919;0.31048 -;-;-;-;-;-;-;-;-;- 750 NaN NaN 232384.7 NaN 9079 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12049 56.145 NaN 525490 35 0 33900 0.261 -1 MQSPKQVCV 9 82 559.7694703591486 1117.5243877850971 2 559.7681884765625 MULTI HCD FTMS 0 0 0 12045 109732.75 0.5428225552256507 1 -0.026027679443359375 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MQSPKQVC(Carbamidomethyl (C))V_ ENST00000334976.10_2_19:50989916-50990018:+|nuORF 9.38312468134398 0.279288223203164 2 SVS[DG] 5 -1 22.307 0 0 1.9961 0 0 654.30864150215 0 654.30864150215 0 4.515449934959715 0 0 0 0 0 0.6989700043360187 0 SVS[DG] 1.9961 - 643 NaN NaN 161116.4 NaN 9080 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12050 56.148 NaN 597970 35 0 128030 0.261 + 31525 VYGFVREAL 9 72 527.290378953345 1052.56620497349 2 527.290771484375 MULTI HCD FTMS 0 0 0 12045 193627.953125 0.35003414984125547 -5 0.12529754638671875 5 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 76.82478488871298 0.006879825292024087 2 VYG{M(Oxidation (M))|F}VREA{I|L} 9 0 + 94.703 0 0 8.9973 8.9973 90.862 0 0 0 5.097046968434142 5.097046968434142 5.097046968434142 5.097046968434142 0 2.9604093769761874 2 0.3494850021680094 0 + + VYG{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}RVEA{I|L};[YV]G{M(Oxidation (M))|F}R{[CP]|[EA]}V{I|L};[YV][R{M(Oxidation (M))|F}]GVEA{I|L};VY[R{M(Oxidation (M))|F}]GVEA{I|L};[YV][R{M(Oxidation (M))|F}]G{[CP]|[EA]}V{I|L};[YV][KP][RD]Y{I|L};[YV][KP][RD]{I|L}Y 8.9973;8.5131;7.66;5.9768;5.8568;5.3776;4.1737;4.0587;2.7904 +;+;-;-;-;-;-;-;- + 722 + NaN NaN 177917.1 NaN 9081 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12051 56.152 NaN 357130 35 0 34767 0.261 + 31062 VSYMCTFLF 9 63 555.7547069339042 1109.4948609346084 2 555.75244140625 MULTI HCD FTMS 0 0 0 12045 68353.1953125 0.6106557688840734 1 -0.026027679443359375 6 Unmodified _VSYMCTFLF_ ENST00000198767.10_1_16:15154396-15154894:-|nuORF 11.640296217721598 0.25978676193971967 2 VS 2 7 21.198 0 0 1.9106 0 0 0 920.3756115340203 920.3756115340203 6.593793813122062 0 0 0 0 0 0 0.5 0 + VS 1.9106 + + 70 + NaN NaN 142392.9 NaN 9082 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12052 56.155 NaN 274740 35 0 13534 0.264 -1 VFFYYCCC 8 69 406.82054510204756 NaN 0 406.8204345703125 PEAK HCD FTMS 0 0 0 12045 56312.8125 0.5562648167002613 1 -0.026027679443359375 7 3 Carbamidomethyl (C) _VFFYYC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))_ ENST00000463830.1_1_2:203948241-203949319:+|nuORF 1.844237919475145 0.38822285293237185 2 S 1 -1 6.9897 0 0 0.8612 0 0 70.2799929367139 651.2887667291624 721.5687596658763 0 0 0 0 0 0 0 0 0 S 0.8612 - 16 + NaN NaN 128088.8 NaN 9083 2967 12045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12054 56.16 NaN 990470 35 0 104540 0.327 + 6967 FPVRDGVVL 9 94 501.29256912307454 1000.5705853129491 2 501.2927551269531 MULTI HCD FTMS 0 0 0 12053 573668.25 0.7352381706109378 5 -0.12720870971679688 1 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 63.960520009940105 0.0120409805053046 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L} 9 0 + 58.06 0 0 5.8027 5.8027 86.022 0 0 0 19.51090597957851 37.248096566013864 19.51090597957851 5.929862658764264 0 1.305462187404089 1.5228787452803376 0.5994850021680094 0.5242275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RD]GVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[RV][DG]V{I|L};[{M(Oxidation (M))|F}V]P[RD]GVV{I|L};[{M(Oxidation (M))|F}V]P[RV][DG]V{I|L};[WR]{NN|[MP]|[D{I|L}]|[EV]}TVV{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}V[PS]P{M(Oxidation (M))|F}V{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}V[PS]{M(Oxidation (M))|F}PV{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}V[PS]PV{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}V[PS]PV{I|L}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}V{NN|[MP]|[D{I|L}]|[EV]}[W{I|L}]{I|L} 5.8027;5.2101;3.5993;3.0067;2.8862;2.6579;1.8133;1.6219;0.45224;0.015363 +;-;-;-;-;-;-;-;-;- + 465 NaN NaN 241887.5 NaN 9084 2968 12053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12055 56.164 NaN 773390 35 0 88990 0.261 + 3970 EQSGPRSAVSW 11 96 602.2925899943385 NaN 0 602.2750854492188 PEAK HCD FTMS 0 0 0 12053 37567.96484375 1 0 0 2 Unmodified _EQSGPRSAVSW_ REV__ENSG00000117155|ENST00000342203|SSX2IP;REV__nc|ENSG00000117155|Q9Y2D8-3|SSX2IP 15.248480904072842 0.2934134091661347 2 SV[YT]SVS 7 -1 23.861 0 0 1.9842 0 0 275.12617744119126 201.06675134830314 476.19292878949443 0 0 0 0 0 0 0 1.363982988912431 0 SV[YT]SVS 1.9842 - 490 + NaN NaN 222681.6 NaN 9085 2968 12053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12056 56.168 NaN 1441600 35 0 201970 0.261 + -1 MPTDAMSSGSW 11 102 593.2303666518355 1184.446180370471 2 593.23046875 MULTI HCD FTMS 0 0 0 12053 414566.8125 0.5917199146604778 3 -0.07155990600585938 3 Oxidation (M) _M(Oxidation (M))PTDAMSSGSW_ REV__ENSG00000197136|ENST00000355703|PCNX3;REV__nc|ENSG00000197136|Q9H6A9-2|PCNX3 8.155526934196011 0.3831532958467648 2 SW 2 -1 16.22 0 0 1.3694 0 0 893.317674705275 0 893.317674705275 0 2.3966290708609517 0 0 0 0.4247425010840047 0 0 0 SW 1.3694 + + 94 NaN NaN 312899.2 NaN 9086 2968 12053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12057 56.171 NaN 1196600 35 0 249680 0.261 + 1040 AYGHFSYEF 9 100 560.7409475636375 1119.467342194075 2 560.7409057617188 MULTI HCD FTMS 0 0 0 12053 605273 0.26595878839009324 -4 0.09250640869140625 4 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 117.59872219059416 0.0017018906413822257 2 AY{[HG]|PP}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 9 0 + 77.849 0 0 6.9541 6.9541 93.003 0 0 0 49.990123401892234 14.97331713462826 14.97331713462826 19.49884776691752 0 2.742992819099939 1.5228787452803376 1.0629529932484498 0 + + AY{[HG]|PP}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QG]|[NA]}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][HA]YE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SEY{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QG]|[NA]}{M(Oxidation (M))|F}SEY{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QG]|[NA]}S{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG][HA]EY{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 6.9541;5.2123;4.9434;4.9131;4.4067;4.4056;4.1378;4.1367;4.1075;3.5999 +;-;-;-;-;-;-;-;-;- + 1875 + NaN NaN 276645.8 NaN 9087 2968 12053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12058 56.174 NaN 439280 35 0 88509 0.261 + 5533 FLEGSNDAL 9 60 483.23253512331445 964.4505173134289 2 483.2326354980469 MULTI HCD FTMS 0 0 0 12053 199886.875 0.6680399872749911 -2 0.057109832763671875 5 Unmodified _FLEGSNDAL_ ENSG00000007314|ENST00000435607|SCN4A 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}[NS]DA{I|L} 6 3 45.763 0 0 4.745 0 0 299.14756972480626 0 299.14756972480626 0 28.773043837969325 0 0 0 1 0 0.7614393726401688 0.4247425010840047 {M(Oxidation (M))|F}[NS]DA{I|L} 4.745 - 80 NaN NaN 155366.1 NaN 9088 2968 12053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12060 56.179 NaN 368340 35 0 25297 0.327 + 18153 MPDGQFKDISL 11 73 633.8053872185288 1265.5962215038576 2 633.8057861328125 MULTI HCD FTMS 0 0 0 12059 167794.453125 0.3481515863317196 -9 0.22306060791015625 1 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 64.68765255105646 0.02110486602236596 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 68.977 0 0 5.4501 5.4501 86.381 0 0 0 4.981979378655879 54.99723271691022 4.981979378655879 8.066884185923662 0 2.579689690656103 0 1.1989700043360187 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};[DP]{M(Oxidation (M))|F}{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};[DP]{[QG]|[NA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};[DP]{M(Oxidation (M))|F}{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}VE;[DP]{[QG]|[NA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};[DP]{M(Oxidation (M))|F}{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}VE;[DP]{[QG]|[NA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}VE 5.4501;4.8127;3.8835;3.2591;2.6217;2.3086;1.6924;1.6712;0.74193 +;-;-;-;-;-;-;-;- + 293 NaN NaN 157183.6 NaN 9089 2969 12059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12061 56.183 NaN 403490 35 0 55839 0.263 + 26581 SVSHPFSVN 9 56 487.2408006044261 972.4670482756522 2 487.2411193847656 MULTI HCD FTMS 0 0 0 12059 196085.15625 0.4649112577026761 4 -0.10785675048828125 2 Unmodified _SVSHPFSVN_ REV__nc|ENSG00000100987|Q9NZR4-2|VSX1;REV__nc|ENSG00000100987|Q9NZR4-3|VSX1 30.636539890814138 0.10832830463492794 2 STSVN 5 -1 61.058 0 0 6.2786 0 0 466.23347670722814 0 466.23347670722814 0 42.336199910112455 0 0 0 1.6861818737241734 0 0.9247425010840047 0 STSVN 6.2786 - 173 NaN NaN 154040.1 NaN 9090 2969 12059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12062 56.187 NaN 517240 35 0 28774 0.261 + 33636 YIVYERGSD 9 93 551.2662454644266 1100.517937995653 2 550.7623901367188 MULTI HCD FTMS 0 0 0 12059 65835.3671875 0.25311540089747864 2 -0.05220794677734375 3 Unmodified _YIVYERGSD_ ENST00000479439.5_1_1:43830699-43831981:-|nuORF 12.531546534597751 0.2520865569484384 2 [Y{I|L}]V[WY]V[DG]S 9 4 + 29.159 0 0 2.6496 2.6496 86.194 0 0 0 5.971734040497342 4.2209021472700705 4.2209021472700705 12.503859178250778 0 0 2 0.3807196863200844 0 [Y{I|L}]V[WY]V[DG]S;[Y{I|L}]VC(Carbamidomethyl (C))[R{M(Oxidation (M))|F}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}QQVQN;[Y{I|L}]V[CG][R{M(Oxidation (M))|F}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}][RV]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[Q{I|L}][C(Carbamidomethyl (C))S][HV]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}[HT]MNN 2.6496;1.5134;1.4202;0.6718;0.55828;0.28229;0.069968 -;-;-;-;-;-;- 265 NaN NaN 158066.1 NaN 9091 2969 12059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12063 56.19 NaN 217100 35 0 13814 0.261 -1 VMAPRTLLL 9 59 515.3098989499737 1028.6052449667473 2 515.310302734375 MULTI HCD FTMS 0 0 0 12059 29289.974609375 0.0792770318436341 15 -0.395355224609375 4 Oxidation (M) _VM(Oxidation (M))APRTLLL_ ENSG00000206503|ENST00000376809|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;nc|ENSG00000206503|P04439-2|HLA-A 17.11289562659939 0.2125047172822487 2 AD{I|L} 3 -1 36.198 0 0 3.5191 0 0 711.4657132533678 0 711.4657132533678 0 10 0 0 0 1 0 0 0 AD{I|L} 3.5191 - 56 NaN NaN 117392.9 NaN 9092 2969 12059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12064 56.194 NaN 1399200 35 0 276720 0.261 + 7840 FYRSTAPS 8 106 464.7300198544213 927.4454867756426 2 465.23162841796875 MULTI HCD FTMS 0 0 0 12059 71236.7421875 0.7249561725366978 2 -0.05220794677734375 5 Unmodified _FYRSTAPS_ ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000116990|P12524-3|MYCL 78.14939416004806 0.020287975522436184 2 SVSTS{M(Oxidation (M))|F} 6 6 84.914 0 0 9.1557 0 0 0 316.1411226861938 316.1411226861938 43.74175720442146 0 0 0 0 1.8494850021680094 1.5228787452803376 1.6989700043360187 0 SVSTS{M(Oxidation (M))|F} 9.1557 - 1541 + NaN NaN 312571.6 NaN 9093 2969 12059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12066 56.199 NaN 1673100 35 0 290010 0.327 + 32164 VYSPHVLNL 9 110 521.2901521164162 1040.5657512996322 2 521.2900390625 MULTI HCD FTMS 0 0 0 12065 977497.125 0.7907054225362224 2 -0.052276611328125 1 Unmodified _VYSPHVLNL_ DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;ENSG00000079805|ENST00000389253|DNM2;ENSG00000106976|ENST00000372923|DNM1;ENSG00000197959|ENST00000627582|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;nc|ENSG00000106976|Q05193-2|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3 147.05914393524117 1.1935124485855994E-05 2 VYSPHV{I|L}N{I|L} 9 0 + 96.645 0 0 9.2877 9.2877 98.237 0 0 0 73.6711606200922 15.360980233036159 15.360980233036159 51.27426910580333 0 2.309894379144197 2 0.7134679910804405 0.8609243748081782 + + VYSPHV{I|L}N{I|L};VY[{I|L}T][YR]N{I|L};[PS][YV]HV{I|L}N{I|L};V[TP]{I|L}D[RP]P{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[HA]VN{I|L};{I|L}[PS]{I|L}D[RP]P{M(Oxidation (M))|F};[PS]{I|L}{I|L}D[RP]P{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[RP]P[PA]Y;{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[HA]VGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[RP][WE]{I|L} 9.2877;4.3602;2.1641;1.6137;1.4843;0.85325;0.73436;0.63373;0.59941;0.58975 +;-;-;-;-;-;-;-;-;- + 1163 + NaN NaN 336945.1 NaN 9094 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12067 56.203 NaN 871530 35 0 71039 0.261 + 14148 LAELHLSQW 9 102 548.7931644667352 1095.5717760002703 2 548.793212890625 MULTI HCD FTMS 0 0 0 12065 474268.125 0.5462022829058464 -4 0.09592437744140625 2 Unmodified _LAELHLSQW_ ENST00000590152.1_1_19:9267483-9267588:+|nuORF 29.081581746732265 0.1154664336125038 2 {I|L}TNW 4 7 61.74 0 0 5.6354 0 0 563.3067893947585 0 563.3067893947585 0 31.722900387074517 0 0 0 1.8494850021680094 0 0.805462187404089 0.3252574989159953 {I|L}TNW 5.6354 - 647 NaN NaN 219043.3 NaN 9095 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12068 56.207 NaN 820650 35 0 104390 0.261 + 17731 MDDHLRKEE 9 82 586.7746087927803 NaN 0 586.7913208007812 PEAK HCD FTMS 0 0 0 12065 12405.4912109375 1 0 0 3 Unmodified _MDDHLRKEE_ ENSG00000133393|ENST00000255759|CEP20 10.823927491677226 0.2427956001690155 2 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 6 8 39.558 0 0 3.3766 0 0 113.04839135431332 284.17219888331795 397.22059023763126 0 0 0 0 0 0 0 0.7302046884880937 0.3494850021680094 YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.3766 - 378 + NaN NaN 217808.6 NaN 9096 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12069 56.21 NaN 2010900 35 0 218140 0.264 + 15448 LPDLEGRTHIF 11 92 433.23469221825985 1296.6822472549795 3 433.23492431640625 MULTI HCD FTMS 0 0 0 12065 294216.625 0.29669669412262767 -4 0.09592437744140625 4 Unmodified _LPDLEGRTHIF_ ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 24.228606790798544 0.24597776642660932 2 {I|L}PYREA{M(Oxidation (M))|F}RV 9 8 64.43 0 0 4.9688 0 0 0 162.05600916080314 162.05600916080314 42.416440611282624 0 0 0 0 0.3807196863200844 1.3010299956639813 0.4247425010840047 0 {I|L}PYREA{M(Oxidation (M))|F}RV 4.9688 - 894 + NaN NaN 392143.4 NaN 9097 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12070 56.213 NaN 552540 35 0 48295 0.261 + 33962 YLTEQEDEQ 9 93 577.7474530577533 NaN 0 577.7654418945312 PEAK HCD FTMS 0 0 0 12065 31907.0078125 0.3568035910152979 3 -0.0883941650390625 5 Unmodified _YLTEQEDEQ_ BCORL1|p.P1681Qfs*20|1|0.89|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant;ENSG00000085185|ENST00000540052|BCORL1;nc|ENSG00000085185|Q5H9F3-1|BCORL1 6.723162845929126 0.26266733336404485 2 {I|L}EY 3 7 11.198 0 0 0.97079 0 0 262.99507593796903 482.2628072209824 745.2578831589515 0 0 0 0 0 0 0 0 0 {I|L}EY 0.97079 - 89 + NaN NaN 174906.5 NaN 9098 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12071 56.217 NaN 642830 35 0 49589 0.261 + 4561 EYLKVDAQF 9 104 556.7850059534619 1111.5554589737237 2 556.7844848632812 MULTI HCD FTMS 0 0 0 12065 96459.3046875 0.5167265374266257 1 -0.032745361328125 6 Unmodified _EYLKVDAQF_ ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant 136.39213081522345 0.00021731600835925866 2 [YE]{I|L}KVDAQ{M(Oxidation (M))|F} 9 0 + 85.756 0 0 7.7149 7.7149 94.758 0 0 0 42.577650888173395 16.478174818886373 16.478174818886373 23.69788758288393 0 1.7750722263572138 0.9208187539523752 0 1.7984550065040281 + + [YE]{I|L}KVDAQ{M(Oxidation (M))|F};[YE]{I|L}KVDA[AG]{M(Oxidation (M))|F};[YG]NTRRAQ{M(Oxidation (M))|F};[YG]SQRRAQ{M(Oxidation (M))|F};[YG]NTARRQ{M(Oxidation (M))|F};[YG]NTRRA[AG]{M(Oxidation (M))|F};[YG]GGTRRAQ{M(Oxidation (M))|F};[YG]NTRRA{M(Oxidation (M))|F}Q;[YE]{I|L}KV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[DS]|[MA]|[CV]|TT};{[DS]|[MA]|[CV]|TT}S{I|L}{I|L}V{[CT]|[{M(Oxidation (M))|F}G]}Q{M(Oxidation (M))|F} 7.7149;5.583;5.0047;4.509;4.2902;4.1763;4.1419;4.105;4.0556;3.8854 +;-;-;-;-;-;-;-;-;- + 3076 + NaN NaN 200953.6 NaN 9099 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12072 56.22 NaN 552190 35 0 67476 0.261 + 21119 PPDFRDLPE 9 85 543.2685391997292 1084.5225254662582 2 543.2850341796875 MULTI HCD FTMS 0 0 0 12065 76070.5703125 0.3762378674614737 5 -0.14076995849609375 7 Unmodified _PPDFRDLPE_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2 10.823927491677226 0.26684000660059787 2 {I|L}HQT{M(Oxidation (M))|F}[YQ] 7 9 34.737 0 0 3.2029 0 0 149.07645875460452 0 149.07645875460452 0 8.815147700969277 0 0 0 0 0 0 0 {I|L}HQT{M(Oxidation (M))|F}[YQ] 3.2029 - 543 + NaN NaN 186793.1 NaN 9100 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12073 56.223 NaN 1040200 35 0 188370 0.262 + 7841 FYRSTAPS 8 101 464.7300198544213 927.4454867756426 2 464.7298583984375 MULTI HCD FTMS 0 0 0 12065 43066.53125 0.28586410881649543 7 -0.18312835693359375 8 Unmodified _FYRSTAPS_ ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000116990|P12524-3|MYCL 58.678817012210395 0.07403930816997953 2 SVSTDR{M(Oxidation (M))|F} 7 6 80.226 0 0 8.6502 0 0 0 132.04525171451408 132.04525171451408 36.30867032767662 0 0 0 0 1.4247425010840047 1.3010299956639813 1.6549471895720984 0 SVSTDR{M(Oxidation (M))|F} 8.6502 - 1465 + NaN NaN 247660.3 NaN 9101 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12074 56.226 NaN 153370 35 0 9369.1 0.261 -1 0 39 614.9553305764833 NaN 0 614.7586669921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 2 A 1 -1 1.9897 0 0 0.16204 0 0 557.5599398621479 596.2865084283811 1153.846448290529 0 0 0 0 0 0 0 0 0 A 0.16204 - 2 + NaN NaN 122641.2 NaN 9102 2970 12065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12076 56.231 NaN 20241000 35 0 3569800 0.327 + 2421 DPRNATSVCI 10 105 566.7740010513621 1131.5334491695241 2 566.774169921875 MULTI HCD FTMS 0 0 0 12075 13931262 0.298672445136934 6 -0.15038299560546875 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 43.77239144664712 0.11267038882370725 2 SAP{M(Oxidation (M))|F}STSVSW 10 7 99.097 0 0 8.7577 0 0 64.03131453130489 0 64.03131453130489 0 57.15392579998254 0 0 0 3.0994850021680094 0 1.8996498648046138 0 SAP{M(Oxidation (M))|F}STSVSW 8.7577 - 7767 + NaN NaN 496308.6 NaN 9103 2971 12075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12077 56.236 NaN 352770 35 0 24687 0.261 + 34375 YPEGFEIHSM 10 84 605.2645103031524 1208.5144676731047 2 605.7543334960938 MULTI HCD FTMS 0 0 0 12075 60723.359375 0.5260650451845555 5 -0.12420272827148438 2 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 78.7280429016045 0.0072433801744089844 2 YPEP[WY]H 7 6 51.89 0 0 4.2937 0 0 0 233.0580996149047 233.0580996149047 24.31924686300333 0 0 0 0 1.2134679910804405 1.3010299956639813 0.7059771852360797 0 YPEP[WY]H 4.2937 - 867 + NaN NaN 133891 NaN 9104 2971 12075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12078 56.239 NaN 460400 35 0 64984 0.264 + 24184 RYFDVGLHNF 10 60 423.21217066169726 1266.6146825852918 3 423.2123107910156 MULTI HCD FTMS 0 0 0 12075 166335.171875 0.7037714469311378 -1 0.032745361328125 3 Unmodified _RYFDVGLHNF_ ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT 28.494509381512117 0.24525010509582015 2 VG[H{I|L}]N{M(Oxidation (M))|F} 6 4 41.159 0 0 3.2495 0 0 581.2606313693998 0 581.2606313693998 0 40.67410004652736 0 0 0 1.4247425010840047 0 0 0 + VG[H{I|L}]N{M(Oxidation (M))|F} 3.2495 + + 61 + NaN NaN 154459.7 NaN 9105 2971 12075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12079 56.243 NaN 170750 35 0 9959.8 0.261 -1 AMQRPCLSCP 10 58 618.2698268946499 1234.5251008560997 2 618.2696533203125 MULTI HCD FTMS 0 0 0 12075 64816.5546875 0.3296428700275951 6 -0.15038299560546875 4 2 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))QRPC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))P_ ENST00000567874.5_1_16:90015852-90021630:+|nuORF 3.2813086475875832 0.45793521633868084 2 YYD 3 -1 25.686 0 0 2.0807 0 0 0 790.3488062606497 790.3488062606497 7.727562184969372 0 0 0 0 0 2 0 0 YYD 2.0807 - 26 NaN NaN 118425.3 NaN 9106 2971 12075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12080 56.246 NaN 348490 35 0 53247 0.261 + 3321 EEIREAFRVF 10 65 648.3411785600931 1294.6678041869861 2 648.3411254882812 MULTI HCD FTMS 0 0 0 12075 64281.25 0.6356899418445685 -1 0.032745361328125 5 Unmodified _EEIREAFRVF_ CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENSG00000143933|ENST00000272298|CALM2;ENSG00000160014|ENST00000291295|CALM3;ENSG00000178363|ENST00000315238|CALML3;ENSG00000198668|ENST00000356978|CALM1;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF 37.07464296494664 0.1707926854601146 2 EE 2 8 21.198 0 0 1.6373 0 0 0 1033.5579388329243 1033.5579388329243 0.7660625688767198 0 0 0 0 0 0 0.5 0 + EE 1.6373 + + 66 + NaN NaN 148413.4 NaN 9107 2971 12075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12082 56.251 NaN 4851900 35 0 482980 0.327 -1 0 129 582.769221728906 1163.523890524612 2 582.7693481445312 MULTI HCD FTMS 0 0 0 12081 3287516.75 0.3400651318385715 7 -0.19642257690429688 1 NaN NaN 2 SVS[YT]VSW 8 -1 79.448 0 0 6.8283 0 0 236.07903914831633 0 236.07903914831633 0 35.04432191740108 0 0 0 2.7346368802282015 0 1.8737125054200234 0 SVS[YT]VSW 6.8283 - 14092 + NaN NaN 522711.3 NaN 9108 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12083 56.255 NaN 3454700 35 0 341030 0.26 + 1867 CVSSFFAISW 10 128 573.7656391822765 1145.5167254313528 2 573.763671875 MULTI HCD FTMS 0 0 0 12081 2020464 0.3101320590549238 6 -0.16037368774414062 2 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 54.773552608820026 0.0604291769046433 2 HSVSTYVSW 9 7 94.651 0 0 8.2628 0 0 81.03625739083493 0 81.03625739083493 0 56.555904068558924 0 0 0 2.9604093769761874 0 1.7614393726401687 0 HSVSTYVSW 8.2628 - 13959 + NaN NaN 621321.8 NaN 9109 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12084 56.259 NaN 1465800 35 0 108490 0.261 + 17842 MHSSIEAVSSM 11 116 589.7606137033783 1177.5066744735566 2 589.7590942382812 MULTI HCD FTMS 0 0 0 12081 954684.4375 0.4323465121086848 6 -0.16037368774414062 3 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 47.748688679222035 0.09066307675719942 2 {[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 + 61.231 0 0 5.2 5.2 87.927 0 0 0 0.26477549453245786 17.709789760267036 0.26477549453245786 9.240990266378617 0 2.110924374808178 0 1.6432502603108656 0 {[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}[YV]{[MG]|[TS]}SVS{[MS]|[{M(Oxidation (M))|F}A]};[HD]AVSV{M(Oxidation (M))|F}VS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SVS[YT]VS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SV[YT]WS{[MS]|[{M(Oxidation (M))|F}A]};{[MS]|[{M(Oxidation (M))|F}A]}SV[YT]SW{[MS]|[{M(Oxidation (M))|F}A]};{[CT]|[{M(Oxidation (M))|F}G]}TV[YT]SVS{[MS]|[{M(Oxidation (M))|F}A]};[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{[MG]|[TS]}SVS{[MS]|[{M(Oxidation (M))|F}A]};[HD]AVS[YT]VS{[CP]|[EA]} 5.2;4.4152;4.1754;4.1604;4.1363;4.042;3.9575;3.9478;3.936;3.7041 -;-;-;-;-;-;-;-;-;- 4925 NaN NaN 315903 NaN 9110 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12085 56.262 NaN 1320100 35 0 345620 0.261 + 29002 TYDYNFHSF 9 89 597.2485913785778 1192.4826298239554 2 597.248779296875 MULTI HCD FTMS 0 0 0 12081 836158.0625 0.4772468419408688 7 -0.19642257690429688 4 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 151.47984550603806 7.261867933578587E-06 2 TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 9 0 + 110.97 0 0 9.3054 9.3054 89.361 0 0 0 0.7291667139154043 0.7291667139154043 0.7291667139154043 0.7291667139154043 0 2.822682509756042 2 1.5114393726401687 0 + + TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{[WN]|[YH]}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYGG{[WN]|[YH]}A{M(Oxidation (M))|F} 9.3054;9.2443;8.5333;7.7162;7.6438;6.6916;6.1158;5.6495;5.0911;4.8773 +;+;-;-;-;-;-;-;-;- + 1854 + NaN NaN 306412.3 NaN 9111 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12086 56.266 NaN 1239000 35 0 112380 0.263 + 18269 MPDVDLHL 8 96 478.23139562648873 954.4482383197775 2 478.2313232421875 MULTI HCD FTMS 0 0 0 12081 681460.4375 0.6192022095398795 7 -0.19642257690429688 5 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 69.735 0 0 7.3063 7.3063 89.776 0 0 0 3.979400086720375 39.86275921353034 3.979400086720375 8.610469015915783 0 2.2614393726401687 0 1.579689690656103 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SQQ[{M(Oxidation (M))|F}V]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAAN[{M(Oxidation (M))|F}V]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[MG]|[TS]}{I|L}[KG]E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]N[{M(Oxidation (M))|F}V]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[TA]N[{M(Oxidation (M))|F}V]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[KG]E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{[CP]|[EA]}[KT]C{I|L} 7.3063;6.4042;3.841;2.6139;2.2929;2.2716;1.6033;1.5311;1.5098;1.4259 +;+;-;-;-;-;-;-;-;- + 2365 NaN NaN 285933.5 NaN 9112 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12087 56.269 NaN 451780 35 0 34335 0.261 + -1 MSSFISETVC 10 77 580.7541801168368 NaN 0 580.7542724609375 PEAK HCD FTMS 0 0 0 12081 274833.875 0.3825279485961394 6 -0.16037368774414062 6 Carbamidomethyl (C) _MSSFISETVC(Carbamidomethyl (C))_ REV__ENSG00000171914|ENST00000636159|TLN2 19.256988751693697 0.2866536677172102 2 QSVSR[QP]D 8 -1 36.592 0 0 3.1558 0 0 89.9984898510291 169.0402010553344 259.0386909063635 0 0 0 0 0 0.8494850021680094 0 0.6861818737241735 0 QSVSR[QP]D 3.1558 - 229 + NaN NaN 161963.6 NaN 9113 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12088 56.272 NaN 422230 35 0 48325 0.261 + 34488 YPFKNDEVLP 10 58 611.3111839215513 1220.6078149099026 2 611.3108520507812 MULTI HCD FTMS 0 0 0 12081 221700.890625 0.8609273681004902 -1 0.01953125 7 Unmodified _YPFKNDEVLP_ ENSG00000163877|ENST00000296215|SNIP1 18.373094154950223 0.33925629317698053 2 EV{I|L}P 4 6 36.23 0 0 2.9682 0 0 764.3514881818375 0 764.3514881818375 0 21.281446971601312 0 0 0 0.5 0 0.3807196863200844 0 + EV{I|L}P 2.9682 + + 15 NaN NaN 155995.8 NaN 9114 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12089 56.275 NaN 548930 35 0 62671 0.261 -1 SPCHIEMIL 9 69 529.7543956806188 1057.4942384280375 2 529.75390625 MULTI HCD FTMS 0 0 0 12081 128359.265625 0.6213208452905239 1 -0.0361175537109375 8 Oxidation (M) _SPCHIEM(Oxidation (M))IL_ ENSG00000265681|ENST00000580261|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;nc|ENSG00000265681|P18621-3|RPL17 28.486842064014134 0.11819662193267319 2 {I|L}{M(Oxidation (M))|F}E{[CA]|SS}VV{M(Oxidation (M))|F} 8 -1 49.73 0 0 4.7026 0 0 131.09657527379858 0 131.09657527379858 0 30.088643834802156 0 0 0 0.805462187404089 0 0.6549471895720984 0 {I|L}{M(Oxidation (M))|F}E{[CA]|SS}VV{M(Oxidation (M))|F} 4.7026 - 286 + NaN NaN 185642.2 NaN 9115 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12090 56.279 NaN 945690 35 0 127080 0.261 + 15657 LPEGIRPGTVL 11 102 576.3427588804766 1150.670964827753 2 576.3427734375 MULTI HCD FTMS 0 0 0 12081 316322.625 0.9379867179327368 -1 0.01953125 9 Unmodified _LPEGIRPGTVL_ ENSG00000178934|ENST00000314980|LGALS7B;ENSG00000205076|ENST00000378626|LGALS7 94.90867108109511 0.013953977517728908 2 {I|L}PEG{I|L}R 6 5 79.641 0 0 6.9213 0 0 0 482.26203016258006 482.26203016258006 38.752706053630206 0 0 0 0 1.8494850021680094 1.3010299956639813 0.6989700043360187 0 + {I|L}PEG{I|L}R 6.9213 + + 2269 + NaN NaN 245496.9 NaN 9116 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12091 56.282 NaN 209720 35 0 14762 0.261 + 4740 EYSKYLQQAF 10 54 638.8142572023177 1275.6139614714352 2 638.8140869140625 MULTI HCD FTMS 0 0 0 12081 135569.640625 0.19437042309318006 7 -0.19642257690429688 10 Unmodified _EYSKYLQQAF_ ENSG00000162702|ENST00000367353|ZNF281;nc|ENSG00000162702|Q9Y2X9-2|ZNF281 43.476825903602695 0.11523527286127076 2 E[Y{I|L}]QQA{M(Oxidation (M))|F} 7 3 60.098 0 0 4.7113 0 0 378.19233901191564 0 378.19233901191564 0 43.900472848224226 0 0 0 1.8494850021680094 0 2.305462187404089 0 E[Y{I|L}]QQA{M(Oxidation (M))|F} 4.7113 - 241 NaN NaN 133909.9 NaN 9117 2972 12081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12093 56.287 NaN 802800 35 0 119340 0.327 + 30660 VPDPNVIKL 9 74 497.80024605701715 993.5859391808343 2 497.8002624511719 MULTI HCD FTMS 0 0 0 12092 282028.875 0.4100107244262232 8 -0.20246124267578125 1 Unmodified _VPDPNVIKL_ ENSG00000157349|ENST00000288071|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B 65.47368725323818 0.010552856507075443 2 VPDNPV{I|L}K{I|L} 9 2 + 77.532 0 0 7.8032 7.8032 87.411 0 0 0 0.7029645264523339 0.7029645264523339 0.7029645264523339 0.7029645264523339 0 2.723197507588033 1.3979400086720375 0 0.28872548999643577 VPDNPV{I|L}K{I|L};[VP]DNPV{I|L}K{I|L};[DP]VNPV{I|L}K{I|L};[VP]DNP{I|L}VK{I|L};[VP]DGGPV{I|L}K{I|L};[DP]VNP{I|L}VK{I|L};[DP]VGGPV{I|L}K{I|L};[VP]DGGP{I|L}VK{I|L};[DP]VGGP{I|L}VK{I|L};VPDNP{I|L}KV{I|L} 7.8032;7.7325;7.1619;6.7491;6.4784;6.1785;5.9078;5.4949;4.9243;4.4148 -;-;-;-;-;-;-;-;-;- 384 + NaN NaN 210557.5 NaN 9118 2973 12092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12094 56.291 NaN 2406500 35 0 267380 0.261 + 21112 PNSTVVKAAAC 11 104 530.7753517664173 NaN 0 530.7928466796875 PEAK HCD FTMS 0 0 0 12092 70768.4921875 0.7886754863330809 -1 0.0361175537109375 2 Unmodified _PNSTVVKAAAC_ REV__ENSG00000237651|ENST00000432605|C2orf74 18.1463463914782 0.2709046264062343 2 V{M(Oxidation (M))|F}ERVS 6 -1 33.236 0 0 3.1369 0 0 131.05989787885602 208.0726717584594 339.13256963731544 0 0 0 0 0 0 0 1.2312958898387063 1.3737125054200234 V{M(Oxidation (M))|F}ERVS 3.1369 - 672 + NaN NaN 469448.7 NaN 9119 2973 12092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12095 56.295 NaN 309040 35 0 39644 0.261 + 15761 LPFPKDASL 9 60 494.27919025973955 986.5438275862791 2 494.27923583984375 MULTI HCD FTMS 0 0 0 12092 132724.109375 0.10163372912811784 8 -0.20246124267578125 3 Unmodified _LPFPKDASL_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89;nc|nan|Q6UWU4-3|C6orf89 51.41523569358685 0.02959097413485123 2 {I|L}P{M(Oxidation (M))|F}P 4 5 56.414 0 0 5.7184 0 0 0 529.266976255109 529.266976255109 32.69730855242134 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 + {I|L}P{M(Oxidation (M))|F}P 5.7184 + + 99 + NaN NaN 146528.3 NaN 9120 2973 12092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12096 56.298 NaN 323940 35 0 67553 0.261 + 15373 LPDFERESL 9 59 553.280266682521 1104.5459804318418 2 553.2802124023438 MULTI HCD FTMS 0 0 0 12092 132264.640625 0.7973721470419817 1 -0.01958465576171875 4 Unmodified _LPDFERESL_ ENSG00000103657|ENST00000443617|HERC1;ENST00000559886.1_1_15:64045105-64067822:-|nuORF;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant 28.494509381512117 0.11816142465008336 2 {I|L}PD{M(Oxidation (M))|F}E[Q{I|L}]P{M(Oxidation (M))|F} 9 4 + 73.58 0 0 6.6616 6.6616 93.899 0 0 0 57.382287586051106 1.8661302113560652 1.8661302113560652 39.48970004336019 0 1 1.3010299956639813 0.4247425010840047 0.25 {I|L}PD{M(Oxidation (M))|F}E[Q{I|L}]P{M(Oxidation (M))|F};{I|L}[KC]QPG{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F};{I|L}[KC]QP{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{M(Oxidation (M))|F};{[SA]|[TG]}[WK]PG{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F};{[SA]|[TG]}[VS]QE[Q{I|L}]P{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}{I|L};{[SA]|[TG]}[WK]P{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{M(Oxidation (M))|F} 6.6616;3.0864;2.495;1.1637;0.95805;0.89509;0.57229 -;-;-;-;-;-;- 325 + NaN NaN 136801.9 NaN 9121 2973 12092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12097 56.302 NaN 157100 35 0 35646 0.262 + 31320 VWPKKGTAVFW 11 59 440.24835272688586 1317.7232287808577 3 440.2557678222656 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VWPKKGTAVFW_ ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-2|P4HA1;nc|ENSG00000122884|P13674-3|P4HA1 5.868138319507137 0.39318500527288264 2 {[RE]|[WV]}H 3 9 29.181 0 0 2.2145 0 0 0 892.4845867732982 892.4845867732982 8.696662315049934 0 0 0 0 0.5 1.5228787452803376 0 0 {[RE]|[WV]}H 2.2145 - 25 NaN NaN 110384.6 NaN 9122 2973 12092 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12099 56.307 NaN 2374000 35 0 589750 0.327 + 1041 AYGHFSYEF 9 90 560.7409475636375 1119.467342194075 2 560.7410888671875 MULTI HCD FTMS 0 0 0 12098 1871983 0.8225549967813728 2 -0.048969268798828125 1 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 170.55093314911917 3.526520053928E-09 2 AYGH{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 9 0 + 95.14 0 0 8.4986 8.4986 95.292 0 0 0 43.73478343784525 16.478174818886373 16.478174818886373 17.04628427264403 0 2.6677353201839438 1.5228787452803376 1.8441876774005248 0 + + AYGH{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{M(Oxidation (M))|F}SGH{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GYHAYE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[SG]{M(Oxidation (M))|F}SYE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GYHAEY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GYHAY{M(Oxidation (M))|F}E;{[{M(Oxidation (M))|F}H]|[RQ]}[YQ]SYE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}YAYE{M(Oxidation (M))|F};{[QG]|[NA]}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}SEY{M(Oxidation (M))|F} 8.4986;6.9759;6.1469;5.4891;5.4293;5.2741;5.1117;4.7401;4.6367;4.6163 +;-;-;-;-;-;-;-;-;- + 4403 + NaN NaN 462525.1 NaN 9123 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12100 56.311 NaN 760510 35 0 171380 0.261 + 31526 VYGFVREAL 9 74 527.290378953345 1052.56620497349 2 527.2901000976562 MULTI HCD FTMS 0 0 0 12098 363091.375 0.6563844667653406 2 -0.048969268798828125 2 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 96.36657018975838 0.004359138328518304 2 VYG{M(Oxidation (M))|F}VREA{I|L} 9 0 + 103.97 0 0 9.8775 9.8775 96.186 0 0 0 77.76979068265724 9.009461452434238 9.009461452434238 14.744237387763093 0 2.9291746928241125 2 0.9604093769761874 0 + + VYG{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}VREA{I|L};[YV]G{M(Oxidation (M))|F}RVEA{I|L};VY[R{M(Oxidation (M))|F}]GVEA{I|L};[YV]G{M(Oxidation (M))|F}VR[DV]V;[YV][R{M(Oxidation (M))|F}]GVEA{I|L};[YV]G{M(Oxidation (M))|F}R{[CP]|[EA]}V{I|L};[YV]G{M(Oxidation (M))|F}RV[DV]V;[YV]G{M(Oxidation (M))|F}R{[CP]|[EA]}{I|L}V;[YV][R{M(Oxidation (M))|F}]G{[CP]|[EA]}V{I|L} 9.8775;8.4768;7.8344;6.3105;6.0906;6.0313;6.0203;5.4483;4.9193;4.2171 +;+;-;-;-;-;-;-;-;- + 929 + NaN NaN 201995.8 NaN 9124 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12101 56.315 NaN 791420 35 0 106700 0.261 + 22266 QPDNIKALF 9 95 523.2877871369421 1044.5610213406842 2 523.28759765625 MULTI HCD FTMS 0 0 0 12098 445668.40625 0.9296456504643343 -4 0.10797882080078125 3 Unmodified _QPDNIKALF_ ENSG00000105701|ENST00000608443|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318-3|FKBP8;nc|ENSG00000105701|Q14318|FKBP8 37.97399986684836 0.07464525285885698 2 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F} 9 2 + 39.536 0 0 3.7849 3.7849 82.525 0 0 0 9.843050114734815 10.603255265556307 9.843050114734815 4.259687322722812 0 0.3494850021680094 0 0 0 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DN{I|L}KA{I|L}{M(Oxidation (M))|F};[NP]EGG{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DGG{I|L}KA{I|L}{M(Oxidation (M))|F};[KA]PA[VG][DG]A{I|L}{M(Oxidation (M))|F};[NP]EN{I|L}K{M(Oxidation (M))|F}[{I|L}A];[QP]DN{I|L}K{M(Oxidation (M))|F}[{I|L}A];[NP]EGG{I|L}K{M(Oxidation (M))|F}[{I|L}A] 3.7849;3.3771;2.9034;2.4956;1.8717;1.1985;0.79071;0.31697 -;+;-;-;-;-;-;- + 783 + NaN NaN 214342.7 NaN 9125 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12102 56.318 NaN 491510 35 0 47279 0.261 + 6968 FPVRDGVVL 9 74 501.29256912307454 1000.5705853129491 2 501.29254150390625 MULTI HCD FTMS 0 0 0 12098 276326.625 0.3541522164702241 11 -0.3040428161621094 4 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 26.268140514670165 0.13340543277302316 2 {[TV]|[{I|L}S]}[WE][RV]V{I|L} 8 5 + 33.874 0 0 3.3855 3.3855 88.933 0 0 0 2.6760624017703094 10.469837217489513 2.6760624017703094 33.873949984654246 0 0.5 2 0 0 {[TV]|[{I|L}S]}[WE][RV]V{I|L} 3.3855 - 136 NaN NaN 158364.3 NaN 9126 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12103 56.321 NaN 354860 35 0 30440 0.261 + 3766 ENWHVYNEI 9 72 602.274918908234 1202.5352848832679 2 602.2752685546875 MULTI HCD FTMS 0 0 0 12098 113392.359375 0.18975321634234188 8 -0.21561431884765625 5 Unmodified _ENWHVYNEI_ REV__ENSG00000131437|ENST00000403231|KIF3A;REV__ENST00000487055.1_1_5:132036305-132039285:-|nuORF;REV__nc|ENSG00000131437|Q9Y496|KIF3A 10.823927491677226 0.26684000660059787 2 YSSW 4 -1 37.977 0 0 3.1581 0 0 661.3244496076187 0 661.3244496076187 0 9.789784572998173 0 0 0 1.2059771852360797 0 0 0 YSSW 3.1581 - 155 NaN NaN 151063.4 NaN 9127 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12104 56.324 NaN 223780 35 0 41331 0.263 + 5534 FLEGSNDAL 9 58 483.23253512331445 964.4505173134289 2 483.23236083984375 MULTI HCD FTMS 0 0 0 12098 131948.453125 0.4409836461077285 4 -0.10467147827148438 6 Unmodified _FLEGSNDAL_ ENSG00000007314|ENST00000435607|SCN4A 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}DA{I|L} 4 5 44.68 0 0 4.6327 0 0 500.22351012459035 0 500.22351012459035 0 27.690775249321078 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {M(Oxidation (M))|F}DA{I|L} 4.6327 - 24 NaN NaN 118025.3 NaN 9128 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12105 56.328 NaN 227980 35 0 16101 0.261 + 29393 TYQLGFHSI 9 67 533.2716439380696 1064.528734942939 2 533.2717895507812 MULTI HCD FTMS 0 0 0 12098 70553.453125 0.6344333391103769 1 -0.0327911376953125 7 Unmodified _TYQLGFHSI_ ENSG00000142507|ENST00000270586|PSMB6 53.40400417844725 0.026808823219830042 2 [YT]Q{I|L}G{M(Oxidation (M))|F} 6 3 65.635 0 0 6.1656 0 0 0 352.1627291315063 352.1627291315063 58.187587626244124 0 0 0 0 1.774227503252014 2 0 0.4247425010840047 + [YT]Q{I|L}G{M(Oxidation (M))|F} 6.1656 + + 147 + NaN NaN 126888.7 NaN 9129 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12106 56.331 NaN 481860 35 0 35819 0.261 + 35018 YTFEQECHE 9 73 593.2303666518355 1184.446180370471 2 593.2310180664062 MULTI HCD FTMS 0 0 0 12098 81202.609375 0.11590218908220762 9 -0.24172592163085938 8 Unmodified _YTFEQECHE_ REV__ENSG00000152910|ENST00000611870|CNTNAP4;REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 2.0597508629832335 0.3354026079994024 2 D{I|L}{[HG]|PP} 4 -1 13.188 0 0 1.1134 0 0 744.2116566388687 0 744.2116566388687 0 6.197887582883936 0 0 0 0 0 0 0 D{I|L}{[HG]|PP} 1.1134 - 24 NaN NaN 180467.5 NaN 9130 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12107 56.334 NaN 539870 35 0 56404 0.262 + 16154 LPVALQTRL 9 73 505.8215810429122 1009.6286091526244 2 505.82135009765625 MULTI HCD FTMS 0 0 0 12098 136287.109375 0.43577322540957275 -4 0.10797882080078125 9 Unmodified _LPVALQTRL_ ENSG00000102103|ENST00000447146|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1 43.981846655682396 0.04706587046877104 2 {I|L}PVA{I|L}QTR{I|L} 9 0 + 89.563 0 0 8.8709 8.8709 93.209 0 0 0 69.89700043360187 6.127042801912879 6.127042801912879 9.208187539523749 0 2.274227503252014 1.6989700043360187 0.4247425010840047 0 + + {I|L}PVA{I|L}QTR{I|L};{I|L}PVA{I|L}[AG]TR{I|L} 8.8709;7.9588 +;- + 135 + NaN NaN 186711 NaN 9131 2974 12098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12109 56.339 NaN 794150 35 0 57449 0.327 + 18154 MPDGQFKDISL 11 99 633.8053872185288 1265.5962215038576 2 633.805419921875 MULTI HCD FTMS 0 0 0 12108 384027.84375 0.7968076447527815 -3 0.08849334716796875 1 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 94.80100141643854 0.013841973204107516 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 83.845 0 0 6.6249 6.6249 91.622 0 0 0 7.378497665760321 55.64034354457674 7.378497665760321 14.203555389302522 0 2.7753187046026264 0 2.2440840204505514 0.3252574989159953 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KDS{I|L}{I|L};{M(Oxidation (M))|F}PD{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{M(Oxidation (M))|F}P[NG]E{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{M(Oxidation (M))|F}P[NG]{I|L}[YQ]D{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}VE;{M(Oxidation (M))|F}P[NG]{I|L}{M(Oxidation (M))|F}[SG]D{I|L}S{I|L};{M(Oxidation (M))|F}P[CS]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KD{I|L}S{I|L};{[TV]|[{I|L}S]}[{M(Oxidation (M))|F}V]K{M(Oxidation (M))|F}{[QG]|[NA]}DPE 6.6249;5.5026;5.1228;4.7872;4.0579;3.2044;3.1075;2.9729;2.7151;1.7452 +;-;+;-;-;-;-;-;-;- + 918 NaN NaN 223503.8 NaN 9132 2975 12108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12110 56.344 NaN 244470 35 0 15115 0.261 + 34376 YPEGFEIHSM 10 75 605.2645103031524 1208.5144676731047 2 605.26611328125 MULTI HCD FTMS 0 0 0 12108 67986.796875 0.37706707897900354 12 -0.31621551513671875 2 Unmodified _YPEGFEIHSM_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 62.57269311338072 0.03206542651389879 2 YPEP{[{M(Oxidation (M))|F}C]|[YS]}VH{[MS]|[{M(Oxidation (M))|F}A]} 10 3 + 54.377 0 0 4.4995 4.4995 87.214 0 0 0 42.642886447731016 7.146942222687173 7.146942222687173 10.216276944278832 0 1.3807196863200843 0 1.4194451763165201 0 YPEP{[{M(Oxidation (M))|F}C]|[YS]}VH{[MS]|[{M(Oxidation (M))|F}A]};YPEP[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}QP{[{M(Oxidation (M))|F}C]|[YS]}VH{[MS]|[{M(Oxidation (M))|F}A]};YP{M(Oxidation (M))|F}AEEVH{[MS]|[{M(Oxidation (M))|F}A]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}QP[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}[W{M(Oxidation (M))|F}]E{[QN]|[E{I|L}]|[KN]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[QA]{[{M(Oxidation (M))|F}C]|[YS]}PQ{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[AG]P{[{M(Oxidation (M))|F}C]|[YS]}VH{[MS]|[{M(Oxidation (M))|F}A]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[QA]{[{M(Oxidation (M))|F}C]|[YS]}PE{[QN]|[E{I|L}]|[KN]};Y[WH][WY]H{[MS]|[{M(Oxidation (M))|F}A]} 4.4995;3.6541;3.0947;2.732;2.5385;2.4481;2.188;2.0672;1.939;1.8698 -;-;-;-;-;-;-;-;-;- 269 + NaN NaN 127844.7 NaN 9133 2975 12108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12111 56.347 NaN 264600 35 0 12966 0.262 -1 0 75 514.1036140508972 3078.5780255057834 6 514.2841186523438 MULTI HCD FTMS 0 0 0 12108 28494.87109375 0.5693033449391912 -4 0.10802459716796875 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.50298 0 0 2913.4994255075394 0 2913.4994255075394 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50298 - 50 + NaN NaN 119861.2 NaN 9134 2975 12108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12112 56.351 NaN 194670 35 0 7404.9 0.261 -1 MPDFDVARI 9 59 540.2626150002961 1078.5106770673922 2 540.2640380859375 MULTI HCD FTMS 0 0 0 12108 46041.515625 0.6153590574450354 -4 0.10802459716796875 4 Oxidation (M) _M(Oxidation (M))PDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 14.405379775768559 0.2358970535022398 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVA[R{I|L}] 9 -1 + 42.853 0 0 3.9734 3.9734 89.902 0 0 0 35.86365002801443 4.762036441594191 4.762036441594191 42.85335007137462 0 0 0 0 0 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVA[R{I|L}] 3.9734 + + 90 + NaN NaN 130499 NaN 9135 2975 12108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12114 56.356 NaN 6781800 35 0 1156800 0.327 -1 DPRNATSVCI 10 135 566.7740010513621 1131.5334491695241 2 566.7742309570312 MULTI HCD FTMS 0 0 0 12113 3980118 0.08532978383390703 11 -0.3000373840332031 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 2 SVSTYVSW 8 -1 81.861 0 0 7.2345 0 0 204.08990676093907 0 204.08990676093907 0 29.830699608012026 0 0 0 0.5 0 2.4489700043360187 0 SVSTYVSW 7.2345 - 15581 NaN NaN 626316.1 NaN 9136 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12115 56.36 NaN 2271200 35 0 316570 0.263 + 15449 LPDLEGRTHIF 11 94 433.23469221825985 1296.6822472549795 3 433.23468017578125 MULTI HCD FTMS 0 0 0 12113 801312 0.8080665780215208 2 -0.05570220947265625 2 Unmodified _LPDLEGRTHIF_ ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 36.95490438235368 0.1565614352030347 2 {I|L}PD{I|L}E{[NV]|[RG]}[HT]{I|L}{M(Oxidation (M))|F} 11 0 + 66.673 0 0 5.1418 5.1418 88.162 0 0 0 29.163644054609634 1.301438553739473 1.301438553739473 10.268024924119665 0 1.5752574989159953 1.6989700043360187 0 0.3252574989159953 + + {I|L}PD{I|L}E{[NV]|[RG]}[HT]{I|L}{M(Oxidation (M))|F};{I|L}PD{I|L}E{[NV]|[RG]}[HT]{M(Oxidation (M))|F}{I|L};[{I|L}P]DE{[NV]|[RG]}[HT]{I|L}{I|L}{M(Oxidation (M))|F};{I|L}PD{I|L}E{[NV]|[RG]}{[{M(Oxidation (M))|F}H]|[RQ]}T{I|L};{NN|[MP]|[D{I|L}]|[EV]}PE{[NV]|[RG]}[HT]{I|L}{I|L}{M(Oxidation (M))|F};[DP]{I|L}E{[NV]|[RG]}[HT]{I|L}{I|L}{M(Oxidation (M))|F} 5.1418;4.35;3.7087;3.5964;2.3334;1.9518 +;-;-;-;-;- + 792 + NaN NaN 441204.1 NaN 9137 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12116 56.364 NaN 1042300 35 0 86000 0.261 + 14149 LAELHLSQW 9 99 548.7931644667352 1095.5717760002703 2 548.7933349609375 MULTI HCD FTMS 0 0 0 12113 655353.125 0.7547531746614439 2 -0.05570220947265625 3 Unmodified _LAELHLSQW_ ENST00000590152.1_1_19:9267483-9267588:+|nuORF 47.748688679222035 0.03472022231463587 2 {I|L}TNW 4 7 61.542 0 0 5.6174 0 0 563.3066273419937 0 563.3066273419937 0 30.823872065994564 0 0 0 1.805462187404089 0 0.8494850021680094 0.3054621874040891 {I|L}TNW 5.6174 - 602 NaN NaN 250396.7 NaN 9138 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12117 56.367 NaN 732580 35 0 89454 0.262 + 27037 SYLTSASSL 9 97 464.73484483431275 927.4551367354255 2 464.73541259765625 MULTI HCD FTMS 0 0 0 12113 153816.5 0.772085187549705 -1 0.016178131103515625 4 Unmodified _SYLTSASSL_ ENSG00000104517|ENST00000520539|UBR5;nc|ENSG00000104517|O95071-2|UBR5 136.33342141710068 0.00022087650154924235 2 SY{I|L}{[MG]|[TS]}ASS{I|L} 9 0 + 80.091 0 0 8.6356 8.6356 91.885 0 0 0 8.693316438119282 8.693316438119282 8.693316438119282 8.693316438119282 0 2.548455006504028 1.3979400086720375 1.430574780927802 0 + + SY{I|L}{[MG]|[TS]}ASS{I|L};[Y{I|L}]S{[MG]|[TS]}ASS{I|L};[Y{I|L}]S{[MG]|[TS]}AS{I|L}S;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}ASS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}AS{I|L}S;[Y{I|L}]S{[MG]|[TS]}ATVS;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SS{I|L};[VS]T[YT]ASS{I|L};{[TV]|[{I|L}S]}Y{[MG]|[TS]}ASS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MG]|[TS]}ATVS 8.6356;7.6982;7.1315;7.0347;6.4681;6.3316;5.8735;5.8664;5.8289;5.6681 +;-;-;+;-;-;-;-;-;- + 3468 + NaN NaN 204121.3 NaN 9139 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12118 56.37 NaN 196200 35 0 14230 0.261 + 31478 VYENVSHFL 9 49 554.2772484335095 1106.539943933819 2 554.2764892578125 MULTI HCD FTMS 0 0 0 12113 58799.609375 0.7836085379581648 2 -0.05570220947265625 5 Unmodified _VYENVSHFL_ ENSG00000164933|ENST00000297578|SLC25A32 57.72198328787511 0.020768266150574023 2 [YV]ENVSH{M(Oxidation (M))|F}{I|L} 9 0 + 70.429 0 0 6.3648 6.3648 90.896 0 0 0 55.48000610965907 6.311508337315175 6.311508337315175 13.015384402724592 0 1.8539171939081172 2 0 0.3807196863200844 + + [YV]ENVSH{M(Oxidation (M))|F}{I|L};[YV]EGGVSH{M(Oxidation (M))|F}{I|L};[YV]EK[DG]H{M(Oxidation (M))|F}{I|L};[YV][NP]NKEM{I|L};[YV][NP]KNEM{I|L};[YV][NP]GGKEM{I|L};[YV][NP]KGGEM{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}NKEM{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}KNEM{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}GGKEM{I|L} 6.3648;5.1885;4.6033;3.9694;3.8565;3.1372;3.0243;2.3867;2.2738;1.5545 +;-;-;-;-;-;-;-;-;- + 215 + NaN NaN 119291.5 NaN 9140 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12119 56.374 NaN 260920 35 0 17368 0.261 -1 PMESHLAEVW 10 63 607.7771389374427 1213.5397249416853 2 607.7766723632812 MULTI HCD FTMS 0 0 0 12113 38367.4140625 0.5837791195412338 1 -0.026180267333984375 6 Oxidation (M) _PM(Oxidation (M))ESHLAEVW_ ENSG00000185038|ENST00000389758|MROH2A 6.723162845929126 0.4397169348982109 2 VS[HM] 4 -1 23.812 0 0 1.9622 0 0 741.345995017775 0 741.345995017775 0 9.832881222565248 0 0 0 1 0 0 0 VS[HM] 1.9622 - 35 NaN NaN 120084.2 NaN 9141 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12120 56.377 NaN 130390 35 0 8572.9 0.261 -1 AMQRPCLSCP 10 55 618.2698268946499 1234.5251008560997 2 618.271240234375 MULTI HCD FTMS 0 0 0 12113 33368.51171875 0.16970497775685545 11 -0.3000373840332031 7 2 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))QRPC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))P_ ENST00000567874.5_1_16:90015852-90021630:+|nuORF 3.2813086475875832 0.45793521633868084 2 YYDD[YR]VQN 9 -1 + 42.853 0 0 3.4712 3.4712 85.093 0 0 0 22.67606240177031 13.16061246681059 13.16061246681059 9.208187539523749 0 0 2 0 0 YYDD[YR]VQN;YYDD[YR]V[AG]N 3.4712;2.7254 -;- 45 NaN NaN 120639.2 NaN 9142 2976 12113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12122 56.382 NaN 499700 35 0 200150 0.327 + 8585 HAVPDELVL 9 58 496.77429208791347 991.534031242627 2 496.7744445800781 MULTI HCD FTMS 0 0 0 12121 223670.90625 0.880021639466206 1 -0.029521942138671875 1 Unmodified _HAVPDELVL_ ENSG00000157426|ENST00000205214|AASDH;ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-2|AASDH;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 23.711 0 0 2.3914 0 0 761.3710348370876 0 761.3710348370876 0 8.935078169319297 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.3914 + + 44 NaN NaN 168797.4 NaN 9143 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12123 56.386 NaN 438790 35 0 65401 0.261 + 16732 LYANMFERL 9 76 586.7917627978626 1171.568972662525 2 586.7921142578125 MULTI HCD FTMS 0 0 0 12121 141842.203125 0.24569062390184998 12 -0.3323936462402344 2 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 103.82355648334675 0.003950725192926219 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 109.08 0 0 9.3107 9.3107 93.663 0 0 0 97.84469874110086 9.009461452434238 9.009461452434238 9.208187539523749 0 2.7179001828205482 2 0.8252574989159953 0.3807196863200844 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]{[ET]|[MV]}{[RE]|[WV]}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9.3107;8.5248;7.7953;6.2102;1.9842 +;-;+;-;- + 228 + NaN NaN 155227 NaN 9144 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12124 56.39 NaN 306700 35 0 41654 0.264 + 19163 NHGGVTNF 8 51 423.1985104746906 NaN 0 423.21197509765625 PEAK HCD FTMS 0 0 0 12121 6078.359375 0.5983597077956131 -1 0.026180267333984375 3 Unmodified _NHGGVTNF_ REV__ENSG00000184613|ENST00000429094|NELL2;REV__ENST00000549668.1_1_12:44926343-45059345:-|nuORF;REV__nc|ENSG00000184613|Q99435-2|NELL2;REV__nc|ENSG00000184613|Q99435-3|NELL2;REV__nc|ENSG00000184613|Q99435-4|NELL2 9.347437153973935 0.38822285293237185 2 VGQ 3 -1 12.307 0 0 1.4575 0 0 159.02873862127666 398.1708162897094 557.1995549109861 0 0 0 0 0 0 0 0 0 VGQ 1.4575 - 26 + NaN NaN 132419.4 NaN 9145 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12125 56.393 NaN 228960 35 0 13541 0.261 -1 QYMERLQLL 9 74 605.3181048290442 1208.6216567248882 2 605.3187255859375 MULTI HCD FTMS 0 0 0 12121 49656.51171875 0.05565016296060949 -14 0.3338432312011719 4 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 29.081581746732265 0.1154664336125038 2 Q{I|L}{I|L} 3 -1 27.396 0 0 2.2667 0 0 836.38286025215 0 836.38286025215 0 6.795810205713675 0 0 0 0.5 0 0 1 Q{I|L}{I|L} 2.2667 + + 158 NaN NaN 135093.6 NaN 9146 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12126 56.396 NaN 458120 35 0 34160 0.261 + -1 SAVNGYNELM 10 90 557.2488084088383 1112.4830638844765 2 557.750732421875 MULTI HCD FTMS 0 0 0 12121 118853.6328125 0.5607965819466826 -3 0.0751495361328125 5 Oxidation (M) _SAVNGYNELM(Oxidation (M))_ REV__ENSG00000167377|ENST00000647773|ZNF23;REV__ENSG00000198169|ENST00000292562|ZNF251;REV__nc|ENSG00000167377|P17027|ZNF23 16.149105407346934 0.3600587335443843 2 SAVT 4 -1 33.175 0 0 2.9821 0 0 0 751.2677706354124 751.2677706354124 16.18562527100117 0 0 0 0 0 0 0.2742275032520141 0 SAVT 2.9821 - 476 + NaN NaN 159720.4 NaN 9147 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12127 56.4 NaN 344670 35 0 27203 0.261 + 10396 INGHLNSLQS 10 69 541.7833699247573 1081.5521869163144 2 542.2861938476562 MULTI HCD FTMS 0 0 0 12121 67015.40625 0.5176604375421755 -2 0.0423583984375 6 Unmodified _INGHLNSLQS_ ENSG00000143013|ENST00000370544|LMO4 14.405379775768559 0.37636895476610294 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 8 27.447 0 0 2.5378 0 0 0 731.34514791524 731.34514791524 2.5649873629158293 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.5378 - 136 NaN NaN 146506.2 NaN 9148 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12128 56.403 NaN 111210 35 0 8719.2 0.261 + 20422 PAAYTHTVN 9 52 487.2408006044261 972.4670482756522 2 487.2407531738281 MULTI HCD FTMS 0 0 0 12121 22528.3203125 0.05341388369581453 12 -0.3323936462402344 7 Unmodified _PAAYTHTVN_ REV__ENST00000458669.1_1_16:16412841-16418244:+|nuORF;REV__ENST00000472413.5_1_16:15016937-15019904:+|nuORF;REV__ENST00000525846.6_1_16:18437791-18443539:-|nuORF;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__ENST00000534164.5_1_16:15014190-15019904:+|nuORF;REV__ENST00000536260.5_1_16:16412841-16418555:+|nuORF 7.910154910731844 0.2910521888787154 2 VN 2 -1 16.198 0 0 1.6656 0 0 741.3443470685562 0 741.3443470685562 0 10.79303772831025 0 0 0 0 0 0 0 VN 1.6656 + + 6 NaN NaN 109399.7 NaN 9149 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12129 56.406 NaN 90355 35 0 4026.9 0.261 -1 0 37 630.9462071210137 NaN 0 631.1199340820312 PEAK HCD FTMS 0 0 0 12121 24705.890625 1 0 0 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106039.3 NaN 9150 2977 12121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12131 56.411 NaN 1716300 35 0 158230 0.327 -1 LCPSYQSYF 9 112 582.7540171851695 1163.4934814371388 2 582.76953125 MULTI HCD FTMS 0 0 0 12130 76417.6328125 0.6799515763072868 3 -0.07820510864257812 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))PSYQSYF_ CON__O76011;CON__Q14525;CON__Q15323;CON__Q8IUT8;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENSG00000131737|ENST00000394001|KRT34;ENSG00000131738|ENST00000251646|KRT33B 15.847184025352803 0.2234401846867398 2 SVSTYVSW 8 -1 64.916 0 0 5.5794 0 0 236.0485120371091 0 236.0485120371091 0 20.80652530802702 0 0 0 0 0 1.4049471895720984 0 SVSTYVSW 5.5794 - 10615 + NaN NaN 352504.9 NaN 9151 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12132 56.416 NaN 1252100 35 0 122760 0.261 + 1868 CVSSFFAISW 10 115 573.7656391822765 1145.5167254313528 2 573.7642211914062 MULTI HCD FTMS 0 0 0 12130 474094.3125 0.07277132644870361 12 -0.33574676513671875 2 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 46.020951573049366 0.09315764076686055 2 SSVSTYVSW 9 7 83.168 0 0 7.2603 0 0 131.02583167319796 0 131.02583167319796 0 57.93940409318 0 0 0 2.780369551124698 0 1.5545970543767123 0 SSVSTYVSW 7.2603 - 5105 + NaN NaN 277723.8 NaN 9152 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12133 56.419 NaN 859890 35 0 79409 0.262 + 18270 MPDVDLHL 8 83 478.23139562648873 954.4482383197775 2 478.2312927246094 MULTI HCD FTMS 0 0 0 12130 379095.15625 0.34446102144538043 13 -0.3619728088378906 3 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 72.261 0 0 7.5709 7.5709 89.547 0 0 0 6.593793813122062 54.301915820410684 6.593793813122062 6.8753063169585005 0 2.305462187404089 0 1.8851518780601921 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;[YQ]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NS]{I|L};[YQ]{[CP]|[EA]}[KT]C{I|L} 7.5709;6.8506;4.1491;0.90436;0.011638 +;+;-;-;- + 403 NaN NaN 232674.1 NaN 9153 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12134 56.423 NaN 491880 35 0 119180 0.261 + 29003 TYDYNFHSF 9 74 597.2485913785778 1192.4826298239554 2 597.2486572265625 MULTI HCD FTMS 0 0 0 12130 266880.6875 0.15232522533307857 13 -0.3619728088378906 4 Unmodified _TYDYNFHSF_ ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L 97.74103586103693 0.004323122048066454 2 TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F} 9 0 + 113.89 0 0 9.5508 9.5508 95.421 0 0 0 94.4272215603185 16.137954815419008 16.137954815419008 12.460762528683702 0 2.853917193908117 2 1.350576203518622 0.3252574989159953 + + TYDYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYN{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};[YT]DYGG{M(Oxidation (M))|F}HS{M(Oxidation (M))|F};TYDYN{[WN]|[YH]}A{M(Oxidation (M))|F};TYDYGG{[WN]|[YH]}A{M(Oxidation (M))|F} 9.5508;8.5058;8.0181;6.9266;5.9222;5.15 +;-;+;-;-;- + 451 + NaN NaN 169010.4 NaN 9154 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12135 56.426 NaN 861410 35 0 122940 0.261 + 31352 VYAALQRQLL 10 96 587.8507885767203 1173.6870242202406 2 587.8507690429688 MULTI HCD FTMS 0 0 0 12130 480990.53125 1 0 0 5 Unmodified _VYAALQRQLL_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC 149.9946105101851 2.0398554330890894E-07 2 [YV]AA{I|L}QRQ{I|L}{I|L} 10 0 + 103 0 0 8.7757 8.7757 89.412 0 0 0 2.04628427264403 16.53212513775344 2.04628427264403 2.04628427264403 0 3.086696871556164 1.5228787452803376 0 0.6549471895720985 + + [YV]AA{I|L}QRQ{I|L}{I|L};[Y{I|L}]GA{I|L}QRQ{I|L}{I|L};[YV]AA{I|L}QR[AG]{I|L}{I|L};[YV]AA{I|L}[AG]RQ{I|L}{I|L};[Y{I|L}]GA{I|L}QR[AG]{I|L}{I|L};[Y{I|L}]GA{I|L}[AG]RQ{I|L}{I|L};[Y{I|L}]Q{I|L}QRQ{I|L}{I|L};[Y{I|L}]AG{I|L}QRQ{I|L}{I|L};[YV]AA{I|L}QR{I|L}Q{I|L};[Y{I|L}]GA{I|L}QR{I|L}Q{I|L} 8.7757;8.6014;7.9949;7.9949;7.8206;7.8206;7.6188;7.5799;7.413;7.2386 +;-;-;-;-;-;-;-;-;- + 2539 NaN NaN 218729.4 NaN 9155 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12136 56.429 NaN 595910 35 0 33496 0.261 + 17843 MHSSIEAVSSM 11 103 589.7606137033783 1177.5066744735566 2 589.7589721679688 MULTI HCD FTMS 0 0 0 12130 298373.75 0.13512407351595557 12 -0.33574676513671875 6 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 27.628801355627647 0.21662447369784368 2 DSVS{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 43.472 0 0 3.6918 0 0 553.2662831037125 0 553.2662831037125 0 19.343121680897543 0 0 0 1.1109243748081783 0 1.0451140161145327 0 DSVS{[MS]|[{M(Oxidation (M))|F}A]} 3.6918 - 1025 NaN NaN 187821.7 NaN 9156 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12137 56.432 NaN 668750 35 0 55010 0.261 + 25527 SFLADPDCVF 10 100 557.2488084088383 1112.4830638844765 2 557.2489013671875 MULTI HCD FTMS 0 0 0 12130 179127.84375 0.49928240182031364 -2 0.05570220947265625 7 Unmodified _SFLADPDCVF_ REV__ENSG00000244405|ENST00000306376|ETV5;REV__nc|ENSG00000244405|P41161-2|ETV5 19.256988751693697 0.33098864134661865 2 SAV[WM]{I|L}D 7 -1 32.325 0 0 2.9057 0 0 0 307.10883508853755 307.10883508853755 4.568174985992783 0 0 0 0 0 0 0.5994850021680094 0 SAV[WM]{I|L}D 2.9057 - 1078 + NaN NaN 192276.3 NaN 9157 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12138 56.436 NaN 321870 35 0 23981 0.261 + 7128 FSADSIQPFLP 11 49 611.3111839215513 1220.6078149099026 2 611.3108520507812 MULTI HCD FTMS 0 0 0 12130 134801 0.5234704733036711 5 -0.137054443359375 8 Unmodified _FSADSIQPFLP_ REV__ENST00000229633.6_1_6:126299317-126299416:+|nuORF 8.155526934196011 0.3831532958467648 2 {I|L}P 2 -1 25.217 0 0 2.0659 0 0 992.4591883255182 0 992.4591883255182 0 22.452315297631706 0 0 0 0.4247425010840047 0 0 0 {I|L}P 2.0659 + + 5 NaN NaN 138128.8 NaN 9158 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12139 56.439 NaN 331600 35 0 40522 0.261 + 1061 AYGSFGAFLF 10 68 540.2626150002961 1078.5106770673922 2 541.7839965820312 MULTI HCD FTMS 0 0 0 12130 20246.23046875 1 0 0 9 Unmodified _AYGSFGAFLF_ REV__tr|U7SQT6|U7SQT6_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01789PE=4SV=1 7.289230182591677 0.43672065049472153 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y[QP]{I|L}C 8 -1 31.138 0 0 2.8871 0 0 0 124.04463765899416 124.04463765899416 21.67403451429223 0 0 0 0 0 1.6989700043360187 0.7059771852360797 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y[QP]{I|L}C 2.8871 - 97 NaN NaN 137991.2 NaN 9159 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12140 56.442 NaN 729460 35 0 75501 0.261 + 29394 TYQLGFHSI 9 98 533.2716439380696 1064.528734942939 2 533.2708129882812 MULTI HCD FTMS 0 0 0 12130 31056.458984375 0.2792670252367821 5 -0.137054443359375 10 Unmodified _TYQLGFHSI_ ENSG00000142507|ENST00000270586|PSMB6 26.268140514670165 0.13340543277302316 2 K{I|L}TN 4 8 35.477 0 0 3.3327 0 0 590.2650624005875 0 590.2650624005875 0 3.0546218740408904 0 0 0 0 0 0.2742275032520141 0.3807196863200844 K{I|L}TN 3.3327 - 1134 NaN NaN 196715.4 NaN 9160 2978 12130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12142 56.447 NaN 23625000 35 0 2959800 0.327 + 19458 NPSVREFVL 9 123 530.7929050215179 1059.5712571098356 2 530.7933959960938 MULTI HCD FTMS 0 0 0 12141 18778698 0.9580706364356567 -1 0.03604888916015625 1 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 168.5375213894962 4.622051367253751E-09 2 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 107.14 0 0 10.112 10.112 97.585 0 0 0 25.48332479720628 16.478174818886373 16.478174818886373 25.48332479720628 0 2.1989700043360187 1.2218487496163564 1.3539171939081172 2.5783409326844264 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};[PS]NVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};[PS]GGVRE{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[PS]RE{M(Oxidation (M))|F}V{I|L};[PS][RV]NE{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}V]ERSPNV{I|L};[PS]NVRV[{M(Oxidation (M))|F}E]{I|L};[{M(Oxidation (M))|F}E]VRSPNV{I|L} 10.112;7.7067;6.8397;6.6755;6.2316;5.6602;4.9513;4.4004;4.2705;4.2342 +;-;+;-;-;-;-;-;-;- + 3365 NaN NaN 1072030.9 NaN 9161 2979 12141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12143 56.452 NaN 796420 35 0 107890 0.261 + 29333 TYNYPVHYF 9 89 602.277009022743 1202.5394651122858 2 602.277099609375 MULTI HCD FTMS 0 0 0 12141 387641.65625 0.4945665404627276 -4 0.10792922973632812 2 Unmodified _TYNYPVHYF_ ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A 88.95385435242217 0.004553379958619559 2 YTNYPVHY{M(Oxidation (M))|F} 9 2 + 90.36 0 0 7.5141 7.5141 87.097 0 0 0 1.2248627423174696 1.2248627423174696 1.2248627423174696 1.2248627423174696 0 2.6989700043360187 2 0 0.3807196863200844 YTNYPVHY{M(Oxidation (M))|F};[YT]NYPVHY{M(Oxidation (M))|F};YTNSVPYT{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YTGGYPVHY{M(Oxidation (M))|F};[YT]GGYPVHY{M(Oxidation (M))|F};YTGGSVPYT{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]TYPVHY{M(Oxidation (M))|F};[YT]NYPV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}W;YTNSW{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SW;[YT]NYPV[W{M(Oxidation (M))|F}]N 7.5141;7.4122;7.0469;6.4317;6.3925;6.2848;6.2687;6.1779;6.0826;6.082 -;+;-;-;-;-;-;-;-;- + 2316 + NaN NaN 206983.4 NaN 9162 2979 12141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12144 56.455 NaN 381500 35 0 45554 0.261 + 16045 LPSFIFGRKS 10 77 576.3311238006395 NaN 0 576.342529296875 PEAK HCD FTMS 0 0 0 12141 13651.6015625 0.6070899277610565 1 -0.019412994384765625 3 Unmodified _LPSFIFGRKS_ REV__ENST00000537595.1_10:102122289-102122870:+|nuORF 13.90604991867851 0.3282826376286837 2 PEG{I|L}R 5 -1 21.414 0 0 1.8611 0 0 113.06187797659761 482.2618670488968 595.3237450254944 0 0 0 0 0 0 0 0.4247425010840047 0 PEG{I|L}R 1.8611 - 84 + NaN NaN 149408.2 NaN 9163 2979 12141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12145 56.459 NaN 335440 35 0 30165 0.261 -1 0 51 593.1555420702344 592.1482656036344 1 593.1563110351562 MULTI HCD FTMS 0 0 0 12141 59871.8125 0.5795032022961768 14 -0.3887138366699219 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 134896.1 NaN 9164 2979 12141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12146 56.462 NaN 188170 35 0 35122 0.261 -1 CWLWKDWCYL 10 49 510.5604597522151 NaN 0 510.26165771484375 PEAK HCD FTMS 0 0 0 12141 12319.2548828125 0.8538203279476758 -1 0.03604888916015625 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))WLWKDWC(Carbamidomethyl (C))YL_ ENST00000359785.9_1_1:114397123-114397534:-|nuORF 0.6268255596534771 0.33964781322640114 2 {I|L} 1 -1 6.9897 0 0 0.68587 0 0 724.9497026081427 178.05085169010002 903.0005542982427 0 0 0 0 0 0 0 0 0 {I|L} 0.68587 + + 4 + NaN NaN 115379.5 NaN 9165 2979 12141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12148 56.467 NaN 511060 35 0 122120 0.327 + 1042 AYGHFSYEF 9 66 560.7409475636375 1119.467342194075 2 560.740478515625 MULTI HCD FTMS 0 0 0 12147 344298.53125 0.1512858168392422 8 -0.21833038330078125 1 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 123.09622228370866 0.0010236603636890153 2 {M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 5 4 63.32 0 0 5.6563 0 0 428.18071181465 0 428.18071181465 0 42.86273027619883 0 0 0 1.8494850021680094 0 1.1382104921644451 0 + {M(Oxidation (M))|F}SYE{M(Oxidation (M))|F} 5.6563 + + 316 NaN NaN 161696.7 NaN 9166 2980 12147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12149 56.471 NaN 576000 35 0 72177 0.261 + 22267 QPDNIKALF 9 81 523.2877871369421 1044.5610213406842 2 523.2880859375 MULTI HCD FTMS 0 0 0 12147 377195.53125 0.7868140978439536 2 -0.05548095703125 2 Unmodified _QPDNIKALF_ ENSG00000105701|ENST00000608443|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318-3|FKBP8;nc|ENSG00000105701|Q14318|FKBP8 37.97399986684836 0.07464525285885698 2 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F} 9 2 + 40.275 0 0 3.8557 3.8557 83.402 0 0 0 16.08399024976581 14.072355395636862 14.072355395636862 6.422042885466077 0 0.3252574989159953 0 0 0.2742275032520141 [NP]EN{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DN{I|L}KA{I|L}{M(Oxidation (M))|F};[NP]EGG{I|L}KA{I|L}{M(Oxidation (M))|F};[NP]A[DG]{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]DGG{I|L}KA{I|L}{M(Oxidation (M))|F};[QP]G[DG]{I|L}KA{I|L}{M(Oxidation (M))|F};[KA]PA[VG][DG]A{I|L}{M(Oxidation (M))|F};[KA]PA[VG]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F};[NP]A{I|L}K[DG]A{I|L}{M(Oxidation (M))|F};[NP]A{I|L}K{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F} 3.8557;3.2409;2.9741;2.9741;2.3593;2.3593;1.6438;1.471;1.3926;1.224 -;+;-;-;-;-;-;-;-;- + 677 + NaN NaN 178593.3 NaN 9167 2980 12147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12150 56.475 NaN 385550 35 0 35416 0.261 + 16155 LPVALQTRL 9 62 505.8215810429122 1009.6286091526244 2 505.82147216796875 MULTI HCD FTMS 0 0 0 12147 142599.75 0.4559576711625352 2 -0.05548095703125 3 Unmodified _LPVALQTRL_ ENSG00000102103|ENST00000447146|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1 43.981846655682396 0.04706587046877104 2 {I|L}PVA{I|L}QTR{I|L} 9 0 + 88.058 0 0 8.7218 8.7218 93.035 0 0 0 70.52169411664337 6.127042801912879 6.127042801912879 9.208187539523749 0 2.1237125054200234 1.6989700043360187 0.4247425010840047 0 + + {I|L}PVA{I|L}QTR{I|L};{I|L}PVA{I|L}[AG]TR{I|L};{I|L}PV[{I|L}V][NS]R{I|L} 8.7218;7.8097;4.0408 +;-;- + 143 + NaN NaN 153794.6 NaN 9168 2980 12147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12151 56.478 NaN 509060 35 0 83460 0.261 + 24880 RYQGVNLYI 9 60 563.3065776572029 1124.5986023812056 2 563.3069458007812 MULTI HCD FTMS 0 0 0 12147 208149.46875 1 0 0 4 Unmodified _RYQGVNLYI_ ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4 32.30548876998284 0.10066689432505688 2 [Y{I|L}]NGRN{I|L}Y{I|L} 9 3 + 78.254 0 0 6.9584 6.9584 90.197 0 0 0 21.751736484954378 72.31176348118694 21.751736484954378 9.208187539523749 0 1.305462187404089 1.6989700043360187 0 0.3807196863200844 [Y{I|L}]NGRN{I|L}Y{I|L};[Y{I|L}]GGGRN{I|L}Y{I|L};[Y{I|L}]NGRGG{I|L}Y{I|L};[Y{I|L}]NGRVQY{I|L};[Y{I|L}]GGGRGG{I|L}Y{I|L};[Y{I|L}]GGGRVQY{I|L};[Y{I|L}]NGRV[AG]Y{I|L};[Y{I|L}]NGR{[{M(Oxidation (M))|F}D]|MM}K{I|L};[Y{I|L}]GGGRV[AG]Y{I|L};[Y{I|L}]GGGR{[{M(Oxidation (M))|F}D]|MM}K{I|L} 6.9584;6.1396;6.1396;5.8292;5.3247;5.0104;5.0104;4.2011;4.1955;3.3823 -;-;-;-;-;-;-;-;-;- 387 NaN NaN 175542.9 NaN 9169 2980 12147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12152 56.481 NaN 33566 35 0 3365.2 0.261 + 30763 VPNLPQRF 8 31 485.77783203125 NaN 0 485.77783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VPNLPQRF_ ENSG00000105954|ENST00000222674|NPVF;nc|ENSG00000105954|Q9HCQ7-2|NPVF 2.8892196856762586 0.38822285293237185 2 V 1 7 1.1092 0 0 0.11441 0 0 502.30039872871254 365.14850794010005 867.4489066688126 0 0 0 0 0 0 0 0 0 + V 0.11441 + + 1 + NaN NaN 90203.9 NaN 9170 2980 12147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12153 56.485 NaN 146290 35 0 42563 0.261 + 17869 MIHDLETLDM 10 54 406.5212840424444 NaN 0 406.8219299316406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MIHDLETLDM_ REV__ENSG00000179833|ENST00000313349|SERTAD2 3.5870582119611467 0.3371142643538189 2 R 1 -1 10.485 0 0 1.2927 0 0 262.7210826339138 389.17002283267817 651.891105466592 0 0 0 0 0 0 0 0 0.5 R 1.2927 - 1 + NaN NaN 117855.9 NaN 9171 2980 12147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12155 56.489 NaN 3585200 35 0 605650 0.327 -1 DPRNATSVCI 10 118 566.7740010513621 1131.5334491695241 2 566.774658203125 MULTI HCD FTMS 0 0 0 12154 2129657.25 0.04565773999233513 16 -0.4479484558105469 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 2 P{M(Oxidation (M))|F}STSVSW 8 -1 93.129 0 0 8.2303 0 0 222.09897910510682 0 222.09897910510682 0 60.31427260186008 0 0 0 2.774227503252014 0 1.7786596949921218 0 P{M(Oxidation (M))|F}STSVSW 8.2303 - 8062 + NaN NaN 603338.4 NaN 9172 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12156 56.494 NaN 3500300 35 0 599120 0.261 + 17494 LYTEKFEEF 9 113 603.2891382615143 1204.5637235898284 2 603.3016357421875 MULTI HCD FTMS 0 0 0 12154 373457.6875 0.5270807383177215 -2 0.042156219482421875 2 Unmodified _LYTEKFEEF_ ENSG00000084652|ENST00000373610|TXLNA 96.93554129104106 0.004344229100022454 2 VYP{M(Oxidation (M))|F}KG{[QG]|[NA]}Y{M(Oxidation (M))|F} 10 7 + 59.575 0 0 4.9458 4.9458 82.406 0 0 0 0.4228813896716588 3.0815970334744236 0.4228813896716588 0.4228813896716588 0 1.25 2 0 0.3252574989159953 VYP{M(Oxidation (M))|F}KG{[QG]|[NA]}Y{M(Oxidation (M))|F};{I|L}YTEQE{I|L}Y{M(Oxidation (M))|F};[YV][R{M(Oxidation (M))|F}]PDVY{M(Oxidation (M))|F};[Y{I|L}]T[PS]TDVY{M(Oxidation (M))|F};[Y{I|L}]T{[MG]|[TS]}PDVY{M(Oxidation (M))|F};[YV]{[DS]|[MA]|[CV]|TT}TPDVY{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}VTDVY{M(Oxidation (M))|F};VYP[PS][VP]HY{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KG[HN]P{M(Oxidation (M))|F};{I|L}YCYT[W{I|L}]P{M(Oxidation (M))|F} 4.9458;4.9107;4.6899;4.6381;4.4437;4.44;4.322;4.2522;4.1818;4.1725 -;-;-;-;-;-;-;-;-;- 13506 + NaN NaN 623476.2 NaN 9173 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12157 56.497 NaN 514650 35 0 40676 0.261 + 18155 MPDGQFKDISL 11 88 633.8053872185288 1265.5962215038576 2 633.8054809570312 MULTI HCD FTMS 0 0 0 12154 282233 0.5855966322793796 3 -0.0850372314453125 3 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 90.96430476242004 0.009850815837011471 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 85.227 0 0 6.7342 6.7342 92.212 0 0 0 4.3572856956143795 69.73343107206486 4.3572856956143795 16.391208547781787 0 2.305462187404089 0 1.6237125054200234 0.5994850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KDS{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KS{I|L}D{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KSD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KS{I|L}VE;{M(Oxidation (M))|F}V{I|L}S[DN]{M(Oxidation (M))|F}[QP]S{I|L} 6.7342;5.439;5.037;4.8484;3.9878;2.2266 +;-;-;-;-;- + 317 NaN NaN 165029.2 NaN 9174 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12158 56.501 NaN 707870 35 0 101510 0.261 + 5726 FPAGYMYPSM 10 94 598.2435232613002 1194.4724935894003 2 598.2426147460938 MULTI HCD FTMS 0 0 0 12154 324650.09375 0.9992760906277591 -35 0.9182395935058594 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 2 [YT]DR{M(Oxidation (M))|F}YPST 9 6 81.364 0 0 6.8117 0 0 0 60.97595039386843 60.97595039386843 45.08778992970908 0 0 0 0 1.774227503252014 2 1.3945990182825423 0 [YT]DR{M(Oxidation (M))|F}YPST 6.8117 - 2655 NaN NaN 197458 NaN 9175 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12159 56.504 NaN 625850 35 0 67312 0.264 + 15450 LPDLEGRTHIF 11 74 433.23469221825985 1296.6822472549795 3 433.23468017578125 MULTI HCD FTMS 0 0 0 12154 176054.625 0.1775386595590882 7 -0.195587158203125 5 Unmodified _LPDLEGRTHIF_ ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 21.2413784809298 0.27200558463088126 2 {I|L}PD 3 8 40.991 0 0 3.1612 0 0 0 968.4921718042948 968.4921718042948 23.287793280423713 0 0 0 0 0.5629529932484498 1.154901959985743 0 0 + {I|L}PD 3.1612 + + 55 + NaN NaN 177026.6 NaN 9176 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12160 56.507 NaN 612560 35 0 58188 0.261 + 8544 HALSLKIVL 9 82 497.3264750078222 992.6383970824444 2 497.3268127441406 MULTI HCD FTMS 0 0 0 12154 121523.5546875 0.5340473665052818 -2 0.042156219482421875 6 Unmodified _HALSLKIVL_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 96.36657018975838 0.004359138328518304 2 [HA]{I|L}S{I|L}K{I|L}V{I|L} 9 0 + 78.604 0 0 7.9187 7.9187 92.843 0 0 0 18.116742845273066 55.081918264867724 18.116742845273066 9.815534464597704 0 1.7302046884880937 1.0969100130080565 1.4291746928241125 0 + + [HA]{I|L}S{I|L}K{I|L}V{I|L};[HA]{I|L}S{I|L}KV{I|L}{I|L};{[TV]|[{I|L}S]}[HA]{I|L}K{I|L}V{I|L};HA{I|L}S{I|L}K{I|L}V{I|L};[{I|L}V]KT[HA]{I|L}V{I|L};{[TV]|[{I|L}S]}[HA]{I|L}KV{I|L}{I|L};HA{I|L}S{I|L}[{I|L}V]K{I|L};[{I|L}V]KT[HA]V{I|L}{I|L};[{I|L}V]KTV{I|L}AH{I|L};[{I|L}V]KT{I|L}[HA]V{I|L} 7.9187;6.9298;5.0049;4.6697;4.2546;4.0161;3.6977;3.2658;3.2049;3.0371 +;-;-;+;-;-;-;-;-;- + 585 NaN NaN 176994.9 NaN 9177 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12161 56.511 NaN 214140 35 0 19134 0.261 + 6969 FPVRDGVVL 9 59 501.29256912307454 1000.5705853129491 2 501.29278564453125 MULTI HCD FTMS 0 0 0 12154 77286.453125 0.09905367851303083 18 -0.5035514831542969 7 Unmodified _FPVRDGVVL_ ENSG00000108175|ENST00000334512|ZMIZ1;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;nc|ENSG00000122515|Q8NF64-3|ZMIZ2 12.240655878213236 0.2545997876781172 2 V{I|L} 2 7 25.969 0 0 2.5954 0 0 770.4072957065252 0 770.4072957065252 0 7.7815125038364386 0 0 0 0.5 0 0 0 + V{I|L} 2.5954 + + 25 NaN NaN 129557.6 NaN 9178 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12162 56.514 NaN 240700 35 0 13125 0.261 -1 0 64 579.2778775342234 1156.5412021352467 2 579.278076171875 MULTI HCD FTMS 0 0 0 12154 86308.0703125 0.05773384914060783 44 -1.183837890625 8 NaN NaN 2 {[QS]|[NT]}{M(Oxidation (M))|F}AA[RD]NTC 10 -1 18.746 0 0 1.6209 0 0 0 60.057818500701984 60.057818500701984 11.756368635175605 0 0 0 0 0 0 0.5 0.4247425010840047 {[QS]|[NT]}{M(Oxidation (M))|F}AA[RD]NTC 1.6209 - 150 NaN NaN 118044.6 NaN 9179 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12163 56.517 NaN 205480 35 0 8375 0.261 -1 GYNVKFDMF 9 59 568.7574583885823 1135.5003638439646 2 569.7593994140625 MULTI HCD FTMS 0 0 0 12154 50640.1875 0.7901474274000067 -1 0.02274322509765625 9 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ ENSG00000167468|ENST00000354171|GPX4;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;ENST00000589115.5_1_19:1105440-1106426:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4 38.175570920033316 0.07371992880350783 2 [YG]NV 4 -1 42.479 0 0 3.741 0 0 0 699.281329863194 699.281329863194 9.599009323677095 0 0 0 0 1.2302046884880937 2 0 0 [YG]NV 3.741 + + 183 NaN NaN 122238 NaN 9180 2981 12154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12165 56.522 NaN 4645700 35 0 834560 0.327 + 17495 LYTEKFEEF 9 119 603.2891382615143 1204.5637235898284 2 603.299560546875 MULTI HCD FTMS 0 0 0 12164 480413.65625 0.6780333973823102 -1 0.03273773193359375 1 Unmodified _LYTEKFEEF_ ENSG00000084652|ENST00000373610|TXLNA 136.39213081522345 0.00021731600835925866 2 {I|L}YTEK{M(Oxidation (M))|F}EE{M(Oxidation (M))|F} 9 0 + 72.841 0 0 6.0471 6.0471 86.796 0 0 0 13.02362753455482 7.688849488981745 7.688849488981745 6.741046038961272 0 2.118415180652539 1.5228787452803376 1.8595756168365016 0.3252574989159953 + + {I|L}YTEK{M(Oxidation (M))|F}EE{M(Oxidation (M))|F};{I|L}YTE{M(Oxidation (M))|F}KEE{M(Oxidation (M))|F};{I|L}YTEQE{I|L}Y{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KG{[QG]|[NA]}Y{M(Oxidation (M))|F};[Y{I|L}]TAC{M(Oxidation (M))|F}{M(Oxidation (M))|F}PP{M(Oxidation (M))|F};{I|L}Y{M(Oxidation (M))|F}[RH]EPP{M(Oxidation (M))|F};{I|L}YTEQ[Y{I|L}]E{M(Oxidation (M))|F};{I|L}YTEM[HA]PP{M(Oxidation (M))|F};[YV]PE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PP{M(Oxidation (M))|F};VYP{M(Oxidation (M))|F}KGYT[KC] 6.0471;5.4875;5.4088;4.9659;4.7528;4.7273;4.667;4.6232;4.6137;4.5999 +;-;-;-;-;-;-;-;-;- + 18996 + NaN NaN 798658.2 NaN 9181 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12166 56.527 NaN 988220 35 0 96102 0.263 + 15808 LPHTDFTL 8 84 472.24783609818707 942.4811192631742 2 472.24774169921875 MULTI HCD FTMS 0 0 0 12164 259637.703125 0.1119331995194383 -6 0.16664505004882812 2 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 56.541270873467816 0.08727196028825994 2 [{I|L}P]H{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L} 8 0 + 45.411 0 0 4.8183 4.8183 84.955 0 0 0 12.67606240177031 13.75569708000178 12.67606240177031 7.034021960761265 0 0.4247425010840047 2 0.6549471895720985 0 + + [{I|L}P]H{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VNPEP{I|L};[{I|L}P]{M(Oxidation (M))|F}QEV[NP];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VGGPEP{I|L};{I|L}TNE[{I|L}P]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{I|L}T][RD]YY{I|L};{I|L}TN[{I|L}P]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{I|L}TNE[W{I|L}][PA];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}P][DN]P{I|L} 4.8183;4.0719;3.3006;2.9736;2.9269;2.2753;1.7665;1.6365;1.5822;1.5323 +;-;-;-;-;-;-;-;-;- + 605 NaN NaN 252713.6 NaN 9182 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12167 56.53 NaN 321090 35 0 16649 0.261 + 5378 FGNRDYVIL 9 81 548.7931644667352 1095.5717760002703 2 548.7932739257812 MULTI HCD FTMS 0 0 0 12164 85523.703125 0.09849542785410018 8 -0.22480392456054688 3 Unmodified _FGNRDYVIL_ REV__ENSG00000103365|ENST00000309859|GGA2 24.020572477871973 0.15282392193088168 2 {I|L}TNW 4 -1 56.428 0 0 5.1505 0 0 563.3070545880875 0 563.3070545880875 0 31.998103176992174 0 0 0 1.6989700043360187 0 0.75 0 {I|L}TNW 5.1505 - 347 NaN NaN 135743.7 NaN 9183 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12168 56.533 NaN 418420 35 0 42159 0.261 + 17572 LYVMVNAKF 9 81 550.7939948191972 1099.5734367051944 2 550.7940673828125 MULTI HCD FTMS 0 0 0 12164 109304.234375 0.2883909970681329 -6 0.16664505004882812 4 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ ENSG00000074201|ENST00000525428|CLNS1A 96.28474662873226 0.004361282420133734 2 {I|L}YV{M(Oxidation (M))|F}VNAK 8 1 95.66 0 0 8.6997 0 0 0 162.05600916080314 162.05600916080314 80.1751942498911 0 0 0 0 3.0356668758921828 2 0 0.8494850021680094 + {I|L}YV{M(Oxidation (M))|F}VNAK 8.6997 + + 414 + NaN NaN 151151 NaN 9184 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12169 56.537 NaN 172040 35 0 26404 0.261 + 31527 VYGFVREAL 9 44 527.290378953345 1052.56620497349 2 527.2909545898438 MULTI HCD FTMS 0 0 0 12164 64482.86328125 0.11656996762967901 10 -0.28101348876953125 5 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 26.268140514670165 0.13340543277302316 2 [YV]G{M(Oxidation (M))|F}V 5 4 48.57 0 0 4.6144 0 0 0 484.2524813287719 484.2524813287719 43.0854562117252 0 0 0 0 1.1747425010840047 2 0 0 + [YV]G{M(Oxidation (M))|F}V 4.6144 + + 61 + NaN NaN 112633.3 NaN 9185 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12170 56.54 NaN 96731 35 0 19817 0.262 + 21035 PLSKLHAN 8 38 440.255363712597 878.496174491994 2 440.25518798828125 MULTI HCD FTMS 0 0 0 12164 43553.4453125 0.7524323152644999 -5 0.14046478271484375 6 Unmodified _PLSKLHAN_ ENSG00000145623|ENST00000274276|OSMR 2.8892196856762586 0.5377058178582064 2 Y{M(Oxidation (M))|F} 2 8 14.693 0 0 1.6725 0 0 550.3531213687503 0 550.3531213687503 0 7.703037561203843 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.6725 - 15 + NaN NaN 92884 NaN 9186 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12171 56.543 NaN 235690 35 0 16646 0.261 + 23775 RRLTCPGF 8 74 475.2555948358159 NaN 0 475.2707824707031 PEAK HCD FTMS 0 0 0 12164 11105.8955078125 1 0 0 7 Unmodified _RRLTCPGF_ ENST00000344120.4_1_5:141704428-141704542:-|nuORF 5.230669730166228 0.38822285293237185 2 V 1 8 6.9897 0 0 0.73692 0 0 249.15375451362553 597.2499483697874 846.403702883413 0 0 0 0 0 0 0 0 0 V 0.73692 - 31 + NaN NaN 139873.6 NaN 9187 2982 12164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12173 56.548 NaN 1225600 35 0 105590 0.327 + 4005 ERNLAEQSSM 10 107 582.769221728906 1163.523890524612 2 582.7696533203125 MULTI HCD FTMS 0 0 0 12172 596836.8125 0.061737598547269845 18 -0.4937629699707031 1 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 22.736283301280096 0.29844449404982915 2 SVSTYVSW 8 -1 75.96 0 0 6.5284 0 0 236.0791848239258 0 236.0791848239258 0 56.41055354555377 0 0 0 2.6479400086720375 0 1.2416440611282624 0 SVSTYVSW 6.5284 - 8915 + NaN NaN 273925.2 NaN 9188 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12174 56.553 NaN 491500 35 0 57734 0.263 + 24914 RYSAGWDAKFF 11 63 449.88745542929064 1346.640536888072 3 449.8876037597656 MULTI HCD FTMS 0 0 0 12172 123633.7109375 0.9678949291481596 1 -0.026187896728515625 2 Unmodified _RYSAGWDAKFF_ ENSG00000025423|ENST00000322165|HSD17B6 40.31683856557338 0.1349095210342689 2 GWD[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 4 62.211 0 0 4.6197 0 0 477.23366105614156 0 477.23366105614156 0 51.68916321785865 0 0 0 2.4247425010840047 0 0.7742275032520141 0 + GWD[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.6197 + + 276 NaN NaN 179365.9 NaN 9189 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12175 56.556 NaN 343210 35 0 25248 0.261 + 33175 YESDIPEEL 9 68 547.7481962686063 1093.4818396040125 2 547.7627563476562 MULTI HCD FTMS 0 0 0 12172 65067.13671875 1 0 0 3 Unmodified _YESDIPEEL_ DIS3L2|p.P613Afs*8|1|0.2|ENSG00000144535|chr2:232329902-232329903|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2 26.88365393820708 0.12808753336095696 2 VYV[R{M(Oxidation (M))|F}]V{M(Oxidation (M))|F} 7 9 43.703 0 0 3.9966 0 0 165.01569082661484 0 165.01569082661484 0 7.160225703182164 0 0 0 0 0 0 1.524227503252014 VYV[R{M(Oxidation (M))|F}]V{M(Oxidation (M))|F} 3.9966 - 222 + NaN NaN 142699.9 NaN 9190 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12176 56.56 NaN 247340 35 0 13974 0.261 -1 0 70 579.2778775342234 1156.5412021352467 2 579.2781982421875 MULTI HCD FTMS 0 0 0 12172 54806.90234375 0.03666184888992721 46 -1.2262802124023438 4 NaN NaN 2 CTNM 4 -1 20.79 0 0 1.7976 0 0 63.086923355743984 641.3043917291624 704.3913150849064 0 0 0 0 0 0 0 0 0.4247425010840047 CTNM 1.7976 - 87 + NaN NaN 135779 NaN 9191 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12177 56.563 NaN 216860 35 0 21932 0.263 + -1 KMWIGVRLRE 10 57 435.2483503465838 1302.7232216399514 3 435.2483825683594 MULTI HCD FTMS 0 0 0 12172 81694.140625 0.39322840223032934 -5 0.137054443359375 5 Oxidation (M) _KM(Oxidation (M))WIGVRLRE_ REV__ENST00000427220.5_1_3:9852136-9852256:+|nuORF 3.3196427980023873 0.4577323075863651 2 QK{I|L}[R{M(Oxidation (M))|F}] 5 -1 14.693 0 0 1.1278 0 0 612.3119190049889 0 612.3119190049889 0 14.604093769761874 0 0 0 0 0 0 0 QK{I|L}[R{M(Oxidation (M))|F}] 1.1278 - 14 + NaN NaN 119252.4 NaN 9192 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12178 56.566 NaN 80557 35 0 18074 0.261 + 12176 KKKRALRRFLE 11 42 482.3112226577669 NaN 0 482.31103515625 PEAK HCD FTMS 0 0 0 12172 37916.546875 0.7772717132152998 3 -0.07780075073242188 6 Unmodified _KKKRALRRFLE_ ENSG00000178568|ENST00000342788|ERBB4;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000178568|Q15303-2|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-4|ERBB4 0.4545168274142398 0.3408308101233591 2 E 1 10 5.4846 0 0 0.56976 0 0 132.25793007940257 698.2829683893186 830.5408984687213 0 0 0 0 0 0 0 0 0 + E 0.56976 + + 4 + NaN NaN 106479.9 NaN 9193 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12179 56.57 NaN 198260 35 0 21809 0.261 -1 0 48 509.53623039728586 2034.1158157227435 4 509.7871398925781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 {I|L}Y 2 -1 25.969 0 0 1.2767 0 0 1739.9555969266692 0 1739.9555969266692 0 8.89075625191822 0 0 0 0.5 0 0 0 {I|L}Y 1.2767 - 11 NaN NaN 124803.7 NaN 9194 2983 12172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12181 56.574 NaN 751450 35 0 79689 0.327 -1 YGIIMNFSW 9 85 573.7656391822765 1145.5167254313528 2 573.764404296875 MULTI HCD FTMS 0 0 0 12180 307430.3125 0.04718915844653688 18 -0.49042510986328125 1 Oxidation (M) _YGIIM(Oxidation (M))NFSW_ ENSG00000174145|ENST00000309447|NWD2 25.399314129420986 0.14091189997036632 2 SSV[YT]SVSW 9 -1 66.486 0 0 5.804 0 0 131.0251495880404 0 131.0251495880404 0 59.038727145734015 0 0 0 2.9876954943324545 0 0.6421590589602533 0 SSV[YT]SVSW 5.804 - 2357 + NaN NaN 215437.7 NaN 9195 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12182 56.579 NaN 552960 35 0 52657 0.262 + 18271 MPDVDLHL 8 75 478.23139562648873 954.4482383197775 2 478.23126220703125 MULTI HCD FTMS 0 0 0 12180 229515.21875 0.2085467075600097 19 -0.5266075134277344 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 97.07464715276575 0.03528778528112001 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 66.411 0 0 6.9581 6.9581 87.422 0 0 0 4.406140654642826 4.406140654642826 4.406140654642826 4.406140654642826 0 2.305462187404089 0 1.555462187404089 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P][MT]H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L};{[ET]|[MV]}[QT]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L} 6.9581;6.4964;3.7488;1.8793;1.4523;0.61306 +;+;-;-;-;- + 264 NaN NaN 179218.3 NaN 9196 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12183 56.582 NaN 422220 35 0 22207 0.261 + 17844 MHSSIEAVSSM 11 84 589.7606137033783 1177.5066744735566 2 589.75927734375 MULTI HCD FTMS 0 0 0 12180 195763.328125 0.08865504536270578 18 -0.49042510986328125 3 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 32.78568957990786 0.18341249061758555 2 SVS{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 35.432 0 0 3.0091 0 0 668.2917347638687 0 668.2917347638687 0 12.996812376923046 0 0 0 1.1549471895720984 0 0.7059771852360797 0 SVS{[MS]|[{M(Oxidation (M))|F}A]} 3.0091 - 273 NaN NaN 158494.4 NaN 9197 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12184 56.586 NaN 385960 35 0 29698 0.261 + 25528 SFLADPDCVF 10 74 557.2488084088383 1112.4830638844765 2 557.2489624023438 MULTI HCD FTMS 0 0 0 12180 152475.65625 0.4249948543894562 4 -0.1105499267578125 4 Unmodified _SFLADPDCVF_ REV__ENSG00000244405|ENST00000306376|ETV5;REV__nc|ENSG00000244405|P41161-2|ETV5 6.2057823575117 0.44245551207394906 2 SA[C(Carbamidomethyl (C))Q]YGV{I|L}{[ES]|[DT]|[{I|L}C]} 10 -1 + 33.365 0 0 2.9991 2.9991 86.775 0 0 0 17.880325230808154 5.764837301042718 5.764837301042718 14.49092531119419 0 0 0 0 0 SA[C(Carbamidomethyl (C))Q]YGV{I|L}{[ES]|[DT]|[{I|L}C]};SA[C(Carbamidomethyl (C))Q][VG]Y{I|L}{[ES]|[DT]|[{I|L}C]};{[QG]|[NA]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YGV{I|L}{[ES]|[DT]|[{I|L}C]} 2.9991;1.6966;0.8246 -;-;- 561 + NaN NaN 148367.7 NaN 9198 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12185 56.589 NaN 396980 35 0 28794 0.261 + 13873 KYQAIGAYYI 10 64 595.3151579086372 1188.6157628840742 2 595.3164672851562 MULTI HCD FTMS 0 0 0 12180 153284.296875 1 0 0 5 Unmodified _KYQAIGAYYI_ ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1;PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant 43.85829265575387 0.11192494793849486 2 [YQ]KA{I|L}QYY{I|L} 9 4 + 60.64 0 0 5.1017 5.1017 84.94 0 0 0 3.65279269351241 30.718421963928435 3.65279269351241 6.020599913279625 0 1.774227503252014 0 0 0.3054621874040891 [YQ]KA{I|L}QYY{I|L};[YQ]KAQ{I|L}YY{I|L};[YQ]KA{I|L}[AG]YY{I|L};[YQ]KA[AG]{I|L}YY{I|L};[YQ]KS[KP]YY{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[SG]A{I|L}QYY{I|L};[YQ]KA{I|L}[DP]{[QN]|[E{I|L}]|[KN]}{I|L};[YQ]KA{I|L}[Y{M(Oxidation (M))|F}][SG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QS]|[NT]}{I|L}QYY{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KS]{I|L}QYY{I|L} 5.1017;4.5952;4.327;3.8205;3.0187;2.4077;1.9715;1.8234;1.8174;1.8174 -;-;-;-;-;-;-;-;-;- 299 NaN NaN 161740.3 NaN 9199 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12186 56.592 NaN 253590 35 0 40007 0.261 + 16733 LYANMFERL 9 64 586.7917627978626 1171.568972662525 2 586.7925415039062 MULTI HCD FTMS 0 0 0 12180 114767.3828125 0.19879323124963327 19 -0.5266075134277344 6 Oxidation (M) _LYANM(Oxidation (M))FERL_ ENSG00000004478|ENST00000001008|FKBP4 57.24910588100465 0.021429789259086996 2 {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L} 9 0 + 96.565 0 0 8.2423 8.2423 92.394 0 0 0 89.57502519061514 12.504311474114331 12.504311474114331 9.208187539523749 0 1.774227503252014 2 0.5 0.6989700043360187 + + {I|L}YAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}YAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};{I|L}Y[MN]S{M(Oxidation (M))|F}ER{I|L};{I|L}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]R{[YD]|[{M(Oxidation (M))|F}M]}NSE{I|L};{I|L}{M(Oxidation (M))|F}SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]R{[YD]|[{M(Oxidation (M))|F}M]}GGSE{I|L};{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}S{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]A[KQ]DC(Carbamidomethyl (C)){[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]A[KQ]D[CG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8.2423;7.4564;6.472;5.2778;4.8749;4.4918;4.0889;3.5075;2.693;1.907 +;-;-;-;-;-;-;-;-;- + 238 + NaN NaN 144802.5 NaN 9200 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12187 56.596 NaN 618030 35 0 169830 0.263 + 28601 TQHLLFHNQFI 11 77 466.58231692856305 1396.7251213858892 3 466.582275390625 MULTI HCD FTMS 0 0 0 12180 153302.140625 0.9810120545052413 6 -0.17250442504882812 7 Unmodified _TQHLLFHNQFI_ ENSG00000141446|ENST00000269214|ESCO1;nc|ENSG00000141446|Q5FWF5-2|ESCO1 6.623454094837244 0.3898724468670146 2 {[WN]|[YH]}{M(Oxidation (M))|F}[KQ]T{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}{M(Oxidation (M))|F} 11 9 + 51.96 0 0 3.7201 3.7201 87.498 0 0 0 8.187366058731094 24.635479511903604 8.187366058731094 15.250252499417321 0 1 1.3979400086720375 0.3807196863200844 0.3494850021680094 {[WN]|[YH]}{M(Oxidation (M))|F}[KQ]T{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}{M(Oxidation (M))|F};[{I|L}T]KDDKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}{M(Oxidation (M))|F};[KT]{I|L}DDKS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}{M(Oxidation (M))|F} 3.7201;2.6283;2.5022 -;-;- 618 NaN NaN 181451.7 NaN 9201 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12188 56.599 NaN 564470 35 0 60413 0.261 + 13974 KYSEVFEAI 9 76 543.2794262824139 1084.5442996316276 2 543.2793579101562 MULTI HCD FTMS 0 0 0 12180 172618.96875 0.21498162123133663 -4 0.10778045654296875 8 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 83.42873516780209 0.004742894019233849 2 [YK]SEV{M(Oxidation (M))|F}EA{I|L} 9 0 + 71.225 0 0 6.5673 6.5673 90.61 0 0 0 7.504311474114331 29.163413326259118 7.504311474114331 10.528419686577806 0 2.1989700043360187 0 0.6861818737241735 0.2742275032520141 + + [YK]SEV{M(Oxidation (M))|F}EA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};{[ET]|[MV]}T{M(Oxidation (M))|F}K{M(Oxidation (M))|F}EA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EKA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[YD]|[{M(Oxidation (M))|F}M]}KA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EAK{I|L};[{I|L}A]Y{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};[{M(Oxidation (M))|F}V]T{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[YD]|[{M(Oxidation (M))|F}M]}AK{I|L} 6.5673;5.5965;4.5563;4.2293;4.0669;4.0198;3.7683;3.7524;3.7524;3.6059 +;-;-;-;-;-;-;-;-;- + 1406 NaN NaN 174202.2 NaN 9202 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12189 56.602 NaN 150620 35 0 19758 0.261 + 31528 VYGFVREAL 9 52 527.290378953345 1052.56620497349 2 527.28955078125 MULTI HCD FTMS 0 0 0 12180 42847.58984375 0.07745844255256647 12 -0.3400421142578125 9 Unmodified _VYGFVREAL_ ENSG00000167671|ENST00000301281|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6 20.41453444215458 0.18397929046831515 2 [YV]G{M(Oxidation (M))|F}V 5 4 41.937 0 0 3.9843 0 0 0 484.25141321353755 484.25141321353755 27.957574905606748 0 0 0 0 0.75 2 0 0 + [YV]G{M(Oxidation (M))|F}V 3.9843 + + 24 + NaN NaN 122654 NaN 9203 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12190 56.606 NaN 127560 35 0 14507 0.261 + 30461 VLRRRRKKL 9 47 612.9271919558616 NaN 0 612.8416748046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _VLRRRRKKL_ ENSG00000121871|ENST00000475390|SLITRK3 0 0.29524684227089293 2 {I|L} 1 8 5.4846 0 0 0.44814 0 0 116.2941289294982 991.4448946588499 1107.7390235883481 0 0 0 0 0 0 0 0 0 + {I|L} 0.44814 + + 16 + NaN NaN 111666.5 NaN 9204 2984 12180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12192 56.611 NaN 9559500 35 0 1260200 0.327 + 19459 NPSVREFVL 9 113 530.7929050215179 1059.5712571098356 2 530.7935791015625 MULTI HCD FTMS 0 0 0 12191 6162393 0.31439920826654943 5 -0.13637542724609375 1 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 163.68669969883206 7.261465303366562E-09 2 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 108.64 0 0 10.253 10.253 97.655 0 0 0 25.33215838194242 16.478174818886373 16.478174818886373 25.33215838194242 0 2.4876954943324545 1.3979400086720375 1.3193415193665468 2.4071406706489746 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};{[NV]|[RG]}[PS]RE{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}[SG][VP]E{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NV{I|L};[YT]P[R{I|L}]SPN{I|L};[QT][PA]RE{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}T][HK]S[QT]V{I|L};[{M(Oxidation (M))|F}V]E[RV]SPN{I|L} 10.253;7.8624;6.9123;5.5497;4.0638;2.6725;2.4667;2.4173;2.3418;2.2748 +;+;-;-;-;-;-;-;-;- + 1738 NaN NaN 646685.8 NaN 9205 2985 12191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12193 56.615 NaN 6885600 35 0 1293300 0.22 + 13884 KYQEGLITL 9 113 532.8025151810507 1063.5904774289013 2 532.8026123046875 MULTI HCD FTMS 0 0 0 12191 5286364 1 0 0 2 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 152.88595553498965 5.775426743015152E-06 2 [YK]QEG{I|L}{I|L}T{I|L} 9 0 + 104.61 0 0 9.8352 9.8352 90.532 0 0 0 2.498774732165998 16.478174818886373 2.498774732165998 2.498774732165998 0 2.5994850021680094 0 1.372363747448347 1.5044321917401078 + + [YK]QEG{I|L}{I|L}T{I|L};{[HG]|PP}PQEG{I|L}{I|L}T{I|L};[YQ]KEG{I|L}{I|L}T{I|L};[YK][AG]EG{I|L}{I|L}T{I|L};[YK]QEG{I|L}T{I|L}{I|L};{[HG]|PP}PQEG{I|L}T{I|L}{I|L};{[HG]|PP}P[AG]EG{I|L}{I|L}T{I|L};[YQ]KEG{I|L}T{I|L}{I|L};[YK][AG]EG{I|L}T{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}G[YQ]K{I|L}T{I|L} 9.8352;9.6002;9.0617;8.9694;7.8521;7.6171;7.3241;7.0786;6.9863;6.5754 +;-;-;-;-;-;-;-;-;- + 6025 NaN NaN 866348.6 NaN 9206 2985 12191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12194 56.618 NaN 204840 35 0 10172 0.261 -1 0 52 514.1036140508972 3078.5780255057834 6 514.2855834960938 MULTI HCD FTMS 0 0 0 12191 31155.982421875 0.6224700911712676 4 -0.1035003662109375 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 0.50298 0 0 2913.4989219675003 0 2913.4989219675003 0 11.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50298 - 10 + NaN NaN 114598.5 NaN 9207 2985 12191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12195 56.621 NaN 167200 35 0 14994 0.261 -1 SFLMDHVF 8 58 506.23379151314765 1010.4530300930953 2 506.2339782714844 MULTI HCD FTMS 0 0 0 12191 24001.435546875 0.05547015602431614 -28 0.7409477233886719 4 Oxidation (M) _SFLM(Oxidation (M))DHVF_ ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3 9.347437153973935 0.5250182646323369 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 23.557 0 0 2.3313 0 0 0 660.2441427242078 660.2441427242078 0.5977185236079663 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.3313 + + 49 NaN NaN 111044.2 NaN 9208 2985 12191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12197 56.626 NaN 5431900 35 0 1081800 0.327 + 17496 LYTEKFEEF 9 101 603.2897475467253 NaN 0 603.2979736328125 PEAK HCD FTMS 0 0 0 12196 648437.3125 1 0 0 1 Unmodified _LYTEKFEEF_ ENSG00000084652|ENST00000373610|TXLNA 125.0377797344192 1.7149730839747356E-09 2 TY{I|L}{M(Oxidation (M))|F}QEP 7 6 28.88 0 0 2.3975 0 0 64.00801342205939 259.1085698958712 323.1165833179306 0 0 0 0 0 0.8252574989159953 0 1.2931576817365436 0 TY{I|L}{M(Oxidation (M))|F}QEP 2.3975 - 2898 + NaN NaN 543544.4 NaN 9209 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12198 56.631 NaN 2605500 35 0 447150 0.261 -1 DPRNATSVCI 10 118 566.7740010513621 1131.5334491695241 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12196 1376729.375 0.029515712842317722 21 -0.5864830017089844 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 39.94969957227396 0.1458432724694501 2 SP{M(Oxidation (M))|F}MGSVSW 9 -1 90.861 0 0 8.0299 0 0 135.09019204316263 0 135.09019204316263 0 69.93948990612887 0 0 0 2.774227503252014 0 1.7971062485323515 0 SP{M(Oxidation (M))|F}MGSVSW 8.0299 - 10464 + NaN NaN 488409 NaN 9210 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12199 56.634 NaN 629490 35 0 108990 0.261 + 5727 FPAGYMYPSM 10 81 598.2435232613002 1194.4724935894003 2 598.2439575195312 MULTI HCD FTMS 0 0 0 12196 249217.1875 0.7670928844210297 -30 0.7793731689453125 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 2 [YT]DR{M(Oxidation (M))|F}YPST 9 6 74.167 0 0 6.2092 0 0 0 60.97536003799215 60.97536003799215 50.86610056368244 0 0 0 0 1.805462187404089 2 0.805462187404089 0 [YT]DR{M(Oxidation (M))|F}YPST 6.2092 - 1133 NaN NaN 184867.6 NaN 9211 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12200 56.637 NaN 312470 35 0 22430 0.261 + 18156 MPDGQFKDISL 11 62 633.8053872185288 1265.5962215038576 2 633.8046264648438 MULTI HCD FTMS 0 0 0 12196 113077.234375 0.23462050021601336 8 -0.23614883422851562 4 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 62.78007862980855 0.028938133146045417 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L} 11 0 + 78.369 0 0 6.1923 6.1923 91.835 0 0 0 4.981979378655865 72.88448761687457 4.981979378655865 21.162520203572257 0 2.1549471895720984 0 1.5629529932484498 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[KG]A{[CT]|[{M(Oxidation (M))|F}G]}D{I|L}S{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[QG]|[NA]}{M(Oxidation (M))|F}K{[TV]|[{I|L}S]}D{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}D{[CT]|[{M(Oxidation (M))|F}G]}AYYS{I|L} 6.1923;4.5201;4.0492;2.1488 +;-;-;- + 310 NaN NaN 139099.9 NaN 9212 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12201 56.641 NaN 546410 35 0 102460 0.263 + 16086 LPSSFVEKL 9 74 510.29225724220424 1018.5699615512085 2 510.2923889160156 MULTI HCD FTMS 0 0 0 12196 219681.34375 0.3961694246016047 -5 0.13665008544921875 5 Unmodified _LPSSFVEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 114.18643581695662 0.002258955990713129 2 {I|L}PSS{M(Oxidation (M))|F}VEK{I|L} 9 0 + 109.43 0 0 10.744 10.744 97.247 0 0 0 76.19833987874749 9.137342758552691 9.137342758552691 18.79493455131808 0 2.805462187404089 1.6989700043360187 1.579689690656103 0 + + {I|L}PSS{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]SS{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]SS{M(Oxidation (M))|F}D{I|L}K{I|L};[{I|L}P]SS{M(Oxidation (M))|F}VSG{I|L}{I|L};[{I|L}P]SS{M(Oxidation (M))|F}DK{I|L}{I|L};[{I|L}P]S[YG]{I|L}EK{I|L};[{I|L}P][Y{I|L}]GSEK{I|L};[{I|L}P]S[YG]E{I|L}K{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}EK{I|L};{NN|[MP]|[D{I|L}]|[EV]}[VG]{M(Oxidation (M))|F}VEK{I|L} 10.744;8.8987;7.6201;7.118;6.5645;6.3634;6.1193;5.0848;4.7751;4.6341 +;+;-;-;-;-;-;-;-;- + 668 + NaN NaN 167895.9 NaN 9213 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12202 56.644 NaN 255550 35 0 44233 0.261 + 1043 AYGHFSYEF 9 54 560.7409475636375 1119.467342194075 2 560.7403564453125 MULTI HCD FTMS 0 0 0 12196 105753.2265625 0.046468287871597645 14 -0.38314056396484375 6 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 50.855029805455786 0.030374663808198754 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}YE{M(Oxidation (M))|F} 9 3 + 55.485 0 0 4.9564 4.9564 91.606 0 0 0 17.432562101416167 48.49514231574189 17.432562101416167 55.484842359102075 0 1.2887254899964358 1.6989700043360187 0.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[HG]|PP}YE{M(Oxidation (M))|F} 4.9564 - 39 NaN NaN 135227.6 NaN 9214 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12203 56.647 NaN 647550 35 0 64304 0.261 + 31470 VYEGITFEDF 10 78 610.2802010451928 1218.5458491571856 2 610.7960815429688 MULTI HCD FTMS 0 0 0 12196 43128.8671875 0.3861899523224095 6 -0.17710113525390625 7 Unmodified _VYEGITFEDF_ ENSG00000088992|ENST00000335209|TESC;nc|ENSG00000088992|Q96BS2-3|TESC 13.90604991867851 0.3810395177745597 2 [MN]YYNE 6 9 34.403 0 0 2.8232 0 0 0 401.2184237115844 401.2184237115844 -7.636080340528665 0 -7.636080340528665 0 0 0 0 0 1.0501648626366045 [MN]YYNE 2.8232 - 331 + NaN NaN 193971.9 NaN 9215 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12204 56.651 NaN 335190 35 0 32495 0.261 + 33627 YIVGHYLDV 9 74 539.7815755514866 1077.5485981697732 2 539.7815551757812 MULTI HCD FTMS 0 0 0 12196 64063.90625 1 0 0 8 Unmodified _YIVGHYLDV_ REV__ENSG00000247746|ENST00000500968|USP51 18.13498045792455 0.20367413111508956 2 [Y{I|L}]V 3 -1 34.934 0 0 3.242 0 0 0 699.3103800945167 699.3103800945167 11.121506059964545 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 [Y{I|L}]V 3.242 + + 134 NaN NaN 143249 NaN 9216 2986 12196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12206 56.656 NaN 492050 35 0 43338 0.327 + 8545 HALSLKIVL 9 70 497.3264750078222 992.6383970824444 2 497.3265075683594 MULTI HCD FTMS 0 0 0 12205 125695.234375 0.552380228449141 4 -0.11763763427734375 1 Unmodified _HALSLKIVL_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 55.50274090549119 0.023872834264864425 2 [HA]{I|L}S[K{I|L}]{I|L}V{I|L} 9 0 + 41.357 0 0 4.1664 4.1664 86.789 0 0 0 5.6424927368725974 24.701433032257807 5.6424927368725974 10.273109370204452 0 1.4194451763165201 0 0.6861818737241735 0 + + [HA]{I|L}S[K{I|L}]{I|L}V{I|L};[HA]{I|L}S[K{I|L}]V{I|L}{I|L};{[TV]|[{I|L}S]}[HA][K{I|L}]{I|L}V{I|L};{[TV]|[{I|L}S]}[HA][K{I|L}]V{I|L}{I|L};[{I|L}V]K[{I|L}T][HA]V{I|L};[{I|L}V]K[{I|L}T]V[HA]{I|L};[{I|L}V]K[{I|L}T]{[HG]|PP}{I|L}{I|L} 4.1664;3.1314;3.0842;2.0493;1.975;1.0377;0.94007 +;-;-;-;-;-;- + 259 NaN NaN 162791.1 NaN 9217 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12207 56.66 NaN 658740 35 0 52160 0.261 + -1 KCMQVYYDI 9 88 610.2802010451928 1218.5458491571856 2 610.7943725585938 MULTI HCD FTMS 0 0 0 12205 32019.18359375 0.28671021967061233 7 -0.20666885375976562 2 Carbamidomethyl (C) _KC(Carbamidomethyl (C))MQVYYDI_ REV__ENSG00000120833|ENST00000551556|SOCS2 11.640296217721598 0.25978676193971967 2 {NN|[MP]|[D{I|L}]|[EV]}Y[KQ]YEN{M(Oxidation (M))|F} 9 -1 + 45.767 0 0 3.7558 3.7558 85.326 0 0 0 6.191826065606932 1.6681770962370024 1.6681770962370024 9.208187539523749 0 0.3252574989159953 1.6989700043360187 0 1.1421590589602533 {NN|[MP]|[D{I|L}]|[EV]}Y[KQ]YEN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y[KQ]YEGG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y[KQ]YTAA{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[KQ]YEN{M(Oxidation (M))|F};[MN]YY[KQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YV][RN]NYY{NN|[MP]|[D{I|L}]|[EV]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[KQ]YEGG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[KQ]YTAA{M(Oxidation (M))|F};[YV][RN]GGYY{NN|[MP]|[D{I|L}]|[EV]};{NN|[MP]|[D{I|L}]|[EV]}Y{[DA]|[EG]}[H{I|L}]EP{M(Oxidation (M))|F} 3.7558;3.0002;3.0002;2.2266;2.0679;2.0606;1.4709;1.4709;1.305;1.2274 -;-;-;-;-;-;-;-;-;- 327 NaN NaN 186149.6 NaN 9218 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12208 56.664 NaN 307640 35 0 20550 0.261 + 18157 MPDGQFKDISL 11 68 633.8053872185288 1265.5962215038576 2 634.3072509765625 MULTI HCD FTMS 0 0 0 12205 89739.6796875 0.34382502394151043 10 -0.2818183898925781 3 Oxidation (M) _M(Oxidation (M))PDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 43.476825903602695 0.1145582081028919 2 {M(Oxidation (M))|F}KD{I|L}S{I|L} 6 5 57.428 0 0 4.5376 0 0 544.1937574032319 0 544.1937574032319 0 45.733134811479204 0 0 0 1.2302046884880937 0 0.6989700043360187 0 + {M(Oxidation (M))|F}KD{I|L}S{I|L} 4.5376 + + 122 NaN NaN 138991.5 NaN 9219 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12209 56.667 NaN 259300 35 0 69362 0.261 -1 MFCAMVITI 9 63 559.2586845032176 1116.5028160732352 2 559.2592163085938 MULTI HCD FTMS 0 0 0 12205 95063.0234375 0.8008015210406677 1 -0.02945709228515625 4 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))FC(Carbamidomethyl (C))AM(Oxidation (M))VITI_ ENSG00000102195|ENST00000218316|GPR50 4.75600775471527 0.31496297302216103 2 {I|L}N{M(Oxidation (M))|F} 3 -1 17.792 0 0 1.5935 0 0 724.3478871076187 0 724.3478871076187 0 3.5269096271984086 0 0 0 0 0 0 0 {I|L}N{M(Oxidation (M))|F} 1.5935 - 63 NaN NaN 123148.3 NaN 9220 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12210 56.67 NaN 330290 35 0 29249 0.261 + 33628 YIVGHYLDV 9 70 539.7815755514866 1077.5485981697732 2 539.792724609375 MULTI HCD FTMS 0 0 0 12205 56945.03125 0.8888785368126065 1 -0.02945709228515625 5 Unmodified _YIVGHYLDV_ REV__ENSG00000247746|ENST00000500968|USP51 18.13498045792455 0.20367413111508956 2 [Y{I|L}]V 3 -1 34.934 0 0 3.242 0 0 0 699.3098701687421 699.3098701687421 11.121506059964545 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 [Y{I|L}]V 3.242 + + 206 NaN NaN 133328.2 NaN 9221 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12211 56.674 NaN 223800 35 0 13510 0.261 + 1112 AYIQESATF 9 60 515.248292392616 1028.482031852032 2 515.2483520507812 MULTI HCD FTMS 0 0 0 12205 84175.9453125 1 0 0 6 Unmodified _AYIQESATF_ ENSG00000116688|ENST00000235329|MFN2;ENST00000497302.1_1_1:12042112-12052340:+|nuORF 99.75527289724121 0.004270341300239591 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QESAT{M(Oxidation (M))|F} 9 0 + 101.18 0 0 9.8379 9.8379 95.817 0 0 0 20.87128018967597 94.19138127225978 20.87128018967597 13.015384402724592 0 2.805462187404089 1.5228787452803376 0.4247425010840047 0.3807196863200844 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QESAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]ESAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]E[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA][TP]SAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]EQVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]EQ{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]E[VG]AT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]E[AG]VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA]E[AG]{I|L}S{M(Oxidation (M))|F} 9.8379;8.5724;7.8722;6.6067;5.7217;4.8676;4.8453;4.3078;3.6021;3.5798 +;-;-;-;-;-;-;-;-;- + 298 NaN NaN 132610.2 NaN 9222 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12212 56.677 NaN 313740 35 0 13490 0.261 + 24881 RYQGVNLYI 9 62 563.3065776572029 1124.5986023812056 2 563.3067016601562 MULTI HCD FTMS 0 0 0 12205 61702.2109375 0.29643222876349523 7 -0.20666885375976562 7 Unmodified _RYQGVNLYI_ ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4 15.847184025352803 0.2234401846867398 2 Y{I|L} 2 7 22.959 0 0 2.0415 0 0 830.4405209985417 0 830.4405209985417 0 13.667053245199625 0 0 0 0.5 0 0 0 + Y{I|L} 2.0415 + + 24 NaN NaN 144267.5 NaN 9223 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12213 56.68 NaN 134910 35 0 8463.9 0.261 -1 PCCCCYCCF 9 32 636.6755981445312 NaN 0 636.6755981445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 4 Carbamidomethyl (C) _PC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))YCCF_ ENST00000220931.10_1_8:102803112-102803181:-|nuORF 0 0.29524684227089293 2 A 1 -1 2.7642 0 0 0.21743 0 0 520.0966701154313 677.1876925104124 1197.2843626258436 0 0 0 0 0 0 0 0 0 A 0.21743 - 1 + NaN NaN 107655.1 NaN 9224 2987 12205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12215 56.685 NaN 2424900 35 0 388290 0.327 + 15809 LPHTDFTL 8 111 472.24783609818707 942.4811192631742 2 472.2477722167969 MULTI HCD FTMS 0 0 0 12214 2319577.25 1 0 0 1 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 93.88341677533236 0.03025875853923581 2 [{I|L}P]HES{M(Oxidation (M))|F}T{I|L} 8 2 + 75.629 0 0 8.0244 8.0244 93.806 0 0 0 21.479400086720375 16.40978057358332 16.40978057358332 12.958248768983331 0 1.274227503252014 1.6989700043360187 0.9802046884880937 0 [{I|L}P]HES{M(Oxidation (M))|F}T{I|L};[{I|L}P]HEST{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}T{I|L};[{I|L}T]{M(Oxidation (M))|F}DTHP{I|L};[{I|L}P]HES{I|L}T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}HP{I|L}{M(Oxidation (M))|F}T{I|L};[HT]DP{I|L}{M(Oxidation (M))|F}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EST{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]DHP{I|L}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ETHP{I|L} 8.0244;6.6495;5.7454;4.6303;4.6138;4.5734;4.4266;4.3705;4.1524;3.975 -;-;-;-;-;-;-;-;-;- 2626 NaN NaN 466183.2 NaN 9225 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12216 56.689 NaN 3065600 35 0 639600 0.231 + 17497 LYTEKFEEF 9 106 603.2897475467253 NaN 0 603.3012084960938 PEAK HCD FTMS 0 0 0 12214 351027.34375 0.5413435300270448 2 -0.061954498291015625 2 Unmodified _LYTEKFEEF_ ENSG00000084652|ENST00000373610|TXLNA 96.93554129104106 4.381645330502557E-05 2 TPP{M(Oxidation (M))|F}H[PS]T 8 8 24.779 0 0 2.0571 0 0 64.00511961095692 273.12415878948264 337.12927840043955 0 0 0 0 0 0.805462187404089 0 1.3807196863200843 0 TPP{M(Oxidation (M))|F}H[PS]T 2.0571 - 1984 + NaN NaN 463383.6 NaN 9226 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12217 56.693 NaN 787810 35 0 96482 0.261 + 26190 SPQEFIHEL 9 90 550.2741518397482 1098.5337507462964 2 550.7940673828125 MULTI HCD FTMS 0 0 0 12214 27965.30078125 0.8711943369277777 -3 0.07442092895507812 3 Unmodified _SPQEFIHEL_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 37.07464296494664 0.07877380486334713 2 [Y{I|L}]V{M(Oxidation (M))|F}VNAK 8 8 62.785 0 0 5.7153 0 0 0 161.01512158668052 161.01512158668052 13.832946754800375 0 0 0 0 0 2 0 1.066901560044258 [Y{I|L}]V{M(Oxidation (M))|F}VNAK 5.7153 - 1078 NaN NaN 218141.2 NaN 9227 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12218 56.696 NaN 380550 35 0 60401 0.261 + 26924 SYLEKQVVTF 10 69 607.3265539315926 1212.638554929985 2 607.32666015625 MULTI HCD FTMS 0 0 0 12214 224579.640625 0.891904653162942 2 -0.061954498291015625 4 Unmodified _SYLEKQVVTF_ ENSG00000018699|ENST00000317907|TTC27 74.7717668357584 0.011931216566250815 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EKQVVT{M(Oxidation (M))|F} 10 0 + 80.641 0 0 6.6501 6.6501 87.473 0 0 0 5.764837301042718 75.0679783892874 5.764837301042718 6.00833760139686 0 2.6989700043360187 0 0.6307196863200843 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EKQVVT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YEKQVVT{M(Oxidation (M))|F};[YT]VEKQVVT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EK[AG]VVT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EKQVTV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YEK[AG]VVT{M(Oxidation (M))|F};[YT]VEK[AG]VVT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YEKQVTV{M(Oxidation (M))|F};[YT]VEKQVTV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EK[AG]VTV{M(Oxidation (M))|F} 6.6501;6.1546;6.0516;5.8943;5.6613;5.3988;5.2958;5.1659;5.0628;4.9056 +;-;-;-;-;-;-;-;-;- + 1242 NaN NaN 141507 NaN 9228 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12219 56.699 NaN 863430 35 0 76094 0.261 + 24361 RYIFAKNLF 9 93 586.3346997694536 1170.654846605707 2 586.3350830078125 MULTI HCD FTMS 0 0 0 12214 301869.28125 0.45438679246614305 -4 0.1105499267578125 5 Unmodified _RYIFAKNLF_ ENSG00000114956|ENST00000264093|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK 81.89019881105858 0.005240739447516426 2 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F} 10 5 + 95.423 0 0 8.1512 8.1512 91.439 0 0 0 13.1389542347287 16.53212513775344 13.1389542347287 9.164539485499247 0 0.9456290139465235 2 0.3494850021680094 1.8807196863200843 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KAHSKGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]R{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HS]AKN{I|L}{M(Oxidation (M))|F};[Y{I|L}]R{M(Oxidation (M))|F}AKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HS]AKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[Y{I|L}]KN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KA[PG]VVN{I|L}{M(Oxidation (M))|F};[YR]{I|L}{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[QP]VVN{I|L}{M(Oxidation (M))|F} 8.1512;7.3684;7.0289;6.9936;6.2423;6.2107;5.9862;5.655;5.6032;5.3298 -;-;-;-;-;-;-;-;+;- + 1270 NaN NaN 212348.6 NaN 9229 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12220 56.703 NaN 153800 35 0 7791.5 0.261 + 22219 QLTVVPGWF 9 52 523.7886385052598 NaN 0 523.7985229492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QLTVVPGWF_ REV__ENSG00000077254|ENST00000370794|USP33;REV__ENST00000461986.5_1_1:78183501-78187881:-|nuORF;REV__FUBP1-USP33|2|fusion;REV__FUBP1-USP33|3|fusion;REV__FUBP1-USP33|4|fusion;REV__FUBP1-USP33|5|fusion;REV__nc|ENSG00000077254|Q8TEY7-3|USP33;REV__nc|ENSG00000077254|Q8TEY7|USP33 8.593279151180031 0.2536050107310812 2 VP 2 -1 6.4537 0 0 0.61724 0 0 146.08751763376318 700.3337496393186 846.4212672730819 0 0 0 0 0 0 0 0 0 VP 0.61724 + + 6 + NaN NaN 106719.4 NaN 9230 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12221 56.706 NaN 110540 35 0 3939.3 0.261 + 2157 DHIRRTMYW 9 42 639.31201171875 NaN 0 639.31201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _DHIRRTMYW_ ENSG00000087303|ENST00000216286|NID2;nc|ENSG00000087303|Q14112-2|NID2 1.844237919475145 0.28630992268396543 2 Y 1 8 5.4846 0 0 0.42996 0 0 362.2833636701187 747.2402437799436 1109.5236074500624 0 0 0 0 0 0 0 0 0 + Y 0.42996 + + 4 + NaN NaN 103129.7 NaN 9231 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12222 56.709 NaN 163980 35 0 10254 0.264 -1 0 64 453.88042653904404 1358.619450217332 3 454.215087890625 MULTI HCD FTMS 0 0 0 12214 34169.90234375 0.10108011516865176 -12 0.3294944763183594 8 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 15.573 0 0 1.1463 0 0 1080.4548822015101 0 1080.4548822015101 0 2.078343878162343 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.1463 - 38 + NaN NaN 116848.6 NaN 9232 2988 12214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12224 56.714 NaN 1769500 35 0 178260 0.327 + 22853 QYMERLQLL 9 105 605.3181048290442 1208.6216567248882 2 605.3187255859375 MULTI HCD FTMS 0 0 0 12223 788562.125 0.8837433247298425 -2 0.058536529541015625 1 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 125.52916310638031 0.0008761121089336018 2 [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L} 9 0 + 67.013 0 0 5.5446 5.5446 88.435 0 0 0 3.6253652382153376 35.83569779738869 3.6253652382153376 9.208187539523756 0 2.341129063296272 0 0.9604093769761877 2.5 + + [YQ]{M(Oxidation (M))|F}ER{I|L}Q{I|L}{I|L};[YQ]{M(Oxidation (M))|F}ER{I|L}[AG]{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}]Q{I|L}{I|L};[Q{I|L}]RE[Y{M(Oxidation (M))|F}][AG]{I|L}{I|L};[Q{I|L}]RE{[YC]|[HE]}[TA]{I|L}{I|L} 5.5446;4.7827;3.0902;2.3283;0.84874 +;-;-;-;- + 965 NaN NaN 373026.8 NaN 9233 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12225 56.719 NaN 844940 35 0 72937 0.261 + 4006 ERNLAEQSSM 10 95 582.769221728906 1163.523890524612 2 582.769775390625 MULTI HCD FTMS 0 0 0 12223 488493.3125 0.05053040192649148 24 -0.6220855712890625 2 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 22.736283301280096 0.29844449404982915 2 SVS[YT]VSW 8 -1 67.191 0 0 5.7748 0 0 236.07837471334727 0 236.07837471334727 0 52.340868500181585 0 0 0 2.603917193908117 0 1.079689690656103 0 SVS[YT]VSW 5.7748 - 2282 + NaN NaN 218155.6 NaN 9234 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12226 56.722 NaN 600290 35 0 56311 0.261 -1 IETHGMAVSW 10 81 573.7656391822765 1145.5167254313528 2 573.764892578125 MULTI HCD FTMS 0 0 0 12223 221900.90625 0.03406078255364417 23 -0.6025390625 3 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 29.081581746732265 0.240155558137004 2 SVSW 4 -1 52.295 0 0 4.5652 0 0 668.292772361525 0 668.292772361525 0 19.51544993495972 0 0 0 1.6549471895720984 0 0.3807196863200844 0 SVSW 4.5652 - 1047 NaN NaN 185082.8 NaN 9235 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12227 56.725 NaN 363030 35 0 41130 0.263 + 2408 DPMRLQKIRF 10 69 435.2483503465838 1302.7232216399514 3 435.2484130859375 MULTI HCD FTMS 0 0 0 12223 169745.984375 0.8170591147680084 1 -0.03287506103515625 4 Unmodified _DPMRLQKIRF_ ENSG00000173928|ENST00000674460|SWSAP1;nc|ENSG00000173928|Q6NVH7|SWSAP1 13.51866281300042 0.3846630060559883 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 7 4 35.883 0 0 2.7545 0 0 318.1693640949483 0 318.1693640949483 0 31.903594939066053 0 0 0 0.6989700043360187 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 2.7545 - 125 + NaN NaN 141949.7 NaN 9236 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12228 56.729 NaN 1125700 35 0 330850 0.261 + 2824 DYLEKYYKF 9 78 423.54471134545656 1267.6123046365697 3 423.54486083984375 MULTI HCD FTMS 0 0 0 12223 279970.4375 0.43980586804214766 -2 0.058536529541015625 5 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 89.40071534611396 0.0045416704840156395 2 DY{I|L}EKYYK{M(Oxidation (M))|F} 9 0 + 104.86 0 0 8.272 8.272 96.312 0 0 0 89.37253903386872 14.670692010038763 14.670692010038763 32.95880017344075 0 1.6861818737241734 2 0.805462187404089 0 + + DY{I|L}EKYYK{M(Oxidation (M))|F};DY{I|L}[{M(Oxidation (M))|F}V]{[CA]|SS}YK{M(Oxidation (M))|F} 8.272;5.6719 +;- + 410 + NaN NaN 262460.4 NaN 9237 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12229 56.732 NaN 166280 35 0 38632 0.261 + 1126 AYLAQSPQL 9 46 495.7663476422717 989.5181423513434 2 495.76666259765625 MULTI HCD FTMS 0 0 0 12223 68800.03125 0.6112073178273139 2 -0.059101104736328125 6 Unmodified _AYLAQSPQL_ ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1 29.84058131909904 0.11198220037953927 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AQS[QP]{I|L} 9 0 + 50.908 0 0 5.1447 5.1447 87.165 0 0 0 7.147642715192504 25.691446804494902 7.147642715192504 9.208187539523749 0 1.805462187404089 0 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AQS[QP]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[AG]S[QP]{I|L} 5.1447;4.2142 +;- + 71 NaN NaN 124086.6 NaN 9238 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12230 56.735 NaN 365850 35 0 24198 0.261 + 6238 FPETTEEEL 9 64 547.7481962686063 1093.4818396040125 2 547.7630615234375 MULTI HCD FTMS 0 0 0 12223 23789.53125 0.36561515458762633 6 -0.18093109130859375 7 Unmodified _FPETTEEEL_ ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP 30.636539890814138 0.10832830463492794 2 V[R{M(Oxidation (M))|F}]VYV{M(Oxidation (M))|F} 7 9 36.643 0 0 3.351 0 0 165.0141732887468 0 165.0141732887468 0 8.098491495578415 0 0 0 0 0 0 0.7302046884880937 V[R{M(Oxidation (M))|F}]VYV{M(Oxidation (M))|F} 3.351 - 230 + NaN NaN 162394.6 NaN 9239 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12231 56.739 NaN 244720 35 0 37753 0.261 + 8188 GQEQDELSF 9 61 526.7304141389923 1051.4462753447845 2 526.730712890625 MULTI HCD FTMS 0 0 0 12223 70363.8125 0.5459725545763842 -2 0.058536529541015625 8 Unmodified _GQEQDELSF_ ENSG00000124507|ENST00000244458|PACSIN1 36.12702656103203 0.08312389501731911 2 {I|L}S{M(Oxidation (M))|F} 3 6 45.445 0 0 4.3222 0 0 686.2495594709 0 686.2495594709 0 33.30530004019302 0 0 0 1.5 0 0.4247425010840047 0 + {I|L}S{M(Oxidation (M))|F} 4.3222 + + 92 NaN NaN 153406.2 NaN 9240 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12232 56.742 NaN 161000 35 0 76574 0.261 + -1 CHNCDCDCGC 10 50 448.11609959992757 NaN 0 448.11639404296875 PEAK HCD FTMS 0 0 0 12223 21711.708984375 0.36349734145607887 18 -0.49846649169921875 9 Acetyl (Protein N-term),4 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))HNC(Carbamidomethyl (C))DC(Carbamidomethyl (C))DC(Carbamidomethyl (C))GC_ REV__ENST00000451025.6_2_6:43608345-43608465:+|nuORF 0 0.34018428902965525 2 {I|L} 1 -1 2.4743 0 0 0.27669 0 0 225.83319910044264 552.2846163385374 778.11781543898 0 0 0 0 0 0 0 0 0 {I|L} 0.27669 - 2 + NaN NaN 110923.2 NaN 9241 2989 12223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12234 56.747 NaN 1108800 35 0 162280 0.327 + 13975 KYSEVFEAI 9 74 543.2794262824139 1084.5442996316276 2 543.2794799804688 MULTI HCD FTMS 0 0 0 12233 724356.75 0.9021221108694754 2 -0.056209564208984375 1 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 100.0907132914201 0.004261551473353346 2 [YK]SEV{M(Oxidation (M))|F}EA{I|L} 9 0 + 83.14 0 0 7.6659 7.6659 95.096 0 0 0 3.65279269351241 33.953650195120844 3.65279269351241 28.69448070049671 0 2.6237125054200234 0 1.4049471895720984 0 + + [YK]SEV{M(Oxidation (M))|F}EA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}KEA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EKA{I|L};{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EAK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L};[{M(Oxidation (M))|F}E]A{I|L}DSYK{I|L};[{M(Oxidation (M))|F}E]AVESYK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}EA{I|L}K;{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}KA{I|L} 7.6659;5.0201;3.9816;3.6247;3.5206;3.3372;3.3138;3.2244;3.2025;3.0954 +;-;-;-;-;-;-;-;-;- + 1585 NaN NaN 255864.2 NaN 9242 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12235 56.751 NaN 376150 35 0 33223 0.261 + 18272 MPDVDLHL 8 75 478.23139562648873 954.4482383197775 2 478.231201171875 MULTI HCD FTMS 0 0 0 12233 161377.21875 0.14663379547899355 25 -0.6384048461914062 2 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 97.07464715276575 0.03528778528112001 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L} 8 0 + 78.926 0 0 8.2693 8.2693 95.268 0 0 0 19.605319037595876 16.40978057358332 16.40978057358332 19.605319037595876 0 2.305462187404089 1.0969100130080565 1.579689690656103 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DVD{I|L}H{I|L};{M(Oxidation (M))|F}PDVD{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[KS]{[{M(Oxidation (M))|F}C]|[YS]}N{I|L} 8.2693;6.2152;3.4675;2.1847 +;+;-;- + 179 NaN NaN 141135.3 NaN 9243 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12236 56.755 NaN 508110 35 0 26624 0.261 + 2826 DYLEKYYKF 9 76 634.8134228132777 1267.6122926933554 2 634.8132934570312 MULTI HCD FTMS 0 0 0 12233 207490.984375 0.8109379148756658 -1 0.03287506103515625 3 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 69.33821966488729 0.009302356455414924 2 DY{I|L}EKYYK{M(Oxidation (M))|F} 9 0 + 88.031 0 0 6.9446 6.9446 88.269 0 0 0 52.69077524932107 6.267186419914097 6.267186419914097 6.593793813122062 0 2.548455006504028 2 0.3494850021680094 0 + + DY{I|L}EKYYK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EKYYK{M(Oxidation (M))|F};DY{I|L}EKY[HT]{[TV]|[{I|L}S]};[YK]YE{I|L}DYK{M(Oxidation (M))|F};YYKE{I|L}DYK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YYKDYK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}KYYK{M(Oxidation (M))|F};[MT][C(Carbamidomethyl (C))K]KYYK{M(Oxidation (M))|F};[YK]YKE{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F};YYKKE{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F} 6.9446;6.4244;5.6074;3.5089;3.5089;2.8407;2.7365;2.5615;2.2778;2.2778 +;+;-;-;-;-;-;-;-;- + 1063 + NaN NaN 176307.3 NaN 9244 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12237 56.758 NaN 280380 35 0 14822 0.261 + 17845 MHSSIEAVSSM 11 72 589.7606137033783 1177.5066744735566 2 589.759033203125 MULTI HCD FTMS 0 0 0 12233 93419.2109375 0.04230661821464291 24 -0.6088485717773438 4 Unmodified _MHSSIEAVSSM_ REV__ENSG00000160299|ENST00000359568|PCNT;REV__nc|ENSG00000160299|O95613-2|PCNT;REV__PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant 21.536976647645854 0.2694300281126922 2 VS{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 28.06 0 0 2.383 0 0 755.3227406232437 0 755.3227406232437 0 7.557809497117844 0 0 0 0.805462187404089 0 0.3807196863200844 0 VS{[MS]|[{M(Oxidation (M))|F}A]} 2.383 + + 73 NaN NaN 135850.3 NaN 9245 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12238 56.762 NaN 417650 35 0 30012 0.261 + -1 ERGYLCFEL 9 69 593.7820593582654 1185.5495657833308 2 593.7815551757812 MULTI HCD FTMS 0 0 0 12233 98224.40625 0.7403267849315549 -6 0.17250442504882812 5 Carbamidomethyl (C) _ERGYLC(Carbamidomethyl (C))FEL_ REV__ENSG00000134243|ENST00000256637|SORT1;REV__nc|ENSG00000134243|Q99523-2|SORT1 18.1463463914782 0.20357593197100715 2 NVE{I|L} 4 -1 43.488 0 0 3.6681 0 0 712.2963734357437 0 712.2963734357437 0 34.02372200412145 0 0 0 0.3807196863200844 0 0 0.7742275032520141 NVE{I|L} 3.6681 - 116 NaN NaN 143225.5 NaN 9246 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12239 56.765 NaN 501650 35 0 59221 0.263 + 13376 KYNDTFWKEF 10 60 459.8873073017674 1376.6400925055023 3 459.8872985839844 MULTI HCD FTMS 0 0 0 12233 98481.2421875 0.3983809341954007 -4 0.12089157104492188 6 Unmodified _KYNDTFWKEF_ ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P 25.154963734998336 0.2758209733398202 2 T{M(Oxidation (M))|F}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 6 4 52.382 0 0 3.8051 0 0 520.2276478498062 0 520.2276478498062 0 46.897737521010825 0 0 0 2 0 1.1747425010840047 0 + T{M(Oxidation (M))|F}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F} 3.8051 + + 96 NaN NaN 174594.6 NaN 9247 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12240 56.768 NaN 216900 35 0 14672 0.261 + 8920 HPDIFIEHF 9 65 577.7852170171149 1153.5558811010296 2 577.7855224609375 MULTI HCD FTMS 0 0 0 12233 64940.65234375 0.7230239146469601 -2 0.061954498291015625 7 Unmodified _HPDIFIEHF_ ENSG00000121690|ENST00000241051|DEPDC7;nc|ENSG00000121690|Q96QD5-2|DEPDC7 39.957323273324995 0.06554068735427583 2 HPD 3 6 28.812 0 0 2.4977 0 0 0 801.3934850573671 801.3934850573671 6.020599913279625 0 0 0 0 0.5 0 0 0 + HPD 2.4977 + + 38 + NaN NaN 120985.7 NaN 9248 2990 12233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12242 56.773 NaN 1900300 35 0 350980 0.327 + 13885 KYQEGLITL 9 108 532.8025151810507 1063.5904774289013 2 532.8031005859375 MULTI HCD FTMS 0 0 0 12241 1187044.25 0.22454833795024332 6 -0.16418075561523438 1 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 117.76058876431921 0.001675465467887476 2 [YK]QEG{I|L}{I|L}T{I|L} 9 0 + 93.369 0 0 8.7786 8.7786 90.635 0 0 0 5.228787452803374 16.478174818886373 5.228787452803374 5.228787452803374 0 2.5228787452803374 0 1.079689690656103 0.75 + + [YK]QEG{I|L}{I|L}T{I|L};{[HG]|PP}PQEG{I|L}{I|L}T{I|L};[YK][AG]EG{I|L}{I|L}T{I|L};[YK]QEG{I|L}T{I|L}{I|L};{[HG]|PP}P[AG]EG{I|L}{I|L}T{I|L};{[HG]|PP}PQEG{I|L}T{I|L}{I|L};[YK][AG]EG{I|L}T{I|L}{I|L};[{M(Oxidation (M))|F}V]Q{[CA]|SS}G{I|L}{I|L}T{I|L};{[HG]|PP}P[AG]EG{I|L}T{I|L}{I|L};[{I|L}T][TP][YQ]KT{I|L} 8.7786;8.287;7.9129;6.7302;6.7202;6.2386;5.8645;5.1403;4.9776;4.3232 +;-;-;-;-;-;-;-;-;- + 2265 NaN NaN 376014.8 NaN 9249 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12243 56.778 NaN 2042000 35 0 348800 0.261 -1 DPRNATSVCI 10 110 566.7740010513621 1131.5334491695241 2 566.7749633789062 MULTI HCD FTMS 0 0 0 12241 1046671.8125 0.02243960593773066 26 -0.6780014038085938 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 2 PAP{M(Oxidation (M))|F}STSVSW 10 -1 96.024 0 0 8.4862 0 0 54.034785287740824 0 54.034785287740824 0 68.72079946484492 0 0 0 2.805462187404089 0 2.103917193908117 0 PAP{M(Oxidation (M))|F}STSVSW 8.4862 - 9074 + NaN NaN 398225.4 NaN 9250 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12244 56.781 NaN 665010 35 0 99863 0.261 + 5728 FPAGYMYPSM 10 85 598.2435232613002 1194.4724935894003 2 598.24365234375 MULTI HCD FTMS 0 0 0 12241 274385.4375 0.8445609984062644 -25 0.6705474853515625 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 2 [YT]DR{M(Oxidation (M))|F}YPST 9 6 68.176 0 0 5.7076 0 0 0 60.97789565356485 60.97789565356485 44.018929852098466 0 0 0 0 1.8494850021680094 1.5228787452803376 0.7134679910804405 0 [YT]DR{M(Oxidation (M))|F}YPST 5.7076 - 678 NaN NaN 190681.1 NaN 9251 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12245 56.785 NaN 663640 35 0 58983 0.261 -1 YVTVSLYTM 9 99 546.7679469122274 NaN 0 546.779296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YVTVSLYTM(Oxidation (M))_ ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2 18.13498045792455 0.19991664011725976 2 A 1 -1 10.797 0 0 0.98916 0 0 855.4055247064877 162.05600916080314 1017.4615338672908 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.98916 - 327 + NaN NaN 199862.9 NaN 9252 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12246 56.788 NaN 408460 35 0 28761 0.261 + 10931 IYAPKLQEF 9 80 554.805376942092 1107.596200950984 2 554.8060913085938 MULTI HCD FTMS 0 0 0 12241 63859.5703125 0.7012906488231325 1 -0.0299835205078125 5 Unmodified _IYAPKLQEF_ ENSG00000175305|ENST00000308108|CCNE2 27.628801355627647 0.12213550946336599 2 {I|L}YA 3 6 45.406 0 0 4.0995 0 0 0 757.3879878416748 757.3879878416748 22.134928107446186 0 0 0 0 1 1.6989700043360187 0 0 + {I|L}YA 4.0995 + + 383 + NaN NaN 144548.9 NaN 9253 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12247 56.791 NaN 982060 35 0 186120 0.261 + 8424 GYSEHFVEF 9 71 557.7454155041603 1113.4762780751205 2 557.7462158203125 MULTI HCD FTMS 0 0 0 12241 295101.1875 0.0730545046053117 -5 0.14711761474609375 6 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 88.90359156742426 0.00455469703666567 2 {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4 5 46.983 0 0 4.2194 0 0 573.218209361798 0 573.218209361798 0 9.987737688117235 0 0 0 1.2302046884880937 0 0.4247425010840047 0 + {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4.2194 + + 151 NaN NaN 242753.8 NaN 9254 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12248 56.798 NaN 244210 35 0 19738 0.261 + 34334 YPEDVSEEL 9 71 540.7401310059117 1079.4657090786234 2 540.7404174804688 MULTI HCD FTMS 0 0 0 12241 54885.9453125 0.7471084035486527 -1 0.026226043701171875 7 Unmodified _YPEDVSEEL_ ENSG00000147065|ENST00000360270|MSN 30.636539890814138 0.10832830463492794 2 SEE{I|L} 4 5 40.222 0 0 3.7261 0 0 603.2533755682458 0 603.2533755682458 0 32.774334638038454 0 0 0 1.305462187404089 0 0 0 + SEE{I|L} 3.7261 + + 178 NaN NaN 124041 NaN 9255 2991 12241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12250 56.803 NaN 1992900 35 0 263580 0.327 + 19460 NPSVREFVL 9 106 530.7929050215179 1059.5712571098356 2 530.7932739257812 MULTI HCD FTMS 0 0 0 12249 953482.8125 0.04864575195800768 12 -0.3240852355957031 1 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 107.09958533191995 0.0034159042678574016 2 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 83.894 0 0 7.9177 7.9177 94.588 0 0 0 18.127406662137417 16.478174818886387 16.478174818886387 18.127406662137417 0 2.10697580801237 1.3010299956639813 0.6203715150305281 1.9049471895720984 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};NPSVRE{M(Oxidation (M))|F}V{I|L};[NP]SVRV[{M(Oxidation (M))|F}E]{I|L};{[NV]|[RG]}[SG][VP]E{M(Oxidation (M))|F}V{I|L};[YT]P[R{I|L}]SPN{I|L};{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NV{I|L};[{M(Oxidation (M))|F}V]E[RV]SPN{I|L};[{M(Oxidation (M))|F}E]V[RV]SPN{I|L};{[NV]|[RG]}[SG]R[C(Carbamidomethyl (C))R]V{I|L};{[NV]|[RG]}[QA][VG]N{M(Oxidation (M))|F}V{I|L} 7.9177;6.2069;4.448;3.2508;2.4655;2.3389;2.2736;1.9895;1.9369;1.7053 +;+;-;-;-;-;-;-;-;- + 1164 NaN NaN 392307.2 NaN 9256 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12251 56.808 NaN 754670 35 0 116970 0.261 + 16087 LPSSFVEKL 9 86 510.29225724220424 1018.5699615512085 2 510.292236328125 MULTI HCD FTMS 0 0 0 12249 353184.34375 0.636926358211667 1 -0.032806396484375 2 Unmodified _LPSSFVEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 114.18643581695662 0.002258955990713129 2 {I|L}PSS{M(Oxidation (M))|F}VEK{I|L} 9 0 + 100.43 0 0 9.8603 9.8603 96.65 0 0 0 79.13524933883949 7.816658315635081 7.816658315635081 17.539237471316298 0 2.646591250700361 1.6989700043360187 1.4916440611282624 0 + + {I|L}PSS{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]SS{M(Oxidation (M))|F}VEK{I|L};{I|L}PSS{M(Oxidation (M))|F}V[VS]A{I|L};[{I|L}P]SS{M(Oxidation (M))|F}D{I|L}K{I|L};[{I|L}P]SS{M(Oxidation (M))|F}V[SG]{I|L}{I|L};[{I|L}P]SS{M(Oxidation (M))|F}DK{I|L}{I|L};[{I|L}P][YG]TVEK{I|L};[PS]{I|L}S{M(Oxidation (M))|F}VEK{I|L};[VP]TS{M(Oxidation (M))|F}VEK{I|L};[{I|L}P]{I|L}Y[SG]EK{I|L} 9.8603;8.1383;8.0591;7.1604;6.322;6.2481;5.7784;5.3883;4.9977;4.8437 +;+;-;-;-;-;-;-;-;- + 911 + NaN NaN 202171.2 NaN 9257 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12252 56.811 NaN 842590 35 0 110250 0.261 + 22640 QVVTLCLSNI 10 92 545.3004161972416 1088.586279461283 2 545.7876586914062 MULTI HCD FTMS 0 0 0 12249 11998.353515625 0.47746924296050103 -1 0.0299835205078125 3 Unmodified _QVVTLCLSNI_ REV__ENSG00000134240|ENST00000369406|HMGCS2;REV__nc|ENSG00000134240|P54868-2|HMGCS2;REV__nc|ENSG00000134240|P54868-3|HMGCS2 16.149105407346934 0.3600587335443843 2 [WK]NPTAGVAT 10 -1 38.727 0 0 3.5575 0 0 0 60.04744536883655 60.04744536883655 1.6875220940089974 0 0 0 0 0 0 0 1.1549471895720984 [WK]NPTAGVAT 3.5575 - 745 NaN NaN 226293.7 NaN 9258 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12253 56.815 NaN 593820 35 0 109540 0.261 + 3395 EEVPIDNN 8 79 465.21544586631273 NaN 0 465.232421875 PEAK HCD FTMS 0 0 0 12249 7063.78662109375 0.3700795219066921 -1 0.0299835205078125 4 Unmodified _EEVPIDNN_ REV__ENSG00000155026|ENST00000404406|RSPH10B;REV__ENSG00000169402|ENST00000404077|RSPH10B2;REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2 14.838274106304384 0.38780017429789254 2 VVD 3 -1 14.679 0 0 1.5811 0 0 484.15792923086923 128.07146631412346 612.2293955449927 0 0 0 0 0 0 0 0.6747425010840047 0 VVD 1.5811 - 157 + NaN NaN 195475.3 NaN 9259 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12254 56.818 NaN 437700 35 0 88729 0.261 + 2608 DTYSWLLKER 10 70 437.56271752243015 1309.6663231674904 3 437.5630187988281 MULTI HCD FTMS 0 0 0 12249 121777.875 1 0 0 5 Unmodified _DTYSWLLKER_ ENSG00000157601|ENST00000398598|MX1 8.28643447893445 0.4314422896236619 2 S[C(Carbamidomethyl (C))N]S 4 9 16.44 0 0 1.2553 0 0 843.4953425405073 0 843.4953425405073 0 10.86696871556164 0 0 0 0 0 0.3252574989159953 0 S[C(Carbamidomethyl (C))N]S 1.2553 - 74 NaN NaN 167806.4 NaN 9260 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12255 56.821 NaN 179710 35 0 29426 0.261 + 1044 AYGHFSYEF 9 44 560.7409475636375 1119.467342194075 2 560.7411499023438 MULTI HCD FTMS 0 0 0 12249 56458.75390625 0.02480814736973348 20 -0.5134544372558594 6 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 16.942295170755138 0.21397866736869717 2 E{M(Oxidation (M))|F} 2 7 25.969 0 0 2.3198 0 0 825.3462660996278 0 825.3462660996278 0 24.3753063169585 0 0 0 0.5 0 0 0 + E{M(Oxidation (M))|F} 2.3198 + + 13 NaN NaN 109852.2 NaN 9261 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12256 56.825 NaN 232630 35 0 18109 0.261 + 34335 YPEDVSEEL 9 60 540.7401310059117 1079.4657090786234 2 540.7393188476562 MULTI HCD FTMS 0 0 0 12249 73464.5 1 0 0 7 Unmodified _YPEDVSEEL_ ENSG00000147065|ENST00000360270|MSN 30.636539890814138 0.10832830463492794 2 SEE{I|L} 4 5 39.157 0 0 3.6274 0 0 603.253549987567 0 603.253549987567 0 32.1669877129645 0 0 0 1.1989700043360187 0 0 0 + SEE{I|L} 3.6274 + + 75 NaN NaN 125055.2 NaN 9262 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12257 56.828 NaN 141360 35 0 12604 0.261 + 8546 HALSLKIVL 9 52 497.3264750078222 992.6383970824444 2 497.3266296386719 MULTI HCD FTMS 0 0 0 12249 30968.06640625 0.13609225267107541 9 -0.238861083984375 8 Unmodified _HALSLKIVL_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 17.11289562659939 0.2125047172822487 2 {I|L}V{I|L} 3 6 25.234 0 0 2.5421 0 0 649.3898792951187 0 649.3898792951187 0 20.62977812912628 0 0 0 0.3807196863200844 0 0 0 + {I|L}V{I|L} 2.5421 + + 19 NaN NaN 108131.7 NaN 9263 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12258 56.831 NaN 149370 35 0 40322 0.261 + 21036 PLSKLHAN 8 41 440.255363712597 878.496174491994 2 440.255126953125 MULTI HCD FTMS 0 0 0 12249 34043.5 0.588137846292387 5 -0.13419723510742188 9 Unmodified _PLSKLHAN_ ENSG00000145623|ENST00000274276|OSMR 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.6624 0 0 713.4174371646487 0 713.4174371646487 0 -0.8804562952784067 -0.8804562952784067 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6624 - 24 + NaN NaN 102259.9 NaN 9264 2992 12249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12260 56.836 NaN 3072400 35 0 832440 0.327 + 32006 VYPLMKEYF 9 102 603.2993449273582 1204.5841369215163 2 603.3002319335938 MULTI HCD FTMS 0 0 0 12259 1694121.5 0.5859150959587641 -3 0.08901596069335938 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 92.65332237495696 0.004456439685314431 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 84.491 0 0 7.0142 7.0142 87.565 0 0 0 6.6465188641551265 6.6465188641551265 6.6465188641551265 4.520534381044499 0 2.0356668758921828 2 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}PEPP{M(Oxidation (M))|F};VYPEP{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]PEP{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}PEPP{M(Oxidation (M))|F};[YV]P{I|L}[CS][{I|L}T]Y{M(Oxidation (M))|F} 7.0142;6.6389;6.4624;5.7744;5.4788;5.4163;5.2891;5.2775;5.2266;5.0823 +;-;+;-;-;-;-;-;-;- + 4004 NaN NaN 565732.6 NaN 9265 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12261 56.84 NaN 1100200 35 0 87939 0.263 + 15810 LPHTDFTL 8 98 472.24783609818707 942.4811192631742 2 472.2478332519531 MULTI HCD FTMS 0 0 0 12259 412371.125 0.17777856934922084 5 -0.12421417236328125 2 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 70.71552829651908 0.028868882208589616 2 [{I|L}P]H{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L} 8 0 + 52.08 0 0 5.5258 5.5258 89.701 0 0 0 16.82233306928366 16.40978057358332 16.40978057358332 14.015070673847688 0 0.9749073637206093 2 0.6747425010840047 0 + + [{I|L}P]H{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};{I|L}TNT[KG]Y{M(Oxidation (M))|F};[{I|L}P][YE][HA]T{I|L};[YE][{I|L}P][HA]T{I|L};{I|L}TNT[KG]{M(Oxidation (M))|F}Y;[{I|L}P]{M(Oxidation (M))|F}QEV[NP];{I|L}TN[WP]EA{I|L};{I|L}TNE[WP]A{I|L};{I|L}HE{M(Oxidation (M))|F}[PS]T{I|L} 5.5258;4.0388;3.7409;3.6754;3.4886;3.0311;2.9736;2.3902;2.2861;2.0423 +;-;-;-;-;-;-;-;-;- + 1202 NaN NaN 257097.5 NaN 9266 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12262 56.844 NaN 1665200 35 0 182950 0.261 + 17573 LYVMVNAKF 9 89 550.7939948191972 1099.5734367051944 2 550.7943115234375 MULTI HCD FTMS 0 0 0 12259 197174.359375 0.5202297095036637 5 -0.12421417236328125 3 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ ENSG00000074201|ENST00000525428|CLNS1A 96.28474662873226 0.004361282420133734 2 {I|L}YV{M(Oxidation (M))|F}VNA 7 2 57.42 0 0 5.222 0 0 0 290.15052502442245 290.15052502442245 11.755624045250258 0 0 0 0 2.079689690656103 1.6989700043360187 0 0.3494850021680094 + {I|L}YV{M(Oxidation (M))|F}VNA 5.222 + + 1640 + NaN NaN 340760.4 NaN 9267 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12263 56.847 NaN 989770 35 0 78181 0.261 -1 0 94 522.2699673862254 1042.5253818392507 2 522.2691650390625 MULTI HCD FTMS 0 0 0 12259 257928.109375 0.2652400310432758 -5 0.150970458984375 4 NaN NaN 2 PSAQ{I|L}PE 7 -1 91.49 0 0 8.7758 0 0 302.1373164236535 0 302.1373164236535 0 61.51145969223869 0 0 0 2.524227503252014 0 1.7544321917401078 0.4247425010840047 PSAQ{I|L}PE 8.7758 - 1257 NaN NaN 240709.5 NaN 9268 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12264 56.851 NaN 370370 35 0 14915 0.261 + 33954 YLSLWDALK 9 93 554.805376942092 1107.596200950984 2 554.79296875 MULTI HCD FTMS 0 0 0 12259 45510.46875 0.4997851692667134 3 -0.078521728515625 5 Unmodified _YLSLWDALK_ ENSG00000149328|ENST00000535456|GLB1L2;ENST00000529077.5_1_11:134236970-134242406:+|nuORF 20.453626601364224 0.18364154288633264 2 [Y{I|L}]A 3 6 33.468 0 0 3.0217 0 0 0 757.389144636784 757.389144636784 10.167118777434752 0 0 0 0 1 1.3010299956639813 0 0 [Y{I|L}]A 3.0217 - 913 NaN NaN 152273.8 NaN 9269 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12265 56.854 NaN 186030 35 0 7982.5 0.261 -1 IYTDMGRFTI 10 68 616.802786339491 1231.591019745782 2 616.8018798828125 MULTI HCD FTMS 0 0 0 12259 29544.654296875 0.48262480719718887 -4 0.12189102172851562 6 Oxidation (M) _IYTDM(Oxidation (M))GRFTI_ ENSG00000105402|ENST00000263354|NAPA;ENSG00000125814|ENST00000377026|NAPB;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;nc|ENSG00000125814|Q9H115-2|NAPB 34.221707139014875 0.19555013683537745 2 [Y{I|L}]TD 4 -1 45.177 0 0 3.6682 0 0 0 736.3453586952538 736.3453586952538 13.507112333562858 0 0 0 0 1.5 2 0 0 [Y{I|L}]TD 3.6682 + + 52 NaN NaN 124866.8 NaN 9270 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12266 56.857 NaN 171230 35 0 20127 0.263 + 33477 YHSMPTYL 8 54 506.23379151314765 1010.4530300930953 2 506.2345886230469 MULTI HCD FTMS 0 0 0 12259 39728.890625 0.09181816468176515 -20 0.5490188598632812 7 Unmodified _YHSMPTYL_ ENSG00000107331|ENST00000341511|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;ENST00000487109.5_1_9:139906084-139911410:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2 5.230669730166228 0.5342319408533849 2 Y{I|L} 2 6 25.969 0 0 2.57 0 0 716.2951078318231 0 716.2951078318231 0 18.979400086720375 0 0 0 0.5 0 0 0 + Y{I|L} 2.57 + + 7 NaN NaN 111527.6 NaN 9271 2993 12259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12268 56.862 NaN 784930 35 0 63761 0.327 + 24362 RYIFAKNLF 9 93 586.3346997694536 1170.654846605707 2 586.3347778320312 MULTI HCD FTMS 0 0 0 12267 389069.84375 0.5856448778584222 2 -0.052280426025390625 1 Unmodified _RYIFAKNLF_ ENSG00000114956|ENST00000264093|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK 88.95385435242217 0.004553379958619559 2 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F} 10 5 + 100.44 0 0 8.5801 8.5801 92.19 0 0 0 18.675908674695165 16.53212513775344 16.53212513775344 9.164539485499262 0 0.9802046884880937 2 0.2742275032520141 1.7544321917401078 {[QV]|[N{I|L}]|[RA]|[KV]}KAHSKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}KAHSKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HS]AKN{I|L}{M(Oxidation (M))|F};[Y{I|L}]R{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}K[HS]AKGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]R{M(Oxidation (M))|F}AKGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[Y{I|L}]KN{I|L}{M(Oxidation (M))|F};[YR]{I|L}{M(Oxidation (M))|F}AKN{I|L}{M(Oxidation (M))|F};[KA]{[QV]|[N{I|L}]|[RA]|[KV]}HSKN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[Y{I|L}]KGG{I|L}{M(Oxidation (M))|F} 8.5801;7.7972;7.3543;6.9847;6.5714;6.1982;5.9736;5.7906;5.7842;5.187 -;-;-;-;-;-;-;+;-;- + 2051 NaN NaN 217526.2 NaN 9272 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12269 56.867 NaN 2408800 35 0 262900 0.261 + 25299 SAYEFYHAL 9 105 550.7560475629205 1099.4975421926408 2 550.75634765625 MULTI HCD FTMS 0 0 0 12267 1066030.375 0.3078559806431682 -4 0.11525726318359375 2 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 147.8311659463005 1.1118996804784084E-05 2 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 91.486 0 0 8.3207 8.3207 88.555 0 0 0 1.5321251377534395 9.35316740696797 1.5321251377534395 1.5321251377534395 0 2.9247425010840047 0 2.142642683904553 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}YHA{I|L};[YE]TG{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};SAYE{M(Oxidation (M))|F}YHA{I|L};[YT]EG{M(Oxidation (M))|F}YHA{I|L};{[SA]|[TG]}YE{M(Oxidation (M))|F}G{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}G{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L};SAY{M(Oxidation (M))|F}EYHA{I|L};[YE]TG{M(Oxidation (M))|F}G{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L} 8.3207;8.1814;7.7843;7.6914;7.47;6.4264;6.2767;6.1373;6.1058;5.7403 +;-;-;-;+;-;-;-;-;- + 3741 NaN NaN 460071 NaN 9273 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12270 56.87 NaN 644430 35 0 57348 0.261 + 4007 ERNLAEQSSM 10 93 582.769221728906 1163.523890524612 2 582.7697143554688 MULTI HCD FTMS 0 0 0 12267 329771.625 0.034112018176711945 29 -0.7561874389648438 3 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 17.11289562659939 0.35104376501799556 2 SVS[YT]VSW 8 -1 69.66 0 0 5.987 0 0 236.07937728301266 0 236.07937728301266 0 55.70738491987967 0 0 0 2.7034021960761265 0 0.75 0 SVS[YT]VSW 5.987 - 1427 + NaN NaN 185512.2 NaN 9274 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12271 56.874 NaN 500460 35 0 29297 0.261 + 8395 GYNVKFDMF 9 96 568.757480575575 1135.5004082179498 2 568.7578125 MULTI HCD FTMS 0 0 0 12267 186542.625 0.8588513703663845 -1 0.026241302490234375 4 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ ENSG00000167468|ENST00000354171|GPX4;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;ENST00000589115.5_1_19:1105440-1106426:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4 79.59630418116434 0.005983006570063981 2 [YG]NVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 97.028 0 0 8.545 8.545 92.83 0 0 0 61.156942697236204 14.09256854528806 14.09256854528806 9.208187539523749 0 2.6549471895720984 2 0.9386218330464625 0 + + [YG]NVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GGVK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]N[YK][TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]AMQ[YE]K{M(Oxidation (M))|F};[YG][KG][C(Carbamidomethyl (C))H]V[C(Carbamidomethyl (C))R];[YG]AMQ[YE]{M(Oxidation (M))|F}K;[RH][HM]{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[RH][HM]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[RH]V[C(Carbamidomethyl (C))R];{[QN]|[E{I|L}]|[KN]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]VN{[DS]|[MA]|[CV]|TT} 8.545;7.734;4.4034;3.9793;3.6711;2.6897;2.4343;2.013;1.7828;1.6328 +;-;-;-;-;-;-;-;-;- + 1857 + NaN NaN 158711.4 NaN 9275 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12272 56.877 NaN 541340 35 0 41993 0.261 + 1869 CVSSFFAISW 10 91 573.7656391822765 1145.5167254313528 2 574.2661743164062 MULTI HCD FTMS 0 0 0 12267 123013.5234375 0.027901486245739255 28 -0.7232437133789062 5 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 30.636539890814138 0.2266618088935899 2 {[MS]|[{M(Oxidation (M))|F}A]}SVS[YT]VSW 10 7 {[MS]|[{M(Oxidation (M))|F}A]} + + 57.107 0.71334 0.32711 4.9852 4.9852 62.301 0 0 0 0 22.067058637471796 0 0 0 2.0356668758921828 0 0.6139829889124311 0 {[MS]|[{M(Oxidation (M))|F}A]}SVS[YT]VSW 4.9852 - 1565 + NaN NaN 174785.6 NaN 9276 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12273 56.88 NaN 259850 35 0 66059 0.261 + 26201 SPSEVTYEL 9 52 512.7453591783142 1023.4761654234284 2 512.7457885742188 MULTI HCD FTMS 0 0 0 12267 147203.453125 0.6543778062437547 -3 0.08903121948242188 6 Unmodified _SPSEVTYEL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 43.85829265575387 0.04763305254408404 2 S{I|L}YE{I|L} 5 5 47.211 0 0 4.6128 0 0 400.15941054511876 0 400.15941054511876 0 40.22160958700539 0 0 0 1.305462187404089 0 0.8494850021680094 0 S{I|L}YE{I|L} 4.6128 - 67 NaN NaN 141893.2 NaN 9277 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12274 56.884 NaN 217350 35 0 18570 0.261 -1 VCRLPGYRAVI 11 54 435.2483503465838 1302.7232216399514 3 435.2489318847656 MULTI HCD FTMS 0 0 0 12267 42670.95703125 0.20539333820842764 6 -0.14699172973632812 7 Carbamidomethyl (C) _VC(Carbamidomethyl (C))RLPGYRAVI_ ENSG00000133739|ENST00000360375|LRRCC1;nc|ENSG00000133739|Q9C099-2|LRRCC1 2.843284757254958 0.4064509854383032 2 VV{I|L} 3 -1 16.682 0 0 1.2806 0 0 973.4919421983483 0 973.4919421983483 0 7.218487496163565 0 0 0 0 0 0 0 VV{I|L} 1.2806 - 27 + NaN NaN 123917.2 NaN 9278 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12275 56.887 NaN 364480 35 0 40517 0.261 + 21617 PYPFTHHWQF 10 67 453.88042653904404 1358.619450217332 3 453.8813781738281 MULTI HCD FTMS 0 0 0 12267 86787.796875 0.22452148274864062 -8 0.23614883422851562 8 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 17.86316937532769 0.34402595751606074 2 PY 2 8 45.217 0 0 3.3281 0 0 0 1095.479743116252 1095.479743116252 16.583624920952502 0 0 0 0 0.4247425010840047 2 0 0 + PY 3.3281 + + 52 + NaN NaN 150448.9 NaN 9279 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12276 56.89 NaN 255300 35 0 28203 0.261 + 6282 FPFHSAPAL 9 71 493.75824104696125 985.5019291607225 2 493.7582092285156 MULTI HCD FTMS 0 0 0 12267 58141.86328125 0.09439865985678092 -7 0.20666885375976562 9 Unmodified _FPFHSAPAL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 57.47134341890925 0.0211188941628804 2 SAPA{I|L} 5 4 46.542 0 0 4.7227 0 0 528.248827049025 0 528.248827049025 0 31.136218907515314 0 0 0 0.8494850021680094 0 0.8494850021680094 0 + SAPA{I|L} 4.7227 + + 93 NaN NaN 126716.2 NaN 9280 2994 12267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12278 56.895 NaN 974280 35 0 260940 0.327 + 2825 DYLEKYYKF 9 83 423.54471134545656 1267.6123046365697 3 423.5448913574219 MULTI HCD FTMS 0 0 0 12277 303511.28125 0.4767862053676316 4 -0.09795379638671875 1 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 72.96794272382148 0.008127836904478181 2 DY{I|L}EKY[YK]{M(Oxidation (M))|F} 9 0 + 97.898 0 0 7.723 7.723 95.094 0 0 0 83.29357821901382 8.696662315049934 8.696662315049934 27.187101754021825 0 1.6989700043360187 2 0.805462187404089 0 + + DY{I|L}EKY[YK]{M(Oxidation (M))|F};DY{I|L}EVK[QA]A[MT];DY{I|L}EKV[QA]A[MT];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}S[R{I|L}]E{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[QN]|[E{I|L}]|[KN]}YDKVE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[QN]|[E{I|L}]|[KN]}YDVKE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YT]QQKVE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YT]QQVKE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YT]G[QA]KVE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YE]VS[R{I|L}]E{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7.723;5.5782;5.4807;3.8049;3.6258;3.5282;3.173;3.0754;2.9389;2.8892 +;-;-;-;-;-;-;-;-;- + 745 + NaN NaN 234270.3 NaN 9281 2995 12277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12279 56.899 NaN 990180 35 0 80192 0.261 + 22796 QYLELAHSL 9 99 537.2847706625042 1072.5549883918084 2 537.2853393554688 MULTI HCD FTMS 0 0 0 12277 311643.03125 0.7494831443312644 -1 0.03279876708984375 2 Unmodified _QYLELAHSL_ ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL 160.51597146486608 8.986712039288196E-09 2 HA{I|L}E{I|L}C(Carbamidomethyl (C)){I|L} 7 5 61.736 0 0 5.756 0 0 218.12677199531407 0 218.12677199531407 0 28.958902300579496 0 0 0 1.0616042352767734 0 1.2059771852360797 0 HA{I|L}E{I|L}C(Carbamidomethyl (C)){I|L} 5.756 - 1577 NaN NaN 237284.3 NaN 9282 2995 12277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12280 56.903 NaN 276730 35 0 30858 0.261 + 13976 KYSEVFEAI 9 64 543.2794262824139 1084.5442996316276 2 543.2793579101562 MULTI HCD FTMS 0 0 0 12277 174196.859375 0.21694674410945733 7 -0.16986465454101562 3 Unmodified _KYSEVFEAI_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 23.789781309258295 0.1548179064208189 2 E{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}EA{I|L} 7 5 51.274 0 0 4.7277 0 0 202.13203627754064 0 202.13203627754064 0 24.495557461415416 0 0 0 0 0 0.3807196863200844 0 E{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}EA{I|L} 4.7277 - 354 NaN NaN 136323.5 NaN 9283 2995 12277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12281 56.906 NaN 647350 35 0 53488 0.261 + 34691 YPVDLGDKF 9 85 527.2662740009129 1052.5179950686256 2 527.2662353515625 MULTI HCD FTMS 0 0 0 12277 297267.4375 0.27542675033682207 -6 0.18093109130859375 4 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 125.52916310638031 0.0008761121089336018 2 YPVD{I|L}GDK 8 1 99.078 0 0 9.4134 0 0 0 162.0560244195922 162.0560244195922 68.45098040014257 0 0 0 0 3.048455006504028 1.5228787452803376 1.75 0.25 + YPVD{I|L}GDK 9.4134 + + 965 + NaN NaN 179802.6 NaN 9284 2995 12277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12282 56.91 NaN 279300 35 0 20479 0.261 + 18273 MPDVDLHL 8 71 478.23139562648873 954.4482383197775 2 478.23114013671875 MULTI HCD FTMS 0 0 0 12277 95675.6328125 0.08693470666318204 30 -0.7782402038574219 5 Oxidation (M) _M(Oxidation (M))PDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 70.71552829651908 0.028868882208589616 2 {M(Oxidation (M))|F}PDVD{I|L}H{I|L} 8 0 + 57.657 0 0 6.0408 6.0408 91.47 0 0 0 38.192672072328904 11.237125054200234 11.237125054200234 19.987737688117235 0 1.7302046884880937 0 0 0 + + {M(Oxidation (M))|F}PDVD{I|L}H{I|L};M[TP]ED{I|L}H{I|L};{M(Oxidation (M))|F}PDV[H{I|L}]D{I|L};[H{I|L}][{M(Oxidation (M))|F}V]VDPE;M[TP]E[H{I|L}]D{I|L} 6.0408;3.9467;2.5789;2.524;0.48473 +;-;-;-;- + 146 + NaN NaN 136578.6 NaN 9285 2995 12277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12284 56.915 NaN 1672900 35 0 277400 0.327 -1 DPRNATSVCI 10 112 566.7740010513621 1131.5334491695241 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12283 915457.1875 0.019626494470408037 31 -0.814483642578125 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 2 P{M(Oxidation (M))|F}STSVSW 8 -1 80.016 0 0 7.0715 0 0 222.0996373790876 0 222.0996373790876 0 49.68642789064525 0 0 0 2.805462187404089 0 1.4361818737241734 0 P{M(Oxidation (M))|F}STSVSW 7.0715 - 7554 + NaN NaN 340625.9 NaN 9286 2996 12283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12285 56.919 NaN 868180 35 0 105070 0.261 + 4460 EYIKFLRSI 9 100 584.8400381309159 1167.6655233286317 2 584.8402709960938 MULTI HCD FTMS 0 0 0 12283 324586.625 1 0 0 2 Unmodified _EYIKFLRSI_ ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2 118.20947048124657 0.0016021842648852112 2 [YE]{I|L}K{M(Oxidation (M))|F}{I|L}RS{I|L} 9 0 + 95.108 0 0 8.1451 8.1451 89.543 0 0 0 4.573259432077563 4.573259432077563 4.573259432077563 4.573259432077563 0 2.6861818737241734 1.6989700043360187 2.618415180652539 0 + + [YE]{I|L}K{M(Oxidation (M))|F}{I|L}RS{I|L};EY{I|L}K{M(Oxidation (M))|F}{I|L}RS{I|L};EY{I|L}K{I|L}{M(Oxidation (M))|F}RS{I|L};{I|L}[YE]K{M(Oxidation (M))|F}{I|L}RS{I|L};[K{I|L}][YE]{M(Oxidation (M))|F}{I|L}RS{I|L};[YT][R{I|L}]{M(Oxidation (M))|F}{I|L}[VG]S{I|L};{I|L}[YE]K{I|L}{M(Oxidation (M))|F}RS{I|L};[K{I|L}]{M(Oxidation (M))|F}YE{I|L}RS{I|L};[YN]KK{M(Oxidation (M))|F}{I|L}[VG]S{I|L};[HV]R[C(Carbamidomethyl (C))K]{I|L}RS{I|L} 8.1451;7.7534;6.6354;4.7604;4.0111;3.8064;3.6424;3.2086;2.9783;2.3273 +;+;-;-;-;-;-;-;-;- + 716 NaN NaN 238391.8 NaN 9287 2996 12283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12286 56.923 NaN 624630 35 0 102510 0.261 + 5729 FPAGYMYPSM 10 80 598.2435232613002 1194.4724935894003 2 598.2438354492188 MULTI HCD FTMS 0 0 0 12283 294208.125 0.9055754199390958 -20 0.5589866638183594 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 104.79918948944588 5.75914050033095E-05 2 [YT]DR{M(Oxidation (M))|F}YPST 9 6 67.533 0 0 5.6538 0 0 0 60.97650469264332 60.97650469264332 49.60077508221467 0 0 0 0 1.8494850021680094 1.3979400086720375 1.1747425010840047 0 [YT]DR{M(Oxidation (M))|F}YPST 5.6538 - 508 NaN NaN 187902.3 NaN 9288 2996 12283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12287 56.926 NaN 618850 35 0 124300 0.264 + 2125 DFNPLGEGKKW 11 69 430.8883806921103 NaN 0 430.8882751464844 PEAK HCD FTMS 0 0 0 12283 138698.3125 0.36814935180738284 -144 3.4881744384765625 4 Unmodified _DFNPLGEGKKW_ REV__ENSG00000090520|ENST00000265028|DNAJB11 4.11662792887243 0.330442455561113 2 A 1 -1 6.9897 0 0 0.81298 0 0 653.6568140191831 132.04538904361564 785.7022030627987 0 0 0 0 0 0 0 0 0 A 0.81298 - 25 + NaN NaN 199958.8 NaN 9289 2996 12283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12288 56.929 NaN 579010 35 0 51666 0.261 + 30765 VPNNKEEDEL 10 76 593.7820593582654 1185.5495657833308 2 593.7824096679688 MULTI HCD FTMS 0 0 0 12283 132677.09375 1 0 0 5 Unmodified _VPNNKEEDEL_ REV__ENSG00000137812|ENST00000399668|KNL1;REV__nc|ENSG00000137812|Q8NG31|KNL1 18.1463463914782 0.3413772152514074 2 NVE{I|L} 4 -1 40.86 0 0 3.4465 0 0 712.3016224591812 0 712.3016224591812 0 26.94660339379311 0 0 0 0.3252574989159953 0 0 0.805462187404089 NVE{I|L} 3.4465 - 60 NaN NaN 187530.5 NaN 9290 2996 12283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12289 56.933 NaN 262790 35 0 11072 0.261 + 2827 DYLEKYYKF 9 59 634.8134228132777 1267.6122926933554 2 634.8135986328125 MULTI HCD FTMS 0 0 0 12283 87552.1171875 0.3421803196357851 5 -0.127532958984375 6 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 42.312485326615175 0.05472917415473307 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[YK]YK{M(Oxidation (M))|F} 9 0 + 68.637 0 0 5.4146 5.4146 89.974 0 0 0 7.719159051337385 53.58735303473303 7.719159051337385 16.267959391884546 0 1.7302046884880937 2 0.3252574989159953 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[YK]YK{M(Oxidation (M))|F};DY{I|L}E[VP][W{M(Oxidation (M))|F}]{[TV]|[{I|L}S]};[RH]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[W{M(Oxidation (M))|F}]{[TV]|[{I|L}S]} 5.4146;4.1313;0.26972 +;-;- + 81 NaN NaN 122712.8 NaN 9291 2996 12283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12291 56.937 NaN 5383900 35 0 1091800 0.327 + 8425 GYSEHFVEF 9 102 557.7454155041603 1113.4762780751205 2 557.7457885742188 MULTI HCD FTMS 0 0 0 12290 3998391 0.9898315767480157 1 -0.022823333740234375 1 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 156.15588289589118 2.3186882095317417E-06 2 [YG]SEH{M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 9 0 + 89.848 0 0 8.0692 8.0692 93.661 0 0 0 11.931365770913672 59.38039076304328 11.931365770913672 12.258177263343413 0 3.017220322351953 1.5228787452803376 1.4604093769761874 0 + + [YG]SEH{M(Oxidation (M))|F}VE{M(Oxidation (M))|F};[YG]SEH{M(Oxidation (M))|F}V{M(Oxidation (M))|F}E;[YG]SEH{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};[YG]SEHEV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]SEHE{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[HS][YG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[HS]EGY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[HS]EYG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HS][YG]E{M(Oxidation (M))|F};[YG][QP][PG]EGY{M(Oxidation (M))|F} 8.0692;6.9683;6.8216;5.7323;5.518;3.0884;3.062;2.9038;2.7904;2.7687 +;-;-;-;-;-;-;-;-;- + 3469 NaN NaN 644524.8 NaN 9292 2997 12290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12292 56.942 NaN 1268100 35 0 169450 0.261 + 19461 NPSVREFVL 9 106 530.7929050215179 1059.5712571098356 2 530.7930908203125 MULTI HCD FTMS 0 0 0 12290 619972.9375 0.03163040732661596 17 -0.4184417724609375 2 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 107.09958533191995 0.0034159042678574016 2 [NP]SV{[RE]|[WV]}{M(Oxidation (M))|F}V{I|L} 9 0 + 79.692 0 0 7.5212 7.5212 93.758 0 0 0 16.97621246364342 16.478174818886373 16.478174818886373 16.97621246364342 0 2.1307196863200843 1.0457574905606752 1.110924374808178 1.9247425010840047 + + [NP]SV{[RE]|[WV]}{M(Oxidation (M))|F}V{I|L};NPSV{[RE]|[WV]}{M(Oxidation (M))|F}V{I|L};[NP]SV[RV][{M(Oxidation (M))|F}E]{I|L};{[NV]|[RG]}[PS]{[RE]|[WV]}{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NV{I|L};{[NV]|[RG]}[SG]R[C(Carbamidomethyl (C))R]V{I|L};{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}V{I|L}{M(Oxidation (M))|F}N{I|L};[QT][PA]{[RE]|[WV]}{M(Oxidation (M))|F}V{I|L};{[NV]|[RG]}{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VN{I|L} 7.5212;5.919;4.0007;3.1986;2.3716;2.2537;1.2442;0.93789;0.62188 +;+;-;-;-;-;-;-;- + 739 NaN NaN 283497.1 NaN 9293 2997 12290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12293 56.945 NaN 924630 35 0 92929 0.261 + 13886 KYQEGLITL 9 85 532.8025151810507 1063.5904774289013 2 532.8030395507812 MULTI HCD FTMS 0 0 0 12290 290147.875 0.05488609467679487 12 -0.3275489807128906 3 Unmodified _KYQEGLITL_ nc|ENSG00000151914|Q03001-3|DST 59.368380827593164 0.01846506874148156 2 [YK]QEG{I|L}{I|L}T{I|L} 9 0 + 60.474 0 0 5.6858 5.6858 88.042 0 0 0 2.922152515121219 22.84903859726029 2.922152515121219 9.208187539523749 0 1.75 0 0.3494850021680094 0.535666875892183 + + [YK]QEG{I|L}{I|L}T{I|L};[YK][AG]EG{I|L}{I|L}T{I|L} 5.6858;4.82 +;- + 1118 NaN NaN 221021.3 NaN 9294 2997 12290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12294 56.949 NaN 513060 35 0 36058 0.261 + 35458 YYEYNHDLF 9 79 632.2696564926487 1262.5247600520972 2 632.2695922851562 MULTI HCD FTMS 0 0 0 12290 196994.265625 0.27983908872790964 -4 0.10139083862304688 4 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 36.506200033944 0.08138327636155518 2 YYEA[NS]W[PS]{M(Oxidation (M))|F} 10 5 + 46.348 0 0 3.6711 3.6711 82.134 0 0 0 1.7799369122219133 8.1437180047066 1.7799369122219133 3.4948500216800937 0 1 2 0 0.3494850021680094 YYEA[NS]W[PS]{M(Oxidation (M))|F};YYEA[NS]W{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F};YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYHTY{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]A{[ES]|[DT]|[{I|L}C]}YW{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]WTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};[YN]WTY{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YE]YA[NS]W[PS]{M(Oxidation (M))|F};[YE]YA[NS]W{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S 3.6711;3.3943;3.0961;2.8588;2.8588;2.8193;2.6192;2.3424;1.313;1.0362 -;-;-;-;-;-;-;-;-;- 768 NaN NaN 164445.4 NaN 9295 2997 12290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12295 56.952 NaN 215310 35 0 16011 0.261 -1 SDEEGCPVCSA 11 61 577.2114655606084 1152.4083781880167 2 577.211181640625 MULTI HCD FTMS 0 0 0 12290 28519.6171875 0.7162182378376926 1 -0.022823333740234375 5 Carbamidomethyl (C) _SDEEGC(Carbamidomethyl (C))PVCSA_ ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF 2.735195868890462 0.4069250265843076 2 P 1 -1 1.5938 0 0 0.1383 0 0 135.91290807258548 916.4159639947874 1052.328872067373 0 0 0 0 0 0 0 0 0 P 0.1383 + + 1 + NaN NaN 134175.9 NaN 9296 2997 12290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12296 56.955 NaN 84990 35 0 3525.9 0.261 + -1 ARMMMFRMF 9 38 642.7727661132812 NaN 0 642.7727661132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 4 Oxidation (M) _ARM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))FRM(Oxidation (M))F_ REV__ENSG00000241553|ENST00000397261|ARPC4;REV__ENST00000467289.5_1_3:9834805-9845712:+|nuORF;REV__nc|ENSG00000241553|P59998-2|ARPC4;REV__nc|ENSG00000241553|P59998-3|ARPC4 0.5247636613948944 0.2927039108006614 2 E 1 -1 6.9897 0 0 0.54544 0 0 181.02502314277496 968.3950899713499 1149.420113114125 0 0 0 0 0 0 0 0 0 E 0.54544 - 1 + NaN NaN 116947.3 NaN 9297 2997 12290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12298 56.96 NaN 1314700 35 0 250290 0.327 + 22720 QYDEAVAQF 9 97 535.7429635615838 1069.4713741899675 2 535.7431030273438 MULTI HCD FTMS 0 0 0 12297 532811.875 0.7307177293672071 -2 0.04569244384765625 1 Unmodified _QYDEAVAQF_ ENSG00000132780|ENST00000350030|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-4|NASP 96.11092074494114 0.00436583732602279 2 [{M(Oxidation (M))|F}E]A{[ET]|[MV]}QAQ{M(Oxidation (M))|F} 9 5 + 59.235 0 0 5.5387 5.5387 87.763 0 0 0 4.137342758552691 45.740400872117206 4.137342758552691 9.208187539523749 0 1.3494850021680094 0 1.1237125054200234 1.1861818737241734 [{M(Oxidation (M))|F}E]A{[ET]|[MV]}QAQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{[ET]|[MV]}QA[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{[ET]|[MV]}[AG]AQ{M(Oxidation (M))|F} 5.5387;4.6777;3.9246 -;-;- 746 NaN NaN 306456.8 NaN 9298 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12299 56.965 NaN 649920 35 0 82351 0.261 + 12695 KWNPTAGVAF 10 88 545.7879014405388 1089.5612499478775 2 545.7881469726562 MULTI HCD FTMS 0 0 0 12297 297559.46875 0.5138634451996992 3 -0.08184051513671875 2 Unmodified _KWNPTAGVAF_ ENSG00000102978|ENST00000219252|POLR2C;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF 65.47368725323818 0.022948616544343086 2 [WK]N[TP]AGVA{M(Oxidation (M))|F} 10 0 + 65.966 0 0 6.0543 6.0543 87.05 0 0 0 7.512262311882765 52.06485629844558 7.512262311882765 7.3290220443144705 0 2.2614393726401687 0 0 1.1747425010840047 + + [WK]N[TP]AGVA{M(Oxidation (M))|F};[WK]N[TP]QVA{M(Oxidation (M))|F};[WK]GG[TP]AGVA{M(Oxidation (M))|F};[WK]GG[TP]QVA{M(Oxidation (M))|F};[HV]VT{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TP]{[WN]|[YH]}KA{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}A[TP]{[WN]|[YH]}K{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TP]A{[WN]|[YH]}K{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[TP]{[WN]|[YH]}AK{M(Oxidation (M))|F} 6.0543;5.3817;5.2132;4.5366;2.0505;1.5226;1.1363;0.97472;0.42215 +;-;-;-;-;-;-;-;- + 666 NaN NaN 190273.3 NaN 9299 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12300 56.968 NaN 434230 35 0 81719 0.261 + 25086 SADPNVVDL 9 69 465.2322858627482 928.4500187922964 2 465.2320556640625 MULTI HCD FTMS 0 0 0 12297 173497.59375 0.6003396421052404 3 -0.08184051513671875 3 Unmodified _SADPNVVDL_ ENSG00000181938|ENST00000318129|GINS3;ENST00000567143.1_1_16:58436992-58437325:+|nuORF;nc|ENSG00000181938|Q9BRX5-3|GINS3 40.23920728925047 0.06424668180817725 2 VVD{I|L} 4 5 41.542 0 0 4.4744 0 0 484.19078261543126 0 484.19078261543126 0 23.125918950875498 0 0 0 1.3494850021680094 0 0 0 + VVD{I|L} 4.4744 + + 125 NaN NaN 156242.7 NaN 9300 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12301 56.972 NaN 717010 35 0 50788 0.261 + 35459 YYEYNHDLF 9 85 632.2696564926487 1262.5247600520972 2 632.269775390625 MULTI HCD FTMS 0 0 0 12297 350284.34375 0.4975944413389767 -3 0.06517410278320312 4 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 92.65332237495696 0.004456439685314431 2 YYEASNW[PS]{M(Oxidation (M))|F} 10 5 + 64.319 0 0 5.0945 5.0945 88.553 0 0 0 17.38199529198932 15.469589020847735 15.469589020847735 12.051794385463616 0 1 2 0.3807196863200844 0.28872548999643577 YYEASNW[PS]{M(Oxidation (M))|F};YYEASGGW[PS]{M(Oxidation (M))|F};[YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F};YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};[YN]WTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYHT[QP]EYY;YYHT[EP][SG]Y{M(Oxidation (M))|F};YYHT[EP]QYY;[YN]WT[EP][SG]Y{M(Oxidation (M))|F};[YN]WT[QP]EYY 5.0945;4.1399;3.7177;3.6777;3.2506;3.0537;2.9986;2.6803;2.5715;2.3979 -;-;-;-;-;-;-;-;-;- 1767 NaN NaN 202418.2 NaN 9301 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12302 56.975 NaN 333660 35 0 161890 0.262 -1 0 57 516.3015368906405 515.2942604240404 1 516.3014526367188 MULTI HCD FTMS 0 0 0 12297 134178.296875 0.6424757362361941 2 -0.04901885986328125 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 135267.4 NaN 9302 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12303 56.978 NaN 273770 35 0 29929 0.261 + 13377 KYNDTFWKEF 10 57 459.8873073017674 1376.6400925055023 3 459.8875427246094 MULTI HCD FTMS 0 0 0 12297 91914.40625 0.3718164618412813 4 -0.1046905517578125 6 Unmodified _KYNDTFWKEF_ ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P 19.143941131932106 0.33204605063940484 2 {M(Oxidation (M))|F}A[RD]N{M(Oxidation (M))|F} 6 8 31.788 0 0 2.3091 0 0 608.2960428733833 0 608.2960428733833 0 22.32402579306971 0 0 0 1.4247425010840047 0 0.7742275032520141 0 {M(Oxidation (M))|F}A[RD]N{M(Oxidation (M))|F} 2.3091 - 60 + NaN NaN 148807.5 NaN 9303 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12304 56.982 NaN 192850 35 0 17983 0.261 + 1045 AYGHFSYEF 9 62 560.7409475636375 1119.467342194075 2 561.2418212890625 MULTI HCD FTMS 0 0 0 12297 11384.86328125 0.009128564999009757 25 -0.6582145690917969 7 Unmodified _AYGHFSYEF_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 18.13498045792455 0.20367413111508956 2 Q{M(Oxidation (M))|F} 2 8 25.969 0 0 2.3198 0 0 826.3486195294937 0 826.3486195294937 0 18.11575005870594 0 0 0 0.5 0 0 0 Q{M(Oxidation (M))|F} 2.3198 - 101 NaN NaN 118194.9 NaN 9304 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12305 56.985 NaN 222980 35 0 10282 0.261 + 2828 DYLEKYYKF 9 61 634.8134228132777 1267.6122926933554 2 635.3143920898438 MULTI HCD FTMS 0 0 0 12297 9988.7724609375 0.04098237716228704 6 -0.16706466674804688 8 Unmodified _DYLEKYYKF_ ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF 30.7034409873982 0.10802119112323902 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YR]TYK{M(Oxidation (M))|F} 9 3 + 58.65 0 0 4.6268 4.6268 90.378 0 0 0 2.759621790487685 41.227496652734246 2.759621790487685 35.00508444608478 0 0.8807196863200843 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YR]TYK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KT][KC]TYK{M(Oxidation (M))|F} 4.6268;1.8653 -;- 82 NaN NaN 138159.8 NaN 9305 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12306 56.988 NaN 120840 35 0 6775.2 0.261 -1 FFEMLPSSEF 10 40 625.2778047527263 1248.5410565722525 2 625.2777709960938 MULTI HCD FTMS 0 0 0 12297 29194.220703125 0.5843088139877847 -1 0.022823333740234375 9 Oxidation (M) _FFEM(Oxidation (M))LPSSEF_ ENSG00000132661|ENST00000254998|NXT1;ENST00000458481.1_1_13:39743799-39744087:-|nuORF 9.38312468134398 0.42334543440173333 2 SE{M(Oxidation (M))|F} 3 -1 33.188 0 0 2.6581 0 0 867.3841419904312 0 867.3841419904312 0 30.713337517843655 0 0 0 0.5 0 0.5 0 SE{M(Oxidation (M))|F} 2.6581 + + 9 NaN NaN 113808.1 NaN 9306 2998 12297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12308 56.993 NaN 3144200 35 0 914260 0.327 + 32007 VYPLMKEYF 9 85 603.2993449273582 1204.5841369215163 2 603.2996215820312 MULTI HCD FTMS 0 0 0 12307 1894358 0.6551672647742517 3 -0.07191085815429688 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 79.59630418116434 0.005983006570063981 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 87.189 0 0 7.2381 7.2381 87.949 0 0 0 15.713337517843655 15.713337517843655 15.713337517843655 4.436974992327123 0 2.305462187404089 2 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}P{I|L}P{M(Oxidation (M))|F};VY{I|L}P{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYEVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F} 7.2381;6.8698;5.9961;5.9337;5.805;5.7531;5.6907;5.561;5.5551;5.5186 +;-;-;-;-;-;-;-;-;- + 2645 NaN NaN 525150.9 NaN 9307 2999 12307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12309 56.997 NaN 865810 35 0 192660 0.264 + 1315 AYNKLNVFHW 10 85 431.22407106445723 1290.6503837935718 3 431.22412109375 MULTI HCD FTMS 0 0 0 12307 169736.40625 0.6622052016653747 -1 0.032779693603515625 2 Unmodified _AYNKLNVFHW_ ENSG00000213614|ENST00000268097|HEXA;ENST00000563762.5_1_15:72640446-72647950:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA 69.33821966488729 0.018369488249132326 2 AYNK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W 10 0 + 98.722 0 0 7.649 7.649 89.293 0 0 0 36.53212513775344 8.507112333562858 8.507112333562858 6.00833760139686 0 2.1549471895720984 2 0 0.3807196863200844 + + AYNK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYNKQVV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYNK{I|L}NV[WH]{M(Oxidation (M))|F};AYNK{I|L}GGV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYGGK{I|L}NV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYNKQVV[WH]{M(Oxidation (M))|F};AYNK[AG]VV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYGGKQVV{[{M(Oxidation (M))|F}H]|[RQ]}W;AYGGK{I|L}NV[WH]{M(Oxidation (M))|F};AYNK{I|L}GGV[WH]{M(Oxidation (M))|F} 7.649;7.1834;6.9898;6.9389;6.9389;6.5243;6.4734;6.4734;6.2798;6.2798 +;-;-;-;-;-;-;-;-;- + 508 + NaN NaN 229303.9 NaN 9308 2999 12307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12310 57.001 NaN 257260 35 0 22118 0.261 + 14008 KYTEITATYF 10 59 618.8107948665202 1235.6070367998402 2 618.810791015625 MULTI HCD FTMS 0 0 0 12307 99796.296875 0.9477159571838235 -2 0.05560302734375 3 Unmodified _KYTEITATYF_ ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL 42.312485326615175 0.12533928745458864 2 [YT][TA]VVTATY{M(Oxidation (M))|F} 11 4 + 85.45 0 0 6.9156 6.9156 94.536 0 0 0 15.139922050488181 74.99214827082542 15.139922050488181 45.2165251409206 0 1.8494850021680094 1.3010299956639813 0.8494850021680094 0 [YT][TA]VVTATY{M(Oxidation (M))|F};[QP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[RP]ATY{M(Oxidation (M))|F};[NS]{NN|[MP]|[D{I|L}]|[EV]}ATVV[TA][{M(Oxidation (M))|F}V];[NS]{NN|[MP]|[D{I|L}]|[EV]}ATVV{[CP]|[EA]}A{M(Oxidation (M))|F} 6.9156;3.2561;2.3717;2.0888 -;-;-;- 210 NaN NaN 128328.6 NaN 9309 2999 12307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12311 57.004 NaN 109970 35 0 4183.7 0.261 + -1 VVLYRNCVNF 10 42 642.3305280750626 NaN 0 642.5799560546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _VVLYRNC(Carbamidomethyl (C))VNF_ REV__ENSG00000115128|ENST00000233468|SF3B6 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114913.5 NaN 9310 2999 12307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12313 57.009 NaN 4530700 35 0 567600 0.327 + 25300 SAYEFYHAL 9 102 550.7560475629205 1099.4975421926408 2 550.7564697265625 MULTI HCD FTMS 0 0 0 12312 2963082.5 0.8557004473386702 2 -0.05567169189453125 1 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 147.8311659463005 1.1118996804784084E-05 2 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 92.551 0 0 8.4176 8.4176 88.681 0 0 0 1.5056022741834596 7.40778928100886 1.5056022741834596 1.5056022741834596 0 3 0 2.173877368056628 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YE]AS{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};SAYE{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ES{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}T]DS{M(Oxidation (M))|F}YHA{I|L};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}YHA{I|L};SAY{M(Oxidation (M))|F}EYHA{I|L} 8.4176;8.2806;8.2527;7.8027;7.7438;7.1855;6.7354;6.4616;6.452;6.4212 +;-;-;-;+;-;-;-;-;- + 3337 NaN NaN 699660.9 NaN 9311 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12314 57.014 NaN 2488300 35 0 201430 0.261 + -1 MLIMLYML 8 105 522.2699673862254 1042.5253818392507 2 522.7716674804688 MULTI HCD FTMS 0 0 0 12312 1248999 0.8572117586693029 1 -0.0328216552734375 2 Oxidation (M) _MLIM(Oxidation (M))LYML_ REV__ENSG00000174970|ENST00000641071|OR10AG1;REV__nc|ENSG00000174970|Q8NH19|OR10AG1 32.45364647766026 0.3278715449852315 2 {M(Oxidation (M))|F}P{I|L}QASPH 8 -1 86.622 0 0 8.3088 0 0 0 162.05568872623283 162.05568872623283 29.97383425238482 0 0 0 0 2.6223637474483468 0.7958800173440752 1.615356566548286 0.6747425010840047 {M(Oxidation (M))|F}P{I|L}QASPH 8.3088 - 4722 + NaN NaN 476524.8 NaN 9312 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12315 57.017 NaN 1612300 35 0 262280 0.261 + 27562 TADPLDYRL 9 89 532.274602694287 1062.5346524553738 2 532.2747802734375 MULTI HCD FTMS 0 0 0 12312 711959.75 0.5935722165819021 -4 0.0947113037109375 3 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 69.33821966488729 0.009302356455414924 2 TADP{I|L}DYR{I|L} 9 0 + 80.763 0 0 7.601 7.601 89.327 0 0 0 54.78930389508952 5.6456514226180445 5.6456514226180445 6.34331974619171 0 2.5189301784845295 1.5228787452803376 0.3054621874040891 0 + + TADP{I|L}DYR{I|L};[TA]DP{I|L}DYR{I|L};TADP{I|L}DHV[VP];T{I|L}VHD{I|L}PD[PG];[{I|L}T]VHD{I|L}P[PG]D;TA[TA]YV[HS]T{I|L};[DP][TA]{I|L}DYR{I|L};[DP]{I|L}[TA]DYR{I|L};[DP]{I|L}D[TA]YR{I|L};[{I|L}T]VHD{[HG]|PP}{I|L}GD 7.601;7.004;6.6031;6.2232;3.8326;3.5994;3.0369;2.4714;1.9541;1.9466 +;+;-;-;-;-;-;-;-;- + 937 + NaN NaN 340419.9 NaN 9313 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12316 57.021 NaN 607500 35 0 50694 0.261 -1 0 94 582.769221728906 1163.523890524612 2 582.7697143554688 MULTI HCD FTMS 0 0 0 12312 226143.265625 0.02339256201178921 35 -0.9122238159179688 4 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GV[YT]SVS 9 -1 63.645 0 0 5.47 0 0 0 233.05500129884345 233.05500129884345 36.78039686565757 0 0 0 0 1.8807196863200843 1.6989700043360187 0.8516784832448856 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GV[YT]SVS 5.47 - 1926 NaN NaN 187111.9 NaN 9314 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12317 57.024 NaN 192590 35 0 42790 0.262 + 26202 SPSEVTYEL 9 46 512.7453591783142 1023.4761654234284 2 512.745361328125 MULTI HCD FTMS 0 0 0 12312 103337.7734375 0.45937744019308585 3 -0.09185409545898438 5 Unmodified _SPSEVTYEL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 43.85829265575387 0.04763305254408404 2 EYE{I|L} 4 5 43.66 0 0 4.2658 0 0 471.2345143048844 0 471.2345143048844 0 35.43305028184122 0 0 0 0.8494850021680094 0 0.7742275032520141 0 EYE{I|L} 4.2658 - 42 NaN NaN 113468.3 NaN 9315 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12318 57.027 NaN 840110 35 0 94746 0.261 + 15811 LPHTDFTL 8 81 472.24783609818707 942.4811192631742 2 472.2478332519531 MULTI HCD FTMS 0 0 0 12312 96414.75 0.04156565598321849 12 -0.3074150085449219 6 Unmodified _LPHTDFTL_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 38.15118350030904 0.25467990583502337 2 [{I|L}P]YE[HA]T{I|L} 8 4 + 37.24 0 0 3.9512 3.9512 81.804 0 0 0 1.9897000433601875 0.3003327262797626 0.3003327262797626 1.9897000433601875 0 0.5484550065040281 2 0.5891368308784531 0 [{I|L}P]YE[HA]T{I|L};[YE][{I|L}P][HA]T{I|L};[{I|L}P]{M(Oxidation (M))|F}Q[DN]P{I|L};[YE]{M(Oxidation (M))|F}[KT][KQ];[{I|L}P]{M(Oxidation (M))|F}QEV[NP];[{I|L}P]YG[PS]V[NP];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VQ[DP]P{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V[AG][DP]P{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QD]|[EN]|[WG]|[KD]|[RS]}[VP]P{I|L} 3.9512;3.7401;2.9885;2.8898;2.74;1.8643;1.8551;0.87236;0.40212 -;-;-;-;-;-;-;-;- 842 NaN NaN 212201.8 NaN 9316 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12319 57.031 NaN 225640 35 0 10432 0.261 + 32561 WIMGVMHSMS 10 57 589.7606137033783 1177.5066744735566 2 589.7589721679688 MULTI HCD FTMS 0 0 0 12312 78903.9453125 0.03573311159947947 34 -0.8759994506835938 7 Unmodified _WIMGVMHSMS_ ENSG00000165762|ENST00000641885|OR4K2 14.838274106304384 0.3723198072575719 2 S{[MS]|[{M(Oxidation (M))|F}A]} 3 7 22.988 0 0 1.9523 0 0 854.3964582643754 0 854.3964582643754 0 4.788559305164167 0 0 0 1 0 0.8807196863200843 0 + S{[MS]|[{M(Oxidation (M))|F}A]} 1.9523 + + 32 + NaN NaN 122316.5 NaN 9317 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12320 57.034 NaN 503840 35 0 88060 0.261 + -1 SAPGCFPYL 9 53 506.23379151314765 1010.4530300930953 2 506.23431396484375 MULTI HCD FTMS 0 0 0 12312 104835.28125 0.24228673307616846 -13 0.35366058349609375 8 Carbamidomethyl (C) _SAPGC(Carbamidomethyl (C))FPYL_ REV__ENST00000528092.5_1_11:36654860-36669653:+|nuORF 7.910154910731844 0.2910521888787154 2 Y{I|L} 2 -1 22.959 0 0 2.2721 0 0 716.2950115103787 0 716.2950115103787 0 11.53212513775344 0 0 0 0.5 0 0 0 Y{I|L} 2.2721 + + 19 NaN NaN 161597.8 NaN 9318 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12321 57.037 NaN 340880 35 0 120330 0.262 -1 LCFLRQWAK 9 52 407.89012929085857 1220.6485584727757 3 407.890380859375 MULTI HCD FTMS 0 0 0 12312 68739.890625 0.33403815626036665 -15 0.3986244201660156 9 Carbamidomethyl (C) _LC(Carbamidomethyl (C))FLRQWAK_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|84 2.735195868890462 0.3302822318919627 2 S 1 -1 11.99 0 0 0.98224 0 0 947.5373902123093 183.05600916080314 1130.5933993731126 0 0 0 0 0 0.5 0 0 0 S 0.98224 - 13 + NaN NaN 136765.1 NaN 9319 3000 12312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12323 57.042 NaN 1172900 35 0 118760 0.327 + 19570 NSTEPDPLL 9 92 493.2455252758412 984.4764976184824 2 493.758544921875 MULTI HCD FTMS 0 0 0 12322 53456.59375 0.612257764731284 -3 0.08184051513671875 1 Unmodified _NSTEPDPLL_ ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 29.84058131909904 0.11198220037953927 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{M(Oxidation (M))|F}SAPA 8 8 46.623 0 0 4.7358 0 0 0 127.04763676509539 127.04763676509539 9.264136098195259 0 0 0 0 0 1.3979400086720375 1.1989700043360187 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{M(Oxidation (M))|F}SAPA 4.7358 - 1278 NaN NaN 268350.8 NaN 9320 3001 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12324 57.046 NaN 1022500 35 0 109670 0.261 + 21618 PYPFTHHWQF 10 87 453.88042653904404 1358.619450217332 3 454.2148132324219 MULTI HCD FTMS 0 0 0 12322 247577.578125 0.7323746453325238 1 -0.02285003662109375 2 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 59.05245873256422 0.044867740978679724 2 PY[RH]V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 8 7 50.411 0 0 3.7105 0 0 0 273.0874719906175 273.0874719906175 11.390756251918212 0 0 0 0 0.7742275032520141 2 0 0.805462187404089 PY[RH]V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 3.7105 - 385 + NaN NaN 246960 NaN 9321 3001 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12325 57.05 NaN 1543900 35 0 132090 0.261 + 1140 AYLEAIHNF 9 86 539.2716685135434 1076.5287840938868 2 539.2719116210938 MULTI HCD FTMS 0 0 0 12322 614158.5625 0.4300536640530496 -3 0.08184051513671875 3 Unmodified _AYLEAIHNF_ ENSG00000042753|ENST00000263270|AP2S1 122.17920374332846 0.0010792739174387011 2 AY{I|L}EA{I|L}HN{M(Oxidation (M))|F} 9 0 + 107.94 0 0 10.027 10.027 91.946 0 0 0 91.05706752988266 13.46787486224656 13.46787486224656 5.9356902261856135 0 3.1677353201839438 2 0.4247425010840047 0.819341519366547 + + AY{I|L}EA{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HGG{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}EA{I|L}HN{M(Oxidation (M))|F};AY{I|L}EA{I|L}HGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{I|L}HN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{I|L}HGG{M(Oxidation (M))|F};AY{[CP]|[EA]}{I|L}{I|L}HN{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}EA{I|L}HGG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}AYA{I|L}HN{M(Oxidation (M))|F} 10.027;9.4754;8.62;8.4776;8.4103;7.983;7.1277;6.9656;6.5074;6.4746 +;+;-;-;-;-;-;-;-;- + 1077 + NaN NaN 327381.2 NaN 9322 3001 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12326 57.053 NaN 342160 35 0 27446 0.261 + 30995 VSEPRYFQL 9 84 569.7985689002368 1137.5825848672735 2 569.7982788085938 MULTI HCD FTMS 0 0 0 12322 121830.21875 0.7676865159662661 1 -0.02285003662109375 4 Unmodified _VSEPRYFQL_ ENSG00000101158|ENST00000652272|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57566845-57568278:+|nuORF;nc|ENSG00000101158|Q8IXH7|NELFCD 43.77239144664712 0.04802738721622131 2 D{M(Oxidation (M))|F}Q{I|L} 4 6 34.667 0 0 3.0474 0 0 616.3216138409259 0 616.3216138409259 0 20.11078274479269 0 0 0 0.3252574989159953 0 0.4247425010840047 0 D{M(Oxidation (M))|F}Q{I|L} 3.0474 - 328 NaN NaN 145043.7 NaN 9323 3001 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12327 57.057 NaN 455600 35 0 35834 0.261 -1 IETHGMAVSW 10 82 573.7656391822765 1145.5167254313528 2 573.7649536132812 MULTI HCD FTMS 0 0 0 12322 153255.3125 0.023523995293522084 35 -0.9022331237792969 5 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 24.020572477871973 0.2864316864133941 2 VSW 3 -1 43.258 0 0 3.7763 0 0 755.3284779279312 0 755.3284779279312 0 26.9145437882748 0 0 0 1.3807196863200843 0 0.3252574989159953 0 VSW 3.7763 + + 479 NaN NaN 160085.7 NaN 9324 3001 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12328 57.06 NaN 307570 35 0 63710 0.261 -1 QIKQEEAMDL 10 62 610.7952916100844 1219.5760302869687 2 610.289306640625 MULTI HCD FTMS 0 0 0 12322 10958.05859375 0.1924287319031057 5 -0.14093017578125 6 Oxidation (M) _QIKQEEAM(Oxidation (M))DL_ ENSG00000156500|ENST00000645433|PABIR3;nc|ENSG00000156500|Q6P4D5-2|PABIR3;nc|ENSG00000156500|Q6P4D5|PABIR3 5.296884461304476 0.4472664531305844 2 W 1 -1 13.979 0 0 1.1463 0 0 1015.4868406891156 0 1015.4868406891156 0 1.2763625255165323 0 0 0 0 0 0 0 W 1.1463 - 8 + NaN NaN 139252.6 NaN 9325 3001 12322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12330 57.065 NaN 1604800 35 0 141440 0.327 + 34692 YPVDLGDKF 9 92 527.2662740009129 1052.5179950686256 2 527.2664794921875 MULTI HCD FTMS 0 0 0 12329 1008619.625 0.9345148193020437 1 -0.036182403564453125 1 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 140.63315402491853 1.8728231636916273E-05 2 YPVD{I|L}GDK{M(Oxidation (M))|F} 9 0 + 124.05 0 0 11.786 11.786 97.742 0 0 0 69.91766587911663 16.478174818886373 16.478174818886373 22.755762612236907 0 3.1549471895720984 1.6989700043360187 1.5114393726401687 0.3054621874040891 + + YPVD{I|L}GDK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}GDK{M(Oxidation (M))|F};YPVPSTDK{M(Oxidation (M))|F};[VP]YD{I|L}GDK{M(Oxidation (M))|F};[VP]DY{I|L}GDK{M(Oxidation (M))|F};[VP]PDG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};[VP]DPG{I|L}D{[HG]|PP}{M(Oxidation (M))|F};[VP]D{I|L}YGDK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}G{[QV]|[N{I|L}]|[RA]|[KV]}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}G[YV]Q 11.786;9.6242;9.1784;8.4851;7.724;7.4333;7.3158;6.677;6.637;6.4981 +;+;-;-;-;-;-;-;-;- + 4012 + NaN NaN 330781.6 NaN 9326 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12331 57.069 NaN 1448000 35 0 245960 0.261 -1 DPRNATSVCI 10 104 566.7740010513621 1131.5334491695241 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12329 635519.0625 0.013624898614928565 37 -0.9612236022949219 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 38.175570920033316 0.1612389583597779 2 P{M(Oxidation (M))|F}STSVSW 8 -1 76.924 0 0 6.7982 0 0 222.09885739017665 0 222.09885739017665 0 57.61684426206969 0 0 0 2.8807196863200843 0 1.079689690656103 0 P{M(Oxidation (M))|F}STSVSW 6.7982 - 2361 + NaN NaN 319120.5 NaN 9327 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12332 57.073 NaN 815670 35 0 99500 0.261 + 4628 EYMEHVYLI 9 79 606.7838322096045 1211.553111486009 2 606.7843017578125 MULTI HCD FTMS 0 0 0 12329 462492.25 0.6604055600654276 -2 0.05567169189453125 3 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 74.42276476219924 0.007657080072768255 2 [YE]{M(Oxidation (M))|F}{[YC]|[HE]}VY{I|L}{I|L} 9 0 + 41.065 0 0 3.3895 3.3895 89.294 0 0 0 16.00379364601565 1.3406651113019308 1.3406651113019308 41.065462321384274 0 2.048455006504028 1.3010299956639813 0 0 + + [YE]{M(Oxidation (M))|F}{[YC]|[HE]}VY{I|L}{I|L} 3.3895 + + 126 + NaN NaN 215943.8 NaN 9328 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12333 57.076 NaN 604830 35 0 110060 0.261 + 5730 FPAGYMYPSM 10 86 598.2435232613002 1194.4724935894003 2 598.2432861328125 MULTI HCD FTMS 0 0 0 12329 278920.625 0.8585203488654505 -14 0.37987518310546875 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 2 [YT][RD]{M(Oxidation (M))|F}YPST 9 6 59.561 0 0 4.9864 0 0 0 60.9778458494856 60.9778458494856 38.46864783421701 0 0 0 0 1.8494850021680094 1.3979400086720375 1.2059771852360797 0 [YT][RD]{M(Oxidation (M))|F}YPST 4.9864 - 713 NaN NaN 176338.6 NaN 9329 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12334 57.08 NaN 862440 35 0 137850 0.261 + 24982 RYVEIVSQF 9 81 570.8058607742139 1139.5971686152277 2 570.8063354492188 MULTI HCD FTMS 0 0 0 12329 256745.3125 0.5269280814695969 -2 0.05567169189453125 5 Unmodified _RYVEIVSQF_ ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41 75.5705956163825 0.007285660612518157 2 E{I|L}VSQ{M(Oxidation (M))|F} 6 3 76.375 0 0 6.7019 0 0 418.232733432203 0 418.232733432203 0 60.17728766960431 0 0 0 2.6549471895720984 0 0.805462187404089 0 + E{I|L}VSQ{M(Oxidation (M))|F} 6.7019 + + 706 NaN NaN 218807.1 NaN 9330 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12335 57.083 NaN 532510 35 0 109450 0.263 + 2126 DFNPLGEGKKW 11 64 430.8883806921103 NaN 0 430.8880615234375 PEAK HCD FTMS 0 0 0 12329 117437.65625 0.31171682082444757 -138 3.40155029296875 6 Unmodified _DFNPLGEGKKW_ REV__ENSG00000090520|ENST00000265028|DNAJB11 4.11662792887243 0.330442455561113 2 NV 2 -1 9.464 0 0 1.1008 0 0 158.43232671449556 485.1923902406227 643.6247169551182 0 0 0 0 0 0 0 0 0 NV 1.1008 - 22 + NaN NaN 174047.2 NaN 9331 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12336 57.086 NaN 465640 35 0 86019 0.261 + 22358 QPNGGEPFL 9 53 479.73509721082627 957.4556414884526 2 479.73504638671875 MULTI HCD FTMS 0 0 0 12329 170888.515625 0.2205217798845683 -5 0.12751388549804688 7 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 32.30548876998284 0.10066689432505688 2 P{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.7806 0 0 582.2392310123284 0 582.2392310123284 0 36.197887582883936 0 0 0 1 0 0 0 + P{M(Oxidation (M))|F}{I|L} 3.7806 + + 24 NaN NaN 163873.6 NaN 9332 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12337 57.09 NaN 536930 35 0 95601 0.261 + 8458 HAAPFQNIL 9 58 505.7744422181891 1009.5343315031782 2 505.7743225097656 MULTI HCD FTMS 0 0 0 12329 77218.40625 0.8299414378152862 -1 0.02285003662109375 8 Unmodified _HAAPFQNIL_ CYFIP1|p.R1034Q|1|0.45|ENSG00000273749|chr15:22875213-22875213|C/T|missense_variant;ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;ENST00000522892.1_1_5:156788429-156810457:+|nuORF;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 7 19.464 0 0 1.928 0 0 765.3554420336203 0 765.3554420336203 0 3.979400086720375 0 0 0 0 0 0 0 + {I|L}{I|L} 1.928 + + 17 NaN NaN 164973.4 NaN 9333 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12338 57.093 NaN 76682 35 0 4474.6 0.261 -1 AYWPEGKRVAM 11 49 441.88751624795566 1322.640719344067 3 441.8875732421875 MULTI HCD FTMS 0 0 0 12329 39636.97265625 0.6465112794055778 4 -0.11808013916015625 9 Oxidation (M) _AYWPEGKRVAM(Oxidation (M))_ ENSG00000130254|ENST00000252542|SAFB2 2.6312355333042263 0.4073809613003177 2 A 1 -1 6.9897 0 0 0.52847 0 0 1116.5350655128154 132.04548059635002 1248.5805461091654 0 0 0 0 0 0 0 0 0 A 0.52847 + + 4 + NaN NaN 101506.6 NaN 9334 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12339 57.096 NaN 183530 35 0 17507 0.261 + 27831 TCDLGTEAQF 10 74 542.7329192036598 1083.4512854741195 2 542.7327880859375 MULTI HCD FTMS 0 0 0 12329 29874.68359375 0.6785924098173699 3 -0.08523178100585938 10 Unmodified _TCDLGTEAQF_ ENST00000486192.1_1_10:108380089-108389119:-|nuORF 17.11289562659939 0.35104376501799556 2 AE{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}AQ{M(Oxidation (M))|F} 8 5 46.529 0 0 4.2945 0 0 130.0004930930632 0 130.0004930930632 0 39.539106406846045 0 0 0 1.2614393726401687 0 0.3494850021680094 0.3252574989159953 AE{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}AQ{M(Oxidation (M))|F} 4.2945 - 189 + NaN NaN 121009.3 NaN 9335 3002 12329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12341 57.101 NaN 1282700 35 0 232110 0.327 + 8426 GYSEHFVEF 9 92 557.7454155041603 1113.4762780751205 2 557.7456665039062 MULTI HCD FTMS 0 0 0 12340 705994.3125 0.17477416878864682 7 -0.17343521118164062 1 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 100.37149154755038 0.004254194004462789 2 {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4 5 48.175 0 0 4.3266 0 0 573.2184315412125 0 573.2184315412125 0 32.769250191953674 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4.3266 + + 481 NaN NaN 283023.3 NaN 9336 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12342 57.106 NaN 757800 35 0 78236 0.261 + 11991 KFYTDPSYF 9 112 584.2714816089367 1166.5284102846733 2 584.2720336914062 MULTI HCD FTMS 0 0 0 12340 218931.140625 0.9067953380098203 1 -0.02619171142578125 2 Unmodified _KFYTDPSYF_ ENSG00000132970|ENST00000335327|WASF3;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;nc|ENSG00000158195|Q9Y6W5-2|WASF2 63.960520009940105 0.0120409805053046 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YTD[PS]Y{M(Oxidation (M))|F} 9 0 + 58.28 0 0 4.996 4.996 85.353 0 0 0 3.65279269351241 16.29837826940792 3.65279269351241 7.315986760461257 0 2.5114393726401687 0 0.7302046884880937 0 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YTD[PS]Y{M(Oxidation (M))|F};[YN]{I|L}[YT][PS]Y{M(Oxidation (M))|F};[NP]{[QV]|[N{I|L}]|[RA]|[KV]}TD[PS]Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[YT][PS]Y{M(Oxidation (M))|F};[YQ]V[YT][PS]Y{M(Oxidation (M))|F};[YN][HS]WWK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{[NV]|[RG]}V{[MG]|[TS]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}NYEK;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQ{I|L}V[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F} 4.996;4.3689;3.2082;3.0437;3.0195;2.0441;1.4894;1.4317;1.4215;1.2818 +;-;-;-;-;-;-;-;-;- + 1941 NaN NaN 209163.5 NaN 9337 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12343 57.109 NaN 103070 35 0 14753 0.263 -1 MRAQGWNYGQF 11 42 458.5403578182038 1372.5992440548114 3 458.54022216796875 MULTI HCD FTMS 0 0 0 12340 27810.36328125 0.3634379563742931 1 -0.02619171142578125 3 Oxidation (M) _M(Oxidation (M))RAQGWNYGQF_ TGM6|p.I172M|1|0.33|ENSG00000166948|chr20:2396597-2396597|A/G|missense_variant 2.6312355333042263 0.4073809613003177 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.4924 0 0 1207.5204609510988 0 1207.5204609510988 0 15 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.4924 + + 17 + NaN NaN 107349.7 NaN 9338 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12344 57.112 NaN 515860 35 0 115580 0.261 + 20972 PLIGLRAAE 9 64 470.28296868172527 NaN 0 470.2970886230469 PEAK HCD FTMS 0 0 0 12340 16255.599609375 1 0 0 4 Unmodified _PLIGLRAAE_ REV__ENSG00000091009|ENST00000265271|RBM27 14.581692164780916 0.22376707489839515 2 P{I|L}G{I|L}DK 6 -1 40.31 0 0 4.2949 0 0 113.0558331917152 199.1091250055297 312.1649581972449 0 0 0 0 0 0 0 1.4559771852360797 0 P{I|L}G{I|L}DK 4.2949 - 148 + NaN NaN 167008.9 NaN 9339 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12345 57.116 NaN 255540 35 0 45747 0.261 -1 0 51 516.3015368906405 515.2942604240404 1 516.301513671875 MULTI HCD FTMS 0 0 0 12340 35216.88671875 0.16862634084298928 7 -0.17343521118164062 5 NaN NaN 2 {M(Oxidation (M))|F}[{I|L}A] 3 -1 5.9421 0 0 1.1532 0 0 166.13161501564042 0 166.13161501564042 0 3.0102999566398125 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[{I|L}A] 1.1532 - 8 + NaN NaN 131044.8 NaN 9340 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12346 57.119 NaN 102200 35 0 9334.7 0.261 -1 EMGSKCLS 8 49 435.68823505021646 NaN 0 435.88372802734375 PEAK HCD FTMS 0 0 0 12340 5024.53955078125 1 0 0 6 Oxidation (M) _EM(Oxidation (M))GSKCLS_ ENST00000502584.5_1_4:77952330-77952654:+|nuORF 2.302733041254933 0.38822285293237185 2 VV 2 -1 12.474 0 0 1.4349 0 0 131.98552664164544 536.2157686822874 668.2012953239328 0 0 0 0 0 0.5 0 0 0 VV 1.4349 - 4 + NaN NaN 95554.9 NaN 9341 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12347 57.122 NaN 356610 35 0 42056 0.261 + 30369 VLIYPCQCF 9 87 543.2617191732542 1084.5088854133082 2 543.27978515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VLIYPCQCF_ ENST00000465368.5_1_3:100064894-100074109:+|nuORF 9.347437153973935 0.2795965555214564 2 MAE{M(Oxidation (M))|F}Q[KQ]G{M(Oxidation (M))|F} 9 7 + 45.583 0 0 4.2031 4.2031 85.832 0 0 0 29.129712596891153 13.645162531850872 13.645162531850872 9.208187539523749 0 0 0 0 0 MAE{M(Oxidation (M))|F}Q[KQ]G{M(Oxidation (M))|F};MAE{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}AAG{M(Oxidation (M))|F};MAE{M(Oxidation (M))|F}[AG][KQ]G{M(Oxidation (M))|F};MAE{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[QA]{M(Oxidation (M))|F};[{I|L}V]{[YC]|[HE]}Q{M(Oxidation (M))|F}E[PS];[{I|L}V]{[YC]|[HE]}Q{M(Oxidation (M))|F}N[QA];[{I|L}V]{[YC]|[HE]}[AG]{M(Oxidation (M))|F}E[PS];[{I|L}V]{[YC]|[HE]}[AG]{M(Oxidation (M))|F}N[QA];[{I|L}V]{[YC]|[HE]}Q{M(Oxidation (M))|F}GG[QA];MAE{M(Oxidation (M))|F}[SG][{I|L}V][MT] 4.2031;3.3541;3.3541;3.0293;2.8198;2.1753;1.9707;1.3262;1.3262;1.3004 -;-;-;-;-;-;-;-;-;- 352 + NaN NaN 143891.6 NaN 9342 3003 12340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12349 57.127 NaN 1063700 35 0 298830 0.327 + 32008 VYPLMKEYF 9 74 603.2993449273582 1204.5841369215163 2 603.2998657226562 MULTI HCD FTMS 0 0 0 12348 511635.25 0.17695001013778305 8 -0.18936920166015625 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 69.10491478415734 0.009377850133389008 2 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 82.484 0 0 6.8475 6.8475 88.08 0 0 0 19.20310309343897 16.53212513775344 16.53212513775344 6.5321251377534395 0 1.8494850021680094 2 0.7614393726401688 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YE]K{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[Y{I|L}]W{[TV]|[{I|L}S]}[{I|L}T]Y{M(Oxidation (M))|F} 6.8475;6.3053;5.3159;5.2534;4.9939;4.8726;4.6492;4.5904;4.107;3.8581 -;+;-;-;-;-;-;-;-;- + 804 NaN NaN 244823.7 NaN 9343 3004 12348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12350 57.132 NaN 933200 35 0 71169 0.261 + 35460 YYEYNHDLF 9 93 632.2696564926487 1262.5247600520972 2 632.2696533203125 MULTI HCD FTMS 0 0 0 12348 527769 0.7497192649251266 3 -0.085296630859375 2 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 60.07390631473393 0.0174780869009295 2 [YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F} 10 7 + 49.485 0 0 3.9195 3.9195 82.709 0 0 0 3.806423891230395 19.61635608164464 3.806423891230395 4.344471979274189 0 0 1.5228787452803376 0 0.9361818737241734 [YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F};YYHT[QP]EYY;YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};[YN]A{[ES]|[DT]|[{I|L}C]}YW{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;YYHTY{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;[YN]WTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYHT[EP]QYY;[YN]WT[QP]EYY;[YN]WTY{[DA]|[EG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S;YYHT[EP][SG]Y{M(Oxidation (M))|F} 3.9195;3.5754;3.5741;3.4392;3.3356;3.2997;3.1369;3.0591;2.8193;2.8183 -;-;-;-;-;-;-;-;-;- 2017 NaN NaN 237811.5 NaN 9344 3004 12348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12351 57.135 NaN 652480 35 0 59570 0.261 + 9068 HPEYGEVIQL 10 63 592.801208023902 NaN 0 592.8013305664062 PEAK HCD FTMS 0 0 0 12348 177475.171875 0.12858645646662548 -9 0.23223876953125 3 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 32.78568957990786 0.1770653276021985 2 Q{I|L}V 3 9 28.94 0 0 2.4451 0 0 131.09535965277115 709.2587187263249 840.3540783790961 0 0 0 0 0 1.274227503252014 0 0 0 Q{I|L}V 2.4451 - 21 + NaN NaN 184650.2 NaN 9345 3004 12348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12352 57.139 NaN 354220 35 0 18381 0.261 + 27300 SYQKLLFKF 9 86 587.3371881067334 1172.6598232802667 2 587.3377685546875 MULTI HCD FTMS 0 0 0 12348 151408.015625 0.9146751161902309 -2 0.062374114990234375 4 Unmodified _SYQKLLFKF_ ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant 61.08992128646608 0.016056751534446034 2 {M(Oxidation (M))|F}{I|L}{I|L}KQCE 7 8 53.529 0 0 4.5648 0 0 293.17381484199376 0 293.17381484199376 0 30.85313775929434 0 0 0 2.388210492164445 0 0 0.3252574989159953 {M(Oxidation (M))|F}{I|L}{I|L}KQCE 4.5648 - 553 NaN NaN 154115.2 NaN 9346 3004 12348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12353 57.142 NaN 149030 35 0 11151 0.262 + -1 MRLGCVQGL 9 58 496.75589573055834 991.4972385279167 2 496.7559509277344 MULTI HCD FTMS 0 0 0 12348 39315.6484375 0.8299925591979997 1 -0.022857666015625 5 Oxidation (M) _M(Oxidation (M))RLGCVQGL_ REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF 32.30548876998284 0.10066689432505688 2 VQG{I|L} 4 -1 46.67 0 0 4.707 0 0 576.2540150373062 0 576.2540150373062 0 28.086681479559203 0 0 0 1.5 0 0 0.4247425010840047 VQG{I|L} 4.707 + + 58 NaN NaN 121201 NaN 9347 3004 12348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12354 57.145 NaN 133420 35 0 5713.2 0.261 + -1 YNAMWLMRM 9 48 632.2696564926487 1262.5247600520972 2 634.2763671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 3 Oxidation (M) _YNAM(Oxidation (M))WLM(Oxidation (M))RM(Oxidation (M))_ REV__sp|P12978|EBNA2_EBVB9Epstein-Barrnuclearantigen2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA2PE=1SV=1 1.844237919475145 0.33703635659052655 2 YC(Carbamidomethyl (C)) 2 -1 19.464 0 0 1.5417 0 0 0 936.3868502252561 936.3868502252561 12.474250108400469 0 0 0 0 0 0 0 0 YC(Carbamidomethyl (C)) 1.5417 - 13 + NaN NaN 114665.9 NaN 9348 3004 12348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12356 57.15 NaN 1882300 35 0 331880 0.327 + 27563 TADPLDYRL 9 95 532.274602694287 1062.5346524553738 2 532.2747802734375 MULTI HCD FTMS 0 0 0 12355 1027693 0.8568040707016158 1 -0.032848358154296875 1 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 87.25819977447905 0.004597812622239197 2 TADP{I|L}DYR{I|L} 9 0 + 93.382 0 0 8.7886 8.7886 90.933 0 0 0 5.994850021680094 5.994850021680094 5.994850021680094 5.994850021680094 0 2.6989700043360187 1.6989700043360187 0.3494850021680094 0.3054621874040891 + + TADP{I|L}DYR{I|L};[TA]DP{I|L}DYR{I|L};TADP{I|L}DHV[VP];T[{I|L}V]HD{I|L}PD[PG];{[DA]|[EG]}TP{I|L}DYR{I|L};[DP]GP[KA]{I|L}PD[PG];[{I|L}P]DATDYR{I|L};[DP][TA]{I|L}DYR{I|L};[DP]{I|L}ATDYR{I|L};[{I|L}P]DD[TA]YR{I|L} 8.7886;8.2244;7.2282;5.9498;4.9968;4.0198;3.3808;3.0786;2.6015;2.5158 +;+;-;-;-;-;-;-;-;- + 1078 + NaN NaN 371358.3 NaN 9349 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12357 57.155 NaN 1185800 35 0 148530 0.261 + 25301 SAYEFYHAL 9 82 550.7560475629205 1099.4975421926408 2 550.7561645507812 MULTI HCD FTMS 0 0 0 12355 572035.375 0.16519652297262868 7 -0.16651153564453125 2 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 112.59319219568356 0.00251905749371435 2 {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L} 9 0 + 86.001 0 0 7.8219 7.8219 90.421 0 0 0 8.010299956639813 10.82030518180558 8.010299956639813 8.010299956639813 0 3 0 1.5189301784845295 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};[YE]{[SA]|[TG]}{M(Oxidation (M))|F}YHA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SE{M(Oxidation (M))|F}YHA{I|L};[YE]{M(Oxidation (M))|F}{[SA]|[TG]}YHA{I|L};[{M(Oxidation (M))|F}E]{[CA]|SS}{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]Y{[SA]|[TG]}YHA{I|L};{[SA]|[TG]}YT[WP]{[NV]|[RG]}Y;[Y{I|L}]{[CP]|[EA]}C[KA][R{M(Oxidation (M))|F}];{[SA]|[TG]}YT[WP]{[MS]|[{M(Oxidation (M))|F}A]}{[SA]|[TG]} 7.8219;7.0933;6.9236;6.8196;5.5349;5.492;4.1033;1.092;0.71451;0.65005 +;-;-;-;-;-;-;-;-;- + 1310 NaN NaN 277006.7 NaN 9350 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12358 57.158 NaN 758560 35 0 53132 0.261 + -1 MLIMLYML 8 95 522.2699673862254 1042.5253818392507 2 522.7716674804688 MULTI HCD FTMS 0 0 0 12355 310182.78125 0.21288433971864523 6 -0.15031814575195312 3 Oxidation (M) _MLIM(Oxidation (M))LYML_ REV__ENSG00000174970|ENST00000641071|OR10AG1;REV__nc|ENSG00000174970|Q8NH19|OR10AG1 32.45364647766026 0.3278715449852315 2 HPSAQ{I|L}PE 8 -1 66.989 0 0 6.4257 0 0 165.07861525703282 0 165.07861525703282 0 18.624701185557896 0 0 0 2.2971062485323515 0 1.3129529932484498 0.4247425010840047 HPSAQ{I|L}PE 6.4257 - 1348 NaN NaN 225936.2 NaN 9351 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12359 57.162 NaN 1232700 35 0 100470 0.261 + 29455 TYTVRTFAL 9 104 536.2952313394444 1070.5759097456887 2 536.2953491210938 MULTI HCD FTMS 0 0 0 12355 204112.984375 0.8213657065038024 -2 0.04904937744140625 4 Unmodified _TYTVRTFAL_ ENSG00000142949|ENST00000359947|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF;nc|ENSG00000142949|P10586-2|PTPRF 41.95555342248728 0.056367691549927025 2 [YT]KSKVAQ{M(Oxidation (M))|F} 9 7 + 46.835 0 0 4.3747 4.3747 84.248 0 0 0 6.781193895133299 6.781193895133299 6.781193895133299 6.781193895133299 0 0.48264464781038285 1.6989700043360187 0.3252574989159953 0.6694451763165201 [YT]KSKVAQ{M(Oxidation (M))|F};[YT]KA{I|L}[H{I|L}]PE;[YT]KAH{I|L}{I|L}PE;[YT][KS]KAVQ{M(Oxidation (M))|F};[YT]KSKVQA{M(Oxidation (M))|F};[YT]KAK[YN]A{I|L};[YT]KSKVAGA{M(Oxidation (M))|F};[YT]TV{I|L}TRA{M(Oxidation (M))|F};[YT][KS]KAN{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EAR{I|L}{I|L}PE 4.3747;3.7413;3.179;2.922;2.7993;2.601;2.4914;2.4064;2.2806;1.765 -;-;-;-;-;-;-;-;-;- 1839 + NaN NaN 283625.5 NaN 9352 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12360 57.165 NaN 487760 35 0 62846 0.261 + 4823 EYVSQHLVF 9 69 561.2847403512213 1120.5549277692426 2 561.2847290039062 MULTI HCD FTMS 0 0 0 12355 214666.671875 0.9354503207258165 -1 0.022857666015625 5 Unmodified _EYVSQHLVF_ ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 65.23502041540118 0.010630085227462206 2 [YE]V{[QS]|[NT]}[H{I|L}]V{M(Oxidation (M))|F} 9 0 + 46.136 0 0 4.1172 4.1172 90.179 0 0 0 16.086127766899025 3.912414484000095 3.912414484000095 46.13553413038488 0 1.555462187404089 2 0 0 + + [YE]V{[QS]|[NT]}[H{I|L}]V{M(Oxidation (M))|F} 4.1172 + + 315 + NaN NaN 168366.5 NaN 9353 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12361 57.168 NaN 163910 35 0 9695.1 0.261 -1 VYKAFVMETF 10 47 625.8098371210849 1249.6051213089697 2 626.3110961914062 MULTI HCD FTMS 0 0 0 12355 63558.73046875 0.3879818406480864 -14 0.3769264221191406 6 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 5.731851221503515 0.44496410492002586 2 QKMP 4 -1 17.167 0 0 1.3738 0 0 262.16958771697597 500.18845544986567 762.3580431668416 0 0 0 0 0 0 0 0 0 QKMP 1.3738 - 30 + NaN NaN 114498.1 NaN 9354 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12362 57.171 NaN 143580 35 0 6192.4 0.261 + -1 YNFFLECHM 9 54 638.7584079458949 1275.5022629585897 2 638.758544921875 MULTI HCD FTMS 0 0 0 12355 43663.76171875 0.6896284241894296 1 -0.032848358154296875 7 Carbamidomethyl (C),Oxidation (M) _YNFFLEC(Carbamidomethyl (C))HM(Oxidation (M))_ REV__PTH2R|p.S403Y|1|0.5|ENSG00000144407|chr2:208489143-208489143|C/A|missense_variant 4.75600775471527 0.31496297302216103 2 [YN]AW{M(Oxidation (M))|F}EY{[{M(Oxidation (M))|F}H]|[RQ]} 9 -1 + 37.016 0 0 2.9021 2.9021 86.484 0 0 0 20.02629038230311 7.147642715192511 7.147642715192511 13.156753288559813 0 0.6435078169319297 1.5228787452803376 0 0 [YN]AW{M(Oxidation (M))|F}EY{[{M(Oxidation (M))|F}H]|[RQ]};[YN]A{[CP]|[EA]}[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]};[C(Carbamidomethyl (C))M]A[TA]{M(Oxidation (M))|F}EY{[{M(Oxidation (M))|F}H]|[RQ]};[C(Carbamidomethyl (C))M]A{[DA]|[EG]}[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]} 2.9021;1.8706;0.9862;0.67663 -;-;-;- 69 + NaN NaN 108611.2 NaN 9355 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12363 57.175 NaN 131540 35 0 5719.6 0.261 + 14009 KYTEITATYF 10 47 618.8107948665202 1235.6070367998402 2 618.811279296875 MULTI HCD FTMS 0 0 0 12355 48709.10546875 0.4625662269884122 4 -0.11480331420898438 8 Unmodified _KYTEITATYF_ ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL 4.5288652416199255 0.4513317009562028 2 TY{M(Oxidation (M))|F} 3 7 26.198 0 0 2.1202 0 0 806.4224110334 0 806.4224110334 0 24.604093769761874 0 0 0 0 0 0 0 + TY{M(Oxidation (M))|F} 2.1202 + + 5 NaN NaN 107895.5 NaN 9356 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12364 57.178 NaN 137920 35 0 26330 0.264 + -1 VFCFNCDLRAF 11 58 464.54438537134735 1390.611326714242 3 464.8777770996094 MULTI HCD FTMS 0 0 0 12355 19243.154296875 0.35140491775248256 11 -0.26490020751953125 9 Carbamidomethyl (C) _VFC(Carbamidomethyl (C))FNCDLRAF_ REV__ENST00000585159.5_1_18:70204665-70204911:-|nuORF 4.11662792887243 0.40086653484894175 2 {M(Oxidation (M))|F} 1 -1 18.227 0 0 1.3107 0 0 1225.5328793038889 0 1225.5328793038889 0 15.127881306118454 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.3107 + + 75 + NaN NaN 122814.5 NaN 9357 3005 12355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12366 57.183 NaN 817570 35 0 95199 0.327 + 19571 NSTEPDPLL 9 74 493.2455252758412 984.4764976184824 2 493.75830078125 MULTI HCD FTMS 0 0 0 12365 41282.4140625 0.4728224674176434 1 -0.029590606689453125 1 Unmodified _NSTEPDPLL_ ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 24.990960013464015 0.14443998892849796 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}H]|[RQ]}SAPA 8 8 37.573 0 0 3.8166 0 0 0 127.04709581224485 127.04709581224485 16.882068326740836 0 0 0 0 0 1.3979400086720375 1.1989700043360187 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}H]|[RQ]}SAPA 3.8166 - 405 NaN NaN 214203.7 NaN 9358 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12367 57.187 NaN 821220 35 0 143430 0.261 -1 HFDMAVYL 8 61 506.23379151314765 1010.4530300930953 2 506.23394775390625 MULTI HCD FTMS 0 0 0 12365 281161.4375 0.6497973329839692 -7 0.18999099731445312 2 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VY{I|L} 3 -1 34.253 0 0 3.3898 0 0 617.2255726544937 0 617.2255726544937 0 29.648415687162952 0 0 0 0.805462187404089 0 0 0 VY{I|L} 3.3898 + + 40 NaN NaN 227489.5 NaN 9359 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12368 57.191 NaN 482060 35 0 34202 0.261 + 1374 AYPHNLMTF 9 70 547.2602485510344 1092.5059441688686 2 547.26025390625 MULTI HCD FTMS 0 0 0 12365 179094.09375 0.6042322322221007 -3 0.08189773559570312 3 Unmodified _AYPHNLMTF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 61.357469665136826 0.01568246967499496 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YG[Q{I|L}]MT{M(Oxidation (M))|F} 9 3 + 64.147 0 0 5.8715 5.8715 84.393 0 0 0 22.464169411070927 30.184509632822305 22.464169411070927 1.5490195998574308 0 1.4247425010840047 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YG[Q{I|L}]MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[QV]|[N{I|L}]|[RA]|[KV]}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YG{I|L}{I|L}C(Carbamidomethyl (C))S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[{I|L}V]C(Carbamidomethyl (C))S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YG{I|L}{I|L}[CG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[{I|L}V][CG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YG[Q{I|L}]Y{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[QV]|[N{I|L}]|[RA]|[KV]}Y{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YG{I|L}{I|L}Y{[QC]|[C(Carbamidomethyl (C))A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[{I|L}V]Y{[QC]|[C(Carbamidomethyl (C))A]} 5.8715;5.7297;5.4348;5.293;4.5919;4.4502;3.3619;3.2201;2.8266;2.6848 -;-;-;-;-;-;-;-;-;- 471 NaN NaN 174802.3 NaN 9360 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12369 57.194 NaN 547070 35 0 233240 0.263 + -1 WSIFKCRPK 9 45 407.89012929085857 1220.6485584727757 3 407.8901062011719 MULTI HCD FTMS 0 0 0 12365 134071.265625 0.6515127965679517 -9 0.24559402465820312 4 Carbamidomethyl (C) _WSIFKC(Carbamidomethyl (C))RPK_ REV__ENST00000261254.7_1_12:4412013-4412226:+|nuORF 4.897010918128616 0.31389406404703984 2 S 1 -1 14.877 0 0 1.2188 0 0 947.5374233179432 183.05642114810783 1130.593844466051 0 0 0 0 0 0.5 0 0.28872548999643577 0 S 1.2188 + + 8 + NaN NaN 184439.7 NaN 9361 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12370 57.198 NaN 389340 35 0 139110 0.261 -1 0 47 432.2802818905755 431.2730054239755 1 432.2802734375 MULTI HCD FTMS 0 0 0 12365 120477.0390625 0.0009662218803314736 110 -2.8541107177734375 5 NaN NaN 2 {I|L} 1 -1 15.485 0 0 3.5904 0 0 300.17870413178645 0 300.17870413178645 0 1.9897000433601875 0 0 0 0 0 0 0 {I|L} 3.5904 - 3 + NaN NaN 160558.5 NaN 9362 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12371 57.201 NaN 224930 35 0 10323 0.261 + 32562 WIMGVMHSMS 10 63 589.7606137033783 1177.5066744735566 2 589.758544921875 MULTI HCD FTMS 0 0 0 12365 50680.12890625 0.022951434112840792 40 -1.0272216796875 6 Unmodified _WIMGVMHSMS_ ENSG00000165762|ENST00000641885|OR4K2 10.073929032068715 0.4168838835836452 2 S{[MS]|[{M(Oxidation (M))|F}A]} 3 7 22.76 0 0 1.9329 0 0 854.3957258425004 0 854.3957258425004 0 8.807196863200842 0 0 0 1 0 0.3807196863200844 0 + S{[MS]|[{M(Oxidation (M))|F}A]} 1.9329 + + 18 + NaN NaN 144250.2 NaN 9363 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12372 57.204 NaN 278280 35 0 18650 0.262 + 15923 LPNAFDGPI 9 71 472.24783609818707 942.4811192631742 2 472.2474365234375 MULTI HCD FTMS 0 0 0 12365 40626.60546875 0.01751465939267597 18 -0.4584197998046875 7 Unmodified _LPNAFDGPI_ CD44-PDHX|1|fusion;CD44-PDHX|2|fusion;CD44-PDHX|3|fusion;CD44-PDHX|4|fusion;CD44-PDHX|6|fusion;CD44-PDHX|7|fusion;ENSG00000026508|ENST00000428726|CD44;ENST00000525209.5_1_11:35208413-35222108:+|nuORF;ENST00000531118.5_1_11:35198231-35211698:+|nuORF;nc|ENSG00000026508|P16070-10|CD44;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-15|CD44;nc|ENSG00000026508|P16070-16|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-18|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-9|CD44 20.453626601364224 0.18364154288633264 2 [YE][RV]YT{I|L} 7 8 + 39.129 0 0 4.1517 4.1517 86.866 0 0 0 8.110301511597626 22.020855057151394 8.110301511597626 10.751670397432846 0 0.3807196863200844 1.6989700043360187 0.3807196863200844 0 [YE][RV]YT{I|L};[{I|L}P]{M(Oxidation (M))|F}PD{[QN]|[E{I|L}]|[KN]}{I|L};[{I|L}P]{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}P{I|L};[{I|L}P]{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};[YT][{I|L}A]HEP{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[NV]|[RG]}P{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VP]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}P{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[VP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L} 4.1517;3.0109;2.7792;2.7265;2.5141;1.3502;0.33773;0.28502 -;-;-;-;-;-;-;- 208 NaN NaN 128210.4 NaN 9364 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12373 57.208 NaN 209930 35 0 15745 0.261 -1 MVTSLEESL 9 68 512.746788989522 1023.479025045844 2 512.7461547851562 MULTI HCD FTMS 0 0 0 12365 58289.43359375 0.48078263904363205 -5 0.14093017578125 8 Oxidation (M) _M(Oxidation (M))VTSLEESL_ ENSG00000047410|ENST00000367478|TPR 36.12702656103203 0.08312389501731911 2 EES{I|L} 4 -1 50.433 0 0 4.9276 0 0 547.2665272443375 0 547.2665272443375 0 39.15664365890468 0 0 0 1.4247425010840047 0 0.4247425010840047 0 EES{I|L} 4.9276 + + 97 NaN NaN 116563.2 NaN 9365 3006 12365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12375 57.213 NaN 1580600 35 0 139790 0.327 + 1141 AYLEAIHNF 9 90 539.2716685135434 1076.5287840938868 2 539.2719116210938 MULTI HCD FTMS 0 0 0 12374 736575.0625 0.5157736516589378 3 -0.061946868896484375 1 Unmodified _AYLEAIHNF_ ENSG00000042753|ENST00000263270|AP2S1 147.05914393524117 1.1935124485855994E-05 2 AY{I|L}EA{I|L}HN{M(Oxidation (M))|F} 9 0 + 112.48 0 0 10.448 10.448 95.636 0 0 0 84.10850666067282 14.973024840566467 14.973024840566467 11.192803136799157 0 3.1989700043360187 1.6989700043360187 0.75 0.9163865622122673 + + AY{I|L}EA{I|L}HN{M(Oxidation (M))|F};AY{I|L}[DV]VHN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HN{M(Oxidation (M))|F};AY{I|L}EA{I|L}HGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EA{I|L}HGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{I|L}HN{M(Oxidation (M))|F};AY{I|L}[DV]VHGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{I|L}HGG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}AYA{I|L}HN{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YAA{I|L}HN{M(Oxidation (M))|F} 10.448;9.4083;9.3253;8.7414;8.1162;7.8076;7.7017;6.5986;6.2589;6.1231 +;-;+;-;-;-;-;-;-;- + 1358 + NaN NaN 336593.2 NaN 9366 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12376 57.217 NaN 744100 35 0 90115 0.261 + 4629 EYMEHVYLI 9 70 606.7838322096045 1211.553111486009 2 606.7841796875 MULTI HCD FTMS 0 0 0 12374 518410 0.7402520721017884 3 -0.061946868896484375 2 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 67.34385681178166 0.00994769994983633 2 VY{I|L}{I|L} 4 5 43.175 0 0 3.5636 0 0 705.2432320025239 0 705.2432320025239 0 30.472287753157516 0 0 0 1.4247425010840047 0 0 0 + VY{I|L}{I|L} 3.5636 + + 112 NaN NaN 209089.8 NaN 9367 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12377 57.221 NaN 1288600 35 0 218040 0.261 -1 DPRNATSVCI 10 91 566.7740010513621 1131.5334491695241 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12374 596342.125 0.012784983916884566 42 -1.0729484558105469 3 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 26.268140514670165 0.2654086933305545 2 P{M(Oxidation (M))|F}STSVSW 8 -1 75.731 0 0 6.6928 0 0 222.09893811370915 0 222.09893811370915 0 56.85968122010851 0 0 0 2.774227503252014 0 1.0669015600442577 0 P{M(Oxidation (M))|F}STSVSW 6.6928 - 1956 + NaN NaN 293458.3 NaN 9368 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12378 57.224 NaN 679240 35 0 50741 0.261 + -1 MLVDQFRE 8 79 527.2550641861187 NaN 0 527.266357421875 PEAK HCD FTMS 0 0 0 12374 12132.9775390625 1 0 0 4 Oxidation (M) _M(Oxidation (M))LVDQFRE_ REV__ENSG00000171914|ENST00000636159|TLN2 23.1484247019978 0.3827488267290106 2 PVD{I|L}GDK 7 -1 41.789 0 0 3.9705 0 0 163.04181887948192 162.05593286685783 325.0977517463398 0 0 0 0 0 0 0 1.5114393726401687 0 PVD{I|L}GDK 3.9705 - 514 + NaN NaN 201784.5 NaN 9369 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12379 57.227 NaN 503760 35 0 40258 0.261 -1 0 88 582.769221728906 1163.523890524612 2 582.769775390625 MULTI HCD FTMS 0 0 0 12374 178676.796875 0.018482566966629307 42 -1.0729484558105469 5 NaN NaN 2 SVS[YT]VSW 8 -1 51.768 0 0 4.4492 0 0 236.0786561351061 0 236.0786561351061 0 31.713271985608532 0 0 0 2.594187677400525 0 0.3252574989159953 0 SVS[YT]VSW 4.4492 - 1472 + NaN NaN 171466.7 NaN 9370 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12380 57.231 NaN 1026200 35 0 42810 0.261 + 28115 TIIDILTKR 9 99 536.8396589120555 1071.6647648909109 2 536.839599609375 MULTI HCD FTMS 0 0 0 12374 158050.40625 0.8025683836062626 -2 0.06243896484375 6 Unmodified _TIIDILTKR_ ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF 43.981846655682396 0.04706587046877104 2 [{I|L}T]{I|L}D{I|L}{I|L}TKR 9 0 + 66.576 0 0 6.2124 6.2124 93.873 0 0 0 41.45464151309919 11.611592866953167 11.611592866953167 66.57563724748145 0 1.2753187046026266 2 0 0 + + [{I|L}T]{I|L}D{I|L}{I|L}TKR 6.2124 + + 951 + NaN NaN 242851.3 NaN 9371 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12381 57.234 NaN 320040 35 0 34431 0.261 + 21619 PYPFTHHWQF 10 63 453.88042653904404 1358.619450217332 3 454.2147521972656 MULTI HCD FTMS 0 0 0 12374 77877.7890625 0.23037513564791656 7 -0.14325714111328125 7 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 18.721224879955976 0.3359999958351898 2 PY 2 8 45.217 0 0 3.3281 0 0 0 1095.4813736460999 1095.4813736460999 17.25772496747986 0 0 0 0 0.4247425010840047 2 0 0 + PY 3.3281 + + 30 + NaN NaN 148676.2 NaN 9372 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12382 57.237 NaN 150770 35 0 14947 0.261 -1 VPDGIYSVM 9 45 498.7390179343109 NaN 0 498.73870849609375 PEAK HCD FTMS 0 0 0 12374 32845.18359375 0.6028017443781942 3 -0.061946868896484375 8 Oxidation (M) _VPDGIYSVM(Oxidation (M))_ ENST00000558500.5_1_15:99796138-99837514:+|nuORF;ENST00000560213.1_1_15:99796138-99796378:+|nuORF 16.942295170755138 0.2079222001251384 2 V 1 -1 16.99 0 0 1.7067 0 0 731.3491468531937 162.02301965885002 893.3721665120437 0 0 0 0 0 1 0 0 0 V 1.7067 + + 6 + NaN NaN 111926.6 NaN 9373 3007 12374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12384 57.242 NaN 1126400 35 0 209850 0.327 + 22359 QPNGGEPFL 9 64 479.73509721082627 957.4556414884526 2 479.7349548339844 MULTI HCD FTMS 0 0 0 12383 712742.375 0.9197529544879529 1 -0.022846221923828125 1 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 74.92900055777586 0.007493270374442853 2 EP{M(Oxidation (M))|F}{I|L} 4 5 55.235 0 0 5.7689 0 0 453.19798476386876 0 453.19798476386876 0 39.26259015425437 0 0 0 1.3252574989159953 0 1.1549471895720984 0 + EP{M(Oxidation (M))|F}{I|L} 5.7689 + + 157 NaN NaN 251878.5 NaN 9374 3008 12383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12385 57.247 NaN 593220 35 0 86675 0.261 + 8427 GYSEHFVEF 9 76 557.7454155041603 1113.4762780751205 2 557.7457275390625 MULTI HCD FTMS 0 0 0 12383 298752.375 0.07395838336057291 12 -0.2775764465332031 2 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 67.34385681178166 0.00994769994983633 2 {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 4 5 38.092 0 0 3.421 0 0 573.2189808576187 0 573.2189808576187 0 17.220938031831565 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + {M(Oxidation (M))|F}VE{M(Oxidation (M))|F} 3.421 + + 213 NaN NaN 172780.5 NaN 9375 3008 12383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12386 57.25 NaN 456230 35 0 69875 0.261 + 24983 RYVEIVSQF 9 78 570.8058607742139 1139.5971686152277 2 570.80615234375 MULTI HCD FTMS 0 0 0 12383 186453.09375 0.3826647116439892 4 -0.074554443359375 3 Unmodified _RYVEIVSQF_ ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41 59.05245873256422 0.018907022117377846 2 E{I|L}VSQ{M(Oxidation (M))|F} 6 3 71.063 0 0 6.2358 0 0 418.2328053205094 0 418.2328053205094 0 52.47933455448525 0 0 0 2.1861818737241734 0 0.805462187404089 0 + E{I|L}VSQ{M(Oxidation (M))|F} 6.2358 + + 555 NaN NaN 167482.5 NaN 9376 3008 12383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12387 57.253 NaN 555370 35 0 104680 0.261 + 5731 FPAGYMYPSM 10 72 598.2435232613002 1194.4724935894003 2 598.2434692382812 MULTI HCD FTMS 0 0 0 12383 248120.75 0.7637180393194559 -8 0.23286056518554688 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 2 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 61.49 0 0 5.1478 0 0 64.00235980277041 0 64.00235980277041 0 40.89948061694351 0 0 0 0.9247425010840047 0 2.2856668758921828 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.1478 - 463 + NaN NaN 174765.3 NaN 9377 3008 12383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12388 57.257 NaN 672140 35 0 89831 0.262 + 18785 NADPIAKYL 9 82 502.7742971198311 1003.5340413064622 2 502.7743835449219 MULTI HCD FTMS 0 0 0 12383 250549.265625 0.5131929494906461 -5 0.1410064697265625 5 Unmodified _NADPIAKYL_ ENSG00000172716|ENST00000685675|SLFN11 61.60191391372663 0.015340508911304802 2 {[QG]|[NA]}DP{I|L}AKY{I|L} 9 0 + 69.745 0 0 6.9499 6.9499 91.567 0 0 0 32.07499533998126 61.672684215915595 32.07499533998126 11.841896413063552 0 1.524227503252014 1.5228787452803376 0 1.2440840204505517 + + {[QG]|[NA]}DP{I|L}AKY{I|L};{[QG]|[NA]}V[EP]AKY{I|L};{[QG]|[NA]}DP{I|L}A[Y{I|L}]K;{[QG]|[NA]}V[KA][EP]Y{I|L};{[QG]|[NA]}V[EP]A[Y{I|L}]K;{[QG]|[NA]}V[KA][Y{I|L}][EP] 6.9499;5.7699;4.1866;3.5461;3.0066;1.3249 +;-;-;-;-;- + 104 NaN NaN 189782.7 NaN 9378 3008 12383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12389 57.26 NaN 573300 35 0 80381 0.261 + 16205 LPVQPENAL 9 84 490.77427684631743 979.5340007594349 2 490.7742004394531 MULTI HCD FTMS 0 0 0 12383 175849.984375 0.5718549903579744 -4 0.11481475830078125 6 Unmodified _LPVQPENAL_ ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 51.629811660486645 0.02929079705179888 2 [{I|L}P]VQ[EP]NA{I|L} 9 0 + 59.217 0 0 6.0454 6.0454 88.626 0 0 0 4.762036441594191 44.26863094705837 4.762036441594191 9.208187539523749 0 1.8807196863200843 0 0.3252574989159953 0.3054621874040891 + + [{I|L}P]VQ[EP]NA{I|L};[{I|L}P]V[AG][EP]NA{I|L};[{I|L}P]VQ[EP]GGA{I|L};[{I|L}P]V[DP]AANA{I|L};[{I|L}P]V[DP]QQA{I|L} 6.0454;5.1054;5.1054;3.7322;2.984 +;-;-;-;- + 120 NaN NaN 169348.8 NaN 9379 3008 12383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12391 57.265 NaN 946390 35 0 211410 0.327 + 10550 IPIGIDKAL 9 71 470.29733006412516 938.5801071950503 2 470.2973937988281 MULTI HCD FTMS 0 0 0 12390 666923.5625 0.8512247969653612 1 -0.00958251953125 1 Unmodified _IPIGIDKAL_ ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5 96.36657018975838 0.004359138328518304 2 {I|L}P{I|L}G{I|L}DKA{I|L} 9 0 + 112.74 0 0 12.012 12.012 97.52 0 0 0 68.0842309438912 8.256886463274284 8.256886463274284 20.07007180900061 0 3.079689690656103 1.6989700043360187 1.5114393726401687 0 + + {I|L}P{I|L}G{I|L}DKA{I|L};[{I|L}P]{I|L}G{I|L}DKA{I|L};[{I|L}P]G{I|L}{I|L}DKA{I|L};[{I|L}P]{I|L}G{I|L}[NS]{I|L}{I|L};[{I|L}P]G{I|L}{I|L}[NS]{I|L}{I|L};{[VA]|[{I|L}G]}P{I|L}{I|L}DKA{I|L};[{I|L}P]G[KT]TP{I|L}{I|L};[{I|L}P]G[KT]T{I|L}P{I|L};{[VA]|[{I|L}G]}P{I|L}{I|L}[NS]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}AG{I|L}P{I|L}{I|L} 12.012;9.8738;9.3411;8.1119;7.5792;6.0979;5.7512;5.0623;4.3359;3.7029 +;+;-;-;-;-;-;-;-;- + 528 + NaN NaN 244220.4 NaN 9380 3009 12390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12392 57.269 NaN 714930 35 0 176340 0.261 -1 LTVYTCPVYM 10 71 603.285736759827 NaN 0 603.2997436523438 PEAK HCD FTMS 0 0 0 12390 24177.171875 0.5569299188687333 -3 0.0819549560546875 2 Oxidation (M) _LTVYTCPVYM(Oxidation (M))_ DNHD1|p.S4706T|1|0.19|ENSG00000179532|chr11:6571840-6571840|T/A|missense_variant 10.073929032068715 0.33156240198919784 2 PPQ 3 -1 14.425 0 0 1.1975 0 0 165.05377328404444 714.3256249274307 879.3793982114751 0 0 0 0 0 0.4247425010840047 0 0 0 PPQ 1.1975 - 114 + NaN NaN 212208.5 NaN 9381 3009 12390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12394 57.274 NaN 2128500 35 0 266020 0.327 + 9069 HPEYGEVIQL 10 86 592.801208023902 NaN 0 592.8012084960938 PEAK HCD FTMS 0 0 0 12393 1191949.5 0.8636056574725658 -3 0.061946868896484375 1 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 93.16586880292088 0.000361207248195673 2 CEYWV{I|L} 6 6 41.362 0 0 3.4946 0 0 131.0957549618343 256.1299711401708 387.2257261020051 0 0 0 0 0 2.0994850021680094 0 0.4247425010840047 0 CEYWV{I|L} 3.4946 - 95 + NaN NaN 416559.7 NaN 9382 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12395 57.279 NaN 849520 35 0 69464 0.261 + 13210 KYLVLANML 9 85 540.8096235843683 1079.6046942355365 2 540.8099365234375 MULTI HCD FTMS 0 0 0 12393 332723.34375 0.9166479198526565 -1 0.00958251953125 2 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 99.79894945604345 0.0042691968066200965 2 [YK]{I|L}V{I|L}AN{M(Oxidation (M))|F}{I|L} 9 0 + 79.831 0 0 7.3944 7.3944 91.002 0 0 0 4.137342758552691 48.738350322034236 4.137342758552691 9.208187539523749 0 2.6989700043360187 0 0 0.4247425010840047 + + [YK]{I|L}V{I|L}AN{M(Oxidation (M))|F}{I|L};[YK]{I|L}V{I|L}AGG{M(Oxidation (M))|F}{I|L};[YK]{I|L}V{I|L}A[MD]K;[YK]{I|L}V{I|L}C[QT]{I|L};[YK]{I|L}V{I|L}C[DV]K 7.3944;6.5415;4.5223;4.4525;3.5015 +;-;-;-;- + 808 NaN NaN 215248 NaN 9383 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12396 57.282 NaN 716790 35 0 84860 0.261 + 27564 TADPLDYRL 9 80 532.274602694287 1062.5346524553738 2 532.2748413085938 MULTI HCD FTMS 0 0 0 12393 312437.25 0.2604839262686604 6 -0.14051437377929688 3 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 40.72490554402381 0.06201705472789164 2 [TA]DP{I|L}DYR{I|L} 9 0 + 58.949 0 0 5.5479 5.5479 86.8 0 0 0 2.8648677933320386 2.8648677933320386 2.8648677933320386 8.934874070097521 0 2.305462187404089 0 0.3252574989159953 0 + + [TA]DP{I|L}DYR{I|L};[{I|L}T][HV]D{I|L}PD[PG];[DP][TA]{I|L}DYR{I|L};[DP]{I|L}[TA]DYR{I|L} 5.5479;4.707;1.8781;1.7486 +;-;-;- + 542 NaN NaN 193796.1 NaN 9384 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12397 57.286 NaN 584210 35 0 56667 0.261 + 25302 SAYEFYHAL 9 67 550.7560475629205 1099.4975421926408 2 550.7560424804688 MULTI HCD FTMS 0 0 0 12393 215774.1875 0.062312834275754424 12 -0.3109626770019531 4 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 88.90359156742426 0.00455469703666567 2 [YE]AS{M(Oxidation (M))|F}YHA{I|L} 9 4 + 79.478 0 0 7.2286 7.2286 87.225 0 0 0 2.710667722865381 8.49239948601209 2.710667722865381 2.710667722865381 0 1.9247425010840047 1.3010299956639813 1.0387254899964358 0 [YE]AS{M(Oxidation (M))|F}YHA{I|L};{[SA]|[TG]}YE{M(Oxidation (M))|F}YHA{I|L};[YT]GE{M(Oxidation (M))|F}YHA{I|L};[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[YE]{M(Oxidation (M))|F}{[SA]|[TG]}YHA{I|L};[{M(Oxidation (M))|F}E]Y{[SA]|[TG]}YHA{I|L} 7.2286;6.982;6.6602;6.0453;5.044;3.8607 -;+;-;-;-;- + 547 NaN NaN 172636 NaN 9385 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12398 57.289 NaN 152710 35 0 9386.5 0.261 + 31661 VYKAFVMETF 10 51 625.8098371210849 1249.6051213089697 2 625.8109741210938 MULTI HCD FTMS 0 0 0 12393 57747.61328125 0.24867380265276476 -10 0.265289306640625 5 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 45.739877483867886 0.09559676962230333 2 [YV]QA{M(Oxidation (M))|F}V 6 5 53.645 0 0 4.293 0 0 0 539.1820162408811 539.1820162408811 21.706962271689747 0 0 0 0 1 2 0 0 [YV]QA{M(Oxidation (M))|F}V 4.293 - 93 + NaN NaN 107304.2 NaN 9386 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12399 57.292 NaN 99569 35 0 20603 0.264 + 28910 TWGQYHFETF 10 43 439.1951329990216 NaN 0 439.2044982910156 PEAK HCD FTMS 0 0 0 12393 6523.56201171875 0.7896311937139937 -4 0.0915374755859375 6 Unmodified _TWGQYHFETF_ ENSG00000165899|ENST00000547103|OTOGL 3.5870582119611467 0.3371142643538189 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}W 3 9 11.198 0 0 1.2777 0 0 114.02475826899042 279.11521326236567 393.1399715313561 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}W 1.2777 - 18 + NaN NaN 103154.7 NaN 9387 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12400 57.296 NaN 120740 35 0 5479.7 0.261 + -1 MRLGCVQGL 9 54 496.75589573055834 991.4972385279167 2 496.7557678222656 MULTI HCD FTMS 0 0 0 12393 9774.4833984375 0.20634909541436972 7 -0.17668914794921875 7 Oxidation (M) _M(Oxidation (M))RLGCVQGL_ REV__ENST00000465116.5_2_7:73624301-73624397:+|nuORF 6.723162845929126 0.3000504726104499 2 Q{[VA]|[{I|L}G]} 3 -1 10.942 0 0 1.1036 0 0 675.323045799025 0 675.323045799025 0 6.962724883926656 0 0 0 0.5 0 0 0 Q{[VA]|[{I|L}G]} 1.1036 + + 7 NaN NaN 101033.5 NaN 9388 3010 12393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12402 57.301 NaN 570970 35 0 57904 0.327 + 1375 AYPHNLMTF 9 79 547.2602485510344 1092.5059441688686 2 547.26025390625 MULTI HCD FTMS 0 0 0 12401 255142.078125 0.8608048661529596 2 -0.035739898681640625 1 Unmodified _AYPHNLMTF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 103.74828524460852 0.00396301343438984 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}MT{M(Oxidation (M))|F} 9 2 + 93.698 0 0 8.5764 8.5764 95.099 0 0 0 27.471799572732465 62.7560549062987 27.471799572732465 15.348017428648063 0 1.6747425010840047 2 0.75 0.6139829889124311 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]AMT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}Y{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAN{I|L}{[ES]|[DT]|[{I|L}C]}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}Y{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]AY{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YAGG{I|L}{[ES]|[DT]|[{I|L}C]}Y 8.5764;7.1716;6.6708;5.0226;4.8964;4.7933;4.5119;4.1798;3.679;3.669 -;-;-;-;-;-;-;-;-;- 1159 NaN NaN 183366.2 NaN 9389 3011 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12403 57.305 NaN 262770 35 0 25238 0.261 + 4824 EYVSQHLVF 9 56 561.2847403512213 1120.5549277692426 2 561.2852172851562 MULTI HCD FTMS 0 0 0 12401 103353.7421875 0.4503833335330607 5 -0.11458206176757812 2 Unmodified _EYVSQHLVF_ ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F} 1 8 21.237 0 0 1.8952 0 0 955.4760225952176 0 955.4760225952176 0 2.5404627391502963 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.8952 + + 18 + NaN NaN 138495 NaN 9390 3011 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12404 57.308 NaN 222550 35 0 12642 0.261 + 31662 VYKAFVMETF 10 56 625.8098371210849 1249.6051213089697 2 626.3113403320312 MULTI HCD FTMS 0 0 0 12401 75011.8203125 0.4578949878414655 -8 0.19936752319335938 3 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 69.33821966488729 0.018369488249132326 2 E{M(Oxidation (M))|F}V{M(Oxidation (M))|F}AKP{M(Oxidation (M))|F} 8 7 87.789 0 0 7.0254 0 0 266.1263600080094 0 266.1263600080094 0 74.60175215340689 0 0 0 3.1989700043360187 0 0.6694451763165201 0 E{M(Oxidation (M))|F}V{M(Oxidation (M))|F}AKP{M(Oxidation (M))|F} 7.0254 - 204 NaN NaN 141907.5 NaN 9391 3011 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12405 57.312 NaN 183980 35 0 19755 0.261 + -1 YIVDEEGHEM 10 49 619.2571361253795 NaN 0 619.2769165039062 PEAK HCD FTMS 0 0 0 12401 32652.86328125 1 0 0 4 Oxidation (M) _YIVDEEGHEM(Oxidation (M))_ REV__ENSG00000026751|ENST00000368043|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-3|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7 6.723162845929126 0.3344301934401713 2 CEE 3 -1 13.188 0 0 1.0665 0 0 62.013823855539904 810.3349093072874 872.3487331628273 0 0 0 0 0 0 0 0 0 CEE 1.0665 - 12 + NaN NaN 115954.6 NaN 9392 3011 12401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12407 57.317 NaN 896230 35 0 220800 0.327 -1 HFDMAVYL 8 55 506.23379151314765 1010.4530300930953 2 506.2339172363281 MULTI HCD FTMS 0 0 0 12406 386680.09375 0.8936634265029365 -1 0.016193389892578125 1 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VY{I|L} 3 -1 34.693 0 0 3.4334 0 0 617.2248402326187 0 617.2248402326187 0 30.088643834802156 0 0 0 0.8494850021680094 0 0 0 VY{I|L} 3.4334 + + 17 NaN NaN 219622.5 NaN 9393 3012 12406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12408 57.321 NaN 565850 35 0 53606 0.261 + 1376 AYPHNLMTF 9 81 547.2602485510344 1092.5059441688686 2 547.2605590820312 MULTI HCD FTMS 0 0 0 12406 247466.515625 0.8349088571566536 3 -0.0687408447265625 2 Unmodified _AYPHNLMTF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 85.27202061508552 0.004649858145912257 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[QV]|[N{I|L}]|[RA]|[KV]}MT{M(Oxidation (M))|F} 9 2 + 76.466 0 0 6.9992 6.9992 88.978 0 0 0 25.239824496852137 47.02922980873828 25.239824496852137 8.058685151513444 0 1.7134679910804405 2 0.6747425010840047 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[QV]|[N{I|L}]|[RA]|[KV]}MT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]AMT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]{[ES]|[DT]|[{I|L}C]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA{[QV]|[N{I|L}]|[RA]|[KV]}Y{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YA[VG]AY{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}T][YG]{[QV]|[N{I|L}]|[RA]|[KV]}MT{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[H{I|L}][QP]AY{M(Oxidation (M))|F};[MT][HV][QP]AY{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[H{I|L}][QP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.9992;6.2615;4.6596;4.4984;4.2829;3.843;3.2935;1.5825;1.4407;1.4213 -;-;-;-;-;-;-;-;-;- 618 NaN NaN 175724.4 NaN 9394 3012 12406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12409 57.325 NaN 830450 35 0 79275 0.261 + 19462 NPSVREFVL 9 92 530.7929050215179 1059.5712571098356 2 530.7933959960938 MULTI HCD FTMS 0 0 0 12406 221070.6875 0.0112788082683045 32 -0.8344039916992188 3 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 53.31671820480216 0.026930930319421505 2 [NP]SVRE{M(Oxidation (M))|F}V{I|L} 9 0 + 37.889 0 0 3.5759 3.5759 86.894 0 0 0 8.261518613495518 8.339789456906342 8.261518613495518 12.975694635544745 0 1.524227503252014 0 0.3494850021680094 0.7302046884880937 + + [NP]SVRE{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}V]SD[R{I|L}]PN{I|L};[{M(Oxidation (M))|F}T]{[CP]|[EA]}[R{I|L}]PN{I|L};[{M(Oxidation (M))|F}V]SD[R{I|L}]PGG{I|L};[QT]{I|L}[R{I|L}]D[PA]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA][R{I|L}]PN{I|L} 3.5759;2.3512;1.5254;1.4822;1.269;0.82664 +;-;-;-;-;- + 670 NaN NaN 213035.5 NaN 9395 3012 12406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12410 57.328 NaN 288070 35 0 34019 0.261 + 6283 FPFHSAPAL 9 58 493.75824104696125 985.5019291607225 2 493.75836181640625 MULTI HCD FTMS 0 0 0 12406 166146.15625 0.26975355802560264 11 -0.30178070068359375 4 Unmodified _FPFHSAPAL_ ENSG00000092377|ENST00000383032|TBL1Y;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X 77.98433622928108 0.006504613272346738 2 SAPA{I|L} 5 4 58.831 0 0 5.9696 0 0 528.247850486525 0 528.247850486525 0 40.731661347003424 0 0 0 1.25 0 1.1382104921644451 0 + SAPA{I|L} 5.9696 + + 166 NaN NaN 128016.5 NaN 9396 3012 12406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12411 57.331 NaN 49062 35 0 5241 0.261 -1 0 32 486.3872765558009 NaN 0 486.1809997558594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 V 1 -1 0.48455 0 0 0.049915 0 0 371.41040408640805 497.2716463678344 868.6820504542425 0 0 0 0 0 0 0 0 0 V 0.049915 - 1 + NaN NaN 106328.5 NaN 9397 3012 12406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12413 57.336 NaN 697550 35 0 288880 0.327 -1 SWPRIIMRF 9 55 407.89012929085857 1220.6485584727757 3 407.8902587890625 MULTI HCD FTMS 0 0 0 12412 150057.4375 0.729196821523968 -2 0.035739898681640625 1 Oxidation (M) _SWPRIIM(Oxidation (M))RF_ ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21 8.155526934196011 0.2891920862272901 2 S 1 -1 15.044 0 0 1.2325 0 0 947.5374384883208 183.05637537174064 1130.5938138600616 0 0 0 0 0 0.5 0 0.3054621874040891 0 S 1.2325 + + 24 + NaN NaN 189699.5 NaN 9398 3013 12412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12414 57.341 NaN 305930 35 0 23444 0.261 + 1870 CVSSFFAISW 10 64 573.7656391822765 1145.5167254313528 2 573.7643432617188 MULTI HCD FTMS 0 0 0 12412 100556.234375 0.015434925847492587 47 -1.2695045471191406 2 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 18.1463463914782 0.3413772152514074 2 VSW 3 7 36.198 0 0 3.16 0 0 755.3226185529312 0 755.3226185529312 0 2.9254569558823036 0 0 0 1 0 0 0 VSW 3.16 - 152 NaN NaN 141472.1 NaN 9399 3013 12412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12415 57.344 NaN 60442 35 0 8239.4 0.264 + 12166 KKKKKKVKKI 10 39 419.3155136505931 NaN 0 419.3152770996094 PEAK HCD FTMS 0 0 0 12412 43718.68359375 0.26412093377747503 -68 1.7945480346679688 3 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 2 S 1 -1 6.9897 0 0 0.83547 0 0 275.822664408805 470.7434176080688 746.5660820168738 0 0 0 0 0 0 0 0 0 S 0.83547 - 1 + NaN NaN 108078.8 NaN 9400 3013 12412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12416 57.348 NaN 165990 35 0 17220 0.261 + -1 YIVDEEGHEM 10 48 619.2571361253795 NaN 0 619.2576904296875 PEAK HCD FTMS 0 0 0 12412 27470.87109375 0.8413005272197488 2 -0.0491943359375 4 Oxidation (M) _YIVDEEGHEM(Oxidation (M))_ REV__ENSG00000026751|ENST00000368043|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-3|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7 10.823927491677226 0.33092050725491123 2 EE 2 -1 13.711 0 0 1.1089 0 0 165.04189460047024 810.3396700494749 975.3815646499452 0 0 0 0 0 0 0 0.4247425010840047 0 EE 1.1089 + + 20 + NaN NaN 119687 NaN 9401 3013 12412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12417 57.351 NaN 46281 35 0 4212.1 0.264 -1 0 43 451.19384615909564 450.18656969249565 1 451.1936340332031 MULTI HCD FTMS 0 0 0 12412 37155.62109375 0.3010686344919966 29 -0.7724685668945312 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 2.9097 0 0 285.1074051190566 0 285.1074051190566 0 13.098943791441968 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.9097 - 1 + NaN NaN 106341.5 NaN 9402 3013 12412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12419 57.356 NaN 1166000 35 0 185870 0.327 -1 DPRNATSVCI 10 85 566.7740010513621 1131.5334491695241 2 566.7750244140625 MULTI HCD FTMS 0 0 0 12418 485734.1875 0.01041365939907145 49 -1.3385543823242188 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 2 SP{M(Oxidation (M))|F}STSVSW 9 -1 76.953 0 0 6.8008 0 0 135.09162895643664 0 135.09162895643664 0 60.75556601553153 0 0 0 2.774227503252014 0 1.6549471895720984 0 SP{M(Oxidation (M))|F}STSVSW 6.8008 - 2034 + NaN NaN 279159.3 NaN 9403 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12420 57.36 NaN 820010 35 0 95057 0.261 + 28023 TFTPITMTF 9 89 529.7669223125921 NaN 0 529.7511596679688 PEAK HCD FTMS 0 0 0 12418 8733.6083984375 0.9926190784059207 2 -0.0592041015625 2 Unmodified _TFTPITMTF_ ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4 16.942295170755138 0.2079222001251384 2 GET{M(Oxidation (M))|F}SHAT 8 7 35.074 0 0 3.3167 0 0 62.068764823689044 162.05596338443596 224.124728208125 0 0 0 0 0 0 0 1.5 0 GET{M(Oxidation (M))|F}SHAT 3.3167 - 1255 + NaN NaN 217967.4 NaN 9404 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12421 57.364 NaN 415280 35 0 35808 0.261 -1 0 78 582.769221728906 1163.523890524612 2 582.7699584960938 MULTI HCD FTMS 0 0 0 12418 159296.828125 0.016477877065658873 49 -1.3385543823242188 3 NaN NaN 2 SVSTYVSW 8 -1 65.628 0 0 5.6405 0 0 236.07899752222391 0 236.07899752222391 0 53.97299519289284 0 0 0 2.1237125054200234 0 0.6747425010840047 0 SVSTYVSW 5.6405 - 859 + NaN NaN 152537 NaN 9405 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12422 57.367 NaN 219880 35 0 20100 0.261 + 4630 EYMEHVYLI 9 56 606.7838322096045 1211.553111486009 2 606.7844848632812 MULTI HCD FTMS 0 0 0 12418 97374.8203125 0.13904421694579086 10 -0.2855720520019531 4 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 44.40701690623563 0.04511410083598184 2 VY{I|L}{I|L} 4 5 37.423 0 0 3.0888 0 0 705.2427235334 0 705.2427235334 0 26.453650195120844 0 0 0 1 0 0 0 + VY{I|L}{I|L} 3.0888 + + 24 NaN NaN 116986.3 NaN 9406 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12423 57.371 NaN 167700 35 0 15487 0.262 + 18605 MVTSLEESL 9 61 512.746788989522 1023.479025045844 2 512.7471313476562 MULTI HCD FTMS 0 0 0 12418 66693.078125 0.550097541354712 3 -0.09537887573242188 5 Oxidation (M) _M(Oxidation (M))VTSLEESL_ ENSG00000047410|ENST00000367478|TPR 54.773552608820026 0.024892918755467567 2 VEES{I|L} 5 4 51.682 0 0 5.0497 0 0 448.1961842267594 0 448.1961842267594 0 45.996075289514096 0 0 0 1.4247425010840047 0 0.4247425010840047 0 VEES{I|L} 5.0497 - 81 NaN NaN 121751.4 NaN 9407 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12424 57.374 NaN 326650 35 0 24082 0.261 + 22203 QLPDKWQHDLF 11 77 476.2419198345529 1425.7039301038587 3 476.2421875 MULTI HCD FTMS 0 0 0 12418 76002.875 0.6729080772337552 -1 0.0196380615234375 6 Unmodified _QLPDKWQHDLF_ ENSG00000183684|ENST00000505490|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF 9.243775137331637 0.3765410959215665 2 S{[CP]|[EA]}[Q{I|L}]{M(Oxidation (M))|F} 6 7 16.655 0 0 1.1682 0 0 732.3792176510419 0 732.3792176510419 0 3.160612466810594 0 0 0 0.5 0 0.5 0 S{[CP]|[EA]}[Q{I|L}]{M(Oxidation (M))|F} 1.1682 - 16 NaN NaN 128390.6 NaN 9408 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12425 57.377 NaN 200180 35 0 11671 0.261 + 7897 FYVNVKEQF 9 62 587.300645356404 1172.5867377796078 2 587.30126953125 MULTI HCD FTMS 0 0 0 12418 43482.40625 0.6990618506836258 1 -0.0295562744140625 7 Unmodified _FYVNVKEQF_ ENSG00000151725|ENST00000281453|CENPU;ENST00000506535.1_1_4:185619454-185631498:-|nuORF;nc|ENSG00000151725|Q71F23-2|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU 27.628801355627647 0.12213550946336599 2 [Y{I|L}]HH{[NV]|[RG]}M{I|L}{M(Oxidation (M))|F} 9 6 + 35.569 0 0 3.0333 3.0333 81.615 0 0 0 6.465912507003612 15.902887499330735 6.465912507003612 3.4678748622465676 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}]HH{[NV]|[RG]}M{I|L}{M(Oxidation (M))|F};[Y{I|L}]A{M(Oxidation (M))|F}K{[DS]|[MA]|[CV]|TT}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]A{M(Oxidation (M))|F}K{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{M(Oxidation (M))|F}]V{[NV]|[RG]}{[DS]|[MA]|[CV]|TT}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{M(Oxidation (M))|F}]V{[NV]|[RG]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]HHRR[YE];[Y{M(Oxidation (M))|F}][PS]K{[DS]|[MA]|[CV]|TT}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]A{[RE]|[WV]}[YV]{I|L}{M(Oxidation (M))|F} 3.0333;2.7376;2.4373;2.2514;1.9511;1.738;1.1614;0.985 -;-;-;-;-;-;-;- 106 NaN NaN 110725.6 NaN 9409 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12426 57.381 NaN 111310 35 0 12245 0.262 + 31536 VYGIQVNSL 9 57 496.77415646862386 991.5337600040477 2 496.7348327636719 MULTI HCD FTMS 0 0 0 12418 6075.57861328125 0.043887169614866946 -7 0.14325714111328125 8 Unmodified _VYGIQVNSL_ REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2 6.723162845929126 0.3000504726104499 2 P 1 -1 1.5938 0 0 0.16074 0 0 311.1498621542415 580.3134859674436 891.4633481216852 0 0 0 0 0 0 0 0 0 P 0.16074 - 11 + NaN NaN 117204.5 NaN 9410 3014 12418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12428 57.385 NaN 565160 35 0 88307 0.327 + 22360 QPNGGEPFL 9 69 479.73509721082627 957.4556414884526 2 479.7350769042969 MULTI HCD FTMS 0 0 0 12427 265986.71875 0.34324052982659925 8 -0.23303985595703125 1 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 32.30548876998284 0.10066689432505688 2 P{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.7806 0 0 582.2391793879289 0 582.2391793879289 0 5.563025007672877 0 0 0 1 0 0 0 + P{M(Oxidation (M))|F}{I|L} 3.7806 + + 72 NaN NaN 174576.5 NaN 9411 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12429 57.39 NaN 382240 35 0 50759 0.261 + 8428 GYSEHFVEF 9 61 557.7454155041603 1113.4762780751205 2 557.7460327148438 MULTI HCD FTMS 0 0 0 12427 148667.15625 0.036803665694921064 19 -0.4998435974121094 2 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 50.855029805455786 0.030374663808198754 2 [YG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QD]|[EN]|[WG]|[KD]|[RS]}VE{M(Oxidation (M))|F} 9 3 + 44.269 0 0 3.9758 3.9758 87.498 0 0 0 6.081594725271664 37.2794823081556 6.081594725271664 13.80719686320084 0 1.305462187404089 1.3010299956639813 0.8494850021680094 0 [YG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QD]|[EN]|[WG]|[KD]|[RS]}VE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][NS]{[QD]|[EN]|[WG]|[KD]|[RS]}VE{M(Oxidation (M))|F} 3.9758;2.7358 -;- 54 NaN NaN 144667.9 NaN 9412 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12430 57.394 NaN 247280 35 0 12000 0.261 + 35461 YYEYNHDLF 9 58 632.2696564926487 1262.5247600520972 2 632.2698974609375 MULTI HCD FTMS 0 0 0 12427 107878.578125 0.15324630338849543 14 -0.38918304443359375 3 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 9.38312468134398 0.279288223203164 2 YYHTYWA 7 7 37.083 0 0 2.9372 0 0 0 275.0815860824371 275.0815860824371 11.153886341589754 0 0 0 0 0.3807196863200844 2 0 0 YYHTYWA 2.9372 - 286 NaN NaN 134747.6 NaN 9413 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12431 57.397 NaN 315030 35 0 64994 0.262 + 34693 YPVDLGDKF 9 56 527.2662740009129 1052.5179950686256 2 527.2664794921875 MULTI HCD FTMS 0 0 0 12427 59907.625 0.055506121400016976 14 -0.38918304443359375 4 Unmodified _YPVDLGDKF_ ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant 59.368380827593164 0.01846506874148156 2 YPVD{I|L}[DG]K{M(Oxidation (M))|F} 9 0 + 76.596 0 0 7.2774 7.2774 93.646 0 0 0 50.3976719887757 14.973024840566467 14.973024840566467 19.785925394747387 0 2.3283409326844264 1.6989700043360187 0.25 0 + + YPVD{I|L}[DG]K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VD{I|L}[DG]K{M(Oxidation (M))|F} 7.2774;5.3975 +;+ + 129 + NaN NaN 138993.2 NaN 9414 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12432 57.4 NaN 283600 35 0 116260 0.261 -1 AYPPAPFMHI 10 47 580.2840355997034 1158.5535182662068 2 580.2841186523438 MULTI HCD FTMS 0 0 0 12427 67992.78125 0.7798283998245559 -2 0.0491943359375 5 Oxidation (M) _AYPPAPFM(Oxidation (M))HI_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 7.910154910731844 0.4334339971971892 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P 3 -1 34.265 0 0 2.9575 0 0 0 824.3734473697838 824.3734473697838 18.066884185923655 0 0 0 0 0.3807196863200844 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P 2.9575 + + 19 + NaN NaN 133131 NaN 9415 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12433 57.403 NaN 178760 35 0 10928 0.261 + 7898 FYVNVKEQF 9 61 587.300645356404 1172.5867377796078 2 587.3030395507812 MULTI HCD FTMS 0 0 0 12427 40260.80078125 0.6472684547936073 2 -0.06582260131835938 6 Unmodified _FYVNVKEQF_ ENSG00000151725|ENST00000281453|CENPU;ENST00000506535.1_1_4:185619454-185631498:-|nuORF;nc|ENSG00000151725|Q71F23-2|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU 17.11289562659939 0.2125047172822487 2 [Y{I|L}]HH{[NV]|[RG]}V 7 7 21.527 0 0 1.8359 0 0 0 307.10763881508177 307.10763881508177 11.069553980901928 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]HH{[NV]|[RG]}V 1.8359 - 68 NaN NaN 116094.9 NaN 9416 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12434 57.407 NaN 115630 35 0 4854.3 0.261 + -1 IILVPLILILI 11 27 637.9569091796875 NaN 0 637.74609375 PEAK HCD FTMS 0 0 0 12427 7504.3359375 0.5273441882881531 -1 0.0295562744140625 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IILVPLILILI_ REV__tr|U7SQX9|U7SQX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01622PE=4SV=1 0 0.34212014346876374 2 N 1 -1 2.4743 0 0 0.19423 0 0 487.2336903302749 669.6123140924436 1156.8460044227186 0 0 0 0 0 0 0 0 0 N 0.19423 - 1 + NaN NaN 102084.6 NaN 9417 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12435 57.41 NaN 138250 35 0 13551 0.264 -1 SDMPCADDECF 11 52 416.80190687399164 NaN 0 416.8017272949219 PEAK HCD FTMS 0 0 0 12427 4219.0986328125 0.1320227309688916 4 -0.114715576171875 8 Oxidation (M) _SDM(Oxidation (M))PCADDECF_ ENSG00000225968|ENST00000424383|ELFN1 0.09484139111097674 0.34185110575506755 2 H 1 -1 0.71334 0 0 0.08578 0 0 430.3533732188833 261.15586267642817 691.5092358953115 0 0 0 0 0 0 0 0 0 H 0.08578 - 2 + NaN NaN 106397.9 NaN 9418 3015 12427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12437 57.415 NaN 1696900 35 0 211950 0.327 + 9070 HPEYGEVIQL 10 79 592.801208023902 NaN 0 592.8013305664062 PEAK HCD FTMS 0 0 0 12436 969670.5 0.7025573899601045 3 -0.0850677490234375 1 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 99.75527289724121 0.00019635421346405975 2 Q{I|L}V 3 9 30.445 0 0 2.5723 0 0 131.09608211617757 709.2581454932691 840.3542276094468 0 0 0 0 0 1.4247425010840047 0 0 0 Q{I|L}V 2.5723 - 112 + NaN NaN 339353.5 NaN 9419 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12438 57.42 NaN 759960 35 0 80409 0.262 + 18786 NADPIAKYL 9 92 502.7742971198311 1003.5340413064622 2 502.77447509765625 MULTI HCD FTMS 0 0 0 12436 232969.703125 0.47718523057905665 3 -0.0850677490234375 2 Unmodified _NADPIAKYL_ ENSG00000172716|ENST00000685675|SLFN11 49.52724829834842 0.03223213920720493 2 {[QG]|[NA]}DP{I|L}AKY{I|L} 9 0 + 65.982 0 0 6.5749 6.5749 88.303 0 0 0 28.76721627054799 40.33724282802721 28.76721627054799 8.066884185923662 0 1.620371515030528 1.5228787452803376 0 0.6747425010840047 + + {[QG]|[NA]}DP{I|L}AKY{I|L};{[QG]|[NA]}DP{I|L}AYK{I|L};{[QG]|[NA]}DP{I|L}AY{I|L}K;{[QG]|[NA]}V[EP]AKY{I|L};{[QG]|[NA]}V[EP]AYK{I|L};{[QG]|[NA]}DP[PA]{[HG]|PP}{I|L}{I|L};{[QG]|[NA]}V[EP]AY{I|L}K;[YV]KVVGN[EP];[YV]KVVGGG[EP] 6.5749;5.7711;4.8712;4.8413;4.0374;3.7928;3.1375;2.1539;1.2363 +;-;-;-;-;-;-;-;- + 294 NaN NaN 219180.3 NaN 9420 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12439 57.423 NaN 629430 35 0 145140 0.261 -1 WSVDPLDRAM 10 63 603.285736759827 NaN 0 603.2996215820312 PEAK HCD FTMS 0 0 0 12436 32811.49609375 0.7558247073699123 4 -0.10463333129882812 3 Oxidation (M) _WSVDPLDRAM(Oxidation (M))_ ENSG00000148180|ENST00000432226|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396|GSN 28.494509381512117 0.21182574702812446 2 PPQ 3 -1 19.169 0 0 1.5914 0 0 165.05339757717553 714.3239447695582 879.3773423467337 0 0 0 0 0 0.4247425010840047 0 0 0.3494850021680094 PPQ 1.5914 - 50 + NaN NaN 203146.3 NaN 9421 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12440 57.426 NaN 616400 35 0 114140 0.261 + 5732 FPAGYMYPSM 10 71 598.2435232613002 1194.4724935894003 2 598.2435302734375 MULTI HCD FTMS 0 0 0 12436 324885.28125 1 0 0 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 2 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 69.174 0 0 5.7912 0 0 63.9963546182774 0 63.9963546182774 0 49.553046282426365 0 0 0 1.4247425010840047 0 2.190614065464281 0 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.7912 - 483 + NaN NaN 187294.4 NaN 9422 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12441 57.43 NaN 578090 35 0 64962 0.262 + 10566 IPISLHTSL 9 93 490.79220945244685 979.5698659716937 2 490.7924499511719 MULTI HCD FTMS 0 0 0 12436 185540.078125 0.8741491916308283 1 -0.036174774169921875 5 Unmodified _IPISLHTSL_ nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B 78.14939416004806 0.006451203201226903 2 {I|L}P{I|L}H[{I|L}T]SS{I|L} 9 3 + 69.79 0 0 7.1246 7.1246 86.687 0 0 0 30.751802017189505 4.951134127217713 4.951134127217713 1.7731749024395782 0 1.4604093769761874 1.6989700043360187 1.0114393726401687 0 {I|L}P{I|L}H[{I|L}T]SS{I|L};{I|L}P{I|L}S[H{I|L}]TS{I|L};{I|L}P{I|L}H{[TV]|[{I|L}S]}TS{I|L};[{I|L}P]{I|L}N{[QD]|[EN]|[WG]|[KD]|[RS]}AP{I|L};[{I|L}P]VQ{[QD]|[EN]|[WG]|[KD]|[RS]}AP{I|L};[{I|L}P]N[SG]V{I|L}AP{I|L};[{I|L}P]{I|L}N[NS]{I|L}P{I|L};[{I|L}P]N{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AP{I|L};[{I|L}P]{I|L}GG{[QD]|[EN]|[WG]|[KD]|[RS]}AP{I|L};[{I|L}P]VQ[NS]{I|L}P{I|L} 7.1246;6.9436;6.6363;5.6381;5.3074;4.9526;4.9057;4.8204;4.6981;4.5751 -;+;-;-;-;-;-;-;-;- + 1009 + NaN NaN 180539.6 NaN 9423 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12442 57.433 NaN 139200 35 0 29426 0.261 + 10551 IPIGIDKAL 9 50 470.29733006412516 938.5801071950503 2 470.2972412109375 MULTI HCD FTMS 0 0 0 12436 81924.578125 0.10456405546614048 8 -0.22636795043945312 6 Unmodified _IPIGIDKAL_ ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5 37.07464296494664 0.07877380486334713 2 {I|L}P{I|L}G{I|L}D 6 3 67.3 0 0 7.1704 0 0 0 327.2037752740844 327.2037752740844 58.71600731282193 0 0 0 0 1.274227503252014 1.6989700043360187 0.4247425010840047 0 + {I|L}P{I|L}G{I|L}D 7.1704 + + 42 + NaN NaN 114630.1 NaN 9424 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12443 57.436 NaN 272080 35 0 39740 0.261 + -1 MCSSPPLSVI 10 56 525.253884108496 1048.4932152837919 2 525.254638671875 MULTI HCD FTMS 0 0 0 12436 80007.9921875 0.3329195768754796 -7 0.15009689331054688 7 Oxidation (M) _M(Oxidation (M))CSSPPLSVI_ REV__AKAP11|p.L1320V|1|0.1|ENSG00000023516|chr13:42302704-42302704|C/G|missense_variant 13.90604991867851 0.3810395177745597 2 SV{I|L} 3 -1 39.253 0 0 3.7437 0 0 731.2942982404312 0 731.2942982404312 0 33.767959391884546 0 0 0 0.5 0 0.805462187404089 0 SV{I|L} 3.7437 + + 13 NaN NaN 126287.3 NaN 9425 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12444 57.44 NaN 126790 35 0 11984 0.261 + 21620 PYPFTHHWQF 10 50 453.88042653904404 1358.619450217332 3 453.8802795410156 MULTI HCD FTMS 0 0 0 12436 46807.42578125 0.12109159373165845 14 -0.37899017333984375 8 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 15.738622578938676 0.3638982514236938 2 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.6185 0 0 1193.5406976311976 0 1193.5406976311976 0 17.385606273598313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6185 + + 6 + NaN NaN 106216.1 NaN 9426 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12445 57.443 NaN 155960 35 0 11654 0.261 -1 NYDFGPIHM 9 54 555.2394959525935 1108.464438971987 2 555.240234375 MULTI HCD FTMS 0 0 0 12436 36232.2265625 0.387567957945631 11 -0.3139686584472656 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ ENSG00000011275|ENST00000389902|RNF216;MTHFD1L-RNF216|1|fusion;MTHFD1L-RNF216|2|fusion;MTHFD1L-RNF216|3|fusion;nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216 29.081581746732265 0.1154664336125038 2 [YN]D 3 -1 37.447 0 0 3.3783 0 0 0 713.3099034097401 713.3099034097401 10.981362441963327 0 0 0 0 1 2 0 0 [YN]D 3.3783 + + 30 NaN NaN 134339.7 NaN 9427 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12446 57.446 NaN 104600 35 0 9063.6 0.261 + -1 LVMFLHLLLK 10 46 621.8854370117188 NaN 0 621.8854370117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _LVM(Oxidation (M))FLHLLLK_ REV__DPY19L3|p.G455Afs*5|1|0.45|ENSG00000178904|chr19:32463401-32463401|A/-|frameshift_variant;REV__ENSG00000178904|ENST00000392250|DPY19L3;REV__nc|ENSG00000178904|Q6ZPD9-2|DPY19L3 0.45834013312273997 0.33979201340002624 2 Q 1 -1 5.4846 0 0 0.44277 0 0 564.8684170880875 542.7553194635374 1107.623736551625 0 0 0 0 0 0 0 0 0 Q 0.44277 - 1 + NaN NaN 102912.4 NaN 9428 3016 12436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12448 57.451 NaN 395790 35 0 32308 0.327 + 25303 SAYEFYHAL 9 61 550.7560475629205 1099.4975421926408 2 550.756103515625 MULTI HCD FTMS 0 0 0 12447 137492.1875 0.03970599075433179 19 -0.4930763244628906 1 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 46.020951573049366 0.037705236580089195 2 [{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L} 9 4 + 41.224 0 0 3.7494 3.7494 60.683 0 0 0 0 0.193409159737854 0 0 0 1.3935078169319297 0 0.75 0 [{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}YHA{I|L};[YE]AS{M(Oxidation (M))|F}YHA{I|L} 3.7494;3.7494 -;- 138 NaN NaN 147590.9 NaN 9429 3017 12447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12449 57.456 NaN 111980 35 0 15109 0.263 + 33470 YHPAGDAF 8 45 439.1951329990216 NaN 0 439.2048645019531 PEAK HCD FTMS 0 0 0 12447 5882.2900390625 0.7120097420662197 3 -0.06845855712890625 2 Unmodified _YHPAGDAF_ REV__ENSG00000130702|ENST00000252999|LAMA5;REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.52536 0 0 261.09292180537426 465.1920260065063 726.2849478118806 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.52536 + + 3 + NaN NaN 110288 NaN 9430 3017 12447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12451 57.461 NaN 886140 35 0 232680 0.327 -1 HFDMAVYL 8 59 506.23379151314765 1010.4530300930953 2 506.23388671875 MULTI HCD FTMS 0 0 0 12450 401928.3125 0.9289038633302882 5 -0.15751266479492188 1 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VY{I|L} 3 -1 35.005 0 0 3.4643 0 0 617.2268647087466 0 617.2268647087466 0 31.025684359364405 0 0 0 0.8807196863200843 0 0 0 VY{I|L} 3.4643 + + 13 NaN NaN 230664.4 NaN 9431 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12452 57.465 NaN 704840 35 0 299450 0.262 + -1 WSIFKCRPK 9 54 407.89012929085857 1220.6485584727757 3 407.8901672363281 MULTI HCD FTMS 0 0 0 12450 120170.8359375 0.5839643343603227 3 -0.0983123779296875 2 Carbamidomethyl (C) _WSIFKC(Carbamidomethyl (C))RPK_ REV__ENST00000261254.7_1_12:4412013-4412226:+|nuORF 4.897010918128616 0.31389406404703984 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}C 3 -1 30.502 0 0 2.4988 0 0 0 841.5126081156069 841.5126081156069 20.017346757967545 0 0 0 0 0.5 1.6989700043360187 0.3054621874040891 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}C 2.4988 - 12 NaN NaN 182591 NaN 9432 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12453 57.469 NaN 372530 35 0 30477 0.261 + 31663 VYKAFVMETF 10 59 625.8098371210849 1249.6051213089697 2 625.8096923828125 MULTI HCD FTMS 0 0 0 12450 221268.953125 0.9528323138586874 -2 0.045879364013671875 3 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 107.09958533191995 5.475541806694616E-05 2 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 109.91 0 0 8.7959 8.7959 96.595 0 0 0 2.755762612236907 2.755762612236907 2.755762612236907 26.80523450795789 0 3.274227503252014 1.5228787452803376 0.3807196863200844 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}D[YV];[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[YV]K{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K[YV];[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}[YV];[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[YV]K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K[YV];[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F}[YV] 8.7959;6.6508;2.997;2.8195;2.2106;2.033;1.3536;1.1761;0.56716;0.38963 +;-;-;-;-;-;-;-;-;- + 362 NaN NaN 139278.5 NaN 9433 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12454 57.472 NaN 360610 35 0 32545 0.261 -1 0 69 582.769221728906 1163.523890524612 2 582.7698974609375 MULTI HCD FTMS 0 0 0 12450 152090.03125 0.015732396353072182 53 -1.4524116516113281 4 NaN NaN 2 SVSW 4 -1 33.629 0 0 2.8903 0 0 686.30082900215 0 686.30082900215 0 5.12890247473068 0 0 0 0.8807196863200843 0 0.6139829889124311 0 SVSW 2.8903 - 199 NaN NaN 146149.2 NaN 9434 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12455 57.475 NaN 350430 35 0 25153 0.261 + 20132 NYIRTINPC 9 79 547.2749377473111 1092.5353225614222 2 547.2607421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _NYIRTINPC_ REV__CPXM2|p.M334I|1|0.14|ENSG00000121898|chr10:123771016-123771016|C/T|missense_variant;REV__ENSG00000121898|ENST00000241305|CPXM2;REV__ENST00000368854.7_1_10:125528237-125699754:-|nuORF 11.640296217721598 0.25978676193971967 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y 3 -1 29.181 0 0 2.671 0 0 0 692.3470955929253 692.3470955929253 1.7339374311232802 0 0 0 0 0 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y 2.671 - 146 NaN NaN 140959.7 NaN 9435 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12456 57.479 NaN 340930 35 0 25726 0.261 + 1871 CVSSFFAISW 10 72 573.7656391822765 1145.5167254313528 2 573.7643432617188 MULTI HCD FTMS 0 0 0 12450 63853.5703125 0.009801233399369641 52 -1.4263420104980469 6 Unmodified _CVSSFFAISW_ ENSG00000134258|ENST00000369458|VTCN1;nc|ENSG00000134258|Q7Z7D3-2|VTCN1;nc|ENSG00000134258|Q7Z7D3-4|VTCN1 20.453626601364224 0.3197956946484955 2 SW 2 8 34.222 0 0 2.9874 0 0 854.3948356938582 0 854.3948356938582 0 18.02378753635658 0 0 0 1 0 0.3252574989159953 0 + SW 2.9874 + + 101 + NaN NaN 144618.7 NaN 9436 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12457 57.482 NaN 198780 35 0 10880 0.261 -1 KYLVLANML 9 52 540.8096235843683 1079.6046942355365 2 540.8095092773438 MULTI HCD FTMS 0 0 0 12450 49108.08203125 0.13529204393822739 7 -0.21236419677734375 7 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 39.94969957227396 0.06557568441294001 2 V{I|L}AN{M(Oxidation (M))|F}{I|L} 6 -1 55.539 0 0 5.1444 0 0 404.24019057441564 0 404.24019057441564 0 48.54934083125073 0 0 0 2.1549471895720984 0 0 0 V{I|L}AN{M(Oxidation (M))|F}{I|L} 5.1444 + + 107 NaN NaN 115965.3 NaN 9437 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12458 57.485 NaN 147180 35 0 20266 0.261 -1 HVRFMKQPSSG 11 38 645.3270191361526 1288.639485339105 2 645.3267211914062 MULTI HCD FTMS 0 0 0 12450 60678.16015625 0.9092922713596866 1 -0.039188385009765625 8 Oxidation (M) _HVRFM(Oxidation (M))KQPSSG_ ENST00000322315.5_1_19:3590178-3593283:+|nuORF 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122889.8 NaN 9438 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12459 57.489 NaN 466040 35 0 101490 0.264 + 33274 YFLEMQEKLER 11 63 495.9173322181689 1484.7301672547067 3 496.251708984375 MULTI HCD FTMS 0 0 0 12450 20879.806640625 0.34824460688788356 1 -0.039188385009765625 9 Unmodified _YFLEMQEKLER_ ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF;nc|ENSG00000099308|O60307|MAST3 8.751783647060863 0.3805383164556717 2 Y{M(Oxidation (M))|F}{I|L}[NS]V{[QG]|[NA]}NS{I|L}P{M(Oxidation (M))|F} 13 8 + 73.27 0 0 4.9349 4.9349 85.296 0 0 0 48.91119810825148 15.136929002448156 15.136929002448156 7.5 0 1.2302046884880937 0 0.75 0.805462187404089 Y{M(Oxidation (M))|F}{I|L}[NS]V{[QG]|[NA]}NS{I|L}P{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}{I|L}D[KG]{[QG]|[NA]}NS{I|L}P{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}{I|L}{[TV]|[{I|L}S]}{[RE]|[WV]}NS{I|L}P{M(Oxidation (M))|F};Y{M(Oxidation (M))|F}{I|L}{[CP]|[EA]}{[RE]|[WV]}NS{I|L}P{M(Oxidation (M))|F} 4.9349;4.4297;3.6907;3.6907 -;-;-;- 489 + NaN NaN 154570.5 NaN 9439 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12460 57.492 NaN 198100 35 0 7149.5 0.261 + 35462 YYEYNHDLF 9 51 632.2696564926487 1262.5247600520972 2 632.2695922851562 MULTI HCD FTMS 0 0 0 12450 41764.98828125 0.05932901764564664 17 -0.460540771484375 10 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 13.90604991867851 0.24021115267848145 2 YYE[WR]Y 6 6 34.287 0 0 2.7157 0 0 0 299.0820406549438 299.0820406549438 3.8686173419276884 0 0 0 0 0.6382104921644451 2 0.3494850021680094 0 YYE[WR]Y 2.7157 - 69 + NaN NaN 115275.4 NaN 9440 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12461 57.495 NaN 165710 35 0 8820.5 0.261 + -1 YIVDEEGHEM 10 49 619.2571361253795 NaN 0 619.2763671875 PEAK HCD FTMS 0 0 0 12450 20987.0234375 0.6427314890192559 7 -0.21236419677734375 11 Oxidation (M) _YIVDEEGHEM(Oxidation (M))_ REV__ENSG00000026751|ENST00000368043|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-3|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-5|SLAMF7;REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7 6.723162845929126 0.3344301934401713 2 CEQ 3 -1 8.6721 0 0 0.70135 0 0 62.00575937616515 811.3433321588499 873.3490915350151 0 0 0 0 0 0 0 0 0 CEQ 0.70135 - 54 + NaN NaN 110242.4 NaN 9441 3018 12450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12463 57.5 NaN 213850 35 0 16921 0.327 + 27565 TADPLDYRL 9 59 532.274602694287 1062.5346524553738 2 532.2752075195312 MULTI HCD FTMS 0 0 0 12462 44667.94921875 0.03724038279964742 15 -0.3851280212402344 1 Unmodified _TADPLDYRL_ ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948|NUP98 17.11289562659939 0.2125047172822487 2 [TA]DM[W{I|L}]{I|L}[{I|L}T] 9 4 [TA] + + 27.72 5.2288 3.0385 2.6088 2.6088 59.949 0 0 0 0 13.740531936587459 0 0 0 1 0 0.3494850021680094 0 [TA]DM[W{I|L}]{I|L}[{I|L}T] 2.6088 - 98 + NaN NaN 137017.4 NaN 9442 3019 12462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12464 57.505 NaN 182970 35 0 10580 0.261 + -1 FFECDKQF 8 51 560.7402574784468 NaN 0 560.7398071289062 PEAK HCD FTMS 0 0 0 12462 25806.724609375 0.5079005903436238 5 -0.14130020141601562 2 Carbamidomethyl (C) _FFEC(Carbamidomethyl (C))DKQF_ REV__ENSG00000115239|ENST00000263634|ASB3;REV__nc|ENSG00000115239|Q9Y575-2|ASB3;REV__nc|ENSG00000115239|Q9Y575-3|ASB3 5.230669730166228 0.38822285293237185 2 E 1 -1 11.99 0 0 1.071 0 0 165.08104605555565 822.3270357721311 987.4080818276868 0 0 0 0 0 0.5 0 0 0 E 1.071 + + 5 + NaN NaN 117028.5 NaN 9443 3019 12462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12465 57.508 NaN 213280 35 0 7768.4 0.261 + 35463 YYEYNHDLF 9 61 632.2696564926487 1262.5247600520972 2 632.2698974609375 MULTI HCD FTMS 0 0 0 12462 51463.546875 0.07310625014649363 18 -0.4737052917480469 3 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 9.38312468134398 0.279288223203164 2 [YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F} 10 7 + 40.111 0 0 3.1771 3.1771 81.916 0 0 0 1.2941615793476302 12.43501263708417 1.2941615793476302 3.979400086720375 0 0.4247425010840047 1.5228787452803376 0 0 [YN]A{[ES]|[DT]|[{I|L}C]}YW[PS]{M(Oxidation (M))|F};YYHTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};[YN]WTY{[DA]|[EG]}[PS]{M(Oxidation (M))|F};YYE{[QD]|[EN]|[WG]|[KD]|[RS]}VY{[{M(Oxidation (M))|F}H]|[RQ]};YYWW{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YYWWV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]WYV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[HG]|PP}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[QD]|[EN]|[WG]|[KD]|[RS]}TW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.1771;2.8619;2.7991;2.7203;2.0485;2.0485;1.6919;0.58463 -;-;-;-;-;-;-;- 275 NaN NaN 115840 NaN 9444 3019 12462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12466 57.511 NaN 312650 35 0 54293 0.261 + 23906 RSVEPGQTSSM 11 69 589.7776660241032 1177.5407791150062 2 589.7611694335938 MULTI HCD FTMS 0 0 0 12462 38903.9609375 0.1729579840887353 -4 0.114715576171875 4 Unmodified _RSVEPGQTSSM_ REV__ENST00000596243.5_1_19:50382564-50382609:+|nuORF 5.731851221503515 0.39378271418728467 2 S{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 14.437 0 0 1.226 0 0 854.4295253081688 0 854.4295253081688 0 2.754537344402907 0 0 0 0 0 0.8494850021680094 0 S{[MS]|[{M(Oxidation (M))|F}A]} 1.226 + + 44 + NaN NaN 136756.7 NaN 9445 3019 12462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12467 57.515 NaN 155710 35 0 6148.9 0.261 + -1 LAWCHALR 8 55 513.7679666753111 NaN 0 513.7681274414062 PEAK HCD FTMS 0 0 0 12462 8773.7900390625 0.2783868502078646 11 -0.29392242431640625 5 Carbamidomethyl (C) _LAWC(Carbamidomethyl (C))HALR_ REV__ENST00000444521.6_1_1:2521013-2521196:+|nuORF 5.230669730166228 0.38822285293237185 2 {I|L}S 2 -1 4.6927 0 0 0.4576 0 0 538.2112781916734 284.17319666080317 822.3844748524766 0 0 0 0 0 0 0 0 0 {I|L}S 0.4576 - 6 + NaN NaN 114525.4 NaN 9446 3019 12462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12469 57.52 NaN 985070 35 0 126610 0.327 + 28018 TFTFSHATF 9 84 529.7509373970008 1057.4873218608016 2 529.7509155273438 MULTI HCD FTMS 0 0 0 12468 525042.0625 0.8835447710960967 3 -0.09875869750976562 1 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 141.82661023413823 1.746659319327287E-05 2 WT{M(Oxidation (M))|F}SHAT{M(Oxidation (M))|F} 8 2 79.793 0 0 7.5455 0 0 62.03595936487586 0 62.03595936487586 0 46.69715049547498 0 0 0 2.1989700043360187 0 1.9489700043360187 0 WT{M(Oxidation (M))|F}SHAT{M(Oxidation (M))|F} 7.5455 - 2769 + NaN NaN 234040.5 NaN 9447 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12470 57.524 NaN 957120 35 0 163630 0.261 -1 DPRNATSVCI 10 79 566.7740010513621 1131.5334491695241 2 566.7750854492188 MULTI HCD FTMS 0 0 0 12468 399769.625 0.008570664408595944 55 -1.4911842346191406 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 26.268140514670165 0.2654086933305545 2 SP{M(Oxidation (M))|F}STSVSW 9 -1 76.923 0 0 6.7981 0 0 135.0898589369054 0 135.0898589369054 0 60.01139416000356 0 0 0 2.774227503252014 0 1.1747425010840047 0 SP{M(Oxidation (M))|F}STSVSW 6.7981 - 1414 + NaN NaN 233823.8 NaN 9448 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12471 57.528 NaN 383270 35 0 26641 0.261 -1 0 71 582.769221728906 1163.523890524612 2 582.7696533203125 MULTI HCD FTMS 0 0 0 12468 148327.25 0.015343169225374367 55 -1.4911842346191406 3 NaN NaN 2 SVS[YT]VSW 8 -1 55.699 0 0 4.7871 0 0 236.0781934878226 0 236.0781934878226 0 45.24140688064094 0 0 0 2.309894379144197 0 0.3494850021680094 0 SVS[YT]VSW 4.7871 - 381 + NaN NaN 166919.5 NaN 9449 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12472 57.531 NaN 332130 35 0 22818 0.261 + 7572 FYGDKMNLF 9 76 575.765067988859 1149.5155830445178 2 575.765380859375 MULTI HCD FTMS 0 0 0 12468 142418.453125 1 0 0 4 Oxidation (M) _FYGDKM(Oxidation (M))NLF_ ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6 41.8396318013385 0.056899836730939755 2 N{I|L}{M(Oxidation (M))|F} 3 6 25.222 0 0 2.1941 0 0 757.3089466779312 0 757.3089466779312 0 16.026909627198407 0 0 0 0.4247425010840047 0 0 0.3807196863200844 + N{I|L}{M(Oxidation (M))|F} 2.1941 + + 119 NaN NaN 145896.6 NaN 9450 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12473 57.534 NaN 364060 35 0 23068 0.261 + -1 RGIFMTIVI 9 68 533.3102021167832 1064.6058513003663 2 533.3101196289062 MULTI HCD FTMS 0 0 0 12468 83686.9609375 0.7687528791638567 3 -0.09875869750976562 5 Oxidation (M) _RGIFM(Oxidation (M))TIVI_ REV__tr|U7SLQ6|U7SLQ6_FUSNUTrksystempotassiumuptakeproteinTrkHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02135PE=4SV=1 20.453626601364224 0.18364154288633264 2 V{I|L} 2 -1 18.711 0 0 1.7576 0 0 834.4422474591812 0 834.4422474591812 0 0.1278813061184536 0 0 0 0.4247425010840047 0 0 0 V{I|L} 1.7576 + + 129 NaN NaN 145682.5 NaN 9451 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12474 57.538 NaN 245570 35 0 39368 0.261 + 22361 QPNGGEPFL 9 57 479.73509721082627 957.4556414884526 2 479.7348327636719 MULTI HCD FTMS 0 0 0 12468 50223.86328125 0.06481100080338102 13 -0.3427276611328125 6 Unmodified _QPNGGEPFL_ ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant 13.90604991867851 0.24021115267848145 2 [{I|L}V]A{I|L}{I|L}{I|L} 6 8 37.88 0 0 3.9564 0 0 0 331.99278683440883 331.99278683440883 9.69273760456403 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}V]A{I|L}{I|L}{I|L} 3.9564 - 41 NaN NaN 127018 NaN 9452 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12475 57.541 NaN 300340 35 0 37828 0.261 + 8429 GYSEHFVEF 9 62 557.7454155041603 1113.4762780751205 2 557.7460327148438 MULTI HCD FTMS 0 0 0 12468 115761.0390625 0.028657510438879794 24 -0.6313819885253906 7 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 34.10243960390752 0.09241788333544565 2 E{M(Oxidation (M))|F} 2 7 34.464 0 0 3.0952 0 0 819.3548924323455 0 819.3548924323455 0 23.494850021680094 0 0 0 1 0 0.5 0 + E{M(Oxidation (M))|F} 3.0952 + + 64 + NaN NaN 126036.2 NaN 9453 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12476 57.544 NaN 271650 35 0 13433 0.261 -1 0 61 561.1026238761912 2800.476737047956 5 561.3142700195312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 {I|L}Q[{M(Oxidation (M))|F}T]QQ{I|L}{I|L} 8 -1 27.906 0 0 0.99648 0 0 1810.9595569264 0 1810.9595569264 0 12.421525057367404 0 0 0 0 0 0 0.25 {I|L}Q[{M(Oxidation (M))|F}T]QQ{I|L}{I|L} 0.99648 - 143 + NaN NaN 121988.8 NaN 9454 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12477 57.548 NaN 165600 35 0 13792 0.261 + -1 SSDGKGCLYII 11 45 606.7992552294572 NaN 0 606.7844848632812 PEAK HCD FTMS 0 0 0 12468 9289.23828125 0.6254715030199536 -1 0.019565582275390625 9 Carbamidomethyl (C) _SSDGKGC(Carbamidomethyl (C))LYII_ REV__ENSG00000110880|ENST00000261401|CORO1C;REV__ENST00000547361.1_1_12:109046046-109052582:-|nuORF;REV__nc|ENSG00000110880|Q9ULV4-2|CORO1C;REV__nc|ENSG00000110880|Q9ULV4-3|CORO1C 2.498486711656943 0.3350326561941647 2 {I|L} 1 -1 5.4846 0 0 0.45268 0 0 149.1394768085625 946.3352164223086 1095.474693230871 0 0 0 0 0 0 0 0 0 {I|L} 0.45268 + + 9 + NaN NaN 112912.6 NaN 9455 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12478 57.551 NaN 126390 35 0 7206.7 0.262 + 8795 HIKVVTEVT 9 60 513.3015810133088 NaN 0 513.285400390625 PEAK HCD FTMS 0 0 0 12468 5410.44775390625 1 0 0 10 Unmodified _HIKVVTEVT_ REV__ENSG00000101452|ENST00000252011|DHX35;REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35 7.289230182591677 0.2599242500475609 2 {I|L} 1 -1 6.9897 0 0 0.6822 0 0 537.2758343827714 371.2042635553344 908.4800979381059 0 0 0 0 0 0 0 0 0 {I|L} 0.6822 + + 17 + NaN NaN 104976.1 NaN 9456 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12479 57.554 NaN 171750 35 0 14915 0.261 + 32935 YAIDEYYRM 9 51 612.2741354833819 1222.5337180335637 2 612.7177124023438 MULTI HCD FTMS 0 0 0 12468 22862.560546875 1 0 0 11 Unmodified _YAIDEYYRM_ chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1 20.41453444215458 0.18397929046831515 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DEYY{[WT]|[RM]} 9 0 + 44.274 0 0 3.6215 3.6215 87.956 0 0 0 40.97295930833133 1.8387027560589786 1.8387027560589786 18.965912507003605 0 1.0682503180159344 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DEYY{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}DE[R{M(Oxidation (M))|F}][Y{M(Oxidation (M))|F}] 3.6215;2.0701 +;- + 36 + NaN NaN 108658.7 NaN 9457 3020 12468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12481 57.559 NaN 314150 35 0 23902 0.327 + 28040 TGDFHQAEVW 10 66 595.2677006092187 1188.5208482852372 2 595.2677612304688 MULTI HCD FTMS 0 0 0 12480 97734.7734375 0.8387096795820279 -2 0.059123992919921875 1 Unmodified _TGDFHQAEVW_ ENST00000464356.6_2_1:156452388-156453148:-|nuORF 18.1463463914782 0.3413772152514074 2 W 1 9 19.732 0 0 1.6602 0 0 984.4314145467591 0 984.4314145467591 0 0.6909063137913307 0 0 0 0.4247425010840047 0 0 0 + W 1.6602 + + 150 + NaN NaN 140218.5 NaN 9458 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12482 57.564 NaN 390960 35 0 39667 0.262 + 31637 VYISNGQVL 9 70 496.77415646862386 991.5337600040477 2 496.7744140625 MULTI HCD FTMS 0 0 0 12480 138436.328125 1 0 0 2 Unmodified _VYISNGQVL_ ENSG00000113811|ENST00000495461|SELENOK;ENST00000487571.1_1_3:53922418-53925815:-|nuORF 75.76082778847304 0.0072241045649327805 2 [YV]{I|L}SN{[QG]|[NA]}V{I|L} 9 0 + 70.41 0 0 7.1011 7.1011 90.444 0 0 0 7.470639126791468 7.470639126791468 7.470639126791468 9.208187539523749 0 2.2059771852360797 1.3010299956639813 0 0.4247425010840047 + + [YV]{I|L}SN{[QG]|[NA]}V{I|L};[YV]{I|L}SGG{[QG]|[NA]}V{I|L};[YV]{I|L}S[QA][QA]{I|L} 7.1011;6.1724;5.1555 +;-;- + 289 NaN NaN 152092.1 NaN 9459 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12483 57.567 NaN 277250 35 0 15477 0.261 -1 MSGLRYNEW 9 73 586.2634435869395 1170.512334240679 2 586.2620239257812 MULTI HCD FTMS 0 0 0 12480 82862.6796875 0.6437876634298699 -2 0.059123992919921875 3 Oxidation (M) _M(Oxidation (M))SGLRYNEW_ ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5 13.042465956692817 0.2476723265019929 2 {M(Oxidation (M))|F}SEW 4 -1 35.79 0 0 3.0576 0 0 603.277147361525 0 603.277147361525 0 14.987737688117235 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}SEW 3.0576 - 141 NaN NaN 130745 NaN 9460 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12484 57.571 NaN 449010 35 0 76927 0.261 + 15269 LPAAGVGDMVM 11 71 538.7593792665417 1075.5042055998833 2 538.7594604492188 MULTI HCD FTMS 0 0 0 12480 149013.15625 0.6256587993869925 -2 0.059123992919921875 4 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 71.92227651296345 0.013463123628000074 2 AGVGD{M(Oxidation (M))|F}VM 8 3 52.125 0 0 4.8466 0 0 281.17366225410314 0 281.17366225410314 0 23.197056025908353 0 0 0 2.1866654986684733 0 0.3494850021680094 0 + AGVGD{M(Oxidation (M))|F}VM 4.8466 + + 401 NaN NaN 159926.7 NaN 9461 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12485 57.574 NaN 517520 35 0 184280 0.261 + 25530 SFLDGTPHSAF 11 72 589.7776660241032 1177.5407791150062 2 589.7777099609375 MULTI HCD FTMS 0 0 0 12480 143908.171875 0.6397823435351899 -2 0.059123992919921875 5 Unmodified _SFLDGTPHSAF_ REV__ENSG00000134490|ENST00000383233|TMEM241;REV__ENST00000581444.5_1_18:20889645-20956810:-|nuORF 4.897010918128616 0.3974440401582579 2 TSSM 4 -1 20.522 0 0 1.7428 0 0 753.3424549787125 0 753.3424549787125 0 0.34440644703906287 0 0 0 0 0 0 0 TSSM 1.7428 - 187 NaN NaN 168787.8 NaN 9462 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12486 57.577 NaN 172270 35 0 25552 0.262 + 10840 IVALILSTK 9 59 479.3208630145994 956.6271730959988 2 479.3207702636719 MULTI HCD FTMS 0 0 0 12480 51267.4609375 0.6310655663451957 2 -0.059200286865234375 6 Unmodified _IVALILSTK_ ENSG00000185883|ENST00000330398|ATP6V0C 39.94969957227396 0.06557568441294001 2 [{I|L}V]A{I|L}{I|L}{I|L} 6 3 58.307 0 0 6.0951 0 0 0 331.16184412174067 331.16184412174067 43.702972028968716 0 0 0 0 2.1307196863200843 1.6989700043360187 0 0 + [{I|L}V]A{I|L}{I|L}{I|L} 6.0951 + + 51 + NaN NaN 116832.5 NaN 9463 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12487 57.581 NaN 230980 35 0 24609 0.261 + -1 TIVERYMISI 10 61 620.832728599067 1239.6509042649338 2 620.8317260742188 MULTI HCD FTMS 0 0 0 12480 30892.404296875 0.6121625307824624 1 -0.026256561279296875 7 Oxidation (M) _TIVERYM(Oxidation (M))ISI_ REV__ENSG00000120925|ENST00000527424|RNF170;REV__nc|ENSG00000120925|Q96K19-4|RNF170;REV__nc|ENSG00000120925|Q96K19-6|RNF170 7.101721422024254 0.4377131641736035 2 VS 2 -1 16.766 0 0 1.3525 0 0 166.21914952823573 884.3031099908811 1050.522259519117 0 0 0 0 0 0 0 0.8807196863200843 0 VS 1.3525 - 50 + NaN NaN 135175.2 NaN 9464 3021 12480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12489 57.586 NaN 631640 35 0 62106 0.327 + 9071 HPEYGEVIQL 10 68 592.801208023902 NaN 0 592.801025390625 PEAK HCD FTMS 0 0 0 12488 245949.25 0.17819812311774488 9 -0.22467803955078125 1 Unmodified _HPEYGEVIQL_ ENSG00000114784|ENST00000232905|EIF1B;ENSG00000173812|ENST00000469257|EIF1;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF 39.94969957227396 0.13663696453471003 2 Q{I|L}V 3 9 29.693 0 0 2.5087 0 0 131.09624779654615 709.2587043934133 840.3549521899595 0 0 0 0 0 1.3494850021680094 0 0 0 Q{I|L}V 2.5087 - 34 + NaN NaN 186201.3 NaN 9465 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12490 57.59 NaN 616250 35 0 143520 0.261 + 32009 VYPLMKEYF 9 74 603.2993449273582 1204.5841369215163 2 603.2996826171875 MULTI HCD FTMS 0 0 0 12488 231960.171875 0.0802238601911091 26 -0.6871757507324219 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 51.629811660486645 0.02929079705179888 2 VYPQ 4 6 47.779 0 0 3.9665 0 0 0 714.3258150690061 714.3258150690061 16.581531501239297 0 0 0 0 0.4247425010840047 2 0 0 VYPQ 3.9665 - 189 + NaN NaN 181372.7 NaN 9466 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12491 57.594 NaN 646200 35 0 114660 0.261 + 5733 FPAGYMYPSM 10 78 598.2435232613002 1194.4724935894003 2 598.2435913085938 MULTI HCD FTMS 0 0 0 12488 235729.65625 0.7255781343587722 6 -0.15637588500976562 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 117.59872219059416 4.1811813134037123E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 0 + 72.643 0 0 6.0816 6.0816 86.029 0 0 0 8.455160254500242 54.34192626369743 8.455160254500242 4.758950235313861 0 2.274227503252014 1.2218487496163564 0.6747425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YT][YT][WM]PS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[YT][RD]{M(Oxidation (M))|F}V[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 6.0816;5.6832;4.8894;4.4093;4.3463;3.9074;3.5101;3.1332;2.9858 +;-;-;-;-;-;-;-;- + 660 NaN NaN 182384.2 NaN 9467 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12492 57.597 NaN 427280 35 0 74747 0.261 -1 MPVMEQSVL 9 58 525.253884108496 1048.4932152837919 2 525.2542114257812 MULTI HCD FTMS 0 0 0 12488 198769.328125 0.8270948789730665 -1 0.026256561279296875 4 Oxidation (M) _M(Oxidation (M))PVMEQSVL_ ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B 24.020572477871973 0.15282392193088168 2 SV{I|L} 3 -1 44.693 0 0 4.2626 0 0 731.2995934127829 0 731.2995934127829 0 35.228787452803374 0 0 0 1 0 0.8494850021680094 0 SV{I|L} 4.2626 + + 42 NaN NaN 154864.9 NaN 9468 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12493 57.6 NaN 354160 35 0 58037 0.261 + 17692 MANVELSSL 9 54 490.24197830529727 978.4694036773946 2 490.2421569824219 MULTI HCD FTMS 0 0 0 12488 139212.390625 0.8959089280548245 -1 0.026256561279296875 5 Oxidation (M) _M(Oxidation (M))ANVELSSL_ ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E 51.629811660486645 0.02929079705179888 2 {[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}E{I|L}SS{I|L} 9 4 + 71.092 0 0 7.2657 7.2657 91.741 0 0 0 10 16.478174818886373 10 10 0 1.4247425010840047 1.3979400086720375 0.4247425010840047 0.8494850021680094 {[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}E{I|L}SS{I|L};{[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L};{[CA]|SS}{I|L}KEESS{I|L};{[WT]|[RM]}KG[NS]{[WT]|[RM]} 7.2657;6.2437;5.0143;1.0567 -;-;-;- 164 NaN NaN 145698.6 NaN 9469 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12494 57.604 NaN 479120 35 0 24916 0.261 + 32100 VYRVYVTTF 9 89 574.3111975498837 1146.6078421665673 2 574.311279296875 MULTI HCD FTMS 0 0 0 12488 108156.6640625 0.9512343118054982 1 -0.0329437255859375 6 Unmodified _VYRVYVTTF_ ENSG00000198018|ENST00000370489|ENTPD7 60.07390631473393 0.0174780869009295 2 VYVTT{M(Oxidation (M))|F} 6 3 54.351 0 0 4.7402 0 0 418.23253066230626 0 418.23253066230626 0 26.166805048557844 0 0 0 2.0189301784845295 0 0.3807196863200844 0 + VYVTT{M(Oxidation (M))|F} 4.7402 + + 1350 NaN NaN 162673.9 NaN 9470 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12495 57.607 NaN 232210 35 0 15209 0.263 + 13138 KYLLKLKFNF 10 63 438.60401557366555 1312.7902173211967 3 438.6042175292969 MULTI HCD FTMS 0 0 0 12488 75720.421875 0.7460659208430144 -1 0.026256561279296875 7 Unmodified _KYLLKLKFNF_ ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF 20.580933911654288 0.31860490502175054 2 KA 2 9 22.831 0 0 1.7391 0 0 0 1110.6377450805817 1110.6377450805817 0.8412188239621088 0 0 0 0 0.4247425010840047 0 0 0 KA 1.7391 - 22 + NaN NaN 137212.9 NaN 9471 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12496 57.61 NaN 164250 35 0 5974.3 0.261 + 33188 YEWHEYSR 8 56 585.2546511991294 NaN 0 585.2548217773438 PEAK HCD FTMS 0 0 0 12488 82419.7265625 0.9260421515530746 1 -0.0329437255859375 8 Unmodified _YEWHEYSR_ REV__ENSG00000157593|ENST00000393812|SLC35B2;REV__nc|ENSG00000157593|Q8TB61-2|SLC35B2;REV__nc|ENSG00000157593|Q8TB61-3|SLC35B2;REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2;REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2 4.3292370932331545 0.38822285293237185 2 M 1 -1 6.9897 0 0 0.59818 0 0 260.0088618691587 774.4340914361936 1034.4429533053524 0 0 0 0 0 0 0 0 0 M 0.59818 - 11 + NaN NaN 119786.6 NaN 9472 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12497 57.614 NaN 347130 35 0 25290 0.261 + 25304 SAYEFYHAL 9 72 550.7560475629205 1099.4975421926408 2 550.7560424804688 MULTI HCD FTMS 0 0 0 12488 93869.9609375 0.027108447897040415 24 -0.6247215270996094 9 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 46.020951573049366 0.037705236580089195 2 TE{M(Oxidation (M))|F}YHA{I|L} 7 3 42.228 0 0 3.8407 0 0 220.07696730781407 0 220.07696730781407 0 31.77062918686282 0 0 0 1.774227503252014 0 0.3807196863200844 0 TE{M(Oxidation (M))|F}YHA{I|L} 3.8407 - 273 NaN NaN 150992.6 NaN 9473 3022 12488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12499 57.618 NaN 727530 35 0 192450 0.327 -1 HFDMAVYL 8 52 506.23379151314765 1010.4530300930953 2 506.23382568359375 MULTI HCD FTMS 0 0 0 12498 331195.625 0.7654322574764857 10 -0.24396896362304688 1 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VY{I|L} 3 -1 35.005 0 0 3.4643 0 0 617.2261998088743 0 617.2261998088743 0 29.035984316004217 0 0 0 0.8807196863200843 0 0 0 VY{I|L} 3.4643 + + 11 NaN NaN 198708.7 NaN 9474 3023 12498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12500 57.623 NaN 311260 35 0 26227 0.261 + 31664 VYKAFVMETF 10 59 625.8098371210849 1249.6051213089697 2 625.8102416992188 MULTI HCD FTMS 0 0 0 12498 154965.78125 0.6673164121400356 3 -0.07772445678710938 2 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 87.25819977447905 0.0012128544035916314 2 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 105.35 0 0 8.431 8.431 97.762 0 0 0 0.568109453757657 0.568109453757657 0.568109453757657 71.02305044894763 0 3.1989700043360187 2 0 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}[YV]K{M(Oxidation (M))|F};[YV]D{M(Oxidation (M))|F}{[VA]|[{I|L}G]}K[YV]{M(Oxidation (M))|F};[RP]{[CA]|SS}[R{M(Oxidation (M))|F}]EKP{M(Oxidation (M))|F} 8.431;2.7474;2.5699;0.14364 +;-;-;- + 454 NaN NaN 126432.6 NaN 9475 3023 12498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12501 57.627 NaN 553450 35 0 211570 0.264 -1 SWPRIIMRF 9 57 407.89012929085857 1220.6485584727757 3 407.89031982421875 MULTI HCD FTMS 0 0 0 12498 141540.4375 0.6878088741326923 8 -0.19173431396484375 3 Oxidation (M) _SWPRIIM(Oxidation (M))RF_ ENSG00000197345|ENST00000362034|MRPL21;nc|ENSG00000197345|Q7Z2W9-2|MRPL21 8.155526934196011 0.2891920862272901 2 SG 2 -1 15.846 0 0 1.2982 0 0 947.5373679585229 126.03524194888907 1073.572609907412 0 0 0 0 0 0.5 0 0.28872548999643577 0 SG 1.2982 - 23 + NaN NaN 180613.8 NaN 9476 3023 12498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12502 57.63 NaN 264530 35 0 38634 0.261 -1 IMIGIGSSLL 10 57 510.2948028424861 NaN 0 510.2814025878906 PEAK HCD FTMS 0 0 0 12498 7279.63134765625 0.3549066325164476 1 -0.022975921630859375 4 Oxidation (M) _IM(Oxidation (M))IGIGSSLL_ ENSG00000203795|ENST00000368894|FAM24A 11.640296217721598 0.3302218087712401 2 {M(Oxidation (M))|F}{I|L}[HV]{I|L} 5 -1 12.218 0 0 1.1996 0 0 131.12237500944428 275.10668375045805 406.22905875990233 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}[HV]{I|L} 1.1996 - 30 + NaN NaN 123707.9 NaN 9477 3023 12498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12503 57.633 NaN 282070 35 0 24680 0.261 -1 NTDEPPMVF 9 79 533.2314656541026 1064.4483783750052 2 533.2315673828125 MULTI HCD FTMS 0 0 0 12498 53151.05859375 0.8340868208092131 3 -0.07772445678710938 5 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;USP14-THOC1|1|fusion;USP14-THOC1|2|fusion 32.30548876998284 0.10066689432505688 2 T{I|L}{I|L}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F} 8 -1 41.847 0 0 3.9314 0 0 131.95143390252753 0 131.95143390252753 0 27.582691236838173 0 0 0 1.4247425010840047 0 0 0 T{I|L}{I|L}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F} 3.9314 - 200 + NaN NaN 121642.8 NaN 9478 3023 12498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12504 57.637 NaN 173810 35 0 20954 0.261 -1 MAYGVEPAL 9 59 483.73514176811165 965.4557306030233 2 483.7337341308594 MULTI HCD FTMS 0 0 0 12498 49873.33984375 0.8391790704612477 -3 0.09875869750976562 6 Oxidation (M) _M(Oxidation (M))AYGVEPAL_ ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A 11.640296217721598 0.25978676193971967 2 EWW{M(Oxidation (M))|F} 4 -1 26.198 0 0 2.7135 0 0 299.18765064649295 0 299.18765064649295 0 15.740312677277187 0 0 0 1 0 0 0 EWW{M(Oxidation (M))|F} 2.7135 - 26 + NaN NaN 120189.4 NaN 9479 3023 12498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12506 57.641 NaN 713010 35 0 67523 0.327 + 19974 NYGRVFSEW 9 95 579.2722905520964 1156.5300281709926 2 579.2723999023438 MULTI HCD FTMS 0 0 0 12505 289525.6875 0.624428222702948 3 -0.0876007080078125 1 Unmodified _NYGRVFSEW_ ENSG00000114520|ENST00000251775|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4 92.65332237495696 0.004456439685314431 2 NY{[CT]|[{M(Oxidation (M))|F}G]}[RV]SEW 9 2 + 75.429 0 0 6.522 6.522 85.976 0 0 0 2.7042628290378445 2.7042628290378445 2.7042628290378445 2.7042628290378445 0 1.8807196863200843 1.6989700043360187 1.1549471895720984 0 NY{[CT]|[{M(Oxidation (M))|F}G]}[RV]SEW;[YN]{[NV]|[RG]}[{M(Oxidation (M))|F}V]SEW;NY{[CT]|[{M(Oxidation (M))|F}G]}KGQASW;NY{[CT]|[{M(Oxidation (M))|F}G]}[RV]ESW;[YN]{[NV]|[RG]}[VS]{M(Oxidation (M))|F}EW;NY{[CT]|[{M(Oxidation (M))|F}G]}KG[AG]ASW;[YN]{[NV]|[RG]}G[Y{I|L}]EW;[YN][RK]D{M(Oxidation (M))|F}EW;NY{[CT]|[{M(Oxidation (M))|F}G]}KQQSW;[YN]{[NV]|[RG]}[VS]E{M(Oxidation (M))|F}W 6.522;6.2881;5.8653;5.5002;5.3143;5.0729;4.8328;4.7824;4.288;4.2434 -;+;-;-;-;-;-;-;-;- + 2786 + NaN NaN 196831.1 NaN 9480 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12507 57.646 NaN 1983300 35 0 400310 0.263 + 12654 KWFFQKLRF 9 103 433.9167819209131 1298.7285163629392 3 433.9168395996094 MULTI HCD FTMS 0 0 0 12505 737708.125 0.11708001577872708 -5 0.14130020141601562 2 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 106.94017166704063 0.003441928997083001 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 96.926 0 0 7.4632 7.4632 87.81 0 0 0 16.478174818886373 3.0102999566398125 3.0102999566398125 3.0102999566398125 0 1.6549471895720984 0 0 1.7803695511246982 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F} 7.4632;7.2314;7.0958;6.8026;6.7541;6.5709;6.5224;6.4353;6.3868;6.0936 +;-;-;-;-;-;-;-;-;- + 1971 + NaN NaN 390471.3 NaN 9481 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12508 57.649 NaN 482640 35 0 88985 0.261 + 7467 FVVEHDFIM 9 73 576.7734673513055 1151.532381769411 2 576.7733154296875 MULTI HCD FTMS 0 0 0 12505 223332.4375 0.6191882530737665 -3 0.08217620849609375 3 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 57.47134341890925 0.0211188941628804 2 NVEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 47.556 0 0 4.1298 0 0 132.1084756075565 0 132.1084756075565 0 42.49404740203602 0 0 0 1.305462187404089 0 0 0 NVEHD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.1298 - 177 + NaN NaN 158484.7 NaN 9482 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12509 57.653 NaN 570470 35 0 97977 0.261 + 9747 HYDIPKVSW 9 81 572.7927834572323 1143.5710139812645 2 572.7755126953125 MULTI HCD FTMS 0 0 0 12505 8185.6845703125 0.12726737700366073 4 -0.10045623779296875 4 Unmodified _HYDIPKVSW_ ENSG00000105058|ENST00000263384|FAM32A;nc|ENSG00000105058|Q9Y421-3|FAM32A 12.531546534597751 0.2520865569484384 2 ASVSW 5 6 41.788 0 0 3.6542 0 0 595.3126654478646 0 595.3126654478646 0 12.267397466365857 0 0 0 0 0 0.805462187404089 0 ASVSW 3.6542 - 498 + NaN NaN 177932 NaN 9483 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12510 57.656 NaN 112370 35 0 6593.2 0.261 + 18482 MQQFQPQNRL 10 42 645.3270191361526 1288.639485339105 2 645.3280029296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MQQFQPQNRL_ REV__ENSG00000119318|ENST00000358015|RAD23B;REV__nc|ENSG00000119318|P54727-2|RAD23B;REV__ZNF462-RAD23B|1|fusion 1.4819007175156935 0.4674597685733628 2 G 1 -1 2.4743 0 0 0.192 0 0 622.1906460830488 606.3948458307249 1228.5854919137737 0 0 0 0 0 0 0 0 0 G 0.192 - 1 + NaN NaN 109070.9 NaN 9484 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12511 57.665 NaN 68462 35 0 10495 0.264 + 15909 LPLQLVEK 8 36 470.29733006412516 938.5801071950503 2 470.29736328125 MULTI HCD FTMS 0 0 0 12505 6979.28271484375 0.00890797513531654 16 -0.4142189025878906 6 Unmodified _LPLQLVEK_ REV__ENSG00000135519|ENST00000257981|KCNH3 6.723162845929126 0.5320176132289695 2 {I|L}P{I|L} 3 -1 27.435 0 0 2.923 0 0 0 612.3374117486936 612.3374117486936 27.43501263708417 0 0 0 0 0.4247425010840047 0 0 0 {I|L}P{I|L} 2.923 + + 4 + NaN NaN 93185.2 NaN 9485 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12512 57.668 NaN 165920 35 0 10295 0.261 -1 0 36 635.5411528842174 NaN 0 635.248291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 {I|L} 1 -1 3.9794 0 0 0.31357 0 0 497.97230713386585 654.9703463190061 1152.942653452872 0 0 0 0 0 0 0 0 0 {I|L} 0.31357 - 1 + NaN NaN 112557.3 NaN 9486 3024 12505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12514 57.673 NaN 951190 35 0 154050 0.327 -1 DPRNATSVCI 10 97 566.7740010513621 1131.5334491695241 2 566.7750244140625 MULTI HCD FTMS 0 0 0 12513 440172.40625 0.009436859981277742 60 -1.5715408325195312 1 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 32.78568957990786 0.20801173326193015 2 KSVYTSVSW 9 -1 75.614 0 0 6.6825 0 0 75.98837635934372 0 75.98837635934372 0 51.114780490030114 0 0 0 0.5 0 1.7416440611282624 0 KSVYTSVSW 6.6825 - 3875 + NaN NaN 242860.6 NaN 9487 3025 12513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12515 57.678 NaN 498640 35 0 54066 0.261 + 28019 TFTFSHATF 9 72 529.7509373970008 1057.4873218608016 2 529.7509765625 MULTI HCD FTMS 0 0 0 12513 232385.875 0.39106071569807066 8 -0.189117431640625 2 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 96.28474662873226 0.004361282420133734 2 TAHS{M(Oxidation (M))|F}T{[ET]|[MV]} 8 6 55.8 0 0 5.2766 0 0 165.07884413886876 0 165.07884413886876 0 39.34878345338852 0 0 0 1.8494850021680094 0 1.4731975075880328 0 TAHS{M(Oxidation (M))|F}T{[ET]|[MV]} 5.2766 - 815 NaN NaN 152767.2 NaN 9488 3025 12513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12516 57.681 NaN 1302300 35 0 84660 0.261 + 22741 QYESKVFYL 9 110 588.8005820977656 1175.5866112623312 2 588.8005981445312 MULTI HCD FTMS 0 0 0 12513 557618.5 0.24567651653183764 -5 0.1536102294921875 3 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 183.0388951392065 8.687204194748383E-13 2 [YQ]ESKV{M(Oxidation (M))|F}Y{I|L} 9 0 + 78.345 0 0 6.6643 6.6643 93.993 0 0 0 15.354327142566845 14.09256854528806 14.09256854528806 41.86471065501944 0 2.579689690656103 0.9208187539523752 1.7803695511246982 2.329689690656103 + + [YQ]ESKV{M(Oxidation (M))|F}Y{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}ESKVE[QA]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}VKS{[CA]|SS}D{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}TDKVE[QA]{I|L};[Y{M(Oxidation (M))|F}]VK{[ES]|[DT]|[{I|L}C]}QY{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}ESK[QT][TP]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}T[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[RH];[{M(Oxidation (M))|F}V]{[CA]|SS}SKVE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}TDK[QT][TP]{I|L};[Y{M(Oxidation (M))|F}]VK{[ES]|[DT]|[{I|L}C]}[AG]Y{I|L} 6.6643;3.1031;2.7775;2.6973;2.5741;2.2817;2.1168;2.0412;1.8758;1.7908 +;-;-;-;-;-;-;-;-;- + 2725 NaN NaN 286324.8 NaN 9489 3025 12513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12517 57.685 NaN 494780 35 0 86994 0.261 + 1783 CLSPLPQGGSW 11 67 572.7748978498997 1143.5352427665994 2 572.7752685546875 MULTI HCD FTMS 0 0 0 12513 87635.078125 0.7997893236696583 2 -0.05572509765625 4 Unmodified _CLSPLPQGGSW_ REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF 34.93206674587334 0.1695891461859059 2 RP[EP]SVSW 8 -1 60.68 0 0 5.3064 0 0 187.06326491523595 0 187.06326491523595 0 43.163063002478594 0 0 0 2 0 0.3807196863200844 0.3252574989159953 RP[EP]SVSW 5.3064 - 681 NaN NaN 160758.3 NaN 9490 3025 12513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12518 57.688 NaN 189990 35 0 9610.3 0.261 -1 SFRRHMIM 8 64 547.2749818524455 NaN 0 547.2604370117188 PEAK HCD FTMS 0 0 0 12513 7828.41845703125 1 0 0 5 Oxidation (M) _SFRRHMIM(Oxidation (M))_ ENSG00000188868|ENST00000293725|ZNF563;ZNF563|p.H387L|1|0.08|ENSG00000188868|chr19:12318865-12318865|T/A|missense_variant 5.760428011301431 0.38822285293237185 2 M 1 -1 5.4846 0 0 0.502 0 0 266.1548920572505 692.3158053033811 958.4706973606317 0 0 0 0 0 0 0 0 0 M 0.502 + + 27 + NaN NaN 110519.2 NaN 9491 3025 12513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12519 57.691 NaN 120590 35 0 5417.3 0.261 + -1 THGKNCCCYGE 11 30 636.2337036132812 NaN 0 636.2337036132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _THGKNC(Carbamidomethyl (C))CCYGE_ REV__nc|ENSG00000173933|Q9BWF3-4|RBM4 0 0.34212014346876374 2 G 1 -1 3.9794 0 0 0.31347 0 0 534.6117774396499 674.8170870416624 1209.4288644813123 0 0 0 0 0 0 0 0 0 G 0.31347 + + 1 + NaN NaN 107957.2 NaN 9492 3025 12513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12521 57.696 NaN 991880 35 0 61775 0.327 + 33659 YKEVMKQYP 9 94 593.3027199185819 1184.5908869039638 2 593.2827758789062 MULTI HCD FTMS 0 0 0 12520 75959.40625 0.08935131421036364 15 -0.3823509216308594 1 Unmodified _YKEVMKQYP_ ENST00000478484.5_1_2:27851925-27854072:+|nuORF 11.640296217721598 0.25978676193971967 2 YE{I|L}D{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}H]|[RQ]} 8 6 46.667 0 0 3.9395 0 0 128.13566661923443 0 128.13566661923443 0 17.513239383074982 0 0 0 0 0 1.455112052208703 0 YE{I|L}D{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}H]|[RQ]} 3.9395 - 1393 + NaN NaN 236316.8 NaN 9493 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12522 57.701 NaN 366060 35 0 26446 0.261 -1 0 69 582.769221728906 1163.523890524612 2 582.77001953125 MULTI HCD FTMS 0 0 0 12520 126207.7734375 0.013055100970383194 61 -1.6009254455566406 2 NaN NaN 2 SMSW 4 -1 38.392 0 0 3.2996 0 0 654.310838767775 0 654.310838767775 0 13.4580630860318 0 0 0 1.3494850021680094 0 0.3494850021680094 0 SMSW 3.2996 - 148 NaN NaN 140628.1 NaN 9494 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12523 57.704 NaN 692670 35 0 65818 0.263 + 11859 KFASLIFFTLE 11 89 439.2484017078053 1314.7233757236158 3 439.24835205078125 MULTI HCD FTMS 0 0 0 12520 153434.9375 0.42517456478413373 -3 0.07772445678710938 3 Unmodified _KFASLIFFTLE_ REV__ENSG00000146802|ENST00000312814|TMEM168;REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant 9.764250979337305 0.37200617284565546 2 K{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q 6 -1 39.442 0 0 3 0 0 0 559.3360006526276 559.3360006526276 19.978109286651247 0 0 0 0 0.805462187404089 0 0.7742275032520141 0 K{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q 3 - 193 + NaN NaN 182993.9 NaN 9495 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12524 57.708 NaN 378400 35 0 51334 0.261 + 11671 IYVTGGHLF 9 64 503.77152752808905 1005.5285021229781 2 503.7713928222656 MULTI HCD FTMS 0 0 0 12520 79745.5390625 0.9165883943073516 -1 0.0228729248046875 4 Unmodified _IYVTGGHLF_ ENSG00000130487|ENST00000648057|KLHDC7B;KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;nc|ENSG00000130487|Q96G42|KLHDC7B 44.40701690623563 0.04511410083598184 2 [Y{I|L}]VT 4 5 37.396 0 0 3.719 0 0 0 526.2425273517468 526.2425273517468 15.406075122407685 0 0 0 0 1.5 1.3979400086720375 0 0 + [Y{I|L}]VT 3.719 + + 43 NaN NaN 149656.2 NaN 9496 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12525 57.711 NaN 295710 35 0 48528 0.261 + 31638 VYISNGQVL 9 65 496.77415646862386 991.5337600040477 2 496.7738342285156 MULTI HCD FTMS 0 0 0 12520 60784.609375 0.43907990191790564 5 -0.11400985717773438 5 Unmodified _VYISNGQVL_ ENSG00000113811|ENST00000495461|SELENOK;ENST00000487571.1_1_3:53922418-53925815:-|nuORF 22.736283301280096 0.1639198954644489 2 ST[C(Carbamidomethyl (C))H]{I|L}P{M(Oxidation (M))|F} 7 9 31.503 0 0 3.1772 0 0 131.17526310808597 0 131.17526310808597 0 6.726307269461742 0 0 0 0.5 0 0.3807196863200844 0 ST[C(Carbamidomethyl (C))H]{I|L}P{M(Oxidation (M))|F} 3.1772 - 243 + NaN NaN 127314.7 NaN 9497 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12526 57.714 NaN 172150 35 0 6035.1 0.261 + 35464 YYEYNHDLF 9 50 632.2696564926487 1262.5247600520972 2 632.2699584960938 MULTI HCD FTMS 0 0 0 12520 53016.3671875 0.07531210024994478 25 -0.6319732666015625 6 Unmodified _YYEYNHDLF_ ENSG00000151748|ENST00000324679|SAV1 9.38312468134398 0.279288223203164 2 YYE 3 6 24.666 0 0 1.9537 0 0 0 804.3341768854124 804.3341768854124 8.46787486224656 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + YYE 1.9537 + + 52 + NaN NaN 115302.9 NaN 9498 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12527 57.717 NaN 134970 35 0 6156.3 0.261 -1 QYFDSRGMFI 10 37 640.2927866104372 NaN 0 640.2940063476562 PEAK HCD FTMS 0 0 0 12520 32497.201171875 0.6135640832902376 -3 0.07772445678710938 7 Oxidation (M) _QYFDSRGM(Oxidation (M))FI_ ENSG00000151353|ENST00000281017|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18 1.4819007175156935 0.33891598740166873 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.42896 0 0 148.1270028089619 980.3559054010374 1128.4829082099993 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.42896 + + 1 + NaN NaN 114813.6 NaN 9499 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12528 57.721 NaN 146500 35 0 78039 0.264 + -1 CHNCDCDCGC 10 34 448.11609959992757 NaN 0 448.11541748046875 PEAK HCD FTMS 0 0 0 12520 30157.86328125 0.5049028215429463 55 -1.4508171081542969 8 Acetyl (Protein N-term),4 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))HNC(Carbamidomethyl (C))DC(Carbamidomethyl (C))DC(Carbamidomethyl (C))GC_ REV__ENST00000451025.6_2_6:43608345-43608465:+|nuORF 0 0.34018428902965525 2 M 1 -1 2.7642 0 0 0.30912 0 0 330.92939050669264 429.2136629693969 760.1430534760896 0 0 0 0 0 0 0 0 0 M 0.30912 - 1 + NaN NaN 101562.5 NaN 9500 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12529 57.724 NaN 230760 35 0 13404 0.261 + 13969 KYSEIQQLL 9 58 561.3139343573516 1120.6133157815032 2 561.3152465820312 MULTI HCD FTMS 0 0 0 12520 43128.73828125 0.4396971752622005 5 -0.11400985717773438 9 Unmodified _KYSEIQQLL_ ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;nc|ENSG00000072121|Q68DK2-5|ZFYVE26 10.799506525563784 0.2670509983294061 2 Y{I|L}{I|L} 3 6 21.427 0 0 1.912 0 0 713.3720990288471 0 713.3720990288471 0 5.942124970647029 0 0 0 0 0 0 0 Y{I|L}{I|L} 1.912 - 35 NaN NaN 133140 NaN 9501 3026 12520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12531 57.729 NaN 362780 35 0 52305 0.327 + 15270 LPAAGVGDMVM 11 58 538.7593792665417 1075.5042055998833 2 538.759765625 MULTI HCD FTMS 0 0 0 12530 128028.9609375 0.5375528443443759 4 -0.08115768432617188 1 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 47.748688679222035 0.09066307675719942 2 VM 2 9 25.217 0 0 2.3446 0 0 827.3840483151366 0 827.3840483151366 0 3.116202354569495 0 0 0 0.4247425010840047 0 0 0 + VM 2.3446 + + 88 NaN NaN 138370.5 NaN 9502 3027 12530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12532 57.733 NaN 212970 35 0 23933 0.261 + 8430 GYSEHFVEF 9 51 557.7454155041603 1113.4762780751205 2 557.7459716796875 MULTI HCD FTMS 0 0 0 12530 47189.36328125 0.011682079582115557 31 -0.8142929077148438 2 Unmodified _GYSEHFVEF_ ENSG00000100938|ENST00000399440|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-2|GMPR2;nc|ENSG00000100938|Q9P2T1-3|GMPR2 21.74664581756881 0.17247014374749275 2 E{M(Oxidation (M))|F} 2 7 34.464 0 0 3.0952 0 0 819.3551060553924 0 819.3551060553924 0 28.979400086720375 0 0 0 1 0 0.5 0 + E{M(Oxidation (M))|F} 3.0952 + + 25 + NaN NaN 121145.4 NaN 9503 3027 12530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12533 57.737 NaN 136030 35 0 9153.2 0.262 + 21621 PYPFTHHWQF 10 50 453.88042653904404 1358.619450217332 3 454.2149963378906 MULTI HCD FTMS 0 0 0 12530 39652.24609375 0.11729777748648097 27 -0.6943473815917969 3 Unmodified _PYPFTHHWQF_ ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A 12.174745833636585 0.39723355204102767 2 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.6185 0 0 1193.540789183932 0 1193.540789183932 0 15 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6185 + + 13 + NaN NaN 95158.9 NaN 9504 3027 12530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12535 57.742 NaN 930670 35 0 235470 0.327 + 5047 FDPNEQRF 8 84 526.7434424480238 1051.4723319628474 2 527.2662963867188 MULTI HCD FTMS 0 0 0 12534 39252.953125 0.04410130445074378 -10 0.28094482421875 1 Unmodified _FDPNEQRF_ REV__tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1 9.347437153973935 0.5250182646323369 2 [{I|L}P]{M(Oxidation (M))|F}DKETG 8 -1 44.123 0 0 4.1963 0 0 0 161.01004318526898 161.01004318526898 11.106858034306775 0 0 0 0 0 1.6989700043360187 1.0044321917401078 0 [{I|L}P]{M(Oxidation (M))|F}DKETG 4.1963 - 724 NaN NaN 226003.7 NaN 9505 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12536 57.746 NaN 625530 35 0 153680 0.261 -1 HFDMAVYL 8 63 506.23379151314765 1010.4530300930953 2 506.2339172363281 MULTI HCD FTMS 0 0 0 12534 274008.65625 0.6332664096077231 15 -0.3797264099121094 2 Oxidation (M) _HFDM(Oxidation (M))AVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VY{I|L} 3 -1 31.867 0 0 3.1537 0 0 617.2248402326187 0 617.2248402326187 0 20.89780305324595 0 0 0 0.805462187404089 0 0 0 VY{I|L} 3.1537 + + 50 NaN NaN 177534.2 NaN 9506 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12537 57.75 NaN 572600 35 0 147070 0.261 + 32010 VYPLMKEYF 9 55 603.2993449273582 1204.5841369215163 2 603.2998657226562 MULTI HCD FTMS 0 0 0 12534 276765.90625 0.09572000740123011 32 -0.8638381958007812 3 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 47.594388314883695 0.03493607795751234 2 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 68.088 0 0 5.6524 5.6524 90.499 0 0 0 15.748774155115314 43.081597033474424 15.748774155115314 16.945378125959117 0 1.9386218330464624 1.6989700043360187 0.3807196863200844 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}[{I|L}P]P{M(Oxidation (M))|F};[YV][{I|L}P]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YQ][Y{I|L}];[Y{I|L}][VP]{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[YQ][Y{I|L}] 5.6524;4.2457;3.9921;3.7987;3.5192;2.9533;2.492;1.6656;0.35885 -;-;-;-;-;-;-;-;- 183 NaN NaN 179697.5 NaN 9507 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12538 57.753 NaN 687880 35 0 115470 0.261 + 5734 FPAGYMYPSM 10 94 598.2435232613002 1194.4724935894003 2 598.2440795898438 MULTI HCD FTMS 0 0 0 12534 280472.8125 0.8632979968217628 12 -0.3137626647949219 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 112.59319219568356 4.798275876566979E-05 2 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 65.072 0 0 5.4477 0 0 64.00117573803512 0 64.00117573803512 0 55.005332642726565 0 0 0 1.4247425010840047 0 1.7803695511246984 0 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.4477 - 959 + NaN NaN 191443.9 NaN 9508 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12539 57.756 NaN 284960 35 0 32232 0.261 + 7150 FSFKLGIDKI 10 78 584.3420189317824 1166.6694849303647 2 584.3411254882812 MULTI HCD FTMS 0 0 0 12534 103251.2890625 0.9267264183642122 1 -0.032711029052734375 5 Unmodified _FSFKLGIDKI_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|47;REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|22;REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|20;REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|48;REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|34;REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|2|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|5;REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|2|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|33;REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|45;REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|3;REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|202|1|anti-sense;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|184|1|anti-sense 15.738622578938676 0.3638982514236938 2 [QP]{I|L}{M(Oxidation (M))|F}{[HG]|PP}{I|L}D 8 -1 30.015 0 0 2.5727 0 0 0 256.1666002956145 256.1666002956145 24.072880170965526 0 0 0 0 1.0387254899964358 0 0 0.3252574989159953 [QP]{I|L}{M(Oxidation (M))|F}{[HG]|PP}{I|L}D 2.5727 - 274 NaN NaN 130215.5 NaN 9509 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12540 57.76 NaN 291480 35 0 19563 0.261 -1 KYLEMIYSM 9 61 597.2828791603528 1192.5512053875054 2 597.2831420898438 MULTI HCD FTMS 0 0 0 12534 72022.59375 0.5902131412088839 4 -0.10106277465820312 6 Oxidation (M) _KYLEMIYSM(Oxidation (M))_ ENSG00000205339|ENST00000379719|IPO7 37.07464296494664 0.07877380486334713 2 EM{I|L}YCM 6 -1 55.851 0 0 4.6834 0 0 404.24278456855626 0 404.24278456855626 0 13.509562869230862 0 0 0 2.1861818737241734 0 0 0 EM{I|L}YCM 4.6834 - 461 NaN NaN 133246.6 NaN 9510 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12541 57.763 NaN 172730 35 0 23974 0.261 + 24081 RYAKIVEIPF 10 59 618.361309919247 1234.708066905294 2 618.8640747070312 MULTI HCD FTMS 0 0 0 12534 47067.88671875 0.6053473159526231 -1 0.01285552978515625 7 Unmodified _RYAKIVEIPF_ ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1 10.898955630103616 0.4091668631510381 2 [Y{I|L}]Y 3 8 19.666 0 0 1.5927 0 0 0 792.4740330520314 792.4740330520314 1.9627248839266578 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]Y 1.5927 - 15 NaN NaN 115190.8 NaN 9511 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12542 57.766 NaN 309020 35 0 12807 0.261 + 25305 SAYEFYHAL 9 67 550.7560475629205 1099.4975421926408 2 550.7559814453125 MULTI HCD FTMS 0 0 0 12534 61836.5078125 0.017857595054142916 30 -0.8014373779296875 8 Unmodified _SAYEFYHAL_ ENSG00000116016|ENST00000263734|EPAS1 42.09456458481378 0.05572955244001856 2 {[SA]|[TG]}YE{M(Oxidation (M))|F}YH[{I|L}A] 9 0 + 50.168 0 0 4.5628 4.5628 89.662 0 0 0 21.217824153848248 4.762036441594191 4.762036441594191 25.479465618955498 0 1.305462187404089 0 0 0 + + {[SA]|[TG]}YE{M(Oxidation (M))|F}YH[{I|L}A];[YE]TG{M(Oxidation (M))|F}HY[{I|L}A];[YE]AS{M(Oxidation (M))|F}HY[{I|L}A];[{M(Oxidation (M))|F}E]SS{M(Oxidation (M))|F}HY[{I|L}A] 4.5628;2.2454;1.8835;1.5215 +;-;-;- + 241 + NaN NaN 131083.8 NaN 9512 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12543 57.77 NaN 158910 35 0 8831.3 0.261 -1 EYMEHVYLI 9 52 606.7838322096045 1211.553111486009 2 606.7841186523438 MULTI HCD FTMS 0 0 0 12534 67336.5703125 0.09615176347303465 24 -0.6224517822265625 9 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 2 {I|L}{I|L} 2 -1 23.583 0 0 1.9466 0 0 967.3730205933507 0 967.3730205933507 0 12.614393726401687 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.9466 + + 17 NaN NaN 117347.8 NaN 9513 3028 12534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12545 57.775 NaN 187710 35 0 14660 0.326 + 31665 VYKAFVMETF 10 60 625.8098371210849 1249.6051213089697 2 625.8102416992188 MULTI HCD FTMS 0 0 0 12544 102656.1328125 0.4420596707223613 9 -0.22539520263671875 1 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 74.19965305603844 0.012609120674105788 2 [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 10 0 + 94.971 0 0 7.6001 7.6001 94.758 0 0 0 0.8412188239621088 0.8412188239621088 0.8412188239621088 25.84121882396211 0 3.305462187404089 2 0.7302046884880937 0 + + [YV]KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YK]VA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 7.6001;5.5321 +;- + 202 + NaN NaN 123042.8 NaN 9514 3029 12544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12546 57.779 NaN 284930 35 0 27597 0.264 -1 0 69 466.540545165831 2327.666343496155 5 466.74127197265625 MULTI HCD FTMS 0 0 0 12544 69309.1328125 0.7132661159382281 2 -0.03559112548828125 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 0.57976 0 0 2162.587575651232 0 2162.587575651232 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.57976 - 22 + NaN NaN 141184 NaN 9515 3029 12544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12547 57.783 NaN 258820 35 0 40102 0.261 + -1 PNRMCVSI 8 58 496.7343526402215 991.454152347243 2 496.7341003417969 MULTI HCD FTMS 0 0 0 12544 102061.3984375 0.6413878852775245 -3 0.07841873168945312 3 Carbamidomethyl (C),Oxidation (M) _PNRM(Oxidation (M))C(Carbamidomethyl (C))VSI_ REV__ENST00000256646.6_1_1:120454802-120454955:-|nuORF 21.74664581756881 0.4337896562907935 2 VS{I|L} 3 -1 40.445 0 0 4.0794 0 0 674.259115893031 0 674.259115893031 0 22.235790156711097 0 0 0 1 0 0.4247425010840047 0 VS{I|L} 4.0794 + + 135 NaN NaN 124143.5 NaN 9516 3029 12544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12548 57.786 NaN 365100 35 0 125710 0.262 + -1 CLLPRRYPF 9 47 407.89012929085857 1220.6485584727757 3 408.2251892089844 MULTI HCD FTMS 0 0 0 12544 44447.7265625 0.3219796536210019 12 -0.30393218994140625 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLPRRYPF_ REV__ENST00000367350.4_1_1:200587964-200589848:-|nuORF 5.296884461304476 0.3108627248283497 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3919 0 0 1055.5696227811725 0 1055.5696227811725 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3919 + + 11 + NaN NaN 139533.5 NaN 9517 3029 12544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12549 57.789 NaN 263140 35 0 23588 0.261 + 12187 KKMTEIQVELE 11 66 449.9116595627422 1346.7131492884266 3 449.91204833984375 MULTI HCD FTMS 0 0 0 12544 77699.734375 0.7175436915590496 -1 0.032711029052734375 5 Unmodified _KKMTEIQVELE_ REV__ENSG00000122417|ENST00000460698|ODF2L;REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L;REV__nc|ENSG00000122417|Q9ULJ1-3|ODF2L;REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L;REV__nc|ENSG00000122417|Q9ULJ1-6|ODF2L;REV__nc|ENSG00000122417|Q9ULJ1|ODF2L 5.868138319507137 0.39318500527288264 2 [W{I|L}][KG]T 5 -1 15.942 0 0 1.1838 0 0 0 758.3792008843828 758.3792008843828 4.515449934959719 0 0 0 0 0 1.6989700043360187 0 0 [W{I|L}][KG]T 1.1838 - 38 NaN NaN 130253 NaN 9518 3029 12544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12551 57.794 NaN 9921500 35 0 1955200 0.327 + 12655 KWFFQKLRF 9 129 433.9167819209131 1298.7285163629392 3 433.9170837402344 MULTI HCD FTMS 0 0 0 12550 5939497.5 0.94264443816138 1 -0.01613616943359375 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 149.91393105778798 8.917243180786556E-06 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 101.66 0 0 7.8275 7.8275 88.73 0 0 0 15.978396506218502 3.750612633917001 3.750612633917001 3.750612633917001 0 1.9749073637206092 0 0 2.0585456211725206 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F} 7.8275;7.5387;7.2259;7.167;7.1185;6.8782;6.8297;6.5654;6.5169;6.458 +;-;-;-;-;-;-;-;-;- + 7081 + NaN NaN 655846.4 NaN 9519 3030 12550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12552 57.798 NaN 521340 35 0 87031 0.261 + 7468 FVVEHDFIM 9 80 576.7734673513055 1151.532381769411 2 576.773681640625 MULTI HCD FTMS 0 0 0 12550 275479.1875 0.7637649003240095 3 -0.06837081909179688 2 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 77.98433622928108 0.006504613272346738 2 NVE[HD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 58.097 0 0 5.0452 0 0 132.1132166632754 0 132.1132166632754 0 52.41048801331864 0 0 0 2.110924374808178 0 0.4247425010840047 0 NVE[HD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.0452 - 181 + NaN NaN 171626.3 NaN 9520 3030 12550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12553 57.802 NaN 236770 35 0 10470 0.261 + 20785 PHCANTEIIVK 11 57 612.8220087824704 1223.6294646317408 2 612.8226318359375 MULTI HCD FTMS 0 0 0 12550 68911.28125 1 0 0 3 Unmodified _PHCANTEIIVK_ ENSG00000169429|ENST00000307407|CXCL8 10.150570793230772 0.3686401556411756 2 V{I|L}NAT{[MS]|[{M(Oxidation (M))|F}A]} 7 9 61.286 0 0 5.0085 0 0 489.26927382636876 0 489.26927382636876 0 60.80152905678226 0 0 0 2.6549471895720984 0 0 0 V{I|L}NAT{[MS]|[{M(Oxidation (M))|F}A]} 5.0085 - 67 NaN NaN 132224.5 NaN 9521 3030 12550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12554 57.805 NaN 172680 35 0 22185 0.262 + 16512 LTHYLLPY 8 48 510.28145682106833 1018.5483607089367 2 510.2816162109375 MULTI HCD FTMS 0 0 0 12550 84094.140625 0.5946255031285089 2 -0.04889678955078125 4 Unmodified _LTHYLLPY_ ENSG00000172992|ENST00000651974|DCAKD 13.50788311687929 0.4944073034352369 2 {I|L}{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.5539 0 0 627.3329681690605 0 627.3329681690605 0 31.593793813122062 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L} 3.5539 - 42 NaN NaN 114751.3 NaN 9522 3030 12550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12556 57.81 NaN 2952400 35 0 187920 0.327 + 22742 QYESKVFYL 9 125 588.8005820977656 1175.5866112623312 2 588.8008422851562 MULTI HCD FTMS 0 0 0 12555 2243178 0.9883032162685681 1 -0.0327606201171875 1 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 185.05004568166646 7.3094861853412E-13 2 [YQ]ESKV{M(Oxidation (M))|F}Y{I|L} 9 0 + 79.392 0 0 6.7534 6.7534 90.739 0 0 0 9.838942739842253 9.838942739842253 9.838942739842253 9.838942739842253 0 2.579689690656103 1 1.8411290632962718 2.41944517631652 + + [YQ]ESKV{M(Oxidation (M))|F}Y{I|L};QYESKV{M(Oxidation (M))|F}Y{I|L};[KS]EPVKSEC(Carbamidomethyl (C)){I|L};{[ES]|[DT]|[{I|L}C]}KPVKSEC(Carbamidomethyl (C)){I|L};[KS]EYQV{M(Oxidation (M))|F}Y{I|L};[KS]EPVKSE[CG]{I|L};{[ES]|[DT]|[{I|L}C]}KYQV{M(Oxidation (M))|F}Y{I|L};[YQ]ESK[Y{M(Oxidation (M))|F}]V{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}ESKV[DN]V{I|L};{[ES]|[DT]|[{I|L}C]}KPVKSE[CG]{I|L} 6.7534;5.9165;4.9022;4.6169;4.3375;4.1227;4.0522;4.0343;3.8614;3.8373 +;+;-;-;-;-;-;-;-;- + 5663 NaN NaN 526214 NaN 9523 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12557 57.815 NaN 932930 35 0 134310 0.261 -1 DPRNATSVCI 10 88 566.7740010513621 1131.5334491695241 2 566.7750854492188 MULTI HCD FTMS 0 0 0 12555 274906.6875 0.005893726823895782 66 -1.75335693359375 2 Carbamidomethyl (C) _DPRNATSVC(Carbamidomethyl (C))I_ ENSG00000102098|ENST00000251900|SCML2 16.149105407346934 0.3600587335443843 2 {I|L}SVSW 5 -1 59.691 0 0 5.2753 0 0 541.2289390849601 0 541.2289390849601 0 35.17085292514289 0 0 0 2 0 0.9258337024346173 0 {I|L}SVSW 5.2753 - 3620 + NaN NaN 224704.1 NaN 9524 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12558 57.818 NaN 1091800 35 0 160330 0.262 + 24595 RYLPKGFLNQF 11 83 461.59085030108923 1381.7507215034677 3 461.5907897949219 MULTI HCD FTMS 0 0 0 12555 260248.21875 0.40117125659567054 -3 0.06830215454101562 3 Unmodified _RYLPKGFLNQF_ ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 51.76506608216692 0.07417021285486863 2 {I|L}NQ{M(Oxidation (M))|F} 4 7 51.855 0 0 3.7528 0 0 861.4859369011367 0 861.4859369011367 0 30.74031267727719 0 0 0 1.1421590589602533 0 0 0.8494850021680094 + {I|L}NQ{M(Oxidation (M))|F} 3.7528 + + 188 NaN NaN 253302 NaN 9525 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12559 57.821 NaN 354070 35 0 31807 0.261 + 28020 TFTFSHATF 9 77 529.7509373970008 1057.4873218608016 2 529.7510375976562 MULTI HCD FTMS 0 0 0 12555 134164.75 0.22577346044140043 14 -0.363861083984375 4 Unmodified _TFTFSHATF_ ENSG00000204713|ENST00000377199|TRIM27 68.08070601005525 0.009709267492204555 2 T[DP]{[ET]|[MV]}T{M(Oxidation (M))|F} 7 6 39.859 0 0 3.7693 0 0 248.11587721992345 0 248.11587721992345 0 25.255354413793363 0 0 0 2.16944517631652 0 0.6694451763165201 0 T[DP]{[ET]|[MV]}T{M(Oxidation (M))|F} 3.7693 - 321 NaN NaN 151044.3 NaN 9526 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12560 57.825 NaN 353370 35 0 80403 0.261 + 13135 KYLLHSLVF 9 57 560.3317002487544 1118.6488475643087 2 560.3321533203125 MULTI HCD FTMS 0 0 0 12555 159083.015625 0.9217065123565621 -1 0.01613616943359375 5 Unmodified _KYLLHSLVF_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 60.07390631473393 0.0174780869009295 2 HS{I|L}V{M(Oxidation (M))|F} 5 4 58.003 0 0 5.1851 0 0 517.3238392560562 0 517.3238392560562 0 28.53917193908117 0 0 0 1.5 0 0.805462187404089 0 + HS{I|L}V{M(Oxidation (M))|F} 5.1851 + + 46 NaN NaN 138616 NaN 9527 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12561 57.828 NaN 247970 35 0 20481 0.261 -1 MPDFDVARI 9 70 540.2630798631416 1078.511606793083 2 540.2635498046875 MULTI HCD FTMS 0 0 0 12555 77561.2265625 0.7066838670991119 -4 0.08115768432617188 6 Oxidation (M) _M(Oxidation (M))PDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 22.65808497894818 0.16459551161911185 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L} 9 -1 + 59.659 0 0 5.5316 5.5316 91.633 0 0 0 41.07509072285026 9.889917747712644 9.889917747712644 33.0519879636241 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}VVDPE 5.5316;2.467 +;- + 78 + NaN NaN 138073.3 NaN 9528 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12562 57.831 NaN 136040 35 0 20323 0.263 + 25055 SAAPPDGLL 9 61 420.7266585422051 839.4387641512102 2 420.7269592285156 MULTI HCD FTMS 0 0 0 12555 37935.15234375 0.49391001574384746 1 -0.0327606201171875 7 Unmodified _SAAPPDGLL_ ENSG00000130522|ENST00000252818|JUND 30.636539890814138 0.10832830463492794 2 [QT]P[DP]{[VA]|[{I|L}G]}{I|L} 8 3 + 28.746 0 0 3.4244 3.4244 80.642 0 0 0 0.5115252244738109 9.141974908773918 0.5115252244738109 0.5115252244738109 0 1.2614393726401687 0 0.4247425010840047 0 [QT]P[DP]{[VA]|[{I|L}G]}{I|L};{[SA]|[TG]}AP[DP]{[VA]|[{I|L}G]}{I|L} 3.4244;3.3635 -;+ + 59 NaN NaN 103055.2 NaN 9529 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12563 57.835 NaN 177810 35 0 18120 0.261 + 31779 VYLQPHGPLLV 11 54 618.361309919247 1234.708066905294 2 618.3624877929688 MULTI HCD FTMS 0 0 0 12555 29679.392578125 0.40333109246481064 3 -0.07506942749023438 8 Unmodified _VYLQPHGPLLV_ nc|ENSG00000108846|O15438-3|ABCC3 4.715918219556657 0.3982382512160552 2 {I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 9 13.952 0 0 1.13 0 0 859.4897938459 0 859.4897938459 0 2.269987279362624 0 0 0 0.5 0 0 0 {I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.13 - 12 NaN NaN 118715.4 NaN 9530 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12564 57.838 NaN 278720 35 0 14850 0.261 + 23299 RHSYGPRVMH 10 39 620.3137874554357 1238.6130219776712 2 621.7003784179688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _RHSYGPRVMH_ REV__ENSG00000102445|ENST00000429979|RUBCNL;REV__nc|ENSG00000102445|Q9H714-1|RUBCNL;REV__nc|ENSG00000102445|Q9H714-3|RUBCNL;REV__nc|ENSG00000102445|Q9H714-4|RUBCNL 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 135717.5 NaN 9531 3031 12555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12566 57.843 NaN 1522400 35 0 136530 0.327 + 12821 KYELDFSHF 9 107 593.2825238435214 1184.5504947538427 2 593.2825317382812 MULTI HCD FTMS 0 0 0 12565 1087049 0.7974237844030535 1 -0.019474029541015625 1 Unmodified _KYELDFSHF_ ENSG00000137462|ENST00000642700|TLR2 208.14542850568068 7.55743023528371E-18 2 [YK]E{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F} 9 0 + 97.169 0 0 8.203 8.203 88.104 0 0 0 0.8414670206038863 0.8414670206038863 0.8414670206038863 0.8414670206038863 0 2.8494850021680094 0 2.0158715643802765 1.372363747448347 + + [YK]E{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};KYE{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YE]K{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YE]{I|L}KD{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[CA]|SS}{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YKD{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};[YT][VG]{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}E;{[TV]|[{I|L}S]}[YG]{I|L}D{M(Oxidation (M))|F}SH{M(Oxidation (M))|F};K{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{[QN]|[E{I|L}]|[KN]}SH{M(Oxidation (M))|F} 8.203;8.132;7.8095;6.6293;5.6963;5.6543;5.22;4.6239;4.5588;2.6084 +;+;-;-;-;-;-;-;-;- + 4542 NaN NaN 332892.5 NaN 9532 3032 12565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12567 57.847 NaN 285660 35 0 21288 0.261 + 4008 ERNLAEQSSM 10 65 582.769221728906 1163.523890524612 2 582.7698974609375 MULTI HCD FTMS 0 0 0 12565 143255.125 0.014818501828067049 67 -1.7760429382324219 2 Unmodified _ERNLAEQSSM_ REV__CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;REV__ENSG00000198216|ENST00000367573|CACNA1E;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000198216|Q15878-3|CACNA1E 12.240655878213236 0.39661705172222156 2 VSW 3 -1 30.177 0 0 2.5936 0 0 773.3327722158214 0 773.3327722158214 0 3.482587709797329 0 0 0 0.8494850021680094 0 0 0 VSW 2.5936 - 145 + NaN NaN 131857.9 NaN 9533 3032 12565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12568 57.851 NaN 340850 35 0 64970 0.262 + 16145 LPTSNNRH 8 78 469.74407037179253 937.4735878103851 2 469.74383544921875 MULTI HCD FTMS 0 0 0 12565 132949.59375 0.2997766043036789 -4 0.10106277465820312 3 Unmodified _LPTSNNRH_ ENSG00000244607|ENST00000310232|CCDC13 21.74664581756881 0.4337896562907935 2 {I|L}PTD 4 5 62.423 0 0 6.6586 0 0 0 508.2387789361938 508.2387789361938 48.354706403678875 0 0 0 0 0.5 1.6989700043360187 0.8494850021680094 0 {I|L}PTD 6.6586 - 42 + NaN NaN 141696.4 NaN 9534 3032 12565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12569 57.854 NaN 257060 35 0 22462 0.261 -1 NTDEPPMVF 9 56 533.2314656541026 1064.4483783750052 2 533.23193359375 MULTI HCD FTMS 0 0 0 12565 41682.62890625 0.6541155030066041 12 -0.30812835693359375 4 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ ENSG00000101557|ENST00000261601|USP14;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;USP14-THOC1|1|fusion;USP14-THOC1|2|fusion 13.90604991867851 0.24021115267848145 2 V{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.6973 0 0 800.3014495193396 0 800.3014495193396 0 7.513487579716767 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.6973 + + 17 + NaN NaN 123815.9 NaN 9535 3032 12565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12570 57.858 NaN 152650 35 0 11099 0.261 + 32748 WRCCTAPTF 9 57 542.7384592696552 1083.4623656061103 2 542.6480712890625 MULTI HCD FTMS 0 0 0 12565 38780.36328125 0.0967807706327517 -12 0.3232536315917969 5 Unmodified _WRCCTAPTF_ ENST00000465806.6_1_X:48935109-48935457:-|nuORF 4.3292370932331545 0.3181982124262546 2 T{M(Oxidation (M))|F} 2 7 17.959 0 0 1.6575 0 0 817.3363107738822 0 817.3363107738822 0 8.494850021680094 0 0 0 0 0 0 0 + T{M(Oxidation (M))|F} 1.6575 + + 36 + NaN NaN 111637.1 NaN 9536 3032 12565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12572 57.862 NaN 715600 35 0 81063 0.327 + 5308 FFIRFVPSRF 10 92 439.2484017078053 1314.7233757236158 3 439.248291015625 MULTI HCD FTMS 0 0 0 12571 225719.421875 0.6254778639254139 4 -0.11141204833984375 1 Unmodified _FFIRFVPSRF_ REV__ENSG00000168229|ENST00000306051|PTGDR 7.945399516374404 0.4332474418965133 2 K[WY]{M(Oxidation (M))|F}Q[K{I|L}]R{M(Oxidation (M))|F} 9 -1 + 50.824 0 0 3.8658 3.8658 82.321 0 0 0 29.498643667695745 0.6863623584101219 0.6863623584101219 3.4948500216800937 0 1.6989700043360187 0 0 0.2742275032520141 K[WY]{M(Oxidation (M))|F}Q[K{I|L}]R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}[WY]Q[K{I|L}]R{M(Oxidation (M))|F};{M(Oxidation (M))|F}K[WY]Q[K{I|L}]R{M(Oxidation (M))|F};[WY]K{M(Oxidation (M))|F}Q[R{I|L}]{M(Oxidation (M))|F}K;[WY]K{M(Oxidation (M))|F}[AG][R{I|L}]{M(Oxidation (M))|F}K;[WY]{M(Oxidation (M))|F}KQ[R{I|L}]{M(Oxidation (M))|F}K;[WY]{M(Oxidation (M))|F}K[AG][R{I|L}]{M(Oxidation (M))|F}K 3.8658;3.6;3.0513;2.9306;2.2302;1.893;1.1926 -;-;-;-;-;-;- 290 + NaN NaN 187795.8 NaN 9537 3033 12571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12573 57.867 NaN 363620 35 0 51966 0.261 + 7469 FVVEHDFIM 9 87 576.7734673513055 1151.532381769411 2 576.7738647460938 MULTI HCD FTMS 0 0 0 12571 94476.8046875 0.2619365476206051 6 -0.16373062133789062 2 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 42.09456458481378 0.05572955244001856 2 [YT][YG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 6 + 36.117 0 0 3.1364 3.1364 86.879 0 0 0 0.8696026259784233 23.72627138490025 0.8696026259784233 14.547634571020673 0 1.3494850021680094 1.5228787452803376 0 0 [YT][YG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[HG]|PP}A{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.1364;1.8731 -;- 139 NaN NaN 138314.3 NaN 9538 3033 12571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12574 57.87 NaN 354090 35 0 32800 0.261 + 27981 TFEVPNKII 9 77 530.8052699513499 1059.5959869694998 2 530.7930908203125 MULTI HCD FTMS 0 0 0 12571 51192.90234375 0.6114201169021627 3 -0.08189010620117188 3 Unmodified _TFEVPNKII_ ENSG00000163565|ENST00000295809|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-2|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 10.073929032068715 0.27331982688540024 2 T{M(Oxidation (M))|F} 2 7 21.722 0 0 2.05 0 0 793.4700235184044 0 793.4700235184044 0 3.304074772359016 0 0 0 0 0 0.4247425010840047 0 + T{M(Oxidation (M))|F} 2.05 + + 105 + NaN NaN 142808.3 NaN 9539 3033 12571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12575 57.874 NaN 182510 35 0 7398.2 0.261 + -1 YNAMWLMRM 9 48 632.2696564926487 1262.5247600520972 2 632.2703247070312 MULTI HCD FTMS 0 0 0 12571 56467.109375 0.08021403252762425 31 -0.8615455627441406 4 3 Oxidation (M) _YNAM(Oxidation (M))WLM(Oxidation (M))RM(Oxidation (M))_ REV__sp|P12978|EBNA2_EBVB9Epstein-Barrnuclearantigen2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA2PE=1SV=1 4.3292370932331545 0.3181982124262546 2 [YN]A 3 -1 25.686 0 0 2.0345 0 0 0 911.3591771265691 911.3591771265691 3.290587192642249 0 0 0 0 0 1.5228787452803376 0 0 [YN]A 2.0345 + + 59 NaN NaN 121184.2 NaN 9540 3033 12571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12576 57.877 NaN 215420 35 0 9947.6 0.261 + -1 FIRSTCLCI 9 64 556.7818311453974 NaN 0 556.7817993164062 PEAK HCD FTMS 0 0 0 12571 75127.171875 0.9673871393340251 6 -0.16373062133789062 5 Carbamidomethyl (C) _FIRSTC(Carbamidomethyl (C))LCI_ REV__ENSG00000118514|ENST00000265605|ALDH8A1;REV__nc|ENSG00000118514|Q9H2A2-4|ALDH8A1 13.90604991867851 0.22786006501039813 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.62883 0 0 611.3712356777104 350.08478723697505 961.4560229146855 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.62883 + + 39 + NaN NaN 126518.4 NaN 9541 3033 12571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12577 57.88 NaN 156900 35 0 9304.1 0.261 -1 QYFDSRGMFI 10 46 640.2927866104372 NaN 0 640.2951049804688 PEAK HCD FTMS 0 0 0 12571 35197.08984375 0.6645393875690061 4 -0.11141204833984375 6 Oxidation (M) _QYFDSRGM(Oxidation (M))FI_ ENSG00000151353|ENST00000281017|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18 2.498486711656943 0.3380459306859131 2 {M(Oxidation (M))|F}D 2 -1 9.464 0 0 0.7402 0 0 291.12535485974314 722.3308809869749 1013.4562358467181 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D 0.7402 + + 6 + NaN NaN 112908 NaN 9542 3033 12571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12579 57.885 NaN 1100600 35 0 398820 0.327 + 16099 LPTDSATVL 9 67 458.7530774057947 915.4916018783895 2 458.7531433105469 MULTI HCD FTMS 0 0 0 12578 976001.4375 0.562234184882605 -3 0.07506942749023438 1 Unmodified _LPTDSATVL_ ENSG00000196878|ENST00000356082|LAMB3 68.08070601005525 0.009709267492204555 2 {[TV]|[{I|L}S]}[EP]SATV{I|L} 9 3 + 73.171 0 0 7.9925 7.9925 97.153 0 0 0 7.113037394097432 59.71639407645036 7.113037394097432 73.17078135898015 0 1.8807196863200843 1.2218487496163564 1.2302046884880937 0 {[TV]|[{I|L}S]}[EP]SATV{I|L} 7.9925 - 91 NaN NaN 255059.7 NaN 9543 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12580 57.89 NaN 1294900 35 0 159310 0.261 + 15737 LPFDKETGF 9 103 527.266196821809 1052.5178407104179 2 527.2662353515625 MULTI HCD FTMS 0 0 0 12578 298471.0625 0.4923176160610071 4 -0.11473464965820312 2 Unmodified _LPFDKETGF_ ENSG00000119705|ENST00000557342|SLIRP;nc|ENSG00000119705|Q9GZT3-2|SLIRP 90.13494162714682 0.004522430935000059 2 {I|L}P{M(Oxidation (M))|F}DKTW 7 3 62.414 0 0 5.93 0 0 0 162.05581079654533 162.05581079654533 30.687587626244124 0 0 0 0 1.579689690656103 1.6989700043360187 0.6307196863200843 0 {I|L}P{M(Oxidation (M))|F}DKTW 5.93 - 1776 + NaN NaN 281331.6 NaN 9544 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12581 57.893 NaN 579330 35 0 145100 0.261 -1 VYPLMKEYF 9 51 603.2993449273582 1204.5841369215163 2 603.2994995117188 MULTI HCD FTMS 0 0 0 12578 278919.8125 0.09646493991472158 38 -1.0540657043457031 3 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 36.506200033944 0.08138327636155518 2 VYP{I|L} 4 -1 54.923 0 0 4.5595 0 0 0 729.2957247369749 729.2957247369749 23.72486274231747 0 0 0 0 0.75 2 0 0 VYP{I|L} 4.5595 + + 74 + NaN NaN 179684.8 NaN 9545 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12582 57.897 NaN 563950 35 0 100430 0.261 + 5735 FPAGYMYPSM 10 85 598.2435232613002 1194.4724935894003 2 598.24365234375 MULTI HCD FTMS 0 0 0 12578 204404.65625 0.629159485045154 18 -0.4790802001953125 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 97.07464715276575 0.000459413715991773 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 10 0 + 64.231 0 0 5.3774 5.3774 83.109 0 0 0 1.1666009493360718 51.69547293177743 1.1666009493360718 0.5115252244738144 0 1.9247425010840047 1 0.7059771852360797 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[YG]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[YC]|[HE]}T[PA]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[YC]|[HE]}T[PA]{M(Oxidation (M))|F}PYS{M(Oxidation (M))|F} 5.3774;5.3346;4.71;4.5519;4.4889;4.4488;4.2166;3.9502;3.8893;3.1152 +;-;-;-;-;-;-;-;-;- + 766 NaN NaN 171638.6 NaN 9546 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12583 57.9 NaN 592260 35 0 113720 0.262 + -1 VEGFHMYI 8 68 506.23379151314765 1010.4530300930953 2 506.2340087890625 MULTI HCD FTMS 0 0 0 12578 256004.53125 0.591656747515602 21 -0.5642662048339844 5 Oxidation (M) _VEGFHM(Oxidation (M))YI_ REV__ENSG00000079999|ENST00000171111|KEAP1 8.593279151180031 0.5292430274356741 2 VY{I|L} 3 -1 26.972 0 0 2.6693 0 0 617.2280750959 0 617.2280750959 0 16.00329725273209 0 0 0 0.5 0 0 0 VY{I|L} 2.6693 - 43 NaN NaN 172334.6 NaN 9547 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12584 57.903 NaN 354330 35 0 57059 0.261 + 25115 SAFECREQ 8 66 485.2086963606127 968.4028397880254 2 485.2085876464844 MULTI HCD FTMS 0 0 0 12578 121992.734375 0.4361850330236541 -7 0.15622711181640625 6 Unmodified _SAFECREQ_ ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31374636-31388147:+|nuORF 11.640296217721598 0.50814828952472 2 SAR 3 5 27.58 0 0 2.848 0 0 0 651.1931856744749 651.1931856744749 20.986198691406326 0 0 0 0 0 0 0 0.28872548999643577 SAR 2.848 - 18 + NaN NaN 144975.5 NaN 9548 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12585 57.907 NaN 190540 35 0 6613.4 0.261 + -1 YNAMWLMRM 9 47 632.2696564926487 1262.5247600520972 2 632.2695922851562 MULTI HCD FTMS 0 0 0 12578 40286.4765625 0.05722872619434041 32 -0.8910560607910156 7 3 Oxidation (M) _YNAM(Oxidation (M))WLM(Oxidation (M))RM(Oxidation (M))_ REV__sp|P12978|EBNA2_EBVB9Epstein-Barrnuclearantigen2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA2PE=1SV=1 4.3292370932331545 0.3181982124262546 2 [YN]A 3 -1 27.447 0 0 2.174 0 0 0 911.3593602320378 911.3593602320378 8.45098040014257 0 0 0 0 0 2 0 0 [YN]A 2.174 + + 53 NaN NaN 125833.7 NaN 9549 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12586 57.91 NaN 199740 35 0 15848 0.261 + 29452 TYTSYLDKF 9 69 569.2766265100344 1136.5387000868686 2 569.276611328125 MULTI HCD FTMS 0 0 0 12578 64599.39453125 0.4587004058267391 5 -0.14089584350585938 8 Unmodified _TYTSYLDKF_ ENSG00000069956|ENST00000261845|MAPK6 27.628801355627647 0.12213550946336599 2 [YT]T[KG]YYE{I|L} 9 6 + 47.113 0 0 4.1453 4.1453 90.24 0 0 0 5.273357566846229 28.440899702813024 5.273357566846229 47.11303739409743 0 1 2 0 0 [YT]T[KG]YYE{I|L} 4.1453 - 122 NaN NaN 135910.7 NaN 9550 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12587 57.913 NaN 171340 35 0 13645 0.261 + 29705 VDDEGCDLVIR 11 53 617.2913451241367 1232.5681373150733 2 617.2921752929688 MULTI HCD FTMS 0 0 0 12578 47451.15234375 1 0 0 9 Unmodified _VDDEGCDLVIR_ REV__ENSG00000005961|ENST00000262407|ITGA2B;REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF;REV__nc|ENSG00000005961|P08514-2|ITGA2B;REV__nc|ENSG00000005961|P08514-3|ITGA2B 4.897010918128616 0.3974440401582579 2 {I|L}RV{I|L} 4 -1 36.67 0 0 2.9751 0 0 733.2231312482437 0 733.2231312482437 0 32.69077524932108 0 0 0 0.9247425010840047 0 0 0 {I|L}RV{I|L} 2.9751 - 10 NaN NaN 124766 NaN 9551 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12588 57.917 NaN 421540 35 0 115200 0.263 + 1607 AYVPGFAHI 9 46 487.7585357133048 973.5025184934096 2 488.26055908203125 MULTI HCD FTMS 0 0 0 12578 36866.4375 0.20251025124398928 -4 0.09120559692382812 10 Unmodified _AYVPGFAHI_ ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF 20.871210003555333 0.18003371494288972 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3 6 37.447 0 0 3.8467 0 0 0 637.3111176987219 637.3111176987219 37.447274948966935 0 0 0 0 1 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3.8467 + + 6 NaN NaN 173107 NaN 9552 3034 12578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12590 57.921 NaN 1579700 35 0 122500 0.327 + 2689 DVHGPDWNL 9 113 526.7434424480238 1051.4723319628474 2 526.74365234375 MULTI HCD FTMS 0 0 0 12589 694932 0.4540724853908709 -3 0.07853317260742188 1 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 107.1870275148908 0.00340162908551068 2 [DV]H[PG]DWN{I|L} 9 0 + 70.516 0 0 6.7064 6.7064 90.571 0 0 0 21.7943808386579 30.316520902749808 21.7943808386579 9.515449934959719 0 1.555462187404089 1.6989700043360187 0.9163865622122673 0.4247425010840047 + + [DV]H[PG]DWN{I|L};[DV]H[PG]WDN{I|L};[DV]H[PG]DWGG{I|L};[DV]H[PG]DW{I|L}N;[DV]H[PG]DWQV;[DV]H[PG]WDGG{I|L};[HV]D[PG]DWN{I|L};[DV]H[PG]D{I|L}WN;[DV]H[PG]WD{I|L}N;[DV]H[PG]DW[AG]V 6.7064;5.8014;5.4267;5.1325;5.0572;4.5217;4.3786;4.2949;4.2275;4.1814 +;-;-;-;-;-;-;-;-;- + 4706 NaN NaN 342036.2 NaN 9553 3035 12589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12591 57.926 NaN 855350 35 0 163750 0.261 + 35934 YYTPITPHL 9 68 552.7899741769265 1103.565395420653 2 552.7901000976562 MULTI HCD FTMS 0 0 0 12589 269161.1875 0.5127662951376978 -3 0.07853317260742188 2 Unmodified _YYTPITPHL_ ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|9|fusion 97.07464715276575 0.004340583992084827 2 YYTP{I|L}T 6 3 53.676 0 0 4.8639 0 0 0 362.1850206030145 362.1850206030145 35.71719669609443 0 0 0 0 2.0924778212679485 1.6989700043360187 1.024227503252014 0 + YYTP{I|L}T 4.8639 + + 173 NaN NaN 239013.9 NaN 9554 3035 12589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12592 57.929 NaN 486980 35 0 61626 0.261 + 18613 MWDRCFNI 8 83 542.7384592696552 1083.4623656061103 2 542.7386474609375 MULTI HCD FTMS 0 0 0 12589 189125.796875 0.4719847577329292 -9 0.22530364990234375 3 Unmodified _MWDRCFNI_ ENST00000437600.8_1_7:101459221-101671393:+|nuORF;ENST00000547394.6_1_7:101459320-101713628:+|nuORF;ENST00000607092.1_1_7:101459320-101559506:+|nuORF 23.1484247019978 0.4234759064137959 2 {NN|[MP]|[D{I|L}]|[EV]}[YN]D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 9 5 + 34.217 0 0 3.1581 3.1581 88.592 0 0 0 1.289850105233299 17.763028672874917 1.289850105233299 31.50514997831991 0 0.4247425010840047 0.8538719643217619 0.8807196863200843 0.25 {NN|[MP]|[D{I|L}]|[EV]}[YN]D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L};[DV]{[QC]|[C(Carbamidomethyl (C))A]}{[WT]|[RM]}[W{M(Oxidation (M))|F}] 3.1581;0.25027 -;- 479 NaN NaN 165837.7 NaN 9555 3035 12589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12593 57.933 NaN 607930 35 0 107560 0.261 + 31398 VYAILTHGI 9 56 493.78719953157434 985.5598461299487 2 493.78753662109375 MULTI HCD FTMS 0 0 0 12589 152124.09375 0.34962810136086436 -3 0.07853317260742188 4 Unmodified _VYAILTHGI_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 131.29775728308752 0.0005262696486345744 2 VYA{I|L}{I|L}THG{I|L} 9 0 + 104.42 0 0 10.595 10.595 92.871 0 0 0 7.288559305164171 7.288559305164171 7.288559305164171 7.288559305164171 0 3.1237125054200234 1.6989700043360187 0.9361818737241735 0 + + VYA{I|L}{I|L}THG{I|L};[YV]A{I|L}{I|L}THG{I|L} 10.595;9.8556 +;+ + 158 + NaN NaN 184402.5 NaN 9556 3035 12589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12594 57.936 NaN 234890 35 0 18965 0.261 -1 EYMEHVYLI 9 52 606.7836750989703 1211.5527972647405 2 607.2855834960938 MULTI HCD FTMS 0 0 0 12589 78275.859375 0.14566370290885733 -19 0.5064201354980469 5 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 2 {I|L}{I|L} 2 -1 19.821 0 0 1.636 0 0 967.3770933424641 0 967.3770933424641 0 3.622731327798544 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 1.636 + + 27 NaN NaN 146974.1 NaN 9557 3035 12589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12595 57.939 NaN 203630 35 0 10671 0.261 + 31666 VYKAFVMETF 10 61 625.8098371210849 1249.6051213089697 2 625.811767578125 MULTI HCD FTMS 0 0 0 12589 38212.62890625 0.16455190439119835 15 -0.38702392578125 6 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 53.40400417844725 0.06540992187319636 2 V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 5 5 35.974 0 0 2.8788 0 0 608.3363253419196 0 608.3363253419196 0 8.064250275506875 0 0 0 0.8807196863200843 0 0 0 + V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 2.8788 + + 480 NaN NaN 119909.4 NaN 9558 3035 12589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12597 57.944 NaN 4294000 35 0 833340 0.327 + 12656 KWFFQKLRF 9 112 433.9167819209131 1298.7285163629392 3 433.9169616699219 MULTI HCD FTMS 0 0 0 12596 2098102 0.3329851020217228 7 -0.17729949951171875 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 149.91393105778798 8.917243180786556E-06 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 104.44 0 0 8.0417 8.0417 89.489 0 0 0 16.478174818886373 4.771212547196626 4.771212547196626 4.771212547196626 0 1.9604093769761874 0 0 2.2262809413564644 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 8.0417;7.6743;7.5408;7.3615;7.3327;7.1734;6.9653;6.8606;6.8318;6.7262 +;-;-;-;-;-;-;-;-;- + 2776 + NaN NaN 571219.8 NaN 9559 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12598 57.949 NaN 1009100 35 0 50542 0.261 + 22743 QYESKVFYL 9 111 588.8005820977656 1175.5866112623312 2 588.801025390625 MULTI HCD FTMS 0 0 0 12596 467972.15625 0.20617997642006647 6 -0.16437530517578125 2 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 103.35351024395868 0.004027461563756449 2 PVKSEC(Carbamidomethyl (C)){I|L} 7 7 45.713 0 0 3.8885 0 0 344.1726246564469 0 344.1726246564469 0 6.1846908286401785 0 0 0 1.0189301784845295 0 0.48965182871044377 0.5 PVKSEC(Carbamidomethyl (C)){I|L} 3.8885 - 3750 NaN NaN 252281.6 NaN 9560 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12599 57.952 NaN 240800 35 0 55234 0.262 + -1 PNRMCVSI 8 40 496.7343526402215 991.454152347243 2 496.73419189453125 MULTI HCD FTMS 0 0 0 12596 152869.71875 0.9606843246624257 4 -0.11133575439453125 3 Carbamidomethyl (C),Oxidation (M) _PNRM(Oxidation (M))C(Carbamidomethyl (C))VSI_ REV__ENST00000256646.6_1_1:120454802-120454955:-|nuORF 21.74664581756881 0.4337896562907935 2 VS{I|L} 3 -1 40.445 0 0 4.0794 0 0 674.2572581852061 0 674.2572581852061 0 40.44531259372398 0 0 0 1 0 0.4247425010840047 0 VS{I|L} 4.0794 + + 8 NaN NaN 137485 NaN 9561 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12600 57.956 NaN 338390 35 0 20016 0.261 + 1895 CYSFLFVSF 9 79 556.7592708435498 1111.5039887538994 2 556.7592163085938 MULTI HCD FTMS 0 0 0 12596 91637.15625 0.6747000232271255 -1 0.022830963134765625 4 Unmodified _CYSFLFVSF_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|310|2|anti-sense 25.399314129420986 0.14091189997036632 2 [DP]SAK{I|L}{M(Oxidation (M))|F}[MT]C 10 7 + 82.374 0 0 7.411 7.411 87.937 0 0 0 7.2184874961635614 3.521825181113627 3.521825181113627 3.521825181113627 0 2.305462187404089 2 1 0.4247425010840047 [DP]SAK{I|L}{M(Oxidation (M))|F}[MT]C;[DP]SAK{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F};[PS]DAK{I|L}{M(Oxidation (M))|F}[MT]C;[PS]DAK{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F};[DP]TGK{I|L}{M(Oxidation (M))|F}[MT]C;[DP]TGK{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F};[PS]EGK{I|L}{M(Oxidation (M))|F}[MT]C;[PS]EGK{I|L}{M(Oxidation (M))|F}{[MG]|[TS]}{M(Oxidation (M))|F} 7.411;7.0942;6.7616;6.4447;5.9502;5.6334;5.3008;4.9839 -;-;-;-;-;-;-;- 789 NaN NaN 152710.6 NaN 9562 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12601 57.959 NaN 277120 35 0 58175 0.263 + 5324 FFLHHVPPRL 10 48 421.5786438626851 NaN 0 421.5702819824219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FFLHHVPPRL_ REV__ENSG00000170085|ENST00000429602|SIMC1;REV__ENST00000499314.6_1_5:177054553-177058526:-|nuORF;REV__nc|ENSG00000170085|Q8NDZ2|SIMC1 1.9063754702782614 0.33855269584400594 2 M 1 -1 4.6041 0 0 0.54736 0 0 575.0343320238198 132.0455721490844 707.0799041729042 0 0 0 0 0 0 0 0 0 M 0.54736 - 4 + NaN NaN 126137.1 NaN 9563 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12602 57.962 NaN 246140 35 0 29325 0.261 -1 0 46 466.540545165831 2327.666343496155 5 466.74127197265625 MULTI HCD FTMS 0 0 0 12596 67281.5703125 0.6924002996956653 9 -0.229736328125 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.62741 0 0 2162.587880827013 0 2162.587880827013 0 4.938331324631376 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.62741 - 25 + NaN NaN 120074.8 NaN 9564 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12603 57.966 NaN 265600 35 0 15271 0.261 -1 VWMRSPLSTF 10 65 620.3137874554357 1238.6130219776712 2 620.3131103515625 MULTI HCD FTMS 0 0 0 12596 68059.2734375 0.7552569005204428 -2 0.059055328369140625 7 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ ENST00000558985.5_1_15:60656692-60690187:-|nuORF;ENST00000559725.5_1_15:60656692-60682421:-|nuORF 28.233623360808718 0.24751404419789966 2 EST{M(Oxidation (M))|F} 4 -1 38.175 0 0 3.0821 0 0 756.3876820294937 0 756.3876820294937 0 25.855931671512877 0 0 0 0.9247425010840047 0 0 0 EST{M(Oxidation (M))|F} 3.0821 - 54 NaN NaN 133294.9 NaN 9565 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12604 57.969 NaN 327620 35 0 43155 0.261 + 29355 TYPKLFKKL 9 80 569.3553019843753 1136.6960510355505 2 569.3547973632812 MULTI HCD FTMS 0 0 0 12596 41949.15234375 0.8977251296558227 3 -0.08184051513671875 8 Unmodified _TYPKLFKKL_ REV__ENSG00000069849|ENST00000286371|ATP1B3;REV__ENST00000465172.5_1_3:141595540-141640837:+|nuORF;REV__nc|ENSG00000069849|P54709-2|ATP1B3 4.3292370932331545 0.3181982124262546 2 EV[EC]{[DA]|[EG]}V{[QN]|[E{I|L}]|[KN]} 9 -1 16.373 0 0 1.4404 0 0 131.27541382111957 0 131.27541382111957 0 9.38302467346006 0 0 0 0 0 0.5 0 EV[EC]{[DA]|[EG]}V{[QN]|[E{I|L}]|[KN]} 1.4404 - 116 + NaN NaN 139052.4 NaN 9566 3036 12596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12606 57.974 NaN 1619200 35 0 186980 0.327 + 24596 RYLPKGFLNQF 11 92 461.59085030108923 1381.7507215034677 3 461.5907287597656 MULTI HCD FTMS 0 0 0 12605 484166.78125 0.7463405396927184 3 -0.08181381225585938 1 Unmodified _RYLPKGFLNQF_ ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2 59.012897905743536 0.044407695078131824 2 {I|L}NQ{M(Oxidation (M))|F} 4 7 55.79 0 0 4.0376 0 0 861.4853213717681 0 861.4853213717681 0 32.80873585991175 0 0 0 1.5356668758921828 0 0 0.8494850021680094 + {I|L}NQ{M(Oxidation (M))|F} 4.0376 + + 585 NaN NaN 332148.6 NaN 9567 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12607 57.978 NaN 816560 35 0 122970 0.261 -1 0 86 566.7740010513621 1131.5334491695241 2 566.7747802734375 MULTI HCD FTMS 0 0 0 12605 283017.71875 0.006067619292217717 72 -1.8799705505371094 2 NaN NaN 2 P{M(Oxidation (M))|F}STSVSW 8 -1 67.351 0 0 5.9522 0 0 222.0979003645262 0 222.0979003645262 0 49.903310147520656 0 0 0 2.6861818737241734 0 0.7059771852360797 0 P{M(Oxidation (M))|F}STSVSW 5.9522 - 1724 + NaN NaN 213096.9 NaN 9568 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12608 57.982 NaN 677640 35 0 40116 0.261 + 33451 YGTSGGNWNI 10 85 534.7409369768214 1067.4673210204428 2 534.7413330078125 MULTI HCD FTMS 0 0 0 12605 238251.25 0.9972215544174826 -1 0.029521942138671875 3 Unmodified _YGTSGGNWNI_ REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 13.042465956692817 0.38911719078024076 2 WGPD{[DS]|[MA]|[CV]|TT}N{I|L} 8 -1 41.82 0 0 3.9177 0 0 165.07888991523595 0 165.07888991523595 0 30.138050198288013 0 0 0 1.3494850021680094 0 0 0.4247425010840047 WGPD{[DS]|[MA]|[CV]|TT}N{I|L} 3.9177 - 402 NaN NaN 186850.1 NaN 9569 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12609 57.985 NaN 328580 35 0 25792 0.261 + 18140 MPDFDVARI 9 69 540.2630798631416 1078.511606793083 2 540.2628784179688 MULTI HCD FTMS 0 0 0 12605 65682.65625 0.5984546090524785 2 -0.052318572998046875 4 Oxidation (M) _M(Oxidation (M))PDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 43.981846655682396 0.04706587046877104 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L} 9 0 + 67.145 0 0 6.2257 6.2257 93.032 0 0 0 47.68114684785509 9.889917747712644 9.889917747712644 37.417665879116626 0 1.7302046884880937 0 0 0 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DVAR{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}DVAR{I|L} 6.2257;2.7563 +;+ + 90 + NaN NaN 138696.9 NaN 9570 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12610 57.988 NaN 280200 35 0 28823 0.261 + 13136 KYLLHSLVF 9 66 560.3317002487544 1118.6488475643087 2 560.3314208984375 MULTI HCD FTMS 0 0 0 12605 47321.9296875 0.2741771684355325 5 -0.13485336303710938 5 Unmodified _KYLLHSLVF_ ENSG00000087008|ENST00000356406|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3 22.736283301280096 0.1639198954644489 2 [Y{I|L}]K{I|L}H{[TV]|[{I|L}S]}V{M(Oxidation (M))|F} 9 2 + 55.908 0 0 4.9978 4.9978 91.687 0 0 0 25.642492736872597 42.196144486951255 25.642492736872597 55.90751964955196 0 0.8494850021680094 2 0 0 [Y{I|L}]K{I|L}H{[TV]|[{I|L}S]}V{M(Oxidation (M))|F} 4.9978 - 69 NaN NaN 142790.6 NaN 9571 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12611 57.992 NaN 193270 35 0 26117 0.261 + 19145 NGKQLVLVF 9 67 509.3080836377121 1016.6016143422243 2 509.3082275390625 MULTI HCD FTMS 0 0 0 12605 66343.78125 1 0 0 6 Unmodified _NGKQLVLVF_ REV__ENST00000333681.4_1_18:60986166-60986492:-|nuORF;REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF 15.847184025352803 0.2234401846867398 2 V{I|L}V{M(Oxidation (M))|F} 4 -1 37.423 0 0 3.6812 0 0 540.30375868965 0 540.30375868965 0 30.43305028184122 0 0 0 1 0 0 0 V{I|L}V{M(Oxidation (M))|F} 3.6812 + + 57 NaN NaN 129221.1 NaN 9572 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12612 57.995 NaN 147380 35 0 5058 0.261 -1 0 35 628.0042274075945 NaN 0 628.2791137695312 PEAK HCD FTMS 0 0 0 12605 20686.970703125 1 0 0 7 NaN NaN 2 W 1 -1 3.0989 0 0 0.24713 0 0 461.63258703999514 603.2529390924436 1064.8855261324388 0 0 0 0 0 0 0 0 0 W 0.24713 - 1 + NaN NaN 118597.7 NaN 9573 3037 12605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12614 58 NaN 628440 35 0 146790 0.327 + 16146 LPTSNNRH 8 69 469.74407037179253 937.4735878103851 2 469.7439270019531 MULTI HCD FTMS 0 0 0 12613 334817.8125 0.7549518886110613 2 -0.05565643310546875 1 Unmodified _LPTSNNRH_ ENSG00000244607|ENST00000310232|CCDC13 26.88365393820708 0.39599352634412927 2 {I|L}PTD 4 5 66.23 0 0 7.0647 0 0 0 508.23872168766053 508.23872168766053 57.250547101681875 0 0 0 0 0.8807196863200843 1.6989700043360187 0.8494850021680094 0 {I|L}PTD 7.0647 - 56 + NaN NaN 180519.4 NaN 9574 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12615 58.004 NaN 1446300 35 0 374710 0.261 + 4020 ERTATTTT 8 88 440.72127755277285 NaN 0 440.7213134765625 PEAK HCD FTMS 0 0 0 12613 676183.3125 0.39069167262933474 -2 0.0556793212890625 2 Unmodified _ERTATTTT_ REV__ENSG00000104853|ENST00000337392|CLPTM1;REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF;REV__nc|ENSG00000104853|O96005-3|CLPTM1;REV__nc|ENSG00000104853|O96005-4|CLPTM1 13.50788311687929 0.38822285293237185 2 {I|L}YN 3 -1 16.911 0 0 1.923 0 0 303.1582819824425 183.05642114810783 486.21470313055033 0 0 0 0 0 0.5 0 0 0.5484550065040282 {I|L}YN 1.923 - 292 + NaN NaN 305913.7 NaN 9575 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12616 58.008 NaN 427000 35 0 23815 0.261 + -1 VIYVSCFGLQ 10 81 593.3034827680268 NaN 0 593.2828979492188 PEAK HCD FTMS 0 0 0 12613 28640.1796875 0.6181083785421335 1 -0.02616119384765625 3 Carbamidomethyl (C) _VIYVSC(Carbamidomethyl (C))FGLQ_ REV__ENSG00000180773|ENST00000326402|SLC36A4;REV__ENST00000524875.1_1_11:92903372-92916023:-|nuORF;REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4 10.823927491677226 0.33092050725491123 2 YE{I|L}D{M(Oxidation (M))|F}S 6 -1 28.378 0 0 2.3956 0 0 128.13776704254389 299.1144198053344 427.2521868478783 0 0 0 0 0 0 0 0.3252574989159953 0 YE{I|L}D{M(Oxidation (M))|F}S 2.3956 - 222 + NaN NaN 147205.3 NaN 9576 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12617 58.011 NaN 263720 35 0 23709 0.261 + 27920 TELERAFGYY 10 55 624.7986592930879 1247.5827656529757 2 624.7987060546875 MULTI HCD FTMS 0 0 0 12613 116649.5625 0.8337125979006793 1 -0.02616119384765625 4 Unmodified _TELERAFGYY_ ENSG00000112081|ENST00000373715|SRSF3;nc|ENSG00000112081|P84103-2|SRSF3 49.52724829834842 0.07950882623896251 2 {[ET]|[MV]}NG{M(Oxidation (M))|F}QVKYY 10 6 + 73.505 0 0 5.8918 5.8918 87.683 0 0 0 8.15044357464103 48.09894379144197 8.15044357464103 9.164539485499262 0 2.4291746928241125 0 0.3807196863200844 0 {[ET]|[MV]}NG{M(Oxidation (M))|F}QVKYY;{[ET]|[MV]}GGG{M(Oxidation (M))|F}QVKYY;{[ET]|[MV]}NKVQ{M(Oxidation (M))|F}GYY;{[ET]|[MV]}GGKVQ{M(Oxidation (M))|F}GYY;{[ET]|[MV]}{[RE]|[WV]}[{I|L}A]{M(Oxidation (M))|F}GYY;{[ET]|[MV]}{[RE]|[WV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QYY;{[ET]|[MV]}{[RE]|[WV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KYY;{[ET]|[MV]}{[RE]|[WV]}[{I|L}A]{M(Oxidation (M))|F}GN[DP];{[ET]|[MV]}{[RE]|[WV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KN[DP];{[ET]|[MV]}{[RE]|[WV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QN[DP] 5.8918;5.1572;5.1188;4.3843;3.9707;2.9507;2.9507;2.0441;1.0206;1.0206 -;-;-;-;-;-;-;-;-;- 239 NaN NaN 120783.7 NaN 9577 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12618 58.015 NaN 419130 35 0 62182 0.261 + 35074 YTTVTFFTSA 10 86 569.2766265100344 1136.5387000868686 2 569.2655029296875 MULTI HCD FTMS 0 0 0 12613 19692.787109375 0.1398324164564751 9 -0.23319244384765625 5 Unmodified _YTTVTFFTSA_ REV__ENSG00000180340|ENST00000315323|FZD2 9.38312468134398 0.42334543440173333 2 VE{I|L} 3 -1 26.198 0 0 2.3051 0 0 777.309411521227 0 777.309411521227 0 0.37880766891236206 0 0 0 0 0 0 0 VE{I|L} 2.3051 - 334 NaN NaN 154961.5 NaN 9578 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12619 58.018 NaN 311660 35 0 30048 0.261 + 16254 LQDSVDFSL 9 65 512.2526096987231 1022.4906664642461 2 512.2523803710938 MULTI HCD FTMS 0 0 0 12613 87696.046875 0.4483819439201715 -7 0.1898040771484375 6 Unmodified _LQDSVDFSL_ ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF 25.399314129420986 0.14091189997036632 2 {I|L}EED 4 7 29.68 0 0 2.9028 0 0 241.14425844798126 292.1273664462202 533.2716248942015 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 {I|L}EED 2.9028 - 168 + NaN NaN 138574.9 NaN 9579 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12620 58.021 NaN 66345 35 0 4825.8 0.261 + -1 MLTRGLPC 8 50 453.73128677039784 NaN 0 453.8799743652344 PEAK HCD FTMS 0 0 0 12613 10112.7763671875 0.8653240104973823 5 -0.12162017822265625 7 Oxidation (M) _M(Oxidation (M))LTRGLPC_ REV__ENST00000474643.5_1_6:31749704-31749895:-|nuORF 6.354104778181461 0.38822285293237185 2 T 1 -1 5.4846 0 0 0.60573 0 0 364.7092033241957 436.6782320611938 801.3874353853895 0 0 0 0 0 0 0 0 0 T 0.60573 + + 1 + NaN NaN 92549.6 NaN 9580 3038 12613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12622 58.026 NaN 1367000 35 0 535580 0.327 + 16100 LPTDSATVL 9 57 458.7530774057947 915.4916018783895 2 458.7530517578125 MULTI HCD FTMS 0 0 0 12621 1319942.75 0.7603645933543557 2 -0.05237579345703125 1 Unmodified _LPTDSATVL_ ENSG00000196878|ENST00000356082|LAMB3 68.08070601005525 0.009709267492204555 2 {[TV]|[{I|L}S]}[EP]SATV{I|L} 9 3 + 81.634 0 0 8.9169 8.9169 98.483 0 0 0 7.203774648612793 67.45235939505172 7.203774648612793 81.63357177514193 0 2 1.5228787452803376 1.2302046884880937 0 {[TV]|[{I|L}S]}[EP]SATV{I|L} 8.9169 - 85 NaN NaN 295938.7 NaN 9581 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12623 58.031 NaN 1304400 35 0 376230 0.261 + 22118 QIIEEDAAL 9 74 501.26118857196053 1000.5078242107211 2 501.26116943359375 MULTI HCD FTMS 0 0 0 12621 857649 0.6894965610047696 -7 0.18320465087890625 2 Unmodified _QIIEEDAAL_ ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF 86.33184430468982 0.004622086694044132 2 [Q{I|L}]{I|L}EEDAA{I|L} 9 0 + 92.928 0 0 9.2881 9.2881 96.515 0 0 0 14.154441319878458 85.93855808645804 14.154441319878458 20.057809497117844 0 2.6307196863200843 0 0.8494850021680094 1.0501648626366045 + + [Q{I|L}]{I|L}EEDAA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}EDAA{I|L} 9.2881;7.2833 +;- + 176 NaN NaN 288811.4 NaN 9582 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12624 58.034 NaN 366450 35 0 36140 0.261 + 17052 LYKFSADEF 9 84 560.2713412570143 1118.5281295808286 2 560.271240234375 MULTI HCD FTMS 0 0 0 12621 125328.234375 0.6418568909250749 -1 0.02616119384765625 3 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 103.41943736471063 0.004016698775839292 2 {I|L}YK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F} 9 0 + 108.6 0 0 9.7089 9.7089 97.993 0 0 0 87.08703930585612 16.478174818886373 16.478174818886373 35.45732670896497 0 2.6237125054200234 2 1.5699601741485107 0.3807196863200844 + + {I|L}YK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]K{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[YK]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A[KS][Y{I|L}]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A[HQ]{I|L}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{I|L} 9.7089;6.5389;3.7199;1.3485;1.2777;0.5457 +;+;-;-;-;- + 215 + NaN NaN 157347.9 NaN 9583 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12625 58.037 NaN 310140 35 0 20854 0.261 -1 0 73 582.769221728906 1163.523890524612 2 582.7697143554688 MULTI HCD FTMS 0 0 0 12621 99678.7578125 0.010310904094104723 74 -1.9390792846679688 4 NaN NaN 2 MSW 3 -1 32.677 0 0 2.8085 0 0 741.3465443341812 0 741.3465443341812 0 5.787953282225473 0 0 0 0.9247425010840047 0 0.3252574989159953 0 MSW 2.8085 - 162 NaN NaN 155033.6 NaN 9584 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12626 58.041 NaN 278650 35 0 28458 0.261 + 7261 FTASIAPQLL 10 73 530.8052699513499 1059.5959869694998 2 530.7930297851562 MULTI HCD FTMS 0 0 0 12621 21796 0.2603195415355569 9 -0.24653244018554688 5 Unmodified _FTASIAPQLL_ nc|ENSG00000290684|A6NFC9|OR2W5P 12.240655878213236 0.39661705172222156 2 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.4614 0 0 894.5170055015295 0 894.5170055015295 0 1.9808814495672635 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.4614 + + 104 + NaN NaN 138606.9 NaN 9585 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12627 58.044 NaN 682920 35 0 208250 0.261 + 1705 CGSSKYHL 8 79 447.7108728279699 893.4071927227399 2 447.7109680175781 MULTI HCD FTMS 0 0 0 12621 157026.859375 0.5054876875348884 -7 0.18320465087890625 6 Unmodified _CGSSKYHL_ ENST00000471538.1_1_1:16200459-16203174:+|nuORF 21.74664581756881 0.4337896562907935 2 ER 2 8 39.578 0 0 4.43 0 0 0 605.2371709910132 605.2371709910132 7.098557027813541 0 0 0 0 0.7059771852360797 2 0 0 ER 4.43 - 90 + NaN NaN 193991 NaN 9586 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12628 58.047 NaN 232460 35 0 15210 0.261 -1 IETHGMAVSW 10 50 573.7656391822765 1145.5167254313528 2 573.7646484375 MULTI HCD FTMS 0 0 0 12621 46386.77734375 0.007120159909080032 73 -1.8996124267578125 7 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 9.38312468134398 0.42334543440173333 2 SVSW 4 -1 38.047 0 0 3.3214 0 0 668.2956083432654 0 668.2956083432654 0 32.361081649832784 0 0 0 1 0 0 0 SVSW 3.3214 - 33 + NaN NaN 132074 NaN 9587 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12629 58.051 NaN 228160 35 0 29646 0.262 + 18833 NADSSVQLL 9 62 473.7457320738319 945.4769112144638 2 473.7455139160156 MULTI HCD FTMS 0 0 0 12621 137779.171875 0.9525633988683359 -1 0.02616119384765625 8 Unmodified _NADSSVQLL_ ENSG00000099624|ENST00000215375|ATP5F1D;ENST00000590265.5_1_19:1242319-1244433:+|nuORF 49.55428908609986 0.03219431099695407 2 Q{I|L}{I|L} 3 6 40.445 0 0 4.2778 0 0 573.2386595743671 0 573.2386595743671 0 34.872118693881546 0 0 0 1 0 0 0.4247425010840047 + Q{I|L}{I|L} 4.2778 + + 18 NaN NaN 137319.6 NaN 9588 3039 12621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12631 58.056 NaN 1193200 35 0 148120 0.327 + 31483 VYEYVVERF 9 76 602.3060934816108 1202.5976340300215 2 602.3060913085938 MULTI HCD FTMS 0 0 0 12630 561105.625 0.589629853613325 -7 0.19322586059570312 1 Unmodified _VYEYVVERF_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 125.0377797344192 0.0009059125702818869 2 [YV]EYVVER{M(Oxidation (M))|F} 9 0 + 118.27 0 0 9.8344 9.8344 90.786 0 0 0 3.0546218740408904 3.0546218740408904 3.0546218740408904 3.0546218740408904 0 2.9247425010840047 1.6989700043360187 1.7416440611282624 0 + + [YV]EYVVER{M(Oxidation (M))|F};VYEYVVER{M(Oxidation (M))|F};[YV]EVYVER{M(Oxidation (M))|F};[YE]VYVVER{M(Oxidation (M))|F};[YV]EYVVRE{M(Oxidation (M))|F};[YE]VVYVER{M(Oxidation (M))|F};[YV]EVYVRE{M(Oxidation (M))|F};[YE]YVVVER{M(Oxidation (M))|F};[YE]VYVVRE{M(Oxidation (M))|F};[YE]VVYVRE{M(Oxidation (M))|F} 9.8344;9.5804;9.2309;8.691;8.5468;8.0875;7.9433;7.4214;7.4034;6.7999 +;+;-;-;-;-;-;-;-;- + 1427 NaN NaN 274638.8 NaN 9589 3040 12630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12632 58.06 NaN 468550 35 0 87220 0.263 + 1608 AYVPGFAHI 9 52 487.7585357133048 973.5025184934096 2 487.7585144042969 MULTI HCD FTMS 0 0 0 12630 223225.109375 0.7598502745084357 2 -0.05303955078125 2 Unmodified _AYVPGFAHI_ ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF 14.581692164780916 0.23437375358055648 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3 6 32.932 0 0 3.3828 0 0 0 637.3101863897164 637.3101863897164 28.327731244245342 0 0 0 0 0.8494850021680094 1.3979400086720375 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V 3.3828 + + 24 + NaN NaN 153886.2 NaN 9590 3040 12630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12633 58.064 NaN 17547 35 0 3519.7 0.261 + 33079 YDPFGQGW 8 16 485.2086963606127 968.4028397880254 2 485.20867919921875 MULTI HCD FTMS 0 0 0 12630 174333.46875 0.6233293336150529 -1 0.0294952392578125 3 Unmodified _YDPFGQGW_ REV__ENSG00000204852|ENST00000397659|TCTN1;REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF;REV__ENST00000460357.1_1_12:111082772-111083018:+|nuORF;REV__ENST00000463313.1_1_12:111078308-111085046:+|nuORF;REV__ENST00000495659.6_1_12:111052207-111085694:+|nuORF;REV__nc|ENSG00000204852|Q2MV58-3|TCTN1;REV__nc|ENSG00000204852|Q2MV58-4|TCTN1;REV__nc|ENSG00000204852|Q2MV58-5|TCTN1;REV__nc|ENSG00000204852|Q2MV58|TCTN1 0 0.5419923896992614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 83212.1 NaN 9591 3040 12630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12634 58.067 NaN 42128 35 0 19436 0.261 + 22434 QQAKEMNY 8 19 506.2337695405634 NaN 0 506.2337646484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _QQAKEMNY_ REV__CLPX|p.V347M|1|0.33|ENSG00000166855|chr15:65157764-65157764|C/T|missense_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93876.5 NaN 9592 3040 12630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12635 58.07 NaN 29866 35 0 5723.9 0.261 -1 ICAQRGCCW 9 28 598.2435232613002 1194.4724935894003 2 598.2435913085938 MULTI HCD FTMS 0 0 0 12630 216000.609375 0.6648519395644367 24 -0.6683197021484375 5 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))ICAQRGC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ ENSG00000090402|ENST00000264382|SI;SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.P97L|1|0.12|ENSG00000090402|chr3:165069161-165069161|G/A|missense_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82750.9 NaN 9593 3040 12630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12636 58.074 NaN 30415 35 0 3943.2 0.261 + 14358 LECDPGTHKF 10 36 573.7656391822765 1145.5167254313528 2 573.7631225585938 MULTI HCD FTMS 0 0 0 12630 50498.19140625 0.007751243318054651 74 -1.9258232116699219 6 Unmodified _LECDPGTHKF_ REV__ENST00000427240.1_1_1:39997676-40011451:-|nuORF 1.4819007175156935 0.4674597685733628 2 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.30509 0 0 685.3518827573279 310.07236658267817 995.4242493400061 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.30509 + + 4 + NaN NaN 91871.6 NaN 9594 3040 12630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12638 58.079 NaN 17107 35 0 3632.4 0.327 + 33081 YDPSTWRGA 9 16 526.7434424480238 1051.4723319628474 2 526.7434692382812 MULTI HCD FTMS 0 0 0 12637 1751.255859375 0.0011442804484780263 3 -0.07254791259765625 1 Unmodified _YDPSTWRGA_ REV__chr5:167755192-167875986|342|11.18|0.1|6.82|+|ENST00000519204|TENM2,TENM2;REV__ENSG00000145934|ENST00000518659|TENM2;REV__nc|ENSG00000145934|Q9NT68-2|TENM2 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91319.7 NaN 9595 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12639 58.084 NaN 25052 35 0 3580.5 0.262 + 12657 KWFFQKLRF 9 23 433.9167819209131 1298.7285163629392 3 433.9168701171875 MULTI HCD FTMS 0 0 0 12637 8197.71484375 0.001301041090276395 12 -0.31201934814453125 2 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 0.235843874597859 0.3492291811235561 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95826.2 NaN 9596 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12640 58.087 NaN 28107 35 0 4958.7 0.261 + 33688 YKQLVQYY 8 21 552.7899741769265 1103.565395420653 2 552.790283203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YKQLVQYY_ REV__ENSG00000178202|ENST00000323468|POGLUT3;REV__nc|ENSG00000178202|Q7Z4H8-2|POGLUT3 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100479.8 NaN 9597 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12641 58.091 NaN 22060 35 0 3727.3 0.261 + 32209 VYTHLQIL 8 14 493.78719953157434 985.5598461299487 2 493.78729248046875 MULTI HCD FTMS 0 0 0 12637 1437.5078125 0.0033038364586857856 3 -0.07254791259765625 4 Unmodified _VYTHLQIL_ REV__ENSG00000103148|ENST00000611875|NPRL3 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 88970.1 NaN 9598 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12642 58.094 NaN 29217 35 0 5938 0.261 + -1 YKHFNLCC 8 19 542.7384592696552 1083.4623656061103 2 542.7387084960938 MULTI HCD FTMS 0 0 0 12637 1772.370361328125 0.004423150143591321 -3 0.0785369873046875 5 Carbamidomethyl (C) _YKHFNLC(Carbamidomethyl (C))C_ REV__ENST00000526421.5_1_11:102188276-102190656:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89691.3 NaN 9599 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12643 58.097 NaN 24202 35 0 4143.6 0.261 -1 WEEIIYNMV 9 27 606.7836750989703 1211.5527972647405 2 607.2852172851562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WEEIIYNM(Oxidation (M))V_ ENSG00000260903|ENST00000562532|XKR7 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91750.9 NaN 9600 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12644 58.1 NaN 48327 35 0 5719.2 0.262 + 27728 TASPLEHIL 9 28 490.7742972142139 979.5340414952278 2 490.7742919921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TASPLEHIL_ ENSG00000101191|ENST00000395343|DIDO1 1.844237919475145 0.33703635659052655 2 S[PG] 3 7 10.458 0 0 1.0676 0 0 720.4081288068375 0 720.4081288068375 0 10.45757490560675 0 0 0 0 0 0 0 S[PG] 1.0676 - 1 NaN NaN 96034.7 NaN 9601 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12645 58.104 NaN 29609 35 0 2586.6 0.261 -1 LVMFALMMCD 10 28 631.7683715820312 NaN 0 631.7683715820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C),2 Oxidation (M) _LVM(Oxidation (M))FALM(Oxidation (M))MC(Carbamidomethyl (C))D_ ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1 1.6526216038709556 0.33876987398426067 2 Y 1 -1 2.4743 0 0 0.19613 0 0 652.3665596662125 443.0659578912719 1095.4325175574845 0 0 0 0 0 0 0 0 0 Y 0.19613 - 1 + NaN NaN 107102.4 NaN 9602 3041 12637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12647 58.109 NaN 56998 35 0 5854.8 0.327 + 30300 VKLLKLVKKV 10 29 584.430419921875 NaN 0 584.430419921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VKLLKLVKKV_ ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91145.6 NaN 9603 3042 12646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12648 58.113 NaN 49918 35 0 4812.6 0.261 + 10310 ILIKLLTKIK 10 27 591.9309692382812 NaN 0 591.9309692382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _ILIKLLTKIK_ REV__tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1 0 0.34018428902965525 2 M 1 -1 1.5938 0 0 0.13486 0 0 591.00071962715 456.78132044010005 1047.7820400672501 0 0 0 0 0 0 0 0 0 M 0.13486 - 2 + NaN NaN 95153.2 NaN 9604 3042 12646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12649 58.117 NaN 82182 35 0 6391.9 0.261 + 11839 KERKELCLM 9 27 575.3107696715552 1148.6069864099104 2 575.4434204101562 MULTI HCD FTMS 0 0 0 12646 18924.73828125 0.13482570375382125 -4 0.10869598388671875 3 Unmodified _KERKELCLM_ REV__ENST00000534297.2_2_11:121986884-121986950:-|nuORF 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97084.4 NaN 9605 3042 12646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12651 58.122 NaN 335300 35 0 49680 0.327 + 20002 NYIEKVVAI 9 57 524.8055964868107 NaN 0 524.805419921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NYIEKVVAI_ ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 51.629811660486645 0.04111961458024335 2 AV 2 8 17.959 0 0 1.7143 0 0 131.09516568496753 743.373093301095 874.4682589860624 0 0 0 0 0 0.8494850021680094 0 0 0 AV 1.7143 - 24 + NaN NaN 154059.5 NaN 9606 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12652 58.126 NaN 469170 35 0 71081 0.261 -1 DMMSICPEL 9 73 527.7168874510668 1053.4192219689335 2 527.7169799804688 MULTI HCD FTMS 0 0 0 12650 28367.935546875 0.14772272366343345 -2 0.04308319091796875 2 Oxidation (M) _DMM(Oxidation (M))SICPEL_ CCNB3|p.E541D|1|0.73|ENSG00000147082|chrX:50309792-50309792|G/T|missense_variant 7.910154910731844 0.2910521888787154 2 NN 2 -1 19.949 0 0 1.8937 0 0 807.3385850311699 0 807.3385850311699 0 2.156818820794939 0 0 0 0 0 0 0.3494850021680094 NN 1.8937 - 101 NaN NaN 158112.6 NaN 9607 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12653 58.13 NaN 128490 35 0 14363 0.261 + 12741 KYCTVVAYPT 10 52 572.789101950956 1143.563650968712 2 572.7568359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KYCTVVAYPT_ ENSG00000185658|ENST00000342449|BRWD1;ENST00000473813.1_1_21:40582792-40590527:-|nuORF;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 3.2813086475875832 0.45793521633868084 2 EG 2 10 7.9588 0 0 0.69596 0 0 105.11325035618945 849.3894747369749 954.5027250931644 0 0 0 0 0 0 0 0 0 EG 0.69596 - 10 + NaN NaN 114297.3 NaN 9608 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12654 58.133 NaN 155940 35 0 9915.6 0.261 -1 HPCTNGGTCI 10 55 558.7331050721963 1115.4516572111925 2 558.7333374023438 MULTI HCD FTMS 0 0 0 12650 43413.12890625 0.4774993465069961 1 -0.0294647216796875 4 2 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))TNGGTC(Carbamidomethyl (C))I_ ENSG00000184916|ENST00000331782|JAG2;nc|ENSG00000184916|Q9Y219-2|JAG2 2.9952420565917617 0.4594494122822477 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2098 0 0 950.372629966855 0 950.372629966855 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2098 - 20 + NaN NaN 102685.1 NaN 9609 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12655 58.136 NaN 488980 35 0 28550 0.261 + -1 LCCRPAPSMA 10 97 589.7592186871062 1177.5038844410124 2 589.7587280273438 MULTI HCD FTMS 0 0 0 12650 19436.08984375 0.3050723241250929 -1 0.0129241943359375 5 2 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))C(Carbamidomethyl (C))RPAPSM(Oxidation (M))A_ REV__ENST00000593532.5_1_19:50879767-50880852:+|nuORF;REV__ENST00000597130.5_3_19:50879767-50881034:+|nuORF;REV__ENST00000597790.5_1_19:50879837-50880852:+|nuORF 13.90604991867851 0.3810395177745597 2 EQV[WD]Q{[QN]|[E{I|L}]|[KN]} 8 -1 27.285 0 0 2.3172 0 0 132.01826734216326 0 132.01826734216326 0 -7.786596949921218 -7.786596949921218 0 0 0 0 1.1549471895720984 0.6861818737241735 EQV[WD]Q{[QN]|[E{I|L}]|[KN]} 2.3172 - 1539 + NaN NaN 158830.2 NaN 9610 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12656 58.14 NaN 239390 35 0 25479 0.261 + 17699 MASDVWHTAL 10 67 565.7670983525405 NaN 0 565.76708984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MASDVWHTAL_ REV__nc|ENSG00000044115|P35221-2|CTNNA1 25.399314129420986 0.2368981700431367 2 CSV 3 -1 22.664 0 0 2.0065 0 0 99.06038197383812 738.3245943658811 837.3849763397193 0 0 0 0 0 1 0 0.4247425010840047 0 CSV 2.0065 - 91 + NaN NaN 126407.9 NaN 9611 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12657 58.143 NaN 137560 35 0 13448 0.261 + 19146 NGKQLVLVF 9 47 509.3080836377121 1016.6016143422243 2 509.3085021972656 MULTI HCD FTMS 0 0 0 12650 7816.68310546875 0.11782088627136775 5 -0.15107345581054688 7 Unmodified _NGKQLVLVF_ REV__ENST00000333681.4_1_18:60986166-60986492:-|nuORF;REV__ENST00000398117.1_1_18:60986405-60986492:-|nuORF 11.640296217721598 0.25978676193971967 2 {I|L}V{M(Oxidation (M))|F} 3 -1 35.445 0 0 3.4866 0 0 639.370409080275 0 639.370409080275 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 {I|L}V{M(Oxidation (M))|F} 3.4866 + + 14 NaN NaN 110455.4 NaN 9612 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12658 58.146 NaN 129600 35 0 6524.8 0.261 -1 VYKAFVMETF 10 56 625.809990822627 1249.605428712054 2 625.8908081054688 MULTI HCD FTMS 0 0 0 12650 15713.7119140625 0.34207039776732606 -5 0.12162017822265625 8 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 27.223235318498237 0.2564750587861972 2 V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 5 -1 33.901 0 0 2.7129 0 0 608.3326887456051 0 608.3326887456051 0 17.703037561203843 0 0 0 1 0 0 0 V{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 2.7129 + + 48 NaN NaN 108945.9 NaN 9613 3043 12650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12660 58.151 NaN 472690 35 0 31088 0.327 + 33452 YGTSGGNWNI 10 81 534.7409369768214 1067.4673210204428 2 534.7407836914062 MULTI HCD FTMS 0 0 0 12659 194303.328125 0.8132736634175168 6 -0.15742874145507812 1 Unmodified _YGTSGGNWNI_ REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 18.1463463914782 0.3413772152514074 2 [DV]HGPD{[DS]|[MA]|[CV]|TT}N 9 -1 47.321 0 0 4.433 0 0 0 128.07827317743968 128.07827317743968 31.836609336345774 0 0 0 0 1.75 1.6989700043360187 0.3054621874040891 0.4247425010840047 [DV]HGPD{[DS]|[MA]|[CV]|TT}N 4.433 - 533 NaN NaN 175829.4 NaN 9614 3044 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12661 58.156 NaN 408240 35 0 79733 0.261 + -1 LYYNTPTRM 9 54 587.7822177876833 NaN 0 587.7984619140625 PEAK HCD FTMS 0 0 0 12659 20082.798828125 0.5157215326525721 -3 0.07254791259765625 2 Oxidation (M) _LYYNTPTRM(Oxidation (M))_ REV__ENSG00000171596|ENST00000305141|NMUR1 18.13498045792455 0.19991664011725976 2 T{I|L}YYQY{I|L} 7 -1 43.219 0 0 3.6828 0 0 64.00089701182681 162.05581079654533 226.05670780837215 0 0 0 0 0 0 0 0 0.4247425010840047 T{I|L}YYQY{I|L} 3.6828 - 140 + NaN NaN 149561.5 NaN 9615 3044 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12662 58.159 NaN 215060 35 0 25925 0.261 -1 EYMEHVYLI 9 51 606.7836750989703 1211.5527972647405 2 607.2850341796875 MULTI HCD FTMS 0 0 0 12659 113200.890625 0.21065576325418722 -11 0.2886543273925781 3 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 2 VVT 3 -1 23.06 0 0 1.9033 0 0 164.04197729067147 745.3026554508484 909.34463274152 0 0 0 0 0 0 0 0.6861818737241735 0 VVT 1.9033 - 61 + NaN NaN 118209 NaN 9616 3044 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12663 58.162 NaN 257910 35 0 57174 0.263 + 16147 LPTSNNRH 8 58 469.74407037179253 937.4735878103851 2 469.7438049316406 MULTI HCD FTMS 0 0 0 12659 153669.8125 0.3464968434717991 7 -0.17707443237304688 4 Unmodified _LPTSNNRH_ ENSG00000244607|ENST00000310232|CCDC13 21.74664581756881 0.4337896562907935 2 {I|L}PTD 4 5 62.423 0 0 6.6586 0 0 0 508.2391451471313 508.2391451471313 55.43305028184122 0 0 0 0 0.5 1.6989700043360187 0.8494850021680094 0 {I|L}PTD 6.6586 - 18 + NaN NaN 137631.1 NaN 9617 3044 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12664 58.166 NaN 251040 35 0 28377 0.261 -1 LPAAGVGDMVM 11 50 538.7592169785191 1075.5038810238382 2 538.7454833984375 MULTI HCD FTMS 0 0 0 12659 59919.50390625 0.2961183144108688 -4 0.095428466796875 5 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 29.081581746732265 0.20726811077697932 2 V{M(Oxidation (M))|F} 2 -1 29.222 0 0 2.717 0 0 811.3901844709 0 811.3901844709 0 19.13303128443836 0 0 0 0.8252574989159953 0 0 0 V{M(Oxidation (M))|F} 2.717 + + 12 NaN NaN 135582.1 NaN 9618 3044 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12665 58.169 NaN 114740 35 0 6426.3 0.261 + 2085 DEVWFVCQLT 10 53 620.291688127685 1238.56882332217 2 620.103759765625 MULTI HCD FTMS 0 0 0 12659 40849.1640625 0.9289362052158149 -3 0.07254791259765625 6 Unmodified _DEVWFVCQLT_ REV__ENSG00000205336|ENST00000562631|ADGRG1;REV__ENST00000564907.5_1_16:57684180-57697491:+|nuORF;REV__ENST00000565539.5_1_16:57684180-57697491:+|nuORF;REV__nc|ENSG00000205336|Q9Y653-3|ADGRG1;REV__nc|ENSG00000205336|Q9Y653-4|ADGRG1;REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1;REV__nc|ENSG00000205336|Q9Y653|ADGRG1 5.296884461304476 0.4472664531305844 2 T{I|L} 2 -1 25.969 0 0 2.0967 0 0 1006.425780457024 0 1006.425780457024 0 15.511525224473813 0 0 0 0.5 0 0 0 T{I|L} 2.0967 - 17 NaN NaN 108615.2 NaN 9619 3044 12659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12667 58.174 NaN 2091600 35 0 510730 0.327 + 4021 ERTATTTT 8 97 440.72126228054947 NaN 0 440.7213439941406 PEAK HCD FTMS 0 0 0 12666 1110167.875 0.6028493492790931 -1 0.02297210693359375 1 Unmodified _ERTATTTT_ REV__ENSG00000104853|ENST00000337392|CLPTM1;REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF;REV__nc|ENSG00000104853|O96005-3|CLPTM1;REV__nc|ENSG00000104853|O96005-4|CLPTM1 13.50788311687929 0.38822285293237185 2 VQYV 4 -1 14.523 0 0 1.6514 0 0 204.08759184449895 183.05629907779533 387.1438909222943 0 0 0 0 0 1 0 0 0.2742275032520141 VQYV 1.6514 - 465 + NaN NaN 409100 NaN 9620 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12668 58.178 NaN 1308200 35 0 390260 0.261 + 22119 QIIEEDAAL 9 72 501.26118857196053 1000.5078242107211 2 501.2612609863281 MULTI HCD FTMS 0 0 0 12666 892216.4375 0.7172866351248319 -1 0.02297210693359375 2 Unmodified _QIIEEDAAL_ ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF 79.59630418116434 0.005983006570063981 2 [{I|L}A]G{I|L}EEDAA{I|L} 10 2 + 79.843 0 0 7.9803 7.9803 88.479 0 0 0 2.4472749489669354 16.53212513775344 2.4472749489669354 2.4472749489669354 0 2.548455006504028 1.2218487496163564 0.8494850021680094 0 [{I|L}A]G{I|L}EEDAA{I|L};[{I|L}V]AAEEDAA{I|L};[{I|L}A]{NN|[MP]|[D{I|L}]|[EV]}AEDAA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L}EDAA{I|L};[{I|L}V]{[CP]|[EA]}AEDAA{I|L} 7.9803;7.7356;7.1356;7.0388;6.7094 -;-;-;-;- 249 NaN NaN 297408.8 NaN 9621 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12669 58.182 NaN 584310 35 0 230300 0.261 + 16101 LPTDSATVL 9 55 458.7530774057947 915.4916018783895 2 458.7530517578125 MULTI HCD FTMS 0 0 0 12666 480729.625 0.2769285151394005 7 -0.19028854370117188 3 Unmodified _LPTDSATVL_ ENSG00000196878|ENST00000356082|LAMB3 68.08070601005525 0.009709267492204555 2 ATV{I|L} 4 5 59.24 0 0 6.4709 0 0 513.2410466086376 0 513.2410466086376 0 45.01857202580155 0 0 0 1.8807196863200843 0 0.8494850021680094 0 + ATV{I|L} 6.4709 + + 89 NaN NaN 177731.7 NaN 9622 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12670 58.185 NaN 1130100 35 0 136650 0.261 + 15666 LPEKEVLVL 9 78 520.3235878053417 1038.6326226774834 2 520.3236083984375 MULTI HCD FTMS 0 0 0 12666 416080.21875 0.7168134203464913 -3 0.06536102294921875 4 Unmodified _LPEKEVLVL_ ENSG00000136940|ENST00000259467|PDCL;nc|ENSG00000136940|Q13371-2|PDCL 74.19965305603844 0.007729275404663812 2 [{I|L}P]EKEV{I|L}V{I|L} 9 0 + 78.229 0 0 7.5319 7.5319 89.53 0 0 0 17.147642715192504 55.006806107202344 17.147642715192504 6.9897000433601875 0 1.535666875892183 1.3010299956639813 0.9049471895720984 0 + + [{I|L}P]EKEV{I|L}V{I|L};[{I|L}P]EKD{I|L}{I|L}V{I|L};[{I|L}P][SG]{I|L}EV{I|L}V{I|L};[{I|L}P]EKEV{I|L}{I|L}V;[{I|L}P]EKEVV{I|L}{I|L};[{I|L}P][SG]{I|L}D{I|L}{I|L}V{I|L};[{I|L}P]EKD{I|L}{I|L}{I|L}V;[{I|L}P][SG]{I|L}EV{I|L}{I|L}V;[{I|L}P]EKD{I|L}V{I|L}{I|L};[{I|L}P][SG]{I|L}EVV{I|L}{I|L} 7.5319;6.8589;6.8584;6.4886;6.4475;6.1855;5.8156;5.8151;5.7745;5.774 +;-;-;-;-;-;-;-;-;- + 277 NaN NaN 257140.5 NaN 9623 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12671 58.189 NaN 451010 35 0 38861 0.262 + 17053 LYKFSADEF 9 79 560.2713412570143 1118.5281295808286 2 560.2713012695312 MULTI HCD FTMS 0 0 0 12666 141249.078125 0.7233940108026478 4 -0.11149978637695312 5 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 65.47368725323818 0.010552856507075443 2 {I|L}YK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F} 9 0 + 95.587 0 0 8.5458 8.5458 95.373 0 0 0 66.686296826175 16.478174818886373 16.478174818886373 17.064856298445576 0 2.774227503252014 2 0.7059771852360797 0.3494850021680094 + + {I|L}YK{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]K{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[YK]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]D{M(Oxidation (M))|F}T[KG]E{M(Oxidation (M))|F};[Y{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}CWK{M(Oxidation (M))|F};[Y{I|L}]D{M(Oxidation (M))|F}T{[DA]|[EG]}K{M(Oxidation (M))|F};[RH]WT{M(Oxidation (M))|F}PE{M(Oxidation (M))|F};{[ET]|[MV]}[TP][{I|L}P]WE{M(Oxidation (M))|F} 8.5458;7.0202;4.2468;4.1452;3.9926;3.8761;2.7626;1.7483 +;+;-;-;-;-;-;- + 447 + NaN NaN 158556.2 NaN 9624 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12672 58.192 NaN 303990 35 0 29728 0.261 + 22193 QLLEYEASA 9 60 512.2526096987231 1022.4906664642461 2 512.2523803710938 MULTI HCD FTMS 0 0 0 12666 105719.6953125 0.5405352257489314 -1 0.02297210693359375 6 Unmodified _QLLEYEASA_ ENSG00000254986|ENST00000531863|DPP3;nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3 26.88365393820708 0.12808753336095696 2 {I|L}EED 4 6 32.053 0 0 3.1348 0 0 241.14398154650718 292.1273287408813 533.2713102873885 0 0 0 0 0 0.6307196863200843 0 0.3807196863200844 0 {I|L}EED 3.1348 - 144 + NaN NaN 132267 NaN 9625 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12673 58.195 NaN 359470 35 0 22599 0.261 + 12740 KYAWVLDKL 9 86 568.3293368524772 1134.6441207717544 2 568.32958984375 MULTI HCD FTMS 0 0 0 12666 142359.578125 0.6898390211341359 4 -0.11149978637695312 7 Unmodified _KYAWVLDKL_ ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 103.82355648334675 0.003950725192926219 2 [YK]AWV{I|L}D{I|L}K 9 2 + 82.633 0 0 7.2827 7.2827 86.336 0 0 0 8.158625701014685 0.39590623023812554 0.39590623023812554 0.39590623023812554 0 2.274227503252014 0 0.5228787452803376 1.1808845489566888 [YK]AWV{I|L}D{I|L}K;[YK]AWV{I|L}DK{I|L};KYAWV{I|L}DK{I|L} 7.2827;7.2479;6.5637 -;+;+ + 512 NaN NaN 144966.2 NaN 9626 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12674 58.199 NaN 507250 35 0 70947 0.261 + 18852 NAELWQVSW 9 74 566.7753210247591 1131.5360891163182 2 566.7749633789062 MULTI HCD FTMS 0 0 0 12666 110879.6953125 0.3922011701204442 -10 0.2525672912597656 8 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 32.78568957990786 0.09846250359632436 2 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 9 6 + 62.527 0 0 5.5259 5.5259 86.646 0 0 0 2.922152515121219 52.83432574970952 2.922152515121219 8.559633285374147 0 2.4489700043360187 0 0.7614393726401688 0 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW;[YR][YT]ASVSW;[YR]AS[YT]VSW;[YR]A[YT]SVSW;[YR]{[SA]|[TG]}[YT]VSW;{[CT]|[{M(Oxidation (M))|F}G]}SVSA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[RD];[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS{[DA]|[EG]};[YR]{M(Oxidation (M))|F}{[MG]|[TS]}SW[VS];[YQ]VSA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[RD];[YR]{M(Oxidation (M))|F}{[MG]|[TS]}SAP{[CT]|[{M(Oxidation (M))|F}G]} 5.5259;4.7694;4.3275;4.3275;4.1134;3.7005;3.3565;3.3565;2.572;1.9593 -;-;-;-;-;-;-;-;-;- 921 NaN NaN 169084.5 NaN 9627 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12675 58.202 NaN 273110 35 0 20622 0.261 -1 0 68 582.7694864269237 1163.5244199206472 2 582.76953125 MULTI HCD FTMS 0 0 0 12666 125842.4609375 0.9982428316872094 -1 0.02297210693359375 9 NaN NaN 2 SW 2 -1 27.563 0 0 2.3689 0 0 872.4015319755928 0 872.4015319755928 0 5.115618994235689 0 0 0 0.8494850021680094 0 0.2614393726401688 0 SW 2.3689 - 68 NaN NaN 136652.7 NaN 9628 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12676 58.205 NaN 233300 35 0 20630 0.261 + 11346 IYNGIASPII 10 75 530.8053992931267 1059.5962456530533 2 530.792724609375 MULTI HCD FTMS 0 0 0 12666 23693.962890625 0.4406508768187873 -2 0.05243682861328125 10 Unmodified _IYNGIASPII_ REV__ENSG00000128519|ENST00000249284|TAS2R16 13.042465956692817 0.38911719078024076 2 {I|L}{I|L} 2 -1 17.474 0 0 1.6491 0 0 815.4128662521738 0 815.4128662521738 0 3.4948500216800937 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.6491 + + 83 NaN NaN 127134.4 NaN 9629 3045 12666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12678 58.21 NaN 1696100 35 0 204860 0.327 + 31484 VYEYVVERF 9 91 602.3060934816108 1202.5976340300215 2 602.3062133789062 MULTI HCD FTMS 0 0 0 12677 852431.75 0.8957657624049847 -1 0.036182403564453125 1 Unmodified _VYEYVVERF_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 125.0377797344192 0.0009059125702818869 2 VYEYVVER{M(Oxidation (M))|F} 9 0 + 116.76 0 0 9.7092 9.7092 90.497 0 0 0 2.667366974076529 2.667366974076529 2.667366974076529 2.667366974076529 0 3.3494850021680094 1.6989700043360187 1.1663865622122673 0 + + VYEYVVER{M(Oxidation (M))|F};[YV]EYVVER{M(Oxidation (M))|F};[YV]EVYVER{M(Oxidation (M))|F};[YV]EYVEVR{M(Oxidation (M))|F};[YE]VYVVER{M(Oxidation (M))|F};[YV]EVYEVR{M(Oxidation (M))|F};[YV]EYVERV{M(Oxidation (M))|F};[YE]VVYVER{M(Oxidation (M))|F};[YV]VEYVER{M(Oxidation (M))|F};[YE]VYVEVR{M(Oxidation (M))|F} 9.7092;9.4874;8.8992;8.4904;8.344;7.9023;7.8243;7.7558;7.3793;7.347 +;+;-;-;-;-;-;-;-;- + 5768 + NaN NaN 346314.2 NaN 9630 3046 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12679 58.215 NaN 953610 35 0 245240 0.264 + 1706 CGSSKYHL 8 76 447.7108728279699 893.4071927227399 2 447.7108459472656 MULTI HCD FTMS 0 0 0 12677 310644.28125 1 0 0 2 Unmodified _CGSSKYHL_ ENST00000471538.1_1_1:16200459-16203174:+|nuORF 28.486842064014134 0.3788298654084067 2 WV 2 8 42.065 0 0 4.7084 0 0 0 605.2395041659705 605.2395041659705 8.23064017839119 0 0 0 0 0.5866968715561641 2 0 0 WV 4.7084 - 101 + NaN NaN 237260.7 NaN 9631 3046 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12680 58.218 NaN 685790 35 0 46892 0.261 + 22744 QYESKVFYL 9 95 588.8005820977656 1175.5866112623312 2 588.8013305664062 MULTI HCD FTMS 0 0 0 12677 158417.015625 0.0697956408514418 15 -0.42844390869140625 3 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 30.636539890814138 0.10832830463492794 2 {I|L}NEV{I|L}QH{I|L}{M(Oxidation (M))|F} 9 8 34.14 0 0 2.9041 0 0 64.0214136259561 0 64.0214136259561 0 9.750547101681878 0 0 0 0 0 0.2614393726401688 0 {I|L}NEV{I|L}QH{I|L}{M(Oxidation (M))|F} 2.9041 - 2914 + NaN NaN 194995.2 NaN 9632 3046 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12681 58.222 NaN 370960 35 0 24156 0.261 + 22513 QRSLYIDLGA 10 89 568.3091678110598 NaN 0 568.3291015625 PEAK HCD FTMS 0 0 0 12677 16375.1484375 1 0 0 4 Unmodified _QRSLYIDLGA_ ENSG00000107968|ENST00000263056|MAP3K8;nc|ENSG00000107968|P41279-2|MAP3K8 18.373094154950223 0.29381359703516324 2 KD{I|L}C(Carbamidomethyl (C)){I|L}D 6 7 36.604 0 0 3.2261 0 0 131.05743218507592 256.16636072330317 387.2237929083791 0 0 0 0 0 0 0 1.110924374808178 0 KD{I|L}C(Carbamidomethyl (C)){I|L}D 3.2261 - 424 + NaN NaN 142870.9 NaN 9633 3046 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12682 58.225 NaN 211190 35 0 27366 0.261 -1 SACREYPS 8 54 485.2086963606127 968.4028397880254 2 485.2084655761719 MULTI HCD FTMS 0 0 0 12677 102564.6875 0.3667200496279413 4 -0.09827423095703125 5 Carbamidomethyl (C) _SAC(Carbamidomethyl (C))REYPS_ ENSG00000106479|ENST00000223210|ZNF862 6.723162845929126 0.5320176132289695 2 SAS 3 -1 23.104 0 0 2.3858 0 0 0 720.2530611627561 720.2530611627561 10.032059605518311 0 0 0 0 0 0 0.3807196863200844 0 SAS 2.3858 - 11 + NaN NaN 116389.6 NaN 9634 3046 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12683 58.228 NaN 340740 35 0 71219 0.261 + 1609 AYVPGFAHI 9 61 487.7585357133048 973.5025184934096 2 487.7585144042969 MULTI HCD FTMS 0 0 0 12677 110798.4921875 0.37715409767079494 7 -0.18031692504882812 6 Unmodified _AYVPGFAHI_ ENSG00000107874|ENST00000369937|CUEDC2;ENST00000477994.1_1_10:104183924-104192326:-|nuORF 28.173230860318316 0.11963627304438548 2 VC{I|L} 3 7 35.445 0 0 3.641 0 0 640.3331551588691 0 640.3331551588691 0 33.39394387499517 0 0 0 0.9247425010840047 0 0 0 VC{I|L} 3.641 - 16 NaN NaN 138477.4 NaN 9635 3046 12677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12685 58.233 NaN 1662700 35 0 339380 0.327 + 12658 KWFFQKLRF 9 97 433.91680466671517 1298.7285846003456 3 433.91693115234375 MULTI HCD FTMS 0 0 0 12684 720772.1875 0.8684312880167024 1 -0.039501190185546875 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 86.33184430468982 0.004622086694044132 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 90.544 0 0 6.9718 6.9718 86.888 0 0 0 13.590671722280234 5.228787452803374 5.228787452803374 3.0102999566398125 0 1.6549471895720984 0 0 1.1421590589602533 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}{M(Oxidation (M))|F}R;KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}{I|L}R;K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}{M(Oxidation (M))|F}R 6.9718;6.74;6.5691;6.4336;6.3374;6.2627;6.2018;6.0309;5.9253;5.8601 +;-;-;-;-;-;-;-;-;- + 896 + NaN NaN 337749.1 NaN 9636 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12686 58.238 NaN 736030 35 0 58392 0.261 + 2690 DVHGPDWNL 9 96 526.7434812935712 1051.4724096539423 2 526.7434692382812 MULTI HCD FTMS 0 0 0 12684 510802.09375 1 0 0 2 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 85.64151623876279 0.004640175941193596 2 [DV]H[PG]DWN{I|L} 9 0 + 66.966 0 0 6.3688 6.3688 91.015 0 0 0 18.346204161453024 14.247425010840047 14.247425010840047 13.455612550363796 0 1.610924374808178 1.6989700043360187 0.5796896906561032 0.4247425010840047 + + [DV]H[PG]DWN{I|L};[DV]H[PG]DWGG{I|L};[DV]H[PG]DW{I|L}N;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWN{I|L};[DV]H[PG]D{I|L}WN;{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DWGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}DW{I|L}N;{NN|[MP]|[D{I|L}]|[EV]}W[YR]DAN;[WD][YR]{[DA]|[EG]}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[YD]|[{M(Oxidation (M))|F}M]}D{I|L}WN 6.3688;5.0891;5.0138;4.6239;4.2774;3.7431;3.2689;3.2385;3.0106;2.5326 +;-;-;-;-;-;-;-;-;- + 653 NaN NaN 198447.4 NaN 9637 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12687 58.241 NaN 515680 35 0 88155 0.261 + 35935 YYTPITPHL 9 68 552.7899741769265 1103.565395420653 2 552.7899780273438 MULTI HCD FTMS 0 0 0 12684 238888.5625 0.4550953437292863 8 -0.216339111328125 3 Unmodified _YYTPITPHL_ ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|9|fusion 97.07464715276575 0.004340583992084827 2 YYTP{I|L}T 6 3 54.799 0 0 4.9656 0 0 0 362.1848771923905 362.1848771923905 38.600840614449794 0 0 0 0 2.1677353201839438 2 1.0356668758921828 0 + YYTP{I|L}T 4.9656 + + 331 NaN NaN 167191.7 NaN 9638 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12688 58.245 NaN 383210 35 0 71326 0.261 + 31399 VYAILTHGI 9 57 493.7873172492928 NaN 0 493.78729248046875 PEAK HCD FTMS 0 0 0 12684 230292.71875 0.8600138897754938 1 -0.039501190185546875 4 Unmodified _VYAILTHGI_ ENSG00000101911|ENST00000380668|PRPS2;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1 104.79918948944588 1.1506827078849996E-05 2 YA{I|L}{I|L}TH 6 3 59.315 0 0 6.0184 0 0 99.07321740698565 185.09278284244377 284.16600024942943 0 0 0 0 0 2.6747425010840047 0 0.3807196863200844 0 + YA{I|L}{I|L}TH 6.0184 + + 76 + NaN NaN 141483.5 NaN 9639 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12689 58.248 NaN 342390 35 0 41976 0.261 + 18614 MWDRCFNI 8 70 542.7384592696552 1083.4623656061103 2 542.7383422851562 MULTI HCD FTMS 0 0 0 12684 147174 0.3672893168587535 3 -0.07532119750976562 5 Unmodified _MWDRCFNI_ ENST00000437600.8_1_7:101459221-101671393:+|nuORF;ENST00000547394.6_1_7:101459320-101713628:+|nuORF;ENST00000607092.1_1_7:101459320-101559506:+|nuORF 23.1484247019978 0.4234759064137959 2 D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 5 4 27.062 0 0 2.4978 0 0 505.22972304511876 0 505.22972304511876 0 12.797508963427338 0 0 0 0.5 0 0.5891368308784531 0.2614393726401688 D{[MS]|[{M(Oxidation (M))|F}A]}N{I|L} 2.4978 - 152 NaN NaN 143383 NaN 9640 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12690 58.251 NaN 424230 35 0 78971 0.261 + 5736 FPAGYMYPSM 10 67 598.243700017282 1194.4728471013639 2 598.243896484375 MULTI HCD FTMS 0 0 0 12684 221717.640625 1 0 0 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 2 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 59.742 0 0 5.0015 0 0 63.99692395455515 0 63.99692395455515 0 52.663800089887545 0 0 0 1.4247425010840047 0 1.5484550065040281 0 TSP[VS]{M(Oxidation (M))|F}PY{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.0015 - 446 + NaN NaN 156031.7 NaN 9641 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12691 58.254 NaN 416300 35 0 51330 0.262 + 27729 TASPLEHIL 9 66 490.7742972142139 979.5340414952278 2 490.7743225097656 MULTI HCD FTMS 0 0 0 12684 116956.7421875 0.615845008658587 1 -0.039501190185546875 7 Unmodified _TASPLEHIL_ ENSG00000101191|ENST00000395343|DIDO1 71.13359017698441 0.008721403657255008 2 [TA]SP{I|L}EH{I|L}{I|L} 9 0 + 59.063 0 0 6.0298 6.0298 93.407 0 0 0 40.48000610965907 8.256886463274284 8.256886463274284 59.06349996614132 0 1.8494850021680094 1.6989700043360187 0.4247425010840047 0 + + [TA]SP{I|L}EH{I|L}{I|L} 6.0298 + + 88 + NaN NaN 151974.2 NaN 9642 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12692 58.258 NaN 343030 35 0 71400 0.261 + 2223 DKDETGAYL 9 52 506.2337695405634 NaN 0 506.23382568359375 PEAK HCD FTMS 0 0 0 12684 131403.53125 0.8446713643151005 1 -0.039501190185546875 8 Unmodified _DKDETGAYL_ ENSG00000167977|ENST00000301738|KCTD5;ENSG00000180901|ENST00000322444|KCTD2;ENST00000570005.5_1_16:2732549-2747193:+|nuORF 8.745405648335112 0.25286782695573473 2 Y 1 8 11.99 0 0 1.1866 0 0 131.0951164831842 713.2719739696975 844.3670904528817 0 0 0 0 0 0.5 0 0 0 + Y 1.1866 + + 1 + NaN NaN 146210.9 NaN 9643 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12693 58.261 NaN 395650 35 0 45366 0.261 + 10685 IPVSRDWEL 9 78 557.7981456998011 1113.5817384664022 2 557.7984008789062 MULTI HCD FTMS 0 0 0 12684 159897.5 0.9863337969375137 -1 0.022953033447265625 9 Unmodified _IPVSRDWEL_ ENSG00000204469|ENST00000376033|PRRC2A;ENST00000487089.1_1_6:31603319-31603595:+|nuORF;ENST00000487839.1_1_6:31603188-31603595:+|nuORF;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A 27.223235318498237 0.1251536255799991 2 {I|L}P[HN][YK]TE{I|L} 9 5 + 35.951 0 0 3.2284 3.2284 88.928 0 0 0 11.487118443221938 9.760811173760196 9.760811173760196 35.951068594982594 0 0.9604093769761874 0 0.8494850021680094 0.25 {I|L}P[HN][YK]TE{I|L} 3.2284 - 246 + NaN NaN 162184.9 NaN 9644 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12694 58.264 NaN 361120 35 0 18911 0.261 + 22799 QYLENLEKL 9 79 575.3107696715552 1148.6069864099104 2 575.310546875 MULTI HCD FTMS 0 0 0 12684 86645.2265625 0.6172874612365176 1 -0.039501190185546875 10 Unmodified _QYLENLEKL_ ENSG00000157106|ENST00000446231|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000540706.5_1_16:21899129-21899858:-|nuORF;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 51.41523569358685 0.02959097413485123 2 QY{I|L}EN{I|L}EK{I|L} 9 0 + 57.077 0 0 4.9692 4.9692 86.908 0 0 0 39.96400028310828 7.242114117416001 7.242114117416001 9.208187539523749 0 0.9269359821608809 0 0.3807196863200844 0.23965182871044374 + + QY{I|L}EN{I|L}EK{I|L};QY{I|L}EGG{I|L}EK{I|L};K[{M(Oxidation (M))|F}E]EN{I|L}EK{I|L};K[{M(Oxidation (M))|F}E]EGG{I|L}EK{I|L};{[QN]|[E{I|L}]|[KN]}KWW{M(Oxidation (M))|F}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{[VA]|[{I|L}G]}W{M(Oxidation (M))|F}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}N{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}E{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}GG{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{I|L};{[QN]|[E{I|L}]|[KN]}K{[DA]|[EG]}{[DA]|[EG]}{M(Oxidation (M))|F}K{I|L} 4.9692;4.1676;3.956;3.1543;3.0336;2.8637;2.8215;2.7526;2.0198;1.4256 +;-;-;-;-;-;-;-;-;- + 540 + NaN NaN 142376.5 NaN 9645 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12695 58.268 NaN 180260 35 0 19056 0.262 + 26416 STEQQQLI 8 63 473.7457320738319 945.4769112144638 2 473.7456359863281 MULTI HCD FTMS 0 0 0 12684 126731.15625 0.8761807702657463 6 -0.1573638916015625 11 Unmodified _STEQQQLI_ REV__nc|ENSG00000198265|P42694-2|HELZ 50.855029805455786 0.12247309515496523 2 {I|L}[DC]Q{I|L}{I|L} 6 -1 49.742 0 0 5.2611 0 0 242.12677199531407 0 242.12677199531407 0 36.64320017660792 0 0 0 1 0 1.1861818737241734 0.8494850021680094 {I|L}[DC]Q{I|L}{I|L} 5.2611 - 38 NaN NaN 116803.3 NaN 9646 3047 12684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12697 58.273 NaN 809050 35 0 129220 0.327 + 17054 LYKFSADEF 9 97 560.2713412570143 1118.5281295808286 2 560.289306640625 MULTI HCD FTMS 0 0 0 12696 124480.921875 0.6375174587962805 7 -0.17683792114257812 1 Unmodified _LYKFSADEF_ ENSG00000176261|ENST00000468695|ZBTB8OS;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS 74.19965305603844 0.007729275404663812 2 [Y{I|L}]K{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F} 9 0 + 49.685 0 0 4.442 4.442 84.348 0 0 0 6.7560479590687095 -0.5719970140535366 -0.5719970140535366 6.761204884618607 0 2.193672679568534 1.5228787452803376 0 0 + + [Y{I|L}]K{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};M[DV]D{I|L}EE[R{I|L}];[Y{I|L}]D{M(Oxidation (M))|F}T[KG]E{M(Oxidation (M))|F};[Y{I|L}]D{M(Oxidation (M))|F}T{[DA]|[EG]}K{M(Oxidation (M))|F};{I|L}[EC]D{I|L}EE[R{I|L}];MYD[RH]E[R{I|L}];[YK]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ADE{M(Oxidation (M))|F};[Y{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}C[WK]{M(Oxidation (M))|F};[Y{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}C[WQ]{M(Oxidation (M))|F};[YV][WP]{I|L}DT[EP] 4.442;3.8375;3.0575;2.8462;2.7912;2.5237;2.1625;1.9101;1.9101;1.7129 +;-;-;-;-;-;-;-;-;- + 1409 NaN NaN 210070.8 NaN 9647 3048 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12698 58.277 NaN 377940 35 0 63132 0.261 + 15271 LPAAGVGDMVM 11 62 538.7592169785191 1075.5038810238382 2 538.7597045898438 MULTI HCD FTMS 0 0 0 12696 202349.875 1 0 0 2 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 71.92227651296345 0.013463123628000074 2 AGV[DG]MV{M(Oxidation (M))|F} 8 3 55.8 0 0 5.1883 0 0 281.1734791486344 0 281.1734791486344 0 52.523656471886326 0 0 0 2.809894379144197 0 0.4247425010840047 0 + AGV[DG]MV{M(Oxidation (M))|F} 5.1883 + + 232 NaN NaN 162410.8 NaN 9648 3048 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12699 58.281 NaN 240620 35 0 27629 0.261 -1 EYMEHVYLI 9 58 606.7836750989703 1211.5527972647405 2 607.2855224609375 MULTI HCD FTMS 0 0 0 12696 144639.015625 0.2691590328008401 -7 0.19415664672851562 3 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 2 TVVT 4 -1 25.745 0 0 2.125 0 0 62.990694965252096 745.3026168635998 808.293311828852 0 0 0 0 0 0 0 0.3807196863200844 0 TVVT 2.125 - 48 + NaN NaN 123348.5 NaN 9649 3048 12696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12701 58.286 NaN 573830 35 0 42626 0.327 + 35855 YYQNYFEKL 9 66 634.3035096882438 1266.5924664432875 2 634.8053588867188 MULTI HCD FTMS 0 0 0 12700 150531.375 0.10604806798060781 -2 0.052364349365234375 1 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 143.90916361153978 1.5265063399744E-05 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 117.18 0 0 9.2514 9.2514 93.606 0 0 0 8.138181262758266 8.138181262758266 8.138181262758266 9.208187539523749 0 3.048455006504028 2 0.6989700043360187 1.110924374808178 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}E{I|L}K;YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}E{I|L}K;YYQGGY{M(Oxidation (M))|F}E{I|L}K;YY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}E{I|L}K;YY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YQ]EK{I|L} 9.2514;8.5244;8.5244;8.0706;7.8008;7.3436;7.3436;6.0727;5.7183;5.1622 +;-;-;-;-;-;-;-;-;- + 350 + NaN NaN 173211.4 NaN 9650 3049 12700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12702 58.29 NaN 227880 35 0 43922 0.264 -1 MKGHLGVCL 9 56 487.249944654071 NaN 0 487.25048828125 PEAK HCD FTMS 0 0 0 12700 40544.2578125 0.6052299205803119 3 -0.07878875732421875 2 Oxidation (M) _M(Oxidation (M))KGHLGVCL_ ENST00000528443.6_1_1:179887855-179888017:+|nuORF 8.593279151180031 0.2536050107310812 2 CV 2 -1 10.969 0 0 1.1279 0 0 130.08032036107323 637.3101900690061 767.3905104300793 0 0 0 0 0 0 0 0 0 CV 1.1279 - 11 + NaN NaN 124101.1 NaN 9651 3049 12700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12703 58.294 NaN 239590 35 0 21300 0.261 + 20769 PGNFFHVL 8 63 465.7453089605638 929.4760649879277 2 465.7448425292969 MULTI HCD FTMS 0 0 0 12700 48785.53515625 0.31773675796742457 -6 0.16393661499023438 3 Unmodified _PGNFFHVL_ ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000105953|Q02218-2|OGDH;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant 5.230669730166228 0.5342319408533849 2 AQV{I|L} 4 6 32.423 0 0 3.4883 0 0 500.23579604316564 0 500.23579604316564 0 17.81865655543953 0 0 0 0.5 0 0 0 AQV{I|L} 3.4883 - 99 NaN NaN 127103.5 NaN 9652 3049 12700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12704 58.297 NaN 165310 35 0 26572 0.261 + 29235 TYLLDKTDLF 10 43 410.2206185297237 1227.6400261893712 3 410.55523681640625 MULTI HCD FTMS 0 0 0 12700 21981.330078125 0.38830336296730256 1 -0.02295684814453125 4 Unmodified _TYLLDKTDLF_ REV__ENSG00000166450|ENST00000389286|PRTG;REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant 12.855947597645695 0.39086182057914826 2 TY 2 -1 40.969 0 0 3.3372 0 0 0 960.5050994234529 960.5050994234529 13.138181262758266 0 0 0 0 0 2 0 0 TY 3.3372 + + 9 + NaN NaN 113096.8 NaN 9653 3049 12700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12705 58.3 NaN 86078 35 0 11874 0.261 + -1 LPRQSQRSKCF 11 43 469.5823651566001 NaN 0 469.7439270019531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _LPRQSQRSKC(Carbamidomethyl (C))F_ REV__ENST00000432678.6_1_3:48731584-48732558:-|nuORF 1.214830529360525 0.33867401910978034 2 Y 1 -1 6.9897 0 0 0.74585 0 0 321.7928908583189 449.27594934635005 771.068840204669 0 0 0 0 0 0 0 0 0 Y 0.74585 - 2 + NaN NaN 103449.8 NaN 9654 3049 12700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12706 58.304 NaN 191630 35 0 9333 0.261 + 18677 MYLFSAAASW 10 62 573.7660373812079 1145.5175218292156 2 573.7646484375 MULTI HCD FTMS 0 0 0 12700 55266.83984375 0.7385174749396066 2 -0.0426025390625 6 Unmodified _MYLFSAAASW_ nc|ENSG00000056586|Q9HBD1-4|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2 13.90604991867851 0.3810395177745597 2 SW 2 8 30.217 0 0 2.6378 0 0 854.3915781382622 0 854.3915781382622 0 7.552725051033065 0 0 0 0.9247425010840047 0 0 0 + SW 2.6378 + + 47 NaN NaN 118277.6 NaN 9655 3049 12700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12708 58.309 NaN 918190 35 0 214030 0.327 + 4023 ERTSSSTI 8 93 440.72126228054947 NaN 0 440.7213134765625 PEAK HCD FTMS 0 0 0 12707 548776.625 0.2979996437753406 4 -0.11487197875976562 1 Unmodified _ERTSSSTI_ REV__ENSG00000116962|ENST00000264187|NID1;REV__nc|ENSG00000116962|P14543-2|NID1 23.1484247019978 0.3827488267290106 2 V 1 -1 14.49 0 0 1.6476 0 0 186.07928578893626 591.2572527395847 777.336538528521 0 0 0 0 0 0.75 0 0 0 V 1.6476 - 203 + NaN NaN 230409.6 NaN 9656 3050 12707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12709 58.313 NaN 221320 35 0 39315 0.261 -1 0 58 593.1557833889034 592.1485069223033 1 593.1574096679688 MULTI HCD FTMS 0 0 0 12707 60525.26953125 0.5514508655210284 -30 0.7888107299804688 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 114514.7 NaN 9657 3050 12707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12710 58.317 NaN 182480 35 0 10234 0.261 + -1 YLAMGAQQMK 10 58 578.7772007108827 NaN 0 578.77783203125 PEAK HCD FTMS 0 0 0 12707 38729.921875 0.703168594054294 17 -0.5038871765136719 3 Oxidation (M) _YLAM(Oxidation (M))GAQQMK_ REV__ENSG00000111300|ENST00000261745|NAA25;REV__ENST00000552527.5_1_12:112478245-112546577:-|nuORF;REV__nc|ENSG00000111300|Q14CX7-2|NAA25 6.723162845929126 0.3344301934401713 2 YC 2 -1 10.969 0 0 0.94926 0 0 114.08282087921687 772.3464066831062 886.4292275623231 0 0 0 0 0 0 0 0 0 YC 0.94926 - 10 + NaN NaN 110399.4 NaN 9658 3050 12707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12711 58.32 NaN 133880 35 0 11524 0.261 + -1 SFKNHCSI 8 51 496.7340544665731 991.4535559999463 2 496.7337646484375 MULTI HCD FTMS 0 0 0 12707 35590.9609375 0.6303998301827708 4 -0.11487197875976562 4 Carbamidomethyl (C) _SFKNHC(Carbamidomethyl (C))SI_ REV__ENST00000545247.6_1_11:18505612-18548363:-|nuORF 10.823927491677226 0.514154816617796 2 VS{I|L} 3 -1 29.693 0 0 2.9949 0 0 674.2595082013687 0 674.2595082013687 0 10.088643834802156 0 0 0 0.5 0 0 0 VS{I|L} 2.9949 - 53 NaN NaN 109767.8 NaN 9659 3050 12707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12712 58.323 NaN 817020 35 0 86019 0.262 + 21646 PYRLIFEKF 9 96 404.8973947492548 1211.6703548479643 3 404.8975524902344 MULTI HCD FTMS 0 0 0 12707 239622.421875 0.3890498587877912 -2 0.03582000732421875 5 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 72.58957779350692 0.008250269663349257 2 PYR{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 96.667 0 0 7.978 7.978 93.915 0 0 0 60.92145952513228 16.478174818886373 16.478174818886373 13.547575072713158 0 2.778659694992122 1.6989700043360187 0 0.6307196863200843 + + PYR{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}T[VG]{M(Oxidation (M))|F};P[VP][HV]{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F};[YR]P{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{M(Oxidation (M))|F}{I|L}T[VG]{M(Oxidation (M))|F};P[VP]E{I|L}{M(Oxidation (M))|F}[HV]K{M(Oxidation (M))|F} 7.978;6.8599;6.364;5.4388;5.1732;5.1569;5.0353;5.0203;4.943;4.661 +;+;-;-;-;-;-;-;-;- + 939 + NaN NaN 212521.9 NaN 9660 3050 12707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12714 58.328 NaN 3063100 35 0 849610 0.327 + 32011 VYPLMKEYF 9 100 603.2992016658338 1204.5838503984676 2 603.2991333007812 MULTI HCD FTMS 0 0 0 12713 1707599.5 0.4253747205254759 -11 0.2725028991699219 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 89.40071534611396 0.0045416704840156395 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 84.633 0 0 7.0259 7.0259 87.068 0 0 0 14.37022187087372 16.478174818886373 14.37022187087372 3.187587626244124 0 2.2302046884880937 2 0.6747425010840047 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P]Y[DP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[Y{I|L}]PV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F} 7.0259;6.7613;5.8329;5.6535;5.5764;5.5683;5.4927;5.4561;5.4046;5.3999 +;-;-;-;-;-;-;-;-;- + 3893 NaN NaN 548452.4 NaN 9661 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12715 58.333 NaN 1739500 35 0 102300 0.261 + 6458 FPIHVQTSL 9 106 521.2900924368115 1040.565631940423 2 521.2900390625 MULTI HCD FTMS 0 0 0 12713 885904.8125 1 0 0 2 Unmodified _FPIHVQTSL_ ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7 131.26759243768294 0.0005280990274065272 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L} 9 0 + 82.844 0 0 7.9614 7.9614 93.529 0 0 0 14.471172114978657 36.84259031635486 14.471172114978657 12.26280941356464 0 2.110924374808178 1.154901959985743 0.75 0.3054621874040891 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HV[AG]TS{I|L};[{I|L}P]{M(Oxidation (M))|F}HVQTS{I|L};[{I|L}P]H{M(Oxidation (M))|F}VQTS{I|L};[{I|L}P]{M(Oxidation (M))|F}HV[AG]TS{I|L};{[TV]|[{I|L}S]}TQVHP{M(Oxidation (M))|F}{I|L};[{I|L}P]H{M(Oxidation (M))|F}V[AG]TS{I|L};[YR]QV[Y{I|L}]S{I|L};{I|L}HP{M(Oxidation (M))|F}VQTS{I|L};[{I|L}P]H{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}TS{I|L} 7.9614;6.783;6.1154;5.247;4.9369;4.3595;4.0685;3.7236;3.7038;3.5677 +;-;-;-;-;-;-;-;-;- + 2088 NaN NaN 347713 NaN 9662 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12716 58.336 NaN 244710 35 0 57728 0.261 + 22120 QIIEEDAAL 9 48 501.26118857196053 1000.5078242107211 2 501.2612609863281 MULTI HCD FTMS 0 0 0 12713 136325.78125 0.10959746626902557 5 -0.15095138549804688 3 Unmodified _QIIEEDAAL_ ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF 27.628801355627647 0.12213550946336599 2 AA{I|L} 3 6 27.703 0 0 2.7689 0 0 727.3402577130875 0 727.3402577130875 0 8.239087409443187 0 0 0 0.5 0 0 0 + AA{I|L} 2.7689 + + 56 NaN NaN 119469.9 NaN 9663 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12717 58.34 NaN 297090 35 0 36660 0.261 + 8647 HFDLNLRQF 9 63 595.3096176649464 1188.6046823966926 2 595.309326171875 MULTI HCD FTMS 0 0 0 12713 122524.4765625 0.8462423177572757 1 -0.03618621826171875 4 Unmodified _HFDLNLRQF_ ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant 59.368380827593164 0.01846506874148156 2 {[{M(Oxidation (M))|F}H]|[RQ]}D{I|L}N{I|L}RQ{M(Oxidation (M))|F} 9 0 + 61.781 0 0 5.1978 5.1978 87.231 0 0 0 3.104028237526748 53.82245020145518 3.104028237526748 9.208187539523749 0 2.274227503252014 1.6989700043360187 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}H]|[RQ]}D{I|L}N{I|L}RQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}D{I|L}N{I|L}R[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][HV]N{I|L}RQ{M(Oxidation (M))|F} 5.1978;4.4231;1.3506 +;-;- + 117 NaN NaN 143676.7 NaN 9664 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12718 58.343 NaN 272970 35 0 19319 0.261 + 20003 NYIEKVVAI 9 66 524.8055964868107 NaN 0 524.8052978515625 PEAK HCD FTMS 0 0 0 12713 63119.50390625 0.10042882491623407 5 -0.15095138549804688 5 Unmodified _NYIEKVVAI_ ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 29.84058131909904 0.12134613108984595 2 {I|L} 1 8 16.237 0 0 1.5499 0 0 277.10761611850904 654.382248508248 931.489864626757 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.5499 + + 68 + NaN NaN 144267.5 NaN 9665 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12719 58.346 NaN 245380 35 0 24878 0.261 + 17700 MASDVWHTAL 10 62 565.7670983525405 NaN 0 565.76708984375 PEAK HCD FTMS 0 0 0 12713 109812.265625 0.732717785135785 6 -0.17717742919921875 6 Unmodified _MASDVWHTAL_ REV__nc|ENSG00000044115|P35221-2|CTNNA1 14.838274106304384 0.3224471714378502 2 MS 2 -1 21.722 0 0 1.9231 0 0 71.05654220403888 837.3875826471311 908.44412485117 0 0 0 0 0 1 0 0.4247425010840047 0 MS 1.9231 - 17 + NaN NaN 140875 NaN 9666 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12720 58.349 NaN 1466900 35 0 187370 0.261 + 1491 AYTPFHAVL 9 96 509.7714760713858 1017.5283992095716 2 509.7716979980469 MULTI HCD FTMS 0 0 0 12713 347827.34375 0.18944618715395206 -4 0.09496688842773438 7 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 144.65680182435614 1.4474712564967525E-05 2 AYTP{M(Oxidation (M))|F}HAV{I|L} 9 0 + 75.094 0 0 7.3801 7.3801 95.207 0 0 0 35.175289429799854 12.57061229970418 12.57061229970418 39.8843810057643 0 1.8851518780601921 2 0.8494850021680094 0 + + AYTP{M(Oxidation (M))|F}HAV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AHVT{I|L}YA;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AHVTAY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AHVT{I|L}AY;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AH[YT]AV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AHVTA{I|L}Y;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[KP]QPYA;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AH[YT][{I|L}V]A;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[KP]QPAY 7.3801;3.4603;2.9213;2.8686;2.8503;1.8383;1.1908;0.8284;0.59912 +;-;-;-;-;-;-;-;- + 454 + NaN NaN 314336.8 NaN 9667 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12721 58.353 NaN 1976800 35 0 314540 0.261 -1 0 118 582.3447276431323 1162.6749023530645 2 582.3448486328125 MULTI HCD FTMS 0 0 0 12713 397193.1875 0.0841568313392533 -4 0.09496688842773438 8 NaN NaN 2 YAWV{I|L}DK{I|L} 8 -1 71.864 0 0 6.181 0 0 156.12724046538136 0 156.12724046538136 0 40.697712420993675 0 0 0 2.8723637474483468 0 1.7984550065040281 0.3252574989159953 YAWV{I|L}DK{I|L} 6.181 - 3227 + NaN NaN 395261.6 NaN 9668 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12722 58.356 NaN 68703 35 0 21550 0.263 + 4108 ESTLPGTVI 9 32 458.7530774057947 915.4916018783895 2 458.7527770996094 MULTI HCD FTMS 0 0 0 12713 56656.56640625 0.03263751179840363 13 -0.3958168029785156 9 Unmodified _ESTLPGTVI_ ENSG00000113205|ENST00000231130|PCDHB3;PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant 11.640296217721598 0.25978676193971967 2 TV{I|L} 3 6 32.747 0 0 3.577 0 0 584.278612205275 0 584.278612205275 0 17.26280941356464 0 0 0 0.3807196863200844 0 0.4247425010840047 0 + TV{I|L} 3.577 + + 6 NaN NaN 111851.6 NaN 9669 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12723 58.359 NaN 421350 35 0 52312 0.261 + 26991 SYLPHAPPFA 10 70 550.2809887121199 1098.5474244910397 2 550.2825317382812 MULTI HCD FTMS 0 0 0 12713 151867.234375 0.5663591893796861 -7 0.17707443237304688 10 Unmodified _SYLPHAPPFA_ ENSG00000171223|ENST00000302754|JUNB 71.13359017698441 0.016242133362018647 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PHAPPA{M(Oxidation (M))|F} 10 2 + 41.362 0 0 3.7652 3.7652 88.03 0 0 0 18.174651450984776 2.5575879296048143 2.5575879296048143 18.452304776570433 0 2.017220322351953 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PHAPPA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PHHA;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]WA;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}[MT];[HV]PP[PS][YV]G{M(Oxidation (M))|F};[HV]P[YT]AP[PA]{M(Oxidation (M))|F} 3.7652;2.0855;1.9926;1.2838;0.91004;0.67721 -;-;-;-;-;- 265 + NaN NaN 163990.8 NaN 9670 3051 12713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12725 58.364 NaN 939560 35 0 99950 0.327 + 32949 YAISSSVISF 10 92 537.2793985335732 1072.5442441339462 2 537.2763061523438 MULTI HCD FTMS 0 0 0 12724 329715.8125 0.8621408837860342 -1 0.03618621826171875 1 Unmodified _YAISSSVISF_ ENSG00000184845|ENST00000393752|DRD1 65.23502041540118 0.023231415588018726 2 AY{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F} 9 6 + 108.73 0 0 10.137 10.137 95.906 0 0 0 75.14743040311222 14.973024840566467 14.973024840566467 12.703037561203843 0 2.1237125054200234 2 0.7134679910804405 0 AY{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};AY{I|L}SG{M(Oxidation (M))|F}[{I|L}V]G{M(Oxidation (M))|F};AY{I|L}S[VS]S{I|L}S{M(Oxidation (M))|F};AY{I|L}S[VS]MR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};AY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SG{M(Oxidation (M))|F}{I|L}[VG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[WM]R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}S{M(Oxidation (M))|F};AY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}[{I|L}V]G{M(Oxidation (M))|F} 10.137;8.9529;7.9785;7.7348;7.5572;6.9343;6.6987;6.4484;6.2894;5.7449 -;-;-;-;-;-;-;-;-;- 956 + NaN NaN 228359.5 NaN 9671 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12726 58.369 NaN 551530 35 0 84320 0.261 + 18853 NAELWQVSW 9 75 566.7753210247591 1131.5360891163182 2 566.7750244140625 MULTI HCD FTMS 0 0 0 12724 192374.9375 0.680464312033887 -3 0.07878875732421875 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 36.12702656103203 0.08312389501731911 2 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 9 6 + 71.449 0 0 6.3143 6.3143 86.98 0 0 0 9.137342758552691 59.14197490877392 9.137342758552691 6.237125054200234 0 2.2302046884880937 0 0.7742275032520141 0.7302046884880937 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW;[YR]A[YT]SVSW;[YR]A[YT]WSSV;[YR]AS[YT]VSW;[YR]{M(Oxidation (M))|F}{[MG]|[TS]}WSSV;[YR]{M(Oxidation (M))|F}{[MG]|[TS]}SWSV;[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VS{[DA]|[EG]};[YR]A[YT]SWSV;[YR]AS[YT]WSV;[YR]AS{[MG]|[TS]}[YV]W 6.3143;5.7631;5.5173;5.4469;5.1848;4.5005;4.2115;3.9493;3.6331;3.4809 -;-;-;-;-;-;-;-;-;- 665 NaN NaN 176330.8 NaN 9672 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12727 58.372 NaN 566930 35 0 87466 0.261 -1 IYPEVVHMF 9 78 575.7842277234141 1149.5539025136281 2 575.7839965820312 MULTI HCD FTMS 0 0 0 12724 127122.2734375 0.6275388157203079 -3 0.07878875732421875 3 Oxidation (M) _IYPEVVHM(Oxidation (M))F_ ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C 24.67388899826682 0.14717941214954053 2 [Y{I|L}][EP]VV 6 -1 25.947 0 0 2.2571 0 0 0 446.1501558893188 446.1501558893188 12.759169494624132 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}][EP]VV 2.2571 + + 76 + NaN NaN 174495.9 NaN 9673 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12728 58.376 NaN 208040 35 0 15867 0.261 + 17428 LYRQYFEEI 9 49 630.8167045733603 1259.6188562135205 2 630.8170166015625 MULTI HCD FTMS 0 0 0 12724 89885.296875 0.8718527780303719 1 -0.026210784912109375 4 Unmodified _LYRQYFEEI_ ENSG00000124160|ENST00000290231|NCOA5 19.625955294349634 0.19079243933902879 2 {M(Oxidation (M))|F}EE{I|L} 4 5 35.433 0 0 2.813 0 0 723.370381134951 0 723.370381134951 0 25.74031267727719 0 0 0 0.3494850021680094 0 0 0 + {M(Oxidation (M))|F}EE{I|L} 2.813 + + 51 NaN NaN 135597.4 NaN 9674 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12729 58.379 NaN 258620 35 0 35778 0.261 -1 MPQSMPEYAL 10 54 591.7618901121731 1181.509227291146 2 591.762451171875 MULTI HCD FTMS 0 0 0 12724 87290.953125 0.7524131514633523 -6 0.15410614013671875 5 Oxidation (M) _MPQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 11.494710602746466 0.4035943721457025 2 YA{I|L} 3 -1 34.693 0 0 2.9363 0 0 816.3114491193375 0 816.3114491193375 0 18.494850021680094 0 0 0 0.8494850021680094 0 0 0 YA{I|L} 2.9363 + + 71 NaN NaN 122171.5 NaN 9675 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12730 58.382 NaN 399700 35 0 53528 0.261 + 22745 QYESKVFYL 9 77 588.8005820977656 1175.5866112623312 2 588.8016967773438 MULTI HCD FTMS 0 0 0 12724 71506.453125 0.0315044359419516 21 -0.5976905822753906 6 Unmodified _QYESKVFYL_ ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF 29.081581746732265 0.1154664336125038 2 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[DC]{I|L}DE{I|L} 10 8 + 29.536 0 0 2.5124 2.5124 82.694 0 0 0 2.4080374776506375 5.502349118871379 2.4080374776506375 6.709412807357747 0 0 0 0.8494850021680094 0.5 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[DC]{I|L}DE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}][EP]E{I|L};[QP]{I|L}[WY]{I|L}DE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[DC][QT]Q{I|L};[QP]{I|L}[Y{I|L}]WDE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}{[ES]|[DT]|[{I|L}C]}{[QC]|[C(Carbamidomethyl (C))A]}Q{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YG]{[CA]|SS}{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}{[ES]|[DT]|[{I|L}C]}DDE{I|L};{[QN]|[E{I|L}]|[KN]}KV[DC]{I|L}DE{I|L};[QP]G[WR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L} 2.5124;1.9417;1.8961;1.8354;1.64;1.5794;1.4823;1.3233;1.2777;1.2467 -;-;-;-;-;-;-;-;-;- 1457 NaN NaN 148595 NaN 9676 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12731 58.386 NaN 147920 35 0 11573 0.261 -1 MVTSLEESL 9 50 512.7468007553881 1023.4790485775762 2 512.7462158203125 MULTI HCD FTMS 0 0 0 12724 67468.1015625 0.6887145429422749 5 -0.1409912109375 7 Oxidation (M) _M(Oxidation (M))VTSLEESL_ ENSG00000047410|ENST00000367478|TPR 37.97399986684836 0.07464525285885698 2 [{M(Oxidation (M))|F}V]{[ET]|[MV]}{[TV]|[{I|L}S]}ES{I|L} 9 -1 + 57.487 0 0 5.6168 5.6168 90.619 0 0 0 3.4187607928224963 52.002254649304746 3.4187607928224963 18.723637474483468 0 1.5 2 0.7134679910804405 0 [{M(Oxidation (M))|F}V]{[ET]|[MV]}{[TV]|[{I|L}S]}ES{I|L};{[MS]|[{M(Oxidation (M))|F}A]}E{[TV]|[{I|L}S]}EES{I|L} 5.6168;3.7874 -;- 44 NaN NaN 108210.3 NaN 9677 3052 12724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12733 58.391 NaN 791990 35 0 162420 0.327 + 12659 KWFFQKLRF 9 83 433.91680466671517 1298.7285846003456 3 433.9167785644531 MULTI HCD FTMS 0 0 0 12732 317786.28125 0.38288873284247743 7 -0.21517562866210938 1 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 67.83816525789305 0.009787749748478139 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 85.047 0 0 6.5485 6.5485 89.506 0 0 0 16.478174818886373 12.730012720637376 12.730012720637376 9.208187539523749 0 1.610924374808178 0 0 0.7614393726401688 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[R{I|L}]QK{M(Oxidation (M))|F};{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}[YK]PKR{M(Oxidation (M))|F};{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 6.5485;5.8395;5.5683;4.8593;4.3819;3.77;3.6729;3.4017;3.2803;2.6927 +;-;-;-;-;-;-;-;-;- + 644 + NaN NaN 210400.6 NaN 9678 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12734 58.395 NaN 905770 35 0 100370 0.261 + 4631 EYMEHVYLI 9 89 606.7836750989703 1211.5527972647405 2 606.7837524414062 MULTI HCD FTMS 0 0 0 12732 474494.84375 0.6713163106700308 -2 0.062397003173828125 2 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 70.71552829651908 0.008856681705782516 2 VY{I|L}{I|L} 4 5 38.66 0 0 3.1909 0 0 705.2416859357437 0 705.2416859357437 0 8.703656806099143 0 0 0 1.4247425010840047 0 0 0 + VY{I|L}{I|L} 3.1909 + + 346 NaN NaN 237286.4 NaN 9679 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12735 58.399 NaN 623990 35 0 82133 0.261 + 14268 LCLVGFIGVSI 11 103 589.3350993620455 1176.655645790891 2 589.3348388671875 MULTI HCD FTMS 0 0 0 12732 347594 0.7222375569622825 -2 0.062397003173828125 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))LVGFIGVSI_ REV__ENSG00000155850|ENST00000286298|SLC26A2;REV__SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant 43.85829265575387 0.1121014421682581 2 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L} 9 -1 + 50.555 0 0 4.2965 4.2965 84.614 0 0 0 8.551434250963936 12.089380922211106 8.551434250963936 8.010299956639813 0 1.3494850021680094 0 1.25 0 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[W{M(Oxidation (M))|F}]DK{I|L};{I|L}[YV][WQ]{I|L}DK{I|L};[YQ]{I|L}{[RE]|[WV]}{I|L}DK{I|L};[QP]{I|L}[MT]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}K{I|L};{I|L}[YV]{I|L}[WQ]DK{I|L} 4.2965;3.6157;3.5698;2.8777;2.365;2.1898 -;-;-;-;-;- 935 NaN NaN 191372.4 NaN 9680 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12736 58.402 NaN 796580 35 0 140740 0.261 -1 IYPEVVHMF 9 85 575.7842277234141 1149.5539025136281 2 576.298095703125 MULTI HCD FTMS 0 0 0 12732 87802.4765625 0.7863651251194463 -1 0.026210784912109375 4 Oxidation (M) _IYPEVVHM(Oxidation (M))F_ ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C 38.15118350030904 0.07383188072201104 2 Y{I|L}[EP]VVH{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 + 64.307 0 0 5.5941 5.5941 91.827 0 0 0 50.66692218072937 14.973024840566467 14.973024840566467 34.17903076553699 0 1.3494850021680094 1.6989700043360187 0 0 Y{I|L}[EP]VVH{M(Oxidation (M))|F}{M(Oxidation (M))|F};Y{I|L}[EP]V[WQ]{[ES]|[DT]|[{I|L}C]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}S{I|L}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5941;2.6208;1.4619 -;-;- 335 + NaN NaN 215012.9 NaN 9681 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12737 58.405 NaN 731480 35 0 191590 0.261 + 5737 FPAGYMYPSM 10 98 598.243700017282 1194.4728471013639 2 598.2440185546875 MULTI HCD FTMS 0 0 0 12732 138164.046875 0.6231531531975952 6 -0.1823577880859375 5 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 64.23631603340823 0.02601519761747251 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 46.498 0 0 3.8928 0 0 535.2453480451187 0 535.2453480451187 0 25.163259599183966 0 0 0 1.805462187404089 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.8928 + + 464 NaN NaN 205810.8 NaN 9682 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12738 58.409 NaN 235790 35 0 34873 0.262 + 27864 TDRFAFQL 8 53 499.2587765197494 996.5030001062988 2 499.25885009765625 MULTI HCD FTMS 0 0 0 12732 117586 1 0 0 6 Unmodified _TDRFAFQL_ ENSG00000049769|ENST00000055335|PPP1R3F 25.399314129420986 0.40691472774782006 2 D{M(Oxidation (M))|F}Q{I|L} 4 4 41.542 0 0 4.1688 0 0 475.24885756660314 0 475.24885756660314 0 28.047444008242906 0 0 0 0.7742275032520141 0 0 0.4247425010840047 D{M(Oxidation (M))|F}Q{I|L} 4.1688 - 72 NaN NaN 120477.4 NaN 9683 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12739 58.412 NaN 228720 35 0 26909 0.261 + 15787 LPHFDESTF 9 58 546.7550073839335 1091.495461834667 2 546.7536010742188 MULTI HCD FTMS 0 0 0 12732 96615.9453125 0.7766231236338115 -1 0.026210784912109375 7 Unmodified _LPHFDESTF_ ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 32.30548876998284 0.10066689432505688 2 EST{M(Oxidation (M))|F} 4 5 40.226 0 0 3.6854 0 0 609.2895985334 0 609.2895985334 0 26.731236834369994 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + EST{M(Oxidation (M))|F} 3.6854 + + 81 NaN NaN 116216.7 NaN 9684 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12740 58.415 NaN 261550 35 0 16082 0.261 + 34908 YSIIFAASSW 10 61 572.7883628096338 NaN 0 572.775634765625 PEAK HCD FTMS 0 0 0 12732 10634.7939453125 1 0 0 8 Unmodified _YSIIFAASSW_ REV__ENSG00000136048|ENST00000258534|DRAM1;REV__nc|ENSG00000136048|Q8N682-2|DRAM1 10.073929032068715 0.33156240198919784 2 ST[HK]PR 6 -1 12.396 0 0 1.084 0 0 250.12292515903567 184.04049097232658 434.1634161313623 0 0 0 0 0 0 0 0 0 ST[HK]PR 1.084 - 141 + NaN NaN 125813.3 NaN 9685 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12741 58.418 NaN 174070 35 0 23560 0.262 + 11368 IYNNIKNFVRF 11 43 476.5981345067635 1426.7725741204904 3 476.59814453125 MULTI HCD FTMS 0 0 0 12732 35599.7265625 0.3750954558920723 2 -0.0589752197265625 9 Unmodified _IYNNIKNFVRF_ ENSG00000017260|ENST00000510168|ATP2C1;ENST00000510774.1_1_3:130699433-130714956:+|nuORF;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|4|fusion 7.0370850670814 0.388058401935362 2 {I|L}Y 2 9 45.217 0 0 3.1691 0 0 0 1147.6011566187992 1147.6011566187992 45.21652514092061 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.1691 + + 4 + NaN NaN 112585.2 NaN 9686 3053 12732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12743 58.423 NaN 456290 35 0 57245 0.326 + 29888 VFDKTLAEL 9 71 518.2895984331996 1034.564643933199 2 518.2896728515625 MULTI HCD FTMS 0 0 0 12742 197871.734375 0.4528080354014197 3 -0.08195114135742188 1 Unmodified _VFDKTLAEL_ ENSG00000171681|ENST00000261168|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP 93.93812099017352 0.0044227730261779084 2 [{M(Oxidation (M))|F}V]DKT{I|L}AE{I|L} 9 0 + 63.942 0 0 6.1806 6.1806 85.922 0 0 0 4.018637558036673 8.214562785677657 4.018637558036673 4.018637558036673 0 2.055462187404089 0 1.0356668758921828 0 + + [{M(Oxidation (M))|F}V]DKT{I|L}AE{I|L};[Y{I|L}]NVT{I|L}AE{I|L};[Y{I|L}]D[KA]{I|L}AE{I|L};V{M(Oxidation (M))|F}DKT{I|L}AE{I|L};[Y{I|L}]GGVT{I|L}AE{I|L};[{M(Oxidation (M))|F}V][SG]VT{I|L}AE{I|L};[Y{I|L}]NVTVVD{I|L};[Y{I|L}]D[KA]VVD{I|L};[{M(Oxidation (M))|F}V]DKTVVD{I|L};V{M(Oxidation (M))|F}{[MG]|[TS]}[VG]{I|L}AE{I|L} 6.1806;5.7921;5.5777;5.3866;4.9021;4.7744;3.8984;3.684;3.393;3.3542 +;-;-;+;-;-;-;-;-;- + 585 NaN NaN 163156.4 NaN 9687 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12744 58.428 NaN 792310 35 0 209920 0.261 + 31792 VYLVDQFAKI 10 101 598.3401757698358 1194.6657986064715 2 598.33984375 MULTI HCD FTMS 0 0 0 12742 174845.015625 0.6372782526924954 -3 0.09522628784179688 2 Unmodified _VYLVDQFAKI_ REV__ENSG00000183878|ENST00000545955|UTY;REV__ENST00000474365.1_1_Y:15505723-15591217:-|nuORF;REV__ENST00000478900.5_1_Y:15481200-15591401:-|nuORF;REV__nc|ENSG00000183878|O14607-2|UTY;REV__nc|ENSG00000183878|O14607-3|UTY;REV__nc|ENSG00000183878|O14607-4|UTY;REV__nc|ENSG00000183878|O14607-5|UTY;REV__nc|ENSG00000183878|O14607|UTY 14.405379775768559 0.37636895476610294 2 {I|L}DK{I|L} 4 -1 26.446 0 0 2.2137 0 0 707.3611927716812 0 707.3611927716812 0 0.2531287018201276 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {I|L}DK{I|L} 2.2137 - 426 NaN NaN 206289.4 NaN 9688 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12745 58.431 NaN 228220 35 0 11640 0.261 + 711 AQAKIYWNL 9 73 553.8033923498056 1105.592231766411 2 553.803466796875 MULTI HCD FTMS 0 0 0 12742 71518.734375 0.5696067233817812 1 -0.02614593505859375 3 Unmodified _AQAKIYWNL_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 60.07390631473393 0.0174780869009295 2 [QA]AK{I|L}YWN{I|L} 9 0 + 74.531 0 0 6.7412 6.7412 89.787 0 0 0 10.954839578393347 52.21340305007878 10.954839578393347 9.208187539523749 0 2.1861818737241734 0 0 0.805462187404089 + + [QA]AK{I|L}YWN{I|L};[QA]AK{I|L}YWGG{I|L};[QA]AKHP{NN|[MP]|[D{I|L}]|[EV]}N{I|L} 6.7412;5.9084;1.2704 +;-;- + 320 NaN NaN 126895.8 NaN 9689 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12746 58.435 NaN 194690 35 0 11213 0.261 + 2691 DVHGPDWNL 9 68 526.7434812935712 1051.4724096539423 2 526.7435913085938 MULTI HCD FTMS 0 0 0 12742 49620.67578125 0.09714266325136808 7 -0.21529769897460938 4 Unmodified _DVHGPDWNL_ ENSG00000124942|ENST00000378024|AHNAK 17.11289562659939 0.2125047172822487 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DP]{[CA]|SS}WN{I|L} 9 5 + 30.585 0 0 2.9088 2.9088 87.548 0 0 0 4.594013072432336 4.643171239276413 4.594013072432336 19.788107009300617 0 0.6694451763165201 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DP]{[CA]|SS}WN{I|L};[WD][YR]{[DA]|[EG]}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]}{[CA]|SS}WN{I|L};{[QN]|[E{I|L}]|[KN]}{[CT]|[{M(Oxidation (M))|F}G]}{[CA]|SS}WN{I|L} 2.9088;1.0269;0.72042;0.62825 -;-;-;- 96 NaN NaN 110466.1 NaN 9690 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12747 58.438 NaN 208800 35 0 34386 0.261 -1 0 53 488.3078576363192 487.30058116971924 1 488.3074645996094 MULTI HCD FTMS 0 0 0 12742 58829.04296875 0.8874201378532051 -1 0.03282928466796875 5 NaN NaN 2 {I|L}DK{I|L} 4 -1 + 36.019 0 0 7.3914 7.3914 92.454 0 0 0 12.730012720637376 12.034474256624819 12.034474256624819 12.034474256624819 0 0.6109243748081782 0 0.4247425010840047 0.5484550065040282 {I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L} 7.3914;4.9218;4.8523 -;-;- 24 + NaN NaN 114598.7 NaN 9691 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12748 58.441 NaN 150810 35 0 15001 0.261 + 33858 YLLGEFSDKP 10 50 584.797862202494 1167.581171471788 2 586.3025512695312 MULTI HCD FTMS 0 0 0 12742 29962.5859375 0.41369207685727816 -1 0.03282928466796875 6 Unmodified _YLLGEFSDKP_ REV__ENSG00000185158|ENST00000543378|LRRC37B;REV__ENST00000581786.5_1_17:30349314-30355958:+|nuORF;REV__ENST00000583204.5_1_17:30348129-30360999:+|nuORF;REV__LRRC37B|p.I876Yfs*2|1|0.33|ENSG00000185158|chr17:32049342-32049343|-/T|frameshift_variant;REV__nc|ENSG00000185158|Q96QE4-2|LRRC37B;REV__nc|ENSG00000185158|Q96QE4|LRRC37B 7.289230182591677 0.43672065049472153 2 YYD{I|L} 4 -1 30.802 0 0 2.6381 0 0 0 610.3209535364941 610.3209535364941 5.56347730353643 0 0 0 0 0 2 0 0 YYD{I|L} 2.6381 - 59 NaN NaN 114202.2 NaN 9692 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12749 58.445 NaN 138090 35 0 6258.3 0.261 + 22088 QHSEICAIITQ 11 41 621.8113074372383 1241.6080619412764 2 621.8115844726562 MULTI HCD FTMS 0 0 0 12742 30843.908203125 0.7341827934693771 1 -0.02614593505859375 7 Unmodified _QHSEICAIITQ_ REV__CAPZA1|p.T217Ffs*15|1|0.14|ENSG00000116489|chr1:112667133-112667136|ACTA/-|frameshift_variant;REV__ENSG00000116489|ENST00000263168|CAPZA1;REV__ENSG00000198898|ENST00000361183|CAPZA2;REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF 8.155526934196011 0.3831532958467648 2 HN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 16.198 0 0 1.3046 0 0 712.347882353189 0 712.347882353189 0 16.197887582883936 0 0 0 0 0 0 0 HN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.3046 - 19 + NaN NaN 116399.7 NaN 9693 3054 12742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12751 58.45 NaN 1318600 35 0 133810 0.327 + 35856 YYQNYFEKL 9 99 634.3035096882438 1266.5924664432875 2 634.3035888671875 MULTI HCD FTMS 0 0 0 12750 975361.5 0.46663183374974754 4 -0.123382568359375 1 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 168.5375213894962 4.622051367253751E-09 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 122.05 0 0 9.6364 9.6364 93.92 0 0 0 9.762561216922862 9.762561216922862 9.762561216922862 9.208187539523749 0 3.048455006504028 2 1.2491348669726232 1.0484550065040281 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L};YYN[AG]Y{M(Oxidation (M))|F}EK{I|L};YYNYQ{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}T[VG]{I|L};YYNY[AG]{M(Oxidation (M))|F}EK{I|L} 9.6364;8.9094;8.9094;8.3319;8.1859;7.6048;7.6048;7.224;6.8914;6.497 +;-;-;-;-;-;-;-;-;- + 3190 + NaN NaN 286373.8 NaN 9694 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12752 58.454 NaN 533630 35 0 115730 0.264 + 4024 ERTSSSTI 8 78 440.72126228054947 NaN 0 440.72137451171875 PEAK HCD FTMS 0 0 0 12750 225920.59375 0.12268061974945352 9 -0.274444580078125 2 Unmodified _ERTSSSTI_ REV__ENSG00000116962|ENST00000264187|NID1;REV__nc|ENSG00000116962|P14543-2|NID1 23.1484247019978 0.3827488267290106 2 V 1 -1 14.124 0 0 1.6061 0 0 186.0788397021459 591.2570998983333 777.3359396004792 0 0 0 0 0 0.7134679910804405 0 0 0 V 1.6061 - 122 + NaN NaN 168104.9 NaN 9695 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12753 58.458 NaN 400130 35 0 35476 0.261 + 19861 NYAWVYYHM 9 65 631.7687083198309 1261.5228637064617 2 631.769287109375 MULTI HCD FTMS 0 0 0 12750 138099.8125 0.42542212556169334 -7 0.17683792114257812 3 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 114.94377779790601 0.0021353177819039447 2 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 94.988 0 0 7.5296 7.5296 92.52 0 0 0 23.1687674038008 16.478174818886373 16.478174818886373 11.505149978319906 0 2.548455006504028 1.6989700043360187 0 1.7619229975844686 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]ADAYV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}YAYVYH{M(Oxidation (M))|F};[YN]ADAY{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}HY[PG]{M(Oxidation (M))|F};[YN]WT{[QS]|[NT]}[WM]{M(Oxidation (M))|F};{[WN]|[YH]}YTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]V{[YC]|[HE]}H{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 7.5296;6.6176;4.7821;4.213;3.9276;3.6973;3.5497;2.8994;2.8848;2.8303 -;-;-;-;-;-;-;-;-;- 914 NaN NaN 147235.7 NaN 9696 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12754 58.461 NaN 334980 35 0 34766 0.264 + 6396 FPHGGGFVL 9 66 465.7453089605638 929.4760649879277 2 465.7449645996094 MULTI HCD FTMS 0 0 0 12750 153540.734375 1 0 0 4 Unmodified _FPHGGGFVL_ ENSG00000156345|ENST00000325303|CDK20;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;ENST00000604175.5_1_9:90586022-90589430:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20 9.347437153973935 0.2795965555214564 2 QV{I|L} 3 7 31.198 0 0 3.3565 0 0 571.2675090550753 0 571.2675090550753 0 8.239087409443187 0 0 0 0.5 0 0 0 QV{I|L} 3.3565 - 92 NaN NaN 149288.2 NaN 9697 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12755 58.464 NaN 276470 35 0 46191 0.261 + 14450 LESQDSGYL 9 57 506.2337695405634 NaN 0 506.2340393066406 PEAK HCD FTMS 0 0 0 12750 68897.1015625 0.44287553173463834 9 -0.274444580078125 5 Unmodified _LESQDSGYL_ ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15 9.38312468134398 0.24977752951804 2 Y 1 8 11.99 0 0 1.1866 0 0 131.0973694317916 713.2721555737338 844.3695250055255 0 0 0 0 0 0.5 0 0 0 + Y 1.1866 + + 25 + NaN NaN 131256.6 NaN 9698 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12756 58.468 NaN 184310 35 0 14775 0.261 + 19198 NIGIMRMIL 9 70 530.8053992931267 1059.5962456530533 2 530.7942504882812 MULTI HCD FTMS 0 0 0 12750 16776.150390625 0.3119961575612035 8 -0.2448883056640625 6 Unmodified _NIGIMRMIL_ REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF 11.640296217721598 0.25978676193971967 2 PS[RN]KTP{M(Oxidation (M))|F} 8 -1 17.095 0 0 1.6133 0 0 114.07011695678757 0 114.07011695678757 0 -0.8859124999588239 -0.8859124999588239 0 0 0 0 0.25 0.3807196863200844 PS[RN]KTP{M(Oxidation (M))|F} 1.6133 - 132 + NaN NaN 114954.5 NaN 9699 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12757 58.471 NaN 417960 35 0 95749 0.261 + 8053 GHLFRPDNFIF 11 64 454.90314108363907 1361.6875938511173 3 454.9034423828125 MULTI HCD FTMS 0 0 0 12750 76563.1796875 0.8220543997219132 -1 0.02614593505859375 7 Unmodified _GHLFRPDNFIF_ ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 6.623454094837244 0.3898724468670146 2 V[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F} 5 8 31.026 0 0 2.2785 0 0 677.3493519513687 0 677.3493519513687 0 27.53083433768431 0 0 0 0.8807196863200843 0 0 0 V[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F} 2.2785 - 68 NaN NaN 152079.1 NaN 9700 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12758 58.474 NaN 148500 35 0 11875 0.261 -1 SCHYCSCPAF 10 47 644.7286020924889 NaN 0 644.7286987304688 PEAK HCD FTMS 0 0 0 12750 36422.2109375 1 0 0 8 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))HYC(Carbamidomethyl (C))SC(Carbamidomethyl (C))PAF_ ENSG00000214941|ENST00000399277|ZSWIM7;ENST00000584519.5_1_17:15881363-15902918:-|nuORF 1.6526216038709556 0.33876987398426067 2 Q{M(Oxidation (M))|F} 2 -1 9.3804 0 0 0.72861 0 0 165.079579308394 844.2505587213499 1009.3301380297439 0 0 0 0 0 0.3807196863200844 0 0 0 Q{M(Oxidation (M))|F} 0.72861 - 9 + NaN NaN 114627 NaN 9701 3055 12750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12760 58.479 NaN 5263400 35 0 1540100 0.327 + 32012 VYPLMKEYF 9 94 603.2992016658338 1204.5838503984676 2 603.299560546875 MULTI HCD FTMS 0 0 0 12759 3375118.25 0.8407650519540345 -6 0.17059707641601562 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 99.75527289724121 0.004270341300239591 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 92.177 0 0 7.6522 7.6522 87.025 0 0 0 17.342509624031237 16.478174818886373 16.478174818886373 0.44531259372398324 0 2.2302046884880937 2 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 7.6522;7.6152;6.4102;6.2125;6.1814;6.119;5.8453;5.7828;5.6144;5.5774 +;-;-;-;-;-;-;-;-;- + 2669 NaN NaN 670240.2 NaN 9702 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12761 58.484 NaN 676640 35 0 34022 0.261 + 6459 FPIHVQTSL 9 86 521.2900924368115 1040.565631940423 2 521.2901000976562 MULTI HCD FTMS 0 0 0 12759 291499.71875 0.32904180521087306 5 -0.15957260131835938 2 Unmodified _FPIHVQTSL_ ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7 96.11092074494114 0.00436583732602279 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L} 9 0 + 65.291 0 0 6.2746 6.2746 90.476 0 0 0 8.701294465271154 33.687310492270825 8.701294465271154 12.095442439488096 0 1.7931576817365436 1 0.7059771852360797 0.28872548999643577 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HVQTS{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HV[AG]TS{I|L};[YR]QV[Y{I|L}]S{I|L};[YR]{M(Oxidation (M))|F}K{NN|[MP]|[D{I|L}]|[EV]}S{I|L};{[TV]|[{I|L}S]}TQ[HV]P{M(Oxidation (M))|F}{I|L};[YV]{I|L}Q[YR]S{I|L};{[TV]|[{I|L}S]}G[{M(Oxidation (M))|F}V][YR]S{I|L};[YR][AG]V[Y{I|L}]S{I|L};{[MG]|[TS]}{I|L}Q[HV]P{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}TQ[HV]P{I|L}{M(Oxidation (M))|F} 6.2746;5.1122;3.3421;3.0646;3.049;2.7473;2.7146;2.1745;2.0441;2.0058 +;-;-;-;-;-;-;-;-;- + 799 NaN NaN 192740.4 NaN 9703 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12762 58.487 NaN 520560 35 0 50763 0.262 + 21647 PYRLIFEKF 9 62 404.8973947492548 1211.6703548479643 3 404.8973693847656 MULTI HCD FTMS 0 0 0 12759 187106.53125 0.30378530102270274 4 -0.12662124633789062 3 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 68.75988807550267 0.009489495184080357 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 75.95 0 0 6.2682 6.2682 91.533 0 0 0 19.38547520912806 14.973024840566467 14.973024840566467 17.21848749616356 0 2.3494850021680094 1.6989700043360187 0.3807196863200844 0.28872548999643577 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}T[VG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[K{I|L}]{I|L}{M(Oxidation (M))|F}ER{M(Oxidation (M))|F};P[VP]E{M(Oxidation (M))|F}{I|L}[HV]K{M(Oxidation (M))|F};[YR]P{I|L}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}{I|L}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[YR]{I|L}P{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};P[VP]E{M(Oxidation (M))|F}{I|L}{I|L}R{[QN]|[E{I|L}]|[KN]};[YR]{I|L}{I|L}P{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YR]{I|L}{I|L}{M(Oxidation (M))|F}PEK{M(Oxidation (M))|F} 6.2682;4.8471;4.8172;4.6683;4.4602;4.4286;4.1318;3.9419;3.8135;3.7114 +;-;-;-;-;-;-;-;-;- + 402 NaN NaN 177646.2 NaN 9704 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12763 58.49 NaN 451140 35 0 63320 0.261 + 32096 VYRVYVATF 9 76 559.305703509246 1116.5968540852919 2 560.2894287109375 MULTI HCD FTMS 0 0 0 12759 27813.4375 0.4122001576496676 -2 0.05572509765625 4 Unmodified _VYRVYVATF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 36.12702656103203 0.08312389501731911 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TS{I|L}{I|L}DT 8 8 47.643 0 0 4.2668 0 0 0 239.13366164646234 239.13366164646234 15.815772140178211 0 0 0 0 0 2 0.5941876774005248 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TS{I|L}{I|L}DT 4.2668 - 492 NaN NaN 158661.3 NaN 9705 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12764 58.494 NaN 454850 35 0 30951 0.261 + 8396 GYNVKFDMF 9 84 568.7575579795238 1135.5005630258474 2 568.7578125 MULTI HCD FTMS 0 0 0 12759 189492.90625 0.8897736252802015 2 -0.06422042846679688 5 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ ENSG00000167468|ENST00000354171|GPX4;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;ENST00000589115.5_1_19:1105440-1106426:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4 82.5293158979368 0.005033931517079822 2 [YG]NV[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 9 4 + 63.745 0 0 5.6138 5.6138 86.252 0 0 0 9.264771768807591 7.2184874961635614 7.2184874961635614 7.2184874961635614 0 1.8807196863200843 2 1.055462187404089 0 [YG]NV[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};[YG]NV[YT]{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YG]A{M(Oxidation (M))|F}[YT]VN{[DS]|[MA]|[CV]|TT};[YG]NV[C(Carbamidomethyl (C))H]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YG]GK[C(Carbamidomethyl (C))H]V[C(Carbamidomethyl (C))R];[YG]GGV[YT]{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YG]N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GGV[YT]{M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT};[YG]GG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GGV[C(Carbamidomethyl (C))H]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.6138;4.9781;4.7979;4.4883;4.1732;4.1672;4.0514;3.9908;3.8313;3.6774 -;-;-;-;-;-;-;-;-;- 1601 + NaN NaN 158698.3 NaN 9706 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12765 58.497 NaN 605310 35 0 51406 0.261 + 26992 SYLPHAPPFA 10 93 550.2809887121199 1098.5474244910397 2 550.2811279296875 MULTI HCD FTMS 0 0 0 12759 151600.375 0.565363989460985 -2 0.05572509765625 6 Unmodified _SYLPHAPPFA_ ENSG00000171223|ENST00000302754|JUNB 54.773552608820026 0.0604291769046433 2 NEGW{I|L}{I|L} 6 10 36.63 0 0 3.3344 0 0 368.18004042793126 0 368.18004042793126 0 9.28080506410111 0 0 0 0.6307196863200843 0 0 0.7302046884880937 NEGW{I|L}{I|L} 3.3344 - 1363 NaN NaN 172456.7 NaN 9707 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12766 58.5 NaN 425770 35 0 47515 0.261 + 7652 FYISPVNKL 9 88 540.8083873784906 1079.602221823781 2 540.8080444335938 MULTI HCD FTMS 0 0 0 12759 73945.3828125 0.5343474728747641 2 -0.06422042846679688 7 Unmodified _FYISPVNKL_ AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;ENSG00000105778|ENST00000318709|AVL9;nc|ENSG00000105778|Q8NBF6-2|AVL9 36.12702656103203 0.08312389501731911 2 [Y{M(Oxidation (M))|F}]{I|L}S[VP]Q{[QV]|[N{I|L}]|[RA]|[KV]} 9 2 + 50.92 0 0 4.7166 4.7166 86.518 0 0 0 8.753246544333777 29.862490292415558 8.753246544333777 9.208187539523749 0 1.805462187404089 1.0969100130080565 0.2742275032520141 0 [Y{M(Oxidation (M))|F}]{I|L}S[VP]Q{[QV]|[N{I|L}]|[RA]|[KV]};[Y{M(Oxidation (M))|F}]{I|L}S[VP][AG]{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]{M(Oxidation (M))|F}S[VP]Q{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]{M(Oxidation (M))|F}S[VP][AG]{[QV]|[N{I|L}]|[RA]|[KV]};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}[{I|L}T]Q{[QV]|[N{I|L}]|[RA]|[KV]} 4.7166;3.8636;3.6597;2.8068;0.18497 -;-;-;-;- 253 NaN NaN 153501.7 NaN 9708 3056 12759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12768 58.505 NaN 4392500 35 0 734900 0.327 -1 0 127 582.3447276431323 1162.6749023530645 2 582.3450927734375 MULTI HCD FTMS 0 0 0 12767 3475071.75 0.7362941670709139 2 -0.06757736206054688 1 NaN NaN 2 YAWV{I|L}DK{I|L} 8 -1 76.143 0 0 6.549 0 0 156.12670217442673 0 156.12670217442673 0 28.587060740671234 0 0 0 2.916386562212267 0 1.8539171939081172 0.5866968715561641 YAWV{I|L}DK{I|L} 6.549 - 5126 + NaN NaN 571570.6 NaN 9709 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12769 58.51 NaN 1836700 35 0 253330 0.261 + 1492 AYTPFHAVL 9 80 509.7714760713858 1017.5283992095716 2 509.7716064453125 MULTI HCD FTMS 0 0 0 12767 1077340.375 0.5867797054433244 2 -0.06757736206054688 2 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 106.8454739257335 0.003457388669738163 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[TV]|[{I|L}S]}YAV 8 4 45.596 0 0 4.481 0 0 0 146.08311349158637 146.08311349158637 22.307131330965717 0 0 0 0 0.9247425010840047 2 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[TV]|[{I|L}S]}YAV 4.481 - 389 NaN NaN 369042.4 NaN 9710 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12770 58.513 NaN 673740 35 0 93018 0.261 + 18854 NAELWQVSW 9 81 566.7753210247591 1131.5360891163182 2 566.7752075195312 MULTI HCD FTMS 0 0 0 12767 221967.90625 0.7851398970305505 2 -0.06757736206054688 3 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 2 SVYTSVSW 8 6 63.397 0 0 5.6027 0 0 204.09129777894594 0 204.09129777894594 0 49.92397559303541 0 0 0 0.5 0 1.2302046884880937 0 SVYTSVSW 5.6027 - 580 + NaN NaN 185312.4 NaN 9711 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12771 58.517 NaN 357100 35 0 33034 0.261 + 19720 NYAQVLDKF 9 71 549.2850859610089 1096.5556189888177 2 549.2850952148438 MULTI HCD FTMS 0 0 0 12767 143902.40625 0.9068340484811749 1 -0.037994384765625 4 Unmodified _NYAQVLDKF_ ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF;nc|ENSG00000153317|Q9ULH1-2|ASAP1 67.08073823543168 0.010032840856489532 2 [YN]AQV{I|L}DK{M(Oxidation (M))|F} 9 0 + 104.89 0 0 9.5652 9.5652 93.859 0 0 0 0.7525749891599531 0.7525749891599531 0.7525749891599531 9.208187539523749 0 3.2302046884880937 2 0 0.2742275032520141 + + [YN]AQV{I|L}DK{M(Oxidation (M))|F};[YN]A[AG]V{I|L}DK{M(Oxidation (M))|F};[YN]AQV{I|L}N[Y{I|L}];Q[YG]QV{I|L}DK{M(Oxidation (M))|F};[YN]AQV{I|L}GG[Y{I|L}];[YN]A[AG]V{I|L}N[Y{I|L}];[YN]A[KT]EPK{M(Oxidation (M))|F};Q[YG][AG]V{I|L}DK{M(Oxidation (M))|F};[RH]D{I|L}VQA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[AG]V{I|L}GG[Y{I|L}] 9.5652;8.7254;6.9224;6.7165;6.0827;6.0827;5.8864;5.8768;5.7812;5.2469 +;-;-;-;-;-;-;-;-;- + 454 + NaN NaN 140441.9 NaN 9712 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12772 58.52 NaN 687230 35 0 54374 0.261 + 21306 PSEPTLNIGF 10 84 537.7766499468985 1073.5387469605969 2 537.78515625 MULTI HCD FTMS 0 0 0 12767 32572.06640625 0.18413487239243906 4 -0.1333465576171875 5 Unmodified _PSEPTLNIGF_ REV__ENSG00000081985|ENST00000674203|IL12RB2;REV__nc|ENSG00000081985|Q99665-2|IL12RB2;REV__nc|ENSG00000081985|Q99665-3|IL12RB2 17.11289562659939 0.35104376501799556 2 YYK{[QV]|[N{I|L}]|[RA]|[KV]}G{I|L}G{M(Oxidation (M))|F} 9 -1 + 52.163 0 0 4.859 4.859 88.021 0 0 0 3.735225922989656 11.818048224298082 3.735225922989656 11.631132153227782 0 1.1307196863200843 1.6989700043360187 0 0 YYK{[QV]|[N{I|L}]|[RA]|[KV]}G{I|L}G{M(Oxidation (M))|F};YYK{[QG]|[NA]}{I|L}R{M(Oxidation (M))|F};YYK[KG]S{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}GST[KT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}[KA]A{[CT]|[{M(Oxidation (M))|F}G]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{M(Oxidation (M))|F}[RN]{[CT]|[{M(Oxidation (M))|F}G]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ]T[KT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YQ]ST[KT];Y[KG]SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};YYRRNV{[CT]|[{M(Oxidation (M))|F}G]} 4.859;3.7755;3.7581;3.7434;2.9045;2.7405;2.51;2.2254;2.1192;2.0426 -;-;-;-;-;-;-;-;-;- 641 + NaN NaN 190767.4 NaN 9713 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12773 58.523 NaN 281370 35 0 42357 0.263 + 11044 IYFFHHYEL 9 55 423.54141403874405 1267.6024127164321 3 423.5414123535156 MULTI HCD FTMS 0 0 0 12767 91305.328125 0.9475040856621351 -1 0.026226043701171875 6 Unmodified _IYFFHHYEL_ ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF 16.149105407346934 0.22083165093524068 2 {I|L}Y 2 7 38.756 0 0 3.0574 0 0 0 988.4328817072445 988.4328817072445 18.750612633917 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 + {I|L}Y 3.0574 + + 17 + NaN NaN 127052.4 NaN 9714 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12774 58.532 NaN 445130 35 0 54800 0.261 + 29178 TYISWKEEL 9 72 584.797862202494 1167.581171471788 2 584.7970581054688 MULTI HCD FTMS 0 0 0 12767 128512.6484375 0.3824714327911677 -2 0.055805206298828125 7 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 76.82478488871298 0.006879825292024087 2 [YT]{I|L}SW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L} 9 0 + 81.488 0 0 6.9792 6.9792 94.823 0 0 0 13.715234340851481 68.47295930833134 13.715234340851481 50.511525224473814 0 2 2 1.2614393726401687 0 + + [YT]{I|L}SW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L};{[TV]|[{I|L}S]}[YT]W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}KKW{NN|[MP]|[D{I|L}]|[EV]}{[MS]|[{M(Oxidation (M))|F}A]} 6.9792;2.6531;1.3875 +;-;- + 272 NaN NaN 161735.6 NaN 9715 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12775 58.535 NaN 165060 35 0 16334 0.261 + 35994 YYYKLEDMI 9 54 619.2939724153129 1236.5733918974256 2 619.294189453125 MULTI HCD FTMS 0 0 0 12767 53492.2890625 0.8471661159437486 -7 0.1968231201171875 8 Unmodified _YYYKLEDMI_ REV__ENSG00000165046|ENST00000379957|LETM2;REV__nc|ENSG00000165046|Q2VYF4-2|LETM2;REV__nc|ENSG00000165046|Q2VYF4-3|LETM2 4.3292370932331545 0.3181982124262546 2 YY{I|L}QTQ{I|L}Y 8 -1 44.59 0 0 3.6059 0 0 0 161.0228297238506 161.0228297238506 39.105187973125624 0 0 0 0 0 2 0 0 YY{I|L}QTQ{I|L}Y 3.6059 - 161 NaN NaN 118748.3 NaN 9716 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12776 58.538 NaN 155780 35 0 26758 0.263 -1 MAYGVEPAL 9 48 483.733785298194 965.453017663188 2 483.7339172363281 MULTI HCD FTMS 0 0 0 12767 24904.623046875 0.5088996608763575 -1 0.026226043701171875 9 Oxidation (M) _M(Oxidation (M))AYGVEPAL_ ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A 23.1484247019978 0.1603590852062899 2 EPA{I|L} 4 -1 29.737 0 0 3.0801 0 0 537.2261167194198 0 537.2261167194198 0 22.74735947860492 0 0 0 1.274227503252014 0 0.3807196863200844 0 EPA{I|L} 3.0801 + + 21 NaN NaN 119124 NaN 9717 3057 12767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12778 58.543 NaN 1019300 35 0 115880 0.327 + 4632 EYMEHVYLI 9 81 606.7836750989703 1211.5527972647405 2 606.783935546875 MULTI HCD FTMS 0 0 0 12777 593494.75 0.8396776302630418 3 -0.0953521728515625 1 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 117.59872219059416 0.0017018906413822257 2 [YE]{M(Oxidation (M))|F}EHVY{I|L}{I|L} 9 0 + 79.552 0 0 6.5662 6.5662 90.909 0 0 0 38.87710867039969 44.62074003522409 38.87710867039969 11.760912590556813 0 2.2376954943324545 1.5228787452803376 2.055462187404089 0 + + [YE]{M(Oxidation (M))|F}EHVY{I|L}{I|L};[YE]{M(Oxidation (M))|F}EHV{I|L}Y{I|L};[YE]{M(Oxidation (M))|F}EHV{I|L}{I|L}Y;[YE]{M(Oxidation (M))|F}EH{I|L}VY{I|L};[YE]{M(Oxidation (M))|F}EH{I|L}V{I|L}Y 6.5662;5.5954;4.5473;4.2552;3.2071 +;-;-;-;- + 507 NaN NaN 252594.6 NaN 9718 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12779 58.548 NaN 561900 35 0 104560 0.264 + 12660 KWFFQKLRF 9 68 433.91680466671517 1298.7285846003456 3 433.9166564941406 MULTI HCD FTMS 0 0 0 12777 252271.171875 0.30395204271237114 12 -0.3439598083496094 2 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 67.83816525789305 0.009787749748478139 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 82.235 0 0 6.332 6.332 86.483 0 0 0 15.351584312837048 12.730012720637376 12.730012720637376 4.771212547196626 0 1.6307196863200843 0 0 0.7614393726401688 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 6.332;5.9646;5.6229;5.3518;5.2556;5.1499;4.9844;4.6428;4.4409;4.2754 +;-;-;-;-;-;-;-;-;- + 504 + NaN NaN 171881.1 NaN 9719 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12780 58.551 NaN 229090 35 0 41282 0.261 + -1 VYRQGMYMR 9 63 610.2888939467254 1218.5632349602506 2 610.2884521484375 MULTI HCD FTMS 0 0 0 12777 57964.9140625 0.6745194594468793 1 -0.029582977294921875 3 Oxidation (M) _VYRQGM(Oxidation (M))YMR_ REV__ENSG00000132463|ENST00000254799|GRSF1;REV__ENST00000505068.5_1_4:71691792-71705589:-|nuORF;REV__nc|ENSG00000132463|Q12849-5|GRSF1 8.593279151180031 0.2858735984551981 2 P{M(Oxidation (M))|F} 2 -1 21.454 0 0 1.7606 0 0 956.4309491573968 0 956.4309491573968 0 2.870156338638594 0 0 0 0.3494850021680094 0 0 0 P{M(Oxidation (M))|F} 1.7606 - 26 NaN NaN 120739.6 NaN 9720 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12781 58.555 NaN 344230 35 0 29268 0.261 -1 MPQSMPEYAL 10 69 591.7618901121731 1181.509227291146 2 591.7620239257812 MULTI HCD FTMS 0 0 0 12777 116014.65625 1 0 0 4 Oxidation (M) _MPQSM(Oxidation (M))PEYAL_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 11.494710602746466 0.4035943721457025 2 NPPY[H{I|L}]AE 8 -1 29.267 0 0 2.4771 0 0 0 257.09308801822505 257.09308801822505 -4.673348509372026 0 -4.673348509372026 0 0 0 0 0.3807196863200844 0 NPPY[H{I|L}]AE 2.4771 - 402 + NaN NaN 147462.6 NaN 9721 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12782 58.558 NaN 677260 35 0 82222 0.263 -1 AYVCIFLWRSF 11 80 487.91723193478174 1460.7298664045452 3 487.9172668457031 MULTI HCD FTMS 0 0 0 12777 142738.9375 0.6015754120972652 -3 0.09379959106445312 5 Carbamidomethyl (C) _AYVC(Carbamidomethyl (C))IFLWRSF_ ENSG00000047597|ENST00000378616|XK;XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant 13.51866281300042 0.33929385944539686 2 TEGS{M(Oxidation (M))|F} 5 -1 62.792 0 0 4.2987 0 0 921.5056484053152 0 921.5056484053152 0 37.31090231437648 0 0 0 1.8723637474483468 0 0.8494850021680094 0 TEGS{M(Oxidation (M))|F} 4.2987 - 430 NaN NaN 195249.1 NaN 9722 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12783 58.561 NaN 176340 35 0 24019 0.261 + 26203 SPSFGDPQL 9 49 474.22726510771594 946.4399772822319 2 474.23590087890625 MULTI HCD FTMS 0 0 0 12777 65282.3125 0.9518334113605323 -3 0.09379959106445312 6 Unmodified _SPSFGDPQL_ ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-3|SVIL;nc|ENSG00000197321|O95425-4|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.7951 0 0 781.3612246960976 0 781.3612246960976 0 11.505149978319906 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7951 + + 10 + NaN NaN 104978.1 NaN 9723 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12784 58.565 NaN 219540 35 0 28100 0.261 + 35516 YYFSLSSL 8 51 490.2419010560655 978.469249178931 2 490.242431640625 MULTI HCD FTMS 0 0 0 12777 72402.3828125 0.5967086297317262 -4 0.11994552612304688 7 Unmodified _YYFSLSSL_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 34.10243960390752 0.30669083636501265 2 {I|L}SS{I|L} 4 4 50.433 0 0 5.1543 0 0 560.2250233380875 0 560.2250233380875 0 35.828956512079344 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + {I|L}SS{I|L} 5.1543 + + 24 NaN NaN 117323.7 NaN 9724 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12785 58.568 NaN 183820 35 0 29965 0.261 + 24070 RYADDSFTPAF 11 52 645.2932888648961 1288.5720247965921 2 645.2930297851562 MULTI HCD FTMS 0 0 0 12777 59942.234375 1 0 0 8 Unmodified _RYADDSFTPAF_ ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A 13.614867670302875 0.33845562336951207 2 T[PA]{M(Oxidation (M))|F} 4 7 30.445 0 0 2.3627 0 0 854.3580799787125 0 854.3580799787125 0 29.47621246364342 0 0 0 1 0 0.4247425010840047 0 + T[PA]{M(Oxidation (M))|F} 2.3627 + + 13 NaN NaN 122471.5 NaN 9725 3058 12777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12787 58.573 NaN 472280 35 0 45017 0.327 + -1 LCLVGFIGVSI 11 97 589.3350993620455 1176.655645790891 2 589.3345947265625 MULTI HCD FTMS 0 0 0 12786 195012.640625 0.4052010481819697 4 -0.1215057373046875 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))LVGFIGVSI_ REV__ENSG00000155850|ENST00000286298|SLC26A2;REV__SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant 29.081581746732265 0.20726811077697932 2 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L} 9 -1 + 48.113 0 0 4.089 4.089 86.811 0 0 0 12.903624586739681 28.688259181417948 12.903624586739681 10.796896906561024 0 1.2302046884880937 0 0.9247425010840047 0.3252574989159953 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}DK{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}[W{M(Oxidation (M))|F}]DK{I|L} 4.089;3.1714 -;- 1174 NaN NaN 154859.1 NaN 9726 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12788 58.577 NaN 491720 35 0 50416 0.261 + 32097 VYRVYVATF 9 70 559.305703509246 1116.5968540852919 2 559.3059692382812 MULTI HCD FTMS 0 0 0 12786 195070 0.7734167002024038 1 -0.032817840576171875 2 Unmodified _VYRVYVATF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 103.35351024395868 0.004027461563756449 2 [YV]RVYVAT{M(Oxidation (M))|F} 9 0 + 107.39 0 0 9.6178 9.6178 98.184 0 0 0 12.945312593723983 12.945312593723983 12.945312593723983 40.94335023848103 0 3.2059771852360797 1.3979400086720375 2.2302046884880937 0 + + [YV]RVYVAT{M(Oxidation (M))|F};[YV]RVY[TA]V{M(Oxidation (M))|F};[YV]R[{I|L}T]{M(Oxidation (M))|F}AT{M(Oxidation (M))|F};[YV]GVVYV[YR];[{M(Oxidation (M))|F}T][R{I|L}]YVAT{M(Oxidation (M))|F};[YV]RVYVG[YV];[YV][{I|L}P][HA]VAT{M(Oxidation (M))|F};[YV]RV[TA]YV{M(Oxidation (M))|F};[YV]GVVYR[YV];WAAVG[VP]VAT{M(Oxidation (M))|F} 9.6178;5.951;5.8198;5.7728;5.5722;5.2337;5.1732;4.9447;4.8533;4.8135 +;-;-;-;-;-;-;-;-;- + 1142 + NaN NaN 174736.2 NaN 9727 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12789 58.581 NaN 301720 35 0 30031 0.261 + 35234 YVNKFASLF 9 72 544.7926710868645 1087.570789240529 2 544.7922973632812 MULTI HCD FTMS 0 0 0 12786 126699.4453125 0.7545024419456363 1 -0.032817840576171875 3 Unmodified _YVNKFASLF_ ENSG00000124067|ENST00000316341|SLC12A4;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant 44.40701690623563 0.04511410083598184 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[RP]WP{I|L}T 8 8 35.155 0 0 3.2325 0 0 0 60.99318448454088 60.99318448454088 4.355509023322952 0 0 0 0 1.1677353201839438 1.5228787452803376 0.6861818737241735 0.9247425010840047 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[RP]WP{I|L}T 3.2325 - 445 NaN NaN 141635.8 NaN 9728 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12790 58.584 NaN 250240 35 0 19289 0.261 + 11611 IYTRVTYYL 9 59 596.3262727850944 1190.6379926369887 2 596.3244018554688 MULTI HCD FTMS 0 0 0 12786 80492.078125 0.6319623214265451 3 -0.09196853637695312 4 Unmodified _IYTRVTYYL_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 32.78568957990786 0.09846250359632436 2 TYY{I|L} 4 5 49.438 0 0 4.1522 0 0 632.3627796857437 0 632.3627796857437 0 43.496075289514096 0 0 0 1 0 0.75 0 + TYY{I|L} 4.1522 + + 110 NaN NaN 120366 NaN 9729 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12791 58.588 NaN 872540 35 0 69067 0.261 + 33520 YIERYMYI 8 88 575.7842277234141 1149.5539025136281 2 576.2854614257812 MULTI HCD FTMS 0 0 0 12786 47957.3515625 0.4295093969815105 5 -0.15106201171875 5 Unmodified _YIERYMYI_ REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF 34.10243960390752 0.30669083636501265 2 Y{I|L}C(Carbamidomethyl (C))SSVQY{I|L} 9 -1 Y{I|L} + + 58.55 39.949 13.581 5.0933 5.0933 62.447 0 0 0 0 15.608119897044404 0 0 0 0 0 1.3851518780601921 0.3252574989159953 Y{I|L}C(Carbamidomethyl (C))SSVQY{I|L} 5.0933 - 998 NaN NaN 232737.9 NaN 9730 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12792 58.591 NaN 337890 35 0 30799 0.261 + 17172 LYLVARAVKL 10 75 573.373917870656 1144.7332828081119 2 573.8751831054688 MULTI HCD FTMS 0 0 0 12786 137524.25 1 0 0 6 Unmodified _LYLVARAVKL_ REV__ENSG00000128578|ENST00000249344|STRIP2;REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2 22.736283301280096 0.29844449404982915 2 [Y{I|L}]{I|L}RVQ{I|L}K{I|L} 9 -1 + 58.312 0 0 5.094 5.094 87.085 0 0 0 19.6265249738142 41.3173657553704 19.6265249738142 9.208187539523749 0 1.4489700043360187 1.6989700043360187 0 0 [Y{I|L}]{I|L}RVQ{I|L}K{I|L};[Y{I|L}]{I|L}RV[AG]{I|L}K{I|L};[Y{I|L}]{I|L}RVQK{I|L}{I|L};[Y{I|L}]{I|L}RV[AG]K{I|L}{I|L} 5.094;4.2896;3.8671;3.0627 -;-;-;- 99 NaN NaN 149561.4 NaN 9731 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12793 58.594 NaN 134120 35 0 9482.7 0.261 + -1 YNFFLECHM 9 46 638.7584941009046 1275.5024352686091 2 638.7594604492188 MULTI HCD FTMS 0 0 0 12786 52026.83203125 0.6359178267104729 -3 0.09380340576171875 7 Carbamidomethyl (C),Oxidation (M) _YNFFLEC(Carbamidomethyl (C))HM(Oxidation (M))_ REV__PTH2R|p.S403Y|1|0.5|ENSG00000144407|chr2:208489143-208489143|C/A|missense_variant 7.910154910731844 0.2910521888787154 2 [YN]AW 4 -1 39.481 0 0 3.0954 0 0 0 738.2574556940061 738.2574556940061 21.271774472715315 0 0 0 0 0.805462187404089 1.5228787452803376 0 0 [YN]AW 3.0954 - 69 + NaN NaN 105559.6 NaN 9732 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12794 58.598 NaN 227590 35 0 16899 0.262 + 19463 NPSVREFVL 9 71 530.7929050215179 1059.5712571098356 2 530.793212890625 MULTI HCD FTMS 0 0 0 12786 83016.5625 0.004235423077205644 79 -2.0837745666503906 8 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 41.95555342248728 0.056367691549927025 2 VV{M(Oxidation (M))|F} 3 7 26.198 0 0 2.4725 0 0 696.3890719315265 0 696.3890719315265 0 2.9267405679224368 0 0 0 0 0 0 0 VV{M(Oxidation (M))|F} 2.4725 - 70 + NaN NaN 120625.5 NaN 9733 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12795 58.601 NaN 157760 35 0 32609 0.261 -1 MAYGVEPAL 9 34 483.733785298194 965.453017663188 2 483.73394775390625 MULTI HCD FTMS 0 0 0 12786 36862.92578125 0.7532549436174817 1 -0.032817840576171875 9 Oxidation (M) _M(Oxidation (M))AYGVEPAL_ ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A 16.942295170755138 0.21397866736869717 2 E[PA]{I|L} 4 -1 23.188 0 0 2.4017 0 0 537.2256220007018 0 537.2256220007018 0 16.197887582883936 0 0 0 1 0 0 0 E[PA]{I|L} 2.4017 + + 6 NaN NaN 108284.7 NaN 9734 3059 12786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12797 58.606 NaN 627630 35 0 63371 0.327 + 35857 YYQNYFEKL 9 76 634.3035096882438 1266.5924664432875 2 634.3035888671875 MULTI HCD FTMS 0 0 0 12796 341312.1875 0.16329036150623402 9 -0.25884246826171875 1 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 132.37960578797484 0.0004606598083464779 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 110.98 0 0 8.7624 8.7624 93.083 0 0 0 3.6497064872320806 3.6497064872320806 3.6497064872320806 9.208187539523749 0 3.0356668758921828 2 0.6989700043360187 0.805462187404089 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L};YYN[AG]Y{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}T[VG]{I|L};YYNQY{M(Oxidation (M))|F}T[VG]{I|L};YY[AG]NY{M(Oxidation (M))|F}T[VG]{I|L} 8.7624;8.0354;8.0354;7.8419;7.3119;7.1149;7.1149;6.3183;5.6859;5.5948 +;-;-;-;-;-;-;-;-;- + 471 + NaN NaN 184837.3 NaN 9735 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12798 58.61 NaN 590260 35 0 64831 0.261 + 19862 NYAWVYYHM 9 76 631.7687083198309 1261.5228637064617 2 631.7687377929688 MULTI HCD FTMS 0 0 0 12796 288587.25 0.8890048370268698 -2 0.06240081787109375 2 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 129.2004930540761 0.0006534604433583781 2 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 99.389 0 0 7.8785 7.8785 90.642 0 0 0 8.264837301042718 8.264837301042718 8.264837301042718 8.264837301042718 0 2.6989700043360187 1.6989700043360187 0 1.829689690656103 [YN]AWYVYH{M(Oxidation (M))|F};NYAWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};NYAWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYADAYV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYADAY{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}YAYVYH{M(Oxidation (M))|F};NYAWY[WE][KC];NYA[R{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}D]|MM}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}YTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.8785;7.2234;6.9665;6.2685;5.6993;5.1837;4.2305;4.0511;3.7944;3.3161 -;-;-;-;-;-;-;-;-;- 1256 NaN NaN 179709.3 NaN 9736 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12799 58.614 NaN 572430 35 0 110780 0.264 + 12661 KWFFQKLRF 9 81 433.91680466671517 1298.7285846003456 3 433.9167785644531 MULTI HCD FTMS 0 0 0 12796 188972.390625 0.22768572294566258 14 -0.3757514953613281 3 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 59.368380827593164 0.01846506874148156 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 79.365 0 0 6.111 6.111 88.719 0 0 0 16.478174818886373 10.969100130080562 10.969100130080562 9.208187539523749 0 1.6307196863200843 0 0 0.3494850021680094 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WK{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 6.111;5.4019;5.2664;4.5573;4.3449;3.6359;3.5003;2.7913 +;-;-;-;-;-;-;- + 453 + NaN NaN 171181.9 NaN 9737 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12800 58.617 NaN 423960 35 0 76573 0.261 + 29788 VEGLFFKDLK 10 77 598.3401757698358 1194.6657986064715 2 598.3399658203125 MULTI HCD FTMS 0 0 0 12796 105212.0625 0.3834788147234244 3 -0.08868789672851562 4 Unmodified _VEGLFFKDLK_ ENSG00000144406|ENST00000673920|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80 8.745405648335112 0.42901288225909884 2 SP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 9 9 27.585 0 0 2.309 0 0 165.2377780757991 0 165.2377780757991 0 4.028806450206236 0 0 0 0 0 0.7742275032520141 0 SP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.309 - 154 + NaN NaN 150716.3 NaN 9738 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12801 58.62 NaN 316890 35 0 71354 0.264 + 4025 ERTSSSTI 8 59 440.72126228054947 NaN 0 440.72125244140625 PEAK HCD FTMS 0 0 0 12796 114599.984375 0.06223070182774203 14 -0.3757514953613281 5 Unmodified _ERTSSSTI_ REV__ENSG00000116962|ENST00000264187|NID1;REV__nc|ENSG00000116962|P14543-2|NID1 16.942295170755138 0.3865212393897457 2 V 1 -1 12.985 0 0 1.4765 0 0 186.08069189259987 591.2570501651736 777.3377420577735 0 0 0 0 0 0.75 0 0 0 V 1.4765 - 50 + NaN NaN 134011.1 NaN 9739 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12802 58.624 NaN 1213600 35 0 132370 0.261 + 4681 EYPDRIMNTF 10 86 643.297686036255 1284.5808191393098 2 643.2974243164062 MULTI HCD FTMS 0 0 0 12796 320927.125 0.1196032500339838 -5 0.15620040893554688 6 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 121.50329630698991 3.65857907354071E-05 2 [YE]PDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 77.871 0 0 6.062 6.062 90.207 0 0 0 47.69840541098261 22.18642789064525 22.18642789064525 12.4171144746592 0 2.2346368802282015 1.6989700043360187 1.4674165578762486 0.6747425010840047 + + [YE]PDR{I|L}MNT{M(Oxidation (M))|F};[YE]PDR{I|L}MGGT{M(Oxidation (M))|F};[YE]P[RN][YV]D{[ET]|[MV]};[YE]PD[PA][H{I|L}]N{[ET]|[MV]} 6.062;5.0953;1.8042;1.7337 +;-;-;- + 658 + NaN NaN 282099.5 NaN 9740 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12803 58.627 NaN 787080 35 0 134860 0.263 + 27446 SYVQVTSNF 9 84 522.7535702452954 1043.4925875573906 2 522.7537231445312 MULTI HCD FTMS 0 0 0 12796 225442.546875 0.6927897984136294 -2 0.06240081787109375 7 Unmodified _SYVQVTSNF_ ENSG00000072364|ENST00000265343|AFF4 94.90867108109511 0.004397340885530348 2 SYVQVTSN{M(Oxidation (M))|F} 9 0 + 97.878 0 0 9.3799 9.3799 93.717 0 0 0 79.86518902472534 16.478174818886373 16.478174818886373 9.208187539523749 0 2.610924374808178 1.3979400086720375 0.2614393726401688 0.6861818737241735 + + SYVQVTSN{M(Oxidation (M))|F};SYV[AG]VTSN{M(Oxidation (M))|F};SYVQVTSGG{M(Oxidation (M))|F};SYVQV[NS]T{M(Oxidation (M))|F};SYV[AG]VTSGG{M(Oxidation (M))|F};SYV[AG]V[NS]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[WT]|[RM]}YV[MT] 9.3799;8.4974;7.4316;7.2395;6.5534;6.3571;0.037992 +;-;-;-;-;-;- + 1442 + NaN NaN 208357.7 NaN 9741 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12804 58.63 NaN 769400 35 0 48239 0.261 + 22328 QPKCWHYYL 9 88 619.2939724153129 1236.5733918974256 2 619.3077392578125 MULTI HCD FTMS 0 0 0 12796 47803.53125 0.7570723296238284 -4 0.12662124633789062 8 Unmodified _QPKCWHYYL_ REV__ENSG00000100298|ENST00000442487|APOBEC3H;REV__nc|ENSG00000100298|Q6NTF7-2|APOBEC3H;REV__nc|ENSG00000100298|Q6NTF7-4|APOBEC3H;REV__nc|ENSG00000100298|Q6NTF7|APOBEC3H 16.942295170755138 0.21397866736869717 2 YY{I|L}QTQ{I|L} 7 -1 62.523 0 0 5.0562 0 0 0 324.0795641156754 324.0795641156754 15.135059171916438 0 0 0 0 0 1.6989700043360187 0 1.079689690656103 YY{I|L}QTQ{I|L} 5.0562 - 3408 NaN NaN 212825.2 NaN 9742 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12805 58.634 NaN 353360 35 0 57193 0.261 + 7022 FPYPYAERL 9 62 578.2944664603492 1154.5743799874983 2 578.2963256835938 MULTI HCD FTMS 0 0 0 12796 79988.140625 0.547707765283125 -3 0.10039520263671875 9 Unmodified _FPYPYAERL_ ENSG00000105464|ENST00000263269|GRIN2D 23.789781309258295 0.1548179064208189 2 {I|L}MYPYA 6 5 61.86 0 0 5.3578 0 0 0 413.21467004947505 413.21467004947505 43.90092514408778 0 0 0 0 1 1.5228787452803376 0 0 {I|L}MYPYA 5.3578 - 115 + NaN NaN 134944.9 NaN 9743 3060 12796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12807 58.639 NaN 6058500 35 0 1813900 0.327 + 32013 VYPLMKEYF 9 94 603.2992016658338 1204.5838503984676 2 603.2996826171875 MULTI HCD FTMS 0 0 0 12806 3996410.25 0.9955331406450385 -1 0.03295135498046875 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 118.0683919894846 0.0016252157255221692 2 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 102.67 0 0 8.5233 8.5233 93.847 0 0 0 10.48073498420952 10.48073498420952 10.48073498420952 10.48073498420952 0 2.9802046884880937 2 1.506625672816984 0 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYEVY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F} 8.5233;7.6532;7.4811;6.6301;6.3798;6.1821;6.017;6.0049;5.8763;5.6991 +;+;-;-;-;-;-;-;-;- + 2949 + NaN NaN 676653.6 NaN 9744 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12808 58.643 NaN 849770 35 0 132690 0.261 + 27447 SYVQVTSNF 9 90 522.7535702452954 1043.4925875573906 2 522.753662109375 MULTI HCD FTMS 0 0 0 12806 302250.3125 0.9288217151992797 -1 0.03295135498046875 2 Unmodified _SYVQVTSNF_ ENSG00000072364|ENST00000265343|AFF4 91.08480475639789 0.0044975408722150376 2 {[{M(Oxidation (M))|F}C]|[YS]}VQVTSN{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 75.003 1.7339 0.69332 7.1876 7.1876 65.984 0 0 0 0 61.77108148272637 0 0 0 2.4916440611282624 0 0.6861818737241735 0.6549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}VQVTSN{M(Oxidation (M))|F} 7.1876 + + 1411 + NaN NaN 212883.9 NaN 9745 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12809 58.647 NaN 931930 35 0 70485 0.261 + 35868 YYQSSVQYL 9 91 575.7732004065014 1149.5318478798026 2 575.773193359375 MULTI HCD FTMS 0 0 0 12806 197797.765625 1 0 0 3 Unmodified _YYQSSVQYL_ ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 87.25819977447905 0.004597812622239197 2 [YG]S{M(Oxidation (M))|F}SSVQY{I|L} 10 3 + 77.916 0 0 6.7781 6.7781 85.39 0 0 0 0.39590623023812554 10 0.39590623023812554 0.39590623023812554 0 2.2614393726401687 0 1.4489700043360187 0 [YG]S{M(Oxidation (M))|F}SSVQY{I|L};YYQSSVQY{I|L};[YG]S{M(Oxidation (M))|F}SSV[AG]Y{I|L};YY[AG]SSVQY{I|L};YYQSSV[AG]Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}QVSS{[DS]|[MA]|[CV]|TT}S{M(Oxidation (M))|F};[YT][YN]SVQY{I|L};YY[AG]SSV[AG]Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[AG]VSS{[DS]|[MA]|[CV]|TT}S{M(Oxidation (M))|F};[YT][YN]SV[AG]Y{I|L} 6.7781;6.7436;5.9808;5.9426;5.9426;5.673;5.5669;5.1454;4.8758;4.7659 -;+;-;-;-;-;-;-;-;- + 1454 NaN NaN 229392 NaN 9746 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12810 58.65 NaN 415090 35 0 91613 0.261 -1 TMMCPSPDL 9 77 513.7011502858476 1025.387747638495 2 513.7012939453125 MULTI HCD FTMS 0 0 0 12806 116342.5078125 0.9129363207243539 -1 0.03295135498046875 4 2 Oxidation (M) _TM(Oxidation (M))M(Oxidation (M))CPSPDL_ ENST00000357877.6_1_2:74902100-74902307:+|nuORF 16.942295170755138 0.21397866736869717 2 {I|L}D{I|L} 3 -1 33.065 0 0 3.2246 0 0 666.1787666240948 0 666.1787666240948 0 21.47074875644661 0 0 0 1 0 0.28872548999643577 0 {I|L}D{I|L} 3.2246 - 32 NaN NaN 155258 NaN 9747 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12811 58.653 NaN 282100 35 0 22243 0.261 -1 0 78 497.2351837944791 496.2279073278791 1 498.2370300292969 MULTI HCD FTMS 0 0 0 12806 100374.6015625 0.2822194495134902 -9 0.2743377685546875 5 NaN NaN 2 SQ 2 -1 14.693 0 0 2.9609 0 0 0 278.11396204166255 278.11396204166255 0.08864383480215565 0 0 0 0 0 0 0 0 SQ 2.9609 - 28 + NaN NaN 131674.3 NaN 9748 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12812 58.657 NaN 209730 35 0 19965 0.261 + 20770 PGNFFHVL 8 54 465.7453089605638 929.4760649879277 2 465.7452087402344 MULTI HCD FTMS 0 0 0 12806 58859.6953125 0.3833490542564692 6 -0.17371749877929688 6 Unmodified _PGNFFHVL_ ENSG00000105953|ENST00000222673|OGDH;nc|ENSG00000105953|Q02218-2|OGDH;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant 9.347437153973935 0.5250182646323369 2 QV{I|L} 3 6 30.445 0 0 3.2755 0 0 571.2673585325795 0 571.2673585325795 0 14.960762528683702 0 0 0 0.4247425010840047 0 0 0 QV{I|L} 3.2755 - 36 NaN NaN 114043.7 NaN 9749 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12813 58.66 NaN 176720 35 0 56991 0.261 + -1 VQMTFAML 8 60 478.7326438967411 NaN 0 478.7330627441406 PEAK HCD FTMS 0 0 0 12806 7018.20068359375 0.21276668971977447 -2 0.06576919555664062 7 Oxidation (M) _VQMTFAM(Oxidation (M))L_ REV__VPS13B|p.I929M|1|0.13|ENSG00000132549|chr8:99275217-99275217|C/G|missense_variant 7.289230182591677 0.38822285293237185 2 M 1 -1 5.4846 0 0 0.57403 0 0 114.06941011013801 707.3305147760374 821.3999248861754 0 0 0 0 0 0 0 0 0 M 0.57403 + + 31 + NaN NaN 126964.5 NaN 9750 3061 12806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12815 58.665 NaN 1142500 35 0 186740 0.327 -1 0 100 582.3447276431323 1162.6749023530645 2 582.344970703125 MULTI HCD FTMS 0 0 0 12814 783092.625 0.16592075604302284 7 -0.1996917724609375 1 NaN NaN 2 WV{I|L}DK{I|L} 6 -1 57.612 0 0 4.9552 0 0 390.2257252423844 0 390.2257252423844 0 19.62139643030941 0 0 0 1.805462187404089 0 0.3807196863200844 0 WV{I|L}DK{I|L} 4.9552 - 1807 NaN NaN 265811.4 NaN 9751 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12816 58.669 NaN 644590 35 0 74683 0.261 + 1493 AYTPFHAVL 9 73 509.7714760713858 1017.5283992095716 2 509.77154541015625 MULTI HCD FTMS 0 0 0 12814 252536.796875 0.13754563620054908 7 -0.1996917724609375 2 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 74.39630413441286 0.00766564230304328 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4 5 46.682 0 0 4.5878 0 0 0 582.3013937824958 582.3013937824958 37.859987446469034 0 0 0 0 0.9247425010840047 2 0.4247425010840047 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4.5878 + + 264 + NaN NaN 184535.8 NaN 9752 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12817 58.673 NaN 612640 35 0 89103 0.261 + 29179 TYISWKEEL 9 67 584.797862202494 1167.581171471788 2 584.7980346679688 MULTI HCD FTMS 0 0 0 12814 302202.03125 0.8993950812616 3 -0.08195114135742188 3 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 86.33184430468982 0.004622086694044132 2 [YT]{I|L}SW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L} 9 0 + 87.84 0 0 7.5232 7.5232 96.175 0 0 0 21.76985621489237 71.37394998465425 21.76985621489237 64.53016278251047 0 2 1.6989700043360187 1.6747425010840047 0 + + [YT]{I|L}SW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L};[YN]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L};[YN]{I|L}{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{I|L} 7.5232;1.9964;1.5486 +;-;- + 277 NaN NaN 191145.8 NaN 9753 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12818 58.676 NaN 693720 35 0 90669 0.261 + 18855 NAELWQVSW 9 85 566.7753210247591 1131.5360891163182 2 566.7747802734375 MULTI HCD FTMS 0 0 0 12814 187624.59375 0.6636615027190395 7 -0.1996917724609375 4 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 36.12702656103203 0.08312389501731911 2 SV[YT]SVSW 8 6 63.836 0 0 5.6415 0 0 204.09123245012012 0 204.09123245012012 0 47.89356461388314 0 0 0 0.5 0 1.7689301784845295 0 SV[YT]SVSW 5.6415 - 426 + NaN NaN 195987.5 NaN 9754 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12819 58.68 NaN 406090 35 0 38569 0.261 + 19370 NPDREGWLL 9 81 550.2809887121199 1098.5474244910397 2 550.2807006835938 MULTI HCD FTMS 0 0 0 12814 157140.71875 0.5860256193908927 4 -0.11143875122070312 5 Unmodified _NPDREGWLL_ ENSG00000008256|ENST00000350796|CYTH3;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000108669|ENST00000446868|CYTH1;ENST00000462927.5_1_22:37699411-37707619:+|nuORF;nc|ENSG00000008256|O43739|CYTH3;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000108669|Q15438-2|CYTH1;nc|ENSG00000108669|Q15438-3|CYTH1 27.223235318498237 0.1251536255799991 2 {I|L}{I|L} 2 7 25.969 0 0 2.3639 0 0 854.3670782521849 0 854.3670782521849 0 4.044387449636204 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.3639 + + 187 NaN NaN 151231 NaN 9755 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12820 58.683 NaN 250990 35 0 21964 0.263 + 21648 PYRLIFEKF 9 61 404.8973947492548 1211.6703548479643 3 404.8973083496094 MULTI HCD FTMS 0 0 0 12814 138035.09375 0.22411314146224248 10 -0.2744483947753906 6 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 27.088373467376528 0.12631880205116225 2 PY 2 7 33.443 0 0 2.7601 0 0 0 948.5282293078303 948.5282293078303 2.663755992467536 0 0 0 0 0 1.3979400086720375 0 0 + PY 2.7601 + + 56 + NaN NaN 127591 NaN 9756 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12821 58.686 NaN 333800 35 0 44416 0.261 + 5738 FPAGYMYPSM 10 74 598.243700017282 1194.4728471013639 2 598.2440795898438 MULTI HCD FTMS 0 0 0 12814 74987.03125 0.33820958512195515 15 -0.38814544677734375 7 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 51.81 0 0 4.3375 0 0 535.2438221662125 0 535.2438221662125 0 41.01342204748164 0 0 0 1.774227503252014 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.3375 + + 150 NaN NaN 138956.9 NaN 9757 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12822 58.69 NaN 387910 35 0 24669 0.262 + 22046 QGGQIEFRD 9 75 525.253919781233 1048.4932866292659 2 525.2554321289062 MULTI HCD FTMS 0 0 0 12814 68971.1953125 0.7551646710428396 -5 0.1595458984375 8 Unmodified _QGGQIEFRD_ ENSG00000091262|ENST00000205557|ABCC6 20.453626601364224 0.18364154288633264 2 {[QG]|[NA]}ARA[DG]{[{M(Oxidation (M))|F}D]|MM}{I|L} 10 7 + 46.316 0 0 4.4174 4.4174 83.633 0 0 0 15.125634869672226 17.867909902192366 15.125634869672226 5.206808544614603 0 0 1.6989700043360187 0.4247425010840047 0.6382104921644451 {[QG]|[NA]}ARA[DG]{[{M(Oxidation (M))|F}D]|MM}{I|L};{[QG]|[NA]}AN{I|L}[{M(Oxidation (M))|F}E][RD];{[QG]|[NA]}AN{[RE]|[WV]}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[QG]|[NA]}AGG{I|L}[{M(Oxidation (M))|F}E][RD];{[QG]|[NA]}A[VG]A[{M(Oxidation (M))|F}E][RD];QQRA[DG]{[{M(Oxidation (M))|F}D]|MM}{I|L};QQN{I|L}[{M(Oxidation (M))|F}E][RD];QQN{[RE]|[WV]}{[{M(Oxidation (M))|F}D]|MM}{I|L};QQGG{I|L}[{M(Oxidation (M))|F}E][RD];QQ[VG]A[{M(Oxidation (M))|F}E][RD] 4.4174;3.9208;3.7688;3.0425;2.663;1.9704;1.4789;1.327;0.59556;0.21602 -;-;-;-;-;-;-;-;-;- 446 NaN NaN 148676.2 NaN 9758 3062 12814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12824 58.694 NaN 1782200 35 0 201530 0.327 + 24562 RYLNEFEEL 9 99 606.7980308009771 1211.5815086687542 2 606.7982788085938 MULTI HCD FTMS 0 0 0 12823 920558.125 0.4739486906353034 -3 0.08868789672851562 1 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 96.93554129104106 0.004344229100022454 2 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L} 9 2 + 95.914 0 0 7.9164 7.9164 89.615 0 0 0 5.651464743253257 16.478174818886373 5.651464743253257 5.651464743253257 0 2.1237125054200234 1.154901959985743 0.6549471895720985 1.0994850021680094 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L};[YR]{I|L}NE{M(Oxidation (M))|F}EE{I|L};[Y{I|L}]RGGE{M(Oxidation (M))|F}EE{I|L};[YR]{I|L}GGE{M(Oxidation (M))|F}EE{I|L};[VP][HV]NE{M(Oxidation (M))|F}EE{I|L};[VP][HV]GGE{M(Oxidation (M))|F}EE{I|L};[Y{I|L}]RNEEE{M(Oxidation (M))|F}{I|L};[YR]{I|L}NEEE{M(Oxidation (M))|F}{I|L};[Y{I|L}]RGGEEE{M(Oxidation (M))|F}{I|L};[YR]{I|L}GGEEE{M(Oxidation (M))|F}{I|L} 7.9164;7.45;7.1564;6.6899;6.5548;4.8909;4.4496;3.9832;3.6896;3.2231 -;+;-;-;-;-;-;-;-;- + 3037 NaN NaN 380698.5 NaN 9759 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12825 58.699 NaN 1095000 35 0 215980 0.263 + 21841 QAVEGEIDL 9 75 487.245428655884 972.476304378568 2 487.2454528808594 MULTI HCD FTMS 0 0 0 12823 328064.15625 0.6657165024631323 1 -0.0295562744140625 2 Unmodified _QAVEGEIDL_ ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF 92.65332237495696 0.004456439685314431 2 [{I|L}A]NE{[DA]|[EG]}{I|L}D{I|L} 9 2 + 80.937 0 0 8.3228 8.3228 94.714 0 0 0 8.696662315049934 53.61322609243169 8.696662315049934 15.116844262069677 0 1.805462187404089 1.3979400086720375 0.9916440611282626 1.2154243254584296 [{I|L}A]NE{[DA]|[EG]}{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}[QA]{[DA]|[EG]}{I|L}D{I|L};[QA]VE{[DA]|[EG]}{I|L}D{I|L};[{I|L}A]GGE{[DA]|[EG]}{I|L}D{I|L};[DP][KS]{[DA]|[EG]}{I|L}D{I|L};[{I|L}A]NE[R{M(Oxidation (M))|F}][HS];[{I|L}A]NE{[NV]|[RG]}[WQ];{[DS]|[MA]|[CV]|TT}[KP]{[DA]|[EG]}{I|L}D{I|L};[{I|L}A]N{[NV]|[RG]}E[WQ];{NN|[MP]|[D{I|L}]|[EV]}[QA][R{M(Oxidation (M))|F}][HS] 8.3228;6.7684;6.3258;6.1261;4.1589;2.6904;2.6904;2.5412;1.8648;1.136 -;-;+;-;-;-;-;-;-;- + 378 NaN NaN 250411.2 NaN 9760 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12826 58.702 NaN 724760 35 0 75450 0.261 + 17033 LYIVHPTMF 9 99 568.7941333700435 1135.5737138068869 2 568.7942504882812 MULTI HCD FTMS 0 0 0 12823 208384.15625 0.7334396268113419 -1 0.029537200927734375 3 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 104.79918948944588 0.003791450360204016 2 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 98.515 0 0 8.6753 8.6753 96.31 0 0 0 53.620389711443565 14.973024840566467 14.973024840566467 25.37544488394515 0 2.56295299324845 2 0.7302046884880937 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}HPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{I|L}{I|L}HPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V[W{M(Oxidation (M))|F}][YV]{M(Oxidation (M))|F};{I|L}[WQ]VVPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]NAA[NG]VK{[QD]|[EN]|[WG]|[KD]|[RS]};[YG]QQ[NG]VK{[QD]|[EN]|[WG]|[KD]|[RS]};[YG]NAA[RN]K{[QD]|[EN]|[WG]|[KD]|[RS]} 8.6753;6.4408;5.65;4.602;3.85;2.7415;2.2644;1.8682;1.2891;1.1802 +;+;-;-;-;-;-;-;-;- + 1588 + NaN NaN 207609.1 NaN 9761 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12827 58.706 NaN 486750 35 0 92533 0.263 + 12662 KWFFQKLRF 9 81 433.91680466671517 1298.7285846003456 3 433.9168701171875 MULTI HCD FTMS 0 0 0 12823 156304.3125 0.18832518482400537 17 -0.4231109619140625 4 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 76.82478488871298 0.006879825292024087 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 77.737 0 0 5.9856 5.9856 86.381 0 0 0 16.478174818886373 10.45880017344075 10.45880017344075 6.020599913279625 0 1.4876954943324545 0 0 0.6307196863200843 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];K{M(Oxidation (M))|F}W{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}KW{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F} 5.9856;5.522;5.2766;5.1803;4.813;4.7167;4.7073;4.4713;4.0077;3.9983 +;-;-;-;-;-;-;-;-;- + 621 + NaN NaN 164136.4 NaN 9762 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12828 58.709 NaN 346610 35 0 39269 0.261 + 29453 TYTVKIVAI 9 68 504.31014988315945 1006.6057468331189 2 504.3102722167969 MULTI HCD FTMS 0 0 0 12823 132638.875 0.7717177223145001 1 -0.0295562744140625 5 Unmodified _TYTVKIVAI_ ENSG00000046604|ENST00000261590|DSG2 69.10491478415734 0.009377850133389008 2 [YT]TVK{I|L}VA{I|L} 9 0 + 64.961 0 0 6.4535 6.4535 94.244 0 0 0 47.00250284594654 9.137342758552698 9.137342758552698 64.96130301938729 0 1.916386562212267 2 0.4247425010840047 0 + + [YT]TVK{I|L}VA{I|L} 6.4535 + + 87 + NaN NaN 136722.4 NaN 9763 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12829 58.712 NaN 277340 35 0 27307 0.261 + 32671 WPDDLQNHTF 10 63 636.7859328276808 1271.5573127221614 2 636.7855834960938 MULTI HCD FTMS 0 0 0 12823 82326.4296875 0.8139281593583352 -3 0.08868789672851562 6 Unmodified _WPDDLQNHTF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000475627.1_1_6:32918275-32920806:-|nuORF;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 59.05245873256422 0.044867740978679724 2 WPDD{I|L}QNHT{M(Oxidation (M))|F} 10 0 + 65.79 0 0 5.174 5.174 86.352 0 0 0 44.82091120474428 11.266485927408759 11.266485927408759 9.16453948549924 0 1.2302046884880937 0 1.4436726795685342 0 + + WPDD{I|L}QNHT{M(Oxidation (M))|F};WPDD{I|L}[AG]NHT{M(Oxidation (M))|F};WPDD{I|L}QGGHT{M(Oxidation (M))|F};WPDD{I|L}[AG]GGHT{M(Oxidation (M))|F};WPDD{I|L}Q{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ];WPDD{I|L}[AG]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HQ];WPDD{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}T][HQ];[WP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}D{[HG]|PP}{[DA]|[EG]} 5.174;4.4532;4.4532;3.7353;3.7191;2.9983;2.2181;1.6185 +;-;-;-;-;-;-;- + 257 + NaN NaN 128148.1 NaN 9764 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12830 58.716 NaN 260310 35 0 51639 0.261 -1 DFVMSLTFPF 10 68 610.2888939467254 1218.5632349602506 2 610.2892456054688 MULTI HCD FTMS 0 0 0 12823 32713.984375 0.3806823388573648 6 -0.17015457153320312 7 Oxidation (M) _DFVM(Oxidation (M))SLTFPF_ ENSG00000174944|ENST00000309170|P2RY14 10.823927491677226 0.4098686510432541 2 P{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.0076 0 0 956.4314694661211 0 956.4314694661211 0 15.806525308027018 0 0 0 0.3494850021680094 0 0 0 P{M(Oxidation (M))|F} 2.0076 + + 18 NaN NaN 126797.2 NaN 9765 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12831 58.719 NaN 325610 35 0 28011 0.262 -1 IPDEQIVVM 9 86 530.2729557672837 1058.5313586013674 2 530.27294921875 MULTI HCD FTMS 0 0 0 12823 58055.03515625 0.3739222188072441 -11 0.3300743103027344 8 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 17.11289562659939 0.2125047172822487 2 {I|L}VV{M(Oxidation (M))|F} 4 -1 43.928 0 0 4.1499 0 0 582.2648182599625 0 582.2648182599625 0 20.11053454815091 0 0 0 1.5 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.1499 + + 455 NaN NaN 138614.6 NaN 9766 3063 12823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12833 58.724 NaN 611810 35 0 67468 0.327 + 18976 NAQGLRYLI 9 74 524.3014109161496 NaN 0 524.2827758789062 PEAK HCD FTMS 0 0 0 12832 6775.29638671875 0.3701589229922147 2 -0.05234527587890625 1 Unmodified _NAQGLRYLI_ REV__tr|U7T3P7|U7T3P7_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00486PE=4SV=1 23.1484247019978 0.16626532474190622 2 RE{M(Oxidation (M))|F}{I|L}NA 6 -1 41.592 0 0 3.974 0 0 131.1329654008835 182.05698572330314 313.1899511241867 0 0 0 0 0 0 0 0 1.947621246364342 RE{M(Oxidation (M))|F}{I|L}NA 3.974 - 423 + NaN NaN 181340 NaN 9767 3064 12832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12834 58.728 NaN 1140000 35 0 258330 0.262 + 2817 DYKRLFFRF 9 74 431.23621914948706 1290.6868280486613 3 431.236328125 MULTI HCD FTMS 0 0 0 12832 300954.90625 0.6886464218235232 -2 0.059093475341796875 2 Unmodified _DYKRLFFRF_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 45.739877483867886 0.03899552410870734 2 DYKR{I|L}{M(Oxidation (M))|F} 6 3 74.469 0 0 5.7697 0 0 0 465.22623162812334 465.22623162812334 49.25250945692483 0 0 0 0 0.3252574989159953 2 0 0.7059771852360797 + DYKR{I|L}{M(Oxidation (M))|F} 5.7697 + + 45 + NaN NaN 255974.6 NaN 9768 3064 12832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12835 58.732 NaN 321520 35 0 22575 0.261 + 35674 YYITTRVQF 9 63 595.8133480655082 1189.6121431978163 2 595.813720703125 MULTI HCD FTMS 0 0 0 12832 112121.703125 0.954167561723698 1 -0.022857666015625 3 Unmodified _YYITTRVQF_ ENSG00000000938|ENST00000374005|FGR 76.82478488871298 0.006879825292024087 2 YY{I|L}TTRVQ{M(Oxidation (M))|F} 9 0 + 77.8 0 0 6.54 6.54 93.642 0 0 0 51.60248924081584 10.884767769392738 10.884767769392738 38.04358482999213 0 2.4876954943324545 1.6989700043360187 0 0.7059771852360797 + + YY{I|L}TTRVQ{M(Oxidation (M))|F};YY{I|L}[{I|L}P][HQ]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[RE]|[WV]}[PG]TT[VG]VQ{M(Oxidation (M))|F};{[RE]|[WV]}D[Q{I|L}][VG]VQ{M(Oxidation (M))|F} 6.54;3.342;2.426;0.80911 +;-;-;- + 235 + NaN NaN 133710.9 NaN 9769 3064 12832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12836 58.735 NaN 165760 35 0 14755 0.261 + 32098 VYRVYVATF 9 49 559.305703509246 1116.5968540852919 2 559.3060302734375 MULTI HCD FTMS 0 0 0 12832 78255.546875 0.31026886162196665 6 -0.1633148193359375 4 Unmodified _VYRVYVATF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 30.636539890814138 0.10832830463492794 2 VYVVAT{M(Oxidation (M))|F} 7 2 67.779 0 0 6.0701 0 0 319.153123924025 0 319.153123924025 0 60.78926674489949 0 0 0 1.305462187404089 0 0.4247425010840047 0 VYVVAT{M(Oxidation (M))|F} 6.0701 - 138 NaN NaN 111280.2 NaN 9770 3064 12832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12837 58.739 NaN 335740 35 0 28766 0.261 + 29304 TYNDQSITF 9 70 544.7483426255733 1087.4821323179465 2 544.748046875 MULTI HCD FTMS 0 0 0 12832 121667.8984375 0.4148993925337621 -9 0.274444580078125 5 Unmodified _TYNDQSITF_ ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-3|IL33 63.960520009940105 0.0120409805053046 2 [YT]NDQS{I|L}T{M(Oxidation (M))|F} 9 0 + 62.029 0 0 5.704 5.704 90.218 0 0 0 15.091277745218932 52.15252306205551 15.091277745218932 14.955678082598922 0 2.1122731327798547 1.3979400086720375 0.7059771852360797 0.8494850021680094 + + [YT]NDQS{I|L}T{M(Oxidation (M))|F};[YT]NDK{[CP]|[EA]}T{M(Oxidation (M))|F} 5.704;4.3287 +;- + 91 NaN NaN 135519.2 NaN 9771 3064 12832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12838 58.742 NaN 282230 35 0 36386 0.261 + 17693 MANVELSSL 9 70 490.2419010560655 978.469249178931 2 490.2420654296875 MULTI HCD FTMS 0 0 0 12832 68234.8203125 0.5623614105920409 2 -0.05234527587890625 6 Oxidation (M) _M(Oxidation (M))ANVELSSL_ ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E 43.77239144664712 0.04802738721622131 2 {[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L} 9 3 + 55.212 0 0 5.6426 5.6426 91.872 0 0 0 2.983368894626288 40.60743511991397 2.983368894626288 33.794482255454525 0 1.4247425010840047 0 0.4247425010840047 0.805462187404089 {[CA]|SS}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}SS{I|L};{[CA]|SS}{I|L}[MD]{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L} 5.6426;2.1888 -;- 74 NaN NaN 126950.7 NaN 9772 3064 12832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12840 58.747 NaN 508220 35 0 59723 0.327 + 19863 NYAWVYYHM 9 66 631.7687083198309 1261.5228637064617 2 631.7686767578125 MULTI HCD FTMS 0 0 0 12839 241469.828125 0.7438576901757507 3 -0.084991455078125 1 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 114.94377779790601 0.0021353177819039447 2 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 99.389 0 0 7.8785 7.8785 93.216 0 0 0 24.005149978319906 16.478174818886373 16.478174818886373 11.817496819840656 0 2.6237125054200234 1.6989700043360187 0 1.9049471895720984 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[MG]|[TS]}VYADA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]ADAY{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}YAYVYH{M(Oxidation (M))|F};{[WN]|[YH]}YTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWY[WE][KC];[WY]NAYVYH{M(Oxidation (M))|F};[MT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[HA]YH{M(Oxidation (M))|F} 7.8785;6.9418;5.5556;4.9865;4.4956;4.2057;3.6123;3.3575;2.7204;2.4733 -;-;-;-;-;-;-;-;-;- 1088 NaN NaN 164746 NaN 9773 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12841 58.751 NaN 514930 35 0 35227 0.261 + 35858 YYQNYFEKL 9 91 634.3035096882438 1266.5924664432875 2 634.3032836914062 MULTI HCD FTMS 0 0 0 12839 163169.21875 0.0780633147369731 14 -0.3545722961425781 2 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 114.18643581695662 0.002258955990713129 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 101.08 0 0 7.9805 7.9805 92.026 0 0 0 76.92348741261036 8.697114610913488 8.697114610913488 9.208187539523749 0 2.5356668758921828 2 0.6505149978319906 0.7614393726401688 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{I|L};YY[AG]NY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{I|L};YYQGGY{M(Oxidation (M))|F}{[VA]|[{I|L}G]}S{I|L};[{M(Oxidation (M))|F}E][WP][DG]{M(Oxidation (M))|F}EK{I|L} 7.9805;7.2535;7.2535;6.5299;6.4226;5.699;5.3985;2.1288 +;-;-;-;-;-;-;- + 351 + NaN NaN 167560.5 NaN 9774 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12842 58.755 NaN 502500 35 0 102100 0.264 + 15412 LPDITHLRTGL 11 69 412.5749655929722 1234.7030673791166 3 412.5749206542969 MULTI HCD FTMS 0 0 0 12839 130160.1875 0.7104600435030608 3 -0.084991455078125 3 Unmodified _LPDITHLRTGL_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 18.3397198061782 0.2972878317988595 2 {I|L}PD 3 8 41.726 0 0 3.3795 0 0 0 906.517158611461 906.517158611461 34.736607226101555 0 0 0 0 0.6989700043360187 0.8538719643217619 0 0 + {I|L}PD 3.3795 + + 27 + NaN NaN 155677.8 NaN 9775 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12843 58.758 NaN 510640 35 0 48631 0.261 + 35869 YYQSSVQYL 9 89 575.7732004065014 1149.5318478798026 2 575.77294921875 MULTI HCD FTMS 0 0 0 12839 112655.953125 0.5695511916882908 4 -0.11774063110351562 4 Unmodified _YYQSSVQYL_ ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 57.24910588100465 0.021429789259086996 2 [YG]S{M(Oxidation (M))|F}SSVQY{I|L} 10 3 + 74.461 0 0 6.4775 6.4775 85.584 0 0 0 1.9222038005702302 8.732040608115454 1.9222038005702302 1.9222038005702302 0 2.1861818737241734 0 0.75 0.3494850021680094 [YG]S{M(Oxidation (M))|F}SSVQY{I|L};[YT][YN]SVQY{I|L};[YT][YN]SV[AG]Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}QVSS{[DS]|[MA]|[CV]|TT}S{M(Oxidation (M))|F};[YG]S{M(Oxidation (M))|F}SSV[AG]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]SSVQY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[AG]VSS{[DS]|[MA]|[CV]|TT}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]SSV[AG]Y{I|L};[YG]S{M(Oxidation (M))|F}SSV{I|L}[YQ];[YT][YN]SV{I|L}[YQ] 6.4775;6.3103;5.5092;5.4827;5.3762;5.1082;4.6855;4.0069;3.6784;3.5112 -;-;-;-;-;-;-;-;-;- 1020 NaN NaN 168688.9 NaN 9776 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12844 58.761 NaN 280320 35 0 73497 0.261 + 24947 RYSVFVNEL 9 51 563.7983311112429 1125.5821092892857 2 563.798095703125 MULTI HCD FTMS 0 0 0 12839 93714.71875 1 0 0 5 Unmodified _RYSVFVNEL_ ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2 30.7034409873982 0.10802119112323902 2 {M(Oxidation (M))|F}VNE{I|L} 5 4 48.954 0 0 4.3492 0 0 505.2655398749829 0 505.2655398749829 0 43.011525224473814 0 0 0 1.25 0 0 0 + {M(Oxidation (M))|F}VNE{I|L} 4.3492 + + 51 NaN NaN 125285.2 NaN 9777 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12845 58.765 NaN 232590 35 0 20107 0.261 + 27439 SYVNHLYVI 9 74 554.2950036445505 1106.575454355901 2 554.294921875 MULTI HCD FTMS 0 0 0 12839 95757.9609375 1 0 0 6 Unmodified _SYVNHLYVI_ ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5 19.256988751693697 0.19398022840297344 2 V{I|L} 2 7 25.969 0 0 2.3468 0 0 876.4130131154313 0 876.4130131154313 0 6.505149978319906 0 0 0 0.5 0 0 0 + V{I|L} 2.3468 + + 108 NaN NaN 121772.1 NaN 9778 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12846 58.768 NaN 241090 35 0 33833 0.261 + 6069 FPEDLDEF 8 54 506.219503662998 1010.4244543927961 2 506.2327880859375 MULTI HCD FTMS 0 0 0 12839 8962.4736328125 0.3019234053965283 3 -0.084991455078125 7 Unmodified _FPEDLDEF_ tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1 2.577480529830294 0.5381683276125971 2 Y 1 8 6.9897 0 0 0.69176 0 0 131.06450460675677 713.2717898002439 844.3362944070007 0 0 0 0 0 0 0 0 0 Y 0.69176 - 18 + NaN NaN 117148.2 NaN 9779 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12847 58.771 NaN 237030 35 0 12139 0.261 + 11337 IYNDTKFIY 9 80 588.8005820977656 1175.5866112623312 2 588.8023681640625 MULTI HCD FTMS 0 0 0 12839 9709.3232421875 0.004277750311408666 34 -0.8721656799316406 8 Unmodified _IYNDTKFIY_ ENSG00000076356|ENST00000367033|PLXNA2 15.847184025352803 0.2234401846867398 2 D{I|L}Q 3 7 10.177 0 0 0.86572 0 0 258.12422220158743 558.2853487604124 816.4095709619999 0 0 0 0 0 0 0 0 0 D{I|L}Q 0.86572 - 40 + NaN NaN 131054.6 NaN 9780 3065 12839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12849 58.776 NaN 4401900 35 0 1266100 0.327 + 32014 VYPLMKEYF 9 94 603.2992016658338 1204.5838503984676 2 603.299560546875 MULTI HCD FTMS 0 0 0 12848 3047524.75 0.759159269387067 4 -0.11096954345703125 1 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 118.0683919894846 0.0016252157255221692 2 VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 99.809 0 0 8.2858 8.2858 90.658 0 0 0 6.778259348524358 6.778259348524358 6.778259348524358 6.778259348524358 0 3.004432191740108 2 1.2474250108400469 0 + + VYP{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P]Y[DP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P]YV{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KYEVY{M(Oxidation (M))|F} 8.2858;7.7231;7.2414;6.4921;6.1983;6.0697;6.0294;6.0104;5.967;5.9659 +;+;-;-;-;-;-;-;-;- + 4976 + NaN NaN 766694.9 NaN 9781 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12850 58.781 NaN 4206000 35 0 419430 0.261 + 4682 EYPDRIMNTF 10 120 643.297686036255 1284.5808191393098 2 643.2979125976562 MULTI HCD FTMS 0 0 0 12848 2658569.25 0.9907966574667404 1 -0.03607940673828125 2 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 182.23686146844372 3.728908619330263E-16 2 EYPDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 100.89 0 0 7.8541 7.8541 94.248 0 0 0 19.707024078200035 19.707024078200035 19.707024078200035 16.4665863703802 0 2.278659694992122 1.6989700043360187 2.0743923658886185 1.3539171939081172 + + EYPDR{I|L}MNT{M(Oxidation (M))|F};EYPDR{I|L}MGGT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MNT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MGGT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}PAA[TA]MNT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}P[NS]{I|L}MA[SG]{M(Oxidation (M))|F};{[QS]|[NT]}[PA][YN]{I|L}MNT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]NP[NS]{I|L}MNT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]NP[NS]{I|L}MGGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]GGP[NS]{I|L}MNT{M(Oxidation (M))|F} 7.8541;6.5722;6.32;5.6093;5.1958;5.0454;4.8699;4.5189;3.8083;3.5836 +;-;-;-;-;-;-;-;-;- + 6517 + NaN NaN 728354.5 NaN 9782 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12851 58.784 NaN 648280 35 0 44745 0.261 + 35745 YYLQGGFNKF 10 92 618.8059480138544 1235.5973430945087 2 618.8057861328125 MULTI HCD FTMS 0 0 0 12848 365223.46875 0.6387238738422152 4 -0.11096954345703125 3 Unmodified _YYLQGGFNKF_ ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000164086|Q16829-2|DUSP7 118.89474601620944 4.021404175452203E-05 2 YY{I|L}QN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F} 9 2 + 98.36 0 0 7.9605 7.9605 91.995 0 0 0 14.450214375402112 12.698405410982616 12.698405410982616 9.208187539523749 0 2.5356668758921828 2 0 1.0941876774005248 YY{I|L}QN{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QN{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QN{M(Oxidation (M))|F}N{M(Oxidation (M))|F}K;YY{I|L}[AG]N{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}N{M(Oxidation (M))|F}K;YY{I|L}QN{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}K 7.9605;7.2153;7.2153;7.2153;6.9328;6.4736;6.4736;6.2399;6.1876;6.1876 -;-;-;+;-;-;-;-;-;- + 2728 NaN NaN 186166.7 NaN 9783 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12852 58.788 NaN 521770 35 0 36628 0.261 + 35859 YYQNYFEKL 9 80 634.3035096882438 1266.5924664432875 2 634.8058471679688 MULTI HCD FTMS 0 0 0 12848 121320.171875 0.08546902487550535 15 -0.3706817626953125 4 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 93.93812099017352 0.0044227730261779084 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 99.875 0 0 7.8853 7.8853 91.86 0 0 0 78.90600959017256 9.889917747712644 9.889917747712644 9.208187539523749 0 2.6549471895720984 2 0.6505149978319906 0.4247425010840047 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YYNQY{M(Oxidation (M))|F}EK{I|L};YYGGQY{M(Oxidation (M))|F}EK{I|L};YYQNY{M(Oxidation (M))|F}{I|L}{I|L}[SG];YYNQY{M(Oxidation (M))|F}{I|L}{I|L}[SG] 7.8853;7.1583;7.1583;6.4348;6.2211;5.4941;3.835;3.0635 +;-;-;-;-;-;-;- + 278 + NaN NaN 170430.2 NaN 9784 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12853 58.791 NaN 295380 35 0 43657 0.261 + 7023 FPYPYAERL 9 55 578.2944664603492 1154.5743799874983 2 578.2952880859375 MULTI HCD FTMS 0 0 0 12848 125940.5078125 0.8623602643295764 3 -0.08825302124023438 5 Unmodified _FPYPYAERL_ ENSG00000105464|ENST00000263269|GRIN2D 29.84058131909904 0.11198220037953927 2 AYPYPE 6 5 49.686 0 0 4.3034 0 0 416.2390309064469 0 416.2390309064469 0 39.2279848331593 0 0 0 1.305462187404089 0 0 0 AYPYPE 4.3034 - 81 NaN NaN 132536.3 NaN 9785 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12854 58.794 NaN 507290 35 0 38367 0.261 + 7000 FPWGDGNHTL 10 95 572.2645186509936 1142.5144843687872 2 572.7528686523438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 40.72490554402381 0.1391161235525472 2 {I|L}M[VS][WY]PT{M(Oxidation (M))|F} 9 9 + 55.869 0 0 4.89 4.89 82.188 0 0 0 8.96713777483761 0.11506758977826337 0.11506758977826337 0.11506758977826337 0 0.8807196863200843 1.3010299956639813 1.1989700043360187 0 {I|L}M[VS][WY]PT{M(Oxidation (M))|F};{I|L}MWG[YE]MT{I|L};{I|L}MWG[YE]{I|L}[MT];{I|L}M{[DA]|[EG]}[WY]MT{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[HS][KS]WPE;{I|L}M{[DA]|[EG]}[WY]{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[DA]|[EG]}M{I|L};{M(Oxidation (M))|F}P[VS][WY]MT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};{M(Oxidation (M))|F}P[VS][WY]{I|L}[MT] 4.89;4.8799;4.2736;4.228;4.1051;3.6216;2.7649;2.7175;2.6108;2.1111 -;-;-;-;-;-;-;-;-;- 1066 + NaN NaN 173917.9 NaN 9786 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12855 58.798 NaN 270290 35 0 56831 0.263 + 23085 REMAGVAF 8 70 440.72126228054947 NaN 0 440.7209777832031 PEAK HCD FTMS 0 0 0 12848 123858.5234375 0.06725832366295609 20 -0.4980049133300781 7 Unmodified _REMAGVAF_ REV__ENSG00000159131|ENST00000381815|GART;REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF 14.581692164780916 0.38795613832665576 2 C 1 -1 10.485 0 0 1.1922 0 0 594.2807375964521 179.1187685602172 773.3995061566693 0 0 0 0 0 0.5 0 0 0 C 1.1922 - 22 + NaN NaN 125736.4 NaN 9787 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12856 58.801 NaN 557280 35 0 61213 0.261 + 19464 NPSVREFVL 9 84 530.7929050215179 1059.5712571098356 2 530.8117065429688 MULTI HCD FTMS 0 0 0 12848 49587.8984375 0.0025299256325184167 86 -2.276824951171875 8 Unmodified _NPSVREFVL_ ENSG00000131203|ENST00000518237|IDO1 20.41453444215458 0.18397929046831515 2 {I|L}VV{M(Oxidation (M))|F} 4 7 28.443 0 0 2.6844 0 0 583.3046383127638 0 583.3046383127638 0 -4.921525057367404 -4.921525057367404 0 0 0 0 0 0 {I|L}VV{M(Oxidation (M))|F} 2.6844 - 599 + NaN NaN 173021.5 NaN 9788 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12857 58.804 NaN 140400 35 0 10595 0.261 + 4854 FADGHVLEL 9 55 500.7586364746094 NaN 0 500.7586364746094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _FADGHVLEL_ ENSG00000010322|ENST00000345716|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH 15.847184025352803 0.21527282152051216 2 E 1 8 11.237 0 0 1.1243 0 0 131.09250049119538 736.3413790338499 867.4338795250453 0 0 0 0 0 0.4247425010840047 0 0 0 + E 1.1243 + + 10 + NaN NaN 115370.8 NaN 9789 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12858 58.808 NaN 144170 35 0 11937 0.261 + 12849 KYFGDPFEEL 10 48 622.7932963070427 1243.5720396808854 2 622.792724609375 MULTI HCD FTMS 0 0 0 12848 51870.7578125 0.7229244817492371 -2 0.05234527587890625 10 Unmodified _KYFGDPFEEL_ REV__ENSG00000136925|ENST00000341170|TSTD2;REV__ENST00000375165.5_1_9:100366979-100380093:-|nuORF;REV__nc|ENSG00000136925|Q5T7W7-2|TSTD2 14.405379775768559 0.37636895476610294 2 EE{M(Oxidation (M))|F} 3 -1 18.188 0 0 1.4625 0 0 131.09924580006037 704.3001192682249 835.3993650682853 0 0 0 0 0 0.3494850021680094 0 0 0 EE{M(Oxidation (M))|F} 1.4625 - 10 + NaN NaN 112968.6 NaN 9790 3066 12848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12860 58.812 NaN 1369000 35 0 592350 0.327 + 445 ALIAQLTPF 9 72 487.2893296108616 972.5641062885232 2 487.2892761230469 MULTI HCD FTMS 0 0 0 12859 513723.09375 1 0 0 1 Unmodified _ALIAQLTPF_ REV__ENSG00000069122|ENST00000283296|ADGRF5;REV__nc|ENSG00000069122|Q8IZF2-2|ADGRF5;REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5 34.40172386719151 0.0910440009062557 2 [{I|L}A]NEW{I|L}D 7 -1 57.057 0 0 5.8667 0 0 0 128.1602475752109 128.1602475752109 37.315534464597704 0 0 0 0 0.5 2 0.9361818737241735 0 [{I|L}A]NEW{I|L}D 5.8667 - 461 NaN NaN 292536.8 NaN 9791 3067 12859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12861 58.817 NaN 859480 35 0 134080 0.261 -1 0 96 582.3447276431323 1162.6749023530645 2 582.3447875976562 MULTI HCD FTMS 0 0 0 12859 445318.875 0.09435364612229413 12 -0.2890052795410156 2 NaN NaN 2 D{I|L}{[RE]|[WV]}MK{I|L} 7 -1 51.436 0 0 4.4239 0 0 259.1891346662125 0 259.1891346662125 0 26.804596027372156 0 0 0 1.3807196863200843 0 1.2302046884880937 0.28872548999643577 D{I|L}{[RE]|[WV]}MK{I|L} 4.4239 - 1062 NaN NaN 221917.4 NaN 9792 3067 12859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12862 58.82 NaN 449810 35 0 20561 0.261 + 7630 FYINGQNQI 9 95 548.7742447332114 1095.5339365332227 2 549.2855834960938 MULTI HCD FTMS 0 0 0 12859 44177.359375 0.8417908745804686 -3 0.0884246826171875 3 Unmodified _FYINGQNQI_ ENSG00000137975|ENST00000370565|CLCA2 67.34385681178166 0.00994769994983633 2 {I|L}[WR]SPQ 6 7 36.392 0 0 3.3219 0 0 310.1312130053222 0 310.1312130053222 0 10.871804965004642 0 0 0 0.5 0 0.6382104921644451 0.2614393726401688 {I|L}[WR]SPQ 3.3219 - 483 NaN NaN 158443.2 NaN 9793 3067 12859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12863 58.824 NaN 220070 35 0 23196 0.261 + 2161 DHSWDYGF 8 59 513.7011502858476 1025.387747638495 2 513.7013549804688 MULTI HCD FTMS 0 0 0 12859 72095.7421875 0.56573322038599 5 -0.12693023681640625 4 Unmodified _DHSWDYGF_ REV__nc|ENSG00000290584|Q9P1P4|TAAR3P 2.8892196856762586 0.5377058178582064 2 [YT]{I|L}{I|L} 4 -1 28.672 0 0 2.7962 0 0 0 532.08669718367 532.08669718367 15.484550065040281 0 0 0 0 0 1.6989700043360187 0 0 [YT]{I|L}{I|L} 2.7962 - 39 NaN NaN 124512.6 NaN 9794 3067 12859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12864 58.827 NaN 137840 35 0 14279 0.261 + 14550 LFGRSGFF 8 48 465.7453089605638 929.4760649879277 2 465.7700500488281 MULTI HCD FTMS 0 0 0 12859 34845.171875 0.22694415274773888 12 -0.2890052795410156 5 Unmodified _LFGRSGFF_ REV__ENSG00000178878|ENST00000356591|APOLD1;REV__nc|ENSG00000178878|Q96LR9|APOLD1 2.8892196856762586 0.5377058178582064 2 QV{I|L} 3 -1 26.198 0 0 2.8186 0 0 571.2655823660145 0 571.2655823660145 0 10.713337517843655 0 0 0 0 0 0 0 QV{I|L} 2.8186 - 18 NaN NaN 113740.8 NaN 9795 3067 12859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12866 58.832 NaN 2116600 35 0 227810 0.327 + 24563 RYLNEFEEL 9 106 606.7980308009771 1211.5815086687542 2 606.7982788085938 MULTI HCD FTMS 0 0 0 12865 1271778.75 0.6547743775987017 2 -0.0554656982421875 1 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 128.93241758739586 0.0006697181619526092 2 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L} 9 2 + 100.45 0 0 8.2904 8.2904 90.162 0 0 0 5.651464743253257 16.478174818886373 5.651464743253257 5.651464743253257 0 2.1237125054200234 1.0969100130080565 1.1445990182825423 1.0629529932484498 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L};[YR]{I|L}NE{M(Oxidation (M))|F}EE{I|L};[Y{I|L}]RGGE{M(Oxidation (M))|F}EE{I|L};[VP][HV]NE{M(Oxidation (M))|F}EE{I|L};[YR]{I|L}GGE{M(Oxidation (M))|F}EE{I|L};[Y{I|L}]RNEE{M(Oxidation (M))|F}E{I|L};[YR]{I|L}NEE{M(Oxidation (M))|F}E{I|L};[Y{I|L}]RGGEE{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[YN]R{M(Oxidation (M))|F}EE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[R{M(Oxidation (M))|F}]E{M(Oxidation (M))|F}EE{I|L} 8.2904;7.824;7.5304;7.0741;7.0639;6.7919;6.3255;6.0319;5.7409;5.6075 -;+;-;-;-;-;-;-;-;- + 8719 NaN NaN 410887.4 NaN 9796 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12867 58.836 NaN 606570 35 0 72608 0.262 + 9657 HVESILHLA 9 78 509.7877981919953 NaN 0 509.7712707519531 PEAK HCD FTMS 0 0 0 12865 27525.578125 1 0 0 2 Unmodified _HVESILHLA_ DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;nc|ENSG00000183914|Q9P225-3|DNAH2 9.347437153973935 0.2499504662953367 2 CTP 3 9 22.937 0 0 2.2541 0 0 131.12856412083607 582.3048189752561 713.4333830960923 0 0 0 0 0 0.28872548999643577 0 0.9247425010840047 0 CTP 2.2541 - 440 + NaN NaN 177311.2 NaN 9797 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12868 58.84 NaN 205600 35 0 47631 0.261 + 2363 DPEEDAPVL 9 47 492.7293832970519 983.4442136609039 2 492.72930908203125 MULTI HCD FTMS 0 0 0 12865 75883.5625 0.5014597067452556 1 -0.032749176025390625 3 Unmodified _DPEEDAPVL_ ENSG00000174231|ENST00000304992|PRPF8 15.847184025352803 0.2234401846867398 2 APV{I|L} 4 5 37.18 0 0 3.7806 0 0 585.1935902326187 0 585.1935902326187 0 35.92141542771227 0 0 0 0.8252574989159953 0 0 0 + APV{I|L} 3.7806 + + 12 NaN NaN 117618.5 NaN 9798 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12869 58.843 NaN 237930 35 0 10741 0.261 + 32089 VYRDISMSL 9 73 542.277639801268 NaN 0 542.2783203125 PEAK HCD FTMS 0 0 0 12865 57203.41015625 0.4529791489577572 -4 0.10784912109375 4 Unmodified _VYRDISMSL_ REV__ENSG00000278870|ENST00000623849|OR51G1 26.268140514670165 0.145325121643443 2 SN 2 -1 19.222 0 0 1.7756 0 0 131.09594929670828 747.3455904596311 878.4415397563394 0 0 0 0 0 0.5 0 0.3252574989159953 0 SN 1.7756 - 96 + NaN NaN 126824.3 NaN 9799 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12870 58.846 NaN 263500 35 0 30865 0.261 + 29180 TYISWKEEL 9 67 584.797862202494 1167.581171471788 2 584.7974853515625 MULTI HCD FTMS 0 0 0 12865 71983.09375 0.21423165219953372 9 -0.22120285034179688 5 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 38.61474834105838 0.07170385841135779 2 [YT]{I|L}SW 5 4 59.208 0 0 5.071 0 0 0 514.2523287408811 514.2523287408811 40.6246936830415 0 0 0 0 1.3494850021680094 2 0.3494850021680094 0 + [YT]{I|L}SW 5.071 + + 244 + NaN NaN 124639.2 NaN 9800 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12871 58.85 NaN 272550 35 0 22790 0.261 + 11741 KDILVQWLY 9 87 589.3350993620455 1176.655645790891 2 589.3330078125 MULTI HCD FTMS 0 0 0 12865 66410.875 0.13798980452978915 13 -0.31517791748046875 6 Unmodified _KDILVQWLY_ ENST00000519308.1_1_9:5114002-5114779:+|nuORF 13.90604991867851 0.24021115267848145 2 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}D 7 4 23.561 0 0 2.0024 0 0 0 256.1686968648219 256.1686968648219 10.066300825589849 0 0 0 0 0.6549471895720985 0 0.8807196863200843 0 {[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[W{M(Oxidation (M))|F}]{I|L}D 2.0024 - 361 NaN NaN 133409.9 NaN 9801 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12872 58.853 NaN 125370 35 0 8634.9 0.261 + -1 HAGAVLCQMEL 11 48 622.7932963070427 1243.5720396808854 2 622.79443359375 MULTI HCD FTMS 0 0 0 12865 71751.28125 1 0 0 7 Carbamidomethyl (C),Oxidation (M) _HAGAVLC(Carbamidomethyl (C))QM(Oxidation (M))EL_ REV__ENSG00000037280|ENST00000261937|FLT4;REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF;REV__FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;REV__nc|ENSG00000037280|P35916-1|FLT4;REV__nc|ENSG00000037280|P35916-3|FLT4 8.155526934196011 0.3831532958467648 2 C{M(Oxidation (M))|F}EE{I|L} 5 -1 28.928 0 0 2.3262 0 0 604.3328816744065 0 604.3328816744065 0 28.927900303521312 0 0 0 0 0 0 0 C{M(Oxidation (M))|F}EE{I|L} 2.3262 - 14 NaN NaN 110143.8 NaN 9802 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12873 58.856 NaN 459820 35 0 45796 0.261 -1 FPAGYMYPSM 10 65 598.243700017282 1194.4728471013639 2 598.242919921875 MULTI HCD FTMS 0 0 0 12865 60576.0078125 0.2732123959182601 21 -0.5109901428222656 8 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 30.636539890814138 0.2266618088935899 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 34.565 0 0 2.8937 0 0 535.2425404279312 0 535.2425404279312 0 27.57515625508539 0 0 0 1.6237125054200234 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 2.8937 + + 73 NaN NaN 153884.3 NaN 9803 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12874 58.86 NaN 179320 35 0 14708 0.264 + 21649 PYRLIFEKF 9 65 404.8973947492548 1211.6703548479643 3 405.5661926269531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 23.80106514851385 0.15472041655325736 2 QK{M(Oxidation (M))|F} 3 7 31.995 0 0 2.6406 0 0 790.4522572248062 0 790.4522572248062 0 26.15356566548286 0 0 0 0.8807196863200843 0 0 0 QK{M(Oxidation (M))|F} 2.6406 - 30 NaN NaN 111851.4 NaN 9804 3068 12865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12876 58.864 NaN 723840 35 0 263320 0.327 -1 LLGMKKRGF 9 58 533.3165140225194 NaN 0 533.299560546875 PEAK HCD FTMS 0 0 0 12875 20356.544921875 0.5939718407719881 2 -0.048786163330078125 1 Oxidation (M) _LLGM(Oxidation (M))KKRGF_ ENSG00000106268|ENST00000356714|NUDT1;ENST00000471348.1_1_7:2284245-2287675:+|nuORF;nc|ENSG00000106268|P36639-1|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1 9.347437153973935 0.2499504662953367 2 CV 2 -1 7.9588 0 0 0.74757 0 0 62.21437966576861 797.2782686822874 859.492648348056 0 0 0 0 0 0 0 0 0 CV 0.74757 - 21 + NaN NaN 190312.5 NaN 9805 3069 12875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12877 58.869 NaN 716780 35 0 63235 0.261 + 2876 DYSDTHVLAI 10 96 567.2770219968487 1132.5394910604973 2 567.2772827148438 MULTI HCD FTMS 0 0 0 12875 107731.421875 0.5002463572251593 -5 0.14059829711914062 2 Unmodified _DYSDTHVLAI_ REV__ENSG00000198961|ENST00000361189|PJA2;REV__nc|ENSG00000198961|O43164-2|PJA2 37.97399986684836 0.1629881689457739 2 SV[YT]SVSW 8 -1 44.052 0 0 3.8897 0 0 205.09507944388616 0 205.09507944388616 0 -1.172137691284405 -1.172137691284405 0 0 0.3054621874040891 0 0.8882104921644451 0 SV[YT]SVSW 3.8897 - 1678 + NaN NaN 210418.9 NaN 9806 3069 12875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12878 58.872 NaN 413630 35 0 80293 0.263 + 12663 KWFFQKLRF 9 73 433.91680466671517 1298.7285846003456 3 433.9168395996094 MULTI HCD FTMS 0 0 0 12875 252466.921875 0.30418789452182965 23 -0.5716896057128906 3 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 59.368380827593164 0.01846506874148156 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 76.015 0 0 5.853 5.853 88.314 0 0 0 16.478174818886373 12.219712763997563 12.219712763997563 9.208187539523749 0 1.5228787452803376 0 0 0.5994850021680094 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}[AG]K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}[AG]K{M(Oxidation (M))|F}[R{I|L}] 5.853;5.144;4.9121;4.2031;3.9466;3.2376;3.0057;2.2967 +;-;-;-;-;-;-;- + 217 + NaN NaN 153954.5 NaN 9807 3069 12875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12879 58.876 NaN 788520 35 0 149080 0.261 + 11371 IYNPTTGEF 9 96 521.2478572384659 1040.4811615437318 2 521.2482299804688 MULTI HCD FTMS 0 0 0 12875 155633.734375 0.7979276035092745 -5 0.14059829711914062 4 Unmodified _IYNPTTGEF_ ENSG00000069849|ENST00000286371|ATP1B3 96.11092074494114 0.00436583732602279 2 [Y{I|L}]NPTT{[DA]|[EG]}{M(Oxidation (M))|F} 9 0 + 65.062 0 0 6.253 6.253 89.898 0 0 0 0.8007119873918072 0.8007119873918072 0.8007119873918072 9.915419442670398 0 2.4322333069283655 1.2218487496163564 0.9489700043360187 0.28872548999643577 + + [Y{I|L}]NPTT{[DA]|[EG]}{M(Oxidation (M))|F};{[MG]|[TS]}YTTP[QP]{M(Oxidation (M))|F};[Y{I|L}]GGPTT{[DA]|[EG]}{M(Oxidation (M))|F};[Y{I|L}]NV{[CP]|[EA]}{[DA]|[EG]}{M(Oxidation (M))|F};{[MG]|[TS]}[Q{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{M(Oxidation (M))|F};[Y{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[MN] 6.253;5.3001;5.2911;4.5136;2.0437;0.44453 +;-;-;-;-;- + 503 NaN NaN 213611.1 NaN 9808 3069 12875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12880 58.879 NaN 213390 35 0 25710 0.261 + 29181 TYISWKEEL 9 68 584.797862202494 1167.581171471788 2 584.8002319335938 MULTI HCD FTMS 0 0 0 12875 95677.5078125 0.28474950865814475 10 -0.2368316650390625 5 Unmodified _TYISWKEEL_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 45.739877483867886 0.03899552410870734 2 [YT]{I|L}SW 5 4 60.515 0 0 5.183 0 0 0 514.2504366510374 514.2504366510374 42.591189550378914 0 0 0 0 1.3494850021680094 2 0.6307196863200843 0 + [YT]{I|L}SW 5.183 + + 358 + NaN NaN 125656.5 NaN 9809 3069 12875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12881 58.882 NaN 494130 35 0 52828 0.261 + 5739 FPAGYMYPSM 10 80 598.243700017282 1194.4728471013639 2 598.2431640625 MULTI HCD FTMS 0 0 0 12875 46380.29296875 0.20918630036838098 22 -0.5388221740722656 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 50.93 0 0 4.2638 0 0 535.2446156232437 0 535.2446156232437 0 41.97743773147742 0 0 0 1.774227503252014 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.2638 + + 97 NaN NaN 162100.5 NaN 9810 3069 12875 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12883 58.887 NaN 537680 35 0 52716 0.327 + 29305 TYNDQSITF 9 74 544.7483426255733 1087.4821323179465 2 544.7483520507812 MULTI HCD FTMS 0 0 0 12882 235349.6875 0.8025653736997937 -3 0.07489013671875 1 Unmodified _TYNDQSITF_ ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-3|IL33 110.5527297667825 0.0028521687250969148 2 [YT]NDQS{I|L}T{M(Oxidation (M))|F} 9 0 + 99.14 0 0 9.1165 9.1165 93.502 0 0 0 21.751736484954378 85.95229386281659 21.751736484954378 9.208187539523749 0 2.25 1.6989700043360187 1.1307196863200843 1.2302046884880937 + + [YT]NDQS{I|L}T{M(Oxidation (M))|F};[YT]GGDQS{I|L}T{M(Oxidation (M))|F};[YT]ND[AG]S{I|L}T{M(Oxidation (M))|F};[YT]GGD[AG]S{I|L}T{M(Oxidation (M))|F};[YT]NDQSYVV;[YT]ND[AG]SYVV;[YT]GGDQSYVV;[YT]GGD[AG]SYVV;{[TV]|[{I|L}S]}T{[C(Carbamidomethyl (C))E]|[WC]}[KC]T{M(Oxidation (M))|F} 9.1165;8.2697;8.2697;6.2957;4.4417;3.5949;3.5949;2.4021;1.9102 +;-;-;-;-;-;-;-;- + 507 NaN NaN 167652.6 NaN 9811 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12884 58.892 NaN 905770 35 0 154560 0.262 + 2818 DYKRLFFRF 9 59 431.23621914948706 1290.6868280486613 3 431.236083984375 MULTI HCD FTMS 0 0 0 12882 160528.546875 0.3673221705652073 4 -0.0941925048828125 2 Unmodified _DYKRLFFRF_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 26.020703789607367 0.13554323117744113 2 DYKR{I|L}{M(Oxidation (M))|F} 6 3 63.889 0 0 4.95 0 0 0 465.22605310611567 465.22605310611567 38.672137691284405 0 0 0 0 0.2742275032520141 1.6989700043360187 0 0 + DYKR{I|L}{M(Oxidation (M))|F} 4.95 + + 35 + NaN NaN 228873.6 NaN 9812 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12885 58.895 NaN 387680 35 0 32375 0.261 + 19864 NYAWVYYHM 9 76 631.7687083198309 1261.5228637064617 2 631.7686157226562 MULTI HCD FTMS 0 0 0 12882 132218.9375 0.4073058493888881 8 -0.19135665893554688 3 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 114.94377779790601 0.0021353177819039447 2 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 94.689 0 0 7.506 7.506 92.576 0 0 0 19.120768972555595 14.973024840566467 14.973024840566467 11.817496819840656 0 2.6549471895720984 1.6989700043360187 0 1.829689690656103 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]A[YV]WYH{M(Oxidation (M))|F};[YN]WTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AW[MN]Y[PG]{M(Oxidation (M))|F};[YN]ADAYV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]ADAY{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]WA[MN]Y[PG]{M(Oxidation (M))|F};[YN]AWY[WE][KC];[YN]{[MG]|[TS]}WKY[WD] 7.506;6.5692;5.7001;5.1198;4.7716;4.5506;4.0597;3.8348;2.6446;2.3079 -;-;-;-;-;-;-;-;-;- 487 NaN NaN 147002.7 NaN 9813 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12886 58.899 NaN 380160 35 0 38600 0.262 -1 IPDEQIVVM 9 80 530.2729557672837 1058.5313586013674 2 530.2736206054688 MULTI HCD FTMS 0 0 0 12882 95565.046875 0.615517573484258 -4 0.11096954345703125 4 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 22.736283301280096 0.1639198954644489 2 {I|L}VV{M(Oxidation (M))|F} 4 -1 47.44 0 0 4.4817 0 0 582.26567275215 0 582.26567275215 0 29.45911390231766 0 0 0 1.7887254899964358 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.4817 + + 289 NaN NaN 150164.3 NaN 9814 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12887 58.902 NaN 278610 35 0 28022 0.261 + -1 YISKGKCTF 9 76 552.2796994662702 1102.5448459993404 2 552.2788696289062 MULTI HCD FTMS 0 0 0 12882 35840.52734375 0.4788037742481437 3 -0.07474517822265625 5 Carbamidomethyl (C) _YISKGKC(Carbamidomethyl (C))TF_ REV__ENSG00000172955|ENST00000394899|ADH6;REV__nc|ENSG00000172955|P28332|ADH6 14.838274106304384 0.23215694253501695 2 T{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.2472 0 0 836.4187606495342 0 836.4187606495342 0 15.814199567108565 0 0 0 0.3807196863200844 0 0 0 T{M(Oxidation (M))|F} 2.2472 + + 196 + NaN NaN 139297.2 NaN 9815 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12888 58.905 NaN 262590 35 0 32584 0.261 + 35040 YTILIKYGG 9 63 514.2942756560486 1026.5739983788972 2 514.2943115234375 MULTI HCD FTMS 0 0 0 12882 40154.47265625 0.35888674687791366 3 -0.07474517822265625 6 Unmodified _YTILIKYGG_ ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA 19.256988751693697 0.19398022840297344 2 [YT]{I|L}{I|L} 4 5 43.065 0 0 4.195 0 0 0 533.2731417291624 533.2731417291624 25.629529932484502 0 0 0 0 1.2887254899964358 1.6989700043360187 0 0 + [YT]{I|L}{I|L} 4.195 + + 59 + NaN NaN 131397.2 NaN 9816 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12889 58.908 NaN 177670 35 0 15590 0.261 + 31136 VTTMGCRHGF 10 56 554.7566528320312 NaN 0 554.7566528320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VTTMGCRHGF_ REV__ENSG00000241360|ENST00000215904|PDXP 7.289230182591677 0.3339457182549222 2 {I|L} 1 -1 9.2917 0 0 0.83972 0 0 131.10298774003223 859.3249987796124 990.4279865196447 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 0.83972 - 17 + NaN NaN 117573.8 NaN 9817 3070 12882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12891 58.913 NaN 4447300 35 0 489790 0.327 + 13313 KYMDVQFDF 9 125 604.7681116504034 1207.5216703676067 2 604.7684936523438 MULTI HCD FTMS 0 0 0 12890 2983124.5 0.7881079916508423 -3 0.08153533935546875 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 160.6895995991744 8.89223804155775E-09 2 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 90.036 0 0 7.4563 7.4563 86.724 0 0 0 0.49558710908905823 10.046955827817868 0.49558710908905823 0.49558710908905823 0 1.5 1.3010299956639813 1.3129529932484498 1.035666875892183 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QKD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.4563;7.4152;7.2959;7.1258;7.0212;7.0113;6.8596;6.6937;6.6527;6.3632 -;+;-;-;-;-;-;-;-;- + 11783 NaN NaN 766431.1 NaN 9818 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12892 58.918 NaN 1558900 35 0 111760 0.261 + 27085 SYMGHFDLL 9 117 549.7498633743731 1097.4851738155462 2 549.75 MULTI HCD FTMS 0 0 0 12890 604283.5 0.06576568232751791 -9 0.24847793579101562 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 2 {I|L}D[C(Carbamidomethyl (C))R]QE{M(Oxidation (M))|F} 7 9 48.943 0 0 4.4596 0 0 131.0956546631342 0 131.0956546631342 0 4.8188163164422875 0 0 0 0.5891368308784531 0 1.4604093769761874 0.2742275032520141 {I|L}D[C(Carbamidomethyl (C))R]QE{M(Oxidation (M))|F} 4.4596 - 1854 + NaN NaN 337913.5 NaN 9819 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12893 58.921 NaN 541340 35 0 65290 0.261 + 18856 NAELWQVSW 9 88 566.7753210247591 1131.5360891163182 2 566.7748413085938 MULTI HCD FTMS 0 0 0 12890 186731.3125 0.6605018083267592 16 -0.38375091552734375 3 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 2 SVSW 4 6 54.117 0 0 4.7826 0 0 654.3130232180686 0 654.3130232180686 0 30.929614462122487 0 0 0 1.8807196863200843 0 0.6382104921644451 0 SVSW 4.7826 - 1221 NaN NaN 176298.2 NaN 9820 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12894 58.924 NaN 365410 35 0 38869 0.261 + 7001 FPWGDGNHTL 10 78 572.2645186509936 1142.5144843687872 2 572.2642211914062 MULTI HCD FTMS 0 0 0 12890 122565.3515625 0.7428586513224404 1 -0.025970458984375 4 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 55.50274090549119 0.0577772802216 2 {I|L}M{[DA]|[EG]}[WY]MT{I|L} 9 7 + 60.128 0 0 5.2628 5.2628 88.456 0 0 0 19.366130211356065 10.796896906561031 10.796896906561031 10.796896906561031 0 1.6989700043360187 1.5228787452803376 1.3807196863200843 0 {I|L}M{[DA]|[EG]}[WY]MT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};{I|L}M{[DA]|[EG]}[WY]{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[YT]{[DA]|[EG]}M{I|L};[WP]{M(Oxidation (M))|F}[YT]{[ES]|[DT]|[{I|L}C]}T{I|L};{M(Oxidation (M))|F}PW[QT]{[CP]|[EA]}[HQ];{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}DVWM{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TA][YV]WM{I|L} 5.2628;4.3178;3.9476;3.6826;2.3931;2.0926;1.0706;0.42986 -;-;-;-;-;-;-;- 410 + NaN NaN 167411.2 NaN 9821 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12895 58.928 NaN 566480 35 0 49648 0.261 + 26840 SYIHYVFRL 9 81 599.3247283581795 1196.634903783159 2 599.3245239257812 MULTI HCD FTMS 0 0 0 12890 208476.671875 0.7119032834344128 -2 0.048786163330078125 5 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 70.33199760932243 0.0089807860198535 2 SY{I|L}HYV{M(Oxidation (M))|F}R{I|L} 9 0 + 97.686 0 0 8.1634 8.1634 93.35 0 0 0 78.22228114217921 9.009461452434238 9.009461452434238 10.642714304385635 0 2.9604093769761874 2 0 0 + + SY{I|L}HYV{M(Oxidation (M))|F}R{I|L};SY{I|L}HYV{I|L}[R{M(Oxidation (M))|F}];{I|L}HA{I|L}VYH{I|L}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HYV{M(Oxidation (M))|F}R{I|L};[H{I|L}]A{I|L}VYH{I|L}[MT];[H{I|L}]YSYV{M(Oxidation (M))|F}R{I|L};[H{I|L}]A{I|L}VYH[MT]{I|L};{[WN]|[YH]}{I|L}SYV{M(Oxidation (M))|F}R{I|L};SV[WQ]YV{M(Oxidation (M))|F}R{I|L};[H{I|L}]A{I|L}VY[WQ][PA] 8.1634;7.274;6.2473;6.0257;5.7983;5.4677;5.4433;5.4044;4.5036;3.8098 +;-;-;+;-;-;-;-;-;- + 360 + NaN NaN 174996.6 NaN 9822 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12896 58.931 NaN 271020 35 0 23927 0.261 -1 FVVEHDFIM 9 72 576.7734074464107 1151.5322619596213 2 576.771728515625 MULTI HCD FTMS 0 0 0 12890 51208.98828125 0.1715162070799352 -12 0.34044647216796875 6 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 36.04419817259434 0.08350412372117409 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.701 0 0 2.2319 0 0 873.4017811505875 0 873.4017811505875 0 3.789850105233299 0 0 0 0.7742275032520141 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2319 + + 43 NaN NaN 139376.9 NaN 9823 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12897 58.934 NaN 212960 35 0 28562 0.261 -1 MYSDVWKQL 9 64 593.2832828318346 NaN 0 593.283203125 PEAK HCD FTMS 0 0 0 12890 80797 0.9362360165690524 -1 0.02606964111328125 7 Oxidation (M) _M(Oxidation (M))YSDVWKQL_ ENSG00000176783|ENST00000319449|RUFY1;ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1 36.506200033944 0.08948014603198573 2 QKW 3 -1 25.203 0 0 2.1276 0 0 131.09229161092804 608.1998385065061 739.2921301174342 0 0 0 0 0 1.25 0 0 0 QKW 2.1276 - 37 + NaN NaN 123689 NaN 9824 3071 12890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12899 58.939 NaN 1613200 35 0 185830 0.327 + 4683 EYPDRIMNTF 10 94 643.297686036255 1284.5808191393098 2 643.2978515625 MULTI HCD FTMS 0 0 0 12898 844405.0625 0.3146932183440375 7 -0.16207504272460938 1 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 121.50329630698991 3.65857907354071E-05 2 [YE]PDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 84.944 0 0 6.6126 6.6126 91.896 0 0 0 47.30327215271493 22.001962355242952 22.001962355242952 15.714011381220232 0 2.322682509756042 1.6989700043360187 1.5044321917401078 0.6549471895720984 + + [YE]PDR{I|L}MNT{M(Oxidation (M))|F};[YE]PDR{I|L}MGGT{M(Oxidation (M))|F};[YE]P{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]NT{M(Oxidation (M))|F};[YE]P[C(Carbamidomethyl (C))N][K{I|L}]NT{M(Oxidation (M))|F};[YE]P{M(Oxidation (M))|F}[RV]MN{[ET]|[MV]};[YE]PD[PA][H{I|L}]N{[ET]|[MV]};[YE]P{M(Oxidation (M))|F}[RV]MGG{[ET]|[MV]};{[QS]|[NT]}{M(Oxidation (M))|F}M[RV][EP][YE];[{M(Oxidation (M))|F}V][HQ][KS]T{M(Oxidation (M))|F}[YE];{[QS]|[NT]}M{M(Oxidation (M))|F}[RV][EP][YE] 6.6126;5.3893;4.3189;3.7132;2.4958;1.6974;1.5446;0.69958;0.42755;0.15201 +;-;-;-;-;-;-;-;-;- + 1230 + NaN NaN 351466.1 NaN 9825 3072 12898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12900 58.944 NaN 1018300 35 0 73299 0.261 + 600 APFKFDMEL 9 98 557.2676362448831 1112.520719556566 2 557.2681274414062 MULTI HCD FTMS 0 0 0 12898 470275.15625 0.9635408179657712 -3 0.07475662231445312 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 133.0521902211835 0.0004198702180815479 2 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 94.179 0 0 8.4654 8.4654 94.562 0 0 0 13.444700536857667 13.444700536857667 13.444700536857667 13.444700536857667 0 3.110924374808178 0 2.447621246364342 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AC(Carbamidomethyl (C))[{I|L}V]{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};A[CG][{I|L}V]{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}W[YK]D{M(Oxidation (M))|F}E{I|L};W{I|L}[YK]D{M(Oxidation (M))|F}E{I|L} 8.4654;7.2569;6.9863;6.2663;6.1551;5.8822;5.2453;4.4176;3.8433;3.5773 +;+;-;-;-;-;-;-;-;- + 2762 + NaN NaN 253618.3 NaN 9826 3072 12898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12901 58.947 NaN 339170 35 0 27743 0.261 + 35928 YYTLGDSACTF 11 58 620.7629458502538 1239.5113387673075 2 620.7632446289062 MULTI HCD FTMS 0 0 0 12898 155974.703125 0.7470775131815007 -1 0.025970458984375 3 Unmodified _YYTLGDSACTF_ REV__ENSG00000127578|ENST00000319070|WFIKKN1;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 8.745405648335112 0.3805662881914433 2 KEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 -1 55.266 0 0 4.4587 0 0 427.1422291486344 0 427.1422291486344 0 44.80835659879972 0 0 0 1 0 0.3494850021680094 0 KEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.4587 - 137 NaN NaN 145672 NaN 9827 3072 12898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12902 58.95 NaN 516970 35 0 52630 0.261 + 16821 LYECTGQFDF 10 68 611.7578124386359 1221.5010719440718 2 611.7582397460938 MULTI HCD FTMS 0 0 0 12898 297772.875 1 0 0 4 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 49.55428908609986 0.07941048486997417 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 78.906 0 0 6.4598 6.4598 90.857 0 0 0 4.884381005764311 64.67584314246004 4.884381005764311 12.417114474659215 0 2.3494850021680094 0 1.055462187404089 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][CS]DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[CS][{I|L}T]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][CS]DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DC][{I|L}T]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.4598;5.4432;5.1826;5.0051;4.4338;4.4288;4.3092;4.2667;3.9885;3.951 -;-;-;-;-;-;-;-;-;- 590 NaN NaN 186139.2 NaN 9828 3072 12898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12903 58.954 NaN 518760 35 0 49364 0.261 + 8397 GYNVKFDMF 9 97 568.7575579795238 1135.5005630258474 2 568.7586059570312 MULTI HCD FTMS 0 0 0 12898 72273.1328125 0.3393621886198477 18 -0.4296302795410156 5 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ ENSG00000167468|ENST00000354171|GPX4;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;ENST00000589115.5_1_19:1105440-1106426:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4 41.95555342248728 0.056367691549927025 2 Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 5 46.936 0 0 4.1335 0 0 113.0138819729162 0 113.0138819729162 0 9.756856815600656 0 0 0 1.0356668758921828 0 0.3494850021680094 0 Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1335 - 1398 + NaN NaN 170798.4 NaN 9829 3072 12898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12904 58.957 NaN 82328 35 0 6997.6 0.263 + 25244 SASSEVAFL 9 44 455.7296142578125 NaN 0 455.7296142578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SASSEVAFL_ ENSG00000126838|ENST00000261336|PZP 16.942295170755138 0.2079222001251384 2 S 1 8 3.0989 0 0 0.34075 0 0 158.07179658027502 661.3160494440061 819.3878460242811 0 0 0 0 0 0 0 0 0 + S 0.34075 + + 1 + NaN NaN 101820.7 NaN 9830 3072 12898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12906 58.962 NaN 553070 35 0 89871 0.327 -1 0 80 582.3447276431323 1162.6749023530645 2 582.3447875976562 MULTI HCD FTMS 0 0 0 12905 365222.53125 0.07738292581793442 18 -0.4413604736328125 1 NaN NaN 2 WV{I|L}DK{I|L} 6 -1 47.484 0 0 4.0841 0 0 390.227342674025 0 390.227342674025 0 27.474702404264022 0 0 0 1.3494850021680094 0 0 0 WV{I|L}DK{I|L} 4.0841 - 511 NaN NaN 181329.9 NaN 9831 3073 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12907 58.966 NaN 283220 35 0 25366 0.261 + 35860 YYQNYFEKL 9 58 634.3035096882438 1266.5924664432875 2 634.303466796875 MULTI HCD FTMS 0 0 0 12905 235208.546875 0.11252832466925823 22 -0.5527153015136719 2 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 75.5705956163825 0.007285660612518157 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 92.049 0 0 7.2675 7.2675 90.784 0 0 0 2.0918314578791097 2.0918314578791097 2.0918314578791097 9.208187539523749 0 2.6989700043360187 2 0 0.4247425010840047 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]{M(Oxidation (M))|F}EK{I|L};YY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YQ]EK{I|L} 7.2675;6.5405;6.5405;5.8169;4.9624;4.0519 +;-;-;-;-;- + 148 + NaN NaN 133912.1 NaN 9832 3073 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12908 58.97 NaN 467630 35 0 189710 0.263 + 14154 LAFGKPLVE 9 54 487.2893296108616 972.5641062885232 2 487.2894287109375 MULTI HCD FTMS 0 0 0 12905 92069.0234375 0.1792191640936913 6 -0.13936996459960938 3 Unmodified _LAFGKPLVE_ ENSG00000111271|ENST00000313698|ACAD10;ENST00000512792.2_1_12:112191278-112193633:+|nuORF;ENST00000547491.1_1_12:112186933-112194274:+|nuORF;nc|ENSG00000111271|Q6JQN1-5|ACAD10 21.74664581756881 0.17247014374749275 2 [{I|L}A][K{I|L}]{[MG]|[TS]}{I|L} 7 6 23.473 0 0 2.4135 0 0 0 243.0987948053344 243.0987948053344 4.598557027813534 0 0 0 0 0.4247425010840047 1.3979400086720375 0.3494850021680094 0 [{I|L}A][K{I|L}]{[MG]|[TS]}{I|L} 2.4135 - 59 + NaN NaN 157431 NaN 9833 3073 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12909 58.973 NaN 534690 35 0 55657 0.261 + 7741 FYMDTSHLF 9 94 588.7550286745544 1175.4955044159087 2 588.7544555664062 MULTI HCD FTMS 0 0 0 12905 154785.71875 0.5378429396280315 -1 0.022705078125 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 100.37149154755038 0.004254194004462789 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 75.096 0 0 6.3885 6.3885 91.354 0 0 0 57.46659009610504 6.707414567553286 6.707414567553286 15.09447140222349 0 2.4604093769761874 0 1.064909327626439 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];[QP]G{[CA]|SS}[YV]{M(Oxidation (M))|F}YE;[DP][MN]DK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[QP][EC]DK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[QP]G{[CA]|SS}[YV]EY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DT[RN][{I|L}T];[DN]VEDTS[PS]{[NV]|[RG]};[QP]G{[CA]|SS}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 6.3885;5.1044;4.7668;3.2982;3.1984;2.9424;2.3434;2.0927;2.0596;1.9854 +;+;-;-;-;-;-;-;-;- + 785 + NaN NaN 171519.1 NaN 9834 3073 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12910 58.977 NaN 383880 35 0 129320 0.263 + 523 APAPESITL 9 52 449.74751195159905 897.4804709699981 2 449.7475280761719 MULTI HCD FTMS 0 0 0 12905 107666.46875 1 0 0 5 Unmodified _APAPESITL_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8 14.838274106304384 0.23215694253501695 2 T{I|L} 2 7 30.217 0 0 3.3668 0 0 665.3378132121629 0 665.3378132121629 0 17.452315297631706 0 0 0 0.9247425010840047 0 0 0 + T{I|L} 3.3668 + + 14 NaN NaN 155689.9 NaN 9835 3073 12905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12912 58.981 NaN 287000 35 0 25696 0.327 + 1494 AYTPFHAVL 9 62 509.7714760713858 1017.5283992095716 2 509.7708740234375 MULTI HCD FTMS 0 0 0 12911 104543.1953125 0.05694005977597625 19 -0.4809913635253906 1 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 46.92087301778293 0.0358782797343276 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4 5 43.21 0 0 4.2465 0 0 0 582.3048800104124 582.3048800104124 29.23012235029251 0 0 0 0 0.9247425010840047 2 0.5 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP 4.2465 + + 42 + NaN NaN 132276.7 NaN 9836 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12913 58.986 NaN 259640 35 0 23206 0.261 + 5 AADDTEISF 9 53 484.71354587023836 967.4125388072767 2 485.21417236328125 MULTI HCD FTMS 0 0 0 12911 54853.98828125 0.44893453256191534 1 -0.0294036865234375 2 Unmodified _AADDTEISF_ ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL 46.020951573049366 0.037705236580089195 2 E{I|L}S{M(Oxidation (M))|F} 4 5 50.745 0 0 5.2455 0 0 473.1747017616692 0 473.1747017616692 0 40.56810945375766 0 0 0 1.5 0 0.3807196863200844 0 + E{I|L}S{M(Oxidation (M))|F} 5.2455 + + 94 + NaN NaN 137655.9 NaN 9837 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12914 58.989 NaN 223390 35 0 41008 0.261 + 23086 REMAGVAF 8 59 440.72126228054947 NaN 0 440.7209777832031 PEAK HCD FTMS 0 0 0 12911 75146.9296875 0.040806691206436804 28 -0.6922569274902344 3 Unmodified _REMAGVAF_ REV__ENSG00000159131|ENST00000381815|GART;REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF 14.581692164780916 0.38795613832665576 2 V 1 -1 9.732 0 0 1.1066 0 0 186.07958882260544 591.2568305998476 777.336419422453 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.1066 + + 7 + NaN NaN 137628.4 NaN 9838 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12915 58.993 NaN 254360 35 0 24808 0.261 + 18718 MYSDVWKQL 9 53 593.2832828318346 NaN 0 593.2841186523438 PEAK HCD FTMS 0 0 0 12911 38946.515625 0.4512931253387423 2 -0.055438995361328125 4 Oxidation (M) _M(Oxidation (M))YSDVWKQL_ ENSG00000176783|ENST00000319449|RUFY1;ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1 45.69961567697781 0.05999643521280087 2 QKW 3 8 17.677 0 0 1.4923 0 0 131.09750173987646 608.2032564752561 739.3007582151326 0 0 0 0 0 0.75 0 0 0 QKW 1.4923 - 25 + NaN NaN 130220.8 NaN 9839 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12916 58.996 NaN 177830 35 0 31253 0.264 -1 TGCRACDCDF 10 56 421.15149174992376 1260.4326458499713 3 421.1516418457031 MULTI HCD FTMS 0 0 0 12911 58048.32421875 0.8446431409300209 1 -0.0294036865234375 5 3 Carbamidomethyl (C) _TGC(Carbamidomethyl (C))RAC(Carbamidomethyl (C))DC(Carbamidomethyl (C))DF_ ENSG00000196878|ENST00000356082|LAMB3 1.4551175022131473 0.4676015363898197 2 {M(Oxidation (M))|F} 1 -1 20.797 0 0 1.65 0 0 1095.3539542989931 0 1095.3539542989931 0 17.697953115119063 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.65 + + 8 + NaN NaN 127464.4 NaN 9840 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12917 58.999 NaN 346820 35 0 27209 0.261 + 34343 YPEEVSSMVL 10 64 585.2731630792459 1168.5317732252918 2 585.2730102539062 MULTI HCD FTMS 0 0 0 12911 61143.296875 0.3497014084406349 -8 0.20516204833984375 6 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 43.85829265575387 0.11192494793849486 2 [YT]{I|L}SS 5 7 51.95 0 0 4.4458 0 0 0 614.2455630484282 614.2455630484282 25.924778212679485 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3494850021680094 0 [YT]{I|L}SS 4.4458 - 272 NaN NaN 142125.4 NaN 9841 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12918 59.003 NaN 143240 35 0 15073 0.263 + 9205 HPLPFPSL 8 60 454.25587192560096 906.4971909180019 2 454.255859375 MULTI HCD FTMS 0 0 0 12911 54587.1875 0.6202748623810534 -1 0.01944732666015625 7 Unmodified _HPLPFPSL_ ENST00000396359.1_1_8:82193222-82195661:+|nuORF 45.7499826716795 0.15706429320890578 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[{I|L}P]PS{I|L} 8 2 + 42.937 0 0 4.7366 4.7366 83.424 0 0 0 6.9897000433601875 25.94720941673181 6.9897000433601875 3.4948500216800937 0 0.8494850021680094 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[{I|L}P]PS{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PS{I|L} 4.7366;4.351 -;+ + 55 NaN NaN 110901.3 NaN 9842 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12919 59.006 NaN 115140 35 0 23580 0.261 + 23415 RLKLKRITLI 10 39 627.445068359375 NaN 0 627.445068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RLKLKRITLI_ REV__ENST00000479096.1_1_20:30135258-30136578:+|nuORF 0 0.34018428902965525 2 W 1 -1 3.9794 0 0 0.31762 0 0 517.5969738263688 546.1679781549436 1063.7649519813124 0 0 0 0 0 0 0 0 0 W 0.31762 - 3 + NaN NaN 99572.7 NaN 9843 3074 12911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12921 59.011 NaN 915850 35 0 385100 0.327 -1 0 76 427.30271260447546 852.5908722757509 2 427.3027038574219 MULTI HCD FTMS 0 0 0 12920 478164 1 0 0 1 NaN NaN 2 {I|L} 1 -1 14.604 0 0 1.7129 0 0 721.4965252071947 0 721.4965252071947 0 4.938331324631376 0 0 0 0 0 0 0 {I|L} 1.7129 - 34 + NaN NaN 237542.1 NaN 9844 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12922 59.015 NaN 987450 35 0 206740 0.261 + 33157 YELRTYKL 8 85 543.3022819382214 NaN 0 543.2849731445312 PEAK HCD FTMS 0 0 0 12920 37482.44921875 1 0 0 2 Unmodified _YELRTYKL_ ENSG00000184117|ENST00000216121|NIPSNAP1 8.593279151180031 0.38822285293237185 2 YQ{M(Oxidation (M))|F} 3 7 18.06 0 0 1.6651 0 0 131.13021400261306 512.2629488580686 643.3931628606817 0 0 0 0 0 0 0 0 0.4247425010840047 YQ{M(Oxidation (M))|F} 1.6651 - 392 + NaN NaN 236715.6 NaN 9845 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12923 59.019 NaN 666510 35 0 276780 0.261 + 15038 LLPSRQFGF 9 76 532.7979125642493 1063.5812721952984 2 532.798095703125 MULTI HCD FTMS 0 0 0 12920 241519.59375 0.669201048468461 4 -0.09051895141601562 3 Unmodified _LLPSRQFGF_ ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF 25.399314129420986 0.14091189997036632 2 T{I|L}{I|L}[HV]{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 8 5 23.542 0 0 2.2135 0 0 131.08793831033591 0 131.08793831033591 0 7.583143532701726 0 0 0 0.8494850021680094 0 0 0 T{I|L}{I|L}[HV]{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 2.2135 - 185 + NaN NaN 190841.8 NaN 9846 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12924 59.022 NaN 585560 35 0 67317 0.261 + 2877 DYSDTHVLAI 10 87 567.2770219968487 1132.5394910604973 2 567.2774658203125 MULTI HCD FTMS 0 0 0 12920 195059.15625 0.9057490438647909 1 -0.026035308837890625 4 Unmodified _DYSDTHVLAI_ REV__ENSG00000198961|ENST00000361189|PJA2;REV__nc|ENSG00000198961|O43164-2|PJA2 30.636539890814138 0.2266618088935899 2 SVSYTVSW 8 -1 53.825 0 0 4.7526 0 0 205.09487082722916 0 205.09487082722916 0 12.570428924955408 0 0 0 0.2742275032520141 0 0.6237125054200234 0 SVSYTVSW 4.7526 - 817 + NaN NaN 178236.4 NaN 9847 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12925 59.025 NaN 260040 35 0 49578 0.263 + 12664 KWFFQKLRF 9 68 433.91680466671517 1298.7285846003456 3 433.91668701171875 MULTI HCD FTMS 0 0 0 12920 115646.859375 0.13933854938335521 29 -0.70843505859375 5 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 47.594388314883695 0.03493607795751234 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 61.683 0 0 4.7495 4.7495 89.056 0 0 0 56.19817987694573 14.09256854528806 14.09256854528806 16.682437647924218 0 1.1069758080123702 0 0 0.7302046884880937 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}[WK]{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}] 4.7495;3.4649;2.7228;1.4383 +;-;-;- + 112 + NaN NaN 126791.3 NaN 9848 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12926 59.029 NaN 561810 35 0 70161 0.261 + 7470 FVVEHDFIM 9 73 576.7734074464107 1151.5322619596213 2 576.7734985351562 MULTI HCD FTMS 0 0 0 12920 133630.875 0.4475749589679936 -8 0.198486328125 6 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 48.345845343767074 0.03388484103555672 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 34.693 0 0 3.0127 0 0 726.3359242169937 0 726.3359242169937 0 14.247425010840047 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.0127 + + 103 NaN NaN 170950.7 NaN 9849 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12927 59.032 NaN 147880 35 0 9595.6 0.261 + -1 GELMQEPEM 9 53 540.2209115995793 NaN 0 539.7675170898438 PEAK HCD FTMS 0 0 0 12920 22361.322265625 0.5059983067680838 -1 0.0294036865234375 7 Oxidation (M) _GELMQEPEM(Oxidation (M))_ REV__ENSG00000162961|ENST00000342166|DPY30;REV__ENST00000414013.5_1_2:32248542-32264525:-|nuORF;REV__ENST00000452582.5_1_2:32248542-32264525:-|nuORF 4.3292370932331545 0.2742679634796037 2 E 1 -1 5.4846 0 0 0.50857 0 0 114.946331221643 831.4041842096311 946.3505154312742 0 0 0 0 0 0 0 0 0 E 0.50857 + + 6 + NaN NaN 111660 NaN 9850 3075 12920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12929 59.037 NaN 788680 35 0 96338 0.327 + 17034 LYIVHPTMF 9 99 568.7939593012626 1135.573365669325 2 568.7938232421875 MULTI HCD FTMS 0 0 0 12928 231993.78125 0.7065950864626591 1 -0.01610565185546875 1 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 85.35673624503755 0.00464763827098139 2 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 91.029 0 0 8.0161 8.0161 95.741 0 0 0 60.39381281052492 14.973024840566467 14.973024840566467 29.75895023531386 0 2.6677353201839438 2 0.6549471895720985 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y{I|L}VHPY[MT];[YG]NKK[RN]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 8.0161;5.3955;1.2666 +;-;- + 1378 + NaN NaN 211542.7 NaN 9851 3076 12928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12930 59.041 NaN 416330 35 0 44788 0.261 -1 IPDEQIVVM 9 77 530.2729557672837 1058.5313586013674 2 530.2727661132812 MULTI HCD FTMS 0 0 0 12928 122016.078125 0.7858839899048147 2 -0.04172515869140625 2 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 22.736283301280096 0.1639198954644489 2 {I|L}VV{M(Oxidation (M))|F} 4 -1 48.488 0 0 4.5807 0 0 582.2639027326187 0 582.2639027326187 0 21.437171589032502 0 0 0 1.805462187404089 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.5807 + + 397 NaN NaN 140742.5 NaN 9852 3076 12928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12931 59.045 NaN 235170 35 0 98825 0.261 + 12049 KIMKQQEKIK 10 42 637.3857145947899 NaN 0 637.3857421875 PEAK HCD FTMS 0 0 0 12928 117491.234375 0.34181452687385383 6 -0.12289810180664062 3 Unmodified _KIMKQQEKIK_ ENSG00000123636|ENST00000392783|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B 1.4819007175156935 0.33891598740166873 2 Q 1 9 1.9897 0 0 0.15633 0 0 644.3783495003235 497.28217493228755 1141.660524432611 0 0 0 0 0 0 0 0 0 + Q 0.15633 + + 1 + NaN NaN 120551.6 NaN 9853 3076 12928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12932 59.048 NaN 301120 35 0 44056 0.264 + 24903 RYQWLWEF 8 64 409.8696992157377 1226.587268247413 3 409.8692932128906 MULTI HCD FTMS 0 0 0 12928 47949.66015625 0.20658555707104465 -10 0.2606010437011719 4 Unmodified _RYQWLWEF_ REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant 1.6526216038709556 0.5395404884934816 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3851 0 0 1061.5082867794426 0 1061.5082867794426 0 10.536049848239344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3851 + + 6 + NaN NaN 142566.2 NaN 9854 3076 12928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12934 59.053 NaN 9177300 35 0 978820 0.327 + 27086 SYMGHFDLL 9 114 549.7498633743731 1097.4851738155462 2 549.75 MULTI HCD FTMS 0 0 0 12933 6228266.5 0.6778377964814889 -3 0.07154464721679688 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 196.64828556020333 2.142729284121474E-17 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 92.359 0 0 8.4155 8.4155 91.023 0 0 0 25.40987595645234 7.257724967479859 7.257724967479859 7.257724967479859 0 2.579689690656103 2 1.9040820565447218 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}YS{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT] 8.4155;7.7542;6.1003;3.5453;3.2424;3.1644;3.0636;2.9747;2.9328;2.5975 +;-;+;-;-;-;-;-;-;- + 4142 + NaN NaN 679336.4 NaN 9855 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12935 59.057 NaN 3913600 35 0 434100 0.228 + 13314 KYMDVQFDF 9 105 604.7681116504034 1207.5216703676067 2 604.7684326171875 MULTI HCD FTMS 0 0 0 12933 2359768.75 0.6234244029449386 3 -0.06450271606445312 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 160.6895995991744 8.89223804155775E-09 2 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 88.546 0 0 7.3329 7.3329 86.661 0 0 0 1.2706042160551902 9.48780091214961 1.2706042160551902 0.9510795087364556 0 1.5 1.3010299956639813 1.2638793319624577 1.0228787452803376 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QKD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]Q{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.3329;7.2541;7.2277;6.9069;6.8959;6.7523;6.5703;6.4651;6.285;6.1443 -;-;+;-;-;-;-;-;-;- + 9645 NaN NaN 573587.6 NaN 9856 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12936 59.06 NaN 558930 35 0 59193 0.262 + 26882 SYIRVAVSL 9 85 504.29791571797836 1006.5812785027567 2 504.2977294921875 MULTI HCD FTMS 0 0 0 12933 163149.296875 0.5536605404025043 -1 0.01610565185546875 3 Unmodified _SYIRVAVSL_ ENSG00000112414|ENST00000367609|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF;ENST00000545477.1_1_6:142630681-142703096:+|nuORF;nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6 46.0223103267499 0.037698999139422325 2 {[TV]|[{I|L}S]}YRVAVS{I|L} 9 2 + 66.008 0 0 6.5577 6.5577 85.211 0 0 0 0.6942140875846974 13.237862141609185 0.6942140875846974 0.6942140875846974 0 1.610924374808178 1.3010299956639813 0.4247425010840047 0 {[TV]|[{I|L}S]}YRVAVS{I|L};[YT]VRVAVS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}RVAVS{I|L};{[TV]|[{I|L}S]}YRAA{I|L}T{I|L};[YT]VRAA{I|L}T{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}RAA{I|L}T{I|L};{[TV]|[{I|L}S]}YRV[VG]T{I|L};[YT]VRV[VG]T{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}RV[VG]T{I|L};[{I|L}T]{I|L}[YQ]RT{I|L} 6.5577;6.4887;5.9146;5.0872;5.0182;4.4441;4.2419;4.1729;3.5988;3.2616 -;-;+;-;-;-;-;-;-;- + 529 NaN NaN 170777.9 NaN 9857 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12937 59.064 NaN 399730 35 0 38287 0.261 + 26841 SYIHYVFRL 9 81 599.3247283581795 1196.634903783159 2 599.3240966796875 MULTI HCD FTMS 0 0 0 12933 105604.9921875 0.3606184807594399 4 -0.09397506713867188 4 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 63.960520009940105 0.0120409805053046 2 SY{I|L}HYV{M(Oxidation (M))|F}R{I|L} 9 0 + 88.699 0 0 7.4124 7.4124 94.741 0 0 0 65.99636758357589 7.504311474114331 7.504311474114331 30.656505091918035 0 2.4876954943324545 2 0 0 + + SY{I|L}HYV{M(Oxidation (M))|F}R{I|L};SYV[WQ]V{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYHTM{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HYV{M(Oxidation (M))|F}R{I|L};[YV]THYV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYH{I|L}[MT];SV[WQ]YV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYH{M(Oxidation (M))|F}VV;SVY[WQ]V{M(Oxidation (M))|F}R{I|L};{[WN]|[YH]}{[TV]|[{I|L}S]}YV{M(Oxidation (M))|F}R{I|L} 7.4124;4.8505;4.7648;4.55;4.3223;4.0559;3.8294;2.9035;2.8242;2.5983 +;-;-;+;-;-;-;-;-;- + 417 + NaN NaN 144218.7 NaN 9858 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12938 59.067 NaN 302110 35 0 19558 0.261 + 19865 NYAWVYYHM 9 67 631.7687083198309 1261.5228637064617 2 631.7681884765625 MULTI HCD FTMS 0 0 0 12933 113383.3515625 0.34928205586830535 15 -0.3832359313964844 5 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 89.42679046578446 0.004540987215715461 2 [YN]AWYVYH{M(Oxidation (M))|F} 9 2 + 86.565 0 0 6.8619 6.8619 88.699 0 0 0 12.245462655597095 12.245462655597095 12.245462655597095 8.010299956639813 0 2.6237125054200234 1.6989700043360187 0 1.0484550065040281 [YN]AWYVYH{M(Oxidation (M))|F};[YN]WAYVYH{M(Oxidation (M))|F};[YN]AWYTW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]ADAYV{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AE[YR]{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]WT{[QS]|[NT]}[WM]{M(Oxidation (M))|F};[YN]AWY[WE][KC] 6.8619;6.227;5.0207;4.4516;3.7175;2.8994;2.5456 -;-;-;-;-;-;- 374 NaN NaN 134148.7 NaN 9859 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12939 59.07 NaN 228270 35 0 15909 0.262 + 8925 HPDLLIKVL 9 60 524.3316519591403 1046.6487509850806 2 524.3314208984375 MULTI HCD FTMS 0 0 0 12933 86857.03125 0.5528601913212432 -6 0.13966751098632812 6 Unmodified _HPDLLIKVL_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 45.69961567697781 0.039180348357221985 2 KV{I|L} 3 6 32.435 0 0 3.0989 0 0 688.390747094341 0 688.390747094341 0 14.247425010840047 0 0 0 0.9247425010840047 0 0 0 + KV{I|L} 3.0989 + + 66 NaN NaN 124582.3 NaN 9860 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12940 59.074 NaN 306760 35 0 33464 0.261 + 18035 MLQRQTTLE 9 78 560.2952627154932 1118.5759724977863 2 560.2880859375 MULTI HCD FTMS 0 0 0 12933 13312.5517578125 0.01206583297513621 -10 0.24062728881835938 7 Unmodified _MLQRQTTLE_ REV__ENSG00000126001|ENST00000397527|CEP250;REV__nc|ENSG00000126001|Q9BV73-2|CEP250 16.942295170755138 0.21397866736869717 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}ER{[QN]|[E{I|L}]|[KN]} 9 -1 + 38.999 0 0 3.4864 3.4864 89.311 0 0 0 13.046715133692473 7.457443841136502 7.457443841136502 38.9985126032255 0 0 2 0.6747425010840047 0.2742275032520141 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}ER{[QN]|[E{I|L}]|[KN]} 3.4864 - 131 + NaN NaN 130996.3 NaN 9861 3077 12933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12942 59.079 NaN 909910 35 0 109800 0.327 + 4684 EYPDRIMNTF 10 70 643.297686036255 1284.5808191393098 2 643.2977905273438 MULTI HCD FTMS 0 0 0 12941 449706.65625 0.1675968575402143 13 -0.3247489929199219 1 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 132.13456570155267 1.54189796951664E-05 2 [YE]PDR{I|L}MNT{M(Oxidation (M))|F} 10 0 + 84.649 0 0 6.5896 6.5896 91.831 0 0 0 21.253672211068583 21.253672211068583 21.253672211068583 15.471736348700105 0 2.2034021960761265 1.6989700043360187 1.5941876774005248 0.9559771852360797 + + [YE]PDR{I|L}MNT{M(Oxidation (M))|F};[YE]PDR{I|L}MGGT{M(Oxidation (M))|F};[YE]A[KQ][PG]MNT{M(Oxidation (M))|F};[YE]P{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QN]|[E{I|L}]|[KN]}NT{M(Oxidation (M))|F};[YE]A[KQ][PG]MA[YQ];[{M(Oxidation (M))|F}T]D[KQ][PG]MNT{M(Oxidation (M))|F};[YE]P[RN][YV]D{[ET]|[MV]};[YE]A[KQ][Y{I|L}]P[C(Carbamidomethyl (C))N];[{M(Oxidation (M))|F}T]D[KQ][PG]MA[YQ] 6.5896;5.3852;4.9351;3.8124;2.7595;2.6836;1.9135;1.551;0.50806 +;-;-;-;-;-;-;-;- + 223 + NaN NaN 222649.6 NaN 9862 3078 12941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12943 59.083 NaN 558840 35 0 31695 0.262 + 601 APFKFDMEL 9 96 557.2676362448831 1112.520719556566 2 557.2676391601562 MULTI HCD FTMS 0 0 0 12941 207605.796875 0.4253608906974304 3 -0.06835556030273438 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 65.47368725323818 0.010552856507075443 2 K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 6 3 54.518 0 0 4.9004 0 0 315.15709120918126 0 315.15709120918126 0 19.5646081018038 0 0 0 1.6505149978319906 0 0.28872548999643577 0 + K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 4.9004 + + 791 NaN NaN 183203.2 NaN 9863 3078 12941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12944 59.087 NaN 307140 35 0 24544 0.261 + 7002 FPWGDGNHTL 10 77 572.2645186509936 1142.5144843687872 2 572.2650756835938 MULTI HCD FTMS 0 0 0 12941 92353.1328125 0.5597448447860235 8 -0.1956787109375 3 Unmodified _FPWGDGNHTL_ ENSG00000111775|ENST00000229379|COX6A1 41.95555342248728 0.12843670176738353 2 {I|L}MW{[SA]|[TG]}G 6 7 50.957 0 0 4.4601 0 0 0 494.17661462955317 494.17661462955317 36.35267736209941 0 0 0 0 0.8494850021680094 1.5228787452803376 1.305462187404089 0 {I|L}MW{[SA]|[TG]}G 4.4601 - 354 + NaN NaN 126315 NaN 9864 3078 12941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12945 59.09 NaN 361040 35 0 67980 0.261 + 31791 VYLTHLDYV 9 80 561.794781470671 1121.5750100081418 2 561.7946166992188 MULTI HCD FTMS 0 0 0 12941 105417.671875 1 0 0 4 Unmodified _VYLTHLDYV_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF 21.74664581756881 0.17247014374749275 2 YV 2 7 25.969 0 0 2.3154 0 0 841.4347716141501 0 841.4347716141501 0 11.70432836127297 0 0 0 0.5 0 0 0 + YV 2.3154 + + 94 NaN NaN 139151.7 NaN 9865 3078 12941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12946 59.093 NaN 245480 35 0 25237 0.261 -1 FPAGYMYPSM 10 59 598.243700017282 1194.4728471013639 2 598.2433471679688 MULTI HCD FTMS 0 0 0 12941 60245.34765625 0.2717210389142891 31 -0.7751655578613281 5 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 26.88365393820708 0.25965138844209146 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 42.251 0 0 3.5372 0 0 535.2423573224625 0 535.2423573224625 0 36.76599703664159 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.5372 + + 46 NaN NaN 125622.6 NaN 9866 3078 12941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12947 59.096 NaN 96882 35 0 9132.8 0.263 + 27776 TAVGSGVVTL 10 52 452.26106728196453 NaN 0 452.2613525390625 PEAK HCD FTMS 0 0 0 12941 57418.1328125 0.8218636923475365 -2 0.04172515869140625 6 Unmodified _TAVGSGVVTL_ ENSG00000144136|ENST00000272542|SLC20A1;ENSG00000168575|ENST00000520262|SLC20A2;SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant 38.175570920033316 0.14661983335725942 2 TVR 3 8 29.935 0 0 3.3169 0 0 131.09618850651208 412.1828707330688 543.2790592395809 0 0 0 0 0 1.5 0 0.3252574989159953 0 TVR 3.3169 - 29 + NaN NaN 103849.8 NaN 9867 3078 12941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12949 59.101 NaN 474110 35 0 65883 0.327 -1 0 83 582.3447276431323 1162.6749023530645 2 582.3449096679688 MULTI HCD FTMS 0 0 0 12948 184045.015625 0.03899524419406958 24 -0.5950927734375 1 NaN NaN 2 WV{I|L}DK{I|L} 6 -1 51.363 0 0 4.4177 0 0 390.2269764630875 0 390.2269764630875 0 28.937528704987297 0 0 0 1.3494850021680094 0 0.2742275032520141 0 WV{I|L}DK{I|L} 4.4177 - 606 NaN NaN 179887.9 NaN 9868 3079 12948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12950 59.106 NaN 371630 35 0 34115 0.261 + 16822 LYECTGQFDF 10 66 611.7578124386359 1221.5010719440718 2 611.758056640625 MULTI HCD FTMS 0 0 0 12948 126124.6328125 0.42355984510845723 7 -0.17292022705078125 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 41.95555342248728 0.12843670176738353 2 [YV]{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 + 69.636 0 0 5.7009 5.7009 84.61 0 0 0 2.719932023307834 16.061603143133496 2.719932023307834 2.719932023307834 0 1.5 1.154901959985743 0.5796896906561032 0 [YV]{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][CS]DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QE[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][CS]DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.7009;5.4782;5.1506;4.947;4.947;4.7279;4.4789;4.4003;4.1968;3.7287 -;-;-;-;-;-;-;-;-;- 415 NaN NaN 152602 NaN 9869 3079 12948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12951 59.109 NaN 312990 35 0 22832 0.261 + 26842 SYIHYVFRL 9 66 599.3247283581795 1196.634903783159 2 599.32568359375 MULTI HCD FTMS 0 0 0 12948 62071.03125 0.21195930727218226 6 -0.1434478759765625 3 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 43.77239144664712 0.04802738721622131 2 [YV]THYV{M(Oxidation (M))|F}R{I|L} 9 2 + 61.265 0 0 5.1197 5.1197 84.621 0 0 0 1.6234028829723712 39.13689046268914 1.6234028829723712 5.145228064085998 0 2.3182503180159344 1.5228787452803376 0 0 [YV]THYV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYHTM{I|L};[YV]S[WQ]V{M(Oxidation (M))|F}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}HYV{M(Oxidation (M))|F}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V[WQ]V{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]VYH{I|L}[MT];{[WN]|[YH]}{[TV]|[{I|L}S]}YV{M(Oxidation (M))|F}R{I|L};[H{I|L}][{I|L}A]V[WQ]SM{I|L};[H{I|L}][{I|L}A]V[WQ]V[MT] 5.1197;4.6898;4.4397;4.0619;3.3818;3.1643;3.0162;2.9128;1.3873 -;-;-;+;-;-;-;-;- + 198 NaN NaN 129280.2 NaN 9870 3079 12948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12952 59.113 NaN 243460 35 0 29457 0.262 + -1 PLSCVGCYL 9 69 506.2337695405634 NaN 0 506.2338562011719 PEAK HCD FTMS 0 0 0 12948 61782.51953125 0.397142485950394 33 -0.8243675231933594 4 Carbamidomethyl (C) _PLSC(Carbamidomethyl (C))VGCYL_ REV__ENSG00000139726|ENST00000280557|DENR;REV__ENST00000539463.1_1_12:123238248-123247514:+|nuORF 12.531546534597751 0.23452071659215576 2 Y 1 -1 11.99 0 0 1.1866 0 0 131.09380312869138 713.2725199605285 844.3663230892198 0 0 0 0 0 0.5 0 0 0 Y 1.1866 + + 5 + NaN NaN 120113.5 NaN 9871 3079 12948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12954 59.117 NaN 847530 35 0 109560 0.327 + 10557 IPILYEHQL 9 86 563.3187796739405 1124.623006414681 2 563.3186645507812 MULTI HCD FTMS 0 0 0 12953 294562.59375 0.34266224266804457 -5 0.1066436767578125 1 Unmodified _IPILYEHQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 142.0795815696625 1.719916958814042E-05 2 {I|L}P{I|L}{I|L}YEHQ{I|L} 9 0 + 129.32 0 0 11.499 11.499 98.675 0 0 0 113.22437456189243 25.95483957839336 25.95483957839336 36.67612793400545 0 3.1989700043360187 1.6989700043360187 1.566901560044258 1.8807196863200843 + + {I|L}P{I|L}{I|L}YEHQ{I|L};[{I|L}P]{I|L}{I|L}YEHQ{I|L};[{I|L}P]{I|L}{I|L}YEH[AG]{I|L};{I|L}PY{I|L}{I|L}EHQ{I|L};[{I|L}P]{I|L}Y{I|L}EHQ{I|L};{I|L}PWE{I|L}N{I|L}Q{I|L};{I|L}{I|L}P{I|L}YEHQ{I|L};{I|L}P{I|L}[WE]N{I|L}Q{I|L};[{I|L}P]{I|L}Y{I|L}EH[AG]{I|L};{I|L}{I|L}P{I|L}YEH[AG]{I|L} 11.499;8.2377;7.4189;7.2032;7.1012;7.0592;6.7473;6.3049;6.2824;5.9286 +;+;-;-;-;-;-;-;-;- + 850 + NaN NaN 219169 NaN 9872 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12955 59.122 NaN 826610 35 0 99065 0.261 + 5929 FPDPAGKLNQF 11 84 617.316973191258 1232.6193934493158 2 617.3167724609375 MULTI HCD FTMS 0 0 0 12953 289170.78125 0.15558475642600178 -10 0.2302398681640625 2 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 128.5786326129116 0.010221740825472215 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}NQ{M(Oxidation (M))|F} 11 0 + 80.863 0 0 6.5602 6.5602 85.074 0 0 0 0.3990889734888583 6.092145186756028 0.3990889734888583 0.3990889734888583 0 2.807902146726378 1.6989700043360187 0.7614393726401688 0.6989700043360187 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPQK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}N[AG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPAGK{I|L}GGQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPA[KA]VNQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPQK{I|L}NQ{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}PAGK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPQK{I|L}N[AG]{M(Oxidation (M))|F} 6.5602;6.5279;5.8653;5.8197;5.8197;5.7873;5.7004;5.3409;5.1633;5.1218 +;+;-;-;-;-;-;-;-;- + 1130 NaN NaN 219906.2 NaN 9873 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12956 59.125 NaN 354030 35 0 40765 0.261 + 7742 FYMDTSHLF 9 77 588.7550286745544 1175.4955044159087 2 588.7552490234375 MULTI HCD FTMS 0 0 0 12953 166683.375 0.5791844177944971 6 -0.15679550170898438 3 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 88.90359156742426 0.00455469703666567 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 75.517 0 0 6.4243 6.4243 91.591 0 0 0 68.52745011790198 7.816658315635081 7.816658315635081 16.052907715439716 0 2.5356668758921828 0 1.110924374808178 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];[DP][MN]DK{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[DP][MN]D{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]W[QT]GD{I|L}{M(Oxidation (M))|F} 6.4243;5.0587;4.6139;2.62;2.4702;1.8722 +;+;-;-;-;- + 293 + NaN NaN 138931.5 NaN 9874 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12957 59.129 NaN 624320 35 0 69904 0.261 + 28859 TVPFVYTQI 9 88 534.2934056234978 NaN 0 534.2808837890625 PEAK HCD FTMS 0 0 0 12953 22269.091796875 0.5837323854176042 1 -0.02947235107421875 4 Unmodified _TVPFVYTQI_ REV__ENSG00000173080|ENST00000368318|RXFP4 10.823927491677226 0.2427956001690155 2 {I|L}{[ES]|[DT]|[{I|L}C]}RWV 6 -1 12.224 0 0 1.1461 0 0 131.11953027198223 162.0231112115844 293.14264148356665 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}{[ES]|[DT]|[{I|L}C]}RWV 1.1461 - 284 + NaN NaN 181402.2 NaN 9875 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12958 59.132 NaN 439320 35 0 71177 0.261 + 12701 KWPDRITLL 9 78 571.3399750339152 1140.6653971346302 2 571.340087890625 MULTI HCD FTMS 0 0 0 12953 169143.125 0.7929612743215758 -4 0.08060836791992188 5 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 19.361941925380144 0.1930734562688509 2 KW 2 7 24.776 0 0 2.1721 0 0 0 823.4684765030015 823.4684765030015 11.868996603039719 0 0 0 0 0.3807196863200844 0 0 0 + KW 2.1721 + + 94 + NaN NaN 172515.5 NaN 9876 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12959 59.135 NaN 236380 35 0 16993 0.261 + 35861 YYQNYFEKL 9 52 634.3035096882438 1266.5924664432875 2 634.3038330078125 MULTI HCD FTMS 0 0 0 12953 109429.8359375 0.05235335310082431 29 -0.7362823486328125 6 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 63.227496030279354 0.01306643085373406 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 89.759 0 0 7.0867 7.0867 90.422 0 0 0 5.669015600442577 5.669015600442577 5.669015600442577 9.208187539523749 0 2.6677353201839438 2 0 1.0228787452803376 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L} 7.0867;6.3597;5.9121;5.1885 +;-;-;- + 92 NaN NaN 131104 NaN 9877 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12960 59.139 NaN 139200 35 0 36171 0.264 + 35104 YVDEGIQL 8 48 468.7372096903112 935.4598664474224 2 468.73699951171875 MULTI HCD FTMS 0 0 0 12953 85077.5703125 0.7995598941079174 1 -0.02947235107421875 7 Unmodified _YVDEGIQL_ BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant 11.640296217721598 0.50814828952472 2 {I|L}{I|L}Q{I|L} 4 5 32.295 0 0 3.4523 0 0 450.14875991035314 0 450.14875991035314 0 32.29486901908295 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}Q{I|L} 3.4523 - 14 NaN NaN 119164.7 NaN 9878 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12961 59.142 NaN 200510 35 0 32486 0.261 + 23087 REMAGVAF 8 60 440.72126228054947 NaN 0 440.7209777832031 PEAK HCD FTMS 0 0 0 12953 74036.1875 0.04020352999088532 34 -0.8639488220214844 8 Unmodified _REMAGVAF_ REV__ENSG00000159131|ENST00000381815|GART;REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF 14.581692164780916 0.38795613832665576 2 V 1 -1 9.732 0 0 1.1066 0 0 186.07965727418645 591.2569468314567 777.3366041056431 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.1066 + + 9 + NaN NaN 120003.7 NaN 9879 3080 12953 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12963 59.147 NaN 661250 35 0 79974 0.327 + 35028 YTHDREVVL 9 91 566.2932708553225 1130.5719887774449 2 566.7747192382812 MULTI HCD FTMS 0 0 0 12962 34687.63671875 0.5475962561583524 2 -0.038898468017578125 1 Unmodified _YTHDREVVL_ REV__ENSG00000110074|ENST00000263578|FOXRED1;REV__ENST00000534315.5_1_11:126141345-126145243:+|nuORF;REV__nc|ENSG00000110074|Q96CU9-3|FOXRED1 13.90604991867851 0.24021115267848145 2 SVS[YT]VSW 8 -1 40.232 0 0 3.5585 0 0 203.12680558199514 0 203.12680558199514 0 12.784255333566236 0 0 0 0 0 0.9876954943324545 0 SVS[YT]VSW 3.5585 - 1070 + NaN NaN 187565.7 NaN 9880 3081 12962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12964 59.151 NaN 375360 35 0 36277 0.261 + 34344 YPEEVSSMVL 10 59 585.2731630792459 1168.5317732252918 2 585.2735595703125 MULTI HCD FTMS 0 0 0 12962 131457.578125 0.7518551103727558 -1 0.02947235107421875 2 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 49.93300154707207 0.07803319134556608 2 [YT]{I|L}SS 5 7 56.51 0 0 4.836 0 0 0 614.246093933553 614.246093933553 31.293709283484077 0 0 0 0 1 2 0.7302046884880937 0 [YT]{I|L}SS 4.836 - 236 NaN NaN 150115.2 NaN 9881 3081 12962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12965 59.155 NaN 280090 35 0 78978 0.262 + 14155 LAFGKPLVE 9 70 487.2893296108616 972.5641062885232 2 487.2900390625 MULTI HCD FTMS 0 0 0 12962 57005.3671875 0.11096516368649234 14 -0.3677482604980469 3 Unmodified _LAFGKPLVE_ ENSG00000111271|ENST00000313698|ACAD10;ENST00000512792.2_1_12:112191278-112193633:+|nuORF;ENST00000547491.1_1_12:112186933-112194274:+|nuORF;nc|ENSG00000111271|Q6JQN1-5|ACAD10 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.7469 0 0 807.4853994787561 0 807.4853994787561 0 8.160320172748799 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7469 + + 139 + NaN NaN 127681.1 NaN 9882 3081 12962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12967 59.16 NaN 661380 35 0 94250 0.327 + 7471 FVVEHDFIM 9 80 576.7734074464107 1151.5322619596213 2 576.7734985351562 MULTI HCD FTMS 0 0 0 12966 226560.375 0.7588272586286533 -1 0.0128173828125 1 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 85.35673624503755 0.00464763827098139 2 [{M(Oxidation (M))|F}V]VE[HD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 [{M(Oxidation (M))|F}V] + + 50.252 5.2288 2.1243 4.3639 4.3639 61.4 0 0 0 0 43.26229158546596 0 0 0 2.1747425010840047 0 0.3054621874040891 0 + + [{M(Oxidation (M))|F}V]VE[HD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.3639 + + 65 + NaN NaN 187665.4 NaN 9883 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12968 59.164 NaN 550330 35 0 105530 0.261 + 9450 HPVSLEQYL 9 83 543.2850641565343 1084.5555753798685 2 543.28515625 MULTI HCD FTMS 0 0 0 12966 287887.75 0.6255214201722131 4 -0.11450576782226562 2 Unmodified _HPVSLEQYL_ ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF 58.678817012210395 0.019429721296335044 2 [YN][KA][VS]QY{I|L} 9 6 + 46.852 0 0 4.32 4.32 82.295 0 0 0 2.0763456383578927 4.473761927975417 2.0763456383578927 2.0763456383578927 0 1.305462187404089 1.0457574905606752 0.5941876774005248 0.3807196863200844 [YN][KA][VS]QY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{[QN]|[E{I|L}]|[KN]}QY{I|L};[YN][KS]{[VA]|[{I|L}G]}QY{I|L};{[QN]|[E{I|L}]|[KN]}YA[VS]QY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VSV[RD]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{[QN]|[E{I|L}]|[KN]}[AG]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[VS]QY{I|L};{[QN]|[E{I|L}]|[KN]}YA[VS][AG]Y{I|L};[Y{I|L}]N[YN]G[KT]{I|L};[YN]{I|L}[YN]G[KT]{I|L} 4.32;4.1285;3.9272;3.7451;3.4999;3.2795;2.943;2.8961;2.2949;1.8067 -;+;-;-;-;-;-;-;-;- + 981 NaN NaN 188005.6 NaN 9884 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12969 59.168 NaN 241370 35 0 13289 0.261 -1 CNQMCCEW 8 86 573.67737315929 NaN 0 573.3740234375 PEAK HCD FTMS 0 0 0 12966 12969.056640625 1 0 0 3 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))NQM(Oxidation (M))C(Carbamidomethyl (C))CEW_ ENST00000366672.4_1_1:230416982-230417132:+|nuORF 0.7936320650641473 0.38822285293237185 2 S 1 -1 9.2917 0 0 0.81127 0 0 854.2184415316675 201.06690393619377 1055.2853454678614 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.81127 - 55 + NaN NaN 117760.6 NaN 9885 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12970 59.171 NaN 466530 35 0 51691 0.261 + 17035 LYIVHPTMF 9 97 568.7939593012626 1135.573365669325 2 568.7939453125 MULTI HCD FTMS 0 0 0 12966 130652.2265625 0.3979340343825213 7 -0.18299484252929688 4 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 92.8221339359638 0.0044520161739443126 2 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 102.19 0 0 8.999 8.999 94.681 0 0 0 88.69579416317073 16.478174818886373 16.478174818886373 11.588709367037282 0 2.7614393726401687 1.6989700043360187 0.3252574989159953 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y{I|L}VHP{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{I|L}Y{I|L}VH{[{M(Oxidation (M))|F}C]|[YS]}{[QN]|[E{I|L}]|[KN]};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[YQ]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{M(Oxidation (M))|F};{I|L}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YQ]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}[WD][PA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]V[WE][PA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.999;7.9785;5.8718;5.0346;4.7195;3.9243;2.0057;0.88011 +;-;-;-;-;-;-;- + 926 + NaN NaN 175629.1 NaN 9886 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12971 59.174 NaN 630380 35 0 50642 0.261 + 24564 RYLNEFEEL 9 82 606.7980308009771 1211.5815086687542 2 606.7987060546875 MULTI HCD FTMS 0 0 0 12966 270003.65625 0.13901118883333094 16 -0.4297828674316406 5 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 45.739877483867886 0.03899552410870734 2 NE{M(Oxidation (M))|F}EE{I|L} 6 3 61.049 0 0 5.0388 0 0 432.247365903718 0 432.247365903718 0 40.287501541648325 0 0 0 1.5114393726401687 0 0.3807196863200844 0.4247425010840047 + NE{M(Oxidation (M))|F}EE{I|L} 5.0388 + + 1374 NaN NaN 189470.2 NaN 9887 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12972 59.178 NaN 410920 35 0 35071 0.261 + 9838 HYQDVSCLQF 10 69 620.2767498491384 1238.5389467650766 2 620.763427734375 MULTI HCD FTMS 0 0 0 12966 62929.68359375 0.46514901804755204 -2 0.04228973388671875 6 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 32.89776655970281 0.20703914202719614 2 {M(Oxidation (M))|F}QSSC{I|L}Q{M(Oxidation (M))|F} 8 4 69.093 0 0 5.5786 0 0 280.10591323066564 0 280.10591323066564 0 54.40018805667883 0 0 0 1.6989700043360187 0 0.4247425010840047 0 {M(Oxidation (M))|F}QSSC{I|L}Q{M(Oxidation (M))|F} 5.5786 - 842 NaN NaN 149792.5 NaN 9888 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12973 59.181 NaN 221730 35 0 16427 0.262 + 1495 AYTPFHAVL 9 62 509.7714760713858 1017.5283992095716 2 509.7715148925781 MULTI HCD FTMS 0 0 0 12966 87578.3046875 0.04770003336016898 27 -0.6939926147460938 7 Unmodified _AYTPFHAVL_ ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14 38.15118350030904 0.07383188072201104 2 TC{I|L} 3 7 42.435 0 0 4.1704 0 0 682.3794674012763 0 682.3794674012763 0 34.47621246364342 0 0 0 1 0 0.9247425010840047 0 TC{I|L} 4.1704 - 152 NaN NaN 118158 NaN 9889 3082 12966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12975 59.186 NaN 637340 35 0 239980 0.327 -1 0 69 427.30271260447546 852.5908722757509 2 427.3025817871094 MULTI HCD FTMS 0 0 0 12974 232163.046875 0.48553016721250447 8 -0.21749496459960938 1 NaN NaN 2 {I|L} 1 -1 13.099 0 0 1.5364 0 0 721.4965099484057 0 721.4965099484057 0 6.109243748081781 0 0 0 0 0 0 0 {I|L} 1.5364 - 24 + NaN NaN 185962.5 NaN 9890 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12976 59.19 NaN 808850 35 0 70632 0.261 + 32243 VYTTTVHWL 9 101 560.2952627154932 1118.5759724977863 2 560.2963256835938 MULTI HCD FTMS 0 0 0 12974 292040.46875 0.26469091591325367 -4 0.08449554443359375 2 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 97.07464715276575 0.004340583992084827 2 VYTTTVH{I|L}W 9 2 + 87.802 0 0 7.8495 7.8495 95.255 0 0 0 75.812453452631 9.559097988984206 9.559097988984206 26.890267361151047 0 1.5387254899964358 1.6989700043360187 0.8494850021680094 0 VYTTTVH{I|L}W;VYTNV[QP]{I|L}W;VYT[HV]{[DS]|[MA]|[CV]|TT}{I|L}W;VY{NN|[MP]|[D{I|L}]|[EV]}[HK]T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]T[VG][YR]YV;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}HVT[PS]YV;VYT[HV]PS{I|L}{[CT]|[{M(Oxidation (M))|F}G]};VYT[HV][{I|L}T]TW;VYT[HV][VG]T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV][YK]{[RE]|[WV]}YV 7.8495;5.4455;4.3178;3.8212;3.5635;3.5226;3.3952;3.364;3.3297;3.3003 -;-;-;-;-;-;-;-;-;- 2420 + NaN NaN 204818.6 NaN 9891 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12977 59.194 NaN 608450 35 0 122040 0.263 -1 HLKKEEKMTM 10 50 430.8883806921103 NaN 0 430.8880310058594 PEAK HCD FTMS 0 0 0 12974 118740.53125 0.3151750646782511 -57 1.489715576171875 3 Oxidation (M) _HLKKEEKM(Oxidation (M))TM_ nc|ENSG00000169435|Q6ZTQ3|RASSF6 0.6976657623105312 0.3395871838311286 2 G 1 -1 5.4846 0 0 0.63791 0 0 241.0207666559018 558.7058199518186 799.7265866077205 0 0 0 0 0 0 0 0 0 G 0.63791 - 1 + NaN NaN 176484.3 NaN 9892 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12978 59.197 NaN 531450 35 0 81868 0.261 + 24904 RYQWLWEF 8 55 409.8696992157377 1226.587268247413 3 409.8695983886719 MULTI HCD FTMS 0 0 0 12974 132035.53125 0.5688597935328057 -3 0.06837081909179688 4 Unmodified _RYQWLWEF_ REV__VPS25|p.P8L|1|0.17|ENSG00000131475|chr17:42773498-42773498|C/T|missense_variant 1.6526216038709556 0.5395404884934816 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3851 0 0 1061.508347814599 0 1061.508347814599 0 10.536049848239344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3851 + + 14 + NaN NaN 167217.3 NaN 9893 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12979 59.201 NaN 330720 35 0 35010 0.261 + -1 EDLPQLVVM 9 69 530.2729557672837 1058.5313586013674 2 530.2731323242188 MULTI HCD FTMS 0 0 0 12974 104381.046875 0.6722998710426424 9 -0.2503623962402344 5 Oxidation (M) _EDLPQLVVM(Oxidation (M))_ REV__ENSG00000144445|ENST00000281772|KANSL1L;REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L 27.628801355627647 0.12213550946336599 2 {I|L}VV{M(Oxidation (M))|F} 4 -1 47.18 0 0 4.4572 0 0 582.2656117169937 0 582.2656117169937 0 36.2113751626007 0 0 0 1.8252574989159953 0 0 0 {I|L}VV{M(Oxidation (M))|F} 4.4572 + + 143 NaN NaN 135918.5 NaN 9894 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12980 59.204 NaN 269610 35 0 46754 0.262 + 23793 RRPEVTVIPSF 11 67 434.2508555129683 1299.730737139105 3 434.251220703125 MULTI HCD FTMS 0 0 0 12974 75365.140625 0.5388319780524596 5 -0.134033203125 6 Unmodified _RRPEVTVIPSF_ REV__ENSG00000029534|ENST00000289734|ANK1;REV__ENSG00000151150|ENST00000280772|ANK3;REV__ENST00000465749.2_1_10:61846327-61848039:-|nuORF;REV__ENST00000524227.5_1_8:41525962-41555361:-|nuORF;REV__nc|ENSG00000029534|P16157-10|ANK1;REV__nc|ENSG00000029534|P16157-11|ANK1;REV__nc|ENSG00000029534|P16157-12|ANK1;REV__nc|ENSG00000029534|P16157-13|ANK1;REV__nc|ENSG00000029534|P16157-14|ANK1;REV__nc|ENSG00000029534|P16157-15|ANK1;REV__nc|ENSG00000029534|P16157-16|ANK1;REV__nc|ENSG00000029534|P16157-2|ANK1;REV__nc|ENSG00000029534|P16157-21|ANK1;REV__nc|ENSG00000029534|P16157-4|ANK1;REV__nc|ENSG00000029534|P16157-5|ANK1;REV__nc|ENSG00000029534|P16157-6|ANK1;REV__nc|ENSG00000029534|P16157-7|ANK1;REV__nc|ENSG00000029534|P16157-8|ANK1;REV__nc|ENSG00000029534|P16157-9|ANK1;REV__nc|ENSG00000029534|P16157|ANK1;REV__nc|ENSG00000151150|Q12955-4|ANK3;REV__nc|ENSG00000151150|Q12955-5|ANK3;REV__nc|ENSG00000151150|Q12955-6|ANK3;REV__nc|ENSG00000151150|Q12955-7|ANK3 4.11662792887243 0.40086653484894175 2 W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 8 -1 20.45 0 0 1.5734 0 0 129.0978119895122 0 129.0978119895122 0 5.845850974183335 0 0 0 0.3494850021680094 0 0 0 W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{I|L}R{M(Oxidation (M))|F} 1.5734 - 106 + NaN NaN 133350.9 NaN 9895 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12981 59.207 NaN 225950 35 0 18714 0.261 + -1 YINPHFMECTF 11 60 473.2024481093859 1416.5855149283577 3 473.2021179199219 MULTI HCD FTMS 0 0 0 12974 33058.71875 0.4266301287548023 1 -0.029510498046875 7 Oxidation (M) _YINPHFM(Oxidation (M))ECTF_ REV__ENSG00000184787|ENST00000345496|UBE2G2;REV__ENST00000491513.5_1_21:46191294-46199096:-|nuORF;REV__ENST00000497630.5_1_21:46191294-46221727:-|nuORF;REV__nc|ENSG00000184787|P60604-2|UBE2G2 2.6312355333042263 0.4073809613003177 2 {I|L}Y{I|L}A 4 -1 56.186 0 0 3.9663 0 0 0 953.2917381203779 953.2917381203779 32.99803764475705 0 0 0 0 0.4247425010840047 2 0 0 {I|L}Y{I|L}A 3.9663 - 35 + NaN NaN 138283.9 NaN 9896 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12982 59.211 NaN 79416 35 0 6510.2 0.261 + 21650 PYRLIFEKF 9 49 404.8973947492548 1211.6703548479643 3 404.89764404296875 MULTI HCD FTMS 0 0 0 12974 38027.9453125 0.0617419965880143 31 -0.7955780029296875 8 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 8.444304893310646 0.2870029342618836 2 KG{M(Oxidation (M))|F} 3 8 18.672 0 0 1.541 0 0 861.4761542637831 0 861.4761542637831 0 6.989700043360191 0 0 0 0 0 0 0 KG{M(Oxidation (M))|F} 1.541 - 18 + NaN NaN 102539.8 NaN 9897 3083 12974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12984 59.215 NaN 6538700 35 0 766120 0.327 + 27087 SYMGHFDLL 9 109 549.7498633743731 1097.4851738155462 2 549.7501831054688 MULTI HCD FTMS 0 0 0 12983 5227109 0.5688793256564341 4 -0.104522705078125 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 180.00974506902125 1.0762292318080308E-12 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 92.485 0 0 8.427 8.427 93.536 0 0 0 24.430899228263996 9.688105454342804 9.688105454342804 9.688105454342804 0 2.579689690656103 2 1.7179001828205482 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}{I|L}{I|L}D 8.427;7.5442;6.2009;3.4279;3.2537;3.2537;3.2045;3.1953;3.0416;2.9768 +;-;+;-;-;-;-;-;-;- + 4501 + NaN NaN 534431.5 NaN 9898 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12985 59.22 NaN 1734700 35 0 502880 0.261 + 32015 VYPLMKEYF 9 78 603.2992016658338 1204.5838503984676 2 603.299560546875 MULTI HCD FTMS 0 0 0 12983 1011099.0625 0.2518716954031131 22 -0.5563583374023438 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 75.76082778847304 0.0072241045649327805 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 79.351 0 0 6.5874 6.5874 85.031 0 0 0 18.1044805333903 47.728787452803374 18.1044805333903 0.13296575220323348 0 1.805462187404089 2 0.3494850021680094 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]{[SA]|[TG]}{M(Oxidation (M))|F}[{I|L}P]VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}KEYVY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{I|L}P][YV]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}[YV]KEY{M(Oxidation (M))|F} 6.5874;6.5764;5.06;4.8064;4.7472;3.8703;3.3726;3.2429;3.2319;3.0365 +;-;-;-;-;-;-;-;-;- + 970 NaN NaN 364386.8 NaN 9899 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12986 59.223 NaN 1712100 35 0 167360 0.261 + 13315 KYMDVQFDF 9 93 604.7681116504034 1207.5216703676067 2 604.7684326171875 MULTI HCD FTMS 0 0 0 12983 876203.8125 0.23148320727015792 10 -0.2731742858886719 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 103.82355648334675 0.003950725192926219 2 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 3 + 72.979 0 0 6.0437 6.0437 85.052 0 0 0 2.407745183588844 4.915215343448622 2.407745183588844 2.407745183588844 0 1.5 1.3979400086720375 0.9456290139465234 0.566901560044258 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.0437;5.8443;5.6559;5.6052;5.5673;5.196;5.0817;4.8933;4.8426;4.8153 -;+;-;-;-;-;-;-;-;- + 2369 NaN NaN 358649.6 NaN 9900 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12987 59.227 NaN 376140 35 0 43335 0.261 -1 YHNSVECLQM 10 61 620.2624777923189 NaN 0 620.2769165039062 PEAK HCD FTMS 0 0 0 12983 15921.826171875 0.5630084495727421 2 -0.0589141845703125 4 Oxidation (M) _YHNSVECLQM(Oxidation (M))_ ENSG00000115239|ENST00000263634|ASB3;ENST00000414369.2_1_2:53984069-54014663:-|nuORF;nc|ENSG00000115239|Q9Y575-3|ASB3 7.101721422024254 0.3341061997659158 2 Q{I|L}CS[NP]SC 8 -1 38.889 0 0 3.14 0 0 165.0526339729741 238.11982141666252 403.17245538963664 0 0 0 0 0 0 0 0.7742275032520141 0 Q{I|L}CS[NP]SC 3.14 - 392 + NaN NaN 148776.8 NaN 9901 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12988 59.23 NaN 201130 35 0 15906 0.261 + 19866 NYAWVYYHM 9 60 631.7687083198309 1261.5228637064617 2 631.7691650390625 MULTI HCD FTMS 0 0 0 12983 104364.203125 0.3214981999051578 22 -0.5563583374023438 5 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 70.71552829651908 0.008856681705782516 2 [YN]AW[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 66.149 0 0 5.2436 5.2436 85.985 0 0 0 4.731975075880328 3.2568864632742844 3.2568864632742844 8.010299956639813 0 2.3807196863200843 1.6989700043360187 0 0.6989700043360187 + + [YN]AW[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]};[YN]WA[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]};[YN]W[YT]WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AY{[RE]|[WV]}Y{[{M(Oxidation (M))|F}H]|[RQ]};[YN]AY{[RE]|[WV]}{[MG]|[TS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]W[YT][Y{I|L}][HC];{[WN]|[YH]}Y[YT]WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[WN]|[YH]}YA[YV]Y{[{M(Oxidation (M))|F}H]|[RQ]};{[WN]|[YH]}Y[YT][Y{I|L}][HC] 5.2436;4.6086;4.2503;3.9949;3.2817;2.7639;2.4688;2.0344;0.18972 +;-;-;-;-;-;-;-;- + 235 NaN NaN 137212.8 NaN 9902 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12989 59.233 NaN 369240 35 0 75462 0.263 + 19362 NPDPAVYQL 9 51 508.75588521398674 1015.4972174947735 2 508.7564392089844 MULTI HCD FTMS 0 0 0 12983 149434.078125 0.35076466540891205 -6 0.1367645263671875 6 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 38.175570920033316 0.07371992880350783 2 YQ{I|L} 3 6 35.445 0 0 3.4904 0 0 593.2806320408557 0 593.2806320408557 0 20.752574989159953 0 0 0 0.9247425010840047 0 0 0 + YQ{I|L} 3.4904 + + 74 NaN NaN 142491.5 NaN 9903 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12990 59.237 NaN 174380 35 0 9885.2 0.261 + 35295 YVYQRASRF 9 55 595.3088975409865 NaN 0 595.3092651367188 PEAK HCD FTMS 0 0 0 12983 11507.451171875 0.22361412766460045 1 -0.02944183349609375 7 Unmodified _YVYQRASRF_ REV__ENSG00000184083|ENST00000375180|FAM120C 4.3292370932331545 0.2742679634796037 2 DV 2 -1 7.9588 0 0 0.66959 0 0 648.378829162248 323.10334192447505 971.4821710867232 0 0 0 0 0 0 0 0 0 DV 0.66959 - 6 + NaN NaN 119141.6 NaN 9904 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12991 59.24 NaN 128880 35 0 9676.5 0.261 -1 0 43 590.5894981128368 NaN 0 590.5966796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 D 1 -1 5.4846 0 0 0.46512 0 0 260.6979648762611 800.4135836236936 1061.1115484999548 0 0 0 0 0 0 0 0 0 D 0.46512 - 3 + NaN NaN 101622.8 NaN 9905 3084 12983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12993 59.245 NaN 1060400 35 0 77287 0.327 + 602 APFKFDMEL 9 107 557.2678650960022 1112.5211772588043 2 557.2678833007812 MULTI HCD FTMS 0 0 0 12992 573205.1875 0.9383803631116064 -1 0.02944183349609375 1 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 133.0521902211835 0.0004198702180815479 2 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 95.037 0 0 8.5425 8.5425 93.989 0 0 0 11.004219312750465 11.004219312750465 11.004219312750465 11.004219312750465 0 3.1549471895720984 0 2.443672679568534 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};AP{M(Oxidation (M))|F}YQV{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L} 8.5425;7.5534;7.4783;6.6751;6.2602;6.2043;6.1851;5.9476;5.653;5.3819 +;-;+;-;-;-;-;-;-;- + 4097 + NaN NaN 255167.8 NaN 9906 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12994 59.249 NaN 629410 35 0 61405 0.261 + 4685 EYPDRIMNTF 10 76 643.297686036255 1284.5808191393098 2 643.2979736328125 MULTI HCD FTMS 0 0 0 12992 234106.015625 0.08724672406938676 20 -0.4907341003417969 2 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 103.82355648334675 5.879419037132958E-05 2 [YE][DP][R{I|L}]MNT{M(Oxidation (M))|F} 10 0 + 62.042 0 0 4.8297 4.8297 91.543 0 0 0 40.58809012214198 18.819459175083608 18.819459175083608 62.04174031726282 0 1.9604093769761874 1.6989700043360187 1.1549471895720984 0.6505149978319906 + + [YE][DP][R{I|L}]MNT{M(Oxidation (M))|F} 4.8297 + + 152 + NaN NaN 186072 NaN 9907 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12995 59.253 NaN 354340 35 0 44925 0.261 -1 0 76 582.3447276431323 1162.6749023530645 2 582.3448486328125 MULTI HCD FTMS 0 0 0 12992 166249.546875 0.03522476093975469 30 -0.7627754211425781 3 NaN NaN 2 V{I|L}DK{I|L} 5 -1 43.756 0 0 3.7634 0 0 576.3071766584 0 576.3071766584 0 23.26606256887672 0 0 0 1.2302046884880937 0 0 0 V{I|L}DK{I|L} 3.7634 - 255 NaN NaN 157540.9 NaN 9908 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12996 59.256 NaN 729890 35 0 62662 0.261 + 35024 YTGHLALTSGN 11 95 567.2849803172553 1132.5554077013105 2 567.303466796875 MULTI HCD FTMS 0 0 0 12992 31111.271484375 0.3040649176440513 -2 0.05895233154296875 4 Unmodified _YTGHLALTSGN_ ENSG00000204859|ENST00000377674|ZBTB48 18.373094154950223 0.29699704000378496 2 SVS[YT]VSW 8 10 33.228 0 0 2.9339 0 0 205.1106501921078 0 205.1106501921078 0 3.477255067070768 0 0 0 0 0 0.6139829889124311 0 SVS[YT]VSW 2.9339 - 1558 + NaN NaN 204077.5 NaN 9909 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12997 59.259 NaN 500250 35 0 37959 0.261 + 7391 FVIGREEVL 9 81 531.303555340997 1060.592557748794 2 531.3038330078125 MULTI HCD FTMS 0 0 0 12992 101905.46875 0.6802850585224871 1 -0.02947235107421875 5 Unmodified _FVIGREEVL_ ENSG00000103037|ENST00000219315|SETD6;ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6 39.94969957227396 0.06557568441294001 2 G{I|L}D{I|L} 4 7 41.687 0 0 3.9306 0 0 644.3497791974625 0 644.3497791974625 0 12.759373593845908 0 0 0 0.9247425010840047 0 0.28872548999643577 0 G{I|L}D{I|L} 3.9306 - 239 NaN NaN 165354.4 NaN 9910 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12998 59.263 NaN 308330 35 0 25013 0.261 + 8926 HPDLLIKVL 9 56 524.3316519591403 1046.6487509850806 2 524.3319091796875 MULTI HCD FTMS 0 0 0 12992 116050.78125 0.7386835147540775 2 -0.052257537841796875 6 Unmodified _HPDLLIKVL_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 69.10491478415734 0.009377850133389008 2 KV{I|L} 3 6 32.435 0 0 3.0989 0 0 688.390654658591 0 688.390654658591 0 6.716590673155736 0 0 0 0.9247425010840047 0 0 0 + KV{I|L} 3.0989 + + 31 NaN NaN 130380.1 NaN 9911 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 12999 59.266 NaN 287580 35 0 39374 0.262 + -1 LQQSLLAPSCF 11 77 421.88529110164325 1262.6340439051298 3 422.2291259765625 MULTI HCD FTMS 0 0 0 12992 9293.3232421875 0.1326160605468724 2 -0.052257537841796875 7 Carbamidomethyl (C) _LQQSLLAPSC(Carbamidomethyl (C))F_ REV__ENST00000264657.9_1_17:40467307-40467571:-|nuORF 6.234356020891411 0.3915788988406848 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2264 0 0 1097.554970884425 0 1097.554970884425 0 0.5360498482393439 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2264 + + 92 + NaN NaN 133037.8 NaN 9912 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13000 59.269 NaN 657220 35 0 162020 0.261 + 27415 SYTSGLETL 9 69 485.74014803698117 969.4657431407624 2 485.7400817871094 MULTI HCD FTMS 0 0 0 12992 214853.75 0.26271382094672074 -5 0.12732315063476562 8 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 136.33342141710068 0.00022087650154924235 2 {[{M(Oxidation (M))|F}C]|[YS]}TSG{I|L}ET{I|L} 9 0 + 70.16 0 0 7.237 7.237 95.013 0 0 0 4.4171776986915745 49.13425655227235 4.4171776986915745 41.35029351276791 0 2.1861818737241734 0 1.6237125054200234 0 + + {[{M(Oxidation (M))|F}C]|[YS]}TSG{I|L}ET{I|L};{[ET]|[MV]}{I|L}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))S]T{I|L};{[ET]|[MV]}{I|L}{M(Oxidation (M))|F}QT[MT];{[ET]|[MV]}{I|L}{M(Oxidation (M))|F}[AG]T[MT];[{I|L}T]E{I|L}[SG]T{[{M(Oxidation (M))|F}C]|[YS]};[MN]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{M(Oxidation (M))|F} 7.237;2.9718;1.9216;0.96625;0.64103;0.19079 +;-;-;-;-;- + 391 NaN NaN 199770 NaN 9913 3085 12992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13002 59.274 NaN 2539800 35 0 331980 0.327 + 5930 FPDPAGKLNQF 11 128 617.316973191258 1232.6193934493158 2 617.3167114257812 MULTI HCD FTMS 0 0 0 13001 1704481.625 0.9170752221641366 -4 0.11450576782226562 1 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 169.92337293158118 1.0481307152178776E-08 2 {M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F} 11 0 + 101.92 0 0 8.2687 8.2687 91.562 0 0 0 70.8508913228481 5.862435673934286 5.862435673934286 9.128498242811006 0 3.103917193908117 0 0.5994850021680094 2.5158715643802765 + + {M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPAGK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPQK{I|L}NQ{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}PAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPA[KA]VNQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}N[AG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPQK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPQK{I|L}NQ{M(Oxidation (M))|F} 8.2687;7.5281;7.0889;7.0207;6.7475;6.5607;6.3483;6.3483;6.2772;6.1498 +;-;+;-;-;-;-;-;-;- + 7321 + NaN NaN 485395.8 NaN 9914 3086 13001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13003 59.279 NaN 1388300 35 0 212210 0.261 + 10558 IPILYEHQL 9 90 563.3187796739405 1124.623006414681 2 563.3187866210938 MULTI HCD FTMS 0 0 0 13001 680882.875 0.7920654485402251 1 -0.022785186767578125 2 Unmodified _IPILYEHQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 155.02607137521346 3.513045939247001E-06 2 {I|L}P{I|L}{I|L}YEHQ{I|L} 9 0 + 134.43 0 0 11.953 11.953 97.02 0 0 0 100.81907991397158 26.68166467595377 26.68166467595377 16.206290716515923 0 3.1989700043360187 1.6989700043360187 1.7803695511246984 1.9049471895720984 + + {I|L}P{I|L}{I|L}YEHQ{I|L};{I|L}{I|L}P{I|L}YEHQ{I|L};[{I|L}P]{I|L}{I|L}YEHQ{I|L};{I|L}P{I|L}WEN{I|L}Q{I|L};{I|L}PWE{I|L}N{I|L}Q{I|L};[{I|L}P]{I|L}{I|L}YEH[AG]{I|L};[{I|L}P]{I|L}Y{I|L}EHQ{I|L};{I|L}PW{I|L}EN{I|L}Q{I|L};[{I|L}P]{I|L}Y{I|L}EH[AG]{I|L};[{I|L}P]{I|L}YE{I|L}HQ{I|L} 11.953;10.512;8.2984;7.8013;7.6194;7.4796;7.3185;6.7505;6.4997;6.4496 +;-;+;-;-;-;-;-;-;- + 1551 + NaN NaN 304363.2 NaN 9915 3086 13001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13004 59.282 NaN 701000 35 0 61001 0.261 + 18341 MPHDLITQL 9 92 534.2808979992893 1066.5472430653786 2 534.2813110351562 MULTI HCD FTMS 0 0 0 13001 286899.71875 0.8462678562803335 1 -0.022785186767578125 3 Unmodified _MPHDLITQL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}TTQ{I|L} 5 5 39.851 0 0 3.7365 0 0 458.2188893048844 0 458.2188893048844 0 6.456968882668043 0 0 0 0.8807196863200843 0 0.3252574989159953 0 {M(Oxidation (M))|F}TTQ{I|L} 3.7365 - 1067 NaN NaN 200567.7 NaN 9916 3086 13001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13005 59.286 NaN 391130 35 0 83904 0.261 + 12702 KWPDRITLL 9 65 571.3399750339152 1140.6653971346302 2 571.340087890625 MULTI HCD FTMS 0 0 0 13001 181391.3125 0.8503821027952698 2 -0.0456085205078125 4 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 19.361941925380144 0.1930734562688509 2 KWK 3 7 29.693 0 0 2.6031 0 0 0 695.3676851861936 695.3676851861936 20.14014361800122 0 0 0 0 0.3494850021680094 0 0 0 KWK 2.6031 - 151 + NaN NaN 154934.3 NaN 9917 3086 13001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13006 59.289 NaN 203070 35 0 12471 0.261 + 35862 YYQNYFEKL 9 59 634.3035096882438 1266.5924664432875 2 634.302978515625 MULTI HCD FTMS 0 0 0 13001 90624.34375 0.04335644138755731 35 -0.90716552734375 5 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 69.33821966488729 0.009302356455414924 2 YYQNY{M(Oxidation (M))|F}EK{I|L} 9 0 + 99.747 0 0 7.8752 7.8752 91.832 0 0 0 16.180540824916392 16.180540824916392 16.180540824916392 9.208187539523749 0 2.6549471895720984 2 0 0.7614393726401688 + + YYQNY{M(Oxidation (M))|F}EK{I|L};YY[AG]NY{M(Oxidation (M))|F}EK{I|L};YYQGGY{M(Oxidation (M))|F}EK{I|L};YY[AG]GGY{M(Oxidation (M))|F}EK{I|L};YY[YN]Q{M(Oxidation (M))|F}EK{I|L};YY[YN][AG]{M(Oxidation (M))|F}EK{I|L} 7.8752;7.1482;7.1482;5.8235;5.1003;4.3733 +;-;-;-;-;- + 141 NaN NaN 122449.5 NaN 9918 3086 13001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13007 59.292 NaN 219280 35 0 27233 0.261 + -1 EEMACQLMF 9 56 595.7285699330502 1189.4425869329002 2 595.7281494140625 MULTI HCD FTMS 0 0 0 13001 52836.40625 0.5768471654307593 -1 0.02947235107421875 6 Carbamidomethyl (C),2 Oxidation (M) _EEM(Oxidation (M))AC(Carbamidomethyl (C))QLM(Oxidation (M))F_ REV__ENSG00000134013|ENST00000389131|LOXL2 6.723162845929126 0.3000504726104499 2 YY[YC(Carbamidomethyl (C))]DPY{M(Oxidation (M))|F} 8 -1 + 46.833 0 0 3.9374 3.9374 89.991 0 0 0 10.915149811213496 42.22865638833312 10.915149811213496 46.832750158094996 0 1 1.5228787452803376 0 0 YY[YC(Carbamidomethyl (C))]DPY{M(Oxidation (M))|F} 3.9374 - 36 NaN NaN 131047.2 NaN 9919 3086 13001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13009 59.297 NaN 555400 35 0 70960 0.327 -1 FVADAANAILM 11 92 576.2898646116661 1150.565176290132 2 576.773193359375 MULTI HCD FTMS 0 0 0 13008 58603.0390625 0.9675227649429713 1 -0.022823333740234375 1 Oxidation (M) _FVADAANAILM(Oxidation (M))_ ENSG00000068097|ENST00000184956|HEATR6 17.11289562659939 0.30797719109864646 2 VYS{M(Oxidation (M))|F}TVHA 8 -1 53.007 0 0 4.6071 0 0 0 243.11403833560783 243.11403833560783 25.29528472004289 0 0 0 0 0.8609243748081782 1.0969100130080565 0 0 VYS{M(Oxidation (M))|F}TVHA 4.6071 - 959 + NaN NaN 186962.8 NaN 9920 3087 13008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13010 59.301 NaN 653970 35 0 64254 0.261 + 18857 NAELWQVSW 9 99 566.7753210247591 1131.5360891163182 2 566.7747192382812 MULTI HCD FTMS 0 0 0 13008 204092.046875 0.721909808383354 32 -0.8285751342773438 2 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 20.41453444215458 0.18397929046831515 2 {I|L}{I|L}SYTVSW 8 6 49.423 0 0 4.3677 0 0 164.02169810244942 0 164.02169810244942 0 29.756856815600653 0 0 0 1.3807196863200843 0 0.5796896906561032 0 {I|L}{I|L}SYTVSW 4.3677 - 1229 + NaN NaN 202477.4 NaN 9921 3087 13008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13011 59.305 NaN 528740 35 0 56341 0.261 + 31620 VYINTAQEF 9 81 542.7690314699639 1083.5235100067277 2 543.2855834960938 MULTI HCD FTMS 0 0 0 13008 27928.998046875 0.35404013339571194 -4 0.11120986938476562 3 Unmodified _VYINTAQEF_ ENSG00000095059|ENST00000210060|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS 100.0907132914201 0.004261551473353346 2 [Y{I|L}]VNTAEQ{M(Oxidation (M))|F} 9 4 + 87.577 0 0 8.0826 8.0826 87.735 0 0 0 19.20818753952375 14.973024840566467 14.973024840566467 0.4659780392387347 0 2.274227503252014 1.5228787452803376 0.6747425010840047 0.3807196863200844 [Y{I|L}]VNTAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTAQE{M(Oxidation (M))|F};[Y{I|L}]NVTAEQ{M(Oxidation (M))|F};[Y{I|L}]NVTAQE{M(Oxidation (M))|F};[Y{I|L}]VNTAE[AG]{M(Oxidation (M))|F};[Y{I|L}]VGGTAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTA[AG]E{M(Oxidation (M))|F};[Y{I|L}]VGGTAQE{M(Oxidation (M))|F};[Y{I|L}]NVTAE[AG]{M(Oxidation (M))|F};[Y{I|L}]GGVTAEQ{M(Oxidation (M))|F} 8.0826;8.0396;7.4128;7.3698;7.2328;7.2328;7.1898;7.1898;6.5629;6.5629 -;-;-;-;-;-;-;-;-;- 2951 NaN NaN 169081 NaN 9922 3087 13008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13012 59.308 NaN 237260 35 0 17731 0.261 + 7743 FYMDTSHLF 9 66 588.7550286745544 1175.4955044159087 2 588.75537109375 MULTI HCD FTMS 0 0 0 13008 40513.85546875 0.14077584997471027 13 -0.3313865661621094 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 48.345845343767074 0.03388484103555672 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 0 + 40.8 0 0 3.4709 3.4709 87.419 0 0 0 34.34623773781176 3.65279269351241 3.65279269351241 15.9176003468815 0 1.1237125054200234 0 0 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}D[NG][PG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DT[HA][Y{I|L}];{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{[NV]|[RG]}[DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{[NV]|[RG]}{[{M(Oxidation (M))|F}D]|MM}[QP] 3.4709;2.1167;2.109;1.6445;1.3885 +;-;-;-;- + 189 + NaN NaN 126799.4 NaN 9923 3087 13008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13013 59.312 NaN 92535 35 0 21500 0.263 + 35105 YVDEGIQL 8 46 468.7372096903112 935.4598664474224 2 468.73736572265625 MULTI HCD FTMS 0 0 0 13008 66726.203125 0.6270935536696881 8 -0.21763992309570312 5 Unmodified _YVDEGIQL_ BTNL3|p.G148E|1|0.31|ENSG00000168903|chr5:180997258-180997258|G/A|missense_variant 15.847184025352803 0.47719562709667024 2 Q{I|L}Q{I|L} 4 5 34.553 0 0 3.6936 0 0 435.1725025861344 0 435.1725025861344 0 19.06804392152253 0 0 0 0.7614393726401688 0 0 0 Q{I|L}Q{I|L} 3.6936 - 27 NaN NaN 102537.5 NaN 9924 3087 13008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13014 59.315 NaN 317930 35 0 30876 0.261 + -1 EPNGCEFNG 9 70 512.1955897554491 1022.3766265776982 2 512.1953735351562 MULTI HCD FTMS 0 0 0 13008 96208.9375 0.6770041085080652 -2 0.052257537841796875 6 Carbamidomethyl (C) _EPNGC(Carbamidomethyl (C))EFNG_ REV__ENSG00000161904|ENST00000293760|LEMD2;REV__ENST00000511171.5_1_6:33747875-33748949:-|nuORF;REV__ENST00000514636.1_1_6:33747875-33752267:-|nuORF;REV__LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant 1.4819007175156935 0.3397831423917744 2 {I|L}TEE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 6 -1 19.13 0 0 1.8711 0 0 272.0331340013293 0 272.0331340013293 0 4.348331157524971 0 0 0 0 0 0 0 {I|L}TEE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.8711 - 110 + NaN NaN 145678.2 NaN 9925 3087 13008 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13016 59.32 NaN 192570 35 0 22466 0.327 + 31915 VYNRAALLW 9 64 553.3114753616424 1104.6083977900846 2 553.3107299804688 MULTI HCD FTMS 0 0 0 13015 28369 0.3860696348148558 -1 0.022823333740234375 1 Unmodified _VYNRAALLW_ ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2 23.1484247019978 0.1603590852062899 2 {I|L}{I|L}W 3 6 39.45 0 0 3.5714 0 0 674.346971580275 0 674.346971580275 0 31.378493940035455 0 0 0 1.3252574989159953 0 0 0 + {I|L}{I|L}W 3.5714 + + 274 NaN NaN 125096.1 NaN 9926 3088 13015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13017 59.324 NaN 157470 35 0 16169 0.261 + 24752 RYMVHLLEL 9 52 587.3265145101781 NaN 0 587.3256225585938 PEAK HCD FTMS 0 0 0 13015 26834.1484375 0.39206514536770115 1 -0.02288055419921875 2 Unmodified _RYMVHLLEL_ ENSG00000137814|ENST00000260372|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2 13.042465956692817 0.23204487237355156 2 E{I|L}{I|L}H 4 7 16.553 0 0 1.4116 0 0 131.09357245171992 546.2506807916624 677.3442532433824 0 0 0 0 0 0.23965182871044374 0 0 0 E{I|L}{I|L}H 1.4116 - 17 + NaN NaN 111205.1 NaN 9927 3088 13015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13018 59.328 NaN 146220 35 0 35209 0.263 + 23088 REMAGVAF 8 46 440.72126228054947 NaN 0 440.720703125 PEAK HCD FTMS 0 0 0 13015 92344.3515625 0.050145328019920346 42 -1.1146278381347656 3 Unmodified _REMAGVAF_ REV__ENSG00000159131|ENST00000381815|GART;REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF 14.581692164780916 0.38795613832665576 2 V 1 -1 9.732 0 0 1.1066 0 0 186.08173246949895 591.2573722435443 777.3391047130433 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.1066 + + 9 + NaN NaN 112545.3 NaN 9928 3088 13015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13019 59.331 NaN 215230 35 0 10505 0.261 + 26843 SYIHYVFRL 9 75 599.3247283581795 1196.634903783159 2 599.3252563476562 MULTI HCD FTMS 0 0 0 13015 52720.69140625 0.18002989485339416 15 -0.37656402587890625 4 Unmodified _SYIHYVFRL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 32.78568957990786 0.09846250359632436 2 YHTM{I|L} 5 6 48.315 0 0 4.0376 0 0 533.3345204084 0 533.3345204084 0 27.8520366087006 0 0 0 0.8494850021680094 0 0.4247425010840047 0 YHTM{I|L} 4.0376 - 176 NaN NaN 129686.9 NaN 9929 3088 13015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13020 59.335 NaN 110110 35 0 12499 0.261 -1 SAFPGIDEAM 10 42 527.231279020924 1052.448005108648 2 527.2310791015625 MULTI HCD FTMS 0 0 0 13015 21277.3359375 0.5731435382593182 3 -0.08346176147460938 5 Oxidation (M) _SAFPGIDEAM(Oxidation (M))_ ENSG00000198356|ENST00000357332|GET3;ENST00000590633.1_1_19:12848319-12856427:+|nuORF 5.731851221503515 0.44496410492002586 2 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.33207 0 0 362.1374715166542 540.2427462213499 902.3802177380041 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33207 + + 8 + NaN NaN 112795.6 NaN 9930 3088 13015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13021 59.338 NaN 115990 35 0 11033 0.261 -1 MCAKMSSF 8 53 489.19836270884826 NaN 0 488.83575439453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))AKMSSF_ ENSG00000128731|ENST00000261609|HERC2;ENST00000566635.5_1_15:28356911-28362639:-|nuORF;ENST00000568206.1_1_15:28362108-28362639:-|nuORF 5.230669730166228 0.38822285293237185 2 RVPVS 5 -1 7.0783 0 0 0.72496 0 0 185.9352387627402 249.0878084772094 435.0230472399496 0 0 0 0 0 0 0 0 0 RVPVS 0.72496 - 21 + NaN NaN 99912.2 NaN 9931 3088 13015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13023 59.343 NaN 1775300 35 0 178340 0.327 + 32244 VYTTTVHWL 9 110 560.2952627154932 1118.5759724977863 2 560.2953491210938 MULTI HCD FTMS 0 0 0 13022 939743.5 0.8517366404840997 2 -0.060581207275390625 1 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 179.22989800431262 1.129651853483991E-12 2 VYTTTVHW{I|L} 9 0 + 103.34 0 0 9.2385 9.2385 95.117 0 0 0 84.25452194351539 7.463352341680462 7.463352341680462 12.258177263343413 0 2.48239816956497 1.6989700043360187 1.089136830878453 0 + + VYTTTVHW{I|L};VYTTTHVW{I|L};[YV]TTTVHW{I|L};[YT]VTTVHW{I|L};VYT{[NV]|[RG]}[QP]W{I|L};[YV]TT[YR]{[MS]|[{M(Oxidation (M))|F}A]}V;VY[{M(Oxidation (M))|F}V]GVHGE{I|L};[YV][YK]{[RE]|[WV]}YV;VY[{M(Oxidation (M))|F}V]VGHGE{I|L};[YV]G[{M(Oxidation (M))|F}V]VH{[CP]|[EA]}V 9.2385;8.1427;7.664;5.0025;4.8725;4.6576;4.526;4.1116;3.8895;3.8884 +;-;+;-;-;-;-;-;-;- + 8231 + NaN NaN 361655.9 NaN 9932 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13024 59.347 NaN 474590 35 0 43442 0.261 + 24565 RYLNEFEEL 9 75 606.7980308009771 1211.5815086687542 2 606.798828125 MULTI HCD FTMS 0 0 0 13022 200958.5 0.10346333964195321 23 -0.5829582214355469 2 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 53.40400417844725 0.026808823219830042 2 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L} 9 2 + 78.577 0 0 6.4855 6.4855 89.371 0 0 0 13.089767685839533 56.845216569199536 13.089767685839533 9.208187539523749 0 1.4604093769761874 1.0457574905606752 0.3807196863200844 0.7134679910804405 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L};[Y{I|L}]RGGE{M(Oxidation (M))|F}EE{I|L};[VP][HV]NE{M(Oxidation (M))|F}EE{I|L};{[{M(Oxidation (M))|F}D]|MM}[RK]E{M(Oxidation (M))|F}EE{I|L};[VP][HV]GGE{M(Oxidation (M))|F}EE{I|L} 6.4855;5.7254;5.1108;4.3863;3.7655 -;-;-;-;- 841 NaN NaN 153605.8 NaN 9933 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13025 59.351 NaN 251460 35 0 43434 0.264 + 12665 KWFFQKLRF 9 70 433.91680466671517 1298.7285846003456 3 433.9166564941406 MULTI HCD FTMS 0 0 0 13022 61110.1328125 0.07362929961726794 43 -1.1474266052246094 3 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 41.95555342248728 0.056367691549927025 2 KW 2 7 25.217 0 0 1.9416 0 0 0 981.5311668671504 981.5311668671504 -0.22038431917139434 0 -0.22038431917139434 0 0 0.4247425010840047 0 0 0 + KW 1.9416 + + 56 + NaN NaN 119574.5 NaN 9934 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13026 59.354 NaN 330980 35 0 46625 0.261 + 4374 EWPKHWPTF 9 53 409.8696992157377 1226.587268247413 3 409.8698425292969 MULTI HCD FTMS 0 0 0 13022 80518.140625 0.34690308296527506 3 -0.09344863891601562 4 Unmodified _EWPKHWPTF_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF 2.282774691075616 0.33371192131023203 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3851 0 0 1061.508347814599 0 1061.508347814599 0 10.536049848239344 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3851 + + 8 + NaN NaN 134702.6 NaN 9935 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13027 59.357 NaN 316010 35 0 26634 0.261 -1 FYMDTSHLF 9 72 588.7550286745544 1175.4955044159087 2 588.7548217773438 MULTI HCD FTMS 0 0 0 13022 65052.7890625 0.22604270977277904 15 -0.3765068054199219 5 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 28.486842064014134 0.11819662193267319 2 CSY{M(Oxidation (M))|F} 4 -1 28.704 0 0 2.4419 0 0 657.3593847320828 0 657.3593847320828 0 12.009497336995732 0 0 0 0 0 0.8807196863200843 0 CSY{M(Oxidation (M))|F} 2.4419 - 86 NaN NaN 136228.6 NaN 9936 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13028 59.361 NaN 227980 35 0 22371 0.261 + 16823 LYECTGQFDF 10 58 611.7578124386359 1221.5010719440718 2 611.75830078125 MULTI HCD FTMS 0 0 0 13022 48428.26171875 0.16263489990063737 17 -0.428955078125 6 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 17.44264345198275 0.3479594151168503 2 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 47.127 0 0 3.8581 0 0 305.137010642775 0 305.137010642775 0 45.533504132662586 0 0 0 2.2302046884880937 0 0 0 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.8581 - 84 NaN NaN 119683.1 NaN 9937 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13029 59.364 NaN 210880 35 0 19515 0.261 -1 MMNNTDFLM 9 60 595.7285699330502 1189.4425869329002 2 595.7296752929688 MULTI HCD FTMS 0 0 0 13022 59331.72265625 0.6477604830359138 2 -0.060581207275390625 7 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))MNNTDFLM(Oxidation (M))_ nc|ENSG00000291085|Q9H0A3|TMEM191A 6.2057823575117 0.30397260197431997 2 DPY{M(Oxidation (M))|F} 4 -1 34.949 0 0 2.9382 0 0 649.2203428167758 0 649.2203428167758 0 27.95880017344075 0 0 0 1 0 0 0 DPY{M(Oxidation (M))|F} 2.9382 - 55 NaN NaN 117991.5 NaN 9938 3089 13022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13031 59.369 NaN 2703200 35 0 303550 0.327 + 27088 SYMGHFDLL 9 114 549.7498633743731 1097.4851738155462 2 549.75 MULTI HCD FTMS 0 0 0 13030 1991814.375 0.21677413240909874 10 -0.2595367431640625 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 149.9946105101851 8.83195450578534E-06 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 94.963 0 0 8.6527 8.6527 93.815 0 0 0 32.98332479720628 9.688105454342804 9.688105454342804 9.688105454342804 0 2.5356668758921828 2 1.7544321917401078 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}EV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]YS{I|L} 8.6527;7.77;5.5686;3.1607;3.1607;2.9887;2.9216;2.8556;2.4308;2.418 +;-;+;-;-;-;-;-;-;- + 3141 + NaN NaN 481667.2 NaN 9939 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13032 59.373 NaN 1454500 35 0 439420 0.261 + 32016 VYPLMKEYF 9 72 603.2992016658338 1204.5838503984676 2 603.2996215820312 MULTI HCD FTMS 0 0 0 13030 843453 0.2101099140350968 28 -0.7272262573242188 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 69.10491478415734 0.009377850133389008 2 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 81.661 0 0 6.7792 6.7792 87.938 0 0 0 18.010299956639813 16.53212513775344 16.53212513775344 6.5321251377534395 0 1.8494850021680094 2 0.7302046884880937 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F} 6.7792;6.2369;5.3465;5.284 -;+;-;- + 321 NaN NaN 308972 NaN 9940 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13033 59.377 NaN 851590 35 0 178020 0.262 + 19363 NPDPAVYQL 9 71 508.75588521398674 1015.4972174947735 2 508.7559814453125 MULTI HCD FTMS 0 0 0 13030 426023.75 1 0 0 3 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 55.50274090549119 0.023872834264864425 2 {[QN]|[E{I|L}]|[KN]}[HD]VYQ{I|L} 8 3 + 52.198 0 0 5.1401 5.1401 87.908 0 0 0 9.507046801327732 23.380456295278407 9.507046801327732 9.262137858390815 0 1.8494850021680094 0 0 1.1307196863200843 {[QN]|[E{I|L}]|[KN]}[HD]VYQ{I|L};{[QN]|[E{I|L}]|[KN]}[HD]VY[AG]{I|L};[VP][EP][NG]YQ{I|L};{[QN]|[E{I|L}]|[KN]}Y{NN|[MP]|[D{I|L}]|[EV]}[HN]{I|L};{[QN]|[E{I|L}]|[KN]}Y{NN|[MP]|[D{I|L}]|[EV]}[H{I|L}]N 5.1401;4.228;3.1384;1.1214;0.82493 -;-;-;-;- 794 NaN NaN 215407.5 NaN 9941 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13034 59.38 NaN 321300 35 0 30800 0.261 + 9839 HYQDVSCLQF 10 57 620.2767498491384 1238.5389467650766 2 620.2763671875 MULTI HCD FTMS 0 0 0 13030 106744.6875 0.5065426741920271 4 -0.11962509155273438 4 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 27.088373467376528 0.2577365110389662 2 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 9 5 74.174 0 0 5.9888 0 0 241.14247328925939 0 241.14247328925939 0 62.79885926180398 0 0 0 1.8494850021680094 0 0.805462187404089 0 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 5.9888 - 407 NaN NaN 134263.1 NaN 9942 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13035 59.384 NaN 269300 35 0 22292 0.262 -1 IPDEQIVVM 9 64 530.2729557672837 1058.5313586013674 2 530.2728881835938 MULTI HCD FTMS 0 0 0 13030 37659.9609375 0.24256115108782486 16 -0.40280914306640625 5 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-2|LGMN;nc|ENSG00000100600|Q99538-3|LGMN 13.90604991867851 0.24021115267848145 2 VV{M(Oxidation (M))|F} 3 -1 41.198 0 0 3.892 0 0 695.3502195406237 0 695.3502195406237 0 36.59379381312206 0 0 0 1.5 0 0 0 VV{M(Oxidation (M))|F} 3.892 + + 64 + NaN NaN 131815.4 NaN 9943 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13036 59.387 NaN 167950 35 0 9522.5 0.261 + 19867 NYAWVYYHM 9 58 631.7687083198309 1261.5228637064617 2 631.7682495117188 MULTI HCD FTMS 0 0 0 13030 64459.25 0.19856935828289107 28 -0.7272262573242188 6 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 63.562846038646086 0.012597299157545023 2 [YN]AWYVY{[{M(Oxidation (M))|F}H]|[RQ]} 9 2 + 69.332 0 0 5.4959 5.4959 85.049 0 0 0 4.744237387763093 4.744237387763093 4.744237387763093 4.744237387763093 0 2 1.6989700043360187 0 0 [YN]AWYVY{[{M(Oxidation (M))|F}H]|[RQ]};[YN]WTYWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[MG]|[TS]}VYADA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]ADAY{[ES]|[DT]|[{I|L}C]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWY[WE][KC];[MT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[HT]WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.4959;5.1198;4.5506;3.7579;2.9216;1.3384 -;-;-;-;-;- 187 + NaN NaN 125855.4 NaN 9944 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13037 59.39 NaN 360730 35 0 51962 0.263 + 20968 PLGVDRELL 9 74 506.2950584226026 1010.5755639120052 2 506.2951965332031 MULTI HCD FTMS 0 0 0 13030 55998.50390625 0.616221987178148 -1 0.02614593505859375 7 Unmodified _PLGVDRELL_ ENSG00000126522|ENST00000304874|ASL;nc|ENSG00000126522|P04424-2|ASL;nc|ENSG00000126522|P04424-3|ASL 10.823927491677226 0.26684000660059787 2 {I|L}{I|L} 2 7 25.217 0 0 2.4953 0 0 766.3977215400972 0 766.3977215400972 0 10.612431371158735 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.4953 + + 99 NaN NaN 142263.7 NaN 9945 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13038 59.398 NaN 58544 35 0 4674.7 0.262 + 21651 PYRLIFEKF 9 40 404.8973947492548 1211.6703548479643 3 404.8973388671875 MULTI HCD FTMS 0 0 0 13030 12717.544921875 0.02064814726964023 38 -1.00311279296875 8 Unmodified _PYRLIFEKF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 5.40270961882225 0.3100604913328303 2 {M(Oxidation (M))|F} 1 8 19.732 0 0 1.6285 0 0 1046.5916938145642 0 1046.5916938145642 0 3.2783248807594845 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.6285 + + 6 + NaN NaN 103680.4 NaN 9946 3090 13030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13040 59.403 NaN 892870 35 0 105470 0.327 + 29336 TYPAELNNI 9 73 517.7612709876087 1033.5079890420172 2 517.7612915039062 MULTI HCD FTMS 0 0 0 13039 408627.9375 0.808730440874907 -3 0.08346176147460938 1 Unmodified _TYPAELNNI_ ENSG00000106546|ENST00000242057|AHR 122.17920374332846 0.0010792739174387011 2 [YT][PA]E{I|L}NN{I|L} 9 0 + 88.254 0 0 8.5393 8.5393 92.817 0 0 0 9.486089061751187 9.486089061751187 9.486089061751187 9.208187539523749 0 2.305462187404089 1.6989700043360187 1.1549471895720984 0.3807196863200844 + + [YT][PA]E{I|L}NN{I|L};[YT][PA]E{I|L}GGN{I|L};[YT][PA]E{I|L}NGG{I|L} 8.5393;7.6483;7.6483 +;-;- + 385 NaN NaN 232540 NaN 9947 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13041 59.408 NaN 415900 35 0 26386 0.261 -1 APFKFDMEL 9 75 557.2678650960022 1112.5211772588043 2 557.2679443359375 MULTI HCD FTMS 0 0 0 13039 179965.703125 0.29461750439247913 5 -0.13745880126953125 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 38.61474834105838 0.07170385841135779 2 AP{M(Oxidation (M))|F}K 4 -1 36.23 0 0 3.2566 0 0 0 666.2457369440061 666.2457369440061 16.82712522130664 0 0 0 0 0.8807196863200843 0 0 0 AP{M(Oxidation (M))|F}K 3.2566 + + 194 + NaN NaN 164863.1 NaN 9948 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13042 59.411 NaN 410240 35 0 44035 0.261 + 4686 EYPDRIMNTF 10 61 643.297686036255 1284.5808191393098 2 643.2977294921875 MULTI HCD FTMS 0 0 0 13039 95314.640625 0.03552189860726539 26 -0.6665611267089844 3 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 71.70789743142352 0.01556163018108538 2 MNT{M(Oxidation (M))|F} 4 6 37.141 0 0 2.8913 0 0 773.3698597638687 0 773.3698597638687 0 23.953650195120844 0 0 0 1.25 0 0.5 0 + MNT{M(Oxidation (M))|F} 2.8913 + + 58 NaN NaN 155612.7 NaN 9949 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13043 59.415 NaN 360060 35 0 38351 0.264 -1 0 60 497.2351837944791 496.2279073278791 1 497.2352600097656 MULTI HCD FTMS 0 0 0 13039 143707.234375 0.09783233279223044 19 -0.4799461364746094 4 NaN NaN 2 EG{M(Oxidation (M))|F} 3 -1 23.812 0 0 4.7987 0 0 145.0857697319791 0 145.0857697319791 0 19.83288122256525 0 0 0 0 0 0 0 EG{M(Oxidation (M))|F} 4.7987 - 19 + NaN NaN 140776.3 NaN 9950 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13044 59.418 NaN 969540 35 0 195930 0.261 + 8786 HIIDDALVRL 10 93 582.8400429906546 1163.6655330481092 2 582.8391723632812 MULTI HCD FTMS 0 0 0 13039 341964.46875 0.6720345971647805 -3 0.08346176147460938 5 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 84.5221896805406 0.0014228510802933125 2 {I|L}H{I|L}DDA{I|L}VR{I|L} 10 2 + 92.546 0 0 7.953 7.953 87.735 0 0 0 3.2390874094431865 4.418402966525576 3.2390874094431865 0.796896906561031 0 3.353917193908117 1.6989700043360187 1.1237125054200234 0.49164406112826264 {I|L}H{I|L}DDA{I|L}VR{I|L};{I|L}H{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}DD{I|L}AVR{I|L};[H{I|L}]{I|L}DDA{I|L}VR{I|L};{I|L}H{I|L}D[TP]TVR{I|L};H{I|L}{I|L}D[TP]TVR{I|L};[QP][RP]DA{I|L}V[VG]{I|L} 7.953;7.8845;7.6746;7.6061;7.5733;7.0788;6.8004;3.1458 -;-;+;-;+;-;-;- + 648 + NaN NaN 240366.8 NaN 9951 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13045 59.421 NaN 433310 35 0 54478 0.261 + 24601 RYLPQCSYF 9 80 588.7792897768071 1175.5440266204141 2 588.779052734375 MULTI HCD FTMS 0 0 0 13039 144634.03125 0.7872148841677465 -3 0.08346176147460938 6 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 51.629811660486645 0.02929079705179888 2 [YR]{I|L}[QP]CSY{M(Oxidation (M))|F} 9 0 + 59.944 0 0 5.0993 5.0993 90.911 0 0 0 3.0449934725749017 45.339862491657854 3.0449934725749017 32.32902204431446 0 2.305462187404089 0 0.8807196863200843 0 + + [YR]{I|L}[QP]CSY{M(Oxidation (M))|F};[YR]{I|L}[TP]{[C(Carbamidomethyl (C))G]|[NC]}Y{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[R{M(Oxidation (M))|F}]SY{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[WT]|[RM]}E{[QV]|[N{I|L}]|[RA]|[KV]}Y{M(Oxidation (M))|F};[YR][WD]{[QV]|[N{I|L}]|[RA]|[KV]}Y{M(Oxidation (M))|F} 5.0993;2.3491;1.792;1.6677;1.3727 +;-;-;-;- + 304 NaN NaN 156009.8 NaN 9952 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13046 59.425 NaN 408720 35 0 22397 0.261 + 35035 YTIEQRYL 8 88 543.2850641565343 1084.5555753798685 2 542.769287109375 MULTI HCD FTMS 0 0 0 13039 23350.2421875 0.33712539066571195 14 -0.33219146728515625 7 Unmodified _YTIEQRYL_ tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1 18.1463463914782 0.46027927471454505 2 QEATN{I|L}P{M(Oxidation (M))|F} 8 8 57.887 0 0 5.3374 0 0 166.11018500423592 0 166.11018500423592 0 26.723352682938067 0 0 0 0.3494850021680094 0 0.7059771852360797 0.4247425010840047 QEATN{I|L}P{M(Oxidation (M))|F} 5.3374 - 2031 + NaN NaN 145195.8 NaN 9953 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13047 59.428 NaN 333690 35 0 24100 0.261 + 1399 AYQHAFLYIRQ 11 81 470.58248635857876 1408.7256296759363 3 470.582275390625 MULTI HCD FTMS 0 0 0 13039 127134.859375 0.9946010163554929 -4 0.10628509521484375 8 Unmodified _AYQHAFLYIRQ_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENST00000477976.5_1_1:880076-889593:-|nuORF 7.477065608646677 0.3861287967437539 2 AY 2 9 41.454 0 0 2.9426 0 0 0 1171.6045082934381 1171.6045082934381 23.354706403678875 0 0 0 0 0.3494850021680094 2 0 0 + AY 2.9426 + + 42 + NaN NaN 142103.8 NaN 9954 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13048 59.431 NaN 399340 35 0 104990 0.261 -1 FPAGYMYPSM 10 58 598.2437384201628 1194.4729239071255 2 598.7454833984375 MULTI HCD FTMS 0 0 0 13039 22469.55078125 0.1149661437572411 -58 1.5409660339355469 9 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 34.10243960390752 0.1965851268881605 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 43.711 0 0 3.6595 0 0 535.2438221662125 0 535.2438221662125 0 34.24742501084005 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.6595 + + 38 NaN NaN 147538 NaN 9955 3091 13039 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13050 59.436 NaN 2007800 35 0 266080 0.327 + 5931 FPDPAGKLNQF 11 116 617.316973191258 1232.6193934493158 2 617.3167724609375 MULTI HCD FTMS 0 0 0 13049 1263327.875 0.6797179122607271 2 -0.0523223876953125 1 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 158.07680821502697 3.091957642173044E-06 2 {M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F} 11 0 + 95.047 0 0 7.7109 7.7109 90.68 0 0 0 67.90964200659667 5.109860684774318 5.109860684774318 9.128498242810991 0 3.028659694992122 0 0.5994850021680094 2.2346368802282015 + + {M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPAGK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPQK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPA[KA]VNQ{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}PAGK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPQK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}N[AG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPQK{I|L}GGQ{M(Oxidation (M))|F} 7.7109;6.9704;6.7326;6.5494;6.4786;6.3269;6.0377;5.992;5.992;5.8059 +;-;+;-;-;-;-;-;-;- + 6288 + NaN NaN 399161.5 NaN 9956 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13051 59.441 NaN 1090300 35 0 274270 0.263 + 27416 SYTSGLETL 9 71 485.74014803698117 969.4657431407624 2 485.739990234375 MULTI HCD FTMS 0 0 0 13049 653811.9375 0.7994528011784927 2 -0.0523223876953125 2 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 141.82661023413823 1.746659319327287E-05 2 {[{M(Oxidation (M))|F}C]|[YS]}TS{[VA]|[{I|L}G]}ET{I|L} 9 0 + 68.936 0 0 7.1107 7.1107 94.117 0 0 0 4.762036441594191 44.89909385331507 4.762036441594191 29.47688632701999 0 2.2302046884880937 0 1.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}TS{[VA]|[{I|L}G]}ET{I|L};[{I|L}T][YG]{[CA]|SS}ET{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}A]{[CA]|SS}ET{I|L};{[{M(Oxidation (M))|F}C]|[YS]}T[{I|L}A]{[DS]|[MA]|[CV]|TT}T{I|L};[{I|L}T]E{[VA]|[{I|L}G]}ST{[{M(Oxidation (M))|F}C]|[YS]};{[ET]|[MV]}{I|L}{[VA]|[{I|L}G]}ST{[{M(Oxidation (M))|F}C]|[YS]};[{I|L}T]T[TP]ST{[{M(Oxidation (M))|F}C]|[YS]} 7.1107;4.0702;3.7913;1.6815;1.2414;0.37321;0.25985 +;-;-;-;-;-;- + 372 NaN NaN 252143.3 NaN 9957 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13052 59.444 NaN 6381800 35 0 1107800 0.261 + 5276 FFFFLFSFLFF 11 103 503.59306843662836 1507.757375910085 3 503.59307861328125 MULTI HCD FTMS 0 0 0 13049 1720430 0.19161151787444564 -4 0.11632919311523438 3 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 28.233623360808718 0.2127292296419295 2 E{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 -1 85.91 0 0 5.6978 0 0 54.03358760406406 0 54.03358760406406 0 74.94064848762636 0 0 0 2.8494850021680094 0 0.7614393726401688 0.3494850021680094 E{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6978 - 1205 + NaN NaN 1057903.9 NaN 9958 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13053 59.448 NaN 1326500 35 0 220210 0.261 + 31763 VYLPNINKI 9 86 537.3213092197245 1072.628065506249 2 537.3213500976562 MULTI HCD FTMS 0 0 0 13049 511740.375 0.999854317460205 -1 0.032867431640625 4 Unmodified _VYLPNINKI_ ENSG00000072422|ENST00000337910|RHOBTB1 112.59319219568356 0.00251905749371435 2 VY{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}NK{I|L} 9 0 + 63.881 0 0 5.9555 5.9555 86.434 0 0 0 37.613746581780816 9.71945309334724 9.71945309334724 6.294934551318079 0 2.2302046884880937 1.6989700043360187 0 0.9517188504113845 + + VY{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}NK{I|L};VY{I|L}[{I|L}T][HS]K{I|L};VY{I|L}P{[QV]|[N{I|L}]|[RA]|[KV]}GGK{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}[YV]{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}Q[VP][YV]{I|L} 5.9555;5.3687;5.0971;1.8252;1.1896 +;-;-;-;- + 225 + NaN NaN 289737.9 NaN 9959 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13054 59.451 NaN 380360 35 0 47362 0.261 + 10559 IPILYEHQL 9 65 563.3187796739405 1124.623006414681 2 563.3186645507812 MULTI HCD FTMS 0 0 0 13049 177771.421875 0.20680003297932184 7 -0.18273544311523438 5 Unmodified _IPILYEHQL_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 126.56589448801843 0.0008132384440316759 2 {I|L}P{I|L}{I|L}YEH[Q{I|L}] 9 0 + 117.18 0 0 10.42 10.42 99.106 0 0 0 110.19106754338287 22.61870520051602 22.61870520051602 54.59203555710088 0 2.56295299324845 1.6989700043360187 0.6861818737241735 1.7856668758921828 + + {I|L}P{I|L}{I|L}YEH[Q{I|L}];{I|L}PWE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[Q{I|L}];{I|L}P{I|L}[WE]{[QV]|[N{I|L}]|[RA]|[KV]}[Q{I|L}];{I|L}E[WP]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[Q{I|L}] 10.42;5.5653;5.5234;1.8112 +;-;-;- + 363 + NaN NaN 147488.3 NaN 9960 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13055 59.454 NaN 529730 35 0 25759 0.261 + -1 CLMPALRSW 9 106 567.2849803172553 1132.5554077013105 2 567.8060913085938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))LMPALRSW_ REV__ENST00000313732.8_1_16:85009430-85009634:-|nuORF 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}E[QP]{I|L}QVSW 9 -1 + 55.856 0 0 4.9319 4.9319 88.496 0 0 0 21.419497169889326 14.973024840566467 14.973024840566467 12.742727328383694 0 2.1677353201839438 0 0.2742275032520141 0.7614393726401688 {M(Oxidation (M))|F}E[QP]{I|L}QVSW;V{[ES]|[DT]|[{I|L}C]}W{I|L}QVSW;{M(Oxidation (M))|F}A[RK][HC]VSW;{[CT]|[{M(Oxidation (M))|F}G]}SVQ{I|L}[QP]G[NS];{M(Oxidation (M))|F}E[QP]{I|L}QQP{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[HK][{I|L}V]TEE;{M(Oxidation (M))|F}M[YR][W{I|L}]A{M(Oxidation (M))|F};{M(Oxidation (M))|F}GSV[YT]{[QN]|[E{I|L}]|[KN]}A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[HK][{I|L}V]VME;{[DS]|[MA]|[CV]|TT}{I|L}[W{I|L}]WQGE 4.9319;3.8068;2.9705;2.813;2.8088;2.713;2.3994;1.9642;1.8463;1.8421 -;-;-;-;-;-;-;-;-;- 1141 + NaN NaN 172873.3 NaN 9961 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13056 59.458 NaN 409170 35 0 63639 0.263 + 32774 WRRAWFRQW 9 64 464.5794160478252 1390.7164187436756 3 464.578857421875 MULTI HCD FTMS 0 0 0 13049 89587.7109375 0.8888554981488034 -2 0.06730270385742188 7 Unmodified _WRRAWFRQW_ REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF 8.155526934196011 0.2891920862272901 2 AY 2 -1 31.88 0 0 2.2923 0 0 0 1153.5900173119958 1153.5900173119958 7.17371328289893 0 0 0 0 0.3252574989159953 1.154901959985743 0 0 AY 2.2923 - 46 + NaN NaN 152350.2 NaN 9962 3092 13049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13058 59.462 NaN 614440 35 0 63764 0.327 + 18858 NAELWQVSW 9 89 566.7753210247591 1131.5360891163182 2 566.7750244140625 MULTI HCD FTMS 0 0 0 13057 122469.078125 0.4331948749392186 38 -1.0049514770507812 1 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 29.081581746732265 0.1154664336125038 2 SVSYTVSW 8 6 54.211 0 0 4.7909 0 0 204.09119924794328 0 204.09119924794328 0 36.252130195812796 0 0 0 0.5 0 0.6382104921644451 0 SVSYTVSW 4.7909 - 627 + NaN NaN 181226.7 NaN 9963 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13059 59.467 NaN 280600 35 0 40116 0.261 + 33860 YLLHQYISD 9 64 576.2898646116661 1150.565176290132 2 576.7738647460938 MULTI HCD FTMS 0 0 0 13057 9349.564453125 0.15435916968491295 7 -0.16602325439453125 2 Unmodified _YLLHQYISD_ REV__ENSG00000157927|ENST00000399583|RADIL;REV__ENST00000472999.5_1_7:4839011-4843599:-|nuORF;REV__nc|ENSG00000157927|Q96JH8-1|RADIL;REV__nc|ENSG00000157927|Q96JH8-2|RADIL;REV__nc|ENSG00000157927|Q96JH8-3|RADIL 7.289230182591677 0.29575926068275815 2 V{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}TVGP 8 -1 22.204 0 0 1.9298 0 0 0 297.1229647272094 297.1229647272094 1.2350316344870294 0 0 0 0 0 0 0 0 V{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}TVGP 1.9298 - 82 + NaN NaN 133363.6 NaN 9964 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13060 59.47 NaN 400490 35 0 43882 0.261 -1 DHNASMDFA 9 71 512.1955897554491 1022.3766265776982 2 512.1961669921875 MULTI HCD FTMS 0 0 0 13057 60221.80859375 0.42376948440736145 4 -0.10107803344726562 3 Oxidation (M) _DHNASM(Oxidation (M))DFA_ ENSG00000108523|ENST00000262482|RNF167 1.844237919475145 0.33703635659052655 2 {I|L}[{I|L}T] 3 -1 14.621 0 0 1.4301 0 0 677.1522135911731 0 677.1522135911731 0 6.549471895720984 0 0 0 0.3494850021680094 0 0.3054621874040891 0 {I|L}[{I|L}T] 1.4301 - 70 + NaN NaN 147258.2 NaN 9965 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13061 59.474 NaN 154370 35 0 26993 0.261 + 12703 KWPDRITLL 9 52 571.3399750339152 1140.6653971346302 2 571.3402099609375 MULTI HCD FTMS 0 0 0 13057 50113.65625 0.23493824369694838 9 -0.21126556396484375 4 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 8.745405648335112 0.2847203663274469 2 KW 2 7 24.776 0 0 2.1721 0 0 0 823.467756609046 823.467756609046 17.78659694992122 0 0 0 0 0.3807196863200844 0 0 0 + KW 2.1721 + + 11 + NaN NaN 105087.8 NaN 9966 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13062 59.477 NaN 207150 35 0 12955 0.261 + 8927 HPDLLIKVL 9 64 524.3316519591403 1046.6487509850806 2 524.3314208984375 MULTI HCD FTMS 0 0 0 13057 66307.8515625 0.4220610694766792 10 -0.2340240478515625 5 Unmodified _HPDLLIKVL_ ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4 39.94969957227396 0.06557568441294001 2 KV{I|L} 3 6 30.93 0 0 2.9551 0 0 688.3869942031047 0 688.3869942031047 0 9.47621246364342 0 0 0 0.7742275032520141 0 0 0 + KV{I|L} 2.9551 + + 22 NaN NaN 117818.6 NaN 9967 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13063 59.48 NaN 383900 35 0 165230 0.261 -1 FPAGYMYPSM 10 59 598.2437384201628 1194.4729239071255 2 598.2442626953125 MULTI HCD FTMS 0 0 0 13057 49804.12109375 0.1707340716556685 -46 1.2292823791503906 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 39.957323273324995 0.14577711486213385 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 -1 45.701 0 0 3.826 0 0 535.2421742169937 0 535.2421742169937 0 38.7113751626007 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.826 + + 77 NaN NaN 144924.6 NaN 9968 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13064 59.484 NaN 206990 35 0 9317.1 0.261 + 31475 VYEKNGYIYF 10 48 648.318750668645 1294.6229484040898 2 648.3206787109375 MULTI HCD FTMS 0 0 0 13057 18900.751953125 0.158349580886437 9 -0.21126556396484375 7 Unmodified _VYEKNGYIYF_ chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13 8.155526934196011 0.43213520406898465 2 {I|L}[Y{M(Oxidation (M))|F}] 3 7 15.458 0 0 1.194 0 0 853.3939686505875 0 853.3939686505875 0 11.760912590556817 0 0 0 0.5 0 0 0 + {I|L}[Y{M(Oxidation (M))|F}] 1.194 + + 6 NaN NaN 122961.5 NaN 9969 3093 13057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13066 59.489 NaN 827720 35 0 78915 0.327 + 32245 VYTTTVHWL 9 91 560.2952627154932 1118.5759724977863 2 560.2957153320312 MULTI HCD FTMS 0 0 0 13065 350735.46875 0.317889136612002 7 -0.16571426391601562 1 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 139.54400939418784 2.61670173137287E-05 2 VYTTTVHW{I|L} 9 0 + 85.728 0 0 7.664 7.664 92.786 0 0 0 67.0646521992238 8.142492736872597 8.142492736872597 11.550244867691433 0 2.1861818737241734 1.6989700043360187 0.8494850021680094 0 + + VYTTTVHW{I|L};[YV]TTTVHW{I|L};VYTTTHVW{I|L};[YV]TT[YR]{[MS]|[{M(Oxidation (M))|F}A]}V;VYT{[NV]|[RG]}[QP]W{I|L};[YV][PS]VTH{[MS]|[{M(Oxidation (M))|F}A]}V;[YT]VTTVHW{I|L};[YV][YK]{[RE]|[WV]}YV;[YV][PS]VQQW{I|L};[YT]VT[YR]{[MS]|[{M(Oxidation (M))|F}A]}V 7.664;6.6315;6.5682;4.7139;4.7124;3.9796;3.9101;3.6028;3.296;1.9926 +;+;-;-;-;-;-;-;-;- + 2911 + NaN NaN 212690.4 NaN 9970 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13067 59.493 NaN 136580 35 0 36562 0.262 + 16532 LTNGFDVF 8 53 456.72682333473 911.43909373626 2 456.7269592285156 MULTI HCD FTMS 0 0 0 13065 36088.4609375 0.3007488637416441 2 -0.05226898193359375 2 Unmodified _LTNGFDVF_ ENSG00000106789|ENST00000375077|CORO2A 15.847184025352803 0.47719562709667024 2 V{M(Oxidation (M))|F} 2 6 30.969 0 0 3.3978 0 0 647.2914019411413 0 647.2914019411413 0 29.3753063169585 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 3.3978 + + 12 + NaN NaN 108192.9 NaN 9971 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13068 59.497 NaN 791950 35 0 355330 0.261 -1 LRWHLQALC 9 60 598.8242310155285 NaN 0 598.8121948242188 PEAK HCD FTMS 0 0 0 13065 14181.8115234375 0.7863257318069203 1 -0.026165008544921875 3 Carbamidomethyl (C) _LRWHLQALC(Carbamidomethyl (C))_ ENST00000444387.6_3_1:21049348-21050142:-|nuORF 7.289230182591677 0.2599242500475609 2 SP[VS]{M(Oxidation (M))|F}YP 7 -1 15.194 0 0 1.2708 0 0 166.2113734323869 249.05523096256096 415.2666043949479 0 0 0 0 0 0 0 0 0 SP[VS]{M(Oxidation (M))|F}YP 1.2708 - 86 + NaN NaN 223954.2 NaN 9972 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13069 59.5 NaN 258130 35 0 21515 0.261 + 5520 FLDGNEMTL 9 62 528.2394461257605 1054.464339318321 2 528.2395629882812 MULTI HCD FTMS 0 0 0 13065 32470.478515625 0.20014094112856531 -2 0.0523223876953125 4 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 60.07390631473393 0.0174780869009295 2 [YT]P{[QG]|[NA]}E{M(Oxidation (M))|F}T{I|L} 9 4 + 57.162 0 0 5.421 5.421 89.929 0 0 0 16.020599913279625 14.973024840566467 14.973024840566467 16.020599913279625 0 1.0484550065040281 2 0.3494850021680094 0.6861818737241735 [YT]P{[QG]|[NA]}E{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DE[NG]{M(Oxidation (M))|F}T{I|L} 5.421;3.9017;3.2158 -;+;- + 286 NaN NaN 134093.8 NaN 9973 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13070 59.503 NaN 179240 35 0 12255 0.261 + 35863 YYQNYFEKL 9 48 634.3035096882438 1266.5924664432875 2 634.3032836914062 MULTI HCD FTMS 0 0 0 13065 46926.23828125 0.02245042132599789 43 -1.1486663818359375 5 Unmodified _YYQNYFEKL_ ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1 43.77239144664712 0.04802738721622131 2 YYQ[YN]{M(Oxidation (M))|F}E[K{I|L}] 9 0 + 53.178 0 0 4.1985 4.1985 85.825 0 0 0 9.978109286651247 39.46658406217743 9.978109286651247 9.208187539523749 0 1.9247425010840047 2 0 0.3807196863200844 + + YYQ[YN]{M(Oxidation (M))|F}E[K{I|L}];YY[AG][YN]{M(Oxidation (M))|F}E[K{I|L}] 4.1985;3.4715 +;- + 31 NaN NaN 126525.2 NaN 9974 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13071 59.506 NaN 146790 35 0 7757.7 0.261 -1 MPMQDIKMIL 10 48 626.3110422339213 1250.6075315346425 2 626.31103515625 MULTI HCD FTMS 0 0 0 13065 49382.87890625 0.5111580451485943 7 -0.16571426391601562 6 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 10.150570793230772 0.4161670024087991 2 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 30.477 0 0 2.437 0 0 731.2976132620555 0 731.2976132620555 0 29.764034681398638 0 0 0 0.3054621874040891 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 2.437 + + 7 NaN NaN 107089.2 NaN 9975 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13072 59.51 NaN 144290 35 0 25578 0.264 + 4026 ERTSSSTI 8 50 440.72126228054947 NaN 0 440.7211608886719 PEAK HCD FTMS 0 0 0 13065 44996.95703125 0.024434490383563275 48 -1.2826652526855469 7 Unmodified _ERTSSSTI_ REV__ENSG00000116962|ENST00000264187|NID1;REV__nc|ENSG00000116962|P14543-2|NID1 16.942295170755138 0.3865212393897457 2 V 1 -1 9.732 0 0 1.1066 0 0 186.07782621949895 591.2574385660943 777.3352647855932 0 0 0 0 0 0.4247425010840047 0 0 0 V 1.1066 - 22 + NaN NaN 117410.4 NaN 9976 3094 13065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13074 59.515 NaN 1794700 35 0 204780 0.327 + 27089 SYMGHFDLL 9 101 549.7498633743731 1097.4851738155462 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13073 1081321.5 0.11768291913135995 15 -0.36859130859375 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 103.74828524460852 0.00396301343438984 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 62.731 0 0 5.7158 5.7158 91.118 0 0 0 7.816658315635081 15.72051538364164 7.816658315635081 21.390756251918212 0 2.3979400086720375 0 1.066901560044258 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}YS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{I|L}{M(Oxidation (M))|F}YS;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{I|L}{M(Oxidation (M))|F}SY;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}S{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]YS{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}{I|L}YS 5.7158;3.7668;3.1961;3.1644;3.0688;2.8492;2.741;2.6748;2.5937;2.5749 +;-;-;-;-;-;-;-;-;- + 1914 NaN NaN 368905.9 NaN 9977 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13075 59.519 NaN 1168000 35 0 338350 0.261 + 32017 VYPLMKEYF 9 68 603.2992016658338 1204.5838503984676 2 603.2994995117188 MULTI HCD FTMS 0 0 0 13073 587450.0625 0.14633783047992863 33 -0.8573226928710938 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 79.59630418116434 0.005983006570063981 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 84.179 0 0 6.9882 6.9882 86.631 0 0 0 16.778259348524358 63.605925060534574 16.778259348524358 2.2184874961635614 0 2.305462187404089 2 0.7302046884880937 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P][YV]{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YE]VY{M(Oxidation (M))|F} 6.9882;6.8041;5.5588;5.4963;5.2618;5.1993;3.6437;3.4595;3.2911;2.2153 +;-;-;-;-;-;-;-;-;- + 598 NaN NaN 262874.5 NaN 9978 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13076 59.523 NaN 608330 35 0 65762 0.262 + 19364 NPDPAVYQL 9 69 508.75588521398674 1015.4972174947735 2 508.755615234375 MULTI HCD FTMS 0 0 0 13073 165007.84375 0.3873207626335386 5 -0.11374664306640625 3 Unmodified _NPDPAVYQL_ nc|ENSG00000277734|P01848|TRAC 34.40172386719151 0.0910440009062557 2 YQ{I|L} 3 6 35.445 0 0 3.4904 0 0 593.2805892037511 0 593.2805892037511 0 11.63303128443836 0 0 0 0.9247425010840047 0 0 0 + YQ{I|L} 3.4904 + + 306 NaN NaN 180112.8 NaN 9979 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13077 59.526 NaN 272830 35 0 20280 0.261 + 24566 RYLNEFEEL 9 71 606.7980308009771 1211.5815086687542 2 606.7989501953125 MULTI HCD FTMS 0 0 0 13073 62316.15625 0.03208342836593016 29 -0.7320098876953125 4 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 29.84058131909904 0.11198220037953927 2 NE{M(Oxidation (M))|F}EE{I|L} 6 3 49.099 0 0 4.0525 0 0 432.2487965314469 0 432.2487965314469 0 36.24607959228964 0 0 0 0.7302046884880937 0 0.3807196863200844 0.4247425010840047 + NE{M(Oxidation (M))|F}EE{I|L} 4.0525 + + 799 NaN NaN 128078.1 NaN 9980 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13078 59.529 NaN 389510 35 0 24807 0.261 + 33526 YIFRPGTVL 9 76 533.308810123301 1064.6030673134019 2 533.3095092773438 MULTI HCD FTMS 0 0 0 13073 93298.2421875 0.1988042057310707 -21 0.5332679748535156 5 Unmodified _YIFRPGTVL_ ENSG00000218819|ENST00000405799|TDRD15 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}[KT]V{I|L} 5 5 30.758 0 0 2.8891 0 0 458.21862639523204 0 458.21862639523204 0 9.78855930516417 0 0 0 0.5 0 0.8494850021680094 0.805462187404089 {M(Oxidation (M))|F}[KT]V{I|L} 2.8891 - 252 NaN NaN 147251.4 NaN 9981 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13079 59.533 NaN 954440 35 0 93190 0.261 + 4752 EYTAKIALL 9 77 511.29993413349575 1020.5853153337915 2 511.30035400390625 MULTI HCD FTMS 0 0 0 13073 206268.671875 0.2644107646780157 -5 0.14579010009765625 6 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 58.678817012210395 0.019429721296335044 2 [YE]TAK{I|L}A{I|L}{I|L} 9 0 + 60.569 0 0 5.9347 5.9347 92.522 0 0 0 1.674902666171434 10.642492736872597 1.674902666171434 36.5815315012393 0 1.1237125054200234 1.5228787452803376 0 0 + + [YE]TAK{I|L}A{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[DV]K{I|L}A{I|L}{I|L} 5.9347;2.3503 +;- + 212 + NaN NaN 232806.6 NaN 9982 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13080 59.536 NaN 364110 35 0 81846 0.262 -1 0 62 407.2870917246095 812.5596305160191 2 407.286865234375 MULTI HCD FTMS 0 0 0 13073 60487.828125 0.5789954217701965 -5 0.14579010009765625 7 NaN NaN 2 W 1 -1 15.485 0 0 1.9057 0 0 608.4697390138691 0 608.4697390138691 0 8.494850021680094 0 0 0 0 0 0 0 W 1.9057 - 84 + NaN NaN 143896.7 NaN 9983 3095 13073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13082 59.541 NaN 978890 35 0 221790 0.327 + 8787 HIIDDALVRL 10 96 582.8400429906546 1163.6655330481092 2 582.8401489257812 MULTI HCD FTMS 0 0 0 13081 507522 0.9973911736181327 2 -0.048748016357421875 1 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 93.93812099017352 0.0007001511577108254 2 H{I|L}{I|L}DDA{I|L}VR{I|L} 10 0 + 97.022 0 0 8.3376 8.3376 88.18 0 0 0 71.46566431036183 9.10650842086838 9.10650842086838 0.5237875363565792 0 3.254432191740108 1.6989700043360187 0.6382104921644451 0.5242275032520141 + + H{I|L}{I|L}DDA{I|L}VR{I|L};{I|L}H{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}DD{I|L}AVR{I|L};{I|L}H{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}D[TP]TVR{I|L};{I|L}H{I|L}D[TP]TVR{I|L};[H{I|L}]{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}{I|L}DDAVR{I|L};{I|L}H{I|L}{I|L}DDAVR{I|L};[QP][RP]DA{I|L}V[VG]{I|L} 8.3376;8.2926;8.1618;8.1168;7.7441;7.6991;7.3436;6.6677;6.6227;2.7854 +;-;-;-;-;-;+;-;-;- + 730 + NaN NaN 234877 NaN 9984 3096 13081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13083 59.545 NaN 763150 35 0 83052 0.261 + 29337 TYPAELNNI 9 74 517.7612709876087 1033.5079890420172 2 517.76123046875 MULTI HCD FTMS 0 0 0 13081 258203.421875 0.5110198007652825 2 -0.048748016357421875 2 Unmodified _TYPAELNNI_ ENSG00000106546|ENST00000242057|AHR 99.75527289724121 0.004270341300239591 2 [YT][PA]E{I|L}NN{I|L} 9 0 + 87.017 0 0 8.4196 8.4196 92.66 0 0 0 12.385606273598313 12.385606273598313 12.385606273598313 9.208187539523749 0 2.274227503252014 1.6989700043360187 0.7614393726401688 0.3807196863200844 + + [YT][PA]E{I|L}NN{I|L};[YT][PA]E{I|L}GGN{I|L};[YT][PA]E{I|L}NGG{I|L} 8.4196;7.5286;7.5286 +;-;- + 213 NaN NaN 202352.7 NaN 9985 3096 13081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13084 59.549 NaN 907750 35 0 175460 0.261 + 9791 HYLDTTTLI 9 83 538.7846388257533 1075.5547247183065 2 538.784423828125 MULTI HCD FTMS 0 0 0 13081 320734.4375 0.6017711599021781 -6 0.17189407348632812 3 Unmodified _HYLDTTTLI_ ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK 39.957323273324995 0.06554068735427583 2 TT{I|L}{I|L} 4 5 41.701 0 0 3.8772 0 0 629.277147361525 0 629.277147361525 0 20.53009725027536 0 0 0 0.7302046884880937 0 1.1747425010840047 0 + TT{I|L}{I|L} 3.8772 + + 134 NaN NaN 231873.9 NaN 9986 3096 13081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13085 59.552 NaN 505980 35 0 96774 0.261 -1 FVVEHDFIM 9 73 576.7734074464107 1151.5322619596213 2 577.7864990234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 18.13498045792455 0.20367413111508956 2 {I|L}{M(Oxidation (M))|F} 2 -1 22.717 0 0 1.9727 0 0 873.4035520980964 0 873.4035520980964 0 6.685756335471421 0 0 0 0.3252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9727 + + 63 + NaN NaN 158314.3 NaN 9987 3096 13081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13086 59.555 NaN 805320 35 0 132460 0.262 + 26287 SRIRKNMEYFF 11 63 497.5895928857897 1489.7469492575692 3 497.5899658203125 MULTI HCD FTMS 0 0 0 13081 195438.140625 1 0 0 5 Unmodified _SRIRKNMEYFF_ tr|U7SV52|U7SV52_FUSNUGlucose-1-phosphateadenylyltransferase,GlgDsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01132PE=3SV=1 9.764250979337305 0.37200617284565546 2 AY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 8 39.553 0 0 2.655 0 0 943.4886007241693 0 943.4886007241693 0 20.088643834802156 0 0 0 1 0 0 0 AY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.655 - 62 + NaN NaN 199704.2 NaN 9988 3096 13081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13087 59.559 NaN 183760 35 0 7653.3 0.261 + -1 IYYFINCYL 9 49 634.8052457439262 NaN 0 634.8065185546875 PEAK HCD FTMS 0 0 0 13081 70896.7421875 0.9066105830110002 1 -0.02269744873046875 6 Carbamidomethyl (C) _IYYFINC(Carbamidomethyl (C))YL_ REV__ENST00000538442.5_2_6:31478290-31478698:+|nuORF 4.75600775471527 0.27219989241163056 2 K[{M(Oxidation (M))|F}E]YNQ 6 -1 16.744 0 0 1.3209 0 0 132.1005294743773 323.10272420564144 455.20325368001875 0 0 0 0 0 0.3807196863200844 0 0 0.3807196863200844 K[{M(Oxidation (M))|F}E]YNQ 1.3209 - 28 + NaN NaN 111381.1 NaN 9989 3096 13081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13089 59.563 NaN 1318800 35 0 89483 0.327 + 13175 KYLSVQGQLF 10 95 591.8296046129591 1181.644656292718 2 591.829833984375 MULTI HCD FTMS 0 0 0 13088 847362.4375 0.12383532963447667 -5 0.127288818359375 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 110.5527297667825 5.049829312965123E-05 2 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 96.336 0 0 8.1527 8.1527 91.236 0 0 0 8.750612633917001 16.53212513775344 8.750612633917001 8.750612633917001 0 2.305462187404089 1.3010299956639813 1.416386562212267 1.274227503252014 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GAAV{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}[QA]V{M(Oxidation (M))|F};[Y{I|L}]KS[QA]{[NV]|[RG]}{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GAAV{M(Oxidation (M))|F} 8.1527;7.4122;7.3771;7.2244;6.6366;6.4488;5.7967;5.4949;5.4201;5.0561 -;-;-;+;-;-;-;-;-;- + 2969 NaN NaN 279981.7 NaN 9990 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13090 59.568 NaN 364510 35 0 66284 0.261 + 17447 LYSEVDVHF 9 62 554.7691773812119 1107.5238018292237 2 554.7686157226562 MULTI HCD FTMS 0 0 0 13088 167356.09375 0.4662382640465574 -3 0.0749664306640625 2 Unmodified _LYSEVDVHF_ ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 156.15588289589118 2.3186882095317417E-06 2 {I|L}YSEVDVH{M(Oxidation (M))|F} 9 0 + 118.94 0 0 10.739 10.739 95.554 0 0 0 10.520176554747579 10.520176554747579 10.520176554747579 10.520176554747579 0 3.0356668758921828 1.6989700043360187 0.4247425010840047 0 + + {I|L}YSEVDVH{M(Oxidation (M))|F};[Y{I|L}]SEVDVH{M(Oxidation (M))|F};{I|L}YEE[TA]VH{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YT]VDVH{M(Oxidation (M))|F};{I|L}YEEV[TA]H{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}HHV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}[C(Carbamidomethyl (C))K]V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[NV]|[RG]} 10.739;9.7892;6.2025;5.4398;5.0957;0.64446;0.51252 +;+;-;-;-;-;- + 608 + NaN NaN 144557.4 NaN 9991 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13091 59.571 NaN 387670 35 0 37652 0.261 + 4687 EYPDRIMNTF 10 75 643.297686036255 1284.5808191393098 2 643.29736328125 MULTI HCD FTMS 0 0 0 13088 118127.0078125 0.04402362078669665 32 -0.8447647094726562 3 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 93.93812099017352 0.0007001511577108254 2 [YE][DP][R{I|L}]MNT{M(Oxidation (M))|F} 10 0 + 49.543 0 0 3.8567 3.8567 89.978 0 0 0 19.308641390345116 12.159000435348162 12.159000435348162 49.54251328923327 0 1.9049471895720984 1.6989700043360187 1.079689690656103 0.3252574989159953 + + [YE][DP][R{I|L}]MNT{M(Oxidation (M))|F} 3.8567 + + 98 + NaN NaN 147832.7 NaN 9992 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13092 59.575 NaN 377190 35 0 50563 0.261 + 24602 RYLPQCSYF 9 69 588.7792897768071 1175.5440266204141 2 588.7791748046875 MULTI HCD FTMS 0 0 0 13088 70096.96875 0.381524158997272 3 -0.06494522094726562 4 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 38.175570920033316 0.07371992880350783 2 CSY{M(Oxidation (M))|F} 4 5 45.266 0 0 3.8506 0 0 657.3585870873392 0 657.3585870873392 0 36.313506577119625 0 0 0 1.2302046884880937 0 0.8807196863200843 0 + CSY{M(Oxidation (M))|F} 3.8506 + + 103 NaN NaN 147631 NaN 9993 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13093 59.578 NaN 342360 35 0 17184 0.261 + 27464 SYVVAMETF 9 80 531.7440484851179 1061.4735440370357 2 531.743896484375 MULTI HCD FTMS 0 0 0 13088 132766.078125 1 0 0 5 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 65.23502041540118 0.010630085227462206 2 {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 9 0 + 50.494 0 0 4.757 4.757 89.913 0 0 0 2.9594766084408093 37.306457467589134 2.9594766084408093 25.428418131619985 0 2.242992819099939 0 0.2614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[Y{I|L}][TA]A{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};[YT][{I|L}A]A{M(Oxidation (M))|F}ET{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[YE]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KE 4.757;2.3614;2.1409;0.34341 +;-;-;- + 418 NaN NaN 152473.6 NaN 9994 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13094 59.581 NaN 250550 35 0 39741 0.262 + 12666 KWFFQKLRF 9 67 433.91680466671517 1298.7285846003456 3 433.9165344238281 MULTI HCD FTMS 0 0 0 13088 67456.1484375 0.08127537506047844 51 -1.3782081604003906 6 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 28.494509381512117 0.11816142465008336 2 KW{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}K{I|L}R{M(Oxidation (M))|F} 9 2 + 50.596 0 0 3.8958 3.8958 87.59 0 0 0 35.99153133413289 9.488474775526186 9.488474775526186 14.771212547196619 0 0.7742275032520141 0 0 0 KW{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}K{I|L}R{M(Oxidation (M))|F};KW{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[R{I|L}];{M(Oxidation (M))|F}WKQ{M(Oxidation (M))|F}K{I|L}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}WKQ{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[R{I|L}] 3.8958;2.7584;2.4269;1.2896 -;-;-;- 114 + NaN NaN 131080 NaN 9995 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13095 59.585 NaN 170030 35 0 19725 0.261 + 7131 FSARRTCRARW 11 72 470.58248635857876 1408.7256296759363 3 470.5826416015625 MULTI HCD FTMS 0 0 0 13088 54864.1953125 0.4292133934594897 2 -0.055446624755859375 7 Unmodified _FSARRTCRARW_ ENST00000457336.1_1_2:113402667-113403246:-|nuORF 6.234356020891411 0.3915788988406848 2 W 1 10 18.495 0 0 1.3129 0 0 1204.6363332665596 0 1204.6363332665596 0 18.494850021680094 0 0 0 0.5 0 0 0 + W 1.3129 + + 16 + NaN NaN 110987.4 NaN 9996 3097 13088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13097 59.59 NaN 16477000 35 0 3027900 0.327 + 5277 FFFFLFSFLFF 11 93 503.59306843662836 1507.757375910085 3 503.5936279296875 MULTI HCD FTMS 0 0 0 13096 6823115 0.7599189864056649 2 -0.0388946533203125 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 28.233623360808718 0.2127292296419295 2 E{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 -1 83.666 0 0 5.549 0 0 54.03162855006628 0 54.03162855006628 0 72.69641109986327 0 0 0 2.9247425010840047 0 0.8252574989159953 0.3494850021680094 E{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.549 - 1391 + NaN NaN 841859.5 NaN 9997 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13098 59.594 NaN 1115200 35 0 114440 0.261 + 5932 FPDPAGKLNQF 11 89 617.316973191258 1232.6193934493158 2 617.31689453125 MULTI HCD FTMS 0 0 0 13096 669877.75 0.3604194245297669 8 -0.18216705322265625 2 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 135.71846124360977 0.0037700962165978466 2 {M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F} 11 0 + 89.37 0 0 7.2504 7.2504 88.457 0 0 0 7.768576328577112 5.752574989159967 5.752574989159967 5.752574989159967 0 3.0088643834802156 0 0.3807196863200844 1.836696871556164 + + {M(Oxidation (M))|F}PDPAGK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPAGK{I|L}GGQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPQK{I|L}NQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPQK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPA[KA]VNQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}GGQ{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}N[AG]{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}PAGK{I|L}NQ{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDPAG{[VA]|[{I|L}G]}[KG]Q{M(Oxidation (M))|F} 7.2504;6.7838;6.5099;6.1085;6.0889;6.078;6.0432;6.0432;5.4882;5.4617 +;+;-;-;-;-;-;-;-;- + 1155 + NaN NaN 254484.3 NaN 9998 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13099 59.597 NaN 315500 35 0 75513 0.263 + 27417 SYTSGLETL 9 36 485.74014803698117 969.4657431407624 2 485.7401428222656 MULTI HCD FTMS 0 0 0 13096 223045.015625 0.27272974429333807 8 -0.18216705322265625 3 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 68.08070601005525 0.009709267492204555 2 ET{I|L} 3 6 43.94 0 0 4.5324 0 0 608.2804453699241 0 608.2804453699241 0 31.620768972555595 0 0 0 1 0 0.7742275032520141 0 + ET{I|L} 4.5324 + + 43 NaN NaN 138796.9 NaN 9999 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13100 59.601 NaN 234910 35 0 13190 0.261 -1 APFKFDMEL 9 68 557.2678650960022 1112.5211772588043 2 557.2679443359375 MULTI HCD FTMS 0 0 0 13096 152015.859375 0.24886149049206815 12 -0.29373931884765625 4 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 30.7034409873982 0.10802119112323902 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 -1 + 64.614 0 0 5.8079 5.8079 91.652 0 0 0 7.147642715192504 38.4163750790475 7.147642715192504 26.008337601396853 0 1.3494850021680094 0 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}[C(Carbamidomethyl (C))C]K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VS]{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E][YV]M[PS]Q{I|L};[{M(Oxidation (M))|F}E][YV][WE]K{I|L} 5.8079;3.4701;1.404;1.2917;0.59823 -;-;-;-;- 211 NaN NaN 120788.5 NaN 10000 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13101 59.604 NaN 55340 35 0 8207.6 0.263 + 12167 KKKKKKVKKI 10 38 419.3155432336928 NaN 0 419.31512451171875 PEAK HCD FTMS 0 0 0 13096 75348.28125 0.7125861042096722 4 -0.084136962890625 5 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 2 N 1 -1 1.2591 0 0 0.15049 0 0 418.62966937578557 300.92283044986567 719.5524998256512 0 0 0 0 0 0 0 0 0 N 0.15049 - 2 + NaN NaN 96582.7 NaN 10001 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13102 59.607 NaN 223950 35 0 15922 0.261 + 9840 HYQDVSCLQF 10 59 620.2767498491384 1238.5389467650766 2 620.2764892578125 MULTI HCD FTMS 0 0 0 13096 65040.36328125 0.3086403672023988 12 -0.29373931884765625 6 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 21.799462835604743 0.30720719660089946 2 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 9 5 62.77 0 0 5.0681 0 0 241.14239699531407 0 241.14239699531407 0 49.810990509216495 0 0 0 1.566901560044258 0 0.4247425010840047 0 CS[NP]SC{I|L}Q{M(Oxidation (M))|F} 5.0681 - 340 NaN NaN 117126.8 NaN 10002 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13103 59.611 NaN 304500 35 0 27304 0.261 + 31621 VYINTAQEF 9 78 542.7690314699639 1083.5235100067277 2 542.7694702148438 MULTI HCD FTMS 0 0 0 13096 76595.609375 0.5684133570417713 7 -0.14598464965820312 7 Unmodified _VYINTAQEF_ ENSG00000095059|ENST00000210060|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS 57.24910588100465 0.021429789259086996 2 [YV]{I|L}NTAEQ{M(Oxidation (M))|F} 9 2 + 68.672 0 0 6.3379 6.3379 84.847 0 0 0 0.7918124604762511 14.09256854528806 0.7918124604762511 0.7918124604762511 0 1.8979400086720375 1.0457574905606752 0.6382104921644451 0 [YV]{I|L}NTAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTAEQ{M(Oxidation (M))|F};[YV]{I|L}NTAQE{M(Oxidation (M))|F};[YV]{I|L}NTAE[AG]{M(Oxidation (M))|F};[YV]{I|L}GGTAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTAQE{M(Oxidation (M))|F};[Y{I|L}]VGGTAEQ{M(Oxidation (M))|F};[Y{I|L}]VNTAE[AG]{M(Oxidation (M))|F};[YT][KP]TAEQ{M(Oxidation (M))|F};[YV]S[Q{I|L}]AEQ{M(Oxidation (M))|F} 6.3379;6.2648;5.5579;5.488;5.488;5.4848;5.415;5.415;4.7528;4.7227 -;-;+;-;-;-;-;-;-;- + 2658 NaN NaN 134044.7 NaN 10003 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13104 59.614 NaN 124820 35 0 7924.6 0.261 -1 0 60 495.00835220920135 1976.0043029704054 4 494.8121337890625 MULTI HCD FTMS 0 0 0 13096 32759.921875 0.37696587451395613 19 -0.48035430908203125 8 NaN NaN 2 N 1 -1 5.4846 0 0 0.27756 0 0 1500.7869344400626 358.1617700159629 1858.9487044560256 0 0 0 0 0 0 0 0 0 N 0.27756 - 3 + NaN NaN 103515.4 NaN 10004 3098 13096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13106 59.619 NaN 553340 35 0 70452 0.327 + 18859 NAELWQVSW 9 84 566.7753210247591 1131.5360891163182 2 566.774658203125 MULTI HCD FTMS 0 0 0 13105 98900.3359375 0.3498280489558639 44 -1.1684761047363281 1 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 2 SVSW 4 6 51.23 0 0 4.5275 0 0 654.3087780259946 0 654.3087780259946 0 32.27752226111541 0 0 0 1.8494850021680094 0 0.3807196863200844 0 SVSW 4.5275 - 479 NaN NaN 175267 NaN 10005 3099 13105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13107 59.623 NaN 145380 35 0 14801 0.261 + 12704 KWPDRITLL 9 54 571.3399750339152 1140.6653971346302 2 571.3402099609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KWPDRITLL_ ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C 8.745405648335112 0.2847203663274469 2 KW 2 7 24.776 0 0 2.1721 0 0 0 823.4678423320028 823.4678423320028 18.322646798160562 0 0 0 0 0.3807196863200844 0 0 0 + KW 2.1721 + + 20 + NaN NaN 128872.1 NaN 10006 3099 13105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13109 59.628 NaN 570090 35 0 45245 0.327 + -1 LRRSFSRCMFF 11 82 508.2525609798034 1521.7358535396102 3 508.58697509765625 MULTI HCD FTMS 0 0 0 13108 67700.9609375 0.39921145615950543 1 -0.0258026123046875 1 Carbamidomethyl (C),Oxidation (M) _LRRSFSRC(Carbamidomethyl (C))M(Oxidation (M))FF_ REV__ENSG00000138271|ENST00000260843|GPR87 6.623454094837244 0.3898724468670146 2 GY[NG]YQ[DP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 -1 56.982 0 0 3.7445 0 0 202.13141066718907 0 202.13141066718907 0 39.39652316693066 0 0 0 1 0 0.8494850021680094 0 GY[NG]YQ[DP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7445 - 922 NaN NaN 172489.1 NaN 10007 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13110 59.633 NaN 886560 35 0 341140 0.261 + 15092 LMEKERMIF 9 79 598.8120552070914 1195.6095574809826 2 599.31298828125 MULTI HCD FTMS 0 0 0 13108 82310.421875 0.5592872156752162 1 -0.0258026123046875 2 Unmodified _LMEKERMIF_ ENST00000354752.5_1_9:99922575-99942308:-|nuORF 19.256988751693697 0.19398022840297344 2 {I|L}R{[HG]|PP}[HM]W{I|L}{M(Oxidation (M))|F} 9 6 + 23.719 0 0 1.9838 1.9838 81.688 0 0 0 3.797568461734855 2.300821617046939 2.300821617046939 4.573259432077563 0 0.5114393726401688 0 0 0.3252574989159953 {I|L}R{[HG]|PP}[HM]W{I|L}{M(Oxidation (M))|F};{I|L}R[WE]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};R{I|L}{[HG]|PP}[HM]W{I|L}{M(Oxidation (M))|F};R[HK]Y{M(Oxidation (M))|F}{[DA]|[EG]}{I|L}{M(Oxidation (M))|F};R{I|L}[WE]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};{I|L}[VG][WE]{M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F};[VG]{I|L}[WE]{M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F};[VG][HK]Y{M(Oxidation (M))|F}{[TV]|[{I|L}S]}V{M(Oxidation (M))|F};R[C(Carbamidomethyl (C))K][WM]R{I|L}{M(Oxidation (M))|F} 1.9838;1.6013;1.46;1.4497;1.319;1.3127;1.3025;0.69613;0.27759 -;-;-;-;-;-;-;-;- 335 + NaN NaN 226330.9 NaN 10008 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13111 59.636 NaN 284560 35 0 20186 0.261 + 5521 FLDGNEMTL 9 63 528.2394461257605 1054.464339318321 2 528.2396240234375 MULTI HCD FTMS 0 0 0 13108 86461.171875 0.5329277886007792 4 -0.09082412719726562 3 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 51.629811660486645 0.02929079705179888 2 [YT]P{[QG]|[NA]}E{M(Oxidation (M))|F}T{I|L} 9 4 + 45.956 0 0 4.3582 4.3582 83.232 0 0 0 8.23908740944318 14.973024840566467 8.23908740944318 4.304009240123889 0 1.0356668758921828 1.3979400086720375 0 0.7059771852360797 [YT]P{[QG]|[NA]}E{M(Oxidation (M))|F}T{I|L};[YT]PE{[QG]|[NA]}{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DD{[QG]|[NA]}{M(Oxidation (M))|F}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}C]|[YS]}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L} 4.3582;3.9501;3.5769;3.1687;1.3696 -;-;+;-;- + 379 NaN NaN 130155.7 NaN 10009 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13112 59.639 NaN 361180 35 0 26604 0.261 + 9895 IASLDSPQL 9 70 472.2585857125409 942.5026184918818 2 472.258544921875 MULTI HCD FTMS 0 0 0 13108 113278.7265625 0.9976242940274824 -5 0.11374664306640625 4 Unmodified _IASLDSPQL_ ENSG00000092295|ENST00000206765|TGM1;nc|ENSG00000092295|P22735-2|TGM1 45.69961567697781 0.039180348357221985 2 SPQ{I|L} 4 5 36.128 0 0 3.8332 0 0 499.2647246446431 0 499.2647246446431 0 16.66386562212267 0 0 0 1.242992819099939 0 0.75 0 + SPQ{I|L} 3.8332 + + 267 NaN NaN 146358 NaN 10010 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13113 59.643 NaN 251300 35 0 30734 0.261 -1 PWMRLDCLRFF 11 50 514.2560891780511 1539.746438134353 3 514.5899047851562 MULTI HCD FTMS 0 0 0 13108 80035.1953125 0.8506741118848694 -1 0.00949859619140625 5 Carbamidomethyl (C) _PWMRLDC(Carbamidomethyl (C))LRFF_ ENST00000268182.9_1_15:90972869-90982583:+|nuORF 3.8459078486920597 0.402053821155582 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.3509 0 0 1114.513736714238 0 1114.513736714238 0 30.713337517843655 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3509 - 31 NaN NaN 128223 NaN 10011 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13114 59.646 NaN 213320 35 0 18708 0.261 + 24567 RYLNEFEEL 9 60 606.7980308009771 1211.5815086687542 2 606.7842407226562 MULTI HCD FTMS 0 0 0 13108 41533.58984375 0.021383538952338344 34 -0.9138946533203125 6 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 23.789781309258295 0.1548179064208189 2 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L} 9 2 + 48.031 0 0 3.9643 3.9643 85.548 0 0 0 4.137342758552691 31.733937431123277 4.137342758552691 9.208187539523749 0 0.7742275032520141 0 0.4247425010840047 0 [Y{I|L}]RNE{M(Oxidation (M))|F}EE{I|L};[Y{I|L}]RGGE{M(Oxidation (M))|F}EE{I|L} 3.9643;3.2043 -;- 500 NaN NaN 114184.9 NaN 10012 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13115 59.649 NaN 192760 35 0 40614 0.264 + 20465 PATPVSVPL 9 51 440.76049113053665 879.5064293278733 2 440.76031494140625 MULTI HCD FTMS 0 0 0 13108 87149.6875 0.8107950561908166 -1 0.00949859619140625 7 Unmodified _PATPVSVPL_ REV__ENSG00000187323|ENST00000442544|DCC;REV__ENST00000579702.1_1_18:51025702-51053171:+|nuORF;REV__ROCK1-DCC|1|fusion 34.10243960390752 0.09241788333544565 2 S[VP]{I|L} 4 -1 31.682 0 0 3.6023 0 0 465.2593902515874 0 465.2593902515874 0 16.197887582883936 0 0 0 1.4247425010840047 0 0.4247425010840047 0 S[VP]{I|L} 3.6023 + + 31 + NaN NaN 118986 NaN 10013 3100 13108 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13117 59.654 NaN 1301500 35 0 147280 0.327 + 27090 SYMGHFDLL 9 109 549.7498633743731 1097.4851738155462 2 549.75 MULTI HCD FTMS 0 0 0 13116 794380.625 0.08645442715362099 21 -0.5467338562011719 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 120.45040980043947 0.0012363446172167195 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 51.906 0 0 4.7296 4.7296 83.649 0 0 0 4.062755376215975 4.062755376215975 4.062755376215975 4.062755376215975 0 1.805462187404089 0 1.2971062485323517 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}{[HG]|PP}[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}VE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}EV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}WE{M(Oxidation (M))|F}KN;{[{M(Oxidation (M))|F}C]|[YS]}YR{M(Oxidation (M))|F}SY{I|L} 4.7296;4.3594;3.7277;3.5035;3.4814;3.0677;2.7894;2.6506;2.4137;1.9787 +;-;-;-;-;-;-;-;-;- + 2675 NaN NaN 287042.1 NaN 10014 3101 13116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13118 59.659 NaN 919890 35 0 250530 0.261 + 32018 VYPLMKEYF 9 72 603.2992016658338 1204.5838503984676 2 603.2993774414062 MULTI HCD FTMS 0 0 0 13116 454332.125 0.11317724132480748 39 -1.0580635070800781 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 63.960520009940105 0.0120409805053046 2 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 77.159 0 0 6.4054 6.4054 86.581 0 0 0 19.189615513722202 4.771212547196626 4.771212547196626 4.771212547196626 0 2.1747425010840047 1.6989700043360187 0.3807196863200844 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}V{M(Oxidation (M))|F}Y;[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}Y;[YV]P{I|L}G[{M(Oxidation (M))|F}T]VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}YV{M(Oxidation (M))|F};[YV]P{I|L}G[{M(Oxidation (M))|F}T]V{M(Oxidation (M))|F}Y;VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}VY 6.4054;6.0093;5.8631;5.4671;5.2226;5.094;4.8266;4.8124;4.8087;4.7784 -;-;+;-;-;-;-;-;-;- + 526 NaN NaN 233160.1 NaN 10015 3101 13116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13119 59.662 NaN 816900 35 0 61379 0.261 + 13316 KYMDVQFDF 9 78 604.7681116504034 1207.5216703676067 2 604.7681274414062 MULTI HCD FTMS 0 0 0 13116 223595.953125 0.05907153977603001 27 -0.7177734375 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 74.19965305603844 0.007729275404663812 2 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 3 + 69.886 0 0 5.7875 5.7875 89.582 0 0 0 4.08748409920328 48.99527338021214 4.08748409920328 11.760912590556813 0 1.5 1.3010299956639813 0.3807196863200844 0.9194451763165201 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{[DS]|[MA]|[CV]|TT}{[MG]|[TS]}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YD{M(Oxidation (M))|F} 5.7875;4.8136;4.4987;4.2672;4.0858;4.0657;3.5449;3.3612;3.3232;3.2154 -;-;-;-;-;-;-;-;-;- 1425 NaN NaN 209068.4 NaN 10016 3101 13116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13120 59.665 NaN 344600 35 0 32454 0.261 + 32246 VYTTTVHWL 9 77 560.2952627154932 1118.5759724977863 2 560.2955322265625 MULTI HCD FTMS 0 0 0 13116 158181.03125 0.14336739774756133 14 -0.3533287048339844 4 Unmodified _VYTTTVHWL_ ENSG00000174231|ENST00000304992|PRPF8 67.34385681178166 0.00994769994983633 2 [YV]T[YK]{M(Oxidation (M))|F} 6 6 41.004 0 0 3.6657 0 0 0 314.1493727265551 314.1493727265551 22.420299789533402 0 0 0 0 1.305462187404089 2 0.3054621874040891 0 [YV]T[YK]{M(Oxidation (M))|F} 3.6657 - 287 NaN NaN 137565.4 NaN 10017 3101 13116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13121 59.669 NaN 84800 35 0 5259.9 0.263 -1 RARMTPAPASF 11 51 421.5486202193813 NaN 0 421.54864501953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))RARM(Oxidation (M))TPAPASF_ FGF23|p.C206F|1|0.31|ENSG00000118972|chr12:4370482-4370482|C/A|missense_variant 2.843284757254958 0.33405456343542356 2 Y 1 -1 3.9794 0 0 0.47313 0 0 542.9521465893501 132.0454500787719 674.997596668122 0 0 0 0 0 0 0 0 0 Y 0.47313 - 4 + NaN NaN 104810.9 NaN 10018 3101 13116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13123 59.674 NaN 1198900 35 0 174010 0.327 + 4753 EYTAKIALL 9 77 511.29993413349575 1020.5853153337915 2 511.2999572753906 MULTI HCD FTMS 0 0 0 13122 606003.125 0.7768205817295402 2 -0.045581817626953125 1 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 85.27202061508552 0.004649858145912257 2 [YE]TAK{I|L}A{I|L}{I|L} 9 0 + 68.509 0 0 6.7127 6.7127 94.017 0 0 0 9.302783972289888 10.642492736872597 9.302783972289888 40.753800256993955 0 1.4802046884880937 1.5228787452803376 0.2614393726401688 0 + + [YE]TAK{I|L}A{I|L}{I|L};[YE][K{I|L}][TA]A{I|L}{I|L};[YE][K{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[DV]K{I|L}A{I|L}{I|L};[{I|L}A]{I|L}K[TA][YE]{I|L} 6.7127;2.7195;2.3797;2.2973;0.59696 +;-;-;-;- + 443 + NaN NaN 262343.9 NaN 10019 3102 13122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13124 59.678 NaN 638140 35 0 107210 0.261 + 8788 HIIDDALVRL 10 100 582.8400429906546 1163.6655330481092 2 582.8402709960938 MULTI HCD FTMS 0 0 0 13122 180450.9375 0.3546253607402582 8 -0.20960235595703125 2 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 75.5705956163825 0.010984675281887875 2 H{I|L}{I|L}DDA{I|L}VR{I|L} 10 0 + 85.582 0 0 7.3545 7.3545 86.548 0 0 0 0.5237875363565792 6.645293596321125 0.5237875363565792 0.5237875363565792 0 3.135151878060192 1.6989700043360187 0.3252574989159953 0.5114393726401688 + + H{I|L}{I|L}DDA{I|L}VR{I|L};{I|L}H{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}DD{I|L}AVR{I|L};{I|L}H{I|L}DD{I|L}AVR{I|L};[H{I|L}]{I|L}DDA{I|L}VR{I|L};H{I|L}{I|L}D[TP]TVR{I|L};{I|L}H{I|L}D[TP]TVR{I|L};[H{I|L}]{I|L}D[{I|L}P]TSR{I|L} 7.3545;7.3095;7.2812;7.2362;6.7835;6.4755;6.4305;4.0866 +;-;-;-;+;-;-;- + 844 + NaN NaN 183422.6 NaN 10020 3102 13122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13125 59.682 NaN 575250 35 0 28268 0.261 + 21068 PLYKLFPDA 9 80 532.2940418506458 1062.5735307680916 2 532.2823486328125 MULTI HCD FTMS 0 0 0 13122 30010.888671875 0.9505452269382788 -1 0.019439697265625 3 Unmodified _PLYKLFPDA_ REV__ENSG00000133101|ENST00000255465|CCNA1;REV__nc|ENSG00000133101|P78396-2|CCNA1;REV__nc|ENSG00000133101|P78396|CCNA1 16.942295170755138 0.21397866736869717 2 VA{M(Oxidation (M))|F}{[ET]|[MV]}{M(Oxidation (M))|F} 6 -1 29.328 0 0 2.7601 0 0 350.2628321137059 0 350.2628321137059 0 -2.153047837384186 -2.153047837384186 0 0 0 0 0.6307196863200843 0 VA{M(Oxidation (M))|F}{[ET]|[MV]}{M(Oxidation (M))|F} 2.7601 - 427 + NaN NaN 176285.5 NaN 10021 3102 13122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13126 59.685 NaN 770030 35 0 310360 0.261 + 10154 IFSASDTPVIF 11 81 598.8120552070914 1195.6095574809826 2 598.8108520507812 MULTI HCD FTMS 0 0 0 13122 66839.3515625 0.3220851969148261 6 -0.15389633178710938 4 Unmodified _IFSASDTPVIF_ ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4 11.494710602746466 0.35692862141139436 2 {I|L}{M(Oxidation (M))|F} 2 9 16.198 0 0 1.3548 0 0 917.4612463724926 0 917.4612463724926 0 5.127881306118454 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.3548 + + 157 NaN NaN 202714.3 NaN 10022 3102 13122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13127 59.688 NaN 405000 35 0 55045 0.261 + 16775 LYDPVISKL 9 75 524.3081643731598 1046.6017758131195 2 524.3070678710938 MULTI HCD FTMS 0 0 0 13122 101279.40625 0.29550909183415375 -4 0.084136962890625 5 Unmodified _LYDPVISKL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1 49.52724829834842 0.03223213920720493 2 {I|L}YD[VP]{I|L}SK{I|L} 9 0 + 70.842 0 0 6.7687 6.7687 87.803 0 0 0 50.57074336417443 5.756886463274284 5.756886463274284 6.3823531182862325 0 2.4802046884880937 2 0.75 0 + + {I|L}YD[VP]{I|L}SK{I|L};[Y{I|L}]D[VP]{I|L}SK{I|L};{I|L}YD[VP][KT]V{I|L} 6.7687;6.1589;4.313 +;+;- + 262 + NaN NaN 148696.4 NaN 10023 3102 13122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13128 59.692 NaN 193920 35 0 8074.3 0.261 + -1 YPNNGVMPVLC 11 38 640.2925510487802 1278.5705491643603 2 640.2918701171875 MULTI HCD FTMS 0 0 0 13122 31213.0859375 0.4241421664900856 5 -0.11757278442382812 6 Carbamidomethyl (C),Oxidation (M) _YPNNGVM(Oxidation (M))PVLC(Carbamidomethyl (C))_ REV__ENSG00000128789|ENST00000317615|PSMG2;REV__nc|ENSG00000128789|Q969U7-2|PSMG2 1.3295316138638542 0.4130897924953357 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.54668 0 0 148.12590741914488 980.3565767877561 1128.482484206901 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54668 + + 3 + NaN NaN 136948.9 NaN 10024 3102 13122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13130 59.696 NaN 8190400 35 0 628960 0.327 + 13176 KYLSVQGQLF 10 107 591.8296046129591 1181.644656292718 2 591.8299560546875 MULTI HCD FTMS 0 0 0 13129 6281523 0.9179949887872471 1 -0.022823333740234375 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 155.95374464489888 5.8393979938831734E-08 2 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 95.996 0 0 8.1239 8.1239 91.362 0 0 0 9.788107009300617 15.638181262758266 9.788107009300617 9.146518864155126 0 2.5669015600442577 1.154901959985743 1.3851518780601921 1.031234684152075 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}AN{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{M(Oxidation (M))|F}{I|L};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}AGG{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}AN{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F} 8.1239;7.3499;7.3484;7.2956;7.2635;7.2136;6.8005;6.5743;6.5215;6.52 -;-;-;-;-;+;-;-;-;- + 15371 NaN NaN 619024.4 NaN 10025 3103 13129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13131 59.701 NaN 998180 35 0 226820 0.261 + 33511 YIDTHTTLL 9 75 538.7846388257533 1075.5547247183065 2 538.7847290039062 MULTI HCD FTMS 0 0 0 13129 429444.46875 0.8057360415913 1 -0.022823333740234375 2 Unmodified _YIDTHTTLL_ tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1 32.30548876998284 0.10066689432505688 2 TT{I|L}{I|L} 4 5 46.983 0 0 4.3682 0 0 629.2814808576187 0 629.2814808576187 0 33.00312209084183 0 0 0 1.2302046884880937 0 0.9247425010840047 0 + TT{I|L}{I|L} 4.3682 + + 115 NaN NaN 242827.7 NaN 10026 3103 13129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13132 59.704 NaN 413020 35 0 58703 0.263 + 7060 FQLFVYEQF 9 71 407.5377638952061 1219.5914622858184 3 407.5377502441406 MULTI HCD FTMS 0 0 0 13129 92397.1328125 0.6188379830295663 2 -0.039089202880859375 3 Unmodified _FQLFVYEQF_ REV__ENSG00000184344|ENST00000329913|GDF3 14.405379775768559 0.2358970535022398 2 KY 2 -1 20.969 0 0 1.7194 0 0 0 925.4091418644103 925.4091418644103 2.156818820794939 0 0 0 0 0 0 0 0 KY 1.7194 - 105 + NaN NaN 149069.7 NaN 10027 3103 13129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13133 59.708 NaN 495670 35 0 79079 0.261 + 20950 PLEDQTQL 8 74 472.2403844687086 942.4662160042172 2 472.24017333984375 MULTI HCD FTMS 0 0 0 13129 159638.515625 0.4215514453460015 -3 0.06800079345703125 4 Unmodified _PLEDQTQL_ ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18288394-18288718:+|nuORF;IFI30|p.L222F|1|0.42|ENSG00000216490|chr19:18177738-18177738|C/T|missense_variant 43.85829265575387 0.18136530125488975 2 P{I|L}SSDSPQ{I|L} 9 4 + 60.114 0 0 6.3783 6.3783 91.099 0 0 0 13.861879389650625 13.861879389650625 13.861879389650625 13.861879389650625 0 1.1677353201839438 1.6989700043360187 0 0.9896518287104438 P{I|L}SSDSPQ{I|L};[{I|L}P]SEAADQ{I|L};[{I|L}P]E[QT]DQ{I|L};[{I|L}P]ESAADQ{I|L};[{I|L}P]SEAAD[AG]{I|L};[{I|L}P]E[QT]D[AG]{I|L};{[QN]|[E{I|L}]|[KN]}P[QT]DQ{I|L};[{I|L}P]ESAAD[AG]{I|L};P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ET]|[MV]}PQ{I|L};{[QN]|[E{I|L}]|[KN]}PSAADQ{I|L} 6.3783;4.9075;4.9029;4.4853;3.9305;3.9201;3.5219;3.5083;3.4886;3.1043 -;-;-;-;-;-;-;-;-;- 614 + NaN NaN 155702.9 NaN 10028 3103 13129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13134 59.711 NaN 378900 35 0 53381 0.261 -1 FVVEHDFIM 9 69 576.7734074464107 1151.5322619596213 2 577.7862548828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 18.13498045792455 0.20367413111508956 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.7789 0 0 986.4864378402839 0 986.4864378402839 0 7.04119982655925 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 1.7789 + + 46 + NaN NaN 151934.1 NaN 10029 3103 13129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13135 59.714 NaN 137840 35 0 8309.8 0.261 -1 FLNHNAYIMI 10 41 626.3110422339213 1250.6075315346425 2 626.3111572265625 MULTI HCD FTMS 0 0 0 13129 53780.25 0.5566748651853805 15 -0.399688720703125 6 Oxidation (M) _FLNHNAYIM(Oxidation (M))I_ SLC44A4|p.R557H|1|0.29|ENSG00000204385|chr6:31865514-31865514|C/T|missense_variant 3.2813086475875832 0.45793521633868084 2 PMK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 6 -1 25.406 0 0 2.0315 0 0 503.2143727033219 0 503.2143727033219 0 25.406075122407685 0 0 0 0 0 0 0 PMK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 2.0315 - 12 NaN NaN 112712.8 NaN 10030 3103 13129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13137 59.719 NaN 390420 35 0 79220 0.327 + 17448 LYSEVDVHF 9 57 554.7691773812119 1107.5238018292237 2 554.7693481445312 MULTI HCD FTMS 0 0 0 13136 150744.546875 0.4199600640444853 4 -0.10831451416015625 1 Unmodified _LYSEVDVHF_ ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 128.3654064809346 0.00070410514679239 2 {I|L}YSEVDVH{M(Oxidation (M))|F} 9 0 + 110.53 0 0 9.9801 9.9801 96.044 0 0 0 13.57840941039747 13.57840941039747 13.57840941039747 13.57840941039747 0 2.973197507588033 1.6989700043360187 0.4247425010840047 0 + + {I|L}YSEVDVH{M(Oxidation (M))|F};[Y{I|L}]SEVDVH{M(Oxidation (M))|F};{I|L}YEE[TA]VH{M(Oxidation (M))|F};[Y{I|L}]W{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VH{M(Oxidation (M))|F};{I|L}YEEV[TA]H{M(Oxidation (M))|F} 9.9801;8.7541;5.8961;5.2059;4.583 +;+;-;-;- + 238 + NaN NaN 141894.5 NaN 10031 3104 13136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13138 59.724 NaN 324670 35 0 27917 0.261 + 24603 RYLPQCSYF 9 76 588.7792897768071 1175.5440266204141 2 588.7797241210938 MULTI HCD FTMS 0 0 0 13136 73081.9140625 0.3977706354186138 10 -0.2621574401855469 2 Unmodified _RYLPQCSYF_ ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2 32.78568957990786 0.09846250359632436 2 CSY{M(Oxidation (M))|F} 4 5 38.889 0 0 3.3081 0 0 657.358024492887 0 657.358024492887 0 15.013487579716767 0 0 0 0.9247425010840047 0 0.8494850021680094 0 + CSY{M(Oxidation (M))|F} 3.3081 + + 127 NaN NaN 141250.3 NaN 10032 3104 13136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13139 59.727 NaN 146020 35 0 14762 0.263 + 3199 EDDLALAAL 9 51 465.7429706598574 929.4713883865148 2 465.74249267578125 MULTI HCD FTMS 0 0 0 13136 37436.1171875 0.35545348995228204 7 -0.19019699096679688 3 Unmodified _EDDLALAAL_ REV__ENST00000575282.5_1_17:78187814-78194112:-|nuORF 15.847184025352803 0.2234401846867398 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV][HA]AA{I|L} 9 -1 + 34.484 0 0 3.7101 3.7101 89.25 0 0 0 0.033788924207989623 27.036976547284944 0.033788924207989623 34.48425149625188 0 0.8252574989159953 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DV][HA]AA{I|L} 3.7101 - 53 NaN NaN 108217.7 NaN 10033 3104 13136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13140 59.731 NaN 135200 35 0 11219 0.261 + -1 KWSSLCTLF 9 47 571.2879436302601 NaN 0 571.287353515625 PEAK HCD FTMS 0 0 0 13136 25355.5625 0.9260149462910464 1 -0.016265869140625 4 Carbamidomethyl (C) _KWSSLC(Carbamidomethyl (C))TLF_ REV__ENSG00000196177|ENST00000358776|ACADSB;REV__ENST00000368869.8_2_10:124768499-124799992:+|nuORF 4.75600775471527 0.27219989241163056 2 W 1 -1 6.9897 0 0 0.61283 0 0 127.98684569364782 823.4683971278938 951.4552428215417 0 0 0 0 0 0 0 0 0 W 0.61283 + + 3 + NaN NaN 112459.1 NaN 10034 3104 13136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13142 59.736 NaN 7836100 35 0 1389500 0.327 + 5278 FFFFLFSFLFF 11 93 503.59306843662836 1507.757375910085 3 503.593505859375 MULTI HCD FTMS 0 0 0 13141 2615419.75 0.29129028683311914 9 -0.24589157104492188 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 28.233623360808718 0.2127292296419295 2 {M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 86.477 0 0 5.7355 0 0 183.08940567361088 0 183.08940567361088 0 75.50820653692661 0 0 0 2.8494850021680094 0 0.8252574989159953 0.6109243748081782 {M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.7355 - 839 + NaN NaN 761777.4 NaN 10035 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13143 59.74 NaN 697220 35 0 104830 0.261 -1 0 73 579.0945209555476 2890.4362224447377 5 579.3082885742188 MULTI HCD FTMS 0 0 0 13141 16877.716796875 1 0 0 2 NaN NaN 2 YY{I|L}SK{I|L}EE 8 -1 45.003 0 0 1.557 0 0 0 1861.9052815757684 1861.9052815757684 22.09544243948811 0 0 0 0 0 2 0.28872548999643577 0 YY{I|L}SK{I|L}EE 1.557 - 327 NaN NaN 190798.9 NaN 10036 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13144 59.744 NaN 364760 35 0 110010 0.261 + 5740 FPAGYMYPSM 10 70 598.2437384201628 1194.4729239071255 2 598.2435913085938 MULTI HCD FTMS 0 0 0 13141 66070.0390625 0.22649544928934182 -34 0.8222274780273438 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 46.603 0 0 3.9016 0 0 535.2431507794937 0 535.2431507794937 0 39.61365548489135 0 0 0 1.6861818737241734 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.9016 + + 137 NaN NaN 146406.9 NaN 10037 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13145 59.747 NaN 192260 35 0 7266.4 0.461 -1 APFKFDMEL 9 65 557.2678650960022 1112.5211772588043 2 557.2674560546875 MULTI HCD FTMS 0 0 0 13141 77755.6015625 0.1272918166466875 19 -0.5111732482910156 4 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 26.020703789607367 0.13554323117744113 2 {M(Oxidation (M))|F}E{I|L} 3 -1 33.94 0 0 3.0507 0 0 705.3485584943375 0 705.3485584943375 0 7.742275032520141 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}E{I|L} 3.0507 + + 171 NaN NaN 122057 NaN 10038 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13146 59.754 NaN 206730 35 0 13853 0.261 + 24568 RYLNEFEEL 9 66 606.7980308009771 1211.5815086687542 2 606.7985229492188 MULTI HCD FTMS 0 0 0 13141 51240.79296875 0.02638128552138272 39 -1.0913887023925781 5 Unmodified _RYLNEFEEL_ ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 31.26834338654808 0.10542797264966089 2 {M(Oxidation (M))|F}EE{I|L} 4 5 43.488 0 0 3.5893 0 0 675.3364735334 0 675.3364735334 0 37.51857202580155 0 0 0 0.7742275032520141 0 0.3807196863200844 0 + {M(Oxidation (M))|F}EE{I|L} 3.5893 + + 47 NaN NaN 115345.2 NaN 10039 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13147 59.757 NaN 116310 35 0 18161 0.264 + 31296 VWFPGGAF 8 39 440.72126228054947 NaN 0 440.7207336425781 PEAK HCD FTMS 0 0 0 13141 37532.80078125 0.020381263984600887 59 -1.6531982421875 6 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.38822285293237185 2 S 1 8 5.4846 0 0 0.62365 0 0 465.1801821765302 324.1925448053344 789.3727269818646 0 0 0 0 0 0 0 0 0 S 0.62365 - 8 + NaN NaN 112401.7 NaN 10040 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13148 59.76 NaN 127670 35 0 27836 0.261 + 27418 SYTSGLETL 9 48 485.74014803698117 969.4657431407624 2 485.7403869628906 MULTI HCD FTMS 0 0 0 13141 68020.5234375 0.0831725376683516 15 -0.416351318359375 7 Unmodified _SYTSGLETL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 25.399314129420986 0.14091189997036632 2 ET{I|L} 3 6 36.198 0 0 3.7338 0 0 608.2800750681679 0 608.2800750681679 0 30.255762612236907 0 0 0 1 0 0 0 + ET{I|L} 3.7338 + + 41 NaN NaN 109403.7 NaN 10041 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13149 59.764 NaN 178400 35 0 18761 0.261 + -1 VEGFHMYI 8 55 506.2337695405634 NaN 0 506.2338562011719 PEAK HCD FTMS 0 0 0 13141 22835.37890625 0.1467874605188318 58 -1.6372108459472656 8 Oxidation (M) _VEGFHM(Oxidation (M))YI_ REV__ENSG00000079999|ENST00000171111|KEAP1 8.593279151180031 0.38822285293237185 2 Y 1 -1 11.99 0 0 1.1866 0 0 131.09722374174368 713.2724855672492 844.3697093089929 0 0 0 0 0 0.5 0 0 0 Y 1.1866 + + 9 + NaN NaN 118241.8 NaN 10042 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13150 59.767 NaN 166090 35 0 7507.2 0.261 -1 MPMQDIKMIL 10 46 626.3110422339213 1250.6075315346425 2 626.8145751953125 MULTI HCD FTMS 0 0 0 13141 20622.1484375 0.336163803689615 3 -0.09204864501953125 9 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 14.405379775768559 0.37636895476610294 2 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 37.423 0 0 2.9924 0 0 731.2995357849077 0 731.2995357849077 0 33.44335023848103 0 0 0 0.8494850021680094 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 2.9924 + + 12 NaN NaN 114720.8 NaN 10043 3105 13141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13152 59.772 NaN 608120 35 0 73640 0.327 -1 LCNDGSLLLQ 10 86 566.7881442458904 NaN 0 566.7749633789062 PEAK HCD FTMS 0 0 0 13151 10067.0625 1 0 0 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))NDGSLLLQ_ ENSG00000160593|ENST00000356289|JAML;ENST00000531536.1_1_11:118076554-118083145:-|nuORF;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-2|JAML;nc|ENSG00000160593|Q86YT9-3|JAML;nc|ENSG00000160593|Q86YT9-4|JAML 10.823927491677226 0.33092050725491123 2 SVS[YT]VS 7 -1 22.184 0 0 1.9605 0 0 204.11653874080338 201.0667666070922 405.1833053478956 0 0 0 0 0 0 0 0.6989700043360187 0 SVS[YT]VS 1.9605 - 335 + NaN NaN 179805.6 NaN 10044 3106 13151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13153 59.776 NaN 247600 35 0 18170 0.261 + 4688 EYPDRIMNTF 10 62 643.297686036255 1284.5808191393098 2 643.2979736328125 MULTI HCD FTMS 0 0 0 13151 98192.7578125 0.03659451647839008 41 -1.1437721252441406 2 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 43.981846655682396 0.11085276043338313 2 NT{M(Oxidation (M))|F} 3 7 29.966 0 0 2.3327 0 0 904.4101429669937 0 904.4101429669937 0 2.2505471016818746 0 0 0 0.805462187404089 0 0.5 0 + NT{M(Oxidation (M))|F} 2.3327 + + 48 NaN NaN 128936.5 NaN 10045 3106 13151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13154 59.78 NaN 212750 35 0 12576 0.261 + 9841 HYQDVSCLQF 10 64 620.2767498491384 1238.5389467650766 2 620.275390625 MULTI HCD FTMS 0 0 0 13151 51933.72265625 0.24644455261573503 20 -0.5413131713867188 3 Unmodified _HYQDVSCLQF_ ENSG00000065268|ENST00000585809|WDR18 19.625955294349634 0.3275374527965692 2 WSC{I|L}Q{M(Oxidation (M))|F} 6 5 48.053 0 0 3.8798 0 0 456.20805556465 0 456.20805556465 0 40.60525350536075 0 0 0 1.079689690656103 0 0 0 WSC{I|L}Q{M(Oxidation (M))|F} 3.8798 - 226 NaN NaN 126730.2 NaN 10046 3106 13151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13155 59.783 NaN 121500 35 0 9285.2 0.261 + 35036 YTIEQRYL 8 57 543.2850641565343 1084.5555753798685 2 543.285888671875 MULTI HCD FTMS 0 0 0 13151 18549.654296875 0.04030461907283254 28 -0.7706222534179688 4 Unmodified _YTIEQRYL_ tr|U7SU73|U7SU73_FUSNUDUF4375domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01044PE=4SV=1 6.723162845929126 0.5320176132289695 2 KY{I|L} 3 6 29.693 0 0 2.7378 0 0 662.29008681465 0 662.29008681465 0 11.73393743112328 0 0 0 0.5 0 0 0 KY{I|L} 2.7378 - 87 NaN NaN 110397.6 NaN 10047 3106 13151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13156 59.786 NaN 95082 35 0 10383 0.263 + -1 WKESCKRSF 9 46 409.8696992157377 1226.587268247413 3 409.8696594238281 MULTI HCD FTMS 0 0 0 13151 7590.9248046875 0.03270462031119055 19 -0.5049514770507812 5 Carbamidomethyl (C) _WKESC(Carbamidomethyl (C))KRSF_ REV__ENSG00000176256|ENST00000681531|HMGB4 2.0860074813731053 0.33520356328030626 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3851 0 0 1061.5082104854973 0 1061.5082104854973 0 0.7918124604762511 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3851 + + 10 + NaN NaN 102340.5 NaN 10048 3106 13151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13158 59.791 NaN 1294400 35 0 133920 0.326 + 27091 SYMGHFDLL 9 106 549.7498633743731 1097.4851738155462 2 549.7501831054688 MULTI HCD FTMS 0 0 0 13157 748860.375 0.08150034467251867 27 -0.7510795593261719 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 96.28474662873226 0.004361282420133734 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 53.832 0 0 4.905 4.905 85.011 0 0 0 6.836521141505756 6.836521141505756 6.836521141505756 6.836521141505756 0 1.75 0 1.0010912013506126 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}{[HG]|PP}[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][QT]{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[DS]|[MA]|[CV]|TT}[HT]{M(Oxidation (M))|F}E{I|L} 4.905;4.2821;4.1646;4.0468;2.7835;2.7476;2.1652;1.4248;1.3069;1.2459 +;-;-;-;-;-;-;-;-;- + 1857 NaN NaN 282982.1 NaN 10049 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13159 59.796 NaN 874970 35 0 230860 0.261 + 32019 VYPLMKEYF 9 58 603.2992016658338 1204.5838503984676 2 603.2994384765625 MULTI HCD FTMS 0 0 0 13157 433634.90625 0.10802142250345277 45 -1.2618331909179688 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 60.07390631473393 0.0174780869009295 2 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 76.604 0 0 6.3594 6.3594 87.201 0 0 0 14.44537812595911 14.44537812595911 14.44537812595911 6.5321251377534395 0 1.8494850021680094 2 0.3494850021680094 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YK]E{M(Oxidation (M))|F};[YV]P{I|L}[VS]{[MS]|[{M(Oxidation (M))|F}A]}Y{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[YQ][Y{I|L}] 6.3594;5.8171;5.1602;4.9066;4.4659;4.2605;3.1592 -;+;-;-;-;-;- + 432 NaN NaN 224116.5 NaN 10050 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13160 59.799 NaN 643130 35 0 74466 0.261 + 5933 FPDPAGKLNQF 11 82 617.316973191258 1232.6193934493158 2 617.3165893554688 MULTI HCD FTMS 0 0 0 13157 213025.3125 0.11461563030198235 17 -0.4554481506347656 3 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 79.42699986076722 0.00619153599879033 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}YP 10 3 46.816 0 0 3.7981 0 0 0 144.04654120791307 144.04654120791307 30.64503146738063 0 0 0 0 1.3807196863200843 1.6989700043360187 0.7302046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DPAGK{I|L}YP 3.7981 - 433 NaN NaN 189730.3 NaN 10051 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13161 59.803 NaN 521450 35 0 272830 0.264 -1 0 54 427.3027308391812 852.5909087451624 2 427.30255126953125 MULTI HCD FTMS 0 0 0 13157 256567.34375 0.30237413352663306 -15 0.35504913330078125 4 NaN NaN 2 G{M(Oxidation (M))|F} 2 -1 14.693 0 0 1.7233 0 0 630.4905039373484 0 630.4905039373484 0 10.713337517843655 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.7233 - 11 + NaN NaN 163211.8 NaN 10052 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13162 59.806 NaN 524340 35 0 34233 0.261 + 35942 YYTVRNFTL 9 89 588.8064271818203 1175.5983014304404 2 588.8073120117188 MULTI HCD FTMS 0 0 0 13157 103144.4921875 0.5859096280931403 -2 0.05572509765625 5 Unmodified _YYTVRNFTL_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 59.368380827593164 0.01846506874148156 2 YYTVRN{M(Oxidation (M))|F}T{I|L} 9 0 + 63.817 0 0 5.4285 5.4285 83.242 0 0 0 18.327323045801798 44.151195111796355 18.327323045801798 0.5799194697768684 0 1.8182503180159344 2 0.7887254899964358 0.28872548999643577 + + YYTVRN{M(Oxidation (M))|F}T{I|L};YYTVR{M(Oxidation (M))|F}NT{I|L};YYTVRGG{M(Oxidation (M))|F}T{I|L};YYTVR{M(Oxidation (M))|F}GGT{I|L};YYTVR[QA]Y{I|L};[Y{I|L}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L};YYTVKK[NG]{[CT]|[{M(Oxidation (M))|F}G]};[YT]YVRN{M(Oxidation (M))|F}T{I|L};[YT]YVR{M(Oxidation (M))|F}NT{I|L};YYTV{[TV]|[{I|L}S]}{[QV]|[N{I|L}]|[RA]|[KV]}{[CT]|[{M(Oxidation (M))|F}G]} 5.4285;5.3791;4.6452;4.5959;4.44;3.0146;2.9318;2.7898;2.7404;2.7147 +;-;-;-;-;-;-;-;-;- + 754 NaN NaN 169372.9 NaN 10053 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13163 59.809 NaN 144210 35 0 21482 0.264 + 12667 KWFFQKLRF 9 57 433.91680466671517 1298.7285846003456 3 433.9163513183594 MULTI HCD FTMS 0 0 0 13157 76214.9765625 0.09182855749735025 61 -1.6485595703125 6 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 6.630372943996041 0.3007538891620783 2 KW 2 7 20.969 0 0 1.6146 0 0 0 981.5303379991694 981.5303379991694 12.016675202793722 0 0 0 0 0 0 0 0 + KW 1.6146 + + 26 + NaN NaN 104947.3 NaN 10054 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13164 59.813 NaN 301670 35 0 12350 0.261 + 24012 RWFDKTLQF 9 79 620.8277782632083 1239.6410035932165 2 620.826904296875 MULTI HCD FTMS 0 0 0 13157 53142.984375 0.5855613792500275 -2 0.05572509765625 7 Unmodified _RWFDKTLQF_ ENSG00000095321|ENST00000318080|CRAT;nc|ENSG00000095321|P43155-2|CRAT 23.789781309258295 0.1548179064208189 2 [RH]{I|L}TKD[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 10 5 + 30.92 0 0 2.4943 2.4943 81.737 0 0 0 5.368931070804592 4.330984399557423 4.330984399557423 4.330984399557423 0 0.7302046884880937 0 0 0.3494850021680094 [RH]{I|L}TKD[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[RH]{I|L}TKD[VP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[RH]{I|L}TWG[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{I|L}A][WH]KD[VP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}A]SWT{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[{I|L}A][WH]KD[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[RH]{I|L}T[VS]G[VP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[{I|L}A][WH]WG[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.4943;2.1449;1.9695;1.3599;1.3027;1.0595;0.88086;0.53471 -;-;-;-;-;-;-;- 743 + NaN NaN 144453.4 NaN 10055 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13165 59.816 NaN 183010 35 0 21236 0.263 + 7082 FRCDHCCL 8 46 498.6961015983057 995.3776502634114 2 498.6964416503906 MULTI HCD FTMS 0 0 0 13157 41827.52734375 0.8223981666741038 1 -0.03632354736328125 8 Unmodified _FRCDHCCL_ REV__ENSG00000134249|ENST00000369400|ADAM30;REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 2.302733041254933 0.5385759549224092 2 Q{I|L} 2 -1 20.969 0 0 2.1066 0 0 736.2176991193375 0 736.2176991193375 0 6.365006360318688 0 0 0 0 0 0 0 Q{I|L} 2.1066 - 5 NaN NaN 113132.3 NaN 10056 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13166 59.819 NaN 204240 35 0 19129 0.261 + 14554 LFHICFYI 8 61 528.2739968758092 1054.5334408184183 2 528.2749633789062 MULTI HCD FTMS 0 0 0 13157 40376.25 1 0 0 9 Unmodified _LFHICFYI_ REV__ENSG00000125505|ENST00000245615|MBOAT7;REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF;REV__nc|ENSG00000125505|Q96N66-2|MBOAT7 11.114462752807354 0.5120171699125776 2 S{I|L} 2 -1 19.464 0 0 1.8457 0 0 836.4260121076187 0 836.4260121076187 0 13.829087576549593 0 0 0 0 0 0 0 S{I|L} 1.8457 - 114 NaN NaN 121524.4 NaN 10057 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13167 59.823 NaN 141520 35 0 13588 0.261 + 532 APDAVYTEL 9 52 489.74252374882377 977.4704945644476 2 489.74273681640625 MULTI HCD FTMS 0 0 0 13157 32096.837890625 0.8938370879726949 1 -0.03632354736328125 10 Unmodified _APDAVYTEL_ ENSG00000089327|ENST00000392219|FXYD5 13.90604991867851 0.24021115267848145 2 YTE{I|L} 4 5 41.186 0 0 4.2135 0 0 453.2224592138254 0 453.2224592138254 0 41.18562527100117 0 0 0 0.9247425010840047 0 0 0 + YTE{I|L} 4.2135 + + 10 NaN NaN 116089.6 NaN 10058 3107 13157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13169 59.828 NaN 690470 35 0 56362 0.327 + 13317 KYMDVQFDF 9 76 604.7681116504034 1207.5216703676067 2 604.7680053710938 MULTI HCD FTMS 0 0 0 13168 278752.21875 0.07364320573522116 34 -0.9436149597167969 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 80.6760300276096 0.005633624786464751 2 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 3 + 70.934 0 0 5.8743 5.8743 85.113 0 0 0 3.23445525922196 6.886343361007263 3.23445525922196 3.23445525922196 0 1.5 1.3010299956639813 0.7302046884880937 0.6747425010840047 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q[MT]{[SA]|[TG]}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q{[QV]|[N{I|L}]|[RA]|[KV]}YD{M(Oxidation (M))|F} 5.8743;5.6065;4.8439;4.5566;4.3407;4.3407;4.0208;3.45;3.2582;3.0892 -;+;-;-;-;-;-;-;-;- + 1577 NaN NaN 201169.2 NaN 10059 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13170 59.832 NaN 644690 35 0 103120 0.261 + 32944 YAIREEIVL 9 77 553.3162092160621 1104.6178654989242 2 553.3163452148438 MULTI HCD FTMS 0 0 0 13168 323122.21875 0.7008815729056644 -2 0.055866241455078125 2 Unmodified _YAIREEIVL_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 41.95555342248728 0.056367691549927025 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}V{I|L} 9 0 + 55.67 0 0 5.0397 5.0397 85.678 0 0 0 8.753246544333777 14.869668158213543 8.753246544333777 8.010299956639813 0 1.4604093769761874 1.2218487496163564 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REEV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}REE{I|L}{I|L}V 5.0397;4.3145;3.9058 +;-;- + 953 NaN NaN 184150 NaN 10060 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13171 59.836 NaN 456600 35 0 49926 0.261 + 4754 EYTAKIALL 9 65 511.29993413349575 1020.5853153337915 2 511.30010986328125 MULTI HCD FTMS 0 0 0 13168 116557.125 0.14941172728642732 8 -0.20949172973632812 3 Unmodified _EYTAKIALL_ ENSG00000092820|ENST00000367075|EZR 46.020951573049366 0.037705236580089195 2 [YE]TAK{I|L}A{I|L}{I|L} 9 0 + 45.824 0 0 4.49 4.49 88.936 0 0 0 17.57515625508539 10.642492736872597 10.642492736872597 18.750612633916997 0 0.7742275032520141 1.0969100130080565 0 0 + + [YE]TAK{I|L}A{I|L}{I|L};[YE][KA]T{I|L}A{I|L}{I|L} 4.49;2.6528 +;- + 147 + NaN NaN 171811.1 NaN 10061 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13172 59.839 NaN 587760 35 0 63592 0.261 + 5811 FPAYERVVL 9 77 547.3059548371131 1092.597356741026 2 547.3060913085938 MULTI HCD FTMS 0 0 0 13168 220269.265625 0.5297332235881417 -7 0.17333602905273438 4 Unmodified _FPAYERVVL_ ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1 45.739877483867886 0.03899552410870734 2 {I|L}MAYE 5 6 68.32 0 0 6.253 0 0 0 482.30881677799067 482.30881677799067 53.716211412043705 0 0 0 0 1.2134679910804405 2 0.4247425010840047 0 {I|L}MAYE 6.253 - 186 + NaN NaN 171569.6 NaN 10062 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13173 59.842 NaN 404880 35 0 53950 0.261 + 16911 LYGESPWGVT 10 74 554.7691773812119 1107.5238018292237 2 555.7587890625 MULTI HCD FTMS 0 0 0 13168 14774.5810546875 0.13376624513401938 8 -0.20949172973632812 5 Unmodified _LYGESPWGVT_ ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB;nc|ENSG00000076555|O00763-3|ACACB 21.74664581756881 0.3077012291670537 2 T{I|L}E{M(Oxidation (M))|F}{[MG]|[TS]}T{M(Oxidation (M))|F} 8 8 41.776 0 0 3.772 0 0 163.10035872055226 0 163.10035872055226 0 13.091517729002206 0 0 0 0.3494850021680094 0 0.7134679910804405 0 T{I|L}E{M(Oxidation (M))|F}{[MG]|[TS]}T{M(Oxidation (M))|F} 3.772 - 157 + NaN NaN 142636 NaN 10063 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13174 59.846 NaN 415430 35 0 53725 0.261 + 8789 HIIDDALVRL 10 72 582.8400429906546 1163.6655330481092 2 582.8392944335938 MULTI HCD FTMS 0 0 0 13168 126776.9375 0.24914427055543928 14 -0.3733978271484375 6 Unmodified _HIIDDALVRL_ ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086-2|UBE3A;nc|ENSG00000114062|Q05086|UBE3A 42.312485326615175 0.12533928745458864 2 [H{I|L}]{I|L}DD{I|L}AVR{I|L} 10 2 + 60.399 0 0 5.1904 5.1904 82.698 0 0 0 0.2126659626698313 3.451753372113018 0.2126659626698313 0.2126659626698313 0 2.004432191740108 1.6989700043360187 0 0 [H{I|L}]{I|L}DD{I|L}AVR{I|L};{I|L}H{I|L}DD{I|L}AVR{I|L};H{I|L}{I|L}DD{I|L}AVR{I|L} 5.1904;5.1721;4.8938 -;-;- 122 NaN NaN 154115 NaN 10064 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13175 59.849 NaN 315510 35 0 19102 0.261 -1 FVVEHDFIM 9 56 576.7734074464107 1151.5322619596213 2 576.7730712890625 MULTI HCD FTMS 0 0 0 13168 60962.3828125 0.2041836213816291 25 -0.6953811645507812 7 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 23.1484247019978 0.1603590852062899 2 {I|L}{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.4933 0 0 873.4029417465339 0 873.4029417465339 0 5.752574989159953 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.4933 + + 24 + NaN NaN 139043.3 NaN 10065 3108 13168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13177 59.854 NaN 3058700 35 0 217340 0.327 + 13177 KYLSVQGQLF 10 118 591.8296046129591 1181.644656292718 2 591.8297729492188 MULTI HCD FTMS 0 0 0 13176 2220529 0.32451278049236737 7 -0.18331527709960938 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 117.76058876431921 4.161225987453182E-05 2 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 94.669 0 0 8.0116 8.0116 90.597 0 0 0 7.691220955970621 16.53212513775344 7.691220955970621 7.691220955970621 0 2.555462187404089 1.154901959985743 1.416386562212267 0.9456290139465234 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{M(Oxidation (M))|F}{I|L};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{M(Oxidation (M))|F}{I|L} 8.0116;7.3607;7.3456;7.236;6.8242;6.5851;6.5701;6.5004;6.0486;5.8495 -;+;-;-;-;-;-;-;-;- + 8303 NaN NaN 533079.4 NaN 10066 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13178 59.858 NaN 393820 35 0 89556 0.262 + 10630 IPSEQEQL 8 73 472.2403844687086 942.4662160042172 2 472.240234375 MULTI HCD FTMS 0 0 0 13176 256432.953125 0.6771528888311611 3 -0.07196044921875 2 Unmodified _IPSEQEQL_ ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 52.268347100219714 0.11372384022409306 2 P{I|L}S{[DS]|[MA]|[CV]|TT}SPQ{I|L} 9 5 + 47.801 0 0 5.0719 5.0719 90.887 0 0 0 13.86046240493748 9.626524973814199 9.626524973814199 32.4607625286837 0 1.25 2 0 0.5 P{I|L}S{[DS]|[MA]|[CV]|TT}SPQ{I|L};P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[ET]|[MV]}PQ{I|L} 5.0719;1.6276 -;- 104 + NaN NaN 151667.3 NaN 10067 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13179 59.862 NaN 455140 35 0 76125 0.261 + 16776 LYDPVISKL 9 64 524.3081643731598 1046.6017758131195 2 524.3079833984375 MULTI HCD FTMS 0 0 0 13176 249552.453125 0.7281343909730313 3 -0.07196044921875 3 Unmodified _LYDPVISKL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1 57.24910588100465 0.021429789259086996 2 {I|L}YD[VP]{I|L}SK{I|L} 9 0 + 88.606 0 0 8.4661 8.4661 94.524 0 0 0 66.95091486790744 7.900217704352457 7.900217704352457 13.252574989159953 0 2.6989700043360187 2 1.274227503252014 0 + + {I|L}YD[VP]{I|L}SK{I|L};[Y{I|L}]D[VP]{I|L}SK{I|L};{I|L}YD[VP][KT]V{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VP]{I|L}SK{I|L};[KG]{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]SK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}][H{I|L}]K{I|L} 8.4661;7.1998;5.8372;4.4309;0.53816;0.28722 +;+;-;-;-;- + 168 + NaN NaN 165576.2 NaN 10068 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13180 59.865 NaN 775020 35 0 100410 0.261 + 15272 LPAAGVGDMVM 11 74 538.7591894008003 1075.5038258684006 2 538.7595825195312 MULTI HCD FTMS 0 0 0 13176 189836.125 0.56555080949631 -13 0.312957763671875 4 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 68.08070601005525 0.017185354981652724 2 [{I|L}P]AAGVGD{M(Oxidation (M))|F}VM 11 0 + 50.518 0 0 4.6972 4.6972 87.781 0 0 0 1.8387577672328348 29.721577631129 1.8387577672328348 11.575773191777934 0 1.579689690656103 0 0.3054621874040891 0 + + [{I|L}P]AAGVGD{M(Oxidation (M))|F}VM;[{I|L}P]AQVGD{M(Oxidation (M))|F}VM;[{I|L}P]AAGVGD{[ET]|[MV]}{M(Oxidation (M))|F};[Q{I|L}][PA]VGD{M(Oxidation (M))|F}VM;[{I|L}P]AQVGD{[ET]|[MV]}{M(Oxidation (M))|F};M{I|L}[C(Carbamidomethyl (C))D][NP]T{I|L}{I|L};[Q{I|L}][PA]VGD{[ET]|[MV]}{M(Oxidation (M))|F} 4.6972;3.6209;2.5298;2.3734;1.4535;0.96301;0.20602 +;-;+;-;-;-;- + 320 NaN NaN 211843 NaN 10069 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13181 59.869 NaN 372010 35 0 22945 0.261 + 5531 FLEEREIAL 9 80 560.3061866748938 1118.5978204165874 2 560.2955322265625 MULTI HCD FTMS 0 0 0 13176 77193.359375 0.883643849160924 2 -0.055706024169921875 5 Unmodified _FLEEREIAL_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF 23.789781309258295 0.1548179064208189 2 [YV]T[YK][YV]A{I|L} 9 7 + 39.6 0 0 3.5401 3.5401 82.827 0 0 0 7.829372923381406 5.496812376923046 5.496812376923046 5.60759512171574 0 0.4247425010840047 1.6989700043360187 0 0 [YV]T[YK][YV]A{I|L};[YV]T[YK]{M(Oxidation (M))|F}VS{I|L};[YV]T[YK]T[{M(Oxidation (M))|F}V]V;[YV]T[YK]{M(Oxidation (M))|F}VTV;[YK]HTHH{I|L}A{I|L};{[QN]|[E{I|L}]|[KN]}WTHH{I|L}A{I|L};[YK]{[DS]|[MA]|[CV]|TT}{I|L}[Y{M(Oxidation (M))|F}]A{I|L};{[QN]|[E{I|L}]|[KN]}[QT]G{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}A{I|L} 3.5401;3.0388;2.7339;2.6123;1.2218;1.2218;0.78739;0.14359 -;-;-;-;-;-;-;- 1073 NaN NaN 150733.5 NaN 10070 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13182 59.872 NaN 585400 35 0 76259 0.261 + 1439 AYSAKIALF 9 68 492.28178467382827 982.5490164144566 2 492.2819519042969 MULTI HCD FTMS 0 0 0 13176 246872.953125 0.2782915861962847 -4 0.11822509765625 6 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 114.6490535036381 0.0021834323520089267 2 SAK{I|L}A{I|L}{M(Oxidation (M))|F} 7 2 69.651 0 0 7.0888 0 0 234.10016066718907 0 234.10016066718907 0 50.18700426591033 0 0 0 2.973197507588033 0 1.579689690656103 0 + SAK{I|L}A{I|L}{M(Oxidation (M))|F} 7.0888 + + 218 NaN NaN 178582.7 NaN 10071 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13183 59.875 NaN 321790 35 0 36576 0.261 + 4116 ETCRWSFIL 9 53 577.7870661247863 1153.5595793163725 2 577.7867431640625 MULTI HCD FTMS 0 0 0 13176 65514.94140625 0.27011279017699114 -4 0.11822509765625 7 Unmodified _ETCRWSFIL_ REV__ENSG00000124593|ENST00000335515|unknown;REV__ENSG00000278224|ENST00000458694|PRICKLE4;REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4;REV__nc|ENSG00000278224|Q2TBC4|PRICKLE4 10.823927491677226 0.26684000660059787 2 {I|L}{I|L} 2 -1 25.969 0 0 2.2512 0 0 909.379188655255 0 909.379188655255 0 21.365006360318688 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2512 + + 15 NaN NaN 148493.7 NaN 10072 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13184 59.878 NaN 318500 35 0 37528 0.261 -1 QYEPLFHML 9 48 597.2866431361554 1192.5587333391106 2 597.2863159179688 MULTI HCD FTMS 0 0 0 13176 54747.5390625 0.8413994586009076 3 -0.07196044921875 8 Oxidation (M) _QYEPLFHM(Oxidation (M))L_ ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD;PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant 5.230669730166228 0.3113646817964458 2 M 1 -1 5.4846 0 0 0.4599 0 0 632.1943057041482 426.30076013736567 1058.495065841514 0 0 0 0 0 0 0 0 0 M 0.4599 + + 15 + NaN NaN 154697 NaN 10073 3109 13176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13186 59.883 NaN 4204300 35 0 734400 0.327 + 5279 FFFFLFSFLFF 11 96 503.59306843662836 1507.757375910085 3 503.59326171875 MULTI HCD FTMS 0 0 0 13185 1350841.25 0.15044886587650383 14 -0.3634185791015625 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 28.233623360808718 0.2127292296419295 2 {M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 81.482 0 0 5.4042 0 0 183.08971865402265 0 183.08971865402265 0 73.52334274300942 0 0 0 2.9247425010840047 0 0.7887254899964358 0.6747425010840047 {M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4042 - 704 + NaN NaN 728705.8 NaN 10074 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13187 59.888 NaN 694490 35 0 88090 0.261 + -1 RAEQQLEEI 9 85 579.2942069928043 NaN 0 579.3079223632812 PEAK HCD FTMS 0 0 0 13185 21337.423828125 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RAEQQLEEI_ REV__ENSG00000090615|ENST00000450791|GOLGA3;REV__GOLGA3|p.K958N|1|0.21|ENSG00000090615|chr12:132786725-132786725|T/A|missense_variant;REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__nc|ENSG00000090615|Q08378-4|GOLGA3 14.838274106304384 0.2220448417561729 2 Y{I|L}SK 4 -1 21.146 0 0 1.8284 0 0 163.0391830666925 499.2417086236938 662.2808916903863 0 0 0 0 0 0 0 0.7614393726401688 0 Y{I|L}SK 1.8284 - 90 + NaN NaN 194753.5 NaN 10075 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13188 59.891 NaN 903820 35 0 83195 0.261 + 24757 RYNGGLLEF 9 89 534.7767028164883 1067.5388526997765 2 534.7765502929688 MULTI HCD FTMS 0 0 0 13185 278579.65625 1 0 0 3 Unmodified _RYNGGLLEF_ ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 36.12702656103203 0.08312389501731911 2 {I|L}E{M(Oxidation (M))|F} 3 6 40.445 0 0 3.7887 0 0 660.3346276093638 0 660.3346276093638 0 20.612431371158735 0 0 0 1.4247425010840047 0 0 0 + {I|L}E{M(Oxidation (M))|F} 3.7887 + + 275 NaN NaN 230094 NaN 10076 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13189 59.895 NaN 478790 35 0 94771 0.261 + -1 LFTMCIPCA 9 61 528.2394461257605 1054.464339318321 2 528.7555541992188 MULTI HCD FTMS 0 0 0 13185 7340.69677734375 0.10804689524026803 8 -0.2128448486328125 4 Carbamidomethyl (C) _LFTMCIPC(Carbamidomethyl (C))A_ REV__ENSG00000167333|ENST00000300747|TRIM68;REV__ENST00000532108.1_1_11:4623360-4626734:-|nuORF 8.593279151180031 0.2858735984551981 2 M{I|L}NV{I|L} 5 -1 25.573 0 0 2.4252 0 0 0 481.1400240533813 481.1400240533813 0.3836439183553608 0 0 0 0 0 0 0 0 M{I|L}NV{I|L} 2.4252 - 132 + NaN NaN 161269.2 NaN 10077 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13190 59.898 NaN 340280 35 0 19166 0.261 + 10062 IFELDLWAL 9 74 560.3061866748938 1118.5978204165874 2 560.305908203125 MULTI HCD FTMS 0 0 0 13185 61338.6796875 0.7021529761155246 3 -0.08189773559570312 5 Unmodified _IFELDLWAL_ REV__ENSG00000125965|ENST00000374369|GDF5;REV__GDF5|p.A69Gfs*25|1|0.84|ENSG00000125965|chr20:35437723-35437724|-/C|frameshift_variant 21.74664581756881 0.17247014374749275 2 [YV]T[YK][YV]A{I|L} 9 -1 + 44.371 0 0 3.9666 3.9666 87.478 0 0 0 7.850359045003046 13.010299956639809 7.850359045003046 13.789850105233295 0 0.4247425010840047 1.6989700043360187 0 0 [YV]T[YK][YV]A{I|L};[YV]T[YK]T[{M(Oxidation (M))|F}V]V;[YV]T[KT][{M(Oxidation (M))|F}V]YV;[YV]T[KT]Y[{M(Oxidation (M))|F}V]V 3.9666;2.7339;2.2669;2.1956 -;-;-;- 531 NaN NaN 134443.3 NaN 10078 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13191 59.901 NaN 155330 35 0 16983 0.264 -1 0 53 407.5377638952061 1219.5914622858184 3 407.53759765625 MULTI HCD FTMS 0 0 0 13185 31644.732421875 0.21194339899272455 9 -0.24234390258789062 6 NaN NaN 2 KY 2 -1 19.464 0 0 1.5959 0 0 0 925.4122627041845 925.4122627041845 2.4742501084004687 0 0 0 0 0 0 0 0 KY 1.5959 - 21 + NaN NaN 109924.5 NaN 10079 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13192 59.905 NaN 164310 35 0 8032.5 0.261 -1 IETHGMAVSW 10 57 573.7649578562009 1145.5153627792017 2 573.7640380859375 MULTI HCD FTMS 0 0 0 13185 24450.755859375 0.39278416326544957 13 -0.3372154235839844 7 Oxidation (M) _IETHGM(Oxidation (M))AVSW_ ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant 9.38312468134398 0.42334543440173333 2 VSW 3 -1 34.693 0 0 3.0286 0 0 755.3265332887705 0 755.3265332887705 0 19.20818753952375 0 0 0 1 0 0 0 VSW 3.0286 + + 73 + NaN NaN 120836.8 NaN 10080 3110 13185 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13194 59.91 NaN 665090 35 0 55993 0.327 + 23511 RNDVLYLQL 9 80 567.3193259461952 1132.6240989591904 2 567.3193359375 MULTI HCD FTMS 0 0 0 13193 157546.125 0.8280461204914263 1 -0.016254425048828125 1 Unmodified _RNDVLYLQL_ REV__ENSG00000162409|ENST00000371244|PRKAA2 29.081581746732265 0.1154664336125038 2 {[CT]|[{M(Oxidation (M))|F}G]}SV[RD]V{I|L}Q{I|L} 10 -1 + 46.85 0 0 4.1364 4.1364 84.997 0 0 0 7.269987279362624 13.511948583005854 7.269987279362624 9.164539485499255 0 0.7614393726401688 0 0.28872548999643577 0.3494850021680094 {[CT]|[{M(Oxidation (M))|F}G]}SV[RD]V{I|L}Q{I|L};{[CT]|[{M(Oxidation (M))|F}G]}SV[RD]V{I|L}[AG]{I|L};[YQ]V[RD]V{I|L}Q{I|L};[YQ]V[RD]V{I|L}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[QV]|[N{I|L}]|[RA]|[KV]}[PS]V{I|L}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}[KP]{I|L}Q{I|L} 4.1364;3.3273;3.3048;2.4918;2.0301;1.4867 -;-;-;-;-;- 1074 NaN NaN 212303.2 NaN 10081 3111 13193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13195 59.914 NaN 408310 35 0 116290 0.261 + 27248 SYPAKLSFI 9 48 513.2868723812329 1024.5591918292657 2 513.2867431640625 MULTI HCD FTMS 0 0 0 13193 118163.234375 0.3838042261442623 -4 0.11820602416992188 2 Unmodified _SYPAKLSFI_ L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L} 2 7 23.711 0 0 2.3143 0 0 746.3970204084 0 746.3970204084 0 9.006375246153906 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.3143 + + 9 NaN NaN 162850.5 NaN 10082 3111 13193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13196 59.918 NaN 601360 35 0 35297 0.261 + 10217 IHDIVPLPLF 10 92 582.3447276431323 1162.6749023530645 2 582.3447265625 MULTI HCD FTMS 0 0 0 13193 51734.1328125 0.010961367985658345 56 -1.5212669372558594 3 Unmodified _IHDIVPLPLF_ REV__YARS2|p.E328V|1|0.21|ENSG00000139131|chr12:32750839-32750839|T/A|missense_variant 6.723162845929126 0.4397169348982109 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY 8 -1 36.095 0 0 3.1045 0 0 0 129.17733116410582 129.17733116410582 -0.29763399396998125 0 -0.29763399396998125 0 0 0 1.3979400086720375 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY 3.1045 - 633 NaN NaN 189842.1 NaN 10083 3111 13193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13197 59.921 NaN 86093 35 0 16052 0.264 + 31297 VWFPGGAF 8 42 440.72126228054947 NaN 0 440.7210998535156 PEAK HCD FTMS 0 0 0 13193 21026.4609375 0.011417902264388748 65 -1.5909500122070312 4 Unmodified _VWFPGGAF_ ENSG00000159398|ENST00000290567|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000159398|Q6NT32-2|CES5A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A 11.114462752807354 0.38822285293237185 2 V 1 7 11.99 0 0 1.3634 0 0 186.07953520387395 591.2580091725418 777.3375443764157 0 0 0 0 0 0.5 0 0 0 + V 1.3634 + + 2 + NaN NaN 105712.6 NaN 10084 3111 13193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13199 59.926 NaN 1216400 35 0 124600 0.326 + 27092 SYMGHFDLL 9 111 549.7498633743731 1097.4851738155462 2 549.75 MULTI HCD FTMS 0 0 0 13198 604868.625 0.06582936294244764 32 -0.9012031555175781 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 88.90359156742426 0.00455469703666567 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 62.691 0 0 5.7123 5.7123 89.294 0 0 0 18.473411604194894 17.33288122256525 17.33288122256525 11.098784030439212 0 1.805462187404089 1.0969100130080565 1.035666875892183 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[{M(Oxidation (M))|F}H]|[RQ]}AV{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}C]|[YS]}D{[{M(Oxidation (M))|F}H]|[RQ]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}AC(Carbamidomethyl (C)){I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[QP]AE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.7123;4.701;4.1524;3.9521;3.6191;3.2698;2.4075;2.2896;2.2175;2.0402 +;-;-;-;-;-;-;-;-;- + 1359 NaN NaN 277566.2 NaN 10085 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13200 59.93 NaN 696390 35 0 189140 0.261 + 32020 VYPLMKEYF 9 59 603.2992016658338 1204.5838503984676 2 603.2992553710938 MULTI HCD FTMS 0 0 0 13198 359998.25 0.0896780275371423 50 -1.4276542663574219 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 70.33199760932243 0.0089807860198535 2 [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F} 9 0 + 86.393 0 0 7.172 7.172 86.969 0 0 0 16.42159058960253 16.42159058960253 16.42159058960253 2.2184874961635614 0 2.274227503252014 2 0.3807196863200844 0 + + [YV]P{I|L}{M(Oxidation (M))|F}KEY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F};VYP{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P[EP]{M(Oxidation (M))|F}{I|L}PP{M(Oxidation (M))|F} 7.172;6.9878;5.8087;5.7309;5.5551;5.4773 +;-;-;-;-;- + 369 NaN NaN 194982.8 NaN 10086 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13201 59.934 NaN 701300 35 0 57042 0.261 + 17751 MEDLIHEIY 9 89 581.7765852977916 NaN 0 581.7927856445312 PEAK HCD FTMS 0 0 0 13198 20686.693359375 0.6917334692471926 3 -0.08185577392578125 3 Unmodified _MEDLIHEIY_ ENSG00000147604|ENST00000352983|RPL7;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENST00000481157.1_1_12:65261855-65261975:-|nuORF 36.04419817259434 0.09096180745216527 2 EVE{I|L}HE{I|L} 7 4 39.602 0 0 3.4094 0 0 131.06268176199916 178.05019556217033 309.1128773241695 0 0 0 0 0 0 0 1.3807196863200843 0 EVE{I|L}HE{I|L} 3.4094 - 1113 + NaN NaN 205779.9 NaN 10087 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13202 59.937 NaN 501770 35 0 60100 0.261 + 18860 NAELWQVSW 9 81 566.7753210247591 1131.5360891163182 2 566.7748413085938 MULTI HCD FTMS 0 0 0 13198 133830.078125 0.4733807491985253 57 -1.5213203430175781 4 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 2 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW 9 6 + 47.871 0 0 4.2306 4.2306 86.997 0 0 0 0.39136227485691677 27.420752085396956 0.39136227485691677 10.872727025022996 0 2.1307196863200843 0 0.3252574989159953 0 [YR]{M(Oxidation (M))|F}{[MG]|[TS]}SVSW;[YT]{[NV]|[RG]}[YT]VSW;{[YD]|[{M(Oxidation (M))|F}M]}[HQ]VVVSW;{[CT]|[{M(Oxidation (M))|F}G]}S[HD]VVVSW;[VP]{[QS]|[NT]}{[QD]|[EN]|[WG]|[KD]|[RS]}SVSW;[YR]{[SA]|[TG]}[YT]VSW;{[{M(Oxidation (M))|F}C]|[YS]}{[QV]|[N{I|L}]|[RA]|[KV]}[YT]VSW;[YQ][HD]VVVSW;[YR]{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}S{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}SV[RD][{M(Oxidation (M))|F}T]{[CT]|[{M(Oxidation (M))|F}G]} 4.2306;3.2697;3.1974;2.8131;2.5794;2.533;2.4738;2.4225;2.1052;1.5111 -;-;-;-;-;-;-;-;-;- 635 NaN NaN 157300.3 NaN 10088 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13203 59.94 NaN 461050 35 0 57411 0.261 + 5934 FPDPAGKLNQF 11 68 617.3169656741015 1232.619378415003 2 617.31640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 49.52724829834842 0.08335959434070021 2 APDPE 5 8 47.691 0 0 3.8691 0 0 705.3847523419937 0 705.3847523419937 0 43.0866814795592 0 0 0 1.274227503252014 0 0 0 APDPE 3.8691 - 60 NaN NaN 159147 NaN 10089 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13204 59.944 NaN 571700 35 0 81241 0.261 + 23558 RPDDYLYSL 9 74 571.2794524902363 1140.5443520472725 2 571.279296875 MULTI HCD FTMS 0 0 0 13198 181437.5 0.4688682315527485 -3 0.07196044921875 6 Unmodified _RPDDYLYSL_ ENSG00000143398|ENST00000368888|PIP5K1A;ENSG00000186111|ENST00000335312|PIP5K1C;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 43.981846655682396 0.04706587046877104 2 HY{I|L}YS{I|L} 6 4 53.677 0 0 4.7063 0 0 346.15123183418126 0 346.15123183418126 0 29.240247145042062 0 0 0 1.305462187404089 0 0.4247425010840047 0 HY{I|L}YS{I|L} 4.7063 - 339 NaN NaN 173718.9 NaN 10090 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13205 59.947 NaN 245280 35 0 13496 0.261 + 4689 EYPDRIMNTF 10 48 643.297686036255 1284.5808191393098 2 643.7992553710938 MULTI HCD FTMS 0 0 0 13198 44552.125 0.024838930978941718 46 -1.3097190856933594 7 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 27.223235318498237 0.2564750587861972 2 K{[C(Carbamidomethyl (C))E]|[WC]}NT{M(Oxidation (M))|F} 6 7 29.148 0 0 2.2691 0 0 487.2296620099625 0 487.2296620099625 0 21.18948444925195 0 0 0 0.3252574989159953 0 1.4247425010840047 0.3054621874040891 K{[C(Carbamidomethyl (C))E]|[WC]}NT{M(Oxidation (M))|F} 2.2691 - 34 NaN NaN 130671.7 NaN 10091 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13206 59.95 NaN 316460 35 0 33404 0.261 + 436 ALEFGNFQEL 10 64 584.287376066614 1166.560199200028 2 584.2881469726562 MULTI HCD FTMS 0 0 0 13198 74821.7890625 0.39515652543747753 -4 0.09813690185546875 8 Unmodified _ALEFGNFQEL_ REV__ENST00000397254.2_1_X:43889279-43890164:+|nuORF 8.155526934196011 0.43213520406898465 2 E{I|L} 2 -1 25.217 0 0 2.1616 0 0 906.4222117527158 0 906.4222117527158 0 8.762874945799766 0 0 0 0.4247425010840047 0 0 0 E{I|L} 2.1616 + + 22 NaN NaN 141713.8 NaN 10092 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13207 59.954 NaN 154560 35 0 11134 0.261 -1 MPMQDIKMIL 10 46 626.3110422339213 1250.6075315346425 2 626.31396484375 MULTI HCD FTMS 0 0 0 13198 27057.9296875 0.28007436486413817 24 -0.672119140625 9 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 7.101721422024254 0.4377131641736035 2 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 31.938 0 0 2.5538 0 0 731.2973499982437 0 731.2973499982437 0 29.71971276399756 0 0 0 0 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 2.5538 + + 8 NaN NaN 114523.5 NaN 10093 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13208 59.957 NaN 168010 35 0 19702 0.263 + 14276 LCWCLVGAF 9 43 506.2431709499433 NaN 0 506.2335510253906 PEAK HCD FTMS 0 0 0 13198 14027.3828125 0.3287459170072212 -1 0.016254425048828125 10 Unmodified _LCWCLVGAF_ ENSG00000063127|ENST00000335875|SLC6A16;nc|ENSG00000063127|Q9GZN6-2|SLC6A16 9.347437153973935 0.2499504662953367 2 A 1 8 11.237 0 0 1.1121 0 0 165.080202068117 771.334876659021 936.415078727138 0 0 0 0 0 0.4247425010840047 0 0 0 + A 1.1121 + + 3 + NaN NaN 109542.8 NaN 10094 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13209 59.96 NaN 284480 35 0 14778 0.261 + 24013 RWFDKTLQF 9 83 620.8277782632083 1239.6410035932165 2 620.8255004882812 MULTI HCD FTMS 0 0 0 13198 26818.9140625 0.29550693272343076 3 -0.08185577392578125 11 Unmodified _RWFDKTLQF_ ENSG00000095321|ENST00000318080|CRAT;nc|ENSG00000095321|P43155-2|CRAT 20.41453444215458 0.18397929046831515 2 TS[{I|L}P]AD[VP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 10 8 24.86 0 0 2.0054 0 0 166.1014445480003 0 166.1014445480003 0 1.6552142918489032 0 0 0 0.6549471895720984 0 0.3807196863200844 0.7134679910804405 TS[{I|L}P]AD[VP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.0054 - 349 + NaN NaN 134211 NaN 10095 3112 13198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13211 59.965 NaN 774800 35 0 392220 0.327 -1 0 65 427.3027308391812 852.5909087451624 2 427.3026123046875 MULTI HCD FTMS 0 0 0 13210 476156.96875 0.561168653594284 -9 0.24591827392578125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5364 0 0 687.5123087469187 0 687.5123087469187 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5364 - 18 + NaN NaN 216055.7 NaN 10096 3113 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13212 59.97 NaN 279470 35 0 46074 0.261 + 5741 FPAGYMYPSM 10 56 598.2437384201628 1194.4729239071255 2 598.2428588867188 MULTI HCD FTMS 0 0 0 13210 69820.4609375 0.2393523130002766 -26 0.6681289672851562 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 54.402 0 0 4.5545 0 0 535.2420521466812 0 535.2420521466812 0 48.91777550877176 0 0 0 1.642159058960253 0 0.4247425010840047 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.5545 + + 113 NaN NaN 131955.4 NaN 10097 3113 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13213 59.973 NaN 165530 35 0 26615 0.264 + 12668 KWFFQKLRF 9 50 433.91680466671517 1298.7285846003456 3 433.91693115234375 MULTI HCD FTMS 0 0 0 13210 63890.71484375 0.07697951828096261 67 -1.6100044250488281 3 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 13.614867670302875 0.2427269026982664 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}] 9 2 + 37.642 0 0 2.8984 2.8984 80.85 0 0 0 16.47817481888638 1.7609125905568135 1.7609125905568135 1.7609125905568135 0 0.6549471895720985 0 0 0 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F}[R{I|L}];KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QKR{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.8984;2.7628 -;- 61 + NaN NaN 115690.3 NaN 10098 3113 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13214 59.977 NaN 258150 35 0 17425 0.261 + 4690 EYPDRIMNTF 10 57 643.297686036255 1284.5808191393098 2 643.7993774414062 MULTI HCD FTMS 0 0 0 13210 48607.58203125 0.027099950341930187 47 -1.3359718322753906 4 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 28.494509381512117 0.24525010509582015 2 NT{M(Oxidation (M))|F} 3 7 30.164 0 0 2.3481 0 0 904.4116688459 0 904.4116688459 0 16.97621246364342 0 0 0 0.8252574989159953 0 0.5 0 + NT{M(Oxidation (M))|F} 2.3481 + + 43 NaN NaN 136791.7 NaN 10099 3113 13210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13216 59.981 NaN 1810100 35 0 114260 0.327 + 13178 KYLSVQGQLF 10 108 591.8296046129591 1181.644656292718 2 591.8297729492188 MULTI HCD FTMS 0 0 0 13215 1143419.25 0.16710169517533766 12 -0.33160400390625 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 136.39213081522345 6.942186105618134E-06 2 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 88.457 0 0 7.4859 7.4859 88.221 0 0 0 3.8967387005160816 16.53212513775344 3.8967387005160816 3.8967387005160816 0 2.2302046884880937 1.2218487496163564 1.2786596949921218 1.1976212463643423 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}D[KA]GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YD[KA]GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KD[KA]G[AG]{I|L}{M(Oxidation (M))|F} 7.4859;7.1561;6.8124;6.7633;6.7103;6.4826;6.3806;6.2721;6.0898;6.0368 -;+;-;-;-;-;-;-;-;- + 6345 NaN NaN 362187 NaN 10100 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13217 59.986 NaN 1106100 35 0 142810 0.261 + 5812 FPAYERVVL 9 84 547.3059548371131 1092.597356741026 2 547.3059692382812 MULTI HCD FTMS 0 0 0 13215 306242.15625 0.7364924206224963 -1 0.016239166259765625 2 Unmodified _FPAYERVVL_ ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1 45.739877483867886 0.03899552410870734 2 {M(Oxidation (M))|F}PAYERVV{I|L} 9 0 + 47.4 0 0 4.3383 4.3383 82.086 0 0 0 1.62794683835358 1.62794683835358 1.62794683835358 1.62794683835358 0 2.028659694992122 0 0 0 + + {M(Oxidation (M))|F}PAYERVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERVV{I|L};{M(Oxidation (M))|F}PAYREVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F}ERVV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[RE]|[WV]}V{M(Oxidation (M))|F}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[RE]|[WV]}{M(Oxidation (M))|F}VV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[RE]|[WV]}VV{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PA{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KKD{I|L} 4.3383;4.1893;4.0015;3.525;2.8583;2.6552;2.285;1.3749 +;+;-;-;-;-;-;- + 407 + NaN NaN 264952.8 NaN 10101 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13218 59.989 NaN 1001000 35 0 235590 0.261 + 16602 LVPNFTFNL 9 80 532.7908118131539 1063.5670706931078 2 533.3086547851562 MULTI HCD FTMS 0 0 0 13215 10925.0556640625 0.2901678291961008 -3 0.07196044921875 3 Unmodified _LVPNFTFNL_ ENSG00000166507|ENST00000309979|NDST2;ENST00000463410.1_1_10:75566827-75567228:-|nuORF;nc|ENSG00000166507|P52849-2|NDST2 23.1484247019978 0.1603590852062899 2 N{M(Oxidation (M))|F}T{I|L} 4 5 27.805 0 0 2.6143 0 0 570.3121815412125 0 570.3121815412125 0 5.576512587389644 0 0 0 0.4247425010840047 0 0.25 0.2614393726401688 N{M(Oxidation (M))|F}T{I|L} 2.6143 - 607 NaN NaN 239521.6 NaN 10102 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13219 59.993 NaN 535330 35 0 79931 0.261 + 32945 YAIREEIVL 9 68 553.3162092160621 1104.6178654989242 2 553.3164672851562 MULTI HCD FTMS 0 0 0 13215 263057.3125 0.5705953111568157 4 -0.11470794677734375 4 Unmodified _YAIREEIVL_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 38.175570920033316 0.07371992880350783 2 [YT]KT[HM]{I|L}V 8 6 37.466 0 0 3.3917 0 0 0 128.07125867729192 128.07125867729192 22.3155344645977 0 0 0 0 0.8807196863200843 1.6989700043360187 0.3252574989159953 0 [YT]KT[HM]{I|L}V 3.3917 - 374 NaN NaN 171419.3 NaN 10103 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13220 59.996 NaN 242150 35 0 17867 0.261 -1 VWMRSPLSTF 10 65 620.313166769071 1238.611780604942 2 620.3130493164062 MULTI HCD FTMS 0 0 0 13215 32534.185546875 0.3013412273655377 1 -0.026149749755859375 5 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ ENST00000558985.5_1_15:60656692-60690187:-|nuORF;ENST00000559725.5_1_15:60656692-60682421:-|nuORF 34.221707139014875 0.19555013683537745 2 ST{M(Oxidation (M))|F} 3 -1 34.425 0 0 2.7793 0 0 885.4540997289885 0 885.4540997289885 0 12.74227503252014 0 0 0 0.9247425010840047 0 0.5 0 ST{M(Oxidation (M))|F} 2.7793 + + 140 NaN NaN 138501 NaN 10104 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13221 59.999 NaN 282890 35 0 25238 0.261 + 26717 SYDHVELTF 9 65 555.7586572860854 1109.5027616389707 2 555.7589111328125 MULTI HCD FTMS 0 0 0 13215 85183.6171875 0.47667345627965463 3 -0.08847808837890625 6 Unmodified _SYDHVELTF_ ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2 21.74664581756881 0.17247014374749275 2 [Y{I|L}]M[YC(Carbamidomethyl (C))]{I|L}T 7 6 43.701 0 0 3.9388 0 0 0 162.0572804878672 162.0572804878672 22.7321943351906 0 0 0 0 1 1.5228787452803376 0.4247425010840047 0 [Y{I|L}]M[YC(Carbamidomethyl (C))]{I|L}T 3.9388 - 111 NaN NaN 137090 NaN 10105 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13222 60.003 NaN 250790 35 0 14703 0.261 + 35943 YYTVRNFTL 9 67 588.8064271818203 1175.5983014304404 2 588.806396484375 MULTI HCD FTMS 0 0 0 13215 51821.0703125 0.29436825360477126 5 -0.14420700073242188 7 Unmodified _YYTVRNFTL_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 34.93206674587334 0.08860942999206235 2 YYT 3 6 36.254 0 0 3.0839 0 0 0 745.3983248346311 745.3983248346311 20.324609153403514 0 0 0 0 0.4247425010840047 2 0.3054621874040891 0 + YYT 3.0839 + + 43 + NaN NaN 131450.8 NaN 10106 3114 13215 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13224 60.008 NaN 1369100 35 0 195120 0.327 + 1440 AYSAKIALF 9 78 492.28178467382827 982.5490164144566 2 492.28179931640625 MULTI HCD FTMS 0 0 0 13223 882811.5625 0.9951638157629606 2 -0.062328338623046875 1 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 126.56589448801843 0.0008132384440316759 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 9 0 + 105.41 0 0 10.728 10.728 98.287 0 0 0 24.13734275855269 80.61849288843574 24.13734275855269 31.989700043360187 0 3.048455006504028 1.6989700043360187 1.8882104921644451 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AAK{I|L}A{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}KAA{I|L}A{I|L}{M(Oxidation (M))|F};[{I|L}A][K{I|L}]{[SA]|[TG]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{I|L}A][K{I|L}]{[SA]|[TG]}{M(Oxidation (M))|F}YA 10.728;7.4722;3.8965;2.9074;1.7365 +;-;-;-;- + 612 NaN NaN 298347.3 NaN 10107 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13225 60.012 NaN 690880 35 0 113730 0.261 + -1 MPTVVGYFM 9 64 538.7417555961963 NaN 0 538.759521484375 PEAK HCD FTMS 0 0 0 13223 7794.01806640625 0.9696538595228754 -1 0.026149749755859375 2 2 Oxidation (M) _M(Oxidation (M))PTVVGYFM(Oxidation (M))_ REV__ENSG00000148136|ENST00000277216|OR13C4 8.593279151180031 0.2536050107310812 2 V{M(Oxidation (M))|F}DGVGA 7 -1 26.433 0 0 2.4578 0 0 149.01750966828928 278.15036951236567 427.16787918065495 0 0 0 0 0 0 0 0.3252574989159953 0 V{M(Oxidation (M))|F}DGVGA 2.4578 - 238 + NaN NaN 205541.8 NaN 10108 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13226 60.016 NaN 555310 35 0 43836 0.261 + 13211 KYLVLANML 9 68 540.8096009654428 1079.6046489976854 2 540.81005859375 MULTI HCD FTMS 0 0 0 13223 224107.890625 0.870714519392816 -20 0.4928779602050781 3 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 71.92227651296345 0.008466197542043549 2 [YK]{I|L}V{I|L}AN{M(Oxidation (M))|F}{I|L} 9 0 + 69.927 0 0 6.4771 6.4771 89.349 0 0 0 3.65279269351241 55.233871898888154 3.65279269351241 9.208187539523749 0 2.2302046884880937 0 0 0 + + [YK]{I|L}V{I|L}AN{M(Oxidation (M))|F}{I|L};[YK]{I|L}V{I|L}AGG{M(Oxidation (M))|F}{I|L};[YK]{I|L}V{I|L}A[MD]K 6.4771;5.6241;3.9085 +;-;- + 239 NaN NaN 176493.6 NaN 10109 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13227 60.019 NaN 189670 35 0 23694 0.261 + 16777 LYDPVISKL 9 52 524.3081643731598 1046.6017758131195 2 524.3082275390625 MULTI HCD FTMS 0 0 0 13223 63263.1953125 0.18458687788094696 9 -0.23913192749023438 4 Unmodified _LYDPVISKL_ ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-3|MCRS1 37.07464296494664 0.07877380486334713 2 [Y{I|L}]D[VP]{I|L}SK{I|L} 9 0 + 62.062 0 0 5.9298 5.9298 90.761 0 0 0 7.1400125535309655 42.764706236572465 7.1400125535309655 15.91251590079672 0 1.6989700043360187 2 0 0 + + [Y{I|L}]D[VP]{I|L}SK{I|L};{I|L}YD[VP][KT]V{I|L} 5.9298;4.4094 +;- + 46 NaN NaN 125742.1 NaN 10110 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13228 60.022 NaN 129470 35 0 26369 0.263 + 10271 IKEQKGVKGLF 11 37 416.2565997571634 NaN 0 416.2490234375 PEAK HCD FTMS 0 0 0 13223 7097.9765625 0.6417453272488591 -3 0.08185577392578125 5 Unmodified _IKEQKGVKGLF_ REV__tr|U7SGR2|U7SGR2_FUSNUXaa-ProaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02289PE=3SV=1 1.1097533296519684 0.33897209286470975 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98629.3 NaN 10111 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13229 60.026 NaN 93913 35 0 10613 0.261 -1 0 51 467.1018454743315 NaN 0 467.10205078125 PEAK HCD FTMS 0 0 0 13223 40608.59375 0.5261505817679344 -8 0.21631622314453125 6 NaN NaN 2 APV 3 -1 9.6927 0 0 1.0398 0 0 131.81604302985858 530.1922701471311 662.0083131769898 0 0 0 0 0 0 0 0 0 APV 1.0398 - 10 + NaN NaN 113073.6 NaN 10112 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13230 60.029 NaN 160770 35 0 14181 0.261 + -1 CLCRSRGALQ 10 48 407.5377638952061 1219.5914622858184 3 407.5382995605469 MULTI HCD FTMS 0 0 0 13223 9333.90234375 0.06251463789382605 13 -0.3644447326660156 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LC(Carbamidomethyl (C))RSRGALQ_ REV__nc|ENSG00000120875|Q13115-2|DUSP4 6.1918466704503565 0.44252927588099017 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2697 0 0 1054.5123892651136 0 1054.5123892651136 0 0.7918124604762511 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2697 - 16 + NaN NaN 106227.5 NaN 10113 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13231 60.032 NaN 252180 35 0 11896 0.261 + 16371 LSENEKFF 8 76 507.25120824093204 1012.4878635486641 2 508.25244140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LSENEKFF_ REV__ENSG00000115423|ENST00000389394|DNAH6;REV__ENST00000476689.5_1_2:84775422-84811380:+|nuORF;REV__nc|ENSG00000115423|Q9C0G6-3|DNAH6;REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 10.183394434864962 0.5188676124868831 2 {[TV]|[{I|L}S]}[RK][QA]S{I|L} 8 -1 24.927 0 0 2.4619 0 0 0 125.95367942708971 125.95367942708971 6.844471979274186 0 0 0 0 0 1.3979400086720375 0.7302046884880937 0 {[TV]|[{I|L}S]}[RK][QA]S{I|L} 2.4619 - 92 NaN NaN 130192.9 NaN 10114 3115 13223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13233 60.037 NaN 3155100 35 0 541250 0.327 + 5280 FFFFLFSFLFF 11 94 503.59306843662836 1507.757375910085 3 503.5931701660156 MULTI HCD FTMS 0 0 0 13232 805288 0.08968830815905127 20 -0.5607643127441406 1 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 22.774965066868997 0.25864339442684914 2 T{M(Oxidation (M))|F}TRN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 89.171 0 0 5.9142 0 0 463.2172108380875 0 463.2172108380875 0 73.17991336716257 0 0 0 2.774227503252014 0 1.6549471895720984 0 T{M(Oxidation (M))|F}TRN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9142 - 2077 NaN NaN 563818 NaN 10115 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13234 60.042 NaN 580540 35 0 121710 0.261 + 27368 SYSMIVNNL 9 65 528.7552263044756 1055.4958996757512 2 528.7553100585938 MULTI HCD FTMS 0 0 0 13232 281176.34375 0.7246146496512643 -7 0.18331527709960938 2 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 106.94017166704063 0.003441928997083001 2 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 77.744 0 0 7.3656 7.3656 89.155 0 0 0 4.137342758552691 63.76464070433734 4.137342758552691 6.817496819840656 0 2.6549471895720984 0 1.055462187404089 0.3807196863200844 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}[KC]N{I|L};[YT]{I|L}V{[QN]|[E{I|L}]|[KN]}DG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}[KC]{I|L}N;[YT]{I|L}V{[QN]|[E{I|L}]|[KN]}S[MT] 7.3656;6.7197;6.4932;6.4932;5.8473;5.2643;2.0333;1.5789;1.3874;1.0605 +;-;-;-;-;-;-;-;-;- + 350 NaN NaN 174230.3 NaN 10116 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13235 60.045 NaN 552010 35 0 47760 0.261 + 13318 KYMDVQFDF 9 68 604.7681496085214 1207.5217462838427 2 604.7682495117188 MULTI HCD FTMS 0 0 0 13232 243013.046875 0.054590002652976616 -25 0.6337318420410156 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 2 S{I|L}{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 4 59.045 0 0 4.8898 0 0 79.9747018434826 0 79.9747018434826 0 26.786537451613697 0 0 0 0.3494850021680094 0 1.394599018282542 0 S{I|L}{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8898 - 1101 + NaN NaN 165630.2 NaN 10117 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13236 60.048 NaN 552100 35 0 121890 0.261 -1 HPWMQDVLL 9 70 577.7870661247863 1153.5595793163725 2 577.7874145507812 MULTI HCD FTMS 0 0 0 13232 214528.40625 0.8844832207830158 3 -0.08855819702148438 4 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 22.736283301280096 0.1639198954644489 2 V{I|L}{I|L} 3 -1 31.198 0 0 2.7045 0 0 810.3138294904312 0 810.3138294904312 0 27.21848749616356 0 0 0 0.5 0 0 0 V{I|L}{I|L} 2.7045 + + 17 NaN NaN 176674.1 NaN 10118 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13237 60.052 NaN 530340 35 0 62390 0.261 -1 NDAVEEMVCV 10 80 562.7333877701649 1123.4522226071297 2 562.7337036132812 MULTI HCD FTMS 0 0 0 13232 234762.453125 0.3818699135002763 -3 0.07188796997070312 5 Oxidation (M) _NDAVEEM(Oxidation (M))VCV_ ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12;TTC12-LUC7L2|1|fusion 29.84058131909904 0.23356904650364865 2 NAVDEE{I|L}{I|L} 8 -1 89.964 0 0 8.0078 0 0 0 237.0004061334594 237.0004061334594 82.97380531505331 0 0 0 0 2.6989700043360187 1.5228787452803376 0.7134679910804405 0 NAVDEE{I|L}{I|L} 8.0078 - 301 + NaN NaN 166898.5 NaN 10119 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13238 60.055 NaN 286060 35 0 10854 0.261 -1 HLESEWCLI 9 59 593.7822116879686 1185.549870442737 2 594.2803344726562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _HLESEWC(Carbamidomethyl (C))LI_ ENST00000439384.5_3_7:29186332-29186525:+|nuORF 11.640296217721598 0.25978676193971967 2 {I|L}{I|L} 2 -1 24.776 0 0 2.0899 0 0 941.3687553501845 0 941.3687553501845 0 11.281446971601312 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 2.0899 + + 60 NaN NaN 140098 NaN 10120 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13239 60.058 NaN 348420 35 0 12011 0.261 + 24050 RWSPVRPLVF 10 63 628.8667834641215 1255.7190139950428 2 629.3682250976562 MULTI HCD FTMS 0 0 0 13232 52017.9296875 0.2792446067665293 -3 0.07188796997070312 7 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 35.079672537005266 0.18810481106627508 2 RWS 3 7 27.536 0 0 2.1928 0 0 0 823.4832103024243 823.4832103024243 12.412581433031843 0 0 0 0 0.8494850021680094 0 0 0 + RWS 2.1928 + + 105 + NaN NaN 158522.9 NaN 10121 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13240 60.062 NaN 179900 35 0 21110 0.264 + 20951 PLEDQTQL 8 52 472.2403844687086 942.4662160042172 2 472.2403259277344 MULTI HCD FTMS 0 0 0 13232 44361.90234375 0.11714481294248118 10 -0.2759552001953125 8 Unmodified _PLEDQTQL_ ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18288394-18288718:+|nuORF;IFI30|p.L222F|1|0.42|ENSG00000216490|chr19:18177738-18177738|C/T|missense_variant 26.88365393820708 0.39599352634412927 2 Y{M(Oxidation (M))|F} 2 8 30.217 0 0 3.2061 0 0 614.3239258204267 0 614.3239258204267 0 2.0951501454263166 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F} 3.2061 - 57 + NaN NaN 124916.8 NaN 10122 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13241 60.065 NaN 82906 35 0 14991 0.261 + 27947 TESYKETL 8 36 485.74014803698117 969.4657431407624 2 485.7403869628906 MULTI HCD FTMS 0 0 0 13232 7330.88330078125 0.008963885260847206 26 -0.7341232299804688 9 Unmodified _TESYKETL_ ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-2|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-5|RBM10 15.847184025352803 0.47719562709667024 2 ET{I|L} 3 5 36.198 0 0 3.7338 0 0 608.2803165046929 0 608.2803165046929 0 36.197887582883936 0 0 0 1 0 0 0 + ET{I|L} 3.7338 + + 14 NaN NaN 104781.1 NaN 10123 3116 13232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13243 60.07 NaN 1129000 35 0 127350 0.327 + 27093 SYMGHFDLL 9 100 549.7498633743731 1097.4851738155462 2 549.75 MULTI HCD FTMS 0 0 0 13242 639430.4375 0.06959081130491035 37 -1.0389862060546875 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 51.352 0 0 4.679 4.679 88.021 0 0 0 7.262036441594191 35.04075503321209 7.262036441594191 12.42992819099939 0 1.7134679910804405 0 1.0114393726401687 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}VE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}VE{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]S{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]{I|L}YS;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]{I|L}SY;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YR]{M(Oxidation (M))|F}YS 4.679;3.5465;3.0222;2.8719;2.5728;1.8525;1.4609;1.399;1.343;0.89218 +;-;-;-;-;-;-;-;-;- + 1501 NaN NaN 280232.5 NaN 10124 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13244 60.074 NaN 752520 35 0 67966 0.261 + 13319 KYMDVQFDF 9 70 604.7681496085214 1207.5217462838427 2 604.7684326171875 MULTI HCD FTMS 0 0 0 13242 205494.171875 0.046161831770282324 -24 0.60748291015625 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 53.40400417844725 0.026808823219830042 2 S{I|L}{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 4 59.104 0 0 4.8946 0 0 79.97525601579339 0 79.97525601579339 0 27.821975242986735 0 0 0 0.3494850021680094 0 1.0994850021680094 0 S{I|L}{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8946 - 1013 + NaN NaN 204425 NaN 10125 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13245 60.078 NaN 586530 35 0 172230 0.262 + 2966 DYVVQAAFL 9 52 513.2679234280639 1024.5212939229277 2 513.2868041992188 MULTI HCD FTMS 0 0 0 13242 10535.9736328125 1 0 0 3 Unmodified _DYVVQAAFL_ REV__ITPR2|p.R2517Q|1|0.24|ENSG00000123104|chr12:26399022-26399022|C/T|missense_variant 5.230669730166228 0.3113646817964458 2 M{M(Oxidation (M))|F} 2 -1 36.454 0 0 3.5581 0 0 0 743.3744600885374 743.3744600885374 25.996075289514096 0 0 0 0 0 1.6989700043360187 0 0 M{M(Oxidation (M))|F} 3.5581 - 12 + NaN NaN 179821.8 NaN 10126 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13246 60.081 NaN 938400 35 0 138950 0.261 + 11593 IYTFPHASF 9 90 541.7689349227988 1081.5233169123976 2 541.7691650390625 MULTI HCD FTMS 0 0 0 13242 293102.28125 0.4070657244230937 -5 0.14418411254882812 4 Unmodified _IYTFPHASF_ ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 149.9946105101851 8.83195450578534E-06 2 {I|L}YT{M(Oxidation (M))|F}PHAS{M(Oxidation (M))|F} 9 0 + 96.522 0 0 8.9246 8.9246 98.241 0 0 0 75.52505690161058 14.09256854528806 14.09256854528806 65.88681010661719 0 2.176935982160881 1.6989700043360187 1.0752574989159953 0 + + {I|L}YT{M(Oxidation (M))|F}PHAS{M(Oxidation (M))|F};[Y{I|L}]T[W{I|L}]W[NS];[Y{I|L}]K[RD][C(Carbamidomethyl (C))D]{I|L};{I|L}[QA]ET{[WT]|[RM]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KC]RHAS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}A{I|L}V[C(Carbamidomethyl (C))D]{I|L};[YT]Q[KG]V[C(Carbamidomethyl (C))N]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}{M(Oxidation (M))|F}T[Y{I|L}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]{I|L}V[C(Carbamidomethyl (C))D]{I|L} 8.9246;2.8326;2.6486;1.7237;1.6099;1.455;0.7309;0.63809;0.42119;0.12693 +;-;-;-;-;-;-;-;-;- + 1293 + NaN NaN 226409.9 NaN 10127 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13247 60.085 NaN 993370 35 0 447190 0.263 + 24052 RWSPVRPLVF 10 55 419.58028146478347 1255.7190149945504 3 419.5802001953125 MULTI HCD FTMS 0 0 0 13242 168510.53125 0.3857745234458558 -2 0.062328338623046875 5 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 10.315234532428624 0.4146267933501748 2 R[{I|L}P]V{M(Oxidation (M))|F} 5 5 37.218 0 0 2.9639 0 0 625.3342626525567 0 625.3342626525567 0 36.249387366083 0 0 0 1.5 0 0 0 + R[{I|L}P]V{M(Oxidation (M))|F} 2.9639 + + 14 + NaN NaN 243004.8 NaN 10128 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13248 60.088 NaN 290940 35 0 12891 0.261 -1 APFKFDMEL 9 74 557.2678650960022 1112.5211772588043 2 557.268798828125 MULTI HCD FTMS 0 0 0 13242 45901.88671875 0.0751448697010413 31 -0.8718032836914062 6 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 15.248480904072842 0.22861284681709862 2 YYDVA[KQ]{I|L} 8 -1 31.604 0 0 2.8408 0 0 0 129.00445685953358 129.00445685953358 10.63486257521106 0 0 0 0 0 2 0 0 YYDVA[KQ]{I|L} 2.8408 - 324 NaN NaN 131996.9 NaN 10129 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13249 60.091 NaN 297160 35 0 13056 0.261 + 25693 SIPDELVIK 9 83 507.2975203205124 1012.5804877078248 2 508.3111267089844 MULTI HCD FTMS 0 0 0 13242 23443.33203125 0.7933405844249407 -3 0.08847808837890625 7 Unmodified _SIPDELVIK_ AK9|p.M1006Vfs*17|1|0.26|ENSG00000155085|chr6:109546075-109546076|AT/-|frameshift_variant;ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-2|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9 17.11289562659939 0.2125047172822487 2 {[TV]|[{I|L}S]}[KQ]{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L} 8 5 31.26 0 0 3.0871 0 0 0 126.04522425504742 126.04522425504742 12.67606240177031 0 0 0 0 0 1.3979400086720375 0.7614393726401688 0 {[TV]|[{I|L}S]}[KQ]{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L} 3.0871 - 168 NaN NaN 131117.5 NaN 10130 3117 13242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13251 60.096 NaN 4867900 35 0 390360 0.327 + 34714 YPVEIHEYL 9 117 581.7925293330666 1161.570505732933 2 581.7927856445312 MULTI HCD FTMS 0 0 0 13250 3415489.25 1 0 0 1 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 225.63253280303684 3.884279688775432E-24 2 YPVE{I|L}HEY{I|L} 9 0 + 117.92 0 0 10.151 10.151 92.391 0 0 0 6.635855047290775 6.635855047290775 6.635855047290775 6.635855047290775 0 3.2302046884880937 1.6989700043360187 2.1791746928241125 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};YP{I|L}D{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;[VP]YE{I|L}HEY{I|L};YPYH{I|L}E{I|L}D{I|L};YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};[VP]YE{I|L}HYE{I|L};[VP]YE{I|L}HE{I|L}Y 10.151;9.5802;8.9264;8.8555;8.8268;8.7029;8.6233;8.5249;8.5029;8.1022 +;+;-;-;-;-;-;-;-;- + 19746 + NaN NaN 758379.6 NaN 10131 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13252 60.101 NaN 647550 35 0 173590 0.261 + 32021 VYPLMKEYF 9 57 603.2992016658338 1204.5838503984676 2 603.2994384765625 MULTI HCD FTMS 0 0 0 13250 349771.78125 0.08713054419195874 56 -1.3900337219238281 2 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 47.748688679222035 0.03472022231463587 2 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F} 10 3 + 61.488 0 0 5.1045 5.1045 85.449 0 0 0 24.00855686070713 43.300303788948256 24.00855686070713 7.218035200300008 0 1.742992819099939 1.6989700043360187 0.7614393726401688 0 [YV]P{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}VY{M(Oxidation (M))|F};[YV]{[SA]|[TG]}[{I|L}P]{M(Oxidation (M))|F}VY{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.1045;4.5053;3.3558;2.14 -;-;-;- 142 NaN NaN 185355.9 NaN 10132 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13253 60.104 NaN 443540 35 0 46829 0.261 + 23559 RPDDYLYSL 9 81 571.2794524902363 1140.5443520472725 2 571.2789916992188 MULTI HCD FTMS 0 0 0 13250 163954.109375 0.42368789979173077 3 -0.08530426025390625 3 Unmodified _RPDDYLYSL_ ENSG00000143398|ENST00000368888|PIP5K1A;ENSG00000186111|ENST00000335312|PIP5K1C;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 26.268140514670165 0.13340543277302316 2 {I|L}YS{I|L} 4 5 44.68 0 0 3.9175 0 0 646.26957900215 0 646.26957900215 0 22.004412890910956 0 0 0 1 0 0.4247425010840047 0 + {I|L}YS{I|L} 3.9175 + + 203 NaN NaN 155455.4 NaN 10133 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13254 60.108 NaN 603040 35 0 110720 0.261 + 5935 FPDPAGKLNQF 11 83 617.3169656741015 1232.619378415003 2 617.3165893554688 MULTI HCD FTMS 0 0 0 13250 247016.3125 0.6474315317157842 -1 0.0262298583984375 4 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 40.23920728925047 0.13540949088500095 2 D[PA][KP]Y{I|L}GE 9 7 40.869 0 0 3.3156 0 0 244.12120253730626 0 244.12120253730626 0 32.769790682657245 0 0 0 2.079689690656103 0 0 0.3494850021680094 D[PA][KP]Y{I|L}GE 3.3156 - 80 NaN NaN 187682.4 NaN 10134 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13255 60.111 NaN 649120 35 0 60094 0.261 + 2641 DVEIIFNER 9 100 567.793177966345 1133.5718029994898 2 568.3125610351562 MULTI HCD FTMS 0 0 0 13250 7727.3583984375 0.18234142930079816 3 -0.08530426025390625 5 Unmodified _DVEIIFNER_ ENSG00000078328|ENST00000550418|RBFOX1;ENSG00000100320|ENST00000695854|RBFOX2;ENSG00000167281|ENST00000693108|RBFOX3;ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000167281|A6NFN3|RBFOX3 14.405379775768559 0.2358970535022398 2 VPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 8 51.807 0 0 4.5703 0 0 62.95740989518283 0 62.95740989518283 0 13.749690573898633 0 0 0 0.28872548999643577 0 0.5 0 VPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 4.5703 - 1956 + NaN NaN 198209 NaN 10135 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13256 60.114 NaN 314020 35 0 41909 0.261 + 24296 RYFPDLDEL 9 65 584.287376066614 1166.560199200028 2 584.28759765625 MULTI HCD FTMS 0 0 0 13250 170921.265625 0.9026869618331799 2 -0.055751800537109375 6 Unmodified _RYFPDLDEL_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 9.38312468134398 0.279288223203164 2 E{I|L} 2 -1 25.217 0 0 2.1616 0 0 906.4225652137951 0 906.4225652137951 0 13.622731327798547 0 0 0 0.4247425010840047 0 0 0 E{I|L} 2.1616 + + 40 NaN NaN 149595.2 NaN 10136 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13257 60.117 NaN 238930 35 0 15485 0.261 + 26117 SPLEDIVLQ 9 70 507.2811588201895 NaN 0 507.2976379394531 PEAK HCD FTMS 0 0 0 13250 6097.4150390625 0.9077164474724825 -1 0.0262298583984375 7 Unmodified _SPLEDIVLQ_ ENST00000368849.7_1_1:151554198-151554447:+|nuORF 16.942295170755138 0.2079222001251384 2 PVD{I|L}EV 6 6 17.344 0 0 1.7129 0 0 101.01603460857741 256.16672693424067 357.18276154281807 0 0 0 0 0 0 0 0 0 PVD{I|L}EV 1.7129 - 165 + NaN NaN 135077.3 NaN 10137 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13258 60.121 NaN 677090 35 0 167680 0.261 + 24761 RYNPRILFQL 10 56 440.59095309258294 1318.751029877949 3 440.5908508300781 MULTI HCD FTMS 0 0 0 13250 142512.984375 0.5011715465997619 -4 0.11470794677734375 8 Unmodified _RYNPRILFQL_ ENSG00000164961|ENST00000318410|WASHC5 19.625955294349634 0.3275374527965692 2 {I|L}{M(Oxidation (M))|F}Q{I|L} 4 6 43.686 0 0 3.3127 0 0 799.4430801248042 0 799.4430801248042 0 28.20107520596089 0 0 0 1.3252574989159953 0 0 0 + {I|L}{M(Oxidation (M))|F}Q{I|L} 3.3127 + + 49 NaN NaN 184422.4 NaN 10138 3118 13250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13260 60.126 NaN 1147500 35 0 71794 0.326 + 13179 KYLSVQGQLF 10 102 591.8296046129591 1181.644656292718 2 591.8295288085938 MULTI HCD FTMS 0 0 0 13259 644639.9375 0.09420903691622623 17 -0.47220611572265625 1 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 103.82355648334675 5.879419037132958E-05 2 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 84.169 0 0 7.1231 7.1231 88.049 0 0 0 5.311442249793629 16.53212513775344 5.311442249793629 5.311442249793629 0 2.305462187404089 1.154901959985743 0.6694451763165201 1.1936726795685342 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]SK{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS[QA]{[NV]|[RG]}{I|L}{M(Oxidation (M))|F};[YK]{I|L}S[QA]{[NV]|[RG]}{I|L}{M(Oxidation (M))|F} 7.1231;6.6736;6.4571;6.3475;5.898;5.7971;5.6815;5.0215;4.7499;4.3004 -;+;-;-;-;-;-;-;-;- + 2127 NaN NaN 271777.5 NaN 10139 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13261 60.13 NaN 1324800 35 0 702340 0.264 -1 0 63 427.3027308391812 852.5909087451624 2 427.3026123046875 MULTI HCD FTMS 0 0 0 13259 735729.9375 0.8670850276952535 -3 0.08855819702148438 2 NaN NaN 2 Y{I|L}S 3 -1 7.8483 0 0 0.92052 0 0 323.2673746648874 163.12388025455314 486.3912549194406 0 0 0 0 0 0 0 0.3807196863200844 0 Y{I|L}S 0.92052 - 27 + NaN NaN 285833.7 NaN 10140 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13262 60.134 NaN 413030 35 0 43451 0.261 + 24723 RYLVEVEEL 9 78 575.3111091592506 1148.607665385301 2 575.3108520507812 MULTI HCD FTMS 0 0 0 13259 181941.125 0.5127323200481476 -2 0.055728912353515625 3 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 53.40400417844725 0.026808823219830042 2 VEVEE{I|L} 6 3 66.063 0 0 5.7516 0 0 432.24778945136876 0 432.24778945136876 0 51.11432819416656 0 0 0 2.1549471895720984 0 0.2742275032520141 0 + VEVEE{I|L} 5.7516 + + 373 NaN NaN 169353.5 NaN 10141 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13263 60.137 NaN 255090 35 0 44267 0.261 + 2755 DYAEVSNTF 9 56 523.2272531995338 1044.4399534658676 2 523.2273559570312 MULTI HCD FTMS 0 0 0 13259 124570.5390625 0.9971844989343059 -2 0.055728912353515625 4 Unmodified _DYAEVSNTF_ ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant 76.82478488871298 0.006879825292024087 2 {[YD]|[{M(Oxidation (M))|F}M]}AEVSNT{M(Oxidation (M))|F} 9 0 + 70.258 0 0 6.7268 6.7268 93.208 0 0 0 9.621892823592972 39.337294113476204 9.621892823592972 26.505149978319906 0 1.9177353201839438 2 0.4247425010840047 0 + + {[YD]|[{M(Oxidation (M))|F}M]}AEVSNT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SEVSNT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AE[KA][WY];{[{M(Oxidation (M))|F}C]|[YS]}[QA]VEAM{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[KA]E[WY];{[{M(Oxidation (M))|F}C]|[YS]}[QA][W{I|L}]M{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SE[KA][WY] 6.7268;4.1891;2.9294;2.834;2.1417;1.8328;0.39164 +;-;-;-;-;-;- + 231 NaN NaN 146579.5 NaN 10142 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13264 60.14 NaN 258420 35 0 12040 0.261 + 35389 YYDVAKQLL 9 66 556.8031118362243 1111.5916707392485 2 556.8036499023438 MULTI HCD FTMS 0 0 0 13259 70081.421875 0.800193214823484 1 -0.02625274658203125 5 Unmodified _YYDVAKQLL_ ANKRD11|p.T278Hfs*71|1|0.25|ENSG00000167522|chr16:89286099-89286100|-/G|frameshift_variant;ENSG00000167522|ENST00000301030|ANKRD11;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF 41.95555342248728 0.056367691549927025 2 YYDVAKQ{I|L}{I|L} 9 0 + 74.619 0 0 6.7128 6.7128 89.746 0 0 0 23.75594527664356 61.12404479047257 23.75594527664356 9.208187539523749 0 1.9247425010840047 2 0 0 + + YYDVAKQ{I|L}{I|L};YYDVAK[AG]{I|L}{I|L};YYDVA[Q{I|L}]K{I|L};YY[VS]{[QV]|[N{I|L}]|[RA]|[KV]}Q{I|L}{I|L};YYVV{[QS]|[NT]}Q{I|L}{I|L};YY[NP][{I|L}T]TK{I|L};YY[NP][{I|L}T]{I|L}[KT] 6.7128;5.8844;5.062;3.8538;3.3122;3.1487;1.2021 +;-;-;-;-;-;- + 137 NaN NaN 127282.4 NaN 10143 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13265 60.144 NaN 381090 35 0 43187 0.261 + 5742 FPAGYMYPSM 10 74 598.2437384201628 1194.4729239071255 2 598.2439575195312 MULTI HCD FTMS 0 0 0 13259 106539.890625 0.36523060583511685 -20 0.5066871643066406 6 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 2 + 52.519 0 0 4.3968 4.3968 87.801 0 0 0 4.471668508262212 43.05516236474446 4.471668508262212 12.870404535280372 0 1.6989700043360187 1.3979400086720375 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F} 4.3968;3.3193;3.2339;3.1561 -;-;-;- 230 NaN NaN 148209.3 NaN 10144 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13266 60.147 NaN 95191 35 0 8531.5 0.263 -1 0 53 467.1018454743315 NaN 0 467.10198974609375 PEAK HCD FTMS 0 0 0 13259 41827.4453125 0.5419427922208789 -4 0.1180572509765625 7 NaN NaN 2 A 1 -1 6.9897 0 0 0.74982 0 0 131.81423631840204 726.3148657908664 858.1291021092684 0 0 0 0 0 0 0 0 0 A 0.74982 - 6 + NaN NaN 92057.3 NaN 10145 3119 13259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13268 60.152 NaN 784160 35 0 149140 0.327 + 23988 RVSDINFTL 9 92 532.7908118131539 1063.5670706931078 2 533.3087158203125 MULTI HCD FTMS 0 0 0 13267 12110.46875 0.3216522218091843 2 -0.04909515380859375 1 Unmodified _RVSDINFTL_ ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3 19.361941925380144 0.1930734562688509 2 {I|L}{I|L}[HC]{[SA]|[TG]}{I|L}PV 9 9 24.75 0 0 2.327 0 0 0 127.03689163297555 127.03689163297555 6.077476436625258 0 0 0 0 0.28872548999643577 1.2218487496163564 0.7302046884880937 0 {I|L}{I|L}[HC]{[SA]|[TG]}{I|L}PV 2.327 - 347 NaN NaN 203473.9 NaN 10146 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13269 60.156 NaN 600520 35 0 66963 0.261 + 1441 AYSAKIALF 9 64 492.28178467382827 982.5490164144566 2 492.2818298339844 MULTI HCD FTMS 0 0 0 13267 269651.25 0.30396879501139523 7 -0.18729019165039062 2 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 103.35351024395868 0.004027461563756449 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 9 0 + 93.005 0 0 9.4657 9.4657 99.061 0 0 0 24.13734275855269 76.55123765425856 24.13734275855269 93.0048878493794 0 3.024227503252014 1.6989700043360187 1.274227503252014 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK{I|L}A{I|L}{M(Oxidation (M))|F} 9.4657 + + 245 NaN NaN 177788.8 NaN 10147 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13270 60.16 NaN 686830 35 0 78018 0.261 + 15273 LPAAGVGDMVM 11 78 538.7591894008003 1075.5038258684006 2 538.7597045898438 MULTI HCD FTMS 0 0 0 13267 321725.40625 0.9584691214078284 -2 0.055751800537109375 3 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 78.7280429016045 0.006868779721450025 2 AGVGD{M(Oxidation (M))|F}VM 8 3 73.714 0 0 6.8539 0 0 281.17305190254064 0 281.17305190254064 0 44.28965350852792 0 0 0 2.841129063296272 0 0.6109243748081782 0 + AGVGD{M(Oxidation (M))|F}VM 6.8539 + + 488 NaN NaN 203534.5 NaN 10148 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13271 60.163 NaN 220370 35 0 18066 0.261 + 33012 YAYDGKDYLAL 11 51 646.3142155588312 1290.6138781844622 2 646.3143310546875 MULTI HCD FTMS 0 0 0 13267 82623.90625 0.8574428132150096 1 -0.029552459716796875 4 Unmodified _YAYDGKDYLAL_ ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G 23.80106514851385 0.24970295077337615 2 DYC{I|L} 4 8 37.735 0 0 2.9238 0 0 778.42094618965 0 778.42094618965 0 26.49797211252192 0 0 0 0.8807196863200843 0 0 0 DYC{I|L} 2.9238 - 28 NaN NaN 141256 NaN 10149 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13272 60.167 NaN 269550 35 0 28160 0.261 + 20362 NYSYLHCEW 9 67 607.7497219644296 1213.484890995659 2 607.7507934570312 MULTI HCD FTMS 0 0 0 13267 64295.5703125 0.6988051971782981 -1 0.02625274658203125 5 Unmodified _NYSYLHCEW_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 39.957323273324995 0.06554068735427583 2 [YN]S 3 6 38.2 0 0 3.1479 0 0 0 846.3246423512626 846.3246423512626 18.595756168365014 0 0 0 0 0.4247425010840047 2 0.3494850021680094 0 + [YN]S 3.1479 + + 53 + NaN NaN 132653.2 NaN 10150 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13273 60.17 NaN 197510 35 0 26132 0.264 + 12669 KWFFQKLRF 9 63 433.91680466671517 1298.7285846003456 3 433.916748046875 MULTI HCD FTMS 0 0 0 13267 63038.28125 0.07595245311861681 74 -1.6805839538574219 6 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 17.44264345198275 0.2096557692338702 2 KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 9 0 + 43.153 0 0 3.3227 3.3227 89.307 0 0 0 28.548888535387178 11.24175720442146 11.24175720442146 43.15298230514905 0 0.6989700043360187 0 0 0 + + KW{M(Oxidation (M))|F}{M(Oxidation (M))|F}QK{I|L}R{M(Oxidation (M))|F} 3.3227 + + 32 + NaN NaN 110414 NaN 10151 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13274 60.173 NaN 225790 35 0 16624 0.261 + 4691 EYPDRIMNTF 10 54 643.297686036255 1284.5808191393098 2 643.2974853515625 MULTI HCD FTMS 0 0 0 13267 65214.4765625 0.024304157357032577 55 -1.3410682678222656 7 Unmodified _EYPDRIMNTF_ ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 47.594388314883695 0.08653821083322558 2 N[{M(Oxidation (M))|F}T] 3 7 18.429 0 0 1.4346 0 0 904.4127721195817 0 904.4127721195817 0 10.469837217489516 0 0 0 0.805462187404089 0 0.3807196863200844 0 + N[{M(Oxidation (M))|F}T] 1.4346 + + 19 + NaN NaN 132460.5 NaN 10152 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13275 60.177 NaN 123840 35 0 13032 0.261 + -1 STCWRCCCCC 10 49 612.6831633567776 NaN 0 612.6822509765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _STC(Carbamidomethyl (C))WRCCCCC_ REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF 0.35063188157827746 0.339884196735365 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.32529 0 0 796.1774577984671 277.0839022272094 1073.2613600256766 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.32529 - 1 + NaN NaN 114614 NaN 10153 3120 13267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13277 60.181 NaN 2170800 35 0 330590 0.327 + -1 VLWTLCFYLFF 11 107 503.59306843662836 1507.757375910085 3 503.5931091308594 MULTI HCD FTMS 0 0 0 13276 613843.9375 0.06836637852304443 25 -0.7044906616210938 1 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 18.721224879955976 0.29396376558286563 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]T{M(Oxidation (M))|F}TRN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 12 -1 + 88.993 0 0 5.9023 5.9023 87.477 0 0 0 2.1400125535309655 74.05754736817734 2.1400125535309655 9.098233696509112 0 2.6989700043360187 1.0969100130080565 1.6237125054200234 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]T{M(Oxidation (M))|F}TRN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]T{M(Oxidation (M))|F}TRGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]T{M(Oxidation (M))|F}T{I|L}[RN]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QT]Y[VS]RN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9023;5.2989;4.3589;3.9286 -;-;-;- 2690 NaN NaN 410386.5 NaN 10154 3121 13276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13278 60.186 NaN 892580 35 0 190850 0.261 + 27369 SYSMIVNNL 9 83 528.7552263044756 1055.4958996757512 2 528.755126953125 MULTI HCD FTMS 0 0 0 13276 338440.8125 0.8721899129445407 -2 0.055805206298828125 2 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 129.77232118876745 0.0006187813247758304 2 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 69.067 0 0 6.5436 6.5436 85.144 0 0 0 0.562368612587548 0.562368612587548 0.562368612587548 0.562368612587548 0 2.6549471895720984 0 1.066901560044258 0.28872548999643577 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VQVN;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VN{I|L}GG;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}V[AG]VN;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGG{I|L}GG;{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L} 6.5436;6.4903;5.6712;5.6712;5.6258;5.6179;5.6078;4.7534;4.7396;4.5294 +;-;-;-;-;-;-;-;-;- + 425 NaN NaN 224154.9 NaN 10155 3121 13276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13279 60.189 NaN 157470 35 0 22463 0.261 + 32946 YAIREEIVL 9 39 553.3162092160621 1104.6178654989242 2 553.817626953125 MULTI HCD FTMS 0 0 0 13276 43506.33203125 0.14463109997031962 10 -0.2859344482421875 3 Unmodified _YAIREEIVL_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 6.723162845929126 0.3000504726104499 2 V{I|L} 2 7 25.969 0 0 2.351 0 0 874.4548050720582 0 874.4548050720582 0 22.870156338638594 0 0 0 0.5 0 0 0 + V{I|L} 2.351 + + 10 NaN NaN 131026.7 NaN 10156 3121 13276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13280 60.193 NaN 193360 35 0 21471 0.261 + 1630 AYYPAQGVQQF 11 45 636.3065617036168 1270.5985704740335 2 636.306640625 MULTI HCD FTMS 0 0 0 13276 70285.2578125 1 0 0 4 Unmodified _AYYPAQGVQQF_ EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 31.26834338654808 0.19318467762437158 2 [NP]W[PA]QRQ 8 7 35.495 0 0 2.7935 0 0 0 290.11326013736567 290.11326013736567 35.49471895720984 0 0 0 0 1.8494850021680094 0 0 0 [NP]W[PA]QRQ 2.7935 - 187 + NaN NaN 141101.3 NaN 10157 3121 13276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13281 60.196 NaN 70540 35 0 9817.2 0.264 + 1692 CFYYYFYF 8 48 405.83480667411965 1214.482590622559 3 405.83489990234375 MULTI HCD FTMS 0 0 0 13276 20112.3671875 0.5687703805300907 2 -0.039066314697265625 5 Unmodified _CFYYYFYF_ ENST00000557252.1_1_12:56743718-56743955:-|nuORF 1.844237919475145 0.5392561982033289 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.2025 0 0 1049.4038380364245 0 1049.4038380364245 0 1.8398839264729716 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2025 + + 24 + NaN NaN 92316.4 NaN 10158 3121 13276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13283 60.201 NaN 1250600 35 0 137020 0.327 + 27094 SYMGHFDLL 9 103 549.7498597197784 1097.4851665063568 2 549.7500610351562 MULTI HCD FTMS 0 0 0 13282 689401.3125 0.08187986895682822 -21 0.5467338562011719 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 88.90359156742426 0.00455469703666567 2 SY{M(Oxidation (M))|F} 3 6 46.708 0 0 4.2559 0 0 0 697.3316619337141 697.3316619337141 9.713403050078782 0 0 0 0 0.75 2 0 0 + SY{M(Oxidation (M))|F} 4.2559 + + 686 + NaN NaN 287815 NaN 10159 3122 13282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13284 60.205 NaN 698500 35 0 84906 0.261 -1 NDAVEEMVCV 10 89 562.7333877701649 1123.4522226071297 2 562.7337036132812 MULTI HCD FTMS 0 0 0 13282 469322.125 0.7634099784350508 3 -0.07568740844726562 2 Oxidation (M) _NDAVEEM(Oxidation (M))VCV_ ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12;TTC12-LUC7L2|1|fusion 36.506200033944 0.17572556831573002 2 NAVDEE{I|L}{I|L} 8 -1 94.851 0 0 8.4428 0 0 0 237.0009707086547 237.0009707086547 79.67408464563985 0 0 0 0 2.6861818737241734 1.5228787452803376 1.089136830878453 0 NAVDEE{I|L}{I|L} 8.4428 - 484 + NaN NaN 204274.2 NaN 10160 3122 13282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13285 60.209 NaN 384440 35 0 17235 0.261 + 24051 RWSPVRPLVF 10 61 628.8667834641215 1255.7190139950428 2 629.368408203125 MULTI HCD FTMS 0 0 0 13282 121158.2265625 0.6504061491148783 3 -0.07568740844726562 3 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 35.079672537005266 0.18810481106627508 2 RWS 3 7 25.846 0 0 2.0583 0 0 0 823.484429131492 823.484429131492 14.16386562212267 0 0 0 0 0.805462187404089 0 0 0 + RWS 2.0583 + + 106 + NaN NaN 151301.6 NaN 10161 3122 13282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13286 60.212 NaN 182770 35 0 13333 0.262 -1 0 56 516.3013490867068 515.2940726201067 1 516.300048828125 MULTI HCD FTMS 0 0 0 13282 36056.19921875 0.14754535110964478 -21 0.5467338562011719 4 NaN NaN 2 G{M(Oxidation (M))|F} 2 -1 19.464 0 0 3.7773 0 0 293.19374410623794 0 293.19374410623794 0 12.474250108400469 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 3.7773 - 6 + NaN NaN 132013.8 NaN 10162 3122 13282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13287 60.216 NaN 60898 35 0 5894.7 0.261 + 13684 KYPENFFLLR 10 40 442.9117913695318 NaN 0 442.91162109375 PEAK HCD FTMS 0 0 0 13282 8529.2431640625 0.3203799464513864 1 -0.01952362060546875 5 Unmodified _KYPENFFLLR_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 6.234356020891411 0.33484854433550354 2 {M(Oxidation (M))|F}{I|L} 2 8 10.969 0 0 1.2411 0 0 336.4608790004224 284.1726473443969 620.6335263448193 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L} 1.2411 + + 5 + NaN NaN 91165.1 NaN 10163 3122 13282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13289 60.221 NaN 1066800 35 0 175680 0.327 + 11594 IYTFPHASF 9 85 541.7689349227988 1081.5233169123976 2 541.7691040039062 MULTI HCD FTMS 0 0 0 13288 444601.46875 0.6174705232059335 1 -0.026203155517578125 1 Unmodified _IYTFPHASF_ ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 149.9946105101851 8.83195450578534E-06 2 {I|L}YT{M(Oxidation (M))|F}PHAS{M(Oxidation (M))|F} 9 0 + 106.87 0 0 9.8812 9.8812 99.274 0 0 0 84.22516107030688 16.478174818886373 16.478174818886373 79.01372037547105 0 2.193672679568534 2 1.314909327626439 0 + + {I|L}YT{M(Oxidation (M))|F}PHAS{M(Oxidation (M))|F};[Y{I|L}]K[RD][C(Carbamidomethyl (C))D]{I|L};{I|L}[QA]ET{[WT]|[RM]}S{M(Oxidation (M))|F};[YK]{[QS]|[NT]}{[VA]|[{I|L}G]}C(Carbamidomethyl (C))N{I|L} 9.8812;2.5754;1.8375;0.053712 +;-;-;- + 1264 + NaN NaN 250898.9 NaN 10164 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13290 60.225 NaN 738280 35 0 327420 0.263 + 24053 RWSPVRPLVF 10 50 419.58028146478347 1255.7190149945504 3 419.5802917480469 MULTI HCD FTMS 0 0 0 13288 198404.09375 0.4542104528918761 4 -0.11867141723632812 2 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 7.477065608646677 0.43572640772348226 2 V[TP][{I|L}P]V{M(Oxidation (M))|F} 7 5 31.739 0 0 2.5275 0 0 484.2452564923844 0 484.2452564923844 0 27.134475811582632 0 0 0 1.4247425010840047 0 0 0 V[TP][{I|L}P]V{M(Oxidation (M))|F} 2.5275 - 30 NaN NaN 200285.8 NaN 10165 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13291 60.229 NaN 596580 35 0 80323 0.261 + 3295 EEFGRFASF 9 68 545.2537909370494 1088.4930289408987 2 545.2539672851562 MULTI HCD FTMS 0 0 0 13288 250100.59375 0.47884711989984635 -3 0.0686187744140625 3 Unmodified _EEFGRFASF_ ENSG00000204287|ENST00000395388|HLA-DRA 96.36657018975838 0.004359138328518304 2 EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}AS{M(Oxidation (M))|F} 9 0 + 79.619 0 0 7.3146 7.3146 93.309 0 0 0 44.80635835899527 16.478174818886373 16.478174818886373 16.50560227418346 0 1.5228787452803376 0 1.579689690656103 0 + + EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}AS{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};EEW[VG][HV]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV][YN][WH];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV][VG]WEE 7.3146;5.7983;2.9711;1.7181;1.4836 +;-;-;-;- + 623 + NaN NaN 177277.4 NaN 10166 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13292 60.232 NaN 322570 35 0 28715 0.261 + 15334 LPAVPSDPIL 10 58 511.29993413349575 1020.5853153337915 2 511.78521728515625 MULTI HCD FTMS 0 0 0 13288 8860.2392578125 0.02231489504600985 21 -0.6064186096191406 4 Unmodified _LPAVPSDPIL_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;PTPRZ1-TSPAN33|2|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 21.74664581756881 0.3077012291670537 2 DP{I|L}{I|L} 4 6 16.555 0 0 1.6221 0 0 564.3266921421884 0 564.3266921421884 0 3.9916623986031396 0 0 0 0.27422750325201406 0 0 0 + DP{I|L}{I|L} 1.6221 + + 33 + NaN NaN 135907.6 NaN 10167 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13293 60.235 NaN 254290 35 0 19290 0.261 + 34133 YNWTTAAPLLL 11 65 631.8404276423997 1261.6663023515994 2 631.8401489257812 MULTI HCD FTMS 0 0 0 13288 27993.759765625 0.3777232787912438 1 -0.026203155517578125 5 Unmodified _YNWTTAAPLLL_ ENSG00000134324|ENST00000674199|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693|LPIN1 10.150570793230772 0.3686401556411756 2 [YN]AW[{I|L}V][VG]D{I|L}{I|L} 11 7 + 42.26 0 0 3.3495 3.3495 89.283 0 0 0 21.95696657446529 34.31472953675087 21.95696657446529 42.26004213047485 0 0.5 1.6989700043360187 0 0.6861818737241735 [YN]AW[{I|L}V][VG]D{I|L}{I|L} 3.3495 - 148 NaN NaN 129727.5 NaN 10168 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13294 60.239 NaN 201900 35 0 26573 0.262 -1 0 53 516.3013490867068 515.2940726201067 1 516.2982788085938 MULTI HCD FTMS 0 0 0 13288 21204.794921875 0.08677201090926645 -20 0.5240592956542969 6 NaN NaN 2 G{M(Oxidation (M))|F} 2 -1 16.454 0 0 3.1931 0 0 293.1944154929567 0 293.1944154929567 0 12.016675202793719 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 3.1931 - 6 + NaN NaN 116955.1 NaN 10169 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13295 60.242 NaN 134280 35 0 14852 0.261 + 21351 PTFYTETL 8 66 486.2407531738281 NaN 0 486.2407531738281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _PTFYTETL_ REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF 8.593279151180031 0.38822285293237185 2 E 1 -1 9.732 0 0 1.0028 0 0 609.2826121076188 229.11971460513908 838.4023267127578 0 0 0 0 0 0 0 0.4247425010840047 0 E 1.0028 + + 18 + NaN NaN 106718.5 NaN 10170 3123 13288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13297 60.247 NaN 1716500 35 0 163450 0.327 + 34715 YPVEIHEYL 9 95 581.7925293330666 1161.570505732933 2 581.792724609375 MULTI HCD FTMS 0 0 0 13296 1058156.5 0.30981110539288037 6 -0.18780136108398438 1 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 187.92953380467262 5.336922440765807E-13 2 YPVE{I|L}HEY{I|L} 9 0 + 119.44 0 0 10.283 10.283 96.288 0 0 0 42.23320034371433 11.39506772603255 11.39506772603255 13.741961303643237 0 3.274227503252014 1.6989700043360187 2.111407999752478 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};[VP]YE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;[VP]YE{I|L}HYE{I|L};YPYH{I|L}E{I|L}D{I|L};YPYH{I|L}EVE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};[VP]YE{I|L}HE{I|L}Y;[VP]EY{I|L}HEY{I|L} 10.283;9.0996;8.5823;8.3183;8.2439;8.1512;8.0716;8.0299;7.801;7.7411 +;+;-;-;-;-;-;-;-;- + 6183 + NaN NaN 346534.5 NaN 10171 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13298 60.251 NaN 1100800 35 0 102630 0.261 + 34460 YPEVRIVLM 9 106 568.3125290308486 1134.6105051284972 2 568.3128051757812 MULTI HCD FTMS 0 0 0 13296 445455.9375 0.7100201341700206 -3 0.06526947021484375 2 Oxidation (M) _YPEVRIVLM(Oxidation (M))_ ENSG00000135829|ENST00000367549|DHX9 96.36657018975838 0.004359138328518304 2 YPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 107.22 0 0 9.45 9.45 97.315 0 0 0 67.84903859726029 16.478174818886373 16.478174818886373 27.69388983764651 0 2.7856668758921828 1.3979400086720375 0.8252574989159953 0 + + YPEVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}VPY;{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}V[VG]{I|L}V{I|L}{M(Oxidation (M))|F};[EP]YVR{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]R{I|L}V{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}VR{I|L}VPY;{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]R{I|L}V{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}V[VG]{I|L}VPY;[EP]VYR{I|L}V{I|L}{M(Oxidation (M))|F} 9.45;7.0092;5.9486;5.3721;5.333;5.2677;5.1231;4.3617;4.3115;4.2065 +;+;-;-;-;-;-;-;-;- + 1627 + NaN NaN 256554.2 NaN 10172 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13299 60.255 NaN 652820 35 0 176430 0.261 + 32022 VYPLMKEYF 9 60 603.2992016658338 1204.5838503984676 2 603.2992553710938 MULTI HCD FTMS 0 0 0 13296 278223.84375 0.06930746335934154 62 -1.4710540771484375 3 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 43.77239144664712 0.04802738721622131 2 VYP{I|L} 4 5 59.285 0 0 4.9216 0 0 0 729.2912081354124 729.2912081354124 28.086681479559203 0 0 0 0 1.1861818737241734 2 0 0 + VYP{I|L} 4.9216 + + 56 + NaN NaN 196830.8 NaN 10173 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13300 60.258 NaN 771710 35 0 83976 0.261 + 4572 EYLLKVNEI 9 89 560.8164621290739 1119.6183713249477 2 560.8163452148438 MULTI HCD FTMS 0 0 0 13296 264653.375 0.7847600154822444 1 -0.02996063232421875 4 Unmodified _EYLLKVNEI_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 106.94017166704063 0.003441928997083001 2 [YE]{I|L}{I|L}KVNE{I|L} 9 0 + 69.297 0 0 6.1893 6.1893 91.011 0 0 0 26.74140759098306 13.278821274043054 13.278821274043054 15.075156255085389 0 1.1496498648046138 1.6989700043360187 0.805462187404089 1.0114393726401687 + + [YE]{I|L}{I|L}KVNE{I|L};[YE]{I|L}{I|L}KVGGE{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}Q[WR]{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}[AG][WR]{I|L};[YV][KQ]Q[WR]{I|L};[YE][KA][VG]{I|L}{I|L}D{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}Y{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}VK{I|L}{[QN]|[E{I|L}]|[KN]}Y{I|L} 6.1893;4.8429;3.4281;2.6009;1.8206;1.484;1.1386;0.71215 +;-;-;-;-;-;-;- + 1284 + NaN NaN 202260.8 NaN 10174 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13301 60.265 NaN 759080 35 0 66871 0.261 + 13320 KYMDVQFDF 9 76 604.7681496085214 1207.5217462838427 2 604.768310546875 MULTI HCD FTMS 0 0 0 13296 335456.3125 0.07535628734679538 -17 0.4554481506347656 5 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 75.5705956163825 0.007285660612518157 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 68.962 0 0 5.711 5.711 84.052 0 0 0 1.2814469716013122 3.7932569876205235 1.2814469716013122 1.2814469716013122 0 2.2302046884880937 0 0.25 0.6747425010840047 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YT]YQP{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YT]Y[AG]P{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QTAA{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE]{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 5.711;5.6049;5.2891;4.9485;4.5265;4.4604;4.2957;4.2872;4.2611;4.2507 +;-;-;-;-;-;-;-;-;- + 2964 NaN NaN 204316.1 NaN 10175 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13302 60.269 NaN 317630 35 0 22247 0.261 -1 YNAPTDHGLCI 11 65 630.7876819042086 1259.5608108752172 2 631.289794921875 MULTI HCD FTMS 0 0 0 13296 86258.1640625 0.7795490128588701 -2 0.045726776123046875 6 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 2 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYYH 9 -1 72.655 0 0 5.7683 0 0 0 128.07424122856165 128.07424122856165 57.17084689121528 0 0 0 0 2.75 1.6989700043360187 0.4247425010840047 0.805462187404089 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYYH 5.7683 - 165 NaN NaN 130755.3 NaN 10176 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13303 60.272 NaN 160480 35 0 10154 0.261 -1 PAHPCLLPSTF 11 59 620.313166769071 1238.611780604942 2 620.3126831054688 MULTI HCD FTMS 0 0 0 13296 63592.7109375 0.5890144548969284 11 -0.3250389099121094 7 Carbamidomethyl (C) _PAHPC(Carbamidomethyl (C))LLPSTF_ ENST00000489469.5_1_21:35757936-35772344:+|nuORF 27.628801355627647 0.21662447369784368 2 ST{M(Oxidation (M))|F} 3 -1 37.92 0 0 3.0615 0 0 885.4540882794937 0 885.4540882794937 0 25.268024924119672 0 0 0 0.9247425010840047 0 0.8494850021680094 0 ST{M(Oxidation (M))|F} 3.0615 + + 110 NaN NaN 121755.8 NaN 10177 3124 13296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13305 60.277 NaN 898810 35 0 478230 0.327 -1 0 53 427.3027308391812 852.5909087451624 2 427.30267333984375 MULTI HCD FTMS 0 0 0 13304 474011.875 0.5586405810246835 3 -0.0953521728515625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.5828 0 0 687.5119883123484 0 687.5119883123484 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5828 - 27 + NaN NaN 211734.9 NaN 10178 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13306 60.281 NaN 755140 35 0 49663 0.261 + 13180 KYLSVQGQLF 10 84 591.8296046129591 1181.644656292718 2 591.8296508789062 MULTI HCD FTMS 0 0 0 13304 436321.9375 0.06376500605393666 23 -0.6650390625 2 Unmodified _KYLSVQGQLF_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 81.9152076656658 0.003466872489127602 2 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F} 10 2 + 84.132 0 0 7.1199 7.1199 89.241 0 0 0 8.174100046527357 16.532125137753425 8.174100046527357 8.174100046527357 0 2.1643943297944483 1.2218487496163564 1.0356668758921828 0.7059771852360797 [Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L}{M(Oxidation (M))|F};[YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KAA[TA]GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YS{[QV]|[N{I|L}]|[RA]|[KV]}G[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]KS{[QV]|[N{I|L}]|[RA]|[KV]}GAAV{M(Oxidation (M))|F};[YK]{I|L}AA[TA]GQ{I|L}{M(Oxidation (M))|F};[K{I|L}]YAA[TA]GQ{I|L}{M(Oxidation (M))|F} 7.1199;6.4282;6.3444;6.1529;5.6526;5.4754;5.3773;4.8612;4.7836;4.5084 -;+;-;-;-;-;-;-;-;- + 1738 NaN NaN 207636.8 NaN 10179 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13307 60.285 NaN 588940 35 0 67043 0.261 + 24724 RYLVEVEEL 9 75 575.3111091592506 1148.607665385301 2 575.3115234375 MULTI HCD FTMS 0 0 0 13304 256105.84375 0.721737559025349 4 -0.13159561157226562 3 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 79.59630418116434 0.005983006570063981 2 VEVEE{I|L} 6 3 70.508 0 0 6.1386 0 0 432.24800307441564 0 432.24800307441564 0 41.45696888266805 0 0 0 2.1989700043360187 0 0.6747425010840047 0 + VEVEE{I|L} 6.1386 + + 1193 NaN NaN 176081.9 NaN 10180 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13308 60.288 NaN 534780 35 0 128300 0.263 + 24762 RYNPRILFQL 10 42 440.59095309258294 1318.751029877949 3 440.5908508300781 MULTI HCD FTMS 0 0 0 13304 153140.875 0.5385463612875858 3 -0.0953521728515625 4 Unmodified _RYNPRILFQL_ ENSG00000164961|ENST00000318410|WASHC5 20.580933911654288 0.31860490502175054 2 V{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L} 6 7 43.633 0 0 3.3087 0 0 625.4027765593927 0 625.4027765593927 0 26.64320017660792 0 0 0 1.5 0 0 0.9247425010840047 V{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L} 3.3087 - 82 + NaN NaN 178754.8 NaN 10181 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13309 60.292 NaN 484640 35 0 79582 0.261 + 5936 FPDPAGKLNQF 11 80 617.3169656741015 1232.619378415003 2 617.3167114257812 MULTI HCD FTMS 0 0 0 13304 186429.328125 0.4886326098998554 6 -0.190704345703125 5 Unmodified _FPDPAGKLNQF_ ENSG00000033011|ENST00000262374|ALG1;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1 15.738622578938676 0.31995127722034494 2 MDPE 4 9 27.155 0 0 2.203 0 0 742.4205799787125 0 742.4205799787125 0 8.399028321079953 0 0 0 0.4247425010840047 0 0 0 MDPE 2.203 - 43 NaN NaN 165504.8 NaN 10182 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13310 60.295 NaN 414330 35 0 63149 0.263 -1 0 59 492.2557060064337 491.2484295398337 1 492.2558288574219 MULTI HCD FTMS 0 0 0 13304 129422.8984375 0.6406069763040712 -2 0.056163787841796875 6 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 20.29 0 0 4.1304 0 0 0 167.0942296709462 167.0942296709462 3.836805933051153 0 0 0 0 0 1.5228787452803376 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 4.1304 - 17 NaN NaN 164190.8 NaN 10183 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13311 60.298 NaN 249050 35 0 26660 0.261 + 2756 DYAEVSNTF 9 59 523.2272531995338 1044.4399534658676 2 523.2272338867188 MULTI HCD FTMS 0 0 0 13304 59685.4921875 0.4777810874750915 4 -0.13159561157226562 7 Unmodified _DYAEVSNTF_ ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant 41.95555342248728 0.056367691549927025 2 {[YD]|[{M(Oxidation (M))|F}M]}AEVS{[QS]|[NT]}{M(Oxidation (M))|F} 9 0 + 46.366 0 0 4.4393 4.4393 88.503 0 0 0 4.053783369835315 26.13212724799766 4.053783369835315 16.02059991327962 0 1.305462187404089 1.3010299956639813 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}AEVS{[QS]|[NT]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}SEVS{[QS]|[NT]}{M(Oxidation (M))|F};[WM]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[KS]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}KEE{[QS]|[NT]}{M(Oxidation (M))|F} 4.4393;2.9054;2.0574;1.8344 +;-;-;- + 234 NaN NaN 129829 NaN 10184 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13312 60.302 NaN 412510 35 0 27517 0.261 -1 YNAPTDHGLCI 11 61 630.7876819042086 1259.5608108752172 2 630.7867431640625 MULTI HCD FTMS 0 0 0 13304 71486.59375 0.34892556378901113 -2 0.056163787841796875 8 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 2 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 71.916 0 0 5.7096 0 0 0 265.13010584049067 265.13010584049067 52.452359395051715 0 0 0 0 2.579689690656103 2 0.8494850021680094 0 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYY 5.7096 - 142 + NaN NaN 148899.3 NaN 10185 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13313 60.305 NaN 271200 35 0 29976 0.261 -1 SETKGIWMW 9 58 577.2724561285404 1152.5303593238807 2 577.7869873046875 MULTI HCD FTMS 0 0 0 13304 20884.7421875 0.6130933446415249 1 -0.0363616943359375 9 Oxidation (M) _SETKGIWM(Oxidation (M))W_ ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 26.268140514670165 0.13340543277302316 2 {I|L}W{M(Oxidation (M))|F}W 4 -1 34.747 0 0 3.0148 0 0 502.23253066230626 0 502.23253066230626 0 19.17353812100867 0 0 0 1.305462187404089 0 0 0 {I|L}W{M(Oxidation (M))|F}W 3.0148 + + 81 NaN NaN 135056 NaN 10186 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13314 60.308 NaN 139430 35 0 10608 0.261 + -1 MMCKRALLE 9 54 584.287376066614 1166.560199200028 2 584.2886352539062 MULTI HCD FTMS 0 0 0 13304 39477.31640625 0.20849166239073685 9 -0.2656707763671875 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))MC(Carbamidomethyl (C))KRALLE_ REV__ENSG00000150627|ENST00000508596|WDR17;REV__nc|ENSG00000150627|Q8IZU2|WDR17 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F}[VP]E{I|L} 5 -1 25.713 0 0 2.2042 0 0 563.2706776349625 0 563.2706776349625 0 21.53212513775344 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}[VP]E{I|L} 2.2042 - 16 NaN NaN 112732.3 NaN 10187 3125 13304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13316 60.313 NaN 739660 35 0 99304 0.327 + 15274 LPAAGVGDMVM 11 85 538.7591894008003 1075.5038258684006 2 538.7596435546875 MULTI HCD FTMS 0 0 0 13315 261764.25 0.7798356792454253 4 -0.12147903442382812 1 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 99.79894945604345 0.019041132516778112 2 AGVGDMV{M(Oxidation (M))|F} 8 3 80.136 0 0 7.451 0 0 281.17381484199376 0 281.17381484199376 0 49.188747361843 0 0 0 3.3556270500406935 0 0.3494850021680094 0 + AGVGDMV{M(Oxidation (M))|F} 7.451 + + 1751 NaN NaN 206410 NaN 10188 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13317 60.317 NaN 614770 35 0 75079 0.261 -1 LIEIMLCTI 9 69 532.7908118131539 1063.5670706931078 2 533.30859375 MULTI HCD FTMS 0 0 0 13315 8714.33203125 0.23145134323842786 5 -0.1543426513671875 2 Oxidation (M) _LIEIM(Oxidation (M))LCTI_ ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant 15.847184025352803 0.2234401846867398 2 [DV]QG[QP][{I|L}P]V 9 -1 41.62 0 0 3.9133 0 0 0 127.0364648462104 127.0364648462104 25.919008989464274 0 0 0 0 0 2 1.4291746928241125 0.6747425010840047 [DV]QG[QP][{I|L}P]V 3.9133 - 80 NaN NaN 184089.5 NaN 10189 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13318 60.321 NaN 381630 35 0 55437 0.261 + 1442 AYSAKIALF 9 65 492.28178467382827 982.5490164144566 2 492.2815856933594 MULTI HCD FTMS 0 0 0 13315 101045.0234375 0.11390466024613298 13 -0.3797874450683594 3 Unmodified _AYSAKIALF_ ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF 61.357469665136826 0.01568246967499496 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK[{I|L}A]{I|L}{M(Oxidation (M))|F} 9 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} + + 35.226 18.952 8.0958 3.5852 3.5852 60.537 0 0 0 0 28.236541693866428 0 0 0 1.1989700043360187 0 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SAK[{I|L}A]{I|L}{M(Oxidation (M))|F} 3.5852 + + 63 + NaN NaN 150992 NaN 10190 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13319 60.324 NaN 437430 35 0 62585 0.261 + 5743 FPAGYMYPSM 10 66 598.2437384201628 1194.4729239071255 2 598.2437744140625 MULTI HCD FTMS 0 0 0 13315 108699.109375 0.37263264808958857 -13 0.3478431701660156 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 64.23631603340823 0.02601519761747251 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 51.766 0 0 4.3338 0 0 535.2452870099625 0 535.2452870099625 0 41.58870936703728 0 0 0 1.7302046884880937 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.3338 + + 118 NaN NaN 171988.7 NaN 10191 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13320 60.328 NaN 348470 35 0 22901 0.261 + 10473 IPDPLQHGNYL 11 67 633.8275423033657 1265.6405316735313 2 633.828369140625 MULTI HCD FTMS 0 0 0 13315 108378.2578125 0.43065859913874593 -4 0.11204910278320312 5 Unmodified _IPDPLQHGNYL_ ENSG00000134757|ENST00000257189|DSG3 44.391923383255 0.10866469234509374 2 {I|L}PDQ 4 7 41.732 0 0 3.2973 0 0 0 809.3854464166624 809.3854464166624 10.528623785799581 0 0 0 0 0.5 0 0.28872548999643577 0.7302046884880937 {I|L}PDQ 3.2973 - 464 + NaN NaN 141514.2 NaN 10192 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13321 60.331 NaN 227330 35 0 21030 0.261 + 20363 NYSYLHCEW 9 71 607.7497219644296 1213.484890995659 2 607.7503051757812 MULTI HCD FTMS 0 0 0 13315 29841.3359375 0.3243346398906479 5 -0.1543426513671875 6 Unmodified _NYSYLHCEW_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 43.85829265575387 0.04763305254408404 2 [YN]S 3 6 43.002 0 0 3.5437 0 0 0 846.3238246716934 846.3238246716934 18.53794667124717 0 0 0 0 1 2 0.3807196863200844 0.3252574989159953 + [YN]S 3.5437 + + 71 NaN NaN 121707.6 NaN 10193 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13322 60.334 NaN 221280 35 0 26445 0.261 + 11687 IYYVDVQKF 9 49 587.8105627149748 1173.6065724967495 2 587.8103637695312 MULTI HCD FTMS 0 0 0 13315 72433.7421875 0.8150565241837847 -2 0.06632232666015625 7 Unmodified _IYYVDVQKF_ ENSG00000160410|ENST00000291842|SHKBP1 36.506200033944 0.08138327636155518 2 [Y{I|L}]YV[DV]QK{M(Oxidation (M))|F} 9 0 + 66.889 0 0 5.6995 5.6995 88.063 0 0 0 17.63682493045401 51.67280924645823 17.63682493045401 9.208187539523749 0 1.8807196863200843 2 0 0 + + [Y{I|L}]YV[DV]QK{M(Oxidation (M))|F};[Y{I|L}]YV[DV][AG]K{M(Oxidation (M))|F};[Y{I|L}]YE[{I|L}A]QK{M(Oxidation (M))|F};[Y{I|L}]YE[{I|L}A][AG]K{M(Oxidation (M))|F};[RH]Q[{M(Oxidation (M))|F}T][NP]K{M(Oxidation (M))|F} 5.6995;4.9149;4.8669;4.0823;0.62662 +;-;-;-;- + 142 NaN NaN 124056.3 NaN 10194 3126 13315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13324 60.339 NaN 1214900 35 0 130900 0.327 + 27095 SYMGHFDLL 9 99 549.7498597197784 1097.4851665063568 2 549.75 MULTI HCD FTMS 0 0 0 13323 768464.8125 0.0912702035875999 -16 0.42971038818359375 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 55.045 0 0 5.0155 5.0155 90.139 0 0 0 7.376430167995878 15.52432802706015 7.376430167995878 23.486446888048107 0 1.8494850021680094 0 1.0228787452803376 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};SY[QT]{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}{I|L};[Y{I|L}]G{[YD]|[{M(Oxidation (M))|F}M]}[HV][MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[QT][MT];{NN|[MP]|[D{I|L}]|[EV]}N[Y{I|L}][WQ]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[WQ]{M(Oxidation (M))|F} 5.0155;2.8755;2.5265;2.2704;0.9571;0.64613;0.11157;0.054694 +;-;-;-;-;-;-;- + 840 NaN NaN 278331.3 NaN 10195 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13325 60.344 NaN 1523800 35 0 210860 0.261 + -1 VLWTLCFYLFF 11 91 503.59306843662836 1507.757375910085 3 503.9274597167969 MULTI HCD FTMS 0 0 0 13323 322225.1875 0.04241586565041528 31 -0.8962631225585938 2 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 18.721224879955976 0.29396376558286563 2 {M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 72.255 0 0 4.7922 0 0 564.2649869652099 0 564.2649869652099 0 57.65108548214123 0 0 0 3.079689690656103 0 1.274227503252014 0 {M(Oxidation (M))|F}TNR{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7922 - 462 NaN NaN 319009 NaN 10196 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13326 60.347 NaN 402020 35 0 76451 0.261 + 21428 PVSSYLATF 9 67 492.75399314474805 983.4934333562961 2 493.7688293457031 MULTI HCD FTMS 0 0 0 13323 12952.7919921875 0.11438521231627868 -7 0.18729019165039062 3 Unmodified _PVSSYLATF_ REV__ENSG00000204531|ENST00000259915|POU5F1;REV__ENSG00000212993|ENST00000696633|POU5F1B;REV__nc|ENSG00000204531|Q01860-2|POU5F1 34.10243960390752 0.09241788333544565 2 P{M(Oxidation (M))|F}DTA{I|L}A 7 -1 44.602 0 0 4.535 0 0 0 265.1300142877563 265.1300142877563 -5.866195743591192 0 -5.866195743591192 0 0 0 0 0.7302046884880937 0 P{M(Oxidation (M))|F}DTA{I|L}A 4.535 - 176 + NaN NaN 153254.7 NaN 10197 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13327 60.351 NaN 482480 35 0 63163 0.261 + 13695 KYPHYFPLL 9 76 589.3238196682227 1176.6330864032452 2 589.3238525390625 MULTI HCD FTMS 0 0 0 13323 188961.09375 0.43326918463561065 -4 0.11867141723632812 4 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 77.98433622928108 0.006504613272346738 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}P{I|L}{I|L} 9 3 + 57.118 0 0 4.8544 4.8544 89.808 0 0 0 2.0193091132104968 33.077053078093215 2.0193091132104968 22.543096649567076 0 1.3494850021680094 0 0.5228787452803376 0.7302046884880937 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P][KC][{I|L}P]HEQ{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y[{I|L}P]{M(Oxidation (M))|F}{I|L} 4.8544;2.9385;1.9534 -;-;- 341 NaN NaN 167569.7 NaN 10198 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13328 60.354 NaN 379120 35 0 29255 0.261 + 12044 KIIQVAVEL 9 85 506.82380030827693 1011.6330476833539 2 506.8238830566406 MULTI HCD FTMS 0 0 0 13323 58264.48828125 0.8108871167225082 1 -0.03284454345703125 5 Unmodified _KIIQVAVEL_ BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 31.26834338654808 0.10542797264966089 2 AVE{I|L} 4 5 36.459 0 0 3.6039 0 0 581.389452049025 0 581.389452049025 0 22.47933455448525 0 0 0 1.079689690656103 0 0 0 + AVE{I|L} 3.6039 + + 455 NaN NaN 141042.2 NaN 10199 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13329 60.357 NaN 322740 35 0 26394 0.261 -1 LPAGDALLQM 10 68 522.773432369215 NaN 0 522.773193359375 PEAK HCD FTMS 0 0 0 13323 38996.05078125 0.18662512017639057 -7 0.18729019165039062 6 Oxidation (M) _LPAGDALLQM(Oxidation (M))_ ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 34.40172386719151 0.16785494504845722 2 {I|L}Q 2 -1 29.776 0 0 2.8534 0 0 637.3447945706581 162.0228212945922 799.3676158652503 0 0 0 0 0 1.5 0 0 0.3807196863200844 {I|L}Q 2.8534 + + 159 + NaN NaN 137689.1 NaN 10200 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13330 60.361 NaN 184200 35 0 12012 0.261 + 21464 PYADQVFRI 9 58 554.7924799523553 1107.5704069715105 2 554.7930908203125 MULTI HCD FTMS 0 0 0 13323 31793.71484375 0.6522873237797668 1 -0.03284454345703125 7 Unmodified _PYADQVFRI_ ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ 29.84058131909904 0.11198220037953927 2 PYWAR{M(Oxidation (M))|F}R{I|L} 8 4 + 56.08 0 0 5.0634 5.0634 89.776 0 0 0 42.63682493045401 5.686362358410122 5.686362358410122 18.750612633917 0 1.6237125054200234 2 0 0 PYWAR{M(Oxidation (M))|F}R{I|L};{I|L}{M(Oxidation (M))|F}WAR{M(Oxidation (M))|F}R{I|L};PYA{[SA]|[TG]}[PS]{M(Oxidation (M))|F}R{I|L};PY[QT][PS]{M(Oxidation (M))|F}R{I|L};{I|L}{M(Oxidation (M))|F}A{[SA]|[TG]}[PS]{M(Oxidation (M))|F}R{I|L};{I|L}{M(Oxidation (M))|F}[QT][PS]{M(Oxidation (M))|F}R{I|L} 5.0634;3.3704;2.8255;2.6665;1.584;1.425 -;-;-;-;-;- 91 + NaN NaN 112362.8 NaN 10201 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13331 60.364 NaN 168800 35 0 25791 0.262 + -1 ELVECVAI 8 51 466.7411674876955 931.4677820421911 2 466.7405090332031 MULTI HCD FTMS 0 0 0 13323 63053.25390625 0.6079058556802753 -9 0.2430419921875 8 Carbamidomethyl (C) _ELVEC(Carbamidomethyl (C))VAI_ REV__ENST00000366997.8_1_1:211922280-211922472:-|nuORF 8.593279151180031 0.5292430274356741 2 VA{I|L} 3 -1 28.188 0 0 3.0261 0 0 630.26567275215 0 630.26567275215 0 14.208187539523749 0 0 0 0.5 0 0 0 VA{I|L} 3.0261 + + 17 NaN NaN 105596.8 NaN 10202 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13332 60.367 NaN 124510 35 0 21127 0.261 + -1 VVHPHAPDQRM 11 50 434.88227666134424 NaN 0 434.882080078125 PEAK HCD FTMS 0 0 0 13323 39290.59375 0.6944890115447911 17 -0.4877471923828125 9 Oxidation (M) _VVHPHAPDQRM(Oxidation (M))_ REV__ENSG00000133316|ENST00000278856|WDR74;REV__ENST00000453708.6_1_11:62603082-62607042:-|nuORF;REV__ENST00000538150.1_1_11:62602806-62603310:-|nuORF;REV__ENST00000540620.5_1_11:62602715-62607042:-|nuORF;REV__ENST00000541930.5_1_11:62601897-62607060:-|nuORF;REV__nc|ENSG00000133316|Q6RFH5-2|WDR74 1.4551175022131473 0.3379923941668102 2 AP 2 -1 9.464 0 0 1.0906 0 0 130.34101709046348 566.2899874322874 696.6310045227508 0 0 0 0 0 0 0 0 0 AP 1.0906 + + 5 + NaN NaN 109283.1 NaN 10203 3127 13323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13334 60.372 NaN 839000 35 0 114480 0.327 + 3296 EEFGRFASF 9 80 545.2537909370494 1088.4930289408987 2 545.25390625 MULTI HCD FTMS 0 0 0 13333 408626.90625 0.7823644647840706 2 -0.062488555908203125 1 Unmodified _EEFGRFASF_ ENSG00000204287|ENST00000395388|HLA-DRA 140.63315402491853 1.8728231636916273E-05 2 EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}AS{M(Oxidation (M))|F} 9 0 + 99.298 0 0 9.1226 9.1226 98.071 0 0 0 13.635970710873536 13.635970710873536 13.635970710873536 50.006061517277004 0 2.2971062485323515 1.0969100130080565 1.3754223615525998 0 + + EE{M(Oxidation (M))|F}GR{M(Oxidation (M))|F}AS{M(Oxidation (M))|F};EEW[VG][HV]S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}G[VG][HA]P{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{[NV]|[RG]}[NG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{[NV]|[RG]}EE{M(Oxidation (M))|F};EEW[VG]{[QD]|[EN]|[WG]|[KD]|[RS]}{[QV]|[N{I|L}]|[RA]|[KV]} 9.1226;4.5285;3.9107;3.0245;1.944;1.3178 +;-;-;-;-;- + 922 + NaN NaN 212173.5 NaN 10204 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13335 60.377 NaN 492800 35 0 63006 0.261 + -1 LEAMEMVLM 9 87 541.7495442480572 NaN 0 541.7689819335938 PEAK HCD FTMS 0 0 0 13333 25650.5625 1 0 0 2 Oxidation (M) _LEAMEMVLM(Oxidation (M))_ REV__ENSG00000165025|ENST00000375754|SYK;REV__nc|ENSG00000165025|P43405-2|SYK 12.531546534597751 0.23452071659215576 2 YT{M(Oxidation (M))|F}P 4 -1 20.394 0 0 1.8857 0 0 113.04320363107679 457.1833895318969 570.2265931629737 0 0 0 0 0 0 0 0.7742275032520141 0 YT{M(Oxidation (M))|F}P 1.8857 - 400 + NaN NaN 166720.6 NaN 10205 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13336 60.38 NaN 448150 35 0 151650 0.261 + 31794 VYLYYELT 8 54 532.2702347220985 1062.525916510997 2 532.2821044921875 MULTI HCD FTMS 0 0 0 13333 13121.21484375 0.24991161290380182 8 -0.22581863403320312 3 Unmodified _VYLYYELT_ ENSG00000182107|ENST00000555868|TMEM30B;ENST00000557163.1_1_14:61746812-61748042:-|nuORF 9.347437153973935 0.5250182646323369 2 [YV][K{I|L}][C(Carbamidomethyl (C))H]P{M(Oxidation (M))|F} 8 5 + 31.884 0 0 3.0008 3.0008 88.515 0 0 0 7.727562184969372 24.89454989793387 7.727562184969372 31.88424994129406 0 0 1.6989700043360187 0 0 [YV][K{I|L}][C(Carbamidomethyl (C))H]P{M(Oxidation (M))|F} 3.0008 - 24 NaN NaN 157247.3 NaN 10206 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13337 60.383 NaN 389360 35 0 153420 0.262 + 24054 RWSPVRPLVF 10 53 419.58028146478347 1255.7190149945504 3 419.5802307128906 MULTI HCD FTMS 0 0 0 13333 75816.125 0.17356736860555375 9 -0.2651786804199219 4 Unmodified _RWSPVRPLVF_ ENSG00000119333|ENST00000372715|DYNC2I2 4.715918219556657 0.45034159980724314 2 V{M(Oxidation (M))|F} 2 8 25.969 0 0 2.0681 0 0 991.5725759791595 0 991.5725759791595 0 12.870156338638594 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.0681 + + 11 NaN NaN 145623.8 NaN 10207 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13338 60.387 NaN 665100 35 0 115650 0.261 + 15509 LPDMVVSHL 9 84 505.7705025796239 1009.5264522260478 2 505.7704162597656 MULTI HCD FTMS 0 0 0 13333 211145.59375 0.2623265740485862 -5 0.15151596069335938 5 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 88.95385435242217 0.004553379958619559 2 {I|L}PDMVVSH{I|L} 9 0 + 97.872 0 0 9.6948 9.6948 96.683 0 0 0 83.89252201045579 7.632192780232785 7.632192780232785 18.732040608115454 0 2.6791746928241125 1.5228787452803376 0.4247425010840047 0 + + {I|L}PDMVVSH{I|L};[{I|L}P]DMVVSH{I|L};[DP]{I|L}MVVSH{I|L};[MD]P{I|L}VVSH{I|L};[{I|L}P][EC]{I|L}VSH{I|L};[DP]M{I|L}VVSH{I|L};[{I|L}P]D{[ES]|[DT]|[{I|L}C]}{I|L}SH{I|L};[MD]PV{I|L}VSH{I|L};[DP]MV{I|L}VSH{I|L};[{I|L}P][EC]V{I|L}SH{I|L} 9.6948;7.8393;6.1337;5.8075;5.7412;5.464;5.3856;5.1675;4.824;4.6495 +;+;-;-;-;-;-;-;-;- + 534 + NaN NaN 189640.2 NaN 10208 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13339 60.39 NaN 384140 35 0 18219 0.261 + 35364 YYAYLPAKL 9 80 551.3026003806707 1100.5906478281413 2 551.816162109375 MULTI HCD FTMS 0 0 0 13333 7233.44970703125 0.12152982869190138 -2 0.058990478515625 6 Unmodified _YYAYLPAKL_ ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-3|TMEM63B 28.486842064014134 0.11819662193267319 2 YYA 3 6 36.695 0 0 3.3341 0 0 0 700.4029495980267 700.4029495980267 1.741115296921265 0 0 0 0 0.7742275032520141 2 0 0 + YYA 3.3341 + + 490 + NaN NaN 137584.2 NaN 10209 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13340 60.393 NaN 366050 35 0 39866 0.261 + 35748 YYLQGGFSRF 10 62 619.304044653647 1236.593536374094 2 619.3037719726562 MULTI HCD FTMS 0 0 0 13333 117299.1875 0.5244508237669693 -2 0.058990478515625 7 Unmodified _YYLQGGFSRF_ ENSG00000130829|ENST00000342782|DUSP9 57.107585691075435 0.05194081441006845 2 YY{I|L}QN{M(Oxidation (M))|F}SR{M(Oxidation (M))|F} 9 2 + 93.565 0 0 7.5664 7.5664 91.289 0 0 0 74.10138713908098 9.009461452434238 9.009461452434238 9.208187539523749 0 2.6549471895720984 1.6989700043360187 0.23965182871044374 0.3807196863200844 YY{I|L}QN{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}[AG]N{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}QGG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}[AG]GG{M(Oxidation (M))|F}SR{M(Oxidation (M))|F};YY{I|L}K{[CT]|[{M(Oxidation (M))|F}G]}GSR{M(Oxidation (M))|F};YY[KT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}SR{M(Oxidation (M))|F};YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QV]|[N{I|L}]|[RA]|[KV]}SR{M(Oxidation (M))|F};[NP]D{I|L}K{[CT]|[{M(Oxidation (M))|F}G]}GSR{M(Oxidation (M))|F};Y[RH]WWSR{M(Oxidation (M))|F};[NP]D{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QV]|[N{I|L}]|[RA]|[KV]}SR{M(Oxidation (M))|F} 7.5664;6.8217;6.8217;6.0806;5.1715;4.0754;3.4493;3.1575;1.6092;1.4318 -;-;+;-;-;-;-;-;-;- + 562 + NaN NaN 134363.8 NaN 10210 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13341 60.397 NaN 128360 35 0 15338 0.264 + 12671 KWFFQKLRF 9 43 433.91676727081136 NaN 0 433.9169616699219 PEAK HCD FTMS 0 0 0 13333 50889.7734375 0.6785391476451517 -5 0.15151596069335938 8 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 14.405379775768559 0.22495052155071432 2 K 1 8 3.9794 0 0 0.45961 0 0 303.46114577033524 431.24021326236567 734.7013590327009 0 0 0 0 0 0 0 0 0 + K 0.45961 + + 12 + NaN NaN 95888.7 NaN 10211 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13342 60.4 NaN 83190 35 0 7372.9 0.261 -1 MPDLDLHL 8 45 485.23917546112204 968.4637979890441 2 485.2390441894531 MULTI HCD FTMS 0 0 0 13333 39117.703125 0.46708167077025203 -7 0.190582275390625 9 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 18.13498045792455 0.4603629008820478 2 PE 2 -1 17.959 0 0 1.8544 0 0 724.3737660138687 0 724.3737660138687 0 17.95880017344075 0 0 0 0 0 0 0 PE 1.8544 - 11 NaN NaN 92608.8 NaN 10212 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13343 60.403 NaN 130580 35 0 7959.6 0.261 -1 MPMQDIKMIL 10 53 626.3105335312357 NaN 0 626.3118286132812 PEAK HCD FTMS 0 0 0 13333 37129.39453125 0.7104536289538972 -3 0.0953521728515625 10 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 6.630372943996041 0.3345096087358732 2 {I|L}{M(Oxidation (M))|F}KM 4 -1 19.725 0 0 1.5772 0 0 131.09974223995215 597.2375582330686 728.3373004730208 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L}{M(Oxidation (M))|F}KM 1.5772 - 11 + NaN NaN 113932.6 NaN 10213 3128 13333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13345 60.408 NaN 1348000 35 0 148720 0.327 + 34461 YPEVRIVLM 9 101 568.3125290308486 1134.6105051284972 2 568.3128051757812 MULTI HCD FTMS 0 0 0 13344 557635.9375 0.8888258295171455 2 -0.059108734130859375 1 Oxidation (M) _YPEVRIVLM(Oxidation (M))_ ENSG00000135829|ENST00000367549|DHX9 96.36657018975838 0.004359138328518304 2 YPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 106.93 0 0 9.4248 9.4248 97.19 0 0 0 67.32016661481893 16.478174818886373 16.478174818886373 26.417527312129977 0 2.829689690656103 1.3010299956639813 0.8494850021680094 0 + + YPEVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}VPY;[EP]YVR{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]R{I|L}V{I|L}{M(Oxidation (M))|F};[EP]VYR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EV[VG]{I|L}{[CA]|SS}[KG];[YQ][KG][PA]{I|L}V{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[KQ][PS]{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}V]{NN|[MP]|[D{I|L}]|[EV]}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}V{I|L}{M(Oxidation (M))|F} 9.4248;7.0964;6.1038;5.5754;5.355;4.5187;2.0854;1.9125;1.8791;1.7178 +;+;-;-;-;-;-;-;-;- + 1429 + NaN NaN 291104.4 NaN 10214 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13346 60.413 NaN 796050 35 0 69209 0.261 + 34716 YPVEIHEYL 9 85 581.7925293330666 1161.570505732933 2 581.7926635742188 MULTI HCD FTMS 0 0 0 13344 351667.6875 0.10296260996868897 11 -0.304046630859375 2 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 107.99703571036002 0.003269392969029945 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L} 9 0 + 89.196 0 0 7.6789 7.6789 90.092 0 0 0 9.158781176037891 7.7815125038364386 7.7815125038364386 7.7815125038364386 0 2.4247425010840047 2 0.28872548999643577 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;YPYH{I|L}EVE{I|L};YPYH{I|L}E{I|L}D{I|L};YPVE{I|L}[YE]H{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L};[YE][VP]{I|L}HEY{I|L};[YE][VP]{I|L}HYE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V[QA]PDPY{I|L};[YE][VP]{I|L}HE{I|L}Y 7.6789;7.009;6.8905;6.7412;6.6258;6.6237;5.1208;4.7589;4.4773;4.4509 +;-;-;-;-;-;-;-;-;- + 1322 NaN NaN 205468.9 NaN 10215 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13347 60.416 NaN 1135200 35 0 114590 0.261 + 13321 KYMDVQFDF 9 86 604.7681496085214 1207.5217462838427 2 604.7685546875 MULTI HCD FTMS 0 0 0 13344 508201.34375 0.11416141256740409 -12 0.3383598327636719 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 103.82355648334675 0.003950725192926219 2 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 85.006 0 0 7.0397 7.0397 87.851 0 0 0 5.128333601982007 13.199397642263335 5.128333601982007 5.128333601982007 0 1.5 1.3010299956639813 1.0114393726401687 0.9749073637206092 [YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE][MT]KQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE][MT]K[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.0397;6.615;6.2772;6.2772;5.8525;5.2784;5.0771;4.9736;4.7108;4.3145 -;+;-;-;-;-;-;-;-;- + 1883 NaN NaN 264349.6 NaN 10216 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13348 60.42 NaN 608570 35 0 37246 0.261 + 4573 EYLLKVNEI 9 89 560.8164621290739 1119.6183713249477 2 560.8162841796875 MULTI HCD FTMS 0 0 0 13344 135721.390625 0.40244610751004684 6 -0.163482666015625 4 Unmodified _EYLLKVNEI_ ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2 72.96794272382148 0.008127836904478181 2 [YE]{I|L}{I|L}KVNE{I|L} 9 0 + 59.169 0 0 5.2848 5.2848 88.339 0 0 0 30.760497444883285 15.079219532557943 15.079219532557943 10.061668675368622 0 0.5044321917401078 1.3010299956639813 0.7887254899964358 0.9916440611282626 + + [YE]{I|L}{I|L}KVNE{I|L};[YE]{I|L}{I|L}KAAAE{I|L};[YE]{I|L}{I|L}KVGGE{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}[SG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[WR]{I|L}[YQ]{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}[SG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[DV]K{I|L}[YQ]{I|L};[YV]P{I|L}[VG][KA]HH 5.2848;4.3861;4.2288;0.67508;0.63421;0.40621;0.36053;0.11582 +;-;-;-;-;-;-;- + 1277 + NaN NaN 192843.5 NaN 10217 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13349 60.423 NaN 754850 35 0 72705 0.261 + 27370 SYSMIVNNL 9 82 528.7552263044756 1055.4958996757512 2 528.7553100585938 MULTI HCD FTMS 0 0 0 13344 104802.90625 0.27008574114719797 6 -0.163482666015625 5 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 43.85829265575387 0.04763305254408404 2 [YV]PV[R{M(Oxidation (M))|F}]{I|L}S 8 7 53.817 0 0 5.0988 0 0 0 90.9757969560226 90.9757969560226 15.764837301042718 0 0 0 0 0.8807196863200843 1.6989700043360187 0.5 0 [YV]PV[R{M(Oxidation (M))|F}]{I|L}S 5.0988 - 650 NaN NaN 214199.6 NaN 10218 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13350 60.426 NaN 293190 35 0 15707 0.261 + 20349 NYSNIRFQF 9 66 594.7930318597923 1187.5715107863846 2 595.7958374023438 MULTI HCD FTMS 0 0 0 13344 81942.5625 0.449947775307012 -6 0.1877593994140625 6 Unmodified _NYSNIRFQF_ ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 13.90604991867851 0.24021115267848145 2 YDYSN{I|L} 6 6 41.943 0 0 3.5319 0 0 0 429.2252291315063 429.2252291315063 26.893878342760047 0 0 0 0 0 0 0.3807196863200844 0 YDYSN{I|L} 3.5319 - 207 + NaN NaN 137793 NaN 10219 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13351 60.43 NaN 150890 35 0 31212 0.264 + 30842 VQGSTKNRCKF 11 51 423.22551465933094 1266.6547145781929 3 423.22564697265625 MULTI HCD FTMS 0 0 0 13344 45575.69140625 0.6237701293959083 1 -0.0262451171875 7 Unmodified _VQGSTKNRCKF_ REV__ENSG00000205111|ENST00000699627|CDKL4;REV__nc|ENSG00000205111|Q5MAI5-2|CDKL4;REV__nc|ENSG00000205111|Q5MAI5|CDKL4 11.494710602746466 0.35692862141139436 2 VQ{I|L}{M(Oxidation (M))|F}[WY][HK]{M(Oxidation (M))|F} 9 -1 + 39.843 0 0 3.1455 3.1455 80.757 0 0 0 24.358500049694534 0.915149811213503 0.915149811213503 1.2493873660830062 0 0.5 0 0 0.5 VQ{I|L}{M(Oxidation (M))|F}[WY][HK]{M(Oxidation (M))|F};VQ{I|L}{M(Oxidation (M))|F}[HT][YR]G{M(Oxidation (M))|F};VQ{I|L}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QN]|[E{I|L}]|[KN]};VQ{I|L}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KG][C(Carbamidomethyl (C))R] 3.1455;3.0469;2.3421;2.203 -;-;-;- 67 + NaN NaN 115897.5 NaN 10220 3129 13344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13353 60.435 NaN 4757100 35 0 871810 0.327 + 24350 RYIDRIHIFF 10 77 460.5908872349479 1378.7508323050438 3 460.5909729003906 MULTI HCD FTMS 0 0 0 13352 1978327.875 0.20851145126267645 -6 0.18780136108398438 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 39.922945255915025 0.1460754433722493 2 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 72.384 0 0 5.2499 0 0 547.2755955205408 0 547.2755955205408 0 62.91956270212445 0 0 0 2.774227503252014 0 0 0.3494850021680094 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2499 + + 455 NaN NaN 809015.1 NaN 10221 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13354 60.439 NaN 657160 35 0 342930 0.261 -1 0 57 427.3027308391812 852.5909087451624 2 427.30267333984375 MULTI HCD FTMS 0 0 0 13352 361476.4375 0.4260133927482992 8 -0.22212600708007812 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.46674 0 0 249.38010659848118 453.15290247135005 702.5330090698312 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46674 - 12 + NaN NaN 186075.9 NaN 10222 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13355 60.443 NaN 453430 35 0 27213 0.261 + -1 PLSFRCKKM 9 82 591.8106964518471 NaN 0 591.8297729492188 PEAK HCD FTMS 0 0 0 13352 8993.4580078125 0.9783120127986946 1 -0.032863616943359375 3 Carbamidomethyl (C),Oxidation (M) _PLSFRC(Carbamidomethyl (C))KKM(Oxidation (M))_ REV__ENST00000546395.1_17:6916671-6916985:+|nuORF 30.636539890814138 0.11600348607007434 2 {I|L}{[QG]|[NA]}{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L} 7 -1 15.174 0 0 1.2842 0 0 165.0406531972863 288.1352938287719 453.1759470260582 0 0 0 0 0 0 0 0.6203715150305281 0.5994850021680094 {I|L}{[QG]|[NA]}{[QV]|[N{I|L}]|[RA]|[KV]}S{I|L} 1.2842 - 277 + NaN NaN 163292.8 NaN 10223 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13356 60.446 NaN 1228800 35 0 490010 0.261 + 30442 VLPNRPFGLF 10 77 580.3346872533688 1158.6548215735374 2 580.3346557617188 MULTI HCD FTMS 0 0 0 13352 394544.84375 0.17529103557126108 -6 0.18780136108398438 4 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 20.453626601364224 0.3197956946484955 2 V{I|L}[QP][{I|L}A]{M(Oxidation (M))|F}A 8 6 54.174 0 0 4.6756 0 0 0 316.13954081086746 316.13954081086746 13.329824663958547 0 0 0 0 1.3807196863200843 1.5228787452803376 0 0.4247425010840047 V{I|L}[QP][{I|L}A]{M(Oxidation (M))|F}A 4.6756 - 533 + NaN NaN 270570.8 NaN 10224 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13357 60.449 NaN 293360 35 0 35224 0.262 -1 0 58 492.2557060064337 491.2484295398337 1 492.2558288574219 MULTI HCD FTMS 0 0 0 13352 111858.9453125 0.5536703442305263 3 -0.0884552001953125 5 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 -1 19.041 0 0 3.8761 0 0 0 167.09364983696182 167.09364983696182 -0.42288138967165523 0 -0.42288138967165523 0 0 0 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3.8761 - 16 NaN NaN 131092.3 NaN 10225 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13358 60.453 NaN 1018200 35 0 153570 0.261 + 32046 VYQAVQALY 9 87 527.7800898334928 1053.5456267337854 2 528.2793579101562 MULTI HCD FTMS 0 0 0 13352 86634.1640625 0.7251594423454596 1 -0.032863616943359375 6 Unmodified _VYQAVQALY_ ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant 28.486842064014134 0.11819662193267319 2 [YV]Q[KQ]D{I|L}S 8 4 47.414 0 0 4.5005 0 0 0 89.02673989837379 89.02673989837379 26.307196863200843 0 0 0 0 0.7059771852360797 1.6989700043360187 0.5 0.3494850021680094 [YV]Q[KQ]D{I|L}S 4.5005 - 981 NaN NaN 245283.1 NaN 10226 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13359 60.456 NaN 773200 35 0 88746 0.261 + 645 APIRPDIVNF 10 109 571.3219731178132 1140.6293933024263 2 571.3212890625 MULTI HCD FTMS 0 0 0 13352 176987.96875 0.26083969933233575 -3 0.09533309936523438 7 Unmodified _APIRPDIVNF_ ENSG00000174444|ENST00000307961|RPL4;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF 49.52724829834842 0.07950882623896251 2 A[DP]{I|L}VN{M(Oxidation (M))|F} 7 3 53.148 0 0 4.6595 0 0 366.23790175605626 0 366.23790175605626 0 41.465460211140055 0 0 0 2 0 0 0.3807196863200844 A[DP]{I|L}VN{M(Oxidation (M))|F} 4.6595 - 780 NaN NaN 199658.8 NaN 10227 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13360 60.459 NaN 218390 35 0 42796 0.263 + 24763 RYNPRILFQL 10 49 440.59095309258294 1318.751029877949 3 440.591064453125 MULTI HCD FTMS 0 0 0 13352 57937.49609375 0.20374722100420792 8 -0.22212600708007812 8 Unmodified _RYNPRILFQL_ ENSG00000164961|ENST00000318410|WASHC5 8.444304893310646 0.4306066564229251 2 {M(Oxidation (M))|F}Q{I|L} 3 7 36.198 0 0 2.7449 0 0 912.5284438398756 0 912.5284438398756 0 19.20818753952375 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}Q{I|L} 2.7449 + + 32 NaN NaN 122912 NaN 10228 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13361 60.463 NaN 194380 35 0 13047 0.261 + 18407 MPSQFRDIL 9 61 553.7862398577498 1105.5579267822995 2 553.7867431640625 MULTI HCD FTMS 0 0 0 13352 69422.171875 0.9089855280016162 1 -0.032863616943359375 9 Unmodified _MPSQFRDIL_ ENSG00000100393|ENST00000263253|EP300 18.373094154950223 0.20161688160436167 2 MPSQ{M(Oxidation (M))|F}{[RE]|[WV]}[{I|L}V] 9 2 + 38.835 0 0 3.5127 3.5127 85.787 0 0 0 24.85531242661758 0.034693515935096286 0.034693515935096286 9.208187539523756 0 0.4247425010840047 0 0.3494850021680094 0 MPSQ{M(Oxidation (M))|F}{[RE]|[WV]}[{I|L}V];MPS[AG]{M(Oxidation (M))|F}{[RE]|[WV]}[{I|L}V];[KC][DP]{M(Oxidation (M))|F}{[RE]|[WV]}[{I|L}V];{NN|[MP]|[D{I|L}]|[EV]}[WY]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L} 3.5127;2.6798;0.23718;0.19468 -;-;-;- 51 + NaN NaN 117454.9 NaN 10229 3130 13352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13363 60.467 NaN 956250 35 0 64303 0.327 + 1252 AYLSGMLRF 9 89 537.2760035353969 1072.5374541375936 2 537.276123046875 MULTI HCD FTMS 0 0 0 13362 221488.96875 0.732015563954783 -1 0.032863616943359375 1 Oxidation (M) _AYLSGM(Oxidation (M))LRF_ ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF;nc|ENSG00000167881|Q9UHB9-2|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68 82.5293158979368 0.005033931517079822 2 AY{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F} 9 0 + 92.942 0 0 8.6656 8.6656 96.658 0 0 0 57.94476118926656 14.09256854528806 14.09256854528806 30.273109370204452 0 2.1861818737241734 1.6989700043360187 0.4247425010840047 0 + + AY{I|L}SG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};AY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};[Y{I|L}]ASG{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ]{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YQ]S{I|L}{[ES]|[DT]|[{I|L}C]};[YV][YR]GS{I|L}{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}V][WQ]{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[EP][HK]{[ES]|[DT]|[{I|L}C]};[Y{I|L}]{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}R{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T[EP][HK]{[ES]|[DT]|[{I|L}C]} 8.6656;5.843;4.7359;4.4431;4.3688;3.9572;2.8248;2.3197;1.9133;1.5831 +;-;-;-;-;-;-;-;-;- + 475 + NaN NaN 236994 NaN 10230 3131 13362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13364 60.472 NaN 506530 35 0 47731 0.261 + 12730 KYAMMFAEL 9 80 560.2641780464887 1118.5138031597774 2 560.2647094726562 MULTI HCD FTMS 0 0 0 13362 204463.921875 0.5352127244737871 -5 0.1543426513671875 2 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 43.77239144664712 0.04802738721622131 2 [YV][KC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 9 3 + 49.592 0 0 4.4338 4.4338 82.661 0 0 0 2.641368885835213 4.220698048048291 2.641368885835213 2.641368885835213 0 1.2302046884880937 1.3979400086720375 0 0 [YV][KC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{M(Oxidation (M))|F}M{M(Oxidation (M))|F}AE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[HN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[PA]DD{M(Oxidation (M))|F}AE{I|L};{[CP]|[EA]}[{I|L}P]DD{M(Oxidation (M))|F}AE{I|L};[VP][DV]DD{M(Oxidation (M))|F}AE{I|L};{[CP]|[EA]}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}CK{I|L};{[CP]|[EA]}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}C{I|L}K;{[{M(Oxidation (M))|F}D]|MM}T[WP]{I|L}PM{I|L} 4.4338;4.1976;3.8522;3.6105;3.483;3.0564;2.9447;1.3997;1.2639;0.25424 -;-;-;-;-;-;-;-;-;- 1102 NaN NaN 167957.8 NaN 10231 3131 13362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13365 60.475 NaN 338040 35 0 23816 0.261 + 13212 KYLVLANML 9 72 540.8096009654428 1079.6046489976854 2 540.809814453125 MULTI HCD FTMS 0 0 0 13362 131499.921875 0.5109096826366306 -4 0.12819671630859375 3 Oxidation (M) _KYLVLANM(Oxidation (M))L_ ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2 56.17704186161178 0.022929533404884107 2 V{I|L}AN{M(Oxidation (M))|F}{I|L} 6 3 64.201 0 0 5.9467 0 0 404.24104506660314 0 404.24104506660314 0 41.242209500285014 0 0 0 2.1549471895720984 0 0 0 + V{I|L}AN{M(Oxidation (M))|F}{I|L} 5.9467 + + 109 NaN NaN 137726 NaN 10232 3131 13362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13366 60.479 NaN 484080 35 0 69090 0.261 + 5744 FPAGYMYPSM 10 71 598.2437384201628 1194.4729239071255 2 598.2437133789062 MULTI HCD FTMS 0 0 0 13362 175736.046875 0.6024427328646391 -8 0.24686813354492188 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 2 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 61.247 0 0 5.1276 0 0 63.99243609333764 0 63.99243609333764 0 46.29879372956886 0 0 0 0.8252574989159953 0 2.298455006504028 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.1276 - 276 + NaN NaN 165634.5 NaN 10233 3131 13362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13367 60.482 NaN 279190 35 0 15137 0.261 + 8363 GYKRYWECR 9 60 630.8032570962804 NaN 0 630.7877197265625 PEAK HCD FTMS 0 0 0 13362 52983.36328125 0.8727880105825315 -1 0.032863616943359375 5 Unmodified _GYKRYWECR_ REV__ENSG00000272899|ENST00000609480|ATP6V1FNB 6.723162845929126 0.26266733336404485 2 A{[MS]|[{M(Oxidation (M))|F}A]}VY 5 -1 14.693 0 0 1.1665 0 0 277.1377389250444 428.1933687799438 705.3311077049882 0 0 0 0 0 0 0 0.8494850021680094 0 A{[MS]|[{M(Oxidation (M))|F}A]}VY 1.1665 - 58 + NaN NaN 132660.9 NaN 10234 3131 13362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13368 60.485 NaN 261420 35 0 22840 0.261 + 24725 RYLVEVEEL 9 65 575.3111091592506 1148.607665385301 2 575.3110961914062 MULTI HCD FTMS 0 0 0 13362 63558.703125 0.17911619108946755 10 -0.26445770263671875 6 Unmodified _RYLVEVEEL_ ENSG00000088356|ENST00000202017|PDRG1 34.93206674587334 0.08860942999206235 2 [Y{I|L}][RV]EVEE{I|L} 9 2 + 60.154 0 0 5.2371 5.2371 85.231 0 0 0 7.393324630099869 49.81964183949026 7.393324630099869 6.262874945799766 0 1.4802046884880937 1.0457574905606752 0 0 [Y{I|L}][RV]EVEE{I|L};[Y{I|L}][RV]EEVE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}VE[TA]VE{I|L};{[QN]|[E{I|L}]|[KN]}E[{M(Oxidation (M))|F}V][TA]VE{I|L};{[QN]|[E{I|L}]|[KN]}EY[RV]VE{I|L};[Y{I|L}]EE[RV]VE{I|L};EE{I|L}Y[RV]VE{I|L} 5.2371;4.6919;3.4228;2.6449;2.4425;1.7895;1.7068 -;-;-;-;-;-;- 272 NaN NaN 131734.5 NaN 10235 3131 13362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13370 60.49 NaN 3295300 35 0 385180 0.327 + 27096 SYMGHFDLL 9 113 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13369 2308491.5 0.2741784474162164 -11 0.3087501525878906 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 164.5152109175784 6.8106583686994766E-09 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 92.035 0 0 8.386 8.386 95.824 0 0 0 40.636955994924264 9.009461452434238 9.009461452434238 23.974563837277373 0 2.579689690656103 2 1.6906140654642812 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}HG{M(Oxidation (M))|F}SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHEV{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}HG{M(Oxidation (M))|F}YS{I|L};{I|L}[YT]EHG{M(Oxidation (M))|F}[MT] 8.386;6.2015;3.976;3.5861;3.4814;3.4127;3.3649;2.9586;2.9303;2.9248 +;+;-;-;-;-;-;-;-;- + 4043 + NaN NaN 590504 NaN 10236 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13371 60.495 NaN 817250 35 0 103850 0.261 + 13696 KYPHYFPLL 9 96 589.3238196682227 1176.6330864032452 2 589.323974609375 MULTI HCD FTMS 0 0 0 13369 409329.0625 0.9385512416205196 1 -0.03277587890625 2 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 114.94377779790601 0.0021353177819039447 2 KYPHY{M(Oxidation (M))|F}P{I|L}{I|L} 9 0 + 66.794 0 0 5.6767 5.6767 83.886 0 0 0 1.1535656654828585 1.1535656654828585 1.1535656654828585 1.1535656654828585 0 2.774227503252014 0 0 0 + + KYPHY{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]Y{M(Oxidation (M))|F}{I|L}P{I|L};[{I|L}P][KC]E[HQ]P{I|L}{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}HY{M(Oxidation (M))|F}P{I|L}{I|L};[{I|L}P][KC]E[HQ]{I|L}P{I|L};KY[TA]WWP{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[WN]|[YH]}[YK]P{I|L}{I|L};KYP{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RD]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[WN]|[YH]}[YK]{I|L}P{I|L} 5.6767;5.5786;4.5428;4.4952;3.8078;3.4594;2.362;2.3465;1.4388;1.3107 +;-;-;-;-;-;-;-;-;- + 731 + NaN NaN 221517.1 NaN 10237 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13372 60.498 NaN 704130 35 0 79038 0.261 + 20350 NYSNIRFQF 9 84 594.7930318597923 1187.5715107863846 2 594.7935180664062 MULTI HCD FTMS 0 0 0 13369 347772.0625 0.7383867551586426 -1 0.022815704345703125 3 Unmodified _NYSNIRFQF_ ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 107.09958533191995 0.0034159042678574016 2 [YN]SN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 0 + 83.527 0 0 7.0334 7.0334 85.73 0 0 0 0.005288545306555648 0.005288545306555648 0.005288545306555648 0.005288545306555648 0 2.2134679910804405 2 0.7302046884880937 1.1237125054200234 + + [YN]SN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};NYSN[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[YN]SGG[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[YN]SN[R{I|L}]{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};NYSGG[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[YN]S{I|L}[RN]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};NYS{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}RQ{M(Oxidation (M))|F};[YN]S{I|L}[RN]{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};NYS{I|L}{M(Oxidation (M))|F}[KA]S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NY[Q{I|L}][YG]RQ{M(Oxidation (M))|F} 7.0334;7.033;6.2581;6.2581;6.2576;6.128;5.8084;5.3526;5.2522;4.0068 +;+;-;-;-;-;-;-;-;- + 1267 NaN NaN 190954.6 NaN 10238 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13373 60.501 NaN 1885100 35 0 333910 0.261 + 35990 YYYIWKKMIKF 11 100 528.2880654005096 1581.8423668017285 3 528.6222534179688 MULTI HCD FTMS 0 0 0 13369 282810.96875 0.43070692381548054 -4 0.11816787719726562 4 Unmodified _YYYIWKKMIKF_ ENSG00000118156|ENST00000391901|ZNF541;nc|ENSG00000118156|Q9H0D2-2|ZNF541 0.09484139111097674 0.41850472438158626 2 VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}N{I|L}S{I|L}WR{M(Oxidation (M))|F} 13 9 + 115.94 0 0 7.3292 7.3292 89.943 0 0 0 99.73892935249683 14.256472707169749 14.256472707169749 9.072459467631006 0 3.1989700043360187 2 0.3494850021680094 0.4247425010840047 VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}N{I|L}S{I|L}WR{M(Oxidation (M))|F};VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}GG{I|L}S{I|L}WR{M(Oxidation (M))|F};VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}N{I|L}[R{M(Oxidation (M))|F}]AAP{M(Oxidation (M))|F};VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}N{I|L}[R{M(Oxidation (M))|F}]W{[TV]|[{I|L}S]};[YV]AA[R{M(Oxidation (M))|F}]{I|L}N{[QD]|[EN]|[WG]|[KD]|[RS]}AAP{M(Oxidation (M))|F} 7.3292;6.7557;5.0156;4.8517;3.5004 -;-;-;-;- 3095 + NaN NaN 375187.7 NaN 10239 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13374 60.505 NaN 359880 35 0 29161 0.261 + 10474 IPDPLQHGNYL 11 75 633.8275423033657 1265.6405316735313 2 633.8279418945312 MULTI HCD FTMS 0 0 0 13369 152376.390625 0.6054923215494998 2 -0.052150726318359375 5 Unmodified _IPDPLQHGNYL_ ENSG00000134757|ENST00000257189|DSG3 60.899326713953855 0.03666125830841081 2 [DP]{I|L}PQ{I|L}HGNY{I|L} 11 4 + 71.79 0 0 5.6722 5.6722 84.677 0 0 0 11.174782515455036 59.613092405271296 11.174782515455036 3.0102999566398125 0 1.4247425010840047 0 0.3807196863200844 0.3494850021680094 [DP]{I|L}PQ{I|L}HGNY{I|L};[DP]{I|L}P{I|L}QHGNY{I|L};[DP]{I|L}PQ{I|L}HGGGY{I|L};[DP]{I|L}P[AG]{I|L}HGNY{I|L};[DP]{I|L}P{I|L}QHGGGY{I|L};[DP]{I|L}P{I|L}[AG]HGNY{I|L};[DP]{I|L}P[AG]{I|L}HGGGY{I|L};[DP]{I|L}P{I|L}[AG]HGGGY{I|L};[DP]{I|L}PQ{I|L}[YN]{[HG]|PP}{I|L};[DP]{I|L}[YN][RV]NY{I|L} 5.6722;5.4344;4.951;4.951;4.7131;4.7131;3.956;3.7181;3.5069;3.2701 -;-;-;-;-;-;-;-;-;- 982 NaN NaN 160546.9 NaN 10240 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13375 60.508 NaN 854820 35 0 262700 0.264 + 4600 EYLSRHWLF 9 59 417.54867420919254 1249.6241932277776 3 417.5488586425781 MULTI HCD FTMS 0 0 0 13369 106333.8203125 0.1108442025414001 -4 0.11816787719726562 6 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 4.189502756095605 0.319257502753388 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3596 0 0 1084.5452270185963 0 1084.5452270185963 0 6.532125137753438 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3596 + + 16 + NaN NaN 217136.6 NaN 10241 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13376 60.511 NaN 481900 35 0 73831 0.261 + 19625 NVDPDNVVL 9 63 492.75399314474805 983.4934333562961 2 492.75360107421875 MULTI HCD FTMS 0 0 0 13369 140338.90625 0.5457961037855383 -2 0.0556793212890625 7 Unmodified _NVDPDNVVL_ ENSG00000116717|ENST00000370986|GADD45A 57.72198328787511 0.020768266150574023 2 {[NV]|[RG]}DYYVV{I|L} 8 3 + 48.826 0 0 4.9645 4.9645 83.923 0 0 0 3.8192109784418236 14.383753548010496 3.8192109784418236 3.8192109784418236 0 1.6694451763165201 0 0.3054621874040891 0.8441876774005249 {[NV]|[RG]}DYYVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}YNV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[SA]|[TG]}{[{M(Oxidation (M))|F}D]|MM}VV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}YGGV{I|L} 4.9645;4.5762;3.6353;3.6344 -;-;-;- 120 NaN NaN 153110.9 NaN 10242 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13377 60.515 NaN 266390 35 0 20906 0.261 + 16824 LYECTGQFDF 10 51 611.7579772133546 1221.501401493509 2 611.7570190429688 MULTI HCD FTMS 0 0 0 13369 78366.671875 0.24956411205146584 -14 0.3940544128417969 8 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 22.65808497894818 0.29917593477267174 2 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 50.578 0 0 4.1406 0 0 305.1371327130875 0 305.1371327130875 0 41.62540112277682 0 0 0 2.274227503252014 0 0 0 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1406 - 145 NaN NaN 126807.5 NaN 10243 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13378 60.518 NaN 174890 35 0 19209 0.263 + 665 APLWCSLAI 9 64 487.2637542275623 972.5129555219246 2 487.263427734375 MULTI HCD FTMS 0 0 0 13369 24131.3203125 0.26716570089534153 3 -0.0815582275390625 9 Unmodified _APLWCSLAI_ REV__ENST00000358600.7_1_19:14492051-14492228:+|nuORF 11.640296217721598 0.25978676193971967 2 A{I|L} 2 -1 24.464 0 0 2.5155 0 0 770.3812123352175 0 770.3812123352175 0 8.010299956639813 0 0 0 0.5 0 0 0 A{I|L} 2.5155 + + 38 NaN NaN 110542.8 NaN 10244 3132 13369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13380 60.523 NaN 972550 35 0 363100 0.327 + 31957 VYPGDPLRF 9 59 532.2820805371144 1062.5496081410288 2 532.282470703125 MULTI HCD FTMS 0 0 0 13379 474232.5 1 0 0 1 Unmodified _VYPGDPLRF_ ENSG00000170892|ENST00000396388|TSEN34 15.248480904072842 0.22861284681709862 2 VYP 3 6 45.177 0 0 4.2518 0 0 0 700.3433299265915 700.3433299265915 43.58349385648225 0 0 0 0 0.5 1.6989700043360187 0 0 + VYP 4.2518 + + 60 + NaN NaN 233332.8 NaN 10245 3133 13379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13381 60.527 NaN 377340 35 0 37582 0.261 + 3297 EEFGRFASF 9 84 545.2537909370494 1088.4930289408987 2 545.25341796875 MULTI HCD FTMS 0 0 0 13379 189223.0625 0.3622898975894719 7 -0.1893463134765625 2 Unmodified _EEFGRFASF_ ENSG00000204287|ENST00000395388|HLA-DRA 51.629811660486645 0.02929079705179888 2 ESA[YN]{M(Oxidation (M))|F}AS{M(Oxidation (M))|F} 9 4 52.476 0 0 4.821 0 0 54.02971315259931 0 54.02971315259931 0 37.989993491523364 0 0 0 0.3494850021680094 0 0.8882104921644451 0 ESA[YN]{M(Oxidation (M))|F}AS{M(Oxidation (M))|F} 4.821 - 611 + NaN NaN 149133.1 NaN 10246 3133 13379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13382 60.531 NaN 488810 35 0 37611 0.261 + 15290 LPAGDALLQM 10 72 522.773432369215 NaN 0 522.7730102539062 PEAK HCD FTMS 0 0 0 13379 149783.765625 0.7168267734864692 -1 0.03277587890625 3 Oxidation (M) _LPAGDALLQM(Oxidation (M))_ ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 56.17704186161178 0.05992191178746987 2 {M(Oxidation (M))|F}QV{M(Oxidation (M))|F}{I|L}Q 6 8 39.646 0 0 3.7992 0 0 116.11749894784619 162.0231112115844 278.1406101594306 0 0 0 0 0 1.3494850021680094 0 0 0.7302046884880937 {M(Oxidation (M))|F}QV{M(Oxidation (M))|F}{I|L}Q 3.7992 - 206 + NaN NaN 161187.3 NaN 10247 3133 13379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13383 60.534 NaN 333080 35 0 32266 0.261 + 11595 IYTFPHASF 9 77 541.7689349227988 1081.5233169123976 2 541.7691650390625 MULTI HCD FTMS 0 0 0 13379 113217.6171875 0.15723866481467785 11 -0.3039588928222656 4 Unmodified _IYTFPHASF_ ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 64.23631603340823 0.01165516075559909 2 {I|L}YTTH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{M(Oxidation (M))|F} 9 5 + 60.618 0 0 5.6049 5.6049 89.104 0 0 0 38.26660305958029 3.7188453224604814 3.7188453224604814 11.232332902177248 0 1.3812033112643842 1.6989700043360187 0.6505149978319906 0 {I|L}YTTH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{M(Oxidation (M))|F};[Y{I|L}]TS[WH]Y{I|L};[Y{I|L}]TS{I|L}Y[WH];{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}T][WH]Y{I|L} 5.6049;4.5663;4.0519;0.17422 -;-;-;- 721 + NaN NaN 149754.4 NaN 10248 3133 13379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13384 60.538 NaN 199690 35 0 12883 0.261 -1 ETTGWFQMP 9 70 556.7390392309527 1111.4635255287053 2 556.7390747070312 MULTI HCD FTMS 0 0 0 13379 55208.12890625 0.4511796774811005 -9 0.2762565612792969 5 Oxidation (M) _ETTGWFQM(Oxidation (M))P_ ENSG00000198722|ENST00000635942|UNC13B 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 19.464 0 0 1.7512 0 0 867.2853871076187 0 867.2853871076187 0 3.0102999566398125 0 0 0 0 0 0 0 {I|L}{I|L} 1.7512 - 64 NaN NaN 117453.3 NaN 10249 3133 13379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13386 60.542 NaN 1237900 35 0 242650 0.327 + 15510 LPDMVVSHL 9 88 505.7705025796239 1009.5264522260478 2 505.7705078125 MULTI HCD FTMS 0 0 0 13385 578400.25 0.7186025212110105 1 -0.029407501220703125 1 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 136.33342141710068 0.00022087650154924235 2 {I|L}PDMVVSH{I|L} 9 0 + 109.12 0 0 10.809 10.809 97.09 0 0 0 71.33172148696637 8.256886463274284 8.256886463274284 17.501350298376636 0 2.8737125054200234 1.5228787452803376 1.2302046884880937 0 + + {I|L}PDMVVSH{I|L};[{I|L}P]DMVVSH{I|L};[DP]{I|L}MVVSH{I|L};[MD]P{I|L}VVSH{I|L};[{I|L}P]D{[ES]|[DT]|[{I|L}C]}{I|L}SH{I|L};[{I|L}P][EC]{I|L}VSH{I|L};[{I|L}P]DM[TA]{I|L}H{I|L};[MD]PV{I|L}VSH{I|L};[{I|L}P]DM[TA]H{I|L}{I|L};[MD]VP{I|L}VSH{I|L} 10.809;9.0755;6.7736;6.6373;6.2978;6.2884;6.057;5.8438;5.7279;5.699 +;+;-;-;-;-;-;-;-;- + 1284 + NaN NaN 278632.6 NaN 10250 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13387 60.547 NaN 865270 35 0 70559 0.261 + 34462 YPEVRIVLM 9 93 568.3125290308486 1134.6105051284972 2 568.3128662109375 MULTI HCD FTMS 0 0 0 13385 277087.15625 0.441654141959696 7 -0.18949127197265625 2 Oxidation (M) _YPEVRIVLM(Oxidation (M))_ ENSG00000135829|ENST00000367549|DHX9 67.83816525789305 0.009787749748478139 2 YPEVR{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 93.023 0 0 8.1987 8.1987 95.998 0 0 0 55.39111407821514 16.478174818886373 16.478174818886373 29.76558907899706 0 2.5233623702246373 1.3010299956639813 0.4247425010840047 0 + + YPEVR{I|L}V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EVR{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]R{I|L}V{I|L}{M(Oxidation (M))|F};[EP]YVR{I|L}V{I|L}{M(Oxidation (M))|F};[EP]VYR{I|L}V{I|L}{M(Oxidation (M))|F};[EP]V[R{I|L}]YV{I|L}{M(Oxidation (M))|F};[EP]V[R{I|L}]VY{I|L}{M(Oxidation (M))|F};[EP]V[R{I|L}]V{I|L}Y{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG][QP]{I|L}V{I|L}{M(Oxidation (M))|F} 8.1987;5.5753;3.993;3.8277;3.087;1.8072;1.6093;1.1686;0.74219 +;+;-;-;-;-;-;-;- + 936 + NaN NaN 226763.9 NaN 10251 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13388 60.55 NaN 1111700 35 0 278740 0.261 + 34717 YPVEIHEYL 9 91 581.7925293330666 1161.570505732933 2 581.792724609375 MULTI HCD FTMS 0 0 0 13385 268881.59375 0.07872418095006448 16 -0.4517250061035156 3 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 85.27202061508552 0.004649858145912257 2 YPVE{I|L}HEY{I|L} 9 0 + 77.731 0 0 6.6918 6.6918 88.799 0 0 0 9.09256854528806 9.09256854528806 9.09256854528806 9.09256854528806 0 2.5924778212679485 1.6989700043360187 0.5484550065040282 0 + + YPVE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HEY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HE{I|L}Y;YPYH{I|L}EVE{I|L};YPYH{I|L}E{I|L}D{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VE{I|L}HYE{I|L} 6.6918;5.9091;5.1316;4.8284;4.7564;4.7401 +;+;-;-;-;- + 965 + NaN NaN 260298.9 NaN 10252 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13389 60.554 NaN 242850 35 0 22110 0.261 + 35749 YYLQGGFSRF 10 56 619.304044653647 1236.593536374094 2 619.3037719726562 MULTI HCD FTMS 0 0 0 13385 110612.6328125 0.494554886814957 4 -0.11429595947265625 4 Unmodified _YYLQGGFSRF_ ENSG00000130829|ENST00000342782|DUSP9 30.7034409873982 0.22608124881558994 2 YY{I|L}QN{M(Oxidation (M))|F} 6 5 58.505 0 0 4.7311 0 0 0 405.1897371881469 405.1897371881469 37.53591878376909 0 0 0 0 1.8494850021680094 2 0 0 YY{I|L}QN{M(Oxidation (M))|F} 4.7311 - 123 + NaN NaN 133298.7 NaN 10253 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13390 60.557 NaN 537880 35 0 77389 0.264 + 7501 FWGFLFGLLFF 11 59 465.2505453536349 1392.7298066611047 3 465.2502136230469 MULTI HCD FTMS 0 0 0 13385 171431.765625 1 0 0 5 Unmodified _FWGFLFGLLFF_ REV__ENSG00000086205|ENST00000256999|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1;REV__nc|ENSG00000086205|Q04609-4|FOLH1;REV__nc|ENSG00000086205|Q04609-8|FOLH1 8.444304893310646 0.381886813817475 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.5991 0 0 967.4970539412413 0 967.4970539412413 0 29.20818753952375 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5991 + + 40 NaN NaN 182234.2 NaN 10254 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13391 60.56 NaN 392500 35 0 53243 0.261 + -1 FVKGCEKCKYN 11 58 478.2281971404026 1431.6627620214078 3 478.22760009765625 MULTI HCD FTMS 0 0 0 13385 72702.59375 0.6759933510127298 1 -0.029407501220703125 6 2 Carbamidomethyl (C) _FVKGC(Carbamidomethyl (C))EKC(Carbamidomethyl (C))KYN_ REV__ENSG00000198298|ENST00000361807|ZNF485;REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485 2.6312355333042263 0.4073809613003177 2 {M(Oxidation (M))|F}{[CA]|SS} 3 -1 8.072 0 0 0.56382 0 0 1092.5300434152662 0 1092.5300434152662 0 1.8740810491245004 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{[CA]|SS} 0.56382 - 20 NaN NaN 161084.7 NaN 10255 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13392 60.564 NaN 211470 35 0 74750 0.261 + 23515 RNFRKIYLF 9 40 419.58028146478347 1255.7190149945504 3 419.5802917480469 MULTI HCD FTMS 0 0 0 13385 40789.671875 0.09338061017531184 15 -0.4255561828613281 7 Unmodified _RNFRKIYLF_ ENST00000313695.11_2_1:155917458-155917590:-|nuORF 2.735195868890462 0.3302822318919627 2 {I|L}{M(Oxidation (M))|F} 2 7 22.959 0 0 1.8283 0 0 977.5577733947442 0 977.5577733947442 0 22.95880017344075 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.8283 + + 4 + NaN NaN 113000 NaN 10256 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13393 60.567 NaN 143770 35 0 22075 0.261 + 12672 KWFFQKLRF 9 55 433.91676727081136 NaN 0 433.9166259765625 PEAK HCD FTMS 0 0 0 13385 18707.255859375 0.24943332595476503 1 -0.029407501220703125 8 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 14.405379775768559 0.22495052155071432 2 K 1 8 3.0989 0 0 0.35792 0 0 303.4597419617415 431.24201379947505 734.7017557612165 0 0 0 0 0 0 0 0 0 + K 0.35792 + + 1 + NaN NaN 113211.5 NaN 10257 3134 13385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13395 60.572 NaN 3446800 35 0 429990 0.327 + 13322 KYMDVQFDF 9 102 604.7681496085214 1207.5217462838427 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13394 2717666.25 0.610491534117987 -6 0.163482666015625 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 160.6895995991744 8.89223804155775E-09 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 89.751 0 0 7.4326 7.4326 87.771 0 0 0 2.6716784481908746 52.517346757967545 2.6716784481908746 3.0153844027245924 0 2.305462187404089 0 1.6184151806525389 1.066901560044258 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.4326;7.1829;7.1137;7.0139;6.6701;6.4204;6.3511;6.2513;6.2273;6.2196 +;-;-;-;-;-;-;-;-;- + 6623 NaN NaN 611172.4 NaN 10258 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13396 60.576 NaN 1103600 35 0 87484 0.261 + 17036 LYIVHPTMF 9 100 568.7942762627684 1135.5739995923368 2 568.7943115234375 MULTI HCD FTMS 0 0 0 13394 297526.46875 0.7187791293867767 1 -0.026092529296875 2 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 92.8221339359638 0.0044520161739443126 2 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 97.807 0 0 8.613 8.613 96.82 0 0 0 54.049471895720984 16.478174818886373 16.478174818886373 33.7113751626007 0 2.1237125054200234 1.6989700043360187 0.6549471895720984 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[EC]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VH[DV]M{M(Oxidation (M))|F};[Y{I|L}]V{I|L}HPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[YQ]KK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[EC]{I|L}{M(Oxidation (M))|F};[Y{I|L}]V{I|L}H[DV]M{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HM][{I|L}A]Y{I|L}{M(Oxidation (M))|F} 8.613;5.6443;5.0485;4.9788;4.7839;4.4555;4.188;4.1183;0.4566 +;+;-;-;-;-;-;-;- + 999 + NaN NaN 258433.2 NaN 10259 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13397 60.58 NaN 421690 35 0 24827 0.261 + 34718 YPVEIHEYL 9 87 581.7925293330666 1161.570505732933 2 582.7693481445312 MULTI HCD FTMS 0 0 0 13394 21352.189453125 0.02800340852849145 17 -0.48134613037109375 3 Unmodified _YPVEIHEYL_ ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF 39.957323273324995 0.06554068735427583 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[DS]|[MA]|[CV]|TT}{I|L}EVE 9 5 29.375 0 0 2.5289 0 0 0 127.06985743395548 127.06985743395548 12.28933227713462 0 0 0 0 0.5994850021680094 1.5228787452803376 0.25 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[DS]|[MA]|[CV]|TT}{I|L}EVE 2.5289 - 1049 NaN NaN 160457.9 NaN 10260 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13398 60.583 NaN 138580 35 0 7458.6 0.261 + 23477 RLVSPSVHWY 10 50 622.332537227531 NaN 0 622.3009643554688 PEAK HCD FTMS 0 0 0 13394 39425.984375 1 0 0 4 Unmodified _RLVSPSVHWY_ ENST00000503513.5_1_5:39394445-39423859:-|nuORF 1.6526216038709556 0.33876987398426067 2 D{M(Oxidation (M))|F} 2 10 7.9588 0 0 0.64047 0 0 166.21749037127444 811.3179415338499 977.5354319051244 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 0.64047 - 10 + NaN NaN 110276.1 NaN 10261 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13399 60.586 NaN 193920 35 0 9377.6 0.261 -1 0 39 648.604248046875 NaN 0 648.604248046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 N 1 -1 2.2185 0 0 0.17129 0 0 604.0105717755874 574.1157930963499 1178.1263648719373 0 0 0 0 0 0 0 0 0 N 0.17129 - 2 + NaN NaN 113871.6 NaN 10262 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13400 60.59 NaN 116670 35 0 9850.9 0.264 + -1 KSDCSFWS 8 45 508.70916748046875 NaN 0 508.70916748046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _KSDC(Carbamidomethyl (C))SFWS_ REV__ENSG00000159433|ENST00000290607|STARD9 4.75600775471527 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.68904 0 0 129.99643109067375 768.3031099908811 898.2995410815549 0 0 0 0 0 0 0 0 0 {I|L} 0.68904 - 2 + NaN NaN 106880.9 NaN 10263 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13401 60.593 NaN 119360 35 0 19269 0.261 + 20327 NYQRKLEV 8 47 525.288412842475 NaN 0 525.3836669921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NYQRKLEV_ REV__ENSG00000136492|ENST00000259008|BRIP1;REV__nc|ENSG00000136492|Q9BX63-2|BRIP1 2.0597508629832335 0.38822285293237185 2 V 1 -1 5.4846 0 0 0.52305 0 0 131.15404511530375 815.3164766900999 946.4705218054037 0 0 0 0 0 0 0 0 0 V 0.52305 + + 1 + NaN NaN 105658 NaN 10264 3135 13394 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13403 60.598 NaN 18373000 35 0 3368000 0.327 + 24351 RYIDRIHIFF 10 78 460.5908872349479 1378.7508323050438 3 460.5912780761719 MULTI HCD FTMS 0 0 0 13402 9487862 1 0 0 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 46.4752305370441 0.09060834033530853 2 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 71.701 0 0 5.2004 0 0 547.2752724824448 0 547.2752724824448 0 62.23705952196511 0 0 0 2.7059771852360797 0 0 0.3494850021680094 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2004 + + 332 NaN NaN 839723.3 NaN 10265 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13404 60.602 NaN 3569300 35 0 1616600 0.261 + 30443 VLPNRPFGLF 10 90 580.3346872533688 1158.6548215735374 2 580.3348999023438 MULTI HCD FTMS 0 0 0 13402 2250798.75 1 0 0 2 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 32.30548876998284 0.21217886106551395 2 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}P 8 6 83.554 0 0 7.2113 0 0 0 290.11460291080317 290.11460291080317 60.595376907252984 0 0 0 0 2.3556270500406935 2 0 0.4247425010840047 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}P 7.2113 - 560 + NaN NaN 636625.1 NaN 10266 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13405 60.606 NaN 2042500 35 0 190790 0.261 + 29061 TYFRFQEEI 9 108 616.8012476011303 1231.5879422690605 2 616.8010864257812 MULTI HCD FTMS 0 0 0 13402 910282.375 0.7481916946483697 -1 0.026092529296875 3 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 139.78183599554657 1.962818552322152E-05 2 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 91.379 0 0 7.4196 7.4196 91.039 0 0 0 5.9981810915699185 5.9981810915699185 5.9981810915699185 9.208187539523749 0 2.344187677400525 2 0.6747425010840047 0.6989700043360187 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}REEQ{M(Oxidation (M))|F}{I|L};[YT]{M(Oxidation (M))|F}GV{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[NP]V{M(Oxidation (M))|F}QEE{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PG]GV{M(Oxidation (M))|F}QEE{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[SG]YE{I|L};[YT]{M(Oxidation (M))|F}REE[AG]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TATY{I|L};[YT]{M(Oxidation (M))|F}REEQ{I|L}{M(Oxidation (M))|F} 7.4196;6.672;4.483;4.1818;4.1742;4.1717;3.8172;3.7354;3.6028;3.5131 +;-;-;-;-;-;-;-;-;- + 4777 NaN NaN 404187.1 NaN 10267 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13406 60.609 NaN 725640 35 0 280370 0.264 -1 0 65 427.3027308391812 852.5909087451624 2 427.3025207519531 MULTI HCD FTMS 0 0 0 13402 314072.03125 0.3701455412295368 14 -0.3962249755859375 4 NaN NaN 2 YG{M(Oxidation (M))|F} 3 -1 17.201 0 0 2.0175 0 0 467.42267861996555 0 467.42267861996555 0 10.122840957453686 0 0 0 0 0 0 0 YG{M(Oxidation (M))|F} 2.0175 - 61 + NaN NaN 208903.4 NaN 10268 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13407 60.612 NaN 1011400 35 0 118580 0.261 + 646 APIRPDIVNF 10 106 571.3219731178132 1140.6293933024263 2 571.3219604492188 MULTI HCD FTMS 0 0 0 13402 561274.375 0.827189781610196 3 -0.09497833251953125 5 Unmodified _APIRPDIVNF_ ENSG00000174444|ENST00000307961|RPL4;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF 62.86856922530385 0.030989390483997268 2 AP{I|L}R[DP]{I|L}VN{M(Oxidation (M))|F} 10 0 + 68.925 0 0 6.0427 6.0427 91.445 0 0 0 52.72669403309017 11.089030598430583 11.089030598430583 19.64954184640309 0 2.5 0 0 1.4361818737241734 + + AP{I|L}R[DP]{I|L}VN{M(Oxidation (M))|F};A{[SA]|[TG]}{I|L}V[HA]{I|L}VN{M(Oxidation (M))|F};AP{I|L}R[DP]{I|L}VGG{M(Oxidation (M))|F};A[HA]V{I|L}{[SA]|[TG]}{I|L}VN{M(Oxidation (M))|F};A[HA]VA{[TV]|[{I|L}S]}{I|L}VN{M(Oxidation (M))|F};A[HA]AV{[TV]|[{I|L}S]}{I|L}VN{M(Oxidation (M))|F};A[Q{I|L}]H{[TV]|[{I|L}S]}{I|L}VN{M(Oxidation (M))|F};[QT]{I|L}V[HA]{I|L}VGG{M(Oxidation (M))|F};AP{I|L}R[DP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VV;AP{I|L}R{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VV 6.0427;4.32;4.3139;4.2737;4.1842;4.0947;3.6077;2.5615;0.98754;0.65872 +;-;-;-;-;-;-;-;-;- + 1084 + NaN NaN 246379.5 NaN 10269 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13408 60.616 NaN 2268500 35 0 304880 0.261 -1 MQYYKLHKMIW 11 131 533.5998041907897 1597.777583172569 3 533.6000366210938 MULTI HCD FTMS 0 0 0 13402 752460.8125 0.9381334240138975 -1 0.026092529296875 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MQYYKLHKM(Oxidation (M))IW_ ENST00000575475.2_1_17:5235261-5235390:+|nuORF 0.09484139111097674 0.41850472438158626 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}WASD{[VA]|[{I|L}G]}KEW 12 -1 64.714 0 0 4.0503 0 0 0 102.03493744677976 102.03493744677976 29.26435591279194 0 0 0 0 1.3252574989159953 1.6989700043360187 1.1237125054200234 0.3494850021680094 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}WASD{[VA]|[{I|L}G]}KEW 4.0503 - 5575 NaN NaN 430827.1 NaN 10270 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13409 60.619 NaN 413830 35 0 19668 0.261 + 12827 KYERIFTLL 9 82 591.8475221174236 1181.6804913016472 2 591.8296508789062 MULTI HCD FTMS 0 0 0 13402 78473.359375 0.7222294324281668 -1 0.026092529296875 7 Unmodified _KYERIFTLL_ ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000102786|Q9UL03-3|INTS6 15.248480904072842 0.22861284681709862 2 {I|L}QH{M(Oxidation (M))|F}S 5 8 14.741 0 0 1.2475 0 0 165.11460808678913 401.21879608369403 566.3334041704832 0 0 0 0 0 0 0 0.5866968715561641 0 {I|L}QH{M(Oxidation (M))|F}S 1.2475 - 249 + NaN NaN 158558.2 NaN 10271 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13410 60.622 NaN 420590 35 0 46665 0.261 + 4605 EYLSRHWLF 9 75 625.8199451367826 1249.6253373403651 2 625.820068359375 MULTI HCD FTMS 0 0 0 13402 238838.734375 1 0 0 8 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 49.74193281347159 0.03193181027262171 2 [W{I|L}]Y[VS]HW{I|L}{M(Oxidation (M))|F} 9 4 + 58.822 0 0 4.7072 4.7072 83.57 0 0 0 6.047575072713158 6.047575072713158 6.047575072713158 3.979400086720375 0 0.8494850021680094 1.3979400086720375 1.3494850021680094 0 [W{I|L}]Y[VS]HW{I|L}{M(Oxidation (M))|F};[W{I|L}]P[HD]H[VS]{I|L}{M(Oxidation (M))|F};EY{I|L}SRHW{I|L}{M(Oxidation (M))|F};[YT]KQQHW{I|L}{M(Oxidation (M))|F};EY{I|L}[KG]R[EC][RP];EY{I|L}[VP]W[HA][HV];EY{I|L}[KG]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]} 4.7072;4.3888;4.2233;3.9661;1.769;1.447;1.2061 -;-;+;-;-;-;- + 529 NaN NaN 154866.8 NaN 10272 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13411 60.626 NaN 280170 35 0 24250 0.261 + 35929 YYTLGDSACTF 11 65 620.7629310876104 1239.5113092420206 2 620.7634887695312 MULTI HCD FTMS 0 0 0 13402 112130.609375 0.47761011753373034 -5 0.13046646118164062 9 Unmodified _YYTLGDSACTF_ REV__ENSG00000127578|ENST00000319070|WFIKKN1;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant 8.745405648335112 0.3805662881914433 2 EQEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 57.339 0 0 4.6259 0 0 298.1313648908219 0 298.1313648908219 0 46.854188575580196 0 0 0 0.5 0 0.4247425010840047 0 EQEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6259 - 145 NaN NaN 126713.8 NaN 10273 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13412 60.629 NaN 487090 35 0 37633 0.261 + -1 YMDCTTCLE 9 75 576.2056376582378 1150.3967223832756 2 576.2059326171875 MULTI HCD FTMS 0 0 0 13402 54700.4765625 0.33625406362684424 -5 0.13046646118164062 10 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))DC(Carbamidomethyl (C))TTCLE_ REV__ENST00000559471.5_1_15:49283317-49283419:-|nuORF 2.302733041254933 0.33356062215410776 2 G 1 -1 5.4846 0 0 0.47675 0 0 536.0727000217506 554.2829683893186 1090.3556684110692 0 0 0 0 0 0 0 0 0 G 0.47675 - 38 + NaN NaN 166973.4 NaN 10274 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13413 60.632 NaN 384540 35 0 22942 0.261 + 12860 KYFLWEEKF 9 84 645.3319221401924 1288.6492913471848 2 645.3325805664062 MULTI HCD FTMS 0 0 0 13402 146333.359375 0.5497199668759343 -3 0.0748748779296875 11 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 80.23954778395604 0.005774863365960778 2 [YK]{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F} 9 0 + 78.637 0 0 6.1023 6.1023 91.994 0 0 0 2.3443705624775646 62.43887181533495 2.3443705624775646 24.92992819099939 0 2.6989700043360187 0 0.7059771852360797 0.3494850021680094 + + [YK]{M(Oxidation (M))|F}{I|L}WEEK{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{I|L}WE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[YK][KS][KC]EEK{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]KE[W{I|L}]YK{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}{I|L}[PA]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E;[{M(Oxidation (M))|F}E]K{M(Oxidation (M))|F}W{I|L}[YK]E;[YK]{M(Oxidation (M))|F}{I|L}[VS][HC][RH];[YK][KS]YYYK{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[SA]|[TG]}E[W{I|L}]YK{M(Oxidation (M))|F} 6.1023;4.1677;3.3608;1.9445;1.8768;1.7372;1.4016;1.1496;0.72518 +;-;-;-;-;-;-;-;- + 444 NaN NaN 147252.9 NaN 10275 3136 13402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13415 60.637 NaN 699400 35 0 83566 0.327 + 12731 KYAMMFAEL 9 85 560.2641780464887 1118.5138031597774 2 560.2645263671875 MULTI HCD FTMS 0 0 0 13414 371674.375 0.972909318361093 1 -0.019435882568359375 1 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 63.960520009940105 0.0120409805053046 2 [YK]AM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 9 0 + 62.015 0 0 5.5444 5.5444 84.213 0 0 0 2.38425597522167 3.5741562804892695 2.38425597522167 2.38425597522167 0 2.363364334130467 0 0 0 + + [YK]AM{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};[YV][KC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};[YK]A{M(Oxidation (M))|F}M{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}[HN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L};{[QN]|[E{I|L}]|[KN]}APDD{M(Oxidation (M))|F}AE{I|L};{[CP]|[EA]}{I|L}PDD{M(Oxidation (M))|F}AE{I|L};[VP][DV]DD{M(Oxidation (M))|F}AE{I|L};{[CP]|[EA]}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}C{I|L}K;{[CP]|[EA]}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}CK{I|L};{[QN]|[E{I|L}]|[KN]}K[NG][MD]ANK 5.5444;5.3313;5.2878;4.7253;4.372;4.1028;3.0513;2.3234;2.3018;2.155 +;-;+;-;-;-;-;-;-;- + 1527 NaN NaN 190475.8 NaN 10276 3137 13414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13416 60.642 NaN 692970 35 0 46496 0.261 + 1253 AYLSGMLRF 9 85 537.2760035353969 1072.5374541375936 2 537.2762451171875 MULTI HCD FTMS 0 0 0 13414 228898.53125 0.756503984767369 5 -0.13399887084960938 2 Oxidation (M) _AYLSGM(Oxidation (M))LRF_ ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF;nc|ENSG00000167881|Q9UHB9-2|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68 81.89019881105858 0.005240739447516426 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}S{M(Oxidation (M))|F} 9 3 + 74.715 0 0 6.9662 6.9662 87.59 0 0 0 23.590919918922012 59.141522612910364 23.590919918922012 4.771212547196626 0 1.9247425010840047 1.6989700043360187 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[WS]|[C(Carbamidomethyl (C)){I|L}]}TV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[YQ]{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YQ]S{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HV][PA]S{I|L}{[ES]|[DT]|[{I|L}C]};[YV]HA[PA]S{I|L}{[ES]|[DT]|[{I|L}C]} 6.9662;6.5213;5.508;5.153;3.9727;3.1623 -;-;-;-;-;- 479 NaN NaN 206101.1 NaN 10277 3137 13414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13417 60.645 NaN 1354300 35 0 120330 0.262 + 12862 KYFLWEEKF 9 83 430.55692817445544 NaN 0 430.5568542480469 PEAK HCD FTMS 0 0 0 13414 315052.3125 0.6944069230793073 -2 0.06545257568359375 3 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 39.212999716063884 0.08079931377422125 2 E 1 8 5.7133 0 0 0.66504 0 0 325.8512361396358 401.18284726852545 727.0340834081612 0 0 0 0 0 0 0 0.3494850021680094 0 + E 0.66504 + + 16 + NaN NaN 294760.5 NaN 10278 3137 13414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13418 60.648 NaN 550750 35 0 81983 0.261 + 5745 FPAGYMYPSM 10 79 598.2437384201628 1194.4729239071255 2 598.2440795898438 MULTI HCD FTMS 0 0 0 13414 194593.96875 0.6670897884491075 -2 0.06545257568359375 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 81.61307344734483 0.003824874751935527 2 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 5 + 64.869 0 0 5.4307 5.4307 90.29 0 0 0 3.1516688424750328 3.1516688424750328 3.1516688424750328 18.393943874995173 0 2.1747425010840047 1.3979400086720375 0.4247425010840047 0 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]A{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[HQ][RN]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.4307;3.8908;3.3852;1.6713;1.5656;1.5273;0.74868 -;-;-;-;-;-;- 251 NaN NaN 177587.6 NaN 10279 3137 13414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13419 60.652 NaN 367190 35 0 19477 0.261 + 22846 QYLTSVQQL 9 85 540.2903323143659 1078.5661116955316 2 540.8089599609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QYLTSVQQL_ ENSG00000182504|ENST00000341893|CEP97;nc|ENSG00000182504|Q8IW35-2|CEP97 41.95555342248728 0.056367691549927025 2 {I|L}[VS]QQ{I|L} 6 3 30.015 0 0 2.7829 0 0 392.1724801530786 0 392.1724801530786 0 8.249256301612746 0 0 0 1.2302046884880937 0 0.6109243748081782 0 {I|L}[VS]QQ{I|L} 2.7829 - 657 NaN NaN 149310.6 NaN 10280 3137 13414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13421 60.657 NaN 9185300 35 0 1065100 0.327 + 27097 SYMGHFDLL 9 113 549.7498597197784 1097.4851665063568 2 549.750244140625 MULTI HCD FTMS 0 0 0 13420 7594984 0.9020526700102665 -5 0.13367080688476562 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 188.57702930522862 4.893362302778831E-13 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 101.26 0 0 9.2262 9.2262 96.582 0 0 0 50.131492287727454 9.009461452434238 9.009461452434238 21.299895831303715 0 2.9489700043360187 2 2.0673851849885576 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}{I|L}D{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{M(Oxidation (M))|F}D{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{I|L}[YT]EHG{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L} 9.2262;7.2854;5.917;5.0082;4.3368;3.7859;3.7365;3.6392;3.5116;3.2903 +;+;-;-;-;-;-;-;-;- + 4120 + NaN NaN 652249.7 NaN 10281 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13422 60.661 NaN 1660200 35 0 554440 0.263 + 4601 EYLSRHWLF 9 62 417.54867420919254 1249.6241932277776 3 417.5486145019531 MULTI HCD FTMS 0 0 0 13420 600140.1875 0.6255964499440059 2 -0.055675506591796875 2 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 22.65808497894818 0.16459551161911185 2 {I|L}{M(Oxidation (M))|F} 2 7 20.969 0 0 1.678 0 0 971.4613341963308 0 971.4613341963308 0 4.771212547196626 0 0 0 0.3494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.678 + + 52 + NaN NaN 342737.8 NaN 10282 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13423 60.665 NaN 1295200 35 0 211070 0.261 + 35991 YYYIWKKMIKF 11 89 528.2880654005096 1581.8423668017285 3 528.6220703125 MULTI HCD FTMS 0 0 0 13420 247978.453125 0.37765874919938053 2 -0.055675506591796875 3 Unmodified _YYYIWKKMIKF_ ENSG00000118156|ENST00000391901|ZNF541;nc|ENSG00000118156|Q9H0D2-2|ZNF541 0.09484139111097674 0.41850472438158626 2 VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}N{I|L}S{I|L}WR{M(Oxidation (M))|F} 13 9 + 102.63 0 0 6.4878 6.4878 92.757 0 0 0 85.67596987705907 13.3425372500364 13.3425372500364 25.64407027334252 0 3.0924778212679485 2 0 0.4247425010840047 VYAA{[QD]|[EN]|[WG]|[KD]|[RS]}N{I|L}S{I|L}WR{M(Oxidation (M))|F};[YV]AAT[KQ]{I|L}S{I|L}{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YV]PV{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{I|L}{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YV]PV{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6.4878;4.8666;3.3143;3.0627 -;-;-;- 1102 + NaN NaN 280672.7 NaN 10283 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13424 60.668 NaN 416740 35 0 33016 0.261 + 20351 NYSNIRFQF 9 76 594.7930318597923 1187.5715107863846 2 594.7935791015625 MULTI HCD FTMS 0 0 0 13420 247557.515625 0.5256120614273859 5 -0.13078689575195312 4 Unmodified _NYSNIRFQF_ ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 76.82478488871298 0.006879825292024087 2 [YN]SNR{I|L}{M(Oxidation (M))|F}Q 8 3 64.818 0 0 5.458 0 0 0 162.05507537496433 162.05507537496433 43.84897306502516 0 0 0 0 1.9247425010840047 2 0.7614393726401688 0.7302046884880937 [YN]SNR{I|L}{M(Oxidation (M))|F}Q 5.458 - 890 NaN NaN 153408.6 NaN 10284 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13425 60.671 NaN 369800 35 0 50249 0.262 + 19626 NVDPDNVVL 9 63 492.75399314474805 983.4934333562961 2 492.7533264160156 MULTI HCD FTMS 0 0 0 13420 114356 0.44474523075812433 4 -0.11456298828125 5 Unmodified _NVDPDNVVL_ ENSG00000116717|ENST00000370986|GADD45A 24.990960013464015 0.14443998892849796 2 NV{I|L} 3 6 32.065 0 0 3.2603 0 0 639.2848988263687 0 639.2848988263687 0 12.60090614668492 0 0 0 0.5 0 0 0.3252574989159953 NV{I|L} 3.2603 - 96 NaN NaN 141016.1 NaN 10285 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13426 60.675 NaN 298790 35 0 41400 0.261 + 13697 KYPHYFPLL 9 57 589.3238196682227 1176.6330864032452 2 589.3245239257812 MULTI HCD FTMS 0 0 0 13420 213911.40625 0.49047779482486387 7 -0.19310379028320312 6 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 67.34385681178166 0.00994769994983633 2 KYPHY{M(Oxidation (M))|F} 6 3 50.851 0 0 4.3218 0 0 0 338.2080108785304 338.2080108785304 24.653500133247732 0 0 0 0 1.9247425010840047 0 0 0 + KYPHY{M(Oxidation (M))|F} 4.3218 + + 74 + NaN NaN 132824.8 NaN 10286 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13427 60.678 NaN 297820 35 0 196970 0.261 -1 0 50 564.3590743538424 563.3517978872424 1 564.359130859375 MULTI HCD FTMS 0 0 0 13420 195455.5625 0.34245341087446984 68 -1.4648513793945312 7 NaN NaN 2 Q 1 -1 1.9897 0 0 0.35319 0 0 83.08844447102986 349.18613611392817 432.274580584958 0 0 0 0 0 0 0 0 0 Q 0.35319 - 1 + NaN NaN 129913.6 NaN 10287 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13428 60.681 NaN 313540 35 0 31359 0.261 + -1 HDESCHMIGC 10 64 631.2241233151296 1260.4336936970592 2 631.2249145507812 MULTI HCD FTMS 0 0 0 13420 66481.90625 0.587755215934159 -5 0.13367080688476562 8 2 Carbamidomethyl (C),Oxidation (M) _HDESC(Carbamidomethyl (C))HM(Oxidation (M))IGC(Carbamidomethyl (C))_ REV__ENST00000340424.4_1_20:1651794-1678423:-|nuORF 0.45834013312273997 0.47287763746706196 2 [YN]A 3 -1 29.749 0 0 2.3602 0 0 0 909.268110771531 909.268110771531 11.535984316004217 0 0 0 0 0 1.6989700043360187 0 0.3807196863200844 [YN]A 2.3602 - 100 NaN NaN 148056 NaN 10288 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13429 60.685 NaN 321580 35 0 48617 0.264 -1 0 74 422.20856178348674 1263.6038559506603 3 422.5428771972656 MULTI HCD FTMS 0 0 0 13420 78225.9765625 0.718611141692404 4 -0.11456298828125 9 NaN NaN 2 D{M(Oxidation (M))|F} 2 -1 26.198 0 0 2.0733 0 0 983.4969910561059 0 983.4969910561059 0 21.593793813122062 0 0 0 0.5 0 0.5 0 D{M(Oxidation (M))|F} 2.0733 - 21 NaN NaN 145018.1 NaN 10289 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13430 60.688 NaN 297240 35 0 22989 0.261 + 26638 SWPRGVSEKEF 11 74 441.22111348519417 1320.6415110557825 3 441.2216491699219 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _SWPRGVSEKEF_ ENST00000561481.1_1_16:74497146-74501752:-|nuORF 14.170726826480097 0.3336124043171337 2 {[RE]|[WV]}HEWN 6 8 43.364 0 0 3.2835 0 0 0 466.2571305582906 466.2571305582906 22.566753121453402 0 0 0 0 0.75 1.6989700043360187 0 0 {[RE]|[WV]}HEWN 3.2835 - 165 NaN NaN 127076.1 NaN 10290 3138 13420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13432 60.693 NaN 490610 35 0 53284 0.327 + 16825 LYECTGQFDF 10 65 611.7579772133546 1221.501401493509 2 611.7579956054688 MULTI HCD FTMS 0 0 0 13431 227712.5625 0.7251664783458232 -7 0.20262908935546875 1 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 57.72198328787511 0.049706386133502735 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 76.036 0 0 6.2248 6.2248 89.741 0 0 0 7.939455175668755 52.57515625508539 7.939455175668755 9.503187623076954 0 2.3494850021680094 0 1.8098943791441968 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q[MT][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Q{[VA]|[{I|L}G]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]{[{M(Oxidation (M))|F}C]|[YS]}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}[MT]{M(Oxidation (M))|F}{[WT]|[RM]} 6.2248;5.4468;5.1628;4.3848;3.0268;2.9475;2.4327;2.3533;1.2637;1.1153 -;-;-;-;-;-;-;-;-;- 551 NaN NaN 163757.2 NaN 10291 3139 13431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13433 60.697 NaN 998540 35 0 136610 0.262 + -1 VLWTLCFYLFF 11 82 503.59306843662836 1507.757375910085 3 503.5932312011719 MULTI HCD FTMS 0 0 0 13431 238938.296875 0.026611562076081945 43 -0.9243927001953125 2 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 14.218169984304629 0.3331990305275193 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F}[HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 61.33 0 0 4.0677 0 0 548.3123646466812 0 548.3123646466812 0 54.34070099586343 0 0 0 1.8494850021680094 0 1.3494850021680094 0 {M(Oxidation (M))|F}T{M(Oxidation (M))|F}[HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0677 - 209 NaN NaN 233736.1 NaN 10292 3139 13431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13434 60.701 NaN 464650 35 0 64825 0.261 + 15511 LPDMVVSHL 9 62 505.7705025796239 1009.5264522260478 2 505.7705383300781 MULTI HCD FTMS 0 0 0 13431 195279.203125 0.24261422381076436 6 -0.15692138671875 3 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.92227651296345 0.008466197542043549 2 {I|L}PDMVVHS{I|L} 9 2 + 89.351 0 0 8.8508 8.8508 89.013 0 0 0 31.706962271689747 1.0083376013968604 1.0083376013968604 1.0083376013968604 0 2.128144697160131 1.5228787452803376 0.4247425010840047 0 {I|L}PDMVVHS{I|L};{I|L}PDMVVSH{I|L};[{I|L}P]DMVVSH{I|L};[DP]{I|L}MVVSH{I|L};[{I|L}P][EC]{I|L}VSH{I|L};[DP]M{I|L}VVSH{I|L};[DP]MV{I|L}VSH{I|L};[{I|L}P]{[QS]|[NT]}K{M(Oxidation (M))|F}[YK];{I|L}{[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}VHS{I|L};{I|L}{[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}VSH{I|L} 8.8508;8.7509;5.7754;4.0698;4.0203;3.649;3.1031;2.8563;2.8083;2.7084 -;+;+;-;-;-;-;-;-;- + 221 + NaN NaN 176825.1 NaN 10293 3139 13431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13435 60.704 NaN 167770 35 0 42265 0.261 + 10746 IRLRKNMIVM 10 34 637.3857145947899 NaN 0 637.385986328125 PEAK HCD FTMS 0 0 0 13431 61554.9765625 0.17908046759715643 67 -1.4286689758300781 4 Unmodified _IRLRKNMIVM_ REV__ENSG00000196184|ENST00000423932|OR10J1;REV__nc|ENSG00000196184|P30954|OR10J1 0.45834013312273997 0.33979201340002624 2 T 1 -1 6.9897 0 0 0.54918 0 0 405.31163807454215 763.3849581354124 1168.6965962099546 0 0 0 0 0 0 0 0 0 T 0.54918 - 2 + NaN NaN 113496.8 NaN 10294 3139 13431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13436 60.707 NaN 288980 35 0 24567 0.261 + -1 HTVRHGCDM 9 82 556.7390392309527 1111.4635255287053 2 556.739501953125 MULTI HCD FTMS 0 0 0 13431 113902.1171875 0.9308469878473452 -3 0.09497833251953125 5 Carbamidomethyl (C) _HTVRHGC(Carbamidomethyl (C))DM_ REV__ENST00000415776.1_1_Y:19869357-19869702:-|nuORF 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F}DM 3 -1 26.017 0 0 2.3408 0 0 700.3556896906179 0 700.3556896906179 0 5.048181095651856 0 0 0 1 0 0.3252574989159953 0 {M(Oxidation (M))|F}DM 2.3408 - 89 + NaN NaN 131405.7 NaN 10295 3139 13431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13438 60.712 NaN 5882600 35 0 748470 0.327 + 13323 KYMDVQFDF 9 116 604.7681496085214 1207.5217462838427 2 604.7686157226562 MULTI HCD FTMS 0 0 0 13437 4337506 0.974369348033804 -1 0.01949310302734375 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 160.6895995991744 8.89223804155775E-09 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 93.36 0 0 7.7315 7.7315 87.577 0 0 0 1.3071968632008435 2.7201361225296097 1.3071968632008435 1.3071968632008435 0 2.305462187404089 0 1.6936726795685342 1.1307196863200843 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]DKVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.7315;7.6233;7.5646;7.4163;6.969;6.8607;6.8021;6.6537;6.529;6.4857 +;-;-;-;-;-;-;-;-;- + 11964 NaN NaN 817637.5 NaN 10296 3140 13437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13439 60.717 NaN 499420 35 0 50603 0.261 + 35150 YVGVEALKNF 10 93 570.308415968268 1138.602279003336 2 571.322021484375 MULTI HCD FTMS 0 0 0 13437 21365.56640625 0.8016327287948392 3 -0.07511138916015625 2 Unmodified _YVGVEALKNF_ REV__ENST00000487944.5_1_1:26759436-26764820:+|nuORF 18.1463463914782 0.3413772152514074 2 YNV{I|L}[DP]A 7 -1 35.604 0 0 3.127 0 0 0 363.2132662408813 363.2132662408813 -3.6227313277985473 0 -3.6227313277985473 0 0 0 0 0 0.3252574989159953 YNV{I|L}[DP]A 3.127 - 441 + NaN NaN 161670 NaN 10297 3140 13437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13440 60.72 NaN 294540 35 0 39202 0.261 + 19627 NVDPDNVVL 9 61 492.75399314474805 983.4934333562961 2 492.75347900390625 MULTI HCD FTMS 0 0 0 13437 76885.2734375 0.299016743125524 6 -0.17361831665039062 3 Unmodified _NVDPDNVVL_ ENSG00000116717|ENST00000370986|GADD45A 34.93206674587334 0.08860942999206235 2 {[NV]|[RG]}DYYVV{I|L} 8 3 + 35.838 0 0 3.6439 3.6439 88.527 0 0 0 4.397737521010825 16.017281225732418 4.397737521010825 25.243500300354135 0 1.5752574989159953 0 0 0.3252574989159953 {[NV]|[RG]}DYYVV{I|L};[KG][RD][C(Carbamidomethyl (C))H]V{I|L} 3.6439;1.0772 -;- 57 NaN NaN 134602.8 NaN 10298 3140 13437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13441 60.724 NaN 181450 35 0 22635 0.262 + 30141 VGGRSGKF 8 52 404.22772006082965 NaN 0 404.21539306640625 PEAK HCD FTMS 0 0 0 13437 6331.7724609375 0.6347944842289615 -1 0.01949310302734375 4 Unmodified _VGGRSGKF_ ENST00000156084.8_1_X:48779915-48780236:-|nuORF 9.347437153973935 0.38822285293237185 2 {I|L}{I|L}GK 4 6 14.949 0 0 1.8536 0 0 230.07756739100063 162.05613123111564 392.1336986221163 0 0 0 0 0 0 0 0 0 {I|L}{I|L}GK 1.8536 - 43 + NaN NaN 119855.5 NaN 10299 3140 13437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13442 60.727 NaN 77848 35 0 7617.8 0.261 + 23877 RSSGRQQWQS 10 43 407.2040867409343 NaN 0 406.8233947753906 PEAK HCD FTMS 0 0 0 13437 6887.60205078125 0.2092317545540933 -16 0.4656028747558594 5 Unmodified _RSSGRQQWQS_ ENSG00000085514|ENST00000198536|PILRA;ENST00000474013.1_1_7:99971734-99973868:+|nuORF;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-2|PILRA;nc|ENSG00000085514|Q9UKJ1-3|PILRA;nc|ENSG00000085514|Q9UKJ1-4|PILRA 2.9952420565917617 0.3376207769591857 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99980.9 NaN 10300 3140 13437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13444 60.732 NaN 7478000 35 0 1392200 0.327 + 24352 RYIDRIHIFF 10 66 460.5908872349479 1378.7508323050438 3 460.5911560058594 MULTI HCD FTMS 0 0 0 13443 3742029.25 0.39440173666100964 5 -0.1540985107421875 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 39.922945255915025 0.1460754433722493 2 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 71.943 0 0 5.218 0 0 547.2755277740499 0 547.2755277740499 0 53.52690962719841 0 0 0 2.3494850021680094 0 0 0.7302046884880937 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.218 + + 374 NaN NaN 712815.8 NaN 10301 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13445 60.736 NaN 1452200 35 0 649150 0.261 + 30444 VLPNRPFGLF 10 77 580.3346872533688 1158.6548215735374 2 580.3347778320312 MULTI HCD FTMS 0 0 0 13443 633294.3125 0.2813642545785135 5 -0.1540985107421875 2 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 30.636539890814138 0.2266618088935899 2 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}P 8 6 76.336 0 0 6.5883 0 0 0 290.11432825260005 290.11432825260005 53.148350154927826 0 0 0 0 2.110924374808178 1.5228787452803376 0 0.4247425010840047 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}P 6.5883 - 341 + NaN NaN 305480.4 NaN 10302 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13446 60.74 NaN 631220 35 0 56644 0.261 + 3816 EPEQFVVVM 9 79 547.266466701482 1092.518380469764 2 547.2664794921875 MULTI HCD FTMS 0 0 0 13443 255579.328125 0.5120357094157655 -3 0.0751953125 3 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 52.268347100219714 0.028397529699942435 2 VVV{M(Oxidation (M))|F} 4 5 51.938 0 0 4.754 0 0 630.2676029861248 0 630.2676029861248 0 33.99288766643714 0 0 0 2 0 0 0 + VVV{M(Oxidation (M))|F} 4.754 + + 249 + NaN NaN 193406.4 NaN 10303 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13447 60.743 NaN 439150 35 0 57597 0.261 + 15512 LPDMVVSHL 9 80 505.7705025796239 1009.5264522260478 2 505.7703552246094 MULTI HCD FTMS 0 0 0 13443 185656.078125 0.2306584857436928 8 -0.23606491088867188 4 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.92227651296345 0.008466197542043549 2 {I|L}PDMVVHS{I|L} 9 2 + 90.213 0 0 8.9362 8.9362 91.592 0 0 0 29.488474775526186 7.028937514676485 7.028937514676485 7.028937514676485 0 2.135151878060192 1.3010299956639813 0.4247425010840047 0 {I|L}PDMVVHS{I|L};{I|L}PDMVVSH{I|L};[{I|L}P]DMVVHS{I|L};[DP]{I|L}MVVHS{I|L};[{I|L}P][EC]{I|L}VHS{I|L};[DP]M{I|L}VVHS{I|L};[DP]MV{I|L}VHS{I|L} 8.9362;8.2399;5.6706;4.061;3.4936;3.3995;2.606 -;+;-;-;-;-;- + 232 + NaN NaN 175772 NaN 10304 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13448 60.746 NaN 247590 35 0 30184 0.261 + 7502 FWGFLFGLLFF 11 66 465.2505453536349 1392.7298066611047 3 465.2505187988281 MULTI HCD FTMS 0 0 0 13443 32807.97265625 0.1913762746165498 7 -0.20987701416015625 5 Unmodified _FWGFLFGLLFF_ REV__ENSG00000086205|ENST00000256999|FOLH1;REV__nc|ENSG00000086205|Q04609-3|FOLH1;REV__nc|ENSG00000086205|Q04609-4|FOLH1;REV__nc|ENSG00000086205|Q04609-8|FOLH1 8.444304893310646 0.381886813817475 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.5991 0 0 967.496215279447 0 967.496215279447 0 29.20818753952375 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5991 + + 24 NaN NaN 120475.5 NaN 10305 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13449 60.75 NaN 376130 35 0 15700 0.261 + 20175 NYKLTSITF 9 79 543.7955680711398 NaN 0 543.7957763671875 PEAK HCD FTMS 0 0 0 13443 39146.62109375 0.3477377537333403 -2 0.039012908935546875 6 Unmodified _NYKLTSITF_ ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH;nc|ENSG00000134444|Q9P260|RELCH 43.77239144664712 0.06617713280084607 2 TTVN 4 8 32.528 0 0 2.9964 0 0 165.08031970647738 502.2808016412719 667.3611213477493 0 0 0 0 0 1.5 0 0 0.3807196863200844 TTVN 2.9964 - 94 + NaN NaN 141903.6 NaN 10306 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13450 60.753 NaN 599570 35 0 96138 0.261 + 7045 FQDVLLYF 8 68 522.773432369215 NaN 0 522.773681640625 PEAK HCD FTMS 0 0 0 13443 37357.69921875 0.17878438884290504 7 -0.20987701416015625 7 Unmodified _FQDVLLYF_ ENSG00000139826|ENST00000375898|ABHD13 19.438996006549623 0.38500361301801034 2 {M(Oxidation (M))|F}QVYPQ 6 5 37.356 0 0 3.5798 0 0 116.1160987082687 162.0229891412719 278.1390878495406 0 0 0 0 0 0.8494850021680094 0 0 1.0189301784845295 {M(Oxidation (M))|F}QVYPQ 3.5798 - 340 + NaN NaN 181980.1 NaN 10307 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13451 60.756 NaN 183330 35 0 8377.7 0.261 + 35737 YYLNGHWTI 9 55 583.7859473759911 1165.557341818782 2 583.7864379882812 MULTI HCD FTMS 0 0 0 13443 41425.4453125 0.6017893689485063 2 -0.055591583251953125 8 Unmodified _YYLNGHWTI_ ENSG00000100767|ENST00000644200|PAPLN;nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;nc|ENSG00000100767|O95428-6|PAPLN 13.90604991867851 0.24021115267848145 2 YY{I|L} 3 6 38.952 0 0 3.342 0 0 0 723.3243502252561 723.3243502252561 20.993624753846092 0 0 0 0 0.8494850021680094 2 0 0 + YY{I|L} 3.342 + + 36 + NaN NaN 128981.6 NaN 10308 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13452 60.76 NaN 224500 35 0 19355 0.262 + 18179 MPDLDLHL 8 63 485.23917546112204 968.4637979890441 2 485.2392883300781 MULTI HCD FTMS 0 0 0 13443 49785.49609375 0.5944595627531392 6 -0.18365859985351562 9 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 44.40701690623563 0.17431628565839993 2 {M(Oxidation (M))|F}PD{I|L}D{I|L}H{I|L} 8 0 + 45.112 0 0 4.6581 4.6581 89.418 0 0 0 29.539106406846045 8.979400086720375 8.979400086720375 21.22486274231747 0 1.1747425010840047 0 0 0 + + {M(Oxidation (M))|F}PD{I|L}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{I|L}DPE 4.6581;2.4665 +;- + 81 + NaN NaN 127744.7 NaN 10309 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13453 60.763 NaN 137150 35 0 5913.3 0.261 + 20364 NYSYLHCEW 9 48 607.7498485760221 NaN 0 607.7499389648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _NYSYLHCEW_ CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 10.073929032068715 0.24642998803896465 2 ST 2 8 10.261 0 0 0.84557 0 0 277.1054746998597 745.3008516900999 1022.4063263899595 0 0 0 0 0 0.3807196863200844 0 0 0 ST 0.84557 - 24 + NaN NaN 109486.5 NaN 10310 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13454 60.766 NaN 157970 35 0 6978.1 0.261 + 21383 PVEQFYRSLQ 10 47 633.8275423033657 1265.6405316735313 2 634.3283081054688 MULTI HCD FTMS 0 0 0 13443 26790.7734375 0.1625157268590773 7 -0.20987701416015625 11 Unmodified _PVEQFYRSLQ_ CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 5.296884461304476 0.4472664531305844 2 {I|L}[DP]Q 4 9 23.94 0 0 1.8915 0 0 0 809.3848971002561 809.3848971002561 16.95046257204389 0 0 0 0 0.3494850021680094 0 0 0.4247425010840047 {I|L}[DP]Q 1.8915 - 14 + NaN NaN 112829.4 NaN 10311 3141 13443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13456 60.771 NaN 1962000 35 0 214880 0.327 + 29062 TYFRFQEEI 9 108 616.8012476011303 1231.5879422690605 2 616.8009643554688 MULTI HCD FTMS 0 0 0 13455 750062.9375 0.6165019511676902 5 -0.14429092407226562 1 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 128.57297698046145 0.0006915168155602875 2 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 93.202 0 0 7.5676 7.5676 91.291 0 0 0 11.711066313550035 11.711066313550035 11.711066313550035 9.208187539523749 0 2.360924374808178 2 0.6139829889124311 1.0044321917401078 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[R{M(Oxidation (M))|F}]YT{M(Oxidation (M))|F}QEE{I|L};[R{M(Oxidation (M))|F}]YT{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}REEQ{M(Oxidation (M))|F}{I|L};[YT]{M(Oxidation (M))|F}GV{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YT]{M(Oxidation (M))|F}REE[AG]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NQ{M(Oxidation (M))|F}[SG]YE{I|L};[YT]{M(Oxidation (M))|F}[TA]{[QN]|[E{I|L}]|[KN]}Q{M(Oxidation (M))|F}{I|L};{I|L}{M(Oxidation (M))|F}Y[SG]{M(Oxidation (M))|F}QN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.5676;6.82;4.8991;4.1515;4.1203;4.0453;3.3726;2.9123;2.8236;2.1683 +;-;-;-;-;-;-;-;-;- + 3000 NaN NaN 386660.9 NaN 10312 3142 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13457 60.776 NaN 1333100 35 0 166280 0.261 -1 MQYYKLHKMIW 11 117 533.5998041907897 1597.777583172569 3 533.6000366210938 MULTI HCD FTMS 0 0 0 13455 336735.25 0.41982597342061023 5 -0.14429092407226562 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MQYYKLHKM(Oxidation (M))IW_ ENST00000575475.2_1_17:5235261-5235390:+|nuORF 0.09484139111097674 0.41850472438158626 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}W{[SA]|[TG]}D 7 -1 45.155 0 0 2.8261 0 0 0 715.37888560703 715.37888560703 16.17046012758685 0 0 0 0 1.7614393726401687 1.6989700043360187 0.5356668758921829 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}W{[SA]|[TG]}D 2.8261 - 583 NaN NaN 286919.5 NaN 10313 3142 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13458 60.779 NaN 356510 35 0 19361 0.261 + 12828 KYERIFTLL 9 78 591.8475221174236 1181.6804913016472 2 591.8302001953125 MULTI HCD FTMS 0 0 0 13455 40102.7578125 0.36908566479636723 5 -0.14429092407226562 3 Unmodified _KYERIFTLL_ ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000102786|Q9UL03-3|INTS6 20.580933911654288 0.18254163597178805 2 [YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L} 9 5 27.457 0 0 2.3236 0 0 0 162.09203584011382 162.09203584011382 5.775006193212281 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 [YK]{I|L}S{[QV]|[N{I|L}]|[RA]|[KV]}GQ{I|L} 2.3236 - 369 NaN NaN 137597.4 NaN 10314 3142 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13459 60.783 NaN 136310 35 0 5363.6 0.261 + 16344 LRQYRPREY 9 49 640.8485806022994 NaN 0 640.7813720703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LRQYRPREY_ ENSG00000145217|ENST00000398516|SLC26A1;nc|ENSG00000145217|Q9H2B4-2|SLC26A1 1.844237919475145 0.28630992268396543 2 {M(Oxidation (M))|F}YS 3 8 16.198 0 0 1.2658 0 0 409.2435346403425 470.25348840885005 879.4970230491925 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}YS 1.2658 - 17 + NaN NaN 116293.8 NaN 10315 3142 13455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13461 60.787 NaN 10603000 35 0 1263500 0.327 + 27098 SYMGHFDLL 9 111 549.7498597197784 1097.4851665063568 2 549.7503662109375 MULTI HCD FTMS 0 0 0 13460 8419668 1 0 0 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 180.00974506902125 1.0762292318080308E-12 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 100.2 0 0 9.1304 9.1304 97.034 0 0 0 46.19280313679916 9.889917747712644 9.889917747712644 27.27604879663963 0 2.6549471895720984 2 1.9040820565447216 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}G{I|L}{I|L}[HD]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L} 9.1304;6.6451;5.5036;4.0799;3.8424;3.6564;3.5286;3.5072;3.346;3.2072 +;+;-;-;-;-;-;-;-;- + 2911 + NaN NaN 705059.9 NaN 10316 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13462 60.792 NaN 812420 35 0 85583 0.261 + 12928 KYGPVFSF 8 83 472.7475320309645 943.4805111287291 2 472.7473449707031 MULTI HCD FTMS 0 0 0 13460 360062.03125 0.6910677310235175 -3 0.07511138916015625 2 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 100.37149154755038 0.04048324805386337 2 [YK]GPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 0 + 64.538 0 0 6.8404 6.8404 93.514 0 0 0 1.3894059535415835 33.067211451244575 1.3894059535415835 27.384255975221677 0 2.4247425010840047 0 0.4247425010840047 0.48965182871044377 + + [YK]GPV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QA]V{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.8404;3.9379 +;- + 439 NaN NaN 212258.6 NaN 10317 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13463 60.795 NaN 933110 35 0 297100 0.261 + 4602 EYLSRHWLF 9 64 417.54867420919254 1249.6241932277776 3 417.5487060546875 MULTI HCD FTMS 0 0 0 13460 166827.671875 0.1739040335095431 7 -0.20664215087890625 3 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 7.101721422024254 0.29718071671418667 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3596 0 0 1084.5452422773853 0 1084.5452422773853 0 6.532125137753438 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3596 + + 40 + NaN NaN 235508.6 NaN 10318 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13464 60.799 NaN 1882700 35 0 373050 0.261 + 4593 EYLRQIFRL 9 69 413.2398812716732 1236.6978144152197 3 413.2398376464844 MULTI HCD FTMS 0 0 0 13460 616036.25 0.6520978306188226 -2 0.055591583251953125 4 Unmodified _EYLRQIFRL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 34.93206674587334 0.08860942999206235 2 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F}[R{I|L}] 9 0 + 40.058 0 0 3.2391 3.2391 84.886 0 0 0 15.475169860216074 4.762036441594191 4.762036441594191 9.208187539523749 0 0.25 0 0 1.1237125054200234 + + [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F}[R{I|L}];[YE]{I|L}R[AG]{I|L}{M(Oxidation (M))|F}[R{I|L}] 3.2391;2.4946 +;- + 174 + NaN NaN 371428.4 NaN 10319 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13465 60.802 NaN 651690 35 0 56273 0.261 + 12732 KYAMMFAEL 9 86 560.2641780464887 1118.5138031597774 2 560.2643432617188 MULTI HCD FTMS 0 0 0 13460 218531.734375 0.5720371783259168 7 -0.20664215087890625 5 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 51.629811660486645 0.02929079705179888 2 A{M(Oxidation (M))|F}M{M(Oxidation (M))|F}CK{I|L} 7 4 40.175 0 0 3.5918 0 0 260.1371021955094 0 260.1371021955094 0 0.5604792920961188 0 0 0 1.579689690656103 0 0 0 A{M(Oxidation (M))|F}M{M(Oxidation (M))|F}CK{I|L} 3.5918 - 725 NaN NaN 190513.5 NaN 10320 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13466 60.805 NaN 1051400 35 0 86473 0.263 + 12863 KYFLWEEKF 9 70 430.55692817445544 NaN 0 430.556884765625 PEAK HCD FTMS 0 0 0 13460 229380.46875 0.505577579339865 4 -0.1280670166015625 6 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 28.233623360808718 0.13213237831166144 2 W 1 8 5.4846 0 0 0.63841 0 0 121.76213053456532 548.2360433093571 669.9981738439225 0 0 0 0 0 0 0 0 0 + W 0.63841 + + 24 + NaN NaN 244291.1 NaN 10321 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13467 60.809 NaN 547840 35 0 96468 0.261 + 5746 FPAGYMYPSM 10 82 598.2437384201628 1194.4729239071255 2 598.243896484375 MULTI HCD FTMS 0 0 0 13460 213270.65625 0.731115552419786 4 -0.1280670166015625 7 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 117.59872219059416 4.1811813134037123E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 2 + 64.759 0 0 5.4216 5.4216 83.166 0 0 0 6.883797645430505 54.58175076054957 6.883797645430505 0.4833247972062793 0 1.8494850021680094 0 0.7614393726401688 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}HH{[QD]|[EN]|[WG]|[KD]|[RS]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QY[YE]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AGY[YE]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PY[W{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F} 5.4216;5.3811;4.319;4.0194;3.9527;1.36;0.87508;0.83462;0.80512 -;+;-;-;-;-;-;-;- + 296 NaN NaN 173108.8 NaN 10322 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13468 60.812 NaN 598910 35 0 203010 0.264 -1 0 63 427.3027308391812 852.5909087451624 2 427.3026123046875 MULTI HCD FTMS 0 0 0 13460 207505.09375 0.24455245164075567 21 -0.6013107299804688 8 NaN NaN 2 Y{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{M(Oxidation (M))|F} 6 -1 19.887 0 0 2.3326 0 0 86.32132974301244 0 86.32132974301244 0 12.897423792133921 0 0 0 0 0 0.28872548999643577 0 Y{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{M(Oxidation (M))|F} 2.3326 - 43 + NaN NaN 177030.9 NaN 10323 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13469 60.815 NaN 345030 35 0 23354 0.261 + 12861 KYFLWEEKF 9 82 645.3319221401924 1288.6492913471848 2 645.3318481445312 MULTI HCD FTMS 0 0 0 13460 212188.765625 0.7971142172162026 4 -0.1280670166015625 9 Unmodified _KYFLWEEKF_ ENSG00000154016|ENST00000284154|GRAP 42.067849460122346 0.055852189828314365 2 {I|L}WEEK{M(Oxidation (M))|F} 6 3 56.235 0 0 4.3639 0 0 438.22758681465 0 438.22758681465 0 27.36108164983278 0 0 0 1.6989700043360187 0 0.3494850021680094 0 + {I|L}WEEK{M(Oxidation (M))|F} 4.3639 + + 220 NaN NaN 138765.2 NaN 10324 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13470 60.819 NaN 386520 35 0 30224 0.261 + 16433 LSMGSASYYDF 11 67 620.7629310876104 1239.5113092420206 2 620.7635498046875 MULTI HCD FTMS 0 0 0 13460 195531.796875 0.8328498793289487 2 -0.06231689453125 10 Unmodified _LSMGSASYYDF_ REV__ENSG00000157103|ENST00000287766|SLC6A1 13.042465956692817 0.3434429782671734 2 D{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 8 -1 66.988 0 0 5.4044 0 0 165.07811545625833 0 165.07811545625833 0 52.71824680203817 0 0 0 0.1549471895720985 0 2.048455006504028 0.3807196863200844 D{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 5.4044 - 268 + NaN NaN 151970.6 NaN 10325 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13471 60.822 NaN 405380 35 0 62428 0.261 + 34124 YNSWFVLIM 9 71 594.7930318597923 1187.5715107863846 2 594.7910766601562 MULTI HCD FTMS 0 0 0 13460 145001.625 0.3078662460889316 10 -0.3018951416015625 11 Oxidation (M) _YNSWFVLIM(Oxidation (M))_ REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3 52.268347100219714 0.028397529699942435 2 [YN][KG]T{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 10 -1 + 66.621 0 0 5.6099 5.6099 90.804 0 0 0 18.65279269351241 24.38424994129406 18.65279269351241 20.400990676322905 0 1.1989700043360187 1.6989700043360187 0.3494850021680094 0.3054621874040891 [YN][KG]T{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}T{I|L}A{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{[RE]|[WV]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]{[RE]|[WV]}{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]{I|L}[KA]S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SER{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{I|L}][DV]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]S[RN]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]RRS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]WW{I|L}{M(Oxidation (M))|F} 5.6099;3.892;2.124;2.0677;1.6559;1.4259;1.3205;1.2857;1.1918;0.97438 -;-;-;-;-;-;-;-;-;- 381 NaN NaN 145796.4 NaN 10326 3143 13460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13473 60.827 NaN 493620 35 0 315480 0.327 -1 0 58 490.2858495496192 489.2785730830192 1 490.2860107421875 MULTI HCD FTMS 0 0 0 13472 309688 0.40642443208121454 7 -0.19665908813476562 1 NaN NaN 2 [VS]T[{I|L}A] 5 -1 [VS] + + 3.3008 -0.42288 -0.22723 0.67462 0.67462 59.661 0 0 0 0 3.300756084811813 0 0 0 0 0 0 0 [VS]T[{I|L}A] 0.67462 - 8 + NaN NaN 161347.8 NaN 10327 3144 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13474 60.831 NaN 828310 35 0 122080 0.261 + 10681 IPVPYVEKL 9 80 529.3183979588227 1056.6222429844454 2 529.3182983398438 MULTI HCD FTMS 0 0 0 13472 266653.5625 0.6096082893274537 -2 0.05572509765625 2 Unmodified _IPVPYVEKL_ ENSG00000099942|ENST00000354336|CRKL 63.960520009940105 0.0120409805053046 2 {I|L}PVP[YV]EK{I|L} 9 0 + 72.731 0 0 6.8833 6.8833 93.267 0 0 0 38.600840614449794 10.374467812752926 10.374467812752926 23.92159058960253 0 2.079689690656103 1.5228787452803376 1.110924374808178 0.2742275032520141 + + {I|L}PVP[YV]EK{I|L};[YV]PV[{I|L}P]EK{I|L};[VP]YV[{I|L}P]EK{I|L};[{I|L}P]VD{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}K{I|L};[YV]PV[EP]{I|L}K{I|L};[VP]YV[EP]{I|L}K{I|L};{I|L}[{I|L}T]{I|L}KEPP{M(Oxidation (M))|F};[YV]PEK{I|L}[VP]{I|L};[VP]YEK{I|L}[VP]{I|L};[VP]YE[VP]{I|L}K{I|L} 6.8833;4.6193;4.6193;3.9782;3.8167;3.8167;3.4647;3.411;3.411;3.2469 +;-;-;-;-;-;-;-;-;- + 597 + NaN NaN 221209.5 NaN 10328 3144 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13475 60.835 NaN 537780 35 0 56431 0.261 + 34741 YPVVEIREL 9 70 559.3161944156576 1116.6178358981151 2 559.3162841796875 MULTI HCD FTMS 0 0 0 13472 181600.75 0.8053177469959902 1 -0.022815704345703125 3 Unmodified _YPVVEIREL_ ENST00000378037.9_1_13:53030708-53035053:+|nuORF 65.47368725323818 0.010552856507075443 2 YPR{I|L}EVVE{I|L} 9 4 + 90.952 0 0 8.1453 8.1453 89.741 0 0 0 5.083559388717376 5.083559388717376 5.083559388717376 5.083559388717376 0 2.110924374808178 1.6989700043360187 0 0 YPR{I|L}EVVE{I|L};[VP]YVE{I|L}RE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVE{I|L}RE{I|L};[VP]VYE{I|L}RE{I|L} 8.1453;7.6901;7.6696;6.9727 -;-;+;- + 421 + NaN NaN 169707.3 NaN 10329 3144 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13476 60.838 NaN 489320 35 0 106380 0.261 + 4596 EYLRQIFRL 9 67 619.356408920929 1236.6982649086578 2 619.3563232421875 MULTI HCD FTMS 0 0 0 13472 205655.265625 0.8001991327142268 -1 0.039501190185546875 4 Unmodified _EYLRQIFRL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 53.31671820480216 0.026930930319421505 2 {I|L}E[YR]Q{I|L}{M(Oxidation (M))|F}R{I|L} 9 2 + 60.328 0 0 4.8781 4.8781 84.993 0 0 0 9.018637558036673 6.977437731477423 6.977437731477423 6.977437731477423 0 1.6237125054200234 0 0.4247425010840047 0.6989700043360187 {I|L}E[YR]Q{I|L}{M(Oxidation (M))|F}R{I|L};{I|L}E[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}];E{I|L}[YR]Q{I|L}{M(Oxidation (M))|F}R{I|L};{I|L}E[YR][AG]{I|L}{M(Oxidation (M))|F}R{I|L};E{I|L}[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}];{I|L}E[YR][AG]{I|L}{I|L}[R{M(Oxidation (M))|F}];E{I|L}[YR][AG]{I|L}{M(Oxidation (M))|F}R{I|L};E{I|L}[YR][AG]{I|L}{I|L}[R{M(Oxidation (M))|F}] 4.8781;4.3139;4.1489;4.1335;3.5847;3.5693;3.4043;2.8401 -;-;-;-;-;-;-;- 207 + NaN NaN 166685.5 NaN 10330 3144 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13477 60.842 NaN 429720 35 0 32990 0.261 + -1 YMDCTTCLE 9 65 576.2056376582378 1150.3967223832756 2 576.2054443359375 MULTI HCD FTMS 0 0 0 13472 66714.6953125 0.4101077140858758 3 -0.08856582641601562 5 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))DC(Carbamidomethyl (C))TTCLE_ REV__ENST00000559471.5_1_15:49283317-49283419:-|nuORF 2.302733041254933 0.33356062215410776 2 {I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3 -1 5.9421 0 0 0.51653 0 0 785.2080759983131 0 785.2080759983131 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 0.51653 - 6 + NaN NaN 163027.3 NaN 10331 3144 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13478 60.845 NaN 507510 35 0 30586 0.261 -1 LPAAGVGDMVM 11 104 538.7591894008003 1075.5038258684006 2 538.7596435546875 MULTI HCD FTMS 0 0 0 13472 79272.7578125 0.23616565262204076 22 -0.5963897705078125 6 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF 22.736283301280096 0.2589804299186601 2 VV{M(Oxidation (M))|F} 3 -1 29.922 0 0 2.7821 0 0 712.32003177836 0 712.32003177836 0 12.843181179205061 0 0 0 1 0 0 0 VV{M(Oxidation (M))|F} 2.7821 - 269 + NaN NaN 160140.4 NaN 10332 3144 13472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13480 60.85 NaN 4551500 35 0 579570 0.327 + 13324 KYMDVQFDF 9 114 604.7681496085214 1207.5217462838427 2 604.7685546875 MULTI HCD FTMS 0 0 0 13479 3149590.75 0.7075182571853041 4 -0.11815643310546875 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 160.6895995991744 8.89223804155775E-09 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 92.537 0 0 7.6634 7.6634 87.455 0 0 0 1.3071968632008435 11.157424843733637 1.3071968632008435 1.3071968632008435 0 2.305462187404089 0 1.611407999752478 1.1307196863200843 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]DKVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.6634;7.5552;7.5085;7.3481;6.9008;6.7926;6.7459;6.5856;6.4729;6.4175 +;-;-;-;-;-;-;-;-;- + 9832 NaN NaN 621301.6 NaN 10333 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13481 60.854 NaN 555130 35 0 56811 0.261 + 16826 LYECTGQFDF 10 77 611.7579772133546 1221.501401493509 2 611.7584228515625 MULTI HCD FTMS 0 0 0 13479 194233.40625 0.6185497789013116 -1 0.022815704345703125 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 49.55428908609986 0.07941048486997417 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 69.425 0 0 5.6836 5.6836 87.279 0 0 0 5.695217787905662 50.90284340191072 5.695217787905662 9.164539485499255 0 2.3494850021680094 0 0.5752574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}]Q{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AV{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}][AG]{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}]Q{[{M(Oxidation (M))|F}D]|MM}[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.6836;4.9333;4.4295;4.2688;4.1301;3.9694;3.6757;3.5943;3.515;3.515 -;-;-;-;-;-;-;-;-;- 707 NaN NaN 168398.9 NaN 10334 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13482 60.858 NaN 389080 35 0 52044 0.261 + 18861 NAELWQVSW 9 84 566.7753210247591 1131.5360891163182 2 566.7747802734375 MULTI HCD FTMS 0 0 0 13479 93800.9453125 0.33179059886737367 90 -2.085979461669922 3 Unmodified _NAELWQVSW_ ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A 22.736283301280096 0.1639198954644489 2 SVSW 4 6 48.365 0 0 4.2742 0 0 654.3120594709 0 654.3120594709 0 20.917352150239722 0 0 0 1.5629529932484498 0 0.3807196863200844 0 SVSW 4.2742 - 488 NaN NaN 146942.5 NaN 10335 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13483 60.861 NaN 875790 35 0 100380 0.261 + -1 VLWTLCFYLFF 11 74 503.59306843662836 1507.757375910085 3 503.5929870605469 MULTI HCD FTMS 0 0 0 13479 207045.3125 0.023059506400675372 49 -0.9827308654785156 4 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 14.218169984304629 0.3331990305275193 2 K{M(Oxidation (M))|F}TE[RN]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 60.923 0 0 4.0406 0 0 420.22468764472814 0 420.22468764472814 0 46.318591023204405 0 0 0 1.7302046884880937 0 0.8494850021680094 0 K{M(Oxidation (M))|F}TE[RN]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0406 - 140 NaN NaN 222874.8 NaN 10336 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13484 60.864 NaN 312690 35 0 28299 0.261 + -1 SFGNCDNKCC 10 63 631.2241233151296 1260.4336936970592 2 631.2244262695312 MULTI HCD FTMS 0 0 0 13479 69504.578125 0.6144781434312738 2 -0.0657501220703125 5 3 Carbamidomethyl (C) _SFGNC(Carbamidomethyl (C))DNKC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000540844.5_1_21:30439913-30445917:-|nuORF 1.6526216038709556 0.46655611578153744 2 Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 27.167 0 0 2.1554 0 0 705.1998768537125 0 705.1998768537125 0 2.730012720637376 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.1554 - 149 NaN NaN 129216.3 NaN 10337 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13485 60.868 NaN 247060 35 0 21315 0.261 + 13698 KYPHYFPLL 9 75 589.3238196682227 1176.6330864032452 2 589.323974609375 MULTI HCD FTMS 0 0 0 13479 61845.015625 0.14180453214920255 14 -0.4252281188964844 6 Unmodified _KYPHYFPLL_ ENSG00000172009|ENST00000307741|THOP1 48.345845343767074 0.03388484103555672 2 Y{M(Oxidation (M))|F}P{I|L}{I|L} 5 4 38.443 0 0 3.2672 0 0 525.2704945294937 0 525.2704945294937 0 16.677353201839438 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F}P{I|L}{I|L} 3.2672 + + 78 NaN NaN 132894 NaN 10338 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13486 60.871 NaN 133240 35 0 21444 0.263 + 25114 SAEVTPPVL 9 38 456.75544805776633 911.4963431823327 2 456.7552490234375 MULTI HCD FTMS 0 0 0 13479 31962.810546875 0.4883658809939639 1 -0.036190032958984375 7 Unmodified _SAEVTPPVL_ ENSG00000156030|ENST00000423556|MIDEAS;nc|ENSG00000156030|Q6PJG2|MIDEAS 20.453626601364224 0.18364154288633264 2 VT[RH]{I|L} 5 6 30.19 0 0 3.3121 0 0 287.11030776191564 0 287.11030776191564 0 15.496812376923046 0 0 0 0.9247425010840047 0 0.3494850021680094 0 VT[RH]{I|L} 3.3121 - 17 NaN NaN 106557.3 NaN 10339 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13487 60.874 NaN 228420 35 0 9073.4 0.261 + 22749 QYGKDFLTL 9 63 542.7862504256609 1083.5579479181217 2 542.78662109375 MULTI HCD FTMS 0 0 0 13479 77893.4453125 0.8003928606578525 2 -0.0657501220703125 8 Unmodified _QYGKDFLTL_ ENSG00000130818|ENST00000253115|ZNF426 52.268347100219714 0.028397529699942435 2 [YQ]V 3 7 17.637 0 0 1.6277 0 0 0 690.3553560846311 690.3553560846311 7.394549897933878 0 0 0 0 0.4247425010840047 1.0457574905606752 0 0 [YQ]V 1.6277 - 92 + NaN NaN 120730.6 NaN 10340 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13488 60.878 NaN 208770 35 0 7891.5 0.261 + -1 MAAESEAEALK 11 62 583.2740892778603 1164.5336256225205 2 583.2730102539062 MULTI HCD FTMS 0 0 0 13479 44661.1015625 0.016643337276680926 -31 0.8683128356933594 9 Oxidation (M) _M(Oxidation (M))AAESEAEALK_ REV__ENSG00000100209|ENST00000216027|HSCB 4.5288652416199255 0.3990586020344083 2 SW 2 -1 19.464 0 0 1.6714 0 0 873.4123315324799 0 873.4123315324799 0 1.9897000433601875 0 0 0 0 0 0 0 SW 1.6714 - 51 + NaN NaN 122855.1 NaN 10341 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13489 60.881 NaN 386840 35 0 71667 0.264 + 23857 RSFPPSLFIR 10 64 407.23629992485667 1218.68707037477 3 407.2362060546875 MULTI HCD FTMS 0 0 0 13479 54337.41015625 0.8689634833459322 2 -0.0657501220703125 10 Unmodified _RSFPPSLFIR_ REV__ENST00000425712.1_1_7:156265258-156395789:-|nuORF;REV__ENST00000447933.5_1_7:156265258-156398034:-|nuORF 7.0370850670814 0.43805529467587806 2 [YV]P[PS]Q{I|L} 7 -1 29.766 0 0 2.4425 0 0 0 431.2411302171635 431.2411302171635 22.776516252591676 0 0 0 0 0.8807196863200843 2 0 0 [YV]P[PS]Q{I|L} 2.4425 - 52 NaN NaN 142651.5 NaN 10342 3145 13479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13491 60.886 NaN 4618200 35 0 840460 0.327 + 24353 RYIDRIHIFF 10 85 460.5908872349479 1378.7508323050438 3 460.591064453125 MULTI HCD FTMS 0 0 0 13490 1473952.625 0.1553513979229462 10 -0.2937660217285156 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 44.94466952835103 0.1024974934706924 2 DR{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 3 76.239 0 0 5.5296 0 0 432.24958998847814 0 432.24958998847814 0 63.05146898142405 0 0 0 2.6989700043360187 0 0 0.6989700043360187 + DR{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5296 + + 353 NaN NaN 754294.2 NaN 10343 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13492 60.89 NaN 693100 35 0 73786 0.261 + 3817 EPEQFVVVM 9 74 547.266466701482 1092.518380469764 2 547.26611328125 MULTI HCD FTMS 0 0 0 13490 346526.375 0.6942418995937667 2 -0.05577850341796875 2 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 61.357469665136826 0.01568246967499496 2 {M(Oxidation (M))|F}VVV{M(Oxidation (M))|F} 5 4 55.573 0 0 5.0867 0 0 483.19905781527024 0 483.19905781527024 0 38.750612633917 0 0 0 2 0 0 0 + {M(Oxidation (M))|F}VVV{M(Oxidation (M))|F} 5.0867 + + 316 + NaN NaN 197091.3 NaN 10344 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13493 60.894 NaN 819360 35 0 327770 0.261 + 30445 VLPNRPFGLF 10 74 580.3346872533688 1158.6548215735374 2 580.334716796875 MULTI HCD FTMS 0 0 0 13490 310854.125 0.13810836042093946 10 -0.2937660217285156 3 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 19.256988751693697 0.33098864134661865 2 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}VS 9 6 71.38 0 0 6.1606 0 0 0 201.06600366763908 201.06600366763908 53.93298474960609 0 0 0 0 1.5 1.6989700043360187 0 0.3807196863200844 V{I|L}PQ[{I|L}A]{M(Oxidation (M))|F}VS 6.1606 - 159 + NaN NaN 207295.3 NaN 10345 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13494 60.897 NaN 1172700 35 0 237440 0.261 + 17037 LYIVHPTMF 9 84 568.7942762627684 1135.5739995923368 2 569.30615234375 MULTI HCD FTMS 0 0 0 13490 44500.1015625 0.18036141609480047 13 -0.3890380859375 4 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 89.42679046578446 0.004540987215715461 2 {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 66.959 0 0 5.8964 5.8964 89.867 0 0 0 31.186325763506503 10.72559982972642 10.72559982972642 12.206225184280797 0 1.8667053245199625 1.5228787452803376 0.7302046884880937 0 + + {I|L}Y{I|L}VHPT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}VHPTMY;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K[WR][AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[HC][{I|L}V]{I|L}Y 5.8964;4.8216;1.9542;1.1386;0.13887 +;-;-;-;- + 535 + NaN NaN 266261.2 NaN 10346 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13495 60.901 NaN 427640 35 0 93006 0.261 + 34517 YPFSSSNDEEL 11 65 644.2725842373487 1286.5306155414974 2 644.2724609375 MULTI HCD FTMS 0 0 0 13490 193584.390625 0.707878156337907 -1 0.036190032958984375 5 Unmodified _YPFSSSNDEEL_ ENSG00000158092|ENST00000481752|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion 59.05245873256422 0.044245242383288266 2 SS[NS]DEE{I|L} 8 3 72.74 0 0 5.654 0 0 407.1840992658219 0 407.1840992658219 0 67.25563154776665 0 0 0 1.610924374808178 0 0.8494850021680094 0.6989700043360187 + SS[NS]DEE{I|L} 5.654 + + 134 NaN NaN 168022.8 NaN 10347 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13496 60.904 NaN 251430 35 0 18499 0.262 -1 ETTGWFQMP 9 60 556.7390392309527 1111.4635255287053 2 556.7393188476562 MULTI HCD FTMS 0 0 0 13490 67084.8984375 0.5482406928204576 4 -0.10813522338867188 6 Oxidation (M) _ETTGWFQM(Oxidation (M))P_ ENSG00000198722|ENST00000635942|UNC13B 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 22.351 0 0 2.011 0 0 867.2857533185562 0 867.2857533185562 0 6.893630146118264 0 0 0 0.28872548999643577 0 0 0 {I|L}{I|L} 2.011 - 33 NaN NaN 127201.1 NaN 10348 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13497 60.907 NaN 307070 35 0 29674 0.261 + 1230 AYLPEWKENI 10 67 631.8241452279161 1261.6337375226321 2 631.82421875 MULTI HCD FTMS 0 0 0 13490 84058.984375 0.987922237351817 3 -0.08196640014648438 7 Unmodified _AYLPEWKENI_ ENSG00000198420|ENST00000479870|TCAF1;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1 21.536976647645854 0.3096624038397699 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 7 36.695 0 0 2.9085 0 0 0 911.426162409604 911.426162409604 6.773174902439578 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.9085 + + 81 NaN NaN 135527.8 NaN 10349 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13498 60.911 NaN 102860 35 0 8182.5 0.264 + 21409 PVPPPTEA 8 64 404.2159510275107 806.4173491218214 2 404.21600341796875 MULTI HCD FTMS 0 0 0 13490 43745.11328125 0.38948832350507423 6 -0.16716384887695312 8 Unmodified _PVPPPTEA_ REV__ENSG00000122779|ENST00000343526|TRIM24;REV__nc|ENSG00000122779|O15164-2|TRIM24;REV__TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant 5.760428011301431 0.5334459684533844 2 DD{I|L}{I|L}GK{M(Oxidation (M))|F} 7 -1 + 54.78 0 0 6.7931 6.7931 94.597 0 0 0 6.777807052660805 7.368055416408993 6.777807052660805 54.78047684763908 0 1.8494850021680094 0 0 0 DD{I|L}{I|L}GK{M(Oxidation (M))|F} 6.7931 - 36 + NaN NaN 110529.5 NaN 10350 3146 13490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13500 60.916 NaN 614010 35 0 66215 0.327 + 14610 LFRWAEEL 8 85 532.2820805371144 1062.5496081410288 2 532.2677612304688 MULTI HCD FTMS 0 0 0 13499 75598.5 0.15941231358036406 14 -0.4151344299316406 1 Unmodified _LFRWAEEL_ ENSG00000164169|ENST00000322396|PRMT9 19.438996006549623 0.45076845602799126 2 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 7 43.588 0 0 4.1022 0 0 165.1080221846359 0 165.1080221846359 0 0.7862757185279179 0 0 0 0 0 1.1861818737241734 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.1022 - 494 + NaN NaN 189938.8 NaN 10351 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13501 60.92 NaN 646000 35 0 80912 0.261 + 31500 VYFVAPAKF 9 52 521.2920786950338 1040.5696044568674 2 521.2913208007812 MULTI HCD FTMS 0 0 0 13499 203410.578125 1 0 0 2 Unmodified _VYFVAPAKF_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 64.23631603340823 0.01165516075559909 2 VY{M(Oxidation (M))|F}VA[PA]K{M(Oxidation (M))|F} 9 0 + 86.648 0 0 8.327 8.327 88.28 0 0 0 13.526457331334854 13.526457331334854 13.526457331334854 0.7964446106974776 0 2.3494850021680094 1.6989700043360187 0 0 + + VY{M(Oxidation (M))|F}VA[PA]K{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}VA[KA]P{M(Oxidation (M))|F};[YV][KA]AV{M(Oxidation (M))|F}P{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}Q[{I|L}P]K{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}Q[K{I|L}]P{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}[AG][{I|L}P]K{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}[AG][K{I|L}]P{M(Oxidation (M))|F};[YV][K{I|L}]Q{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KS]AV{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YV][K{I|L}][AG]{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 8.327;8.2504;7.0271;6.7176;6.6411;5.8275;5.751;5.4177;5.0627;4.5276 +;-;-;-;-;-;-;-;-;- + 218 + NaN NaN 186265.5 NaN 10352 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13502 60.924 NaN 238970 35 0 27229 0.261 + 31873 VYNDHSIYVW 10 54 648.3062692986289 1294.5979856640577 2 648.3055419921875 MULTI HCD FTMS 0 0 0 13499 68430.1015625 0.4579444915450961 4 -0.10809326171875 3 Unmodified _VYNDHSIYVW_ ENSG00000137802|ENST00000457542|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 10.799506525563784 0.4100970765206026 2 C(Carbamidomethyl (C))YVW 4 7 41.542 0 0 3.2089 0 0 668.34086806465 0 668.34086806465 0 38.44335023848103 0 0 0 1.5 0 0 0 C(Carbamidomethyl (C))YVW 3.2089 - 41 NaN NaN 122546.5 NaN 10353 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13503 60.927 NaN 338180 35 0 37537 0.263 + 19413 NPIGFVEKL 9 70 508.7923545057406 1015.5701560782812 2 508.7922058105469 MULTI HCD FTMS 0 0 0 13499 103806.859375 0.4667666105471801 -2 0.0657501220703125 4 Unmodified _NPIGFVEKL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 121.34585337138759 0.001129813327125052 2 NP{I|L}G{M(Oxidation (M))|F}VEK{I|L} 9 0 + 91.073 0 0 8.9677 8.9677 98.609 0 0 0 70.1038971730565 11.439389643433628 11.439389643433628 91.07299730313706 0 2.6237125054200234 1.0969100130080565 0.6237125054200234 0.3807196863200844 + + NP{I|L}G{M(Oxidation (M))|F}VEK{I|L} 8.9677 + + 238 + NaN NaN 139763.8 NaN 10354 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13504 60.93 NaN 295390 35 0 16777 0.261 + 33959 YLSTLRWFQ 9 67 607.3237313967675 NaN 0 607.3505249023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLSTLRWFQ_ CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant;ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR 4.3292370932331545 0.2742679634796037 2 N{M(Oxidation (M))|F}EV 4 9 12.941 0 0 1.0672 0 0 167.1843566267267 553.2121065729124 720.3964631996391 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}EV 1.0672 - 83 + NaN NaN 127900.2 NaN 10355 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13505 60.934 NaN 107090 35 0 8701.6 0.263 + 32979 YAQDLYVI 8 41 492.75399314474805 983.4934333562961 2 492.7549133300781 MULTI HCD FTMS 0 0 0 13499 26525.298828125 0.10316030770788291 13 -0.3856697082519531 6 Unmodified _YAQDLYVI_ ENSG00000148384|ENST00000371712|INPP5E;nc|ENSG00000148384|Q9NRR6-2|INPP5E 12.531546534597751 0.5015908124873912 2 V{I|L} 2 6 25.969 0 0 2.6405 0 0 753.3295155255875 0 753.3295155255875 0 8.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.6405 + + 16 NaN NaN 112430.4 NaN 10356 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13506 60.937 NaN 237120 35 0 9315.5 0.261 -1 DMLDPGLVMTG 11 69 582.7692263923088 NaN 0 582.7685546875 PEAK HCD FTMS 0 0 0 13499 34168.92578125 0.3700283721365061 11 -0.3199501037597656 7 Oxidation (M) _DMLDPGLVM(Oxidation (M))TG_ ENSG00000135074|ENST00000257527|ADAM19;ENST00000517951.5_1_5:156822576-156936463:-|nuORF;nc|ENSG00000135074|Q9H013|ADAM19 8.745405648335112 0.31731194618894887 2 S 1 -1 13.737 0 0 1.1806 0 0 872.4016597164551 201.06655298404533 1073.4682127005005 0 0 0 0 0 0.6747425010840047 0 0 0 S 1.1806 - 41 + NaN NaN 141265.2 NaN 10357 3147 13499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13508 60.942 NaN 5893200 35 0 684410 0.327 + 27099 SYMGHFDLL 9 121 549.7498597197784 1097.4851665063568 2 549.7503051757812 MULTI HCD FTMS 0 0 0 13507 2953506.25 0.35078654526520525 5 -0.14760971069335938 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 180.00974506902125 1.0762292318080308E-12 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 97.863 0 0 8.917 8.917 96.613 0 0 0 44.23877368056628 9.889917747712644 9.889917747712644 25.542359562158126 0 2.6549471895720984 2 1.7491348669726232 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};[Y{M(Oxidation (M))|F}]SGH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}G[{I|L}P][QT]W;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];[Y{M(Oxidation (M))|F}]{[HG]|PP}S{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L} 8.917;6.5897;5.746;4.2604;3.9556;3.9031;3.7365;3.5505;3.5001;3.4567 +;+;-;-;-;-;-;-;-;- + 4188 + NaN NaN 633472.9 NaN 10358 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13509 60.946 NaN 2189600 35 0 448030 0.263 + 4594 EYLRQIFRL 9 73 413.2398812716732 1236.6978144152197 3 413.23992919921875 MULTI HCD FTMS 0 0 0 13507 584266.3125 0.618468141907086 3 -0.08187484741210938 2 Unmodified _EYLRQIFRL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 34.93206674587334 0.08860942999206235 2 [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F}[R{I|L}] 9 0 + 40.446 0 0 3.2705 3.2705 82.745 0 0 0 14.59954981438067 3.714665468102808 3.714665468102808 6.020599913279625 0 0.28872548999643577 0 0 1.1237125054200234 + + [YE]{I|L}RQ{I|L}{M(Oxidation (M))|F}[R{I|L}];[YE]{I|L}RQ{I|L}{I|L}[R{M(Oxidation (M))|F}];[YE]{I|L}R[AG]{I|L}{M(Oxidation (M))|F}[R{I|L}];[YE]{I|L}R[AG]{I|L}{I|L}[R{M(Oxidation (M))|F}] 3.2705;2.7836;2.5259;2.039 +;-;-;- + 228 + NaN NaN 426126.9 NaN 10359 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13510 60.95 NaN 535260 35 0 57900 0.261 + 12929 KYGPVFSF 8 75 472.7475320309645 943.4805111287291 2 472.7474060058594 MULTI HCD FTMS 0 0 0 13507 205989.375 0.395355793283751 2 -0.052356719970703125 3 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 71.13359017698441 0.02838631364316653 2 [YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 0 [YK] + + 62.708 5.2288 1.7959 6.6465 6.6465 65.01 0 0 0 0 39.800821617046935 0 0 0 2.3494850021680094 0 1.2302046884880937 0 + + [YK]G[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.6465 + + 416 + NaN NaN 169149.6 NaN 10360 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13511 60.953 NaN 573770 35 0 60093 0.261 -1 MQYYKLHKMIW 11 99 533.5998041907897 1597.777583172569 3 533.9344482421875 MULTI HCD FTMS 0 0 0 13507 79657.25 0.09717237652363153 11 -0.33325958251953125 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MQYYKLHKM(Oxidation (M))IW_ ENST00000575475.2_1_17:5235261-5235390:+|nuORF 0.09484139111097674 0.41850472438158626 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}P 8 -1 42.765 0 0 2.6765 0 0 0 618.3237398736936 618.3237398736936 22.280156171532184 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0.4247425010840047 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QS]|[NT]}P 2.6765 - 447 + NaN NaN 176121 NaN 10361 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13512 60.956 NaN 453890 35 0 79429 0.262 + 4555 EYLKNIIYRF 10 52 453.5869932615706 1357.739150384912 3 453.92156982421875 MULTI HCD FTMS 0 0 0 13507 51074.60546875 0.536176398608109 1 -0.026187896728515625 5 Unmodified _EYLKNIIYRF_ ENSG00000179562|ENST00000321407|GCC1 10.315234532428624 0.4146267933501748 2 KN{I|L}{I|L}P{I|L}[C(Carbamidomethyl (C))N] 8 7 31.146 0 0 2.294 0 0 387.17854506660314 0 387.17854506660314 0 15.472287753157516 0 0 0 0 0 0 0 KN{I|L}{I|L}P{I|L}[C(Carbamidomethyl (C))N] 2.294 - 105 NaN NaN 161614.4 NaN 10362 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13513 60.96 NaN 461720 35 0 133040 0.261 + 31328 VWTAKQHFSF 10 59 417.54867420919254 1249.6241932277776 3 417.8831481933594 MULTI HCD FTMS 0 0 0 13507 63355.14453125 0.11412429131259974 12 -0.3594512939453125 6 Unmodified _VWTAKQHFSF_ ENSG00000196433|ENST00000381241|ASMT;nc|ENSG00000292336|P46597|ASMT 4.189502756095605 0.45312800054222196 2 {[RE]|[WV]}D 3 8 19.666 0 0 1.5737 0 0 0 846.4274213374057 846.4274213374057 2.676062401770313 0 0 0 0 0 1.3979400086720375 0 0 {[RE]|[WV]}D 1.5737 - 20 NaN NaN 159837.9 NaN 10363 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13514 60.963 NaN 294350 35 0 17303 0.261 + 18161 MPDGQFKDISL 11 79 625.8079181236785 1249.601283314157 2 626.3096923828125 MULTI HCD FTMS 0 0 0 13507 20205.8515625 0.06512959897466705 -18 0.5071983337402344 7 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 31.461819360018414 0.19193863146671417 2 {I|L}DD{[QG]|[NA]}{M(Oxidation (M))|F} 6 7 39.117 0 0 3.1304 0 0 0 571.3059786432249 571.3059786432249 19.008965059150675 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0.4247425010840047 {I|L}DD{[QG]|[NA]}{M(Oxidation (M))|F} 3.1304 - 296 + NaN NaN 140267.7 NaN 10364 3148 13507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13516 60.968 NaN 822940 35 0 128000 0.327 + 10682 IPVPYVEKL 9 88 529.3183979588227 1056.6222429844454 2 529.3184204101562 MULTI HCD FTMS 0 0 0 13515 278061.4375 0.6356883277803862 3 -0.08519744873046875 1 Unmodified _IPVPYVEKL_ ENSG00000099942|ENST00000354336|CRKL 67.83816525789305 0.009787749748478139 2 {I|L}PVPYVEK{I|L} 9 0 + 80.735 0 0 7.6408 7.6408 93.98 0 0 0 38.462170460924355 7.632192780232785 7.632192780232785 16.977437731477416 0 2.3979400086720375 1.3979400086720375 1.0994850021680094 0 + + {I|L}PVPYVEK{I|L};{I|L}PVPYV[SG]{I|L}{I|L};[{I|L}P]VPYVEK{I|L};[VP]YV[{I|L}P]EK{I|L};[YV]PV[{I|L}P]EK{I|L};[VP]{I|L}PYVEK{I|L};[VP]Y[{I|L}P]VEK{I|L};[{I|L}P]VPYD{I|L}K{I|L};[YV]P[{I|L}P]VEK{I|L};[VP]YEK{I|L}[VP]{I|L} 7.6408;6.0341;5.4197;4.9567;4.8385;4.7798;4.3616;4.3229;4.2433;4.1365 +;-;+;-;-;-;-;-;-;- + 624 + NaN NaN 215739 NaN 10365 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13517 60.972 NaN 541780 35 0 82315 0.261 + 5747 FPAGYMYPSM 10 64 598.2437384201628 1194.4729239071255 2 598.2440795898438 MULTI HCD FTMS 0 0 0 13515 283900.25 0.9732416627796884 10 -0.3070716857910156 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.13359017698441 0.016242133362018647 2 [WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 5 + 54.415 0 0 4.5556 4.5556 82.321 0 0 0 33.44598414889781 0.21915905133738534 0.21915905133738534 1.5051499783199063 0 1.6237125054200234 0 1.5044321917401078 0 [WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.5556;4.4296 -;- 122 + NaN NaN 171926.1 NaN 10366 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13518 60.976 NaN 805650 35 0 42048 0.261 + 21936 QEDLRTFSW 9 96 591.2830667274986 1180.5515805217972 2 591.2828369140625 MULTI HCD FTMS 0 0 0 13515 277878.375 0.8721446730379926 -3 0.08196640014648438 3 Unmodified _QEDLRTFSW_ ENSG00000145907|ENST00000356245|G3BP1 103.41943736471063 0.004016698775839292 2 S{M(Oxidation (M))|F}WT{M(Oxidation (M))|F}SW 7 5 62.828 0 0 5.322 0 0 221.11647332165518 0 221.11647332165518 0 24.41581315352881 0 0 0 1.079689690656103 0 1.5356668758921828 0 S{M(Oxidation (M))|F}WT{M(Oxidation (M))|F}SW 5.322 - 1879 + NaN NaN 232417.4 NaN 10367 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13519 60.979 NaN 460470 35 0 87641 0.261 + 12733 KYAMMFAEL 9 85 560.2641780464887 1118.5138031597774 2 560.2646484375 MULTI HCD FTMS 0 0 0 13515 202406.828125 0.5298279957630242 13 -0.3854789733886719 4 Oxidation (M) _KYAMM(Oxidation (M))FAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 45.69961567697781 0.039180348357221985 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 5 4 47.484 0 0 4.2453 0 0 493.23384291816564 0 493.23384291816564 0 35.17668049256423 0 0 0 1.4731975075880328 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}AE{I|L} 4.2453 + + 549 NaN NaN 160112.3 NaN 10368 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13520 60.983 NaN 219710 35 0 117500 0.261 -1 0 43 516.3013490867068 515.2940726201067 1 516.3016357421875 MULTI HCD FTMS 0 0 0 13515 86937.890625 0.3557580076362308 6 -0.17899322509765625 5 NaN NaN 2 P{M(Oxidation (M))|F} 2 -1 16.454 0 0 3.1931 0 0 253.16289083475357 0 253.16289083475357 0 16.453650195120844 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 3.1931 - 6 + NaN NaN 118403.9 NaN 10369 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13521 60.986 NaN 103500 35 0 18269 0.261 + 23398 RLFHCNDERL 10 43 434.88227666134424 NaN 0 434.88238525390625 PEAK HCD FTMS 0 0 0 13515 30226.412109375 0.5342731953086188 38 -0.7659416198730469 6 Unmodified _RLFHCNDERL_ REV__ENSG00000079337|ENST00000449771|RAPGEF3;REV__ENSG00000091428|ENST00000397081|RAPGEF4;REV__ENST00000479866.5_1_12:48143124-48152369:-|nuORF;REV__ENST00000482843.5_1_12:48142600-48152369:-|nuORF;REV__nc|ENSG00000079337|O95398-2|RAPGEF3;REV__nc|ENSG00000079337|O95398-3|RAPGEF3;REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 1.7422754331352037 0.33869314273211465 2 K 1 -1 6.9897 0 0 0.8055 0 0 188.38624414124473 548.2360933893186 736.6223375305633 0 0 0 0 0 0 0 0 0 K 0.8055 - 1 + NaN NaN 98640.3 NaN 10370 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13522 60.989 NaN 307430 35 0 14826 0.261 -1 PMDSQTKF 8 82 485.2224194647415 NaN 0 485.2386169433594 PEAK HCD FTMS 0 0 0 13515 20378.974609375 1 0 0 7 Oxidation (M) _PM(Oxidation (M))DSQTKF_ ENST00000429864.1_1_X:127575186-127575687:+|nuORF 10.183394434864962 0.38822285293237185 2 Q 1 -1 10.485 0 0 1.0826 0 0 237.06658688478825 600.2818173503399 837.3484042351281 0 0 0 0 0 0 0 0 0.3494850021680094 Q 1.0826 + + 47 + NaN NaN 146727.6 NaN 10371 3149 13515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13524 60.994 NaN 3123900 35 0 391920 0.327 + 13325 KYMDVQFDF 9 103 604.7681496085214 1207.5217462838427 2 604.7685546875 MULTI HCD FTMS 0 0 0 13523 2211857.25 0.4968675332383039 9 -0.2809028625488281 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 148.26817274609934 1.0657023776783114E-05 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 93.201 0 0 7.7184 7.7184 88.091 0 0 0 2.596273996463694 3.481362441963327 2.596273996463694 2.596273996463694 0 2.305462187404089 0 1.6298545532927076 1.0994850021680094 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VDYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.7184;7.5034;7.4727;7.3682;7.2821;7.1104;6.9558;6.79;6.7408;6.7102 +;-;-;-;-;-;-;-;-;- + 7488 NaN NaN 565545.1 NaN 10372 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13525 60.999 NaN 435200 35 0 47343 0.261 + 16827 LYECTGQFDF 10 70 611.7579772133546 1221.501401493509 2 611.7578125 MULTI HCD FTMS 0 0 0 13523 238102.796875 0.7582549016993062 4 -0.11482620239257812 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 41.95555342248728 0.12843670176738353 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 64.244 0 0 5.2595 5.2595 86.336 0 0 0 1.6371670413760242 45.30426438399566 1.6371670413760242 8.922363561572979 0 2.3494850021680094 0 0.3494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}QE{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}E{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[AG]E{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[AG]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 5.2595;4.529;4.5092;4.2945;4.0919;4.0481;3.7788;3.5407;3.3381;3.2942 -;-;-;-;-;-;-;-;-;- 731 NaN NaN 173002.5 NaN 10373 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13526 61.002 NaN 239180 35 0 127580 0.263 -1 0 53 490.2858495496192 489.2785730830192 1 490.28570556640625 MULTI HCD FTMS 0 0 0 13523 123234.03125 0.16172832387389854 13 -0.3786811828613281 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 128050 NaN 10374 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13527 61.005 NaN 405460 35 0 65650 0.261 + 4597 EYLRQIFRL 9 65 619.356408920929 1236.6982649086578 2 619.3558349609375 MULTI HCD FTMS 0 0 0 13523 146731.875 0.5709297972979258 5 -0.15282440185546875 4 Unmodified _EYLRQIFRL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 30.7034409873982 0.10802119112323902 2 {I|L}E[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}] 9 4 + 37.386 0 0 3.0231 3.0231 83.794 0 0 0 11.444021793654862 4.762036441594198 4.762036441594198 9.018637558036676 0 0.3807196863200844 0 0.4247425010840047 0 {I|L}E[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}];E{I|L}[YR]Q{I|L}{I|L}[R{M(Oxidation (M))|F}];{I|L}E[YR][AG]{I|L}{I|L}[R{M(Oxidation (M))|F}];E{I|L}[YR][AG]{I|L}{I|L}[R{M(Oxidation (M))|F}] 3.0231;2.2938;2.2785;1.5492 -;-;-;- 137 + NaN NaN 161714.4 NaN 10375 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13528 61.009 NaN 274540 35 0 29257 0.262 + 15513 LPDMVVSHL 9 58 505.7705025796239 1009.5264522260478 2 505.7702331542969 MULTI HCD FTMS 0 0 0 13523 46165.421875 0.05735576454564973 17 -0.43666839599609375 5 Unmodified _LPDMVVSHL_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 30.636539890814138 0.10832830463492794 2 {I|L}PDMVVSH{I|L} 9 0 + 46.029 0 0 4.5594 4.5594 90.754 0 0 0 35.57110048012923 6.751736484954378 6.751736484954378 46.02867538573598 0 0.6989700043360187 0 0.4247425010840047 0 + + {I|L}PDMVVSH{I|L} 4.5594 + + 58 + NaN NaN 132630 NaN 10376 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13529 61.012 NaN 391540 35 0 19117 0.261 -1 YMEDSPSFC 9 60 576.2056376582378 1150.3967223832756 2 576.20556640625 MULTI HCD FTMS 0 0 0 13523 68838.5625 0.42316352305281607 9 -0.2809028625488281 6 Carbamidomethyl (C),Oxidation (M) _YM(Oxidation (M))EDSPSFC(Carbamidomethyl (C))_ ENSG00000158955|ENST00000290015|WNT9B 4.75600775471527 0.31496297302216103 2 {I|L} 1 -1 5.4846 0 0 0.47675 0 0 163.91669416237556 870.3827494515375 1034.2994436139131 0 0 0 0 0 0 0 0 0 {I|L} 0.47675 - 7 + NaN NaN 148547.3 NaN 10377 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13530 61.015 NaN 315180 35 0 54529 0.261 + 31366 VYADKLLNI 9 54 524.8054989113787 1047.5964448895572 2 524.8055419921875 MULTI HCD FTMS 0 0 0 13523 85896.8203125 0.5477990172016614 -2 0.052356719970703125 7 Unmodified _VYADKLLNI_ ENSG00000137770|ENST00000260327|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF;nc|ENSG00000137770|Q05D32-2|CTDSPL2 45.739877483867886 0.03899552410870734 2 [YV]AD[K{I|L}]{I|L}N{I|L} 9 0 + 66.137 0 0 6.3132 6.3132 89.06 0 0 0 17.720384319171387 43.64516253185087 17.720384319171387 9.208187539523749 0 1.805462187404089 1.6989700043360187 0 0 + + [YV]AD[K{I|L}]{I|L}N{I|L};[YV]AD[K{I|L}]{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YG][K{I|L}]{I|L}N{I|L} 6.3132;5.4342;1.6596 +;-;- + 70 NaN NaN 127919.8 NaN 10378 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13531 61.019 NaN 175640 35 0 26270 0.261 + 7487 FVYRNESIIPL 11 44 450.91863098269164 1349.734063548275 3 450.9186706542969 MULTI HCD FTMS 0 0 0 13523 28782.046875 0.5086999575611826 3 -0.09525299072265625 8 Unmodified _FVYRNESIIPL_ ENSG00000134115|ENST00000446702|CNTN6 2.6312355333042263 0.4073809613003177 2 {I|L} 1 10 19.604 0 0 1.4524 0 0 1218.6399148439764 0 1218.6399148439764 0 4.119543704721593 0 0 0 0.5 0 0 0 + {I|L} 1.4524 + + 6 + NaN NaN 112697.9 NaN 10379 3150 13523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13533 61.024 NaN 2992800 35 0 555470 0.327 + 24354 RYIDRIHIFF 10 74 460.5908872349479 1378.7508323050438 3 460.5909729003906 MULTI HCD FTMS 0 0 0 13532 1172372.5 0.12356550927911894 15 -0.3997306823730469 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 39.922945255915025 0.1460754433722493 2 R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 64.201 0 0 4.6565 0 0 547.2749987365105 0 547.2749987365105 0 54.73705952196511 0 0 0 2.305462187404089 0 0 0 + R{I|L}H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.6565 + + 200 NaN NaN 530952.4 NaN 10380 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13534 61.028 NaN 401040 35 0 40037 0.261 -1 LDSKSVVETLC 11 80 625.8199451367826 1249.6253373403651 2 625.807861328125 MULTI HCD FTMS 0 0 0 13532 20960.3515625 0.08775943155681865 13 -0.36515045166015625 2 Carbamidomethyl (C) _LDSKSVVETLC(Carbamidomethyl (C))_ ENSG00000068383|ENST00000368594|INPP5A;ENST00000498337.1_1_10:134523853-134567324:+|nuORF 8.155526934196011 0.3831532958467648 2 {NN|[MP]|[D{I|L}]|[EV]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L} 9 -1 42.915 0 0 3.4342 0 0 0 215.12824814062915 215.12824814062915 20.95229386281659 0 0 0 0 0.3807196863200844 1.6989700043360187 0.5796896906561032 0 {NN|[MP]|[D{I|L}]|[EV]}D{[QG]|[NA]}{M(Oxidation (M))|F}KD{I|L} 3.4342 - 354 NaN NaN 151487 NaN 10381 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13535 61.032 NaN 585730 35 0 67662 0.261 + 17372 LYQHEINLF 9 78 588.8060870032504 1175.5976210733006 2 588.8063354492188 MULTI HCD FTMS 0 0 0 13532 220495 0.5929402376470294 -2 0.05568695068359375 3 Unmodified _LYQHEINLF_ ENSG00000115816|ENST00000234170|CEBPZ 85.64151623876279 0.004640175941193596 2 [Y{I|L}]QHE{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 79.936 0 0 6.7996 6.7996 87.896 0 0 0 6.440162615404077 16.478174818886373 6.440162615404077 6.440162615404077 0 1.6747425010840047 1.5228787452803376 0.3054621874040891 0.7614393726401688 + + [Y{I|L}]QHE{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]QHE{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]HE{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]QH{I|L}EN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[WQ]EN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]{I|L}EN{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]H{I|L}EN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QH{I|L}EGG{I|L}{M(Oxidation (M))|F} 6.7996;6.2517;6.0163;6.0163;5.8816;5.8448;5.4685;5.3338;5.0983;5.0983 +;-;-;-;-;-;-;-;-;- + 1104 NaN NaN 176332.5 NaN 10382 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13536 61.035 NaN 346420 35 0 33419 0.261 + 1849 CVDMRLLNL 9 83 538.7816984366117 NaN 0 538.78271484375 PEAK HCD FTMS 0 0 0 13532 38971.3671875 0.5783625092290625 2 -0.06573486328125 4 Unmodified _CVDMRLLNL_ REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF 19.256988751693697 0.19238547928067054 2 D 1 -1 11.99 0 0 1.1148 0 0 202.0779294679515 755.4198281778924 957.4977576458439 0 0 0 0 0 0.6505149978319906 0 0 0 D 1.1148 + + 43 + NaN NaN 162937.1 NaN 10383 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13537 61.038 NaN 154550 35 0 11535 0.261 + -1 CNYCCQERE 9 47 631.2241233151296 1260.4336936970592 2 631.2243041992188 MULTI HCD FTMS 0 0 0 13532 49895.59765625 0.441118485145921 8 -0.2513847351074219 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))NYCC(Carbamidomethyl (C))QERE_ REV__ENSG00000169714|ENST00000422453|CNBP;REV__ENST00000502372.1_1_3:128889298-128890145:-|nuORF;REV__nc|ENSG00000169714|P62633-2|CNBP;REV__nc|ENSG00000169714|P62633-3|CNBP;REV__nc|ENSG00000169714|P62633-4|CNBP;REV__nc|ENSG00000169714|P62633-5|CNBP;REV__nc|ENSG00000169714|P62633-6|CNBP;REV__nc|ENSG00000169714|P62633-7|CNBP;REV__nc|ENSG00000169714|P62633-8|CNBP 0.5247636613948944 0.34703895399870666 2 Q{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 4 -1 15.758 0 0 1.2502 0 0 705.1996937482437 0 705.1996937482437 0 6.8052345079578895 0 0 0 0.3054621874040891 0 0 0 Q{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 1.2502 - 30 NaN NaN 115000.5 NaN 10384 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13538 61.042 NaN 189950 35 0 10421 0.261 + 33320 YFTTKSYIF 9 54 585.2984687149487 1168.5823844966974 2 585.297607421875 MULTI HCD FTMS 0 0 0 13532 26002.9765625 0.736336525677018 1 -0.029510498046875 6 Unmodified _YFTTKSYIF_ ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21 19.256988751693697 0.19398022840297344 2 {I|L}{M(Oxidation (M))|F} 2 7 19.38 0 0 1.6585 0 0 890.4213105438429 0 890.4213105438429 0 12.390690719683093 0 0 0 0.3807196863200844 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.6585 + + 55 NaN NaN 130082.4 NaN 10385 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13539 61.045 NaN 221180 35 0 24833 0.264 + 31529 VYGFWKKRH 9 57 407.56224767818713 1219.6649136347614 3 407.5708923339844 MULTI HCD FTMS 0 0 0 13532 9957.0576171875 0.3392292954396538 2 -0.06573486328125 7 Unmodified _VYGFWKKRH_ ENSG00000112195|ENST00000483722|TREML2 7.910154910731844 0.2910521888787154 2 VY 2 7 44.464 0 0 3.6456 0 0 0 954.5088489948631 954.5088489948631 26.505149978319906 0 0 0 0 0.3494850021680094 2 0 0 + VY 3.6456 + + 37 + NaN NaN 122907.3 NaN 10386 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13540 61.048 NaN 114510 35 0 5867.6 0.261 + 32980 YAQDLYVI 8 48 492.75399314474805 983.4934333562961 2 492.75360107421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YAQDLYVI_ ENSG00000148384|ENST00000371712|INPP5E;nc|ENSG00000148384|Q9NRR6-2|INPP5E 12.531546534597751 0.5015908124873912 2 V{I|L} 2 6 22.078 0 0 2.2449 0 0 753.329881736525 0 753.329881736525 0 4.119543704721593 0 0 0 0.3494850021680094 0 0 0 + V{I|L} 2.2449 + + 30 NaN NaN 106280.1 NaN 10387 3151 13532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13542 61.053 NaN 1114600 35 0 263720 0.327 + 17038 LYIVHPTMF 9 82 568.7942762627684 1135.5739995923368 2 569.30615234375 MULTI HCD FTMS 0 0 0 13541 41259.375 0.16722656894916854 19 -0.4079399108886719 1 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 53.57557251787612 0.02656881086235134 2 [Y{I|L}]{I|L}VH[EC]{I|L}{M(Oxidation (M))|F} 9 3 [Y{I|L}]{I|L} + + 39.143 22.932 5.8916 3.447 3.447 60.428 0 0 0 0 14.969617958179242 0 0 0 1.524227503252014 0 0 0 [Y{I|L}]{I|L}VH[EC]{I|L}{M(Oxidation (M))|F} 3.447 - 364 + NaN NaN 256361.3 NaN 10388 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13543 61.058 NaN 529260 35 0 187010 0.261 + 30446 VLPNRPFGLF 10 62 580.3346872533688 1158.6548215735374 2 580.3348388671875 MULTI HCD FTMS 0 0 0 13541 177506.515625 0.07886378807745473 16 -0.38672637939453125 2 Unmodified _VLPNRPFGLF_ ENSG00000005187|ENST00000289416|ACSM3 13.90604991867851 0.3810395177745597 2 V{I|L}PRR{M(Oxidation (M))|F}V 7 5 54.798 0 0 4.7295 0 0 0 288.0987948053344 288.0987948053344 47.80857585810999 0 0 0 0 1.5 1.5228787452803376 0 0 V{I|L}PRR{M(Oxidation (M))|F}V 4.7295 - 63 + NaN NaN 175366 NaN 10389 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13544 61.061 NaN 443590 35 0 64883 0.261 + 34518 YPFSSSNDEEL 11 75 644.2725842373487 1286.5306155414974 2 644.2726440429688 MULTI HCD FTMS 0 0 0 13541 170230.359375 0.6224796976557073 5 -0.1594696044921875 3 Unmodified _YPFSSSNDEEL_ ENSG00000158092|ENST00000481752|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion 29.43715596616401 0.20497810090165547 2 DEE{I|L} 4 7 43.686 0 0 3.3956 0 0 782.3234730451187 0 782.3234730451187 0 22.443415770716157 0 0 0 0.4247425010840047 0 0.75 0 + DEE{I|L} 3.3956 + + 136 NaN NaN 157084.7 NaN 10390 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13545 61.065 NaN 338230 35 0 25303 0.262 + 3818 EPEQFVVVM 9 65 547.266466701482 1092.518380469764 2 547.2657470703125 MULTI HCD FTMS 0 0 0 13541 72583.671875 0.14541642390709988 8 -0.24806594848632812 4 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 52.268347100219714 0.028397529699942435 2 VVV{M(Oxidation (M))|F} 4 5 48.047 0 0 4.3979 0 0 630.2676613308953 0 630.2676613308953 0 27.385606273598313 0 0 0 1.8494850021680094 0 0 0 + VVV{M(Oxidation (M))|F} 4.3979 + + 213 + NaN NaN 132338.3 NaN 10391 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13546 61.068 NaN 218140 35 0 19016 0.261 + 16434 LSMGSASYYDF 11 45 620.7629310876104 1239.5113092420206 2 620.762939453125 MULTI HCD FTMS 0 0 0 13541 82391.578125 0.35093942261981736 11 -0.3196525573730469 5 Unmodified _LSMGSASYYDF_ REV__ENSG00000157103|ENST00000287766|SLC6A1 5.296884461304476 0.39569033063702824 2 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 48.972 0 0 3.9509 0 0 280.10505873847814 0 280.10505873847814 0 48.97176992505884 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.9509 - 71 NaN NaN 117971 NaN 10392 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13547 61.071 NaN 302220 35 0 43689 0.262 + 28605 TQIHGLFTF 9 71 532.2820805371144 1062.5496081410288 2 532.268310546875 MULTI HCD FTMS 0 0 0 13541 39379.81640625 0.08303905026806471 19 -0.4079399108886719 6 Unmodified _TQIHGLFTF_ REV__ENSG00000112159|ENST00000369393|MDN1;REV__MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant 12.531546534597751 0.2520865569484384 2 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 -1 36.062 0 0 3.3939 0 0 165.1085420723403 0 165.1085420723403 0 26.14085105773654 0 0 0 0 0 1.0356668758921828 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.3939 - 134 + NaN NaN 137966.3 NaN 10393 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13548 61.074 NaN 232660 35 0 15859 0.261 + 27377 SYSPLLREF 9 64 556.291825071335 1110.5690972094699 2 556.29248046875 MULTI HCD FTMS 0 0 0 13541 81203.0546875 1 0 0 7 Unmodified _SYSPLLREF_ ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5 38.175570920033316 0.07371992880350783 2 {[{M(Oxidation (M))|F}C]|[YS]}S{I|L}P{I|L}{I|L}DG{M(Oxidation (M))|F} 10 3 {[{M(Oxidation (M))|F}C]|[YS]} + + 58.085 5.2288 2.0907 5.2302 5.2302 62.654 0 0 0 0 51.51776940615747 0 0 0 0.4247425010840047 0 0.7742275032520141 0 {[{M(Oxidation (M))|F}C]|[YS]}S{I|L}P{I|L}{I|L}DG{M(Oxidation (M))|F} 5.2302 - 242 + NaN NaN 127635.6 NaN 10394 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13549 61.078 NaN 261720 35 0 24015 0.261 -1 DKLCTTLEDA 10 68 583.2740892778603 1164.5336256225205 2 583.270751953125 MULTI HCD FTMS 0 0 0 13541 44847.7421875 0.016712890484343268 -24 0.6810722351074219 8 Carbamidomethyl (C) _DKLC(Carbamidomethyl (C))TTLEDA_ ENSG00000151962|ENST00000281722|RBM46;nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46 5.731851221503515 0.44496410492002586 2 YED{I|L} 4 -1 21.146 0 0 1.8159 0 0 626.2903433412575 0 626.2903433412575 0 6.354094346812563 0 0 0 0 0 0 0 YED{I|L} 1.8159 - 217 NaN NaN 129071.6 NaN 10395 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13550 61.081 NaN 154580 35 0 17491 0.264 + 5658 FNQPKGLLRF 10 45 407.23629992485667 1218.68707037477 3 407.23553466796875 MULTI HCD FTMS 0 0 0 13541 19324.693359375 0.30904036110419963 9 -0.2775306701660156 9 Unmodified _FNQPKGLLRF_ REV__ENST00000578387.1_1_4:184019140-184020019:-|nuORF 3.3196427980023873 0.4577323075863651 2 P{M(Oxidation (M))|F} 2 -1 18.583 0 0 1.5249 0 0 956.5554918609013 0 956.5554918609013 0 9.604093769761874 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 1.5249 - 12 + NaN NaN 134913.8 NaN 10396 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13551 61.084 NaN 96756 35 0 8555.1 0.261 + 12892 KYFTQFCVKF 10 47 437.55818875525773 NaN 0 437.5580139160156 PEAK HCD FTMS 0 0 0 13541 63038.33984375 1 0 0 10 Unmodified _KYFTQFCVKF_ ENSG00000141252|ENST00000437048|VPS53;ENST00000570359.1_1_17:440266-440455:-|nuORF;nc|ENSG00000141252|Q5VIR6-1|VPS53;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53 17.04857598603903 0.30454276825613047 2 {M(Oxidation (M))|F}C 2 8 7.9588 0 0 0.91155 0 0 230.78276723737014 389.2207430475219 620.0035102848921 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}C 0.91155 + + 24 + NaN NaN 100990.3 NaN 10397 3152 13541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13553 61.089 NaN 4124400 35 0 480430 0.327 + 27100 SYMGHFDLL 9 116 549.7498597197784 1097.4851665063568 2 549.750244140625 MULTI HCD FTMS 0 0 0 13552 3132591 0.37205635661643666 10 -0.2834281921386719 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 164.5152109175784 6.8106583686994766E-09 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 96.151 0 0 8.761 8.761 96.574 0 0 0 43.77691392997396 9.889917747712644 9.889917747712644 27.13297063202947 0 2.6549471895720984 2 1.8411290632962718 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHE[{M(Oxidation (M))|F}V]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L};{I|L}[YT]EHG{M(Oxidation (M))|F}[MT] 8.761;6.2887;4.0678;3.9074;3.4919;3.4788;3.3781;3.3625;2.8549;2.7167 +;+;-;-;-;-;-;-;-;- + 2960 + NaN NaN 645887.6 NaN 10398 3153 13552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13554 61.094 NaN 855690 35 0 164740 0.263 + 4595 EYLRQIFRL 9 70 413.2398812716732 1236.6978144152197 3 413.23992919921875 MULTI HCD FTMS 0 0 0 13552 204267.84375 0.2162252915710068 8 -0.24130630493164062 2 Unmodified _EYLRQIFRL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 19.361941925380144 0.1930734562688509 2 RQ{I|L}{M(Oxidation (M))|F}[R{I|L}] 6 3 19.002 0 0 1.5365 0 0 405.1903784316448 0 405.1903784316448 0 0.9543872825297974 0 0 0 0 0 0 0.7742275032520141 + RQ{I|L}{M(Oxidation (M))|F}[R{I|L}] 1.5365 + + 224 + NaN NaN 214730.3 NaN 10399 3153 13552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13555 61.097 NaN 293840 35 0 33138 0.261 + 19414 NPIGFVEKL 9 77 508.7923545057406 1015.5701560782812 2 508.7923889160156 MULTI HCD FTMS 0 0 0 13552 107934.84375 0.48532805520229605 4 -0.1232452392578125 3 Unmodified _NPIGFVEKL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 81.9152076656658 0.005232646987511684 2 NP{I|L}G{M(Oxidation (M))|F}VEK{I|L} 9 0 + 70.416 0 0 6.9337 6.9337 93.099 0 0 0 49.44714388449668 11.879617791072832 11.879617791072832 20.88599303722674 0 2.5356668758921828 0 0 0.4247425010840047 + + NP{I|L}G{M(Oxidation (M))|F}VEK{I|L};NP{I|L}G{M(Oxidation (M))|F}V[SG]{I|L}{I|L};[YT]{I|L}{I|L}HEK{I|L};NP{I|L}[K{I|L}][DV]{[MS]|[{M(Oxidation (M))|F}A]} 6.9337;4.8771;4.2107;2.1987 +;-;-;- + 272 + NaN NaN 138339 NaN 10400 3153 13552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13556 61.101 NaN 543710 35 0 55491 0.261 + 23217 RFSPPLRLF 9 91 566.8351572252279 1131.6557615172558 2 566.8351440429688 MULTI HCD FTMS 0 0 0 13552 153914.65625 0.9610253785623436 -1 0.036224365234375 4 Unmodified _RFSPPLRLF_ ENST00000371953.7_1_10:89623465-89623600:+|nuORF 41.95555342248728 0.056367691549927025 2 PSRE 4 7 36.16 0 0 3.1953 0 0 644.3981800763687 0 644.3981800763687 0 12.30352034935672 0 0 0 0.8252574989159953 0 0 0.3494850021680094 PSRE 3.1953 - 228 NaN NaN 171828.2 NaN 10401 3153 13552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13557 61.104 NaN 77257 35 0 39940 0.262 -1 0 34 481.26137176469183 480.25409529809184 1 481.26171875 MULTI HCD FTMS 0 0 0 13552 56719.05078125 0.004189763007116068 82 -1.8464012145996094 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 92497.2 NaN 10402 3153 13552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13559 61.109 NaN 657290 35 0 23182 0.327 + 21937 QEDLRTFSW 9 98 591.2830667274986 1180.5515805217972 2 591.283203125 MULTI HCD FTMS 0 0 0 13558 192446.9375 0.6040109144265022 2 -0.07080459594726562 1 Unmodified _QEDLRTFSW_ ENSG00000145907|ENST00000356245|G3BP1 57.72198328787511 0.020768266150574023 2 NEE{I|L}RT{M(Oxidation (M))|F}SW 9 2 + 48.546 0 0 4.1121 4.1121 88.476 0 0 0 35.35818632081762 3.6966623150499345 3.6966623150499345 18.88480365395423 0 0.6139829889124311 0 0.7614393726401688 0 NEE{I|L}RT{M(Oxidation (M))|F}SW;{[CT]|[{M(Oxidation (M))|F}G]}S[DP]R[{M(Oxidation (M))|F}E]{I|L}N;{[CT]|[{M(Oxidation (M))|F}G]}S{M(Oxidation (M))|F}TR{[HG]|PP}S{[DA]|[EG]};[YQ]{M(Oxidation (M))|F}TR{[HG]|PP}S{[DA]|[EG]};[YQ]{M(Oxidation (M))|F}[VS]A{[HG]|PP}S[VS];{[CT]|[{M(Oxidation (M))|F}G]}S{M(Oxidation (M))|F}[VS][HK]S{[DA]|[EG]};[YQ][DP]R[{M(Oxidation (M))|F}E]{I|L}N;{[CT]|[{M(Oxidation (M))|F}G]}S{M(Oxidation (M))|F}[VS]A{[HG]|PP}S[VS];[YQ]{M(Oxidation (M))|F}T[VG]{[HG]|PP}S[VS];[YQ]{M(Oxidation (M))|F}[VS][HK]S{[DA]|[EG]} 4.1121;2.5125;2.3138;1.9589;1.6926;1.4905;1.4622;1.2035;1.1826;1.1356 -;-;-;-;-;-;-;-;-;- 1583 + NaN NaN 183340.5 NaN 10403 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13560 61.113 NaN 549120 35 0 87545 0.261 + 5748 FPAGYMYPSM 10 73 598.2437384201628 1194.4729239071255 2 598.243896484375 MULTI HCD FTMS 0 0 0 13558 188781.734375 0.6471648019526522 15 -0.3381500244140625 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 92.8221339359638 0.000785806387253049 2 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 5 62.242 0 0 5.2108 0 0 63.99845867300002 0 63.99845867300002 0 51.00501891384965 0 0 0 0.8494850021680094 0 2.4361818737241734 0 TSP[VS]{M(Oxidation (M))|F}YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 5.2108 - 230 + NaN NaN 167333.7 NaN 10404 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13561 61.117 NaN 622930 35 0 78529 0.261 + 27371 SYSMIVNNL 9 86 528.7551913513045 1055.4958297694088 2 528.7553100585938 MULTI HCD FTMS 0 0 0 13558 135281.703125 0.15133383425864919 -22 0.6187019348144531 3 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 88.95385435242217 0.004553379958619559 2 {I|L}VNN{I|L} 5 4 49.349 0 0 4.6755 0 0 484.16063124824376 0 484.16063124824376 0 30.5640461762851 0 0 0 1.75 0 0 0.28872548999643577 + {I|L}VNN{I|L} 4.6755 + + 297 NaN NaN 177096.3 NaN 10405 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13562 61.12 NaN 219550 35 0 21853 0.261 + 12930 KYGPVFSF 8 63 472.7475320309645 943.4805111287291 2 472.7472839355469 MULTI HCD FTMS 0 0 0 13558 111289.0703125 0.2135973211104193 8 -0.24448394775390625 4 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 64.23631603340823 0.039635161348402365 2 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 5 49.693 0 0 5.267 0 0 544.301598827076 0 544.301598827076 0 36.175908674695165 0 0 0 1.5 0 0.8494850021680094 0 + {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.267 + + 146 + NaN NaN 120435.4 NaN 10406 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13563 61.127 NaN 368670 35 0 22195 0.368 + 23161 RFIPYTEEF 9 63 601.2984398065222 1200.5823266798443 2 601.29833984375 MULTI HCD FTMS 0 0 0 13558 84932.0703125 0.5337433580986053 3 -0.10367202758789062 5 Unmodified _RFIPYTEEF_ ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP 15.248480904072842 0.22861284681709862 2 TEE{M(Oxidation (M))|F} 4 5 20.768 0 0 1.7298 0 0 676.3661366193375 0 676.3661366193375 0 4.965598778126699 0 0 0 0.28872548999643577 0 0 0 + TEE{M(Oxidation (M))|F} 1.7298 + + 140 NaN NaN 146017.5 NaN 10407 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13564 61.132 NaN 285830 35 0 68525 0.264 + 4603 EYLSRHWLF 9 60 417.54867420919254 1249.6241932277776 3 417.5487365722656 MULTI HCD FTMS 0 0 0 13558 39598.6875 0.0412783526889575 18 -0.3609161376953125 6 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 4.897010918128616 0.31389406404703984 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3596 0 0 1084.5452727949635 0 1084.5452727949635 0 12.385606273598313 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3596 + + 20 + NaN NaN 132440.5 NaN 10408 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13565 61.135 NaN 215010 35 0 14987 0.261 + -1 YNSWFVLIM 9 48 594.7930318597923 1187.5715107863846 2 594.79248046875 MULTI HCD FTMS 0 0 0 13558 40163.80078125 0.0852754482936804 21 -0.384063720703125 7 Oxidation (M) _YNSWFVLIM(Oxidation (M))_ REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3 14.838274106304384 0.23215694253501695 2 [YN]S 3 -1 26.963 0 0 2.2704 0 0 0 820.4115694635374 820.4115694635374 5.993624753846092 0 0 0 0 0 2 0 0 [YN]S 2.2704 + + 12 + NaN NaN 121663.5 NaN 10409 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13566 61.139 NaN 257020 35 0 18781 0.261 -1 YPEEVSSMVL 10 50 585.2730587903282 1168.5315646474562 2 585.2730102539062 MULTI HCD FTMS 0 0 0 13558 34409.08203125 0.1682345043334772 -10 0.2819671630859375 8 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 18.1463463914782 0.3413772152514074 2 SS{M(Oxidation (M))|F}V{I|L} 5 -1 30.19 0 0 2.5835 0 0 617.2691971840858 0 617.2691971840858 0 13.199849938126889 0 0 0 1.274227503252014 0 0 0 SS{M(Oxidation (M))|F}V{I|L} 2.5835 + + 100 NaN NaN 129025.1 NaN 10410 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13567 61.142 NaN 265110 35 0 30054 0.261 + 4508 EYKDYIVF 8 76 538.7707443570926 NaN 0 538.760498046875 PEAK HCD FTMS 0 0 0 13558 11599.4130859375 1 0 0 9 Unmodified _EYKDYIVF_ tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1 7.910154910731844 0.38822285293237185 2 {I|L} 1 7 8.4949 0 0 0.78983 0 0 645.3312093178976 314.08115564517817 959.4123649630758 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.78983 + + 61 + NaN NaN 122850.5 NaN 10411 3154 13558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13569 61.147 NaN 2134400 35 0 271100 0.327 + 13326 KYMDVQFDF 9 98 604.7681496085214 1207.5217462838427 2 604.7685546875 MULTI HCD FTMS 0 0 0 13568 1147178.25 0.2577000063011003 14 -0.3001518249511719 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 136.39213081522345 0.00021731600835925866 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 86.855 0 0 7.1928 7.1928 86.648 0 0 0 1.5051499783199063 8.925449767853308 1.5051499783199063 1.5051499783199063 0 2.305462187404089 0 1.0629529932484498 1.110924374808178 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VDYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.1928;7.0682;6.9636;6.9636;6.4671;6.4303;6.3056;6.201;6.201;5.8869 +;-;-;-;-;-;-;-;-;- + 3807 NaN NaN 417343.9 NaN 10412 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13570 61.151 NaN 1138500 35 0 240050 0.261 + 29063 TYFRFQEEI 9 74 616.8012476011303 1231.5879422690605 2 616.8009643554688 MULTI HCD FTMS 0 0 0 13568 155798.578125 0.1280560904973582 18 -0.3301506042480469 2 Unmodified _TYFRFQEEI_ ENSG00000121858|ENST00000241261|TNFSF10 70.92866715596459 0.008787713425443074 2 [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L} 9 0 + 82.493 0 0 6.6981 6.6981 89.724 0 0 0 7.252857002959487 7.252857002959487 7.252857002959487 9.208187539523749 0 2.3076556684809653 2 0.4247425010840047 0 + + [YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}QEE{I|L};[YT]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}[AG]EE{I|L};[YT]{M(Oxidation (M))|F}RQ{M(Oxidation (M))|F}EE{I|L};[YT]{M(Oxidation (M))|F}R[AG]{M(Oxidation (M))|F}EE{I|L} 6.6981;5.9505;5.9006;5.1529 +;-;-;- + 284 NaN NaN 256471.7 NaN 10413 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13571 61.155 NaN 367740 35 0 26922 0.261 + 16828 LYECTGQFDF 10 78 611.7579772133546 1221.501401493509 2 611.7578735351562 MULTI HCD FTMS 0 0 0 13568 139913 0.44556267063570176 9 -0.24184417724609375 3 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 28.494509381512117 0.24525010509582015 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 60.288 0 0 4.9356 4.9356 82.918 0 0 0 1.6378675338813622 8.907854813243986 1.6378675338813622 1.6378675338813622 0 2.3494850021680094 0 0.5189301784845296 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T[MT]EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}[DV][AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T[MT]E[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}E{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.9356;4.8015;4.2452;4.1853;4.1111;4.0512;3.6063;3.4949;3.3608;3.3151 -;-;-;-;-;-;-;-;-;- 740 NaN NaN 139119.1 NaN 10414 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13572 61.158 NaN 306610 35 0 58239 0.261 -1 KYAMMFAEL 9 70 560.2641780464887 1118.5138031597774 2 560.2631225585938 MULTI HCD FTMS 0 0 0 13568 65419.05859375 0.1712434754326814 19 -0.3392791748046875 4 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}AE{I|L} 4 -1 45.745 0 0 4.0898 0 0 640.271776267775 0 640.271776267775 0 31.281446971601312 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}AE{I|L} 4.0898 + + 87 NaN NaN 128959.4 NaN 10415 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13573 61.162 NaN 314250 35 0 18624 0.261 + 34938 YSLLVKDKK 9 70 547.3325509063064 NaN 0 547.33203125 PEAK HCD FTMS 0 0 0 13568 91050.53125 0.3828145442137642 -9 0.2609596252441406 5 Unmodified _YSLLVKDKK_ REV__ENSG00000137033|ENST00000682010|IL33;REV__nc|ENSG00000137033|O95760-3|IL33 4.3292370932331545 0.2742679634796037 2 VVV 3 -1 14.693 0 0 1.3447 0 0 630.3981512737472 162.02291284732658 792.4210641210738 0 0 0 0 0 0 0 0 0 VVV 1.3447 - 76 + NaN NaN 149685.5 NaN 10416 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13574 61.165 NaN 291450 35 0 21225 0.261 + 382 AIMSSHYELN 10 68 582.770046757707 NaN 0 582.7706298828125 PEAK HCD FTMS 0 0 0 13568 37194.48828125 0.17358560329826517 -10 0.297149658203125 6 Unmodified _AIMSSHYELN_ REV__ENSG00000101365|ENST00000380843|IDH3B;REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF;REV__ENST00000492240.5_1_20:2639399-2640466:-|nuORF;REV__nc|ENSG00000101365|O43837-2|IDH3B;REV__nc|ENSG00000101365|O43837-3|IDH3B 14.405379775768559 0.3259538031337542 2 S[R{M(Oxidation (M))|F}]YE 5 -1 21.7 0 0 1.865 0 0 236.07912065584236 242.11484705142814 478.19396770727053 0 0 0 0 0 1.6382104921644451 0 0 0 S[R{M(Oxidation (M))|F}]YE 1.865 - 98 + NaN NaN 139024.8 NaN 10417 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13575 61.168 NaN 291340 35 0 31688 0.261 + 35097 YVAVQHFSL 9 63 532.2820805371144 1062.5496081410288 2 532.7692260742188 MULTI HCD FTMS 0 0 0 13568 29916.578125 0.09558031266036873 19 -0.3392791748046875 7 Unmodified _YVAVQHFSL_ ENSG00000125912|ENST00000246117|NCLN;nc|ENSG00000125912|Q969V3-2|NCLN 15.847184025352803 0.2234401846867398 2 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 6 35.221 0 0 3.3148 0 0 165.10850863674005 0 165.10850863674005 0 27.7738823421749 0 0 0 0 0 0.3494850021680094 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.3148 - 93 + NaN NaN 135245.2 NaN 10418 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13576 61.172 NaN 208950 35 0 11317 0.261 + -1 YNSWFVLIM 9 57 594.7930318597923 1187.5715107863846 2 594.78857421875 MULTI HCD FTMS 0 0 0 13568 44989.91796875 0.09552222022951835 22 -0.3891105651855469 8 Oxidation (M) _YNSWFVLIM(Oxidation (M))_ REV__nc|ENSG00000276141|Q1A5X7|WHAMMP3 25.399314129420986 0.14091189997036632 2 [YN]SN 4 -1 35.177 0 0 2.9621 0 0 0 706.3740328424436 706.3740328424436 14.208187539523749 0 0 0 0 0.3494850021680094 2 0 0 [YN]SN 2.9621 - 50 + NaN NaN 122831.7 NaN 10419 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13577 61.175 NaN 142440 35 0 41389 0.261 -1 0 49 516.3013490867068 515.2940726201067 1 516.3005981445312 MULTI HCD FTMS 0 0 0 13568 53698.12890625 0.21973778310176237 12 -0.283843994140625 9 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111220.8 NaN 10420 3155 13568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13579 61.18 NaN 1984700 35 0 360710 0.327 + 24355 RYIDRIHIFF 10 74 460.5908872349479 1378.7508323050438 3 460.59100341796875 MULTI HCD FTMS 0 0 0 13578 736713.25 0.07764797274665251 20 -0.3207206726074219 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 30.43146612281011 0.22844141563887774 2 R[H{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 51.159 0 0 3.7105 0 0 547.2750628152268 0 547.2750628152268 0 44.16895006820745 0 0 0 1.9247425010840047 0 0 0.3494850021680094 + R[H{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.7105 + + 90 NaN NaN 380608.9 NaN 10421 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13580 61.184 NaN 572720 35 0 59174 0.261 + 18162 MPDGQFKDISL 11 83 625.8079181236785 1249.601283314157 2 625.8081665039062 MULTI HCD FTMS 0 0 0 13578 423718.8125 0.9430150926208437 3 -0.09527206420898438 2 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 72.27630555110993 0.013120092572109072 2 {NN|[MP]|[D{I|L}]|[EV]}DGQ{M(Oxidation (M))|F}KD{I|L} 9 2 81.723 0 0 6.5399 0 0 0 215.1041807360563 215.1041807360563 65.77577916518271 0 0 0 0 2.5356668758921828 1.6989700043360187 0.6747425010840047 0.4247425010840047 + {NN|[MP]|[D{I|L}]|[EV]}DGQ{M(Oxidation (M))|F}KD{I|L} 6.5399 + + 1490 NaN NaN 190238.7 NaN 10422 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13581 61.188 NaN 635480 35 0 59170 0.261 + 17373 LYQHEINLF 9 85 588.8060870032504 1175.5976210733006 2 588.8062744140625 MULTI HCD FTMS 0 0 0 13578 248825.234375 0.6691239874051125 3 -0.09527206420898438 3 Unmodified _LYQHEINLF_ ENSG00000115816|ENST00000234170|CEBPZ 60.07390631473393 0.0174780869009295 2 {[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}N{I|L}{M(Oxidation (M))|F} 9 2 + 65.652 0 0 5.5846 5.5846 83.743 0 0 0 4.260139618586365 14.729524540212324 4.260139618586365 1.2371250542002343 0 1.3494850021680094 1.5228787452803376 0 0.805462187404089 {[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]EQV{I|L}{M(Oxidation (M))|F};[Y{I|L}]QHE{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]QHEQV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WQ]E[AG]V{I|L}{M(Oxidation (M))|F};[Y{I|L}]QHE{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]QHE[AG]V{I|L}{M(Oxidation (M))|F};[YQ]{I|L}HE{I|L}N{I|L}{M(Oxidation (M))|F};[YQ]{I|L}HEQV{I|L}{M(Oxidation (M))|F} 5.5846;5.4793;5.2222;5.117;4.8013;4.6961;4.4389;4.3337;4.0331;3.9278 -;-;+;-;-;-;-;-;-;- + 897 NaN NaN 203371.7 NaN 10423 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13582 61.191 NaN 516600 35 0 85060 0.261 -1 VYAALMIFDF 10 82 603.2992016658338 1204.5838503984676 2 603.29931640625 MULTI HCD FTMS 0 0 0 13578 177851.9375 0.04430413466915217 94 -2.0702552795410156 4 Oxidation (M) _VYAALM(Oxidation (M))IFDF_ ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000148408|Q00975-2|CACNA1B 26.88365393820708 0.25965138844209146 2 [YV]ER[{I|L}T]DY 8 -1 35.128 0 0 2.9162 0 0 0 162.0547964368092 162.0547964368092 11.596427723538838 0 0 0 0 1.6989700043360187 2 0.8807196863200843 0 [YV]ER[{I|L}T]DY 2.9162 - 324 NaN NaN 175930.1 NaN 10424 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13583 61.194 NaN 2204100 35 0 194990 0.264 -1 YDSCCVIDKIT 11 89 439.5337764924605 1315.5795000775815 3 439.8680419921875 MULTI HCD FTMS 0 0 0 13578 369606.09375 0.2026000562814335 -6 0.18563079833984375 5 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 33.82136114134338 0.17674243982743054 2 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 -1 87.885 0 0 6.6804 0 0 0 128.07172571353752 128.07172571353752 74.15668775632469 0 0 0 0 2.2302046884880937 2 1.5 0.3494850021680094 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 6.6804 - 482 + NaN NaN 420906.9 NaN 10425 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13584 61.198 NaN 313170 35 0 57277 0.261 + 21083 PMYMAPEVI 9 50 525.7530247926215 1049.491496652043 2 525.7530517578125 MULTI HCD FTMS 0 0 0 13578 86316.203125 0.7159603115278727 1 -0.032867431640625 6 Unmodified _PMYMAPEVI_ ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1;ULK1|p.S184F|1|0.21|ENSG00000177169|chr12:131908958-131908958|C/T|missense_variant 23.1484247019978 0.1603590852062899 2 EV{I|L} 3 6 43.5 0 0 4.1449 0 0 690.284471580275 0 690.284471580275 0 29.5205343810445 0 0 0 1 0 0.7302046884880937 0 + EV{I|L} 4.1449 + + 35 NaN NaN 148298.3 NaN 10426 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13585 61.201 NaN 714150 35 0 76935 0.261 + 5281 FFFFLFSFLFF 11 76 503.59306843662836 1507.757375910085 3 503.5931701660156 MULTI HCD FTMS 0 0 0 13578 142311.9375 0.015849878435058817 60 -1.2136573791503906 7 Unmodified _FFFFLFSFLFF_ REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF 18.721224879955976 0.29396376558286563 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 38.333 0 0 2.5424 0 0 1082.5253095371115 0 1082.5253095371115 0 25.373767320247595 0 0 0 1.2134679910804405 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5424 + + 94 NaN NaN 198843.6 NaN 10427 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13586 61.204 NaN 152520 35 0 28478 0.261 + 29229 TYLITGAAGF 10 52 507.26863247149 1012.52271200978 2 507.26849365234375 MULTI HCD FTMS 0 0 0 13578 53548.546875 0.6412450655655882 3 -0.09527206420898438 8 Unmodified _TYLITGAAGF_ tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1 19.256988751693697 0.33098864134661865 2 G{M(Oxidation (M))|F} 2 8 23.628 0 0 2.3336 0 0 790.4227039304816 0 790.4227039304816 0 19.648415687162952 0 0 0 0.805462187404089 0 0 0 + G{M(Oxidation (M))|F} 2.3336 + + 23 + NaN NaN 124012.1 NaN 10428 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13587 61.208 NaN 289940 35 0 16451 0.261 + -1 GFFFFIDLM 9 63 576.773374431848 NaN 0 576.7737426757812 PEAK HCD FTMS 0 0 0 13578 20769.185546875 0.26311455120431965 27 -0.4668617248535156 9 Oxidation (M) _GFFFFIDLM(Oxidation (M))_ REV__ENST00000358127.8_1_9:36833483-36833678:-|nuORF 4.3292370932331545 0.2742679634796037 2 {M(Oxidation (M))|F}W 2 -1 10.969 0 0 0.95257 0 0 203.09403782678334 612.3012179010374 815.3952557278208 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}W 0.95257 - 9 + NaN NaN 135651.2 NaN 10429 3156 13578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13589 61.213 NaN 687240 35 0 135460 0.327 -1 LYIVHPTMF 9 79 568.7942762627684 1135.5739995923368 2 569.3060913085938 MULTI HCD FTMS 0 0 0 13588 33378.9921875 0.1352869339028215 24 -0.3819923400878906 1 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ ENSG00000175220|ENST00000311956|ARHGAP1 38.15118350030904 0.07383188072201104 2 [Y{I|L}]{I|L}VH[EC]{I|L}{M(Oxidation (M))|F} 9 -1 [Y{I|L}]{I|L} + + 35.208 23.301 5.9863 3.1005 3.1005 60.149 0 0 0 0 -0.4330502818412185 -0.4330502818412185 0 0 1.1307196863200843 0 0 0 [Y{I|L}]{I|L}VH[EC]{I|L}{M(Oxidation (M))|F} 3.1005 - 319 + NaN NaN 190825.9 NaN 10430 3157 13588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13590 61.217 NaN 333300 35 0 13899 0.261 + 14462 LETLEPWVQ 9 84 557.7951714636616 NaN 0 557.7837524414062 PEAK HCD FTMS 0 0 0 13588 8240.69140625 0.6215925809622158 -1 0.032867431640625 2 Unmodified _LETLEPWVQ_ REV__ENSG00000156345|ENST00000325303|CDK20;REV__ENST00000486228.7_1_9:90582379-90585754:-|nuORF;REV__nc|ENSG00000156345|Q8IZL9-3|CDK20;REV__nc|ENSG00000156345|Q8IZL9-4|CDK20;REV__nc|ENSG00000156345|Q8IZL9-5|CDK20 15.847184025352803 0.21527282152051216 2 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}KG{M(Oxidation (M))|F} 6 -1 18.237 0 0 1.6377 0 0 130.13123811167299 239.10361658267814 369.23485469435116 0 0 0 0 0 0 0 0.4247425010840047 0 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}KG{M(Oxidation (M))|F} 1.6377 - 253 + NaN NaN 140393 NaN 10431 3157 13588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13591 61.221 NaN 234720 35 0 22163 0.261 + 3843 EPIFEDVMM 9 69 571.7426462101004 NaN 0 571.7418823242188 PEAK HCD FTMS 0 0 0 13588 24077.791015625 0.47761930439408884 -1 0.032867431640625 3 2 Oxidation (M) _EPIFEDVM(Oxidation (M))M(Oxidation (M))_ ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion 48.345845343767074 0.05150985380647864 2 R{M(Oxidation (M))|F}EDV{M(Oxidation (M))|F} 6 4 35.979 0 0 3.152 0 0 183.0656446188388 162.0229891412719 345.0886337601107 0 0 0 0 0 1.5 0 0 0 R{M(Oxidation (M))|F}EDV{M(Oxidation (M))|F} 3.152 - 88 + NaN NaN 128123.9 NaN 10432 3157 13588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13592 61.224 NaN 279360 35 0 19582 0.261 + 34964 YSPSYYWI 8 63 539.7464207642068 1077.4782885952136 2 540.2484130859375 MULTI HCD FTMS 0 0 0 13588 49097.23046875 0.3091731679934982 -6 0.1889801025390625 4 Unmodified _YSPSYYWI_ ENSG00000007908|ENST00000333360|SELE;SELE|p.Q346Rfs*33|1|0.19|ENSG00000007908|chr1:169729240-169729240|G/-|frameshift_variant 13.50788311687929 0.4944073034352369 2 R{I|L}Y 3 7 16.682 0 0 1.5483 0 0 627.2189329817355 0 627.2189329817355 0 -1.2763625255165287 -1.2763625255165287 0 0 0 0 0 0 R{I|L}Y 1.5483 - 105 + NaN NaN 137525.7 NaN 10433 3157 13588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13593 61.227 NaN 195950 35 0 10813 0.261 + -1 LFLHPGCLQ 9 69 542.7862504256609 1083.5579479181217 2 543.3009643554688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _LFLHPGC(Carbamidomethyl (C))LQ_ REV__ENST00000323078.7_1_7:150034543-150034807:+|nuORF 8.593279151180031 0.2858735984551981 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.50616 0 0 508.36228249019047 425.14273195396134 933.5050144441518 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.50616 + + 17 + NaN NaN 116771 NaN 10434 3157 13588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13594 61.231 NaN 229430 35 0 52991 0.262 + 4556 EYLKNIIYRF 10 54 453.5869932615706 1357.739150384912 3 453.5870666503906 MULTI HCD FTMS 0 0 0 13588 25512.052734375 0.2124900857152506 8 -0.19211959838867188 6 Unmodified _EYLKNIIYRF_ ENSG00000179562|ENST00000321407|GCC1 3.5870582119611467 0.4563168352879256 2 {M(Oxidation (M))|F} 1 9 13.979 0 0 1.0296 0 0 1192.6603520224103 0 1192.6603520224103 0 5.3959062302381255 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.0296 + + 14 + NaN NaN 120691.8 NaN 10435 3157 13588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13596 61.235 NaN 3001600 35 0 341330 0.327 + 27101 SYMGHFDLL 9 116 549.7498597197784 1097.4851665063568 2 549.7501831054688 MULTI HCD FTMS 0 0 0 13595 2320402.25 0.2755930815799388 15 -0.24160003662109375 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 141.82661023413823 1.746659319327287E-05 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 89.012 0 0 8.1105 8.1105 96.676 0 0 0 37.887050800742585 9.889917747712644 9.889917747712644 47.065629270416025 0 2.110924374808178 2 1.7302046884880937 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}YS{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{I|L}{M(Oxidation (M))|F}YS;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[HG]|PP}{I|L}{M(Oxidation (M))|F}SY;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]YS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YR]{M(Oxidation (M))|F}SY{I|L} 8.1105;3.822;3.5867;3.5009;3.3873;2.9563;2.9102;2.8741;2.8704;2.7268 +;-;-;-;-;-;-;-;-;- + 2783 + NaN NaN 562723.8 NaN 10436 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13597 61.24 NaN 695190 35 0 138980 0.261 + 16038 LPSEDPYQL 9 64 531.2614286415064 1060.5083043498128 2 531.2611694335938 MULTI HCD FTMS 0 0 0 13595 322649.34375 0.2689431176647288 -7 0.21185684204101562 2 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 27.628801355627647 0.12213550946336599 2 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L} 9 2 + 50.384 0 0 4.7509 4.7509 85.642 0 0 0 4.326440444176214 38.701746761134714 4.326440444176214 9.06295947543775 0 1.2302046884880937 0 0 0.6989700043360187 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L};[VP]{[ET]|[MV]}DPYQ{I|L};{[QN]|[E{I|L}]|[KN]}[PS]DPY[AG]{I|L};[VP]{[ET]|[MV]}DPY[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}YM[{M(Oxidation (M))|F}T]Q{I|L} 4.7509;3.8964;3.8827;2.6985;1.7556 -;-;-;-;- 126 NaN NaN 199674.6 NaN 10437 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13598 61.244 NaN 447240 35 0 22107 0.261 + 34583 YPNERFELL 9 77 590.8033765030825 1179.592200072965 2 590.8037719726562 MULTI HCD FTMS 0 0 0 13595 140044.4375 0.6530138757845884 6 -0.15329360961914062 3 Unmodified _YPNERFELL_ ENSG00000163960|ENST00000296328|UBXN7 47.7319792270244 0.034743597693959835 2 YPNE 4 5 41.305 0 0 3.5016 0 0 0 673.3671969049436 673.3671969049436 10.106763564740149 0 0 0 0 0.6861818737241735 1.3979400086720375 0.3252574989159953 0 + YPNE 3.5016 + + 433 + NaN NaN 167318.5 NaN 10438 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13599 61.247 NaN 337160 35 0 49563 0.262 + 10657 IPVESEVNL 9 53 500.271541979234 998.528531025268 2 500.2714538574219 MULTI HCD FTMS 0 0 0 13595 120199.3359375 0.1462835931379898 -6 0.18234634399414062 4 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 64.23631603340823 0.01165516075559909 2 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}VN{I|L} 9 3 + 53.125 0 0 5.3203 5.3203 92.077 0 0 0 2.490123401892234 36.99839547105397 2.490123401892234 53.12498597710329 0 0.9247425010840047 0 1.360924374808178 0.7134679910804405 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}VN{I|L} 5.3203 - 46 NaN NaN 141305.5 NaN 10439 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13600 61.25 NaN 373610 35 0 113440 0.261 + 30227 VINGRTKAMVA 11 53 580.3346872533688 1158.6548215735374 2 580.3348388671875 MULTI HCD FTMS 0 0 0 13595 95564.0859375 0.04245785454496987 22 -0.339752197265625 5 Unmodified _VINGRTKAMVA_ ENSG00000269858|ENST00000303961|EGLN2;nc|ENSG00000269858|Q96KS0-2|EGLN2 8.155526934196011 0.3831532958467648 2 [{I|L}V][QP][{I|L}A]{M(Oxidation (M))|F}V 8 6 29.486 0 0 2.5449 0 0 0 288.0992525690063 288.0992525690063 10.902887499330731 0 0 0 0 1.4247425010840047 2 0 0 [{I|L}V][QP][{I|L}A]{M(Oxidation (M))|F}V 2.5449 - 42 + NaN NaN 146481.1 NaN 10440 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13601 61.253 NaN 169740 35 0 11824 0.261 -1 YRGEMCFFD 9 51 620.7433089567032 NaN 0 620.7643432617188 PEAK HCD FTMS 0 0 0 13595 16213.5673828125 1 0 0 6 Carbamidomethyl (C),Oxidation (M) _YRGEM(Oxidation (M))C(Carbamidomethyl (C))FFD_ ENSG00000078596|ENST00000373298|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;nc|ENSG00000078596|O43736-2|ITM2A 4.3292370932331545 0.2742679634796037 2 D{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F} 6 -1 32.652 0 0 2.6343 0 0 165.03769373088636 277.0826815240844 442.1203752549708 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F} 2.6343 - 110 + NaN NaN 116061.3 NaN 10441 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13602 61.257 NaN 98400 35 0 12281 0.264 -1 0 39 424.08157144010426 423.07429497350427 1 424.08172607421875 MULTI HCD FTMS 0 0 0 13595 76113.6796875 0.8715460165836648 19 -0.30055999755859375 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105351.7 NaN 10442 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13603 61.26 NaN 192040 35 0 15621 0.261 + 19415 NPIGFVEKL 9 59 508.7923545057406 1015.5701560782812 2 508.792236328125 MULTI HCD FTMS 0 0 0 13595 41956.16015625 0.18865549719562988 9 -0.19529342651367188 8 Unmodified _NPIGFVEKL_ ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-4|ZZZ3 19.361941925380144 0.1930734562688509 2 E[K{I|L}] 3 6 10.335 0 0 1.0176 0 0 627.3401966779312 0 627.3401966779312 0 9.365429718850732 0 0 0 0.28872548999643577 0 0 0 + E[K{I|L}] 1.0176 + + 29 NaN NaN 113119.1 NaN 10443 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13604 61.263 NaN 234090 35 0 9211 0.261 + -1 MARMLTHIC 9 82 582.770046757707 NaN 0 582.769287109375 PEAK HCD FTMS 0 0 0 13595 47316.0703125 0.22082273450818984 -7 0.21185684204101562 9 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))ARM(Oxidation (M))LTHIC(Carbamidomethyl (C))_ REV__ENSG00000039139|ENST00000265104|DNAH5 10.823927491677226 0.2427956001690155 2 ST{I|L} 3 -1 21.682 0 0 1.8635 0 0 236.08366593605382 623.2675956212345 859.3512615572884 0 0 0 0 0 1 0 0 0 ST{I|L} 1.8635 - 101 + NaN NaN 140684.8 NaN 10444 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13605 61.267 NaN 119610 35 0 7065.4 0.262 + 35281 YVVHRNVT 8 56 494.2720274085285 986.529501883857 2 494.27130126953125 MULTI HCD FTMS 0 0 0 13595 24701.58984375 0.7348070593271566 1 -0.03952789306640625 10 Unmodified _YVVHRNVT_ ENSG00000183798|ENST00000332312|EMILIN3 14.581692164780916 0.48650662947107914 2 [YV][HV][RN]S{I|L} 8 2 + 29.671 0 0 3.0076 3.0076 80.716 0 0 0 7.904849854573683 5.858565581929653 5.858565581929653 1.3206844429176101 0 0.3807196863200844 2 0 0 [YV][HV][RN]S{I|L};[YV]{I|L}[HT]{[QN]|[E{I|L}]|[KN]}{I|L} 3.0076;2.8737 -;- 34 NaN NaN 103135.8 NaN 10445 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13606 61.27 NaN 135150 35 0 18979 0.261 + -1 ECHDGAYG 8 48 454.66256482258734 NaN 0 454.6626281738281 PEAK HCD FTMS 0 0 0 13595 26161.03125 0.5120269165618997 -5 0.14612197875976562 11 Carbamidomethyl (C) _EC(Carbamidomethyl (C))HDGAYG_ REV__ENSG00000101384|ENST00000254958|JAG1;REV__nc|ENSG00000101384|P78504-2|JAG1 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109281.6 NaN 10446 3158 13595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13608 61.275 NaN 3959300 35 0 496910 0.327 + 2911 DYSPYFKTI 9 118 567.2793230526404 1132.5440931720807 2 567.2791748046875 MULTI HCD FTMS 0 0 0 13607 1770436.125 0.011300808076823501 -8 0.2513847351074219 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 2 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 115.98 0 0 10.241 10.241 91.092 0 0 0 3.216700302810878 3.216700302810878 3.216700302810878 3.216700302810878 0 3.004432191740108 2 2.3873453591370684 0 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};SYDPY{M(Oxidation (M))|F}KT{I|L} 10.241;9.9566;8.8191;8.2594;8.0324;7.5245;7.1219;6.895;6.7776;6.1428 +;+;-;-;-;-;-;-;-;- + 2558 + NaN NaN 704734.6 NaN 10447 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13609 61.279 NaN 1086900 35 0 197460 0.261 + 27372 SYSMIVNNL 9 102 528.7551913513045 1055.4958297694088 2 528.7553100585938 MULTI HCD FTMS 0 0 0 13607 405936.5625 0.454103807461219 -17 0.5037689208984375 2 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 118.0683919894846 0.0016252157255221692 2 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 70.517 0 0 6.6809 6.6809 89.7 0 0 0 2.7682731207614495 48.460696996448576 2.7682731207614495 9.208187539523749 0 2.5356668758921828 0 0.805462187404089 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};[YV]{M(Oxidation (M))|F}T[VS]NN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VS]NN{I|L};[YV]AE[KQ]STM;[YV]PWD[YT]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[VP][HM]TM;{[{M(Oxidation (M))|F}C]|[YS]}S{[QN]|[E{I|L}]|[KN]}[KC]N{I|L} 6.6809;5.8085;5.8085;4.7179;4.6091;3.4248;2.7681;2.6347;1.6718;1.5854 +;-;-;-;-;-;-;-;-;- + 818 NaN NaN 264491.2 NaN 10448 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13610 61.283 NaN 437420 35 0 77463 0.261 + 5749 FPAGYMYPSM 10 76 598.2437384201628 1194.4729239071255 2 598.2438354492188 MULTI HCD FTMS 0 0 0 13607 205975.5625 0.7061071589034587 20 -0.2809104919433594 3 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 74.42276476219924 0.012344753082416305 2 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 9 5 + 72.118 0 0 6.0377 6.0377 91.473 0 0 0 9.388793896675267 9.388793896675267 9.388793896675267 20.044321917401078 0 2.1549471895720984 1.5228787452803376 0.4247425010840047 0 [YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][QP]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY]Y{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};YYW{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YY{[DA]|[EG]}{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};YY{[DA]|[EG]}{M(Oxidation (M))|F}[{I|L}A]W{M(Oxidation (M))|F} 6.0377;4.3596;4.3035;3.917;3.5875;3.5021;1.9872;1.9363;0.7351;0.59324 -;-;-;-;-;-;-;-;-;- 274 NaN NaN 153319.8 NaN 10449 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13611 61.286 NaN 152150 35 0 11220 0.263 + 12931 KYGPVFSF 8 50 472.7475320309645 943.4805111287291 2 472.74755859375 MULTI HCD FTMS 0 0 0 13607 54340.6796875 0.10429616831173828 13 -0.1948394775390625 4 Unmodified _KYGPVFSF_ CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1 39.957323273324995 0.23147789240432073 2 {[HG]|PP}P[RP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 4 {[HG]|PP} + + 50.01 1.0033 0.51689 5.3006 5.3006 62.758 0 0 0 0 38.883578386120234 0 0 0 1.9247425010840047 0 0.7742275032520141 0 {[HG]|PP}P[RP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.3006 - 60 + NaN NaN 105203.2 NaN 10450 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13612 61.29 NaN 208060 35 0 42967 0.261 -1 KYAMMFAEL 9 54 560.2641780464887 1118.5138031597774 2 560.7658081054688 MULTI HCD FTMS 0 0 0 13607 32332.099609375 0.12611804776683913 21 -0.30022430419921875 5 Oxidation (M) _KYAM(Oxidation (M))MFAEL_ ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 9.38312468134398 0.279288223203164 2 {[QN]|[E{I|L}]|[KN]}[PA]DD{M(Oxidation (M))|F}AE{I|L} 10 -1 + 34.27 0 0 3.0639 3.0639 88.721 0 0 0 0.02960906985030931 17.816206019771528 0.02960906985030931 34.26985621489237 0 0.3807196863200844 0 0.3807196863200844 0 {[QN]|[E{I|L}]|[KN]}[PA]DD{M(Oxidation (M))|F}AE{I|L} 3.0639 - 45 NaN NaN 120992.3 NaN 10451 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13613 61.293 NaN 221530 35 0 21519 0.261 + 33592 YIQSYDHGT 9 69 542.2387913925518 NaN 0 542.2529296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YIQSYDHGT_ DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant;ENSG00000136770|ENST00000376980|DNAJC1 8.593279151180031 0.2536050107310812 2 P 1 9 6.9897 0 0 0.64572 0 0 113.05878498656519 869.3297606663538 982.388545652919 0 0 0 0 0 0 0 0 0 P 0.64572 - 11 + NaN NaN 122049.7 NaN 10452 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13614 61.296 NaN 143700 35 0 14113 0.261 -1 YICAMSVCCT 10 52 555.2110900689258 NaN 0 555.2113037109375 PEAK HCD FTMS 0 0 0 13607 20350.859375 0.35773654670130445 -3 0.09527206420898438 7 Oxidation (M) _YICAM(Oxidation (M))SVCCT_ chr2:142883035-142885349|162|16.54|0.23|6.19|+|1|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|3 1.6526216038709556 0.33876987398426067 2 C 1 -1 3.9794 0 0 0.35902 0 0 62.001413670291704 940.3715304010374 1002.3729440713291 0 0 0 0 0 0 0 0 0 C 0.35902 + + 2 + NaN NaN 116558.1 NaN 10453 3159 13607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13616 61.301 NaN 1537800 35 0 194350 0.327 + 13327 KYMDVQFDF 9 77 604.7681496085214 1207.5217462838427 2 604.768798828125 MULTI HCD FTMS 0 0 0 13615 943938.4375 0.21204458966302817 19 -0.2547187805175781 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 103.82355648334675 0.003950725192926219 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 85.927 0 0 7.1159 7.1159 90.476 0 0 0 4.137342758552691 37.91350118484745 4.137342758552691 9.208187539523749 0 2.305462187404089 0 0.7742275032520141 1.1307196863200843 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[AG]VY{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[AG]YV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}DK{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QVY{M(Oxidation (M))|F}DK{M(Oxidation (M))|F} 7.1159;6.3534;5.9254;5.8682;5.7796;5.7224;4.8162;4.6704;4.6574;4.5404 +;-;-;-;-;-;-;-;-;- + 2024 NaN NaN 328042.5 NaN 10454 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13617 61.306 NaN 281060 35 0 19615 0.261 + 16829 LYECTGQFDF 10 52 611.7579772133546 1221.501401493509 2 611.7584228515625 MULTI HCD FTMS 0 0 0 13615 80839.0625 0.2574376117958046 14 -0.18500900268554688 2 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 17.44264345198275 0.3479594151168503 2 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 51.33 0 0 4.2022 0 0 305.1373768537125 0 305.1373768537125 0 51.33040103922362 0 0 0 2.3494850021680094 0 0 0 {M(Oxidation (M))|F}[DV]Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.2022 - 106 NaN NaN 136274.4 NaN 10455 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13618 61.309 NaN 302120 35 0 30902 0.261 -1 YPEEVSSMVL 10 58 585.2730587903282 1168.5315646474562 2 585.2742919921875 MULTI HCD FTMS 0 0 0 13615 137081.5 0.6702253255360028 -4 0.12146377563476562 3 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8 22.736283301280096 0.29844449404982915 2 S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 5 -1 36.466 0 0 3.1207 0 0 617.2691150471467 0 617.2691150471467 0 30.5187030902718 0 0 0 1.4247425010840047 0 0 0 S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L} 3.1207 + + 70 NaN NaN 138550.3 NaN 10456 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13619 61.312 NaN 456770 35 0 19785 0.261 + 31417 VYAQVARLF 9 84 533.8058982867244 1065.5972436402487 2 533.8059692382812 MULTI HCD FTMS 0 0 0 13615 92977.2265625 0.868277717311923 1 -0.0294647216796875 4 Unmodified _VYAQVARLF_ ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF 85.27202061508552 0.004649858145912257 2 [YV]AQVAR{I|L}{M(Oxidation (M))|F} 9 0 + 82.551 0 0 7.7469 7.7469 89.636 0 0 0 12.375977872132324 54.886146764301884 12.375977872132324 6.465912507003608 0 3.1237125054200234 1.5228787452803376 0 0.3054621874040891 + + [YV]AQVAR{I|L}{M(Oxidation (M))|F};[YV]AVQAR{I|L}{M(Oxidation (M))|F};[YV]A[AG]VAR{I|L}{M(Oxidation (M))|F};[YV]AV[AG]AR{I|L}{M(Oxidation (M))|F};[{I|L}V][YG]QAR{I|L}{M(Oxidation (M))|F};[{I|L}V][YG][AG]AR{I|L}{M(Oxidation (M))|F};[{I|L}V][CS][KT]R{I|L}{M(Oxidation (M))|F} 7.7469;7.1402;6.5961;5.9894;4.0021;2.8513;2.5423 +;-;-;-;-;-;- + 792 NaN NaN 161638.6 NaN 10457 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13620 61.316 NaN 283410 35 0 38549 0.261 + 9355 HPSFPEVSF 9 54 523.7510099836986 1045.4874670341972 2 523.7513427734375 MULTI HCD FTMS 0 0 0 13615 83290.84375 0.5032071750399475 -2 0.0657196044921875 5 Unmodified _HPSFPEVSF_ ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR 54.773552608820026 0.024892918755467567 2 VS{M(Oxidation (M))|F} 3 6 45.445 0 0 4.3468 0 0 694.3068367406983 0 694.3068367406983 0 41.46591250700361 0 0 0 1.5 0 0.4247425010840047 0 + VS{M(Oxidation (M))|F} 4.3468 + + 79 NaN NaN 136587.7 NaN 10458 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13621 61.319 NaN 209100 35 0 12098 0.261 + 16435 LSMGSASYYDF 11 47 620.7629310876104 1239.5113092420206 2 621.2646484375 MULTI HCD FTMS 0 0 0 13615 29086.30078125 0.20873873256635656 19 -0.2547187805175781 6 Unmodified _LSMGSASYYDF_ REV__ENSG00000157103|ENST00000287766|SLC6A1 5.296884461304476 0.39569033063702824 2 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 50.477 0 0 4.0723 0 0 280.10551650215 0 280.10551650215 0 43.487219860018556 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QEQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.0723 - 68 NaN NaN 123065.3 NaN 10459 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13622 61.322 NaN 380080 35 0 37012 0.263 -1 IYGWRKRCLYL 11 67 509.9451442466557 1526.813603340167 3 509.9460144042969 MULTI HCD FTMS 0 0 0 13615 72912.34375 0.5290529654987886 -2 0.0657196044921875 7 Carbamidomethyl (C) _IYGWRKRC(Carbamidomethyl (C))LYL_ ENSG00000102683|ENST00000218867|SGCG 4.715918219556657 0.3982382512160552 2 YP{M(Oxidation (M))|F} 3 -1 47.536 0 0 3.1134 0 0 0 1116.6047874401515 1116.6047874401515 43.556518697048716 0 0 0 0 0.6109243748081782 1.5228787452803376 0 0 YP{M(Oxidation (M))|F} 3.1134 - 65 + NaN NaN 148002.7 NaN 10460 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13623 61.326 NaN 484010 35 0 33045 0.261 -1 FFDAELSQM 9 74 552.2395948683546 NaN 0 552.239501953125 PEAK HCD FTMS 0 0 0 13615 23197.609375 0.5119090247228095 5 -0.10352325439453125 8 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 13.042465956692817 0.23204487237355156 2 {M(Oxidation (M))|F}{I|L}V{I|L} 4 -1 12.907 0 0 1.1708 0 0 131.92163282345592 495.2683526372563 627.1899854607123 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}V{I|L} 1.1708 - 87 + NaN NaN 168770.2 NaN 10461 3160 13615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13625 61.331 NaN 1619800 35 0 289130 0.327 + 24356 RYIDRIHIFF 10 72 460.5908872349479 1378.7508323050438 3 460.5910339355469 MULTI HCD FTMS 0 0 0 13624 551429.1875 0.05811943591717502 25 -0.38713836669921875 1 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 27.088373467376528 0.2577365110389662 2 H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 6 42.713 0 0 3.0979 0 0 816.4615999825813 0 816.4615999825813 0 35.72301001672965 0 0 0 1.5 0 0 0 + H{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0979 + + 66 + NaN NaN 330473.1 NaN 10462 3161 13624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13626 61.335 NaN 309730 35 0 23948 0.261 + 18163 MPDGQFKDISL 11 74 625.8079181236785 1249.601283314157 2 626.3098754882812 MULTI HCD FTMS 0 0 0 13624 138768.71875 0.44729374431263147 -5 0.15092849731445312 2 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 66.54955139489424 0.018668943975145805 2 M{M(Oxidation (M))|F}KD{I|L}S{I|L} 7 4 67.255 0 0 5.3821 0 0 397.16221816230626 0 397.16221816230626 0 34.06759162565898 0 0 0 1.4247425010840047 0 1.031234684152075 0 M{M(Oxidation (M))|F}KD{I|L}S{I|L} 5.3821 - 128 NaN NaN 138563.7 NaN 10463 3161 13624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13627 61.339 NaN 324880 35 0 14768 0.262 + 34965 YSPSYYWI 8 67 539.7464207642068 1077.4782885952136 2 539.746337890625 MULTI HCD FTMS 0 0 0 13624 67263.328125 0.5231417943136738 -4 0.11806106567382812 3 Unmodified _YSPSYYWI_ ENSG00000007908|ENST00000333360|SELE;SELE|p.Q346Rfs*33|1|0.19|ENSG00000007908|chr1:169729240-169729240|G/-|frameshift_variant 13.50788311687929 0.4944073034352369 2 NN{I|L} 3 7 9.8329 0 0 0.91258 0 0 718.302049705275 0 718.302049705275 0 0.5411342943241255 0 0 0 0 0 0 0 NN{I|L} 0.91258 - 55 NaN NaN 150698.9 NaN 10464 3161 13624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13628 61.342 NaN 1054300 35 0 174560 0.261 + 33113 YDTQYHAWC 9 82 593.735115792883 1185.455678652566 2 593.7349243164062 MULTI HCD FTMS 0 0 0 13624 169800.65625 0.07319470200431148 -15 0.44469451904296875 4 Unmodified _YDTQYHAWC_ REV__ENSG00000167291|ENST00000310924|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-2|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16 3.944395688203298 0.32111559684428237 2 {[YD]|[{M(Oxidation (M))|F}M]}[K{I|L}]{M(Oxidation (M))|F}D{I|L} 7 -1 19.459 0 0 1.6415 0 0 0 287.9829973383659 287.9829973383659 15.964103878835807 0 0 0 0 0.3807196863200844 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}[K{I|L}]{M(Oxidation (M))|F}D{I|L} 1.6415 - 103 NaN NaN 247664 NaN 10465 3161 13624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13629 61.345 NaN 588370 35 0 70062 0.261 -1 DYSELDPEM 9 100 557.7171843818343 NaN 0 557.71728515625 PEAK HCD FTMS 0 0 0 13624 93101.484375 0.5175762384315077 -2 0.05565643310546875 5 Oxidation (M) _DYSELDPEM(Oxidation (M))_ ENSG00000011243|ENST00000397410|AKAP8L;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L 16.942295170755138 0.2079222001251384 2 PY 2 -1 9.464 0 0 0.84999 0 0 345.9972216915997 504.2827547662719 850.2799764578716 0 0 0 0 0 0 0 0 0 PY 0.84999 - 93 + NaN NaN 190182 NaN 10466 3161 13624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13630 61.348 NaN 213390 35 0 46300 0.263 + 4604 EYLSRHWLF 9 57 417.54867420919254 1249.6241932277776 3 417.5487060546875 MULTI HCD FTMS 0 0 0 13624 40254.2109375 0.07251160627254352 25 -0.38713836669921875 6 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 2.498486711656943 0.33207666356665205 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3596 0 0 1084.5450744307057 0 1084.5450744307057 0 13.010299956639813 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3596 + + 2 + NaN NaN 117180.9 NaN 10467 3161 13624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13632 61.353 NaN 6407500 35 0 748650 0.327 + 33091 YDSCCVIDKIT 11 119 439.5337764924605 1315.5795000775815 3 439.5339660644531 MULTI HCD FTMS 0 0 0 13631 2625709.75 1 0 0 1 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 43.476825903602695 0.1145582081028919 2 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 7 87.202 0 0 6.6284 0 0 0 128.07183252506096 128.07183252506096 61.025684359364405 0 0 0 0 2.110924374808178 2 2.1989700043360187 0 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 6.6284 - 3035 + NaN NaN 751432.4 NaN 10468 3162 13631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13633 61.358 NaN 1277900 35 0 137540 0.261 + 26728 SYDPLYYIN 9 96 574.2686772964646 1146.522801659729 2 574.2687377929688 MULTI HCD FTMS 0 0 0 13631 633378.5625 0.15829499535708114 -14 0.4116668701171875 2 Unmodified _SYDPLYYIN_ REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1 34.10243960390752 0.09241788333544565 2 SPY{M(Oxidation (M))|F}KT{I|L} 7 -1 66.59 0 0 5.808 0 0 292.0694035472793 0 292.0694035472793 0 13.842663351106381 0 0 0 2.385151878060192 0 1.7544321917401078 0 SPY{M(Oxidation (M))|F}KT{I|L} 5.808 - 636 NaN NaN 283838.3 NaN 10469 3162 13631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13634 61.361 NaN 1321200 35 0 103890 0.261 + 20277 NYLVLPNRI 9 114 551.3247909043132 1100.6350288754263 2 551.3250122070312 MULTI HCD FTMS 0 0 0 13631 371870.40625 0.8269856535675386 -1 0.0227508544921875 3 Unmodified _NYLVLPNRI_ ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2 65.23502041540118 0.010630085227462206 2 [YN]{I|L}V{I|L} 5 4 64.495 0 0 5.8598 0 0 0 495.26957019901437 495.26957019901437 51.13499363968131 0 0 0 0 2 1.6989700043360187 0 0.9802046884880937 + [YN]{I|L}V{I|L} 5.8598 + + 2493 NaN NaN 298438.5 NaN 10470 3162 13631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13635 61.365 NaN 319350 35 0 32481 0.261 + 17374 LYQHEINLF 9 75 588.8060870032504 1175.5976210733006 2 588.8070068359375 MULTI HCD FTMS 0 0 0 13631 38222.4609375 0.10278525622683302 9 -0.10765838623046875 4 Unmodified _LYQHEINLF_ ENSG00000115816|ENST00000234170|CEBPZ 24.020572477871973 0.15282392193088168 2 N{I|L}{M(Oxidation (M))|F} 3 6 38.5 0 0 3.2749 0 0 783.3936085821595 0 783.3936085821595 0 18.578409410397466 0 0 0 0.8494850021680094 0 0 0.3807196863200844 + N{I|L}{M(Oxidation (M))|F} 3.2749 + + 226 NaN NaN 131971.2 NaN 10471 3162 13631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13636 61.368 NaN 340460 35 0 53463 0.261 + 10490 IPDSVSIQY 9 73 511.262867304065 NaN 0 511.26263427734375 PEAK HCD FTMS 0 0 0 13631 69509.34375 0.4227544757674889 -1 0.0227508544921875 5 Unmodified _IPDSVSIQY_ ENSG00000183808|ENST00000520560|RBM12B 20.453626601364224 0.18435338882370536 2 PVEH 4 7 21.587 0 0 2.1153 0 0 113.08574993812245 442.17792688541255 555.263676823535 0 0 0 0 0 0.4247425010840047 0 0.3807196863200844 0 PVEH 2.1153 - 64 + NaN NaN 134986.9 NaN 10472 3162 13631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13638 61.373 NaN 2634700 35 0 280330 0.327 + 27102 SYMGHFDLL 9 119 549.7498597197784 1097.4851665063568 2 549.7503051757812 MULTI HCD FTMS 0 0 0 13637 2264918.5 0.2690033027430535 20 -0.27381134033203125 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 123.45060196383646 0.0010021686353097689 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 86.252 0 0 7.8591 7.8591 94.547 0 0 0 40.55584714187489 9.889917747712644 9.889917747712644 18.777587793350534 0 2.4361818737241734 2 1.329689690656103 0 + + SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHVE{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}D{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[DP]{M(Oxidation (M))|F}[MT] 7.8591;6.1481;5.0697;4.0678;3.7429;3.374;3.2839;3.0363;2.7296;2.7283 +;-;+;-;-;-;-;-;-;- + 4019 + NaN NaN 506077.5 NaN 10473 3163 13637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13639 61.377 NaN 1155100 35 0 231980 0.261 + 16039 LPSEDPYQL 9 68 531.2614286415064 1060.5083043498128 2 531.2613525390625 MULTI HCD FTMS 0 0 0 13637 822715.3125 0.6857711797043182 -2 0.04212188720703125 2 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 56.17704186161178 0.022929533404884107 2 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L} 9 2 + 59.05 0 0 5.5681 5.5681 86.746 0 0 0 5.347040357455839 43.159591298198364 5.347040357455839 8.57840941039747 0 1.555462187404089 0 0.28872548999643577 0.3494850021680094 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L};[VP]{[ET]|[MV]}DPYQ{I|L};{[QN]|[E{I|L}]|[KN]}[PS]DPY[AG]{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}DPYQ{I|L};[VP]{[ET]|[MV]}DPY[AG]{I|L};[{I|L}P]{[ES]|[DT]|[{I|L}C]}DPY[AG]{I|L};{[QN]|[E{I|L}]|[KN]}YPD[PS]Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}YM[{M(Oxidation (M))|F}T]Q{I|L};[VP][EP]{[ES]|[DT]|[{I|L}C]}YQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{[ES]|[DT]|[{I|L}C]}YQ{I|L} 5.5681;4.7592;4.6998;4.2661;3.5613;3.0683;2.9015;2.3624;2.3585;2.0557 -;-;-;+;-;-;-;-;-;- + 646 NaN NaN 263077 NaN 10474 3163 13637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13640 61.381 NaN 1211300 35 0 61328 0.261 -1 MDISEGNKTL 10 115 583.2740892778603 1164.5336256225205 2 583.2742309570312 MULTI HCD FTMS 0 0 0 13637 603403.75 0.2248635115103484 -13 0.3786811828613281 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))DISEGNKTL_ ENSG00000196578|ENST00000358642|OR5AC2 31.26834338654808 0.2211790902911672 2 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 77.83 0 0 6.6834 6.6834 92.496 0 0 0 10.03354731678023 54.14062461039728 10.03354731678023 19.247425010840054 0 2.6989700043360187 2 0.8778623208748889 0 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L};[{I|L}T]K{M(Oxidation (M))|F}[YE]SYD;[{I|L}T]K{M(Oxidation (M))|F}[YE]YSD 6.6834;5.0305;0.75905;0.75673 -;-;-;- 1636 NaN NaN 274522.5 NaN 10475 3163 13637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13641 61.384 NaN 138680 35 0 12508 0.263 -1 NVHMKQEHYM 10 54 450.19700222235684 1347.5691772672706 3 450.19677734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _NVHM(Oxidation (M))KQEHYM(Oxidation (M))_ ENSG00000164307|ENST00000443439|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF;ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant;nc|ENSG00000164307|Q9NZ08-2|ERAP1 0.776531954647913 0.4711933975711956 2 [Y{M(Oxidation (M))|F}][PS]SV 6 -1 13.161 0 0 0.97662 0 0 0 664.2775362604124 664.2775362604124 9.181212380090217 0 0 0 0 0.3494850021680094 0 0 0 [Y{M(Oxidation (M))|F}][PS]SV 0.97662 - 9 + NaN NaN 107105.4 NaN 10476 3163 13637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13643 61.389 NaN 766060 35 0 123520 0.327 + 10658 IPVESEVNL 9 83 500.271541979234 998.528531025268 2 500.27166748046875 MULTI HCD FTMS 0 0 0 13642 821687.0625 1 0 0 1 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 114.6490535036381 0.0021834323520089267 2 ESEVN{I|L} 6 3 72.855 0 0 7.2962 0 0 309.2047291486344 0 309.2047291486344 0 56.600103527040844 0 0 0 1.8737125054200234 0 1.4559771852360797 0.3807196863200844 + ESEVN{I|L} 7.2962 + + 394 NaN NaN 209263.6 NaN 10477 3164 13642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13644 61.393 NaN 1279500 35 0 228950 0.261 + 2771 DYCLENKTL 9 103 578.270665882522 1154.526778831844 2 578.7728271484375 MULTI HCD FTMS 0 0 0 13642 137513.296875 0.14720392442505198 -3 0.058109283447265625 2 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 63.960520009940105 0.0120409805053046 2 DYSPY{M(Oxidation (M))|F} 6 7 69.334 0 0 6.0054 0 0 0 379.1960848443969 379.1960848443969 22.11467086037498 0 0 0 0 1.336696871556164 2 0.7742275032520141 0 DYSPY{M(Oxidation (M))|F} 6.0054 - 250 + NaN NaN 290765.6 NaN 10478 3164 13642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13645 61.397 NaN 937590 35 0 164950 0.261 + 14292 LDEDEPEEPV 10 87 586.2527896103529 1170.4910262875057 2 586.2535400390625 MULTI HCD FTMS 0 0 0 13642 203659.203125 0.23441043913786838 -10 0.2798423767089844 3 Unmodified _LDEDEPEEPV_ REV__ENSG00000159256|ENST00000400485|MORC3;REV__MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant 20.453626601364224 0.3197956946484955 2 DYSTS 5 -1 45.674 0 0 3.9021 0 0 0 614.2454993766609 614.2454993766609 21.747425010840047 0 0 0 0 0 2 0.4247425010840047 0 DYSTS 3.9021 - 130 + NaN NaN 229163.4 NaN 10479 3164 13642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13646 61.4 NaN 122530 35 0 3815.1 0.261 + 14938 LLFFFLKILL 10 41 633.915283203125 NaN 0 633.915283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LLFFFLKILL_ REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF 0.4007161486938917 0.3398413315442166 2 {I|L} 1 -1 3.9794 0 0 0.31437 0 0 659.5210164044937 490.19880090885005 1149.7198173133438 0 0 0 0 0 0 0 0 0 {I|L} 0.31437 + + 3 + NaN NaN 110670 NaN 10480 3164 13642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13648 61.405 NaN 107900000 35 0 14060000 0.327 + 2912 DYSPYFKTI 9 115 567.2793230526404 1132.5440931720807 2 567.2799072265625 MULTI HCD FTMS 0 0 0 13647 112660904 0.7191218230849402 -2 0.0319366455078125 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 2 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.34 0 0 10.273 10.273 89.936 0 0 0 0.4833247972062793 0.4833247972062793 0.4833247972062793 0.4833247972062793 0 3.048455006504028 2 2.3798545532927076 0 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PSY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};SYDPY{M(Oxidation (M))|F}KT{I|L} 10.273;10.23;9.2341;8.5696;8.3678;8.3422;7.5735;7.3461;6.9513;6.9015 +;+;-;-;-;-;-;-;-;- + 4179 + NaN NaN 1046450.4 NaN 10481 3165 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13649 61.409 NaN 6306300 35 0 1178300 0.223 + 13070 KYLDVKFEYL 10 113 439.90776639657025 1316.7014697899108 3 439.9078369140625 MULTI HCD FTMS 0 0 0 13647 2201615.25 0.9629522267951979 -1 0.015949249267578125 2 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 44.94466952835103 0.1024974934706924 2 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 9 7 56.212 0 0 4.2691 0 0 116.14935092920435 0 116.14935092920435 0 9.321107801449656 0 0 0 0.5 0 2.0743923658886185 0 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 4.2691 - 4074 + NaN NaN 792664.7 NaN 10482 3165 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13650 61.412 NaN 1050500 35 0 110080 0.261 -1 DYCLENKTL 9 104 578.270665882522 1154.526778831844 2 578.2700805664062 MULTI HCD FTMS 0 0 0 13647 703437.3125 0.6882240762798296 -2 0.0319366455078125 3 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 55.50274090549119 0.023872834264864425 2 DYS{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K 7 -1 67.497 0 0 5.8463 0 0 0 251.10115991763908 251.10115991763908 23.60563276647278 0 0 0 0 1.1307196863200843 2 0.4247425010840047 0.535666875892183 DYS{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K 5.8463 - 493 + NaN NaN 246559.1 NaN 10483 3165 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13651 61.415 NaN 742850 35 0 77911 0.261 + -1 VLWTLCFYLFF 11 87 503.59319789208644 NaN 0 503.5928649902344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _VLWTLC(Carbamidomethyl (C))FYLFF_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|75 14.957161354070239 0.29567619482448193 2 EVC(Carbamidomethyl (C)) 3 -1 6.1979 0 0 0.6166 0 0 130.80166638352347 483.2076815240844 614.0093479076079 0 0 0 0 0 0 0 0 0 EVC(Carbamidomethyl (C)) 0.6166 - 71 + NaN NaN 198645.1 NaN 10484 3165 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13652 61.418 NaN 430830 35 0 54886 0.262 -1 0 64 413.26623753179246 412.25896106519247 1 413.573974609375 MULTI HCD FTMS 0 0 0 13647 224389.921875 0.7502204278960214 -7 0.16924285888671875 5 NaN NaN 2 D 1 -1 3.9794 0 0 0.96527 0 0 162.1639273511284 132.0454500787719 294.2093774299003 0 0 0 0 0 0 0 0 0 D 0.96527 - 6 + NaN NaN 155492.3 NaN 10485 3165 13647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13654 61.423 NaN 1165000 35 0 209490 0.411 + 27373 SYSMIVNNL 9 134 528.7551913513045 1055.4958297694088 2 528.755126953125 MULTI HCD FTMS 0 0 0 13653 826940.75 0.9250631202254318 -10 0.24361801147460938 1 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 142.0795815696625 1.719916958814042E-05 2 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 75.059 0 0 7.1113 7.1113 87.493 0 0 0 3.84720730648759 10.131244091085676 3.84720730648759 3.84720730648759 0 2.473197507588033 0 0.805462187404089 0.6109243748081782 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};[YV][{M(Oxidation (M))|F}T]SVNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};[YV][{M(Oxidation (M))|F}T]SVNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SVNN{I|L};[YV][{M(Oxidation (M))|F}T]SVGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SVNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};{[TV]|[{I|L}S]}[Y{M(Oxidation (M))|F}]SVNN{I|L} 7.1113;6.7468;6.2389;5.9912;5.8744;5.7584;5.6267;4.886;4.7918;4.7819 +;-;-;-;-;-;-;-;-;- + 2649 NaN NaN 447778.3 NaN 10486 3166 13653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13656 61.43 NaN 1393700 35 0 160960 0.327 + 13328 KYMDVQFDF 9 80 604.7681496085214 1207.5217462838427 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13655 1335418.5 0.29998594888336305 26 -0.39414215087890625 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 93.93812099017352 0.0044227730261779084 2 [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 79.606 0 0 6.5925 6.5925 87.132 0 0 0 3.2568864632742844 46.585390679490075 3.2568864632742844 5.255762612236907 0 2.274227503252014 0 0.75 0.7302046884880937 + + [YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QYV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}AYDV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 6.5925;6.1572;5.8715;5.8299;5.3947;5.2046;5.1089;5.0853;4.6801;4.6599 +;-;-;-;-;-;-;-;-;- + 1998 NaN NaN 312767.2 NaN 10487 3167 13655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13657 61.435 NaN 463020 35 0 93402 0.261 + 14040 KYVENFGLI 9 82 541.7977122333596 1081.580871533519 2 541.797607421875 MULTI HCD FTMS 0 0 0 13655 153665.0625 0.12680410201799075 -10 0.218170166015625 2 Unmodified _KYVENFGLI_ ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF 57.24910588100465 0.021429789259086996 2 [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L} 9 0 + 76.679 0 0 7.0895 7.0895 90.426 0 0 0 3.2568864632742844 63.18426893869692 3.2568864632742844 9.208187539523749 0 2.4802046884880937 0 0 0.805462187404089 + + [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L};[YK]VEGG{M(Oxidation (M))|F}G{I|L}{I|L};[YK][SG][TP]{M(Oxidation (M))|F}G{I|L}{I|L} 7.0895;6.2382;3.6023 +;-;- + 316 NaN NaN 164280 NaN 10488 3167 13655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13659 61.44 NaN 398130 35 0 65660 0.411 + 19251 NLDRPRDI 8 100 499.7734375 NaN 0 499.7734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NLDRPRDI_ ENSG00000134569|ENST00000378623|LRP4 14.581692164780916 0.38795613832665576 2 NVESE 5 7 31.216 0 0 3.1294 0 0 130.09860556464997 306.1824129693969 436.2810185340469 0 0 0 0 0 0 0 1.024227503252014 0.3807196863200844 NVESE 3.1294 - 112 + NaN NaN 212216.2 NaN 10489 3168 13658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13661 61.447 NaN 455130 35 0 27098 0.411 + 33045 YDADAEETGLD 11 115 599.7412950535166 NaN 0 599.7896118164062 PEAK HCD FTMS 0 0 0 13660 57948.625 0.2424621369470254 1 -0.00724029541015625 1 Unmodified _YDADAEETGLD_ ENSG00000186638|ENST00000402558|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24 8.745405648335112 0.31731194618894887 2 V{[SA]|[TG]}Y{M(Oxidation (M))|F}TM 7 9 24.722 0 0 2.0645 0 0 165.94892496363724 229.11959253482658 395.06851749846385 0 0 0 0 0 0.4247425010840047 0 0.5649093276264391 0 V{[SA]|[TG]}Y{M(Oxidation (M))|F}TM 2.0645 - 461 + NaN NaN 236864.3 NaN 10490 3169 13660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13664 61.46 NaN 2864700 35 0 453850 0.327 + 33114 YDTQYHAWC 9 114 593.735115792883 1185.455678652566 2 593.735107421875 MULTI HCD FTMS 0 0 0 13663 2056461 0.8864632999820247 -5 0.0377197265625 1 Unmodified _YDTQYHAWC_ REV__ENSG00000167291|ENST00000310924|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-2|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16 11.640296217721598 0.25978676193971967 2 [YN]{I|L} 3 -1 29.934 0 0 2.5251 0 0 0 792.2426714106315 792.2426714106315 17.256499699645858 0 0 0 0 0 2 0 0.5752574989159953 [YN]{I|L} 2.5251 - 217 NaN NaN 518033.8 NaN 10491 3171 13663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13665 61.465 NaN 1381400 35 0 243490 0.263 + 24357 RYIDRIHIFF 10 71 460.5908872349479 1378.7508323050438 3 460.5906677246094 MULTI HCD FTMS 0 0 0 13663 621020.75 0.06545423510586473 35 -0.6604537963867188 2 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 17.86316937532769 0.34402595751606074 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 40.005 0 0 2.9015 0 0 953.5182716912832 0 953.5182716912832 0 33.01538440272459 0 0 0 1.3807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9015 + + 49 NaN NaN 292970.2 NaN 10492 3171 13663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13667 61.47 NaN 217060 35 0 15532 0.411 + 5498 FKKYKDKTKKF 11 84 487.6257629394531 NaN 0 487.6257629394531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FKKYKDKTKKF_ tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1 0.4545168274142398 0.3408308101233591 2 CCN 3 11 11.053 0 0 1.1357 0 0 127.88983134590008 522.2790011041624 650.1688324500625 0 0 0 0 0 0 0 0 0.6861818737241735 CCN 1.1357 - 28 + NaN NaN 149170.5 NaN 10493 3172 13666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13669 61.477 NaN 3003500 35 0 335030 0.326 -1 LGLGQESPEAM 11 113 574.2686772964646 1146.522801659729 2 574.2686767578125 MULTI HCD FTMS 0 0 0 13668 1932106.5 0.48287518327064677 -3 0.02275848388671875 1 Oxidation (M) _LGLGQESPEAM(Oxidation (M))_ ENST00000461802.1_1_16:452035-456544:+|nuORF 29.84058131909904 0.20237991466741817 2 DSPY{M(Oxidation (M))|F}KT{I|L} 8 -1 68.242 0 0 5.9521 0 0 177.04280287910314 0 177.04280287910314 0 14.38547520912806 0 0 0 2.353917193908117 0 1.8098943791441968 0 DSPY{M(Oxidation (M))|F}KT{I|L} 5.9521 - 1650 NaN NaN 570066.4 NaN 10494 3173 13668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13670 61.481 NaN 501100 35 0 66119 0.261 + 5750 FPAGYMYPSM 10 70 598.2436161963661 1194.4726794595322 2 598.2433471679688 MULTI HCD FTMS 0 0 0 13668 102781.96875 0.28615931297187897 -1 0.007232666015625 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 {[YD]|[{M(Oxidation (M))|F}M]}AY{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F} 10 4 + 63.197 0 0 5.2908 5.2908 84.601 0 0 0 6.615915254821331 7.87472692314855 6.615915254821331 4.437179091548892 0 1.2134679910804405 1.5228787452803376 0.6861818737241735 0 {[YD]|[{M(Oxidation (M))|F}M]}AY{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[WY][VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[HD]P[VS]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPS{M(Oxidation (M))|F};[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5.2908;4.9193;4.7369;4.3375;3.6329;3.6329;3.5084;3.4476;3.2763;3.1708 -;-;-;-;-;-;-;-;-;- 282 NaN NaN 165884.5 NaN 10495 3173 13668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13672 61.486 NaN 2902500 35 0 584630 0.385 + 33092 YDSCCVIDKIT 11 131 439.5337764924605 1315.5795000775815 3 439.533935546875 MULTI HCD FTMS 0 0 0 13671 750612.5 0.2858703251568457 12 -0.23159408569335938 1 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 53.7980654928069 0.06582189813508678 2 {[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD 11 7 + 65.857 0 0 5.0059 5.0059 84.015 0 0 0 0.4677547115301479 42.126111824786186 0.4677547115301479 3.979400086720368 0 1 2 1.4489700043360187 0 {[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}SP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PS{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]T{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]T{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]ST{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}SP[KQ]TS{I|L}YD;{[YD]|[{M(Oxidation (M))|F}M]}PS{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PSYD;{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]TP{I|L}SYD;{[YD]|[{M(Oxidation (M))|F}M]}S[KQ]TPS{I|L}YD 5.0059;4.7034;4.4746;4.3806;4.3408;4.1467;4.112;4.0926;4.0781;3.8493 -;-;-;-;-;-;-;-;-;- 3516 NaN NaN 879531.5 NaN 10496 3174 13671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13674 61.493 NaN 1111700 35 0 131230 0.411 + 31511 VYGFLRNGF 9 99 536.7823465104161 1071.5501400876321 2 536.7820434570312 MULTI HCD FTMS 0 0 0 13673 268736.65625 0.30080793327273037 -3 0.0231475830078125 1 Unmodified _VYGFLRNGF_ ENST00000343327.6_1_9:115030452-115095785:-|nuORF 125.62461146993168 0.0008703235425492373 2 VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F} 9 0 + 99.798 0 0 9.3134 9.3134 93.667 0 0 0 72.87437263284417 14.973024840566467 14.973024840566467 9.208187539523749 0 2.723197507588033 1.6989700043360187 0 0.805462187404089 + + VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VY{I|L}{[CT]|[{M(Oxidation (M))|F}G]}RNG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VY{I|L}{[CT]|[{M(Oxidation (M))|F}G]}RGGG{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VY{[ET]|[MV]}{I|L}V{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}G[RN]{M(Oxidation (M))|F};VY{I|L}{[ET]|[MV]}V{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KG][VS]{M(Oxidation (M))|F}GP{M(Oxidation (M))|F} 9.3134;8.4541;7.354;7.1232;6.4947;6.2639;5.8476;5.4697;5.328;4.6255 +;-;-;+;-;-;-;-;-;- + 2010 + NaN NaN 423610.9 NaN 10497 3175 13673 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13676 61.5 NaN 2776700 35 0 139230 0.327 -1 DNADEMIKTL 10 121 583.2740892778603 1164.5336256225205 2 583.273681640625 MULTI HCD FTMS 0 0 0 13675 2683422.25 1 0 0 1 Oxidation (M) _DNADEM(Oxidation (M))IKTL_ tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 38.61474834105838 0.1574278268413918 2 DYSEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 100.19 0 0 8.6037 8.6037 94.793 0 0 0 13.579882874873249 13.579882874873249 13.579882874873249 13.579882874873249 0 2.504432191740108 2 1.7346368802282015 0 DYSEY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};DYS{M(Oxidation (M))|F}[YE]KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L};DYYA[YE]KT{I|L};D[QA]{NN|[MP]|[D{I|L}]|[EV]}MMKT{I|L};D{[C(Carbamidomethyl (C))G]|[NC]}[{I|L}P]MMKT{I|L};DYYTK{[{M(Oxidation (M))|F}D]|MM}T{I|L} 8.6037;7.4375;6.3397;5.8116;1.6178;1.2655;1.1113;0.23597 -;-;-;-;-;-;-;- 4862 + NaN NaN 520945 NaN 10498 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13677 61.504 NaN 2308800 35 0 175150 0.261 + 27103 SYMGHFDLL 9 120 549.7498597197784 1097.4851665063568 2 549.750732421875 MULTI HCD FTMS 0 0 0 13675 1801692.625 0.21398618389703727 33 -0.702972412109375 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 42.616 0 0 3.8831 3.8831 87.361 0 0 0 4.607952948012652 13.449302836445014 4.607952948012652 13.521825181113613 0 1.7231975075880328 0 0.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GHV{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}GH{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))G]|[NC]}{I|L}EAW{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))G]|[NC]}{I|L}EWA{I|L};N[RH]VHG{M(Oxidation (M))|F}[MT];{[{M(Oxidation (M))|F}C]|[YS]}[DG][H{I|L}]MY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F}HGE{[{M(Oxidation (M))|F}C]|[YS]} 3.8831;2.651;2.5951;1.5794;1.5377;0.8933;0.805;0.77226;0.76171;0.68981 +;-;-;-;-;-;-;-;-;- + 3232 NaN NaN 446614.7 NaN 10499 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13678 61.508 NaN 679050 35 0 129560 0.261 + 16040 LPSEDPYQL 9 55 531.2614286415064 1060.5083043498128 2 531.2615966796875 MULTI HCD FTMS 0 0 0 13675 398905.53125 0.33250616902294533 11 -0.23342132568359375 3 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 21.536976647645854 0.1742816388551942 2 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L} 9 2 + 49.587 0 0 4.6758 4.6758 86.451 0 0 0 7.336740400816026 34.98319373273603 7.336740400816026 9.208187539523749 0 1.110924374808178 0 0.2614393726401688 0 {[QN]|[E{I|L}]|[KN]}[PS]DPYQ{I|L};{[QN]|[E{I|L}]|[KN]}[PS]DPY[AG]{I|L};[VP]{[ET]|[MV]}DPYQ{I|L};[VP]{[ET]|[MV]}DPY[AG]{I|L} 4.6758;3.8075;3.6204;2.7521 -;-;-;- 113 NaN NaN 216840.7 NaN 10500 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13679 61.511 NaN 378330 35 0 28311 0.261 + 16979 LYIGHLTTL 9 84 515.8001339163935 1029.585714899587 2 515.7998657226562 MULTI HCD FTMS 0 0 0 13675 288833.125 0.6610929112540063 -9 0.06968307495117188 4 Unmodified _LYIGHLTTL_ ENSG00000082805|ENST00000360905|ERC1;ENST00000542302.6_1_12:1519571-1599393:+|nuORF;nc|ENSG00000082805|Q8IUD2-3|ERC1 77.98433622928108 0.006504613272346738 2 {I|L}Y{I|L}{NN|[MP]|[D{I|L}]|[EV]}VV[VP] 9 6 + 46.347 0 0 4.5015 4.5015 84.547 0 0 0 18.361884269476853 0.14908724233677617 0.14908724233677617 7.13341054555039 0 0.6989700043360187 2 1.0994850021680094 0 {I|L}Y{I|L}{NN|[MP]|[D{I|L}]|[EV]}VV[VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVK[Q{I|L}]{I|L};{I|L}Y{I|L}QQ{[VA]|[{I|L}G]}[VP];[{I|L}T]{[{M(Oxidation (M))|F}H]|[RQ]}S{I|L}VT{I|L};{I|L}YQQ{I|L}{[VA]|[{I|L}G]}[VP];[{I|L}T]{[{M(Oxidation (M))|F}H]|[RQ]}SV{I|L}T{I|L};[{I|L}T]{[{M(Oxidation (M))|F}H]|[RQ]}VVTT{I|L};[{I|L}T]VV{[{M(Oxidation (M))|F}H]|[RQ]}TT{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VAVK[KP]E;[{I|L}T]{[VA]|[{I|L}G]}[WQ]VT{I|L} 4.5015;3.8087;3.1412;2.3235;2.1191;2.0312;1.7369;1.4445;1.08;1.0308 -;-;-;-;-;-;-;-;-;- 365 + NaN NaN 162295.8 NaN 10501 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13680 61.515 NaN 276380 35 0 54218 0.261 -1 CECSSCCWQ 9 59 610.1841430664062 NaN 0 610.1841430664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))EC(Carbamidomethyl (C))SSC(Carbamidomethyl (C))CWQ_ ENST00000498611.5_1_22:50657800-50659866:-|nuORF 0.5247636613948944 0.2927039108006614 2 AP 2 -1 7.9588 0 0 0.65324 0 0 76.92652061283691 970.3088472955686 1047.2353679084056 0 0 0 0 0 0 0 0 0 AP 0.65324 - 7 + NaN NaN 131360.1 NaN 10502 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13681 61.518 NaN 179590 35 0 8129.3 0.261 + 18164 MPDGQFKDISL 11 56 625.8075561523438 NaN 0 625.8075561523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MPDGQFKDISL_ ENSG00000117450|ENST00000319248|PRDX1 10.315234532428624 0.31285879373174325 2 K 1 10 6.4794 0 0 0.51852 0 0 528.1997814435562 590.2799166315061 1118.4796980750623 0 0 0 0 0 0.25 0 0 0 + K 0.51852 + + 8 + NaN NaN 120312.1 NaN 10503 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13682 61.521 NaN 276780 35 0 20036 0.261 -1 LRSDPDDARAM 11 68 631.7937182060457 1261.5728834788913 2 631.7918090820312 MULTI HCD FTMS 0 0 0 13675 113922.3984375 0.2595036409713329 -8 0.060596466064453125 7 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 11.494710602746466 0.35692862141139436 2 [R{I|L}][EP][WE]SQ 8 -1 42.152 0 0 3.3412 0 0 0 233.05721498753442 233.05721498753442 15.879231027444405 0 0 0 0 1.5669015600442577 1.3010299956639813 0.3807196863200844 0 [R{I|L}][EP][WE]SQ 3.3412 - 88 NaN NaN 148536.4 NaN 10504 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13683 61.524 NaN 276350 35 0 30861 0.263 + -1 MFQPYLSF 8 72 524.7433471679688 NaN 0 524.7433471679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _M(Oxidation (M))FQPYLSF_ REV__ENSG00000100934|ENST00000307712|SEC23A;REV__ENSG00000101310|ENST00000650089|SEC23B;REV__nc|ENSG00000100934|Q15436-2|SEC23A 15.768221252438446 0.38723490340397554 2 CV 2 -1 20.969 0 0 2.0019 0 0 131.09866753785815 711.2736910455686 842.3723585834268 0 0 0 0 0 1 0 0 0 CV 2.0019 - 55 + NaN NaN 144907.6 NaN 10505 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13684 61.528 NaN 298120 35 0 30389 0.261 + 3810 EPEPGEPLL 9 68 490.75059675602233 979.4866405788447 2 490.7516784667969 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 16.942295170755138 0.21397866736869717 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TN 4 8 15.718 0 0 1.6048 0 0 0 504.21211220939057 504.21211220939057 1.1143281941665606 0 0 0 0 0 0 0.7302046884880937 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TN 1.6048 - 58 NaN NaN 132246.4 NaN 10506 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13685 61.531 NaN 200170 35 0 38078 0.261 + 4606 EYLSRHWLF 9 54 417.5484924316406 NaN 0 417.5484924316406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _EYLSRHWLF_ ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 4.897010918128616 0.2715166107592903 2 Y 1 8 3.4949 0 0 0.41951 0 0 274.8211688459 392.17893396549067 667.0001028113907 0 0 0 0 0 0 0 0 0 + Y 0.41951 + + 6 + NaN NaN 113180.4 NaN 10507 3176 13675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13687 61.536 NaN 208490 35 0 7805.8 0.411 -1 IRGTRMYQPL 10 72 625.8349609375 NaN 0 625.8349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _IRGTRM(Oxidation (M))YQPL_ ENSG00000130943|ENST00000253255|PKDREJ 8.155526934196011 0.33320428830121973 2 {I|L}D 2 -1 10.969 0 0 0.87777 0 0 218.18107863270012 800.3444918268186 1018.5255704595188 0 0 0 0 0 0 0 0 0 {I|L}D 0.87777 - 23 + NaN NaN 152150.2 NaN 10508 3177 13686 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13689 61.543 NaN 110530000 35 0 14849000 0.327 + 2913 DYSPYFKTI 9 104 567.2793230526404 1132.5440931720807 2 567.280029296875 MULTI HCD FTMS 0 0 0 13688 110936688 0.7081160410497435 11 -0.21908950805664062 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 2 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.95 0 0 10.327 10.327 90.081 0 0 0 0.7255998297264199 0.7255998297264199 0.7255998297264199 0.7255998297264199 0 3.048455006504028 2 2.440614065464281 0 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}[{I|L}T]K;{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}[{I|L}T]K;{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}[{I|L}T]K;{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}KYDT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[VG]Y{M(Oxidation (M))|F}[VG]T{I|L} 10.327;10.262;8.3208;7.5069;7.1608;5.5653;4.4052;3.9774;3.6663;3.656 +;+;-;-;-;-;-;-;-;- + 3544 + NaN NaN 737321.9 NaN 10509 3178 13688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13690 61.548 NaN 2235600 35 0 409090 0.263 + 13071 KYLDVKFEYL 10 79 439.90776639657025 1316.7014697899108 3 440.24212646484375 MULTI HCD FTMS 0 0 0 13688 882124 0.39144762788681164 12 -0.2265777587890625 2 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 22.10888232116614 0.3043129911316316 2 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 9 7 47.017 0 0 3.5708 0 0 116.14838303657605 0 116.14838303657605 0 7.2936437512489505 0 0 0 0.5 0 1.1549471895720984 0 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 3.5708 - 449 + NaN NaN 434017.5 NaN 10510 3178 13688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13691 61.551 NaN 901320 35 0 163070 0.261 -1 0 86 586.2527896103529 1170.4910262875057 2 586.2535400390625 MULTI HCD FTMS 0 0 0 13688 640339.8125 0.7370270252577632 4 -0.07382583618164062 3 NaN NaN 2 DYS 3 -1 48.684 0 0 4.1593 0 0 0 802.3472438686993 802.3472438686993 26.020599913279625 0 0 0 0 0.3807196863200844 2 0.805462187404089 0 DYS 4.1593 - 129 + NaN NaN 235008.6 NaN 10511 3178 13688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13693 61.556 NaN 1128500 35 0 280020 0.327 + 14041 KYVENFGLI 9 88 541.7977122333596 1081.580871533519 2 541.7976684570312 MULTI HCD FTMS 0 0 0 13692 1113636.75 0.9189708171822315 2 -0.038677215576171875 1 Unmodified _KYVENFGLI_ ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF 83.42873516780209 0.004742894019233849 2 [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L} 9 0 + 94.79 0 0 8.764 8.764 93.085 0 0 0 4.762036441594191 57.716276944278825 4.762036441594191 9.208187539523749 0 2.75 0 0.28872548999643577 1.1549471895720984 + + [YK]VEN{M(Oxidation (M))|F}G{I|L}{I|L};[YK]VEGG{M(Oxidation (M))|F}G{I|L}{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NE[YV]K{I|L};[YK]VE[PG][YV]K;{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NE[YV]{I|L}K;{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGE[YV]K{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}NE{I|L}[YV]K;{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGE[YV]{I|L}K;{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GGE{I|L}[YV]K 8.764;7.9127;2.4625;2.4233;1.8545;1.288;1.2531;0.37933;0.101 +;-;-;-;-;-;-;-;- + 995 NaN NaN 263394.1 NaN 10512 3179 13692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13694 61.56 NaN 1165900 35 0 128600 0.261 + 13329 KYMDVQFDF 9 80 604.7681496085214 1207.5217462838427 2 604.768798828125 MULTI HCD FTMS 0 0 0 13692 590858.6875 0.13272940581972317 38 -0.863616943359375 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 100.0907132914201 0.004261551473353346 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 82.744 0 0 6.8523 6.8523 65.376 0 0 0 0 7.191060040866475 0 0 0 1.9247425010840047 0 1.1549471895720984 1.055462187404089 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VDYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[TA]AQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.8523;6.8523;6.5207;6.4758;6.4172;6.2513;6.0898;6.0898;6.0807;5.9393 -;+;-;-;-;-;-;-;-;- + 2165 NaN NaN 259798.9 NaN 10513 3179 13692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13695 61.564 NaN 606150 35 0 38461 0.261 + 603 APFKFDMEL 9 95 557.2680039090901 1112.5214548849801 2 557.267822265625 MULTI HCD FTMS 0 0 0 13692 411560.4375 0.4953678175255919 -11 0.116058349609375 3 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 86.33184430468982 0.004622086694044132 2 AP{M(Oxidation (M))|F}K{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E{I|L} 9 0 + 65.819 0 0 5.9162 5.9162 89.104 0 0 0 30.742450194410395 13.485673916077666 13.485673916077666 9.247877306703607 0 2.1861818737241734 0 1.763632853717045 0 + + AP{M(Oxidation (M))|F}K{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}V[YQ]{M(Oxidation (M))|F}E{I|L};{I|L}MAKM[C(Carbamidomethyl (C))K][MT];{[YD]|[{M(Oxidation (M))|F}M]}MEK{M(Oxidation (M))|F}PA{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F}PA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}MEK{M(Oxidation (M))|F}P{I|L}A;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}PA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}MEK{M(Oxidation (M))|F}{I|L}PA;{[YD]|[{M(Oxidation (M))|F}M]}MEK{I|L}{M(Oxidation (M))|F}PA;[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PA{I|L} 5.9162;5.085;2.6674;2.5456;1.6498;1.4718;1.2748;1.2534;1.2534;1.2369 +;-;-;-;-;-;-;-;-;- + 1105 + NaN NaN 185281 NaN 10514 3179 13692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13696 61.567 NaN 794210 35 0 69290 0.261 -1 DYCLENKTL 9 90 578.270665882522 1154.526778831844 2 578.2711791992188 MULTI HCD FTMS 0 0 0 13692 432633.96875 0.42327739546833526 12 -0.22989273071289062 4 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 39.94969957227396 0.06557568441294001 2 DYS 3 -1 58.94 0 0 5.1051 0 0 0 786.3810381805565 786.3810381805565 33.349621957594096 0 0 0 0 0.8494850021680094 2 0.4247425010840047 0 DYS 5.1051 - 234 + NaN NaN 219719.5 NaN 10515 3179 13692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13697 61.57 NaN 431670 35 0 46701 0.263 + 24572 RYLNELKWSF 10 72 452.5750045518715 1354.7031842558144 3 452.909423828125 MULTI HCD FTMS 0 0 0 13692 45716.55078125 0.1887419889653519 -4 0.06292343139648438 5 Unmodified _RYLNELKWSF_ ENSG00000163517|ENST00000295757|HDAC11;ENST00000475818.5_1_3:13522761-13543460:+|nuORF 66.54955139489424 0.02167381291790446 2 [YR]{I|L}NE{I|L}WKS{M(Oxidation (M))|F} 10 2 + 75.992 0 0 5.6095 5.6095 87.071 0 0 0 7.269987279362624 67.91956270212445 7.269987279362624 9.164539485499247 0 2.048455006504028 0 0 1.1861818737241734 [YR]{I|L}NE{I|L}WKS{M(Oxidation (M))|F};[YR]{I|L}GGE{I|L}WKS{M(Oxidation (M))|F};[YR]D[Q{I|L}]{I|L}WKS{M(Oxidation (M))|F} 5.6095;4.933;4.3196 -;-;- 234 NaN NaN 167051.8 NaN 10516 3179 13692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13699 61.575 NaN 910760 35 0 159410 0.327 + 27374 SYSMIVNNL 9 84 528.7551913513045 1055.4958297694088 2 528.7550659179688 MULTI HCD FTMS 0 0 0 13698 420373.5625 0.47025385964657146 4 -0.09405136108398438 1 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 118.0683919894846 0.0016252157255221692 2 {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L} 9 0 + 66.251 0 0 6.2767 6.2767 89.014 0 0 0 6.473586766085155 55.55085089063013 6.473586766085155 9.208187539523749 0 2.031234684152075 0 1.0044321917401078 0.3252574989159953 + + {[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VNGG{I|L};{[{M(Oxidation (M))|F}C]|[YS]}S{M(Oxidation (M))|F}{I|L}VGGGG{I|L};[{M(Oxidation (M))|F}V]S{I|L}{[{M(Oxidation (M))|F}C]|[YS]}NN{I|L};[{M(Oxidation (M))|F}V]S{I|L}{[{M(Oxidation (M))|F}C]|[YS]}GGN{I|L};[YV]P[WD][YT]{I|L} 6.2767;5.4043;5.4043;4.2279;2.8074;1.935;1.9282 +;-;-;-;-;-;- + 578 NaN NaN 219440.7 NaN 10517 3180 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13700 61.58 NaN 399360 35 0 20168 0.261 + -1 RLCREVDPDS 10 80 623.7963813452565 1245.5782097573128 2 624.298828125 MULTI HCD FTMS 0 0 0 13698 48096.68359375 0.2692884927395397 -4 0.07477569580078125 2 Carbamidomethyl (C) _RLC(Carbamidomethyl (C))REVDPDS_ REV__ENSG00000148344|ENST00000340607|PTGES 13.042465956692817 0.38911719078024076 2 [R{I|L}][EP][WE]SQAM 10 -1 + 59.102 0 0 4.745 4.745 87.983 0 0 0 19.945801484491156 12.729764523995598 12.729764523995598 11.989700043360187 0 1.6549471895720984 1.3010299956639813 0.28872548999643577 0 [R{I|L}][EP][WE]SQAM;[R{I|L}][EP]T[WD]QAM;[YG]Q{M(Oxidation (M))|F}T[RN]{M(Oxidation (M))|F}[DV] 4.745;3.7824;0.10251 -;-;- 213 NaN NaN 154722.3 NaN 10518 3180 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13701 61.583 NaN 524220 35 0 62876 0.264 + 24573 RYLNELKWSF 10 70 452.5750045518715 1354.7031842558144 3 452.5747985839844 MULTI HCD FTMS 0 0 0 13698 212418.859375 0.8112433903163077 -4 0.07477569580078125 3 Unmodified _RYLNELKWSF_ ENSG00000163517|ENST00000295757|HDAC11;ENST00000475818.5_1_3:13522761-13543460:+|nuORF 62.89396527753397 0.030897030654610403 2 [YR]{I|L}NE{I|L}KWS{M(Oxidation (M))|F} 10 0 + 96.191 0 0 7.1005 7.1005 89.758 0 0 0 7.269987279362624 89.20100967372576 7.269987279362624 9.164539485499262 0 2.274227503252014 0 0.4247425010840047 0.805462187404089 + + [YR]{I|L}NE{I|L}KWS{M(Oxidation (M))|F};[YR]{I|L}GGE{I|L}KWS{M(Oxidation (M))|F};[YR]D[Q{I|L}]{I|L}KWS{M(Oxidation (M))|F};[YR][TA][PS]{I|L}KWS{M(Oxidation (M))|F};[YR]{I|L}N[{I|L}T][VG]WS{M(Oxidation (M))|F};[YR]{I|L}N[{I|L}T]R[VS]S{M(Oxidation (M))|F} 7.1005;6.424;5.5506;4.6025;3.8215;3.8215 +;-;-;-;-;- + 389 NaN NaN 172300.6 NaN 10519 3180 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13702 61.586 NaN 221570 35 0 10630 0.261 -1 QMHQKQMQCV 10 57 638.7846851632095 1275.5548173932189 2 639.7890014648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _QM(Oxidation (M))HQKQMQCV_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1;YLPM1|p.N271Tfs*18|1|0.39|ENSG00000119596|chr14:74764297-74764297|A/-|frameshift_variant;YLPM1|p.S267Rfs*8|1|0.16|ENSG00000119596|chr14:74764289-74764290|GT/-|frameshift_variant 6.2057823575117 0.44245551207394906 2 [R{I|L}][EP][WE]SE{[QC]|[C(Carbamidomethyl (C))A]} 10 -1 + 16.425 0 0 1.2877 1.2877 80.488 0 0 0 0.7378621416091846 7.486512420283232 0.7378621416091846 1.7609125905568135 0 0.25 0 0 0 [R{I|L}][EP][WE]SE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}][EP][WE]SC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}]{[DS]|[MA]|[CV]|TT}M[HA]SE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}]{[DS]|[MA]|[CV]|TT}M[HA]SC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][W{M(Oxidation (M))|F}][HA]SE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}]{[DS]|[MA]|[CV]|TT}M[HS]AE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}][W{M(Oxidation (M))|F}][HA]SC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}]{[DS]|[MA]|[CV]|TT}M[HS]AC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][W{M(Oxidation (M))|F}][HS]AE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}][W{M(Oxidation (M))|F}][HS]AC(Carbamidomethyl (C)){[CP]|[EA]} 1.2877;1.1497;0.89722;0.75917;0.57971;0.46523;0.44166;0.32718;0.14772;0.0096693 -;-;-;-;-;-;-;-;-;- 85 NaN NaN 137728.1 NaN 10520 3180 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13703 61.59 NaN 297980 35 0 28245 0.263 + 12468 KQRRGLVIP 9 74 533.8463134765625 NaN 0 533.8463134765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KQRRGLVIP_ REV__DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;REV__ENSG00000124228|ENST00000618172|DDX27;REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF;REV__nc|ENSG00000124228|Q96GQ7|DDX27 0.6014990680409731 0.29233206172879045 2 V 1 -1 4.6041 0 0 0.43243 0 0 131.18324466884013 831.416865856021 962.6001105248611 0 0 0 0 0 0 0 0 0 V 0.43243 + + 47 + NaN NaN 129575.7 NaN 10521 3180 13698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13705 61.594 NaN 1891500 35 0 314190 0.327 + -1 SKKCHACCFC 10 110 593.735115792883 1185.455678652566 2 593.7353515625 MULTI HCD FTMS 0 0 0 13704 709892.9375 0.306008252045715 5 -0.12320709228515625 1 Carbamidomethyl (C) _SKKC(Carbamidomethyl (C))HACCFC_ REV__ENSG00000163637|ENST00000638394|PRICKLE2 7.289230182591677 0.43672065049472153 2 [YN]{I|L}S 4 -1 36.019 0 0 3.0384 0 0 0 705.2107500239127 705.2107500239127 14.849297555762341 0 0 0 0 0 2 0.4247425010840047 0.6989700043360187 [YN]{I|L}S 3.0384 - 309 NaN NaN 374198 NaN 10522 3181 13704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13706 61.599 NaN 1033800 35 0 197460 0.263 + 24358 RYIDRIHIFF 10 65 460.5908872349479 1378.7508323050438 3 460.591064453125 MULTI HCD FTMS 0 0 0 13704 555683 0.058567778494248754 45 -1.0934104919433594 2 Unmodified _RYIDRIHIFF_ ENSG00000174231|ENST00000304992|PRPF8 16.274544907608252 0.35888541478244573 2 R[H{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 42.224 0 0 3.0625 0 0 547.2753773419937 0 547.2753773419937 0 35.233871898888154 0 0 0 1.3807196863200843 0 0 0 + R[H{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0625 + + 47 NaN NaN 258006.8 NaN 10523 3181 13704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13707 61.602 NaN 1313200 35 0 253350 0.261 -1 0 85 429.0863448516664 428.0790683850664 1 429.08856201171875 MULTI HCD FTMS 0 0 0 13704 232965.546875 0.7248422559190187 -13 0.15473556518554688 3 NaN NaN 2 [PS]Y 3 -1 27.324 0 0 6.383 0 0 0 77.90838002314601 77.90838002314601 10.386029632130356 0 0 0 0 0 1.6989700043360187 0.28872548999643577 0 [PS]Y 6.383 - 21 NaN NaN 287117.9 NaN 10524 3181 13704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13708 61.606 NaN 252310 35 0 21436 0.261 + 10659 IPVESEVNL 9 72 500.271541979234 998.528531025268 2 500.2718811035156 MULTI HCD FTMS 0 0 0 13704 140861.171875 0.1714292195941688 17 -0.3119010925292969 4 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 32.30548876998284 0.10066689432505688 2 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}VN{I|L} 9 3 + 31.338 0 0 3.1385 3.1385 88.568 0 0 0 0.09611399466193404 10.853773429906667 0.09611399466193404 31.33832349494695 0 0.5 0 0.7887254899964358 0.6109243748081782 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{[ES]|[DT]|[{I|L}C]}VN{I|L} 3.1385 - 50 NaN NaN 125871.1 NaN 10525 3181 13704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13709 61.609 NaN 238050 35 0 38468 0.261 -1 RLYKPMYYF 9 48 432.8852249035186 NaN 0 432.8853759765625 PEAK HCD FTMS 0 0 0 13704 132187.453125 0.6197837232428796 -11 0.1402740478515625 5 Oxidation (M) _RLYKPM(Oxidation (M))YYF_ OR51T1|p.H58Y|1|0.05|ENSG00000176900|chr11:4882071-4882071|C/T|missense_variant 1.0714618166137932 0.2900546878344058 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 127830.3 NaN 10526 3181 13704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13710 61.612 NaN 345060 35 0 26034 0.261 + 32929 YAHDEVAPF 9 76 524.7426450195038 NaN 0 524.7958374023438 PEAK HCD FTMS 0 0 0 13704 53956.765625 0.4809872094310032 -2 0.038677215576171875 6 Unmodified _YAHDEVAPF_ ENST00000443339.5_1_3:9471730-9475758:+|nuORF 18.13498045792455 0.19991664011725976 2 CV 2 8 20.969 0 0 2.0019 0 0 131.0984045789216 711.2752373770923 842.3736419560139 0 0 0 0 0 1 0 0 0 CV 2.0019 - 55 + NaN NaN 146505.3 NaN 10527 3181 13704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13712 61.617 NaN 2242500 35 0 239420 0.327 + 2883 DYSKYPFEV 9 117 574.2686772964646 1146.522801659729 2 574.2684936523438 MULTI HCD FTMS 0 0 0 13711 1530515.75 0.38250897312330423 6 -0.12610626220703125 1 Unmodified _DYSKYPFEV_ ENSG00000158481|ENST00000368170|CD1C 29.081581746732265 0.1154664336125038 2 SPY{M(Oxidation (M))|F}KT{I|L} 7 7 66.52 0 0 5.8019 0 0 292.0692725923214 0 292.0692725923214 0 8.60038831858624 0 0 0 2.3979400086720375 0 1.7346368802282015 0 SPY{M(Oxidation (M))|F}KT{I|L} 5.8019 - 1566 NaN NaN 422865.1 NaN 10528 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13713 61.622 NaN 1797400 35 0 212530 0.261 + 20274 NYLSIFRKF 9 110 594.3323263319932 1186.6500997307862 2 594.3323974609375 MULTI HCD FTMS 0 0 0 13711 595314.125 0.43398399316489605 5 -0.11662673950195312 2 Unmodified _NYLSIFRKF_ ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF 110.5527297667825 0.0028521687250969148 2 NY{I|L}S{I|L}{M(Oxidation (M))|F}RK{M(Oxidation (M))|F} 9 0 + 83.897 0 0 7.0701 7.0701 94.597 0 0 0 48.371804965004635 5.519447680197146 5.519447680197146 38.97533680924783 0 1.8129529932484498 2 0.6505149978319906 0.6109243748081782 + + NY{I|L}S{I|L}{M(Oxidation (M))|F}RK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}S{I|L}{M(Oxidation (M))|F}RK{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}][RH]{I|L}S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}S{I|L}{M(Oxidation (M))|F}[VG]K{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]K{I|L}S{M(Oxidation (M))|F}DK{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]K{I|L}S{I|L}[YN]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[HG]|PP}[{I|L}V]NK{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}][YT][{I|L}V]NK{M(Oxidation (M))|F} 7.0701;3.7856;3.2925;3.0096;2.5152;1.5141;1.2248;1.1457 +;-;-;-;-;-;-;- + 598 + NaN NaN 358507.2 NaN 10529 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13714 61.625 NaN 2172500 35 0 543050 0.261 + 1017 AYFTSRDLF 9 103 560.2774987591188 1118.5404445850374 2 560.2777709960938 MULTI HCD FTMS 0 0 0 13711 1066082.25 0.6871617582732429 -2 0.042018890380859375 3 Unmodified _AYFTSRDLF_ LIMK2-ATXN10|2|fusion;nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2 114.6490535036381 0.0021834323520089267 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RV]ES{M(Oxidation (M))|F} 9 3 + 83.355 0 0 7.4521 7.4521 66.477 0 0 0 23.398255349109505 55.188324713653074 23.398255349109505 0 0 1.4247425010840047 2 1.3243923658886185 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RV]ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]TES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]TEYA;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RV]EYA;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]AV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[RV]T{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T[RV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]};[Y{M(Oxidation (M))|F}]AT[RV]ES{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]A[RV]TES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T{[SA]|[TG]}{M(Oxidation (M))|F}A{[QN]|[E{I|L}]|[KN]} 7.4521;7.4521;6.732;6.732;5.8765;5.2815;5.2815;4.8613;4.6032;4.181 -;-;-;-;-;-;-;-;-;- 2213 NaN NaN 419336.1 NaN 10530 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13715 61.628 NaN 1763200 35 0 280020 0.263 -1 YDSCCVIDKIT 11 83 439.5337764924605 1315.5795000775815 3 439.8682556152344 MULTI HCD FTMS 0 0 0 13711 304019.09375 0.16664845776607384 20 -0.3895721435546875 4 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 28.181266145913348 0.21306642658310945 2 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 -1 82.304 0 0 6.2561 0 0 0 128.07160364322502 128.07160364322502 73.38676600919719 0 0 0 0 1.7302046884880937 2 1.8169015600442577 0 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 6.2561 - 679 + NaN NaN 355735.5 NaN 10531 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13716 61.632 NaN 467760 35 0 28629 0.261 + -1 MQAPFGLSPSM 11 74 599.2689042018259 NaN 0 599.288818359375 PEAK HCD FTMS 0 0 0 13711 86309.3046875 0.6751545478518528 -4 0.07382583618164062 5 2 Oxidation (M) _M(Oxidation (M))QAPFGLSPSM(Oxidation (M))_ REV__ENSG00000111087|ENST00000228682|GLI1;REV__GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant;REV__nc|ENSG00000111087|P08151-2|GLI1;REV__nc|ENSG00000111087|P08151-3|GLI1 5.731851221503515 0.3258605322397891 2 VVT[HM]TV 7 -1 18.447 0 0 1.5417 0 0 165.00463077983733 261.09104334049067 426.095674120328 0 0 0 0 0 0 0 0.3252574989159953 0 VVT[HM]TV 1.5417 - 183 + NaN NaN 157620.8 NaN 10532 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13717 61.635 NaN 641080 35 0 66094 0.261 -1 DYCLENKTL 9 86 578.270665882522 1154.526778831844 2 578.2720947265625 MULTI HCD FTMS 0 0 0 13711 196050.125 0.19181014965376908 15 -0.2764892578125 6 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))LENKTL_ ENSG00000075290|ENST00000343737|WNT8B 36.506200033944 0.08138327636155518 2 DYSP 4 -1 53.554 0 0 4.6386 0 0 0 689.3288668268186 689.3288668268186 28.50452252056609 0 0 0 0 0.7614393726401688 2 0.4247425010840047 0 DYSP 4.6386 - 158 + NaN NaN 178247.3 NaN 10533 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13718 61.638 NaN 295900 35 0 55614 0.261 -1 WYCHCFPCC 9 63 609.7031760673403 NaN 0 609.910400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _WYCHCFPC(Carbamidomethyl (C))C_ POTEF|p.C102Y|1|0.14|ENSG00000196604|chr2:130120211-130120211|C/T|missense_variant 0.6014990680409731 0.29233206172879045 2 {I|L} 1 -1 4.6041 0 0 0.37819 0 0 626.0429355313619 475.23652063541255 1101.2794561667745 0 0 0 0 0 0 0 0 0 {I|L} 0.37819 - 4 + NaN NaN 143999.8 NaN 10534 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13719 61.642 NaN 226320 35 0 7570.7 0.261 -1 0 57 607.5372924804688 NaN 0 607.5372924804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 S 1 -1 6.9897 0 0 0.5762 0 0 810.9065569318374 312.09980188541255 1123.00635881725 0 0 0 0 0 0 0 0 0 S 0.5762 - 22 + NaN NaN 118089.7 NaN 10535 3182 13711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13721 61.646 NaN 1231300 35 0 61459 0.327 -1 DNADEMIKTL 10 119 583.2740892778603 1164.5336256225205 2 583.274169921875 MULTI HCD FTMS 0 0 0 13720 953124.5 0.35518990721642857 7 -0.12340545654296875 1 Oxidation (M) _DNADEM(Oxidation (M))IKTL_ tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 34.93206674587334 0.18938571726943593 2 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 85.141 0 0 7.3111 7.3111 93.563 0 0 0 17.10197049941479 60.805840530896596 17.10197049941479 18.737125054200234 0 2.6237125054200234 2 1.2070683865866922 0 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DEY{M(Oxidation (M))|F}KT{I|L};[{I|L}T]K{M(Oxidation (M))|F}[YE]SYD;[{I|L}T]K{M(Oxidation (M))|F}[YE]YSD;[YG][YE][YE]KT{I|L} 7.3111;5.7021;1.1689;1.0315;0.93807 -;-;-;-;- 1322 NaN NaN 288231.9 NaN 10536 3183 13720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13722 61.651 NaN 1964000 35 0 157890 0.261 + 27104 SYMGHFDLL 9 116 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13720 1287322.625 0.15289470143003264 40 -0.9594459533691406 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 2 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L} 9 2 + 51.008 0 0 4.6477 4.6477 88.496 0 0 0 7.093560776568779 11.261693775385773 7.093560776568779 14.64165367738061 0 1.4291746928241125 2 0.6505149978319906 0 SY{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}VE{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}{I|L}EAW{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}VVDW{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GH{M(Oxidation (M))|F}SY{I|L};SY[HV]DV{M(Oxidation (M))|F}[MT];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GDH{M(Oxidation (M))|F}SY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DGH{M(Oxidation (M))|F}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[YR]{M(Oxidation (M))|F}SY{I|L};{[VA]|[{I|L}G]}{M(Oxidation (M))|F}DH{M(Oxidation (M))|F}SY{I|L};SNW{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}VE{I|L} 4.6477;3.3136;2.242;1.9687;1.6122;1.3511;1.3511;1.3141;0.96298;0.93964 -;-;-;-;-;-;-;-;-;- 4326 + NaN NaN 392599.3 NaN 10537 3183 13720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13723 61.654 NaN 1218300 35 0 192480 0.261 + 31512 VYGFLRNGF 9 95 536.7823465104161 1071.5501400876321 2 536.7822265625 MULTI HCD FTMS 0 0 0 13720 723230.4375 0.8095414158235348 5 -0.09675979614257812 3 Unmodified _VYGFLRNGF_ ENST00000343327.6_1_9:115030452-115095785:-|nuORF 154.46347324262513 4.107785341423729E-06 2 VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F} 9 0 + 108.71 0 0 10.145 10.145 95.684 0 0 0 92.20358036011017 14.973024840566467 14.973024840566467 11.95046257204389 0 2.416386562212267 2 0 1.3737125054200234 + + VYG{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VYG{M(Oxidation (M))|F}{I|L}GNR{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}{I|L}RNG{M(Oxidation (M))|F};VYGQ[HK]PP{M(Oxidation (M))|F};VY[KG]WYTR;[YV]G{M(Oxidation (M))|F}{I|L}RGGG{M(Oxidation (M))|F};VYG[AG][HK]PP{M(Oxidation (M))|F};[YV]P[HK]QPG{M(Oxidation (M))|F};[YV]P[HK]QGP{M(Oxidation (M))|F} 10.145;9.0302;7.9803;6.9032;6.61;6.2393;6.0439;5.7507;5.62;5.422 +;-;-;+;-;-;-;-;-;- + 2933 + NaN NaN 268578 NaN 10538 3183 13720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13724 61.658 NaN 827180 35 0 91504 0.261 -1 LRSDPDDARAM 11 98 631.7937182060457 1261.5728834788913 2 631.7940673828125 MULTI HCD FTMS 0 0 0 13720 413111.71875 0.9410264935947991 -2 0.052001953125 4 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 27.628801355627647 0.21662447369784368 2 [R{I|L}][EP][WE]SQ 8 -1 49.314 0 0 3.9089 0 0 0 233.05759393475878 233.05759393475878 21.650830338269458 0 0 0 0 1.9361818737241734 1.3979400086720375 0.3807196863200844 0.25 [R{I|L}][EP][WE]SQ 3.9089 - 1147 NaN NaN 216734.7 NaN 10539 3183 13720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13725 61.661 NaN 303280 35 0 11199 0.261 -1 CGQQPVVEKCE 11 74 638.7846851632095 1275.5548173932189 2 639.7908325195312 MULTI HCD FTMS 0 0 0 13720 84745.9296875 0.6478513391661069 3 -0.07120513916015625 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))GQQPVVEKCE_ ENSG00000133424|ENST00000397394|LARGE1;nc|ENSG00000133424|O95461-2|LARGE1 7.608950283845883 0.38555039536024605 2 [R{I|L}][EP]EWSE{[QC]|[C(Carbamidomethyl (C))A]} 10 -1 + 24.371 0 0 1.9106 1.9106 80.044 0 0 0 4.259687322722812 10.642040441009044 4.259687322722812 0.5861300751017815 0 0.4247425010840047 0 0 0 [R{I|L}][EP]EWSE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AE{[QC]|[C(Carbamidomethyl (C))A]};[R{I|L}][EP]EWSC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][EP]EWSQ[EC];[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AQ[EC];[R{I|L}][EP]EWCQ{[ES]|[DT]|[{I|L}C]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}SQ{[ES]|[DT]|[{I|L}C]};[R{I|L}][EP]EWS[CG]{[CP]|[EA]};[R{I|L}][EP]EWS[AG][EC] 1.9106;1.8646;1.6746;1.6287;1.6221;1.5762;1.4797;1.4337;0.95613;0.90364 -;-;-;-;-;-;-;-;-;- 362 NaN NaN 136181.6 NaN 10540 3183 13720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13726 61.664 NaN 366940 35 0 59084 0.264 -1 PERLEMMKY 9 87 410.1965355062388 1227.5677771189164 3 410.19580078125 MULTI HCD FTMS 0 0 0 13720 177149.484375 0.9523783403186599 -1 0.029346466064453125 6 2 Oxidation (M) _PERLEM(Oxidation (M))M(Oxidation (M))KY_ tr|U7T0G0|U7T0G0_FUSNULargeribosomalsubunitproteinbL33OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmGPE=3SV=1 27.223235318498237 0.1251536255799991 2 [EP]E[{M(Oxidation (M))|F}T]E 6 -1 36.259 0 0 2.9537 0 0 0 492.2584497294221 492.2584497294221 23.494894119100103 0 0 0 0 1 1.6989700043360187 0.805462187404089 0 [EP]E[{M(Oxidation (M))|F}T]E 2.9537 - 58 NaN NaN 141367.6 NaN 10541 3183 13720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13728 61.669 NaN 635990 35 0 49606 0.327 + 5842 FPDAVKQIL 9 91 515.8001339163935 1029.585714899587 2 515.7999877929688 MULTI HCD FTMS 0 0 0 13727 382369.03125 0.8751816677620914 -1 0.022686004638671875 1 Unmodified _FPDAVKQIL_ ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;nc|ENSG00000142733|O95382-3|MAP3K6 55.50274090549119 0.023872834264864425 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQ{I|L}{I|L} 9 0 + 80.901 0 0 7.8576 7.8576 91.804 0 0 0 19.346237737811762 55.77037404299105 19.346237737811762 9.208187539523749 0 1.8807196863200843 1.5228787452803376 0.7302046884880937 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVK[AG]{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVKQ{I|L}{I|L};{M(Oxidation (M))|F}PDAVKQ{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VKQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK[AG]{I|L}{I|L};[DP]AV{M(Oxidation (M))|F}KQ{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VK[AG]{I|L}{I|L};[DP]AV{M(Oxidation (M))|F}K[AG]{I|L}{I|L};{I|L}Y{I|L}{NN|[MP]|[D{I|L}]|[EV]}[PA]{I|L}{I|L} 7.8576;6.9632;5.072;4.6842;4.294;4.1777;3.6374;3.3997;2.743;2.2906 +;-;-;+;-;-;-;-;-;- + 772 NaN NaN 185568.6 NaN 10542 3184 13727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13729 61.674 NaN 551670 35 0 64173 0.261 -1 SFDGIIAMM 9 72 508.7249585683826 1015.4353642035652 2 508.7250061035156 MULTI HCD FTMS 0 0 0 13727 169603.859375 0.6610339625996684 3 -0.06459426879882812 2 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 34.10243960390752 0.09241788333544565 2 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 41.464 0 0 4.0834 0 0 331.1562412071655 0 331.1562412071655 0 14.711309630365577 0 0 0 0.9247425010840047 0 0.4247425010840047 0 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0834 - 269 NaN NaN 177464 NaN 10543 3184 13727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13730 61.677 NaN 318140 35 0 138820 0.261 + 30387 VLLLKRVRLLG 11 54 427.3025060401449 NaN 0 427.30279541015625 PEAK HCD FTMS 0 0 0 13727 163537.125 0.5556471278014683 6 -0.10071945190429688 3 Unmodified _VLLLKRVRLLG_ REV__ENSG00000164707|ENST00000682651|SLC13A4;REV__nc|ENSG00000164707|Q9UKG4|SLC13A4 0.08335046087909445 0.3418837022149213 2 W 1 -1 3.9794 0 0 0.46674 0 0 444.41267701993985 219.07715784244377 663.4898348623836 0 0 0 0 0 0 0 0 0 W 0.46674 - 13 + NaN NaN 126151.6 NaN 10544 3184 13727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13731 61.68 NaN 397530 35 0 50602 0.261 + 5751 FPAGYMYPSM 10 76 598.2437640565032 1194.4729751798063 2 598.2435913085938 MULTI HCD FTMS 0 0 0 13727 113795.2109375 0.5517740252689379 1 -0.022701263427734375 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 52.268347100219714 0.06954005568441465 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 51.766 0 0 4.3338 0 0 535.2429066388687 0 535.2429066388687 0 46.28144697160131 0 0 0 1.7302046884880937 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 4.3338 + + 132 NaN NaN 142349.7 NaN 10545 3184 13727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13732 61.684 NaN 372250 35 0 55193 0.262 + 3811 EPEPGEPLL 9 62 490.75059675602233 979.4866405788447 2 490.7507019042969 MULTI HCD FTMS 0 0 0 13727 191395.828125 0.7635582129520861 3 -0.06459426879882812 5 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 34.10243960390752 0.09241788333544565 2 P{I|L}{I|L} 3 6 31.198 0 0 3.1851 0 0 638.254311939775 0 638.254311939775 0 22.769250191953674 0 0 0 0.5 0 0 0 + P{I|L}{I|L} 3.1851 + + 161 NaN NaN 140152.4 NaN 10546 3184 13727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13733 61.687 NaN 356020 35 0 17646 0.261 + 34867 YSDFYEAATL 10 81 590.2640100453739 NaN 0 590.2637939453125 PEAK HCD FTMS 0 0 0 13727 141301.40625 0.5168264683476085 -2 0.052032470703125 6 Unmodified _YSDFYEAATL_ REV__ENSG00000182223|ENST00000327939|ZAR1 8.745405648335112 0.33269943387702366 2 S[YE]{M(Oxidation (M))|F}K 5 -1 25.005 0 0 2.1217 0 0 292.07263301542815 229.11945520572502 521.1920882211532 0 0 0 0 0 1.6549471895720984 0 0.4247425010840047 0 S[YE]{M(Oxidation (M))|F}K 2.1217 - 32 + NaN NaN 144945.3 NaN 10547 3184 13727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13735 61.692 NaN 38547000 35 0 5116100 0.326 + 2914 DYSPYFKTI 9 106 567.2793230526404 1132.5440931720807 2 567.2798461914062 MULTI HCD FTMS 0 0 0 13734 31533086 0.20127772356428283 18 -0.3310089111328125 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 203.63889746883072 1.2993995354712843E-17 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.23 0 0 10.262 10.262 89.806 0 0 0 0.1637559924675429 0.1637559924675429 0.1637559924675429 0.1637559924675429 0 2.7302046884880937 2 2.635151878060192 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}PDY{M(Oxidation (M))|F}TK{I|L};[PS]YDY{M(Oxidation (M))|F}KT{I|L} 10.262;10.248;9.1964;8.3422;8.1933;7.2762;7.1122;6.2731;6.0462;5.8201 +;+;-;-;-;-;-;-;-;- + 3163 NaN NaN 784129.1 NaN 10548 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13736 61.696 NaN 4865400 35 0 766590 0.249 + 23432 RLPEEWSQW 9 109 615.7989392233333 1229.5833255134664 2 615.798828125 MULTI HCD FTMS 0 0 0 13734 1504720.875 0.8368590358123925 2 -0.04189300537109375 2 Unmodified _RLPEEWSQW_ ENSG00000106211|ENST00000248553|HSPB1 100.0907132914201 0.004261551473353346 2 [R{I|L}][EP]EWSQW 9 0 + 77.884 0 0 6.3342 6.3342 89.103 0 0 0 20.24104976468614 61.96009097350988 20.24104976468614 9.208187539523749 0 2.2059771852360797 1.3979400086720375 0.7742275032520141 0 + + [R{I|L}][EP]EWSQW;[R{I|L}][EP]EWS[AG]W;[R{I|L}][EP]EWQSW;[R{I|L}][EP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}EQW;[R{I|L}][EP]EW[AG]SW;[WE][EP][R{I|L}]SQW;{[QS]|[NT]}YY[R{I|L}]SQW;[YN][YT][R{I|L}]SQW;{M(Oxidation (M))|F}GQE[NG][R{I|L}]Y{M(Oxidation (M))|F};[WE][EP][R{I|L}]QSW 6.3342;5.5853;4.9031;4.7895;4.1542;2.8626;2.8014;2.3149;2.3093;1.4315 +;-;-;-;-;-;-;-;-;- + 827 NaN NaN 765015.6 NaN 10549 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13737 61.7 NaN 1069700 35 0 119680 0.261 + 13330 KYMDVQFDF 9 72 604.7681496085214 1207.5217462838427 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13734 565013 0.12692347824778194 44 -1.0811843872070312 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 78.06048673739656 0.006479972202176041 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 75.416 0 0 6.2455 6.2455 84.629 0 0 0 0.6819517757019042 7.36371556024956 0.6819517757019042 0.6819517757019042 0 1.9247425010840047 0 0.7742275032520141 0.7614393726401688 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DKQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[TA]AQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VDYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DK[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DYV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.2455;6.1891;5.9139;5.9139;5.8938;5.4987;5.4987;5.483;5.4265;5.1513 -;-;-;-;-;-;-;-;-;- 1473 NaN NaN 261169.6 NaN 10550 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13738 61.703 NaN 566340 35 0 98581 0.261 -1 HPWMQDVLL 9 68 577.7866707727143 1153.5587886122285 2 577.7863159179688 MULTI HCD FTMS 0 0 0 13734 134112.671875 0.3121244135219896 -17 0.2521247863769531 4 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 12.240655878213236 0.2545997876781172 2 V{I|L}{I|L} 3 -1 28.188 0 0 2.4435 0 0 810.311327049025 0 810.311327049025 0 15.964015683995779 0 0 0 0.5 0 0 0 V{I|L}{I|L} 2.4435 + + 53 NaN NaN 178046.9 NaN 10551 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13739 61.706 NaN 469310 35 0 68076 0.261 -1 DYCALRRCD 9 65 586.2527896103529 1170.4910262875057 2 586.2529907226562 MULTI HCD FTMS 0 0 0 13734 111561.3515625 0.12840640152426083 11 -0.17591094970703125 5 Carbamidomethyl (C) _DYCALRRC(Carbamidomethyl (C))D_ nc|ENSG00000186715|Q2TV78-2|MST1L;nc|ENSG00000186715|Q2TV78|MST1L 8.155526934196011 0.2891920862272901 2 D{I|L} 2 -1 18.583 0 0 1.5877 0 0 0 939.3564112431925 939.3564112431925 7.614393726401687 0 0 0 0 0 0 0 0 D{I|L} 1.5877 - 33 + NaN NaN 168222.6 NaN 10552 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13740 61.71 NaN 177270 35 0 7719.8 0.261 -1 MPMQDIKMIL 10 53 626.3105359094064 1250.6065188856128 2 626.3095092773438 MULTI HCD FTMS 0 0 0 13734 68926.0234375 0.40394140116283433 4 -0.07052993774414062 6 2 Oxidation (M) _M(Oxidation (M))PMQDIKM(Oxidation (M))IL_ ENSG00000185686|ENST00000405655|PRAME 2.498486711656943 0.462078817294651 2 K{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 10.802 0 0 0.86374 0 0 731.2985707013687 0 731.2985707013687 0 5.31743128760553 0 0 0 0 0 0 0 K{M(Oxidation (M))|F}{I|L}{I|L} 0.86374 + + 20 NaN NaN 112342.7 NaN 10553 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13741 61.713 NaN 58019 35 0 4375.2 0.263 -1 ACCCGSDED 9 42 480.1307678222656 NaN 0 480.1307678222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _AC(Carbamidomethyl (C))CCGSDED_ ENSG00000106404|ENST00000308344|CLDN15 0.5247636613948944 0.2927039108006614 2 T 1 -1 1.2591 0 0 0.13139 0 0 550.5243735822282 303.6483248346313 854.1726984168595 0 0 0 0 0 0 0 0 0 T 0.13139 - 1 + NaN NaN 94531.7 NaN 10554 3185 13734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13743 61.718 NaN 1155000 35 0 165470 0.327 + 13072 KYLDVKFEYL 10 80 439.90776639657025 1316.7014697899108 3 439.9076843261719 MULTI HCD FTMS 0 0 0 13742 160037.5625 0.06999793773242198 20 -0.40372467041015625 1 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 23.96415052054722 0.2869594383653431 2 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 9 7 45.047 0 0 3.4212 0 0 116.1495537113802 0 116.1495537113802 0 6.771081482726373 0 0 0 0.5 0 1.1989700043360187 0 YSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT{I|L} 3.4212 - 207 + NaN NaN 258994.3 NaN 10555 3186 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13744 61.722 NaN 616850 35 0 100330 0.261 + 27375 SYSMIVNNL 9 78 528.7551913513045 1055.4958297694088 2 528.7554321289062 MULTI HCD FTMS 0 0 0 13742 181100.9375 0.2025898449429429 10 -0.15009307861328125 2 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 82.5293158979368 0.005033931517079822 2 {I|L}VNN{I|L} 5 4 47.722 0 0 4.5213 0 0 484.1622486798844 0 484.1622486798844 0 37.21971276399756 0 0 0 1.7302046884880937 0 0 0.3252574989159953 + {I|L}VNN{I|L} 4.5213 + + 290 NaN NaN 179243 NaN 10556 3186 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13745 61.726 NaN 229330 35 0 30888 0.261 + 16041 LPSEDPYQL 9 46 531.2614286415064 1060.5083043498128 2 531.2615356445312 MULTI HCD FTMS 0 0 0 13742 63968.80859375 0.05332095400086001 21 -0.4332313537597656 3 Unmodified _LPSEDPYQL_ ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3 10.073929032068715 0.27331982688540024 2 Q{I|L} 2 7 25.217 0 0 2.3778 0 0 801.3540445903625 0 801.3540445903625 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 + Q{I|L} 2.3778 + + 22 NaN NaN 114632.3 NaN 10557 3186 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13746 61.729 NaN 249600 35 0 18006 0.261 + 7744 FYMDTSHLF 9 62 588.7553829894273 1175.4962130456545 2 588.7545776367188 MULTI HCD FTMS 0 0 0 13742 42726.7734375 0.15619441902303258 -16 0.26348114013671875 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 48.345845343767074 0.03388484103555672 2 [Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}SH{I|L}{M(Oxidation (M))|F} 9 0 + 33.139 0 0 2.8191 2.8191 87.084 0 0 0 5.2687254166250135 17.476884018817252 5.2687254166250135 16.34790779899293 0 2.079689690656103 0 0 0 + + [Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}SH{I|L}{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[DV]{I|L}CSH{I|L}{M(Oxidation (M))|F} 2.8191;1.4284 +;- + 125 NaN NaN 130466.5 NaN 10558 3186 13742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13748 61.734 NaN 701840 35 0 62134 0.327 + 604 APFKFDMEL 9 88 557.2680039090901 1112.5214548849801 2 557.26806640625 MULTI HCD FTMS 0 0 0 13747 417526.25 0.5025484676771067 -3 0.06459426879882812 1 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 121.5340881639634 0.001118397630175091 2 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 97.036 0 0 8.7221 8.7221 94.442 0 0 0 11.892653074926045 11.892653074926045 11.892653074926045 11.892653074926045 0 3.1549471895720984 0 2.166386562212267 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};AP{M(Oxidation (M))|F}[YQ]V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L} 8.7221;7.6532;6.9537;6.7152;6.3931;6.2337;6.0984;6.0157;5.9435;5.4551 +;+;-;-;-;-;-;-;-;- + 2217 + NaN NaN 196536.1 NaN 10559 3187 13747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13749 61.738 NaN 243580 35 0 11458 0.261 + -1 LRCLDTHCMQ 10 74 638.7846851632095 1275.5548173932189 2 639.28564453125 MULTI HCD FTMS 0 0 0 13747 49714.41796875 0.42014418988791724 1 -0.009479522705078125 2 Carbamidomethyl (C) _LRC(Carbamidomethyl (C))LDTHCMQ_ REV__ENSG00000089847|ENST00000318934|ANKRD24;REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24 17.11289562659939 0.35104376501799556 2 [R{I|L}][EP]EWSQ[EC] 10 -1 + 59.275 0 0 4.647 4.647 83.493 0 0 0 23.239087409443187 44.436726795685345 23.239087409443187 4.005149978319906 0 1.5629529932484498 1.3979400086720375 0 0 [R{I|L}][EP]EWSQ[EC];[R{I|L}][EP]EWSC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][EP]EWS[AG][EC];[R{I|L}][EP]EWS[CG]{[CP]|[EA]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AQ[EC];[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][EP]EW{[QC]|[C(Carbamidomethyl (C))A]}{[ES]|[DT]|[{I|L}C]};[R{I|L}][EP]EW[DN]{[MS]|[{M(Oxidation (M))|F}A]};[R{I|L}][EP]T[WD]Q[EC];[R{I|L}][EP]T[WD]C(Carbamidomethyl (C)){[CP]|[EA]} 4.647;4.333;3.9285;3.6145;3.4185;3.1045;2.9419;2.768;2.1287;1.8147 -;-;-;-;-;-;-;-;-;- 223 NaN NaN 129882.4 NaN 10560 3187 13747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13751 61.743 NaN 1219600 35 0 133100 0.327 + 26729 SYDPLYYIN 9 102 574.2686772964646 1146.522801659729 2 574.2686767578125 MULTI HCD FTMS 0 0 0 13750 638479.4375 0.15956981429199268 12 -0.20862579345703125 1 Unmodified _SYDPLYYIN_ REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1 26.88365393820708 0.12808753336095696 2 SPY{M(Oxidation (M))|F}KT{I|L} 7 -1 66.863 0 0 5.8318 0 0 292.06939147541084 0 292.06939147541084 0 13.006280776587275 0 0 0 2.3737125054200234 0 1.7931576817365436 0 SPY{M(Oxidation (M))|F}KT{I|L} 5.8318 - 907 NaN NaN 268394.8 NaN 10561 3188 13750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13752 61.747 NaN 672880 35 0 85098 0.261 + 20275 NYLSIFRKF 9 88 594.3323263319932 1186.6500997307862 2 594.3323364257812 MULTI HCD FTMS 0 0 0 13750 125863.390625 0.091754410928366 11 -0.18255233764648438 2 Unmodified _NYLSIFRKF_ ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF 55.50274090549119 0.023872834264864425 2 NY{I|L}S 4 5 56.833 0 0 4.7893 0 0 0 706.4044865131101 706.4044865131101 49.5646081018038 0 0 0 0 1.0941876774005248 2 0.3494850021680094 0 + NY{I|L}S 4.7893 + + 85 + NaN NaN 190281.9 NaN 10562 3188 13750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13753 61.751 NaN 280820 35 0 27264 0.264 + 24574 RYLNELKWSF 10 57 452.5750045518715 1354.7031842558144 3 452.57525634765625 MULTI HCD FTMS 0 0 0 13750 21794.69140625 0.0832355441476626 4 -0.04936981201171875 3 Unmodified _RYLNELKWSF_ ENSG00000163517|ENST00000295757|HDAC11;ENST00000475818.5_1_3:13522761-13543460:+|nuORF 35.995811192298525 0.18015466441198996 2 [YR]{I|L}NE{I|L}WKS{M(Oxidation (M))|F} 10 2 [YR]{I|L}N + + 53.237 13.188 2.414 3.9298 3.9298 60.877 0 0 0 0 40.04940636348586 0 0 0 1.9247425010840047 0 0 0 [YR]{I|L}NE{I|L}WKS{M(Oxidation (M))|F} 3.9298 - 84 + NaN NaN 126579.4 NaN 10563 3188 13750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13754 61.754 NaN 269550 35 0 93037 0.261 -1 VYALLMPAGV 10 65 525.2882872452326 NaN 0 525.2885131835938 PEAK HCD FTMS 0 0 0 13750 18842.185546875 0.07192972365657851 -2 0.025554656982421875 4 Oxidation (M) _VYALLM(Oxidation (M))PAGV_ ENSG00000114374|ENST00000338981|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;nc|ENSG00000114374|O00507-2|USP9Y 7.910154910731844 0.33341429274560913 2 CV 2 -1 10.969 0 0 1.0461 0 0 132.1817929607136 711.2746355018677 843.4564284625812 0 0 0 0 0 0 0 0 0 CV 1.0461 - 36 + NaN NaN 137591 NaN 10564 3188 13750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13755 61.758 NaN 160710 35 0 15530 0.261 + 10660 IPVESEVNL 9 62 500.271541979234 998.528531025268 2 500.2711181640625 MULTI HCD FTMS 0 0 0 13750 21051.01171875 0.025619256623929137 23 -0.5090484619140625 5 Unmodified _IPVESEVNL_ ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;TBC1D12-HELLS|1|fusion 19.256988751693697 0.19398022840297344 2 VN{I|L} 3 6 31.242 0 0 3.1288 0 0 654.3255482404312 0 654.3255482404312 0 27.26280941356464 0 0 0 0.5 0 0 0.3054621874040891 + VN{I|L} 3.1288 + + 12 NaN NaN 113314.8 NaN 10565 3188 13750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13757 61.762 NaN 925870 35 0 146640 0.411 -1 YDSCCVIDKIT 11 101 439.5337764924605 1315.5795000775815 3 439.5335998535156 MULTI HCD FTMS 0 0 0 13756 182205.140625 0.0693927196732236 27 -0.6308784484863281 1 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 28.181266145913348 0.21306642658310945 2 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 9 -1 77.119 0 0 5.862 0 0 0 128.07186304263908 128.07186304263908 64.9202997895334 0 0 0 0 1.774227503252014 1.6989700043360187 1.555462187404089 0 DYSP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F}KT 5.862 - 800 + NaN NaN 373349.2 NaN 10566 3189 13756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13759 61.77 NaN 1394000 35 0 129460 0.327 + 27105 SYMGHFDLL 9 107 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13758 1019889.25 0.12113176552804696 47 -1.2078781127929688 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 2 SY{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L} 9 2 + 50.018 0 0 4.5575 4.5575 84.32 0 0 0 2.380041149604878 4.572326458305355 2.380041149604878 6.49018893412736 0 1.7034021960761265 2 0.9392404878284264 0 SY{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};SY{M(Oxidation (M))|F}{[HG]|PP}[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};SY{[C(Carbamidomethyl (C))G]|[NC]}{[QN]|[E{I|L}]|[KN]}WA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}VVV[WE];{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[NP][YN]D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[DG][H{I|L}]MY{I|L} 4.5575;3.9661;3.9154;2.7054;2.6354;2.5185;2.4789;1.7169;1.672;1.4326 -;+;-;-;-;-;-;-;-;- + 2331 + NaN NaN 308188.1 NaN 10567 3190 13758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13760 61.774 NaN 653800 35 0 34991 0.261 -1 DNADEMIKTL 10 95 583.2740892778603 1164.5336256225205 2 583.2740478515625 MULTI HCD FTMS 0 0 0 13758 490314.84375 0.18271997399961934 14 -0.2857704162597656 2 Oxidation (M) _DNADEM(Oxidation (M))IKTL_ tr|U7SQT1|U7SQT1_FUSNUATPsynthasegammachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpGPE=3SV=1 26.020703789607367 0.2677231329712098 2 DYSEY{M(Oxidation (M))|F}KT{I|L} 9 -1 + 96.556 0 0 8.2914 8.2914 97.788 0 0 0 71.89076375443462 13.758535089640333 13.758535089640333 96.55607390370156 0 2.024227503252014 2 1.2491348669726232 0 DYSEY{M(Oxidation (M))|F}KT{I|L} 8.2914 - 425 + NaN NaN 200924.8 NaN 10568 3190 13758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13761 61.778 NaN 799000 35 0 94024 0.261 + 33115 YDTQYHAWC 9 94 593.735115792883 1185.455678652566 2 594.2366943359375 MULTI HCD FTMS 0 0 0 13758 287619.53125 0.19370487184171292 16 -0.35152435302734375 3 Unmodified _YDTQYHAWC_ REV__ENSG00000167291|ENST00000310924|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-2|TBC1D16;REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16 4.75600775471527 0.31496297302216103 2 [YN]{I|L} 3 -1 30.7 0 0 2.5897 0 0 0 792.2426406696846 792.2426406696846 17.512262311882765 0 0 0 0 0 2 0 0.3252574989159953 [YN]{I|L} 2.5897 - 165 NaN NaN 207775.2 NaN 10569 3190 13758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13762 61.781 NaN 615950 35 0 62920 0.261 + 1284 AYMPHTFFI 9 82 571.7701744044451 1141.5257958756902 2 571.769775390625 MULTI HCD FTMS 0 0 0 13758 172828.4375 0.2826210712650445 -12 0.2265777587890625 4 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 109.62928328672726 0.0030029239606406397 2 AY{M(Oxidation (M))|F}[YR]Y{I|L}{M(Oxidation (M))|F} 8 5 + 68.99 0 0 6.0436 6.0436 86.834 0 0 0 29.112321741503592 13.895840698003 13.895840698003 6.817496819840656 0 1.2614393726401687 2 0 0 AY{M(Oxidation (M))|F}[YR]Y{I|L}{M(Oxidation (M))|F};AY{M(Oxidation (M))|F}[YR]{I|L}Y{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PA[WQ]{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Y;[{M(Oxidation (M))|F}E]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[WQ]{M(Oxidation (M))|F}{I|L} 6.0436;5.4464;4.5945;3.1532;3.0526;2.4511;1.0107 -;-;-;-;-;-;- 644 + NaN NaN 185391.2 NaN 10570 3190 13758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13764 61.786 NaN 565320 35 0 52373 0.326 -1 LRSDPDDARAM 11 82 631.7937182060457 1261.5728834788913 2 631.7932739257812 MULTI HCD FTMS 0 0 0 13763 324178.34375 0.7384453073408049 6 -0.10792922973632812 1 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 21.536976647645854 0.2694300281126922 2 [R{I|L}][EP]T[DV]SQ 9 -1 41.645 0 0 3.3011 0 0 0 233.05719861572803 233.05719861572803 23.440447406949467 0 0 0 0 1.4916440611282624 1.154901959985743 0.3807196863200844 0 [R{I|L}][EP]T[DV]SQ 3.3011 - 296 NaN NaN 181641.2 NaN 10571 3191 13763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13766 61.792 NaN 443680 35 0 32266 0.327 + 5843 FPDAVKQIL 9 79 515.8001339163935 1029.585714899587 2 515.8001098632812 MULTI HCD FTMS 0 0 0 13765 76057.03125 0.17408240211506015 7 -0.13318252563476562 1 Unmodified _FPDAVKQIL_ ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;nc|ENSG00000142733|O95382-3|MAP3K6 57.24910588100465 0.021429789259086996 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQ{I|L}{I|L} 9 0 + 87.348 0 0 8.4838 8.4838 92.745 0 0 0 25.642492736872597 69.38933438737884 25.642492736872597 9.208187539523749 0 2.4489700043360187 2 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVK[AG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAVKAAV{I|L};[DP]{M(Oxidation (M))|F}AVKQ{I|L}{I|L};{M(Oxidation (M))|F}PDAVKQ{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VKQ{I|L}{I|L};[DP]{M(Oxidation (M))|F}AVK[AG]{I|L}{I|L};[DP]AV{M(Oxidation (M))|F}KQ{I|L}{I|L};{M(Oxidation (M))|F}PDAVK[AG]{I|L}{I|L};[DP]A{M(Oxidation (M))|F}VK[AG]{I|L}{I|L} 8.4838;7.5895;6.4404;5.8846;5.6265;5.4721;4.9903;4.8651;4.7322;4.5777 +;-;-;-;+;-;-;-;-;- + 264 NaN NaN 153103.5 NaN 10572 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13767 61.797 NaN 579840 35 0 66853 0.261 + 31513 VYGFLRNGF 9 61 536.7823465104161 1071.5501400876321 2 536.7824096679688 MULTI HCD FTMS 0 0 0 13765 153328.5 0.17162686267072222 14 -0.3288002014160156 2 Unmodified _VYGFLRNGF_ ENST00000343327.6_1_9:115030452-115095785:-|nuORF 78.14939416004806 0.006451203201226903 2 VYG{M(Oxidation (M))|F}{I|L}R 6 3 72.573 0 0 6.7727 0 0 0 333.11777673892817 333.11777673892817 51.146387799684874 0 0 0 0 1.9731975075880328 1.6989700043360187 0 0.4247425010840047 + VYG{M(Oxidation (M))|F}{I|L}R 6.7727 + + 282 + NaN NaN 172930.1 NaN 10573 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13768 61.8 NaN 403710 35 0 42404 0.261 + 35722 YYLNDLDRI 9 74 592.8009579857786 1183.5873630383571 2 592.8011474609375 MULTI HCD FTMS 0 0 0 13765 85268.9765625 0.3926004451455068 1 -0.03218841552734375 3 Unmodified _YYLNDLDRI_ ENSG00000065135|ENST00000369851|GNAI3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000214415|ENST00000398291|GNAT3;nc|ENSG00000127955|P63096-2|GNAI1 70.92866715596459 0.008787713425443074 2 YY{I|L}ND{I|L}DR{I|L} 9 0 + 84.836 0 0 7.1677 7.1677 90.574 0 0 0 68.59366274865181 7.1919646325935815 7.1919646325935815 9.208187539523749 0 2.447621246364342 2 0 0.3807196863200844 + + YY{I|L}ND{I|L}DR{I|L};YY{I|L}GGD{I|L}DR{I|L};YY{I|L}S[PS]ADR{I|L};YY{I|L}ND[RD]{I|L}{I|L};YY{I|L}[RD]AD[VG]{I|L};YY{I|L}GGD[RD]{I|L}{I|L};YY{I|L}[RD][DN]{I|L}{I|L} 7.1677;6.3897;5.0415;4.6555;3.9864;3.8775;3.3505 +;-;-;-;-;-;- + 355 + NaN NaN 145704.6 NaN 10574 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13769 61.803 NaN 196020 35 0 40997 0.261 + -1 SEEGCSMDEC 10 44 610.1839760591639 NaN 0 610.1834716796875 PEAK HCD FTMS 0 0 0 13765 55023.9453125 0.45346108074043723 2 -0.039783477783203125 4 2 Carbamidomethyl (C),Oxidation (M) _SEEGC(Carbamidomethyl (C))SM(Oxidation (M))DEC(Carbamidomethyl (C))_ REV__ENSG00000138764|ENST00000316355|CCNG2 0.4007161486938917 0.3398413315442166 2 {I|L} 1 -1 4.6041 0 0 0.37789 0 0 164.86885436266522 937.4011324518186 1102.269986814484 0 0 0 0 0 0 0 0 0 {I|L} 0.37789 - 8 + NaN NaN 133941.2 NaN 10575 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13770 61.807 NaN 150730 35 0 8882.8 0.261 -1 GCHCPPARPQP 11 59 638.7846851632095 1275.5548173932189 2 639.7909545898438 MULTI HCD FTMS 0 0 0 13765 41130.0390625 0.31442396094835945 12 -0.2630462646484375 5 2 Carbamidomethyl (C) _GC(Carbamidomethyl (C))HC(Carbamidomethyl (C))PPARPQP_ ENST00000417060.5_2_21:47720564-47722432:-|nuORF 5.731851221503515 0.39378271418728467 2 [R{I|L}][EP]EWSQ[EC] 10 -1 + 39.6 0 0 3.1045 3.1045 81.961 0 0 0 17.102868501927873 33.913187455970544 17.102868501927873 4.247425010840047 0 0.4247425010840047 1.5228787452803376 0 0 [R{I|L}][EP]EWSQ[EC];[R{I|L}][EP]EWSC(Carbamidomethyl (C)){[CP]|[EA]};[R{I|L}][EP]EWS[AG][EC];[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AQ[EC];[R{I|L}][EP]EW{[QC]|[C(Carbamidomethyl (C))A]}{[ES]|[DT]|[{I|L}C]};[R{I|L}][EP]EWS[CG]{[CP]|[EA]};[R{I|L}][EP]E{[DS]|[MA]|[CV]|TT}AC(Carbamidomethyl (C)){[CP]|[EA]} 3.1045;2.7715;2.386;2.15;2.1476;2.053;1.817 -;-;-;-;-;-;- 111 NaN NaN 115686.5 NaN 10576 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13771 61.81 NaN 226420 35 0 31422 0.264 + 3812 EPEPGEPLL 9 57 490.75059675602233 979.4866405788447 2 490.7508239746094 MULTI HCD FTMS 0 0 0 13765 52721.28125 0.2103272975704748 11 -0.23026657104492188 6 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 21.74664581756881 0.17247014374749275 2 ES{I|L} 3 7 26.95 0 0 2.7515 0 0 632.31938368965 0 632.31938368965 0 16.46591250700361 0 0 0 0 0 0.4247425010840047 0 ES{I|L} 2.7515 - 20 NaN NaN 125402.8 NaN 10577 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13772 61.813 NaN 298150 35 0 32292 0.261 -1 SFDGIIAMM 9 59 508.7249585683826 1015.4353642035652 2 508.7238464355469 MULTI HCD FTMS 0 0 0 13765 37036.296875 0.1443496048587424 11 -0.23026657104492188 7 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 16.942295170755138 0.21397866736869717 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}D]|MM}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}D]|MM}{I|L} + + 26.414 -4.3136 -0.6822 2.6013 2.6013 59.942 0 0 0 0 1.5104385236264584 0 0 0 0.9247425010840047 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}D]|MM}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6013 - 206 + NaN NaN 125211.1 NaN 10578 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13773 61.817 NaN 73381 35 0 13120 0.261 + -1 VLLNAWVM 8 34 481.26187289324304 NaN 0 481.26165771484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _VLLNAWVM(Oxidation (M))_ REV__ENSG00000178623|ENST00000407714|GPR35;REV__nc|ENSG00000178623|Q9HC97-2|GPR35 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107233.6 NaN 10579 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13774 61.82 NaN 70887 35 0 5323.2 0.261 + 22135 QIRLLRILLII 11 43 455.322367406902 NaN 0 455.16412353515625 PEAK HCD FTMS 0 0 0 13765 13020.5810546875 1 0 0 9 Unmodified _QIRLLRILLII_ ENST00000595463.5_1_19:50414393-50430957:-|nuORF;ENST00000596437.5_1_19:50414393-50430957:-|nuORF;ENST00000599788.1_2_19:50414393-50432585:-|nuORF 0 0.34212014346876374 2 H 1 11 3.0989 0 0 0.34106 0 0 503.4760508765009 265.07709680728755 768.5531476837884 0 0 0 0 0 0 0 0 0 H 0.34106 - 2 + NaN NaN 100536.5 NaN 10580 3192 13765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13776 61.825 NaN 78734 35 0 7363.7 0.411 + 21242 PRKDENESSAP 11 53 410.5314526267469 NaN 0 410.53216552734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PRKDENESSAP_ ENSG00000132604|ENST00000254942|TERF2 4.11662792887243 0.330442455561113 2 E 1 10 9.732 0 0 1.1882 0 0 86.75927255791369 600.2208477539326 686.9801203118463 0 0 0 0 0 0 0 0.4247425010840047 0 + E 1.1882 + + 2 + NaN NaN 114414.2 NaN 10581 3193 13775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13778 61.832 NaN 11964000 35 0 1560000 0.327 + 2915 DYSPYFKTI 9 118 567.2793230526404 1132.5440931720807 2 567.2799072265625 MULTI HCD FTMS 0 0 0 13777 7928739.5 0.05060965607026886 27 -0.7178993225097656 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 2 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 115.25 0 0 10.176 10.176 90.026 0 0 0 0.7834093268442643 0.7834093268442643 0.7834093268442643 0.7834093268442643 0 3.004432191740108 2 2.3143265708843046 0 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}KT{I|L};[PS]{[YD]|[{M(Oxidation (M))|F}M]}Y{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{M(Oxidation (M))|F}YDT{I|L} 10.176;10.107;8.9306;8.6819;7.6027;7.5055;6.1776;4.6475;4.6242;3.6898 +;+;-;-;-;-;-;-;-;- + 4074 + NaN NaN 734994.9 NaN 10582 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13779 61.837 NaN 530070 35 0 55977 0.261 + 13331 KYMDVQFDF 9 55 604.7681496085214 1207.5217462838427 2 604.7684936523438 MULTI HCD FTMS 0 0 0 13777 283457.0625 0.06367527173073703 53 -1.349212646484375 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 2 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 3 + 61.348 0 0 5.0805 5.0805 83.897 0 0 0 2.9440873258899813 33.27623146104628 2.9440873258899813 3.424226808222066 0 1.5 1.2218487496163564 0.3494850021680094 0 [YV]{M(Oxidation (M))|F}[SG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[TA]AQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[TA]A[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}Q[MT]{[SA]|[TG]}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VY[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.0805;4.7969;4.3216;4.1656;4.038;3.8442;3.7639;3.403;3.0914;3.0852 -;-;-;-;-;-;-;-;-;- 624 NaN NaN 170368.4 NaN 10583 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13780 61.84 NaN 576400 35 0 136490 0.261 -1 HPWMQDVLL 9 65 577.7866707727143 1153.5587886122285 2 577.7871704101562 MULTI HCD FTMS 0 0 0 13777 152407.15625 0.3547017115983134 -8 0.11470794677734375 3 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 27.628801355627647 0.12213550946336599 2 DV{I|L}{I|L} 4 -1 36.498 0 0 3.1639 0 0 695.2877064435562 0 695.2877064435562 0 30.8116097541118 0 0 0 0.5 0 0.3054621874040891 0 DV{I|L}{I|L} 3.1639 + + 28 NaN NaN 173795.5 NaN 10584 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13781 61.844 NaN 246470 35 0 71598 0.264 + 35684 YYKSRFWLL 9 49 425.9008671408067 1274.6807720226202 3 425.90093994140625 MULTI HCD FTMS 0 0 0 13777 75544.46875 0.460820920239604 3 -0.061229705810546875 4 Unmodified _YYKSRFWLL_ ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1 7.101721422024254 0.29718071671418667 2 {I|L} 1 8 20.485 0 0 1.607 0 0 1143.5863486601186 0 1143.5863486601186 0 7.4125814330318445 0 0 0 0.5 0 0 0 + {I|L} 1.607 + + 12 + NaN NaN 128696.1 NaN 10585 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13782 61.847 NaN 765560 35 0 169720 0.261 + 4268 EVILIDPFHK 10 48 404.23251848002667 1209.67572604028 3 404.2325439453125 MULTI HCD FTMS 0 0 0 13777 143816.03125 0.1125402733649097 -8 0.11470794677734375 5 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 3.8459078486920597 0.4549467030100971 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 6 4 26.911 0 0 2.2247 0 0 0 524.2615879516161 524.2615879516161 12.21848749616356 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 2.2247 + + 41 + NaN NaN 221252.2 NaN 10586 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13783 61.85 NaN 159220 35 0 22144 0.261 + 3813 EPEPGEPLL 9 47 490.75059675602233 979.4866405788447 2 490.75048828125 MULTI HCD FTMS 0 0 0 13777 53869.6484375 0.2149086158055183 13 -0.3185234069824219 6 Unmodified _EPEPGEPLL_ ENSG00000132394|ENST00000254730|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC 16.942295170755138 0.21397866736869717 2 S{I|L} 2 8 29.464 0 0 3.0081 0 0 761.3604603498062 0 761.3604603498062 0 29.463950151760656 0 0 0 0.4247425010840047 0 0.4247425010840047 0 S{I|L} 3.0081 - 6 NaN NaN 114113.2 NaN 10587 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13784 61.854 NaN 221820 35 0 53002 0.261 + -1 VYMLVAIPQ 9 65 525.2882872452326 NaN 0 525.2880859375 PEAK HCD FTMS 0 0 0 13777 53260.4921875 0.20332102533061044 4 -0.07398605346679688 7 Oxidation (M) _VYM(Oxidation (M))LVAIPQ_ REV__ENSG00000185000|ENST00000528718|DGAT1;REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF 5.230669730166228 0.26989974671959066 2 CV 2 -1 10.969 0 0 1.0461 0 0 132.18624114729943 711.2744234674436 843.4606646147431 0 0 0 0 0 0 0 0 0 CV 1.0461 - 11 + NaN NaN 128200.9 NaN 10588 3194 13777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13786 61.858 NaN 231930 35 0 51442 0.326 + 23025 RCFFSRRSGS 10 46 601.795584801941 1201.576616670682 2 603.2991333007812 MULTI HCD FTMS 0 0 0 13785 102060.3203125 0.4942262742109462 -29 0.43503570556640625 1 Unmodified _RCFFSRRSGS_ REV__chr12:27333136-27368262|479|10.58|0.54|4.3|+|ENST00000546179|BMAL2,BMAL2;REV__chr12:27368412-27376346|486|13.31|0.4|5.05|+|ENST00000544915|BMAL2,BMAL2;REV__ENSG00000029153|ENST00000266503|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-2|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-3|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-4|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-5|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-6|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-7|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-8|BMAL2;REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2 4.897010918128616 0.4493830473644964 2 Y[SG] 3 -1 10.458 0 0 0.87032 0 0 876.441698142775 0 876.441698142775 0 3.4678748622465623 0 0 0 0 0 0 0 Y[SG] 0.87032 - 14 NaN NaN 126876.1 NaN 10589 3195 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13787 61.863 NaN 290360 35 0 45507 0.261 -1 SYSMIVNNL 9 60 528.7551913513045 1055.4958297694088 2 528.7548828125 MULTI HCD FTMS 0 0 0 13785 87906.8046875 0.09833756896520865 19 -0.4826164245605469 2 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 32.78568957990786 0.09846250359632436 2 VNN{I|L} 4 -1 37.167 0 0 3.5213 0 0 597.2462635724625 0 597.2462635724625 0 29.095019080956064 0 0 0 1 0 0 0 VNN{I|L} 3.5213 + + 116 NaN NaN 128854.7 NaN 10590 3195 13785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13789 61.868 NaN 856810 35 0 65593 0.327 + 605 APFKFDMEL 9 87 557.2680039090901 1112.5214548849801 2 557.2681884765625 MULTI HCD FTMS 0 0 0 13788 401543.4375 0.4833110234899556 6 -0.13892745971679688 1 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 133.0521902211835 0.0004198702180815479 2 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 97.578 0 0 8.7709 8.7709 95.395 0 0 0 59.56964845046856 14.934239665113722 14.934239665113722 15.757659435244733 0 3.079689690656103 0 2.420818753952375 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}{I|L}[YN]{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{I|L}[{M(Oxidation (M))|F}E];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}D{I|L}[{M(Oxidation (M))|F}E];[{M(Oxidation (M))|F}E][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}KEPA 8.7709;7.3545;6.9933;6.2733;6.0944;6.0193;5.8674;4.1395;3.7783;3.687 +;+;-;-;-;-;-;-;-;- + 2671 + NaN NaN 214881.8 NaN 10591 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13790 61.872 NaN 416750 35 0 44110 0.261 + 7745 FYMDTSHLF 9 79 588.7553829894273 1175.4962130456545 2 588.7550048828125 MULTI HCD FTMS 0 0 0 13788 108205.078125 0.3955606275254734 -6 0.09789276123046875 2 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 88.90359156742426 0.00455469703666567 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 62.991 0 0 5.3587 5.3587 90.144 0 0 0 57.049275299015605 7.064083326475128 7.064083326475128 18.156753288559813 0 2.190614065464281 0 0.805462187404089 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}V[QA]{[WS]|[C(Carbamidomethyl (C)){I|L}]}E 5.3587;3.8141;1.4937 +;+;- + 233 + NaN NaN 157240.3 NaN 10592 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13791 61.876 NaN 202220 35 0 17616 0.261 -1 WCHMTLVAQM 10 58 638.7846851632095 1275.5548173932189 2 638.7839965820312 MULTI HCD FTMS 0 0 0 13788 42116.421875 0.22094472781295088 7 -0.15509796142578125 3 Carbamidomethyl (C) _WC(Carbamidomethyl (C))HMTLVAQM_ ENST00000218758.9_1_19:11685532-11685814:-|nuORF 13.90604991867851 0.3810395177745597 2 [R{I|L}][EP]EWSQ[EC] 10 -1 + 30.195 0 0 2.3672 2.3672 83.687 0 0 0 0.29885926180398315 17.74735947860492 0.29885926180398315 9.164539485499251 0 0.6549471895720985 0 0 0 [R{I|L}][EP]EWSQ[EC];[R{I|L}][EP]EWS[AG][EC];[YN]T[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[R{I|L}][EP]EW{[QC]|[C(Carbamidomethyl (C))A]}{[ES]|[DT]|[{I|L}C]};{[{M(Oxidation (M))|F}C]|[YS]}Q[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[{M(Oxidation (M))|F}V][WE]A[YN];[YN]A[{M(Oxidation (M))|F}V][W{M(Oxidation (M))|F}]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[{M(Oxidation (M))|F}V][C(Carbamidomethyl (C))R]M{[ES]|[DT]|[{I|L}C]} 2.3672;1.6487;0.89572;0.82121;0.79672;0.11069;0.071745;0.012745 -;-;-;-;-;-;-;- 121 NaN NaN 132998.9 NaN 10593 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13792 61.879 NaN 348930 35 0 37850 0.261 + 5752 FPAGYMYPSM 10 74 598.2437640565032 1194.4729751798063 2 598.2434692382812 MULTI HCD FTMS 0 0 0 13788 89178.640625 0.43241237570792024 13 -0.33553314208984375 4 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 2 {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 5 5 47.607 0 0 3.9856 0 0 535.2416859357437 0 535.2416859357437 0 29.27948461635836 0 0 0 1.6549471895720984 0 0 0 + {M(Oxidation (M))|F}YPS{M(Oxidation (M))|F} 3.9856 + + 272 NaN NaN 154804.6 NaN 10594 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13793 61.882 NaN 98522 35 0 6240.6 0.261 + -1 MPKYFHRCL 9 51 626.3105359094064 1250.6065188856128 2 626.2091064453125 MULTI HCD FTMS 0 0 0 13788 41918.234375 0.24566208063727146 14 -0.3550224304199219 5 Carbamidomethyl (C) _MPKYFHRC(Carbamidomethyl (C))L_ REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF 3.944395688203298 0.32111559684428237 2 S 1 -1 2.7642 0 0 0.22103 0 0 570.2798720123691 590.2830294244749 1160.562901436844 0 0 0 0 0 0 0 0 0 S 0.22103 - 2 + NaN NaN 107197.1 NaN 10595 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13794 61.885 NaN 89618 35 0 9415.6 0.263 + 30822 VPVVPEPEV 9 35 482.7712729435854 NaN 0 482.872802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VPVVPEPEV_ ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A 10.823927491677226 0.2427956001690155 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99652 NaN 10596 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13795 61.889 NaN 63631 35 0 4581.1 0.262 -1 LPGPLMMYQF 10 48 410.1965355062388 1227.5677771189164 3 410.1962585449219 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _LPGPLM(Oxidation (M))M(Oxidation (M))YQF_ ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant;ENSG00000145819|ENST00000645722|ARHGAP26;nc|ENSG00000145819|Q9UNA1|ARHGAP26 1.9063754702782614 0.46521295622613185 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.1897 0 0 1062.4883378872742 0 1062.4883378872742 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1897 + + 7 + NaN NaN 89687.9 NaN 10597 3196 13788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13797 61.894 NaN 797940 35 0 80539 0.327 -1 0 93 573.25718865366 572.24991218706 1 574.2689208984375 MULTI HCD FTMS 0 0 0 13796 14893.439453125 0.8918602719987275 1 -0.01275634765625 1 NaN NaN 2 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 -1 27.369 0 0 4.7827 0 0 0 107.05249942754747 107.05249942754747 10.625190076325065 0 0 0 0 0 1.6989700043360187 0.7614393726401688 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 4.7827 - 95 NaN NaN 223787.7 NaN 10598 3197 13796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13798 61.898 NaN 280500 35 0 21928 0.261 -1 0 70 536.1633975908234 535.1561211242233 1 538.16259765625 MULTI HCD FTMS 0 0 0 13796 35001.1875 0.40308406428828747 14 -0.35866546630859375 2 NaN NaN 2 VTW 3 -1 18.672 0 0 3.4891 0 0 130.95035522187334 0 130.95035522187334 0 7.915152119416252 0 0 0 0 0 0 0 VTW 3.4891 - 56 + NaN NaN 146371.1 NaN 10599 3197 13796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13799 61.902 NaN 172450 35 0 9101.4 0.261 -1 YKPMEQNRGL 10 52 626.3105359094064 1250.6065188856128 2 626.311279296875 MULTI HCD FTMS 0 0 0 13796 45510.55078125 0.2667148739102892 15 -0.3815765380859375 3 Oxidation (M) _YKPM(Oxidation (M))EQNRGL_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|52|1|sense 2.9952420565917617 0.4594494122822477 2 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 4 -1 14.693 0 0 1.1748 0 0 731.2990589826187 0 731.2990589826187 0 9.208187539523749 0 0 0 0 0 0 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.1748 - 31 NaN NaN 141489.9 NaN 10600 3197 13796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13801 61.906 NaN 1597700 35 0 141230 0.327 + 27106 SYMGHFDLL 9 116 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13800 903905.25 0.10735640051365446 55 -1.3990821838378906 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 74.92900055777586 0.007493270374442853 2 SY{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L} 9 2 + 48.714 0 0 4.4387 4.4387 83.945 0 0 0 4.030126897948989 3.5109715118136364 3.5109715118136364 5.957705970077001 0 1.6791746928241125 2 0.6747425010840047 0 SY{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};SY{[C(Carbamidomethyl (C))G]|[NC]}{[QN]|[E{I|L}]|[KN]}WA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}V{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[HG]|PP}SY{I|L};[{M(Oxidation (M))|F}E]EWVKN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}WEKN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[TV]|[{I|L}S]}{[YC]|[HE]}SY{I|L};{[QN]|[E{I|L}]|[KN]}VGQ{[CA]|SS}{M(Oxidation (M))|F}[MT] 4.4387;3.8958;2.2147;1.8533;1.7474;1.1053;1.057;0.82971;0.711;0.71097 -;+;-;-;-;-;-;-;-;- + 2047 + NaN NaN 333497.2 NaN 10601 3198 13800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13802 61.911 NaN 1019700 35 0 113010 0.261 + 17882 MIIEDETEF 9 98 571.7505342500652 1141.4865155669304 2 571.7701416015625 MULTI HCD FTMS 0 0 0 13800 91862.859375 0.5951116052584856 8 -0.21503067016601562 2 Oxidation (M) _M(Oxidation (M))IIEDETEF_ ENSG00000137200|ENST00000373451|CMTR1 48.345845343767074 0.03388484103555672 2 GC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 8 56.354 0 0 4.9369 0 0 74.05964262924142 0 74.05964262924142 0 24.332706060674987 0 0 0 0.4247425010840047 0 1.0994850021680094 0 GC{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.9369 - 1547 + NaN NaN 239225.9 NaN 10602 3198 13800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13803 61.914 NaN 436310 35 0 15874 0.261 + -1 VESCDDVKTL 10 88 583.2740892778603 1164.5336256225205 2 583.2742309570312 MULTI HCD FTMS 0 0 0 13800 344203.5 0.12827034582425484 22 -0.6110115051269531 3 Carbamidomethyl (C) _VESC(Carbamidomethyl (C))DDVKTL_ REV__ENSG00000137959|ENST00000370751|IFI44L;REV__ENST00000486882.5_1_1:79094613-79107491:+|nuORF;REV__IFI44L|p.L367I|1|0.67|ENSG00000137959|chr1:78641071-78641071|C/A|missense_variant 15.248480904072842 0.3684828712757339 2 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L} 9 -1 {[YD]|[{M(Oxidation (M))|F}M]} + + 50.965 23.724 8.5309 4.3765 4.3765 61.42 0 0 0 0 31.043804089302395 0 0 0 2.004432191740108 0 1.024227503252014 0 {[YD]|[{M(Oxidation (M))|F}M]}SEY{M(Oxidation (M))|F}KT{I|L} 4.3765 - 385 + NaN NaN 157024.1 NaN 10603 3198 13800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13804 61.918 NaN 639540 35 0 93270 0.263 + 33119 YDVWIQYSMI 10 64 439.8796490635009 NaN 0 439.86810302734375 PEAK HCD FTMS 0 0 0 13800 15899.673828125 0.6622916780734961 -3 0.048107147216796875 4 Unmodified _YDVWIQYSMI_ REV__ENSG00000176102|ENST00000323959|CSTF3 6.630372943996041 0.3345096087358732 2 PDD 3 -1 15.991 0 0 1.8219 0 0 415.5702929791864 132.0455263727172 547.6158193519036 0 0 0 0 0 0 0 0.6694451763165201 0 PDD 1.8219 - 24 + NaN NaN 192341.2 NaN 10604 3198 13800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13805 61.921 NaN 241730 35 0 14495 0.261 + -1 NAYSLCSLRY 10 61 623.7963813452565 1245.5782097573128 2 623.796875 MULTI HCD FTMS 0 0 0 13800 48660.41015625 0.17979875865171466 17 -0.4574241638183594 5 Carbamidomethyl (C) _NAYSLC(Carbamidomethyl (C))SLRY_ REV__ENST00000409167.7_1_2:233432069-233432267:+|nuORF 10.150570793230772 0.4161670024087991 2 [R{I|L}][EP][WE]SQ{[DS]|[MA]|[CV]|TT} 10 -1 + 28.842 0 0 2.3155 2.3155 88.08 0 0 0 1.5347590481702156 19.532796692927263 1.5347590481702156 28.841890379135933 0 1.4916440611282626 0 0 0 [R{I|L}][EP][WE]SQ{[DS]|[MA]|[CV]|TT} 2.3155 - 68 NaN NaN 126536.4 NaN 10605 3198 13800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13807 61.926 NaN 442580 35 0 74162 0.327 + 17989 MLDAIIENL 9 57 516.2756778898143 1030.5368028464286 2 516.27587890625 MULTI HCD FTMS 0 0 0 13806 108594.6015625 0.5029024843549711 -3 0.058013916015625 1 Unmodified _MLDAIIENL_ REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant 26.88365393820708 0.12808753336095696 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAV[PS]SV{I|L} 10 -1 + 44.607 0 0 4.3285 4.3285 90.39 0 0 0 13.896292993866552 23.627815773883327 13.896292993866552 44.60708479613345 0 0 1.3979400086720375 0.805462187404089 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DAV[PS]SV{I|L} 4.3285 - 228 NaN NaN 154688.4 NaN 10606 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13808 61.93 NaN 496000 35 0 46305 0.261 -1 0 73 593.735115792883 1185.455678652566 2 593.735107421875 MULTI HCD FTMS 0 0 0 13806 61747.0859375 0.026616855639095476 23 -0.6441497802734375 2 NaN NaN 2 [YN]{I|L} 3 -1 15.15 0 0 1.278 0 0 0 792.2429155512565 792.2429155512565 6.733937431123282 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L} 1.278 - 125 NaN NaN 166981.7 NaN 10607 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13809 61.934 NaN 336730 35 0 20233 0.261 -1 LRSDPDDARAM 11 55 631.7937182060457 1261.5728834788913 2 631.7935180664062 MULTI HCD FTMS 0 0 0 13806 117188.0078125 0.2669423671079454 14 -0.3822669982910156 3 Oxidation (M) _LRSDPDDARAM(Oxidation (M))_ ENST00000360694.7_1_6:35378793-35389621:+|nuORF;ENST00000418635.6_1_6:35378793-35391776:+|nuORF 11.494710602746466 0.35692862141139436 2 [R{I|L}][EP][WE]SQ 8 -1 37.478 0 0 2.9707 0 0 0 233.05774402908415 233.05774402908415 28.525684359364405 0 0 0 0 1.1549471895720984 1.3010299956639813 0.3252574989159953 0 [R{I|L}][EP][WE]SQ 2.9707 - 95 NaN NaN 154290.4 NaN 10608 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13810 61.937 NaN 777740 35 0 127440 0.261 + 23433 RLPEEWSQW 9 82 615.7989392233333 1229.5833255134664 2 616.80224609375 MULTI HCD FTMS 0 0 0 13806 60923.51953125 0.09457915836281322 16 -0.43801116943359375 4 Unmodified _RLPEEWSQW_ ENSG00000106211|ENST00000248553|HSPB1 26.268140514670165 0.13340543277302316 2 SQW 3 6 28.912 0 0 2.3514 0 0 810.403611603199 0 810.403611603199 0 10.918839861501624 0 0 0 0.8494850021680094 0 0 0.5010912013506126 + SQW 2.3514 + + 255 + NaN NaN 206159.4 NaN 10609 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13811 61.94 NaN 311780 35 0 32567 0.261 + 8362 GYKQYWCTF 9 73 598.2659615981864 NaN 0 598.2660522460938 PEAK HCD FTMS 0 0 0 13806 26784.837890625 0.23706618654056547 1 -0.026073455810546875 5 Unmodified _GYKQYWCTF_ ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-2|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2 22.736283301280096 0.1690317064107932 2 {I|L}TCW 4 8 17.203 0 0 1.4401 0 0 51.9987061208031 636.2783297174436 688.2770358382468 0 0 0 0 0 0.6694451763165201 0 0.3252574989159953 0 {I|L}TCW 1.4401 - 160 + NaN NaN 136511.6 NaN 10610 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13812 61.944 NaN 118830 35 0 10691 0.261 -1 0 41 638.14236036734 NaN 0 638.2776489257812 PEAK HCD FTMS 0 0 0 13806 25031.142578125 1 0 0 6 NaN NaN 2 A 1 -1 5.4846 0 0 0.43041 0 0 926.1271146782361 274.0830477350219 1200.210162413258 0 0 0 0 0 0 0 0 0 A 0.43041 - 6 + NaN NaN 116837.5 NaN 10611 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13813 61.947 NaN 109760 35 0 9240.1 0.262 -1 RECREAQL 8 46 531.2614286415064 1060.5083043498128 2 531.261474609375 MULTI HCD FTMS 0 0 0 13806 22485.12890625 0.018742392588982873 34 -0.9543571472167969 7 Carbamidomethyl (C) _REC(Carbamidomethyl (C))REAQL_ ENST00000337414.8_1_X:11683198-11683648:-|nuORF 10.073929032068715 0.5196730168178844 2 Q{I|L} 2 -1 24.222 0 0 2.284 0 0 801.353695972321 0 801.353695972321 0 12.672203223519531 0 0 0 0.3252574989159953 0 0 0 Q{I|L} 2.284 + + 28 NaN NaN 102913.7 NaN 10612 3199 13806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13815 61.952 NaN 433840 35 0 59038 0.327 + 24134 RYAVVLNATW 10 68 596.8276016401649 1191.6406503471296 2 596.8277587890625 MULTI HCD FTMS 0 0 0 13814 357813.125 0.3277580404488783 -5 0.09359359741210938 1 Unmodified _RYAVVLNATW_ ENSG00000099194|ENST00000370355|SCD 65.47368725323818 0.022948616544343086 2 TA{I|L}V{I|L}NATW 9 3 82.375 0 0 6.9127 0 0 204.09048670951535 0 204.09048670951535 0 72.24214396804989 0 0 0 1 0 1.555462187404089 0.4247425010840047 TA{I|L}V{I|L}NATW 6.9127 - 252 + NaN NaN 155909.7 NaN 10613 3200 13814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13816 61.956 NaN 347180 35 0 73020 0.263 -1 RMCLSRRFIMA 11 61 467.24198437920984 1398.7041237378296 3 467.2420349121094 MULTI HCD FTMS 0 0 0 13814 47528.96875 0.3823385789469649 -2 0.0454864501953125 2 Oxidation (M) _RMCLSRRFIM(Oxidation (M))A_ ENST00000547505.2_1_12:44054435-44054633:+|nuORF 2.2527281973983926 0.4090409658946738 2 {I|L}{[MS]|[{M(Oxidation (M))|F}A]} 3 -1 15.458 0 0 1.1051 0 0 1049.5394724677824 0 1049.5394724677824 0 0.9936247538460936 0 0 0 0.5 0 0 0 {I|L}{[MS]|[{M(Oxidation (M))|F}A]} 1.1051 + + 26 NaN NaN 143943.5 NaN 10614 3200 13814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13818 61.961 NaN 7549600 35 0 977490 0.327 + 2916 DYSPYFKTI 9 113 567.2793230526404 1132.5440931720807 2 567.2796020507812 MULTI HCD FTMS 0 0 0 13817 5047662.5 0.032219555590619856 34 -0.9741592407226562 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 189.73149822037072 4.1025052375754644E-13 2 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.44 0 0 10.281 10.281 90.242 0 0 0 1.210149894766701 1.210149894766701 1.210149894766701 1.210149894766701 0 3.048455006504028 2 2.3895840698003 0 + + DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}KT{I|L};{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}TK{I|L};DY{[DS]|[MA]|[CV]|TT}Y{M(Oxidation (M))|F}K[VP] 10.281;10.175;9.0196;8.2505;7.802;7.0955;5.8779;4.8763;3.7213;3.3984 +;+;-;-;-;-;-;-;-;- + 3842 + NaN NaN 626661.8 NaN 10615 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13819 61.966 NaN 889540 35 0 185650 0.261 + 23583 RPEDQPWLL 9 73 577.3033932219115 1152.592233510623 2 577.7868041992188 MULTI HCD FTMS 0 0 0 13817 64199.0234375 0.8046838569400436 2 -0.06139373779296875 2 Unmodified _RPEDQPWLL_ ENSG00000125651|ENST00000394456|GTF2F1 20.41453444215458 0.18397929046831515 2 Q[WP]{I|L}{I|L} 5 4 22.681 0 0 1.9678 0 0 497.22838027168126 0 497.22838027168126 0 11.711798521132746 0 0 0 0.9247425010840047 0 0 0.28872548999643577 + Q[WP]{I|L}{I|L} 1.9678 + + 120 NaN NaN 220027.5 NaN 10616 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13820 61.969 NaN 737550 35 0 70824 0.261 + 13332 KYMDVQFDF 9 77 604.7681496085214 1207.5217462838427 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13817 208899.640625 0.04692682998946335 60 -1.5763969421386719 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 74.19965305603844 0.007729275404663812 2 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 4 67.612 0 0 5.5993 0 0 165.07917427051467 0 165.07917427051467 0 42.28470012691339 0 0 0 0 0 2.341129063296272 0.3054621874040891 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 5.5993 - 1423 + NaN NaN 216502.1 NaN 10617 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13821 61.973 NaN 281880 35 0 45563 0.264 -1 0 48 413.2661802532431 412.2589037866431 1 413.2660827636719 MULTI HCD FTMS 0 0 0 13817 192149.953125 0.39566132108495444 -517 12.833709716796875 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 4.1211 0 0 247.1799070598837 0 247.1799070598837 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 4.1211 - 2 + NaN NaN 123988.9 NaN 10618 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13822 61.976 NaN 712830 35 0 55319 0.261 + 24007 RWFDKSFTF 9 83 617.3060196500468 1232.5974863668935 2 617.8072509765625 MULTI HCD FTMS 0 0 0 13817 120327.40625 0.3974225643233888 -3 0.055103302001953125 5 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 73.1962812333195 0.00805395026373928 2 [WR]{M(Oxidation (M))|F}DKS{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 87.374 0 0 7.0886 7.0886 94.176 0 0 0 23.86931783443302 52.14694222268717 23.86931783443302 31.29493455131808 0 1.4947026752325154 1.3979400086720375 1.2059771852360797 0.2742275032520141 + + [WR]{M(Oxidation (M))|F}DKS{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[WR]{M(Oxidation (M))|F}DKT{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};RQES[H{I|L}]{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}[QT]D[RH]S{[ET]|[MV]};[WR]{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{I|L}E;RQDT[H{I|L}]{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]S{M(Oxidation (M))|F}[H{I|L}]T{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};[WR]{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}EE{I|L};{M(Oxidation (M))|F}{I|L}E{[QS]|[NT]}[RH]S{[ET]|[MV]};{M(Oxidation (M))|F}{I|L}[QT]R[HD]S{[ET]|[MV]} 7.0886;4.5496;2.0461;1.5129;1.4783;1.4537;1.4144;1.2144;1.1073;0.90348 +;-;-;-;-;-;-;-;-;- + 1186 NaN NaN 204173.9 NaN 10619 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13823 61.979 NaN 639370 35 0 79713 0.264 + 13073 KYLDVKFEYL 10 72 439.90776639657025 1316.7014697899108 3 439.9075622558594 MULTI HCD FTMS 0 0 0 13817 36865.796875 0.01612452547890041 35 -0.990264892578125 6 Unmodified _KYLDVKFEYL_ ENSG00000100151|ENST00000356976|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1 17.86316937532769 0.34402595751606074 2 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 8 36.956 0 0 2.8067 0 0 0 851.5037091098457 851.5037091098457 7.028937514676485 0 0 0 0 0 2 1.0044321917401078 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 2.8067 - 170 NaN NaN 188363.1 NaN 10620 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13824 61.983 NaN 187820 35 0 36549 0.261 + 5435 FIEENDEVL 9 46 554.263990382886 1106.513427832572 2 554.2635498046875 MULTI HCD FTMS 0 0 0 13817 90980.4765625 0.7867519110087766 -1 0.009616851806640625 7 Unmodified _FIEENDEVL_ ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant 18.1463463914782 0.20357593197100715 2 V{I|L} 2 7 25.969 0 0 2.3469 0 0 876.350511940091 0 876.350511940091 0 10.484550065040281 0 0 0 0.5 0 0 0 + V{I|L} 2.3469 + + 4 NaN NaN 113074.7 NaN 10621 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13825 61.986 NaN 237270 35 0 14147 0.261 + 34670 YPTISLHAL 9 63 507.7844046102802 1013.5542562873604 2 507.78436279296875 MULTI HCD FTMS 0 0 0 13817 87815.0859375 0.26850863420941967 -8 0.13668441772460938 8 Unmodified _YPTISLHAL_ ENSG00000074201|ENST00000525428|CLNS1A 71.13359017698441 0.008721403657255008 2 YPT{I|L}{[TV]|[{I|L}S]}HA{I|L} 9 0 + 66.44 0 0 6.5552 6.5552 94.497 0 0 0 41.664157916184465 8.145899619259822 8.145899619259822 66.44045490946587 0 1.8129529932484498 1.3979400086720375 0.5 0 + + YPT{I|L}{[TV]|[{I|L}S]}HA{I|L} 6.5552 + + 115 + NaN NaN 130941.6 NaN 10622 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13826 61.989 NaN 440550 35 0 96255 0.261 + 35703 YYLDWIHHY 9 71 437.2047859599138 1308.5925284799414 3 437.20458984375 MULTI HCD FTMS 0 0 0 13817 53233.05078125 0.07165265566868839 -5 0.0937042236328125 9 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 51.629811660486645 0.02929079705179888 2 YY{I|L}DW{I|L}HHY 9 0 + 97.261 0 0 7.4325 7.4325 96.009 0 0 0 79.5184409613313 15.19000227735063 15.19000227735063 64.90540356723386 0 1.610924374808178 2 0.3807196863200844 0 + + YY{I|L}DW{I|L}HHY;YYR[YR]YYY 7.4325;2.4725 +;- + 241 + NaN NaN 172107.1 NaN 10623 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13827 61.999 NaN 196150 35 0 15129 0.261 -1 DHCNFGFKF 9 55 586.2527896103529 1170.4910262875057 2 586.2528686523438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _DHC(Carbamidomethyl (C))NFGFKF_ ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 KY{M(Oxidation (M))|F} 3 -1 20.802 0 0 1.7772 0 0 714.3046131818375 0 714.3046131818375 0 6.989700043360186 0 0 0 0 0 0 0 KY{M(Oxidation (M))|F} 1.7772 - 21 NaN NaN 107635.2 NaN 10624 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13828 62.002 NaN 384340 35 0 41621 0.261 -1 0 71 520.1355425591971 519.1282660925971 1 522.1358032226562 MULTI HCD FTMS 0 0 0 13817 10081.294921875 0.22148399796401777 9 -0.2613182067871094 11 NaN NaN 2 [YV]{I|L} 3 -1 27.447 0 0 5.2872 0 0 0 140.88978537875423 140.88978537875423 11.874081049124499 0 0 0 0 0 1.6989700043360187 0 0 [YV]{I|L} 5.2872 - 20 NaN NaN 145822.9 NaN 10625 3201 13817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13830 62.007 NaN 3789100 35 0 783120 0.327 + 4269 EVILIDPFHK 10 52 404.23251848002667 1209.67572604028 3 404.2325134277344 MULTI HCD FTMS 0 0 0 13829 1277907.25 1 0 0 1 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 39.922945255915025 0.1460754433722493 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}DWD 8 4 62.26 0 0 5.1469 0 0 0 223.14507471256096 223.14507471256096 41.82721341614666 0 0 0 0 1.1861818737241734 1.154901959985743 0.8494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}DWD 5.1469 - 233 + NaN NaN 657126.2 NaN 10626 3202 13829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13831 62.011 NaN 1201200 35 0 84178 0.261 + 4273 EVILIDPFHK 10 90 605.8450152136422 1209.6754774940844 2 605.8455810546875 MULTI HCD FTMS 0 0 0 13829 454592.34375 1 0 0 2 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 102.5486954659897 6.036587169858109E-05 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}WD{I|L}{I|L}{I|L} 8 6 90.725 0 0 7.4999 0 0 0 225.08822941640418 225.08822941640418 51.30719686320084 0 0 0 0 1.1549471895720984 1.6989700043360187 2.103917193908117 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}WD{I|L}{I|L}{I|L} 7.4999 - 896 NaN NaN 277905.8 NaN 10627 3202 13829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13832 62.015 NaN 309550 35 0 16921 0.261 + 25750 SLAKEKGMSL 10 68 532.295630121136 NaN 0 532.283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SLAKEKGMSL_ REV__ENSG00000172824|ENST00000648724|CES4A;REV__ENST00000535543.5_1_16:67034893-67043042:+|nuORF;REV__ENST00000543561.1_1_16:67040205-67043042:+|nuORF;REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF;REV__nc|ENSG00000172824|Q5XG92-2|CES4A;REV__nc|ENSG00000172824|Q5XG92-4|CES4A;REV__nc|ENSG00000172824|Q5XG92-6|CES4A 3.5964929083625545 0.337106189561315 2 SW 2 -1 13.271 0 0 1.249 0 0 131.12025188531726 655.3224659346814 786.4427178199987 0 0 0 0 0 0 0 0.3807196863200844 0 SW 1.249 - 72 + NaN NaN 135283.8 NaN 10628 3202 13829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13833 62.018 NaN 138850 35 0 12499 0.262 + 16755 LYDERMEDSL 10 47 424.1912913656252 1269.5520446970756 3 424.1918029785156 MULTI HCD FTMS 0 0 0 13829 50798.109375 0.6106848276026592 3 -0.07849884033203125 4 Unmodified _LYDERMEDSL_ REV__ENSG00000118997|ENST00000312428|DNAH7;REV__nc|ENSG00000118997|Q8WXX0-4|DNAH7 9.5439744041441 0.42184090036563754 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.063 0 0 1104.473002193949 0 1104.473002193949 0 1.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.063 + + 11 + NaN NaN 103878.8 NaN 10629 3202 13829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13835 62.023 NaN 769120 35 0 61767 0.327 + 606 APFKFDMEL 9 85 557.2680039090901 1112.5214548849801 2 557.268310546875 MULTI HCD FTMS 0 0 0 13834 582626.75 0.7012689152842312 13 -0.37039947509765625 1 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 133.0521902211835 0.0004198702180815479 2 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 96.991 0 0 8.7182 8.7182 95.397 0 0 0 57.74658650663447 15.954839578393347 15.954839578393347 16.095756168365014 0 3.079689690656103 0 2.635151878060192 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}YQV{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};AP{M(Oxidation (M))|F}Y[AG]V{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}DE{M(Oxidation (M))|F}{I|L};APQ[Y{M(Oxidation (M))|F}]V{M(Oxidation (M))|F}E{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{I|L}[{M(Oxidation (M))|F}E] 8.7182;7.2714;6.6098;6.3702;5.853;5.7821;5.5125;4.9519;4.2479;4.1 +;+;-;-;-;-;-;-;-;- + 2388 + NaN NaN 207606.8 NaN 10630 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13836 62.027 NaN 888090 35 0 245240 0.263 + 24009 RWFDKSFTF 9 73 411.87316990204965 1232.597680306349 3 411.8731689453125 MULTI HCD FTMS 0 0 0 13834 381011.34375 0.8908694735331524 1 -0.032779693603515625 2 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 63.960520009940105 0.0120409805053046 2 [WR]{M(Oxidation (M))|F}DKTPH{M(Oxidation (M))|F} 9 3 [WR]{M(Oxidation (M))|F} + + 41.718 5.6864 1.1623 3.3846 3.3846 60.363 0 0 0 0 3.9659125070036083 0 0 0 1.5 0 0.75 0 [WR]{M(Oxidation (M))|F}DKTPH{M(Oxidation (M))|F} 3.3846 - 452 + NaN NaN 221777.2 NaN 10631 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13837 62.031 NaN 472770 35 0 44827 0.261 + 2884 DYSKYPFEV 9 85 574.2686772964646 1146.522801659729 2 574.2686157226562 MULTI HCD FTMS 0 0 0 13834 283515.375 0.07085662134213157 27 -0.7763252258300781 3 Unmodified _DYSKYPFEV_ ENSG00000158481|ENST00000368170|CD1C 25.399314129420986 0.14091189997036632 2 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 7 6 56.269 0 0 4.9078 0 0 292.0688954084 0 292.0688954084 0 8.833763824190832 0 0 0 2.1237125054200234 0 0.9581706663129559 0 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 4.9078 - 362 NaN NaN 158128.6 NaN 10632 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13838 62.034 NaN 435290 35 0 47014 0.261 + 7746 FYMDTSHLF 9 75 588.7553829894273 1175.4962130456545 2 588.7549438476562 MULTI HCD FTMS 0 0 0 13834 219853.390625 0.8037085381405524 1 -0.032779693603515625 4 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 133.70201269244603 0.0003804610509361063 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F} 9 0 + 94.708 0 0 8.0569 8.0569 89.985 0 0 0 21.796058402355456 6.039171939081172 6.039171939081172 6.039171939081172 0 2.7856668758921828 1.3979400086720375 1.2059771852360797 0 + + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};YYMDTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DN[NP]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DGG[NP]{I|L}{M(Oxidation (M))|F};[H{I|L}]{[MG]|[TS]}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 8.0569;7.5431;6.6294;5.873;5.0897;0.045571 +;+;-;-;-;- + 278 + NaN NaN 152069.4 NaN 10633 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13839 62.038 NaN 478000 35 0 104010 0.261 + 11865 KFDDGAVFL 9 52 506.2609215000308 1010.5072900668616 2 506.2608947753906 MULTI HCD FTMS 0 0 0 13834 262406.59375 0.4554175197485634 -2 0.06139373779296875 5 Unmodified _KFDDGAVFL_ ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A 20.41453444215458 0.18397929046831515 2 V{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.5822 0 0 633.2756323829066 0 633.2756323829066 0 13.010299956639813 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F}{I|L} 3.5822 + + 124 NaN NaN 158849.1 NaN 10634 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13840 62.041 NaN 134740 35 0 28453 0.261 + 28849 TVISEDAVL 9 54 473.75831200637253 945.5020710795451 2 473.75811767578125 MULTI HCD FTMS 0 0 0 13834 99133.6953125 0.8001383850628376 -2 0.06139373779296875 6 Unmodified _TVISEDAVL_ ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant 20.453626601364224 0.18364154288633264 2 RWV{I|L} 4 7 28.532 0 0 3.0177 0 0 373.17485243965 0 373.17485243965 0 11.542294029923 0 0 0 0.5 0 0 0 RWV{I|L} 3.0177 - 28 NaN NaN 109484.8 NaN 10635 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13841 62.044 NaN 213360 35 0 18377 0.261 + -1 EHCECHCDLF 10 57 450.49531776869225 NaN 0 450.4950866699219 PEAK HCD FTMS 0 0 0 13834 44186.28515625 0.3303954339217252 5 -0.15430450439453125 7 2 Carbamidomethyl (C) _EHC(Carbamidomethyl (C))EC(Carbamidomethyl (C))HCDLF_ REV__ENSG00000119514|ENST00000375011|GALNT12 0.6976657623105312 0.3395871838311286 2 {I|L} 1 -1 3.9794 0 0 0.44266 0 0 650.8226535043783 132.04485498599846 782.8675084903767 0 0 0 0 0 0 0 0 0 {I|L} 0.44266 + + 3 + NaN NaN 127763.8 NaN 10636 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13842 62.048 NaN 188610 35 0 38303 0.261 + -1 CSIMFLPI 8 53 490.75059675602233 979.4866405788447 2 490.75054931640625 MULTI HCD FTMS 0 0 0 13834 26445.490234375 0.10550214945549101 22 -0.6421928405761719 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))SIMFLPI_ REV__ENSG00000197938|ENST00000355273|OR5H2 14.581692164780916 0.48650662947107914 2 {[QG]|[NA]}TW 4 -1 10.802 0 0 1.1028 0 0 0 504.2580998896447 504.2580998896447 3.8122813092856234 0 0 0 0 0 0 0 0 {[QG]|[NA]}TW 1.1028 - 30 NaN NaN 125396.5 NaN 10637 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13843 62.051 NaN 103050 35 0 7907.1 0.261 -1 CKNMMSTLEIN 11 60 452.8702335795681 NaN 0 452.909912109375 PEAK HCD FTMS 0 0 0 13834 12276.1044921875 1 0 0 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))KNM(Oxidation (M))MSTLEIN_ ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant 1.214830529360525 0.33867401910978034 2 {I|L} 1 -1 5.4846 0 0 0.60688 0 0 224.3590451847237 563.2630480362018 787.6220932209255 0 0 0 0 0 0 0 0 0 {I|L} 0.60688 + + 1 + NaN NaN 98509.7 NaN 10638 3203 13834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13845 62.056 NaN 1084800 35 0 81801 0.327 + 27107 SYMGHFDLL 9 109 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 13844 643857.125 0.07647060727335092 61 -1.5968551635742188 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 2 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 41.573 0 0 3.788 0 0 591.2100736800699 0 591.2100736800699 0 21.607281392838825 0 0 0 1.0356668758921828 0 0.7059771852360797 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.788 + + 637 NaN NaN 258898 NaN 10639 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13846 62.06 NaN 710200 35 0 75074 0.261 + 16743 LYCPHVSPPQ 10 79 570.7786984605716 1139.5428439879431 2 571.770263671875 MULTI HCD FTMS 0 0 0 13844 31969.298828125 0.6285040187012062 -12 0.2630462646484375 2 Unmodified _LYCPHVSPPQ_ REV__ENSG00000163638|ENST00000498707|ADAMTS9;REV__nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 19.361941925380144 0.3300069447713393 2 C{M(Oxidation (M))|F}P[QP][TA]T{M(Oxidation (M))|F} 9 -1 27.606 0 0 2.4226 0 0 129.11172657893957 0 129.11172657893957 0 15.681570206387144 0 0 0 0.28872548999643577 0 1.3169015600442577 0 C{M(Oxidation (M))|F}P[QP][TA]T{M(Oxidation (M))|F} 2.4226 - 484 + NaN NaN 195457.1 NaN 10640 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13847 62.064 NaN 313250 35 0 22158 0.261 -1 SYSMIVNNL 9 66 528.7551913513045 1055.4958297694088 2 528.7554321289062 MULTI HCD FTMS 0 0 0 13844 49764.578125 0.05566949738178312 28 -0.7891082763671875 3 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ ENSG00000116161|ENST00000367679|CACYBP;ENST00000469173.1_1_1:174976108-174977843:+|nuORF;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP 19.256988751693697 0.19398022840297344 2 V{[HG]|PP}{M(Oxidation (M))|F} 4 -1 19.041 0 0 1.804 0 0 597.2457426726676 0 597.2457426726676 0 8.908555305749317 0 0 0 1 0 0 0 V{[HG]|PP}{M(Oxidation (M))|F} 1.804 - 71 + NaN NaN 137163.2 NaN 10641 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13848 62.067 NaN 144050 35 0 6820.7 0.261 + 6251 FPEYTHQLF 9 47 591.2847863432908 1180.5550197533814 2 591.284912109375 MULTI HCD FTMS 0 0 0 13844 49417.58984375 0.3469919454243943 13 -0.36376190185546875 4 Unmodified _FPEYTHQLF_ ENSG00000128708|ENST00000264108|HAT1 7.101721422024254 0.29718071671418667 2 EPE 3 7 18.517 0 0 1.5685 0 0 807.390916892775 0 807.390916892775 0 0.5584810522916754 0 0 0 0 0 0.4247425010840047 0 EPE 1.5685 - 6 NaN NaN 105363.2 NaN 10642 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13849 62.07 NaN 344610 35 0 70234 0.264 + 16876 LYFDRKYLF 9 55 422.22907790505434 1263.665404315363 3 422.2292175292969 MULTI HCD FTMS 0 0 0 13844 36782.38671875 0.2289969407382209 -2 0.0489501953125 5 Unmodified _LYFDRKYLF_ ENSG00000186417|ENST00000335449|GLDN;nc|ENSG00000186417|Q6ZMI3-2|GLDN 17.11289562659939 0.2125047172822487 2 {I|L}Y 2 7 45.217 0 0 3.5782 0 0 0 984.4936615457523 984.4936615457523 24.97425010840047 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.5782 + + 15 + NaN NaN 139317.3 NaN 10643 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13850 62.074 NaN 277360 35 0 7365.1 0.261 -1 0 53 623.1716667564133 3732.9863417388797 6 623.291259765625 MULTI HCD FTMS 0 0 0 13844 10979.107421875 0.23063903797399798 -1 0.032779693603515625 6 NaN NaN 2 MQS 3 -1 14.693 0 0 0.39359 0 0 2576.44940936686 807.3789766900999 3383.82838605696 0 0 0 0 0 0 0 0 0 MQS 0.39359 - 16 + NaN NaN 147926.1 NaN 10644 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13851 62.077 NaN 474170 35 0 93172 0.264 + -1 RPCPAFHICF 10 73 416.53293026902 1246.5769614072601 3 416.53265380859375 MULTI HCD FTMS 0 0 0 13844 47362.28515625 0.6980165894831184 -1 0.032779693603515625 7 Carbamidomethyl (C) _RPCPAFHIC(Carbamidomethyl (C))F_ REV__ENST00000276461.9_2_8:37612207-37612276:+|nuORF 3.5870582119611467 0.4563168352879256 2 T{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9625 0 0 980.450418293782 0 980.450418293782 0 1.6330312844383599 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 1.9625 - 21 + NaN NaN 162059.3 NaN 10645 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13852 62.08 NaN 548820 35 0 103460 0.261 + -1 RQCSLSKFYFF 11 81 494.9113819312456 1481.7123163939368 3 494.91156005859375 MULTI HCD FTMS 0 0 0 13844 74057.765625 0.598101927121795 -5 0.12986373901367188 8 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))SLSKFYFF_ REV__ENSG00000064989|ENST00000392370|CALCRL 6.623454094837244 0.3898724468670146 2 E{M(Oxidation (M))|F}C{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 56.882 0 0 3.8389 0 0 435.2362538068375 0 435.2362538068375 0 43.06937881901167 0 0 0 2.3494850021680094 0 0 0.4247425010840047 E{M(Oxidation (M))|F}C{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8389 - 230 NaN NaN 165504.6 NaN 10646 3204 13844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13854 62.085 NaN 1387400 35 0 197670 0.327 + 5181 FFDAELSQM 9 86 552.2393087556661 1102.4640645781321 2 552.2395629882812 MULTI HCD FTMS 0 0 0 13853 599422.625 0.10819535817196095 -4 0.12372207641601562 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 96.382 3.7236 1.266 8.7424 8.7424 68.421 0 0 0 0 73.82855434756343 0 0 0 3.1861818737241734 0 1.676935982160881 0.8945990182825422 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.7424 + + 1691 + NaN NaN 310390.7 NaN 10647 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13855 62.09 NaN 752530 35 0 82880 0.261 + 23397 RLFGTTVTF 9 66 521.2897787048506 1040.5650044765011 2 521.2901611328125 MULTI HCD FTMS 0 0 0 13853 265067.6875 0.789784842312421 -1 0.02954864501953125 2 Unmodified _RLFGTTVTF_ ENSG00000071553|ENST00000369762|ATP6AP1 63.960520009940105 0.0120409805053046 2 [YV]{I|L}[QA]TVTT 9 6 61.647 0 0 5.9244 0 0 0 60.99181607958011 60.99181607958011 46.585390679490075 0 0 0 0 2.0669015600442577 1.3010299956639813 0.75 0 [YV]{I|L}[QA]TVTT 5.9244 - 407 NaN NaN 204500.4 NaN 10648 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13856 62.093 NaN 261700 35 0 9865.4 0.261 + -1 VESCDDVKTL 10 63 583.2740892778603 1164.5336256225205 2 583.2740478515625 MULTI HCD FTMS 0 0 0 13853 140008.1875 0.0521752353734117 29 -0.817718505859375 3 Carbamidomethyl (C) _VESC(Carbamidomethyl (C))DDVKTL_ REV__ENSG00000137959|ENST00000370751|IFI44L;REV__ENST00000486882.5_1_1:79094613-79107491:+|nuORF;REV__IFI44L|p.L367I|1|0.67|ENSG00000137959|chr1:78641071-78641071|C/A|missense_variant 7.101721422024254 0.4377131641736035 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 36.695 0 0 3.151 0 0 0 796.3876654997267 796.3876654997267 5.71543093755686 0 0 0 0 0.9247425010840047 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}S 3.151 - 144 NaN NaN 151304.6 NaN 10649 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13857 62.097 NaN 360330 35 0 63529 0.261 -1 MPVLEQSVL 9 51 516.2756778898143 1030.5368028464286 2 516.27587890625 MULTI HCD FTMS 0 0 0 13853 183459.90625 0.8496043201517234 3 -0.09197616577148438 4 Oxidation (M) _M(Oxidation (M))PVLEQSVL_ ENSG00000073614|ENST00000399788|KDM5A;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 13.042465956692817 0.2476723265019929 2 SV{I|L} 3 -1 32.307 0 0 3.135 0 0 713.3306141584 0 713.3306141584 0 25.31743128760553 0 0 0 0 0 0.8494850021680094 0 SV{I|L} 3.135 + + 22 NaN NaN 148899.4 NaN 10650 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13858 62.1 NaN 400950 35 0 44653 0.261 + 9291 HPNYLGDLIM 10 74 594.7898507465923 1187.5651485599844 2 594.7905883789062 MULTI HCD FTMS 0 0 0 13853 118478.9296875 0.67697851219836 3 -0.09197616577148438 5 Oxidation (M) _HPNYLGDLIM(Oxidation (M))_ ENSG00000143815|ENST00000272163|LBR;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENST00000530650.5_1_11:64879967-64883522:+|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2 41.95555342248728 0.12843670176738353 2 [YN][YE]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}{M(Oxidation (M))|F} 9 5 + 45.881 0 0 3.8635 3.8635 82.84 0 0 0 12.381062318217104 19.93887181533495 12.381062318217104 4.776296993281406 0 0.8807196863200843 1.6989700043360187 0.4247425010840047 0.3494850021680094 [YN][YE]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}{M(Oxidation (M))|F};[YN]{I|L}[VS][W{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F} 3.8635;3.4613 -;- 110 NaN NaN 157656.1 NaN 10651 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13859 62.103 NaN 262900 35 0 23070 0.261 -1 KYGMSMYVL 9 48 554.263990382886 1106.513427832572 2 554.2640991210938 MULTI HCD FTMS 0 0 0 13853 87418.2578125 0.7559476932811575 3 -0.09197616577148438 6 Oxidation (M) _KYGM(Oxidation (M))SMYVL_ ENSG00000119471|ENST00000398805|HSDL2;ENST00000480881.1_1_9:115179142-115201087:+|nuORF;nc|ENSG00000119471|Q6YN16-2|HSDL2 10.073929032068715 0.27331982688540024 2 {I|L}D{[YC]|[HE]}V{I|L} 6 -1 34.308 0 0 3.1005 0 0 382.13379464616776 0 382.13379464616776 0 24.84379323607137 0 0 0 0.5 0 0.23965182871044374 0 {I|L}D{[YC]|[HE]}V{I|L} 3.1005 - 70 NaN NaN 130483.8 NaN 10652 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13860 62.107 NaN 309630 35 0 97437 0.262 -1 ACGNDDCR 8 46 455.6604219998585 909.306291066517 2 455.6605224609375 MULTI HCD FTMS 0 0 0 13853 116247.7890625 0.4074604859869264 -4 0.12372207641601562 7 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.5392561982033289 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.2275079628046 0 744.2275079628046 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 10 + NaN NaN 133544.3 NaN 10653 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13861 62.11 NaN 263050 35 0 11462 0.261 + -1 FGVVTFMDSIM 11 63 631.7937182060457 1261.5728834788913 2 631.794921875 MULTI HCD FTMS 0 0 0 13853 29053.76171875 0.06618151525369702 20 -0.579864501953125 8 Oxidation (M) _FGVVTFMDSIM(Oxidation (M))_ REV__ENSG00000119685|ENST00000298832|TTLL5;REV__ENST00000555422.5_1_14:76198560-76243086:+|nuORF 5.296884461304476 0.39569033063702824 2 [YN]A 3 -1 27.492 0 0 2.1792 0 0 0 910.4062324381288 910.4062324381288 5.536049848239344 0 0 0 0 0 1.6989700043360187 0 0.3054621874040891 [YN]A 2.1792 - 49 NaN NaN 147287.2 NaN 10654 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13862 62.113 NaN 132050 35 0 9091.2 0.261 -1 VRNFLKEDAM 10 41 619.811967314447 1237.6093816956939 2 619.8130493164062 MULTI HCD FTMS 0 0 0 13853 59574.7578125 0.8470243727100114 2 -0.06571197509765625 9 Oxidation (M) _VRNFLKEDAM(Oxidation (M))_ ENSG00000204520|ENST00000449934|MICA;nc|ENSG00000204520|Q29983|MICA 8.745405648335112 0.42901288225909884 2 AT{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 24.253 0 0 1.9596 0 0 829.4444447248062 0 829.4444447248062 0 24.252509456924827 0 0 0 0.4247425010840047 0 0.3807196863200844 0 AT{[MS]|[{M(Oxidation (M))|F}A]} 1.9596 - 10 NaN NaN 122141.9 NaN 10655 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13863 62.117 NaN 252480 35 0 20487 0.264 -1 YYLWMCSTLA 10 68 441.864878272329 1322.572805417187 3 441.86456298828125 MULTI HCD FTMS 0 0 0 13853 80286.6484375 0.9625408883778661 -2 0.062328338623046875 10 Carbamidomethyl (C),Oxidation (M) _YYLWM(Oxidation (M))C(Carbamidomethyl (C))STLA_ ENSG00000116521|ENST00000302631|SCAMP3;ENST00000472397.5_1_1:155226487-155230214:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF;nc|ENSG00000116521|O14828-2|SCAMP3 9.5439744041441 0.42184090036563754 2 YYQQDA 6 -1 44.587 0 0 3.3713 0 0 0 551.2116793268186 551.2116793268186 31.823077659208998 0 0 0 0 0.7614393726401688 2 0.3494850021680094 0 YYQQDA 3.3713 - 243 + NaN NaN 130241.8 NaN 10656 3205 13853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13865 62.121 NaN 5859000 35 0 773020 0.327 + 2917 DYSPYFKTI 9 113 567.2793230526404 1132.5440931720807 2 567.279541015625 MULTI HCD FTMS 0 0 0 13864 4605607.5 0.029397889988648358 39 -1.0279045104980469 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 176.4269993864032 3.292532597148328E-10 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 116.03 0 0 10.245 10.245 91.888 0 0 0 5.300084529637985 5.300084529637985 5.300084529637985 5.300084529637985 0 2.7302046884880937 2 2.615356566548286 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};DYSPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}T{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}TK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}T{I|L}K;{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}KT{I|L};{[CT]|[{M(Oxidation (M))|F}G]}EEY{M(Oxidation (M))|F}TK{I|L};[{I|L}T]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}YDT{I|L} 10.245;9.777;9.1075;8.3208;7.7796;7.1833;5.8554;5.0236;3.8861;3.0042 +;+;-;-;-;-;-;-;-;- + 3021 NaN NaN 569001.7 NaN 10657 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13866 62.126 NaN 1020900 35 0 122030 0.261 + 24135 RYAVVLNATW 10 100 596.8276016401649 1191.6406503471296 2 596.8275756835938 MULTI HCD FTMS 0 0 0 13864 743517.9375 0.6810649615873973 1 -0.029506683349609375 2 Unmodified _RYAVVLNATW_ ENSG00000099194|ENST00000370355|SCD 93.93812099017352 0.0007001511577108254 2 TA{I|L}V{I|L}NATW 9 3 87.873 0 0 7.3741 0 0 204.09104698856567 0 204.09104698856567 0 75.66814744856337 0 0 0 1 0 1.8807196863200843 0.7742275032520141 TA{I|L}V{I|L}NATW 7.3741 - 1320 + NaN NaN 264878.2 NaN 10658 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13867 62.13 NaN 644480 35 0 156270 0.261 + 23584 RPEDQPWLL 9 59 577.3033932219115 1152.592233510623 2 577.7869262695312 MULTI HCD FTMS 0 0 0 13864 47983.80078125 0.6014388976008157 7 -0.18664932250976562 3 Unmodified _RPEDQPWLL_ ENSG00000125651|ENST00000394456|GTF2F1 12.240655878213236 0.2545997876781172 2 GQ[WP]{I|L}{I|L} 6 4 20.737 0 0 1.7992 0 0 440.20967299629064 0 440.20967299629064 0 9.76789385964942 0 0 0 0.8252574989159953 0 0 0 GQ[WP]{I|L}{I|L} 1.7992 - 32 NaN NaN 199086.5 NaN 10659 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13868 62.133 NaN 334600 35 0 30061 0.261 + 24008 RWFDKSFTF 9 77 617.3060196500468 1232.5974863668935 2 617.30615234375 MULTI HCD FTMS 0 0 0 13864 266115.25 0.7416101192907384 4 -0.10139083862304688 4 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 57.24910588100465 0.021429789259086996 2 [WR]{M(Oxidation (M))|F}DKS{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 67.7 0 0 5.4924 5.4924 91.89 0 0 0 10.202264589233394 29.06173420760375 10.202264589233394 38.96636480286716 0 1.2302046884880937 0 1.25 0.3054621874040891 + + [WR]{M(Oxidation (M))|F}DKS{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}HES[H{I|L}]{M(Oxidation (M))|F}A[{M(Oxidation (M))|F}V];[WR]{M(Oxidation (M))|F}DK{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[MG]|[TS]};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}VD[RH]S{[ET]|[MV]};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}VD[RH]A[{M(Oxidation (M))|F}V];[W{I|L}][C(Carbamidomethyl (C))Q]RV{[QD]|[EN]|[WG]|[KD]|[RS]}E;[WR][MN]R[WR]E;[WR][MN][{I|L}T]PQ{[MG]|[TS]} 5.4924;2.3311;2.075;1.6744;1.4944;0.7006;0.49428;0.20095 +;-;-;-;-;-;-;- + 658 NaN NaN 154292.4 NaN 10660 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13869 62.136 NaN 543570 35 0 42938 0.261 + 13333 KYMDVQFDF 9 83 604.7681496085214 1207.5217462838427 2 604.7682495117188 MULTI HCD FTMS 0 0 0 13864 284252.9375 0.06385405562287837 65 -1.7066421508789062 5 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 47.7319792270244 0.034743597693959835 2 TD{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 9 4 55.041 0 0 4.5582 0 0 64.01214122555491 0 64.01214122555491 0 31.385671805833436 0 0 0 0 0 1.1307196863200843 0 TD{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4.5582 - 1763 + NaN NaN 170533.6 NaN 10661 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13870 62.139 NaN 892880 35 0 167920 0.264 + 2855 DYLYFRKLY 9 85 427.56050521902137 1279.6596862572642 3 427.5604248046875 MULTI HCD FTMS 0 0 0 13864 394785.1875 1 0 0 6 Unmodified _DYLYFRKLY_ REV__ENSG00000137673|ENST00000260227|MMP7;REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF;REV__ENST00000533366.5_1_11:102395628-102401431:-|nuORF 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}Y[WE]{I|L}Y 6 -1 30.305 0 0 2.3682 0 0 360.23567397285314 0 360.23567397285314 0 0.8679898841738698 0 0 0 0.7887254899964358 0 0.4247425010840047 0 {M(Oxidation (M))|F}Y[WE]{I|L}Y 2.3682 - 106 NaN NaN 222364.6 NaN 10662 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13871 62.143 NaN 530380 35 0 78908 0.261 -1 FLKCFCRFI 9 52 430.88817051521835 NaN 0 430.88818359375 PEAK HCD FTMS 0 0 0 13864 151469.5 0.5285787724601245 23 -0.651641845703125 7 2 Carbamidomethyl (C) _FLKC(Carbamidomethyl (C))FC(Carbamidomethyl (C))RFI_ nc|ENSG00000185499|P15941-10|MUC1;nc|ENSG00000185499|P15941-14|MUC1 2.498486711656943 0.28313952434011336 2 W 1 -1 3.9794 0 0 0.46285 0 0 122.37348204393238 548.2847994440061 670.6582814879386 0 0 0 0 0 0 0 0 0 W 0.46285 - 5 + NaN NaN 161512.2 NaN 10663 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13872 62.146 NaN 500260 35 0 127390 0.261 + 33606 YISESLPEYF 10 58 416.53293026902 1246.5769614072601 3 416.8768005371094 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YISESLPEYF_ ENSG00000116198|ENST00000378230|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104 6.1918466704503565 0.44252927588099017 2 {M(Oxidation (M))|F} 1 9 21.237 0 0 1.7036 0 0 1081.4980867508132 0 1081.4980867508132 0 15.55076269579011 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.7036 + + 7 + NaN NaN 184297.3 NaN 10664 3206 13864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13874 62.151 NaN 1471500 35 0 360200 0.327 + 35704 YYLDWIHHY 9 81 437.2047859599138 1308.5925284799414 3 437.2048645019531 MULTI HCD FTMS 0 0 0 13873 569971.0625 0.7671914286906474 1 -0.026264190673828125 1 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 60.07390631473393 0.0174780869009295 2 YY{I|L}DW{I|L}HHY 9 0 + 108.87 0 0 8.3194 8.3194 97.679 0 0 0 81.75373472475883 14.09256854528806 14.09256854528806 76.8001500618731 0 1.6549471895720984 2 0.8494850021680094 0 + + YY{I|L}DW{I|L}HHY;{NN|[MP]|[D{I|L}]|[EV]}W{I|L}HHYYY;{NN|[MP]|[D{I|L}]|[EV]}WHH{I|L}YYY;{NN|[MP]|[D{I|L}]|[EV]}W[WH]{[QV]|[N{I|L}]|[RA]|[KV]}YY;{NN|[MP]|[D{I|L}]|[EV]}W[WH]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Y;{NN|[MP]|[D{I|L}]|[EV]}W[WH]{[QD]|[EN]|[WG]|[KD]|[RS]}Y{M(Oxidation (M))|F};[WD]{I|L}{I|L}HHYYY;[WD]{I|L}HH{I|L}YYY;[WD]{I|L}[WH]{[QV]|[N{I|L}]|[RA]|[KV]}YY;{NN|[MP]|[D{I|L}]|[EV]}W{I|L}HH{[QD]|[EN]|[WG]|[KD]|[RS]}[MD] 8.3194;2.4505;2.4505;2.0723;1.9377;1.3427;1.101;1.101;0.72283;0.7131 +;-;-;-;-;-;-;-;-;- + 855 + NaN NaN 316231.2 NaN 10665 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13875 62.155 NaN 1538300 35 0 188740 0.261 + 34988 YSTKPRLSSW 10 102 612.8222632917768 1223.6299736503536 2 612.8062744140625 MULTI HCD FTMS 0 0 0 13873 146245.03125 0.32276815651532076 3 -0.0718841552734375 2 Unmodified _YSTKPRLSSW_ SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|63|3|anti-sense 18.1463463914782 0.3413772152514074 2 [Y{I|L}]S[NP]GTQSY 10 7 66.688 0 0 5.45 0 0 0 110.09319641076891 110.09319641076891 30.136532636392218 0 0 0 0 0 2 1.4291746928241125 0 [Y{I|L}]S[NP]GTQSY 5.45 - 4008 NaN NaN 331685.9 NaN 10666 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13876 62.159 NaN 976450 35 0 223470 0.264 + 4270 EVILIDPFHK 10 43 404.23251848002667 1209.67572604028 3 404.2325439453125 MULTI HCD FTMS 0 0 0 13873 396568.21875 0.31032629226416863 5 -0.1242828369140625 3 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 12.227587767072771 0.39673928642462597 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 6 4 43.174 0 0 3.5691 0 0 0 524.2629076638034 524.2629076638034 28.481362441963327 0 0 0 0 0.3252574989159953 1.3010299956639813 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 3.5691 + + 82 + NaN NaN 242781 NaN 10667 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13877 62.162 NaN 332110 35 0 27429 0.261 + 2846 DYLKRFYLY 9 71 640.8375989063468 1279.6606448794935 2 641.3389282226562 MULTI HCD FTMS 0 0 0 13873 176491.671875 0.7622500393931 1 -0.026264190673828125 4 Unmodified _DYLKRFYLY_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 47.594388314883695 0.03493607795751234 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}KR{M(Oxidation (M))|F}Y{I|L}Y 9 0 + 67.515 0 0 5.276 5.276 88.211 0 0 0 6.329628067253168 46.04303111733195 6.329628067253168 9.622665795563421 0 1.742992819099939 2 0.3252574989159953 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}KR{M(Oxidation (M))|F}Y{I|L}Y;DY{I|L}{[NV]|[RG]}RK{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[Y{M(Oxidation (M))|F}][RK]{I|L}DY{I|L}Y;[Y{M(Oxidation (M))|F}][RK]{I|L}{I|L}YDY;[Y{M(Oxidation (M))|F}][RK]{I|L}YD{I|L}Y;[Y{M(Oxidation (M))|F}][RK]{I|L}Y{I|L}DY 5.276;4.5241;2.1537;1.9782;1.9184;1.5077 +;-;-;-;-;- + 139 NaN NaN 140026.1 NaN 10668 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13878 62.166 NaN 526720 35 0 36638 0.262 + 30808 VPVKDSWLL 9 102 528.8080086049467 1055.6014642766934 2 528.8081665039062 MULTI HCD FTMS 0 0 0 13873 242361.125 0.8003739970887257 -2 0.06571197509765625 5 Unmodified _VPVKDSWLL_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 43.77239144664712 0.04802738721622131 2 [VP]V[SG]W[VS]{I|L}{I|L} 10 4 + 41.048 0 0 3.8886 3.8886 86.556 0 0 0 5.316206019771528 27.94917177197476 5.316206019771528 10.72051538364164 0 1.274227503252014 1.3010299956639813 0.6421590589602533 0 [VP]V[SG]W[VS]{I|L}{I|L};[VP]YV[NG]VPV{I|L};[VP]VY[NG]VPV{I|L};[VP]V[SG]W{[TV]|[{I|L}S]}V{I|L};[YV]PV[NG]VPV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TP][NG]VPV{I|L} 3.8886;2.873;2.8234;2.3117;0.98505;0.66266 -;-;-;-;-;- 537 NaN NaN 178511.8 NaN 10669 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13879 62.169 NaN 297680 35 0 41768 0.262 -1 YDSCCVIDKIT 11 61 439.5337764924605 1315.5795000775815 3 439.5337219238281 MULTI HCD FTMS 0 0 0 13873 111377.9765625 0.04241823627402077 45 -1.1350288391113281 6 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 14.837902256254086 0.32779928292324945 2 {[YD]|[{M(Oxidation (M))|F}M]}SP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F} 7 -1 55.15 0 0 4.1921 0 0 0 357.2130526178344 357.2130526178344 48.16016017094704 0 0 0 0 1.7302046884880937 2 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}SP[WC(Carbamidomethyl (C))]{M(Oxidation (M))|F} 4.1921 - 59 + NaN NaN 139114 NaN 10670 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13880 62.172 NaN 117430 35 0 17089 0.261 -1 PLCNMPVL 8 44 472.2401551219093 942.4657573106186 2 472.2402038574219 MULTI HCD FTMS 0 0 0 13873 73739.671875 0.707798413874552 1 -0.026264190673828125 7 Carbamidomethyl (C) _PLC(Carbamidomethyl (C))NMPVL_ ENSG00000101236|ENST00000358395|RNF24;nc|ENSG00000101236|Q9Y225-2|RNF24 14.581692164780916 0.48650662947107914 2 V{I|L} 2 -1 25.969 0 0 2.7554 0 0 712.3007679669937 0 712.3007679669937 0 10.484550065040281 0 0 0 0.5 0 0 0 V{I|L} 2.7554 + + 7 NaN NaN 105679 NaN 10671 3207 13873 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13882 62.177 NaN 671260 35 0 156590 0.327 + 11866 KFDDGAVFL 9 71 506.2609215000308 1010.5072900668616 2 506.2609558105469 MULTI HCD FTMS 0 0 0 13881 357058.71875 0.6196902058514865 3 -0.07510757446289062 1 Unmodified _KFDDGAVFL_ ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A 27.628801355627647 0.12213550946336599 2 V{M(Oxidation (M))|F}{I|L} 3 6 36.198 0 0 3.5822 0 0 633.2760053199696 0 633.2760053199696 0 13.010299956639813 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F}{I|L} 3.5822 + + 110 NaN NaN 187432.4 NaN 10672 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13883 62.182 NaN 723270 35 0 61280 0.261 + 607 APFKFDMEL 9 83 557.2680039090901 1112.5214548849801 2 557.2678833007812 MULTI HCD FTMS 0 0 0 13881 356405.25 0.428981201204897 18 -0.5107078552246094 2 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 83.42873516780209 0.004742894019233849 2 [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 77.089 0 0 6.9292 6.9292 92.096 0 0 0 5.6424927368725974 49.286662482156345 5.6424927368725974 14.018637558036673 0 2.1989700043360187 0 0.3494850021680094 0 + + [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{M(Oxidation (M))|F}E][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}KEPA;{[YD]|[{M(Oxidation (M))|F}M]}RRD{M(Oxidation (M))|F}NK;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}PA{I|L};[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PA{I|L};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}K{M(Oxidation (M))|F}PA{I|L};[{M(Oxidation (M))|F}E][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}[SG]PA{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F}PA{I|L} 6.9292;5.6691;4.9926;2.8708;2.5571;2.4254;2.2671;2.2671;1.9945;1.8683 +;-;-;-;-;-;-;-;-;- + 879 NaN NaN 197435.4 NaN 10673 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13884 62.185 NaN 618630 35 0 44897 0.261 + 6026 FPDRIMNTF 9 93 570.7786984605716 1139.5428439879431 2 570.7786254882812 MULTI HCD FTMS 0 0 0 13881 237511.3125 0.7616634940550486 -1 0.026264190673828125 3 Unmodified _FPDRIMNTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 128.57297698046145 0.0006915168155602875 2 {M(Oxidation (M))|F}PDR{I|L}MNT{M(Oxidation (M))|F} 9 0 + 87.186 0 0 7.6509 7.6509 87.134 0 0 0 62.99471895720985 16.478174818886373 16.478174818886373 0.5900442645264263 0 2.9049471895720984 0 2.06295299324845 0.6694451763165201 + + {M(Oxidation (M))|F}PDR{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}MNT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRP{M(Oxidation (M))|F}NT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}MGGT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDR{I|L}MGGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPN{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRP{M(Oxidation (M))|F}GGT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRPGG{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DR{I|L}{[QS]|[NT]}M{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DRP[WP]PE 7.6509;7.5991;6.9611;6.7911;6.5088;6.3902;6.153;5.5822;4.4627;3.4574 +;+;-;-;-;-;-;-;-;- + 998 + NaN NaN 200762.8 NaN 10674 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13885 62.189 NaN 466390 35 0 112450 0.264 + 24010 RWFDKSFTF 9 75 411.87316990204965 1232.597680306349 3 411.87322998046875 MULTI HCD FTMS 0 0 0 13881 138128.375 0.32296768779929497 6 -0.16370773315429688 4 Unmodified _RWFDKSFTF_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 31.26834338654808 0.10542797264966089 2 {M(Oxidation (M))|F}D[Q{I|L}]T{M(Oxidation (M))|F} 6 5 35.138 0 0 2.8507 0 0 463.24336440254064 0 463.24336440254064 0 24.69273760456403 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {M(Oxidation (M))|F}D[Q{I|L}]T{M(Oxidation (M))|F} 2.8507 - 46 NaN NaN 152901.8 NaN 10675 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13886 62.192 NaN 783410 35 0 101480 0.261 + 11040 IYFEYSHAF 9 90 588.7713555955214 1175.5281582578427 2 588.7555541992188 MULTI HCD FTMS 0 0 0 13881 103882.171875 0.46920278859978043 -1 0.026264190673828125 5 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 81.61307344734483 0.005330412723537057 2 {I|L}Y{M(Oxidation (M))|F}EYSH{[MS]|[{M(Oxidation (M))|F}A]} 9 0 + 79.783 0 0 6.787 6.787 93.969 0 0 0 49.67441377540427 2.632192780232785 2.632192780232785 36.99092531119419 0 1.8441876774005248 1.5228787452803376 0.6549471895720985 0 + + {I|L}Y{M(Oxidation (M))|F}EYSH{[MS]|[{M(Oxidation (M))|F}A]};{I|L}Y{M(Oxidation (M))|F}{[CP]|[EA]}[C(Carbamidomethyl (C))R]{[MS]|[{M(Oxidation (M))|F}A]};{I|L}Y{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}SH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{I|L}Y{M(Oxidation (M))|F}[HT]{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]};{I|L}Y[QA]W{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]};[HV][C(Carbamidomethyl (C))R]YSH{[MS]|[{M(Oxidation (M))|F}A]};{[QD]|[EN]|[WG]|[KD]|[RS]}MN{[QV]|[N{I|L}]|[RA]|[KV]}SH{[MS]|[{M(Oxidation (M))|F}A]};M{I|L}{M(Oxidation (M))|F}[MT][C(Carbamidomethyl (C))R]{[MS]|[{M(Oxidation (M))|F}A]};[Y{I|L}][EP]{[QG]|[NA]}NM[QP];M{I|L}{M(Oxidation (M))|F}[RN]{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]} 6.787;3.6402;3.6312;3.471;2.4847;1.3749;1.2776;1.2293;1.1371;1.06 +;-;-;-;-;-;-;-;-;- + 1323 + NaN NaN 211805.3 NaN 10676 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13887 62.195 NaN 329820 35 0 33947 0.261 -1 0 72 593.1569367465011 592.149660279901 1 593.1576538085938 MULTI HCD FTMS 0 0 0 13881 71535.265625 0.4003855834299697 26 -0.7257423400878906 6 NaN NaN 2 D 1 -1 2.7642 0 0 0.46681 0 0 144.92530832853225 329.1737154596313 474.09902378816355 0 0 0 0 0 0 0 0 0 D 0.46681 - 11 + NaN NaN 148315.1 NaN 10677 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13888 62.199 NaN 281900 35 0 15789 0.261 + 27465 SYVVAMETF 9 72 531.7442774086093 1061.4740018840184 2 531.7442016601562 MULTI HCD FTMS 0 0 0 13881 63633.91796875 0.57875598827956 -7 0.2156982421875 7 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 78.14939416004806 0.006451203201226903 2 {[{M(Oxidation (M))|F}C]|[YS]}VV{[MS]|[{M(Oxidation (M))|F}A]}ET{M(Oxidation (M))|F} 9 0 + 48.35 0 0 4.555 4.555 89.109 0 0 0 5.2600740863512385 33.74606867853579 5.2600740863512385 19.515449934959715 0 2.1989700043360187 0 0.6237125054200234 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VV{[MS]|[{M(Oxidation (M))|F}A]}ET{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VV{[CP]|[EA]}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}MV[{M(Oxidation (M))|F}V]VC{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}MVVV{M(Oxidation (M))|F}C{M(Oxidation (M))|F} 4.555;2.7165;1.2095;1.1349 +;-;-;- + 338 NaN NaN 127220.9 NaN 10678 3208 13881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13890 62.203 NaN 1100800 35 0 91468 0.327 + 27108 SYMGHFDLL 9 103 549.7498597197784 1097.4851665063568 2 549.7503051757812 MULTI HCD FTMS 0 0 0 13889 479328.59375 0.05692963116241638 66 -1.7392539978027344 1 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 68.08070601005525 0.009709267492204555 2 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 38.466 0 0 3.5049 0 0 591.2126199425785 0 591.2126199425785 0 19.57687041368656 0 0 0 0.6694451763165201 0 0.7614393726401688 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.5049 + + 962 NaN NaN 269221.4 NaN 10679 3209 13889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13891 62.208 NaN 837240 35 0 176740 0.261 + -1 FFSFCTMW 8 82 563.2305819659182 1124.4466109986363 2 563.230712890625 MULTI HCD FTMS 0 0 0 13889 757455.0625 1 0 0 2 Carbamidomethyl (C) _FFSFC(Carbamidomethyl (C))TMW_ REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|125|2|anti-sense 20.871210003555333 0.44023077629866025 2 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 75.878 0 0 6.748 0 0 315.08604628730626 0 315.08604628730626 0 50.82850421621579 0 0 0 2.4049471895720984 0 0.6747425010840047 0 S{I|L}EAD{M(Oxidation (M))|F}E 6.748 - 455 NaN NaN 213742.9 NaN 10680 3209 13889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13892 62.211 NaN 652110 35 0 87155 0.261 + 20366 NYTDIKDYL 9 92 572.7797595087668 1143.5449660843335 2 572.7800903320312 MULTI HCD FTMS 0 0 0 13889 495395.59375 1 0 0 3 Unmodified _NYTDIKDYL_ ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 100.7086487251713 0.004245359191255521 2 [YN]TD{I|L}KDY{I|L} 9 0 + 103.7 0 0 9.0682 9.0682 96.938 0 0 0 26.949911167586478 16.478174818886373 16.478174818886373 26.949911167586478 0 2.2302046884880937 1.6989700043360187 1.0356668758921828 1.2447026752325154 + + [YN]TD{I|L}KDY{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSD{I|L}KDY{I|L};[YQ]SD{I|L}KDY{I|L};[YT]ND{I|L}KDY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}SSD{I|L}KDY{I|L};[YT]GGD{I|L}KDY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QS]|[NT]}{I|L}KDY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[K{I|L}]{[QS]|[NT]}DY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[K{I|L}]{[ES]|[DT]|[{I|L}C]}NY{I|L} 9.0682;6.7115;6.2223;5.9017;5.5008;4.5934;4.1242;0.64245;0.5732 +;-;-;-;-;-;-;-;- + 1291 NaN NaN 203070 NaN 10681 3209 13889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13893 62.215 NaN 385670 35 0 85093 0.262 + 3227 EDLIAYLK 8 52 482.77117332080724 963.5277937084145 2 482.7710876464844 MULTI HCD FTMS 0 0 0 13889 155280.203125 0.4317065067531812 -3 0.08190155029296875 4 Unmodified _EDLIAYLK_ CON__P62894 34.10243960390752 0.30669083636501265 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY[K{I|L}] 8 0 + 37.44 0 0 3.8857 3.8857 89.59 0 0 0 10.986446888048107 6.9897000433601875 6.9897000433601875 37.44009708316895 0 0.805462187404089 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY[K{I|L}] 3.8857 + + 53 + NaN NaN 171825.4 NaN 10682 3209 13889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13894 62.218 NaN 200990 35 0 18108 0.261 + 35781 YYMKDLPTSF 10 56 632.7990787446994 1263.5836045561987 2 633.3005981445312 MULTI HCD FTMS 0 0 0 13889 37290.94921875 0.6444707263342826 -3 0.08190155029296875 5 Unmodified _YYMKDLPTSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 65.47368725323818 0.022948616544343086 2 YYM{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 10 0 + 64.816 0 0 5.1295 5.1295 92.082 0 0 0 8.513626146703416 8.513626146703416 8.513626146703416 64.8158267586595 0 2.094187677400525 2 0.5 0 + + YYM{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}[TP]S{M(Oxidation (M))|F} 5.1295 + + 64 NaN NaN 125234.8 NaN 10683 3209 13889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13896 62.223 NaN 7455300 35 0 1146200 0.327 + 5182 FFDAELSQM 9 95 552.2393087556661 1102.4640645781321 2 552.2398071289062 MULTI HCD FTMS 0 0 0 13895 4058213.75 0.7325047002015094 1 -0.02948760986328125 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.581 2.8432 0.96662 8.9419 8.9419 68.669 0 0 0 0 57.76518691448112 0 0 0 3.1989700043360187 0 1.7416440611282624 0.9489700043360187 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9419 + + 4016 + NaN NaN 607835 NaN 10684 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13897 62.227 NaN 339960 35 0 33617 0.261 + 17045 LYKELGEYF 9 67 581.2942099727629 1160.5738670123258 2 581.2940063476562 MULTI HCD FTMS 0 0 0 13895 81033.2109375 0.46084883528740594 -2 0.045619964599609375 2 Unmodified _LYKELGEYF_ ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1 55.50274090549119 0.023872834264864425 2 {I|L}YKE{I|L}{[DA]|[EG]}Y{M(Oxidation (M))|F} 9 0 + 83.963 0 0 7.2346 7.2346 94.865 0 0 0 64.49864366769575 14.973024840566467 14.973024840566467 38.35007425345765 0 2.1989700043360187 2 0.2614393726401688 0.3494850021680094 + + {I|L}YKE{I|L}{[DA]|[EG]}Y{M(Oxidation (M))|F};{I|L}YK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KT]Y{M(Oxidation (M))|F};[RH][Y{M(Oxidation (M))|F}][KT]Y{M(Oxidation (M))|F} 7.2346;3.9302;1.646;1.1757 +;-;-;- + 104 + NaN NaN 148237.6 NaN 10685 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13898 62.231 NaN 266620 35 0 53158 0.264 + 16877 LYFDRKYLF 9 46 422.22907790505434 1263.665404315363 3 422.2289733886719 MULTI HCD FTMS 0 0 0 13895 38438.56640625 0.23930785624922968 4 -0.1180877685546875 3 Unmodified _LYFDRKYLF_ ENSG00000186417|ENST00000335449|GLDN;nc|ENSG00000186417|Q6ZMI3-2|GLDN 14.838274106304384 0.23215694253501695 2 {I|L}Y 2 7 45.217 0 0 3.5782 0 0 0 984.4940805341582 984.4940805341582 22.284700126913393 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.5782 + + 11 + NaN NaN 136640.5 NaN 10686 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13899 62.234 NaN 521400 35 0 81404 0.261 + -1 RQCSLSKFYFF 11 74 494.9113819312456 1481.7123163939368 3 494.91168212890625 MULTI HCD FTMS 0 0 0 13895 74199.5390625 0.5992469112496284 1 -0.02948760986328125 4 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))SLSKFYFF_ REV__ENSG00000064989|ENST00000392370|CALCRL 6.623454094837244 0.3898724468670146 2 [NP]V[KQ]TC{M(Oxidation (M))|F}[{I|L}A]SQ{M(Oxidation (M))|F} 13 -1 [NP]V[KQ]TC + + 36.203 0.021527 0.0027943 2.4433 2.4433 59.872 0 0 0 0 6.42667503568731 0 0 0 1 0 0 0.3807196863200844 [NP]V[KQ]TC{M(Oxidation (M))|F}[{I|L}A]SQ{M(Oxidation (M))|F} 2.4433 - 112 + NaN NaN 179776.7 NaN 10687 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13900 62.238 NaN 281680 35 0 38300 0.261 + 6380 FPGELIKNL 9 68 515.800393316049 1029.586233698898 2 515.80029296875 MULTI HCD FTMS 0 0 0 13895 19920.21875 0.029238947148926636 -21 0.4604034423828125 5 Unmodified _FPGELIKNL_ REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF 13.042465956692817 0.2476723265019929 2 PE 2 -1 22.959 0 0 2.2299 0 0 785.4686672295012 0 785.4686672295012 0 4.5424250943932485 0 0 0 0.5 0 0 0 PE 2.2299 - 23 NaN NaN 136097.3 NaN 10688 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13901 62.241 NaN 173760 35 0 20218 0.261 + 18180 MPDLDLHL 8 60 485.23902124256807 NaN 0 485.2393798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 44.40701690623563 0.27848148945719364 2 PD{I|L}D{I|L} 5 3 20.331 0 0 2.0994 0 0 147.0333270536924 265.12961755924067 412.1629446129331 0 0 0 0 0 0.8807196863200843 0 0 0 + PD{I|L}D{I|L} 2.0994 + + 21 + NaN NaN 124172.2 NaN 10689 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13902 62.244 NaN 160160 35 0 9426.1 0.261 -1 LKEKMAMPSM 10 49 599.2877212960617 NaN 0 599.2880859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _LKEKM(Oxidation (M))AMPSM(Oxidation (M))_ ENST00000389805.8_1_5:179264885-179265023:+|nuORF 5.731851221503515 0.33527861879838866 2 P 1 -1 6.9897 0 0 0.58415 0 0 847.4305707977126 249.0541933649047 1096.4847641626172 0 0 0 0 0 0 0 0 0 P 0.58415 + + 10 + NaN NaN 115279.4 NaN 10690 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13903 62.248 NaN 120820 35 0 14074 0.262 + 32982 YARETLLL 8 50 489.78477679635125 NaN 0 489.7867431640625 PEAK HCD FTMS 0 0 0 13895 20296.54296875 0.2418433324806308 -10 0.27093505859375 8 Unmodified _YARETLLL_ REV__ENSG00000139132|ENST00000534526|FGD4;REV__nc|ENSG00000139132|Q96M96|FGD4 7.289230182591677 0.38822285293237185 2 {I|L} 1 -1 11.99 0 0 1.2265 0 0 131.09558923261346 730.3523653619749 861.4479545945883 0 0 0 0 0 0.5 0 0 0 {I|L} 1.2265 + + 1 + NaN NaN 105990 NaN 10691 3210 13895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13905 62.252 NaN 406660 35 0 53581 0.327 + 11041 IYFEYSHAF 9 80 588.7713555955214 1175.5281582578427 2 588.7720336914062 MULTI HCD FTMS 0 0 0 13904 91514.5703125 0.413342258956652 2 -0.0557708740234375 1 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 74.92900055777586 0.007493270374442853 2 {I|L}Y{M(Oxidation (M))|F}EYSHA{M(Oxidation (M))|F} 9 0 + 74.4 0 0 6.3291 6.3291 91.388 0 0 0 51.999168443024416 4.911852558481414 4.911852558481414 15.735228231192409 0 2.3288245576287263 1.6989700043360187 0 0 + + {I|L}Y{M(Oxidation (M))|F}EYSHA{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EYSHA{M(Oxidation (M))|F};{I|L}Y{M(Oxidation (M))|F}[HT]{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F};{I|L}Y{M(Oxidation (M))|F}{[CP]|[EA]}[C(Carbamidomethyl (C))R]A{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EYSHA{M(Oxidation (M))|F};{I|L}Y{M(Oxidation (M))|F}[HD][YT]A{M(Oxidation (M))|F};MNKSY{[CA]|SS}AAA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][Y{I|L}]YSHA{M(Oxidation (M))|F};[HV][C(Carbamidomethyl (C))R]YSHA{M(Oxidation (M))|F};MNKS{[QS]|[NT]}[YT]A{M(Oxidation (M))|F} 6.3291;4.9905;3.4949;3.3875;3.1199;2.5884;1.6883;1.6756;1.1323;0.84203 +;+;-;-;-;-;-;-;-;- + 717 + NaN NaN 147329.6 NaN 10692 3211 13904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13906 62.257 NaN 419410 35 0 39224 0.261 + 13334 KYMDVQFDF 9 61 604.7681496085214 1207.5217462838427 2 604.7679443359375 MULTI HCD FTMS 0 0 0 13904 250752.296875 0.05632853349922112 70 -1.8671455383300781 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 45.739877483867886 0.03899552410870734 2 T{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 4 64.684 0 0 5.3568 0 0 179.0621052472672 0 179.0621052472672 0 49.50428786036832 0 0 0 0 0 1.3193415193665468 0 T{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.3568 - 544 NaN NaN 153028 NaN 10693 3211 13904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13907 62.26 NaN 366130 35 0 120350 0.264 -1 ACGNDDCR 8 46 455.6604219998585 909.306291066517 2 455.66046142578125 MULTI HCD FTMS 0 0 0 13904 81134.8203125 0.28438591031799393 2 -0.0557708740234375 3 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.5392561982033289 2 HR 2 -1 15.969 0 0 1.7562 0 0 98.99667300186702 514.127214177649 613.123887179516 0 0 0 0 0 0.5 0 0 0 HR 1.7562 - 15 + NaN NaN 142316.5 NaN 10694 3211 13904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13908 62.264 NaN 271950 35 0 11159 0.261 + 2521 DSNLKIESME 10 69 583.2740892778603 1164.5336256225205 2 583.2742309570312 MULTI HCD FTMS 0 0 0 13904 139371.75 0.051938061555537894 35 -0.909881591796875 4 Unmodified _DSNLKIESME_ REV__nc|ENSG00000069869|P46934-2|NEDD4;REV__nc|ENSG00000069869|P46934-3|NEDD4;REV__nc|ENSG00000069869|P46934|NEDD4 20.41453444215458 0.3201613495159799 2 NSEY{M(Oxidation (M))|F}KT{I|L} 8 -1 52.947 0 0 4.5466 0 0 164.04779906177674 0 164.04779906177674 0 38.72515503637926 0 0 0 2.0356668758921828 0 0.6382104921644451 0 NSEY{M(Oxidation (M))|F}KT{I|L} 4.5466 - 238 + NaN NaN 138634 NaN 10695 3211 13904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13909 62.267 NaN 285670 35 0 33625 0.261 + -1 PLMTGVADVI 10 57 516.2756778898143 1030.5368028464286 2 516.276123046875 MULTI HCD FTMS 0 0 0 13904 48472.56640625 0.22447684984354066 9 -0.2651023864746094 5 Oxidation (M) _PLM(Oxidation (M))TGVADVI_ REV__ENSG00000128965|ENST00000617768|CHAC1;REV__nc|ENSG00000128965|Q9BUX1-2|CHAC1 20.453626601364224 0.3197956946484955 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 -1 23.557 0 0 2.2858 0 0 0 668.3668559072286 668.3668559072286 2.275071725447404 0 0 0 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 2.2858 - 94 NaN NaN 133924.9 NaN 10696 3211 13904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13910 62.27 NaN 254400 35 0 31792 0.261 -1 PYMDSPQSIGF 11 55 629.2761970388243 1256.5378411444485 2 629.2761840820312 MULTI HCD FTMS 0 0 0 13904 89620.3125 0.7030487263010483 -2 0.048976898193359375 6 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 24.881564428377168 0.24028852512227317 2 S{I|L}G{M(Oxidation (M))|F} 4 -1 44.157 0 0 3.5142 0 0 834.3211282689955 0 834.3211282689955 0 32.29003276963995 0 0 0 1 0 1 0 S{I|L}G{M(Oxidation (M))|F} 3.5142 + + 19 NaN NaN 132021.8 NaN 10697 3211 13904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13912 62.275 NaN 6857900 35 0 862120 0.327 + 10971 IYDSVKVYF 9 118 567.296899611243 1132.579246289286 2 567.2794799804688 MULTI HCD FTMS 0 0 0 13911 240758.15625 0.17495919573818924 -3 0.07188796997070312 1 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 55.50274090549119 0.023872834264864425 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT 8 6 70.359 0 0 6.2123 0 0 0 128.10724630713244 128.10724630713244 -3.775385454324308 0 -3.775385454324308 0 0 0 2 2.5233623702246373 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT 6.2123 - 6153 NaN NaN 696744.8 NaN 10698 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13913 62.28 NaN 544450 35 0 124040 0.261 + 23585 RPEDQPWLL 9 59 577.3033932219115 1152.592233510623 2 577.7869262695312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RPEDQPWLL_ ENSG00000125651|ENST00000394456|GTF2F1 6.723162845929126 0.3000504726104499 2 N 1 9 13.852 0 0 1.2018 0 0 130.1292522433253 905.3941134088499 1035.5233656521752 0 0 0 0 0 0.5 0 0 0.4247425010840047 N 1.2018 - 18 + NaN NaN 170785.9 NaN 10699 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13914 62.283 NaN 1058800 35 0 144410 0.261 + 20023 NYIGLINRI 9 79 538.3163769983624 1074.6182010635248 2 538.3170776367188 MULTI HCD FTMS 0 0 0 13911 459115.5625 0.09013752279620638 -5 0.1242828369140625 3 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 118.89474601620944 0.0014903111061077812 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 106.4 0 0 9.9011 9.9011 94.094 0 0 0 30.84244409179611 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6549471895720984 1.6989700043360187 0 2.028659694992122 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}{I|L}NR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}GGR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}{I|L}N[VG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}{I|L}GGR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RG{I|L}{I|L}N[VG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[TP]{I|L}NR{I|L} 9.9011;9.0442;7.9919;5.2092;4.9291;4.3564;4.0763;4.0763;3.9641;3.6975 +;-;-;-;-;-;-;-;-;- + 599 NaN NaN 246452.1 NaN 10700 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13915 62.287 NaN 1094300 35 0 124040 0.261 + 28995 TYDPWIGKL 9 102 546.7901915008661 NaN 0 546.8009643554688 PEAK HCD FTMS 0 0 0 13911 62722.65625 0.9557757438318625 -1 0.02291107177734375 4 Unmodified _TYDPWIGKL_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 45.69961567697781 0.05999643521280087 2 K{I|L}ANE{I|L} 6 8 41.525 0 0 3.8042 0 0 149.08590237781704 271.07209192447505 420.1579943022921 0 0 0 0 0 0 0 0.5501648626366046 0.9392404878284264 K{I|L}ANE{I|L} 3.8042 - 558 + NaN NaN 261505 NaN 10701 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13916 62.29 NaN 216300 35 0 25373 0.261 + -1 NYAACKYSGKD 11 60 638.7851171664643 1275.5556813997284 2 638.7849731445312 MULTI HCD FTMS 0 0 0 13911 36631.13671875 0.29960428571939757 -3 0.07188796997070312 5 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 20.41453444215458 0.279209903849948 2 [YN]A[HM][RH]A[YN] 10 -1 + 40.647 0 0 3.1866 3.1866 89.124 0 0 0 4.704999916446795 33.172874778693355 4.704999916446795 40.647124887093824 0 0.9247425010840047 1.6989700043360187 0 0.3494850021680094 [YN]A[HM][RH]A[YN] 3.1866 - 50 NaN NaN 135705.5 NaN 10702 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13917 62.293 NaN 438980 35 0 99720 0.263 + 35957 YYVPRGFWKQF 11 55 497.5906135207256 1489.7500111623767 3 497.5909118652344 MULTI HCD FTMS 0 0 0 13911 77457.59375 0.33482628739257575 -3 0.07188796997070312 6 Unmodified _YYVPRGFWKQF_ ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;nc|ENSG00000114374|O00507-2|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 27.088373467376528 0.22106052561220446 2 YYV{[HG]|PP}V 6 7 57.664 0 0 3.8707 0 0 0 768.3936861627561 768.3936861627561 35.67410004652736 0 0 0 0 0.9247425010840047 2 0 0 YYV{[HG]|PP}V 3.8707 - 25 + NaN NaN 166737.3 NaN 10703 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13918 62.297 NaN 224180 35 0 23857 0.261 + -1 MRNLIVATI 9 65 523.8029668286931 1045.5913807241861 2 523.8032836914062 MULTI HCD FTMS 0 0 0 13911 75913.3046875 0.7253680699298528 3 -0.08860397338867188 7 Oxidation (M) _M(Oxidation (M))RNLIVATI_ REV__ENSG00000113073|ENST00000506757|SLC4A9;REV__nc|ENSG00000113073|Q96Q91-2|SLC4A9;REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9;REV__nc|ENSG00000113073|Q96Q91|SLC4A9 19.256988751693697 0.19398022840297344 2 T{I|L} 2 -1 25.969 0 0 2.4837 0 0 813.4491308297405 0 813.4491308297405 0 11.989700043360187 0 0 0 0.5 0 0 0 T{I|L} 2.4837 + + 41 NaN NaN 121527 NaN 10704 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13919 62.3 NaN 223820 35 0 37950 0.262 + 17585 LYVVHPYVQF 10 51 422.22907790505434 1263.665404315363 3 422.5632629394531 MULTI HCD FTMS 0 0 0 13911 30237.8828125 0.24983233482995879 5 -0.14421844482421875 8 Unmodified _LYVVHPYVQF_ ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 10.823927491677226 0.4098686510432541 2 {I|L}Y 2 8 45.217 0 0 3.5782 0 0 0 984.493925774429 984.493925774429 20.154856465551987 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.5782 + + 18 + NaN NaN 124141.6 NaN 10705 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13920 62.303 NaN 212100 35 0 14789 0.261 + -1 YEGVVQGLGDC 11 56 598.7673900300584 1195.5202271269168 2 599.2875366210938 MULTI HCD FTMS 0 0 0 13911 12192.318359375 0.36192847177192305 -2 0.052398681640625 9 Carbamidomethyl (C) _YEGVVQGLGDC(Carbamidomethyl (C))_ REV__ENSG00000169871|ENST00000306085|TRIM56 5.296884461304476 0.39569033063702824 2 YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 -1 9.0411 0 0 0.75625 0 0 683.283983299025 0 683.283983299025 0 3.556518697048718 0 0 0 0 0 0 0 YP{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 0.75625 - 57 NaN NaN 124875.3 NaN 10706 3212 13911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13922 62.308 NaN 1722300 35 0 230780 0.327 -1 SLYVPVMITW 10 100 612.8212385087053 1223.6279240842105 2 612.8062133789062 MULTI HCD FTMS 0 0 0 13921 89208.6640625 1 0 0 1 Oxidation (M) _SLYVPVM(Oxidation (M))ITW_ ENSG00000242265|ENST00000612748|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10 13.90604991867851 0.3810395177745597 2 [Y{I|L}]S[NP]GTQSY 10 -1 73.237 0 0 5.9852 0 0 0 110.09288379998421 110.09288379998421 36.68453106763742 0 0 0 0 0 2 2.0841218823962113 0 [Y{I|L}]S[NP]GTQSY 5.9852 - 4444 NaN NaN 350431.3 NaN 10707 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13923 62.313 NaN 529000 35 0 45847 0.261 + 13335 KYMDVQFDF 9 72 604.7681496085214 1207.5217462838427 2 604.768310546875 MULTI HCD FTMS 0 0 0 13921 296825.09375 0.06667824161563356 72 -1.9226722717285156 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 2 DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 60.979 0 0 5.05 0 0 438.19368178535314 0 438.19368178535314 0 49.28456906244314 0 0 0 1.805462187404089 0 0 0.6549471895720984 + DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.05 + + 692 NaN NaN 178120.1 NaN 10708 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13924 62.316 NaN 753910 35 0 165670 0.264 + 4271 EVILIDPFHK 10 49 404.23251848002667 1209.67572604028 3 404.2325134277344 MULTI HCD FTMS 0 0 0 13921 164336.125 0.12859785011783914 11 -0.31743621826171875 3 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 8.751783647060863 0.42897912249790143 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 6 4 30.164 0 0 2.4935 0 0 0 524.2630063793919 524.2630063793919 15.471062485323513 0 0 0 0 0.3252574989159953 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L}D 2.4935 + + 62 + NaN NaN 196623.4 NaN 10709 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13925 62.32 NaN 1011000 35 0 43164 0.261 + 24136 RYAVVLNATW 10 98 596.8276016401649 1191.6406503471296 2 597.3192138671875 MULTI HCD FTMS 0 0 0 13921 46972.171875 0.06281244617139854 11 -0.31743621826171875 4 Unmodified _RYAVVLNATW_ ENSG00000099194|ENST00000370355|SCD 59.368380827593164 0.04371880213842136 2 {I|L}[MD]V{I|L}NATW 9 4 53.934 0 0 4.5261 0 0 130.1082586560836 0 130.1082586560836 0 42.72289319904552 0 0 0 2.1989700043360187 0 1.089136830878453 0.9247425010840047 {I|L}[MD]V{I|L}NATW 4.5261 - 2739 + NaN NaN 245655.3 NaN 10710 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13926 62.323 NaN 411790 35 0 27028 0.262 + 30809 VPVKDSWLL 9 84 528.8080086049467 1055.6014642766934 2 528.8084106445312 MULTI HCD FTMS 0 0 0 13921 170350.546875 0.562566080301014 4 -0.111358642578125 5 Unmodified _VPVKDSWLL_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 36.506200033944 0.08138327636155518 2 W{I|L}{I|L} 3 6 25.93 0 0 2.4564 0 0 625.34575087715 0 625.34575087715 0 0.5815970334744236 0 0 0 0.4247425010840047 0 0 0 + W{I|L}{I|L} 2.4564 + + 197 NaN NaN 150947.7 NaN 10711 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13927 62.326 NaN 291850 35 0 20865 0.261 + 34671 YPTISLHAL 9 75 507.7844046102802 1013.5542562873604 2 507.7845153808594 MULTI HCD FTMS 0 0 0 13921 174667.890625 0.5340749399862654 4 -0.111358642578125 6 Unmodified _YPTISLHAL_ ENSG00000074201|ENST00000525428|CLNS1A 92.8221339359638 0.0044520161739443126 2 YPT{I|L}{[TV]|[{I|L}S]}HA{I|L} 9 0 + 73.456 0 0 7.2474 7.2474 95.83 0 0 0 49.643623535139966 8.256886463274284 8.256886463274284 72.36346736360778 0 1.9124379954164592 1.5228787452803376 0.5 0 + + YPT{I|L}{[TV]|[{I|L}S]}HA{I|L};Y{M(Oxidation (M))|F}[{I|L}T][{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.2474;0.10778 +;- + 189 + NaN NaN 133078.1 NaN 10712 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13928 62.329 NaN 286520 35 0 62422 0.261 + 35705 YYLDWIHHY 9 61 437.2047859599138 1308.5925284799414 3 437.20489501953125 MULTI HCD FTMS 0 0 0 13921 149225.375 0.20086007198505382 7 -0.20933151245117188 7 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 51.629811660486645 0.02929079705179888 2 YY{I|L}DW{I|L}HHY 9 0 + 96.578 0 0 7.3803 7.3803 95.22 0 0 0 84.98441900057003 14.09256854528806 14.09256854528806 40.21652514092061 0 1.6747425010840047 2 0.4247425010840047 0 + + YY{I|L}DW{I|L}HHY;YY[YG]{[HG]|PP}{I|L}HHY 7.3803;4.307 +;- + 151 + NaN NaN 141440.4 NaN 10713 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13929 62.333 NaN 136060 35 0 43304 0.261 -1 0 40 413.2661802532431 412.2589037866431 1 413.26611328125 MULTI HCD FTMS 0 0 0 13921 184755.4375 0.38043506797695836 -505 12.526531219482422 8 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.5425 0 0 247.18001387140714 0 247.18001387140714 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.5425 - 1 + NaN NaN 122680.5 NaN 10714 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13930 62.336 NaN 957800 35 0 337810 0.261 + 9939 IDMLLSSQVNE 11 54 416.87686943726777 1247.6087789120033 3 416.8851623535156 MULTI HCD FTMS 0 0 0 13921 40529.4609375 0.2960977412247207 6 -0.1730804443359375 9 Unmodified _IDMLLSSQVNE_ ENSG00000182263|ENST00000333129|FIGN 4.5288652416199255 0.3990586020344083 2 {M(Oxidation (M))|F} 1 10 21.99 0 0 1.7625 0 0 1082.529827961611 0 1082.529827961611 0 2.5257498915995313 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.7625 + + 9 + NaN NaN 236476.4 NaN 10715 3213 13921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13932 62.341 NaN 447340 35 0 30601 0.327 + 608 APFKFDMEL 9 97 557.2680039090901 1112.5214548849801 2 557.2677612304688 MULTI HCD FTMS 0 0 0 13931 182465.015625 0.21962095558548256 24 -0.6463890075683594 1 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 76.82478488871298 0.006879825292024087 2 [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L} 9 0 + 57.853 0 0 5.2002 5.2002 89.024 0 0 0 3.65279269351241 38.389399919613965 3.65279269351241 13.04953742795611 0 1.8494850021680094 0 0.3494850021680094 0 + + [PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}D{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}AP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ES]|[DT]|[{I|L}C]}VD{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}DV{[ES]|[DT]|[{I|L}C]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F}PA{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F}P{I|L}A;{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F}{I|L}PA;[{M(Oxidation (M))|F}E]{I|L}[YN]{M(Oxidation (M))|F}PA{I|L} 5.2002;4.0272;3.947;2.5052;2.1504;1.24;0.59512;0.46377;0.38229 +;-;-;-;-;-;-;-;- + 724 NaN NaN 176607.7 NaN 10716 3214 13931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13933 62.345 NaN 266240 35 0 55227 0.261 + 19630 NVDPDSVVL 9 39 479.2480633375846 956.4815737419692 2 479.2480773925781 MULTI HCD FTMS 0 0 0 13931 98187.2421875 0.24734726836816107 -1 0.03282928466796875 2 Unmodified _NVDPDSVVL_ ENSG00000099860|ENST00000215631|GADD45B 31.26834338654808 0.10542797264966089 2 VV{I|L} 3 6 29.693 0 0 3.1044 0 0 627.251756736525 0 627.251756736525 0 4.987737688117235 0 0 0 0.5 0 0 0 + VV{I|L} 3.1044 + + 11 NaN NaN 129208 NaN 10717 3214 13931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13934 62.349 NaN 359000 35 0 36662 0.261 + 11042 IYFEYSHAF 9 72 588.7713555955214 1175.5281582578427 2 588.7554321289062 MULTI HCD FTMS 0 0 0 13931 77124.5390625 0.3483470565203534 5 -0.14025115966796875 3 Unmodified _IYFEYSHAF_ ENSG00000113318|ENST00000265081|MSH3 26.88365393820708 0.12808753336095696 2 {I|L}Y{M(Oxidation (M))|F}QQW 6 6 42.745 0 0 3.6363 0 0 0 307.1084078424438 307.1084078424438 5.7010752059608905 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 {I|L}Y{M(Oxidation (M))|F}QQW 3.6363 - 559 + NaN NaN 158378.1 NaN 10718 3214 13931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13935 62.352 NaN 413440 35 0 37391 0.261 + 13964 KYRPLFDYF 9 72 624.8243081398932 1247.6340633465863 2 624.824462890625 MULTI HCD FTMS 0 0 0 13931 146621.640625 0.37638890849849793 -5 0.13757705688476562 4 Unmodified _KYRPLFDYF_ ENSG00000196305|ENST00000443024|IARS1 43.77239144664712 0.04802738721622131 2 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F} 9 4 + 51.282 0 0 4.1103 4.1103 87.934 0 0 0 14.72743112049912 20.084099879420947 14.72743112049912 15.268024924119665 0 0.5 2 0 0.7742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RYK{M(Oxidation (M))|F} 4.1103;2.8866 -;- 145 NaN NaN 154264.8 NaN 10719 3214 13931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13936 62.356 NaN 355380 35 0 35941 0.264 -1 YDSCCVIDKIT 11 55 439.5337764924605 1315.5795000775815 3 439.53363037109375 MULTI HCD FTMS 0 0 0 13931 48960.328125 0.018646511909779822 52 -1.331146240234375 5 Carbamidomethyl (C) _YDSC(Carbamidomethyl (C))CVIDKIT_ ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827|THRA;THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant 12.227587767072771 0.3505430386502343 2 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 -1 42.541 0 0 3.2336 0 0 0 850.3798290172878 850.3798290172878 29.045905011532 0 0 0 0 0.9247425010840047 1.6989700043360187 0.6382104921644451 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 3.2336 - 63 NaN NaN 149172.3 NaN 10720 3214 13931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13937 62.359 NaN 299900 35 0 18190 0.261 + 27466 SYVVAMETF 9 65 531.7442774086093 1061.4740018840184 2 531.7440795898438 MULTI HCD FTMS 0 0 0 13931 41834.32421875 0.38048679745164204 -1 0.03282928466796875 6 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 92.4914307365334 0.004460681868130716 2 {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]}V + + 74.954 10.458 2.995 7.0613 7.0613 65.747 0 0 0 0 57.47933455448525 0 0 0 2.1747425010840047 0 1.055462187404089 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 7.0613 + + 427 + NaN NaN 134672.5 NaN 10721 3214 13931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13939 62.364 NaN 6027100 35 0 934600 0.327 + 5183 FFDAELSQM 9 112 552.2393087556661 1102.4640645781321 2 552.2396240234375 MULTI HCD FTMS 0 0 0 13938 3172940.75 0.5727135523198852 6 -0.18648910522460938 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.339 3.7236 1.266 8.9199 8.9199 68.629 0 0 0 0 65.22517647119437 0 0 0 3.1861818737241734 0 1.7544321917401078 0.9247425010840047 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9199 + + 5607 + NaN NaN 854817.2 NaN 10722 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13940 62.368 NaN 954560 35 0 103540 0.261 + 11114 IYIDRGVVF 9 79 541.3055654441932 1080.5965779551864 2 541.3058471679688 MULTI HCD FTMS 0 0 0 13938 505768.65625 0.9169804647985749 2 -0.055614471435546875 2 Unmodified _IYIDRGVVF_ ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 63.960520009940105 0.0120409805053046 2 {I|L}Y{I|L}DRRV 7 3 72.158 0 0 6.6776 0 0 0 162.05605493717033 162.05605493717033 40.44531259372398 0 0 0 0 2.6237125054200234 1.5228787452803376 0.3252574989159953 0.3494850021680094 {I|L}Y{I|L}DRRV 6.6776 - 846 + NaN NaN 233563.8 NaN 10723 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13941 62.372 NaN 1005200 35 0 87543 0.261 + 2933 DYSYGFAYI 9 105 549.7405377528175 NaN 0 549.7503051757812 PEAK HCD FTMS 0 0 0 13938 32577.74609375 0.3258823288525425 -4 0.11151504516601562 3 Unmodified _DYSYGFAYI_ ENSG00000109099|ENST00000312280|PMP22;ENST00000395936.5_2_17:15134236-15138539:-|nuORF;ENST00000494511.5_1_17:15134236-15168564:-|nuORF 23.1484247019978 0.16626532474190622 2 {I|L}D{M(Oxidation (M))|F}[EP]D 6 8 20.979 0 0 1.9116 0 0 131.07644347816648 247.07207666568596 378.14852014385247 0 0 0 0 0 0.8807196863200843 0 0.7302046884880937 0 {I|L}D{M(Oxidation (M))|F}[EP]D 1.9116 - 182 + NaN NaN 248985.8 NaN 10724 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13942 62.375 NaN 743930 35 0 163220 0.261 + 3228 EDLIAYLK 8 67 482.77117332080724 963.5277937084145 2 482.7709655761719 MULTI HCD FTMS 0 0 0 13938 319314.625 0.887751294368047 3 -0.0811920166015625 4 Unmodified _EDLIAYLK_ CON__P62894 39.957323273324995 0.23147789240432073 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY{I|L}K 8 0 + 46.407 0 0 4.8164 4.8164 91.109 0 0 0 -0.5926340775231864 12.06169761270013 -0.5926340775231864 46.40723485800656 0 0.7302046884880937 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}AY{I|L}K 4.8164 + + 126 + NaN NaN 199475.5 NaN 10725 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13943 62.379 NaN 808020 35 0 166240 0.261 + -1 FFSFCTMW 8 86 563.2305819659182 1124.4466109986363 2 563.23095703125 MULTI HCD FTMS 0 0 0 13938 409940.21875 0.5412073125460165 6 -0.18648910522460938 5 Carbamidomethyl (C) _FFSFC(Carbamidomethyl (C))TMW_ REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|125|2|anti-sense 20.871210003555333 0.44023077629866025 2 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 72.625 0 0 6.4588 0 0 315.08580214668126 0 315.08580214668126 0 40.287618118533445 0 0 0 2.4049471895720984 0 0.3494850021680094 0 S{I|L}EAD{M(Oxidation (M))|F}E 6.4588 - 664 NaN NaN 224425 NaN 10726 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13944 62.382 NaN 479360 35 0 111620 0.261 + 32778 WRSHSLEL 8 56 514.268413171855 NaN 0 514.2510375976562 PEAK HCD FTMS 0 0 0 13938 41061.828125 1 0 0 6 Unmodified _WRSHSLEL_ REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF 13.50788311687929 0.38822285293237185 2 E{I|L}SA 4 -1 22.907 0 0 2.2315 0 0 131.1303376871213 492.17328821353755 623.3036259006589 0 0 0 0 0 0 0 0.8494850021680094 0 E{I|L}SA 2.2315 - 45 + NaN NaN 156547.4 NaN 10727 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13945 62.385 NaN 303860 35 0 21932 0.261 + 6027 FPDRIMNTF 9 76 570.7786984605716 1139.5428439879431 2 570.7783203125 MULTI HCD FTMS 0 0 0 13938 197048.015625 0.6319037122812889 6 -0.18648910522460938 7 Unmodified _FPDRIMNTF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF 84.5221896805406 0.004669506596793478 2 R{I|L}MNT{M(Oxidation (M))|F} 6 3 56.899 0 0 4.9931 0 0 359.14830214668126 0 359.14830214668126 0 30.656753288559813 0 0 0 1.6747425010840047 0 0 0.75 + R{I|L}MNT{M(Oxidation (M))|F} 4.9931 + + 725 NaN NaN 129898.9 NaN 10728 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13946 62.389 NaN 256160 35 0 18628 0.261 + 2940 DYTPYLKFT 9 77 574.2860227486478 NaN 0 574.2687377929688 PEAK HCD FTMS 0 0 0 13938 41953.91015625 1 0 0 8 Unmodified _DYTPYLKFT_ ENSG00000108309|ENST00000426726|RUNDC3A;ENST00000587483.5_1_17:42391821-42393770:+|nuORF;ENST00000590834.5_1_17:42386140-42393891:+|nuORF;ENST00000593079.1_1_17:42392127-42392978:+|nuORF;nc|ENSG00000108309|Q59EK9-2|RUNDC3A;nc|ENSG00000108309|Q59EK9-3|RUNDC3A;nc|ENSG00000108309|Q59EK9-4|RUNDC3A 8.745405648335112 0.25286782695573473 2 S 1 9 9.732 0 0 0.8488 0 0 278.1182705299123 778.3771497964233 1056.4954203263355 0 0 0 0 0 0 0 0.4247425010840047 0 S 0.8488 - 57 + NaN NaN 127315.5 NaN 10729 3215 13938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13948 62.393 NaN 508080 35 0 22557 0.327 + 22855 QYMERLQLL 9 82 597.3201801746794 1192.6258074161588 2 597.3214111328125 MULTI HCD FTMS 0 0 0 13947 93487.328125 0.37488744490039794 4 -0.124114990234375 1 Unmodified _QYMERLQLL_ ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENST00000495492.1_1_1:155182265-155182385:+|nuORF;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;nc|ENSG00000173171|Q13505-3|MTX1 60.07390631473393 0.0174780869009295 2 TAN[{I|L}V]{I|L}ATW 9 8 33.096 0 0 2.775 0 0 205.0749625398593 0 205.0749625398593 0 5.4440873258899884 0 0 0 0 0 0.3252574989159953 0 TAN[{I|L}V]{I|L}ATW 2.775 - 493 + NaN NaN 160989.2 NaN 10730 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13949 62.398 NaN 327050 35 0 18189 0.261 + 17046 LYKELGEYF 9 60 581.2942099727629 1160.5738670123258 2 581.2948608398438 MULTI HCD FTMS 0 0 0 13947 58739.96484375 0.33406357800561964 4 -0.124114990234375 2 Unmodified _LYKELGEYF_ ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1 47.594388314883695 0.03493607795751234 2 {I|L}YKE{I|L}{[DA]|[EG]}Y{M(Oxidation (M))|F} 9 0 + 77.73 0 0 6.6976 6.6976 94.213 0 0 0 56.76120488461861 16.478174818886373 16.478174818886373 47.37818021115855 0 2.10697580801237 2 0 0.3807196863200844 + + {I|L}YKE{I|L}{[DA]|[EG]}Y{M(Oxidation (M))|F};[RH][KQ]P{[DA]|[EG]}Y{M(Oxidation (M))|F} 6.6976;2.6153 +;- + 47 + NaN NaN 129817.3 NaN 10731 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13950 62.401 NaN 444000 35 0 69322 0.262 + -1 VNCMERVI 8 69 490.2391663249743 978.4637797167486 2 490.2391662597656 MULTI HCD FTMS 0 0 0 13947 66139.1953125 0.647453295322481 1 -0.026142120361328125 3 Oxidation (M) _VNCM(Oxidation (M))ERVI_ REV__ENSG00000205476|ENST00000380243|CCDC85C 14.838274106304384 0.4846187982323419 2 {[NV]|[RG]}D 3 -1 19.705 0 0 2.0139 0 0 0 647.3018553277009 647.3018553277009 -0.5558471418748887 0 -0.5558471418748887 0 0 0.9247425010840047 0 0 0 {[NV]|[RG]}D 2.0139 - 31 + NaN NaN 170629.1 NaN 10732 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13951 62.405 NaN 249350 35 0 75855 0.261 -1 WLSGPLCVMY 10 45 621.2884025285667 1240.5622521239334 2 621.28857421875 MULTI HCD FTMS 0 0 0 13947 46403.99609375 0.5121508959497675 1 -0.026142120361328125 4 Carbamidomethyl (C),Oxidation (M) _WLSGPLC(Carbamidomethyl (C))VM(Oxidation (M))Y_ ENSG00000187918|ENST00000641930|OR51I2 7.289230182591677 0.43672065049472153 2 E[PA]{I|L} 4 -1 18.188 0 0 1.4661 0 0 812.3345814435562 0 812.3345814435562 0 14.69273760456403 0 0 0 0.5 0 0 0 E[PA]{I|L} 1.4661 - 23 NaN NaN 137078.2 NaN 10733 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13952 62.408 NaN 346670 35 0 13113 0.262 + 10637 IPTAPPPLLP 10 83 508.3127737312263 1014.6109945292526 2 508.3128356933594 MULTI HCD FTMS 0 0 0 13947 28819.234375 0.3460717324995279 1 -0.026142120361328125 5 Unmodified _IPTAPPPLLP_ ENST00000359359.6_3_6:36891854-36892064:+|nuORF 37.97399986684836 0.1629881689457739 2 {I|L}PT 3 7 43.008 0 0 4.2388 0 0 0 700.403255529168 700.403255529168 17.32902204431447 0 0 0 0 0.7302046884880937 1.154901959985743 0.8494850021680094 0 + {I|L}PT 4.2388 + + 191 + NaN NaN 154170.7 NaN 10734 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13953 62.411 NaN 235140 35 0 19988 0.261 + 18181 MPDLDLHL 8 63 485.23902124256807 NaN 0 485.23846435546875 PEAK HCD FTMS 0 0 0 13947 59152.8359375 0.49083377258317346 -8 0.216094970703125 6 Oxidation (M) _M(Oxidation (M))PDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 70.71552829651908 0.1358538012521902 2 PD{I|L}D{I|L} 5 3 23.9 0 0 2.4679 0 0 147.03553785618936 265.1300448053344 412.1655826615238 0 0 0 0 0 1.305462187404089 0 0 0 + PD{I|L}D{I|L} 2.4679 + + 50 + NaN NaN 136778.5 NaN 10735 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13954 62.415 NaN 208300 35 0 17207 0.261 -1 MVAMVEVQL 9 55 526.2620521619511 1050.5095513907022 2 526.2608642578125 MULTI HCD FTMS 0 0 0 13947 61695.73046875 0.7457971400190881 -1 0.02947235107421875 7 2 Oxidation (M) _M(Oxidation (M))VAM(Oxidation (M))VEVQL_ ENSG00000160991|ENST00000495936|ORAI2;ENSG00000175938|ENST00000318663|ORAI3;ENSG00000276045|ENST00000617316|ORAI1;nc|ENSG00000276045|Q96D31-2|ORAI1 22.736283301280096 0.1639198954644489 2 EVQ{I|L} 4 -1 44.24 0 0 4.2113 0 0 563.2430897443375 0 563.2430897443375 0 38.75569708000178 0 0 0 1.2302046884880937 0 0 0 EVQ{I|L} 4.2113 + + 73 NaN NaN 137844.9 NaN 10736 3216 13947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13956 62.42 NaN 8259800 35 0 1200500 0.326 + 20024 NYIGLINRI 9 99 538.3163769983624 1074.6182010635248 2 538.3169555664062 MULTI HCD FTMS 0 0 0 13955 5093501 1 0 0 1 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 152.41221235671458 6.276234901293889E-06 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 113.71 0 0 10.582 10.582 94.465 0 0 0 20.7711470149615 16.478174818886373 16.478174818886373 9.208187539523749 0 2.7302046884880937 2 0 2.559894379144197 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]G{I|L}{I|L}{I|L}NR{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};[Y{I|L}]NG{I|L}{I|L}NR{I|L};[YN]G{I|L}{I|L}{I|L}GGR{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};[Y{I|L}]NG{I|L}{I|L}GGR{I|L};[YN]G{I|L}{I|L}[RN]{I|L}{I|L} 10.582;9.7248;8.8607;8.6488;8.4346;8.3655;8.0038;7.792;7.5087;6.7136 +;-;-;+;-;-;-;-;-;- + 1416 NaN NaN 860897.3 NaN 10737 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13957 62.424 NaN 4067700 35 0 345110 0.225 + 10972 IYDSVKVYF 9 118 567.296899611243 1132.579246289286 2 567.27978515625 MULTI HCD FTMS 0 0 0 13955 895464.125 0.6507346856391345 2 -0.0617218017578125 2 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 76.82478488871298 0.006879825292024087 2 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F} 9 3 + 79.465 0 0 7.0163 7.0163 87.387 0 0 0 9.854771935914002 10.136080340528665 9.854771935914002 4.018637558036673 0 1.3494850021680094 2 0.7856668758921829 0.2742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVYV{M(Oxidation (M))|F};[Y{I|L}]DSKVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SVKVY{M(Oxidation (M))|F};{I|L}YDS{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L}T;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKYV{M(Oxidation (M))|F};[Y{I|L}]DSVKVY{M(Oxidation (M))|F} 7.0163;6.6615;6.4847;6.1548;6.1462;6.1299;6.1214;5.7999;5.6232;5.6146 -;-;-;-;-;-;-;-;-;+ + 5378 NaN NaN 557898.8 NaN 10738 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13958 62.427 NaN 263580 35 0 10783 0.261 + 5522 FLDGNEMTL 9 69 528.2396749444948 1054.4647969557896 2 528.2396850585938 MULTI HCD FTMS 0 0 0 13955 66545.5625 0.642227219767055 10 -0.3045845031738281 3 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ ENSG00000169504|ENST00000374379|CLIC4 43.77239144664712 0.04802738721622131 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{M(Oxidation (M))|F}T{I|L} 9 0 + 28.601 0 0 2.7123 2.7123 88.211 0 0 0 0.8263018771895716 23.53901193727941 0.8263018771895716 28.600680612648034 0 0.9604093769761877 0 0 0.28872548999643577 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{M(Oxidation (M))|F}T{I|L} 2.7123 + + 67 NaN NaN 145826.4 NaN 10739 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13959 62.43 NaN 463050 35 0 44917 0.261 + 30578 VNQYEVFL 8 73 506.2609215000308 1010.5072900668616 2 506.2609558105469 MULTI HCD FTMS 0 0 0 13955 81249.3671875 0.14101164439840438 12 -0.3536338806152344 4 Unmodified _VNQYEVFL_ ENST00000510531.5_1_5:6644946-6645183:+|nuORF 10.823927491677226 0.514154816617796 2 V{M(Oxidation (M))|F}{I|L} 3 5 32.435 0 0 3.2098 0 0 633.276170799025 0 633.276170799025 0 19.731975075880328 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}{I|L} 3.2098 + + 73 NaN NaN 159452.7 NaN 10740 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13960 62.434 NaN 301780 35 0 16492 0.261 + 27467 SYVVAMETF 9 68 531.7442774086093 1061.4740018840184 2 531.7454223632812 MULTI HCD FTMS 0 0 0 13955 47744.13671875 0.43423705333976903 2 -0.0617218017578125 5 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 74.92900055777586 0.007493270374442853 2 {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]}V + + 60.623 7.4473 2.1329 5.7112 5.7112 63.462 0 0 0 0 43.148350154927826 0 0 0 1.9247425010840047 0 0.3494850021680094 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VVA{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 5.7112 + + 252 + NaN NaN 151009.1 NaN 10741 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13961 62.437 NaN 146990 35 0 14080 0.261 + 30616 VPDEELDAL 9 55 500.7453065703512 999.4760602075024 2 500.74481201171875 MULTI HCD FTMS 0 0 0 13955 36420.8515625 0.6684183389782002 -4 0.111358642578125 6 Unmodified _VPDEELDAL_ ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF;nc|ENSG00000186716|P11274-2|BCR 20.453626601364224 0.18364154288633264 2 {I|L}DA{I|L} 4 5 39.825 0 0 3.9846 0 0 569.2322151019467 0 569.2322151019467 0 18.856355030044924 0 0 0 0.7887254899964358 0 0 0 + {I|L}DA{I|L} 3.9846 + + 31 NaN NaN 107577 NaN 10742 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13962 62.44 NaN 115490 35 0 11718 0.261 + 17586 LYVVHPYVQF 10 46 422.22907790505434 1263.665404315363 3 422.563720703125 MULTI HCD FTMS 0 0 0 13955 7466.1748046875 0.046482334122670665 11 -0.3240623474121094 7 Unmodified _LYVVHPYVQF_ ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 10.823927491677226 0.4098686510432541 2 {I|L}Y 2 8 45.217 0 0 3.5782 0 0 0 984.4944109333418 984.4944109333418 28.226825097560422 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.5782 + + 4 + NaN NaN 113611.5 NaN 10743 3217 13955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13964 62.445 NaN 808200 35 0 100170 0.326 + 28996 TYDPWIGKL 9 93 546.78900797215 NaN 0 546.8006591796875 PEAK HCD FTMS 0 0 0 13963 20819.0546875 0.38623494344577314 -3 0.0811920166015625 1 Unmodified _TYDPWIGKL_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 41.8396318013385 0.07237558272173583 2 K{I|L}ANE{I|L} 6 8 41.974 0 0 3.8453 0 0 149.08272508291412 271.07233606510005 420.15506114801417 0 0 0 0 0 0 0 0.566901560044258 0.9674165578762486 K{I|L}ANE{I|L} 3.8453 - 481 + NaN NaN 205213.8 NaN 10744 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13965 62.45 NaN 679540 35 0 88591 0.261 + -1 YILPNLMPTF 10 82 612.8212385087053 1223.6279240842105 2 612.8062133789062 MULTI HCD FTMS 0 0 0 13963 20504.19921875 0.22984537919304188 4 -0.12494659423828125 2 Oxidation (M) _YILPNLM(Oxidation (M))PTF_ REV__nc|ENSG00000260811|A6NMZ5|OR4C45 6.2057823575117 0.44245551207394906 2 [Y{I|L}]S[NP]GTQSY 10 -1 55.921 0 0 4.5701 0 0 0 110.09440772284361 110.09440772284361 34.69151233673003 0 0 0 0 0 2 1.1307196863200843 0 [Y{I|L}]S[NP]GTQSY 4.5701 - 1139 NaN NaN 181526.3 NaN 10745 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13966 62.453 NaN 474970 35 0 92210 0.261 -1 HPWMQDVLL 9 69 577.7866707727143 1153.5587886122285 2 577.7874755859375 MULTI HCD FTMS 0 0 0 13963 164991.640625 0.38398995669930236 16 -0.4579277038574219 3 Oxidation (M) _HPWM(Oxidation (M))QDVLL_ ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;nc|ENSG00000137193|P11309-2|PIM1 17.11289562659939 0.2125047172822487 2 V{I|L}{I|L} 3 -1 31.198 0 0 2.7045 0 0 810.3092518537125 0 810.3092518537125 0 14.030899869919438 0 0 0 0.5 0 0 0 V{I|L}{I|L} 2.7045 + + 33 NaN NaN 157644.5 NaN 10746 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13967 62.456 NaN 550770 35 0 77782 0.263 + 12523 KRYGSDPVFRF 11 75 457.91043359737347 1370.7094713923204 3 457.9103698730469 MULTI HCD FTMS 0 0 0 13963 100848.046875 0.44072332631283384 3 -0.10529708862304688 4 Unmodified _KRYGSDPVFRF_ ENSG00000123607|ENST00000243344|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENST00000476227.1_1_2:166805880-166810281:-|nuORF;nc|ENSG00000123607|Q7Z4L5-2|TTC21B 2.4347853303010236 0.4082425251555256 2 [R{M(Oxidation (M))|F}]{I|L}[YQ]D{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}D 10 8 21.7 0 0 1.5831 0 0 0 90.03512588055438 90.03512588055438 9.225534297491294 0 0 0 0 0.4247425010840047 0 0 0.3807196863200844 [R{M(Oxidation (M))|F}]{I|L}[YQ]D{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}D 1.5831 - 221 NaN NaN 171833.5 NaN 10747 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13968 62.46 NaN 512960 35 0 101660 0.261 + 35958 YYVPRGFWKQF 11 52 497.5906135207256 1489.7500111623767 3 497.591064453125 MULTI HCD FTMS 0 0 0 13963 82458.140625 0.35644217376380444 3 -0.10529708862304688 5 Unmodified _YYVPRGFWKQF_ ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;nc|ENSG00000114374|O00507-2|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant 17.04857598603903 0.30853761023565673 2 YYV 3 8 54.693 0 0 3.6713 0 0 0 1061.5324323737432 1061.5324323737432 34.20818753952375 0 0 0 0 0.8494850021680094 2 0 0 + YYV 3.6713 + + 18 + NaN NaN 179671.4 NaN 10748 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13969 62.463 NaN 415320 35 0 48437 0.261 + 17633 LYYDRVHVVF 10 66 437.567803114808 1309.681579944624 3 437.56781005859375 MULTI HCD FTMS 0 0 0 13963 77595.7265625 0.7878792950801713 -3 0.0811920166015625 6 Unmodified _LYYDRVHVVF_ ENST00000472127.1_1_3:42672642-42674322:+|nuORF 14.957161354070239 0.3712077760547347 2 {I|L}Y 2 8 41.454 0 0 3.1652 0 0 0 1030.5110439318223 1030.5110439318223 20.969100130080562 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + {I|L}Y 3.1652 + + 76 + NaN NaN 157732.9 NaN 10749 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13970 62.466 NaN 240130 35 0 45265 0.261 + 11950 KFKSNELL 8 56 489.78477679635125 NaN 0 489.7845764160156 PEAK HCD FTMS 0 0 0 13963 69673.765625 0.830197324301389 -2 0.05171966552734375 7 Unmodified _KFKSNELL_ REV__ENSG00000198700|ENST00000361565|IPO9 11.640296217721598 0.38822285293237185 2 {I|L} 1 -1 11.99 0 0 1.2265 0 0 131.09489986292118 730.3524761767264 861.4473760396477 0 0 0 0 0 0.5 0 0 0 {I|L} 1.2265 + + 5 + NaN NaN 122586.7 NaN 10750 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13971 62.47 NaN 121240 35 0 16463 0.261 + 30123 VGAWHHSF 8 41 470.7242202791852 939.4338876251704 2 470.7241516113281 MULTI HCD FTMS 0 0 0 13963 22030.291015625 0.22538318808006727 -1 0.025577545166015625 8 Unmodified _VGAWHHSF_ ENST00000599814.5_1_19:46357662-46357740:-|nuORF 13.50788311687929 0.4944073034352369 2 HS{M(Oxidation (M))|F} 3 5 31.682 0 0 3.3725 0 0 550.2639179980205 0 550.2639179980205 0 9.916440611282624 0 0 0 1 0 0 0 + HS{M(Oxidation (M))|F} 3.3725 + + 9 + NaN NaN 108847.2 NaN 10751 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13972 62.473 NaN 95478 35 0 11602 0.261 + 30617 VPDEELDAL 9 37 500.7453065703512 999.4760602075024 2 500.74609375 MULTI HCD FTMS 0 0 0 13963 27592.08984375 0.5063873597421915 -3 0.0811920166015625 9 Unmodified _VPDEELDAL_ ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF;nc|ENSG00000186716|P11274-2|BCR 20.453626601364224 0.18364154288633264 2 D[HD]{I|L}NAN 7 6 39.781 0 0 3.9802 0 0 202.1317616193375 0 202.1317616193375 0 18.81182901342207 0 0 0 0.4247425010840047 0 0 0.3807196863200844 D[HD]{I|L}NAN 3.9802 - 44 NaN NaN 110914.2 NaN 10752 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13973 62.476 NaN 119100 35 0 4113.1 0.261 + 2847 DYLKRFYLY 9 39 640.8375989063468 1279.6606448794935 2 641.3853759765625 MULTI HCD FTMS 0 0 0 13963 16191.4970703125 0.06992947116745628 12 -0.3542060852050781 10 Unmodified _DYLKRFYLY_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 14.838274106304384 0.23215694253501695 2 DY{I|L}KH 5 5 57.959 0 0 4.5292 0 0 0 620.2943819635374 620.2943819635374 55.48455006504028 0 0 0 0 0 2 0 0 DY{I|L}KH 4.5292 - 17 + NaN NaN 120405.5 NaN 10753 3218 13963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13975 62.481 NaN 2107000 35 0 901760 0.327 + 13966 KYRPLFDYF 9 66 416.88519135956005 1247.6337446788802 3 416.8852233886719 MULTI HCD FTMS 0 0 0 13974 580722.5 0.8683043620062406 2 -0.06915283203125 1 Unmodified _KYRPLFDYF_ ENSG00000196305|ENST00000443024|IARS1 10.823927491677226 0.26684000660059787 2 Y{M(Oxidation (M))|F} 2 7 27.717 0 0 2.2215 0 0 919.4917835415547 0 919.4917835415547 0 22.231975075880328 0 0 0 0.8252574989159953 0 0 0 + Y{M(Oxidation (M))|F} 2.2215 + + 17 NaN NaN 414643 NaN 10754 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13976 62.486 NaN 1112700 35 0 96160 0.261 + 34186 YPDINFNRL 9 86 576.2958267514911 1150.577100569782 2 576.296142578125 MULTI HCD FTMS 0 0 0 13974 469717.21875 0.7337868985293068 -2 0.0617218017578125 2 Unmodified _YPDINFNRL_ ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-2|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-5|PARG 114.20165948288297 0.0022564706844261533 2 YPD{I|L}N{M(Oxidation (M))|F}NR{I|L} 9 0 + 100.61 0 0 8.7439 8.7439 93.059 0 0 0 67.37363625577734 7.1919646325935815 7.1919646325935815 9.208187539523749 0 2.385151878060192 1.5228787452803376 0.2742275032520141 1.0189301784845295 + + YPD{I|L}N{M(Oxidation (M))|F}NR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}GGR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}N{M(Oxidation (M))|F}NR{I|L};Y{I|L}[DP]N{M(Oxidation (M))|F}NR{I|L};{I|L}Y[DP]N{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG{M(Oxidation (M))|F}NR{I|L};[DP]{I|L}YN{M(Oxidation (M))|F}NR{I|L} 8.7439;7.9436;7.9436;7.1471;6.2585;5.977;5.6744;5.4128;5.1544;4.9981 +;-;-;-;+;-;-;-;-;- + 535 + NaN NaN 270427.7 NaN 10755 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13977 62.489 NaN 674690 35 0 154860 0.261 + 13336 KYMDVQFDF 9 74 604.7681496085214 1207.5217462838427 2 604.7683715820312 MULTI HCD FTMS 0 0 0 13974 232835.875 0.052303821533072295 78 -2.0738487243652344 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 42.312485326615175 0.05472917415473307 2 DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 55.126 0 0 4.5652 0 0 438.19319350410314 0 438.19319350410314 0 38.98185062238838 0 0 0 1.8494850021680094 0 0 0 + DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.5652 + + 594 NaN NaN 187940.4 NaN 10756 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13978 62.493 NaN 543110 35 0 33547 0.261 + 31805 VYMDWYEKF 9 76 648.7839026924951 1295.55325245179 2 648.7843627929688 MULTI HCD FTMS 0 0 0 13974 150547.125 0.08807033651935055 21 -0.5513381958007812 4 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 69.33821966488729 0.009302356455414924 2 VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 106.65 0 0 8.2319 8.2319 94.745 0 0 0 64.47866299931142 10.642492736872597 10.642492736872597 16.104159301997 0 2.853917193908117 2 0.3494850021680094 0 + + VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}DWY[VG]T{M(Oxidation (M))|F};V{M(Oxidation (M))|F}YDWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[QT]K{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[KQ]T{M(Oxidation (M))|F};V{M(Oxidation (M))|F}YDWY[VG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[W{I|L}]DDK{M(Oxidation (M))|F};V{M(Oxidation (M))|F}YN{[{M(Oxidation (M))|F}C]|[YS]}[QT]K{M(Oxidation (M))|F} 8.2319;6.9888;6.6507;5.8789;5.2271;4.9701;4.3568;4.2977;3.0161;2.8741 +;+;-;-;-;-;-;-;-;- + 472 + NaN NaN 181558 NaN 10757 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13979 62.496 NaN 697420 35 0 173450 0.261 + 26095 SPHYQEWIL 9 65 586.7902648966975 1171.565976860195 2 586.791015625 MULTI HCD FTMS 0 0 0 13974 257071.234375 0.3569218665312035 -2 0.0617218017578125 5 Unmodified _SPHYQEWIL_ ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 27.628801355627647 0.12213550946336599 2 SDEW{I|L}{I|L} 6 4 62.766 0 0 5.3574 0 0 410.1948414533219 0 410.1948414533219 0 54.80713133096572 0 0 0 1.3252574989159953 0 0.6861818737241735 0 SDEW{I|L}{I|L} 5.3574 - 385 NaN NaN 199475.3 NaN 10758 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13980 62.499 NaN 181390 35 0 25851 0.262 + 22366 QPQDVDLAL 9 46 499.7612320934918 997.5079112537836 2 499.7613220214844 MULTI HCD FTMS 0 0 0 13974 74421.0234375 0.5046085922594085 -2 0.0617218017578125 6 Unmodified _QPQDVDLAL_ ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 21.536976647645854 0.1742816388551942 2 D{I|L}A{I|L} 4 5 49.24 0 0 4.9363 0 0 567.2662220685562 0 567.2662220685562 0 47.64645333192 0 0 0 1.5 0 0.3807196863200844 0 + D{I|L}A{I|L} 4.9363 + + 49 NaN NaN 118230.5 NaN 10759 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13981 62.503 NaN 291260 35 0 14379 0.261 + 14263 LCLENRYLL 9 79 597.3201801746794 1192.6258074161588 2 597.3197021484375 MULTI HCD FTMS 0 0 0 13974 46156.890625 0.1850907405099549 7 -0.20674896240234375 7 Carbamidomethyl (C) _LC(Carbamidomethyl (C))LENRYLL_ tr|U7SQU8|U7SQU8_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01805PE=4SV=1 44.40701690623563 0.04511410083598184 2 NATW 4 8 20.935 0 0 1.7554 0 0 702.4096036581494 0 702.4096036581494 0 1.9504625720438895 0 0 0 0 0 0.3054621874040891 0 NATW 1.7554 - 210 + NaN NaN 134396.7 NaN 10760 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13982 62.506 NaN 294470 35 0 60530 0.264 + 4272 EVILIDPFHK 10 38 404.23251848002667 1209.67572604028 3 404.2326965332031 MULTI HCD FTMS 0 0 0 13974 70660.5390625 0.055293949590238256 17 -0.4706077575683594 8 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 2.2527281973983926 0.46337965618007254 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L} 5 5 22.218 0 0 1.8367 0 0 0 639.2890484556625 639.2890484556625 11.416506143517749 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L} 1.8367 + + 15 + NaN NaN 123731.9 NaN 10761 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13983 62.509 NaN 141110 35 0 10576 0.261 -1 PYMDSPQSIGF 11 51 629.2761970388243 1256.5378411444485 2 629.2752075195312 MULTI HCD FTMS 0 0 0 13974 25707.064453125 0.201665430710348 6 -0.183929443359375 9 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 13.614867670302875 0.33845562336951207 2 {I|L} 1 -1 5.4846 0 0 0.43648 0 0 240.11153621951013 900.3236788385374 1140.4352150580476 0 0 0 0 0 0 0 0 0 {I|L} 0.43648 + + 10 + NaN NaN 111984.8 NaN 10762 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13984 62.513 NaN 269280 35 0 37628 0.263 + -1 RQCSLSKFYFF 11 71 494.9113819312456 1481.7123163939368 3 494.9112854003906 MULTI HCD FTMS 0 0 0 13974 52520.1796875 0.42416106425539624 10 -0.2919120788574219 10 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))SLSKFYFF_ REV__ENSG00000064989|ENST00000392370|CALCRL 6.623454094837244 0.3898724468670146 2 C[HV]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 41.075 0 0 2.7721 0 0 667.3698304703133 0 667.3698304703133 0 23.652340397648857 0 0 0 1.805462187404089 0 0 0 C[HV]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7721 - 93 + NaN NaN 127539 NaN 10763 3219 13974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13986 62.517 NaN 2540900 35 0 372520 0.327 + 5184 FFDAELSQM 9 92 552.2393087556661 1102.4640645781321 2 552.2394409179688 MULTI HCD FTMS 0 0 0 13985 1366154.125 0.24658984947803214 11 -0.3079490661621094 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.339 3.7236 1.2659 8.9199 8.9199 68.629 0 0 0 0 68.60079651702978 0 0 0 3.2302046884880937 0 1.7104093769761874 0.9247425010840047 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9199 + + 2783 + NaN NaN 476669.7 NaN 10764 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13987 62.522 NaN 1145600 35 0 132330 0.261 + 10542 IPHMDIEAL 9 79 519.7680403479925 1037.521527762785 2 519.7682495117188 MULTI HCD FTMS 0 0 0 13985 564197.5625 1 0 0 2 Unmodified _IPHMDIEAL_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 46.020951573049366 0.037705236580089195 2 E{M(Oxidation (M))|F}DEA{I|L}{I|L} 7 5 50.066 0 0 4.8256 0 0 202.13182265449376 0 202.13182265449376 0 42.10737562160646 0 0 0 1.2396518287104437 0 1.0994850021680094 0 E{M(Oxidation (M))|F}DEA{I|L}{I|L} 4.8256 - 1002 NaN NaN 275403.2 NaN 10765 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13988 62.526 NaN 329100 35 0 28858 0.261 + 13965 KYRPLFDYF 9 64 624.8243081398932 1247.6340633465863 2 624.82421875 MULTI HCD FTMS 0 0 0 13985 340266.625 0.8734903185933963 1 -0.032901763916015625 3 Unmodified _KYRPLFDYF_ ENSG00000196305|ENST00000443024|IARS1 51.629811660486645 0.02929079705179888 2 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F} 9 4 + 54.292 0 0 4.3516 4.3516 89.64 0 0 0 13.758330990418557 23.09439983606076 13.758330990418557 28.895840698002996 0 0.5 2 0 0.7742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[{I|L}P]RKY{M(Oxidation (M))|F};KYR{[{M(Oxidation (M))|F}C]|[YS]}KKE{M(Oxidation (M))|F} 4.3516;2.0356 -;- 105 NaN NaN 146417.2 NaN 10766 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13989 62.529 NaN 181750 35 0 37264 0.264 + 19631 NVDPDSVVL 9 36 479.2480633375846 956.4815737419692 2 479.248046875 MULTI HCD FTMS 0 0 0 13985 258137.9375 0.6502852334001561 5 -0.14767837524414062 4 Unmodified _NVDPDSVVL_ ENSG00000099860|ENST00000215631|GADD45B 12.240655878213236 0.2545997876781172 2 VV{I|L} 3 6 31.198 0 0 3.2617 0 0 627.2492542951187 0 627.2492542951187 0 31.197887582883936 0 0 0 0.5 0 0 0 + VV{I|L} 3.2617 + + 5 NaN NaN 129579.4 NaN 10767 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13990 62.532 NaN 618930 35 0 56473 0.261 + 26721 SYDPDFNQL 9 90 549.7405377528175 NaN 0 549.7505493164062 PEAK HCD FTMS 0 0 0 13985 99967.8203125 1 0 0 5 Unmodified _SYDPDFNQL_ ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF 38.175570920033316 0.08412639609110066 2 {I|L}E{I|L}[MD]D 6 8 25.763 0 0 2.3475 0 0 131.0782932806124 247.07216821842033 378.15046149903276 0 0 0 0 0 1.4247425010840047 0 0.7614393726401688 0 {I|L}E{I|L}[MD]D 2.3475 - 180 + NaN NaN 180129.8 NaN 10768 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13991 62.536 NaN 1351200 35 0 324880 0.261 + 24877 RYQFLEEAF 9 69 601.795584801941 1201.576616670682 2 601.7958984375 MULTI HCD FTMS 0 0 0 13985 526773.6875 0.29700672407363826 -4 0.124114990234375 6 Unmodified _RYQFLEEAF_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 75.76082778847304 0.0072241045649327805 2 EE{I|L}{M(Oxidation (M))|F}[NP]A{M(Oxidation (M))|F} 8 6 64.646 0 0 5.3801 0 0 236.11586196113439 0 236.11586196113439 0 35.487000600708285 0 0 0 1.4247425010840047 0 1.066901560044258 0.7614393726401688 EE{I|L}{M(Oxidation (M))|F}[NP]A{M(Oxidation (M))|F} 5.3801 - 639 NaN NaN 301129.3 NaN 10769 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13992 62.539 NaN 450410 35 0 39213 0.261 + 11115 IYIDRGVVF 9 78 541.3055654441932 1080.5965779551864 2 541.3052978515625 MULTI HCD FTMS 0 0 0 13985 220346.1875 0.3994971751085928 7 -0.20661163330078125 7 Unmodified _IYIDRGVVF_ ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 49.55428908609986 0.03219431099695407 2 {I|L}Y{I|L}{[CA]|SS}PRV{M(Oxidation (M))|F} 9 4 + 63.821 0 0 5.9061 5.9061 90.357 0 0 0 40.63363730737706 7.147642715192504 7.147642715192504 14.023722004121453 0 2.0682503180159344 1.5228787452803376 0 0.3807196863200844 {I|L}Y{I|L}{[CA]|SS}PRV{M(Oxidation (M))|F};[Y{I|L}]{I|L}DR[VG]V{M(Oxidation (M))|F};[Y{I|L}]{I|L}Q{[RE]|[WV]}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}DRAA{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}[AG]{[RE]|[WV]}{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}T[{I|L}V]{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 5.9061;4.6083;4.3588;3.7041;3.5016;0.51647 -;+;-;-;-;- + 353 + NaN NaN 157901.2 NaN 10770 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13993 62.542 NaN 347010 35 0 22088 0.261 + 709 APYTWSYPE 9 68 557.2503678788995 NaN 0 557.267822265625 PEAK HCD FTMS 0 0 0 13985 9970.048828125 0.8403234560450713 -1 0.036251068115234375 8 Unmodified _APYTWSYPE_ ENSG00000124659|ENST00000372876|TBCC;TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant 7.910154910731844 0.25691533546754686 2 E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F} 6 9 16.828 0 0 1.5126 0 0 131.06343007289405 165.06708704166252 296.1305171145566 0 0 0 0 0 0 0 0.3807196863200844 0 E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F} 1.5126 - 95 + NaN NaN 136365.5 NaN 10771 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13994 62.546 NaN 690830 35 0 51869 0.261 + 5897 FPDKVAIQL 9 97 515.800393316049 1029.586233698898 2 515.8001708984375 MULTI HCD FTMS 0 0 0 13985 246313.015625 0.361538863419967 -11 0.31407928466796875 9 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 96.93554129104106 0.004344229100022454 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 76.238 0 0 7.4047 7.4047 87.863 0 0 0 17.632192780232792 50.452861822262896 17.632192780232792 3.4678748622465605 0 1.8283409326844264 1.3979400086720375 0.5994850021680094 0.23965182871044374 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}GA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA[AG]{I|L}{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}Q{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}GA{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}GA{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}GA{I|L} 7.4047;7.0679;6.5703;5.6759;5.2428;5.2384;5.0521;4.906;4.9016;4.7152 +;-;-;-;-;-;-;-;-;- + 618 NaN NaN 189241.5 NaN 10772 3220 13985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13996 62.55 NaN 4572200 35 0 1407400 0.327 + 24714 RYLTVATVF 9 70 535.3056100150868 1068.5966670969735 2 535.30615234375 MULTI HCD FTMS 0 0 0 13995 2797108.75 0.5399714388028815 -3 0.10529708862304688 1 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 57.72198328787511 0.020768266150574023 2 {[TV]|[{I|L}S]}[HV]A[VP]TV{M(Oxidation (M))|F} 10 5 + 72.598 0 0 6.7937 6.7937 87.423 0 0 0 8.507112333562858 10.03469351593509 8.507112333562858 5.228787452803374 0 2 1.6989700043360187 1.8494850021680094 0 {[TV]|[{I|L}S]}[HV]A[VP]TV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[HV][VP]ATV{M(Oxidation (M))|F};[YR]{I|L}{[TV]|[{I|L}S]}ATV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}A[HV][VP]TV{M(Oxidation (M))|F};[Y{I|L}]R{[TV]|[{I|L}S]}ATV{M(Oxidation (M))|F};[YR]{I|L}G[{I|L}T]TV{M(Oxidation (M))|F};[YR]V[{I|L}T]ATV{M(Oxidation (M))|F};[Y{I|L}]RG[{I|L}T]TV{M(Oxidation (M))|F};[YR]VA[{I|L}T]TV{M(Oxidation (M))|F};[NP][KP][VP]ATV{M(Oxidation (M))|F} 6.7937;6.3044;5.9976;5.7422;5.7159;5.5297;5.3184;5.248;4.8505;4.341 -;-;+;-;-;-;-;-;-;- + 727 NaN NaN 796444.7 NaN 10773 3221 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13997 62.555 NaN 721190 35 0 108490 0.261 + 32779 WRSHSLEL 8 79 514.268413171855 NaN 0 514.2509765625 PEAK HCD FTMS 0 0 0 13995 7085.1513671875 0.17254836646870553 4 -0.114776611328125 2 Unmodified _WRSHSLEL_ REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF 13.50788311687929 0.38822285293237185 2 E{I|L}S 3 -1 17.906 0 0 1.7443 0 0 131.129764530856 563.2098883298399 694.3396528606959 0 0 0 0 0 0 0 0.9489700043360187 0 E{I|L}S 1.7443 - 107 + NaN NaN 201318.1 NaN 10774 3221 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13998 62.559 NaN 537380 35 0 260610 0.262 -1 0 65 427.3026965512157 852.5908401692315 2 427.302734375 MULTI HCD FTMS 0 0 0 13995 376251.28125 0.9827105562424803 -3 0.10529708862304688 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8162 0 0 687.5117976661049 0 687.5117976661049 0 1.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8162 - 11 + NaN NaN 163379 NaN 10775 3221 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 13999 62.562 NaN 417560 35 0 52285 0.261 + 26777 SYGKINILL 9 59 510.8079929300991 1019.6014329269982 2 510.8082580566406 MULTI HCD FTMS 0 0 0 13995 332017.03125 0.8637776153399815 -3 0.10529708862304688 4 Unmodified _SYGKINILL_ ENSG00000112249|ENST00000369162|ASCC3 36.506200033944 0.08138327636155518 2 [KG]YS{I|L}N{I|L}{I|L}{I|L} 9 4 + 56.164 0 0 5.5084 5.5084 87.715 0 0 0 3.65279269351241 33.767959391884546 3.65279269351241 9.208187539523749 0 0.7742275032520141 0 0 0.3807196863200844 [KG]YS{I|L}N{I|L}{I|L}{I|L};[KG]YS{I|L}GG{I|L}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KG]{I|L}N{I|L}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KG]{I|L}GG{I|L}{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}SY[KG]{I|L};{I|L}{I|L}N{I|L}SY[KG]{I|L};{I|L}{I|L}GG{I|L}SY[KG]{I|L} 5.5084;4.6053;4.5988;3.6957;2.91;2.7667;1.8636 -;-;+;-;-;-;- + 238 NaN NaN 156115.9 NaN 10776 3221 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14000 62.565 NaN 315660 35 0 55250 0.262 + 3263 EEAFAIFRKF 10 50 419.8923690589182 1256.6552777769546 3 420.2268981933594 MULTI HCD FTMS 0 0 0 13995 68786.921875 0.464517365945771 1 -0.019649505615234375 5 Unmodified _EEAFAIFRKF_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 10.898955630103616 0.4091668631510381 2 {I|L}A{M(Oxidation (M))|F}A[HC] 6 7 28.416 0 0 2.2613 0 0 596.3417726856641 0 596.3417726856641 0 7.983324797206279 0 0 0 0 0 0 0 {I|L}A{M(Oxidation (M))|F}A[HC] 2.2613 - 38 NaN NaN 131336.5 NaN 10777 3221 13995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14002 62.57 NaN 2997600 35 0 431070 0.326 + 20025 NYIGLINRI 9 100 538.3163769983624 1074.6182010635248 2 538.3165893554688 MULTI HCD FTMS 0 0 0 14001 1458189.875 0.28628439947297546 5 -0.15406036376953125 1 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 131.26759243768294 0.0005280990274065272 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 94.012 0 0 8.7484 8.7484 88.915 0 0 0 7.051572817950586 7.051572817950586 7.051572817950586 1.1227313277985473 0 2.6435078169319297 2 0 2.0743923658886185 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}{I|L}NR{I|L};NY{I|L}G{I|L}{I|L}GGR{I|L};[YN]G{I|L}{I|L}{I|L}NR{I|L};[YN]G{I|L}{I|L}[RN]{I|L}{I|L};NY{I|L}G{I|L}[RN]{I|L}{I|L};[Y{I|L}]NG{I|L}{I|L}NR{I|L};[Y{I|L}]NG{I|L}[RN]{I|L}{I|L};NY{I|L}{I|L}{I|L}GNR{I|L} 8.7484;8.6439;8.0922;7.2353;7.0114;6.9069;6.9039;6.3212;6.2167;5.2767 +;-;+;-;-;-;-;-;-;- + 963 NaN NaN 548656.6 NaN 10778 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14003 62.574 NaN 2688800 35 0 268770 0.25 + 10973 IYDSVKVYF 9 118 567.296899611243 1132.579246289286 2 567.2800903320312 MULTI HCD FTMS 0 0 0 14001 231106.1875 0.1679451002820145 7 -0.2031097412109375 2 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 67.83816525789305 0.009787749748478139 2 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F} 9 3 + 67.077 0 0 5.9225 5.9225 85.761 0 0 0 6.78641428551456 6.78641428551456 6.78641428551456 4.744237387763086 0 0.6989700043360187 2 1.1036348176228747 0 {[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}KVYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SK{I|L}VVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVVY{M(Oxidation (M))|F};{I|L}YDS{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[{I|L}T];{I|L}YDAY{M(Oxidation (M))|F}K[{I|L}T];{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKVY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SK{I|L}VYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}SKVYV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}VKYV{M(Oxidation (M))|F} 5.9225;5.5036;5.3482;5.3268;5.3233;5.3019;5.0239;4.9293;4.9079;4.605 -;-;-;-;-;-;-;-;-;- 4942 NaN NaN 472146.1 NaN 10779 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14004 62.578 NaN 2025700 35 0 470390 0.261 + 9347 HPSDIEVDLL 10 107 569.292957382282 1136.571361831364 2 569.2930908203125 MULTI HCD FTMS 0 0 0 14001 721417 0.6255950042030903 1 -0.035984039306640625 3 Unmodified _HPSDIEVDLL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 85.27202061508552 0.0013652993904470648 2 EVD{I|L}{I|L} 5 5 70.177 0 0 6.1745 0 0 549.2543202130875 0 549.2543202130875 0 31.989700043360187 0 0 0 1.805462187404089 0 1.4163865622122673 0 + EVD{I|L}{I|L} 6.1745 + + 1334 NaN NaN 399023.4 NaN 10780 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14005 62.581 NaN 2630300 35 0 154420 0.261 + 35481 YYFEGIKQTF 10 115 648.3188964490598 1294.6232399649195 2 648.3191528320312 MULTI HCD FTMS 0 0 0 14001 687336.3125 0.19986856784275045 -5 0.15052413940429688 4 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 151.47984550603806 1.6769878081458435E-07 2 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 109.13 0 0 8.4296 8.4296 91.994 0 0 0 3.40743145471194 3.40743145471194 3.40743145471194 9.164539485499262 0 2.6989700043360187 2 1.0994850021680094 0 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YEG{I|L}KQT{M(Oxidation (M))|F};{M(Oxidation (M))|F}YYEG{I|L}KQT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]EYG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[{I|L}V]TNQT{M(Oxidation (M))|F} 8.4296;7.7217;6.9024;6.1945;6.075;5.9939;5.9313;5.8019;5.4333;5.3146 +;-;-;-;-;-;-;-;-;- + 12643 NaN NaN 489944.6 NaN 10781 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14006 62.585 NaN 787490 35 0 117850 0.263 + 8324 GYASRFIVI 9 69 513.2926213851013 1024.5706898370024 2 513.2927856445312 MULTI HCD FTMS 0 0 0 14001 286907 0.838718759726294 1 -0.035984039306640625 5 Unmodified _GYASRFIVI_ ENSG00000153574|ENST00000283646|RPIA 51.629811660486645 0.02929079705179888 2 [YG]AV[SG]{M(Oxidation (M))|F}{I|L}V 9 3 63.183 0 0 6.1668 0 0 0 128.0723567566802 128.0723567566802 45.99153133413289 0 0 0 0 2.305462187404089 1.6989700043360187 0.3807196863200844 0 [YG]AV[SG]{M(Oxidation (M))|F}{I|L}V 6.1668 - 238 NaN NaN 220276.9 NaN 10782 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14007 62.588 NaN 1076200 35 0 51396 0.261 + 4527 EYLENALKL 9 105 546.800378121946 1091.5862033106919 2 547.2836303710938 MULTI HCD FTMS 0 0 0 14001 58961.3359375 0.09461233350372715 7 -0.2031097412109375 6 Unmodified _EYLENALKL_ ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 41.95555342248728 0.056367691549927025 2 [YT]KD{I|L}DP{I|L}K 9 7 + 70.078 0 0 6.4198 6.4198 87.208 0 0 0 13.552659518797938 6.435078169319297 6.435078169319297 6.435078169319297 0 0.805462187404089 1.2218487496163564 1.024227503252014 0 [YT]KD{I|L}DP{I|L}K;[YT]KD{I|L}DPK{I|L};[YT]KD{I|L}D{I|L}PK;[YT]DK{I|L}DP{I|L}K;[YE]SK{I|L}DP{I|L}K;[YT]V[SG]{I|L}DP{I|L}K;[YT]DK{I|L}DPK{I|L};[YT]DK{I|L}D{I|L}PK;[YE]SK{I|L}DPK{I|L};[YT]V[SG]{I|L}DPK{I|L} 6.4198;5.8303;5.7795;5.5037;5.1783;5.1392;4.9142;4.8634;4.5888;4.5497 -;-;-;-;-;-;-;-;-;- 5864 NaN NaN 269784.5 NaN 10783 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14008 62.591 NaN 535740 35 0 78276 0.262 + 18281 MPDVDLHL 8 63 470.23384817272665 938.4531434122533 2 470.233642578125 MULTI HCD FTMS 0 0 0 14001 175712.3125 0.1910280717253623 -7 0.20613861083984375 7 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 74.42276476219924 0.02458962149020947 2 MPDVD{I|L}H{I|L} 8 0 + 83.216 0 0 8.8674 8.8674 97.145 0 0 0 59.059392591248766 8.098943791441968 8.098943791441968 34.06657045704675 0 2.298455006504028 1.3979400086720375 0.28872548999643577 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L} 8.8674;5.2373 +;+ + 227 + NaN NaN 167143.4 NaN 10784 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14009 62.595 NaN 795870 35 0 91951 0.261 + 7006 FPWSGKVKDIL 11 62 430.579768915012 1288.717477345236 3 430.5799865722656 MULTI HCD FTMS 0 0 0 14001 113554.890625 0.657571729252665 1 -0.035984039306640625 8 Unmodified _FPWSGKVKDIL_ ENSG00000004700|ENST00000444129|RECQL;RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant 20.410884301107757 0.2792417076485638 2 WPE 3 10 29.693 0 0 2.3041 0 0 858.5152455060562 0 858.5152455060562 0 4.916440611282624 0 0 0 0.3494850021680094 0 0 0 WPE 2.3041 - 20 NaN NaN 201917.8 NaN 10785 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14010 62.598 NaN 221830 35 0 33970 0.261 + -1 FFSFCTMW 8 48 563.2305819659182 1124.4466109986363 2 563.230712890625 MULTI HCD FTMS 0 0 0 14001 57945.3046875 0.0764999899746528 13 -0.36569976806640625 9 Carbamidomethyl (C) _FFSFC(Carbamidomethyl (C))TMW_ REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|125|2|anti-sense 14.581692164780916 0.48650662947107914 2 {I|L}EAD{M(Oxidation (M))|F}E 6 -1 49.117 0 0 4.3681 0 0 402.11824233222814 0 402.11824233222814 0 42.8977386751122 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}EAD{M(Oxidation (M))|F}E 4.3681 - 40 NaN NaN 129539.8 NaN 10786 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14011 62.601 NaN 189990 35 0 13841 0.261 + -1 NYAACKYSGKD 11 48 638.7851171664643 1275.5556813997284 2 638.785400390625 MULTI HCD FTMS 0 0 0 14001 65112.5703125 0.5325525459286458 7 -0.2031097412109375 10 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 20.41453444215458 0.279209903849948 2 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VYY 8 -1 53.365 0 0 4.1837 0 0 0 265.13007532291255 265.13007532291255 46.37517525248825 0 0 0 0 1 1.6989700043360187 1 0 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VYY 4.1837 - 65 + NaN NaN 117759 NaN 10787 3222 14001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14013 62.606 NaN 388670 35 0 48554 0.327 + 11554 IYSQTYFRF 9 73 612.8062435664747 1223.5979341997493 2 612.8060302734375 MULTI HCD FTMS 0 0 0 14012 174626.84375 0.07970009064149396 14 -0.3718376159667969 1 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 84.5221896805406 0.004669506596793478 2 {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 95.072 0 0 7.7699 7.7699 91.679 0 0 0 75.60788741577753 9.009461452434238 9.009461452434238 9.208187539523749 0 2.274227503252014 2 0.4247425010840047 0 + + {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}YS[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 7.7699;7.0173;6.3328 +;-;+ + 415 + NaN NaN 158010.5 NaN 10788 3223 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14014 62.611 NaN 237080 35 0 17649 0.261 -1 FPAGYMYPSM 10 70 598.2437640565032 1194.4729751798063 2 598.244140625 MULTI HCD FTMS 0 0 0 14012 31330.30078125 0.15191541043367435 40 -0.9842681884765625 2 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 14.838274106304384 0.3723198072575719 2 C(Carbamidomethyl (C))Y[PS]{M(Oxidation (M))|F} 5 -1 26.58 0 0 2.2253 0 0 522.261034080275 0 522.261034080275 0 13.877268672201453 0 0 0 0.8252574989159953 0 0 0 C(Carbamidomethyl (C))Y[PS]{M(Oxidation (M))|F} 2.2253 - 98 NaN NaN 125969.8 NaN 10789 3223 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14015 62.614 NaN 454060 35 0 22598 0.261 + 28024 TFTRTTHSL 9 80 532.280812199639 1062.5470714660778 2 532.268310546875 MULTI HCD FTMS 0 0 0 14012 19445.28515625 0.5595881254738182 2 -0.05914306640625 3 Unmodified _TFTRTTHSL_ REV__ENSG00000273777|ENST00000614924|CEACAM20;REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20;REV__nc|ENSG00000273777|Q6UY09-3|CEACAM20;REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20;REV__nc|ENSG00000273777|Q6UY09-5|CEACAM20 14.838274106304384 0.23215694253501695 2 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 -1 42.237 0 0 3.975 0 0 165.10318873159082 0 165.10318873159082 0 29.04901959985743 0 0 0 0 0 0.75 0 T{M(Oxidation (M))|F}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.975 - 370 + NaN NaN 157885.7 NaN 10790 3223 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14016 62.617 NaN 338040 35 0 28040 0.262 -1 YYAIMVTMFF 10 74 439.86801532194954 1316.5822165660486 3 439.86767578125 MULTI HCD FTMS 0 0 0 14012 16943.685546875 0.2697206289061324 -1 0.035984039306640625 4 2 Oxidation (M) _YYAIM(Oxidation (M))VTM(Oxidation (M))FF_ ENSG00000205060|ENST00000378509|SLC35B4;nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4 6.1918466704503565 0.44252927588099017 2 {[YD]|[{M(Oxidation (M))|F}M]}SP 4 -1 32.652 0 0 2.48 0 0 0 851.384444711178 851.384444711178 0.08864383480215565 0 0 0 0 0 2 0.5484550065040282 0 {[YD]|[{M(Oxidation (M))|F}M]}SP 2.48 - 84 NaN NaN 134429.8 NaN 10791 3223 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14017 62.621 NaN 231160 35 0 22721 0.261 -1 YMAYMICQFF 10 73 450.18530740328066 1347.534092810042 3 450.5194396972656 MULTI HCD FTMS 0 0 0 14012 8521.4423828125 0.0874832892659741 -7 0.21265029907226562 5 2 Oxidation (M) _YM(Oxidation (M))AYM(Oxidation (M))ICQFF_ ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 2.0860074813731053 0.46426213543441425 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.0838 0 0 1182.4550350481263 0 1182.4550350481263 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0838 + + 24 + NaN NaN 131802.1 NaN 10792 3223 14012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14019 62.626 NaN 1056100 35 0 106210 0.326 + 34187 YPDINFNRL 9 86 576.2958267514911 1150.577100569782 2 576.2960815429688 MULTI HCD FTMS 0 0 0 14018 609167.6875 0.951634835283319 3 -0.09850692749023438 1 Unmodified _YPDINFNRL_ ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-2|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-5|PARG 128.93241758739586 0.0006697181619526092 2 YPD{I|L}N{M(Oxidation (M))|F}NR{I|L} 9 0 + 107.9 0 0 9.3781 9.3781 92.724 0 0 0 79.37076236157729 7.816658315635081 7.816658315635081 8.974315640635595 0 2.690614065464281 1.6989700043360187 0 1.416386562212267 + + YPD{I|L}N{M(Oxidation (M))|F}NR{I|L};YP{I|L}DN{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}{I|L}[RN];YP{I|L}DGG{M(Oxidation (M))|F}NR{I|L};YP{I|L}DN{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}GGR{I|L};YP{I|L}DN{M(Oxidation (M))|F}{I|L}[RN];YPD{I|L}GG{M(Oxidation (M))|F}{I|L}[RN] 9.3781;8.5982;8.5778;8.5778;8.5274;7.7978;7.7978;7.7813;7.7474;7.727 +;-;-;-;-;-;-;-;-;- + 1370 + NaN NaN 256928.1 NaN 10793 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14020 62.63 NaN 815060 35 0 210380 0.261 + 26096 SPHYQEWIL 9 66 586.7902648966975 1171.565976860195 2 586.7904663085938 MULTI HCD FTMS 0 0 0 14018 491994.65625 0.6830933513781159 3 -0.09850692749023438 2 Unmodified _SPHYQEWIL_ ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 34.40172386719151 0.0910440009062557 2 TTEW{I|L}{I|L} 6 5 60.904 0 0 5.1985 0 0 410.19394609336825 0 410.19394609336825 0 48.05584714187489 0 0 0 1.25 0 0.4247425010840047 0 TTEW{I|L}{I|L} 5.1985 - 251 NaN NaN 214879.1 NaN 10794 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14021 62.634 NaN 395560 35 0 36508 0.261 -1 MPRENVMIY 9 69 584.7768290565057 NaN 0 584.7952270507812 PEAK HCD FTMS 0 0 0 14018 32384.162109375 1 0 0 3 Oxidation (M) _M(Oxidation (M))PRENVMIY_ ENST00000428865.2_1_6:74405214-74405695:-|nuORF 15.847184025352803 0.21527282152051216 2 MQDRV{M(Oxidation (M))|F} 6 -1 34.307 0 0 2.9384 0 0 113.04863385404822 275.1072176568969 388.1558515109451 0 0 0 0 0 0.3807196863200844 0 0.7742275032520141 0.28872548999643577 MQDRV{M(Oxidation (M))|F} 2.9384 - 249 + NaN NaN 147015.4 NaN 10795 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14022 62.637 NaN 335560 35 0 36439 0.261 -1 KYMDVQFDF 9 51 604.7681496085214 1207.5217462838427 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14018 194577.15625 0.04370945351489637 83 -2.194232940673828 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 32.037481411007896 0.10189719824197178 2 {M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 47.467 0 0 3.9309 0 0 280.105760642775 0 280.105760642775 0 38.51419501945209 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.9309 - 127 NaN NaN 135052.5 NaN 10796 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14023 62.64 NaN 588360 35 0 204460 0.264 + 28591 TQAQAAPF 8 33 417.2113005007544 NaN 0 417.2195129394531 PEAK HCD FTMS 0 0 0 14018 19839.162109375 0.6212607022529946 -3 0.07520294189453125 5 Unmodified _TQAQAAPF_ ENSG00000197081|ENST00000356956|IGF2R;IGF2R-PPAP2A|1|fusion 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 176398.8 NaN 10797 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14024 62.644 NaN 300870 35 0 35069 0.261 -1 WLSGPLCVMY 10 54 621.2884025285667 1240.5622521239334 2 621.2728271484375 MULTI HCD FTMS 0 0 0 14018 43216.17578125 0.47696761074572364 9 -0.2546539306640625 6 Carbamidomethyl (C),Oxidation (M) _WLSGPLC(Carbamidomethyl (C))VM(Oxidation (M))Y_ ENSG00000187918|ENST00000641930|OR51I2 7.289230182591677 0.43672065049472153 2 [W{I|L}]E 3 -1 30.686 0 0 2.4736 0 0 0 809.3129976861936 809.3129976861936 22.793774815719203 0 0 0 0 0.5 1.5228787452803376 0 0 [W{I|L}]E 2.4736 - 61 + NaN NaN 134744.6 NaN 10798 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14025 62.647 NaN 302370 35 0 18609 0.262 + 18335 MPGLRDPLL 9 77 506.2861883204165 1010.557823707633 2 506.2866516113281 MULTI HCD FTMS 0 0 0 14018 33985.7578125 0.5743039537766177 -3 0.07520294189453125 7 Unmodified _MPGLRDPLL_ ENST00000178638.7_1_15:63618224-63618410:-|nuORF 14.405379775768559 0.2358970535022398 2 MP 2 7 20.969 0 0 2.075 0 0 0 779.4423112382902 779.4423112382902 4.286662482156341 0 0 0 0 0 0 0 0 + MP 2.075 + + 119 + NaN NaN 136889.8 NaN 10799 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14026 62.65 NaN 298200 35 0 23441 0.261 + -1 NAVPAMTYS 9 67 485.2229700826131 NaN 0 485.2392272949219 PEAK HCD FTMS 0 0 0 14018 7825.12646484375 0.9545756538537414 1 -0.03957366943359375 8 Oxidation (M) _NAVPAM(Oxidation (M))TYS_ REV__ENSG00000069702|ENST00000212355|TGFBR3;REV__ENST00000532540.5_1_1:92149298-92327033:-|nuORF;REV__nc|ENSG00000069702|Q03167-2|TGFBR3 7.289230182591677 0.2599242500475609 2 PD{I|L}D{I|L} 5 -1 18.589 0 0 1.9195 0 0 147.00443366813573 265.13080774478755 412.1352414129233 0 0 0 0 0 0 0 0.3807196863200844 0 PD{I|L}D{I|L} 1.9195 - 73 + NaN NaN 131870.1 NaN 10800 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14027 62.654 NaN 266650 35 0 13763 0.261 + -1 NYAACKYSGKD 11 57 638.7851171664643 1275.5556813997284 2 638.7852783203125 MULTI HCD FTMS 0 0 0 14018 74064.9140625 0.6057733300753844 9 -0.2546539306640625 9 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 20.41453444215458 0.279209903849948 2 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VYY 8 -1 49.87 0 0 3.9097 0 0 0 265.1302584283813 265.1302584283813 42.880325230808154 0 0 0 0 1 1.6989700043360187 1 0 [YN]A{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VYY 3.9097 - 129 + NaN NaN 130451.4 NaN 10801 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14028 62.657 NaN 290010 35 0 33844 0.263 -1 AYSPAIQMF 9 64 522.2467980486612 1042.4790431641222 2 522.2468872070312 MULTI HCD FTMS 0 0 0 14018 31553.26953125 0.5148163906855727 4 -0.11798477172851562 10 Oxidation (M) _AYSPAIQM(Oxidation (M))F_ ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 37.97399986684836 0.07464525285885698 2 {[{M(Oxidation (M))|F}D]|MM}QV{I|L}Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 {[{M(Oxidation (M))|F}D]|MM}QV{I|L} + + 25.464 1.872 0.3108 2.4426 2.4426 59.87 0 0 0 0 10.528871982441359 0 0 0 0.805462187404089 0 0 0.3252574989159953 {[{M(Oxidation (M))|F}D]|MM}QV{I|L}Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4426 - 143 + NaN NaN 128978.8 NaN 10802 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14029 62.66 NaN 206820 35 0 29418 0.261 + 17634 LYYDRVHVVF 10 53 437.567803114808 1309.681579944624 3 437.5679626464844 MULTI HCD FTMS 0 0 0 14018 11333.068359375 0.11507192864400559 3 -0.09850692749023438 11 Unmodified _LYYDRVHVVF_ ENST00000472127.1_1_3:42672642-42674322:+|nuORF 15.738622578938676 0.3638982514236938 2 {I|L}Y 2 8 37.563 0 0 2.8681 0 0 0 1030.5102983739596 1030.5102983739596 21.989700043360187 0 0 0 0 0.2614393726401688 1.3979400086720375 0 0 + {I|L}Y 2.8681 + + 27 + NaN NaN 112754.3 NaN 10803 3224 14018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14031 62.665 NaN 1498700 35 0 235590 0.327 + 5185 FFDAELSQM 9 84 552.2393087556661 1102.4640645781321 2 552.2395629882812 MULTI HCD FTMS 0 0 0 14030 680029.5 0.12274484187179208 16 -0.4032096862792969 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 96.834 3.7236 1.2659 8.7834 8.7834 68.48 0 0 0 0 63.12185567340295 0 0 0 3.2302046884880937 0 1.7856668758921828 0.6989700043360187 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.7834 + + 1733 + NaN NaN 317522.7 NaN 10804 3225 14030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14032 62.67 NaN 679390 35 0 80921 0.261 + 19275 NLPEEYEL 8 90 503.7402436273097 NaN 0 503.7403564453125 PEAK HCD FTMS 0 0 0 14030 60697.1484375 0.43721783448150425 1 -0.02281951904296875 2 Unmodified _NLPEEYEL_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 30.636539890814138 0.37819715561078354 2 EY 2 6 16.524 0 0 1.6434 0 0 131.09424756947254 579.2408541315061 710.3351017009786 0 0 0 0 0 0.555462187404089 0 0 0 + EY 1.6434 + + 47 + NaN NaN 196711.1 NaN 10805 3225 14030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14033 62.673 NaN 187500 35 0 51246 0.261 + 16310 LRALKSRRQ 9 62 564.359602940374 NaN 0 564.3588256835938 PEAK HCD FTMS 0 0 0 14030 50714.9765625 0.3716862240156711 -6 0.183929443359375 3 Unmodified _LRALKSRRQ_ ENSG00000081377|ENST00000375241|CDC14B;nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B 1.6526216038709556 0.28723846860855273 2 D 1 9 6.9897 0 0 0.62037 0 0 295.39195972274325 713.2651461236936 1008.6571058464369 0 0 0 0 0 0 0 0 0 D 0.62037 - 8 + NaN NaN 118596.1 NaN 10806 3225 14030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14034 62.676 NaN 216120 35 0 38152 0.262 + -1 CEPSSDES 8 40 455.6602783391966 NaN 0 455.66033935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))EPSSDES_ REV__ENSG00000119969|ENST00000348459|HELLS;REV__ENST00000475263.1_1_10:96356750-96361376:+|nuORF;REV__nc|ENSG00000119969|Q9NRZ9-2|HELLS;REV__nc|ENSG00000119969|Q9NRZ9-3|HELLS;REV__nc|ENSG00000119969|Q9NRZ9-5|HELLS;REV__nc|ENSG00000119969|Q9NRZ9-6|HELLS;REV__TBC1D12-HELLS|1|fusion 2.302733041254933 0.38822285293237185 2 S 1 -1 4.6041 0 0 0.50633 0 0 679.4568348992933 139.79416834049064 819.2510032397839 0 0 0 0 0 0 0 0 0 S 0.50633 + + 3 + NaN NaN 123197 NaN 10807 3225 14030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14035 62.68 NaN 144570 35 0 9941.7 0.261 + 12670 KWFFQKLRF 9 54 433.916547316514 1298.727812549742 3 433.873046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KWFFQKLRF_ ENSG00000131469|ENST00000253788|RPL27 7.608950283845883 0.29333554423920943 2 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.1923 0 0 1133.6487242702483 0 1133.6487242702483 0 10 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1923 + + 7 + NaN NaN 116266.5 NaN 10808 3225 14030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14036 62.683 NaN 197110 35 0 10477 0.261 + 12906 KYGIQMPAF 9 69 527.7721713386893 1053.5297897441785 2 527.773681640625 MULTI HCD FTMS 0 0 0 14030 51704.7109375 0.7774874135015981 1 -0.02281951904296875 6 Unmodified _KYGIQMPAF_ ENSG00000140575|ENST00000268182|IQGAP1 16.942295170755138 0.21397866736869717 2 M[PA]{M(Oxidation (M))|F} 4 5 25.177 0 0 2.3898 0 0 589.321580955275 0 589.321580955275 0 0.4845500650402812 0 0 0 1.1989700043360187 0 0 0 + M[PA]{M(Oxidation (M))|F} 2.3898 + + 66 NaN NaN 138395 NaN 10809 3225 14030 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14038 62.688 NaN 3656800 35 0 1171200 0.327 + 24715 RYLTVATVF 9 61 535.3056100150868 1068.5966670969735 2 535.3060302734375 MULTI HCD FTMS 0 0 0 14037 2347847.25 0.45324317750315873 2 -0.055591583251953125 1 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 51.629811660486645 0.02929079705179888 2 VTA[VP]ATV{M(Oxidation (M))|F} 9 4 56.362 0 0 5.2744 0 0 165.07955310250912 0 165.07955310250912 0 49.371987629411294 0 0 0 0 0 1.3252574989159953 0 VTA[VP]ATV{M(Oxidation (M))|F} 5.2744 - 223 + NaN NaN 547427.4 NaN 10810 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14039 62.692 NaN 1016000 35 0 248790 0.261 + 24878 RYQFLEEAF 9 74 601.795584801941 1201.576616670682 2 601.7959594726562 MULTI HCD FTMS 0 0 0 14037 720232.25 0.40608296545693673 2 -0.055591583251953125 2 Unmodified _RYQFLEEAF_ ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 70.33199760932243 0.0089807860198535 2 EE{I|L}{M(Oxidation (M))|F}[NP]A{M(Oxidation (M))|F} 8 6 60.196 0 0 5.0097 0 0 236.1158161847672 0 236.1158161847672 0 38.52690962719841 0 0 0 1.4247425010840047 0 0.7302046884880937 0.75 EE{I|L}{M(Oxidation (M))|F}[NP]A{M(Oxidation (M))|F} 5.0097 - 580 NaN NaN 232763.4 NaN 10811 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14040 62.696 NaN 694070 35 0 51614 0.261 + 5898 FPDKVAIQL 9 83 515.800393316049 1029.586233698898 2 515.8005981445312 MULTI HCD FTMS 0 0 0 14037 306954.0625 0.4505479444389045 -5 0.13759613037109375 3 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 84.5221896805406 0.004669506596793478 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 73.915 0 0 7.1791 7.1791 89.44 0 0 0 8.349621957594096 8.349621957594096 8.349621957594096 8.349621957594096 0 2.197621246364342 1.3010299956639813 0.28872548999643577 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{M(Oxidation (M))|F}PDKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}[AG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAG[{I|L}A]{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAAAV{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}[AG]{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}[AG]{I|L} 7.1791;6.3681;6.2847;5.4639;5.3469;5.2533;5.0378;4.6508;4.4525;4.3589 +;+;-;-;-;-;-;-;-;- + 728 NaN NaN 188822.4 NaN 10812 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14041 62.699 NaN 549850 35 0 49942 0.261 + 27109 SYMGHFDLL 9 88 549.7498597197784 1097.4851665063568 2 549.750244140625 MULTI HCD FTMS 0 0 0 14037 228665.640625 0.02715851036228507 83 -2.190868377685547 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 43.706 0 0 3.9824 3.9824 84.093 0 0 0 4.449237304209888 25.91469751534994 4.449237304209888 7.653631197717978 0 1.5669015600442577 0 0.7614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DG{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[QS]|[NT]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[DG]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DG[VG][QP]Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QC]|[C(Carbamidomethyl (C))A]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DG{M(Oxidation (M))|F}[TP][QA]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}E[KA]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D[EP]{M(Oxidation (M))|F}AA[KA] 3.9824;3.285;2.693;2.1768;2.1358;1.8353;1.7417;1.2565;1.0432;0.5029 +;-;-;-;-;-;-;-;-;- + 790 NaN NaN 169222.1 NaN 10813 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14042 62.703 NaN 360240 35 0 34326 0.261 + 13337 KYMDVQFDF 9 68 604.7681496085214 1207.5217462838427 2 604.7682495117188 MULTI HCD FTMS 0 0 0 14037 149550.8125 0.03359481869847573 85 -2.2466392517089844 5 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 53.31671820480216 0.026930930319421505 2 QVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 5 51.931 0 0 4.3006 0 0 262.0951405255875 0 262.0951405255875 0 43.43572007681949 0 0 0 1.3494850021680094 0 0 0 QVYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.3006 - 450 NaN NaN 136825.3 NaN 10814 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14043 62.706 NaN 384520 35 0 19283 0.261 -1 APFKFDMEL 9 73 557.2680039090901 1112.5214548849801 2 557.267822265625 MULTI HCD FTMS 0 0 0 14037 87318.6328125 0.10509960779611295 36 -0.8695220947265625 6 Oxidation (M) _APFKFDM(Oxidation (M))EL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 38.61474834105838 0.07170385841135779 2 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 8 -1 49.361 0 0 4.4369 0 0 166.0080507407137 0 166.0080507407137 0 7.661166179470769 0 0 0 0 0 0 0 T{I|L}QPQ{I|L}T{M(Oxidation (M))|F} 4.4369 - 316 + NaN NaN 145875.5 NaN 10815 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14044 62.709 NaN 145930 35 0 30759 0.261 + 19632 NVDPDSVVL 9 42 479.2480633375846 956.4815737419692 2 479.2477722167969 MULTI HCD FTMS 0 0 0 14037 57685.203125 0.14531701981184397 11 -0.2898750305175781 7 Unmodified _NVDPDSVVL_ ENSG00000099860|ENST00000215631|GADD45B 17.11289562659939 0.2125047172822487 2 VV{I|L} 3 6 31.198 0 0 3.2617 0 0 627.2477894513687 0 627.2477894513687 0 14.744237387763093 0 0 0 0.5 0 0 0 + VV{I|L} 3.2617 + + 13 NaN NaN 104322.5 NaN 10816 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14045 62.713 NaN 426490 35 0 61773 0.261 + 2270 DLLLLKDHPF 10 68 404.23251848002667 1209.67572604028 3 404.2326354980469 MULTI HCD FTMS 0 0 0 14037 78618.359375 0.06152117798455248 24 -0.5619850158691406 8 Unmodified _DLLLLKDHPF_ REV__ENSG00000167721|ENST00000301364|TSR1 4.11662792887243 0.45351373858798727 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}V[YG]{I|L}{I|L}{I|L} 9 -1 20.468 0 0 1.692 0 0 0 207.0771425836547 207.0771425836547 7.280156171532187 0 0 0 0 0 0 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}V[YG]{I|L}{I|L}{I|L} 1.692 - 127 + NaN NaN 151418.6 NaN 10817 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14046 62.716 NaN 373760 35 0 71703 0.261 -1 PMVHMLWAAF 10 61 617.7909299983297 NaN 0 617.8070678710938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Oxidation (M) _PM(Oxidation (M))VHM(Oxidation (M))LWAAF_ ENSG00000185246|ENST00000355765|PRPF39;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENST00000554785.1_1_14:45579308-45583868:+|nuORF;nc|ENSG00000185246|Q86UA1-2|PRPF39 4.3292370932331545 0.3364790620948225 2 A 1 -1 6.9897 0 0 0.56662 0 0 165.08063919243165 994.4363497369749 1159.5169889294066 0 0 0 0 0 0 0 0 0 A 0.56662 + + 6 + NaN NaN 137953.2 NaN 10818 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14047 62.719 NaN 324390 35 0 32609 0.261 + -1 MDWMYMMT 8 60 578.694758958125 1155.37496498305 2 578.695556640625 MULTI HCD FTMS 0 0 0 14037 21379.166015625 0.09505927228799348 17 -0.4225921630859375 10 3 Oxidation (M) _M(Oxidation (M))DWM(Oxidation (M))YM(Oxidation (M))MT_ REV__ENST00000285667.3_1_21:15753633-15753711:-|nuORF 0.6903765706972694 0.5409681170271811 2 {I|L} 1 -1 6.9897 0 0 0.60497 0 0 131.9099070241694 907.3614849623569 1039.2713919865264 0 0 0 0 0 0 0 0 0 {I|L} 0.60497 - 5 + NaN NaN 135051.6 NaN 10819 3226 14037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14049 62.724 NaN 2593300 35 0 255640 0.327 + 10974 IYDSVKVYF 9 121 567.296899611243 1132.579246289286 2 567.2796020507812 MULTI HCD FTMS 0 0 0 14048 106063.5234375 0.07707646979367323 12 -0.2989997863769531 1 Unmodified _IYDSVKVYF_ ENSG00000075415|ENST00000552981|SLC25A3;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3 41.95555342248728 0.056367691549927025 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT 8 6 61.51 0 0 5.431 0 0 0 128.10644128488676 128.10644128488676 -3.4887885044030966 0 -3.4887885044030966 0 0 0 2 2.1947638809191465 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT 5.431 - 4540 NaN NaN 508324 NaN 10820 3227 14048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14050 62.729 NaN 2032700 35 0 175150 0.261 + 20026 NYIGLINRI 9 96 538.3163769983624 1074.6182010635248 2 538.31640625 MULTI HCD FTMS 0 0 0 14048 768045.25 0.15078926066766257 10 -0.25376129150390625 2 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 131.26759243768294 0.0005280990274065272 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 92.498 0 0 8.6076 8.6076 92.893 0 0 0 22.281381439366186 14.973024840566467 14.973024840566467 9.208187539523749 0 2.610924374808178 1.6989700043360187 0 2.1140078085766096 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}NR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}GGR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}[RN]{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A][TA]{I|L}NR{I|L} 8.6076;7.7507;7.0142;4.4719;3.3758;3.2038;1.6577 +;-;-;-;-;-;- + 1116 NaN NaN 402420.1 NaN 10821 3227 14048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14051 62.732 NaN 279040 35 0 35408 0.261 + 26778 SYGKINILL 9 50 510.8079929300991 1019.6014329269982 2 510.807861328125 MULTI HCD FTMS 0 0 0 14048 185867.171875 0.4835532137846437 3 -0.07519912719726562 3 Unmodified _SYGKINILL_ ENSG00000112249|ENST00000369162|ASCC3 29.84058131909904 0.11198220037953927 2 S{I|L}N{I|L}{I|L}{I|L} 6 3 47.44 0 0 4.6528 0 0 348.17952162910314 0 348.17952162910314 0 34.25250945692483 0 0 0 0.4247425010840047 0 0 0.3807196863200844 S{I|L}N{I|L}{I|L}{I|L} 4.6528 - 167 NaN NaN 131113.1 NaN 10822 3227 14048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14052 62.735 NaN 185260 35 0 11780 0.261 + 18336 MPGRVEPIL 9 57 506.2861883204165 1010.557823707633 2 506.2862548828125 MULTI HCD FTMS 0 0 0 14048 59177.30078125 1 0 0 4 Unmodified _MPGRVEPIL_ ENSG00000142686|ENST00000270815|C1orf216 8.155526934196011 0.2891920862272901 2 MP 2 7 20.969 0 0 2.075 0 0 0 779.4418429010374 779.4418429010374 4.771212547196626 0 0 0 0 0 0 0 0 + MP 2.075 + + 43 + NaN NaN 114871.6 NaN 10823 3227 14048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14053 62.739 NaN 153700 35 0 8759 0.261 -1 RTAGTICLETF 11 39 634.8214721679688 NaN 0 634.8214721679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _RTAGTIC(Carbamidomethyl (C))LETF_ ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2;nc|ENSG00000103342|P15170-2|GSPT1;nc|ENSG00000103342|P15170|GSPT1 2.498486711656943 0.3350326561941647 2 TQT 3 -1 21.198 0 0 1.6736 0 0 165.07873881319853 768.3700087175971 933.4487475307956 0 0 0 0 0 0.5 0 0 0 TQT 1.6736 - 15 + NaN NaN 116628.1 NaN 10824 3227 14048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14055 62.744 NaN 6063900 35 0 356540 0.327 + 35482 YYFEGIKQTF 10 130 648.3188964490598 1294.6232399649195 2 648.319091796875 MULTI HCD FTMS 0 0 0 14054 2954427.75 0.8591096271919717 1 -0.029571533203125 1 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 208.35403274145148 1.4852445385915178E-23 2 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 127.25 0 0 9.8292 9.8292 95.514 0 0 0 6.738321384702729 6.738321384702729 6.738321384702729 12.051794385463623 0 3.6549471895720984 2 2.635151878060192 0.9436726795685342 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K{[SA]|[TG]}A{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};{M(Oxidation (M))|F}YYEG{I|L}KQT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YEG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[{M(Oxidation (M))|F}T]Q 9.8292;8.8983;7.5052;7.4378;6.9015;6.8742;6.8058;6.7299;6.594;6.4451 +;-;-;-;-;-;-;-;-;- + 32545 + NaN NaN 1015970.7 NaN 10825 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14056 62.748 NaN 1547600 35 0 244300 0.264 + 18282 MPDVDLHL 8 79 470.23384817272665 938.4531434122533 2 470.2337951660156 MULTI HCD FTMS 0 0 0 14054 548054.5 0.5958250326675746 -1 0.01947784423828125 2 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 MPDVD{I|L}H{I|L} 8 0 + 90.641 0 0 9.6586 9.6586 97.408 0 0 0 42.795000083553205 4.9168929071461775 4.9168929071461775 26.918607065747352 0 2.353917193908117 1.5228787452803376 0.6747425010840047 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DV]PMD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DV]PDM{I|L}H{I|L};[DP]VMD{I|L}H{I|L};[DP]VDM{I|L}H{I|L};[DV]PD{I|L}MH{I|L};[DV]PD{I|L}HM{I|L};[H{I|L}]D[DV]PM{I|L} 9.6586;6.7902;5.9557;5.8075;5.4229;5.1673;4.6345;3.941;3.3683;3.1716 +;+;-;-;-;-;-;-;-;- + 457 + NaN NaN 316107.6 NaN 10826 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14057 62.752 NaN 1115300 35 0 78682 0.261 + 4528 EYLENALKL 9 106 546.800378121946 1091.5862033106919 2 547.2835693359375 MULTI HCD FTMS 0 0 0 14054 19595.3515625 0.03144368945641363 13 -0.324798583984375 3 Unmodified _EYLENALKL_ ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 31.26834338654808 0.10542797264966089 2 [YT]KD{I|L}DP{I|L}K 9 7 + 61.57 0 0 5.6404 5.6404 83.467 0 0 0 8.187339429602346 -1.4580483954864079 -1.4580483954864079 0.31234684152074976 0 0.5941876774005248 1 1.0044321917401078 0 [YT]KD{I|L}DP{I|L}K;[YT]KD{I|L}D{I|L}PK;[YT]KD{I|L}DPK{I|L};[YT]V[SG]{I|L}DP{I|L}K;[YT]V[SG]{I|L}D{I|L}PK;[KT]YD{I|L}DP{I|L}K;[KT]YD{I|L}D{I|L}PK;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}SV{[CA]|SS}K;[YT]V[SG]{I|L}DPK{I|L};[KT]YD{I|L}DPK{I|L} 5.6404;5.6118;4.8948;4.2453;4.2167;4.184;4.1554;3.9283;3.4997;3.4384 -;-;-;-;-;-;-;-;-;- 3260 NaN NaN 260816.2 NaN 10827 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14058 62.755 NaN 634610 35 0 45637 0.261 + 289 AFMKGVFTF 9 74 532.2678798482494 1062.5212067632988 2 532.26806640625 MULTI HCD FTMS 0 0 0 14054 181048.84375 0.43102393761957 -3 0.07841110229492188 4 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 85.64151623876279 0.004640175941193596 2 A{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 3 66.943 0 0 6.3004 0 0 147.07340510489877 0 147.07340510489877 0 53.13055110109673 0 0 0 2.473197507588033 0 1.6989700043360187 0 A{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 6.3004 - 287 + NaN NaN 181931.7 NaN 10828 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14059 62.758 NaN 281610 35 0 34738 0.261 + 11555 IYSQTYFRF 9 57 612.8062435664747 1223.5979341997493 2 612.8063354492188 MULTI HCD FTMS 0 0 0 14054 158894.046875 0.07251960618644171 19 -0.4381256103515625 5 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 67.08073823543168 0.010032840856489532 2 {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 99.078 0 0 8.0973 8.0973 92.189 0 0 0 82.62456261857125 7.632192780232785 7.632192780232785 9.208187539523749 0 2.322682509756042 2 0.4247425010840047 0 + + {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}YS[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 8.0973;7.3447;6.0056 +;-;+ + 218 + NaN NaN 128785.6 NaN 10829 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14060 62.762 NaN 218390 35 0 24956 0.261 + 11162 IYISTLKTEF 10 59 607.8370144742638 1213.6594760153275 2 607.837158203125 MULTI HCD FTMS 0 0 0 14054 118292.5234375 0.6696537424017687 -1 0.01947784423828125 6 Unmodified _IYISTLKTEF_ ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 74.7717668357584 0.011931216566250815 2 [Y{I|L}]{I|L}ST{I|L}KTE{M(Oxidation (M))|F} 10 0 + 101.5 0 0 8.3631 8.3631 97.306 0 0 0 13.191650903716678 88.66857080709542 13.191650903716678 55.579707712982994 0 2.8494850021680094 1.6989700043360187 1.3441876774005248 0 + + [Y{I|L}]{I|L}ST{I|L}KTE{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HK][HK]E{M(Oxidation (M))|F} 8.3631;3.7836 +;- + 184 NaN NaN 123534.8 NaN 10830 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14061 62.765 NaN 167330 35 0 14034 0.261 + -1 NYAACKYSGKD 11 50 638.7851171664643 1275.5556813997284 2 638.7857055664062 MULTI HCD FTMS 0 0 0 14054 40474.1015625 0.3310357082792969 13 -0.324798583984375 7 Carbamidomethyl (C) _NYAAC(Carbamidomethyl (C))KYSGKD_ REV__ENSG00000064309|ENST00000531738|CDON;REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF;REV__nc|ENSG00000064309|Q4KMG0|CDON 15.248480904072842 0.3242218977034194 2 [YN]A 3 -1 36.695 0 0 2.8768 0 0 0 924.3897322632628 924.3897322632628 24.018637558036673 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [YN]A 2.8768 + + 35 NaN NaN 115764.4 NaN 10831 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14062 62.768 NaN 255060 35 0 33132 0.264 + -1 HQYIKVFCD 9 61 403.8620004431229 NaN 0 403.55364990234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _HQYIKVFC(Carbamidomethyl (C))D_ REV__ENSG00000151475|ENST00000281154|SLC25A31 5.296884461304476 0.2695788793730278 2 {I|L} 1 -1 6.9897 0 0 0.86752 0 0 371.4691658258958 318.1333101861938 689.6024760120896 0 0 0 0 0 0 0 0 0 {I|L} 0.86752 + + 7 + NaN NaN 128163.4 NaN 10832 3228 14054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14064 62.773 NaN 2427800 35 0 212660 0.326 + 35923 YYTKGFALL 9 103 538.294891612464 1074.5752302917278 2 538.294921875 MULTI HCD FTMS 0 0 0 14063 668325.125 0.914042246195231 2 -0.052288055419921875 1 Unmodified _YYTKGFALL_ ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 82.5293158979368 0.005033931517079822 2 [YN]{I|L}G{I|L}{I|L}NR 8 7 55.632 0 0 5.1771 0 0 0 128.02083167805884 128.02083167805884 -1.9973302050217256 0 -1.9973302050217256 0 0 0 1.5228787452803376 0 2.151023442440469 [YN]{I|L}G{I|L}{I|L}NR 5.1771 - 2048 NaN NaN 453753.2 NaN 10833 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14065 62.778 NaN 796860 35 0 63642 0.261 + 34188 YPDINFNRL 9 81 576.2958267514911 1150.577100569782 2 576.2958984375 MULTI HCD FTMS 0 0 0 14063 271349.25 0.42389871315687955 8 -0.2047119140625 2 Unmodified _YPDINFNRL_ ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-2|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-5|PARG 93.16586880292088 0.00444300900000894 2 YPD{I|L}N{M(Oxidation (M))|F}NR{I|L} 9 0 + 100.57 0 0 8.7408 8.7408 93.055 0 0 0 78.72241220664947 7.1919646325935815 7.1919646325935815 9.208187539523749 0 2.2856668758921828 2 0 0.9119543704721594 + + YPD{I|L}N{M(Oxidation (M))|F}NR{I|L};YPD{I|L}N{M(Oxidation (M))|F}GGR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}NR{I|L};YPD{I|L}GG{M(Oxidation (M))|F}GGR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N{M(Oxidation (M))|F}NR{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}N{M(Oxidation (M))|F}NR{I|L};[DP]Y{I|L}GG{M(Oxidation (M))|F}NR{I|L};[DP]{I|L}YN{M(Oxidation (M))|F}NR{I|L};[Y{I|L}][DP]N{M(Oxidation (M))|F}NR{I|L} 8.7408;7.9405;7.9405;7.144;6.0064;5.2061;3.6805;2.8802;2.6805;2.5275 +;-;-;-;+;-;-;-;-;- + 832 + NaN NaN 211334.5 NaN 10834 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14066 62.781 NaN 1034700 35 0 133090 0.261 + 9348 HPSDIEVDLL 10 95 569.292957382282 1136.571361831364 2 569.7817993164062 MULTI HCD FTMS 0 0 0 14063 217405.09375 0.3277817140271437 5 -0.12987136840820312 3 Unmodified _HPSDIEVDLL_ B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion 34.40172386719151 0.19398797222092762 2 NY[HV]VD{I|L}{I|L} 8 6 50.112 0 0 4.4091 0 0 165.07864577461095 0 165.07864577461095 0 20.190775249321078 0 0 0 1.1747425010840047 0 0 0.6505149978319906 NY[HV]VD{I|L}{I|L} 4.4091 - 1304 NaN NaN 242735.3 NaN 10835 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14067 62.784 NaN 541580 35 0 42541 0.261 + 6724 FPQDRVFML 9 85 584.7947551416197 NaN 0 584.794921875 PEAK HCD FTMS 0 0 0 14063 246848.03125 0.5710833948760993 -3 0.08516311645507812 4 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 80.6760300276096 0.0027682388075221274 2 PQDRV{M(Oxidation (M))|F} 6 3 62.414 0 0 5.3456 0 0 147.0693325811115 275.10713413570096 422.17646671681246 0 0 0 0 0 2.6237125054200234 0 0.6549471895720984 0.3252574989159953 + PQDRV{M(Oxidation (M))|F} 5.3456 + + 626 + NaN NaN 163841.3 NaN 10836 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14068 62.788 NaN 274570 35 0 48581 0.261 + 16650 LWFGGDHDLL 10 47 586.7902648966975 1171.565976860195 2 586.7907104492188 MULTI HCD FTMS 0 0 0 14063 125699.8515625 0.1745237103305628 8 -0.2047119140625 5 Unmodified _LWFGGDHDLL_ REV__ENSG00000105612|ENST00000222219|DNASE2;REV__ENST00000586547.1_1_19:12989181-12989643:-|nuORF 6.723162845929126 0.4397169348982109 2 TT[WE]{I|L}{I|L} 6 -1 30.406 0 0 2.5953 0 0 410.1958180158219 0 410.1958180158219 0 29.436974992327123 0 0 0 0.5 0 0 0 TT[WE]{I|L}{I|L} 2.5953 - 23 NaN NaN 130230.7 NaN 10837 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14069 62.791 NaN 540100 35 0 34698 0.261 + 24767 RYPAIIYNI 9 75 561.8190903025442 1121.6236276718882 2 561.8195190429688 MULTI HCD FTMS 0 0 0 14063 157125.078125 0.6570818106959745 -9 0.2556610107421875 6 Unmodified _RYPAIIYNI_ ENSG00000121073|ENST00000240333|SLC35B1;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;nc|ENSG00000121073|P78383-2|SLC35B1 49.93300154707207 0.03166451819912738 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YN{I|L} 9 5 + 59.843 0 0 5.3354 5.3354 87.436 0 0 0 10.915149811213496 48.71645960868548 10.915149811213496 9.208187539523749 0 1.274227503252014 1.6989700043360187 0 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YN{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YGG{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}{I|L}[YN] 5.3354;4.5144;2.9063 -;-;- 300 NaN NaN 173641 NaN 10838 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14070 62.794 NaN 557980 35 0 104280 0.261 + 19418 NPISTVTEL 9 71 487.26376812524785 972.5129833172957 2 487.2637634277344 MULTI HCD FTMS 0 0 0 14063 261324.71875 0.6446445011936004 -2 0.04904937744140625 7 Unmodified _NPISTVTEL_ ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4 62.57269311338072 0.013982455292112035 2 {[TV]|[{I|L}S]}[VP]{[QS]|[NT]}TE{I|L} 9 5 + 45.492 0 0 4.6778 4.6778 84.342 0 0 0 1.2076993590986973 29.54551130067358 1.2076993590986973 6.089446454446232 0 0.8807196863200843 1.3010299956639813 1.2302046884880937 0 {[TV]|[{I|L}S]}[VP]{[QS]|[NT]}TE{I|L};{[QN]|[E{I|L}]|[KN]}G[VG]GVTE{I|L};{[ET]|[MV]}[KP]GVTE{I|L};[VP]{[TV]|[{I|L}S]}{[QS]|[NT]}TE{I|L};{[ET]|[MV]}{I|L}[H{I|L}]T{M(Oxidation (M))|F}{I|L} 4.6778;4.0516;3.7709;3.4397;2.2739 -;-;-;-;- 227 NaN NaN 172601.8 NaN 10839 3229 14063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14072 62.799 NaN 1246300 35 0 138570 0.327 + 5186 FFDAELSQM 9 98 552.2393087556661 1102.4640645781321 2 552.2393798828125 MULTI HCD FTMS 0 0 0 14071 413467.8125 0.07463064655928643 21 -0.4578056335449219 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 86.26 3.7236 1.2659 7.8243 7.8243 67.12 0 0 0 0 60.77073881651795 0 0 0 2.9916440611282624 0 1.5585456211725204 0.7059771852360797 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 7.8243 + + 1290 + NaN NaN 282870.6 NaN 10840 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14073 62.804 NaN 182050 35 0 115100 0.261 + 30352 VLGLKFFK 8 39 476.3065685841408 NaN 0 476.30657958984375 PEAK HCD FTMS 0 0 0 14071 117778.265625 0.37855081171526433 17 -0.3824043273925781 2 Unmodified _VLGLKFFK_ REV__ENST00000297540.4_1_5:125961755-125961854:+|nuORF 0.7936320650641473 0.38822285293237185 2 R 1 -1 5.4846 0 0 0.57696 0 0 580.379145613791 211.09736047916252 791.4765060929535 0 0 0 0 0 0 0 0 0 R 0.57696 - 4 + NaN NaN 120494.2 NaN 10841 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14074 62.807 NaN 257970 35 0 12100 0.261 + 33295 YFPLFPPSF 9 64 557.7850168145038 NaN 0 557.7693481445312 PEAK HCD FTMS 0 0 0 14071 11252.9560546875 0.3897339323828263 2 -0.045562744140625 3 Unmodified _YFPLFPPSF_ REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|77|3|anti-sense 4.75600775471527 0.27219989241163056 2 E{M(Oxidation (M))|F} 2 -1 14.464 0 0 1.2989 0 0 132.1287698038588 702.3263241793596 834.4550939832184 0 0 0 0 0 0 0 0.3494850021680094 0 E{M(Oxidation (M))|F} 1.2989 - 126 + NaN NaN 134520.1 NaN 10842 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14075 62.811 NaN 353410 35 0 104380 0.263 + 26582 SVSHVSAF 8 42 417.2113005007544 NaN 0 417.2196044921875 PEAK HCD FTMS 0 0 0 14071 6006.25 0.18808491368411936 2 -0.045562744140625 4 Unmodified _SVSHVSAF_ REV__ENSG00000081870|ENST00000194214|IFT25;REV__ENST00000489675.1_1_1:54387326-54394129:-|nuORF 2.577480529830294 0.38822285293237185 2 {I|L} 1 -1 2.4743 0 0 0.29724 0 0 545.2134812731902 171.08876978092033 716.3022510541105 0 0 0 0 0 0 0 0 0 {I|L} 0.29724 - 2 + NaN NaN 139413.9 NaN 10843 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14076 62.814 NaN 163470 35 0 14842 0.261 + 8325 GYASRFIVI 9 48 513.2926213851013 1024.5706898370024 2 513.2925415039062 MULTI HCD FTMS 0 0 0 14071 32054.62109375 0.09370566785490175 9 -0.2238006591796875 5 Unmodified _GYASRFIVI_ ENSG00000153574|ENST00000283646|RPIA 5.731851221503515 0.3075653528928475 2 V{I|L} 2 7 25.969 0 0 2.5346 0 0 794.4074717206921 0 794.4074717206921 0 7.552725051033061 0 0 0 0.5 0 0 0 + V{I|L} 2.5346 + + 17 NaN NaN 112340.4 NaN 10844 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14077 62.817 NaN 130550 35 0 14302 0.261 + -1 DQFNQGWFCF 10 48 450.18530740328066 1347.534092810042 3 450.1849365234375 MULTI HCD FTMS 0 0 0 14071 60842.52734375 0.3919447938589653 6 -0.15254592895507812 6 Carbamidomethyl (C) _DQFNQGWFC(Carbamidomethyl (C))F_ REV__ENST00000515743.5_1_4:10086146-10093179:-|nuORF 0.776531954647913 0.4711933975711956 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2608 0 0 1182.4551418596498 0 1182.4551418596498 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2608 + + 6 + NaN NaN 115625 NaN 10845 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14078 62.821 NaN 270690 35 0 25187 0.261 -1 EYLIDEKTAC 10 53 621.2884025285667 1240.5622521239334 2 621.27392578125 MULTI HCD FTMS 0 0 0 14071 15014.263671875 0.16570918970085227 13 -0.311279296875 7 Carbamidomethyl (C) _EYLIDEKTAC(Carbamidomethyl (C))_ ENSG00000198650|ENST00000355962|TAT 10.073929032068715 0.4168838835836452 2 [YE]{I|L} 3 -1 17.205 0 0 1.3869 0 0 0 832.3492330474671 832.3492330474671 7.680285681044625 0 0 0 0 0 0 0.8252574989159953 0 [YE]{I|L} 1.3869 + + 75 NaN NaN 128979.8 NaN 10846 3230 14071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14080 62.825 NaN 2691300 35 0 815670 0.326 + 24716 RYLTVATVF 9 72 535.3056100150868 1068.5966670969735 2 535.3057861328125 MULTI HCD FTMS 0 0 0 14079 1584386.75 0.30585996808944993 7 -0.16193771362304688 1 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 51.629811660486645 0.02929079705179888 2 [Y{I|L}]R{[TV]|[{I|L}S]}ATV{M(Oxidation (M))|F} 9 2 + 67.558 0 0 6.3222 6.3222 90.93 0 0 0 7.125299705980197 49.090475125574855 7.125299705980197 13.45098040014257 0 2.4247425010840047 1.2218487496163564 1 0 [Y{I|L}]R{[TV]|[{I|L}S]}ATV{M(Oxidation (M))|F};[Y{I|L}]RG[{I|L}T]TV{M(Oxidation (M))|F};[NP][KP][VP]ATV{M(Oxidation (M))|F};[NP][KP]G[{I|L}P]TV{M(Oxidation (M))|F};[NP][KP][VP]AA[Y{I|L}];[NP][KP]G[{I|L}P]A[Y{I|L}] 6.3222;5.0634;4.0139;3.4343;1.2076;0.8847 -;-;-;-;-;- 463 NaN NaN 486876.9 NaN 10847 3231 14079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14081 62.83 NaN 1899900 35 0 312860 0.261 + 25706 SIWPNSPEAPT 11 105 599.7909989893483 1197.5674450454965 2 599.8086547851562 MULTI HCD FTMS 0 0 0 14079 159359.171875 0.937428605883151 2 -0.0548095703125 2 Unmodified _SIWPNSPEAPT_ REV__ENSG00000182732|ENST00000553525|RGS6;REV__nc|ENSG00000182732|P49758-12|RGS6;REV__nc|ENSG00000182732|P49758-13|RGS6;REV__nc|ENSG00000182732|P49758-14|RGS6;REV__nc|ENSG00000182732|P49758-15|RGS6;REV__nc|ENSG00000182732|P49758-16|RGS6;REV__nc|ENSG00000182732|P49758-2|RGS6;REV__nc|ENSG00000182732|P49758-5|RGS6;REV__nc|ENSG00000182732|P49758-8|RGS6;REV__nc|ENSG00000182732|P49758|RGS6 16.149105407346934 0.31637472687818013 2 YY{I|L}ND{I|L}ER 8 -1 64.798 0 0 5.4108 0 0 0 128.0343696033889 128.0343696033889 7.823492804882534 0 0 0 0 0 2 0.8882104921644451 1.8851518780601924 YY{I|L}ND{I|L}ER 5.4108 - 1355 NaN NaN 379162.1 NaN 10848 3231 14079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14082 62.833 NaN 613670 35 0 221790 0.261 -1 0 74 526.2908246563375 525.2835481897374 1 527.29248046875 MULTI HCD FTMS 0 0 0 14079 189608.21875 0.5034230904632956 -8 0.21941375732421875 3 NaN NaN 2 W{[TV]|[{I|L}S]} 3 -1 17.447 0 0 3.3215 0 0 121.07749850145969 0 121.07749850145969 0 9.375306316958502 0 0 0 0 0 0.6989700043360187 0 W{[TV]|[{I|L}S]} 3.3215 - 42 + NaN NaN 185028.5 NaN 10849 3231 14079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14083 62.837 NaN 271770 35 0 18411 0.261 + 16881 LYFESVRTF 9 63 581.3008228624323 1160.5870927916644 2 581.3019409179688 MULTI HCD FTMS 0 0 0 14079 52592.14453125 0.7196714490500998 1 -0.0194244384765625 4 Unmodified _LYFESVRTF_ ENSG00000155957|ENST00000358230|TMBIM4 33.4449034751529 0.0954363425218424 2 [Y{I|L}]{M(Oxidation (M))|F}E[VS]RT{M(Oxidation (M))|F} 9 0 + 57.289 0 0 4.9362 4.9362 90.198 0 0 0 41.09096401634203 7.816658315635081 7.816658315635081 25.589519489197755 0 1.8684151806525389 2 0.3252574989159953 0 + + [Y{I|L}]{M(Oxidation (M))|F}E[VS]RT{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}E[WK][Y{I|L}] 4.9362;2.7313 +;- + 111 + NaN NaN 129735.4 NaN 10850 3231 14079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14084 62.84 NaN 135990 35 0 7638.3 0.261 + -1 NLFVWGML 8 55 498.25538684461304 994.4962207560261 2 498.25537109375 MULTI HCD FTMS 0 0 0 14079 46718.5390625 0.7846510796381797 -3 0.08185958862304688 5 Oxidation (M) _NLFVWGM(Oxidation (M))L_ REV__ENST00000264954.4_1_4:7062504-7062588:-|nuORF 5.760428011301431 0.5334459684533844 2 N[{I|L}P]{[WT]|[RM]}T[YT] 8 -1 + 13.645 0 0 1.3721 1.3721 86.242 0 0 0 10.546218740408905 3.979400086720375 3.979400086720375 13.645162531850874 0 0 0 0 0 N[{I|L}P]{[WT]|[RM]}T[YT] 1.3721 - 12 + NaN NaN 109404.7 NaN 10851 3231 14079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14086 62.845 NaN 742930 35 0 61235 0.327 + 5899 FPDKVAIQL 9 82 515.800393316049 1029.586233698898 2 515.8006591796875 MULTI HCD FTMS 0 0 0 14085 647802.3125 0.9508458624802982 1 -0.0353851318359375 1 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 87.25819977447905 0.004597812622239197 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 76.57 0 0 7.4369 7.4369 89.935 0 0 0 17.129843661361406 16.478174818886373 16.478174818886373 8.45098040014257 0 1.9749073637206092 1.3010299956639813 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}[AG]{I|L};[DP]K{M(Oxidation (M))|F}VA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA[AG]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]{M(Oxidation (M))|F}KVA{I|L}Q{I|L};{M(Oxidation (M))|F}P{I|L}[QT]A{I|L}Q{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L};[DP]K{M(Oxidation (M))|F}VAQ{I|L}{I|L} 7.4369;6.6161;6.5426;5.7732;5.7218;5.6021;5.5111;5.2321;5.0771;4.9524 +;-;-;-;-;-;-;-;-;- + 708 NaN NaN 203358.2 NaN 10852 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14087 62.849 NaN 422870 35 0 38312 0.261 + 27110 SYMGHFDLL 9 79 549.7498597197784 1097.4851665063568 2 549.7500610351562 MULTI HCD FTMS 0 0 0 14085 244540.90625 0.029044008178232206 89 -2.3251991271972656 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 71.13359017698441 0.008721403657255008 2 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 33.587 0 0 3.0604 0 0 591.2115956037125 0 591.2115956037125 0 16.71260646436231 0 0 0 0.6203715150305281 0 0.7742275032520141 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.0604 + + 186 NaN NaN 156382 NaN 10853 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14088 62.853 NaN 397750 35 0 30595 0.261 -1 KYMDVQFDF 9 52 604.7680784656989 1207.5216039981976 2 604.76806640625 MULTI HCD FTMS 0 0 0 14085 156484 0.06772334543389785 -20 0.5695648193359375 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 38.61474834105838 0.07170385841135779 2 Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 40.802 0 0 3.379 0 0 652.289254742278 0 652.289254742278 0 31.10924374808178 0 0 0 1.3494850021680094 0 1.110924374808178 0 Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.379 + + 130 + NaN NaN 147019.1 NaN 10854 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14089 62.856 NaN 644130 35 0 39526 0.261 + 4660 EYNNIFHTF 9 89 592.7718980721021 1183.529243211004 2 592.7717895507812 MULTI HCD FTMS 0 0 0 14085 111832.046875 0.7927405587489648 1 -0.0353851318359375 4 Unmodified _EYNNIFHTF_ ENST00000545363.6_1_12:9808558-9809281:+|nuORF 32.78568957990786 0.09846250359632436 2 [YE]NN{I|L}{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T] 9 0 + 53.963 0 0 4.5595 4.5595 86.311 0 0 0 32.280156171532184 10.738314437472738 10.738314437472738 9.208187539523749 0 0.3494850021680094 1 0.7614393726401688 0 + + [YE]NN{I|L}{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];[YE]GGN{I|L}{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];[YE]NGG{I|L}{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];MMR[KS]{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];M{[DA]|[EG]}T[KS]{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];[YE]GGGG{I|L}{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];{[{M(Oxidation (M))|F}H]|[RQ]}T{M(Oxidation (M))|F}T[KS]{[DA]|[EG]}M;{[TV]|[{I|L}S]}[DC][KS]{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}T];{[{M(Oxidation (M))|F}H]|[RQ]}[WY][KS]WM;[HT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}T[KS]{[DA]|[EG]}M 4.5595;3.7814;3.7814;3.3727;3.3195;3.0071;1.282;1.2034;0.98898;0.5891 +;-;-;-;-;-;-;-;-;- + 671 + NaN NaN 186532.2 NaN 10855 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14090 62.865 NaN 214820 35 0 52819 0.263 -1 CMVPDCEG 8 44 455.6602783391966 NaN 0 455.6602478027344 PEAK HCD FTMS 0 0 0 14085 42506.87109375 0.30522337336910005 -6 0.1568756103515625 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))MVPDCEG_ ENSG00000102287|ENST00000370328|GABRE;ENST00000486255.1_1_X:151123175-151124345:-|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120400.1 NaN 10856 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14091 62.869 NaN 465160 35 0 26974 0.261 + 11478 IYQKAFDLI 9 79 555.8131834053348 1109.6118138774696 2 556.3145751953125 MULTI HCD FTMS 0 0 0 14085 90589.5546875 0.24717024287157083 -4 0.10128402709960938 6 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 89.40071534611396 0.0045416704840156395 2 {I|L}YQ[KA]{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 79.205 0 0 7.1381 7.1381 87.318 0 0 0 19.775071725447404 3.296896906561031 3.296896906561031 3.296896906561031 0 2.6989700043360187 2 1.555462187404089 0.3807196863200844 + + {I|L}YQ[KA]{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]Q[KA]{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[AG][KA]{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YQVVQ{I|L}T{M(Oxidation (M))|F};[Y{I|L}][AG][KA]{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[KT]PQ{I|L}T{M(Oxidation (M))|F};{I|L}YQ[KP]T{I|L}T{M(Oxidation (M))|F};{I|L}Y[AG]VVQ{I|L}T{M(Oxidation (M))|F};{I|L}YQVV[AG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]Q{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{I|L} 7.1381;6.8409;6.3082;6.1609;6.0111;5.7063;5.5309;5.331;5.331;5.0856 +;+;-;-;-;-;-;-;-;- + 951 + NaN NaN 165581.1 NaN 10857 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14092 62.872 NaN 240450 35 0 53520 0.261 + 4469 EYIPKWEQF 9 53 620.3062372482032 1238.5979215632062 2 620.3076171875 MULTI HCD FTMS 0 0 0 14085 66148.71875 0.6115177767685767 -2 0.045562744140625 7 Unmodified _EYIPKWEQF_ ENSG00000114405|ENST00000462069|C3orf14 41.8396318013385 0.056899836730939755 2 [YE]{I|L} 3 6 43.997 0 0 3.5521 0 0 0 830.3855551904124 830.3855551904124 29.30400924012389 0 0 0 0 0.9247425010840047 1.6989700043360187 0.8807196863200843 0 + [YE]{I|L} 3.5521 + + 54 NaN NaN 118794.4 NaN 10858 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14093 62.875 NaN 215310 35 0 26333 0.264 -1 PALASPPL 8 51 404.2326329083845 NaN 0 404.2326354980469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PALASPPL_ ENSG00000183248|ENST00000618550|PRR36;nc|ENSG00000183248|Q9H6K5-2|PRR36;REV__ENST00000483551.6_1_15:69082366-69082516:-|nuORF;REV__nc|ENSG00000197558|A2VEC9|SSPOP 6.354104778181461 0.38822285293237185 2 {I|L}{I|L}{I|L} 3 -1 8.4164 0 0 1.0436 0 0 257.0987294980152 207.07683740787346 464.1755669058887 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{I|L} 1.0436 - 14 + NaN NaN 121392.7 NaN 10859 3232 14085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14095 62.88 NaN 13428000 35 0 2697800 0.327 + 29089 TYGEIFEKF 9 141 567.2792195549672 1132.5438861767343 2 567.2796630859375 MULTI HCD FTMS 0 0 0 14094 11854680 0.5638204420034025 -5 0.13666915893554688 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 173.68634876852585 1.8204875074637502E-09 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 118.68 0 0 10.479 10.479 96.146 0 0 0 12.830213614809836 12.830213614809836 12.830213614809836 12.830213614809836 0 2.6549471895720984 2 1.716551424848872 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}G{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}K;TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F} 10.479;9.3466;8.3634;7.9507;7.7839;7.5796;7.1955;7.083;7.0012;6.9406 +;-;-;-;-;-;-;-;-;- + 17523 + NaN NaN 861772.3 NaN 10860 3233 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14096 62.885 NaN 1082400 35 0 101390 0.261 + 20027 NYIGLINRI 9 88 538.3163769983624 1074.6182010635248 2 538.3165283203125 MULTI HCD FTMS 0 0 0 14094 444167.15625 0.08720272289138649 16 -0.3503074645996094 2 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 107.1870275148908 0.00340162908551068 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 96.103 0 0 8.943 8.943 93.31 0 0 0 22.551981929696495 16.478174818886373 16.478174818886373 9.208187539523749 0 2.610924374808178 1.5228787452803376 0 1.5713337517843657 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L} 8.943;8.0861;5.4242 +;-;- + 748 NaN NaN 251668.3 NaN 10861 3233 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14097 62.888 NaN 2288200 35 0 887680 0.261 + 30628 VPDHVVWSL 9 92 526.2817979800001 1050.5490430268 2 526.7835693359375 MULTI HCD FTMS 0 0 0 14094 255580.65625 0.12061547156797704 -13 0.3627586364746094 3 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 85.27202061508552 0.004649858145912257 2 {[RE]|[WV]}YVVWS{I|L} 8 3 + 72.657 0 0 6.9161 6.9161 90.808 0 0 0 10.024589445658535 9.445830421822663 9.445830421822663 9.247425010840047 0 1.3807196863200843 1 0.8494850021680094 0 {[RE]|[WV]}YVVWS{I|L};{[RE]|[WV]}YVWVS{I|L};{[RE]|[WV]}YVVWTV;VT{[CT]|[{M(Oxidation (M))|F}G]}{[QN]|[E{I|L}]|[KN]}WS{I|L};{[RE]|[WV]}YVWSV{I|L};{I|L}S{[CT]|[{M(Oxidation (M))|F}G]}{[QN]|[E{I|L}]|[KN]}WS{I|L};VT{[CT]|[{M(Oxidation (M))|F}G]}H[YK]S{I|L};{[RE]|[WV]}YVWVTV;{I|L}S{[CT]|[{M(Oxidation (M))|F}G]}H[YK]S{I|L};{[RE]|[WV]}YVWS{I|L}V 6.9161;6.0358;6.0169;5.9618;5.6357;5.5899;5.2709;5.1367;4.899;4.7366 -;-;-;-;-;-;-;-;-;- 3870 NaN NaN 436805.5 NaN 10862 3233 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14098 62.891 NaN 706870 35 0 152310 0.261 + 29582 VADPYVVIM 9 56 511.76494441039256 1021.5153358875851 2 511.76483154296875 MULTI HCD FTMS 0 0 0 14094 199038.1875 0.3161516752426872 -5 0.13666915893554688 4 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 48.345845343767074 0.03388484103555672 2 {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F} 9 0 + 58.35 0 0 5.7121 5.7121 91.704 0 0 0 46.871987629411294 6.411962188136542 6.411962188136542 28.750612633916997 0 2.4247425010840047 0 0 0 + + {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VY[VP] 5.7121;2.8976 +;- + 57 + NaN NaN 190943.9 NaN 10863 3233 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14099 62.895 NaN 105740 35 0 11996 0.261 + -1 SMGCSDCQCFM 11 37 642.6943359375 NaN 0 642.6943359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C),Oxidation (M) _SMGC(Carbamidomethyl (C))SDCQCFM(Oxidation (M))_ REV__ENSG00000189180|ENST00000432900|ZNF33A;REV__nc|ENSG00000189180|Q06730-3|ZNF33A;REV__nc|ENSG00000189180|Q06730|ZNF33A 0.3070304955306653 0.3412491863730806 2 S 1 -1 2.7642 0 0 0.21539 0 0 659.569555955275 533.7537935846311 1193.323349539906 0 0 0 0 0 0 0 0 0 S 0.21539 + + 3 + NaN NaN 114475.7 NaN 10864 3233 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14100 62.898 NaN 91015 35 0 10479 0.264 + 15740 LPFGHVQF 8 46 472.75461349392316 NaN 0 472.7413330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LPFGHVQF_ ENSG00000243364|ENST00000368409|EFNA4;nc|ENSG00000243364|P52798-2|EFNA4;nc|ENSG00000243364|P52798-3|EFNA4 9.347437153973935 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105119.9 NaN 10865 3233 14094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14102 62.903 NaN 2057500 35 0 126810 0.327 + 35483 YYFEGIKQTF 10 108 648.3188964490598 1294.6232399649195 2 648.3190307617188 MULTI HCD FTMS 0 0 0 14101 906110.9375 0.2634854176786665 7 -0.16535568237304688 1 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 151.47984550603806 1.6769878081458435E-07 2 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 108.45 0 0 8.3772 8.3772 91.914 0 0 0 2.118806617312643 2.118806617312643 2.118806617312643 9.164539485499262 0 2.7302046884880937 2 1.079689690656103 0 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};{M(Oxidation (M))|F}YYEG{I|L}KQT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[{I|L}V]NQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T{[VA]|[{I|L}G]}[VG]QT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}K[AG]T{M(Oxidation (M))|F} 8.3772;7.6693;7.0077;6.2998;6.0869;5.8589;5.7495;5.654;5.5962;5.0416 +;-;-;-;-;-;-;-;-;- + 8109 NaN NaN 401967 NaN 10866 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14103 62.907 NaN 1667100 35 0 182730 0.262 + 20658 PFISEGTTLK 10 101 546.800378121946 1091.5862033106919 2 547.2836303710938 MULTI HCD FTMS 0 0 0 14101 16224.03125 0.02603389884223468 18 -0.3830223083496094 2 Unmodified _PFISEGTTLK_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 26.88365393820708 0.25965138844209146 2 [YT]KD{I|L}D{I|L}PK 9 9 + 64.189 0 0 5.8803 5.8803 85.667 0 0 0 9.6125552476 11.217327760564693 9.6125552476 4.683269204899808 0 0.23965182871044374 1 0.8481362441963329 0 [YT]KD{I|L}D{I|L}PK;[YT]KD{I|L}DP{I|L}K;[YT]KD{I|L}DPK{I|L};[YT]V[SG]{I|L}D{I|L}PK;[KT]YD{I|L}D{I|L}PK;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[SG]{I|L}D{I|L}PK;[YT]V[SG]{I|L}DP{I|L}K;[KT]YD{I|L}DP{I|L}K;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[SG]{I|L}DP{I|L}K;[YT]V[SG]{I|L}DPK{I|L} 5.8803;5.4513;4.8618;4.761;4.5689;4.4995;4.332;4.1399;4.0705;3.7424 -;-;-;-;-;-;-;-;-;- 3526 NaN NaN 348681.4 NaN 10867 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14104 62.911 NaN 1143300 35 0 169980 0.261 + 18283 MPDVDLHL 8 78 470.23384817272665 938.4531434122533 2 470.2338562011719 MULTI HCD FTMS 0 0 0 14101 663428.75 0.7212557448964623 5 -0.12007904052734375 3 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 85.35673624503755 0.01682165142544485 2 MPDVD{I|L}H{I|L} 8 0 + 89.959 0 0 9.5858 9.5858 98.084 0 0 0 63.76078152608656 8.979400086720375 8.979400086720375 39.11954370472159 0 2.329689690656103 1.5228787452803376 0.6307196863200843 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DP]VMD{I|L}H{I|L};[DP]VDM{I|L}H{I|L};[DP]VD[H{I|L}]M{I|L};[DP]VD[H{I|L}]{I|L}M 9.5858;5.4173;4.7813;3.9046;3.4751;1.0001;0.57606 +;+;-;-;-;-;- + 272 + NaN NaN 258872.4 NaN 10868 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14105 62.914 NaN 665080 35 0 88257 0.261 + 2235 DLADYFEKF 9 90 574.2688858494805 1146.523218765761 2 574.2689819335938 MULTI HCD FTMS 0 0 0 14101 288238.28125 0.49497407022499373 -1 0.02277374267578125 4 Unmodified _DLADYFEKF_ tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 43.85829265575387 0.04763305254408404 2 NGR{M(Oxidation (M))|F}{[QS]|[NT]}K{M(Oxidation (M))|F} 8 7 41.578 0 0 3.6265 0 0 164.06290490032967 0 164.06290490032967 0 20.687587626244124 0 0 0 1.8424778212679485 0 0.2742275032520141 0.5796896906561032 NGR{M(Oxidation (M))|F}{[QS]|[NT]}K{M(Oxidation (M))|F} 3.6265 - 599 + NaN NaN 191569 NaN 10869 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14106 62.918 NaN 958920 35 0 57471 0.261 + 290 AFMKGVFTF 9 98 532.2678798482494 1062.5212067632988 2 532.2678833007812 MULTI HCD FTMS 0 0 0 14101 313429.96875 0.746184380415872 3 -0.07484054565429688 5 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 85.64151623876279 0.004640175941193596 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 3 63.008 0 0 5.93 0 0 71.03469723844644 0 71.03469723844644 0 52.550179335456306 0 0 0 2.2302046884880937 0 1.1989700043360187 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.93 - 533 + NaN NaN 234138.5 NaN 10870 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14107 62.921 NaN 564200 35 0 32912 0.261 + 4820 EYVRLVTEF 9 76 578.3054423326572 1154.5963317321143 2 578.3062133789062 MULTI HCD FTMS 0 0 0 14101 113148.9921875 0.5958557883837367 -2 0.05815887451171875 6 Unmodified _EYVRLVTEF_ ENSG00000141101|ENST00000268802|NOB1 69.10491478415734 0.009377850133389008 2 VTE{M(Oxidation (M))|F} 4 5 38.03 0 0 3.2938 0 0 660.36084086473 0 660.36084086473 0 14.894053504650309 0 0 0 1.079689690656103 0 0.7302046884880937 0 + VTE{M(Oxidation (M))|F} 3.2938 + + 106 + NaN NaN 176105.6 NaN 10871 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14108 62.924 NaN 309020 35 0 32446 0.261 + 11556 IYSQTYFRF 9 67 612.8062435664747 1223.5979341997493 2 612.8055419921875 MULTI HCD FTMS 0 0 0 14101 73494.7421875 0.03354316832527061 25 -0.5760154724121094 7 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 45.739877483867886 0.03899552410870734 2 {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 85.143 0 0 6.9584 6.9584 90.199 0 0 0 70.67918449261214 7.632192780232785 7.632192780232785 9.208187539523749 0 1.2302046884880937 1.6989700043360187 0.4247425010840047 0 + + {I|L}YSQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{I|L}YS[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 6.9584;6.2059 +;- + 94 + NaN NaN 134847.6 NaN 10872 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14109 62.928 NaN 547010 35 0 114260 0.261 + -1 ICCSDFNRD 9 61 593.7349837067175 1185.4554144802348 2 593.735595703125 MULTI HCD FTMS 0 0 0 14101 161699.03125 0.6358075427151961 -4 0.10372161865234375 8 2 Carbamidomethyl (C) _IC(Carbamidomethyl (C))C(Carbamidomethyl (C))SDFNRD_ REV__ENSG00000123066|ENST00000281928|MED13L 1.4819007175156935 0.3397831423917744 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46265 0 0 62.037525137336225 973.3301408186667 1035.3676659560028 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46265 + + 44 + NaN NaN 176802.4 NaN 10873 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14110 62.931 NaN 192790 35 0 17467 0.261 + -1 RYFTMMCGTI 10 53 640.2833858620484 1278.5522187908966 2 640.2845458984375 MULTI HCD FTMS 0 0 0 14101 61142.15625 0.6853777881855598 -4 0.10372161865234375 9 Carbamidomethyl (C) _RYFTMMC(Carbamidomethyl (C))GTI_ REV__ENSG00000164466|ENST00000321442|SFXN1;REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF;REV__ENST00000508290.5_1_5:174919260-174936221:+|nuORF;REV__ENST00000513725.1_1_5:174919106-174937211:+|nuORF 16.149105407346934 0.3600587335443843 2 {M(Oxidation (M))|F}NT{I|L} 4 -1 42.735 0 0 3.3425 0 0 785.2972279279312 0 785.2972279279312 0 38.75569708000178 0 0 0 0.8807196863200843 0 0 0.5 {M(Oxidation (M))|F}NT{I|L} 3.3425 - 26 NaN NaN 120050.2 NaN 10874 3234 14101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14112 62.936 NaN 530080 35 0 43731 0.327 + 6725 FPQDRVFML 9 82 584.7947551416197 NaN 0 584.7945556640625 PEAK HCD FTMS 0 0 0 14111 301066.96875 0.6965190110213063 3 -0.0516357421875 1 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 63.227496030279354 0.019321093200456756 2 MQDRV{M(Oxidation (M))|F} 6 4 48.338 0 0 4.14 0 0 113.08698392091749 275.10605798892817 388.19304190984565 0 0 0 0 0 2.579689690656103 0 0.7742275032520141 0.28872548999643577 MQDRV{M(Oxidation (M))|F} 4.14 - 678 + NaN NaN 165265.8 NaN 10875 3235 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14113 62.94 NaN 670860 35 0 31684 0.261 + 24768 RYPAIIYNI 9 88 561.8190903025442 1121.6236276718882 2 561.8192138671875 MULTI HCD FTMS 0 0 0 14111 223864.453125 0.9361793926544092 -3 0.09087753295898438 2 Unmodified _RYPAIIYNI_ ENSG00000121073|ENST00000240333|SLC35B1;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;nc|ENSG00000121073|P78383-2|SLC35B1 49.93300154707207 0.03166451819912738 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YN{I|L} 9 5 + 50.563 0 0 4.508 4.508 86.23 0 0 0 5.882737018425495 22.146837232059262 5.882737018425495 9.208187539523749 0 0.8494850021680094 0.958607314841775 0.3252574989159953 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YN{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}YGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y[{I|L}P]{I|L}YN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y[{I|L}P]{I|L}YGG{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T[RV]{I|L}{I|L}[YN];{[QV]|[N{I|L}]|[RA]|[KV]}Y[{I|L}P]{I|L}{I|L}[YN];[YN]{I|L}[{I|L}P]RV[{M(Oxidation (M))|F}T];{[QV]|[N{I|L}]|[RA]|[KV]}HM[KP]RN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y[{I|L}P]R{[{M(Oxidation (M))|F}C]|[YS]}P;{[QV]|[N{I|L}]|[RA]|[KV]}Y[{I|L}P]RV[{M(Oxidation (M))|F}T] 4.508;3.6871;3.3854;2.5644;2.0106;1.178;0.66291;0.60227;0.19185;0.15112 -;-;-;-;-;-;-;-;-;- 833 NaN NaN 194920 NaN 10876 3235 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14114 62.944 NaN 675780 35 0 124940 0.263 + 3280 EEFDFHVRW 9 58 422.1962425315606 1263.5668981948818 3 422.1962890625 MULTI HCD FTMS 0 0 0 14111 115789.765625 0.31644775302322026 -5 0.13644027709960938 3 Unmodified _EEFDFHVRW_ ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 5.783430956126388 0.3071743400961265 2 Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F}[HC] 6 5 28.333 0 0 2.2423 0 0 468.250780174025 0 468.250780174025 0 13.728721920568248 0 0 0 0.3807196863200844 0 0 0 Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F}[HC] 2.2423 - 25 NaN NaN 184739.6 NaN 10877 3235 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14115 62.947 NaN 416520 35 0 38889 0.261 + 16651 LWFGGDHDLL 10 56 586.7902648966975 1171.565976860195 2 586.7896728515625 MULTI HCD FTMS 0 0 0 14111 14368.79296875 0.01994986494181408 14 -0.2948150634765625 4 Unmodified _LWFGGDHDLL_ REV__ENSG00000105612|ENST00000222219|DNASE2;REV__ENST00000586547.1_1_19:12989181-12989643:-|nuORF 10.823927491677226 0.4098686510432541 2 W{I|L}{I|L} 3 -1 28.188 0 0 2.406 0 0 741.3082752912125 0 741.3082752912125 0 23.58349385648225 0 0 0 0.5 0 0 0 W{I|L}{I|L} 2.406 - 25 NaN NaN 152471.6 NaN 10878 3235 14111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14117 62.952 NaN 1530100 35 0 438430 0.326 + 24717 RYLTVATVF 9 68 535.3056100150868 1068.5966670969735 2 535.3055419921875 MULTI HCD FTMS 0 0 0 14116 924374.875 0.17844713089792583 12 -0.25594329833984375 1 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 43.77239144664712 0.04802738721622131 2 ATV{M(Oxidation (M))|F} 4 5 55.918 0 0 5.2328 0 0 632.3660360370466 0 632.3660360370466 0 40.00962840146599 0 0 0 2 0 1 0 + ATV{M(Oxidation (M))|F} 5.2328 + + 346 NaN NaN 321216.5 NaN 10879 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14118 62.956 NaN 249100 35 0 15372 0.261 + 8016 GFVTMIHTEM 10 86 583.273609786231 1164.5326666392618 2 583.2742309570312 MULTI HCD FTMS 0 0 0 14116 189778.625 0.5196198346075019 1 -0.0260162353515625 2 Unmodified _GFVTMIHTEM_ REV__ENSG00000156395|ENST00000369701|SORCS3 18.1463463914782 0.3413772152514074 2 WM{M(Oxidation (M))|F} 3 -1 38.94 0 0 3.3438 0 0 682.3696032271557 0 682.3696032271557 0 19.675390846596482 0 0 0 1.274227503252014 0 0 0 WM{M(Oxidation (M))|F} 3.3438 - 116 NaN NaN 126491.3 NaN 10880 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14119 62.96 NaN 426280 35 0 76931 0.262 + 19419 NPISTVTEL 9 71 487.26376812524785 972.5129833172957 2 487.2637634277344 MULTI HCD FTMS 0 0 0 14116 290773.53125 0.7172898105834392 5 -0.1165313720703125 3 Unmodified _NPISTVTEL_ ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4 56.17704186161178 0.022929533404884107 2 [VP]QS{[TV]|[{I|L}S]}TE{I|L} 9 2 + 49.179 0 0 5.0569 5.0569 85.905 0 0 0 3.4337218370150424 28.94569935735241 3.4337218370150424 8.475409843999344 0 1.2614393726401687 0 1.274227503252014 0 [VP]QS{[TV]|[{I|L}S]}TE{I|L};{[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}[VG]TE{I|L};[VP][AG]S{[TV]|[{I|L}S]}TE{I|L};{[ET]|[MV]}[KP][VG]TE{I|L};[DP][KA]{[TV]|[{I|L}S]}TE{I|L};{[TV]|[{I|L}S]}[NP]{[TV]|[{I|L}S]}TE{I|L};{[ET]|[MV]}{I|L}[H{I|L}]T{M(Oxidation (M))|F}{I|L} 5.0569;4.1854;4.1101;3.6133;3.4161;2.9943;2.3956 -;-;-;-;-;-;- 171 NaN NaN 159589.2 NaN 10881 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14120 62.963 NaN 1004600 35 0 102740 0.261 + 5187 FFDAELSQM 9 87 552.2393087556661 1102.4640645781321 2 552.2393188476562 MULTI HCD FTMS 0 0 0 14116 445127.25 0.08034515254716988 27 -0.6384468078613281 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 157.7952019732125 5.857147217999733E-07 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 75.848 0 0 6.8798 6.8798 90.056 0 0 0 4.287158875439914 52.11909891137444 4.287158875439914 9.208187539523749 0 2.368415180652539 0 1.4361818737241734 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{[QS]|[NT]}PY{M(Oxidation (M))|F}AD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAD[Y{I|L}];{[QS]|[NT]}PY{[CP]|[EA]}[YV]{M(Oxidation (M))|F};{[QS]|[NT]}PY[TP][YT]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAAAAD[Y{I|L}] 6.8798;6.0446;3.505;2.4042;2.1491;1.1918;1.0592;0.85163 +;-;-;-;-;-;-;- + 1077 NaN NaN 233927.6 NaN 10882 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14121 62.966 NaN 276660 35 0 47072 0.261 + 25840 SLVPPLLLYI 10 52 564.359602940374 NaN 0 564.3596801757812 PEAK HCD FTMS 0 0 0 14116 126961.859375 0.9304938561284064 5 -0.1165313720703125 5 Unmodified _SLVPPLLLYI_ REV__OR51L1|p.N290S|1|0.09|ENSG00000176798|chr11:4999851-4999851|A/G|missense_variant 3.944395688203298 0.33680843299986807 2 Y{I|L} 2 -1 10.969 0 0 0.97356 0 0 132.23320060170516 715.3073824518186 847.5405830535237 0 0 0 0 0 0 0 0 0 Y{I|L} 0.97356 + + 13 + NaN NaN 135316.4 NaN 10883 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14122 62.97 NaN 88303 35 0 11087 0.261 + -1 LYCCQQFENAF 11 34 493.8707004907028 NaN 0 494.278076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))C(Carbamidomethyl (C))QQFENAF_ REV__ENSG00000166938|ENST00000319212|DIS3L;REV__ENST00000564909.5_1_15:66585934-66618751:+|nuORF;REV__ENST00000565281.5_1_15:66585934-66615040:+|nuORF;REV__nc|ENSG00000166938|Q8TF46-3|DIS3L;REV__nc|ENSG00000166938|Q8TF46-4|DIS3L 1.4551175022131473 0.3379923941668102 2 A 1 -1 3.0989 0 0 0.31438 0 0 749.6106961700791 162.05658899478752 911.6672851648666 0 0 0 0 0 0 0 0 0 A 0.31438 + + 1 + NaN NaN 101366 NaN 10884 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14123 62.973 NaN 141790 35 0 8100.8 0.261 -1 SCGCSQCNCC 10 60 589.6609680693709 NaN 0 589.2557983398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))GC(Carbamidomethyl (C))SQC(Carbamidomethyl (C))NCC_ ENSG00000204572|ENST00000398531|KRTAP5-10 0 0.34018428902965525 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.5937 0 0 311.9439443849781 715.303463411436 1027.247407796414 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.5937 - 9 + NaN NaN 113081.2 NaN 10885 3236 14116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14125 62.978 NaN 1231300 35 0 202010 0.327 + 25707 SIWPNSPEAPT 11 88 599.7909989893483 1197.5674450454965 2 599.8090209960938 MULTI HCD FTMS 0 0 0 14124 33127.140625 0.1948700466224034 7 -0.14886093139648438 1 Unmodified _SIWPNSPEAPT_ REV__ENSG00000182732|ENST00000553525|RGS6;REV__nc|ENSG00000182732|P49758-12|RGS6;REV__nc|ENSG00000182732|P49758-13|RGS6;REV__nc|ENSG00000182732|P49758-14|RGS6;REV__nc|ENSG00000182732|P49758-15|RGS6;REV__nc|ENSG00000182732|P49758-16|RGS6;REV__nc|ENSG00000182732|P49758-2|RGS6;REV__nc|ENSG00000182732|P49758-5|RGS6;REV__nc|ENSG00000182732|P49758-8|RGS6;REV__nc|ENSG00000182732|P49758|RGS6 11.494710602746466 0.35692862141139436 2 YY{I|L}ND{I|L}ER 8 -1 58.486 0 0 4.8837 0 0 0 128.0348397590018 128.0348397590018 5.305168975722765 0 0 0 0 0 2 0.3054621874040891 1.5356668758921828 YY{I|L}ND{I|L}ER 4.8837 - 755 NaN NaN 278011.9 NaN 10886 3237 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14126 62.982 NaN 510140 35 0 188190 0.264 -1 0 72 427.30263388320066 852.5907148332013 2 427.3025817871094 MULTI HCD FTMS 0 0 0 14124 303919.15625 0.2053137242036636 -22 0.6139602661132812 2 NaN NaN 2 Y 1 -1 13.495 0 0 1.5828 0 0 671.5170739414029 0 671.5170739414029 0 1.2763625255165323 0 0 0 0 0 0 0 Y 1.5828 - 20 + NaN NaN 175448.4 NaN 10887 3237 14124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14128 62.987 NaN 4868900 35 0 1622200 0.327 -1 0 111 526.2908246563375 525.2835481897374 1 526.2817993164062 MULTI HCD FTMS 0 0 0 14127 1931180.25 0.801809258413307 2 -0.045200347900390625 1 NaN NaN 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 3 -1 22.294 0 0 4.2441 0 0 0 136.0652308892093 136.0652308892093 2.443663967357935 0 0 0 0 0 1.0969100130080565 0.3252574989159953 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 4.2441 - 68 NaN NaN 831650.7 NaN 10888 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14129 62.991 NaN 933490 35 0 68838 0.261 + 11479 IYQKAFDLI 9 88 555.8131834053348 1109.6118138774696 2 555.8135375976562 MULTI HCD FTMS 0 0 0 14127 490645.125 0.834673132548631 2 -0.045200347900390625 2 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 118.0683919894846 0.0016252157255221692 2 {I|L}YQKA{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 93.387 0 0 8.4162 8.4162 91.613 0 0 0 59.564155805940246 8.384767769392738 8.384767769392738 8.71092286673715 0 2.774227503252014 2 1.8684151806525389 0.3807196863200844 + + {I|L}YQKA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]QKA{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[AG]KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}][AG]KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}QY{I|L}{I|L};[YQ]{I|L}KA{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}Q{I|L}Y{I|L};[Y{I|L}]QKA{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}{I|L}QY{I|L};[Y{I|L}]Q{[VA]|[{I|L}G]}[AG]Y{I|L}{I|L} 8.4162;7.6311;7.5863;6.8013;5.1666;5.1068;4.816;4.7917;4.6843;4.3368 +;+;-;-;-;-;-;-;-;- + 1214 + NaN NaN 230361.5 NaN 10889 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14130 62.995 NaN 888240 35 0 76877 0.261 + 5900 FPDKVAIQL 9 91 515.800393316049 1029.586233698898 2 515.800537109375 MULTI HCD FTMS 0 0 0 14127 518896.75 0.7616379538502708 7 -0.16203689575195312 3 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 55.23464941255904 0.024247875903973527 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L} 9 0 + 57.022 0 0 5.5384 5.5384 86.332 0 0 0 17.147642715192504 34.165464117141084 17.147642715192504 7.7815125038364386 0 1.5356668758921828 1.3010299956639813 0.2614393726401688 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA{I|L}[AG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKVA[AG]{I|L}{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L};[VP][YQ]VA{I|L}Q{I|L};[YN][{I|L}P]VA{I|L}Q{I|L};[YV][QP]VA{I|L}Q{I|L};[VP][SG]{M(Oxidation (M))|F}VAQ{I|L}{I|L};[Q{I|L}]AQ[{I|L}T]P{M(Oxidation (M))|F}{I|L} 5.5384;4.7826;4.644;3.8882;2.6236;2.4141;2.4141;2.2159;1.8678;1.7606 +;-;-;-;-;-;-;-;-;- + 868 NaN NaN 229872.6 NaN 10890 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14131 62.998 NaN 990910 35 0 130020 0.261 + 29465 TYVENLRLL 9 89 560.8217480351958 1119.6289431371915 2 560.822265625 MULTI HCD FTMS 0 0 0 14127 524705.375 0.4245347116478445 -8 0.18807601928710938 4 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 136.39213081522345 0.00021731600835925866 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 109.81 0 0 9.8076 9.8076 95.054 0 0 0 10.330918867322296 10.330918867322296 10.330918867322296 10.330918867322296 0 2.805462187404089 2 0.9916440611282626 1.579689690656103 + + [YT]VEN{I|L}R{I|L}{I|L};TYVEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};TYVEGG{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]GG{I|L}R{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{I|L}{I|L} 9.8076;8.8849;8.2937;8.0625;5.3236;4.5012;3.9139 +;+;-;-;-;-;- + 533 NaN NaN 240929.5 NaN 10891 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14132 63.002 NaN 435700 35 0 39059 0.261 + 27111 SYMGHFDLL 9 82 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 14127 300886.46875 0.03573614407955278 95 -2.4987945556640625 5 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 85.27202061508552 0.004649858145912257 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 44.051 0 0 4.0138 4.0138 87.705 0 0 0 5.6424927368725974 31.291615863770872 5.6424927368725974 14.604093769761871 0 1.916386562212267 0 0.805462187404089 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F}VE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[ES]|[DT]|[{I|L}C]}HSY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YR]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[ES]|[DT]|[{I|L}C]}H{I|L}{[{M(Oxidation (M))|F}C]|[YS]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[YR]{I|L}{[{M(Oxidation (M))|F}C]|[YS]};{[TV]|[{I|L}S]}[HC][RH]N[MT] 4.0138;2.6831;2.3001;2.044;0.78772;0.42198;0.16588;0.1215 +;-;-;-;-;-;-;- + 419 NaN NaN 152606.2 NaN 10892 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14133 63.005 NaN 311830 35 0 34301 0.261 + 1397 AYQHAFLYI 9 50 563.29064813411 1124.56674333502 2 563.2907104492188 MULTI HCD FTMS 0 0 0 14127 277082.21875 1 0 0 6 Unmodified _AYQHAFLYI_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENST00000477976.5_1_1:880076-889593:-|nuORF 15.847184025352803 0.2234401846867398 2 {I|L}Y{I|L} 3 6 36.198 0 0 3.2188 0 0 717.3228839495104 0 717.3228839495104 0 34.771212547196626 0 0 0 1 0 0 0 + {I|L}Y{I|L} 3.2188 + + 23 NaN NaN 136743 NaN 10893 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14134 63.008 NaN 496660 35 0 36280 0.261 + 31711 VYLDHAGATLF 11 68 603.811535728918 1205.6085185246359 2 603.8120727539062 MULTI HCD FTMS 0 0 0 14127 201408.921875 0.7175255260911977 -3 0.0516357421875 7 Unmodified _VYLDHAGATLF_ ENSG00000075643|ENST00000261326|MOCOS 53.832793166522166 0.0656792923142766 2 [{I|L}T][WP][NS]QT{I|L}{M(Oxidation (M))|F} 10 7 + 40.868 0 0 3.3898 3.3898 88.784 0 0 0 0.4036245867396815 9.172809246458229 0.4036245867396815 31.81872208767465 0 0.8807196863200843 1.5228787452803376 0.75 0 [{I|L}T][WP][NS]QT{I|L}{M(Oxidation (M))|F};[{I|L}T][WP][NS]QV[YV] 3.3898;0.75056 -;- 117 NaN NaN 175174.6 NaN 10894 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14135 63.012 NaN 200340 35 0 36086 0.261 + 4470 EYIPKWEQF 9 53 620.305908203125 NaN 0 620.305908203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _EYIPKWEQF_ ENSG00000114405|ENST00000462069|C3orf14 22.736283301280096 0.1690317064107932 2 {I|L} 1 8 14.732 0 0 1.1894 0 0 833.4079292951186 289.0825289361938 1122.4904582313125 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.1894 + + 14 + NaN NaN 116740.8 NaN 10895 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14136 63.015 NaN 214090 35 0 13958 0.261 + -1 RYFTMMCGTI 10 47 640.2833858620484 1278.5522187908966 2 640.7822875976562 MULTI HCD FTMS 0 0 0 14127 56851.62890625 0.7205112287043735 1 -0.035724639892578125 9 Carbamidomethyl (C) _RYFTMMC(Carbamidomethyl (C))GTI_ REV__ENSG00000164466|ENST00000321442|SFXN1;REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF;REV__ENST00000508290.5_1_5:174919260-174936221:+|nuORF;REV__ENST00000513725.1_1_5:174919106-174937211:+|nuORF 8.155526934196011 0.43213520406898465 2 {M(Oxidation (M))|F}NT{I|L} 4 -1 36.983 0 0 2.8925 0 0 785.2982774865599 0 785.2982774865599 0 31.49797211252192 0 0 0 0.3054621874040891 0 0.5 0 {M(Oxidation (M))|F}NT{I|L} 2.8925 - 15 NaN NaN 128226.7 NaN 10896 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14137 63.018 NaN 156240 35 0 23925 0.264 + 26415 STEPSEISL 9 51 481.73762048879644 NaN 0 481.7372131347656 PEAK HCD FTMS 0 0 0 14127 34083.4765625 0.420046554108271 2 -0.045200347900390625 10 Unmodified _STEPSEISL_ ENSG00000198646|ENST00000359003|NCOA6 37.97399986684836 0.08477284381764581 2 S{I|L}E 3 7 34.169 0 0 3.5539 0 0 131.09786636713517 498.18332849674067 629.2811948638758 0 0 0 0 0 1.4247425010840047 0 0.7614393726401688 0 S{I|L}E 3.5539 - 10 + NaN NaN 112291.1 NaN 10897 3238 14127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14139 63.023 NaN 808290 35 0 42751 0.326 + 13338 KYMDVQFDF 9 85 604.7680784656989 1207.5216039981976 2 604.7679443359375 MULTI HCD FTMS 0 0 0 14138 302440.375 0.13089053187087885 -13 0.335113525390625 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 45.739877483867886 0.03899552410870734 2 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 5 56.917 0 0 4.7135 0 0 262.0951405255875 0 262.0951405255875 0 28.178439902686794 0 0 0 1.8494850021680094 0 0 0.3252574989159953 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7135 - 1978 NaN NaN 211161.2 NaN 10898 3239 14138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14140 63.027 NaN 311960 35 0 86949 0.263 + -1 GCPTCDCR 8 44 456.16219600834273 NaN 0 456.1626281738281 PEAK HCD FTMS 0 0 0 14138 94046.359375 0.6745938321006434 1 -0.0094757080078125 2 Carbamidomethyl (C) _GC(Carbamidomethyl (C))PTCDCR_ REV__ENSG00000130702|ENST00000252999|LAMA5 2.302733041254933 0.38822285293237185 2 Y 1 -1 2.4743 0 0 0.2718 0 0 582.1699292707887 162.0561922662719 744.2261215370605 0 0 0 0 0 0 0 0 0 Y 0.2718 - 2 + NaN NaN 137709 NaN 10899 3239 14138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14142 63.032 NaN 16141000 35 0 3445100 0.327 + 29090 TYGEIFEKF 9 115 567.2792195549672 1132.5438861767343 2 567.27978515625 MULTI HCD FTMS 0 0 0 14141 11951427 0.5684218261236406 2 -0.048603057861328125 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 136.39213081522345 0.00021731600835925866 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 111.91 0 0 9.881 9.881 92.838 0 0 0 8.136582767739853 8.136582767739853 8.136582767739853 8.136582767739853 0 2.6549471895720984 2 1.0387254899964358 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}[VG]T{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YG]ET{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F} 9.881;9.1625;8.1684;7.3312;7.324;6.9846;6.9811;6.8054;6.7743;6.763 +;-;-;-;-;-;-;-;-;- + 10044 + NaN NaN 476213.2 NaN 10900 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14143 63.037 NaN 1664400 35 0 90078 0.261 + 35484 YYFEGIKQTF 10 107 648.3188964490598 1294.6232399649195 2 648.3192749023438 MULTI HCD FTMS 0 0 0 14141 478990.03125 0.1392841463717833 13 -0.2729835510253906 2 Unmodified _YYFEGIKQTF_ ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF 179.28349886687624 4.545700307145465E-16 2 YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F} 10 0 + 116.56 0 0 9.0037 9.0037 95.008 0 0 0 5.025545792377756 5.025545792377756 5.025545792377756 12.659389507179355 0 3.473197507588033 2 2.642159058960253 0.6237125054200234 + + YY{M(Oxidation (M))|F}EG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K[AG]T{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}KTQ{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}KT[AG]{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}[QT]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]K[AG]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YYG{I|L}KQT{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}EG{I|L}K{[NV]|[RG]}Y;YY{M(Oxidation (M))|F}T[TP]KTQ{M(Oxidation (M))|F} 9.0037;8.0259;7.3834;6.917;6.6755;6.5592;6.2091;5.8913;5.7294;5.6849 +;-;-;-;-;-;-;-;-;- + 8272 + NaN NaN 340032.4 NaN 10901 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14144 63.04 NaN 1704000 35 0 308600 0.262 + 6566 FPLDLDVKM 9 110 547.2833450810227 1092.5521372288454 2 547.2835693359375 MULTI HCD FTMS 0 0 0 14141 395414.9375 0.5657427552269583 5 -0.1168365478515625 3 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 90.13494162714682 0.004522430935000059 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 94.813 0 0 8.6782 8.6782 91.19 0 0 0 63.689440351831934 16.478174818886373 16.478174818886373 6.817496819840642 0 2.705112052208703 0 0.5189301784845296 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}PD{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}PD{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N 8.6782;8.0542;7.4321;6.9795;6.8081;6.5471;5.9964;5.7092;5.5442;5.4087 +;-;-;+;-;-;-;-;-;- + 2728 + NaN NaN 357562.5 NaN 10902 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14145 63.044 NaN 1024800 35 0 224990 0.261 + 29583 VADPYVVIM 9 64 511.76494441039256 1021.5153358875851 2 511.76519775390625 MULTI HCD FTMS 0 0 0 14141 375145.84375 0.5958805616730904 2 -0.048603057861328125 4 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 57.47134341890925 0.0211188941628804 2 {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F} 9 0 + 61.603 0 0 6.0305 6.0305 90.269 0 0 0 1.663865622122671 1.663865622122671 1.663865622122671 12.781512503836439 0 2.75 0 0 0 + + {[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}DV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VY[VP];{[VA]|[{I|L}G]}{[ET]|[MV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}DV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[VP];{[VA]|[{I|L}G]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}[MT];{[VA]|[{I|L}G]}{[ET]|[MV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[VP] 6.0305;4.7793;3.216;3.1173;1.9648;0.79611;0.3028 +;-;-;-;-;-;- + 139 + NaN NaN 244048 NaN 10903 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14146 63.047 NaN 964490 35 0 99062 0.261 + 20028 NYIGLINRI 9 97 538.3163769983624 1074.6182010635248 2 538.3161010742188 MULTI HCD FTMS 0 0 0 14141 278268.78125 0.05463212459367339 23 -0.5577163696289062 5 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 131.26759243768294 0.0005280990274065272 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 100.05 0 0 9.3103 9.3103 93.661 0 0 0 28.233563049837485 16.478174818886373 16.478174818886373 9.208187539523749 0 2.610924374808178 1.6989700043360187 0 2.229339555460717 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}NR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}GGR{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A][TA]{I|L}NR{I|L} 9.3103;8.4534;5.2079;4.6713;3.5498;1.5768 +;-;-;-;-;- + 1351 NaN NaN 228270 NaN 10904 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14147 63.05 NaN 348170 35 0 48649 0.261 + 18284 MPDVDLHL 8 53 470.23384817272665 938.4531434122533 2 470.2337646484375 MULTI HCD FTMS 0 0 0 14141 229140.21875 0.24911295924433416 11 -0.22452926635742188 6 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 64.23631603340823 0.039635161348402365 2 MPDVD{I|L}H{I|L} 8 0 + 79.123 0 0 8.4312 8.4312 96.269 0 0 0 58.153434601012606 8.098943791441968 8.098943791441968 28.50711233356286 0 2.353917193908117 1.5228787452803376 0 0 + + MPDVD{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}DVD{I|L}H{I|L};[DP]MVD{I|L}H{I|L};[DP][DV]M{I|L}H{I|L} 8.4312;5.3935;4.4367;2.5801 +;+;-;- + 122 + NaN NaN 142564.1 NaN 10905 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14148 63.054 NaN 489820 35 0 89397 0.261 + 2236 DLADYFEKF 9 96 574.2688858494805 1146.523218765761 2 574.2694091796875 MULTI HCD FTMS 0 0 0 14141 235700.53125 0.40475418740724894 5 -0.1168365478515625 7 Unmodified _DLADYFEKF_ tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}MGE 4 8 50.923 0 0 4.4415 0 0 0 679.3448680676919 679.3448680676919 15.260847058321687 0 0 0 0 1.305462187404089 1.0969100130080565 0.2742275032520141 0 {M(Oxidation (M))|F}MGE 4.4415 - 477 + NaN NaN 168173 NaN 10906 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14149 63.057 NaN 249300 35 0 17361 0.262 + 25940 SPDAKIFCL 9 53 497.2575770540871 992.5006011749742 2 497.2580261230469 MULTI HCD FTMS 0 0 0 14141 96067.390625 0.41696145113644356 -6 0.12955474853515625 8 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 53.40400417844725 0.026808823219830042 2 [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 82.171 0 0 8.2792 8.2792 90.654 0 0 0 6.786662482156345 6.786662482156345 6.786662482156345 6.786662482156345 0 2.305462187404089 1.6989700043360187 0.3252574989159953 0 + + [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L};SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L};[PS]DA[K{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};SP[Y{I|L}][QA]VC{I|L} 8.2792;7.5954;5.7087;3.8697 +;+;-;- + 100 NaN NaN 122458.7 NaN 10907 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14150 63.06 NaN 455330 35 0 35462 0.261 + 32319 VYVDLGGSHVF 11 69 596.8037942801744 1191.5930356271488 2 596.803955078125 MULTI HCD FTMS 0 0 0 14141 73734.640625 0.056449257145285106 -7 0.1523284912109375 9 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 76.82478488871298 0.008712912646854446 2 [YV]VEVGGSHV{M(Oxidation (M))|F} 11 2 + 81.411 0 0 6.8321 6.8321 85.787 0 0 0 1.5764470551545173 1.5764470551545173 1.5764470551545173 1.020599913279625 0 2.7931576817365436 1.6989700043360187 0.5 0 [YV]VEVGGSHV{M(Oxidation (M))|F};[YV]VD{I|L}GGSHV{M(Oxidation (M))|F};[YV]VD{I|L}NSHV{M(Oxidation (M))|F};[YV]D{I|L}VGGSHV{M(Oxidation (M))|F};[YV]DV{I|L}GGSHV{M(Oxidation (M))|F};[YV]VERG[EP]P{M(Oxidation (M))|F};[YV]DV{I|L}NSHV{M(Oxidation (M))|F};[YV][EP]GREPV{M(Oxidation (M))|F};[YV]D[PA]REPV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{I|L}DVP{M(Oxidation (M))|F} 6.8321;6.7465;6.0908;6.0121;5.9264;5.2928;5.2708;4.9781;4.792;4.6682 -;+;-;-;-;-;-;-;-;- + 1184 NaN NaN 178098.5 NaN 10908 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14151 63.063 NaN 94584 35 0 17521 0.262 + -1 PMLECILS 8 42 481.73762048879644 NaN 0 481.7378845214844 PEAK HCD FTMS 0 0 0 14141 33034.9140625 0.40712401482198385 4 -0.094146728515625 10 Carbamidomethyl (C) _PMLEC(Carbamidomethyl (C))ILS_ REV__ENSG00000153827|ENST00000675903|TRIP12;REV__ENST00000479037.5_1_2:230672327-230744801:-|nuORF;REV__nc|ENSG00000153827|Q14669-2|TRIP12;REV__nc|ENSG00000153827|Q14669-3|TRIP12;REV__nc|ENSG00000153827|Q14669-4|TRIP12;REV__nc|ENSG00000153827|Q14669|TRIP12;REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant 4.75600775471527 0.38822285293237185 2 {I|L} 1 -1 10.485 0 0 1.0905 0 0 630.2519610930242 215.10334192447502 845.3553030174992 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0905 + + 3 + NaN NaN 104284.5 NaN 10909 3240 14141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14153 63.068 NaN 376520 35 0 31101 0.327 + 291 AFMKGVFTF 9 63 532.2678798482494 1062.5212067632988 2 532.267578125 MULTI HCD FTMS 0 0 0 14152 155319.53125 0.36977002759014227 10 -0.18872833251953125 1 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 85.64151623876279 0.004640175941193596 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 3 62.127 0 0 5.8472 0 0 71.0382233534868 0 71.0382233534868 0 49.78092914350263 0 0 0 2.305462187404089 0 1.1861818737241734 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}KR{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.8472 - 136 + NaN NaN 160061.2 NaN 10910 3241 14152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14154 63.073 NaN 629270 35 0 63266 0.261 + 12460 KQPEDYFYL 9 87 601.7911579991085 1201.5677630650168 2 601.7960205078125 MULTI HCD FTMS 0 0 0 14152 170856.5625 0.3721818883339292 -7 0.16535568237304688 2 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 26.268140514670165 0.13340543277302316 2 EEA{M(Oxidation (M))|F} 4 7 37.624 0 0 3.1313 0 0 707.3677031058356 0 707.3677031058356 0 7.447026752325158 0 0 0 1.774227503252014 0 0.6694451763165201 0 EEA{M(Oxidation (M))|F} 3.1313 - 312 + NaN NaN 189615.8 NaN 10911 3241 14152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14155 63.076 NaN 646990 35 0 192940 0.263 + 16984 LYIGWDKHYGF 11 47 466.89939401658086 1397.6763526499426 3 466.8990478515625 MULTI HCD FTMS 0 0 0 14152 151469.59375 0.34031020362541037 -3 0.08100128173828125 3 Unmodified _LYIGWDKHYGF_ ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 12.227587767072771 0.3505430386502343 2 {I|L}Y{I|L} 3 8 54.253 0 0 3.8816 0 0 0 1005.4218046941459 1005.4218046941459 47.26280941356464 0 0 0 0 0.805462187404089 2 0 0 + {I|L}Y{I|L} 3.8816 + + 59 + NaN NaN 182660.3 NaN 10912 3241 14152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14157 63.081 NaN 1494700 35 0 276850 0.327 + 6567 FPLDLDVKM 9 97 547.2833450810227 1092.5521372288454 2 547.7709350585938 MULTI HCD FTMS 0 0 0 14156 179523.953125 0.41369705443646376 11 -0.2243804931640625 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 81.653 0 0 7.4736 7.4736 89.884 0 0 0 53.80787072657742 16.478174818886373 16.478174818886373 8.066884185923655 0 2.6861818737241734 0 0 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DV{M(Oxidation (M))|F}Q;{M(Oxidation (M))|F}E[VP]{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DKV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F} 7.4736;6.7353;6.6049;6.4438;5.8766;5.7792;5.4996;5.1511;5.1382;4.8075 +;-;+;-;-;-;-;-;-;- + 2835 + NaN NaN 315437.4 NaN 10913 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14158 63.086 NaN 1295900 35 0 341480 0.261 + 16385 LSFSLRTVF 9 80 535.3056100150868 1068.5966670969735 2 535.3058471679688 MULTI HCD FTMS 0 0 0 14156 465241.84375 0.08981320721298121 18 -0.4273529052734375 2 Unmodified _LSFSLRTVF_ REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF 39.94969957227396 0.06557568441294001 2 ATV{M(Oxidation (M))|F} 4 -1 55.918 0 0 5.2328 0 0 632.3650077458773 0 632.3650077458773 0 31.14719760735794 0 0 0 2 0 1 0 ATV{M(Oxidation (M))|F} 5.2328 - 546 NaN NaN 291714.6 NaN 10914 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14159 63.089 NaN 557010 35 0 100700 0.261 -1 0 76 541.2616757550217 540.2543992884216 1 542.2769775390625 MULTI HCD FTMS 0 0 0 14156 59404.0625 0.18885809469043816 6 -0.12660980224609375 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 3.1448 0 0 375.1754178204513 0 375.1754178204513 0 9.057875029352969 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.1448 - 38 + NaN NaN 180818.9 NaN 10915 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14160 63.092 NaN 718930 35 0 141310 0.263 + 3281 EEFDFHVRW 9 63 422.1962425315606 1263.5668981948818 3 422.19622802734375 MULTI HCD FTMS 0 0 0 14156 210686.375 0.5757955342726998 2 -0.045543670654296875 4 Unmodified _EEFDFHVRW_ ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 3.5870582119611467 0.32382448100160255 2 {M(Oxidation (M))|F}QD{M(Oxidation (M))|F}[HC] 6 6 26.911 0 0 2.1298 0 0 468.24905489999037 0 468.24905489999037 0 12.21848749616356 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QD{M(Oxidation (M))|F}[HC] 2.1298 - 119 NaN NaN 200555.2 NaN 10916 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14161 63.096 NaN 531140 35 0 36960 0.261 -1 MPRENVMIY 9 89 584.77809841362 NaN 0 584.79443359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))PRENVMIY_ ENST00000428865.2_1_6:74405214-74405695:-|nuORF 13.90604991867851 0.22786006501039813 2 MQD[RV]{M(Oxidation (M))|F} 6 -1 25.467 0 0 2.1813 0 0 113.05207194054067 275.1068514459594 388.1589233865001 0 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0.5501648626366046 MQD[RV]{M(Oxidation (M))|F} 2.1813 - 280 + NaN NaN 181216.4 NaN 10917 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14162 63.099 NaN 260190 35 0 22895 0.261 + 11557 IYSQTYFRF 9 60 612.8062435664747 1223.5979341997493 2 612.8062744140625 MULTI HCD FTMS 0 0 0 14156 112015.21875 0.0511240018767262 33 -0.8614845275878906 6 Unmodified _IYSQTYFRF_ ENSG00000121858|ENST00000241261|TNFSF10 40.23920728925047 0.06424668180817725 2 [Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 9 0 + 55.78 0 0 4.5587 4.5587 86.307 0 0 0 38.30584053089659 8.384767769392738 8.384767769392738 9.208187539523749 0 1.4419628234359578 1.6989700043360187 0.4247425010840047 0 + + [Y{I|L}]SQTY{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[Y{I|L}]S[AG]TY{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 4.5587;3.8061 +;- + 106 + NaN NaN 127959.2 NaN 10918 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14163 63.102 NaN 274410 35 0 26394 0.261 -1 YTLQMEQLN 9 62 578.270428545474 1154.526304157748 2 578.2704467773438 MULTI HCD FTMS 0 0 0 14156 62219.23828125 0.4185746069744578 4 -0.08108901977539062 7 Oxidation (M) _YTLQM(Oxidation (M))EQLN_ CON__H-INV:HIT000015463;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000425245.1_1_1:214706446-214706704:+|nuORF;ENST00000504966.2_1_4:145493783-145493942:+|nuORF;ENST00000565278.1_1_16:72763309-72763579:+|nuORF 8.745405648335112 0.2847203663274469 2 {I|L}N 2 -1 20.969 0 0 1.8163 0 0 909.3791860329143 0 909.3791860329143 0 7.156818820794937 0 0 0 0 0 0 0 {I|L}N 1.8163 + + 25 NaN NaN 129586.6 NaN 10919 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14164 63.106 NaN 124030 35 0 11171 0.261 -1 MAEPPRMMDF 10 51 620.7631673309509 1239.5117817287016 2 620.763671875 MULTI HCD FTMS 0 0 0 14156 30868.265625 0.3040847054506453 -8 0.17815780639648438 8 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 10.799506525563784 0.4100970765206026 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 29.897 0 0 2.412 0 0 698.2930775373062 0 698.2930775373062 0 17.93427554967522 0 0 0 0.8494850021680094 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.412 - 16 NaN NaN 113029.5 NaN 10920 3242 14156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14166 63.111 NaN 652380 35 0 89453 0.327 + 5188 FFDAELSQM 9 71 552.2393087556661 1102.4640645781321 2 552.23974609375 MULTI HCD FTMS 0 0 0 14165 249331.84375 0.045004220750270565 34 -0.8877792358398438 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 142.0795815696625 1.719916958814042E-05 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 76.046 0 0 6.8978 6.8978 90.08 0 0 0 4.762036441594191 59.05607390370156 4.762036441594191 9.208187539523749 0 2.110924374808178 0 1.4124379954164592 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}];{[QS]|[NT]}PY{M(Oxidation (M))|F}AD[Y{I|L}];{[QS]|[NT]}PY{M(Oxidation (M))|F}AV[YE];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAV[YE];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAD[Y{I|L}] 6.8978;6.0626;2.0928;1.8041;1.5306;0.84865;0.84509 +;-;-;-;-;-;- + 550 NaN NaN 183262.8 NaN 10921 3243 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14167 63.115 NaN 131850 35 0 19703 0.261 + 21958 QELLQTEL 8 51 487.26376812524785 972.5129833172957 2 487.263427734375 MULTI HCD FTMS 0 0 0 14165 55873.48828125 0.13783057781637 12 -0.24731063842773438 2 Unmodified _QELLQTEL_ REV__ENSG00000131966|ENST00000254286|ACTR10;REV__ENST00000555337.5_1_14:58675802-58697175:+|nuORF 32.30548876998284 0.3297748069446609 2 TE{I|L} 3 -1 35.49 0 0 3.6493 0 0 611.3288441388687 0 611.3288441388687 0 26.90614065464281 0 0 0 0.805462187404089 0 0.4247425010840047 0 TE{I|L} 3.6493 + + 56 NaN NaN 109947.8 NaN 10922 3243 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14168 63.119 NaN 153710 35 0 19486 0.261 + 4274 EVILIDPFHK 10 43 404.2324765250901 1209.6756001754702 3 404.2325134277344 MULTI HCD FTMS 0 0 0 14165 37428.80078125 0.8391996077686746 1 -0.016143798828125 3 Unmodified _EVILIDPFHK_ ENSG00000174748|ENST00000307839|RPL15;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF 2.2527281973983926 0.46337965618007254 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L} 5 5 22.218 0 0 1.8367 0 0 0 639.2889370638742 639.2889370638742 16.020599913279625 0 0 0 0 0 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{I|L} 1.8367 + + 14 + NaN NaN 106728.6 NaN 10923 3243 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14169 63.122 NaN 127730 35 0 18276 0.261 + 35706 YYLDWIHHY 9 59 437.2051263691567 1308.59354970767 3 437.5393371582031 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYLDWIHHY_ ENSG00000172236|ENST00000338844|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;nc|ENSG00000172236|Q15661-2|TPSAB1;PRSS27-TPSB2|1|fusion 8.155526934196011 0.2891920862272901 2 YY 2 7 44.776 0 0 3.4217 0 0 0 979.4427983678711 979.4427983678711 30.79689690656103 0 0 0 0 0.3807196863200844 2 0 0 + YY 3.4217 + + 25 + NaN NaN 101430.1 NaN 10924 3243 14165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14171 63.127 NaN 4492900 35 0 475480 0.327 + 30629 VPDHVVWSL 9 127 526.2817979800001 1050.5490430268 2 526.2818603515625 MULTI HCD FTMS 0 0 0 14170 3134492.75 0.9628610324446828 -2 0.045543670654296875 1 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 123.45060196383646 0.0010021686353097689 2 {[RE]|[WV]}YVVWS{I|L} 8 3 + 82.661 0 0 7.8684 7.8684 90.449 0 0 0 7.946245567496206 9.528937514676485 7.946245567496206 7.946245567496206 0 1.3494850021680094 1 1.705112052208703 0 {[RE]|[WV]}YVVWS{I|L};[VP]DHVVWS{I|L};{[RE]|[WV]}YVWVS{I|L};{[RE]|[WV]}YVVWTV;[DP]VHVVWS{I|L};{[RE]|[WV]}YVWSV{I|L};[VP]DHVWVS{I|L};[VP]DHVVWTV;{[RE]|[WV]}YVWVTV;{[RE]|[WV]}YVRES{I|L} 7.8684;7.112;6.9882;6.9614;6.402;6.3132;6.2318;6.205;6.0811;6.0363 -;+;-;-;-;-;-;-;-;- + 14159 NaN NaN 769544.1 NaN 10925 3244 14170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14172 63.131 NaN 2554300 35 0 374690 0.261 + 29466 TYVENLRLL 9 116 560.8217480351958 1119.6289431371915 2 560.8221435546875 MULTI HCD FTMS 0 0 0 14170 1200646.625 0.9714330994519214 -2 0.045543670654296875 2 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 173.68634876852585 1.8204875074637502E-09 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 119.67 0 0 10.688 10.688 96.192 0 0 0 12.804920779080987 12.804920779080987 12.804920779080987 12.804920779080987 0 2.8807196863200843 2 1.6184151806525389 1.5114393726401687 + + [YT]VEN{I|L}R{I|L}{I|L};TYVEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YV]TEN{I|L}R{I|L}{I|L};TYVEGG{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YEN{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YTN{I|L}R{I|L}{I|L};[YT]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L}{I|L};[YV]ETN{I|L}R{I|L}{I|L};[YV]TEGG{I|L}R{I|L}{I|L} 10.688;9.5446;9.1959;8.7651;8.7221;7.7941;7.5361;7.4488;7.3451;7.2728 +;+;-;-;-;-;-;-;-;- + 1756 NaN NaN 476957.2 NaN 10926 3244 14170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14173 63.135 NaN 915420 35 0 85297 0.261 + 12461 KQPEDYFYL 9 88 601.7911579991085 1201.5677630650168 2 601.7898559570312 MULTI HCD FTMS 0 0 0 14170 287945.78125 0.6272407862789204 -4 0.094146728515625 3 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 45.69961567697781 0.039180348357221985 2 EE[QP]{[MG]|[TS]}Y{I|L} 8 6 46.086 0 0 3.8355 0 0 236.1152058332047 0 236.1152058332047 0 26.62205258459573 0 0 0 2.2302046884880937 0 1.187273075074786 0 EE[QP]{[MG]|[TS]}Y{I|L} 3.8355 - 277 NaN NaN 231880.6 NaN 10927 3244 14170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14174 63.138 NaN 587730 35 0 48286 0.262 + 5901 FPDKVAIQL 9 83 515.800393316049 1029.586233698898 2 515.80029296875 MULTI HCD FTMS 0 0 0 14170 286064.40625 0.419886054490884 13 -0.2967529296875 4 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 49.52724829834842 0.03223213920720493 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]QA{I|L}Q{I|L} 9 3 + 45.657 0 0 4.4345 4.4345 84.566 0 0 0 8.177959224778142 19.823252821099267 8.177959224778142 7.341284356197228 0 1.086696871556164 1.2218487496163564 0.4247425010840047 0.3252574989159953 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]QA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]QAQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T][AG]A{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]QA{I|L}[AG]{I|L};[VP][SG]{M(Oxidation (M))|F}VA{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]QA[AG]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T][AG]AQ{I|L}{I|L};[YN][{I|L}P]VA{I|L}Q{I|L};[VP][YQ]VA{I|L}Q{I|L};[VP][SG]{M(Oxidation (M))|F}VAQ{I|L}{I|L} 4.4345;3.7215;3.5402;3.5402;3.1271;2.8271;2.8271;2.7406;2.4927;2.4141 -;-;-;-;-;-;-;-;-;- 431 NaN NaN 173672.7 NaN 10928 3244 14170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14175 63.141 NaN 374050 35 0 21189 0.261 + 11480 IYQKAFDLI 9 70 555.8131834053348 1109.6118138774696 2 555.813720703125 MULTI HCD FTMS 0 0 0 14170 147579.359375 0.2510582902236141 8 -0.15932083129882812 5 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 61.60191391372663 0.015340508911304802 2 [Y{I|L}]Q[KA]{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 69.829 0 0 6.2931 6.2931 85.536 0 0 0 2.5660085315280554 16.478174818886373 2.5660085315280554 2.5660085315280554 0 1.860924374808178 2 0 0.3807196863200844 + + [Y{I|L}]Q[KA]{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YQ[KA]{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}][AG][KA]{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}Y[AG][KA]{M(Oxidation (M))|F}D{I|L}{I|L};[YQ]{I|L}[KA]{M(Oxidation (M))|F}D{I|L}{I|L};[YQ]K[{I|L}A]{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]Q{[QN]|[E{I|L}]|[KN]}{[VA]|[{I|L}G]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[RH]{[NV]|[RG]}[KA]C(Carbamidomethyl (C)){I|L}{I|L};[RH]{[VA]|[{I|L}G]}{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C)){I|L}{I|L} 6.2931;6.0619;5.4633;5.232;3.6101;2.7973;2.2422;0.50003;0.39611 +;+;-;-;-;-;-;-;- + 384 NaN NaN 153039.8 NaN 10929 3244 14170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14176 63.145 NaN 278540 35 0 23328 0.261 + 18313 MPEQWARLL 9 65 580.300013636078 1158.585474338956 2 580.30029296875 MULTI HCD FTMS 0 0 0 14170 130255.640625 0.6930057581995134 -2 0.045543670654296875 6 Oxidation (M) _M(Oxidation (M))PEQWARLL_ ENSG00000149269|ENST00000356341|PAK1;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;nc|ENSG00000149269|Q13153-2|PAK1;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant 43.77239144664712 0.04802738721622131 2 {M(Oxidation (M))|F}PEQWAR{I|L}{I|L} 9 0 + 53.114 0 0 4.5844 4.5844 86.331 0 0 0 33.65024697793565 9.889917747712644 9.889917747712644 9.208187539523749 0 1.2302046884880937 0 0 0 + + {M(Oxidation (M))|F}PEQWAR{I|L}{I|L};{M(Oxidation (M))|F}PE[AG]WAR{I|L}{I|L} 4.5844;3.7896 +;- + 82 + NaN NaN 140341.7 NaN 10930 3244 14170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14178 63.149 NaN 370210 35 0 55254 0.327 + 26360 SSLEYPRSYP 10 68 599.7909989893483 1197.5674450454965 2 599.8090209960938 MULTI HCD FTMS 0 0 0 14177 18565.66015625 0.10921229517448382 14 -0.3296241760253906 1 Unmodified _SSLEYPRSYP_ ENSG00000159403|ENST00000647956|C1R;ENST00000540394.2_12:7241870-7244269:-|nuORF;nc|ENSG00000159403|P00736|C1R 9.38312468134398 0.42334543440173333 2 YY{I|L}ND{I|L}ER 8 9 52.974 0 0 4.4235 0 0 0 128.0322439628525 128.0322439628525 11.20342432483227 0 0 0 0 0 2 0.3054621874040891 1.035666875892183 YY{I|L}ND{I|L}ER 4.4235 - 328 NaN NaN 148046 NaN 10931 3245 14177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14179 63.154 NaN 154590 35 0 7927 0.262 + -1 RPQTCGIKG 9 67 508.7681884765625 NaN 0 508.7681884765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _RPQTC(Carbamidomethyl (C))GIKG_ REV__DHX8|p.S609F|1|0.41|ENSG00000067596|chr17:43507100-43507100|C/T|missense_variant;REV__ENSG00000067596|ENST00000262415|DHX8;REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF 3.2813086475875832 0.27934607848455584 2 A 1 -1 6.9897 0 0 0.68902 0 0 131.0332537177166 809.3603998298701 940.3936535475866 0 0 0 0 0 0 0 0 0 A 0.68902 - 9 + NaN NaN 117998 NaN 10932 3245 14177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14180 63.157 NaN 118640 35 0 8595 0.261 -1 VYIQEMFRF 9 40 624.807982774412 1247.601412615624 2 625.7349853515625 MULTI HCD FTMS 0 0 0 14177 21613.712890625 0.4022175461337874 1 -0.01285552978515625 3 Oxidation (M) _VYIQEM(Oxidation (M))FRF_ ENSG00000138613|ENST00000261879|APH1B;nc|ENSG00000138613|Q8WW43-2|APH1B 7.289230182591677 0.29575926068275815 2 P{I|L}Q 3 -1 16.198 0 0 1.2983 0 0 164.07776914032848 742.3052462213499 906.3830153616784 0 0 0 0 0 0 0 0 0 P{I|L}Q 1.2983 - 29 + NaN NaN 112986.4 NaN 10933 3245 14177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14182 63.162 NaN 12949000 35 0 2576800 0.327 + 29091 TYGEIFEKF 9 137 567.2792195549672 1132.5438861767343 2 567.2798461914062 MULTI HCD FTMS 0 0 0 14181 10877731 0.5173557700768062 8 -0.16944503784179688 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 148.26817274609934 1.0657023776783114E-05 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 116.56 0 0 10.292 10.292 96.282 0 0 0 13.587722928885185 13.587722928885185 13.587722928885185 13.587722928885185 0 2.6549471895720984 2 1.2031198197908841 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}K;TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}[VG]T{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F} 10.292;9.0922;7.8882;7.4783;7.3921;7.0174;6.9399;6.9142;6.7189;6.6121 +;-;-;-;-;-;-;-;-;- + 16096 + NaN NaN 1001344.4 NaN 10934 3246 14181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14183 63.167 NaN 2761900 35 0 288770 0.261 + 13264 KYMDINFDF 9 109 604.7680784656989 1207.5216039981976 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14181 2026420.5 0.8769968528145498 -6 0.12969207763671875 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 151.47984550603806 7.261867933578587E-06 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 93.616 0 0 7.7527 7.7527 88.353 0 0 0 3.0153844027245924 16.478174818886373 3.0153844027245924 3.0153844027245924 0 2.6549471895720984 0 1.1694451763165201 1.1549471895720984 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]VEKN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.7527;7.503;7.0894;6.9902;6.8396;6.7404;6.3268;6.1394;6.0771;5.9681 +;-;-;-;-;-;-;-;-;- + 6687 NaN NaN 510283.1 NaN 10935 3246 14181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14184 63.17 NaN 670740 35 0 123080 0.261 + 3529 EIKRSCGGYL 10 76 563.29064813411 1124.56674333502 2 564.3089599609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EIKRSCGGYL_ REV__ENST00000498143.5_1_10:75335691-75335772:-|nuORF 18.1463463914782 0.3413772152514074 2 ETY{I|L}C(Carbamidomethyl (C)) 5 -1 39.196 0 0 3.4854 0 0 0 455.25043665103755 455.25043665103755 11.654921997787113 0 0 0 0 0 0 0.4247425010840047 0 ETY{I|L}C(Carbamidomethyl (C)) 3.4854 - 428 + NaN NaN 193903.1 NaN 10936 3246 14181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14185 63.173 NaN 308840 35 0 23734 0.261 + 1285 AYMPHTFFI 9 74 571.770448645615 1141.52634435803 2 571.7705078125 MULTI HCD FTMS 0 0 0 14181 80589.578125 0.08835231162031111 -13 0.28202056884765625 4 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 54.773552608820026 0.024892918755467567 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PK 5 5 45.19 0 0 3.9587 0 0 0 532.2230929010374 532.2230929010374 15.496812376923046 0 0 0 0 0.7742275032520141 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PK 3.9587 - 134 + NaN NaN 139116.5 NaN 10937 3246 14181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14186 63.177 NaN 201350 35 0 20881 0.263 -1 DYSTMLSHSFL 11 59 439.533667129747 NaN 0 439.5334777832031 PEAK HCD FTMS 0 0 0 14181 11823.6650390625 0.18235545785563193 7 -0.14329147338867188 5 Oxidation (M) _DYSTM(Oxidation (M))LSHSFL_ ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant 10.315234532428624 0.31285879373174325 2 S 1 -1 3.9794 0 0 0.45372 0 0 511.9293640720187 275.06696497135005 786.9963290433687 0 0 0 0 0 0 0 0 0 S 0.45372 + + 21 + NaN NaN 122878.8 NaN 10938 3246 14181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14188 63.182 NaN 621990 35 0 293880 0.327 -1 0 64 427.30263388320066 852.5907148332013 2 427.3026123046875 MULTI HCD FTMS 0 0 0 14187 493118.53125 0.33312807055010424 -12 0.24596405029296875 1 NaN NaN 2 Y 1 -1 13.495 0 0 1.5828 0 0 671.5166466953092 0 671.5166466953092 0 0.7306401783911909 0 0 0 0 0 0 0 Y 1.5828 - 16 + NaN NaN 197290.7 NaN 10939 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14189 63.186 NaN 341750 35 0 17925 0.261 + 31713 VYLDKFIRL 9 69 583.850098687434 1165.6856444416678 2 583.850341796875 MULTI HCD FTMS 0 0 0 14187 201559.453125 0.60966567225069 1 -0.02608489990234375 2 Unmodified _VYLDKFIRL_ ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF 46.0223103267499 0.037698999139422325 2 VY{I|L}DK{M(Oxidation (M))|F}{I|L}R{I|L} 9 0 + 95.398 0 0 8.1838 8.1838 95.665 0 0 0 81.66436201540623 7.816658315635081 7.816658315635081 25.54953742795611 0 2.254432191740108 2 0 0 + + VY{I|L}DK{M(Oxidation (M))|F}{I|L}R{I|L};[YV]EVK{M(Oxidation (M))|F}{I|L}R{I|L};{I|L}[YV]DK{M(Oxidation (M))|F}{I|L}R{I|L};[YV]AA[{I|L}T]{M(Oxidation (M))|F}{I|L}R{I|L} 8.1838;5.992;4.8218;3.5739 +;-;-;- + 308 + NaN NaN 153178.6 NaN 10940 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14190 63.19 NaN 583540 35 0 59483 0.261 + 20029 NYIGLINRI 9 73 538.3163769983624 1074.6182010635248 2 538.31640625 MULTI HCD FTMS 0 0 0 14187 247778.546875 0.048646019088834966 30 -0.8166542053222656 3 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 88.95385435242217 0.004553379958619559 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 84.643 0 0 7.8765 7.8765 95.039 0 0 0 15.679927613948692 15.679927613948692 15.679927613948692 23.906752711509114 0 2.492992819099939 1.6989700043360187 0 1.339136830878453 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[VG];[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L};[YN]{I|L}{I|L}{I|L}GNR{I|L};[YN]{I|L}{I|L}{I|L}G{[QV]|[N{I|L}]|[RA]|[KV]}[VG];[YN]{I|L}{I|L}{I|L}GGGR{I|L};[MT]{I|L}{I|L}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.8765;5.6518;5.5605;5.2079;3.6362;2.8707;2.7794;0.58926 +;-;-;-;-;-;-;- + 640 NaN NaN 179403.6 NaN 10941 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14191 63.193 NaN 186610 35 0 23549 0.261 + 18285 MPDVDLHL 8 41 470.23384817272665 938.4531434122533 2 470.2336120605469 MULTI HCD FTMS 0 0 0 14187 144542.359375 0.15714122591176186 18 -0.4709053039550781 4 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 36.04419817259434 0.28174663821216267 2 MPDVD{I|L}H{I|L} 8 0 + 50.087 0 0 5.3371 5.3371 92.005 0 0 0 30.622600263328295 8.098943791441968 8.098943791441968 50.08655041508895 0 1.274227503252014 0 0 0 + + MPDVD{I|L}H{I|L} 5.3371 + + 39 + NaN NaN 114370.5 NaN 10942 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14192 63.196 NaN 293350 35 0 48053 0.261 -1 DEFKCDGGRC 10 49 593.7349837067175 1185.4554144802348 2 593.735107421875 MULTI HCD FTMS 0 0 0 14187 110421.953125 0.4341838669996288 9 -0.20897674560546875 5 Carbamidomethyl (C) _DEFKC(Carbamidomethyl (C))DGGRC_ ENSG00000081479|ENST00000649046|LRP2 1.1933415558491238 0.46898715808974617 2 Q 1 -1 2.4743 0 0 0.20872 0 0 569.2278276655849 485.1500643365844 1054.3778920021693 0 0 0 0 0 0 0 0 0 Q 0.20872 - 5 + NaN NaN 151328.7 NaN 10943 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14193 63.2 NaN 249270 35 0 15940 0.261 + 16830 LYECTGQFDF 10 60 611.7575771306042 1221.5006013280083 2 611.7575073242188 MULTI HCD FTMS 0 0 0 14187 97404.9609375 0.43027645041112167 -5 0.10052490234375 6 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 24.990960013464015 0.27735500881591096 2 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 58.13 0 0 4.7589 0 0 305.13801772285314 0 305.13801772285314 0 50.05837836986652 0 0 0 2.3494850021680094 0 0 0.7134679910804405 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7589 - 248 NaN NaN 125925.9 NaN 10944 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14194 63.203 NaN 93761 35 0 10814 0.261 + -1 HDESCHMIGC 10 38 631.223726334749 1260.432899736298 2 631.2239990234375 MULTI HCD FTMS 0 0 0 14187 58902.23046875 1 0 0 7 2 Carbamidomethyl (C),Oxidation (M) _HDESC(Carbamidomethyl (C))HM(Oxidation (M))IGC(Carbamidomethyl (C))_ REV__ENST00000340424.4_1_20:1651794-1678423:-|nuORF 0.45834013312273997 0.47287763746706196 2 T 1 -1 3.0989 0 0 0.24586 0 0 767.1802274724292 389.1853426568969 1156.3655701293262 0 0 0 0 0 0 0 0 0 T 0.24586 - 1 + NaN NaN 111212.1 NaN 10945 3247 14187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14196 63.208 NaN 2139700 35 0 215400 0.327 + 32320 VYVDLGGSHVF 11 95 596.8037942801744 1191.5930356271488 2 596.8038330078125 MULTI HCD FTMS 0 0 0 14195 1022971.5 0.7831594589235583 1 -0.02276611328125 1 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 185.05004568166646 4.5298669451862795E-14 2 [YV]VD{I|L}GGSHV{M(Oxidation (M))|F} 11 0 + 115.3 0 0 9.6763 9.6763 90.549 0 0 0 3.0768598926252935 86.75814530746703 3.0768598926252935 2.843181179205061 0 3.642159058960253 1.6989700043360187 1.6421590589602533 0 + + [YV]VD{I|L}GGSHV{M(Oxidation (M))|F};[YV]VEVGGSHV{M(Oxidation (M))|F};[YV]VD{I|L}NSHV{M(Oxidation (M))|F};[YV]DV{I|L}GGSHV{M(Oxidation (M))|F};[YV]VD{I|L}GGSH{M(Oxidation (M))|F}V;[YV]VEVNSHV{M(Oxidation (M))|F};[YV]D{I|L}VGGSHV{M(Oxidation (M))|F};[YV]V{I|L}DGGSHV{M(Oxidation (M))|F};[YV]VEVGGSH{M(Oxidation (M))|F}V;[YV]DV{I|L}NSHV{M(Oxidation (M))|F} 9.6763;9.4377;8.9575;8.8563;8.7503;8.7189;8.6177;8.5637;8.5117;8.1374 +;-;-;-;-;-;-;-;-;- + 6533 NaN NaN 412674.7 NaN 10946 3248 14195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14197 63.212 NaN 576280 35 0 61278 0.261 + 2237 DLADYFEKF 9 101 574.2688858494805 1146.523218765761 2 574.2688598632812 MULTI HCD FTMS 0 0 0 14195 163474.890625 0.2807254874034603 13 -0.3301887512207031 2 Unmodified _DLADYFEKF_ tr|U7SE99|U7SE99_FUSNUGlycosyltransferase2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02363PE=4SV=1 19.256988751693697 0.19398022840297344 2 {[YD]|[{M(Oxidation (M))|F}M]}GE[KG]G{M(Oxidation (M))|F}K 9 7 37.536 0 0 3.2739 0 0 0 162.05000364868116 162.05000364868116 13.367261009623434 0 0 0 0 1.5941876774005248 1.2218487496163564 0.3054621874040891 0 {[YD]|[{M(Oxidation (M))|F}M]}GE[KG]G{M(Oxidation (M))|F}K 3.2739 - 1240 NaN NaN 181433 NaN 10947 3248 14195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14198 63.216 NaN 216230 35 0 16190 0.261 + 25941 SPDAKIFCL 9 52 497.2575770540871 992.5006011749742 2 497.2574768066406 MULTI HCD FTMS 0 0 0 14195 165689.03125 0.719140370711943 2 -0.04218292236328125 3 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 61.60191391372663 0.015340508911304802 2 SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 83.905 0 0 8.4539 8.4539 89.54 0 0 0 3.4370405245622493 3.4370405245622493 3.4370405245622493 3.4370405245622493 0 2.6549471895720984 1.6989700043360187 0.3252574989159953 0 + + SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L};[PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 8.4539;8.1076 +;+ + 87 + NaN NaN 122815.1 NaN 10948 3248 14195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14199 63.219 NaN 335360 35 0 46581 0.261 + 29584 VADPYVVIM 9 58 511.76494441039256 1021.5153358875851 2 511.764892578125 MULTI HCD FTMS 0 0 0 14195 149863.078125 0.23804207524872312 10 -0.24174118041992188 4 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 42.09456458481378 0.05572955244001856 2 VV{I|L}{M(Oxidation (M))|F} 4 5 48.047 0 0 4.7035 0 0 545.2493763654312 0 545.2493763654312 0 41.05774396488272 0 0 0 1.8494850021680094 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.7035 + + 74 NaN NaN 140872.9 NaN 10949 3248 14195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14200 63.222 NaN 140430 35 0 37961 0.261 -1 ACGNDDCR 8 35 455.6602783391966 NaN 0 455.6605529785156 PEAK HCD FTMS 0 0 0 14195 83764.953125 0.6014797350416198 10 -0.24174118041992188 5 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108047.2 NaN 10950 3248 14195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14201 63.226 NaN 116860 35 0 13603 0.261 + 31502 VYFYEPFRK 9 54 624.8243081398932 1247.6340633465863 2 624.8099975585938 MULTI HCD FTMS 0 0 0 14195 13789.2080078125 0.03539794623082635 25 -0.6826095581054688 6 Unmodified _VYFYEPFRK_ tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1 2.302733041254933 0.33356062215410776 2 {I|L}Q[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}] 7 5 20.986 0 0 1.6821 0 0 262.16371160382727 0 262.16371160382727 0 13.996294548824366 0 0 0 0 0 0 0.5 {I|L}Q[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[R{M(Oxidation (M))|F}] 1.6821 - 43 + NaN NaN 99321.6 NaN 10951 3248 14195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14203 63.231 NaN 1102300 35 0 224180 0.327 + 6568 FPLDLDVKM 9 86 547.2833450810227 1092.5521372288454 2 547.77099609375 MULTI HCD FTMS 0 0 0 14202 119289.4609375 0.2748920005164762 18 -0.4776268005371094 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 78.943 0 0 7.2256 7.2256 88.716 0 0 0 39.7252495059459 16.478174818886373 16.478174818886373 6.505149978319906 0 2.5400990676322905 0 0 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[VP]{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}[SG]VV{M(Oxidation (M))|F} 7.2256;6.6302;6.2599;5.7808;5.6741;5.1854;4.7115;4.082;4.0453;3.9095 +;-;+;-;-;-;-;-;-;- + 1057 + NaN NaN 254197.3 NaN 10952 3249 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14204 63.235 NaN 821430 35 0 206610 0.261 + 16386 LSFSLRTVF 9 89 535.3056100150868 1068.5966670969735 2 535.3056030273438 MULTI HCD FTMS 0 0 0 14202 235897.421875 0.04553911974274653 25 -0.6859550476074219 2 Unmodified _LSFSLRTVF_ REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF 36.12702656103203 0.08312389501731911 2 ATV{M(Oxidation (M))|F} 4 -1 52.907 0 0 4.9511 0 0 632.3639084919712 0 632.3639084919712 0 37.528200427267535 0 0 0 1.8494850021680094 0 1 0 ATV{M(Oxidation (M))|F} 4.9511 - 429 NaN NaN 220495.6 NaN 10953 3249 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14205 63.238 NaN 753560 35 0 47929 0.261 + 6726 FPQDRVFML 9 101 584.7945927180004 NaN 0 584.79443359375 PEAK HCD FTMS 0 0 0 14202 250564.375 0.4549485182338915 -10 0.20745468139648438 3 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 63.227496030279354 0.019321093200456756 2 PQDRV{M(Oxidation (M))|F} 6 3 43.126 0 0 3.6937 0 0 147.06908259642393 275.10679041080317 422.1758730072271 0 0 0 0 0 2.368415180652539 0 0.6505149978319906 0.2302046884880938 + PQDRV{M(Oxidation (M))|F} 3.6937 + + 508 + NaN NaN 207029.9 NaN 10954 3249 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14206 63.242 NaN 644640 35 0 192760 0.263 + 16985 LYIGWDKHYGF 11 55 466.89939401658086 1397.6763526499426 3 466.89947509765625 MULTI HCD FTMS 0 0 0 14202 102375.875 0.23001022188705486 5 -0.10115814208984375 4 Unmodified _LYIGWDKHYGF_ ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 23.96415052054722 0.2482819825798713 2 {I|L}Y{I|L}G 4 7 59.993 0 0 4.2923 0 0 0 948.4019548534463 948.4019548534463 44.33098439955742 0 0 0 0 0.805462187404089 2 0 0 + {I|L}Y{I|L}G 4.2923 + + 47 + NaN NaN 181945.3 NaN 10955 3249 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14207 63.245 NaN 416970 35 0 62136 0.261 -1 ECFLDKHHE 9 52 607.7666793565093 1213.5188057798184 2 607.7672729492188 MULTI HCD FTMS 0 0 0 14202 126235.515625 0.4865923018529007 -3 0.06828689575195312 5 Carbamidomethyl (C) _EC(Carbamidomethyl (C))FLDKHHE_ ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B 14.838274106304384 0.23215694253501695 2 {[WN]|[YH]}[NS]YPWT{M(Oxidation (M))|F} 9 -1 + 48.962 0 0 4.0347 4.0347 90.19 0 0 0 0.9370846219822582 32.508491328472005 0.9370846219822582 48.96214152359285 0 1.3807196863200843 0 0.7742275032520141 0 {[WN]|[YH]}[NS]YPWT{M(Oxidation (M))|F} 4.0347 - 186 NaN NaN 153782.8 NaN 10956 3249 14202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14209 63.25 NaN 504470 35 0 63604 0.326 + 5189 FFDAELSQM 9 73 552.2393087556661 1102.4640645781321 2 552.2394409179688 MULTI HCD FTMS 0 0 0 14208 177479.359375 0.032034898341897426 41 -1.1545486450195312 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 92.65332237495696 0.004456439685314431 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 73.739 0 0 6.6886 6.6886 89.705 0 0 0 4.762036441594191 55.78009063929706 4.762036441594191 9.208187539523749 0 1.8807196863200843 0 1.110924374808178 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{[QS]|[NT]}PY{[CP]|[EA]}[YV]{M(Oxidation (M))|F} 6.6886;5.8533;0.99608 +;-;- + 414 NaN NaN 164523.8 NaN 10957 3250 14208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14211 63.257 NaN 2412600 35 0 272540 0.327 + 30630 VPDHVVWSL 9 103 526.2817979800001 1050.5490430268 2 526.2822265625 MULTI HCD FTMS 0 0 0 14210 1690364.125 0.5192501231993447 5 -0.133575439453125 1 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 123.45060196383646 0.0010021686353097689 2 {[RE]|[WV]}YVVWS{I|L} 8 3 + 84.391 0 0 8.033 8.033 91.057 0 0 0 13.983722474588546 8.737125054200234 8.737125054200234 8.737125054200234 0 1.3494850021680094 0.958607314841775 1.6184151806525389 0 {[RE]|[WV]}YVVWS{I|L};{[RE]|[WV]}YVVWTV;{[RE]|[WV]}YVWVS{I|L};[VP]DHVVWS{I|L};{[RE]|[WV]}YVWSV{I|L};{[RE]|[WV]}YVWVTV;{[RE]|[WV]}YVSWV{I|L};[VP]DHVVWTV;{[RE]|[WV]}YVVTWV;[VP]DHVWVS{I|L} 8.033;7.2014;7.1528;6.7019;6.4779;6.3211;5.9642;5.8703;5.8519;5.8217 -;-;-;+;-;-;-;-;-;- + 8379 NaN NaN 450305.2 NaN 10958 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14212 63.261 NaN 1479600 35 0 209850 0.261 + 29467 TYVENLRLL 9 108 560.8217480351958 1119.6289431371915 2 560.8218994140625 MULTI HCD FTMS 0 0 0 14210 502691.75 0.40672367256386566 5 -0.133575439453125 2 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 173.68634876852585 1.8204875074637502E-09 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 117.75 0 0 10.517 10.517 95.833 0 0 0 11.818970284316435 11.818970284316435 11.818970284316435 11.818970284316435 0 2.8807196863200843 2 1.6479400086720375 1.642159058960253 + + [YT]VEN{I|L}R{I|L}{I|L};TYVEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YV]TEN{I|L}R{I|L}{I|L};TYVEGG{I|L}R{I|L}{I|L};{[TV]|[{I|L}S]}YEN{I|L}R{I|L}{I|L};[YT]VV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{I|L}{I|L};[YV]TEGG{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]GG{I|L}R{I|L}{I|L} 10.517;9.4612;8.9077;8.6802;8.6388;7.4538;7.3423;7.0712;6.7201;5.8977 +;+;-;-;-;-;-;-;-;- + 1216 NaN NaN 308652.9 NaN 10959 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14213 63.265 NaN 737820 35 0 77557 0.261 + 12462 KQPEDYFYL 9 82 601.7911579991085 1201.5677630650168 2 601.7904663085938 MULTI HCD FTMS 0 0 0 14210 265575.21875 0.5785103303191607 3 -0.07460784912109375 3 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 45.69961567697781 0.039180348357221985 2 [KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L} 9 0 + 44.089 0 0 3.6693 3.6693 81.997 0 0 0 3.154755048755362 11.478174818886373 3.154755048755362 3.154755048755362 0 1.75 0 0.6989700043360187 0.4247425010840047 + + [KQ][EP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]Y{[WT]|[RM]}{M(Oxidation (M))|F}Y{I|L};[KQ][EP][QP]EEA{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]Y[{M(Oxidation (M))|F}V]{[MG]|[TS]}Y{I|L};[HV][{M(Oxidation (M))|F}V]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}Y{I|L};[YK]{[MS]|[{M(Oxidation (M))|F}A]}VVEEA{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]Y{[WT]|[RM]}[Y{I|L}]{M(Oxidation (M))|F} 3.6693;3.4068;2.714;1.9549;1.5362;1.3495;0.84841 +;-;-;-;-;-;- + 174 NaN NaN 199245.7 NaN 10960 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14214 63.268 NaN 586690 35 0 47059 0.261 + 4412 EYFKSFNF 8 77 541.2529598530334 1080.4913667728667 2 541.2525024414062 MULTI HCD FTMS 0 0 0 14210 180878.671875 0.8508493437031555 -1 0.00713348388671875 4 Unmodified _EYFKSFNF_ ENSG00000151470|ENST00000425929|C4orf33 64.23631603340823 0.039635161348402365 2 QD{M(Oxidation (M))|F}SRNN{M(Oxidation (M))|F} 8 5 57.146 0 0 5.2889 0 0 54.046882393673805 0 54.046882393673805 0 42.50269873230978 0 0 0 0.3252574989159953 0 0.3807196863200844 0.4247425010840047 QD{M(Oxidation (M))|F}SRNN{M(Oxidation (M))|F} 5.2889 - 791 + NaN NaN 176313.2 NaN 10961 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14215 63.271 NaN 366440 35 0 48205 0.261 -1 DYRMCTLI 8 80 544.2491153887769 1086.4836778443537 2 544.2493896484375 MULTI HCD FTMS 0 0 0 14210 100001.40625 0.3586205049372944 -8 0.14652633666992188 5 Carbamidomethyl (C),Oxidation (M) _DYRM(Oxidation (M))C(Carbamidomethyl (C))TLI_ ENSG00000122218|ENST00000241704|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;nc|ENSG00000122218|P53621-2|COPA 4.75600775471527 0.5349361699807423 2 MC(Carbamidomethyl (C)){M(Oxidation (M))|F} 3 -1 14.27 0 0 1.3134 0 0 0 645.3275240533811 645.3275240533811 0.29045612817199995 0 0 0 0 0 0 0 0 MC(Carbamidomethyl (C)){M(Oxidation (M))|F} 1.3134 - 83 + NaN NaN 142045.4 NaN 10962 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14216 63.275 NaN 392380 35 0 21640 0.261 + 5902 FPDKVAIQL 9 77 515.800393316049 1029.586233698898 2 516.3017578125 MULTI HCD FTMS 0 0 0 14210 48433.4609375 0.12544671861888965 20 -0.571044921875 6 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 61.60191391372663 0.015340508911304802 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WR]A{I|L}Q 7 4 37.312 0 0 3.624 0 0 0 128.06981059596492 128.06981059596492 21.751505756603855 0 0 0 0 1.1549471895720984 1.3979400086720375 0.3807196863200844 0.5 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WR]A{I|L}Q 3.624 - 264 NaN NaN 158243.2 NaN 10963 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14217 63.278 NaN 226490 35 0 16774 0.261 -1 MAEPPRMMDF 10 56 620.7631673309509 1239.5117817287016 2 620.7639770507812 MULTI HCD FTMS 0 0 0 14210 99940.109375 0.9845146174130783 -1 0.00713348388671875 7 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 20.41453444215458 0.3201613495159799 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 51.186 0 0 4.1295 0 0 698.2951487131498 0 698.2951487131498 0 51.18562527100117 0 0 0 1.5 0 0 0.4247425010840047 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1295 - 130 NaN NaN 120265.1 NaN 10964 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14218 63.281 NaN 279860 35 0 44593 0.264 + 17056 LYKLRFVLTY 10 63 439.2637319931989 1314.7693665797967 3 439.2640075683594 MULTI HCD FTMS 0 0 0 14210 29946.462890625 0.6125200243848069 -3 0.04931640625 8 Unmodified _LYKLRFVLTY_ ENSG00000197136|ENST00000355703|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;nc|ENSG00000197136|Q9H6A9-3|PCNX3 5.40270961882225 0.4467063037482923 2 {I|L}Y 2 8 44.776 0 0 3.4056 0 0 0 1035.5992625208175 1035.5992625208175 29.291746928241125 0 0 0 0 0.3807196863200844 2 0 0 + {I|L}Y 3.4056 + + 46 + NaN NaN 127541.1 NaN 10965 3251 14210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14220 63.286 NaN 524070 35 0 59138 0.327 + 30128 VGEFEFRSL 9 88 542.2769996279526 1082.539446322705 2 542.2770385742188 MULTI HCD FTMS 0 0 0 14219 191160.796875 0.5568225893646229 11 -0.3042488098144531 1 Unmodified _VGEFEFRSL_ REV__ENSG00000150995|ENST00000649015|ITPR1;REV__nc|ENSG00000150995|Q14643-2|ITPR1;REV__nc|ENSG00000150995|Q14643-3|ITPR1;REV__nc|ENSG00000150995|Q14643-4|ITPR1;REV__nc|ENSG00000150995|Q14643-5|ITPR1;REV__nc|ENSG00000150995|Q14643-6|ITPR1;REV__nc|ENSG00000150995|Q14643-7|ITPR1;REV__nc|ENSG00000150995|Q14643-8|ITPR1 29.081581746732265 0.1154664336125038 2 NN{M(Oxidation (M))|F} 3 -1 24.781 0 0 2.2892 0 0 689.368965931776 0 689.368965931776 0 3.0868855787809757 0 0 0 0 0 0 0.6109243748081782 NN{M(Oxidation (M))|F} 2.2892 - 934 + NaN NaN 169982.7 NaN 10966 3252 14219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14221 63.29 NaN 242310 35 0 23461 0.261 + 18314 MPEQWARLL 9 66 580.300013636078 1158.585474338956 2 580.3001098632812 MULTI HCD FTMS 0 0 0 14219 90648.296875 0.4822807780448391 6 -0.16348648071289062 2 Oxidation (M) _M(Oxidation (M))PEQWARLL_ ENSG00000149269|ENST00000356341|PAK1;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;nc|ENSG00000149269|Q13153-2|PAK1;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant 53.40400417844725 0.026808823219830042 2 {M(Oxidation (M))|F}PEQWAR{I|L}{I|L} 9 0 + 55.829 0 0 4.8188 4.8188 86.653 0 0 0 36.36554685102226 8.384767769392738 8.384767769392738 9.208187539523749 0 1.8539171939081172 0 0 0 + + {M(Oxidation (M))|F}PEQWAR{I|L}{I|L};{M(Oxidation (M))|F}PE[AG]WAR{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EQWAR{I|L}{I|L} 4.8188;4.024;3.1537 +;-;+ + 86 + NaN NaN 129012.9 NaN 10967 3252 14219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14222 63.294 NaN 248770 35 0 27471 0.261 -1 VADPYVVIM 9 53 511.76494441039256 1021.5153358875851 2 511.76513671875 MULTI HCD FTMS 0 0 0 14219 73673.1953125 0.11702228808996046 14 -0.3860893249511719 3 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 21.74664581756881 0.17247014374749275 2 AV{I|L}{M(Oxidation (M))|F} 4 -1 41.414 0 0 4.0542 0 0 573.2814198224625 0 573.2814198224625 0 34.42471268044436 0 0 0 1.4247425010840047 0 0 0 AV{I|L}{M(Oxidation (M))|F} 4.0542 - 56 NaN NaN 126568.5 NaN 10968 3252 14219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14223 63.297 NaN 127870 35 0 12015 0.261 + 31172 VVDHPALAF 9 45 484.7635570187977 967.5125611043954 2 484.7635192871094 MULTI HCD FTMS 0 0 0 14219 49264.3046875 0.9558028610586747 -13 0.2629432678222656 4 Unmodified _VVDHPALAF_ ENSG00000197147|ENST00000330947|LRRC8B 12.531546534597751 0.2520865569484384 2 A{M(Oxidation (M))|F} 2 7 30.969 0 0 3.2009 0 0 731.3967754372064 0 731.3967754372064 0 27.870156338638594 0 0 0 1 0 0 0 + A{M(Oxidation (M))|F} 3.2009 + + 24 + NaN NaN 121314 NaN 10969 3252 14219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14224 63.301 NaN 206960 35 0 23184 0.261 + 3282 EEFDFHVRW 9 60 422.1962425315606 1263.5668981948818 3 422.19610595703125 MULTI HCD FTMS 0 0 0 14219 34504.078125 0.09429795400187292 12 -0.33373260498046875 5 Unmodified _EEFDFHVRW_ ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1 1.9063754702782614 0.3365653076853981 2 {M(Oxidation (M))|F}QD{M(Oxidation (M))|F}[HC] 6 6 26.031 0 0 2.0601 0 0 468.24705702949376 0 468.24705702949376 0 9.041068762088997 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QD{M(Oxidation (M))|F}[HC] 2.0601 - 25 NaN NaN 124600.5 NaN 10970 3252 14219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14226 63.306 NaN 8728700 35 0 1674400 0.326 + 29092 TYGEIFEKF 9 132 567.2792195549672 1132.5438861767343 2 567.2797241210938 MULTI HCD FTMS 0 0 0 14225 6321115 0.30063855399338807 15 -0.4413185119628906 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 160.6895995991744 8.89223804155775E-09 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 115.08 0 0 10.161 10.161 96.571 0 0 0 15.729085780792786 15.729085780792786 15.729085780792786 15.729085780792786 0 2.6237125054200234 2 1.475998565071222 0.2302046884880938 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YG]TE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GE{M(Oxidation (M))|F}{I|L}[VG]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{M(Oxidation (M))|F}{I|L}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F} 10.161;8.7724;7.7542;7.2697;7.0025;6.7805;6.6112;6.5944;6.4636;6.3958 +;-;-;-;-;-;-;-;-;- + 14654 + NaN NaN 687204.2 NaN 10971 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14227 63.31 NaN 3338900 35 0 387250 0.261 + 13265 KYMDINFDF 9 121 604.7680784656989 1207.5216039981976 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14225 2191316.75 0.9483608625503974 1 -0.026153564453125 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 139.78183599554657 1.962818552322152E-05 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 97.122 0 0 8.0431 8.0431 89.118 0 0 0 3.2568864632742844 52.71415367393175 3.2568864632742844 3.8071968632008435 0 2.6549471895720984 0 1.520021379835142 1.1549471895720984 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}EKN{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.0431;7.7278;7.3538;7.2805;7.0385;6.9652;6.7522;6.5913;6.3824;6.3642 +;-;-;-;-;-;-;-;-;- + 10853 NaN NaN 599696.2 NaN 10972 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14228 63.314 NaN 937310 35 0 101870 0.261 + 1286 AYMPHTFFI 9 85 571.770448645615 1141.52634435803 2 571.7703247070312 MULTI HCD FTMS 0 0 0 14225 525313.5625 0.5759140158344858 -6 0.1238555908203125 3 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 117.59872219059416 0.0017018906413822257 2 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L} 8 1 95.246 0 0 8.3438 0 0 0 162.0557039850219 162.0557039850219 63.30829106656459 0 0 0 0 2.4604093769761874 2 0.7302046884880937 0 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L} 8.3438 - 995 + NaN NaN 240281.5 NaN 10973 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14229 63.317 NaN 284200 35 0 47512 0.261 + 24151 RYEGILYTI 9 55 564.3087387361484 1126.6029245390966 2 564.3086547851562 MULTI HCD FTMS 0 0 0 14225 96034.03125 0.42568630058428014 7 -0.202972412109375 4 Unmodified _RYEGILYTI_ ENSG00000149657|ENST00000279068|LSM14B;ENSG00000257103|ENST00000544216|LSM14A;LSM14A|p.D364*|1|0.16|ENSG00000257103|chr19:34219829-34219830|-/T|frameshift_variant;nc|ENSG00000149657|Q9BX40-2|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A 36.506200033944 0.08138327636155518 2 {I|L}W{I|L}YT{I|L} 6 5 63.889 0 0 5.6709 0 0 319.15184218574376 0 319.15184218574376 0 50.70107520596089 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {I|L}W{I|L}YT{I|L} 5.6709 - 178 NaN NaN 130666.8 NaN 10974 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14230 63.32 NaN 169300 35 0 11836 0.262 + -1 EYSCIEEMCE 10 62 450.4952547030921 1348.4639347094762 3 450.4952697753906 MULTI HCD FTMS 0 0 0 14225 98088.078125 1 0 0 5 2 Carbamidomethyl (C) _EYSC(Carbamidomethyl (C))IEEMC(Carbamidomethyl (C))E_ REV__ENSG00000130032|ENST00000674457|PRRG3 1.9063754702782614 0.46521295622613185 2 [YT]GT 4 -1 29.693 0 0 2.202 0 0 0 923.2595639421512 923.2595639421512 24.20818753952375 0 0 0 0 0 2 0 0 [YT]GT 2.202 - 21 NaN NaN 111858.4 NaN 10975 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14231 63.324 NaN 138720 35 0 7078.7 0.261 + 11481 IYQKAFDLI 9 47 555.8131834053348 1109.6118138774696 2 555.8138427734375 MULTI HCD FTMS 0 0 0 14225 59563.45703125 0.10132785333533931 17 -0.49983978271484375 6 Unmodified _IYQKAFDLI_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 39.94969957227396 0.06557568441294001 2 [Y{I|L}]Q 3 6 36.695 0 0 3.307 0 0 0 702.3817778269414 702.3817778269414 9.699915470362015 0 0 0 0 0.9247425010840047 2 0 0 + [Y{I|L}]Q 3.307 + + 22 NaN NaN 125411.8 NaN 10976 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14232 63.327 NaN 162590 35 0 20024 0.261 + 33670 YKGSCFHSII 10 47 577.7866707727143 1153.5587886122285 2 577.787109375 MULTI HCD FTMS 0 0 0 14225 37579.87890625 0.08746077085671118 50 -1.4127273559570312 7 Unmodified _YKGSCFHSII_ ENST00000452411.1_1_7:98083525-98083918:-|nuORF 5.296884461304476 0.4472664531305844 2 {I|L}{I|L} 2 8 25.217 0 0 2.186 0 0 909.3802847748813 0 909.3802847748813 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.186 + + 3 NaN NaN 116640.3 NaN 10977 3253 14225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14234 63.332 NaN 1105600 35 0 552460 0.327 -1 0 69 427.30263388320066 852.5907148332013 2 427.3026428222656 MULTI HCD FTMS 0 0 0 14233 510214.96875 0.34467763293061043 -5 0.10115814208984375 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.4971 0 0 687.511718106442 0 687.511718106442 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4971 - 27 + NaN NaN 271950 NaN 10978 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14235 63.336 NaN 555910 35 0 47795 0.261 + 20030 NYIGLINRI 9 79 538.3163769983624 1074.6182010635248 2 538.3164672851562 MULTI HCD FTMS 0 0 0 14233 83114.203125 0.016317696438068824 37 -1.0728073120117188 2 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 88.95385435242217 0.004553379958619559 2 [YN]{I|L}G{I|L}{I|L}NR{I|L} 9 0 + 86.451 0 0 8.0448 8.0448 95.837 0 0 0 21.802410745105476 17.7596217904877 17.7596217904877 31.010598284629225 0 2.385151878060192 1.6989700043360187 0 1.6278623208748888 + + [YN]{I|L}G{I|L}{I|L}NR{I|L};[YN]{I|L}G{I|L}{I|L}GGR{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L} 8.0448;5.1591;4.5377 +;-;- + 228 NaN NaN 184852.1 NaN 10979 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14236 63.34 NaN 981200 35 0 66717 0.261 + 6738 FPQEVKDLL 9 103 544.8030623285159 1087.5915717238317 2 544.8030395507812 MULTI HCD FTMS 0 0 0 14233 239986.4375 0.27516883708797585 -4 0.0817413330078125 3 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 114.18643581695662 0.002258955990713129 2 {M(Oxidation (M))|F}PQEVKD{I|L}{I|L} 9 0 + 77.023 0 0 7.082 7.082 88.158 0 0 0 5.806321208805244 5.806321208805244 5.806321208805244 5.806321208805244 0 2.4604093769761874 0 1.1747425010840047 0.6549471895720985 + + {M(Oxidation (M))|F}PQEVKD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}QPE;{M(Oxidation (M))|F}P[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V]QPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVK[{I|L}V]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}[AG]PE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V][AG]PE;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}V{M(Oxidation (M))|F}QPE 7.082;6.5481;6.5249;6.2353;6.2;5.7038;5.7015;5.6783;5.3533;5.2179 +;+;-;-;-;-;-;-;-;- + 1255 + NaN NaN 240254.1 NaN 10980 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14237 63.343 NaN 643610 35 0 47778 0.261 -1 CKASCNCSNSI 11 77 593.7349837067175 1185.4554144802348 2 593.7345581054688 MULTI HCD FTMS 0 0 0 14233 59506.7421875 0.23398306862287443 16 -0.47368621826171875 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))KASCNCSNSI_ ENSG00000096006|ENST00000263045|CRISP3;nc|ENSG00000096006|P54108-3|CRISP3;nc|ENSG00000096006|P54108|CRISP3 5.296884461304476 0.39569033063702824 2 MWK{I|L}YN{[TV]|[{I|L}S]} 8 -1 39.435 0 0 3.3266 0 0 131.92705398560025 0 131.92705398560025 0 3.4488869804293643 0 0 0 0 0 1.086696871556164 0.75 MWK{I|L}YN{[TV]|[{I|L}S]} 3.3266 - 211 + NaN NaN 188463.9 NaN 10981 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14238 63.346 NaN 132330 35 0 14412 0.263 + 18286 MPDVDLHL 8 46 470.23384817272665 938.4531434122533 2 470.2334899902344 MULTI HCD FTMS 0 0 0 14233 52677.75 0.05726934477247122 25 -0.7255630493164062 5 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 26.88365393820708 0.39599352634412927 2 MPDVD 5 3 35.177 0 0 3.7484 0 0 0 378.2142378244495 378.2142378244495 7.640143618001218 0 0 0 0 0.5 0 0 0 + MPDVD 3.7484 + + 33 + NaN NaN 108028.8 NaN 10982 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14239 63.35 NaN 93543 35 0 11164 0.261 + 10245 IILQQFVP 8 37 479.2920475670695 956.569542200939 2 479.2919921875 MULTI HCD FTMS 0 0 0 14233 22424.130859375 0.4127774336713981 1 -0.02617645263671875 6 Unmodified _IILQQFVP_ LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|54|2|anti-sense 10.183394434864962 0.5188676124868831 2 W 1 8 3.0989 0 0 0.32396 0 0 572.3220579253516 195.15007959537346 767.472137520725 0 0 0 0 0 0 0 0 0 W 0.32396 - 6 + NaN NaN 109008.9 NaN 10983 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14240 63.353 NaN 95121 35 0 5583.9 0.261 + 34453 YPEVALHF 8 42 488.25096335667274 NaN 0 488.25140380859375 PEAK HCD FTMS 0 0 0 14233 11498.4384765625 0.44529657050116206 1 -0.02617645263671875 7 Unmodified _YPEVALHF_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 4.75600775471527 0.38822285293237185 2 A 1 7 4.6041 0 0 0.47246 0 0 130.08284604752674 770.3410738580686 900.4239199055953 0 0 0 0 0 0 0 0 0 + A 0.47246 + + 11 + NaN NaN 105581 NaN 10984 3254 14233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14242 63.358 NaN 623870 35 0 58124 0.327 + 32321 VYVDLGGSHVF 11 85 596.8037942801744 1191.5930356271488 2 596.8037719726562 MULTI HCD FTMS 0 0 0 14241 202351.78125 0.15491507976123306 8 -0.23240280151367188 1 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 96.36657018975838 0.015470569860761748 2 [YV]VD{I|L}GGSHV{M(Oxidation (M))|F} 11 0 + 99.46 0 0 8.3468 8.3468 91.698 0 0 0 8.933852901485295 8.933852901485295 8.933852901485295 9.16264035428867 0 3.504432191740108 1.6989700043360187 0.6747425010840047 0 + + [YV]VD{I|L}GGSHV{M(Oxidation (M))|F};[YV]VEVGGSHV{M(Oxidation (M))|F};[YV]VD{I|L}NSHV{M(Oxidation (M))|F};[YV]DV{I|L}GGSHV{M(Oxidation (M))|F};[YV]D{I|L}VGGSHV{M(Oxidation (M))|F};[YV]VERG[EP]P{M(Oxidation (M))|F};[YV][EP]GREPV{M(Oxidation (M))|F};[YV]DV{I|L}NSHV{M(Oxidation (M))|F};[YV][EP]GREVP{M(Oxidation (M))|F};[YV]VD{I|L}GH[SG]V{M(Oxidation (M))|F} 8.3468;7.5779;7.4385;6.5909;6.5717;6.4357;5.9898;5.872;5.7966;5.6371 +;-;-;-;-;-;-;-;-;- + 2508 + NaN NaN 183319.4 NaN 10985 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14243 63.362 NaN 575360 35 0 111850 0.261 + 8379 GYMEGYYTF 9 80 573.7258743048493 1145.4371956764985 2 573.7261352539062 MULTI HCD FTMS 0 0 0 14241 233397.734375 0.5868997760364062 -1 0.02617645263671875 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 107.99703571036002 0.003269392969029945 2 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 96.393 0 0 8.4153 8.4153 95.126 0 0 0 16.518637558036673 16.478174818886373 16.478174818886373 16.518637558036673 0 2.805462187404089 1.3010299956639813 0.8494850021680094 0 [YT]CEGYYT{M(Oxidation (M))|F};[YE]{[CT]|[{M(Oxidation (M))|F}G]}GYYT{M(Oxidation (M))|F};[YE]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YYT{M(Oxidation (M))|F};[YT]C[KP]GDDT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GYYT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ET]|[MV]}KGDDT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[DA]|[EG]}KGDDT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ET]|[MV]}KGEE[YG] 8.4153;6.9732;5.9288;5.8504;5.5779;4.6542;4.1934;3.514;3.4527;3.3131 -;-;-;-;-;-;-;-;-;- 734 NaN NaN 185400.5 NaN 10986 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14244 63.366 NaN 301670 35 0 19032 0.261 + 16831 LYECTGQFDF 10 66 611.7575771306042 1221.5006013280083 2 611.7578125 MULTI HCD FTMS 0 0 0 14241 96421.4921875 0.42593207781687786 3 -0.09164047241210938 3 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 18.373094154950223 0.33925629317698053 2 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 55.243 0 0 4.5226 0 0 305.13728530097814 0 305.13728530097814 0 47.17112346990216 0 0 0 2.3494850021680094 0 0 0.4247425010840047 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.5226 - 167 NaN NaN 127547.5 NaN 10987 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14245 63.369 NaN 324020 35 0 63941 0.262 + 14175 LAIETEAEL 9 59 494.7635132962857 987.5124736593714 2 494.763671875 MULTI HCD FTMS 0 0 0 14241 51383.078125 0.15104329337255676 -4 0.1007843017578125 4 Unmodified _LAIETEAEL_ ENSG00000013364|ENST00000357402|MVP 96.28474662873226 0.004361282420133734 2 {[QN]|[E{I|L}]|[KN]}A{I|L}TEAE{I|L} 9 2 + 78.594 0 0 7.9588 7.9588 88.66 0 0 0 3.0102999566398125 16.478174818886373 3.0102999566398125 3.0102999566398125 0 1.8494850021680094 0 0.8494850021680094 0 {[QN]|[E{I|L}]|[KN]}A{I|L}TEAE{I|L};{[CP]|[EA]}{I|L}{I|L}TEAE{I|L};{[QN]|[E{I|L}]|[KN]}A{[ET]|[MV]}{I|L}AE{I|L};{[CP]|[EA]}{I|L}{[ET]|[MV]}{I|L}AE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[RK]EAE{I|L} 7.9588;7.6539;5.2501;4.9452;4.2718 -;-;-;-;- 216 NaN NaN 163278.1 NaN 10988 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14246 63.373 NaN 334320 35 0 14221 0.261 + 292 AFMKGVFTF 9 67 532.2678798482494 1062.5212067632988 2 532.268310546875 MULTI HCD FTMS 0 0 0 14241 55754.3984375 0.13273479054815368 24 -0.6993865966796875 5 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 60.07390631473393 0.0174780869009295 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 3 50.366 0 0 4.7402 0 0 71.03865785842875 0 71.03865785842875 0 39.397037028505494 0 0 0 1.7887254899964358 0 0.7742275032520141 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.7402 - 122 + NaN NaN 144019.7 NaN 10989 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14247 63.376 NaN 191860 35 0 52073 0.261 + 10797 ISRMNQCSQFF 11 38 454.20950793039765 1359.606694391393 3 454.5440979003906 MULTI HCD FTMS 0 0 0 14241 25899.828125 0.44556762973772396 -5 0.10791778564453125 6 Unmodified _ISRMNQCSQFF_ REV__TLR1|p.K515N|1|0.74|ENSG00000174125|chr4:38797287-38797287|C/A|missense_variant 4.715918219556657 0.3982382512160552 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.6174 0 0 1194.5276366294772 0 1194.5276366294772 0 19.771212547196622 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6174 + + 5 + NaN NaN 112690.5 NaN 10990 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14248 63.379 NaN 146880 35 0 9827.6 0.261 + 30274 VKKIFVLVLL 10 55 586.414734541512 NaN 0 586.7911376953125 PEAK HCD FTMS 0 0 0 14241 9419.32421875 0.6525593233411318 -1 0.02617645263671875 7 Unmodified _VKKIFVLVLL_ REV__ENSG00000101017|ENST00000372285|CD40 0.45834013312273997 0.33979201340002624 2 {I|L} 1 -1 4.6041 0 0 0.39324 0 0 130.34042760973108 924.3592293858346 1054.6996569955656 0 0 0 0 0 0 0 0 0 {I|L} 0.39324 + + 1 + NaN NaN 120555.5 NaN 10991 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14249 63.383 NaN 230290 35 0 28345 0.261 -1 QCCQHVLL 8 56 529.2497123019573 1056.4848716707145 2 529.7510375976562 MULTI HCD FTMS 0 0 0 14241 7154.04345703125 0.12852781523958076 -1 0.02617645263671875 8 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))C(Carbamidomethyl (C))QHVLL_ ENST00000468492.5_3_10:14572436-14614290:-|nuORF 5.760428011301431 0.5334459684533844 2 T 1 -1 5.4846 0 0 0.51913 0 0 275.0194308521582 677.3985079400999 952.4179387922582 0 0 0 0 0 0 0 0 0 T 0.51913 - 14 + NaN NaN 135771.5 NaN 10992 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14250 63.386 NaN 260110 35 0 42311 0.261 + 35828 YYPYVYYKI 9 46 636.32108504351 1270.62761715382 2 636.3234252929688 MULTI HCD FTMS 0 0 0 14241 35560.68359375 0.48935964686038574 -3 0.07184600830078125 9 Unmodified _YYPYVYYKI_ ENSG00000155097|ENST00000518738|ATP6V1C1 30.224811164608877 0.11021837014094292 2 YYK[KC]YYK 8 4 47.128 0 0 3.709 0 0 0 128.07034111305748 128.07034111305748 31.64320017660792 0 0 0 0 0.7742275032520141 2 0 0 YYK[KC]YYK 3.709 - 54 NaN NaN 149188.8 NaN 10993 3255 14241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14252 63.391 NaN 1345800 35 0 266550 0.327 + 6569 FPLDLDVKM 9 103 547.2833450810227 1092.5521372288454 2 547.7708740234375 MULTI HCD FTMS 0 0 0 14251 65818.0859375 0.1516719513302539 25 -0.728851318359375 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 70.33199760932243 0.0089807860198535 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F} 9 2 + 60.522 0 0 5.5395 5.5395 83.714 0 0 0 26.346726628578935 10.10451712829392 10.10451712829392 1.2763625255165323 0 1.2491348669726234 0 0.5 0 {M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{I|L}P{M(Oxidation (M))|F}D{I|L}DKV{M(Oxidation (M))|F};{I|L}P{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DQV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVQ{M(Oxidation (M))|F};{I|L}P{M(Oxidation (M))|F}D{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{[SA]|[TG]}VVV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VV{M(Oxidation (M))|F} 5.5395;5.4227;5.3803;5.2635;4.6238;4.5355;4.4658;4.4646;4.3482;4.2808 -;+;-;-;-;-;-;-;-;- + 2394 + NaN NaN 296608.7 NaN 10994 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14253 63.395 NaN 1253900 35 0 93177 0.261 + 6727 FPQDRVFML 9 116 584.7945927180004 NaN 0 584.794677734375 PEAK HCD FTMS 0 0 0 14251 513831.25 0.9329609039982969 -3 0.08512115478515625 2 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 80.6760300276096 0.0027682388075221274 2 PQDRV{M(Oxidation (M))|F} 6 3 49.857 0 0 4.2701 0 0 147.06876622395356 275.1068110883436 422.17557731229715 0 0 0 0 0 2.524227503252014 0 0.6109243748081782 0.6109243748081782 + PQDRV{M(Oxidation (M))|F} 4.2701 + + 1102 + NaN NaN 303541.1 NaN 10995 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14254 63.399 NaN 909430 35 0 116490 0.261 + 29468 TYVENLRLL 9 80 560.8217480351958 1119.6289431371915 2 560.82177734375 MULTI HCD FTMS 0 0 0 14251 355227.03125 0.28741120725366803 10 -0.2814521789550781 3 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 125.0377797344192 0.0009059125702818869 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 110.82 0 0 9.8976 9.8976 96.223 0 0 0 14.942438699523933 14.942438699523933 14.942438699523933 14.942438699523933 0 2.805462187404089 2 0.9361818737241736 1.610924374808178 + + [YT]VEN{I|L}R{I|L}{I|L};TYVEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};TYVEGG{I|L}R{I|L}{I|L};[YN][KS]N{I|L}[VG]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]GG{I|L}R{I|L}{I|L} 9.8976;8.563;8.3557;7.7405;5.7308;5.462;4.6395 +;+;-;-;-;-;- + 488 NaN NaN 238805.2 NaN 10996 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14255 63.402 NaN 500100 35 0 62412 0.261 + 5190 FFDAELSQM 9 67 552.2393087556661 1102.4640645781321 2 552.2393188476562 MULTI HCD FTMS 0 0 0 14251 172956.34375 0.031218497233306886 47 -1.327606201171875 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 96.36657018975838 0.004359138328518304 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 81.635 0 0 7.4048 7.4048 91.015 0 0 0 4.762036441594191 61.686296826174996 4.762036441594191 9.208187539523749 0 2.7302046884880937 0 0.75 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F} 7.4048;6.5695;2.0971;2.0253 +;-;-;- + 451 NaN NaN 161706.2 NaN 10997 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14256 63.405 NaN 502630 35 0 38452 0.261 + 6899 FPVEHVQLL 9 78 541.3056151428198 1080.5966773524394 2 541.3059692382812 MULTI HCD FTMS 0 0 0 14251 344934.96875 0.7376396667271681 -3 0.08512115478515625 5 Unmodified _FPVEHVQLL_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 38.175570920033316 0.07371992880350783 2 VQ{I|L}{I|L} 4 5 40.745 0 0 3.7706 0 0 609.2905140607437 0 609.2905140607437 0 13.081845230116205 0 0 0 0.8807196863200843 0 0 0 + VQ{I|L}{I|L} 3.7706 + + 735 NaN NaN 169632.2 NaN 10998 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14257 63.409 NaN 264440 35 0 39329 0.261 -1 ECFLDKHHE 9 47 607.7666793565093 1213.5188057798184 2 607.7672119140625 MULTI HCD FTMS 0 0 0 14251 234474.46875 0.9038143577099881 4 -0.11785125732421875 6 Carbamidomethyl (C) _EC(Carbamidomethyl (C))FLDKHHE_ ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B 14.838274106304384 0.23215694253501695 2 YPWT{M(Oxidation (M))|F} 5 -1 44.45 0 0 3.6629 0 0 501.1960041214184 0 501.1960041214184 0 39.846368802282015 0 0 0 1.6747425010840047 0 0.8494850021680094 0 YPWT{M(Oxidation (M))|F} 3.6629 - 28 + NaN NaN 130520.5 NaN 10999 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14258 63.412 NaN 182800 35 0 48920 0.263 -1 EMFDVSVV 8 48 471.217956339415 940.4213597456301 2 471.2178039550781 MULTI HCD FTMS 0 0 0 14251 188318.578125 1 0 0 7 Oxidation (M) _EM(Oxidation (M))FDVSVV_ ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000136531|Q99250-2|SCN2A 9.347437153973935 0.5250182646323369 2 VV 2 -1 25.969 0 0 2.7614 0 0 724.274025039453 0 724.274025039453 0 20.48455006504028 0 0 0 0.5 0 0 0 VV 2.7614 + + 6 NaN NaN 136637.1 NaN 11000 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14259 63.415 NaN 131640 35 0 7706.2 0.261 + 25942 SPDAKIFCL 9 49 497.2575770540871 992.5006011749742 2 497.25738525390625 MULTI HCD FTMS 0 0 0 14251 68440.421875 0.2970520739215758 10 -0.2814521789550781 8 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 32.037481411007896 0.10189719824197178 2 [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 58.121 0 0 5.8561 5.8561 93.112 0 0 0 7.147642715192504 37.15227486541373 7.147642715192504 58.12137499549429 0 1.9247425010840047 0 0 0 + + [PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 5.8561 + + 43 NaN NaN 108579.2 NaN 11001 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14260 63.419 NaN 99841 35 0 7691.1 0.261 + 29846 VETPCPLPQ 9 47 492.2471677032254 NaN 0 492.24725341796875 PEAK HCD FTMS 0 0 0 14251 45429.609375 0.8974726416994442 6 -0.16682815551757812 9 Unmodified _VETPCPLPQ_ REV__ENST00000328933.9_1_22:39777925-39778135:+|nuORF 10.823927491677226 0.2427956001690155 2 {I|L} 1 -1 10.485 0 0 1.0672 0 0 243.12933188906953 623.2504664058399 866.3797982949095 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 1.0672 + + 9 + NaN NaN 106841.4 NaN 11002 3256 14251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14262 63.424 NaN 1315100 35 0 143320 0.327 + 30631 VPDHVVWSL 9 95 526.2817979800001 1050.5490430268 2 526.2821044921875 MULTI HCD FTMS 0 0 0 14261 667725.25 0.20511345052700597 11 -0.32340240478515625 1 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 85.27202061508552 0.004649858145912257 2 {[RE]|[WV]}YVVWS{I|L} 8 3 + 67.727 0 0 6.4468 6.4468 87.833 0 0 0 10.511525224473814 27.839322000954283 10.511525224473814 7.768024924119672 0 1.3252574989159953 0 1.110924374808178 0 {[RE]|[WV]}YVVWS{I|L};{[RE]|[WV]}YVVWTV;{[RE]|[WV]}YVWVS{I|L};[HV][DP]VVWS{I|L};{[RE]|[WV]}YVWSV{I|L};{[RE]|[WV]}YVWVTV;[HV][DP]VVWTV;[HV][DP]VWVS{I|L};{[RE]|[WV]}YVWS{I|L}V;{[TV]|[{I|L}S]}WV[YR]D{I|L} 6.4468;5.7074;5.5665;5.0733;4.9176;4.8271;4.3339;4.193;4.1782;3.8642 -;-;-;-;-;-;-;-;-;- 2656 NaN NaN 296421 NaN 11003 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14263 63.428 NaN 1197800 35 0 141660 0.255 + 26809 SYIDVAVKL 9 89 504.2924220247276 1006.5702911162552 2 504.30914306640625 MULTI HCD FTMS 0 0 0 14261 505240.46875 0.3465446692673726 -1 0.032794952392578125 2 Unmodified _SYIDVAVKL_ ENSG00000087301|ENST00000281741|TXNDC16 79.59630418116434 0.005983006570063981 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVAVK{I|L} 9 0 + 62.743 0 0 6.2333 6.2333 90.244 0 0 0 1.3071968632008435 1.3071968632008435 1.3071968632008435 11.593793813122062 0 2.579689690656103 0 0.7614393726401688 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVAVK{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DVG{I|L}K{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D[K{I|L}][VG]{I|L} 6.2333;5.0815;2.4666 +;-;- + 243 NaN NaN 271233.5 NaN 11004 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14264 63.431 NaN 537190 35 0 64798 0.261 + 29469 TYVENLRLL 9 79 560.8217480351958 1119.6289431371915 2 560.8219604492188 MULTI HCD FTMS 0 0 0 14261 193697.0625 0.15671866630958758 11 -0.32340240478515625 3 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 67.83816525789305 0.009787749748478139 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 82.202 0 0 7.3419 7.3419 90.893 0 0 0 3.8464343345171415 3.8464343345171415 3.8464343345171415 9.208187539523749 0 2.4604093769761874 2 0 0.3494850021680094 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YT]VE[R{I|L}]N{I|L}{I|L};[YT]VE[R{I|L}]GG{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT][R{I|L}]N{I|L}{I|L} 7.3419;6.5194;5.6193;4.7968;2.5844;1.2053 +;-;-;-;-;- + 197 + NaN NaN 171523.5 NaN 11005 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14265 63.435 NaN 465080 35 0 35049 0.261 + 7039 FPYVRDFVM 9 68 595.2893774451072 1188.5642019570143 2 595.2894287109375 MULTI HCD FTMS 0 0 0 14261 206783.34375 0.6017328858651494 1 -0.02605438232421875 4 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 70.33199760932243 0.0089807860198535 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 80.416 0 0 6.7658 6.7658 85.636 0 0 0 17.985775332874283 10 10 0.9640156839957825 0 1.8807196863200843 2 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{M(Oxidation (M))|F}PYVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVA{[CT]|[{M(Oxidation (M))|F}G]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}[K{I|L}]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT][WK][QA]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT][HA][K{I|L}]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7658;6.6847;5.2526;4.5604;4.2209;4.0309;3.7391;3.5287;1.9993;1.5975 -;+;+;-;-;-;-;-;-;- + 588 NaN NaN 155171 NaN 11006 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14266 63.438 NaN 489950 35 0 101940 0.261 + 24718 RYLTVATVF 9 74 535.3056100150868 1068.5966670969735 2 535.3057250976562 MULTI HCD FTMS 0 0 0 14261 116963.953125 0.022579456039018515 33 -0.9482612609863281 5 Unmodified _RYLTVATVF_ ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;nc|ENSG00000258947|Q13509-2|TUBB3 32.78568957990786 0.09846250359632436 2 ATV{M(Oxidation (M))|F} 4 5 51.912 0 0 4.858 0 0 632.3617406020255 0 632.3617406020255 0 36.828598685782424 0 0 0 1.6747425010840047 0 0.9247425010840047 0 + ATV{M(Oxidation (M))|F} 4.858 + + 218 NaN NaN 157405.1 NaN 11007 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14267 63.441 NaN 348560 35 0 24910 0.261 + 12463 KQPEDYFYL 9 67 601.7911579991085 1201.5677630650168 2 601.7913818359375 MULTI HCD FTMS 0 0 0 14261 72209.5546875 0.1572962023003704 9 -0.2486572265625 6 Unmodified _KQPEDYFYL_ ENSG00000099331|ENST00000682292|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000099331|Q13459-2|MYO9B 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}Y{I|L} 3 6 35.445 0 0 2.9499 0 0 760.3385487287125 0 760.3385487287125 0 -0.7846345946782662 -0.7846345946782662 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}Y{I|L} 2.9499 + + 39 NaN NaN 154876.9 NaN 11008 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14268 63.445 NaN 333360 35 0 14257 0.261 + 5903 FPDKVAIQL 9 91 515.800393316049 1029.586233698898 2 515.8004150390625 MULTI HCD FTMS 0 0 0 14261 50161.66015625 0.07362741085416107 26 -0.7517509460449219 7 Unmodified _FPDKVAIQL_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000068976|P11217-2|PYGM;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant 24.990960013464015 0.14443998892849796 2 {M(Oxidation (M))|F}P[DN]{I|L}{I|L}KA{I|L} 9 5 + 25.433 0 0 2.4702 2.4702 86.467 0 0 0 3.7952268453798723 1.4488580430978573 1.4488580430978573 13.883330189478448 0 0.6382104921644451 0 0 0 {M(Oxidation (M))|F}P[DN]{I|L}{I|L}KA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}{[TV]|[{I|L}S]}{I|L} 2.4702;1.1218 -;- 165 + NaN NaN 152602.7 NaN 11009 3257 14261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14270 63.45 NaN 5861100 35 0 1057500 0.327 + 29093 TYGEIFEKF 9 142 567.2792195549672 1132.5438861767343 2 567.2796630859375 MULTI HCD FTMS 0 0 0 14269 4463371 0.21228239058710727 20 -0.5849494934082031 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 136.39213081522345 0.00021731600835925866 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 112.77 0 0 9.957 9.957 97.105 0 0 0 44.03696138719644 16.478174818886373 16.478174818886373 21.13350116841228 0 2.6237125054200234 2 0.9436726795685343 0.2302046884880938 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT]GEE{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};[YT]GEE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K;[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}ATE{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YG]TEE{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{I|L}TK{M(Oxidation (M))|F} 9.957;8.091;7.0655;6.7945;6.5828;6.4984;6.2216;6.153;6.1005;5.6295 +;-;-;-;-;-;-;-;-;- + 18204 + NaN NaN 824101.2 NaN 11010 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14271 63.454 NaN 1761000 35 0 188820 0.261 + 13266 KYMDINFDF 9 100 604.7680784656989 1207.5216039981976 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14269 1069811.25 0.46299427949707356 6 -0.17024612426757812 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 128.57297698046145 0.0006915168155602875 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 87.136 0 0 7.2161 7.2161 88.217 0 0 0 3.2568864632742844 35.19438623093008 3.2568864632742844 5.255762612236907 0 2.579689690656103 0 0.9634679910804405 1.1861818737241734 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.2161;6.7809;6.6151;6.4536;6.1798;6.0183;5.8525;5.4986;5.4173;5.4173 +;-;-;-;-;-;-;-;-;- + 5152 NaN NaN 377652.4 NaN 11011 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14272 63.458 NaN 1097200 35 0 140700 0.261 + 1287 AYMPHTFFI 9 86 571.770448645615 1141.52634435803 2 571.7705688476562 MULTI HCD FTMS 0 0 0 14269 860142.0625 0.9429946317110978 -1 0.02605438232421875 3 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 131.29775728308752 0.0005262696486345744 2 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 94.478 0 0 8.2765 8.2765 97.127 0 0 0 56.28267223943531 10.202264589233394 10.202264589233394 53.77636252551653 0 2.4916440611282624 2 0.75 0 + + AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TS{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};A[KP]E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{M(Oxidation (M))|F}{[ET]|[MV]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T[YR][{M(Oxidation (M))|F}V]Y 8.2765;3.5655;2.666;2.5503;1.6508;1.3022;0.40271;0.33637;0.094626 +;-;-;-;-;-;-;-;- + 1216 + NaN NaN 275227 NaN 11012 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14273 63.461 NaN 396170 35 0 46914 0.262 + 33912 YLPRNCPA 8 71 467.23355508985406 932.4525572465081 2 467.2335510253906 MULTI HCD FTMS 0 0 0 14269 300768.6875 0.765722125217862 -1 0.02605438232421875 4 Unmodified _YLPRNCPA_ ENST00000395066.7_1_15:74907479-74907686:+|nuORF 2.8892196856762586 0.5377058178582064 2 [Y{I|L}][HS]WGG 7 6 18.204 0 0 1.9523 0 0 0 129.08937300262065 129.08937300262065 7.235381958267553 0 0 0 0 0 2 0 0 [Y{I|L}][HS]WGG 1.9523 - 52 NaN NaN 153025.1 NaN 11013 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14274 63.464 NaN 327800 35 0 27124 0.261 + 6623 FPLSESQTL 9 69 511.2639001139767 NaN 0 511.2638244628906 PEAK HCD FTMS 0 0 0 14269 104900.5859375 1 0 0 5 Unmodified _FPLSESQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 20.41453444215458 0.1846157837989407 2 {I|L}Q{I|L}KQ{I|L} 6 6 16.873 0 0 1.6533 0 0 132.00561082245207 162.02317224674064 294.02878306919274 0 0 0 0 0 0.3054621874040891 0 0 0.3252574989159953 {I|L}Q{I|L}KQ{I|L} 1.6533 - 145 + NaN NaN 137203.2 NaN 11014 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14275 63.468 NaN 118350 35 0 7134.5 0.261 -1 MAEPPRMMDF 10 47 620.7631673309509 1239.5117817287016 2 620.7633056640625 MULTI HCD FTMS 0 0 0 14269 66089.109375 0.6510468583474993 6 -0.17024612426757812 6 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 15.248480904072842 0.3684828712757339 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.938 0 0 3.7868 0 0 698.29496962715 0 698.29496962715 0 46.938200260161125 0 0 0 1.5 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7868 - 50 NaN NaN 98650 NaN 11015 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14276 63.471 NaN 260330 35 0 36217 0.262 + 8506 HAFSVEPLL 9 53 506.77662931562105 1011.5387056980421 2 506.7768249511719 MULTI HCD FTMS 0 0 0 14269 83153.140625 0.6258979978630229 -3 0.09164047241210938 7 Unmodified _HAFSVEPLL_ ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF 20.453626601364224 0.18364154288633264 2 EP{I|L}{I|L} 4 5 44.68 0 0 4.4171 0 0 541.2645363507373 0 541.2645363507373 0 35.48236845048706 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + EP{I|L}{I|L} 4.4171 + + 32 NaN NaN 130480.7 NaN 11016 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14277 63.474 NaN 133670 35 0 8672.2 0.261 + 474 ALRENILF 8 62 488.28466573416824 NaN 0 487.9230041503906 PEAK HCD FTMS 0 0 0 14269 22047.21875 0.5364086442558933 -1 0.02605438232421875 8 Unmodified _ALRENILF_ ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-3|ADK 21.74664581756881 0.38360090182421286 2 {M(Oxidation (M))|F} 1 7 10.797 0 0 1.1079 0 0 184.12046564626775 640.3418062799436 824.4622719262113 0 0 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F} 1.1079 + + 9 + NaN NaN 110417.1 NaN 11017 3258 14269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14279 63.479 NaN 2126600 35 0 1034800 0.327 -1 0 83 427.30263388320066 852.5907148332013 2 427.3026428222656 MULTI HCD FTMS 0 0 0 14278 1480267.125 1 0 0 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.4331 0 0 687.5116875888639 0 687.5116875888639 0 0.6246936830414995 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4331 - 44 + NaN NaN 410422.7 NaN 11018 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14280 63.483 NaN 1904200 35 0 174180 0.261 + 6739 FPQEVKDLL 9 105 544.8030623285159 1087.5915717238317 2 544.80322265625 MULTI HCD FTMS 0 0 0 14278 800065.875 0.9173568252894453 1 -0.0294952392578125 2 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 125.0377797344192 0.0009059125702818869 2 {M(Oxidation (M))|F}PQEVKD{I|L}{I|L} 9 0 + 77.445 0 0 7.1208 7.1208 89.473 0 0 0 20.92019015987826 4.542469191813254 4.542469191813254 8.816869362086834 0 2.3243923658886185 0 1.5629529932484498 0.7302046884880937 + + {M(Oxidation (M))|F}PQEVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}QPE;{M(Oxidation (M))|F}P[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V]QPE;{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}[AG]PE;{NN|[MP]|[D{I|L}]|[EV]}{I|L}KV{M(Oxidation (M))|F}QPE;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L}V{M(Oxidation (M))|F}QPE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V][AG]PE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}N{I|L}{I|L}PE;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}[{I|L}V]QPE 7.1208;6.3101;6.2741;5.7981;5.4635;5.2117;5.1474;4.9515;4.83;4.6354 +;-;-;-;-;-;-;-;-;- + 5005 + NaN NaN 371985.4 NaN 11019 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14281 63.487 NaN 1026200 35 0 171160 0.261 + 6570 FPLDLDVKM 9 85 547.2833450810227 1092.5521372288454 2 547.7698364257812 MULTI HCD FTMS 0 0 0 14278 47898.6640625 0.11037823025376826 28 -0.814178466796875 3 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 61.60191391372663 0.015340508911304802 2 VQTHVVV{M(Oxidation (M))|F} 8 7 49.651 0 0 4.5445 0 0 165.08207150157176 0 165.08207150157176 0 22.09183145787911 0 0 0 0.805462187404089 0 0.805462187404089 0 VQTHVVV{M(Oxidation (M))|F} 4.5445 - 1371 + NaN NaN 255858.1 NaN 11020 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14282 63.49 NaN 584540 35 0 70108 0.261 + 32392 VYWKIYNSI 9 84 593.3188197240393 1184.6230865148784 2 593.3192138671875 MULTI HCD FTMS 0 0 0 14278 396037.625 1 0 0 4 Unmodified _VYWKIYNSI_ ENSG00000115524|ENST00000335508|SF3B1 128.93241758739586 0.0006697181619526092 2 VYWK{I|L}YNS{I|L} 9 0 + 111.9 0 0 9.4457 9.4457 95.957 0 0 0 19.278259348524358 19.278259348524358 19.278259348524358 15.203037561203843 0 2.973197507588033 2 1.4119543704721593 1.024227503252014 + + VYWK{I|L}YNS{I|L};VYWK{I|L}YGGS{I|L};[YV]WK{I|L}YNS{I|L};[YV]WK{I|L}YGGS{I|L};[YV]WK{[QS]|[NT]}[YV]{I|L};[YV]{[QS]|[NT]}V{I|L}Y[WK];[WK][YV]{I|L}YNS{I|L};{[TV]|[{I|L}S]}[{M(Oxidation (M))|F}T]K{I|L}Y[WQ];{[TV]|[{I|L}S]}NYV{I|L}Y[WK];[WK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{[ET]|[MV]}S{I|L} 9.4457;8.1623;7.8183;7.041;4.657;3.9888;3.5544;3.4805;3.3944;3.114 +;-;+;-;-;-;-;-;-;- + 713 + NaN NaN 196344.7 NaN 11021 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14283 63.494 NaN 391200 35 0 45962 0.261 + -1 FFFFCALI 8 78 532.7661912563215 1063.5178295794428 2 532.775146484375 MULTI HCD FTMS 0 0 0 14278 68512.6875 0.45701674816713833 -4 0.12114715576171875 5 Carbamidomethyl (C) _FFFFC(Carbamidomethyl (C))ALI_ REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1 24.20995872069341 0.415665547393293 2 [PS]AW[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]A{I|L}{I|L} 9 -1 + 39.147 0 0 3.6809 3.6809 82.974 0 0 0 3.652792693512417 0.6424927368726046 0.6424927368726046 5.76606256887672 0 1.5044321917401078 0 0 0 [PS]AW[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]A{I|L}{I|L};SP{[ET]|[MV]}[HV]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PS][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]A{I|L}{I|L};SPAW{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[ET]|[MV]};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}[Y{M(Oxidation (M))|F}]{I|L};SPA{[DA]|[EG]}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[ET]|[MV]} 3.6809;3.1387;1.6599;1.5346;0.74327;0.66882 -;-;-;-;-;- 219 NaN NaN 152407.6 NaN 11022 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14284 63.497 NaN 363100 35 0 25105 0.261 + 20031 NYIGLINRI 9 63 538.3163769983624 1074.6182010635248 2 538.3167724609375 MULTI HCD FTMS 0 0 0 14278 123299.0703125 0.02420713578195037 42 -1.1936264038085938 6 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 62.57269311338072 0.013982455292112035 2 [YN]{I|L}G{I|L}{I|L}[RN]{I|L} 9 0 + 72.546 0 0 6.7509 6.7509 92.916 0 0 0 13.868865538569466 52.78582397795077 13.868865538569466 22.417665879116626 0 2.274227503252014 1.6989700043360187 0 0.7742275032520141 + + [YN]{I|L}G{I|L}{I|L}[RN]{I|L};[YN]{I|L}G{I|L}[RN]{I|L}{I|L} 6.7509;4.6648 +;- + 153 NaN NaN 142017.5 NaN 11023 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14285 63.5 NaN 160140 35 0 20048 0.261 + 35829 YYPYVYYKI 9 42 636.32108504351 1270.62761715382 2 636.3215942382812 MULTI HCD FTMS 0 0 0 14278 55484.71484375 0.7635393282163682 1 -0.0294952392578125 7 Unmodified _YYPYVYYKI_ ENSG00000155097|ENST00000518738|ATP6V1C1 13.50788311687929 0.24365122550260465 2 YYK 3 6 32.447 0 0 2.5536 0 0 0 813.3838176755575 813.3838176755575 32.447274948966935 0 0 0 0 0.5 2 0 0 + YYK 2.5536 + + 7 NaN NaN 120034.6 NaN 11024 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14286 63.504 NaN 227970 35 0 15370 0.264 + -1 EYSCIEEMCE 10 72 450.4952547030921 1348.4639347094762 3 450.82952880859375 MULTI HCD FTMS 0 0 0 14278 42680.76953125 0.4801055221105266 2 -0.058940887451171875 8 2 Carbamidomethyl (C) _EYSC(Carbamidomethyl (C))IEEMC(Carbamidomethyl (C))E_ REV__ENSG00000130032|ENST00000674457|PRRG3 1.9063754702782614 0.46521295622613185 2 [YT]GT 4 -1 29.693 0 0 2.202 0 0 0 923.2621579362918 923.2621579362918 17.21848749616356 0 0 0 0 0 2 0 0 [YT]GT 2.202 - 39 NaN NaN 141531.3 NaN 11025 3259 14278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14288 63.509 NaN 329350 35 0 74700 0.327 + 14176 LAIETEAEL 9 48 494.7635132962857 987.5124736593714 2 494.7637023925781 MULTI HCD FTMS 0 0 0 14287 179969.25 0.5290291904984821 1 -0.029445648193359375 1 Unmodified _LAIETEAEL_ ENSG00000013364|ENST00000357402|MVP 92.4914307365334 0.004460681868130716 2 ETEAE{I|L} 6 3 73.365 0 0 7.4293 0 0 297.2042408673844 0 297.2042408673844 0 58.76078152608656 0 0 0 2.2302046884880937 0 1.2302046884880937 0 + ETEAE{I|L} 7.4293 + + 153 NaN NaN 140165.5 NaN 11026 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14289 63.513 NaN 379710 35 0 57142 0.261 + 8380 GYMEGYYTF 9 87 573.7258743048493 1145.4371956764985 2 573.7257080078125 MULTI HCD FTMS 0 0 0 14287 160442.234375 0.4034465530422658 4 -0.11124420166015625 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 68.08070601005525 0.009709267492204555 2 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 83.879 0 0 7.3229 7.3229 94.723 0 0 0 20.157942671832316 68.14880245079138 20.157942671832316 32.99803764475705 0 1.774227503252014 1.3010299956639813 0.805462187404089 0 [YT]CEGYYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GYYT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]E{M(Oxidation (M))|F}[YG] 7.3229;4.4421;2.4465;2.0334;1.4828;1.0697 -;-;-;-;-;- 297 NaN NaN 150191.9 NaN 11027 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14290 63.517 NaN 347830 35 0 24997 0.261 + 32033 VYPMPQDFVP 10 66 596.7916771438141 NaN 0 596.8041381835938 PEAK HCD FTMS 0 0 0 14287 11976.265625 0.3390281372684425 2 -0.048976898193359375 3 Unmodified _VYPMPQDFVP_ ENSG00000282815|ENST00000695840|TEX13C 7.289230182591677 0.3339457182549222 2 PVD{I|L}GG 6 8 27 0 0 2.2659 0 0 165.0544127989088 485.2144869440063 650.2688997429151 0 0 0 0 0 0 0 0 0 PVD{I|L}GG 2.2659 - 333 + NaN NaN 144026.3 NaN 11028 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14291 63.52 NaN 299650 35 0 30792 0.262 + 33654 YKDLKAGLL 9 68 510.80785155120896 1019.6011501692179 2 510.8079528808594 MULTI HCD FTMS 0 0 0 14287 152545.671875 1 0 0 4 Unmodified _YKDLKAGLL_ REV__ENSG00000164304|ENST00000502583|CAGE1;REV__nc|ENSG00000164304|Q8TC20-2|CAGE1;REV__nc|ENSG00000164304|Q8TC20-3|CAGE1;REV__nc|ENSG00000164304|Q8TC20|CAGE1 29.84058131909904 0.11198220037953927 2 {I|L}Q{I|L}{I|L} 4 -1 44.923 0 0 4.4059 0 0 534.2784901349625 0 534.2784901349625 0 28.72486274231747 0 0 0 1.25 0 0 0.3494850021680094 {I|L}Q{I|L}{I|L} 4.4059 - 181 NaN NaN 134274.3 NaN 11029 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14292 63.523 NaN 223910 35 0 34662 0.261 -1 ACGNDDCR 8 44 455.66022554386427 909.3058981545286 2 455.66033935546875 MULTI HCD FTMS 0 0 0 14287 54378.1875 0.18006011171764588 -7 0.202972412109375 5 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.5392561982033289 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.2271150508161 0 744.2271150508161 0 13.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 5 + NaN NaN 137985 NaN 11030 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14293 63.526 NaN 211850 35 0 17454 0.261 + 34144 YPAHFGQLECL 11 57 639.3027957490727 1276.5910385649454 2 639.3030395507812 MULTI HCD FTMS 0 0 0 14287 74168.90625 0.6396312062509845 2 -0.048976898193359375 6 Unmodified _YPAHFGQLECL_ ENSG00000166747|ENST00000299980|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF;nc|ENSG00000166747|O43747-2|AP1G1 18.373094154950223 0.29699704000378496 2 {I|L}EC{I|L} 4 7 36.938 0 0 2.8935 0 0 800.3616093876674 0 800.3616093876674 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}EC{I|L} 2.8935 + + 73 NaN NaN 134649.5 NaN 11031 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14294 63.53 NaN 203340 35 0 11404 0.261 + 16832 LYECTGQFDF 10 60 611.7575771306042 1221.5006013280083 2 611.7579956054688 MULTI HCD FTMS 0 0 0 14287 67195.8359375 0.2968307311179716 8 -0.23834609985351562 7 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 13.614867670302875 0.3837631382804675 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 45.433 0 0 3.7194 0 0 680.2827625959 0 680.2827625959 0 37.361081649832784 0 0 0 1.5 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7194 - 38 NaN NaN 126375.2 NaN 11032 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14295 63.533 NaN 277810 35 0 18646 0.261 + 2481 DRSNESIKHN 10 67 600.2903356944154 NaN 0 600.3094482421875 PEAK HCD FTMS 0 0 0 14287 11995.8779296875 1 0 0 8 Unmodified _DRSNESIKHN_ ENSG00000140557|ENST00000268164|ST8SIA2 12.240655878213236 0.32970798410958835 2 {I|L}ND{I|L}E 5 8 21.938 0 0 1.8304 0 0 327.08992415442157 284.17279993228755 611.2627240867091 0 0 0 0 0 0 0 0 0 {I|L}ND{I|L}E 1.8304 - 70 + NaN NaN 138958.8 NaN 11033 3260 14287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14297 63.538 NaN 1035300 35 0 82460 0.327 + 6728 FPQDRVFML 9 103 584.7945927180004 NaN 0 584.7947998046875 PEAK HCD FTMS 0 0 0 14296 328836.0625 0.5970660409175979 2 -0.05231475830078125 1 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 90.13494162714682 7.175829756235777E-05 2 PQDRV{M(Oxidation (M))|F} 6 3 58.458 0 0 5.0068 0 0 147.06840786570416 275.1066988580688 422.17510672377296 0 0 0 0 0 2.7302046884880937 0 0.6382104921644451 0.566901560044258 + PQDRV{M(Oxidation (M))|F} 5.0068 + + 1294 + NaN NaN 248125 NaN 11034 3261 14296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14298 63.542 NaN 334450 35 0 11815 0.261 + -1 APMPNSRGLN 10 85 557.7697411925591 1113.524929451918 2 557.7837524414062 MULTI HCD FTMS 0 0 0 14296 13111.4033203125 0.175186127342491 21 -0.6077079772949219 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))APM(Oxidation (M))PNSRGLN_ REV__ENST00000296043.6_1_4:77651961-77652030:+|nuORF 10.073929032068715 0.4168838835836452 2 {M(Oxidation (M))|F}VYG{M(Oxidation (M))|F} 5 -1 30.433 0 0 2.733 0 0 482.22190318414306 0 482.22190318414306 0 16.721675119240516 0 0 0 0 0 0 0 {M(Oxidation (M))|F}VYG{M(Oxidation (M))|F} 2.733 - 934 + NaN NaN 137453.1 NaN 11035 3261 14296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14299 63.546 NaN 248090 35 0 22826 0.261 + 10452 IPDHPDLLL 9 60 516.789973957599 NaN 0 516.790283203125 PEAK HCD FTMS 0 0 0 14296 64269.56640625 0.4190883761713607 2 -0.05231475830078125 3 Unmodified _IPDHPDLLL_ ENSG00000075539|ENST00000358350|FRYL 25.399314129420986 0.1511568710901456 2 {I|L}{I|L} 2 7 15.217 0 0 1.4751 0 0 131.09453172151228 671.2781466119749 802.3726783334871 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 1.4751 + + 27 + NaN NaN 121951 NaN 11036 3261 14296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14300 63.549 NaN 397170 35 0 75537 0.261 -1 SPGSPVILQM 10 72 522.7729075066111 1043.531262080022 2 522.7725219726562 MULTI HCD FTMS 0 0 0 14296 23745.658203125 0.22289543288084376 -7 0.20626449584960938 4 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 22.736283301280096 0.29844449404982915 2 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 6 -1 42.273 0 0 4.0509 0 0 263.18301267956116 0 263.18301267956116 0 35.283030065732234 0 0 0 1.5 0 0 0.6382104921644451 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{M(Oxidation (M))|F} 4.0509 - 145 + NaN NaN 161891.5 NaN 11037 3261 14296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14301 63.553 NaN 148760 35 0 19227 0.261 + -1 NMWKYNGLI 9 42 577.7866707727143 1153.5587886122285 2 577.7891235351562 MULTI HCD FTMS 0 0 0 14296 37373.9453125 0.0869814954737436 58 -1.5922355651855469 5 Oxidation (M) _NM(Oxidation (M))WKYNGLI_ REV__ENSG00000068366|ENST00000672401|ACSL4;REV__nc|ENSG00000068366|O60488|ACSL4 4.3292370932331545 0.3181982124262546 2 {I|L}{I|L} 2 -1 25.217 0 0 2.186 0 0 909.3758541809293 0 909.3758541809293 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.186 + + 7 NaN NaN 109088.3 NaN 11038 3261 14296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14303 63.558 NaN 794680 35 0 87577 0.327 + 30632 VPDHVVWSL 9 95 526.2817979800001 1050.5490430268 2 526.2822875976562 MULTI HCD FTMS 0 0 0 14302 352290.125 0.10821732909657115 16 -0.4769706726074219 1 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 74.92900055777586 0.007493270374442853 2 {[RE]|[WV]}YVVWS{I|L} 8 3 + 76.081 0 0 7.2421 7.2421 91.416 0 0 0 18.015836698588146 37.487737688117235 18.015836698588146 9.247425010840047 0 1.3252574989159953 0.9208187539523752 0.8494850021680094 0 {[RE]|[WV]}YVVWS{I|L};{[RE]|[WV]}YVWVS{I|L};{[RE]|[WV]}YVVWTV;{[RE]|[WV]}YVWSV{I|L};{[RE]|[WV]}YVWVTV;{[RE]|[WV]}YVWS{I|L}V;{I|L}QY{[QN]|[E{I|L}]|[KN]}WS{I|L};VP[HD]VVWS{I|L};V{M(Oxidation (M))|F}{[SA]|[TG]}{[QN]|[E{I|L}]|[KN]}WS{I|L};{[TV]|[{I|L}S]}W{[QN]|[E{I|L}]|[KN]}QY{I|L} 7.2421;6.3618;6.2713;5.9089;5.391;4.9382;4.0159;3.7401;3.6739;3.5793 -;-;-;-;-;-;-;+;-;- + 2146 NaN NaN 217311.7 NaN 11039 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14304 63.562 NaN 472380 35 0 49726 0.261 + 6900 FPVEHVQLL 9 86 541.3056151428198 1080.5966773524394 2 541.3058471679688 MULTI HCD FTMS 0 0 0 14302 209009 0.4469634657851102 3 -0.09510040283203125 2 Unmodified _FPVEHVQLL_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 85.64151623876279 0.004640175941193596 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VEHVQ{I|L}{I|L} 9 0 + 66.902 0 0 6.1912 6.1912 91.264 0 0 0 13.075827810259213 40.47492166357429 13.075827810259213 16.267959391884546 0 1.4489700043360187 1.5228787452803376 0 0.7059771852360797 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VEHVQ{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VEHV[AG]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]HVQ{I|L}{I|L};{M(Oxidation (M))|F}PVEHVQ{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]HV[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TP][WP]Q{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}[DP]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}E[VP]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[DP]{I|L} 6.1912;4.6857;4.2389;2.993;2.7334;2.4588;1.5494;0.22851;0.13883 +;-;-;+;-;-;-;-;- + 523 NaN NaN 162067.7 NaN 11040 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14305 63.566 NaN 640730 35 0 61018 0.261 + 5191 FFDAELSQM 9 67 552.2393087556661 1102.4640645781321 2 552.2394409179688 MULTI HCD FTMS 0 0 0 14302 127195.609375 0.022958717172594144 53 -1.4719047546386719 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 92.65332237495696 0.004456439685314431 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 77.63 0 0 7.0415 7.0415 90.354 0 0 0 4.762036441594191 61.28144697160131 4.762036441594191 9.208187539523749 0 1.9247425010840047 0 1.1549471895720984 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F} 7.0415;6.2062 +;- + 407 NaN NaN 193346 NaN 11041 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14306 63.569 NaN 760250 35 0 117600 0.261 + -1 FAPICCALI 9 81 532.7661912563215 1063.5178295794428 2 532.766357421875 MULTI HCD FTMS 0 0 0 14302 123561.734375 0.8242237182996831 -1 0.01953125 4 2 Carbamidomethyl (C) _FAPIC(Carbamidomethyl (C))C(Carbamidomethyl (C))ALI_ REV__ENSG00000074964|ENST00000361221|ARHGEF10L;REV__ENST00000469726.5_1_1:17942561-18023872:+|nuORF;REV__nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;REV__nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L 28.173230860318316 0.11963627304438548 2 EA{I|L}{I|L} 4 -1 42.779 0 0 4.0224 0 0 619.2587757794937 0 619.2587757794937 0 -2.5118100160192114 -2.5118100160192114 0 0 1.305462187404089 0 0.3807196863200844 0 EA{I|L}{I|L} 4.0224 - 245 NaN NaN 209089 NaN 11042 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14307 63.572 NaN 464980 35 0 52780 0.261 -1 DMGHPGSRKF 10 90 574.2688858494805 1146.523218765761 2 574.2685546875 MULTI HCD FTMS 0 0 0 14302 90774.3203125 0.15588121953174966 27 -0.7913932800292969 5 Oxidation (M) _DM(Oxidation (M))GHPGSRKF_ ENSG00000181143|ENST00000397910|MUC16 17.11289562659939 0.35104376501799556 2 YT{M(Oxidation (M))|F} 3 -1 27.237 0 0 2.3756 0 0 717.3336330171413 0 717.3336330171413 0 8.126787102754701 0 0 0 0.3807196863200844 0 0.3252574989159953 0 YT{M(Oxidation (M))|F} 2.3756 - 413 + NaN NaN 159896 NaN 11043 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14308 63.575 NaN 122010 35 0 8016.4 0.261 + 25943 SPDAKIFCL 9 57 497.2575770540871 992.5006011749742 2 497.25762939453125 MULTI HCD FTMS 0 0 0 14302 32837.55859375 0.1425249087536356 16 -0.4769706726074219 6 Unmodified _SPDAKIFCL_ ENSG00000083750|ENST00000374941|RRAGB;ENSG00000155876|ENST00000380527|RRAGA;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;nc|ENSG00000083750|Q5VZM2|RRAGB 33.4449034751529 0.0954363425218424 2 SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 9 0 + 46.731 0 0 4.7084 4.7084 87.677 0 0 0 25.76151861349551 10.202264589233394 10.202264589233394 11.020599913279618 0 1.7856668758921828 0 0 0 + + SPDA[K{I|L}]{M(Oxidation (M))|F}C{I|L};SPDA[K{I|L}]C{M(Oxidation (M))|F}{I|L};[PS]DA[K{I|L}]{M(Oxidation (M))|F}C{I|L} 4.7084;3.598;2.699 +;-;+ + 85 + NaN NaN 106128.4 NaN 11044 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14309 63.579 NaN 242950 35 0 25442 0.261 + 51 AATTVEEIL 9 52 473.75816585406665 945.5017787749333 2 473.7581787109375 MULTI HCD FTMS 0 0 0 14302 48936.45703125 0.12196280063088667 -5 0.134033203125 7 Unmodified _AATTVEEIL_ ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 64.23631603340823 0.01165516075559909 2 EE{I|L}{I|L} 4 5 58.928 0 0 6.2324 0 0 443.2378589119477 0 443.2378589119477 0 42.26735336894585 0 0 0 1.5 0 1.1989700043360187 0 + EE{I|L}{I|L} 6.2324 + + 148 NaN NaN 139605 NaN 11045 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14310 63.582 NaN 115660 35 0 3744.3 0.261 -1 0 28 622.5875082638079 NaN 0 622.4215087890625 PEAK HCD FTMS 0 0 0 14302 16268.3369140625 0.7271927365485876 -1 0.01953125 8 NaN NaN 2 G 1 -1 0.3786 0 0 0.030455 0 0 582.4440462133595 600.6660860650999 1183.1101322784593 0 0 0 0 0 0 0 0 0 G 0.030455 - 1 + NaN NaN 118966.3 NaN 11046 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14311 63.585 NaN 188900 35 0 12041 0.261 -1 MPEQWARLL 9 54 580.300013636078 1158.585474338956 2 580.30126953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _M(Oxidation (M))PEQWARLL_ ENSG00000149269|ENST00000356341|PAK1;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;nc|ENSG00000149269|Q13153-2|PAK1;PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant 6.2057823575117 0.30397260197431997 2 A 1 -1 4.6041 0 0 0.39739 0 0 687.2685625731341 397.25669275455317 1084.5252553276873 0 0 0 0 0 0 0 0 0 A 0.39739 + + 5 + NaN NaN 123557.8 NaN 11047 3262 14302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14313 63.59 NaN 3323000 35 0 597720 0.327 + 29094 TYGEIFEKF 9 125 567.2792195549672 1132.5438861767343 2 567.279541015625 MULTI HCD FTMS 0 0 0 14312 2605750.25 0.12393208907414427 25 -0.7290763854980469 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 125.0377797344192 0.0009059125702818869 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 105.01 0 0 9.2722 9.2722 97.476 0 0 0 30.472287753157516 16.478174818886373 16.478174818886373 32.74735947860492 0 2.5994850021680094 2 0.6694451763165201 0.2302046884880938 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};[YT][TP]T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[CA]|SS}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};[YT][TP]TE{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9.2722;6.3807;6.2551;6.1728;5.6103;5.5278;5.4336;4.9836;4.9645;4.8755 +;-;-;-;-;-;-;-;-;- + 7278 + NaN NaN 605898.2 NaN 11048 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14314 63.595 NaN 10940000 35 0 2920800 0.261 + 24699 RYLTVAAVF 9 107 520.3003137195551 1038.5860745059101 2 520.3008422851562 MULTI HCD FTMS 0 0 0 14312 5024920.5 0.13404194584288937 -4 0.11125564575195312 2 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 78.7280429016045 0.006263961847259105 2 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 87.137 0 0 8.39 8.39 93.603 0 0 0 9.77571628814512 67.34799043617195 9.77571628814512 10.079689296712743 0 2.594187677400525 0.8860566476931632 1.5044321917401078 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[VP][HV]TVAAV{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}HVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAA{M(Oxidation (M))|F}V;[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVAVA{M(Oxidation (M))|F};[VP][HV]TVAG{I|L}{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}HVAG{I|L}{M(Oxidation (M))|F};[VP][HV]TVAA{M(Oxidation (M))|F}V;[VP][HV]TVAVA{M(Oxidation (M))|F} 8.39;7.4195;7.3003;7.1839;7.0445;6.8266;6.0739;5.9548;5.9494;5.8561 -;-;-;-;-;-;-;-;-;- 1790 NaN NaN 1771099.2 NaN 11049 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14315 63.598 NaN 508470 35 0 63062 0.261 + 29470 TYVENLRLL 9 65 560.8217480351958 1119.6289431371915 2 560.8213500976562 MULTI HCD FTMS 0 0 0 14312 164544.90625 0.13313190155135224 17 -0.4998207092285156 3 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 67.83816525789305 0.009787749748478139 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 83.54 0 0 7.4614 7.4614 93.79 0 0 0 8.851518780601921 8.851518780601921 8.851518780601921 18.05970632012567 0 2.579689690656103 2 0 1.1421590589602533 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};[YV]TEN{I|L}R{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YT]N{I|L}R{I|L}{I|L} 7.4614;5.8484;4.6908;3.3761 +;-;-;- + 256 NaN NaN 176246.5 NaN 11050 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14316 63.602 NaN 240570 35 0 17292 0.261 + -1 YYLAVFYCV 9 64 599.2883058301587 1196.5620587271173 2 599.8102416992188 MULTI HCD FTMS 0 0 0 14312 28835.90234375 0.6035303050333524 8 -0.23785781860351562 4 Carbamidomethyl (C) _YYLAVFYC(Carbamidomethyl (C))V_ REV__ENSG00000072041|ENST00000266682|SLC6A15;REV__nc|ENSG00000072041|Q9H2J7-2|SLC6A15;REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 5.230669730166228 0.3113646817964458 2 YY{I|L}[YR]{I|L} 6 -1 26.655 0 0 2.2277 0 0 0 322.0641502289746 322.0641502289746 13.723637474483468 0 0 0 0 0 2 0 0 YY{I|L}[YR]{I|L} 2.2277 - 183 NaN NaN 124310.3 NaN 11051 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14317 63.605 NaN 189430 35 0 21044 0.261 -1 ECFLDKHHE 9 47 607.7666793565093 1213.5188057798184 2 607.766845703125 MULTI HCD FTMS 0 0 0 14312 61086.64453125 0.2354669431004738 11 -0.3262176513671875 5 Carbamidomethyl (C) _EC(Carbamidomethyl (C))FLDKHHE_ ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B 14.838274106304384 0.23215694253501695 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.14 0 0 947.3919544904312 0 947.3919544904312 0 18.979400086720375 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.14 - 13 NaN NaN 120137.9 NaN 11052 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14318 63.608 NaN 311820 35 0 34940 0.263 + 52 AATTVEEIL 9 56 473.75816585406665 945.5017787749333 2 473.7579345703125 MULTI HCD FTMS 0 0 0 14312 62556.078125 0.15590655612312648 -4 0.11125564575195312 6 Unmodified _AATTVEEIL_ ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 92.8221339359638 0.0044520161739443126 2 {[QD]|[EN]|[WG]|[KD]|[RS]}TVEE{I|L}{I|L} 8 3 + 67.37 0 0 7.1253 7.1253 95.506 0 0 0 7.689549981487076 37.148867983026506 7.689549981487076 67.37002527416834 0 1.774227503252014 0 2.024227503252014 0 {[QD]|[EN]|[WG]|[KD]|[RS]}TVEE{I|L}{I|L} 7.1253 - 137 NaN NaN 145719.9 NaN 11053 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14319 63.612 NaN 709810 35 0 182810 0.261 -1 ELAQVLPQM 9 96 522.7729075066111 1043.531262080022 2 522.7740478515625 MULTI HCD FTMS 0 0 0 14312 50342.984375 0.4725588652372008 -5 0.1407623291015625 7 Oxidation (M) _ELAQVLPQM(Oxidation (M))_ ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000543049.1_1_16:57114926-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;nc|ENSG00000140853|Q86WI3-4|NLRC5 24.020572477871973 0.15282392193088168 2 {I|L}Q{M(Oxidation (M))|F} 3 -1 42.039 0 0 4.0285 0 0 637.342635030957 0 637.342635030957 0 26.008337601396857 0 0 0 1.4247425010840047 0 0 0.6109243748081782 {I|L}Q{M(Oxidation (M))|F} 4.0285 - 522 + NaN NaN 198670.7 NaN 11054 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14320 63.615 NaN 122390 35 0 7018.2 0.261 + 9879 IAKDPRYEKRW 11 58 487.9357415360435 NaN 0 488.28497314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _IAKDPRYEKRW_ ENSG00000172554|ENST00000308624|SNTG2;nc|ENSG00000172554|Q9NY99-2|SNTG2 1.4551175022131473 0.3379923941668102 2 S 1 11 6.9897 0 0 0.71773 0 0 129.48243170314328 754.3073824518186 883.789814154962 0 0 0 0 0 0 0 0 0 S 0.71773 - 10 + NaN NaN 115980.1 NaN 11055 3263 14312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14322 63.62 NaN 935760 35 0 459090 0.327 -1 0 66 427.30263388320066 852.5907148332013 2 427.3026123046875 MULTI HCD FTMS 0 0 0 14321 540133.125 0.3648889554309328 5 -0.15292739868164062 1 NaN NaN 2 {I|L}[KS] 3 -1 8.072 0 0 0.94676 0 0 506.36851699043126 0 506.36851699043126 0 2.5874185669681555 0 0 0 0 0 0 0 {I|L}[KS] 0.94676 - 13 NaN NaN 237080.2 NaN 11056 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14323 63.624 NaN 976850 35 0 97129 0.261 + 1288 AYMPHTFFI 9 95 571.770448645615 1141.52634435803 2 571.7706298828125 MULTI HCD FTMS 0 0 0 14321 436252.875 0.47827462128505377 5 -0.15292739868164062 2 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 104.79918948944588 0.003791450360204016 2 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 2 + 98.732 0 0 8.6491 8.6491 96.973 0 0 0 70.0181561697859 14.09256854528806 14.09256854528806 35.47782449510585 0 2.341129063296272 2 0.6549471895720984 0 AY{M(Oxidation (M))|F}PHT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}{[QS]|[NT]}P{M(Oxidation (M))|F}C{I|L};[QP]{I|L}STHP{M(Oxidation (M))|F}C{I|L};[Q{I|L}]PSTHP{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]A{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}S{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AY{I|L} 8.6491;5.5412;5.2378;4.8647;4.6818;4.1119;4.0001;3.9577;3.4303;3.3404 -;-;-;-;-;-;-;-;-;- 883 + NaN NaN 234805.1 NaN 11057 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14324 63.628 NaN 983080 35 0 95864 0.261 + 13267 KYMDINFDF 9 93 604.7680784656989 1207.5216039981976 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14321 426908 0.18475778963021436 12 -0.3523979187011719 3 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 93.93812099017352 0.0044227730261779084 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 76.269 0 0 6.3162 6.3162 86.212 0 0 0 3.2568864632742844 31.733689234481503 3.2568864632742844 4.164317917986224 0 2.274227503252014 0 0.5387254899964358 1.1307196863200843 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.3162;5.9713;5.7655;5.5536;5.4206;5.3536;5.2088;5.1629;5.0171;5.0029 +;-;-;-;-;-;-;-;-;- + 3191 NaN NaN 235123.3 NaN 11058 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14325 63.631 NaN 1155800 35 0 159770 0.261 + 14037 KYVDLTVSF 9 81 536.289174487174 1070.563796041148 2 536.2896118164062 MULTI HCD FTMS 0 0 0 14321 302818.9375 0.6931171426041395 -3 0.08179855346679688 4 Unmodified _KYVDLTVSF_ ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 121.5340881639634 0.001118397630175091 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTA{I|L}TVS{M(Oxidation (M))|F} 10 3 + 89.624 0 0 8.3717 8.3717 88.442 0 0 0 1.1282680697468948 10.33039409199364 1.1282680697468948 1.1282680697468948 0 2.274227503252014 1.5228787452803376 1.3851518780601921 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTA{I|L}TVS{M(Oxidation (M))|F};[YK]VD{I|L}TVS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}TA{I|L}TVS{M(Oxidation (M))|F};[VS]T{M(Oxidation (M))|F}A{I|L}TVS{M(Oxidation (M))|F};[VS]{[QN]|[E{I|L}]|[KN]}[YK]VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VT{NN|[MP]|[D{I|L}]|[EV]}[YV]K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RK][YQ]DK 8.3717;8.2663;6.8587;6.7682;3.4756;1.5303;0.33222;0.28948 -;+;-;-;-;-;-;- + 1122 NaN NaN 266081.6 NaN 11059 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14326 63.634 NaN 1887800 35 0 380760 0.262 + 14663 LGPLPHAAV 9 95 437.7608244829045 873.5070960326091 2 437.7608337402344 MULTI HCD FTMS 0 0 0 14321 171439.046875 0.22238203055905267 -3 0.08179855346679688 5 Unmodified _LGPLPHAAV_ ENSG00000144488|ENST00000343063|ESPNL;ENST00000477241.1_1_2:239037864-239040370:+|nuORF;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;nc|ENSG00000144488|Q6ZVH7-3|ESPNL 45.7499826716795 0.03894913563566938 2 {I|L}YTVAR 6 7 66.86 0 0 7.6541 0 0 0 167.0825594537719 167.0825594537719 7.887751293247916 0 0 0 0 1.5501648626366045 1.6989700043360187 0.6989700043360187 0 {I|L}YTVAR 7.6541 - 1788 + NaN NaN 373391.8 NaN 11060 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14327 63.638 NaN 309040 35 0 28776 0.261 + 6624 FPLSESQTL 9 76 511.2639001139767 NaN 0 511.2641906738281 PEAK HCD FTMS 0 0 0 14321 90872.6953125 0.8662744302175981 6 -0.1856231689453125 6 Unmodified _FPLSESQTL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 32.78568957990786 0.10157793141031472 2 T[SG]AQ 5 7 13.442 0 0 1.3172 0 0 131.09638490757828 442.21091638736567 573.307301294944 0 0 0 0 0 0.75 0 0 0 T[SG]AQ 1.3172 - 229 + NaN NaN 132149.3 NaN 11061 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14328 63.641 NaN 176640 35 0 24472 0.261 + 8507 HAFSVEPLL 9 53 506.77662931562105 1011.5387056980421 2 506.7769775390625 MULTI HCD FTMS 0 0 0 14321 48716.765625 0.36669361900063097 3 -0.08840560913085938 7 Unmodified _HAFSVEPLL_ ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF 14.838274106304384 0.23215694253501695 2 EP{I|L}{I|L} 4 5 40.191 0 0 3.9732 0 0 541.2662220685562 0 541.2662220685562 0 34.672436260072814 0 0 0 0.8252574989159953 0 0 0 + EP{I|L}{I|L} 3.9732 + + 33 NaN NaN 110481.8 NaN 11062 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14329 63.644 NaN 464630 35 0 69607 0.261 + -1 GLLLQLLQM 9 77 522.8079239480123 NaN 0 522.8257446289062 PEAK HCD FTMS 0 0 0 14321 9228.5234375 0.28033700692173735 -3 0.08179855346679688 8 Oxidation (M) _GLLLQLLQM(Oxidation (M))_ REV__ENSG00000113555|ENST00000231484|PCDH12;REV__PCDH12|p.L588Rfs*12|1|0.28|ENSG00000113555|chr5:141956078-141956091|TGGGCACCAGCAGG/-|frameshift_variant 7.910154910731844 0.25691533546754686 2 {I|L}Q 2 -1 13.271 0 0 1.2717 0 0 637.4128011657527 162.0225008600219 799.4353020257746 0 0 0 0 0 0 0 0 0.3807196863200844 {I|L}Q 1.2717 + + 76 + NaN NaN 162250.9 NaN 11063 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14330 63.648 NaN 137560 35 0 5246.3 0.261 -1 MAEPPRMMDF 10 46 620.7617797851562 NaN 0 620.7617797851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _M(Oxidation (M))AEPPRMMDF_ ENST00000316286.13_1_7:148771603-148787732:-|nuORF 15.248480904072842 0.31912431859025153 2 D{M(Oxidation (M))|F}NV 4 -1 25.918 0 0 2.091 0 0 165.0752768866633 596.1951998346311 761.2704767212945 0 0 0 0 0 1.3494850021680094 0 0 0 D{M(Oxidation (M))|F}NV 2.091 - 54 + NaN NaN 121701.8 NaN 11064 3264 14321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14332 63.653 NaN 1601000 35 0 279620 0.327 + 3819 EPEQFVVVM 9 108 547.2663734008929 NaN 0 547.2662963867188 PEAK HCD FTMS 0 0 0 14331 169729.828125 0.6119292042656714 -3 0.09510040283203125 1 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 61.357469665136826 0.022835916367010354 2 VQ[HT]V{I|L} 6 7 35.182 0 0 3.2203 0 0 165.04815869437851 247.07227502994377 412.1204337243223 0 0 0 0 0 1.9247425010840047 0 0.805462187404089 0 VQ[HT]V{I|L} 3.2203 - 669 + NaN NaN 333991.8 NaN 11065 3265 14331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14333 63.657 NaN 718860 35 0 50255 0.261 + 6740 FPQEVKDLL 9 87 544.8030623285159 1087.5915717238317 2 544.8031616210938 MULTI HCD FTMS 0 0 0 14331 102403.3359375 0.11741583048355057 7 -0.20824432373046875 2 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 69.33821966488729 0.009302356455414924 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L} 9 0 + 60.301 0 0 5.5444 5.5444 84.989 0 0 0 4.367311381770058 4.367311381770058 4.367311381770058 4.367311381770058 0 2.1237125054200234 2 0.2742275032520141 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}QPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QEVK[{I|L}V]E;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V]QPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]EVKD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}[AG]PE;{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F}[{I|L}V][AG]PE;{NN|[MP]|[D{I|L}]|[EV]}[QP]{M(Oxidation (M))|F}KD{I|L}{I|L};{[TV]|[{I|L}S]}[VG]{I|L}V{M(Oxidation (M))|F}QPE;{NN|[MP]|[D{I|L}]|[EV]}K{I|L}V{M(Oxidation (M))|F}E[QP] 5.5444;5.1429;4.8572;4.7904;4.6978;4.2962;3.9437;3.2433;3.1728;3.0918 +;-;-;-;-;-;-;-;-;- + 576 NaN NaN 195444.3 NaN 11066 3265 14331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14334 63.661 NaN 363540 35 0 30951 0.261 + 27112 SYMGHFDLL 9 73 549.7498597197784 1097.4851665063568 2 549.7501220703125 MULTI HCD FTMS 0 0 0 14331 119712.6796875 0.014218218543474636 122 -3.2188453674316406 3 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 71.13359017698441 0.008721403657255008 2 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 35.463 0 0 3.2313 0 0 591.211717674025 0 591.211717674025 0 17.505857418055225 0 0 0 0.6747425010840047 0 0.7614393726401688 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.2313 + + 178 NaN NaN 146945.3 NaN 11067 3265 14331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14335 63.664 NaN 354820 35 0 33123 0.261 + 32393 VYWKIYNSI 9 73 593.3188197240393 1184.6230865148784 2 593.3189086914062 MULTI HCD FTMS 0 0 0 14331 90421.8046875 0.2283161977034379 6 -0.17554092407226562 4 Unmodified _VYWKIYNSI_ ENSG00000115524|ENST00000335508|SF3B1 45.69961567697781 0.039180348357221985 2 [YV]WK 4 5 39.922 0 0 3.37 0 0 0 605.2932222955686 605.2932222955686 21.861818737241734 0 0 0 0 0.4247425010840047 2 0 0.4247425010840047 + [YV]WK 3.37 + + 79 + NaN NaN 144941.3 NaN 11068 3265 14331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14336 63.667 NaN 278400 35 0 18019 0.261 + -1 MTIGNEFVYL 10 68 601.7906680704655 1201.5667832077309 2 601.7919921875 MULTI HCD FTMS 0 0 0 14331 73379.8203125 0.30927708398790815 -2 0.06231689453125 5 Oxidation (M) _M(Oxidation (M))TIGNEFVYL_ REV__ENSG00000168140|ENST00000304735|VASN;REV__VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant 11.494710602746466 0.4035943721457025 2 E{I|L}{M(Oxidation (M))|F}EQ{I|L} 6 -1 27.924 0 0 2.324 0 0 424.1891346662125 0 424.1891346662125 0 5.533504132662586 0 0 0 0 0 0 0 E{I|L}{M(Oxidation (M))|F}EQ{I|L} 2.324 - 150 NaN NaN 140678.3 NaN 11069 3265 14331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14338 63.672 NaN 639090 35 0 52727 0.327 + 6729 FPQDRVFML 9 87 584.7945927180004 NaN 0 584.7949829101562 PEAK HCD FTMS 0 0 0 14337 266753.03125 0.48434218272883545 7 -0.21826553344726562 1 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 71.70789743142352 0.005701989299776285 2 PQDRV{M(Oxidation (M))|F} 6 3 53.703 0 0 4.5995 0 0 147.0679448930493 275.1070650690063 422.1750099620556 0 0 0 0 0 2.5924778212679485 0 0.3252574989159953 0.6109243748081782 + PQDRV{M(Oxidation (M))|F} 4.5995 + + 319 + NaN NaN 197826.8 NaN 11070 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14339 63.676 NaN 519600 35 0 55156 0.261 + 11719 KCKKCDESF 9 76 544.2491153887769 1086.4836778443537 2 544.2493896484375 MULTI HCD FTMS 0 0 0 14337 88010.046875 0.31561763612566646 7 -0.21826553344726562 2 Unmodified _KCKKCDESF_ ENSG00000160352|ENST00000456283|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714 7.910154910731844 0.2910521888787154 2 PQE[WR]{I|L}{I|L} 7 9 14.996 0 0 1.3803 0 0 145.95793429142242 0 145.95793429142242 0 0.39213524682736534 0 0 0 0.3054621874040891 0 0.3252574989159953 0.5 PQE[WR]{I|L}{I|L} 1.3803 - 102 + NaN NaN 165721.8 NaN 11071 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14340 63.68 NaN 465810 35 0 62157 0.261 + 10209 IGMEKFFNI 9 87 557.7833947445503 1113.5522365559004 2 558.2976684570312 MULTI HCD FTMS 0 0 0 14337 17781.20703125 0.1531573401404623 -1 0.01952362060546875 3 Oxidation (M) _IGM(Oxidation (M))EKFFNI_ ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;RNF216-MTHFD1L|1|fusion;RNF216-MTHFD1L|2|fusion 47.7319792270244 0.034743597693959835 2 DQK[C(Carbamidomethyl (C))M]VG{M(Oxidation (M))|F} 8 8 42.522 0 0 3.8186 0 0 130.11328499515668 0 130.11328499515668 0 25.68955601541468 0 0 0 0.4247425010840047 0 0.4247425010840047 0.23965182871044374 DQK[C(Carbamidomethyl (C))M]VG{M(Oxidation (M))|F} 3.8186 - 911 + NaN NaN 160219.8 NaN 11072 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14341 63.683 NaN 438830 35 0 52155 0.262 + 21474 PYCPRALN 8 75 467.23355508985406 932.4525572465081 2 467.23394775390625 MULTI HCD FTMS 0 0 0 14337 108504.796875 0.2762406032026104 7 -0.21826553344726562 4 Unmodified _PYCPRALN_ ENST00000528173.5_1_11:46400622-46401494:+|nuORF 5.230669730166228 0.5342319408533849 2 {I|L}{I|L} 2 7 7.9588 0 0 0.85353 0 0 59.049108910082005 644.2246717444519 703.273780654534 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.85353 - 61 + NaN NaN 173075.8 NaN 11073 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14342 63.687 NaN 454410 35 0 32440 0.261 + 25409 SEPDFVAKFY 10 90 601.7906680704655 1201.5667832077309 2 601.7899169921875 MULTI HCD FTMS 0 0 0 14337 67103.21875 0.2828228214898945 -1 0.01952362060546875 5 Unmodified _SEPDFVAKFY_ ENSG00000179933|ENST00000319074|C14orf119 18.373094154950223 0.33925629317698053 2 {M(Oxidation (M))|F}Y{I|L} 3 9 29.737 0 0 2.4749 0 0 760.3390370099625 0 760.3390370099625 0 1.7237685389537205 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}Y{I|L} 2.4749 - 562 NaN NaN 166868.1 NaN 11074 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14343 63.69 NaN 323030 35 0 24384 0.261 + 11461 IYQFIMDRF 9 60 624.8076996108747 1247.6008462885493 2 624.808349609375 MULTI HCD FTMS 0 0 0 14337 115228.1796875 0.41460641643969376 -1 0.01952362060546875 6 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 61.08992128646608 0.016056751534446034 2 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 90.2 0 0 7.2299 7.2299 90.69 0 0 0 4.655593552960937 4.655593552960937 4.655593552960937 9.208187539523749 0 2.9291746928241125 2 0.4247425010840047 0.3807196863200844 + + [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[Y{I|L}]MDR{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[YV]AA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG][Y{I|L}]MDR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[YV]{[CA]|SS}{M(Oxidation (M))|F}{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[YV]AA[Y{I|L}]MDR{M(Oxidation (M))|F} 7.2299;6.4918;5.0813;4.6116;4.5406;4.3432;4.2214;4.1203;2.5913;2.392 +;-;-;-;-;-;-;-;-;- + 414 + NaN NaN 134586.7 NaN 11075 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14344 63.693 NaN 379230 35 0 44492 0.261 + 12872 KYFNQIVGF 9 76 558.297755300629 1114.5809576680579 2 558.7996215820312 MULTI HCD FTMS 0 0 0 14337 91552.3828125 0.5823533112531442 -1 0.01952362060546875 7 Unmodified _KYFNQIVGF_ ENSG00000144036|ENST00000272427|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 39.957323273324995 0.06554068735427583 2 {I|L}VG{M(Oxidation (M))|F} 4 5 48.175 0 0 4.3223 0 0 680.3294450721579 0 680.3294450721579 0 34.195925227640984 0 0 0 1.9247425010840047 0 0 0 + {I|L}VG{M(Oxidation (M))|F} 4.3223 + + 270 + NaN NaN 159162.2 NaN 11076 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14345 63.697 NaN 285620 35 0 23601 0.261 + 35054 YTLLRELL 8 77 510.80785155120896 1019.6011501692179 2 510.80804443359375 MULTI HCD FTMS 0 0 0 14337 31906.90625 0.20916297301535616 6 -0.188720703125 8 Unmodified _YTLLRELL_ REV__ENSG00000155363|ENST00000369645|MOV10;REV__ENST00000468624.5_1_1:113217534-113241292:+|nuORF;REV__ENST00000488160.5_1_1:113239361-113241636:+|nuORF;REV__ENST00000496577.5_1_1:113231344-113241292:+|nuORF;REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 12.531546534597751 0.5015908124873912 2 AQYQQA{M(Oxidation (M))|F} 7 -1 23.128 0 0 2.2684 0 0 165.1863547965341 0 165.1863547965341 0 -0.8555745555580785 -0.8555745555580785 0 0 0 0 0 0 AQYQQA{M(Oxidation (M))|F} 2.2684 - 353 + NaN NaN 141171.9 NaN 11077 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14346 63.7 NaN 149190 35 0 7343.9 0.261 + 34145 YPAHFGQLECL 11 51 639.3027957490727 1276.5910385649454 2 639.303466796875 MULTI HCD FTMS 0 0 0 14337 44231.171875 0.3814487667505663 8 -0.24437713623046875 9 Unmodified _YPAHFGQLECL_ ENSG00000166747|ENST00000299980|AP1G1;ENST00000566161.5_1_16:71808369-71823382:-|nuORF;nc|ENSG00000166747|O43747-2|AP1G1 4.189502756095605 0.4005469306127019 2 {I|L}EC{I|L} 4 7 31.938 0 0 2.5018 0 0 800.3634510724625 0 800.3634510724625 0 22.976102833988286 0 0 0 0 0 0 0 + {I|L}EC{I|L} 2.5018 + + 39 NaN NaN 108239 NaN 11078 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14347 63.703 NaN 295310 35 0 30233 0.264 -1 VSKRFMMVWIF 11 71 487.25778234282194 1458.7515176286659 3 487.592041015625 MULTI HCD FTMS 0 0 0 14337 13323.478515625 0.3078646688560482 -1 0.01952362060546875 10 Oxidation (M) _VSKRFM(Oxidation (M))MVWIF_ ENST00000460469.1_1_3:160952958-160956540:+|nuORF 4.715918219556657 0.3982382512160552 2 E[SG]{M(Oxidation (M))|F} 4 -1 35.688 0 0 2.4464 0 0 1020.5773976108909 0 1020.5773976108909 0 24.71848749616356 0 0 0 1.5 0 0.5994850021680094 0 E[SG]{M(Oxidation (M))|F} 2.4464 - 82 + NaN NaN 130866.1 NaN 11079 3266 14337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14349 63.708 NaN 798750 35 0 77883 0.327 + 30633 VPDHVVWSL 9 84 526.2817979800001 1050.5490430268 2 526.2818603515625 MULTI HCD FTMS 0 0 0 14348 335543.28125 0.1030729932982782 21 -0.6111869812011719 1 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 96.28474662873226 0.004361282420133734 2 VE[YR]VWS{I|L} 8 4 + 73.751 0 0 7.0202 7.0202 87.485 0 0 0 4.273174902439578 11.847105889690965 4.273174902439578 4.273174902439578 0 1.774227503252014 1.5228787452803376 1.792674056792244 0 VE[YR]VWS{I|L};{I|L}D[YR]VWS{I|L};{[RE]|[WV]}YVVWS{I|L};{[RE]|[WV]}YVVWTV;{[RE]|[WV]}YVWVS{I|L};{[RE]|[WV]}YVWSV{I|L};V[HV][DP]VWS{I|L};{[RE]|[WV]}YVWVTV;{[RE]|[WV]}YVWS{I|L}V;V{M(Oxidation (M))|F}{[SA]|[TG]}{[QN]|[E{I|L}]|[KN]}WS{I|L} 7.0202;6.6135;5.8925;5.1137;5.107;4.6193;4.3794;4.3281;3.8405;3.6893 -;-;-;-;-;-;-;-;-;- 2316 + NaN NaN 210771 NaN 11080 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14350 63.712 NaN 527360 35 0 72958 0.261 -1 IGMEKFFNI 9 102 557.7833947445503 1113.5522365559004 2 558.2979736328125 MULTI HCD FTMS 0 0 0 14348 116097.6484375 1 0 0 2 Oxidation (M) _IGM(Oxidation (M))EKFFNI_ ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;RNF216-MTHFD1L|1|fusion;RNF216-MTHFD1L|2|fusion 35.61225514009592 0.08548698421724198 2 {I|L}YPK[C(Carbamidomethyl (C))M]VG 8 -1 37.841 0 0 3.3982 0 0 0 162.05608545474846 162.05608545474846 19.74423738776309 0 0 0 0 0.2742275032520141 1.2218487496163564 0 0.3494850021680094 {I|L}YPK[C(Carbamidomethyl (C))M]VG 3.3982 - 2821 + NaN NaN 166212.4 NaN 11081 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14351 63.716 NaN 284270 35 0 26241 0.261 + 29471 TYVENLRLL 9 58 560.8217480351958 1119.6289431371915 2 561.3236694335938 MULTI HCD FTMS 0 0 0 14348 123928.640625 0.15920301352784413 21 -0.6111869812011719 3 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 51.41523569358685 0.02959097413485123 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 74.944 0 0 6.6936 6.6936 89.713 0 0 0 4.911356165197844 4.911356165197844 4.911356165197844 9.208187539523749 0 2.385151878060192 2 0 0 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}R{I|L}{I|L} 6.6936;5.8712;3.5362 +;-;- + 244 + NaN NaN 139837 NaN 11082 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14352 63.719 NaN 246200 35 0 20100 0.261 + 6901 FPVEHVQLL 9 65 541.3056151428198 1080.5966773524394 2 541.3054809570312 MULTI HCD FTMS 0 0 0 14348 92094.6953125 0.19694350098464056 8 -0.2344818115234375 4 Unmodified _FPVEHVQLL_ ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF 34.40172386719151 0.0910440009062557 2 VQ{I|L}{I|L} 4 5 37.295 0 0 3.4513 0 0 609.2933216779312 0 609.2933216779312 0 14.59183145787911 0 0 0 0.9247425010840047 0 0 0 + VQ{I|L}{I|L} 3.4513 + + 148 NaN NaN 146872.5 NaN 11083 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14353 63.723 NaN 408850 35 0 34661 0.261 + 20032 NYIGLINRI 9 81 538.3163769983624 1074.6182010635248 2 538.315673828125 MULTI HCD FTMS 0 0 0 14348 96352.75 0.01891680201888642 50 -1.3662681579589844 5 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 53.832793166522166 0.026208976789938845 2 [YN]{I|L}G{I|L}{I|L}[RN]{I|L} 9 0 + 53.891 0 0 5.0149 5.0149 90.728 0 0 0 4.704999916446795 17.995587109089044 4.704999916446795 31.478174818886373 0 2.1307196863200843 1.5228787452803376 0 0.3252574989159953 + + [YN]{I|L}G{I|L}{I|L}[RN]{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]G{I|L}{I|L}[RN]{I|L} 5.0149;2.0857 +;- + 326 NaN NaN 151619.8 NaN 11084 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14354 63.732 NaN 150470 35 0 12509 0.261 + 16833 LYECTGQFDF 10 45 611.7584091654534 NaN 0 611.7568359375 PEAK HCD FTMS 0 0 0 14348 37704.33984375 0.46863608861306344 -2 0.055572509765625 6 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 9.5439744041441 0.33201596970086106 2 D{M(Oxidation (M))|F}N 3 -1 29.693 0 0 2.4308 0 0 165.07742976042488 677.2613009088499 842.3387306692748 0 0 0 0 0 1.3494850021680094 0 0 0 D{M(Oxidation (M))|F}N 2.4308 - 19 + NaN NaN 133036.7 NaN 11085 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14355 63.735 NaN 359280 35 0 16433 0.261 + 32322 VYVDLGGSHVF 11 63 596.8037942801744 1191.5930356271488 2 596.8038940429688 MULTI HCD FTMS 0 0 0 14348 85674.28125 0.065589924790099 20 -0.5850334167480469 7 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 41.95555342248728 0.1243556816384599 2 [YV][EP]GREPV{M(Oxidation (M))|F} 10 6 + 44.09 0 0 3.7001 3.7001 81.544 0 0 0 2.2577249674798594 37.10077508221467 2.2577249674798594 1.9897000433601875 0 1.1237125054200234 1.6989700043360187 0 0 [YV][EP]GREPV{M(Oxidation (M))|F};[YV][EP]GREVP{M(Oxidation (M))|F};[YV]VD[KT][HS]P{M(Oxidation (M))|F};[YV]VE[KS][HS]P{M(Oxidation (M))|F} 3.7001;3.5332;3.3282;3.1767 -;-;-;- 215 NaN NaN 145063.3 NaN 11086 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14356 63.739 NaN 471610 35 0 51786 0.261 -1 SPGSPVILQM 10 85 522.7729075066111 1043.531262080022 2 522.7728881835938 MULTI HCD FTMS 0 0 0 14348 44825.77734375 0.4207700186613723 -1 0.03604888916015625 8 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 22.736283301280096 0.29844449404982915 2 {I|L}Q{M(Oxidation (M))|F} 3 -1 38.302 0 0 3.6704 0 0 637.3426462126378 0 637.3426462126378 0 30.854706403678875 0 0 0 1.4247425010840047 0 0 0.3252574989159953 {I|L}Q{M(Oxidation (M))|F} 3.6704 + + 301 + NaN NaN 164355.9 NaN 11087 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14357 63.742 NaN 155110 35 0 15222 0.261 + 7143 FSEPFHLI 8 48 495.2578258807499 988.5010988282999 2 495.2201843261719 MULTI HCD FTMS 0 0 0 14348 100897.375 1 0 0 9 Unmodified _FSEPFHLI_ ENSG00000132185|ENST00000236938|FCRLA;ENST00000470841.1_1_1:161680536-161681272:+|nuORF;nc|ENSG00000132185|Q7L513-10|FCRLA;nc|ENSG00000132185|Q7L513-12|FCRLA;nc|ENSG00000132185|Q7L513-13|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;nc|ENSG00000132185|Q7L513-3|FCRLA;nc|ENSG00000132185|Q7L513-6|FCRLA;nc|ENSG00000132185|Q7L513-8|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA 26.34127834903884 0.3999841173197873 2 {I|L}{I|L} 2 6 25.217 0 0 2.551 0 0 744.3204212873062 0 744.3204212873062 0 8.182503180159344 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.551 + + 16 NaN NaN 112629 NaN 11088 3267 14348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14359 63.747 NaN 38124000 35 0 11579000 0.326 + 24700 RYLTVAAVF 9 70 520.3003137195551 1038.5860745059101 2 520.3009643554688 MULTI HCD FTMS 0 0 0 14358 21964242 0.5859057345572166 1 -0.02582550048828125 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 60.07390631473393 0.0174780869009295 2 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 82.075 0 0 7.9026 7.9026 93.396 0 0 0 4.762036441594191 58.27037404299105 4.762036441594191 12.213403050078782 0 2.3494850021680094 0 1.1747425010840047 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVAA{M(Oxidation (M))|F}V;[Y{I|L}]RTVQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]V{M(Oxidation (M))|F};[Y{I|L}]R[Q{I|L}]TV{M(Oxidation (M))|F};{[VA]|[{I|L}G]}AVTRY{I|L}{M(Oxidation (M))|F};[Q{I|L}]VTRY{I|L}{M(Oxidation (M))|F};[Y{I|L}]R[Q{I|L}]S{I|L}{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]{M(Oxidation (M))|F}V 7.9026;6.7266;6.4325;5.6214;4.4873;4.1974;3.9055;3.7411;3.0214;3.0172 -;-;-;-;-;-;-;-;-;- 434 NaN NaN 752366.7 NaN 11089 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14360 63.751 NaN 3359700 35 0 561550 0.248 + 29095 TYGEIFEKF 9 118 567.2792195549672 1132.5438861767343 2 567.279541015625 MULTI HCD FTMS 0 0 0 14358 2161113.75 0.10278473225296936 30 -0.8277473449707031 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 136.39213081522345 0.00021731600835925866 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 106.72 0 0 9.4226 9.4226 97.563 0 0 0 31.026909627198407 16.478174818886373 16.478174818886373 32.30713133096572 0 2.5356668758921828 2 0.9035984316004221 0.2302046884880938 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};TY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};[YT][YV][PS]EK{M(Oxidation (M))|F};[YT]G{I|L}E{M(Oxidation (M))|F}E{M(Oxidation (M))|F}K 9.4226;6.57;6.1965;5.9824;5.9667;5.7827;5.6108;5.3013;4.9274;4.7216 +;-;-;-;-;-;-;-;-;- + 8257 + NaN NaN 561895.5 NaN 11090 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14361 63.755 NaN 966510 35 0 308890 0.261 -1 TAMDVVYAL 9 52 499.7467790357058 997.4790051382116 2 499.7469482421875 MULTI HCD FTMS 0 0 0 14358 287927.28125 0.4810215790785463 -13 0.3889884948730469 3 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 44.40701690623563 0.04511410083598184 2 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2149904728867 0 533.2149904728867 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 48 NaN NaN 233148.5 NaN 11091 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14362 63.758 NaN 756480 35 0 124380 0.261 -1 0 55 455.66022554386427 909.3058981545286 2 455.6604309082031 MULTI HCD FTMS 0 0 0 14358 150700.421875 0.4990077096392531 1 -0.02582550048828125 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8684 0 0 744.2269929805036 0 744.2269929805036 0 1.47045646238481 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8684 - 68 + NaN NaN 199176.7 NaN 11092 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14363 63.761 NaN 468370 35 0 50221 0.261 + 19870 NYAYCQVVRE 10 67 622.7904288476404 1243.5663047620808 2 622.788818359375 MULTI HCD FTMS 0 0 0 14358 156381.109375 0.535067927127964 1 -0.02582550048828125 5 Unmodified _NYAYCQVVRE_ ENSG00000187790|ENST00000267430|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM 29.081581746732265 0.240155558137004 2 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L} 9 7 + 82.717 0 0 6.6516 6.6516 92.432 0 0 0 11.099367149974015 72.25924252937565 11.099367149974015 19.055230205182355 0 2.3494850021680094 1.6989700043360187 0.3807196863200844 1.2561420478726844 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L};[YN]A[{M(Oxidation (M))|F}V]V{[DS]|[MA]|[CV]|TT}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[PA]DA{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{I|L};[MT][KA]YV{[DS]|[MA]|[CV]|TT}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[WP][{M(Oxidation (M))|F}V]A[YN];[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[W{I|L}][YN];[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[QV]|[N{I|L}]|[RA]|[KV]}[WY];[YN]A[YK]QQA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[YK]G[QA]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[KG]DA{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{I|L} 6.6516;5.1193;4.5071;3.6394;3.4583;3.4175;3.2759;2.6142;2.3055;1.0176 -;-;-;-;-;-;-;-;-;- 510 NaN NaN 164727.3 NaN 11093 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14364 63.765 NaN 288710 35 0 28090 0.262 -1 0 45 531.2916399380772 530.2843634714771 1 531.2916870117188 MULTI HCD FTMS 0 0 0 14358 96558.5625 0.39758592452404834 1 -0.02582550048828125 6 NaN NaN 2 P 1 -1 1.5938 0 0 0.30055 0 0 96.06748832674903 334.13791834049067 430.2054066672397 0 0 0 0 0 0 0 0 0 P 0.30055 - 3 + NaN NaN 149676.8 NaN 11094 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14365 63.768 NaN 395240 35 0 50854 0.261 + 5213 FFDAELSQM 9 63 552.2394798963711 NaN 0 552.2396850585938 PEAK HCD FTMS 0 0 0 14358 198097.140625 0.8060506166709369 -11 0.32340240478515625 7 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 78.7280429016045 0.0034054849820771994 2 QS{I|L}EAD 6 8 46.732 0 0 4.2389 0 0 165.01635712751914 291.1139010065063 456.13025813402544 0 0 0 0 0 1.4247425010840047 0 0.7614393726401688 0 QS{I|L}EAD 4.2389 - 130 + NaN NaN 152219.4 NaN 11095 3268 14358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14367 63.773 NaN 972330 35 0 511170 0.327 -1 0 59 427.30262838993985 852.5907038466797 2 427.3027038574219 MULTI HCD FTMS 0 0 0 14366 615631.0625 0.22645689898631993 -10 0.2936668395996094 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.382 0 0 687.511127285936 0 687.511127285936 0 5.668408423402498 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.382 - 20 + NaN NaN 251151.6 NaN 11096 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14368 63.777 NaN 3439900 35 0 718990 0.261 + 825 AVPPLHAGL 9 106 437.7608244829045 873.5070960326091 2 437.7608642578125 MULTI HCD FTMS 0 0 0 14366 344309.53125 0.4466208491933475 2 -0.055446624755859375 2 Unmodified _AVPPLHAGL_ ENSG00000128242|ENST00000406361|GAL3ST1 45.7499826716795 0.03894913563566938 2 {I|L}YTVAR 6 8 73.013 0 0 8.3586 0 0 0 167.08266626529533 167.08266626529533 11.567022752910304 0 0 0 0 1.8371804965004639 2 0.6989700043360187 0 {I|L}YTVAR 8.3586 - 2182 + NaN NaN 615926.9 NaN 11097 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14369 63.781 NaN 774910 35 0 70022 0.261 -1 KYMDVQFDF 9 77 604.7680784656989 1207.5216039981976 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14366 287190 0.1242904550954802 17 -0.4876365661621094 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 61.08992128646608 0.016056751534446034 2 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 -1 63.906 0 0 5.2923 0 0 438.19444472480626 0 438.19444472480626 0 42.63805019828801 0 0 0 1.9247425010840047 0 0 1.1549471895720984 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.2923 - 1590 NaN NaN 197136.9 NaN 11098 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14370 63.784 NaN 910650 35 0 76152 0.261 -1 SFTDKQMLR 9 106 571.2878509836182 1140.5611490340364 2 571.7704467773438 MULTI HCD FTMS 0 0 0 14366 40619.7109375 0.847540947263374 1 -0.032695770263671875 4 Oxidation (M) _SFTDKQM(Oxidation (M))LR_ L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense 16.942295170755138 0.21397866736869717 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TD 4 -1 27 0 0 2.3672 0 0 0 687.3613864210082 687.3613864210082 6.651603310239906 0 0 0 0 0 2 0.5484550065040282 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TD 2.3672 + + 2047 NaN NaN 245879.1 NaN 11099 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14371 63.787 NaN 1871900 35 0 157340 0.261 + -1 FSDIVDEKSM 10 114 593.7668546207333 1185.5191563082665 2 593.779541015625 MULTI HCD FTMS 0 0 0 14366 40838.89453125 0.6790791096510589 1 -0.032695770263671875 5 Oxidation (M) _FSDIVDEKSM(Oxidation (M))_ REV__CMYA5|p.N3730S|1|0.25|ENSG00000164309|chr5:79758831-79758831|A/G|missense_variant 19.361941925380144 0.3300069447713393 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F} 9 -1 + 77.445 0 0 6.5326 6.5326 87.865 0 0 0 5.737862141609185 13.339993556128107 5.737862141609185 7.269987279362624 0 0 2 1.1861818737241734 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR{I|L}DS{M(Oxidation (M))|F};AY[WE]RWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]{I|L}DS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[PS]M{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]{[DA]|[EG]}E{M(Oxidation (M))|F};AYDT{I|L}{I|L}{[QS]|[NT]}E{M(Oxidation (M))|F};AY[{M(Oxidation (M))|F}V][VG]VTD{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]};AY[{M(Oxidation (M))|F}V][KP]WE{M(Oxidation (M))|F} 6.5326;5.9194;5.3331;5.1463;4.9941;4.9828;4.6358;4.4379;4.391;4.2942 -;-;-;-;-;-;-;-;-;- 2740 NaN NaN 387231.2 NaN 11100 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14372 63.791 NaN 312370 35 0 34287 0.263 + 53 AATTVEEIL 9 54 473.75816585406665 945.5017787749333 2 473.7584228515625 MULTI HCD FTMS 0 0 0 14366 183538.40625 0.4574270269563005 2 -0.055446624755859375 6 Unmodified _AATTVEEIL_ ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 61.357469665136826 0.01568246967499496 2 EE{I|L}{I|L} 4 5 54.68 0 0 5.7832 0 0 443.2387779378111 0 443.2387779378111 0 25.117712413948894 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + EE{I|L}{I|L} 5.7832 + + 168 NaN NaN 133808.7 NaN 11101 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14373 63.794 NaN 318050 35 0 31608 0.261 + 29472 TYVENLRLL 9 68 560.8217480351958 1119.6289431371915 2 560.8223266601562 MULTI HCD FTMS 0 0 0 14366 106518.5 0.08618322364748203 23 -0.6447792053222656 7 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 67.83816525789305 0.009787749748478139 2 [YT]VEN{I|L}R{I|L}{I|L} 9 0 + 85.16 0 0 7.6061 7.6061 94.516 0 0 0 13.794934551318079 13.794934551318079 13.794934551318079 23.003122090841828 0 2.504432191740108 2 0.7302046884880937 0.7742275032520141 + + [YT]VEN{I|L}R{I|L}{I|L};[YT]VEGG{I|L}R{I|L}{I|L} 7.6061;5.5516 +;- + 250 NaN NaN 143654 NaN 11102 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14374 63.797 NaN 582010 35 0 90491 0.261 -1 ILTNPMDVI 9 73 516.2759101782298 1030.5372674232594 2 516.2762451171875 MULTI HCD FTMS 0 0 0 14366 132968.515625 0.5529820797101355 -9 0.2641716003417969 8 Oxidation (M) _ILTNPM(Oxidation (M))DVI_ ENSG00000160785|ENST00000359511|SLC25A44 19.256988751693697 0.19398022840297344 2 V{I|L} 2 -1 21.638 0 0 2.0997 0 0 800.3730949310894 0 800.3730949310894 0 4.648415687162952 0 0 0 0.3054621874040891 0 0 0 V{I|L} 2.0997 + + 340 NaN NaN 193896.1 NaN 11103 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14375 63.801 NaN 249190 35 0 12506 0.261 + 5488 FIYERQLL 8 66 541.3056151428198 1080.5966773524394 2 541.3078002929688 MULTI HCD FTMS 0 0 0 14366 85659.203125 0.1831812711660299 10 -0.2845726013183594 9 Unmodified _FIYERQLL_ ENST00000467530.5_1_1:85960282-85960465:-|nuORF 24.020572477871973 0.4170589785259073 2 Q{I|L}{I|L} 3 5 27.976 0 0 2.589 0 0 708.3610711886877 0 708.3610711886877 0 6.549471895720984 0 0 0 0.805462187404089 0 0 0 + Q{I|L}{I|L} 2.589 + + 84 NaN NaN 127954.3 NaN 11104 3269 14366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14377 63.805 NaN 1142100 35 0 157840 0.327 + 23452 RLPSETYFF 9 68 580.2926199930132 1158.5706870528263 2 580.7941284179688 MULTI HCD FTMS 0 0 0 14376 336273.9375 0.6420576410965921 -2 0.058521270751953125 1 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 47.748688679222035 0.03472022231463587 2 [R{I|L}][PS]TEY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 68.835 0 0 5.9413 5.9413 93.498 0 0 0 15.162574822053543 51.923487412610356 15.162574822053543 68.83471251333795 0 1.9247425010840047 1.3010299956639813 0.8494850021680094 0 [R{I|L}][PS]TEY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9413 - 91 NaN NaN 262892.5 NaN 11105 3270 14376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14378 63.81 NaN 1134700 35 0 291000 0.261 -1 FPEGPAGTVAM 11 94 546.7560671202675 NaN 0 546.7562255859375 PEAK HCD FTMS 0 0 0 14376 77394.734375 0.14311571653624844 3 -0.08499908447265625 2 Oxidation (M) _FPEGPAGTVAM(Oxidation (M))_ ENST00000310942.8_1_17:77760985-77761486:+|nuORF 13.042465956692817 0.3051224235824938 2 VQTHVVV 7 -1 41.758 0 0 3.8258 0 0 164.02756285205993 162.02303491763908 326.05059776969904 0 0 0 0 0 0 0 0.7302046884880937 0 VQTHVVV 3.8258 - 796 + NaN NaN 264329.1 NaN 11106 3270 14376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14379 63.813 NaN 669250 35 0 46558 0.261 + 3093 EAINVEQAF 9 93 510.7535634563173 NaN 0 510.7533264160156 PEAK HCD FTMS 0 0 0 14376 94794.1015625 0.7575731277066284 1 -0.0227508544921875 3 Unmodified _EAINVEQAF_ ENSG00000075785|ENST00000265062|RAB7A 63.227496030279354 0.019321093200456756 2 NVEQA 5 4 49.399 0 0 4.8454 0 0 313.1669647038471 162.05596338443596 475.2229280882831 0 0 0 0 0 2.6549471895720984 0 0.3252574989159953 0.3054621874040891 + NVEQA 4.8454 + + 747 + NaN NaN 205076.6 NaN 11107 3270 14376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14380 63.817 NaN 427570 35 0 36037 0.261 + 27113 SYMGHFDLL 9 75 549.7498597197784 1097.4851665063568 2 549.74951171875 MULTI HCD FTMS 0 0 0 14376 125414 0.014895361669842564 127 -3.35101318359375 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 64.23631603340823 0.01165516075559909 2 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 31.899 0 0 2.9065 0 0 591.20805556465 0 591.20805556465 0 7.680402257929746 0 0 0 0.3807196863200844 0 0.7614393726401688 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 2.9065 + + 189 NaN NaN 177136.3 NaN 11108 3270 14376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14381 63.82 NaN 249380 35 0 28751 0.261 + 6275 FPFHESIL 8 70 495.2578258807499 988.5010988282999 2 495.2593688964844 MULTI HCD FTMS 0 0 0 14376 80249.4375 0.7953570397644141 3 -0.08499908447265625 5 Unmodified _FPFHESIL_ nc|ENSG00000120802|P42166|TMPO 40.44857923139169 0.22516712537107883 2 {I|L}{I|L} 2 6 25.969 0 0 2.6271 0 0 744.3214426755214 0 744.3214426755214 0 7.429928190999391 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6271 + + 102 NaN NaN 142969 NaN 11109 3270 14376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14382 63.823 NaN 208960 35 0 18639 0.261 + 24299 RYFPTQALNF 10 52 628.8237861212817 1255.6330193093634 2 628.8243408203125 MULTI HCD FTMS 0 0 0 14376 70968.9921875 0.5478700749006521 -4 0.13326644897460938 6 Unmodified _RYFPTQALNF_ ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000169100|ENST00000381401|SLC25A6 15.738622578938676 0.3638982514236938 2 A{I|L}N{M(Oxidation (M))|F} 4 6 39.68 0 0 3.1602 0 0 792.3905867532491 0 792.3905867532491 0 35.70107520596089 0 0 0 0.9247425010840047 0 0 0 + A{I|L}N{M(Oxidation (M))|F} 3.1602 + + 21 NaN NaN 138879 NaN 11110 3270 14376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14384 63.828 NaN 465700 35 0 55046 0.327 + 27827 TAYWKELSL 9 59 555.7948470810376 1109.575141228875 2 555.7952270507812 MULTI HCD FTMS 0 0 0 14383 173484.375 0.3500288112519682 4 -0.11451339721679688 1 Unmodified _TAYWKELSL_ ENSG00000166579|ENST00000334527|NDEL1;ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-2|NDEL1;nc|ENSG00000166579|Q9GZM8-3|NDEL1 43.981846655682396 0.04706587046877104 2 WY[PG] 4 8 30.445 0 0 2.7439 0 0 588.3476068233516 0 588.3476068233516 0 -4.247425010840047 -4.247425010840047 0 0 1.4247425010840047 0 0 0 WY[PG] 2.7439 - 68 NaN NaN 161058.3 NaN 11111 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14385 63.833 NaN 341200 35 0 27332 0.261 + 6730 FPQDRVFML 9 73 584.7945927180004 NaN 0 584.7950439453125 PEAK HCD FTMS 0 0 0 14383 160925.09375 0.2921909108116929 12 -0.347076416015625 2 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENSG00000115760|ENST00000421745|BIRC6 57.24910588100465 0.030557824717750096 2 PQDRV{M(Oxidation (M))|F}A 7 3 44.367 0 0 3.8 0 0 147.0692090061787 204.06467615299064 351.1338851591694 0 0 0 0 0 2.1237125054200234 0 0.2742275032520141 0.28872548999643577 PQDRV{M(Oxidation (M))|F}A 3.8 - 95 + NaN NaN 139232.7 NaN 11112 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14386 63.836 NaN 520930 35 0 60683 0.261 + 27658 TALFVEHVL 9 66 514.7926130132719 1027.5706730933437 2 514.7929077148438 MULTI HCD FTMS 0 0 0 14383 224032.578125 0.478792918715416 -3 0.08127212524414062 3 Unmodified _TALFVEHVL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 103.74828524460852 0.00396301343438984 2 [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L} 9 0 + 99.875 0 0 9.7195 9.7195 94.872 0 0 0 12.188878426313252 12.188878426313252 12.188878426313252 9.771212547196626 0 2.805462187404089 1.3979400086720375 0.6237125054200234 0 + + [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L};[TA]{M(Oxidation (M))|F}{I|L}VEHV{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}[PG]{I|L};[TA]{M(Oxidation (M))|F}{I|L}V[NP][PG]{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[NP][PG]{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}{I|L}[PG];[TA]{M(Oxidation (M))|F}{I|L}V[NP]{I|L}[PG];[TA]{I|L}{M(Oxidation (M))|F}V[NP]{I|L}[PG];[TA]{I|L}[PG]GV{M(Oxidation (M))|F}[PG]{I|L};[TA]{I|L}[PG]GV{M(Oxidation (M))|F}{I|L}[PG] 9.7195;8.7686;6.3017;6.1899;6.1677;6.1081;5.9963;5.974;5.9685;5.7748 +;-;-;-;-;-;-;-;-;- + 436 NaN NaN 170575.3 NaN 11113 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14387 63.839 NaN 282480 35 0 33114 0.261 + 14249 LCHAPWCLEF 10 76 609.7749070771855 1217.535261221171 2 609.774658203125 MULTI HCD FTMS 0 0 0 14383 191631.75 0.9781173881357519 -5 0.15601730346679688 4 Unmodified _LCHAPWCLEF_ REV__ENSG00000101639|ENST00000506447|CEP192;REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF;REV__ENST00000540847.6_1_18:13088862-13124766:+|nuORF;REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 10.823927491677226 0.4098686510432541 2 AY{M(Oxidation (M))|F}VTRW 7 -1 53.65 0 0 4.4064 0 0 0 291.0980623834594 291.0980623834594 29.040491435682803 0 0 0 0 0.9896518287104438 1.6989700043360187 0 0 AY{M(Oxidation (M))|F}VTRW 4.4064 - 187 + NaN NaN 131944.2 NaN 11114 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14388 63.843 NaN 644160 35 0 66842 0.261 -1 TDSRMWIEF 9 98 600.7701682092166 1199.5257834852332 2 601.7908935546875 MULTI HCD FTMS 0 0 0 14383 48263.921875 0.6267199265520819 -4 0.11996841430664062 5 Oxidation (M) _TDSRM(Oxidation (M))WIEF_ ENSG00000038295|ENST00000061240|TLL1 10.823927491677226 0.26684000660059787 2 ESMW{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}Y 9 -1 + 41.951 0 0 3.4973 3.4973 83.901 0 0 0 15.337119661928064 6.935953823714897 6.935953823714897 8.199849938126889 0 0.5629529932484498 1.2218487496163564 0 0 ESMW{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}Y;EYW[PA]E{[QD]|[EN]|[WG]|[KD]|[RS]}Y;EC[PG]{M(Oxidation (M))|F}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}Y;[MT]DW{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}Y;EY{[DA]|[EG]}[HQ]K{M(Oxidation (M))|F}Y;ESMT[HS]AK{M(Oxidation (M))|F}Y;ESMTVV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[{M(Oxidation (M))|F}E];EC[RH]{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}Y;[C(Carbamidomethyl (C))S]D[KG]VE{[QD]|[EN]|[WG]|[KD]|[RS]}Y;[MT][WE]VE{[QD]|[EN]|[WG]|[KD]|[RS]}Y 3.4973;2.8137;2.4038;2.1102;2.1092;1.925;1.8348;1.7694;1.3356;1.1958 -;-;-;-;-;-;-;-;-;- 1143 + NaN NaN 188663.4 NaN 11115 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14389 63.846 NaN 278880 35 0 20832 0.261 + 6741 FPQEVKDLL 9 58 544.8030623285159 1087.5915717238317 2 544.80322265625 MULTI HCD FTMS 0 0 0 14383 45241.140625 0.051873564956414805 13 -0.37982177734375 6 Unmodified _FPQEVKDLL_ ENSG00000198301|ENST00000356260|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF 47.7319792270244 0.034743597693959835 2 VEQPE 5 8 47.92 0 0 4.406 0 0 487.30162245918126 0 487.30162245918126 0 18.99166239860314 0 0 0 1 0 0.5 0.4247425010840047 VEQPE 4.406 - 115 NaN NaN 144657.4 NaN 11116 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14390 63.849 NaN 257070 35 0 28671 0.261 + 6276 FPFHESIL 8 67 495.2578258807499 988.5010988282999 2 495.25787353515625 MULTI HCD FTMS 0 0 0 14383 71727.6171875 0.7108967620564955 4 -0.11451339721679688 7 Unmodified _FPFHESIL_ nc|ENSG00000120802|P42166|TMPO 32.116972079565 0.3321965280364247 2 {I|L}SE{M(Oxidation (M))|F}{I|L}C{M(Oxidation (M))|F} 7 7 41.2 0 0 4.1679 0 0 131.09305731063495 0 131.09305731063495 0 16.101365389778465 0 0 0 0.6861818737241735 0 0.6694451763165201 0 {I|L}SE{M(Oxidation (M))|F}{I|L}C{M(Oxidation (M))|F} 4.1679 - 171 + NaN NaN 131424.5 NaN 11117 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14391 63.853 NaN 365470 35 0 35872 0.261 + 8965 HPDYAEYIF 9 77 577.7609937013439 1153.5074344694876 2 577.7600708007812 MULTI HCD FTMS 0 0 0 14383 57624.25390625 0.7385407303577514 -7 0.2083740234375 8 Unmodified _HPDYAEYIF_ ENSG00000101040|ENST00000471951|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8 11.640296217721598 0.25978676193971967 2 Y{I|L}{M(Oxidation (M))|F} 3 6 31.242 0 0 2.7085 0 0 712.2819691388687 0 712.2819691388687 0 10.273109370204452 0 0 0 0.805462187404089 0 0 0 + Y{I|L}{M(Oxidation (M))|F} 2.7085 + + 78 NaN NaN 160011.4 NaN 11118 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14392 63.856 NaN 332690 35 0 28428 0.261 -1 DFDMTLSRF 9 90 574.257231996262 NaN 0 574.2695922851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _DFDM(Oxidation (M))TLSRF_ ENSG00000122643|ENST00000610140|NT5C3A;ENSG00000141698|ENST00000435506|NT5C3B;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;nc|ENSG00000141698|Q969T7-2|NT5C3B;NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant 13.042465956692817 0.23204487237355156 2 YT 2 -1 8.2011 0 0 0.71531 0 0 717.3099689723884 162.0561922662719 879.3661612386603 0 0 0 0 0 0.3252574989159953 0 0 0 YT 0.71531 - 209 + NaN NaN 154969.3 NaN 11119 3271 14383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14394 63.861 NaN 1480100 35 0 108950 0.327 + 31806 VYMDWYEKF 9 113 648.7838371335808 1295.5531213339616 2 648.7839965820312 MULTI HCD FTMS 0 0 0 14393 516178.84375 0.22933805523843673 16 -0.4585151672363281 1 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 128.93241758739586 0.0006697181619526092 2 VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 121.02 0 0 9.3413 9.3413 96.715 0 0 0 75.91116560242008 18.90597973953868 18.90597973953868 21.656205609827254 0 2.8979400086720375 2 0.9163865622122672 0.8263487002666079 + + VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}DWY[VG]T{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYE{M(Oxidation (M))|F}K;[YV]{M(Oxidation (M))|F}DWEYK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[QT]K{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWEY{M(Oxidation (M))|F}K;[YV]{M(Oxidation (M))|F}DWYT[VG]{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}T[TP]N{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 9.3413;7.6697;7.1223;7.0174;6.7135;6.6063;6.0612;5.9994;5.651;5.6384 +;+;-;-;-;-;-;-;-;- + 5384 + NaN NaN 321159 NaN 11120 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14395 63.865 NaN 1286300 35 0 175610 0.262 + 3820 EPEQFVVVM 9 102 547.2663734008929 NaN 0 547.2666625976562 PEAK HCD FTMS 0 0 0 14393 166206.859375 0.59922779822729 4 -0.11132049560546875 2 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3 52.268347100219714 0.03991945013439704 2 VVVT 4 6 43.008 0 0 3.9366 0 0 165.04795097006325 526.2026461236936 691.2505970937568 0 0 0 0 0 1.8807196863200843 0 1.5044321917401078 0 VVVT 3.9366 - 847 + NaN NaN 298678.3 NaN 11121 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14396 63.869 NaN 270020 35 0 21963 0.261 + 19871 NYAYCQVVRE 10 60 622.7904288476404 1243.5663047620808 2 622.7908935546875 MULTI HCD FTMS 0 0 0 14393 129117.7265625 0.4417845261706319 5 -0.13750457763671875 3 Unmodified _NYAYCQVVRE_ ENSG00000187790|ENST00000267430|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM 29.081581746732265 0.240155558137004 2 [YN]A{[DS]|[MA]|[CV]|TT}VYY 8 4 67.484 0 0 5.4267 0 0 0 265.1306551568969 265.1306551568969 48.02046884880937 0 0 0 0 2.1861818737241734 1.6989700043360187 0.9247425010840047 0 [YN]A{[DS]|[MA]|[CV]|TT}VYY 5.4267 - 313 + NaN NaN 144360.1 NaN 11122 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14397 63.872 NaN 466660 35 0 44759 0.262 + 30634 VPDHVVWSL 9 76 526.2817979800001 1050.5490430268 2 526.2821044921875 MULTI HCD FTMS 0 0 0 14393 274039.53125 0.08418012324004638 26 -0.7137718200683594 4 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 52.268347100219714 0.028397529699942435 2 VYVVSVS{I|L} 8 5 55.598 0 0 5.2923 0 0 186.0791950910172 0 186.0791950910172 0 22.110403483680656 0 0 0 1 0 0.9247425010840047 0 VYVVSVS{I|L} 5.2923 - 888 NaN NaN 178464.5 NaN 11123 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14398 63.876 NaN 200200 35 0 19314 0.261 + 11462 IYQFIMDRF 9 44 624.8076996108747 1247.6008462885493 2 624.8079833984375 MULTI HCD FTMS 0 0 0 14393 106627.03125 0.38365833290136986 5 -0.13750457763671875 5 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 51.41523569358685 0.02959097413485123 2 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[RD]{M(Oxidation (M))|F} 9 0 + 70.328 0 0 5.637 5.637 87.937 0 0 0 1.3823531182862325 64.84305011473481 1.3823531182862325 9.208187539523749 0 2.3494850021680094 2 0 0 + + [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[RD]{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}[RD]{M(Oxidation (M))|F} 5.637;4.899 +;- + 133 NaN NaN 129134.2 NaN 11124 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14399 63.879 NaN 453570 35 0 56903 0.261 + 34314 YPDTDVILM 9 79 541.7573407412204 1081.5001285492408 2 541.757568359375 MULTI HCD FTMS 0 0 0 14393 153619.296875 0.19751023005171056 -7 0.20824432373046875 6 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 44.40701690623563 0.04511410083598184 2 YV{I|L}{I|L}{M(Oxidation (M))|F} 5 4 51.938 0 0 4.8024 0 0 428.154100486525 0 428.154100486525 0 27.99340549453582 0 0 0 1.8494850021680094 0 0 0 YV{I|L}{I|L}{M(Oxidation (M))|F} 4.8024 - 509 NaN NaN 145537.7 NaN 11125 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14400 63.882 NaN 140380 35 0 25845 0.262 + 22018 QFSEAFSLLNF 11 45 434.88225543735075 NaN 0 434.8824462890625 PEAK HCD FTMS 0 0 0 14393 31367.298828125 0.27079809682558986 4 -0.11132049560546875 7 Unmodified _QFSEAFSLLNF_ REV__ENSG00000175267|ENST00000389398|VWA3A;REV__nc|ENSG00000175267|A6NCI4-2|VWA3A;REV__nc|ENSG00000175267|A6NCI4-3|VWA3A;REV__nc|ENSG00000175267|A6NCI4-4|VWA3A 2.6312355333042263 0.3346560860168035 2 Y 1 -1 5.4846 0 0 0.63204 0 0 72.40341360732027 629.2622164361936 701.6656300435139 0 0 0 0 0 0 0 0 0 Y 0.63204 - 2 + NaN NaN 114813.7 NaN 11126 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14401 63.886 NaN 136560 35 0 20561 0.261 + 30509 VMPCGILDL 9 49 480.7477625254665 959.480972117733 2 480.7474365234375 MULTI HCD FTMS 0 0 0 14393 98014.328125 0.879164876218731 -2 0.055454254150390625 8 Unmodified _VMPCGILDL_ REV__ENSG00000277791|ENST00000619426|PSMB3 16.942295170755138 0.21397866736869717 2 VW{I|L}D{I|L} 5 -1 39.469 0 0 4.1136 0 0 315.1216297834 0 315.1216297834 0 24.86494082808356 0 0 0 0.8494850021680094 0 0.3807196863200844 0 VW{I|L}D{I|L} 4.1136 - 26 NaN NaN 103984.9 NaN 11127 3272 14393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14403 63.89 NaN 9219400 35 0 2739700 0.327 + 24701 RYLTVAAVF 9 79 520.3003137195551 1038.5860745059101 2 520.3014526367188 MULTI HCD FTMS 0 0 0 14402 5311313.5 0.14168160402171678 6 -0.16687774658203125 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 51.629811660486645 0.02929079705179888 2 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 81.977 0 0 7.8931 7.8931 93.703 0 0 0 14.180307788363109 63.01879128511182 14.180307788363109 13.349870154235873 0 2.2302046884880937 1.154901959985743 0.8494850021680094 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]V{M(Oxidation (M))|F};{[VA]|[{I|L}G]}AVTRY{I|L}{M(Oxidation (M))|F};[Q{I|L}]VTRY{I|L}{M(Oxidation (M))|F} 7.8931;6.6078;5.6174;4.9058;3.5062;3.3418 -;-;-;-;-;- 475 NaN NaN 599269.9 NaN 11128 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14404 63.895 NaN 1767500 35 0 288350 0.261 + 29096 TYGEIFEKF 9 108 567.2792195549672 1132.5438861767343 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14402 1385857.125 0.06591275148473554 35 -0.958984375 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 114.18643581695662 0.002258955990713129 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 100 0 0 8.83 8.83 96.879 0 0 0 21.617741110481404 16.478174818886373 16.478174818886373 30.450936061923557 0 2.5356668758921828 2 0.6421590589602533 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};[YT][TP]T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}T{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{M(Oxidation (M))|F}E{[CA]|SS}{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SP{I|L}[YT]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KT{I|L} 8.83;6.1413;6.1245;5.6211;4.9869;4.8505;4.806;4.7419;4.559;4.5499 +;-;-;-;-;-;-;-;-;- + 5554 + NaN NaN 359179.4 NaN 11129 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14405 63.898 NaN 499260 35 0 53721 0.261 + 18560 MVERFQDEF 9 82 600.7701682092166 1199.5257834852332 2 600.7698974609375 MULTI HCD FTMS 0 0 0 14402 265791.03125 0.8952283506122011 -1 0.029544830322265625 3 Unmodified _MVERFQDEF_ tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1 14.838274106304384 0.23215694253501695 2 [{M(Oxidation (M))|F}T]DTVRWE{M(Oxidation (M))|F} 9 6 + 59.759 0 0 4.9819 4.9819 89.924 0 0 0 7.147642715192504 39.525166531265725 7.147642715192504 21.293256987620524 0 2.504432191740108 0 0.7302046884880937 0 [{M(Oxidation (M))|F}T]DTVRWE{M(Oxidation (M))|F};[WE]Y[Q{I|L}]WE{M(Oxidation (M))|F};YY[PA][QP]WE{M(Oxidation (M))|F};YY[PG]R[WE]{[ET]|[MV]};[WY]E[Q{I|L}]WE{M(Oxidation (M))|F};[WY]DV[VG]WE{M(Oxidation (M))|F};[WE][{M(Oxidation (M))|F}T]R[VS]E{M(Oxidation (M))|F};[WE][{M(Oxidation (M))|F}T][VG]WE{M(Oxidation (M))|F};[WE][{M(Oxidation (M))|F}T]R{[DA]|[EG]}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]DTVR{[QG]|[NA]}[YN] 4.9819;3.2067;2.4787;2.2334;2.1752;2.0372;1.9847;1.9847;1.9847;1.8988 -;-;-;-;-;-;-;-;-;- 894 NaN NaN 185549.4 NaN 11130 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14406 63.902 NaN 277220 35 0 18391 0.261 + 20033 NYIGLINRI 9 58 538.3163769983624 1074.6182010635248 2 538.3162841796875 MULTI HCD FTMS 0 0 0 14402 33815.55078125 0.006638960271383082 56 -1.5076446533203125 4 Unmodified _NYIGLINRI_ ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2 56.17704186161178 0.022929533404884107 2 [YN]{I|L}G{I|L}{I|L}[RN]{I|L} 9 0 + 53.429 0 0 4.9719 4.9719 91.585 0 0 0 8.401866330718505 44.87241098794334 8.401866330718505 53.428929684992056 0 1.9876954943324545 1.5228787452803376 0 0.7742275032520141 + + [YN]{I|L}G{I|L}{I|L}[RN]{I|L} 4.9719 + + 56 NaN NaN 141435.5 NaN 11131 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14407 63.905 NaN 275860 35 0 15976 0.261 + 3094 EAINVEQAF 9 84 510.7535634563173 NaN 0 510.7381286621094 PEAK HCD FTMS 0 0 0 14402 47493.0078125 0.3795534308533836 4 -0.10795974731445312 5 Unmodified _EAINVEQAF_ ENSG00000075785|ENST00000265062|RAB7A 34.93206674587334 0.09452846457412575 2 EQA 3 6 30.155 0 0 2.9579 0 0 526.274743904426 162.05687593629685 688.3316198407229 0 0 0 0 0 1.8494850021680094 0 0.28872548999643577 0.2742275032520141 + EQA 2.9579 + + 448 NaN NaN 136872.5 NaN 11132 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14408 63.908 NaN 476890 35 0 80209 0.261 -1 LPAGDALLQM 10 73 522.7729075066111 1043.531262080022 2 522.772705078125 MULTI HCD FTMS 0 0 0 14402 44267.59765625 0.41553050489399934 5 -0.14408111572265625 6 Oxidation (M) _LPAGDALLQM(Oxidation (M))_ ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF 26.268140514670165 0.2654086933305545 2 {I|L}Q{M(Oxidation (M))|F} 3 -1 37.677 0 0 3.6106 0 0 637.3425546599034 0 637.3425546599034 0 33.60924374808178 0 0 0 1.4247425010840047 0 0 0.3252574989159953 {I|L}Q{M(Oxidation (M))|F} 3.6106 + + 144 + NaN NaN 163365.5 NaN 11133 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14409 63.912 NaN 193130 35 0 67387 0.261 + 1648 CCCHCCEP 8 48 449.1136153407245 NaN 0 449.1494445800781 PEAK HCD FTMS 0 0 0 14402 20605.74609375 0.7194027469222932 1 -0.026111602783203125 7 Unmodified _CCCHCCEP_ ENSG00000204887|ENST00000377747|KRTAP1-4 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118260 NaN 11134 3273 14402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14411 63.917 NaN 2820200 35 0 1531400 0.327 -1 0 74 427.30262838993985 852.5907038466797 2 427.3026428222656 MULTI HCD FTMS 0 0 0 14410 1664737.125 0.6123654732819815 -5 0.14380645751953125 1 NaN NaN 2 {I|L}[KS] 3 -1 5.9421 0 0 0.69695 0 0 506.3681221051536 0 506.3681221051536 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}[KS] 0.69695 - 7 NaN NaN 511009.4 NaN 11135 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14412 63.921 NaN 970750 35 0 315220 0.261 -1 TAMDVVYAL 9 55 499.7467790357058 997.4790051382116 2 499.74700927734375 MULTI HCD FTMS 0 0 0 14410 464690.78125 0.7763289828240906 -7 0.2083282470703125 2 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 44.40701690623563 0.04511410083598184 2 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2151948159665 0 533.2151948159665 0 39.195925227640984 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 36 NaN NaN 242746.7 NaN 11136 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14413 63.925 NaN 1612400 35 0 189340 0.261 + 23436 RLPEPLPSW 9 95 547.8030956982246 1093.5916384632492 2 548.2899780273438 MULTI HCD FTMS 0 0 0 14410 95183.875 1 0 0 3 Unmodified _RLPEPLPSW_ ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF 31.26834338654808 0.10542797264966089 2 VV[WR]PSW 7 6 21.657 0 0 1.9803 0 0 165.11881239078667 0 165.11881239078667 0 1.5699773394339829 0 0 0 0.7742275032520141 0 1.2689301784845295 0 VV[WR]PSW 1.9803 - 1145 + NaN NaN 333974.9 NaN 11137 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14414 63.928 NaN 470040 35 0 39711 0.261 -1 KYMDVQFDF 9 77 604.7680784656989 1207.5216039981976 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14410 304393.15625 0.13173565903500162 22 -0.6090812683105469 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 2 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 63.492 0 0 5.2581 0 0 262.09529311347814 0 262.09529311347814 0 39.31109192601312 0 0 0 1.4247425010840047 0 0 0.805462187404089 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.2581 - 941 NaN NaN 165365 NaN 11138 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14415 63.931 NaN 373420 35 0 43096 0.261 + 5214 FFDAELSQM 9 52 552.2394798963711 NaN 0 552.239501953125 PEAK HCD FTMS 0 0 0 14410 139225.109375 0.5665022973765975 -5 0.14380645751953125 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 62.57269311338072 0.020551833314469407 2 E{I|L}SQ 4 5 43.972 0 0 3.9885 0 0 480.2014196542671 162.02297388248283 642.22439353675 0 0 0 0 0 1.8807196863200843 0 0.2742275032520141 0.3494850021680094 + E{I|L}SQ 3.9885 + + 87 + NaN NaN 141777.5 NaN 11139 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14416 63.934 NaN 156070 35 0 13608 0.261 + -1 DAYLCFWL 8 53 544.2491153887769 1086.4836778443537 2 544.2484741210938 MULTI HCD FTMS 0 0 0 14410 55749.7578125 0.19992725149153215 15 -0.4323921203613281 6 Carbamidomethyl (C) _DAYLC(Carbamidomethyl (C))FWL_ REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|0|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|5 2.577480529830294 0.5381683276125971 2 P 1 -1 3.0989 0 0 0.28523 0 0 62.93229101786648 923.4992119941173 986.4315030119839 0 0 0 0 0 0 0 0 0 P 0.28523 - 9 + NaN NaN 107360.8 NaN 11140 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14417 63.938 NaN 60346 35 0 4153.5 0.261 + 18287 MPDVDLHL 8 44 470.23406593152265 938.4535789298453 2 470.2336120605469 MULTI HCD FTMS 0 0 0 14410 26572.51171875 0.8126498393261896 1 -0.026153564453125 7 Unmodified _MPDVDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 90119.2 NaN 11141 3274 14410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14419 63.943 NaN 2325100 35 0 214550 0.327 + 933 AYDTVRWEF 9 117 593.7801551949964 1185.5457574567927 2 593.7802124023438 MULTI HCD FTMS 0 0 0 14418 832073.6875 0.4296540855090821 3 -0.09181594848632812 1 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 143.90916361153978 1.5265063399744E-05 2 AYDTVRWE{M(Oxidation (M))|F} 9 0 + 127.34 0 0 10.741 10.741 96.733 0 0 0 79.47025986567944 14.09256854528806 14.09256854528806 15.41392685158226 0 3.1549471895720984 2 2.0994850021680094 0 + + AYDTVRWE{M(Oxidation (M))|F};AYDTVWRE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR{I|L}DS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRD{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVREVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVREW{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRDTV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]EW{M(Oxidation (M))|F} 10.741;9.4405;9.279;8.9456;8.7303;8.6917;8.5023;8.3946;8.1793;7.6179 +;-;+;-;-;-;-;-;-;- + 6845 + NaN NaN 456043.5 NaN 11142 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14420 63.947 NaN 1301300 35 0 208440 0.261 + 23453 RLPSETYFF 9 78 580.2926199930132 1158.5706870528263 2 580.29296875 MULTI HCD FTMS 0 0 0 14418 470475.625 0.59280991732283 3 -0.09181594848632812 2 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 56.17704186161178 0.022929533404884107 2 [R{I|L}][PS]TEY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 70.881 0 0 6.118 6.118 91.361 0 0 0 15.13559966262001 49.23902187720806 15.13559966262001 17.83809673312028 0 1.9247425010840047 1.5228787452803376 1.2302046884880937 0 [R{I|L}][PS]TEY{M(Oxidation (M))|F}{M(Oxidation (M))|F};[R{I|L}][PS]TYE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[R{I|L}][PS]YTE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.118;4.5783;4.3185 -;-;- 169 NaN NaN 296176.7 NaN 11143 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14421 63.951 NaN 1201800 35 0 157590 0.261 + 11853 KFAEEFYSF 9 95 584.2714072380124 1166.5282615428248 2 584.271484375 MULTI HCD FTMS 0 0 0 14418 326344.3125 0.3065445969809974 -4 0.11451339721679688 3 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 145.12958885780327 1.3974915176135797E-05 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} + + 99.615 2.2185 0.80625 8.5394 8.5394 68.183 0 0 0 0 64.57448469991157 0 0 0 3.3252574989159953 0 2.278659694992122 0 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 8.5394 + + 3547 + NaN NaN 288198.5 NaN 11144 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14422 63.954 NaN 363090 35 0 34140 0.261 -1 WRMAKGFVM 9 82 571.2878509836182 1140.5611490340364 2 571.770751953125 MULTI HCD FTMS 0 0 0 14418 21123.849609375 0.4407546753674813 7 -0.20302200317382812 4 Oxidation (M) _WRMAKGFVM(Oxidation (M))_ ENSG00000145569|ENST00000274217|OTULINL;ENST00000513825.1_1_5:14601096-14602296:+|nuORF 16.942295170755138 0.21397866736869717 2 C{M(Oxidation (M))|F}PK[RD]V{M(Oxidation (M))|F} 8 -1 26.068 0 0 2.2855 0 0 130.12738132660564 0 130.12738132660564 0 17.65662222408956 0 0 0 0.6989700043360187 0 0.6505149978319906 0 C{M(Oxidation (M))|F}PK[RD]V{M(Oxidation (M))|F} 2.2855 - 156 + NaN NaN 153603.2 NaN 11145 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14423 63.957 NaN 725240 35 0 162130 0.264 + 17432 LYRVPGGL 8 66 437.7608244829045 873.5070960326091 2 437.76092529296875 MULTI HCD FTMS 0 0 0 14418 78507.734375 0.10183624852763426 8 -0.23256301879882812 5 Unmodified _LYRVPGGL_ REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF 23.1484247019978 0.4234759064137959 2 {I|L}YTVRA 6 -1 51.781 0 0 5.9279 0 0 0 167.08205591373283 167.08205591373283 17.048574806510274 0 0 0 0 1 1.6989700043360187 0.6989700043360187 0.28872548999643577 {I|L}YTVRA 5.9279 - 350 + NaN NaN 202127.3 NaN 11146 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14424 63.961 NaN 499810 35 0 33742 0.261 + 934 AYDTVRWEF 9 80 593.7801551949964 1185.5457574567927 2 595.2850952148438 MULTI HCD FTMS 0 0 0 14418 49756.703125 0.34182800317007056 1 -0.029510498046875 6 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 43.77239144664712 0.04802738721622131 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRT{M(Oxidation (M))|F}[DV] 10 4 + 58.757 0 0 4.9561 4.9561 87.718 0 0 0 4.790032769639957 40.5691747197899 4.790032769639957 9.515449934959719 0 1.5387254899964358 2 0.6237125054200234 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRT{M(Oxidation (M))|F}[DV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRTE[MT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTKQW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTKQ[{M(Oxidation (M))|F}V]{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[KS]Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[KS]{[MG]|[TS]}{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}T][RV]TD[DV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{M(Oxidation (M))|F}T][RV]TN{[QS]|[NT]} 4.9561;4.1535;3.304;3.2142;3.2142;3.0232;2.9119;2.8257;2.6382;2.6278 -;-;-;-;-;-;-;-;-;- 1154 NaN NaN 172381.2 NaN 11147 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14425 63.964 NaN 184750 35 0 31059 0.262 + 7241 FSVAKTNII 9 55 496.79245748067217 991.5703620281444 2 496.7925720214844 MULTI HCD FTMS 0 0 0 14418 64038.375 0.37566652077370627 -1 0.026153564453125 7 Unmodified _FSVAKTNII_ REV__ENSG00000185100|ENST00000330877|ADSS1;REV__nc|ENSG00000185100|Q8N142-2|ADSS1 10.073929032068715 0.27331982688540024 2 VV{I|L} 3 -1 27.307 0 0 2.7539 0 0 662.3383045880875 0 662.3383045880875 0 20.925026409321266 0 0 0 0.5 0 0 0 VV{I|L} 2.7539 - 22 NaN NaN 113490.6 NaN 11148 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14426 63.967 NaN 199170 35 0 19247 0.261 -1 SFDGIIAMM 9 57 508.7249374824102 1015.4353220316204 2 508.72491455078125 MULTI HCD FTMS 0 0 0 14418 29627.580078125 0.37378783335876287 -4 0.11451339721679688 8 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 21.74664581756881 0.17247014374749275 2 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 49.909 0 0 4.9151 0 0 331.1563893048844 0 331.1563893048844 0 48.73835032203423 0 0 0 1 0 0.4247425010840047 0 TS{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9151 - 42 NaN NaN 115832.3 NaN 11149 3275 14418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14428 63.972 NaN 1249400 35 0 74672 0.327 + 27193 SYNNFFRMF 9 96 621.2740136938751 1240.53347445455 2 621.2741088867188 MULTI HCD FTMS 0 0 0 14427 784535.25 0.16375690299827608 -7 0.19947052001953125 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 98.386 0 0 7.9309 7.9309 91.945 0 0 0 17.98332479720628 16.478174818886373 16.478174818886373 9.208187539523749 0 3 1.0457574905606752 0.6747425010840047 1.610924374808178 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RP][MT];[{M(Oxidation (M))|F}T]R{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN[MT][RP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]SN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RP][MT] 7.9309;7.1887;7.1887;6.4813;5.8006;5.739;2.6454;2.1486;2.1438;1.9411 +;-;-;-;-;-;-;-;-;- + 2829 NaN NaN 280105.6 NaN 11150 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14429 63.977 NaN 518220 35 0 24516 0.261 -1 TYYPALNKM 9 101 558.7758487810806 NaN 0 558.7899169921875 PEAK HCD FTMS 0 0 0 14427 8627.5078125 0.9991707664642215 1 -0.02618408203125 2 Oxidation (M) _TYYPALNKM(Oxidation (M))_ TP53|p.S127Y|1|0.4|ENSG00000141510|chr17:7675232-7675232|G/T|missense_variant 20.453626601364224 0.18435338882370536 2 K{M(Oxidation (M))|F}RDQ 5 -1 23.237 0 0 2.083 0 0 165.04766987747456 273.1240633600219 438.1717332374965 0 0 0 0 0 0.3252574989159953 0 0.9049471895720984 0.3054621874040891 K{M(Oxidation (M))|F}RDQ 2.083 - 1342 + NaN NaN 167449.8 NaN 11151 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14430 63.98 NaN 443570 35 0 33095 0.261 + 27828 TAYWKELSL 9 73 555.7948470810376 1109.575141228875 2 555.7938232421875 MULTI HCD FTMS 0 0 0 14427 113026.5625 0.22804678122609767 9 -0.2586555480957031 3 Unmodified _TAYWKELSL_ ENSG00000166579|ENST00000334527|NDEL1;ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-2|NDEL1;nc|ENSG00000166579|Q9GZM8-3|NDEL1 37.07464296494664 0.07877380486334713 2 [TA]YW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}S{I|L} 9 0 + 50.085 0 0 4.5139 4.5139 89.503 0 0 0 5.6424927368725974 38.09562510389476 5.6424927368725974 24.693962872398032 0 2 0 0.3252574989159953 0 + + [TA]YW{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}S{I|L};[Y{I|L}]AA{NN|[MP]|[D{I|L}]|[EV]}KY[PG];[YG]VV{NN|[MP]|[D{I|L}]|[EV]}KY[PG];{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[QN]|[E{I|L}]|[KN]}{I|L}S{I|L};[QP]G[VS][Y{M(Oxidation (M))|F}]{I|L}S{I|L} 4.5139;2.2884;0.9159;0.64621;0.51058 +;-;-;-;- + 142 NaN NaN 151496.4 NaN 11152 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14431 63.984 NaN 262750 35 0 18818 0.261 + 24300 RYFPTQALNF 10 69 628.8237861212817 1255.6330193093634 2 628.824951171875 MULTI HCD FTMS 0 0 0 14427 118719.6796875 0.9164982874595236 2 -0.062305450439453125 4 Unmodified _RYFPTQALNF_ ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000169100|ENST00000381401|SLC25A6 47.7319792270244 0.08603782309361356 2 [YR]{M(Oxidation (M))|F}[TP]QA{I|L}N{M(Oxidation (M))|F} 10 0 + 49.703 0 0 3.9584 3.9584 84.783 0 0 0 4.884381005764311 35.01016889216956 4.884381005764311 9.164539485499255 0 1.3494850021680094 0 0.3807196863200844 0.3807196863200844 + + [YR]{M(Oxidation (M))|F}[TP]QA{I|L}N{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}[TP][AG]A{I|L}N{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}[TP]QA{I|L}GG{M(Oxidation (M))|F} 3.9584;3.2285;3.2285 +;-;- + 161 NaN NaN 145552.4 NaN 11153 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14432 63.987 NaN 131620 35 0 8082.8 0.263 + 1512 AYVGDLQTL 9 46 490.2581900070001 978.5018270808002 2 490.2586669921875 MULTI HCD FTMS 0 0 0 14427 65525.8515625 0.9392172880386065 2 -0.062305450439453125 5 Unmodified _AYVGDLQTL_ ENSG00000065802|ENST00000264607|ASB1 41.95555342248728 0.056367691549927025 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG]{I|L}QT{I|L} 9 0 + 65.952 0 0 6.7401 6.7401 89.785 0 0 0 24.13734275855269 55.49471895720984 24.13734275855269 9.208187539523749 0 1.610924374808178 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG]{I|L}QT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG]{I|L}[AG]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[DG][WR]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ET]|[MV]}{I|L}QT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RD]{I|L}[WR];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RD][WR]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[RE]|[WV]}[WR];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ET]|[MV]}{I|L}[AG]T{I|L} 6.7401;5.7991;4.2616;3.7727;3.6515;3.5251;3.2989;2.8262 +;-;-;-;-;-;-;- + 128 NaN NaN 111639.7 NaN 11154 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14433 63.99 NaN 232140 35 0 13722 0.261 + 32323 VYVDLGGSHVF 11 62 596.8037942801744 1191.5930356271488 2 596.8051147460938 MULTI HCD FTMS 0 0 0 14427 62621.29296875 0.04794117716720346 29 -0.7918968200683594 6 Unmodified _VYVDLGGSHVF_ ENSG00000165733|ENST00000374518|BMS1 20.41453444215458 0.279209903849948 2 [YV]{[QV]|[N{I|L}]|[RA]|[KV]}[EP]DVP{M(Oxidation (M))|F} 10 7 + 40.92 0 0 3.4341 3.4341 81.966 0 0 0 4.060508939769747 20.118252904652465 4.060508939769747 3.5391719390811716 0 0 1.6989700043360187 0 0.3807196863200844 [YV]{[QV]|[N{I|L}]|[RA]|[KV]}[EP]DVP{M(Oxidation (M))|F};[YV]{[QV]|[N{I|L}]|[RA]|[KV]}[EP]DPV{M(Oxidation (M))|F} 3.4341;3.1371 -;- 86 NaN NaN 130172.9 NaN 11155 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14434 63.993 NaN 221910 35 0 41300 0.261 + -1 FSDFRFRIM 9 47 617.8049811765299 NaN 0 617.7460327148438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _FSDFRFRIM(Oxidation (M))_ REV__nc|ENSG00000163964|Q8TBF5-2|PIGX 1.844237919475145 0.28630992268396543 2 D 1 -1 4.6041 0 0 0.37323 0 0 671.230597810077 444.31109911827366 1115.5416969283506 0 0 0 0 0 0 0 0 0 D 0.37323 + + 3 + NaN NaN 120859.4 NaN 11156 3276 14427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14436 63.998 NaN 834770 35 0 90743 0.326 + 21859 QAVQVDVEL 9 67 500.7691286614422 999.5237043896844 2 500.76934814453125 MULTI HCD FTMS 0 0 0 14435 219988.5 0.15546266960671365 -1 0.02618408203125 1 Unmodified _QAVQVDVEL_ ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 89.40071534611396 0.0045416704840156395 2 QVDVE{I|L} 6 3 71.266 0 0 7.13 0 0 298.16411025215 0 298.16411025215 0 60.975409843999344 0 0 0 2.110924374808178 0 0.6747425010840047 1.0044321917401078 + QVDVE{I|L} 7.13 + + 444 NaN NaN 236211.2 NaN 11157 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14437 64.003 NaN 665430 35 0 65061 0.261 + 27659 TALFVEHVL 9 76 514.7926130132719 1027.5706730933437 2 514.7926635742188 MULTI HCD FTMS 0 0 0 14435 201437.40625 0.4305034762537418 3 -0.09175491333007812 2 Unmodified _TALFVEHVL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 92.4914307365334 0.004460681868130716 2 [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L} 9 0 + 103.23 0 0 10.046 10.046 95.08 0 0 0 14.578095681520566 14.578095681520566 14.578095681520566 9.771212547196626 0 2.8494850021680094 1.6989700043360187 0.6139829889124311 0 + + [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L};[TA]{M(Oxidation (M))|F}{I|L}VEHV{I|L};[TA]{I|L}NPV{M(Oxidation (M))|F}[PG]{I|L};[TA]{I|L}NPV{M(Oxidation (M))|F}{I|L}[PG];[TA]{I|L}{M(Oxidation (M))|F}V[HV]E{I|L};[TA]{M(Oxidation (M))|F}{I|L}VPN[PG]{I|L};[TA]{I|L}{M(Oxidation (M))|F}VPN[PG]{I|L};[TA]{M(Oxidation (M))|F}{I|L}VPN{I|L}[PG];[TA]{I|L}{M(Oxidation (M))|F}VPN{I|L}[PG];[TA]{I|L}GGPV{M(Oxidation (M))|F}[PG]{I|L} 10.046;9.095;6.7425;6.5489;6.2091;6.1755;6.1533;5.9819;5.9597;5.8506 +;-;-;-;-;-;-;-;-;- + 805 NaN NaN 200271.4 NaN 11158 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14438 64.006 NaN 470670 35 0 34692 0.261 + 3285 EEFELLGKAY 10 81 599.8037213345885 1197.592889735977 2 599.8030395507812 MULTI HCD FTMS 0 0 0 14435 105327.546875 0.4477772959656114 1 -0.036121368408203125 3 Unmodified _EEFELLGKAY_ ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;nc|ENSG00000184110|Q99613-2|EIF3C 90.13494162714682 0.000992056157953851 2 EE{M(Oxidation (M))|F}E{I|L}{I|L}GKAY 10 0 + 74.742 0 0 6.241 6.241 85.979 0 0 0 3.8734094939506747 3.8734094939506747 3.8734094939506747 3.8734094939506747 0 2.5356668758921828 0 0 0 + + EE{M(Oxidation (M))|F}E{I|L}{I|L}GKAY;[{M(Oxidation (M))|F}E]{I|L}EE{I|L}GKAY;EE{M(Oxidation (M))|F}E{I|L}VAKAY;EE{M(Oxidation (M))|F}E{I|L}{I|L}[KQ]Y;[{M(Oxidation (M))|F}E]{I|L}EE{I|L}[KQ]Y 6.241;5.9176;5.0896;3.6459;3.0376 +;-;-;-;- + 827 + NaN NaN 156944 NaN 11159 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14439 64.01 NaN 291480 35 0 40595 0.261 + -1 HVIEDSMRTD 10 69 609.7749070771855 1217.535261221171 2 609.7747802734375 MULTI HCD FTMS 0 0 0 14435 106729.421875 0.5447630852487324 1 -0.036121368408203125 4 Oxidation (M) _HVIEDSM(Oxidation (M))RTD_ REV__ENSG00000139182|ENST00000266546|CLSTN3;REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3 3.5964929083625545 0.45626689593999237 2 RTWE{M(Oxidation (M))|F} 5 -1 27.959 0 0 2.2963 0 0 480.20186049629064 0 480.20186049629064 0 21.475540908469597 0 0 0 0 0 0 0 RTWE{M(Oxidation (M))|F} 2.2963 - 57 NaN NaN 129271.3 NaN 11160 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14440 64.013 NaN 287100 35 0 48080 0.261 -1 IYCFLRCME 9 56 625.7722964343236 NaN 0 625.7880249023438 PEAK HCD FTMS 0 0 0 14435 14055.3955078125 0.4375978099807165 2 -0.058917999267578125 5 Carbamidomethyl (C),Oxidation (M) _IYC(Carbamidomethyl (C))FLRCM(Oxidation (M))E_ ENSG00000116863|ENST00000373178|ADPRS 5.230669730166228 0.26989974671959066 2 S{I|L} 2 -1 9.464 0 0 0.7574 0 0 775.4057551227503 270.9842928522094 1046.3900479749598 0 0 0 0 0 0 0 0 0 S{I|L} 0.7574 - 23 + NaN NaN 151206.4 NaN 11161 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14441 64.016 NaN 238230 35 0 39364 0.263 + 763 ASGLEALDSL 10 50 488.2532897412744 974.4920265493488 2 488.25341796875 MULTI HCD FTMS 0 0 0 14435 58576.625 0.1030218916545789 -6 0.17020797729492188 6 Unmodified _ASGLEALDSL_ LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant 49.93300154707207 0.07803319134556608 2 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L} 9 4 + 59.403 0 0 6.0958 6.0958 87.422 0 0 0 8.969771685254386 31.382353118286233 8.969771685254386 8.05462187404089 0 1.4247425010840047 0 1.2302046884880937 0 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}S{NN|[MP]|[D{I|L}]|[EV]}{I|L} 6.0958;5.2692;4.0114;2.5289 -;-;-;- 115 NaN NaN 139221.6 NaN 11162 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14442 64.02 NaN 192070 35 0 20735 0.261 + 27027 SYLSRLQYF 9 63 588.8059345962146 1175.597316259229 2 588.8067016601562 MULTI HCD FTMS 0 0 0 14435 79355.3046875 0.8218560351220285 -2 0.055694580078125 7 Unmodified _SYLSRLQYF_ ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2 37.07464296494664 0.07877380486334713 2 {I|L}QY{M(Oxidation (M))|F} 4 5 41.855 0 0 3.5603 0 0 606.3115101544937 0 606.3115101544937 0 19.399647565975254 0 0 0 1.2302046884880937 0 0 0 + {I|L}QY{M(Oxidation (M))|F} 3.5603 + + 187 NaN NaN 124279.1 NaN 11163 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14443 64.023 NaN 131670 35 0 15066 0.261 + 16834 LYECTGQFDF 10 47 611.7584091654534 NaN 0 611.7579956054688 PEAK HCD FTMS 0 0 0 14435 28915.263671875 0.3593945981963433 8 -0.23247146606445312 8 Unmodified _LYECTGQFDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 9.5439744041441 0.33201596970086106 2 D{M(Oxidation (M))|F}N 3 -1 26.867 0 0 2.1995 0 0 165.08009850493164 677.2608126275999 842.3409111325316 0 0 0 0 0 1.305462187404089 0 0 0 D{M(Oxidation (M))|F}N 2.1995 - 20 + NaN NaN 104897.2 NaN 11164 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14444 64.026 NaN 229110 35 0 12568 0.261 + 33072 YDISQLFDF 9 77 574.2688858494805 1146.523218765761 2 574.2691650390625 MULTI HCD FTMS 0 0 0 14435 25541.93359375 0.043861609143268296 42 -1.1318550109863281 9 Unmodified _YDISQLFDF_ ENSG00000100632|ENST00000557016|ERH;ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENST00000523006.1_1_7:139219111-139219246:+|nuORF 6.2057823575117 0.30397260197431997 2 [YE][VP][QT]YT{M(Oxidation (M))|F} 9 6 + 16.456 0 0 1.4353 1.4353 83.396 0 0 0 3.81878531170703 4.008335293194106 3.81878531170703 9.030899869919438 0 0.4247425010840047 0.958607314841775 0 0 [YE][VP][QT]YT{M(Oxidation (M))|F};[YE][PA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YT{M(Oxidation (M))|F} 1.4353;0.64758 -;- 138 + NaN NaN 122225.7 NaN 11165 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14445 64.03 NaN 181020 35 0 17377 0.262 -1 DLIPCSDL 8 64 466.7231313880867 931.4317098429734 2 467.2341003417969 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _DLIPC(Carbamidomethyl (C))SDL_ ENSG00000100373|ENST00000216211|UPK3A 4.75600775471527 0.5349361699807423 2 {I|L}N{I|L} 3 -1 23.188 0 0 2.4895 0 0 573.2108011165318 0 573.2108011165318 0 13.723637474483468 0 0 0 0 0 0 0 {I|L}N{I|L} 2.4895 - 19 NaN NaN 112105.5 NaN 11166 3277 14435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14447 64.034 NaN 8578400 35 0 2402200 0.326 + 24702 RYLTVAAVF 9 100 520.3003137195551 1038.5860745059101 2 520.300537109375 MULTI HCD FTMS 0 0 0 14446 5309217.5 0.1416256923075938 11 -0.314422607421875 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 60.07390631473393 0.0174780869009295 2 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 80.09 0 0 7.7115 7.7115 93.979 0 0 0 11.399699876253777 70.7497085974763 11.399699876253777 16.237125054200234 0 2.25 1.0969100130080565 1.1549471895720984 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAVA{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVAA{M(Oxidation (M))|F}V;[VP][HV]TVAAV{M(Oxidation (M))|F};[VP]{[TV]|[{I|L}S]}HVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]V{M(Oxidation (M))|F};[Y{I|L}]RTVAG{M(Oxidation (M))|F}{I|L};[Y{I|L}]RQ[{I|L}T]V{M(Oxidation (M))|F} 7.7115;6.1481;6.0719;6.0719;5.7247;5.6251;5.0391;4.3877;4.3119;4.2181 -;-;-;-;-;-;-;-;-;- 908 NaN NaN 934634.9 NaN 11167 3278 14446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14448 64.039 NaN 1384800 35 0 195400 0.261 + 34315 YPDTDVILM 9 86 541.7573407412204 1081.5001285492408 2 541.7577514648438 MULTI HCD FTMS 0 0 0 14446 675766.5625 0.8688414277096569 -1 0.036121368408203125 2 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 70.71552829651908 0.008856681705782516 2 DYV{I|L}{I|L}{M(Oxidation (M))|F} 6 4 65.24 0 0 6.0324 0 0 313.1273365705094 0 313.1273365705094 0 40.887670600924295 0 0 0 1.8807196863200843 0 1.1307196863200843 0 DYV{I|L}{I|L}{M(Oxidation (M))|F} 6.0324 - 703 NaN NaN 305669.4 NaN 11168 3278 14446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14449 64.042 NaN 360850 35 0 39077 0.261 + 685 APVFRDYVF 9 73 557.289913659839 1112.565274386478 2 557.2900390625 MULTI HCD FTMS 0 0 0 14446 164161.375 0.8221454948639422 2 -0.055633544921875 3 Unmodified _APVFRDYVF_ ENSG00000093072|ENST00000399837|ADA2 22.65808497894818 0.16459551161911185 2 APV{M(Oxidation (M))|F}[EP][HA]V{M(Oxidation (M))|F} 10 4 + 40.635 0 0 3.6524 3.6524 89.494 0 0 0 24.463950151760653 9.665762445130497 9.665762445130497 40.63486257521106 0 1 0 0 0 APV{M(Oxidation (M))|F}[EP][HA]V{M(Oxidation (M))|F} 3.6524 - 67 + NaN NaN 156675.3 NaN 11169 3278 14446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14450 64.046 NaN 424240 35 0 34993 0.261 + 30635 VPDHVVWSL 9 73 526.2817979800001 1050.5490430268 2 526.2820434570312 MULTI HCD FTMS 0 0 0 14446 205941.40625 0.06326157718660694 32 -0.8705673217773438 4 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 24.020572477871973 0.15282392193088168 2 VSVS{I|L} 5 5 47.691 0 0 4.5396 0 0 547.2737710953622 0 547.2737710953622 0 34.59183145787911 0 0 0 0.9247425010840047 0 0.3494850021680094 0 VSVS{I|L} 4.5396 - 327 NaN NaN 173948.5 NaN 11170 3278 14446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14451 64.049 NaN 308190 35 0 46080 0.261 + 11843 KETDPEPEL 9 70 529.2564697265625 NaN 0 529.2564697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KETDPEPEL_ REV__ARHGAP39|p.R155Sfs*5|1|0.18|ENSG00000147799|chr8:144580875-144580893|CGCCGCGGGCCGCCCGGCC/-|frameshift_variant;REV__ENSG00000147799|ENST00000377307|ARHGAP39;REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39 20.453626601364224 0.18435338882370536 2 D 1 -1 7.7423 0 0 0.73487 0 0 240.2438748029311 695.2823124182949 935.5261872212259 0 0 0 0 0 0 0 0.4247425010840047 0 D 0.73487 + + 55 + NaN NaN 143771.8 NaN 11171 3278 14446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14452 64.052 NaN 334210 35 0 55684 0.261 -1 SPGSPVILQM 10 81 522.7729075066111 1043.531262080022 2 522.7734375 MULTI HCD FTMS 0 0 0 14446 29588.1875 0.277738010231451 10 -0.28488922119140625 6 Oxidation (M) _SPGSPVILQM(Oxidation (M))_ ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000100626|Q8N428-2|GALNT16 17.11289562659939 0.35104376501799556 2 {I|L}Q{M(Oxidation (M))|F} 3 -1 39.935 0 0 3.8269 0 0 637.3440500212315 0 637.3440500212315 0 31.97621246364342 0 0 0 1.5 0 0 0.3252574989159953 {I|L}Q{M(Oxidation (M))|F} 3.8269 + + 210 + NaN NaN 140809 NaN 11172 3278 14446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14454 64.057 NaN 2872100 35 0 1512600 0.327 -1 0 81 427.30262838993985 852.5907038466797 2 427.3026428222656 MULTI HCD FTMS 0 0 0 14453 2718535.25 1 0 0 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 10.713 0 0 1.2566 0 0 687.5116613435532 0 687.5116613435532 0 5.228787452803374 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2566 - 33 + NaN NaN 538125.9 NaN 11173 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14455 64.062 NaN 1556600 35 0 233680 0.261 + 29097 TYGEIFEKF 9 99 567.2792195549672 1132.5438861767343 2 567.2794799804688 MULTI HCD FTMS 0 0 0 14453 1457873.25 0.06933791044548962 41 -1.1055831909179688 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 114.18643581695662 0.002258955990713129 2 TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F} 9 0 + 95.859 0 0 8.464 8.464 96.397 0 0 0 31.64541676242027 16.478174818886373 16.478174818886373 30.086068268591518 0 2.4802046884880937 2 0.6421590589602533 0.23965182871044374 + + TYGE{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};TYGE{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};[YE]GT{I|L}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YE]GT{I|L}{M(Oxidation (M))|F}[VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};[YT][YV][PS]EK{M(Oxidation (M))|F};[YT]GE[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SP{I|L}[YT]K{M(Oxidation (M))|F} 8.464;5.8075;5.391;5.0574;4.8242;4.5004;4.4622;4.1672;4.0725;4.0409 +;-;-;-;-;-;-;-;-;- + 1892 + NaN NaN 326482.6 NaN 11174 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14456 64.065 NaN 1525400 35 0 159300 0.261 + -1 LSWAWSVVM 9 101 547.7703847787689 1093.5262166243376 2 548.2898559570312 MULTI HCD FTMS 0 0 0 14453 35594.24609375 0.08898319600373365 40 -1.07293701171875 3 Oxidation (M) _LSWAWSVVM(Oxidation (M))_ REV__ENST00000475229.2_1_1:1663720-1663897:-|nuORF 38.15118350030904 0.07383188072201104 2 ED{I|L}AHVV{M(Oxidation (M))|F} 8 -1 47.694 0 0 4.3615 0 0 165.07887465644689 0 165.07887465644689 0 26.383578386120234 0 0 0 0.6747425010840047 0 1.4674165578762486 0 ED{I|L}AHVV{M(Oxidation (M))|F} 4.3615 - 877 NaN NaN 327666.4 NaN 11175 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14457 64.069 NaN 281220 35 0 16069 0.261 -1 AQVMRTMGI 9 77 511.75984395280244 1021.5051349724049 2 511.7591247558594 MULTI HCD FTMS 0 0 0 14453 219931.984375 1 0 0 4 Oxidation (M) _AQVMRTM(Oxidation (M))GI_ TXNRD2|p.V494M|1|0.27|ENSG00000184470|chr22:19877200-19877200|C/T|missense_variant 22.736283301280096 0.1639198954644489 2 [QA]VQVDV[YT] 9 -1 + 31.577 0 0 3.0912 3.0912 85.402 0 0 0 6.976212463643424 2.8879553924696957 2.8879553924696957 9.208187539523752 0 0.3252574989159953 0 0.3252574989159953 0 [QA]VQVDV[YT];[QA]V[AG]VDV[YT];[QA]VT[SG]PV[YT];{[QN]|[E{I|L}]|[KN]}[HD]K[HM]{I|L};{[QN]|[E{I|L}]|[KN]}[HV][HQ]{M(Oxidation (M))|F}{I|L};[QA]V[YE][QA]T{I|L} 3.0912;2.1898;1.7227;1.0609;0.88847;0.2136 -;-;-;-;-;- 396 + NaN NaN 140059.4 NaN 11176 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14458 64.072 NaN 365440 35 0 66608 0.261 + 18713 MYPYIYHVL 9 55 607.8000505230617 1213.5855481129233 2 607.7999877929688 MULTI HCD FTMS 0 0 0 14453 125619.7109375 0.8705585702141003 1 -0.0328369140625 5 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 45.7499826716795 0.03894913563566938 2 Y[HV]{I|L} 4 5 23.188 0 0 1.9107 0 0 683.2997914044937 0 683.2997914044937 0 9.23516269895728 0 0 0 1 0 0 0 + Y[HV]{I|L} 1.9107 + + 39 NaN NaN 140948.3 NaN 11177 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14459 64.075 NaN 466810 35 0 45456 0.261 -1 PYMDSPQSIGF 11 80 629.2771095555245 1256.5396661778489 2 629.2767944335938 MULTI HCD FTMS 0 0 0 14453 142307.25 1 0 0 6 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 34.221707139014875 0.1741640856101893 2 S{I|L}G{M(Oxidation (M))|F} 4 -1 50.165 0 0 3.9923 0 0 834.3211007717451 0 834.3211007717451 0 30.499262912591046 0 0 0 1.4247425010840047 0 1 0 S{I|L}G{M(Oxidation (M))|F} 3.9923 + + 313 NaN NaN 152286.4 NaN 11178 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14460 64.079 NaN 190170 35 0 21003 0.261 + 29473 TYVENLRLL 9 45 560.8217480351958 1119.6289431371915 2 560.8220825195312 MULTI HCD FTMS 0 0 0 14453 69988.5859375 0.05662717701265581 33 -0.9001541137695312 7 Unmodified _TYVENLRLL_ ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion 29.84058131909904 0.11198220037953927 2 [YT]VE 4 5 42.747 0 0 3.818 0 0 0 624.3859346979124 624.3859346979124 24.78855930516417 0 0 0 0 0.805462187404089 2 0 0 + [YT]VE 3.818 + + 16 + NaN NaN 117130 NaN 11179 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14461 64.082 NaN 489840 35 0 27383 0.261 -1 0 77 596.9667455343069 1787.8784072031208 3 597.2996826171875 MULTI HCD FTMS 0 0 0 14453 115911.1328125 0.22929338883948927 -7 0.19642257690429688 8 NaN NaN 2 [YV]{I|L}EPSE{I|L}Y 9 -1 52.335 0 0 2.9272 0 0 0 691.3380989357958 691.3380989357958 26.36554685102226 0 0 0 0 0 1.6989700043360187 0.805462187404089 0 [YV]{I|L}EPSE{I|L}Y 2.9272 - 359 NaN NaN 163177.6 NaN 11180 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14462 64.085 NaN 174430 35 0 25425 0.264 + -1 TMNFMRLLFN 10 44 434.88225543735075 NaN 0 435.2220764160156 PEAK HCD FTMS 0 0 0 14453 34104.76171875 0.29443098102686677 11 -0.31446075439453125 9 Oxidation (M) _TM(Oxidation (M))NFMRLLFN_ REV__ENST00000461993.1_1_1:40535258-40537202:+|nuORF 1.4551175022131473 0.3389389101219087 2 VD 2 -1 10.969 0 0 1.2641 0 0 128.36389846051162 522.2693365678101 650.6332350283217 0 0 0 0 0 0 0 0 0 VD 1.2641 - 5 + NaN NaN 127030.1 NaN 11181 3279 14453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14464 64.09 NaN 857800 35 0 65480 0.327 + 935 AYDTVRWEF 9 87 593.7801551949964 1185.5457574567927 2 593.7802124023438 MULTI HCD FTMS 0 0 0 14463 389625.84375 0.2011893154440252 8 -0.22925567626953125 1 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 78.06048673739656 0.006479972202176041 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F} 9 0 + 100.81 0 0 8.5034 8.5034 92.763 0 0 0 24.76203644159419 93.63589823140842 24.76203644159419 9.208187539523749 0 2.774227503252014 2 0.9247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}ATVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]};[{M(Oxidation (M))|F}E]{[CA]|SS}VRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[KS]QQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KA]Q[KS]E{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KA][HT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KA][HT]AY{M(Oxidation (M))|F} 8.5034;7.7267;7.0295;6.1408;5.6454;5.3016;5.0261;4.4592;4.3515;4.2461 +;-;-;-;-;-;-;-;-;- + 1780 NaN NaN 226556.3 NaN 11182 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14465 64.095 NaN 629130 35 0 51113 0.261 -1 KYMDVQFDF 9 72 604.7680784656989 1207.5216039981976 2 604.7684326171875 MULTI HCD FTMS 0 0 0 14463 167214.703125 0.07236739284119177 28 -0.7592697143554688 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 51.487983226225225 0.029489205318603332 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 + 64.28 0 0 5.3233 5.3233 84.579 0 0 0 3.2568864632742844 40.60525350536075 3.2568864632742844 4.203103093438969 0 2.274227503252014 0 0 0.4247425010840047 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}Y{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}VYQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}YVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}ND{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}C{I|L}YQ{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.3233;4.9752;4.5607;4.2127;3.6873;3.5506;3.5456;3.3392;3.0042;2.6635 -;+;-;-;-;-;-;-;-;- + 1006 NaN NaN 185999.3 NaN 11183 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14466 64.098 NaN 664760 35 0 99097 0.261 + 23454 RLPSETYFF 9 77 580.2926199930132 1158.5706870528263 2 580.2927856445312 MULTI HCD FTMS 0 0 0 14463 221743 0.2794011900125884 8 -0.22925567626953125 3 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 47.748688679222035 0.03472022231463587 2 [R{I|L}][PS]{[ET]|[MV]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 55.072 0 0 4.7534 4.7534 90.955 0 0 0 13.873949984654246 30.005989037811887 13.873949984654246 43.95024331273362 0 1.9247425010840047 1.3979400086720375 0.7742275032520141 0 + + [R{I|L}][PS]{[ET]|[MV]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F};[R{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[HG]|PP} 4.7534;0.95994 +;- + 130 NaN NaN 194236.8 NaN 11184 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14467 64.101 NaN 653770 35 0 65132 0.261 + 5215 FFDAELSQM 9 84 552.2394798963711 NaN 0 552.239501953125 PEAK HCD FTMS 0 0 0 14463 146589.71875 0.596468645752603 1 -0.0294189453125 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 72.96794272382148 0.005289789941973842 2 AE{I|L}SQ 5 4 52.722 0 0 4.7822 0 0 409.1618688730171 162.02303491763908 571.1849037906562 0 0 0 0 0 2.6747425010840047 0 0.3054621874040891 0.2742275032520141 + AE{I|L}SQ 4.7822 + + 258 + NaN NaN 202350.5 NaN 11185 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14468 64.105 NaN 562050 35 0 129360 0.262 -1 ACGNDDCR 8 57 455.66011287028095 NaN 0 455.6598815917969 PEAK HCD FTMS 0 0 0 14463 65161.734375 0.3559355580420583 -14 0.4179801940917969 5 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 4.3292370932331545 0.38822285293237185 2 C 1 -1 3.9794 0 0 0.43763 0 0 671.2245398501339 132.0458162897094 803.2703561398432 0 0 0 0 0 0 0 0 0 C 0.43763 + + 9 + NaN NaN 174680 NaN 11186 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14469 64.108 NaN 521260 35 0 100950 0.261 + 7625 FYIKSSGLDLI 11 51 419.2362693340092 1254.6869786022276 3 419.2366638183594 MULTI HCD FTMS 0 0 0 14463 90102.671875 0.6817054567447165 2 -0.055572509765625 6 Unmodified _FYIKSSGLDLI_ REV__ENSG00000187554|ENST00000642603|TLR5 12.855947597645695 0.34506811884481176 2 {I|L}{I|L} 2 -1 29.776 0 0 2.3732 0 0 1010.5096968883803 0 1010.5096968883803 0 16.281446971601312 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L} 2.3732 + + 18 NaN NaN 176857.4 NaN 11187 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14470 64.111 NaN 256790 35 0 24349 0.261 + 16842 LYEGLWPELF 10 60 633.8212880538553 1265.6280231745104 2 633.8208618164062 MULTI HCD FTMS 0 0 0 14463 44217.515625 0.5610455961399778 1 -0.0294189453125 7 Unmodified _LYEGLWPELF_ REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF 19.256988751693697 0.33098864134661865 2 {I|L}{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9329 0 0 987.4720326154312 0 987.4720326154312 0 17.47425010840047 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9329 + + 21 NaN NaN 136957.8 NaN 11188 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14471 64.115 NaN 245980 35 0 21257 0.261 -1 MDASDSMRII 10 51 577.7609937013439 1153.5074344694876 2 577.76123046875 MULTI HCD FTMS 0 0 0 14463 56004.90625 0.7177863757296513 2 -0.055572509765625 8 Oxidation (M) _MDASDSM(Oxidation (M))RII_ tr|U7T144|U7T144_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00890PE=3SV=1 2.9952420565917617 0.4594494122822477 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8179 0 0 875.3415673058771 0 875.3415673058771 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8179 - 11 NaN NaN 140531.6 NaN 11189 3280 14463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14473 64.12 NaN 5357000 35 0 304710 0.327 + 27194 SYNNFFRMF 9 134 621.2740136938751 1240.53347445455 2 621.2742919921875 MULTI HCD FTMS 0 0 0 14472 3944841.25 0.8234110397459492 -2 0.062255859375 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 193.2943466776899 1.661812519250559E-13 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE 8 2 114.12 0 0 9.199 0 0 0 180.04584680728752 180.04584680728752 72.73829082372671 0 0 0 0 2.7104093769761874 2 1.2951140161145327 1.0044321917401078 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RE 9.199 - 16470 + NaN NaN 736814.3 NaN 11190 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14474 64.124 NaN 793810 35 0 111320 0.261 + 11854 KFAEEFYSF 9 75 584.2714072380124 1166.5282615428248 2 584.2717895507812 MULTI HCD FTMS 0 0 0 14472 458718.59375 0.430887565870429 2 -0.055694580078125 2 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 157.7952019732125 5.857147217999733E-07 2 EAEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 8 2 100.72 0 0 8.6346 0 0 146.10788916943073 0 146.10788916943073 0 72.27674928914496 0 0 0 3.305462187404089 0 2.3169015600442577 0 EAEE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 8.6346 - 911 + NaN NaN 227215.6 NaN 11191 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14475 64.128 NaN 925620 35 0 110200 0.261 + 5807 FPAYERVLL 9 96 554.313250982957 1106.611949032714 2 554.3133544921875 MULTI HCD FTMS 0 0 0 14472 398566.90625 0.4804903629858488 -5 0.14735794067382812 3 Unmodified _FPAYERVLL_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 59.368380827593164 0.01846506874148156 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L} 9 0 + 75.869 0 0 6.8559 6.8559 91.837 0 0 0 10.607887415777526 46.35074580863147 10.607887415777526 13.324120262636342 0 2.3807196863200843 1.6989700043360187 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L};{M(Oxidation (M))|F}PAYERV{I|L}{I|L};[PA]{M(Oxidation (M))|F}YERV{I|L}{I|L};[Y{M(Oxidation (M))|F}][PA]ERV{I|L}{I|L} 6.8559;5.6519;4.4377;2.1323 +;+;-;- + 858 NaN NaN 246267.5 NaN 11192 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14476 64.131 NaN 470650 35 0 27066 0.261 -1 WRMAKGFVM 9 91 571.2878509836182 1140.5611490340364 2 571.77099609375 MULTI HCD FTMS 0 0 0 14472 23140.029296875 0.4828227945824649 12 -0.3408203125 4 Oxidation (M) _WRMAKGFVM(Oxidation (M))_ ENSG00000145569|ENST00000274217|OTULINL;ENST00000513825.1_1_5:14601096-14602296:+|nuORF 26.88365393820708 0.12808753336095696 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{M(Oxidation (M))|F}S[VP][VG][KS] 11 -1 + 50.366 0 0 4.4159 4.4159 88.823 0 0 0 5.761004751920687 29.084176325409917 5.761004751920687 18.503804559769495 0 1.8494850021680094 1.6989700043360187 0.6421590589602533 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{M(Oxidation (M))|F}S[VP][VG][KS];[{M(Oxidation (M))|F}E]V[{I|L}P]S{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PT[KA]{M(Oxidation (M))|F}GV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PYKRT{[DS]|[MA]|[CV]|TT};[YG]T[VG]K[RD]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PYKP{M(Oxidation (M))|F}[KS];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PT[KA]{M(Oxidation (M))|F}T{[DS]|[MA]|[CV]|TT};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PYK[VG]GV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PYKPSK{M(Oxidation (M))|F};[YT][RD]KP{M(Oxidation (M))|F}[KS] 4.4159;2.7936;1.9135;1.8247;1.7161;1.4758;1.4748;1.4562;1.4098;1.2128 -;-;-;-;-;-;-;-;-;- 1063 NaN NaN 178872.6 NaN 11193 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14477 64.134 NaN 377880 35 0 26651 0.261 + 18141 MPDFDVARI 9 72 532.2659198836175 1062.5172868340348 2 532.7667846679688 MULTI HCD FTMS 0 0 0 14472 48602.98046875 0.47007515996143395 -5 0.14735794067382812 5 Unmodified _MPDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 28.494509381512117 0.11816142465008336 2 MPD{M(Oxidation (M))|F}DVA[R{I|L}] 9 0 + 58.58 0 0 5.5133 5.5133 92.531 0 0 0 21.585390679490075 3.2568864632742844 3.2568864632742844 58.58017516893504 0 1.1747425010840047 0 0 0 + + MPD{M(Oxidation (M))|F}DVA[R{I|L}] 5.5133 + + 193 + NaN NaN 152311 NaN 11194 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14478 64.138 NaN 249580 35 0 32029 0.261 + 5317 FFLCWMPI 8 66 528.7555656344965 NaN 0 528.7560424804688 PEAK HCD FTMS 0 0 0 14472 43199.41796875 0.5022838161621551 3 -0.08843994140625 6 Unmodified _FFLCWMPI_ ENSG00000163394|ENST00000295589|CCKAR 6.354104778181461 0.38822285293237185 2 WQ 2 7 10.886 0 0 1.0313 0 0 359.1825047047367 379.1613863580688 738.3438910628055 0 0 0 0 0 0.3807196863200844 0 0 0 WQ 1.0313 - 56 + NaN NaN 127659.8 NaN 11195 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14479 64.141 NaN 115140 35 0 6122.3 0.261 + 146 AEGDLVRLL 9 48 493.286865234375 NaN 0 493.286865234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _AEGDLVRLL_ ENSG00000100365|ENST00000248899|NCF4 26.268140514670165 0.145325121643443 2 {I|L}V 2 7 19.464 0 0 1.9769 0 0 372.1270704084 397.2548006647094 769.3818710731094 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L}V 1.9769 + + 8 + NaN NaN 105074 NaN 11196 3281 14472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14481 64.146 NaN 1116100 35 0 295260 0.327 + -1 KMEEVYAI 8 80 499.7467790357058 997.4790051382116 2 499.7469787597656 MULTI HCD FTMS 0 0 0 14480 589783.4375 0.9853132332197962 1 -0.029541015625 1 Oxidation (M) _KM(Oxidation (M))EEVYAI_ REV__ENSG00000107897|ENST00000396271|ACBD5;REV__ENST00000476758.1_1_10:27509331-27520733:-|nuORF;REV__nc|ENSG00000107897|Q5T8D3-2|ACBD5;REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5;REV__nc|ENSG00000107897|Q5T8D3|ACBD5 57.47134341890925 0.0815142710316295 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}GYA{I|L} 9 -1 + 64.662 0 0 6.4826 6.4826 90.852 0 0 0 18.47681848658212 36.91045212875714 18.47681848658212 12.129843661361406 0 0.9247425010840047 1.5228787452803376 1.1307196863200843 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}GYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YS[TP]A{I|L};{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}GYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}GYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}YS[TP]A{I|L};EA{[TV]|[{I|L}S]}SY{I|L}C{I|L} 6.4826;5.2665;4.3791;4.3791;3.1631;1.8658 -;-;-;-;-;- 408 NaN NaN 260035.8 NaN 11197 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14482 64.15 NaN 304950 35 0 22778 0.261 + 27660 TALFVEHVL 9 63 514.7926130132719 1027.5706730933437 2 514.7924194335938 MULTI HCD FTMS 0 0 0 14480 135076.3125 0.28867936285188717 8 -0.22605133056640625 2 Unmodified _TALFVEHVL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 56.17704186161178 0.022929533404884107 2 [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L} 9 0 + 62.273 0 0 6.0602 6.0602 89.543 0 0 0 2.429928190999391 2.429928190999391 2.429928190999391 9.771212547196626 0 2.6677353201839438 0 0.2742275032520141 0 + + [TA]{I|L}{M(Oxidation (M))|F}VEHV{I|L};[TA]{M(Oxidation (M))|F}{I|L}VEHV{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}[PG]{I|L};[TA]{M(Oxidation (M))|F}{I|L}V[NP][PG]{I|L};[TA]{I|L}{M(Oxidation (M))|F}V[NP][PG]{I|L};[TA]{I|L}[NP]V{M(Oxidation (M))|F}{I|L}[PG];[TA]{M(Oxidation (M))|F}{I|L}V[NP]{I|L}[PG];[TA]{I|L}{M(Oxidation (M))|F}V[NP]{I|L}[PG];[TA]{I|L}[NP]V{I|L}[PG]{M(Oxidation (M))|F};[TA]{I|L}[NP]P{[CT]|[{M(Oxidation (M))|F}G]}V{I|L} 6.0602;5.1093;4.2003;4.05;4.0277;4.0066;3.8563;3.8341;3.7831;2.7628 +;-;-;-;-;-;-;-;-;- + 275 NaN NaN 139489.1 NaN 11198 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14483 64.154 NaN 361510 35 0 76681 0.262 + 7542 FYAERFFKF 9 50 418.8816390486482 1253.6230877461446 3 418.8817138671875 MULTI HCD FTMS 0 0 0 14480 97037.3359375 0.9362767213163194 1 -0.029541015625 3 Unmodified _FYAERFFKF_ ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 10.799506525563784 0.2670509983294061 2 YE 2 7 22.206 0 0 1.7714 0 0 943.4907349312549 0 943.4907349312549 0 8.711375162600703 0 0 0 0.4247425010840047 0 0 0 YE 1.7714 - 13 NaN NaN 153117.7 NaN 11199 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14484 64.157 NaN 175770 35 0 18464 0.261 + 31493 VYFPDQHINF 10 39 640.3087516903796 1278.6029504475591 2 640.810546875 MULTI HCD FTMS 0 0 0 14480 83273.6015625 1 0 0 4 Unmodified _VYFPDQHINF_ ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B 15.248480904072842 0.3684828712757339 2 [YV]{M(Oxidation (M))|F} 3 7 37.447 0 0 2.9288 0 0 0 866.3802268809284 866.3802268809284 16.478174818886373 0 0 0 0 1 1.6989700043360187 0 0 + [YV]{M(Oxidation (M))|F} 2.9288 + + 9 NaN NaN 117485.7 NaN 11200 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14485 64.16 NaN 202540 35 0 56704 0.264 -1 0 49 454.66246108605617 907.3103692389124 2 454.6625671386719 MULTI HCD FTMS 0 0 0 14480 56863.109375 0.3174034976632386 13 -0.3670501708984375 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.7066 0 0 742.2315251000437 0 742.2315251000437 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7066 - 6 + NaN NaN 114157.9 NaN 11201 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14486 64.164 NaN 219450 35 0 11836 0.261 -1 SFHRNCSI 8 60 510.7378450060908 1019.4611370789817 2 510.73773193359375 MULTI HCD FTMS 0 0 0 14480 32677.291015625 0.32208367381889114 10 -0.27179718017578125 6 Carbamidomethyl (C) _SFHRNC(Carbamidomethyl (C))SI_ ENST00000368468.3_1_6:119500260-119500521:-|nuORF 15.847184025352803 0.47719562709667024 2 YA{I|L} 3 -1 33.5 0 0 3.286 0 0 654.2623768537125 0 654.2623768537125 0 15.417796943586875 0 0 0 0.7302046884880937 0 0 0 YA{I|L} 3.286 - 165 NaN NaN 120152.1 NaN 11202 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14487 64.167 NaN 246660 35 0 25203 0.261 + 25455 SEYYRPEI 8 63 528.7545942192569 NaN 0 528.7553100585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _SEYYRPEI_ REV__ENSG00000164929|ENST00000309982|BAALC;REV__nc|ENSG00000164929|Q8WXS3-1|BAALC;REV__nc|ENSG00000164929|Q8WXS3-3|BAALC;REV__nc|ENSG00000164929|Q8WXS3-4|BAALC;REV__nc|ENSG00000164929|Q8WXS3-5|BAALC;REV__nc|ENSG00000164929|Q8WXS3-6|BAALC 7.910154910731844 0.38822285293237185 2 WQ 2 -1 10.217 0 0 0.96794 0 0 359.1779983976949 379.1617830865844 738.3397814842793 0 0 0 0 0 0.4247425010840047 0 0 0 WQ 0.96794 - 31 + NaN NaN 127437.7 NaN 11203 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14488 64.17 NaN 309510 35 0 30403 0.261 + 10762 ISDLHVPVL 9 78 496.79245748067217 991.5703620281444 2 496.7929992675781 MULTI HCD FTMS 0 0 0 14480 45025.56640625 0.26413221568631945 6 -0.17368316650390625 8 Unmodified _ISDLHVPVL_ REV__ENSG00000169413|ENST00000304677|RNASE6 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 28.901 0 0 2.9147 0 0 82.16023001685956 0 82.16023001685956 0 0.6639311543577975 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9147 - 179 + NaN NaN 138522.4 NaN 11204 3282 14480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14490 64.175 NaN 4218200 35 0 1130200 0.327 + 24703 RYLTVAAVF 9 89 520.3003137195551 1038.5860745059101 2 520.300537109375 MULTI HCD FTMS 0 0 0 14489 1763056.25 0.04703029438584503 16 -0.431732177734375 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 69.10491478415734 0.009377850133389008 2 VAPTVAAV{M(Oxidation (M))|F} 9 3 59.065 0 0 5.687 0 0 165.07935043181118 0 165.07935043181118 0 49.61085577954421 0 0 0 1.024227503252014 0 1.1989700043360187 0 VAPTVAAV{M(Oxidation (M))|F} 5.687 - 343 + NaN NaN 734666.4 NaN 11205 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14491 64.18 NaN 1895900 35 0 670650 0.261 + 23224 RFVNVVPTF 9 69 539.805853942585 1077.59715495197 2 539.8062133789062 MULTI HCD FTMS 0 0 0 14489 652131.875 0.8903163038456924 1 -0.032745361328125 2 Unmodified _RFVNVVPTF_ ENSG00000149806|ENST00000529639|FAU 49.93300154707207 0.03166451819912738 2 VPT{M(Oxidation (M))|F} 4 5 52.467 0 0 4.8689 0 0 615.3495632787054 0 615.3495632787054 0 21.665090889956673 0 0 0 1.8807196863200843 0 0.7742275032520141 0 + VPT{M(Oxidation (M))|F} 4.8689 + + 106 + NaN NaN 388912.8 NaN 11206 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14492 64.183 NaN 1588300 35 0 194200 0.261 + 34316 YPDTDVILM 9 103 541.7573407412204 1081.5001285492408 2 541.757568359375 MULTI HCD FTMS 0 0 0 14489 597973 0.768821282203981 4 -0.11798858642578125 3 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 70.71552829651908 0.008856681705782516 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ES]|[DT]|[{I|L}C]}V{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 55.758 0 0 5.1556 5.1556 88.572 0 0 0 1.3775609662632462 29.314382231515225 1.3775609662632462 11.840353690627786 0 1.8807196863200843 0 1.0629529932484498 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{[ES]|[DT]|[{I|L}C]}V{I|L}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}DD[DV]V{I|L}{I|L}{M(Oxidation (M))|F};DD{M(Oxidation (M))|F}[DV]V{I|L}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}DD[DV]V{M(Oxidation (M))|F}{I|L}{I|L};DD{M(Oxidation (M))|F}[DV]V{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}][{I|L}T][DV]{M(Oxidation (M))|F}[DP] 5.1556;4.0608;3.6368;0.75611;0.33206;0.19039 +;-;-;-;-;- + 1879 NaN NaN 335202.2 NaN 11207 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14493 64.187 NaN 1007900 35 0 173410 0.261 + 25226 SAQIELDSL 9 72 488.2532897412744 974.4920265493488 2 488.25335693359375 MULTI HCD FTMS 0 0 0 14489 568584.25 1 0 0 4 Unmodified _SAQIELDSL_ REV__ENSG00000162086|ENST00000669516|ZNF75A;REV__nc|ENSG00000162086|Q96N20|ZNF75A 96.11092074494114 0.00436583732602279 2 {[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L} 9 -1 + 82.626 0 0 8.4789 8.4789 89.542 0 0 0 13.791133717273425 16.47817481888636 13.791133717273425 3.333558811666677 0 1.3252574989159953 1.2218487496163564 1.8505762035186217 0.6307196863200843 {[TV]|[{I|L}S]}[QA]E{I|L}DS{I|L};{[TV]|[{I|L}S]}D{[NV]|[RG]}{I|L}DS{I|L};{[TV]|[{I|L}S]}D{I|L}{[NV]|[RG]}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[CA]|SS}[KP]E{I|L}DS{I|L};{[TV]|[{I|L}S]}D{I|L}E[QA]S{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[TV]|[{I|L}S]}[PG]{[CA]|SS}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};{[TV]|[{I|L}S]}[QA]ES{NN|[MP]|[D{I|L}]|[EV]}{I|L} 8.4789;8.1368;7.7461;7.0637;6.9974;6.8017;6.673;5.9294;5.7286;4.5213 -;-;-;-;-;-;-;-;-;- 311 NaN NaN 236552.9 NaN 11208 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14494 64.19 NaN 416920 35 0 29982 0.262 + 4634 EYMEHVYLI 9 77 598.7862434157602 1195.5579338983202 2 599.2883911132812 MULTI HCD FTMS 0 0 0 14489 156600.109375 0.715545870003689 -3 0.085113525390625 5 Unmodified _EYMEHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 44.40701690623563 0.04511410083598184 2 YY[WE]{M(Oxidation (M))|F}Y{I|L}{I|L} 8 4 + 55.494 0 0 4.6417 4.6417 91.122 0 0 0 26.325095025625806 33.18803992210768 26.325095025625806 55.49404509383326 0 0.9247425010840047 2 1.3807196863200843 0 YY[WE]{M(Oxidation (M))|F}Y{I|L}{I|L} 4.6417 - 162 NaN NaN 144830.8 NaN 11209 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14495 64.193 NaN 175030 35 0 25341 0.261 + -1 CNPCPVPGFFI 11 46 625.7882297221196 1249.561906511039 2 625.7883911132812 MULTI HCD FTMS 0 0 0 14489 55791.06640625 0.465077187926897 6 -0.173675537109375 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))NPCPVPGFFI_ REV__ENSG00000187545|ENST00000235347|PRAMEF10 3.2813086475875832 0.40452996145431686 2 KS 2 -1 17.959 0 0 1.4372 0 0 647.3318782901391 384.06891809635005 1031.4007963864892 0 0 0 0 0 1 0 0 0 KS 1.4372 - 7 + NaN NaN 120641.8 NaN 11210 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14496 64.196 NaN 210890 35 0 9088.2 0.261 -1 LYLEHCISL 9 60 574.2924892403327 1146.5704255474652 2 574.2921142578125 MULTI HCD FTMS 0 0 0 14489 25666.5859375 0.6473111741523422 1 -0.032745361328125 7 Carbamidomethyl (C) _LYLEHC(Carbamidomethyl (C))ISL_ ENSG00000133980|ENST00000256362|VRTN 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F}{I|L} 2 -1 20.969 0 0 1.8289 0 0 868.4315193841335 0 868.4315193841335 0 14.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.8289 - 23 NaN NaN 115997.7 NaN 11211 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14497 64.2 NaN 253050 35 0 17612 0.261 + 17354 LYQDGVFKF 9 77 558.7894911798255 1115.564429426451 2 558.7901611328125 MULTI HCD FTMS 0 0 0 14489 12607.6455078125 0.060604074361710995 9 -0.24225616455078125 8 Unmodified _LYQDGVFKF_ ENSG00000166971|ENST00000394657|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF;nc|ENSG00000166971|Q9H8T0-2|AKTIP 27.628801355627647 0.12213550946336599 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V 8 6 30.099 0 0 2.6981 0 0 0 161.0505493817822 161.0505493817822 12.791681396005998 0 0 0 0 0 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V 2.6981 - 169 NaN NaN 132484.6 NaN 11212 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14498 64.203 NaN 109860 35 0 13028 0.261 + 11047 IYFKKPLNIYF 11 43 482.61141968556217 NaN 0 482.6117248535156 PEAK HCD FTMS 0 0 0 14489 22638.71484375 0.6101360615047144 1 -0.032745361328125 9 Unmodified _IYFKKPLNIYF_ ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-1|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 12.855947597645695 0.30565152245264504 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107452.3 NaN 11213 3283 14489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14500 64.208 NaN 1203000 35 0 163580 0.327 + 29098 TYGEIFEKF 9 102 567.2792195549672 1132.5438861767343 2 567.2793579101562 MULTI HCD FTMS 0 0 0 14499 750511.5625 0.03569508083705458 46 -1.2196578979492188 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 110.5527297667825 0.0028521687250969148 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 67.446 0 0 5.9553 5.9553 86.748 0 0 0 15.315832792587102 6.909626605709164 6.909626605709164 6.909626605709164 0 2.2179001828205482 1.5228787452803376 0.8945990182825423 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};[YT][YV][PS]EK{M(Oxidation (M))|F};[YT][TP][{M(Oxidation (M))|F}T]EK{M(Oxidation (M))|F};[YT]G{I|L}EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}[{M(Oxidation (M))|F}T]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};[YT][TP]{[ET]|[MV]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}{[ET]|[MV]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 5.9553;5.3452;4.6029;4.4926;4.4542;4.4315;4.1604;3.8214;3.6648;3.3326 -;-;-;-;-;-;-;-;-;- 1435 NaN NaN 273138 NaN 11214 3284 14499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14501 64.212 NaN 1025700 35 0 526130 0.263 -1 0 53 427.30262838993985 852.5907038466797 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14499 547140.75 0.20126306988294523 5 -0.14093017578125 2 NaN NaN 2 {I|L}{I|L} 2 -1 4.9485 0 0 0.58041 0 0 486.32788375741274 137.0830477350219 623.4109314924347 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.58041 - 12 + NaN NaN 240083.4 NaN 11215 3284 14499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14502 64.216 NaN 907100 35 0 85450 0.261 + 21860 QAVQVDVEL 9 71 500.7691286614422 999.5237043896844 2 500.7693176269531 MULTI HCD FTMS 0 0 0 14499 172264.65625 0.12173692415516198 6 -0.16376495361328125 3 Unmodified _QAVQVDVEL_ ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 79.59630418116434 0.005983006570063981 2 QVDVE{I|L} 6 3 69.391 0 0 6.9424 0 0 298.1642323224625 0 298.1642323224625 0 42.435464932947724 0 0 0 2.055462187404089 0 0.7302046884880937 1.055462187404089 + QVDVE{I|L} 6.9424 + + 331 NaN NaN 219811.7 NaN 11216 3284 14499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14503 64.219 NaN 1349100 35 0 79601 0.261 + 34921 YSLEKKAKE 9 111 548.3067022408832 NaN 0 548.2899169921875 PEAK HCD FTMS 0 0 0 14499 9678.8056640625 0.2741760248732844 3 -0.08524322509765625 4 Unmodified _YSLEKKAKE_ REV__tr|U7SUV6|U7SUV6_FUSNUCobalaminbiosynthesisproteinCobDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobDPE=3SV=1 10.823927491677226 0.2427956001690155 2 QSTAC[VG]T 8 -1 20.805 0 0 1.9007 0 0 132.19287957521402 212.06759058170158 344.26047015691563 0 0 0 0 0 0 0 2.2658715643802765 0 QSTAC[VG]T 1.9007 - 926 + NaN NaN 286709.8 NaN 11217 3284 14499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14504 64.223 NaN 520590 35 0 32700 0.262 + 17171 LYLTKGCHWRP 11 91 458.5758939655159 1372.7058524967476 3 458.9105224609375 MULTI HCD FTMS 0 0 0 14499 55415.02734375 0.45228037349686984 -2 0.062286376953125 5 Unmodified _LYLTKGCHWRP_ REV__ENST00000514558.5_1_4:159133187-159133286:+|nuORF 7.477065608646677 0.3861287967437539 2 [Y{I|L}]{M(Oxidation (M))|F}[HK]{I|L}Y{I|L}SD 10 -1 52.923 0 0 3.8554 0 0 0 90.03514986675773 90.03514986675773 42.1265249738142 0 0 0 0 1.274227503252014 1.3010299956639813 0.805462187404089 0.3252574989159953 [Y{I|L}]{M(Oxidation (M))|F}[HK]{I|L}Y{I|L}SD 3.8554 - 307 NaN NaN 165457.3 NaN 11218 3284 14499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14505 64.226 NaN 419980 35 0 36316 0.261 + 21567 PYMAKFVVF 9 87 559.2909766375227 1116.5674003418453 2 559.2914428710938 MULTI HCD FTMS 0 0 0 14499 129760.28125 0.3408775242496835 -7 0.20961380004882812 6 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 67.34385681178166 0.00994769994983633 2 PY{M(Oxidation (M))|F} 3 6 41.995 0 0 3.7611 0 0 0 706.3933343270753 706.3933343270753 8.807196863200843 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 + PY{M(Oxidation (M))|F} 3.7611 + + 273 + NaN NaN 147948.3 NaN 11219 3284 14499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14507 64.231 NaN 1365900 35 0 447810 0.327 + 10805 ISTICAPDVL 10 62 516.2759101782298 1030.5372674232594 2 516.7612915039062 MULTI HCD FTMS 0 0 0 14506 47895.46484375 0.33307958276354227 9 -0.24575042724609375 1 Unmodified _ISTICAPDVL_ REV__ENSG00000130669|ENST00000360442|PAK4;REV__nc|ENSG00000130669|O96013-2|PAK4;REV__nc|ENSG00000130669|O96013-3|PAK4;REV__nc|ENSG00000130669|O96013-4|PAK4 13.90604991867851 0.3810395177745597 2 H{I|L}AVE{[QG]|[NA]}{I|L} 8 -1 34.418 0 0 3.3398 0 0 165.0790272443375 0 165.0790272443375 0 13.782672239435314 0 0 0 0 0 0.3807196863200844 0 H{I|L}AVE{[QG]|[NA]}{I|L} 3.3398 - 181 NaN NaN 298353.4 NaN 11220 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14508 64.235 NaN 1599900 35 0 220510 0.261 -1 0 75 596.9667455343069 1787.8784072031208 3 597.3008422851562 MULTI HCD FTMS 0 0 0 14506 303741.625 0.6008564047124266 -1 0.022857666015625 2 NaN NaN 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 35.005 0 0 1.9579 0 0 1312.6664561938949 0 1312.6664561938949 0 9.343246711440187 0 0 0 0.8807196863200843 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9579 - 267 NaN NaN 332477.3 NaN 11221 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14509 64.239 NaN 1693500 35 0 82566 0.261 + 12566 KTCACQISQL 10 118 547.7703847787689 1093.5262166243376 2 547.75927734375 MULTI HCD FTMS 0 0 0 14506 59502.27734375 0.08961864560345116 46 -1.2129898071289062 3 Unmodified _KTCACQISQL_ ENST00000224140.5_1_9:135201753-135201831:-|nuORF 21.536976647645854 0.3096624038397699 2 NTA[DN]{I|L}TN 8 7 36.407 0 0 3.3293 0 0 232.1421833722672 0 232.1421833722672 0 12.0217596488785 0 0 0 0 0 0.3252574989159953 0.7059771852360797 NTA[DN]{I|L}TN 3.3293 - 4050 NaN NaN 353521.9 NaN 11222 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14510 64.242 NaN 316680 35 0 28676 0.261 + 23455 RLPSETYFF 9 65 580.2926199930132 1158.5706870528263 2 580.292724609375 MULTI HCD FTMS 0 0 0 14506 71170.8125 0.08967683176768963 13 -0.3437957763671875 4 Unmodified _RLPSETYFF_ ENSG00000257315|ENST00000550078|ZBED6 24.020572477871973 0.15282392193088168 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 37.307 0 0 3.2201 0 0 683.3627186505875 0 683.3627186505875 0 20.31743128760553 0 0 0 1.2614393726401687 0 0 0 + Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2201 + + 53 NaN NaN 133528.5 NaN 11223 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14511 64.246 NaN 309250 35 0 26907 0.261 -1 PYMDSPQSIGF 11 76 629.2771095555245 1256.5396661778489 2 629.27685546875 MULTI HCD FTMS 0 0 0 14506 73434.2421875 0.5160260084254316 6 -0.1736907958984375 5 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 21.590151480376914 0.2689667140516965 2 S{I|L}G{M(Oxidation (M))|F} 4 -1 41.459 0 0 3.2994 0 0 834.3257313459 0 834.3257313459 0 20.69599075987611 0 0 0 0.805462187404089 0 0.9247425010840047 0 S{I|L}G{M(Oxidation (M))|F} 3.2994 + + 209 NaN NaN 131316.9 NaN 11224 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14512 64.249 NaN 214140 35 0 39556 0.261 + 18714 MYPYIYHVL 9 48 607.8000505230617 1213.5855481129233 2 607.800048828125 MULTI HCD FTMS 0 0 0 14506 67657.3359375 0.4688728639691714 7 -0.18665313720703125 6 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 45.7499826716795 0.03894913563566938 2 Y[HV]{I|L} 4 5 23.94 0 0 1.9727 0 0 683.3029041974625 0 683.3029041974625 0 10.740312677277187 0 0 0 0.9247425010840047 0 0 0 + Y[HV]{I|L} 1.9727 + + 23 NaN NaN 119646.7 NaN 11225 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14513 64.252 NaN 397440 35 0 26285 0.261 + -1 VTRKKMCL 8 67 526.2926028896594 NaN 0 526.2825927734375 PEAK HCD FTMS 0 0 0 14506 7831.79052734375 0.4700915018443159 -1 0.022857666015625 7 Carbamidomethyl (C),Oxidation (M) _VTRKKM(Oxidation (M))C(Carbamidomethyl (C))L_ REV__ENST00000423106.2_1_2:174063392-174063449:-|nuORF 12.531546534597751 0.38822285293237185 2 SWV 3 -1 15.93 0 0 1.5163 0 0 131.1112364979054 544.2522872076994 675.3635237056048 0 0 0 0 0 0 0 0.4247425010840047 0 SWV 1.5163 - 205 + NaN NaN 146482 NaN 11226 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14514 64.255 NaN 108360 35 0 9365.1 0.261 + 10305 ILERNCEI 8 47 495.2578258807499 988.5010988282999 2 495.36260986328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ILERNCEI_ ENSG00000203963|ENST00000684719|C1orf141 7.910154910731844 0.5302565402355366 2 {I|L}{I|L}C{M(Oxidation (M))|F} 4 5 16.198 0 0 1.6386 0 0 0 509.2724971039437 509.2724971039437 0.7133375178436552 0 0 0 0 0 0 0 0 {I|L}{I|L}C{M(Oxidation (M))|F} 1.6386 - 13 NaN NaN 103495.1 NaN 11227 3285 14506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14516 64.26 NaN 5873800 35 0 327780 0.327 + 27195 SYNNFFRMF 9 135 621.2740136938751 1240.53347445455 2 621.2744140625 MULTI HCD FTMS 0 0 0 14515 4435496 0.9258259437306885 3 -0.08856201171875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 193.2943466776899 1.661812519250559E-13 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 114.77 0 0 9.2513 0 0 0 208.03620325260002 208.03620325260002 73.17765268393023 0 0 0 0 2.765871564380277 2 1.1496498648046138 0.9604093769761877 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.2513 - 19070 + NaN NaN 810925.6 NaN 11228 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14517 64.265 NaN 657070 35 0 46985 0.261 + 13339 KYMDVQFDF 9 71 604.7680784656989 1207.5216039981976 2 604.7684936523438 MULTI HCD FTMS 0 0 0 14515 306909.90625 0.1328248613152396 34 -0.9025192260742188 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 57.24910588100465 0.021429789259086996 2 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 5 59.06 0 0 4.891 0 0 262.09495742011876 0 262.09495742011876 0 30.657747828043284 0 0 0 1.3807196863200843 0 0 0.7742275032520141 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.891 - 1074 NaN NaN 190621.8 NaN 11229 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14518 64.268 NaN 567430 35 0 39999 0.261 + 936 AYDTVRWEF 9 70 593.7801551949964 1185.5457574567927 2 593.7803955078125 MULTI HCD FTMS 0 0 0 14515 296875.6875 0.1532963413443987 14 -0.376129150390625 3 Unmodified _AYDTVRWEF_ ENSG00000176978|ENST00000371579|DPP7;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF 63.227496030279354 0.01306643085373406 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F} 9 0 + 99.078 0 0 8.3572 8.3572 92.564 0 0 0 25.642492736872597 93.59366274865181 25.642492736872597 9.208187539523749 0 2.4247425010840047 2 0.9247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTV[VG]WE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[R{I|L}]SWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DTVR[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[RE]|[WV]}VSWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[R{I|L}]S{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[CA]|SS}VRWE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[RE]|[WV]}VS{[DA]|[EG]}E{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[RE]|[WV]}W[VS]E{M(Oxidation (M))|F} 8.3572;7.5805;7.178;6.0817;5.7939;5.406;4.9025;4.7529;4.6293;4.3322 +;-;-;-;-;-;-;-;-;- + 652 NaN NaN 173068.6 NaN 11230 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14519 64.272 NaN 560830 35 0 52648 0.261 + 20410 NYYKVNWTF 9 82 617.7984254077761 1233.5822978823521 2 617.7984008789062 MULTI HCD FTMS 0 0 0 14515 247438.578125 1 0 0 4 Unmodified _NYYKVNWTF_ ENST00000518345.1_1_8:109254078-109254135:-|nuORF 74.19965305603844 0.007729275404663812 2 [YN]YKVNWT{M(Oxidation (M))|F} 9 0 + 67.008 0 0 5.432 5.432 88.252 0 0 0 46.038487161950755 12.262036441594198 12.262036441594198 9.208187539523756 0 2.524227503252014 2 0.3252574989159953 0.3494850021680094 + + [YN]YKVNWT{M(Oxidation (M))|F};[YN]YKVGGWT{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}AA[KS]WT{M(Oxidation (M))|F};[YN]Y[YQ]K{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[WT]|[RM]}HAAVK{[CA]|SS}T{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}M[RH]NWT{M(Oxidation (M))|F};{[WT]|[RM]}HAAVHHE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}M[RH]GGWT{M(Oxidation (M))|F} 5.432;4.6855;4.0693;3.3539;2.3104;0.99293;0.72696;0.24647 +;-;-;-;-;-;-;- + 457 + NaN NaN 188805.2 NaN 11231 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14520 64.275 NaN 218330 35 0 40916 0.264 + -1 CMMPSGPD 8 41 455.66011287028095 NaN 0 455.65985107421875 PEAK HCD FTMS 0 0 0 14515 117704.046875 0.642939541282916 -8 0.225860595703125 5 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))MM(Oxidation (M))PSGPD_ REV__ENSG00000103023|ENST00000567164|PRSS54 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112102.8 NaN 11232 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14521 64.278 NaN 206630 35 0 36071 0.261 + 25613 SGFLELSGLQ 10 48 525.7765402445341 NaN 0 525.7586669921875 PEAK HCD FTMS 0 0 0 14515 7709.015625 0.7843720806006116 -1 0.029510498046875 6 Unmodified _SGFLELSGLQ_ ACAN|p.D1983E|1|0.43|ENSG00000157766|chr15:88858534-88858534|C/A|missense_variant 9.38312468134398 0.33215363477037435 2 SVSV 4 8 13.197 0 0 1.2574 0 0 130.09255695215558 544.2514132135374 674.343970165693 0 0 0 0 0 0 0 0 0 SVSV 1.2574 - 72 + NaN NaN 113927.9 NaN 11233 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14522 64.282 NaN 181850 35 0 17081 0.261 -1 0 52 633.2910790729431 632.2838026063431 1 633.2915649414062 MULTI HCD FTMS 0 0 0 14515 69497.0703125 1 0 0 7 NaN NaN 2 VV 2 -1 13.979 0 0 2.2109 0 0 0 431.1243990533813 431.1243990533813 5.0269751594335315 0 0 0 0 0 0 0 0 VV 2.2109 - 5 + NaN NaN 124434.4 NaN 11234 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14523 64.285 NaN 114150 35 0 29494 0.264 + 22019 QFSEAFSLLNF 11 41 434.88225543735075 NaN 0 434.8824157714844 PEAK HCD FTMS 0 0 0 14515 49962.62109375 0.43133400739225597 18 -0.47089385986328125 8 Unmodified _QFSEAFSLLNF_ REV__ENSG00000175267|ENST00000389398|VWA3A;REV__nc|ENSG00000175267|A6NCI4-2|VWA3A;REV__nc|ENSG00000175267|A6NCI4-3|VWA3A;REV__nc|ENSG00000175267|A6NCI4-4|VWA3A 1.214830529360525 0.33867401910978034 2 T 1 -1 4.6041 0 0 0.53058 0 0 227.43319876357026 536.2365816705686 763.6697804341388 0 0 0 0 0 0 0 0 0 T 0.53058 - 1 + NaN NaN 110289.4 NaN 11235 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14524 64.288 NaN 276030 35 0 58692 0.261 + 11664 IYVPRGAV 8 64 437.7608244829045 873.5070960326091 2 437.7607727050781 MULTI HCD FTMS 0 0 0 14515 22681.849609375 0.02942174414120248 19 -0.5037307739257812 9 Unmodified _IYVPRGAV_ REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF 23.1484247019978 0.4234759064137959 2 {I|L}Y 2 -1 35.177 0 0 4.0271 0 0 0 594.3386934869749 594.3386934869749 12.323937598229683 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}Y 4.0271 + + 69 + NaN NaN 128460.3 NaN 11236 3286 14515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14526 64.293 NaN 992200 35 0 126560 0.327 + 5808 FPAYERVLL 9 83 554.313250982957 1106.611949032714 2 554.3135375976562 MULTI HCD FTMS 0 0 0 14525 432879.15625 0.5218553263052568 1 -0.026153564453125 1 Unmodified _FPAYERVLL_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 59.368380827593164 0.01846506874148156 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L} 9 0 + 79.121 0 0 7.1499 7.1499 92.99 0 0 0 14.41508427897837 38.50588706572886 14.41508427897837 16.409328277719766 0 2.3807196863200843 1.6989700043360187 0.3252574989159953 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AYERV{I|L}{I|L};{M(Oxidation (M))|F}PAYERV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SE{M(Oxidation (M))|F}RV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SER{M(Oxidation (M))|F}V{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SERV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SERV{I|L}{M(Oxidation (M))|F}{I|L};[PA]{M(Oxidation (M))|F}YERV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PE{M(Oxidation (M))|F}RV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PER{M(Oxidation (M))|F}V{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PERV{M(Oxidation (M))|F}{I|L}{I|L} 7.1499;5.667;4.9771;4.7257;4.7257;4.3817;4.1656;3.2246;2.9732;2.9732 +;+;-;-;-;-;-;-;-;- + 599 NaN NaN 243269.1 NaN 11237 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14527 64.298 NaN 476810 35 0 48175 0.261 + 11855 KFAEEFYSF 9 62 584.2714072380124 1166.5282615428248 2 584.271728515625 MULTI HCD FTMS 0 0 0 14525 158297.21875 0.14869312951464883 8 -0.21952056884765625 2 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 70.33199760932243 0.0089807860198535 2 [Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 9 3 + 79.147 0 0 6.7848 6.7848 86.832 0 0 0 3.7371250542002343 9.396512253176823 3.7371250542002343 3.7371250542002343 0 2.4247425010840047 1.5228787452803376 0.3807196863200844 0 [Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[PA][VS]YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{M(Oxidation (M))|F}VV[DG]S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[PA][VS]YS{M(Oxidation (M))|F};[{I|L}T]{[QD]|[EN]|[WG]|[KD]|[RS]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}VV[DG]S{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[TA]{M(Oxidation (M))|F}E[KP][MT];{[QD]|[EN]|[WG]|[KD]|[RS]}[TA]{M(Oxidation (M))|F}E[Q{I|L}]{[ES]|[DT]|[{I|L}C]} 6.7848;6.4645;5.5001;3.8294;2.9918;2.865;2.1781;2.0274;2.0269;1.9438 -;-;-;-;-;-;-;-;-;- 344 NaN NaN 164433 NaN 11238 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14528 64.301 NaN 351880 35 0 40167 0.261 + 18142 MPDFDVARI 9 66 532.2659198836175 1062.5172868340348 2 532.26611328125 MULTI HCD FTMS 0 0 0 14525 109310.078125 0.7743967215150794 1 -0.026153564453125 3 Unmodified _MPDFDVARI_ ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF;nc|ENSG00000181222|P24928|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant 37.07464296494664 0.07877380486334713 2 MPD{M(Oxidation (M))|F}DVAR{I|L} 9 0 + 74.659 0 0 7.0266 7.0266 93.694 0 0 0 37.039106406846045 7.900217704352457 7.900217704352457 25.669015600442577 0 2.004432191740108 0 0 0 + + MPD{M(Oxidation (M))|F}DVAR{I|L};{I|L}DD{M(Oxidation (M))|F}{[RE]|[WV]}R{I|L};{I|L}DDMRVVC{I|L} 7.0266;4.6107;2.4226 +;-;- + 192 + NaN NaN 135008.4 NaN 11239 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14529 64.305 NaN 281110 35 0 20926 0.261 -1 VIGYNLMQAM 10 67 586.2777181212572 NaN 0 586.2926635742188 PEAK HCD FTMS 0 0 0 14525 10495.720703125 0.874932401580242 -1 0.03287506103515625 4 2 Oxidation (M) _VIGYNLM(Oxidation (M))QAM(Oxidation (M))_ ENSG00000179002|ENST00000375371|TAS1R2 7.289230182591677 0.3339457182549222 2 {I|L}Y[C(Carbamidomethyl (C))H]R 5 -1 10.758 0 0 0.91903 0 0 165.04969724496033 273.12409387760005 438.1737911225604 0 0 0 0 0 0 0 0 0.3054621874040891 {I|L}Y[C(Carbamidomethyl (C))H]R 0.91903 - 27 + NaN NaN 150033.9 NaN 11240 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14530 64.308 NaN 358730 35 0 20130 0.261 + 1289 AYMPHTFFI 9 85 571.770448645615 1141.52634435803 2 572.2718505859375 MULTI HCD FTMS 0 0 0 14525 39426.421875 0.06552029840781445 27 -0.71661376953125 5 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 42.09456458481378 0.05572955244001856 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[TA]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 3 + 49.899 0 0 4.3713 4.3713 86.818 0 0 0 8.401209935633176 27.47643172295369 8.401209935633176 9.279032320494807 0 1.4247425010840047 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[TA]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[Y{I|L}]{[YC]|[HE]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[MT]Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]E{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[Y{I|L}]{[{M(Oxidation (M))|F}C]|[YS]}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[Y{I|L}]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y;[YT][RD][KP]{M(Oxidation (M))|F}C{I|L};[YT]{M(Oxidation (M))|F}D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KP]{I|L} 4.3713;3.5584;3.3209;3.2523;3.0321;2.2917;2.1661;0.49618 -;-;-;-;-;-;-;- 722 NaN NaN 143825.3 NaN 11241 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14531 64.311 NaN 207540 35 0 54027 0.262 + 3402 EEYAMTVV 8 41 471.21783557728725 940.4211182213745 2 471.2174377441406 MULTI HCD FTMS 0 0 0 14525 43540.24609375 0.27721555512534896 -7 0.20310211181640625 6 Unmodified _EEYAMTVV_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 9.347437153973935 0.5250182646323369 2 VV 2 -1 25.969 0 0 2.7614 0 0 724.2727033003903 0 724.2727033003903 0 15.511525224473813 0 0 0 0.5 0 0 0 VV 2.7614 + + 21 NaN NaN 124940.2 NaN 11242 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14532 64.315 NaN 218460 35 0 15070 0.261 + -1 LCCDMLEL 8 66 527.2247713852294 1052.4349898372586 2 527.2250366210938 MULTI HCD FTMS 0 0 0 14525 11037.2958984375 0.08342564227358448 8 -0.21952056884765625 7 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))C(Carbamidomethyl (C))DMLEL_ REV__ENSG00000112237|ENST00000520429|CCNC;REV__nc|ENSG00000112237|P24863-2|CCNC 8.593279151180031 0.5292430274356741 2 E{I|L} 2 -1 20.005 0 0 1.9008 0 0 792.2972818433607 0 792.2972818433607 0 10.541134294324124 0 0 0 0.3807196863200844 0 0 0 E{I|L} 1.9008 + + 38 NaN NaN 116979.4 NaN 11243 3287 14525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14534 64.319 NaN 2798100 35 0 708620 0.327 + 24704 RYLTVAAVF 9 74 520.3003137195551 1038.5860745059101 2 520.300537109375 MULTI HCD FTMS 0 0 0 14533 1375335.875 0.036687684287250485 21 -0.5594863891601562 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 51.629811660486645 0.02929079705179888 2 VAAV{M(Oxidation (M))|F} 5 4 52.541 0 0 5.0588 0 0 533.2961292951187 0 533.2961292951187 0 45.55080679321012 0 0 0 1.8807196863200843 0 0 0 + VAAV{M(Oxidation (M))|F} 5.0588 + + 188 NaN NaN 510711 NaN 11244 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14535 64.324 NaN 717270 35 0 97321 0.261 + 34317 YPDTDVILM 9 79 541.7573407412204 1081.5001285492408 2 541.757568359375 MULTI HCD FTMS 0 0 0 14533 290257.78125 0.3731880194428639 9 -0.2357177734375 2 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 63.562846038646086 0.012597299157545023 2 TNS[KP]V{I|L}{I|L}{M(Oxidation (M))|F} 9 5 53.567 0 0 4.953 0 0 63.99030230821865 0 63.99030230821865 0 30.890625187447966 0 0 0 1.4247425010840047 0 0.4247425010840047 0 TNS[KP]V{I|L}{I|L}{M(Oxidation (M))|F} 4.953 - 725 + NaN NaN 198253.2 NaN 11245 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14536 64.327 NaN 1213600 35 0 61834 0.261 + 12567 KTCACQISQL 10 112 547.7706645917034 NaN 0 547.7597045898438 PEAK HCD FTMS 0 0 0 14533 17209.291015625 0.3009786225296606 -3 0.08853912353515625 3 Unmodified _KTCACQISQL_ ENST00000224140.5_1_9:135201753-135201831:-|nuORF 21.536976647645854 0.26818477760186155 2 EC[DP]ATN 7 9 31.22 0 0 2.855 0 0 131.1198127682589 229.1190127008422 360.23882546910113 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 1.1421590589602533 EC[DP]ATN 2.855 - 1020 + NaN NaN 265786.8 NaN 11246 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14537 64.331 NaN 433900 35 0 63517 0.261 -1 YNAPTDHGLCI 11 65 630.7877674140175 1259.5609818948349 2 630.787841796875 MULTI HCD FTMS 0 0 0 14533 144777.875 0.28568896767803825 -3 0.08853912353515625 4 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 26.268140514670165 0.22820724222159966 2 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 83.409 0 0 6.6221 0 0 0 265.1305330865844 265.1305330865844 64.82570335676726 0 0 0 0 2.6237125054200234 2 0.3807196863200844 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.6221 - 227 + NaN NaN 154953.8 NaN 11247 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14538 64.334 NaN 347960 35 0 26032 0.262 + 22224 QLYWGGKSL 9 80 526.2817979800001 1050.5490430268 2 526.2822265625 MULTI HCD FTMS 0 0 0 14533 89473.546875 0.02748469962820945 42 -1.1082611083984375 5 Unmodified _QLYWGGKSL_ ENST00000482281.6_1_12:111073707-111073935:+|nuORF 29.081581746732265 0.1154664336125038 2 VSVS{I|L} 5 7 46.938 0 0 4.468 0 0 547.2736038558683 0 547.2736038558683 0 34.987737688117235 0 0 0 0.9247425010840047 0 0.4247425010840047 0 VSVS{I|L} 4.468 - 598 NaN NaN 151605.3 NaN 11248 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14539 64.337 NaN 158900 35 0 8088.3 0.261 + 3092 EAINVEQAF 9 51 510.75249487634426 1019.4904368194885 2 510.7379150390625 MULTI HCD FTMS 0 0 0 14533 9082.9052734375 0.4079724265250954 -1 0.026153564453125 6 Unmodified _EAINVEQAF_ ENSG00000075785|ENST00000265062|RAB7A 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F} 1 8 17.659 0 0 1.7321 0 0 854.4116689745651 0 854.4116689745651 0 6.689615513722202 0 0 0 0.3054621874040891 0 0 0 + {M(Oxidation (M))|F} 1.7321 + + 26 + NaN NaN 112415.5 NaN 11249 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14540 64.341 NaN 229020 35 0 18511 0.262 + 23475 RLVLGAGF 8 60 416.75497801416793 NaN 0 416.7550048828125 PEAK HCD FTMS 0 0 0 14533 31407.666015625 0.30882950215087746 2 -0.0523681640625 7 Unmodified _RLVLGAGF_ ENST00000529503.5_1_8:145137494-145138312:+|nuORF 2.8892196856762586 0.38822285293237185 2 H 1 8 3.4949 0 0 0.42031 0 0 529.3584534875172 162.0559481256469 691.414401613164 0 0 0 0 0 0 0 0 0 H 0.42031 - 9 + NaN NaN 115484.6 NaN 11250 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14541 64.344 NaN 167960 35 0 11883 0.261 + -1 PMAEELNL 8 63 466.7231313880867 931.4317098429734 2 466.72320556640625 MULTI HCD FTMS 0 0 0 14533 25492.896484375 0.4799814823204628 9 -0.2357177734375 8 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 16.942295170755138 0.46913822049235215 2 {I|L}N{I|L} 3 -1 32.747 0 0 3.5158 0 0 573.209276267775 0 573.209276267775 0 18.767959391884546 0 0 0 0.2742275032520141 0 0 0.3807196863200844 {I|L}N{I|L} 3.5158 + + 81 NaN NaN 110009.3 NaN 11251 3288 14533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14543 64.349 NaN 1476600 35 0 181360 0.327 + 29099 TYGEIFEKF 9 105 567.2792195549672 1132.5438861767343 2 567.279541015625 MULTI HCD FTMS 0 0 0 14542 814800.125 0.03875270919349384 51 -1.310455322265625 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 121.5340881639634 0.001118397630175091 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 72.463 0 0 6.3982 6.3982 87.89 0 0 0 16.011683478327512 8.028871982441359 8.028871982441359 8.028871982441359 0 2.254432191740108 1.6989700043360187 1.086696871556164 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};[YT]GE[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}{[ET]|[MV]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YT][TP]{[ET]|[MV]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[KC]T[KT]K{M(Oxidation (M))|F};[RH]E[C(Carbamidomethyl (C))K]EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}AT[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 6.3982;5.6893;4.9844;4.2755;3.8742;3.5951;3.5673;3.4154;2.8332;2.8067 -;-;-;-;-;-;-;-;-;- 2269 NaN NaN 316486.6 NaN 11252 3289 14542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14544 64.353 NaN 491970 35 0 141790 0.261 -1 TAMDVVYAL 9 49 499.7467790357058 997.4790051382116 2 499.74700927734375 MULTI HCD FTMS 0 0 0 14542 228218.015625 0.38126915161885117 8 -0.20618438720703125 2 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 28.486842064014134 0.11819662193267319 2 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.215303509864 0 533.215303509864 0 43.0866814795592 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 55 NaN NaN 159025.5 NaN 11253 3289 14542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14545 64.357 NaN 226800 35 0 36922 0.261 + 25337 SDLVNLESV 9 50 488.2532897412744 974.4920265493488 2 488.2533874511719 MULTI HCD FTMS 0 0 0 14542 206914.640625 0.3639120158973802 6 -0.1638336181640625 3 Unmodified _SDLVNLESV_ REV__ENSG00000212916|ENST00000418460|MAP10 43.85829265575387 0.04763305254408404 2 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L} 9 -1 + 61.22 0 0 6.2823 6.2823 87.422 0 0 0 15.03469351593509 34.75440627993265 15.03469351593509 7.302046884880937 0 1.4247425010840047 0 1.110924374808178 0 {[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}{I|L}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}{[NV]|[RG]}DS{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{I|L}E[QA]S{I|L};{[DS]|[MA]|[CV]|TT}{I|L}{[NV]|[RG]}S{NN|[MP]|[D{I|L}]|[EV]}{I|L} 6.2823;5.533;4.2751;2.7154 -;-;-;- 88 NaN NaN 126503.6 NaN 11254 3289 14542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14546 64.36 NaN 110500 35 0 5862.9 0.261 -1 MCLFLYQHH 9 44 624.7867383142152 1247.5589236952303 2 624.80419921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _MC(Carbamidomethyl (C))LFLYQHH_ L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|138|3|anti-sense 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}QEE 4 -1 10.802 0 0 0.86585 0 0 696.324022361525 0 696.324022361525 0 9.692737604564034 0 0 0 0 0 0 0 {M(Oxidation (M))|F}QEE 0.86585 - 19 NaN NaN 105227.9 NaN 11255 3289 14542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14547 64.364 NaN 147090 35 0 9471.7 0.261 + 21750 QAEPLKTCEE 10 52 574.2688858494805 1146.523218765761 2 574.2686157226562 MULTI HCD FTMS 0 0 0 14542 40314.0234375 0.06922882061837568 54 -1.388946533203125 5 Unmodified _QAEPLKTCEE_ REV__ENSG00000102606|ENST00000646102|ARHGEF7;REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF;REV__nc|ENSG00000102606|Q14155-1|ARHGEF7;REV__nc|ENSG00000102606|Q14155-2|ARHGEF7;REV__nc|ENSG00000102606|Q14155-3|ARHGEF7;REV__nc|ENSG00000102606|Q14155-5|ARHGEF7;REV__nc|ENSG00000102606|Q14155-6|ARHGEF7;REV__nc|ENSG00000102606|Q14155|ARHGEF7 2.735195868890462 0.4608258780945842 2 SW 2 -1 19.464 0 0 1.6976 0 0 855.4016194999391 0 855.4016194999391 0 6.7609125905568135 0 0 0 0 0 0 0 SW 1.6976 - 26 + NaN NaN 115156.6 NaN 11256 3289 14542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14548 64.367 NaN 94404 35 0 18021 0.261 -1 MFTMCGFNLF 10 48 642.2664700800225 1282.5183872268449 2 642.2666015625 MULTI HCD FTMS 0 0 0 14542 8769.1611328125 0.26066668114230934 1 -0.02283477783203125 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))FTMC(Carbamidomethyl (C))GFNLF_ ENSG00000145428|ENST00000347063|RNF175;ENST00000503694.5_1_4:154636517-154669813:-|nuORF;nc|ENSG00000145428|Q8N4F7-2|RNF175 1.4819007175156935 0.4674597685733628 2 W 1 -1 6.9897 0 0 0.545 0 0 347.08486779500737 746.3286837213499 1093.4135515163573 0 0 0 0 0 0 0 0 0 W 0.545 - 4 + NaN NaN 109602 NaN 11257 3289 14542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14550 64.372 NaN 746120 35 0 387630 0.327 -1 0 63 427.30262838993985 852.5907038466797 2 427.3026123046875 MULTI HCD FTMS 0 0 0 14549 279718 0.10289290896632662 11 -0.30092620849609375 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5364 0 0 687.5112340974595 0 687.5112340974595 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5364 - 10 + NaN NaN 202899.9 NaN 11258 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14551 64.376 NaN 1830000 35 0 244000 0.261 -1 0 81 596.9667455343069 1787.8784072031208 3 597.3011474609375 MULTI HCD FTMS 0 0 0 14549 242219.734375 0.4791548696921651 4 -0.1048431396484375 2 NaN NaN 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 35.445 0 0 1.9825 0 0 1312.6675985094741 0 1312.6675985094741 0 10.039237471316298 0 0 0 0.9247425010840047 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9825 - 156 NaN NaN 372810.9 NaN 11259 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14552 64.38 NaN 1577900 35 0 85408 0.261 + 12568 KTCACQISQL 10 123 547.7706645917034 NaN 0 547.7599487304688 PEAK HCD FTMS 0 0 0 14549 34270.25390625 0.5993630885246695 -1 0.02283477783203125 3 Unmodified _KTCACQISQL_ ENST00000224140.5_1_9:135201753-135201831:-|nuORF 18.1463463914782 0.29565035219289926 2 QS[DN]ATN 7 10 37.222 0 0 3.4038 0 0 131.11921914033604 229.1193026178344 360.23852175817046 0 0 0 0 0 0 0 1.4698565171985374 0.3807196863200844 QS[DN]ATN 3.4038 - 1086 + NaN NaN 348432.7 NaN 11260 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14553 64.383 NaN 1050900 35 0 348960 0.261 + 110 ADLFLGHIF 9 69 516.7772636749492 NaN 0 516.7611694335938 PEAK HCD FTMS 0 0 0 14549 5957.900390625 0.14279494416736385 -3 0.078521728515625 4 Unmodified _ADLFLGHIF_ REV__DNAH7|p.G3932A|1|0.12|ENSG00000118997|chr2:195740839-195740839|C/G|missense_variant 9.347437153973935 0.2499504662953367 2 PEVA{I|L}H 6 -1 24.87 0 0 2.411 0 0 220.11785099965692 162.05588709049064 382.1737380901476 0 0 0 0 0 0 0 0 0 PEVA{I|L}H 2.411 - 227 + NaN NaN 242149.9 NaN 11261 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14554 64.386 NaN 764070 35 0 76705 0.261 + 21568 PYMAKFVVF 9 88 559.2909766375227 1116.5674003418453 2 559.2911987304688 MULTI HCD FTMS 0 0 0 14549 287168.625 0.7543859260260795 -1 0.02283477783203125 5 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 81.61307344734483 0.005330412723537057 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F} 9 2 + 91.014 0 0 8.1512 8.1512 88.923 0 0 0 24.63899138491874 51.18846328063972 24.63899138491874 3.0102999566398125 0 2.305462187404089 1.6989700043360187 0.28872548999643577 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KV{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}VVK{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]K{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][EC]KV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.1512;7.8816;7.7807;7.1642;6.8946;6.7937;5.6536;4.2798;4.0102;3.9093 -;+;-;-;-;-;-;-;-;- + 1136 NaN NaN 208784.1 NaN 11262 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14555 64.39 NaN 516470 35 0 53303 0.261 + 21861 QAVQVDVEL 9 55 500.7691286614422 999.5237043896844 2 500.769287109375 MULTI HCD FTMS 0 0 0 14549 102602.2265625 0.07250749947837781 12 -0.31711578369140625 6 Unmodified _QAVQVDVEL_ ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2 99.75527289724121 0.004270341300239591 2 QVDVE{I|L} 6 3 71.565 0 0 7.1599 0 0 298.1639881818375 0 298.1639881818375 0 62.10077508221467 0 0 0 2.1549471895720984 0 1.0484550065040281 0.7302046884880937 + QVDVE{I|L} 7.1599 + + 232 NaN NaN 166022.8 NaN 11263 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14556 64.393 NaN 172780 35 0 11954 0.261 + -1 MDLHFYEIL 9 61 598.7862434157602 1195.5579338983202 2 599.2880249023438 MULTI HCD FTMS 0 0 0 14549 37935.6328125 0.17333758892823764 4 -0.1048431396484375 7 Oxidation (M) _M(Oxidation (M))DLHFYEIL_ REV__ENSG00000205268|ENST00000401827|PDE7A;REV__ENST00000518667.1_1_8:66643803-66660021:-|nuORF;REV__nc|ENSG00000205268|Q13946-2|PDE7A;REV__nc|ENSG00000205268|Q13946-3|PDE7A 16.942295170755138 0.21397866736869717 2 {I|L}{I|L} 2 -1 17.563 0 0 1.469 0 0 951.379426776818 0 951.379426776818 0 10.573193899842437 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.469 + + 14 NaN NaN 106218.7 NaN 11264 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14557 64.396 NaN 225040 35 0 29687 0.262 + 16658 LWGLHCVAL 9 52 506.27661957842884 1010.5386862236577 2 506.2765808105469 MULTI HCD FTMS 0 0 0 14549 48203.3515625 0.555762386664864 -4 0.11139678955078125 8 Unmodified _LWGLHCVAL_ REV__ENST00000273221.8_2_3:12940565-12940730:-|nuORF 9.347437153973935 0.2795965555214564 2 VA{I|L} 3 -1 28.188 0 0 2.7894 0 0 709.3380604474625 0 709.3380604474625 0 21.197887582883936 0 0 0 0.5 0 0 0 VA{I|L} 2.7894 + + 25 NaN NaN 120705.4 NaN 11265 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14558 64.4 NaN 236160 35 0 18726 0.262 + 12015 KHAPIAVP 8 51 416.75497801416793 NaN 0 416.75482177734375 PEAK HCD FTMS 0 0 0 14549 7210.6298828125 0.07090164661695607 4 -0.1048431396484375 9 Unmodified _KHAPIAVP_ REV__ENSG00000011566|ENST00000263881|MAP4K3;REV__ENST00000495648.3_1_2:39499422-39505556:-|nuORF;REV__nc|ENSG00000011566|Q8IVH8-2|MAP4K3;REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3 0.7936320650641473 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.6596 0 0 565.3536403076117 116.05024896793202 681.4038892755437 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.6596 - 4 + NaN NaN 118191.2 NaN 11266 3290 14549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14560 64.405 NaN 3041600 35 0 137140 0.327 + 27196 SYNNFFRMF 9 124 621.2740136938751 1240.53347445455 2 621.2742919921875 MULTI HCD FTMS 0 0 0 14559 1661791.25 0.346867509815058 8 -0.2024383544921875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 152.88595553498965 5.775426743015152E-06 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 105.99 0 0 8.5437 8.5437 92.828 0 0 0 78.3711044724993 0.632478725879551 0.632478725879551 9.208187539523749 0 2.754432191740108 2 0 0.9269359821608809 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];[YG]GSN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]R{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGN[MT] 8.5437;7.8014;7.8014;7.3249;7.0626;6.5826;6.3894;5.7917;5.4125;5.0529 +;-;-;+;-;-;-;-;-;- + 6184 + NaN NaN 547070.5 NaN 11267 3291 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14561 64.409 NaN 233500 35 0 16375 0.262 + 30636 VPDHVVWSL 9 68 526.2817979800001 1050.5490430268 2 526.2817993164062 MULTI HCD FTMS 0 0 0 14559 46747.14453125 0.014359900448709023 45 -1.1534576416015625 2 Unmodified _VPDHVVWSL_ ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000185885|ENST00000408968|IFITM1;ENST00000505282.1_1_4:66959972-66960239:+|nuORF 43.85829265575387 0.04763305254408404 2 VSVS{I|L} 5 5 49.68 0 0 4.729 0 0 547.2751332013687 0 547.2751332013687 0 33.738350322034236 0 0 0 1 0 0.9247425010840047 0 VSVS{I|L} 4.729 - 348 NaN NaN 119027 NaN 11268 3291 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14562 64.413 NaN 151330 35 0 7291.2 0.261 -1 0 53 625.5903053602947 NaN 0 625.59130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 S 1 -1 6.9897 0 0 0.55955 0 0 386.694025171958 772.4162691705686 1159.1102943425267 0 0 0 0 0 0 0 0 0 S 0.55955 - 15 + NaN NaN 116768.6 NaN 11269 3291 14559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14564 64.418 NaN 591580 35 0 64879 0.327 + 5809 FPAYERVLL 9 71 554.313250982957 1106.611949032714 2 554.3134155273438 MULTI HCD FTMS 0 0 0 14563 180347.203125 0.21741667894187802 6 -0.15714263916015625 1 Unmodified _FPAYERVLL_ ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 41.95555342248728 0.056367691549927025 2 {I|L}MAYE 5 6 60.662 0 0 5.4818 0 0 0 496.3238619440063 496.3238619440063 33.21456278567766 0 0 0 0 0.9247425010840047 1.6989700043360187 0.4247425010840047 0 {I|L}MAYE 5.4818 - 153 + NaN NaN 181781.5 NaN 11270 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14565 64.422 NaN 587150 35 0 85757 0.261 + -1 DLILCMEEM 9 84 585.2478289105235 1168.4811048878469 2 585.248291015625 MULTI HCD FTMS 0 0 0 14563 230877.09375 0.6560002479068872 1 -0.04286956787109375 2 Carbamidomethyl (C),Oxidation (M) _DLILC(Carbamidomethyl (C))M(Oxidation (M))EEM_ REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF 10.823927491677226 0.26684000660059787 2 {I|L}V{I|L}DE 5 -1 66.599 0 0 5.6996 0 0 0 596.1552218072874 596.1552218072874 40.29545237941676 0 0 0 0 1.25 1.6989700043360187 0.6139829889124311 0 {I|L}V{I|L}DE 5.6996 - 363 + NaN NaN 179980.3 NaN 11271 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14566 64.426 NaN 576660 35 0 36529 0.461 + 5046 FDNLSRQAEE 10 67 604.7820336753335 NaN 0 604.7683715820312 PEAK HCD FTMS 0 0 0 14563 10509.8203125 0.4344653488033735 -1 0.01296234130859375 3 Unmodified _FDNLSRQAEE_ REV__ENSG00000197616|ENST00000405093|MYH6 8.745405648335112 0.33269943387702366 2 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F} 6 -1 27.612 0 0 2.2866 0 0 165.10757980169484 277.0825289361938 442.19010873788864 0 0 0 0 0 0 0 0 0.4247425010840047 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F} 2.2866 - 183 + NaN NaN 192256.8 NaN 11272 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14567 64.432 NaN 438800 35 0 102640 0.261 + 24421 RYLADLPTL 9 56 531.303000853278 1060.591448773356 2 531.3031616210938 MULTI HCD FTMS 0 0 0 14563 130872.2578125 0.39823376107908015 -2 0.045745849609375 4 Unmodified _RYLADLPTL_ ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 49.55428908609986 0.03219431099695407 2 AD{I|L}PT{I|L} 6 3 53.365 0 0 5.0316 0 0 432.24864394355626 0 432.24864394355626 0 26.197887582883936 0 0 0 1.274227503252014 0 0.4247425010840047 0 + AD{I|L}PT{I|L} 5.0316 + + 95 NaN NaN 155024.9 NaN 11273 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14568 64.436 NaN 506500 35 0 29170 0.261 -1 SFSEVRSCSQ 10 96 593.7606293137467 NaN 0 593.7803344726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _SFSEVRSC(Carbamidomethyl (C))SQ_ ENST00000434735.6_1_12:109915511-109921459:+|nuORF;ENST00000540230.5_1_12:109915511-109921459:+|nuORF 13.042465956692817 0.3290217458104555 2 SDTVRW 6 -1 25.368 0 0 2.1398 0 0 147.01148406645217 291.0980623834594 438.1095464499116 0 0 0 0 0 0 0 0.8252574989159953 0 SDTVRW 2.1398 - 682 + NaN NaN 172057.1 NaN 11274 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14569 64.439 NaN 451660 35 0 73289 0.261 + 20411 NYYKVNWTF 9 67 617.7984254077761 1233.5822978823521 2 617.7982177734375 MULTI HCD FTMS 0 0 0 14563 96227.9921875 0.38889648055966414 6 -0.15714263916015625 6 Unmodified _NYYKVNWTF_ ENST00000518345.1_1_8:109254078-109254135:-|nuORF 47.594388314883695 0.03493607795751234 2 [YN]YK{[NV]|[RG]}WT{M(Oxidation (M))|F} 9 0 + 45.005 0 0 3.6483 3.6483 88.64 0 0 0 11.672356950594676 8.90814710730578 8.90814710730578 26.12589001354399 0 2.06295299324845 2 0.3494850021680094 0 + + [YN]YK{[NV]|[RG]}WT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[WP]QQWT{M(Oxidation (M))|F} 3.6483;1.5304 +;- + 151 + NaN NaN 159585.9 NaN 11275 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14570 64.442 NaN 420170 35 0 72449 0.264 + -1 CMMPSGPD 8 49 455.66011287028095 NaN 0 455.66046142578125 PEAK HCD FTMS 0 0 0 14563 81458.28125 0.44495284037420446 -2 0.045745849609375 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))MM(Oxidation (M))PSGPD_ REV__ENSG00000103023|ENST00000567164|PRSS54 2.577480529830294 0.38822285293237185 2 M 1 -1 5.4846 0 0 0.60316 0 0 595.1970757275124 180.04270349674064 775.239779224253 0 0 0 0 0 0 0 0 0 M 0.60316 + + 3 + NaN NaN 162327.4 NaN 11276 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14571 64.446 NaN 346490 35 0 54976 0.261 + -1 LFCETIMFTL 10 66 637.8116367822427 1273.6087206312852 2 637.81201171875 MULTI HCD FTMS 0 0 0 14563 60042.15625 0.4175846172470459 -2 0.045745849609375 8 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))ETIMFTL_ REV__ENSG00000279961|ENST00000623286|OR8U3 24.020572477871973 0.2864316864133941 2 {M(Oxidation (M))|F}T{I|L} 3 -1 37.435 0 0 2.9393 0 0 894.4006702514637 0 894.4006702514637 0 22.74227503252014 0 0 0 0.9247425010840047 0 0.5 0 {M(Oxidation (M))|F}T{I|L} 2.9393 + + 400 NaN NaN 138602.5 NaN 11277 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14572 64.449 NaN 324380 35 0 25109 0.261 + 22948 QYVLGATNFF 10 69 580.2926199930132 1158.5706870528263 2 580.2923583984375 MULTI HCD FTMS 0 0 0 14563 78923.9140625 0.0994459149083117 20 -0.539947509765625 9 Unmodified _QYVLGATNFF_ REV__ENSG00000101425|ENST00000642449|BPI;REV__nc|ENSG00000101425|P17213|BPI 12.240655878213236 0.39661705172222156 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 34.693 0 0 2.9944 0 0 683.358690330275 0 683.358690330275 0 11.391981519752221 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9944 - 144 NaN NaN 131148.1 NaN 11278 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14573 64.452 NaN 422890 35 0 70058 0.261 + 18715 MYPYIYHVL 9 59 607.798955348531 1213.5833577638618 2 608.3019409179688 MULTI HCD FTMS 0 0 0 14563 46276.5625 0.3723120841902753 -14 0.38300323486328125 10 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 67.41302359171755 0.009925318700911543 2 [Y{M(Oxidation (M))|F}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YHV{I|L} 9 0 + 45.908 0 0 3.7828 3.7828 89.784 0 0 0 1.6896596111422113 38.43326954115149 1.6896596111422113 45.90751964955196 0 1.8494850021680094 0 0 0 + + [Y{M(Oxidation (M))|F}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YHV{I|L} 3.7828 + + 64 NaN NaN 142252.1 NaN 11279 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14574 64.455 NaN 190290 35 0 7511.5 0.261 + 6278 FPFHFVDRL 9 72 589.3109313602337 1176.6073097872672 2 589.31103515625 MULTI HCD FTMS 0 0 0 14563 21110.5078125 0.31009298503336535 -2 0.045745849609375 11 Unmodified _FPFHFVDRL_ ENSG00000135972|ENST00000258455|MRPS9;ENST00000472220.1_1_2:105708813-105716216:+|nuORF;SIK3-MRPS9|1|fusion 23.789781309258295 0.1548179064208189 2 {I|L}M{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 5 6 48.438 0 0 4.1168 0 0 0 498.2691744440063 498.2691744440063 27.469209759735698 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 {I|L}M{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 4.1168 - 157 + NaN NaN 121723.8 NaN 11280 3292 14563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14576 64.46 NaN 380000 35 0 28774 0.327 -1 PFYTRAATMI 10 88 593.7989319033193 1185.5833108734384 2 595.2896728515625 MULTI HCD FTMS 0 0 0 14575 21873.013671875 0.664646136969183 -3 0.08861541748046875 1 Oxidation (M) _PFYTRAATM(Oxidation (M))I_ ENSG00000133639|ENST00000256015|BTG1 17.11289562659939 0.35104376501799556 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VYP 8 -1 42.396 0 0 3.5759 0 0 0 141.06641216992458 141.06641216992458 11.901056208558032 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VYP 3.5759 - 545 NaN NaN 155748.7 NaN 11281 3293 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14577 64.465 NaN 170050 35 0 9345.4 0.261 + -1 FEWDQMVIL 9 59 598.7862434157602 1195.5579338983202 2 599.2880249023438 MULTI HCD FTMS 0 0 0 14575 57362.1171875 0.2621021544109841 7 -0.176116943359375 2 Oxidation (M) _FEWDQM(Oxidation (M))VIL_ REV__ENSG00000139173|ENST00000266534|TMEM117 19.256988751693697 0.19398022840297344 2 {I|L}{I|L} 2 -1 20.573 0 0 1.7208 0 0 951.3802357404312 0 951.3802357404312 0 8.010299956639813 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.7208 + + 16 NaN NaN 131220.7 NaN 11282 3293 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14578 64.468 NaN 150490 35 0 12360 0.262 + 32986 YARRRVSL 8 52 510.8075060390248 NaN 0 510.79730224609375 PEAK HCD FTMS 0 0 0 14575 14118.05078125 1 0 0 3 Unmodified _YARRRVSL_ ENSG00000117148|ENST00000375406|ACTL8 8.593279151180031 0.38822285293237185 2 C{I|L} 2 7 10.969 0 0 1.0758 0 0 131.11305056734915 669.3719576471311 800.4850082144803 0 0 0 0 0 0 0 0 0 C{I|L} 1.0758 - 8 + NaN NaN 102901.3 NaN 11283 3293 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14579 64.472 NaN 309620 35 0 10652 0.261 + 33550 YIKIAKNCNL 10 78 590.3340515614556 NaN 0 590.3356323242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YIKIAKNCNL_ REV__ENSG00000139865|ENST00000553443|TTC6;REV__nc|ENSG00000139865|Q86TZ1-2|TTC6 14.838274106304384 0.3224471714378502 2 H{M(Oxidation (M))|F}QK 4 -1 11.019 0 0 0.93484 0 0 393.2393789024048 242.11445032291252 635.3538292253173 0 0 0 0 0 0.3807196863200844 0 0 0.3054621874040891 H{M(Oxidation (M))|F}QK 0.93484 - 230 + NaN NaN 147294.6 NaN 11284 3293 14575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14581 64.477 NaN 3725700 35 0 872590 0.327 + 24705 RYLTVAAVF 9 86 520.3003137195551 1038.5860745059101 2 520.300537109375 MULTI HCD FTMS 0 0 0 14580 1645303.375 0.04388918508996771 27 -0.6934814453125 1 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 51.629811660486645 0.02929079705179888 2 [Y{I|L}]RTVAAV{M(Oxidation (M))|F} 9 2 + 63.527 0 0 6.1167 6.1167 91.257 0 0 0 0.03469351593508918 49.06349996614132 0.03469351593508918 17.028937514676485 0 2.0752574989159953 0 0.8494850021680094 0 [Y{I|L}]RTVAAV{M(Oxidation (M))|F};[Y{I|L}]RTVAG{I|L}{M(Oxidation (M))|F};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}[HV]PAV{M(Oxidation (M))|F};[Y{I|L}]RTVQ{I|L}{M(Oxidation (M))|F};[Y{I|L}]RT[Q{I|L}]V{M(Oxidation (M))|F};[Y{I|L}]RTVAG{M(Oxidation (M))|F}{I|L};{[VA]|[{I|L}G]}{[TV]|[{I|L}S]}[HV]PG{I|L}{M(Oxidation (M))|F};[Y{I|L}]RTVQ{M(Oxidation (M))|F}{I|L};{[VA]|[{I|L}G]}AVTRY{I|L}{M(Oxidation (M))|F};[Q{I|L}]VTRY{I|L}{M(Oxidation (M))|F} 6.1167;4.4771;3.8497;3.5402;3.2553;3.1273;2.21;2.1904;1.9356;1.7713 -;-;-;-;-;-;-;-;-;- 374 NaN NaN 657143.1 NaN 11285 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14582 64.481 NaN 1969200 35 0 208360 0.261 + 29100 TYGEIFEKF 9 117 567.2792195549672 1132.5438861767343 2 567.2794189453125 MULTI HCD FTMS 0 0 0 14580 1178929.25 0.056071054707992105 56 -1.4507827758789062 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 100.0907132914201 0.004261551473353346 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 67.805 0 0 5.987 5.987 87.256 0 0 0 12.670729759043752 8.051259089073682 8.051259089073682 8.051259089073682 0 2.2619229975844686 1.6989700043360187 1.0114393726401687 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};TY[YV][PS]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SP{I|L}[YT]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SP{I|L}K[YT]{M(Oxidation (M))|F};TYGE{[VA]|[{I|L}G]}[Y{I|L}]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S[K{I|L}]P[YT]{M(Oxidation (M))|F};[YT]GE[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 5.987;5.2761;4.8682;4.5892;4.4798;3.8783;3.8464;3.7404;3.6854;3.4211 -;-;-;-;-;-;-;-;-;- 2617 NaN NaN 391823.8 NaN 11286 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14583 64.485 NaN 2076300 35 0 168130 0.261 + 26393 SSSRSIFGSML 11 118 586.2923428753517 1170.5701328175032 2 586.8087768554688 MULTI HCD FTMS 0 0 0 14580 33329.28515625 0.1423111045966221 14 -0.372802734375 3 Unmodified _SSSRSIFGSML_ ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP 20.41453444215458 0.279209903849948 2 [YV]SRT{M(Oxidation (M))|F}TSV 9 7 67.582 0 0 5.7734 0 0 0 127.03909067723056 127.03909067723056 24.408278171776033 0 0 0 0 0 2 1.5387254899964358 0.28872548999643577 [YV]SRT{M(Oxidation (M))|F}TSV 5.7734 - 21647 NaN NaN 404099.6 NaN 11287 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14584 64.488 NaN 654400 35 0 103810 0.261 + 32150 VYSNSIYEL 9 69 544.2690780168721 1086.523603100544 2 544.2692260742188 MULTI HCD FTMS 0 0 0 14580 596933.625 1 0 0 4 Unmodified _VYSNSIYEL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 100.0907132914201 0.004261551473353346 2 [YV]SNS{I|L}YE{I|L} 9 0 + 84.338 0 0 7.7622 7.7622 94.64 0 0 0 4.137342758552691 61.661772202409466 4.137342758552691 21.03917193908117 0 1.9361818737241734 0 1.1861818737241734 1.2302046884880937 + + [YV]SNS{I|L}YE{I|L};[YT][QA]S{I|L}YE{I|L};[YV]SGGS{I|L}YE{I|L};[YV]SK{[DA]|[EG]}YE{I|L};[YT]{[QS]|[NT]}A{I|L}YE{I|L} 7.7622;5.8258;5.7824;5.7681;4.8608 +;-;-;-;- + 406 NaN NaN 197926.5 NaN 11288 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14585 64.491 NaN 1341900 35 0 368630 0.261 + 30879 VQPSLFYHL 9 96 552.2978398858879 1102.5811268385758 2 552.2982177734375 MULTI HCD FTMS 0 0 0 14580 466559.5 0.6862122750882291 -3 0.07205963134765625 5 Unmodified _VQPSLFYHL_ ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6 45.69961567697781 0.039180348357221985 2 QS[QT]{I|L}SQ{M(Oxidation (M))|F} 8 8 53.202 0 0 4.8253 0 0 165.16375362806167 0 165.16375362806167 0 34.049471895720984 0 0 0 0 0 1.3441876774005248 0.6139829889124311 QS[QT]{I|L}SQ{M(Oxidation (M))|F} 4.8253 - 1025 + NaN NaN 294256.5 NaN 11289 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14586 64.495 NaN 498730 35 0 74096 0.261 -1 YNAPTDHGLCI 11 66 630.7877674140175 1259.5609818948349 2 630.7879028320312 MULTI HCD FTMS 0 0 0 14580 300156.4375 0.5922961831791812 3 -0.0785064697265625 6 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 26.268140514670165 0.22820724222159966 2 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 84.162 0 0 6.6818 0 0 0 265.1307467096313 265.1307467096313 63.192672072328904 0 0 0 0 2.6989700043360187 2 0.3807196863200844 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.6818 - 231 + NaN NaN 168899.5 NaN 11290 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14587 64.498 NaN 524000 35 0 65364 0.261 + 16736 LYANMFERL 9 72 578.7946251656881 1155.574697398176 2 578.7947998046875 MULTI HCD FTMS 0 0 0 14580 147699.3125 0.5112007389428963 -3 0.07205963134765625 7 Unmodified _LYANMFERL_ ENSG00000004478|ENST00000001008|FKBP4 93.93812099017352 0.0044227730261779084 2 {I|L}YANM{M(Oxidation (M))|F}ER{I|L} 9 0 + 102.99 0 0 8.9121 8.9121 93.251 0 0 0 94.13479704297593 9.009461452434238 9.009461452434238 9.208187539523749 0 2.690614065464281 2 0.5 0.4247425010840047 + + {I|L}YANM{M(Oxidation (M))|F}ER{I|L};{I|L}YAGGM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]ANM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGGM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}][C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}E[VG]{I|L} 8.9121;8.1153;8.0091;6.2398;5.051 +;-;+;-;- + 338 + NaN NaN 185508 NaN 11291 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14588 64.501 NaN 205390 35 0 61721 0.262 + 3403 EEYAMTVV 8 38 471.21783557728725 940.4211182213745 2 471.218017578125 MULTI HCD FTMS 0 0 0 14580 157062.78125 1 0 0 8 Unmodified _EEYAMTVV_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 9.347437153973935 0.5250182646323369 2 VV 2 -1 25.217 0 0 2.6814 0 0 724.2730846243909 0 724.2730846243909 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 VV 2.6814 + + 13 NaN NaN 114037.1 NaN 11292 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14589 64.505 NaN 407210 35 0 53668 0.261 -1 LYTCPECGAI 10 76 563.748630108761 1125.4827072843218 2 563.7496337890625 MULTI HCD FTMS 0 0 0 14580 98877.1953125 1 0 0 9 Carbamidomethyl (C) _LYTC(Carbamidomethyl (C))PECGAI_ ENST00000394628.2_1_10:79492938-79493973:+|nuORF 14.838274106304384 0.3723198072575719 2 TQA{I|L} 4 -1 32.836 0 0 2.9175 0 0 694.2430897443375 0 694.2430897443375 0 10.159940911636767 0 0 0 0.4247425010840047 0 0 0.3807196863200844 TQA{I|L} 2.9175 - 55 NaN NaN 146051.8 NaN 11293 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14590 64.508 NaN 268780 35 0 36852 0.263 + 33902 YLPPGWAA 8 60 437.7263424205752 873.4381319079504 2 437.7264404296875 MULTI HCD FTMS 0 0 0 14580 43306.05078125 0.5848572942481313 -4 0.1048431396484375 10 Unmodified _YLPPGWAA_ SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|55|1|anti-sense 6.354104778181461 0.5325651638111438 2 E{M(Oxidation (M))|F} 2 8 33.583 0 0 3.845 0 0 579.3172650640035 0 579.3172650640035 0 17.385606273598313 0 0 0 1 0 0.5 0 E{M(Oxidation (M))|F} 3.845 - 18 + NaN NaN 141784 NaN 11294 3294 14580 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14592 64.513 NaN 410600 35 0 91475 0.327 -1 YPDTDVILM 9 65 541.7573407412204 1081.5001285492408 2 541.7573852539062 MULTI HCD FTMS 0 0 0 14591 129527.6015625 0.16653523940727696 16 -0.4218902587890625 1 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 23.1484247019978 0.1603590852062899 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 3.8093 0 0 690.2863349740786 0 690.2863349740786 0 13.750612633917001 0 0 0 1.5 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 3.8093 + + 96 + NaN NaN 152284.3 NaN 11295 3295 14591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14593 64.517 NaN 93651 35 0 12076 0.261 + 764 ASGLEALDSL 10 36 488.2532897412744 974.4920265493488 2 488.253173828125 MULTI HCD FTMS 0 0 0 14591 48922.35546875 0.08604240351144092 12 -0.30709075927734375 2 Unmodified _ASGLEALDSL_ LEP|p.T127A|1|0.25|ENSG00000174697|chr7:128254638-128254638|A/G|missense_variant 22.736283301280096 0.29844449404982915 2 {I|L}DS{I|L} 4 6 38.928 0 0 3.9947 0 0 528.2531605451187 0 528.2531605451187 0 23.44335023848103 0 0 0 0.8494850021680094 0 0 0 + {I|L}DS{I|L} 3.9947 + + 33 NaN NaN 99054.2 NaN 11296 3295 14591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14594 64.521 NaN 126550 35 0 8095.5 0.261 -1 0 57 527.4015259795934 NaN 0 527.2249755859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 SW 2 -1 8.5835 0 0 0.81531 0 0 132.31127842227426 644.3242891900999 776.6355676123742 0 0 0 0 0 0 0 0 0 SW 0.81531 - 23 + NaN NaN 108904.5 NaN 11297 3295 14591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14596 64.526 NaN 2596300 35 0 141150 0.326 + 29398 TYQRWQFTL 9 133 621.8168998628531 1241.6192467925061 2 621.81689453125 MULTI HCD FTMS 0 0 0 14595 749817.125 0.5836431288254975 2 -0.04903411865234375 1 Unmodified _TYQRWQFTL_ ENSG00000174231|ENST00000304992|PRPF8 104.48436234954404 0.0038428467764084714 2 [YT]QRWQ{M(Oxidation (M))|F}T{I|L} 9 0 + 80.477 0 0 6.4817 6.4817 89.362 0 0 0 15.617063521379961 15.892718607161171 15.617063521379961 9.208187539523749 0 2.341129063296272 1.3979400086720375 0.6861818737241735 0.2614393726401688 + + [YT]QRWQ{M(Oxidation (M))|F}T{I|L};[YT][AG]RWQ{M(Oxidation (M))|F}T{I|L};[YT]QRW[AG]{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T][SG]RWQ{M(Oxidation (M))|F}T{I|L};[YT]QRWQ{M(Oxidation (M))|F}{I|L}T;[{M(Oxidation (M))|F}T]R[SG]WQ{M(Oxidation (M))|F}T{I|L};[YT][AG]RW[AG]{M(Oxidation (M))|F}T{I|L};[YG][TA]RWQ{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T][SG]RW[AG]{M(Oxidation (M))|F}T{I|L};[YT][AG]RWQ{M(Oxidation (M))|F}{I|L}T 6.4817;5.74;5.74;5.2239;5.2017;5.1597;5.0019;4.6433;4.4857;4.46 +;-;-;-;-;-;-;-;-;- + 16557 NaN NaN 490274.5 NaN 11298 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14597 64.53 NaN 1425700 35 0 238610 0.262 + 20141 NYISGIQTI 9 82 504.771661527656 1007.5287701221121 2 504.7718505859375 MULTI HCD FTMS 0 0 0 14595 351055.25 0.2809783109478154 -5 0.12107086181640625 2 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 132.37960578797484 0.0004606598083464779 2 [YN]{I|L}SG{I|L}QT{I|L} 9 0 + 94.394 0 0 9.3689 9.3689 93.711 0 0 0 25.87128018967597 46.180336725694616 25.87128018967597 9.208187539523749 0 2.0669015600442577 1.5228787452803376 0.6549471895720984 1.055462187404089 + + [YN]{I|L}SG{I|L}QT{I|L};[YN]{I|L}SG{I|L}[AG]T{I|L};[YN]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{[SA]|[TG]}T{I|L};[{I|L}T]Q{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]E[KQ]{I|L}YN;[{I|L}T]Q{[VA]|[{I|L}G]}S[YN]{I|L};[{I|L}T]Q[KG][YG]E{I|L};[{I|L}T]E[KQ][YN]{I|L};[QT]{I|L}{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T][AG]{[VA]|[{I|L}G]}S{I|L}YN 9.3689;8.4549;5.3121;3.2743;2.9807;2.4634;2.3726;2.1698;1.9532;1.8016 +;-;-;-;-;-;-;-;-;- + 842 NaN NaN 303007.2 NaN 11299 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14598 64.534 NaN 686410 35 0 58118 0.261 + 21569 PYMAKFVVF 9 101 559.2909766375227 1116.5674003418453 2 559.2913818359375 MULTI HCD FTMS 0 0 0 14595 195608.296875 0.5138588736023343 5 -0.14707183837890625 3 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 92.8221339359638 0.0044520161739443126 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 2 + 92.942 0 0 8.3239 8.3239 87.984 0 0 0 21.751736484954378 58.9625938194564 21.751736484954378 0.12304505667545129 0 2.305462187404089 1.6989700043360187 0 0.3054621874040891 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KVV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KAV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KA{M(Oxidation (M))|F}VV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AKV{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AK{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}KV{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KAV{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KA{M(Oxidation (M))|F}V{M(Oxidation (M))|F}V 8.3239;8.3129;8.0433;7.0873;7.0763;7.0633;7.0523;6.7827;5.8267;5.8157 -;+;-;-;-;-;-;-;-;- + 1834 NaN NaN 184823.1 NaN 11300 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14599 64.537 NaN 786670 35 0 105840 0.261 + 25593 SFVRLQMDF 9 89 571.7853092826892 1141.5560656321784 2 571.7979736328125 MULTI HCD FTMS 0 0 0 14595 9903.95703125 0.4076961131020468 1 -0.0294952392578125 4 Unmodified _SFVRLQMDF_ ENST00000502360.5_1_4:130017289-130023978:+|nuORF 11.640296217721598 0.25978676193971967 2 MYS 3 8 33.812 0 0 2.9619 0 0 0 757.3679892929388 757.3679892929388 6.469479391192596 0 0 0 0 0 0 0.7614393726401688 0 MYS 2.9619 - 300 + NaN NaN 211494.6 NaN 11301 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14600 64.54 NaN 877080 35 0 81562 0.261 -1 0 79 596.9667455343069 1787.8784072031208 3 596.9669799804688 MULTI HCD FTMS 0 0 0 14595 62270.78125 0.14040661489045103 8 -0.2056427001953125 5 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.4525 0 0 1475.731139275919 0 1475.731139275919 0 11.276362525516532 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4525 - 45 NaN NaN 239323.1 NaN 11302 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14601 64.544 NaN 381030 35 0 62803 0.261 + 4014 ERQVQIYP 8 59 516.7772636749492 NaN 0 516.7616577148438 PEAK HCD FTMS 0 0 0 14595 28163.23828125 0.6749975283694504 3 -0.08136749267578125 6 Unmodified _ERQVQIYP_ REV__ENSG00000074276|ENST00000261944|CDHR2 6.723162845929126 0.38822285293237185 2 {I|L}H 2 -1 7.4743 0 0 0.72457 0 0 616.3183995649389 162.05576502017814 778.374164585117 0 0 0 0 0 0 0 0 0 {I|L}H 0.72457 - 88 + NaN NaN 146001 NaN 11303 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14602 64.547 NaN 192990 35 0 20824 0.261 + 17460 LYSKIEALL 9 48 525.3154889477064 1048.6164249622127 2 525.315673828125 MULTI HCD FTMS 0 0 0 14595 8382.1396484375 0.11883702215485983 2 -0.04903411865234375 7 Unmodified _LYSKIEALL_ ENSG00000118855|ENST00000415822|MFSD1;ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-3|MFSD1;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1 22.736283301280096 0.1639198954644489 2 A{I|L}{I|L} 3 6 23.416 0 0 2.2331 0 0 733.4005167059773 0 733.4005167059773 0 9.436974992327123 0 0 0 0.3494850021680094 0 0 0 + A{I|L}{I|L} 2.2331 + + 18 NaN NaN 126524.4 NaN 11304 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14603 64.55 NaN 177470 35 0 33859 0.261 -1 0 54 467.2332696268085 932.4519863204171 2 467.2333679199219 MULTI HCD FTMS 0 0 0 14595 37439.12109375 0.04443336944717268 -10 0.26525115966796875 8 NaN NaN 2 {I|L}{I|L} 2 -1 10.969 0 0 1.1764 0 0 59.04790590971647 644.2248596035028 703.2727655132193 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1764 - 10 + NaN NaN 123317.5 NaN 11305 3296 14595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14605 64.555 NaN 508390 35 0 28068 0.327 + 32494 WFDPTTSQL 9 111 547.7589026598305 1093.5032523864609 2 547.7601928710938 MULTI HCD FTMS 0 0 0 14604 121259.4765625 0.23854428354551152 6 -0.16320037841796875 1 Unmodified _WFDPTTSQL_ REV__ENSG00000060656|ENST00000373779|PTPRU;REV__ENST00000465525.6_1_1:29647190-29652170:+|nuORF;REV__nc|ENSG00000060656|Q92729-3|PTPRU;REV__nc|ENSG00000060656|Q92729-4|PTPRU;REV__nc|ENSG00000060656|Q92729|PTPRU 65.23502041540118 0.010630085227462206 2 ATSQ{I|L} 5 -1 51.419 0 0 4.7022 0 0 575.2367088856313 0 575.2367088856313 0 31.62969688151624 0 0 0 1.6382104921644451 0 1.1549471895720984 0 ATSQ{I|L} 4.7022 - 1955 NaN NaN 161390.9 NaN 11306 3297 14604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14606 64.56 NaN 353960 35 0 50594 0.261 + 11856 KFAEEFYSF 9 60 584.2714072380124 1166.5282615428248 2 584.271728515625 MULTI HCD FTMS 0 0 0 14604 71774.96875 0.06742029208427658 18 -0.47432708740234375 2 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 47.594388314883695 0.03493607795751234 2 [Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 9 3 + 76.137 0 0 6.5268 6.5268 92.794 0 0 0 18.529543537615183 70.6522093331786 18.529543537615183 25.440680443502757 0 2.1549471895720984 1.6989700043360187 0.3494850021680094 0 [Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[TA]{M(Oxidation (M))|F}E[Q{I|L}]{[ES]|[DT]|[{I|L}C]} 6.5268;4.3459;0.95907 -;-;- 80 NaN NaN 147613.7 NaN 11307 3297 14604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14607 64.563 NaN 203720 35 0 11895 0.261 + 11204 IYKEIWSI 8 59 526.295466145762 1050.576379358324 2 526.2816162109375 MULTI HCD FTMS 0 0 0 14604 7094.42529296875 0.14346636689579076 1 -0.01953887939453125 3 Unmodified _IYKEIWSI_ REV__tr|U7STF8|U7STF8_FUSNUAmidohydrolase-relateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01393PE=4SV=1 23.1484247019978 0.4234759064137959 2 SW{[QN]|[E{I|L}]|[KN]}WS{I|L} 7 -1 27.491 0 0 2.6168 0 0 131.10957440608632 0 131.10957440608632 0 3.027194418743804 0 0 0 0.3494850021680094 0 0.3252574989159953 0.3252574989159953 SW{[QN]|[E{I|L}]|[KN]}WS{I|L} 2.6168 - 146 + NaN NaN 116859.1 NaN 11308 3297 14604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14608 64.566 NaN 138130 35 0 6307.8 0.261 + 4635 EYMEHVYLI 9 51 598.7862434157602 1195.5579338983202 2 599.2863159179688 MULTI HCD FTMS 0 0 0 14604 41769.81640625 0.1908569523967136 11 -0.2942962646484375 4 Unmodified _EYMEHVYLI_ ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 18.13498045792455 0.20367413111508956 2 {I|L}{I|L} 2 7 19.38 0 0 1.621 0 0 951.3802357404312 0 951.3802357404312 0 12.390690719683093 0 0 0 0.3807196863200844 0 0 0 + {I|L}{I|L} 1.621 + + 12 NaN NaN 113085.7 NaN 11309 3297 14604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14609 64.57 NaN 118680 35 0 32586 0.263 -1 0 37 454.66246108605617 907.3103692389124 2 454.6619873046875 MULTI HCD FTMS 0 0 0 14604 23873.36328125 0.13325843573699017 28 -0.7318954467773438 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.6096 0 0 742.2318150170358 0 742.2318150170358 0 7.808487663269967 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6096 - 5 + NaN NaN 109682.2 NaN 11310 3297 14604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14611 64.575 NaN 628410 35 0 42681 0.327 -1 KYMDVQFDF 9 78 604.7681072670384 1207.5216616008768 2 604.7681274414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 38.61474834105838 0.07170385841135779 2 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 53.704 0 0 4.4474 0 0 262.09520156074376 0 262.09520156074376 0 27.854807820475497 0 0 0 1.3494850021680094 0 0 0.4247425010840047 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.4474 - 748 NaN NaN 188704.8 NaN 11311 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14612 64.579 NaN 1081200 35 0 149340 0.261 + 24422 RYLADLPTL 9 88 531.303000853278 1060.591448773356 2 531.3032836914062 MULTI HCD FTMS 0 0 0 14610 139661.140625 0.42497762503166536 4 -0.114227294921875 2 Unmodified _RYLADLPTL_ ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3-4|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 61.60191391372663 0.015340508911304802 2 [YR]{I|L}W{I|L}PT{I|L} 8 2 [YR]{I|L} + + 46.655 2.9318 0.67828 4.399 4.399 61.459 0 0 0 0 19.488474775526186 0 0 0 1.9361818737241734 0 1.6747425010840047 0 [YR]{I|L}W{I|L}PT{I|L} 4.399 - 420 + NaN NaN 268479.8 NaN 11312 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14613 64.583 NaN 312890 35 0 52418 0.261 + -1 LFCETIMFTL 10 61 637.8116367822427 1273.6087206312852 2 637.812255859375 MULTI HCD FTMS 0 0 0 14610 82443.078125 0.5733798280020369 4 -0.114227294921875 3 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))ETIMFTL_ REV__ENSG00000279961|ENST00000623286|OR8U3 37.97399986684836 0.1629881689457739 2 E[C(Carbamidomethyl (C))S]Q{M(Oxidation (M))|F}T{I|L} 7 -1 49.129 0 0 3.8575 0 0 390.23277480293126 0 390.23277480293126 0 35.941672674783476 0 0 0 0.9247425010840047 0 1.2302046884880937 0 E[C(Carbamidomethyl (C))S]Q{M(Oxidation (M))|F}T{I|L} 3.8575 - 137 NaN NaN 138814.2 NaN 11313 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14614 64.586 NaN 267060 35 0 57203 0.263 -1 TAMDVVYAL 9 47 499.7467790357058 997.4790051382116 2 499.74688720703125 MULTI HCD FTMS 0 0 0 14610 43851.1484375 0.07325929163169208 17 -0.4547882080078125 4 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 2 GVYA{I|L} 5 -1 49.38 0 0 4.9505 0 0 476.2045155255875 0 476.2045155255875 0 39.44660339379311 0 0 0 1.3807196863200843 0 0 0 GVYA{I|L} 4.9505 - 112 NaN NaN 122690.4 NaN 11314 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14615 64.589 NaN 379130 35 0 81978 0.261 -1 ACGNDDCR 8 54 455.6602699837403 909.3059870342806 2 455.6600341796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.5392561982033289 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.7029 0 0 744.2268987547869 0 744.2268987547869 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7029 - 11 + NaN NaN 156857 NaN 11315 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14616 64.599 NaN 112470 35 0 10751 0.261 + 7161 FSGVWVLEG 9 58 497.2576904296875 NaN 0 497.2576904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FSGVWVLEG_ REV__ENST00000456496.6_1_7:149575832-149576763:+|nuORF;REV__ENST00000471877.5_1_7:149575832-149576763:+|nuORF;REV__nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2;REV__nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2 7.289230182591677 0.2599242500475609 2 EG 2 -1 10.969 0 0 1.1052 0 0 130.096258299025 673.3187349908811 803.4149932899061 0 0 0 0 0 0 0 0 0 EG 1.1052 + + 9 + NaN NaN 130557.9 NaN 11316 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14617 64.602 NaN 79000 35 0 7604.3 0.261 + 2772 DYCSHLVRVLF 11 44 451.23365721283665 NaN 0 451.23455810546875 PEAK HCD FTMS 0 0 0 14610 20019.896484375 0.6038931129868703 -7 0.17010498046875 7 Unmodified _DYCSHLVRVLF_ ENST00000490210.6_1_18:76873315-76936839:+|nuORF 3.8459078486920597 0.3312104104652976 2 A 1 11 2.4743 0 0 0.27478 0 0 664.3367011670812 162.0559023492797 826.3926035163609 0 0 0 0 0 0 0 0 0 A 0.27478 - 8 + NaN NaN 118848.7 NaN 11317 3298 14610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14619 64.607 NaN 568560 35 0 57039 0.327 + 7042 FPYVYHFTL 9 81 593.7989319033193 1185.5833108734384 2 595.28955078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FPYVYHFTL_ REV__nc|ENSG00000116885|Q8WVF1-4|OSCP1 14.581692164780916 0.23437375358055648 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}[SG] 10 -1 + 46.565 0 0 3.9276 3.9276 60.875 0 0 0 13.010299956639813 0.7918124604762511 0.7918124604762511 0 0 0 1.5228787452803376 0.2742275032520141 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V[SG];[YV]P{M(Oxidation (M))|F}RDV{M(Oxidation (M))|F}[SG];[YV]P{M(Oxidation (M))|F}RD{M(Oxidation (M))|F}V[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VV{[WT]|[RM]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV[VG]D{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};{M(Oxidation (M))|F}N{M(Oxidation (M))|F}DRV{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}[YG]VV{[WT]|[RM]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[QN]|[E{I|L}]|[KN]}[SG];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[WT]|[RM]} 3.9276;3.9276;2.8302;2.8302;2.6462;2.6225;2.5989;2.4628;2.4365;2.3923 -;-;-;-;-;-;-;-;-;- 2363 NaN NaN 195773.9 NaN 11318 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14620 64.611 NaN 372070 35 0 76511 0.261 + 18716 MYPYIYHVL 9 56 607.798955348531 1213.5833577638618 2 607.7993774414062 MULTI HCD FTMS 0 0 0 14618 91469.59375 0.5236514467146631 -6 0.1466064453125 2 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 79.93452657146344 0.0058735632865073864 2 [Y{M(Oxidation (M))|F}]PY{I|L}YHV{I|L} 9 0 + 51.022 0 0 4.2043 4.2043 90.432 0 0 0 5.6424927368725974 41.29039059593687 5.6424927368725974 51.0223656718172 0 1.992992819099939 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}YHV{I|L} 4.2043 + + 91 NaN NaN 158183.8 NaN 11319 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14621 64.615 NaN 900930 35 0 67401 0.261 + 14586 LFLLHMPQL 9 101 556.3182748981046 1110.6219968630091 2 556.8209838867188 MULTI HCD FTMS 0 0 0 14618 143605.453125 0.19816222639778366 -3 0.08136749267578125 3 Unmodified _LFLLHMPQL_ REV__MFSD5|p.S316F|1|0.27|ENSG00000182544|chr12:53253782-53253782|C/T|missense_variant 28.486842064014134 0.11819662193267319 2 {I|L}Y{I|L}TVYN 7 -1 63.775 0 0 5.7422 0 0 0 241.15520654849846 241.15520654849846 24.723396225071674 0 0 0 0 1 1.5228787452803376 0.3494850021680094 0.9581706663129559 {I|L}Y{I|L}TVYN 5.7422 - 3144 + NaN NaN 233676.7 NaN 11320 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14622 64.618 NaN 476690 35 0 41997 0.261 + 14324 LDPGGRSDIT 10 79 515.7628675761099 1029.5111822190197 2 515.7631225585938 MULTI HCD FTMS 0 0 0 14618 93110.609375 0.9303891852707559 -1 0.0323333740234375 4 Unmodified _LDPGGRSDIT_ ENSG00000070886|ENST00000166244|EPHA8;EPHA8|p.N363Kfs*112|1|0.25|ENSG00000070886|chr1:22588977-22588978|-/A|frameshift_variant;nc|ENSG00000070886|P29322-2|EPHA8 26.268140514670165 0.2654086933305545 2 [YN]{I|L}S 4 9 56.242 0 0 5.463 0 0 0 549.2659518503868 549.2659518503868 14.048654826330527 0 0 0 0 1.1989700043360187 2 0.805462187404089 0 [YN]{I|L}S 5.463 - 285 + NaN NaN 162288 NaN 11321 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14623 64.622 NaN 568260 35 0 75574 0.261 + -1 LLSRSLRSM 9 70 539.805853942585 1077.59715495197 2 539.8057861328125 MULTI HCD FTMS 0 0 0 14618 58735.234375 0.08018767181754527 17 -0.4512939453125 5 Oxidation (M) _LLSRSLRSM(Oxidation (M))_ REV__ENSG00000135535|ENST00000310786|CD164;REV__ENST00000512212.1_1_6:109697265-109703581:-|nuORF;REV__nc|ENSG00000135535|Q04900-2|CD164;REV__nc|ENSG00000135535|Q04900-3|CD164;REV__nc|ENSG00000135535|Q04900-4|CD164;REV__nc|ENSG00000135535|Q04900-5|CD164 13.50788311687929 0.24365122550260465 2 {I|L}{I|L}DQE{I|L}{I|L}S 8 -1 35.761 0 0 3.3186 0 0 0 163.07327424200676 163.07327424200676 2.796765842090778 0 0 0 0 0 1.3979400086720375 0 0.6989700043360187 {I|L}{I|L}DQE{I|L}{I|L}S 3.3186 - 192 NaN NaN 171517.8 NaN 11322 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14624 64.625 NaN 469870 35 0 104020 0.261 -1 LMCPPQVVC 9 59 523.7449680354349 1045.4753831376697 2 523.7442016601562 MULTI HCD FTMS 0 0 0 14618 52050.38671875 0.7711758387997044 -5 0.13037872314453125 6 Carbamidomethyl (C) _LMCPPQVVC(Carbamidomethyl (C))_ ENST00000493635.1_1_6:36993330-36995936:+|nuORF 24.67388899826682 0.14717941214954053 2 {I|L}T 2 -1 19.464 0 0 1.8617 0 0 0 828.3201583733465 828.3201583733465 4.859856381998782 0 0 0 0 0 0 0 0 {I|L}T 1.8617 - 49 + NaN NaN 154802.9 NaN 11323 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14625 64.628 NaN 272980 35 0 64573 0.262 + 25048 SAALDVEL 8 53 409.2187508303881 816.4229487275762 2 409.2185974121094 MULTI HCD FTMS 0 0 0 14618 33389.5859375 0.19946592433537602 -7 0.18947601318359375 7 Unmodified _SAALDVEL_ ENSG00000163479|ENST00000295702|SSR2;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF 85.35673624503755 0.01682165142544485 2 {[SA]|[TG]}[{I|L}A]DVE{I|L} 8 0 + 69.078 0 0 8.4611 8.4611 90.817 0 0 0 0.18446553540229615 0.18446553540229615 0.18446553540229615 6.599330555070395 0 2.274227503252014 1.0969100130080565 0.7742275032520141 0 + + {[SA]|[TG]}[{I|L}A]DVE{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}VDVE{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}[QT]VE{I|L};{[QN]|[E{I|L}]|[KN]}[DV][QT]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}[QT]{I|L} 8.4611;7.6528;5.5998;5.1124;1.6502;1.1628 +;-;-;-;-;- + 109 + NaN NaN 127241.9 NaN 11324 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14626 64.632 NaN 243290 35 0 17570 0.261 -1 GCLIWEVF 8 71 512.2532461998825 1022.491939466565 2 512.2527465820312 MULTI HCD FTMS 0 0 0 14618 40964.36328125 0.697327979664143 -9 0.23522186279296875 8 Carbamidomethyl (C) _GC(Carbamidomethyl (C))LIWEVF_ ENSG00000142186|ENST00000270176|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1 34.18733598223924 0.30560024141787767 2 EV{M(Oxidation (M))|F} 3 -1 38.729 0 0 3.7877 0 0 629.3012091621018 0 629.3012091621018 0 18.80719686320084 0 0 0 1.3494850021680094 0 0.3807196863200844 0 EV{M(Oxidation (M))|F} 3.7877 + + 136 NaN NaN 124947.8 NaN 11325 3299 14618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14628 64.636 NaN 1649400 35 0 135520 0.327 + 32176 VYSRTFTWL 9 107 586.8083673034429 1171.6021816736857 2 586.8087768554688 MULTI HCD FTMS 0 0 0 14627 876095 0.5879293608337223 5 -0.12760162353515625 1 Unmodified _VYSRTFTWL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 114.18643581695662 0.002258955990713129 2 VYR{M(Oxidation (M))|F}TSTW{I|L} 9 3 + 108.5 0 0 9.2605 9.2605 89.804 0 0 0 2.8686828741628148 2.8686828741628148 2.8686828741628148 1.7866624821563448 0 2.1237125054200234 2 1.2644979867444217 0 VYR{M(Oxidation (M))|F}TSTW{I|L};VYSRT{M(Oxidation (M))|F}TW{I|L};VYRST{M(Oxidation (M))|F}TW{I|L};[YV]SRT{M(Oxidation (M))|F}TW{I|L};[YV][R{M(Oxidation (M))|F}]TSTW{I|L};[YV][PA]HVSTW{I|L};[{M(Oxidation (M))|F}T]TRT{M(Oxidation (M))|F}TW{I|L};[YV]SRTWT{M(Oxidation (M))|F}{I|L};[YV]SRWSYV{I|L};[YV]SRWSVY{I|L} 9.2605;9.108;9.0678;9.0157;7.455;6.6495;6.5068;6.3511;6.2286;5.9923 -;+;-;+;-;-;-;-;-;- + 17587 + NaN NaN 351277.9 NaN 11326 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14629 64.641 NaN 1110200 35 0 108440 0.261 + 29101 TYGEIFEKF 9 104 567.2792195549672 1132.5438861767343 2 567.2792358398438 MULTI HCD FTMS 0 0 0 14627 475085.53125 0.022595543213211684 62 -1.5880279541015625 2 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 90.13494162714682 0.004522430935000059 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 67.748 0 0 5.9819 5.9819 86.151 0 0 0 8.339993556128107 5.533956428526139 5.533956428526139 5.533956428526139 0 2.254432191740108 1.6989700043360187 0.9674165578762486 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};[YT]GE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[TA]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YT]GE[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};TYG[Y{I|L}]{I|L}{[DA]|[EG]}A{M(Oxidation (M))|F};[RH]E[C(Carbamidomethyl (C))K][VS]A{M(Oxidation (M))|F} 5.9819;5.4933;5.2455;4.483;4.2104;3.9943;3.5246;2.8763;2.6327;2.5809 -;-;-;-;-;-;-;-;-;- 2790 NaN NaN 276203.6 NaN 11327 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14630 64.645 NaN 1529700 35 0 365940 0.261 + 24706 RYLTVAAVF 9 76 520.3003137195551 1038.5860745059101 2 520.3004150390625 MULTI HCD FTMS 0 0 0 14627 629629.375 0.016795638176731808 33 -0.849700927734375 3 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 47.748688679222035 0.03472022231463587 2 [Y{I|L}]R{[TV]|[{I|L}S]}AAV{M(Oxidation (M))|F} 9 2 + 51.705 0 0 4.9784 4.9784 90.848 0 0 0 2.403405327429411 44.715168808616355 2.403405327429411 33.767959391884546 0 2.0356668758921828 0 0.8494850021680094 0 [Y{I|L}]R{[TV]|[{I|L}S]}AAV{M(Oxidation (M))|F};[Y{I|L}]R{[TV]|[{I|L}S]}[Q{I|L}]{M(Oxidation (M))|F} 4.9784;1.7271 -;- 117 NaN NaN 333765.9 NaN 11328 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14631 64.648 NaN 1231000 35 0 310360 0.261 + 30880 VQPSLFYHL 9 91 552.2978398858879 1102.5811268385758 2 552.298095703125 MULTI HCD FTMS 0 0 0 14627 391268.3125 0.575474551242783 3 -0.081817626953125 4 Unmodified _VQPSLFYHL_ ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6 41.8396318013385 0.056899836730939755 2 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 8 7 46.73 0 0 4.2383 0 0 165.16228017372867 0 165.16228017372867 0 20.727604658744887 0 0 0 0 0 1.2474250108400469 0.23965182871044374 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 4.2383 - 850 + NaN NaN 290968.9 NaN 11329 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14632 64.651 NaN 343190 35 0 45562 0.261 + -1 MEYMTQLR 8 71 544.2491153887769 1086.4836778443537 2 544.2688598632812 MULTI HCD FTMS 0 0 0 14627 9742.919921875 0.03493961728109636 37 -0.951080322265625 5 Oxidation (M) _MEYM(Oxidation (M))TQLR_ REV__ENSG00000102743|ENST00000338625|SLC25A15;REV__ENSG00000120329|ENST00000239451|SLC25A2 18.13498045792455 0.4603629008820478 2 MEY{I|L}S 5 -1 40.222 0 0 3.702 0 0 0 460.18161951236567 460.18161951236567 20.37183390233615 0 0 0 0 0 0 1.1549471895720984 0 MEY{I|L}S 3.702 - 281 + NaN NaN 142311.6 NaN 11330 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14633 64.654 NaN 1256600 35 0 126250 0.261 + 20744 PGCIQIVDDRT 11 99 608.8029024557441 1215.591251978288 2 608.8218994140625 MULTI HCD FTMS 0 0 0 14627 36545.16796875 0.6893105239188884 1 -0.03619384765625 6 Unmodified _PGCIQIVDDRT_ REV__ENSG00000135457|ENST00000257915|TFCP2;REV__nc|ENSG00000135457|Q12800-2|TFCP2;REV__nc|ENSG00000135457|Q12800-3|TFCP2;REV__nc|ENSG00000135457|Q12800-4|TFCP2 26.268140514670165 0.22820724222159966 2 [Y{I|L}]ND[R{I|L}]{I|L}Y{M(Oxidation (M))|F} 9 -1 + 54.32 0 0 4.4686 4.4686 81.944 0 0 0 0.7974483110184494 7.8757921891807925 0.7974483110184494 0.7974483110184494 0 0 1.0969100130080565 0.3807196863200844 1.7104093769761874 [Y{I|L}]ND[R{I|L}]{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD[R{I|L}]{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]ND[R{I|L}]Y{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD[R{I|L}]Y{I|L}{M(Oxidation (M))|F};Q{[CP]|[EA]}{I|L}[R{I|L}]DD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[Y{I|L}]GGD[R{I|L}]{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]NQQK{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DQQK{I|L}Y{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]D[R{I|L}]{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]GGD[R{I|L}]Y{I|L}{M(Oxidation (M))|F} 4.4686;4.403;4.0174;3.9518;3.8207;3.0941;3.021;2.9554;2.9434;2.6429 -;-;-;-;-;-;-;-;-;- 809 NaN NaN 276375.4 NaN 11331 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14634 64.658 NaN 1458300 35 0 109390 0.262 -1 NSPRMDLTL 9 94 531.7663055313462 1061.5180581294924 2 531.7667846679688 MULTI HCD FTMS 0 0 0 14627 239452.046875 0.4085991892928987 -6 0.15988922119140625 7 Oxidation (M) _NSPRM(Oxidation (M))DLTL_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant 45.69961567697781 0.039180348357221985 2 D{I|L}T{I|L} 4 -1 45.424 0 0 4.2792 0 0 601.2650624005875 0 601.2650624005875 0 26.663617425480894 0 0 0 1.0501648626366045 0 0.75 0 D{I|L}T{I|L} 4.2792 + + 783 NaN NaN 316675.4 NaN 11332 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14635 64.661 NaN 492260 35 0 51069 0.261 + 16737 LYANMFERL 9 74 578.7946251656881 1155.574697398176 2 578.7950439453125 MULTI HCD FTMS 0 0 0 14627 152503.15625 0.5278272785875289 3 -0.081817626953125 8 Unmodified _LYANMFERL_ ENSG00000004478|ENST00000001008|FKBP4 87.25819977447905 0.004597812622239197 2 {I|L}YANM{M(Oxidation (M))|F}ER{I|L} 9 0 + 93.642 0 0 8.1035 8.1035 92.194 0 0 0 83.3807485893402 8.384767769392738 8.384767769392738 9.208187539523749 0 2.2104093769761874 2 0.7887254899964358 0.3807196863200844 + + {I|L}YANM{M(Oxidation (M))|F}ER{I|L};{I|L}YAGGM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]ANM{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]AGGM{M(Oxidation (M))|F}ER{I|L};{I|L}YA[{M(Oxidation (M))|F}T]{[WS]|[C(Carbamidomethyl (C)){I|L}]}R{I|L};[Y{I|L}]A{[CP]|[EA]}[YG]TR{I|L};[RH][RN]MNC{I|L}{I|L};[RH][RN]MGGC{I|L}{I|L} 8.1035;7.3066;6.0604;4.7238;4.3787;3.5373;1.6088;0.57467 +;-;+;-;-;-;-;- + 330 + NaN NaN 178684.3 NaN 11333 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14636 64.664 NaN 238130 35 0 25726 0.261 -1 YNAPTDHGLCI 11 48 630.7877674140175 1259.5609818948349 2 630.7879638671875 MULTI HCD FTMS 0 0 0 14627 72542.46875 0.1431474457682422 9 -0.2423858642578125 9 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 15.248480904072842 0.3242218977034194 2 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 73.237 0 0 5.8145 0 0 0 265.12958704166255 265.12958704166255 55.27819381628923 0 0 0 0 2.0356668758921828 2 0 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 5.8145 - 101 + NaN NaN 138703.3 NaN 11334 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14637 64.668 NaN 1002000 35 0 358740 0.264 + 20593 PEKYTRIYF 9 60 406.2167902515407 1215.6285413548221 3 406.5513000488281 MULTI HCD FTMS 0 0 0 14627 87846.5546875 0.15269538953952105 -6 0.15988922119140625 10 Unmodified _PEKYTRIYF_ REV__ENSG00000118402|ENST00000369816|ELOVL4 19.625955294349634 0.19079243933902879 2 {I|L}R{I|L}Y{M(Oxidation (M))|F} 5 -1 57.959 0 0 4.7678 0 0 505.217721629235 0 505.217721629235 0 57.245462655597095 0 0 0 2 0 0 0 {I|L}R{I|L}Y{M(Oxidation (M))|F} 4.7678 - 41 + NaN NaN 241451 NaN 11335 3300 14627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14639 64.673 NaN 1560600 35 0 317430 0.327 + 14030 KYTSWYVAL 9 79 565.7976788446035 1129.580804756007 2 565.7854614257812 MULTI HCD FTMS 0 0 0 14638 133386.375 0.789978712370478 -1 0.03619384765625 1 Unmodified _KYTSWYVAL_ ENSG00000138685|ENST00000644866|FGF2;nc|ENSG00000138685|P09038-1|FGF2;nc|ENSG00000138685|P09038-3|FGF2;nc|ENSG00000138685|P09038|FGF2 22.736283301280096 0.1639198954644489 2 {I|L}ADM{[QG]|[NA]}A{I|L}{M(Oxidation (M))|F} 9 8 50.328 0 0 4.4554 0 0 165.10456548159692 0 165.10456548159692 0 8.65279269351241 0 0 0 0.3494850021680094 0 0.2742275032520141 0.4247425010840047 {I|L}ADM{[QG]|[NA]}A{I|L}{M(Oxidation (M))|F} 4.4554 - 1024 + NaN NaN 335613.8 NaN 11336 3301 14638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14640 64.677 NaN 1566100 35 0 62244 0.261 + 27197 SYNNFFRMF 9 110 621.2740136938751 1240.53347445455 2 621.2744750976562 MULTI HCD FTMS 0 0 0 14638 428217.34375 0.08938227571374033 18 -0.457550048828125 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 76.981 0 0 6.2055 6.2055 89.556 0 0 0 6.28415995069723 47.28696081014575 6.28415995069723 9.208187539523763 0 2.9247425010840047 0 0.5941876774005248 1.7000612056866313 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WQ][PG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];[WQ][PG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGN[MT];[WQ][PG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NGG[MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NN[MT];[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP]SNN[MT];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R[QP]SNN[MT] 6.2055;5.4632;5.2701;3.9175;3.7429;3.0041;3.0041;2.4959;2.4457;2.1491 +;-;-;-;-;-;-;-;-;- + 6070 NaN NaN 347856.6 NaN 11337 3301 14638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14641 64.681 NaN 2292600 35 0 143570 0.261 + 22713 QYASAFHFL 9 97 542.2667660525767 1082.5189791719533 2 542.2669067382812 MULTI HCD FTMS 0 0 0 14638 534947.4375 0.6170633779147755 -5 0.14707183837890625 3 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 101.72198241140316 0.004218805956062179 2 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 8 6 63.89 0 0 5.9019 0 0 165.07904250312657 0 165.07904250312657 0 23.05732060635067 0 0 0 0.6139829889124311 0 1.110924374808178 0 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 5.9019 - 1775 NaN NaN 449089.4 NaN 11338 3301 14638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14642 64.684 NaN 667940 35 0 109950 0.261 + 14082 KYWDVPPPGF 10 84 603.3026020785045 1204.590651223809 2 603.3021850585938 MULTI HCD FTMS 0 0 0 14638 175524.390625 0.38798795000624453 -24 0.6743049621582031 4 Unmodified _KYWDVPPPGF_ ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 38.175570920033316 0.1612389583597779 2 YVGPP{[RE]|[WV]}SGP{M(Oxidation (M))|F} 11 8 + 71.202 0 0 5.9109 5.9109 85.49 0 0 0 57.08993232666853 7.41190756965527 7.41190756965527 4.035984316004232 0 1.1549471895720984 2 0.3807196863200844 0.2614393726401688 YVGPP{[RE]|[WV]}SGP{M(Oxidation (M))|F};YVGPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};YVGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]Y{M(Oxidation (M))|F};YVGPP[TA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}P{M(Oxidation (M))|F};YVGP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]Y{M(Oxidation (M))|F};[YV]GS{[RE]|[WV]}[KG]Y{M(Oxidation (M))|F};YVGPV[WP]SGP{M(Oxidation (M))|F};YVGPV{[WS]|[C(Carbamidomethyl (C)){I|L}]}PGP{M(Oxidation (M))|F};[YV]GPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}QQAA 5.9109;5.5759;5.5759;4.6766;4.6232;4.4405;4.4092;4.213;4.194;3.8164 -;-;-;-;-;-;-;-;-;- 640 + NaN NaN 208611 NaN 11339 3301 14638 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14644 64.689 NaN 2053500 35 0 360620 0.327 + 20142 NYISGIQTI 9 88 504.771661527656 1007.5287701221121 2 504.7718505859375 MULTI HCD FTMS 0 0 0 14643 1248792.625 0.9995111666798563 1 -0.0294342041015625 1 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 159.1008501968603 9.756703400391535E-09 2 [YN]{I|L}SG{I|L}QT{I|L} 9 0 + 112.9 0 0 11.206 11.206 94.567 0 0 0 31.425902063716862 65.45371572735597 31.425902063716862 9.208187539523749 0 2.385151878060192 1.5228787452803376 1.285666875892183 1.6351518780601921 + + [YN]{I|L}SG{I|L}QT{I|L};[YN]{I|L}SG{I|L}[AG]T{I|L};[YN]{I|L}[KT]QE{I|L};[YN]{I|L}[KT][AG]E{I|L};[{I|L}T]Q{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T]E[KQ]{I|L}YN;[{I|L}T]Q{[VA]|[{I|L}G]}S[YN]{I|L};[{I|L}T]E[KQ][YN]{I|L};[QT]{I|L}{[VA]|[{I|L}G]}S{I|L}YN;[{I|L}T][AG]{[VA]|[{I|L}G]}S{I|L}YN 11.206;10.292;5.1078;4.1885;3.2677;3.1261;2.5485;2.4069;2.292;1.7037 +;-;-;-;-;-;-;-;-;- + 1088 NaN NaN 418822.5 NaN 11340 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14645 64.693 NaN 676060 35 0 145020 0.261 -1 LLSICLDD 8 70 467.2332696268085 932.4519863204171 2 467.2334289550781 MULTI HCD FTMS 0 0 0 14643 699313.8125 0.8299572234218547 -4 0.114227294921875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLSICLDD_ ENST00000414195.6_1_2:145780810-145939628:+|nuORF;ENST00000420472.1_1_2:145780789-145929735:+|nuORF;ENST00000451478.5_1_2:145780789-145939807:+|nuORF;ENST00000595686.5_1_2:145693006-145939807:+|nuORF;ENST00000596034.5_2_2:145780810-145939776:+|nuORF;ENST00000599187.5_1_2:145875193-145939807:+|nuORF;ENST00000602041.5_2_2:145875217-145939776:+|nuORF;ENST00000605238.3_1_2:145929591-145938821:+|nuORF;ENST00000608432.5_2_2:145780810-145939776:+|nuORF;ENST00000609705.5_1_2:145780810-145938583:+|nuORF 5.230669730166228 0.5342319408533849 2 {I|L}K 2 -1 23.5 0 0 2.5202 0 0 155.0949222377929 533.1449679010374 688.2398901388303 0 0 0 0 0 0.8807196863200843 0 0 1 {I|L}K 2.5202 - 26 + NaN NaN 186973.5 NaN 11341 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14646 64.697 NaN 1590500 35 0 71683 0.261 -1 SRILFMNSCV 10 122 621.799736824019 NaN 0 621.8169555664062 PEAK HCD FTMS 0 0 0 14643 45056.78125 1 0 0 3 Carbamidomethyl (C),Oxidation (M) _SRILFM(Oxidation (M))NSC(Carbamidomethyl (C))V_ ENST00000452533.6_1_12:32896368-32896542:+|nuORF 14.838274106304384 0.3224471714378502 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 6 -1 34.399 0 0 2.7706 0 0 65.05235029142871 309.09108249898424 374.14343279041293 0 0 0 0 0 0 0 0 0.3252574989159953 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 2.7706 - 3803 + NaN NaN 333693 NaN 11342 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14647 64.7 NaN 1460900 35 0 176430 0.261 + 35497 YYFPVKNVI 9 103 571.8157670500777 1141.6169811669554 2 571.7978515625 MULTI HCD FTMS 0 0 0 14643 192421.25 0.2858017588086175 -4 0.114227294921875 4 Unmodified _YYFPVKNVI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 36.04419817259434 0.08350412372117409 2 YY{I|L}THG{I|L}Y 8 7 37.15 0 0 3.2542 0 0 0 128.10060164251493 128.10060164251493 18.187791725465893 0 0 0 0 0.3807196863200844 1.6989700043360187 0.7302046884880937 0 YY{I|L}THG{I|L}Y 3.2542 - 1018 NaN NaN 337391.2 NaN 11343 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14648 64.703 NaN 764860 35 0 111250 0.261 + -1 EPMQIILSM 9 85 539.267615202286 NaN 0 539.2787475585938 PEAK HCD FTMS 0 0 0 14643 36947.87890625 0.358521639511935 -4 0.114227294921875 5 Oxidation (M) _EPMQIILSM(Oxidation (M))_ REV__ENSG00000136425|ENST00000258930|CIB2;REV__nc|ENSG00000136425|O75838-2|CIB2;REV__nc|ENSG00000136425|O75838-3|CIB2 23.1484247019978 0.16626532474190622 2 QE{I|L}{I|L}S 5 -1 25.79 0 0 2.3957 0 0 341.1751096996907 162.02300440006096 503.1981140997517 0 0 0 0 0 0 0 0.6861818737241735 0 QE{I|L}{I|L}S 2.3957 - 127 + NaN NaN 210615.1 NaN 11344 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14649 64.707 NaN 408490 35 0 45235 0.261 + 16283 LQNLIMGLF 9 69 524.7966756140884 1047.5787982949767 2 524.7967529296875 MULTI HCD FTMS 0 0 0 14643 76569.8125 0.5495639122163344 -4 0.114227294921875 6 Unmodified _LQNLIMGLF_ ENSG00000138075|ENST00000405322|ABCG5 23.1484247019978 0.1603590852062899 2 [Q{I|L}]P[KG][{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F} 9 4 + 38.178 0 0 3.6444 3.6444 89.372 0 0 0 13.665507301258735 12.408037477650645 12.408037477650645 38.17795922477814 0 0.805462187404089 1.3010299956639813 0 0 [Q{I|L}]P[KG][{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F} 3.6444 - 97 + NaN NaN 151887.4 NaN 11345 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14650 64.71 NaN 411840 35 0 23333 0.261 -1 IYTKIMDLI 9 92 563.3149456776264 1124.6153384220527 2 563.3148803710938 MULTI HCD FTMS 0 0 0 14643 66667.8046875 0.6487445676489024 -4 0.114227294921875 7 Oxidation (M) _IYTKIM(Oxidation (M))DLI_ ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1 33.4449034751529 0.0954363425218424 2 [Y{I|L}]T{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}D{I|L}{I|L} 9 -1 + 49.408 0 0 4.3933 4.3933 84.529 0 0 0 7.469617958179242 16.478174818886373 7.469617958179242 7.469617958179242 0 1.079689690656103 1.6989700043360187 0.6549471895720985 0 [Y{I|L}]T{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}D{I|L}{I|L};[YT]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}D{I|L}{I|L} 4.3933;3.7291 -;- 212 NaN NaN 166460.6 NaN 11346 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14651 64.713 NaN 139950 35 0 19180 0.262 + 3404 EEYAMTVV 8 48 471.21783557728725 940.4211182213745 2 471.21820068359375 MULTI HCD FTMS 0 0 0 14643 47414.375 0.30188167191901166 8 -0.21619415283203125 8 Unmodified _EEYAMTVV_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 4.75600775471527 0.5349361699807423 2 VV 2 -1 20.969 0 0 2.2298 0 0 724.2730558998342 0 724.2730558998342 0 13.979400086720375 0 0 0 0 0 0 0 VV 2.2298 + + 7 NaN NaN 113462.8 NaN 11347 3302 14643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14653 64.718 NaN 631140 35 0 46519 0.327 -1 KYMDVQFDF 9 68 604.7681072670384 1207.5216616008768 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14652 270558.78125 0.07898493890324265 -17 0.45794677734375 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 59.05245873256422 0.018907022117377846 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 + 65.148 0 0 5.3952 5.3952 85.813 0 0 0 2.632192780232785 45.315337867892325 2.632192780232785 7.015449934959719 0 2.2302046884880937 0 0 0.805462187404089 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}QY{I|L}C[YE]K;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EY{I|L}C[YE]K;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[YE]C[YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[SG]{I|L}C[YE]K;{[{M(Oxidation (M))|F}D]|MM}[AG]Y{I|L}C[YE]K 5.3952;4.8142;4.6326;4.0517;3.3022;2.0096;1.8638;1.7033;1.3929;1.247 -;+;-;-;-;-;-;-;-;- + 1060 NaN NaN 181969.8 NaN 11348 3303 14652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14654 64.723 NaN 352070 35 0 40382 0.261 + 32101 VYRYESAIW 9 83 593.7989319033193 1185.5833108734384 2 593.7991333007812 MULTI HCD FTMS 0 0 0 14652 58771.203125 0.278958146825745 6 -0.1605682373046875 2 Unmodified _VYRYESAIW_ ENSG00000138400|ENST00000374412|MDH1B;nc|ENSG00000138400|Q5I0G3-2|MDH1B 14.838274106304384 0.23215694253501695 2 [{M(Oxidation (M))|F}E]SRWYSV{I|L} 9 7 + 41.385 0 0 3.4907 3.4907 86.273 0 0 0 7.147642715192504 28.285948057352286 7.147642715192504 10.969100130080559 0 0.8494850021680094 0 0.6549471895720984 0 [{M(Oxidation (M))|F}E]SRWYSV{I|L};[{M(Oxidation (M))|F}E]SR[VS]YW{I|L};[{M(Oxidation (M))|F}E]SR[{M(Oxidation (M))|F}T]TW{I|L};{[TV]|[{I|L}S]}[Y{M(Oxidation (M))|F}]RTTW{I|L};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}TTWYW{I|L};[{M(Oxidation (M))|F}E]S[PA][HV]TW{I|L};[YV][{M(Oxidation (M))|F}T]RTTW{I|L};[{M(Oxidation (M))|F}E]SR[HV]D[PS]{I|L} 3.4907;2.5655;2.3116;1.6666;1.6026;1.1606;1.1157;1.0336 -;-;-;-;-;-;-;- 400 NaN NaN 155178.6 NaN 11349 3303 14652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14655 64.726 NaN 115310 35 0 13968 0.262 + 34061 YNIEKPNI 8 42 495.76664796789674 NaN 0 495.7666015625 PEAK HCD FTMS 0 0 0 14652 9046.8251953125 0.19218524120417826 1 -0.01294708251953125 3 Unmodified _YNIEKPNI_ REV__tr|U7SM08|U7SM08_FUSNUProbableD-serinedehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dsdAPE=3SV=1 24.020572477871973 0.3822186893390034 2 {I|L} 1 -1 16.99 0 0 1.717 0 0 599.3279909047404 274.0827730768188 873.4107639815593 0 0 0 0 0 1 0 0 0 {I|L} 1.717 + + 2 + NaN NaN 123416.3 NaN 11350 3303 14652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14657 64.731 NaN 1118800 35 0 104500 0.327 + 10955 IYDKFIAQL 9 87 555.8134001989181 NaN 0 555.8135375976562 PEAK HCD FTMS 0 0 0 14656 501833.8125 0.6308335086665411 -2 0.04238128662109375 1 Unmodified _IYDKFIAQL_ ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1 93.93812099017352 5.613205124637636E-05 2 QA{I|L}{M(Oxidation (M))|F}KD 6 8 64.003 0 0 5.7681 0 0 131.0956575855924 273.1241793689082 404.2198369545006 0 0 0 0 0 2.805462187404089 0 0.25 0.3807196863200844 QA{I|L}{M(Oxidation (M))|F}KD 5.7681 - 334 + NaN NaN 261811.3 NaN 11351 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14658 64.736 NaN 1314900 35 0 163310 0.261 + 5192 FFDAELSQM 9 90 552.2391290246032 1102.4637051160064 2 552.2396240234375 MULTI HCD FTMS 0 0 0 14656 326810.53125 0.09077553396264935 -12 0.313751220703125 2 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 157.7952019732125 5.857147217999733E-07 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 89.751 0 0 8.1409 8.1409 92.24 0 0 0 4.762036441594191 75.1467456259818 4.762036441594191 9.208187539523749 0 2.9876954943324545 0 1.4802046884880937 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[YC]|[HE]}EAD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[SA]|[TG]}E{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}];{[QS]|[NT]}PY{M(Oxidation (M))|F}AD[Y{I|L}] 8.1409;7.3057;4.9153;4.08;3.8949;2.6255;2.4365;2.3994;2.3023;1.983 +;-;-;-;-;-;-;-;-;- + 1202 NaN NaN 289076.8 NaN 11352 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14659 64.739 NaN 514400 35 0 48823 0.261 + 31494 VYFPEELHR 9 73 595.3031539998525 NaN 0 595.2894287109375 PEAK HCD FTMS 0 0 0 14656 15707.66796875 0.934387227971831 -1 0.01294708251953125 3 Unmodified _VYFPEELHR_ ENSG00000100292|ENST00000216117|HMOX1 10.823927491677226 0.2427956001690155 2 T{M(Oxidation (M))|F}VDRVY 7 8 22.159 0 0 1.8643 0 0 64.02684915944549 241.0981386774047 305.1249878368502 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}VDRVY 1.8643 - 1302 + NaN NaN 166803.2 NaN 11353 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14660 64.743 NaN 267370 35 0 26524 0.261 + 21570 PYMAKFVVF 9 62 559.2909766375227 1116.5674003418453 2 559.2913818359375 MULTI HCD FTMS 0 0 0 14656 126514.359375 0.332350555889264 13 -0.3432159423828125 4 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 50.855029805455786 0.030374663808198754 2 [{M(Oxidation (M))|F}V]VK[EC]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 6 + 37.91 0 0 3.3952 3.3952 87.956 0 0 0 0.24613421077092568 6.940834170577908 0.24613421077092568 20.740312677277192 0 1 0 0.3807196863200844 0 [{M(Oxidation (M))|F}V]VK[EC]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]VK[HV]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 3.3952;1.5377 -;- 156 NaN NaN 143261.9 NaN 11354 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14661 64.746 NaN 310490 35 0 53036 0.261 + 8381 GYMEGYYTF 9 77 573.7261901080524 1145.4378272829047 2 573.7257080078125 MULTI HCD FTMS 0 0 0 14656 78843.6171875 0.20252388288785897 -4 0.09476470947265625 5 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 49.93300154707207 0.03166451819912738 2 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 54.452 0 0 4.7538 4.7538 89.381 0 0 0 4.565104495087354 33.48267590463735 4.565104495087354 19.490925311194175 0 2.305462187404089 0 0.3807196863200844 0 [YT]CEGYYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[MS]|[{M(Oxidation (M))|F}A]}GYYT{M(Oxidation (M))|F};[YT]CEGTYY{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SAA{[ES]|[DT]|[{I|L}C]}EE[YG];{[CT]|[{M(Oxidation (M))|F}G]}[QT]{[ES]|[DT]|[{I|L}C]}EE[YG] 4.7538;3.0522;1.3669;1.3202;0.74615 -;-;-;-;- 184 NaN NaN 148555.6 NaN 11355 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14662 64.749 NaN 200690 35 0 18552 0.261 + 11857 KFAEEFYSF 9 53 584.2714072380124 1166.5282615428248 2 584.2708740234375 MULTI HCD FTMS 0 0 0 14656 33699.55078125 0.03165495710202989 25 -0.66680908203125 6 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 23.789781309258295 0.1548179064208189 2 [Y{I|L}]AAGE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 10 4 + 58.822 0 0 5.0425 5.0425 82.628 0 0 0 13.46787486224656 40.86365002801443 13.46787486224656 0.5115252244738144 0 1.5 1.5228787452803376 0 0 [Y{I|L}]AAGE{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};[Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[YR]EG[RP]{M(Oxidation (M))|F} 5.0425;4.9987;1.0776 -;-;- 75 NaN NaN 132404.4 NaN 11356 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14663 64.753 NaN 154420 35 0 25278 0.263 + 11665 IYVPRGAV 8 45 437.76140699760583 NaN 0 437.7263488769531 PEAK HCD FTMS 0 0 0 14656 5058.13818359375 0.1950310756164422 -1 0.01294708251953125 7 Unmodified _IYVPRGAV_ REV__ENST00000490927.5_1_2:175260481-175264666:+|nuORF 8.593279151180031 0.38822285293237185 2 E 1 -1 6.9897 0 0 0.80019 0 0 165.1487811697644 576.294753786905 741.4435349566693 0 0 0 0 0 0 0 0 0 E 0.80019 - 2 + NaN NaN 114009.4 NaN 11357 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14664 64.756 NaN 198580 35 0 36186 0.261 -1 TAMDVVYAL 9 37 499.7461376028678 997.4777222725356 2 499.7464599609375 MULTI HCD FTMS 0 0 0 14656 34357.3984375 0.3524949146597427 -2 0.04238128662109375 8 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 15.847184025352803 0.2234401846867398 2 GVYA{I|L} 5 -1 41.058 0 0 4.1162 0 0 476.2059498517594 0 476.2059498517594 0 41.05774396488272 0 0 0 1 0 0 0 GVYA{I|L} 4.1162 - 26 NaN NaN 134969.6 NaN 11358 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14665 64.759 NaN 94467 35 0 14116 0.261 + 11860 KFCKGLLFCFF 11 43 451.5681435930187 NaN 0 451.5680236816406 PEAK HCD FTMS 0 0 0 14656 7055.7529296875 0.20610752372845384 -9 0.21849822998046875 9 Unmodified _KFCKGLLFCFF_ REV__ENSG00000088035|ENST00000263440|ALG6 1.4551175022131473 0.3379923941668102 2 A 1 -1 5.4846 0 0 0.60864 0 0 665.0052466813515 162.05603967838127 827.0612863597328 0 0 0 0 0 0 0 0 0 A 0.60864 - 3 + NaN NaN 99695.1 NaN 11359 3304 14656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14667 64.764 NaN 1275400 35 0 109240 0.327 + 35498 YYFPVKNVI 9 97 571.8157670500777 1141.6169811669554 2 571.8160400390625 MULTI HCD FTMS 0 0 0 14666 509276.0625 0.7564237025880843 -1 0.0328369140625 1 Unmodified _YYFPVKNVI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 77.98433622928108 0.006504613272346738 2 YY{M(Oxidation (M))|F}[VP]{[NV]|[RG]}K{I|L} 9 2 + 52.342 0 0 4.5849 4.5849 90.159 0 0 0 25.642492736872597 37.73773107713893 25.642492736872597 32.403626894942434 0 1.3494850021680094 2 0 0.3494850021680094 YY{M(Oxidation (M))|F}[VP]{[NV]|[RG]}K{I|L};[Y{M(Oxidation (M))|F}]Y[VP]{[NV]|[RG]}K{I|L} 4.5849;1.7465 -;- 613 NaN NaN 292238.3 NaN 11360 3305 14666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14668 64.768 NaN 355900 35 0 22950 0.261 + -1 LYLGISCLL 9 85 526.295466145762 1050.576379358324 2 526.2823486328125 MULTI HCD FTMS 0 0 0 14666 7538.32275390625 0.15244304271731032 9 -0.245758056640625 2 Carbamidomethyl (C) _LYLGISC(Carbamidomethyl (C))LL_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|222|3|anti-sense 18.13498045792455 0.20367413111508956 2 {I|L}YDDGS{I|L} 7 -1 34.289 0 0 3.2638 0 0 269.185350486525 0 269.185350486525 0 12.597499264297696 0 0 0 0 0 0 0 {I|L}YDDGS{I|L} 3.2638 - 618 NaN NaN 165594.4 NaN 11361 3305 14666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14669 64.772 NaN 178850 35 0 16331 0.261 + 11072 IYGPIESTI 9 56 496.7686972720235 991.522841610847 2 497.2591857910156 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IYGPIESTI_ ENSG00000163751|ENST00000296046|CPA3 34.10243960390752 0.09241788333544565 2 EST{I|L} 4 5 37.167 0 0 3.7485 0 0 543.3062550175935 0 543.3062550175935 0 22.562893943202624 0 0 0 1 0 0 0 + EST{I|L} 3.7485 + + 96 NaN NaN 117958 NaN 11362 3305 14666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14670 64.775 NaN 325410 35 0 34788 0.261 -1 FPAGYMYPSM 10 62 590.2458846262415 1178.477216319283 2 590.7676391601562 MULTI HCD FTMS 0 0 0 14666 49935.3515625 0.3033721608184642 -11 0.2874908447265625 4 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 39.957323273324995 0.14577711486213385 2 MYPS{M(Oxidation (M))|F} 5 -1 40.054 0 0 3.3988 0 0 535.2423573224625 0 535.2423573224625 0 19.023473807479675 0 0 0 1.2887254899964358 0 0 0 MYPS{M(Oxidation (M))|F} 3.3988 + + 122 NaN NaN 144028.6 NaN 11363 3305 14666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14672 64.78 NaN 2128100 35 0 264890 0.327 + 11869 KFDDIRIYF 9 107 608.8214915987583 1215.6284302643164 2 608.8218994140625 MULTI HCD FTMS 0 0 0 14671 1606210.5 1 0 0 1 Unmodified _KFDDIRIYF_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 125.18120922955335 0.0008972141377140722 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}R{I|L}Y{M(Oxidation (M))|F} 9 0 + 94.886 0 0 7.8055 7.8055 88.867 0 0 0 4.191088978197968 4.191088978197968 4.191088978197968 4.191088978197968 0 2 0 1.2198565171985374 2.254432191740108 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}R{I|L}Y{M(Oxidation (M))|F};K{[CP]|[EA]}{I|L}R{I|L}DDKE;[Y{I|L}]ND{I|L}R{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}RY{I|L}{M(Oxidation (M))|F};[Y{I|L}]ND{I|L}RY{I|L}{M(Oxidation (M))|F};[Y{I|L}]GGD{I|L}R{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DQQK{I|L}Y{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]D{I|L}R{I|L}Y{M(Oxidation (M))|F};K{[CP]|[EA]}{I|L}KQQDKE;[Y{I|L}]GGD{I|L}RY{I|L}{M(Oxidation (M))|F} 7.8055;7.4607;7.2869;6.5085;5.99;5.9125;5.4367;5.3397;5.092;4.6156 +;-;-;-;-;-;-;-;-;- + 2452 NaN NaN 436029.5 NaN 11364 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14673 64.785 NaN 1239200 35 0 288070 0.262 + 24707 RYLTVAAVF 9 76 520.3003137195551 1038.5860745059101 2 520.3004150390625 MULTI HCD FTMS 0 0 0 14671 638013.25 0.017019281698794207 39 -1.0165863037109375 2 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 36.12702656103203 0.08312389501731911 2 AAV{M(Oxidation (M))|F} 4 5 49.68 0 0 4.7835 0 0 632.3654828554893 0 632.3654828554893 0 42.69077524932108 0 0 0 1.774227503252014 0 0 0 + AAV{M(Oxidation (M))|F} 4.7835 + + 52 NaN NaN 277351.3 NaN 11365 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14674 64.788 NaN 557660 35 0 48497 0.261 + 32177 VYSRTFTWL 9 70 586.8083673034429 1171.6021816736857 2 586.80859375 MULTI HCD FTMS 0 0 0 14671 418947.0625 0.28114676910470954 11 -0.294189453125 3 Unmodified _VYSRTFTWL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 69.33821966488729 0.009302356455414924 2 [YV]SRT{M(Oxidation (M))|F}TW{I|L} 9 0 + 98.382 0 0 8.3972 8.3972 89.396 0 0 0 3.213337517843655 3.213337517843655 3.213337517843655 3.213337517843655 0 2.305462187404089 2 0.8494850021680094 0 + + [YV]SRT{M(Oxidation (M))|F}TW{I|L};VYR{M(Oxidation (M))|F}TSTW{I|L};[YV]SRTWT{M(Oxidation (M))|F}{I|L};[YV]SR{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{I|L};[YV]SR{[WS]|[C(Carbamidomethyl (C)){I|L}]}YV{I|L};[YV][VG]{M(Oxidation (M))|F}[RD]G{M(Oxidation (M))|F}{I|L};V[HV]{[ET]|[MV]}TRSM{I|L} 8.3972;8.123;5.8633;4.7881;4.554;4.4965;2.729 +;-;-;-;-;-;- + 1522 NaN NaN 179095.9 NaN 11366 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14675 64.792 NaN 379040 35 0 35909 0.261 + 6519 FPISEETIKL 10 73 588.8292095670373 1175.6438662008745 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14671 297937.625 0.15269507821078984 -10 0.254669189453125 4 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 79.42699986076722 0.006415178144277549 2 {I|L}M{I|L}SEET{I|L} 8 4 97.446 0 0 8.2888 0 0 0 256.16645227603755 256.16645227603755 82.72328715070294 0 0 0 0 2.4361818737241734 1.5228787452803376 0.6989700043360187 0 {I|L}M{I|L}SEET{I|L} 8.2888 - 251 + NaN NaN 155066.7 NaN 11367 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14676 64.795 NaN 100190 35 0 17129 0.264 + 31185 VVGSDVEL 8 36 409.2187508303881 816.4229487275762 2 409.21881103515625 MULTI HCD FTMS 0 0 0 14671 167394.9375 1 0 0 5 Unmodified _VVGSDVEL_ ENSG00000160867|ENST00000292408|FGFR4;ENST00000508139.1_1_5:176518793-176520368:+|nuORF;nc|ENSG00000160867|P22455-2|FGFR4 42.09456458481378 0.20402248593209013 2 DVE{I|L} 4 4 43.849 0 0 5.3709 0 0 342.18980605293126 0 342.18980605293126 0 29.245083394485064 0 0 0 1.7134679910804405 0 0.3807196863200844 0 + DVE{I|L} 5.3709 + + 55 NaN NaN 102136.6 NaN 11368 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14677 64.798 NaN 105060 35 0 11859 0.261 -1 0 43 459.27975117923575 458.27247471263576 1 459.27996826171875 MULTI HCD FTMS 0 0 0 14671 88256.0546875 0.47343708169531823 -40 1.1081275939941406 6 NaN NaN 2 D 1 -1 0.9691 0 0 0.21147 0 0 123.11278950931388 217.10808740787346 340.22087691718735 0 0 0 0 0 0 0 0 0 D 0.21147 - 2 + NaN NaN 113038.6 NaN 11369 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14678 64.802 NaN 159930 35 0 31976 0.261 + -1 PCHCGPHC 8 35 455.6602699837403 909.3059870342806 2 455.66033935546875 MULTI HCD FTMS 0 0 0 14671 112344.3515625 1 0 0 7 Carbamidomethyl (C) _PC(Carbamidomethyl (C))HCGPHC_ REV__nc|ENSG00000197558|A2VEC9|SSPOP 0.7936320650641473 0.540814922690045 2 [C(Carbamidomethyl (C))M]T 3 -1 10.942 0 0 1.2033 0 0 0 514.1687105768186 514.1687105768186 5.45757490560675 0 0 0 0 0.5 0 0 0 [C(Carbamidomethyl (C))M]T 1.2033 - 8 + NaN NaN 118763.7 NaN 11370 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14679 64.805 NaN 128350 35 0 10644 0.261 -1 IYWWILLC 8 48 583.8079806780954 1165.6014084229907 2 583.810546875 MULTI HCD FTMS 0 0 0 14671 54078.0625 0.23736807401887178 13 -0.34995269775390625 8 Carbamidomethyl (C) _IYWWILLC(Carbamidomethyl (C))_ nc|ENSG00000144339|Q9UIK5-3|TMEFF2 11.114462752807354 0.5120171699125776 2 {I|L}Y 2 -1 44.776 0 0 3.8415 0 0 0 886.431242295147 886.431242295147 10.162034331349972 0 0 0 0 0.3807196863200844 2 0 0 {I|L}Y 3.8415 + + 26 + NaN NaN 116464.9 NaN 11371 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14680 64.808 NaN 219170 35 0 23773 0.264 + 19589 NTFDFIKVLR 10 48 418.23955593996527 1251.696838420096 3 418.2391662597656 MULTI HCD FTMS 0 0 0 14671 87083.65625 0.8066858181468175 -2 0.0490264892578125 9 Unmodified _NTFDFIKVLR_ ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 11.631370582801994 0.4023161008015784 2 NT{M(Oxidation (M))|F}D 4 6 47.155 0 0 3.7673 0 0 0 771.4887988917686 771.4887988917686 33.17532531436136 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 + NT{M(Oxidation (M))|F}D 3.7673 + + 12 + NaN NaN 117415.1 NaN 11372 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14681 64.812 NaN 241030 35 0 27644 0.261 + 29941 VFFHFLVI 8 59 511.29557134225917 1020.5765897513184 2 511.7877197265625 MULTI HCD FTMS 0 0 0 14671 9163.11328125 0.5605327572262989 -3 0.06197357177734375 10 Unmodified _VFFHFLVI_ nc|ENSG00000112144|Q9UPZ9-2|CILK1 17.086550045450526 0.4680768486079041 2 V{I|L}{M(Oxidation (M))|F} 3 6 21.427 0 0 2.0995 0 0 643.3788491280746 0 643.3788491280746 0 3.863781092484686 0 0 0 0 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.0995 - 70 + NaN NaN 124915.6 NaN 11373 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14682 64.815 NaN 99169 35 0 15296 0.261 + 5146 FFAGFLLF 8 49 481.2617552520195 NaN 0 481.2618713378906 PEAK HCD FTMS 0 0 0 14671 23833.078125 0.5093894357889429 -1 0.0161895751953125 11 Unmodified _FFAGFLLF_ REV__ENSG00000214814|ENST00000522917|FER1L6 6.354104778181461 0.38822285293237185 2 K 1 -1 4.6041 0 0 0.47934 0 0 655.1480089397828 174.23679529361564 829.3848042333984 0 0 0 0 0 0 0 0 0 K 0.47934 - 2 + NaN NaN 109681.8 NaN 11374 3306 14671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14684 64.82 NaN 1070900 35 0 412620 0.327 + 20594 PEKYTRIYF 9 53 406.2167902515407 1215.6285413548221 3 406.2169494628906 MULTI HCD FTMS 0 0 0 14683 385442.90625 0.41203431321785133 1 -0.0295562744140625 1 Unmodified _PEKYTRIYF_ REV__ENSG00000118402|ENST00000369816|ELOVL4 24.881564428377168 0.14538514251145815 2 {I|L}R{I|L}Y{M(Oxidation (M))|F} 5 -1 57.959 0 0 4.7678 0 0 505.2170280914285 0 505.2170280914285 0 57.95880017344075 0 0 0 2 0 0 0 {I|L}R{I|L}Y{M(Oxidation (M))|F} 4.7678 - 41 + NaN NaN 261111.2 NaN 11375 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14685 64.824 NaN 810440 35 0 106130 0.261 -1 NSPRMDLTL 9 67 531.7663055313462 1061.5180581294924 2 531.7665405273438 MULTI HCD FTMS 0 0 0 14683 284301.15625 0.4851293754837889 1 -0.0295562744140625 2 Oxidation (M) _NSPRM(Oxidation (M))DLTL_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant 38.175570920033316 0.07371992880350783 2 D{I|L}T{I|L} 4 -1 48.22 0 0 4.5425 0 0 601.2636585919937 0 601.2636585919937 0 23.632359729264532 0 0 0 1.274227503252014 0 0.805462187404089 0 D{I|L}T{I|L} 4.5425 + + 241 NaN NaN 208815.4 NaN 11376 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14686 64.828 NaN 549040 35 0 307880 0.262 -1 0 49 427.30262712631514 852.5907013194303 2 427.3026123046875 MULTI HCD FTMS 0 0 0 14683 214680.234375 0.24164402217881784 -39 1.0729484558105469 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.5364 0 0 687.5121470975538 0 687.5121470975538 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5364 - 7 + NaN NaN 176185.1 NaN 11377 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14687 64.831 NaN 764620 35 0 157430 0.261 + 8382 GYMEGYYTF 9 93 573.7261901080524 1145.4378272829047 2 573.7261962890625 MULTI HCD FTMS 0 0 0 14683 155552.21875 0.39956359762329835 -1 0.0395660400390625 4 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 125.62461146993168 0.0008703235425492373 2 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 89.759 0 0 7.8363 7.8363 92.733 0 0 0 10 11.891880102955596 10 10 0 2.742992819099939 1.3979400086720375 1.1237125054200234 0 [YT]CEGYYT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EGYYT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[YT]{M(Oxidation (M))|F}[YG]E{M(Oxidation (M))|F}[YG];YY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[YE]T{M(Oxidation (M))|F} 7.8363;6.9632;4.7968;3.7155;2.9627;1.8814;1.7358 -;+;-;-;-;-;- + 295 NaN NaN 207356.9 NaN 11378 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14688 64.835 NaN 471230 35 0 63178 0.261 + 17350 LYPYLNEKL 9 83 576.8183623005181 1151.622171667836 2 576.8181762695312 MULTI HCD FTMS 0 0 0 14683 93224.015625 0.3694866475526236 -1 0.0395660400390625 5 Unmodified _LYPYLNEKL_ REV__ENSG00000136631|ENST00000644510|VPS45;REV__nc|ENSG00000136631|Q9NRW7-2|VPS45 51.629811660486645 0.02929079705179888 2 {I|L}YST[W{I|L}]EK{I|L} 9 -1 + 79.226 0 0 6.8795 6.8795 88.529 0 0 0 24.0087609599289 7.530586141042534 7.530586141042534 7.530586141042534 0 2.2971062485323515 2 1.1694451763165201 0 {I|L}YST[W{I|L}]EK{I|L};[Y{I|L}]ST[W{I|L}]EK{I|L};{I|L}Y[QP][YV]EK{I|L};[Y{I|L}][QP][YV]EK{I|L};[WE]{I|L}{I|L}W[RH]{I|L} 6.8795;6.2256;4.8699;4.7067;0.12652 -;-;-;-;- 238 + NaN NaN 181741.1 NaN 11379 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14689 64.838 NaN 319080 35 0 50983 0.261 + 5357 FFYYDQDQ 8 69 563.2301992726352 1124.4458456120703 2 563.2305297851562 MULTI HCD FTMS 0 0 0 14683 57483.96484375 0.12478993487879483 -14 0.35947418212890625 6 Unmodified _FFYYDQDQ_ REV__ENSG00000099338|ENST00000409235|CATSPERG;REV__ENST00000412458.6_1_19:38845366-38860119:+|nuORF;REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF 21.74664581756881 0.4337896562907935 2 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 55.526 0 0 4.9381 0 0 315.0868397443375 0 315.0868397443375 0 36.062376115103945 0 0 0 1.5356668758921828 0 0.3494850021680094 0 S{I|L}EAD{M(Oxidation (M))|F}E 4.9381 - 134 NaN NaN 143054.4 NaN 11380 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14690 64.841 NaN 337000 35 0 16368 0.261 + 6571 FPLDLDVKM 9 98 547.2840734785718 1092.5535940239436 2 547.2842407226562 MULTI HCD FTMS 0 0 0 14683 40960.26953125 0.054184053799741734 -27 0.7297134399414062 7 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 43.981846655682396 0.04706587046877104 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F} 9 2 + 64.769 0 0 5.9283 5.9283 90.876 0 0 0 48.15872314631916 16.478174818886373 16.478174818886373 16.46591250700361 0 1.4749073637206092 0 0 0 {M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]M[{I|L}T];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}E[VP]{I|L}[SG]VV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]D{I|L}PE;{M(Oxidation (M))|F}E[VP]{I|L}[SG]{I|L}[MT];{M(Oxidation (M))|F}E[VP]{I|L}[SG]M[{I|L}T] 5.9283;4.4212;4.0469;3.4586;3.256;3.1725;2.2421;1.7045;1.2795;1.077 -;-;-;-;-;+;-;-;-;- + 1034 + NaN NaN 138875.3 NaN 11381 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14691 64.845 NaN 383310 35 0 27864 0.261 -1 IYANNSMTRA 10 74 578.7749707131277 NaN 0 578.794921875 PEAK HCD FTMS 0 0 0 14683 8291.392578125 0.2379457777334355 -1 0.0395660400390625 8 Oxidation (M) _IYANNSM(Oxidation (M))TRA_ ENST00000250489.8_1_14:20929623-20929770:-|nuORF 10.073929032068715 0.33156240198919784 2 ANM{M(Oxidation (M))|F}E 5 -1 7.14 0 0 0.6179 0 0 276.1079728092977 284.17279993228755 560.2807727415852 0 0 0 0 0 0 0 0 0 ANM{M(Oxidation (M))|F}E 0.6179 - 66 + NaN NaN 161088.8 NaN 11382 3307 14683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14693 64.849 NaN 1157400 35 0 109200 0.327 + 29102 TYGEIFEKF 9 111 567.2792195549672 1132.5438861767343 2 567.2792358398438 MULTI HCD FTMS 0 0 0 14692 585827 0.027862518269369335 70 -1.7796630859375 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 90.13494162714682 0.004522430935000059 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 73.818 0 0 6.5179 6.5179 91.216 0 0 0 17.174165578762484 13.038792677969141 13.038792677969141 13.038792677969141 0 2.2619229975844686 1.6989700043360187 1.2658715643802767 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};TYGE{[TV]|[{I|L}S]}V{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{[QV]|[N{I|L}]|[RA]|[KV]}[YV];[RH]E[C(Carbamidomethyl (C))K]EK{M(Oxidation (M))|F};{[MG]|[TS]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[RH]E[C(Carbamidomethyl (C))K][VS]A{M(Oxidation (M))|F};[RH]G[C(Carbamidomethyl (C))D]{M(Oxidation (M))|F}KT{I|L} 6.5179;5.3666;5.0014;3.8502;3.0011;2.748;2.3703;2.3225;2.226;1.6536 -;-;-;-;-;-;-;-;-;- 1425 NaN NaN 282072.4 NaN 11383 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14694 64.854 NaN 1253800 35 0 67402 0.261 + 22714 QYASAFHFL 9 94 542.2667660525767 1082.5189791719533 2 542.266845703125 MULTI HCD FTMS 0 0 0 14692 482844.4375 0.5569624204641782 2 -0.0556640625 2 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 131.29775728308752 0.0005262696486345744 2 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 8 6 67.759 0 0 6.2594 0 0 165.07899672675939 0 165.07899672675939 0 35.561383883823225 0 0 0 0.8921590589602533 0 1.035666875892183 0 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 6.2594 - 2206 NaN NaN 300298.3 NaN 11384 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14695 64.857 NaN 427430 35 0 96498 0.262 -1 LLSICLDD 8 64 467.2332696268085 932.4519863204171 2 467.2334289550781 MULTI HCD FTMS 0 0 0 14692 560416.5625 0.6651116649753295 2 -0.0556640625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLSICLDD_ ENST00000414195.6_1_2:145780810-145939628:+|nuORF;ENST00000420472.1_1_2:145780789-145929735:+|nuORF;ENST00000451478.5_1_2:145780789-145939807:+|nuORF;ENST00000595686.5_1_2:145693006-145939807:+|nuORF;ENST00000596034.5_2_2:145780810-145939776:+|nuORF;ENST00000599187.5_1_2:145875193-145939807:+|nuORF;ENST00000602041.5_2_2:145875217-145939776:+|nuORF;ENST00000605238.3_1_2:145929591-145938821:+|nuORF;ENST00000608432.5_2_2:145780810-145939776:+|nuORF;ENST00000609705.5_1_2:145780810-145938583:+|nuORF 2.577480529830294 0.5381683276125971 2 {I|L}{I|L} 2 -1 10.969 0 0 1.1764 0 0 59.04829895694372 644.2245393782819 703.2728383352256 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1764 + + 9 + NaN NaN 150738.4 NaN 11385 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14696 64.861 NaN 1005500 35 0 153560 0.261 + 20143 NYISGIQTI 9 84 504.771661527656 1007.5287701221121 2 504.7718811035156 MULTI HCD FTMS 0 0 0 14692 358394.65625 0.28685263976495984 7 -0.18003082275390625 4 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 107.09958533191995 0.0034159042678574016 2 [YN]{I|L}SAVQT{I|L} 9 2 + 86.35 0 0 8.5705 8.5705 92.861 0 0 0 24.366130211356072 47.43218887423175 24.366130211356072 9.208187539523749 0 2.1816146521464015 1.5228787452803376 0.6694451763165201 0.6747425010840047 [YN]{I|L}SAVQT{I|L};[YN]{I|L}SAV[AG]T{I|L};[YN]{I|L}[KT]QE{I|L};[YN]{I|L}S[VS]{[NV]|[RG]}{I|L};[YN]{I|L}S[VS][{I|L}V]N;[YN]{I|L}[KT][AG]E{I|L};[QT]{I|L}{[VA]|[{I|L}G]}S{I|L}YN;[QT]{I|L}{[VA]|[{I|L}G]}S[YN]{I|L} 8.5705;7.6566;4.3285;4.1296;3.8308;3.4092;2.2635;0.7134 -;-;-;-;-;-;-;- 467 NaN NaN 238985 NaN 11386 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14697 64.864 NaN 1072700 35 0 46026 0.261 + 27198 SYNNFFRMF 9 106 621.2740136938751 1240.53347445455 2 621.2742309570312 MULTI HCD FTMS 0 0 0 14692 359320.0625 0.07500127065055012 25 -0.6367874145507812 5 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 100.0907132914201 0.004261551473353346 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.416 0 0 6.4824 6.4824 89.365 0 0 0 9.806358358995269 63.577957114533916 9.806358358995269 9.208187539523749 0 2.9247425010840047 0 0.566901560044258 1.5356668758921828 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GSN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GSGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}R[QP]SNN[MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NN[MT] 6.4824;5.7401;5.7401;5.0986;4.3875;4.192;3.746;3.4497;2.6909;2.0607 +;-;-;-;-;-;-;-;-;- + 4925 NaN NaN 250670.3 NaN 11387 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14698 64.867 NaN 283140 35 0 28586 0.261 + -1 GSQSLHIGELC 11 59 600.7878005537102 1199.5610481742203 2 600.7883911132812 MULTI HCD FTMS 0 0 0 14692 133117.421875 0.604873584873778 3 -0.08524322509765625 6 Carbamidomethyl (C) _GSQSLHIGELC(Carbamidomethyl (C))_ REV__ENSG00000197386|ENST00000355072|HTT;REV__ENST00000510626.5_1_4:3190651-3210559:+|nuORF 20.41453444215458 0.279209903849948 2 SVSTS 5 -1 29.909 0 0 2.4934 0 0 272.1145418416036 463.21006189517817 735.3246037367818 0 0 0 0 0 0.9247425010840047 0 0.3494850021680094 0 SVSTS 2.4934 - 71 + NaN NaN 138318.4 NaN 11388 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14699 64.871 NaN 318740 35 0 35807 0.261 + -1 EPMQIILSM 9 55 539.267615202286 NaN 0 539.27880859375 PEAK HCD FTMS 0 0 0 14692 71224.390625 0.6911218196017738 2 -0.0556640625 7 Oxidation (M) _EPMQIILSM(Oxidation (M))_ REV__ENSG00000136425|ENST00000258930|CIB2;REV__nc|ENSG00000136425|O75838-2|CIB2;REV__nc|ENSG00000136425|O75838-3|CIB2 14.838274106304384 0.2220448417561729 2 {I|L}{I|L}S 3 -1 23.06 0 0 2.1421 0 0 598.2747253407396 162.02216516666252 760.296890507402 0 0 0 0 0 0.5 0 0.4247425010840047 0 {I|L}{I|L}S 2.1421 + + 26 + NaN NaN 127122.7 NaN 11389 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14700 64.874 NaN 187840 35 0 14260 0.261 + 11752 KDMQEYFDF 9 59 611.7574773502996 1221.5004017673991 2 611.7589721679688 MULTI HCD FTMS 0 0 0 14692 44488.9921875 0.16735501195344452 -13 0.33664703369140625 8 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 50.138 0 0 4.1046 0 0 305.13609511543126 0 305.13609511543126 0 38.29791807517326 0 0 0 2.2302046884880937 0 0 0 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1046 - 154 NaN NaN 121075.8 NaN 11390 3308 14692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14702 64.879 NaN 2855000 35 0 431920 0.327 + 5193 FFDAELSQM 9 94 552.2391290246032 1102.4637051160064 2 552.2396850585938 MULTI HCD FTMS 0 0 0 14701 1388860.875 0.38577271988678424 -7 0.19000244140625 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 KDAE{I|L}SQ{M(Oxidation (M))|F} 8 2 102.54 0 0 9.301 0 0 166.04104994198138 0 166.04104994198138 0 67.27009619867565 0 0 0 3.1747425010840047 0 1.7491348669726232 1.3851518780601921 KDAE{I|L}SQ{M(Oxidation (M))|F} 9.301 - 3472 + NaN NaN 519931 NaN 11391 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14703 64.883 NaN 1864500 35 0 190380 0.261 + 13268 KYMDINFDF 9 92 604.7681072670384 1207.5216616008768 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14701 903135.75 0.26365480249990675 -11 0.304229736328125 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 128.57297698046145 0.0006915168155602875 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 85.555 0 0 7.0852 7.0852 90.42 0 0 0 3.2568864632742844 59.916315580739976 3.2568864632742844 9.208187539523749 0 2.5451140161145327 0 1 1.2302046884880937 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N[Y{I|L}]{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D[Y{I|L}]{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[VP]PQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}DK{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[SG]V{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 7.0852;6.3226;5.8725;5.2149;5.1099;4.1831;4.0373;3.8277;3.8103;3.3607 +;-;-;-;-;-;-;-;-;- + 3489 NaN NaN 371555.4 NaN 11392 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14704 64.887 NaN 873030 35 0 64932 0.261 + -1 LYGSVMLAQI 10 97 555.7955880498855 NaN 0 555.8134155273438 PEAK HCD FTMS 0 0 0 14701 6090.39013671875 0.2870872811581671 -1 0.02947235107421875 3 Oxidation (M) _LYGSVM(Oxidation (M))LAQI_ REV__ENSG00000137571|ENST00000260126|SLCO5A1;REV__ENST00000528658.1_1_8:70673979-70744908:-|nuORF;REV__ENST00000532388.5_1_8:70617264-70744908:-|nuORF;REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;REV__SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant 25.399314129420986 0.2368981700431367 2 QA{I|L}{M(Oxidation (M))|F}KD 6 -1 30.438 0 0 2.7432 0 0 131.05933537494894 273.1243629435082 404.1836983184571 0 0 0 0 0 0 0 0 0.3807196863200844 QA{I|L}{M(Oxidation (M))|F}KD 2.7432 - 326 + NaN NaN 229113.1 NaN 11393 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14705 64.89 NaN 822280 35 0 45394 0.261 + 24418 RYKVFVDLF 9 111 593.8344296395811 1185.6543063459621 2 593.8346557617188 MULTI HCD FTMS 0 0 0 14701 144769.328125 0.5696628856323874 1 -0.02619171142578125 4 Unmodified _RYKVFVDLF_ ENSG00000151790|ENST00000536354|TDO2 27.628801355627647 0.12213550946336599 2 [YR]KV{M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F} 9 0 + 59.442 0 0 5.0134 5.0134 84.161 0 0 0 3.65279269351241 39.16665953434121 3.65279269351241 4.286662482156345 0 0.5 0 0.3807196863200844 0 + + [YR]KV{M(Oxidation (M))|F}VD{I|L}{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}DV{I|L}{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}VEV{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YR]KV{I|L}D{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YR]KV{M(Oxidation (M))|F}{I|L}DV{M(Oxidation (M))|F};[YR]KVEV{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YR]KV{I|L}DV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YR]KV{I|L}{M(Oxidation (M))|F}DV{M(Oxidation (M))|F};[YR]K{I|L}VD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.0134;4.6519;4.0167;3.6552;3.3604;3.1733;2.958;2.7709;2.7709;2.7041 +;-;-;-;-;-;-;-;-;- + 1896 NaN NaN 209849.1 NaN 11394 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14706 64.894 NaN 124640 35 0 16383 0.262 + 16924 LYGPSSVSF 9 39 478.7397423026586 955.4649316721172 2 478.73974609375 MULTI HCD FTMS 0 0 0 14701 42917.7109375 0.4440026348544364 1 -0.02619171142578125 5 Unmodified _LYGPSSVSF_ ENSG00000149257|ENST00000358171|SERPINH1 30.636539890814138 0.10832830463492794 2 SVS{M(Oxidation (M))|F} 4 5 56.186 0 0 5.8804 0 0 517.2529164044937 0 517.2529164044937 0 56.18562527100117 0 0 0 2 0 0.4247425010840047 0 + SVS{M(Oxidation (M))|F} 5.8804 + + 50 NaN NaN 99791.3 NaN 11395 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14707 64.897 NaN 549990 35 0 85595 0.261 + 31667 VYKAFVMETF 10 71 617.8125004923195 1233.6104480514389 2 617.812744140625 MULTI HCD FTMS 0 0 0 14701 28681.171875 0.3091428193696457 1 -0.02619171142578125 6 Unmodified _VYKAFVMETF_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 67.83816525789305 0.020146919733137328 2 [YV]KA[{M(Oxidation (M))|F}V]MET{M(Oxidation (M))|F} 10 0 + 59.328 0 0 4.8093 4.8093 91.471 0 0 0 15.528198119064776 22.48853728921643 15.528198119064776 59.328217116467634 0 2.0356668758921828 1.6989700043360187 0 0 + + [YV]KA[{M(Oxidation (M))|F}V]MET{M(Oxidation (M))|F} 4.8093 + + 104 NaN NaN 188272.2 NaN 11396 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14708 64.9 NaN 507320 35 0 26609 0.261 -1 0 66 596.9667455343069 1787.8784072031208 3 597.3008422851562 MULTI HCD FTMS 0 0 0 14701 74256.6953125 0.14689330437109124 23 -0.591094970703125 7 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.4525 0 0 1475.7314299984457 0 1475.7314299984457 0 7.016675202793721 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4525 - 48 NaN NaN 179615.7 NaN 11397 3309 14701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14710 64.905 NaN 629050 35 0 43504 0.327 + 35499 YYFPVKNVI 9 74 571.8157670500777 1141.6169811669554 2 571.816162109375 MULTI HCD FTMS 0 0 0 14709 289047.1875 0.42931949858024643 4 -0.1047821044921875 1 Unmodified _YYFPVKNVI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 42.09456458481378 0.05572955244001856 2 YY{M(Oxidation (M))|F}[VP]{[QN]|[E{I|L}]|[KN]}V{I|L} 9 0 + 55.792 0 0 4.8871 4.8871 84.58 0 0 0 18.345078002212887 37.20885909469757 18.345078002212887 6.020599913279625 0 1.2614393726401687 1.6989700043360187 0 0.3054621874040891 + + YY{M(Oxidation (M))|F}[VP]{[QN]|[E{I|L}]|[KN]}V{I|L};YY{M(Oxidation (M))|F}[VP]{[NV]|[RG]}K{I|L} 4.8871;4.3598 +;- + 70 NaN NaN 182830.5 NaN 11398 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14711 64.909 NaN 320650 35 0 27842 0.261 + 7040 FPYVRDFVM 9 64 595.2892306771762 1188.5639084211523 2 595.2891845703125 MULTI HCD FTMS 0 0 0 14709 206916.390625 0.630594706140221 11 -0.2650146484375 2 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 53.40400417844725 0.026808823219830042 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 79.58 0 0 6.6955 6.6955 86.725 0 0 0 21.453650195120844 10 10 3.8071968632008435 0 2.305462187404089 2 0 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVRDV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKN{M(Oxidation (M))|F};{M(Oxidation (M))|F}PYVRD{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVKN{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KN{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YVR[{M(Oxidation (M))|F}V]D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VKGG{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YVKGG{M(Oxidation (M))|F} 6.6955;6.3752;5.0982;4.8905;4.8642;4.7682;4.5284;4.4661;4.3235;4.0895 +;-;-;+;-;-;-;-;-;- + 453 NaN NaN 146903.3 NaN 11399 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14712 64.913 NaN 264950 35 0 16185 0.261 + 27114 SYMGHFDLL 9 64 549.7498597197784 1097.4851665063568 2 549.7500610351562 MULTI HCD FTMS 0 0 0 14709 117849.609375 0.01399694256056177 167 -4.405036926269531 3 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 48.345845343767074 0.03388484103555672 2 {I|L}{I|L} 2 7 19.068 0 0 1.7374 0 0 853.307360577723 0 853.307360577723 0 1.0784094103974695 0 0 0 0.3494850021680094 0 0 0 + {I|L}{I|L} 1.7374 + + 80 NaN NaN 121830.9 NaN 11400 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14713 64.916 NaN 531840 35 0 23523 0.261 + -1 LPHRLVLVM 9 94 547.3326367080949 NaN 0 547.3327026367188 PEAK HCD FTMS 0 0 0 14709 72128.6796875 0.46468161973950567 16 -0.40814208984375 4 Oxidation (M) _LPHRLVLVM(Oxidation (M))_ REV__ENST00000375604.6_1_13:113656065-113656206:+|nuORF 9.347437153973935 0.2499504662953367 2 P{I|L}D{I|L}DKV 7 -1 30.934 0 0 2.8311 0 0 147.16742109991588 162.0228670709594 309.1902881708753 0 0 0 0 0 0 0 0 0 P{I|L}D{I|L}DKV 2.8311 - 394 + NaN NaN 165890.9 NaN 11401 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14714 64.92 NaN 406300 35 0 48601 0.261 -1 YNAPTDHGLCI 11 53 630.7876365569241 1259.560720180648 2 631.2891845703125 MULTI HCD FTMS 0 0 0 14709 48951.47265625 0.37213546687116394 -6 0.1738128662109375 5 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 26.268140514670165 0.22820724222159966 2 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 80.711 0 0 6.4079 0 0 0 265.1300142877563 265.1300142877563 61.247293946369794 0 0 0 0 2.6861818737241734 2 0.3494850021680094 0 NYA{[MS]|[{M(Oxidation (M))|F}A]}VYY 6.4079 - 154 + NaN NaN 155332.1 NaN 11402 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14715 64.923 NaN 258960 35 0 35125 0.264 -1 TAMDVVYAL 9 50 499.7461376028678 997.4777222725356 2 499.746337890625 MULTI HCD FTMS 0 0 0 14709 87255.3046875 0.895208967447891 4 -0.1047821044921875 6 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 15.847184025352803 0.2234401846867398 2 VYA{I|L} 4 -1 34.157 0 0 3.4243 0 0 533.2164173810562 0 533.2164173810562 0 17.1669877129645 0 0 0 1 0 0 0 VYA{I|L} 3.4243 + + 46 NaN NaN 130999.2 NaN 11403 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14716 64.926 NaN 193840 35 0 27529 0.261 + 22173 QLAALICGLF 10 51 524.7966756140884 1047.5787982949767 2 524.7968139648438 MULTI HCD FTMS 0 0 0 14709 86836.046875 0.623247675342368 4 -0.1047821044921875 7 Unmodified _QLAALICGLF_ ENSG00000120800|ENST00000261637|UTP20 26.88365393820708 0.25965138844209146 2 [Q{I|L}]A 3 7 21.311 0 0 2.0343 0 0 0 732.3751599495266 732.3751599495266 -0.14259415366922212 0 -0.14259415366922212 0 0 0.5 1.3010299956639813 0 0 + [Q{I|L}]A 2.0343 + + 27 NaN NaN 117755.9 NaN 11404 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14717 64.93 NaN 192240 35 0 36889 0.262 + 31759 VYLPGHFFHL 10 52 410.55360698850615 1228.6389915657185 3 410.55352783203125 MULTI HCD FTMS 0 0 0 14709 72721.1796875 1 0 0 8 Unmodified _VYLPGHFFHL_ ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-2|GSAP;nc|ENSG00000186088|A4D1B5-3|GSAP 7.101721422024254 0.4377131641736035 2 VY{I|L} 3 7 46.682 0 0 3.7995 0 0 0 850.3983851466146 850.3983851466146 41.197887582883936 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + VY{I|L} 3.7995 + + 19 + NaN NaN 113422.5 NaN 11405 3310 14709 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14719 64.935 NaN 1269700 35 0 142740 0.327 + 6520 FPISEETIKL 10 101 588.8292095670373 1175.6438662008745 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14718 1114127.375 0.5709979283831875 -5 0.15436553955078125 1 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 159.1008501968603 9.836314158329496E-11 2 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 109.11 0 0 9.2808 9.2808 90.732 0 0 0 37.79983633299621 1.1607435312808434 1.1607435312808434 4.057626832711193 0 3.190614065464281 0 1.3001648626366045 0.3054621874040891 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}EET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TDET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}TDET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}STEE{I|L}K{I|L};{[TV]|[{I|L}S]}P{M(Oxidation (M))|F}EET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}STEE{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]M{I|L}K{I|L} 9.2808;8.9356;8.3216;7.9001;7.7237;7.1097;6.4859;6.2378;5.8719;5.7963 +;+;-;-;-;-;-;-;-;- + 4079 + NaN NaN 277909.1 NaN 11406 3311 14718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14720 64.939 NaN 1547300 35 0 264290 0.261 + 32120 VYSFGFERL 9 98 559.2874934848479 1116.5604340364957 2 559.2877197265625 MULTI HCD FTMS 0 0 0 14718 848396.9375 0.7140745214867011 -2 0.0557708740234375 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 107.09958533191995 0.0034159042678574016 2 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L} 9 0 + 99.689 0 0 8.9283 8.9283 96.452 0 0 0 61.7228279076094 9.009461452434238 9.009461452434238 23.490990843429316 0 2.5356668758921828 1.6989700043360187 0.75 0 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L};[YV]S{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};VY[YQ]{M(Oxidation (M))|F}ER{I|L};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{I|L};VYSE{I|L}G[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YV]S{M(Oxidation (M))|F}GE[R{I|L}]{M(Oxidation (M))|F};[DV][HV]{I|L}G{M(Oxidation (M))|F}SP{M(Oxidation (M))|F};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}[R{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{M(Oxidation (M))|F}GE{M(Oxidation (M))|F}R{I|L};V{[NV]|[RG]}[TP]AWSP{M(Oxidation (M))|F} 8.9283;6.8244;6.217;6.0037;5.8314;5.1995;4.6078;4.3787;4.229;4.1716 +;-;-;-;-;-;-;-;-;- + 3408 + NaN NaN 327209.1 NaN 11407 3311 14718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14721 64.943 NaN 1510900 35 0 350690 0.261 + 24708 RYLTVAAVF 9 76 520.3003137195551 1038.5860745059101 2 520.300537109375 MULTI HCD FTMS 0 0 0 14718 438176 0.011688535900548852 44 -1.1232986450195312 3 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 41.8396318013385 0.056899836730939755 2 AAV{M(Oxidation (M))|F} 4 5 47.493 0 0 4.5728 0 0 632.3644969359603 0 632.3644969359603 0 40.50312209084183 0 0 0 1.555462187404089 0 0 0 + AAV{M(Oxidation (M))|F} 4.5728 + + 119 NaN NaN 317321.3 NaN 11408 3311 14718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14722 64.946 NaN 789570 35 0 74395 0.261 + 11870 KFDDIRIYF 9 94 608.8214915987583 1215.6284302643164 2 608.8218383789062 MULTI HCD FTMS 0 0 0 14718 385757.25 0.2401660616712442 5 -0.123626708984375 4 Unmodified _KFDDIRIYF_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 62.78007862980855 0.013692337156851905 2 [Y{I|L}]ND{I|L}R{I|L}Y{M(Oxidation (M))|F} 9 3 + 73.626 0 0 6.0566 6.0566 85.105 0 0 0 2.4742501084004687 8.359790849763641 2.4742501084004687 2.4742501084004687 0 1.3494850021680094 1.2218487496163564 0.28872548999643577 1.3243923658886185 [Y{I|L}]ND{I|L}R{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}R{I|L}Y{M(Oxidation (M))|F};K{[CP]|[EA]}{I|L}R{I|L}DDKE;[Y{I|L}]ND{I|L}RY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DD{I|L}RY{I|L}{M(Oxidation (M))|F};[Y{I|L}]GGD{I|L}R{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]NVER{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]NDVVHP{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVER{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DDVVHP{I|L}{M(Oxidation (M))|F} 6.0566;5.8531;5.3689;5.1391;4.9356;4.6984;4.4183;4.2788;4.2147;4.0753 -;+;-;-;-;-;-;-;-;- + 1041 NaN NaN 215936.5 NaN 11409 3311 14718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14723 64.949 NaN 225900 35 0 16158 0.261 + 11753 KDMQEYFDF 9 52 611.7574773502996 1221.5004017673991 2 611.7572631835938 MULTI HCD FTMS 0 0 0 14718 118820.4453125 0.44696892574640407 -10 0.261962890625 5 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 50.243 0 0 4.1132 0 0 305.13597304511876 0 305.13597304511876 0 42.17112346990216 0 0 0 2.274227503252014 0 0 0 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1132 - 112 NaN NaN 123125.9 NaN 11410 3311 14718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14724 64.953 NaN 174550 35 0 11286 0.261 + 11858 KFAEEFYSF 9 64 584.2714072380124 1166.5282615428248 2 584.2717895507812 MULTI HCD FTMS 0 0 0 14718 29483.884765625 0.027695060789247505 32 -0.80322265625 6 Unmodified _KFAEEFYSF_ ENSG00000164649|ENST00000406877|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-5|CDCA7L 18.373094154950223 0.20161688160436167 2 [Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 9 3 + 46.928 0 0 4.0229 4.0229 87.736 0 0 0 8.00021925931027 15.004632150221227 8.00021925931027 14.771212547196619 0 1.3494850021680094 1.6989700043360187 0 0 [Y{I|L}][QA]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]E{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4.0229;2.7566 -;- 111 NaN NaN 132805.1 NaN 11411 3311 14718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14726 64.957 NaN 426770 35 0 43939 0.327 -1 NSPRMDLTL 9 81 531.7663055313462 1061.5180581294924 2 531.7664184570312 MULTI HCD FTMS 0 0 0 14725 158053.234375 0.2697008619202078 6 -0.15316009521484375 1 Oxidation (M) _NSPRM(Oxidation (M))DLTL_ ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant 16.149105407346934 0.22083165093524068 2 WD{I|L}T{I|L} 5 -1 37.524 0 0 3.5349 0 0 415.18834120918126 0 415.18834120918126 0 20.24350030035414 0 0 0 0.5 0 0.6861818737241735 0 WD{I|L}T{I|L} 3.5349 - 175 NaN NaN 158186.6 NaN 11412 3312 14725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14727 64.962 NaN 407730 35 0 156150 0.263 + 11872 KFDDIRIYF 9 42 406.2167902515407 1215.6285413548221 3 406.216796875 MULTI HCD FTMS 0 0 0 14725 78606.5859375 0.08402959329636858 6 -0.15316009521484375 2 Unmodified _KFDDIRIYF_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 15.738622578938676 0.22437813149664254 2 R{I|L}Y{M(Oxidation (M))|F} 4 5 39.949 0 0 3.2862 0 0 618.3011774790021 0 618.3011774790021 0 34.463950151760656 0 0 0 1.5 0 0 0 + R{I|L}Y{M(Oxidation (M))|F} 3.2862 + + 20 + NaN NaN 140649.9 NaN 11413 3312 14725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14728 64.965 NaN 430970 35 0 81658 0.261 + 270 AFLKVSSVF 9 69 499.28941512152693 996.5642773098539 2 499.289306640625 MULTI HCD FTMS 0 0 0 14725 104562.6171875 0.6183955942043128 -2 0.0523834228515625 3 Unmodified _AFLKVSSVF_ ENSG00000100401|ENST00000356244|RANGAP1 89.40071534611396 0.0045416704840156395 2 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}KVSSV{M(Oxidation (M))|F} 9 0 + 81.169 0 0 8.1449 8.1449 97.465 0 0 0 5.6424927368725974 68.82699415683639 5.6424927368725974 81.1688190037372 0 2.9802046884880937 0 1.055462187404089 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}KVSSV{M(Oxidation (M))|F} 8.1449 + + 236 NaN NaN 153311.5 NaN 11414 3312 14725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14729 64.969 NaN 208050 35 0 9849.3 0.261 -1 IYWWILLC 8 56 583.8079806780954 1165.6014084229907 2 583.8084106445312 MULTI HCD FTMS 0 0 0 14725 30624.8515625 0.1344234925669621 19 -0.48638916015625 4 Carbamidomethyl (C) _IYWWILLC(Carbamidomethyl (C))_ nc|ENSG00000144339|Q9UIK5-3|TMEFF2 6.354104778181461 0.5325651638111438 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 23.468 0 0 2.0134 0 0 0 797.4562112396501 797.4562112396501 15.034605321095068 0 0 0 0 0 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}S 2.0134 - 43 NaN NaN 112818.4 NaN 11415 3312 14725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14730 64.972 NaN 85276 35 0 8069.4 0.264 + -1 QYCSCFHDF 9 46 421.82354736328125 NaN 0 421.82354736328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _QYC(Carbamidomethyl (C))SC(Carbamidomethyl (C))FHDF_ REV__ENSG00000156970|ENST00000287598|BUB1B;REV__nc|ENSG00000156970|O60566-2|BUB1B;REV__nc|ENSG00000156970|O60566-3|BUB1B 0.26902006276349055 0.29394320858957723 2 E 1 -1 1.5938 0 0 0.19005 0 0 476.5193343732438 230.03627954654533 706.5556139197892 0 0 0 0 0 0 0 0 0 E 0.19005 - 1 + NaN NaN 103743.4 NaN 11416 3312 14725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14732 64.977 NaN 832780 35 0 78853 0.326 + 29103 TYGEIFEKF 9 99 567.2792195549672 1132.5438861767343 2 567.279296875 MULTI HCD FTMS 0 0 0 14731 404312.65625 0.019229514466391734 75 -1.9282150268554688 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 70.33199760932243 0.0089807860198535 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 66.913 0 0 5.9082 5.9082 87.411 0 0 0 15.924778212679485 9.002808361964924 9.002808361964924 9.002808361964924 0 2.087180496500464 1.6989700043360187 0.6989700043360187 0 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}E][{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPYVV[YK];{[YD]|[{M(Oxidation (M))|F}M]}AT[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};[RH]E[C(Carbamidomethyl (C))K][VS]A{M(Oxidation (M))|F};[RH]E[C(Carbamidomethyl (C))K]EK{M(Oxidation (M))|F} 5.9082;5.1133;4.5021;4.234;3.7072;3.4391;2.6501;2.6141;1.9388;1.8523 -;-;-;-;-;-;-;-;-;- 984 NaN NaN 213177.3 NaN 11417 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14733 64.981 NaN 614780 35 0 139070 0.261 + 8383 GYMEGYYTF 9 75 573.7261901080524 1145.4378272829047 2 573.7264404296875 MULTI HCD FTMS 0 0 0 14731 319635.125 0.8210397864978873 5 -0.133575439453125 2 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 133.70201269244603 0.0003804610509361063 2 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 105.19 0 0 9.1832 9.1832 92.408 0 0 0 8.45098040014257 16.478174818886373 8.45098040014257 8.45098040014257 0 2.8494850021680094 1.3979400086720375 1.110924374808178 0 [YT]CEGYYT{M(Oxidation (M))|F};[YG]{M(Oxidation (M))|F}EGYYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YG]GYYT{M(Oxidation (M))|F};[HT]E{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YN]YYT{M(Oxidation (M))|F};[HT]{M(Oxidation (M))|F}E{[DS]|[MA]|[CV]|TT}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[YG]{M(Oxidation (M))|F}E[YG];[YT]{M(Oxidation (M))|F}[YG]E{M(Oxidation (M))|F}[YG] 9.1832;8.4454;5.6264;5.0596;4.6243;3.9398;3.1102;1.9905 -;+;-;-;-;-;-;- + 446 NaN NaN 180658.3 NaN 11418 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14734 64.985 NaN 573160 35 0 109170 0.261 + 5358 FFYYDQDQ 8 85 563.2301992726352 1124.4458456120703 2 563.2302856445312 MULTI HCD FTMS 0 0 0 14731 281562.5625 0.6112343491647969 -8 0.21294403076171875 3 Unmodified _FFYYDQDQ_ REV__ENSG00000099338|ENST00000409235|CATSPERG;REV__ENST00000412458.6_1_19:38845366-38860119:+|nuORF;REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF 18.13498045792455 0.4603629008820478 2 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 67.67 0 0 6.018 0 0 315.086229392775 0 315.086229392775 0 25.286144654057665 0 0 0 2.254432191740108 0 0.3054621874040891 0 S{I|L}EAD{M(Oxidation (M))|F}E 6.018 - 308 NaN NaN 177116.7 NaN 11419 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14735 64.988 NaN 618840 35 0 41890 0.261 + 6572 FPLDLDVKM 9 96 547.2840734785718 1092.5535940239436 2 547.2841796875 MULTI HCD FTMS 0 0 0 14731 134187.453125 0.1775090902130945 -21 0.5595321655273438 4 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 71.70789743142352 0.008535567138151097 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 94.378 0 0 8.6383 8.6383 89.923 0 0 0 85.83979926762548 16.478174818886373 16.478174818886373 3.789850105233299 0 3.004432191740108 0 0 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]M[{I|L}T];{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]{I|L}[MT];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{[CA]|SS}T{I|L}[{I|L}T] 8.6383;8.2914;7.7516;6.1756;6.1366;5.8622;4.9553;4.666;4.4074;3.557 +;+;-;-;-;-;-;-;-;- + 1037 + NaN NaN 178353.9 NaN 11420 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14736 64.992 NaN 383500 35 0 44798 0.261 + 17351 LYPYLNEKL 9 86 576.8183623005181 1151.622171667836 2 576.8182983398438 MULTI HCD FTMS 0 0 0 14731 116098.1328125 0.4601465576484587 5 -0.133575439453125 5 Unmodified _LYPYLNEKL_ REV__ENSG00000136631|ENST00000644510|VPS45;REV__nc|ENSG00000136631|Q9NRW7-2|VPS45 43.77239144664712 0.04802738721622131 2 {I|L}YST[W{I|L}]EK{I|L} 9 -1 + 73.227 0 0 6.3586 6.3586 93.459 0 0 0 66.2376655449038 9.009461452434238 9.009461452434238 42.8140244052183 0 2.0669015600442577 1.6989700043360187 0.9247425010840047 0 {I|L}YST[W{I|L}]EK{I|L};{I|L}Y[WH][VG]HK{I|L};{I|L}[R{I|L}][{M(Oxidation (M))|F}E]R[YR] 6.3586;2.6409;0.42054 -;-;- 300 + NaN NaN 144375.2 NaN 11421 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14737 64.995 NaN 1984200 35 0 536230 0.263 + 23192 RFLNDPGHLLW 11 85 456.57865725541933 1366.714142366458 3 456.5786437988281 MULTI HCD FTMS 0 0 0 14731 221684.09375 0.06271392371634808 -7 0.19675445556640625 6 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 52.19289622718417 0.07241336989735415 2 [R{M(Oxidation (M))|F}]{I|L}NDP{[HG]|PP}{I|L}{I|L}W 11 0 + 76.335 0 0 5.5853 5.5853 86.982 0 0 0 5.862435673934286 64.15240291133911 5.862435673934286 9.128498242811006 0 2.579689690656103 0 0.3054621874040891 0.805462187404089 + + [R{M(Oxidation (M))|F}]{I|L}NDP{[HG]|PP}{I|L}{I|L}W;[R{M(Oxidation (M))|F}]{I|L}GGDP{[HG]|PP}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[NV]|[RG]}DP{[HG]|PP}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[HG]|PP}PDNV{I|L}{[DA]|[EG]};[R{M(Oxidation (M))|F}]{I|L}[HA]PD{[NV]|[RG]}{I|L}W;[HK][HK]D[YQ]{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[NV]|[RG]}D[YQ]{I|L}{I|L}[VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}[YQ]DNV{I|L}[VS] 5.5853;4.9174;4.6201;4.0502;3.8691;3.7882;3.5618;3.5348 +;-;-;-;-;-;-;- + 349 NaN NaN 388193.1 NaN 11422 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14738 64.998 NaN 447040 35 0 45294 0.261 + 34544 YPIWAILF 8 66 511.78835011845695 1021.5621473037139 2 511.788330078125 MULTI HCD FTMS 0 0 0 14731 82318.390625 0.74314273138025 5 -0.133575439453125 7 Unmodified _YPIWAILF_ REV__ENSG00000124818|ENST00000371211|OPN5 24.20995872069341 0.415665547393293 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RD]{M(Oxidation (M))|F}V{I|L} 8 -1 + 33.153 0 0 3.2454 3.2454 83.264 0 0 0 2.7081220072886225 6.955547018128669 2.7081220072886225 7.257724967479859 0 1.1549471895720984 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RD]{M(Oxidation (M))|F}V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RD]V{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RD]V{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QG]|[NA]}[KA]{M(Oxidation (M))|F}V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[HG]|PP}[HS]V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QG]|[NA]}[KA]V{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QG]|[NA]}[KA]V{I|L}{M(Oxidation (M))|F} 3.2454;2.5349;2.0679;1.6713;1.3193;0.96089;0.49384 -;-;-;-;-;-;- 101 NaN NaN 169965.8 NaN 11423 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14739 65.002 NaN 265080 35 0 15946 0.261 + 10001 IEPEWHKL 8 71 526.282108555566 1050.5496641779318 2 526.2822265625 MULTI HCD FTMS 0 0 0 14731 67758.46875 0.3340430089785177 7 -0.18584442138671875 8 Unmodified _IEPEWHKL_ REV__ENSG00000196735|ENST00000343139|HLA-DQA1;REV__ENSG00000237541|ENST00000374940|HLA-DQA2;REV__ENST00000482745.5_1_6:32607639-32610538:+|nuORF;REV__nc|ENSG00000237541|P01909|HLA-DQA1 18.1463463914782 0.46027927471454505 2 VEGS{I|L} 5 -1 41.599 0 0 3.9597 0 0 547.2757435529312 0 547.2757435529312 0 26.11432819416656 0 0 0 1 0 0.3807196863200844 0 VEGS{I|L} 3.9597 - 410 NaN NaN 133194.8 NaN 11424 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14740 65.005 NaN 135580 35 0 46091 0.261 -1 LCGDCQCCGCC 11 36 464.8023986816406 NaN 0 464.8023986816406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 5 Carbamidomethyl (C) _LC(Carbamidomethyl (C))GDC(Carbamidomethyl (C))QC(Carbamidomethyl (C))C(Carbamidomethyl (C))GC(Carbamidomethyl (C))C_ ENSG00000169903|ENST00000305354|TM4SF4 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109547.3 NaN 11425 3313 14731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14742 65.01 NaN 713390 35 0 33570 0.327 + 27199 SYNNFFRMF 9 90 621.2740136938751 1240.53347445455 2 621.2749633789062 MULTI HCD FTMS 0 0 0 14741 260212.890625 0.05431452199117777 31 -0.787017822265625 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 76.869 0 0 6.1964 6.1964 88.868 0 0 0 5.51924358097537 50.70493438421167 5.51924358097537 9.208187539523749 0 3 0 0.6505149978319906 1.5114393726401687 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NN[MT];{[{M(Oxidation (M))|F}C]|[YS]}NN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[RP][MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NGG[MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]GGN[MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}[AG][KQ]NN[MT];[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[KP]N[WC(Carbamidomethyl (C))] 6.1964;5.4541;5.4541;4.0661;2.0647;1.373;1.3259;1.3259;1.3259;1.2889 +;-;-;-;-;-;-;-;-;- + 1741 NaN NaN 201915.2 NaN 11426 3314 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14743 65.014 NaN 578450 35 0 84614 0.264 + -1 MSAMRGKH 8 83 467.2239532979943 NaN 0 467.2332458496094 PEAK HCD FTMS 0 0 0 14741 13477.4560546875 1 0 0 2 Oxidation (M) _MSAM(Oxidation (M))RGKH_ REV__tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1 8.593279151180031 0.38822285293237185 2 {I|L}{I|L} 2 -1 9.464 0 0 1.015 0 0 59.02890974543943 644.2233184776414 703.2522282230809 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.015 - 18 + NaN NaN 189212 NaN 11427 3314 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14744 65.018 NaN 429040 35 0 17814 0.261 + 22715 QYASAFHFL 9 81 542.2667660525767 1082.5189791719533 2 542.2669677734375 MULTI HCD FTMS 0 0 0 14741 159933.453125 0.18448368925383796 8 -0.1984710693359375 3 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 42.09456458481378 0.05572955244001856 2 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 8 6 50.883 0 0 4.7005 0 0 165.0788288800797 0 165.0788288800797 0 23.928352599384866 0 0 0 0.3054621874040891 0 0.5 0 {I|L}H{M(Oxidation (M))|F}ASAC(Carbamidomethyl (C)){I|L} 4.7005 - 694 NaN NaN 160055.7 NaN 11428 3314 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14745 65.021 NaN 320440 35 0 28034 0.261 + -1 WCTQLLVRFA 10 54 647.3433463770987 1292.6721398209972 2 647.3443603515625 MULTI HCD FTMS 0 0 0 14741 99691.9140625 0.5673290636746214 -2 0.052398681640625 4 Carbamidomethyl (C) _WC(Carbamidomethyl (C))TQLLVRFA_ REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF 31.26834338654808 0.2211790902911672 2 {[ES]|[DT]|[{I|L}C]}QSGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR 12 -1 + 94.664 0 0 7.3231 7.3231 89.952 0 0 0 76.08017516893504 8.181277912325342 8.181277912325342 9.098233696509126 0 3.385151878060192 0 0.6989700043360187 0 {[ES]|[DT]|[{I|L}C]}QSGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}[AG]SGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}QS{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}GR;{[ES]|[DT]|[{I|L}C]}[AG]S{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{I|L}GR 7.3231;6.6193;5.34;4.6338 -;-;-;- 170 + NaN NaN 143711.7 NaN 11429 3314 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14746 65.024 NaN 334390 35 0 84839 0.265 + 1938 DAFKDFVV 8 67 470.742228831779 939.469904730358 2 470.7426452636719 MULTI HCD FTMS 0 0 0 14741 124992.9453125 0.3901084991981355 -6 0.1604461669921875 5 Unmodified _DAFKDFVV_ ENSG00000049130|ENST00000644744|KITLG;nc|ENSG00000049130|P21583-2|KITLG;nc|ENSG00000049130|P21583-3|KITLG 29.081581746732265 0.3711897268585781 2 {[DA]|[EG]}{M(Oxidation (M))|F} 3 5 33.468 0 0 3.5624 0 0 0 603.3145451935018 603.3145451935018 8.691577868965155 0 0 0 0 1 1.3010299956639813 0 0 + {[DA]|[EG]}{M(Oxidation (M))|F} 3.5624 + + 27 NaN NaN 136789.8 NaN 11430 3314 14741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14748 65.029 NaN 5298400 35 0 845220 0.327 + 5194 FFDAELSQM 9 96 552.2391290246032 1102.4637051160064 2 552.2396850585938 MULTI HCD FTMS 0 0 0 14747 2671784.5 0.7421201014942205 -1 0.01958465576171875 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 QDAE{I|L}SQ{M(Oxidation (M))|F} 8 2 99.467 0 0 9.0222 0 0 166.06570814510638 0 166.06570814510638 0 57.361081649832784 0 0 0 3.1989700043360187 0 1.7416440611282624 0.9361818737241735 QDAE{I|L}SQ{M(Oxidation (M))|F} 9.0222 - 4435 + NaN NaN 804845.2 NaN 11431 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14749 65.034 NaN 5005300 35 0 525780 0.226 + 13269 KYMDINFDF 9 116 604.7681072670384 1207.5216616008768 2 604.7684936523438 MULTI HCD FTMS 0 0 0 14747 2351001.75 0.6863341442005647 -5 0.12436676025390625 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 139.78183599554657 1.962818552322152E-05 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 90.746 0 0 7.515 7.515 89.085 0 0 0 3.2568864632742844 43.89436723352722 3.2568864632742844 6.025684359364405 0 2.610924374808178 0 1.2491348669726232 1.2302046884880937 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 7.515;7.016;6.7525;6.2535;6.1117;5.7053;5.6524;5.6127;5.3491;5.2151 +;-;-;-;-;-;-;-;-;- + 8988 NaN NaN 679860.1 NaN 11432 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14750 65.037 NaN 881340 35 0 86122 0.261 + -1 NYAICNKTNF 10 104 622.7903798824855 1243.5662068317708 2 622.7903442382812 MULTI HCD FTMS 0 0 0 14747 251088.25 0.7838105577643965 -1 0.01958465576171875 3 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ REV__ENSG00000134539|ENST00000336164|KLRD1;REV__ENST00000539374.1_1_12:10464095-10467389:+|nuORF;REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF;REV__nc|ENSG00000134539|Q13241-2|KLRD1;REV__nc|ENSG00000134539|Q13241-3|KLRD1 34.40172386719151 0.19398797222092762 2 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L} 9 -1 + 90.657 0 0 7.2901 7.2901 94.01 0 0 0 18.10255477305097 67.53567058712731 18.10255477305097 23.830053733987967 0 2.305462187404089 1.6989700043360187 0 2.173877368056628 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L};[YN]A[{M(Oxidation (M))|F}V]V{[DS]|[MA]|[CV]|TT}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VW[YN]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[WN]|[YH]}VYYH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}V{NN|[MP]|[D{I|L}]|[EV]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]A{[DS]|[MA]|[CV]|TT}V{[NV]|[RG]}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YN]VYYH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}V{[QV]|[N{I|L}]|[RA]|[KV]}D{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]A{[{M(Oxidation (M))|F}H]|[RQ]}YY[PG]{I|L};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VW{I|L}[YN] 7.2901;5.3738;4.6854;4.6688;4.6225;4.3804;4.3478;4.3025;4.225;4.0756 -;-;-;-;-;-;-;-;-;- 3227 NaN NaN 217151.2 NaN 11433 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14751 65.04 NaN 522470 35 0 44182 0.261 + 9818 HYNWLIYHL 9 81 629.82190727017 1257.6292616071398 2 629.8218383789062 MULTI HCD FTMS 0 0 0 14747 180471.6875 0.10377537100304209 -5 0.12436676025390625 4 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 103.35351024395868 0.004027461563756449 2 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 104.16 0 0 8.2823 8.2823 92.462 0 0 0 9.554687406276017 9.554687406276017 9.554687406276017 9.208187539523749 0 2.774227503252014 1.5228787452803376 0 1.055462187404089 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};[YN]HW{I|L}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}Y{I|L}H{I|L};[YN]HW{I|L}Y{I|L}H{I|L} 8.2823;7.5501;7.5226;7.0262;6.7497;6.6346;6.5475;6.294;5.4936;5.3785 +;-;+;-;-;-;-;-;-;- + 519 NaN NaN 173041 NaN 11434 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14752 65.043 NaN 1421100 35 0 237020 0.262 + 9099 HPFHILIAL 9 93 530.8186649865431 1059.6227770398862 2 530.8187255859375 MULTI HCD FTMS 0 0 0 14747 124089.1484375 0.27659294992687883 -5 0.12436676025390625 5 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 67.41302359171755 0.009925318700911543 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[H{I|L}]{I|L}{I|L}A{I|L} 9 0 + 62.935 0 0 5.9394 5.9394 90.834 0 0 0 17.501835016497566 36.2794228098481 17.501835016497566 16.19325543266271 0 1.894599018282542 0 1.8539171939081172 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[H{I|L}]{I|L}{I|L}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[H{I|L}]{I|L}A{I|L}{I|L};HP{M(Oxidation (M))|F}[H{I|L}]{I|L}{I|L}A{I|L};{I|L}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}PHA{I|L};{I|L}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}PAH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[{I|L}V]VVH{I|L};{I|L}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}PA{I|L}H 5.9394;4.4112;3.4717;2.3691;1.0677;0.43807;0.2154 +;-;+;-;-;-;- + 617 NaN NaN 298885.7 NaN 11435 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14753 65.047 NaN 434900 35 0 26462 0.261 + -1 EMYIRSLCV 9 70 585.7850528905055 1169.555552847811 2 586.8087768554688 MULTI HCD FTMS 0 0 0 14747 19648.546875 0.22307026887223838 -12 0.311126708984375 6 Carbamidomethyl (C) _EMYIRSLC(Carbamidomethyl (C))V_ REV__SGPP1|p.G253E|1|0.43|ENSG00000126821|chr14:63698585-63698585|C/T|missense_variant 19.256988751693697 0.19398022840297344 2 EWT[Y{I|L}]S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9 -1 + 56.111 0 0 4.7976 4.7976 83.675 0 0 0 22.607668156467255 3.4556125503637958 3.4556125503637958 3.9131874559705437 0 0 1.2218487496163564 0.8494850021680094 0.555462187404089 EWT[Y{I|L}]S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};E{M(Oxidation (M))|F}{I|L}S{[ES]|[DT]|[{I|L}C]}S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};E{M(Oxidation (M))|F}TV{[ES]|[DT]|[{I|L}C]}S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};EWT{M(Oxidation (M))|F}TKQ[KC];EMR[Y{I|L}]S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};E{M(Oxidation (M))|F}T{M(Oxidation (M))|F}[RV]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};EMR{M(Oxidation (M))|F}TST[W{I|L}];EMR[Y{I|L}]SQP{M(Oxidation (M))|F};{M(Oxidation (M))|F}[PA]T[Y{I|L}]S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};EM[VG][Y{I|L}]S{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.7976;4.463;3.9483;3.6573;3.6035;3.2354;3.1933;2.9246;2.905;2.8162 -;-;-;-;-;-;-;-;-;- 1069 + NaN NaN 156245.7 NaN 11436 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14754 65.05 NaN 464110 35 0 36714 0.261 + -1 IYMQLFCAPF 10 74 624.7939710236618 NaN 0 624.8078002929688 PEAK HCD FTMS 0 0 0 14747 14154.7158203125 0.9717684609926696 -1 0.01958465576171875 7 Oxidation (M) _IYM(Oxidation (M))QLFCAPF_ REV__ENSG00000184478|ENST00000641160|OR56A3 11.640296217721598 0.3302218087712401 2 YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}D 6 -1 30.935 0 0 2.4796 0 0 113.05444139202253 318.15647302799067 431.2109144200132 0 0 0 0 0 0 0 0 0.3054621874040891 YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}D 2.4796 - 229 + NaN NaN 168985.3 NaN 11437 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14755 65.053 NaN 497660 35 0 25407 0.261 + 31807 VYMDWYEKF 9 82 648.7838371335808 1295.5531213339616 2 648.7840576171875 MULTI HCD FTMS 0 0 0 14747 87807.34375 0.03901276794875982 59 -1.52410888671875 8 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 61.08992128646608 0.016056751534446034 2 VY{M(Oxidation (M))|F}DWYE 7 2 88.264 0 0 6.8128 0 0 0 290.15070520572505 290.15070520572505 70.30471667985921 0 0 0 0 2.3807196863200843 2 0 0 + VY{M(Oxidation (M))|F}DWYE 6.8128 + + 424 + NaN NaN 173416.1 NaN 11438 3315 14747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14757 65.058 NaN 2997600 35 0 264960 0.326 + 27304 SYQKVIELF 9 118 563.8107231126356 1125.6068932920712 2 563.8108520507812 MULTI HCD FTMS 0 0 0 14756 1442605.625 0.4074469997573856 -4 0.10082244873046875 1 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 107.5634045930896 0.0033401844687379516 2 SYQKV{I|L}E{I|L} 8 1 88.358 0 0 7.8498 0 0 0 162.05610071353752 162.05610071353752 55.48700060070828 0 0 0 0 2.9247425010840047 1.6989700043360187 0.7302046884880937 0.3494850021680094 + SYQKV{I|L}E{I|L} 7.8498 + + 1609 + NaN NaN 545291.2 NaN 11439 3316 14756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14758 65.063 NaN 817310 35 0 157480 0.261 + 31449 VYDGKFAIF 9 84 530.2790816263465 1058.543610319493 2 530.2791748046875 MULTI HCD FTMS 0 0 0 14756 121812.3515625 0.8300312507785546 1 -0.01619720458984375 2 Unmodified _VYDGKFAIF_ ENSG00000065361|ENST00000267101|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-2|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3 32.78568957990786 0.09846250359632436 2 VYD 3 6 46.708 0 0 4.4125 0 0 0 678.364280189553 678.364280189553 22.754537344402905 0 0 0 0 0.75 2 0 0 + VYD 4.4125 + + 223 + NaN NaN 235407.8 NaN 11440 3316 14756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14759 65.066 NaN 564770 35 0 65528 0.261 + 29585 VADPYVVIM 9 73 511.76491871505846 1021.5152844969169 2 511.7650451660156 MULTI HCD FTMS 0 0 0 14756 95014.9609375 0.2714808915135846 -4 0.10082244873046875 3 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 42.09456458481378 0.05572955244001856 2 VV{I|L}{M(Oxidation (M))|F} 4 5 48.36 0 0 4.7341 0 0 545.2486046646889 0 545.2486046646889 0 27.390690719683093 0 0 0 1.8807196863200843 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.7341 + + 395 + NaN NaN 178458.6 NaN 11441 3316 14756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14760 65.07 NaN 243110 35 0 18716 0.261 + 27115 SYMGHFDLL 9 72 549.7498597197784 1097.4851665063568 2 549.75048828125 MULTI HCD FTMS 0 0 0 14756 135651.53125 0.01611126843124931 173 -4.595771789550781 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 42.09456458481378 0.05572955244001856 2 {I|L}{I|L} 2 7 20.701 0 0 1.8862 0 0 853.307951955259 0 853.307951955259 0 4.045612717470203 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 1.8862 + + 53 NaN NaN 129629.4 NaN 11442 3316 14756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14762 65.074 NaN 1417300 35 0 155450 0.327 + 6521 FPISEETIKL 10 95 588.8292095670373 1175.6438662008745 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14761 1275921.25 0.6539184000663184 1 -0.03614044189453125 1 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 135.86342318000737 7.994840703560577E-06 2 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 109.48 0 0 9.3123 9.3123 94.446 0 0 0 44.1256052219986 1.1607435312808434 1.1607435312808434 9.317700919062432 0 3.2179001828205482 0 1.3098943791441968 0.3054621874040891 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};{M(Oxidation (M))|F}{I|L}PSEET{I|L}K{I|L};{I|L}{M(Oxidation (M))|F}PSEET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}EET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}S{[{M(Oxidation (M))|F}D]|MM}P{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}STEE{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}D]|MM}P{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}STEE{I|L}K{I|L} 9.3123;8.5197;8.3303;8.0742;7.9057;7.2281;6.6058;6.225;5.9918;5.611 +;+;-;-;-;-;-;-;-;- + 2938 + NaN NaN 307531.2 NaN 11443 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14763 65.079 NaN 1014400 35 0 174930 0.261 + 32121 VYSFGFERL 9 93 559.2874934848479 1116.5604340364957 2 559.287841796875 MULTI HCD FTMS 0 0 0 14761 587582.375 0.49455341564354055 4 -0.095611572265625 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 107.09958533191995 0.0034159042678574016 2 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L} 9 0 + 99.491 0 0 8.9105 8.9105 96.939 0 0 0 58.5398724315865 9.009461452434238 9.009461452434238 30.273109370204452 0 2.5356668758921828 1.6989700043360187 0.7302046884880937 0 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}ER{I|L};VY[YQ]{M(Oxidation (M))|F}ER{I|L};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{I|L};VYSE{I|L}G[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YV]S{[DA]|[EG]}{M(Oxidation (M))|F}[R{I|L}]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HK]{I|L}ESP{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{I|L}ESP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{[DA]|[EG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{I|L};V{[NV]|[RG]}[TP]AWSP{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[PA]{[QV]|[N{I|L}]|[RA]|[KV]}SP{M(Oxidation (M))|F} 8.9105;6.1992;6.0316;5.2658;4.4244;3.7355;3.4066;3.3653;3.2862;2.8304 +;-;-;-;-;-;-;-;-;- + 2380 + NaN NaN 255689.6 NaN 11444 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14764 65.082 NaN 1344600 35 0 238120 0.262 + 10151 IFRRSLCMRSM 11 104 467.241897757729 1398.703863873387 3 467.57635498046875 MULTI HCD FTMS 0 0 0 14761 193940.453125 0.457235569026011 -4 0.09743499755859375 3 Unmodified _IFRRSLCMRSM_ REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF 4.11662792887243 0.40086653484894175 2 [R{M(Oxidation (M))|F}]{I|L}ND 5 -1 24.091 0 0 1.7224 0 0 0 750.3573189995985 750.3573189995985 9.38621833046462 0 0 0 0 0.4247425010840047 0 0 0.23965182871044374 [R{M(Oxidation (M))|F}]{I|L}ND 1.7224 - 202 NaN NaN 300181.6 NaN 11445 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14765 65.086 NaN 496600 35 0 38028 0.261 + 11871 KFDDIRIYF 9 84 608.8214915987583 1215.6284302643164 2 608.8222045898438 MULTI HCD FTMS 0 0 0 14761 181272.9375 0.11285752241066785 11 -0.29732513427734375 4 Unmodified _KFDDIRIYF_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 32.89776655970281 0.09794800747291528 2 K{M(Oxidation (M))|F}DD 4 5 35.918 0 0 2.9547 0 0 0 707.3890384471279 707.3890384471279 3.521825181113627 0 0 0 0 0.8494850021680094 0 0 0 + K{M(Oxidation (M))|F}DD 2.9547 + + 655 + NaN NaN 167757.7 NaN 11446 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14766 65.089 NaN 398610 35 0 24291 0.261 + 11754 KDMQEYFDF 9 67 611.7574773502996 1221.5004017673991 2 611.7578735351562 MULTI HCD FTMS 0 0 0 14761 190736.78125 0.7174978514128716 -4 0.09743499755859375 5 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 17.11289562659939 0.2125047172822487 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 62.401 0 0 5.1085 5.1085 86.346 0 0 0 5.190002277350629 52.90221594415691 5.190002277350629 9.164539485499255 0 2.274227503252014 0 0.3807196863200844 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTN{NN|[MP]|[D{I|L}]|[EV]}[TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][TA]D{M(Oxidation (M))|F};YYTN{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[WT]|[RM]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}A[{M(Oxidation (M))|F}V][DG]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{M(Oxidation (M))|F}[{I|L}A]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{M(Oxidation (M))|F};YYTGG{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[WT]|[RM]} 5.1085;4.3583;4.0278;2.7314;2.714;2.5872;2.3068;2.1664;2.0558;1.9602 -;-;-;-;-;-;-;-;-;- 519 NaN NaN 155359.1 NaN 11447 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14767 65.092 NaN 347770 35 0 14039 0.261 -1 VEHCCMRCC 9 86 578.6948552699649 1155.3751576067298 2 578.6948852539062 MULTI HCD FTMS 0 0 0 14761 47013.87109375 0.2761430191533299 1 -0.03614044189453125 6 Carbamidomethyl (C),Oxidation (M) _VEHCC(Carbamidomethyl (C))M(Oxidation (M))RCC_ ENSG00000170011|ENST00000302541|MYRIP;MYRIP|p.S404Rfs*2|1|0.41|ENSG00000170011|chr3:40190008-40190009|-/G|frameshift_variant;nc|ENSG00000170011|Q8NFW9-2|MYRIP;nc|ENSG00000170011|Q8NFW9-5|MYRIP 3.944395688203298 0.32111559684428237 2 {I|L}{[QS]|[NT]}{M(Oxidation (M))|F} 4 -1 8.6587 0 0 0.74942 0 0 662.1554432599625 0 662.1554432599625 0 3.174100046527359 0 0 0 0.3252574989159953 0 0 0 {I|L}{[QS]|[NT]}{M(Oxidation (M))|F} 0.74942 - 51 NaN NaN 162886.9 NaN 11448 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14768 65.096 NaN 563810 35 0 58116 0.261 + 5758 FPAGYMYPSM 10 79 590.2458846262415 1178.477216319283 2 590.7464599609375 MULTI HCD FTMS 0 0 0 14761 66662.921875 0.40499714176196183 1 -0.03614044189453125 7 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 MYPS{M(Oxidation (M))|F} 5 5 48.488 0 0 4.1144 0 0 535.2423774453489 0 535.2423774453489 0 33.38303186148905 0 0 0 1.805462187404089 0 0 0 + MYPS{M(Oxidation (M))|F} 4.1144 + + 344 NaN NaN 173626.7 NaN 11449 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14769 65.099 NaN 225710 35 0 17758 0.261 + 7041 FPYVRDFVM 9 56 595.2892306771762 1188.5639084211523 2 595.2892456054688 MULTI HCD FTMS 0 0 0 14761 95542.546875 0.29117376389828425 18 -0.4673614501953125 8 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 40.23920728925047 0.06424668180817725 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV[RD]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 56.335 0 0 4.7397 4.7397 83.321 0 0 0 11.896512253176823 43.3759123398972 11.896512253176823 3.252574989159953 0 1.8252574989159953 1.6989700043360187 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV[RD]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV[RD]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[VP]{[YC]|[HE]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A[VP]{[YC]|[HE]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7397;4.4661;4.4479;4.0068;3.3758;3.1621;2.8885 +;-;-;-;-;-;- + 121 NaN NaN 119047.7 NaN 11450 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14770 65.102 NaN 574710 35 0 100050 0.261 + -1 LFLPKCCIL 9 71 582.3191939724067 1162.6238350116132 2 582.3192749023438 MULTI HCD FTMS 0 0 0 14761 93383.2421875 0.5189125903078705 -3 0.0646209716796875 9 2 Carbamidomethyl (C) _LFLPKC(Carbamidomethyl (C))C(Carbamidomethyl (C))IL_ REV__ENST00000398576.6_1_13:46701143-46701437:-|nuORF 16.942295170755138 0.21397866736869717 2 {I|L}{M(Oxidation (M))|F}N{I|L}{[SA]|[TG]}{I|L}{I|L} 8 -1 45.597 0 0 3.9219 0 0 0 288.11164270572505 288.11164270572505 26.132900219968107 0 0 0 0 1.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F}N{I|L}{[SA]|[TG]}{I|L}{I|L} 3.9219 - 249 + NaN NaN 176009.3 NaN 11451 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14771 65.106 NaN 186090 35 0 42582 0.262 + 34149 YPASTVQIL 9 43 496.2764561845071 990.5383594358142 2 496.27642822265625 MULTI HCD FTMS 0 0 0 14761 68796.5546875 0.22466806070709283 -8 0.19559478759765625 10 Unmodified _YPASTVQIL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 17.11289562659939 0.2125047172822487 2 Q{I|L}{I|L} 3 6 40.445 0 0 4.0832 0 0 618.3012562482437 0 618.3012562482437 0 27.346368802282015 0 0 0 1 0 0 0.4247425010840047 + Q{I|L}{I|L} 4.0832 + + 27 NaN NaN 117566.8 NaN 11452 3317 14761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14773 65.111 NaN 253090 35 0 21921 0.327 + 33799 YLGYLKQLL 9 60 555.8291638632166 1109.6437747932332 2 555.8130493164062 MULTI HCD FTMS 0 0 0 14772 31375.0390625 0.5056160960971547 -1 0.03614044189453125 1 Unmodified _YLGYLKQLL_ REV__DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 16.942295170755138 0.21397866736869717 2 [Y{I|L}]DK 4 -1 30.802 0 0 2.7758 0 0 0 587.3514523657519 587.3514523657519 5.6246936830414995 0 0 0 0 0 2 0 0 [Y{I|L}]DK 2.7758 - 42 NaN NaN 124994.8 NaN 11453 3318 14772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14774 65.115 NaN 394910 35 0 142770 0.264 -1 PEFCKILYF 9 61 406.20802321292973 NaN 0 406.21685791015625 PEAK HCD FTMS 0 0 0 14772 8537.6279296875 0.7893105030424798 2 -0.05226898193359375 2 Carbamidomethyl (C) _PEFC(Carbamidomethyl (C))KILYF_ ENST00000551007.1_1_12:113379873-113380056:+|nuORF 5.296884461304476 0.2695788793730278 2 {I|L}R{I|L}Y 4 -1 21.938 0 0 2.7071 0 0 99.99084004479387 162.0560244195922 262.0468644643861 0 0 0 0 0 0 0 0 0 {I|L}R{I|L}Y 2.7071 - 20 + NaN NaN 146982.4 NaN 11454 3318 14772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14775 65.119 NaN 187000 35 0 28603 0.261 + 271 AFLKVSSVF 9 44 499.28941512152693 996.5642773098539 2 499.2900085449219 MULTI HCD FTMS 0 0 0 14772 53188.83984375 0.31456504346321845 4 -0.09770965576171875 3 Unmodified _AFLKVSSVF_ ENSG00000100401|ENST00000356244|RANGAP1 31.26834338654808 0.10542797264966089 2 {I|L}SV{M(Oxidation (M))|F} 4 5 37.907 0 0 3.8038 0 0 532.3017783858289 0 532.3017783858289 0 23.954875462954845 0 0 0 1.3494850021680094 0 0 0 {I|L}SV{M(Oxidation (M))|F} 3.8038 - 92 + NaN NaN 112393.1 NaN 11455 3318 14772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14776 65.122 NaN 132880 35 0 29503 0.261 -1 YLLNRAMCVF 10 46 434.88225543735075 NaN 0 434.8822937011719 PEAK HCD FTMS 0 0 0 14772 51959.10546875 0.4485699247103027 50 -1.2887802124023438 4 Carbamidomethyl (C),Oxidation (M) _YLLNRAM(Oxidation (M))C(Carbamidomethyl (C))VF_ ENST00000461347.5_1_2:232319904-232323320:-|nuORF 2.0860074813731053 0.33839895573887124 2 A 1 -1 6.9897 0 0 0.8055 0 0 211.471467806539 582.2076510065061 793.6791188130451 0 0 0 0 0 0 0 0 0 A 0.8055 + + 2 + NaN NaN 106269 NaN 11456 3318 14772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14777 65.125 NaN 212770 35 0 17348 0.261 + 17216 LYNPVEGLL 9 60 509.28438043355186 1016.5542079339037 2 509.2837219238281 MULTI HCD FTMS 0 0 0 14772 30708.376953125 0.7730874398218466 -1 0.03614044189453125 5 Unmodified _LYNPVEGLL_ REV__ENST00000464590.1_1_11:3844931-3845577:+|nuORF 13.042465956692817 0.2476723265019929 2 E[RP]{I|L}{I|L} 5 -1 29.833 0 0 2.9347 0 0 390.19073240295035 0 390.19073240295035 0 15.140143618001218 0 0 0 1 0 0 0 E[RP]{I|L}{I|L} 2.9347 - 18 NaN NaN 137005.6 NaN 11457 3318 14772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14779 65.13 NaN 6886700 35 0 1978300 0.327 + 23193 RFLNDPGHLLW 11 121 456.57865725541933 1366.714142366458 3 456.57904052734375 MULTI HCD FTMS 0 0 0 14778 516313.625 0.14606394506805317 -1 0.019622802734375 1 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 74.30644344067612 0.011153021318552522 2 [R{M(Oxidation (M))|F}]{I|L}NDP{[HG]|PP}{I|L}{I|L}W 11 0 + 93.76 0 0 6.8603 6.8603 88.904 0 0 0 5.606673061697364 70.48001702341291 5.606673061697364 8.476184837638243 0 2.7302046884880937 0 0.3494850021680094 1.274227503252014 + + [R{M(Oxidation (M))|F}]{I|L}NDP{[HG]|PP}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[HG]|PP}PDNV{I|L}GE;[R{M(Oxidation (M))|F}]{I|L}GGDP{[HG]|PP}{I|L}{I|L}W;{M(Oxidation (M))|F}G{I|L}{I|L}{[HG]|PP}PD{[NV]|[RG]}{I|L}W;{M(Oxidation (M))|F}G{I|L}{I|L}[YQ]DN[TA]{I|L}{I|L};[R{M(Oxidation (M))|F}]{I|L}[HA]PD{[NV]|[RG]}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}[YQ]DNV{I|L}[VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[NV]|[RG]}D[YQ]{I|L}{I|L}[VS] 6.8603;6.2401;6.1923;6.0981;5.1821;5.1421;4.8391;4.6613 +;-;-;-;-;-;-;- + 1400 NaN NaN 1134842.1 NaN 11458 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14780 65.135 NaN 731460 35 0 54729 0.261 + 6573 FPLDLDVKM 9 101 547.2840734785718 1092.5535940239436 2 547.2843017578125 MULTI HCD FTMS 0 0 0 14778 130792.7265625 0.1730183959671111 -15 0.39897918701171875 2 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 100.0907132914201 0.004261551473353346 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 100.02 0 0 9.1547 9.1547 89.088 0 0 0 0.45757490560674796 10 0.45757490560674796 0.45757490560674796 0 3.3494850021680094 2 1.0484550065040281 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};[{I|L}P]D{I|L}D{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{I|L}D{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F} 9.1547;9.1128;7.6481;7.4205;7.045;6.1893;6.0761;5.8139;5.7007;5.3432 +;+;-;-;-;-;-;-;-;- + 3117 NaN NaN 205119.6 NaN 11459 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14781 65.138 NaN 696310 35 0 79621 0.261 + 6677 FPNIVIKGSEL 11 94 608.8501515715324 1215.6857502098646 2 608.8505249023438 MULTI HCD FTMS 0 0 0 14778 78310.0078125 0.08843953497252605 -6 0.1531982421875 3 Unmodified _FPNIVIKGSEL_ ENSG00000174231|ENST00000304992|PRPF8 98.72992552434107 0.017929070989540323 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K[SG]{I|L}E 11 2 + 83.936 0 0 6.9044 6.9044 86.301 0 0 0 6.835394982265612 48.04046043094753 6.835394982265612 1.8045606445813007 0 2.5 1.6989700043360187 0 0.9049471895720985 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K[SG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K[SG]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GG{I|L}V{I|L}K[SG]{I|L}E;{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}V{I|L}K[SG]{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GG{I|L}V{I|L}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GG{I|L}V{I|L}K[SG]E{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}V{I|L}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E;{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}V{I|L}K[SG]E{I|L};[NP]{M(Oxidation (M))|F}{I|L}V{I|L}K[SG]{I|L}E 6.9044;6.756;6.7375;5.4091;5.306;5.2577;5.2422;5.1575;5.1391;4.7031 -;-;+;-;-;-;-;-;-;- + 3081 NaN NaN 191499.2 NaN 11460 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14782 65.141 NaN 555520 35 0 53098 0.262 + 18126 MPDFDLHL 8 72 502.2308257089257 1002.4470984846514 2 502.2314453125 MULTI HCD FTMS 0 0 0 14778 52826.22265625 0.04777145890387499 -19 0.493743896484375 4 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 101.72198241140316 0.04261147255216747 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 62.912 0 0 6.2759 6.2759 92.439 0 0 0 29.469034597845436 9.731975075880328 9.731975075880328 26.22486274231747 0 2.055462187404089 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ] 6.2759;3.6598;1.9947;0.91761 +;-;-;- + 295 + NaN NaN 168133.5 NaN 11461 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14783 65.145 NaN 501810 35 0 104310 0.261 + 8384 GYMEGYYTF 9 68 573.7261901080524 1145.4378272829047 2 573.7262573242188 MULTI HCD FTMS 0 0 0 14778 74347.6796875 0.1909752661170712 11 -0.29741668701171875 5 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 96.28474662873226 0.004361282420133734 2 [YT]CEGYYT{M(Oxidation (M))|F} 9 2 + 97.802 0 0 8.5384 8.5384 98.132 0 0 0 19.621892823592972 72.11548792976544 19.621892823592972 97.80185028817556 0 2.8494850021680094 1.3979400086720375 0.8494850021680094 0 [YT]CEGYYT{M(Oxidation (M))|F} 8.5384 - 152 NaN NaN 173236.2 NaN 11462 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14784 65.148 NaN 227570 35 0 41085 0.261 -1 0 62 593.1551232641365 592.1478467975364 1 593.1580200195312 MULTI HCD FTMS 0 0 0 14778 79695.9609375 0.5913140664246478 52 -1.351104736328125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 116697.5 NaN 11463 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14785 65.151 NaN 265920 35 0 22088 0.261 + -1 NWRAEMLSHL 10 66 636.8116555662026 1271.608758199205 2 636.8120727539062 MULTI HCD FTMS 0 0 0 14778 27238.935546875 0.20086604224647472 -2 0.05576324462890625 7 Oxidation (M) _NWRAEM(Oxidation (M))LSHL_ REV__ENSG00000173821|ENST00000582970|RNF213;REV__nc|ENSG00000173821|Q63HN8-4|RNF213;REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__RNF213-CSNK1D|2|fusion 13.042465956692817 0.38911719078024076 2 SY[{I|L}T]YYH{I|L} 8 -1 37.177 0 0 2.9236 0 0 213.09710890937657 0 213.09710890937657 0 25.18745656177387 0 0 0 0.805462187404089 0 0.805462187404089 0 SY[{I|L}T]YYH{I|L} 2.9236 - 115 NaN NaN 124457 NaN 11464 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14786 65.155 NaN 246340 35 0 10809 0.261 + 2474 DRNNEMSGLF 10 62 591.7640398893187 1181.5135268454374 2 591.7642211914062 MULTI HCD FTMS 0 0 0 14778 10540.3916015625 0.11162613097182413 3 -0.07808685302734375 8 Unmodified _DRNNEMSGLF_ REV__ENSG00000070182|ENST00000644917|SPTB;REV__nc|ENSG00000070182|P11277-3|SPTB;REV__nc|ENSG00000070182|P11277|SPTB 10.799506525563784 0.4100970765206026 2 N{I|L}{M(Oxidation (M))|F} 3 -1 28.94 0 0 2.4494 0 0 789.3108998029312 0 789.3108998029312 0 22.486512420283233 0 0 0 0.5 0 0 0.4247425010840047 N{I|L}{M(Oxidation (M))|F} 2.4494 - 68 NaN NaN 118869.8 NaN 11465 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14787 65.158 NaN 607710 35 0 71733 0.261 + 14604 LFQNQAALF 9 87 526.282157040983 1050.5497611487658 2 526.2816772460938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LFQNQAALF_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant 18.13498045792455 0.20367413111508956 2 R{I|L}HH 4 -1 31.542 0 0 3.0025 0 0 489.22303177962107 0 489.22303177962107 0 12.95880017344075 0 0 0 0 0 0 0.2614393726401688 R{I|L}HH 3.0025 - 341 NaN NaN 180118.4 NaN 11466 3319 14778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14789 65.163 NaN 886730 35 0 38009 0.327 + 27200 SYNNFFRMF 9 103 621.2737767427004 1240.5330005522007 2 621.275634765625 MULTI HCD FTMS 0 0 0 14788 446158.4375 0.08080018057679354 -44 1.1906852722167969 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 133.0521902211835 0.0004198702180815479 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 76.781 0 0 6.1893 6.1893 88.215 0 0 0 4.38615164412812 36.14087768686528 4.38615164412812 9.208187539523735 0 3 0 0.9604093769761874 1.4559771852360797 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NS]YN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[NS]YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}AQ[DV]MR{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NN[MT];{[QC]|[C(Carbamidomethyl (C))A]}{M(Oxidation (M))|F}Q[KQ]NN[MT];[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP]SNN[MT] 6.1893;5.447;5.447;4.6989;4.1037;3.9566;2.2751;2.1516;2.1243;2.0238 +;-;-;-;-;-;-;-;-;- + 4593 NaN NaN 220123.2 NaN 11467 3320 14788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14791 65.17 NaN 4889900 35 0 470400 0.327 + 13270 KYMDINFDF 9 110 604.7681072670384 1207.5216616008768 2 604.7686767578125 MULTI HCD FTMS 0 0 0 14790 2821859 0.8237927435909655 1 -0.038238525390625 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 154.7525637096362 3.8021791163654463E-06 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 90.276 0 0 7.4761 7.4761 89.47 0 0 0 2.632192780232785 59.5622223880288 2.632192780232785 7.0438985588690315 0 2.6307196863200843 0 1.2104093769761874 1.2302046884880937 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};KY{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};KY{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};KY{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}P]{[HG]|PP}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};KY{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.4761;6.8928;6.7136;6.1087;5.8911;5.6387;5.5454;5.3461;5.1311;4.5438 +;+;-;-;-;-;-;-;-;- + 7100 NaN NaN 600664.6 NaN 11468 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14792 65.174 NaN 4824400 35 0 753880 0.216 + 5195 FFDAELSQM 9 91 552.2391290246032 1102.4637051160064 2 552.2396850585938 MULTI HCD FTMS 0 0 0 14790 3196816.5 0.8879540192850129 5 -0.14312744140625 2 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 99.958 3.7236 1.2659 9.0668 9.0668 68.82 0 0 0 0 54.933276729180484 0 0 0 3.2302046884880937 0 1.805462187404089 0.9916440611282625 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9.0668 + + 2761 + NaN NaN 597929.8 NaN 11469 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14793 65.177 NaN 1948500 35 0 182510 0.261 + 9819 HYNWLIYHL 9 102 629.82190727017 1257.6292616071398 2 629.822021484375 MULTI HCD FTMS 0 0 0 14790 1150141.625 0.6613578866237215 1 -0.038238525390625 3 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 126.56589448801843 0.0008132384440316759 2 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 107.41 0 0 8.5409 8.5409 91.393 0 0 0 10.848396689760094 7.7815125038364386 7.7815125038364386 7.7815125038364386 0 2.774227503252014 1.5228787452803376 0 1.3807196863200843 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}YH{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}{I|L}{I|L}YHYH{I|L};HYNW{I|L}{I|L}{I|L}YH;{[WN]|[YH]}NW{I|L}Y{I|L}{I|L}H 8.5409;7.9222;7.8087;7.6783;7.4861;7.4018;7.19;6.9637;6.9164;6.8673 +;-;-;+;-;-;-;-;-;- + 4168 NaN NaN 393784.9 NaN 11470 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14794 65.18 NaN 1047700 35 0 243680 0.262 + 24709 RYLTVAAVF 9 74 520.3003137195551 1038.5860745059101 2 520.3005981445312 MULTI HCD FTMS 0 0 0 14790 319499.28125 0.00852278266972673 54 -1.4098892211914062 4 Unmodified _RYLTVAAVF_ ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF 29.081581746732265 0.1154664336125038 2 AAV{M(Oxidation (M))|F} 4 5 47.295 0 0 4.5538 0 0 632.3646717755875 0 632.3646717755875 0 40.84121882396211 0 0 0 1.5356668758921828 0 0 0 + AAV{M(Oxidation (M))|F} 4.5538 + + 50 NaN NaN 240771.9 NaN 11471 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14795 65.183 NaN 1117400 35 0 197890 0.261 + 9100 HPFHILIAL 9 84 530.8186649865431 1059.6227770398862 2 530.81884765625 MULTI HCD FTMS 0 0 0 14790 236601.9375 0.5273823591794685 1 -0.038238525390625 5 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 67.41302359171755 0.009925318700911543 2 {I|L}{I|L}A{I|L} 4 5 46.938 0 0 4.4297 0 0 631.322648261187 0 631.322648261187 0 23.460156505745005 0 0 0 1.5 0 0 0 + {I|L}{I|L}A{I|L} 4.4297 + + 238 NaN NaN 275559.2 NaN 11472 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14796 65.187 NaN 1389900 35 0 219080 0.261 + -1 YGLSRRTIMDR 11 91 461.91007930233195 1382.7084085071958 3 461.90985107421875 MULTI HCD FTMS 0 0 0 14790 241335.796875 0.6963534959395924 1 -0.038238525390625 6 Oxidation (M) _YGLSRRTIM(Oxidation (M))DR_ REV__ENSG00000070756|ENST00000318607|PABPC1;REV__ENSG00000090621|ENST00000372858|PABPC4;REV__nc|ENSG00000070756|P11940-2|PABPC1;REV__nc|ENSG00000090621|Q13310-2|PABPC4;REV__nc|ENSG00000090621|Q13310|PABPC4 4.11662792887243 0.40086653484894175 2 [R{M(Oxidation (M))|F}]{I|L}ND 5 -1 30.005 0 0 2.17 0 0 0 734.3621702568768 734.3621702568768 9.318722087674658 0 0 0 0 1 0 0 0.3807196863200844 [R{M(Oxidation (M))|F}]{I|L}ND 2.17 - 222 NaN NaN 297410.6 NaN 11473 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14797 65.19 NaN 408430 35 0 104340 0.261 + 1939 DAFKDFVV 8 66 470.742228831779 939.469904730358 2 470.7421569824219 MULTI HCD FTMS 0 0 0 14790 295263.78125 0.921531293490409 1 -0.038238525390625 7 Unmodified _DAFKDFVV_ ENSG00000049130|ENST00000644744|KITLG;nc|ENSG00000049130|P21583-2|KITLG;nc|ENSG00000049130|P21583-3|KITLG 32.78568957990786 0.32360605643721263 2 {[DA]|[EG]}{M(Oxidation (M))|F} 3 5 37.447 0 0 3.986 0 0 0 603.3149419220174 603.3149419220174 11.249387366082999 0 0 0 0 1 1.6989700043360187 0 0 + {[DA]|[EG]}{M(Oxidation (M))|F} 3.986 + + 94 NaN NaN 152768.7 NaN 11474 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14798 65.193 NaN 575990 35 0 43761 0.261 + 11463 IYQFIMDRF 9 84 624.807632095184 1247.6007112571679 2 624.8080444335938 MULTI HCD FTMS 0 0 0 14790 327310.46875 1 0 0 8 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 73.1962812333195 0.00805395026373928 2 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 108.2 0 0 8.6725 8.6725 92.974 0 0 0 80.81669420019658 9.889917747712644 9.889917747712644 9.208187539523749 0 2.885151878060192 2 0.4247425010840047 0.3494850021680094 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]{[WT]|[RM]}T{M(Oxidation (M))|F}D[VG]{M(Oxidation (M))|F};{I|L}[HA]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 8.6725;7.9344;7.1163;6.3782;5.5639;4.8712;4.6565;4.5609;4.1739;3.7927 +;-;+;-;-;-;-;-;-;- + 762 + NaN NaN 178843 NaN 11475 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14799 65.197 NaN 149070 35 0 22706 0.264 + 9827 HYNWLIYHL 9 46 420.21686532951617 1257.6287665887485 3 420.2170715332031 MULTI HCD FTMS 0 0 0 14790 90178.265625 0.7177527114821787 1 -0.038238525390625 9 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 12.240655878213236 0.2545997876781172 2 {I|L}{I|L} 2 7 19.464 0 0 1.5477 0 0 600.2437090709735 428.1957186334594 1028.439427704433 0 0 0 0 0 1 0 0 0 + {I|L}{I|L} 1.5477 + + 21 + NaN NaN 106142.8 NaN 11476 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14800 65.2 NaN 205520 35 0 13642 0.261 + -1 WCTQLLVRFA 10 55 647.3433463770987 1292.6721398209972 2 647.3439331054688 MULTI HCD FTMS 0 0 0 14790 62370.8515625 0.3549414930017101 5 -0.14312744140625 10 Carbamidomethyl (C) _WC(Carbamidomethyl (C))TQLLVRFA_ REV__ENST00000520713.5_1_8:101563216-101563492:-|nuORF 14.405379775768559 0.37636895476610294 2 SGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]} 9 -1 56.309 0 0 4.356 0 0 344.1272312290035 0 344.1272312290035 0 56.30896262173842 0 0 0 1.8851518780601921 0 0 0 SGS{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{[NV]|[RG]} 4.356 - 90 + NaN NaN 120419.8 NaN 11477 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14801 65.203 NaN 182440 35 0 10898 0.261 + 25028 RYYLKFNFL 9 65 632.3474894696266 1262.680426006053 2 632.3471069335938 MULTI HCD FTMS 0 0 0 14790 55806.953125 0.3443224767460413 -4 0.095611572265625 11 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 10.073929032068715 0.27331982688540024 2 YYR{I|L}K{M(Oxidation (M))|F} 6 5 43.135 0 0 3.4161 0 0 0 389.1824151020093 389.1824151020093 37.44850021680094 0 0 0 0 0.25 1.5228787452803376 0 0 YYR{I|L}K{M(Oxidation (M))|F} 3.4161 - 103 NaN NaN 134580.6 NaN 11478 3321 14790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14803 65.208 NaN 3329700 35 0 388530 0.327 + 27305 SYQKVIELF 9 103 563.8107231126356 1125.6068932920712 2 563.8109130859375 MULTI HCD FTMS 0 0 0 14802 2110248.75 0.59601495171577 2 -0.0625 1 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 114.18643581695662 0.002258955990713129 2 {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F} 9 0 + 86.804 0 0 7.7118 7.7118 88.786 0 0 0 4.368128451160516 11.817496819840656 4.368128451160516 4.368128451160516 0 3.274227503252014 0 0.5796896906561032 0.6203715150305281 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}V[YT]{I|L}E{I|L}{M(Oxidation (M))|F};[KQ]YSV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}NK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}V[YT]E{I|L}{M(Oxidation (M))|F} 7.7118;7.3237;6.8937;6.6619;6.6195;6.4734;6.2738;5.8438;5.6722;5.5849 +;-;-;-;-;-;-;-;-;- + 1265 NaN NaN 411120.9 NaN 11479 3322 14802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14804 65.213 NaN 305710 35 0 29270 0.261 -1 MLFGEGRSQHL 11 75 645.8166627897197 1289.6187726462392 2 645.8175048828125 MULTI HCD FTMS 0 0 0 14802 94805.890625 0.9417165190656956 1 -0.02292633056640625 2 Oxidation (M) _M(Oxidation (M))LFGEGRSQHL_ ENST00000358598.6_1_17:66526858-66526924:+|nuORF 5.731851221503515 0.39378271418728467 2 {I|L}[RP]{[QN]|[E{I|L}]|[KN]} 5 -1 10.458 0 0 0.8109 0 0 663.256311736575 0 663.256311736575 0 3.0102999566398108 0 0 0 0 0 0.6989700043360187 0 {I|L}[RP]{[QN]|[E{I|L}]|[KN]} 0.8109 - 60 + NaN NaN 141678 NaN 11480 3322 14802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14805 65.216 NaN 351940 35 0 29290 0.263 + 20144 NYISGIQTI 9 74 504.771661527656 1007.5287701221121 2 504.7715148925781 MULTI HCD FTMS 0 0 0 14802 46069.24609375 0.03687299635616079 21 -0.5295486450195312 3 Unmodified _NYISGIQTI_ ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 49.55428908609986 0.03219431099695407 2 QT{I|L} 3 6 35.005 0 0 3.4744 0 0 647.3277631897038 0 647.3277631897038 0 14.943415770716157 0 0 0 0.8807196863200843 0 0 0 + QT{I|L} 3.4744 + + 189 NaN NaN 149851.7 NaN 11481 3322 14802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14806 65.22 NaN 570950 35 0 24814 0.261 + 22716 QYASAFHFL 9 84 542.2667660525767 1082.5189791719533 2 542.2670288085938 MULTI HCD FTMS 0 0 0 14802 44819.75390625 0.05169971253988777 16 -0.39876556396484375 4 Unmodified _QYASAFHFL_ ENSG00000140463|ENST00000268057|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4 18.13498045792455 0.20367413111508956 2 [YQ]ASA{M(Oxidation (M))|F}H{I|L} 8 1 34.959 0 0 3.2294 0 0 0 162.0560701959594 162.0560701959594 14.024174299985006 0 0 0 0 0 1.3010299956639813 0 0 [YQ]ASA{M(Oxidation (M))|F}H{I|L} 3.2294 - 268 + NaN NaN 165751.5 NaN 11482 3322 14802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14807 65.223 NaN 247420 35 0 21665 0.261 + 4868 FAEAVDSIF 9 52 499.7461376028678 997.4777222725356 2 499.74615478515625 MULTI HCD FTMS 0 0 0 14802 33963.23046875 0.34845088889455306 16 -0.39876556396484375 5 Unmodified _FAEAVDSIF_ ENSG00000185917|ENST00000332131|SETD4;nc|ENSG00000185917|Q9NVD3-3|SETD4;nc|ENSG00000185917|Q9NVD3-4|SETD4 16.942295170755138 0.21397866736869717 2 VYA{I|L} 4 7 27.696 0 0 2.7766 0 0 533.2164784162125 0 533.2164784162125 0 10.70615965204567 0 0 0 0.805462187404089 0 0 0 VYA{I|L} 2.7766 - 123 NaN NaN 132128.1 NaN 11483 3322 14802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14808 65.226 NaN 111330 35 0 13027 0.262 + 5384 FGRSTPPPPPR 11 43 403.55592256023675 1207.6459382809103 3 403.89031982421875 MULTI HCD FTMS 0 0 0 14802 28240.505859375 0.6412280718871003 1 -0.02292633056640625 6 Unmodified _FGRSTPPPPPR_ REV__ENST00000505364.1_1_4:1259420-1259672:+|nuORF 1.0135738785822086 0.41447547578978133 2 P 1 -1 9.6041 0 0 0.79527 0 0 645.323513763518 462.24790369205317 1107.5714174555712 0 0 0 0 0 0.5 0 0 0 P 0.79527 + + 6 + NaN NaN 97873.6 NaN 11484 3322 14802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14810 65.231 NaN 798020 35 0 86358 0.327 + 6522 FPISEETIKL 10 92 588.8292095670373 1175.6438662008745 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14809 662350 0.3394589221583432 7 -0.19640350341796875 1 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 114.4966697963812 4.563610280778346E-05 2 {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L} 10 0 + 105.05 0 0 8.9358 8.9358 91.066 0 0 0 47.100234591511104 0.72051538364164 0.72051538364164 5.912033754299287 0 3.2034021960761265 0 0.9258337024346173 0.2614393726401688 + + {M(Oxidation (M))|F}P{I|L}SEET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}SEET{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}SEET{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}EET{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}S{[{M(Oxidation (M))|F}D]|MM}P{I|L}K{I|L};[{I|L}P]{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}D]|MM}P{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WE]M{I|L}K{I|L};{[TV]|[{I|L}S]}P{M(Oxidation (M))|F}EET{I|L}K{I|L};[{I|L}P]S{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}P{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WE]{I|L}M{I|L}K{I|L} 8.9358;8.4329;7.7516;7.0702;6.4186;5.7372;5.6054;5.4753;5.0558;5.0293 +;+;-;-;-;-;-;-;-;- + 1191 + NaN NaN 204094 NaN 11485 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14811 65.236 NaN 1990000 35 0 854020 0.264 + 35877 YYRPRFFLL 9 57 425.57289013442517 1273.6968410034756 3 425.572998046875 MULTI HCD FTMS 0 0 0 14809 871722.5 0.6244252715583493 -2 0.06116485595703125 2 Unmodified _YYRPRFFLL_ ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 29.84058131909904 0.11198220037953927 2 YY 2 7 36.198 0 0 2.842 0 0 0 944.5481925647882 944.5481925647882 5.228787452803374 0 0 0 0 0 2 0 0 + YY 2.842 + + 15 + NaN NaN 387175.9 NaN 11486 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14812 65.239 NaN 1043100 35 0 88410 0.261 + 29104 TYGEIFEKF 9 101 567.2792195549672 1132.5438861767343 2 567.2791137695312 MULTI HCD FTMS 0 0 0 14809 399081.875 0.018980733276482083 85 -2.2443466186523438 3 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 96.36657018975838 0.004359138328518304 2 DYSPY{M(Oxidation (M))|F}KT{I|L} 9 7 + 81.129 0 0 7.1634 7.1634 88.341 0 0 0 7.987708750785728 5.8985760252164 5.8985760252164 5.8985760252164 0 2.3979400086720375 2 1.0228787452803376 0 DYSPY{M(Oxidation (M))|F}KT{I|L};DYSPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};[YT]GE[YK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[DS]|[MA]|[CV]|TT}TE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}SPYVV[YK];[YT]W[YT][VS]T{I|L} 7.1634;6.6426;6.4581;5.1991;5.0695;3.8105;3.2424;2.8873;2.7056;2.4838 -;-;-;-;-;-;-;-;-;- 2131 + NaN NaN 249043.9 NaN 11487 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14813 65.243 NaN 1136600 35 0 188330 0.262 + 10152 IFRRSLCMRSM 11 111 467.241897757729 1398.703863873387 3 467.2417297363281 MULTI HCD FTMS 0 0 0 14809 245973.890625 0.4082721491181433 2 -0.055755615234375 4 Unmodified _IFRRSLCMRSM_ REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF 4.11662792887243 0.40086653484894175 2 [R{M(Oxidation (M))|F}]{I|L}ND 5 -1 20.445 0 0 1.4617 0 0 0 750.3580903698934 750.3580903698934 1.760941891235671 0 0 0 0 0.4247425010840047 0 0 0 [R{M(Oxidation (M))|F}]{I|L}ND 1.4617 - 344 NaN NaN 254950.1 NaN 11488 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14814 65.246 NaN 1639100 35 0 192840 0.261 + 32122 VYSFGFERL 9 119 559.2874934848479 1116.5604340364957 2 559.2694091796875 MULTI HCD FTMS 0 0 0 14809 252719.3125 0.2127075360215873 10 -0.25494384765625 5 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 61.60191391372663 0.015340508911304802 2 VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}E[R{I|L}] 9 0 + 78.976 0 0 7.0732 7.0732 91.184 0 0 0 19.145293596321125 6.7074145675533 6.7074145675533 9.305234507957891 0 1.079689690656103 1.6989700043360187 0.75 0.3054621874040891 + + VYS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}E[R{I|L}];VYS{[RE]|[WV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AV;VYS{[RE]|[WV]}{M(Oxidation (M))|F}AV{M(Oxidation (M))|F};VY[YQ]{M(Oxidation (M))|F}E[R{I|L}];[YK]N[KS]{M(Oxidation (M))|F}SP{M(Oxidation (M))|F};[YK]GG[KS]{M(Oxidation (M))|F}SP{M(Oxidation (M))|F};[YV]S[NG][KG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YV]S[NG][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;V[QA][TP]G{M(Oxidation (M))|F}E[R{I|L}];[YK]ND[KG]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.0732;6.2398;5.8559;4.9725;3.9098;3.0851;2.7874;2.6522;1.3173;1.0144 +;-;-;-;-;-;-;-;-;- + 5118 + NaN NaN 355398.5 NaN 11489 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14815 65.249 NaN 1101400 35 0 166640 0.261 + 29586 VADPYVVIM 9 75 511.76491871505846 1021.5152844969169 2 511.76495361328125 MULTI HCD FTMS 0 0 0 14809 338231.90625 0.9664109582436167 3 -0.08196258544921875 6 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 48.345845343767074 0.03388484103555672 2 VV{I|L}{M(Oxidation (M))|F} 4 5 50.191 0 0 4.9134 0 0 545.2497963266087 0 545.2497963266087 0 28.1841807438569 0 0 0 1.8252574989159953 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.9134 + + 345 NaN NaN 264861.2 NaN 11490 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14816 65.253 NaN 569670 35 0 37514 0.261 + -1 PFLCFLYIF 9 88 610.3129683410682 NaN 0 610.29248046875 PEAK HCD FTMS 0 0 0 14809 21574.90625 0.07360055725159997 -17 0.45096588134765625 7 Carbamidomethyl (C) _PFLC(Carbamidomethyl (C))FLYIF_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|43|1|sense 5.230669730166228 0.26989974671959066 2 PD{I|L}V{I|L} 5 -1 12.167 0 0 0.99843 0 0 147.98721574225493 530.2666109674436 678.2538267096986 0 0 0 0 0 0 0 0 0 PD{I|L}V{I|L} 0.99843 - 144 + NaN NaN 175133.3 NaN 11491 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14817 65.256 NaN 308950 35 0 18446 0.261 + 11755 KDMQEYFDF 9 59 611.7574773502996 1221.5004017673991 2 611.7578125 MULTI HCD FTMS 0 0 0 14809 171532.734375 0.6452576558882103 2 -0.055755615234375 8 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 56.748 0 0 4.6458 0 0 305.13728530097814 0 305.13728530097814 0 50.806117109583475 0 0 0 2.1989700043360187 0 0 0.4247425010840047 {M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6458 - 139 NaN NaN 129221.3 NaN 11492 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14818 65.259 NaN 323690 35 0 94558 0.264 + 25032 RYYLKFNFL 9 48 421.9009688208532 1262.6810770627596 3 421.90087890625 MULTI HCD FTMS 0 0 0 14809 138253.640625 0.9452064935514429 -2 0.06116485595703125 9 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.0567 0 0 984.5171842840662 0 984.5171842840662 0 20.48455006504028 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.0567 + + 4 NaN NaN 149115.8 NaN 11493 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14819 65.263 NaN 184260 35 0 7761.4 0.261 -1 ERCMCHCMA 9 64 578.6948552699649 1155.3751576067298 2 578.695556640625 MULTI HCD FTMS 0 0 0 14809 97455.65625 0.5724204053901384 7 -0.19640350341796875 10 Carbamidomethyl (C),Oxidation (M) _ERCM(Oxidation (M))CHC(Carbamidomethyl (C))MA_ ENST00000302351.8_1_5:73923668-73923869:-|nuORF 1.844237919475145 0.33703635659052655 2 {I|L} 1 -1 5.4846 0 0 0.4747 0 0 380.13351134351916 659.1336153619749 1039.267126705494 0 0 0 0 0 0 0 0 0 {I|L} 0.4747 - 17 + NaN NaN 112633.9 NaN 11494 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14820 65.266 NaN 220510 35 0 47330 0.261 + 8434 GYSIHTYLW 9 47 570.2795001806229 1138.5444474280457 2 570.280029296875 MULTI HCD FTMS 0 0 0 14809 107021.53125 0.7000077058940278 -2 0.06116485595703125 11 Unmodified _GYSIHTYLW_ ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-2|GBA1;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1 28.486842064014134 0.11819662193267319 2 C{I|L}W 3 7 36.198 0 0 3.1793 0 0 718.3450794904312 0 718.3450794904312 0 13.26606256887672 0 0 0 1 0 0 0 C{I|L}W 3.1793 - 10 NaN NaN 129489.5 NaN 11495 3323 14809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14822 65.271 NaN 295370 35 0 70969 0.327 + 34150 YPASTVQIL 9 57 496.2764561845071 990.5383594358142 2 496.27642822265625 MULTI HCD FTMS 0 0 0 14821 114245.6640625 0.3730906570206417 -1 0.03957366943359375 1 Unmodified _YPASTVQIL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 17.11289562659939 0.2125047172822487 2 Q{I|L}{I|L} 3 6 36.198 0 0 3.6544 0 0 618.3016301875668 0 618.3016301875668 0 36.197887582883936 0 0 0 1 0 0 0 + Q{I|L}{I|L} 3.6544 + + 49 NaN NaN 148297.2 NaN 11496 3324 14821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14823 65.275 NaN 303300 35 0 71476 0.261 + 27116 SYMGHFDLL 9 64 549.7498597197784 1097.4851665063568 2 549.7503662109375 MULTI HCD FTMS 0 0 0 14821 108156.765625 0.01284572807680778 181 -4.7623748779296875 2 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 54.773552608820026 0.024892918755467567 2 {M(Oxidation (M))|F}D{I|L}{I|L} 4 5 33.193 0 0 3.0244 0 0 591.2072010724625 0 591.2072010724625 0 6.7363879667912805 0 0 0 0.3494850021680094 0 0.7302046884880937 0 + {M(Oxidation (M))|F}D{I|L}{I|L} 3.0244 + + 54 NaN NaN 142166.9 NaN 11497 3324 14821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14824 65.279 NaN 204860 35 0 12479 0.261 -1 FPYVRDFVM 9 58 595.2892306771762 1188.5639084211523 2 595.28955078125 MULTI HCD FTMS 0 0 0 14821 45972.87109375 0.14010610300237322 25 -0.6138076782226562 3 Oxidation (M) _FPYVRDFVM(Oxidation (M))_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 18.373094154950223 0.20161688160436167 2 M{I|L}YV 4 -1 45.918 0 0 3.8633 0 0 0 679.2847524069886 679.2847524069886 22.730012720637376 0 0 0 0 0 2 0 0 M{I|L}YV 3.8633 - 36 + NaN NaN 126531.6 NaN 11498 3324 14821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14825 65.282 NaN 426810 35 0 58701 0.261 + 14946 LLGPCKFALVC 11 77 582.3191939724067 1162.6238350116132 2 582.31982421875 MULTI HCD FTMS 0 0 0 14821 62278.90234375 0.3460717981052506 4 -0.10097503662109375 4 Unmodified _LLGPCKFALVC_ REV__ENSG00000145743|ENST00000542267|FBXL17;REV__nc|ENSG00000145743|Q9UF56-2|FBXL17;REV__nc|ENSG00000145743|Q9UF56-3|FBXL17 12.240655878213236 0.35042917576941135 2 {I|L}{I|L}[C(Carbamidomethyl (C))C]R{I|L}{I|L} 7 -1 52.963 0 0 4.5555 0 0 0 288.1103914850219 288.1103914850219 40.65630099269626 0 0 0 0 1.774227503252014 0 0 0.3494850021680094 {I|L}{I|L}[C(Carbamidomethyl (C))C]R{I|L}{I|L} 4.5555 - 164 + NaN NaN 150490.8 NaN 11499 3324 14821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14827 65.287 NaN 3236700 35 0 890240 0.326 + 23194 RFLNDPGHLLW 11 95 456.57865725541933 1366.714142366458 3 456.5788879394531 MULTI HCD FTMS 0 0 0 14826 1101086 0.31149471412690766 5 -0.14064788818359375 1 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 59.17704102725264 0.04373365728438054 2 [R{M(Oxidation (M))|F}]{I|L}NDP{[HG]|PP}{I|L}{I|L}W 11 0 + 92.637 0 0 6.7781 6.7781 88.988 0 0 0 5.606673061697379 81.09630757282244 5.606673061697379 9.128498242811006 0 2.642159058960253 0 0.3252574989159953 1.274227503252014 + + [R{M(Oxidation (M))|F}]{I|L}NDP{[HG]|PP}{I|L}{I|L}W;[R{M(Oxidation (M))|F}]{I|L}GGDP{[HG]|PP}{I|L}{I|L}W;{M(Oxidation (M))|F}G{I|L}{I|L}{[HG]|PP}PD{[NV]|[RG]}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{[HG]|PP}PDNV{I|L}GE;{M(Oxidation (M))|F}G{I|L}{I|L}[YQ]DN[TA]{I|L}{I|L};[R{M(Oxidation (M))|F}]{I|L}[HA]PD{[NV]|[RG]}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{[NV]|[RG]}D[YQ]{I|L}{I|L}[VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}[YQ]DNV{I|L}[VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}E[YN]NV{I|L}[VS] 6.7781;6.1102;5.9193;5.2797;5.1709;4.7991;4.2735;4.0616;2.623 +;-;-;-;-;-;-;-;- + 479 NaN NaN 573335.2 NaN 11500 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14828 65.291 NaN 1639800 35 0 193060 0.261 + 6678 FPNIVIKGSEL 11 109 608.8501515715324 1215.6857502098646 2 608.8505859375 MULTI HCD FTMS 0 0 0 14826 885463.8125 1 0 0 2 Unmodified _FPNIVIKGSEL_ ENSG00000174231|ENST00000304992|PRPF8 210.93462674358122 1.1489026180540676E-21 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}KGS{I|L}E 11 2 + 118.63 0 0 9.7583 9.7583 91.146 0 0 0 15.934903007429028 4.1636174254808935 4.1636174254808935 4.1636174254808935 0 3.0114393726401687 1.5228787452803376 0.7856668758921829 1.673877368056628 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}KGS{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}KGSE{I|L};{M(Oxidation (M))|F}PN{I|L}V{I|L}KGSE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}V{I|L}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GG{I|L}V{I|L}KGS{I|L}E;{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}V{I|L}KGS{I|L}E;{M(Oxidation (M))|F}PGG{I|L}V{I|L}KGSE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GG{I|L}V{I|L}KGSE{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}V{I|L}KGSE{I|L};[NP]{M(Oxidation (M))|F}{I|L}V{I|L}KGS{I|L}E 9.7583;9.4158;8.4475;8.3151;7.868;7.758;7.6966;7.5255;7.4155;7.4154 -;+;+;-;-;-;-;-;-;- + 10104 NaN NaN 339819.6 NaN 11501 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14829 65.295 NaN 1443200 35 0 111890 0.261 + 6574 FPLDLDVKM 9 108 547.2840734785718 1092.5535940239436 2 547.2837524414062 MULTI HCD FTMS 0 0 0 14826 714435.5 0.9450868368654513 -9 0.228729248046875 3 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 110.5527297667825 0.0028521687250969148 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 101.27 0 0 9.2692 9.2692 89.377 0 0 0 63.98037715791259 16.478174818886373 16.478174818886373 0.81013628963602 0 3.079689690656103 0 0.6139829889124311 0 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DKV{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]VV{M(Oxidation (M))|F};[{I|L}P]D{I|L}D{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F} 9.2692;9.195;8.2028;7.7496;7.522;6.7857;6.4246;6.3513;6.3114;5.6883 +;+;-;-;-;-;-;-;-;- + 4872 + NaN NaN 309561.8 NaN 11502 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14830 65.298 NaN 578740 35 0 28967 0.261 + 27201 SYNNFFRMF 9 85 621.2737767427004 1240.5330005522007 2 621.2745971679688 MULTI HCD FTMS 0 0 0 14826 306418.25 0.055492954634585534 -39 1.026641845703125 4 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 96.36657018975838 0.004359138328518304 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 68.136 0 0 5.4925 0 0 64.00055296398507 0 64.00055296398507 0 44.01863755803667 0 0 0 2.3737125054200234 0 0 0.3252574989159953 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4925 - 1704 + NaN NaN 189074.9 NaN 11503 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14831 65.302 NaN 292100 35 0 36678 0.261 -1 MVSCLHILAQT 11 73 636.8267861588188 1271.6390193844375 2 636.8118286132812 MULTI HCD FTMS 0 0 0 14826 26190.25390625 0.36204606443742315 -11 0.27715301513671875 5 Carbamidomethyl (C) _MVSC(Carbamidomethyl (C))LHILAQT_ ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 8.155526934196011 0.3831532958467648 2 {[WN]|[YH]}[YT]Y{I|L}YH 8 -1 24.675 0 0 1.9404 0 0 0 128.10269763010356 128.10269763010356 4.600322786351114 0 0 0 0 0 1.3979400086720375 0.805462187404089 0 {[WN]|[YH]}[YT]Y{I|L}YH 1.9404 - 194 NaN NaN 135835.9 NaN 11504 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14832 65.305 NaN 315000 35 0 57587 0.261 + 8385 GYMEGYYTF 9 70 573.7261901080524 1145.4378272829047 2 573.7260131835938 MULTI HCD FTMS 0 0 0 14826 197316.59375 0.5068428383926528 17 -0.421417236328125 6 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 58.678817012210395 0.019429721296335044 2 EEGYYT{M(Oxidation (M))|F} 7 3 52.956 0 0 4.6232 0 0 238.0937243549734 0 238.0937243549734 0 36.50260426274315 0 0 0 1.8494850021680094 0 0.3807196863200844 0 EEGYYT{M(Oxidation (M))|F} 4.6232 - 90 + NaN NaN 146486.2 NaN 11505 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14833 65.308 NaN 241000 35 0 15468 0.261 + 31808 VYMDWYEKF 9 63 648.7838371335808 1295.5531213339616 2 648.783203125 MULTI HCD FTMS 0 0 0 14826 134699.78125 0.05984705930311163 69 -1.7866668701171875 7 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 61.08992128646608 0.016056751534446034 2 [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 86.283 0 0 6.66 6.66 92.818 0 0 0 5.501123851037377 60.341087759491856 5.501123851037377 23.143265708843046 0 2.6989700043360187 1.6989700043360187 0.3252574989159953 0 + + [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}AN{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}AGG{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[W{I|L}]DDK{M(Oxidation (M))|F};YY[YK][PG]D{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}ADDK{M(Oxidation (M))|F} 6.66;4.8736;4.0042;3.2969;3.1334;3.1171;3.0369 +;-;-;-;-;-;- + 350 NaN NaN 119555.3 NaN 11506 3325 14826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14835 65.313 NaN 3457800 35 0 549230 0.327 + 5196 FFDAELSQM 9 100 552.2391290246032 1102.4637051160064 2 552.2396850585938 MULTI HCD FTMS 0 0 0 14834 1930713 0.5362786285780948 10 -0.24478912353515625 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 98.537 2.8432 0.96661 8.9379 8.9379 68.665 0 0 0 0 53.068882425728106 0 0 0 3.1989700043360187 0 1.7614393726401687 0.9247425010840047 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.9379 + + 4206 + NaN NaN 610574.6 NaN 11507 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14836 65.318 NaN 2283600 35 0 262370 0.225 + 13271 KYMDINFDF 9 89 604.7681072670384 1207.5216616008768 2 604.7687377929688 MULTI HCD FTMS 0 0 0 14834 1480578.5 0.4322291881404409 6 -0.15676116943359375 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 117.83759599426817 0.001662893820975323 2 [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 84.24 0 0 6.9763 6.9763 87.655 0 0 0 2.922152515121226 41.62270239046704 2.922152515121226 4.898641557451526 0 2.4916440611282624 0 0.9392404878284264 1.1549471895720984 + + [YK]{M(Oxidation (M))|F}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V[SG]{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}C{[SA]|[TG]}D{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]KDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F} 6.9763;6.5706;6.2137;5.808;5.5573;5.207;5.1527;5.1516;5.0372;4.8914 +;-;-;-;-;-;-;-;-;- + 2684 NaN NaN 356230 NaN 11508 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14837 65.321 NaN 1141800 35 0 106300 0.261 + 9820 HYNWLIYHL 9 85 629.82190727017 1257.6292616071398 2 629.822021484375 MULTI HCD FTMS 0 0 0 14834 905689.125 0.520792076930602 6 -0.15676116943359375 3 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 126.56589448801843 0.0008132384440316759 2 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 110.61 0 0 8.7953 8.7953 93.127 0 0 0 15.808911021802018 11.703555389302522 11.703555389302522 9.208187539523749 0 2.774227503252014 1.5228787452803376 0 1.700679860468595 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}{I|L}YH{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}GGW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}YH{I|L}Y{I|L}H;HYNW{I|L}{I|L}{I|L}YH 8.7953;8.0632;7.8647;7.7962;7.6163;7.5383;7.1325;6.8841;6.8656;6.7414 +;-;-;-;-;+;-;-;-;- + 2102 NaN NaN 266323.5 NaN 11509 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14838 65.324 NaN 865610 35 0 86113 0.263 + 18127 MPDFDLHL 8 79 502.2308257089257 1002.4470984846514 2 502.2314758300781 MULTI HCD FTMS 0 0 0 14834 445263.625 0.40265784478840255 -12 0.3033599853515625 4 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 114.94377779790601 0.029101733901958818 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 56.991 0 0 5.6852 5.6852 90.438 0 0 0 11.122731327798547 8.01924358097537 8.01924358097537 16.22486274231747 0 2.055462187404089 0 0.2614393726401688 0 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ] 5.6852;4.0667;1.9947;0.97037 +;-;-;- + 175 + NaN NaN 212390.9 NaN 11510 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14839 65.327 NaN 1271300 35 0 145880 0.261 + 30651 VPDPKELLL 9 77 512.3078278674773 1022.6011028017546 2 512.3079223632812 MULTI HCD FTMS 0 0 0 14834 455493.96875 0.780059945960225 1 -0.02898406982421875 5 Unmodified _VPDPKELLL_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-3|TACC2 53.40400417844725 0.026808823219830042 2 VPD 3 6 46.146 0 0 4.5126 0 0 0 708.4301449642816 708.4301449642816 -2.1250515093384195 0 -2.1250515093384195 0 0 0.7742275032520141 1.3979400086720375 0.2742275032520141 0 + VPD 4.5126 + + 809 + NaN NaN 285223.9 NaN 11511 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14840 65.331 NaN 452510 35 0 55669 0.261 + 35879 YYRPRFFLL 9 82 637.8556576349469 1273.6967623366936 2 637.8558959960938 MULTI HCD FTMS 0 0 0 14834 130353.4765625 0.5436386351348507 1 -0.02898406982421875 6 Unmodified _YYRPRFFLL_ ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 11.494710602746466 0.2610445893512368 2 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[WT]|[RM]}YH{I|L} 8 7 11.394 0 0 0.89454 0 0 132.17878320271512 0 132.17878320271512 0 2.9773721992422963 0 0 0 0.23020468848809378 0 0.3252574989159953 0 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[WT]|[RM]}YH{I|L} 0.89454 - 163 + NaN NaN 153437.9 NaN 11512 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14841 65.334 NaN 123010 35 0 9426.9 0.264 -1 0 47 459.27975117923575 458.27247471263576 1 459.2798767089844 MULTI HCD FTMS 0 0 0 14834 123052.9296875 0.6600999799004208 -20 0.532928466796875 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102957.2 NaN 11513 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14842 65.337 NaN 457320 35 0 38363 0.261 + 33647 YIYNKIALI 9 71 555.8291638632166 1109.6437747932332 2 555.813720703125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YIYNKIALI_ tr|U7T4I2|U7T4I2_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00348PE=4SV=1 8.593279151180031 0.2858735984551981 2 HA[Q{I|L}] 4 7 8.2762 0 0 0.74585 0 0 642.4017531641301 0 642.4017531641301 0 0.48963451112506284 0 0 0 0 0 0 0.2614393726401688 HA[Q{I|L}] 0.74585 - 114 + NaN NaN 149366.6 NaN 11514 3326 14834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14844 65.342 NaN 738310 35 0 62015 0.327 + 4990 FAYIKYDNEL 10 85 638.3163942701558 1274.6182356071115 2 638.3165893554688 MULTI HCD FTMS 0 0 0 14843 358246.9375 0.38036984182863104 -5 0.13387298583984375 1 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 22.736283301280096 0.29844449404982915 2 {[MS]|[{M(Oxidation (M))|F}A]}YD[KG]DY{I|L}A{I|L} 11 5 + 56.987 0 0 4.4709 4.4709 83.025 0 0 0 1.5487980323444006 32.80572038018018 1.5487980323444006 3.4278753327136613 0 2.2302046884880937 0 0.3494850021680094 0 {[MS]|[{M(Oxidation (M))|F}A]}YD[KG]DY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A{[CA]|SS}A{M(Oxidation (M))|F}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[QA]DY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD[KG]DYA{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A{[NV]|[RG]}YS{I|L};YY[VG][QA]DY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A[KG]DY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A{[CA]|SS}AA{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[TP]{[CA]|SS}A{M(Oxidation (M))|F}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}[KQ]DY{I|L} 4.4709;4.202;3.9995;3.5303;3.3721;3.372;3.2384;3.1992;3.1587;3.0969 -;-;-;-;-;-;-;-;-;- 4645 NaN NaN 195802.9 NaN 11515 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14845 65.347 NaN 532780 35 0 53612 0.261 + 13891 KYQELQVLF 9 64 584.323897458298 1166.633241983396 2 584.3236694335938 MULTI HCD FTMS 0 0 0 14843 305701.125 0.47400865039345036 -5 0.13387298583984375 2 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 45.739877483867886 0.03899552410870734 2 E{I|L}QV{I|L}{M(Oxidation (M))|F} 6 3 67.484 0 0 5.7845 0 0 419.2167225568375 0 419.2167225568375 0 36.332946754800375 0 0 0 2.610924374808178 0 0 0.3494850021680094 + E{I|L}QV{I|L}{M(Oxidation (M))|F} 5.7845 + + 447 NaN NaN 161614.7 NaN 11516 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14846 65.35 NaN 302280 35 0 29726 0.261 + 11464 IYQFIMDRF 9 67 624.807632095184 1247.6007112571679 2 624.8082275390625 MULTI HCD FTMS 0 0 0 14843 143746.890625 0.4391759639524209 6 -0.1439971923828125 3 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 69.33821966488729 0.009302356455414924 2 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 105.34 0 0 8.4435 8.4435 92.693 0 0 0 85.8771376077312 9.889917747712644 9.889917747712644 9.208187539523749 0 2.6237125054200234 2 0.4247425010840047 0.3252574989159953 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]GA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[MD][YR]{I|L}{M(Oxidation (M))|F};[Y{I|L}]GA[MD][YR]{I|L}{M(Oxidation (M))|F};[YQ]{I|L}[MD][YR]{I|L}{M(Oxidation (M))|F} 8.4435;7.7054;6.5342;6.3339;5.2996;4.2114;3.452;3.2517;1.1292 +;-;+;-;-;-;-;-;- + 595 + NaN NaN 135267.4 NaN 11517 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14847 65.354 NaN 269860 35 0 42035 0.262 + 9101 HPFHILIAL 9 69 530.8186649865431 1059.6227770398862 2 530.8189086914062 MULTI HCD FTMS 0 0 0 14843 115907.203125 0.25835551000065826 7 -0.1801605224609375 4 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 56.04830969593885 0.023109620888794903 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{M(Oxidation (M))|F}{I|L}{I|L}A{I|L} 9 2 + 68.548 0 0 6.4691 6.4691 94.368 0 0 0 18.287268505095042 50.360527937172606 18.287268505095042 68.54811556341673 0 1.555462187404089 0 1.110924374808178 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}]{M(Oxidation (M))|F}{I|L}{I|L}A{I|L} 6.4691 - 78 NaN NaN 122111.1 NaN 11518 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14848 65.357 NaN 307160 35 0 19255 0.261 + 25029 RYYLKFNFL 9 70 632.3474894696266 1262.680426006053 2 632.347412109375 MULTI HCD FTMS 0 0 0 14843 115836.2265625 0.7146961837815899 2 -0.05587005615234375 5 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 14.838274106304384 0.23215694253501695 2 {I|L}K{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{I|L} 6 3 26.331 0 0 2.0853 0 0 482.2258473126969 0 482.2258473126969 0 18.37205316164642 0 0 0 0.24299281909993908 0 0 0 + {I|L}K{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{I|L} 2.0853 + + 131 NaN NaN 138012.9 NaN 11519 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14849 65.36 NaN 154400 35 0 23503 0.264 + 1940 DAFKDFVV 8 60 470.742228831779 939.469904730358 2 470.74200439453125 MULTI HCD FTMS 0 0 0 14843 95291.8203125 0.29740997713932704 7 -0.1801605224609375 6 Unmodified _DAFKDFVV_ ENSG00000049130|ENST00000644744|KITLG;nc|ENSG00000049130|P21583-2|KITLG;nc|ENSG00000049130|P21583-3|KITLG 17.11289562659939 0.4678830079548939 2 W{M(Oxidation (M))|F} 2 7 26.766 0 0 2.8491 0 0 0 603.3155611627561 603.3155611627561 5.796896906561031 0 0 0 0 0.7302046884880937 0 0 0 W{M(Oxidation (M))|F} 2.8491 - 30 + NaN NaN 113959.4 NaN 11520 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14850 65.364 NaN 242500 35 0 22164 0.261 -1 GTLLEITAYYM 11 60 645.8166627897197 1289.6187726462392 2 645.8155517578125 MULTI HCD FTMS 0 0 0 14843 61668.71875 0.6125616327597407 6 -0.1439971923828125 7 Oxidation (M) _GTLLEITAYYM(Oxidation (M))_ CON__ENSEMBL:ENSBTAP00000013050 5.731851221503515 0.39378271418728467 2 {I|L}[RP]{[QN]|[E{I|L}]|[KN]} 5 -1 10.77 0 0 0.83512 0 0 663.2587927789277 0 663.2587927789277 0 3.005215510555031 0 0 0 0 0 0.7302046884880937 0 {I|L}[RP]{[QN]|[E{I|L}]|[KN]} 0.83512 - 51 + NaN NaN 129217.9 NaN 11521 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14851 65.367 NaN 91245 35 0 17379 0.264 + 28207 TKYLENSL 8 42 484.2583889555833 966.5022249779666 2 484.2589111328125 MULTI HCD FTMS 0 0 0 14843 65335.69921875 0.5902713705412928 7 -0.1801605224609375 8 Unmodified _TKYLENSL_ REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1 3.944395688203298 0.5361403129012058 2 V{I|L} 2 -1 20.969 0 0 2.1696 0 0 736.3405628888687 0 736.3405628888687 0 18.494850021680094 0 0 0 0 0 0 0 V{I|L} 2.1696 - 3 NaN NaN 105703.3 NaN 11522 3327 14843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14853 65.372 NaN 1405400 35 0 188480 0.327 + 27306 SYQKVIELF 9 104 563.8107231126356 1125.6068932920712 2 563.8108520507812 MULTI HCD FTMS 0 0 0 14852 656787.0625 0.18550178472726492 8 -0.1862030029296875 1 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 93.93812099017352 0.0044227730261779084 2 {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F} 9 0 + 80.015 0 0 7.1086 7.1086 86.798 0 0 0 2.149640954996954 9.797210635437935 2.149640954996954 2.149640954996954 0 3.1861818737241734 0 0.2742275032520141 0.3807196863200844 + + {[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V[YT]{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}NK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}V[YT]E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V{I|L}[YT]E{I|L}{M(Oxidation (M))|F} 7.1086;6.9177;6.2906;5.9217;5.9023;5.7113;5.5385;5.0842;4.9605;4.7267 +;-;-;-;-;-;-;-;-;- + 1002 NaN NaN 307948.8 NaN 11523 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14854 65.376 NaN 482290 35 0 42861 0.261 + 6523 FPISEETIKL 10 88 588.8292095670373 1175.6438662008745 2 588.8294677734375 MULTI HCD FTMS 0 0 0 14852 288185.90625 0.14769725540401654 12 -0.2875823974609375 2 Unmodified _FPISEETIKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 81.9152076656658 0.003466872489127602 2 {I|L}M{I|L}SEET{I|L} 8 4 79.95 0 0 6.8006 0 0 0 256.16645227603755 256.16645227603755 54.904178299399874 0 0 0 0 2.055462187404089 1.5228787452803376 0.7614393726401688 0 {I|L}M{I|L}SEET{I|L} 6.8006 - 760 + NaN NaN 164029.8 NaN 11524 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14855 65.38 NaN 743800 35 0 104370 0.262 + 2508 DSILAEKTV 9 64 488.27003492163306 NaN 0 488.2532653808594 PEAK HCD FTMS 0 0 0 14852 8483.787109375 1 0 0 3 Unmodified _DSILAEKTV_ ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B;nc|ENSG00000139364|Q14DG7|TMEM132B 21.74664581756881 0.17567436591797916 2 SD{I|L}{[NV]|[RG]}D 6 7 30.891 0 0 3.1698 0 0 131.1281196499221 197.09272180728752 328.22084145720964 0 0 0 0 0 0 0 1.5 0.3494850021680094 SD{I|L}{[NV]|[RG]}D 3.1698 - 92 + NaN NaN 217134.8 NaN 11525 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14856 65.383 NaN 757760 35 0 83070 0.261 + -1 NYAICNKTNF 10 97 622.7903798824855 1243.5662068317708 2 622.7905883789062 MULTI HCD FTMS 0 0 0 14852 223419.328125 0.6974377661758484 12 -0.2875823974609375 4 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ REV__ENSG00000134539|ENST00000336164|KLRD1;REV__ENST00000539374.1_1_12:10464095-10467389:+|nuORF;REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF;REV__nc|ENSG00000134539|Q13241-2|KLRD1;REV__nc|ENSG00000134539|Q13241-3|KLRD1 27.628801355627647 0.2527626205058048 2 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L} 9 -1 + 84.957 0 0 6.8318 6.8318 87.294 0 0 0 16.63303128443836 68.0462187404089 16.63303128443836 4.731975075880328 0 2.274227503252014 1.6989700043360187 0 1.6351518780601921 [YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYYH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}VY{[RE]|[WV]}Q;[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[RE]|[WV]}Q;[YN]A{[DS]|[MA]|[CV]|TT}VWR{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VW[YN]{I|L};[YN]A{[DS]|[MA]|[CV]|TT}V{NN|[MP]|[D{I|L}]|[EV]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[{M(Oxidation (M))|F}C]|[YS]}{[WN]|[YH]}VYYH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}V{[DA]|[EG]}R{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]A{[DS]|[MA]|[CV]|TT}V{[QV]|[N{I|L}]|[RA]|[KV]}D{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN][{I|L}V]C(Carbamidomethyl (C))Y{[RE]|[WV]}Q 6.8318;6.4512;5.2177;4.9608;4.4947;4.466;4.2515;4.2239;4.146;4.111 -;-;-;-;-;-;-;-;-;- 1804 NaN NaN 223336.8 NaN 11526 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14857 65.386 NaN 757380 35 0 107460 0.264 + 10153 IFRRSLCMRSM 11 98 467.241897757729 1398.703863873387 3 467.2333068847656 MULTI HCD FTMS 0 0 0 14852 78819.3359375 0.13082583518723018 7 -0.17003631591796875 5 Unmodified _IFRRSLCMRSM_ REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF 4.11662792887243 0.40086653484894175 2 {I|L}DD 3 -1 20.56 0 0 1.4699 0 0 525.2995906815827 527.2714977596571 1052.5710884412397 0 0 0 0 0 0.6747425010840047 0 0 0 {I|L}DD 1.4699 - 108 + NaN NaN 208471.7 NaN 11527 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14858 65.39 NaN 692450 35 0 104670 0.261 + 24559 RYLLTQELL 9 85 574.8372259548897 1147.6598989765794 2 574.8377075195312 MULTI HCD FTMS 0 0 0 14852 154653.4375 0.9911888935154558 1 -0.02626800537109375 6 Unmodified _RYLLTQELL_ ENSG00000103335|ENST00000301015|PIEZO1 51.487983226225225 0.029489205318603332 2 [YR]{I|L}{I|L}TQE{I|L}{I|L} 9 0 + 75.059 0 0 6.5402 6.5402 86.228 0 0 0 2.922152515121212 55.850935420268115 2.922152515121212 3.0546218740408904 0 2.4604093769761874 0 0.7302046884880937 0 + + [YR]{I|L}{I|L}TQE{I|L}{I|L};[Y{I|L}]R{I|L}TQE{I|L}{I|L};[YR]{I|L}{I|L}T[AG]E{I|L}{I|L};[Y{I|L}]R{I|L}T[AG]E{I|L}{I|L} 6.5402;6.274;5.7378;5.4717 +;-;-;- + 347 NaN NaN 198385.4 NaN 11528 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14859 65.393 NaN 266920 35 0 77649 0.264 -1 0 58 406.2042499890739 405.1969735224739 1 406.2166442871094 MULTI HCD FTMS 0 0 0 14852 5777.50732421875 0.16187860050663613 -10 0.2611846923828125 7 NaN NaN 2 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 5.175 0 0 77.05498851446454 0 77.05498851446454 0 20.969100130080562 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 5.175 - 3 + NaN NaN 125390.5 NaN 11529 3328 14852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14861 65.398 NaN 1562800 35 0 211540 0.327 + 32123 VYSFGFERL 9 113 559.2874934848479 1116.5604340364957 2 559.2694702148438 MULTI HCD FTMS 0 0 0 14860 98456.6171875 0.0828684766502512 16 -0.3988037109375 1 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 41.95555342248728 0.056367691549927025 2 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 9 5 59.623 0 0 5.3398 0 0 0 128.10960968670545 128.10960968670545 19.663836684791164 0 0 0 0 0.9247425010840047 1.6989700043360187 0.5387254899964358 1.5356668758921828 [YV]S[NG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}G 5.3398 - 4714 NaN NaN 336687.3 NaN 11530 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14862 65.403 NaN 1799400 35 0 788030 0.263 + 35878 YYRPRFFLL 9 51 425.57289013442517 1273.6968410034756 3 425.57305908203125 MULTI HCD FTMS 0 0 0 14860 298703.5625 0.21396494082636258 4 -0.08812713623046875 2 Unmodified _YYRPRFFLL_ ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 20.41453444215458 0.18397929046831515 2 YY 2 7 33.188 0 0 2.6056 0 0 0 944.548780979074 944.548780979074 2.2184874961635614 0 0 0 0 0 1.6989700043360187 0 0 + YY 2.6056 + + 13 + NaN NaN 359664.7 NaN 11531 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14863 65.406 NaN 346520 35 0 60031 0.261 + 5759 FPAGYMYPSM 10 63 590.2458846262415 1178.477216319283 2 590.246337890625 MULTI HCD FTMS 0 0 0 14860 115176.28125 0.4681986145636783 -3 0.0848541259765625 3 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 71.13359017698441 0.016242133362018647 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]MYPS{M(Oxidation (M))|F} 9 2 + 60.837 0 0 5.1623 5.1623 85.233 0 0 0 8.976949551052371 37.71529987308661 8.976949551052371 6.518637558036673 0 1.8494850021680094 1.5228787452803376 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]MYPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]M[VS]PS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}C]|[YS]}[TA]YPS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HD]{M(Oxidation (M))|F}[VS]PS{M(Oxidation (M))|F};[WY][VS]MYPS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[H{I|L}]M[VS]PCM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}C]|[YS]}[TA]YPCM;[WY]YM[VS]PS{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}Y[PA]{M(Oxidation (M))|F} 5.1623;4.6092;4.1169;4.0205;3.7987;3.7315;3.7121;3.6157;3.2964;2.8119 -;-;-;-;-;-;-;-;-;- 406 NaN NaN 142244.6 NaN 11532 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14864 65.409 NaN 277040 35 0 13080 0.261 + 11756 KDMQEYFDF 9 61 611.7574773502996 1221.5004017673991 2 611.7577514648438 MULTI HCD FTMS 0 0 0 14860 115793.8515625 0.4355837356509587 8 -0.18950653076171875 4 Unmodified _KDMQEYFDF_ REV__ENSG00000163161|ENST00000285398|ERCC3;REV__ENST00000426778.5_1_2:128015174-128051559:-|nuORF 22.736283301280096 0.1639198954644489 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 -1 + 58.594 0 0 4.7969 4.7969 85.873 0 0 0 3.768411687748099 48.13608784304506 3.768411687748099 9.164539485499255 0 2.274227503252014 0 0 0.4247425010840047 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[{I|L}T]C[DG]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[WQ]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}AA{M(Oxidation (M))|F}{[WT]|[RM]} 4.7969;4.0466;1.529;1.4791;0.073128 -;-;-;-;- 286 NaN NaN 140692.9 NaN 11533 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14865 65.413 NaN 228840 35 0 59574 0.264 + 25033 RYYLKFNFL 9 44 421.9009688208532 1262.6810770627596 3 421.9010925292969 MULTI HCD FTMS 0 0 0 14860 44216.16015625 0.30229512590528274 4 -0.08812713623046875 5 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.0567 0 0 984.5178637245194 0 984.5178637245194 0 6.505149978319906 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.0567 + + 12 NaN NaN 129166 NaN 11534 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14866 65.416 NaN 341530 35 0 44001 0.261 + 20566 PEELREII 8 56 499.7793929430859 997.5442329529718 2 499.7798767089844 MULTI HCD FTMS 0 0 0 14860 59988.00390625 0.19951872332787285 -5 0.1272430419921875 6 Unmodified _PEELREII_ ENSG00000072415|ENST00000261681|PALS1;nc|ENSG00000072415|Q8N3R9-2|PALS1 18.1463463914782 0.46027927471454505 2 D{I|L}RE{I|L}{I|L} 6 3 39.385 0 0 3.9482 0 0 240.1078816144547 0 240.1078816144547 0 23.90092514408778 0 0 0 0.8494850021680094 0 0 0 D{I|L}RE{I|L}{I|L} 3.9482 - 121 NaN NaN 143007.8 NaN 11535 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14867 65.419 NaN 190540 35 0 13488 0.261 -1 SYMESVVTF 9 55 539.7424245517936 NaN 0 539.7412109375 PEAK HCD FTMS 0 0 0 14860 7620.34619140625 0.16847180264463635 -5 0.1272430419921875 7 Oxidation (M) _SYM(Oxidation (M))ESVVTF_ ENSG00000141376|ENST00000407086|BCAS3;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000593004.5_1_17:58756818-58797523:+|nuORF;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3 20.453626601364224 0.18435338882370536 2 TPT 3 -1 22.792 0 0 2.1153 0 0 613.2445098928466 162.05576502017814 775.3002749130247 0 0 0 0 0 0.9247425010840047 0 0.2742275032520141 0 TPT 2.1153 - 66 + NaN NaN 113322.1 NaN 11536 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14868 65.423 NaN 162980 35 0 6260.8 0.261 + 32554 WIFTRESI 8 64 526.282157040983 1050.5497611487658 2 526.2820434570312 MULTI HCD FTMS 0 0 0 14860 28558.458984375 0.34904624132572315 9 -0.20902252197265625 8 Unmodified _WIFTRESI_ ENST00000448644.2_1_6:133055390-133055831:-|nuORF 7.289230182591677 0.5311777711368266 2 W{[TV]|[{I|L}S]} 3 5 20.458 0 0 1.9473 0 0 646.3414848607032 0 646.3414848607032 0 11.416506143517747 0 0 0 1 0 0 0 W{[TV]|[{I|L}S]} 1.9473 - 113 NaN NaN 113734 NaN 11537 3329 14860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14870 65.428 NaN 645460 35 0 55793 0.327 + 2918 DYSPYFKTI 9 89 567.2792195549672 1132.5438861767343 2 567.2792358398438 MULTI HCD FTMS 0 0 0 14869 306116.5625 0.01455920999751256 92 -2.4603424072265625 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 74.19965305603844 0.007729275404663812 2 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 69.068 0 0 6.0985 6.0985 90.102 0 0 0 15.612431371158735 11.840905095085205 11.840905095085205 11.840905095085205 0 2.06295299324845 2 1.0356668758921828 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EK{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}T][TP]EK{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VV[YK];[RH]E[C(Carbamidomethyl (C))K]EK{M(Oxidation (M))|F};[RH]E[C(Carbamidomethyl (C))K][VS]A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}RR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6.0985;5.053;4.72;3.6745;3.4903;3.0954;2.4953;1.693;1.5137;1.4044 +;-;-;-;-;-;-;-;-;- + 708 NaN NaN 184446 NaN 11538 3330 14869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14871 65.432 NaN 978140 35 0 276800 0.262 + 23195 RFLNDPGHLLW 11 78 456.57865725541933 1366.714142366458 3 456.5787353515625 MULTI HCD FTMS 0 0 0 14869 395390.15625 0.11185497199100441 10 -0.23172760009765625 2 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 48.56086444690353 0.08732795581181207 2 {I|L}ND[YQ]{I|L}{I|L}W 8 5 72.696 0 0 5.319 0 0 303.1692066876969 0 303.1692066876969 0 65.70615965204567 0 0 0 2.1307196863200843 0 0.2742275032520141 0.75 {I|L}ND[YQ]{I|L}{I|L}W 5.319 - 167 NaN NaN 235790.5 NaN 11539 3330 14869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14872 65.436 NaN 134680 35 0 28904 0.261 + 34064 YNILDQIL 8 41 496.2764561845071 990.5383594358142 2 496.27691650390625 MULTI HCD FTMS 0 0 0 14869 75628.4765625 0.246978983769022 5 -0.1141815185546875 3 Unmodified _YNILDQIL_ REV__ENSG00000140650|ENST00000268261|PMM2;REV__ENST00000562448.1_1_16:8895761-8900277:+|nuORF;REV__ENST00000564030.5_1_16:8891706-8900277:+|nuORF;REV__nc|ENSG00000140650|O15305-2|PMM2 14.838274106304384 0.4846187982323419 2 Q{I|L}{I|L} 3 -1 40.445 0 0 4.0832 0 0 618.303026267775 0 618.303026267775 0 40.44531259372398 0 0 0 1 0 0 0.4247425010840047 Q{I|L}{I|L} 4.0832 + + 20 NaN NaN 105702.7 NaN 11540 3330 14869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14873 65.439 NaN 154070 35 0 9295.5 0.261 + 25030 RYYLKFNFL 9 45 632.3474894696266 1262.680426006053 2 632.3493041992188 MULTI HCD FTMS 0 0 0 14869 42730.6875 0.2636434230714169 5 -0.1141815185546875 4 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F}K 2 8 9.464 0 0 0.74951 0 0 392.20491438671553 592.2892035439506 984.4941179306661 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}K 0.74951 - 14 + NaN NaN 116304.1 NaN 11541 3330 14869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14875 65.444 NaN 2657000 35 0 411330 0.327 + 5197 FFDAELSQM 9 91 552.2391290246032 1102.4637051160064 2 552.2396240234375 MULTI HCD FTMS 0 0 0 14874 1433584.75 0.3981953111003401 15 -0.375762939453125 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 185.05004568166646 7.3094861853412E-13 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 97.842 2.8432 0.96661 8.8748 8.8748 68.576 0 0 0 0 59.143680854516575 0 0 0 3.1989700043360187 0 1.7614393726401687 0.9802046884880937 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.8748 + + 2624 + NaN NaN 491053.7 NaN 11542 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14876 65.448 NaN 2177000 35 0 607320 0.261 + 13272 KYMDINFDF 9 97 604.7681072670384 1207.5216616008768 2 604.7686157226562 MULTI HCD FTMS 0 0 0 14874 1045863.75 0.305321764140177 11 -0.26457977294921875 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 96.93554129104106 0.004344229100022454 2 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 74.351 0 0 6.1573 0 0 438.19316012802483 0 438.19316012802483 0 33.56081445578815 0 0 0 1.8494850021680094 0 0.9124379954164592 1.1861818737241734 + D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.1573 + + 2870 NaN NaN 426539.8 NaN 11543 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14877 65.452 NaN 511750 35 0 118470 0.261 + 7177 FSKYGGQRSQG 11 66 607.7989691297005 NaN 0 607.8180541992188 PEAK HCD FTMS 0 0 0 14874 17869.7578125 0.31465588929227467 8 -0.1860809326171875 3 Unmodified _FSKYGGQRSQG_ ENST00000469358.5_1_6:30887456-30890206:+|nuORF 20.580933911654288 0.2519942933214944 2 NQE{I|L} 4 10 28.708 0 0 2.3655 0 0 525.2488649178009 201.06694971256096 726.3158146303618 0 0 0 0 0 0.3494850021680094 0 0.75 0 NQE{I|L} 2.3655 - 246 + NaN NaN 174317.5 NaN 11544 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14878 65.455 NaN 705090 35 0 37883 0.261 + 34953 YSNNPKPSTAY 11 91 621.2944283317681 NaN 0 621.275146484375 PEAK HCD FTMS 0 0 0 14874 19558.392578125 1 0 0 4 Unmodified _YSNNPKPSTAY_ REV__ENSG00000138439|ENST00000392238|FAM117B 11.494710602746466 0.3095129597915146 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 6 -1 37.409 0 0 3.0155 0 0 64.03793705960227 309.0908371899829 373.12877424958515 0 0 0 0 0 0 0 0 0.3252574989159953 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 3.0155 - 632 + NaN NaN 195685.7 NaN 11545 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14879 65.458 NaN 553340 35 0 56127 0.261 + 35579 YYIFFLFF 8 62 580.2954106467184 NaN 0 580.3113403320312 PEAK HCD FTMS 0 0 0 14874 11462.0078125 0.23904579613187676 4 -0.097991943359375 5 Unmodified _YYIFFLFF_ ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13 32.45364647766026 0.3770926224456901 2 N{I|L}S 3 7 21.682 0 0 1.8715 0 0 212.07498309050214 629.3409364113991 841.4159195019013 0 0 0 0 0 0.3494850021680094 0 0.3494850021680094 0 N{I|L}S 1.8715 - 28 + NaN NaN 170228.6 NaN 11546 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14880 65.462 NaN 486370 35 0 60300 0.261 + 11975 KFRQDQPGFP 10 82 610.3129683410682 NaN 0 610.2921752929688 PEAK HCD FTMS 0 0 0 14874 32783.13671875 0.11183627418799971 -10 0.2737579345703125 6 Unmodified _KFRQDQPGFP_ REV__ENST00000531489.1_1_11:34357135-34357432:-|nuORF 3.5964929083625545 0.337106189561315 2 P 1 -1 6.9897 0 0 0.57358 0 0 705.352878635938 413.1831038375469 1118.535982473485 0 0 0 0 0 0 0 0 0 P 0.57358 + + 91 + NaN NaN 163453.5 NaN 11547 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14881 65.465 NaN 377900 35 0 18702 0.261 + 31809 VYMDWYEKF 9 61 648.7838371335808 1295.5531213339616 2 648.7832641601562 MULTI HCD FTMS 0 0 0 14874 61683.68359375 0.027406036118336533 75 -1.9818267822265625 7 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 69.33821966488729 0.009302356455414924 2 VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 99.659 0 0 7.6924 7.6924 92.733 0 0 0 57.80130979747199 10.642492736872597 10.642492736872597 11.104159301997 0 2.853917193908117 2 0.3494850021680094 0 + + VY{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};VY{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[QT]K{M(Oxidation (M))|F};V{[HG]|PP}EYWD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}E{[VA]|[{I|L}G]}N{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY[QT]{I|L}CD{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}E{[VA]|[{I|L}G]}GG{M(Oxidation (M))|F}P{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[W{I|L}]DDK{M(Oxidation (M))|F} 7.6924;6.8353;5.3192;4.8165;4.5994;4.3932;3.892;2.9974 +;+;-;-;-;-;-;- + 573 + NaN NaN 144255.2 NaN 11548 3331 14874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14883 65.47 NaN 1668200 35 0 153790 0.327 + 18128 MPDFDLHL 8 95 502.2308257089257 1002.4470984846514 2 502.2315368652344 MULTI HCD FTMS 0 0 0 14882 1036501.375 0.9373220410216887 -6 0.15676116943359375 1 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 137.58523961978855 0.05160782114563498 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 65.096 0 0 6.4938 6.4938 85.397 0 0 0 1.3698426097616903 1.3698426097616903 1.3698426097616903 1.3698426097616903 0 2.1549471895720984 0 1.8243923658886185 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L};{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;[H{I|L}]{I|L}Y[EC]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};[H{I|L}]{I|L}D{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ];[H{I|L}]D{I|L}{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}V]{I|L} 6.4938;6.3571;4.5108;3.3319;2.3526;1.3789;1.3283;1.1364;0.64382 +;+;-;-;-;-;-;-;- + 413 NaN NaN 341953.2 NaN 11549 3332 14882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14884 65.474 NaN 917320 35 0 83162 0.261 + 9821 HYNWLIYHL 9 83 629.82190727017 1257.6292616071398 2 629.822021484375 MULTI HCD FTMS 0 0 0 14882 585134.1875 0.3364656153856604 12 -0.29738616943359375 2 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 114.6490535036381 0.0021834323520089267 2 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 104.47 0 0 8.3071 8.3071 91.075 0 0 0 8.106121657239953 7.7815125038364386 7.7815125038364386 7.7815125038364386 0 2.774227503252014 1.5228787452803376 0 1.086696871556164 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}Y{I|L}H;HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}GGW{I|L}{I|L}Y{I|L}H;{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{I|L}YHYH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}{I|L}H 8.3071;7.6884;7.6626;7.5749;7.2274;6.9562;6.7745;6.6875;6.6304;6.6087 +;-;+;-;-;-;-;-;-;- + 794 NaN NaN 228237.1 NaN 11550 3332 14882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14885 65.478 NaN 1073000 35 0 113750 0.263 + 30652 VPDPKELLL 9 82 512.3078278674773 1022.6011028017546 2 512.30810546875 MULTI HCD FTMS 0 0 0 14882 561650.6875 0.9618595085728524 7 -0.15995025634765625 3 Unmodified _VPDPKELLL_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-3|TACC2 57.24910588100465 0.021429789259086996 2 [VP]DPK{I|L}E{I|L}{I|L} 9 2 + 46.473 0 0 4.5445 4.5445 61.645 0 0 0 0.657205584423366 2.7239953007803877 0.657205584423366 0 0 1.4291746928241125 1.3979400086720375 0.6139829889124311 0 [VP]DPK{I|L}E{I|L}{I|L};[VP]DPKE{I|L}{I|L}{I|L};[DP]VPKE{I|L}{I|L}{I|L};[DP]VPK{I|L}E{I|L}{I|L} 4.5445;4.5445;4.4803;4.4803 -;+;-;- + 256 NaN NaN 255593.8 NaN 11551 3332 14882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14886 65.481 NaN 148260 35 0 21886 0.261 -1 ELICTLMPIF 10 43 626.818874983544 1251.623197033888 2 627.2977294921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _ELIC(Carbamidomethyl (C))TLM(Oxidation (M))PIF_ CNOT1|p.S504C|1|0.1|ENSG00000125107|chr16:58578772-58578772|G/C|missense_variant 9.38312468134398 0.42334543440173333 2 N{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 1.9729 0 0 859.4130726544937 0 859.4130726544937 0 17.703037561203843 0 0 0 0 0 0 0 N{I|L}{M(Oxidation (M))|F} 1.9729 - 12 NaN NaN 110141.1 NaN 11552 3332 14882 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14888 65.486 NaN 826490 35 0 108560 0.327 + 4991 FAYIKYDNEL 10 81 638.3163942701558 1274.6182356071115 2 638.316650390625 MULTI HCD FTMS 0 0 0 14887 622537.1875 0.6609808675386536 1 -0.036163330078125 1 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 32.78568957990786 0.20801173326193015 2 {[MS]|[{M(Oxidation (M))|F}A]}YDGKDY{I|L}A{I|L} 11 6 + 87.56 0 0 6.8695 6.8695 90.961 0 0 0 5.862435673934272 40.725903037542054 5.862435673934272 9.827796776480469 0 2.610924374808178 0 0.9749073637206092 0 {[MS]|[{M(Oxidation (M))|F}A]}YDGKDY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}YA{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKDYA{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A{[CA]|SS}A{M(Oxidation (M))|F}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}{M(Oxidation (M))|F}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}AY{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YDGKD{I|L}S{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YT[QA]DY{I|L}A{I|L};{[MS]|[{M(Oxidation (M))|F}A]}YD{I|L}A[QT]YA{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}AKGDY{M(Oxidation (M))|F}A{I|L} 6.8695;6.0985;5.8764;5.1751;5.0983;5.0073;4.9313;4.8425;4.7945;4.5373 -;-;-;-;-;-;-;-;-;- 5996 NaN NaN 217677.8 NaN 11553 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14889 65.491 NaN 704460 35 0 73366 0.261 + 13892 KYQELQVLF 9 73 584.323897458298 1166.633241983396 2 584.32421875 MULTI HCD FTMS 0 0 0 14887 342070.125 0.5304010519790167 1 -0.036163330078125 2 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 45.739877483867886 0.03899552410870734 2 [YQ]KE{I|L}QV{I|L}{M(Oxidation (M))|F} 9 2 + 73.682 0 0 6.3158 6.3158 89.068 0 0 0 2.632192780232785 27.0217596488785 2.632192780232785 9.208187539523749 0 2.7302046884880937 0 0 0.3807196863200844 [YQ]KE{I|L}QV{I|L}{M(Oxidation (M))|F};[YQ]KE{I|L}[AG]V{I|L}{M(Oxidation (M))|F};[{I|L}V]KQEE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[{I|L}V]QKEE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[{I|L}V]K[AG]EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[{I|L}V][AG]KEE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}][KT]{I|L}E{[WS]|[C(Carbamidomethyl (C)){I|L}]}K;[{I|L}V]KQEE{M(Oxidation (M))|F}{M(Oxidation (M))|F}K;[{I|L}V]QKEE{M(Oxidation (M))|F}{M(Oxidation (M))|F}K;[K{I|L}]VQEE{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 6.3158;5.5265;4.2935;4.1425;3.5042;3.3532;3.0039;2.9361;2.7851;2.389 -;-;-;-;-;-;-;-;-;- 614 NaN NaN 206265.7 NaN 11554 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14890 65.494 NaN 730070 35 0 118520 0.261 + 31579 VYIEAAIRF 9 77 541.3057795550911 1080.5970061769822 2 541.3060302734375 MULTI HCD FTMS 0 0 0 14887 167525.421875 0.20270374458001014 -4 0.08812713623046875 3 Unmodified _VYIEAAIRF_ ENSG00000204178|ENST00000374343|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1 72.96794272382148 0.008127836904478181 2 [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F} 9 0 + 103.59 0 0 9.5867 9.5867 94.778 0 0 0 9.348331157524967 81.90155260184159 9.348331157524967 9.771212547196626 0 3.5 1.6989700043360187 0 0 + + [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}EAAR{I|L}{M(Oxidation (M))|F};[YV]{I|L}AAE{I|L}R{M(Oxidation (M))|F};[YV][DV]VA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}AAER{I|L}{M(Oxidation (M))|F};[YV]{I|L}[RD]{I|L}[VG]{M(Oxidation (M))|F};[YV]{I|L}E[RV][VG]{M(Oxidation (M))|F};[YV][DV]VAR{I|L}{M(Oxidation (M))|F};[YV][RV]E{I|L}[VG]{M(Oxidation (M))|F};[YV]{I|L}[RD][VG]{I|L}{M(Oxidation (M))|F} 9.5867;8.6825;7.3203;6.7631;6.416;6.3052;6.0266;5.8589;5.4009;5.4009 +;-;-;-;-;-;-;-;-;- + 738 NaN NaN 199271 NaN 11555 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14891 65.498 NaN 959580 35 0 92097 0.261 + 13236 KYMDIEFDF 9 87 612.2680462198797 1222.5215395065593 2 612.2691040039062 MULTI HCD FTMS 0 0 0 14887 208165.890625 0.09645960972404533 -8 0.199188232421875 4 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 80.6760300276096 0.005633624786464751 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 73.813 0 0 6.0378 6.0378 85.009 0 0 0 2.2885593051641706 9.035984316004217 2.2885593051641706 2.2885593051641706 0 2.579689690656103 0 0.9634679910804405 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[PA]KD{[SA]|[TG]}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[YV]D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{[ET]|[MV]}S[YV]D{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[PA]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}C(Carbamidomethyl (C))K 6.0378;5.8506;2.7061;2.3806;1.3987;0.089359 +;-;-;-;-;- + 2480 NaN NaN 246425.1 NaN 11556 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14892 65.501 NaN 503460 35 0 34537 0.261 -1 IMYYCRIE 8 89 574.2672043013438 1146.5198556694875 2 574.2677001953125 MULTI HCD FTMS 0 0 0 14887 115011.890625 0.20422147060214024 -3 0.05854034423828125 5 Carbamidomethyl (C) _IMYYC(Carbamidomethyl (C))RIE_ sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1 16.942295170755138 0.46913822049235215 2 {I|L}MAH{I|L}{I|L}D{I|L} 8 -1 52.649 0 0 4.5921 0 0 0 237.0001162164672 237.0001162164672 28.335558520059923 0 0 0 0 1.5189301784845295 1.5228787452803376 0.7887254899964358 0 {I|L}MAH{I|L}{I|L}D{I|L} 4.5921 - 170 + NaN NaN 165808 NaN 11557 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14893 65.504 NaN 423560 35 0 90024 0.262 -1 RMCLSRRFIMA 11 74 467.241897757729 1398.703863873387 3 467.2419738769531 MULTI HCD FTMS 0 0 0 14887 54889.578125 0.09110676734160787 12 -0.31067657470703125 6 Oxidation (M) _RMCLSRRFIM(Oxidation (M))A_ ENST00000547505.2_1_12:44054435-44054633:+|nuORF 2.6312355333042263 0.4073809613003177 2 V[WR]{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 9.2204 0 0 0.65921 0 0 721.3553333966812 0 721.3553333966812 0 -0.3836439183553626 -0.3836439183553626 0 0 0.4247425010840047 0 0 0 V[WR]{[MS]|[{M(Oxidation (M))|F}A]} 0.65921 - 71 NaN NaN 168961 NaN 11558 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14894 65.508 NaN 82901 35 0 7750.7 0.261 -1 0 39 420.3189451456905 NaN 0 420.2171936035156 PEAK HCD FTMS 0 0 0 14887 20785.31640625 0.6588126877852414 4 -0.10137939453125 7 NaN NaN 2 {I|L} 1 -1 4.6041 0 0 0.54901 0 0 294.3207307663085 428.19394861392817 722.5146793802367 0 0 0 0 0 0 0 0 0 {I|L} 0.54901 - 3 + NaN NaN 104042.9 NaN 11559 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14895 65.511 NaN 209550 35 0 18833 0.261 + 2122 DFNEFLLF 8 50 522.756096489128 NaN 0 522.7554931640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _DFNEFLLF_ ENSG00000159450|ENST00000614923|TCHH;TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant 13.50788311687929 0.38822285293237185 2 {M(Oxidation (M))|F}D{I|L}N 4 6 19.285 0 0 1.8481 0 0 292.2182343827497 259.0717867486938 551.2900211314435 0 0 0 0 0 0 0 0 0.4247425010840047 {M(Oxidation (M))|F}D{I|L}N 1.8481 - 58 + NaN NaN 120726.6 NaN 11560 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14896 65.514 NaN 136270 35 0 19870 0.262 + 33331 YFWGWLNAVF 10 48 434.88225543735075 NaN 0 434.8821716308594 PEAK HCD FTMS 0 0 0 14887 49407.09375 0.4265380653429779 65 -1.7033157348632812 9 Unmodified _YFWGWLNAVF_ ENSG00000125375|ENST00000557421|DMAC2L;ENST00000554438.5_1_14:50779073-50792438:+|nuORF;ENST00000555939.5_1_14:50779073-50791268:+|nuORF;ENST00000557421.5_1_14:50779073-50792346:+|nuORF;nc|ENSG00000125375|Q99766-2|DMAC2L;nc|ENSG00000125375|Q99766-3|DMAC2L 2.0860074813731053 0.33839895573887124 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113734.4 NaN 11561 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14897 65.517 NaN 50803 35 0 8074.7 0.261 -1 RPDLFGCV 8 29 482.23846435546875 NaN 0 482.23846435546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _RPDLFGC(Carbamidomethyl (C))V_ ENSG00000085377|ENST00000652536|PREP 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96885.1 NaN 11562 3333 14887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14899 65.522 NaN 1628700 35 0 106850 0.327 + 32252 VYTVVDEMF 9 113 559.7571368692385 1117.4997208052769 2 559.7573852539062 MULTI HCD FTMS 0 0 0 14898 433545.1875 0.7932162607479264 2 -0.03564453125 1 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 139.54400939418784 2.61670173137287E-05 2 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 73.659 0 0 6.5914 6.5914 88.655 0 0 0 18.40288749933073 14.09256854528806 14.09256854528806 9.062959475437737 0 2.524227503252014 1.5228787452803376 1.7658715643802765 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]S{I|L}[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]T{I|L}[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};VVTY[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};VVTV{[YD]|[{M(Oxidation (M))|F}M]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F};NSEEDQQ[R{I|L}];VV{M(Oxidation (M))|F}V{[YD]|[{M(Oxidation (M))|F}M]}{[ET]|[MV]}{M(Oxidation (M))|F} 6.5914;5.7804;3.969;3.5378;2.7092;0.33262;0.21504 +;-;-;-;-;-;- + 3347 NaN NaN 332965.5 NaN 11563 3334 14898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14900 65.527 NaN 391420 35 0 23899 0.261 + 11465 IYQFIMDRF 9 68 624.807632095184 1247.6007112571679 2 624.8071899414062 MULTI HCD FTMS 0 0 0 14898 124275.8203125 0.3796878871216978 13 -0.316650390625 2 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 64.9267550582149 0.010729834900650251 2 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 105.77 0 0 8.4781 8.4781 92.734 0 0 0 82.06128941425659 9.889917747712644 9.889917747712644 9.208187539523749 0 2.943672679568534 2 0.4247425010840047 0.3494850021680094 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}YQ{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]WP{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]WP{M(Oxidation (M))|F};{I|L}YQ{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T][QA][KC];[YV]AA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F} 8.4781;7.74;6.9032;6.1651;6.0709;5.349;5.0527;4.605;4.3253;3.9858 +;-;+;-;-;-;-;-;-;- + 639 + NaN NaN 148496.1 NaN 11564 3334 14898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14901 65.53 NaN 1034100 35 0 187720 0.262 + 16378 LSFELCSEI 9 71 520.7521033742361 1039.489653815272 2 520.7523803710938 MULTI HCD FTMS 0 0 0 14898 76271.8671875 1 0 0 3 Unmodified _LSFELCSEI_ REV__ENST00000503693.1_1_4:1283701-1322488:+|nuORF;REV__nc|ENSG00000090316|Q7L5Y9-2|MAEA;REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA 14.838274106304384 0.23215694253501695 2 {I|L}{M(Oxidation (M))|F}S 3 -1 28.672 0 0 2.7583 0 0 0 689.2966039322315 689.2966039322315 10 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}S 2.7583 - 55 + NaN NaN 246279.7 NaN 11565 3334 14898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14902 65.534 NaN 250230 35 0 22477 0.261 + 6731 FPQEELPVKL 10 54 600.337503358195 1198.66045378319 2 600.3367309570312 MULTI HCD FTMS 0 0 0 14898 27038.51171875 0.48320631864119784 5 -0.10756683349609375 4 Unmodified _FPQEELPVKL_ ENSG00000163611|ENST00000295872|SPICE1;ENST00000496105.1_1_3:113169108-113212968:-|nuORF 7.101721422024254 0.4377131641736035 2 {I|L}G[K{I|L}] 4 7 19.693 0 0 1.6429 0 0 769.3775170437686 0 769.3775170437686 0 10.228787452803374 0 0 0 0.3494850021680094 0 0 0 {I|L}G[K{I|L}] 1.6429 - 24 NaN NaN 138652.7 NaN 11566 3334 14898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14903 65.537 NaN 243340 35 0 30549 0.261 + 14193 LANMFRFY 8 58 531.2650066877001 NaN 0 531.264404296875 PEAK HCD FTMS 0 0 0 14898 25637.5859375 0.31913519087752545 4 -0.0847320556640625 5 Unmodified _LANMFRFY_ ENSG00000153406|ENST00000283429|NMRAL1 5.230669730166228 0.38822285293237185 2 A{I|L}{I|L}{M(Oxidation (M))|F} 4 6 20.433 0 0 1.9267 0 0 131.98667775600114 481.22956262760005 613.2162403836012 0 0 0 0 0 0 0 0 0 A{I|L}{I|L}{M(Oxidation (M))|F} 1.9267 - 20 + NaN NaN 133508.1 NaN 11567 3334 14898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14905 65.542 NaN 1274900 35 0 89982 0.327 + 6575 FPLDLDVKM 9 107 547.2840734785718 1092.5535940239436 2 547.2840576171875 MULTI HCD FTMS 0 0 0 14904 347119.4375 0.4591849246032563 1 -0.01616668701171875 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 121.5340881639634 0.001118397630175091 2 {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F} 9 0 + 104.39 0 0 9.5546 9.5546 91.609 0 0 0 75.40418433332746 14.973024840566467 14.973024840566467 5.8496219575940955 0 2.853917193908117 0 0.6109243748081782 0.23965182871044374 + + {M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVK{M(Oxidation (M))|F};[{I|L}P]D{I|L}D{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}SGVV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}SV[VG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDD{I|L}{I|L}VK{M(Oxidation (M))|F} 9.5546;9.0192;7.237;7.1238;6.181;5.7691;5.587;5.5323;5.2904;5.1458 +;+;-;-;-;-;-;-;-;- + 1892 + NaN NaN 282751.4 NaN 11568 3335 14904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14906 65.546 NaN 1210900 35 0 97618 0.261 + 32124 VYSFGFERL 9 109 559.2874934848479 1116.5604340364957 2 559.2692260742188 MULTI HCD FTMS 0 0 0 14904 81221.828125 0.06836238497458562 22 -0.5684432983398438 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 29.84058131909904 0.11198220037953927 2 [YV]S{M(Oxidation (M))|F}GTVTP 9 4 51.442 0 0 4.6072 0 0 0 162.0559023492797 162.0559023492797 18.8756275483518 0 0 0 0 0.5484550065040282 1.5228787452803376 1.2302046884880937 0 [YV]S{M(Oxidation (M))|F}GTVTP 4.6072 - 3989 + NaN NaN 274770.8 NaN 11569 3335 14904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14907 65.55 NaN 271960 35 0 34119 0.261 + 9102 HPFHILIAL 9 70 530.8186649865431 1059.6227770398862 2 530.8189697265625 MULTI HCD FTMS 0 0 0 14904 27626.943359375 0.0615800644734143 15 -0.38555145263671875 3 Unmodified _HPFHILIAL_ ENSG00000116747|ENST00000400968|RO60;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-4|RO60;nc|ENSG00000116747|P10155-5|RO60 28.173230860318316 0.11963627304438548 2 {I|L}A{I|L} 3 6 34.693 0 0 3.2741 0 0 744.4060973433974 0 744.4060973433974 0 19.20818753952375 0 0 0 0.8494850021680094 0 0 0 + {I|L}A{I|L} 3.2741 + + 94 NaN NaN 128035.5 NaN 11570 3335 14904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14908 65.553 NaN 84629 35 0 4337.1 0.261 -1 HPFPIDIDYM 10 38 632.2903973279698 NaN 0 632.2899780273438 PEAK HCD FTMS 0 0 0 14904 22840.013671875 0.6519325469467105 -3 0.07186126708984375 4 Oxidation (M) _HPFPIDIDYM(Oxidation (M))_ ENSG00000151461|ENST00000357604|UPF2 3.2813086475875832 0.33737594360511275 2 YD 2 -1 10.969 0 0 0.86879 0 0 165.0457772740786 816.4013765924436 981.4471538665223 0 0 0 0 0 0 0 0 0 YD 0.86879 - 5 + NaN NaN 102414.8 NaN 11571 3335 14904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14910 65.558 NaN 1369100 35 0 77984 0.327 + 29105 TYGEIFEKF 9 110 567.2792195549672 1132.5438861767343 2 567.2791748046875 MULTI HCD FTMS 0 0 0 14909 372890.875 0.01773506311106968 98 -2.64385986328125 1 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 72.96794272382148 0.008127836904478181 2 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 7 7 63.867 0 0 5.6393 0 0 0 229.1193026178344 229.1193026178344 25.945791523684576 0 0 0 0 1.586696871556164 1.3979400086720375 0.7302046884880937 0 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 5.6393 - 1596 + NaN NaN 304990.7 NaN 11572 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14911 65.562 NaN 829640 35 0 230130 0.261 + 14083 KYWDVPPPGF 10 52 603.3026020785045 1204.590651223809 2 603.3034057617188 MULTI HCD FTMS 0 0 0 14909 354660.1875 0.7839587342077138 11 -0.281005859375 2 Unmodified _KYWDVPPPGF_ ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 41.95555342248728 0.12843670176738353 2 [YV]GPP 5 6 57.218 0 0 4.75 0 0 0 688.3099730114182 688.3099730114182 31.878625004505704 0 0 0 0 1.5 2 0 0 [YV]GPP 4.75 - 185 + NaN NaN 219845.8 NaN 11573 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14912 65.566 NaN 778860 35 0 218250 0.264 + 23196 RFLNDPGHLLW 11 75 456.57865725541933 1366.714142366458 3 456.5788879394531 MULTI HCD FTMS 0 0 0 14909 367183.8125 0.10387546177747746 16 -0.4215545654296875 3 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 39.922945255915025 0.13744631790999062 2 {I|L}W 2 9 29.776 0 0 2.1787 0 0 1049.5391115946531 0 1049.5391115946531 0 17.609309280316907 0 0 0 0.8807196863200843 0 0 0 + {I|L}W 2.1787 + + 115 NaN NaN 219569.5 NaN 11574 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14913 65.569 NaN 376710 35 0 68703 0.261 + 19477 NPVSQVEIL 9 64 499.7793929430859 997.5442329529718 2 499.7794494628906 MULTI HCD FTMS 0 0 0 14909 258103.84375 0.8584474567864638 2 -0.0490875244140625 4 Unmodified _NPVSQVEIL_ ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|2|fusion;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|4|fusion;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6 24.990960013464015 0.14443998892849796 2 E{I|L}{I|L} 3 6 37.307 0 0 3.7399 0 0 624.3222238119506 0 624.3222238119506 0 20.31743128760553 0 0 0 0.8807196863200843 0 0.3807196863200844 0 + E{I|L}{I|L} 3.7399 + + 63 NaN NaN 155144.1 NaN 11575 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14914 65.573 NaN 525560 35 0 80580 0.261 + 29587 VADPYVVIM 9 63 511.76491871505846 1021.5152844969169 2 511.7651062011719 MULTI HCD FTMS 0 0 0 14909 256497.328125 0.7328753558719259 16 -0.4215545654296875 5 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 42.09456458481378 0.05572955244001856 2 VV{I|L}{M(Oxidation (M))|F} 4 5 47.735 0 0 4.673 0 0 545.2501698224625 0 545.2501698224625 0 36.28144697160131 0 0 0 1.7302046884880937 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.673 + + 120 NaN NaN 179585.4 NaN 11576 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14915 65.576 NaN 517460 35 0 87630 0.261 + 5760 FPAGYMYPSM 10 70 590.2458846262415 1178.477216319283 2 590.2462158203125 MULTI HCD FTMS 0 0 0 14909 173307.140625 0.7045041066961655 4 -0.10137939453125 6 Oxidation (M) _FPAGYMYPSM(Oxidation (M))_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 2 {[WN]|[YH]}[DP]M[VS]PS 9 8 44.063 0 0 3.739 0 0 0 162.02998938130102 162.02998938130102 30.391362274856917 0 0 0 0 1.6989700043360187 1.6989700043360187 0.5994850021680094 0.3252574989159953 {[WN]|[YH]}[DP]M[VS]PS 3.739 - 296 NaN NaN 169577 NaN 11577 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14916 65.579 NaN 429030 35 0 73012 0.261 + 15813 LPHYEPIPF 9 76 556.7920346006468 1111.5695162680936 2 556.792236328125 MULTI HCD FTMS 0 0 0 14909 130939.765625 1 0 0 7 Unmodified _LPHYEPIPF_ ENSG00000109180|ENST00000264312|OCIAD1;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1 16.942295170755138 0.21397866736869717 2 {I|L}{I|L}P{M(Oxidation (M))|F} 4 5 35.974 0 0 3.2363 0 0 623.2710066018811 0 623.2710066018811 0 21.53720958383822 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}P{M(Oxidation (M))|F} 3.2363 - 296 + NaN NaN 156369.4 NaN 11578 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14917 65.583 NaN 218440 35 0 21595 0.261 + 26458 STSAPDEPLL 10 66 515.2584746082726 1028.5023962833452 2 515.259033203125 MULTI HCD FTMS 0 0 0 14909 65861.140625 0.6634002751581514 2 -0.0490875244140625 8 Unmodified _STSAPDEPLL_ ENSG00000184304|ENST00000331968|PRKD1;ENST00000468370.5_1_14:30107689-30135322:-|nuORF 9.38312468134398 0.42334543440173333 2 P{I|L}{I|L} 3 7 30.005 0 0 2.9174 0 0 687.2710438459 0 687.2710438459 0 14.520534381044499 0 0 0 0.3807196863200844 0 0 0 + P{I|L}{I|L} 2.9174 + + 24 NaN NaN 125971 NaN 11579 3336 14909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14919 65.588 NaN 2552800 35 0 377710 0.327 + 5198 FFDAELSQM 9 100 552.2391290246032 1102.4637051160064 2 552.239501953125 MULTI HCD FTMS 0 0 0 14918 1147392.5 0.3187019905810919 21 -0.548858642578125 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 95.613 2.2185 0.75423 8.6727 8.6727 68.34 0 0 0 0 56.96324965925532 0 0 0 3.1747425010840047 0 1.7051120522087029 0.7614393726401688 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.6727 + + 2200 + NaN NaN 494631.9 NaN 11580 3337 14918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14920 65.592 NaN 1431100 35 0 96172 0.261 + 4616 EYLTYSLKL 9 105 565.3105556728879 1128.6065584125756 2 565.3107299804688 MULTI HCD FTMS 0 0 0 14918 835573.4375 1 0 0 2 Unmodified _EYLTYSLKL_ ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF 125.52916310638031 0.0008761121089336018 2 [YE]{I|L}TYS{I|L}K{I|L} 9 0 + 73.219 0 0 6.4875 6.4875 92.363 0 0 0 5.865495251085861 5.865495251085861 5.865495251085861 21.164354512889844 0 1.9093793813122062 1.3979400086720375 0.5501648626366046 0.2302046884880938 + + [YE]{I|L}TYS{I|L}K{I|L};[Y{I|L}]ETYS{I|L}K{I|L};[YT]{[QN]|[E{I|L}]|[KN]}YS{I|L}K{I|L};[K{I|L}]SYT{I|L}[YE]{I|L};[K{I|L}]SY{I|L}T[YE]{I|L};[Y{I|L}][KS]T{I|L}[YE]{I|L};[Y{I|L}][KS]{I|L}T[YE]{I|L} 6.4875;4.6123;2.6689;1.3823;1.0702;0.76294;0.45089 +;-;-;-;-;-;- + 2699 + NaN NaN 301227.4 NaN 11581 3337 14918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14921 65.596 NaN 1206800 35 0 83963 0.261 + 29546 TYYRGFLTL 9 115 567.3026741681705 1132.5907954031409 2 567.3031005859375 MULTI HCD FTMS 0 0 0 14918 570205.75 0.8637955512591763 -1 0.029571533203125 3 Unmodified _TYYRGFLTL_ ENSG00000140025|ENST00000316738|EFCAB11;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;nc|ENSG00000140025|Q9BUY7-6|EFCAB11 69.33821966488729 0.009302356455414924 2 [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L} 9 0 + 77.404 0 0 6.8343 6.8343 91.229 0 0 0 2.425544237419942 2.425544237419942 2.425544237419942 11.48657795251836 0 2.2064608101803795 2 0.4247425010840047 0 + + [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L};[YT]GRY{M(Oxidation (M))|F}{I|L}T{I|L};[YT]YRG{M(Oxidation (M))|F}T{I|L}{I|L};[YT]T[HV]W{I|L}T{I|L};[YT]YRGT{M(Oxidation (M))|F}{I|L}{I|L};[YT]GRY{M(Oxidation (M))|F}T{I|L}{I|L};[YT]YRA[{M(Oxidation (M))|F}V]T{I|L};[YT]YRAS{M(Oxidation (M))|F}{I|L}{I|L};[YT]YRGVVY{I|L};[YT]GRYT{M(Oxidation (M))|F}{I|L}{I|L} 6.8343;5.8201;5.7514;4.9883;4.896;4.7372;4.6591;4.2198;4.0408;3.8818 +;-;-;-;-;-;-;-;-;- + 2903 NaN NaN 272758.6 NaN 11582 3337 14918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14922 65.599 NaN 150030 35 0 26346 0.263 + 25034 RYYLKFNFL 9 60 421.9009688208532 1262.6810770627596 3 421.90093994140625 MULTI HCD FTMS 0 0 0 14918 47284.53515625 0.3232728590162505 12 -0.29705810546875 4 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 7.289230182591677 0.29575926068275815 2 {I|L} 1 8 19.604 0 0 1.5526 0 0 1131.586180677797 0 1131.586180677797 0 1.020599913279625 0 0 0 0.5 0 0 0 + {I|L} 1.5526 + + 13 + NaN NaN 114247.5 NaN 11583 3337 14918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14923 65.602 NaN 193820 35 0 44510 0.261 -1 0 53 406.2042499890739 405.1969735224739 1 406.216796875 MULTI HCD FTMS 0 0 0 14918 12962.4990234375 0.3631931702079572 -3 0.065216064453125 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 4.1929 0 0 240.1179462781364 0 240.1179462781364 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 4.1929 - 6 + NaN NaN 132879.7 NaN 11584 3337 14918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14925 65.607 NaN 2086800 35 0 191500 0.327 + 18129 MPDFDLHL 8 99 502.2308257089257 1002.4470984846514 2 502.2314453125 MULTI HCD FTMS 0 0 0 14924 1105811.375 1 0 0 1 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 153.26226096763125 0.021936052826326328 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}{I|L}H 8 2 + 70.325 0 0 7.0154 7.0154 87.395 0 0 0 4.041272861310773 4.041272861310773 4.041272861310773 4.041272861310773 0 2.0986198691406326 0 0.8807196863200845 0 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}{I|L}H;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}{I|L}H;[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;[H{I|L}]D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}PT[YE]H{I|L};[H{I|L}]D{M(Oxidation (M))|F}D{I|L}P{M(Oxidation (M))|F};[H{I|L}]{I|L}D{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ] 7.0154;6.6122;5.112;4.6938;3.3827;2.3693;2.1761;1.9092;1.6792;1.5944 -;+;-;-;-;-;-;-;-;- + 689 + NaN NaN 406377.6 NaN 11585 3338 14924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14926 65.611 NaN 655950 35 0 51981 0.261 + 9822 HYNWLIYHL 9 85 629.82190727017 1257.6292616071398 2 629.8222045898438 MULTI HCD FTMS 0 0 0 14924 387861.0625 0.22302903140179034 18 -0.48369598388671875 2 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 96.11092074494114 0.00436583732602279 2 HYNW{I|L}{I|L}YH{I|L} 9 0 + 91.367 0 0 7.265 7.265 87.729 0 0 0 3.6991128507179383 3.6991128507179383 3.6991128507179383 3.6991128507179383 0 2.75 1.5228787452803376 0 0.3054621874040891 + + HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};{[WN]|[YH]}Q{[RE]|[WV]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}[AG]{[RE]|[WV]}{I|L}YH{I|L};{[WN]|[YH]}{I|L}[W{I|L}]NYH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}Y{I|L}H{I|L} 7.265;6.9709;6.7745;6.6807;6.2899;6.2387;5.9485;5.8982;5.7918;5.5955 +;+;-;-;-;-;-;-;-;- + 719 + NaN NaN 192681 NaN 11586 3338 14924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14927 65.615 NaN 523230 35 0 28441 0.261 + 27202 SYNNFFRMF 9 80 621.2737767427004 1240.5330005522007 2 621.2744750976562 MULTI HCD FTMS 0 0 0 14924 375270.78125 0.0679622850126966 -26 0.6496353149414062 3 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 106.94017166704063 0.003441928997083001 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 70.68 0 0 5.6976 0 0 64.00061429597766 0 64.00061429597766 0 39.912829629673624 0 0 0 2.254432191740108 0 0 0.6989700043360187 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6976 - 1322 + NaN NaN 170861.9 NaN 11587 3338 14924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14928 65.618 NaN 607920 35 0 77420 0.262 + 30653 VPDPKELLL 9 70 512.3078278674773 1022.6011028017546 2 512.3079833984375 MULTI HCD FTMS 0 0 0 14924 193290.828125 0.3310217989396696 13 -0.3330841064453125 4 Unmodified _VPDPKELLL_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-3|TACC2 28.494509381512117 0.11816142465008336 2 VPD 3 6 40.432 0 0 3.9538 0 0 0 708.4301366786633 708.4301366786633 9.981880270062007 0 0 0 0 0.75 1.3010299956639813 0 0 + VPD 3.9538 + + 90 + NaN NaN 188103 NaN 11588 3338 14924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14929 65.622 NaN 134850 35 0 7562 0.261 -1 ERMHTWNESF 10 58 451.52894423249865 1351.565003297696 3 451.5285949707031 MULTI HCD FTMS 0 0 0 14924 93969.1171875 0.6229505844877831 -3 0.06525421142578125 5 Oxidation (M) _ERM(Oxidation (M))HTWNESF_ ENST00000300305.7_1_21:36265232-36421152:-|nuORF 3.072263186857199 0.4590417271953214 2 {[RE]|[WV]}{M(Oxidation (M))|F} 3 -1 22.24 0 0 1.6455 0 0 0 916.3670412217772 916.3670412217772 4.281511349735059 0 0 0 0 0 1.6989700043360187 0 0 {[RE]|[WV]}{M(Oxidation (M))|F} 1.6455 + + 18 NaN NaN 118035.8 NaN 11589 3338 14924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14930 65.625 NaN 168970 35 0 9442.6 0.261 -1 VLCCCRLEM 9 53 592.2559336684162 NaN 0 592.28173828125 PEAK HCD FTMS 0 0 0 14924 38516.3359375 0.3101576257387576 4 -0.1013336181640625 6 2 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))C(Carbamidomethyl (C))CRLEM_ ENST00000536896.2_1_1:26145517-26146111:-|nuORF 10.823927491677226 0.2427956001690155 2 {I|L} 1 -1 8.8515 0 0 0.74854 0 0 212.15298749386426 854.2385958307249 1066.3915833245892 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.74854 + + 6 + NaN NaN 127475.5 NaN 11590 3338 14924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14932 65.63 NaN 706530 35 0 444850 0.327 -1 0 41 427.30262712631514 852.5907013194303 2 427.3026428222656 MULTI HCD FTMS 0 0 0 14931 356075 0.4007979376761036 -7 0.15995025634765625 1 NaN NaN 2 {I|L} 1 -1 3.4949 0 0 0.40991 0 0 486.3278764197781 250.16213403873283 736.4900104585109 0 0 0 0 0 0 0 0 0 {I|L} 0.40991 - 9 + NaN NaN 202263.1 NaN 11591 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14933 65.634 NaN 610410 35 0 109460 0.261 + 31580 VYIEAAIRF 9 69 541.3057795550911 1080.5970061769822 2 541.3060302734375 MULTI HCD FTMS 0 0 0 14931 208253.1875 0.2519838508956028 2 -0.0489654541015625 2 Unmodified _VYIEAAIRF_ ENSG00000204178|ENST00000374343|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1 63.960520009940105 0.0120409805053046 2 [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F} 9 0 + 103.59 0 0 9.5867 9.5867 90.725 0 0 0 11.962724883926654 77.69795311511906 11.962724883926654 3.4640156839957825 0 3.5 1.6989700043360187 0 0 + + [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}EAAR{I|L}{M(Oxidation (M))|F};[YV][DV]VA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}[RD]{I|L}[VG]{M(Oxidation (M))|F};[YV][DV]VAR{I|L}{M(Oxidation (M))|F};[YV]{I|L}E[RV][VG]{M(Oxidation (M))|F};[YV]{I|L}[RD][VG]{I|L}{M(Oxidation (M))|F} 9.5867;9.2661;6.6002;6.3052;6.2796;6.0266;5.9846 +;-;-;-;-;-;- + 680 NaN NaN 180341.6 NaN 11592 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14934 65.638 NaN 681110 35 0 112780 0.261 + 34381 YPEHISNIISL 11 71 643.3431590431238 1284.6717651530475 2 643.3436279296875 MULTI HCD FTMS 0 0 0 14931 250053.921875 0.29434130578578915 -8 0.1860809326171875 3 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 42.312485326615175 0.12205692784641806 2 GDN{I|L}{I|L}S{I|L} 7 6 64.111 0 0 4.9904 0 0 554.280077049025 0 554.280077049025 0 49.813731870357515 0 0 0 1.2396518287104437 0 0.4247425010840047 0.3494850021680094 GDN{I|L}{I|L}S{I|L} 4.9904 - 281 NaN NaN 196890.1 NaN 11593 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14935 65.641 NaN 576560 35 0 47948 0.261 + 4992 FAYIKYDNEL 10 79 638.3163942701558 1274.6182356071115 2 638.3165893554688 MULTI HCD FTMS 0 0 0 14931 166628.09375 0.17691791618984545 7 -0.1896820068359375 4 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 12.240655878213236 0.39661705172222156 2 DYS{I|L} 4 8 42.907 0 0 3.3663 0 0 778.4238627699544 0 778.4238627699544 0 30.9176003468815 0 0 0 1.274227503252014 0 0.2742275032520141 0 DYS{I|L} 3.3663 - 996 NaN NaN 174861.4 NaN 11594 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14936 65.645 NaN 408950 35 0 58432 0.261 + 11679 IYYFKANVF 9 82 582.8079870640204 1163.6014211948407 2 582.808349609375 MULTI HCD FTMS 0 0 0 14931 78792.1328125 0.2865079583326563 5 -0.1374359130859375 5 Unmodified _IYYFKANVF_ ENSG00000111229|ENST00000228825|ARPC3 74.42276476219924 0.007657080072768255 2 {I|L}YY{M(Oxidation (M))|F} 4 5 48.761 0 0 4.1905 0 0 0 574.3001192682249 574.3001192682249 24.226759565325295 0 0 0 0 1 1.6989700043360187 0 0 + {I|L}YY{M(Oxidation (M))|F} 4.1905 + + 189 + NaN NaN 155942.5 NaN 11595 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14937 65.648 NaN 269370 35 0 20768 0.261 -1 SFDGIIAMM 9 52 508.72493375642364 1015.4353145796473 2 508.7254943847656 MULTI HCD FTMS 0 0 0 14931 23914.98046875 0.29182440643277946 3 -0.07849884033203125 6 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF 21.74664581756881 0.17247014374749275 2 TS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 35.507 0 0 3.4967 0 0 331.15681655097814 0 331.15681655097814 0 35.506981269092606 0 0 0 1 0 0.4247425010840047 0 TS{I|L}A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.4967 - 30 NaN NaN 132002.9 NaN 11596 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14938 65.651 NaN 267250 35 0 13194 0.261 -1 VEHCCMRCC 9 66 578.6948552699649 1155.3751576067298 2 578.6951904296875 MULTI HCD FTMS 0 0 0 14931 29260.568359375 0.1718663343588053 23 -0.5945968627929688 7 Carbamidomethyl (C),Oxidation (M) _VEHC(Carbamidomethyl (C))CM(Oxidation (M))RCC_ ENSG00000170011|ENST00000302541|MYRIP;MYRIP|p.S404Rfs*2|1|0.41|ENSG00000170011|chr3:40190008-40190009|-/G|frameshift_variant;nc|ENSG00000170011|Q8NFW9-2|MYRIP;nc|ENSG00000170011|Q8NFW9-5|MYRIP 1.844237919475145 0.33703635659052655 2 D 1 -1 6.2591 0 0 0.54173 0 0 660.2025634678611 377.11326013736567 1037.3158236052268 0 0 0 0 0 0.5 0 0 0 D 0.54173 - 13 + NaN NaN 146887.1 NaN 11597 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14939 65.655 NaN 187230 35 0 6444.5 0.261 + 25031 RYYLKFNFL 9 43 632.3474894696266 1262.680426006053 2 632.3462524414062 MULTI HCD FTMS 0 0 0 14931 21219.962890625 0.13092472836840768 13 -0.34963226318359375 8 Unmodified _RYYLKFNFL_ ENSG00000178695|ENST00000377474|KCTD12 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F}K 2 8 6.1979 0 0 0.49085 0 0 392.20174055859053 592.2881563775999 984.4898969361905 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}K 0.49085 - 4 + NaN NaN 137591.1 NaN 11598 3339 14931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14941 65.659 NaN 2501800 35 0 306480 0.327 + 13237 KYMDIEFDF 9 94 612.2680462198797 1222.5215395065593 2 612.268310546875 MULTI HCD FTMS 0 0 0 14940 1895219.25 0.8782039586198316 -1 0.02945709228515625 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 125.52916310638031 0.0008761121089336018 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 85.626 0 0 7.0041 7.0041 92.162 0 0 0 6.279448731796862 42.21287827475011 6.279448731796862 13.534539788859945 0 2.305462187404089 0 1.6976212463643423 0.2742275032520141 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YK{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG][MT]T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};Y[YT]EK{M(Oxidation (M))|F}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};Y[YT]EKE{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};Y[YT]E{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};[DN][TP]EK{M(Oxidation (M))|F}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[DN][TP]EKE{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 7.0041;5.897;5.7598;5.2209;4.7557;4.0789;3.8697;3.8087;3.7159;3.5067 +;-;-;-;-;-;-;-;-;- + 6970 NaN NaN 491449.2 NaN 11599 3340 14940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14942 65.664 NaN 448620 35 0 37106 0.261 + 5672 FPAARRCHSC 10 81 574.2672043013438 1146.5198556694875 2 574.2677001953125 MULTI HCD FTMS 0 0 0 14940 181524.640625 0.3223251861830048 4 -0.10797882080078125 2 Unmodified _FPAARRCHSC_ ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 7.101721422024254 0.4377131641736035 2 {I|L}D{I|L}{I|L}HAPE 8 10 35.194 0 0 3.0696 0 0 240.02467543769689 0 240.02467543769689 0 20.501028671128623 0 0 0 1.5994850021680094 0 0.3807196863200844 0 {I|L}D{I|L}{I|L}HAPE 3.0696 - 191 NaN NaN 164408.2 NaN 11600 3340 14940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14943 65.667 NaN 567380 35 0 144330 0.261 + 13893 KYQELQVLF 9 89 584.323897458298 1166.633241983396 2 584.3245239257812 MULTI HCD FTMS 0 0 0 14940 117566.265625 0.18229382342215503 8 -0.2024688720703125 3 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 19.361941925380144 0.1930734562688509 2 QV{I|L}{M(Oxidation (M))|F} 4 5 38.532 0 0 3.3028 0 0 661.34348844229 0 661.34348844229 0 -2.420299789533402 -2.420299789533402 0 0 1.2614393726401687 0 0 0 + QV{I|L}{M(Oxidation (M))|F} 3.3028 + + 994 NaN NaN 178636.6 NaN 11601 3340 14940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14944 65.671 NaN 191550 35 0 40089 0.261 + 24157 RYFDALLKL 9 45 569.8343646615209 1137.6541763898417 2 569.8339233398438 MULTI HCD FTMS 0 0 0 14940 145635.984375 1 0 0 4 Unmodified _RYFDALLKL_ ENSG00000183856|ENST00000361170|IQGAP3 13.614867670302875 0.2427269026982664 2 A{I|L}{I|L}K{I|L} 5 4 36.911 0 0 3.2445 0 0 581.2592466739012 0 581.2592466739012 0 36.91122510072759 0 0 0 1 0 0 0 + A{I|L}{I|L}K{I|L} 3.2445 + + 24 NaN NaN 119388.3 NaN 11602 3340 14940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14945 65.674 NaN 145420 35 0 5892.7 0.261 + 12313 KLYIEWSL 8 64 526.2930197127872 NaN 0 526.28271484375 PEAK HCD FTMS 0 0 0 14940 9725.830078125 0.8784216925109087 -1 0.02945709228515625 5 Unmodified _KLYIEWSL_ REV__ENSG00000142185|ENST00000397928|TRPM2;REV__nc|ENSG00000142185|O94759-2|TRPM2 4.75600775471527 0.38822285293237185 2 QVE 3 -1 13.188 0 0 1.2553 0 0 131.15298170897432 560.2208346002561 691.3738163092305 0 0 0 0 0 0 0 0 0 QVE 1.2553 - 36 + NaN NaN 118002.1 NaN 11603 3340 14940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14947 65.679 NaN 3159100 35 0 411680 0.327 + 6576 FPLDLDVKM 9 122 547.2840734785718 1092.5535940239436 2 547.7723388671875 MULTI HCD FTMS 0 0 0 14946 288995.6875 0.5905731672193794 7 -0.18296051025390625 1 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 80.6760300276096 0.005633624786464751 2 {M(Oxidation (M))|F}{I|L}PD{I|L}DVK{M(Oxidation (M))|F} 9 2 + 76.773 0 0 7.0269 7.0269 91.733 0 0 0 24.517667989360845 14.092568545288053 14.092568545288053 11.933115814076345 0 2.055462187404089 2 0 0 {M(Oxidation (M))|F}{I|L}PD{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DV{M(Oxidation (M))|F}Q;[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}P{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}PD{I|L}[SG]VV{M(Oxidation (M))|F};{M(Oxidation (M))|F}PDD{I|L}{I|L}VK{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}D{I|L}[SG]M[{I|L}T] 7.0269;5.9347;5.6019;4.94;4.2583;3.9172;3.7487;3.7125;3.374;3.3185 -;+;+;-;-;-;-;-;-;- + 4677 + NaN NaN 580821.7 NaN 11604 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14948 65.683 NaN 1016500 35 0 68792 0.261 + 32125 VYSFGFERL 9 118 559.2874934848479 1116.5604340364957 2 559.2688598632812 MULTI HCD FTMS 0 0 0 14946 57556.70703125 0.04844404336583321 28 -0.7434158325195312 2 Unmodified _VYSFGFERL_ ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;nc|ENSG00000152683|Q6NXT4-4|SLC30A6 29.84058131909904 0.11198220037953927 2 [YV]S{M(Oxidation (M))|F}GTVTP 9 4 41.292 0 0 3.6982 0 0 0 162.0557039850219 162.0557039850219 23.5616031431335 0 0 0 0 0.5796896906561032 1.3979400086720375 1.1549471895720984 0 [YV]S{M(Oxidation (M))|F}GTVTP 3.6982 - 4234 + NaN NaN 245641.2 NaN 11605 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14949 65.687 NaN 362520 35 0 22426 0.261 + 11466 IYQFIMDRF 9 71 624.807632095184 1247.6007112571679 2 624.8080444335938 MULTI HCD FTMS 0 0 0 14946 117744.296875 0.35973275564532337 20 -0.5260696411132812 3 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 57.107585691075435 0.021627766313179933 2 {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 0 + 90.288 0 0 7.237 7.237 87.762 0 0 0 3.9620533287528303 3.9620533287528303 3.9620533287528303 3.9620533287528303 0 2.947621246364342 1.6989700043360187 0 0 + + {I|L}YQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}Y[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[YV]AA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};{I|L}[HA]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}AAP{M(Oxidation (M))|F};{I|L}YQ[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[YV]{I|L}{[MG]|[TS]}[{M(Oxidation (M))|F}T]DR{M(Oxidation (M))|F} 7.237;6.9194;6.4989;6.3828;6.1813;4.4321;4.2843;4.1785;4.1785;3.7593 +;+;-;-;-;-;-;-;-;- + 418 + NaN NaN 146733.7 NaN 11606 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14950 65.69 NaN 126550 35 0 27854 0.264 + 31002 VSGNRPQI 8 48 435.74360170853697 NaN 0 435.7319030761719 PEAK HCD FTMS 0 0 0 14946 8093.9248046875 1 0 0 4 Unmodified _VSGNRPQI_ REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__nc|ENSG00000157106|Q96Q15-3|SMG1;REV__nc|ENSG00000157106|Q96Q15-4|SMG1;REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant 5.760428011301431 0.38822285293237185 2 QVD 3 -1 15.93 0 0 1.8321 0 0 131.1174029512643 393.1775301568969 524.2949331081612 0 0 0 0 0 0 0 0 0.4247425010840047 QVD 1.8321 - 24 + NaN NaN 100332.8 NaN 11607 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14951 65.694 NaN 537250 35 0 114560 0.261 + 17324 LYPQRYEQRF 10 72 467.241897757729 1398.703863873387 3 467.2328796386719 MULTI HCD FTMS 0 0 0 14946 23702.447265625 0.039341773469971024 20 -0.5260696411132812 5 Unmodified _LYPQRYEQRF_ REV__ENSG00000122008|ENST00000241436|POLK;REV__nc|ENSG00000122008|Q9UBT6-3|POLK;REV__nc|ENSG00000122008|Q9UBT6-8|POLK 3.876331618118854 0.45478566516190344 2 EE[WE]{I|L}N 6 -1 14.058 0 0 1.0051 0 0 0 595.3475869875687 595.3475869875687 -0.9199419632364858 0 -0.9199419632364858 0 0 0 0 0.28872548999643577 0 EE[WE]{I|L}N 1.0051 - 209 NaN NaN 167886 NaN 11608 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14952 65.697 NaN 223210 35 0 27839 0.261 -1 MSIEIPAGL 9 50 494.75468566109913 NaN 0 494.7547607421875 PEAK HCD FTMS 0 0 0 14946 57063.31640625 0.6951884491485111 -7 0.15653228759765625 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))SIEIPAGL_ ENSG00000005249|ENST00000265717|PRKAR2B 11.640296217721598 0.23883959125015683 2 GV 2 -1 19.464 0 0 1.971 0 0 131.09346448450452 697.2874145717573 828.3808790562618 0 0 0 0 0 1 0 0 0 GV 1.971 - 9 + NaN NaN 118162 NaN 11609 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14953 65.7 NaN 174960 35 0 27714 0.261 + 8131 GMKLSATVIF 10 51 533.8040692570838 NaN 0 533.8035278320312 PEAK HCD FTMS 0 0 0 14946 15685.279296875 0.36891504877515907 1 -0.02953338623046875 7 Unmodified _GMKLSATVIF_ ENSG00000159733|ENST00000290974|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-5|ZFYVE28 6.723162845929126 0.3344301934401713 2 Y 1 10 5.4846 0 0 0.51469 0 0 112.13388206709881 787.3731783502561 899.507060417355 0 0 0 0 0 0 0 0 0 Y 0.51469 - 18 + NaN NaN 108971.7 NaN 11610 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14954 65.704 NaN 211960 35 0 62590 0.262 + 17785 MFALLYLMLF 10 55 421.2289136100526 1260.6649114303577 3 421.22906494140625 MULTI HCD FTMS 0 0 0 14946 10177.587890625 0.039145888572325066 -5 0.12088775634765625 8 Unmodified _MFALLYLMLF_ REV__ENSG00000225781|ENST00000418316|OR6V1;REV__OR6V1|p.N40Kfs*11|1|0.26|ENSG00000225781|chr7:143052453-143052454|-/G|frameshift_variant 4.3292370932331545 0.45238836448149167 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.06 0 0 982.4988943976053 0 982.4988943976053 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.06 + + 2 NaN NaN 117960.2 NaN 11611 3341 14946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14956 65.708 NaN 882290 35 0 82750 0.327 + 15575 LPDTILEKL 9 96 521.3130810613759 1040.6116091895517 2 521.313232421875 MULTI HCD FTMS 0 0 0 14955 296037.4375 0.6514568796548486 -4 0.1013336181640625 1 Unmodified _LPDTILEKL_ ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7 100.0907132914201 0.004261551473353346 2 {I|L}PES{I|L}{I|L}EK{I|L} 9 2 + 76.328 0 0 7.3349 7.3349 87.149 0 0 0 15.464752771404733 1.9968779091581723 1.9968779091581723 1.9968779091581723 0 2.4776296993281406 1.6989700043360187 0.6747425010840047 0.2742275032520141 {I|L}PES{I|L}{I|L}EK{I|L};[{I|L}P]ES{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}E{I|L}K{I|L};[{I|L}P]ES{I|L}E{I|L}K{I|L};[EP]S{I|L}{I|L}{I|L}EK{I|L};[EP]VT{I|L}{I|L}EK{I|L};[EP]{I|L}S{I|L}{I|L}EK{I|L};[EP]S{I|L}{I|L}E{I|L}K{I|L};[{I|L}P]ES{I|L}{I|L}T[VG]{I|L} 7.3349;7.143;7.143;6.3732;6.3732;5.9607;5.8026;5.8026;5.191;5.0679 -;-;+;-;-;-;-;-;-;- + 1369 + NaN NaN 218743.4 NaN 11612 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14957 65.713 NaN 370260 35 0 99879 0.261 + 23197 RFLNDPGHLLW 11 49 456.57865725541933 1366.714142366458 3 456.578857421875 MULTI HCD FTMS 0 0 0 14955 138460.03125 0.03917002654853612 22 -0.5750579833984375 2 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 29.28111348798908 0.2059830635689761 2 PGH{I|L}{I|L}W 6 5 26.788 0 0 1.9601 0 0 645.3235834770883 0 645.3235834770883 0 23.689484449251957 0 0 0 1.3935078169319297 0 0 0 + PGH{I|L}{I|L}W 1.9601 + + 50 + NaN NaN 163718.2 NaN 11613 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14958 65.716 NaN 174720 35 0 20977 0.261 -1 0 44 499.7793929430859 997.5442329529718 2 499.7796630859375 MULTI HCD FTMS 0 0 0 14955 90006.3203125 0.2993589543045055 8 -0.218963623046875 3 NaN NaN 2 {I|L}{I|L} 2 -1 25.969 0 0 2.6033 0 0 753.3645546064755 0 753.3645546064755 0 8.974315640635595 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6033 - 36 NaN NaN 108271.1 NaN 11614 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14959 65.72 NaN 190400 35 0 23886 0.261 + 15793 LPHLEAVVI 9 49 495.8026687868586 989.5907846405172 2 495.8027038574219 MULTI HCD FTMS 0 0 0 14955 55914.19921875 0.43950024087403655 -4 0.1013336181640625 4 Unmodified _LPHLEAVVI_ ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-12|APTX;nc|ENSG00000137074|Q7Z2E3-13|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3|APTX 10.823927491677226 0.26684000660059787 2 VAV{I|L} 4 6 31.542 0 0 3.1874 0 0 589.329393455275 0 589.329393455275 0 20.573193899842437 0 0 0 0.5 0 0 0 VAV{I|L} 3.1874 - 61 NaN NaN 112307.2 NaN 11615 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14960 65.723 NaN 426030 35 0 34548 0.261 + 18513 MSEMETLEIQL 11 70 441.87797429523505 1322.6120934859052 3 441.8773498535156 MULTI HCD FTMS 0 0 0 14955 38274.8984375 0.5093952225771482 -4 0.1013336181640625 5 Unmodified _MSEMETLEIQL_ REV__ENSG00000040275|ENST00000265295|SPDL1;REV__ENST00000507232.5_1_5:169018105-169028825:+|nuORF;REV__ENST00000510751.5_1_5:169015420-169022772:+|nuORF;REV__nc|ENSG00000040275|Q96EA4-2|SPDL1 13.51866281300042 0.33929385944539686 2 {I|L}YY[WR]V{I|L} 7 -1 31.458 0 0 2.3785 0 0 311.1098805158219 0 311.1098805158219 0 16.76554474077804 0 0 0 0.4247425010840047 0 0 0 {I|L}YY[WR]V{I|L} 2.3785 - 108 NaN NaN 154556.1 NaN 11616 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14961 65.726 NaN 357410 35 0 25731 0.261 -1 LYNMIKIF 8 83 529.2917161296364 NaN 0 529.2918090820312 PEAK HCD FTMS 0 0 0 14955 42346.125 0.765010873271624 1 -0.029449462890625 6 Oxidation (M) _LYNM(Oxidation (M))IKIF_ ENST00000304385.7_1_4:153547731-153547917:-|nuORF 19.438996006549623 0.38500361301801034 2 E 1 -1 9.732 0 0 0.92109 0 0 665.4311362614227 259.07233606510005 924.5034723265228 0 0 0 0 0 0 0 0.4247425010840047 0 E 0.92109 - 56 + NaN NaN 157012 NaN 11617 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14962 65.73 NaN 296030 35 0 45020 0.261 -1 MRRRSRMLLCF 11 71 514.6048430206721 NaN 0 514.2222290039062 PEAK HCD FTMS 0 0 0 14955 8534.0947265625 0.7882900196474606 1 -0.029449462890625 7 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))RRRSRMLLC(Carbamidomethyl (C))F_ ENSG00000143641|ENST00000366672|GALNT2;ENST00000488903.1_1_1:230203027-230227371:+|nuORF 0.5059551277355931 0.3406848944787997 2 PPG 3 -1 9.2082 0 0 0.89644 0 0 610.9908617231816 162.0554140680297 773.0462757912113 0 0 0 0 0 0 0 0 0 PPG 0.89644 - 58 + NaN NaN 135828.5 NaN 11618 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14963 65.733 NaN 253550 35 0 33416 0.261 + 28101 TIAEIKNLF 9 57 524.8053500955941 1047.5961472579882 2 524.8062744140625 MULTI HCD FTMS 0 0 0 14955 75345.203125 0.5969197948130873 -9 0.22222900390625 8 Unmodified _TIAEIKNLF_ ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF 36.506200033944 0.08138327636155518 2 [{I|L}T]AE 4 5 46.242 0 0 4.4141 0 0 0 630.3611193313288 630.3611193313288 18.807196863200843 0 0 0 0 1.305462187404089 2 0 0 + [{I|L}T]AE 4.4141 + + 62 + NaN NaN 125452 NaN 11619 3342 14955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14965 65.738 NaN 1525800 35 0 223370 0.327 + 5199 FFDAELSQM 9 101 552.2391290246032 1102.4637051160064 2 552.2392578125 MULTI HCD FTMS 0 0 0 14964 655115.6875 0.18196621789592538 27 -0.717315673828125 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 95.398 2.2185 0.75424 8.6532 8.6532 68.318 0 0 0 0 52.584332360687824 0 0 0 3.1747425010840047 0 1.7856668758921828 0.6989700043360187 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.6532 + + 2405 + NaN NaN 317322.9 NaN 11620 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14966 65.742 NaN 1400900 35 0 71182 0.261 + 29547 TYYRGFLTL 9 119 567.3026741681705 1132.5907954031409 2 567.302978515625 MULTI HCD FTMS 0 0 0 14964 372135.75 0.5637424829800419 5 -0.1239776611328125 2 Unmodified _TYYRGFLTL_ ENSG00000140025|ENST00000316738|EFCAB11;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;nc|ENSG00000140025|Q9BUY7-6|EFCAB11 71.70789743142352 0.008535567138151097 2 [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L} 9 0 + 70.16 0 0 6.1947 6.1947 91.27 0 0 0 25.81616942486791 43.1914468044949 25.81616942486791 16.237125054200234 0 1.8979400086720375 2 0.6109243748081782 0 + + [YT]YRG{M(Oxidation (M))|F}{I|L}T{I|L};[YT]G[YR]{M(Oxidation (M))|F}{I|L}T{I|L};[YT]YRA[{M(Oxidation (M))|F}V]T{I|L};[YT]YRGVVY{I|L};[YT]YRA[{I|L}A]Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[YR]{M(Oxidation (M))|F}{I|L}T{I|L};[YT]G[YV][RV]Y{I|L};[YT]G[YR]VVY{I|L};{[HG]|PP}[NG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};[{I|L}T][NP]N[W{I|L}]Y{I|L} 6.1947;4.7611;4.2744;3.2345;2.8132;2.7305;2.4918;1.8009;1.1476;0.60977 +;-;-;-;-;-;-;-;-;- + 1653 NaN NaN 305173.1 NaN 11621 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14967 65.746 NaN 1210500 35 0 59420 0.261 + 6344 FPFYYEIKM 9 101 627.2987934101918 1252.5830338871835 2 627.2991333007812 MULTI HCD FTMS 0 0 0 14964 474854.65625 0.3445534861708318 -3 0.0784912109375 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 67.83816525789305 0.009787749748478139 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 70.724 0 0 5.6462 5.6462 84.54 0 0 0 2.8258344212375164 2.8258344212375164 2.8258344212375164 2.8258344212375164 0 2.309894379144197 0 0.6989700043360187 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYYP{M(Oxidation (M))|F}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}{M(Oxidation (M))|F}PYYE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}PV[DG]CVE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC[DG]VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKYP{M(Oxidation (M))|F}E 5.6462;5.4206;5.3314;5.0214;4.9027;4.6244;4.5088;4.4757;4.2501;4.2252 +;-;+;-;-;-;-;-;-;- + 5330 + NaN NaN 289118.2 NaN 11622 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14968 65.749 NaN 843730 35 0 108750 0.261 + 13383 KYNLINEYF 9 78 602.3062821730254 1202.5980114128506 2 602.3069458007812 MULTI HCD FTMS 0 0 0 14964 319048.90625 0.8174036903706223 -2 0.05898284912109375 4 Unmodified _KYNLINEYF_ ENSG00000153936|ENST00000370550|HS2ST1;nc|ENSG00000153936|Q7LGA3-2|HS2ST1 100.0907132914201 0.004261551473353346 2 [YK]N{I|L}{I|L}NEY{M(Oxidation (M))|F} 9 0 + 95.143 0 0 7.9115 7.9115 89.612 0 0 0 5.6424927368725974 71.45365019512084 5.6424927368725974 5.708253071758875 0 2.9247425010840047 0 0 1.7302046884880937 + + [YK]N{I|L}{I|L}NEY{M(Oxidation (M))|F};KYN{I|L}{I|L}NEY{M(Oxidation (M))|F};[YK]N{I|L}{I|L}GGEY{M(Oxidation (M))|F};[YK]GG{I|L}{I|L}NEY{M(Oxidation (M))|F};KYGG{I|L}{I|L}NEY{M(Oxidation (M))|F};KYN{I|L}{I|L}GGEY{M(Oxidation (M))|F};[YK]GG{I|L}{I|L}GGEY{M(Oxidation (M))|F};KYGG{I|L}{I|L}GGEY{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[DV]N{I|L}[QP]K{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[DV]N{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q 7.9115;7.4368;7.1458;7.1458;6.6711;6.6711;6.3837;5.9091;4.6833;4.3005 +;+;-;-;-;-;-;-;-;- + 609 NaN NaN 229915.3 NaN 11623 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14969 65.753 NaN 1935400 35 0 263370 0.261 + 15398 LPDGYEFKF 9 121 558.2736790123616 1114.5328050915232 2 558.7632446289062 MULTI HCD FTMS 0 0 0 14964 29448.94921875 0.2260768255608355 2 -0.05899810791015625 5 Unmodified _LPDGYEFKF_ ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF;ENST00000472321.1_1_22:38074415-38075753:+|nuORF 34.93206674587334 0.08860942999206235 2 {I|L}EENEKEA 8 7 62.695 0 0 5.6252 0 0 0 169.06183801822502 169.06183801822502 34.51232109984816 0 0 0 0 0 1.3979400086720375 0.9049471895720984 0.6861818737241735 {I|L}EENEKEA 5.6252 - 5238 + NaN NaN 387433.8 NaN 11624 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14970 65.756 NaN 1538200 35 0 513890 0.261 -1 FGLDCEMCLT 10 104 574.2273512979058 1146.4401496626115 2 574.2277221679688 MULTI HCD FTMS 0 0 0 14964 358923.21875 0.15147082360150177 -4 0.10794830322265625 6 Oxidation (M) _FGLDCEM(Oxidation (M))CLT_ ENSG00000005189|ENST00000261377|REXO5;nc|ENSG00000005189|Q96IC2-2|REXO5 10.073929032068715 0.4168838835836452 2 YT{M(Oxidation (M))|F} 3 -1 17.167 0 0 1.4974 0 0 717.2502294150335 0 717.2502294150335 0 4.658044088628937 0 0 0 0 0 0 0 YT{M(Oxidation (M))|F} 1.4974 - 221 + NaN NaN 331886.1 NaN 11625 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14971 65.759 NaN 396470 35 0 40812 0.261 + -1 IYCPIMPCR 9 81 576.7726480060784 1151.5307430789567 2 576.7727661132812 MULTI HCD FTMS 0 0 0 14964 10186.21875 0.1714375538727112 6 -0.146759033203125 7 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))PIMPCR_ REV__ENSG00000035862|ENST00000262768|TIMP2 5.230669730166228 0.3113646817964458 2 Y 1 -1 5.4846 0 0 0.47628 0 0 132.17692358805215 853.2692052921126 985.4461288801647 0 0 0 0 0 0 0 0 0 Y 0.47628 + + 49 + NaN NaN 163917.8 NaN 11626 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14972 65.762 NaN 224260 35 0 33752 0.261 + 8216 GRGKKASYSI 10 57 533.8040692570838 NaN 0 533.802001953125 PEAK HCD FTMS 0 0 0 14964 30233.41015625 0.7110845635151998 3 -0.08173370361328125 8 Unmodified _GRGKKASYSI_ REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT 3.2813086475875832 0.33737594360511275 2 G 1 -1 5.4846 0 0 0.51469 0 0 162.1165480827238 843.4227388971311 1005.539286979855 0 0 0 0 0 0 0 0 0 G 0.51469 + + 12 + NaN NaN 124860.5 NaN 11627 3343 14964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14974 65.767 NaN 925420 35 0 537210 0.327 -1 0 61 427.30262712631514 852.5907013194303 2 427.30267333984375 MULTI HCD FTMS 0 0 0 14973 505943.375 0.5694897459268062 -2 0.05893707275390625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.4063 0 0 687.5119792508741 0 687.5119792508741 0 7.921656121837656 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4063 - 20 + NaN NaN 228637.5 NaN 11628 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14975 65.772 NaN 1032600 35 0 98047 0.261 + 18130 MPDFDLHL 8 86 502.2308257089257 1002.4470984846514 2 502.2314453125 MULTI HCD FTMS 0 0 0 14973 584760.5625 0.5288067890421185 6 -0.16002655029296875 2 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 123.09622228370866 0.026049610693970805 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 62.45 0 0 6.2298 6.2298 84.623 0 0 0 0.7133375178436623 0.7133375178436623 0.7133375178436623 0.7133375178436623 0 2.1549471895720984 0 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L};{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};[YN][VG]{NN|[MP]|[D{I|L}]|[EV]}PPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ] 6.2298;6.1586;4.2613;2.0958;0.98347;0.97479 +;+;-;-;-;- + 399 NaN NaN 247986.6 NaN 11629 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14976 65.775 NaN 811360 35 0 92122 0.261 + 34720 YPVEVELKL 9 89 545.3145549283953 1088.6145569235905 2 545.30322265625 MULTI HCD FTMS 0 0 0 14973 21148.82421875 0.6440089645740882 -2 0.05893707275390625 3 Unmodified _YPVEVELKL_ ENSG00000013563|ENST00000369807|DNASE1L1 22.736283301280096 0.1639198954644489 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AK{M(Oxidation (M))|F}YT{I|L} 8 7 59.858 0 0 5.4985 0 0 0 128.09537445467052 128.09537445467052 -0.12111929633611851 0 -0.12111929633611851 0 0 0 2 0.7742275032520141 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AK{M(Oxidation (M))|F}YT{I|L} 5.4985 - 1216 NaN NaN 230763.8 NaN 11630 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14977 65.779 NaN 1139200 35 0 265670 0.261 + 19685 NWPSRPYLF 9 113 590.3006754291683 1178.5867979251366 2 590.3010864257812 MULTI HCD FTMS 0 0 0 14973 246522.078125 0.5205478896141389 -2 0.05893707275390625 4 Unmodified _NWPSRPYLF_ ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B 53.40400417844725 0.026808823219830042 2 NWPSR{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F} 9 0 + 59.319 0 0 5.033 5.033 88.503 0 0 0 49.26434610207279 0.3733416535127958 0.3733416535127958 12.239704346135731 0 2.0356668758921828 1.6989700043360187 0.3054621874040891 0 + + NWPSR{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F};NWPS[YK]K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};NW{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};NPWSR{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F};N{[DA]|[EG]}P[KC]{M(Oxidation (M))|F}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};NPWS[YK]K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};NP{[DA]|[EG]}[KC]{M(Oxidation (M))|F}K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K[YK]SHQN;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{M(Oxidation (M))|F}{I|L}[VG]{[HG]|PP}{M(Oxidation (M))|F} 5.033;3.9945;3.8474;2.507;2.1765;1.4685;1.092;0.54909;0.073671 +;-;-;-;-;-;-;-;- + 691 + NaN NaN 270863 NaN 11631 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14978 65.782 NaN 548980 35 0 30271 0.261 + 27203 SYNNFFRMF 9 82 621.2737767427004 1240.5330005522007 2 621.2744140625 MULTI HCD FTMS 0 0 0 14973 273729.25 0.04957291170616999 -20 0.4965362548828125 5 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 110.5527297667825 0.0028521687250969148 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 84.676 0 0 6.8258 6.8258 89.947 0 0 0 12.147642715192504 66.73902187720806 12.147642715192504 9.208187539523749 0 3 0 0.6505149978319906 1.610924374808178 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NN[MT];[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[NP]TNN[MT];{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}NN[MT];{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}GGN[MT];{[QC]|[C(Carbamidomethyl (C))A]}[RV]E{M(Oxidation (M))|F}NGG[MT];{[{M(Oxidation (M))|F}D]|MM}A{[NV]|[RG]}{[ES]|[DT]|[{I|L}C]}NN[MT] 6.8258;6.0835;6.0835;4.6954;2.0124;1.8485;1.3553;1.2737;1.2737;1.1799 +;-;-;-;-;-;-;-;-;- + 1332 NaN NaN 175430.3 NaN 11632 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14979 65.785 NaN 504780 35 0 36117 0.261 + 9823 HYNWLIYHL 9 70 629.82190727017 1257.6292616071398 2 629.8222045898438 MULTI HCD FTMS 0 0 0 14973 237109.4375 0.1363433798716218 24 -0.6320343017578125 6 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 103.35351024395868 0.004027461563756449 2 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 101.39 0 0 8.0622 8.0622 90.076 0 0 0 6.332946754800375 6.332946754800375 6.332946754800375 6.332946754800375 0 2.774227503252014 1.5228787452803376 0 1.079689690656103 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}NW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}Q{[RE]|[WV]}YH{I|L};{[WN]|[YH]}GGW{I|L}Y{I|L}H{I|L};{[WN]|[YH]}{I|L}{I|L}{[WN]|[YH]}YH{I|L};{[WN]|[YH]}{I|L}[AG]{[RE]|[WV]}YH{I|L} 8.0622;7.5586;7.33;7.0073;6.769;6.6277;6.5624;6.2752;6.132;5.8303 +;+;-;-;-;-;-;-;-;- + 659 NaN NaN 160144.3 NaN 11633 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14980 65.789 NaN 578910 35 0 65353 0.261 + 27307 SYQKVIELF 9 81 563.8107231126356 1125.6068932920712 2 563.81103515625 MULTI HCD FTMS 0 0 0 14973 162087.53125 0.04577971772839439 24 -0.6320343017578125 7 Unmodified _SYQKVIELF_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 53.31671820480216 0.026930930319421505 2 [YN]TKV{I|L}E{I|L}{M(Oxidation (M))|F} 9 2 + 60.293 0 0 5.3565 5.3565 83.381 0 0 0 11.73393743112328 15.083647583557394 11.73393743112328 1.2417572044214609 0 2.048455006504028 1.2218487496163564 0 0 [YN]TKV{I|L}E{I|L}{M(Oxidation (M))|F};[YN]{I|L}[KS]{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QKV{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[AG]KV{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YT]V{I|L}{M(Oxidation (M))|F}KN 5.3565;5.2462;4.314;3.496;3.4001;2.1785 -;-;+;-;-;- + 408 NaN NaN 190158.3 NaN 11634 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14981 65.792 NaN 320310 35 0 40216 0.261 + 30654 VPDPKELLL 9 65 512.3078278674773 1022.6011028017546 2 512.3079223632812 MULTI HCD FTMS 0 0 0 14973 45296.4453125 0.07757280031528196 19 -0.4966278076171875 8 Unmodified _VPDPKELLL_ ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-3|TACC2 19.361941925380144 0.1930734562688509 2 VPD 3 6 35.718 0 0 3.4929 0 0 0 708.4304827954355 708.4304827954355 8.550981955100383 0 0 0 0 0.4247425010840047 1.154901959985743 0 0 + VPD 3.4929 + + 77 + NaN NaN 131486.9 NaN 11635 3344 14973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14983 65.797 NaN 1603500 35 0 196390 0.327 + 13238 KYMDIEFDF 9 80 612.2680462198797 1222.5215395065593 2 612.2681884765625 MULTI HCD FTMS 0 0 0 14982 1180063.75 0.5468162359968448 4 -0.08776092529296875 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 100.0907132914201 0.004261551473353346 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 79.478 0 0 6.5012 6.5012 92.526 0 0 0 3.2568864632742844 44.60917821584665 3.2568864632742844 22.491596866368013 0 2.6861818737241734 0 1.055462187404089 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG][MT]T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[PA]KD{[SA]|[TG]}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}EEV{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]K;[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{I|L}D{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]K 6.5012;4.6614;2.6549;2.3575;2.0148;2.0007;1.8963;1.5223;1.3606;1.3235 +;-;-;-;-;-;-;-;-;- + 1588 NaN NaN 345667.5 NaN 11636 3345 14982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14984 65.801 NaN 843050 35 0 140810 0.261 + 34382 YPEHISNIISL 11 91 643.3431590431238 1284.6717651530475 2 643.3430786132812 MULTI HCD FTMS 0 0 0 14982 708360.5625 0.8338192473447127 -2 0.05899810791015625 2 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 47.7319792270244 0.09073169250052475 2 N{I|L}{I|L}S{I|L} 5 6 57.206 0 0 4.453 0 0 726.3324452130875 0 726.3324452130875 0 36.54098056724898 0 0 0 1 0 0.4247425010840047 0.6505149978319906 + N{I|L}{I|L}S{I|L} 4.453 + + 387 NaN NaN 219247 NaN 11637 3345 14982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14985 65.805 NaN 1335000 35 0 100300 0.261 + 2919 DYSPYFKTI 9 115 567.2792195549672 1132.5438861767343 2 567.2792358398438 MULTI HCD FTMS 0 0 0 14982 257545.75 0.012249133557472475 107 -2.8666229248046875 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.72198328787511 0.020768266150574023 2 M{M(Oxidation (M))|F}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K 7 4 59.307 0 0 5.2366 0 0 0 229.11896692447502 229.11896692447502 22.19351057653448 0 0 0 0 1.5044321917401078 1.5228787452803376 0.9604093769761876 0 M{M(Oxidation (M))|F}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K 5.2366 - 1109 + NaN NaN 298243.4 NaN 11638 3345 14982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14986 65.808 NaN 306310 35 0 28656 0.261 + 31581 VYIEAAIRF 9 69 541.3057795550911 1080.5970061769822 2 541.30615234375 MULTI HCD FTMS 0 0 0 14982 76655.6875 0.09275245945179075 8 -0.20218658447265625 4 Unmodified _VYIEAAIRF_ ENSG00000204178|ENST00000374343|MACO1;ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1 63.960520009940105 0.0120409805053046 2 [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F} 9 0 + 90.288 0 0 8.3554 8.3554 91.575 0 0 0 4.621440527729419 59.21372428147208 4.621440527729419 8.979400086720375 0 3.4247425010840047 1.5228787452803376 0 0 + + [YV]{I|L}EAA{I|L}R{M(Oxidation (M))|F};[YV]{I|L}EAAR{I|L}{M(Oxidation (M))|F};[YV]{I|L}[RD]{I|L}[VG]{M(Oxidation (M))|F};[YV]{I|L}E[RV][VG]{M(Oxidation (M))|F};[YV]{I|L}[RD][VG]{I|L}{M(Oxidation (M))|F} 8.3554;7.5244;5.0739;5.0739;4.2429 +;-;-;-;- + 519 NaN NaN 127883.7 NaN 11639 3345 14982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14987 65.811 NaN 320410 35 0 30035 0.261 + 4993 FAYIKYDNEL 10 63 638.3163942701558 1274.6182356071115 2 638.3165283203125 MULTI HCD FTMS 0 0 0 14982 91352.3359375 0.09699363744378929 13 -0.33956146240234375 5 Unmodified _FAYIKYDNEL_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 8.155526934196011 0.43213520406898465 2 DYS{I|L} 4 8 36.472 0 0 2.8614 0 0 778.4214344709 0 778.4214344709 0 20.503122090841828 0 0 0 1.2059771852360797 0 0 0 DYS{I|L} 2.8614 - 37 NaN NaN 144431.5 NaN 11640 3345 14982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14988 65.815 NaN 1405400 35 0 233580 0.264 + 28832 TVFDQPQE 8 98 482.2245811549735 962.4346093767471 2 482.22454833984375 MULTI HCD FTMS 0 0 0 14982 150799.234375 0.684790106708085 -2 0.05899810791015625 6 Unmodified _TVFDQPQE_ DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;ENSG00000103423|ENST00000262375|DNAJA3;ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;nc|ENSG00000103423|Q96EY1-3|DNAJA3 107.99703571036002 0.036978982887966305 2 TAAENET 7 7 108.81 0 0 11.306 0 0 0 243.11382471256096 243.11382471256096 69.63209009780763 0 0 0 0 2.1237125054200234 1.6989700043360187 2.249134866972623 1.110924374808178 TAAENET 11.306 - 4221 + NaN NaN 303823.4 NaN 11641 3345 14982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14990 65.819 NaN 24966000 35 0 4426200 0.327 + 27534 TAAENEFVTL 10 97 547.7718074841189 1093.5290620350377 2 547.7725219726562 MULTI HCD FTMS 0 0 0 14989 25392350 0.9249324504828108 -1 0.022735595703125 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 228.36842504977758 1.5959189353506314E-32 2 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 121.25 0 0 11.088 11.088 96.358 0 0 0 16.026909627198407 13.278324880759484 13.278324880759484 13.278324880759484 0 2.9361818737241734 1.3010299956639813 2.0713337517843655 1.4802046884880937 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};[TA]AENE{M(Oxidation (M))|F}V{I|L}T;{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}V{I|L}T;{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}V{I|L}T;{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};[TP]{[CA]|SS}NE{M(Oxidation (M))|F}VT{I|L} 11.088;9.8739;9.6226;9.5723;8.8965;8.7302;8.4083;8.358;8.1575;7.9709 +;-;-;-;-;-;-;-;-;- + 4697 NaN NaN 834232.3 NaN 11642 3346 14989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14991 65.824 NaN 1292100 35 0 139560 0.261 -1 LTMCVFTCT 9 111 566.7450977851911 1131.475642637182 2 566.7455444335938 MULTI HCD FTMS 0 0 0 14989 583881.5625 0.836921325173248 -1 0.022735595703125 2 2 Carbamidomethyl (C) _LTMC(Carbamidomethyl (C))VFTC(Carbamidomethyl (C))T_ ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion 21.74664581756881 0.17247014374749275 2 {[YD]|[{M(Oxidation (M))|F}M]}S[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}VT{I|L} 9 -1 + 42.123 0 0 3.7229 3.7229 87.411 0 0 0 7.68184734036042 13.067132382565436 7.68184734036042 14.772365335565503 0 0.4247425010840047 1.3979400086720375 0.535666875892183 0 {[YD]|[{M(Oxidation (M))|F}M]}S[C(Carbamidomethyl (C))Q]{M(Oxidation (M))|F}VT{I|L};{I|L}T[C(Carbamidomethyl (C))C]D[{M(Oxidation (M))|F}V]K{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))G]|[NC]}VT{I|L};[C(Carbamidomethyl (C))M]VSD[{M(Oxidation (M))|F}V]K{M(Oxidation (M))|F} 3.7229;2.4173;0.86902;0.3525 -;-;-;- 932 NaN NaN 286598.6 NaN 11643 3346 14989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14992 65.827 NaN 514330 35 0 51960 0.261 + 30256 VKDASDQNFD 10 82 569.75382110188 1137.49308927056 2 569.7542724609375 MULTI HCD FTMS 0 0 0 14989 181416.375 0.7149198084540552 -2 0.05224609375 3 Unmodified _VKDASDQNFD_ ENSG00000169213|ENST00000371655|RAB3B 4.189502756095605 0.45312800054222196 2 K{I|L}[HQ]{I|L} 5 8 9.4858 0 0 0.83392 0 0 130.9318232566912 384.1527498834594 515.0845731401506 0 0 0 0 0 0.5 0 0 0.3494850021680094 K{I|L}[HQ]{I|L} 0.83392 - 69 + NaN NaN 171218.7 NaN 11644 3346 14989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14993 65.831 NaN 538020 35 0 56670 0.261 + 16494 LTDFINEQP 9 79 538.7667492235325 1075.518945513865 2 538.7671508789062 MULTI HCD FTMS 0 0 0 14989 125213.3046875 0.7539775125412782 -1 0.022735595703125 4 Unmodified _LTDFINEQP_ REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF 57.72198328787511 0.020768266150574023 2 TAAENE{M(Oxidation (M))|F}V[VP] 10 -1 + 87.583 0 0 8.1433 8.1433 91.558 0 0 0 62.48950344665481 4.259687322722812 4.259687322722812 9.164539485499262 0 2.6861818737241734 1.5228787452803376 1.0189301784845295 0 TAAENE{M(Oxidation (M))|F}V[VP];TAAEGGE{M(Oxidation (M))|F}V[VP];TAAENRR{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};TAAEGGRR{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}TV{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};T{I|L}V{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};TAARR{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}TV{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};TA[KC][HA]V{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};T{I|L}V{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.1433;7.2912;5.0645;4.2083;3.4;2.6552;2.5763;1.7095;1.4333;0.96472 -;-;-;-;-;-;-;-;-;- 330 + NaN NaN 176913.8 NaN 11645 3346 14989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14994 65.834 NaN 258680 35 0 33748 0.261 -1 VADPYVVIM 9 68 511.76491871505846 1021.5152844969169 2 511.7656555175781 MULTI HCD FTMS 0 0 0 14989 134254.015625 0.3835964304098225 26 -0.6879501342773438 5 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 36.04419817259434 0.08350412372117409 2 VV{I|L}{M(Oxidation (M))|F} 4 -1 43.047 0 0 4.2141 0 0 545.248879322892 0 545.248879322892 0 25.088643834802156 0 0 0 1.5 0 0 0 VV{I|L}{M(Oxidation (M))|F} 4.2141 + + 50 + NaN NaN 137884.9 NaN 11646 3346 14989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14996 65.839 NaN 1103500 35 0 208490 0.327 + 20119 NYIPYLTKL 9 84 562.8209988035449 1123.6274446738896 2 562.821044921875 MULTI HCD FTMS 0 0 0 14995 537304.4375 0.3715736329779422 -6 0.16011810302734375 1 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 67.83816525789305 0.009787749748478139 2 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L} 9 4 + 63.565 0 0 5.6571 5.6571 85.333 0 0 0 4.743989191121315 4.743989191121315 4.743989191121315 4.743989191121315 0 1.3807196863200843 1.6989700043360187 0 0.9634679910804405 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[YN]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}TK{I|L};[YN]{I|L}[{I|L}V]{I|L}[YN]{I|L};[YN]{I|L}[{I|L}V]{I|L}{I|L}[YN];[Y{I|L}]N[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[Y{I|L}]N[{I|L}V]{I|L}[YN]{I|L};[Y{I|L}]N[{I|L}V]{I|L}{I|L}[YN] 5.6571;5.2349;4.7394;4.1173;2.5532;1.6354;1.0133 -;+;-;-;-;-;- + 276 NaN NaN 278441.3 NaN 11647 3347 14995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14997 65.843 NaN 717260 35 0 260900 0.263 + 23214 RFQEKFFIF 9 72 421.2289136100526 1260.6649114303577 3 421.22900390625 MULTI HCD FTMS 0 0 0 14995 159073.84375 0.6118431036046348 1 -0.0228424072265625 2 Unmodified _RFQEKFFIF_ ENSG00000078043|ENST00000585916|PIAS2;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;nc|ENSG00000078043|O75928-3|PIAS2 18.1463463914782 0.20357593197100715 2 {I|L}{M(Oxidation (M))|F} 2 7 29.222 0 0 2.318 0 0 982.5018717557332 0 982.5018717557332 0 1.6857563354714244 0 0 0 0.8252574989159953 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.318 + + 75 NaN NaN 195160 NaN 11648 3347 14995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14998 65.847 NaN 375680 35 0 24228 0.261 -1 IYQFIMDRF 9 78 624.807632095184 1247.6007112571679 2 624.8076171875 MULTI HCD FTMS 0 0 0 14995 157009.9375 0.47969726755035236 26 -0.6847305297851562 3 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 35.61225514009592 0.08548698421724198 2 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F} 9 -1 + 58.184 0 0 4.6637 4.6637 84.572 0 0 0 18.179184492612137 9.889917747712644 9.889917747712644 6.682437647924218 0 1.7544321917401078 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]Q{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[YV]AA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}DR{M(Oxidation (M))|F};[Y{I|L}]Q[YE]{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}R{M(Oxidation (M))|F};[Y{I|L}]QV{[C(Carbamidomethyl (C))G]|[NC]}[KA]Y{M(Oxidation (M))|F};[YV]{I|L}Q{[C(Carbamidomethyl (C))G]|[NC]}[KA]Y{M(Oxidation (M))|F};[Y{I|L}]VQ{[C(Carbamidomethyl (C))G]|[NC]}[KA]Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[ET]|[MV]}[HT]Q{I|L}P{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]K[YE]{[ET]|[MV]}R{M(Oxidation (M))|F} 4.6637;4.1281;3.9256;2.9092;2.6496;2.1661;2.1272;1.6196;1.4356;0.9247 +;-;-;-;-;-;-;-;-;- + 280 + NaN NaN 144142.2 NaN 11649 3347 14995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 14999 65.85 NaN 165680 35 0 20269 0.264 + -1 PMAEELNL 8 50 466.7230925852177 931.4316322372355 2 466.7234191894531 MULTI HCD FTMS 0 0 0 14995 65007.71484375 0.42371635291953785 -6 0.16011810302734375 4 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.50814828952472 2 {I|L}N{I|L} 3 -1 30.005 0 0 3.2214 0 0 573.2099085325956 0 573.2099085325956 0 17.697953115119063 0 0 0 0.3807196863200844 0 0 0 {I|L}N{I|L} 3.2214 + + 27 NaN NaN 111457.8 NaN 11650 3347 14995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15000 65.854 NaN 85918 35 0 9049.1 0.261 -1 LYMTEWFMCI 10 43 451.52894423249865 1351.565003297696 3 451.5291748046875 MULTI HCD FTMS 0 0 0 14995 98258.1484375 0.6513839102871797 6 -0.1600494384765625 5 Oxidation (M) _LYM(Oxidation (M))TEWFMCI_ ENSG00000169221|ENST00000409939|TBC1D10B;ENST00000475650.1_1_16:30370373-30370970:-|nuORF 0.6976657623105312 0.47161084886498755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 93749.7 NaN 11651 3347 14995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15001 65.857 NaN 398060 35 0 66991 0.261 + 35474 YYFDSYAHF 9 60 606.7535032866539 1211.4924536401077 2 606.7538452148438 MULTI HCD FTMS 0 0 0 14995 75288.5 0.564728693799787 1 -0.0228424072265625 6 Unmodified _YYFDSYAHF_ ENSG00000111218|ENST00000382622|PRMT8;ENSG00000126457|ENST00000454376|PRMT1;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1 23.1484247019978 0.1603590852062899 2 YY{M(Oxidation (M))|F}D 4 5 41.95 0 0 3.4627 0 0 0 620.2459810846311 620.2459810846311 36.46591250700361 0 0 0 0 0.9247425010840047 2 0 0 + YY{M(Oxidation (M))|F}D 3.4627 + + 46 + NaN NaN 169570.8 NaN 11652 3347 14995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15003 65.862 NaN 1056300 35 0 111990 0.327 + 15576 LPDTILEKL 9 98 521.3130810613759 1040.6116091895517 2 521.3133544921875 MULTI HCD FTMS 0 0 0 15002 246965.15625 0.5434689322835972 2 -0.0655364990234375 1 Unmodified _LPDTILEKL_ ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7 103.82355648334675 0.003950725192926219 2 {I|L}PDT{I|L}{I|L}EK{I|L} 9 0 + 83.239 0 0 7.999 7.999 89.843 0 0 0 19.42323921596858 5.955364353722018 5.955364353722018 5.955364353722018 0 2.635151878060192 1.3979400086720375 0.9876954943324545 0 + + {I|L}PDT{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}{I|L}EK{I|L};[{I|L}P]ES{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}E{I|L}K{I|L};{I|L}PDT{I|L}{I|L}{[VA]|[{I|L}G]}S{I|L};[DP]{I|L}T{I|L}{I|L}EK{I|L};[{I|L}P]DT{I|L}{I|L}[SG]{I|L}{I|L};[{I|L}P]DT{I|L}{I|L}T[VG]{I|L};[{I|L}P]ES{I|L}E{I|L}K{I|L};[DP]T{I|L}{I|L}{I|L}EK{I|L} 7.999;7.4267;6.5369;6.0533;6.0217;5.462;5.2616;5.2124;5.1635;4.8657 +;+;-;-;-;-;-;-;-;- + 1154 + NaN NaN 249985.6 NaN 11653 3348 15002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15004 65.866 NaN 678790 35 0 169060 0.261 + 23198 RFLNDPGHLLW 11 69 456.57865725541933 1366.714142366458 3 456.57867431640625 MULTI HCD FTMS 0 0 0 15002 173579.078125 0.049105124685046436 28 -0.731170654296875 2 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 33.82136114134338 0.17674243982743054 2 {I|L}W 2 9 28.583 0 0 2.0914 0 0 1049.5403418245292 0 1049.5403418245292 0 17.897131498072127 0 0 0 0.7614393726401688 0 0 0 + {I|L}W 2.0914 + + 73 NaN NaN 188893 NaN 11654 3348 15002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15005 65.87 NaN 172740 35 0 22451 0.261 + 15794 LPHLEAVVI 9 50 495.8026687868586 989.5907846405172 2 495.8028869628906 MULTI HCD FTMS 0 0 0 15002 60820.7734375 0.47806719848296947 2 -0.0655364990234375 3 Unmodified _LPHLEAVVI_ ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-12|APTX;nc|ENSG00000137074|Q7Z2E3-13|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3|APTX 10.823927491677226 0.26684000660059787 2 AVV{I|L} 4 5 28.532 0 0 2.8832 0 0 589.326463767775 0 589.326463767775 0 17.562893943202624 0 0 0 0.5 0 0 0 + AVV{I|L} 2.8832 + + 89 NaN NaN 125624.4 NaN 11655 3348 15002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15006 65.873 NaN 116540 35 0 6931.7 0.261 + -1 YLMDELTLYF 10 53 441.87797429523505 1322.6120934859052 3 441.8777770996094 MULTI HCD FTMS 0 0 0 15002 44447.66015625 0.5915476372928367 1 -0.0227813720703125 4 Oxidation (M) _YLM(Oxidation (M))DELTLYF_ REV__ENSG00000130559|ENST00000389532|CAMSAP1;REV__ENST00000492174.1_1_9:138741977-138754403:-|nuORF;REV__nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;REV__nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 4.189502756095605 0.45312800054222196 2 Y{M(Oxidation (M))|F} 2 -1 16.454 0 0 1.244 0 0 994.4752354310209 0 994.4752354310209 0 6.264100213633766 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.244 + + 11 + NaN NaN 104331.6 NaN 11656 3348 15002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15007 65.876 NaN 159000 35 0 9166.5 0.261 + 7947 GEAAWNNMQVF 11 45 633.7839050209815 1265.5532571087629 2 634.2862548828125 MULTI HCD FTMS 0 0 0 15002 38199.45703125 0.5330016378565609 1 -0.0227813720703125 5 Unmodified _GEAAWNNMQVF_ ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000164574|Q86SR1-4|GALNT10 10.799506525563784 0.36298595732910816 2 WY{M(Oxidation (M))|F} 3 9 30.93 0 0 2.444 0 0 751.3322010724625 0 751.3322010724625 0 18.940162615404077 0 0 0 0.9247425010840047 0 0 0 WY{M(Oxidation (M))|F} 2.444 - 14 NaN NaN 136646.7 NaN 11657 3348 15002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15008 65.88 NaN 397710 35 0 54816 0.261 -1 EDMLLGMDEA 10 65 578.2294808714687 NaN 0 578.2296752929688 PEAK HCD FTMS 0 0 0 15002 31437.498046875 0.4740944871314089 1 -0.0227813720703125 6 2 Oxidation (M) _EDM(Oxidation (M))LLGM(Oxidation (M))DEA_ ENSG00000154222|ENST00000284376|CC2D1B;ENST00000491136.6_1_1:52826785-52830292:-|nuORF;nc|ENSG00000154222|Q5T0F9-5|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B 3.5964929083625545 0.337106189561315 2 KAE 3 -1 6.0308 0 0 0.5224 0 0 131.9804877800314 691.2701510065061 823.2506387865376 0 0 0 0 0 0 0 0 0 KAE 0.5224 - 36 + NaN NaN 170183.3 NaN 11658 3348 15002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15010 65.885 NaN 2195000 35 0 335700 0.327 + 2167 DICCQHLATL 10 111 558.7626517994513 1115.5107506657025 2 558.7627563476562 MULTI HCD FTMS 0 0 0 15009 1800415.625 0.4620490584106269 2 -0.0555419921875 1 Unmodified _DICCQHLATL_ REV__ENSG00000101445|ENST00000299824|PPP1R16B;REV__ENSG00000160972|ENST00000435887|PPP1R16A;REV__ENST00000526183.5_1_8:145724106-145726142:+|nuORF;REV__ENST00000532806.1_1_8:145722766-145725943:+|nuORF;REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B 34.40172386719151 0.19398797222092762 2 TAAENE{M(Oxidation (M))|F}V 8 -1 72.897 0 0 6.5349 0 0 0 251.10117115528953 251.10117115528953 16.979698414709773 0 0 0 0 2.700061205686631 0 0.6505149978319906 0.3252574989159953 TAAENE{M(Oxidation (M))|F}V 6.5349 - 4238 + NaN NaN 433992.6 NaN 11659 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15011 65.889 NaN 1218600 35 0 54575 0.261 + 6345 FPFYYEIKM 9 95 627.2987934101918 1252.5830338871835 2 627.2992553710938 MULTI HCD FTMS 0 0 0 15009 659973.75 0.4788754903227024 3 -0.0949249267578125 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 86.33184430468982 0.004622086694044132 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 68.171 0 0 5.4424 5.4424 84.061 0 0 0 2.385606273598313 2.385606273598313 2.385606273598313 2.385606273598313 0 2.190614065464281 0 0.5629529932484498 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYYEP{M(Oxidation (M))|F};{M(Oxidation (M))|F}PV[DG]CVE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC{[HG]|PP}R{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC[DG]VPE;{M(Oxidation (M))|F}PV[C(Carbamidomethyl (C))D]VE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKVC[VS]V[DP] 5.4424;5.2519;5.1943;5.0355;5.0289;4.0917;3.974;3.9012;3.807;3.7184 +;-;+;-;-;-;-;-;-;- + 4583 + NaN NaN 281354.6 NaN 11660 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15012 65.893 NaN 1496600 35 0 183350 0.261 + 5200 FFDAELSQM 9 99 552.2391290246032 1102.4637051160064 2 552.2386474609375 MULTI HCD FTMS 0 0 0 15009 620769.5 0.17242615351070287 33 -0.8360595703125 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 171.0860797660465 3.235337749433058E-09 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} + + 92.859 2.8432 0.96662 8.4229 8.4229 68.029 0 0 0 0 64.67591562192516 0 0 0 3.048455006504028 0 1.7134679910804405 0.7059771852360797 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 8.4229 + + 1744 + NaN NaN 325433.9 NaN 11661 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15013 65.896 NaN 851660 35 0 128540 0.461 + 25639 SGVYEPFVTI 10 84 556.2851534420549 NaN 0 556.2849731445312 PEAK HCD FTMS 0 0 0 15009 56827.19140625 0.2880920688305005 2 -0.0555419921875 4 Unmodified _SGVYEPFVTI_ REV__HSPA13|p.S143F|1|0.09|ENSG00000155304|chr21:14378351-14378351|G/A|missense_variant 19.256988751693697 0.2866536677172102 2 TV{M(Oxidation (M))|F}EN 5 -1 50.235 0 0 4.5234 0 0 148.1218581723454 369.14134059385185 517.2631987661973 0 0 0 0 0 0 0 1.1237125054200234 1.555462187404089 TV{M(Oxidation (M))|F}EN 4.5234 - 206 + NaN NaN 217491.1 NaN 11662 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15014 65.903 NaN 361320 35 0 56924 0.261 + 13894 KYQELQVLF 9 76 584.323897458298 1166.633241983396 2 584.3236694335938 MULTI HCD FTMS 0 0 0 15009 59889.140625 0.09286184576808414 17 -0.46240997314453125 5 Unmodified _KYQELQVLF_ ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF 27.628801355627647 0.12213550946336599 2 QV{I|L}{M(Oxidation (M))|F} 4 5 46.107 0 0 3.9521 0 0 661.3431263654312 0 661.3431263654312 0 38.14810195828605 0 0 0 1.2302046884880937 0 0 0.6382104921644451 + QV{I|L}{M(Oxidation (M))|F} 3.9521 + + 291 NaN NaN 147119.9 NaN 11663 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15015 65.906 NaN 102990 35 0 20633 0.264 + 20574 PEGLDVQL 8 45 435.73173986705217 869.4489268009044 2 435.73193359375 MULTI HCD FTMS 0 0 0 15009 17718.447265625 0.08971243627064568 2 -0.0555419921875 6 Unmodified _PEGLDVQL_ REV__ENSG00000126461|ENST00000360565|SCAF1;REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant 21.74664581756881 0.4337896562907935 2 DVQ{I|L} 4 -1 37.423 0 0 4.3042 0 0 396.2002125470719 0 396.2002125470719 0 36.70941280735775 0 0 0 1 0 0 0 DVQ{I|L} 4.3042 + + 23 NaN NaN 120084.7 NaN 11664 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15016 65.909 NaN 187010 35 0 5635.1 0.261 + 6529 FPISREAFQAL 11 55 639.8455826359635 1277.676612338727 2 639.8443603515625 MULTI HCD FTMS 0 0 0 15009 43434.6171875 0.2718628151776414 3 -0.0949249267578125 7 Unmodified _FPISREAFQAL_ ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1;nc|ENSG00000151239|Q12792-4|TWF1 7.477065608646677 0.3861287967437539 2 {M(Oxidation (M))|F}QA{I|L} 4 7 31.938 0 0 2.4997 0 0 800.4192982404312 0 800.4192982404312 0 24.948500216800937 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}QA{I|L} 2.4997 + + 27 NaN NaN 116665.4 NaN 11665 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15017 65.913 NaN 188370 35 0 26074 0.262 + 28102 TIAEIKNLF 9 57 524.8053500955941 1047.5961472579882 2 524.8054809570312 MULTI HCD FTMS 0 0 0 15009 92186.1953125 0.7303419794256039 -2 0.045623779296875 8 Unmodified _TIAEIKNLF_ ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF 45.69961567697781 0.039180348357221985 2 [{I|L}T]AE 4 5 41.682 0 0 3.9789 0 0 0 630.3605384725438 630.3605384725438 17.971062485323515 0 0 0 0 0.8494850021680094 2 0 0 + [{I|L}T]AE 3.9789 + + 9 + NaN NaN 128459.3 NaN 11666 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15018 65.916 NaN 116070 35 0 13500 0.261 -1 LPDMEVVGL 9 49 494.75468566109913 NaN 0 494.7544860839844 PEAK HCD FTMS 0 0 0 15009 34811.09375 0.4240950544293169 1 -0.042755126953125 9 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 11.640296217721598 0.23883959125015683 2 GV 2 -1 19.464 0 0 1.971 0 0 131.09553967981702 697.2851406771874 828.3806803570044 0 0 0 0 0 1 0 0 0 GV 1.971 - 5 + NaN NaN 106984 NaN 11667 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15019 65.919 NaN 172430 35 0 40082 0.261 -1 CECGPGMQ 8 32 449.1489562988281 NaN 0 449.1489562988281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))ECGPGM(Oxidation (M))Q_ ENSG00000167992|ENST00000335613|VWCE;nc|ENSG00000167992|Q96DN2-2|VWCE 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114907.7 NaN 11668 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15020 65.922 NaN 165690 35 0 8051.8 0.261 + 7948 GEAAWNNMQVF 11 47 633.7839050209815 1265.5532571087629 2 633.7817993164062 MULTI HCD FTMS 0 0 0 15009 53850.2890625 0.828897968941506 4 -0.1144256591796875 11 Unmodified _GEAAWNNMQVF_ ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000164574|Q86SR1-4|GALNT10 7.101721422024254 0.3877749288398915 2 TWY{M(Oxidation (M))|F} 4 9 37.467 0 0 2.9605 0 0 650.282030174025 0 650.282030174025 0 23.17532531436136 0 0 0 1.1549471895720984 0 0 0 TWY{M(Oxidation (M))|F} 2.9605 - 19 NaN NaN 118696.2 NaN 11669 3349 15009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15022 65.927 NaN 1855000 35 0 672540 0.327 + -1 PETMCFCSTI 10 88 574.2273512979058 1146.4401496626115 2 574.2275390625 MULTI HCD FTMS 0 0 0 15021 712268.25 0.3005875708694323 3 -0.0716705322265625 1 Oxidation (M) _PETM(Oxidation (M))CFCSTI_ REV__ENSG00000240303|ENST00000264990|ACAD11;REV__ENST00000469042.5_1_3:132298334-132378619:-|nuORF;REV__nc|ENSG00000240303|Q709F0-2|ACAD11;REV__nc|ENSG00000240303|Q709F0-3|ACAD11 10.073929032068715 0.4168838835836452 2 {M(Oxidation (M))|F}VT{I|L} 4 -1 30.24 0 0 2.6377 0 0 668.1602650373062 0 668.1602650373062 0 17.537144051603093 0 0 0 1.1307196863200843 0 0.2302046884880938 0 {M(Oxidation (M))|F}VT{I|L} 2.6377 - 279 NaN NaN 376199.5 NaN 11670 3350 15021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15023 65.932 NaN 764460 35 0 78888 0.261 + 18131 MPDFDLHL 8 69 502.2308257089257 1002.4470984846514 2 502.2315368652344 MULTI HCD FTMS 0 0 0 15021 301933.5625 0.27304255438681846 12 -0.2971343994140625 2 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 101.72198241140316 0.04261147255216747 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 54.065 0 0 5.3933 5.3933 89.475 0 0 0 8.82576888900239 5.092503013052934 5.092503013052934 14.006375246153908 0 2.024227503252014 0 0 0 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ] 5.3933;3.9961;1.87;0.84573 +;-;-;- + 207 + NaN NaN 218477.1 NaN 11671 3350 15021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15024 65.935 NaN 348940 35 0 35981 0.261 + 890 AYAKFYTLL 9 73 545.3032954600593 1088.5920379869185 2 545.3035888671875 MULTI HCD FTMS 0 0 0 15021 256952.859375 0.3404934341948603 4 -0.1077117919921875 3 Unmodified _AYAKFYTLL_ ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C 63.960520009940105 0.0120409805053046 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AK{M(Oxidation (M))|F}YT{I|L}{I|L} 9 0 + 95.36 0 0 8.7599 8.7599 88.974 0 0 0 25.642492736872597 84.90208487968665 25.642492736872597 1.2371250542002343 0 2.504432191740108 2 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AK{M(Oxidation (M))|F}YT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KA{M(Oxidation (M))|F}YT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[RH]KAC{I|L};[KA]YA{M(Oxidation (M))|F}YT{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[RH]CAK{I|L};[KA]Y[RH]KAC{I|L};[KA]Y[RH]CAK{I|L} 8.7599;8.6463;6.3714;5.9114;5.6367;4.0959;2.5117 +;-;-;-;-;-;- + 248 NaN NaN 150879.6 NaN 11672 3350 15021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15026 65.94 NaN 1770400 35 0 98433 0.327 + 27204 SYNNFFRMF 9 111 621.2737767427004 1240.5330005522007 2 621.2741088867188 MULTI HCD FTMS 0 0 0 15025 978372.6875 0.1771852399886594 -13 0.3330841064453125 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 108.94 0 0 8.7815 8.7815 90.874 0 0 0 80.96524095182977 0.3902036933594246 0.3902036933594246 5.854154999221464 0 2.754432191740108 2 0 1.1549471895720984 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GSN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.7815;8.3095;8.0392;8.0392;7.5673;7.3051;7.3004;6.5703;6.0286;5.917 +;+;-;-;-;-;-;-;-;- + 8866 + NaN NaN 365046.4 NaN 11673 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15027 65.945 NaN 1150800 35 0 99215 0.261 + 13239 KYMDIEFDF 9 83 612.2680462198797 1222.5215395065593 2 612.268310546875 MULTI HCD FTMS 0 0 0 15025 435652.75 0.20187214204035542 10 -0.2647857666015625 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 51.41523569358685 0.02959097413485123 2 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 56.956 0 0 4.6589 0 0 262.09519908737025 0 262.09519908737025 0 44.253282428895275 0 0 0 1.5 0 0.5994850021680094 0 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6589 - 685 NaN NaN 272570.4 NaN 11674 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15028 65.948 NaN 671050 35 0 71078 0.261 + 34383 YPEHISNIISL 11 89 643.3431590431238 1284.6717651530475 2 643.3428344726562 MULTI HCD FTMS 0 0 0 15025 137580.53125 0.16194760280173098 4 -0.11777496337890625 3 Unmodified _YPEHISNIISL_ ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 32.037481411007896 0.18823118669267547 2 N{I|L}{I|L}S{I|L} 5 6 53.954 0 0 4.1998 0 0 726.33110243965 0 726.33110243965 0 40.13119999366566 0 0 0 1 0 0.4247425010840047 0.3252574989159953 + N{I|L}{I|L}S{I|L} 4.1998 + + 345 NaN NaN 204117.6 NaN 11675 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15029 65.951 NaN 1383400 35 0 231550 0.264 + 28833 TVFDQPQE 8 86 482.2245811549735 962.4346093767471 2 482.2247009277344 MULTI HCD FTMS 0 0 0 15025 126740.671875 0.5755384540063958 4 -0.11777496337890625 4 Unmodified _TVFDQPQE_ DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;ENSG00000103423|ENST00000262375|DNAJA3;ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;nc|ENSG00000103423|Q96EY1-3|DNAJA3 96.28474662873226 0.03404298926548806 2 TAAENET 7 7 105.76 0 0 10.989 0 0 0 243.1136416070922 243.1136416070922 60.881229267248855 0 0 0 0 2.1237125054200234 1.6989700043360187 2.3754223615526 1.0994850021680094 TAAENET 10.989 - 3905 + NaN NaN 305318.2 NaN 11676 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15030 65.955 NaN 814530 35 0 136870 0.261 + 20341 NYRDTFFNL 9 84 595.2860736288309 1188.5575943244617 2 595.3012084960938 MULTI HCD FTMS 0 0 0 15025 49248.515625 0.19586805378405556 -2 0.0555419921875 5 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 17.44264345198275 0.2096557692338702 2 [YV]QYY{I|L}PD 8 8 30.583 0 0 2.5731 0 0 0 144.03061410066326 144.03061410066326 -0.5630250076728771 0 -0.5630250076728771 0 0 0 2 0.5 0 [YV]QYY{I|L}PD 2.5731 - 797 NaN NaN 215854.8 NaN 11677 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15031 65.958 NaN 551480 35 0 78074 0.261 + 19686 NWPSRPYLF 9 85 590.3006754291683 1178.5867979251366 2 590.3009643554688 MULTI HCD FTMS 0 0 0 15025 105373.2734375 0.22250272887043965 5 -0.15061187744140625 6 Unmodified _NWPSRPYLF_ ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B 32.78568957990786 0.09846250359632436 2 NW 2 7 39.949 0 0 3.3895 0 0 0 875.4415793524263 875.4415793524263 6.276362525516532 0 0 0 0 0.5 1.6989700043360187 0 0 + NW 3.3895 + + 275 + NaN NaN 189318.6 NaN 11678 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15032 65.961 NaN 530010 35 0 34387 0.261 + 19283 NLPVKQWYF 9 76 597.8188014519593 1193.6230499707185 2 597.820068359375 MULTI HCD FTMS 0 0 0 15025 96608.890625 0.4697135424342694 -2 0.0555419921875 7 Unmodified _NLPVKQWYF_ ENSG00000088035|ENST00000263440|ALG6 30.636539890814138 0.10832830463492794 2 {[QV]|[N{I|L}]|[RA]|[KV]}PV[KQ]WY{M(Oxidation (M))|F} 9 0 + 47.474 0 0 3.9773 3.9773 90.07 0 0 0 18.43326954115149 18.91781960619177 18.43326954115149 47.474338303240486 0 1.2614393726401687 2 0 0 + + {[QV]|[N{I|L}]|[RA]|[KV]}PV[KQ]WY{M(Oxidation (M))|F} 3.9773 + + 70 NaN NaN 186862 NaN 11679 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15033 65.965 NaN 273020 35 0 63272 0.261 + 31810 VYMDWYEKF 9 59 648.7838371335808 1295.5531213339616 2 648.7828369140625 MULTI HCD FTMS 0 0 0 15025 47933.37109375 0.02129677773656899 95 -2.572906494140625 8 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 45.739877483867886 0.03899552410870734 2 [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F} 9 0 + 76.283 0 0 5.8881 5.8881 91.883 0 0 0 10.84752853788089 10.84752853788089 10.84752853788089 27.3134410448845 0 2.3252574989159953 2 0 0 + + [YV]{M(Oxidation (M))|F}DWYEK{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}N{[{M(Oxidation (M))|F}C]|[YS]}[QT]K{M(Oxidation (M))|F} 5.8881;3.7798 +;- + 163 NaN NaN 131289.3 NaN 11680 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15034 65.968 NaN 360110 35 0 39445 0.262 -1 YPDTDVILM 9 66 541.7574483420049 1081.5003437508096 2 541.7575073242188 MULTI HCD FTMS 0 0 0 15025 106399.59375 0.1394650139649873 -18 0.4539794921875 9 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 30.224811164608877 0.11021837014094292 2 V{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 43.047 0 0 3.9803 0 0 591.2173980494409 0 591.2173980494409 0 13.082049329337977 0 0 0 1.5 0 0 0 V{I|L}{I|L}{M(Oxidation (M))|F} 3.9803 + + 240 + NaN NaN 148143 NaN 11681 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15035 65.971 NaN 233930 35 0 26817 0.261 -1 VADPYVVIM 9 51 511.76491871505846 1021.5152844969169 2 511.7651062011719 MULTI HCD FTMS 0 0 0 15025 53157.66015625 0.15188438565467263 31 -0.780517578125 10 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 23.1484247019978 0.1603590852062899 2 V{I|L}{M(Oxidation (M))|F} 3 -1 41.198 0 0 4.033 0 0 644.3175160878852 0 644.3175160878852 0 19.771212547196626 0 0 0 1.5 0 0 0 V{I|L}{M(Oxidation (M))|F} 4.033 + + 17 + NaN NaN 119208.2 NaN 11682 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15036 65.975 NaN 289130 35 0 17899 0.261 + 34474 YPFESAEAQL 10 66 577.7718508918884 1153.5291488505768 2 577.7718505859375 MULTI HCD FTMS 0 0 0 15025 42615.0234375 0.1931895439021892 -10 0.26128387451171875 11 Unmodified _YPFESAEAQL_ ENSG00000167325|ENST00000300738|RRM1 34.40172386719151 0.19398797222092762 2 EAQ{I|L} 4 6 42.423 0 0 3.6776 0 0 694.2963124005875 0 694.2963124005875 0 33.99411293427114 0 0 0 0.7742275032520141 0 0.2742275032520141 0 + EAQ{I|L} 3.6776 + + 30 NaN NaN 128925 NaN 11683 3351 15025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15038 65.979 NaN 15553000 35 0 2769400 0.327 + 27535 TAAENEFVTL 10 96 547.7718074841189 1093.5290620350377 2 547.7725830078125 MULTI HCD FTMS 0 0 0 15037 13067376 0.47598745705144546 5 -0.1307220458984375 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 228.36842504977758 1.5959189353506314E-32 2 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 122.08 0 0 11.164 11.164 96.905 0 0 0 15.982587709797315 16.53212513775344 15.982587709797315 15.982587709797315 0 2.9559771852360797 1.2218487496163564 1.9991348669726232 1.5189301784845295 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L};[TA]AE{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}VT{I|L};[{M(Oxidation (M))|F}V][HC]E{M(Oxidation (M))|F}VT{I|L} 11.164;9.7027;9.6193;8.9372;8.8607;8.3766;7.3923;6.1495;5.901;5.7691 +;-;-;-;-;-;-;-;+;- + 2702 NaN NaN 616954 NaN 11684 3352 15037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15039 65.984 NaN 872260 35 0 104590 0.261 -1 LTMCVFTCT 9 106 566.7450977851911 1131.475642637182 2 566.7451171875 MULTI HCD FTMS 0 0 0 15037 279017.65625 0.3999369762861518 5 -0.1307220458984375 2 2 Carbamidomethyl (C) _LTMC(Carbamidomethyl (C))VFTC(Carbamidomethyl (C))T_ ENSG00000108839|ENST00000251535|ALOX12;MINK1-ALOX12|1|fusion 15.847184025352803 0.2234401846867398 2 [YE][YE]EWT{I|L} 8 -1 + 25.549 0 0 2.258 2.258 86.223 0 0 0 5.639464874798399 2.8013681416781147 2.8013681416781147 13.02887198244135 0 0.6307196863200843 1.2218487496163564 0.5138793319624578 0 [YE][YE]EWT{I|L};[YE][YE]E[{I|L}T]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{[CP]|[EA]}G[YK][C(Carbamidomethyl (C))N] 2.258;1.1065;0.2173 -;-;- 534 + NaN NaN 233986.5 NaN 11685 3352 15037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15040 65.987 NaN 337300 35 0 27973 0.261 + 30257 VKDASDQNFD 10 72 569.75382110188 1137.49308927056 2 569.7542114257812 MULTI HCD FTMS 0 0 0 15037 168811.40625 0.6652465535214762 4 -0.11122894287109375 3 Unmodified _VKDASDQNFD_ ENSG00000169213|ENST00000371655|RAB3B 4.189502756095605 0.45312800054222196 2 W 1 10 13.495 0 0 1.1864 0 0 933.4033198387225 0 933.4033198387225 0 5.078474942632592 0 0 0 0 0 0 0 W 1.1864 - 59 + NaN NaN 145154.5 NaN 11686 3352 15037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15041 65.991 NaN 336130 35 0 27599 0.261 + 9824 HYNWLIYHL 9 67 629.82190727017 1257.6292616071398 2 629.822265625 MULTI HCD FTMS 0 0 0 15037 171039 0.09835135874700189 32 -0.8115234375 4 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 78.7280429016045 0.006263961847259105 2 {[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L} 9 2 + 83.896 0 0 6.671 6.671 86.626 0 0 0 3.6077702836060013 3.6077702836060013 3.6077702836060013 3.6077702836060013 0 1.8494850021680094 1.5228787452803376 0 1.4308845489566888 {[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}WN{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}WGG{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}YH{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}WN{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}WGG{I|L} 6.671;6.3841;5.6519;5.5518;4.8196;4.1113;2.9921;2.2599 -;+;-;-;-;-;-;- + 174 NaN NaN 155154.8 NaN 11687 3352 15037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15042 65.994 NaN 253970 35 0 63109 0.264 + 28657 TRVRTWPADL 10 64 405.5606856944088 1213.6602276834265 3 405.5611267089844 MULTI HCD FTMS 0 0 0 15037 54980.296875 0.7593031242494609 -1 0.0393829345703125 5 Unmodified _TRVRTWPADL_ REV__ENST00000332290.3_1_6:170102440-170102521:+|nuORF 11.494710602746466 0.4035943721457025 2 D{I|L} 2 -1 28.711 0 0 2.3657 0 0 967.538333715686 0 967.538333715686 0 14.107281392838829 0 0 0 0.7742275032520141 0 0 0 D{I|L} 2.3657 + + 28 NaN NaN 125526.1 NaN 11688 3352 15037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15044 65.999 NaN 2455200 35 0 563590 0.327 + 20120 NYIPYLTKL 9 86 562.8209988035449 1123.6274446738896 2 562.8211669921875 MULTI HCD FTMS 0 0 0 15043 1446024.125 1 0 0 1 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 121.34585337138759 0.001129813327125052 2 NY{I|L}PY{I|L}TK{I|L} 9 0 + 96.328 0 0 8.5729 8.5729 91.312 0 0 0 7.460762528683702 7.460762528683702 7.460762528683702 7.460762528683702 0 2.6237125054200234 1.6989700043360187 0.9559771852360797 0.75 + + NY{I|L}PY{I|L}TK{I|L};[YN]{I|L}PY{I|L}TK{I|L};[YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[Y{I|L}]NPY{I|L}TK{I|L};[YN]{I|L}[{I|L}V]{I|L}[YN]{I|L};[Y{I|L}]GGPY{I|L}TK{I|L};[Y{I|L}]N[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]PY{I|L}TK{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[Q{I|L}]{I|L}TK{I|L};[Y{I|L}]N[{I|L}V]{I|L}[YN]{I|L} 8.5729;7.9089;6.05;5.6017;5.2435;3.8429;3.7429;3.3916;3.0129;2.9363 +;+;-;-;-;-;-;-;-;- + 380 + NaN NaN 465355.9 NaN 11689 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15045 66.003 NaN 1541100 35 0 125310 0.261 + 2920 DYSPYFKTI 9 117 567.2792195549672 1132.5438861767343 2 567.2794799804688 MULTI HCD FTMS 0 0 0 15043 321568.9375 0.015294140413390705 115 -3.0986480712890625 2 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 61.60191391372663 0.015340508911304802 2 K{M(Oxidation (M))|F}YPSEM 7 8 50.487 0 0 4.4578 0 0 232.14200026679845 0 232.14200026679845 0 24.544715628259496 0 0 0 1.4731975075880328 0 0.6694451763165201 0 K{M(Oxidation (M))|F}YPSEM 4.4578 - 1284 NaN NaN 345794.6 NaN 11690 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15046 66.007 NaN 1344000 35 0 98519 0.261 + 1209 AYLLNLNHL 9 94 535.8032968581605 1069.5920407831209 2 535.8037719726562 MULTI HCD FTMS 0 0 0 15043 638659.8125 1 0 0 3 Unmodified _AYLLNLNHL_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 179.22989800431262 1.129651853483991E-12 2 AY{I|L}{I|L}N{I|L}NH{I|L} 9 0 + 98.369 0 0 9.1968 9.1968 91.752 0 0 0 79.61726067337175 6.7074145675533 6.7074145675533 6.77440017027358 0 2.7728787452803374 1.6989700043360187 0 1.3807196863200843 + + AY{I|L}{I|L}N{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}NH{I|L};AY{I|L}{I|L}GG{I|L}NH{I|L};AY{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG{I|L}NH{I|L};AY{I|L}{I|L}N[HN]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{I|L}GGH{I|L};AY{I|L}{I|L}GG[HN]{I|L}{I|L} 9.1968;8.5635;8.3359;8.0092;7.9792;7.7026;7.5821;7.2643;7.1183;6.4034 +;+;-;-;-;-;-;-;-;- + 1654 + NaN NaN 295783.2 NaN 11691 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15047 66.01 NaN 337710 35 0 39948 0.261 + 27524 TAAENEFVAL 10 61 532.7666789825668 1063.5188050319334 2 532.76708984375 MULTI HCD FTMS 0 0 0 15043 256741.09375 1 0 0 4 Unmodified _TAAENEFVAL_ CON__O95678;ENSG00000170454|ENST00000252245|KRT75 47.594388314883695 0.08653821083322558 2 HE{M(Oxidation (M))|F}VA{I|L} 6 5 52.256 0 0 4.9135 0 0 349.14244277168126 0 349.14244277168126 0 38.76078152608656 0 0 0 1.3807196863200843 0 0.7302046884880937 0 HE{M(Oxidation (M))|F}VA{I|L} 4.9135 - 101 NaN NaN 143662.8 NaN 11692 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15048 66.014 NaN 283650 35 0 23687 0.261 + 25130 SAHLFEVEL 9 68 522.7713618970199 1043.5281708608397 2 522.7717895507812 MULTI HCD FTMS 0 0 0 15043 111918.6875 0.8498112992647731 1 -0.036041259765625 5 Unmodified _SAHLFEVEL_ ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF 32.30548876998284 0.10066689432505688 2 EVE{I|L} 4 5 42.339 0 0 4.0573 0 0 555.2794056623062 0 555.2794056623062 0 27.64645333192 0 0 0 0.7302046884880937 0 0.7614393726401688 0 + EVE{I|L} 4.0573 + + 75 NaN NaN 144935.1 NaN 11693 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15049 66.017 NaN 251180 35 0 65781 0.261 + 23199 RFLNDPGHLLW 11 49 456.57865725541933 1366.714142366458 3 456.91314697265625 MULTI HCD FTMS 0 0 0 15043 52194.875 0.020962264419949923 33 -0.8488082885742188 6 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 15.538449434065043 0.3216953923945805 2 DN[{I|L}V]W 5 8 23.188 0 0 1.6966 0 0 721.3908337252009 0 721.3908337252009 0 21.593793813122062 0 0 0 1 0 0 0 DN[{I|L}V]W 1.6966 - 48 + NaN NaN 121714.3 NaN 11694 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15050 66.02 NaN 106950 35 0 10095 0.261 -1 MWGWSLCNVL 10 39 408.8563656160414 1223.5472674483242 3 408.8561096191406 MULTI HCD FTMS 0 0 0 15043 79629.8671875 1 0 0 7 Oxidation (M) _M(Oxidation (M))WGWSLCNVL_ ENST00000291295.13_1_19:47113260-47113362:+|nuORF 3.3196427980023873 0.4577323075863651 2 {I|L}G 2 -1 13.583 0 0 1.1102 0 0 663.2398325780684 387.1783541315063 1050.4181867095747 0 0 0 0 0 0.5 0 0 0 {I|L}G 1.1102 - 21 + NaN NaN 99848.2 NaN 11695 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15051 66.024 NaN 371880 35 0 97007 0.261 + 10950 IYDGKRHLIF 10 65 421.24129550171506 1260.7020571053451 3 421.5630187988281 MULTI HCD FTMS 0 0 0 15043 18080.48046875 1 0 0 8 Unmodified _IYDGKRHLIF_ ENSG00000120289|ENST00000378982|MAGEB4 7.289230182591677 0.43672065049472153 2 [Y{I|L}]D 3 7 19.666 0 0 1.5599 0 0 0 866.5055158003171 866.5055158003171 2.676062401770313 0 0 0 0 0 1.5228787452803376 0 0 + [Y{I|L}]D 1.5599 + + 25 NaN NaN 148649.1 NaN 11696 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15052 66.027 NaN 253080 35 0 32663 0.261 -1 VADPYVVIM 9 53 511.76491871505846 1021.5152844969169 2 511.7646179199219 MULTI HCD FTMS 0 0 0 15043 59566.69140625 0.17019654934258843 33 -0.8488082885742188 9 Oxidation (M) _VADPYVVIM(Oxidation (M))_ ENSG00000071894|ENST00000616140|CPSF1 23.1484247019978 0.1603590852062899 2 V{I|L}{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.9593 0 0 644.3168175402801 0 644.3168175402801 0 25.496812376923046 0 0 0 1.4247425010840047 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.9593 + + 25 NaN NaN 142783.8 NaN 11697 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15053 66.03 NaN 286600 35 0 83538 0.261 + -1 CHNCDCDCGC 10 51 448.1165455144083 NaN 0 448.1168212890625 PEAK HCD FTMS 0 0 0 15043 37436.16015625 0.36380097097034625 8 -0.205902099609375 10 Acetyl (Protein N-term),4 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))HNC(Carbamidomethyl (C))DC(Carbamidomethyl (C))DC(Carbamidomethyl (C))GC_ REV__ENST00000451025.6_2_6:43608345-43608465:+|nuORF 0 0.34018428902965525 2 Y 1 -1 4.6041 0 0 0.51487 0 0 130.81974766768536 597.3162935846311 728.1360412523165 0 0 0 0 0 0 0 0 0 Y 0.51487 - 1 + NaN NaN 138912 NaN 11698 3353 15043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15055 66.035 NaN 1798300 35 0 261840 0.326 + 32873 WYGQCFLSL 9 112 558.7626517994513 1115.5107506657025 2 558.7630004882812 MULTI HCD FTMS 0 0 0 15054 678136.0625 0.17403322033067506 7 -0.16986083984375 1 Unmodified _WYGQCFLSL_ REV__ENST00000007708.7_1_17:48187616-48187931:+|nuORF 32.30548876998284 0.10066689432505688 2 TAAENE{M(Oxidation (M))|F}V 8 -1 68.827 0 0 6.17 0 0 0 251.10119573085453 251.10119573085453 12.16464609660951 0 0 0 0 2.3169015600442577 0 0.5941876774005248 0.23965182871044374 TAAENE{M(Oxidation (M))|F}V 6.17 - 3464 + NaN NaN 363301 NaN 11699 3354 15054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15056 66.04 NaN 702050 35 0 33790 0.261 + 6346 FPFYYEIKM 9 85 627.2987934101918 1252.5830338871835 2 627.2993774414062 MULTI HCD FTMS 0 0 0 15054 293525 0.21298108947056033 8 -0.189422607421875 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 67.83816525789305 0.009787749748478139 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 67.903 0 0 5.421 5.421 83.941 0 0 0 3.394192071636951 2.2013889348377944 2.2013889348377944 2.2013889348377944 0 2.579689690656103 1.6989700043360187 0.3054621874040891 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYT{I|L}[VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[HG]|PP}R{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[RV][C(Carbamidomethyl (C))H]K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DG]VPE 5.421;5.2453;5.15;5.0254;4.5586;3.3215;3.1809;3.1343;3.1218;3.0887 +;-;+;-;-;-;-;-;-;- + 2576 NaN NaN 188139.4 NaN 11700 3354 15054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15057 66.043 NaN 310270 35 0 38875 0.261 + -1 LESHLCTLLSL 11 64 643.3431590431238 1284.6717651530475 2 643.3447265625 MULTI HCD FTMS 0 0 0 15054 99978.796875 0.11768617505543642 7 -0.16986083984375 3 Carbamidomethyl (C) _LESHLC(Carbamidomethyl (C))TLLSL_ REV__ENST00000379477.5_1_13:41835935-41837507:-|nuORF;REV__ENST00000498245.1_1_13:41835952-41837531:-|nuORF 20.41453444215458 0.279209903849948 2 C{I|L}{I|L}S{I|L} 5 -1 50.701 0 0 3.9466 0 0 737.3535014939752 0 737.3535014939752 0 43.7113751626007 0 0 0 0.9247425010840047 0 0.3494850021680094 0 C{I|L}{I|L}S{I|L} 3.9466 - 61 NaN NaN 132441.4 NaN 11701 3354 15054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15058 66.046 NaN 391390 35 0 67353 0.261 + 35800 YYPEHFTLL 9 75 591.7949992847066 1181.575445636213 2 591.7953491210938 MULTI HCD FTMS 0 0 0 15054 140136.078125 0.7072331823221768 -5 0.1504669189453125 4 Unmodified _YYPEHFTLL_ ENSG00000100065|ENST00000251973|CARD10 54.773552608820026 0.024892918755467567 2 T{I|L}{I|L} 3 6 31.22 0 0 2.6422 0 0 836.34965712715 0 836.34965712715 0 0.009672498885997527 0 0 0 0.5 0 0.4247425010840047 0 + T{I|L}{I|L} 2.6422 + + 80 NaN NaN 162858.7 NaN 11702 3354 15054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15059 66.05 NaN 153720 35 0 12602 0.263 + -1 PMAEELNL 8 52 466.7230925852177 931.4316322372355 2 466.7229919433594 MULTI HCD FTMS 0 0 0 15054 47369.23828125 0.3087498296679089 1 -0.02285003662109375 5 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.50814828952472 2 {I|L}N{I|L} 3 -1 30.445 0 0 3.2687 0 0 573.2096424787125 0 573.2096424787125 0 22.998037644757048 0 0 0 0.4247425010840047 0 0 0 {I|L}N{I|L} 3.2687 + + 16 NaN NaN 108357.2 NaN 11703 3354 15054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15060 66.053 NaN 354670 35 0 27126 0.261 + 16495 LTDFINEQP 9 67 538.7667492235325 1075.518945513865 2 538.7666625976562 MULTI HCD FTMS 0 0 0 15054 63555.4453125 0.3827019555530968 7 -0.16986083984375 6 Unmodified _LTDFINEQP_ REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF 31.26834338654808 0.10542797264966089 2 EA[PG] 4 -1 24.227 0 0 2.2526 0 0 703.3551502912125 0 703.3551502912125 0 -0.19795311511906277 -0.19795311511906277 0 0 0.9247425010840047 0 0.6307196863200843 0 EA[PG] 2.2526 - 138 NaN NaN 142005.6 NaN 11704 3354 15054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15062 66.058 NaN 1208700 35 0 105710 0.327 + 1457 AYSPRFLYI 9 99 565.3055500431743 1128.5965471531485 2 565.3054809570312 MULTI HCD FTMS 0 0 0 15061 586423 0.6131230928463044 -4 0.11777496337890625 1 Unmodified _AYSPRFLYI_ ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 75.76082778847304 0.0072241045649327805 2 AYSP[R{M(Oxidation (M))|F}]{I|L}Y{I|L} 9 0 + 60.396 0 0 5.3515 5.3515 92.317 0 0 0 24.594465368295886 9.678024757013262 9.678024757013262 60.3964467209417 0 2.1237125054200234 2 0.3807196863200844 0 + + AYSP[R{M(Oxidation (M))|F}]{I|L}Y{I|L} 5.3515 + + 433 + NaN NaN 275995.9 NaN 11705 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15063 66.062 NaN 1411900 35 0 163490 0.261 + 5201 FFDAELSQM 9 110 552.2391290246032 1102.4637051160064 2 552.2391967773438 MULTI HCD FTMS 0 0 0 15061 354788.875 0.09854685358194881 39 -1.0157241821289062 2 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 157.7952019732125 5.857147217999733E-07 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D + + 82.124 5.4318 1.3275 7.4491 7.4491 66.47 0 0 0 0 66.75172223816826 0 0 0 2.6307196863200843 0 1.2179001828205482 0.6382104921644451 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 7.4491 + + 3139 + NaN NaN 300024 NaN 11706 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15064 66.066 NaN 1659400 35 0 452480 0.261 -1 KYMDVQFDF 9 96 604.7681072670384 1207.5216616008768 2 604.7683715820312 MULTI HCD FTMS 0 0 0 15061 297436.75 0.08683149524029377 35 -0.9046554565429688 3 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 57.24910588100465 0.021429789259086996 2 C(Carbamidomethyl (C))D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 62.265 0 0 5.1564 0 0 278.16313368965 0 278.16313368965 0 48.241129746667646 0 0 0 1.805462187404089 0 0 1 C(Carbamidomethyl (C))D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.1564 - 1038 NaN NaN 361340.4 NaN 11707 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15065 66.069 NaN 1517100 35 0 116190 0.261 -1 DFLQVCNDTL 10 105 612.7808544138982 1223.5471558945962 2 612.7808837890625 MULTI HCD FTMS 0 0 0 15061 155355.671875 0.3770399816765502 2 -0.05233001708984375 4 Carbamidomethyl (C) _DFLQVC(Carbamidomethyl (C))NDTL_ CCDC73|p.T895Lfs*8|1|0.12|ENSG00000186714|chr11:32613635-32613635|T/-|frameshift_variant;ENSG00000186714|ENST00000335185|CCDC73 16.149105407346934 0.3600587335443843 2 D{[SA]|[TG]}D{I|L}E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 9 -1 31.577 0 0 2.5808 0 0 166.1059996498646 0 166.1059996498646 0 -4.629391365497856 -4.629391365497856 0 0 0 0 1.0484550065040281 0 D{[SA]|[TG]}D{I|L}E{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.5808 - 1123 + NaN NaN 326332.9 NaN 11708 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15066 66.073 NaN 341030 35 0 35986 0.262 + 29989 VFIVSFISI 9 69 512.8083554127695 NaN 0 512.7948608398438 PEAK HCD FTMS 0 0 0 15061 7506.8662109375 0.3804180275946711 -3 0.07839202880859375 5 Unmodified _VFIVSFISI_ tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 4.3292370932331545 0.2742679634796037 2 AE{M(Oxidation (M))|F} 3 8 19.085 0 0 1.8645 0 0 131.12255739852827 542.3086227472824 673.4311801458107 0 0 0 0 0 0 0 0.28872548999643577 0 AE{M(Oxidation (M))|F} 1.8645 - 74 + NaN NaN 154248.8 NaN 11709 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15067 66.076 NaN 254630 35 0 60584 0.262 -1 0 46 403.5642445128341 1207.6709041387023 3 403.8985290527344 MULTI HCD FTMS 0 0 0 15061 4825.201171875 0.06875600240146154 -6 0.17331695556640625 6 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5644 0 0 929.5083263603004 0 929.5083263603004 0 25.48455006504028 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5644 - 9 + NaN NaN 135380.1 NaN 11710 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15068 66.079 NaN 107720 35 0 5038.6 0.261 -1 NPCPVPFVIPE 11 44 634.8213974687836 NaN 0 635.2330932617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))PVPFVIPE_ ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-3|SVEP1 1.1933415558491238 0.338734977139133 2 G 1 -1 2.7642 0 0 0.21806 0 0 602.718709388936 604.8801363580686 1207.5988457470046 0 0 0 0 0 0 0 0 0 G 0.21806 - 1 + NaN NaN 107246.1 NaN 11711 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15069 66.083 NaN 226020 35 0 59444 0.264 + 9950 IDYWQMIFF 9 50 421.5348550460272 1261.5827357382816 3 421.5351867675781 MULTI HCD FTMS 0 0 0 15061 6907.34619140625 0.08655628241613082 4 -0.09796905517578125 8 Unmodified _IDYWQMIFF_ ENSG00000118322|ENST00000327245|ATP10B 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.3467 0 0 1096.5038915994128 0 1096.5038915994128 0 16.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3467 + + 3 + NaN NaN 135484.3 NaN 11712 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15070 66.086 NaN 214710 35 0 55601 0.261 + 33689 YKQQYLVI 8 45 527.8001685095187 1053.5857840858373 2 527.8011474609375 MULTI HCD FTMS 0 0 0 15061 46035.48046875 0.1042975915983939 -9 0.23834228515625 9 Unmodified _YKQQYLVI_ REV__ENST00000565288.1_1_15:52844133-52849247:-|nuORF 9.347437153973935 0.5250182646323369 2 V{I|L} 2 -1 25.969 0 0 2.4648 0 0 823.4229340346254 0 823.4229340346254 0 12.156818820794939 0 0 0 0.5 0 0 0 V{I|L} 2.4648 + + 17 NaN NaN 121479 NaN 11713 3355 15061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15072 66.091 NaN 5041800 35 0 292880 0.327 + 27205 SYNNFFRMF 9 131 621.2737767427004 1240.5330005522007 2 621.274169921875 MULTI HCD FTMS 0 0 0 15071 3285223.25 0.5949604658884895 -8 0.22893524169921875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 208.14542850568068 7.55743023528371E-18 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 117.23 0 0 9.4504 0 0 0 208.03644739322502 208.03644739322502 77.09105848590866 0 0 0 0 2.5356668758921828 2 1.360924374808178 1.2658715643802767 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.4504 - 13885 + NaN NaN 854229.2 NaN 11714 3356 15071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15073 66.095 NaN 644490 35 0 224630 0.261 + -1 EWQEQCGPN 9 65 574.2273512979058 1146.4401496626115 2 574.2276000976562 MULTI HCD FTMS 0 0 0 15071 227871.453125 0.09616507062519136 9 -0.228912353515625 2 Carbamidomethyl (C) _EWQEQC(Carbamidomethyl (C))GPN_ REV__nc|ENSG00000223806|Q6XXX2|LINC00114 3.944395688203298 0.32111559684428237 2 EN 2 -1 11.454 0 0 0.99906 0 0 885.3384821548523 0 885.3384821548523 0 0.5115252244738127 0 0 0 0 0 0 0 EN 0.99906 - 27 NaN NaN 186381.9 NaN 11715 3356 15071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15074 66.099 NaN 489150 35 0 45113 0.261 + 18132 MPDFDLHL 8 66 502.2308257089257 1002.4470984846514 2 502.2315979003906 MULTI HCD FTMS 0 0 0 15071 201165.796875 0.18191691767956356 18 -0.46276092529296875 3 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 101.72198241140316 0.04261147255216747 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 55.539 0 0 5.5403 5.5403 84.294 0 0 0 2.6793810893175163 2.6793810893175163 2.6793810893175163 2.6793810893175163 0 2.004432191740108 0 1.610924374808178 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L};{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[TP][YE]H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[TP]D[WQ]{I|L};{I|L}[YE][KQ][YC(Carbamidomethyl (C))] 5.5403;5.2731;3.5711;2.1194;2.0106;1.2809;0.047331 +;+;-;-;-;-;- + 150 NaN NaN 163804.5 NaN 11716 3356 15071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15075 66.102 NaN 586510 35 0 49015 0.261 + 13240 KYMDIEFDF 9 82 612.2680462198797 1222.5215395065593 2 612.2685546875 MULTI HCD FTMS 0 0 0 15071 200865.953125 0.0930769752292884 15 -0.39055633544921875 4 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 41.95555342248728 0.056367691549927025 2 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 51.419 0 0 4.206 0 0 262.09468276191564 0 262.09468276191564 0 36.72630726946174 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.206 - 702 NaN NaN 178154.5 NaN 11717 3356 15071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15076 66.105 NaN 128750 35 0 23362 0.262 -1 TAMDVVYAL 9 48 499.74673630115075 997.4789196691015 2 499.7464904785156 MULTI HCD FTMS 0 0 0 15071 13225.6826171875 0.01620519138790607 -27 0.692718505859375 5 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 15.847184025352803 0.2234401846867398 2 VYA{I|L} 4 -1 32.155 0 0 3.2236 0 0 533.21489150215 0 533.21489150215 0 19.39051555779283 0 0 0 0.9247425010840047 0 0 0 VYA{I|L} 3.2236 + + 17 NaN NaN 112831.9 NaN 11718 3356 15071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15078 66.11 NaN 5844900 35 0 1007800 0.327 + 27536 TAAENEFVTL 10 88 547.7718074841189 1093.5290620350377 2 547.7722778320312 MULTI HCD FTMS 0 0 0 15077 4056763.25 0.1477701738457099 10 -0.2662506103515625 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 187.1423235319798 2.3722378751884736E-16 2 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 115.71 0 0 10.582 10.582 96.6 0 0 0 14.947799724295606 16.53212513775344 14.947799724295606 14.947799724295606 0 2.899649864804614 1.154901959985743 1.624803706770636 1.555462187404089 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L};[{I|L}T]V{[QD]|[EN]|[WG]|[KD]|[RS]}CCVT{I|L};[TA]AE{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}VT{I|L} 10.582;9.2147;8.8741;8.3726;8.3211;7.8598;6.6136;5.5994;5.5778;5.4426 +;-;-;-;-;-;-;-;-;+ + 2301 NaN NaN 455179.4 NaN 11719 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15079 66.115 NaN 1960100 35 0 405440 0.261 + 20342 NYRDTFFNL 9 95 595.2860736288309 1188.5575943244617 2 595.302001953125 MULTI HCD FTMS 0 0 0 15077 230500.671875 0.9167325638776233 4 -0.0946807861328125 2 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 61.60191391372663 0.015340508911304802 2 [YV]P{I|L}MKEY{M(Oxidation (M))|F} 9 8 + 52.853 0 0 4.4468 4.4468 83.76 0 0 0 5.463921455228153 5.463921455228153 5.463921455228153 5.463921455228153 0 0 2 0 0 [YV]P{I|L}MKEY{M(Oxidation (M))|F};[YN]R{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{I|L};[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}VY{M(Oxidation (M))|F};[YN]R{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}GG{I|L};[YN]R{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};[{I|L}P][YV]MKEY{M(Oxidation (M))|F};[YV]P{M(Oxidation (M))|F}GVVVY{M(Oxidation (M))|F};[{I|L}P][YV]M[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]M{[SA]|[TG]}VY{M(Oxidation (M))|F} 4.4468;3.9871;3.9291;3.6721;3.2124;3.154;2.9996;2.5822;2.4818;2.2248 -;+;-;-;-;-;-;-;-;- + 1116 NaN NaN 388716.2 NaN 11720 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15080 66.118 NaN 896990 35 0 124660 0.261 + 34318 YPDTDVILM 9 70 541.7574483420049 1081.5003437508096 2 541.7577514648438 MULTI HCD FTMS 0 0 0 15077 251145.0625 0.32919251300054997 -12 0.31340789794921875 3 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 63.562846038646086 0.012597299157545023 2 YV{I|L}{I|L}{M(Oxidation (M))|F} 5 4 52.206 0 0 4.8272 0 0 428.15532118965 0 428.15532118965 0 23.892849671631424 0 0 0 1.9247425010840047 0 0 0 YV{I|L}{I|L}{M(Oxidation (M))|F} 4.8272 - 345 NaN NaN 232262.8 NaN 11721 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15081 66.122 NaN 448490 35 0 43328 0.261 + 34475 YPFESAEAQL 10 70 577.7718508918884 1153.5291488505768 2 577.7719116210938 MULTI HCD FTMS 0 0 0 15077 165560.65625 0.7505472269889475 -4 0.1112213134765625 4 Unmodified _YPFESAEAQL_ ENSG00000167325|ENST00000300738|RRM1 70.33199760932243 0.017191949488996158 2 ESAEAQ{I|L} 7 3 66.49 0 0 5.7641 0 0 407.1845875470719 0 407.1845875470719 0 54.650866222830956 0 0 0 1.805462187404089 0 0.6989700043360187 0 + ESAEAQ{I|L} 5.7641 + + 384 NaN NaN 178775.7 NaN 11722 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15082 66.125 NaN 438840 35 0 47138 0.261 + 5761 FPAGYMYPSM 10 71 590.2460169250976 1178.477480916995 2 590.2466430664062 MULTI HCD FTMS 0 0 0 15077 67573.90625 0.33942148294616464 -12 0.31340789794921875 5 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 46.020951573049366 0.09315764076686055 2 {M(Oxidation (M))|F}YPSM 5 5 37.945 0 0 3.2199 0 0 535.2443819942109 0 535.2443819942109 0 18.151668842475033 0 0 0 1.524227503252014 0 0.3494850021680094 0 + {M(Oxidation (M))|F}YPSM 3.2199 + + 344 NaN NaN 164874.6 NaN 11723 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15083 66.128 NaN 292690 35 0 26698 0.261 + 22296 QPELPEVIAM 10 76 571.7911935373255 1141.567834141451 2 571.79150390625 MULTI HCD FTMS 0 0 0 15077 130845.9765625 0.7558518627766803 -4 0.1112213134765625 6 Oxidation (M) _QPELPEVIAM(Oxidation (M))_ CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;TMX2-CTNND1|1|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion 45.69961567697781 0.09594615698576985 2 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 8 6 54.588 0 0 4.7819 0 0 165.04673348519503 0 165.04673348519503 0 35.510051759998035 0 0 0 0 0 1.0189301784845295 0.3252574989159953 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 4.7819 - 501 + NaN NaN 137846 NaN 11724 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15084 66.132 NaN 224380 35 0 54999 0.264 -1 0 45 403.5642445128341 1207.6709041387023 3 403.5640563964844 MULTI HCD FTMS 0 0 0 15077 23432.2265625 0.325657027908465 -2 0.05233001708984375 7 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5644 0 0 929.5078620017867 0 929.5078620017867 0 27.47425010840047 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5644 - 12 + NaN NaN 128479.5 NaN 11725 3357 15077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15086 66.136 NaN 686410 35 0 144120 0.327 + 20121 NYIPYLTKL 9 72 562.8209988035449 1123.6274446738896 2 562.8214721679688 MULTI HCD FTMS 0 0 0 15085 278910.25 0.19288077230385073 5 -0.12755584716796875 1 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 59.368380827593164 0.01846506874148156 2 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L} 9 4 + 66.787 0 0 5.9439 5.9439 90.007 0 0 0 18.10779922093751 16.478174818886373 16.478174818886373 12.315534464597704 0 1.3807196863200843 1.6989700043360187 0.3252574989159953 0.9604093769761876 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[YN]{I|L}[{I|L}V]{I|L}[YN]{I|L};[YN]{I|L}P[Y{I|L}]TK{I|L} 5.9439;4.8478;4.3323 -;-;+ + 106 NaN NaN 185877.2 NaN 11726 3358 15085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15087 66.141 NaN 1649300 35 0 349460 0.261 + 8939 HPDPTRLLLF 10 97 604.8427181316048 1207.6708833300095 2 604.843017578125 MULTI HCD FTMS 0 0 0 15085 265127.3125 0.7739769047816923 -1 0.026153564453125 2 Unmodified _HPDPTRLLLF_ ENSG00000183751|ENST00000568546|TBL3 32.89776655970281 0.20703914202719614 2 D{M(Oxidation (M))|F}N{I|L}{[CT]|[{M(Oxidation (M))|F}G]}D 7 8 31.771 0 0 2.6307 0 0 165.22757894591956 231.08867822818596 396.31625717410554 0 0 0 0 0 0.9247425010840047 0 0.5 0.7302046884880937 D{M(Oxidation (M))|F}N{I|L}{[CT]|[{M(Oxidation (M))|F}G]}D 2.6307 - 829 + NaN NaN 348968.7 NaN 11727 3358 15085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15088 66.144 NaN 397480 35 0 34261 0.261 + 9825 HYNWLIYHL 9 70 629.82190727017 1257.6292616071398 2 629.8218383789062 MULTI HCD FTMS 0 0 0 15085 128600.1171875 0.07394802507272782 38 -1.000213623046875 3 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 92.65332237495696 0.004456439685314431 2 {[WN]|[YH]}NW{I|L}{I|L}YH{I|L} 9 0 + 89.381 0 0 7.1071 7.1071 88.439 0 0 0 6.433852901485309 6.433852901485309 6.433852901485309 6.433852901485309 0 2.6549471895720984 1.5228787452803376 0 0.7302046884880937 + + {[WN]|[YH]}NW{I|L}{I|L}YH{I|L};HYNW{I|L}{I|L}YH{I|L};{[WN]|[YH]}{I|L}{[WN]|[YH]}{I|L}YH{I|L};{[WN]|[YH]}GGW{I|L}{I|L}YH{I|L};HYGGW{I|L}{I|L}YH{I|L};[W{I|L}]N{[WN]|[YH]}{I|L}YH{I|L};[H{I|L}]Y{[WN]|[YH]}{I|L}YH{I|L};[W{I|L}]GG{[WN]|[YH]}{I|L}YH{I|L} 7.1071;6.5955;6.4911;6.3749;5.8633;4.2704;4.1858;3.2604 +;+;-;-;-;-;-;- + 295 NaN NaN 151065.6 NaN 11728 3358 15085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15089 66.148 NaN 298800 35 0 58383 0.263 + -1 CAPPVCTVL 9 61 508.7470285383201 NaN 0 508.7554931640625 PEAK HCD FTMS 0 0 0 15085 18346.08203125 1 0 0 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))APPVC(Carbamidomethyl (C))TVL_ REV__ENST00000436747.5_1_2:242681986-242688401:+|nuORF;REV__nc|ENSG00000180902|Q8N465-3|D2HGDH 11.640296217721598 0.23883959125015683 2 {I|L} 1 -1 6.9897 0 0 0.68832 0 0 383.16109701629017 516.2099777989572 899.3710748152473 0 0 0 0 0 0 0 0 0 {I|L} 0.68832 + + 71 + NaN NaN 131633.1 NaN 11729 3358 15085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15090 66.151 NaN 447630 35 0 75662 0.261 + 28834 TVFDQPQE 8 73 482.2245811549735 962.4346093767471 2 482.2247619628906 MULTI HCD FTMS 0 0 0 15085 39654.65234375 0.1800746119335102 11 -0.2858734130859375 5 Unmodified _TVFDQPQE_ DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;ENSG00000103423|ENST00000262375|DNAJA3;ENST00000577083.1_1_16:4491378-4492529:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;nc|ENSG00000103423|Q96EY1-3|DNAJA3 56.17704186161178 0.08952674942142515 2 TAAE 4 6 70.904 0 0 7.3672 0 0 0 587.2482807025838 587.2482807025838 31.016740735028847 0 0 0 0 1.4247425010840047 1.6989700043360187 1.25 0 TAAE 7.3672 - 564 + NaN NaN 152958.3 NaN 11730 3358 15085 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15092 66.156 NaN 409540 35 0 37428 0.327 + 32826 WVDEMQVQL 9 75 582.2734098437274 1162.5322667542548 2 582.2737426757812 MULTI HCD FTMS 0 0 0 15091 143681.609375 0.35677139994518625 -10 0.2712860107421875 1 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 45.69961567697781 0.039180348357221985 2 {M(Oxidation (M))|F}QVQ{I|L} 5 4 57.268 0 0 4.9261 0 0 529.2166615216812 0 529.2166615216812 0 44.5646081018038 0 0 0 1.5 0 0 0.6694451763165201 + {M(Oxidation (M))|F}QVQ{I|L} 4.9261 + + 251 NaN NaN 155861.9 NaN 11731 3359 15091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15093 66.16 NaN 235820 35 0 26653 0.261 + 27525 TAAENEFVAL 10 59 532.7666789825668 1063.5188050319334 2 532.7667846679688 MULTI HCD FTMS 0 0 0 15091 150446.53125 0.5859853950629982 6 -0.16378021240234375 2 Unmodified _TAAENEFVAL_ CON__O95678;ENSG00000170454|ENST00000252245|KRT75 20.41453444215458 0.3201613495159799 2 {M(Oxidation (M))|F}VA{I|L} 4 6 38.928 0 0 3.6603 0 0 615.2470570294937 0 615.2470570294937 0 34.32380653375944 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}VA{I|L} 3.6603 + + 20 NaN NaN 120469.5 NaN 11732 3359 15091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15094 66.164 NaN 280440 35 0 74180 0.261 + 23200 RFLNDPGHLLW 11 60 456.57865725541933 1366.714142366458 3 456.5787353515625 MULTI HCD FTMS 0 0 0 15091 52389.47265625 0.014820862138214489 39 -1.0335922241210938 3 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 14.837902256254086 0.32779928292324945 2 {I|L}W 2 9 25.969 0 0 1.9001 0 0 1049.5413387955919 0 1049.5413387955919 0 16.365006360318688 0 0 0 0.5 0 0 0 + {I|L}W 1.9001 + + 32 NaN NaN 143464.1 NaN 11733 3359 15091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15095 66.167 NaN 317920 35 0 31029 0.261 + 19284 NLPVKQWYF 9 70 597.8188014519593 1193.6230499707185 2 597.820556640625 MULTI HCD FTMS 0 0 0 15091 41952.3359375 0.20397274204384988 6 -0.16378021240234375 4 Unmodified _NLPVKQWYF_ ENSG00000088035|ENST00000263440|ALG6 10.823927491677226 0.26684000660059787 2 {[QV]|[N{I|L}]|[RA]|[KV]}Y 3 6 26.427 0 0 2.214 0 0 0 800.4108361858154 800.4108361858154 7.843181179205061 0 0 0 0 0.5 2 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}Y 2.214 - 28 NaN NaN 138887.7 NaN 11734 3359 15091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15097 66.172 NaN 605060 35 0 86280 0.327 -1 TCPHMLQTL 9 99 558.7626517994513 1115.5107506657025 2 558.76318359375 MULTI HCD FTMS 0 0 0 15096 301186.625 0.07729492821254791 13 -0.35163116455078125 1 Carbamidomethyl (C),Oxidation (M) _TC(Carbamidomethyl (C))PHM(Oxidation (M))LQTL_ ENST00000324941.4_1_7:73086172-73086286:+|nuORF 34.40172386719151 0.0910440009062557 2 V{M(Oxidation (M))|F}ENEA[PG] 8 -1 50.928 0 0 4.5654 0 0 254.12478835273595 0 254.12478835273595 0 6.247293946369794 0 0 0 2.2346368802282015 0 0.2742275032520141 0 V{M(Oxidation (M))|F}ENEA[PG] 4.5654 - 474 NaN NaN 171134.7 NaN 11735 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15098 66.177 NaN 1193200 35 0 84827 0.261 + 1210 AYLLNLNHL 9 96 535.8032968581605 1069.5920407831209 2 535.8035278320312 MULTI HCD FTMS 0 0 0 15096 254643.484375 0.3987153714560676 7 -0.2044219970703125 2 Unmodified _AYLLNLNHL_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 179.22989800431262 1.129651853483991E-12 2 AY{I|L}{I|L}N{I|L}NH{I|L} 9 0 + 92.572 0 0 8.6549 8.6549 91.508 0 0 0 78.48669508468988 6.15279269351241 6.15279269351241 7.750678166152127 0 2.6223637474483468 1.6989700043360187 0 1.3494850021680094 + + AY{I|L}{I|L}N{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}NH{I|L};AY{I|L}{I|L}GG{I|L}NH{I|L};AY{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}N{I|L}GGH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{I|L}NH{I|L};AY{I|L}{I|L}N[HN]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}GG{I|L}NH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{I|L}GGH{I|L};AY{I|L}{I|L}GG{I|L}GGH{I|L} 8.6549;7.9302;7.794;7.4672;7.0693;7.0645;6.4818;6.2048;6.2036;5.6755 +;+;-;-;-;-;-;-;-;- + 1055 + NaN NaN 276642.8 NaN 11736 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15099 66.18 NaN 698830 35 0 84833 0.261 + 35801 YYPEHFTLL 9 75 591.7949992847066 1181.575445636213 2 591.7953491210938 MULTI HCD FTMS 0 0 0 15096 131025.84375 0.6612560140230541 1 -0.0328521728515625 3 Unmodified _YYPEHFTLL_ ENSG00000100065|ENST00000251973|CARD10 42.09456458481378 0.05572955244001856 2 T{I|L}{I|L} 3 6 25.49 0 0 2.1573 0 0 836.350877830275 0 836.350877830275 0 14.062959475437749 0 0 0 0.5 0 0.3807196863200844 0 + T{I|L}{I|L} 2.1573 + + 156 NaN NaN 204217.9 NaN 11737 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15100 66.183 NaN 431100 35 0 19955 0.261 + 6347 FPFYYEIKM 9 72 627.2987934101918 1252.5830338871835 2 627.2987060546875 MULTI HCD FTMS 0 0 0 15096 128849.625 0.09349300233497367 14 -0.381439208984375 4 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 67.83816525789305 0.009787749748478139 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 74.241 0 0 5.927 5.927 83.843 0 0 0 0.0568324259256201 1.68986371036398 0.0568324259256201 0.0568324259256201 0 2.774227503252014 2 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[NP]VYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE;[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[{I|L}T][VG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PV[DG]{[DS]|[MA]|[CV]|TT}E{I|L}K{M(Oxidation (M))|F} 5.927;5.9225;5.7921;5.3873;4.4673;4.2948;3.755;3.3914;3.3376;3.1914 +;+;-;-;-;-;-;-;-;- + 1008 NaN NaN 161534.2 NaN 11738 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15101 66.187 NaN 689880 35 0 49982 0.264 + 21560 PYLWWKKYI 9 83 432.90916365891104 1295.7056615769332 3 432.9091796875 MULTI HCD FTMS 0 0 0 15096 103305.171875 1 0 0 5 Unmodified _PYLWWKKYI_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 38.175570920033316 0.07371992880350783 2 PY{I|L} 3 6 35.891 0 0 2.77 0 0 0 919.4825228307228 919.4825228307228 18.416375079047498 0 0 0 0 0.3494850021680094 1.3979400086720375 0 0 + PY{I|L} 2.77 + + 74 + NaN NaN 209723.2 NaN 11739 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15102 66.19 NaN 138210 35 0 9856.7 0.261 + 34878 YSEDFSENQF 10 51 422.5044405935522 NaN 0 422.5045471191406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YSEDFSENQF_ ENSG00000137766|ENST00000260323|UNC13C 10.073929032068715 0.33156240198919784 2 G 1 10 5.4846 0 0 0.6506 0 0 620.8939387048795 162.05591760806877 782.9498563129482 0 0 0 0 0 0 0 0 0 G 0.6506 - 11 + NaN NaN 104108.4 NaN 11740 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15103 66.193 NaN 256930 35 0 19907 0.261 + 30881 VQPSLLHCGQL 11 64 597.8188014519593 1193.6230499707185 2 598.3049926757812 MULTI HCD FTMS 0 0 0 15096 34049.66796875 0.3361770929453416 8 -0.22728729248046875 7 Unmodified _VQPSLLHCGQL_ REV__ENST00000368474.8_1_1:154555057-154555423:-|nuORF 11.494710602746466 0.35692862141139436 2 {[QV]|[N{I|L}]|[RA]|[KV]}Y 3 -1 26.171 0 0 2.1926 0 0 0 800.4090966838622 800.4090966838622 10.597718523607966 0 0 0 0 0.5 1.5228787452803376 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}Y 2.1926 - 40 NaN NaN 143736.3 NaN 11741 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15104 66.197 NaN 132150 35 0 13006 0.261 + -1 KMLYHNLFGP 10 49 618.3132843013648 NaN 0 618.3143920898438 PEAK HCD FTMS 0 0 0 15096 50419.953125 0.7241618158281057 7 -0.2044219970703125 8 Oxidation (M) _KM(Oxidation (M))LYHNLFGP_ REV__ENST00000568980.1_1_15:34781237-34781759:-|nuORF 3.5964929083625545 0.337106189561315 2 {M(Oxidation (M))|F}K 2 -1 13.271 0 0 1.0749 0 0 244.17642104237945 712.2819918268186 956.4584128691981 0 0 0 0 0 0.2302046884880938 0 0 0 {M(Oxidation (M))|F}K 1.0749 - 17 + NaN NaN 110674.5 NaN 11742 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15105 66.2 NaN 86066 35 0 5763.4 0.264 + 28732 TSTTSSSF 8 52 409.18340155066966 NaN 0 408.85614013671875 PEAK HCD FTMS 0 0 0 15096 6868.95166015625 0.2961653116120375 6 -0.17493438720703125 9 Unmodified _TSTTSSSF_ REV__ENSG00000067248|ENST00000251636|DHX29;REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF 2.577480529830294 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.85621 0 0 256.0460788751764 444.200485912928 700.2465647881045 0 0 0 0 0 0 0 0 0 {I|L} 0.85621 - 5 + NaN NaN 95383.5 NaN 11743 3360 15096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15107 66.205 NaN 1596400 35 0 135780 0.327 + 1458 AYSPRFLYI 9 88 565.3055500431743 1128.5965471531485 2 565.305908203125 MULTI HCD FTMS 0 0 0 15106 876316.25 0.916215307911653 2 -0.05902862548828125 1 Unmodified _AYSPRFLYI_ ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 79.59630418116434 0.005983006570063981 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPR{M(Oxidation (M))|F}{I|L}Y{I|L} 9 0 + 78.698 0 0 6.9731 6.9731 87.097 0 0 0 3.4861986914063294 3.4861986914063294 3.4861986914063294 3.4861986914063294 0 2.1435078169319297 2 1.0941876774005248 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPR{M(Oxidation (M))|F}{I|L}Y{I|L};AYSPR{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SPR{M(Oxidation (M))|F}{I|L}{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}APR{M(Oxidation (M))|F}{I|L}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}APR{M(Oxidation (M))|F}{I|L}{I|L}Y 6.9731;6.6642;5.9774;4.2759;3.2802 +;+;-;-;- + 495 NaN NaN 349363.6 NaN 11744 3361 15106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15108 66.209 NaN 908540 35 0 106090 0.261 + 5202 FFDAELSQM 9 96 552.2391290246032 1102.4637051160064 2 552.2393798828125 MULTI HCD FTMS 0 0 0 15106 358178.09375 0.09948824962745177 45 -1.2207107543945312 2 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 145.12958885780327 1.3974915176135797E-05 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 80.033 0 0 7.2594 7.2594 90.766 0 0 0 3.2568864632742844 55.2512186568557 3.2568864632742844 9.208187539523749 0 2.9916440611282624 0 1.5044321917401078 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SM[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAEK{[CP]|[EA]}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[YC]|[HE]}EAD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DM[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]EAD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}] 7.2594;6.4242;5.0161;4.3698;3.8886;3.5346;2.3039;2.1265;1.8504;1.7678 +;-;-;-;-;-;-;-;-;- + 1522 NaN NaN 247099 NaN 11745 3361 15106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15109 66.213 NaN 341870 35 0 16696 0.261 + 6348 FPFYYEIKM 9 66 627.2987934101918 1252.5830338871835 2 627.298583984375 MULTI HCD FTMS 0 0 0 15106 203694.21875 0.14780007368445494 15 -0.3880615234375 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 51.41523569358685 0.02959097413485123 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 64.479 0 0 5.1477 5.1477 85.756 0 0 0 49.99835887615035 6.439389643433628 6.439389643433628 7.796225351387207 0 2.190614065464281 0 0 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YK]YY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}PV[DG]{[DS]|[MA]|[CV]|TT}E{I|L}K{M(Oxidation (M))|F};{[HG]|PP}V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YE{I|L}K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][YE]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}K{M(Oxidation (M))|F};{[HG]|PP}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HH[Y{M(Oxidation (M))|F}];{[HG]|PP}[YN][{M(Oxidation (M))|F}V]E{I|L}K{M(Oxidation (M))|F} 5.1477;4.5253;4.1813;2.4767;1.412;0.58398;0.16654;0.038321 +;+;-;-;-;-;-;- + 386 + NaN NaN 142497.6 NaN 11746 3361 15106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15110 66.216 NaN 617800 35 0 143480 0.261 + 14084 KYWDVPPPGF 10 72 603.3026020785045 1204.590651223809 2 603.3009643554688 MULTI HCD FTMS 0 0 0 15106 164305.421875 0.3631889766499078 36 -0.95147705078125 4 Unmodified _KYWDVPPPGF_ ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 41.95555342248728 0.12843670176738353 2 [YV]GPPV{[WS]|[C(Carbamidomethyl (C)){I|L}]}GP{M(Oxidation (M))|F} 11 8 + 75.961 0 0 6.306 6.306 85.608 0 0 0 10.427965835756424 4.598335460300504 4.598335460300504 2.7422750325201264 0 1 2 0 0 [YV]GPPV{[WS]|[C(Carbamidomethyl (C)){I|L}]}GP{M(Oxidation (M))|F};[YV]G[VS]WPPGP{M(Oxidation (M))|F};[YV]GPP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PGP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PPGP{M(Oxidation (M))|F};[YV]GP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KG]Y{M(Oxidation (M))|F};[YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[TA]PPGP{M(Oxidation (M))|F};[YV]G[VS]W[KG]Y{M(Oxidation (M))|F};[YV]GP{[WS]|[C(Carbamidomethyl (C)){I|L}]}VPGP{M(Oxidation (M))|F};[YV]GPPVD{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YK]WDVPPGP{M(Oxidation (M))|F} 6.306;6.0783;5.8909;5.8909;5.8236;5.5171;5.1809;4.976;4.773;4.3182 -;-;-;-;-;-;-;-;-;- 979 NaN NaN 180133.5 NaN 11747 3361 15106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15111 66.22 NaN 201490 35 0 14374 0.263 + -1 PMAEELNL 8 65 466.7230925852177 931.4316322372355 2 466.7233581542969 MULTI HCD FTMS 0 0 0 15106 65931.5 0.42973752868657206 8 -0.21734619140625 5 Oxidation (M) _PM(Oxidation (M))AEELNL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 11.640296217721598 0.50814828952472 2 {I|L}N{I|L} 3 -1 29.693 0 0 3.1879 0 0 573.2098177416505 0 573.2098177416505 0 16.593793813122062 0 0 0 0.3494850021680094 0 0 0 {I|L}N{I|L} 3.1879 + + 35 NaN NaN 121361.1 NaN 11748 3361 15106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15113 66.225 NaN 5307600 35 0 307860 0.327 + 27206 SYNNFFRMF 9 116 621.2737767427004 1240.5330005522007 2 621.2742309570312 MULTI HCD FTMS 0 0 0 15112 3446176 0.62410932909772 -2 0.0524139404296875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 179.17365725063826 1.1335045685127237E-12 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 111.47 0 0 8.9854 0 0 0 208.0363710992797 208.0363710992797 85.25563758169427 0 0 0 0 2.4604093769761874 2 0.8778623208748889 1.110924374808178 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8.9854 - 7174 + NaN NaN 566423.6 NaN 11749 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15114 66.229 NaN 437490 35 0 134130 0.262 + 9269 HPLYVDVVL 9 47 527.8001685095187 1053.5857840858373 2 527.8003540039062 MULTI HCD FTMS 0 0 0 15112 242272.46875 0.5488904372003888 -2 0.0524139404296875 2 Unmodified _HPLYVDVVL_ ENSG00000177663|ENST00000319363|IL17RA;nc|ENSG00000177663|Q96F46-2|IL17RA 11.640296217721598 0.25978676193971967 2 VV{I|L} 3 6 31.198 0 0 2.9611 0 0 724.3556385724625 0 724.3556385724625 0 15 0 0 0 0.5 0 0 0 + VV{I|L} 2.9611 + + 19 NaN NaN 163197.9 NaN 11750 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15115 66.233 NaN 929130 35 0 146570 0.261 + 3427 EFLDYIFDF 9 80 604.7812068714934 NaN 0 604.7684326171875 PEAK HCD FTMS 0 0 0 15112 16650.544921875 1 0 0 3 Unmodified _EFLDYIFDF_ REV__ENSG00000145555|ENST00000513610|MYO10;REV__MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;REV__MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant 7.910154910731844 0.25691533546754686 2 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F} 6 -1 23.607 0 0 1.955 0 0 165.10528955917067 277.0825289361938 442.18781849536447 0 0 0 0 0 0 0 0 0.3252574989159953 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F} 1.955 - 250 + NaN NaN 228205.1 NaN 11751 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15116 66.236 NaN 423420 35 0 135720 0.261 + -1 IECWDSHSN 9 66 574.2273512979058 1146.4401496626115 2 574.2279052734375 MULTI HCD FTMS 0 0 0 15112 145216.671875 0.06128354962986158 15 -0.3914337158203125 4 Carbamidomethyl (C) _IEC(Carbamidomethyl (C))WDSHSN_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|2 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F}EN 3 -1 14.693 0 0 1.2816 0 0 738.3041249005875 0 738.3041249005875 0 3.750612633917001 0 0 0 0 0 0 0 {M(Oxidation (M))|F}EN 1.2816 - 24 NaN NaN 163801.9 NaN 11752 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15117 66.239 NaN 474810 35 0 55896 0.261 + 29990 VFIVSFISI 9 71 512.8083554127695 NaN 0 512.7949829101562 PEAK HCD FTMS 0 0 0 15112 8784.2734375 0.4451519290535859 3 -0.09517669677734375 5 Unmodified _VFIVSFISI_ tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 7.289230182591677 0.2599242500475609 2 TV{I|L} 3 7 17.065 0 0 1.6671 0 0 545.3602669091391 162.02277551822502 707.3830424273641 0 0 0 0 0 0 0 0.3252574989159953 0 TV{I|L} 1.6671 - 115 + NaN NaN 168785 NaN 11753 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15118 66.242 NaN 862930 35 0 36213 0.261 + 34401 YPEQEIVNL 9 104 552.7815578031194 1103.5485626730388 2 553.7960205078125 MULTI HCD FTMS 0 0 0 15112 19704.4375 0.5321081175049378 5 -0.152008056640625 6 Unmodified _YPEQEIVNL_ ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 19.256988751693697 0.19398022840297344 2 [YN]DEA{I|L}R{I|L} 8 6 36.86 0 0 3.3401 0 0 0 126.04389058904998 126.04389058904998 13.367421011425193 0 0 0 0 0 2 0 1.110924374808178 [YN]DEA{I|L}R{I|L} 3.3401 - 1362 NaN NaN 231222 NaN 11754 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15119 66.246 NaN 421770 35 0 19200 0.261 + 22751 QYHFVFNNF 9 79 608.2822131114916 1214.5498732897831 2 608.2824096679688 MULTI HCD FTMS 0 0 0 15112 75556.0390625 0.5166664832464901 -2 0.0524139404296875 7 Unmodified _QYHFVFNNF_ nc|ENSG00000225830|P0DP91|ERCC6 57.72198328787511 0.020768266150574023 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[W{I|L}]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}N 9 7 + 39.859 0 0 3.2818 3.2818 81.083 0 0 0 0.9581214302379379 33.40539637920487 0.9581214302379379 1.7609125905568135 0 1.3807196863200843 0 0 1.0010912013506126 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[W{I|L}]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}N;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}N[W{I|L}]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}N;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[W{I|L}]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}N;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[W{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}N[W{I|L}]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}N;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}GG[W{I|L}]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}N;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}N[W{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[W{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGN;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}N[W{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGN;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}GG[W{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN 3.2818;3.1368;2.5236;2.4117;2.3787;2.3787;2.2667;1.6535;1.5085;1.5085 -;-;-;-;-;-;-;-;-;- 305 NaN NaN 155619 NaN 11755 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15120 66.249 NaN 199210 35 0 21162 0.261 + 28103 TIAEIKNLF 9 63 524.8053500955941 1047.5961472579882 2 524.805419921875 MULTI HCD FTMS 0 0 0 15112 30873.93359375 0.2445976829510888 10 -0.2830352783203125 8 Unmodified _TIAEIKNLF_ ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF 34.40172386719151 0.0910440009062557 2 [{I|L}T]AE 4 5 41.682 0 0 3.9789 0 0 0 630.3621920221311 630.3621920221311 21.197887582883936 0 0 0 0 0.8494850021680094 2 0 0 + [{I|L}T]AE 3.9789 + + 19 + NaN NaN 126502 NaN 11756 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15121 66.252 NaN 328630 35 0 48007 0.262 + 21561 PYLWWKKYI 9 59 432.90916365891104 1295.7056615769332 3 433.2437744140625 MULTI HCD FTMS 0 0 0 15112 47783.67578125 0.5184197053904945 4 -0.12252044677734375 9 Unmodified _PYLWWKKYI_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 16.149105407346934 0.22083165093524068 2 PY 2 7 35.234 0 0 2.7193 0 0 0 1032.5685468148467 1032.5685468148467 21.25447181216778 0 0 0 0 0.3807196863200844 1.5228787452803376 0 0 + PY 2.7193 + + 10 + NaN NaN 135410.9 NaN 11757 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15122 66.256 NaN 367820 35 0 24435 0.261 -1 TADPLSNMVL 10 70 538.7670808330049 1075.5196087328097 2 538.7674560546875 MULTI HCD FTMS 0 0 0 15112 37818.75 0.5452855184949092 1 -0.03946685791015625 10 Oxidation (M) _TADPLSNM(Oxidation (M))VL_ ENSG00000164258|ENST00000296684|NDUFS4;ENST00000509443.1_1_5:52942143-52954486:+|nuORF 19.625955294349634 0.3275374527965692 2 [YN]{I|L}TS[{I|L}P]D[PG] 10 -1 + 31.264 0 0 2.9069 2.9069 86.007 0 0 0 6.641726712132137 13.817117558728619 6.641726712132137 11.598630062565057 0 1.0629529932484498 1.3010299956639813 0 0 [YN]{I|L}TS[{I|L}P]D[PG];[YN]{I|L}[C(Carbamidomethyl (C))R][HT]{I|L};[YN]{I|L}{[HG]|PP}[YR][PG];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[HV]TC(Carbamidomethyl (C))V{I|L};[TA]D[{I|L}P]ST[VG]C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N[HV]TQM{I|L};{I|L}T[YN]{[HG]|PP}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[HV][YR][PG];{I|L}T[YN][HV]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[TA]D[{I|L}P]S{[QN]|[E{I|L}]|[KN]}[KC] 2.9069;1.8285;1.2899;1.1696;1.039;1.0058;0.94294;0.63997;0.29305;0.14362 -;-;-;-;-;-;-;-;-;- 305 NaN NaN 159112.4 NaN 11758 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15123 66.259 NaN 241930 35 0 29723 0.261 + 16948 LYHLQPIF 8 61 515.7894929123447 1029.5644328914893 2 515.78955078125 MULTI HCD FTMS 0 0 0 15112 31590.98828125 0.41638690585538124 -2 0.0524139404296875 11 Unmodified _LYHLQPIF_ REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 32.116972079565 0.3321965280364247 2 {I|L}YV 3 -1 50.177 0 0 4.8736 0 0 0 651.3263133165318 651.3263133165318 20.713337517843655 0 0 0 0 1 1.6989700043360187 0 0 {I|L}YV 4.8736 - 51 + NaN NaN 145224.4 NaN 11759 3362 15112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15125 66.264 NaN 2808100 35 0 453180 0.327 + 27537 TAAENEFVTL 10 100 547.7718074841189 1093.5290620350377 2 547.7722778320312 MULTI HCD FTMS 0 0 0 15124 1833173.375 0.0667745026316428 16 -0.38797760009765625 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 174.48199792848246 1.3978202709549945E-11 2 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 106.96 0 0 9.7811 9.7811 91.276 0 0 0 4.503187623076954 16.53212513775344 4.503187623076954 4.503187623076954 0 2.885151878060192 0 1.624803706770636 1.5484550065040281 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[PG]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}VT{I|L};[TA]AEN{I|L}T{[{M(Oxidation (M))|F}D]|MM}{I|L} 9.7811;9.3693;8.9858;8.5272;7.8684;7.527;6.7317;5.6143;5.0715;4.0627 +;-;-;-;-;-;-;-;-;- + 2511 NaN NaN 434997.6 NaN 11760 3363 15124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15126 66.268 NaN 2146700 35 0 553030 0.261 + 20343 NYRDTFFNL 9 75 595.2860736288309 1188.5575943244617 2 595.3019409179688 MULTI HCD FTMS 0 0 0 15124 80379.296875 0.31967941050887394 10 -0.2597503662109375 2 Unmodified _NYRDTFFNL_ ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 18.373094154950223 0.20161688160436167 2 [YV]P{I|L}MKEY{M(Oxidation (M))|F} 9 8 + 62.062 0 0 5.2216 5.2216 84.415 0 0 0 15.740312677277188 16.478174818886373 15.740312677277188 4.194699959806982 0 0 1.6989700043360187 0 0 [YV]P{I|L}MKEY{M(Oxidation (M))|F};[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P][YV]MKEY{M(Oxidation (M))|F};[YV]P{I|L}M[YE]K{M(Oxidation (M))|F};[{I|L}P]M[YV]KEY{M(Oxidation (M))|F};{M(Oxidation (M))|F}DP[EP]M{I|L}P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[{I|L}P][YV]M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}MK[Y{M(Oxidation (M))|F}]E;[{I|L}P]MK[YE]VY{M(Oxidation (M))|F} 5.2216;4.8687;4.595;3.8973;3.644;3.5625;3.5455;3.5443;3.3092;3.3092 -;-;-;-;-;-;-;-;-;- 809 NaN NaN 433507.2 NaN 11761 3363 15124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15127 66.272 NaN 636690 35 0 36012 0.261 + 29106 TYGEIFEKF 9 94 567.2792195549672 1132.5438861767343 2 567.2792358398438 MULTI HCD FTMS 0 0 0 15124 232931.59375 0.011078459658521528 125 -3.3538589477539062 3 Unmodified _TYGEIFEKF_ ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2 79.59630418116434 0.005983006570063981 2 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 7 7 58.868 0 0 5.1978 0 0 0 229.11887537174064 229.11887537174064 23.40997018521996 0 0 0 0 1.274227503252014 1.6989700043360187 0.6747425010840047 0 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 5.1978 - 874 + NaN NaN 203016.7 NaN 11762 3363 15124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15128 66.275 NaN 197770 35 0 12810 0.261 + 34994 YSVGIYRDISI 11 55 643.3431590431238 1284.6717651530475 2 643.3423461914062 MULTI HCD FTMS 0 0 0 15124 59558.45703125 0.07010693486314647 16 -0.38797760009765625 4 Unmodified _YSVGIYRDISI_ REV__ADRA1A|p.S296Ffs*19|1|0.08|ENSG00000120907|chr8:26770663-26770664|-/CAGTCTTCCAA|frameshift_variant;REV__ENSG00000120907|ENST00000380573|ADRA1A;REV__nc|ENSG00000120907|P35348-2|ADRA1A;REV__nc|ENSG00000120907|P35348-3|ADRA1A;REV__nc|ENSG00000120907|P35348-4|ADRA1A;REV__nc|ENSG00000120907|P35348-5|ADRA1A;REV__nc|ENSG00000120907|P35348-6|ADRA1A;REV__nc|ENSG00000120907|P35348-7|ADRA1A;REV__nc|ENSG00000120907|P35348-8|ADRA1A;REV__nc|ENSG00000120907|P35348-9|ADRA1A 8.97624648632007 0.3788720818291249 2 {I|L}S{I|L} 3 -1 36.198 0 0 2.8177 0 0 953.464101385941 0 953.464101385941 0 36.197887582883936 0 0 0 1 0 0 0 {I|L}S{I|L} 2.8177 + + 10 NaN NaN 134947.8 NaN 11763 3363 15124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15129 66.279 NaN 307580 35 0 15900 0.261 + 30891 VQSFTNVRIM 10 78 597.8188014519593 1193.6230499707185 2 598.3072509765625 MULTI HCD FTMS 0 0 0 15124 15601.2568359375 0.15403337190285232 10 -0.2597503662109375 5 Unmodified _VQSFTNVRIM_ REV__ENST00000447923.5_1_7:94146874-94146946:+|nuORF 11.494710602746466 0.4035943721457025 2 {[QV]|[N{I|L}]|[RA]|[KV]}Y 3 -1 26.427 0 0 2.214 0 0 0 800.4093408244872 800.4093408244872 18.95242492728684 0 0 0 0 0.5 1.3979400086720375 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}Y 2.214 - 78 NaN NaN 146057.3 NaN 11764 3363 15124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15131 66.283 NaN 1575200 35 0 217860 0.327 + 34319 YPDTDVILM 9 91 541.7574483420049 1081.5003437508096 2 541.7576293945312 MULTI HCD FTMS 0 0 0 15130 762515.6875 0.9994799534251924 -5 0.1275634765625 1 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 85.35673624503755 0.00464763827098139 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTDV{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 69.013 0 0 6.3812 6.3812 91.792 0 0 0 0.9936247538460918 54.11819340634496 0.9936247538460918 17.795000083553212 0 2.2396518287104437 0 1.0752574989159953 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTDV{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTDV{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTEVV{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DTEVV{M(Oxidation (M))|F}{I|L} 6.3812;4.7358;3.2592;1.6138 +;-;-;- + 840 NaN NaN 337523 NaN 11765 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15132 66.288 NaN 982600 35 0 63816 0.261 + 34339 YPEEFEKLL 9 95 584.3002245455127 1166.5858961578253 2 584.3007202148438 MULTI HCD FTMS 0 0 0 15130 638315.75 1 0 0 2 Unmodified _YPEEFEKLL_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 128.93241758739586 0.0006697181619526092 2 YPEE{M(Oxidation (M))|F}EK{I|L}{I|L} 9 0 + 104.62 0 0 8.968 8.968 89.586 0 0 0 1.9739517804110562 1.9739517804110562 1.9739517804110562 1.9739517804110562 0 3.1237125054200234 1.5228787452803376 0.9559771852360797 0 + + YPEE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}E{I|L}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}E{I|L}Q{I|L};[EP]YE{M(Oxidation (M))|F}EK{I|L}{I|L};[YE]PE{M(Oxidation (M))|F}EK{I|L}{I|L};[EP]EY{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}E{I|L}[AG]{I|L};YP{M(Oxidation (M))|F}EEEK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]Y{I|L}{I|L} 8.968;8.7988;7.0512;7.0512;6.8712;6.6629;6.3562;6.2619;6.2061;5.9762 +;+;-;-;-;-;-;-;-;- + 1974 + NaN NaN 239645.2 NaN 11766 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15133 66.292 NaN 401300 35 0 29825 0.261 + 34476 YPFESAEAQL 10 72 577.7718508918884 1153.5291488505768 2 577.7720947265625 MULTI HCD FTMS 0 0 0 15130 165730.046875 0.7513151368701435 3 -0.093048095703125 3 Unmodified _YPFESAEAQL_ ENSG00000167325|ENST00000300738|RRM1 36.506200033944 0.17572556831573002 2 EAQ{I|L} 4 6 42.423 0 0 3.6776 0 0 694.2966432168008 0 694.2966432168008 0 27.09305672571311 0 0 0 1.0484550065040281 0 0 0 + EAQ{I|L} 3.6776 + + 120 NaN NaN 149482.2 NaN 11767 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15134 66.295 NaN 241340 35 0 19339 0.261 + 9826 HYNWLIYHL 9 67 629.82190727017 1257.6292616071398 2 629.8218383789062 MULTI HCD FTMS 0 0 0 15130 139155.03125 0.0800173434124323 44 -1.1921157836914062 4 Unmodified _HYNWLIYHL_ ENSG00000174953|ENST00000496811|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-2|DHX36;nc|ENSG00000174953|Q9H2U1-3|DHX36 51.629811660486645 0.02929079705179888 2 HYN[W{I|L}]{I|L}YH{I|L} 9 0 + 65.556 0 0 5.2127 5.2127 87.257 0 0 0 44.5872875024979 9.009461452434238 9.009461452434238 9.208187539523749 0 2.3494850021680094 1.6989700043360187 0 0 + + HYN[W{I|L}]{I|L}YH{I|L};HYGG[W{I|L}]{I|L}YH{I|L} 5.2127;4.4805 +;- + 78 + NaN NaN 123476.6 NaN 11768 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15135 66.298 NaN 360030 35 0 63581 0.261 + 20122 NYIPYLTKL 9 52 562.8209988035449 1123.6274446738896 2 562.8209838867188 MULTI HCD FTMS 0 0 0 15130 169019.140625 0.1168854223818707 11 -0.2964935302734375 5 Unmodified _NYIPYLTKL_ ENSG00000205413|ENST00000379958|SAMD9 55.50274090549119 0.023872834264864425 2 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L} 9 4 + 64.485 0 0 5.739 5.739 90.497 0 0 0 27.037881139012043 42.719159051337385 27.037881139012043 15.995302317543647 0 1.3807196863200843 1.6989700043360187 0.3494850021680094 0.7059771852360797 [YN]{I|L}[{I|L}V]{[{M(Oxidation (M))|F}D]|MM}K{I|L};[YN]{I|L}[{I|L}V]{I|L}[YN]{I|L} 5.739;4.3155 -;- 45 NaN NaN 142248.1 NaN 11769 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15136 66.301 NaN 434610 35 0 49403 0.261 + 5762 FPAGYMYPSM 10 82 590.2460169250976 1178.477480916995 2 590.24609375 MULTI HCD FTMS 0 0 0 15130 153263.921875 0.7698395805697206 -5 0.1275634765625 6 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE] 8 7 + 49.786 0 0 4.2246 4.2246 82.354 0 0 0 7.031388050344489 2.5847846565513777 2.5847846565513777 2.5847846565513777 0 1.3807196863200843 0 1.2614393726401687 0 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE];M{[DS]|[MA]|[CV]|TT}YWYPSM;M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE];[WY][VS]{M(Oxidation (M))|F}YPSM;M{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}{[DA]|[EG]}YPSM;M[AG][Y{I|L}]{M(Oxidation (M))|F}Y[WE];[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}YPSM;M{[DS]|[MA]|[CV]|TT}Y{M(Oxidation (M))|F}[W{I|L}]SM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}YPSM;[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}Y[WE] 4.2246;4.0053;3.6497;3.628;3.6038;3.4387;3.1616;2.8276;2.732;2.7202 -;-;-;-;-;-;-;-;-;- 1389 + NaN NaN 162985.6 NaN 11770 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15137 66.305 NaN 313270 35 0 99694 0.262 -1 TAMDVVYAL 9 47 499.74673630115075 997.4789196691015 2 499.7467346191406 MULTI HCD FTMS 0 0 0 15130 68537.2890625 0.08397750941208057 -19 0.48661041259765625 7 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 28.486842064014134 0.11819662193267319 2 VYA{I|L} 4 -1 45.745 0 0 4.5861 0 0 533.215101127101 0 533.215101127101 0 31.141303353600094 0 0 0 1.3807196863200843 0 0 0 VYA{I|L} 4.5861 + + 43 NaN NaN 134977.8 NaN 11771 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15138 66.308 NaN 189100 35 0 51586 0.262 + -1 LLCCLLTILF 10 40 403.5642445128341 1207.6709041387023 3 403.5639953613281 MULTI HCD FTMS 0 0 0 15130 64734.59765625 0.8996702306268365 5 -0.138824462890625 8 Carbamidomethyl (C) _LLC(Carbamidomethyl (C))CLLTILF_ REV__CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant 9.5439744041441 0.42184090036563754 2 {I|L}{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5644 0 0 929.5084723533492 0 929.5084723533492 0 28.494850021680094 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5644 + + 11 + NaN NaN 120136.7 NaN 11772 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15139 66.311 NaN 339570 35 0 15855 0.261 + 31811 VYMDWYEKF 9 72 648.7838371335808 1295.5531213339616 2 648.7835083007812 MULTI HCD FTMS 0 0 0 15130 67882.5390625 0.030160185140755226 108 -2.9038543701171875 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 42.312485326615175 0.05472917415473307 2 [YV]{M(Oxidation (M))|F}DWYE 7 2 59.231 0 0 4.5719 0 0 0 290.15094934635005 290.15094934635005 38.26229158546596 0 0 0 0 1.9802046884880937 2 0 0 + [YV]{M(Oxidation (M))|F}DWYE 4.5719 + + 111 + NaN NaN 157292.2 NaN 11773 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15140 66.315 NaN 111270 35 0 25288 0.264 + 3616 EKWRQPDRF 9 43 421.21991103241305 NaN 0 421.2290344238281 PEAK HCD FTMS 0 0 0 15130 30132.068359375 1 0 0 10 Unmodified _EKWRQPDRF_ REV__ENSG00000181555|ENST00000409792|SETD2;REV__nc|ENSG00000181555|Q9BYW2-2|SETD2;REV__nc|ENSG00000181555|Q9BYW2-3|SETD2;REV__SETD2-CCDC12|2|fusion;REV__SETD2-CCDC12|3|fusion;REV__SETD2-CCDC12|4|fusion 1.1933415558491238 0.28946407562688115 2 C(Carbamidomethyl (C)) 1 -1 0.088644 0 0 0.010547 0 0 522.2797746021324 155.09771143131096 677.3774860334433 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.010547 - 2 + NaN NaN 113780.7 NaN 11774 3364 15130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15142 66.32 NaN 1022100 35 0 537190 0.327 -1 0 62 427.30254388295293 852.5905348327059 2 427.3026123046875 MULTI HCD FTMS 0 0 0 15141 667202.375 0.7298579423866062 -4 0.11473846435546875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.4331 0 0 687.510683613759 0 687.510683613759 0 8.266062568876718 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4331 - 8 + NaN NaN 244725.3 NaN 11775 3365 15141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15143 66.324 NaN 1309000 35 0 176350 0.261 + -1 NYAELLCVNH 10 78 616.790361248611 1231.566169564022 2 616.79052734375 MULTI HCD FTMS 0 0 0 15141 425804.09375 0.4859673012375541 -4 0.11473846435546875 2 Carbamidomethyl (C) _NYAELLC(Carbamidomethyl (C))VNH_ REV__ENSG00000276023|ENST00000617516|DUSP14 39.94969957227396 0.1458432724694501 2 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L} 9 -1 + 69.535 0 0 5.6461 5.6461 92.214 0 0 0 35.18548670401452 15.23850404910938 15.23850404910938 40.569582918233436 0 2.5356668758921828 1.6989700043360187 0.3807196863200844 0.5 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{[NV]|[RG]}QQYH{I|L} 5.6461;2.3519 -;- 322 + NaN NaN 287913.4 NaN 11776 3365 15141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15144 66.332 NaN 358380 35 0 45163 0.261 + 10829 ITMFEDFDV 9 83 558.74975972169 NaN 0 558.762939453125 PEAK HCD FTMS 0 0 0 15141 20682.90625 1 0 0 3 Unmodified _ITMFEDFDV_ REV__ENSG00000183166|ENST00000395275|CALN1;REV__nc|ENSG00000183166|Q9BXU9-1|CALN1 11.640296217721598 0.23883959125015683 2 TV{M(Oxidation (M))|F} 3 -1 14.587 0 0 1.3077 0 0 131.07116455744261 634.2037447565061 765.2749093139487 0 0 0 0 0 0 0 0.2614393726401688 0 TV{M(Oxidation (M))|F} 1.3077 - 67 + NaN NaN 140584.3 NaN 11777 3365 15141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15145 66.336 NaN 517780 35 0 44906 0.261 + 18133 MPDFDLHL 8 78 502.2308257089257 1002.4470984846514 2 502.2314758300781 MULTI HCD FTMS 0 0 0 15141 164883.84375 0.14910666274345388 27 -0.7077789306640625 4 Oxidation (M) _M(Oxidation (M))PDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 109.62928328672726 0.035128097911409736 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 61.13 0 0 6.098 6.098 87.607 0 0 0 3.979400086720375 46.18108131561997 3.979400086720375 8.556518697048723 0 2.1549471895720984 0 1.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}D{I|L}H{I|L};{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}D{I|L}H{I|L};[EP]E{[YC]|[HE]}{I|L}H{I|L};{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}DH{I|L}{I|L};[H{I|L}][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}DPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP][WQ]{I|L};[EP]E{[DS]|[MA]|[CV]|TT}[WQ]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[TP]{I|L}[WQ];{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}H]|[RQ]}DD{I|L}{I|L};[EP]E{[DS]|[MA]|[CV]|TT}{I|L}[WQ] 6.098;5.2445;4.8035;4.4677;2.6723;1.791;1.4635;0.59109;0.56333;0.2635 +;+;-;-;-;-;-;-;-;- + 272 NaN NaN 164732.8 NaN 11778 3365 15141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15146 66.339 NaN 214220 35 0 16713 0.261 -1 AYMPHTFFI 9 64 571.770411630336 1141.5262703274718 2 571.7911376953125 MULTI HCD FTMS 0 0 0 15141 11260.9287109375 0.4374547889940611 6 -0.16164398193359375 5 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;nc|ENSG00000147162|O15294-4|OGT 7.289230182591677 0.29575926068275815 2 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 8 -1 52.696 0 0 4.6163 0 0 165.0033270196464 0 165.0033270196464 0 30.01979729363555 0 0 0 0 0 0.3807196863200844 0.7742275032520141 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 4.6163 - 194 + NaN NaN 117701.7 NaN 11779 3365 15141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15147 66.342 NaN 227020 35 0 15247 0.261 + 15670 LPEKLTIYTTL 11 61 646.3790309857881 1290.743509038376 2 646.37890625 MULTI HCD FTMS 0 0 0 15141 108290.578125 0.6402116969072125 -4 0.11473846435546875 6 Unmodified _LPEKLTIYTTL_ ENSG00000136937|ENST00000375147|NCBP1 48.07275321834293 0.08933233718691559 2 {I|L}YT[{I|L}T] 5 6 48.328 0 0 3.7442 0 0 681.3953167549761 0 681.3953167549761 0 30.368931070804592 0 0 0 2 0 0.7614393726401688 0 + {I|L}YT[{I|L}T] 3.7442 + + 98 + NaN NaN 135317.6 NaN 11780 3365 15141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15149 66.347 NaN 742390 35 0 95419 0.327 + 5203 FFDAELSQM 9 83 552.2391290246032 1102.4637051160064 2 552.2393188476562 MULTI HCD FTMS 0 0 0 15148 261949.46875 0.07275959806455466 50 -1.3602142333984375 1 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 142.0795815696625 1.719916958814042E-05 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D + + 82.559 2.0066 0.49041 7.4886 7.4886 66.551 0 0 0 0 67.86658945444961 0 0 0 2.75 0 0.8684151806525389 0.7614393726401688 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 7.4886 + + 1289 + NaN NaN 209809.4 NaN 11781 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15150 66.351 NaN 530470 35 0 45534 0.261 + 1459 AYSPRFLYI 9 72 565.3055500431743 1128.5965471531485 2 565.3059692382812 MULTI HCD FTMS 0 0 0 15148 216226.703125 0.22607159844678612 7 -0.17669677734375 2 Unmodified _AYSPRFLYI_ ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 61.357469665136826 0.01568246967499496 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3 6 41.254 0 0 3.6554 0 0 0 804.4406768070908 804.4406768070908 11.561734207603749 0 0 0 0 0.8494850021680094 2 0.3807196863200844 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S 3.6554 + + 130 + NaN NaN 181443 NaN 11782 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15151 66.355 NaN 402480 35 0 30893 0.261 + 13241 KYMDIEFDF 9 67 612.2680462198797 1222.5215395065593 2 612.2686157226562 MULTI HCD FTMS 0 0 0 15148 98158.421875 0.04548450774890582 25 -0.6474609375 3 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 41.95555342248728 0.056367691549927025 2 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 49.5 0 0 4.049 0 0 262.0953541486344 0 262.0953541486344 0 38.53108948155608 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.049 - 115 NaN NaN 162796.5 NaN 11783 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15152 66.358 NaN 231030 35 0 10182 0.261 + 6349 FPFYYEIKM 9 62 627.2987934101918 1252.5830338871835 2 627.298583984375 MULTI HCD FTMS 0 0 0 15148 69006.828125 0.05007120155002199 20 -0.500823974609375 4 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 47.594388314883695 0.03493607795751234 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F} 9 0 + 61.009 0 0 4.8706 4.8706 82.81 0 0 0 7.064083326475128 1.6722687557546578 1.6722687557546578 1.6722687557546578 0 2.309894379144197 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F} 4.8706;4.7371 +;+ + 114 + NaN NaN 128962.1 NaN 11784 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15153 66.362 NaN 310570 35 0 67921 0.264 + 23201 RFLNDPGHLLW 11 58 456.57865725541933 1366.714142366458 3 456.5788879394531 MULTI HCD FTMS 0 0 0 15148 50861.26171875 0.014388534754974508 46 -1.2389297485351562 5 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 14.837902256254086 0.32779928292324945 2 {I|L}W 2 9 25.969 0 0 1.9001 0 0 1049.5406815643514 0 1049.5406815643514 0 24.542425094393252 0 0 0 0.5 0 0 0 + {I|L}W 1.9001 + + 19 NaN NaN 141279.5 NaN 11785 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15154 66.365 NaN 293460 35 0 20604 0.261 -1 LGMDAGEMVIQ 11 75 598.2683832559968 1194.5222135787935 2 598.2679443359375 MULTI HCD FTMS 0 0 0 15148 23583.40625 0.35990551317226854 -3 0.0830535888671875 6 2 Oxidation (M) _LGM(Oxidation (M))DAGEM(Oxidation (M))VIQ_ ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;nc|ENSG00000155393|Q7Z4Q2-3|HEATR3 15.248480904072842 0.3242218977034194 2 {[QV]|[N{I|L}]|[RA]|[KV]}Y 3 -1 17.932 0 0 1.5012 0 0 0 801.3085654677185 801.3085654677185 0.4575749056067515 0 0 0 0 0 1.3979400086720375 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}Y 1.5012 - 42 NaN NaN 134296 NaN 11786 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15155 66.368 NaN 188670 35 0 8957.6 0.261 -1 KIPMMKALL 9 58 530.8180872997314 NaN 0 530.8186645507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _KIPM(Oxidation (M))MKALL_ ENSG00000114204|ENST00000264677|SERPINI2 7.289230182591677 0.2599242500475609 2 {M(Oxidation (M))|F}K 2 -1 10.969 0 0 1.0352 0 0 522.3282389531752 259.10932336978755 781.4375623229628 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}K 1.0352 + + 28 + NaN NaN 117591.6 NaN 11787 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15156 66.372 NaN 180790 35 0 10384 0.261 + 27526 TAAENEFVAL 10 65 532.7666789825668 1063.5188050319334 2 533.2279052734375 MULTI HCD FTMS 0 0 0 15148 22947.806640625 0.11663011766727635 13 -0.30492401123046875 8 Unmodified _TAAENEFVAL_ CON__O95678;ENSG00000170454|ENST00000252245|KRT75 8.155526934196011 0.43213520406898465 2 A{I|L} 2 8 25.969 0 0 2.4418 0 0 861.3870769585501 0 861.3870769585501 0 11.989700043360187 0 0 0 0.5 0 0 0 + A{I|L} 2.4418 + + 23 NaN NaN 121728.4 NaN 11788 3366 15148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15158 66.377 NaN 4003300 35 0 226410 0.327 + 27207 SYNNFFRMF 9 134 621.2737767427004 1240.5330005522007 2 621.2742309570312 MULTI HCD FTMS 0 0 0 15157 2329606.75 0.4218964167250947 3 -0.0786590576171875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 179.17365725063826 1.1335045685127237E-12 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 111.44 0 0 8.9832 0 0 0 208.03614221744377 208.03614221744377 78.26133523874674 0 0 0 0 2.504432191740108 2 1.1989700043360187 1.0044321917401078 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8.9832 - 12788 + NaN NaN 662261.1 NaN 11789 3367 15157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15159 66.381 NaN 618500 35 0 77369 0.261 -1 KYMDVQFDF 9 68 604.7681072670384 1207.5216616008768 2 604.7684936523438 MULTI HCD FTMS 0 0 0 15157 198110.515625 0.05783492555827191 47 -1.2718505859375 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 49.52724829834842 0.03223213920720493 2 PMN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 -1 58.906 0 0 4.8783 0 0 438.1933766095719 0 438.1933766095719 0 47.936909460092 0 0 0 1.8494850021680094 0 0 0.7302046884880937 PMN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8783 - 633 NaN NaN 189607.3 NaN 11790 3367 15157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15160 66.385 NaN 292520 35 0 80376 0.261 -1 MINRRHLV 8 45 527.8001685095187 1053.5857840858373 2 527.8001708984375 MULTI HCD FTMS 0 0 0 15157 69670.5234375 0.15784494320339199 3 -0.0786590576171875 3 Oxidation (M) _M(Oxidation (M))INRRHLV_ ENST00000427566.2_1_1:248100136-248100640:-|nuORF 10.183394434864962 0.5188676124868831 2 V{I|L} 2 -1 25.969 0 0 2.4648 0 0 823.4231718224514 0 823.4231718224514 0 10.484550065040281 0 0 0 0.5 0 0 0 V{I|L} 2.4648 - 11 NaN NaN 138186.3 NaN 11791 3367 15157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15161 66.388 NaN 308830 35 0 45019 0.261 + 16949 LYHLQPIF 8 61 515.7894929123447 1029.5644328914893 2 516.2744140625 MULTI HCD FTMS 0 0 0 15157 8664.2861328125 0.2540975028748477 6 -0.14720916748046875 4 Unmodified _LYHLQPIF_ REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1 26.34127834903884 0.3999841173197873 2 [Y{I|L}]V[C(Carbamidomethyl (C))H]VQ 7 -1 40.462 0 0 3.93 0 0 0 127.10201776469081 127.10201776469081 19.665310149266944 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 [Y{I|L}]V[C(Carbamidomethyl (C))H]VQ 3.93 - 214 NaN NaN 135010.2 NaN 11792 3367 15157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15162 66.391 NaN 140940 35 0 8072.6 0.261 + 18620 MWSTIDDSQI 10 59 598.2683832559968 1194.5222135787935 2 598.6588134765625 MULTI HCD FTMS 0 0 0 15157 9030.5546875 0.19942005012453498 3 -0.0786590576171875 5 Unmodified _MWSTIDDSQI_ ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF 12.240655878213236 0.39661705172222156 2 Q{I|L} 2 8 25.969 0 0 2.174 0 0 935.3685181924513 0 935.3685181924513 0 13.649706487232079 0 0 0 0.5 0 0 0 + Q{I|L} 2.174 + + 62 NaN NaN 109350.3 NaN 11793 3367 15157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15163 66.395 NaN 118370 35 0 6113.1 0.261 + 8171 GPQQQHWAI 9 68 532.7666789825668 1063.5188050319334 2 532.7669677734375 MULTI HCD FTMS 0 0 0 15157 27368.234375 0.10659857358732625 14 -0.32178497314453125 6 Unmodified _GPQQQHWAI_ REV__nc|ENSG00000211639|A0A075B6I1|IGLV4-60 7.289230182591677 0.29575926068275815 2 A{I|L} 2 -1 24.776 0 0 2.3297 0 0 861.3892527794521 0 861.3892527794521 0 21.677353201839438 0 0 0 0.3807196863200844 0 0 0 A{I|L} 2.3297 + + 9 NaN NaN 108838.3 NaN 11794 3367 15157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15165 66.399 NaN 2087000 35 0 309730 0.327 + 27538 TAAENEFVTL 10 103 547.7718074841189 1093.5290620350377 2 547.7720947265625 MULTI HCD FTMS 0 0 0 15164 1026441.4375 0.03738878024538784 21 -0.5329132080078125 1 Unmodified _TAAENEFVTL_ CON__P02538;CON__P04259;CON__P12035;CON__P48668;CON__P50446;ENSG00000170465|ENST00000252250|KRT6C;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;ENSG00000205420|ENST00000330722|KRT6A;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant 187.1423235319798 2.3722378751884736E-16 2 [TA]AENE{M(Oxidation (M))|F}VT{I|L} 10 0 + 94.518 0 0 8.6434 8.6434 88.625 0 0 0 0.695538464012543 16.53212513775344 0.695538464012543 0.695538464012543 0 2.811604235276773 0 1.5986198691406326 1.5044321917401078 + + [TA]AENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENE{M(Oxidation (M))|F}VT{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]NE{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]NE{M(Oxidation (M))|F}VT{I|L};[TA]AEGGE{M(Oxidation (M))|F}VT{I|L};{[TV]|[{I|L}S]}[DG]GGE{M(Oxidation (M))|F}VT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[HD]{M(Oxidation (M))|F}VT{I|L};{[CP]|[EA]}[TA]GGE{M(Oxidation (M))|F}VT{I|L};[TA]AENE{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L} 8.6434;8.5798;7.7377;7.5205;7.2211;6.4296;5.3066;5.1935;5.0073;4.4723 +;-;-;-;-;-;-;-;-;- + 1636 NaN NaN 411577.5 NaN 11795 3368 15164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15166 66.404 NaN 1656200 35 0 392290 0.261 + 32025 VYPLMKEYF 9 80 595.3017180042137 1188.5888830752274 2 595.3019409179688 MULTI HCD FTMS 0 0 0 15164 879666.4375 0.49530251937127906 4 -0.10816192626953125 2 Unmodified _VYPLMKEYF_ ENSG00000100109|ENST00000407690|TFIP11 55.50274090549119 0.023872834264864425 2 [YV]P{I|L}MKEY{M(Oxidation (M))|F} 9 0 + 88.719 0 0 7.4642 7.4642 92.075 0 0 0 23.738350322034222 16.478174818886373 16.478174818886373 9.843793236071363 0 2.1643943297944483 1.6989700043360187 0.3252574989159953 0 + + [YV]P{I|L}MKEY{M(Oxidation (M))|F};[YV]P{I|L}M{[SA]|[TG]}VY{M(Oxidation (M))|F};[{I|L}P][YV]MKEY{M(Oxidation (M))|F};VYP[EP]M{I|L}PP{M(Oxidation (M))|F};[YV]P{I|L}M[EP]PP{M(Oxidation (M))|F};[YV]P{I|L}[{I|L}A]{[CT]|[{M(Oxidation (M))|F}G]}Y{M(Oxidation (M))|F};[{I|L}P][YV]M[EP]PP{M(Oxidation (M))|F};[{I|L}P][YV]M{[SA]|[TG]}VY{M(Oxidation (M))|F};VYP[YV]{M(Oxidation (M))|F}[VG][{M(Oxidation (M))|F}V];VYP[RN]{[CP]|[EA]}NN{I|L} 7.4642;6.636;5.467;5.4207;5.1637;4.9103;4.6592;4.6388;2.9395;2.583 +;-;-;-;-;-;-;-;-;- + 966 NaN NaN 351428.7 NaN 11796 3368 15164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15167 66.407 NaN 1995300 35 0 123870 0.261 + 5946 FPDPNVKYVF 10 117 613.3165566237965 1224.6185603143929 2 613.3167724609375 MULTI HCD FTMS 0 0 0 15164 863979.875 0.6415541082092714 -1 0.02286529541015625 3 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 80.23954778395604 0.00545238089225479 2 [DP]{M(Oxidation (M))|F}PNVKYV 9 3 67.86 0 0 5.5413 0 0 0 162.05245975111453 162.05245975111453 14.039017971207016 0 0 0 0 2.048455006504028 1.154901959985743 0.9049471895720984 1.1080670093629827 [DP]{M(Oxidation (M))|F}PNVKYV 5.5413 - 5751 NaN NaN 408999 NaN 11797 3368 15164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15168 66.411 NaN 522980 35 0 101180 0.261 -1 EVMAMFEQM 9 99 574.2273512979058 1146.4401496626115 2 574.2275390625 MULTI HCD FTMS 0 0 0 15164 65395.3125 0.02759777391540676 21 -0.5329132080078125 4 2 Oxidation (M) _EVMAM(Oxidation (M))FEQM(Oxidation (M))_ ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000588422.3_1_19:39109887-39111017:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF 3.5964929083625545 0.32375295897743744 2 [Y{I|L}]{I|L}{I|L} 4 -1 26.287 0 0 2.2929 0 0 0 641.104065028099 641.104065028099 11.593793813122062 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L}{I|L} 2.2929 - 394 NaN NaN 169647.9 NaN 11798 3368 15164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15169 66.414 NaN 224170 35 0 26723 0.261 + 24993 RYVIIPTTF 9 50 555.3207638457669 1108.6269747583337 2 555.32177734375 MULTI HCD FTMS 0 0 0 15164 18493.400390625 0.47520575340667254 -1 0.02286529541015625 5 Unmodified _RYVIIPTTF_ ENSG00000149260|ENST00000648180|CAPN5;ENST00000527129.1_1_11:76831698-76834913:+|nuORF 18.1463463914782 0.20357593197100715 2 T{M(Oxidation (M))|F} 2 7 21.682 0 0 1.9558 0 0 842.5051136701187 0 842.5051136701187 0 12.078343878162343 0 0 0 0.3494850021680094 0 0.5 0 + T{M(Oxidation (M))|F} 1.9558 + + 14 NaN NaN 124136.5 NaN 11799 3368 15164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15170 66.417 NaN 149440 35 0 8990.1 0.261 -1 RVFWRPHNMDF 11 59 507.5779326170715 NaN 0 507.7427062988281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _RVFWRPHNM(Oxidation (M))DF_ ENST00000578759.1_1_17:60214444-60217453:-|nuORF 1.4551175022131473 0.3379923941668102 2 ET 2 -1 5.5732 0 0 0.55009 0 0 242.681303611293 537.3552340143186 780.0365376256116 0 0 0 0 0 0 0 0 0 ET 0.55009 - 4 + NaN NaN 109046.3 NaN 11800 3368 15164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15172 66.422 NaN 2029700 35 0 236840 0.327 + 34320 YPDTDVILM 9 95 541.7574483420049 1081.5003437508096 2 541.7577514648438 MULTI HCD FTMS 0 0 0 15171 762912.4375 1 0 0 1 Oxidation (M) _YPDTDVILM(Oxidation (M))_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC 57.47134341890925 0.0211188941628804 2 EV{I|L}{I|L}{M(Oxidation (M))|F} 5 5 55.767 0 0 5.1565 0 0 462.1848316876969 0 462.1848316876969 0 17.57080068355104 0 0 0 1.8494850021680094 0 0.9559771852360797 0 EV{I|L}{I|L}{M(Oxidation (M))|F} 5.1565 - 1936 NaN NaN 406809.5 NaN 11801 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15173 66.427 NaN 694560 35 0 45218 0.261 + 34340 YPEEFEKLL 9 95 584.3002245455127 1166.5858961578253 2 584.3004150390625 MULTI HCD FTMS 0 0 0 15171 606494.4375 0.9501480066879127 5 -0.1312408447265625 2 Unmodified _YPEEFEKLL_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 107.09958533191995 0.0034159042678574016 2 YPEE{M(Oxidation (M))|F}EK{I|L}{I|L} 9 0 + 104.81 0 0 8.9842 8.9842 91.75 0 0 0 7.308233432700575 7.308233432700575 7.308233432700575 7.308233432700575 0 3.1237125054200234 1.5228787452803376 0.9749073637206092 0 + + YPEE{M(Oxidation (M))|F}EK{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}EK{I|L}{I|L};[EP]YE{M(Oxidation (M))|F}EK{I|L}{I|L};YP{M(Oxidation (M))|F}EEEK{I|L}{I|L};[EP]EY{M(Oxidation (M))|F}EK{I|L}{I|L};YP[K{I|L}]{M(Oxidation (M))|F}EEE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE{M(Oxidation (M))|F}[K{I|L}]E{I|L};YPEE{I|L}{I|L}YQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EE[Q{I|L}]{I|L}Y{I|L} 8.9842;8.3578;6.3471;6.1284;5.8321;5.8059;5.6014;5.415;4.961;4.9501 +;+;-;-;-;-;-;-;-;- + 1710 + NaN NaN 191546.3 NaN 11802 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15174 66.43 NaN 497890 35 0 29816 0.261 + 2921 DYSPYFKTI 9 93 567.2792195549672 1132.5438861767343 2 567.2793579101562 MULTI HCD FTMS 0 0 0 15171 365442.90625 0.017380830265252455 131 -3.5224227905273438 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 76.82478488871298 0.006879825292024087 2 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 7 4 57.243 0 0 5.0544 0 0 0 229.11936365299064 229.11936365299064 21.5244949760919 0 0 0 0 1.274227503252014 1.6989700043360187 0.6549471895720984 0 M{M(Oxidation (M))|F}SPY{M(Oxidation (M))|F}K 5.0544 - 994 + NaN NaN 166831.2 NaN 11803 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15175 66.434 NaN 280600 35 0 25341 0.261 + 35802 YYPEHFTLL 9 59 591.7949992847066 1181.575445636213 2 592.2816772460938 MULTI HCD FTMS 0 0 0 15171 51872.265625 0.33613211822592265 12 -0.27600860595703125 4 Unmodified _YYPEHFTLL_ ENSG00000100065|ENST00000251973|CARD10 7.910154910731844 0.2910521888787154 2 V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L} 5 6 11.695 0 0 0.98975 0 0 130.12220013087727 515.1763399713499 645.2985401022272 0 0 0 0 0 0 0 0.4247425010840047 0 V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L} 0.98975 - 23 + NaN NaN 142125.8 NaN 11804 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15176 66.437 NaN 295210 35 0 12010 0.261 + 6350 FPFYYEIKM 9 58 627.2987934101918 1252.5830338871835 2 627.2991333007812 MULTI HCD FTMS 0 0 0 15171 91254.03125 0.06621372283180499 23 -0.6051712036132812 5 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 51.41523569358685 0.02959097413485123 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 58.572 0 0 4.6761 4.6761 82.956 0 0 0 2.570071809000602 2.570071809000602 2.570071809000602 2.570071809000602 0 2.128144697160131 0 0 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[HG]|PP}VN{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[HG]|PP}V{I|L}EY{M(Oxidation (M))|F}NK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{[DS]|[MA]|[CV]|TT}{[MG]|[TS]}P[DP];{[HG]|PP}V{I|L}EY{M(Oxidation (M))|F}GGK{M(Oxidation (M))|F} 4.6761;4.4709;4.3609;3.8212;1.2826;1.2078;1.1476;0.47613 +;-;+;-;-;-;-;- + 359 + NaN NaN 135997.9 NaN 11805 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15177 66.44 NaN 149530 35 0 14127 0.262 + 16184 LPVHVFEAL 9 51 512.7947538333742 1023.5749547335485 2 512.7955322265625 MULTI HCD FTMS 0 0 0 15171 70817.4765625 0.20594838656322106 10 -0.2296600341796875 6 Unmodified _LPVHVFEAL_ ENSG00000100982|ENST00000372409|PCIF1 16.942295170755138 0.21397866736869717 2 {M(Oxidation (M))|F}EA{I|L} 4 5 36.414 0 0 3.5576 0 0 545.3320179669937 0 545.3320179669937 0 24.731975075880328 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}EA{I|L} 3.5576 + + 28 NaN NaN 129627.8 NaN 11806 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15178 66.444 NaN 100860 35 0 19379 0.261 + 7934 GDPSLYFQKTF 11 36 434.88225736221005 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 15171 38644.2265625 0.4538365292980328 19 -0.48294830322265625 7 Unmodified _GDPSLYFQKTF_ ENSG00000135828|ENST00000367559|RNASEL 1.3296431237094175 0.3383483288439026 2 Y 1 10 5.4846 0 0 0.63204 0 0 72.40298182989689 629.2640474908811 701.667029320778 0 0 0 0 0 0 0 0 0 + Y 0.63204 + + 1 + NaN NaN 98867.5 NaN 11807 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15179 66.447 NaN 105460 35 0 12031 0.261 -1 MRRSMKRRRRR 11 41 554.984388805299 NaN 0 554.9265747070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))RRSM(Oxidation (M))KRRRRR_ ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L 0 0.34212014346876374 2 R 1 -1 6.9897 0 0 0.63087 0 0 707.6751081601883 241.15564905338127 948.8307572135695 0 0 0 0 0 0 0 0 0 R 0.63087 + + 8 + NaN NaN 100746.1 NaN 11808 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15180 66.45 NaN 175350 35 0 45357 0.262 + -1 RCQRIYGRVF 10 47 452.2430108583163 1353.707203175149 3 452.2435302734375 MULTI HCD FTMS 0 0 0 15171 26515.75390625 0.19734102002135273 -7 0.197784423828125 9 Carbamidomethyl (C) _RC(Carbamidomethyl (C))QRIYGRVF_ REV__nc|ENSG00000228741|Q96N96-5|SPATA13 1.7422754331352037 0.46608156381052757 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9184 0 0 1089.5614170339006 0 1089.5614170339006 0 25.969100130080562 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.9184 + + 2 NaN NaN 124252.7 NaN 11809 3369 15171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15182 66.455 NaN 1712100 35 0 268480 0.327 + 12840 KYFEVPSVL 9 100 541.3001371184171 1080.585721303634 2 541.30029296875 MULTI HCD FTMS 0 0 0 15181 583824.5 0.5904739750515493 -3 0.0786590576171875 1 Unmodified _KYFEVPSVL_ ENSG00000131966|ENST00000254286|ACTR10 65.47368725323818 0.010552856507075443 2 [Y{M(Oxidation (M))|F}]KEVPSV{I|L} 9 2 + 61.313 0 0 5.674 5.674 83.529 0 0 0 0.26802492411967194 8.906877742051762 0.26802492411967194 0.26802492411967194 0 2.0387254899964358 0 0.7614393726401688 0 [Y{M(Oxidation (M))|F}]KEVPSV{I|L};[YK]{M(Oxidation (M))|F}EVPSV{I|L};[{I|L}T]{[TV]|[{I|L}S]}[WY]SV{I|L};[{I|L}T]{[TV]|[{I|L}S]}V{[{M(Oxidation (M))|F}C]|[YS]}W{I|L};[{I|L}T][Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}SV{I|L};[YV]{I|L}[YQ]PSV{I|L} 5.674;5.6492;3.4088;3.4047;1.6589;1.4749 -;+;-;-;-;- + 1590 NaN NaN 345302.6 NaN 11810 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15183 66.46 NaN 613420 35 0 197650 0.261 -1 TAMDVVYAL 9 43 499.74673630115075 997.4789196691015 2 499.7469177246094 MULTI HCD FTMS 0 0 0 15181 261711.71875 0.3206706688462392 -13 0.34490966796875 2 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 36.04419817259434 0.08350412372117409 2 VYA{I|L} 4 -1 45.745 0 0 4.5861 0 0 533.2153427817883 0 533.2153427817883 0 40.26084705832169 0 0 0 1.3807196863200843 0 0 0 VYA{I|L} 4.5861 + + 22 NaN NaN 177092.7 NaN 11811 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15184 66.463 NaN 294230 35 0 37667 0.261 -1 FPAGYMYPSM 10 58 590.2460169250976 1178.477480916995 2 590.2461547851562 MULTI HCD FTMS 0 0 0 15181 164433.953125 0.8259462759175272 1 -0.026153564453125 3 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 26.88365393820708 0.25965138844209146 2 W{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 4 -1 38.175 0 0 3.2394 0 0 0 532.220486525333 532.220486525333 16.735162698957282 0 0 0 0 0.9247425010840047 0 0 0 W{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3.2394 - 153 + NaN NaN 135958.4 NaN 11812 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15185 66.466 NaN 62884 35 0 6401.8 0.264 + 12500 KRLILLIQKK 10 39 418.29741609961656 NaN 0 418.29730224609375 PEAK HCD FTMS 0 0 0 15181 62516.75390625 0.721691460195719 1 -0.026153564453125 4 Unmodified _KRLILLIQKK_ REV__ENST00000354566.7_1_11:85436805-85436946:-|nuORF 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100143.3 NaN 11813 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15186 66.47 NaN 221660 35 0 47903 0.261 + 28121 TIKGFQQIL 9 49 524.3134853725322 1046.6124178118644 2 524.3131713867188 MULTI HCD FTMS 0 0 0 15181 33555.93359375 0.36412385685674015 -3 0.0786590576171875 5 Unmodified _TIKGFQQIL_ ENSG00000110955|ENST00000262030|ATP5F1B 13.90604991867851 0.24021115267848145 2 {I|L}{I|L} 2 7 25.969 0 0 2.4813 0 0 802.4341405531308 0 802.4341405531308 0 11.365006360318688 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.4813 + + 11 NaN NaN 136918.8 NaN 11814 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15187 66.473 NaN 140430 35 0 55554 0.261 + 15937 LPPEGPESL 9 41 469.7449517076951 937.4753504821903 2 469.74505615234375 MULTI HCD FTMS 0 0 0 15181 18816.5703125 0.2603080438104831 6 -0.1378326416015625 6 Unmodified _LPPEGPESL_ REV__ENSG00000167548|ENST00000301067|KMT2D;REV__KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;REV__KMT2D|p.F2739Lfs*18|1|0.26|ENSG00000167548|chr12:49039450-49039450|G/-|frameshift_variant;REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__KMT2D|p.K1466Qfs*25|1|0.1|ENSG00000167548|chr12:49046631-49046632|-/G|frameshift_variant;REV__KMT2D|p.K2548Tfs*103|1|0.15|ENSG00000167548|chr12:49040117-49040127|GACAGGGGGCT/-|frameshift_variant;REV__KMT2D|p.L1032Pfs*33|1|0.25|ENSG00000167548|chr12:49050486-49050493|GGGAACCA/-|frameshift_variant;REV__KMT2D|p.L1461Tfs*30|1|0.19|ENSG00000167548|chr12:49046647-49046648|-/G|frameshift_variant;REV__KMT2D|p.P2218Lfs*46|1|0.22|ENSG00000167548|chr12:49041117-49041117|G/-|frameshift_variant;REV__KMT2D|p.P3156Afs*20|1|0.6|ENSG00000167548|chr12:49037891-49037892|-/T|frameshift_variant;REV__KMT2D|p.Q1035Pfs*33|1|0.37|ENSG00000167548|chr12:49050484-49050485|-/G|frameshift_variant;REV__KMT2D|p.Q3158Pfs*2|1|0.25|ENSG00000167548|chr12:49037880-49037883|CTCT/-|frameshift_variant;REV__KMT2D|p.R2282Gfs*4|1|0.15|ENSG00000167548|chr12:49040926-49040926|G/-|frameshift_variant;REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;REV__KMT2D|p.S2512Ifs*26|1|0.55|ENSG00000167548|chr12:49040220-49040235|TTGGGGGGCTGCCCAC/-|frameshift_variant;REV__KMT2D|p.T3053Yfs*2|1|0.34|ENSG00000167548|chr12:49038199-49038200|-/A|frameshift_variant;REV__KMT2D|p.V1244Gfs*6|1|0.24|ENSG00000167548|chr12:49049857-49049858|-/C|frameshift_variant;REV__KMT2D|p.V3089Wfs*30|2|0.5|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D 7.910154910731844 0.2910521888787154 2 E{NN|[MP]|[D{I|L}]|[EV]}{[CA]|SS}{I|L} 6 -1 7.2802 0 0 0.77657 0 0 275.17122084785314 0 275.17122084785314 0 7.280156171532186 0 0 0 0 0 0 0 E{NN|[MP]|[D{I|L}]|[EV]}{[CA]|SS}{I|L} 0.77657 - 10 NaN NaN 109091.3 NaN 11815 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15188 66.476 NaN 132720 35 0 7269 0.261 + 3545 EIPCGDIRL 9 51 508.2671666702407 NaN 0 508.3003234863281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EIPCGDIRL_ ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4 3.944395688203298 0.27613285122220627 2 PE 2 8 10.969 0 0 1.0812 0 0 147.00426396236486 638.4015596979124 785.4058236602773 0 0 0 0 0 0 0 0 0 PE 1.0812 - 9 + NaN NaN 106554 NaN 11816 3370 15181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15190 66.481 NaN 2549700 35 0 417790 0.327 + -1 NYAELLCVNH 10 105 616.790361248611 1231.566169564022 2 616.7906494140625 MULTI HCD FTMS 0 0 0 15189 407111.28125 0.4646333221225057 2 -0.04239654541015625 1 Carbamidomethyl (C) _NYAELLC(Carbamidomethyl (C))VNH_ REV__ENSG00000276023|ENST00000617516|DUSP14 39.94969957227396 0.1458432724694501 2 NYASCV 6 -1 68.37 0 0 5.5514 0 0 0 591.2572094665352 591.2572094665352 42.30688313432394 0 0 0 0 1.6549471895720984 1.6989700043360187 0.6694451763165201 0 NYASCV 5.5514 - 1025 + NaN NaN 483194.6 NaN 11817 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15191 66.486 NaN 493140 35 0 49799 0.261 + 32827 WVDEMQVQL 9 70 582.2734098437274 1162.5322667542548 2 582.2740478515625 MULTI HCD FTMS 0 0 0 15189 169697.625 0.4213709708708031 2 -0.04239654541015625 2 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 66.45667989310934 0.010234776021261575 2 {[RE]|[WV]}DE{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 72.145 0 0 6.2059 6.2059 88.881 0 0 0 3.65279269351241 58.33281569033012 3.65279269351241 9.208187539523749 0 1.9247425010840047 0 0.2742275032520141 0.7302046884880937 + + {[RE]|[WV]}DE{M(Oxidation (M))|F}QVQ{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}[AG]VQ{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}QV[AG]{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}[AG]V[AG]{I|L} 6.2059;5.4138;5.4138;4.6255 +;-;-;- + 160 NaN NaN 159224.1 NaN 11818 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15192 66.489 NaN 808260 35 0 92084 0.261 + 11251 IYLLIHNNF 9 97 573.8185211900951 1145.6224894469901 2 573.8192138671875 MULTI HCD FTMS 0 0 0 15189 178772.8125 0.3649032141191869 -7 0.1978607177734375 3 Unmodified _IYLLIHNNF_ ENSG00000143119|ENST00000271324|CD53;ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF 109.62928328672726 0.0030029239606406397 2 {I|L}Y{I|L}{I|L}[HQ]VN{M(Oxidation (M))|F} 9 2 + 70.733 0 0 6.1742 6.1742 84.603 0 0 0 0.9367923279204717 0.9367923279204717 0.9367923279204717 0.9367923279204717 0 2.111407999752478 1.6989700043360187 0 0.8807196863200843 {I|L}Y{I|L}{I|L}[HQ]VN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HNN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HGGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HNGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}[HQ]VN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HGGGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}[HQ]VGG{M(Oxidation (M))|F} 6.1742;6.0925;5.2887;5.2887;4.6985;4.1837;3.8947 -;+;-;-;-;-;- + 1229 + NaN NaN 214417.6 NaN 11819 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15193 66.493 NaN 333200 35 0 21656 0.261 + 15671 LPEKLTIYTTL 11 58 646.3790309857881 1290.743509038376 2 646.379150390625 MULTI HCD FTMS 0 0 0 15189 57409.546875 0.3394040742962181 2 -0.04239654541015625 4 Unmodified _LPEKLTIYTTL_ ENSG00000136937|ENST00000375147|NCBP1 17.86316937532769 0.30144003132722086 2 {M(Oxidation (M))|F}EY{I|L}YT[{I|L}T] 8 5 33.792 0 0 2.618 0 0 242.19869231746844 0 242.19869231746844 0 19.634928107446186 0 0 0 1.5682503180159344 0 0.3494850021680094 0 {M(Oxidation (M))|F}EY{I|L}YT[{I|L}T] 2.618 - 174 + NaN NaN 147503.9 NaN 11820 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15194 66.496 NaN 214490 35 0 26522 0.264 + 25945 SPDAPDFQL 9 57 495.2319548715549 988.4493568099098 2 495.2323913574219 MULTI HCD FTMS 0 0 0 15189 43118.2109375 0.3870491885133765 -5 0.13430023193359375 5 Unmodified _SPDAPDFQL_ ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF 34.40172386719151 0.0910440009062557 2 PD{M(Oxidation (M))|F}Q{I|L} 5 4 37.017 0 0 3.7449 0 0 370.14839369941564 0 370.14839369941564 0 12.314309196763702 0 0 0 0.7887254899964358 0 0.5941876774005248 0 + PD{M(Oxidation (M))|F}Q{I|L} 3.7449 + + 66 NaN NaN 122251 NaN 11821 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15195 66.499 NaN 255870 35 0 17469 0.261 + 10046 IFDQSGTYL 9 72 522.2557537924507 1042.4969546517013 2 522.2557373046875 MULTI HCD FTMS 0 0 0 15189 68105.2421875 0.12113640625863278 -7 0.1978607177734375 6 Unmodified _IFDQSGTYL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 72.96794272382148 0.008127836904478181 2 {[{M(Oxidation (M))|F}D]|MM}{I|L}QSGTY{I|L} 9 2 + 75.657 0 0 7.2573 7.2573 86.497 0 0 0 0.7918124604762511 16.478174818886373 0.7918124604762511 0.7918124604762511 0 1.7614393726401687 0 0.8494850021680094 0.6694451763165201 {[{M(Oxidation (M))|F}D]|MM}{I|L}QSGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQSGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}[AG]SGTY{I|L};[YK][DP]SGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[AG]SGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}QS{[CA]|SS}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQS{[CA]|SS}{M(Oxidation (M))|F}{I|L};[YV]N[DV]GTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}Q{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}[AG]S{[CA]|SS}{M(Oxidation (M))|F}{I|L} 7.2573;7.1813;5.7319;5.7077;5.6559;4.2562;4.1802;3.4933;3.1552;3.0077 -;+;-;-;-;-;-;-;-;- + 679 NaN NaN 132899.5 NaN 11822 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15196 66.503 NaN 74941 35 0 12676 0.261 + 15138 LMNVFIQP 8 49 481.2617643358986 NaN 0 480.7769775390625 PEAK HCD FTMS 0 0 0 15189 10045.828125 0.19562955159955234 -2 0.0590362548828125 7 Unmodified _LMNVFIQP_ REV__ARMC8|p.K242N|1|0.17|ENSG00000114098|chr3:138237522-138237522|G/T|missense_variant 5.230669730166228 0.38822285293237185 2 T 1 -1 5.4846 0 0 0.571 0 0 379.19600074035344 477.2311190240844 856.4271197644379 0 0 0 0 0 0 0 0 0 T 0.571 - 3 + NaN NaN 100332.1 NaN 11823 3371 15189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15198 66.508 NaN 1956700 35 0 233460 0.327 + 12756 KYDEIFYNL 9 104 602.7977562185981 1203.5809595039962 2 602.7984619140625 MULTI HCD FTMS 0 0 0 15197 1326344.75 0.1658727956282994 -6 0.16051483154296875 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 128.93241758739586 0.0006697181619526092 2 {NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L} 9 4 + 86.525 0 0 7.189 7.189 86.421 0 0 0 5.798729351435114 16.478174818886373 5.798729351435114 0.9632725626592133 0 2.274227503252014 0 1.5356668758921828 0.7614393726401688 {NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[SG]{I|L}{M(Oxidation (M))|F}YN{I|L} 7.189;7.109;7.1085;6.8181;6.7072;6.6993;6.4361;6.4239;6.3787;6.3561 -;-;-;-;+;-;-;-;-;- + 19050 NaN NaN 388265.3 NaN 11824 3372 15197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15199 66.512 NaN 406570 35 0 39044 0.261 -1 KYMDINFDF 9 69 604.7681072670384 1207.5216616008768 2 605.7723999023438 MULTI HCD FTMS 0 0 0 15197 41120.0390625 0.049445766706268136 52 -1.4427032470703125 2 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 19.361941925380144 0.1930734562688509 2 D{M(Oxidation (M))|F}[EP]Q{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 -1 35.406 0 0 2.9321 0 0 164.07671273748912 0 164.07671273748912 0 24.463950151760656 0 0 0 0.8494850021680094 0 0.4247425010840047 0.4247425010840047 D{M(Oxidation (M))|F}[EP]Q{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.9321 - 130 + NaN NaN 148911.4 NaN 11825 3372 15197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15200 66.515 NaN 188210 35 0 47433 0.264 + 23202 RFLNDPGHLLW 11 52 456.57865725541933 1366.714142366458 3 456.5788879394531 MULTI HCD FTMS 0 0 0 15197 34828.40234375 0.009852875462555446 52 -1.4427032470703125 3 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 11.065280125700339 0.3606702632373656 2 {I|L}W 2 9 25.217 0 0 1.845 0 0 1049.5370108752634 0 1049.5370108752634 0 12.117581349478641 0 0 0 0.4247425010840047 0 0 0 + {I|L}W 1.845 + + 22 NaN NaN 114503.2 NaN 11826 3372 15197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15201 66.519 NaN 95346 35 0 6192.5 0.261 + 20286 NYNAYESYKYP 11 53 471.2093457621179 1410.6062078865536 3 471.20941162109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NYNAYESYKYP_ CCND1-FGF4|1|fusion;ENSG00000075388|ENST00000168712|FGF4 2.2527281973983926 0.4090409658946738 2 [YN]AWV 5 8 38.156 0 0 2.7049 0 0 0 774.293731367552 774.293731367552 22.67097795568553 0 0 0 0 1.1677353201839438 2 0 0 [YN]AWV 2.7049 - 38 + NaN NaN 129531 NaN 11827 3372 15197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15203 66.524 NaN 3704300 35 0 206180 0.325 + 27208 SYNNFFRMF 9 120 621.2737767427004 1240.5330005522007 2 621.2741088867188 MULTI HCD FTMS 0 0 0 15202 2512956.25 0.4551013759133086 9 -0.19695281982421875 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 109.34 0 0 8.8136 0 0 0 208.03635584049064 208.03635584049064 70.10771078529845 0 0 0 0 2.360924374808178 2 1.2753187046026264 0.7302046884880937 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8.8136 - 8466 + NaN NaN 604449.8 NaN 11828 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15204 66.528 NaN 934130 35 0 109090 0.261 -1 KYMDVQFDF 9 90 604.7681072670384 1207.5216616008768 2 604.7684326171875 MULTI HCD FTMS 0 0 0 15202 243018.65625 0.07094507754497203 53 -1.4788589477539062 2 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 45.739877483867886 0.03899552410870734 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 53.047 0 0 4.3931 0 0 666.3034782459006 0 666.3034782459006 0 21.955006527425095 0 0 0 1.4247425010840047 0 0 0.6861818737241735 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.3931 - 1706 NaN NaN 246757.8 NaN 11829 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15205 66.532 NaN 621110 35 0 84657 0.261 + 5204 FFDAELSQM 9 80 552.2391290246032 1102.4637051160064 2 552.2391357421875 MULTI HCD FTMS 0 0 0 15202 277584.5 0.07710241500136798 57 -1.5633697509765625 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 118.0683919894846 0.0016252157255221692 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 82.541 0 0 7.487 7.487 91.182 0 0 0 3.65279269351241 72.95421212063953 3.65279269351241 9.208187539523749 0 2.7302046884880937 0 1.4604093769761874 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SM[SG];{[QV]|[N{I|L}]|[RA]|[KV]}{[YC]|[HE]}EADE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}ADE{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP] 7.487;6.6517;5.4433;3.2314;2.068;1.9547;1.7258 +;-;-;-;-;-;- + 802 NaN NaN 179866 NaN 11830 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15206 66.535 NaN 1007300 35 0 159340 0.261 + 35574 YYIDKLEYL 9 88 610.3158416599185 1218.617130386637 2 610.3160400390625 MULTI HCD FTMS 0 0 0 15202 577748.375 0.2092604862119046 -5 0.1243438720703125 4 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 107.09958533191995 0.0034159042678574016 2 YY{I|L}DK{I|L}EY{I|L} 9 0 + 95.166 0 0 7.8093 7.8093 93.707 0 0 0 2.759621790487685 2.759621790487685 2.759621790487685 14.035984316004217 0 3.004432191740108 2 1.3851518780601921 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK{I|L}E{I|L}Y;YY{I|L}DK[YE]{I|L}{I|L};YY{I|L}EY{I|L}DK{I|L};YY{I|L}EY{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}EY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YE{I|L}YY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}E{I|L}Y;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YE{I|L}Y{I|L}Y;{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY[YE]{I|L}{I|L} 7.8093;6.6575;5.5077;5.3796;4.582;4.2784;3.494;3.3531;2.5686;2.2033 +;-;-;-;-;-;-;-;-;- + 1032 + NaN NaN 243188.5 NaN 11831 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15207 66.539 NaN 234100 35 0 41619 0.262 + -1 KNRCVNQL 8 53 516.2740415244949 1030.5335301157897 2 516.2745971679688 MULTI HCD FTMS 0 0 0 15202 162002.4375 0.7068546484504347 4 -0.09221649169921875 5 Carbamidomethyl (C) _KNRC(Carbamidomethyl (C))VNQL_ REV__ENST00000083182.7_1_17:58524734-58524857:-|nuORF 16.942295170755138 0.46913822049235215 2 VQ{I|L} 3 -1 30.445 0 0 2.9543 0 0 672.3112605696762 0 672.3112605696762 0 9.960762528683702 0 0 0 0.4247425010840047 0 0 0 VQ{I|L} 2.9543 - 54 NaN NaN 141967.6 NaN 11832 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15208 66.542 NaN 436110 35 0 23717 0.261 + 31778 VYLQNWSHVL 10 92 629.8332430730198 1257.6519332128396 2 630.3363037109375 MULTI HCD FTMS 0 0 0 15202 62815.00390625 0.691875026191675 3 -0.06928253173828125 6 Unmodified _VYLQNWSHVL_ ENSG00000169727|ENST00000578552|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098|GPS1 59.012897905743536 0.04501161496281133 2 [YV]{I|L}QNWSVH{I|L} 10 2 + 90.372 0 0 7.1857 7.1857 89.928 0 0 0 49.39816318774563 8.507112333562858 8.507112333562858 9.164539485499262 0 2.412437995416459 1.6989700043360187 0.3054621874040891 0.3807196863200844 [YV]{I|L}QNWSVH{I|L};[YV]{I|L}[AG]NWSVH{I|L};[YV]{I|L}QGGWSVH{I|L};[YV]{I|L}QHYSHV{I|L};[YV]{I|L}QHNQ{I|L}M{I|L};[YV]{I|L}QHYSVH{I|L};[YV]{I|L}[AG]GGWSVH{I|L};[YV]{I|L}QHW[NS]V{I|L};[YV]{I|L}QH[VS]YH{I|L};[YV]{I|L}QHN[AG]{I|L}M{I|L} 7.1857;6.457;6.457;5.8957;5.8436;5.7771;5.4285;5.3613;5.2427;5.1149 -;-;-;-;-;-;-;-;-;- 1435 + NaN NaN 156564 NaN 11833 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15209 66.545 NaN 329880 35 0 21510 0.261 + 3634 ELFEVDVEIAK 11 68 646.342501351016 1290.670449768832 2 646.3435668945312 MULTI HCD FTMS 0 0 0 15202 113090.6875 1 0 0 7 Unmodified _ELFEVDVEIAK_ ENST00000506450.1_1_4:25624416-25624897:+|nuORF 49.74193281347159 0.08247801322054248 2 {[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EVDVE 8 3 57.789 0 0 4.4775 0 0 0 327.20310388736567 327.20310388736567 25.47203955651574 0 0 0 0 1.0189301784845295 1.6989700043360187 0 0 + {[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}EVDVE 4.4775 + + 176 + NaN NaN 161221.2 NaN 11834 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15210 66.549 NaN 409580 35 0 37298 0.261 + 24821 RYPQSIFSTF 10 85 623.3163769019827 1244.6182008707653 2 624.318603515625 MULTI HCD FTMS 0 0 0 15202 115581.390625 1 0 0 8 Unmodified _RYPQSIFSTF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 26.020703789607367 0.2677231329712098 2 [YN]{I|L}[NP][YK]ST 9 7 28.407 0 0 2.2824 0 0 0 161.05334852509137 161.05334852509137 -1.0044784231460788 0 -1.0044784231460788 0 0 0.3494850021680094 1.3979400086720375 0.5 0.3054621874040891 [YN]{I|L}[NP][YK]ST 2.2824 - 324 NaN NaN 153175.6 NaN 11835 3373 15202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15212 66.553 NaN 1089900 35 0 228870 0.327 + -1 IPNDMEPIMI 10 83 594.7844176462197 1187.5542823592393 2 595.3020629882812 MULTI HCD FTMS 0 0 0 15211 17977.306640625 0.06862185786183381 -14 0.381439208984375 1 Oxidation (M) _IPNDM(Oxidation (M))EPIMI_ REV__tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1 15.847184025352803 0.36288280428275715 2 [YN]{M(Oxidation (M))|F}{I|L}CR{M(Oxidation (M))|F}M 8 -1 42.446 0 0 3.5742 0 0 0 110.05523385753932 110.05523385753932 15.090642074606603 0 0 0 0 1.25 1.3010299956639813 0 0.3807196863200844 [YN]{M(Oxidation (M))|F}{I|L}CR{M(Oxidation (M))|F}M 3.5742 - 724 NaN NaN 251308.7 NaN 11836 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15213 66.558 NaN 1505800 35 0 257220 0.261 + -1 NYAELLCVNH 10 94 616.790361248611 1231.566169564022 2 616.7901000976562 MULTI HCD FTMS 0 0 0 15211 229725.109375 0.26218369684115017 5 -0.098419189453125 2 Carbamidomethyl (C) _NYAELLC(Carbamidomethyl (C))VNH_ REV__ENSG00000276023|ENST00000617516|DUSP14 26.268140514670165 0.2654086933305545 2 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L} 9 -1 + 62.379 0 0 5.065 5.065 85.593 0 0 0 18.822450201455183 7.716525140920609 7.716525140920609 7.716525140920609 0 2.305462187404089 1.6989700043360187 0.3807196863200844 0.4247425010840047 NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VYYH{I|L};NY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VY{[QV]|[N{I|L}]|[RA]|[KV]}W;{[YD]|[{M(Oxidation (M))|F}M]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VY{[QV]|[N{I|L}]|[RA]|[KV]}W 5.065;4.4384;0.58822 -;-;- 363 + NaN NaN 315315.6 NaN 11837 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15214 66.562 NaN 251550 35 0 58766 0.261 + 32919 YAEYDLPAII 10 64 584.3002245455127 1166.5858961578253 2 585.2883911132812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YAEYDLPAII_ REV__ENSG00000143869|ENST00000272224|GDF7 10.823927491677226 0.4098686510432541 2 {I|L}{I|L} 2 -1 18.188 0 0 1.559 0 0 922.4036732404312 0 922.4036732404312 0 9.006375246153906 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.559 + + 45 NaN NaN 134702 NaN 11838 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15215 66.565 NaN 1157700 35 0 228980 0.263 + 20123 NYIPYLTKLKF 11 86 467.2707544193761 1398.7904338583282 3 467.27081298828125 MULTI HCD FTMS 0 0 0 15211 146159.40625 0.14158429556810465 -4 0.098358154296875 4 Unmodified _NYIPYLTKLKF_ ENSG00000205413|ENST00000379958|SAMD9 20.410884301107757 0.2792417076485638 2 NY{I|L}{M(Oxidation (M))|F} 4 7 54.68 0 0 3.9091 0 0 0 858.5022677057249 858.5022677057249 39.16123171170589 0 0 0 0 0.9247425010840047 2 0 0 NY{I|L}{M(Oxidation (M))|F} 3.9091 - 179 + NaN NaN 260477.6 NaN 11839 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15216 66.568 NaN 279390 35 0 17239 0.261 + 25566 SFSEYFGAI 9 63 510.73767500934207 1019.4607970854842 2 510.7381591796875 MULTI HCD FTMS 0 0 0 15211 56287.296875 0.33857208418730894 -9 0.23384857177734375 5 Unmodified _SFSEYFGAI_ ENSG00000085274|ENST00000349841|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-4|MYNN 11.640296217721598 0.25978676193971967 2 YA{I|L} 3 6 31.682 0 0 3.1078 0 0 654.265128947659 0 654.265128947659 0 0.40939380995489216 0 0 0 0.8494850021680094 0 0 0 YA{I|L} 3.1078 - 180 NaN NaN 131139.4 NaN 11840 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15217 66.572 NaN 372260 35 0 26377 0.261 + 6316 FPFREELL 8 71 525.7839531628871 1049.553353392574 2 525.784423828125 MULTI HCD FTMS 0 0 0 15211 81037.203125 0.5218046191508551 -4 0.098358154296875 6 Unmodified _FPFREELL_ ENSG00000204560|ENST00000376442|DHX16 36.12702656103203 0.2806826090546818 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}REE{M(Oxidation (M))|F}{I|L}{I|L} 8 2 + 51.846 0 0 4.9398 4.9398 85.025 0 0 0 20.969100130080562 30.27819381628923 20.969100130080562 6.7609125905568135 0 1 1.6989700043360187 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}REE{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}REE{I|L}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RHHP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}REE{I|L}{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RHH{M(Oxidation (M))|F}P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]{[ES]|[DT]|[{I|L}C]}M{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RHHP{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}R[{M(Oxidation (M))|F}V]W[KA];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RHH{[SA]|[TG]}[KA];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}T]{[MG]|[TS]}W[KA] 4.9398;4.2957;3.8411;3.649;3.3429;3.3159;3.1944;1.9879;0.9376;0.81856 -;-;-;-;-;-;-;-;-;- 292 NaN NaN 148826.7 NaN 11841 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15218 66.575 NaN 262500 35 0 10163 0.261 + 31812 VYMDWYEKF 9 60 648.7839342644693 NaN 0 648.7845458984375 PEAK HCD FTMS 0 0 0 15211 43588.74609375 0.4918066015603342 5 -0.098419189453125 7 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 53.31671820480216 0.03794897575274257 2 P{M(Oxidation (M))|F}DWYE 6 4 43.409 0 0 3.3506 0 0 165.07926882015096 290.15046106510005 455.229729885251 0 0 0 0 0 2.004432191740108 0 0 0 P{M(Oxidation (M))|F}DWYE 3.3506 - 84 + NaN NaN 122348.8 NaN 11842 3374 15211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15220 66.58 NaN 4843900 35 0 1003900 0.327 + 5947 FPDPNVKYVF 10 115 613.3165566237965 1224.6185603143929 2 613.3326416015625 MULTI HCD FTMS 0 0 0 15219 779170.125 0.5785780539016393 6 -0.11833953857421875 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 50.64776852458333 0.07543374181316939 2 AS{I|L}A{M(Oxidation (M))|F} 5 9 46.186 0 0 3.7714 0 0 717.3813177582006 0 717.3813177582006 0 -2.2552375961092324 -2.2552375961092324 0 0 0 0 1.4247425010840047 0 AS{I|L}A{M(Oxidation (M))|F} 3.7714 - 4570 NaN NaN 598459.2 NaN 11843 3375 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15221 66.584 NaN 738200 35 0 57469 0.261 + 20208 NYLHLDYNF 9 84 599.7803175023859 1197.5460820715716 2 599.7806396484375 MULTI HCD FTMS 0 0 0 15219 473430.03125 0.35273891301987087 -3 0.072418212890625 2 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 93.93812099017352 0.0044227730261779084 2 [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F} 9 0 + 96.83 0 0 8.0857 8.0857 91.534 0 0 0 14.329082696723361 12.385606273598299 12.385606273598299 9.208187539523735 0 2.4698565171985374 1.5228787452803376 0 0.7059771852360797 + + [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DYGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYN{M(Oxidation (M))|F};[YG]G{I|L}H{I|L}DYN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYGG{M(Oxidation (M))|F};[YN]{I|L}H{I|L}D{M(Oxidation (M))|F}[YN];[YG]G{I|L}H{I|L}DYGG{M(Oxidation (M))|F};[YN]{I|L}HY{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F};[YN]{I|L}[Y{I|L}][HD]N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}D{M(Oxidation (M))|F}[YN] 8.0857;7.3168;6.7244;6.2529;5.9555;5.3244;5.1697;4.8563;4.0502;3.9631 +;-;-;-;-;-;-;-;-;- + 1682 NaN NaN 200784.5 NaN 11844 3375 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15222 66.588 NaN 239400 35 0 42231 0.261 -1 QHIGNIFMF 9 58 561.7740547294646 1121.5335565257292 2 561.7745361328125 MULTI HCD FTMS 0 0 0 15219 31981.794921875 0.4171950136384042 2 -0.035980224609375 3 Oxidation (M) _QHIGNIFM(Oxidation (M))F_ ENSG00000213593|ENST00000278422|TMX2;TMX2-CTNND1|1|fusion;TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion 30.224811164608877 0.11021837014094292 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 33.188 0 0 2.9591 0 0 662.3521595685562 0 662.3521595685562 0 23.723637474483468 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9591 + + 39 NaN NaN 133190.1 NaN 11845 3375 15219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15224 66.593 NaN 1354600 35 0 426870 0.327 + 27686 TAMDVVYAL 9 54 499.74673630115075 997.4789196691015 2 499.7470703125 MULTI HCD FTMS 0 0 0 15223 694430.875 0.850873679701166 -7 0.17071533203125 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 50.855029805455786 0.030374663808198754 2 VYA{I|L} 4 5 46.186 0 0 4.6302 0 0 533.2152816067916 0 533.2152816067916 0 39.195925227640984 0 0 0 1.4247425010840047 0 0 0 + VYA{I|L} 4.6302 + + 46 NaN NaN 285688.8 NaN 11846 3376 15223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15225 66.597 NaN 1625100 35 0 252350 0.261 + 12841 KYFEVPSVL 9 101 541.3001371184171 1080.585721303634 2 541.3004760742188 MULTI HCD FTMS 0 0 0 15223 914702.875 0.9251208926523816 3 -0.0589447021484375 2 Unmodified _KYFEVPSVL_ ENSG00000131966|ENST00000254286|ACTR10 65.47368725323818 0.010552856507075443 2 [YK]{M(Oxidation (M))|F}EVPSV{I|L} 9 0 + 63.883 0 0 5.9119 5.9119 83.819 0 0 0 0.06961951313705583 10.839088964401 0.06961951313705583 0.06961951313705583 0 2.2887254899964358 0 0.805462187404089 0 + + [YK]{M(Oxidation (M))|F}EVPSV{I|L};[Y{M(Oxidation (M))|F}]KEVPSV{I|L};[YV]{I|L}[YQ]PSV{I|L};[{I|L}T]{[TV]|[{I|L}S]}V{[{M(Oxidation (M))|F}C]|[YS]}W{I|L};[{I|L}T]{[TV]|[{I|L}S]}[WY]SV{I|L};[Y{M(Oxidation (M))|F}][{I|L}A][TA]PSV{I|L};[{I|L}T][Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}SV{I|L} 5.9119;5.9054;4.5941;3.5966;3.4785;2.6513;1.8813 +;-;-;-;-;-;- + 1207 NaN NaN 331750.3 NaN 11847 3376 15223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15226 66.601 NaN 609910 35 0 41262 0.261 + 2806 DYILNVMKF 9 83 579.7970207745442 1157.5794886158883 2 579.7963256835938 MULTI HCD FTMS 0 0 0 15223 194784.609375 0.49941806339863953 -4 0.0854644775390625 3 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 114.20165948288297 0.0022564706844261533 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 110.98 0 0 9.5876 9.5876 96.397 0 0 0 29.771212547196626 16.478174818886373 16.478174818886373 16.822581265925436 0 3.079689690656103 2 0.5752574989159953 1.1861818737241734 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVE[RH];[Y{I|L}]D{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGVE[RH];[RH]{M(Oxidation (M))|F}VN[NP]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[RH][NP]NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}VGG[NP]K{M(Oxidation (M))|F} 9.5876;8.1344;7.0158;6.4754;5.5625;5.351;4.8153;4.3845;4.0963;4.0198 +;-;-;-;-;-;-;-;-;- + 581 NaN NaN 185847.7 NaN 11848 3376 15223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15227 66.604 NaN 291620 35 0 43538 0.261 + 28586 TPVGSSYGDLL 11 65 554.7791273277198 1107.5437017222396 2 554.7796020507812 MULTI HCD FTMS 0 0 0 15223 169848.125 0.7695322900386646 -2 0.0394744873046875 4 Unmodified _TPVGSSYGDLL_ ENSG00000150347|ENST00000279873|ARID5B;nc|ENSG00000150347|Q14865-2|ARID5B 70.33199760932243 0.015004000202230274 2 [TP]V[SG]SY[DG]{I|L}{I|L} 11 0 + 48.504 0 0 4.3794 4.3794 86.943 0 0 0 5.862435673934279 43.89979898484764 5.862435673934279 9.771212547196619 0 2.1237125054200234 0 0.4247425010840047 0 + + [TP]V[SG]SY[DG]{I|L}{I|L};[TP]V[SG]SYT[PS]{I|L};[TP]VT[HM][Y{M(Oxidation (M))|F}]{I|L};[TP]VM[HT][Y{M(Oxidation (M))|F}]{I|L} 4.3794;3.4972;3.4868;3.1275 +;-;-;- + 143 NaN NaN 143752.9 NaN 11849 3376 15223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15228 66.608 NaN 311360 35 0 46874 0.261 -1 FPAGYMYPSM 10 70 590.2460169250976 1178.477480916995 2 590.2465209960938 MULTI HCD FTMS 0 0 0 15223 184938.703125 0.9289409529855023 7 -0.1678466796875 5 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 39.957323273324995 0.14577711486213385 2 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE] 8 -1 + 49.87 0 0 4.2317 4.2317 82.932 0 0 0 39.41245036856159 11.102065882283796 11.102065882283796 3.979400086720375 0 1.4247425010840047 0 0.9247425010840047 0 MQ[Y{I|L}]{M(Oxidation (M))|F}Y[WE];MY[Q{I|L}]{M(Oxidation (M))|F}Y[WE];M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE];M[AG][Y{I|L}]{M(Oxidation (M))|F}Y[WE];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}Y[PS]M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[CP]|[EA]}M;M{[YC]|[HE]}V{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}];{[WN]|[YH]}[NG][NP]Y[WE];[W{M(Oxidation (M))|F}]Y{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}];[WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][Q{I|L}] 4.2317;3.8941;3.6194;3.4458;3.0902;2.5841;2.3612;2.3245;2.3224;1.8163 -;-;-;-;-;-;-;-;-;- 349 + NaN NaN 131986.2 NaN 11850 3376 15223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15229 66.611 NaN 214380 35 0 59317 0.263 + -1 RCQRIYGRVF 10 49 452.2430108583163 1353.707203175149 3 452.5770568847656 MULTI HCD FTMS 0 0 0 15223 57499.82421875 0.6190794042419181 3 -0.0589447021484375 6 Carbamidomethyl (C) _RC(Carbamidomethyl (C))QRIYGRVF_ REV__nc|ENSG00000228741|Q96N96-5|SPATA13 3.5870582119611467 0.4563168352879256 2 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.2877 0 0 1089.5603048370615 0 1089.5603048370615 0 30.969100130080562 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.2877 + + 7 + NaN NaN 117161.7 NaN 11851 3376 15223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15231 66.616 NaN 1980800 35 0 147980 0.326 + 11252 IYLLIHNNF 9 114 573.8185211900951 1145.6224894469901 2 573.8004150390625 MULTI HCD FTMS 0 0 0 15230 173563.703125 0.3542706088194527 -1 0.0229339599609375 1 Unmodified _IYLLIHNNF_ ENSG00000143119|ENST00000271324|CD53;ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF 85.35673624503755 0.00464763827098139 2 {I|L}Y{I|L}{I|L}{I|L}HNGG{M(Oxidation (M))|F} 10 2 + 66.945 0 0 5.8436 5.8436 91.423 0 0 0 24.199784405891762 13.810187889572418 13.810187889572418 22.67220322351953 0 2.021652514092061 1.5228787452803376 0 0.75 {I|L}Y{I|L}{I|L}{I|L}HNGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HNN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}{I|L}HGGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}[HQ]VN{M(Oxidation (M))|F};[Y{I|L}]{I|L}[HN]{I|L}{I|L}N{M(Oxidation (M))|F};[Y{I|L}][HA][PA]S{I|L}K{M(Oxidation (M))|F};[YR]SV{M(Oxidation (M))|F}S{I|L}K{M(Oxidation (M))|F};RRGA[HK]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};RRQ[HK]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[DV]{I|L}{I|L}[HK]A{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 5.8436;3.8645;3.0608;2.4717;2.2368;2.0615;1.8634;0.72648;0.57748;0.39806 -;+;-;-;-;-;-;-;-;- + 6785 + NaN NaN 391880.5 NaN 11852 3377 15230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15232 66.62 NaN 351860 35 0 71388 0.264 + -1 SAPFTMMMFF 10 63 419.8377735859413 1256.491491358024 3 419.8380432128906 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 3 Oxidation (M) _SAPFTM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))FF_ REV__ENSG00000148842|ENST00000369878|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2 3.5870582119611467 0.4563168352879256 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.0425 0 0 1091.413104982827 0 1091.413104982827 0 2.6413688858352184 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0425 + + 15 + NaN NaN 142586.9 NaN 11853 3377 15230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15233 66.624 NaN 208410 35 0 17882 0.261 -1 TCPHMLQTL 9 72 558.7626517994513 1115.5107506657025 2 558.7634887695312 MULTI HCD FTMS 0 0 0 15230 53398.03125 0.01370378579115238 30 -0.836334228515625 3 Carbamidomethyl (C),Oxidation (M) _TC(Carbamidomethyl (C))PHM(Oxidation (M))LQTL_ ENST00000324941.4_1_7:73086172-73086286:+|nuORF 12.240655878213236 0.2545997876781172 2 VT{I|L} 3 -1 29.055 0 0 2.6046 0 0 784.301073142775 0 784.301073142775 0 11.197887582883936 0 0 0 0.5 0 0.3252574989159953 0 VT{I|L} 2.6046 - 53 NaN NaN 114798.2 NaN 11854 3377 15230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15235 66.629 NaN 10214000 35 0 1214500 0.327 + 12757 KYDEIFYNL 9 127 602.7977562185981 1203.5809595039962 2 602.7982788085938 MULTI HCD FTMS 0 0 0 15234 7996156 1 0 0 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 128.93241758739586 0.0006697181619526092 2 {NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L} 10 4 + 99.483 0 0 8.2656 8.2656 88.163 0 0 0 6.708391638745525 16.53212513775344 6.708391638745525 0.7918124604762511 0 2.6861818737241734 0.9208187539523752 1.7733623702246375 0.805462187404089 {NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{I|L}DY[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}EKYN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KEYN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YGG{I|L} 8.2656;8.1998;8.0535;7.7631;7.7082;7.5041;7.4797;7.4347;7.3759;7.2884 -;-;-;-;-;-;-;-;-;- 38354 NaN NaN 952749.2 NaN 11855 3378 15234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15236 66.633 NaN 1469300 35 0 150150 0.261 -1 YLDPEGEMI 9 98 541.7404959571124 NaN 0 541.75830078125 PEAK HCD FTMS 0 0 0 15234 16425.720703125 1 0 0 2 Oxidation (M) _YLDPEGEM(Oxidation (M))I_ ENST00000405592.5_1_2:42982327-42982585:+|nuORF 12.531546534597751 0.23452071659215576 2 VSPVE 5 -1 19.116 0 0 1.7676 0 0 131.97564632947564 435.2037518077943 567.1793981372699 0 0 0 0 0 0 0 0.9361818737241734 0 VSPVE 1.7676 - 414 + NaN NaN 320937.8 NaN 11856 3378 15234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15237 66.637 NaN 629520 35 0 61518 0.261 + 10047 IFDQSGTYL 9 70 522.2557537924507 1042.4969546517013 2 522.255859375 MULTI HCD FTMS 0 0 0 15234 562219.4375 1 0 0 3 Unmodified _IFDQSGTYL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 100.0907132914201 0.004261551473353346 2 {I|L}{M(Oxidation (M))|F}DQSGTY{I|L} 9 0 + 85.328 0 0 8.1849 8.1849 92.314 0 0 0 72.3822875860511 6.127042801912879 6.127042801912879 9.208187539523749 0 2.7302046884880937 0 1.6421590589602533 0 + + {I|L}{M(Oxidation (M))|F}DQSGTY{I|L};{I|L}{M(Oxidation (M))|F}D[AG]SGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQSGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}QSGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}Q{I|L}SGTY{I|L};{I|L}[QA]{[YD]|[{M(Oxidation (M))|F}M]}GTY{I|L};{[{M(Oxidation (M))|F}D]|MM}[AG]{I|L}SGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQS{[CA]|SS}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}QS{[CA]|SS}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}Q{I|L}S{[CA]|SS}{M(Oxidation (M))|F}{I|L} 8.1849;7.3016;6.9571;6.0676;5.2025;4.3326;4.3192;3.9581;3.0686;2.2035 +;-;+;-;-;-;-;-;-;- + 660 + NaN NaN 176875.3 NaN 11857 3378 15234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15238 66.64 NaN 520510 35 0 42194 0.261 + 32828 WVDEMQVQL 9 78 582.2734098437274 1162.5322667542548 2 582.2738037109375 MULTI HCD FTMS 0 0 0 15234 182224.640625 0.4524764193767558 9 -0.24240875244140625 4 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 51.629811660486645 0.02929079705179888 2 E{M(Oxidation (M))|F}QVQ{I|L} 6 3 58.994 0 0 5.0746 0 0 400.17589003730626 0 400.17589003730626 0 39.07288017096553 0 0 0 1.4247425010840047 0 0.2742275032520141 0.7134679910804405 + E{M(Oxidation (M))|F}QVQ{I|L} 5.0746 + + 157 NaN NaN 159830.6 NaN 11858 3378 15234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15239 66.644 NaN 354470 35 0 10263 0.261 -1 VYMDWYEKF 9 72 648.7839342644693 NaN 0 648.7832641601562 PEAK HCD FTMS 0 0 0 15234 55452.4453125 0.6256632989325954 9 -0.24240875244140625 5 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 29.43715596616401 0.12405400877255461 2 P{M(Oxidation (M))|F}DWYE 6 -1 34.837 0 0 2.6889 0 0 165.08141118007603 290.15058313541255 455.2319943154886 0 0 0 0 0 1.5451140161145327 0 0 0 P{M(Oxidation (M))|F}DWYE 2.6889 - 69 + NaN NaN 159167.6 NaN 11859 3378 15234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15240 66.647 NaN 219120 35 0 16979 0.261 -1 KYMDINFDF 9 56 604.7681072670384 1207.5216616008768 2 605.771240234375 MULTI HCD FTMS 0 0 0 15234 51318.90625 0.06170963656434016 57 -1.6056137084960938 6 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 24.990960013464015 0.14443998892849796 2 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4 -1 36.075 0 0 2.9875 0 0 666.3041299743956 0 666.3041299743956 0 13.856355030044924 0 0 0 1.274227503252014 0 0.7134679910804405 0 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.9875 + + 137 + NaN NaN 119076.6 NaN 11860 3378 15234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15242 66.652 NaN 962680 35 0 137700 0.327 + 19910 NYFIPSHYF 9 92 594.2799969440631 NaN 0 594.2799682617188 PEAK HCD FTMS 0 0 0 15241 270312.75 0.8594724155812566 1 -0.01983642578125 1 Unmodified _NYFIPSHYF_ ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH 60.07390631473393 0.025248448234918747 2 {I|L}DYEN{M(Oxidation (M))|F} 6 7 37.357 0 0 3.1483 0 0 128.08627062895067 274.083128999822 402.1693996287727 0 0 0 0 0 2.0682503180159344 0 1.055462187404089 0 {I|L}DYEN{M(Oxidation (M))|F} 3.1483 - 1291 + NaN NaN 239315.6 NaN 11861 3379 15241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15243 66.656 NaN 407020 35 0 67616 0.262 + 12316 KMKKGSFSL 9 55 513.2956689867755 NaN 0 513.3050537109375 PEAK HCD FTMS 0 0 0 15241 12805.904296875 0.8396915848191374 -1 0.02289581298828125 2 Unmodified _KMKKGSFSL_ REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF 9.38312468134398 0.24977752951804 2 CVVKV{M(Oxidation (M))|F} 6 -1 34.245 0 0 3.3424 0 0 131.08005027516248 215.10349451236564 346.18354478752815 0 0 0 0 0 0.8494850021680094 0 0 0 CVVKV{M(Oxidation (M))|F} 3.3424 - 100 + NaN NaN 153908.1 NaN 11862 3379 15241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15244 66.66 NaN 532270 35 0 26687 0.261 -1 KYMDIEFDF 9 79 612.2680462198797 1222.5215395065593 2 612.2685546875 MULTI HCD FTMS 0 0 0 15241 120904.5 0.05602455257614729 38 -1.0814971923828125 3 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 34.93206674587334 0.08860942999206235 2 SE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5 -1 50.745 0 0 4.1509 0 0 579.2574940412125 0 579.2574940412125 0 43.09385934535719 0 0 0 1.3494850021680094 0 0.2302046884880938 0 SE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1509 - 259 NaN NaN 173711 NaN 11863 3379 15241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15245 66.664 NaN 136520 35 0 10160 0.264 + 5345 FFSTWQHEF 9 59 410.18665752593927 1227.538143178018 3 410.1859130859375 MULTI HCD FTMS 0 0 0 15241 57048.9140625 0.6403545764379511 1 -0.01983642578125 4 Unmodified _FFSTWQHEF_ REV__ENSG00000088854|ENST00000252032|DNAAF9 5.230669730166228 0.3113646817964458 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.1388 0 0 1062.4600772373913 0 1062.4600772373913 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1388 + + 29 + NaN NaN 118701.1 NaN 11864 3379 15241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15246 66.667 NaN 243340 35 0 11806 0.261 + 6099 FPEGALIRL 9 71 508.3002760598727 NaN 0 508.30010986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FPEGALIRL_ ENSG00000197948|ENST00000435817|FCHSD1;ENST00000522126.5_1_5:141021104-141024617:-|nuORF;nc|ENSG00000197948|Q86WN1-2|FCHSD1 12.240655878213236 0.2359303321180293 2 QS 2 9 13.43 0 0 1.3237 0 0 147.15772877814544 649.3098848932249 796.4676136713704 0 0 0 0 0 0 0 0.7614393726401688 0.3252574989159953 QS 1.3237 - 132 + NaN NaN 119640.9 NaN 11865 3379 15241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15248 66.672 NaN 3097300 35 0 544680 0.327 + 35575 YYIDKLEYL 9 104 610.3158416599185 1218.617130386637 2 610.3161010742188 MULTI HCD FTMS 0 0 0 15247 2212241.5 0.8012739662109013 2 -0.04888916015625 1 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 128.93241758739586 0.0006697181619526092 2 YY{I|L}DK{I|L}EY{I|L} 9 0 + 109.59 0 0 8.9932 8.9932 96.162 0 0 0 8.863781092484686 8.863781092484686 8.863781092484686 19.348331157524967 0 3.079689690656103 2 1.8494850021680094 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK{I|L}E{I|L}Y;YY{I|L}DK{I|L}YE{I|L};YY{I|L}DK[YE]{I|L}{I|L};YY{I|L}EY{I|L}DK{I|L};{I|L}YYDK{I|L}EY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}EY{I|L};YY{I|L}EY{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YE{I|L}YY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}E{I|L}Y 8.9932;7.4054;7.2751;6.4541;5.6302;5.3214;5.1653;5.1253;4.4787;4.305 +;-;-;-;-;-;-;-;-;- + 3373 + NaN NaN 561097.2 NaN 11866 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15249 66.676 NaN 2398000 35 0 133600 0.261 + 27209 SYNNFFRMF 9 122 621.2737767427004 1240.5330005522007 2 621.2738647460938 MULTI HCD FTMS 0 0 0 15247 1177639.625 0.21327287877277323 16 -0.46484375 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 193.2943466776899 1.661812519250559E-13 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 8 2 113.05 0 0 9.1132 0 0 0 208.03621851138908 208.03621851138908 75.26714438989785 0 0 0 0 2.385151878060192 2 1.4773473230428982 1.079689690656103 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RT 9.1132 - 8211 + NaN NaN 455194.3 NaN 11867 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15250 66.68 NaN 956870 35 0 82768 0.261 + 2807 DYILNVMKF 9 84 579.7970207745442 1157.5794886158883 2 579.797119140625 MULTI HCD FTMS 0 0 0 15247 390023.15625 1 0 0 3 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 110.6747026088012 0.0028322563155251486 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 91.289 0 0 7.8862 7.8862 94.453 0 0 0 17.55272505103308 16.478174818886387 16.478174818886387 17.55272505103308 0 2.548455006504028 2 0.23965182871044374 1.055462187404089 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[HG]|PP}V{M(Oxidation (M))|F}VN{I|L}[EP]{M(Oxidation (M))|F};[Y{I|L}]D{I|L}T{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NVY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[RH][NP]NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}VN[NP]K{M(Oxidation (M))|F};{[HG]|PP}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L}[EP]{M(Oxidation (M))|F} 7.8862;6.3699;6.1966;5.577;4.9299;4.6803;4.0607;3.9895;3.6616;3.2403 +;-;-;-;-;-;-;-;-;- + 1337 NaN NaN 233399.8 NaN 11868 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15251 66.683 NaN 750120 35 0 41125 0.261 + 9922 IDFQNFTNIF 10 99 629.8085219936265 1257.602491054053 2 629.80859375 MULTI HCD FTMS 0 0 0 15247 141294.375 0.6964160623201362 2 -0.04888916015625 4 Unmodified _IDFQNFTNIF_ tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1 28.494509381512117 0.24525010509582015 2 {[QV]|[N{I|L}]|[RA]|[KV]}WPH{[MS]|[{M(Oxidation (M))|F}A]}N{I|L}{M(Oxidation (M))|F} 10 5 + 31.799 0 0 2.5285 2.5285 83.727 0 0 0 0.3099611277457406 8.201075205960898 0.3099611277457406 9.164539485499247 0 1.1549471895720984 1.3010299956639813 1.5 0 {[QV]|[N{I|L}]|[RA]|[KV]}WPH{[MS]|[{M(Oxidation (M))|F}A]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WPH{[MS]|[{M(Oxidation (M))|F}A]}GG{I|L}{M(Oxidation (M))|F};MM{I|L}Q{[WN]|[YH]}SV[H{I|L}];MM{I|L}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MT]{I|L}{M(Oxidation (M))|F};MM{I|L}[AG]{[WN]|[YH]}SV[H{I|L}];{[QV]|[N{I|L}]|[RA]|[KV]}WP[QA]KQ[C(Carbamidomethyl (C))N] 2.5285;1.7998;1.5676;1.0569;0.83884;0.57701 -;-;-;-;-;- 633 NaN NaN 211027.4 NaN 11869 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15252 66.687 NaN 343910 35 0 17464 0.261 + -1 RMHQTFSSNL 10 75 618.7929702121437 1235.5713874910873 2 618.7919311523438 MULTI HCD FTMS 0 0 0 15247 100803.28125 0.7536753796642309 2 -0.04888916015625 5 Oxidation (M) _RM(Oxidation (M))HQTFSSNL_ REV__ENSG00000153896|ENST00000329285|ZNF599 15.248480904072842 0.3684828712757339 2 {M(Oxidation (M))|F}Y{I|L}N 4 -1 34.399 0 0 2.7841 0 0 680.2978382794937 0 680.2978382794937 0 18.99288766643714 0 0 0 1.1747425010840047 0 0 0 {M(Oxidation (M))|F}Y{I|L}N 2.7841 - 261 NaN NaN 139050.5 NaN 11870 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15253 66.69 NaN 283190 35 0 23943 0.261 + 24822 RYPQSIFSTF 10 81 623.3163769019827 1244.6182008707653 2 624.322265625 MULTI HCD FTMS 0 0 0 15247 73111.0546875 0.6325503984002615 7 -0.199676513671875 6 Unmodified _RYPQSIFSTF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 29.84058131909904 0.23356904650364865 2 TSP{I|L}Y[{I|L}T]TW 9 7 32.089 0 0 2.5782 0 0 164.07331799348873 0 164.07331799348873 0 -2.0885255485292404 -2.0885255485292404 0 0 0 0 0.5 0 TSP{I|L}Y[{I|L}T]TW 2.5782 - 1148 + NaN NaN 129272.6 NaN 11871 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15254 66.693 NaN 332410 35 0 27808 0.263 + 10774 ISLSTAPWN 9 78 494.7585905808616 NaN 0 495.2322692871094 PEAK HCD FTMS 0 0 0 15247 11400.6337890625 0.27838660068070437 1 -0.02651214599609375 7 Unmodified _ISLSTAPWN_ REV__nc|ENSG00000255374|P59539|TAS2R45 4.3292370932331545 0.2742679634796037 2 {I|L}S 2 -1 11.95 0 0 1.2102 0 0 88.01756500897586 696.3493746393186 784.3669396482945 0 0 0 0 0 0 0 0.9247425010840047 0 {I|L}S 1.2102 + + 31 + NaN NaN 135485 NaN 11872 3380 15247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15256 66.698 NaN 703680 35 0 90599 0.466 + 20004 NYIFGFHPHG 10 76 594.7844176462197 1187.5542823592393 2 595.3021850585938 MULTI HCD FTMS 0 0 0 15255 42486.84765625 0.16217815488979237 -7 0.14476776123046875 1 Unmodified _NYIFGFHPHG_ ENSG00000124003|ENST00000446656|MOGAT1 15.847184025352803 0.36288280428275715 2 [YV]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}YDQ 9 9 + 62.197 0 0 5.2374 5.2374 84.102 0 0 0 13.29058719264225 35.737862141609185 13.29058719264225 3.3226467981605623 0 0.9247425010840047 1.6989700043360187 0.4247425010840047 0.3807196863200844 [YV]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}YDQ;[YV]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{M(Oxidation (M))|F}MQ;[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]YDQ;[YV]P{I|L}[YQ]YDQ;[YV]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{M(Oxidation (M))|F}MQ;K[C(Carbamidomethyl (C))H][QP]{I|L}{M(Oxidation (M))|F}MQ;[YV]E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WW{M(Oxidation (M))|F};[YV]P{I|L}[YQ]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};K[C(Carbamidomethyl (C))H]{I|L}[QP]{M(Oxidation (M))|F}MQ 5.2374;4.9576;4.6047;4.2245;3.2337;3.0859;2.3636;2.2671;2.2208;2.0693 -;-;-;-;-;-;-;-;-;- 495 NaN NaN 191275.1 NaN 11873 3381 15255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15257 66.706 NaN 1424000 35 0 290640 0.261 -1 YNALNPMHKE 10 83 616.790361248611 1231.566169564022 2 616.7902221679688 MULTI HCD FTMS 0 0 0 15255 88774.1484375 0.10131732871775356 12 -0.34889984130859375 2 Oxidation (M) _YNALNPM(Oxidation (M))HKE_ ENSG00000213160|ENST00000392647|KLHL23 29.081581746732265 0.240155558137004 2 [YN]A 3 -1 41.809 0 0 3.3948 0 0 0 880.4002979116561 880.4002979116561 16.019082351383823 0 0 0 0 1 1.6989700043360187 0 0.6747425010840047 [YN]A 3.3948 + + 264 NaN NaN 309683.4 NaN 11874 3381 15255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15258 66.709 NaN 244500 35 0 31924 0.262 + -1 ISWYLLML 8 64 527.7839432478149 NaN 0 527.80078125 PEAK HCD FTMS 0 0 0 15255 8448.806640625 0.17855542195579321 5 -0.1495513916015625 3 Oxidation (M) _ISWYLLM(Oxidation (M))L_ REV__ENSG00000137266|ENST00000406686|SLC22A23;REV__nc|ENSG00000137266|A1A5C7-2|SLC22A23;REV__SLC22A23|p.V419Rfs*50|1|0.64|ENSG00000137266|chr6:3289823-3289824|-/A|frameshift_variant 9.347437153973935 0.38822285293237185 2 {M(Oxidation (M))|F}{I|L} 2 -1 10.573 0 0 1.0036 0 0 131.05871408481704 659.3154390924436 790.3741531772607 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 1.0036 + + 17 + NaN NaN 133623.2 NaN 11875 3381 15255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15259 66.712 NaN 192310 35 0 45801 0.261 + 23190 RFLFERVCLW 10 50 456.9131617672367 NaN 0 456.91265869140625 PEAK HCD FTMS 0 0 0 15255 12543.2685546875 0.193655182241997 5 -0.1495513916015625 4 Unmodified _RFLFERVCLW_ REV__ENST00000546828.6_1_12:98909466-98909845:+|nuORF;REV__ENST00000556029.5_2_12:98909466-98909595:+|nuORF 1.7422754331352037 0.33869314273211465 2 G 1 -1 5.4846 0 0 0.6015 0 0 124.4615641577172 727.3037203424436 851.7652845001609 0 0 0 0 0 0 0 0 0 G 0.6015 - 3 + NaN NaN 110243.1 NaN 11876 3381 15255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15260 66.716 NaN 151090 35 0 11630 0.261 + -1 KNRCVNQL 8 60 516.2740415244949 1030.5335301157897 2 516.2737426757812 MULTI HCD FTMS 0 0 0 15255 31671.396484375 0.13818973450876149 12 -0.34889984130859375 5 Carbamidomethyl (C) _KNRC(Carbamidomethyl (C))VNQL_ REV__ENST00000083182.7_1_17:58524734-58524857:-|nuORF 16.942295170755138 0.46913822049235215 2 {M(Oxidation (M))|F}Q{I|L} 3 -1 25.467 0 0 2.4713 0 0 624.2983265607437 0 624.2983265607437 0 7.306634937682151 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}Q{I|L} 2.4713 - 50 NaN NaN 105631.8 NaN 11877 3381 15255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15262 66.721 NaN 5602200 35 0 1273300 0.326 + 5948 FPDPNVKYVF 10 114 613.3165566237965 1224.6185603143929 2 613.3321533203125 MULTI HCD FTMS 0 0 0 15261 685474.5625 0.5090037793355175 13 -0.38285064697265625 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 35.995811192298525 0.18015466441198996 2 {I|L}D[RP]AS{I|L}A{M(Oxidation (M))|F} 9 7 50.2 0 0 4.0992 0 0 236.11604506660314 0 236.11604506660314 0 5.466651902615318 0 0 0 0 0 2.0356668758921828 0 {I|L}D[RP]AS{I|L}A{M(Oxidation (M))|F} 4.0992 - 4786 NaN NaN 776098.3 NaN 11878 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15263 66.725 NaN 825180 35 0 61323 0.261 + 20209 NYLHLDYNF 9 75 599.7803175023859 1197.5460820715716 2 599.7806396484375 MULTI HCD FTMS 0 0 0 15261 544997 0.4060613748382498 4 -0.12717437744140625 2 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 107.5634045930896 0.0033401844687379516 2 [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F} 9 0 + 108.94 0 0 9.0967 9.0967 93.475 0 0 0 13.81559999683283 9.330984399557423 9.330984399557423 9.208187539523749 0 2.4604093769761874 1.5228787452803376 0 1.4489700043360187 + + [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DYGG{M(Oxidation (M))|F};NY{I|L}H{I|L}DYN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYGG{M(Oxidation (M))|F};NY{I|L}HY{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[VS]H{I|L}DYN{M(Oxidation (M))|F};NY{I|L}HHQQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}[VS]H{I|L}DYGG{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[KT]YHPQ{M(Oxidation (M))|F} 9.0967;8.3278;7.943;6.9511;6.1821;6.0343;5.1404;4.2307;4.0205;3.6276 +;-;+;-;-;-;-;-;-;- + 1398 NaN NaN 212510.9 NaN 11879 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15264 66.729 NaN 1400000 35 0 298830 0.263 + 20124 NYIPYLTKLKF 11 77 467.2707544193761 1398.7904338583282 3 467.27099609375 MULTI HCD FTMS 0 0 0 15261 368338.78125 0.3568089677683364 4 -0.12717437744140625 3 Unmodified _NYIPYLTKLKF_ ENSG00000205413|ENST00000379958|SAMD9 22.10888232116614 0.26444699522859644 2 NY{I|L} 3 8 52.435 0 0 3.7486 0 0 0 1005.5771636858925 1005.5771636858925 37.48651242028323 0 0 0 0 0.9247425010840047 2 0 0 + NY{I|L} 3.7486 + + 92 + NaN NaN 292684.8 NaN 11880 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15265 66.733 NaN 507320 35 0 63789 0.261 + 5205 FFDAELSQM 9 81 552.2391290246032 1102.4637051160064 2 552.2390747070312 MULTI HCD FTMS 0 0 0 15261 179777.984375 0.04993548544457885 66 -1.8447494506835938 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 114.6490535036381 0.0021834323520089267 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 81.877 0 0 7.4267 7.4267 91.049 0 0 0 4.137342758552691 67.2729783057342 4.137342758552691 9.208187539523749 0 2.3494850021680094 0 1.4559771852360797 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[SG]M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SM[SG];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP] 7.4267;6.5915;5.6382;5.0456;1.3965 +;-;-;-;- + 844 NaN NaN 161280.8 NaN 11881 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15266 66.736 NaN 654170 35 0 67608 0.261 + 22427 QPYSQEWEL 9 83 590.2691787354943 1178.5238045377885 2 590.2694702148438 MULTI HCD FTMS 0 0 0 15261 128065.4140625 0.48560474782187885 -1 0.02237701416015625 5 Unmodified _QPYSQEWEL_ ENSG00000103061|ENST00000263997|SLC7A6OS 47.748688679222035 0.03472022231463587 2 YWVHE{I|L} 6 6 41.86 0 0 3.5519 0 0 333.13566279658795 0 333.13566279658795 0 25.548669276076904 0 0 0 0.4247425010840047 0 0.4247425010840047 0 YWVHE{I|L} 3.5519 - 727 NaN NaN 184140.3 NaN 11882 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15267 66.739 NaN 306760 35 0 32078 0.261 + 18730 MYTKLFVGF 9 65 561.2885143348607 1120.5624757365213 2 561.2887573242188 MULTI HCD FTMS 0 0 0 15261 64678.1328125 0.15905957812981403 -12 0.2655029296875 6 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 69.10491478415734 0.009377850133389008 2 [Y{M(Oxidation (M))|F}]T[K{I|L}]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 58.439 0 0 5.2151 5.2151 92.062 0 0 0 7.147642715192504 47.63682493045401 7.147642715192504 58.43880628309982 0 2.610924374808178 0 0.4247425010840047 0 + + [Y{M(Oxidation (M))|F}]T[K{I|L}]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5.2151 + + 387 NaN NaN 135003 NaN 11883 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15268 66.743 NaN 200940 35 0 16290 0.261 + 6317 FPFREELL 8 61 525.7839531628871 1049.553353392574 2 525.784912109375 MULTI HCD FTMS 0 0 0 15261 51169.8828125 0.32948670713356937 4 -0.12717437744140625 7 Unmodified _FPFREELL_ ENSG00000204560|ENST00000376442|DHX16 19.256988751693697 0.45210759540527456 2 PE 2 6 18.94 0 0 1.8046 0 0 805.4351063459 0 805.4351063459 0 0.3566687589218276 0 0 0 0.4247425010840047 0 0 0 PE 1.8046 - 26 NaN NaN 111704.3 NaN 11884 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15269 66.746 NaN 169660 35 0 13406 0.261 + 25567 SFSEYFGAI 9 53 510.73767500934207 1019.4607970854842 2 510.73760986328125 MULTI HCD FTMS 0 0 0 15261 71358.8671875 0.42922864891825996 -1 0.02237701416015625 8 Unmodified _SFSEYFGAI_ ENSG00000085274|ENST00000349841|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-4|MYNN 11.640296217721598 0.25978676193971967 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YYA{I|L} 8 3 + 38.81 0 0 3.8069 3.8069 89.431 0 0 0 6.030768805449192 2.8756930805869345 2.8756930805869345 36.1437538892681 0 0.9247425010840047 1.0969100130080565 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YYA{I|L};[KC]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PS]{I|L}C{I|L} 3.8069;0.26155 -;- 118 NaN NaN 111765.3 NaN 11885 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15270 66.749 NaN 1154400 35 0 101470 0.261 -1 0 89 531.2646031965422 530.2573267299422 1 531.2642211914062 MULTI HCD FTMS 0 0 0 15261 101285.4375 0.9289008263106802 4 -0.12717437744140625 9 NaN NaN 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TS 4 -1 27.202 0 0 5.13 0 0 0 79.0382159723828 79.0382159723828 4.010079543228162 0 0 0 0 0 1.3979400086720375 0.5242275032520141 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TS 5.13 - 46 NaN NaN 263105.2 NaN 11886 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15271 66.753 NaN 129110 35 0 9397.9 0.261 + 10963 IYDPVPSQL 9 57 516.2740415244949 1030.5335301157897 2 516.273681640625 MULTI HCD FTMS 0 0 0 15261 32992.5390625 0.1439541895813183 13 -0.38285064697265625 10 Unmodified _IYDPVPSQL_ REV__ENSG00000101452|ENST00000252011|DHX35;REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35 15.847184025352803 0.2234401846867398 2 Q{I|L} 2 -1 24.776 0 0 2.4042 0 0 771.3793202130875 0 771.3793202130875 0 9.291746928241125 0 0 0 0.3807196863200844 0 0 0 Q{I|L} 2.4042 + + 19 NaN NaN 109534.3 NaN 11887 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15272 66.756 NaN 167490 35 0 5805 0.261 + -1 EMDCYYNACI 10 39 641.2314453125 NaN 0 641.2314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Carbamidomethyl (C) _EMDC(Carbamidomethyl (C))YYNACI_ REV__ENST00000453623.5_1_7:16666718-16666781:-|nuORF 0.45834013312273997 0.33979201340002624 2 {I|L} 1 -1 1.1092 0 0 0.086697 0 0 593.5097827130875 569.8319796197874 1163.3417623328749 0 0 0 0 0 0 0 0 0 {I|L} 0.086697 + + 1 + NaN NaN 119584.9 NaN 11888 3382 15261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15274 66.761 NaN 1679900 35 0 517690 0.327 -1 TAMDVVYAL 9 59 499.74673630115075 997.4789196691015 2 499.7469177246094 MULTI HCD FTMS 0 0 0 15273 816138.625 1 0 0 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 2 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2150849309072 0 533.2150849309072 0 18.738350322034236 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 96 NaN NaN 341048.7 NaN 11889 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15275 66.765 NaN 272440 35 0 66546 0.261 + 32995 YATELMRRQ 9 64 584.3002245455127 1166.5858961578253 2 585.2883911132812 MULTI HCD FTMS 0 0 0 15273 12921.4072265625 0.07566649198084571 14 -0.39556884765625 2 Unmodified _YATELMRRQ_ REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;REV__ENSG00000105877|ENST00000409508|DNAH11 13.90604991867851 0.24021115267848145 2 YA 2 -1 34.949 0 0 2.9958 0 0 0 929.4513643854124 929.4513643854124 22.228568193493103 0 0 0 0 0 2 0 0 YA 2.9958 + + 79 + NaN NaN 138122.9 NaN 11890 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15276 66.769 NaN 1885700 35 0 378560 0.261 + 13997 KYSPFVVSF 9 85 537.2869228892054 1072.5592928452106 2 537.2869262695312 MULTI HCD FTMS 0 0 0 15273 892966.75 0.24002545224676422 -5 0.13179779052734375 3 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 118.0683919894846 0.0016252157255221692 2 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 82.884 0 0 7.7277 7.7277 95.116 0 0 0 8.864481584990017 51.61445925863681 8.864481584990017 27.23242737174388 0 2.805462187404089 0 1.360924374808178 0.535666875892183 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}VVVVS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]NVVVVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]N[YV]VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]GGVVVVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]GG[YV]VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV[YV]{[NV]|[RG]}{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}V[YV]{[NV]|[RG]}{M(Oxidation (M))|F} 7.7277;5.1887;5.0869;4.854;4.3663;4.276;3.9727;3.7398;3.1656;3.0752 +;-;-;-;-;-;-;-;-;- + 811 NaN NaN 370466 NaN 11891 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15277 66.773 NaN 235650 35 0 32241 0.261 + 28587 TPVGSSYGDLL 11 56 554.7791273277198 1107.5437017222396 2 554.779296875 MULTI HCD FTMS 0 0 0 15273 181088.546875 0.8204593614235824 5 -0.14438629150390625 4 Unmodified _TPVGSSYGDLL_ ENSG00000150347|ENST00000279873|ARID5B;nc|ENSG00000150347|Q14865-2|ARID5B 41.95555342248728 0.1243556816384599 2 SYGD{I|L}{I|L} 6 5 39.831 0 0 3.5963 0 0 441.22163588691564 0 441.22163588691564 0 29.346237737811762 0 0 0 1 0 0.4247425010840047 0 + SYGD{I|L}{I|L} 3.5963 + + 73 NaN NaN 121037.9 NaN 11892 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15278 66.776 NaN 415050 35 0 27116 0.262 + 8447 GYYNGKWEFL 10 66 638.8031454963647 1275.5917380595292 2 638.8047485351562 MULTI HCD FTMS 0 0 0 15273 152281.46875 1 0 0 5 Unmodified _GYYNGKWEFL_ ENSG00000144843|ENST00000357003|ADPRH 53.40400417844725 0.06540992187319636 2 [YN][KG]GYWE{M(Oxidation (M))|F}{I|L} 10 4 + 54.447 0 0 4.2684 4.2684 83.544 0 0 0 5.560931587959672 5.560931587959672 5.560931587959672 5.560931587959672 0 0.7742275032520141 1.3979400086720375 0.3807196863200844 1.305462187404089 [YN][KG]GYWE{M(Oxidation (M))|F}{I|L};[YG]YN[KG]WE{M(Oxidation (M))|F}{I|L};[YN][YG]{[QG]|[NA]}{I|L}WY{I|L};[YN]{[QG]|[NA]}[YG]{I|L}WY{I|L};[YN][KG]G{M(Oxidation (M))|F}[WE]Y{I|L} 4.2684;3.8324;2.932;2.5401;1.9776 -;+;-;-;- + 425 NaN NaN 153535 NaN 11893 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15279 66.779 NaN 315330 35 0 34103 0.263 -1 PFQCPQCD 8 76 526.2026185303662 NaN 0 526.2022094726562 PEAK HCD FTMS 0 0 0 15273 67516.046875 1 0 0 6 2 Carbamidomethyl (C) _PFQC(Carbamidomethyl (C))PQC(Carbamidomethyl (C))D_ ENSG00000204947|ENST00000378061|ZNF425 2.8892196856762586 0.38822285293237185 2 V 1 -1 10.841 0 0 1.0321 0 0 586.1287650374917 362.17048059635005 948.2992456338418 0 0 0 0 0 0.7742275032520141 0 0 0 V 1.0321 - 78 + NaN NaN 134672.2 NaN 11894 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15280 66.783 NaN 215860 35 0 9271.5 0.261 -1 FPFYYEIKM 9 70 627.298453891388 1252.582354849576 2 627.2967529296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 33.4449034751529 0.0954363425218424 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}Q{M(Oxidation (M))|F} 9 -1 + 51.691 0 0 4.1268 4.1268 89.956 0 0 0 37.733871898888154 6.751736484954378 6.751736484954378 39.267222304475595 0 1.7104093769761874 0 0.3494850021680094 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}Q{M(Oxidation (M))|F};[RH]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[{I|L}A]WY{M(Oxidation (M))|F};[RH][YG]{M(Oxidation (M))|F}W{I|L}Q{M(Oxidation (M))|F};[RH][YG][KP]WY{M(Oxidation (M))|F} 4.1268;0.99188;0.82118;0.59163 -;-;-;- 235 + NaN NaN 126334 NaN 11895 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15281 66.786 NaN 58030 35 0 4469.6 0.264 -1 VYYMVGSI 8 46 474.23299178973934 NaN 0 473.9079284667969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _VYYM(Oxidation (M))VGSI_ ENSG00000162687|ENST00000294725|KCNT2 2.577480529830294 0.38822285293237185 2 N{I|L} 2 -1 8.5835 0 0 0.90691 0 0 132.09975935897245 584.2030123346311 716.3027716936035 0 0 0 0 0 0 0 0 0 N{I|L} 0.90691 - 6 + NaN NaN 93004.6 NaN 11896 3383 15273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15283 66.791 NaN 3760100 35 0 255090 0.326 + 24941 RYSVFFQSL 9 114 573.798279888378 1145.582006843556 2 573.7978515625 MULTI HCD FTMS 0 0 0 15282 1813462 0.5011385354454824 1 -0.03338623046875 1 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 62.86856922530385 0.01356854487378719 2 [Y{I|L}]KTAEA{M(Oxidation (M))|F}GT 10 9 79.73 0 0 6.9598 0 0 0 60.992441052069275 60.992441052069275 9.371491236127738 0 0 0 0 1.7614393726401687 1.0969100130080565 1.8586856641449465 0.3252574989159953 [Y{I|L}]KTAEA{M(Oxidation (M))|F}GT 6.9598 - 9373 NaN NaN 514670.3 NaN 11897 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15284 66.795 NaN 2416200 35 0 293910 0.261 + 12758 KYDEIFYNL 9 103 602.7977562185981 1203.5809595039962 2 602.7982177734375 MULTI HCD FTMS 0 0 0 15282 1742012.375 0.21785622679197356 6 -0.1715240478515625 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 107.09958533191995 0.0034159042678574016 2 {NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L} 10 4 + 90.792 0 0 7.5435 7.5435 86.935 0 0 0 8.239087409443187 16.532125137753454 8.239087409443187 0.6778710299381174 0 2.6237125054200234 0 1.9188265215345564 0.7742275032520141 {NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}KE{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L};{I|L}DY[SG]{I|L}{M(Oxidation (M))|F}YN{I|L} 7.5435;7.4872;7.4173;6.9977;6.859;6.8039;6.8026;6.7859;6.7821;6.7652 -;-;-;-;-;-;-;+;-;- + 13664 NaN NaN 459998.4 NaN 11898 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15285 66.8 NaN 773560 35 0 65375 0.261 -1 PYGKGWDLM 9 81 541.7523669874173 1081.4901810416345 2 541.7578735351562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _PYGKGWDLM(Oxidation (M))_ ENSG00000142627|ENST00000358432|EPHA2;EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant;EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant;EPHA2|p.I94Afs*5|1|0.53|ENSG00000142627|chr1:16148922-16148923|-/CGCT|frameshift_variant;EPHA2|p.P460Rfs*33|2|0.28|ENSG00000142627|chr1:16135704-16135704|G/-|frameshift_variant;EPHA2|p.S382Mfs*11|1|0.41|ENSG00000142627|chr1:16138020-16138020|C/-|frameshift_variant;EPHA2|p.T395Hfs*59|1|0.47|ENSG00000142627|chr1:16137982-16137983|-/G|frameshift_variant;EPHA2|p.Y179Lfs*35|1|0.24|ENSG00000142627|chr1:16148665-16148666|-/A|frameshift_variant;nc|ENSG00000142627|P29317-2|EPHA2 28.486842064014134 0.11819662193267319 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 38.94 0 0 3.6006 0 0 690.276618410779 0 690.276618410779 0 16.448565749036064 0 0 0 1.4247425010840047 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 3.6006 - 656 + NaN NaN 204958 NaN 11899 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15286 66.803 NaN 424590 35 0 24760 0.261 + 2808 DYILNVMKF 9 70 579.7970207745442 1157.5794886158883 2 579.7969360351562 MULTI HCD FTMS 0 0 0 15282 136980.453125 0.35121107793199136 4 -0.11417388916015625 4 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 83.42873516780209 0.004742894019233849 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 95.659 0 0 8.2637 8.2637 94.76 0 0 0 15.969100130080562 14.973024840566467 14.973024840566467 15.955612550363796 0 3.110924374808178 2 0 0.6747425010840047 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVE[RH];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]D{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGVE[RH];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGVY{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]D{I|L}NVE[RH];[RH]{M(Oxidation (M))|F}VN[NP]K{M(Oxidation (M))|F} 8.2637;6.8853;6.8841;5.9981;5.8412;5.5058;4.9217;4.7647;4.6186;4.5673 +;-;-;-;-;-;-;-;-;- + 752 NaN NaN 163121.1 NaN 11900 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15287 66.806 NaN 396380 35 0 25604 0.261 + 10048 IFDQSGTYL 9 75 522.2557537924507 1042.4969546517013 2 522.2560424804688 MULTI HCD FTMS 0 0 0 15282 95592.5390625 0.17002709740447208 6 -0.1715240478515625 5 Unmodified _IFDQSGTYL_ ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF 82.5293158979368 0.005033931517079822 2 {[{M(Oxidation (M))|F}D]|MM}{I|L}QSGTY{I|L} 9 2 + 59.307 0 0 5.6889 5.6889 83.86 0 0 0 0.9691001300805624 12.090606190045108 0.9691001300805624 0.9691001300805624 0 2.0924778212679485 0 1.1549471895720984 0 {[{M(Oxidation (M))|F}D]|MM}{I|L}QSGTY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQSGTY{I|L};{[{M(Oxidation (M))|F}D]|MM}N[{I|L}T]GTY{I|L};{[{M(Oxidation (M))|F}D]|MM}GG[{I|L}T]GTY{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}QSSS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DQSSS{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}MM{I|L};{[{M(Oxidation (M))|F}D]|MM}N[{I|L}T]SS{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[DP]{[HG]|PP}D{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}{[QS]|[NT]}D{M(Oxidation (M))|F}{I|L} 5.6889;5.596;4.8111;3.9278;3.0974;3.0044;2.7482;2.2195;0.594;0.10759 -;+;-;-;-;-;-;-;-;- + 612 NaN NaN 149442.9 NaN 11901 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15288 66.81 NaN 421910 35 0 29899 0.261 + 32829 WVDEMQVQL 9 82 582.2734098437274 1162.5322667542548 2 582.2732543945312 MULTI HCD FTMS 0 0 0 15282 62433.984375 0.15502791280329528 15 -0.419830322265625 6 Oxidation (M) _WVDEM(Oxidation (M))QVQL_ DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST 69.10491478415734 0.009377850133389008 2 {[RE]|[WV]}DE{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 58.738 0 0 5.0526 5.0526 87.022 0 0 0 1.1000676424793454 45.55007791865968 1.1000676424793454 9.208187539523749 0 1.3807196863200843 0 0.2742275032520141 0.5866968715561641 + + {[RE]|[WV]}DE{M(Oxidation (M))|F}QVQ{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}[AG]VQ{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}QV[AG]{I|L};{[RE]|[WV]}DE{M(Oxidation (M))|F}[AG]V[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[C(Carbamidomethyl (C))E]|[WC]}VQ{I|L};{[RE]|[WV]}{[ET]|[MV]}{[C(Carbamidomethyl (C))E]|[WC]}VQ{I|L};{[TV]|[{I|L}S]}[WE]{[C(Carbamidomethyl (C))E]|[WC]}VQ{I|L} 5.0526;4.2605;4.2605;3.4722;2.6097;2.1992;2.0184 +;-;-;-;-;-;- + 211 NaN NaN 148151.6 NaN 11902 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15289 66.813 NaN 550780 35 0 149040 0.264 + 7661 FYIWRPLRI 9 63 421.91659722801535 1262.7279622842461 3 421.9168701171875 MULTI HCD FTMS 0 0 0 15282 94519.2109375 0.38325980988145564 -3 0.09276580810546875 7 Unmodified _FYIWRPLRI_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 15.248480904072842 0.22861284681709862 2 YE 2 8 25.217 0 0 1.997 0 0 952.5960301798742 0 952.5960301798742 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 YE 1.997 - 13 NaN NaN 168444.1 NaN 11903 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15290 66.816 NaN 129410 35 0 15261 0.262 + 27613 TAHWRVPL 8 41 490.2762759979269 978.5379990626539 2 490.2767028808594 MULTI HCD FTMS 0 0 0 15282 49808.52734375 0.5912698114602163 6 -0.1715240478515625 8 Unmodified _TAHWRVPL_ ENSG00000169418|ENST00000368680|NPR1 12.531546534597751 0.5015908124873912 2 R 1 7 2.2185 0 0 0.22671 0 0 350.1884029706601 469.22715173892817 819.4155547095883 0 0 0 0 0 0 0 0 0 + R 0.22671 + + 2 + NaN NaN 104181.9 NaN 11904 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15291 66.82 NaN 106880 35 0 8171.4 0.261 + 21804 QALLDLHAL 9 49 497.2898317875853 992.5651106419706 2 497.1884765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _QALLDLHAL_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 {I|L}V 2 8 10.969 0 0 1.1051 0 0 312.1777337882581 465.21454797916255 777.3922817674206 0 0 0 0 0 0 0 0 0 {I|L}V 1.1051 - 15 + NaN NaN 105420.6 NaN 11905 3384 15282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15293 66.824 NaN 1838600 35 0 104640 0.327 + 27210 SYNNFFRMF 9 112 621.2737767427004 1240.5330005522007 2 621.2740478515625 MULTI HCD FTMS 0 0 0 15292 984082.625 0.17821932102872087 21 -0.6012039184570312 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 165.7202790778711 6.154960448002056E-09 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 106.51 0 0 8.5856 8.5856 92.876 0 0 0 77.99951110923283 2.8506072416448234 2.8506072416448234 9.208187539523749 0 2.7302046884880937 2 0 0.9361818737241736 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YG]GSN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.5856;7.8433;7.8433;7.4268;7.3913;7.1045;6.6845;6.649;6.4383;6.0594 +;-;-;+;-;-;-;-;-;- + 4165 + NaN NaN 376950.6 NaN 11906 3385 15292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15294 66.829 NaN 1053400 35 0 175760 0.261 + 35576 YYIDKLEYL 9 83 610.3158416599185 1218.617130386637 2 610.3162231445312 MULTI HCD FTMS 0 0 0 15292 652017.5625 0.23616078911074548 7 -0.20301055908203125 2 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 87.25819977447905 0.004597812622239197 2 YY{I|L}DK{I|L}EY{I|L} 9 0 + 94.848 0 0 7.7833 7.7833 94.712 0 0 0 0.9678748622465605 0.9678748622465605 0.9678748622465605 21.440162615404077 0 3.1237125054200234 2 1.1549471895720984 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK[YE]{I|L}{I|L};YY{I|L}EY{I|L}DK{I|L};YY{I|L}EY{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY{I|L}EY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YE{I|L}YY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YY[YE]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}YEYY{I|L}{I|L} 7.7833;6.0239;5.1358;4.7333;3.8028;2.6105;2.1228;1.3618 +;-;-;-;-;-;-;- + 683 + NaN NaN 261467.5 NaN 11907 3385 15292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15295 66.833 NaN 257750 35 0 20087 0.261 + 8448 GYYNGKWEFL 10 64 638.8031454963647 1275.5917380595292 2 638.8027954101562 MULTI HCD FTMS 0 0 0 15292 95888.4453125 0.6296790154415949 2 -0.0470123291015625 3 Unmodified _GYYNGKWEFL_ ENSG00000144843|ENST00000357003|ADPRH 33.4449034751529 0.20229115034201947 2 N{[QG]|[NA]}{I|L}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L} 8 7 38.097 0 0 2.9866 0 0 383.1465016095719 0 383.1465016095719 0 27.639275466122015 0 0 0 1.774227503252014 0 0 0.8494850021680094 N{[QG]|[NA]}{I|L}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L} 2.9866 - 69 NaN NaN 128972.9 NaN 11908 3385 15292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15296 66.836 NaN 198580 35 0 42802 0.261 + 27959 TFADFLHYII 10 58 620.323266647183 1238.631980361166 2 620.3241577148438 MULTI HCD FTMS 0 0 0 15292 93740.015625 0.6970577891084971 4 -0.10784149169921875 4 Unmodified _TFADFLHYII_ REV__ENSG00000158417|ENST00000289371|EIF5B 6.2057823575117 0.44245551207394906 2 N{I|L}{I|L} 3 -1 26.198 0 0 2.1151 0 0 880.405565330275 0 880.405565330275 0 13.010299956639813 0 0 0 0 0 0 0 N{I|L}{I|L} 2.1151 - 47 NaN NaN 117090.3 NaN 11909 3385 15292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15297 66.84 NaN 287850 35 0 20238 0.262 + -1 DTQRMQLPIQ 10 78 623.3163769019827 1244.6182008707653 2 624.320068359375 MULTI HCD FTMS 0 0 0 15292 14134.791015625 0.12229296549549973 12 -0.33197021484375 5 Oxidation (M) _DTQRM(Oxidation (M))QLPIQ_ REV__ENST00000563645.1_1_16:19514794-19516450:-|nuORF 5.296884461304476 0.4472664531305844 2 [Y{I|L}]KDY{I|L}PST 9 -1 34.152 0 0 2.744 0 0 0 161.0565222293557 161.0565222293557 23.694568895336737 0 0 0 0 0.4247425010840047 0 0.5 0 [Y{I|L}]KDY{I|L}PST 2.744 - 190 NaN NaN 132404.6 NaN 11910 3385 15292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15298 66.843 NaN 298220 35 0 39119 0.261 -1 VYQHDFCGPY 10 61 643.2681578695167 1284.5217628058333 2 643.2688598632812 MULTI HCD FTMS 0 0 0 15292 70499 0.6925400240320323 -3 0.1037750244140625 6 Carbamidomethyl (C) _VYQHDFC(Carbamidomethyl (C))GPY_ ENSG00000172324|ENST00000302040|OR5A2 13.90604991867851 0.3810395177745597 2 {M(Oxidation (M))|F}YVY 4 -1 41.67 0 0 3.244 0 0 694.2829457013687 0 694.2829457013687 0 5.728050365394424 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}YVY 3.244 - 169 NaN NaN 135756.1 NaN 11911 3385 15292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15300 66.848 NaN 543650 35 0 64371 0.327 + -1 YARSYNRCV 9 65 594.7844176462197 1187.5542823592393 2 595.8037719726562 MULTI HCD FTMS 0 0 0 15299 57229.7890625 0.3932500831817952 -2 0.05678558349609375 1 Carbamidomethyl (C) _YARSYNRC(Carbamidomethyl (C))V_ REV__tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1 7.910154910731844 0.2910521888787154 2 [YV]A{[MG]|[TS]}EP{I|L}Y 9 -1 26.326 0 0 2.2169 0 0 0 161.04759095840396 161.04759095840396 13.404565063028294 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 [YV]A{[MG]|[TS]}EP{I|L}Y 2.2169 - 590 NaN NaN 164535.6 NaN 11912 3386 15299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15301 66.852 NaN 327280 35 0 19702 0.261 + 2809 DYILNVMKF 9 69 579.7970207745442 1157.5794886158883 2 580.2977294921875 MULTI HCD FTMS 0 0 0 15299 77417.8203125 0.3064932527126228 8 -0.22580718994140625 2 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 65.47368725323818 0.010552856507075443 2 YD{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 2 + 103.33 0 0 8.9264 8.9264 93.279 0 0 0 85.37192209717617 16.478174818886373 16.478174818886373 9.208187539523749 0 3.1549471895720984 1.6989700043360187 0 0 YD{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};YD{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NVE[RH];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV[YG]{[DS]|[MA]|[CV]|TT};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}N{I|L}D[RH];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGVE[RH];{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}N[TA]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT};[NP]RHNV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 8.9264;8.131;8.0268;6.7134;5.7762;5.3929;4.8875;4.7647;4.6959;4.6708 -;-;+;-;-;-;-;-;-;- + 692 + NaN NaN 135175.6 NaN 11913 3386 15299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15302 66.856 NaN 244320 35 0 18137 0.262 + 11473 IYQGRLWAF 9 66 577.3109056947245 1152.607258456249 2 577.3104248046875 MULTI HCD FTMS 0 0 0 15299 68656.328125 0.3552824718834752 3 -0.084442138671875 3 Unmodified _IYQGRLWAF_ ENSG00000206047|ENST00000382692|DEFA1;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000240247|ENST00000382689|DEFA1B 39.957323273324995 0.06554068735427583 2 WA{M(Oxidation (M))|F} 3 6 33.188 0 0 2.8793 0 0 730.4110912764977 0 730.4110912764977 0 -5.3246091534035145 -5.3246091534035145 0 0 0.8494850021680094 0 0 0 + WA{M(Oxidation (M))|F} 2.8793 + + 60 NaN NaN 131296.8 NaN 11914 3386 15299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15303 66.86 NaN 89247 35 0 20901 0.263 + -1 RCQRIYGRVF 10 32 452.2430108583163 1353.707203175149 3 452.2430419921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _RC(Carbamidomethyl (C))QRIYGRVF_ REV__nc|ENSG00000228741|Q96N96-5|SPATA13 1.7422754331352037 0.46608156381052757 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.9184 0 0 1089.5607355710179 0 1089.5607355710179 0 22.47425010840047 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 1.9184 + + 7 NaN NaN 96156.7 NaN 11915 3386 15299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15304 66.863 NaN 128040 35 0 10711 0.261 + 16519 LTKEWFLL 8 58 525.3057918607641 NaN 0 525.3053588867188 PEAK HCD FTMS 0 0 0 15299 20885.353515625 0.5104306695422712 -1 0.02339935302734375 5 Unmodified _LTKEWFLL_ ENSG00000165338|ENST00000298068|HECTD2 5.230669730166228 0.38822285293237185 2 WQ 2 7 7.0783 0 0 0.67503 0 0 130.20649611944071 601.2274263971311 731.4339225165718 0 0 0 0 0 0 0 0 0 WQ 0.67503 - 5 + NaN NaN 101819.7 NaN 11916 3386 15299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15305 66.867 NaN 58393 35 0 4656.9 0.261 -1 0 46 484.4549865722656 NaN 0 484.4549865722656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.72341 0 0 130.8086830695625 719.3015230768186 850.1102061463812 0 0 0 0 0 0 0 0 0 {I|L} 0.72341 - 1 + NaN NaN 94626.3 NaN 11917 3386 15299 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15307 66.872 NaN 3473900 35 0 704310 0.326 + 5949 FPDPNVKYVF 10 118 613.3165566237965 1224.6185603143929 2 613.33251953125 MULTI HCD FTMS 0 0 0 15306 490341.9375 0.36410672694247515 18 -0.5177154541015625 1 Unmodified _FPDPNVKYVF_ ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENST00000529476.1_1_1:161011414-161013065:-|nuORF 47.05281240577143 0.08850780272539858 2 [YV]K[QA]QAS{I|L}A 10 10 55.667 0 0 4.5457 0 0 0 162.0250336369376 162.0250336369376 -7.3499797838910155 0 -7.3499797838910155 0 0 0 1.6989700043360187 1.2302046884880937 0 [YV]K[QA]QAS{I|L}A 4.5457 - 2991 NaN NaN 619350.1 NaN 11918 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15308 66.876 NaN 584320 35 0 60905 0.261 + 22428 QPYSQEWEL 9 82 590.2691787354943 1178.5238045377885 2 590.2698364257812 MULTI HCD FTMS 0 0 0 15306 232746.484375 0.8825395886838894 4 -0.12302398681640625 2 Unmodified _QPYSQEWEL_ ENSG00000103061|ENST00000263997|SLC7A6OS 32.78568957990786 0.09846250359632436 2 {[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))K]WE{I|L} 9 4 + 45.506 0 0 3.8613 3.8613 83.06 0 0 0 2.5283838020163074 11.24861439411255 2.5283838020163074 5.561799739838868 0 0.805462187404089 0 0.75 0.3807196863200844 {[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))K]WE{I|L};{[WN]|[YH]}[R{M(Oxidation (M))|F}]EPA{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))K]PA{M(Oxidation (M))|F}{I|L};{[WN]|[YH]}[SG][C(Carbamidomethyl (C))K]PA{M(Oxidation (M))|F}{I|L};[WE]E[HT]Y{[DS]|[MA]|[CV]|TT}{I|L};[WE]E{[QV]|[N{I|L}]|[RA]|[KV]}[DN]{M(Oxidation (M))|F}{I|L} 3.8613;3.3893;2.7812;2.5646;1.5136;0.58332 -;-;-;-;-;- 798 NaN NaN 182077.1 NaN 11919 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15309 66.88 NaN 340320 35 0 21202 0.261 + 20210 NYLHLDYNF 9 65 599.7803175023859 1197.5460820715716 2 599.7802734375 MULTI HCD FTMS 0 0 0 15306 295323.34375 0.2200368130190699 9 -0.265167236328125 3 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 80.6760300276096 0.005633624786464751 2 [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F} 9 0 + 89.548 0 0 7.4776 7.4776 91.165 0 0 0 22.376430167995878 79.37076236157729 22.376430167995878 9.208187539523749 0 2.1989700043360187 1.5228787452803376 0 0.4247425010840047 + + [YN]{I|L}H{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}DYGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYN{M(Oxidation (M))|F};[YN]{I|L}H{I|L}D{M(Oxidation (M))|F}[YN];{[{M(Oxidation (M))|F}D]|MM}KH{I|L}DYGG{M(Oxidation (M))|F};[YN]{I|L}HY{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F};[YN]{I|L}HY[{M(Oxidation (M))|F}V]{[QD]|[EN]|[WG]|[KD]|[RS]};{[{M(Oxidation (M))|F}D]|MM}KH{I|L}D{M(Oxidation (M))|F}[YN];{[{M(Oxidation (M))|F}D]|MM}YR[EP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}R[EP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.4776;6.7087;5.3485;5.0555;4.5796;4.3595;3.026;2.9264;2.3711;2.224 +;-;-;-;-;-;-;-;-;- + 545 NaN NaN 137495.2 NaN 11920 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15310 66.884 NaN 555180 35 0 55345 0.261 + 34780 YQSSEKSQF 9 79 552.2561248347023 NaN 0 552.2385864257812 PEAK HCD FTMS 0 0 0 15306 22168.15234375 0.5229907598665652 -1 0.02361297607421875 4 Unmodified _YQSSEKSQF_ APLF|p.L72F|1|0.28|ENSG00000169621|chr2:68502776-68502776|C/T|missense_variant 18.1463463914782 0.1998403495282098 2 QS[QT]{I|L}SQ 7 5 40.65 0 0 3.6871 0 0 165.08051853512194 162.02268396549064 327.1032025006126 0 0 0 0 0 0.6643943297944485 0 0.9392404878284264 0.28872548999643577 QS[QT]{I|L}SQ 3.6871 - 659 + NaN NaN 166953.2 NaN 11921 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15311 66.887 NaN 470840 35 0 95188 0.262 + 20125 NYIPYLTKLKF 11 59 467.2707544193761 1398.7904338583282 3 467.27117919921875 MULTI HCD FTMS 0 0 0 15306 216711.078125 0.2099275450370312 9 -0.265167236328125 5 Unmodified _NYIPYLTKLKF_ ENSG00000205413|ENST00000379958|SAMD9 7.846045518447754 0.3845105762037768 2 NY{I|L} 3 8 52.435 0 0 3.7486 0 0 0 1005.5771216572905 1005.5771216572905 45.98136244196333 0 0 0 0 0.9247425010840047 2 0 0 + NY{I|L} 3.7486 + + 19 + NaN NaN 151190.5 NaN 11922 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15312 66.89 NaN 244900 35 0 28958 0.261 + 965 AYEYTTIRR 9 63 586.8080389990008 NaN 0 586.7888793945312 PEAK HCD FTMS 0 0 0 15306 9185.72265625 0.48591684337597363 -1 0.02361297607421875 6 Unmodified _AYEYTTIRR_ ENSG00000168263|ENST00000382082|KCNV2 12.531546534597751 0.23452071659215576 2 KS{I|L}{M(Oxidation (M))|F}T 5 8 25.004 0 0 2.1342 0 0 317.1705691095265 275.10679041080317 592.2773595203297 0 0 0 0 0 0 0 0.5451140161145328 0 KS{I|L}{M(Oxidation (M))|F}T 2.1342 - 142 + NaN NaN 133024.3 NaN 11923 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15313 66.894 NaN 248440 35 0 38012 0.261 + 16944 LYHLCQMF 8 62 556.2570020193104 1110.4994511054208 2 556.7592163085938 MULTI HCD FTMS 0 0 0 15306 124104.0234375 1 0 0 7 Carbamidomethyl (C) _LYHLC(Carbamidomethyl (C))QMF_ ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 40.44857923139169 0.22516712537107883 2 {I|L}YGYVAE 7 6 72.062 0 0 6.4892 0 0 0 312.0974520318969 312.0974520318969 39.3590248250232 0 0 0 0 1.0114393726401687 2 0.28872548999643577 0 {I|L}YGYVAE 6.4892 - 172 + NaN NaN 140950.8 NaN 11924 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15314 66.897 NaN 281640 35 0 9120.4 0.261 + 16300 LQSCMFRNLF 10 76 629.8085219936265 1257.602491054053 2 629.8081665039062 MULTI HCD FTMS 0 0 0 15306 71376.40625 0.3518022269689601 9 -0.265167236328125 8 Unmodified _LQSCMFRNLF_ REV__ENSG00000103966|ENST00000220325|EHD4;REV__ENST00000569223.1_1_15:42235208-42264692:-|nuORF 17.11289562659939 0.35104376501799556 2 MHY 3 -1 26.198 0 0 2.0832 0 0 0 823.389922495975 823.389922495975 6.826352249336196 0 0 0 0 0 0 0 0 MHY 2.0832 - 188 + NaN NaN 138796.4 NaN 11925 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15315 66.9 NaN 196840 35 0 9056.4 0.261 -1 EYLTQMWHF 9 48 635.7816431654547 NaN 0 635.505859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _EYLTQM(Oxidation (M))WHF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 1.6526216038709556 0.28723846860855273 2 T{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.74546 0 0 405.1928506846219 613.2512911432249 1018.4441418278468 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 0.74546 - 5 + NaN NaN 138978.7 NaN 11926 3387 15306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15317 66.905 NaN 1436400 35 0 439040 0.327 -1 TAMDVVYAL 9 54 499.74673630115075 997.4789196691015 2 499.74700927734375 MULTI HCD FTMS 0 0 0 15316 759669.625 0.9308095484391515 5 -0.14196014404296875 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 44.40701690623563 0.04511410083598184 2 VYA{I|L} 4 -1 46.186 0 0 4.6302 0 0 533.2151217399016 0 533.2151217399016 0 18.738350322034236 0 0 0 1.4247425010840047 0 0 0 VYA{I|L} 4.6302 + + 46 NaN NaN 311409.4 NaN 11927 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15318 66.91 NaN 691040 35 0 61071 0.261 + 35078 YTVIERPPF 9 88 561.3022621053185 1120.589971277437 2 561.289306640625 MULTI HCD FTMS 0 0 0 15316 63646.0234375 0.39539381494615217 -6 0.18456268310546875 2 Unmodified _YTVIERPPF_ REV__ENSG00000077380|ENST00000397119|DYNC1I2;REV__nc|ENSG00000077380|Q13409-2|DYNC1I2;REV__nc|ENSG00000077380|Q13409-3|DYNC1I2;REV__nc|ENSG00000077380|Q13409-5|DYNC1I2;REV__nc|ENSG00000077380|Q13409-6|DYNC1I2;REV__nc|ENSG00000077380|Q13409-7|DYNC1I2 14.838274106304384 0.23215694253501695 2 YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 8 -1 46.847 0 0 4.1806 0 0 147.06203045888066 0 147.06203045888066 0 19.5800214418599 0 0 0 0.5 0 0.9247425010840047 0 YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 4.1806 - 818 + NaN NaN 189509.5 NaN 11928 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15319 66.914 NaN 798360 35 0 87948 0.261 + 7004 FPWNSHVVL 9 112 549.7894349155782 1097.5643168979564 2 549.7903442382812 MULTI HCD FTMS 0 0 0 15316 443098.78125 1 0 0 3 Unmodified _FPWNSHVVL_ ENSG00000103335|ENST00000301015|PIEZO1 23.789781309258295 0.1548179064208189 2 VV{I|L} 3 6 31.198 0 0 2.8425 0 0 768.33432634566 0 768.33432634566 0 8.061799739838875 0 0 0 0.5 0 0 0 + VV{I|L} 2.8425 + + 517 NaN NaN 216584.9 NaN 11929 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15320 66.917 NaN 649300 35 0 83780 0.261 + -1 MFLICVFCV 9 75 594.7844176462197 1187.5542823592393 2 595.28759765625 MULTI HCD FTMS 0 0 0 15316 261976.390625 1 0 0 4 2 Carbamidomethyl (C) _MFLIC(Carbamidomethyl (C))VFC(Carbamidomethyl (C))V_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 20.871210003555333 0.18003371494288972 2 [YV]A{[MG]|[TS]}E{I|L}{M(Oxidation (M))|F}MQ 10 -1 + 55.314 0 0 4.6578 4.6578 84.275 0 0 0 6.020599913279625 9.164539485499255 6.020599913279625 6.020599913279625 0 0.8252574989159953 1.6989700043360187 0.5 0 [YV]A{[MG]|[TS]}E{I|L}{M(Oxidation (M))|F}MQ;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[MG]|[TS]}E{I|L}{M(Oxidation (M))|F}MQ;[YV]A[WM]{I|L}{M(Oxidation (M))|F}MQ;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[WM]{I|L}{M(Oxidation (M))|F}MQ;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WT]|[RM]}E{I|L}{M(Oxidation (M))|F}MQ;[YV]AY[YG]{I|L}PDQ;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY[YG]{I|L}PDQ;[YV]AY[YG]{I|L}DPQ;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}][EP]{M(Oxidation (M))|F}MQ;[YN]{M(Oxidation (M))|F}PQ{I|L}R[HN] 4.6578;4.1508;4.0885;4.0026;4.0026;3.7525;3.2455;3.2455;3.0789;3.0622 -;-;-;-;-;-;-;-;-;- 1413 NaN NaN 189150 NaN 11930 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15321 66.921 NaN 221000 35 0 17502 0.262 + 25568 SFSEYFGAI 9 51 510.73767500934207 1019.4607970854842 2 510.73785400390625 MULTI HCD FTMS 0 0 0 15316 94899.3671875 0.5708264265751097 5 -0.14196014404296875 5 Unmodified _SFSEYFGAI_ ENSG00000085274|ENST00000349841|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-4|MYNN 11.640296217721598 0.25978676193971967 2 YA{I|L} 3 6 32.435 0 0 3.1816 0 0 654.2650218668819 0 654.2650218668819 0 6.704328361272971 0 0 0 0.9247425010840047 0 0 0 YA{I|L} 3.1816 - 89 NaN NaN 129993.2 NaN 11931 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15322 66.924 NaN 329350 35 0 10902 0.261 + 9923 IDFQNFTNIF 10 77 629.8085219936265 1257.602491054053 2 629.8223266601562 MULTI HCD FTMS 0 0 0 15316 32082.333984375 0.1581283947321889 10 -0.2842559814453125 6 Unmodified _IDFQNFTNIF_ tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1 19.361941925380144 0.3300069447713393 2 C{I|L}YH{I|L} 5 9 37.959 0 0 3.0183 0 0 610.3142582573412 0 610.3142582573412 0 4.313637641589878 0 0 0 0 0 0 0 C{I|L}YH{I|L} 3.0183 - 542 NaN NaN 136299.2 NaN 11932 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15323 66.927 NaN 242970 35 0 10384 0.261 + 6351 FPFYYEIKM 9 70 627.298453891388 1252.582354849576 2 627.2986450195312 MULTI HCD FTMS 0 0 0 15316 41641.85546875 0.044065799422244166 -36 0.9256973266601562 7 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 40.23920728925047 0.06424668180817725 2 {I|L}M{M(Oxidation (M))|F}Y[YE]{I|L} 7 4 53.465 0 0 4.2684 0 0 0 290.11774622135005 290.11774622135005 36.38698526850746 0 0 0 0 1.579689690656103 1.5228787452803376 0 0 {I|L}M{M(Oxidation (M))|F}Y[YE]{I|L} 4.2684 - 338 + NaN NaN 144748.8 NaN 11933 3388 15316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15325 66.932 NaN 4500200 35 0 985390 0.327 + 13998 KYSPFVVSF 9 95 537.2869228892054 1072.5592928452106 2 537.2874755859375 MULTI HCD FTMS 0 0 0 15324 1711783 0.46011958309010137 1 -0.03029632568359375 1 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 152.88595553498965 5.775426743015152E-06 2 [YK]SP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F} 9 0 + 94.421 0 0 8.8033 8.8033 94.412 0 0 0 7.00221055188473 38.99378566895023 7.00221055188473 11.492887666437142 0 3.1549471895720984 0 1.6663865622122673 0.3054621874040891 + + [YK]SP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VAA{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}AA{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}]{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[KS]YP{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SAA{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[VS]AA{M(Oxidation (M))|F}{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{M(Oxidation (M))|F}VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KVS{M(Oxidation (M))|F} 8.8033;7.7318;7.4988;7.4695;7.4322;7.0374;6.8393;6.7751;6.4711;6.2382 +;-;-;-;-;-;-;-;-;- + 2260 NaN NaN 584010.3 NaN 11934 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15326 66.937 NaN 1405100 35 0 164050 0.261 + 12759 KYDEIFYNL 9 95 602.7977562185981 1203.5809595039962 2 602.798095703125 MULTI HCD FTMS 0 0 0 15324 874757.25 0.109397221614986 11 -0.3142547607421875 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 110.79276546118962 0.0028129822227594098 2 {NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L} 9 4 + 84.324 0 0 7.0061 7.0061 85.886 0 0 0 5.119478172486467 13.068357650399435 5.119478172486467 0.5115252244738144 0 2.2059771852360797 0 1.5911290632962718 0.7302046884880937 {NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}KEYN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}KE{M(Oxidation (M))|F}YN{I|L} 7.0061;6.9636;6.9347;6.6118;6.5808;6.3386;6.2532;6.2411;6.2198;6.2107 -;-;-;-;-;+;-;-;-;- + 6410 NaN NaN 313532.3 NaN 11935 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15327 66.941 NaN 1646000 35 0 113750 0.261 + 24942 RYSVFFQSL 9 105 573.798279888378 1145.582006843556 2 573.7985229492188 MULTI HCD FTMS 0 0 0 15324 536043.1875 0.14813207992187216 6 -0.171234130859375 3 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 57.107585691075435 0.021627766313179933 2 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 9 3 + 75.231 0 0 6.567 6.567 89.55 0 0 0 5.241049764686139 18.513874343345194 5.241049764686139 9.208187539523749 0 1.610924374808178 1.3010299956639813 0.7059771852360797 0 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQ{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[YR]SV{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[Y{I|L}]KT[RD]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[AG]{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}S{M(Oxidation (M))|F}Q{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}[RD]G{M(Oxidation (M))|F};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L} 6.567;5.7632;5.7564;5.2765;5.1681;5.0509;4.9526;4.9346;4.6252;4.4727 -;-;-;-;-;-;-;-;-;- 9359 NaN NaN 344610.5 NaN 11936 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15328 66.944 NaN 1680300 35 0 217300 0.261 + 27124 SYMGHFDLL 9 111 541.7523669874173 1081.4901810416345 2 541.7528076171875 MULTI HCD FTMS 0 0 0 15324 437669.375 0.10342761769702544 -5 0.14122772216796875 4 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 115.6920309560759 0.002013163348980568 2 SYM[DP]P{I|L}{I|L} 8 4 63.982 0 0 5.9161 0 0 0 162.0231112115844 162.0231112115844 17.60167911865537 0 0 0 0 1.860924374808178 2 0.9489700043360187 0 SYM[DP]P{I|L}{I|L} 5.9161 - 1568 + NaN NaN 346236 NaN 11937 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15329 66.948 NaN 815000 35 0 93867 0.261 + 29190 TYKDYVDLF 9 94 582.2846911155348 1162.5548292978694 2 582.2847290039062 MULTI HCD FTMS 0 0 0 15324 103944.875 0.20178403009098625 -5 0.14122772216796875 5 Unmodified _TYKDYVDLF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 99.75527289724121 0.004270341300239591 2 [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F} 9 0 + 90.001 0 0 7.7416 7.7416 93.08 0 0 0 24.76203644159419 53.221740651475635 24.76203644159419 12.028937514676485 0 2.079689690656103 2 0.6307196863200843 1.055462187404089 + + [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F};[YT]K[YV]DD{I|L}{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{M(Oxidation (M))|F}{I|L};[YT][Q{I|L}][YT]D{I|L}{M(Oxidation (M))|F};[YT]K[YV]DD{M(Oxidation (M))|F}{I|L};[YT][Y{I|L}][QT]D{I|L}{M(Oxidation (M))|F};[YK]T{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}][YT]D{M(Oxidation (M))|F}{I|L};[YK]T[YV]DD{I|L}{M(Oxidation (M))|F};[YT][Y{I|L}][QT]D{M(Oxidation (M))|F}{I|L} 7.7416;6.7069;6.4892;6.153;5.4545;5.3321;5.3274;4.9006;4.2927;4.0797 +;-;-;-;-;-;-;-;-;- + 1857 NaN NaN 217724.9 NaN 11938 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15330 66.951 NaN 85440 35 0 5788 0.261 + 14509 LFCQLIWQY 9 47 607.3067626953125 NaN 0 607.3067626953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LFCQLIWQY_ REV__ENST00000416893.2_1_X:82253937-82254204:+|nuORF 4.75600775471527 0.27219989241163056 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102833.7 NaN 11939 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15331 66.954 NaN 177150 35 0 18060 0.261 + 1623 AYYDGQYDG 9 54 526.2026185303662 NaN 0 526.2029418945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _AYYDGQYDG_ REV__ENSG00000089116|ENST00000261731|LHX5 3.2813086475875832 0.27934607848455584 2 {M(Oxidation (M))|F} 1 -1 9.732 0 0 0.92651 0 0 685.1953849105386 215.10346399478752 900.298848905326 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 0.92651 - 31 + NaN NaN 111142.4 NaN 11940 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15332 66.958 NaN 255450 35 0 45565 0.261 + 22114 QIIEADEVL 9 50 515.2765576364958 1028.5385623397915 2 515.2772827148438 MULTI HCD FTMS 0 0 0 15324 23960.10546875 0.07301856864540923 -5 0.14122772216796875 8 Unmodified _QIIEADEVL_ ENSG00000155876|ENST00000380527|RRAGA 21.536976647645854 0.1742816388551942 2 EV{I|L} 3 6 40.445 0 0 3.9323 0 0 669.332811424025 0 669.332811424025 0 34.9607625286837 0 0 0 1 0 0.4247425010840047 0 + EV{I|L} 3.9323 + + 29 NaN NaN 126779.8 NaN 11941 3389 15324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15334 66.963 NaN 1157300 35 0 83996 0.327 + 24943 RYSVFFQSL 9 109 573.798279888378 1145.582006843556 2 573.796630859375 MULTI HCD FTMS 0 0 0 15333 390211.46875 0.10783242437029594 7 -0.1938323974609375 1 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 77.04852534044906 0.0068074265082511435 2 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 9 3 + 81.398 0 0 7.1053 7.1053 90.446 0 0 0 10.597718523607966 20.34195591137106 10.597718523607966 9.208187539523749 0 2.110924374808178 1.3979400086720375 0.6861818737241735 0.2614393726401688 [Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]KT{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};[YK]{I|L}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]S{I|L};[YR]SV{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}[RD]G{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L};[Y{I|L}]KT[RD]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Q[WE]RQS{I|L};[YR]S{I|L}[VS]A{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 7.1053;6.3015;6.1021;5.2983;5.2388;4.9798;4.84;4.7171;4.3289;4.1649 -;-;-;-;-;-;-;-;-;- 8148 NaN NaN 263290.8 NaN 11942 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15335 66.968 NaN 1183500 35 0 173130 0.263 + 29263 TYLPAPEGLKF 11 83 618.3370247329226 1234.659496532645 2 618.838623046875 MULTI HCD FTMS 0 0 0 15333 170499.953125 0.3508853780762048 -4 0.11473846435546875 2 Unmodified _TYLPAPEGLKF_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 49.74193281347159 0.08247801322054248 2 [YT]{I|L}PA[EP]{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 11 0 + 46.206 0 0 3.7424 3.7424 89.765 0 0 0 28.018569717598787 0.8040080860225132 0.8040080860225132 46.20615734384291 0 2.254432191740108 1.6989700043360187 0 0.3494850021680094 + + [YT]{I|L}PA[EP]{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 3.7424 + + 462 + NaN NaN 268826 NaN 11943 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15336 66.973 NaN 971910 35 0 107710 0.262 + 29191 TYKDYVDLF 9 98 582.2846911155348 1162.5548292978694 2 582.7862548828125 MULTI HCD FTMS 0 0 0 15333 229858.9375 0.7832363359313481 -4 0.11473846435546875 3 Unmodified _TYKDYVDLF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 93.16586880292088 0.00444300900000894 2 [YT]KDYVD{I|L}{M(Oxidation (M))|F} 9 0 + 96.155 0 0 8.271 8.271 94 0 0 0 21.751736484954378 65.43232140729077 21.751736484954378 12.425091941556389 0 2.274227503252014 1.6989700043360187 0.3494850021680094 1.086696871556164 + + [YT]KDYVD{I|L}{M(Oxidation (M))|F};[YT]KDYVD{M(Oxidation (M))|F}{I|L};[YK]TDYVD{I|L}{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}T]{[SA]|[TG]}VD{I|L}{M(Oxidation (M))|F};[YK]TDYVD{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[KT]YVD{I|L}{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}T][VS]AD{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[KT]YVD{M(Oxidation (M))|F}{I|L};[YT]KD{I|L}V{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}V[MT]YK{M(Oxidation (M))|F} 8.271;7.2023;6.0779;5.5284;5.0091;4.8106;4.3297;3.7418;3.7237;3.2855 +;-;-;-;-;-;-;-;-;- + 2541 NaN NaN 234514.9 NaN 11944 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15337 66.976 NaN 372720 35 0 43301 0.261 + 10116 IFIQNSKLYF 10 61 636.8527037116027 1271.6908544900052 2 636.8533935546875 MULTI HCD FTMS 0 0 0 15333 131360.296875 0.7034398780255359 -4 0.11473846435546875 4 Unmodified _IFIQNSKLYF_ ENSG00000138459|ENST00000492406|SLC35A5 67.83816525789305 0.020146919733137328 2 {I|L}Y{M(Oxidation (M))|F} 3 7 31.198 0 0 2.4533 0 0 830.4631214826187 0 830.4631214826187 0 -0.044321917401077826 -0.044321917401077826 0 0 0.5 0 0 0 + {I|L}Y{M(Oxidation (M))|F} 2.4533 + + 73 NaN NaN 156979.8 NaN 11945 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15338 66.98 NaN 411700 35 0 123550 0.264 + 7662 FYIWRPLRI 9 46 421.91659722801535 1262.7279622842461 3 421.9165954589844 MULTI HCD FTMS 0 0 0 15333 114931.5546875 0.46602849687391223 3 -0.0846099853515625 5 Unmodified _FYIWRPLRI_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 10.799506525563784 0.2670509983294061 2 YE 2 8 25.217 0 0 1.997 0 0 952.5962522936152 0 952.5962522936152 0 9.731975075880328 0 0 0 0.4247425010840047 0 0 0 YE 1.997 - 7 NaN NaN 171001.1 NaN 11946 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15339 66.983 NaN 173610 35 0 21942 0.261 + 21805 QALLDLHAL 9 48 497.2898317875853 992.5651106419706 2 497.2901611328125 MULTI HCD FTMS 0 0 0 15333 75362.796875 0.5086416110267398 2 -0.06487274169921875 6 Unmodified _QALLDLHAL_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 37.97399986684836 0.07464525285885698 2 [QA]{I|L}{I|L}D{I|L} 6 3 29.882 0 0 3.0106 0 0 0 336.1673678033813 336.1673678033813 1.8618187372417339 0 0 0 0 0.7742275032520141 0 0 0 + [QA]{I|L}{I|L}D{I|L} 3.0106 + + 62 + NaN NaN 119480.4 NaN 11947 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15340 66.986 NaN 73041 35 0 4677.1 0.261 + 20644 PFHNRVPL 8 33 490.2762759979269 978.5379990626539 2 490.2764892578125 MULTI HCD FTMS 0 0 0 15333 7449.72900390625 0.0884346536320968 12 -0.3403778076171875 7 Unmodified _PFHNRVPL_ REV__ENST00000547063.5_1_12:112568363-112572820:+|nuORF 5.230669730166228 0.5342319408533849 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93867.5 NaN 11948 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15341 66.99 NaN 119450 35 0 14169 0.261 + -1 TLIAAVVAM 9 47 452.76214669305534 NaN 0 452.8807067871094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _TLIAAVVAM(Oxidation (M))_ REV__ENSG00000041880|ENST00000398755|PARP3;REV__nc|ENSG00000041880|Q9Y6F1-2|PARP3 7.910154910731844 0.25691533546754686 2 V 1 -1 10.713 0 0 1.1857 0 0 335.1518163492746 466.2668551080688 801.4186714573434 0 0 0 0 0 0.7614393726401688 0 0 0 V 1.1857 + + 2 + NaN NaN 114204.6 NaN 11949 3390 15333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15343 66.994 NaN 1080000 35 0 62021 0.327 + 27211 SYNNFFRMF 9 96 621.2737767427004 1240.5330005522007 2 621.2739868164062 MULTI HCD FTMS 0 0 0 15342 644902.4375 0.11679311433937481 27 -0.7718887329101562 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 157.7952019732125 5.857147217999733E-07 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 93.176 0 0 7.5109 7.5109 91.215 0 0 0 11.020599913279625 16.478174818886373 11.020599913279625 9.208187539523749 0 3 0 1.336696871556164 1.8996498648046138 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT];{[{M(Oxidation (M))|F}C]|[YS]}[HQ]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}N[QP]{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}NGG[MT] 7.5109;6.7687;6.6226;6.5359;5.8803;5.1479;4.0898;3.4075;3.3597;3.3511 +;-;-;-;-;-;-;-;-;- + 1998 NaN NaN 261736.8 NaN 11950 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15344 66.999 NaN 418820 35 0 66512 0.261 + 35577 YYIDKLEYL 9 65 610.3158416599185 1218.617130386637 2 610.3159790039062 MULTI HCD FTMS 0 0 0 15342 198464.859375 0.0718839805802825 13 -0.36817169189453125 2 Unmodified _YYIDKLEYL_ ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 59.368380827593164 0.01846506874148156 2 YY{I|L}DK{I|L}EY{I|L} 9 0 + 73.941 0 0 6.0676 6.0676 86.039 0 0 0 24.621892823592972 48.746520974399346 24.621892823592972 4.771212547196626 0 2.142159058960253 2 0 0 + + YY{I|L}DK{I|L}EY{I|L};YY{I|L}DK{I|L}E{I|L}Y;YY{I|L}DK[YE]{I|L}{I|L};YY{I|L}[YE]{I|L}DK{I|L};YY{I|L}[YE]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L} 6.0676;5.6761;4.7105;4.0482;3.2506 +;-;-;-;- + 398 NaN NaN 151238.8 NaN 11951 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15345 67.003 NaN 644740 35 0 76084 0.261 + 14032 KYTSYILAF 9 94 553.2998008355627 1104.5850487379253 2 553.2999877929688 MULTI HCD FTMS 0 0 0 15342 223479.3125 1 0 0 3 Unmodified _KYTSYILAF_ ENSG00000111537|ENST00000229135|IFNG 36.506200033944 0.08138327636155518 2 [YT]KC{M(Oxidation (M))|F}{I|L}{I|L}A 8 5 48.074 0 0 4.3522 0 0 0 162.05574462231678 162.05574462231678 9.805205570626384 0 0 0 0 2.094187677400525 2 0 0 [YT]KC{M(Oxidation (M))|F}{I|L}{I|L}A 4.3522 - 1548 NaN NaN 194239.5 NaN 11952 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15346 67.006 NaN 381040 35 0 42126 0.261 + 21459 PWVTRDIVE 9 79 557.798126514421 1113.581700095642 2 557.7822265625 MULTI HCD FTMS 0 0 0 15342 14191.6396484375 0.06698010832273432 -11 0.32270050048828125 4 Unmodified _PWVTRDIVE_ REV__ENST00000392432.6_1_3:194308694-194308883:-|nuORF 7.910154910731844 0.2910521888787154 2 {I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 21.956 0 0 1.9716 0 0 574.3407551534995 0 574.3407551534995 0 1.0475750727131583 0 0 0 0.805462187404089 0 0 0 {I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9716 - 420 + NaN NaN 157020.5 NaN 11953 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15347 67.009 NaN 478470 35 0 43400 0.261 -1 FPAGYMYPSM 10 80 590.2460169250976 1178.477480916995 2 590.2477416992188 MULTI HCD FTMS 0 0 0 15342 98977.0625 0.4971584920237643 22 -0.6243972778320312 5 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 39.957323273324995 0.14577711486213385 2 {[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}WYA{I|L}M 9 -1 + 47.617 0 0 4.0406 4.0406 86.526 0 0 0 5.869142672542758 31.006696477547205 5.869142672542758 9.759402531177408 0 0.8807196863200843 0 0.6237125054200234 0 {[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}WYA{I|L}M;[YV]S{M(Oxidation (M))|F}WYPSM;{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}W{M(Oxidation (M))|F}S{I|L}M;{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}{[DA]|[EG]}YPSM;ME[HV]{M(Oxidation (M))|F}[VS]AEM;[WY]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}VPSM;[YV]S{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}V[WE];E[YG]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}C]|[YS]}VPSM;[YV]AY{[{M(Oxidation (M))|F}C]|[YS]}V[WE];E[YG]{M(Oxidation (M))|F}W{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L} 4.0406;3.2124;2.8884;2.5891;2.3149;2.0045;1.9781;1.9657;1.6621;1.4559 -;-;-;-;-;-;-;-;-;- 617 NaN NaN 163733.5 NaN 11954 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15348 67.013 NaN 187240 35 0 12392 0.261 + 1497 AYTSQFVSL 9 55 508.2580133864167 1014.5014738396334 2 508.2580261230469 MULTI HCD FTMS 0 0 0 15342 33266.53515625 0.7716981379984332 1 -0.0329742431640625 6 Unmodified _AYTSQFVSL_ ENSG00000198380|ENST00000357308|GFPT1;nc|ENSG00000198380|Q06210-2|GFPT1 14.405379775768559 0.2358970535022398 2 {M(Oxidation (M))|F}VS{I|L} 4 5 40.662 0 0 4.0081 0 0 550.238621362339 0 550.238621362339 0 31.197887582883936 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}VS{I|L} 4.0081 + + 85 NaN NaN 116261.9 NaN 11955 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15349 67.016 NaN 274010 35 0 22311 0.261 -1 LTIVSMACVGF 11 72 578.7919771333146 1155.5694013334291 2 579.288818359375 MULTI HCD FTMS 0 0 0 15342 23813.779296875 0.4096255695293651 -4 0.12302398681640625 7 Oxidation (M) _LTIVSM(Oxidation (M))ACVGF_ KIR3DL2|p.V5I|1|0.19|ENSG00000240403|chr19:54850488-54850488|G/A|missense_variant 22.736283301280096 0.2589804299186601 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}R{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F} 10 -1 + 52.56 0 0 4.5484 4.5484 83.311 0 0 0 3.82787469105822 3.82787469105822 3.82787469105822 3.82787469105822 0 1.5629529932484498 1.6989700043360187 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}R{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F};[Y{I|L}]DR{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}R{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}G{M(Oxidation (M))|F};[Y{I|L}]DR{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VG]{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}R{I|L}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VG]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}R[KG][NS]G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[VG]{I|L}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[YK]QQ{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F} 4.5484;4.2171;4.2017;3.8704;3.7553;3.6156;3.4048;2.8198;2.8187;2.8181 -;-;-;-;-;-;-;-;-;- 197 NaN NaN 131400.6 NaN 11956 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15350 67.019 NaN 130330 35 0 11840 0.261 -1 YTGYPMFMPY 10 53 643.2681578695167 1284.5217628058333 2 643.76953125 MULTI HCD FTMS 0 0 0 15342 23322.087890625 0.30248509829662684 3 -0.07917022705078125 8 Oxidation (M) _YTGYPM(Oxidation (M))FMPY_ ENSG00000164900|ENST00000297537|GBX1;ENSG00000168505|ENST00000306318|GBX2 6.2057823575117 0.44245551207394906 2 EVY 3 -1 36.198 0 0 2.818 0 0 875.3533802716812 0 875.3533802716812 0 29.20818753952375 0 0 0 1 0 0 0 EVY 2.818 - 18 NaN NaN 110003.3 NaN 11957 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15351 67.023 NaN 137270 35 0 15348 0.263 + -1 CYNPDMHV 8 52 526.2026185303662 NaN 0 525.783935546875 PEAK HCD FTMS 0 0 0 15342 21977.517578125 0.3255154677348695 7 -0.19500732421875 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))YNPDM(Oxidation (M))HV_ REV__nc|ENSG00000175182|Q6UXB0-1|FAM131A 0.7936320650641473 0.38822285293237185 2 SW 2 -1 6.4537 0 0 0.6144 0 0 130.93824379725726 643.3211763971311 774.2594201943884 0 0 0 0 0 0 0 0 0 SW 0.6144 - 4 + NaN NaN 115786.6 NaN 11958 3391 15342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15353 67.027 NaN 498090 35 0 28658 0.327 + 2922 DYSPYFKTI 9 94 567.2792195549672 1132.5438861767343 2 567.2791748046875 MULTI HCD FTMS 0 0 0 15352 226315.875 0.010763809455412275 154 -4.035072326660156 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 71.70789743142352 0.008535567138151097 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 {[YD]|[{M(Oxidation (M))|F}M]} + + 41.193 22.843 8.2143 3.6372 3.6372 60.572 0 0 0 0 9.952431874516833 0 0 0 1.9802046884880937 0 0.9876954943324545 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 3.6372 + + 344 + NaN NaN 166515.4 NaN 11959 3392 15352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15354 67.032 NaN 520530 35 0 64514 0.261 -1 LWGMFLMMK 9 67 594.7844176462197 1187.5542823592393 2 595.3019409179688 MULTI HCD FTMS 0 0 0 15352 74390.9921875 0.28396067298287675 4 -0.10916900634765625 2 2 Oxidation (M) _LWGM(Oxidation (M))FLM(Oxidation (M))MK_ ENST00000357881.8_1_12:106995076-107075774:+|nuORF;ENST00000392842.5_1_12:106976790-107075774:+|nuORF;ENST00000549040.5_1_12:106977470-107075774:+|nuORF 12.531546534597751 0.2520865569484384 2 [YN]{M(Oxidation (M))|F}{I|L}WW{M(Oxidation (M))|F}{I|L} 8 -1 + 37.668 0 0 3.1719 3.1719 82.598 0 0 0 5.835682082013776 7.085069448096775 5.835682082013776 5.835682082013776 0 0.8494850021680094 1.154901959985743 0 0 [YN]{M(Oxidation (M))|F}{I|L}WW{M(Oxidation (M))|F}{I|L};[YV]AY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L};[YV]A[WM]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WW{M(Oxidation (M))|F}{I|L};[YV]AY[PG]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YV]A[WM]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY[PG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[WM]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}]WW{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VY[PG]{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.1719;2.6805;2.6375;2.5989;2.5753;2.5322;2.1736;2.1305;2.092;2.0683 -;-;-;-;-;-;-;-;-;- 357 NaN NaN 171348.8 NaN 11960 3392 15352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15355 67.036 NaN 446210 35 0 40208 0.261 + 5763 FPAGYMYPSM 10 87 590.2460169250976 1178.477480916995 2 590.24609375 MULTI HCD FTMS 0 0 0 15352 75462.671875 0.3790464902255422 23 -0.6569747924804688 3 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 54.773552608820026 0.0604291769046433 2 M{[DS]|[MA]|[CV]|TT}YWYPSM 9 4 + 58.082 0 0 4.9286 4.9286 85.099 0 0 0 42.50894362433556 4.2382489052376116 4.2382489052376116 6.9897000433601875 0 0.6237125054200234 0 1.4731975075880328 0 M{[DS]|[MA]|[CV]|TT}YWYPSM;M{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{[DA]|[EG]}YPSM;M[YG][PS]{M(Oxidation (M))|F}YPSM;M{[DS]|[MA]|[CV]|TT}YW{M(Oxidation (M))|F}AEM;M{M(Oxidation (M))|F}A[VS]{M(Oxidation (M))|F}Y[WE];{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}{[DA]|[EG]}YPSM;M{[DS]|[MA]|[CV]|TT}Y{M(Oxidation (M))|F}[W{I|L}]SM;[WY][VS]{M(Oxidation (M))|F}YPSM;MEHV{M(Oxidation (M))|F}[VS]AEM;{[YD]|[{M(Oxidation (M))|F}M]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}[W{I|L}]SM 4.9286;4.3355;4.2559;4.2153;4.1487;4.0465;3.8039;3.7703;3.6027;3.2633 -;-;-;-;-;-;-;-;-;- 1255 + NaN NaN 160583.8 NaN 11961 3392 15352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15356 67.039 NaN 204310 35 0 11819 0.261 + 20211 NYLHLDYNF 9 64 599.7803175023859 1197.5460820715716 2 599.7799682617188 MULTI HCD FTMS 0 0 0 15352 77655.7109375 0.05785900609970873 14 -0.398193359375 4 Unmodified _NYLHLDYNF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF 24.990960013464015 0.14443998892849796 2 [YN][H{I|L}]{NN|[MP]|[D{I|L}]|[EV]}YN{M(Oxidation (M))|F} 9 0 + 45.462 0 0 3.7963 3.7963 83.383 0 0 0 10.769247883750914 22.27439786207082 10.769247883750914 6.505149978319899 0 0.9247425010840047 1.6989700043360187 0 0.3494850021680094 + + [YN][H{I|L}]{NN|[MP]|[D{I|L}]|[EV]}YN{M(Oxidation (M))|F};[YN][H{I|L}]{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}N;[YN][H{I|L}]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}YN 3.7963;3.2531;2.7503 +;-;- + 98 NaN NaN 122195.5 NaN 11962 3392 15352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15357 67.042 NaN 199200 35 0 36944 0.263 + 23203 RFLNDPGHLLW 11 55 456.57865725541933 1366.714142366458 3 456.5785827636719 MULTI HCD FTMS 0 0 0 15352 26765.833984375 0.007571993291469658 72 -1.94598388671875 5 Unmodified _RFLNDPGHLLW_ ENSG00000241370|ENST00000442966|RPP21;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;ENST00000498414.5_1_6:30314081-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21 13.51866281300042 0.33929385944539686 2 W 1 10 20.485 0 0 1.4988 0 0 1162.6243271582532 0 1162.6243271582532 0 7.385606273598313 0 0 0 0.5 0 0 0 + W 1.4988 + + 43 + NaN NaN 114082.8 NaN 11963 3392 15352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15359 67.047 NaN 1338800 35 0 231210 0.326 -1 TAMDVVYAL 9 75 499.74673630115075 997.4789196691015 2 499.7469787597656 MULTI HCD FTMS 0 0 0 15358 384355.625 0.4709440445855629 10 -0.27901458740234375 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 53.57557251787612 0.02656881086235134 2 VYA{I|L} 4 -1 37.964 0 0 3.806 0 0 533.2155286477215 0 533.2155286477215 0 3.3302769598221005 0 0 0 1.3807196863200843 0 0 0 VYA{I|L} 3.806 + + 140 NaN NaN 296670.6 NaN 11964 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15360 67.052 NaN 791620 35 0 54894 0.261 + 29252 TYLNYVVHL 9 94 561.3022621053185 1120.589971277437 2 561.2890014648438 MULTI HCD FTMS 0 0 0 15358 132758.453125 0.8247470684321757 -1 0.01973724365234375 2 Unmodified _TYLNYVVHL_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 69.10491478415734 0.009377850133389008 2 [YT]{I|L}NYVV[H{I|L}] 9 0 + 56.408 0 0 5.0338 5.0338 87 0 0 0 28.220682647160793 2.854093192711183 2.854093192711183 9.208187539523749 0 1.9575520115309921 1.6989700043360187 0 0 + + [YT]{I|L}NYVV[H{I|L}];[YT]{I|L}GGYVV[H{I|L}];[YT]{M(Oxidation (M))|F}KDVV[H{I|L}];{M(Oxidation (M))|F}YTKDVV[H{I|L}];HHHKDVV[H{I|L}];[Y{I|L}]{I|L}[HV][KG]YE 5.0338;4.2121;3.7734;2.9749;1.4081;0.48545 +;-;-;-;-;- + 738 + NaN NaN 208660.4 NaN 11965 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15361 67.055 NaN 790440 35 0 102650 0.261 + 16168 LPVEEEAVTL 10 90 550.2983902762965 1098.5822276193928 2 550.2973022460938 MULTI HCD FTMS 0 0 0 15358 251431.921875 0.7309822517096833 -1 0.01973724365234375 3 Unmodified _LPVEEEAVTL_ ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 34.40172386719151 0.19398797222092762 2 AVT{I|L} 4 6 45.31 0 0 4.1244 0 0 696.3307972638687 0 696.3307972638687 0 23.473936379523565 0 0 0 1.3494850021680094 0 0.28872548999643577 0 + AVT{I|L} 4.1244 + + 269 NaN NaN 209163.4 NaN 11966 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15362 67.059 NaN 380150 35 0 28037 0.261 + 11378 IYNQVNVVL 9 84 531.3030988603222 1060.5916447874442 2 531.3029174804688 MULTI HCD FTMS 0 0 0 15358 65577.296875 0.6831490459760882 -2 0.05271148681640625 4 Unmodified _IYNQVNVVL_ ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF 34.10243960390752 0.09241788333544565 2 NVV{I|L} 4 5 46.23 0 0 4.3589 0 0 617.3170491280914 0 617.3170491280914 0 25.35280958067105 0 0 0 1.3807196863200843 0 0 0.3494850021680094 + NVV{I|L} 4.3589 + + 309 NaN NaN 151010.2 NaN 11967 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15363 67.062 NaN 344610 35 0 59408 0.261 + 20126 NYIPYLTKLKF 11 54 467.2707544193761 1398.7904338583282 3 467.2710266113281 MULTI HCD FTMS 0 0 0 15358 80302.125 0.07778849197909138 15 -0.42838287353515625 5 Unmodified _NYIPYLTKLKF_ ENSG00000205413|ENST00000379958|SAMD9 10.016264844850085 0.3698103677728216 2 NY{I|L} 3 8 49.922 0 0 3.5689 0 0 0 1005.5772935924803 1005.5772935924803 42.93182501400722 0 0 0 0 0.8494850021680094 2 0 0 + NY{I|L} 3.5689 + + 64 + NaN NaN 135834.3 NaN 11968 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15364 67.065 NaN 182320 35 0 23405 0.261 -1 LYHLCQMF 8 62 556.2570020193104 1110.4994511054208 2 556.2576904296875 MULTI HCD FTMS 0 0 0 15358 44649.65234375 0.23923581160937316 5 -0.14229583740234375 6 Carbamidomethyl (C) _LYHLC(Carbamidomethyl (C))QMF_ ENSG00000087269|ENST00000416614|NOP14;nc|ENSG00000087269|P78316-2|NOP14 24.67388899826682 0.4122521268485776 2 {I|L}Y 2 -1 37.435 0 0 3.371 0 0 0 831.329163543568 831.329163543568 35.21652514092061 0 0 0 0 0.4247425010840047 2 0 0 {I|L}Y 3.371 + + 28 + NaN NaN 113852.5 NaN 11969 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15365 67.069 NaN 121700 35 0 22704 0.262 -1 0 48 453.34365256871973 NaN 0 453.3441162109375 PEAK HCD FTMS 0 0 0 15358 25193.1484375 0.6257479664597446 -1 0.01973724365234375 7 NaN NaN 2 V 1 -1 3.0989 0 0 0.34255 0 0 336.3137536574645 466.26731287174067 802.5810665292051 0 0 0 0 0 0 0 0 0 V 0.34255 - 2 + NaN NaN 105347 NaN 11970 3393 15358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15367 67.074 NaN 1781400 35 0 333270 0.327 + 13999 KYSPFVVSF 9 90 537.2869228892054 1072.5592928452106 2 537.287353515625 MULTI HCD FTMS 0 0 0 15366 1009240 0.27127917968448917 6 -0.17288970947265625 1 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 118.0683919894846 0.0016252157255221692 2 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 73.403 0 0 6.8437 6.8437 91.109 0 0 0 26.724264932237276 13.449551033086792 13.449551033086792 10.814447763750337 0 2.774227503252014 0 1.6329131673969606 0 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[YK]SV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]N[YV]VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYPKS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}VYPKS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SVYPKS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]GG[YV]VVS{M(Oxidation (M))|F};[YK]SV[{M(Oxidation (M))|F}V]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYV{[NV]|[RG]}{M(Oxidation (M))|F};[VS]Y[{M(Oxidation (M))|F}V]PKS{M(Oxidation (M))|F} 6.8437;5.8354;5.4324;5.2025;4.9695;4.6525;4.5739;4.1677;4.0021;3.922 +;-;-;-;-;-;-;-;-;- + 996 + NaN NaN 361314.7 NaN 11971 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15368 67.078 NaN 1040500 35 0 115330 0.261 + 12760 KYDEIFYNL 9 92 602.7977562185981 1203.5809595039962 2 602.7980346679688 MULTI HCD FTMS 0 0 0 15366 496554.71875 0.062099178499018776 16 -0.45611572265625 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 107.09958533191995 0.0034159042678574016 2 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L} 9 4 + 81.548 0 0 6.7754 6.7754 85.894 0 0 0 3.3298545145924265 14.73074980804634 3.3298545145924265 1.5381075863513018 0 1.8252574989159953 0 0.9436726795685342 0.9456290139465234 {NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};[YK]DE{I|L}{M(Oxidation (M))|F}YN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}KE{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}EYK{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}EK{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L} 6.7754;6.6477;6.6472;6.5915;6.4988;6.263;6.2503;6.0104;5.9503;5.8862 -;-;-;-;+;-;-;-;-;- + 6834 NaN NaN 248165.3 NaN 11972 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15369 67.082 NaN 1555400 35 0 264460 0.263 + 14231 LAYHLAVVL 9 88 499.8051530096181 997.5957530860362 2 499.8055114746094 MULTI HCD FTMS 0 0 0 15366 527258.75 1 0 0 3 Unmodified _LAYHLAVVL_ ENSG00000132517|ENST00000254853|SLC52A1;ENSG00000185803|ENST00000643944|SLC52A2;ENST00000573674.1_1_17:4936254-4937771:-|nuORF;ENST00000575919.1_1_17:4936703-4937901:-|nuORF 45.7499826716795 0.03894913563566938 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]AVV{I|L} 9 2 + 48.299 0 0 4.8415 4.8415 84.951 0 0 0 11.259556258252559 24.997906580286795 11.259556258252559 6.9897000433601875 0 0.9247425010840047 1.3979400086720375 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]AVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]AV{I|L}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]G{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]G{I|L}{I|L}V;[{I|L}A]Y[H{I|L}]AVV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[H{I|L}]GV{I|L}{I|L};[{I|L}V][QA]WAVV{I|L};VV[{M(Oxidation (M))|F}V][HS]VV{I|L};[{I|L}A]Y[H{I|L}]AV{I|L}V;[{I|L}A]Y[H{I|L}]G{I|L}V{I|L} 4.8415;4.1409;4.114;3.4133;3.187;3.1345;2.7183;2.667;2.4864;2.4595 -;-;-;-;+;-;-;-;-;- + 516 NaN NaN 346016.8 NaN 11973 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15370 67.085 NaN 770330 35 0 89600 0.261 + 16169 LPVEEEAVTL 10 84 550.2983902762965 1098.5822276193928 2 550.299072265625 MULTI HCD FTMS 0 0 0 15366 343964.46875 1 0 0 4 Unmodified _LPVEEEAVTL_ ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 27.628801355627647 0.2527626205058048 2 EAVT{I|L} 5 5 43.945 0 0 4.0002 0 0 567.2914295880875 0 567.2914295880875 0 21.426426839045533 0 0 0 1 0 0.28872548999643577 0 + EAVT{I|L} 4.0002 + + 150 NaN NaN 198961.7 NaN 11974 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15371 67.089 NaN 224100 35 0 21910 0.261 + 16460 LSRYFLLN 8 61 513.2916638493975 1024.568774765595 2 512.787109375 MULTI HCD FTMS 0 0 0 15366 130628.140625 0.7531869356920852 -5 0.14136505126953125 5 Unmodified _LSRYFLLN_ REV__ENST00000590137.1_1_17:74143442-74143655:+|nuORF 24.67388899826682 0.4122521268485776 2 N[YK]E{I|L}N{I|L} 7 -1 25.52 0 0 2.4908 0 0 132.10793350978548 0 132.10793350978548 0 2.5881915389386023 0 0 0 0.12371250542002349 0 0 1.1307196863200843 N[YK]E{I|L}N{I|L} 2.4908 - 158 + NaN NaN 129648.2 NaN 11975 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15372 67.092 NaN 155770 35 0 7110 0.261 + 9792 HYLEVGPMLAE 11 57 629.8091483714101 NaN 0 629.82177734375 PEAK HCD FTMS 0 0 0 15366 34403.26171875 0.5480597695907938 -8 0.22580718994140625 6 Unmodified _HYLEVGPMLAE_ REV__ENSG00000130052|ENST00000374599|STARD8;REV__nc|ENSG00000130052|Q92502|STARD8 5.731851221503515 0.3258605322397891 2 HY{I|L} 3 -1 12.307 0 0 0.97862 0 0 131.0656230538121 710.3034762018186 841.3690992556308 0 0 0 0 0 0 0 0 0 HY{I|L} 0.97862 + + 14 + NaN NaN 118594.3 NaN 11976 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15373 67.095 NaN 122910 35 0 15484 0.262 + 22176 QLASAHAPAW 10 48 526.268088337669 1050.521623742138 2 526.2684936523438 MULTI HCD FTMS 0 0 0 15366 34006.9921875 0.7193162810666034 2 -0.0629730224609375 7 Unmodified _QLASAHAPAW_ REV__ENST00000533478.5_1_16:81157348-81174942:-|nuORF;REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2;REV__nc|ENSG00000166473|Q7Z442|PKD1L2 3.944395688203298 0.4544253912184634 2 W{[CP]|[EA]} 3 -1 7.4473 0 0 0.70891 0 0 646.344041892775 0 646.344041892775 0 0.45757490560674974 0 0 0 0 0 0 0 W{[CP]|[EA]} 0.70891 - 2 NaN NaN 112640.3 NaN 11977 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15374 67.099 NaN 237010 35 0 19585 0.261 -1 KYMDINFDF 9 54 604.7681072670384 1207.5216616008768 2 605.7699584960938 MULTI HCD FTMS 0 0 0 15366 35948.96484375 0.04322768580774369 72 -1.95538330078125 8 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 28.494509381512117 0.11816142465008336 2 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4 -1 36.242 0 0 3.0014 0 0 666.3024049397502 0 666.3024049397502 0 20.83613437787733 0 0 0 1.3494850021680094 0 0.805462187404089 0 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 3.0014 + + 139 + NaN NaN 134808 NaN 11978 3394 15366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15376 67.104 NaN 4729900 35 0 771390 0.327 + 27125 SYMGHFDLL 9 110 541.7523669874173 1081.4901810416345 2 541.7529296875 MULTI HCD FTMS 0 0 0 15375 3600583.5 0.8508700745265025 1 -0.03310394287109375 1 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 115.6920309560759 0.002013163348980568 2 SYM{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 81.677 0 0 7.5523 7.5523 94.795 0 0 0 23.181581120140976 18.23332909998181 18.23332909998181 27.290212811356447 0 2.5356668758921828 2 1.6610892374447828 0 + + SYM{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}M{[HG]|PP}{M(Oxidation (M))|F}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{M(Oxidation (M))|F}D{I|L}{I|L};SY[YV]{[HG]|PP}P{I|L}{M(Oxidation (M))|F};SY{[QV]|[N{I|L}]|[RA]|[KV]}YY{I|L}{M(Oxidation (M))|F};SY[YV][YR][MT];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[DP]C{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}M[YR]SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}M{[HG]|PP}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}M[YR]YS{I|L} 7.5523;5.0289;4.4722;4.2123;3.7288;3.0837;3.0162;2.5718;2.439;2.3459 +;+;-;-;-;-;-;-;-;- + 2569 + NaN NaN 533502.1 NaN 11979 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15377 67.108 NaN 1268700 35 0 98763 0.261 + 35982 YYVWLQHTL 9 99 611.8163516349704 1221.6181503367407 2 611.816650390625 MULTI HCD FTMS 0 0 0 15375 488722.25 0.9412871315673327 1 -0.03310394287109375 2 Unmodified _YYVWLQHTL_ ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR 114.6490535036381 0.0021834323520089267 2 YYV[W{I|L}]QHT{I|L} 9 0 + 90.04 0 0 7.3705 7.3705 93.202 0 0 0 15.249701094959903 15.249701094959903 15.249701094959903 15.515384402724592 0 2.6237125054200234 2 1.4361818737241734 0.6307196863200843 + + YYV[W{I|L}]QHT{I|L};YYV[W{I|L}][AG]HT{I|L};YYW[{I|L}V]QHT{I|L};YY[KA]{I|L}R{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM};YY{I|L}{[RE]|[WV]}QHT{I|L};YY{I|L}{[RE]|[WV]}[AG]HT{I|L};YYW[{I|L}V][AG]HT{I|L};YY[R{M(Oxidation (M))|F}]{I|L}{[QG]|[NA]}Y{I|L};{[RE]|[WV]}Y[Y{I|L}]QHT{I|L};{[RE]|[WV]}Y[Y{I|L}][AG]HT{I|L} 7.3705;6.1005;5.0211;4.9058;4.8295;4.0757;4.031;3.1093;2.5841;1.8303 +;-;-;-;-;-;-;-;-;- + 1961 + NaN NaN 308309.6 NaN 11980 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15378 67.112 NaN 671130 35 0 62643 0.261 + 29192 TYKDYVDLF 9 87 582.2846911155348 1162.5548292978694 2 582.2848510742188 MULTI HCD FTMS 0 0 0 15375 292078.96875 0.5670012246317505 1 -0.03310394287109375 3 Unmodified _TYKDYVDLF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 70.33199760932243 0.0089807860198535 2 [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F} 9 0 + 75.997 0 0 6.537 6.537 90.66 0 0 0 21.12704280191288 50.64449097667705 21.12704280191288 11.020599913279625 0 1.9916440611282624 1.6989700043360187 0.25 0.6747425010840047 + + [YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{I|L}{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}VD{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YV]DK[YT]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YV]D[YT]K{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}K[YT]{M(Oxidation (M))|F};[YT]K{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P][YT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}[YT]K{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YV]DK{M(Oxidation (M))|F}[YT];{NN|[MP]|[D{I|L}]|[EV]}[YV]D{M(Oxidation (M))|F}K[YT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}K{M(Oxidation (M))|F}[YT] 6.537;5.5891;2.6942;2.395;2.1763;1.907;1.8772;1.6628;1.3206;1.145 +;-;-;-;-;-;-;-;-;- + 735 NaN NaN 200236.2 NaN 11981 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15379 67.115 NaN 290350 35 0 52623 0.261 + 7105 FRNHDLDI 8 64 515.2619174150332 NaN 0 515.2769165039062 PEAK HCD FTMS 0 0 0 15375 49780.0625 0.7333273103612575 -6 0.171234130859375 4 Unmodified _FRNHDLDI_ REV__ENSG00000113810|ENST00000357388|SMC4;REV__ENST00000468653.5_1_3:160117521-160130242:+|nuORF;REV__nc|ENSG00000113810|Q9NTJ3-2|SMC4;REV__SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant;REV__SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant 4.75600775471527 0.38822285293237185 2 VE 2 -1 15.217 0 0 1.4795 0 0 131.06561327492471 666.3094576471311 797.3750709220558 0 0 0 0 0 0 0 0.4247425010840047 0 VE 1.4795 - 21 + NaN NaN 146777.2 NaN 11982 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15380 67.118 NaN 759730 35 0 45905 0.261 + 24944 RYSVFFQSL 9 101 573.798279888378 1145.582006843556 2 573.7987670898438 MULTI HCD FTMS 0 0 0 15375 313252 0.0865651712058859 12 -0.34874725341796875 5 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 69.33821966488729 0.009302356455414924 2 [Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}QS{I|L} 9 3 + 65.913 0 0 5.7537 5.7537 88.17 0 0 0 5.267500148791001 11.338031200885155 5.267500148791001 9.208187539523749 0 1.7302046884880937 1.0969100130080565 0.3807196863200844 0.2742275032520141 [Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[AG]S{I|L};{[TV]|[{I|L}S]}Q[WE]RQS{I|L};[Y{I|L}][QT]{M(Oxidation (M))|F}PHQ{I|L};{[TV]|[{I|L}S]}E[WQ]RQS{I|L};{[TV]|[{I|L}S]}[HV]G{M(Oxidation (M))|F}{[WT]|[RM]}S{I|L};{[TV]|[{I|L}S]}Q[WE]R[AG]S{I|L};[Y{I|L}]K[{M(Oxidation (M))|F}T][RD]G{M(Oxidation (M))|F};[Y{I|L}][QT]{M(Oxidation (M))|F}PH[AG]{I|L};{[TV]|[{I|L}S]}[AG][WE]RQS{I|L} 5.7537;4.9499;4.364;4.1354;3.8145;3.7919;3.5602;3.3503;3.3316;3.2551 -;-;-;-;-;-;-;-;-;- 3443 NaN NaN 211384.1 NaN 11983 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15381 67.122 NaN 737670 35 0 62385 0.261 + 13279 KYMDINFDF 9 78 596.770743768414 1191.526934603628 2 596.7710571289062 MULTI HCD FTMS 0 0 0 15375 382649.90625 0.13557244562441728 -6 0.171234130859375 6 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 90.13494162714682 0.004522430935000059 2 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 81.78 0 0 6.8635 6.8635 87.039 0 0 0 3.2568864632742844 61.08349385648225 3.2568864632742844 3.8071968632008435 0 2.6861818737241734 0 0.6109243748081782 0.6747425010840047 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[AG]VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.8635;6.5439;6.514;6.0907;5.7711;5.7412;5.7412;5.7309;5.155;4.9581 -;-;-;-;-;-;-;-;-;- 1148 NaN NaN 195423.7 NaN 11984 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15382 67.125 NaN 182820 35 0 10254 0.261 + 25273 SAVEWEETL 9 76 532.2502957403524 1062.4860385475047 2 532.2509765625 MULTI HCD FTMS 0 0 0 15375 39721.1484375 0.4022170122459932 1 -0.03310394287109375 7 Unmodified _SAVEWEETL_ ENSG00000215712|ENST00000400788|TMEM242 24.020572477871973 0.15282392193088168 2 VVNKS{[SA]|[TG]}N{I|L} 9 7 31.366 0 0 2.9521 0 0 131.98877822816797 0 131.98877822816797 0 16.07509072285026 0 0 0 1.1237125054200234 0 0 0.3807196863200844 VVNKS{[SA]|[TG]}N{I|L} 2.9521 - 289 + NaN NaN 118725.7 NaN 11985 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15383 67.128 NaN 299720 35 0 22155 0.261 -1 LTIVSMACVGF 11 62 578.7919771333146 1155.5694013334291 2 578.7931518554688 MULTI HCD FTMS 0 0 0 15375 32860.05078125 0.3653958086505114 1 -0.03310394287109375 8 Oxidation (M) _LTIVSM(Oxidation (M))ACVGF_ KIR3DL2|p.V5I|1|0.19|ENSG00000240403|chr19:54850488-54850488|G/A|missense_variant 22.736283301280096 0.2589804299186601 2 [Y{I|L}][RD]{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F} 10 -1 + 55.071 0 0 4.7657 4.7657 87.568 0 0 0 44.61303739409743 11.737796609374058 11.737796609374058 10.013487579716767 0 2.4247425010840047 1.3979400086720375 0.3252574989159953 0 [Y{I|L}][RD]{I|L}A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F};[Y{I|L}][RD]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}G{M(Oxidation (M))|F} 4.7657;3.8991 -;- 66 + NaN NaN 132753.3 NaN 11986 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15384 67.132 NaN 244910 35 0 30010 0.261 + 19253 NLEDDEYL 8 66 505.71896082681354 1009.4233687204271 2 505.71942138671875 MULTI HCD FTMS 0 0 0 15375 24852.765625 0.39256223741498497 1 -0.03310394287109375 9 Unmodified _NLEDDEYL_ tr|U7SGG1|U7SGG1_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxin(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02208PE=4SV=1;tr|U7T3F2|U7T3F2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00619PE=4SV=1 7.289230182591677 0.5311777711368266 2 YE{I|L} 3 6 31.198 0 0 3.0907 0 0 586.2236762512551 0 586.2236762512551 0 16.593793813122062 0 0 0 0.5 0 0 0 YE{I|L} 3.0907 - 48 NaN NaN 139626.8 NaN 11987 3395 15375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15386 67.137 NaN 932570 35 0 51972 0.327 + 27212 SYNNFFRMF 9 97 621.2737767427004 1240.5330005522007 2 621.2740478515625 MULTI HCD FTMS 0 0 0 15385 823834.3125 0.14919803285208197 32 -0.8983078002929688 1 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 157.7952019732125 5.857147217999733E-07 2 [YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 92.396 0 0 7.4481 7.4481 86.59 0 0 0 0.22878745280337398 10.422196612541228 0.22878745280337398 0.22878745280337398 0 2.5 1 0.9163865622122673 1.872363747448347 [YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}RP[MT];[YN]SGG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}RP[MT];{[{M(Oxidation (M))|F}C]|[YS]}NN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}RP[MT];{[{M(Oxidation (M))|F}C]|[YS]}NGG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}RP[MT] 7.4481;7.4297;6.7058;6.6874;6.4766;5.0886;4.0962;3.3574;3.3323;2.5935 -;+;-;-;-;-;-;-;-;- + 2986 NaN NaN 234598.2 NaN 11988 3396 15385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15387 67.141 NaN 852820 35 0 123660 0.261 + 29264 TYLPAPEGLKF 11 77 618.3370247329226 1234.659496532645 2 618.3372192382812 MULTI HCD FTMS 0 0 0 15385 403820.03125 0.6897777400565391 2 -0.05286407470703125 2 Unmodified _TYLPAPEGLKF_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 35.61225514009592 0.16520851886613083 2 [YT]{I|L}[PA]T{I|L}VV 9 5 46.565 0 0 3.7715 0 0 0 274.08347498111567 274.08347498111567 25.366837651091387 0 0 0 0 1.274227503252014 1.6989700043360187 0 0 [YT]{I|L}[PA]T{I|L}VV 3.7715 - 169 + NaN NaN 232502.9 NaN 11989 3396 15385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15388 67.145 NaN 358110 35 0 60280 0.261 + 10117 IFIQNSKLYF 10 61 636.8527037116027 1271.6908544900052 2 636.853271484375 MULTI HCD FTMS 0 0 0 15385 99125.859375 0.5308231184516834 2 -0.05286407470703125 3 Unmodified _IFIQNSKLYF_ ENSG00000138459|ENST00000492406|SLC35A5 43.981846655682396 0.11085276043338313 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QN[KS]{I|L}Y{M(Oxidation (M))|F} 10 0 + 44.016 0 0 3.4612 3.4612 84.261 0 0 0 7.269987279362624 38.5313202099066 7.269987279362624 9.164539485499247 0 1.805462187404089 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QN[KS]{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QGG[KS]{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]N[KS]{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NG]A[KS]{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QN[KS]Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}QN[KS]{I|L}Y{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QGG[KS]Y{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]N[KS]Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}[AG]N[KS]{I|L}Y{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}QGG[KS]{I|L}Y{M(Oxidation (M))|F} 3.4612;2.7406;2.7406;2.6166;2.5184;2.4517;1.7977;1.7977;1.731;1.731 +;-;-;-;-;-;-;-;-;- + 435 NaN NaN 155713 NaN 11990 3396 15385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15389 67.148 NaN 66546 35 0 4938.6 0.264 -1 0 38 418.2972653903013 834.5799778474026 2 418.29736328125 MULTI HCD FTMS 0 0 0 15385 49956.51171875 0.7333456160970033 -5 0.14214324951171875 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.5294 0 0 669.5016830249401 0 669.5016830249401 0 12.764209843288903 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5294 - 1 + NaN NaN 95390.8 NaN 11991 3396 15385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15390 67.152 NaN 86988 35 0 4718.1 0.261 + 21806 QALLDLHAL 9 46 497.2898317875853 992.5651106419706 2 497.2899475097656 MULTI HCD FTMS 0 0 0 15385 30410.353515625 0.2052467775278567 8 -0.2260284423828125 5 Unmodified _QALLDLHAL_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 {I|L}D 2 7 7.9588 0 0 0.80184 0 0 312.1788324210706 449.2523287408813 761.4311611619519 0 0 0 0 0 0 0 0 0 + {I|L}D 0.80184 + + 5 + NaN NaN 106205.4 NaN 11992 3396 15385 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15392 67.156 NaN 1510500 35 0 126020 0.326 + 13242 KYMDIEFDF 9 104 612.2680622783852 1222.5215716235703 2 612.2685546875 MULTI HCD FTMS 0 0 0 15391 480960.90625 0.1574200089566501 -5 0.12895965576171875 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 93.16586880292088 0.00444300900000894 2 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F} 9 5 + 86.365 0 0 7.0645 7.0645 88.903 0 0 0 13.961280356782382 3.947340481202062 3.947340481202062 7.658467447160987 0 1.7059771852360797 1.6989700043360187 1.3441876774005248 0 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};YYT[VG]{I|L}[MD]D{M(Oxidation (M))|F};YYV{[SA]|[TG]}{I|L}[MD]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D[YE]K;YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}P][DP]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYT[VG]{I|L}{[{M(Oxidation (M))|F}C]|[YS]}EE 7.0645;6.4381;5.9225;4.5908;4.5069;3.5856;2.9097;2.8327;2.0127;1.8141 -;-;+;-;-;-;-;-;-;- + 2537 NaN NaN 318686.9 NaN 11993 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15393 67.161 NaN 945470 35 0 168510 0.261 + 3787 EPEDHYFLL 9 89 581.7737577473541 1161.5329625615082 2 581.7747192382812 MULTI HCD FTMS 0 0 0 15391 253550.28125 0.1952050338668425 -5 0.12895965576171875 2 Unmodified _EPEDHYFLL_ ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF 36.04419817259434 0.08350412372117409 2 [YT]KDYVDQ 8 7 30.264 0 0 2.6055 0 0 0 146.08145456305218 146.08145456305218 6.68034422821102 0 0 0 0 0 1.6989700043360187 0 0.2742275032520141 [YT]KDYVDQ 2.6055 - 785 NaN NaN 236094.4 NaN 11994 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15394 67.165 NaN 462990 35 0 57777 0.261 + 5206 FFDAELSQM 9 74 552.2391290246032 1102.4637051160064 2 552.2390747070312 MULTI HCD FTMS 0 0 0 15391 142409.46875 0.039555933273244165 81 -2.186553955078125 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 110.5527297667825 0.0028521687250969148 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 87.457 0 0 7.9329 7.9329 88.178 0 0 0 1.8831846752618162 1.8831846752618162 1.8831846752618162 1.8831846752618162 0 3.055462187404089 0 1.4049471895720984 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};MYDAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F};MYDAE{I|L}S[AG]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[QA][Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{[{M(Oxidation (M))|F}C]|[YS]}[KP];{[QS]|[NT]}PY{M(Oxidation (M))|F}AD[Y{I|L}];MYDA{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D{[NV]|[RG]}AD[Y{I|L}];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAAAAD[Y{I|L}] 7.9329;7.7621;7.0977;6.9269;2.244;2.082;1.9646;1.9043;0.85512;0.66951 +;-;-;-;-;-;-;-;-;- + 882 NaN NaN 170288.8 NaN 11995 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15395 67.168 NaN 511780 35 0 93871 0.262 + 24479 RYLDVSILGKF 11 69 437.5866945028399 1309.7382541087197 3 437.58697509765625 MULTI HCD FTMS 0 0 0 15391 90177.984375 0.5513519291902296 -2 0.05289459228515625 4 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 41.566510922350716 0.12686123777427089 2 VS{I|L}{I|L}[KG]{M(Oxidation (M))|F} 7 4 66.458 0 0 5.0742 0 0 547.2758656232437 0 547.2758656232437 0 51.24175720442146 0 0 0 2.4247425010840047 0 1.3494850021680094 0 + VS{I|L}{I|L}[KG]{M(Oxidation (M))|F} 5.0742 + + 101 NaN NaN 161588.7 NaN 11996 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15396 67.171 NaN 195710 35 0 15573 0.261 -1 IPMDDDFQL 9 54 555.2442608346278 1108.4739687360554 2 555.24560546875 MULTI HCD FTMS 0 0 0 15391 32371.314453125 0.40355581036054666 1 -0.03307342529296875 5 Oxidation (M) _IPM(Oxidation (M))DDDFQL_ ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F}Q{I|L} 3 -1 34.253 0 0 3.0901 0 0 702.2521061733368 0 702.2521061733368 0 30.757659435244733 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}Q{I|L} 3.0901 + + 58 NaN NaN 137061.4 NaN 11997 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15397 67.175 NaN 182850 35 0 22825 0.261 + 32915 YAELSTSALSQ 11 52 585.2879475474001 NaN 0 585.287109375 PEAK HCD FTMS 0 0 0 15391 31347.3515625 0.4057650649518624 2 -0.054473876953125 6 Unmodified _YAELSTSALSQ_ VSTM1|p.E216Q|1|0.15|ENSG00000189068|chr19:54041026-54041026|C/G|missense_variant 8.745405648335112 0.31731194618894887 2 {I|L}NA 3 9 13.188 0 0 1.1285 0 0 129.06132787173766 738.3129976861936 867.3743255579313 0 0 0 0 0 0 0 0 0 {I|L}NA 1.1285 - 63 + NaN NaN 124684.8 NaN 11998 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15398 67.178 NaN 165340 35 0 35816 0.264 + 7663 FYIWRPLRI 9 43 421.91659722801535 1262.7279622842461 3 421.9169006347656 MULTI HCD FTMS 0 0 0 15391 29795.43359375 0.12081556861522187 10 -0.2958526611328125 7 Unmodified _FYIWRPLRI_ ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant 7.608950283845883 0.29333554423920943 2 YE 2 8 25.217 0 0 1.997 0 0 952.5960087217466 0 952.5960087217466 0 8.226825097560422 0 0 0 0.4247425010840047 0 0 0 YE 1.997 - 5 NaN NaN 129575.1 NaN 11999 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15399 67.181 NaN 146000 35 0 7280.6 0.261 -1 HYIFLKMCF 9 62 629.8091483714101 NaN 0 629.8093872070312 PEAK HCD FTMS 0 0 0 15391 31439.705078125 0.5008489503694 -5 0.12895965576171875 8 Carbamidomethyl (C) _HYIFLKMC(Carbamidomethyl (C))F_ ENST00000370812.7_2_1:77557956-77558046:-|nuORF 2.0597508629832335 0.2852655770354268 2 HYV 3 -1 15.203 0 0 1.2089 0 0 131.06764247853272 724.3243502252561 855.3919927037889 0 0 0 0 0 0.25 0 0 0 HYV 1.2089 - 23 + NaN NaN 122408.9 NaN 12000 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15400 67.185 NaN 83322 35 0 6064 0.264 + -1 MGMFVVEC 8 47 486.7035871561437 NaN 0 486.70361328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _MGMFVVEC(Carbamidomethyl (C))_ REV__ENSG00000100330|ENST00000401950|MTMR3;REV__ENSG00000108389|ENST00000682306|MTMR4;REV__MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant;REV__nc|ENSG00000100330|Q13615-2|MTMR3;REV__nc|ENSG00000100330|Q13615-3|MTMR3;REV__nc|ENSG00000108389|Q9NYA4|MTMR4 2.577480529830294 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.71955 0 0 210.9742997011562 686.3525484674436 897.3268481685998 0 0 0 0 0 0 0 0 0 A 0.71955 - 2 + NaN NaN 100602.9 NaN 12001 3397 15391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15402 67.189 NaN 776120 35 0 148500 0.327 -1 TAMDVVYAL 9 59 499.74673630115075 997.4789196691015 2 499.74700927734375 MULTI HCD FTMS 0 0 0 15401 303802.96875 0.37224432154525217 15 -0.42938995361328125 1 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 36.04419817259434 0.08350412372117409 2 VYA{I|L} 4 -1 37.652 0 0 3.7747 0 0 533.2152668705603 0 533.2152668705603 0 14.744237387763093 0 0 0 1.3494850021680094 0 0 0 VYA{I|L} 3.7747 + + 244 NaN NaN 193583.8 NaN 12002 3398 15401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15403 67.199 NaN 175590 35 0 25060 0.287 -1 FPAGYMYPSM 10 40 590.2460169250976 1178.477480916995 2 590.2467651367188 MULTI HCD FTMS 0 0 0 15401 117668.046875 0.591042684700373 29 -0.8292770385742188 2 Oxidation (M) _FPAGYM(Oxidation (M))YPSM_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 25.399314129420986 0.2735354021946395 2 ME{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Y[WE] 8 -1 + 42.95 0 0 3.6446 3.6446 83.568 0 0 0 42.95039703980876 10.510299956639813 10.510299956639813 7.215853585746778 0 1.2059771852360797 0 0.8494850021680094 0 ME{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Y[WE];M{[MS]|[{M(Oxidation (M))|F}A]}[VS]{M(Oxidation (M))|F}Y[WE] 3.6446;3.0323 -;- 140 + NaN NaN 111248 NaN 12003 3398 15401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15404 67.203 NaN 344980 35 0 40689 0.261 + 23615 RPLDVDWTL 9 76 557.798126514421 1113.581700095642 2 557.7821655273438 MULTI HCD FTMS 0 0 0 15401 84348.9453125 0.39810068701692797 -4 0.11583709716796875 3 Unmodified _RPLDVDWTL_ ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39 29.84058131909904 0.11198220037953927 2 RWT{I|L} 4 5 46.102 0 0 4.14 0 0 539.2420510341682 0 539.2420510341682 0 25.132965752203233 0 0 0 1.305462187404089 0 0.3494850021680094 0 RWT{I|L} 4.14 - 263 NaN NaN 152253.2 NaN 12004 3398 15401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15405 67.206 NaN 233830 35 0 31477 0.261 -1 LTIVSMACVGF 11 60 578.7919771333146 1155.5694013334291 2 579.2938232421875 MULTI HCD FTMS 0 0 0 15401 12694.8583984375 0.21836679246611648 3 -0.0769805908203125 4 Oxidation (M) _LTIVSM(Oxidation (M))ACVGF_ KIR3DL2|p.V5I|1|0.19|ENSG00000240403|chr19:54850488-54850488|G/A|missense_variant 22.736283301280096 0.2589804299186601 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}[R{I|L}]A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F} 10 -1 + 48.407 0 0 4.189 4.189 86.835 0 0 0 8.440899702813034 19.07522178732052 8.440899702813034 10.339322000954276 0 1.305462187404089 1.6989700043360187 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}[R{I|L}]A{[DS]|[MA]|[CV]|TT}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[R{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}G{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[R{I|L}]A{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{M(Oxidation (M))|F}A[R{I|L}][EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV]{I|L}{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV]{I|L}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[R{I|L}][YG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV]{I|L}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[YV][KP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}T]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.189;3.2943;2.67;2.0454;1.7125;1.5601;1.0866;0.76326;0.35037;0.19799 -;-;-;-;-;-;-;-;-;- 85 NaN NaN 145496.1 NaN 12005 3398 15401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15407 67.211 NaN 1217100 35 0 192460 0.327 + 14000 KYSPFVVSF 9 87 537.2869228892054 1072.5592928452106 2 537.2872314453125 MULTI HCD FTMS 0 0 0 15406 648283.125 0.17425559267696203 11 -0.318878173828125 1 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 118.0683919894846 0.0016252157255221692 2 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 71.478 0 0 6.6643 6.6643 91.103 0 0 0 4.227502686661865 4.227502686661865 4.227502686661865 11.975518560352114 0 2.6549471895720984 0 1.2343545039429593 0.2742275032520141 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]N[YV]VVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYPKS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]GG[YV]VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SVYPKS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}VYPKS{M(Oxidation (M))|F};[YK][{I|L}P][YG]VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVYV{[NV]|[RG]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SVYV{[NV]|[RG]}{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}VYV{[NV]|[RG]}{M(Oxidation (M))|F} 6.6643;5.5477;4.7679;4.6892;4.5413;4.3969;3.5886;3.2874;3.0608;2.9164 +;-;-;-;-;-;-;-;-;- + 584 NaN NaN 271168.6 NaN 12006 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15408 67.215 NaN 878040 35 0 93619 0.261 + 12761 KYDEIFYNL 9 84 602.7977562185981 1203.5809595039962 2 602.7979736328125 MULTI HCD FTMS 0 0 0 15406 465343.96875 0.058195959252170665 21 -0.614471435546875 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 59.368380827593164 0.01846506874148156 2 [YV]EKE{M(Oxidation (M))|F}YN{I|L} 9 4 + 74.42 0 0 6.1832 6.1832 84.761 0 0 0 3.7624226499362123 16.478174818886366 3.7624226499362123 1.249387366082999 0 1.8494850021680094 1.154901959985743 0.4247425010840047 0.3807196863200844 [YV]EKE{M(Oxidation (M))|F}YN{I|L};[YV]EEK{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}KYE{M(Oxidation (M))|F}YN{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YEK{M(Oxidation (M))|F}YN{I|L};[YV]E{M(Oxidation (M))|F}KEYN{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EK{M(Oxidation (M))|F}EYN{I|L} 6.1832;6.0794;6.0271;5.8706;5.8427;5.7243;5.6205;5.5732;5.5682;5.4269 -;-;-;-;-;-;-;-;-;- 4156 NaN NaN 227131.2 NaN 12007 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15409 67.219 NaN 530530 35 0 136380 0.261 + 30405 VLPARYFYI 9 59 571.3235361775751 1140.63251942195 2 571.3239135742188 MULTI HCD FTMS 0 0 0 15406 227791.765625 0.9004704861537899 1 -0.03565216064453125 3 Unmodified _VLPARYFYI_ ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103443606-103451020:-|nuORF 26.88365393820708 0.12808753336095696 2 Y{I|L} 2 7 25.969 0 0 2.2767 0 0 846.47617393069 0 846.47617393069 0 13.249168106772728 0 0 0 0.5 0 0 0 + Y{I|L} 2.2767 + + 64 NaN NaN 165514.5 NaN 12008 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15410 67.222 NaN 515620 35 0 41767 0.221 + 2923 DYSPYFKTI 9 80 567.2792195549672 1132.5438861767343 2 567.2793579101562 MULTI HCD FTMS 0 0 0 15406 354050.0625 0.016838975217389442 161 -4.238426208496094 4 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 67.83816525789305 0.009787749748478139 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 41.254 0 0 3.6426 0 0 0 764.399172632235 764.399172632235 5.31234684152075 0 0 0 0 1 2 0.3807196863200844 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.6426 + + 134 NaN NaN 147330.3 NaN 12009 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15411 67.225 NaN 875150 35 0 108880 0.261 -1 IYNPSMGVSVL 11 91 598.3049756700404 1194.5953984068808 2 598.8190307617188 MULTI HCD FTMS 0 0 0 15406 37537.2421875 0.6576343969460194 3 -0.092071533203125 5 Oxidation (M) _IYNPSM(Oxidation (M))GVSVL_ ENSG00000110400|ENST00000264025|NECTIN1;ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-2|NECTIN1;nc|ENSG00000110400|Q15223-3|NECTIN1 28.233623360808718 0.2127292296419295 2 RSV{I|L} 4 -1 28.153 0 0 2.3567 0 0 721.3110804116807 0 721.3110804116807 0 -1.7554024777372348 -1.7554024777372348 0 0 0.7887254899964358 0 0.6109243748081782 0 RSV{I|L} 2.3567 - 2070 NaN NaN 223022.5 NaN 12010 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15412 67.228 NaN 545140 35 0 47267 0.261 + 29253 TYLNYVVHL 9 89 561.3022621053185 1120.589971277437 2 561.2888793945312 MULTI HCD FTMS 0 0 0 15406 39473.78125 0.24522645902793982 5 -0.151763916015625 6 Unmodified _TYLNYVVHL_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 48.345845343767074 0.03388484103555672 2 [YT]{I|L}NYVV[H{I|L}] 9 0 + 49.632 0 0 4.4291 4.4291 86.139 0 0 0 11.078409410397462 1.0822685886482475 1.0822685886482475 9.208187539523749 0 1.1549471895720984 1.6989700043360187 0 0 + + [YT]{I|L}NYVV[H{I|L}];[YT]{I|L}GGYVV[H{I|L}] 4.4291;3.6073 +;- + 537 + NaN NaN 178500.8 NaN 12011 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15413 67.232 NaN 959840 35 0 399260 0.261 + 10784 ISPGRYFLL 9 63 533.3081646102079 1064.6017762872157 2 533.308349609375 MULTI HCD FTMS 0 0 0 15406 214266.546875 0.1738819437850831 -3 0.0742645263671875 7 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 31.26834338654808 0.10542797264966089 2 {I|L}SP 3 6 48.672 0 0 4.5719 0 0 0 764.4094942682249 764.4094942682249 25.159940911636767 0 0 0 0 0.5 1.6989700043360187 0.5 0 + {I|L}SP 4.5719 + + 62 + NaN NaN 244315.4 NaN 12012 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15414 67.235 NaN 396150 35 0 51459 0.261 + 3607 EKLTHSWTL 9 80 557.798126514421 1113.581700095642 2 557.798828125 MULTI HCD FTMS 0 0 0 15406 113903.1015625 0.5375870773178516 -3 0.0742645263671875 8 Unmodified _EKLTHSWTL_ REV__ENSG00000253251|ENST00000510585|SHLD3 16.149105407346934 0.22083165093524068 2 DWT{I|L} 4 -1 43.488 0 0 3.9052 0 0 580.3337269513687 0 580.3337269513687 0 12.341284356197235 0 0 0 0.9247425010840047 0 0.3807196863200844 0 DWT{I|L} 3.9052 - 322 NaN NaN 157767.3 NaN 12013 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15415 67.238 NaN 193950 35 0 36465 0.262 + 18540 MTRMLNMLIVF 11 47 456.9132741033292 NaN 0 456.9136047363281 PEAK HCD FTMS 0 0 0 15406 19082.3515625 0.3069319335042657 6 -0.17828369140625 9 Unmodified _MTRMLNMLIVF_ ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF 1.4551175022131473 0.3379923941668102 2 H 1 11 3.9794 0 0 0.43643 0 0 570.662930187324 201.06679712467033 771.7297273119943 0 0 0 0 0 0 0 0 0 H 0.43643 - 6 + NaN NaN 125268.4 NaN 12014 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15416 67.242 NaN 107100 35 0 14925 0.261 -1 0 44 453.34365256871973 NaN 0 453.34344482421875 PEAK HCD FTMS 0 0 0 15406 8733.0556640625 0.21691182570228779 5 -0.151763916015625 10 NaN NaN 2 S 1 -1 1.2591 0 0 0.13917 0 0 509.5232903895895 305.1007174127563 814.6240078023458 0 0 0 0 0 0 0 0 0 S 0.13917 - 1 + NaN NaN 105928.8 NaN 12015 3399 15406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15418 67.247 NaN 661190 35 0 34454 0.327 + 24945 RYSVFFQSL 9 95 573.798279888378 1145.582006843556 2 573.7971801757812 MULTI HCD FTMS 0 0 0 15417 165135.296875 0.04563407494962257 17 -0.48690032958984375 1 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 57.107585691075435 0.021627766313179933 2 SQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[PS]G{M(Oxidation (M))|F} 9 7 69.746 0 0 6.0883 0 0 131.08981717566354 0 131.08981717566354 0 43.48689918391166 0 0 0 2.7856668758921828 0 0.3807196863200844 0 SQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[PS]G{M(Oxidation (M))|F} 6.0883 - 3233 + NaN NaN 206108.7 NaN 12016 3400 15417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15419 67.251 NaN 468680 35 0 45749 0.261 + 7162 FSHENQLVSAG 11 80 594.7844176462197 1187.5542823592393 2 595.2880859375 MULTI HCD FTMS 0 0 0 15417 74256.4921875 0.28344726794023484 12 -0.33940887451171875 2 Unmodified _FSHENQLVSAG_ REV__ENSG00000197177|ENST00000392607|ADGRA1;REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1;REV__nc|ENSG00000197177|Q86SQ6-2|ADGRA1 19.361941925380144 0.2883811769592959 2 [YV][WQ]W{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 -1 + 41.092 0 0 3.4603 3.4603 60.441 0 0 0 0 7.928418131619985 0 0 0 0 2 0 0 [YV][WQ]W{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};YY[H{I|L}]W{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]A{[QD]|[EN]|[WG]|[KD]|[RS]}W{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV][WQ]WMY{I|L};YY[H{I|L}]WMY{I|L};[YV]A{[QD]|[EN]|[WG]|[KD]|[RS]}WMY{I|L};YYV[YQ][{I|L}P]NE;[YV]Y[YQ][{I|L}P]NE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WR]W{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[QD]|[EN]|[WG]|[KD]|[RS]}W{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.4603;3.4603;3.3505;3.2734;3.2734;3.1637;2.7926;2.7926;2.7665;2.6567 -;-;-;-;-;-;-;-;-;- 614 NaN NaN 161161.4 NaN 12017 3400 15417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15420 67.255 NaN 216160 35 0 18185 0.261 + 20009 NYIGISLRI 9 48 524.8110609641684 1047.6075689951367 2 524.8115234375 MULTI HCD FTMS 0 0 0 15417 113849.5625 0.1780617605718956 -2 0.0570526123046875 3 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 35.61225514009592 0.08548698421724198 2 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 60.881 0 0 5.8114 5.8114 93.119 0 0 0 5.55462187404089 5.55462187404089 5.55462187404089 60.88099678598198 0 2.1549471895720984 1.6989700043360187 0 0 + + [YN]{I|L}G{I|L}S{I|L}R{I|L} 5.8114 + + 95 + NaN NaN 131617.2 NaN 12018 3400 15417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15421 67.258 NaN 153360 35 0 6725.2 0.261 + 32804 WTDLALQYLH 10 52 630.3237087597054 NaN 0 630.310302734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _WTDLALQYLH_ ENSG00000129055|ENST00000354910|ANAPC13 3.944395688203298 0.33680843299986807 2 HY 2 9 9.464 0 0 0.75192 0 0 132.0996590035898 823.3911226861936 955.4907816897835 0 0 0 0 0 0 0 0 0 HY 0.75192 - 26 + NaN NaN 116750.4 NaN 12019 3400 15417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15422 67.262 NaN 123770 35 0 13726 0.264 -1 ACGNDDCR 8 46 455.66010903520976 909.3056651372195 2 455.6601867675781 MULTI HCD FTMS 0 0 0 15417 23445.55078125 0.3561644363989471 -3 0.09012603759765625 5 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GNDDCR_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 1.844237919475145 0.5392561982033289 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.4841 0 0 744.2263021995227 0 744.2263021995227 0 2.80848766326997 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4841 - 5 + NaN NaN 117232.5 NaN 12020 3400 15417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15424 67.266 NaN 3248600 35 0 329240 0.326 + 13343 KYMDVQFDF 9 112 596.770743768414 1191.526934603628 2 596.7711791992188 MULTI HCD FTMS 0 0 0 15423 2822475.5 1 0 0 1 Unmodified _KYMDVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 136.39213081522345 0.00021731600835925866 2 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 102.99 0 0 8.6432 8.6432 90.615 0 0 0 5.565658918089653 57.44386806657971 5.565658918089653 5.625145978905053 0 2.274227503252014 0 1.6237125054200234 1.4163865622122673 + + [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}KVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.6432;8.1711;8.1286;7.8704;7.6673;7.3983;7.3558;6.9902;6.9739;6.9727 +;-;-;-;-;-;-;-;-;- + 10910 NaN NaN 598060.4 NaN 12021 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15425 67.271 NaN 1312900 35 0 208630 0.261 + 27126 SYMGHFDLL 9 91 541.7523669874173 1081.4901810416345 2 541.7527465820312 MULTI HCD FTMS 0 0 0 15423 1209527 0.28582876320791256 7 -0.2091064453125 2 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 92.4914307365334 0.004460681868130716 2 SYMGH 5 4 55.93 0 0 5.1716 0 0 0 503.25143283993816 503.25143283993816 10.123249155897227 0 0 0 0 1.274227503252014 2 0 0 + SYMGH 5.1716 + + 1133 + NaN NaN 288919.1 NaN 12022 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15426 67.275 NaN 1176700 35 0 64867 0.261 + 27213 SYNNFFRMF 9 109 621.2737767427004 1240.5330005522007 2 621.2741088867188 MULTI HCD FTMS 0 0 0 15423 646206.875 0.11702935056554982 37 -1.0402984619140625 3 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 152.88595553498965 5.775426743015152E-06 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 104.12 0 0 8.3933 8.3933 92.625 0 0 0 83.15196113653683 10.642492736872597 10.642492736872597 9.208187539523749 0 2.693672679568534 2 0 0.6549471895720985 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[CP]|[EA]}[H{I|L}];{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.3933;7.651;7.651;7.2998;6.9122;6.5759;6.5575;6.3478;6.3112;5.8336 +;-;-;+;-;-;-;-;-;- + 2514 + NaN NaN 286180.2 NaN 12023 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15427 67.278 NaN 609710 35 0 172070 0.263 + 15537 LPDPQNISL 9 55 498.77166199513505 995.5287710570701 2 498.7718505859375 MULTI HCD FTMS 0 0 0 15423 452385.46875 0.6089701037766042 -1 0.019927978515625 4 Unmodified _LPDPQNISL_ ENSG00000198860|ENST00000645668|TSEN15;ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF 38.61474834105838 0.07170385841135779 2 N{I|L}S{I|L} 4 5 55.433 0 0 5.5682 0 0 550.2747995696367 0 550.2747995696367 0 51.453650195120844 0 0 0 1.5 0 0.4247425010840047 0.4247425010840047 + N{I|L}S{I|L} 5.5682 + + 108 NaN NaN 184763.7 NaN 12024 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15428 67.281 NaN 372470 35 0 33250 0.261 + 8372 GYLRSVFAL 9 63 513.2916638493975 1024.568774765595 2 513.2922973632812 MULTI HCD FTMS 0 0 0 15423 220749.8125 0.8304664347377915 -1 0.019927978515625 5 Unmodified _GYLRSVFAL_ ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF 39.94969957227396 0.06557568441294001 2 [YG]{I|L}{I|L}[QT]{M(Oxidation (M))|F}A 8 4 40.672 0 0 3.9697 0 0 0 128.0729170063968 128.0729170063968 16.146840095548427 0 0 0 0 1.7614393726401687 1.3979400086720375 0.3494850021680094 0 [YG]{I|L}{I|L}[QT]{M(Oxidation (M))|F}A 3.9697 - 277 NaN NaN 158024.7 NaN 12025 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15429 67.285 NaN 406730 35 0 58398 0.261 + 17245 LYPEVFEKF 9 70 586.304951149322 1170.595349365444 2 586.3058471679688 MULTI HCD FTMS 0 0 0 15423 136587.453125 0.4931729463832768 -1 0.019927978515625 6 Unmodified _LYPEVFEKF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2 34.40172386719151 0.0910440009062557 2 [Y{I|L}][RH]P[NP]K{M(Oxidation (M))|F} 9 5 + 54.089 0 0 4.6207 4.6207 83.969 0 0 0 5.496812376923046 5.496812376923046 5.496812376923046 5.496812376923046 0 1.0994850021680094 2 0 0.7742275032520141 [Y{I|L}][RH]P[NP]K{M(Oxidation (M))|F};[Y{I|L}]{NN|[MP]|[D{I|L}]|[EV]}PE{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}][QT]{[QD]|[EN]|[WG]|[KD]|[RS]}EK{M(Oxidation (M))|F};[Y{I|L}][KT]{[QD]|[EN]|[WG]|[KD]|[RS]}EK{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}EP[NP]K{M(Oxidation (M))|F} 4.6207;4.1511;4.0409;4.0409;2.5253 -;-;-;-;- 483 + NaN NaN 171389.8 NaN 12026 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15430 67.288 NaN 540880 35 0 94279 0.261 + 24806 RYPDTIALTF 10 73 598.8188648316949 1195.6231767301897 2 599.8221435546875 MULTI HCD FTMS 0 0 0 15423 139910.34375 0.7864398687525245 -1 0.019927978515625 7 Unmodified _RYPDTIALTF_ ENSG00000137802|ENST00000457542|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 34.93206674587334 0.18938571726943593 2 A{I|L}T{M(Oxidation (M))|F} 4 6 39.667 0 0 3.3177 0 0 745.3757840073366 0 745.3757840073366 0 3.5353127608303865 0 0 0 1.524227503252014 0 1.4247425010840047 0 + A{I|L}T{M(Oxidation (M))|F} 3.3177 + + 258 + NaN NaN 178037.2 NaN 12027 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15431 67.291 NaN 270800 35 0 18948 0.261 + -1 RQCCVAAEDF 10 60 628.2627493780843 1254.5109458229686 2 628.2628784179688 MULTI HCD FTMS 0 0 0 15423 77213.796875 0.47816590421631594 -14 0.39501190185546875 8 2 Carbamidomethyl (C) _RQC(Carbamidomethyl (C))C(Carbamidomethyl (C))VAAEDF_ REV__ENSG00000160360|ENST00000440944|GPSM1;REV__nc|ENSG00000160360|Q86YR5-3|GPSM1;REV__nc|ENSG00000160360|Q86YR5-4|GPSM1;REV__nc|ENSG00000160360|Q86YR5|GPSM1 13.042465956692817 0.38911719078024076 2 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 49.073 0 0 3.9117 0 0 698.2914906232437 0 698.2914906232437 0 34.4586175090341 0 0 0 1.4247425010840047 0 0.28872548999643577 0 E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.9117 - 223 NaN NaN 138262.7 NaN 12028 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15432 67.295 NaN 188710 35 0 24349 0.264 + 20127 NYIPYLTKLKF 11 59 467.2707544193761 1398.7904338583282 3 467.2702331542969 MULTI HCD FTMS 0 0 0 15423 11766.67578125 0.01139835296550788 23 -0.6837692260742188 9 Unmodified _NYIPYLTKLKF_ ENSG00000205413|ENST00000379958|SAMD9 5.868138319507137 0.39318500527288264 2 [YN]{I|L} 3 8 38.952 0 0 2.7847 0 0 0 1005.5788130788153 1005.5788130788153 17.78151250383644 0 0 0 0 0.8494850021680094 2 0 0 + [YN]{I|L} 2.7847 + + 48 + NaN NaN 121381.9 NaN 12029 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15433 67.298 NaN 165410 35 0 13328 0.261 + -1 TGMEVEVVEAW 11 50 633.2909446935467 NaN 0 633.2900390625 PEAK HCD FTMS 0 0 0 15423 28721.13671875 0.23829225672210608 24 -0.69671630859375 10 Oxidation (M) _TGM(Oxidation (M))EVEVVEAW_ REV__ENSG00000175213|ENST00000311764|ZNF408 2.9952420565917617 0.33362350433860827 2 {I|L} 1 -1 4.6041 0 0 0.36408 0 0 444.1333287408059 704.3270357721311 1148.460364512937 0 0 0 0 0 0 0 0 0 {I|L} 0.36408 - 6 + NaN NaN 115579.9 NaN 12030 3401 15423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15435 67.303 NaN 3817000 35 0 453470 0.327 + 13243 KYMDIEFDF 9 114 612.2680622783852 1222.5215716235703 2 612.2683715820312 MULTI HCD FTMS 0 0 0 15434 3055271.75 1 0 0 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 83.457 0 0 6.8267 6.8267 85.955 0 0 0 0.8807044919201843 43.04667103627246 0.8807044919201843 1.457217079309828 0 2.6861818737241734 0 1.7544321917401078 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}D{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{I|L}[CG]{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}VEE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[MS]|[{M(Oxidation (M))|F}A]}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG][MT]T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}Y{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}C]|[YS]}[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6.8267;6.7075;6.5382;5.9542;5.9006;5.4542;4.8674;4.754;3.1326;2.7043 +;-;-;-;-;-;-;-;-;- + 11909 NaN NaN 682552.1 NaN 12031 3402 15434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15436 67.307 NaN 460320 35 0 52035 0.261 + 29265 TYLPAPEGLKF 11 71 618.3370247329226 1234.659496532645 2 618.3370971679688 MULTI HCD FTMS 0 0 0 15434 170499.640625 0.29123581717013847 8 -0.226806640625 2 Unmodified _TYLPAPEGLKF_ ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-6|TNC 32.037481411007896 0.18823118669267547 2 [YT]{I|L}[PA]T{I|L}VVG 10 6 49.602 0 0 4.0175 0 0 0 217.06165491275627 217.06165491275627 37.91956270212445 0 0 0 0 1.274227503252014 1.6989700043360187 0 0 [YT]{I|L}[PA]T{I|L}VVG 4.0175 - 219 + NaN NaN 161017 NaN 12032 3402 15434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15437 67.311 NaN 507840 35 0 25053 0.261 + 24946 RYSVFFQSL 9 95 573.798279888378 1145.582006843556 2 573.79541015625 MULTI HCD FTMS 0 0 0 15434 119302.0390625 0.03296834956091772 19 -0.5555877685546875 3 Unmodified _RYSVFFQSL_ ENSG00000163636|ENST00000295901|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-2|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 35.61225514009592 0.08548698421724198 2 [Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}QS{I|L} 9 3 + 63.879 0 0 5.5761 5.5761 87.83 0 0 0 6.350293512767919 13.177915127358126 6.350293512767919 9.208187539523749 0 1.1989700043360187 1.3979400086720375 0.3807196863200844 0 [Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}QS{I|L};[Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[AG]S{I|L};{[TV]|[{I|L}S]}Q{M(Oxidation (M))|F}APRQS{I|L};[Y{I|L}]K[YQ][MT]S{I|L};{[TV]|[{I|L}S]}Q[WE]RQS{I|L};{[CT]|[{M(Oxidation (M))|F}G]}A{[TV]|[{I|L}S]}APRQS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]APRQS{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[TV]|[{I|L}S]}APRQS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}G{[TV]|[{I|L}S]}APRQS{I|L};[Y{I|L}]K[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}{[CP]|[EA]}K 5.5761;4.7723;3.4188;3.1521;2.9868;2.9635;2.9305;2.9151;2.7008;2.666 -;-;-;-;-;-;-;-;-;- 2693 NaN NaN 175229.2 NaN 12033 3402 15434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15438 67.315 NaN 70869 35 0 4936.7 0.264 -1 0 47 418.2972653903013 834.5799778474026 2 418.2972106933594 MULTI HCD FTMS 0 0 0 15434 45485.92578125 0.6677188442137288 1 -0.02324676513671875 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.675 0 0 669.501164226112 0 669.501164226112 0 13.979400086720375 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.675 - 3 + NaN NaN 109660.3 NaN 12034 3402 15434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15439 67.318 NaN 56753 35 0 3704.9 0.261 + -1 HTQPCNQWC 9 41 410.8312424520785 1229.4718979564357 3 410.8317565917969 MULTI HCD FTMS 0 0 0 15434 45332.73046875 0.8775947725348002 1 -0.02324676513671875 5 2 Carbamidomethyl (C) _HTQPC(Carbamidomethyl (C))NQWC(Carbamidomethyl (C))_ REV__ENST00000400385.2_1_21:45229571-45229706:-|nuORF 0.9622753412299311 0.3437222896773173 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2594 0 0 1064.393084335145 0 1064.393084335145 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2594 - 5 + NaN NaN 91820.5 NaN 12035 3402 15434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15440 67.321 NaN 83768 35 0 4000.3 0.261 -1 LSDLPPELEEM 11 39 644.8049926757812 NaN 0 644.8049926757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LSDLPPELEEM(Oxidation (M))_ ENSG00000165259|ENST00000373177|HDX;nc|ENSG00000165259|Q7Z353-2|HDX 2.735195868890462 0.3343611804837492 2 {M(Oxidation (M))|F}{I|L} 2 -1 8.5835 0 0 0.66663 0 0 276.07165663886855 748.3449190729124 1024.416575711781 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.66663 - 4 + NaN NaN 98402.5 NaN 12036 3402 15434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15442 67.326 NaN 1411500 35 0 332340 0.327 + 3788 EPEDHYFLL 9 80 581.7737577473541 1161.5329625615082 2 581.7747802734375 MULTI HCD FTMS 0 0 0 15441 1240931.25 0.9553766830328577 1 -0.03644561767578125 1 Unmodified _EPEDHYFLL_ ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF 53.57557251787612 0.02656881086235134 2 DHY{M(Oxidation (M))|F}{I|L}{I|L} 6 3 36.203 0 0 3.1168 0 0 355.1360031882644 0 355.1360031882644 0 9.260912590556813 0 0 0 1.079689690656103 0 0 0 + DHY{M(Oxidation (M))|F}{I|L}{I|L} 3.1168 + + 125 + NaN NaN 313417.2 NaN 12037 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15443 67.331 NaN 487290 35 0 76653 0.261 + 11931 KFISTSLLL 9 69 511.3180802098471 1020.6216074864942 2 511.3184509277344 MULTI HCD FTMS 0 0 0 15441 424940.4375 1 0 0 2 Unmodified _KFISTSLLL_ ENSG00000156234|ENST00000682537|CXCL13;ENST00000506590.1_1_4:78527019-78531849:+|nuORF 53.40400417844725 0.026808823219830042 2 [K{I|L}]{M(Oxidation (M))|F}STS{I|L}{I|L}{I|L} 9 2 + 65.729 0 0 6.4401 6.4401 94.228 0 0 0 4.137342758552691 45.55130318649368 4.137342758552691 65.728590856098 0 2.110924374808178 0 0.3807196863200844 0 [K{I|L}]{M(Oxidation (M))|F}STS{I|L}{I|L}{I|L} 6.4401 - 236 NaN NaN 164550.4 NaN 12038 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15444 67.334 NaN 1191200 35 0 124050 0.261 + 13714 KYPLLLQSI 9 94 537.8313777905905 1073.648202647981 2 537.831787109375 MULTI HCD FTMS 0 0 0 15441 330225.3125 0.998727396881579 4 -0.12606048583984375 3 Unmodified _KYPLLLQSI_ ENSG00000076928|ENST00000354532|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 86.33184430468982 0.004622086694044132 2 [{M(Oxidation (M))|F}V][VG]V{I|L}{I|L}QS{I|L} 10 5 + 52.433 0 0 4.8836 4.8836 83.273 0 0 0 0.4035662425335502 8.742209500285014 0.4035662425335502 2.7126659626698313 0 1.7302046884880937 1.6989700043360187 0.3807196863200844 0 [{M(Oxidation (M))|F}V][VG]V{I|L}{I|L}QS{I|L};[YK][{I|L}P]{I|L}{I|L}QS{I|L};[Q{I|L}]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}QS{I|L};[{M(Oxidation (M))|F}V][VG]V{I|L}{I|L}[AG]S{I|L};[YK][{I|L}P]{I|L}{I|L}[AG]S{I|L};[Q{I|L}]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}[AG]S{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[K{I|L}]{I|L}{I|L}QS{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[K{I|L}]{I|L}{I|L}[AG]S{I|L};[{M(Oxidation (M))|F}V][VG]V{I|L}{I|L}{[CP]|[EA]}K;[YK][{I|L}P]{I|L}{I|L}{[CP]|[EA]}K 4.8836;4.631;4.5295;4.03;3.7733;3.6718;3.5339;2.6763;2.5771;2.3244 -;+;-;-;-;-;-;-;-;- + 823 NaN NaN 288612.7 NaN 12039 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15445 67.338 NaN 526920 35 0 51780 0.261 + 5207 FFDAELSQM 9 67 552.2391290246032 1102.4637051160064 2 552.2392578125 MULTI HCD FTMS 0 0 0 15441 135714.921875 0.03769644280672906 87 -2.3473587036132812 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 86.33184430468982 0.004622086694044132 2 QS{I|L}EA{M(Oxidation (M))|F}{I|L}M 8 7 73.335 0 0 6.6519 0 0 165.0458241193375 0 165.0458241193375 0 71.11682282725457 0 0 0 2.774227503252014 0 0.28872548999643577 0.28872548999643577 QS{I|L}EA{M(Oxidation (M))|F}{I|L}M 6.6519 - 442 NaN NaN 173174 NaN 12040 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15446 67.341 NaN 190130 35 0 28066 0.262 + 24480 RYLDVSILGKF 11 48 437.5866945028399 1309.7382541087197 3 437.58685302734375 MULTI HCD FTMS 0 0 0 15441 104427.8203125 0.6384760159530625 4 -0.12606048583984375 5 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 18.85280530406059 0.2928173010335971 2 VS{I|L}{I|L}[KG]{M(Oxidation (M))|F} 7 4 42.44 0 0 3.2403 0 0 547.2743397443375 0 547.2743397443375 0 38.46024470058502 0 0 0 1.5 0 0.5 0 + VS{I|L}{I|L}[KG]{M(Oxidation (M))|F} 3.2403 + + 26 NaN NaN 109415.1 NaN 12041 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15447 67.344 NaN 640390 35 0 24783 0.261 -1 0 104 574.0162610580053 4011.0628921398365 7 574.2943725585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 QKD{I|L}[VS]A{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 10 -1 37.371 0 0 0.93171 0 0 2900.506137683963 0 2900.506137683963 0 -3.0263773493533463 -3.0263773493533463 0 0 0 0 1.0941876774005248 0.28872548999643577 QKD{I|L}[VS]A{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 0.93171 - 3960 + NaN NaN 202630.4 NaN 12042 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15448 67.348 NaN 189670 35 0 29284 0.261 -1 0 55 638.3888160189484 1912.1446186570452 3 638.7238159179688 MULTI HCD FTMS 0 0 0 15441 67550.015625 0.8163866082186463 1 -0.03644561767578125 7 NaN NaN 2 [YN]{I|L} 3 -1 22.676 0 0 1.1859 0 0 0 1518.9317476772706 1518.9317476772706 17.191512336730028 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 1.1859 - 31 NaN NaN 120516.4 NaN 12043 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15449 67.351 NaN 194680 35 0 20146 0.261 + 6796 FPSAFDLSLL 10 59 555.2971271592697 1108.5797013853394 2 555.2978515625 MULTI HCD FTMS 0 0 0 15441 68023.546875 0.9561558183366166 1 -0.03644561767578125 8 Unmodified _FPSAFDLSLL_ REV__ENSG00000165288|ENST00000373275|BRWD3;REV__ENST00000473691.1_1_X:79938122-79975072:-|nuORF;REV__nc|ENSG00000165288|Q6RI45-2|BRWD3;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3;REV__nc|ENSG00000165288|Q6RI45-4|BRWD3;REV__nc|ENSG00000165288|Q6RI45-5|BRWD3 20.453626601364224 0.3197956946484955 2 PE 2 -1 12.474 0 0 1.1252 0 0 864.470018455275 0 864.470018455275 0 0.5018527255878151 0 0 0 0 0 0 0 PE 1.1252 - 24 NaN NaN 124117.4 NaN 12044 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15450 67.354 NaN 327230 35 0 23219 0.261 + 28238 TLIDLPGITR 10 83 549.829072061575 1097.6435911899498 2 549.8292846679688 MULTI HCD FTMS 0 0 0 15441 42309.96875 0.48466879238029303 -6 0.16979217529296875 9 Unmodified _TLIDLPGITR_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 23.789781309258295 0.28859042913526417 2 [{I|L}T]{I|L}D 4 6 48.5 0 0 4.4186 0 0 0 652.3784484587616 652.3784484587616 33.349621957594096 0 0 0 0 1.2302046884880937 2 0 0 + [{I|L}T]{I|L}D 4.4186 + + 418 + NaN NaN 133965.4 NaN 12045 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15451 67.358 NaN 136960 35 0 5896.8 0.261 + 34042 YNASGSEHCYD 11 56 623.2257465759553 1244.4369402187106 2 623.7276000976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _YNASGSEHCYD_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 2.9952420565917617 0.40578455234410343 2 [YN]AW 4 8 28.672 0 0 2.304 0 0 0 707.1907603693543 707.1907603693543 21.682437647924218 0 0 0 0 0 1.6989700043360187 0 0 [YN]AW 2.304 - 26 NaN NaN 112588.1 NaN 12046 3403 15441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15453 67.363 NaN 443300 35 0 35387 0.327 + 12762 KYDEIFYNL 9 75 602.7977562185981 1203.5809595039962 2 603.3001098632812 MULTI HCD FTMS 0 0 0 15452 168538.015625 0.029201514502038922 26 -0.7244338989257812 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 40.72490554402381 0.06201705472789164 2 {I|L}{M(Oxidation (M))|F}YN{I|L} 5 4 52.959 0 0 4.4001 0 0 535.2254505841812 0 535.2254505841812 0 30.31230274410074 0 0 0 1.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}YN{I|L} 4.4001 + + 888 NaN NaN 158954.4 NaN 12047 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15454 67.367 NaN 624000 35 0 78153 0.261 + 14001 KYSPFVVSF 9 75 537.2869228892054 1072.5592928452106 2 537.2870483398438 MULTI HCD FTMS 0 0 0 15452 173108.953125 0.04653090919879383 16 -0.46270751953125 2 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 59.368380827593164 0.01846506874148156 2 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 56.862 0 0 5.3016 5.3016 88.365 0 0 0 3.65279269351241 5.426740567922437 3.65279269351241 10.012714607746318 0 2.610924374808178 0 0.841129063296272 0 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SP[YK]VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VP[YK]VS{M(Oxidation (M))|F};[YK][PG][Y{I|L}]VS{M(Oxidation (M))|F};[YK][{I|L}P][YG]VS{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}P[YK]VS{M(Oxidation (M))|F} 5.3016;4.368;4.0249;3.6719;3.1331;2.8858 +;-;-;-;-;- + 360 + NaN NaN 197080.5 NaN 12048 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15455 67.371 NaN 430790 35 0 68220 0.262 + 5446 FIFYWNLFF 9 55 432.8852106374738 NaN 0 432.8853454589844 PEAK HCD FTMS 0 0 0 15452 141936.59375 0.7262391794947889 46 -1.2517929077148438 3 Unmodified _FIFYWNLFF_ REV__ENST00000316448.9_1_19:13054757-13054979:+|nuORF 5.296884461304476 0.2695788793730278 2 {I|L}{M(Oxidation (M))|F}Y 3 -1 11.972 0 0 1.3861 0 0 130.3645852380351 307.15122400455317 437.51580924258826 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}Y 1.3861 + + 15 + NaN NaN 160411.9 NaN 12049 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15456 67.374 NaN 316290 35 0 20491 0.261 -1 SYMGHFDLL 9 81 549.7495028796063 1097.4844528260126 2 549.7491455078125 MULTI HCD FTMS 0 0 0 15452 29952.470703125 0.31339741499522494 8 -0.223297119140625 4 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 28.486842064014134 0.11819662193267319 2 [{I|L}T]{I|L}D{I|L}{[QS]|[NT]}{I|L} 8 -1 33.338 0 0 3.0377 0 0 0 210.94864455110442 210.94864455110442 13.249256301612746 0 0 0 0 0 2 0.3494850021680094 0 [{I|L}T]{I|L}D{I|L}{[QS]|[NT]}{I|L} 3.0377 - 168 NaN NaN 142056 NaN 12050 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15457 67.378 NaN 172340 35 0 22581 0.263 -1 PYHCTYCNF 9 59 421.16326951940647 1260.4679791584194 3 421.16412353515625 MULTI HCD FTMS 0 0 0 15452 17957.8984375 0.38023130875383865 1 -0.026519775390625 5 2 Carbamidomethyl (C) _PYHC(Carbamidomethyl (C))TYC(Carbamidomethyl (C))NF_ ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1 2.9952420565917617 0.3283108881486655 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3479 0 0 1095.3891502783397 0 1095.3891502783397 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3479 + + 10 + NaN NaN 126218.5 NaN 12051 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15458 67.381 NaN 107030 35 0 7185.1 0.261 -1 CHGCLCEALL 10 41 588.2547237972022 1174.4948946612044 2 588.7643432617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))HGCLC(Carbamidomethyl (C))EALL_ ENST00000373209.2_1_10:72358109-72358358:-|nuORF 3.944395688203298 0.4544253912184634 2 {I|L} 1 -1 6.9897 0 0 0.59512 0 0 148.08913485955264 910.3000329823293 1058.389167841882 0 0 0 0 0 0 0 0 0 {I|L} 0.59512 + + 4 + NaN NaN 111388.7 NaN 12052 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15459 67.384 NaN 76444 35 0 7529.9 0.263 + 16588 LVGLLIALK 9 40 470.332275390625 NaN 0 470.332275390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LVGLLIALK_ REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1 0 0.29524684227089293 2 E 1 -1 4.6041 0 0 0.4905 0 0 318.1297966779312 488.44159876041255 806.5713954383438 0 0 0 0 0 0 0 0 0 E 0.4905 - 1 + NaN NaN 97686.7 NaN 12053 3404 15452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15461 67.389 NaN 1970800 35 0 853070 0.326 + 10785 ISPGRYFLL 9 75 533.3081646102079 1064.6017762872157 2 533.3084716796875 MULTI HCD FTMS 0 0 0 15460 855069.625 0.6939075214262006 3 -0.08640289306640625 1 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 36.506200033944 0.08138327636155518 2 {[TV]|[{I|L}S]}PG[YR]{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 50.028 0 0 4.6992 4.6992 91.053 0 0 0 1.3553779588526993 28.24462415139152 1.3553779588526993 50.027515650137104 0 1.242992819099939 1.6989700043360187 0.3494850021680094 0 + + {[TV]|[{I|L}S]}PG[YR]{M(Oxidation (M))|F}{I|L}{I|L} 4.6992 + + 104 NaN NaN 387196.7 NaN 12054 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15462 67.394 NaN 461940 35 0 57073 0.261 + 24309 RYGDLVDYL 9 68 557.2820491375894 1112.5495453419787 2 557.2825927734375 MULTI HCD FTMS 0 0 0 15460 122161.84375 0.4720089417993379 -1 0.026519775390625 2 Unmodified _RYGDLVDYL_ ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant 16.149105407346934 0.22083165093524068 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}V{[NV]|[RG]}DY{I|L} 9 4 + 49.631 0 0 4.461 4.461 89.588 0 0 0 7.068263180832801 17.293191455385397 7.068263180832801 26.052207222934378 0 1 1.3979400086720375 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}V{[NV]|[RG]}DY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DVD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}V{[NV]|[RG]}[YE]V 4.461;2.1194;1.8974 -;-;- 159 NaN NaN 159033.4 NaN 12055 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15463 67.398 NaN 374360 35 0 47628 0.261 -1 FPFYYEIKM 9 57 627.298453891388 1252.582354849576 2 626.7951049804688 MULTI HCD FTMS 0 0 0 15460 149817.390625 0.2629572133105759 -5 0.14263153076171875 3 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 5.731851221503515 0.3075653528928475 2 Y{M(Oxidation (M))|F}[EP] 4 -1 13.188 0 0 1.0528 0 0 698.329881736525 0 698.329881736525 0 2.2184874961635614 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}[EP] 1.0528 - 60 NaN NaN 154554.2 NaN 12056 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15464 67.401 NaN 551940 35 0 40013 0.261 + 2924 DYSPYFKTI 9 83 567.2792195549672 1132.5438861767343 2 567.2796020507812 MULTI HCD FTMS 0 0 0 15460 203069.75 0.00965820049149538 167 -4.386924743652344 4 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 87.25819977447905 0.004597812622239197 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 77.959 0 0 6.8835 6.8835 92.772 0 0 0 24.76203644159419 46.774692464335374 24.76203644159419 18.523298645589414 0 2.031718309096375 2 0.9559771852360797 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[KA]{[QS]|[NT]}E[RH];{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[C(Carbamidomethyl (C))K]E[RH] 6.8835;5.248;0.85018;0.032691 +;-;-;- + 505 NaN NaN 180939.2 NaN 12057 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15465 67.404 NaN 776540 35 0 62712 0.261 -1 YMTGLTASLF 10 103 560.2721952827537 1118.5298376323074 2 561.2890625 MULTI HCD FTMS 0 0 0 15460 6696.23193359375 0.14256840514140529 -1 0.026519775390625 5 Oxidation (M) _YM(Oxidation (M))TGLTASLF_ ENSG00000176495|ENST00000641998|OR5AN1 20.453626601364224 0.3197956946484955 2 YR{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 -1 + 50.198 0 0 4.4879 4.4879 82.369 0 0 0 3.83037118858973 4.911356165197844 3.83037118858973 1.7609125905568135 0 0.3494850021680094 0 0.5891368308784531 0 YR{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};YR{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};YR{M(Oxidation (M))|F}{I|L}KDM{M(Oxidation (M))|F};YGV{M(Oxidation (M))|F}[PS][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}V{[DS]|[MA]|[CV]|TT};YGV{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}K{I|L}S[DV]{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}KTV[DV]{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}K{I|L}EVGY;[YT]{M(Oxidation (M))|F}K{I|L}S[TP]Y 4.4879;4.3305;4.216;3.8476;3.8023;3.6902;3.3787;3.2418;3.0282;2.9317 -;-;-;-;-;-;-;-;-;- 2050 + NaN NaN 214746 NaN 12058 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15466 67.407 NaN 387050 35 0 33278 0.261 -1 KYMDVQFDF 9 62 604.7681072670384 1207.5216616008768 2 604.7688598632812 MULTI HCD FTMS 0 0 0 15460 147839.75 0.04315924830556823 85 -2.284393310546875 6 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 38.61474834105838 0.07170385841135779 2 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 57.995 0 0 4.8029 0 0 262.0952625959 0 262.0952625959 0 36.52957942217668 0 0 0 1.4247425010840047 0 0 0.3807196863200844 N{I|L}YQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8029 - 974 NaN NaN 149706.4 NaN 12059 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15467 67.411 NaN 423070 35 0 87058 0.261 + 30406 VLPARYFYI 9 76 571.3235361775751 1140.63251942195 2 571.3241577148438 MULTI HCD FTMS 0 0 0 15460 75040.3359375 0.29663762251188414 7 -0.19677734375 7 Unmodified _VLPARYFYI_ ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103443606-103451020:-|nuORF 21.74664581756881 0.17247014374749275 2 Y{I|L} 2 7 23.711 0 0 2.0788 0 0 846.4755348164507 0 846.4755348164507 0 7.474250108400469 0 0 0 0.4247425010840047 0 0 0 + Y{I|L} 2.0788 + + 190 NaN NaN 162302.7 NaN 12060 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15468 67.414 NaN 407890 35 0 87756 0.261 -1 AYPPAPFMHIL 11 46 636.8255856326033 1271.6366183320065 2 637.3274536132812 MULTI HCD FTMS 0 0 0 15460 55212.46484375 0.7539727568063976 3 -0.08640289306640625 8 Oxidation (M) _AYPPAPFM(Oxidation (M))HIL_ ENSG00000143569|ENST00000428931|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L 10.823927491677226 0.3627731766506869 2 Y{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.649 0 0 943.5515707902981 0 943.5515707902981 0 7.769250191953672 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.649 - 10 NaN NaN 147412 NaN 12061 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15469 67.417 NaN 128680 35 0 10478 0.264 + -1 FWWLCHCMGI 10 45 451.52873541262045 1351.5643768380614 3 451.52923583984375 MULTI HCD FTMS 0 0 0 15460 55730.60546875 0.48036317077028756 -5 0.14263153076171875 9 Carbamidomethyl (C) _FWWLCHC(Carbamidomethyl (C))MGI_ REV__ENST00000261837.11_1_15:52433460-52439712:-|nuORF 0.776531954647913 0.4711933975711956 2 {M(Oxidation (M))|F}[TA] 3 -1 5.6864 0 0 0.42072 0 0 1014.4260539394271 0 1014.4260539394271 0 1.7069622716897488 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[TA] 0.42072 - 11 + NaN NaN 121521.4 NaN 12062 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15470 67.421 NaN 164840 35 0 14519 0.261 -1 ACKVLCAL 8 60 467.74783668949584 NaN 0 467.57135009765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 2 Carbamidomethyl (C) _AC(Carbamidomethyl (C))KVLC(Carbamidomethyl (C))AL_ ENST00000002596.5_1_4:11430368-11430548:-|nuORF 5.230669730166228 0.38822285293237185 2 A 1 -1 5.4846 0 0 0.58754 0 0 131.0954976905668 728.3268526666624 859.4223503572291 0 0 0 0 0 0 0 0 0 A 0.58754 + + 4 + NaN NaN 115386.3 NaN 12063 3405 15460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15472 67.426 NaN 1770100 35 0 171210 0.326 + 13344 KYMDVQFDF 9 98 596.770743768414 1191.526934603628 2 596.7711181640625 MULTI HCD FTMS 0 0 0 15471 764834.625 0.27098007582351025 5 -0.13410186767578125 1 Unmodified _KYMDVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 128.57297698046145 0.0006915168155602875 2 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 99.095 0 0 8.3167 8.3167 90.133 0 0 0 5.536049848239344 10.505463707196824 5.536049848239344 5.536049848239344 0 2.6989700043360187 0 1.3494850021680094 1.3996498648046138 + + [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}Q{M(Oxidation (M))|F}V{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{[CA]|SS}{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.3167;7.852;7.7999;7.5439;7.0792;7.0275;7.0271;6.9725;6.9141;6.8859 +;-;-;-;-;-;-;-;-;- + 3911 NaN NaN 369993.4 NaN 12064 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15473 67.43 NaN 1224300 35 0 62380 0.261 + 5354 FFYKHCMHK 9 101 620.7928942634255 1239.571235593651 2 621.274169921875 MULTI HCD FTMS 0 0 0 15471 48464.25390625 1 0 0 2 Unmodified _FFYKHCMHK_ ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C 11.640296217721598 0.25978676193971967 2 M{[SA]|[TG]}AWVYVA{[QD]|[EN]|[WG]|[KD]|[RS]} 11 10 + 51.062 0 0 4.1193 4.1193 82.766 0 0 0 3.5654732351381213 7.0865254442813 3.5654732351381213 3.8334981592577932 0 2.1549471895720984 0 0 0.2302046884880938 M{[SA]|[TG]}AWVYVA{[QD]|[EN]|[WG]|[KD]|[RS]};M[QT]WVYVA{[QD]|[EN]|[WG]|[KD]|[RS]};M{[SA]|[TG]}AWVYY[H{I|L}];M{[SA]|[TG]}AWVYV[WQ];M[QT]WVYY[H{I|L}];M[QT]WVYV[WQ];{[C(Carbamidomethyl (C))E]|[WC]}A{[DA]|[EG]}VYVA{[QD]|[EN]|[WG]|[KD]|[RS]};{[C(Carbamidomethyl (C))E]|[WC]}AW[KP]R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};M{[SA]|[TG]}AWVWK{[{M(Oxidation (M))|F}D]|MM};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}N[NG]V[{M(Oxidation (M))|F}T]P[KC] 4.1193;3.8101;3.5476;3.4031;3.2419;3.0974;3.0924;2.3097;2.2917;2.2511 -;-;-;-;-;-;-;-;-;- 4682 + NaN NaN 281040.7 NaN 12065 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15474 67.434 NaN 700890 35 0 99813 0.262 + 27127 SYMGHFDLL 9 85 541.7523669874173 1081.4901810416345 2 541.7523193359375 MULTI HCD FTMS 0 0 0 15471 369861.8125 0.08740370775080826 12 -0.34072113037109375 3 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 78.14939416004806 0.006451203201226903 2 {I|L}D{M(Oxidation (M))|F}{[HG]|PP}C{I|L}{M(Oxidation (M))|F} 8 5 50.117 0 0 4.6341 0 0 131.0944018746847 0 131.0944018746847 0 38.233631204762766 0 0 0 2.048455006504028 0 0.7059771852360797 0 {I|L}D{M(Oxidation (M))|F}{[HG]|PP}C{I|L}{M(Oxidation (M))|F} 4.6341 - 412 + NaN NaN 192416.4 NaN 12066 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15475 67.437 NaN 697450 35 0 171060 0.261 + 735 ARHWNLSL 8 65 498.77166199513505 995.5287710570701 2 498.7718200683594 MULTI HCD FTMS 0 0 0 15471 296459.46875 0.39907328135248477 4 -0.10411834716796875 4 Unmodified _ARHWNLSL_ REV__nc|ENSG00000111341|P08493-2|MGP 46.020951573049366 0.15358337540685318 2 S[KC]N{I|L}S{I|L} 7 -1 61.643 0 0 6.192 0 0 232.14332778144689 0 232.14332778144689 0 46.950010276180336 0 0 0 1.8494850021680094 0 0.4247425010840047 0.805462187404089 S[KC]N{I|L}S{I|L} 6.192 - 312 NaN NaN 185900.4 NaN 12067 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15476 67.441 NaN 782180 35 0 89595 0.261 + 20010 NYIGISLRI 9 70 524.8110609641684 1047.6075689951367 2 524.8114013671875 MULTI HCD FTMS 0 0 0 15471 405572.875 0.6343196985294111 4 -0.10411834716796875 5 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 114.18643581695662 0.002258955990713129 2 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 108.32 0 0 10.34 10.34 92.705 0 0 0 26.629216203607598 16.478174818886373 16.478174818886373 7.085521743960328 0 2.7302046884880937 1.6989700043360187 0.7134679910804405 1.7051120522087029 + + [YN]{I|L}G{I|L}S{I|L}R{I|L};[YN]{I|L}G{I|L}SR{I|L}{I|L};[YN]{I|L}G{I|L}RS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}S{I|L}R{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[TP]S{I|L}R{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RG{I|L}S{I|L}[VG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}SR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}RS{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K[TP]SR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]G{I|L}S{I|L}[VG]{I|L} 10.34;9.6635;8.9782;5.3548;4.8372;4.6812;4.6784;4.2848;4.1608;4.1166 +;-;-;-;-;-;-;-;-;- + 869 NaN NaN 226528.6 NaN 12068 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15477 67.444 NaN 454350 35 0 67663 0.261 + 24807 RYPDTIALTF 10 66 598.8188648316949 1195.6231767301897 2 599.3206787109375 MULTI HCD FTMS 0 0 0 15471 134299.984375 0.3475792223690419 4 -0.10411834716796875 6 Unmodified _RYPDTIALTF_ ENSG00000137802|ENST00000457542|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 40.23920728925047 0.14333095755487663 2 {I|L}A[TP]DA{I|L}T{M(Oxidation (M))|F} 9 4 56.648 0 0 4.738 0 0 248.11525160957189 0 248.11525160957189 0 53.153434601012606 0 0 0 1.2302046884880937 0 0.4247425010840047 0 {I|L}A[TP]DA{I|L}T{M(Oxidation (M))|F} 4.738 - 355 NaN NaN 162139 NaN 12069 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15478 67.447 NaN 467830 35 0 47668 0.261 + 5301 FFIAGRYEF 9 84 575.2896519485868 1148.5647509639734 2 575.2890625 MULTI HCD FTMS 0 0 0 15471 154920.21875 0.7210196453956204 -3 0.0994415283203125 7 Unmodified _FFIAGRYEF_ ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1 36.506200033944 0.08138327636155518 2 NA{I|L}E{M(Oxidation (M))|F} 5 6 54.196 0 0 4.7186 0 0 556.2760487287125 0 556.2760487287125 0 32.8722497583518 0 0 0 1.9247425010840047 0 0 0 NA{I|L}E{M(Oxidation (M))|F} 4.7186 - 1585 NaN NaN 166389.9 NaN 12070 3406 15471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15480 67.452 NaN 2525400 35 0 316380 0.327 + 13244 KYMDIEFDF 9 106 612.2680622783852 1222.5215716235703 2 612.2684936523438 MULTI HCD FTMS 0 0 0 15479 1814827.375 0.5939986762224997 5 -0.1336822509765625 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 89.121 0 0 7.2899 7.2899 89.15 0 0 0 2.922152515121226 50.69984993812689 2.922152515121226 7.187200862615697 0 3.0114393726401687 0 1.7614393726401687 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}C]|[YS]}[VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]DK{M(Oxidation (M))|F} 7.2899;6.702;6.3525;4.2513;3.376;3.1913;2.8297;2.2182;2.0983;2.0644 +;-;-;-;-;-;-;-;-;- + 6778 NaN NaN 477538.6 NaN 12071 3407 15479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15481 67.457 NaN 1116500 35 0 198690 0.262 + 15399 LPDHINIVL 9 71 517.3054319333767 1032.5963109335532 2 517.3058471679688 MULTI HCD FTMS 0 0 0 15479 309706.28125 0.47392481301667705 -2 0.0630950927734375 2 Unmodified _LPDHINIVL_ ENSG00000120526|ENST00000239690|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1 31.26834338654808 0.10542797264966089 2 {I|L}N{I|L}V{I|L} 5 4 51.81 0 0 5.0175 0 0 462.2225269430507 0 462.2225269430507 0 20.127881306118454 0 0 0 0.8494850021680094 0 0 0.6861818737241735 + {I|L}N{I|L}V{I|L} 5.0175 + + 497 NaN NaN 262279.2 NaN 12072 3407 15479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15482 67.461 NaN 1050900 35 0 162000 0.261 + 12873 KYFPEPELF 9 102 585.2978297164588 NaN 0 585.2980346679688 PEAK HCD FTMS 0 0 0 15479 105661.5703125 0.6766396954974507 4 -0.10748291015625 3 Unmodified _KYFPEPELF_ ENSG00000146233|ENST00000275016|CYP39A1 45.69961567697781 0.05999643521280087 2 {I|L}NA[WE]AN 7 8 27.044 0 0 2.3142 0 0 129.0813767051182 238.11945520572502 367.20083191084325 0 0 0 0 0 0 0 0.6505149978319906 0.9604093769761877 {I|L}NA[WE]AN 2.3142 - 866 + NaN NaN 246353.5 NaN 12073 3407 15479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15483 67.464 NaN 266000 35 0 21952 0.261 + 11166 IYIVGGCLHEL 11 52 608.8226906770728 1215.6308284209456 2 608.8244018554688 MULTI HCD FTMS 0 0 0 15479 33423.8828125 0.3295159125906413 -3 0.0896148681640625 4 Unmodified _IYIVGGCLHEL_ ENSG00000087448|ENST00000381271|KLHL42 32.89776655970281 0.18269067959614227 2 [Y{I|L}]{I|L}VG 5 6 58.456 0 0 4.8087 0 0 0 667.2871757946392 667.2871757946392 55.98136244196333 0 0 0 0 1.9247425010840047 1.6989700043360187 0 0 + [Y{I|L}]{I|L}VG 4.8087 + + 63 + NaN NaN 131102.8 NaN 12074 3407 15479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15484 67.467 NaN 300310 35 0 24480 0.261 + 33411 YGRIEILSGF 10 59 577.813821259701 1153.6130895862018 2 577.8139038085938 MULTI HCD FTMS 0 0 0 15479 45854.0859375 0.21105956716075167 -3 0.0896148681640625 5 Unmodified _YGRIEILSGF_ ENSG00000145740|ENST00000396591|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;nc|ENSG00000145740|Q8TAD4-2|SLC30A5 24.990960013464015 0.27735500881591096 2 [HA]T{I|L}{I|L}[DV]{I|L}SW 10 8 + 54.43 0 0 4.7182 4.7182 82.685 0 0 0 30.154856465551987 0.5237875363565792 0.5237875363565792 1.7609125905568135 0 1.4247425010840047 0 0.3807196863200844 0 [HA]T{I|L}{I|L}[DV]{I|L}SW;[HA]T{I|L}{I|L}EVVSW;[HA]T{I|L}[DV]{I|L}{I|L}SW;[Y{I|L}]{[NV]|[RG]}E{I|L}{I|L}[YQ];[Y{I|L}]Q[DV]{I|L}[VP][HA];[Y{I|L}]{[NV]|[RG]}E{I|L}[VP][HA];[Y{I|L}]Q{I|L}[DV][VP][HA];{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[DV]{I|L}[VP][HA];[YQ]{I|L}[DV]{I|L}[VP][HA];{[CT]|[{M(Oxidation (M))|F}G]}SVVE{I|L}[VP][HA] 4.7182;4.5656;4.1963;3.8207;2.3933;2.2407;1.8714;1.0141;0.966;0.86148 -;-;-;-;-;-;-;-;-;- 853 + NaN NaN 137836.5 NaN 12075 3407 15479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15485 67.471 NaN 211620 35 0 22506 0.263 + 20213 NYLIHRICRVL 11 62 467.2705403074176 1398.7897915224528 3 467.2709045410156 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NYLIHRICRVL_ REV__ENSG00000126561|ENST00000590949|STAT5A;REV__ENSG00000173757|ENST00000293328|STAT5B;REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF 4.11662792887243 0.40086653484894175 2 [YN]{I|L} 3 -1 38.2 0 0 2.7309 0 0 0 1005.5760053009369 1005.5760053009369 21.5443874496362 0 0 0 0 0.7742275032520141 2 0 0 [YN]{I|L} 2.7309 + + 53 + NaN NaN 116675.5 NaN 12076 3407 15479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15487 67.476 NaN 603220 35 0 137160 0.327 + 3789 EPEDHYFLL 9 56 581.7737577473541 1161.5329625615082 2 581.7744140625 MULTI HCD FTMS 0 0 0 15486 369929.875 0.2848041556953777 6 -0.17278289794921875 1 Unmodified _EPEDHYFLL_ ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF 23.1484247019978 0.1603590852062899 2 {I|L}{I|L} 2 7 20.573 0 0 1.7712 0 0 917.3495674349319 0 917.3495674349319 0 8.266062568876718 0 0 0 0.5 0 0 0 + {I|L}{I|L} 1.7712 + + 46 NaN NaN 181167.5 NaN 12077 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15488 67.48 NaN 666970 35 0 73782 0.261 + 11932 KFISTSLLL 9 85 511.3180802098471 1020.6216074864942 2 511.3183288574219 MULTI HCD FTMS 0 0 0 15486 189956.65625 0.44701948670159214 5 -0.14330291748046875 2 Unmodified _KFISTSLLL_ ENSG00000156234|ENST00000682537|CXCL13;ENST00000506590.1_1_4:78527019-78531849:+|nuORF 67.83816525789305 0.009787749748478139 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}STS{I|L}{I|L}{I|L} 9 0 + 58.343 0 0 5.7164 5.7164 83.886 0 0 0 0.8460550734051111 15.490415936753031 0.8460550734051111 0.8460550734051111 0 2.2689301784845295 0 0.3807196863200844 0.3252574989159953 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}STS{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSTS{I|L}{I|L}{I|L};{[TV]|[{I|L}S]}[KT]{M(Oxidation (M))|F}S{I|L}{I|L}{I|L};{I|L}{I|L}S{I|L}{[MG]|[TS]}{M(Oxidation (M))|F}K{I|L};{[TV]|[{I|L}S]}{I|L}{I|L}{[MG]|[TS]}{M(Oxidation (M))|F}K{I|L};{I|L}{I|L}S{I|L}{[MG]|[TS]}{M(Oxidation (M))|F}{I|L}K;{[TV]|[{I|L}S]}{I|L}{I|L}{[MG]|[TS]}{M(Oxidation (M))|F}{I|L}K 5.7164;5.6335;4.3362;1.7617;1.02;0.93366;0.19199 +;-;-;-;-;-;- + 956 NaN NaN 190359.3 NaN 12078 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15489 67.484 NaN 1212200 35 0 178090 0.261 + 33364 YGHLELIQL 9 97 543.3029854467579 1084.5914179603158 2 543.303466796875 MULTI HCD FTMS 0 0 0 15486 288439.71875 0.17011358118144687 -5 0.1493682861328125 3 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 69.10491478415734 0.009377850133389008 2 {I|L}DE{I|L}{I|L}Q{I|L} 7 4 65.341 0 0 6.0244 0 0 242.12645156074376 0 242.12645156074376 0 51.63888870249359 0 0 0 2.079689690656103 0 0.25 0.3494850021680094 {I|L}DE{I|L}{I|L}Q{I|L} 6.0244 - 780 NaN NaN 277375.2 NaN 12079 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15490 67.487 NaN 531900 35 0 43262 0.261 + 5208 FFDAELSQM 9 58 552.2391290246032 1102.4637051160064 2 552.239501953125 MULTI HCD FTMS 0 0 0 15486 138928.1875 0.038588965767227146 92 -2.4691314697265625 4 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 92.65332237495696 0.004456439685314431 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 78.253 0 0 7.098 7.098 89.808 0 0 0 3.2568864632742844 63.648896679559 3.2568864632742844 9.208187539523735 0 2.3494850021680094 0 1.394599018282542 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F} 7.098;6.2628 +;- + 370 NaN NaN 168803.3 NaN 12080 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15491 67.491 NaN 347860 35 0 35096 0.261 + -1 FNKMKNMIM 9 69 594.7844176462197 1187.5542823592393 2 595.301513671875 MULTI HCD FTMS 0 0 0 15486 40418.8359375 0.1542842690559723 20 -0.559356689453125 5 2 Oxidation (M) _FNKM(Oxidation (M))KNMIM(Oxidation (M))_ REV__ENSG00000117266|ENST00000429964|CDK18;REV__nc|ENSG00000117266|Q07002-3|CDK18 11.640296217721598 0.25978676193971967 2 YYH[W{I|L}]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 -1 + 34.843 0 0 2.934 2.934 83.143 0 0 0 7.444641038550156 8.187587626244124 7.444641038550156 7.444641038550156 0 0.5 1.6989700043360187 0 0 YYH[W{I|L}]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{M(Oxidation (M))|F};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}E{I|L}Y{[QD]|[EN]|[WG]|[KD]|[RS]} 2.934;2.3071;1.9861 -;-;- 103 NaN NaN 142507.8 NaN 12081 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15492 67.494 NaN 98198 35 0 17314 0.263 + 9929 IDGIANDIL 9 40 472.25819371884654 942.5018345044931 2 472.258056640625 MULTI HCD FTMS 0 0 0 15486 7515.62451171875 0.059405264189800445 -4 0.11292266845703125 6 Unmodified _IDGIANDIL_ REV__ENSG00000104237|ENST00000220676|RP1 8.745405648335112 0.2847203663274469 2 QD{I|L}{I|L} 4 -1 31.731 0 0 3.3667 0 0 455.23750502754064 0 455.23750502754064 0 30.472176969401 0 0 0 0.5 0 0 0 QD{I|L}{I|L} 3.3667 - 20 NaN NaN 113930.6 NaN 12082 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15493 67.498 NaN 89120 35 0 7035.7 0.261 + -1 TGMLCADF 8 46 437.1782314322854 NaN 0 436.87969970703125 PEAK HCD FTMS 0 0 0 15486 21079.46484375 1 0 0 7 Oxidation (M) _TGM(Oxidation (M))LCADF_ REV__CON__P09870 2.577480529830294 0.38822285293237185 2 {I|L} 1 -1 3.9794 0 0 0.45617 0 0 409.06244323390825 347.17243372135005 756.2348769552583 0 0 0 0 0 0 0 0 0 {I|L} 0.45617 + + 2 + NaN NaN 101034.8 NaN 12083 3408 15486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15495 67.502 NaN 448520 35 0 41970 0.327 + 12763 KYDEIFYNL 9 71 602.7977562185981 1203.5809595039962 2 602.7982177734375 MULTI HCD FTMS 0 0 0 15494 182857.015625 0.022868115082422105 31 -0.8534164428710938 1 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 43.981846655682396 0.04706587046877104 2 [YV]EKE{M(Oxidation (M))|F}YN{I|L} 9 4 + 66.092 0 0 5.4913 5.4913 83.162 0 0 0 11.394615430168997 45.94975513230857 11.394615430168997 0.17220322351953143 0 1.5 1.3010299956639813 0 0 [YV]EKE{M(Oxidation (M))|F}YN{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YN{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YN{I|L};[YV]EKE{M(Oxidation (M))|F}YGG{I|L};[YV]E[SG]{I|L}{M(Oxidation (M))|F}YGG{I|L};[YV][SG]{I|L}E{M(Oxidation (M))|F}YN{I|L};[YV][SG]E{I|L}{M(Oxidation (M))|F}YGG{I|L};[YV][VG]TE{M(Oxidation (M))|F}YN{I|L};[YV]E{M(Oxidation (M))|F}EKYN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YKE{M(Oxidation (M))|F}YN{I|L} 5.4913;5.477;5.2927;4.7263;4.7156;4.5419;4.5312;4.3723;4.3636;4.1046 -;-;-;-;-;-;-;-;-;- 749 NaN NaN 158551.1 NaN 12084 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15496 67.507 NaN 694890 35 0 78215 0.261 + 14002 KYSPFVVSF 9 91 537.2869228892054 1072.5592928452106 2 537.2874755859375 MULTI HCD FTMS 0 0 0 15494 130250.8203125 0.03501083556696802 21 -0.5846633911132812 2 Unmodified _KYSPFVVSF_ ENSG00000086544|ENST00000263370|ITPKC 43.981846655682396 0.04706587046877104 2 [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F} 9 0 + 57.283 0 0 5.3407 5.3407 90.438 0 0 0 7.1585547286986255 27.43961493667151 7.1585547286986255 21.281446971601305 0 2.555462187404089 0 0 0.23965182871044374 + + [YK]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VVS{M(Oxidation (M))|F};[YK][{I|L}P][YG]VS{M(Oxidation (M))|F} 5.3407;3.3566 +;- + 344 NaN NaN 195315 NaN 12085 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15497 67.511 NaN 1862000 35 0 173940 0.261 + 1165 AYLESFYKF 9 110 584.2894496602338 1166.5643463872675 2 584.7919311523438 MULTI HCD FTMS 0 0 0 15494 375146.34375 0.024997502474287104 -6 0.17621612548828125 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 125.52916310638031 0.0008761121089336018 2 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 119.74 0 0 10.264 10.264 93.415 0 0 0 74.09985533039907 14.973024840566467 14.973024840566467 9.055533412997988 0 3.305462187404089 1.6989700043360187 0.5629529932484498 0.2742275032520141 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};AY{I|L}E{M(Oxidation (M))|F}SYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 10.264;9.4881;9.377;8.3995;8.358;8.335;7.4149;7.2695;7.2465;7.2049 +;+;-;-;-;-;-;-;-;- + 8840 + NaN NaN 380124.5 NaN 12086 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15498 67.515 NaN 229380 35 0 17724 0.261 -1 DGRWNVLMDY 10 65 642.788670876087 1283.562788818974 2 642.790283203125 MULTI HCD FTMS 0 0 0 15494 78898.0078125 1 0 0 4 Oxidation (M) _DGRWNVLM(Oxidation (M))DY_ ENSG00000170044|ENST00000466937|ZPLD1;nc|ENSG00000170044|Q8TCW7-2|ZPLD1 4.189502756095605 0.45312800054222196 2 WN 2 -1 18.711 0 0 1.4578 0 0 360.1313118373909 620.3052462213499 980.4365580587407 0 0 0 0 0 0.9247425010840047 0 0 0 WN 1.4578 + + 36 + NaN NaN 131195.2 NaN 12087 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15499 67.518 NaN 98402 35 0 4660.4 0.264 + 15081 LMAPRPWL 8 47 492.28057660287305 NaN 0 492.279296875 PEAK HCD FTMS 0 0 0 15494 8042.71044921875 0.24565256167237617 1 -0.02734375 5 Unmodified _LMAPRPWL_ ENST00000336854.8_1_12:52470999-52471077:+|nuORF 10.183394434864962 0.38822285293237185 2 T 1 8 6.9897 0 0 0.71139 0 0 665.3737314754743 213.10384546451408 878.4775769399884 0 0 0 0 0 0 0 0 0 T 0.71139 - 7 + NaN NaN 99273.8 NaN 12088 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15500 67.521 NaN 126360 35 0 24338 0.262 + 32567 WIPGPGAI 8 39 405.72892355625714 NaN 0 405.7291564941406 PEAK HCD FTMS 0 0 0 15494 68527.7109375 0.90020471170461 -1 0.02684783935546875 6 Unmodified _WIPGPGAI_ ENSG00000168152|ENST00000302236|THAP9;THAP9|p.Y200Lfs*2|1|0.26|ENSG00000168152|chr4:82907801-82907802|-/T|frameshift_variant 17.086550045450526 0.386433553673079 2 {I|L}E 2 7 14.508 0 0 1.7924 0 0 186.07978207169555 378.21409021549067 564.2938722871862 0 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {I|L}E 1.7924 - 24 + NaN NaN 109396.2 NaN 12089 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15501 67.525 NaN 314850 35 0 37154 0.262 + 7494 FWEFFINFYYI 11 72 530.2532813268127 1587.738014580638 3 529.7744750976562 MULTI HCD FTMS 0 0 0 15494 6734.58349609375 0.6874207100808183 -1 0.02684783935546875 7 Unmodified _FWEFFINFYYI_ REV__tr|U7SJQ7|U7SJQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02056PE=4SV=1 0.5059551277355931 0.4167017191902429 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F} 7 -1 24.614 0 0 1.5502 0 0 0 642.3016480715637 642.3016480715637 9.908810449621084 0 0 0 0 0 0 0 0.3054621874040891 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F} 1.5502 - 448 NaN NaN 137224.4 NaN 12090 3409 15494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15503 67.53 NaN 2765100 35 0 414680 0.327 + 33365 YGHLELIQL 9 101 543.3029854467579 1084.5914179603158 2 543.3032836914062 MULTI HCD FTMS 0 0 0 15502 1552309.125 0.9155079803113567 -3 0.0774993896484375 1 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 111.28704002717404 0.0027322905094575235 2 {I|L}DE{I|L}{I|L}Q{I|L} 7 4 74.337 0 0 6.8539 0 0 242.12637526679845 0 242.12637526679845 0 58.35113951948989 0 0 0 2.0994850021680094 0 1.0986198691406328 0.3807196863200844 {I|L}DE{I|L}{I|L}Q{I|L} 6.8539 - 1975 NaN NaN 508325.2 NaN 12091 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15504 67.534 NaN 1260900 35 0 412340 0.261 + 10786 ISPGRYFLL 9 88 533.3081646102079 1064.6017762872157 2 533.308349609375 MULTI HCD FTMS 0 0 0 15502 456140.84375 0.3701681746767912 8 -0.236602783203125 2 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 34.93206674587334 0.08860942999206235 2 {I|L}SP[HA]{I|L}{I|L}AP{M(Oxidation (M))|F} 10 7 + 68.893 0 0 6.4713 6.4713 93.939 0 0 0 29.470675721695088 11.293256987620524 11.293256987620524 51.02305044894763 0 0.5 1.6989700043360187 0.5 0 {I|L}SP[HA]{I|L}{I|L}AP{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[KT]{I|L}KNP{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[KT]{I|L}KGGP{M(Oxidation (M))|F} 6.4713;1.6786;0.81364 -;-;- 1325 + NaN NaN 279007.1 NaN 12092 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15505 67.538 NaN 303140 35 0 34022 0.261 + 3414 EFDFFSPKP 9 69 557.2681320675687 NaN 0 557.282470703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EFDFFSPKP_ REV__ENSG00000230124|ENST00000367595|ACBD6 34.10243960390752 0.09718911733815057 2 YDVA 4 -1 25.745 0 0 2.3141 0 0 131.06305869739964 530.2483004205686 661.3113591179683 0 0 0 0 0 0 0 0.7302046884880937 0 YDVA 2.3141 - 74 + NaN NaN 132177.2 NaN 12093 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15506 67.542 NaN 141120 35 0 15065 0.261 + 11167 IYIVGGCLHEL 11 45 608.8226906770728 1215.6308284209456 2 608.8222045898438 MULTI HCD FTMS 0 0 0 15502 101433.2890625 1 0 0 4 Unmodified _IYIVGGCLHEL_ ENSG00000087448|ENST00000381271|KLHL42 39.212999716063884 0.1420185906124365 2 [Y{I|L}]{I|L}VGQ 6 6 59.213 0 0 4.871 0 0 0 539.2429293268186 539.2429293268186 56.73902187720806 0 0 0 0 1.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L}VGQ 4.871 - 61 + NaN NaN 117030.6 NaN 12094 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15507 67.545 NaN 415840 35 0 60992 0.264 -1 NMRKYRMGLI 10 64 433.2336849029426 1296.679225309028 3 433.2334899902344 MULTI HCD FTMS 0 0 0 15502 80791.4296875 0.5806074702077538 -6 0.1671142578125 5 Oxidation (M) _NM(Oxidation (M))RKYRMGLI_ ENSG00000175354|ENST00000309660|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2 6.1918466704503565 0.44252927588099017 2 {I|L}{I|L} 2 -1 29.776 0 0 2.2964 0 0 1052.501662182039 0 1052.501662182039 0 17.302046884880937 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L} 2.2964 + + 27 NaN NaN 145387.2 NaN 12095 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15508 67.548 NaN 158770 35 0 6191.9 0.261 + 33472 YHPSINDYIH 10 54 629.7969565850366 1257.579360236873 2 629.809326171875 MULTI HCD FTMS 0 0 0 15502 33435.05078125 0.678253151493233 2 -0.056182861328125 6 Unmodified _YHPSINDYIH_ ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2 4.3292370932331545 0.45238836448149167 2 MHY 3 8 26.198 0 0 2.0832 0 0 0 823.3879625508877 823.3879625508877 15.843312243675312 0 0 0 0 0 0 0 0 MHY 2.0832 - 112 + NaN NaN 108523 NaN 12096 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15509 67.552 NaN 155810 35 0 12436 0.264 -1 VTFQDVAI 8 54 467.74783668949584 NaN 0 467.74737548828125 PEAK HCD FTMS 0 0 0 15502 38558.66796875 0.9774120325912964 1 -0.0299835205078125 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VTFQDVAI_ ENST00000467807.5_1_19:56884531-56888546:+|nuORF;ENST00000468396.5_1_19:56884531-56888546:+|nuORF;ENST00000490123.5_1_19:56884531-56886128:+|nuORF;ZNF30|p.E17Q|1|0.23|ENSG00000168661|chr19:34931882-34931882|G/C|missense_variant 16.942295170755138 0.3865212393897457 2 A 1 -1 7.6587 0 0 0.82045 0 0 131.096968169248 728.3247774713499 859.4217456405979 0 0 0 0 0 0.3054621874040891 0 0 0 A 0.82045 + + 34 + NaN NaN 104189.6 NaN 12097 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15510 67.555 NaN 148810 35 0 19404 0.261 + 24481 RYLDVSILGKF 11 52 437.5866945028399 1309.7382541087197 3 437.58685302734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RYLDVSILGKF_ ENSG00000165819|ENST00000298717|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;nc|ENSG00000165819|Q86U44-2|METTL3 14.837902256254086 0.32779928292324945 2 {I|L}[KG]{M(Oxidation (M))|F} 4 7 26.682 0 0 2.0372 0 0 846.4587610697695 0 846.4587610697695 0 14.899701030355157 0 0 0 1.3494850021680094 0 0 0 + {I|L}[KG]{M(Oxidation (M))|F} 2.0372 + + 12 + NaN NaN 110226.9 NaN 12098 3410 15502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15512 67.56 NaN 1284300 35 0 124460 0.327 + 29254 TYLNYVVHL 9 109 561.3022621053185 1120.589971277437 2 561.288818359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TYLNYVVHL_ ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292 20.453626601364224 0.18364154288633264 2 YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 8 7 53.353 0 0 4.7611 0 0 147.06137253539595 0 147.06137253539595 0 -1.853415603609747 -1.853415603609747 0 0 0 0 0.4247425010840047 0 YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 4.7611 - 1781 + NaN NaN 284260.9 NaN 12099 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15513 67.564 NaN 691050 35 0 99223 0.261 -1 FPFYYEIKM 9 72 627.298453891388 1252.582354849576 2 626.794677734375 MULTI HCD FTMS 0 0 0 15511 343180.3125 0.6023448830712312 1 -0.0261993408203125 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 26.268140514670165 0.13340543277302316 2 YWVT{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F} 8 -1 29.887 0 0 2.3861 0 0 166.08742737888116 0 166.08742737888116 0 5.094180576750496 0 0 0 0.5796896906561032 0 0.4247425010840047 0 YWVT{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F} 2.3861 - 844 + NaN NaN 190225.5 NaN 12100 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15514 67.568 NaN 453680 35 0 30426 0.261 + -1 EPAMHKEKF 9 75 566.7768371423638 1131.5391213515275 2 567.2791137695312 MULTI HCD FTMS 0 0 0 15511 208980.921875 0.5965437357412541 -4 0.10748291015625 3 Oxidation (M) _EPAM(Oxidation (M))HKEKF_ REV__ENSG00000059377|ENST00000448866|TBXAS1;REV__ENST00000462275.5_1_7:139529186-139716213:+|nuORF;REV__nc|ENSG00000059377|P24557-2|TBXAS1;REV__nc|ENSG00000059377|P24557-3|TBXAS1;REV__nc|ENSG00000059377|P24557-4|TBXAS1 10.073929032068715 0.27331982688540024 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 25.686 0 0 2.27 0 0 0 763.3939269731692 763.3939269731692 1.974987195809419 0 0 0 0 0 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}S 2.27 - 328 NaN NaN 174171.6 NaN 12101 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15515 67.571 NaN 509580 35 0 40498 0.261 + 13125 KYLINLETL 9 78 553.8262055189011 1105.6378581046022 2 553.82666015625 MULTI HCD FTMS 0 0 0 15511 266794.28125 0.3586095567362168 -5 0.13410186767578125 4 Unmodified _KYLINLETL_ ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant 133.0521902211835 0.0004198702180815479 2 [YK]{I|L}{I|L}N{I|L}ET{I|L} 9 0 + 93.056 0 0 8.4165 8.4165 92.654 0 0 0 4.762036441594191 42.14841568716295 4.762036441594191 9.208187539523749 0 2.6549471895720984 0 0.3054621874040891 1.360924374808178 + + [YK]{I|L}{I|L}N{I|L}ET{I|L};[YK]{I|L}{I|L}GG{I|L}ET{I|L};[YK]{I|L}{I|L}[PS][TA]T{I|L};[{I|L}T]E{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}YK;[{I|L}T]E{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YK]{I|L};[{I|L}T]EN{I|L}{I|L}{I|L}YK;[{I|L}T]EN{I|L}{I|L}[YK]{I|L};[{I|L}T]EGG{I|L}{I|L}{I|L}YK;{[QV]|[N{I|L}]|[RA]|[KV]}ET{I|L}{I|L}{I|L}YK;{[QV]|[N{I|L}]|[RA]|[KV]}ET{I|L}{I|L}[YK]{I|L} 8.4165;7.5837;4.8674;3.6733;3.0485;2.9089;2.2842;2.0761;1.2748;0.6501 +;-;-;-;-;-;-;-;-;- + 654 NaN NaN 166400.3 NaN 12102 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15516 67.574 NaN 189640 35 0 28739 0.262 + 13057 KYLDEFLLNKI 11 44 465.9341898189306 1394.7807400569918 3 465.9340515136719 MULTI HCD FTMS 0 0 0 15511 26176.6484375 0.1857249045492641 -1 0.0299835205078125 5 Unmodified _KYLDEFLLNKI_ ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF;nc|ENSG00000099331|Q13459-2|MYO9B 15.46650911470482 0.3223222107558284 2 {M(Oxidation (M))|F}{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L} 6 5 46.911 0 0 3.3633 0 0 648.3119374005875 0 648.3119374005875 0 44.14701525743869 0 0 0 1.4247425010840047 0 0 0.4247425010840047 + {M(Oxidation (M))|F}{I|L}{I|L}{[QN]|[E{I|L}]|[KN]}{I|L} 3.3633 + + 25 NaN NaN 107978.1 NaN 12103 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15517 67.578 NaN 197290 35 0 15025 0.261 -1 MCPRVFYYF 9 45 634.2859497070312 NaN 0 634.2859497070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MCPRVFYYF_ ENST00000514335.1_1_5:37059194-37059230:+|nuORF 2.302733041254933 0.2840881193086663 2 YAE 3 -1 28.94 0 0 2.2868 0 0 165.07977801754038 734.3293610352446 899.4091390527849 0 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 YAE 2.2868 - 25 + NaN NaN 117440.4 NaN 12104 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15518 67.581 NaN 233550 35 0 7730.3 0.261 + 33473 YHPSINDYIH 10 64 629.7969565850366 1257.579360236873 2 629.7608032226562 MULTI HCD FTMS 0 0 0 15511 22611.439453125 0.45868870273948764 3 -0.0886077880859375 7 Unmodified _YHPSINDYIH_ ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2 7.910154910731844 0.4334339971971892 2 [YN]TWVYY[H{I|L}] 9 6 + 25.864 0 0 2.0566 2.0566 85.91 0 0 0 3.512649075511195 3.212112250009657 3.212112250009657 12.218487496163565 0 0 0 0 0 [YN]TWVYY[H{I|L}];[YN]TWVY{[VA]|[{I|L}G]}{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]TWR[Y{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]TWVG[Y{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]TWV[WK]{[{M(Oxidation (M))|F}D]|MM};MHY[RP][RH]{[{M(Oxidation (M))|F}D]|MM};[YN]T{[DA]|[EG]}R[Y{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]} 2.0566;1.085;0.74202;0.70564;0.66496;0.49202;0.0098075 -;-;-;-;-;-;- 196 + NaN NaN 127515.8 NaN 12105 3411 15511 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15520 67.586 NaN 799990 35 0 70748 0.327 + 13280 KYMDINFDF 9 86 596.770743768414 1191.526934603628 2 596.7708129882812 MULTI HCD FTMS 0 0 0 15519 528688.1875 0.18731364984390475 11 -0.32485198974609375 1 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 100.0907132914201 0.004261551473353346 2 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 2 + 87.986 0 0 7.3843 7.3843 89.906 0 0 0 4.628618393527404 74.91434719156942 4.628618393527404 8.57840941039747 0 2.7302046884880937 0 0.9802046884880937 0.7059771852360797 [YK]MDVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MDV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}AGVQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}DV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}QV[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YV][MD]KQ{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.3843;6.6644;6.6115;6.3245;6.0719;6.0611;5.8916;5.5517;5.5339;5.2883 -;-;-;-;-;-;-;-;-;- 1555 NaN NaN 213545.1 NaN 12106 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15521 67.59 NaN 667660 35 0 32832 0.261 -1 AKEEHCPLAW 10 90 620.7928942634255 1239.571235593651 2 621.2744750976562 MULTI HCD FTMS 0 0 0 15519 15496.439453125 0.31974988169840707 6 -0.180419921875 2 Carbamidomethyl (C) _AKEEHC(Carbamidomethyl (C))PLAW_ ENSG00000121879|ENST00000263967|PIK3CA 16.149105407346934 0.3600587335443843 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 8 -1 38.933 0 0 3.1408 0 0 63.03561544481938 0 63.03561544481938 0 -2.4080374776506375 -2.4080374776506375 0 0 0 0 0 0.3807196863200844 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.1408 - 2152 + NaN NaN 188439.4 NaN 12107 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15522 67.594 NaN 325960 35 0 30811 0.261 -1 DLMGDVYFFD 10 69 619.2578014468693 1236.5010499605385 2 619.2579345703125 MULTI HCD FTMS 0 0 0 15519 202923.84375 0.6766817935129213 -3 0.083526611328125 3 Oxidation (M) _DLM(Oxidation (M))GDVYFFD_ ENSG00000137628|ENST00000393743|DDX60 13.90604991867851 0.3810395177745597 2 [YT]YE{NN|[MP]|[D{I|L}]|[EV]}[TA]D{M(Oxidation (M))|F} 10 -1 + 62.408 0 0 5.0471 5.0471 85.052 0 0 0 9.388020924704819 12.500452295863553 9.388020924704819 6.505149978319906 0 1.9247425010840047 1.3010299956639813 0.6505149978319906 0 [YT]YE{NN|[MP]|[D{I|L}]|[EV]}[TA]D{M(Oxidation (M))|F};[YT]{[MG]|[TS]}{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YT]YE{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[HN]{[WT]|[RM]};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EAA[HN]{[WT]|[RM]} 5.0471;4.5211;4.2879;3.9917;1.6306;0.57516;0.23946;0.13478 -;-;-;-;-;-;-;- 229 NaN NaN 145641.1 NaN 12108 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15523 67.597 NaN 490470 35 0 54360 0.262 + 11396 IYPHGLVLL 9 85 512.8129480617564 1023.6113431903128 2 512.8131103515625 MULTI HCD FTMS 0 0 0 15519 178385.328125 0.5752716156779246 -3 0.083526611328125 4 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 36.466142684027034 0.08156716203802528 2 [Y{I|L}]T[R{M(Oxidation (M))|F}]V{I|L}{I|L} 8 4 + 55.45 0 0 5.4171 5.4171 90.762 0 0 0 23.804562952784064 16.40978057358332 16.40978057358332 23.804562952784064 0 1.305462187404089 2 0 0 [Y{I|L}]T[R{M(Oxidation (M))|F}]V{I|L}{I|L};[{I|L}V]{[QD]|[EN]|[WG]|[KD]|[RS]}[QP]V{I|L}{I|L};[YT]{I|L}[R{M(Oxidation (M))|F}]V{I|L}{I|L};[{I|L}V]{[QD]|[EN]|[WG]|[KD]|[RS]}[NP]{I|L}{I|L}{I|L} 5.4171;3.0916;2.4433;1.851 -;-;-;- 256 NaN NaN 162251.2 NaN 12109 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15524 67.601 NaN 487230 35 0 49301 0.261 + 20011 NYIGISLRI 9 60 524.8110609641684 1047.6075689951367 2 524.8113403320312 MULTI HCD FTMS 0 0 0 15519 221023 0.3456820003755577 10 -0.30202484130859375 5 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 71.70789743142352 0.008535567138151097 2 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 85.869 0 0 8.1967 8.1967 90.421 0 0 0 8.808422131034845 8.808422131034845 8.808422131034845 6.549471895720984 0 2.5356668758921828 2 0 1.066901560044258 + + [YN]{I|L}G{I|L}S{I|L}R{I|L};[YN]{I|L}G{I|L}R{[TV]|[{I|L}S]}{I|L};[YV]QG{I|L}S{I|L}R{I|L};[YV]QG{I|L}R{[TV]|[{I|L}S]}{I|L};[YV][AG]G{I|L}S{I|L}R{I|L};[YV][AG]G{I|L}R{[TV]|[{I|L}S]}{I|L};[YV]K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}R{I|L} 8.1967;7.5715;6.6253;6.0001;5.0914;4.4662;2.5315 +;-;-;-;-;-;- + 371 NaN NaN 156962.7 NaN 12110 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15525 67.604 NaN 561200 35 0 78042 0.261 -1 PYSINMNVF 9 90 550.7573043791946 1099.500055825189 2 550.7579345703125 MULTI HCD FTMS 0 0 0 15519 129754.421875 0.7054225557121692 -1 0.0261993408203125 6 Oxidation (M) _PYSINM(Oxidation (M))NVF_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 21.536976647645854 0.1742816388551942 2 VDT{M(Oxidation (M))|F} 4 -1 32.186 0 0 2.9273 0 0 619.2773518230391 0 619.2773518230391 0 23.233134811479204 0 0 0 0.7614393726401688 0 0.7059771852360797 0 VDT{M(Oxidation (M))|F} 2.9273 - 442 + NaN NaN 170985.8 NaN 12111 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15526 67.607 NaN 316120 35 0 55753 0.261 -1 TAMDVVYAL 9 58 499.74673630115075 997.4789196691015 2 499.7468566894531 MULTI HCD FTMS 0 0 0 15519 119562.2109375 0.1464974298177592 29 -0.79931640625 7 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 2 VYA{I|L} 4 -1 40.222 0 0 4.0323 0 0 533.2152968198477 0 533.2152968198477 0 20.044321917401078 0 0 0 1.305462187404089 0 0 0 VYA{I|L} 4.0323 + + 238 NaN NaN 138194.7 NaN 12112 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15527 67.611 NaN 999160 35 0 77577 0.261 + 15213 LNNITFNLTF 10 104 598.8188648316949 1195.6231767301897 2 598.8185424804688 MULTI HCD FTMS 0 0 0 15519 106018.6015625 0.1508952429013843 10 -0.30202484130859375 8 Unmodified _LNNITFNLTF_ REV__ENSG00000181143|ENST00000397910|MUC16 12.872603262515298 0.3907060291096084 2 S{M(Oxidation (M))|F}NE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 29.722 0 0 2.4859 0 0 293.17423280950777 0 293.17423280950777 0 -2.237154701873866 -2.237154701873866 0 0 0 0 0.805462187404089 0.3054621874040891 S{M(Oxidation (M))|F}NE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4859 - 2318 NaN NaN 232495.6 NaN 12113 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15528 67.614 NaN 437520 35 0 31673 0.261 + 5302 FFIAGRYEF 9 91 575.2896519485868 1148.5647509639734 2 575.2894897460938 MULTI HCD FTMS 0 0 0 15519 126802.5390625 0.5901561622350088 3 -0.098480224609375 9 Unmodified _FFIAGRYEF_ ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1 36.506200033944 0.08138327636155518 2 NA{I|L}E{M(Oxidation (M))|F} 5 6 50.573 0 0 4.4032 0 0 556.2714710919937 0 556.2714710919937 0 24.54721724641624 0 0 0 1.5 0 0 0 NA{I|L}E{M(Oxidation (M))|F} 4.4032 - 2322 NaN NaN 163080.4 NaN 12114 3412 15519 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15530 67.619 NaN 2050100 35 0 237240 0.327 + 13245 KYMDIEFDF 9 111 612.2680622783852 1222.5215716235703 2 612.2684326171875 MULTI HCD FTMS 0 0 0 15529 1694312.375 0.5545537397778119 11 -0.33135986328125 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 121.5340881639634 0.001118397630175091 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 82.359 0 0 6.7368 6.7368 85.778 0 0 0 1.3771436416588045 7.7435003003541425 1.3771436416588045 1.3771436416588045 0 2.6307196863200843 0 1.700061205686631 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}EV[Y{M(Oxidation (M))|F}]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}EEV[Y{M(Oxidation (M))|F}]K;[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K 6.7368;6.6242;6.2625;4.1196;2.3688;2.0262;1.8425;1.4734;1.2897;1.2838 +;-;-;-;-;-;-;-;-;- + 3811 NaN NaN 395586 NaN 12115 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15531 67.623 NaN 443220 35 0 62795 0.261 + 19373 NPEDFWEII 9 73 581.7737577473541 1161.5329625615082 2 581.775146484375 MULTI HCD FTMS 0 0 0 15529 194993.359375 0.15012282823333 11 -0.33135986328125 2 Unmodified _NPEDFWEII_ ENSG00000065613|ENST00000369755|SLK;nc|ENSG00000065613|Q9H2G2-2|SLK 19.256988751693697 0.19398022840297344 2 {I|L}{I|L} 2 7 17.703 0 0 1.5241 0 0 917.354295799025 0 917.354295799025 0 6.624087660102791 0 0 0 0.5 0 0 0 + {I|L}{I|L} 1.5241 + + 120 NaN NaN 166719.4 NaN 12116 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15532 67.627 NaN 423800 35 0 67950 0.261 + 15400 LPDHINIVL 9 60 517.3054319333767 1032.5963109335532 2 517.3057250976562 MULTI HCD FTMS 0 0 0 15529 227995.390625 0.34888757320164093 4 -0.11456298828125 3 Unmodified _LPDHINIVL_ ENSG00000120526|ENST00000239690|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1 21.536976647645854 0.1742816388551942 2 {I|L}N{I|L}V{I|L} 5 4 46.256 0 0 4.4796 0 0 462.2234059064469 0 462.2234059064469 0 41.19402840463316 0 0 0 0.75 0 0 0.3807196863200844 + {I|L}N{I|L}V{I|L} 4.4796 + + 185 NaN NaN 148871.8 NaN 12117 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15533 67.63 NaN 149290 35 0 16299 0.261 + 26259 SQPHCVFWDFS 11 47 451.52873541262045 1351.5643768380614 3 451.5289001464844 MULTI HCD FTMS 0 0 0 15529 43617.5234375 0.3759559345059234 3 -0.08835601806640625 4 Unmodified _SQPHCVFWDFS_ ENSG00000153292|ENST00000371253|ADGRF1 0.925533008218175 0.41486159313925264 2 {M(Oxidation (M))|F} 1 10 15.485 0 0 1.1457 0 0 1186.4855784755598 0 1186.4855784755598 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1457 + + 3 + NaN NaN 121797.4 NaN 12118 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15534 67.634 NaN 489410 35 0 55852 0.261 + -1 AYFDRCTQC 9 76 407.4990823032047 1219.4754175098142 3 407.49908447265625 MULTI HCD FTMS 0 0 0 15529 94499.796875 0.36641144834674955 -3 0.089111328125 5 2 Carbamidomethyl (C) _AYFDRC(Carbamidomethyl (C))TQC(Carbamidomethyl (C))_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 10.799506525563784 0.2670509983294061 2 AY 2 -1 40.445 0 0 3.3166 0 0 0 982.3527249436287 982.3527249436287 33.455612550363796 0 0 0 0 0.4247425010840047 2 0 0 AY 3.3166 + + 31 + NaN NaN 161852.2 NaN 12119 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15535 67.637 NaN 360980 35 0 41069 0.261 + 21161 PPPQNNLTLF 10 64 570.8057959229193 1139.5970389126385 2 571.32421875 MULTI HCD FTMS 0 0 0 15529 88732.765625 0.8129708640072918 -3 0.089111328125 6 Unmodified _PPPQNNLTLF_ REV__ENSG00000183486|ENST00000330714|MX2;REV__nc|ENSG00000183486|P20592-2|MX2 21.536976647645854 0.3096624038397699 2 {I|L}T{I|L}{M(Oxidation (M))|F} 4 -1 43.633 0 0 3.8288 0 0 647.3022328107437 0 647.3022328107437 0 32.8357551167653 0 0 0 0.7887254899964358 0 0.3807196863200844 0 {I|L}T{I|L}{M(Oxidation (M))|F} 3.8288 + + 69 NaN NaN 145383.9 NaN 12120 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15536 67.64 NaN 246170 35 0 29757 0.261 -1 LIDQELLSM 9 63 539.2783301189559 1076.5421073047116 2 539.27880859375 MULTI HCD FTMS 0 0 0 15529 87487.4765625 0.6960206285294696 -2 0.0591278076171875 7 Oxidation (M) _LIDQELLSM(Oxidation (M))_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 34.93206674587334 0.08860942999206235 2 {[QN]|[E{I|L}]|[KN]}{[QV]|[N{I|L}]|[RA]|[KV]}E{I|L}{I|L}S{M(Oxidation (M))|F} 9 -1 + 56.833 0 0 5.2792 5.2792 92.112 0 0 0 1.8842499412940583 46.655462488490684 1.8842499412940583 56.48062535455438 0 2 0 0 0.6989700043360187 {[QN]|[E{I|L}]|[KN]}{[QV]|[N{I|L}]|[RA]|[KV]}E{I|L}{I|L}S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QV]|[N{I|L}]|[RA]|[KV]}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L} 5.2792;0.032709 -;- 64 NaN NaN 122004.3 NaN 12121 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15537 67.644 NaN 194830 35 0 41667 0.261 + 21855 QAVQELVSL 9 45 493.77942806471356 985.5443031962271 2 493.7801208496094 MULTI HCD FTMS 0 0 0 15529 101578.3515625 0.680501137044626 -2 0.0591278076171875 8 Unmodified _QAVQELVSL_ ENSG00000108784|ENST00000225927|NAGLU 19.361941925380144 0.1930734562688509 2 {I|L}VS{I|L} 4 5 38.928 0 0 3.9499 0 0 555.2657948224625 0 555.2657948224625 0 35.43305028184122 0 0 0 1 0 0 0 + {I|L}VS{I|L} 3.9499 + + 24 NaN NaN 117906.6 NaN 12122 3413 15529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15539 67.648 NaN 2383400 35 0 269590 0.327 + 13345 KYMDVQFDF 9 96 596.770743768414 1191.526934603628 2 597.7952270507812 MULTI HCD FTMS 0 0 0 15538 55775.9453125 0.0858187682388237 13 -0.3704071044921875 1 Unmodified _KYMDVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 23.80106514851385 0.15472041655325736 2 [Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}VN{M(Oxidation (M))|F} 9 6 + 52.479 0 0 4.4044 4.4044 82.333 0 0 0 5.016894462103991 4.40491538680881 4.40491538680881 1.9188552623891297 0 0 1.154901959985743 0.841129063296272 0 [Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}VN{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}VN{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}VN{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}ENV{M(Oxidation (M))|F}N{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}VN{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGGV{M(Oxidation (M))|F}N{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}S{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}VGG{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}S{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{M(Oxidation (M))|F}]{I|L}ENV{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 4.4044;4.2433;3.9833;3.9633;3.8223;3.8022;3.7771;3.6316;3.6161;3.5422 -;-;-;-;-;-;-;-;-;- 6824 NaN NaN 447817.8 NaN 12123 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15540 67.653 NaN 1096500 35 0 233550 0.261 + 11069 IYGLLKNPF 9 90 532.8106547496982 NaN 0 532.8107299804688 PEAK HCD FTMS 0 0 0 15538 193444.390625 0.6330535554457438 -1 0.02947998046875 2 Unmodified _IYGLLKNPF_ ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF;nc|ENSG00000136758|Q96TA2-3|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant 170.55093314911917 9.492105184333237E-27 2 YG{I|L}{I|L}KNP 7 2 71.138 0 0 6.6883 0 0 113.08574639790704 162.0560244195922 275.14177081749926 0 0 0 0 0 3.0356668758921828 0 0 1.1976212463643423 + YG{I|L}{I|L}KNP 6.6883 + + 639 + NaN NaN 273013.8 NaN 12124 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15541 67.656 NaN 438940 35 0 41624 0.261 + 12764 KYDEIFYNL 9 62 602.7977562185981 1203.5809595039962 2 602.7977905273438 MULTI HCD FTMS 0 0 0 15538 113644.0546875 0.014212335863319825 36 -0.9660873413085938 3 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 33.4449034751529 0.0954363425218424 2 WWY{I|L}{M(Oxidation (M))|F}YN{I|L} 8 4 WW + + 48.562 2.2185 0.5961 4.0348 4.0348 61.01 0 0 0 0 35.118252904652465 0 0 0 1.9802046884880937 0 0 0.75 WWY{I|L}{M(Oxidation (M))|F}YN{I|L} 4.0348 - 971 + NaN NaN 171694.2 NaN 12125 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15542 67.66 NaN 246940 35 0 15592 0.261 + 7204 FSNGPCRGSKF 11 78 600.2839785149785 1198.5534040967568 2 600.2835693359375 MULTI HCD FTMS 0 0 0 15538 159071.6875 0.7234303569375451 -2 0.062408447265625 4 Unmodified _FSNGPCRGSKF_ REV__ENSG00000178297|ENST00000696167|TMPRSS9;REV__ENST00000395264.3_1_19:2389783-2414036:+|nuORF;REV__nc|ENSG00000178297|Q7Z410|TMPRSS9;REV__TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant 23.789781309258295 0.24980126723476595 2 AY{I|L}E{[YC]|[HE]}Y 7 -1 54.09 0 0 4.5129 0 0 0 290.15033899478755 290.15033899478755 26.878465002703948 0 0 0 0 1.1237125054200234 2 0.28872548999643577 0 AY{I|L}E{[YC]|[HE]}Y 4.5129 - 346 + NaN NaN 127593.1 NaN 12126 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15543 67.663 NaN 288970 35 0 15321 0.261 + 33412 YGRIEILSGF 10 64 577.813821259701 1153.6130895862018 2 577.8147583007812 MULTI HCD FTMS 0 0 0 15538 71273.140625 0.32805971164715 4 -0.118011474609375 5 Unmodified _YGRIEILSGF_ ENSG00000145740|ENST00000396591|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;nc|ENSG00000145740|Q8TAD4-2|SLC30A5 19.361941925380144 0.3300069447713393 2 [HA]T{I|L}{I|L}[DV]{I|L}SW 10 8 + 45.891 0 0 3.978 3.978 82.245 0 0 0 28.098943791441965 8.494850021680094 8.494850021680094 3.0102999566398125 0 1.3494850021680094 0 0 0 [HA]T{I|L}{I|L}[DV]{I|L}SW;[HA]T{I|L}{I|L}EVVSW 3.978;3.717 -;- 112 + NaN NaN 138616 NaN 12127 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15544 67.666 NaN 210490 35 0 15589 0.261 + 20180 NYLDQIAKF 9 67 556.2923189036628 1110.5700848741255 2 556.2922973632812 MULTI HCD FTMS 0 0 0 15538 102645.6796875 0.9604038936181022 1 -0.03607177734375 6 Unmodified _NYLDQIAKF_ ENSG00000012817|ENST00000317961|KDM5D;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 40.23920728925047 0.06424668180817725 2 [YN]{I|L} 3 6 37.447 0 0 3.3719 0 0 0 717.3565283157849 717.3565283157849 0.7648373010427179 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.3719 + + 66 NaN NaN 126518.1 NaN 12128 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15545 67.67 NaN 179050 35 0 35645 0.261 + 26107 SPISAQDLL 9 45 472.25819371884654 942.5018345044931 2 472.2582702636719 MULTI HCD FTMS 0 0 0 15538 73468.8671875 0.5807152097864313 2 -0.05887603759765625 7 Unmodified _SPISAQDLL_ ENSG00000170265|ENST00000610704|ZNF282;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant 20.41453444215458 0.18397929046831515 2 QD{I|L}{I|L} 4 5 33.972 0 0 3.6045 0 0 455.2397633283219 0 455.2397633283219 0 7.786596949921218 0 0 0 0.4247425010840047 0 0 0.3807196863200844 + QD{I|L}{I|L} 3.6045 + + 36 NaN NaN 114391 NaN 12129 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15546 67.673 NaN 367800 35 0 22795 0.261 + 25832 SLSTFQQMW 9 89 572.2604388100789 1142.5063246869577 2 572.2609252929688 MULTI HCD FTMS 0 0 0 15538 40735.30078125 0.3626977967548676 4 -0.118011474609375 8 Oxidation (M) _SLSTFQQM(Oxidation (M))W_ ENSG00000075624|ENST00000646664|ACTB;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP 63.960520009940105 0.0120409805053046 2 {[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}W 9 0 + 64.486 0 0 5.6443 5.6443 87.95 0 0 0 45.814243664528576 12.403405327429411 12.403405327429411 9.208187539523749 0 1.6549471895720984 0 0 0.7302046884880937 + + {[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}W;{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}[AG]Q{M(Oxidation (M))|F}W;{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}[{I|L}A]{[DA]|[EG]};{[TV]|[{I|L}S]}ST{M(Oxidation (M))|F}[AG][AG]{M(Oxidation (M))|F}W;{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ[{I|L}A]A{[{M(Oxidation (M))|F}D]|MM};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}Q[AG]{M(Oxidation (M))|F}[{I|L}A]{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QQ[{I|L}A]{M(Oxidation (M))|F}{[DA]|[EG]};[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QQ{M(Oxidation (M))|F}{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[AG]Q{M(Oxidation (M))|F}[{I|L}A]{[DA]|[EG]} 5.6443;4.8383;4.571;4.049;3.3971;3.3181;3.2468;3.1005;3.0684;2.9794 +;-;-;-;-;-;-;-;-;- + 694 + NaN NaN 138470.4 NaN 12130 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15547 67.676 NaN 466450 35 0 48198 0.261 -1 KYMDVQFDF 9 69 604.7681072670384 1207.5216616008768 2 604.7683715820312 MULTI HCD FTMS 0 0 0 15538 79260.015625 0.023138585495866927 94 -2.4466018676757812 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 38.61474834105838 0.07170385841135779 2 Q{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 53.276 0 0 4.412 0 0 310.13170058418126 0 310.13170058418126 0 36.82212897006188 0 0 0 1.8494850021680094 0 0 0.6549471895720984 Q{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.412 - 481 NaN NaN 165043.5 NaN 12131 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15548 67.68 NaN 262430 35 0 28310 0.261 + 11168 IYIVGGCLHEL 11 65 608.8226906770728 1215.6308284209456 2 608.8238525390625 MULTI HCD FTMS 0 0 0 15538 48849.0546875 0.48158799876242553 4 -0.118011474609375 10 Unmodified _IYIVGGCLHEL_ ENSG00000087448|ENST00000381271|KLHL42 21.799462835604743 0.267142977351036 2 [Y{I|L}]{I|L}VG 5 6 58.456 0 0 4.8087 0 0 0 667.2880823064447 667.2880823064447 52.971062485323515 0 0 0 0 1.9247425010840047 1.6989700043360187 0 0 + [Y{I|L}]{I|L}VG 4.8087 + + 96 + NaN NaN 132258.4 NaN 12132 3414 15538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15550 67.684 NaN 20412000 35 0 3008800 0.327 + 1166 AYLESFYKF 9 99 584.2894496602338 1166.5643463872675 2 584.29052734375 MULTI HCD FTMS 0 0 0 15549 21701476 1 0 0 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 2 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 129.61 0 0 11.11 11.11 95.615 0 0 0 61.5815315012393 14.973024840566467 14.973024840566467 10.555847141874892 0 3.2302046884880937 2 0.9916440611282626 0.3054621874040891 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYS{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 11.11;10.205;9.6744;9.5224;9.4832;9.0681;9.0546;8.9987;8.9916;8.6429 +;+;-;-;-;-;-;-;-;- + 10273 + NaN NaN 783168.6 NaN 12133 3415 15549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15551 67.689 NaN 1385100 35 0 224270 0.261 + 33366 YGHLELIQL 9 98 543.3029854467579 1084.5914179603158 2 543.3033447265625 MULTI HCD FTMS 0 0 0 15549 1426716.25 0.8414368578261708 2 -0.04901123046875 2 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 88.95385435242217 0.004553379958619559 2 {I|L}DE{I|L}{I|L}Q{I|L} 7 4 68.58 0 0 6.3231 0 0 242.12634474922032 0 242.12634474922032 0 53.87009080640347 0 0 0 2.055462187404089 0 0.566901560044258 0.3807196863200844 {I|L}DE{I|L}{I|L}Q{I|L} 6.3231 - 1676 NaN NaN 294628.2 NaN 12134 3415 15549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15552 67.692 NaN 785280 35 0 180270 0.261 + 10787 ISPGRYFLL 9 68 533.3081646102079 1064.6017762872157 2 533.309814453125 MULTI HCD FTMS 0 0 0 15549 375021.21875 0.3043378419447954 13 -0.35050201416015625 3 Unmodified _ISPGRYFLL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 27.628801355627647 0.12213550946336599 2 {I|L}SP[HA]{I|L}{I|L}AP{M(Oxidation (M))|F} 10 7 + 66.592 0 0 6.2551 6.2551 93.943 0 0 0 39.513356515246514 13.037275116073346 13.037275116073346 66.59170039340886 0 0.4247425010840047 1.5228787452803376 0.5 0 {I|L}SP[HA]{I|L}{I|L}AP{M(Oxidation (M))|F} 6.2551 - 781 + NaN NaN 218768.8 NaN 12135 3415 15549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15553 67.696 NaN 554450 35 0 36496 0.261 + 3891 EPPFPDLYGF 10 93 591.2791035558345 1180.5436541784688 2 591.279296875 MULTI HCD FTMS 0 0 0 15549 230370.828125 0.726669060025903 -2 0.0655517578125 4 Unmodified _EPPFPDLYGF_ REV__ENSG00000018236|ENST00000551295|CNTN1;REV__nc|ENSG00000018236|Q12860-2|CNTN1;REV__nc|ENSG00000018236|Q12860-3|CNTN1 30.636539890814138 0.2266618088935899 2 AY{I|L}E[DV]E{I|L} 8 -1 54.408 0 0 4.6087 0 0 0 245.05657373599846 245.05657373599846 18.1213749954943 0 0 0 0 2.5356668758921828 1.3979400086720375 0 0 AY{I|L}E[DV]E{I|L} 4.6087 - 608 + NaN NaN 175744.7 NaN 12136 3415 15549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15554 67.699 NaN 437850 35 0 46776 0.261 + 4958 FASSFKIVL 9 70 506.29760524226754 1010.5806575513351 2 506.2975769042969 MULTI HCD FTMS 0 0 0 15549 275666.5 0.7036662832980676 -1 0.03607177734375 5 Unmodified _FASSFKIVL_ ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 63.960520009940105 0.0120409805053046 2 {M(Oxidation (M))|F}SSS{I|L} 5 5 53.025 0 0 5.247 0 0 471.3407459943375 0 471.3407459943375 0 37.10868182256309 0 0 0 1.4247425010840047 0 0.805462187404089 0 {M(Oxidation (M))|F}SSS{I|L} 5.247 - 120 NaN NaN 169329.9 NaN 12137 3415 15549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15555 67.702 NaN 390850 35 0 51532 0.261 + 24146 RYDNVTILF 9 53 570.8057959229193 1139.5970389126385 2 570.8060913085938 MULTI HCD FTMS 0 0 0 15549 151629.84375 0.9411061328988711 -1 0.03607177734375 6 Unmodified _RYDNVTILF_ ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1 21.536976647645854 0.1742816388551942 2 T{I|L}{I|L}{M(Oxidation (M))|F} 4 5 44.24 0 0 3.8821 0 0 647.3021107404312 0 647.3021107404312 0 36.28144697160131 0 0 0 0.805462187404089 0 0.4247425010840047 0 + T{I|L}{I|L}{M(Oxidation (M))|F} 3.8821 + + 61 NaN NaN 169944.5 NaN 12138 3415 15549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15557 67.707 NaN 1348100 35 0 136830 0.327 + 18731 MYTKLFVGF 9 103 561.2885619358652 1120.5625709385304 2 561.2888793945312 MULTI HCD FTMS 0 0 0 15556 733493.75 0.7556694363621238 1 -0.02620697021484375 1 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 142.0795815696625 1.719916958814042E-05 2 [YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 2 + 101.2 0 0 9.0315 9.0315 89.645 0 0 0 1.9234874126103563 16.478174818886373 1.9234874126103563 1.9234874126103563 0 2.8807196863200843 1.2218487496163564 2.510574239612792 0 [YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};{M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}K{I|L}G[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}G[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};{M(Oxidation (M))|F}[K{I|L}][YT]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[H{I|L}]{I|L}[RP][HM] 9.0315;8.8598;8.6705;5.8341;5.6624;3.6;0.27604 -;+;+;-;-;-;- + 1043 NaN NaN 299056 NaN 12139 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15558 67.712 NaN 885610 35 0 72270 0.261 + 13126 KYLINLETL 9 101 553.8262055189011 1105.6378581046022 2 553.8263549804688 MULTI HCD FTMS 0 0 0 15556 743968.6875 1 0 0 2 Unmodified _KYLINLETL_ ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant 145.12958885780327 1.3974915176135797E-05 2 [Y{I|L}]K{I|L}N{I|L}ET{I|L} 9 2 + 93.389 0 0 8.4466 8.4466 88.799 0 0 0 1.6959252276409842 13.959186937069177 1.6959252276409842 1.6959252276409842 0 2.2302046884880937 0.7958800173440752 0.3494850021680094 1.4049471895720984 [Y{I|L}]K{I|L}N{I|L}ET{I|L};[YK]{I|L}{I|L}N{I|L}ET{I|L};[Y{I|L}]K{I|L}GG{I|L}ET{I|L};[YK]{I|L}{I|L}GG{I|L}ET{I|L};[Y{I|L}]{I|L}KN{I|L}ET{I|L};[Y{I|L}]{I|L}KGG{I|L}ET{I|L};[{I|L}T]E{I|L}N{I|L}{I|L}YK;[{I|L}T]E{I|L}N{I|L}YK{I|L};{[QN]|[E{I|L}]|[KN]}T{I|L}N{I|L}{I|L}YK;{[QN]|[E{I|L}]|[KN]}T{I|L}N{I|L}YK{I|L} 8.4466;8.2932;7.6137;7.4603;7.2981;6.4652;5.9684;5.7919;5.7486;5.5721 -;+;-;-;-;-;-;-;-;- + 2827 NaN NaN 225157.5 NaN 12140 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15559 67.715 NaN 596740 35 0 40114 0.261 + 1778 CLSLSSHLSW 10 87 566.7768371423638 1131.5391213515275 2 567.27880859375 MULTI HCD FTMS 0 0 0 15556 323866.53125 0.924488937554777 1 -0.02620697021484375 3 Unmodified _CLSLSSHLSW_ REV__ENST00000403496.6_1_1:32705729-32705810:-|nuORF 13.90604991867851 0.3810395177745597 2 {M(Oxidation (M))|F}YPC(Carbamidomethyl (C))W 5 -1 33.443 0 0 2.9556 0 0 360.23652846504064 0 360.23652846504064 0 -4.313929935651672 -4.313929935651672 0 0 0 0 0 0 {M(Oxidation (M))|F}YPC(Carbamidomethyl (C))W 2.9556 - 404 NaN NaN 184377.6 NaN 12141 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15560 67.719 NaN 177210 35 0 39289 0.262 + 26108 SPISAQDLL 9 50 472.25819371884654 942.5018345044931 2 472.75030517578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SPISAQDLL_ ENSG00000170265|ENST00000610704|ZNF282;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant 31.26834338654808 0.10542797264966089 2 QD{I|L}{I|L} 4 5 38.136 0 0 4.0463 0 0 455.23741347480626 0 455.23741347480626 0 20.701075205960887 0 0 0 0.9247425010840047 0 0.3054621874040891 0.3807196863200844 + QD{I|L}{I|L} 4.0463 + + 48 NaN NaN 136790.7 NaN 12142 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15561 67.722 NaN 316640 35 0 49112 0.261 + -1 YYLDNMNNTG 10 70 610.7455714521399 1219.4765899710796 2 610.7459106445312 MULTI HCD FTMS 0 0 0 15556 110179.1640625 0.9433167798946488 1 -0.02620697021484375 5 Oxidation (M) _YYLDNM(Oxidation (M))NNTG_ REV__tr|U7SP46|U7SP46_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01722PE=3SV=1 4.3292370932331545 0.45238836448149167 2 YY{I|L} 3 -1 24.181 0 0 1.9829 0 0 0 777.2419457662546 777.2419457662546 8.423552944845483 0 0 0 0 0 2 0 0 YY{I|L} 1.9829 + + 22 NaN NaN 142263.2 NaN 12143 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15562 67.725 NaN 404130 35 0 74182 0.264 + 12036 KIEFICGDFLL 11 55 433.2336849029426 1296.679225309028 3 433.23358154296875 MULTI HCD FTMS 0 0 0 15556 139149.828125 1 0 0 6 Unmodified _KIEFICGDFLL_ ENSG00000137574|ENST00000260129|TGS1;LYN-TGS1|1|fusion;LYN-TGS1|2|fusion 5.868138319507137 0.39318500527288264 2 {I|L}{I|L} 2 9 29.776 0 0 2.2964 0 0 1052.4990346154023 0 1052.4990346154023 0 15.796896906561031 0 0 0 0.8807196863200843 0 0 0 + {I|L}{I|L} 2.2964 + + 8 NaN NaN 164599.8 NaN 12144 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15563 67.729 NaN 107150 35 0 10484 0.261 + 13058 KYLDEFLLNKI 11 55 465.9341898189306 1394.7807400569918 3 466.2687683105469 MULTI HCD FTMS 0 0 0 15556 13309.919921875 0.14646132344860172 1 -0.02620697021484375 7 Unmodified _KYLDEFLLNKI_ ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF;nc|ENSG00000099331|Q13459-2|MYO9B 6.65985005553511 0.38971282654729256 2 {I|L}{I|L} 2 9 20.969 0 0 1.5034 0 0 795.3802406446856 370.20990930728755 1165.5901499519732 0 0 0 0 0 1 0 0 0 + {I|L}{I|L} 1.5034 + + 10 + NaN NaN 100305.9 NaN 12145 3416 15556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15565 67.733 NaN 542450 35 0 32140 0.327 -1 0 94 621.092970044817 3100.4284678910844 5 621.274169921875 MULTI HCD FTMS 0 0 0 15564 16766.89453125 0.5911690412293347 1 -0.032928466796875 1 NaN NaN 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 8 -1 44.954 0 0 1.4499 0 0 1923.8946398273565 0 1923.8946398273565 0 24.31408993745343 0 0 0 0 0 0 0.3807196863200844 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.4499 - 1195 + NaN NaN 169446.9 NaN 12146 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15566 67.738 NaN 482230 35 0 70138 0.262 + 11397 IYPHGLVLL 9 75 512.8129480617564 1023.6113431903128 2 512.8133544921875 MULTI HCD FTMS 0 0 0 15564 156357.234375 0.5042336148789601 2 -0.065704345703125 2 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 45.7499826716795 0.03894913563566938 2 [Y{I|L}]T[R{M(Oxidation (M))|F}]V{I|L}{I|L} 8 4 + 54.742 0 0 5.3479 5.3479 92.164 0 0 0 17.306679035102164 18.399480616943507 17.306679035102164 54.741691672186334 0 1.3807196863200843 2 0 0 [Y{I|L}]T[R{M(Oxidation (M))|F}]V{I|L}{I|L} 5.3479 - 168 NaN NaN 178353.6 NaN 12147 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15567 67.742 NaN 446210 35 0 100830 0.261 -1 LRHLNMQCIL 10 46 433.2336849029426 1296.679225309028 3 433.2337951660156 MULTI HCD FTMS 0 0 0 15564 29417.302734375 0.2114073954007983 1 -0.032928466796875 3 Carbamidomethyl (C) _LRHLNMQC(Carbamidomethyl (C))IL_ ENST00000466611.1_1_7:4266967-4305013:+|nuORF 6.1918466704503565 0.44252927588099017 2 {I|L}{I|L} 2 -1 29.464 0 0 2.2723 0 0 1052.4991351191372 0 1052.4991351191372 0 25.48455006504028 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L} 2.2723 + + 10 NaN NaN 154946.8 NaN 12148 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15568 67.745 NaN 454240 35 0 61907 0.261 + -1 YYLDNMNNTG 10 75 610.7455714521399 1219.4765899710796 2 610.7440795898438 MULTI HCD FTMS 0 0 0 15564 86591.171875 0.7413643597267974 2 -0.065704345703125 4 Oxidation (M) _YYLDNM(Oxidation (M))NNTG_ REV__tr|U7SP46|U7SP46_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01722PE=3SV=1 4.3292370932331545 0.45238836448149167 2 YY{I|L} 3 -1 22.192 0 0 1.8198 0 0 0 777.2484154928171 777.2484154928171 15.20181229336984 0 0 0 0 0 2 0 0 YY{I|L} 1.8198 + + 86 NaN NaN 173848.6 NaN 12149 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15569 67.748 NaN 169670 35 0 11540 0.261 + 2811 DYIRPRFF 8 55 557.2943529119724 NaN 0 557.2830810546875 PEAK HCD FTMS 0 0 0 15564 11792.2060546875 0.5384370652729061 -1 0.02620697021484375 5 Unmodified _DYIRPRFF_ ENSG00000214511|ENST00000695931|HIGD1C 9.347437153973935 0.38822285293237185 2 {M(Oxidation (M))|F}D 2 7 11.555 0 0 1.0385 0 0 574.371285314376 273.0876864068969 847.458971721273 0 0 0 0 0 0 0 0.9247425010840047 0 {M(Oxidation (M))|F}D 1.0385 - 32 + NaN NaN 115094 NaN 12150 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15570 67.751 NaN 211200 35 0 14341 0.261 + -1 ISRCTDLSFG 10 65 578.2774953408924 1154.5404377485847 2 578.2783813476562 MULTI HCD FTMS 0 0 0 15564 29826.25390625 0.5280644511419488 -3 0.0850830078125 6 Carbamidomethyl (C) _ISRC(Carbamidomethyl (C))TDLSFG_ REV__ENSG00000256812|ENST00000457326|CAPNS2 9.38312468134398 0.42334543440173333 2 D{I|L}{I|L} 3 -1 19.922 0 0 1.7255 0 0 795.33305556465 0 795.33305556465 0 2.7646180417324437 0 0 0 0 0 0 0 D{I|L}{I|L} 1.7255 - 133 NaN NaN 129686.5 NaN 12151 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15571 67.755 NaN 85886 35 0 10105 0.262 -1 IPCVLMAF 8 33 483.74141092247845 NaN 0 483.7412414550781 PEAK HCD FTMS 0 0 0 15564 6280.46435546875 0.13701737517544765 1 -0.032928466796875 7 Carbamidomethyl (C),Oxidation (M) _IPC(Carbamidomethyl (C))VLM(Oxidation (M))AF_ ENSG00000184575|ENST00000332707|XPOT 6.354104778181461 0.38822285293237185 2 P 1 -1 6.9897 0 0 0.72397 0 0 113.08499734591005 752.3075567671111 865.3925541130212 0 0 0 0 0 0 0 0 0 P 0.72397 + + 28 + NaN NaN 101258.4 NaN 12152 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15572 67.758 NaN 242990 35 0 27559 0.261 + 7949 GEAAWNNMQVF 11 64 633.7837522968623 NaN 0 633.7828979492188 PEAK HCD FTMS 0 0 0 15564 47393.6328125 0.6188932043391189 7 -0.216796875 8 Unmodified _GEAAWNNMQVF_ ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000164574|Q86SR1-4|GALNT10 10.799506525563784 0.3114850535502259 2 YWH 3 10 18.672 0 0 1.4754 0 0 165.0800437103465 611.2500094049436 776.3300531152902 0 0 0 0 0 0.8494850021680094 0 0 0 YWH 1.4754 - 51 + NaN NaN 138348.5 NaN 12153 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15573 67.761 NaN 109920 35 0 13098 0.264 + -1 CMMPSGPD 8 50 455.6602783203125 NaN 0 455.6602783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))MM(Oxidation (M))PSGPD_ REV__ENSG00000103023|ENST00000567164|PRSS54 2.577480529830294 0.38822285293237185 2 V 1 -1 3.0989 0 0 0.3408 0 0 164.93008378730627 642.2996309869749 807.2297147742811 0 0 0 0 0 0 0 0 0 V 0.3408 - 1 + NaN NaN 107772 NaN 12154 3417 15564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15575 67.766 NaN 1468800 35 0 156230 0.327 + 13246 KYMDIEFDF 9 91 612.2680622783852 1222.5215716235703 2 612.2682495117188 MULTI HCD FTMS 0 0 0 15574 1051209.25 0.3440640754787197 16 -0.4354705810546875 1 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 90.13494162714682 0.004522430935000059 2 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F} 9 5 + 75.978 0 0 6.2149 6.2149 85.643 0 0 0 3.089023095914186 10.52378753635658 3.089023095914186 3.089023095914186 0 1.8252574989159953 1.3979400086720375 1.1861818737241734 0 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;[{M(Oxidation (M))|F}E]D{I|L}[Y{M(Oxidation (M))|F}]KD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}[YT]{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}[Y{M(Oxidation (M))|F}]DK{M(Oxidation (M))|F} 6.2149;5.9622;5.763;3.3702;2.3975;1.8693;1.7602;1.4689;1.4509;1.3519 -;+;-;-;-;-;-;-;-;- + 2227 NaN NaN 314619.8 NaN 12155 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15576 67.771 NaN 888380 35 0 256720 0.261 + 10075 IFFENHPYF 9 67 607.2872616918412 1212.5599704504823 2 607.287353515625 MULTI HCD FTMS 0 0 0 15574 725190.9375 0.3062664462691945 -4 0.118011474609375 2 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 106.94017166704063 0.003441928997083001 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F} 9 0 + 86.833 0 0 7.1611 7.1611 92.248 0 0 0 68.87394998465425 9.889917747712644 9.889917747712644 12.781512503836439 0 2.9489700043360187 0 0.3252574989159953 0.4247425010840047 + + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}NEHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGGHPY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}ENHPY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{I|L}]NHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}GGEHPY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}EGGHPY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{I|L}]GGHPY{M(Oxidation (M))|F} 7.1611;6.107;6.0514;5.4859;5.0314;4.9973;3.7483;3.2938 +;-;-;-;-;-;-;- + 502 + NaN NaN 226299.6 NaN 12156 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15577 67.774 NaN 607620 35 0 183970 0.261 + 1320 AYPAIRYLL 9 57 540.3159780691352 1078.6174032050703 2 540.3163452148438 MULTI HCD FTMS 0 0 0 15574 236597.390625 0.7337730444173485 -4 0.118011474609375 3 Unmodified _AYPAIRYLL_ ENSG00000132676|ENST00000368336|DAP3;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3 54.773552608820026 0.024892918755467567 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L} 9 0 + 55.371 0 0 5.1335 5.1335 87.148 0 0 0 10.457574905606748 30.58931538997598 10.457574905606748 9.208187539523749 0 1.9049471895720984 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VG]Y{I|L}{I|L} 5.1335;4.2798 +;- + 129 NaN NaN 196190.5 NaN 12157 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15578 67.778 NaN 495990 35 0 65788 0.261 -1 PYSINMNVF 9 91 550.7573043791946 1099.500055825189 2 550.7577514648438 MULTI HCD FTMS 0 0 0 15574 146278.09375 0.7952551076620431 5 -0.14443206787109375 4 Oxidation (M) _PYSINM(Oxidation (M))NVF_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 21.536976647645854 0.1742816388551942 2 NV{M(Oxidation (M))|F} 3 -1 27.92 0 0 2.5393 0 0 721.3119374005875 0 721.3119374005875 0 14.424712680444358 0 0 0 0.8494850021680094 0 0 0.2742275032520141 NV{M(Oxidation (M))|F} 2.5393 + + 233 NaN NaN 182155.4 NaN 12158 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15579 67.781 NaN 349660 35 0 34911 0.261 + 20012 NYIGISLRI 9 66 524.8110609641684 1047.6075689951367 2 525.313232421875 MULTI HCD FTMS 0 0 0 15574 14905.6826171875 0.046125636874721196 15 -0.402618408203125 5 Unmodified _NYIGISLRI_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 47.7319792270244 0.034743597693959835 2 [YN]{I|L}G{I|L}S{I|L}R{I|L} 9 0 + 60.632 0 0 5.7876 5.7876 85.089 0 0 0 0.5546218740408904 0.5546218740408904 0.5546218740408904 3.4691001300805624 0 2.385151878060192 1.6989700043360187 0.25 0 + + [YN]{I|L}G{I|L}S{I|L}R{I|L};[YN]{I|L}G{I|L}R{[TV]|[{I|L}S]}{I|L};[Y{I|L}]NG{I|L}S{I|L}R{I|L};[Y{I|L}]NG{I|L}R{[TV]|[{I|L}S]}{I|L};[Y{I|L}]GGG{I|L}S{I|L}R{I|L};[Y{I|L}]GGG{I|L}R{[TV]|[{I|L}S]}{I|L} 5.7876;5.4565;4.3465;4.0683;3.4675;3.1893 +;-;-;-;-;- + 325 + NaN NaN 145619.9 NaN 12159 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15580 67.784 NaN 118380 35 0 10660 0.261 + 33015 YCAMRDEINEL 11 48 452.8703182296472 NaN 0 453.25213623046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YCAMRDEINEL_ ENSG00000163492|ENST00000443758|CCDC141;nc|ENSG00000163492|Q6ZP82-1|CCDC141 1.4551175022131473 0.3379923941668102 2 W 1 11 6.9897 0 0 0.77343 0 0 113.42786990243833 601.2085665338499 714.6364364362882 0 0 0 0 0 0 0 0 0 W 0.77343 - 2 + NaN NaN 107870.3 NaN 12160 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15581 67.788 NaN 216610 35 0 22380 0.261 + 9608 HSNASQIMSYF 11 59 642.788670876087 1283.562788818974 2 642.7877197265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HSNASQIMSYF_ REV__ENSG00000165675|ENST00000394363|ENOX2;REV__nc|ENSG00000165675|Q16206|ENOX2 6.630372943996041 0.3898421031449734 2 MM{[MS]|[{M(Oxidation (M))|F}A]}Y{M(Oxidation (M))|F} 6 -1 29.698 0 0 2.3137 0 0 475.292772361525 0 475.292772361525 0 25.718421963928435 0 0 0 0.8807196863200843 0 0 0 MM{[MS]|[{M(Oxidation (M))|F}A]}Y{M(Oxidation (M))|F} 2.3137 - 27 NaN NaN 120236.1 NaN 12161 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15582 67.791 NaN 99793 35 0 11508 0.264 -1 MPDVDFNL 8 36 483.7155308866356 965.4165088400712 2 483.7156066894531 MULTI HCD FTMS 0 0 0 15574 31617.484375 0.334956620338471 -17 0.49990081787109375 8 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 11.640296217721598 0.50814828952472 2 {M(Oxidation (M))|F}N{I|L} 3 -1 24.425 0 0 2.53 0 0 573.2112233114863 0 573.2112233114863 0 9.820618910682484 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}N{I|L} 2.53 + + 37 NaN NaN 94407.7 NaN 12162 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15583 67.794 NaN 71474 35 0 9632.5 0.261 + 32538 WHPPHQGL 8 38 486.2470820875893 NaN 0 486.24676513671875 PEAK HCD FTMS 0 0 0 15574 30053.6875 0.4705175535061818 -6 0.180419921875 9 Unmodified _WHPPHQGL_ ENSG00000138756|ENST00000502613|BMP2K 9.347437153973935 0.38822285293237185 2 GV 2 7 15.217 0 0 1.5679 0 0 131.09675098982865 680.2746676080686 811.3714185978972 0 0 0 0 0 0.4247425010840047 0 0 0 GV 1.5679 - 4 + NaN NaN 109801.8 NaN 12163 3418 15574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15585 67.799 NaN 3582000 35 0 449720 0.327 + 7685 FYLEGGFSKF 10 104 597.7949633388251 1193.5753737444502 2 597.7953491210938 MULTI HCD FTMS 0 0 0 15584 2696160.75 0.7477445240200686 1 -0.026214599609375 1 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 151.47984550603806 1.6769878081458435E-07 2 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 91.18 0 0 7.6392 7.6392 87.57 0 0 0 11.509461452434238 1.7140151069450837 1.7140151069450837 1.7140151069450837 0 3.048455006504028 0 1.839136830878453 0.3252574989159953 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 7.6392;7.4956;7.4764;7.3909;7.3718;6.8677;6.4564;6.3517;6.3495;6.2448 -;-;-;-;+;+;-;-;-;- + 9223 + NaN NaN 546763.6 NaN 12164 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15586 67.804 NaN 1017800 35 0 52544 0.261 + 6352 FPFYYEIKM 9 81 627.298453891388 1252.582354849576 2 627.2989501953125 MULTI HCD FTMS 0 0 0 15584 687426.8125 0.7274414575457666 -5 0.150787353515625 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 72.533 0 0 5.7906 5.7906 85.048 0 0 0 8.001896823007826 5.55970632012567 5.55970632012567 3.4066584827414914 0 2.5682503180159344 1.6989700043360187 0.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYYP{M(Oxidation (M))|F}E;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[VP]NE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]P{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKYP{M(Oxidation (M))|F}E;{M(Oxidation (M))|F}{M(Oxidation (M))|F}PYYE{I|L}K{M(Oxidation (M))|F} 5.7906;5.5187;5.3468;5.228;5.1518;4.7835;4.6823;4.6064;4.5635;4.2347 +;-;-;-;+;-;-;-;-;- + 3264 NaN NaN 245425.7 NaN 12165 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15587 67.807 NaN 1270700 35 0 379430 0.261 + 24615 RYLPTGSFPF 10 72 592.8085510866069 1183.6025492400138 2 592.8085327148438 MULTI HCD FTMS 0 0 0 15584 707545.625 0.11069636115632768 -5 0.150787353515625 3 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 71.70789743142352 0.01556163018108538 2 [YR]{I|L}[TP]GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 77.357 0 0 6.5357 6.5357 93.126 0 0 0 4.259687322722812 66.38743756437101 4.259687322722812 29.165090889956673 0 2.610924374808178 0 1.1861818737241734 0 + + [YR]{I|L}[TP]GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}[TP][YQ]P{M(Oxidation (M))|F};[YR]{I|L}[TP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YR]{I|L}[TP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 6.5357;4.0716;3.9697;1.4877;1.2825;0.26953 +;-;-;-;-;- + 190 NaN NaN 295743.7 NaN 12166 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15588 67.811 NaN 173340 35 0 24889 0.261 + 33054 YDEHFPEII 9 50 581.7737577473541 1161.5329625615082 2 581.7752075195312 MULTI HCD FTMS 0 0 0 15584 77043.90625 0.059315092275272666 17 -0.4552154541015625 4 Unmodified _YDEHFPEII_ ENSG00000154545|ENST00000471932|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENST00000481096.6_1_X:51808851-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4 7.910154910731844 0.2910521888787154 2 {I|L}{M(Oxidation (M))|F} 2 8 10.969 0 0 0.94436 0 0 149.1035610177508 749.2539766900999 898.3575377078507 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.94436 - 8 + NaN NaN 112500.5 NaN 12167 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15589 67.814 NaN 341580 35 0 25776 0.261 -1 DLMGDVYFFD 10 75 619.2578014468693 1236.5010499605385 2 619.2573852539062 MULTI HCD FTMS 0 0 0 15584 77583.28125 0.25871377622604985 4 -0.11165618896484375 5 Oxidation (M) _DLM(Oxidation (M))GDVYFFD_ ENSG00000137628|ENST00000393743|DDX60 19.256988751693697 0.33098864134661865 2 [YT]YE{NN|[MP]|[D{I|L}]|[EV]}[TA]D{M(Oxidation (M))|F} 10 -1 + 61.303 0 0 4.9578 4.9578 83.896 0 0 0 7.693365062317845 50.31250172269727 7.693365062317845 3.8071968632008435 0 1.9247425010840047 1.3979400086720375 0.6861818737241735 0 [YT]YE{NN|[MP]|[D{I|L}]|[EV]}[TA]D{M(Oxidation (M))|F};[YT]{[MG]|[TS]}{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YT]YE{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[WT]|[RM]};[YT]Y[PA][DV]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[TA]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[VS][DV]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[WT]|[RM]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[HN]{[WT]|[RM]} 4.9578;4.6499;4.3285;3.6258;3.1763;3.1691;2.1963;1.8371;0.033017 -;-;-;-;-;-;-;-;- 278 NaN NaN 140731.9 NaN 12168 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15590 67.817 NaN 316950 35 0 28301 0.264 + -1 AYFDRCTQC 9 69 407.4990823032047 1219.4754175098142 3 407.499267578125 MULTI HCD FTMS 0 0 0 15584 38781.76171875 0.15037155582040201 3 -0.08882904052734375 6 2 Carbamidomethyl (C) _AYFDRC(Carbamidomethyl (C))TQC(Carbamidomethyl (C))_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 7.101721422024254 0.29718071671418667 2 AY 2 -1 40.005 0 0 3.2805 0 0 0 982.3535573723508 982.3535573723508 33.01538440272459 0 0 0 0 0.3807196863200844 2 0 0 AY 3.2805 + + 25 + NaN NaN 160726.1 NaN 12169 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15591 67.821 NaN 116100 35 0 16408 0.261 + 3651 ELKNPSVSL 9 47 493.77942806471356 985.5443031962271 2 493.7797546386719 MULTI HCD FTMS 0 0 0 15584 43446.46875 0.2910597674619437 4 -0.11165618896484375 7 Unmodified _ELKNPSVSL_ ENSG00000175264|ENST00000308064|CHST1 11.494710602746466 0.2610445893512368 2 VS{I|L} 3 6 36.198 0 0 3.6729 0 0 668.3488322133726 0 668.3488322133726 0 22.897131498072124 0 0 0 1 0 0 0 + VS{I|L} 3.6729 + + 23 NaN NaN 115953.8 NaN 12170 3419 15584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15593 67.825 NaN 8456300 35 0 1234400 0.326 + 1167 AYLESFYKF 9 92 584.2894496602338 1166.5643463872675 2 584.2903442382812 MULTI HCD FTMS 0 0 0 15592 7013404.5 0.3231763821041481 5 -0.13782501220703125 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 2 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 127.48 0 0 10.928 10.928 93.07 0 0 0 66.21903517489613 14.973024840566467 14.973024840566467 7.730012720637376 0 3.274227503252014 2 1.0356668758921828 0.3054621874040891 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F} 10.928;10.265;9.3432;9.3202;9.2334;9.1278;9.0584;8.9551;8.5346;8.3985 +;+;-;-;-;-;-;-;-;- + 7135 + NaN NaN 551246.9 NaN 12171 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15594 67.83 NaN 654040 35 0 97873 0.261 + 33367 YGHLELIQL 9 88 543.3029854467579 1084.5914179603158 2 543.3033447265625 MULTI HCD FTMS 0 0 0 15592 279594.71875 0.16489705055913673 7 -0.1934051513671875 2 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 47.748688679222035 0.03472022231463587 2 E{I|L}{I|L}Q{I|L} 5 4 55.815 0 0 5.1462 0 0 470.22829509590815 0 470.22829509590815 0 43.808422131034845 0 0 0 1.524227503252014 0 0.2302046884880938 0.3807196863200844 + E{I|L}{I|L}Q{I|L} 5.1462 + + 699 NaN NaN 187112.1 NaN 12172 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15595 67.834 NaN 366450 35 0 48390 0.261 + 3315 EEIDLRSVGW 10 77 602.3044039757624 NaN 0 602.3043212890625 PEAK HCD FTMS 0 0 0 15592 262259.0625 1 0 0 3 Unmodified _EEIDLRSVGW_ ENSG00000110057|ENST00000227471|UNC93B1 103.82355648334675 9.457431262349897E-05 2 {I|L}D[R{I|L}]SVG 7 3 44.818 0 0 3.7268 0 0 258.08479506660314 201.06566867298628 459.15046373958944 0 0 0 0 0 3.048455006504028 0 2.305462187404089 0 + {I|L}D[R{I|L}]SVG 3.7268 + + 764 NaN NaN 151745 NaN 12173 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15596 67.837 NaN 267480 35 0 17930 0.261 + 717 AQLDNWSLFD 10 53 604.7844419954753 1207.5543310577505 2 604.7687377929688 MULTI HCD FTMS 0 0 0 15592 16626.595703125 0.27836088510266055 3 -0.08544158935546875 4 Unmodified _AQLDNWSLFD_ REV__ENSG00000183856|ENST00000361170|IQGAP3 5.731851221503515 0.44496410492002586 2 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 -1 37.657 0 0 3.1184 0 0 165.11106918298816 0 165.11106918298816 0 18.443802534344584 0 0 0 0 0 0.7302046884880937 0 D{M(Oxidation (M))|F}QPQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 3.1184 - 374 + NaN NaN 128003.6 NaN 12174 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15597 67.84 NaN 328200 35 0 17418 0.261 + 26688 SYANYFIRL 9 91 573.8012938186569 1145.5880347041136 2 573.80078125 MULTI HCD FTMS 0 0 0 15592 80270.09375 0.14179164539588385 -4 0.11812591552734375 5 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 45.69961567697781 0.039180348357221985 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 5 7 55.261 0 0 4.8238 0 0 505.2642994611344 0 505.2642994611344 0 11.600971678920047 0 0 0 1.6989700043360187 0 0 0.3807196863200844 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L} 4.8238 - 1705 NaN NaN 148018.7 NaN 12175 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15598 67.844 NaN 265500 35 0 56596 0.261 -1 TAMDVVYAL 9 57 499.74673630115075 997.4789196691015 2 499.7469177246094 MULTI HCD FTMS 0 0 0 15592 48158.5859375 0.05900785045861541 37 -0.9826431274414062 6 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 21.74664581756881 0.17247014374749275 2 VYA{I|L} 4 -1 37.964 0 0 3.806 0 0 533.2147423021115 0 533.2147423021115 0 23.359790849763655 0 0 0 1.3807196863200843 0 0 0 VYA{I|L} 3.806 + + 72 NaN NaN 138808.1 NaN 12176 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15599 67.847 NaN 279610 35 0 17681 0.261 + 31648 VYITGKEVFSF 11 69 645.3422417386765 1288.669930544153 2 645.343505859375 MULTI HCD FTMS 0 0 0 15592 98654.078125 0.86058208742229 -1 0.026214599609375 7 Unmodified _VYITGKEVFSF_ ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant 69.33821966488729 0.015966906237807294 2 T{I|L}P{M(Oxidation (M))|F} 4 9 50.349 0 0 3.9071 0 0 812.4057941061725 0 812.4057941061725 0 22.589869102636158 0 0 0 1.3807196863200843 0 0.7614393726401688 0 T{I|L}P{M(Oxidation (M))|F} 3.9071 - 75 NaN NaN 132080.8 NaN 12177 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15600 67.85 NaN 119490 35 0 16684 0.264 + 13059 KYLDEFLLNKI 11 50 465.9341898189306 1394.7807400569918 3 465.6037902832031 MULTI HCD FTMS 0 0 0 15592 24115.03125 0.17109760586051997 8 -0.20957183837890625 8 Unmodified _KYLDEFLLNKI_ ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF;nc|ENSG00000099331|Q13459-2|MYO9B 8.28643447893445 0.3825791798255215 2 {I|L}{I|L} 2 9 8.1876 0 0 0.58702 0 0 795.3774940626544 370.20966516666255 1165.587159229317 0 0 0 0 0 0.5 0 0 0 + {I|L}{I|L} 0.58702 + + 7 + NaN NaN 110476.9 NaN 12178 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15601 67.854 NaN 163250 35 0 16660 0.261 + 21309 PSFYAERFFKF 11 56 480.244220022398 1437.710830667394 3 480.2434387207031 MULTI HCD FTMS 0 0 0 15592 11372.8271484375 0.10396968497523142 -9 0.2656097412109375 9 Unmodified _PSFYAERFFKF_ ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C 13.534932898082838 0.33915209766063664 2 PS{M(Oxidation (M))|F} 3 8 29.693 0 0 2.0653 0 0 0 1103.5307724443696 1103.5307724443696 3.7236374744834677 0 0 0 0 0.3494850021680094 0 0 0 + PS{M(Oxidation (M))|F} 2.0653 + + 50 + NaN NaN 115329.5 NaN 12179 3420 15592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15603 67.859 NaN 1688700 35 0 419780 0.326 + 10076 IFFENHPYF 9 89 607.2872616918412 1212.5599704504823 2 608.29052734375 MULTI HCD FTMS 0 0 0 15602 316261.90625 0.4560819117512922 -1 0.0331878662109375 1 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 60.07390631473393 0.0174780869009295 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 9 2 + 64.201 0 0 5.2947 5.2947 85.996 0 0 0 35.89591373275452 9.137342758552691 9.137342758552691 7.92719286378599 0 2.642642683904553 1.2218487496163564 0 0.3494850021680094 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}NHP{M(Oxidation (M))|F}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}EGGHP{M(Oxidation (M))|F}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}GGHP{M(Oxidation (M))|F}Y;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}NHP[Y{M(Oxidation (M))|F}];[{M(Oxidation (M))|F}E]N{[WT]|[RM]}E{M(Oxidation (M))|F}[Q{I|L}];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}GGHP[Y{M(Oxidation (M))|F}];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KN{[CP]|[EA]}E{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}NHP[Y{M(Oxidation (M))|F}];[{M(Oxidation (M))|F}E]N{[WT]|[RM]}Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 5.2947;4.6409;4.2471;3.5933;2.6642;1.6853;1.6667;1.6365;1.5766;1.4922 -;-;-;-;-;-;-;-;-;- 2080 + NaN NaN 366171.7 NaN 12180 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15604 67.863 NaN 1086400 35 0 92480 0.261 + 18732 MYTKLFVGF 9 112 561.2885619358652 1120.5625709385304 2 561.2892456054688 MULTI HCD FTMS 0 0 0 15602 264853.0625 0.27286035424045174 6 -0.16021728515625 2 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 106.94017166704063 0.003441928997083001 2 {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 92.991 0 0 8.2986 8.2986 91.035 0 0 0 12.587418566968154 8.025216903412357 8.025216903412357 7.747563577826696 0 3.094187677400525 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}K{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[NS][VP]RRTYE 8.2986;7.6072;7.5824;1.2138 +;+;-;- + 1814 + NaN NaN 281706.5 NaN 12181 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15605 67.867 NaN 739430 35 0 43173 0.261 -1 YLSIDHKPC 9 94 566.7768371423638 1131.5391213515275 2 567.2794189453125 MULTI HCD FTMS 0 0 0 15602 202984.328125 0.5794262380995922 6 -0.16021728515625 3 Carbamidomethyl (C) _YLSIDHKPC(Carbamidomethyl (C))_ ENST00000565324.1_16:18839414-18839483:-|nuORF 11.640296217721598 0.25978676193971967 2 {[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][KP]S{[DA]|[EG]} 10 -1 + 31.999 0 0 2.8279 2.8279 82.583 0 0 0 1.5482466278869822 2.8077146912995197 1.5482466278869822 6.2455281878322175 0 0.6307196863200843 2 0.3807196863200844 0 {[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][KP]S{[DA]|[EG]};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K{[NV]|[RG]};{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}]RRW;{[CT]|[{M(Oxidation (M))|F}G]}C(Carbamidomethyl (C))V[{I|L}T]GE[H{I|L}];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}ST[{I|L}T][H{I|L}]W;{[YD]|[{M(Oxidation (M))|F}M]}[PG]{I|L}[VP]WW;{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}][KP]S[VS];[YN]S{[MS]|[{M(Oxidation (M))|F}A]}[KQ]K{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[H{I|L}][{I|L}T]VC(Carbamidomethyl (C)){[DA]|[EG]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}ST[{I|L}T]W[H{I|L}] 2.8279;2.2759;2.0783;2.0562;1.8982;1.6532;1.5925;1.4199;1.3489;1.3007 -;-;-;-;-;-;-;-;-;- 1021 NaN NaN 206217 NaN 12182 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15606 67.87 NaN 231340 35 0 21686 0.261 + 4959 FASSFKIVL 9 61 506.29760524226754 1010.5806575513351 2 506.29736328125 MULTI HCD FTMS 0 0 0 15602 137994.09375 0.35224371139092925 5 -0.1440277099609375 4 Unmodified _FASSFKIVL_ ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 53.832793166522166 0.026208976789938845 2 {M(Oxidation (M))|F}SSS{I|L} 5 5 48.672 0 0 4.8163 0 0 471.3415699689469 0 471.3415699689469 0 45.57319389984244 0 0 0 0.8494850021680094 0 0.7614393726401688 0 {M(Oxidation (M))|F}SSS{I|L} 4.8163 - 33 NaN NaN 139647.8 NaN 12183 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15607 67.873 NaN 340000 35 0 19518 0.261 + 6321 FPFSRPELL 9 81 553.3055239052353 1104.5964948772705 2 553.826904296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FPFSRPELL_ ENSG00000041988|ENST00000054650|THAP3;nc|ENSG00000041988|Q8WTV1-3|THAP3;nc|ENSG00000041988|Q8WTV1-4|THAP3 19.256988751693697 0.19398022840297344 2 TE{I|L}N{I|L} 5 7 36.186 0 0 3.2759 0 0 130.0527347719912 401.2188814752563 531.2716162472475 0 0 0 0 0 0 0 0.3252574989159953 0.9489700043360187 TE{I|L}N{I|L} 3.2759 - 383 + NaN NaN 149772.6 NaN 12184 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15608 67.876 NaN 255970 35 0 62964 0.261 + 11070 IYGLLKNPF 9 64 532.8106547496982 NaN 0 532.8099975585938 PEAK HCD FTMS 0 0 0 15602 80947.9921875 0.2649051445478747 6 -0.16021728515625 6 Unmodified _IYGLLKNPF_ ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF;nc|ENSG00000136758|Q96TA2-3|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant 67.34385681178166 0.011584154028685094 2 YG{I|L}{I|L}KNP 7 2 32.752 0 0 3.0793 0 0 113.08751109287273 162.05625330142814 275.1437643943009 0 0 0 0 0 2.079689690656103 0 0 0 + YG{I|L}{I|L}KNP 3.0793 + + 165 + NaN NaN 127025.9 NaN 12185 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15609 67.88 NaN 113530 35 0 14761 0.261 + 21099 PNIHFIKQANW 11 48 456.5787994053714 NaN 0 456.57861328125 PEAK HCD FTMS 0 0 0 15602 8116.24755859375 0.13106775025611006 8 -0.18924713134765625 7 Unmodified _PNIHFIKQANW_ REV__ENSG00000181222|ENST00000674977|POLR2A;REV__nc|ENSG00000181222|P24928|POLR2A 4.406150317652783 0.32962116392221075 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103246.6 NaN 12186 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15610 67.883 NaN 84229 35 0 14706 0.261 + 15930 LPNSIEASL 9 42 472.25819371884654 942.5018345044931 2 472.25848388671875 MULTI HCD FTMS 0 0 0 15602 20859.703125 0.16488000074102205 9 -0.22853851318359375 8 Unmodified _LPNSIEASL_ ENST00000521825.1_1_8:143353010-143361338:-|nuORF 10.823927491677226 0.26684000660059787 2 AS 2 7 10.005 0 0 1.0615 0 0 130.11378626406184 651.2990206354124 781.4128068994742 0 0 0 0 0 0 0 0.3807196863200844 0 + AS 1.0615 + + 21 + NaN NaN 101805.6 NaN 12187 3421 15602 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15612 67.888 NaN 274990 35 0 100240 0.327 -1 DMIKEFISM 9 67 565.2672596635032 1128.5199663938063 2 565.8869018554688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _DMIKEFISM(Oxidation (M))_ ENSG00000127980|ENST00000248633|PEX1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENST00000496420.5_1_7:92131189-92135604:-|nuORF;nc|ENSG00000127980|O43933-2|PEX1 15.248480904072842 0.22861284681709862 2 MD{I|L} 3 -1 18.959 0 0 1.68 0 0 0 766.3455294244749 766.3455294244749 4.979334554485252 0 0 0 0 0.6307196863200843 0 0 0 MD{I|L} 1.68 - 37 + NaN NaN 133123.4 NaN 12188 3422 15611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15613 67.892 NaN 766530 35 0 78668 0.261 + 12765 KYDEIFYNL 9 100 602.7977562185981 1203.5809595039962 2 602.7978515625 MULTI HCD FTMS 0 0 0 15611 138393.78125 0.017307538928705242 44 -1.1410598754882812 2 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 30.7034409873982 0.10802119112323902 2 GGK{M(Oxidation (M))|F}{I|L}HHGW 9 8 49.447 0 0 4.1083 0 0 166.07447533658984 0 166.07447533658984 0 30.506528973229052 0 0 0 1.566901560044258 0 0 0 GGK{M(Oxidation (M))|F}{I|L}HHGW 4.1083 - 2334 + NaN NaN 199880.1 NaN 12189 3422 15611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15614 67.896 NaN 352790 35 0 43964 0.261 + 5209 FFDAELSQM 9 55 552.2391290246032 1102.4637051160064 2 552.2396850585938 MULTI HCD FTMS 0 0 0 15611 98177.578125 0.02726999660436003 106 -2.7164077758789062 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 72.96794272382148 0.008127836904478181 2 KWE{I|L}SQ{M(Oxidation (M))|F} 7 4 76.362 0 0 6.9265 0 0 166.042494723424 0 166.042494723424 0 72.38306055802155 0 0 0 1.774227503252014 0 0.6861818737241735 0.7302046884880937 KWE{I|L}SQ{M(Oxidation (M))|F} 6.9265 - 266 + NaN NaN 149845.5 NaN 12190 3422 15611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15615 67.899 NaN 224630 35 0 26578 0.261 + 11398 IYPHGLVLL 9 60 512.8129480617564 1023.6113431903128 2 512.8125610351562 MULTI HCD FTMS 0 0 0 15611 99610.1875 0.3212310906026538 7 -0.159820556640625 4 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 36.466142684027034 0.08156716203802528 2 [Y{I|L}]T[R{M(Oxidation (M))|F}]V{I|L}{I|L} 8 4 + 55.45 0 0 5.4171 5.4171 92.285 0 0 0 24.20818753952375 26.49797211252192 24.20818753952375 55.45039703980876 0 1.305462187404089 2 0 0 [Y{I|L}]T[R{M(Oxidation (M))|F}]V{I|L}{I|L} 5.4171 - 58 NaN NaN 125409.6 NaN 12191 3422 15611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15616 67.903 NaN 89844 35 0 13368 0.261 + 29728 VDLPTESAI 9 44 472.750104808922 943.485656684644 2 472.75042724609375 MULTI HCD FTMS 0 0 0 15611 27206.802734375 0.16821700122286212 6 -0.1469573974609375 5 Unmodified _VDLPTESAI_ REV__ENSG00000206560|ENST00000683139|ANKRD28;REV__ENST00000462657.1_1_3:15731457-15737643:-|nuORF;REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF;REV__nc|ENSG00000206560|O15084-1|ANKRD28;REV__nc|ENSG00000206560|O15084-2|ANKRD28;REV__nc|ENSG00000206560|O15084|ANKRD28 14.838274106304384 0.23215694253501695 2 PKE{[SA]|[TG]}{I|L} 6 -1 31.872 0 0 3.3781 0 0 300.13292128730626 0 300.13292128730626 0 16.387437564371012 0 0 0 0.805462187404089 0 0.3807196863200844 0 PKE{[SA]|[TG]}{I|L} 3.3781 - 20 NaN NaN 112631.9 NaN 12192 3422 15611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15617 67.906 NaN 119930 35 0 4845 0.261 -1 HYFCEVKFE 9 36 629.7808546389957 NaN 0 629.6871948242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _HYFC(Carbamidomethyl (C))EVKFE_ ENST00000451446.1_1_13:24697062-24697869:-|nuORF 4.3292370932331545 0.2742679634796037 2 Y 1 -1 6.9897 0 0 0.55582 0 0 268.07192511632826 823.3897188775999 1091.4616439939282 0 0 0 0 0 0 0 0 0 Y 0.55582 + + 3 + NaN NaN 108969.5 NaN 12193 3422 15611 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15619 67.911 NaN 2294600 35 0 657980 0.327 + 10077 IFFENHPYF 9 111 607.2872616918412 1212.5599704504823 2 607.2876586914062 MULTI HCD FTMS 0 0 0 15618 1808025.75 0.763574932588971 1 -0.03943634033203125 1 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 155.02607137521346 3.513045939247001E-06 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F} 9 0 + 92.066 0 0 7.5927 7.5927 93.335 0 0 0 57.65769447519054 9.889917747712644 9.889917747712644 14.074973590678738 0 2.885151878060192 0 0.6237125054200234 0.7134679910804405 + + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}NHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGGHPY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}ENHPY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}NHPY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E{I|L}NHPY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}GGHPY{M(Oxidation (M))|F};[YT]R{[ET]|[MV]}H{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{[CA]|SS}NH{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}EGGHPY{M(Oxidation (M))|F} 7.5927;6.432;6.2449;5.6573;5.2138;4.9967;4.7201;4.3625;4.058;3.9454 +;-;-;-;-;-;-;-;-;- + 4731 + NaN NaN 400682.5 NaN 12194 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15620 67.915 NaN 898670 35 0 101360 0.261 + 13247 KYMDIEFDF 9 81 612.2680622783852 1222.5215716235703 2 612.2681274414062 MULTI HCD FTMS 0 0 0 15618 507776.59375 0.1661968673490337 21 -0.5465240478515625 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 90.13494162714682 0.004522430935000059 2 [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 72.54 0 0 5.9336 5.9336 84.789 0 0 0 2.167730834301068 10.930605780100834 2.167730834301068 2.167730834301068 0 2.524227503252014 0 0.8703715150305281 0 + + [YK]{M(Oxidation (M))|F}D{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K;YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K 5.9336;5.7563;5.4485;3.0557;1.6465;1.6364;1.6001 +;-;-;-;-;-;- + 790 NaN NaN 227643.5 NaN 12195 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15621 67.919 NaN 773530 35 0 46369 0.262 + 892 AYALLLQHL 9 84 521.3080328133615 1040.6015126935229 2 521.3082275390625 MULTI HCD FTMS 0 0 0 15618 220121.703125 0.5938376116444498 1 -0.03943634033203125 3 Unmodified _AYALLLQHL_ ENSG00000225697|ENST00000395550|SLC26A6;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6 101.72198241140316 0.004218805956062179 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}{I|L}QH{I|L} 9 0 + 82.59 0 0 7.9368 7.9368 90.639 0 0 0 9.381616030877282 9.381616030877282 9.381616030877282 8.010299956639813 0 2.3807196863200843 1.6989700043360187 0 0.2742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}{I|L}QH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}{I|L}QH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}{I|L}[AG]H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}{I|L}[AG]H{I|L} 7.9368;7.167;6.7884;6.0186 +;-;-;- + 247 NaN NaN 204498.2 NaN 12196 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15622 67.922 NaN 915350 35 0 119010 0.261 + 32109 VYSEVAAYEF 10 75 589.274370218589 1176.5341875039778 2 589.2741088867188 MULTI HCD FTMS 0 0 0 15618 333479.9375 0.3436563096189559 -1 0.0228271484375 4 Unmodified _VYSEVAAYEF_ ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF 139.13845188893973 1.4742728145756104E-06 2 [YE]SVVAAYE{M(Oxidation (M))|F} 10 2 + 92.401 0 0 7.8536 7.8536 89.924 0 0 0 14.90417829939986 16.53212513775344 14.90417829939986 6.665090889956673 0 2.5924778212679485 1.3010299956639813 1.8851518780601921 0 [YE]SVVAAYE{M(Oxidation (M))|F};[YE]AA[{I|L}T]AYE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]SA[{I|L}T]AYE{M(Oxidation (M))|F};[YE]SV[Q{I|L}]YE{M(Oxidation (M))|F};[YT]DVVAAYE{M(Oxidation (M))|F};[YV]SEVAAYE{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}T]VAAYE{M(Oxidation (M))|F};[YT]DV[Q{I|L}]YE{M(Oxidation (M))|F};[YV]SE[Q{I|L}]YE{M(Oxidation (M))|F};{[ET]|[MV]}{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}T]AYE{M(Oxidation (M))|F} 7.8536;7.2871;6.5869;6.5764;6.5593;6.5447;6.0714;5.282;5.2675;4.9931 -;-;-;-;-;+;-;-;-;- + 2174 NaN NaN 241654 NaN 12197 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15623 67.925 NaN 669390 35 0 220970 0.261 + 1321 AYPAIRYLL 9 61 540.3159780691352 1078.6174032050703 2 540.3162841796875 MULTI HCD FTMS 0 0 0 15618 271976.0625 0.8434949466774917 1 -0.03943634033203125 5 Unmodified _AYPAIRYLL_ ENSG00000132676|ENST00000368336|DAP3;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3 54.773552608820026 0.024892918755467567 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L} 9 0 + 52.985 0 0 4.9123 4.9123 86.786 0 0 0 11.495521576853918 30.077790165502165 11.495521576853918 9.208187539523749 0 1.8424778212679485 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}RY{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PA{I|L}[VG]Y{I|L}{I|L} 4.9123;4.0586 +;- + 137 NaN NaN 186382.5 NaN 12198 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15624 67.929 NaN 487020 35 0 26417 0.261 + 27214 SYNNFFRMF 9 82 621.2737767427004 1240.5330005522007 2 621.2739868164062 MULTI HCD FTMS 0 0 0 15618 229637.421875 0.04158779392060543 59 -1.5398941040039062 6 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 96.11092074494114 0.00436583732602279 2 EGNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 61.52 0 0 4.9592 0 0 63.99887710789705 0 63.99887710789705 0 43.09894379144197 0 0 0 1.610924374808178 0 0 0.3807196863200844 EGNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9592 - 936 + NaN NaN 166516.3 NaN 12199 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15625 67.932 NaN 287710 35 0 42085 0.261 -1 PYSINMNVF 9 70 550.7573043791946 1099.500055825189 2 550.7579345703125 MULTI HCD FTMS 0 0 0 15618 100654.2578125 0.5472166787333645 10 -0.25818634033203125 7 Oxidation (M) _PYSINM(Oxidation (M))NVF_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 16.149105407346934 0.22083165093524068 2 NV{M(Oxidation (M))|F} 3 -1 26.07 0 0 2.3711 0 0 721.3087635724625 0 721.3087635724625 0 19.080306233405295 0 0 0 0.9247425010840047 0 0 0 NV{M(Oxidation (M))|F} 2.3711 + + 44 NaN NaN 124691.2 NaN 12200 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15626 67.935 NaN 350720 35 0 140160 0.261 + 10233 IHSGLEVLL 9 42 490.792350640462 979.5701483477241 2 490.7921142578125 MULTI HCD FTMS 0 0 0 15618 105346.34375 0.23668030312306398 -8 0.22637176513671875 8 Unmodified _IHSGLEVLL_ ENST00000585058.1_1_17:29850640-29851216:+|nuORF 15.847184025352803 0.2234401846867398 2 V{I|L}{I|L} 3 6 35.445 0 0 3.6185 0 0 636.3221913068375 0 636.3221913068375 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 + V{I|L}{I|L} 3.6185 + + 20 NaN NaN 146367.2 NaN 12201 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15627 67.939 NaN 191640 35 0 16960 0.261 + -1 YTPPAHKFDC 10 56 618.2788266914031 NaN 0 618.2981567382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _YTPPAHKFDC(Carbamidomethyl (C))_ REV__ENSG00000163092|ENST00000409195|XIRP2;REV__nc|ENSG00000163092|A4UGR9-2|XIRP2;REV__nc|ENSG00000163092|A4UGR9-3|XIRP2;REV__nc|ENSG00000163092|A4UGR9|XIRP2 8.745405648335112 0.33269943387702366 2 AG 2 -1 10.969 0 0 0.88851 0 0 165.02136123589918 938.4637335687383 1103.4850948046376 0 0 0 0 0 0 0 0 0 AG 0.88851 - 17 + NaN NaN 126299.6 NaN 12202 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15628 67.942 NaN 361150 35 0 31569 0.262 + 22262 QPDDLINQL 9 57 528.2718005674051 1054.52904820161 2 528.271240234375 MULTI HCD FTMS 0 0 0 15618 70520.8828125 0.45848402937695415 -1 0.0228271484375 10 Unmodified _QPDDLINQL_ ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF 71.92227651296345 0.008466197542043549 2 [Q{I|L}]D[DP]{I|L}NQ{I|L} 9 2 + 65.771 0 0 6.237 6.237 88.937 0 0 0 4.3918801029555965 60.28688924398301 4.3918801029555965 9.208187539523749 0 1.3494850021680094 0 0.9802046884880937 1.1382104921644451 [Q{I|L}]D[DP]{I|L}NQ{I|L};[Q{I|L}]D[DP]{I|L}GGQ{I|L};[Q{I|L}]D[DP]{I|L}N[AG]{I|L};[Q{I|L}]D{I|L}[DP]NQ{I|L};[Q{I|L}]D{I|L}[DP]GGQ{I|L};[Q{I|L}]D{I|L}[DP]N[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[NP][WR]Q{I|L} 6.237;5.3638;5.3638;4.7294;3.8562;3.8562;2.516 -;-;-;-;-;-;- 151 NaN NaN 140650.4 NaN 12203 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15629 67.945 NaN 137850 35 0 30157 0.261 + -1 FTSGPDTII 9 46 496.7505382227352 991.4865235122704 2 496.7502746582031 MULTI HCD FTMS 0 0 0 15618 18945.103515625 0.2751730204912545 -10 0.29192352294921875 11 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FTSGPDTII_ REV__ENST00000403263.5_1_2:206950812-206950881:-|nuORF 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 25.217 0 0 2.5433 0 0 747.3069623264008 0 747.3069623264008 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.5433 + + 24 NaN NaN 115519.2 NaN 12204 3423 15618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15631 67.95 NaN 1739100 35 0 200800 0.327 + 7686 FYLEGGFSKF 10 101 597.7949633388251 1193.5753737444502 2 597.7951049804688 MULTI HCD FTMS 0 0 0 15630 1338550.375 0.37122924255583034 6 -0.13684844970703125 1 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 128.57297698046145 2.2510087319712773E-05 2 [Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 4 + 88.484 0 0 7.4134 7.4134 87.301 0 0 0 1.9897000433601875 14.674866071267815 1.9897000433601875 1.9897000433601875 0 2.1307196863200843 1.0969100130080565 1.1549471895720984 0.3054621874040891 [Y{I|L}]{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}GG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 7.4134;7.2467;7.204;7.1482;7.0373;6.3767;6.122;5.9236;5.9126;5.7143 -;-;-;-;+;+;-;-;-;- + 6179 NaN NaN 360236.8 NaN 12205 3424 15630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15632 67.955 NaN 1458400 35 0 87824 0.261 + 6353 FPFYYEIKM 9 96 627.298453891388 1252.582354849576 2 627.298828125 MULTI HCD FTMS 0 0 0 15630 944992.625 1 0 0 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 86.33184430468982 0.004622086694044132 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 74.536 0 0 5.9506 5.9506 85.312 0 0 0 3.4507763009207935 6.716838869797513 3.4507763009207935 3.4507763009207935 0 2.6435078169319297 1.6989700043360187 0.9049471895720985 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]P{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]E{I|L}M{I|L}K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]PKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A[HV]NE[RH];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE 5.9506;5.6751;5.4597;5.4143;4.7499;4.7147;4.1641;3.6824;3.6615;3.5238 +;+;-;-;-;-;-;-;-;- + 6300 NaN NaN 303971.7 NaN 12206 3424 15630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15633 67.958 NaN 104980 35 0 3884.1 0.261 + -1 WTRMPTKALK 10 36 624.3524884638617 NaN 0 624.5732421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _WTRM(Oxidation (M))PTKALK_ REV__ENSG00000141497|ENST00000433935|ZMYND15;REV__ENST00000574829.5_1_17:4643771-4647168:+|nuORF;REV__nc|ENSG00000141497|Q9H091-2|ZMYND15;REV__nc|ENSG00000141497|Q9H091-3|ZMYND15 1.4819007175156935 0.33891598740166873 2 {I|L} 1 -1 3.9794 0 0 0.3192 0 0 445.32379909393586 685.2624605768186 1130.5862596707545 0 0 0 0 0 0 0 0 0 {I|L} 0.3192 + + 5 + NaN NaN 102738.4 NaN 12207 3424 15630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15635 67.963 NaN 6897500 35 0 2228700 0.327 + 24616 RYLPTGSFPF 10 66 592.8085510866069 1183.6025492400138 2 592.8090209960938 MULTI HCD FTMS 0 0 0 15634 4931379.5 0.7715202339508644 1 -0.03939056396484375 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 103.82355648334675 5.879419037132958E-05 2 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 108.98 0 0 9.2073 9.2073 97.02 0 0 0 17.085521743960328 94.20100967372576 17.085521743960328 26.576447055154517 0 3.1549471895720984 1.3979400086720375 1.2302046884880937 0 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};[YR]{I|L}PT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 9.2073;6.9619;6.4769;3.7525;1.7422 +;-;-;-;- + 296 NaN NaN 550729.3 NaN 12208 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15636 67.968 NaN 3390900 35 0 478100 0.255 + 1168 AYLESFYKF 9 100 584.2894496602338 1166.5643463872675 2 584.2901611328125 MULTI HCD FTMS 0 0 0 15634 3006186 0.1385244948315958 10 -0.27147674560546875 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 176.83740622441886 1.0594397382223596E-10 2 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 132.93 0 0 11.395 11.395 96.585 0 0 0 66.91938003771779 14.973024840566453 14.973024840566453 14.195677030999192 0 3.2302046884880937 2 1.0189301784845295 0.6109243748081782 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SE{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};AY{I|L}{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}YK{M(Oxidation (M))|F} 11.395;10.179;9.3432;9.272;9.2338;9.1469;8.972;8.9342;8.7871;8.6456 +;+;-;-;-;-;-;-;-;- + 11960 + NaN NaN 592620.9 NaN 12209 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15637 67.971 NaN 1294400 35 0 112090 0.261 + 26689 SYANYFIRL 9 114 573.8012938186569 1145.5880347041136 2 573.80126953125 MULTI HCD FTMS 0 0 0 15634 508300.5625 0.8978782725356952 1 -0.03939056396484375 3 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 157.7952019732125 5.857147217999733E-07 2 R{I|L}{M(Oxidation (M))|F}YNA[MT] 8 8 82.464 0 0 7.1984 0 0 131.09467722311314 0 131.09467722311314 0 44.93017638764117 0 0 0 3 0 1.3737125054200234 1.9163865622122673 R{I|L}{M(Oxidation (M))|F}YNA[MT] 7.1984 - 4984 + NaN NaN 284133.4 NaN 12210 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15638 67.974 NaN 1540900 35 0 254210 0.261 + 843 AWGRWESF 8 92 519.7439652949319 1037.4733776566636 2 520.2586059570312 MULTI HCD FTMS 0 0 0 15634 25541.1015625 0.3036991298121415 11 -0.29117584228515625 4 Unmodified _AWGRWESF_ REV__ENST00000461912.1_1_7:56144354-56144429:+|nuORF 14.581692164780916 0.48650662947107914 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES 8 -1 55.954 0 0 5.3932 0 0 0 161.02899160217115 161.02899160217115 12.741502060549692 0 0 0 0 0 1.6989700043360187 0.3054621874040891 0.7059771852360797 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES 5.3932 - 882 NaN NaN 321980 NaN 12211 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15639 67.978 NaN 533780 35 0 68905 0.261 + 33368 YGHLELIQL 9 80 543.3029854467579 1084.5914179603158 2 543.3032836914062 MULTI HCD FTMS 0 0 0 15634 148673.453125 0.08768339411544973 12 -0.3240203857421875 5 Unmodified _YGHLELIQL_ ENSG00000169919|ENST00000304895|GUSB;ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB 43.85829265575387 0.04763305254408404 2 {I|L}DE{I|L}{I|L}Q{I|L} 7 4 51.969 0 0 4.7916 0 0 242.12620742011876 0 242.12620742011876 0 37.36503993667743 0 0 0 1.3494850021680094 0 0 0.3807196863200844 {I|L}DE{I|L}{I|L}Q{I|L} 4.7916 - 320 NaN NaN 171895.1 NaN 12212 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15640 67.981 NaN 649580 35 0 78029 0.261 + 22023 QFYPFLYNI 9 88 602.8063629580017 NaN 0 602.8229370117188 PEAK HCD FTMS 0 0 0 15634 72923.7890625 0.915464370697043 2 -0.05558013916015625 6 Unmodified _QFYPFLYNI_ ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17 25.399314129420986 0.1511568710901456 2 {I|L}{M(Oxidation (M))|F}Q 3 8 22.193 0 0 1.8439 0 0 535.2446096056534 277.11880636160606 812.3634159672595 0 0 0 0 0 0.5 0 0 0.5994850021680094 {I|L}{M(Oxidation (M))|F}Q 1.8439 - 1639 + NaN NaN 192254.3 NaN 12213 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15641 67.984 NaN 254760 35 0 22876 0.261 + 34013 YMCLHEKEF 9 74 600.2656373747836 1198.5167218163672 2 600.2650146484375 MULTI HCD FTMS 0 0 0 15634 74802.1953125 0.4697121017763411 1 -0.03939056396484375 7 Unmodified _YMCLHEKEF_ REV__HAUS6|p.W15C|1|0.15|ENSG00000147874|chr9:19102607-19102607|C/A|missense_variant 15.847184025352803 0.2234401846867398 2 [YV]{M(Oxidation (M))|F}[SG]{[MG]|[TS]}YE{M(Oxidation (M))|F} 10 -1 + 39.287 0 0 3.278 3.278 80.689 0 0 0 15.329693599488298 9.097404794731062 9.097404794731062 0.90743145471194 0 0.7134679910804405 1.6989700043360187 0.4247425010840047 0 [YV]{M(Oxidation (M))|F}[SG]{[MG]|[TS]}YE{M(Oxidation (M))|F};[YV][YQ]{[MG]|[TS]}YE{M(Oxidation (M))|F} 3.278;3.2023 -;- 193 NaN NaN 134213.2 NaN 12214 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15642 67.988 NaN 314440 35 0 49903 0.262 + 19698 NYAAALETF 9 61 500.2423635899525 998.470174246705 2 500.2422790527344 MULTI HCD FTMS 0 0 0 15634 96262.1953125 0.36608663745079106 -6 0.16403961181640625 8 Unmodified _NYAAALETF_ ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF;nc|ENSG00000165416|Q9Y2Z0|SUGT1 60.07390631473393 0.0174780869009295 2 [YN]AAA{I|L}ET{M(Oxidation (M))|F} 9 0 + 60.894 0 0 6.0987 6.0987 90.157 0 0 0 9.251080089869049 19.570356600546006 9.251080089869049 12.003187623076954 0 2.1435078169319297 1.5228787452803376 0 0.3807196863200844 + + [YN]AAA{I|L}ET{M(Oxidation (M))|F};[YN][VG]G{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NAA{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QA]G{I|L}ET{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGAA{I|L}ET{M(Oxidation (M))|F};[YV][NG]G{I|L}ET{M(Oxidation (M))|F} 6.0987;4.8966;3.8735;2.6713;2.5699;2.4669 +;-;-;-;-;- + 435 NaN NaN 131249.2 NaN 12215 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15643 67.991 NaN 126210 35 0 18459 0.262 + 31871 VYMVMVTGYF 10 45 403.86166657421364 NaN 0 403.5272521972656 PEAK HCD FTMS 0 0 0 15634 33749.8359375 0.8522953193962642 -3 0.0752105712890625 9 Unmodified _VYMVMVTGYF_ REV__ENSG00000176198|ENST00000641082|OR11H4;REV__nc|ENSG00000176198|Q8NGC9|OR11H4 1.9063754702782614 0.33855269584400594 2 P 1 -1 6.9897 0 0 0.86752 0 0 543.5767439376867 162.0558260553344 705.6325699930211 0 0 0 0 0 0 0 0 0 P 0.86752 - 2 + NaN NaN 102457.7 NaN 12216 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15644 67.994 NaN 166420 35 0 16607 0.261 -1 MYDSFWRQF 9 53 648.2806742477159 1294.5467955622316 2 648.7830810546875 MULTI HCD FTMS 0 0 0 15634 31356.32421875 0.46383020498690253 -5 0.13782501220703125 10 Oxidation (M) _M(Oxidation (M))YDSFWRQF_ ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF;nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1 8.745405648335112 0.2847203663274469 2 P{M(Oxidation (M))|F}DW[YE]Q{M(Oxidation (M))|F} 8 -1 17.396 0 0 1.3438 0 0 164.07152808351913 0 164.07152808351913 0 6.709412807357753 0 0 0 0.3494850021680094 0 0 0 P{M(Oxidation (M))|F}DW[YE]Q{M(Oxidation (M))|F} 1.3438 - 54 + NaN NaN 106818.1 NaN 12217 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15645 67.998 NaN 106760 35 0 11303 0.264 + 4932 FAMTSFVIG 9 42 486.7484264984599 971.4823000637198 2 486.74835205078125 MULTI HCD FTMS 0 0 0 15634 23547.673828125 0.6419029006786924 1 -0.03939056396484375 11 Unmodified _FAMTSFVIG_ AUTS2|p.V97_T98insIGNASPH|1|0.14|ENSG00000158321|chr7:69599943-69599944|-/GATAGGAAATGCCTCCCCCCA|inframe_insertion 4.75600775471527 0.31496297302216103 2 GV 2 8 14.024 0 0 1.4435 0 0 132.096589505807 680.2740572565061 812.3706467623131 0 0 0 0 0 0.3054621874040891 0 0 0 GV 1.4435 - 15 + NaN NaN 115212.9 NaN 12218 3425 15634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15647 68.003 NaN 121100 35 0 6667.3 0.327 + 31649 VYITGKEVFSF 11 53 645.3422417386765 1288.669930544153 2 645.3427124023438 MULTI HCD FTMS 0 0 0 15646 20813.7578125 0.18156316987411153 5 -0.10736083984375 1 Unmodified _VYITGKEVFSF_ ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant 28.233623360808718 0.2127292296419295 2 [YV]{I|L}T 4 7 35.974 0 0 2.7916 0 0 0 809.3829439752561 809.3829439752561 2.0340219607612653 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 + [YV]{I|L}T 2.7916 + + 128 + NaN NaN 115541.4 NaN 12219 3426 15646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15648 68.007 NaN 189010 35 0 30297 0.261 + 3850 EPIPYEFMA 9 55 556.7519257552318 1111.4892985772635 2 557.2537231445312 MULTI HCD FTMS 0 0 0 15646 24111.626953125 0.22350359274177956 -4 0.11460113525390625 2 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 48.345845343767074 0.03388484103555672 2 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4 5 45.706 0 0 4.1122 0 0 599.2930775373062 0 599.2930775373062 0 25.260847058321687 0 0 0 1 0 1.1549471895720984 0 + E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4.1122 + + 40 NaN NaN 120138.9 NaN 12220 3426 15646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15649 68.011 NaN 106300 35 0 9263.7 0.262 -1 YRYRACDHCL 10 52 452.8703182296472 NaN 0 453.2094421386719 PEAK HCD FTMS 0 0 0 15646 19775.474609375 0.8182958537913163 -10 0.29534149169921875 3 Carbamidomethyl (C) _YRYRAC(Carbamidomethyl (C))DHCL_ ENSG00000135632|ENST00000389501|SMYD5 0.776531954647913 0.3395196853010637 2 G 1 -1 5.4846 0 0 0.60688 0 0 198.36482971925687 645.3155001275999 843.6803298468567 0 0 0 0 0 0 0 0 0 G 0.60688 - 6 + NaN NaN 106071.2 NaN 12221 3426 15646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15650 68.014 NaN 51070 35 0 5040.6 0.261 + 2467 DRFFMWIFF 9 35 436.8797402574923 NaN 0 436.8796691894531 PEAK HCD FTMS 0 0 0 15646 17090.650390625 0.7431565097819834 -3 0.09177398681640625 4 Unmodified _DRFFMWIFF_ ENSG00000174343|ENST00000310169|CHRNA9 0.9622753412299311 0.2905837902567025 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101598.2 NaN 12222 3426 15646 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15652 68.019 NaN 1002000 35 0 289230 0.327 + 2633 DVASVIVTKL 10 67 522.8184960103958 1043.6224390875916 2 522.8185424804688 MULTI HCD FTMS 0 0 0 15651 188390.9375 0.2579387762995711 -2 0.05558013916015625 1 Unmodified _DVASVIVTKL_ ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54 97.74103586103693 0.00040826645800522306 2 [DV]ASV{I|L}VTK{I|L} 10 0 + 99.268 0 0 9.5118 9.5118 97.703 0 0 0 20.993624753846092 79.88203938940933 20.993624753846092 33.48258770979733 0 2.2376954943324545 1.5228787452803376 1.829689690656103 0 + + [DV]ASV{I|L}VTK{I|L};[VS]{[DA]|[EG]}V{I|L}VTK{I|L};[KT]V{I|L}[VS]A[DV]{I|L} 9.5118;6.3035;3.2496 +;-;- + 251 NaN NaN 241322.5 NaN 12223 3427 15651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15653 68.023 NaN 514670 35 0 25776 0.261 -1 TYPERPPLC 9 98 566.7768371423638 1131.5391213515275 2 567.2792358398438 MULTI HCD FTMS 0 0 0 15651 107594.1875 0.3071315696161317 12 -0.3175201416015625 2 Carbamidomethyl (C) _TYPERPPLC(Carbamidomethyl (C))_ ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI;nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;nc|ENSG00000188992|Q6XZB0-8|LIPI 14.838274106304384 0.23215694253501695 2 {[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][K{I|L}]EQ 9 -1 + 27.667 0 0 2.4451 2.4451 80.551 0 0 0 1.9614996160926559 -1.4747679364991448 -1.4747679364991448 1.5355320201406677 0 0 2 0.5994850021680094 0 {[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][K{I|L}]EQ;{[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][KP]S{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}[H{I|L}][{I|L}T]VSMQ;{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}][K{I|L}]EQ;{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}]RRW;{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}][KP]S[VS];[YN]S{[MS]|[{M(Oxidation (M))|F}A]}[KQ]K{M(Oxidation (M))|F} 2.4451;2.3094;1.235;1.2097;1.2059;1.074;1.0669 -;-;-;-;-;-;- 533 NaN NaN 180244.2 NaN 12224 3427 15651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15654 68.027 NaN 355920 35 0 32551 0.261 + 18733 MYTKLFVGF 9 78 561.2885619358652 1120.5625709385304 2 561.2890625 MULTI HCD FTMS 0 0 0 15651 92095.171875 0.09487948141678666 12 -0.3175201416015625 3 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 103.35351024395868 0.004027461563756449 2 {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 83.466 0 0 7.4486 7.4486 92.049 0 0 0 71.51068672026824 16.478174818886373 16.478174818886373 9.939804789107157 0 2.7614393726401687 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}YTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};{M(Oxidation (M))|F}YTKVV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 7.4486;6.5615;4.3859 +;+;- + 434 + NaN NaN 145276.9 NaN 12225 3427 15651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15655 68.03 NaN 205770 35 0 33105 0.261 + 1958 DAINDANLL 9 64 479.74567906022276 NaN 0 479.7458190917969 PEAK HCD FTMS 0 0 0 15651 30916.34375 0.16990073926484303 -4 0.10796356201171875 4 Unmodified _DAINDANLL_ ENSG00000160752|ENST00000368356|FDPS;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 83.42873516780209 0.0018677447555603313 2 {I|L}NDAN 5 4 43.651 0 0 4.5589 0 0 186.06513634134552 241.1555575006469 427.22069384199244 0 0 0 0 0 1.9247425010840047 0 0.75 0.9436726795685343 + {I|L}NDAN 4.5589 + + 58 + NaN NaN 114929.1 NaN 12226 3427 15651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15657 68.035 NaN 1620000 35 0 430500 0.327 + 4402 EYDNFFQHL 9 102 606.7694727573785 1211.5243925815569 2 607.2875366210938 MULTI HCD FTMS 0 0 0 15656 57085.80078125 0.5250152737633927 3 -0.07500457763671875 1 Unmodified _EYDNFFQHL_ ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 32.30548876998284 0.10066689432505688 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 8 8 45.653 0 0 3.7683 0 0 112.0481365135525 0 112.0481365135525 0 0.35637646486003405 0 0 0 0.3054621874040891 0 0.6747425010840047 0.4247425010840047 {M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 3.7683 - 3351 + NaN NaN 343931.2 NaN 12227 3428 15656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15658 68.039 NaN 374240 35 0 26869 0.261 + 34014 YMCLHEKEF 9 71 600.2656373747836 1198.5167218163672 2 600.2664794921875 MULTI HCD FTMS 0 0 0 15656 62231.890625 0.3907782655424205 4 -0.11449432373046875 2 Unmodified _YMCLHEKEF_ REV__HAUS6|p.W15C|1|0.15|ENSG00000147874|chr9:19102607-19102607|C/A|missense_variant 20.453626601364224 0.18364154288633264 2 YAAVESP{M(Oxidation (M))|F} 8 -1 57.574 0 0 4.8038 0 0 316.1029225080094 0 316.1029225080094 0 31.632163132559157 0 0 0 0.805462187404089 0 0.7059771852360797 0 YAAVESP{M(Oxidation (M))|F} 4.8038 - 416 NaN NaN 161792.7 NaN 12228 3428 15656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15659 68.043 NaN 484030 35 0 156140 0.261 + 25807 SLPEDFYHF 9 68 577.7613356029801 1153.5081182727602 2 577.7617797851562 MULTI HCD FTMS 0 0 0 15656 108515.96875 0.4031410421473482 -7 0.17638397216796875 3 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 15.847184025352803 0.2234401846867398 2 {[TV]|[{I|L}S]}VW 4 7 28.901 0 0 2.5055 0 0 0 665.2213805620758 665.2213805620758 10.31743128760553 0 0 0 0 0.5 1.5228787452803376 0 0 {[TV]|[{I|L}S]}VW 2.5055 - 42 NaN NaN 164420.3 NaN 12229 3428 15656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15661 68.048 NaN 1566600 35 0 228790 0.327 + 32110 VYSEVAAYEF 10 83 589.274370218589 1176.5341875039778 2 589.274658203125 MULTI HCD FTMS 0 0 0 15660 871452.5 0.8980454788474739 5 -0.15404510498046875 1 Unmodified _VYSEVAAYEF_ ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF 147.05914393524117 2.757038765776773E-07 2 [YE]SVAVAYE{M(Oxidation (M))|F} 10 3 + 99.575 0 0 8.4634 8.4634 91.142 0 0 0 7.403626894942434 16.53212513775344 7.403626894942434 7.403626894942434 0 2.2302046884880937 1.3010299956639813 2.2658715643802765 0 [YE]SVAVAYE{M(Oxidation (M))|F};[YT]DVAVAYE{M(Oxidation (M))|F};[YE]AA[{I|L}T]AYE{M(Oxidation (M))|F};[YV]SEAVAYE{M(Oxidation (M))|F};[YE]A[VS]VAYE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]SA[{I|L}T]AYE{M(Oxidation (M))|F};[YV]SEVAAYE{M(Oxidation (M))|F};[YE]SV[Q{I|L}]YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]S[VS]VAYE{M(Oxidation (M))|F};{[ET]|[MV]}[{M(Oxidation (M))|F}T]AVAYE{M(Oxidation (M))|F} 8.4634;7.8341;7.4634;7.3378;7.0578;6.8465;6.8159;6.6329;6.441;6.3542 -;-;-;-;-;-;+;-;-;- + 2488 NaN NaN 334606.5 NaN 12230 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15662 68.052 NaN 789140 35 0 87803 0.261 + 13248 KYMDIEFDF 9 70 612.2680622783852 1222.5215716235703 2 612.2682495117188 MULTI HCD FTMS 0 0 0 15660 650988.75 0.21307065402611078 27 -0.7273483276367188 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 55.50274090549119 0.023872834264864425 2 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F} 9 5 + 68.126 0 0 5.5726 5.5726 84.802 0 0 0 4.634155135475737 30.78463459467826 4.634155135475737 3.7628749457997657 0 1.5 1.3979400086720375 0.805462187404089 0 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D[YE]K;YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[SA]|[TG]}D{M(Oxidation (M))|F};YYV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YE]K;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K 5.5726;5.2648;3.1583;2.9513;1.7617;1.672;1.5598 -;-;-;-;-;-;- 513 NaN NaN 214480.6 NaN 12231 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15663 68.056 NaN 965470 35 0 120950 0.261 + 12914 KYGIVQEFF 9 93 565.7976041113005 1129.580655289401 2 565.7977905273438 MULTI HCD FTMS 0 0 0 15660 590299.6875 0.5311657961619809 -2 0.02902984619140625 3 Unmodified _KYGIVQEFF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 103.35351024395868 0.004027461563756449 2 [YK]{I|L}GVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 76.582 0 0 6.7797 6.7797 85.533 0 0 0 0.20181229336984075 40.96401568399578 0.20181229336984075 0.6694678963061307 0 2.110924374808178 0 0.5629529932484498 0.6989700043360187 [YK]{I|L}GVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}VQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VS]VQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}GV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}V[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]GV{I|L}QE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VS]V[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TA]{I|L}QE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PS]QV[PA]K{M(Oxidation (M))|F};[YK]GV{I|L}[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7797;6.7204;6.2161;5.9645;5.9052;5.4996;5.401;4.9954;4.7866;4.6844 -;+;-;-;-;-;-;-;-;- + 2210 NaN NaN 249583.7 NaN 12232 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15664 68.066 NaN 402360 35 0 109500 0.261 + 1322 AYPAIRYLL 9 69 540.3159780691352 1078.6174032050703 2 540.3162231445312 MULTI HCD FTMS 0 0 0 15660 144196.90625 0.447206127739286 7 -0.20656585693359375 4 Unmodified _AYPAIRYLL_ ENSG00000132676|ENST00000368336|DAP3;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3 32.30548876998284 0.10066689432505688 2 C{I|L} 2 8 24.776 0 0 2.297 0 0 844.5162822329479 0 844.5162822329479 0 10.083559388717376 0 0 0 0.3807196863200844 0 0 0 C{I|L} 2.297 - 63 NaN NaN 149344.8 NaN 12233 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15665 68.069 NaN 308880 35 0 60193 0.261 + 7185 FSLENHSLD 9 50 531.2492324180215 1060.483911902843 2 531.24951171875 MULTI HCD FTMS 0 0 0 15660 200751.34375 0.8780163414640647 -2 0.02902984619140625 5 Unmodified _FSLENHSLD_ REV__ENSG00000132000|ENST00000588872|PODNL1 18.1463463914782 0.20357593197100715 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 -1 37.447 0 0 3.5311 0 0 0 710.2767537531072 710.2767537531072 12.939002879805201 0 0 0 0 1 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3.5311 + + 64 NaN NaN 135900.7 NaN 12234 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15666 68.072 NaN 247960 35 0 31839 0.261 + 5210 FFDAELSQM 9 53 552.2391290246032 1102.4637051160064 2 552.2395629882812 MULTI HCD FTMS 0 0 0 15660 112585.78125 0.03127204735563669 113 -2.9067001342773438 6 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 55.50274090549119 0.023872834264864425 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F} 9 0 + 71.124 0 0 6.4514 6.4514 89.284 0 0 0 4.762036441594191 66.52040331657425 4.762036441594191 9.208187539523749 0 2.3494850021680094 0 0.3807196863200844 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQ{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]{M(Oxidation (M))|F} 6.4514;5.6162 +;- + 247 NaN NaN 126764 NaN 12235 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15667 68.076 NaN 152100 35 0 13650 0.261 + 23506 RMYFRDKF 8 52 581.7932842385304 NaN 0 581.7742919921875 PEAK HCD FTMS 0 0 0 15660 23151.0078125 0.5406125428800175 -2 0.02902984619140625 7 Unmodified _RMYFRDKF_ REV__ENSG00000196611|ENST00000315274|MMP1 2.577480529830294 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.60174 0 0 149.14488169876728 896.3222775523938 1045.467159251161 0 0 0 0 0 0 0 0 0 {I|L} 0.60174 - 5 + NaN NaN 105011.9 NaN 12236 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15668 68.079 NaN 169700 35 0 13568 0.261 + 11399 IYPHGLVLL 9 49 512.8129480617564 1023.6113431903128 2 512.81298828125 MULTI HCD FTMS 0 0 0 15660 68472.0078125 0.22081413856753165 14 -0.38997650146484375 8 Unmodified _IYPHGLVLL_ ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF 28.173230860318316 0.11963627304438548 2 V{I|L}{I|L} 3 6 22.479 0 0 2.1961 0 0 680.369432517775 0 680.369432517775 0 5.489634511125061 0 0 0 0.3807196863200844 0 0 0 + V{I|L}{I|L} 2.1961 + + 12 NaN NaN 114272 NaN 12237 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15669 68.082 NaN 236600 35 0 29866 0.261 + 1759 CLIMMENL 8 65 483.7286724763481 NaN 0 483.716064453125 PEAK HCD FTMS 0 0 0 15660 32623.9609375 0.4973796808450197 -6 0.136993408203125 9 Unmodified _CLIMMENL_ ENST00000525819.1_1_4:102117192-102268666:-|nuORF 5.760428011301431 0.38822285293237185 2 N{M(Oxidation (M))|F} 2 7 7.9588 0 0 0.82437 0 0 131.12090588843995 570.1870064772427 701.3079123656826 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 0.82437 - 14 + NaN NaN 119697.1 NaN 12238 3429 15660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15671 68.087 NaN 800450 35 0 299300 0.327 + 10234 IHSGLEVLL 9 44 490.792350640462 979.5701483477241 2 490.7925720214844 MULTI HCD FTMS 0 0 0 15670 343559.65625 0.7718711507926033 -1 0.0392913818359375 1 Unmodified _IHSGLEVLL_ ENST00000585058.1_1_17:29850640-29851216:+|nuORF 20.453626601364224 0.18364154288633264 2 YNEV{I|L}{I|L} 6 5 55.266 0 0 5.6419 0 0 230.16270644355626 0 230.16270644355626 0 44.296831374325905 0 0 0 1.3494850021680094 0 0 0 YNEV{I|L}{I|L} 5.6419 - 67 NaN NaN 212847.7 NaN 12239 3430 15670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15672 68.092 NaN 365290 35 0 19043 0.261 + 27215 SYNNFFRMF 9 67 621.2737767427004 1240.5330005522007 2 621.27392578125 MULTI HCD FTMS 0 0 0 15670 238473.015625 0.04318793752542785 66 -1.7596206665039062 2 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 96.36657018975838 0.004359138328518304 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 65.993 0 0 5.3197 0 0 63.99817207469807 0 63.99817207469807 0 52.497906580286795 0 0 0 2.254432191740108 0 0 0.3807196863200844 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.3197 - 360 + NaN NaN 150619.8 NaN 12240 3430 15670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15673 68.095 NaN 286990 35 0 62235 0.261 -1 0 49 536.164315824801 535.1570393582009 1 536.1654663085938 MULTI HCD FTMS 0 0 0 15670 152707.140625 0.5217357858096295 -38 1.05963134765625 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 2.8935 0 0 370.07831728964464 0 370.07831728964464 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.8935 - 2 + NaN NaN 135049.7 NaN 12241 3430 15670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15674 68.098 NaN 321690 35 0 30595 0.261 -1 0 62 576.3085315721577 2301.2050204222305 4 576.3085327148438 MULTI HCD FTMS 0 0 0 15670 117786.125 0.31239458983807294 12 -0.31118011474609375 4 NaN NaN 2 {M(Oxidation (M))|F}Q{I|L} 3 -1 30.445 0 0 1.323 0 0 1894.9806195753592 0 1894.9806195753592 0 15.752574989159951 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}Q{I|L} 1.323 - 131 NaN NaN 139295.5 NaN 12242 3430 15670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15675 68.102 NaN 380890 35 0 26113 0.261 -1 VYYMIVCLI 9 67 595.3012073150092 1188.5878616968182 2 595.3008422851562 MULTI HCD FTMS 0 0 0 15670 45381.796875 0.5166255494438792 1 -0.02285003662109375 5 Carbamidomethyl (C),Oxidation (M) _VYYM(Oxidation (M))IVC(Carbamidomethyl (C))LI_ ENSG00000037749|ENST00000522782|MFAP3;nc|ENSG00000037749|P55082-2|MFAP3 9.347437153973935 0.2795965555214564 2 [YV]Y 3 -1 32.447 0 0 2.7299 0 0 0 760.3690866326182 760.3690866326182 1.9015085044215851 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]Y 2.7299 + + 49 NaN NaN 159371.8 NaN 12243 3430 15670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15676 68.105 NaN 142060 35 0 4757.3 0.261 + 32664 WNPTLSAESVR 11 44 630.324272501501 NaN 0 630.3239135742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _WNPTLSAESVR_ ENST00000264963.8_2_2:97371867-97372074:-|nuORF 5.296884461304476 0.3270944076746277 2 CWVYY 5 11 15.037 0 0 1.1947 0 0 276.1805751770269 265.1305330865844 541.3111082636113 0 0 0 0 0 0 0 0 0 CWVYY 1.1947 - 27 + NaN NaN 112090 NaN 12244 3430 15670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15678 68.11 NaN 4510000 35 0 1435000 0.327 + 24617 RYLPTGSFPF 10 76 592.8085510866069 1183.6025492400138 2 592.8088989257812 MULTI HCD FTMS 0 0 0 15677 2920346.75 0.45689174961644036 7 -0.19683074951171875 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 110.5527297667825 5.049829312965123E-05 2 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 93.906 0 0 7.9339 7.9339 94 0 0 0 4.71217778224478 67.04873480831203 4.71217778224478 14.419628234359578 0 3.1237125054200234 1.3010299956639813 1.5044321917401078 0 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E[YV];[YV]{M(Oxidation (M))|F}[HQ][KT][YV];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}[YV] 7.9339;6.7156;4.7294;3.9626;2.0374;1.5335;0.73287;0.70424 +;-;-;-;-;-;-;- + 350 NaN NaN 702857.9 NaN 12245 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15679 68.114 NaN 2947100 35 0 390750 0.261 + 1169 AYLESFYKF 9 109 584.2894496602338 1166.5643463872675 2 584.2899169921875 MULTI HCD FTMS 0 0 0 15677 2218794.25 0.10224162863392333 16 -0.429290771484375 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 163.03601447609117 7.615514112917802E-09 2 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 128.12 0 0 10.983 10.983 95.717 0 0 0 71.45848644456383 14.973024840566453 14.973024840566453 11.03309617501803 0 3.2302046884880937 2 0.7302046884880937 0.5941876774005248 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}SES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 10.983;10.037;9.3316;9.1392;9.032;9.009;8.8867;8.8199;8.3601;8.342 +;+;-;-;-;-;-;-;-;- + 12787 + NaN NaN 547230.8 NaN 12246 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15680 68.118 NaN 2549200 35 0 444760 0.261 + 1239 AYLPVNESF 9 96 520.2583165611793 1038.5020801891585 2 520.2586059570312 MULTI HCD FTMS 0 0 0 15677 1727804.875 1 0 0 3 Unmodified _AYLPVNESF_ ENSG00000167658|ENST00000309311|EEF2 160.51597146486608 8.986712039288196E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F} 9 0 + 106.23 0 0 10.229 10.229 96.452 0 0 0 19.56022414822435 76.53750187790001 19.56022414822435 14.916192414640847 0 2.8723637474483468 1.6989700043360187 0.3494850021680094 1.0189301784845295 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVENS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[DN]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVEGGS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVN{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NVP{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EN[VP]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PDD[KA]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGG{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]} 10.229;8.7929;8.3613;7.6599;7.203;6.5537;6.053;5.998;5.5614;5.389 +;-;-;-;-;-;-;-;-;- + 1139 NaN NaN 479389.3 NaN 12247 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15681 68.121 NaN 794420 35 0 45136 0.261 + 6354 FPFYYEIKM 9 76 627.298453891388 1252.582354849576 2 627.2991943359375 MULTI HCD FTMS 0 0 0 15677 628837.625 0.6654418334746264 7 -0.19683074951171875 4 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 72.678 0 0 5.8022 5.8022 84.453 0 0 0 3.0411342943241237 1.8483311575249672 1.8483311575249672 1.8483311575249672 0 2.5994850021680094 1.6989700043360187 0.6382104921644451 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]P{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[EP][DN]{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;[Y{M(Oxidation (M))|F}]PKYY{M(Oxidation (M))|F}PE 5.8022;5.6547;5.5594;5.4164;5.1202;4.5042;4.3219;4.1123;3.7891;3.7424 +;-;+;-;-;-;-;-;-;- + 2880 NaN NaN 198547.8 NaN 12248 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15682 68.125 NaN 1204300 35 0 114860 0.261 + 7687 FYLEGGFSKF 10 90 597.7949633388251 1193.5753737444502 2 598.2967529296875 MULTI HCD FTMS 0 0 0 15677 498489.53125 0.19485935042066171 15 -0.4031219482421875 5 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 110.79276546118962 5.020237097528524E-05 2 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F} 9 2 + 81.041 0 0 6.7898 6.7898 89.881 0 0 0 48.02912017908314 11.509461452434238 11.509461452434238 9.208187539523749 0 2.6237125054200234 0 1.25 0.3252574989159953 {M(Oxidation (M))|F}Y{I|L}EN{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}EGG{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[DG]SK{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}YE;[Y{M(Oxidation (M))|F}]{I|L}EG[YQ]K{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}GG{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}YE;[Y{I|L}]{M(Oxidation (M))|F}EG[YQ]K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}TN{M(Oxidation (M))|F}DK{M(Oxidation (M))|F};{M(Oxidation (M))|F}EY{I|L}N{M(Oxidation (M))|F}SK{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}NE{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 6.7898;6.0183;5.4134;5.0543;4.8791;4.802;4.1268;4.0946;4.0346;3.8393 -;+;-;-;-;-;-;-;-;- + 2805 + NaN NaN 280322.1 NaN 12249 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15683 68.128 NaN 859290 35 0 72103 0.261 + 26690 SYANYFIRL 9 104 573.8012938186569 1145.5880347041136 2 573.8013305664062 MULTI HCD FTMS 0 0 0 15677 385660.875 0.6812436298053569 7 -0.19683074951171875 6 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 157.7952019732125 5.857147217999733E-07 2 {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L} 9 0 + 94.85 0 0 8.2796 8.2796 94.464 0 0 0 15.895679782898867 47.8885385120045 15.895679782898867 14.260912590556813 0 3 0 1.1133643341304673 1.9436726795685342 + + {[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ANY{M(Oxidation (M))|F}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}{I|L}R{I|L};[YQ][SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AGGY{M(Oxidation (M))|F}R{I|L}{I|L};[YQ][SG]Y{M(Oxidation (M))|F}R{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}{I|L}R{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[SG]Y{M(Oxidation (M))|F}R{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[RV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}QS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[WD]{[HG]|PP}{I|L}R{I|L} 8.2796;7.0348;6.1499;5.9471;5.2758;4.7022;4.403;3.5289;3.0318;2.3592 +;-;-;-;-;-;-;-;-;- + 2709 NaN NaN 217891.3 NaN 12250 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15684 68.131 NaN 759290 35 0 68383 0.261 + 7688 FYLEGGFSKF 10 84 597.7949633388251 1193.5753737444502 2 598.7987060546875 MULTI HCD FTMS 0 0 0 15677 199631.625 0.19600843360585007 16 -0.429290771484375 7 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 65.47368725323818 0.022948616544343086 2 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 2 + 55.125 0 0 4.6185 4.6185 84.806 0 0 0 19.94756724302873 4.669373426739497 4.669373426739497 7.4390759145567245 0 2.4247425010840047 1.2218487496163564 0.3252574989159953 0.28872548999643577 [Y{M(Oxidation (M))|F}]{I|L}EN{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{M(Oxidation (M))|F}]{I|L}[YN]A{I|L}YQ;[Y{M(Oxidation (M))|F}]{I|L}EGG{M(Oxidation (M))|F}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{M(Oxidation (M))|F}]{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[DG]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]{M(Oxidation (M))|F}[YN]A{I|L}YQ;[KS]{M(Oxidation (M))|F}N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[YE];{[QN]|[E{I|L}]|[KN]}{[RE]|[WV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YQ;[Y{M(Oxidation (M))|F}][Q{I|L}]T[{M(Oxidation (M))|F}T]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[KS]{M(Oxidation (M))|F}GG{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[YE];[Y{M(Oxidation (M))|F}][Q{I|L}]T{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{M(Oxidation (M))|F}T] 4.6185;3.9952;3.847;3.1812;2.1598;1.9573;1.3889;1.2411;1.1859;0.62206 -;-;+;-;-;-;-;-;-;- + 954 + NaN NaN 198935.3 NaN 12251 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15685 68.135 NaN 307190 35 0 35773 0.261 -1 DPNLEFVAM 9 51 526.2421423770343 1050.4697318208684 2 526.2418212890625 MULTI HCD FTMS 0 0 0 15677 148411.6875 0.8179185278625906 -4 0.0911712646484375 8 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 38.175570920033316 0.07371992880350783 2 WE{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 6 -1 63.008 0 0 5.9981 0 0 253.11079734996844 0 253.11079734996844 0 53.7113751626007 0 0 0 2.4247425010840047 0 0 0 WE{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.9981 - 81 + NaN NaN 150159.8 NaN 12252 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15686 68.138 NaN 234950 35 0 29494 0.261 + 29589 VAEHYLIQL 9 66 543.3029854467579 1084.5914179603158 2 543.3034057617188 MULTI HCD FTMS 0 0 0 15677 145138.90625 0.08559881842190217 18 -0.48162841796875 9 Unmodified _VAEHYLIQL_ REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF 29.081581746732265 0.1154664336125038 2 {I|L}{I|L}Q{I|L} 4 -1 47.735 0 0 4.4012 0 0 599.2711659162125 0 599.2711659162125 0 42.250547101681875 0 0 0 1.2302046884880937 0 0 0.3494850021680094 {I|L}{I|L}Q{I|L} 4.4012 + + 34 NaN NaN 118007.2 NaN 12253 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15687 68.141 NaN 205670 35 0 65168 0.261 -1 0 49 642.3169775632982 1282.6194021933964 2 642.316650390625 MULTI HCD FTMS 0 0 0 15677 104064.6328125 0.8185047220671171 -5 0.10736083984375 10 NaN NaN 2 WD{I|L}{I|L} 4 -1 31.938 0 0 2.4901 0 0 737.3525257794937 0 737.3525257794937 0 31.938200260161125 0 0 0 0.5 0 0 0 WD{I|L}{I|L} 2.4901 - 7 NaN NaN 122210.1 NaN 12254 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15688 68.145 NaN 138910 35 0 6210.8 0.263 + 4960 FASSFKIVL 9 57 506.29760524226754 1010.5806575513351 2 506.7988586425781 MULTI HCD FTMS 0 0 0 15677 28742.46875 0.17273160409984475 14 -0.37359619140625 11 Unmodified _FASSFKIVL_ ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 5.731851221503515 0.3075653528928475 2 S{I|L} 2 7 25.969 0 0 2.5697 0 0 792.4732468048803 0 792.4732468048803 0 21.989700043360187 0 0 0 0.5 0 0 0 S{I|L} 2.5697 - 24 NaN NaN 118927.7 NaN 12255 3431 15677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15690 68.149 NaN 267680 35 0 42435 0.327 + 19699 NYAAALETF 9 51 500.2423635899525 998.470174246705 2 500.2425537109375 MULTI HCD FTMS 0 0 0 15689 61905.046875 0.23542586347767958 1 -0.019561767578125 1 Unmodified _NYAAALETF_ ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF;nc|ENSG00000165416|Q9Y2Z0|SUGT1 53.832793166522166 0.026208976789938845 2 {I|L}ET{M(Oxidation (M))|F} 4 5 49.24 0 0 4.9316 0 0 490.21811591146565 0 490.21811591146565 0 7.368259515630768 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + {I|L}ET{M(Oxidation (M))|F} 4.9316 + + 215 + NaN NaN 124502.1 NaN 12256 3432 15689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15691 68.154 NaN 318170 35 0 30180 0.261 + 31401 VYAKYWIYV 9 72 602.8235460730018 1203.6325392128035 2 602.8231811523438 MULTI HCD FTMS 0 0 0 15689 76283.7421875 0.29029463526639937 3 -0.085235595703125 2 Unmodified _VYAKYWIYV_ ENSG00000103335|ENST00000301015|PIEZO1 34.10243960390752 0.09241788333544565 2 [YV][KA][WY]{I|L}YV 9 0 + 42.386 0 0 3.5215 3.5215 86.286 0 0 0 3.652836790932419 28.017231094384798 3.652836790932419 10.937492820425799 0 1.305462187404089 1.6989700043360187 0 0 + + [YV][KA][WY]{I|L}YV;[Y{I|L}]KG[WY]{I|L}YV;{NN|[MP]|[D{I|L}]|[EV]}P{[ET]|[MV]}{I|L}AA{I|L}YV;{NN|[MP]|[D{I|L}]|[EV]}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[NP]KYV;{NN|[MP]|[D{I|L}]|[EV]}PQQ[KT]{I|L}YV;{NN|[MP]|[D{I|L}]|[EV]}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[NP]YKV 3.5215;2.6128;1.4807;1.3684;0.93439;0.55657 +;-;-;-;-;- + 469 NaN NaN 139254.1 NaN 12257 3432 15689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15692 68.157 NaN 252690 35 0 17310 0.262 + 22263 QPDDLINQL 9 71 528.2718005674051 1054.52904820161 2 528.271728515625 MULTI HCD FTMS 0 0 0 15689 47628.69921875 0.30965292918773313 8 -0.20641326904296875 3 Unmodified _QPDDLINQL_ ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF 38.175570920033316 0.07371992880350783 2 S[C(Carbamidomethyl (C))R]{I|L}NQ{I|L} 7 5 43.356 0 0 4.1114 0 0 165.0788288800797 0 165.0788288800797 0 26.36607162635093 0 0 0 1.1747425010840047 0 0.6989700043360187 0.6694451763165201 S[C(Carbamidomethyl (C))R]{I|L}NQ{I|L} 4.1114 - 161 NaN NaN 130162.8 NaN 12258 3432 15689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15693 68.161 NaN 353710 35 0 23590 0.261 + -1 FDKLDQLSSM 10 79 600.2839785149785 1198.5534040967568 2 600.7673950195312 MULTI HCD FTMS 0 0 0 15689 23268.29296875 0.13451449988564418 17 -0.442138671875 4 Oxidation (M) _FDKLDQLSSM(Oxidation (M))_ REV__ENST00000432518.6_2_3:28798427-28798894:+|nuORF 10.073929032068715 0.4168838835836452 2 [YV]{M(Oxidation (M))|F} 3 -1 18.785 0 0 1.5673 0 0 0 786.3325538372443 786.3325538372443 0.9936247538460918 0 0 0 0 0 1.5228787452803376 0 0 [YV]{M(Oxidation (M))|F} 1.5673 - 75 NaN NaN 166221.5 NaN 12259 3432 15689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15694 68.164 NaN 1004900 35 0 173420 0.261 + 9288 HPNIVSLQDVL 11 78 617.8433258610492 1233.6720987888982 2 617.8436889648438 MULTI HCD FTMS 0 0 0 15689 87963.484375 0.19169352125644068 -3 0.10163116455078125 5 Unmodified _HPNIVSLQDVL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 31.461819360018414 0.19193863146671417 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VS{I|L}QDV{I|L} 11 0 + 50.2 0 0 4.0692 4.0692 84.802 0 0 0 0.5281981190647755 43.824351904289244 0.5281981190647755 9.128498242810998 0 1.9005149978319906 0 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VS{I|L}QDV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VS{I|L}[AG]DV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VS{I|L}[WR]{I|L} 4.0692;3.3292;1.916 +;-;- + 454 NaN NaN 247062.9 NaN 12260 3432 15689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15696 68.169 NaN 698890 35 0 191830 0.327 + 2634 DVASVIVTKL 10 67 522.8184960103958 1043.6224390875916 2 522.8187255859375 MULTI HCD FTMS 0 0 0 15695 352152.5625 0.4821558947972656 4 -0.11821746826171875 1 Unmodified _DVASVIVTKL_ ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54 75.5705956163825 0.010984675281887875 2 [DV]ASV{I|L}VTK{I|L} 10 0 + 87.991 0 0 8.4313 8.4313 96.48 0 0 0 21.8740810491245 69.57477699397336 21.8740810491245 32.034021960761265 0 1.7051120522087029 1.6989700043360187 1.5356668758921828 0 + + [DV]ASV{I|L}VTK{I|L};[VS]{[DA]|[EG]}V{I|L}VTK{I|L};[KT]V{I|L}[VS]A[DV]{I|L} 8.4313;5.3618;2.9611 +;-;- + 193 NaN NaN 193688.1 NaN 12261 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15697 68.173 NaN 253160 35 0 55433 0.261 + 8653 HFDMAVYL 8 46 498.23634911282386 994.4581452924477 2 498.2364196777344 MULTI HCD FTMS 0 0 0 15695 200866.875 1 0 0 2 Unmodified _HFDMAVYL_ ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant 13.50788311687929 0.4944073034352369 2 VY{I|L} 3 5 33.94 0 0 3.4129 0 0 601.2319813459 0 601.2319813459 0 14.47621246364342 0 0 0 0.9247425010840047 0 0 0 + VY{I|L} 3.4129 + + 21 NaN NaN 131936.2 NaN 12262 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15698 68.177 NaN 351590 35 0 35232 0.261 + 5960 FPDPWNAKF 9 78 561.2750866544988 1120.5356203757974 2 561.2890014648438 MULTI HCD FTMS 0 0 0 15695 23205.212890625 0.4181439640085052 -3 0.08190155029296875 3 Unmodified _FPDPWNAKF_ ENST00000568654.1_1_18:33760351-33767288:-|nuORF 9.38312468134398 0.279288223203164 2 T[K{I|L}]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 7 8 30.208 0 0 2.6958 0 0 310.0991921364271 0 310.0991921364271 0 5.426288272058883 0 0 0 0 0 0.3252574989159953 0 T[K{I|L}]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 2.6958 - 161 NaN NaN 145754.2 NaN 12263 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15699 68.18 NaN 238010 35 0 50470 0.261 -1 EPIPYEFMA 9 57 556.7519257552318 1111.4892985772635 2 556.751953125 MULTI HCD FTMS 0 0 0 15695 97665.6015625 0.5634090410470437 3 -0.0853729248046875 4 Oxidation (M) _EPIPYEFM(Oxidation (M))A_ ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF 37.97399986684836 0.07464525285885698 2 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4 -1 44.826 0 0 4.0329 0 0 599.293260642775 0 599.293260642775 0 38.5936186512318 0 0 0 1.2614393726401687 0 0.805462187404089 0 E{M(Oxidation (M))|F}{M(Oxidation (M))|F}A 4.0329 + + 74 NaN NaN 128679.8 NaN 12264 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15700 68.184 NaN 129000 35 0 23523 0.261 + 1959 DAINDANLL 9 39 479.74567906022276 NaN 0 479.7456970214844 PEAK HCD FTMS 0 0 0 15695 108866.2421875 0.5982743360020278 2 -0.065673828125 5 Unmodified _DAINDANLL_ ENSG00000160752|ENST00000368356|FDPS;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 47.594388314883695 0.053919811388395404 2 {I|L}NA[DN]{I|L} 6 4 39.966 0 0 4.1741 0 0 131.09485284293822 183.04122339420158 314.13607623713983 0 0 0 0 0 1.8807196863200843 0 0 0.4247425010840047 {I|L}NA[DN]{I|L} 4.1741 - 38 + NaN NaN 114599.1 NaN 12265 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15701 68.187 NaN 144150 35 0 8317.5 0.261 + 28771 TTKEIRGII 9 48 515.8187508215843 NaN 0 515.819091796875 PEAK HCD FTMS 0 0 0 15695 48146.62109375 0.9219152595821172 2 -0.065673828125 6 Unmodified _TTKEIRGII_ REV__tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1 9.38312468134398 0.24977752951804 2 {I|L} 1 -1 11.237 0 0 1.0914 0 0 131.09560497600813 782.4208400239697 913.5164449999779 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.0914 + + 4 + NaN NaN 106998.4 NaN 12266 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15702 68.19 NaN 239500 35 0 24197 0.261 + 16625 LVVSWLPVL 9 73 513.3219605713116 1024.629368209423 2 513.3212890625 MULTI HCD FTMS 0 0 0 15695 66071.78125 1 0 0 7 Unmodified _LVVSWLPVL_ ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 18.13498045792455 0.20367413111508956 2 VEV{I|L} 4 6 29.143 0 0 2.8443 0 0 566.3539906232437 0 566.3539906232437 0 11.238350322034233 0 0 0 0.3252574989159953 0 0.3494850021680094 0 VEV{I|L} 2.8443 - 94 NaN NaN 124323.5 NaN 12267 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15703 68.194 NaN 313740 35 0 26561 0.261 -1 MYDSFWRQF 9 70 648.2806742477159 1294.5467955622316 2 648.7837524414062 MULTI HCD FTMS 0 0 0 15695 48051.7734375 0.7107932603328693 3 -0.0853729248046875 8 Oxidation (M) _M(Oxidation (M))YDSFWRQF_ ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF;nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1 19.361941925380144 0.1930734562688509 2 EYWDDQ{M(Oxidation (M))|F} 7 -1 26.675 0 0 2.0606 0 0 293.17366225410314 0 293.17366225410314 0 16.753282428895275 0 0 0 0 0 0 0 EYWDDQ{M(Oxidation (M))|F} 2.0606 - 302 NaN NaN 137822.5 NaN 12268 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15704 68.197 NaN 98871 35 0 4715.5 0.261 + 22478 QRGWPFAAIFP 11 43 645.3422417386765 1288.669930544153 2 645.3427734375 MULTI HCD FTMS 0 0 0 15695 23468.615234375 0.20472209837812008 11 -0.28833770751953125 9 Unmodified _QRGWPFAAIFP_ REV__ENST00000292174.4_1_11:118765378-118765417:+|nuORF 2.735195868890462 0.4069250265843076 2 TH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 4 -1 13.812 0 0 1.0718 0 0 788.4335804669937 0 788.4335804669937 0 13.812281309285623 0 0 0 0 0 0 0 TH{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.0718 - 4 NaN NaN 119714.8 NaN 12269 3433 15695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15706 68.202 NaN 1197800 35 0 145250 0.327 + 12915 KYGIVQEFF 9 104 565.7976041113005 1129.580655289401 2 565.7977905273438 MULTI HCD FTMS 0 0 0 15705 627390.375 0.5645408850758349 3 -0.08536529541015625 1 Unmodified _KYGIVQEFF_ ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2 121.5340881639634 0.001118397630175091 2 [Y{I|L}]GKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 85.575 0 0 7.5758 7.5758 88.899 0 0 0 9.573711727941117 16.478174818886373 9.573711727941117 5.440680443502757 0 2.138210492164445 1.0969100130080565 0.2302046884880938 0.6307196863200843 [Y{I|L}]GKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]KGVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GKV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}VQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GVKQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SKVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]{I|L}GVQE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]KGV[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YK]G{I|L}V[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GVK[AG]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.5758;7.0941;6.7606;6.7282;6.6668;6.6435;6.4968;6.279;5.9131;5.8516 -;-;-;+;-;-;-;-;-;- + 5261 NaN NaN 269952 NaN 12270 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15707 68.206 NaN 812030 35 0 209970 0.261 + 12339 KMRAEDGENY 10 77 606.7694727573785 1211.5243925815569 2 607.2877197265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KMRAEDGENY_ ENSG00000171530|ENST00000380377|TBCA;ENST00000436520.1_1_X:33059580-33059835:+|nuORF;nc|ENSG00000171530|O75347-2|TBCA 12.240655878213236 0.39661705172222156 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 8 7 40.399 0 0 3.3346 0 0 112.04831212851748 0 112.04831212851748 0 14.961214824547255 0 0 0 0.3494850021680094 0 0.3494850021680094 0.3054621874040891 {M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHP{M(Oxidation (M))|F}Y 3.3346 - 744 + NaN NaN 211677.4 NaN 12271 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15708 68.21 NaN 758660 35 0 82066 0.261 + 13249 KYMDIEFDF 9 76 612.2680622783852 1222.5215716235703 2 612.2684326171875 MULTI HCD FTMS 0 0 0 15705 357806.0625 0.11711104339573067 32 -0.8271942138671875 3 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 76.82478488871298 0.006879825292024087 2 E{M(Oxidation (M))|F}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 66.789 0 0 5.4632 0 0 262.09520050989 0 262.09520050989 0 47.12343876753387 0 0 0 1.5 0 1.360924374808178 0 E{M(Oxidation (M))|F}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.4632 - 481 NaN NaN 204493.8 NaN 12272 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15709 68.213 NaN 1335600 35 0 129340 0.261 + 33134 YEEFITAGTF 10 93 589.274370218589 1176.5341875039778 2 590.2984619140625 MULTI HCD FTMS 0 0 0 15705 58275.53515625 0.21774718100675386 10 -0.25548553466796875 4 Unmodified _YEEFITAGTF_ REV__ENSG00000116406|ENST00000318130|EDEM3;REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF;REV__nc|ENSG00000116406|Q9BZQ6-2|EDEM3 36.12702656103203 0.1790159924230938 2 TTQT{I|L}{I|L}YE{M(Oxidation (M))|F} 9 -1 72.828 0 0 6.19 0 0 61.96969623052684 0 61.96969623052684 0 27.301726208774042 0 0 0 0.9757724967479859 0 2.0356668758921828 0.3494850021680094 TTQT{I|L}{I|L}YE{M(Oxidation (M))|F} 6.19 - 6172 + NaN NaN 294330 NaN 12273 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15710 68.217 NaN 730110 35 0 217820 0.261 + 25808 SLPEDFYHF 9 73 577.7613356029801 1153.5081182727602 2 577.761474609375 MULTI HCD FTMS 0 0 0 15705 227843.84375 0.8464487362946992 -1 0.0328521728515625 5 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 20.453626601364224 0.18364154288633264 2 {[TV]|[{I|L}S]}V 3 7 27.447 0 0 2.3795 0 0 0 851.2996276323883 851.2996276323883 2.9114872296680936 0 0 0 0 0.5 2 0 0 {[TV]|[{I|L}S]}V 2.3795 - 348 NaN NaN 209462.5 NaN 12274 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15711 68.22 NaN 657670 35 0 44139 0.261 + 22964 QYVYWLHML 9 90 634.8101208564551 1267.6056887797101 2 634.8109130859375 MULTI HCD FTMS 0 0 0 15705 209913.234375 0.47731737799535645 -1 0.0328521728515625 6 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 153.26226096763125 5.377622955406631E-06 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L} 10 8 + 81.903 0 0 6.4612 6.4612 88.202 0 0 0 9.713110756016974 13.404980919043936 9.713110756016974 8.520599913279625 0 1.622363747448347 1.3979400086720375 0.805462187404089 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV[CG]{I|L};[YQ]VYW{I|L}H{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]VC(Carbamidomethyl (C)){I|L} 6.4612;5.789;5.7382;5.695;5.4887;5.0661;4.8778;4.7657;4.6137;4.3133 -;-;-;+;-;-;-;-;-;- + 964 NaN NaN 191070.8 NaN 12275 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15712 68.223 NaN 255180 35 0 49330 0.261 -1 KYMDVQFDF 9 51 604.7681072670384 1207.5216616008768 2 604.7689208984375 MULTI HCD FTMS 0 0 0 15705 85257.640625 0.02488948798737333 114 -2.9097442626953125 7 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 28.494509381512117 0.11816142465008336 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.8248 0 0 666.3042076017421 0 666.3042076017421 0 37.23320034371433 0 0 0 1.4247425010840047 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.8248 - 89 NaN NaN 136379.6 NaN 12276 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15713 68.226 NaN 246370 35 0 16135 0.261 + 27128 SYMGHFDLL 9 72 541.7523669874173 1081.4901810416345 2 541.7523803710938 MULTI HCD FTMS 0 0 0 15705 64751.2109375 0.01530164976762014 40 -1.02752685546875 8 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 34.10243960390752 0.09241788333544565 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HQ][Y{M(Oxidation (M))|F}]{I|L} 8 5 + 30.691 0 0 2.8379 2.8379 80.525 0 0 0 1.2050654486819212 13.947836874485624 1.2050654486819212 1.1696288114102629 0 0.2742275032520141 1.3010299956639813 0 0.3054621874040891 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[HQ][Y{M(Oxidation (M))|F}]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DG[HA][Y{M(Oxidation (M))|F}]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DG{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}KN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[W{I|L}]{M(Oxidation (M))|F}KN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[WE]{[CA]|SS}[KA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DG{[QN]|[E{I|L}]|[KN]}[CS][KA];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[W{I|L}][CS][KA];{[{M(Oxidation (M))|F}C]|[YS]}[QP][QA]{M(Oxidation (M))|F}E{I|L} 2.8379;2.7297;2.6672;2.4929;2.3335;1.617;1.4377;0.83029 -;-;-;-;-;-;-;- 298 NaN NaN 127791.2 NaN 12277 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15714 68.23 NaN 238960 35 0 17514 0.261 + 31695 VYKVPPFTF 9 76 549.3049660462365 1096.5953791592729 2 549.3052978515625 MULTI HCD FTMS 0 0 0 15705 79076.7578125 0.7820269605404099 1 -0.0328216552734375 9 Unmodified _VYKVPPFTF_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 57.72198328787511 0.020768266150574023 2 VYKVP{M(Oxidation (M))|F}PT{M(Oxidation (M))|F} 9 2 + 89.536 0 0 8.1649 8.1649 90.442 0 0 0 11.906140654642812 11.906140654642812 11.906140654642812 6.73393743112328 0 2.3494850021680094 2 0.6989700043360187 0 VYKVP{M(Oxidation (M))|F}PT{M(Oxidation (M))|F};VYKVP{M(Oxidation (M))|F}TP{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}PVKP{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}PVKP{M(Oxidation (M))|F} 8.1649;7.5508;7.0792;5.3681 -;-;-;- 284 + NaN NaN 122484.3 NaN 12278 3434 15705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15716 68.235 NaN 758960 35 0 45011 0.327 + 6355 FPFYYEIKM 9 79 627.298453891388 1252.582354849576 2 627.2991943359375 MULTI HCD FTMS 0 0 0 15715 382017.28125 0.40425424616409045 11 -0.2783966064453125 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 68.075 0 0 5.4347 5.4347 83.043 0 0 0 0.2557626122369072 0.0883956381603781 0.0883956381603781 0.0883956381603781 0 2.353917193908117 0 0.5941876774005248 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]P{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]PKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYT{I|L}[VG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]PYKY{M(Oxidation (M))|F}PE 5.4347;5.4277;5.4143;5.0321;4.6262;4.0566;3.6824;3.3049;3.2964;3.1381 +;+;-;-;-;-;-;-;-;- + 2766 + NaN NaN 223623 NaN 12279 3435 15715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15717 68.239 NaN 516630 35 0 210460 0.264 + 24472 RYLDSLKAIVF 11 39 442.2589116453977 1323.7549055363932 3 442.259033203125 MULTI HCD FTMS 0 0 0 15715 199647.015625 1 0 0 2 Unmodified _RYLDSLKAIVF_ ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN 11.631370582801994 0.35573789852458537 2 V{M(Oxidation (M))|F} 2 9 30.969 0 0 2.3395 0 0 1059.6075189170556 0 1059.6075189170556 0 27.870156338638594 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3395 + + 6 + NaN NaN 184967.1 NaN 12280 3435 15715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15718 68.243 NaN 387640 35 0 134840 0.261 + 25770 SLELGHVLI 9 52 490.792350640462 979.5701483477241 2 490.79248046875 MULTI HCD FTMS 0 0 0 15715 187153.453125 0.4204753049737727 4 -0.10162353515625 3 Unmodified _SLELGHVLI_ ENSG00000179532|ENST00000254579|DNHD1;ENST00000525883.5_1_11:6587352-6591461:+|nuORF;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF 11.640296217721598 0.25978676193971967 2 MV{I|L}{I|L} 4 6 35.979 0 0 3.6729 0 0 505.2948170392594 0 505.2948170392594 0 25.00956171512948 0 0 0 0.9247425010840047 0 0 0 MV{I|L}{I|L} 3.6729 - 33 NaN NaN 158464.9 NaN 12281 3435 15715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15719 68.246 NaN 975290 35 0 75743 0.261 + 13115 KYLGLLENL 9 96 531.8127071812421 1061.6108614292841 2 531.8133544921875 MULTI HCD FTMS 0 0 0 15715 306765.25 1 0 0 4 Unmodified _KYLGLLENL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 55.23464941255904 0.024247875903973527 2 [YK]{I|L}G{I|L}{I|L}EN{I|L} 9 0 + 57.349 0 0 5.4021 5.4021 86.519 0 0 0 4.137342758552691 29.902084879686655 4.137342758552691 8.772212521792746 0 2.079689690656103 0 0 0 + + [YK]{I|L}G{I|L}{I|L}EN{I|L};{I|L}[YK]G{I|L}{I|L}EN{I|L};[YK]{I|L}G{I|L}{I|L}EGG{I|L};{I|L}[YK]G{I|L}{I|L}QD{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Q{I|L}][WR]{I|L} 5.4021;4.5758;4.5347;3.5923;2.4363 +;-;-;-;- + 809 NaN NaN 244475 NaN 12282 3435 15715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15720 68.25 NaN 350890 35 0 50358 0.261 + 18717 MYPYIYHVL 9 68 599.8005679980472 1197.5865830628943 2 599.8019409179688 MULTI HCD FTMS 0 0 0 15715 106772.5546875 0.9607410286980435 2 -0.05254364013671875 5 Unmodified _MYPYIYHVL_ ENSG00000184083|ENST00000375180|FAM120C 28.173230860318316 0.11963627304438548 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}P 3 6 37.447 0 0 3.1269 0 0 0 803.4117525690061 803.4117525690061 3.7628749457997657 0 0 0 0 0.6989700043360187 2 0 0 + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}P 3.1269 + + 217 + NaN NaN 144470.1 NaN 12283 3435 15715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15722 68.254 NaN 1855500 35 0 589690 0.327 + 24618 RYLPTGSFPF 10 65 592.8085510866069 1183.6025492400138 2 592.8088989257812 MULTI HCD FTMS 0 0 0 15721 1298295.75 0.2031199263365176 12 -0.31105804443359375 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 78.06048673739656 0.008034375046376557 2 [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 89.703 0 0 7.5788 7.5788 95.094 0 0 0 4.884381005764311 78.73380636665303 4.884381005764311 31.792199224104678 0 2.579689690656103 0 1.2302046884880937 0 + + [YR]{I|L}PTGS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}STP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT[YQ]P{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]GTP{I|L}GP{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR]TP{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}PT{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR]{I|L}PQ[YT]P{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[WQ]E[YV];[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 7.5788;4.8927;4.7585;4.516;4.1954;2.0341;1.5238;1.1714;0.3487 +;-;-;-;-;-;-;-;- + 354 NaN NaN 373228.1 NaN 12284 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15723 68.259 NaN 1432000 35 0 178710 0.261 + 1170 AYLESFYKF 9 85 584.2894496602338 1166.5643463872675 2 584.289794921875 MULTI HCD FTMS 0 0 0 15721 1171438.625 0.053979675161265527 21 -0.5536422729492188 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 147.05914393524117 1.1935124485855994E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 117.3 0 0 10.055 10.055 95.535 0 0 0 25.642492736872597 89.7240242381119 25.642492736872597 11.721675119240516 0 3.3494850021680094 2 1.6976212463643423 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}SY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYS{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 10.055;9.0507;8.9598;8.8867;8.832;7.955;7.8819;7.8272;7.7363;7.4461 +;-;-;-;-;-;-;-;-;- + 4039 NaN NaN 325202.9 NaN 12285 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15724 68.262 NaN 1229000 35 0 196920 0.261 + 9848 HYSPIYLSF 9 81 563.7819291863159 1125.5493054394317 2 563.7824096679688 MULTI HCD FTMS 0 0 0 15721 848337.875 0.9572413036315547 -1 0.0196990966796875 3 Unmodified _HYSPIYLSF_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 88.90359156742426 0.00455469703666567 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F} 9 4 + 87.56 0 0 7.7793 7.7793 93.909 0 0 0 19.621892823592972 68.41805264274505 19.621892823592972 15.268024924119672 0 1.9247425010840047 1.3979400086720375 0.75 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}PH;{[WN]|[YH]}S[{I|L}P]Y{I|L}S{M(Oxidation (M))|F};{[WN]|[YH]}[{I|L}P]SY{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}YSY{I|L}PH;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YS[{I|L}P]YH;{[TV]|[{I|L}S]}{M(Oxidation (M))|F}YS[{I|L}P]YH;{[WN]|[YH]}S[KC][RV]PH 7.7793;6.4228;5.2843;5.1388;4.9133;3.5794;2.07;0.79781 -;-;+;-;-;-;-;- + 410 NaN NaN 278394.6 NaN 12286 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15725 68.266 NaN 1706800 35 0 184990 0.261 + 1240 AYLPVNESF 9 99 520.2583165611793 1038.5020801891585 2 520.2586669921875 MULTI HCD FTMS 0 0 0 15721 634933.4375 0.36747982754707764 5 -0.1309051513671875 4 Unmodified _AYLPVNESF_ ENSG00000167658|ENST00000309311|EEF2 110.6747026088012 0.0028322563155251486 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F} 9 0 + 76.314 0 0 7.3485 7.3485 93.065 0 0 0 9.475439491672972 35.706860144551 9.475439491672972 15.00508444608478 0 2.584121882396211 1.6989700043360187 0.2614393726401688 0.5796896906561032 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGES{M(Oxidation (M))|F};[VP]Y[{I|L}A]NES{M(Oxidation (M))|F};[VP]YV[QA]ES{M(Oxidation (M))|F};[VP]Y[{I|L}A]GGES{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}[{I|L}A]GR{M(Oxidation (M))|F}C{I|L};{M(Oxidation (M))|F}{I|L}[Q{I|L}]R{M(Oxidation (M))|F}C{I|L};[K{I|L}]Q[C(Carbamidomethyl (C))K]{M(Oxidation (M))|F}C{I|L} 7.3485;5.9036;2.9271;1.8875;1.4823;1.3441;1.1797;0.71192 +;-;-;-;-;-;-;- + 1097 NaN NaN 346105.2 NaN 12287 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15726 68.269 NaN 1116000 35 0 86393 0.261 + 12536 KSFSYSNSFQ 10 103 597.7734806125873 NaN 0 597.7952270507812 PEAK HCD FTMS 0 0 0 15721 32516.5078125 0.703474880569282 3 -0.0819244384765625 5 Unmodified _KSFSYSNSFQ_ ENSG00000174652|ENST00000592904|ZNF266;nc|ENSG00000174652|Q14584|ZNF266 15.248480904072842 0.31912431859025153 2 Y{I|L}EN{M(Oxidation (M))|F}S 6 8 27.942 0 0 2.3411 0 0 147.02546567779342 290.15155969791255 437.17702537570597 0 0 0 0 0 0 0 1.4436726795685342 0 Y{I|L}EN{M(Oxidation (M))|F}S 2.3411 - 787 + NaN NaN 258501 NaN 12288 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15727 68.272 NaN 1410900 35 0 188700 0.261 + 31571 VYHQALVWSS 10 109 595.3012073150092 1188.5878616968182 2 595.3218994140625 MULTI HCD FTMS 0 0 0 15721 14410.73828125 0.16405158224451033 7 -0.18341064453125 6 Unmodified _VYHQALVWSS_ REV__nc|ENSG00000258597|P20848|SERPINA2 18.1463463914782 0.3413772152514074 2 {[{M(Oxidation (M))|F}D]|MM}V[HK]{I|L}AVN{M(Oxidation (M))|F} 10 -1 + 59.87 0 0 5.0371 5.0371 84.386 0 0 0 5.110534548150909 6.822537168505427 5.110534548150909 4.771212547196626 0 0.4247425010840047 0 0.2742275032520141 1.0484550065040281 {[{M(Oxidation (M))|F}D]|MM}V[HK]{I|L}AVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[HK]V{I|L}AVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[HK]{I|L}AVGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V[HK]{I|L}ANV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[HK]V{I|L}AVGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[HK]V{I|L}ANV{M(Oxidation (M))|F};YTNYVVAV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};YVNT[YV]AV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};YTPQH{I|L}AV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[NV]|[RG]}A{[QD]|[EN]|[WG]|[KD]|[RS]}V{I|L}AVN{M(Oxidation (M))|F} 5.0371;4.6357;4.266;4.2183;3.8646;3.8169;3.7454;3.6825;3.614;3.5447 -;-;-;-;-;-;-;-;-;- 3595 NaN NaN 305440.1 NaN 12289 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15728 68.276 NaN 741810 35 0 42189 0.261 + 32253 VYTVVDEMF 9 94 559.7575340496687 1117.5005151661373 2 559.7578735351562 MULTI HCD FTMS 0 0 0 15721 260410.515625 0.7738516621333366 -11 0.29117584228515625 7 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 139.54400939418784 2.61670173137287E-05 2 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 78.368 0 0 7.0127 7.0127 91.404 0 0 0 2.8246091534035145 2.8246091534035145 2.8246091534035145 10.805300040193003 0 2.1549471895720984 1.6989700043360187 1.9247425010840047 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]VT[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]SV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[{I|L}T]VD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.0127;6.0458;5.8855;2.969 +;-;-;- + 1012 NaN NaN 197815.2 NaN 12290 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15729 68.279 NaN 575420 35 0 65168 0.261 + 16417 LSKVMIIEN 9 80 523.7977295864689 1045.5809062397377 2 524.3135375976562 MULTI HCD FTMS 0 0 0 15721 23283.197265625 1 0 0 8 Unmodified _LSKVMIIEN_ ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR 13.90604991867851 0.24021115267848145 2 [YV]{I|L}D{[VA]|[{I|L}G]}VR 8 8 30.355 0 0 2.9031 0 0 0 127.0414433048851 127.0414433048851 -3.4037556512099414 0 -3.4037556512099414 0 0 0 1.6989700043360187 0 0 [YV]{I|L}D{[VA]|[{I|L}G]}VR 2.9031 - 493 NaN NaN 175181.6 NaN 12291 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15730 68.282 NaN 225220 35 0 31678 0.261 + 6694 FPNNVATVL 9 59 487.76896683087296 973.5233807285459 2 487.7692565917969 MULTI HCD FTMS 0 0 0 15721 118747.8671875 0.8990611267260066 -1 0.0196990966796875 9 Unmodified _FPNNVATVL_ ENSG00000146409|ENST00000275227|SLC18B1 36.12702656103203 0.08312389501731911 2 ATV{I|L} 4 5 51.186 0 0 5.2578 0 0 571.2762561718339 0 571.2762561718339 0 49.59183145787911 0 0 0 1.5 0 0.4247425010840047 0 + ATV{I|L} 5.2578 + + 72 NaN NaN 118158.6 NaN 12292 3436 15721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15732 68.287 NaN 540490 35 0 31825 0.327 + 6356 FPFYYEIKM 9 66 627.298453891388 1252.582354849576 2 627.2989501953125 MULTI HCD FTMS 0 0 0 15731 318070.8125 0.33658549716194874 13 -0.327239990234375 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 76.82478488871298 0.006879825292024087 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 85.319 0 0 6.8115 6.8115 88.086 0 0 0 7.940476344280981 6.747673207481824 6.747673207481824 6.747673207481824 0 2.7302046884880937 1.6989700043360187 0.6747425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YYKY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;[Y{M(Oxidation (M))|F}]PKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE 6.8115;6.2728;6.2717;6.1775;5.6954;5.6609;4.9258;4.7754;4.6044;4.2357 +;-;-;+;-;-;-;-;-;- + 1748 NaN NaN 170765.5 NaN 12293 3437 15731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15733 68.292 NaN 257230 35 0 20814 0.261 + 26691 SYANYFIRL 9 78 573.8012938186569 1145.5880347041136 2 573.8012084960938 MULTI HCD FTMS 0 0 0 15731 119970.265625 0.21191929106909752 13 -0.327239990234375 2 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 67.83816525789305 0.009787749748478139 2 {I|L}{M(Oxidation (M))|F}YNCS{I|L} 7 7 71.274 0 0 6.2216 0 0 287.1955738751969 0 287.1955738751969 0 43.08622918369565 0 0 0 1.9559771852360797 0 0 0.4247425010840047 {I|L}{M(Oxidation (M))|F}YNCS{I|L} 6.2216 - 725 NaN NaN 125739.9 NaN 12294 3437 15731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15734 68.295 NaN 262260 35 0 68766 0.261 -1 MEEQHVIHML 10 58 641.7997542830852 1281.5849556329704 2 642.3167724609375 MULTI HCD FTMS 0 0 0 15731 9979.646484375 0.32149114467450396 1 -0.019561767578125 3 Oxidation (M) _MEEQHVIHM(Oxidation (M))L_ ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1 4.3292370932331545 0.45238836448149167 2 VYW{I|L}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7 -1 26.503 0 0 2.068 0 0 305.09699284175787 0 305.09699284175787 0 17.038654110982492 0 0 0 0.3807196863200844 0 0 0 VYW{I|L}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.068 - 132 + NaN NaN 133571.8 NaN 12295 3437 15731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15735 68.299 NaN 217560 35 0 22768 0.262 -1 DPNLEFVAM 9 54 526.2421423770343 1050.4697318208684 2 526.2418212890625 MULTI HCD FTMS 0 0 0 15731 95782.2578125 0.527870039247112 2 -0.04907989501953125 4 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 31.26834338654808 0.10542797264966089 2 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 60.701 0 0 5.7785 0 0 439.20772117809344 0 439.20772117809344 0 55.21652514092061 0 0 0 2.4247425010840047 0 0 0 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.7785 + + 77 + NaN NaN 117229.4 NaN 12296 3437 15731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15736 68.302 NaN 258780 35 0 30846 0.261 + 5211 FFDAELSQM 9 64 552.2391290246032 1102.4637051160064 2 552.2390747070312 MULTI HCD FTMS 0 0 0 15731 101316.1875 0.028141782898473838 121 -3.1063232421875 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 43.981846655682396 0.04706587046877104 2 AE{I|L}SQ{M(Oxidation (M))|F} 6 3 51.961 0 0 4.7131 0 0 409.16414076972814 0 409.16414076972814 0 36.47608139917317 0 0 0 2.274227503252014 0 0 0 + AE{I|L}SQ{M(Oxidation (M))|F} 4.7131 + + 123 NaN NaN 128469.1 NaN 12297 3437 15731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15738 68.307 NaN 1570300 35 0 135800 0.327 + 12918 KYGLGFQII 9 104 519.8019054471085 1037.589257961017 2 519.802978515625 MULTI HCD FTMS 0 0 0 15737 402889.125 0.6121072777725394 1 -0.02951812744140625 1 Unmodified _KYGLGFQII_ ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 47.748688679222035 0.03472022231463587 2 [{M(Oxidation (M))|F}V][KQ]YQ{I|L}{I|L} 8 6 + 43.893 0 0 4.2302 4.2302 82.925 0 0 0 1.051113574857041 2.003187623076954 1.051113574857041 3.979400086720375 0 0.8807196863200843 1.2218487496163564 0 0.5242275032520141 [{M(Oxidation (M))|F}V][KQ]YQ{I|L}{I|L};[{M(Oxidation (M))|F}V][YQ]KQ{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KT]{[DS]|[MA]|[CV]|TT}K{I|L};[{M(Oxidation (M))|F}V][KQ]Y[AG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V[KA]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KT]{[DS]|[MA]|[CV]|TT}{I|L}K;[{M(Oxidation (M))|F}V][YQ]K[AG]{I|L}{I|L};[{M(Oxidation (M))|F}V][KS]PGYK{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V[{I|L}A]K{I|L};[{M(Oxidation (M))|F}V][KS]PGY{I|L}K 4.2302;3.8467;3.6897;3.3376;3.2608;2.9655;2.9541;2.7781;2.6148;2.054 -;-;-;-;-;-;-;-;-;- 1562 NaN NaN 340615.2 NaN 12298 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15739 68.311 NaN 749370 35 0 187070 0.261 + 9289 HPNIVSLQDVL 11 75 617.8433258610492 1233.6720987888982 2 617.8431396484375 MULTI HCD FTMS 0 0 0 15737 177185.0625 0.3861287304157853 3 -0.07849884033203125 2 Unmodified _HPNIVSLQDVL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 64.69154705217129 0.021088873631609245 2 [YT]A[KP]E{[SA]|[TG]}RV{I|L} 11 9 + 56.035 0 0 4.5421 4.5421 84.671 0 0 0 7.283474859079391 0.3694824752620107 0.3694824752620107 7.283474859079391 0 0.5 2 0.6861818737241735 0.3494850021680094 [YT]A[KP]E{[SA]|[TG]}RV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VS{I|L}QDV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VE[KA]DV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}VE{[SA]|[TG]}RV{I|L};[VS]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VE{[SA]|[TG]}RV{I|L} 4.5421;3.9518;3.1654;2.6381;2.3295 -;+;-;-;- + 665 NaN NaN 201641.2 NaN 12299 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15740 68.315 NaN 913950 35 0 256350 0.261 + 1383 AYPTVKFYF 9 92 568.294666035547 1134.574779137894 2 568.2946166992188 MULTI HCD FTMS 0 0 0 15737 229836.34375 0.47126809162310795 -3 0.07210540771484375 3 Unmodified _AYPTVKFYF_ ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10 60.07390631473393 0.0174780869009295 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTV[Y{M(Oxidation (M))|F}]K{M(Oxidation (M))|F} 9 2 + 41.862 0 0 3.6897 3.6897 83.854 0 0 0 12.821290465856308 18.93053421393809 12.821290465856308 7.816879883148104 0 2.004432191740108 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PTV[Y{M(Oxidation (M))|F}]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[QG]|[NA]}VTP{[ES]|[DT]|[{I|L}C]};[Y{I|L}]AA{[QG]|[NA]}VTP{[ES]|[DT]|[{I|L}C]};[YT][PA]V[Y{M(Oxidation (M))|F}]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[H{I|L}][YR]P{[ES]|[DT]|[{I|L}C]};[Y{I|L}]{M(Oxidation (M))|F}{I|L}NY[VG]{M(Oxidation (M))|F} 3.6897;3.0007;2.2284;1.9117;1.7522;1.1366 -;-;-;-;-;- 263 NaN NaN 232705.3 NaN 12300 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15741 68.318 NaN 146020 35 0 29558 0.261 -1 VPGYMHYL 8 27 498.23634911282386 994.4581452924477 2 498.2367858886719 MULTI HCD FTMS 0 0 0 15737 35553.78125 0.177001714443957 5 -0.13100433349609375 4 Oxidation (M) _VPGYM(Oxidation (M))HYL_ ENST00000457734.6_1_3:142430727-142430778:+|nuORF 6.354104778181461 0.5325651638111438 2 Y{I|L} 2 -1 25.969 0 0 2.6114 0 0 700.3001807783361 0 700.3001807783361 0 25.969100130080562 0 0 0 0.5 0 0 0 Y{I|L} 2.6114 + + 2 NaN NaN 99418.2 NaN 12301 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15742 68.321 NaN 367450 35 0 51432 0.261 + 4566 EYLLKAYVL 9 77 556.3234786183602 1110.6324043035204 2 556.3235473632812 MULTI HCD FTMS 0 0 0 15737 81905.9375 0.25119425545968627 -3 0.07210540771484375 5 Unmodified _EYLLKAYVL_ ENSG00000116406|ENST00000318130|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 99.79894945604345 0.0042691968066200965 2 [YE]{I|L}{I|L}KAYV{I|L} 9 0 + 74.637 0 0 6.7202 6.7202 94.889 0 0 0 17.003187623076947 14.973024840566467 14.973024840566467 74.63669386598376 0 2.385151878060192 1.3979400086720375 2.3494850021680094 0 + + [YE]{I|L}{I|L}KAYV{I|L} 6.7202 + + 390 NaN NaN 143685.7 NaN 12302 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15743 68.325 NaN 174250 35 0 11299 0.261 + 12959 KYIDYLMTW 9 56 624.8019484214649 1247.5893439097297 2 624.8027954101562 MULTI HCD FTMS 0 0 0 15737 82835.3515625 0.6925605227258848 2 -0.049072265625 6 Oxidation (M) _KYIDYLM(Oxidation (M))TW_ ENSG00000114978|ENST00000396049|MOB1A;ENSG00000173542|ENST00000309395|MOB1B;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF;nc|ENSG00000114978|Q9H8S9-2|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B 61.60191391372663 0.015340508911304802 2 DY{I|L}{M(Oxidation (M))|F}TW 6 3 64.513 0 0 5.171 0 0 404.2424488751969 0 404.2424488751969 0 51.66000644387189 0 0 0 2.1861818737241734 0 0 0 + DY{I|L}{M(Oxidation (M))|F}TW 5.171 + + 121 NaN NaN 117873.4 NaN 12303 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15744 68.328 NaN 308540 35 0 89878 0.261 -1 0 62 604.3538240165344 603.3465475499344 1 604.3545532226562 MULTI HCD FTMS 0 0 0 15737 66874.875 0.18453782286526205 -9 0.25897216796875 7 NaN NaN 2 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4 -1 18.06 0 0 2.9933 0 0 62.12982499309687 0 62.12982499309687 0 12.11758134947864 0 0 0 0 0 0.4247425010840047 0 N{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 2.9933 - 31 + NaN NaN 136105.2 NaN 12304 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15745 68.331 NaN 241900 35 0 91863 0.264 + 10241 IIIEEFGDIIF 11 38 436.90806517382003 1307.7023661216601 3 436.9081726074219 MULTI HCD FTMS 0 0 0 15737 35504.69140625 0.24120319118909456 -3 0.07210540771484375 8 Unmodified _IIIEEFGDIIF_ REV__ENSG00000173572|ENST00000342929|NLRP13;REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant 4.406150317652783 0.39959678800402487 2 {I|L}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.277 0 0 1029.5385504014666 0 1029.5385504014666 0 28.667053245199625 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.277 + + 4 NaN NaN 126034.1 NaN 12305 3438 15737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15747 68.336 NaN 318650 35 0 34125 0.327 + 31505 VYGDFQEAF 9 75 538.2410549714131 1074.467557009626 2 538.240966796875 MULTI HCD FTMS 0 0 0 15746 132351.640625 1 0 0 1 Unmodified _VYGDFQEAF_ ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A 49.55428908609986 0.03219431099695407 2 S{M(Oxidation (M))|F}QEA{M(Oxidation (M))|F} 6 4 66.745 0 0 6.2119 0 0 347.1481190412125 0 347.1481190412125 0 49.83410649039925 0 0 0 2.1861818737241734 0 0.3252574989159953 0.3494850021680094 S{M(Oxidation (M))|F}QEA{M(Oxidation (M))|F} 6.2119 - 154 NaN NaN 140014.5 NaN 12306 3439 15746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15748 68.341 NaN 328650 35 0 30894 0.261 + 13864 KYPVDLYYL 9 62 587.3131624667533 1172.6117720003065 2 587.8151245117188 MULTI HCD FTMS 0 0 0 15746 80638.078125 0.6086597528157153 -4 0.10162353515625 2 Unmodified _KYPVDLYYL_ ENSG00000105855|ENST00000222573|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF;nc|ENSG00000105855|P26012-2|ITGB8 43.77239144664712 0.04802738721622131 2 [YK][VP]D{I|L}YY{I|L} 9 0 + 56.889 0 0 4.8515 4.8515 91.029 0 0 0 3.6574248437336365 41.43175948177209 3.6574248437336365 42.99803764475705 0 2.1549471895720984 0 0.4247425010840047 0 + + [YK][VP]D{I|L}YY{I|L};[YK][VP]D[RH]MK 4.8515;1.1846 +;- + 97 NaN NaN 139137.1 NaN 12307 3439 15746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15749 68.344 NaN 76291 35 0 6530 0.262 + 1960 DAINDANLL 9 43 479.74567906022276 NaN 0 479.74554443359375 PEAK HCD FTMS 0 0 0 15746 7911.8681640625 0.04347966437784854 8 -0.20294189453125 3 Unmodified _DAINDANLL_ ENSG00000160752|ENST00000368356|FDPS;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS 8.155526934196011 0.2557262968844962 2 {I|L} 1 8 6.9897 0 0 0.73001 0 0 131.09534270910132 710.2741793268186 841.36952203592 0 0 0 0 0 0 0 0 0 + {I|L} 0.73001 + + 6 + NaN NaN 93930.6 NaN 12308 3439 15746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15750 68.348 NaN 114470 35 0 7027.7 0.261 + 5625 FMCHRRQAI 9 57 581.2926302349981 NaN 0 581.2922973632812 PEAK HCD FTMS 0 0 0 15746 27496.75 0.8888927052934513 1 -0.01955413818359375 4 Unmodified _FMCHRRQAI_ ENSG00000126856|ENST00000449207|PRDM7;ENSG00000164256|ENST00000296682|PRDM9 7.289230182591677 0.2599242500475609 2 {I|L} 1 8 5.4846 0 0 0.47257 0 0 148.14262023386487 896.3191012018186 1044.4617214356836 0 0 0 0 0 0 0 0 0 + {I|L} 0.47257 + + 3 + NaN NaN 102720.7 NaN 12309 3439 15746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15751 68.351 NaN 155570 35 0 21438 0.263 + 21796 QAKAQYLREVY 11 58 456.9131060296532 NaN 0 456.9127502441406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QAKAQYLREVY_ ENST00000479014.1_1_7:87005212-87011518:+|nuORF 1.4551175022131473 0.3379923941668102 2 H 1 11 3.9794 0 0 0.43643 0 0 190.4208643036439 581.2965792291624 771.7174435328063 0 0 0 0 0 0 0 0 0 H 0.43643 - 3 + NaN NaN 117032 NaN 12310 3439 15746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15753 68.356 NaN 867410 35 0 81437 0.327 + 15395 LPDGTSLTQTF 11 90 590.2982271285277 1178.5819013238554 2 590.298583984375 MULTI HCD FTMS 0 0 0 15752 381199.84375 0.48310368103738066 4 -0.1014862060546875 1 Unmodified _LPDGTSLTQTF_ ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1 110.79276546118962 0.019556750327100733 2 S{I|L}TQT{M(Oxidation (M))|F} 6 5 69.94 0 0 5.9343 0 0 483.23257504901477 0 483.23257504901477 0 18.1190578324993 0 0 0 2.0114393726401687 0 1.566901560044258 0 + S{I|L}TQT{M(Oxidation (M))|F} 5.9343 + + 4175 NaN NaN 233681.7 NaN 12311 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15754 68.36 NaN 604160 35 0 153390 0.261 + 10078 IFFENHPYF 9 76 607.2872616918412 1212.5599704504823 2 607.2876586914062 MULTI HCD FTMS 0 0 0 15752 284111.53125 0.11998747436089784 18 -0.465057373046875 2 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 82.5293158979368 0.005033931517079822 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENH 6 3 62.925 0 0 5.1894 0 0 0 422.17161065089084 422.17161065089084 30.809159218443796 0 0 0 0 1.6989700043360187 0 0.2742275032520141 0.3807196863200844 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENH 5.1894 + + 341 + NaN NaN 188985.5 NaN 12312 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15755 68.364 NaN 757050 35 0 49515 0.261 + 22965 QYVYWLHML 9 91 634.8101208564551 1267.6056887797101 2 634.810302734375 MULTI HCD FTMS 0 0 0 15752 268576.0625 0.6107095740128556 5 -0.12769317626953125 3 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 114.94377779790601 0.0021353177819039447 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L} 10 8 + 76.788 0 0 6.0578 6.0578 87.572 0 0 0 15.566884185923655 27.683240267568294 15.566884185923655 8.57840941039747 0 1.392159058960253 1.3979400086720375 0.8252574989159953 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVYC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYVC(Carbamidomethyl (C)){I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVY[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}VYC(Carbamidomethyl (C)){I|L};[YQ]VYW{I|L}H{M(Oxidation (M))|F}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV[CG]{I|L} 6.0578;5.381;5.3348;5.3262;5.0259;4.9313;4.658;4.6495;4.6094;4.6032 -;-;-;-;-;-;-;-;+;- + 1461 NaN NaN 206167.1 NaN 12313 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15756 68.367 NaN 485980 35 0 53416 0.261 + 13250 KYMDIEFDF 9 66 612.2680622783852 1222.5215716235703 2 612.2680053710938 MULTI HCD FTMS 0 0 0 15752 221528.890625 0.07250709879571268 38 -0.9871292114257812 4 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 53.40400417844725 0.026808823219830042 2 E{M(Oxidation (M))|F}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 63.369 0 0 5.1835 0 0 262.09536860852717 0 262.09536860852717 0 41.942584213740574 0 0 0 1.5 0 1.0189301784845295 0 E{M(Oxidation (M))|F}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.1835 - 354 NaN NaN 178933.1 NaN 12314 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15757 68.37 NaN 1193400 35 0 198690 0.261 + 25809 SLPEDFYHF 9 84 577.7613356029801 1153.5081182727602 2 578.2774047851562 MULTI HCD FTMS 0 0 0 15752 73441.0703125 0.4795768847832755 4 -0.1014862060546875 5 Unmodified _SLPEDFYHF_ ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF 42.09456458481378 0.05572955244001856 2 {[TV]|[{I|L}S]}[DP]E{M(Oxidation (M))|F}YH{M(Oxidation (M))|F} 9 2 + 43.866 0 0 3.8028 3.8028 81.877 0 0 0 4.194699959806975 1.1092437480817807 1.1092437480817807 2.632414347745815 0 1.055462187404089 1.6989700043360187 0 0 {[TV]|[{I|L}S]}[DP]E{M(Oxidation (M))|F}YH{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[DP]DAG[VP]H{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[DP]DQ[VP]H{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[EP]D{M(Oxidation (M))|F}YH{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[DP]E{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}G{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[DP]DA[YR]A{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[EP]D{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}G{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}W[HD]H{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}D[WH]H{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PS]D{M(Oxidation (M))|F}YH{M(Oxidation (M))|F} 3.8028;3.5746;3.5265;3.1282;2.9625;2.7015;2.2879;1.7878;1.0552;0.91165 -;-;-;+;-;-;-;-;-;- + 880 + NaN NaN 265651.6 NaN 12315 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15758 68.374 NaN 439330 35 0 162550 0.261 -1 KYMDVQFDF 9 62 604.7681072670384 1207.5216616008768 2 604.767822265625 MULTI HCD FTMS 0 0 0 15752 91384.7734375 0.02667819803630051 120 -3.093475341796875 6 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 38.61474834105838 0.07170385841135779 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 48.998 0 0 4.0577 0 0 666.3044300763687 0 666.3044300763687 0 38.62395659563255 0 0 0 1.3807196863200843 0 0 0.3252574989159953 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.0577 - 158 NaN NaN 161569.3 NaN 12316 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15759 68.377 NaN 491240 35 0 43601 0.262 + 28610 TQKTPPTPQ 9 87 499.26864957700275 996.5227462208055 2 499.76995849609375 MULTI HCD FTMS 0 0 0 15752 78244.6875 0.5437057014800917 -2 0.049072265625 7 Unmodified _TQKTPPTPQ_ ENSG00000168453|ENST00000381418|HR;nc|ENSG00000168453|O43593-2|HR 12.240655878213236 0.2545997876781172 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPP{I|L}TPQ 9 4 + 52.903 0 0 5.3087 5.3087 88.483 0 0 0 10.00508444608478 -1.6722687557546578 -1.6722687557546578 10.70438297975425 0 0 1.3979400086720375 0.6861818737241735 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPP{I|L}TPQ;[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[K{I|L}];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}{[HG]|PP}TPQ;[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG][K{I|L}];[VS]QQP{I|L}TPQ;[DV]T[Q{I|L}][TA][H{I|L}];[HV][R{M(Oxidation (M))|F}]{I|L}TPQ;[WE][WK]V[H{I|L}];[WE][WK]H[{I|L}V];[VP][YV]{[HG]|PP}TPQ 5.3087;4.2346;3.6281;3.3051;3.0675;2.4967;2.1948;1.0511;0.41206;0.057063 -;-;-;-;-;-;-;-;-;- 736 NaN NaN 174930.5 NaN 12317 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15760 68.38 NaN 229750 35 0 14629 0.261 + 13707 KYPLLLDNI 9 64 544.821142033334 1087.627731133468 2 544.821044921875 MULTI HCD FTMS 0 0 0 15752 50082.58203125 0.6668187939205684 3 -0.08193206787109375 8 Unmodified _KYPLLLDNI_ ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12 42.312485326615175 0.05472917415473307 2 [YK][{I|L}P]{I|L}{I|L}DN{I|L} 9 0 + 53.271 0 0 4.8979 4.8979 86.758 0 0 0 5.915149811213496 38.57870170445926 5.915149811213496 9.208187539523749 0 2.2302046884880937 0 0 0.28872548999643577 + + [YK][{I|L}P]{I|L}{I|L}DN{I|L};[YK][{I|L}P]{I|L}{I|L}DGG{I|L} 4.8979;4.0513 +;- + 103 NaN NaN 132084 NaN 12318 3440 15752 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15762 68.385 NaN 659760 35 0 65698 0.327 + 13116 KYLGLLENL 9 97 531.8127071812421 1061.6108614292841 2 531.8131713867188 MULTI HCD FTMS 0 0 0 15761 215695.25 0.7031280433491082 6 -0.153961181640625 1 Unmodified _KYLGLLENL_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 63.227496030279354 0.01306643085373406 2 [YK]{I|L}G{I|L}{I|L}EN{I|L} 9 0 + 68.427 0 0 6.4455 6.4455 89.273 0 0 0 4.762036441594191 33.23113657167475 4.762036441594191 9.208187539523749 0 2.2302046884880937 0 0 0.2302046884880938 + + [YK]{I|L}G{I|L}{I|L}EN{I|L};[YK]{I|L}G{I|L}{I|L}EGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]KEN{I|L};[KA][YV]{I|L}{I|L}EN{I|L};[{M(Oxidation (M))|F}V][KS]{I|L}{I|L}EN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]KEGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]EKN{I|L};[KA][YV]{I|L}{I|L}EGG{I|L};[{M(Oxidation (M))|F}V][KS]{I|L}{I|L}EGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}V]EKGG{I|L} 6.4455;5.5782;4.1511;3.6726;3.5457;3.2837;3.0926;2.8052;2.6784;2.2252 +;-;-;-;-;-;-;-;-;- + 835 NaN NaN 190436 NaN 12319 3441 15761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15763 68.39 NaN 274540 35 0 112340 0.262 + 24473 RYLDSLKAIVF 11 30 442.2589116453977 1323.7549055363932 3 442.2587890625 MULTI HCD FTMS 0 0 0 15761 79054.921875 0.3959734716169765 6 -0.153961181640625 2 Unmodified _RYLDSLKAIVF_ ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN 8.751783647060863 0.3805383164556717 2 V{M(Oxidation (M))|F} 2 9 30.969 0 0 2.3395 0 0 1059.60809875104 0 1059.60809875104 0 30.590496560389973 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F} 2.3395 + + 5 + NaN NaN 133282 NaN 12320 3441 15761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15764 68.393 NaN 253660 35 0 35218 0.261 -1 IYQNLYLMNEK 11 51 482.2434702774068 1443.7085814324205 3 482.24395751953125 MULTI HCD FTMS 0 0 0 15761 68373.984375 0.8186694963816927 -4 0.09806060791015625 3 Oxidation (M) _IYQNLYLM(Oxidation (M))NEK_ ENSG00000155754|ENST00000439140|C2CD6 6.623454094837244 0.3898724468670146 2 {I|L}Y[HV]{M(Oxidation (M))|F}YN 7 -1 51.955 0 0 3.5987 0 0 0 504.23237024478755 504.23237024478755 40.78418229881471 0 0 0 0 0.4247425010840047 2 0 0.4247425010840047 {I|L}Y[HV]{M(Oxidation (M))|F}YN 3.5987 - 62 + NaN NaN 130047.8 NaN 12321 3441 15761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15766 68.398 NaN 1900300 35 0 279280 0.327 + 31893 VYNIHLAVNF 10 112 595.3219090055763 1188.6292650779526 2 595.322021484375 MULTI HCD FTMS 0 0 0 15765 1181529.625 0.38976966064828794 1 -0.0395050048828125 1 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 110.6747026088012 5.03479218847684E-05 2 [YV]N{I|L}H{I|L}AVN{M(Oxidation (M))|F} 10 0 + 84.174 0 0 7.0816 7.0816 88.871 0 0 0 7.4756004067771045 11.527288888310437 7.4756004067771045 7.4756004067771045 0 2.6677353201839438 1.3979400086720375 0 0.6861818737241735 + + [YV]N{I|L}H{I|L}AVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}AVN{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}AVGG{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}ANV{M(Oxidation (M))|F};[YV]GG{I|L}H{I|L}AVN{M(Oxidation (M))|F};{[NV]|[RG]}Y{I|L}H{I|L}AVN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}AVGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}ANV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DKH{I|L}AVN{M(Oxidation (M))|F};[YV]GG{I|L}H{I|L}ANV{M(Oxidation (M))|F} 7.0816;6.4527;6.3106;6.2825;6.0906;5.7498;5.6817;5.6536;5.5217;5.5115 +;-;-;-;-;-;-;-;-;- + 3662 NaN NaN 340423.1 NaN 12322 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15767 68.403 NaN 1073500 35 0 145600 0.261 + 1171 AYLESFYKF 9 87 584.2894496602338 1166.5643463872675 2 584.2899169921875 MULTI HCD FTMS 0 0 0 15765 657789.4375 0.030310815609961277 27 -0.718719482421875 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 134.295615338601 0.00034446139420701925 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 113.24 0 0 9.7073 9.7073 94.864 0 0 0 10.541134294324124 10.541134294324124 10.541134294324124 9.771212547196626 0 3.3494850021680094 2 1.416386562212267 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};S{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}S{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}YAYK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}SY{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9.7073;8.8697;8.8037;8.7626;8.715;8.7025;8.3498;7.8649;7.7703;7.7578 +;-;-;-;-;-;-;-;-;- + 4441 NaN NaN 271886.9 NaN 12323 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15768 68.406 NaN 1144000 35 0 344620 0.261 + 24619 RYLPTGSFPF 10 59 592.8085510866069 1183.6025492400138 2 592.80908203125 MULTI HCD FTMS 0 0 0 15765 494296.96875 0.07733335326782356 18 -0.47164154052734375 3 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 71.70789743142352 0.01556163018108538 2 [YR]{I|L}[TP]GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 10 0 + 80.384 0 0 6.7915 6.7915 93.769 0 0 0 4.884381005764311 69.41483608233659 4.884381005764311 33.21431458903588 0 2.443672679568534 0 1.2302046884880937 0 + + [YR]{I|L}[TP]GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{I|L}[TP][YQ]P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]{I|L}GP{M(Oxidation (M))|F};[YR]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]GP{M(Oxidation (M))|F};[YR][TP]{I|L}GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]GP{M(Oxidation (M))|F};[YR]{I|L}[TP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YR][TP]{I|L}[YQ]P{M(Oxidation (M))|F};[YR]{I|L}[WD]{[VA]|[{I|L}G]}[YV] 6.7915;3.9853;3.7057;3.0936;2.8958;2.7541;1.2609;1.1375;0.3487 +;-;-;-;-;-;-;-;- + 250 NaN NaN 262539.4 NaN 12324 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15769 68.41 NaN 1570000 35 0 283660 0.261 + 9849 HYSPIYLSF 9 90 563.7819291863159 1125.5493054394317 2 563.7822265625 MULTI HCD FTMS 0 0 0 15765 479743 0.5413289071033318 5 -0.140960693359375 4 Unmodified _HYSPIYLSF_ ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 81.61307344734483 0.005330412723537057 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F} 9 4 + 82.885 0 0 7.364 7.364 94.512 0 0 0 14.974250108400469 56.453650195120844 14.974250108400469 28.470325397914564 0 1.9247425010840047 1.0969100130080565 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YSY{I|L}S{M(Oxidation (M))|F};{[WN]|[YH]}[{I|L}P]SY{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[HK]RS{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[PA][QP]Y{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][QP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}[VP]RS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y[QP][QP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[WP][KS]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YS[{I|L}P]NW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}S[VP][QP]{M(Oxidation (M))|F} 7.364;4.8345;4.1198;4.0868;3.3056;3.01;2.9278;2.5238;2.1782;1.9775 -;-;-;-;-;-;-;-;-;- 1051 NaN NaN 349886.4 NaN 12325 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15770 68.413 NaN 783880 35 0 55784 0.261 -1 MLPDVVDDFQ 10 89 597.7734806125873 NaN 0 597.7948608398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))LPDVVDDFQ_ ENSG00000205639|ENST00000338315|MFSD2B;ENST00000469562.1_1_2:24246405-24248323:+|nuORF 12.240655878213236 0.32970798410958835 2 Y{I|L}EN 4 -1 18.236 0 0 1.5279 0 0 147.02283905544942 524.2521456354124 671.2749846908619 0 0 0 0 0 0 0 0.5 0 Y{I|L}EN 1.5279 - 522 + NaN NaN 221930.2 NaN 12326 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15771 68.416 NaN 699580 35 0 46360 0.261 + 32254 VYTVVDEMF 9 85 559.7575340496687 1117.5005151661373 2 559.7578125 MULTI HCD FTMS 0 0 0 15765 253120.40625 0.7521879315292258 -5 0.11106109619140625 6 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 139.54400939418784 2.61670173137287E-05 2 [YV]TVDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 90.218 0 0 8.0732 8.0732 93.269 0 0 0 14.318722087674658 16.478174818886373 14.318722087674658 10.805300040193018 0 2.2302046884880937 1.3979400086720375 2.0114393726401687 0 [YV]TVDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]VTDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]SVDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}TDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[{I|L}T]VD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}{[{M(Oxidation (M))|F}D]|MM}YVTP{M(Oxidation (M))|F};[YV]{[YD]|[{M(Oxidation (M))|F}M]}DVM[{I|L}T];[YV]{[YD]|[{M(Oxidation (M))|F}M]}DVVV{M(Oxidation (M))|F};[YV]{[YD]|[{M(Oxidation (M))|F}M]}DT{I|L}{[ET]|[MV]};[YV]{[YD]|[{M(Oxidation (M))|F}M]}[MT]P{[ET]|[MV]} 8.0732;7.1063;6.7919;5.5808;3.5944;2.8958;2.3542;2.2411;2.0789;0.4982 -;-;-;-;-;-;-;-;-;- 669 NaN NaN 211058 NaN 12327 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15772 68.42 NaN 383690 35 0 20092 0.261 + 27216 SYNNFFRMF 9 75 621.2737767427004 1240.5330005522007 2 621.2739868164062 MULTI HCD FTMS 0 0 0 15765 141915.8125 0.025701235957691314 78 -2.0068130493164062 7 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 82.5293158979368 0.005033931517079822 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 63.493 0 0 5.1182 0 0 64.00161100207772 0 64.00161100207772 0 41.73155171734828 0 0 0 2.0356668758921828 0 0 0.3494850021680094 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1182 - 657 + NaN NaN 166713.7 NaN 12328 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15773 68.423 NaN 456850 35 0 38271 0.263 + 21430 PVVASAQTQP 10 77 499.26864957700275 996.5227462208055 2 499.7687072753906 MULTI HCD FTMS 0 0 0 15765 143910 1 0 0 8 Unmodified _PVVASAQTQP_ ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1 12.240655878213236 0.39661705172222156 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPP{I|L}TPQ 9 8 + 46.837 0 0 4.7001 4.7001 83.657 0 0 0 4.224833804985963 4.224833804985963 4.224833804985963 4.224833804985963 0 0 1.3010299956639813 0.6694451763165201 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPP{I|L}TPQ;[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[K{I|L}];[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG][K{I|L}];[DV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}[KG][{I|L}A];[VS]QQP{I|L}TPQ;[HV][R{M(Oxidation (M))|F}]{I|L}TPQ;[DV]T[Q{I|L}][HT][{I|L}A] 4.7001;4.2761;3.3467;3.1351;2.6754;2.55;1.6015 -;-;-;-;-;-;- 396 NaN NaN 155664.7 NaN 12329 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15774 68.426 NaN 176080 35 0 19575 0.261 + 32111 VYSEVAAYEF 10 46 589.274370218589 1176.5341875039778 2 589.2747802734375 MULTI HCD FTMS 0 0 0 15765 68896.015625 0.07099842543642501 18 -0.47164154052734375 9 Unmodified _VYSEVAAYEF_ ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF 38.175570920033316 0.1612389583597779 2 [{M(Oxidation (M))|F}E]{[SA]|[TG]}[{I|L}T]AYE{M(Oxidation (M))|F} 10 5 + 47.72 0 0 4.056 4.056 82.332 0 0 0 1.974987195809419 37.95371572735597 1.974987195809419 3.0102999566398125 0 1.3807196863200843 0 0.4247425010840047 0 [{M(Oxidation (M))|F}E]{[SA]|[TG]}[{I|L}T]AYE{M(Oxidation (M))|F};[YE]AA[{I|L}T]AYE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[SA]|[TG]}A[{I|L}T]YE{M(Oxidation (M))|F};[YE]AAA[{I|L}T]YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][QT][{I|L}T]YE{M(Oxidation (M))|F};[YE]{[NV]|[RG]}[{I|L}T]YE{M(Oxidation (M))|F} 4.056;3.8002;2.9696;2.7138;2.6703;2.4144 -;-;-;-;-;- 117 NaN NaN 113044.2 NaN 12330 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15775 68.43 NaN 184000 35 0 54491 0.262 + 15060 LLTPSSHLL 9 43 490.792350640462 979.5701483477241 2 490.7923583984375 MULTI HCD FTMS 0 0 0 15765 51840.1015625 0.11646850298725174 11 -0.294891357421875 10 Unmodified _LLTPSSHLL_ ENST00000510230.1_1_5:134786355-134794140:+|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 7 25.969 0 0 2.6511 0 0 735.3903082161354 0 735.3903082161354 0 20.48455006504028 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6511 + + 8 NaN NaN 120720 NaN 12331 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15776 68.433 NaN 250120 35 0 22440 0.261 -1 SPMDDGFVSL 10 79 542.2371510765263 1082.4597492198525 2 542.2371826171875 MULTI HCD FTMS 0 0 0 15765 51281.78515625 0.5323906532188333 -5 0.11106109619140625 11 Oxidation (M) _SPM(Oxidation (M))DDGFVSL_ ENSG00000168522|ENST00000302279|FNTA;ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA 21.536976647645854 0.3096624038397699 2 ED[KG]G{M(Oxidation (M))|F}V{[TV]|[{I|L}S]} 9 -1 29.196 0 0 2.6972 0 0 131.97471611613997 0 131.97471611613997 0 3.11726762060173 0 0 0 1.4247425010840047 0 0 0.28872548999643577 ED[KG]G{M(Oxidation (M))|F}V{[TV]|[{I|L}S]} 2.6972 - 224 + NaN NaN 123047.4 NaN 12332 3442 15765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15778 68.438 NaN 450180 35 0 24781 0.327 + 6357 FPFYYEIKM 9 67 627.298453891388 1252.582354849576 2 627.2991943359375 MULTI HCD FTMS 0 0 0 15777 257618.875 0.27261469368610153 19 -0.47756195068359375 1 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 67.83816525789305 0.009787749748478139 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 77.674 0 0 6.2011 6.2011 85.224 0 0 0 12.183793980228472 2.1837939802284723 2.1837939802284723 2.1837939802284723 0 2.6025684359364405 0 0.3054621874040891 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[{I|L}T][VG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[{I|L}T][VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{[DS]|[MA]|[CV]|TT}{[HG]|PP}R{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}NYKNK{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}N[{I|L}A]W[Y{M(Oxidation (M))|F}];{M(Oxidation (M))|F}P[RH][NP]PNK{M(Oxidation (M))|F} 6.2011;6.0268;5.3873;3.5371;3.2143;2.8976;2.808;2.1721;1.7281;1.5001 +;+;-;-;-;-;-;-;-;- + 1111 + NaN NaN 164156.1 NaN 12333 3443 15777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15779 68.442 NaN 231430 35 0 26911 0.263 + 9593 HSFISATVL 9 56 487.76896683087296 973.5233807285459 2 487.7690734863281 MULTI HCD FTMS 0 0 0 15777 103232.5078125 0.7815915939114014 6 -0.1537933349609375 2 Unmodified _HSFISATVL_ ENST00000295133.9_1_2:73483541-73483895:-|nuORF 25.399314129420986 0.14091189997036632 2 ATV{I|L} 4 5 50.433 0 0 5.1805 0 0 571.2741513833599 0 571.2741513833599 0 44.94850021680094 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + ATV{I|L} 5.1805 + + 75 NaN NaN 135603.6 NaN 12334 3443 15777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15780 68.446 NaN 272620 35 0 38063 0.261 + 29730 VDLSLGVTKL 10 70 522.8184960103958 1043.6224390875916 2 522.8185424804688 MULTI HCD FTMS 0 0 0 15777 88527.5859375 0.12120910638535291 14 -0.37023162841796875 3 Unmodified _VDLSLGVTKL_ REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__nc|ENSG00000157106|Q96Q15-3|SMG1;REV__nc|ENSG00000157106|Q96Q15-4|SMG1;REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant 8.155526934196011 0.43213520406898465 2 VQQVTK{I|L} 7 -1 22.924 0 0 2.1966 0 0 229.14241225410314 0 229.14241225410314 0 5.644038680813491 0 0 0 0.3494850021680094 0 0 0 VQQVTK{I|L} 2.1966 - 115 NaN NaN 135448.2 NaN 12335 3443 15777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15781 68.449 NaN 261260 35 0 21090 0.261 -1 SYFRYSLM 8 67 541.7523669874173 1081.4901810416345 2 541.7540283203125 MULTI HCD FTMS 0 0 0 15777 88394.859375 0.02088898662790794 49 -1.2948455810546875 4 Oxidation (M) _SYFRYSLM(Oxidation (M))_ ENSG00000071909|ENST00000408978|MYO3B;ENSG00000095777|ENST00000642920|MYO3A;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-6|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B 26.88365393820708 0.39599352634412927 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 28.276 0 0 2.6146 0 0 690.2769374887033 0 690.2769374887033 0 5.982587709797329 0 0 0 1.110924374808178 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.6146 - 167 + NaN NaN 127671.8 NaN 12336 3443 15777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15782 68.452 NaN 103710 35 0 3592.3 0.261 -1 AHLPFCWGAVC 11 52 630.7873625508255 NaN 0 630.9124145507812 PEAK HCD FTMS 0 0 0 15777 18924.427734375 0.5139769832177961 14 -0.37023162841796875 5 Carbamidomethyl (C) _AHLPFCWGAVC(Carbamidomethyl (C))_ ENSG00000161509|ENST00000293190|GRIN2C 10.823927491677226 0.3114157783022309 2 A 1 -1 13.979 0 0 1.1099 0 0 277.1068773459884 908.3891695611936 1185.496046907182 0 0 0 0 0 0.8494850021680094 0 0 0 A 1.1099 + + 8 + NaN NaN 110713.5 NaN 12337 3443 15777 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15784 68.457 NaN 855510 35 0 183710 0.327 + 1384 AYPTVKFYF 9 92 568.294666035547 1134.574779137894 2 568.2944946289062 MULTI HCD FTMS 0 0 0 15783 241125.578125 0.49441611013483316 3 -0.08190155029296875 1 Unmodified _AYPTVKFYF_ ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10 39.94969957227396 0.06557568441294001 2 SN{M(Oxidation (M))|F} 3 8 29.737 0 0 2.621 0 0 768.4235674362376 0 768.4235674362376 0 1.220904455472823 0 0 0 0.3054621874040891 0 0.3494850021680094 0 SN{M(Oxidation (M))|F} 2.621 - 310 NaN NaN 217787.2 NaN 12338 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15785 68.462 NaN 844460 35 0 180470 0.261 + 31544 VYGPLPQSF 9 72 504.26362326524537 1006.5126935972908 2 504.263916015625 MULTI HCD FTMS 0 0 0 15783 277050.6875 0.23033960145652752 -3 0.07205963134765625 2 Unmodified _VYGPLPQSF_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 61.357469665136826 0.01568246967499496 2 [YV]APVPQS{M(Oxidation (M))|F} 9 2 + 57.09 0 0 5.672 5.672 89.605 0 0 0 8.255287968255864 8.255287968255864 8.255287968255864 12.505288545306556 0 2.075741123860295 1.5228787452803376 0.7614393726401688 0.23965182871044374 [YV]APVPQS{M(Oxidation (M))|F};[YV]APV{[QS]|[NT]}P{M(Oxidation (M))|F};[YV]{[QS]|[NT]}VPAP{M(Oxidation (M))|F};[YV]APVP[AG]S{M(Oxidation (M))|F};[YV]A[SG]V[PA]P{M(Oxidation (M))|F};[YV][PA]V[SG]AP{M(Oxidation (M))|F};[YV][WE]AN{I|L}{I|L};[YV]A[WE]N{I|L}{I|L};[QP]S{M(Oxidation (M))|F}[{I|L}T]AP{M(Oxidation (M))|F};[YV]A[WE]GG{I|L}{I|L} 5.672;4.4296;4.2053;3.937;3.3261;3.1018;2.9572;2.909;2.0401;1.7164 -;-;-;-;-;-;-;-;-;- 713 + NaN NaN 214989.8 NaN 12339 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15786 68.465 NaN 393320 35 0 62289 0.261 + 4567 EYLLKAYVL 9 67 556.3234786183602 1110.6324043035204 2 556.3239135742188 MULTI HCD FTMS 0 0 0 15783 167429.5625 0.5134834613684571 3 -0.08190155029296875 3 Unmodified _EYLLKAYVL_ ENSG00000116406|ENST00000318130|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 88.95385435242217 0.004553379958619559 2 [YE]{I|L}{I|L}KAYV{I|L} 9 0 + 69.319 0 0 6.2414 6.2414 94.002 0 0 0 15.295000083553205 46.99986893552975 15.295000083553205 69.31926257837823 0 2.441962823435958 0 2.3807196863200843 0 + + [YE]{I|L}{I|L}KAYV{I|L} 6.2414 + + 330 NaN NaN 153478.6 NaN 12340 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15787 68.469 NaN 824550 35 0 85516 0.261 + 9290 HPNIVSLQDVL 11 75 617.8433258610492 1233.6720987888982 2 617.8433837890625 MULTI HCD FTMS 0 0 0 15783 91484.6875 0.19936706705656898 9 -0.23583221435546875 4 Unmodified _HPNIVSLQDVL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 13.51866281300042 0.33929385944539686 2 [YT]E{I|L}R[HV]AM 9 10 38.668 0 0 3.1343 0 0 0 130.11923021340695 130.11923021340695 6.852438532417533 0 0 0 0 0 2 0.6861818737241735 0 [YT]E{I|L}R[HV]AM 3.1343 - 692 NaN NaN 205989.4 NaN 12341 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15788 68.472 NaN 248340 35 0 14974 0.261 + 1679 CFDIFYSGF 9 64 549.7344313280139 NaN 0 549.7500610351562 PEAK HCD FTMS 0 0 0 15783 6933.431640625 0.6878946888056376 1 -0.02620697021484375 5 Unmodified _CFDIFYSGF_ REV__ENST00000496334.6_1_2:64083556-64109621:+|nuORF 4.75600775471527 0.27219989241163056 2 PKV 3 -1 14.693 0 0 1.3388 0 0 165.93913885343494 604.2774065932157 770.2165454466506 0 0 0 0 0 0 0 0 0 PKV 1.3388 - 80 + NaN NaN 126781.3 NaN 12342 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15789 68.475 NaN 310300 35 0 44196 0.261 + 7046 FQECERMNIL 10 60 641.7997542830852 1281.5849556329704 2 642.3172607421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FQECERMNIL_ DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11;ENSG00000187775|ENST00000389840|DNAH17 2.9952420565917617 0.4594494122822477 2 {I|L}{M(Oxidation (M))|F} 2 9 10.969 0 0 0.8559 0 0 130.05971192309931 888.3748873346311 1018.4345992577305 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.8559 - 28 + NaN NaN 132431.6 NaN 12343 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15790 68.479 NaN 215300 35 0 27729 0.263 + 31558 VYGTKWEF 8 66 515.2546156888651 1028.49467844453 2 515.2543334960938 MULTI HCD FTMS 0 0 0 15783 56203.29296875 0.23314791852745848 -3 0.07205963134765625 7 Unmodified _VYGTKWEF_ ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF;nc|ENSG00000066827|Q9P243-2|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT 39.957323273324995 0.23147789240432073 2 VYG{[SA]|[TG]}[NG]KS{M(Oxidation (M))|F} 10 5 + 77.599 0 0 7.5449 7.5449 86.88 0 0 0 73.33903720940887 15.026975159433533 15.026975159433533 0.5115252244738144 0 2.274227503252014 2 0.3252574989159953 0 VYG{[SA]|[TG]}[NG]KS{M(Oxidation (M))|F};VYG{[SA]|[TG]}[W{I|L}]S{M(Oxidation (M))|F};VY{[QS]|[NT]}[NG]KS{M(Oxidation (M))|F};VY{[QS]|[NT]}[W{I|L}]S{M(Oxidation (M))|F};VYG{[WT]|[RM]}{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};[YV]G{[SA]|[TG]}[W{I|L}]S{M(Oxidation (M))|F};[YV]{[QS]|[NT]}[W{I|L}]S{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[EP][{I|L}P]GP{M(Oxidation (M))|F};[YR]{[SA]|[TG]}E{[VA]|[{I|L}G]}S{M(Oxidation (M))|F};[YE][KG][NG]KS{M(Oxidation (M))|F} 7.5449;7.4952;6.7895;6.745;6.0367;6.02;5.64;4.4306;2.3186;2.1214 -;-;-;-;-;-;-;-;-;- 244 + NaN NaN 122611.7 NaN 12344 3444 15783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15792 68.484 NaN 1296600 35 0 134400 0.327 + 11963 KFNPVSFTW 9 82 563.2902527931236 1124.5659526530471 2 563.2901611328125 MULTI HCD FTMS 0 0 0 15791 644979.8125 0.3370181697668519 -2 0.0457611083984375 1 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 129.77232118876745 0.0006187813247758304 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW 9 0 + 83.95 0 0 7.4651 7.4651 89.138 0 0 0 4.137342758552691 48.01029995663981 4.137342758552691 6.440162615404077 0 2.7302046884880937 0 0.7302046884880937 0.7742275032520141 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}[KG]PVS{M(Oxidation (M))|F}TW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GGPVS{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}SVP[KG]W;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}SVP[KG]W;[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}SVP[KG]W;{[WT]|[RM]}[KA]VS{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}SV[HA]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{[ES]|[DT]|[{I|L}C]}[{I|L}T]NEK;{[WT]|[RM]}{M(Oxidation (M))|F}S[{I|L}T]NEK 7.4651;6.8925;6.6463;6.5339;5.892;5.6447;5.2204;4.4232;4.2177;3.0102 +;-;-;-;-;-;-;-;-;- + 1381 NaN NaN 279966.8 NaN 12345 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15793 68.488 NaN 268480 35 0 22828 0.261 + 1255 AYLSGMLRF 9 64 529.2786553279326 1056.542757722665 2 529.2783203125 MULTI HCD FTMS 0 0 0 15791 148492.328125 0.9820282845784764 -2 0.0457611083984375 2 Unmodified _AYLSGMLRF_ ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF;nc|ENSG00000167881|Q9UHB9-2|SRP68;nc|ENSG00000167881|Q9UHB9-4|SRP68 92.65332237495696 0.004456439685314431 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGM{I|L}R{M(Oxidation (M))|F} 9 0 + 95.672 0 0 9.0552 9.0552 93.449 0 0 0 17.53108253432609 88.68185428759041 17.53108253432609 9.208187539523749 0 3.3494850021680094 1.6989700043360187 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGM{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}SGM{I|L}[VG]{M(Oxidation (M))|F};[Y{I|L}]ASGM{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[ES]|[DT]|[{I|L}C]};[Y{I|L}]{[QS]|[NT]}M{I|L}R{M(Oxidation (M))|F} 9.0552;8.1836;6.3123;4.8449;4.6312;3.5478 +;-;-;-;-;- + 263 NaN NaN 121443.5 NaN 12346 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15794 68.492 NaN 308910 35 0 28896 0.261 + 1418 AYQLMTDVF 9 59 552.2574020468604 1102.5002511605207 2 552.239501953125 MULTI HCD FTMS 0 0 0 15791 79710.15625 0.3368036698260435 -2 0.0457611083984375 3 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 56.17704186161178 0.022929533404884107 2 QS{I|L}E{[ES]|[DT]|[{I|L}C]}V{M(Oxidation (M))|F} 8 4 52.472 0 0 4.7594 0 0 165.04609877754064 0 165.04609877754064 0 33.07441916767644 0 0 0 1.3494850021680094 0 0.6861818737241735 0 QS{I|L}E{[ES]|[DT]|[{I|L}C]}V{M(Oxidation (M))|F} 4.7594 - 253 NaN NaN 143289 NaN 12347 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15795 68.495 NaN 521560 35 0 31563 0.261 -1 IDLLEIESM 9 91 539.7724229552359 1077.5302929772718 2 539.7717895507812 MULTI HCD FTMS 0 0 0 15791 53437.12109375 0.5512246905282567 2 -0.055694580078125 4 Oxidation (M) _IDLLEIESM(Oxidation (M))_ ENSG00000151838|ENST00000537690|CCDC175 20.453626601364224 0.18364154288633264 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}G[WQ]{I|L}S{M(Oxidation (M))|F} 9 -1 + 51.689 0 0 4.797 4.797 83.243 0 0 0 22.43600395506251 0.5365462415229061 0.5365462415229061 2.95880017344075 0 1.0138793319624577 2 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}G[WQ]{I|L}S{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}G[WQ]{M(Oxidation (M))|F}{[TV]|[{I|L}S]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}EE{I|L}{I|L}S{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}EE{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}G[{I|L}T]{[NV]|[RG]}S{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}G[C(Carbamidomethyl (C))R]VV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[DN]Y{I|L}{I|L}GR;{NN|[MP]|[D{I|L}]|[EV]}{I|L}[RD]{[NV]|[RG]}S{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}G{[CP]|[EA]}[{M(Oxidation (M))|F}T]GR;{NN|[MP]|[D{I|L}]|[EV]}{I|L}G{[SA]|[TG]}{[ES]|[DT]|[{I|L}C]}MR 4.797;4.5224;4.0893;3.8147;3.4375;3.3362;3.2056;3.0517;2.7655;2.6574 -;-;-;-;-;-;-;-;-;- 647 + NaN NaN 175963.9 NaN 12348 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15796 68.498 NaN 277810 35 0 121740 0.262 + 13381 KYNHLNLFLF 10 32 436.90806517382003 1307.7023661216601 3 436.9079284667969 MULTI HCD FTMS 0 0 0 15791 63364.53515625 0.43047066408836976 4 -0.1080322265625 5 Unmodified _KYNHLNLFLF_ ENSG00000103335|ENST00000301015|PIEZO1 3.5870582119611467 0.4563168352879256 2 {I|L}{M(Oxidation (M))|F} 2 8 29.776 0 0 2.277 0 0 1029.53774213855 0 1029.53774213855 0 29.776296993281406 0 0 0 0.8807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.277 + + 6 NaN NaN 131587.2 NaN 12349 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15797 68.502 NaN 272440 35 0 18038 0.261 + 29590 VAEHYLIQL 9 68 543.3029854467579 1084.5914179603158 2 543.3025512695312 MULTI HCD FTMS 0 0 0 15791 33926.45703125 0.020008863992086443 32 -0.8265533447265625 6 Unmodified _VAEHYLIQL_ REV__ENST00000472469.5_2_3:58870372-59035390:-|nuORF 18.1463463914782 0.20357593197100715 2 {I|L}{I|L}Q{I|L} 4 -1 33.66 0 0 3.1035 0 0 599.2700062482437 0 599.2700062482437 0 18.17532531436136 0 0 0 0.7742275032520141 0 0 0 {I|L}{I|L}Q{I|L} 3.1035 + + 104 NaN NaN 148630 NaN 12350 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15798 68.505 NaN 225030 35 0 40990 0.261 -1 MEEQHVIHML 10 58 641.7997542830852 1281.5849556329704 2 642.3170166015625 MULTI HCD FTMS 0 0 0 15791 11295.970703125 0.3638961116752176 8 -0.209625244140625 7 Oxidation (M) _MEEQHVIHM(Oxidation (M))L_ ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1 4.3292370932331545 0.45238836448149167 2 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.8559 0 0 130.06136450193463 888.3711641900999 1018.4325286920346 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.8559 - 38 + NaN NaN 122707.5 NaN 12351 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15799 68.508 NaN 263010 35 0 15818 0.261 + -1 VYVILMIFF 9 76 580.8269860142668 1159.6394190953336 2 580.8267211914062 MULTI HCD FTMS 0 0 0 15791 33374.84765625 1 0 0 8 Oxidation (M) _VYVILM(Oxidation (M))IFF_ REV__ENSG00000265808|ENST00000578049|SEC22B;REV__PSMB4-SEC22B|1|fusion 5.230669730166228 0.3113646817964458 2 V{M(Oxidation (M))|F} 2 -1 12.307 0 0 1.0613 0 0 895.48930556465 0 895.48930556465 0 5.228787452803376 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.0613 - 46 NaN NaN 131067.6 NaN 12352 3445 15791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15801 68.513 NaN 1363500 35 0 248320 0.327 + 25699 SISPNCGYINS 11 93 577.7613356029801 1153.5081182727602 2 578.2774658203125 MULTI HCD FTMS 0 0 0 15800 33628.78125 0.21959900750776826 10 -0.2620849609375 1 Unmodified _SISPNCGYINS_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 10.799506525563784 0.36298595732910816 2 G{I|L}{M(Oxidation (M))|F}{[CA]|SS}Y{I|L}G{M(Oxidation (M))|F} 9 7 38.95 0 0 3.3766 0 0 164.04827091453757 0 164.04827091453757 0 15.16965750794278 0 0 0 0 0 0.7302046884880937 0 G{I|L}{M(Oxidation (M))|F}{[CA]|SS}Y{I|L}G{M(Oxidation (M))|F} 3.3766 - 419 + NaN NaN 300855.4 NaN 12353 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15802 68.518 NaN 412540 35 0 43034 0.261 + 13251 KYMDIEFDF 9 73 612.2680622783852 1222.5215716235703 2 612.2682495117188 MULTI HCD FTMS 0 0 0 15800 189269.921875 0.06194863742480518 44 -1.1605072021484375 2 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 45.739877483867886 0.03899552410870734 2 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 4 58.933 0 0 4.8206 0 0 262.09483534980626 0 262.09483534980626 0 48.47495754813579 0 0 0 1.5 0 0.2742275032520141 0 {M(Oxidation (M))|F}EKE{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.8206 - 338 NaN NaN 167534.4 NaN 12354 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15803 68.521 NaN 373470 35 0 91101 0.261 + 10079 IFFENHPYF 9 64 607.2872616918412 1212.5599704504823 2 607.2876586914062 MULTI HCD FTMS 0 0 0 15800 227944.359375 0.09626665927949411 24 -0.62890625 3 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 69.10491478415734 0.009377850133389008 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENH 6 3 55.482 0 0 4.5756 0 0 0 422.17148767642817 422.17148767642817 39.28456906244314 0 0 0 0 1.6549471895720984 0 0.3807196863200844 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENH 4.5756 + + 328 + NaN NaN 153245 NaN 12355 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15804 68.524 NaN 317370 35 0 23483 0.261 + 22966 QYVYWLHML 9 61 634.8101208564551 1267.6056887797101 2 634.8102416992188 MULTI HCD FTMS 0 0 0 15800 122200.2578125 0.2778686480777974 11 -0.29494476318359375 4 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 40.44857923139169 0.06328554730241728 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 10 8 + 49.939 0 0 3.9396 3.9396 83.369 0 0 0 1.038398967110723 7.365808979962765 1.038398967110723 6.020599913279625 0 0.805462187404089 1.3979400086720375 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]V{[WS]|[C(Carbamidomethyl (C)){I|L}]};[{I|L}T][WQ]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}AA{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[YD]|[{M(Oxidation (M))|F}M]};[YQ]VY{[{M(Oxidation (M))|F}C]|[YS]}{I|L}H[VP];{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[ET]|[MV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY[VS]{I|L}H{[YD]|[{M(Oxidation (M))|F}M]} 3.9396;3.4647;3.4647;2.6133;2.3215;2.0755;1.825;1.6187;1.6091;1.5029 -;-;-;-;-;-;-;-;-;- 445 NaN NaN 139436.8 NaN 12356 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15805 68.528 NaN 300610 35 0 21255 0.261 + 15396 LPDGTSLTQTF 11 74 590.2982271285277 1178.5819013238554 2 590.2988891601562 MULTI HCD FTMS 0 0 0 15800 115065.5546875 0.14582533005075315 10 -0.2620849609375 5 Unmodified _LPDGTSLTQTF_ ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1 42.312485326615175 0.12205692784641806 2 {I|L}TQT{M(Oxidation (M))|F} 5 6 52.479 0 0 4.4528 0 0 570.2653675763687 0 570.2653675763687 0 43.80719686320084 0 0 0 1.274227503252014 0 0.6549471895720984 0 + {I|L}TQT{M(Oxidation (M))|F} 4.4528 + + 392 NaN NaN 135437.8 NaN 12357 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15806 68.531 NaN 195030 35 0 13843 0.261 + 26692 SYANYFIRL 9 77 573.8012938186569 1145.5880347041136 2 573.8006591796875 MULTI HCD FTMS 0 0 0 15800 37453.7265625 0.06615945325844841 22 -0.584625244140625 6 Unmodified _SYANYFIRL_ ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 34.40172386719151 0.0910440009062557 2 {I|L}{M(Oxidation (M))|F}YNCS{I|L} 7 7 49.501 0 0 4.321 0 0 287.1954518048844 0 287.1954518048844 0 25.34395415117551 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {I|L}{M(Oxidation (M))|F}YNCS{I|L} 4.321 - 329 NaN NaN 113146.3 NaN 12358 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15807 68.534 NaN 209900 35 0 27439 0.261 + 34205 YPDPAIAQF 9 55 511.25294451099745 1020.4913360887949 2 511.25286865234375 MULTI HCD FTMS 0 0 0 15800 61860.34765625 0.7453740795579713 -1 0.0295257568359375 7 Unmodified _YPDPAIAQF_ ENSG00000170606|ENST00000304858|HSPA4 36.12702656103203 0.08312389501731911 2 {I|L}AQ{M(Oxidation (M))|F} 4 5 58.175 0 0 5.7007 0 0 543.2316752995356 0 543.2316752995356 0 34.17903076553699 0 0 0 1.9247425010840047 0 0 0.8494850021680094 + {I|L}AQ{M(Oxidation (M))|F} 5.7007 + + 103 + NaN NaN 131046.3 NaN 12359 3446 15800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15809 68.539 NaN 1857700 35 0 259570 0.327 + 31894 VYNIHLAVNF 10 113 595.3219090055763 1188.6292650779526 2 595.3220825195312 MULTI HCD FTMS 0 0 0 15808 1509155.25 0.49784865077596524 6 -0.1539306640625 1 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 122.17920374332846 3.5240061974833266E-05 2 VYN{I|L}H{I|L}AVN{M(Oxidation (M))|F} 10 0 + 92.075 0 0 7.7463 7.7463 87.661 0 0 0 1.5102344244046861 1.5102344244046861 1.5102344244046861 1.5102344244046861 0 2.992992819099939 1.5228787452803376 0 1.2302046884880937 + + VYN{I|L}H{I|L}AVN{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}AVN{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}AVGG{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}ANV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VKH{I|L}AVN{M(Oxidation (M))|F};[YV]GG{I|L}H{I|L}AVN{M(Oxidation (M))|F};{[NV]|[RG]}Y{I|L}H{I|L}AVN{M(Oxidation (M))|F};[YV]N{I|L}H{I|L}AGGV{M(Oxidation (M))|F};[YN]V{I|L}H{I|L}AVN{M(Oxidation (M))|F};[YV]GG{I|L}H{I|L}ANV{M(Oxidation (M))|F} 7.7463;7.6193;6.8482;6.8235;6.3981;6.3439;6.1823;6.0525;5.809;5.7788 +;+;-;-;-;-;-;-;-;- + 5160 + NaN NaN 369552.3 NaN 12360 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15810 68.544 NaN 712810 35 0 106940 0.261 + 1172 AYLESFYKF 9 72 584.2894496602338 1166.5643463872675 2 584.2898559570312 MULTI HCD FTMS 0 0 0 15808 490400 0.02259754129166145 32 -0.83648681640625 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 114.20165948288297 0.0022564706844261533 2 AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 121.86 0 0 10.446 10.446 95.835 0 0 0 63.44335023848103 14.973024840566467 14.973024840566467 11.919628234359578 0 3.1989700043360187 2 0.3807196863200844 0.3494850021680094 + + AY{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};AY{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};[Y{I|L}]ATD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 10.446;9.4247;8.48;8.4407;7.496;7.0236;6.6141;6.2523;6.0789;6.0396 +;+;-;-;-;-;-;-;-;- + 1509 + NaN NaN 202981.2 NaN 12361 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15811 68.547 NaN 1971200 35 0 286710 0.261 + 29019 TYELRYFQI 9 87 616.819007517259 1231.623462101318 2 616.8192138671875 MULTI HCD FTMS 0 0 0 15808 701342.3125 1 0 0 3 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 100.0907132914201 0.004261551473353346 2 [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L} 9 0 + 94.509 0 0 7.6736 7.6736 91.514 0 0 0 12.698405410982616 13.437813496532698 12.698405410982616 9.208187539523749 0 2.3737125054200234 2 1.0629529932484498 0 + + [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YE]T{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RYQ{M(Oxidation (M))|F}{I|L};[YT]E{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]E{I|L}RQY{M(Oxidation (M))|F}{I|L};[YE]T{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YT]E{I|L}RY[AG]{M(Oxidation (M))|F}{I|L};[YT]E{I|L}{M(Oxidation (M))|F}[YR]Q{I|L};[YE]T{I|L}RYQ{M(Oxidation (M))|F}{I|L} 7.6736;6.9259;6.6425;6.5285;6.0124;6.0024;5.8949;5.7809;5.6644;5.4975 +;-;-;-;-;-;-;-;-;- + 2276 NaN NaN 399894.2 NaN 12362 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15812 68.551 NaN 391080 35 0 16454 0.261 + 6358 FPFYYEIKM 9 67 627.298453891388 1252.582354849576 2 627.2991333007812 MULTI HCD FTMS 0 0 0 15808 214335.40625 0.22681172379519893 23 -0.6027374267578125 4 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 67.83816525789305 0.009787749748478139 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 77.247 0 0 6.167 6.167 85.702 0 0 0 13.50325315531208 3.5032531553120805 3.5032531553120805 3.5032531553120805 0 2.5400990676322905 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YY{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DN]P{M(Oxidation (M))|F}E{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}A[HV]N[RH]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[{I|L}T][VG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YK{[QN]|[E{I|L}]|[KN]}[Y{M(Oxidation (M))|F}];[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YK{[DS]|[MA]|[CV]|TT}{[HG]|PP}R{M(Oxidation (M))|F} 6.167;5.8874;5.2479;4.6083;3.6792;3.4461;3.3976;3.2796;3.252;2.9644 +;+;-;-;-;-;-;-;-;- + 1488 + NaN NaN 147313.8 NaN 12363 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15813 68.554 NaN 426900 35 0 54788 0.261 + 1419 AYQLMTDVF 9 61 552.2574020468604 1102.5002511605207 2 552.2576904296875 MULTI HCD FTMS 0 0 0 15808 236666.53125 1 0 0 5 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 81.89019881105858 0.005240739447516426 2 VDT{M(Oxidation (M))|F}{I|L}P[C(Carbamidomethyl (C))S] 8 8 55.729 0 0 5.0547 0 0 165.07910353828282 0 165.07910353828282 0 15.7306842758112 0 0 0 2.305462187404089 0 1.1861818737241734 0 VDT{M(Oxidation (M))|F}{I|L}P[C(Carbamidomethyl (C))S] 5.0547 - 613 NaN NaN 162121.9 NaN 12364 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15814 68.557 NaN 540520 35 0 25670 0.261 + 26674 SYAFHFLAVS 10 96 571.2879567182533 1140.5613605033066 2 571.28759765625 MULTI HCD FTMS 0 0 0 15808 176298.140625 0.8184885092887224 -3 0.08190155029296875 6 Unmodified _SYAFHFLAVS_ ENSG00000168306|ENST00000302819|ACOX2 29.081581746732265 0.240155558137004 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}T{[DS]|[MA]|[CV]|TT} 10 9 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} + + 61.667 1.0033 0.36462 5.4067 5.4067 62.902 0 0 0 0 34.09669664465362 0 0 0 2.774227503252014 0 1.4361818737241734 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NPVS{M(Oxidation (M))|F}T{[DS]|[MA]|[CV]|TT} 5.4067 - 1141 + NaN NaN 184712 NaN 12365 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15815 68.561 NaN 354840 35 0 18919 0.261 + 13160 KYLQILTSL 9 89 539.8288660729991 1077.643179212798 2 539.828857421875 MULTI HCD FTMS 0 0 0 15808 209553.5625 1 0 0 7 Unmodified _KYLQILTSL_ ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104 57.72198328787511 0.020768266150574023 2 T{I|L}{I|L}Q[VS]S{I|L} 8 5 54.972 0 0 5.1011 0 0 218.1263905255875 0 218.1263905255875 0 28.528587190895962 0 0 0 1.3494850021680094 0 0.9361818737241734 0 T{I|L}{I|L}Q[VS]S{I|L} 5.1011 - 355 NaN NaN 154487.6 NaN 12366 3447 15808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15817 68.565 NaN 642240 35 0 169480 0.327 + 24620 RYLPTGSFPF 10 60 592.8085510866069 1183.6025492400138 2 592.80908203125 MULTI HCD FTMS 0 0 0 15816 233869.25 0.036589124498309894 24 -0.6218948364257812 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 45.739877483867886 0.09559676962230333 2 GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 5 5 50.547 0 0 4.2706 0 0 630.34868056465 0 630.34868056465 0 41.083041560618696 0 0 0 1.1747425010840047 0 1.2302046884880937 0 + GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4.2706 + + 151 NaN NaN 201350.4 NaN 12367 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15818 68.57 NaN 470310 35 0 30284 0.261 + 32255 VYTVVDEMF 9 81 559.7575340496687 1117.5005151661373 2 559.7579956054688 MULTI HCD FTMS 0 0 0 15816 215642.03125 0.6408149221935684 1 -0.02614593505859375 2 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 139.54400939418784 2.61670173137287E-05 2 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 84.886 0 0 7.5961 7.5961 95.425 0 0 0 4.189615513722202 4.189615513722202 4.189615513722202 36.479400086720375 0 2.274227503252014 1.5228787452803376 1.9802046884880937 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}T][DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.5961;4.3317 +;- + 302 NaN NaN 165324 NaN 12368 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15819 68.573 NaN 485390 35 0 40969 0.261 + 7843 FYRTLTWAH 9 80 597.8087497821837 NaN 0 597.7949829101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FYRTLTWAH_ ENSG00000177669|ENST00000320542|MBOAT4;nc|ENSG00000177669|Q96T53-2|MBOAT4 7.910154910731844 0.25691533546754686 2 Y{I|L}E 3 7 22.619 0 0 1.8951 0 0 147.09362153526723 638.2944739876438 785.388095522911 0 0 0 0 0 0 0 0.8807196863200843 0 Y{I|L}E 1.8951 - 417 + NaN NaN 169758.3 NaN 12369 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15820 68.577 NaN 300600 35 0 19080 0.261 + 27217 SYNNFFRMF 9 66 621.2737767427004 1240.5330005522007 2 621.2740478515625 MULTI HCD FTMS 0 0 0 15816 168589.109375 0.030531823083096564 84 -2.1170120239257812 4 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 82.5293158979368 0.005033931517079822 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 61.943 0 0 4.9933 0 0 63.999537239287584 0 63.999537239287584 0 47.46244009238126 0 0 0 2.079689690656103 0 0 0 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9933 - 551 + NaN NaN 144533.7 NaN 12370 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15821 68.58 NaN 202640 35 0 10492 0.261 + 31696 VYKVPPFTF 9 67 549.3049660462365 1096.5953791592729 2 549.3052978515625 MULTI HCD FTMS 0 0 0 15816 50148.96875 0.4959465548497636 15 -0.3950653076171875 5 Unmodified _VYKVPPFTF_ ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 43.77239144664712 0.04802738721622131 2 VYKV 4 5 61.414 0 0 5.6005 0 0 0 604.2771887743796 604.2771887743796 46.60728139283883 0 0 0 0 1.4247425010840047 2 0 0 + VYKV 5.6005 + + 96 + NaN NaN 117346.9 NaN 12371 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15822 68.583 NaN 119900 35 0 26849 0.261 + 26348 SSHLPTLLL 9 45 490.792350640462 979.5701483477241 2 490.7920227050781 MULTI HCD FTMS 0 0 0 15816 23467.423828125 0.052723965421515064 17 -0.44753265380859375 6 Unmodified _SSHLPTLLL_ ENST00000357258.8_2_3:114050167-114050428:-|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 7 25.969 0 0 2.6511 0 0 735.3917624573337 0 735.3917624573337 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6511 + + 7 NaN NaN 111921.8 NaN 12372 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15823 68.587 NaN 88764 35 0 5922.3 0.261 + 13708 KYPLLLDNI 9 45 544.821142033334 1087.627731133468 2 544.8215942382812 MULTI HCD FTMS 0 0 0 15816 29399.177734375 0.3914319798220491 11 -0.29491424560546875 7 Unmodified _KYPLLLDNI_ ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12 16.149105407346934 0.22083165093524068 2 {I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 4 5 27.747 0 0 2.5512 0 0 614.3788430492867 0 614.3788430492867 0 27.74735947860492 0 0 0 1 0 0.3054621874040891 0 + {I|L}D{[QV]|[N{I|L}]|[RA]|[KV]} 2.5512 + + 9 + NaN NaN 114242.1 NaN 12373 3448 15816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15825 68.592 NaN 1039400 35 0 133060 0.326 + 17720 MAWKYSNRT 9 99 578.781980643606 1155.5494083540118 2 579.284912109375 MULTI HCD FTMS 0 0 0 15824 448002.6875 0.9079192042885752 2 -0.05896759033203125 1 Unmodified _MAWKYSNRT_ ENSG00000123607|ENST00000243344|TTC21B;ENST00000497425.1_1_2:166736340-166740450:-|nuORF 19.256988751693697 0.19398022840297344 2 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 8 9 39.602 0 0 3.4271 0 0 235.0739537080845 0 235.0739537080845 0 17.118806617312643 0 0 0 1.3494850021680094 0 0.2742275032520141 0 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 3.4271 - 618 + NaN NaN 247282.8 NaN 12374 3449 15824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15826 68.596 NaN 343110 35 0 17260 0.261 + 6359 FPFYYEIKM 9 65 627.298453891388 1252.582354849576 2 627.2994384765625 MULTI HCD FTMS 0 0 0 15824 156552.03125 0.16566481801908242 25 -0.6378021240234375 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 67.83816525789305 0.009787749748478139 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 75.927 0 0 6.0616 6.0616 84.422 0 0 0 2.882418650521359 0.8618842694768603 0.8618842694768603 0.8618842694768603 0 2.584121882396211 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYKYPE;[Y{M(Oxidation (M))|F}]PKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE;[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}Y[YK]PE;[RH]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YKNK{M(Oxidation (M))|F} 6.0616;5.9928;5.8315;5.3533;4.5545;4.2541;3.721;3.3574;2.4033;1.4063 +;+;-;-;-;-;-;-;-;- + 475 + NaN NaN 143009.5 NaN 12375 3449 15824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15827 68.6 NaN 642920 35 0 99469 0.262 -1 QMEYLDMV 8 94 530.719183982108 1059.423815031016 2 530.7194213867188 MULTI HCD FTMS 0 0 0 15824 38440.32421875 0.2553092907074246 2 -0.05896759033203125 3 2 Oxidation (M) _QM(Oxidation (M))EYLDM(Oxidation (M))V_ ENSG00000021461|ENST00000354829|CYP3A43;ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43 14.581692164780916 0.48650662947107914 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]H{I|L}D{M(Oxidation (M))|F} 8 -1 36.375 0 0 3.4335 0 0 0 113.96506514133503 113.96506514133503 19.648415687162952 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]H{I|L}D{M(Oxidation (M))|F} 3.4335 - 279 NaN NaN 187326.1 NaN 12376 3449 15824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15828 68.603 NaN 210740 35 0 25668 0.261 + -1 QRSTISKM 8 54 483.7558641800139 965.4971754268278 2 483.75567626953125 MULTI HCD FTMS 0 0 0 15824 71073.71875 0.8603092822988949 2 -0.05896759033203125 4 Oxidation (M) _QRSTISKM(Oxidation (M))_ REV__ENST00000568432.1_1_15:42556388-42560176:-|nuORF 18.1463463914782 0.46027927471454505 2 S{M(Oxidation (M))|F}Q 3 -1 29.169 0 0 3.0211 0 0 585.3274655075584 0 585.3274655075584 0 12.129843661361406 0 0 0 0.9247425010840047 0 0 0 S{M(Oxidation (M))|F}Q 3.0211 - 77 NaN NaN 124172.1 NaN 12377 3449 15824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15829 68.606 NaN 183290 35 0 25791 0.261 + 11066 IYGIDTSIAI 10 51 533.29507298037 1064.57559302754 2 533.294921875 MULTI HCD FTMS 0 0 0 15824 29049.705078125 0.4237397222074393 4 -0.101593017578125 5 Unmodified _IYGIDTSIAI_ REV__tr|U7SWM2|U7SWM2_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01096PE=4SV=1 6.723162845929126 0.4397169348982109 2 A{I|L} 2 -1 18.583 0 0 1.7456 0 0 862.4422138951313 0 862.4422138951313 0 9.631068929195406 0 0 0 0 0 0 0 A{I|L} 1.7456 + + 5 NaN NaN 109422.4 NaN 12378 3449 15824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15830 68.61 NaN 391270 35 0 51541 0.261 -1 FPIEAGDMF 9 78 521.7313842476061 1041.4482155620121 2 521.7313842773438 MULTI HCD FTMS 0 0 0 15824 59220.72265625 0.39946137221266403 -10 0.255279541015625 6 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 26.766 0 0 2.5701 0 0 729.3307972638687 0 729.3307972638687 0 13.51215268222763 0 0 0 0.7302046884880938 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5701 + + 276 NaN NaN 144834.2 NaN 12379 3449 15824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15832 68.614 NaN 2127800 35 0 259530 0.327 + 11964 KFNPVSFTW 9 101 563.2902527931236 1124.5659526530471 2 563.2902221679688 MULTI HCD FTMS 0 0 0 15831 1373023.875 0.7174394987729803 3 -0.07871246337890625 1 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 149.91393105778798 8.917243180786556E-06 2 ENPVS{M(Oxidation (M))|F}TW 8 2 94.551 0 0 8.4077 0 0 146.10495552097626 0 146.10495552097626 0 62.540915035013846 0 0 0 3.110924374808178 0 2.1861818737241734 0 ENPVS{M(Oxidation (M))|F}TW 8.4077 - 4776 + NaN NaN 406287.3 NaN 12380 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15833 68.619 NaN 300630 35 0 25998 0.261 + 4568 EYLLKAYVL 9 69 556.3234786183602 1110.6324043035204 2 556.3237915039062 MULTI HCD FTMS 0 0 0 15831 71012.09375 0.21778433362251293 9 -0.24588775634765625 2 Unmodified _EYLLKAYVL_ ENSG00000116406|ENST00000318130|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 20.453626601364224 0.18364154288633264 2 K{I|L}EVVDP{M(Oxidation (M))|F} 8 8 44.334 0 0 3.9918 0 0 165.11458690543515 0 165.11458690543515 0 17.754537344402905 0 0 0 0 0 0 0 K{I|L}EVVDP{M(Oxidation (M))|F} 3.9918 - 484 + NaN NaN 135259.6 NaN 12381 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15834 68.622 NaN 329200 35 0 36000 0.261 -1 IPDEIIDMV 9 72 530.7649077259115 1059.5152625186229 2 530.7650146484375 MULTI HCD FTMS 0 0 0 15831 102565.5625 0.6459689845737686 -4 0.10138702392578125 3 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 32.30548876998284 0.10066689432505688 2 H{I|L}D{M(Oxidation (M))|F}V 5 -1 46.058 0 0 4.3471 0 0 430.2221852033219 0 430.2221852033219 0 30.573193899842437 0 0 0 1.3494850021680094 0 0 0 H{I|L}D{M(Oxidation (M))|F}V 4.3471 - 98 NaN NaN 146161.2 NaN 12382 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15835 68.626 NaN 178850 35 0 21398 0.261 + 32092 VYRNYAML 8 47 515.2650351774098 NaN 0 515.2547607421875 PEAK HCD FTMS 0 0 0 15831 17050.138671875 1 0 0 4 Unmodified _VYRNYAML_ REV__OR8J1|p.D121N|1|0.11|ENSG00000172487|chr11:56360607-56360607|G/A|missense_variant 10.183394434864962 0.38822285293237185 2 YG{[SA]|[TG]}[W{I|L}]S 7 -1 11.725 0 0 1.14 0 0 99.09200775540701 162.05568872623283 261.14769648163985 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 YG{[SA]|[TG]}[W{I|L}]S 1.14 - 29 + NaN NaN 124000 NaN 12383 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15836 68.629 NaN 218430 35 0 16219 0.261 + 2937 DYTIGFGKF 9 64 524.2590102761714 1046.5034676191426 2 524.2611083984375 MULTI HCD FTMS 0 0 0 15831 45813.875 0.4886036453537221 -3 0.07521820068359375 5 Unmodified _DYTIGFGKF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 85.64151623876279 0.004640175941193596 2 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L} 4 5 50.846 0 0 4.8587 0 0 0 551.2592714123645 551.2592714123645 22.174165578762484 0 0 0 0 1.5 2 0.805462187404089 0 + {[YD]|[{M(Oxidation (M))|F}M]}T{I|L} 4.8587 + + 231 NaN NaN 125808.6 NaN 12384 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15837 68.632 NaN 241850 35 0 34691 0.261 + 25927 SPAPSAVLTL 10 54 478.2766288742486 954.5387048152973 2 478.2767333984375 MULTI HCD FTMS 0 0 0 15831 61968.5703125 0.07587296441390777 -9 0.22917938232421875 6 Unmodified _SPAPSAVLTL_ HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|9|2|sense 27.628801355627647 0.2527626205058048 2 [QP]S[TP]V{I|L}T{I|L} 9 4 + 61.704 0 0 6.4643 6.4643 91.13 0 0 0 13.309932190414244 16.478174818886373 13.309932190414244 13.309932190414244 0 1.3807196863200843 1.154901959985743 0.3494850021680094 0 [QP]S[TP]V{I|L}T{I|L};[TP]N[TP]V{I|L}T{I|L};[EP][PG][KT]{I|L}T{I|L};[TP]GG[TP]V{I|L}T{I|L} 6.4643;5.0699;4.802;4.1053 -;-;-;- 150 NaN NaN 117514.2 NaN 12385 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15838 68.636 NaN 165600 35 0 21416 0.261 + 8642 HEVKQDFEKFL 11 41 473.91370726127394 1418.7192923840219 3 473.9134826660156 MULTI HCD FTMS 0 0 0 15831 26450.646484375 0.22916429905670357 -3 0.07521820068359375 7 Unmodified _HEVKQDFEKFL_ ENSG00000166262|ENST00000299338|FAM227B 1.9275035174196113 0.4104672908605315 2 T{I|L} 2 10 25.217 0 0 1.7774 0 0 1186.5737883342567 0 1186.5737883342567 0 25.21652514092061 0 0 0 0 0 0.4247425010840047 0 T{I|L} 1.7774 - 1 NaN NaN 130307 NaN 12386 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15839 68.639 NaN 160900 35 0 25388 0.261 + 16865 LYEVIQSTL 9 60 533.29507298037 1064.57559302754 2 533.2955322265625 MULTI HCD FTMS 0 0 0 15831 17542.419921875 0.25588625166935247 5 -0.13117218017578125 8 Unmodified _LYEVIQSTL_ ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;nc|ENSG00000159131|P22102-2|GART 7.289230182591677 0.29575926068275815 2 A{I|L} 2 8 19.464 0 0 1.8283 0 0 862.4463978498062 0 862.4463978498062 0 4.859856381998782 0 0 0 0 0 0 0 A{I|L} 1.8283 - 41 NaN NaN 112975 NaN 12387 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15840 68.642 NaN 62476 35 0 13351 0.262 + 10270 IKEKEKQKFF 10 32 442.2589116453977 1323.7549055363932 3 442.258544921875 MULTI HCD FTMS 0 0 0 15831 9125.7314453125 0.045709330624072536 15 -0.39850616455078125 9 Unmodified _IKEKEKQKFF_ REV__ENSG00000164114|ENST00000311277|MAP9 1.7422754331352037 0.46608156381052757 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 1.6612 0 0 1158.6760308799462 0 1158.6760308799462 0 18.010299956639813 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6612 + + 5 + NaN NaN 99931.4 NaN 12388 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15841 68.646 NaN 81622 35 0 12240 0.261 + 14695 LGYTHALSL 9 45 487.76896683087296 973.5233807285459 2 487.768798828125 MULTI HCD FTMS 0 0 0 15831 26740.791015625 0.20245926322273539 13 -0.346038818359375 10 Unmodified _LGYTHALSL_ REV__ENSG00000151779|ENST00000281513|NBAS;REV__nc|ENSG00000151779|A2RRP1-2|NBAS 10.073929032068715 0.27331982688540024 2 A{[TV]|[{I|L}S]}{I|L} 4 -1 23.188 0 0 2.3818 0 0 571.2744007794937 0 571.2744007794937 0 23.187587626244124 0 0 0 0.8494850021680094 0 0 0 A{[TV]|[{I|L}S]}{I|L} 2.3818 + + 7 NaN NaN 100498.3 NaN 12389 3450 15831 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15843 68.651 NaN 247020 35 0 38232 0.327 + 28060 TGPGPSLLTL 10 46 478.2766288742486 954.5387048152973 2 478.27630615234375 MULTI HCD FTMS 0 0 0 15842 115145.3671875 0.14098147339831824 -8 0.21276092529296875 1 Unmodified _TGPGPSLLTL_ REV__ENST00000279249.2_1_11:65082389-65088053:+|nuORF 27.628801355627647 0.2527626205058048 2 [QP]S[TP]V{I|L}T{I|L} 9 -1 + 53.918 0 0 5.6486 5.6486 89.893 0 0 0 3.9254497678533085 34.92197735323096 3.9254497678533085 13.789850105233299 0 1.4247425010840047 0 0.3807196863200844 0 [QP]S[TP]V{I|L}T{I|L};[QP]S[PS]{I|L}{I|L}T{I|L} 5.6486;4.204 -;- 121 NaN NaN 124073.6 NaN 12390 3451 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15844 68.655 NaN 104840 35 0 28875 0.261 + 13382 KYNHLNLFLF 10 34 436.90806517382003 1307.7023661216601 3 436.90802001953125 MULTI HCD FTMS 0 0 0 15842 18793.708984375 0.12767615776298316 10 -0.2485809326171875 2 Unmodified _KYNHLNLFLF_ ENSG00000103335|ENST00000301015|PIEZO1 1.9063754702782614 0.46521295622613185 2 {M(Oxidation (M))|F} 1 9 21.99 0 0 1.6816 0 0 1142.6232778421663 0 1142.6232778421663 0 20.395906230238126 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.6816 + + 2 + NaN NaN 110197.4 NaN 12391 3451 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15845 68.659 NaN 294350 35 0 22505 0.261 + -1 VYAYFMDMVM 10 78 643.2685887955294 1284.5226246578586 2 643.2681274414062 MULTI HCD FTMS 0 0 0 15842 48146.4921875 0.4090777781008227 -6 0.16699981689453125 3 Oxidation (M) _VYAYFMDMVM(Oxidation (M))_ REV__ENSG00000135537|ENST00000368977|AFG1L 10.823927491677226 0.4098686510432541 2 {M(Oxidation (M))|F}YVY 4 -1 36.063 0 0 2.8075 0 0 694.2809925763687 0 694.2809925763687 0 1.8813678342355047 0 0 0 0.7134679910804405 0 0 0 {M(Oxidation (M))|F}YVY 2.8075 - 135 NaN NaN 138793.8 NaN 12392 3451 15842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15847 68.664 NaN 1162800 35 0 165020 0.327 -1 FDNICPTPIL 10 94 595.3020854885212 NaN 0 595.3221435546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _FDNIC(Carbamidomethyl (C))PTPIL_ ADC-ISOC1|1|fusion;ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2 18.1463463914782 0.29565035219289926 2 PN{I|L}H{I|L}AV 7 -1 39.941 0 0 3.3604 0 0 165.04003785407286 276.098715377429 441.1387532315019 0 0 0 0 0 0.4247425010840047 0 0 0.4247425010840047 PN{I|L}H{I|L}AV 3.3604 - 733 + NaN NaN 268757.7 NaN 12393 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15848 68.668 NaN 1321900 35 0 313250 0.262 + 31545 VYGPLPQSF 9 87 504.26362326524537 1006.5126935972908 2 504.2636413574219 MULTI HCD FTMS 0 0 0 15846 299565.71875 0.24905857079641144 5 -0.14453125 2 Unmodified _VYGPLPQSF_ ENSG00000131143|ENST00000253452|COX4I1;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENST00000568339.5_1_16:85840315-85840477:+|nuORF 85.27202061508552 0.004649858145912257 2 [YV]APVPQS{M(Oxidation (M))|F} 9 2 + 62.36 0 0 6.1957 6.1957 86.279 0 0 0 7.205204015668571 7.205204015668571 7.205204015668571 4.810698215154709 0 2.160728139283883 1.3010299956639813 0.7134679910804405 0.3494850021680094 [YV]APVPQS{M(Oxidation (M))|F};[YV]G[{I|L}P]PQS{M(Oxidation (M))|F};[YV]{[QS]|[NT]}VPAP{M(Oxidation (M))|F};[YV]G[{I|L}P]P[AG]S{M(Oxidation (M))|F};[YV]APVP[AG]S{M(Oxidation (M))|F};[YV]APV{[QS]|[NT]}P{M(Oxidation (M))|F};[YV]G{[SA]|[TG]}VPAP{M(Oxidation (M))|F};[YV]APV{[SA]|[TG]}GP{M(Oxidation (M))|F};[YV]G[{I|L}P][SG]AP{M(Oxidation (M))|F};[YV]{[QS]|[NT]}[{I|L}P]GP{M(Oxidation (M))|F} 6.1957;5.7177;4.575;4.5649;4.5511;4.4521;4.3844;4.2615;4.2177;4.0971 -;+;-;-;-;-;-;-;-;- + 1189 + NaN NaN 305124.9 NaN 12394 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15849 68.672 NaN 905450 35 0 257510 0.261 + 14098 KYYQTPRLWLF 11 75 505.6099274015781 1513.8079528049343 3 505.6100158691406 MULTI HCD FTMS 0 0 0 15846 176646.359375 0.6700915005282911 -1 0.012939453125 3 Unmodified _KYYQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 11.065280125700339 0.3606702632373656 2 K[DG]W{I|L}{M(Oxidation (M))|F} 6 7 38.531 0 0 2.5453 0 0 749.4089222638687 0 749.4089222638687 0 34.55136871872881 0 0 0 0.8252574989159953 0 0.4247425010840047 0 K[DG]W{I|L}{M(Oxidation (M))|F} 2.5453 - 49 NaN NaN 228549.7 NaN 12395 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15850 68.675 NaN 637420 35 0 79246 0.261 + 4569 EYLLKAYVL 9 72 556.3234786183602 1110.6324043035204 2 556.3055419921875 MULTI HCD FTMS 0 0 0 15846 68322.0625 0.20953437742114425 11 -0.2970123291015625 4 Unmodified _EYLLKAYVL_ ENSG00000116406|ENST00000318130|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 43.85829265575387 0.04763305254408404 2 [YV]DVVE{I|L}K 8 8 55.126 0 0 4.9635 0 0 0 162.0921602574073 162.0921602574073 2.691643401200281 0 0 0 0 0 1.6989700043360187 0 0 [YV]DVVE{I|L}K 4.9635 - 581 NaN NaN 191460.4 NaN 12396 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15851 68.678 NaN 435600 35 0 46209 0.261 + 13252 KYMDIEFDF 9 64 612.2680622783852 1222.5215716235703 2 612.2685546875 MULTI HCD FTMS 0 0 0 15846 185131.015625 0.060593960463582335 50 -1.3201141357421875 5 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 47.594388314883695 0.03493607795751234 2 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F} 9 5 + 62.145 0 0 5.0834 5.0834 84.048 0 0 0 8.96513953503316 45.718421963928435 8.96513953503316 3.7628749457997657 0 1.5 1.3979400086720375 0.7302046884880937 0 YYTE{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}D{M(Oxidation (M))|F};YYTE{I|L}D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V][YE]K;{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][YE]K 5.0834;4.7756;0.8645;0.5635 -;-;-;- 271 NaN NaN 165174.1 NaN 12397 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15852 68.682 NaN 471950 35 0 79634 0.261 + 7578 FYGTFDVHL 9 79 549.7664445371348 1097.5183361410695 2 549.7667236328125 MULTI HCD FTMS 0 0 0 15846 87342.5625 0.27437943510445456 -2 0.0490264892578125 6 Unmodified _FYGTFDVHL_ ENSG00000090054|ENST00000262554|SPTLC1 85.35673624503755 0.00464763827098139 2 {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}] 9 0 + 55.588 0 0 5.0649 5.0649 85.181 0 0 0 27.134928107446186 4.137342758552691 4.137342758552691 6.677805497702991 0 1.6549471895720984 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}];{M(Oxidation (M))|F}YSA{M(Oxidation (M))|F}DV[H{I|L}];[HV][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}TGYE;[HV][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}ASYE;{M(Oxidation (M))|F}YS{I|L}{I|L}[HD]{[CT]|[{M(Oxidation (M))|F}G]} 5.0649;4.4565;3.1234;2.515;0.69379 +;-;-;-;- + 479 + NaN NaN 169764.6 NaN 12398 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15853 68.685 NaN 321160 35 0 99857 0.261 -1 KYMDVQFDF 9 46 604.7681072670384 1207.5216616008768 2 604.7686157226562 MULTI HCD FTMS 0 0 0 15846 71603.125 0.020903289212337278 132 -3.4536514282226562 7 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 26.020703789607367 0.13554323117744113 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.8248 0 0 666.3062611310562 0 666.3062611310562 0 38.953650195120844 0 0 0 1.4247425010840047 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.8248 - 191 NaN NaN 141720.7 NaN 12399 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15854 68.688 NaN 190840 35 0 28977 0.263 + 18966 NAIPVDTVL 9 48 471.26955140606054 940.5245498789211 2 471.26904296875 MULTI HCD FTMS 0 0 0 15846 59147.0234375 0.39054404793236774 -1 0.012939453125 8 Unmodified _NAIPVDTVL_ ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 9.38312468134398 0.279288223203164 2 V{I|L} 2 7 20.969 0 0 2.2295 0 0 710.3599110334 0 710.3599110334 0 5.484550065040281 0 0 0 0 0 0 0 + V{I|L} 2.2295 + + 8 NaN NaN 126013.3 NaN 12400 3452 15846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15856 68.693 NaN 1786900 35 0 310550 0.327 + 29020 TYELRYFQI 9 93 616.819007517259 1231.623462101318 2 616.8192749023438 MULTI HCD FTMS 0 0 0 15855 537482.625 0.7663627524255496 6 -0.16717529296875 1 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 90.13494162714682 0.004522430935000059 2 [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L} 9 0 + 91.45 0 0 7.4251 7.4251 91.043 0 0 0 11.290871273845525 11.290871273845525 11.290871273845525 9.208187539523749 0 2.3807196863200843 2 0.75 0 + + [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YE]T{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RYQ{M(Oxidation (M))|F}{I|L};[YT]E{I|L}RQY{M(Oxidation (M))|F}{I|L};[YE]T{I|L}RY{M(Oxidation (M))|F}[AG]{I|L};[YT]E{I|L}RQ{M(Oxidation (M))|F}Y{I|L};[YT]E{I|L}RY[AG]{M(Oxidation (M))|F}{I|L};[YE]T{I|L}RYQ{M(Oxidation (M))|F}{I|L};[YT]E{I|L}RYQ{I|L}{M(Oxidation (M))|F} 7.4251;6.6775;6.4485;6.2744;5.7483;5.7008;5.6397;5.5268;5.2978;5.2434 +;-;-;-;-;-;-;-;-;- + 1845 NaN NaN 360893.3 NaN 12401 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15857 68.698 NaN 801800 35 0 107520 0.261 + 1173 AYLESFYKF 9 82 584.2894496602338 1166.5643463872675 2 584.289794921875 MULTI HCD FTMS 0 0 0 15855 573980.375 0.026448909511961306 38 -1.0165634155273438 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 147.05914393524117 1.1935124485855994E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 111.21 0 0 9.533 9.533 95.171 0 0 0 25.157942671832316 76.29416157934763 25.157942671832316 11.721675119240516 0 3.274227503252014 2 1.3851518780601921 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EYYAK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[Y{I|L}]AESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]ATD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]} 9.533;8.5282;8.3799;7.3751;7.1789;6.9809;6.356;5.9761;5.8279;5.5471 +;-;-;-;-;-;-;-;-;- + 1440 NaN NaN 211946.6 NaN 12402 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15858 68.701 NaN 2024800 35 0 449490 0.263 + 9024 HPELEHIIWTL 11 63 463.2504284833442 1386.7294560502326 3 463.25048828125 MULTI HCD FTMS 0 0 0 15855 908521.125 1 0 0 3 Unmodified _HPELEHIIWTL_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 17.04857598603903 0.30853761023565673 2 {I|L}WT{I|L} 4 7 45.433 0 0 3.2763 0 0 855.4217880478478 0 855.4217880478478 0 27.47425010840047 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + {I|L}WT{I|L} 3.2763 + + 121 NaN NaN 390547 NaN 12403 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15859 68.705 NaN 496960 35 0 64624 0.261 + 1420 AYQLMTDVF 9 66 552.2574020468604 1102.5002511605207 2 552.2576293945312 MULTI HCD FTMS 0 0 0 15855 197564.03125 0.8347780744768912 6 -0.16717529296875 4 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 81.89019881105858 0.005240739447516426 2 MCQ{I|L}{M(Oxidation (M))|F}TDV 8 3 54.339 0 0 4.9287 0 0 0 162.05613123111564 162.05613123111564 2.3957751657678727 0 0 0 0 2.4291746928241125 0 1.3494850021680094 0 MCQ{I|L}{M(Oxidation (M))|F}TDV 4.9287 - 784 + NaN NaN 181436.2 NaN 12404 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15860 68.708 NaN 301300 35 0 72862 0.261 + 10080 IFFENHPYF 9 71 607.2872616918412 1212.5599704504823 2 607.28759765625 MULTI HCD FTMS 0 0 0 15855 195475.9375 0.08255442479142147 31 -0.8133316040039062 5 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 69.10491478415734 0.009377850133389008 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F} 9 0 + 65.199 0 0 5.377 5.377 87.49 0 0 0 47.24046640435233 9.009461452434238 9.009461452434238 9.208187539523749 0 2.079689690656103 0 0 0 + + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}ENHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGGHPY{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EN[RD]{[WS]|[C(Carbamidomethyl (C)){I|L}]};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EGG[RD]{[WS]|[C(Carbamidomethyl (C)){I|L}]} 5.377;4.6176;3.5235;2.7641 +;-;-;- + 306 + NaN NaN 141518.5 NaN 12405 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15861 68.711 NaN 343880 35 0 16803 0.261 + 16217 LPVVDFNEM 9 74 540.2576094950099 1078.5006660568197 2 540.2576293945312 MULTI HCD FTMS 0 0 0 15855 99050.84375 0.7352402575870588 -2 0.04262542724609375 6 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 89.40071534611396 0.0045416704840156395 2 VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6 3 67.952 0 0 6.3006 0 0 309.20535068329644 0 309.20535068329644 0 40.30975702852399 0 0 0 2.6549471895720984 0 1.0774509799928715 0.6549471895720984 + VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6.3006 + + 221 + NaN NaN 150301 NaN 12406 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15862 68.715 NaN 442360 35 0 119520 0.261 -1 MYIHTYRHIYI 11 60 509.2595456623595 1524.7568075872787 3 509.259521484375 MULTI HCD FTMS 0 0 0 15855 167413.34375 1 0 0 7 Oxidation (M) _M(Oxidation (M))YIHTYRHIYI_ ENST00000415128.6_1_6:142623466-142692070:+|nuORF 2.6312355333042263 0.4073809613003177 2 {I|L}{I|L} 2 -1 23.271 0 0 1.5262 0 0 1280.5768989598278 0 1280.5768989598278 0 12.302046884880937 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 1.5262 - 17 NaN NaN 161169.8 NaN 12407 3453 15855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15864 68.719 NaN 699230 35 0 195040 0.327 + 24621 RYLPTGSFPF 10 64 592.8085510866069 1183.6025492400138 2 592.8090209960938 MULTI HCD FTMS 0 0 0 15863 289724.875 0.04532780398291897 30 -0.7870941162109375 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 57.72198328787511 0.049706386133502735 2 R{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4 6 38.66 0 0 3.2663 0 0 618.2845936505875 0 618.2845936505875 0 29.055781609639766 0 0 0 0.9247425010840047 0 0 0.3494850021680094 R{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.2663 - 116 NaN NaN 218551.2 NaN 12408 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15865 68.724 NaN 820520 35 0 50564 0.261 + 20468 PAWELPFSW 9 100 566.7768371423638 1131.5391213515275 2 567.2789916992188 MULTI HCD FTMS 0 0 0 15863 310997.15625 0.8877528327932758 39 -1.0460433959960938 2 Unmodified _PAWELPFSW_ REV__nc|ENSG00000169905|Q9H496|TOR1AIP2 15.847184025352803 0.2234401846867398 2 {[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][KP]S{[DA]|[EG]} 10 -1 + 35.224 0 0 3.1129 3.1129 85.73 0 0 0 8.18895217140689 -1.4473404812020618 -1.4473404812020618 9.899093853315073 0 0.7302046884880937 2 0.6549471895720984 0 {[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}][KP]S{[DA]|[EG]};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K{[NV]|[RG]};{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}]RRW;{[YD]|[{M(Oxidation (M))|F}M]}S[H{I|L}]{[MG]|[TS]}P{[NV]|[RG]};{[{M(Oxidation (M))|F}C]|[YS]}D[H{I|L}][KP]S[VS];{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}K{[NV]|[RG]};[SG]{M(Oxidation (M))|F}[KP][H{I|L}]D[MT];{[{M(Oxidation (M))|F}C]|[YS]}{[QV]|[N{I|L}]|[RA]|[KV]}[YT]WW 3.1129;2.2381;2.1651;1.916;1.7671;0.89227;0.85075;0.21479 -;-;-;-;-;-;-;- 1126 NaN NaN 215052.1 NaN 12409 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15866 68.727 NaN 719170 35 0 39763 0.261 + 32256 VYTVVDEMF 9 91 559.7575340496687 1117.5005151661373 2 559.7579345703125 MULTI HCD FTMS 0 0 0 15863 231578.203125 0.6881718158424797 7 -0.179718017578125 3 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 125.62461146993168 0.0008703235425492373 2 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 72.889 0 0 6.5225 6.5225 93.531 0 0 0 14.71726222832956 39.32258126592543 14.71726222832956 36.87266149278787 0 2.055462187404089 1.3979400086720375 1.805462187404089 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}V][VS]{[YD]|[{M(Oxidation (M))|F}M]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}T][DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}V]{[ES]|[DT]|[{I|L}C]}[{M(Oxidation (M))|F}T]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T][{I|L}A]{[YD]|[{M(Oxidation (M))|F}M]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}V]{[ES]|[DT]|[{I|L}C]}{[ET]|[MV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.5225;3.223;3.052;2.8799;1.9012;1.8669 +;-;-;-;-;- + 513 NaN NaN 210207 NaN 12410 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15867 68.731 NaN 478920 35 0 25524 0.261 + 27218 SYNNFFRMF 9 84 621.2737767427004 1240.5330005522007 2 621.2738037109375 MULTI HCD FTMS 0 0 0 15863 212166.515625 0.03842377804375623 90 -2.2940750122070312 4 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 100.0907132914201 0.004261551473353346 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 84.28 0 0 6.7938 6.7938 89.894 0 0 0 7.816658315635081 63.47759145855257 7.816658315635081 9.208187539523749 0 3 0 0.3054621874040891 1.4604093769761874 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[YC]|[HE]}[DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[YC]|[HE]}[QT][YN]R{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}]{[CP]|[EA]};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}]{[CP]|[EA]};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}[H{I|L}]{[CP]|[EA]};{[{M(Oxidation (M))|F}C]|[YS]}N[HT][VP]{M(Oxidation (M))|F}YN 6.7938;6.0515;6.0515;4.7596;3.9231;3.2851;3.0743;2.3356;2.3356;1.7044 +;-;-;-;-;-;-;-;-;- + 1007 NaN NaN 180876.8 NaN 12411 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15868 68.734 NaN 876220 35 0 70127 0.261 -1 HWTCLLMKM 9 102 597.7759442272202 NaN 0 597.79541015625 PEAK HCD FTMS 0 0 0 15863 14705.501953125 0.4029264277226799 -2 0.0559234619140625 5 2 Oxidation (M) _HWTCLLM(Oxidation (M))KM(Oxidation (M))_ ENST00000554215.5_1_14:69584939-69588960:-|nuORF;ENST00000557386.5_1_14:69584939-69588960:-|nuORF 14.838274106304384 0.2220448417561729 2 Y{I|L}E 3 -1 18.188 0 0 1.5238 0 0 147.03240495659026 638.2937522955494 785.3261572521396 0 0 0 0 0 0 0 0.5 0 Y{I|L}E 1.5238 - 397 + NaN NaN 226737.8 NaN 12412 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15869 68.737 NaN 270620 35 0 16812 0.261 + 22812 QYLKILTSL 9 79 539.8288660729991 1077.643179212798 2 539.8290405273438 MULTI HCD FTMS 0 0 0 15863 58486.08984375 0.27909852328924256 7 -0.179718017578125 6 Unmodified _QYLKILTSL_ ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1 27.628801355627647 0.12213550946336599 2 EN[HT]{I|L}TS{I|L} 8 5 39.995 0 0 3.7114 0 0 164.18909093330427 0 164.18909093330427 0 12.4254192068773 0 0 0 1.6237125054200234 0 0.9386218330464625 0.6747425010840047 EN[HT]{I|L}TS{I|L} 3.7114 - 214 + NaN NaN 136588.5 NaN 12413 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15870 68.741 NaN 187150 35 0 26339 0.261 -1 MYLKQILYL 9 58 600.83845813544 1199.6623633376798 2 601.3397216796875 MULTI HCD FTMS 0 0 0 15863 82279.828125 0.7118099777856298 -11 0.28162384033203125 7 Oxidation (M) _M(Oxidation (M))YLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 16.942295170755138 0.21397866736869717 2 {I|L}Y{I|L} 3 -1 31.198 0 0 2.6006 0 0 792.42152262133 0 792.42152262133 0 9.771212547196626 0 0 0 0.5 0 0 0 {I|L}Y{I|L} 2.6006 + + 30 NaN NaN 128740.7 NaN 12414 3454 15863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15872 68.746 NaN 451760 35 0 53429 0.327 + -1 CHQPQIGIGF 10 76 578.781980643606 1155.5494083540118 2 579.284423828125 MULTI HCD FTMS 0 0 0 15871 128367.9453125 0.26014960627727113 8 -0.21486663818359375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))HQPQIGIGF_ REV__ENSG00000137177|ENST00000259711|KIF13A;REV__KIF13A|p.Q732Hfs*8|1|0.29|ENSG00000137177|chr6:17805583-17805584|-/CCATCTGAAAATATGTG|frameshift_variant;REV__KIF13A|p.V733Gfs*14|1|0.29|ENSG00000137177|chr6:17805581-17805582|-/C|frameshift_variant;REV__nc|ENSG00000137177|Q9H1H9-2|KIF13A;REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A;REV__nc|ENSG00000137177|Q9H1H9-4|KIF13A 10.073929032068715 0.4168838835836452 2 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 8 -1 30.099 0 0 2.6047 0 0 235.07385058141762 0 235.07385058141762 0 13.271599310825053 0 0 0 1.1989700043360187 0 0.3494850021680094 0 T{M(Oxidation (M))|F}S[H{I|L}]{I|L}G{M(Oxidation (M))|F} 2.6047 - 153 + NaN NaN 147952.7 NaN 12415 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15873 68.75 NaN 207820 35 0 10614 0.261 + 6360 FPFYYEIKM 9 61 627.298453891388 1252.582354849576 2 627.2985229492188 MULTI HCD FTMS 0 0 0 15871 121321.90625 0.12838397151512163 31 -0.819793701171875 2 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 59.368380827593164 0.01846506874148156 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 70.64 0 0 5.6395 5.6395 85.388 0 0 0 4.955678082598922 4.955678082598922 4.955678082598922 4.955678082598922 0 2.221848749616356 0 0.3807196863200844 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YQ{[QN]|[E{I|L}]|[KN]}[Y{M(Oxidation (M))|F}];{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[AG]{[QN]|[E{I|L}]|[KN]}[Y{M(Oxidation (M))|F}];[RH]N{M(Oxidation (M))|F}[{I|L}A]W[Y{M(Oxidation (M))|F}];[RH]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YKNK{M(Oxidation (M))|F};[RH]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YKGGK{M(Oxidation (M))|F} 5.6395;5.2439;4.566;4.3074;3.4925;2.7573;1.3819;1.1905;0.45536 +;-;+;-;-;-;-;-;- + 381 + NaN NaN 118079.4 NaN 12416 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15874 68.754 NaN 221920 35 0 43777 0.262 + 2938 DYTIGFGKF 9 61 524.2590102761714 1046.5034676191426 2 524.7586669921875 MULTI HCD FTMS 0 0 0 15871 50803.33984375 0.42789971601787 1 -0.0295257568359375 3 Unmodified _DYTIGFGKF_ ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|1|fusion;ITGB4-SAP30BP|2|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-5|ITGB4 39.94969957227396 0.06557568441294001 2 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L}AT{M(Oxidation (M))|F}A 8 5 54.646 0 0 5.2218 0 0 0 161.05700558663764 161.05700558663764 20.718421963928435 0 0 0 0 1.305462187404089 1.6989700043360187 0.4247425010840047 0 {[YD]|[{M(Oxidation (M))|F}M]}T{I|L}AT{M(Oxidation (M))|F}A 5.2218 - 183 NaN NaN 136435 NaN 12417 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15875 68.757 NaN 197460 35 0 36514 0.261 + 15548 LPDPRSRH 8 50 489.26773786255757 976.5209227919152 2 489.2677307128906 MULTI HCD FTMS 0 0 0 15871 50603.63671875 0.3212982227683511 -10 0.2620849609375 4 Unmodified _LPDPRSRH_ ENST00000375446.4_1_9:95884160-95884508:-|nuORF 25.399314129420986 0.40691472774782006 2 {I|L}PD 3 5 53.416 0 0 5.4701 0 0 0 648.3298433893186 648.3298433893186 38.95242492728684 0 0 0 0 0.7742275032520141 1.5228787452803376 0.4247425010840047 0 + {I|L}PD 5.4701 + + 57 + NaN NaN 135937.6 NaN 12418 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15876 68.76 NaN 180960 35 0 7550.7 0.261 + 20292 NYNFDFRSW 9 56 624.7754288089017 1247.5363046846032 2 624.7755126953125 MULTI HCD FTMS 0 0 0 15871 31987.248046875 0.414305527840976 1 -0.0295257568359375 5 Unmodified _NYNFDFRSW_ ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A 32.037481411007896 0.10189719824197178 2 [YN]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F}RSW 9 0 + 71.098 0 0 5.699 5.699 88.061 0 0 0 50.38418440905893 14.09256854528806 14.09256854528806 9.208187539523749 0 1.3807196863200843 1.6989700043360187 0 0 + + [YN]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F}RSW;[YN]GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F}RSW;[YN]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YQ]R{M(Oxidation (M))|F}D{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]N[WE][H{I|L}]SW;[YN]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}S[VG]{M(Oxidation (M))|F}D{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]N[HN]{[SA]|[TG]}RSW;[YN]N[H{I|L}][WE]SW;[YQ]R{M(Oxidation (M))|F}D{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.699;4.9609;3.7581;3.4579;3.1573;3.0235;2.8645;2.8623;2.7748;2.7198 +;-;-;-;-;-;-;-;-;- + 276 + NaN NaN 127740.6 NaN 12419 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15877 68.764 NaN 163630 35 0 12284 0.261 + 10357 ILWGGDALQI 10 62 543.3029854467579 1084.5914179603158 2 543.303955078125 MULTI HCD FTMS 0 0 0 15871 31012.40234375 0.018290237026294454 42 -1.1206207275390625 6 Unmodified _ILWGGDALQI_ REV__ENSG00000139618|ENST00000380152|BRCA2 11.494710602746466 0.4035943721457025 2 {I|L}Q{I|L} 3 -1 29.693 0 0 2.7377 0 0 712.3558827130875 0 712.3558827130875 0 15.713337517843655 0 0 0 0.3494850021680094 0 0 0 {I|L}Q{I|L} 2.7377 + + 18 NaN NaN 121632.4 NaN 12420 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15878 68.767 NaN 200780 35 0 10075 0.261 + 32741 WQQQLTALDWI 11 62 467.911766261333 1400.713469384199 3 467.9102783203125 MULTI HCD FTMS 0 0 0 15871 28946.994140625 0.5501995229802242 -2 0.052459716796875 7 Unmodified _WQQQLTALDWI_ REV__ENST00000547407.5_1_16:706354-706850:+|nuORF 5.523293073838413 0.3946973793746473 2 T{I|L} 2 -1 19.464 0 0 1.3896 0 0 1168.5710009882177 0 1168.5710009882177 0 15.969100130080562 0 0 0 0 0 0 0 T{I|L} 1.3896 - 12 NaN NaN 123245 NaN 12421 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15879 68.77 NaN 94722 35 0 15664 0.261 -1 PGEPMEKY 8 44 483.7155308866356 965.4165088400712 2 483.7286071777344 MULTI HCD FTMS 0 0 0 15871 9129.1767578125 0.09671478467424388 18 -0.46100616455078125 8 Oxidation (M) _PGEPM(Oxidation (M))EKY_ ENSG00000198870|ENST00000371957|STKLD1;nc|ENSG00000198870|Q8NE28-3|STKLD1 4.75600775471527 0.5349361699807423 2 S[C(Carbamidomethyl (C))D] 3 -1 8.9524 0 0 0.92731 0 0 585.326463767775 0 585.326463767775 0 5.853481135844875 0 0 0 0 0 0 0 S[C(Carbamidomethyl (C))D] 0.92731 - 2 NaN NaN 101106 NaN 12422 3455 15871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15881 68.775 NaN 789640 35 0 89267 0.327 + 11965 KFNPVSFTW 9 85 563.2902527931236 1124.5659526530471 2 563.2901611328125 MULTI HCD FTMS 0 0 0 15880 394071.71875 0.20591238180807808 9 -0.2378082275390625 1 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 118.0683919894846 0.0016252157255221692 2 ENPVS{M(Oxidation (M))|F}TW 8 2 87.522 0 0 7.7827 0 0 146.10215978370962 0 146.10215978370962 0 66.76161308306214 0 0 0 2.8807196863200843 0 2.1025684359364405 0 ENPVS{M(Oxidation (M))|F}TW 7.7827 - 1000 + NaN NaN 202304 NaN 12423 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15882 68.78 NaN 804000 35 0 135750 0.262 + 15392 LPDGQVITI 9 53 478.2766288742486 954.5387048152973 2 478.27655029296875 MULTI HCD FTMS 0 0 0 15880 408133.375 0.4997095928039622 -3 0.0819854736328125 2 Unmodified _LPDGQVITI_ ACTG2|p.E242Q|1|0.26|ENSG00000163017|chr2:73914790-73914790|G/C|missense_variant;ENSG00000075624|ENST00000646664|ACTB;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP 45.69961567697781 0.039180348357221985 2 V{I|L}T{I|L} 4 5 48.928 0 0 5.1258 0 0 510.2434764143534 0 510.2434764143534 0 4.758950235313861 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + V{I|L}T{I|L} 5.1258 + + 159 NaN NaN 212520.9 NaN 12424 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15883 68.783 NaN 467440 35 0 41378 0.261 -1 IPDEIIDMV 9 69 530.7649077259115 1059.5152625186229 2 530.7653198242188 MULTI HCD FTMS 0 0 0 15880 113459.8359375 0.7145822947195679 2 -0.04575347900390625 3 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 37.97399986684836 0.07464525285885698 2 {I|L}{I|L}D{M(Oxidation (M))|F}V 5 -1 46.999 0 0 4.4359 0 0 454.20677382636876 0 454.20677382636876 0 30.80137417560573 0 0 0 1.4247425010840047 0 0 0 {I|L}{I|L}D{M(Oxidation (M))|F}V 4.4359 + + 90 NaN NaN 157148.4 NaN 12425 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15884 68.786 NaN 564330 35 0 77969 0.261 + 6447 FPIEAGDMF 9 70 521.7313842476061 1041.4482155620121 2 521.7310791015625 MULTI HCD FTMS 0 0 0 15880 82942.34375 0.5594707555533821 -3 0.0819854736328125 4 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 71.13359017698441 0.008721403657255008 2 EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 48.292 0 0 4.637 0 0 357.20690007927084 0 357.20690007927084 0 42.8076778555969 0 0 0 2.305462187404089 0 0.6643943297944485 0 + EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.637 + + 125 + NaN NaN 179600 NaN 12426 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15885 68.79 NaN 304040 35 0 34747 0.261 -1 VYQHDFCGPY 10 62 643.2685887955294 1284.5226246578586 2 643.269775390625 MULTI HCD FTMS 0 0 0 15880 91706.8046875 0.7791889750179655 -1 0.0295257568359375 5 Carbamidomethyl (C) _VYQHDFC(Carbamidomethyl (C))GPY_ ENSG00000172324|ENST00000302040|OR5A2 13.90604991867851 0.3810395177745597 2 {M(Oxidation (M))|F}YVY 4 -1 42.423 0 0 3.3026 0 0 694.2823568654035 0 694.2823568654035 0 7.985775332874283 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}YVY 3.3026 - 81 NaN NaN 153237.4 NaN 12427 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15886 68.793 NaN 257650 35 0 25616 0.262 -1 AYQLMTDVF 9 59 552.2574020468604 1102.5002511605207 2 552.2398071289062 MULTI HCD FTMS 0 0 0 15880 44950.73828125 0.18993280563936943 9 -0.2378082275390625 6 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 29.081581746732265 0.1154664336125038 2 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 8 -1 48.889 0 0 4.4343 0 0 165.0455799787125 0 165.0455799787125 0 34.94850021680094 0 0 0 0.5 0 0.4247425010840047 0 QS{I|L}[QT]SQ{M(Oxidation (M))|F} 4.4343 - 306 NaN NaN 144151.7 NaN 12428 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15887 68.796 NaN 315400 35 0 72009 0.261 + -1 EMYRVKRKELF 11 54 505.6099274015781 1513.8079528049343 3 505.944091796875 MULTI HCD FTMS 0 0 0 15880 50463.9140625 0.23511622624861955 7 -0.18534088134765625 7 Oxidation (M) _EM(Oxidation (M))YRVKRKELF_ REV__ENST00000564980.1_1_16:29830785-29832247:-|nuORF 6.623454094837244 0.3898724468670146 2 {I|L}{M(Oxidation (M))|F} 2 -1 29.024 0 0 1.9173 0 0 1235.6474608317737 0 1235.6474608317737 0 25.924778212679485 0 0 0 0.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9173 + + 26 NaN NaN 136364.3 NaN 12429 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15888 68.8 NaN 136700 35 0 5642.1 0.261 -1 QYVYWLHML 9 44 634.8101208564551 1267.6056887797101 2 634.810791015625 MULTI HCD FTMS 0 0 0 15880 26647.294921875 0.060592734806115545 21 -0.534942626953125 8 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 14.581692164780916 0.23437375358055648 2 {I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 6 -1 28.416 0 0 2.2417 0 0 415.1878834455094 0 415.1878834455094 0 19.83288122256525 0 0 0 0 0 0 0 {I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 2.2417 - 38 NaN NaN 112822.8 NaN 12430 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15889 68.803 NaN 101230 35 0 11902 0.263 -1 IRMPCSVL 8 48 496.258574188444 990.502595443688 2 496.2587585449219 MULTI HCD FTMS 0 0 0 15880 36656.21875 0.5526173556153426 2 -0.04575347900390625 9 Carbamidomethyl (C),Oxidation (M) _IRM(Oxidation (M))PC(Carbamidomethyl (C))SVL_ ENSG00000177324|ENST00000380033|BEND2;nc|ENSG00000177324|Q8NDZ0-2|BEND2 6.723162845929126 0.5320176132289695 2 V{I|L} 2 -1 20.969 0 0 2.117 0 0 760.335252830275 0 760.335252830275 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.117 + + 1 NaN NaN 104667.6 NaN 12431 3456 15880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15891 68.808 NaN 501960 35 0 49584 0.327 + -1 YVSIVMAIFM 10 82 595.3020854885212 NaN 0 595.3221435546875 PEAK HCD FTMS 0 0 0 15890 29484.01171875 0.6447041191873416 4 -0.0911102294921875 1 Oxidation (M) _YVSIVMAIFM(Oxidation (M))_ REV__ENST00000358757.5_1_8:74722788-74737395:-|nuORF 13.90604991867851 0.3282826376286837 2 NVA{I|L} 4 -1 20.538 0 0 1.728 0 0 165.03839137892766 623.2933443658811 788.3317357448088 0 0 0 0 0 0 0 0 0.3807196863200844 NVA{I|L} 1.728 - 370 + NaN NaN 167975.3 NaN 12432 3457 15890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15892 68.812 NaN 630290 35 0 62538 0.261 + -1 CGKKWCIFG 9 88 578.2772306821804 NaN 0 578.2769775390625 PEAK HCD FTMS 0 0 0 15890 94114.8828125 0.16863351795798467 10 -0.25701904296875 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GKKWC(Carbamidomethyl (C))IFG_ REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__nc|ENSG00000140836|Q15911-2|ZFHX3 16.942295170755138 0.2079222001251384 2 H{I|L}G 3 -1 27.307 0 0 2.3652 0 0 682.2888230813545 162.05567346744377 844.3444965487982 0 0 0 0 0 1.3494850021680094 0 0 0 H{I|L}G 2.3652 - 115 + NaN NaN 202828.7 NaN 12433 3457 15890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15893 68.816 NaN 141440 35 0 24297 0.261 + 33805 YLHYLIMI 8 56 533.29507298037 1064.57559302754 2 533.3087768554688 MULTI HCD FTMS 0 0 0 15890 8250.21875 0.12034357635899451 11 -0.28968048095703125 3 Unmodified _YLHYLIMI_ REV__ENSG00000180269|ENST00000570682|GPR139;REV__GPR139|p.R244P|1|0.31|ENSG00000180269|chr16:20032066-20032066|C/G|missense_variant 11.114462752807354 0.5120171699125776 2 P{M(Oxidation (M))|F} 2 -1 17.474 0 0 1.6414 0 0 802.4443502070307 0 802.4443502070307 0 -0.4845500650402812 -0.4845500650402812 0 0 0 0 0 0 P{M(Oxidation (M))|F} 1.6414 - 16 + NaN NaN 114554.9 NaN 12434 3457 15890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15895 68.821 NaN 576230 35 0 76366 0.327 + 7170 FSIEEIHKY 9 73 583.2987277370596 1164.5829025409191 2 584.2897338867188 MULTI HCD FTMS 0 0 0 15894 13109.3125 0.37826503114727567 -3 0.07527923583984375 1 Unmodified _FSIEEIHKY_ tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1 11.640296217721598 0.25978676193971967 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK 8 4 55.532 0 0 4.7684 0 0 0 160.076057256199 160.076057256199 5.387254899964361 0 0 0 0 0 2 0.9436726795685342 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK 4.7684 - 1194 NaN NaN 174021.9 NaN 12435 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15896 68.825 NaN 953790 35 0 133060 0.261 + 13156 KYLPEWTAW 9 106 597.3039627454414 1192.5933725576826 2 597.3031005859375 MULTI HCD FTMS 0 0 0 15894 523470.6875 0.9468534071052123 -3 0.07527923583984375 2 Unmodified _KYLPEWTAW_ ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1 63.960520009940105 0.0120409805053046 2 [Y{I|L}]K[EP]WTAW 9 2 + 68.398 0 0 5.7353 5.7353 85.262 0 0 0 4.09765299137284 16.478174818886373 4.09765299137284 4.09765299137284 0 2.2059771852360797 1.0457574905606752 0.3807196863200844 0.2742275032520141 [Y{I|L}]K[EP]WTAW;[YK]{I|L}[EP]WTAW;[Y{I|L}]K[EP]GETA[VS];[Y{I|L}]K[EP]GETEK;[YK]{I|L}[EP]GETA[VS];{[CT]|[{M(Oxidation (M))|F}G]}ATHKE{I|L}YK;[YK]{I|L}[EP]GETEK;{[CT]|[{M(Oxidation (M))|F}G]}ATHK[Y{I|L}]EK;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}THKE{I|L}YK;{[CT]|[{M(Oxidation (M))|F}G]}ATHK[Y{I|L}]A[VS] 5.7353;5.3917;4.3475;4.2288;4.0039;3.9885;3.8852;3.0879;3.0215;2.3681 -;+;-;-;-;-;-;-;-;- + 1806 NaN NaN 237781 NaN 12436 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15897 68.829 NaN 381980 35 0 67425 0.261 + 7579 FYGTFDVHL 9 82 549.7664445371348 1097.5183361410695 2 549.7664794921875 MULTI HCD FTMS 0 0 0 15894 179519.84375 0.5639467392334059 4 -0.0944366455078125 3 Unmodified _FYGTFDVHL_ ENSG00000090054|ENST00000262554|SPTLC1 104.79918948944588 0.003791450360204016 2 {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}] 9 0 + 56.169 0 0 5.1178 5.1178 87.813 0 0 0 35.27819381628923 2.632192780232785 2.632192780232785 9.2478773067036 0 1.8098943791441968 0 0.4247425010840047 0 + + {M(Oxidation (M))|F}YGT{M(Oxidation (M))|F}DV[H{I|L}];{M(Oxidation (M))|F}YSA{M(Oxidation (M))|F}DV[H{I|L}];[HV][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}TGYE;[Y{M(Oxidation (M))|F}]GT{M(Oxidation (M))|F}DV[H{I|L}];[HV][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}ASYE;{M(Oxidation (M))|F}YGT[PA][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{M(Oxidation (M))|F}YSA[PA][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YN]A{I|L}[PA]T[WY];{M(Oxidation (M))|F}YS{I|L}{I|L}[HD]{[CT]|[{M(Oxidation (M))|F}G]} 5.1178;4.2752;3.2729;2.8571;2.4302;2.2479;1.4053;0.69271;0.53335 +;-;-;+;-;-;-;-;- + 456 + NaN NaN 155437.6 NaN 12437 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15898 68.832 NaN 417700 35 0 93510 0.261 + 24622 RYLPTGSFPF 10 62 592.8085510866069 1183.6025492400138 2 592.80859375 MULTI HCD FTMS 0 0 0 15894 208644.515625 0.032642684568803676 34 -0.9117202758789062 4 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 34.93206674587334 0.18938571726943593 2 S{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4 6 41.274 0 0 3.4872 0 0 687.3688832013687 0 687.3688832013687 0 35.3321441351563 0 0 0 0.9247425010840047 0 0.7614393726401688 0 + S{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.4872 + + 58 NaN NaN 158067.2 NaN 12438 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15899 68.836 NaN 326510 35 0 27035 0.261 + 31466 VYDVVELKF 9 66 556.3053733613015 1110.5961937894028 2 556.305419921875 MULTI HCD FTMS 0 0 0 15894 121542.859375 0.3969146178293671 4 -0.0944366455078125 5 Unmodified _VYDVVELKF_ ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7 55.50274090549119 0.023872834264864425 2 [Y{I|L}]{[CP]|[EA]}VE{I|L}K{M(Oxidation (M))|F} 9 3 + 76.859 0 0 6.9205 6.9205 88.025 0 0 0 6.1928031367991565 9.286662482156345 6.1928031367991565 6.1928031367991565 0 2.0994850021680094 1.6989700043360187 0 0 [Y{I|L}]{[CP]|[EA]}VE{I|L}K{M(Oxidation (M))|F};[YV][DV]VE{I|L}K{M(Oxidation (M))|F};[YV]{NN|[MP]|[D{I|L}]|[EV]}[DV]{I|L}K{M(Oxidation (M))|F} 6.9205;6.3629;3.7666 -;+;- + 220 NaN NaN 137321.6 NaN 12439 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15900 68.839 NaN 299370 35 0 30587 0.261 + 35937 YYTSLEKGFD 10 60 611.7876326086073 1221.5607122840145 2 612.2688598632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YYTSLEKGFD_ tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1 15.847184025352803 0.36288280428275715 2 YYTE 4 6 30.138 0 0 2.4672 0 0 0 662.321315015009 662.321315015009 -3.226825097560422 0 -3.226825097560422 0 0 0 1.2218487496163564 0.7742275032520141 0 YYTE 2.4672 - 104 NaN NaN 148800.4 NaN 12440 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15901 68.842 NaN 281440 35 0 19646 0.261 + 25720 SKHRFHLNC 9 80 571.2879567182533 1140.5613605033066 2 571.7902221679688 MULTI HCD FTMS 0 0 0 15894 124118.15625 0.7058303253476099 5 -0.13958740234375 7 Unmodified _SKHRFHLNC_ REV__ENSG00000113916|ENST00000406870|BCL6;REV__nc|ENSG00000113916|P41182-2|BCL6 15.847184025352803 0.2234401846867398 2 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 8 -1 50.993 0 0 4.4708 0 0 164.03837876888468 0 164.03837876888468 0 7.872286198199703 0 0 0 0 0 0.6747425010840047 0.6109243748081782 A{I|L}[WR]T{I|L}A{M(Oxidation (M))|F} 4.4708 - 246 + NaN NaN 140189 NaN 12441 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15902 68.845 NaN 144600 35 0 9089.5 0.262 + -1 CLMLLYTLYTL 11 43 473.91370726127394 1418.7192923840219 3 473.9136657714844 MULTI HCD FTMS 0 0 0 15894 77587.2890625 0.6722042398555683 5 -0.13958740234375 8 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LM(Oxidation (M))LLYTLYTL_ REV__ENST00000357258.8_2_3:114050578-114050665:-|nuORF 2.4347853303010236 0.4082425251555256 2 T{I|L} 2 -1 27.959 0 0 1.9707 0 0 1186.5781003820493 0 1186.5781003820493 0 17.501225267834002 0 0 0 0.5 0 0.5 0 T{I|L} 1.9707 + + 8 NaN NaN 118223.2 NaN 12442 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15903 68.849 NaN 255230 35 0 57201 0.261 + 14793 LILIFWFSNLF 11 50 471.6052688214974 NaN 0 471.60516357421875 PEAK HCD FTMS 0 0 0 15894 36520.08984375 0.5761790196392136 -1 0.0128936767578125 9 Unmodified _LILIFWFSNLF_ REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF 0.5059551277355931 0.3406848944787997 2 {I|L} 1 -1 5.4846 0 0 0.58272 0 0 85.77284174014478 739.3119600885374 825.0848018286822 0 0 0 0 0 0 0 0 0 {I|L} 0.58272 + + 1 + NaN NaN 138429.5 NaN 12443 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15904 68.852 NaN 160400 35 0 24568 0.261 + -1 ILTWMMVL 8 49 511.773499995511 1021.532447057822 2 511.7738952636719 MULTI HCD FTMS 0 0 0 15894 57392.09765625 0.9468059137634801 4 -0.0944366455078125 10 Oxidation (M) _ILTWMM(Oxidation (M))VL_ REV__ENST00000352689.10_1_7:131130584-131130623:+|nuORF 14.581692164780916 0.48650662947107914 2 T{M(Oxidation (M))|F}V{I|L} 4 -1 31.938 0 0 3.1265 0 0 543.2748388901405 0 543.2748388901405 0 14.948500216800937 0 0 0 0.5 0 0.3494850021680094 0 T{M(Oxidation (M))|F}V{I|L} 3.1265 - 72 NaN NaN 116072.4 NaN 12444 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15905 68.855 NaN 80166 35 0 19781 0.262 + 33328 YFVRLVEHVF 10 41 436.9079477224433 1307.70201376753 3 436.9078674316406 MULTI HCD FTMS 0 0 0 15894 21500.66015625 1 0 0 11 Unmodified _YFVRLVEHVF_ REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 1.7422754331352037 0.46608156381052757 2 E{M(Oxidation (M))|F} 2 -1 23.583 0 0 1.8034 0 0 1013.5814520993644 0 1013.5814520993644 0 23.58349385648225 0 0 0 0.5 0 0 0 E{M(Oxidation (M))|F} 1.8034 - 4 + NaN NaN 99557.6 NaN 12445 3458 15894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15907 68.86 NaN 2299100 35 0 487330 0.327 + 9025 HPELEHIIWTL 11 75 463.2504284833442 1386.7294560502326 3 463.25048828125 MULTI HCD FTMS 0 0 0 15906 865254.4375 0.9523767953111713 6 -0.152618408203125 1 Unmodified _HPELEHIIWTL_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 25.997395711884035 0.23056625056501562 2 [{I|L}T]G{M(Oxidation (M))|F}H{[WN]|[YH]}{I|L}[VS]T{I|L} 12 8 + 53.338 0 0 3.8463 3.8463 89.599 0 0 0 0.8590178777932067 35.37909996297415 0.8590178777932067 38.777587793350534 0 0.9247425010840047 1.3010299956639813 0.4247425010840047 0 [{I|L}T]G{M(Oxidation (M))|F}H{[WN]|[YH]}{I|L}[VS]T{I|L};[{I|L}T]G{M(Oxidation (M))|F}H{[WN]|[YH]}{I|L}[{I|L}T][VS] 3.8463;1.05 -;- 583 NaN NaN 432036.5 NaN 12446 3459 15906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15908 68.865 NaN 337740 35 0 59837 0.261 + 35121 YVEHYPLACL 10 87 604.2932254636607 1206.5718979941214 2 604.2930908203125 MULTI HCD FTMS 0 0 0 15906 92458.4453125 0.8703261454050836 -6 0.16717529296875 2 Unmodified _YVEHYPLACL_ REV__ENSG00000011028|ENST00000303375|MRC2 26.88365393820708 0.25965138844209146 2 [YV][VG][{M(Oxidation (M))|F}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 10 -1 + 41.619 0 0 3.4494 3.4494 80.597 0 0 0 0.38602963213035935 4.003924710485904 0.38602963213035935 0.38602963213035935 0 0.9947026752325154 1.154901959985743 0 0 [YV][VG][{M(Oxidation (M))|F}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}[{M(Oxidation (M))|F}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;[YV][VG]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;[YV]R[{M(Oxidation (M))|F}T][HQ]A{[DA]|[EG]};{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}[{M(Oxidation (M))|F}T]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;[YV]NW[EP]{I|L}TW;[YG]VV[{M(Oxidation (M))|F}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}[{M(Oxidation (M))|F}T][HK]EK 3.4494;3.4174;2.749;2.717;2.7041;2.6578;2.4896;2.319;2.1641;2.0928 -;-;-;-;-;-;-;-;-;- 1987 NaN NaN 139275 NaN 12447 3459 15906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15910 68.87 NaN 549750 35 0 30290 0.327 + 2925 DYSPYFKTI 9 95 567.279159143842 1132.5437653544839 2 567.2794189453125 MULTI HCD FTMS 0 0 0 15909 160294.15625 0.45039598113002444 -5 0.12429046630859375 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 61.08992128646608 0.016056751534446034 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 + 61.643 0 0 5.4429 5.4429 90.281 0 0 0 18.01364583357047 14.973024840566467 14.973024840566467 18.01364583357047 0 2.2376954943324545 2 0.6747425010840047 0 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}DPY{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}SPY[{I|L}T]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S{[MS]|[{M(Oxidation (M))|F}A]}KKK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DPY[{I|L}T]K{M(Oxidation (M))|F};[MT]DVVQDVN{I|L} 5.4429;3.8524;3.6473;3.2711;2.0568;0.51227 +;-;-;-;-;- + 579 NaN NaN 170303.3 NaN 12448 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15911 68.874 NaN 1381800 35 0 275340 0.261 + 29021 TYELRYFQI 9 99 616.819007517259 1231.623462101318 2 616.819091796875 MULTI HCD FTMS 0 0 0 15909 167271.09375 0.23850135770897182 13 -0.3367156982421875 2 Unmodified _TYELRYFQI_ ENSG00000163584|ENST00000295830|RPL22L1 80.6760300276096 0.005633624786464751 2 [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L} 9 0 + 90.904 0 0 7.3809 7.3809 87.452 0 0 0 24.692489407922253 16.478174818886373 16.478174818886373 2.498774732165998 0 2.2104093769761874 2 0.9749073637206093 0 + + [YT]E{I|L}RY{M(Oxidation (M))|F}Q{I|L};[YT]E{I|L}RY{M(Oxidation (M))|F}GA{I|L};[YT]KN[VG]Y{M(Oxidation (M))|F}Q{I|L};[YT]KN[VG]Y{M(Oxidation (M))|F}GA{I|L};[YT]E{I|L}RYQ{M(Oxidation (M))|F}{I|L};[YT]KGG[VG]Y{M(Oxidation (M))|F}Q{I|L};[YT]KGG[VG]Y{M(Oxidation (M))|F}GA{I|L};[YT]E{I|L}RY[AG]{M(Oxidation (M))|F}{I|L};[YT]{[NV]|[RG]}[KG]Y{M(Oxidation (M))|F}Q{I|L};[YT]KN[VG]YQ{M(Oxidation (M))|F}{I|L} 7.3809;7.178;6.3656;6.1663;6.0879;5.6215;5.4251;5.3402;5.1289;5.0727 +;-;-;-;-;-;-;-;-;- + 2222 NaN NaN 307922.9 NaN 12449 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15912 68.878 NaN 339470 35 0 17538 0.261 + 27219 SYNNFFRMF 9 85 621.2737767427004 1240.5330005522007 2 621.2738647460938 MULTI HCD FTMS 0 0 0 15909 107513.25 0.019470863451726043 96 -2.467864990234375 3 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 82.5293158979368 0.005033931517079822 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 2 63.25 0 0 5.0987 0 0 63.9989348285447 0 63.9989348285447 0 45.291681396006 0 0 0 1.8851518780601921 0 0 0.3252574989159953 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0987 - 498 + NaN NaN 141391.9 NaN 12450 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15913 68.881 NaN 272700 35 0 15455 0.261 + 32257 VYTVVDEMF 9 73 559.7575340496687 1117.5005151661373 2 559.7574462890625 MULTI HCD FTMS 0 0 0 15909 102074.9375 0.30333206728210993 13 -0.3367156982421875 4 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 81.61307344734483 0.005330412723537057 2 [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 56.067 0 0 5.0172 5.0172 89.619 0 0 0 3.1234684152074976 39.48970004336019 3.1234684152074976 17.945312593723976 0 1.8494850021680094 0 1.25 0 + + [YV]TV[DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PVV{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][{I|L}T][DV]E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0172;3.4113;3.2971 +;-;- + 149 NaN NaN 124534 NaN 12451 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15914 68.884 NaN 273530 35 0 39672 0.261 + 18680 MYLKQILYL 9 65 600.83845813544 1199.6623633376798 2 600.8386840820312 MULTI HCD FTMS 0 0 0 15909 66486.8203125 0.34197584204335063 -5 0.12429046630859375 5 Oxidation (M) _M(Oxidation (M))YLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 57.47134341890925 0.0211188941628804 2 [Y{M(Oxidation (M))|F}]{I|L}[KQ]{I|L}{I|L}Y{I|L} 9 0 + 56.705 0 0 4.7267 4.7267 82.125 0 0 0 0.4845500650402812 16.478174818886373 0.4845500650402812 0.4845500650402812 0 2.0356668758921828 0 0 0.3494850021680094 + + [Y{M(Oxidation (M))|F}]{I|L}[KQ]{I|L}{I|L}Y{I|L};[Y{I|L}]{M(Oxidation (M))|F}[KQ]{I|L}{I|L}Y{I|L};[Y{M(Oxidation (M))|F}]{I|L}[KQ]{I|L}Y{I|L}{I|L};[Y{I|L}]{M(Oxidation (M))|F}[KQ]{I|L}Y{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[KA][VS]{I|L}{I|L}Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E[KQ]{I|L}{I|L}Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[KA][VS]{I|L}Y{I|L}{I|L} 4.7267;4.6863;3.8081;3.7677;2.8119;2.6746;1.8933 +;-;-;-;-;-;- + 143 NaN NaN 148678.2 NaN 12452 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15915 68.888 NaN 781630 35 0 117410 0.261 + -1 LYIMIKKE 8 71 527.305851764673 NaN 0 527.3076171875 PEAK HCD FTMS 0 0 0 15909 79998.203125 0.5901114690279032 1 -0.029205322265625 6 Oxidation (M) _LYIM(Oxidation (M))IKKE_ REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF 21.74664581756881 0.38360090182421286 2 Y{I|L}KDAA{I|L} 7 -1 43.25 0 0 4.1089 0 0 113.09122323108927 162.0559023492797 275.147125580369 0 0 0 0 0 2.7302046884880937 0 0.3252574989159953 0 Y{I|L}KDAA{I|L} 4.1089 - 284 + NaN NaN 208473.3 NaN 12453 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15916 68.891 NaN 321100 35 0 17006 0.261 + 16218 LPVVDFNEM 9 70 540.2576094950099 1078.5006660568197 2 540.2579345703125 MULTI HCD FTMS 0 0 0 15909 51941.26171875 0.38555256270081584 5 -0.14304351806640625 7 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 110.6747026088012 0.0028322563155251486 2 VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6 3 75.438 0 0 6.9947 0 0 309.20494863898375 0 309.20494863898375 0 64.98055982231925 0 0 0 2.473197507588033 0 0.3054621874040891 0.3494850021680094 + VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6.9947 + + 191 NaN NaN 140325.2 NaN 12454 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15917 68.894 NaN 177420 35 0 35847 0.261 + -1 YYCYLRHPQLL 11 49 509.2595456623595 1524.7568075872787 3 509.259765625 MULTI HCD FTMS 0 0 0 15909 19645.48828125 0.11734720686653748 7 -0.1951141357421875 8 Carbamidomethyl (C) _YYC(Carbamidomethyl (C))YLRHPQLL_ REV__ENSG00000178202|ENST00000323468|POGLUT3;REV__nc|ENSG00000178202|Q7Z4H8-2|POGLUT3 1.214830529360525 0.41359283248740725 2 {I|L}{I|L} 2 -1 19.464 0 0 1.2765 0 0 1280.5749160029816 0 1280.5749160029816 0 7.474250108400469 0 0 0 0 0 0 0 {I|L}{I|L} 1.2765 + + 11 NaN NaN 117404.5 NaN 12455 3460 15909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15919 68.899 NaN 982920 35 0 138220 0.327 + -1 LYIMIKKE 8 78 527.305851764673 NaN 0 527.3035278320312 PEAK HCD FTMS 0 0 0 15918 112844.21875 0.8324020427536142 2 -0.061370849609375 1 Oxidation (M) _LYIM(Oxidation (M))IKKE_ REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF 28.486842064014134 0.3795038552627567 2 Y{I|L}KA{I|L}EG 7 -1 43.18 0 0 4.1022 0 0 113.09213210344167 162.05605493717033 275.148187040612 0 0 0 0 0 2.1861818737241734 0 0.6989700043360187 0.3252574989159953 Y{I|L}KA{I|L}EG 4.1022 - 344 + NaN NaN 254587.9 NaN 12456 3461 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15920 68.904 NaN 259430 35 0 22464 0.261 + 8214 GREHWTRSQ 9 66 578.781980643606 1155.5494083540118 2 579.786865234375 MULTI HCD FTMS 0 0 0 15918 21057.494140625 0.06624172224003724 12 -0.3075103759765625 2 Unmodified _GREHWTRSQ_ ENST00000291232.4_2_22:42319167-42319323:-|nuORF 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))G]|[NC]} 4 8 12.307 0 0 1.065 0 0 672.3622303693375 0 672.3622303693375 0 1.3650063603186862 0 0 0 0 0 0 0 {M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))G]|[NC]} 1.065 - 51 NaN NaN 131037.3 NaN 12457 3461 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15921 68.907 NaN 79483 35 0 8056.8 0.262 + 17930 MIPLCVPLP 9 32 491.7764784770684 981.5384040209368 2 491.7767639160156 MULTI HCD FTMS 0 0 0 15918 8195.3798828125 0.15880191750603412 7 -0.19857025146484375 3 Unmodified _MIPLCVPLP_ REV__ENSG00000069764|ENST00000438167|PLA2G10 2.302733041254933 0.33356062215410776 2 {I|L}P 2 -1 19.464 0 0 1.983 0 0 753.3948841779312 0 753.3948841779312 0 12.474250108400469 0 0 0 0 0 0 0 {I|L}P 1.983 + + 4 NaN NaN 102701.5 NaN 12458 3461 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15922 68.91 NaN 66777 35 0 3153.7 0.261 + 17083 LYLCYTDVMK 10 47 624.8028341245746 1247.591115315949 2 624.6317138671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LYLCYTDVMK_ ENSG00000183527|ENST00000331573|PSMG1;ENST00000411828.5_1_21:40547518-40555177:-|nuORF;nc|ENSG00000183527|O95456-2|PSMG1 3.2813086475875832 0.45793521633868084 2 E 1 10 6.9897 0 0 0.56026 0 0 404.4301178567678 711.1089571588499 1115.5390750156178 0 0 0 0 0 0 0 0 0 E 0.56026 - 5 + NaN NaN 111916.5 NaN 12459 3461 15918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15924 68.915 NaN 1054000 35 0 129700 0.327 + 9884 IANLEPVSL 9 69 478.2766288742486 954.5387048152973 2 478.2765808105469 MULTI HCD FTMS 0 0 0 15923 518179.65625 0.6344478567183696 3 -0.09761810302734375 1 Unmodified _IANLEPVSL_ ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2 69.10491478415734 0.009377850133389008 2 V{I|L}T{I|L} 4 7 48.928 0 0 5.1258 0 0 510.2425518403579 0 510.2425518403579 0 -1.4266750356873104 -1.4266750356873104 0 0 1.4247425010840047 0 0.4247425010840047 0 V{I|L}T{I|L} 5.1258 - 263 NaN NaN 243418.2 NaN 12460 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15925 68.92 NaN 479290 35 0 47183 0.261 + 11966 KFNPVSFTW 9 80 563.2902527931236 1124.5659526530471 2 563.2901611328125 MULTI HCD FTMS 0 0 0 15923 172083.125 0.08991775976749722 15 -0.39475250244140625 2 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 79.59630418116434 0.005983006570063981 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[VP]S{M(Oxidation (M))|F}TW 9 0 + 72.157 0 0 6.4165 6.4165 89.212 0 0 0 4.762036441594191 46.34520906668313 4.762036441594191 9.208187539523749 0 2.6989700043360187 0 0.3807196863200844 0.4247425010840047 + + {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[VP]S{M(Oxidation (M))|F}TW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GG[VP]S{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}[KG][VP]S{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}S[VP][KG]W;[{M(Oxidation (M))|F}T]G{M(Oxidation (M))|F}S[VP][KG]W;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N[VP]S{[WT]|[RM]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]SW[{I|L}T][KG]W;{[CT]|[{M(Oxidation (M))|F}G]}[KG]A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KGG{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WS[{I|L}T][KG]W;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}NA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KGG{M(Oxidation (M))|F} 6.4165;5.5976;5.5773;5.4082;5.1014;3.1675;2.066;2.0168;1.9956;1.9629 +;-;-;-;-;-;-;-;-;- + 1047 NaN NaN 165034.8 NaN 12461 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15926 68.923 NaN 1465800 35 0 258240 0.261 + -1 RLHNCRDLF 9 100 615.8114437994709 1229.6083346657417 2 616.3130493164062 MULTI HCD FTMS 0 0 0 15923 126105.15625 0.6018673052594716 4 -0.11370086669921875 3 Carbamidomethyl (C) _RLHNC(Carbamidomethyl (C))RDLF_ REV__ENSG00000150712|ENST00000382142|MTMR12;REV__nc|ENSG00000150712|Q9C0I1-2|MTMR12;REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12 20.453626601364224 0.18364154288633264 2 [YN]AWV[VS]N{I|L} 9 -1 33.099 0 0 2.6918 0 0 0 180.06737785712122 180.06737785712122 3.6917994364781848 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0.841129063296272 [YN]AWV[VS]N{I|L} 2.6918 - 2270 NaN NaN 313405.4 NaN 12462 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15927 68.932 NaN 346370 35 0 29530 0.261 + 22870 QYNTYPIKLF 10 62 643.8427181647822 1285.6708833963644 2 643.842529296875 MULTI HCD FTMS 0 0 0 15923 113677.9296875 0.6949548203128821 1 -0.0451507568359375 4 Unmodified _QYNTYPIKLF_ ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 70.33199760932243 0.017191949488996158 2 C(Carbamidomethyl (C))[TP][{I|L}P]K{I|L}{M(Oxidation (M))|F} 8 4 31.24 0 0 2.4299 0 0 311.14769179511876 0 311.14769179511876 0 19.21327198560853 0 0 0 1.4247425010840047 0 1.610924374808178 0.3054621874040891 C(Carbamidomethyl (C))[TP][{I|L}P]K{I|L}{M(Oxidation (M))|F} 2.4299 - 155 NaN NaN 137610.9 NaN 12463 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15928 68.936 NaN 873630 35 0 112990 0.262 + -1 LYIMIKKE 8 77 527.305851764673 NaN 0 527.2901000976562 PEAK HCD FTMS 0 0 0 15923 123677.1640625 0.9123119035072311 3 -0.09761810302734375 5 Oxidation (M) _LYIM(Oxidation (M))IKKE_ REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF 21.74664581756881 0.38360090182421286 2 {I|L}A{[TV]|[{I|L}S]}N{I|L} 6 -1 34.174 0 0 3.2466 0 0 165.07544930225987 273.12409387760005 438.1995431798599 0 0 0 0 0 2.1307196863200843 0 0.6747425010840047 0 {I|L}A{[TV]|[{I|L}S]}N{I|L} 3.2466 - 299 + NaN NaN 223816.6 NaN 12464 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15929 68.939 NaN 122990 35 0 15018 0.261 + -1 IARLCMTL 8 49 489.26773786255757 976.5209227919152 2 489.2673645019531 MULTI HCD FTMS 0 0 0 15923 98205.2734375 0.6235358141810668 -3 0.05500030517578125 6 Carbamidomethyl (C) _IARLC(Carbamidomethyl (C))MTL_ REV__ENSG00000133704|ENST00000256079|IPO8;REV__IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;REV__IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;REV__IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant 13.90604991867851 0.4914777452512057 2 {I|L}A{[QV]|[N{I|L}]|[RA]|[KV]}E 5 -1 31.198 0 0 3.1948 0 0 0 433.2075289361938 433.2075289361938 19.20818753952375 0 0 0 0 0.7742275032520141 0 0.4247425010840047 0 {I|L}A{[QV]|[N{I|L}]|[RA]|[KV]}E 3.1948 - 37 + NaN NaN 111388.3 NaN 12465 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15930 68.942 NaN 307030 35 0 71051 0.261 + -1 LYLILSMQL 9 49 555.3159432737202 1108.6173336142404 2 555.3155517578125 MULTI HCD FTMS 0 0 0 15923 100624.6171875 0.7380725757318063 -3 0.05500030517578125 7 Oxidation (M) _LYLILSM(Oxidation (M))QL_ REV__ENST00000513079.5_1_5:73985169-73989478:+|nuORF 20.453626601364224 0.18364154288633264 2 Q{M(Oxidation (M))|F}D 3 -1 16.995 0 0 1.533 0 0 131.2377485419027 584.2016695611936 715.4394181030964 0 0 0 0 0 0 0 0.3807196863200844 0 Q{M(Oxidation (M))|F}D 1.533 - 33 + NaN NaN 142832.4 NaN 12466 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15931 68.946 NaN 219820 35 0 16379 0.261 -1 IPDEIIDMV 9 60 530.7649077259115 1059.5152625186229 2 530.7645263671875 MULTI HCD FTMS 0 0 0 15923 68204.7109375 0.4295606321804581 8 -0.22663116455078125 8 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 25.399314129420986 0.14091189997036632 2 E{I|L}D{M(Oxidation (M))|F}V 5 -1 50.573 0 0 4.7732 0 0 438.2570057599625 0 438.2570057599625 0 36.59379381312206 0 0 0 1.5 0 0 0 E{I|L}D{M(Oxidation (M))|F}V 4.7732 - 74 NaN NaN 114020.2 NaN 12467 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15932 68.949 NaN 288960 35 0 12815 0.261 + 6361 FPFYYEIKM 9 66 627.298453891388 1252.582354849576 2 627.2992553710938 MULTI HCD FTMS 0 0 0 15923 80561.0546875 0.08525045863453168 38 -1.0293731689453125 9 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 55.50274090549119 0.023872834264864425 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F} 9 0 + 64.725 0 0 5.1674 5.1674 83.387 0 0 0 1.9112251007275916 1.783343794609138 1.783343794609138 1.783343794609138 0 2.4247425010840047 2 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YKYY{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YP{[HG]|PP}Y{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY{M(Oxidation (M))|F}[K{I|L}]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YY[YK]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[K{I|L}]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}Y[YK]PE;[Y{M(Oxidation (M))|F}]PKYY{M(Oxidation (M))|F}PE 5.1674;5.025;5.0148;4.9088;4.8296;3.8573;3.839;3.5987;3.5805;3.4033 +;-;+;-;-;-;-;-;-;- + 561 NaN NaN 137215.8 NaN 12468 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15933 68.952 NaN 166610 35 0 22693 0.262 + -1 LNLPHCFF 8 52 524.2590102761714 1046.5034676191426 2 524.7584228515625 MULTI HCD FTMS 0 0 0 15923 58343.7109375 0.49140976593995045 8 -0.22663116455078125 10 Carbamidomethyl (C) _LNLPHC(Carbamidomethyl (C))FF_ REV__ENSG00000124134|ENST00000537075|KCNS1 5.760428011301431 0.5334459684533844 2 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8 -1 + 25.406 0 0 2.4277 2.4277 87.827 0 0 0 18.416375079047498 16.40978057358332 16.40978057358332 25.406075122407685 0 0 0 0 0 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 2.4277 - 22 + NaN NaN 104475.3 NaN 12469 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15934 68.956 NaN 141280 35 0 19013 0.261 + 18681 MYMGVPIVL 9 59 511.773499995511 1021.532447057822 2 511.7734069824219 MULTI HCD FTMS 0 0 0 15923 43966.9140625 0.725328676669695 8 -0.22663116455078125 11 Unmodified _MYMGVPIVL_ tr|U7SUG2|U7SUG2_FUSNUAcylcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01144PE=4SV=1 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}V{I|L} 3 6 31.198 0 0 3.054 0 0 644.316549681253 0 644.316549681253 0 16.593793813122062 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}V{I|L} 3.054 - 53 NaN NaN 116432.8 NaN 12470 3462 15923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15936 68.961 NaN 277300 35 0 34349 0.327 -1 KYMDINFDF 9 70 604.7683943763944 1207.5222358195888 2 604.7682495117188 MULTI HCD FTMS 0 0 0 15935 85112.859375 0.6021559994424177 -2 0.061370849609375 1 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 38.61474834105838 0.07170385841135779 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 44.483 0 0 3.6838 0 0 666.3043508543294 0 666.3043508543294 0 29.878428407800328 0 0 0 1.305462187404089 0 0 0.25 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.6838 + + 204 NaN NaN 133466.2 NaN 12471 3463 15935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15937 68.965 NaN 198180 35 0 6864.2 0.261 -1 QYVYWLHML 9 57 634.8101208564551 1267.6056887797101 2 634.8106079101562 MULTI HCD FTMS 0 0 0 15935 36047.70703125 0.08196813818876696 28 -0.749237060546875 2 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 14.581692164780916 0.23437375358055648 2 {I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 6 -1 22.396 0 0 1.7668 0 0 415.1892262189469 0 415.1892262189469 0 10.406075122407685 0 0 0 0 0 0 0 {I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.7668 - 43 NaN NaN 123074.2 NaN 12472 3463 15935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15938 68.969 NaN 57614 35 0 8539.9 0.264 -1 0 42 404.1491924216324 403.1419159550324 1 404.71319580078125 MULTI HCD FTMS 0 0 0 15935 6105.0673828125 0.920273017556775 2 -0.05246734619140625 3 NaN NaN 2 S 1 -1 2.7642 0 0 0.68567 0 0 181.04120597143708 132.04487024478752 313.08607621622457 0 0 0 0 0 0 0 0 0 S 0.68567 - 2 + NaN NaN 97118 NaN 12473 3463 15935 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15940 68.973 NaN 6854100 35 0 694940 0.327 + 19813 NYAWVYYHL 9 106 614.7931119449629 1227.5716709567257 2 614.7931518554688 MULTI HCD FTMS 0 0 0 15939 4077165 0.06418204218521045 -6 0.1525421142578125 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 122.25 0 0 9.9585 9.9585 96.401 0 0 0 30.911290632962718 16.478174818886373 16.478174818886373 15.537275116073346 0 2.774227503252014 1.6989700043360187 0 2.591129063296272 + + [YN]AWVYYH{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYADAV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]W{I|L}GYYH{I|L};NYAWV{M(Oxidation (M))|F}V[SG]W;NYAWVY{[QV]|[N{I|L}]|[RA]|[KV]}W;[YN]AVWW[YN]{I|L} 9.9585;8.6928;8.6071;7.4404;7.2459;7.1972;7.036;6.8205;6.6652;5.9802 +;-;-;+;-;-;-;-;-;- + 7300 NaN NaN 850027.2 NaN 12474 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15941 68.978 NaN 536400 35 0 95101 0.261 + 12775 KYDTDFYIL 9 66 589.2929245667173 1176.5712962002344 2 589.29248046875 MULTI HCD FTMS 0 0 0 15939 294614.4375 0.44615808059206186 -1 0.0129547119140625 2 Unmodified _KYDTDFYIL_ ENSG00000115866|ENST00000264161|DARS1;ENST00000489964.5_1_2:136664888-136672125:-|nuORF;nc|ENSG00000115866|P14868-2|DARS1 26.268140514670165 0.13340543277302316 2 D{M(Oxidation (M))|F}Y{I|L}{I|L} 5 4 51.035 0 0 4.3376 0 0 507.23051650215 0 507.23051650215 0 23.142769315559484 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + D{M(Oxidation (M))|F}Y{I|L}{I|L} 4.3376 + + 158 NaN NaN 181616.7 NaN 12475 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15942 68.981 NaN 1007100 35 0 116580 0.261 + 13157 KYLPEWTAW 9 99 597.3039627454414 1192.5933725576826 2 597.3031616210938 MULTI HCD FTMS 0 0 0 15939 253422.078125 0.45838967460492147 3 -0.091583251953125 3 Unmodified _KYLPEWTAW_ ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1 53.40400417844725 0.026808823219830042 2 [YK]{I|L}PEWTAW 9 0 + 65.939 0 0 5.529 5.529 89.895 0 0 0 6.395067726032551 38.78408088201809 6.395067726032551 14.986512420283233 0 2.5114393726401687 0 0 0.2742275032520141 + + [YK]{I|L}PEWTAW;[YK]{I|L}PEGETEK;[YK]{I|L}PEGETA[VS];{[CT]|[{M(Oxidation (M))|F}G]}ATHKE{I|L}YK;{[CT]|[{M(Oxidation (M))|F}G]}A{I|L}{I|L}EWTAW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}EWTAW;{[CT]|[{M(Oxidation (M))|F}G]}A{I|L}{I|L}EGETEK;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}THKE{I|L}YK;{[CT]|[{M(Oxidation (M))|F}G]}ATHK[Y{I|L}]EK;[YK]{I|L}{[CA]|SS}[HT]TEK 5.529;4.2724;4.1088;4.0592;3.5992;3.4707;3.1847;3.0922;3.0773;2.4399 +;-;-;-;-;-;-;-;-;- + 1342 NaN NaN 238233.9 NaN 12476 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15943 68.985 NaN 654900 35 0 80475 0.261 + 1127 AYLCVQVQIE 10 85 583.2987277370596 1164.5829025409191 2 584.2897338867188 MULTI HCD FTMS 0 0 0 15939 19525.740234375 0.5634090069886939 3 -0.091583251953125 4 Unmodified _AYLCVQVQIE_ REV__ENSG00000105486|ENST00000263274|LIG1;REV__nc|ENSG00000105486|P18858-2|LIG1;REV__nc|ENSG00000105486|P18858-3|LIG1 16.942295170755138 0.35263950412107176 2 S{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 8 -1 55.598 0 0 4.7741 0 0 145.09329180048786 0 145.09329180048786 0 17.941453415473205 0 0 0 0 0 0.7742275032520141 0 S{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 4.7741 - 1852 + NaN NaN 192807.1 NaN 12477 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15944 68.988 NaN 1880800 35 0 124420 0.261 + -1 TPSWHSTPAVC 11 133 621.7823961721873 1241.5502394111745 2 621.7819213867188 MULTI HCD FTMS 0 0 0 15939 435550 0.08026966035364355 -6 0.1525421142578125 5 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 84.992 0 0 6.8456 6.8456 91.061 0 0 0 7.272825289001176 41.39436723352722 7.272825289001176 10.571720435366657 0 2.274227503252014 1.5228787452803376 1.0501648626366045 1.2416440611282624 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};NYAW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCVG{[QN]|[E{I|L}]|[KN]}NY;[YN]AWVYP[SG]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}{[DA]|[EG]};[YN]AW[{M(Oxidation (M))|F}E]{[QV]|[N{I|L}]|[RA]|[KV]}W;[YN]APCVR{[DA]|[EG]}AY;[YN]APCVG{[QN]|[E{I|L}]|[KN]}GGY 6.8456;5.9941;5.4323;5.1873;4.9813;4.8766;4.8306;4.7752;4.7492;4.697 -;-;-;-;-;-;-;-;-;- 31953 NaN NaN 393123.8 NaN 12478 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15945 68.991 NaN 428660 35 0 95571 0.264 + 29572 VADPVEAVL 9 58 456.7555727363678 911.4965925395356 2 456.7554626464844 MULTI HCD FTMS 0 0 0 15939 86276.1328125 0.09248950243860474 -6 0.1525421142578125 6 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 61.357469665136826 0.01568246967499496 2 {[VA]|[{I|L}G]}D[VP]EAV{I|L} 9 0 + 75.697 0 0 8.3046 8.3046 97.642 0 0 0 18.741436528314566 58.706831207219494 18.741436528314566 75.69653125057968 0 2.7614393726401687 1.3979400086720375 0 0 + + {[VA]|[{I|L}G]}D[VP]EAV{I|L} 8.3046 + + 122 NaN NaN 158631.5 NaN 12479 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15946 68.995 NaN 381430 35 0 30730 0.261 + 3752 ENLNFMAIGF 10 67 578.2772306821804 NaN 0 578.2763671875 PEAK HCD FTMS 0 0 0 15939 85894.09375 0.15390364167729326 17 -0.4510955810546875 7 Unmodified _ENLNFMAIGF_ ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 17.11289562659939 0.30402175129113823 2 {I|L}G 2 8 21.454 0 0 1.8582 0 0 819.3556870950264 162.0558260553344 981.4115131503607 0 0 0 0 0 1.3494850021680094 0 0 0 + {I|L}G 1.8582 + + 34 + NaN NaN 146627.7 NaN 12480 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15947 68.998 NaN 430270 35 0 169260 0.263 -1 0 38 440.59939643404897 1318.776359902347 3 440.5991516113281 MULTI HCD FTMS 0 0 0 15939 69753.59375 0.12242298362128493 -4 0.1035308837890625 8 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.2579 0 0 1040.6112456634576 0 1040.6112456634576 0 29.776296993281406 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2579 - 13 NaN NaN 153667.2 NaN 12481 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15948 69.001 NaN 1051000 35 0 60855 0.261 + 7580 FYGTFDVHL 9 102 549.7664445371348 1097.5183361410695 2 549.7672729492188 MULTI HCD FTMS 0 0 0 15939 28944.30859375 0.09092615116990797 10 -0.25592803955078125 9 Unmodified _FYGTFDVHL_ ENSG00000090054|ENST00000262554|SPTLC1 36.04419817259434 0.08350412372117409 2 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV 8 8 56.918 0 0 5.186 0 0 0 163.01928900913586 163.01928900913586 3.0411342943241237 0 0 0 0 0 1.6989700043360187 1.1791746928241125 0 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV 5.186 - 1460 NaN NaN 247470.1 NaN 12482 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15949 69.005 NaN 172550 35 0 9050.1 0.261 -1 KYLMELTLI 9 57 570.3222579981017 1138.6299630630033 2 570.3218383789062 MULTI HCD FTMS 0 0 0 15939 27089.3828125 0.15206108438259824 11 -0.2919158935546875 10 Oxidation (M) _KYLM(Oxidation (M))ELTLI_ ENSG00000157456|ENST00000288207|CCNB2 22.736283301280096 0.1639198954644489 2 KT{I|L}{I|L} 4 -1 41.904 0 0 3.6802 0 0 665.3133412091812 0 665.3133412091812 0 28.460448799806798 0 0 0 0.8807196863200843 0 0.7134679910804405 0.3054621874040891 KT{I|L}{I|L} 3.6802 - 65 NaN NaN 130563.9 NaN 12483 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15950 69.008 NaN 326810 35 0 46996 0.261 + 3945 EQEKRREREVR 11 74 505.6099274015781 1513.8079528049343 3 505.6095275878906 MULTI HCD FTMS 0 0 0 15939 9100.33203125 0.04239932166472416 14 -0.36952972412109375 11 Unmodified _EQEKRREREVR_ REV__ENSG00000130254|ENST00000252542|SAFB2 1.214830529360525 0.41359283248740725 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 1.7155 0 0 1235.644483206948 0 1235.644483206948 0 22.870156338638594 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7155 - 16 NaN NaN 137291.9 NaN 12484 3464 15939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15952 69.013 NaN 522430 35 0 105530 0.327 + 24623 RYLPTGSFPF 10 63 592.8085510866069 1183.6025492400138 2 592.8088989257812 MULTI HCD FTMS 0 0 0 15951 185373.71875 0.029001940503330104 41 -1.0430221557617188 1 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 26.020703789607367 0.2677231329712098 2 GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 5 5 40.494 0 0 3.4213 0 0 630.3507937899843 0 630.3507937899843 0 28.4426497459757 0 0 0 1.2134679910804405 0 0.4247425010840047 0 + GS{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.4213 + + 187 NaN NaN 180013.9 NaN 12485 3465 15951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15953 69.017 NaN 211290 35 0 38943 0.261 + 10081 IFFENHPYF 9 53 607.2872616918412 1212.5599704504823 2 607.2879638671875 MULTI HCD FTMS 0 0 0 15951 165695.28125 0.06997730160136234 43 -1.0820083618164062 2 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 43.77239144664712 0.04802738721622131 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 4 5 37.027 0 0 3.0536 0 0 0 673.2703341119749 673.2703341119749 26.569269189356532 0 0 0 0 1.110924374808178 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.0536 + + 57 + NaN NaN 115172.8 NaN 12486 3465 15951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15954 69.021 NaN 1357200 35 0 100190 0.261 + 2954 DYVEGLRVF 9 102 549.2850743294578 1096.5555957257154 2 549.2844848632812 MULTI HCD FTMS 0 0 0 15951 767869.125 0.56742906389653 -5 0.14304351806640625 3 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 106.94017166704063 0.003441928997083001 2 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 110.62 0 0 10.088 10.088 97.43 0 0 0 24.047570192886937 16.478174818886373 16.478174818886373 24.047570192886937 0 3.2302046884880937 2 1.750226068323236 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};[YV]DEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VT[TP]RV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]EEG{I|L}RV{M(Oxidation (M))|F};[YN]A{[SA]|[TG]}G{I|L}[VG]V{M(Oxidation (M))|F};[YN][QT]G{I|L}[VG]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}QQG{I|L}[VG]V{M(Oxidation (M))|F};[YN]ANT{I|L}[VG]V{M(Oxidation (M))|F};[YV]DT[TP]RV{M(Oxidation (M))|F} 10.088;7.8946;7.7178;7.3589;6.9482;6.3936;6.0684;5.4757;5.3781;5.1659 +;-;-;-;-;-;-;-;-;- + 3973 NaN NaN 296755.6 NaN 12487 3465 15951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15955 69.024 NaN 194180 35 0 13259 0.261 + 32736 WQGDLLLQL 9 63 543.3023205426933 NaN 0 543.787353515625 PEAK HCD FTMS 0 0 0 15951 38104.2890625 0.305697755811289 -4 0.11383819580078125 4 Unmodified _WQGDLLLQL_ REV__ENSG00000251692|ENST00000447419|PTX4;REV__nc|ENSG00000251692|Q96A99-2|PTX4 13.042465956692817 0.23204487237355156 2 Q{I|L} 2 -1 11.836 0 0 1.0913 0 0 131.09122707456362 709.3307589166624 840.4219859912259 0 0 0 0 0 0.3252574989159953 0 0 0 Q{I|L} 1.0913 + + 6 + NaN NaN 120533.8 NaN 12488 3465 15951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15957 69.029 NaN 946440 35 0 88089 0.327 -1 0 94 427.83475019449213 1280.4824211836765 3 427.8346252441406 MULTI HCD FTMS 0 0 0 15956 114305.0234375 0.07684325475873212 -4 0.11370086669921875 1 NaN NaN 2 E{M(Oxidation (M))|F} 2 -1 19.821 0 0 1.5479 0 0 0 1001.3613703536266 1001.3613703536266 0.1548564655519833 0 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.5479 - 293 + NaN NaN 236923.2 NaN 12489 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15958 69.033 NaN 1002600 35 0 135540 0.261 + 27557 TADKLYFVL 9 78 535.2999182665454 1068.5852835998908 2 535.2999877929688 MULTI HCD FTMS 0 0 0 15956 258294.609375 0.39078043681745206 1 -0.03598785400390625 2 Unmodified _TADKLYFVL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 41.95555342248728 0.056367691549927025 2 [TA]DK[Y{I|L}]{M(Oxidation (M))|F}V{I|L} 9 0 + 42.589 0 0 3.9856 3.9856 87.199 0 0 0 8.64902171010165 13.420234257298276 8.64902171010165 12.525749891599524 0 1.5044321917401078 0 0.5994850021680094 0 + + [TA]DK[Y{I|L}]{M(Oxidation (M))|F}V{I|L};[TA]DK[Y{I|L}]V{M(Oxidation (M))|F}{I|L};[TA]DK[Y{I|L}]V{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}PR[WQ]{I|L}{I|L};[{M(Oxidation (M))|F}V]Y[{I|L}T]{[QS]|[NT]}V{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T]{[QS]|[NT]}V{I|L};[Y{M(Oxidation (M))|F}]{I|L}{[TV]|[{I|L}S]}{[QS]|[NT]}V{I|L};[{M(Oxidation (M))|F}V]Y[{I|L}T][NS]{I|L}{I|L};[Y{M(Oxidation (M))|F}]V[{I|L}T][NS]{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{[TV]|[{I|L}S]}[NS]{I|L}{I|L} 3.9856;2.8134;2.0625;1.6559;1.346;1.0255;0.95144;0.73722;0.41678;0.34268 +;-;-;-;-;-;-;-;-;- + 286 NaN NaN 243923.7 NaN 12490 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15959 69.037 NaN 316780 35 0 69899 0.262 -1 LQPCEHPEPC 10 49 422.84671891260007 1265.5183273380003 3 422.8465881347656 MULTI HCD FTMS 0 0 0 15956 75506.8515625 0.07724272737479373 -4 0.11370086669921875 3 2 Carbamidomethyl (C) _LQPC(Carbamidomethyl (C))EHPEPC(Carbamidomethyl (C))_ ENSG00000203786|ENST00000606109|KPRP 3.3196427980023873 0.4577323075863651 2 {I|L} 1 -1 21.99 0 0 1.7376 0 0 1134.4235987997174 0 1134.4235987997174 0 16.505149978319906 0 0 0 0.5 0 0 0 {I|L} 1.7376 + + 10 + NaN NaN 135477.7 NaN 12491 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15960 69.04 NaN 843240 35 0 128760 0.261 -1 FMFLTLLCLTL 11 48 463.2504284833442 1386.7294560502326 3 463.5848083496094 MULTI HCD FTMS 0 0 0 15956 169798.65625 0.22950794536471464 13 -0.3466796875 4 Carbamidomethyl (C),Oxidation (M) _FM(Oxidation (M))FLTLLC(Carbamidomethyl (C))LTL_ ABCD4|p.L41F|1|0.07|ENSG00000119688|chr14:74300184-74300184|C/G|missense_variant 9.764250979337305 0.37200617284565546 2 WT{I|L} 3 -1 39.253 0 0 2.8306 0 0 968.5086699410448 0 968.5086699410448 0 21.293709283484077 0 0 0 0.9247425010840047 0 0.3807196863200844 0 WT{I|L} 2.8306 - 31 NaN NaN 218767.1 NaN 12492 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15961 69.044 NaN 815950 35 0 67700 0.261 + 17115 LYLKALEGF 9 75 527.3026399699912 NaN 0 527.2916259765625 PEAK HCD FTMS 0 0 0 15956 76628.984375 0.667129533998746 1 -0.03598785400390625 5 Unmodified _LYLKALEGF_ ENSG00000116016|ENST00000263734|EPAS1 60.07390631473393 0.025248448234918747 2 A{I|L}WE{I|L}H 6 7 30.433 0 0 2.8912 0 0 101.07371148119485 199.1082705133422 300.18198199453707 0 0 0 0 0 0 0 0.28872548999643577 0 A{I|L}WE{I|L}H 2.8912 - 280 + NaN NaN 212205.7 NaN 12493 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15962 69.047 NaN 479930 35 0 32314 0.261 + 2926 DYSPYFKTI 9 96 567.279159143842 1132.5437653544839 2 567.27880859375 MULTI HCD FTMS 0 0 0 15956 237842.96875 0.668293341261678 1 -0.03598785400390625 6 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 65.47368725323818 0.010552856507075443 2 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 60.594 0 0 5.3503 5.3503 89.943 0 0 0 20.228787452803374 14.973024840566467 14.973024840566467 16.581531501239297 0 1.9247425010840047 2 0.5994850021680094 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[YV][TP]EK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[YV][YQ]PT{I|L} 5.3503;3.8862;3.5642;2.1001;0.55032;0.16906 +;-;-;-;-;- + 495 NaN NaN 168285.3 NaN 12494 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15963 69.05 NaN 724490 35 0 75875 0.261 + 14374 LEEQHHQAMQ 10 85 625.7837693869168 1249.5529858406335 2 625.7835693359375 MULTI HCD FTMS 0 0 0 15956 163137.09375 0.3626965615788442 -7 0.168701171875 7 Unmodified _LEEQHHQAMQ_ ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3 26.268140514670165 0.2654086933305545 2 [YN]A[PG]NVCYH{I|L} 11 11 + 75.481 0 0 6.0406 6.0406 89.972 0 0 0 19.09357224560904 52.36040778645621 19.09357224560904 11.765323173265017 0 2.2034021960761265 2 0 0.9757724967479859 [YN]A[PG]NVCYH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}[HM]YH{I|L};[YN][QP]NVCYH{I|L};[YN]AWVNH{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[YN]A{[DA]|[EG]}{[{M(Oxidation (M))|F}H]|[RQ]}YH{I|L};[YN]A[VS]{[{M(Oxidation (M))|F}H]|[RQ]}YH{I|L};[YN]AWD[VS]H{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWV{[DS]|[MA]|[CV]|TT}H{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVN[PG]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]H{[DS]|[MA]|[CV]|TT}VCYH{I|L} 6.0406;5.099;4.8539;4.7247;4.4967;4.4967;4.1093;3.8684;3.7168;3.3447 -;-;-;-;-;-;-;-;-;- 970 NaN NaN 210746.3 NaN 12495 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15964 69.054 NaN 633550 35 0 72350 0.261 + -1 NYRFLEGCES 10 95 637.777827919255 1273.5411029053098 2 637.7764282226562 MULTI HCD FTMS 0 0 0 15956 120843.46875 0.2161158651992736 -7 0.168701171875 8 Carbamidomethyl (C) _NYRFLEGC(Carbamidomethyl (C))ES_ REV__ENSG00000186230|ENST00000334181|ZNF749 22.736283301280096 0.29844449404982915 2 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}AE 10 -1 48.596 0 0 3.8158 0 0 0 159.03170696336898 159.03170696336898 12.648590849053214 0 0 0 0 1.3494850021680094 1.5228787452803376 0.6694451763165201 0.28872548999643577 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}AE 3.8158 - 1563 NaN NaN 185116.2 NaN 12496 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15965 69.057 NaN 596920 35 0 78811 0.262 + -1 LQDQCLCGCL 10 81 633.7664513236438 1265.5183497140874 2 633.76611328125 MULTI HCD FTMS 0 0 0 15956 72832.4296875 0.2731730340176145 -2 0.05559539794921875 9 3 Carbamidomethyl (C) _LQDQC(Carbamidomethyl (C))LC(Carbamidomethyl (C))GC(Carbamidomethyl (C))L_ REV__ENST00000571989.1_1_17:80551317-80551389:+|nuORF 8.155526934196011 0.43213520406898465 2 {[WT]|[RM]}DDVDWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 10 -1 {[WT]|[RM]}DDVD + + 21.242 -2.0952 -0.2865 1.6785 1.6785 59.724 0 0 0 0 3.2834093268442643 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {[WT]|[RM]}DDVDWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.6785 - 133 + NaN NaN 179003.4 NaN 12497 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15966 69.06 NaN 206710 35 0 33390 0.261 -1 MYLKQILYL 9 57 600.83845813544 1199.6623633376798 2 600.83837890625 MULTI HCD FTMS 0 0 0 15956 38035.9453125 0.1956383891577312 1 -0.03598785400390625 10 Oxidation (M) _M(Oxidation (M))YLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 15.847184025352803 0.2234401846867398 2 {I|L}Y{I|L} 3 -1 31.198 0 0 2.6006 0 0 792.4201527326187 0 792.4201527326187 0 24.20818753952375 0 0 0 0.5 0 0 0 {I|L}Y{I|L} 2.6006 + + 37 NaN NaN 120749.9 NaN 12498 3466 15956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15968 69.065 NaN 370290 35 0 33674 0.327 + 9885 IANLEPVSL 9 63 478.2766288742486 954.5387048152973 2 478.276611328125 MULTI HCD FTMS 0 0 0 15967 242743.640625 0.2972100133013383 8 -0.2003326416015625 1 Unmodified _IANLEPVSL_ ENSG00000130713|ENST00000372358|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;nc|ENSG00000130713|Q13868-3|EXOSC2 26.268140514670165 0.13340543277302316 2 V{I|L}T{I|L} 4 7 43.488 0 0 4.5559 0 0 510.2413807599625 0 510.2413807599625 0 22.220938031831565 0 0 0 1 0 0.3054621874040891 0 V{I|L}T{I|L} 4.5559 - 139 NaN NaN 140803.6 NaN 12499 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15969 69.069 NaN 605900 35 0 31513 0.261 + 18103 MPAFIFEHI 9 101 560.7781186049104 1119.5416842766208 2 560.7785034179688 MULTI HCD FTMS 0 0 0 15967 204485.15625 0.6007868822837729 -3 0.091583251953125 2 Oxidation (M) _M(Oxidation (M))PAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 71.13359017698441 0.008721403657255008 2 {M(Oxidation (M))|F}PA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L} 9 0 + 58.474 0 0 5.2231 5.2231 83.145 0 0 0 1.2031761281904991 1.2031761281904991 1.2031761281904991 1.2031761281904991 0 2.41944517631652 0 0 0 + + {M(Oxidation (M))|F}PA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{M(Oxidation (M))|F}PA[KT]{I|L}{[ES]|[DT]|[{I|L}C]}{NN|[MP]|[D{I|L}]|[EV]};{M(Oxidation (M))|F}PA[{I|L}P]YYH{I|L};[{M(Oxidation (M))|F}V]VV{[NV]|[RG]}{M(Oxidation (M))|F}APE;{M(Oxidation (M))|F}PA[W{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AQV[KG]D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}PA[KT]MVV{NN|[MP]|[D{I|L}]|[EV]};{I|L}C(Carbamidomethyl (C))[RD]{I|L}{[ES]|[DT]|[{I|L}C]}VE 5.2231;5.1156;2.9336;2.6706;2.3895;2.116;1.692;1.6347;0.75528 +;+;-;-;-;-;-;-;- + 783 + NaN NaN 179481.5 NaN 12500 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15970 69.073 NaN 818660 35 0 236290 0.261 -1 FFGESFCICD 10 76 641.2487789612193 1280.4830049892385 2 641.248291015625 MULTI HCD FTMS 0 0 0 15967 160380.265625 0.3168523359159161 -3 0.091583251953125 3 2 Carbamidomethyl (C) _FFGESFC(Carbamidomethyl (C))IC(Carbamidomethyl (C))D_ ENSG00000232113|ENST00000417563|TEX50 3.5964929083625545 0.45626689593999237 2 [YN]A 3 -1 21.171 0 0 1.6534 0 0 0 929.3172999933978 929.3172999933978 1.684531067637419 0 0 0 0 0 1.6989700043360187 0 0 [YN]A 1.6534 - 246 NaN NaN 205758.4 NaN 12501 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15971 69.076 NaN 478900 35 0 134280 0.264 + -1 YVLSCKRLHCI 11 49 464.5817957331066 NaN 0 464.5820007324219 PEAK HCD FTMS 0 0 0 15967 25507.9609375 0.41236546102569155 1 -0.03266143798828125 4 Carbamidomethyl (C) _YVLSC(Carbamidomethyl (C))KRLHCI_ REV__ENST00000549561.6_1_12:93895027-93896523:+|nuORF;REV__ENST00000549982.5_1_12:93895027-93895117:+|nuORF 2.6312355333042263 0.3346560860168035 2 V 1 -1 5.4846 0 0 0.59155 0 0 693.0130807466836 132.04580103092033 825.0588817776039 0 0 0 0 0 0 0 0 0 V 0.59155 + + 2 + NaN NaN 162387.4 NaN 12502 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15972 69.08 NaN 218380 35 0 21637 0.261 -1 FFDAELSQM 9 47 552.2391290246032 1102.4637051160064 2 552.7409057617188 MULTI HCD FTMS 0 0 0 15967 24714.716796875 0.012108781758510203 151 -4.021568298339844 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 23.789781309258295 0.1548179064208189 2 E{I|L}SQ{M(Oxidation (M))|F} 5 -1 50.93 0 0 4.6196 0 0 480.1891968983775 0 480.1891968983775 0 43.94016261540408 0 0 0 1.9247425010840047 0 0 0 E{I|L}SQ{M(Oxidation (M))|F} 4.6196 + + 145 + NaN NaN 121850.7 NaN 12503 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15973 69.083 NaN 217290 35 0 18175 0.261 + 16219 LPVVDFNEM 9 61 540.2576094950099 1078.5006660568197 2 540.258056640625 MULTI HCD FTMS 0 0 0 15967 78549.703125 0.5830632205897993 12 -0.31069183349609375 6 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 61.60191391372663 0.015340508911304802 2 VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 6 3 62.121 0 0 5.7599 0 0 309.2037433046697 0 309.2037433046697 0 51.151472245769654 0 0 0 2.805462187404089 0 0.7742275032520141 0.3494850021680094 + VD{M(Oxidation (M))|F}NE{M(Oxidation (M))|F} 5.7599 + + 96 + NaN NaN 129612.6 NaN 12504 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15974 69.086 NaN 415860 35 0 21962 0.261 + 29962 VFIDEKSDGF 10 73 578.7794164495135 1155.544279965827 2 578.7800903320312 MULTI HCD FTMS 0 0 0 15967 54458.3671875 0.25727906008360435 -7 0.1951141357421875 7 Unmodified _VFIDEKSDGF_ ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF 6.2057823575117 0.44245551207394906 2 {I|L}G{M(Oxidation (M))|F} 3 7 23.812 0 0 2.0607 0 0 820.3606079460989 0 820.3606079460989 0 7.921656121837657 0 0 0 0 0 0 0 {I|L}G{M(Oxidation (M))|F} 2.0607 - 82 + NaN NaN 159510.7 NaN 12505 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15975 69.09 NaN 288970 35 0 36035 0.261 -1 0 52 536.164315824801 535.1570393582009 1 537.2874755859375 MULTI HCD FTMS 0 0 0 15967 96344.1328125 0.7283138502868596 -6 0.1659088134765625 8 NaN NaN 2 VS{M(Oxidation (M))|F} 3 -1 15.662 0 0 2.9266 0 0 183.97782290487902 0 183.97782290487902 0 11.68243764792422 0 0 0 0 0 0 0 VS{M(Oxidation (M))|F} 2.9266 - 24 + NaN NaN 131862.1 NaN 12506 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15976 69.093 NaN 114770 35 0 7187.1 0.261 + -1 QPYIKEVM 8 47 512.2626342773438 NaN 0 512.2626342773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _QPYIKEVM(Oxidation (M))_ REV__ENSG00000104549|ENST00000265896|SQLE 5.760428011301431 0.38822285293237185 2 VE[RP]{I|L}V 6 -1 18.416 0 0 1.8011 0 0 164.0663244123063 162.02295862369377 326.0892830360001 0 0 0 0 0 0 0 0 0 VE[RP]{I|L}V 1.8011 - 30 + NaN NaN 101461.5 NaN 12507 3467 15967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15978 69.098 NaN 3254800 35 0 191660 0.327 -1 YNAPTDHGLCI 11 131 630.7878241196413 1259.5610953060825 2 630.787841796875 MULTI HCD FTMS 0 0 0 15977 2775772.25 0.7227886071513641 -2 0.0686492919921875 1 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 2 NYAWMYT 7 -1 86.834 0 0 6.894 0 0 0 327.14426599674067 327.14426599674067 50.87160086578287 0 0 0 0 2.1989700043360187 1.6989700043360187 1.055462187404089 0 NYAWMYT 6.894 - 23822 + NaN NaN 588164.2 NaN 12508 3468 15977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15979 69.102 NaN 229990 35 0 21104 0.262 + -1 EMDYLPIAL 9 59 540.7682381205993 1079.5219233079986 2 540.7685546875 MULTI HCD FTMS 0 0 0 15977 30608.140625 0.3078952218125606 3 -0.060302734375 2 Oxidation (M) _EM(Oxidation (M))DYLPIAL_ REV__ENSG00000075856|ENST00000546815|SART3;REV__nc|ENSG00000075856|Q15020-2|SART3;REV__nc|ENSG00000075856|Q15020-4|SART3 11.640296217721598 0.25978676193971967 2 VA{I|L} 3 -1 28.812 0 0 2.669 0 0 778.3235951154312 0 778.3235951154312 0 3.406206186877938 0 0 0 0.5 0 0 0 VA{I|L} 2.669 - 53 NaN NaN 119818.8 NaN 12509 3468 15977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15980 69.106 NaN 306380 35 0 35515 0.261 + 9753 HYIDAGYLGF 10 61 578.27783203125 NaN 0 578.27783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HYIDAGYLGF_ ENSG00000115207|ENST00000264720|GTF3C2 14.838274106304384 0.3224471714378502 2 {I|L}G 2 8 22.078 0 0 1.9123 0 0 819.3574665998061 162.05559717349846 981.4130637733045 0 0 0 0 0 1.3494850021680094 0 0 0 + {I|L}G 1.9123 + + 28 + NaN NaN 133072.3 NaN 12510 3468 15977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15981 69.109 NaN 109820 35 0 5119.1 0.261 + 33315 YFTKIRKAL 9 47 570.3513793945312 NaN 0 570.3513793945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YFTKIRKAL_ REV__ENSG00000182333|ENST00000238983|LIPF;REV__nc|ENSG00000182333|P07098-2|LIPF;REV__nc|ENSG00000182333|P07098-3|LIPF;REV__nc|ENSG00000182333|P07098-4|LIPF 2.302733041254933 0.2840881193086663 2 {I|L} 1 -1 6.9897 0 0 0.61494 0 0 129.10865943783455 891.4275606744749 1020.5362201123094 0 0 0 0 0 0 0 0 0 {I|L} 0.61494 + + 5 + NaN NaN 105856 NaN 12511 3468 15977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15982 69.112 NaN 100300 35 0 8208.8 0.261 + -1 KNIYNVMAGF 10 52 586.7908325195312 NaN 0 586.7908325195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _KNIYNVM(Oxidation (M))AGF_ REV__ABHD2|p.K193N|1|0.19|ENSG00000140526|chr15:89175852-89175852|G/C|missense_variant 10.073929032068715 0.33156240198919784 2 G{[MS]|[{M(Oxidation (M))|F}A]}A{I|L}ER 7 -1 27.069 0 0 2.3105 0 0 165.08173765967632 259.1077974908813 424.1895351505576 0 0 0 0 0 1.25 0 0 0 G{[MS]|[{M(Oxidation (M))|F}A]}A{I|L}ER 2.3105 - 58 + NaN NaN 102162.9 NaN 12512 3468 15977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15984 69.117 NaN 64922000 35 0 7231600 0.327 + 19814 NYAWVYYHL 9 126 614.7931119449629 1227.5716709567257 2 614.7936401367188 MULTI HCD FTMS 0 0 0 15983 19813490 0.3119006101092905 -1 0.0193023681640625 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 123.87 0 0 10.09 10.09 96.388 0 0 0 29.5205343810445 16.478174818886373 16.478174818886373 15.083559388717376 0 2.8494850021680094 1.6989700043360187 0 2.6778259348524363 + + [YN]AWVYYH{I|L};[YN]AWVYNW{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};[YN]AWVYN{I|L}W;[YN]AWVYGGW{I|L};NYAWVYYH{I|L};[YN]AWVYGG{I|L}W;[YN]AVWYNW{I|L};[YN]WAVYNW{I|L} 10.09;8.8617;8.7713;8.739;8.345;8.1115;7.6856;7.5949;7.5426;7.5103 +;-;-;-;-;-;+;-;-;- + 16068 NaN NaN 1341906.4 NaN 12513 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15985 69.121 NaN 5279600 35 0 375360 0.204 + -1 TPSWHSTPAVC 11 141 621.7823961721873 1241.5502394111745 2 621.7822265625 MULTI HCD FTMS 0 0 0 15983 2863617 0.5277501181791292 -1 0.0193023681640625 2 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 86.225 0 0 6.945 6.945 91.229 0 0 0 9.060508939769747 37.24932183384787 9.060508939769747 10.567558049300231 0 2.274227503252014 1.5228787452803376 1.1861818737241734 0.9559771852360797 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCVGERAY;[YN]APCVR{[DA]|[EG]}AY;[YN]AW[{M(Oxidation (M))|F}E]QWV;[YN]AW[{M(Oxidation (M))|F}E]QVW;[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCRE{I|L}NY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NPCVYQ[DG]{I|L};[YN]AWVYP[SG]W 6.945;6.0938;5.6315;5.4539;5.4323;5.4321;5.4146;5.3047;5.0963;5.048 -;-;-;-;-;-;-;-;-;- 52662 NaN NaN 584608 NaN 12514 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15986 69.124 NaN 465230 35 0 58092 0.261 + 1174 AYLESFYKF 9 76 584.2894496602338 1166.5643463872675 2 584.28955078125 MULTI HCD FTMS 0 0 0 15983 204268.3125 0.009412646056885717 54 -1.3731613159179688 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 110.6747026088012 0.0028322563155251486 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 103.47 0 0 8.8697 8.8697 96.908 0 0 0 25.642492736872597 88.7781282840541 25.642492736872597 30.440680443502757 0 3.1549471895720984 2 1.110924374808178 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]AES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VG][YT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[RH]E{I|L}{[ES]|[DT]|[{I|L}C]};[Y{I|L}]AE[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[Y{I|L}]AQQSE{I|L}{[ES]|[DT]|[{I|L}C]} 8.8697;6.2603;5.9957;4.9249;4.6869;4.5378;4.2076;3.9779;3.3863;3.1082 +;-;-;-;-;-;-;-;-;- + 806 NaN NaN 147125.9 NaN 12515 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15987 69.127 NaN 272160 35 0 37746 0.261 -1 LYMAFFCIL 9 55 589.2929245667173 1176.5712962002344 2 589.293701171875 MULTI HCD FTMS 0 0 0 15983 39092.7109375 0.05920120217127955 4 -0.08963775634765625 4 Carbamidomethyl (C) _LYMAFFC(Carbamidomethyl (C))IL_ ENSG00000166575|ENST00000305494|TMEM135;ENST00000529023.5_1_11:86749009-86868454:+|nuORF;nc|ENSG00000166575|Q86UB9-2|TMEM135 14.581692164780916 0.23437375358055648 2 Y{I|L}{I|L} 3 -1 35.445 0 0 3.0126 0 0 769.3295454079393 0 769.3295454079393 0 11.977437731477423 0 0 0 0.9247425010840047 0 0 0 Y{I|L}{I|L} 3.0126 - 34 NaN NaN 134358.9 NaN 12516 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15988 69.13 NaN 516870 35 0 33837 0.261 + 11967 KFNPVSFTW 9 85 563.2902527931236 1124.5659526530471 2 563.2906494140625 MULTI HCD FTMS 0 0 0 15983 32354.318359375 0.016905944877973398 22 -0.5927352905273438 5 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 38.175570920033316 0.07371992880350783 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K[VP]S{M(Oxidation (M))|F}TW 9 2 + 59.601 0 0 5.2999 5.2999 85.096 0 0 0 5.72559982972642 12.995587109089044 5.72559982972642 5.72559982972642 0 1.75 0 0 0.9247425010840047 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K[VP]S{M(Oxidation (M))|F}TW;{[CT]|[{M(Oxidation (M))|F}G]}GK[VP]S{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}Q{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}AAV{[QV]|[N{I|L}]|[RA]|[KV]}W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}Q{I|L}W{[QV]|[N{I|L}]|[RA]|[KV]};{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}Q{I|L}W{[QV]|[N{I|L}]|[RA]|[KV]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}AA[KP]TW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[VA]|[{I|L}G]}{I|L}Q{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[AG]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}AAVW{[QV]|[N{I|L}]|[RA]|[KV]} 5.2999;4.7908;3.7402;3.4568;3.4334;3.2565;3.1926;3.0302;2.9214;2.8114 -;-;-;-;-;-;-;-;-;- 1716 NaN NaN 172546 NaN 12517 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15989 69.134 NaN 217180 35 0 25068 0.261 + 2094 DFDQLLEAL 9 65 532.2689998259888 1062.5234467187774 2 532.26953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _DFDQLLEAL_ ENSG00000107719|ENST00000263563|PALD1 29.84058131909904 0.11198220037953927 2 {I|L}EA{I|L} 4 5 40.538 0 0 3.8153 0 0 618.2661610334 0 618.2661610334 0 16.074483545810182 0 0 0 1.3807196863200843 0 0 0 + {I|L}EA{I|L} 3.8153 + + 83 NaN NaN 121090.9 NaN 12518 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15990 69.137 NaN 257930 35 0 19697 0.261 -1 VYPLMKEYF 9 56 603.2981567382812 NaN 0 603.2981567382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ ENSG00000100109|ENST00000407690|TFIP11 13.90604991867851 0.22786006501039813 2 M{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 4 -1 22.295 0 0 1.8508 0 0 131.1057664249318 516.2566012018186 647.3623676267505 0 0 0 0 0 0.4247425010840047 0 0 0 M{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 1.8508 - 88 + NaN NaN 126355.1 NaN 12519 3469 15983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15992 69.142 NaN 1042900 35 0 282680 0.327 + 29573 VADPVEAVL 9 59 456.7555727363678 911.4965925395356 2 456.75543212890625 MULTI HCD FTMS 0 0 0 15991 932820.8125 1 0 0 1 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 78.14939416004806 0.006451203201226903 2 {[VA]|[{I|L}G]}DPVEAV{I|L} 9 0 + 87.585 0 0 9.609 9.609 95.33 0 0 0 20.87128018967597 70.59562510389476 20.87128018967597 11.989700043360187 0 2.774227503252014 1.5228787452803376 0 0 + + {[VA]|[{I|L}G]}DPVEAV{I|L};{[VA]|[{I|L}G]}DPVE{I|L}G{I|L} 9.609;8.2936 +;- + 152 NaN NaN 247072.3 NaN 12520 3470 15991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15993 69.146 NaN 1296800 35 0 245620 0.261 + 19731 NYATQQEKGST 11 93 409.52620815082435 1225.5567950526731 3 409.5259704589844 MULTI HCD FTMS 0 0 0 15991 376934.78125 1 0 0 2 Unmodified _NYATQQEKGST_ REV__ENSG00000152092|ENST00000361833|ASTN1;REV__nc|ENSG00000152092|O14525-3|ASTN1;REV__nc|ENSG00000152092|O14525|ASTN1 13.534932898082838 0.33915209766063664 2 YNA[PS]VYY 8 -1 68.837 0 0 5.6168 0 0 0 265.13010584049067 265.13010584049067 54.85776296228558 0 0 0 0 1.8494850021680094 2 0.4247425010840047 0 YNA[PS]VYY 5.6168 - 929 + NaN NaN 302896.8 NaN 12521 3470 15991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15994 69.15 NaN 1056200 35 0 401150 0.261 + 33600 YIRERLLPIF 10 59 440.59939643404897 1318.776359902347 3 440.59918212890625 MULTI HCD FTMS 0 0 0 15991 487251.21875 0.8551637953776735 2 -0.04534912109375 3 Unmodified _YIRERLLPIF_ REV__ENSG00000103043|ENST00000261776|VAC14 5.40270961882225 0.4467063037482923 2 {I|L}{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.2579 0 0 1040.6121691729413 0 1040.6121691729413 0 4.670306400511706 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2579 + + 42 NaN NaN 254203.6 NaN 12522 3470 15991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15995 69.153 NaN 230160 35 0 30418 0.261 + 20781 PGTTDPAVIL 10 52 492.2740003720195 982.533447810839 2 492.2745666503906 MULTI HCD FTMS 0 0 0 15991 140972.234375 0.8972277917743091 -3 0.07694244384765625 4 Unmodified _PGTTDPAVIL_ ENSG00000146221|ENST00000371505|TCTE1 10.073929032068715 0.4168838835836452 2 V{I|L}{I|L} 3 7 36.198 0 0 3.6841 0 0 639.2865927743717 0 639.2865927743717 0 20 0 0 0 1 0 0 0 + V{I|L}{I|L} 3.6841 + + 47 NaN NaN 124778.8 NaN 12523 3470 15991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15997 69.158 NaN 1988300 35 0 177760 0.327 + -1 STNVAPCMECP 11 111 427.83475019449213 1280.4824211836765 3 427.8347473144531 MULTI HCD FTMS 0 0 0 15996 1120168.375 0.7530498767612395 1 -0.029327392578125 1 2 Carbamidomethyl (C),Oxidation (M) _STNVAPC(Carbamidomethyl (C))M(Oxidation (M))EC(Carbamidomethyl (C))P_ REV__ENSG00000166147|ENST00000316623|FBN1 3.3557259375316324 0.404203592500566 2 [YN]A 3 -1 22.051 0 0 1.7221 0 0 0 929.3163443974187 929.3163443974187 1.3502935127679194 0 0 0 0 0 1.6989700043360187 0 0 [YN]A 1.7221 - 488 NaN NaN 383388.7 NaN 12524 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15998 69.162 NaN 2783100 35 0 218800 0.261 + 2955 DYVEGLRVF 9 118 549.2850743294578 1096.5555957257154 2 549.2852783203125 MULTI HCD FTMS 0 0 0 15996 1043033.375 0.770766048952793 1 -0.029327392578125 2 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 110.5527297667825 0.0028521687250969148 2 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 114.48 0 0 10.44 10.44 93.03 0 0 0 7.889527258359351 7.889527258359351 7.889527258359351 7.889527258359351 0 3.2302046884880937 1.6989700043360187 1.9604093769761874 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};DYVEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DG{I|L}RV{M(Oxidation (M))|F};[YV]DEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VT[TP]RV{M(Oxidation (M))|F};[YN]AGTG{I|L}[VG]V{M(Oxidation (M))|F};[YN]QTG{I|L}[VG]V{M(Oxidation (M))|F};[YV]EDG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[RE]|[WV]}RV{M(Oxidation (M))|F} 10.44;9.7204;8.9777;8.2555;7.8228;7.7761;7.3244;6.9992;6.7933;6.3606 +;+;-;-;-;-;-;-;-;- + 8427 NaN NaN 513491.3 NaN 12525 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 15999 69.166 NaN 930420 35 0 78127 0.263 + 19152 NGQQVCANQYQ 11 94 418.18353109648706 1251.5287638896611 3 418.1832580566406 MULTI HCD FTMS 0 0 0 15996 338018.0625 1 0 0 3 Unmodified _NGQQVCANQYQ_ REV__ENSG00000181004|ENST00000314218|BBS12 8.745405648335112 0.3805662881914433 2 NYA[{M(Oxidation (M))|F}V]N 6 -1 48.606 0 0 3.8837 0 0 0 540.1691378229124 540.1691378229124 30.379099962974152 0 0 0 0 0.9247425010840047 2 0 0.2614393726401688 NYA[{M(Oxidation (M))|F}V]N 3.8837 - 151 + NaN NaN 221899.1 NaN 12526 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16000 69.169 NaN 463880 35 0 46760 0.261 + 3084 EAIAELDTL 9 68 487.7555652556235 NaN 0 487.7556457519531 PEAK HCD FTMS 0 0 0 15996 192945.984375 0.8409142926875476 1 -0.029327392578125 4 Unmodified _EAIAELDTL_ ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;YWHAZ|p.S207I|1|0.43|ENSG00000164924|chr8:100924013-100924013|C/A|missense_variant 115.6920309560759 1.4577636057018595E-08 2 AE{I|L}D 4 5 48.193 0 0 4.9505 0 0 313.16254545089697 229.11910425357658 542.2816497044736 0 0 0 0 0 1.805462187404089 0 1.774227503252014 0 + AE{I|L}D 4.9505 + + 74 + NaN NaN 157883.2 NaN 12527 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16001 69.172 NaN 923740 35 0 172420 0.261 + 31895 VYNIHLAVNF 10 84 595.3219090055763 1188.6292650779526 2 595.322998046875 MULTI HCD FTMS 0 0 0 15996 23497.96484375 0.007751641253238859 29 -0.7867202758789062 5 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 41.8396318013385 0.12944265636084 2 [H{I|L}]Y{[NV]|[RG]}{I|L}AVN{M(Oxidation (M))|F} 10 4 + 48.183 0 0 4.0537 4.0537 84.837 0 0 0 6.7686309470583765 27.951265191687973 6.7686309470583765 9.164539485499247 0 0.7614393726401688 1.5228787452803376 0 0.4247425010840047 [H{I|L}]Y{[NV]|[RG]}{I|L}AVN{M(Oxidation (M))|F};[H{I|L}]Y{[NV]|[RG]}{I|L}AVGG{M(Oxidation (M))|F};[H{I|L}]Y{[NV]|[RG]}{I|L}ANV{M(Oxidation (M))|F};{[WN]|[YH]}[KT]P{I|L}AVN{M(Oxidation (M))|F};[H{I|L}]Y{[NV]|[RG]}{I|L}AGGV{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{[NV]|[RG]}{I|L}AVN{M(Oxidation (M))|F};{[WN]|[YH]}[KT]P{I|L}AVGG{M(Oxidation (M))|F};{[WN]|[YH]}[KT]P{I|L}ANV{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{[NV]|[RG]}{I|L}AVGG{M(Oxidation (M))|F};{[WN]|[YH]}{I|L}{[NV]|[RG]}{I|L}ANV{M(Oxidation (M))|F} 4.0537;3.2826;3.1453;2.7161;2.3743;2.3147;1.9451;1.8078;1.5437;1.4064 -;-;-;-;-;-;-;-;-;- 983 NaN NaN 228100.8 NaN 12528 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16002 69.176 NaN 110200 35 0 14941 0.263 + 8106 GLDMRMVI 8 45 467.7464389604498 933.4783249876996 2 467.7467346191406 MULTI HCD FTMS 0 0 0 15996 87456.5859375 0.46377667977541404 1 -0.029327392578125 6 Unmodified _GLDMRMVI_ ENSG00000133056|ENST00000684373|PIK3C2B 13.90604991867851 0.4914777452512057 2 VAD 3 7 32.435 0 0 3.4746 0 0 0 645.3213024886128 645.3213024886128 11.465912507003608 0 0 0 0 0.9247425010840047 0 0 0 VAD 3.4746 - 22 + NaN NaN 103109.4 NaN 12529 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16003 69.179 NaN 509510 35 0 31572 0.261 + 27679 TALWELHAL 9 74 527.2903496477594 1052.5661463623187 2 527.2899780273438 MULTI HCD FTMS 0 0 0 15996 129276.5078125 0.32037857094453964 6 -0.152099609375 7 Unmodified _TALWELHAL_ ENSG00000173145|ENST00000371361|NOC3L;NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant 47.748688679222035 0.03472022231463587 2 [TA]{I|L}WE{I|L}HA{I|L} 9 0 + 56.436 0 0 5.3617 5.3617 90.416 0 0 0 7.147642715192504 27.842276587477954 7.147642715192504 20.68352434877157 0 2.3494850021680094 0 0 0 + + [TA]{I|L}WE{I|L}HA{I|L};{[QN]|[E{I|L}]|[KN]}P{I|L}EW{I|L}[PG];[TA]{I|L}{[DA]|[EG]}[R{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}P{I|L}EW[PG]{I|L};[W{I|L}][TA]E{I|L}HA{I|L};[Y{I|L}]S[RP][{I|L}T]G{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[{I|L}P]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}HA{I|L};[TA][{M(Oxidation (M))|F}V]{[MS]|[{M(Oxidation (M))|F}A]}WV{I|L} 5.3617;3.3967;2.549;2.4684;2.2522;1.5506;0.53059;0.169 +;-;-;-;-;-;-;- + 662 NaN NaN 160631.2 NaN 12530 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16004 69.182 NaN 178280 35 0 18582 0.261 + 32964 YALNFKSAI 9 62 513.7845041894516 1025.554455445703 2 513.7842407226562 MULTI HCD FTMS 0 0 0 15996 31352.9453125 0.25626251004603073 1 -0.029327392578125 8 Unmodified _YALNFKSAI_ REV__tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1 19.256988751693697 0.19398022840297344 2 KS{I|L}A{I|L} 5 -1 38.047 0 0 3.7099 0 0 495.22447402168126 0 495.22447402168126 0 15.395906230238126 0 0 0 0.8494850021680094 0 0 0 KS{I|L}A{I|L} 3.7099 - 216 NaN NaN 115946.4 NaN 12531 3471 15996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16006 69.187 NaN 380860 35 0 88768 0.327 -1 NYTICQCDHL 10 53 422.84671891260007 1265.5183273380003 3 422.8466491699219 MULTI HCD FTMS 0 0 0 16005 221813.328125 0.22691273808805282 2 -0.04205322265625 1 Carbamidomethyl (C) _NYTIC(Carbamidomethyl (C))QCDHL_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 5.40270961882225 0.4467063037482923 2 N{I|L} 2 -1 25.969 0 0 2.0521 0 0 1020.3766538945131 0 1020.3766538945131 0 20.48455006504028 0 0 0 0.5 0 0 0.3494850021680094 N{I|L} 2.0521 - 8 NaN NaN 145825.7 NaN 12532 3472 16005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16007 69.192 NaN 587910 35 0 86096 0.261 + 27228 SYNPAENAVLL 11 76 595.8064426272462 1189.5983323212922 2 595.8062133789062 MULTI HCD FTMS 0 0 0 16005 119829.78125 0.600208790569785 2 -0.04205322265625 2 Unmodified _SYNPAENAVLL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 33.82136114134338 0.17674243982743054 2 ENAV{I|L}{I|L} 6 5 46.327 0 0 3.8943 0 0 532.2281971662125 0 532.2281971662125 0 33.62388990929604 0 0 0 1.066901560044258 0 0.4247425010840047 0.3252574989159953 + ENAV{I|L}{I|L} 3.8943 + + 211 NaN NaN 182414.4 NaN 12533 3472 16005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16008 69.195 NaN 209040 35 0 24110 0.261 + 33842 YLKSDEYFL 9 47 589.2929245667173 1176.5712962002344 2 589.2914428710938 MULTI HCD FTMS 0 0 0 16005 76331.65625 0.1155950995813403 7 -0.1884002685546875 3 Unmodified _YLKSDEYFL_ REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant;REV__ENSG00000099338|ENST00000409235|CATSPERG;REV__ENST00000412458.6_1_19:38845366-38860119:+|nuORF;REV__ENST00000471517.5_1_19:38845366-38853372:+|nuORF 10.823927491677226 0.26684000660059787 2 Y{I|L}{I|L} 3 -1 30.445 0 0 2.5876 0 0 769.3275624005875 0 769.3275624005875 0 21.888793896675267 0 0 0 0.4247425010840047 0 0 0 Y{I|L}{I|L} 2.5876 - 28 NaN NaN 126089.3 NaN 12534 3472 16005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16009 69.198 NaN 252230 35 0 27464 0.261 + 10082 IFFENHPYF 9 65 607.2872616918412 1212.5599704504823 2 607.2865600585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 27.628801355627647 0.12213550946336599 2 SE{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 5 7 17.091 0 0 1.4095 0 0 589.2645741193375 0 589.2645741193375 0 1.633031284438358 0 0 0 0.4247425010840047 0 0 0 SE{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 1.4095 - 96 NaN NaN 128308.1 NaN 12535 3472 16005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16010 69.202 NaN 1010800 35 0 254400 0.261 + 24432 RYLDEINLL 9 76 574.8190799158277 1147.6236068984554 2 575.3200073242188 MULTI HCD FTMS 0 0 0 16005 198904.1875 0.01809938505244298 -6 0.1582794189453125 5 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 70.33199760932243 0.0089807860198535 2 DE{I|L}N{I|L}{I|L} 6 3 71.063 0 0 6.1922 0 0 432.2475758283219 0 432.2475758283219 0 39.185756335471424 0 0 0 1.805462187404089 0 0.7302046884880937 0.3054621874040891 + DE{I|L}N{I|L}{I|L} 6.1922 + + 424 NaN NaN 239295.9 NaN 12536 3472 16005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16012 69.207 NaN 943520 35 0 66074 0.327 + -1 NYRFLEGCES 10 100 637.777827919255 1273.5411029053098 2 637.7766723632812 MULTI HCD FTMS 0 0 0 16011 559160.5625 1 0 0 1 Carbamidomethyl (C) _NYRFLEGC(Carbamidomethyl (C))ES_ REV__ENSG00000186230|ENST00000334181|ZNF749 29.84058131909904 0.23356904650364865 2 [YN]AYPVWA{M(Oxidation (M))|F}GS 11 -1 + 69.457 0 0 5.4539 5.4539 84.054 0 0 0 13.575145734024119 5.774509799928715 5.774509799928715 2.26739746636585 0 1.0774509799928715 1.5228787452803376 0 0.555462187404089 [YN]AYPVWA{M(Oxidation (M))|F}GS;[YN]AYP[R{M(Oxidation (M))|F}]AEGS;[YN]AW[SG][KS]A{M(Oxidation (M))|F}GS;[YN]AWA{I|L}{[YD]|[{M(Oxidation (M))|F}M]}DGS;[YN]AYPN{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}GS;[YN]AY{[QV]|[N{I|L}]|[RA]|[KV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EGS;[YN]AYPVWA[CS]T;[YN]A{[QC]|[C(Carbamidomethyl (C))A]}V[KS]A{M(Oxidation (M))|F}GS;[YN]AYPV{[CT]|[{M(Oxidation (M))|F}G]}{[QD]|[EN]|[WG]|[KD]|[RS]}T;[YN]AYP[R{M(Oxidation (M))|F}]A[DG]T 5.4539;5.2758;4.2137;3.9137;3.7845;3.7644;3.7452;3.7008;3.6708;3.5671 -;-;-;-;-;-;-;-;-;- 4366 NaN NaN 230864.1 NaN 12537 3473 16011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16013 69.211 NaN 859250 35 0 220220 0.261 + -1 YNGPCCMAHR 10 83 641.2487789612193 1280.4830049892385 2 641.2486572265625 MULTI HCD FTMS 0 0 0 16011 357239.4375 0.7057735551943031 3 -0.07727813720703125 2 2 Carbamidomethyl (C),Oxidation (M) _YNGPC(Carbamidomethyl (C))C(Carbamidomethyl (C))M(Oxidation (M))AHR_ REV__ENSG00000107984|ENST00000373970|DKK1 6.723162845929126 0.4397169348982109 2 [YN]A 3 -1 25.731 0 0 2.0095 0 0 0 929.3176662043353 929.3176662043353 9.488474775526186 0 0 0 0 0.3054621874040891 1.5228787452803376 0 0 [YN]A 2.0095 - 71 NaN NaN 215322.9 NaN 12538 3473 16011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16014 69.215 NaN 741560 35 0 79846 0.261 + 14375 LEEQHHQAMQ 10 78 625.7837693869168 1249.5529858406335 2 625.7847900390625 MULTI HCD FTMS 0 0 0 16011 449789.46875 1 0 0 3 Unmodified _LEEQHHQAMQ_ ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3 26.268140514670165 0.2654086933305545 2 [YN]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[NP]YH{I|L} 10 9 + 73.632 0 0 5.8926 5.8926 85.197 0 0 0 16.237577350063788 51.7300782528725 16.237577350063788 3.424226808222059 0 1.7614393726401687 2 0 0.9361818737241734 [YN]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[NP]YH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}G[NP]YH{I|L};[YN]A{[DS]|[MA]|[CV]|TT}[HM]YH{I|L};[YN]A{[DA]|[EG]}{[{M(Oxidation (M))|F}H]|[RQ]}YH{I|L};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}G[NP]YH{I|L};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}G[TA]MAH{I|L};[YN]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[QT]MAH{I|L};[MT][Y{M(Oxidation (M))|F}]{I|L}YYH{I|L};[YN]A{[DA]|[EG]}[YR]{M(Oxidation (M))|F}[KC];[MT][KA]{[{M(Oxidation (M))|F}H]|[RQ]}WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.8926;5.6186;5.0924;4.5773;4.4319;3.3714;2.8451;2.5771;2.5582;2.1969 -;-;-;-;-;-;-;-;-;- 776 NaN NaN 199732 NaN 12539 3473 16011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16015 69.218 NaN 343190 35 0 38361 0.264 + 18183 MPDLDLHL 8 52 477.24170706683793 952.4688612004759 2 477.2413330078125 MULTI HCD FTMS 0 0 0 16011 219339.46875 1 0 0 4 Unmodified _MPDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 50.855029805455786 0.12247309515496523 2 MPD{I|L}D{I|L}[H{I|L}] 8 0 + 68.923 0 0 7.2363 7.2363 89.039 0 0 0 44.92218145245273 4.6040937697618745 4.6040937697618745 7.146942222687173 0 1.4308845489566888 2 0 0 + + MPD{I|L}D{I|L}[H{I|L}];MPD{I|L}DH{I|L}{I|L};MPD{I|L}VE[H{I|L}];{NN|[MP]|[D{I|L}]|[EV]}D{I|L}D{I|L}[H{I|L}];MK[YK][PA]{[ES]|[DT]|[{I|L}C]} 7.2363;6.4859;6.3953;1.7537;0.46637 +;-;-;+;- + 256 + NaN NaN 144715.7 NaN 12540 3473 16011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16016 69.221 NaN 392900 35 0 59703 0.261 + -1 IEDCCQKWQ 9 57 633.7664513236438 1265.5183497140874 2 633.7675170898438 MULTI HCD FTMS 0 0 0 16011 108572.8359375 0.40722479165120967 5 -0.13634490966796875 5 2 Carbamidomethyl (C) _IEDC(Carbamidomethyl (C))C(Carbamidomethyl (C))QKWQ_ REV__ENSG00000114993|ENST00000272430|RTKN;REV__nc|ENSG00000114993|Q9BST9-2|RTKN;REV__nc|ENSG00000114993|Q9BST9-3|RTKN 7.289230182591677 0.29575926068275815 2 {I|L}H 2 -1 17.959 0 0 1.4191 0 0 0 1012.3513913717865 1012.3513913717865 4.286662482156345 0 0 0 0 0 0 0 0 {I|L}H 1.4191 - 55 + NaN NaN 154028.5 NaN 12541 3473 16011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16017 69.224 NaN 204800 35 0 46959 0.261 + 9630 HTLLCPSLGRS 11 44 592.3183322096107 NaN 0 592.317626953125 PEAK HCD FTMS 0 0 0 16011 83448.2109375 0.6612365356123339 1 -0.02274322509765625 6 Unmodified _HTLLCPSLGRS_ ENST00000361981.7_1_X:153127328-153128099:-|nuORF 4.897010918128616 0.3282287337590871 2 {M(Oxidation (M))|F} 1 11 5.4846 0 0 0.46376 0 0 773.4218989389495 259.1084383600219 1032.5303372989715 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46376 - 4 + NaN NaN 120779.4 NaN 12542 3473 16011 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16019 69.229 NaN 2460800 35 0 157680 0.327 -1 YNAPTDHGLCI 11 123 630.7878241196413 1259.5610953060825 2 630.7877197265625 MULTI HCD FTMS 0 0 0 16018 1816917.75 0.473110663106849 4 -0.1136016845703125 1 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 2 NYAWMYT 7 -1 83.965 0 0 6.6662 0 0 0 327.1424959772094 327.1424959772094 42.53669175573954 0 0 0 0 2.274227503252014 1.6989700043360187 1.079689690656103 0 NYAWMYT 6.6662 - 23729 + NaN NaN 396833.1 NaN 12543 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16020 69.234 NaN 374540 35 0 41522 0.261 + 14376 LEEQHHQAMQ 10 74 625.7837693869168 1249.5529858406335 2 625.782958984375 MULTI HCD FTMS 0 0 0 16018 163802.09375 0.3641750310544593 1 -0.03598785400390625 2 Unmodified _LEEQHHQAMQ_ ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3 15.248480904072842 0.3684828712757339 2 [YN]AW{[{M(Oxidation (M))|F}H]|[RQ]}YH 8 9 65.372 0 0 5.2316 0 0 0 128.07670026439078 128.07670026439078 49.441811241770125 0 0 0 0 2.2614393726401687 2 0 0.6382104921644451 [YN]AW{[{M(Oxidation (M))|F}H]|[RQ]}YH 5.2316 - 445 NaN NaN 144753.3 NaN 12544 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16021 69.237 NaN 1004700 35 0 96639 0.261 + 12719 KYALLLQEL 9 86 545.8291909349945 1089.6438289367889 2 545.8292846679688 MULTI HCD FTMS 0 0 0 16018 382672.34375 0.3864051625218975 -4 0.08740234375 3 Unmodified _KYALLLQEL_ ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4 96.93554129104106 0.004344229100022454 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{I|L}QE{I|L} 9 2 + 83.488 0 0 7.6619 7.6619 91.488 0 0 0 14.71858081162884 54.731616095482046 14.71858081162884 9.208187539523749 0 2.1861818737241734 1.5228787452803376 0.23965182871044374 0.23965182871044374 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{I|L}[AG]E{I|L};[YK]A{I|L}{I|L}{I|L}QE{I|L};[YK]A{I|L}{I|L}{I|L}[AG]E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}K{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{M(Oxidation (M))|F}V][KT]{I|L}{I|L}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}K{I|L}[AG]E{I|L};[{M(Oxidation (M))|F}V][KT]{I|L}{I|L}[AG]E{I|L};[{M(Oxidation (M))|F}V][{I|L}T]K{I|L}QE{I|L} 7.6619;6.8169;6.2035;5.3585;5.2203;4.475;4.3926;4.3752;3.5475;3.3234 -;-;+;-;-;-;-;-;-;- + 828 NaN NaN 242110.7 NaN 12545 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16022 69.241 NaN 849330 35 0 168220 0.261 + 26769 SYGDILHVI 9 77 508.77415865977554 1015.5337643863511 2 508.7742004394531 MULTI HCD FTMS 0 0 0 16018 323589.71875 0.36450625173851053 -4 0.08740234375 4 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 120.45040980043947 0.0012363446172167195 2 SYGD{I|L}{I|L}HV{I|L} 9 0 + 98.822 0 0 9.7311 9.7311 92.951 0 0 0 71.99478448944497 8.384767769392738 8.384767769392738 8.732288804757232 0 3.1989700043360187 2 0 0 + + SYGD{I|L}{I|L}HV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GD{I|L}{I|L}HV{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AVVTHV{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}HV{I|L};[Y{I|L}]D[SG]{I|L}HV{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[VG]THV{I|L};[Y{I|L}]D[VG]THV{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[TV]|[{I|L}S]}[YG]HV{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AVV{I|L}[HS]{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[VP][PS]YN{I|L} 9.7311;8.8712;5.3771;4.8716;4.6706;3.6087;3.4077;2.2321;2.1346;0.38484 +;+;-;-;-;-;-;-;-;- + 468 + NaN NaN 235990.1 NaN 12546 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16023 69.244 NaN 439880 35 0 25910 0.261 + 18104 MPAFIFEHI 9 90 560.7781186049104 1119.5416842766208 2 560.7784423828125 MULTI HCD FTMS 0 0 0 16018 91459.59375 0.26871253244819787 4 -0.1136016845703125 5 Oxidation (M) _M(Oxidation (M))PAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 104.79918948944588 0.003791450360204016 2 {M(Oxidation (M))|F}PA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L} 9 0 + 69.72 0 0 6.2276 6.2276 84.784 0 0 0 1.1670532451996252 1.1670532451996252 1.1670532451996252 1.1670532451996252 0 2.8169015600442577 0 0.25 0 + + {M(Oxidation (M))|F}PA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{M(Oxidation (M))|F}PA[{I|L}P]YYH{I|L} 6.2276;6.1233;3.0347 +;+;- + 758 + NaN NaN 167053.5 NaN 12547 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16024 69.247 NaN 359060 35 0 21643 0.261 + 2927 DYSPYFKTI 9 82 567.279159143842 1132.5437653544839 2 567.2789916992188 MULTI HCD FTMS 0 0 0 16018 162343.453125 0.4561541141664078 9 -0.25418853759765625 6 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 51.41523569358685 0.02959097413485123 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 35.731 0 0 3.1549 0 0 0 764.3989777810233 764.3989777810233 4.9116043618396255 0 0 0 0 1 1.6989700043360187 0.3054621874040891 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.1549 + + 390 NaN NaN 141256.1 NaN 12548 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16025 69.251 NaN 177430 35 0 28119 0.261 -1 ACGGTGCAVL 10 40 483.2112670073922 NaN 0 483.2112121582031 PEAK HCD FTMS 0 0 0 16018 19845.087890625 0.13282159246954434 1 -0.03598785400390625 7 2 Carbamidomethyl (C) _AC(Carbamidomethyl (C))GGTGC(Carbamidomethyl (C))AVL_ ENSG00000274523|ENST00000610322|RCC1L;ENST00000420642.1_7:74765936-74789271:+|nuORF;nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L 6.2057823575117 0.3348729994311477 2 VA 2 -1 8.4999 0 0 0.88136 0 0 131.09464551245622 660.1858004205686 791.2804459330248 0 0 0 0 0 0.3807196863200844 0 0 0 VA 0.88136 - 5 + NaN NaN 112049.1 NaN 12549 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16026 69.254 NaN 454760 35 0 84932 0.261 + 24624 RYLPTGSFPF 10 52 592.8085510866069 1183.6025492400138 2 592.8093872070312 MULTI HCD FTMS 0 0 0 16018 206867.625 0.032364687900588406 50 -1.2802581787109375 8 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 23.789781309258295 0.28859042913526417 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 7 33.94 0 0 2.8675 0 0 774.4028341354552 0 774.4028341354552 0 29.960762528683702 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 2.8675 + + 53 NaN NaN 155243.7 NaN 12550 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16027 69.257 NaN 454390 35 0 52893 0.261 -1 LHGCPDSKCSY 11 57 633.7664513236438 1265.5183497140874 2 634.2682495117188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _LHGCPDSKC(Carbamidomethyl (C))SY_ ENST00000235310.7_1_1:11734653-11734812:-|nuORF 7.101721422024254 0.3877749288398915 2 {I|L}H 2 -1 17.959 0 0 1.4191 0 0 0 1012.3518256282165 1012.3518256282165 8.226825097560422 0 0 0 0 0 0 0 0 {I|L}H 1.4191 + + 21 + NaN NaN 160169.1 NaN 12551 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16028 69.26 NaN 246080 35 0 18511 0.262 + 26927 SYLELVKSL 9 60 526.3054683154869 1050.5963836977737 2 526.3056640625 MULTI HCD FTMS 0 0 0 16018 44067.07421875 0.4632627642746502 1 -0.03598785400390625 10 Unmodified _SYLELVKSL_ ENSG00000143252|ENST00000367975|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;nc|ENSG00000143252|Q99643-5|SDHC 84.5221896805406 0.004669506596793478 2 {[TV]|[{I|L}S]}YE{I|L}VKS{I|L} 9 2 + 77.061 0 0 7.335 7.335 87.694 0 0 0 4.330532103693869 3.407227355490164 3.407227355490164 3.407227355490164 0 1.805462187404089 1.3010299956639813 0.7614393726401688 0 {[TV]|[{I|L}S]}YE{I|L}VKS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}VKS{I|L};{[MS]|[{M(Oxidation (M))|F}A]}HH{I|L}VKS{I|L} 7.335;7.0107;4.3415 -;+;- + 210 NaN NaN 128868.3 NaN 12552 3474 16018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16030 69.265 NaN 35368000 35 0 3995400 0.327 + 19815 NYAWVYYHL 9 108 614.7931119449629 1227.5716709567257 2 614.7935791015625 MULTI HCD FTMS 0 0 0 16029 28057362 0.44167424950663525 5 -0.13648223876953125 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 2 [YN]AWVYYH{I|L} 9 0 + 122.87 0 0 10.009 10.009 96.255 0 0 0 27.556584229283843 16.478174818886373 16.478174818886373 14.705673779823371 0 2.8494850021680094 1.6989700043360187 0 2.578340932684427 + + [YN]AWVYYH{I|L};[YN]AWVYNW{I|L};[YN]WAVYYH{I|L};[YN]AWVYGGW{I|L};NYAWVYYH{I|L};[YN]WAVYNW{I|L};NYAWVYN{I|L}W;[YN]AWVW[YN]{I|L};[YN]WAVYGGW{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L} 10.009;8.8114;8.658;8.0613;7.7645;7.4601;7.2642;7.2355;6.7099;5.8904 +;-;-;-;+;-;-;-;-;- + 7428 NaN NaN 740683.7 NaN 12553 3475 16029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16031 69.27 NaN 3874600 35 0 260880 0.213 + -1 TPSWHSTPAVC 11 137 621.7823961721873 1241.5502394111745 2 621.7821655273438 MULTI HCD FTMS 0 0 0 16029 3593158.5 0.6622009238705254 5 -0.13648223876953125 2 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 88.905 0 0 7.1608 7.1608 88.359 0 0 0 12.263078336680778 36.931339141784925 12.263078336680778 5.97391820405231 0 2.274227503252014 1.5228787452803376 1.2302046884880937 0.9757724967479859 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCVGERAY;[YN]APCVR{[DA]|[EG]}AY;[YN]APCVGERYA;[YN]APCVGVPHDA;[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}DA;[YN]APCVGV{[DA]|[EG]}HP;[YN]APCRE{I|L}NY;[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]APCVR{[DA]|[EG]}YA 7.1608;6.6796;6.0925;6.0638;5.9839;5.9179;5.7363;5.6933;5.6059;5.4767 -;-;-;-;-;-;-;-;-;- 46754 NaN NaN 487148.8 NaN 12554 3475 16029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16032 69.272 NaN 1024400 35 0 119480 0.261 + 11968 KFNPVSFTW 9 108 563.2902527931236 1124.5659526530471 2 563.773193359375 MULTI HCD FTMS 0 0 0 16029 75822.0859375 0.06428250113473678 26 -0.698822021484375 3 Unmodified _KFNPVSFTW_ ENSG00000124702|ENST00000326974|KLHDC3 43.77239144664712 0.04802738721622131 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP]KGW 10 7 + 47.769 0 0 4.2478 4.2478 83.134 0 0 0 4.457392241200097 4.316271552006654 4.316271552006654 4.457392241200097 0 2.2034021960761265 2 0.2302046884880938 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP]KGW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K[VP]S{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}S[VP][VG][KS];{[CT]|[{M(Oxidation (M))|F}G]}GK[VP]S{M(Oxidation (M))|F}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[K{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AVV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}M[KS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{I|L}][C(Carbamidomethyl (C))R]TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}M[KS];{[CT]|[{M(Oxidation (M))|F}G]}T{M(Oxidation (M))|F}S[VP]KGW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[RN]VV[VS] 4.2478;3.8514;3.5628;3.4127;3.2145;2.868;2.6498;2.3337;1.9742;1.9158 -;-;-;-;-;-;-;-;-;- 1372 NaN NaN 237228.8 NaN 12555 3475 16029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16033 69.276 NaN 228140 35 0 23388 0.261 -1 KYMDVQFDF 9 62 604.7687558006563 1207.5229586681126 2 604.768310546875 MULTI HCD FTMS 0 0 0 16029 141946.890625 1 0 0 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 32.037481411007896 0.10189719824197178 2 KN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5 -1 46.938 0 0 3.8871 0 0 538.2155018537125 0 538.2155018537125 0 39.97547537623447 0 0 0 1.3494850021680094 0 0 0 KN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.8871 - 206 NaN NaN 119374.1 NaN 12556 3475 16029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16034 69.279 NaN 363220 35 0 67461 0.261 + 33192 YFADVVVTLL 10 60 570.3228180628922 1138.6310831925844 2 570.3109130859375 MULTI HCD FTMS 0 0 0 16029 58433.37109375 0.9644779465174663 -3 0.07804107666015625 5 Unmodified _YFADVVVTLL_ REV__ENSG00000206113|ENST00000635017|CFAP99;REV__ENST00000511731.5_1_4:2428286-2451670:+|nuORF 20.453626601364224 0.3197956946484955 2 T{I|L}{I|L} 3 -1 20.674 0 0 1.8157 0 0 793.4085560529312 0 793.4085560529312 0 1.0083376013968568 0 0 0 0.4247425010840047 0 0.5 0 T{I|L}{I|L} 1.8157 + + 49 NaN NaN 150783.8 NaN 12557 3475 16029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16036 69.284 NaN 327020 35 0 85686 0.327 + 29574 VADPVEAVL 9 43 456.7555727363678 911.4965925395356 2 456.75567626953125 MULTI HCD FTMS 0 0 0 16035 202012.875 0.21656128625453455 6 -0.1667938232421875 1 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 52.268347100219714 0.028397529699942435 2 {[VA]|[{I|L}G]}D[VP]EAV{I|L} 9 0 + 64.359 0 0 7.0608 7.0608 95.316 0 0 0 5.6424927368725974 48.873949984654246 5.6424927368725974 64.35850004969453 0 2.8494850021680094 0 0 0 + + {[VA]|[{I|L}G]}D[VP]EAV{I|L} 7.0608 + + 63 NaN NaN 146262.5 NaN 12558 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16037 69.288 NaN 333100 35 0 52421 0.261 + 1175 AYLESFYKF 9 57 584.2894496602338 1166.5643463872675 2 584.289794921875 MULTI HCD FTMS 0 0 0 16035 174700.171875 0.008050151606047442 61 -1.5361175537109375 2 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 79.59630418116434 0.005983006570063981 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 99.873 0 0 8.5613 8.5613 93.828 0 0 0 25.642492736872597 86.68584453031144 25.642492736872597 10.07007180900061 0 3.142159058960253 2 0.7059771852360797 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESY{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESC(Carbamidomethyl (C))[{I|L}V]{[NV]|[RG]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES[CG][{I|L}V]{[NV]|[RG]};[RH]Y{[QG]|[NA]}[MT]K{M(Oxidation (M))|F};[YK]{[QG]|[NA]}[DV]E{I|L}{[ES]|[DT]|[{I|L}C]} 8.5613;7.6981;5.3097;4.5246;4.288;4.2574;3.9621;3.1764;2.5252;1.9864 +;-;-;-;-;-;-;-;-;- + 352 NaN NaN 137101.5 NaN 12559 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16038 69.292 NaN 392610 35 0 40521 0.261 + 6231 FPESSAIEAL 10 66 532.2689998259888 1062.5234467187774 2 532.2689208984375 MULTI HCD FTMS 0 0 0 16035 144618.609375 0.5491596761808315 -4 0.096588134765625 3 Unmodified _FPESSAIEAL_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-9|SON 27.628801355627647 0.2527626205058048 2 NA{I|L}[NG]EA{I|L} 8 7 50.126 0 0 4.7176 0 0 262.1349049298844 0 262.1349049298844 0 7.474250108400469 0 0 0 1 0 0 0.3494850021680094 NA{I|L}[NG]EA{I|L} 4.7176 - 451 NaN NaN 147458.1 NaN 12560 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16039 69.295 NaN 576180 35 0 223180 0.262 -1 0 53 440.59939643404897 1318.776359902347 3 440.599365234375 MULTI HCD FTMS 0 0 0 16035 133358.015625 0.23405369221749142 8 -0.22258758544921875 4 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.2913 0 0 1040.6127458005592 0 1040.6127458005592 0 22.74227503252014 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2913 - 23 NaN NaN 170379.4 NaN 12561 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16040 69.299 NaN 313510 35 0 25221 0.261 + 5212 FFDAELSQM 9 63 552.2393322777056 1102.464111622211 2 552.2393188476562 MULTI HCD FTMS 0 0 0 16035 80650.359375 0.7933177235159575 1 -0.02618408203125 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 62.57269311338072 0.013982455292112035 2 QV{[ES]|[DT]|[{I|L}C]}{I|L}SQ{M(Oxidation (M))|F} 8 4 55.53 0 0 5.0369 0 0 166.02201901940344 0 166.02201901940344 0 38.61407999752478 0 0 0 1.774227503252014 0 0.28872548999643577 0.6307196863200843 QV{[ES]|[DT]|[{I|L}C]}{I|L}SQ{M(Oxidation (M))|F} 5.0369 - 709 + NaN NaN 133857.3 NaN 12562 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16041 69.302 NaN 194330 35 0 7268.3 0.261 -1 FVDMEFLDQM 10 55 645.7745530498438 NaN 0 645.7747192382812 PEAK HCD FTMS 0 0 0 16035 12979.5458984375 0.11145427376524672 6 -0.1667938232421875 6 Oxidation (M) _FVDM(Oxidation (M))EFLDQM_ ENST00000498732.5_1_X:139791961-139816057:+|nuORF 3.2813086475875832 0.33737594360511275 2 Y 1 -1 3.9794 0 0 0.30859 0 0 296.08034281668125 827.3654013398526 1123.445744156534 0 0 0 0 0 0 0 0 0 Y 0.30859 - 16 + NaN NaN 123767.6 NaN 12563 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16042 69.305 NaN 194910 35 0 13206 0.262 -1 SYFRYSLM 8 79 541.7526778660186 1081.4908027988372 2 541.7515869140625 MULTI HCD FTMS 0 0 0 16035 12268.4189453125 0.16613696121331498 1 -0.02618408203125 7 Oxidation (M) _SYFRYSLM(Oxidation (M))_ ENSG00000071909|ENST00000408978|MYO3B;ENSG00000095777|ENST00000642920|MYO3A;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-6|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B 26.88365393820708 0.39599352634412927 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 30.534 0 0 2.8233 0 0 690.2767963064529 0 690.2767963064529 0 6.109243748081781 0 0 0 1.1861818737241734 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.8233 - 77 + NaN NaN 116044.2 NaN 12564 3476 16035 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16044 69.31 NaN 927370 35 0 71416 0.327 + 2956 DYVEGLRVF 9 98 549.2850743294578 1096.5555957257154 2 549.2850341796875 MULTI HCD FTMS 0 0 0 16043 287593.53125 0.21252179949269995 7 -0.19640350341796875 1 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 86.33184430468982 0.004622086694044132 2 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 102.9 0 0 9.3842 9.3842 95.009 0 0 0 22.06497875736474 16.478174818886373 16.478174818886373 11.53212513775344 0 3.2302046884880937 2 0.899649864804614 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DG{I|L}RV{M(Oxidation (M))|F};[YV]DEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VT[TP]RV{M(Oxidation (M))|F};[YV]EDG{I|L}RV{M(Oxidation (M))|F};[YN]A{[SA]|[TG]}G{I|L}[VG]V{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}ER[VG]V{M(Oxidation (M))|F};[YN][QT]G{I|L}[VG]V{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YDG{I|L}RV{M(Oxidation (M))|F} 9.3842;8.3325;7.3719;7.1521;6.7587;6.3203;6.1918;5.9454;5.8667;5.8635 +;-;-;-;-;-;-;-;-;- + 3060 NaN NaN 231980.5 NaN 12565 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16045 69.315 NaN 427030 35 0 51869 0.261 + 10129 IFLNKTFQW 9 75 598.826977809547 1195.6394026858939 2 598.8272705078125 MULTI HCD FTMS 0 0 0 16043 120863.6328125 0.38280977424669305 -3 0.080718994140625 2 Unmodified _IFLNKTFQW_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 84.5221896805406 0.004669506596793478 2 {I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}QW 9 0 + 84.123 0 0 7.0358 7.0358 90.339 0 0 0 13.777587793350534 13.777587793350534 13.777587793350534 9.208187539523749 0 2.9916440611282624 0 0 0.6861818737241735 + + {I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}GGKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}GGKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}[AG]W;{I|L}[QA]{I|L}[YK]{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NK[WQ][{M(Oxidation (M))|F}T] 7.0358;6.2656;6.0102;5.8835;5.2437;5.1133;5.1133;4.3468;2.1706;1.908 +;-;-;+;-;-;-;-;-;- + 615 + NaN NaN 151539.4 NaN 12566 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16046 69.318 NaN 290620 35 0 43838 0.264 -1 DLHHVLMSQM 10 59 409.52620815082435 1225.5567950526731 3 409.8606262207031 MULTI HCD FTMS 0 0 0 16043 68913.5859375 0.2051065966420788 7 -0.19640350341796875 3 Oxidation (M) _DLHHVLM(Oxidation (M))SQM_ ENST00000505295.1_1_5:80540896-80542784:-|nuORF 8.444304893310646 0.4306066564229251 2 [YN]A[PS]VY 7 -1 51.783 0 0 4.2253 0 0 0 428.19596276207534 428.19596276207534 37.80349141202521 0 0 0 0 1.579689690656103 2 0 0 [YN]A[PS]VY 4.2253 - 104 + NaN NaN 147077.5 NaN 12567 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16047 69.321 NaN 244090 35 0 17439 0.261 + 26440 STKSRKLDKKP 11 62 644.389280772833 NaN 0 644.3116455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _STKSRKLDKKP_ REV__ENSG00000183035|ENST00000329312|CYLC1 0.9622753412299311 0.33939044544643376 2 YY{M(Oxidation (M))|F}EAR 6 -1 16.208 0 0 1.2596 0 0 131.25062387848658 323.10407434635005 454.3546982248366 0 0 0 0 0 0 0 0 0 YY{M(Oxidation (M))|F}EAR 1.2596 - 216 + NaN NaN 140066.7 NaN 12568 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16048 69.325 NaN 307060 35 0 21315 0.262 -1 FFDAELSQM 9 73 552.2393322777056 1102.464111622211 2 552.239013671875 MULTI HCD FTMS 0 0 0 16043 63690.9296875 0.6264961959235215 2 -0.0656280517578125 5 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 38.175570920033316 0.07371992880350783 2 E{I|L}SQ{M(Oxidation (M))|F} 5 -1 43.805 0 0 3.9734 0 0 480.1993885724625 0 480.1993885724625 0 -0.29942813455265593 -0.29942813455265593 0 0 1 0 0.6382104921644451 0 E{I|L}SQ{M(Oxidation (M))|F} 3.9734 + + 451 NaN NaN 144049.5 NaN 12569 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16049 69.328 NaN 169280 35 0 26430 0.261 + 10083 IFFENHPYF 9 59 607.2872616918412 1212.5599704504823 2 607.28857421875 MULTI HCD FTMS 0 0 0 16043 50481.58203125 0.02131964691127675 54 -1.3495101928710938 6 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 17.11289562659939 0.2125047172822487 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 23.672 0 0 1.9522 0 0 787.36528212715 0 787.36528212715 0 8.967137774837608 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.9522 + + 28 NaN NaN 119393 NaN 12570 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16050 69.331 NaN 182090 35 0 22524 0.262 + 1212 AYLLTLGKF 9 60 513.3051117632757 1024.5956705933513 2 513.305908203125 MULTI HCD FTMS 0 0 0 16043 70829.3515625 0.49614582472554025 2 -0.0656280517578125 7 Unmodified _AYLLTLGKF_ ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2 51.629811660486645 0.02929079705179888 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}T{I|L}GK{M(Oxidation (M))|F} 9 0 + 79.179 0 0 7.7278 7.7278 96.798 0 0 0 22.632192780232785 67.49622901658924 22.632192780232785 79.17866666451346 0 2.3807196863200843 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}T{I|L}GK{M(Oxidation (M))|F} 7.7278 + + 97 NaN NaN 122546.7 NaN 12571 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16051 69.335 NaN 293190 35 0 53560 0.261 + 25493 SFFERDYF 8 56 555.7468594641095 1109.479165995019 2 555.7474365234375 MULTI HCD FTMS 0 0 0 16043 36177.6484375 0.26656208892381594 -1 0.02618408203125 8 Unmodified _SFFERDYF_ REV__ENSG00000119771|ENST00000486442|KLHL29;REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF;REV__nc|ENSG00000119771|Q96CT2-2|KLHL29 8.593279151180031 0.5292430274356741 2 C{I|L} 2 -1 19.196 0 0 1.7302 0 0 875.3791099107044 0 875.3791099107044 0 4.59183145787911 0 0 0 0.4247425010840047 0 0 0 C{I|L} 1.7302 - 19 NaN NaN 127653.4 NaN 12572 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16052 69.338 NaN 208910 35 0 25323 0.261 + 16186 LPVKVVVDVL 10 65 540.8552520773669 1079.6959512215337 2 541.2698974609375 MULTI HCD FTMS 0 0 0 16043 16946.2734375 0.20923793383420902 -3 0.080718994140625 9 Unmodified _LPVKVVVDVL_ ENSG00000062725|ENST00000083182|APPBP2 12.240655878213236 0.39661705172222156 2 VDV{I|L} 4 6 36.938 0 0 3.4212 0 0 635.438280174025 0 635.438280174025 0 22.95880017344075 0 0 0 0.5 0 0 0 + VDV{I|L} 3.4212 + + 33 NaN NaN 129124.2 NaN 12573 3477 16043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16054 69.343 NaN 1850600 35 0 263790 0.327 + 24742 RYLWATVTI 9 109 561.8190903639276 1121.623627794655 2 561.819091796875 MULTI HCD FTMS 0 0 0 16053 1080666.75 0.8869469030180267 -2 0.0590667724609375 1 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 72.96794272382148 0.008127836904478181 2 STADATVT{I|L} 9 4 87.617 0 0 7.8117 0 0 244.17846877265782 0 244.17846877265782 0 46.308422131034845 0 0 0 0.5 0 2.7658715643802765 0 STADATVT{I|L} 7.8117 - 7733 NaN NaN 369413.8 NaN 12574 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16055 69.347 NaN 236040 35 0 29244 0.261 + 15843 LPIVLVGITV 10 61 512.3441460422625 1022.6737391513251 2 512.3443603515625 MULTI HCD FTMS 0 0 0 16053 153481.125 1 0 0 2 Unmodified _LPIVLVGITV_ ENSG00000126903|ENST00000651600|SLC10A3;nc|ENSG00000126903|P09131-2|SLC10A3 46.020951573049366 0.09315764076686055 2 {I|L}P{I|L}V[R{I|L}]S 7 5 76.771 0 0 7.5069 0 0 0 241.15546594791252 241.15546594791252 62.166535417100945 0 0 0 0 1.6549471895720984 2 0.8494850021680094 0 {I|L}P{I|L}V[R{I|L}]S 7.5069 - 128 + NaN NaN 128772.9 NaN 12575 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16056 69.351 NaN 296700 35 0 71976 0.261 + 32139 VYSKDNPNLL 10 57 581.8085116244007 1161.6024703156013 2 581.8084716796875 MULTI HCD FTMS 0 0 0 16053 183815.40625 1 0 0 3 Unmodified _VYSKDNPNLL_ ENSG00000174231|ENST00000304992|PRPF8 11.494710602746466 0.4035943721457025 2 {I|L}N{I|L}{I|L} 4 7 41.938 0 0 3.6104 0 0 690.29594618965 0 690.29594618965 0 37.95880017344075 0 0 0 1 0 0 0 {I|L}N{I|L}{I|L} 3.6104 - 54 NaN NaN 135296.2 NaN 12576 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16057 69.354 NaN 328530 35 0 23084 0.261 + 22729 QYEEQFVTL 9 68 578.7794164495135 1155.544279965827 2 578.7782592773438 MULTI HCD FTMS 0 0 0 16053 170141.671875 0.8038046618316639 4 -0.10772705078125 4 Unmodified _QYEEQFVTL_ ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF 31.26834338654808 0.10542797264966089 2 {M(Oxidation (M))|F}VT{I|L} 4 5 39.412 0 0 3.4107 0 0 677.2651234357437 0 677.2651234357437 0 28.44335023848103 0 0 0 1.1989700043360187 0 0 0 + {M(Oxidation (M))|F}VT{I|L} 3.4107 + + 74 NaN NaN 140904.1 NaN 12577 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16058 69.358 NaN 153250 35 0 10408 0.261 -1 MPQLMLVGCL 10 54 589.2929245667173 1176.5712962002344 2 589.2919921875 MULTI HCD FTMS 0 0 0 16053 60626.58203125 0.0918116562835441 13 -0.36675262451171875 5 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PQLMLVGC(Carbamidomethyl (C))L_ ENST00000267549.4_1_14:88471482-88476993:+|nuORF 5.731851221503515 0.44496410492002586 2 {M(Oxidation (M))|F}HAE{I|L} 5 -1 22.396 0 0 1.9035 0 0 561.2795277326187 0 561.2795277326187 0 4.515449934959715 0 0 0 0 0 0 0 {M(Oxidation (M))|F}HAE{I|L} 1.9035 - 53 NaN NaN 118177.8 NaN 12578 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16059 69.361 NaN 150480 35 0 24095 0.264 -1 NYTICQCDHL 10 50 422.84671891260007 1265.5183273380003 3 422.84649658203125 MULTI HCD FTMS 0 0 0 16053 176526.328125 0.18058460597507792 8 -0.222442626953125 6 Carbamidomethyl (C) _NYTIC(Carbamidomethyl (C))QCDHL_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 3.5870582119611467 0.4563168352879256 2 G{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.657 0 0 1043.417907271397 0 1043.417907271397 0 1.365006360318688 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 1.657 - 9 + NaN NaN 104415.8 NaN 12579 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16060 69.364 NaN 267220 35 0 33757 0.261 + 35205 YVLHFSSSHL 10 59 595.3019091623448 NaN 0 595.3223266601562 PEAK HCD FTMS 0 0 0 16053 20149.20703125 0.6301373226661193 -2 0.0590667724609375 7 Unmodified _YVLHFSSSHL_ ENST00000503074.1_1_5:35659153-35697983:+|nuORF 10.823927491677226 0.33092050725491123 2 NV 2 9 7.9588 0 0 0.6696 0 0 165.03923141178194 807.4152926080686 972.4545240198506 0 0 0 0 0 0 0 0 0 NV 0.6696 - 12 + NaN NaN 130308 NaN 12580 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16061 69.368 NaN 316130 35 0 61198 0.261 + 33718 YLCSGGMMNLI 11 57 601.2749803897335 1200.535407846267 2 601.2743530273438 MULTI HCD FTMS 0 0 0 16053 229405.84375 0.7241579663485437 -2 0.0590667724609375 8 Unmodified _YLCSGGMMNLI_ ENST00000604849.1_2_X:53172048-53172363:+|nuORF 15.248480904072842 0.3242218977034194 2 {I|L}N{I|L}{I|L} 4 7 45.745 0 0 3.8104 0 0 729.2296620099625 0 729.2296620099625 0 38.667053245199625 0 0 0 1.3807196863200843 0 0 0 {I|L}N{I|L}{I|L} 3.8104 - 61 NaN NaN 136899 NaN 12581 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16062 69.371 NaN 126660 35 0 9758 0.261 + 27129 SYMGHFDLL 9 61 541.7526778660186 1081.4908027988372 2 541.7550659179688 MULTI HCD FTMS 0 0 0 16053 61933.0390625 0.8386872794624144 3 -0.08156585693359375 9 Unmodified _SYMGHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 11.640296217721598 0.25978676193971967 2 {I|L}{I|L} 2 7 20.133 0 0 1.8616 0 0 837.3067494123062 0 837.3067494123062 0 4.559771852360797 0 0 0 0.3054621874040891 0 0 0 + {I|L}{I|L} 1.8616 + + 21 NaN NaN 103547.4 NaN 12582 3478 16053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16064 69.376 NaN 15395000 35 0 3868100 0.327 + 24433 RYLDEINLL 9 110 574.8190799158277 1147.6236068984554 2 574.81982421875 MULTI HCD FTMS 0 0 0 16063 9366786 0.5464137996933199 1 -0.026123046875 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 114.18643581695662 0.002258955990713129 2 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 95.959 0 0 8.3615 8.3615 90.797 0 0 0 7.646905627783553 16.478174818886373 7.646905627783553 6.817496819840656 0 2.2302046884880937 1.0969100130080565 1.055462187404089 0.6549471895720984 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[YR]{I|L}DE{I|L}N{I|L}{I|L};[VP]VHDE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[R{I|L}]YDE{I|L}N{I|L}{I|L};[Y{I|L}]DR{I|L}EN{I|L}{I|L};[YR]{I|L}D{I|L}EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}N{I|L}{I|L} 8.3615;7.7675;7.7291;7.6952;7.6097;7.5591;7.2852;7.135;7.1011;7.0356 -;-;-;+;-;-;-;-;-;- + 7648 NaN NaN 786798.6 NaN 12583 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16065 69.38 NaN 1102000 35 0 70964 0.261 + 19133 NFSSSNFAKQM 11 107 630.7878241196413 1259.5610953060825 2 630.787841796875 MULTI HCD FTMS 0 0 0 16063 903167.25 0.23517743527129353 9 -0.2421112060546875 2 Unmodified _NFSSSNFAKQM_ REV__ENSG00000100401|ENST00000356244|RANGAP1 38.61474834105838 0.1458715177421877 2 YNAWMYT 7 -1 86.975 0 0 6.9052 0 0 0 327.14484583072505 327.14484583072505 55.15231074997523 0 0 0 0 2.274227503252014 1.6989700043360187 1.079689690656103 0 YNAWMYT 6.9052 - 9258 + NaN NaN 262803.2 NaN 12584 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16066 69.384 NaN 1219500 35 0 136690 0.262 + 1389 AYPYNFSNL 9 87 544.7562201557528 1087.4978873783054 2 544.7564086914062 MULTI HCD FTMS 0 0 0 16063 668779.9375 0.6750675163472584 1 -0.026123046875 3 Unmodified _AYPYNFSNL_ ENSG00000174282|ENST00000380599|ZBTB4 189.77610602135977 4.071947121966932E-13 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYN{M(Oxidation (M))|F}SN{I|L} 9 0 + 96.952 0 0 8.9152 8.9152 93.253 0 0 0 12.019747162287942 12.019747162287942 12.019747162287942 9.208187539523749 0 2.25 1.6989700043360187 0.6307196863200843 1.5114393726401687 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYN{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYN{M(Oxidation (M))|F}SGG{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AYN{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYGG{M(Oxidation (M))|F}SN{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AYN{M(Oxidation (M))|F}SGG{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PYGG{M(Oxidation (M))|F}SGG{I|L};YY[PA]N{M(Oxidation (M))|F}SN{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AYGG{M(Oxidation (M))|F}SN{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L} 8.9152;8.0684;7.4888;7.0287;6.6421;6.2045;5.8359;5.6077;5.6023;5.3577 +;-;-;-;-;-;-;-;-;- + 1544 NaN NaN 276527.6 NaN 12585 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16067 69.387 NaN 229950 35 0 46819 0.263 + -1 EDVDQCGKEDS 11 51 427.83475019449213 1280.4824211836765 3 427.8346252441406 MULTI HCD FTMS 0 0 0 16063 106717.1171875 0.07174217174838705 9 -0.2421112060546875 4 Carbamidomethyl (C) _EDVDQC(Carbamidomethyl (C))GKEDS_ REV__ENSG00000119681|ENST00000261978|LTBP2 0.925533008218175 0.41486159313925264 2 D 1 -1 4.6041 0 0 0.35956 0 0 557.1970340760578 605.2334688775999 1162.4305029536577 0 0 0 0 0 0 0 0 0 D 0.35956 + + 19 + NaN NaN 130328.9 NaN 12586 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16068 69.39 NaN 286070 35 0 37278 0.261 + -1 TMNGYKTANQM 11 65 637.777827919255 1273.5411029053098 2 637.7766723632812 MULTI HCD FTMS 0 0 0 16063 141372.4375 0.2528297719494479 6 -0.1602020263671875 5 Oxidation (M) _TM(Oxidation (M))NGYKTANQM_ REV__ENSG00000019582|ENST00000009530|CD74;REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF;REV__ENST00000523813.1_1_5:149785162-149785881:-|nuORF;REV__ENST00000523836.5_1_5:149785806-149792312:-|nuORF;REV__nc|ENSG00000019582|P04233-2|CD74;REV__nc|ENSG00000019582|P04233-3|CD74;REV__nc|ENSG00000019582|P04233-4|CD74;REV__nc|ENSG00000019582|P04233-5|CD74 17.44264345198275 0.3051040874848456 2 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}AE 10 -1 47.316 0 0 3.7153 0 0 0 159.0326027571729 159.0326027571729 20.66061246681059 0 0 0 0 1.7614393726401687 1.5228787452803376 0.6861818737241735 0.3252574989159953 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}AE 3.7153 - 841 NaN NaN 134860.4 NaN 12587 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16069 69.394 NaN 152580 35 0 15250 0.264 + 18184 MPDLDLHL 8 51 477.24170706683793 952.4688612004759 2 477.2415466308594 MULTI HCD FTMS 0 0 0 16063 50655.12890625 0.23094397554133766 6 -0.1602020263671875 6 Unmodified _MPDLDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 24.67388899826682 0.4122521268485776 2 MPD{NN|[MP]|[D{I|L}]|[EV]}{I|L}H{I|L} 8 0 + 46.86 0 0 4.9198 4.9198 85.669 0 0 0 32.880325230808154 5.177287669604311 5.177287669604311 8.45098040014257 0 0.3494850021680094 1.6989700043360187 0 0 + + MPD{NN|[MP]|[D{I|L}]|[EV]}{I|L}H{I|L};MPD[{I|L}V]EH{I|L} 4.9198;4.0325 +;- + 34 + NaN NaN 116354.4 NaN 12588 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16070 69.397 NaN 238450 35 0 26864 0.261 + -1 NYGIGRCMPVT 11 61 409.52620815082435 1225.5567950526731 3 409.5254821777344 MULTI HCD FTMS 0 0 0 16063 57862.81640625 0.15350882774564864 9 -0.2421112060546875 7 Oxidation (M) _NYGIGRCM(Oxidation (M))PVT_ REV__ENSG00000163251|ENST00000295417|FZD5 7.0370850670814 0.388058401935362 2 [YN]A[WP]Y 6 -1 37.72 0 0 3.0778 0 0 0 428.1950111389844 428.1950111389844 32.235834254131106 0 0 0 0 0.805462187404089 2 0 0 [YN]A[WP]Y 3.0778 - 25 + NaN NaN 121702 NaN 12589 3479 16063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16072 69.402 NaN 12783000 35 0 1451500 0.327 + 19816 NYAWVYYHL 9 91 614.7931119449629 1227.5716709567257 2 614.7931518554688 MULTI HCD FTMS 0 0 0 16071 7603959.5 0.11970024499956017 10 -0.271728515625 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 123.2 0 0 10.036 10.036 96.864 0 0 0 27.88241865052136 16.478174818886373 16.478174818886373 18.278324880759484 0 2.8494850021680094 1.6989700043360187 0 2.610924374808178 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};[YN]WAVW[YN]{I|L};{[WN]|[YH]}YAVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};[YN][YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YH{I|L} 10.036;8.5469;7.7645;7.2621;5.945;5.7731;5.757;5.3902;5.1949;5.0569 +;-;+;-;-;-;-;-;-;- + 3589 NaN NaN 541247.2 NaN 12590 3480 16071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16073 69.406 NaN 2209500 35 0 145190 0.261 + -1 TPSWHSTPAVC 11 127 621.7823961721873 1241.5502394111745 2 621.7826538085938 MULTI HCD FTMS 0 0 0 16071 720179.5 0.13272543647952437 10 -0.271728515625 2 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 87.307 0 0 7.0321 7.0321 92.273 0 0 0 12.140632508768391 25.24172362806273 12.140632508768391 13.868065937470263 0 2.274227503252014 1.5228787452803376 1.2059771852360797 0.9194451763165201 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}DA;[YN]APCVGERAY;[YN]APCVGERYA;[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NW[{M(Oxidation (M))|F}E]YH{I|L};[YN]APCRE{I|L}NY;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[{M(Oxidation (M))|F}V]ASDA;[YN]AW[{M(Oxidation (M))|F}E][WQ]V;[YN]APCVR{[DA]|[EG]}AY 7.0321;5.9151;5.7989;5.4728;5.3041;5.2851;5.2408;5.1671;5.1567;5.1111 -;-;-;-;-;-;-;-;-;- 38303 NaN NaN 427008 NaN 12591 3480 16071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16074 69.41 NaN 2218600 35 0 219240 0.262 + 26770 SYGDILHVI 9 106 508.77415865977554 1015.5337643863511 2 508.77423095703125 MULTI HCD FTMS 0 0 0 16071 387307.21875 0.4362805565120566 2 -0.048858642578125 3 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 96.28474662873226 0.004361282420133734 2 SYGD{I|L}{I|L}HV{I|L} 9 0 + 66.383 0 0 6.5368 6.5368 92.243 0 0 0 16.580332862534036 6.7775854851477675 6.7775854851477675 18.962729763752876 0 2.427825934852436 2 0 0 + + SYGD{I|L}{I|L}HV{I|L};[Y{I|L}]DVGTHV{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GD{I|L}{I|L}HV{I|L};[Y{I|L}]D[SG]{I|L}HV{I|L};{NN|[MP]|[D{I|L}]|[EV]}YVGTHV{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y[SG]{I|L}HV{I|L};[Y{I|L}]DVG{I|L}[HS]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YK]{I|L}HV{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[VP][PS]YN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YVG{I|L}[HS]{I|L} 6.5368;4.6695;4.5854;4.3279;3.6427;3.3011;2.9057;2.1934;2.0097;1.8789 +;-;+;-;-;-;-;-;-;- + 1639 + NaN NaN 424247.7 NaN 12592 3480 16071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16075 69.413 NaN 1408300 35 0 210960 0.261 + 4432 EYGKFFVTL 9 86 552.2923591930563 1102.5701654529125 2 552.29248046875 MULTI HCD FTMS 0 0 0 16071 542495.9375 0.5002445338077931 -3 0.0917510986328125 4 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 89.40071534611396 0.0045416704840156395 2 [YE]GK{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L} 9 0 + 65.057 0 0 5.9005 5.9005 92.79 0 0 0 22.516244656232686 18.90597973953868 18.90597973953868 44.933662338707535 0 1.3737125054200234 1.2218487496163564 0.9258337024346173 0 + + [YE]GK{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L};[KG][RH]{M(Oxidation (M))|F}[MN]T{I|L};[KG][RH]{M(Oxidation (M))|F}K[DC]{I|L} 5.9005;1.8251;1.0986 +;-;- + 922 + NaN NaN 305826 NaN 12593 3480 16071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16076 69.416 NaN 127550 35 0 3895.1 0.261 + -1 MELIKNKR 8 52 524.3023681640625 NaN 0 524.3023681640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))ELIKNKR_ REV__ENSG00000140287|ENST00000267845|HDC;REV__ENST00000558679.1_1_15:50546296-50557931:-|nuORF;REV__ENST00000558761.5_1_15:50545740-50557820:-|nuORF;REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF;REV__nc|ENSG00000140287|P19113-2|HDC 2.302733041254933 0.38822285293237185 2 D 1 -1 5.4846 0 0 0.52404 0 0 541.3814294430889 387.1682528131469 928.5496822562359 0 0 0 0 0 0 0 0 0 D 0.52404 - 3 + NaN NaN 112825.1 NaN 12594 3480 16071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16077 69.42 NaN 115610 35 0 12448 0.261 -1 LEEDDVVM 8 52 483.2112670073922 NaN 0 483.3829650878906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LEEDDVVM(Oxidation (M))_ ENSG00000104549|ENST00000265896|SQLE 2.8892196856762586 0.38822285293237185 2 N{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.98132 0 0 130.0884142864657 570.1905001275999 700.2789144140656 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 0.98132 - 16 + NaN NaN 115761.2 NaN 12595 3480 16071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16079 69.425 NaN 1209900 35 0 309950 0.327 + 7802 FYPPKVELF 9 60 570.3107063408479 1138.6068597484957 2 570.3108520507812 MULTI HCD FTMS 0 0 0 16078 480554.46875 0.3275843359495925 -5 0.14063262939453125 1 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 29.081581746732265 0.1154664336125038 2 {I|L}E{M(Oxidation (M))|F} 3 7 28.456 0 0 2.4992 0 0 731.4206874568283 0 731.4206874568283 0 7.201140738196017 0 0 0 0.9247425010840047 0 0 0 {I|L}E{M(Oxidation (M))|F} 2.4992 - 40 NaN NaN 272657.8 NaN 12596 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16080 69.429 NaN 386050 35 0 46909 0.261 + 2095 DFDQLLEAL 9 66 532.2689998259888 1062.5234467187774 2 532.2689819335938 MULTI HCD FTMS 0 0 0 16078 185534.40625 0.7045290706153483 1 -0.02616119384765625 2 Unmodified _DFDQLLEAL_ ENSG00000107719|ENST00000263563|PALD1 24.990960013464015 0.14443998892849796 2 {I|L}EA{I|L} 4 5 44.553 0 0 4.1931 0 0 618.2657337873062 0 618.2657337873062 0 14.68256871239447 0 0 0 1.5 0 0 0 + {I|L}EA{I|L} 4.1931 + + 288 NaN NaN 166183.5 NaN 12597 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16081 69.433 NaN 443510 35 0 23849 0.261 + 2928 DYSPYFKTI 9 87 567.279159143842 1132.5437653544839 2 567.2799072265625 MULTI HCD FTMS 0 0 0 16078 162896.40625 0.4577078068965711 16 -0.44170379638671875 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 57.24910588100465 0.021429789259086996 2 {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L} 9 0 + 65.278 0 0 5.7639 5.7639 90.83 0 0 0 17.926740567922437 16.478174818886373 16.478174818886373 17.926740567922437 0 2.110924374808178 2 0.5629529932484498 0 + + {[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}KT{I|L};{[YD]|[{M(Oxidation (M))|F}M]}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}PN 5.7639;4.181;3.7085;2.1257;0.90169 +;-;-;-;- + 584 NaN NaN 153105.2 NaN 12598 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16082 69.436 NaN 212380 35 0 39119 0.261 + 34167 YPDENGFDAF 10 46 587.7379705566718 1173.4613881801436 2 587.73828125 MULTI HCD FTMS 0 0 0 16078 141157.140625 0.412835087086907 -4 0.11444854736328125 4 Unmodified _YPDENGFDAF_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 36.506200033944 0.17572556831573002 2 DA{M(Oxidation (M))|F} 3 7 45.445 0 0 3.8728 0 0 822.3184571272124 0 822.3184571272124 0 41.95046257204389 0 0 0 1.5 0 0.4247425010840047 0 + DA{M(Oxidation (M))|F} 3.8728 + + 18 + NaN NaN 136596.2 NaN 12599 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16083 69.439 NaN 166430 35 0 29656 0.262 -1 LPDMEVVGL 9 42 494.7545429672116 987.4945330012232 2 494.7546081542969 MULTI HCD FTMS 0 0 0 16078 47885.21875 0.3976529469345217 1 -0.02616119384765625 5 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 15.847184025352803 0.2234401846867398 2 VVG{I|L} 4 -1 41.938 0 0 4.2469 0 0 601.2426624982437 0 601.2426624982437 0 19.262137858390815 0 0 0 1 0 0 0 VVG{I|L} 4.2469 + + 34 NaN NaN 116107.6 NaN 12600 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16084 69.443 NaN 356830 35 0 46670 0.261 + 1176 AYLESFYKF 9 73 584.2894496602338 1166.5643463872675 2 584.2896118164062 MULTI HCD FTMS 0 0 0 16078 138976.703125 0.006404020773748293 66 -1.664215087890625 6 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 99.75527289724121 0.004270341300239591 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 106.23 0 0 9.1066 9.1066 96.212 0 0 0 24.137342758552677 89.55192012318622 24.137342758552677 18.71137516260069 0 3.3494850021680094 1.6989700043360187 1.1549471895720984 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES[VP]NK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES[VP]GGK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EPWE{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES[VP]E{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Y{I|L}][SG]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9.1066;7.5026;6.717;6.4616;6.2499;6.2316;5.1703;4.8347;4.5008;4.2759 +;-;-;-;-;-;-;-;-;- + 566 NaN NaN 159786.8 NaN 12601 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16085 69.446 NaN 326720 35 0 57909 0.261 + -1 LYCPDNSKGG 10 75 555.7468594641095 1109.479165995019 2 555.745849609375 MULTI HCD FTMS 0 0 0 16078 34340.83984375 0.25302822044839296 3 -0.0819549560546875 7 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))PDNSKGG_ REV__ENSG00000103657|ENST00000443617|HERC1 9.38312468134398 0.42334543440173333 2 {I|L}{M(Oxidation (M))|F} 2 -1 24.157 0 0 2.1773 0 0 0 846.2994478815061 846.2994478815061 8.979400086720375 0 0 0 0 0 1.3979400086720375 0 0 {I|L}{M(Oxidation (M))|F} 2.1773 - 64 + NaN NaN 149610.5 NaN 12602 3481 16078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16087 69.451 NaN 689970 35 0 66627 0.327 + 10130 IFLNKTFQW 9 106 598.826977809547 1195.6394026858939 2 598.8269653320312 MULTI HCD FTMS 0 0 0 16086 212037.171875 0.6715825100450002 2 -0.05579376220703125 1 Unmodified _IFLNKTFQW_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 103.82355648334675 0.003950725192926219 2 {I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}QW 9 0 + 94.215 0 0 7.8798 7.8798 89.556 0 0 0 69.88061002235355 14.09256854528806 14.09256854528806 5.751349721325951 0 2.841129063296272 1 0.2742275032520141 1.024227503252014 + + {I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}NKT{M(Oxidation (M))|F}GAW;{I|L}{M(Oxidation (M))|F}{I|L}GGKT{M(Oxidation (M))|F}QW;{I|L}{M(Oxidation (M))|F}{I|L}GGKT{M(Oxidation (M))|F}GAW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{I|L}KT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{I|L}KT{M(Oxidation (M))|F}[AG]W;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{I|L}KT{M(Oxidation (M))|F}QW 7.8798;7.3988;7.1097;6.6323;5.1962;4.4703;4.4261;4.4261;3.7001;3.7001 +;-;-;-;+;-;-;-;-;- + 2468 + NaN NaN 204195.2 NaN 12603 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16088 69.455 NaN 467360 35 0 27551 0.261 + 2957 DYVEGLRVF 9 79 549.2850743294578 1096.5555957257154 2 549.285400390625 MULTI HCD FTMS 0 0 0 16086 187760.46875 0.1387485751814623 12 -0.330963134765625 2 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 53.40400417844725 0.026808823219830042 2 {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F} 9 0 + 80.512 0 0 7.3423 7.3423 92.984 0 0 0 8.313470692558127 63.06479076621045 8.313470692558127 14.660677999045717 0 3.242992819099939 1.5228787452803376 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VEG{I|L}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]RV{M(Oxidation (M))|F};[Y{I|L}]DDG{I|L}RV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[YD]|[{M(Oxidation (M))|F}M]}G{I|L}RV{M(Oxidation (M))|F} 7.3423;6.0053;4.4082;2.9687 +;-;-;- + 613 NaN NaN 158445 NaN 12604 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16089 69.459 NaN 363460 35 0 47750 0.261 + 35470 YYFAVKTLI 9 77 559.3181852602117 1116.6218175872234 2 559.3184814453125 MULTI HCD FTMS 0 0 0 16086 96686.9921875 0.5950030538778672 -1 0.02616119384765625 3 Unmodified _YYFAVKTLI_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 63.960520009940105 0.0120409805053046 2 YY{M(Oxidation (M))|F}AV[K{I|L}]T{I|L} 9 2 + 72.369 0 0 6.481 6.481 85.725 0 0 0 9.854771935914002 2.2134030500787816 2.2134030500787816 2.2134030500787816 0 1.6989700043360187 2 0.3494850021680094 0 YY{M(Oxidation (M))|F}AV[K{I|L}]T{I|L};YY{M(Oxidation (M))|F}AV[KT]{I|L}{I|L};YY{M(Oxidation (M))|F}AV[{I|L}T]K{I|L};YY{M(Oxidation (M))|F}AV{I|L}{I|L}[KT] 6.481;6.2828;5.1302;2.853 -;+;-;- + 236 + NaN NaN 138301.9 NaN 12605 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16090 69.462 NaN 505730 35 0 58752 0.261 + 25758 SLDSFFIKV 9 78 528.2927668360459 NaN 0 528.274169921875 PEAK HCD FTMS 0 0 0 16086 10779.5205078125 0.5317734039035347 1 -0.03285980224609375 4 Unmodified _SLDSFFIKV_ REV__ENSG00000276231|ENST00000619866|PIK3R6 8.745405648335112 0.25286782695573473 2 VK{M(Oxidation (M))|F}{M(Oxidation (M))|F}S 5 -1 25.79 0 0 2.4455 0 0 149.14267832728507 294.07236658267817 443.21504490996324 0 0 0 0 0 0 0 0.6861818737241735 0 VK{M(Oxidation (M))|F}{M(Oxidation (M))|F}S 2.4455 - 99 + NaN NaN 165633.6 NaN 12606 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16091 69.465 NaN 247010 35 0 41364 0.261 + 29575 VADPVEAVL 9 55 456.7555727363678 911.4965925395356 2 456.7557678222656 MULTI HCD FTMS 0 0 0 16086 69955.015625 0.0749929833121085 12 -0.330963134765625 5 Unmodified _VADPVEAVL_ ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;nc|ENSG00000137497|Q14980-2|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1 46.020951573049366 0.037705236580089195 2 EAV{I|L} 4 5 46.542 0 0 5.1061 0 0 481.25275917791527 0 481.25275917791527 0 31.057743964882718 0 0 0 1.610924374808178 0 0 0 + EAV{I|L} 5.1061 + + 80 NaN NaN 127449.9 NaN 12607 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16092 69.469 NaN 278710 35 0 38441 0.261 + 10084 IFFENHPYF 9 73 607.2872616918412 1212.5599704504823 2 607.2891235351562 MULTI HCD FTMS 0 0 0 16086 70293.40625 0.02968668059002639 59 -1.4743118286132812 6 Unmodified _IFFENHPYF_ ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 31.26834338654808 0.10542797264966089 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 4 5 30.165 0 0 2.4877 0 0 0 673.2725739238915 673.2725739238915 8.509562869230862 0 0 0 0 0.4247425010840047 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 2.4877 + + 104 + NaN NaN 135916.7 NaN 12608 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16093 69.472 NaN 198200 35 0 27240 0.261 -1 SYAASGMCLLF 11 59 618.2750961202875 1234.5356393073748 2 618.2742919921875 MULTI HCD FTMS 0 0 0 16086 102526.4140625 0.7131873827918744 -3 0.074981689453125 7 Carbamidomethyl (C),Oxidation (M) _SYAASGM(Oxidation (M))C(Carbamidomethyl (C))LLF_ ENSG00000132164|ENST00000254488|SLC6A11 22.736283301280096 0.2589804299186601 2 T{I|L}{M(Oxidation (M))|F} 3 -1 43.5 0 0 3.5236 0 0 855.3249823516762 0 855.3249823516762 0 24.019089853900223 0 0 0 1 0 0.7302046884880937 0 T{I|L}{M(Oxidation (M))|F} 3.5236 - 40 NaN NaN 118944.2 NaN 12609 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16094 69.475 NaN 275170 35 0 96171 0.264 + 10857 IVNANIFRLLF 11 41 440.59939643404897 1318.776359902347 3 440.5993347167969 MULTI HCD FTMS 0 0 0 16086 98766 0.17334201365560217 14 -0.3960113525390625 8 Unmodified _IVNANIFRLLF_ REV__ENSG00000169297|ENST00000378970|NR0B1 4.406150317652783 0.39959678800402487 2 {I|L}{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.2342 0 0 1040.613394051097 0 1040.613394051097 0 29.463950151760656 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.2342 + + 10 NaN NaN 132901.3 NaN 12610 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16095 69.479 NaN 279600 35 0 57926 0.261 + 30725 VPILSEEEL 9 68 514.7792524491534 1027.5439519651068 2 514.7791748046875 MULTI HCD FTMS 0 0 0 16086 83649.5390625 0.7659646477667779 2 -0.05579376220703125 9 Unmodified _VPILSEEEL_ ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1 46.020951573049366 0.037705236580089195 2 [{I|L}P]V{I|L}{[ES]|[DT]|[{I|L}C]}EE{I|L} 9 2 + 56.559 0 0 5.5042 5.5042 92.463 0 0 0 12.508225663538965 41.95442085888853 12.508225663538965 56.55851462865041 0 1.6549471895720984 0.958607314841775 0 0 [{I|L}P]V{I|L}{[ES]|[DT]|[{I|L}C]}EE{I|L} 5.5042 - 93 NaN NaN 129590.3 NaN 12611 3482 16086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16097 69.484 NaN 395600 35 0 56951 0.327 + 26948 SYLHEVFEF 9 63 585.7766112560925 1169.5386695789848 2 585.7771606445312 MULTI HCD FTMS 0 0 0 16096 189635.21875 0.6247044961064107 -2 0.05902099609375 1 Unmodified _SYLHEVFEF_ ENSG00000064313|ENST00000378164|TAF2 64.23631603340823 0.01165516075559909 2 {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3 6 46.995 0 0 4.0182 0 0 728.3499728818235 0 728.3499728818235 0 35.28782221775522 0 0 0 1.5 0 0.8807196863200843 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.0182 + + 362 + NaN NaN 159891.1 NaN 12612 3483 16096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16098 69.488 NaN 287060 35 0 53653 0.261 -1 CDCDDNHMC 9 49 593.1577805748777 NaN 0 593.1580810546875 PEAK HCD FTMS 0 0 0 16096 110964.6953125 0.7226123768425915 16 -0.44500732421875 2 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))DC(Carbamidomethyl (C))DDNHM(Oxidation (M))C_ ENSG00000175065|ENST00000308128|DSG4;nc|ENSG00000175065|Q86SJ6-2|DSG4 0 0.29524684227089293 2 P{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.79912 0 0 165.77214941517633 771.3793305857687 937.151480000945 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 0.79912 - 4 + NaN NaN 131105.2 NaN 12613 3483 16096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16099 69.492 NaN 123400 35 0 25884 0.264 + 20475 PAYPVPGAL 9 47 442.7474924604311 883.4804319876622 2 442.7474670410156 MULTI HCD FTMS 0 0 0 16096 107274.125 0.8888625351276792 1 -0.0229339599609375 3 Unmodified _PAYPVPGAL_ ENST00000541676.5_2_16:84213598-84214742:-|nuORF 20.871210003555333 0.18003371494288972 2 A{I|L} 2 7 29.776 0 0 3.3703 0 0 681.3481348993321 0 681.3481348993321 0 15.172203223519531 0 0 0 0.8807196863200843 0 0 0 + A{I|L} 3.3703 + + 12 NaN NaN 109923.3 NaN 12614 3483 16096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16100 69.495 NaN 239940 35 0 22181 0.261 + 937 AYDVLFHQW 9 61 589.7845040724487 1177.5544552116974 2 589.78369140625 MULTI HCD FTMS 0 0 0 16096 86215.5234375 0.8759175412941206 1 -0.0229339599609375 4 Unmodified _AYDVLFHQW_ ENSG00000179832|ENST00000326134|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-2|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1 72.96794272382148 0.008127836904478181 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}{M(Oxidation (M))|F}HQW 9 0 + 97.885 0 0 8.3126 8.3126 94.155 0 0 0 6.187514591492601 6.187514591492601 6.187514591492601 12.703037561203843 0 3.1237125054200234 1.6989700043360187 0 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}{M(Oxidation (M))|F}HQW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}{M(Oxidation (M))|F}H[AG]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}{M(Oxidation (M))|F}H{[CP]|[EA]}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}{M(Oxidation (M))|F}HQ[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}{M(Oxidation (M))|F}H[AG]{[DA]|[EG]};{[YD]|[{M(Oxidation (M))|F}M]}AV{I|L}{M(Oxidation (M))|F}HQW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}Q{[{M(Oxidation (M))|F}H]|[RQ]}W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}Q[VG]{[CP]|[EA]}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV[PA]{I|L}V{[C(Carbamidomethyl (C))G]|[NC]}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DV{I|L}[PA]V{[C(Carbamidomethyl (C))G]|[NC]}N 8.3126;7.2338;7.0156;7.0051;6.2269;5.7702;5.366;5.258;5.1141;5.1141 +;-;-;-;-;-;-;-;-;- + 678 + NaN NaN 140815.5 NaN 12615 3483 16096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16101 69.498 NaN 148480 35 0 23775 0.262 -1 VPMEDINL 8 45 473.73115921228344 945.4477654913669 2 473.7312316894531 MULTI HCD FTMS 0 0 0 16096 77433.5625 0.35371870695391666 -5 0.14058685302734375 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 11.640296217721598 0.50814828952472 2 {I|L}N{I|L} 3 -1 31.198 0 0 3.2998 0 0 587.226610210978 0 587.226610210978 0 22.245462655597095 0 0 0 0.5 0 0 0 {I|L}N{I|L} 3.2998 + + 18 NaN NaN 122795.6 NaN 12616 3483 16096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16102 69.502 NaN 267530 35 0 20108 0.261 + -1 VYCLLICHL 9 62 595.8064426272462 1189.5983323212922 2 595.8038940429688 MULTI HCD FTMS 0 0 0 16096 19812.412109375 0.0992372996628343 13 -0.36315155029296875 6 2 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))LLIC(Carbamidomethyl (C))HL_ REV__ENST00000535924.6_1_1:85784897-85784963:-|nuORF 9.347437153973935 0.2795965555214564 2 {I|L}{I|L} 2 -1 18.583 0 0 1.5622 0 0 945.4188099591812 0 945.4188099591812 0 11.091896990114234 0 0 0 0 0 0 0 {I|L}{I|L} 1.5622 + + 26 NaN NaN 138392.4 NaN 12617 3483 16096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16104 69.506 NaN 999410 35 0 149780 0.327 + 24743 RYLWATVTI 9 84 561.8190903639276 1121.623627794655 2 561.8192138671875 MULTI HCD FTMS 0 0 0 16103 470536.96875 0.386188718389182 4 -0.11133575439453125 1 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 63.960520009940105 0.0120409805053046 2 VTWATVT{I|L} 8 3 77.926 0 0 6.9476 0 0 232.14212233711095 0 232.14212233711095 0 27.814797377188754 0 0 0 0.4247425010840047 0 1.9802046884880937 0 VTWATVT{I|L} 6.9476 - 2165 NaN NaN 248258.3 NaN 12618 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16105 69.511 NaN 615250 35 0 91202 0.261 + 1509 AYVEWFNRL 9 84 599.3066412527105 1196.598729572221 2 599.3068237304688 MULTI HCD FTMS 0 0 0 16103 252283.359375 0.7805167610053103 -1 0.0229339599609375 2 Unmodified _AYVEWFNRL_ ENSG00000138670|ENST00000264400|RASGEF1B;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant 61.60191391372663 0.015340508911304802 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NR{I|L} 9 0 + 88.157 0 0 7.3673 7.3673 86.86 0 0 0 12.448500216800937 12.448500216800937 12.448500216800937 1.249387366082999 0 2.7059771852360797 1.5228787452803376 0 0.3807196863200844 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NGV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}GGR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}GGGV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW[RN]{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][C(Carbamidomethyl (C))S]NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][C(Carbamidomethyl (C))S]NGV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTW[NP]S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE[RV]{M(Oxidation (M))|F}QW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE[RV]{M(Oxidation (M))|F}[AG]W 7.3673;7.2629;6.5978;6.1789;5.8654;4.8645;4.7638;4.0896;4.0623;3.021 +;-;-;-;-;-;-;-;-;- + 1060 NaN NaN 199539 NaN 12619 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16106 69.514 NaN 211990 35 0 50407 0.261 + 5120 FEREEINIL 9 56 581.8085116244007 1161.6024703156013 2 581.807861328125 MULTI HCD FTMS 0 0 0 16103 78885.109375 0.42915395931346206 6 -0.16707611083984375 3 Unmodified _FEREEINIL_ tr|U7SU77|U7SU77_FUSNUPrecorrin-6xreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01049PE=4SV=1 16.149105407346934 0.22083165093524068 2 {I|L}N{I|L}{I|L} 4 5 41.938 0 0 3.6104 0 0 690.2934437482437 0 690.2934437482437 0 34.94850021680094 0 0 0 1 0 0 0 + {I|L}N{I|L}{I|L} 3.6104 + + 31 NaN NaN 135911.9 NaN 12620 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16107 69.518 NaN 267800 35 0 34835 0.261 -1 SYMFVDENTF 10 63 634.7604288107735 1267.506304688347 2 634.7596435546875 MULTI HCD FTMS 0 0 0 16103 114660.21875 0.5467556376728567 -5 0.13077545166015625 4 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 30.7034409873982 0.22608124881558994 2 NEDV{M(Oxidation (M))|F}EC{M(Oxidation (M))|F} 8 -1 34.078 0 0 2.6886 0 0 266.1271229474625 0 266.1271229474625 0 22.624562618571247 0 0 0 1.242992819099939 0 0.3054621874040891 0 NEDV{M(Oxidation (M))|F}EC{M(Oxidation (M))|F} 2.6886 - 122 NaN NaN 142628.4 NaN 12621 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16108 69.521 NaN 236290 35 0 14003 0.261 + 16387 LSGFRVDFTL 10 66 577.8131872120966 1153.6118214909932 2 577.813720703125 MULTI HCD FTMS 0 0 0 16103 33249.30078125 0.5263111650184676 1 -0.02942657470703125 5 Unmodified _LSGFRVDFTL_ ENSG00000124900|ENST00000449290|TRIM51;nc|ENSG00000124900|Q9BSJ1-2|TRIM51 5.296884461304476 0.4472664531305844 2 V 1 9 10.485 0 0 0.90885 0 0 133.07388364253558 918.4479711840772 1051.5218548266128 0 0 0 0 0 0.5 0 0 0 + V 0.90885 + + 87 + NaN NaN 130979.1 NaN 12622 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16109 69.524 NaN 183770 35 0 13989 0.261 + 15844 LPIVLVGITV 10 71 512.3441460422625 1022.6737391513251 2 512.343994140625 MULTI HCD FTMS 0 0 0 16103 27182.666015625 0.17710754997153558 6 -0.16707611083984375 6 Unmodified _LPIVLVGITV_ ENSG00000126903|ENST00000651600|SLC10A3;nc|ENSG00000126903|P09131-2|SLC10A3 37.97399986684836 0.1629881689457739 2 {I|L}P{I|L}V[R{I|L}]S 7 5 62.317 0 0 6.0935 0 0 0 241.15581690006096 241.15581690006096 48.82174970894985 0 0 0 0 1.1237125054200234 1.5228787452803376 0.7134679910804405 0 {I|L}P{I|L}V[R{I|L}]S 6.0935 - 94 + NaN NaN 124398.3 NaN 12623 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16110 69.528 NaN 220720 35 0 14777 0.261 + 16187 LPVKVVVDVL 10 65 540.8552520773669 1079.6959512215337 2 540.85546875 MULTI HCD FTMS 0 0 0 16103 33802.1875 0.3928536568645744 4 -0.11133575439453125 7 Unmodified _LPVKVVVDVL_ ENSG00000062725|ENST00000083182|APPBP2 12.240655878213236 0.39661705172222156 2 VDV{I|L} 4 6 34.68 0 0 3.2121 0 0 635.4345570294937 0 635.4345570294937 0 20.07638152291939 0 0 0 0.4247425010840047 0 0 0 + VDV{I|L} 3.2121 + + 49 NaN NaN 122849.4 NaN 12624 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16111 69.531 NaN 199050 35 0 9266 0.261 + 12766 KYDEIFYNL 9 53 602.7982633049493 1203.5819736766985 2 602.7969360351562 MULTI HCD FTMS 0 0 0 16103 24076.42578125 0.5374908914851039 -2 0.05579376220703125 8 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 14.405379775768559 0.2358970535022398 2 P{M(Oxidation (M))|F}YN{I|L} 5 5 44.24 0 0 3.6757 0 0 551.2446766584 0 551.2446766584 0 38.75569708000178 0 0 0 1.3807196863200843 0 0 0 P{M(Oxidation (M))|F}YN{I|L} 3.6757 - 99 NaN NaN 117468.9 NaN 12625 3484 16103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16113 69.536 NaN 10041000 35 0 2367000 0.327 + 24434 RYLDEINLL 9 118 574.8190799158277 1147.6236068984554 2 574.8192749023438 MULTI HCD FTMS 0 0 0 16112 5434373.5 0.3170155347936513 7 -0.1967010498046875 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 114.18643581695662 0.002258955990713129 2 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 87.445 0 0 7.6197 7.6197 89.35 0 0 0 6.530899869919438 16.478174818886373 6.530899869919438 6.262874945799766 0 2 1 0.8539171939081174 0.7302046884880937 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[YR]{I|L}DE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};[VP]VHDE{I|L}N{I|L}{I|L};[YN]D{I|L}[KG]VN{I|L}{I|L};[YN]D[KG]V{I|L}N{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}N{I|L}{I|L};[YN]D[KG]{I|L}VN{I|L}{I|L} 7.6197;7.0739;7.0506;6.8173;6.6371;6.5704;6.456;6.3993;6.3376;6.2781 -;-;+;-;-;-;-;-;-;- + 10943 NaN NaN 785470.2 NaN 12626 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16114 69.54 NaN 904840 35 0 54775 0.261 -1 YNAPTDHGLCI 11 96 630.7878241196413 1259.5610953060825 2 630.7880249023438 MULTI HCD FTMS 0 0 0 16112 488898.09375 0.1273051030107097 15 -0.40879058837890625 2 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 39.94969957227396 0.1372740116928318 2 NYAWMYY 7 -1 78.237 0 0 6.2115 0 0 0 265.1299227350219 265.1299227350219 41.522817412394346 0 0 0 0 2.524227503252014 1.6989700043360187 0 0 NYAWMYY 6.2115 - 3531 + NaN NaN 228912.9 NaN 12627 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16115 69.544 NaN 429440 35 0 43870 0.262 + 1390 AYPYNFSNL 9 75 544.7562201557528 1087.4978873783054 2 544.75634765625 MULTI HCD FTMS 0 0 0 16112 294509.5 0.29727835055708873 7 -0.1967010498046875 3 Unmodified _AYPYNFSNL_ ENSG00000174282|ENST00000380599|ZBTB4 70.33199760932243 0.0089807860198535 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SN{I|L} 9 0 + 70.429 0 0 6.4762 6.4762 86.009 0 0 0 2.5578094971178444 2.5578094971178444 2.5578094971178444 3.0102999566398125 0 2.2302046884880937 1.6989700043360187 0 0.3054621874040891 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}S{I|L}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{M(Oxidation (M))|F}S{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[QV]|[N{I|L}]|[RA]|[KV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}S{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SGG{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}SN{I|L} 6.4762;6.1994;5.6295;5.3943;5.0718;3.1974;3.0027;2.9206;2.3506;2.0698 +;-;-;-;-;-;-;-;-;- + 284 NaN NaN 146253.2 NaN 12628 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16116 69.547 NaN 378220 35 0 53826 0.261 + 23609 RPISDFLTL 9 68 531.3035363195214 1060.5925197058427 2 531.3038330078125 MULTI HCD FTMS 0 0 0 16112 229936.234375 1 0 0 4 Unmodified _RPISDFLTL_ ENSG00000169018|ENST00000306917|FEM1B 36.506200033944 0.08138327636155518 2 {M(Oxidation (M))|F}{I|L}T{I|L} 4 5 44.68 0 0 4.2128 0 0 568.2954268473272 0 568.2954268473272 0 16.264100213633768 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + {M(Oxidation (M))|F}{I|L}T{I|L} 4.2128 + + 134 NaN NaN 147592.4 NaN 12629 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16117 69.551 NaN 196660 35 0 20319 0.261 + -1 NYAERAKEMM 10 65 637.777827919255 1273.5411029053098 2 638.2789306640625 MULTI HCD FTMS 0 0 0 16112 84654.7109375 0.22561456935275592 13 -0.35986328125 5 2 Oxidation (M) _NYAERAKEM(Oxidation (M))M(Oxidation (M))_ REV__ENSG00000101161|ENST00000266079|PRPF6;REV__nc|ENSG00000101161|O94906-2|PRPF6 8.155526934196011 0.43213520406898465 2 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}A 9 -1 43.069 0 0 3.3818 0 0 0 288.0665425369479 288.0665425369479 24.81939364284848 0 0 0 0 1.75 1.5228787452803376 0.7742275032520141 0 [YN]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}A 3.3818 - 340 NaN NaN 127992 NaN 12630 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16118 69.554 NaN 160330 35 0 14432 0.261 -1 KYMDVQFDF 9 50 604.7687558006563 1207.5229586681126 2 604.7672119140625 MULTI HCD FTMS 0 0 0 16112 66782.7734375 0.4704771844134927 10 -0.27465057373046875 6 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 22.65808497894818 0.16459551161911185 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 46.186 0 0 3.8248 0 0 666.3010121076187 0 666.3010121076187 0 39.22290038707452 0 0 0 1.4247425010840047 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.8248 - 73 NaN NaN 138893 NaN 12631 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16119 69.557 NaN 156910 35 0 22323 0.261 + -1 LFFMQLQQC 9 54 607.789709503838 NaN 0 607.789306640625 PEAK HCD FTMS 0 0 0 16112 73381.734375 1 0 0 7 Carbamidomethyl (C) _LFFMQLQQC(Carbamidomethyl (C))_ REV__ENSG00000198198|ENST00000634258|SZT2;REV__nc|ENSG00000198198|Q5T011-4|SZT2;REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.S1932Rfs*57|1|0.11|ENSG00000198198|chr1:43435262-43435262|T/-|frameshift_variant 5.230669730166228 0.26989974671959066 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3 -1 13.812 0 0 1.1382 0 0 114.09128219147313 673.2722262018186 787.3635083932918 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E 1.1382 - 9 + NaN NaN 121992.7 NaN 12632 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16120 69.561 NaN 108900 35 0 5230 0.261 -1 MYYFVSMLAM 10 54 644.2742409934716 NaN 0 644.3117065429688 PEAK HCD FTMS 0 0 0 16112 9973.08203125 0.47137680554025957 -2 0.05236053466796875 8 2 Oxidation (M) _MYYFVSM(Oxidation (M))LAM(Oxidation (M))_ OR51A2|p.L65V|1|0.11|ENSG00000205496|chr11:4955521-4955521|G/C|missense_variant 3.2813086475875832 0.33737594360511275 2 Y{M(Oxidation (M))|F} 2 -1 7.4743 0 0 0.58096 0 0 294.0819770047181 679.2911478119379 973.373124816656 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 0.58096 + + 6 + NaN NaN 120107.9 NaN 12633 3485 16112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16122 69.565 NaN 9778900 35 0 1005400 0.327 + 19817 NYAWVYYHL 9 112 614.7931119449629 1227.5716709567257 2 614.7933959960938 MULTI HCD FTMS 0 0 0 16121 5860482.5 0.09225472480036682 16 -0.41817474365234375 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 2 [YN]AWVYYH{I|L} 9 0 + 122.76 0 0 10 10 96.718 0 0 0 27.442190502882156 16.478174818886373 16.478174818886373 17.258177263343413 0 2.8494850021680094 1.6989700043360187 0 2.5669015600442577 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYAWVY{[QV]|[N{I|L}]|[RA]|[KV]}W;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L};{[WN]|[YH]}YAVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};NYA[{M(Oxidation (M))|F}V]VW[SG]W 10;8.5942;7.7645;7.1244;7.0122;6.5516;5.8758;5.8043;5.8015;5.7971 +;-;+;-;-;-;-;-;-;- + 5081 NaN NaN 749238.2 NaN 12634 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16123 69.57 NaN 2219500 35 0 620080 0.261 + 7803 FYPPKVELF 9 57 570.3107063408479 1138.6068597484957 2 570.3109130859375 MULTI HCD FTMS 0 0 0 16121 1466964.125 1 0 0 2 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 51.629811660486645 0.02929079705179888 2 {M(Oxidation (M))|F}EV{[HG]|PP}[YK]{I|L}{M(Oxidation (M))|F} 9 4 + 38.879 0 0 3.4146 3.4146 89.224 0 0 0 10.16765926813833 2.4291993164489583 2.4291993164489583 38.87903443073903 0 0.8807196863200843 0 0.5 0 {M(Oxidation (M))|F}EV{[HG]|PP}[YK]{I|L}{M(Oxidation (M))|F} 3.4146 - 122 + NaN NaN 430680 NaN 12635 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16124 69.573 NaN 1359900 35 0 210150 0.261 + 4433 EYGKFFVTL 9 82 552.2923591930563 1102.5701654529125 2 552.2925415039062 MULTI HCD FTMS 0 0 0 16121 953769.125 0.8794863856393242 3 -0.08861541748046875 3 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 99.75527289724121 0.004270341300239591 2 [YE]GK{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L} 9 0 + 67.761 0 0 6.1457 6.1457 92.823 0 0 0 24.128239132415374 22.09466946751766 22.09466946751766 35.98233951315555 0 1.3807196863200843 1.2218487496163564 1.1892404878284264 0 + + [YE]GK{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VT[YN]VT{I|L};[KG][RH]{M(Oxidation (M))|F}[MN]T{I|L};[KG][RH]{M(Oxidation (M))|F}K[DC]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}VTKG[YE]{I|L} 6.1457;2.8822;2.0263;1.2998;0.83678 +;-;-;-;- + 1019 + NaN NaN 301977.2 NaN 12636 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16125 69.577 NaN 1093400 35 0 69154 0.261 + -1 TPSWHSTPAVC 11 112 621.7823961721873 1241.5502394111745 2 621.7827758789062 MULTI HCD FTMS 0 0 0 16121 680699.9375 0.12544955294655355 16 -0.41817474365234375 4 Carbamidomethyl (C) _TPSWHSTPAVC(Carbamidomethyl (C))_ REV__ENST00000575411.2_1_17:4053207-4054269:+|nuORF 29.081581746732265 0.20726811077697932 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 -1 + 87.817 0 0 7.0732 7.0732 92.234 0 0 0 11.342306235151582 50.69763335231455 11.342306235151582 13.378778731580852 0 1.9247425010840047 1.5228787452803376 1.066901560044258 1.2249073637206092 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};NYAW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]AW[{M(Oxidation (M))|F}E]{[QV]|[N{I|L}]|[RA]|[KV]}W;[YN]AW[{M(Oxidation (M))|F}E][WQ]V;[YN]APCVY{[QV]|[N{I|L}]|[RA]|[KV]}{[DA]|[EG]};[YN]AWVYP[SG]W;[YN]APCVG{[QN]|[E{I|L}]|[KN]}NY;[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SPY;NYAE[W{M(Oxidation (M))|F}]YH{I|L} 7.0732;5.9956;5.6129;5.5634;5.4952;5.1973;5.0797;4.9221;4.9209;4.7541 -;-;-;-;-;-;-;-;-;- 10501 NaN NaN 254003.9 NaN 12637 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16126 69.58 NaN 580610 35 0 41679 0.261 -1 YNAPTDHGLCI 11 85 630.7878241196413 1259.5610953060825 2 630.7877197265625 MULTI HCD FTMS 0 0 0 16121 466513.78125 0.12147640937278036 16 -0.41817474365234375 5 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 2 YNAWMYT 7 -1 91.904 0 0 7.2965 0 0 0 327.1455172174438 327.1455172174438 69.15623546046113 0 0 0 0 2.2614393726401687 1.6989700043360187 1.110924374808178 0 YNAWMYT 7.2965 - 2291 + NaN NaN 194269.4 NaN 12638 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16127 69.583 NaN 490740 35 0 48011 0.263 + 26771 SYGDILHVI 9 80 508.77415865977554 1015.5337643863511 2 508.7742919921875 MULTI HCD FTMS 0 0 0 16121 183516.890625 0.20672181486737967 8 -0.21624755859375 6 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 71.13359017698441 0.008721403657255008 2 [Y{I|L}]DRE{I|L}N 7 7 41.796 0 0 4.1157 0 0 0 109.06541656824484 109.06541656824484 7.358863595431643 0 0 0 0 0 1.3979400086720375 0.3807196863200844 0.3252574989159953 [Y{I|L}]DRE{I|L}N 4.1157 - 581 NaN NaN 163269.7 NaN 12639 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16128 69.587 NaN 277420 35 0 57505 0.261 + 1381 AYPPNGVECY 10 62 556.7377032106291 NaN 0 556.75244140625 PEAK HCD FTMS 0 0 0 16121 19962.431640625 1 0 0 7 Unmodified _AYPPNGVECY_ ENSG00000124466|ENST00000244333|LYPD3 13.042465956692817 0.3290217458104555 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3 9 19.213 0 0 1.7287 0 0 89.01914406098031 596.2721651666624 685.2913092276427 0 0 0 0 0 0 0 1.2302046884880937 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E 1.7287 - 40 + NaN NaN 149063.1 NaN 12640 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16129 69.59 NaN 189470 35 0 40747 0.264 -1 NYTICQCDHL 10 56 422.84666979949617 1265.5181799986885 3 422.8468017578125 MULTI HCD FTMS 0 0 0 16121 86077.890625 0.65088882188448 1 -0.0328826904296875 8 Carbamidomethyl (C) _NYTIC(Carbamidomethyl (C))QCDHL_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 3.5870582119611467 0.4563168352879256 2 {I|L} 1 -1 19.604 0 0 1.5491 0 0 1134.4234514604057 0 1134.4234514604057 0 4.119543704721593 0 0 0 0.5 0 0 0 {I|L} 1.5491 + + 12 + NaN NaN 118036.9 NaN 12641 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16130 69.593 NaN 652020 35 0 40295 0.261 + 33500 YIDKVFLNF 9 87 579.8134013424109 1157.6122497516217 2 579.7966918945312 MULTI HCD FTMS 0 0 0 16121 25379.751953125 0.10997418764840604 15 -0.39876556396484375 9 Unmodified _YIDKVFLNF_ REV__ENSG00000198915|ENST00000395810|RASGEF1A;REV__nc|ENSG00000198915|Q8N9B8-2|RASGEF1A 20.453626601364224 0.18364154288633264 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K 8 -1 49.875 0 0 4.3084 0 0 0 162.0881298389335 162.0881298389335 8.411742928826271 0 0 0 0 0 2 0 0.7302046884880937 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K 4.3084 - 1549 NaN NaN 185930.9 NaN 12642 3486 16121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16132 69.598 NaN 452430 35 0 110980 0.327 + 34168 YPDENGFDAF 10 74 587.7379705566718 1173.4613881801436 2 587.73828125 MULTI HCD FTMS 0 0 0 16131 300922.34375 0.8800922251497146 2 -0.05573272705078125 1 Unmodified _YPDENGFDAF_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 70.33199760932243 0.017191949488996158 2 {M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 4 6 58.175 0 0 4.9576 0 0 675.250250340103 0 675.250250340103 0 41.35274404843592 0 0 0 2 0 0.9247425010840047 0 + {M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 4.9576 + + 178 + NaN NaN 155178.7 NaN 12643 3487 16131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16133 69.603 NaN 1014300 35 0 163050 0.261 + 29878 VFDEAIRAVL 10 101 566.8217744581414 1131.6289959830826 2 566.8219604492188 MULTI HCD FTMS 0 0 0 16131 353199.875 0.5018228290929118 -2 0.0623779296875 2 Unmodified _VFDEAIRAVL_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 63.227496030279354 0.029684053017782965 2 [YT]PEA{I|L}RAV{I|L} 10 3 + 64.059 0 0 5.6608 5.6608 85.405 0 0 0 4.809776155136333 16.532125137753432 4.809776155136333 4.809776155136333 0 2.1791746928241125 1.3010299956639813 0.3807196863200844 0 [YT]PEA{I|L}RAV{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RAV{I|L};[YT]PEA{I|L}RG{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RAV{I|L};[YT]PEA{I|L}RVA{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RG{I|L}{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RVA{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[QA]A{I|L}GVAV{I|L};[YT]PEA{I|L}GR{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}EVA{I|L}RAV{I|L} 5.6608;5.2357;4.6716;4.6333;4.6204;4.2466;4.1954;4.0556;4.0326;3.8752 -;+;-;-;-;-;-;-;-;- + 1382 NaN NaN 243131.3 NaN 12644 3487 16131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16134 69.606 NaN 330470 35 0 40831 0.261 + 10131 IFLNKTFQW 9 82 598.826977809547 1195.6394026858939 2 598.8269653320312 MULTI HCD FTMS 0 0 0 16131 66457.8046875 0.21049091953755636 7 -0.1833648681640625 3 Unmodified _IFLNKTFQW_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 53.40400417844725 0.026808823219830042 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW 9 0 + 42.947 0 0 3.592 3.592 85.178 0 0 0 0.04232367759662736 9.046153208173777 0.04232367759662736 9.208187539523749 0 1.9916440611282624 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}QW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}NKT{M(Oxidation (M))|F}[AG]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VE{I|L}[C(Carbamidomethyl (C))K]V[KS];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}GGKT{M(Oxidation (M))|F}[AG]W;{[CT]|[{M(Oxidation (M))|F}G]}Q{M(Oxidation (M))|F}P[{M(Oxidation (M))|F}V]{I|L}{[QN]|[E{I|L}]|[KN]};{[CT]|[{M(Oxidation (M))|F}G]}[AG]{M(Oxidation (M))|F}P[{M(Oxidation (M))|F}V]{I|L}{[QN]|[E{I|L}]|[KN]} 3.592;2.8218;2.8218;2.3339;2.0553;1.5535;0.78702 +;-;-;-;-;-;- + 949 + NaN NaN 139288.9 NaN 12645 3487 16131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16135 69.61 NaN 510240 35 0 82498 0.261 + 31819 VYMDWYEKF 9 63 640.7863644925661 1279.5581760519322 2 640.7868041992188 MULTI HCD FTMS 0 0 0 16131 363638.53125 0.3668796376892563 -2 0.0623779296875 4 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 87.25819977447905 0.004597812622239197 2 VYMDWYEK{M(Oxidation (M))|F} 9 0 + 111.58 0 0 8.7201 8.7201 95.527 0 0 0 86.88547520912806 12.389917747712644 12.389917747712644 16.70310309343897 0 2.973197507588033 2 0.6989700043360187 0.3252574989159953 + + VYMDWYEK{M(Oxidation (M))|F};[YV]MDWYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWDMP{M(Oxidation (M))|F};[YV][WD]MYEK{M(Oxidation (M))|F};[YV]MDW{[SA]|[TG]}[YV]{M(Oxidation (M))|F};[Y{I|L}][EC]WYEK{M(Oxidation (M))|F};[YV]MD{[SA]|[TG]}W[YV]{M(Oxidation (M))|F};V{[HG]|PP}EYM[WD]P{M(Oxidation (M))|F};[YV][WD][YE]MK{M(Oxidation (M))|F};[Y{I|L}]Q{[{M(Oxidation (M))|F}D]|MM}[YG]MP{M(Oxidation (M))|F} 8.7201;7.4147;5.3707;5.3273;4.6011;3.9995;3.5046;3.2833;3.1392;1.7093 +;+;-;-;-;-;-;-;-;- + 590 + NaN NaN 160794.8 NaN 12646 3487 16131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16136 69.613 NaN 295390 35 0 88809 0.261 + -1 TMNGYKTANQM 11 59 637.777827919255 1273.5411029053098 2 637.77734375 MULTI HCD FTMS 0 0 0 16131 76072.109375 0.1360469862804389 14 -0.36588287353515625 5 Oxidation (M) _TM(Oxidation (M))NGYKTANQM_ REV__ENSG00000019582|ENST00000009530|CD74;REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF;REV__ENST00000523813.1_1_5:149785162-149785881:-|nuORF;REV__ENST00000523836.5_1_5:149785806-149792312:-|nuORF;REV__nc|ENSG00000019582|P04233-2|CD74;REV__nc|ENSG00000019582|P04233-3|CD74;REV__nc|ENSG00000019582|P04233-4|CD74;REV__nc|ENSG00000019582|P04233-5|CD74 8.97624648632007 0.3788720818291249 2 [YN]{I|L}[R{M(Oxidation (M))|F}]{[MS]|[{M(Oxidation (M))|F}A]}AE[SG] 11 -1 + 50.945 0 0 4.0003 4.0003 87.722 0 0 0 13.105447793863362 15.003185314874194 13.105447793863362 14.813635333387118 0 1.4247425010840047 1.5228787452803376 0.75 0 [YN]{I|L}[R{M(Oxidation (M))|F}]{[MS]|[{M(Oxidation (M))|F}A]}AE[SG];[YN]A[EC]VYY[H{I|L}];[YN]{I|L}[R{M(Oxidation (M))|F}]{[DA]|[EG]}CE[SG];[YN]{I|L}[R{M(Oxidation (M))|F}][EC]AD[SG];[YN]{I|L}[R{M(Oxidation (M))|F}]{[CP]|[EA]}A{M(Oxidation (M))|F}[SG];[C(Carbamidomethyl (C))M]A{[DS]|[MA]|[CV]|TT}[YR]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}A{[QC]|[C(Carbamidomethyl (C))A]}VYY[H{I|L}];{[YD]|[{M(Oxidation (M))|F}M]}A{[QC]|[C(Carbamidomethyl (C))A]}[R{M(Oxidation (M))|F}]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{[YD]|[{M(Oxidation (M))|F}M]}{[WT]|[RM]}Y[H{I|L}];[C(Carbamidomethyl (C))M]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YR]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.0003;2.8371;2.6632;2.452;2.2747;1.579;1.2456;0.73677;0.55429;0.34002 -;-;-;-;-;-;-;-;-;- 266 NaN NaN 139174.7 NaN 12647 3487 16131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16138 69.618 NaN 475260 35 0 47787 0.327 + 1177 AYLESFYKF 9 81 584.2894496602338 1166.5643463872675 2 584.291015625 MULTI HCD FTMS 0 0 0 16137 133363.046875 0.00614534453209542 73 -1.8543548583984375 1 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 79.59630418116434 0.005983006570063981 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 92.947 0 0 7.9676 7.9676 96.242 0 0 0 22.24301211992909 46.53266562845701 22.24301211992909 39.8526785162008 0 3.004432191740108 1.6989700043360187 0.6861818737241735 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))K]{I|L}DDK{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G[KS][DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV][QA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV][KA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KS][DV]E{I|L}{[ES]|[DT]|[{I|L}C]} 7.9676;4.5513;4.1092;3.7413;3.609;3.2076;2.7245;2.7184;2.7184;2.3128 +;-;-;-;-;-;-;-;-;- + 721 NaN NaN 160064.8 NaN 12648 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16139 69.622 NaN 292900 35 0 38000 0.261 + 3034 EADSFFKVL 9 61 528.2737492815584 1054.5329456299166 2 528.2740478515625 MULTI HCD FTMS 0 0 0 16137 151961.5 0.6037707736916217 3 -0.09189605712890625 2 Unmodified _EADSFFKVL_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 43.77239144664712 0.04802738721622131 2 {[CP]|[EA]}DS{M(Oxidation (M))|F}{M(Oxidation (M))|F}KV{I|L} 9 0 + 46.092 0 0 4.3709 4.3709 88.828 0 0 0 16.094983196394566 10.642492736872597 10.642492736872597 19.20818753952375 0 1.1989700043360187 0 0 0 + + {[CP]|[EA]}DS{M(Oxidation (M))|F}{M(Oxidation (M))|F}KV{I|L};{[CP]|[EA]}[WY]{M(Oxidation (M))|F}KV{I|L};{[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))E]|[WC]}[RH]V{I|L} 4.3709;2.5494;1.3628 +;-;- + 115 + NaN NaN 134682.1 NaN 12649 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16140 69.626 NaN 308810 35 0 38935 0.261 + 6232 FPESSAIEAL 10 60 532.2689998259888 1062.5234467187774 2 532.2694091796875 MULTI HCD FTMS 0 0 0 16137 139145.171875 0.5283754135047749 8 -0.2288818359375 3 Unmodified _FPESSAIEAL_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-8|SON;nc|ENSG00000159140|P18583-9|SON 27.628801355627647 0.2527626205058048 2 {I|L}EA{I|L} 4 6 44.993 0 0 4.2345 0 0 618.2657337873062 0 618.2657337873062 0 25.99652758537765 0 0 0 1.305462187404089 0 0 0 + {I|L}EA{I|L} 4.2345 + + 136 NaN NaN 134017.6 NaN 12650 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16141 69.629 NaN 245500 35 0 15111 0.261 + 2958 DYVEGLRVF 9 71 549.2850743294578 1096.5555957257154 2 549.28515625 MULTI HCD FTMS 0 0 0 16137 98005.0625 0.07242239472969553 18 -0.43814849853515625 4 Unmodified _DYVEGLRVF_ ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6 47.594388314883695 0.03493607795751234 2 {[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F} 9 0 + 80.908 0 0 7.3784 7.3784 93.919 0 0 0 20.779550148593486 16.478174818886373 16.478174818886373 20.779550148593486 0 2.805462187404089 2 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F};[YV]DE{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F};[Y{I|L}]DD{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F} 7.3784;5.4834;3.1553 +;-;- + 244 NaN NaN 126378.6 NaN 12651 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16142 69.633 NaN 483860 35 0 57409 0.261 + 30061 VFSTVVIHF 9 76 524.795101384217 1047.575649835234 2 524.795166015625 MULTI HCD FTMS 0 0 0 16137 237603.15625 0.5442266303891907 -1 0.01953125 5 Unmodified _VFSTVVIHF_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 125.62461146993168 0.0008703235425492373 2 V{M(Oxidation (M))|F}STVV{I|L}H{M(Oxidation (M))|F} 9 0 + 86.08 0 0 8.2171 8.2171 90.299 0 0 0 80.59562510389476 13.4362675525918 13.4362675525918 6.288624837399297 0 2.8979400086720375 0 0.4247425010840047 0 + + V{M(Oxidation (M))|F}STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]V{M(Oxidation (M))|F} 8.2171;7.6168;5.7642 +;+;- + 176 + NaN NaN 162541.6 NaN 12652 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16143 69.636 NaN 245640 35 0 67612 0.261 -1 FPANVMDVI 9 42 511.25485591142274 1020.4951588896455 2 511.2550048828125 MULTI HCD FTMS 0 0 0 16137 170179.40625 0.3434381216282844 -21 0.5528030395507812 6 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}DV{I|L} 4 -1 41.542 0 0 4.0708 0 0 528.2714710919937 0 528.2714710919937 0 24.552593986562812 0 0 0 1.1989700043360187 0 0 0 {M(Oxidation (M))|F}DV{I|L} 4.0708 + + 25 NaN NaN 132191 NaN 12653 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16144 69.639 NaN 160020 35 0 28082 0.261 -1 LPDMEVVGL 9 43 494.7545429672116 987.4945330012232 2 494.7546691894531 MULTI HCD FTMS 0 0 0 16137 56038.375 0.4653591555363173 8 -0.2288818359375 7 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 11.640296217721598 0.25978676193971967 2 VG{I|L} 3 -1 36.198 0 0 3.6656 0 0 700.3090255217318 0 700.3090255217318 0 30.713337517843655 0 0 0 1 0 0 0 VG{I|L} 3.6656 + + 22 NaN NaN 127067 NaN 12654 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16145 69.643 NaN 323860 35 0 53740 0.261 + 24625 RYLPTGSFPF 10 55 592.8085510866069 1183.6025492400138 2 592.80908203125 MULTI HCD FTMS 0 0 0 16137 105120.8359375 0.016446280789302554 64 -1.595245361328125 8 Unmodified _RYLPTGSFPF_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 23.789781309258295 0.28859042913526417 2 M{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4 7 36.67 0 0 3.0982 0 0 643.3533802716812 0 643.3533802716812 0 26.18562527100117 0 0 0 0.9247425010840047 0 0 0 M{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3.0982 - 29 NaN NaN 135573.7 NaN 12655 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16146 69.646 NaN 181930 35 0 27873 0.262 -1 MPDLPNVGL 9 40 486.2469580678931 970.4793632025862 2 486.2467041015625 MULTI HCD FTMS 0 0 0 16137 96431.3125 0.6439427517777383 -16 0.430511474609375 9 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.042465956692817 0.2476723265019929 2 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.29726314192 0 683.29726314192 0 19.20818753952375 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 14 NaN NaN 127779.8 NaN 12656 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16147 69.649 NaN 313040 35 0 21539 0.261 + 31896 VYNIHLAVNF 10 70 595.3218535904134 1188.6291542476267 2 595.3206176757812 MULTI HCD FTMS 0 0 0 16137 75346.6953125 0.9828046481051841 4 -0.1147918701171875 10 Unmodified _VYNIHLAVNF_ ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF 36.12702656103203 0.1790159924230938 2 VN{M(Oxidation (M))|F} 3 7 26.471 0 0 2.227 0 0 810.4401769395004 0 810.4401769395004 0 8.935078169319294 0 0 0 0.805462187404089 0 0 0 + VN{M(Oxidation (M))|F} 2.227 + + 146 NaN NaN 136679.6 NaN 12657 3488 16137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16149 69.654 NaN 443950 35 0 54071 0.327 + 24744 RYLWATVTI 9 71 561.8190903639276 1121.623627794655 2 561.8191528320312 MULTI HCD FTMS 0 0 0 16148 270783.6875 0.22224312260548976 9 -0.24175262451171875 1 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 63.960520009940105 0.0120409805053046 2 HATVT{I|L} 6 4 67.013 0 0 5.9747 0 0 481.26762587715 0 481.26762587715 0 47.627881306118454 0 0 0 1.6747425010840047 0 0.8494850021680094 0 HATVT{I|L} 5.9747 - 610 NaN NaN 155559.9 NaN 12658 3489 16148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16150 69.658 NaN 311680 35 0 45998 0.261 -1 VPMEDINL 8 57 473.73115921228344 945.4477654913669 2 473.7310485839844 MULTI HCD FTMS 0 0 0 16148 164544.703125 0.7516448649187629 1 -0.01953887939453125 2 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 36.04419817259434 0.28174663821216267 2 {I|L}N{I|L} 3 -1 38.188 0 0 4.0391 0 0 587.2256402991464 0 587.2256402991464 0 17.487737688117235 0 0 0 0.7742275032520141 0 0 0.4247425010840047 {I|L}N{I|L} 4.0391 + + 45 NaN NaN 137465.2 NaN 12659 3489 16148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16151 69.662 NaN 162740 35 0 19062 0.261 + 7163 FSHFVCNL 8 44 483.72855168795974 965.4425504427195 2 483.7154541015625 MULTI HCD FTMS 0 0 0 16148 21137.408203125 0.42799437195080764 3 -0.07859039306640625 3 Unmodified _FSHFVCNL_ ENST00000463181.5_1_7:26238946-26239063:-|nuORF 5.760428011301431 0.5334459684533844 2 N{M(Oxidation (M))|F}D 3 7 12.307 0 0 1.2748 0 0 131.12495844698566 455.16242395572505 586.2873824027107 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}D 1.2748 - 30 + NaN NaN 128233.2 NaN 12660 3489 16148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16152 69.665 NaN 208610 35 0 16094 0.261 -1 KYMDVQFDF 9 55 604.7687558006563 1207.5229586681126 2 604.7687377929688 MULTI HCD FTMS 0 0 0 16148 89247.3359375 0.628737519677529 14 -0.3371429443359375 4 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 22.65808497894818 0.16459551161911185 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 40.165 0 0 3.3262 0 0 666.304660994841 0 666.304660994841 0 33.17532531436136 0 0 0 1.4247425010840047 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.3262 - 278 NaN NaN 135884.9 NaN 12661 3489 16148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16153 69.669 NaN 158690 35 0 28475 0.262 -1 LPMPTEPLL 9 46 513.7804075513272 1025.5462621694544 2 513.7803955078125 MULTI HCD FTMS 0 0 0 16148 72140.4765625 0.772347025583776 1 -0.01953887939453125 5 Oxidation (M) _LPM(Oxidation (M))PTEPLL_ ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 19.256988751693697 0.19398022840297344 2 EP{I|L}{I|L} 4 -1 34.725 0 0 3.386 0 0 555.2734242169937 0 555.2734242169937 0 19.240247145042062 0 0 0 0.8807196863200843 0 0 0 EP{I|L}{I|L} 3.386 + + 15 NaN NaN 121666.1 NaN 12662 3489 16148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16155 69.674 NaN 2231800 35 0 540750 0.327 + 24435 RYLDEINLL 9 109 574.8190799158277 1147.6236068984554 2 574.8192749023438 MULTI HCD FTMS 0 0 0 16154 1036155.625 0.06044439705677665 12 -0.31002044677734375 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 100.0907132914201 0.004261551473353346 2 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 91.204 0 0 7.9472 7.9472 91.976 0 0 0 10.969100130080562 16.478174818886373 10.969100130080562 9.208187539523749 0 1.9124379954164592 1 0.9194451763165201 0.7302046884880937 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[YR]{I|L}DE{I|L}N{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}N{I|L}{I|L};[Y{I|L}]DRE{I|L}GG{I|L}{I|L};[Y{I|L}]REEVN{I|L}{I|L};[YR]{I|L}DE{I|L}GG{I|L}{I|L};[Y{I|L}]RD{I|L}EGG{I|L}{I|L} 7.9472;7.1449;7.1181;6.9914;6.8112;6.4246;6.3157;6.2857;6.189;6.0088 -;-;-;+;-;-;-;-;-;- + 6902 NaN NaN 389837.6 NaN 12663 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16156 69.678 NaN 290300 35 0 41678 0.261 + 27044 SYMFVDENTF 10 63 634.7604288107735 1267.506304688347 2 634.7609252929688 MULTI HCD FTMS 0 0 0 16154 75713.59375 0.3610392050755168 1 -0.03615570068359375 2 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 65.47368725323818 0.022948616544343086 2 T[{I|L}A]DENT{M(Oxidation (M))|F} 8 5 51.191 0 0 4.0387 0 0 358.113084861525 0 358.113084861525 0 38.7898501052333 0 0 0 0.9247425010840047 0 0.3807196863200844 0 T[{I|L}A]DENT{M(Oxidation (M))|F} 4.0387 - 107 NaN NaN 155281.5 NaN 12664 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16157 69.682 NaN 399190 35 0 44359 0.261 + 1510 AYVEWFNRL 9 78 599.3066412527105 1196.598729572221 2 599.3068237304688 MULTI HCD FTMS 0 0 0 16154 72246.9296875 0.22351826807746977 5 -0.13700103759765625 3 Unmodified _AYVEWFNRL_ ENSG00000138670|ENST00000264400|RASGEF1B;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant 57.72198328787511 0.020768266150574023 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NR{I|L} 9 0 + 77.157 0 0 6.4481 6.4481 90.841 0 0 0 4.503187623076954 4.503187623076954 4.503187623076954 12.430380486862944 0 2.6549471895720984 1.3010299956639813 0 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}{I|L}[RN];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VEW{M(Oxidation (M))|F}GGR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][C(Carbamidomethyl (C))S]NR{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[KS][C(Carbamidomethyl (C))S]{I|L}[RN] 6.4481;5.4092;5.3022;3.5689;2.9064 +;-;-;-;- + 557 NaN NaN 158941.8 NaN 12665 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16158 69.685 NaN 218000 35 0 25388 0.262 + 5008 FCPAWINL 8 59 482.24248315813276 NaN 0 482.24200439453125 PEAK HCD FTMS 0 0 0 16154 42139.453125 0.3278901288284167 -16 0.4441986083984375 4 Unmodified _FCPAWINL_ ENST00000278505.4_1_11:94863553-94863637:+|nuORF 34.18733598223924 0.36535021990301164 2 N[QP]EVV 6 7 21.643 0 0 2.2487 0 0 131.101365955341 162.02312647037346 293.1244924257145 0 0 0 0 0 0.4247425010840047 0 0 0.3494850021680094 N[QP]EVV 2.2487 - 36 + NaN NaN 126698.7 NaN 12666 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16159 69.688 NaN 305750 35 0 17095 0.261 + 29246 TYLNWLVRM 9 70 606.3157651204133 1210.6169773076265 2 606.3165283203125 MULTI HCD FTMS 0 0 0 16154 72531.0703125 0.5594198914635953 -3 0.0752716064453125 5 Oxidation (M) _TYLNWLVRM(Oxidation (M))_ ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 90.13494162714682 0.004522430935000059 2 [YT]{I|L}RWAVGV{M(Oxidation (M))|F} 10 4 + 112.47 0 0 9.2905 9.2905 90.748 0 0 0 18.48258770979733 16.53212513775344 16.53212513775344 4.057875029352971 0 2.274227503252014 2 0.6989700043360187 0.7614393726401688 [YT]{I|L}RWAVGV{M(Oxidation (M))|F};[YT]{I|L}NW{I|L}VR{M(Oxidation (M))|F};[YT]R{I|L}WAVGV{M(Oxidation (M))|F};[YT]RAW{I|L}VGV{M(Oxidation (M))|F};[YT]{I|L}GGW{I|L}VR{M(Oxidation (M))|F};[YT]{I|L}NW{I|L}RV{M(Oxidation (M))|F};[YT]R{I|L}WN{I|L}V{M(Oxidation (M))|F};[YT]GVAW{I|L}VR{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{I|L}WAVGV{M(Oxidation (M))|F};[YT]R{I|L}WGG{I|L}V{M(Oxidation (M))|F} 9.2905;8.9553;8.7131;7.6136;7.5657;7.5261;7.5046;7.3729;7.2665;6.7439 -;+;-;-;-;-;-;-;-;- + 1250 NaN NaN 133839.5 NaN 12667 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16160 69.692 NaN 210810 35 0 14505 0.261 + 35471 YYFAVKTLI 9 78 559.3181852602117 1116.6218175872234 2 559.3179931640625 MULTI HCD FTMS 0 0 0 16154 26045.4140625 0.16028113561179289 7 -0.1926727294921875 6 Unmodified _YYFAVKTLI_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 26.268140514670165 0.13340543277302316 2 YY{M(Oxidation (M))|F}AV[K{I|L}]T{I|L} 9 2 + 61.258 0 0 5.486 5.486 91.269 0 0 0 56.65423722065668 8.172874778693355 8.172874778693355 28.45175337211301 0 1.5114393726401687 2 0 0 YY{M(Oxidation (M))|F}AV[K{I|L}]T{I|L};YY{M(Oxidation (M))|F}AV{I|L}{I|L}[KT];YYA{M(Oxidation (M))|F}V{I|L}{I|L}[KT] 5.486;2.938;2.063 -;-;- 90 + NaN NaN 124123.4 NaN 12668 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16161 69.695 NaN 260040 35 0 27233 0.261 + 13710 KYPLLLESI 9 60 538.3238418856026 1074.6331308380052 2 538.3235473632812 MULTI HCD FTMS 0 0 0 16154 15651.4443359375 0.24077661982960785 1 -0.03615570068359375 7 Unmodified _KYPLLLESI_ ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;nc|ENSG00000132694|O15085|ARHGEF11 49.55428908609986 0.03219431099695407 2 [YK][{I|L}P]{I|L}{I|L}ES{I|L} 9 0 + 38.61 0 0 3.5928 3.5928 89.353 0 0 0 3.317854646137576 5.447698307498982 3.317854646137576 38.609536042143574 0 2.249134866972623 0 0.5994850021680094 0 + + [YK][{I|L}P]{I|L}{I|L}ES{I|L} 3.5928 + + 111 + NaN NaN 138513.9 NaN 12669 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16162 69.698 NaN 164890 35 0 7908.7 0.261 -1 FPFYYEIKM 9 58 627.2985540795502 1252.5825552259003 2 627.3009643554688 MULTI HCD FTMS 0 0 0 16154 19073.31640625 0.18313206730817555 12 -0.31002044677734375 8 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 33.4449034751529 0.0954363425218424 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F} 9 -1 + 42.118 0 0 3.3625 3.3625 89.159 0 0 0 29.41508427897837 7.504311474114331 7.504311474114331 38.69911285071794 0 1.579689690656103 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}K{M(Oxidation (M))|F};[RH]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[{I|L}A]W[Y{M(Oxidation (M))|F}] 3.3625;0.27296 +;- + 132 + NaN NaN 129746.7 NaN 12670 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16163 69.701 NaN 95828 35 0 12675 0.264 + 21163 PPPTISTSI 9 44 456.7555727363678 911.4965925395356 2 456.7558898925781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _PPPTISTSI_ ENST00000482847.5_1_9:116150582-116155760:-|nuORF;nc|ENSG00000148218|P13716-2|ALAD 4.3292370932331545 0.3181982124262546 2 AV{I|L} 3 8 24.693 0 0 2.709 0 0 610.2961292951187 0 610.2961292951187 0 7.703037561203843 0 0 0 0 0 0 0 AV{I|L} 2.709 - 18 NaN NaN 102071.1 NaN 12671 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16164 69.705 NaN 194010 35 0 8120.8 0.261 -1 SYMGHFDLL 9 79 549.7500382976813 1097.4855236621624 2 549.7517700195312 MULTI HCD FTMS 0 0 0 16154 21254.369140625 0.3051942869053244 2 -0.059051513671875 10 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 21.74664581756881 0.17247014374749275 2 {[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}R[C(Carbamidomethyl (C))S] 9 -1 + 33.835 0 0 3.0829 3.0829 80.349 0 0 0 11.922203800570223 2.243012119929098 2.243012119929098 0.45757490560675507 0 0.2742275032520141 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}R[C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]R[C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}[VG][C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}][VG][C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}VE{[VA]|[{I|L}G]}[NG][MT];{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}][NG][MT];[YN]DDVARV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[QV]|[N{I|L}]|[RA]|[KV]}{[QS]|[NT]}DP{M(Oxidation (M))|F};[YN]{[QN]|[E{I|L}]|[KN]}[WQ]V{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[QV]|[N{I|L}]|[RA]|[KV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.0829;3.0412;2.2439;2.1973;2.0626;2.016;1.9966;0.83096;0.64812;0.58109 -;-;-;-;-;-;-;-;-;- 229 NaN NaN 125395.1 NaN 12672 3490 16154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16166 69.71 NaN 6081200 35 0 594660 0.327 + 19818 NYAWVYYHL 9 103 614.7931119449629 1227.5716709567257 2 614.7931518554688 MULTI HCD FTMS 0 0 0 16165 2613770.5 0.041145533353067296 21 -0.4735260009765625 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 2 [YN]AWVYYH{I|L} 9 0 + 118.31 0 0 9.6379 9.6379 95.872 0 0 0 30.739087409443187 16.478174818886373 16.478174818886373 13.908776873262354 0 2.6747425010840047 1.6989700043360187 0 2.598136244196333 + + [YN]AWVYYH{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYADAV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYAWVY{[QV]|[N{I|L}]|[RA]|[KV]}W;NYAWV{M(Oxidation (M))|F}V[SG]W;[YN]AVWW[YN]{I|L};[YN]WAVW[YN]{I|L} 9.6379;8.5049;8.2866;7.1338;6.9046;6.8176;6.4322;6.3175;5.7716;5.5533 +;-;-;+;-;-;-;-;-;- + 4435 NaN NaN 747817.1 NaN 12673 3491 16165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16167 69.714 NaN 1012300 35 0 60512 0.261 + 8618 HDQDICVYIH 10 112 621.7823961721873 1241.5502394111745 2 621.7833251953125 MULTI HCD FTMS 0 0 0 16165 277173.53125 0.051081678825525216 21 -0.4735260009765625 2 Unmodified _HDQDICVYIH_ ENST00000259526.3_1_8:120436340-120436517:+|nuORF 25.399314129420986 0.2735354021946395 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 9 + 81.554 0 0 6.5688 6.5688 92.361 0 0 0 26.56250717957419 14.09256854528806 14.09256854528806 19.279032320494807 0 2.1989700043360187 1.5228787452803376 0.9291746928241127 0.9392404878284264 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SYP;[YN]APCVGV{[DA]|[EG]}HP;[YN][NS][KT]CYH{I|L};[YN]G[SG][KT]CYH{I|L};[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SPY;[YN]APCVR{[DA]|[EG]}AY;[C(Carbamidomethyl (C))M]A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]APCVG{[QN]|[E{I|L}]|[KN]}NY 6.5688;5.0159;4.9142;4.7082;4.6894;4.4917;4.4257;4.4145;4.3736;4.1827 -;-;-;-;-;-;-;-;-;- 10376 NaN NaN 245939.5 NaN 12674 3491 16165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16168 69.718 NaN 325160 35 0 34946 0.261 + 1178 AYLESFYKF 9 61 584.2894496602338 1166.5643463872675 2 584.2894897460938 MULTI HCD FTMS 0 0 0 16165 110285.578125 0.005081939040690136 76 -1.9230575561523438 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 70.33199760932243 0.0089807860198535 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 88.822 0 0 7.614 7.614 93.081 0 0 0 24.762036441594176 43.032057297315546 24.762036441594176 12.781512503836439 0 3.0356668758921828 2 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[QN]|[E{I|L}]|[KN]}E{I|L}{[ES]|[DT]|[{I|L}C]};{[CT]|[{M(Oxidation (M))|F}G]}G[KS][DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TDQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[KS][DV]E{I|L}{[ES]|[DT]|[{I|L}C]};[YR]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HPG{M(Oxidation (M))|F} 7.614;6.5183;3.9664;3.5904;3.4904;3.352;2.7293;2.3947;2.2105;2.1349 +;-;-;-;-;-;-;-;-;- + 526 NaN NaN 137894 NaN 12675 3491 16165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16169 69.721 NaN 279630 35 0 36644 0.261 + -1 ESVCLVMDTF 10 58 601.2588723044493 1200.5031916756984 2 601.2589721679688 MULTI HCD FTMS 0 0 0 16165 91609.34375 0.9195470550879922 -2 0.055694580078125 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ESVCLVM(Oxidation (M))DTF_ REV__ENST00000263207.7_1_22:19958033-19958066:-|nuORF 10.073929032068715 0.4168838835836452 2 T{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.4803 0 0 934.3757067113831 0 934.3757067113831 0 23.322646798160562 0 0 0 0.5 0 0.3807196863200844 0 T{M(Oxidation (M))|F} 2.4803 + + 20 NaN NaN 139814 NaN 12676 3491 16165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16170 69.724 NaN 205900 35 0 16414 0.261 + 1391 AYPYNFSNL 9 60 544.7562201557528 1087.4978873783054 2 544.7564086914062 MULTI HCD FTMS 0 0 0 16165 64253.48828125 0.064857571704102 13 -0.3106689453125 5 Unmodified _AYPYNFSNL_ ENSG00000174282|ENST00000380599|ZBTB4 40.23920728925047 0.06424668180817725 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SN{I|L} 9 0 + 68.579 0 0 6.3061 6.3061 87.423 0 0 0 12.676514697633863 53.88621229653701 12.676514697633863 7.257724967479859 0 1.9247425010840047 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F}SGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}SGG{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{[QV]|[N{I|L}]|[RA]|[KV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[NS]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}SN{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NH[RN]WK;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[RN]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 6.3061;5.6387;5.4594;5.4594;4.792;4.792;3.9064;3.3399;2.9072;2.6695 +;-;-;-;-;-;-;-;-;- + 224 NaN NaN 141533.7 NaN 12677 3491 16165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16171 69.728 NaN 481960 35 0 163860 0.263 + 16454 LSRFLHFYF 9 46 410.55363153528367 1228.639065206051 3 410.8882751464844 MULTI HCD FTMS 0 0 0 16165 73726.5234375 0.22778752995249504 -6 0.17380523681640625 6 Unmodified _LSRFLHFYF_ REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|30|3|anti-sense 6.1918466704503565 0.30407824485930035 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.9462 0 0 753.428843706608 0 753.428843706608 0 31.593793813122062 0 0 0 1 0 0 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 2.9462 + + 13 NaN NaN 161115.5 NaN 12678 3491 16165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16173 69.733 NaN 1318000 35 0 349780 0.327 + 7804 FYPPKVELF 9 61 570.3107063408479 1138.6068597484957 2 570.3106079101562 MULTI HCD FTMS 0 0 0 16172 518249.6875 0.3532804099759427 6 -0.1631622314453125 1 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 43.85829265575387 0.04763305254408404 2 [Y{M(Oxidation (M))|F}]P{[QV]|[N{I|L}]|[RA]|[KV]}[EP]{I|L}{M(Oxidation (M))|F} 9 2 + 35.92 0 0 3.1548 3.1548 88.873 0 0 0 5.430599746173222 16.215234340851485 5.430599746173222 35.92023425729828 0 1.8807196863200843 0 0 0 [Y{M(Oxidation (M))|F}]P{[QV]|[N{I|L}]|[RA]|[KV]}[EP]{I|L}{M(Oxidation (M))|F} 3.1548 - 114 NaN NaN 298012 NaN 12679 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16174 69.737 NaN 730090 35 0 45030 0.261 + 8619 HDQDICVYIH 10 106 621.7823961721873 1241.5502394111745 2 621.7828979492188 MULTI HCD FTMS 0 0 0 16172 306206.4375 0.056432296490010754 22 -0.495941162109375 2 Unmodified _HDQDICVYIH_ ENST00000259526.3_1_8:120436340-120436517:+|nuORF 25.399314129420986 0.2735354021946395 2 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L} 9 9 + 84.851 0 0 6.8343 6.8343 92.605 0 0 0 9.473309632111864 49.694671022475475 9.473309632111864 17.891583842369954 0 2.274227503252014 1.6989700043360187 0.9731975075880328 1.1496498648046138 [YN]AW[{M(Oxidation (M))|F}E]YH{I|L};NYA{[DA]|[EG]}VYPA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AW[{M(Oxidation (M))|F}E][H{I|L}]Y;[YN]AWV{[QD]|[EN]|[WG]|[KD]|[RS]}SPY;[YN]APCVG{[QN]|[E{I|L}]|[KN]}NY;[YN]APCVG{[RE]|[WV]}AY;NHN[WR]WA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NHN{[QD]|[EN]|[WG]|[KD]|[RS]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NHD{[QN]|[E{I|L}]|[KN]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[C(Carbamidomethyl (C))M]A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8343;5.3932;5.3453;5.0022;4.7012;4.6601;4.4708;4.4339;4.3333;4.2867 -;-;-;-;-;-;-;-;-;- 9468 NaN NaN 201267.6 NaN 12680 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16175 69.741 NaN 680930 35 0 48524 0.261 + 2810 DYILNVMKF 9 87 579.7968986948507 1157.5792444565013 2 579.7971801757812 MULTI HCD FTMS 0 0 0 16172 242444.59375 0.6459913032697211 3 -0.07794952392578125 3 Oxidation (M) _DYILNVM(Oxidation (M))KF_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 83.42873516780209 0.004742894019233849 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 9 0 + 97.234 0 0 8.3997 8.3997 94.948 0 0 0 15.791812460476251 16.478174818886373 15.791812460476251 15.791812460476251 0 2.610924374808178 1.6989700043360187 0 0.7302046884880937 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}NV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}AGVV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]D{I|L}GGV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}A{I|L}GVV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{I|L}]DAGVV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}[KG][MT]A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}[KG][{M(Oxidation (M))|F}T]{[DS]|[MA]|[CV]|TT} 8.3997;7.0355;6.9735;6.2583;5.6093;5.2226;4.8941;4.3498;3.0263;3.0109 +;-;-;-;-;-;-;-;-;- + 976 NaN NaN 200349.9 NaN 12681 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16176 69.744 NaN 545270 35 0 28554 0.261 -1 YNAPTDHGLCI 11 95 630.7878241196413 1259.5610953060825 2 630.7879028320312 MULTI HCD FTMS 0 0 0 16172 219968.4375 0.057277999143440846 22 -0.495941162109375 4 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 32.78568957990786 0.18341249061758555 2 [YN]AWMYY 7 -1 64.469 0 0 5.1183 0 0 0 265.13071619205317 265.13071619205317 38.66660094933607 0 0 0 0 1.9247425010840047 1.6989700043360187 0 0 [YN]AWMYY 5.1183 - 1838 + NaN NaN 165765.5 NaN 12682 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16177 69.747 NaN 547630 35 0 66626 0.261 + 4434 EYGKFFVTL 9 58 552.2923591930563 1102.5701654529125 2 552.29248046875 MULTI HCD FTMS 0 0 0 16172 193650.015625 0.17856790271023915 9 -0.23155975341796875 5 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 41.8396318013385 0.056899836730939755 2 [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[{I|L}T] 9 0 + 39.56 0 0 3.588 3.588 89.259 0 0 0 12.688324713653081 9.40536768267237 9.40536768267237 36.70941280735775 0 0.7742275032520141 1.2218487496163564 0.4247425010840047 0 + + [YE][KG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[{I|L}T];[KG][RH]{M(Oxidation (M))|F}[MN][{I|L}T] 3.588;0.25857 +;- + 276 + NaN NaN 174467.8 NaN 12683 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16178 69.751 NaN 527340 35 0 94082 0.261 + 34169 YPDENGFDAF 10 78 587.7379705566718 1173.4613881801436 2 587.738037109375 MULTI HCD FTMS 0 0 0 16172 291860.125 0.8535884163427923 7 -0.19594573974609375 6 Unmodified _YPDENGFDAF_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 61.60191391372663 0.03559593591905874 2 G{M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 5 5 56.317 0 0 4.7992 0 0 618.2276383430029 0 618.2276383430029 0 19.278463447746134 0 0 0 1.7887254899964358 0 0.6747425010840047 0 + G{M(Oxidation (M))|F}DA{M(Oxidation (M))|F} 4.7992 + + 549 NaN NaN 188085.6 NaN 12684 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16179 69.754 NaN 334780 35 0 56369 0.261 + 8604 HCFDLIFAF 9 72 556.7643314515656 NaN 0 556.7521362304688 PEAK HCD FTMS 0 0 0 16172 9027.6943359375 0.878817786908272 -1 0.02289581298828125 7 Unmodified _HCFDLIFAF_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 12.531546534597751 0.23452071659215576 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E[QT]A{I|L} 7 7 23.561 0 0 2.1197 0 0 89.07300127820572 183.05549036197502 272.12849164018075 0 0 0 0 0 0 0 1.0752574989159953 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E[QT]A{I|L} 2.1197 - 118 + NaN NaN 148968.7 NaN 12685 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16180 69.757 NaN 285420 35 0 74973 0.261 + 26233 SPVYSHDMDPF 11 61 647.7768689176379 1293.5391849020757 2 648.2776489257812 MULTI HCD FTMS 0 0 0 16172 39109.96875 0.5835128760197333 1 -0.0328216552734375 8 Unmodified _SPVYSHDMDPF_ REV__ENSG00000213213|ENST00000338005|CCDC183;REV__ENST00000481601.5_1_9:139700881-139702139:+|nuORF;REV__ENST00000484858.1_1_9:139701238-139702139:+|nuORF 16.149105407346934 0.31637472687818013 2 VYMD{[CP]|[EA]}YEK{M(Oxidation (M))|F} 10 -1 + 83.893 0 0 6.4855 6.4855 93.616 0 0 0 62.92342188037523 10.764837301042718 10.764837301042718 39.94341577071616 0 2.329689690656103 1.6989700043360187 0.7742275032520141 0 VYMD{[CP]|[EA]}YEK{M(Oxidation (M))|F};VYMD{[CP]|[EA]}[WH]P{M(Oxidation (M))|F};VYMDD{[YC]|[HE]}AAP{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]K{[YC]|[HE]}DDMP{M(Oxidation (M))|F};[YV][WH]{[CP]|[EA]}DMP{M(Oxidation (M))|F};[YV]AA{[YC]|[HE]}DDMP{M(Oxidation (M))|F};[YV][WH]{[CP]|[EA]}TMEE 6.4855;3.3976;3.269;3.2251;3.1614;3.0329;2.0797 -;-;-;-;-;-;- 181 + NaN NaN 143503.5 NaN 12686 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16181 69.761 NaN 157450 35 0 12023 0.262 + -1 PHCDGCDGC 9 61 539.1631368925551 NaN 0 539.2879638671875 PEAK HCD FTMS 0 0 0 16172 6685.185546875 0.2413662136592172 4 -0.1140899658203125 9 3 Carbamidomethyl (C) _PHC(Carbamidomethyl (C))DGC(Carbamidomethyl (C))DGC(Carbamidomethyl (C))_ REV__ENSG00000273274|ENST00000609129|ZBTB8B;REV__nc|ENSG00000273274|Q8NAP8-2|ZBTB8B 0 0.29524684227089293 2 SE{I|L} 3 -1 10.177 0 0 0.94557 0 0 131.77597503137525 612.3590792291624 744.1350542605376 0 0 0 0 0 0 0 0 0 SE{I|L} 0.94557 - 30 + NaN NaN 110671.7 NaN 12687 3492 16172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16183 69.766 NaN 992210 35 0 167920 0.327 + 31820 VYMDWYEKF 9 78 640.7863644925661 1279.5581760519322 2 640.7865600585938 MULTI HCD FTMS 0 0 0 16182 692416.0625 0.6985875596488277 4 -0.100799560546875 1 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 96.93554129104106 0.004344229100022454 2 VYMDWYEK{M(Oxidation (M))|F} 9 0 + 111.38 0 0 8.7046 8.7046 94.143 0 0 0 10.856056702055511 10.856056702055511 10.856056702055511 10.856056702055511 0 2.973197507588033 2 0.6989700043360187 0.3054621874040891 + + VYMDWYEK{M(Oxidation (M))|F};[YV]MDWYEK{M(Oxidation (M))|F};[YV]MDWEYK{M(Oxidation (M))|F};[YV]MDWYT[VG]{M(Oxidation (M))|F};[YV]MDWE{[HG]|PP}P{M(Oxidation (M))|F};VY{[HG]|PP}EWDMP{M(Oxidation (M))|F};[YV][WD]MYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWDMP{M(Oxidation (M))|F};[YV][WD]MEYK{M(Oxidation (M))|F};[YV]MDW{[SA]|[TG]}[YV]{M(Oxidation (M))|F} 8.7046;7.8562;7.2132;6.196;5.9817;5.9663;5.8445;5.558;5.2016;4.945 +;+;-;-;-;-;-;-;-;- + 1481 + NaN NaN 242218.1 NaN 12688 3493 16182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16184 69.77 NaN 751970 35 0 130080 0.261 + 29879 VFDEAIRAVL 10 92 566.8217744581414 1131.6289959830826 2 566.8218994140625 MULTI HCD FTMS 0 0 0 16182 286697.5 0.40733692372871044 4 -0.100799560546875 2 Unmodified _VFDEAIRAVL_ DDRGK1-RAC1|1|fusion;ENSG00000128340|ENST00000249071|RAC2;ENSG00000136238|ENST00000348035|RAC1;ENSG00000169750|ENST00000306897|RAC3;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;nc|ENSG00000136238|P63000-2|RAC1 55.23464941255904 0.058752269732683056 2 [YT]PEA{I|L}RAV{I|L} 10 3 + 59.02 0 0 5.2155 5.2155 86.321 0 0 0 11.30674456733729 9.030899869919438 9.030899869919438 9.030899869919438 0 1.9846368802282015 1.5228787452803376 0 0 [YT]PEA{I|L}RAV{I|L};[YT]PEA{I|L}RA{I|L}V;[YT]PEA{I|L}RG{I|L}{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RAV{I|L};{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RAV{I|L};[{M(Oxidation (M))|F}V]DEA{I|L}RA{I|L}V;[{M(Oxidation (M))|F}V]DEA{I|L}RG{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RA{I|L}V;{[{M(Oxidation (M))|F}D]|MM}VEA{I|L}RG{I|L}{I|L} 5.2155;4.4174;4.2377;4.2163;3.7329;3.4183;3.2385;2.9348;2.755 -;-;-;+;-;-;-;-;- + 1176 NaN NaN 216009.6 NaN 12689 3493 16182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16185 69.773 NaN 275860 35 0 30303 0.261 + 1179 AYLESFYKF 9 73 584.2894496602338 1166.5643463872675 2 584.2913818359375 MULTI HCD FTMS 0 0 0 16182 133728.046875 0.006162163664582077 78 -1.9745407104492188 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 70.33199760932243 0.0089807860198535 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F} 9 0 + 96.705 0 0 8.2897 8.2897 96.665 0 0 0 22.702264589233394 64.53788113901204 22.702264589233394 38.96759007070116 0 3.305462187404089 1.6989700043360187 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[C(Carbamidomethyl (C))H][QT]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QQSE{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ESQQ{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y[RH]E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}WWQ[PG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R[DV]{M(Oxidation (M))|F}H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[Q{I|L}]{[MG]|[TS]}G[VS] 8.2897;4.9493;4.9004;4.2574;4.2574;4.0386;3.7357;3.7161;3.352;3.3405 +;-;-;-;-;-;-;-;-;- + 871 NaN NaN 142083 NaN 12690 3493 16182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16186 69.777 NaN 231950 35 0 19349 0.261 + 10132 IFLNKTFQW 9 69 598.826977809547 1195.6394026858939 2 598.8262939453125 MULTI HCD FTMS 0 0 0 16182 51050.0390625 0.16169010871216638 13 -0.29053497314453125 4 Unmodified _IFLNKTFQW_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 17.11289562659939 0.2125047172822487 2 W 1 8 19.292 0 0 1.6135 0 0 991.5494959249548 0 991.5494959249548 0 6.460828060918828 0 0 0 0.3807196863200844 0 0 0 + W 1.6135 + + 67 + NaN NaN 126905.5 NaN 12691 3493 16182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16188 69.782 NaN 448900 35 0 123070 0.327 -1 FPANVMDVI 9 48 511.25485591142274 1020.4951588896455 2 511.2546691894531 MULTI HCD FTMS 0 0 0 16187 294639.125 0.5946095939455147 -15 0.40594482421875 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 27.628801355627647 0.12213550946336599 2 [VS]{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F}DV{I|L} 9 -1 + 47.642 0 0 4.6685 4.6685 90.944 0 0 0 0.5192435809753704 33.03781560677692 0.5192435809753704 47.64190937653879 0 1.305462187404089 0 0 0.3494850021680094 [VS]{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F}DV{I|L} 4.6685 - 93 NaN NaN 160877.8 NaN 12692 3494 16187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16189 69.786 NaN 547710 35 0 75507 0.261 + 30062 VFSTVVIHF 9 66 524.795101384217 1047.575649835234 2 524.7951049804688 MULTI HCD FTMS 0 0 0 16187 264618.40625 0.6061046740510017 5 -0.14690399169921875 2 Unmodified _VFSTVVIHF_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 131.29775728308752 0.0005262696486345744 2 [{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F} 9 0 + 90.728 0 0 8.6608 8.6608 96.116 0 0 0 18.696662315049934 72.76933838679369 18.696662315049934 23.214562785677657 0 3 1.154901959985743 1.5356668758921828 0 + + [{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]STV[H{I|L}]{M(Oxidation (M))|F}V 8.6608;6.4447;5.1065 +;-;- + 182 NaN NaN 185846.2 NaN 12693 3494 16187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16190 69.79 NaN 449280 35 0 47156 0.261 + 24745 RYLWATVTI 9 82 561.8190903639276 1121.623627794655 2 561.8189086914062 MULTI HCD FTMS 0 0 0 16187 113896.625 0.09347956602528537 14 -0.31330108642578125 3 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 33.4449034751529 0.0954363425218424 2 [Y{I|L}]RWATVT{I|L} 9 2 + 81.807 0 0 7.2936 7.2936 86.912 0 0 0 19.621892823592972 63.848200093054714 19.621892823592972 1.663865622122671 0 1.25 1.3979400086720375 0.8494850021680094 0 [Y{I|L}]RWATVT{I|L};[Y{I|L}]RAWTVT{I|L};[Y{I|L}]R[EP]{M(Oxidation (M))|F}[KG]{I|L} 7.2936;7.1453;2.2427 -;-;- 526 NaN NaN 165543.4 NaN 12694 3494 16187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16191 69.799 NaN 180060 35 0 29024 0.261 -1 MPDLPNVGL 9 41 486.2469580678931 970.4793632025862 2 486.2469787597656 MULTI HCD FTMS 0 0 0 16187 79640.796875 0.5318201377115903 -10 0.27516937255859375 4 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.042465956692817 0.2476723265019929 2 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.2950306623062 0 683.2950306623062 0 19.20818753952375 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 23 NaN NaN 105113.3 NaN 12695 3494 16187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16192 69.802 NaN 138380 35 0 16500 0.261 + 12557 KSSHSASIPL 10 51 513.7804075513272 1025.5462621694544 2 514.2832641601562 MULTI HCD FTMS 0 0 0 16187 31101.623046875 0.46835963856024104 5 -0.14690399169921875 5 Unmodified _KSSHSASIPL_ REV__ENSG00000110713|ENST00000324932|NUP98;REV__nc|ENSG00000110713|P52948-2|NUP98;REV__nc|ENSG00000110713|P52948-6|NUP98;REV__nc|ENSG00000110713|P52948|NUP98 7.608950283845883 0.4350283211712914 2 N[HM][{I|L}P]{I|L} 6 -1 19.538 0 0 1.9051 0 0 302.15791518379064 0 302.15791518379064 0 17.319393642848482 0 0 0 0.9247425010840047 0 0 0 N[HM][{I|L}P]{I|L} 1.9051 - 11 NaN NaN 123012.3 NaN 12696 3494 16187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16193 69.806 NaN 135060 35 0 12575 0.261 + 28763 TTGMLILYIFL 11 45 642.8695923653221 1283.724631797444 2 643.269775390625 MULTI HCD FTMS 0 0 0 16187 29690.68359375 1 0 0 6 Unmodified _TTGMLILYIFL_ ENST00000415215.1_1_X:73167175-73167235:+|nuORF 5.731851221503515 0.39378271418728467 2 T{I|L}WW 4 9 31.198 0 0 2.4303 0 0 679.4365507630969 0 679.4365507630969 0 21.90614065464281 0 0 0 1.5 0 0 0 T{I|L}WW 2.4303 - 11 NaN NaN 126762.2 NaN 12697 3494 16187 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16195 69.811 NaN 1979600 35 0 484860 0.327 + 24436 RYLDEINLL 9 108 574.8190799158277 1147.6236068984554 2 574.8193969726562 MULTI HCD FTMS 0 0 0 16194 550112.25 0.032090935437229115 17 -0.3726806640625 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 93.93812099017352 0.0044227730261779084 2 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 94.785 0 0 8.2593 8.2593 91.404 0 0 0 8.829076662795742 16.478174818886373 8.829076662795742 8.829076662795742 0 1.9947026752325154 1.0457574905606752 1.0501648626366045 0.5796896906561032 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[YR]{I|L}DE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[Y{I|L}]DRE{I|L}N{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}YRE{I|L}N{I|L}{I|L};[YR]{I|L}DE{I|L}GG{I|L}{I|L};[Y{I|L}]DRE{I|L}GG{I|L}{I|L};[YR]{I|L}D{I|L}EN{I|L}{I|L};[Y{I|L}]RD{I|L}EGG{I|L}{I|L} 8.2593;7.4899;7.4569;7.4512;7.1406;6.7624;6.6876;6.6489;6.3713;6.3382 -;+;-;-;-;-;-;-;-;- + 4657 NaN NaN 407560.2 NaN 12698 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16196 69.815 NaN 412590 35 0 54050 0.262 -1 LEVPDMNI 8 68 473.7311445069164 945.4477360806328 2 473.73089599609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 37.97399986684836 0.256956040331741 2 {I|L}N{I|L} 3 -1 38.06 0 0 4.0256 0 0 587.2251637200983 0 587.2251637200983 0 7.025778828931042 0 0 0 0.805462187404089 0 0 0.3807196863200844 {I|L}N{I|L} 4.0256 - 98 NaN NaN 159245.7 NaN 12699 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16197 69.819 NaN 388940 35 0 36036 0.261 + 24746 RYLWATVTI 9 77 561.8190903639276 1121.623627794655 2 561.8186645507812 MULTI HCD FTMS 0 0 0 16194 37263.828125 0.030583930661385476 15 -0.327606201171875 3 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 40.23920728925047 0.06424668180817725 2 [Y{I|L}]RWATVT{I|L} 9 2 + 83.37 0 0 7.433 7.433 87.039 0 0 0 21.12704280191288 52.21848749616356 21.12704280191288 1.3206844429176101 0 1.305462187404089 1.6989700043360187 0.7742275032520141 0 [Y{I|L}]RWATVT{I|L};[Y{I|L}]RAWTVT{I|L};[Y{I|L}]N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RVT{I|L};[Y{I|L}]GG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RVT{I|L};[Y{I|L}]RW[VS][VS]{I|L} 7.433;7.3152;5.3762;4.5552;2.9738 -;-;-;-;- 915 NaN NaN 160813.2 NaN 12700 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16198 69.822 NaN 865250 35 0 136460 0.261 + 16930 LYGRLLVTF 9 91 541.3238669682104 1080.6331810032207 2 541.3240356445312 MULTI HCD FTMS 0 0 0 16194 120457.328125 0.14784854408881912 -4 0.1008453369140625 4 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 78.7280429016045 0.006263961847259105 2 [Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F} 9 2 + 74.587 0 0 6.9022 6.9022 65.457 0 0 0 9.018637558036673 13.010299956639813 9.018637558036673 0 0 1.9247425010840047 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]A[RV]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}V{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]A[RV]VT{I|L}{M(Oxidation (M))|F} 6.9022;6.9022;6.211;6.211;6.1609;6.1609;6.0676;5.8994;5.8994;5.4697 -;+;-;-;-;-;-;-;-;- + 1990 NaN NaN 215384 NaN 12701 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16199 69.825 NaN 352330 35 0 30946 0.261 + 24747 RYLWATVTI 9 78 561.8190903639276 1121.623627794655 2 562.3208618164062 MULTI HCD FTMS 0 0 0 16194 32707.62890625 0.04128189371066533 15 -0.327606201171875 5 Unmodified _RYLWATVTI_ ENSG00000066279|ENST00000367409|ASPM 28.494509381512117 0.11816142465008336 2 [Y{I|L}]RWATVT{I|L} 9 2 + 73.126 0 0 6.5197 6.5197 92.861 0 0 0 16.800690552576683 53.02764671460736 16.800690552576683 26.197887582883936 0 1 1.5228787452803376 0.805462187404089 0 [Y{I|L}]RWATVT{I|L};[VP][HV]WATVT{I|L} 6.5197;4.184 -;- 327 NaN NaN 142574.4 NaN 12702 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16200 69.829 NaN 114240 35 0 5498 0.261 + 3035 EADSFFKVL 9 55 528.2737492815584 1054.5329456299166 2 528.2742919921875 MULTI HCD FTMS 0 0 0 16194 23013.4921875 0.09143680460769975 10 -0.2226104736328125 6 Unmodified _EADSFFKVL_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 10.823927491677226 0.26684000660059787 2 E{I|L} 2 7 22.959 0 0 2.1772 0 0 794.417284080275 0 794.417284080275 0 7.474250108400469 0 0 0 0 0 0.5 0 E{I|L} 2.1772 - 23 NaN NaN 101831.3 NaN 12703 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16201 69.832 NaN 87665 35 0 15326 0.261 -1 LPDMEVVGL 9 37 494.7545429672116 987.4945330012232 2 494.754638671875 MULTI HCD FTMS 0 0 0 16194 9537.0966796875 0.07919885716042963 15 -0.327606201171875 7 Oxidation (M) _LPDM(Oxidation (M))EVVGL_ DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1 11.640296217721598 0.25978676193971967 2 VG{I|L} 3 -1 36.198 0 0 3.6656 0 0 700.3096526997132 0 700.3096526997132 0 22.21848749616356 0 0 0 1 0 0 0 VG{I|L} 3.6656 + + 9 NaN NaN 104084 NaN 12704 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16202 69.835 NaN 195480 35 0 11623 0.261 -1 VTVPKLEPGFR 11 59 642.8695923653221 1283.724631797444 2 642.8698120117188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VTVPKLEPGFR_ ENST00000357058.7_1_9:36400676-36400712:-|nuORF 7.608950283845883 0.38555039536024605 2 T{I|L}WW 4 -1 30.005 0 0 2.3373 0 0 679.4378820149389 0 679.4378820149389 0 8.055847141874892 0 0 0 1.3807196863200843 0 0 0 T{I|L}WW 2.3373 - 24 NaN NaN 114746.1 NaN 12705 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16203 69.838 NaN 196260 35 0 14750 0.263 + 26772 SYGDILHVI 9 60 508.77415865977554 1015.5337643863511 2 508.7744140625 MULTI HCD FTMS 0 0 0 16194 19630.92578125 0.022113172205599718 17 -0.3726806640625 9 Unmodified _SYGDILHVI_ ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-2|DLG3;nc|ENSG00000082458|Q92796-3|DLG3 21.74664581756881 0.17247014374749275 2 [Y{I|L}]DRE{I|L}N 7 7 37.465 0 0 3.6892 0 0 0 109.06639313074484 109.06639313074484 29.50659450546418 0 0 0 0 0 1.5228787452803376 0.4247425010840047 0.3252574989159953 [Y{I|L}]DRE{I|L}N 3.6892 - 331 NaN NaN 121738.2 NaN 12706 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16204 69.842 NaN 55084 35 0 8615.8 0.261 -1 TKKEHPPAMNH 11 40 435.885349316202 NaN 0 435.65673828125 PEAK HCD FTMS 0 0 0 16194 6245.5869140625 0.552566649689156 -1 0.02890777587890625 10 Oxidation (M) _TKKEHPPAM(Oxidation (M))NH_ ENSG00000141068|ENST00000644974|KSR1;KSR1|p.Y604*|1|0.26|ENSG00000141068|chr17:27609259-27609260|TA/-|frameshift_variant;nc|ENSG00000141068|Q8IVT5-2|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97968.7 NaN 12707 3495 16194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16206 69.847 NaN 215040 35 0 27695 0.327 -1 SYMFVDENTF 10 59 634.7604288107735 1267.506304688347 2 635.2619018554688 MULTI HCD FTMS 0 0 0 16205 43823.4140625 0.29708491822136635 7 -0.14446258544921875 1 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 21.590151480376914 0.30916502439568466 2 T[{I|L}A]DE{[QS]|[NT]}{M(Oxidation (M))|F} 8 -1 27.484 0 0 2.1684 0 0 358.11262709785314 0 358.11262709785314 0 17.307131330965717 0 0 0 0.7302046884880937 0 0.3807196863200844 0 T[{I|L}A]DE{[QS]|[NT]}{M(Oxidation (M))|F} 2.1684 - 29 NaN NaN 145049.1 NaN 12708 3496 16205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16207 69.851 NaN 208580 35 0 20651 0.264 + -1 LVCRSNQM 8 56 483.7280479188553 NaN 0 483.7153625488281 PEAK HCD FTMS 0 0 0 16205 9335.4716796875 0.4945346026469682 1 -0.01953125 2 Oxidation (M) _LVCRSNQM(Oxidation (M))_ REV__ENSG00000143951|ENST00000272321|WDPCP;REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF;REV__ENST00000493315.1_1_2:63631156-63711794:-|nuORF;REV__nc|ENSG00000143951|O95876-2|WDPCP 6.354104778181461 0.38822285293237185 2 N{M(Oxidation (M))|F}D 3 -1 11.682 0 0 1.2101 0 0 131.12587635919948 455.15989099674067 586.2857673559402 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F}D 1.2101 - 47 + NaN NaN 122087.1 NaN 12709 3496 16205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16208 69.855 NaN 217270 35 0 7663.7 0.261 -1 SYMGHFDLL 9 77 549.7500382976813 1097.4855236621624 2 549.7490234375 MULTI HCD FTMS 0 0 0 16205 35784.3359375 0.5138319945686585 8 -0.17368316650390625 3 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ ENSG00000169976|ENST00000367569|SF3B5 15.847184025352803 0.2234401846867398 2 {[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]R[C(Carbamidomethyl (C))S] 8 -1 + 27.625 0 0 2.5171 2.5171 80.063 0 0 0 3.290587192642249 -6.856281995293401 -6.856281995293401 0.29545237941675495 0 0 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}]R[C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}VEVAR[C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}][NG][MT];{[YD]|[{M(Oxidation (M))|F}M]}VEVA[NG][MT];{[YD]|[{M(Oxidation (M))|F}M]}V[KP][MN][MT];[YN]DD{[VA]|[{I|L}G]}RV{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V[W{I|L}][VG][C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}VEVA[VG][C(Carbamidomethyl (C))S];{[YD]|[{M(Oxidation (M))|F}M]}V[KP]{[QG]|[NA]}[YE];{[YD]|[{M(Oxidation (M))|F}M]}V[KP]{[ET]|[MV]}[C(Carbamidomethyl (C))S] 2.5171;2.4902;1.9683;1.9463;1.8078;1.7614;1.6731;1.6511;1.5348;1.5127 -;-;-;-;-;-;-;-;-;- 314 NaN NaN 121050.9 NaN 12710 3496 16205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16209 69.858 NaN 186830 35 0 12743 0.261 + 32696 WPLKDLTL 8 55 493.2893973492519 984.5642417653038 2 493.2896423339844 MULTI HCD FTMS 0 0 0 16205 33330.3203125 0.3785081002584705 -4 0.1140899658203125 4 Unmodified _WPLKDLTL_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-6|ALS2CL 34.40172386719151 0.3028461740636462 2 WP{I|L} 3 5 40.445 0 0 4.1079 0 0 0 585.325444495676 585.325444495676 23.50711233356286 0 0 0 0 0.4247425010840047 1.3010299956639813 0 0 + WP{I|L} 4.1079 + + 28 + NaN NaN 114188.4 NaN 12711 3496 16205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16210 69.861 NaN 63440 35 0 4775.4 0.261 + 17861 MIFDHEVVFAT 11 50 436.8796107798072 1307.6170029396217 3 436.87933349609375 MULTI HCD FTMS 0 0 0 16205 20002.603515625 0.8754685048884363 4 -0.09799957275390625 5 Unmodified _MIFDHEVVFAT_ REV__ENSG00000164163|ENST00000296577|ABCE1;REV__ENST00000444025.1_1_7:23602199-23602811:-|nuORF;REV__ENST00000510321.1_1_4:146044588-146044753:+|nuORF;REV__ENST00000515678.5_1_4:146042303-146044753:+|nuORF 4.715918219556657 0.3982382512160552 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.0691 0 0 1142.5375484491904 0 1142.5375484491904 0 13.266062568876718 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0691 + + 2 + NaN NaN 91323.3 NaN 12712 3496 16205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16212 69.866 NaN 5620500 35 0 435830 0.327 + 19819 NYAWVYYHL 9 105 614.7931119449629 1227.5716709567257 2 614.7930297851562 MULTI HCD FTMS 0 0 0 16211 2060228.875 0.032431774668535286 27 -0.6433868408203125 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 2 [YN]AWVYYH{I|L} 9 0 + 113.16 0 0 9.2181 9.2181 96.111 0 0 0 26.778259348524358 16.478174818886373 16.478174818886373 17.028937514676485 0 2.6747425010840047 1.6989700043360187 0 2.559894379144197 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYAWVY{[QV]|[N{I|L}]|[RA]|[KV]}W;[H{I|L}]D[QT]VCYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};NYA[{M(Oxidation (M))|F}V]VW[SG]W;NYAW[YK][TP]W;[YN]WAVW[YN]{I|L} 9.2181;7.8309;7.0367;6.5103;6.3633;5.3347;5.22;5.1809;5.1787;5.1231 +;-;+;-;-;-;-;-;-;- + 3633 NaN NaN 813110.2 NaN 12713 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16213 69.871 NaN 1636000 35 0 681860 0.264 + 5418 FHISRLFYF 9 62 410.55363153528367 1228.639065206051 3 410.55364990234375 MULTI HCD FTMS 0 0 0 16211 473916.53125 0.9127415718435113 1 -0.029541015625 2 Unmodified _FHISRLFYF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 9.5439744041441 0.27789851728676895 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 6 36.198 0 0 2.9462 0 0 753.4277540900441 0 753.4277540900441 0 29.20818753952375 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 2.9462 + + 30 NaN NaN 344819 NaN 12714 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16214 69.874 NaN 1126900 35 0 72516 0.261 + 7764 FYNLLTRTF 9 101 587.8164757998832 1173.6183986665662 2 587.8168334960938 MULTI HCD FTMS 0 0 0 16211 517238.21875 0.8533902307485277 -2 0.05567169189453125 3 Unmodified _FYNLLTRTF_ ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT 151.47984550603806 7.261867933578587E-06 2 {M(Oxidation (M))|F}YN{I|L}{I|L}TRT{M(Oxidation (M))|F} 9 0 + 116.65 0 0 9.9397 9.9397 94.114 0 0 0 90.98258770979733 16.478174818886373 16.478174818886373 9.208187539523749 0 3.004432191740108 0 2.528659694992122 0 + + {M(Oxidation (M))|F}YN{I|L}{I|L}TRT{M(Oxidation (M))|F};{M(Oxidation (M))|F}YGG{I|L}{I|L}TRT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[Q{I|L}]VTRT{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}{I|L}TRT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]GG{I|L}{I|L}TRT{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[Q{I|L}]{I|L}SRT{M(Oxidation (M))|F};{[WT]|[RM]}H{I|L}{I|L}T[VG]T{M(Oxidation (M))|F};{[WT]|[RM]}H{I|L}{I|L}T[SG]{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][KA]{I|L}ERT{M(Oxidation (M))|F} 9.9397;9.1551;7.4101;6.9139;6.7916;5.9767;5.8477;5.7827;5.0214;4.4434 +;-;+;-;-;-;-;-;-;- + 1513 + NaN NaN 270980.1 NaN 12715 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16215 69.878 NaN 1462000 35 0 312920 0.261 + 27453 SYVRSLPFF 9 103 558.2989435185425 1114.583334103885 2 558.298095703125 MULTI HCD FTMS 0 0 0 16211 522187.21875 0.3054925394330567 -7 0.1926727294921875 4 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 93.16586880292088 0.00444300900000894 2 {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 81.788 0 0 7.338 7.338 89.355 0 0 0 7.449616565321918 53.745528187832214 7.449616565321918 7.552725051033065 0 3.1549471895720984 0 0.9604093769761876 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]SRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};Q[{I|L}A]P{I|L}SRSP{M(Oxidation (M))|F};{I|L}MG[YK]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}RS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};Q[PS]P{I|L}SRV[MT];{I|L}{[HG]|PP}[TP]S{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}MG[YK]{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}RS{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}{M(Oxidation (M))|F}M{I|L} 7.338;6.6604;6.1747;5.8537;5.7774;4.9915;4.8965;4.8865;4.8103;4.417 +;-;-;-;-;-;-;-;-;- + 1752 NaN NaN 327035.8 NaN 12716 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16216 69.881 NaN 705220 35 0 37560 0.261 + -1 LMACGVYLAQT 11 109 621.796778196153 1241.579003459106 2 621.7838134765625 MULTI HCD FTMS 0 0 0 16211 49302.8671875 0.4804855954069028 -2 0.05567169189453125 5 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))AC(Carbamidomethyl (C))GVYLAQT_ REV__ENSG00000119285|ENST00000366582|HEATR1 13.90604991867851 0.33591854289260503 2 [YN]AWV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{M(Oxidation (M))|F} 9 -1 41.677 0 0 3.3568 0 0 0 101.06599541854453 101.06599541854453 4.729524540212324 0 0 0 0 0 1.5228787452803376 0.28872548999643577 1.2468961563093917 [YN]AWV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{M(Oxidation (M))|F} 3.3568 - 4703 NaN NaN 197891 NaN 12717 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16217 69.884 NaN 544290 35 0 117460 0.261 + 7805 FYPPKVELF 9 54 570.3107063408479 1138.6068597484957 2 570.3106689453125 MULTI HCD FTMS 0 0 0 16211 304437.6875 0.20752906108048144 11 -0.22872161865234375 6 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 32.30548876998284 0.10066689432505688 2 {I|L}{M(Oxidation (M))|F} 2 7 22.959 0 0 2.0164 0 0 860.4433903654864 0 860.4433903654864 0 4.006375246153905 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.0164 + + 19 + NaN NaN 175666.2 NaN 12718 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16218 69.888 NaN 157550 35 0 13927 0.262 -1 LACALEVVM 9 45 482.74516033520706 963.4757677372141 2 482.74542236328125 MULTI HCD FTMS 0 0 0 16211 100159.4609375 0.7742599200230845 -7 0.1926727294921875 7 Oxidation (M) _LACALEVVM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 36.04419817259434 0.08350412372117409 2 D[QP]EVV{M(Oxidation (M))|F} 7 -1 51.286 0 0 5.323 0 0 131.10925423586963 0 131.10925423586963 0 33.96668547897406 0 0 0 1.305462187404089 0 0.3494850021680094 0 D[QP]EVV{M(Oxidation (M))|F} 5.323 - 150 + NaN NaN 125807.2 NaN 12719 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16219 69.891 NaN 128530 35 0 9292.7 0.261 + 12189 KKNPIVETKPM 11 53 642.8695923653221 1283.724631797444 2 642.8698120117188 MULTI HCD FTMS 0 0 0 16211 46152.14453125 1 0 0 8 Unmodified _KKNPIVETKPM_ REV__ENSG00000137872|ENST00000536845|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-2|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-4|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-5|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-6|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D;REV__nc|ENSG00000137872|Q8NFY4-8|SEMA6D;REV__SEMA6D|p.A895Pfs*13|1|0.12|ENSG00000137872|chr15:47771239-47771239|C/-|frameshift_variant 4.5288652416199255 0.3990586020344083 2 T 1 -1 19.877 0 0 1.5484 0 0 679.4384856052502 500.21653162174067 1179.6550172269908 0 0 0 0 0 1 0 0.28872548999643577 0 T 1.5484 + + 10 + NaN NaN 108702.2 NaN 12720 3497 16211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16221 69.896 NaN 663550 35 0 37195 0.327 + -1 LMACGVYLAQT 11 96 621.796778196153 1241.579003459106 2 621.7820434570312 MULTI HCD FTMS 0 0 0 16220 42820.45703125 0.41731067513802195 -1 0.029541015625 1 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))AC(Carbamidomethyl (C))GVYLAQT_ REV__ENSG00000119285|ENST00000366582|HEATR1 19.256988751693697 0.28929563740265996 2 NYAM{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 7 -1 54.83 0 0 4.4162 0 0 0 309.09150110416255 309.09150110416255 3.103283647601401 0 0 0 0 0 1.5228787452803376 0 0.3807196863200844 NYAM{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 4.4162 - 5694 + NaN NaN 185192.6 NaN 12721 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16222 69.9 NaN 889730 35 0 60699 0.261 -1 YIPEMVELF 9 92 578.7817250882354 1155.5488972432706 2 579.7974853515625 MULTI HCD FTMS 0 0 0 16220 10860.302734375 0.388981473961349 1 -0.03278350830078125 2 Oxidation (M) _YIPEM(Oxidation (M))VELF_ ENSG00000215262|ENST00000399881|KCNU1 18.13498045792455 0.20367413111508956 2 YK{M(Oxidation (M))|F}RG{I|L}EP{M(Oxidation (M))|F} 9 -1 + 59.282 0 0 5.1302 5.1302 83.596 0 0 0 -2.9736963957402978 10.846755565910442 -2.9736963957402978 2.449725484634939 0 0 0 0 0.6989700043360187 YK{M(Oxidation (M))|F}RG{I|L}EP{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}NV{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]};YK{M(Oxidation (M))|F}VRAEP{M(Oxidation (M))|F};YK{M(Oxidation (M))|F}VGG[NP]K{M(Oxidation (M))|F};EMNKNV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};YK{M(Oxidation (M))|F}VN[NP]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GR{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]};YK{M(Oxidation (M))|F}RVAEP{M(Oxidation (M))|F};YK{M(Oxidation (M))|F}RG[NP]K{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{I|L}GGV{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 5.1302;4.9182;4.7859;4.7439;4.7309;4.6997;4.6577;4.5254;4.4392;4.3576 -;-;-;-;-;-;-;-;-;- 2347 + NaN NaN 223638.7 NaN 12722 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16223 69.904 NaN 749650 35 0 62412 0.261 + 2929 DYSPYFKTI 9 93 567.279159143842 1132.5437653544839 2 567.2794799804688 MULTI HCD FTMS 0 0 0 16220 166518.015625 0.46788383792529314 33 -0.7638168334960938 3 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 47.7319792270244 0.034743597693959835 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 35.731 0 0 3.1549 0 0 0 764.3987999204284 764.3987999204284 9.699915470362015 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3807196863200844 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.1549 + + 307 NaN NaN 208336.9 NaN 12723 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16224 69.907 NaN 936820 35 0 73463 0.261 -1 EYLLECPSAE 10 94 605.7713775196829 NaN 0 605.7921142578125 PEAK HCD FTMS 0 0 0 16220 20779.3046875 0.7844221010677987 1 -0.03278350830078125 4 Carbamidomethyl (C) _EYLLEC(Carbamidomethyl (C))PSAE_ ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 32.30548876998284 0.18095516228401948 2 K{I|L}{I|L}EYP 6 -1 25.993 0 0 2.149 0 0 163.94575689307823 299.11481653385005 463.0605734269283 0 0 0 0 0 0 0 0.3252574989159953 0 K{I|L}{I|L}EYP 2.149 - 825 + NaN NaN 241103.4 NaN 12724 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16225 69.91 NaN 304170 35 0 17188 0.261 -1 YNAPTDHGLCI 11 63 630.7878241196413 1259.5610953060825 2 631.289794921875 MULTI HCD FTMS 0 0 0 16220 101473.6875 0.03914878786204055 28 -0.6528778076171875 5 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 26.268140514670165 0.22820724222159966 2 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYY 8 -1 68.619 0 0 5.4479 0 0 0 265.1305330865844 265.1305330865844 45.9163750790475 0 0 0 0 2.1307196863200843 1.6989700043360187 0.7302046884880937 0 [YN]A{[MS]|[{M(Oxidation (M))|F}A]}VYY 5.4479 - 674 + NaN NaN 132098.4 NaN 12725 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16226 69.914 NaN 324170 35 0 26287 0.261 + 4435 EYGKFFVTL 9 67 552.2923591930563 1102.5701654529125 2 552.29296875 MULTI HCD FTMS 0 0 0 16220 83478.5390625 0.07697695036891582 15 -0.3166351318359375 6 Unmodified _EYGKFFVTL_ ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17 17.11289562659939 0.2125047172822487 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT 8 4 21.392 0 0 1.9402 0 0 0 146.08372737892788 146.08372737892788 -0.5630250076728771 0 -0.5630250076728771 0 0 0 1.5228787452803376 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}VT 1.9402 - 221 NaN NaN 141066.8 NaN 12726 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16227 69.917 NaN 138870 35 0 16881 0.261 + -1 ESVCLVMDTF 10 48 601.2588723044493 1200.5031916756984 2 601.2582397460938 MULTI HCD FTMS 0 0 0 16220 40236.83984375 0.4038853032867349 5 -0.09539031982421875 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ESVCLVM(Oxidation (M))DTF_ REV__ENST00000263207.7_1_22:19958033-19958066:-|nuORF 10.073929032068715 0.4168838835836452 2 T{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.517 0 0 934.3756233366624 0 934.3756233366624 0 23.226825097560422 0 0 0 0.5 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.517 + + 12 NaN NaN 112354.8 NaN 12727 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16228 69.92 NaN 139120 35 0 5957.9 0.261 -1 FPFYYEIKM 9 54 627.2985540795502 1252.5825552259003 2 627.2985229492188 MULTI HCD FTMS 0 0 0 16220 50368.87109375 0.48361571186198354 20 -0.45369720458984375 8 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 19.361941925380144 0.1930734562688509 2 {I|L}K{M(Oxidation (M))|F} 3 -1 21.911 0 0 1.7493 0 0 846.3617420880875 0 846.3617420880875 0 0.7133375178436552 0 0 0 0.5 0 0 0 {I|L}K{M(Oxidation (M))|F} 1.7493 + + 14 NaN NaN 103555.5 NaN 12728 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16229 69.924 NaN 162370 35 0 9752.4 0.262 + 2096 DFDQLLEAL 9 61 532.2689998259888 1062.5234467187774 2 532.2685546875 MULTI HCD FTMS 0 0 0 16220 42923.078125 0.1629916356247602 18 -0.3883819580078125 9 Unmodified _DFDQLLEAL_ ENSG00000107719|ENST00000263563|PALD1 16.149105407346934 0.22083165093524068 2 QTC(Carbamidomethyl (C)){I|L}EA{I|L} 7 5 37.4 0 0 3.5199 0 0 229.12739760566564 0 229.12739760566564 0 31.7137967609372 0 0 0 1.1069758080123702 0 0 0 QTC(Carbamidomethyl (C)){I|L}EA{I|L} 3.5199 - 85 NaN NaN 119504.6 NaN 12729 3498 16220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16231 69.929 NaN 427040 35 0 62750 0.327 + 31821 VYMDWYEKF 9 78 640.7863644925661 1279.5581760519322 2 640.78662109375 MULTI HCD FTMS 0 0 0 16230 230677.453125 0.23273347886062448 10 -0.20249176025390625 1 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 78.06048673739656 0.006479972202176041 2 VYMDWYEK{M(Oxidation (M))|F} 9 0 + 105.88 0 0 8.2749 8.2749 94.684 0 0 0 79.68433447093204 9.137342758552691 9.137342758552691 15.426740567922437 0 2.8737125054200234 2 0.7302046884880937 0 + + VYMDWYEK{M(Oxidation (M))|F};[YV]MDWYEK{M(Oxidation (M))|F};V{[HG]|PP}EYWDMP{M(Oxidation (M))|F} 8.2749;7.0693;5.0253 +;+;- + 355 + NaN NaN 166054 NaN 12730 3499 16230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16232 69.933 NaN 504040 35 0 139600 0.263 -1 FPANVMDVI 9 56 511.25485591142274 1020.4951588896455 2 511.25482177734375 MULTI HCD FTMS 0 0 0 16230 410335.6875 0.8280961889420783 -10 0.2745361328125 2 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 18.1463463914782 0.20357593197100715 2 {M(Oxidation (M))|F}DV{I|L} 4 -1 39.993 0 0 3.919 0 0 528.2700062482437 0 528.2700062482437 0 21.141303353600094 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}DV{I|L} 3.919 + + 60 NaN NaN 169257.4 NaN 12731 3499 16230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16233 69.937 NaN 376860 35 0 38643 0.261 + 7689 FYLEGGFSKF 10 72 597.7948170205248 NaN 0 597.795166015625 PEAK HCD FTMS 0 0 0 16230 47238.71875 0.6197563349549791 -6 0.16312408447265625 3 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 23.789781309258295 0.24993608346601393 2 {I|L}E 2 8 18.513 0 0 1.5511 0 0 310.13067309840955 638.2940767877561 948.4247498861657 0 0 0 0 0 1.055462187404089 0 0 0 + {I|L}E 1.5511 + + 33 + NaN NaN 150010.6 NaN 12732 3499 16230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16234 69.94 NaN 78583 35 0 4406 0.261 + -1 DVLPLSCCYC 10 44 643.7617797851562 NaN 0 643.7617797851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 3 Carbamidomethyl (C) _DVLPLSC(Carbamidomethyl (C))C(Carbamidomethyl (C))YC(Carbamidomethyl (C))_ REV__ENST00000473758.5_1_14:23536847-23537051:-|nuORF 1.6526216038709556 0.33876987398426067 2 E 1 -1 5.4846 0 0 0.42664 0 0 531.4259915021499 622.0044039361936 1153.4303954383436 0 0 0 0 0 0 0 0 0 E 0.42664 - 6 + NaN NaN 95720.5 NaN 12733 3499 16230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16236 69.945 NaN 994840 35 0 253740 0.327 + 24437 RYLDEINLL 9 97 574.8190799158277 1147.6236068984554 2 574.8193969726562 MULTI HCD FTMS 0 0 0 16235 492068.5625 0.028704942436525705 22 -0.5193634033203125 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 61.60191391372663 0.015340508911304802 2 [Y{I|L}]RDE{I|L}N{I|L}{I|L} 9 2 + 70.283 0 0 6.1242 6.1242 88.739 0 0 0 3.65279269351241 42.039106406846045 3.65279269351241 9.208187539523749 0 1.6549471895720984 0 0.2614393726401688 0.3494850021680094 [Y{I|L}]RDE{I|L}N{I|L}{I|L};[Y{I|L}]RDE{I|L}GG{I|L}{I|L};[Y{I|L}]RD{I|L}EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]E{I|L}N{I|L}{I|L};[Y{I|L}]REEVN{I|L}{I|L};[Y{I|L}]RD{I|L}EGG{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[YR]EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]E{I|L}GG{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YR]EN{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}EN{I|L}{I|L} 6.1242;5.3219;4.9211;4.5982;4.1586;4.1188;3.8296;3.7958;3.4138;3.3951 -;-;-;-;-;-;-;-;-;- 1671 NaN NaN 251044.5 NaN 12734 3500 16235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16237 69.949 NaN 313390 35 0 39818 0.262 -1 VPMEDINL 8 61 473.7311445069164 945.4477360806328 2 473.73126220703125 MULTI HCD FTMS 0 0 0 16235 156149.96875 0.5003530249244308 -9 0.2349853515625 2 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 36.04419817259434 0.28174663821216267 2 {I|L}N{I|L} 3 -1 37.842 0 0 4.0025 0 0 587.2252626599105 0 587.2252626599105 0 22.48007767582181 0 0 0 0.7396518287104438 0 0 0.4247425010840047 {I|L}N{I|L} 4.0025 + + 31 NaN NaN 140570.8 NaN 12735 3500 16235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16238 69.953 NaN 171770 35 0 27033 0.261 -1 MPDLPNVGL 9 31 486.2469580678931 970.4793632025862 2 486.2469787597656 MULTI HCD FTMS 0 0 0 16235 74019.6484375 0.49428359798031907 -4 0.09799957275390625 3 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 13.042465956692817 0.2476723265019929 2 VG{I|L} 3 -1 36.198 0 0 3.7299 0 0 683.2957328896157 0 683.2957328896157 0 36.197887582883936 0 0 0 1 0 0 0 VG{I|L} 3.7299 + + 15 NaN NaN 118722.7 NaN 12736 3500 16235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16239 69.956 NaN 216060 35 0 23057 0.261 + 30063 VFSTVVIHF 9 57 524.795101384217 1047.575649835234 2 524.7950439453125 MULTI HCD FTMS 0 0 0 16235 79095.7734375 0.18116773756416582 11 -0.22902679443359375 4 Unmodified _VFSTVVIHF_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 70.71552829651908 0.008856681705782516 2 [{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F} 9 0 [{M(Oxidation (M))|F}V] + + 49.455 5.2288 2.1243 4.7209 4.7209 61.889 0 0 0 0 46.35615093082315 0 0 0 1.524227503252014 0 0.4247425010840047 0 + + [{M(Oxidation (M))|F}V]STVV{I|L}H{M(Oxidation (M))|F} 4.7209 + + 77 + NaN NaN 137477.2 NaN 12737 3500 16235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16240 69.959 NaN 257090 35 0 21768 0.261 -1 YIFMKLCF 8 71 561.2783540530892 NaN 0 561.2926025390625 PEAK HCD FTMS 0 0 0 16235 24642.552734375 0.7169435115891876 2 -0.03887939453125 5 Carbamidomethyl (C) _YIFMKLC(Carbamidomethyl (C))F_ ENST00000324439.9_1_4:76407428-76407527:-|nuORF 10.183394434864962 0.38822285293237185 2 KN{M(Oxidation (M))|F} 3 -1 14.055 0 0 1.2543 0 0 148.02940559333393 580.2886056977976 728.3180112911316 0 0 0 0 0 0 0 0 0.3252574989159953 KN{M(Oxidation (M))|F} 1.2543 - 136 + NaN NaN 150554.4 NaN 12738 3500 16235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16242 69.964 NaN 1033200 35 0 186430 0.327 + 16931 LYGRLLVTF 9 85 541.3238669682104 1080.6331810032207 2 541.323974609375 MULTI HCD FTMS 0 0 0 16241 685704.1875 0.8416288770101062 2 -0.0269927978515625 1 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 107.1870275148908 0.00340162908551068 2 [Y{I|L}]{[NV]|[RG]}{I|L}{I|L}VT{M(Oxidation (M))|F} 9 0 + 79.657 0 0 7.3714 7.3714 87.613 0 0 0 8.507112333562858 16.478174818886373 8.507112333562858 3.0102999566398125 0 2.1747425010840047 1.6989700043360187 0.3807196863200844 0 + + [Y{I|L}]{[NV]|[RG]}{I|L}{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}V{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{I|L}{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]A[RV]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]A{I|L}[RV]VT{M(Oxidation (M))|F} 7.3714;7.0928;6.6301;6.5841;6.5733;6.5445;6.3515;6.2947;6.266;6.0717 +;-;-;-;-;-;-;-;-;- + 1790 NaN NaN 247182.8 NaN 12739 3501 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16243 69.969 NaN 189810 35 0 7360.3 0.261 -1 0 56 629.3142863865784 628.3070099199783 1 629.3145751953125 MULTI HCD FTMS 0 0 0 16241 213413.734375 0.4035776146084182 -3 0.06839752197265625 2 NaN NaN 2 [YN]A 3 -1 18.161 0 0 2.8904 0 0 0 277.1418847581221 277.1418847581221 12.676062401770313 0 0 0 0 0 1.3979400086720375 0 0 [YN]A 2.8904 - 15 NaN NaN 143241.3 NaN 12740 3501 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16244 69.972 NaN 587650 35 0 60524 0.261 -1 FFDAELSQM 9 69 552.2393322777056 1102.464111622211 2 552.2394409179688 MULTI HCD FTMS 0 0 0 16241 68933.375 0.678063539369961 26 -0.610687255859375 3 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 31.26834338654808 0.10542797264966089 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]E{I|L}SQ{M(Oxidation (M))|F} 9 -1 + 42.73 0 0 3.8759 3.8759 85.452 0 0 0 10.940899702813027 14.392200779062492 10.940899702813027 9.208187539523749 0 1.110924374808178 1.3979400086720375 0.5 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]E{I|L}SQ{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]E{I|L}S[AG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]T{NN|[MP]|[D{I|L}]|[EV]}Q{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]T[TA]V[EC];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DS]|[MA]|[CV]|TT}[YK]V[EC] 3.8759;3.0406;0.78896;0.76423;0.5988 -;-;-;-;- 471 NaN NaN 192051 NaN 12741 3501 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16245 69.975 NaN 495710 35 0 44140 0.261 + 17599 LYWRSLATL 9 85 561.8184312249516 1121.6223095167031 2 561.818603515625 MULTI HCD FTMS 0 0 0 16241 36762.1953125 0.4273732006372869 -11 0.29061126708984375 4 Unmodified _LYWRSLATL_ REV__ENSG00000198133|ENST00000554480|TMEM229B 26.88365393820708 0.12808753336095696 2 [Y{I|L}]N{M(Oxidation (M))|F}[RP]VT{I|L} 9 -1 + 57.33 0 0 5.1113 5.1113 84.298 0 0 0 12.292418483414949 22.001962355242945 12.292418483414949 4.286662482156345 0 0.5 1.6989700043360187 0.4247425010840047 0 [Y{I|L}]N{M(Oxidation (M))|F}[RP]VT{I|L};[Y{I|L}]R{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TVT{I|L};[Y{I|L}]GG{M(Oxidation (M))|F}[RP]VT{I|L} 5.1113;4.7291;4.2903 -;-;- 583 NaN NaN 175126.6 NaN 12742 3501 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16246 69.979 NaN 496570 35 0 51145 0.261 + 7690 FYLEGGFSKF 10 78 597.7948170205248 NaN 0 597.7940063476562 PEAK HCD FTMS 0 0 0 16241 47788.7578125 0.6269726651704778 -4 0.09793853759765625 5 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 29.84058131909904 0.2009219809393727 2 {I|L}E 2 8 22.831 0 0 1.9128 0 0 310.1325337128682 638.2943276893292 948.4268614021973 0 0 0 0 0 1.1861818737241734 0 0 0 + {I|L}E 1.9128 + + 67 + NaN NaN 179825.7 NaN 12743 3501 16241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16248 69.984 NaN 171720 35 0 18891 0.411 -1 MPDVDFNL 8 73 483.7159456666984 965.4173384001969 2 483.7154541015625 MULTI HCD FTMS 0 0 0 16247 80953.0078125 0.48486622782512895 -2 0.03887939453125 1 Oxidation (M) _M(Oxidation (M))PDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 D{M(Oxidation (M))|F}N{I|L} 4 -1 37.735 0 0 3.9087 0 0 458.1821056179064 0 458.1821056179064 0 13.534539788859945 0 0 0 0.4247425010840047 0 0 0.3054621874040891 D{M(Oxidation (M))|F}N{I|L} 3.9087 + + 153 NaN NaN 141012.1 NaN 12744 3502 16247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16250 69.991 NaN 3446300 35 0 302660 0.327 + 19820 NYAWVYYHL 9 99 614.7931119449629 1227.5716709567257 2 614.79248046875 MULTI HCD FTMS 0 0 0 16249 1161423.625 0.018282934366073006 33 -0.7993545532226562 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 158.20266083822983 1.5497770410472245E-07 2 [YN]AWVYYH{I|L} 9 0 + 112.52 0 0 9.1661 9.1661 94.863 0 0 0 30.119478172486467 16.478174818886373 16.478174818886373 11.637564326065728 0 2.5994850021680094 1.6989700043360187 0 2.5713337517843655 + + [YN]AWVYYH{I|L};[YN]AVWYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};NYADAV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AWVW[YN]{I|L};[YN]AVWW[YN]{I|L};[YN]WAVW[YN]{I|L};{[WN]|[YH]}YAVYYH{I|L};NYA[{M(Oxidation (M))|F}V]{[DA]|[EG]}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.1661;8.2181;7.8147;6.7125;6.4378;6.4328;5.4848;5.0815;5.0249;4.7483 +;-;-;+;-;-;-;-;-;- + 3134 NaN NaN 619451.8 NaN 12745 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16251 69.995 NaN 841540 35 0 326640 0.264 + 5419 FHISRLFYF 9 54 410.55363153528367 1228.639065206051 3 410.5537414550781 MULTI HCD FTMS 0 0 0 16249 221380.65625 0.42636902246986785 7 -0.147003173828125 2 Unmodified _FHISRLFYF_ ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 9.5439744041441 0.27789851728676895 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 6 36.198 0 0 2.9462 0 0 753.4276298856813 0 753.4276298856813 0 29.631068929195408 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 2.9462 + + 17 NaN NaN 207490.3 NaN 12746 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16252 69.999 NaN 1097900 35 0 186640 0.261 + 24585 RYLPDTLLL 9 86 552.3264929919228 1102.6384330506455 2 552.3267822265625 MULTI HCD FTMS 0 0 0 16249 99394.109375 0.015458574029222946 -9 0.20951080322265625 3 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 32.78568957990786 0.09846250359632436 2 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L} 9 2 + 48.488 0 0 4.3975 4.3975 87.302 0 0 0 5.174837133936315 11.77920803767148 5.174837133936315 11.197887582883936 0 0.9247425010840047 1.0969100130080565 0.9731975075880328 0 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QA][KG]T{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV[DP]T{I|L}{I|L}{I|L} 4.3975;3.3819;2.4885 -;-;- 752 NaN NaN 254617.7 NaN 12747 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16253 70.002 NaN 135930 35 0 9380.6 0.261 + 32697 WPLKDLTL 8 49 493.2893973492519 984.5642417653038 2 493.2897033691406 MULTI HCD FTMS 0 0 0 16249 44633.45703125 0.5068695671229609 3 -0.0648040771484375 4 Unmodified _WPLKDLTL_ ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-6|ALS2CL 18.1463463914782 0.46027927471454505 2 WP{I|L} 3 5 26.075 0 0 2.6484 0 0 0 585.3252047174436 585.3252047174436 11.470748756446607 0 0 0 0 0.28872548999643577 0 0 0 + WP{I|L} 2.6484 + + 23 + NaN NaN 122573.8 NaN 12748 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16254 70.006 NaN 406550 35 0 36232 0.261 + 13158 KYLPEWTAW 9 67 597.3024899998353 NaN 0 597.3192749023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KYLPEWTAW_ ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1 9.38312468134398 0.24977752951804 2 D{M(Oxidation (M))|F}Q 3 9 9.0411 0 0 0.7581 0 0 166.1436019705705 633.2713218830236 799.414923853594 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}Q 0.7581 - 81 + NaN NaN 156244.3 NaN 12749 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16255 70.009 NaN 197490 35 0 17572 0.261 -1 SYMFVDENTF 10 55 634.7604288107735 1267.506304688347 2 634.7615356445312 MULTI HCD FTMS 0 0 0 16249 58925.125 0.28098362837222296 14 -0.32547760009765625 6 Oxidation (M) _SYM(Oxidation (M))FVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 2.9952420565917617 0.4594494122822477 2 VYWRP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7 -1 25.45 0 0 2.0079 0 0 291.0182808619782 0 291.0182808619782 0 19.96539467890493 0 0 0 0 0 0 0 VYWRP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 2.0079 - 77 + NaN NaN 128391.1 NaN 12750 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16256 70.012 NaN 121510 35 0 9104.2 0.262 + 14598 LFPFPIHGH 9 51 532.7879112373909 1063.5612695415816 2 533.2726440429688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LFPFPIHGH_ ENSG00000010818|ENST00000367603|HIVEP2 5.230669730166228 0.3113646817964458 2 P{I|L}E 3 7 24.693 0 0 2.3217 0 0 706.3432484357437 0 706.3432484357437 0 22.21848749616356 0 0 0 0 0 0 0 P{I|L}E 2.3217 - 11 NaN NaN 101745.1 NaN 12751 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16257 70.016 NaN 133830 35 0 7375 0.261 + 2460 DQYCKDHF 8 48 528.2167358398438 NaN 0 528.2167358398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _DQYCKDHF_ ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant 2.302733041254933 0.38822285293237185 2 V 1 8 4.6041 0 0 0.43665 0 0 148.99015248516815 803.3305147760374 952.3206672612055 0 0 0 0 0 0 0 0 0 V 0.43665 - 7 + NaN NaN 121795.4 NaN 12752 3503 16249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16259 70.02 NaN 2668600 35 0 620470 0.327 + 27454 SYVRSLPFF 9 115 558.2989435185425 1114.583334103885 2 558.298095703125 MULTI HCD FTMS 0 0 0 16258 1709328.875 1 0 0 1 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 93.16586880292088 0.00444300900000894 2 {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 86.52 0 0 7.7626 7.7626 90.045 0 0 0 4.137342758552691 63.84434091480394 4.137342758552691 7.257724967479859 0 3.110924374808178 0 1.079689690656103 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]SRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};NPTP{I|L}SRV[MT];{M(Oxidation (M))|F}[YV]{I|L}SRSP{M(Oxidation (M))|F};Q[PS]P{I|L}SRV[MT];{M(Oxidation (M))|F}[YV]{I|L}SRV[MT];[YV]{M(Oxidation (M))|F}{I|L}SR[PS]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}{M(Oxidation (M))|F}M{I|L};NP[{I|L}P][NG]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}[YV]SRSP{M(Oxidation (M))|F} 7.7626;7.1114;6.8528;5.5895;5.4761;4.3798;4.2211;4.1599;4.0793;3.8626 +;-;-;-;-;-;-;-;-;- + 2057 NaN NaN 500728.4 NaN 12753 3504 16258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16260 70.025 NaN 832850 35 0 56925 0.261 + 7765 FYNLLTRTF 9 93 587.8164757998832 1173.6183986665662 2 587.8170166015625 MULTI HCD FTMS 0 0 0 16258 383987.875 0.6335407736164833 5 -0.11066436767578125 2 Unmodified _FYNLLTRTF_ ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT 125.0377797344192 0.0009059125702818869 2 [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 9 0 [Y{M(Oxidation (M))|F}] + + 91.873 3.7236 1.2007 7.8282 7.8282 67.128 0 0 0 0 75.00585741805523 0 0 0 3.004432191740108 0 1.2856668758921828 0 + + [Y{M(Oxidation (M))|F}]N{I|L}{I|L}TRT{M(Oxidation (M))|F} 7.8282 + + 812 + NaN NaN 217480 NaN 12754 3504 16258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16261 70.028 NaN 1689300 35 0 185720 0.261 + 29426 TYTDRVFFL 9 108 581.3005218108478 1160.5864906884956 2 581.30078125 MULTI HCD FTMS 0 0 0 16258 1021496.3125 0.2349429947807507 -5 0.091827392578125 3 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 106.94017166704063 0.003441928997083001 2 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 104.36 0 0 8.9922 8.9922 95.57 0 0 0 21.751736484954378 77.30578103258908 21.751736484954378 15.268024924119672 0 2.805462187404089 1.6989700043360187 1.850576203518622 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT][RD]TV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TV[RD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT][RD]T{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}RV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[RE]|[WV]}TV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT][RD]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}R{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L} 8.9922;7.6767;6.5151;6.5067;6.4612;5.1995;5.1121;4.4258;4.0296;3.7965 +;-;-;-;-;-;-;-;-;- + 3981 NaN NaN 359492.2 NaN 12755 3504 16258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16263 70.033 NaN 556110 35 0 44471 0.327 + 16847 LYEHNFAFF 9 69 594.2806410734136 1186.546729213627 2 594.2689208984375 MULTI HCD FTMS 0 0 0 16262 91775.875 0.5005256082330292 -4 0.069000244140625 1 Unmodified _LYEHNFAFF_ ENSG00000060642|ENST00000674202|PIGV 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F} 9 7 + 27.17 0 0 2.2898 2.2898 81.621 0 0 0 12.393324630099873 4.659905027075272 4.659905027075272 4.247425010840047 0 0.3494850021680094 0 1.2302046884880937 0 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D[RN]T{M(Oxidation (M))|F} 2.2898;1.9318 -;- 165 + NaN NaN 182995.8 NaN 12756 3505 16262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16264 70.038 NaN 556420 35 0 38670 0.261 + 32187 VYTDFAFRI 9 85 566.2955546601535 1130.5765563871068 2 566.2952880859375 MULTI HCD FTMS 0 0 0 16262 266735.34375 0.44656075438175197 -4 0.069000244140625 2 Unmodified _VYTDFAFRI_ ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF 110.6747026088012 0.0028322563155251486 2 [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L} 9 0 + 94.963 0 0 8.3995 8.3995 93.692 0 0 0 16.896964549040376 74.16054693457546 16.896964549040376 10.510299956639813 0 2.8494850021680094 1.6989700043360187 1.7416440611282626 0 + + [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]TD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};[YV]TA{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}R{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}A{M(Oxidation (M))|F}R{I|L};[YV]TA{[{M(Oxidation (M))|F}D]|MM}R{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}AR{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S[C(Carbamidomethyl (C))R][HV]R{I|L};[YQ][C(Carbamidomethyl (C))R][HV]R{I|L} 8.3995;7.4698;6.4516;6.0281;5.522;5.0985;4.0017;3.0721;1.1605;0.54235 +;-;-;-;-;-;-;-;-;- + 1155 NaN NaN 178847.6 NaN 12757 3505 16262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16265 70.041 NaN 665660 35 0 51195 0.261 + 33170 YEQSALVVSSQ 11 92 605.8029350388218 NaN 0 605.7926025390625 PEAK HCD FTMS 0 0 0 16262 38140.9609375 0.8434376224459544 -1 0.012786865234375 3 Unmodified _YEQSALVVSSQ_ REV__ENSG00000176715|ENST00000614302|ACSF3 23.789781309258295 0.2270700001490706 2 YE{I|L}{I|L} 4 -1 14.781 0 0 1.222 0 0 417.21858872823105 271.07102380924067 688.2896125374717 0 0 0 0 0 0 0 0 0 YE{I|L}{I|L} 1.222 - 1230 + NaN NaN 192624.8 NaN 12758 3505 16262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16266 70.044 NaN 661250 35 0 46753 0.261 + 20522 PDRQHENLFS 10 98 621.796778196153 1241.579003459106 2 621.781494140625 MULTI HCD FTMS 0 0 0 16262 36634.2265625 0.35702220106616767 6 -0.14055633544921875 4 Unmodified _PDRQHENLFS_ REV__ENSG00000101333|ENST00000378473|PLCB4;REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF;REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF;REV__nc|ENSG00000101333|Q15147-2|PLCB4;REV__nc|ENSG00000101333|Q15147-4|PLCB4;REV__nc|ENSG00000101333|Q15147-5|PLCB4;REV__nc|ENSG00000101333|Q15147|PLCB4;REV__PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant 14.405379775768559 0.37636895476610294 2 [YN]AA[VP]{M(Oxidation (M))|F}MP{M(Oxidation (M))|F} 10 -1 42.802 0 0 3.4474 0 0 0 101.06659869582305 101.06659869582305 13.881331949674006 0 0 0 0 0 1.6989700043360187 0 0.9436726795685343 [YN]AA[VP]{M(Oxidation (M))|F}MP{M(Oxidation (M))|F} 3.4474 - 4326 NaN NaN 212977 NaN 12759 3505 16262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16267 70.048 NaN 126610 35 0 10064 0.261 + -1 ESVCLVMDTF 10 54 601.2588723044493 1200.5031916756984 2 601.2601928710938 MULTI HCD FTMS 0 0 0 16262 24512.248046875 0.24604657759149481 12 -0.28347015380859375 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))ESVCLVM(Oxidation (M))DTF_ REV__ENST00000263207.7_1_22:19958033-19958066:-|nuORF 6.2057823575117 0.44245551207394906 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1632 0 0 934.3733807271907 0 934.3733807271907 0 18.979400086720375 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.1632 + + 18 NaN NaN 116047.7 NaN 12760 3505 16262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16268 70.051 NaN 385050 35 0 78048 0.263 + 1052 AYGLVSATF 9 55 464.742274081106 927.469995229012 2 464.74267578125 MULTI HCD FTMS 0 0 0 16262 41435.75 0.11259940331684637 -7 0.13739776611328125 6 Unmodified _AYGLVSATF_ ENSG00000156875|ENST00000370152|MFSD14A 54.773552608820026 0.024892918755467567 2 PVSAT{M(Oxidation (M))|F} 6 4 53.027 0 0 5.7174 0 0 307.1516491370183 0 307.1516491370183 0 45.067978389287404 0 0 0 2.1747425010840047 0 0.3054621874040891 0 PVSAT{M(Oxidation (M))|F} 5.7174 - 81 + NaN NaN 156466.2 NaN 12761 3505 16262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16270 70.056 NaN 448940 35 0 25793 0.327 -1 YNAPTDHGLCI 11 85 630.7878241196413 1259.5610953060825 2 630.7874145507812 MULTI HCD FTMS 0 0 0 16269 240064.390625 0.06251082253829893 36 -0.8985214233398438 1 Carbamidomethyl (C) _YNAPTDHGLC(Carbamidomethyl (C))I_ ENSG00000106070|ENST00000401949|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-4|GRB10 22.736283301280096 0.2589804299186601 2 [YN]CWVYY 7 -1 60.948 0 0 4.8388 0 0 0 265.13047205142817 265.13047205142817 32.020082085180945 0 0 0 0 1.524227503252014 1.6989700043360187 0 0 [YN]CWVYY 4.8388 - 1541 + NaN NaN 171542.1 NaN 12762 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16271 70.06 NaN 531990 35 0 112080 0.261 + 7806 FYPPKVELF 9 66 570.3107063408479 1138.6068597484957 2 570.310546875 MULTI HCD FTMS 0 0 0 16269 183098.78125 0.12481476413064975 20 -0.49268341064453125 2 Unmodified _FYPPKVELF_ ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS 29.081581746732265 0.1154664336125038 2 E{I|L}{M(Oxidation (M))|F} 3 6 26.911 0 0 2.3635 0 0 731.4220510746018 0 731.4220510746018 0 8.952424927286842 0 0 0 0.8494850021680094 0 0 0 + E{I|L}{M(Oxidation (M))|F} 2.3635 + + 43 NaN NaN 173933 NaN 12763 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16272 70.064 NaN 293520 35 0 32841 0.261 + 1180 AYLESFYKF 9 62 584.2894496602338 1166.5643463872675 2 584.2899780273438 MULTI HCD FTMS 0 0 0 16269 158702.703125 0.007312991205068263 91 -2.4114990234375 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 66.45667989310934 0.010234776021261575 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F} 9 0 + 91.533 0 0 7.8463 7.8463 95.784 0 0 0 24.13734275855269 75.73576872189598 24.13734275855269 35.17220322351953 0 2.805462187404089 1.6989700043360187 0.7614393726401688 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[ES]|[DT]|[{I|L}C]}Y[RH];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[ES]|[DT]|[{I|L}C]}[RN]W;[RH]Y{[QG]|[NA]}[MT]K{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YK]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[ES]|[DT]|[{I|L}C]};[RH]Y{[QG]|[NA]}[YK]{[ES]|[DT]|[{I|L}C]};[RH]{M(Oxidation (M))|F}[NS][MT]K{M(Oxidation (M))|F};[RH]{M(Oxidation (M))|F}[NS][YK]{[ES]|[DT]|[{I|L}C]};{[QN]|[E{I|L}]|[KN]}[WP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[ES]|[DT]|[{I|L}C]} 7.8463;4.8313;4.1653;4.0582;2.7237;2.3678;2.0611;1.8129;1.1503;0.93104 +;-;-;-;-;-;-;-;-;- + 204 NaN NaN 129017.1 NaN 12764 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16273 70.067 NaN 191400 35 0 16597 0.262 -1 LACALEVVM 9 52 482.74516033520706 963.4757677372141 2 482.74456787109375 MULTI HCD FTMS 0 0 0 16269 110542.8984375 0.8545267207133496 2 -0.0389862060546875 4 Oxidation (M) _LACALEVVM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 28.486842064014134 0.11819662193267319 2 N[QP]EVV{M(Oxidation (M))|F} 7 -1 52.039 0 0 5.4011 0 0 132.10488954509202 0 132.10488954509202 0 35.03160730965476 0 0 0 1.3494850021680094 0 0 0.3807196863200844 N[QP]EVV{M(Oxidation (M))|F} 5.4011 - 104 + NaN NaN 114780.4 NaN 12765 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16274 70.071 NaN 181220 35 0 13124 0.261 -1 FLSMCYCV 8 49 491.198270864154 NaN 0 490.78656005859375 PEAK HCD FTMS 0 0 0 16269 29039.986328125 0.20849900914236547 -6 0.11126708984375 5 Oxidation (M) _FLSM(Oxidation (M))CYCV_ ENSG00000111432|ENST00000229030|FZD10 2.8892196856762586 0.38822285293237185 2 V 1 -1 5.4846 0 0 0.55943 0 0 621.1617567167862 257.12937341861567 878.2911301354018 0 0 0 0 0 0 0 0 0 V 0.55943 + + 4 + NaN NaN 114946.6 NaN 12766 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16275 70.074 NaN 113620 35 0 7296.6 0.261 + 1883 CYAYAVVPF 9 42 516.7488403320312 NaN 0 516.7488403320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _CYAYAVVPF_ REV__ENSG00000116649|ENST00000376957|SRM 5.230669730166228 0.26989974671959066 2 P 1 -1 3.9794 0 0 0.38579 0 0 769.3510413068374 162.05587183170158 931.4069131385389 0 0 0 0 0 0 0 0 0 P 0.38579 + + 6 + NaN NaN 109739.8 NaN 12767 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16276 70.077 NaN 166060 35 0 17687 0.261 + 21089 PNELVDLTL 9 44 507.2791513137693 1012.5437496943387 2 507.2791748046875 MULTI HCD FTMS 0 0 0 16269 110816.2421875 0.18174855838693094 -11 0.2454071044921875 7 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 15.248480904072842 0.22861284681709862 2 D{I|L}T{I|L} 4 -1 38.928 0 0 3.8446 0 0 552.2911854474625 0 552.2911854474625 0 38.92790030352131 0 0 0 1 0 0 0 D{I|L}T{I|L} 3.8446 + + 8 NaN NaN 115513.6 NaN 12768 3506 16269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16278 70.082 NaN 922410 35 0 211180 0.327 + 24438 RYLDEINLL 9 85 574.8190799158277 1147.6236068984554 2 574.8196411132812 MULTI HCD FTMS 0 0 0 16277 411303.9375 0.02399351787456218 29 -0.7084426879882812 1 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 45.69961567697781 0.039180348357221985 2 [Y{I|L}]D{[RE]|[WV]}{I|L}N{I|L}{I|L} 9 2 + 58.367 0 0 5.0859 5.0859 83.132 0 0 0 1.5752217873205154 16.478174818886373 1.5752217873205154 1.5752217873205154 0 1.274227503252014 1.3010299956639813 0 0.5501648626366046 [Y{I|L}]D{[RE]|[WV]}{I|L}N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[QT]GY{I|L}N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YT]{[QG]|[NA]}{I|L}N{I|L}{I|L};[Y{I|L}]REEVN{I|L}{I|L};[Y{I|L}]D{[RE]|[WV]}{I|L}GG{I|L}{I|L};[Y{I|L}]{[QS]|[NT]}{[QG]|[NA]}{I|L}N{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}Y{[RE]|[WV]}{I|L}N{I|L}{I|L};[KA]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}GY{I|L}N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YT][QA]VN{I|L}{I|L};[Y{I|L}]REEVGG{I|L}{I|L} 5.0859;4.9487;4.6702;4.4573;4.2836;4.0611;3.9523;3.7198;3.6948;3.655 -;-;-;-;-;-;-;-;-;- 843 NaN NaN 235420.8 NaN 12769 3507 16277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16279 70.087 NaN 926920 35 0 186060 0.261 -1 FPANVMDVI 9 75 511.25485591142274 1020.4951588896455 2 511.2550964355469 MULTI HCD FTMS 0 0 0 16277 378112.3125 0.76306637348799 -2 0.0489044189453125 2 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 24.020572477871973 0.15282392193088168 2 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 -1 + 37.845 0 0 3.7085 3.7085 81.666 0 0 0 2.2184874961635614 5.4820995293722845 2.2184874961635614 2.2184874961635614 0 0.7059771852360797 1.2218487496163564 0 0.3494850021680094 [DV][WK]{M(Oxidation (M))|F}DV{I|L};{[TV]|[{I|L}S]}{[WT]|[RM]}{[MG]|[TS]}DV{I|L};[DV][WK]E[MT]{I|L};{[TV]|[{I|L}S]}{[WT]|[RM]}[C(Carbamidomethyl (C))R][QA];[DV][WK]E{I|L}[MT] 3.7085;3.4911;1.5967;0.7445;0.49171 -;-;-;-;- 627 NaN NaN 222107.5 NaN 12770 3507 16277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16280 70.09 NaN 154360 35 0 12069 0.261 -1 0 59 545.1813517278943 544.1740752612942 1 544.75634765625 MULTI HCD FTMS 0 0 0 16277 18776.1171875 0.11951142665536998 28 -0.675628662109375 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 2.2453 0 0 379.09486491148795 0 379.09486491148795 0 6.73393743112328 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.2453 - 5 + NaN NaN 106506.6 NaN 12771 3507 16277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16282 70.095 NaN 884990 35 0 125410 0.327 + 16932 LYGRLLVTF 9 102 541.3238669682104 1080.6331810032207 2 541.3240356445312 MULTI HCD FTMS 0 0 0 16281 211615.734375 0.25973578129811287 9 -0.22168731689453125 1 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 85.64151623876279 0.004640175941193596 2 [Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F} 9 2 + 76.889 0 0 7.1152 7.1152 88.848 0 0 0 7.257724967479859 7.727562184969372 7.257724967479859 7.257724967479859 0 2.1989700043360187 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]A[RV]{I|L}VT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}TV{M(Oxidation (M))|F};[Y{I|L}]A[RV]{I|L}S{I|L}{M(Oxidation (M))|F};[Y{I|L}]A[RV]V{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}TV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]{I|L}S{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[RV]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]A[RV]S{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]A[RV]VT{I|L}{M(Oxidation (M))|F} 7.1152;6.4436;6.2476;6.211;5.9324;5.576;5.5394;5.2608;5.1912;5.0282 -;-;-;-;-;-;-;-;-;- 2258 NaN NaN 239251.6 NaN 12772 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16283 70.099 NaN 818790 35 0 80603 0.261 + 4453 EYIHALTLL 9 72 536.8056750015584 1071.5967970699166 2 536.8056640625 MULTI HCD FTMS 0 0 0 16281 172209.546875 0.7516950189461549 1 -0.03609466552734375 2 Unmodified _EYIHALTLL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF 48.345845343767074 0.03388484103555672 2 QT{I|L}{I|L} 4 6 39.641 0 0 3.6993 0 0 598.324169740417 0 598.324169740417 0 19.173990416872222 0 0 0 0.8494850021680094 0 1 0 QT{I|L}{I|L} 3.6993 - 39 NaN NaN 226464.4 NaN 12773 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16284 70.103 NaN 414950 35 0 63905 0.261 -1 VPMEDINL 8 55 473.7311445069164 945.4477360806328 2 473.7310791015625 MULTI HCD FTMS 0 0 0 16281 196173.640625 0.6286013073387628 -1 0.01287841796875 3 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 50.855029805455786 0.12247309515496523 2 D{I|L}N{I|L} 4 -1 46.657 0 0 4.9349 0 0 472.2015553205094 0 472.2015553205094 0 30.414478256039672 0 0 0 0.75 0 0.7302046884880937 0.3807196863200844 D{I|L}N{I|L} 4.9349 + + 59 NaN NaN 163518 NaN 12774 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16285 70.106 NaN 496960 35 0 29637 0.261 + 4455 EYIIEYPHF 9 99 605.7923739723726 1209.5701950115451 2 605.7932739257812 MULTI HCD FTMS 0 0 0 16281 205087.421875 0.7354311117466193 -4 0.0745697021484375 4 Unmodified _EYIIEYPHF_ ENSG00000112992|ENST00000344920|NNT 85.35673624503755 0.00464763827098139 2 YE{I|L}{I|L}EYP{[{M(Oxidation (M))|F}H]|[RQ]} 9 2 + 54.892 0 0 4.5381 4.5381 89.311 0 0 0 26.66824957570212 1.4266750356873104 1.4266750356873104 21.723600879579855 0 1.200679860468595 1.3010299956639813 0.2742275032520141 0 YE{I|L}{I|L}EYP{[{M(Oxidation (M))|F}H]|[RQ]};YE{I|L}{I|L}[WD][PG]{[MS]|[{M(Oxidation (M))|F}A]};[YE]{I|L}{I|L}E[RD]{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YE]{I|L}{I|L}E[DG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YE]{I|L}{I|L}E{[RE]|[WV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YE]{I|L}{I|L}ET[PS]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};YE{I|L}[KG]GYY{[MS]|[{M(Oxidation (M))|F}A]};YQVKEYY{[MS]|[{M(Oxidation (M))|F}A]};[YE]{I|L}{I|L}[WD]V{[WS]|[C(Carbamidomethyl (C)){I|L}]};YYT[YT]KV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4.5381;2.7421;2.6995;2.634;2.5539;2.3953;2.2393;2.1236;1.9907;1.8678 -;-;-;-;-;-;-;-;-;- 4132 + NaN NaN 180884 NaN 12775 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16286 70.11 NaN 329810 35 0 27922 0.261 + 33061 YDFSFVPEFK 10 67 639.8051605804899 1277.5957682277797 2 640.7863159179688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YDFSFVPEFK_ REV__ENSG00000157224|ENST00000496677|CLDN12 5.296884461304476 0.4472664531305844 2 [YV][WH]WDMP 8 -1 40.891 0 0 3.2006 0 0 0 160.0935078671836 160.0935078671836 26.962724883926654 0 0 0 0 0 2 0 0 [YV][WH]WDMP 3.2006 - 692 NaN NaN 161417.9 NaN 12776 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16287 70.113 NaN 700080 35 0 103460 0.264 -1 MPDLPNVGL 9 73 486.2469580678931 970.4793632025862 2 486.2469787597656 MULTI HCD FTMS 0 0 0 16281 60099.90625 0.4013312482105757 4 -0.088287353515625 6 Oxidation (M) _M(Oxidation (M))PDLPNVGL_ ELP3-MYO5C|1|fusion;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3 18.1463463914782 0.20357593197100715 2 VG{I|L} 3 -1 29.055 0 0 2.9938 0 0 683.2964002133892 0 683.2964002133892 0 5.498037644757048 0 0 0 0.8252574989159953 0 0 0 VG{I|L} 2.9938 + + 104 NaN NaN 207312.2 NaN 12777 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16288 70.116 NaN 228250 35 0 16221 0.261 -1 NYAPAFTML 9 64 522.2461020252803 1042.4776511173604 2 522.2465209960938 MULTI HCD FTMS 0 0 0 16281 61393.79296875 0.5115499652355355 4 -0.088287353515625 7 Oxidation (M) _NYAPAFTM(Oxidation (M))L_ ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF 22.736283301280096 0.1639198954644489 2 PE 2 -1 21.836 0 0 2.0946 0 0 798.3571034162125 0 798.3571034162125 0 1.0391719390811716 0 0 0 0.3252574989159953 0 0 0 PE 2.0946 - 29 NaN NaN 121871.1 NaN 12778 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16289 70.12 NaN 221340 35 0 17304 0.261 -1 0 47 647.0507509290709 1938.1304233874125 3 646.8846435546875 MULTI HCD FTMS 0 0 0 16281 25732.951171875 0.3868041236023814 3 -0.07877349853515625 8 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.56596 0 0 777.5482162653265 897.3873545122105 1674.9355707775371 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.56596 - 10 + NaN NaN 119645.7 NaN 12779 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16290 70.123 NaN 210600 35 0 23646 0.262 -1 CSLLGMLWE 9 57 554.7612494658124 NaN 0 554.7581176757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))SLLGMLWE_ ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;PCDHGA9|p.G468Yfs*10|1|0.13|ENSG00000261934|chr5:141404350-141404351|CA/-|frameshift_variant 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 6.9897 0 0 0.63112 0 0 131.9511533961118 859.4504488580686 991.4016022541805 0 0 0 0 0 0 0 0 0 {I|L} 0.63112 + + 13 + NaN NaN 124556.3 NaN 12780 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16291 70.126 NaN 298390 35 0 19035 0.261 + 22967 QYVYWLHML 9 67 634.8102300217877 1267.6059071103753 2 634.809326171875 MULTI HCD FTMS 0 0 0 16281 83498.875 0.17252553276692714 -12 0.24825286865234375 10 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 40.44857923139169 0.06328554730241728 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 10 8 + 49.168 0 0 3.8788 3.8788 83.299 0 0 0 10.06929883703016 14.833749374444452 10.06929883703016 6.020599913279625 0 0.8252574989159953 1.5228787452803376 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VE{[NV]|[RG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PR{[DA]|[EG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]V{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VE[YG]RV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PE{[NV]|[RG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3.8788;3.4038;3.4038;2.6149;2.5164;2.5164;2.2385;2.2385;2.0635;1.9685 -;-;-;-;-;-;-;-;-;- 715 NaN NaN 150370.8 NaN 12781 3508 16281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16293 70.131 NaN 262570 35 0 15487 0.326 + 17121 LYLLAAGCLAL 11 61 560.8233612642656 1119.632169595331 2 560.8248291015625 MULTI HCD FTMS 0 0 0 16292 74557.9375 1 0 0 1 Unmodified _LYLLAAGCLAL_ REV__ENSG00000176022|ENST00000379198|B3GALT6 21.74664581756881 0.2676031737608615 2 [Y{I|L}]{I|L} 3 -1 34.309 0 0 3.0643 0 0 0 727.3782687987092 727.3782687987092 15.72559982972642 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.0643 + + 86 NaN NaN 127070.7 NaN 12782 3509 16292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16295 70.138 NaN 7321300 35 0 2190600 0.327 + 24586 RYLPDTLLL 9 82 552.3264929919228 1102.6384330506455 2 552.3269653320312 MULTI HCD FTMS 0 0 0 16294 3231543.25 0.5025956857290942 -2 0.043212890625 1 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 72.96794272382148 0.008127836904478181 2 [Y{I|L}]RPDT{I|L}{I|L}{I|L} 9 2 + 86.877 0 0 7.879 7.879 93.197 0 0 0 11.73393743112328 16.478174818886373 11.73393743112328 11.73393743112328 0 1.805462187404089 1.3979400086720375 1.1989700043360187 0 [Y{I|L}]RPDT{I|L}{I|L}{I|L};[YR]{I|L}PDT{I|L}{I|L}{I|L};[Y{I|L}]RPD{I|L}T{I|L}{I|L};[YR]{I|L}PD{I|L}T{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{I|L}]DT{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ[KG]T{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[R{I|L}]D{I|L}T{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KP][KG]ST{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AQ[KG]{I|L}T{I|L}{I|L};[YR]{I|L}PD{I|L}{I|L}T{I|L} 7.879;6.8148;6.4104;5.3463;4.3439;3.4577;2.8753;2.8043;1.9892;1.3452 -;+;-;-;-;-;-;-;-;- + 450 NaN NaN 645248.3 NaN 12783 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16296 70.142 NaN 3474800 35 0 268480 0.261 + 19821 NYAWVYYHL 9 100 614.7931119449629 1227.5716709567257 2 614.7921142578125 MULTI HCD FTMS 0 0 0 16294 1066217.875 0.016784221544106123 40 -1.0291519165039062 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 112.83 0 0 9.1915 9.1915 95.571 0 0 0 30.431825014007217 16.478174818886373 16.478174818886373 14.291746928241125 0 2.5994850021680094 1.6989700043360187 0 2.602568435936441 + + [YN]AWVYYH{I|L};[YN]AWVYHY{I|L};[YN]WAVYYH{I|L};[YN]AWVWNY{I|L};NYAWVYYH{I|L};[YN]WAVYHY{I|L};[YN]AWVWGGY{I|L};[YN]WAVWNY{I|L};{[WN]|[YH]}YAVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L} 9.1915;8.0273;7.8402;7.0277;6.7125;6.676;6.2776;5.6763;5.0503;4.9485 +;-;-;-;+;-;-;-;-;- + 2769 NaN NaN 625132.1 NaN 12784 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16297 70.146 NaN 1172300 35 0 258960 0.261 + 27455 SYVRSLPFF 9 98 558.2989435185425 1114.583334103885 2 558.2979736328125 MULTI HCD FTMS 0 0 0 16294 341448.46875 0.19975586544163423 6 -0.14598846435546875 3 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 93.16586880292088 0.00444300900000894 2 {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 78.827 0 0 7.0724 7.0724 88.776 0 0 0 4.137342758552691 57.03168034440628 4.137342758552691 7.257724967479859 0 2.9876954943324545 0 1.0356668758921828 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]SRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};NPTP{I|L}SRVMT;NPTP{I|L}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP];NP[{I|L}P][NG]{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{I|L}SRVMT;[YV]{M(Oxidation (M))|F}{I|L}SR[PS]{M(Oxidation (M))|F};NP[{I|L}P]V{[QG]|[NA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}{I|L}SRMVT;NPE[R{I|L}]RSP{M(Oxidation (M))|F} 7.0724;6.4212;6.1065;3.9866;3.9353;3.8407;3.6439;3.3962;2.8783;2.8249 +;-;-;-;-;-;-;-;-;- + 1244 NaN NaN 282124.6 NaN 12785 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16298 70.149 NaN 888370 35 0 144490 0.261 + 12807 KYEELFPAF 9 94 572.2897229524438 1142.5648929716874 2 572.2896728515625 MULTI HCD FTMS 0 0 0 16294 207714.46875 0.034058204770653154 -10 0.1934661865234375 4 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 38.175570920033316 0.07371992880350783 2 P{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}SPA{M(Oxidation (M))|F} 8 4 47.472 0 0 4.1549 0 0 236.1161937617391 0 236.1161937617391 0 26.217684876519485 0 0 0 1.305462187404089 0 0.3807196863200844 0 P{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}SPA{M(Oxidation (M))|F} 4.1549 - 427 + NaN NaN 225096.9 NaN 12786 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16299 70.152 NaN 1261200 35 0 133920 0.261 + 3058 EAFVWEPAM 9 95 548.2447103507094 1094.4748677682187 2 548.2446899414062 MULTI HCD FTMS 0 0 0 16294 208351.390625 0.7066482381712568 -2 0.043212890625 5 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 92.8221339359638 0.0044520161739443126 2 {[{M(Oxidation (M))|F}C]|[YS]}PVWEPA{M(Oxidation (M))|F} 9 3 + 61.981 0 0 5.6631 5.6631 84.451 0 0 0 3.148970110165237 44.99164096378802 3.148970110165237 2.4470267523251508 0 2.2931576817365436 0 1.1936726795685342 0 {[{M(Oxidation (M))|F}C]|[YS]}PVWEPA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PDW{I|L}PA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}VWEPA{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}{I|L}WEPA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}DW{I|L}PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PV{[DA]|[EG]}EPA{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}EWVP[MT];E{[CT]|[{M(Oxidation (M))|F}G]}EW{I|L}PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PD{[DA]|[EG]}{I|L}PA{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}{I|L}WDP[MT] 5.6631;5.4395;5.1943;5.0825;4.875;4.8218;4.8025;4.7632;4.5982;4.5789 -;-;+;-;-;-;-;-;-;- + 3104 NaN NaN 277009.4 NaN 12787 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16300 70.156 NaN 588000 35 0 222440 0.264 + 16455 LSRFLHFYF 9 54 410.55363153528367 1228.639065206051 3 410.5535888671875 MULTI HCD FTMS 0 0 0 16294 93300.8828125 0.17969323460410205 14 -0.37145233154296875 6 Unmodified _LSRFLHFYF_ REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|30|3|anti-sense 6.1918466704503565 0.30407824485930035 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.9462 0 0 753.4285477025534 0 753.4285477025534 0 29.20818753952375 0 0 0 1 0 0 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 2.9462 + + 15 NaN NaN 175306 NaN 12788 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16301 70.159 NaN 288710 35 0 32510 0.261 + 18536 MTPEDFVQ 8 65 483.7159456666984 965.4173384001969 2 483.7157287597656 MULTI HCD FTMS 0 0 0 16294 77185.3515625 0.4622999350703193 6 -0.14598846435546875 7 Unmodified _MTPEDFVQ_ ENSG00000115840|ENST00000422440|SLC25A12;SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant 12.531546534597751 0.5015908124873912 2 {M(Oxidation (M))|F}N{I|L} 3 7 26.682 0 0 2.7638 0 0 573.2103559894641 0 573.2103559894641 0 5.713337517843655 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}N{I|L} 2.7638 - 130 NaN NaN 124105 NaN 12789 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16302 70.162 NaN 329030 35 0 20067 0.261 + 295 AFMKGVFTF 9 70 524.2704981567848 1046.5264433803695 2 524.2703857421875 MULTI HCD FTMS 0 0 0 16294 56362.75 0.4778701224927562 1 -0.03556060791015625 8 Unmodified _AFMKGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 74.92900055777586 0.007493270374442853 2 {[MS]|[{M(Oxidation (M))|F}A]}M[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8 2 {[MS]|[{M(Oxidation (M))|F}A]} + + 54.43 3.7236 1.7073 5.201 5.201 62.606 0 0 0 0 47.44009708316895 0 0 0 2.1549471895720984 0 1.0484550065040281 0 {[MS]|[{M(Oxidation (M))|F}A]}M[RK]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.201 - 156 + NaN NaN 142174.2 NaN 12790 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16303 70.166 NaN 267330 35 0 28225 0.261 + 7691 FYLEGGFSKF 10 67 597.7948170205248 NaN 0 597.7947387695312 PEAK HCD FTMS 0 0 0 16294 13870.22265625 0.18197272461897612 4 -0.09038543701171875 9 Unmodified _FYLEGGFSKF_ ENSG00000139318|ENST00000279488|DUSP6 32.037481411007896 0.18312613804744385 2 {I|L}E 2 8 18.756 0 0 1.5714 0 0 310.13052484887174 638.2921846979124 948.4227095467841 0 0 0 0 0 1.079689690656103 0 0 0 + {I|L}E 1.5714 + + 46 + NaN NaN 134423.6 NaN 12791 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16304 70.169 NaN 108030 35 0 11551 0.262 -1 MAEEVVVVA 9 47 494.7545429672116 987.4945330012232 2 494.7542724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MAEEVVVVA_ ENSG00000158092|ENST00000481752|NCK1;ENST00000460960.1_1_3:136646843-136647104:+|nuORF;NCK1-STAG1|2|fusion 7.910154910731844 0.2910521888787154 2 VYYE{I|L}N 6 -1 33.148 0 0 3.3568 0 0 188.11612136054845 0 188.11612136054845 0 16.95046257204389 0 0 0 0.9247425010840047 0 0 0 VYYE{I|L}N 3.3568 - 49 NaN NaN 107743.7 NaN 12792 3510 16294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16306 70.174 NaN 3990700 35 0 455760 0.327 + 29427 TYTDRVFFL 9 105 581.3005218108478 1160.5864906884956 2 581.3009033203125 MULTI HCD FTMS 0 0 0 16305 2380937.5 0.5476129280063295 2 -0.0386810302734375 1 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 133.0521902211835 0.0004198702180815479 2 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 108.67 0 0 9.363 9.363 94.869 0 0 0 22.06196005612803 91.14258696564022 22.06196005612803 11.02059991327961 0 2.8494850021680094 1.6989700043360187 2.1120155761587904 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT][RD]TV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TDRV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}V;[YT][RD]TV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][RD]T{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L} 9.363;8.4135;8.1931;7.2435;7.1365;7.0231;6.9265;6.2494;6.1869;5.9665 +;-;-;-;-;-;-;-;-;- + 3276 NaN NaN 481663.8 NaN 12793 3511 16305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16307 70.178 NaN 379030 35 0 22376 0.261 + 5846 FPDEFHLQTL 10 82 623.8085109557719 1245.6024689783437 2 623.808349609375 MULTI HCD FTMS 0 0 0 16305 144417.546875 0.374842644915111 -6 0.14055633544921875 2 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 78.06048673739656 0.008034375046376557 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L} 10 0 + 68.65 0 0 5.5114 5.5114 85.101 0 0 0 15.853481135844874 39.63560197082276 15.853481135844874 4.771212547196626 0 1.774227503252014 1.0969100130080565 0.5 0.3054621874040891 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]{M(Oxidation (M))|F}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[AG]T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]Q{M(Oxidation (M))|F}T{I|L};[DP]{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]{M(Oxidation (M))|F}[AG]T{I|L};[DP]{M(Oxidation (M))|F}E[H{I|L}]{M(Oxidation (M))|F}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{[NV]|[RG]}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}][AG]{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]QT{M(Oxidation (M))|F}{I|L} 5.5114;5.1284;4.7757;4.5457;4.1895;4.1474;3.8064;3.6216;3.5647;3.516 +;-;-;-;-;-;-;-;-;- + 722 NaN NaN 145812.2 NaN 12794 3511 16305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16309 70.183 NaN 1285600 35 0 83332 0.327 + 32188 VYTDFAFRI 9 102 566.2955546601535 1130.5765563871068 2 566.2958374023438 MULTI HCD FTMS 0 0 0 16308 367760.25 0.6156937898171647 3 -0.07807159423828125 1 Unmodified _VYTDFAFRI_ ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF 125.52916310638031 0.0008761121089336018 2 [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L} 9 0 + 96.667 0 0 8.5502 8.5502 93.786 0 0 0 14.30909368620867 74.98441900057003 14.30909368620867 9.930380486862944 0 2.8494850021680094 1.6989700043360187 1.860924374808178 0 + + [YV]TD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]TD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};[YT]VD{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}A{M(Oxidation (M))|F}R{I|L};[YV]TA{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}R{I|L};[YT]VD{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}AR{M(Oxidation (M))|F}{I|L};[YV]TA{[{M(Oxidation (M))|F}D]|MM}R{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F}A{M(Oxidation (M))|F}R{I|L};{[CT]|[{M(Oxidation (M))|F}G]}HH{M(Oxidation (M))|F}AR{M(Oxidation (M))|F}{I|L} 8.5502;7.6719;5.987;5.8741;5.7607;5.1086;4.9957;4.8824;4.1525;3.2741 +;-;-;-;-;-;-;-;-;- + 2036 NaN NaN 280155.4 NaN 12795 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16310 70.187 NaN 632800 35 0 34949 0.261 + 22933 QYSYIDFKF 9 106 605.7923739723726 1209.5701950115451 2 605.7930908203125 MULTI HCD FTMS 0 0 0 16308 278866.9375 1 0 0 2 Unmodified _QYSYIDFKF_ ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|1|fusion;RNF216-MTHFD1L|2|fusion 45.739877483867886 0.03899552410870734 2 [YQ]SY{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 0 + 47.346 0 0 3.9143 3.9143 84.2 0 0 0 19.387364529619493 4.762036441594191 4.762036441594191 8.027194418743804 0 0.9476212463643423 1.154901959985743 0 0 + + [YQ]SY{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[HG]|PP}PSY{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YQ]V[YT]D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YT][YK]{I|L}YS{[WS]|[C(Carbamidomethyl (C)){I|L}]};YY[KT]{I|L}YS{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YN]TY{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[HG]|PP}PV[YT]D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YN]YT{I|L}D{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YQ]VD[YT]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YQ]SA{I|L}{M(Oxidation (M))|F}[QP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.9143;3.2507;2.6479;2.4628;2.3922;2.2936;1.9843;1.8991;1.859;1.8074 +;-;-;-;-;-;-;-;-;- + 4059 + NaN NaN 197058.3 NaN 12796 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16311 70.191 NaN 791610 35 0 54029 0.261 + 16848 LYEHNFAFF 9 91 594.2806410734136 1186.546729213627 2 594.267822265625 MULTI HCD FTMS 0 0 0 16308 105361.859375 0.5746206042517684 3 -0.07807159423828125 3 Unmodified _LYEHNFAFF_ ENSG00000060642|ENST00000674202|PIGV 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F} 9 7 + 23.992 0 0 2.022 2.022 85.911 0 0 0 1.5444756444762255 4.563631030611575 1.5444756444762255 12.256499699645861 0 0.3494850021680094 0 1.5356668758921828 0 {M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]{M(Oxidation (M))|F}G{[ET]|[MV]};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[QA]{M(Oxidation (M))|F}{[WT]|[RM]};{[WT]|[RM]}[WP][C(Carbamidomethyl (C))K]Y{M(Oxidation (M))|F};{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D[RN]T{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}{[WN]|[YH]}{[SA]|[TG]}Y{I|L} 2.022;0.98903;0.94592;0.91774;0.82123;0.10157 -;-;-;-;-;- 348 + NaN NaN 215200.5 NaN 12797 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16312 70.194 NaN 447920 35 0 26611 0.261 + 6052 FPDWREDVL 9 92 588.7880405952984 1175.5615282573967 2 588.7885131835938 MULTI HCD FTMS 0 0 0 16308 191739.9375 0.613216610846968 -8 0.1628570556640625 4 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 26.020703789607367 0.13554323117744113 2 TRT[RH]DPE 8 7 41.424 0 0 3.5238 0 0 165.07835585761876 0 165.07835585761876 0 10.506733072450828 0 0 0 0.9194451763165201 0 0.25 0 TRT[RH]DPE 3.5238 - 828 NaN NaN 160048.9 NaN 12798 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16313 70.198 NaN 454370 35 0 35738 0.261 + 16702 LYAADSFSCLL 11 79 630.3021038455732 1258.5896547579464 2 630.7880859375 MULTI HCD FTMS 0 0 0 16308 86892.1640625 0.8689106434746685 -4 0.088287353515625 5 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 41.8396318013385 0.12510225336016262 2 [Y{I|L}]C[KS]MWC{I|L}{I|L} 10 -1 + 50.895 0 0 4.0438 4.0438 83.11 0 0 0 3.0444970792913395 17.66334779402399 3.0444970792913395 5 0 1.274227503252014 0 1.1989700043360187 0 [Y{I|L}]C[KS]MWC{I|L}{I|L};[MT]{M(Oxidation (M))|F}[KS]MWC{I|L}{I|L};[MT][KA]YMWC{I|L}{I|L};[YN]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q[{M(Oxidation (M))|F}V]SE{I|L};[Y{I|L}]C[WK]{[MS]|[{M(Oxidation (M))|F}A]}C{I|L}{I|L};[YN]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q{NN|[MP]|[D{I|L}]|[EV]}AY{I|L};[MT]{M(Oxidation (M))|F}[WK]{[MS]|[{M(Oxidation (M))|F}A]}C{I|L}{I|L};[Y{I|L}]C[KS]V{[MS]|[{M(Oxidation (M))|F}A]}SE{I|L};[Y{I|L}]C[KS]M[VS]SE{I|L};[MT]{M(Oxidation (M))|F}[KS]V{[MS]|[{M(Oxidation (M))|F}A]}SE{I|L} 4.0438;3.6466;3.449;3.264;3.0324;2.6701;2.6351;2.5211;2.282;2.1239 -;-;-;-;-;-;-;-;-;- 2016 NaN NaN 164076.7 NaN 12799 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16314 70.201 NaN 229430 35 0 63396 0.261 -1 MPDQFDQAVVL 11 51 639.8051605804899 1277.5957682277797 2 639.8052978515625 MULTI HCD FTMS 0 0 0 16308 128436.40625 1 0 0 6 Oxidation (M) _M(Oxidation (M))PDQFDQAVVL_ ENSG00000145555|ENST00000513610|MYO10;ENST00000511972.1_1_5:16710938-16713441:-|nuORF;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10 4.189502756095605 0.4005469306127019 2 VV{I|L} 3 -1 31.198 0 0 2.4419 0 0 948.3665638654312 0 948.3665638654312 0 25.713337517843655 0 0 0 0.5 0 0 0 VV{I|L} 2.4419 + + 6 NaN NaN 125028.1 NaN 12800 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16315 70.204 NaN 277180 35 0 22625 0.261 + 1181 AYLESFYKF 9 82 584.2894496602338 1166.5643463872675 2 584.2899780273438 MULTI HCD FTMS 0 0 0 16308 171491.640625 0.007902303079523254 97 -2.6480865478515625 7 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 66.45667989310934 0.010234776021261575 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F} 9 0 + 80.952 0 0 6.9394 6.9394 92.125 0 0 0 24.13734275855269 66.687522094009 24.13734275855269 14.030899869919438 0 2.7302046884880937 2 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{[CP]|[EA]}YK{M(Oxidation (M))|F};[Y{I|L}]AE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[YK]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{[{M(Oxidation (M))|F}C]|[YS]}Q{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E[DV]E{I|L}{[ES]|[DT]|[{I|L}C]};[Y{I|L}]AY{[CP]|[EA]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QQ{[TV]|[{I|L}S]}E{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{[{M(Oxidation (M))|F}C]|[YS]}[AG]{I|L}{M(Oxidation (M))|F} 6.9394;5.7366;4.5383;4.0998;3.54;3.4833;3.3355;2.9267;2.897;2.7507 +;-;-;-;-;-;-;-;-;- + 486 NaN NaN 145861.7 NaN 12801 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16316 70.208 NaN 271040 35 0 45387 0.261 + 2778 DYDPLVVKL 9 59 531.2975842572934 1060.5806155813866 2 531.2980346679688 MULTI HCD FTMS 0 0 0 16308 140499.90625 1 0 0 8 Unmodified _DYDPLVVKL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF 66.45667989310934 0.010234776021261575 2 {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VVK{I|L} 9 0 + 75.811 0 0 7.1481 7.1481 95.691 0 0 0 12.104093769761874 12.104093769761874 12.104093769761874 75.81092497698137 0 2.274227503252014 1.6989700043360187 0.6747425010840047 0 + + {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VVK{I|L} 7.1481 + + 68 NaN NaN 135528.9 NaN 12802 3512 16308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16318 70.212 NaN 350060 35 0 80529 0.327 + 1053 AYGLVSATF 9 47 464.742274081106 927.469995229012 2 464.74237060546875 MULTI HCD FTMS 0 0 0 16317 81546.328125 0.2215977239353642 1 -0.016143798828125 1 Unmodified _AYGLVSATF_ ENSG00000156875|ENST00000370152|MFSD14A 64.23631603340823 0.01165516075559909 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}VSAT{M(Oxidation (M))|F} 9 0 + 69.816 0 0 7.5276 7.5276 94.318 0 0 0 10.263480968738463 69.81607495530127 10.263480968738463 21.977437731477423 0 2.3494850021680094 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}VSAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[VA]|[{I|L}G]}V[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA][{I|L}A]AT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP][KT]T{M(Oxidation (M))|F} 7.5276;5.158;4.5088;3.0278 +;-;-;- + 103 NaN NaN 138483 NaN 12803 3513 16317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16319 70.217 NaN 1099900 35 0 147590 0.261 + 33939 YLRVVEPP 8 81 486.77917210387056 971.5437912745411 2 486.7793273925781 MULTI HCD FTMS 0 0 0 16317 60972.015625 0.41710052631803973 1 -0.016143798828125 2 Unmodified _YLRVVEPP_ REV__ENSG00000214491|ENST00000402034|SEC14L6 25.399314129420986 0.40691472774782006 2 {I|L}YR{I|L}{I|L}T 6 -1 65.345 0 0 6.7259 0 0 0 209.05669580631096 209.05669580631096 41.35512976221092 0 0 0 0 2.004432191740108 2 1.0941876774005248 0 {I|L}YR{I|L}{I|L}T 6.7259 - 312 + NaN NaN 255926.6 NaN 12804 3513 16317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16320 70.22 NaN 358910 35 0 28057 0.261 -1 FLSMCYCV 8 61 491.198270864154 NaN 0 491.1983947753906 PEAK HCD FTMS 0 0 0 16317 45929.98046875 0.3297644602672539 1 -0.016143798828125 3 Oxidation (M) _FLSM(Oxidation (M))CYCV_ ENSG00000111432|ENST00000229030|FZD10 2.8892196856762586 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.71296 0 0 621.1616956816299 257.1289461725219 878.2906418541518 0 0 0 0 0 0 0 0 0 V 0.71296 + + 4 + NaN NaN 149988.2 NaN 12805 3513 16317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16321 70.224 NaN 247150 35 0 16824 0.261 + -1 LCEETVCR 8 68 533.7349746828697 1065.4553964325394 2 533.736328125 MULTI HCD FTMS 0 0 0 16317 24742.447265625 0.22822612655110344 -4 0.08135986328125 4 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))EETVC(Carbamidomethyl (C))R_ REV__ENSG00000260458|ENST00000567955|KCNJ18 5.230669730166228 0.5342319408533849 2 YC(Carbamidomethyl (C))R 3 -1 23.188 0 0 2.1763 0 0 568.2523060529312 0 568.2523060529312 0 8.58349385648225 0 0 0 0 0 0 0 YC(Carbamidomethyl (C))R 2.1763 - 85 NaN NaN 131175.6 NaN 12806 3513 16317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16323 70.229 NaN 901190 35 0 170310 0.327 -1 FPANVMDVI 9 79 511.25485591142274 1020.4951588896455 2 511.25518798828125 MULTI HCD FTMS 0 0 0 16322 336297.5625 0.6786802570194687 5 -0.15372467041015625 1 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 24.020572477871973 0.15282392193088168 2 W{I|L}Y{M(Oxidation (M))|F}ES{I|L} 7 -1 40.539 0 0 3.9724 0 0 64.01565531743525 0 64.01565531743525 0 -3.38090859114196 -3.38090859114196 0 0 1.1549471895720984 0 0.6549471895720985 0 W{I|L}Y{M(Oxidation (M))|F}ES{I|L} 3.9724 - 943 + NaN NaN 227466.3 NaN 12807 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16324 70.233 NaN 616660 35 0 90327 0.261 + 21090 PNELVDLTL 9 56 507.2791513137693 1012.5437496943387 2 507.27947998046875 MULTI HCD FTMS 0 0 0 16322 205012.671875 0.3362391363288543 -3 0.0548248291015625 2 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 31.26834338654808 0.10542797264966089 2 D{I|L}T{I|L} 4 -1 51.186 0 0 5.0552 0 0 552.2906415682767 0 552.2906415682767 0 32.40031912114908 0 0 0 1.5 0 0.4247425010840047 0 D{I|L}T{I|L} 5.0552 + + 30 NaN NaN 183444.7 NaN 12808 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16325 70.237 NaN 631490 35 0 126210 0.261 + 24439 RYLDEINLL 9 87 574.8190799158277 1147.6236068984554 2 574.8196411132812 MULTI HCD FTMS 0 0 0 16322 254895.046875 0.014869366193054442 36 -0.9387664794921875 3 Unmodified _RYLDEINLL_ ENSG00000060558|ENST00000262958|GNA15 45.739877483867886 0.03899552410870734 2 DE{I|L}N{I|L}{I|L} 6 3 65.706 0 0 5.7254 0 0 432.2474842755875 0 432.2474842755875 0 56.96562771545821 0 0 0 1.774227503252014 0 0.3807196863200844 0 + DE{I|L}N{I|L}{I|L} 5.7254 + + 248 NaN NaN 206574.7 NaN 12809 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16326 70.24 NaN 211940 35 0 31139 0.262 -1 VPMEDINL 8 45 473.7311445069164 945.4477360806328 2 473.73089599609375 MULTI HCD FTMS 0 0 0 16322 114245.9921875 0.36607966196924724 5 -0.15372467041015625 4 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 36.04419817259434 0.28174663821216267 2 {I|L}N{I|L} 3 -1 37.747 0 0 3.9925 0 0 587.2254170421637 0 587.2254170421637 0 27.289784572998173 0 0 0 0.805462187404089 0 0 0.3494850021680094 {I|L}N{I|L} 3.9925 + + 14 NaN NaN 134567.7 NaN 12810 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16327 70.243 NaN 337970 35 0 81941 0.261 + 15987 LPQPSSIVL 9 51 477.28691321697625 952.5592735007525 2 477.2872314453125 MULTI HCD FTMS 0 0 0 16322 157557.40625 0.27262566032210234 -3 0.0548248291015625 5 Unmodified _LPQPSSIVL_ ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF 24.990960013464015 0.14443998892849796 2 S{I|L}V{I|L} 4 5 29.527 0 0 3.0997 0 0 522.2794056623062 0 522.2794056623062 0 12.537144051603093 0 0 0 0.75 0 0 0 + S{I|L}V{I|L} 3.0997 + + 33 NaN NaN 150273.8 NaN 12811 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16328 70.247 NaN 279270 35 0 31939 0.261 + 16933 LYGRLLVTF 9 69 541.3238669682104 1080.6331810032207 2 541.32373046875 MULTI HCD FTMS 0 0 0 16322 76373.6171875 0.09374048290570687 15 -0.3886871337890625 6 Unmodified _LYGRLLVTF_ ENSG00000132740|ENST00000255078|IGHMBP2 41.8396318013385 0.056899836730939755 2 {I|L}VT{M(Oxidation (M))|F} 4 5 46.542 0 0 4.3069 0 0 602.3453452188184 0 602.3453452188184 0 33.44335023848103 0 0 0 1.3494850021680094 0 0.3494850021680094 0 + {I|L}VT{M(Oxidation (M))|F} 4.3069 + + 91 NaN NaN 133876 NaN 12812 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16329 70.25 NaN 185180 35 0 10465 0.261 + 34542 YPIIGLSFIS 10 54 555.3154887263554 1108.6164245195107 2 555.3160400390625 MULTI HCD FTMS 0 0 0 16322 44769.3828125 0.7898958334769178 -3 0.0548248291015625 7 Unmodified _YPIIGLSFIS_ REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1 8.745405648335112 0.42901288225909884 2 YP{I|L} 3 -1 23.812 0 0 2.1479 0 0 0 732.3967379205686 732.3967379205686 11.607281392838827 0 0 0 0 0 0 0 0 YP{I|L} 2.1479 + + 25 + NaN NaN 135208.9 NaN 12813 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16330 70.253 NaN 132410 35 0 14781 0.261 + 5584 FLPEAPAEL 9 46 493.7639896973028 NaN 0 493.7640380859375 PEAK HCD FTMS 0 0 0 16322 8938.6533203125 0.2490649568589821 1 -0.0327606201171875 8 Unmodified _FLPEAPAEL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 10.073929032068715 0.24642998803896465 2 {I|L}EV 3 7 13.188 0 0 1.3381 0 0 130.08118876784937 511.2164400690062 641.2976288368556 0 0 0 0 0 0 0 0 0 {I|L}EV 1.3381 - 17 + NaN NaN 112714.9 NaN 12814 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16331 70.256 NaN 76601 35 0 5829.7 0.261 + 3609 EKNHIKKHQK 10 33 645.3777208553327 NaN 0 645.0698852539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _EKNHIKKHQK_ REV__ENSG00000198298|ENST00000361807|ZNF485;REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485 1.3295316138638542 0.339046394236575 2 K 1 -1 3.9794 0 0 0.30878 0 0 534.9105187596903 622.7050786027661 1157.6155973624564 0 0 0 0 0 0 0 0 0 K 0.30878 + + 1 + NaN NaN 97992.1 NaN 12815 3514 16322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16333 70.261 NaN 424670 35 0 43925 0.327 + -1 LYAADSFSCLL 11 87 630.3021038455732 1258.5896547579464 2 630.3026123046875 MULTI HCD FTMS 0 0 0 16332 143995.25 0.8379864057317397 3 -0.08815765380859375 1 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 39.94969957227396 0.1372740116928318 2 [YN]A[{M(Oxidation (M))|F}T]D{[DS]|[MA]|[CV]|TT}T{I|L}{I|L} 11 -1 + 59.231 0 0 4.7062 4.7062 83.167 0 0 0 13.965690939490578 16.131685865887953 13.965690939490578 3.0102999566398125 0 0.7059771852360797 1.6989700043360187 0.9247425010840047 0.3494850021680094 [YN]A[{M(Oxidation (M))|F}T]D{[DS]|[MA]|[CV]|TT}T{I|L}{I|L};[YN]A[{M(Oxidation (M))|F}T]D{I|L}[CS]{I|L}{I|L};[YN]A[{M(Oxidation (M))|F}T]D{I|L}[VG]{M(Oxidation (M))|F}{I|L};[YN][DP]{I|L}QYS{M(Oxidation (M))|F}{I|L};[YN][DP]{I|L}QYAY{I|L};[YN][DP]{I|L}Q{M(Oxidation (M))|F}SY{I|L};[YN][DP]{I|L}[AG]YS{M(Oxidation (M))|F}{I|L};[YN][DP]{I|L}[AG]YAY{I|L};[YN]AW[VP]MK[HN];[YN][DP]{I|L}[AG]{M(Oxidation (M))|F}SY{I|L} 4.7062;4.467;3.3486;3.1469;2.9077;2.7678;2.4187;2.1796;2.1227;2.0397 -;-;-;-;-;-;-;-;-;- 1703 NaN NaN 159919.2 NaN 12816 3515 16332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16334 70.266 NaN 246650 35 0 20890 0.261 + 1686 CFRNKFYNI 9 64 602.7989607478718 NaN 0 602.7857055664062 PEAK HCD FTMS 0 0 0 16332 23346.59765625 0.4214424138089326 -2 0.0489044189453125 2 Unmodified _CFRNKFYNI_ REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF 13.90604991867851 0.22786006501039813 2 DR{M(Oxidation (M))|F}{I|L}DQ 6 -1 22.16 0 0 1.8412 0 0 165.10900592515128 261.0874117486938 426.1964176738451 0 0 0 0 0 0 0 0.3054621874040891 0 DR{M(Oxidation (M))|F}{I|L}DQ 1.8412 - 261 + NaN NaN 123611.2 NaN 12817 3515 16332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16335 70.269 NaN 899960 35 0 113790 0.262 + 10961 IYDPLRPV 8 76 486.77917210387056 971.5437912745411 2 486.77880859375 MULTI HCD FTMS 0 0 0 16332 56298.21875 0.38512777428609296 3 -0.08815765380859375 3 Unmodified _IYDPLRPV_ REV__ENSG00000070423|ENST00000292363|RNF126;REV__ENST00000591394.2_1_19:651609-663133:-|nuORF;REV__ENST00000592626.3_1_19:652824-663133:-|nuORF;REV__RNF126-PRSS57|1|fusion 28.486842064014134 0.3788298654084067 2 {I|L}YR{I|L}{I|L}T 6 -1 70.099 0 0 7.2152 0 0 0 209.05657373599846 209.05657373599846 45.07515625508539 0 0 0 0 1.8539171939081172 2 1.066901560044258 0 {I|L}YR{I|L}{I|L}T 7.2152 - 255 + NaN NaN 217870.3 NaN 12818 3515 16332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16336 70.273 NaN 370890 35 0 41227 0.261 + 35255 YVRDNCHPFK 10 69 639.8051605804899 1277.5957682277797 2 640.7861328125 MULTI HCD FTMS 0 0 0 16332 32155.1015625 0.8724247342517578 4 -0.12096405029296875 4 Unmodified _YVRDNCHPFK_ ENSG00000163626|ENST00000507544|COX18;ENST00000449739.6_1_4:73923833-73935428:-|nuORF;nc|ENSG00000163626|Q8N8Q8|COX18 6.723162845929126 0.4397169348982109 2 [YV][WH]WDMP 8 7 33.109 0 0 2.5915 0 0 0 160.09573733706307 160.09573733706307 22.140012553530966 0 0 0 0 0 2 0 0 [YV][WH]WDMP 2.5915 - 210 NaN NaN 151515.9 NaN 12819 3515 16332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16337 70.276 NaN 386750 35 0 36563 0.263 + 26213 SPSYPEISF 9 64 513.7419931321637 1025.4694333311272 2 513.7426147460938 MULTI HCD FTMS 0 0 0 16332 109234.421875 0.2779003526323802 -5 0.12314605712890625 5 Unmodified _SPSYPEISF_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF 46.020951573049366 0.037705236580089195 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}[EP]{I|L}S{M(Oxidation (M))|F} 9 3 + 59.727 0 0 5.8244 5.8244 91.935 0 0 0 14.281666230911583 52.73727878127538 14.281666230911583 29.316271552006654 0 2 1.154901959985743 0.805462187404089 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}[EP]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR][YG]S{M(Oxidation (M))|F} 5.8244;2.9655 -;- 85 NaN NaN 168401 NaN 12820 3515 16332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16338 70.279 NaN 115260 35 0 7339.6 0.261 + 33561 YILFKLKRKL 10 60 441.29760128522776 NaN 0 441.6171875 PEAK HCD FTMS 0 0 0 16332 28225.4765625 0.8676282308942889 2 -0.055328369140625 6 Unmodified _YILFKLKRKL_ REV__ENSG00000169592|ENST00000563197|INO80E;REV__ENST00000380503.7_1_16:30007553-30007939:+|nuORF;REV__ENST00000563040.5_1_16:30007580-30010601:+|nuORF;REV__ENST00000568043.5_1_16:30007580-30007859:+|nuORF;REV__nc|ENSG00000169592|Q8NBZ0-2|INO80E 0.776531954647913 0.3395196853010637 2 T 1 -1 6.9897 0 0 0.79376 0 0 112.21640526810434 664.2971895807249 776.5135948488293 0 0 0 0 0 0 0 0 0 T 0.79376 - 10 + NaN NaN 116933.5 NaN 12821 3515 16332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16340 70.284 NaN 5009600 35 0 1494400 0.327 + 24587 RYLPDTLLL 9 83 552.3264929919228 1102.6384330506455 2 552.3269653320312 MULTI HCD FTMS 0 0 0 16339 2863420 0.445342187027948 4 -0.12091827392578125 1 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 72.96794272382148 0.008127836904478181 2 [Y{I|L}]RPDT{I|L}{I|L}{I|L} 9 2 + 92.106 0 0 8.3532 8.3532 94.444 0 0 0 13.494850021680094 16.478174818886373 13.494850021680094 13.494850021680094 0 1.805462187404089 1.5228787452803376 1.1989700043360187 0 [Y{I|L}]RPDT{I|L}{I|L}{I|L};[YR]{I|L}PDT{I|L}{I|L}{I|L};[Y{I|L}]R{I|L}[{I|L}T][DP]{I|L};[DP][KQ]{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}{I|L};[Y{I|L}]R{I|L}{I|L}{I|L}T[DP];[Y{I|L}]R{I|L}[{I|L}T]{I|L}[DP];[YR]{I|L}{I|L}[{I|L}T][DP]{I|L};[YR]{I|L}PD{I|L}{I|L}T{I|L};[DP][KQ]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}Y{I|L};[YR]{I|L}{I|L}{I|L}{I|L}T[DP] 8.3532;7.1294;2.9175;2.0702;1.8873;1.8265;1.6936;1.2586;0.79879;0.6634 -;+;-;-;-;-;-;-;-;- + 601 NaN NaN 603890.4 NaN 12822 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16341 70.289 NaN 4887400 35 0 1280200 0.239 + 12808 KYEELFPAF 9 96 572.2897229524438 1142.5648929716874 2 572.2901000976562 MULTI HCD FTMS 0 0 0 16339 2958469.5 0.48508975154737194 -4 0.10091400146484375 2 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 118.0683919894846 0.0016252157255221692 2 [VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 10 4 + 107.3 0 0 9.3911 9.3911 90.647 0 0 0 3.5387196432176182 10.324156857539961 3.5387196432176182 3.5387196432176182 0 2.3494850021680094 0 2.809894379144197 0 [VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]SSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YK]EE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YE]KE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};KYEE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SNK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SE{I|L}[WY]{I|L};[{M(Oxidation (M))|F}V]SSNK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F} 9.3911;9.0814;9.0321;8.2428;8.2212;8.187;7.9115;6.0615;5.8655;5.7518 -;-;+;-;-;+;-;-;-;- + 2416 NaN NaN 725283.1 NaN 12823 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16342 70.292 NaN 2364600 35 0 205930 0.261 + 19822 NYAWVYYHL 9 83 614.7931119449629 1227.5716709567257 2 614.7927856445312 MULTI HCD FTMS 0 0 0 16339 1083931.5 0.017063066434367617 46 -1.214263916015625 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 113.02 0 0 9.2066 9.2066 96.052 0 0 0 29.846368802282015 16.478174818886373 16.478174818886373 16.588709367037282 0 2.555462187404089 1.6989700043360187 0 2.5400990676322905 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]WAVW[YN]{I|L};{[WN]|[YH]}YAVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YVNYYH{I|L};NYA[{M(Oxidation (M))|F}V]VN[NG][KC] 9.2066;7.8552;6.7752;6.6005;5.2492;5.0653;4.7312;3.9811;3.6922;3.645 +;-;+;-;-;-;-;-;-;- + 1527 NaN NaN 444013.1 NaN 12824 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16343 70.295 NaN 585770 35 0 49217 0.261 -1 LCFASVTVPKM 11 76 634.8248311089933 NaN 0 634.8104248046875 PEAK HCD FTMS 0 0 0 16339 15547.095703125 0.45845215388246446 -3 0.071746826171875 4 Carbamidomethyl (C),Oxidation (M) _LC(Carbamidomethyl (C))FASVTVPKM(Oxidation (M))_ ENSG00000165204|ENST00000277309|OR1K1 17.11289562659939 0.27893181706115244 2 C(Carbamidomethyl (C))VYW{I|L}H 6 -1 31.771 0 0 2.5063 0 0 131.12196356718147 275.10639368228755 406.228357249469 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C))VYW{I|L}H 2.5063 - 821 + NaN NaN 179800.7 NaN 12825 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16344 70.298 NaN 442500 35 0 95156 0.261 + 27456 SYVRSLPFF 9 70 558.2989435185425 1114.583334103885 2 558.2979736328125 MULTI HCD FTMS 0 0 0 16339 178751.15625 0.1045738821032904 12 -0.320220947265625 5 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 53.40400417844725 0.026808823219830042 2 {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 50.485 0 0 4.5295 4.5295 90.841 0 0 0 4.567490208862353 36.76985621489237 4.567490208862353 50.48509055574385 0 2.242992819099939 0 0.3494850021680094 0 + + {[{M(Oxidation (M))|F}C]|[YS]}VRS{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5295 + + 116 NaN NaN 169316.6 NaN 12826 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16345 70.302 NaN 309430 35 0 22124 0.261 + 7851 FYSNIQTVI 9 68 542.7879212042014 1083.5612894752028 2 542.7872314453125 MULTI HCD FTMS 0 0 0 16339 126891.859375 0.5332388908003561 -1 0.0228424072265625 6 Unmodified _FYSNIQTVI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 31.26834338654808 0.10542797264966089 2 QTV{I|L} 4 5 49.315 0 0 4.5512 0 0 624.2905703504194 0 624.2905703504194 0 31.356355030044924 0 0 0 1 0 0.7134679910804405 0.3252574989159953 + QTV{I|L} 4.5512 + + 49 NaN NaN 133165.7 NaN 12827 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16346 70.305 NaN 414030 35 0 66517 0.261 + 9653 HVDQDGLELL 10 53 569.7896034843803 1137.5646540355606 2 569.7897338867188 MULTI HCD FTMS 0 0 0 16339 79968.109375 0.729862763880374 1 -0.0324859619140625 7 Unmodified _HVDQDGLELL_ nc|ENSG00000162924|Q04864|REL 11.494710602746466 0.4035943721457025 2 {I|L}{I|L} 2 8 25.969 0 0 2.2829 0 0 893.384744768371 0 893.384744768371 0 17.01667520279372 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2829 + + 9 NaN NaN 151765 NaN 12828 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16347 70.308 NaN 502730 35 0 107600 0.261 + 16270 LQKKTLKVIY 10 71 617.3990772392748 NaN 0 617.412353515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LQKKTLKVIY_ ENST00000277541.6_1_9:139388956-139389136:-|nuORF 1.4819007175156935 0.33891598740166873 2 {M(Oxidation (M))|F} 1 10 6.9897 0 0 0.56699 0 0 166.24429869775832 916.4419486832159 1082.6862473809742 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.56699 - 39 + NaN NaN 187666.3 NaN 12829 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16348 70.312 NaN 148140 35 0 18018 0.263 + 10199 IGAESGVELL 10 47 494.2715628094498 986.5285726856996 2 494.2709045410156 MULTI HCD FTMS 0 0 0 16339 46799.48828125 0.6656026323058588 4 -0.12091827392578125 9 Unmodified _IGAESGVELL_ REV__ENST00000477801.1_1_1:153363297-153363519:-|nuORF 17.11289562659939 0.35104376501799556 2 VE{I|L}{I|L} 4 -1 46.186 0 0 4.6816 0 0 514.2390585757908 0 514.2390585757908 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 VE{I|L}{I|L} 4.6816 + + 27 NaN NaN 130859.7 NaN 12830 3516 16339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16350 70.317 NaN 2853200 35 0 317910 0.327 + 29428 TYTDRVFFL 9 108 581.3005218108478 1160.5864906884956 2 581.30078125 MULTI HCD FTMS 0 0 0 16349 2104137 0.4839491265505517 8 -0.20912933349609375 1 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 110.5527297667825 0.0028521687250969148 2 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 103.66 0 0 8.9313 8.9313 94.839 0 0 0 16.381580146315784 81.01728122573242 16.381580146315784 12.403626894942448 0 2.8494850021680094 1.6989700043360187 1.610924374808178 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT][RD]TV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]TV[RD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}V;[YT][RD]TV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8.9313;7.8626;7.7613;6.8401;6.6926;6.3695;6.3256;6.3254;5.8906;5.3007 +;-;-;-;-;-;-;-;-;- + 4418 NaN NaN 541459.7 NaN 12831 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16351 70.321 NaN 1018500 35 0 91633 0.261 + 13093 KYLELCVDL 9 97 548.2915374141361 1094.568521895072 2 548.291748046875 MULTI HCD FTMS 0 0 0 16349 1221231.75 0.862995820370168 -3 0.0880889892578125 2 Unmodified _KYLELCVDL_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 80.6760300276096 0.005633624786464751 2 [YK]{I|L}E{I|L}CVD{I|L} 9 0 + 74.09 0 0 6.7689 6.7689 92.115 0 0 0 3.65279269351241 44.185756335471424 3.65279269351241 15.656753288559813 0 2.6989700043360187 0 0.4247425010840047 0 + + [YK]{I|L}E{I|L}CVD{I|L};{[TV]|[{I|L}S]}Y{[VA]|[{I|L}G]}{I|L}CVD{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[VA]|[{I|L}G]}{I|L}CVD{I|L};{[TV]|[{I|L}S]}{[DS]|[MA]|[CV]|TT}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VD{I|L};{NN|[MP]|[D{I|L}]|[EV]}VCE{I|L}[YK]{I|L};{NN|[MP]|[D{I|L}]|[EV]}VCE{I|L}[Y{I|L}]K;[VS]{[ES]|[DT]|[{I|L}C]}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VD{I|L};[DV]C{I|L}E{I|L}[YK]{I|L};{NN|[MP]|[D{I|L}]|[EV]}VP[{M(Oxidation (M))|F}T][YK]{I|L};[VS]{M(Oxidation (M))|F}EP{I|L}[YK]{I|L} 6.7689;5.3385;4.6235;2.4847;2.0381;1.6022;1.5414;1.2597;1.2031;1.1048 +;-;-;-;-;-;-;-;-;- + 3101 NaN NaN 267663.2 NaN 12832 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16352 70.325 NaN 546650 35 0 36251 0.261 + 2851 DYLSYHELQ 9 86 584.2688713795056 NaN 0 584.2890625 PEAK HCD FTMS 0 0 0 16349 39245.7890625 1 0 0 3 Unmodified _DYLSYHELQ_ ENSG00000142623|ENST00000375471|PADI1 15.847184025352803 0.21527282152051216 2 QEC{[WT]|[RM]}Q 6 8 30.085 0 0 2.579 0 0 132.06949103464132 256.12973962955317 388.1992306641945 0 0 0 0 0 0 0 0.6382104921644451 1.1307196863200843 QEC{[WT]|[RM]}Q 2.579 - 1346 + NaN NaN 168771.3 NaN 12833 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16353 70.328 NaN 242890 35 0 24590 0.261 + 10184 IFTDVALKF 9 63 527.3024262867368 1052.5902996402735 2 527.3021850585938 MULTI HCD FTMS 0 0 0 16349 91164.265625 0.25860311635008965 -3 0.0880889892578125 4 Unmodified _IFTDVALKF_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 92.65332237495696 0.004456439685314431 2 {I|L}{M(Oxidation (M))|F}T[DV]A{I|L}K{M(Oxidation (M))|F} 9 0 + 64.624 0 0 6.1396 6.1396 91.746 0 0 0 45.16048140234034 16.478174818886373 16.478174818886373 21.281446971601312 0 2.1549471895720984 0 0.6989700043360187 0.3054621874040891 + + {I|L}{M(Oxidation (M))|F}T[DV]A{I|L}K{M(Oxidation (M))|F};{I|L}[TP][YT]A{I|L}K{M(Oxidation (M))|F} 6.1396;4.1177 +;- + 162 + NaN NaN 129499.6 NaN 12834 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16354 70.331 NaN 128700 35 0 8232.9 0.261 + 21453 PWQQTPWFY 9 50 626.7933465887454 NaN 0 626.8059692382812 PEAK HCD FTMS 0 0 0 16349 29463.189453125 0.7457662068159522 -5 0.13339996337890625 5 Unmodified _PWQQTPWFY_ REV__ENSG00000108370|ENST00000262406|RGS9;REV__ENST00000581175.5_1_17:63133658-63206777:+|nuORF;REV__nc|ENSG00000108370|O75916-2|RGS9;REV__nc|ENSG00000108370|O75916-3|RGS9;REV__nc|ENSG00000108370|O75916-5|RGS9 10.073929032068715 0.24642998803896465 2 W 1 -1 12.857 0 0 1.0272 0 0 328.1364235468282 734.3321016900999 1062.4685252369281 0 0 0 0 0 0.8252574989159953 0 0 0 W 1.0272 + + 7 + NaN NaN 124911.8 NaN 12835 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16355 70.335 NaN 107830 35 0 10087 0.263 + 14296 LDERAESF 8 41 483.72862843351896 NaN 0 483.7160339355469 PEAK HCD FTMS 0 0 0 16349 33388.71484375 1 0 0 6 Unmodified _LDERAESF_ REV__ENSG00000075886|ENST00000321253|TUBA3D;REV__ENSG00000152086|ENST00000312988|TUBA3E;REV__ENSG00000183785|ENST00000330423|TUBA8;REV__ENSG00000198033|ENST00000400113|TUBA3C;REV__nc|ENSG00000183785|Q9NY65-2|TUBA8;REV__TUBA3C|p.G416W|1|0.21|ENSG00000198033|chr13:19173970-19173970|C/A|missense_variant 5.230669730166228 0.38822285293237185 2 N{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.82437 0 0 131.12777659828595 570.1885555931051 701.316332191391 0 0 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 0.82437 - 11 + NaN NaN 107246 NaN 12836 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16356 70.338 NaN 263050 35 0 12681 0.261 + 296 AFMKGVFTF 9 73 524.2704981567848 1046.5264433803695 2 524.2700805664062 MULTI HCD FTMS 0 0 0 16349 93035.6953125 0.7888007436681694 8 -0.20912933349609375 7 Unmodified _AFMKGVFTF_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 43.85829265575387 0.04763305254408404 2 PVH{[CP]|[EA]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8 6 46.336 0 0 4.4276 0 0 100.06759810092088 0 100.06759810092088 0 39.882287586051106 0 0 0 1.3494850021680094 0 0.4247425010840047 0 PVH{[CP]|[EA]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.4276 - 157 + NaN NaN 131382.9 NaN 12837 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16357 70.345 NaN 254110 35 0 45980 0.261 + -1 AFTEGCNPCR 10 70 598.7454350825693 1195.4763172319385 2 598.7463989257812 MULTI HCD FTMS 0 0 0 16349 165745.0625 1 0 0 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))AFTEGCNPC(Carbamidomethyl (C))R_ REV__ENST00000396004.2_1_12:25120063-25120186:-|nuORF 5.731851221503515 0.44496410492002586 2 Q[Q{I|L}] 3 -1 14.582 0 0 1.2198 0 0 808.2633788547886 0 808.2633788547886 0 7.134679910804405 0 0 0 0 0 0 0.7134679910804405 Q[Q{I|L}] 1.2198 - 55 + NaN NaN 140951.4 NaN 12838 3517 16349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16359 70.35 NaN 423200 35 0 28190 0.327 + 5847 FPDEFHLQTL 10 78 623.8085109557719 1245.6024689783437 2 623.8084716796875 MULTI HCD FTMS 0 0 0 16358 195747.890625 0.5080730052971886 1 -0.032806396484375 1 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 81.9152076656658 0.003466872489127602 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L} 10 0 + 62.867 0 0 5.0471 5.0471 84.397 0 0 0 5.764837301042718 27.645228064085998 5.764837301042718 4.771212547196626 0 2 0 0.5 0.3252574989159953 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]{M(Oxidation (M))|F}QT{I|L};[DP]{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[AG]T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]Q{M(Oxidation (M))|F}T{I|L};[DP]{M(Oxidation (M))|F}E[H{I|L}]{M(Oxidation (M))|F}QT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}]{M(Oxidation (M))|F}[AG]T{I|L};[DP]{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}[AG]T{I|L};[DP]{M(Oxidation (M))|F}E[H{I|L}]Q{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DE[H{I|L}][AG]{M(Oxidation (M))|F}T{I|L} 5.0471;4.6641;4.3866;4.3114;4.1613;4.0036;3.6672;3.6509;3.5008;3.1644 +;-;-;-;-;-;-;-;-;- + 848 NaN NaN 165877.9 NaN 12839 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16360 70.354 NaN 755810 35 0 111560 0.261 + 6631 FPLSFGTDIF 10 99 572.2897229524438 1142.5648929716874 2 574.8177490234375 MULTI HCD FTMS 0 0 0 16358 6047.28173828125 0.15539712990366428 -1 0.03282928466796875 2 Unmodified _FPLSFGTDIF_ REV__ENSG00000078747|ENST00000374864|ITCH;REV__ENSG00000123124|ENST00000517970|WWP1;REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF;REV__nc|ENSG00000123124|Q9H0M0-3|WWP1;REV__nc|ENSG00000123124|Q9H0M0-6|WWP1;REV__nc|ENSG00000289720|Q96J02-3|ITCH;REV__nc|ENSG00000289720|Q96J02|ITCH;REV__WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 12.531546534597751 0.39389615866941496 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]E{I|L}N{I|L} 8 -1 26.71 0 0 2.3377 0 0 0 123.01379823474272 123.01379823474272 8.750904927978791 0 0 0 0 0 1.5228787452803376 0.28872548999643577 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]E{I|L}N{I|L} 2.3377 - 592 NaN NaN 209688.4 NaN 12840 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16361 70.357 NaN 634070 35 0 36542 0.261 -1 FVYCNERSL 9 94 594.2806410734136 1186.546729213627 2 594.2692260742188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FVYC(Carbamidomethyl (C))NERSL_ ENSG00000185070|ENST00000330753|FLRT2 12.531546534597751 0.2520865569484384 2 VWT{M(Oxidation (M))|F} 4 -1 31.938 0 0 2.6917 0 0 635.2504139630875 0 635.2504139630875 0 7.336199910112455 0 0 0 0 0 0 0 VWT{M(Oxidation (M))|F} 2.6917 - 1261 NaN NaN 197780.9 NaN 12841 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16362 70.361 NaN 653360 35 0 46366 0.261 + 6053 FPDWREDVL 9 105 588.7880405952984 1175.5615282573967 2 588.7877807617188 MULTI HCD FTMS 0 0 0 16358 162690.953125 0.5203130667066971 -2 0.06531524658203125 4 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 49.52724829834842 0.03223213920720493 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L} 9 0 + 57.335 0 0 4.8772 4.8772 87.879 0 0 0 5.839220584157658 30.644490976677044 5.839220584157658 10.98181473782688 0 1.4731975075880328 2 0 0.2302046884880938 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L};{I|L}M[WH]Q{M(Oxidation (M))|F}CV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREVVE;{I|L}M[WH][AG]{M(Oxidation (M))|F}CV{I|L};[DP]{M(Oxidation (M))|F}WREDV{I|L};{M(Oxidation (M))|F}[YN]D[{I|L}T]RT{M(Oxidation (M))|F};{M(Oxidation (M))|F}[YG]GD[{I|L}T]RT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[C(Carbamidomethyl (C))K]K[HN]V{I|L};[DP][{I|L}P]WSHVPE;[DP]{M(Oxidation (M))|F}WREVVE 4.8772;3.943;3.5611;3.1597;2.6648;2.1206;2.0143;1.9949;1.4997;1.3486 +;-;-;-;-;-;-;-;-;- + 1608 NaN NaN 201845.8 NaN 12842 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16363 70.364 NaN 882350 35 0 49585 0.261 + 2812 DYISFAFRL 9 100 566.2955546601535 1130.5765563871068 2 567.279541015625 MULTI HCD FTMS 0 0 0 16358 6598.9462890625 0.0598617393278242 9 -0.2253875732421875 5 Unmodified _DYISFAFRL_ REV__ENSG00000188386|ENST00000374806|PPP3R2 13.90604991867851 0.24021115267848145 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 -1 29.494 0 0 2.6087 0 0 0 762.4319093843361 762.4319093843361 8.066884185923655 0 0 0 0 0 2 0.3807196863200844 0 {[YD]|[{M(Oxidation (M))|F}M]}S 2.6087 - 676 NaN NaN 235075.2 NaN 12843 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16364 70.367 NaN 342870 35 0 18668 0.261 + 16703 LYAADSFSCLL 11 80 630.3021038455732 1258.5896547579464 2 630.7880859375 MULTI HCD FTMS 0 0 0 16358 37262.734375 0.3726226277448676 2 -0.05560302734375 6 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 47.748688679222035 0.09066307675719942 2 {I|L}YCW{[HG]|PP}T{I|L} 8 -1 57.044 0 0 4.5324 0 0 0 282.1085604303344 282.1085604303344 5.199630678816618 0 0 0 0 0.3054621874040891 1 1.6989700043360187 0 {I|L}YCW{[HG]|PP}T{I|L} 4.5324 - 1157 + NaN NaN 145026 NaN 12844 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16365 70.371 NaN 267100 35 0 30065 0.262 + 2779 DYDPLVVKL 9 58 531.2975842572934 1060.5806155813866 2 531.2978515625 MULTI HCD FTMS 0 0 0 16358 37359.97265625 0.2659074561215232 6 -0.16014862060546875 7 Unmodified _DYDPLVVKL_ ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF 39.94969957227396 0.06557568441294001 2 {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VV[K{I|L}] 9 0 + 49.516 0 0 4.6687 4.6687 89.754 0 0 0 33.06188793467889 12.147642715192504 12.147642715192504 25.23866405091114 0 1.7614393726401687 1.6989700043360187 0 0.5 + + {[YD]|[{M(Oxidation (M))|F}M]}D[{I|L}P]VV[K{I|L}];{[YD]|[{M(Oxidation (M))|F}M]}[VP]EVV[K{I|L}] 4.6687;2.289 +;- + 57 + NaN NaN 132854.8 NaN 12845 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16366 70.374 NaN 125950 35 0 12691 0.261 + 16250 LPYVCRKP 8 42 488.2781790060836 NaN 0 488.2781982421875 PEAK HCD FTMS 0 0 0 16358 34748.08203125 0.3167207072718189 1 -0.032806396484375 8 Unmodified _LPYVCRKP_ ENSG00000054219|ENST00000263636|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;LY75|p.Y933Ifs*2|1|0.33|ENSG00000054219|chr2:159852287-159852288|-/T|frameshift_variant;nc|ENSG00000054219|O60449-2|LY75;nc|ENSG00000054219|O60449-3|LY75 13.50788311687929 0.38822285293237185 2 PQ 2 7 15.217 0 0 1.5614 0 0 113.08473732876264 633.3218727120557 746.4066100408184 0 0 0 0 0 0.4247425010840047 0 0 0 PQ 1.5614 - 6 + NaN NaN 114838.9 NaN 12846 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16367 70.377 NaN 274400 35 0 97836 0.261 + 16456 LSRFLHFYF 9 49 410.55363153528367 1228.639065206051 3 410.5539245605469 MULTI HCD FTMS 0 0 0 16358 77237.3046875 0.14875551755808256 22 -0.546051025390625 9 Unmodified _LSRFLHFYF_ REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|30|3|anti-sense 7.101721422024254 0.29718071671418667 2 Y{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.5206 0 0 900.4974241469059 0 900.4974241469059 0 26.365006360318688 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F} 2.5206 + + 10 + NaN NaN 143929.9 NaN 12847 3518 16358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16369 70.382 NaN 839820 35 0 116380 0.327 + 21091 PNELVDLTL 9 61 507.2791513137693 1012.5437496943387 2 507.2795104980469 MULTI HCD FTMS 0 0 0 16368 276188.125 0.45297325167737595 2 -0.0489654541015625 1 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 38.175570920033316 0.07371992880350783 2 D{I|L}T{I|L} 4 -1 49.993 0 0 4.9373 0 0 552.2904380307931 0 552.2904380307931 0 25.658846708273018 0 0 0 1.4247425010840047 0 0.3807196863200844 0 D{I|L}T{I|L} 4.9373 + + 109 NaN NaN 228649.3 NaN 12848 3519 16368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16370 70.387 NaN 426500 35 0 96746 0.261 -1 FPANVMDVI 9 58 511.25485591142274 1020.4951588896455 2 511.25531005859375 MULTI HCD FTMS 0 0 0 16368 193373.984375 0.3902469718807543 10 -0.23496246337890625 2 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}DV{I|L} 4 -1 29.641 0 0 2.9046 0 0 528.2690907209 0 528.2690907209 0 4.636605671143741 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}DV{I|L} 2.9046 + + 334 NaN NaN 156898.3 NaN 12849 3519 16368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16371 70.39 NaN 271660 35 0 8087.6 0.262 + 30203 VIDCSSSQPQF 11 82 605.7724577287065 NaN 0 605.7926025390625 PEAK HCD FTMS 0 0 0 16368 18849.6875 0.7662745325335825 -3 0.09812164306640625 3 Unmodified _VIDCSSSQPQF_ ENSG00000108666|ENST00000577809|C17orf75 8.155526934196011 0.3189852622248163 2 YW{I|L}V 4 11 8.1361 0 0 0.67267 0 0 327.0725052066204 318.1239107721313 645.1964159787517 0 0 0 0 0 0 0 0 0 YW{I|L}V 0.67267 - 385 + NaN NaN 118952.8 NaN 12850 3519 16368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16372 70.394 NaN 161150 35 0 36410 0.261 -1 LFMMHCVEVL 10 49 639.8051605804899 1277.5957682277797 2 639.8057861328125 MULTI HCD FTMS 0 0 0 16368 36479.00390625 0.2840238603005135 7 -0.16637420654296875 4 Carbamidomethyl (C) _LFMMHC(Carbamidomethyl (C))VEVL_ ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP 3.5964929083625545 0.45626689593999237 2 V{I|L} 2 -1 25.969 0 0 2.0327 0 0 1047.4325122503205 0 1047.4325122503205 0 23.979400086720375 0 0 0 0.5 0 0 0 V{I|L} 2.0327 + + 3 NaN NaN 120337.4 NaN 12851 3519 16368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16373 70.397 NaN 324040 35 0 51841 0.261 + 4999 FCEWMIQQI 9 78 599.2747962672737 1196.5350396013473 2 599.2750244140625 MULTI HCD FTMS 0 0 0 16368 109672.4140625 1 0 0 5 Unmodified _FCEWMIQQI_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000475627.1_1_6:32918275-32920806:-|nuORF;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 37.97399986684836 0.07464525285885698 2 TCQQ{I|L} 5 5 49.527 0 0 4.1392 0 0 605.2797108380875 0 605.2797108380875 0 39.024947271955455 0 0 0 1.5 0 0.8252574989159953 0.2742275032520141 TCQQ{I|L} 4.1392 - 167 NaN NaN 145227 NaN 12852 3519 16368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16374 70.4 NaN 260290 35 0 18663 0.261 -1 FPEEGDIMVTV 11 65 626.7933465887454 NaN 0 626.7937622070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _FPEEGDIM(Oxidation (M))VTV_ ENSG00000038219|ENST00000040738|BOD1L1 11.494710602746466 0.3095129597915146 2 YW 2 -1 15.261 0 0 1.2193 0 0 165.08042218553015 734.3310640924436 899.4114862779738 0 0 0 0 0 0.7302046884880937 0 0 0 YW 1.2193 - 51 + NaN NaN 121969 NaN 12853 3519 16368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16376 70.405 NaN 706310 35 0 211280 0.327 + 15988 LPQPSSIVL 9 55 477.28691321697625 952.5592735007525 2 477.2869873046875 MULTI HCD FTMS 0 0 0 16375 513457.40625 0.8884486471176609 3 -0.0850677490234375 1 Unmodified _LPQPSSIVL_ ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF 38.175570920033316 0.07371992880350783 2 S{I|L}V{I|L} 4 5 43.162 0 0 4.5311 0 0 522.2803822248062 0 522.2803822248062 0 26.172137691284405 0 0 0 1.25 0 0.3494850021680094 0 + S{I|L}V{I|L} 4.5311 + + 154 NaN NaN 195771.5 NaN 12854 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16377 70.41 NaN 155300 35 0 23992 0.261 -1 DDLMPINL 8 37 473.7311445069164 945.4477360806328 2 473.7308044433594 MULTI HCD FTMS 0 0 0 16375 127525.359375 0.4086308811243766 11 -0.2545166015625 2 Oxidation (M) _DDLM(Oxidation (M))PINL_ ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B 28.486842064014134 0.3788298654084067 2 {I|L}N{I|L} 3 -1 34.693 0 0 3.6695 0 0 587.225832370261 0 587.225832370261 0 24.235162698957282 0 0 0 0.5 0 0 0.3494850021680094 {I|L}N{I|L} 3.6695 + + 27 NaN NaN 120852.6 NaN 12855 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16378 70.413 NaN 215500 35 0 18404 0.261 + 31822 VYMDWYEKF 9 56 640.7863644925661 1279.5581760519322 2 640.7855834960938 MULTI HCD FTMS 0 0 0 16375 89717.015625 0.09051666245025113 31 -0.7884292602539062 3 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 42.312485326615175 0.05472917415473307 2 [YV]MDWYEK{M(Oxidation (M))|F} 9 0 + 68.394 0 0 5.3452 5.3452 92.48 0 0 0 1.0906717222802342 1.0906717222802342 1.0906717222802342 68.39448436569874 0 2.4291746928241125 1.6989700043360187 0 0 + + [YV]MDWYEK{M(Oxidation (M))|F} 5.3452 + + 132 + NaN NaN 128561 NaN 12856 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16379 70.416 NaN 232160 35 0 9859.8 0.261 + 12767 KYDEIFYNL 9 71 602.7989607478718 NaN 0 602.787353515625 PEAK HCD FTMS 0 0 0 16375 23929.697265625 0.4319682690313641 2 -0.058990478515625 4 Unmodified _KYDEIFYNL_ ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2 11.494710602746466 0.23954507882326587 2 QD{I|L}{M(Oxidation (M))|F}R 5 6 23.734 0 0 1.9719 0 0 264.13548759067663 277.0825594537719 541.2180470444486 0 0 0 0 0 0 0 0.3054621874040891 0.28872548999643577 QD{I|L}{M(Oxidation (M))|F}R 1.9719 - 165 + NaN NaN 122813.8 NaN 12857 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16380 70.42 NaN 126380 35 0 9125.2 0.263 -1 MLDAVLGVM 9 58 482.74516033520706 963.4757677372141 2 482.7450866699219 MULTI HCD FTMS 0 0 0 16375 51957.85546875 0.40164837792915425 16 -0.38544464111328125 5 Oxidation (M) _MLDAVLGVM(Oxidation (M))_ ENSG00000167617|ENST00000301200|CDC42EP5 30.224811164608877 0.11021837014094292 2 [DV]C{I|L}{[VA]|[{I|L}G]}VV{M(Oxidation (M))|F} 9 -1 + 40.869 0 0 4.2418 4.2418 81.521 0 0 0 16.56173420760374 2.900217704352457 2.900217704352457 0.5507626957901124 0 1.8807196863200843 0 0 0 [DV]C{I|L}{[VA]|[{I|L}G]}VV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AD{[VA]|[{I|L}G]}VV{M(Oxidation (M))|F} 4.2418;4.1846 -;- 179 + NaN NaN 101531.3 NaN 12858 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16381 70.423 NaN 129850 35 0 8683.5 0.261 -1 MCFPPGVCR 9 43 533.7349746828697 1065.4553964325394 2 533.7352294921875 MULTI HCD FTMS 0 0 0 16375 83563.828125 0.7707988061167707 3 -0.0850677490234375 6 Carbamidomethyl (C) _MCFPPGVC(Carbamidomethyl (C))R_ ENST00000449997.1_1_7:44098463-44099151:+|nuORF 4.75600775471527 0.31496297302216103 2 YC(Carbamidomethyl (C))R 3 -1 23.188 0 0 2.1763 0 0 568.2511463849625 0 568.2511463849625 0 10.880456295278407 0 0 0 0 0 0 0 YC(Carbamidomethyl (C))R 2.1763 - 13 NaN NaN 110016 NaN 12859 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16382 70.426 NaN 104660 35 0 9361.2 0.261 + -1 MGGMCSSNCMC 11 44 643.1758548576421 NaN 0 643.4483032226562 PEAK HCD FTMS 0 0 0 16375 11339.923828125 1 0 0 7 2 Carbamidomethyl (C),3 Oxidation (M) _M(Oxidation (M))GGM(Oxidation (M))C(Carbamidomethyl (C))SSNC(Carbamidomethyl (C))M(Oxidation (M))C_ REV__TP53|p.Y236C|4|0.4|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant 0 0.34212014346876374 2 VY 2 -1 9.464 0 0 0.73687 0 0 180.88996547524658 838.2939547174436 1019.1839201926903 0 0 0 0 0 0 0 0 0 VY 0.73687 - 5 + NaN NaN 121100.3 NaN 12860 3520 16375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16384 70.431 NaN 8044700 35 0 2207400 0.327 + 12809 KYEELFPAF 9 87 572.2897229524438 1142.5648929716874 2 572.2902221679688 MULTI HCD FTMS 0 0 0 16383 3584326.25 0.5877092632110026 1 -0.0328216552734375 1 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 118.0683919894846 0.0016252157255221692 2 [VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 10 4 + 111.29 0 0 9.7405 9.7405 92.563 0 0 0 7.7815125038364386 13.010299956639813 7.7815125038364386 7.7815125038364386 0 2.3494850021680094 0 2.841129063296272 0 [VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YK]EE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[YE]KE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};KYEE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F}{I|L}ES{M(Oxidation (M))|F}[PA];[VS]{M(Oxidation (M))|F}SNK{[DS]|[MA]|[CV]|TT}{I|L}{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SE[PA]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9.7405;9.0595;8.7096;8.5047;8.475;8.187;7.4739;6.3027;6.2183;5.8689 -;+;-;-;-;+;-;-;-;- + 2614 NaN NaN 810109.8 NaN 12861 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16385 70.436 NaN 1696900 35 0 525930 0.261 + 24588 RYLPDTLLL 9 66 552.3264929919228 1102.6384330506455 2 552.3268432617188 MULTI HCD FTMS 0 0 0 16383 858753.875 0.13356033303225692 9 -0.2154693603515625 2 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 38.175570920033316 0.07371992880350783 2 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L} 9 2 + 68.139 0 0 6.1796 6.1796 93.849 0 0 0 17.772336398234003 53.53462798369996 17.772336398234003 68.13872175346184 0 1.7302046884880937 1.3010299956639813 0.8494850021680094 0 [Y{I|L}]R[DP]T{I|L}{I|L}{I|L} 6.1796 - 241 NaN NaN 361335.1 NaN 12862 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16386 70.439 NaN 835540 35 0 68987 0.261 + 22940 QYVAKREFNN 10 87 634.8248311089933 NaN 0 634.810546875 PEAK HCD FTMS 0 0 0 16383 10833.6005859375 0.31946079304876607 1 -0.0328216552734375 3 Unmodified _QYVAKREFNN_ REV__ENSG00000173253|ENST00000358146|DMRT2;REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2 18.1463463914782 0.29565035219289926 2 C(Carbamidomethyl (C))VYW{I|L}H 6 -1 32.568 0 0 2.5692 0 0 131.1219962154492 275.1068514459594 406.2288476614086 0 0 0 0 0 0.3807196863200844 0 0 0 C(Carbamidomethyl (C))VYW{I|L}H 2.5692 - 1109 + NaN NaN 212957.1 NaN 12863 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16387 70.443 NaN 529040 35 0 65684 0.263 + 26214 SPSYPEISF 9 62 513.7419931321637 1025.4694333311272 2 513.7428588867188 MULTI HCD FTMS 0 0 0 16383 252235.890625 0.6417065403746386 1 -0.0328216552734375 4 Unmodified _SPSYPEISF_ ENSG00000148444|ENST00000376836|COMMD3;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF 61.357469665136826 0.01568246967499496 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PE{I|L}S{M(Oxidation (M))|F} 9 3 + 71.628 0 0 6.9849 6.9849 93.062 0 0 0 12.432562101416167 53.6696871556164 12.432562101416167 19.542425094393252 0 2.3182503180159344 1.3010299956639813 1.2302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}PE{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[PS]PE{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YR][YG]S{M(Oxidation (M))|F} 6.9849;5.0792;3.8294 -;-;- 201 NaN NaN 174266.4 NaN 12864 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16388 70.446 NaN 800380 35 0 86371 0.261 + 6461 FPIIRDQIF 9 104 574.826831289186 1147.6391096451719 2 574.8269653320312 MULTI HCD FTMS 0 0 0 16383 159197.0625 0.8270357225827095 -1 0.0261688232421875 5 Unmodified _FPIIRDQIF_ ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3 76.82478488871298 0.006879825292024087 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RDQ{I|L}{M(Oxidation (M))|F} 9 0 + 70.737 0 0 6.1637 6.1637 85.299 0 0 0 9.652478964635506 2.530834337684311 2.530834337684311 2.530834337684311 0 2.41944517631652 1.6989700043360187 0 0.3054621874040891 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RDQ{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RDQ{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RD[AG]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{I|L}{I|L}RDQ{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}RD[AG]{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}P{I|L}{I|L}RD[AG]{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}R{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QG]|[NA]}[KA]Q{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]E{I|L}N{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QG]|[NA]}[KA]Q{M(Oxidation (M))|F}{I|L} 6.1637;5.9432;5.3614;5.3226;5.1408;4.5203;4.1037;3.8854;3.7345;3.6649 +;-;-;+;-;-;-;-;-;- + 1550 NaN NaN 206416.3 NaN 12865 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16389 70.449 NaN 153690 35 0 58195 0.262 + 1054 AYGLVSATF 9 43 464.742605199373 NaN 0 464.7424011230469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _AYGLVSATF_ ENSG00000156875|ENST00000370152|MFSD14A 11.640296217721598 0.23883959125015683 2 VS 2 7 9.068 0 0 0.97772 0 0 404.2077312954272 334.1435640924438 738.351295387871 0 0 0 0 0 0.5 0 0 0 + VS 0.97772 + + 4 + NaN NaN 111065.2 NaN 12866 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16390 70.453 NaN 99356 35 0 8573.3 0.261 -1 LACALEVVM 9 43 482.74516033520706 963.4757677372141 2 482.7450256347656 MULTI HCD FTMS 0 0 0 16383 33290.375 0.2573436682244373 17 -0.418121337890625 7 Oxidation (M) _LACALEVVM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 16.942295170755138 0.21397866736869717 2 [YT]VE[QP]N 7 -1 34.442 0 0 3.5747 0 0 0 129.07754931363914 129.07754931363914 18.95705707750807 0 0 0 0 0.9247425010840047 1.3979400086720375 0 0 [YT]VE[QP]N 3.5747 - 211 NaN NaN 108826.9 NaN 12867 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16391 70.456 NaN 154600 35 0 16635 0.261 + 25826 SLSAAKRF 8 52 440.2554664946695 NaN 0 440.2553405761719 PEAK HCD FTMS 0 0 0 16383 24305.8125 0.8376872904069657 -1 0.0261688232421875 8 Unmodified _SLSAAKRF_ REV__ENST00000521104.1_1_6:56504020-56557947:-|nuORF;REV__nc|ENSG00000151914|Q03001-13|DST 2.577480529830294 0.38822285293237185 2 {I|L} 1 -1 5.4846 0 0 0.62431 0 0 525.2658635539891 237.12355981998283 762.3894233739719 0 0 0 0 0 0 0 0 0 {I|L} 0.62431 + + 9 + NaN NaN 128571.6 NaN 12868 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16392 70.459 NaN 242520 35 0 14491 0.261 + -1 DEMPDMLV 8 60 491.1988177835511 NaN 0 491.19818115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Oxidation (M) _DEM(Oxidation (M))PDM(Oxidation (M))LV_ REV__ENSG00000196169|ENST00000389916|KIF19;REV__ENST00000359939.10_1_17:72322488-72347101:+|nuORF;REV__ENST00000547389.1_1_17:72322488-72347101:+|nuORF;REV__nc|ENSG00000196169|Q2TAC6-2|KIF19;REV__nc|ENSG00000196169|Q2TAC6-3|KIF19 2.577480529830294 0.38822285293237185 2 V 1 -1 5.4846 0 0 0.55943 0 0 621.1632778016741 257.12897669010005 878.2922544917742 0 0 0 0 0 0 0 0 0 V 0.55943 + + 9 + NaN NaN 146844 NaN 12869 3521 16383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16394 70.464 NaN 2770100 35 0 219780 0.327 + 19823 NYAWVYYHL 9 92 614.7931119449629 1227.5716709567257 2 614.79296875 MULTI HCD FTMS 0 0 0 16393 986403.8125 0.015527802064799295 52 -1.3616409301757812 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 172.90653553480564 2.2447970467336844E-09 2 [YN]AWVYYH{I|L} 9 0 + 112.46 0 0 9.1614 9.1614 94.806 0 0 0 33.46787486224656 84.01654413832347 33.46787486224656 11.505149978319906 0 2.5 1.6989700043360187 0 2.5400990676322905 + + [YN]AWVYYH{I|L};[YN]AVWYYH{I|L};[YN]AWVW[YN]{I|L};NYAWVYYH{I|L};NYA{[DA]|[EG]}V{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]AVWW[YN]{I|L};[YN]AV{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}[DC]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};NYA[{M(Oxidation (M))|F}V]{[DA]|[EG]}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}AANV{M(Oxidation (M))|F}VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.1614;8.2242;6.4733;6.4138;6.0054;5.5361;4.9086;4.7922;4.7382;4.0628 +;-;-;+;-;-;-;-;-;- + 2334 NaN NaN 522367.2 NaN 12870 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16395 70.468 NaN 1242200 35 0 143710 0.261 + 29429 TYTDRVFFL 9 88 581.3005218108478 1160.5864906884956 2 581.3006591796875 MULTI HCD FTMS 0 0 0 16393 794121.3125 0.18264700233851347 13 -0.29364013671875 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 90.13494162714682 0.004522430935000059 2 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 98.4 0 0 8.4784 8.4784 93.91 0 0 0 13.05770808032122 66.08735303473303 13.05770808032122 11.020599913279625 0 2.8494850021680094 1.6989700043360187 1.2614393726401687 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDRV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TV[RD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};[YT]TDRV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]TV[RD]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]TDR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}V;[YT]TV[RD]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.4784;7.5289;7.3085;6.3695;6.3589;6.1385;6.0418;5.4199;5.3648;3.9329 +;-;-;-;-;-;-;-;-;- + 1827 NaN NaN 285604.1 NaN 12871 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16396 70.472 NaN 1638700 35 0 144680 0.261 + 13094 KYLELCVDL 9 105 548.2915374141361 1094.568521895072 2 548.2916870117188 MULTI HCD FTMS 0 0 0 16393 514923.78125 0.3638761201778063 2 -0.04555511474609375 3 Unmodified _KYLELCVDL_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 90.13494162714682 0.004522430935000059 2 [Y{I|L}]KE{I|L}CVD{I|L} 9 2 + 77.984 0 0 7.1246 7.1246 87.308 0 0 0 3.3514911028066194 8.651823829086382 3.3514911028066194 3.3514911028066194 0 2.4247425010840047 0.7695510786217261 0.6989700043360187 0 [Y{I|L}]KE{I|L}CVD{I|L};[YK]{I|L}E{I|L}CVD{I|L};[Y{I|L}]KE{I|L}CVEV;[YK]{I|L}E{I|L}CVEV;[Y{I|L}]S{[VA]|[{I|L}G]}{I|L}CVD{I|L};{[TV]|[{I|L}S]}Y{[VA]|[{I|L}G]}{I|L}CVD{I|L};[Y{I|L}]S{[VA]|[{I|L}G]}{I|L}CVEV;{[TV]|[{I|L}S]}Y{[VA]|[{I|L}G]}{I|L}CVEV;{[TV]|[{I|L}S]}{M(Oxidation (M))|F}T{I|L}E{I|L}ACV;{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}V]{I|L}E{I|L}ACV 7.1246;6.8184;6.2996;5.9934;5.3453;5.126;4.5202;4.3009;3.7089;3.1906 -;+;-;-;-;-;-;-;-;- + 4481 NaN NaN 355842.1 NaN 12872 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16397 70.475 NaN 333250 35 0 21297 0.261 + 7852 FYSNIQTVI 9 61 542.7879212042014 1083.5612894752028 2 542.7875366210938 MULTI HCD FTMS 0 0 0 16393 162592.765625 0.6832651552359466 5 -0.1107940673828125 4 Unmodified _FYSNIQTVI_ ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A 31.26834338654808 0.10542797264966089 2 QC(Carbamidomethyl (C)){I|L}GY{I|L} 6 7 45.61 0 0 4.2093 0 0 331.21052748847814 0 331.21052748847814 0 15.255762612236907 0 0 0 1 0 0 0.3494850021680094 QC(Carbamidomethyl (C)){I|L}GY{I|L} 4.2093 - 354 NaN NaN 146038.6 NaN 12873 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16398 70.479 NaN 315810 35 0 50984 0.261 + 27457 SYVRSLPFF 9 69 558.2989435185425 1114.583334103885 2 558.2981567382812 MULTI HCD FTMS 0 0 0 16393 118990.078125 0.06961216174681423 18 -0.43145751953125 5 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 38.175570920033316 0.07371992880350783 2 M{I|L}{M(Oxidation (M))|F} 3 7 33.188 0 0 2.9776 0 0 705.3837279279454 0 705.3837279279454 0 23.750612633917 0 0 0 1 0 0 0 M{I|L}{M(Oxidation (M))|F} 2.9776 - 161 + NaN NaN 136561.2 NaN 12874 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16399 70.482 NaN 264240 35 0 32949 0.261 + -1 AYVASGGQHCM 11 74 598.7454350825693 1195.4763172319385 2 599.2459716796875 MULTI HCD FTMS 0 0 0 16393 10971.5703125 0.08344213474246953 5 -0.1107940673828125 6 Carbamidomethyl (C),Oxidation (M) _AYVASGGQHC(Carbamidomethyl (C))M(Oxidation (M))_ REV__ENSG00000162073|ENST00000318782|PAQR4;REV__nc|ENSG00000162073|Q8N4S7-2|PAQR4 5.296884461304476 0.39569033063702824 2 QQ[Q{I|L}] 4 -1 16.22 0 0 1.3568 0 0 680.2057006321323 0 680.2057006321323 0 2.724972371972605 0 0 0 0 0 0 0.4247425010840047 QQ[Q{I|L}] 1.3568 - 248 + NaN NaN 139749.2 NaN 12875 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16400 70.485 NaN 245970 35 0 9073.9 0.261 + 29366 TYQDIFRDF 9 66 602.7855331403102 1203.5565133474204 2 602.7849731445312 MULTI HCD FTMS 0 0 0 16393 40571.984375 0.19047593547778954 13 -0.29364013671875 7 Unmodified _TYQDIFRDF_ ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF 28.233623360808718 0.11935903763491834 2 [YT]QD{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 9 0 + 51.634 0 0 4.2901 4.2901 85.936 0 0 0 24.466584062177432 6.439389643433628 6.439389643433628 9.208187539523749 0 1.4520534381044503 2 0 0 + + [YT]QD{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT][AG]D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT]QQQ{M(Oxidation (M))|F}YN{I|L};[YT]QQQ{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YT][YR][DP]YN{I|L};[YT][AG]QQ{M(Oxidation (M))|F}YN{I|L};[YT][{M(Oxidation (M))|F}T]A[PS]RD{M(Oxidation (M))|F};[YT][YR][DP]KD{M(Oxidation (M))|F};[YT][AG]QQ{M(Oxidation (M))|F}KD{M(Oxidation (M))|F};[YT]QQQ{[QV]|[N{I|L}]|[RA]|[KV]}Y{M(Oxidation (M))|F} 4.2901;3.525;3.3374;3.0767;2.6294;2.5723;2.5149;2.3686;2.3116;1.869 +;-;-;-;-;-;-;-;-;- + 337 + NaN NaN 122557.8 NaN 12876 3522 16393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16402 70.49 NaN 281160 35 0 16196 0.327 + 5848 FPDEFHLQTL 10 78 623.8085109557719 1245.6024689783437 2 623.808837890625 MULTI HCD FTMS 0 0 0 16401 163574.078125 0.42456433730311555 6 -0.12709808349609375 1 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 76.82478488871298 0.009498572185128612 2 [YN][VG]T{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QT{I|L} 11 7 + 48.782 0 0 3.9164 3.9164 81.665 0 0 0 8.728048057191657 22.874992588081586 8.728048057191657 1.7609125905568135 0 0.5 1.2218487496163564 0.9247425010840047 0.28872548999643577 [YN][VG]T{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QT{I|L};[YN]A[VS]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QT{I|L};[YN][VG]T{[CT]|[{M(Oxidation (M))|F}G]}Q{M(Oxidation (M))|F}T{I|L};[YN]A[VS]{[CT]|[{M(Oxidation (M))|F}G]}Q{M(Oxidation (M))|F}T{I|L};[YN][VG]T{[CT]|[{M(Oxidation (M))|F}G]}QT{M(Oxidation (M))|F}{I|L};[WR][YV]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}T{I|L};[YN]A[VS]{[CT]|[{M(Oxidation (M))|F}G]}QT{M(Oxidation (M))|F}{I|L};[YN][VG]T{[CT]|[{M(Oxidation (M))|F}G]}QT{I|L}{M(Oxidation (M))|F};[YN]A[VS]{[CT]|[{M(Oxidation (M))|F}G]}QT{I|L}{M(Oxidation (M))|F};[WR][YV]{[{M(Oxidation (M))|F}D]|MM}T{M(Oxidation (M))|F}{I|L} 3.9164;3.775;3.1923;3.051;1.998;1.9423;1.8566;1.4962;1.3549;0.74798 -;-;-;-;-;-;-;-;-;- 382 NaN NaN 134960.6 NaN 12877 3523 16401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16403 70.495 NaN 331610 35 0 35249 0.262 + 10185 IFTDVALKF 9 63 527.3024262867368 1052.5902996402735 2 527.3029174804688 MULTI HCD FTMS 0 0 0 16401 168669.625 0.4784603962919379 3 -0.05850982666015625 2 Unmodified _IFTDVALKF_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 125.52916310638031 0.0008761121089336018 2 {I|L}{M(Oxidation (M))|F}TDVA{I|L}K{M(Oxidation (M))|F} 9 0 + 115.36 0 0 10.96 10.96 97.842 0 0 0 95.89570963353275 16.478174818886373 16.478174818886373 25.24227503252014 0 3.1237125054200234 1.3979400086720375 0.7302046884880937 0.4247425010840047 + + {I|L}{M(Oxidation (M))|F}TDVA{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TDVA{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TDVAK{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{[MG]|[TS]}{I|L}K{M(Oxidation (M))|F};{I|L}[TP][YT]A{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{[MG]|[TS]}K{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVV{[QS]|[NT]}{I|L}{M(Oxidation (M))|F} 10.96;8.5615;7.397;5.8246;5.4302;4.6601;2.8109 +;+;-;-;-;-;- + 472 + NaN NaN 140238.3 NaN 12878 3523 16401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16404 70.498 NaN 279720 35 0 12397 0.261 + -1 SYPFERNGCI 10 76 621.7823961721873 1241.5502394111745 2 621.2744140625 MULTI HCD FTMS 0 0 0 16401 90578.25 0.12635771691690562 53 -1.39111328125 3 Carbamidomethyl (C) _SYPFERNGC(Carbamidomethyl (C))I_ REV__ENST00000381844.8_1_2:9724735-9724870:-|nuORF 10.073929032068715 0.4168838835836452 2 [YN]AM{M(Oxidation (M))|F}[RP]A 8 -1 53.479 0 0 4.3075 0 0 0 288.0616854303344 288.0616854303344 33.09385934535719 0 0 0 0 1.6307196863200843 1.3979400086720375 0 0.3807196863200844 [YN]AM{M(Oxidation (M))|F}[RP]A 4.3075 - 490 + NaN NaN 121651.9 NaN 12879 3523 16401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16405 70.501 NaN 245090 35 0 44026 0.261 -1 MHGAQLVTTLF 11 52 617.3189891228986 1232.6234253125972 2 617.8062133789062 MULTI HCD FTMS 0 0 0 16401 18674.53515625 1 0 0 4 Oxidation (M) _M(Oxidation (M))HGAQLVTTLF_ ENSG00000144647|ENST00000344697|POMGNT2 2.735195868890462 0.4069250265843076 2 V 1 -1 6.9897 0 0 0.56706 0 0 183.09216476214903 947.4407933138174 1130.5329580759665 0 0 0 0 0 0 0 0 0 V 0.56706 + + 22 + NaN NaN 122471 NaN 12880 3523 16401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16406 70.505 NaN 138550 35 0 8237.6 0.262 -1 RDCDWTIT 8 48 533.7349746828697 1065.4553964325394 2 533.7359008789062 MULTI HCD FTMS 0 0 0 16401 44167.109375 0.40740061746517586 6 -0.12709808349609375 5 Carbamidomethyl (C) _RDC(Carbamidomethyl (C))DWTIT_ CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-5|CSMD3 4.3292370932331545 0.5355693454741696 2 KC(Carbamidomethyl (C))R 3 -1 18.962 0 0 1.7797 0 0 603.23442275215 0 603.23442275215 0 3.912691062686985 0 0 0 0 0 0 0 KC(Carbamidomethyl (C))R 1.7797 - 21 NaN NaN 113173.9 NaN 12881 3523 16401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16408 70.51 NaN 1540800 35 0 181960 0.327 -1 CIKKSIITW 9 111 574.826831289186 1147.6391096451719 2 575.81640625 MULTI HCD FTMS 0 0 0 16407 26006.052734375 0.6084673253876272 3 -0.06523895263671875 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))IKKSIITW_ ENST00000476395.1_1_20:57015848-57019288:+|nuORF 26.88365393820708 0.12808753336095696 2 T{I|L}AE{I|L}{I|L}TW 8 -1 70.228 0 0 6.1193 0 0 202.1112147143262 0 202.1112147143262 0 46.8976493261708 0 0 0 0 0 1.9361818737241734 0 T{I|L}AE{I|L}{I|L}TW 6.1193 - 4592 + NaN NaN 323690.8 NaN 12882 3524 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16409 70.514 NaN 479930 35 0 41420 0.261 + 6054 FPDWREDVL 9 84 588.7880405952984 1175.5615282573967 2 588.787841796875 MULTI HCD FTMS 0 0 0 16407 205997.71875 0.6588153964224689 4 -0.094757080078125 2 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 57.24910588100465 0.021429789259086996 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L} 9 0 + 60.244 0 0 5.1247 5.1247 89.54 0 0 0 20.64183634178727 38.02046884880937 20.64183634178727 16.264348410275545 0 1.6237125054200234 2 0.2614393726401688 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREVVE;[DP]{M(Oxidation (M))|F}WREDV{I|L};[DP]WR{M(Oxidation (M))|F}EDV{I|L};{M(Oxidation (M))|F}PTE{[VA]|[{I|L}G]}[HQ]T{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}WREVVE;[DV]E[WR][{M(Oxidation (M))|F}V]PE;[DP]WR{M(Oxidation (M))|F}EVVE;[DV]E[WR]DP{M(Oxidation (M))|F}{I|L};[DV]E[WR]D{M(Oxidation (M))|F}P{I|L} 5.1247;3.7411;2.806;2.2178;2.1455;1.4224;1.1337;0.8343;0.66949;0.30713 +;-;-;-;-;-;-;-;-;- + 794 NaN NaN 157516 NaN 12883 3524 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16410 70.518 NaN 402650 35 0 21257 0.261 -1 FVYCNERSL 9 78 594.280796395519 NaN 0 594.2695922851562 PEAK HCD FTMS 0 0 0 16407 18152.076171875 0.5669957372810256 1 -0.01615142822265625 3 Carbamidomethyl (C) _FVYC(Carbamidomethyl (C))NERSL_ ENSG00000185070|ENST00000330753|FLRT2 25.399314129420986 0.1511568710901456 2 TW 2 -1 10.969 0 0 0.92446 0 0 165.10155836916493 731.2934270656797 896.3949854348446 0 0 0 0 0 0 0 0 0 TW 0.92446 - 81 + NaN NaN 145382.3 NaN 12884 3524 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16411 70.521 NaN 215460 35 0 7981.9 0.261 + -1 LYAADSFSCLL 11 68 630.3021038455732 1258.5896547579464 2 630.7872314453125 MULTI HCD FTMS 0 0 0 16407 9792.1484375 0.09792024507189831 7 -0.14997100830078125 4 Carbamidomethyl (C) _LYAADSFSC(Carbamidomethyl (C))LL_ REV__ENSG00000172159|ENST00000304195|FRMD3;REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant;REV__nc|ENSG00000172159|A2A2Y4-2|FRMD3;REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3 8.745405648335112 0.3805662881914433 2 [YN]{I|L}[R{M(Oxidation (M))|F}]WCD 8 -1 35.411 0 0 2.8136 0 0 0 158.060157009783 158.060157009783 28.421459525132278 0 0 0 0 0 1.6989700043360187 0 0.3807196863200844 [YN]{I|L}[R{M(Oxidation (M))|F}]WCD 2.8136 - 382 NaN NaN 115933.5 NaN 12885 3524 16407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16413 70.526 NaN 319070 35 0 40867 0.326 + 21092 PNELVDLTL 9 56 507.2791513137693 1012.5437496943387 2 507.2794189453125 MULTI HCD FTMS 0 0 0 16412 165808.546875 0.2719408614467742 8 -0.18616485595703125 1 Unmodified _PNELVDLTL_ REV__ENSG00000176915|ENST00000357997|ANKLE2;REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 24.990960013464015 0.14443998892849796 2 D{I|L}T{I|L} 4 -1 50.433 0 0 4.9808 0 0 552.2908718030034 0 552.2908718030034 0 39.97547537623447 0 0 0 1.4247425010840047 0 0.4247425010840047 0 D{I|L}T{I|L} 4.9808 + + 57 NaN NaN 140373.2 NaN 12886 3525 16412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16414 70.53 NaN 329790 35 0 20061 0.261 + 8620 HDQDICVYIH 10 73 621.7823961721873 1241.5502394111745 2 621.78369140625 MULTI HCD FTMS 0 0 0 16412 81496.671875 0.015019424110569592 55 -1.4665985107421875 2 Unmodified _HDQDICVYIH_ ENST00000259526.3_1_8:120436340-120436517:+|nuORF 13.90604991867851 0.3810395177745597 2 [YN]AM{M(Oxidation (M))|F}[RP]A 8 10 57.554 0 0 4.6357 0 0 0 288.06223474674067 288.06223474674067 26.65878117603789 0 0 0 0 1.6747425010840047 2 0 0.3807196863200844 [YN]AM{M(Oxidation (M))|F}[RP]A 4.6357 - 1338 + NaN NaN 139345.6 NaN 12887 3525 16412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16415 70.534 NaN 155270 35 0 10859 0.261 + 31823 VYMDWYEKF 9 55 640.7863644925661 1279.5581760519322 2 641.2882690429688 MULTI HCD FTMS 0 0 0 16412 52625.4375 0.06738466214595637 36 -0.9464035034179688 3 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 28.494509381512117 0.11816142465008336 2 [YV]MDGW{I|L} 7 5 50.974 0 0 3.9837 0 0 0 412.1673678033813 412.1673678033813 28.01493210686104 0 0 0 0 0.7742275032520141 2 0 0 [YV]MDGW{I|L} 3.9837 - 77 + NaN NaN 136197.9 NaN 12888 3525 16412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16416 70.537 NaN 173940 35 0 21607 0.261 + -1 FEELMEVIL 9 55 569.7896034843803 1137.5646540355606 2 569.7894287109375 MULTI HCD FTMS 0 0 0 16412 49969.1796875 0.4560648473572068 10 -0.23193359375 4 Oxidation (M) _FEELM(Oxidation (M))EVIL_ REV__ENSG00000218819|ENST00000405799|TDRD15 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 25.217 0 0 2.2167 0 0 893.3860302387789 0 893.3860302387789 0 16.264100213633768 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.2167 + + 78 NaN NaN 147248.8 NaN 12889 3525 16412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16417 70.54 NaN 155080 35 0 50374 0.264 + 23478 RLWGKYPYF 9 36 410.55363153528367 1228.639065206051 3 410.55364990234375 MULTI HCD FTMS 0 0 0 16412 51878.71875 0.09991604043059522 29 -0.7462997436523438 5 Unmodified _RLWGKYPYF_ ENST00000469686.5_1_3:9958999-9959435:+|nuORF 4.897010918128616 0.31389406404703984 2 Y{M(Oxidation (M))|F} 2 7 30.969 0 0 2.5206 0 0 900.4977210671824 0 900.4977210671824 0 30.969100130080562 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F} 2.5206 + + 8 + NaN NaN 123614.8 NaN 12890 3525 16412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16418 70.544 NaN 133160 35 0 23606 0.261 + 20850 PIAYDGEVL 9 54 488.75294392211407 975.4913349110282 2 488.7527160644531 MULTI HCD FTMS 0 0 0 16412 35021.38671875 0.14341041884116956 -6 0.14349365234375 6 Unmodified _PIAYDGEVL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 10.823927491677226 0.26684000660059787 2 HWV{I|L} 4 7 37.251 0 0 3.8186 0 0 422.19771010566564 0 422.19771010566564 0 30.42796583575644 0 0 0 0.8807196863200843 0 0 0 HWV{I|L} 3.8186 - 22 NaN NaN 106001.6 NaN 12891 3525 16412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16420 70.549 NaN 469190 35 0 24379 0.327 + 2930 DYSPYFKTI 9 79 567.279159143842 1132.5437653544839 2 567.2796020507812 MULTI HCD FTMS 0 0 0 16419 158182.03125 0.44446131305540926 61 -1.6503219604492188 1 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 47.7319792270244 0.034743597693959835 2 {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 9 0 {[YD]|[{M(Oxidation (M))|F}M]} + + 40.499 22.843 8.2143 3.576 3.576 60.531 0 0 0 0 11.840700995863429 0 0 0 2.0356668758921828 0 0.3494850021680094 0.3494850021680094 + + {[YD]|[{M(Oxidation (M))|F}M]}SPY{M(Oxidation (M))|F}KT{I|L} 3.576 + + 250 + NaN NaN 186684.5 NaN 12892 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16421 70.553 NaN 188520 35 0 38782 0.262 + 15989 LPQPSSIVL 9 41 477.28691321697625 952.5592735007525 2 477.2869567871094 MULTI HCD FTMS 0 0 0 16419 134266.609375 0.2323249913240378 9 -0.20905303955078125 2 Unmodified _LPQPSSIVL_ ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF 12.240655878213236 0.2545997876781172 2 {I|L}V{I|L} 3 6 28.812 0 0 3.0247 0 0 609.3111439435562 0 609.3111439435562 0 11.822581265925436 0 0 0 0.5 0 0 0 + {I|L}V{I|L} 3.0247 + + 8 NaN NaN 113219.1 NaN 12893 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16422 70.557 NaN 176260 35 0 35646 0.261 + -1 MWTAAAELL 9 56 511.25485591142274 1020.4951588896455 2 511.25457763671875 MULTI HCD FTMS 0 0 0 16419 58238.265625 0.11753032281565552 17 -0.43527984619140625 3 Oxidation (M) _M(Oxidation (M))WTAAAELL_ REV__ENST00000559367.1_1_4:74034679-74088744:-|nuORF 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5174 0 0 855.4157196580034 0 855.4157196580034 0 10.880456295278407 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5174 + + 13 + NaN NaN 117031.1 NaN 12894 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16423 70.56 NaN 219200 35 0 16026 0.261 -1 MKLQTQITSM 10 73 598.801975127957 1195.589397322714 2 598.8021240234375 MULTI HCD FTMS 0 0 0 16419 117087.3203125 0.9319991895863085 -4 0.08458709716796875 4 Oxidation (M) _M(Oxidation (M))KLQTQITSM_ ENSG00000147488|ENST00000689386|ST18 12.872603262515298 0.3907060291096084 2 {I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 29.45 0 0 2.4633 0 0 745.3761994795827 0 745.3761994795827 0 17.768024924119672 0 0 0 1.3252574989159953 0 0 0 {I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 2.4633 + + 95 NaN NaN 122629.4 NaN 12895 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16424 70.563 NaN 164520 35 0 9886.4 0.261 -1 KYMDVQFDF 9 56 604.7687571227752 1207.5229613123504 2 604.7693481445312 MULTI HCD FTMS 0 0 0 16419 74785.375 0.7034810765430001 20 -0.5138702392578125 5 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 18.373094154950223 0.20161688160436167 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 -1 45.745 0 0 3.7884 0 0 666.3041249005875 0 666.3041249005875 0 30.823872065994564 0 0 0 1.3807196863200843 0 0 0 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.7884 - 267 NaN NaN 123451 NaN 12896 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16425 70.567 NaN 245200 35 0 22052 0.261 + 28615 TQPGTGWVQF 10 73 560.7747265838137 1119.5349002344274 2 561.27734375 MULTI HCD FTMS 0 0 0 16419 27038.533203125 0.5594495933080695 -4 0.08458709716796875 6 Unmodified _TQPGTGWVQF_ ENSG00000157191|ENST00000337132|NECAP2;nc|ENSG00000157191|Q9NVZ3-4|NECAP2 22.65808497894818 0.29917593477267174 2 VQ{M(Oxidation (M))|F} 3 7 38.984 0 0 3.4822 0 0 727.3290032187124 0 727.3290032187124 0 26.335397290468375 0 0 0 1.3807196863200843 0 0 0.3494850021680094 + VQ{M(Oxidation (M))|F} 3.4822 + + 239 + NaN NaN 119551.4 NaN 12897 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16426 70.57 NaN 259000 35 0 18379 0.262 -1 LEVPDMNI 8 68 473.7311445069164 945.4477360806328 2 473.7311096191406 MULTI HCD FTMS 0 0 0 16419 69756.421875 0.22352125314185173 17 -0.43527984619140625 7 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 28.486842064014134 0.3788298654084067 2 {[QN]|[E{I|L}]|[KN]}V[YN]{I|L}T 7 -1 33.375 0 0 3.5301 0 0 0 109.98137653242455 109.98137653242455 3.326053680547787 0 0 0 0 0 2 0.6307196863200843 0 {[QN]|[E{I|L}]|[KN]}V[YN]{I|L}T 3.5301 - 271 NaN NaN 129756.6 NaN 12898 3526 16419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16428 70.575 NaN 2116200 35 0 584000 0.326 + 12810 KYEELFPAF 9 73 572.2897229524438 1142.5648929716874 2 572.2901000976562 MULTI HCD FTMS 0 0 0 16427 1301135.25 0.21334253239792658 7 -0.14997100830078125 1 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 75.76082778847304 0.0072241045649327805 2 [VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F} 10 6 + 92.128 0 0 8.0632 8.0632 89.382 0 0 0 12.284700126913393 15.50907468880581 12.284700126913393 4.503187623076954 0 1.9247425010840047 0 1.3494850021680094 0 [VS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[VS]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YK]EE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}SE{I|L}[YV]A{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}SE{I|L}{M(Oxidation (M))|F}[VS]{M(Oxidation (M))|F} 8.0632;7.6691;6.9881;3.1578;2.4567 -;-;+;-;- + 730 NaN NaN 405635.8 NaN 12899 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16429 70.579 NaN 977040 35 0 261420 0.261 + 11588 IYTDPRLLI 9 73 552.3264929919228 1102.6384330506455 2 552.3267822265625 MULTI HCD FTMS 0 0 0 16427 410155.96875 0.06379076633734894 15 -0.37963104248046875 2 Unmodified _IYTDPRLLI_ REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A;REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-2|TOP2A;REV__nc|ENSG00000131747|P11388-3|TOP2A;REV__nc|ENSG00000131747|P11388-4|TOP2A 25.399314129420986 0.14091189997036632 2 {I|L}{I|L}[HK]TDV{M(Oxidation (M))|F} 8 -1 34.378 0 0 3.1178 0 0 131.0951384452797 0 131.0951384452797 0 8.704197296802718 0 0 0 0.5 0 0.805462187404089 0 {I|L}{I|L}[HK]TDV{M(Oxidation (M))|F} 3.1178 - 640 + NaN NaN 241424.2 NaN 12900 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16430 70.583 NaN 838500 35 0 53282 0.261 + 13095 KYLELCVDL 9 103 548.2915374141361 1094.568521895072 2 548.7933349609375 MULTI HCD FTMS 0 0 0 16427 414808.4375 0.38438605873652565 7 -0.14997100830078125 3 Unmodified _KYLELCVDL_ ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A 33.4449034751529 0.0954363425218424 2 D{I|L}QR{I|L}G{M(Oxidation (M))|F} 7 8 35.455 0 0 3.2392 0 0 247.11732003279604 0 247.11732003279604 0 -6.303834078233628 -6.303834078233628 0 0 0 0 0 0.2302046884880938 D{I|L}QR{I|L}G{M(Oxidation (M))|F} 3.2392 - 3178 + NaN NaN 213385.1 NaN 12901 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16431 70.586 NaN 458030 35 0 34987 0.261 + 22968 QYVYWLHML 9 73 634.8102300217877 1267.6059071103753 2 634.8103637695312 MULTI HCD FTMS 0 0 0 16427 263245.84375 0.5439190580908785 7 -0.14997100830078125 4 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 106.8454739257335 0.003457388669738163 2 [YQ]VYW{I|L}H 7 2 64.446 0 0 5.0841 0 0 0 275.1068514459594 275.1068514459594 17.10216800942254 0 0 0 0 1.7491348669726232 1.2218487496163564 0 0 + [YQ]VYW{I|L}H 5.0841 + + 542 + NaN NaN 164166 NaN 12902 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16432 70.589 NaN 332660 35 0 34974 0.263 + 10301 ILDPHVVLL 9 64 509.81825474002494 1017.6219565468499 2 509.8183898925781 MULTI HCD FTMS 0 0 0 16427 96812.328125 0.3203512101965758 -4 0.084716796875 5 Unmodified _ILDPHVVLL_ ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF 48.345845343767074 0.03388484103555672 2 {I|L}{I|L}D[YR]{I|L}{I|L}{I|L} 8 4 + 57.172 0 0 5.6182 5.6182 91.531 0 0 0 0.2119370881193916 41.9825221775622 0.2119370881193916 28.979400086720375 0 1.3807196863200843 1.6989700043360187 0 0 {I|L}{I|L}D[YR]{I|L}{I|L}{I|L};[{I|L}V]E[YR]{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YR]{I|L}{I|L}{I|L};[{I|L}V][YG]{[QN]|[E{I|L}]|[KN]}V{I|L}{I|L} 5.6182;2.7704;2.6926;0.80484 -;-;-;- 123 NaN NaN 131987.5 NaN 12903 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16433 70.593 NaN 515940 35 0 50411 0.261 + 8001 GFLSFRGALF 10 85 557.8058795878941 1113.597206242588 2 558.2967529296875 MULTI HCD FTMS 0 0 0 16427 13089.83984375 0.5287432222703998 -1 0.02620697021484375 6 Unmodified _GFLSFRGALF_ REV__ENSG00000104331|ENST00000262644|BPNT2;REV__IMPAD1|p.D174Gfs*21|1|0.16|ENSG00000104331|chr8:56980047-56980066|GTGTAGCATCAAGTGGGTCA/-|frameshift_variant 22.736283301280096 0.29844449404982915 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS][HK]AA{I|L}{M(Oxidation (M))|F} 10 -1 + 34.135 0 0 3.0653 3.0653 86.046 0 0 0 0.947209416731809 13.192672072328904 0.947209416731809 11.50560227418346 0 0.4247425010840047 1.3979400086720375 0 0.3054621874040891 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS][HK]AA{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS][HK]AA{M(Oxidation (M))|F}{I|L} 3.0653;2.0321 -;- 653 NaN NaN 174722.3 NaN 12904 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16434 70.596 NaN 214200 35 0 64491 0.261 -1 0 50 637.385604845902 636.3783283793019 1 637.386474609375 MULTI HCD FTMS 0 0 0 16427 41087.46484375 0.3702844698510651 21 -0.5367202758789062 7 NaN NaN 2 G 1 -1 1.9897 0 0 0.31266 0 0 66.11125181855819 510.23328577213124 576.3445375906895 0 0 0 0 0 0 0 0 0 G 0.31266 - 4 + NaN NaN 118211.2 NaN 12905 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16435 70.599 NaN 83444 35 0 6898 0.264 -1 LACALEVVM 9 55 482.74516033520706 963.4757677372141 2 482.745361328125 MULTI HCD FTMS 0 0 0 16427 7378.0498046875 0.057034335031698344 23 -0.5924606323242188 8 Oxidation (M) _LACALEVVM(Oxidation (M))_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 21.74664581756881 0.17247014374749275 2 N[QP]EVV{M(Oxidation (M))|F} 7 -1 43.46 0 0 4.5108 0 0 132.10535569413054 0 132.10535569413054 0 30.2726570743409 0 0 0 1.3494850021680094 0 0 0 N[QP]EVV{M(Oxidation (M))|F} 4.5108 - 62 + NaN NaN 102387.3 NaN 12906 3527 16427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16437 70.604 NaN 2724700 35 0 220890 0.327 + 19824 NYAWVYYHL 9 92 614.7931119449629 1227.5716709567257 2 614.7930297851562 MULTI HCD FTMS 0 0 0 16436 1118540.375 0.017607873493986903 58 -1.5650558471679688 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 172.90653553480564 2.2447970467336844E-09 2 [YN]AWVYYH{I|L} 9 0 + 113.02 0 0 9.2066 9.2066 96.199 0 0 0 33.314243664528576 16.478174818886373 16.478174818886373 17.83809673312028 0 2.524227503252014 1.6989700043360187 0 2.5713337517843655 + + [YN]AWVYYH{I|L};[YN]WAVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]WAVW[YN]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YNVYYH{I|L};{[WN]|[YH]}YAVYYH{I|L};[YN][YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YH{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}YGGVYYH{I|L};[H{I|L}]D[QT]VCYH{I|L} 9.2066;7.7534;6.4927;6.4733;5.0202;4.9764;4.9636;4.6618;4.2263;3.9969 +;-;+;-;-;-;-;-;-;- + 1522 NaN NaN 506404.7 NaN 12907 3528 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16438 70.609 NaN 363850 35 0 41400 0.261 + 16769 LYDLDLGKF 9 78 542.289843448953 NaN 0 542.2901000976562 PEAK HCD FTMS 0 0 0 16436 180873.578125 1 0 0 2 Unmodified _LYDLDLGKF_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 71.70789743142352 0.005701989299776285 2 YD{I|L}D{I|L}GK 7 2 70.526 0 0 6.5147 0 0 113.08327427917114 162.05576502017814 275.1390392993493 0 0 0 0 0 2.9604093769761874 0 0 1.1861818737241734 + YD{I|L}D{I|L}GK 6.5147 + + 654 + NaN NaN 146027.9 NaN 12908 3528 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16439 70.612 NaN 175590 35 0 27790 0.261 + 5590 FLPVRVDVL 9 41 529.3236582929057 1056.6327636526114 2 529.3242797851562 MULTI HCD FTMS 0 0 0 16436 109702.8203125 1 0 0 3 Unmodified _FLPVRVDVL_ REV__ENSG00000132470|ENST00000200181|ITGB4;REV__ENST00000584025.1_1_17:73738673-73744941:+|nuORF;REV__nc|ENSG00000132470|P16144-2|ITGB4;REV__nc|ENSG00000132470|P16144-3|ITGB4;REV__nc|ENSG00000132470|P16144-4|ITGB4 10.823927491677226 0.26684000660059787 2 AV{I|L} 3 -1 30.445 0 0 2.8814 0 0 755.4324427002525 0 755.4324427002525 0 24.186252728754987 0 0 0 0.4247425010840047 0 0 0 AV{I|L} 2.8814 - 26 NaN NaN 115904.7 NaN 12909 3528 16436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16441 70.617 NaN 756550 35 0 75794 0.327 + 29430 TYTDRVFFL 9 82 581.3005218108478 1160.5864906884956 2 581.3007202148438 MULTI HCD FTMS 0 0 0 16440 362799.03125 0.08344336622892132 20 -0.5238189697265625 1 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 63.960520009940105 0.0120409805053046 2 [YT]T[RD]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 84.657 0 0 7.2944 7.2944 92.452 0 0 0 21.751736484954378 67.37720313996633 21.751736484954378 12.698405410982616 0 2.25 1.6989700043360187 0.805462187404089 0 + + [YT]T[RD]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]T[RD]V{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.2944;6.2002 +;- + 473 NaN NaN 197294.4 NaN 12910 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16442 70.622 NaN 883890 35 0 49865 0.261 + 7352 FVDETWQQL 9 114 583.2796905512496 1164.544828169299 2 583.7615356445312 MULTI HCD FTMS 0 0 0 16440 61564.32421875 0.15420757579801816 12 -0.30776214599609375 2 Unmodified _FVDETWQQL_ ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2 51.629811660486645 0.02929079705179888 2 EQCNAA{I|L}TW 9 9 47.267 0 0 4.0588 0 0 130.08640639371157 0 130.08640639371157 0 9.977007184916388 0 0 0 1.25 0 1.144599018282542 0 EQCNAA{I|L}TW 4.0588 - 8976 + NaN NaN 225902 NaN 12911 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16443 70.625 NaN 196210 35 0 35736 0.261 + 16166 LPVEDDIDL 9 44 514.7607331084466 1027.5069132836932 2 514.7609252929688 MULTI HCD FTMS 0 0 0 16440 82204.1484375 0.4711518251510269 -2 0.04238128662109375 3 Unmodified _LPVEDDIDL_ ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6;nc|ENSG00000143870|Q15084-3|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6 10.823927491677226 0.26684000660059787 2 {I|L}D{I|L} 3 6 31.198 0 0 3.0363 0 0 668.3008900373062 0 668.3008900373062 0 11.73393743112328 0 0 0 0.5 0 0 0 + {I|L}D{I|L} 3.0363 + + 31 NaN NaN 122543.6 NaN 12912 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16444 70.629 NaN 261430 35 0 19596 0.261 + 4503 EYISIALRI 9 64 539.31863139105 1076.6227098488998 2 539.3191528320312 MULTI HCD FTMS 0 0 0 16440 29510.58203125 0.05207478483565764 -2 0.04238128662109375 4 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 72.96794272382148 0.008127836904478181 2 [YE]{I|L}S{I|L}A{I|L}R{I|L} 9 0 + 60.555 0 0 5.6245 5.6245 90.99 0 0 0 9.216590673155736 9.216590673155736 9.216590673155736 21.958413409812316 0 1.6663865622122673 1.154901959985743 0 0 + + [YE]{I|L}S{I|L}A{I|L}R{I|L};{[QN]|[E{I|L}]|[KN]}YS{I|L}A{I|L}R{I|L} 5.6245;3.5849 +;- + 340 + NaN NaN 116444.2 NaN 12913 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16445 70.632 NaN 406260 35 0 24379 0.261 -1 MKLQTQITSM 10 100 598.801975127957 1195.589397322714 2 598.7998657226562 MULTI HCD FTMS 0 0 0 16440 103600.2890625 0.8246442500302847 -1 0.0128631591796875 5 Oxidation (M) _M(Oxidation (M))KLQTQITSM_ ENSG00000147488|ENST00000689386|ST18 31.26834338654808 0.2211790902911672 2 H{I|L}{I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 6 -1 39.746 0 0 3.3243 0 0 495.25157363105626 0 495.25157363105626 0 11.329131673969606 0 0 0 1.2059771852360797 0 0.3494850021680094 0 H{I|L}{I|L}T{[MS]|[{M(Oxidation (M))|F}A]} 3.3243 - 334 NaN NaN 154624.6 NaN 12914 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16446 70.635 NaN 224570 35 0 15917 0.261 + 10186 IFTDVALKF 9 52 527.3024262867368 1052.5902996402735 2 527.8045043945312 MULTI HCD FTMS 0 0 0 16440 24125.0546875 0.13737044035044685 9 -0.23212432861328125 6 Unmodified _IFTDVALKF_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 43.85829265575387 0.04763305254408404 2 A{I|L}K{M(Oxidation (M))|F} 4 5 36.67 0 0 3.4838 0 0 575.2949027670298 0 575.2949027670298 0 36.18562527100117 0 0 0 0.9247425010840047 0 0 0 + A{I|L}K{M(Oxidation (M))|F} 3.4838 + + 24 + NaN NaN 123794.4 NaN 12915 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16447 70.639 NaN 211950 35 0 11333 0.261 + 6615 FPLQFGREVL 10 64 603.3367467188287 1204.6589405044574 2 603.3365478515625 MULTI HCD FTMS 0 0 0 16440 39507.7109375 0.46945812862758757 3 -0.065185546875 7 Unmodified _FPLQFGREVL_ ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1 18.721224879955976 0.3359999958351898 2 {M(Oxidation (M))|F}Q{I|L}PE 5 7 23.32 0 0 1.9358 0 0 572.329393455275 0 572.329393455275 0 3.85635503004492 0 0 0 0.28872548999643577 0 0 0 {M(Oxidation (M))|F}Q{I|L}PE 1.9358 - 216 NaN NaN 120337.8 NaN 12916 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16448 70.642 NaN 107330 35 0 12226 0.262 + 3895 EPPPEFEF 8 43 496.22376061431424 990.4329682954285 2 496.2242736816406 MULTI HCD FTMS 0 0 0 16440 42609.56640625 0.6418123574565752 -2 0.04238128662109375 8 Unmodified _EPPPEFEF_ ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant 13.50788311687929 0.4944073034352369 2 {M(Oxidation (M))|F} 1 7 21.99 0 0 2.2202 0 0 825.3542462268723 0 825.3542462268723 0 4.4985554728557275 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.2202 + + 14 + NaN NaN 103023.5 NaN 12917 3529 16440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16450 70.647 NaN 1526200 35 0 96956 0.326 + 611 APFKFDMEL 9 121 549.2703749551587 1096.5261969771173 2 549.2706909179688 MULTI HCD FTMS 0 0 0 16449 599052.8125 0.7778189393250841 -1 0.02947235107421875 1 Unmodified _APFKFDMEL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 121.5340881639634 0.001118397630175091 2 AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DME{I|L} 9 0 + 67.332 0 0 6.1405 6.1405 85.094 0 0 0 2.135905178638396 2.135905178638396 2.135905178638396 2.135905178638396 0 2.721848749616356 0 1.6571406706489746 0 + + AP{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DME{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DME{I|L};[PA]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}DEM{I|L};AP{M(Oxidation (M))|F}[YG]{I|L}GME{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DME{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PA{M(Oxidation (M))|F}DME{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}KA{M(Oxidation (M))|F}DME{I|L};{I|L}{M(Oxidation (M))|F}MDG[TP]G{I|L}{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}MDG[TP]{I|L}G{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AK{M(Oxidation (M))|F}DEM{I|L} 6.1405;5.9457;5.202;5.0221;4.9209;4.7359;4.4196;4.3609;4.3377;4.1772 +;+;-;-;-;-;-;-;-;- + 17010 + NaN NaN 322594.6 NaN 12918 3530 16449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16451 70.651 NaN 186950 35 0 8642.6 0.261 + 5849 FPDEFHLQTL 10 66 623.8085109557719 1245.6024689783437 2 624.3104248046875 MULTI HCD FTMS 0 0 0 16449 42261.93359375 0.14272648978574803 13 -0.33721923828125 2 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 18.373094154950223 0.33925629317698053 2 CE{I|L}QT{I|L} 6 5 45.126 0 0 3.6228 0 0 540.2616859451871 0 540.2616859451871 0 45.12578788640525 0 0 0 0.5 0 0.5 0 CE{I|L}QT{I|L} 3.6228 - 33 NaN NaN 115652.3 NaN 12919 3530 16449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16452 70.655 NaN 122660 35 0 12702 0.261 -1 VEAPLVCREGE 11 51 629.8085765039586 1257.6026000747172 2 627.2992553710938 MULTI HCD FTMS 0 0 0 16449 33735.06640625 0.5716589154060112 -15 0.38539886474609375 3 Carbamidomethyl (C) _VEAPLVC(Carbamidomethyl (C))REGE_ ENSG00000103184|ENST00000251170|SEC14L5 2.735195868890462 0.4069250265843076 2 Y{M(Oxidation (M))|F}[KC] 4 -1 13.812 0 0 1.0983 0 0 698.33403212715 0 698.33403212715 0 2.843181179205061 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}[KC] 1.0983 - 15 NaN NaN 111871.9 NaN 12920 3530 16449 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16454 70.66 NaN 458970 35 0 36420 0.327 + 6055 FPDWREDVL 9 94 588.7880405952984 1175.5615282573967 2 588.7879028320312 MULTI HCD FTMS 0 0 0 16453 194885.234375 0.623275799949369 11 -0.29489898681640625 1 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 49.52724829834842 0.03223213920720493 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L} 9 0 + 53.354 0 0 4.5386 4.5386 88.694 0 0 0 13.62909938592346 33.648896679559 13.62909938592346 16.31933414454096 0 1.6677353201839438 1.3979400086720375 0.23965182871044374 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREDV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWREVVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[PG][YR]VPE;[DP]{M(Oxidation (M))|F}WREDV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DWR[{I|L}P]V{M(Oxidation (M))|F};[DP][WR]ED{M(Oxidation (M))|F}V{I|L};[DP][WR]{M(Oxidation (M))|F}EDV{I|L};[DP]{M(Oxidation (M))|F}[PG][YR]VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HK][C(Carbamidomethyl (C))M]P{M(Oxidation (M))|F}{I|L};[DP][WR]E{M(Oxidation (M))|F}DV{I|L} 4.5386;3.1504;2.9677;2.5822;2.3214;2.1858;1.8862;1.798;1.7317;1.6301 +;-;-;-;-;-;-;-;-;- + 536 NaN NaN 155551.7 NaN 12921 3531 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16455 70.664 NaN 514570 35 0 70502 0.261 + 3856 EPISVEVQL 9 68 507.2791513137693 1012.5437496943387 2 507.27947998046875 MULTI HCD FTMS 0 0 0 16453 266328 0.4368017639162878 14 -0.38005828857421875 2 Unmodified _EPISVEVQL_ ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 49.55428908609986 0.03219431099695407 2 {[QN]|[E{I|L}]|[KN]}N[VP]D{I|L}T{I|L} 9 6 + 55.014 0 0 5.4332 5.4332 87.606 0 0 0 4.223856733793738 22.04628427264403 4.223856733793738 9.208187539523749 0 1.2059771852360797 1.154901959985743 0.7302046884880937 0 {[QN]|[E{I|L}]|[KN]}N[VP]D{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}GG[VP]D{I|L}T{I|L};[Q{I|L}]D[VP]D{I|L}T{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}E[VP]D{I|L}T{I|L} 5.4332;4.5238;4.1692;4.0735 -;-;-;- 420 NaN NaN 166229 NaN 12922 3531 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16456 70.668 NaN 244260 35 0 14658 0.261 + 23120 RFCDNVWTF 9 68 594.268542038783 1186.522531144366 2 594.268310546875 MULTI HCD FTMS 0 0 0 16453 101583.2578125 0.30871464384506525 27 -0.7339324951171875 3 Unmodified _RFCDNVWTF_ ENSG00000140307|ENST00000396060|GTF2A2;ENST00000267869.8_1_15:59931333-59949661:-|nuORF 10.799506525563784 0.2670509983294061 2 [YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[NV]|[RG]}WT{M(Oxidation (M))|F} 9 3 + 38.82 0 0 3.2717 3.2717 87.01 0 0 0 2.622112082903257 28.362424760180446 2.622112082903257 14.717262228329574 0 1 1.6989700043360187 0 0 [YN]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[NV]|[RG]}WT{M(Oxidation (M))|F};[YN][QP]WW{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[WT]|[RM]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}WT{M(Oxidation (M))|F};{[WT]|[RM]}{[QS]|[NT]}WW{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2717;2.0314;1.6529;0.41251 -;-;-;- 120 NaN NaN 131969.1 NaN 12923 3531 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16457 70.671 NaN 209440 35 0 11248 0.261 + 34111 YNNWLQFEF 9 72 630.7878241196413 1259.5610953060825 2 630.7879028320312 MULTI HCD FTMS 0 0 0 16453 136169.859375 0.0354575282585426 61 -1.6701507568359375 4 Unmodified _YNNWLQFEF_ REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF 19.256988751693697 0.19398022840297344 2 [YN]A[{M(Oxidation (M))|F}V]VWC 8 -1 51.705 0 0 4.105 0 0 0 274.08910709047876 274.08910709047876 42.94917177197476 0 0 0 0 0.9476212463643423 1.6989700043360187 0 0.7614393726401688 [YN]A[{M(Oxidation (M))|F}V]VWC 4.105 - 598 NaN NaN 122390.4 NaN 12924 3531 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16458 70.674 NaN 408490 35 0 29564 0.261 + -1 YNNACFNLIGG 11 88 621.7823961721873 1241.5502394111745 2 621.7817993164062 MULTI HCD FTMS 0 0 0 16453 125580.6875 0.023143885047875217 61 -1.6701507568359375 5 Carbamidomethyl (C) _YNNAC(Carbamidomethyl (C))FNLIGG_ REV__ENSG00000100116|ENST00000248924|GCAT;REV__ENST00000478203.1_1_22:38203974-38209043:+|nuORF 13.90604991867851 0.33591854289260503 2 [YN]AMC(Carbamidomethyl (C)){I|L}N{I|L} 8 -1 63.766 0 0 5.136 0 0 0 259.07270227603755 259.07270227603755 28.023466860249684 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0.9916440611282626 [YN]AMC(Carbamidomethyl (C)){I|L}N{I|L} 5.136 - 3607 + NaN NaN 146231.6 NaN 12925 3531 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16459 70.678 NaN 111710 35 0 11775 0.261 + 31824 VYMDWYEKF 9 38 640.7863644925661 1279.5581760519322 2 640.7872924804688 MULTI HCD FTMS 0 0 0 16453 57355.49609375 0.057866705032685 41 -1.1165008544921875 6 Unmodified _VYMDWYEKF_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000480242.1_1_2:96950056-96950410:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 21.536976647645854 0.1742816388551942 2 [YV]M 3 6 34.705 0 0 2.7123 0 0 0 883.3619478815061 883.3619478815061 8.735899786366232 0 0 0 0 0.4247425010840047 2 0 0 + [YV]M 2.7123 + + 16 + NaN NaN 104525.8 NaN 12926 3531 16453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16461 70.682 NaN 1860000 35 0 243840 0.327 + 24129 RYAVEILTW 9 103 575.8161428575835 1149.6177327819669 2 575.8163452148438 MULTI HCD FTMS 0 0 0 16460 909180.0625 0.27906331948063984 4 -0.10809326171875 1 Unmodified _RYAVEILTW_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 99.75527289724121 0.004270341300239591 2 T{I|L}AE{I|L}{I|L}TW 8 3 85.236 0 0 7.4143 0 0 204.08922000837873 0 204.08922000837873 0 58.10353184424318 0 0 0 1 0 2.6131178558850543 0 T{I|L}AE{I|L}{I|L}TW 7.4143 - 3435 + NaN NaN 341790.8 NaN 12927 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16462 70.687 NaN 594630 35 0 52476 0.261 + 10173 IFSSSNKLTW 10 95 591.811529389551 1181.6085058459018 2 591.8114624023438 MULTI HCD FTMS 0 0 0 16460 211545.25 0.40494322257003784 4 -0.10809326171875 2 Unmodified _IFSSSNKLTW_ REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF 29.84058131909904 0.23356904650364865 2 T{I|L}{[QG]|[NA]}K{I|L}TW 8 -1 64.281 0 0 5.4401 0 0 236.08019792322142 0 236.08019792322142 0 54.5654743892395 0 0 0 2.524227503252014 0 0.850576203518622 0.23965182871044374 T{I|L}{[QG]|[NA]}K{I|L}TW 5.4401 - 746 + NaN NaN 172782.4 NaN 12928 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16463 70.69 NaN 520870 35 0 38996 0.261 + 5334 FFPSLPGLTW 10 96 582.8070541773741 1163.599555421548 2 582.8060302734375 MULTI HCD FTMS 0 0 0 16460 182420.390625 0.4264544699622752 4 -0.10809326171875 3 Unmodified _FFPSLPGLTW_ REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF 30.636539890814138 0.2266618088935899 2 {[CT]|[{M(Oxidation (M))|F}G]}T{I|L}ANK{I|L}DW 10 -1 + 66.776 0 0 5.7387 5.7387 84.88 0 0 0 0 0 0 3.0464403079219338 0 1.7614393726401687 0 0.4247425010840047 0 {[CT]|[{M(Oxidation (M))|F}G]}T{I|L}ANK{I|L}DW;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}ANAA{I|L}TW;[{M(Oxidation (M))|F}T]A{I|L}KNA{I|L}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}AGGK{I|L}DW;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}QQA{I|L}TW;{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}AAGGA{I|L}TW;[{M(Oxidation (M))|F}T]A{I|L}KGGA{I|L}TW;{[WT]|[RM]}{I|L}[MT]{I|L}{I|L}TW;{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]TNAA{I|L}TW;{[CT]|[{M(Oxidation (M))|F}G]}T[RV]NA{I|L}T[VS] 5.7387;5.4769;5.2734;4.9511;4.9118;4.6924;4.4858;4.3943;4.2075;4.1889 -;-;-;-;-;-;-;-;-;- 2241 + NaN NaN 175368.7 NaN 12929 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16464 70.694 NaN 275190 35 0 92898 0.262 + 20851 PIAYDGEVL 9 49 488.75294392211407 975.4913349110282 2 488.7530517578125 MULTI HCD FTMS 0 0 0 16460 97873.34375 0.4007853067982183 1 -0.029510498046875 4 Unmodified _PIAYDGEVL_ ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}WV{I|L} 4 7 36.96 0 0 3.7889 0 0 412.20665175605626 0 412.20665175605626 0 29.9704350275697 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}WV{I|L} 3.7889 - 28 NaN NaN 127135 NaN 12930 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16465 70.697 NaN 300300 35 0 57789 0.261 + 10107 IFIDKIYSI 9 66 556.322904503317 1110.6312560734339 2 556.3236694335938 MULTI HCD FTMS 0 0 0 16460 55634.02734375 0.5190359436750791 -1 0.02283477783203125 5 Unmodified _IFIDKIYSI_ ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586 59.368380827593164 0.01846506874148156 2 {I|L}{M(Oxidation (M))|F}{I|L}D[K{I|L}]YS{I|L} 9 0 + 60.101 0 0 5.4115 5.4115 85.586 0 0 0 53.29112768334582 4.990823894397565 4.990823894397565 6.505149978319906 0 2.1989700043360187 0 1.1505149978319906 0.3807196863200844 + + {I|L}{M(Oxidation (M))|F}{I|L}D[K{I|L}]YS{I|L};{I|L}{M(Oxidation (M))|F}{I|L}D[K{I|L}]SY{I|L} 5.4115;4.8258 +;- + 159 + NaN NaN 133343.4 NaN 12931 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16466 70.7 NaN 70764 35 0 3874.9 0.261 + -1 MTPMEPTMI 9 30 533.7349746828697 1065.4553964325394 2 533.7355346679688 MULTI HCD FTMS 0 0 0 16460 18504.294921875 0.17068495728173502 15 -0.40631866455078125 6 Oxidation (M) _M(Oxidation (M))TPMEPTMI_ REV__ENSG00000196914|ENST00000397843|ARHGEF12;REV__nc|ENSG00000196914|Q9NZN5-2|ARHGEF12 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2294 0 0 900.4108387926941 0 900.4108387926941 0 13.098943791441968 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2294 + + 1 + NaN NaN 95950.9 NaN 12932 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16467 70.704 NaN 117030 35 0 5854.8 0.261 + 5850 FPDEFHLQTL 10 55 623.8085109557719 1245.6024689783437 2 623.8097534179688 MULTI HCD FTMS 0 0 0 16460 25117.34765625 0.06519327624966705 15 -0.40631866455078125 7 Unmodified _FPDEFHLQTL_ ENSG00000069329|ENST00000299138|VPS35;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF 7.101721422024254 0.4377131641736035 2 {I|L}Q[{I|L}T] 4 6 16.198 0 0 1.3004 0 0 772.3183460919937 0 772.3183460919937 0 2.430380486862944 0 0 0 0 0 0 0 + {I|L}Q[{I|L}T] 1.3004 + + 86 NaN NaN 96278.5 NaN 12933 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16468 70.707 NaN 122110 35 0 23758 0.264 + -1 YLFSCQVYCW 10 46 456.86397092130636 NaN 0 456.9070129394531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _YLFSC(Carbamidomethyl (C))QVYCW_ REV__ENST00000256255.10_2_8:29921247-29921394:-|nuORF 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107370.8 NaN 12934 3532 16460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16470 70.712 NaN 193260 35 0 9283.8 0.327 + 33773 YLFPETQWI 9 71 598.801975127957 1195.589397322714 2 598.8013916015625 MULTI HCD FTMS 0 0 0 16469 75195.8828125 0.598549028660238 3 -0.078582763671875 1 Unmodified _YLFPETQWI_ REV__ENSG00000106565|ENST00000326442|TMEM176B;REV__nc|ENSG00000106565|Q3YBM2-2|TMEM176B;REV__TMEM176B|p.E242Kfs*21|1|0.17|ENSG00000106565|chr7:150791620-150791621|-/CTTT|frameshift_variant 13.90604991867851 0.24021115267848145 2 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 31.483 0 0 2.6333 0 0 0 769.3515182546076 769.3515182546076 11.790521660407123 0 0 0 0 0.8807196863200843 1.5228787452803376 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.6333 + + 76 NaN NaN 121123.1 NaN 12935 3533 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16471 70.716 NaN 590020 35 0 35073 0.261 + 20518 PDPLMGPFLF 10 89 567.2896041842406 NaN 0 567.2798461914062 PEAK HCD FTMS 0 0 0 16469 6282.1171875 0.3565260534023586 -1 0.029510498046875 2 Unmodified _PDPLMGPFLF_ REV__ENST00000463551.1_1_X:118604271-118605018:+|nuORF 14.838274106304384 0.3224471714378502 2 S 1 -1 12.346 0 0 1.0901 0 0 767.4426289233655 275.06748377017817 1042.5101126935438 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 S 1.0901 - 110 + NaN NaN 176920.3 NaN 12936 3533 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16472 70.72 NaN 325700 35 0 20293 0.261 -1 MFRRVLTI 8 64 526.3056316203998 NaN 0 526.3140258789062 PEAK HCD FTMS 0 0 0 16469 7361.5908203125 0.46195120662827915 -1 0.029510498046875 3 Oxidation (M) _M(Oxidation (M))FRRVLTI_ ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF 11.640296217721598 0.38822285293237185 2 T{I|L}{M(Oxidation (M))|F} 3 -1 9.4858 0 0 0.90289 0 0 131.07424947650344 555.3040255182249 686.3782749947284 0 0 0 0 0 0 0 0 0 T{I|L}{M(Oxidation (M))|F} 0.90289 - 18 + NaN NaN 132249 NaN 12937 3533 16469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16474 70.725 NaN 2336700 35 0 185100 0.326 + 4718 EYQKVWNLF 9 123 613.8136476744669 1225.6127424157337 2 613.8146362304688 MULTI HCD FTMS 0 0 0 16473 1223952.375 0.1318918745193949 -5 0.1075897216796875 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 111.30893174071366 0.002728716625640322 2 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 82.124 0 0 6.7007 6.7007 87.546 0 0 0 6.000386763628427 8.010299956639813 6.000386763628427 6.000386763628427 0 2.555462187404089 1 2.6549471895720984 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE]QKVWN{M(Oxidation (M))|F}{I|L};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{M(Oxidation (M))|F}{I|L};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{M(Oxidation (M))|F}{I|L} 6.7007;6.2111;6.0471;5.9494;5.9494;5.5575;5.5065;5.4743;5.4633;5.2958 +;-;-;-;-;-;-;-;-;- + 8400 NaN NaN 443628.8 NaN 12938 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16475 70.729 NaN 1001700 35 0 249590 0.261 + 12811 KYEELFPAF 9 63 572.2897229524438 1142.5648929716874 2 572.2900390625 MULTI HCD FTMS 0 0 0 16473 475447.8125 0.07795749161496053 14 -0.386749267578125 2 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 49.55428908609986 0.03219431099695407 2 [Y{I|L}]G{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F} 10 5 + 106.24 0 0 9.2979 9.2979 89.171 0 0 0 0.31234684152074976 0.31234684152074976 0.31234684152074976 0.31234684152074976 0 2.305462187404089 1.6989700043360187 0.805462187404089 0 [Y{I|L}]G{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]D{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}{[SA]|[TG]}PE{M(Oxidation (M))|F};[Y{I|L}]GSE{I|L}W[Y{I|L}];[Y{I|L}]{[TV]|[{I|L}S]}{[DA]|[EG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}PE{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}{[SA]|[TG]}[EP]{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}[EP]{M(Oxidation (M))|F} 9.2979;9.2706;7.9354;7.1646;6.3875;6.1602;5.9845;5.6167;4.6683;4.6482 -;-;-;-;-;-;-;-;-;- 816 + NaN NaN 261563.1 NaN 12939 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16476 70.733 NaN 885630 35 0 168730 0.261 + 24589 RYLPDTLLL 9 76 552.3264929919228 1102.6384330506455 2 552.3267211914062 MULTI HCD FTMS 0 0 0 16473 230370.34375 0.03582905501533312 22 -0.6129379272460938 3 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 24.990960013464015 0.14443998892849796 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QP[KG]T{I|L}{I|L}{I|L} 10 4 + 40.403 0 0 3.6642 3.6642 81.255 0 0 0 0.061668675368622416 10.571968632008435 0.061668675368622416 1.4928876664371415 0 0.7614393726401688 1.2218487496163564 0.6747425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QP[KG]T{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV[DP]T{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]P[KG]T{I|L}{I|L}{I|L} 3.6642;3.5288;2.833 -;-;- 1291 NaN NaN 226504.2 NaN 12940 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16477 70.736 NaN 380540 35 0 30057 0.261 + 22969 QYVYWLHML 9 76 634.8102300217877 1267.6059071103753 2 634.8103637695312 MULTI HCD FTMS 0 0 0 16473 133023.421875 0.274853244782808 14 -0.386749267578125 4 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 86.12129899796855 0.004627603789867734 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]} 10 8 + 61.756 0 0 4.8719 4.8719 87.552 0 0 0 1.6630926501522225 12.651180662049981 1.6630926501522225 9.515449934959719 0 1.3851518780601921 1.5228787452803376 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WYV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}WVY{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[VG]WVY{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VR{[DA]|[EG]}VY{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AAG{[QN]|[E{I|L}]|[KN]}YV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW[VG]V{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VY{[DA]|[EG]}RV{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}AA{I|L}W{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[YD]|[{M(Oxidation (M))|F}M]} 4.8719;4.1212;4.1212;4.0201;3.2695;3.2695;3.1955;3.1275;3.1275;2.8166 -;-;-;-;-;-;-;-;-;- 498 NaN NaN 151736.9 NaN 12941 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16478 70.739 NaN 366080 35 0 36869 0.263 + 10302 ILDPHVVLL 9 74 509.81825474002494 1017.6219565468499 2 509.818359375 MULTI HCD FTMS 0 0 0 16473 80573.8125 0.2666180934229753 3 -0.095184326171875 5 Unmodified _ILDPHVVLL_ ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF 48.345845343767074 0.03388484103555672 2 {I|L}{I|L}D[YR]{I|L}{I|L}{I|L} 8 4 + 57.172 0 0 5.6182 5.6182 91.091 0 0 0 23.733718171813003 16.40978057358332 16.40978057358332 23.733718171813003 0 1.3807196863200843 2 0 0 {I|L}{I|L}D[YR]{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ]G{I|L}{I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V[YR]{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[YR]{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KQ][{I|L}A]V{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}][QA]V{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{I|L}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]{[QG]|[NA]}{I|L}{I|L}{I|L} 5.6182;3.2859;2.7704;2.5196;2.5038;1.5661;1.5594;1.2703 -;-;-;-;-;-;-;- 569 NaN NaN 147786.5 NaN 12942 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16479 70.743 NaN 442500 35 0 23769 0.261 + 22467 QQYAVFENIF 10 84 629.8085765039586 1257.6026000747172 2 630.3135375976562 MULTI HCD FTMS 0 0 0 16473 87735.9140625 0.1419858785320106 -4 0.07811737060546875 6 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 34.40172386719151 0.19398797222092762 2 NWTWN{I|L}{M(Oxidation (M))|F} 7 -1 54.25 0 0 4.3138 0 0 278.162889549025 0 278.162889549025 0 0.5423595621581256 0 0 0 0 0 2 0.7742275032520141 NWTWN{I|L}{M(Oxidation (M))|F} 4.3138 - 1852 NaN NaN 176346 NaN 12943 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16480 70.746 NaN 196730 35 0 16920 0.261 + 770 ASNDRPSVQF 10 73 560.7747265838137 1119.5349002344274 2 560.7740478515625 MULTI HCD FTMS 0 0 0 16473 39503.61328125 0.3235644596183888 6 -0.17069244384765625 7 Unmodified _ASNDRPSVQF_ REV__ENSG00000144724|ENST00000474889|PTPRG;REV__nc|ENSG00000144724|P23470-2|PTPRG;REV__PTPRG|p.L1089Wfs*4|1|0.19|ENSG00000144724|chr3:62273027-62273027|C/-|frameshift_variant 36.506200033944 0.17572556831573002 2 QSVT{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 8 -1 45.488 0 0 4.0631 0 0 165.07239539812514 0 165.07239539812514 0 35.310253421807545 0 0 0 0.8494850021680094 0 0.2614393726401688 1.0044321917401078 QSVT{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 4.0631 - 840 + NaN NaN 139211.5 NaN 12944 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16481 70.749 NaN 137920 35 0 47340 0.264 + 23479 RLWGKYPYF 9 39 410.55363153528367 1228.639065206051 3 410.5533447265625 MULTI HCD FTMS 0 0 0 16473 8791.7890625 0.01693258377600189 38 -1.0512619018554688 8 Unmodified _RLWGKYPYF_ ENST00000469686.5_1_3:9958999-9959435:+|nuORF 4.897010918128616 0.31389406404703984 2 Y{M(Oxidation (M))|F} 2 7 30.969 0 0 2.5206 0 0 900.4983314187449 0 900.4983314187449 0 25.48455006504028 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F} 2.5206 + + 7 + NaN NaN 113972.4 NaN 12945 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16482 70.753 NaN 44354 35 0 5350.5 0.261 + -1 ERWRCELLM 9 31 436.87928347030015 NaN 0 436.8792724609375 PEAK HCD FTMS 0 0 0 16473 8995.0791015625 0.3370766899375357 12 -0.3376922607421875 9 Carbamidomethyl (C),Oxidation (M) _ERWRC(Carbamidomethyl (C))ELLM(Oxidation (M))_ REV__CHST10-MAP4K4|3|fusion;REV__ENSG00000071054|ENST00000324219|MAP4K4;REV__nc|ENSG00000071054|O95819-3|MAP4K4;REV__nc|ENSG00000071054|O95819|MAP4K4 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99685.1 NaN 12946 3534 16473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16484 70.758 NaN 731850 35 0 118720 0.327 -1 0 81 615.4037194045799 614.3964429379798 1 616.4072265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 [YN]AW 4 -1 33.984 0 0 5.5314 0 0 0 77.15215517846732 77.15215517846732 30.885540741363187 0 0 0 0 0 1.6989700043360187 0 0.3807196863200844 [YN]AW 5.5314 - 32 NaN NaN 207183.4 NaN 12947 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16485 70.762 NaN 913690 35 0 43553 0.261 + -1 ELCTSRTNLF 10 103 620.8042753153898 1239.5939976975794 2 620.8036499023438 MULTI HCD FTMS 0 0 0 16483 292369.09375 0.26750613709674836 -3 0.07527923583984375 2 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))TSRTNLF_ REV__ENST00000480234.1_1_21:46285323-46293531:-|nuORF 32.78568957990786 0.20801173326193015 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]WN{I|L}{M(Oxidation (M))|F} 10 -1 + 72.647 0 0 5.8605 5.8605 86.59 0 0 0 19.20818753952375 14.146518864155126 14.146518864155126 6.906140654642812 0 1.3494850021680094 1.6989700043360187 1.805462187404089 0.3807196863200844 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]WN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D{I|L}[MN]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[TA]WGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D{[ET]|[MV]}QN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D{I|L}[MN]GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D[VG]VCN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}N[TA]WN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[{M(Oxidation (M))|F}T][VS]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[{M(Oxidation (M))|F}T]{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F} 5.8605;5.3034;5.1212;4.7534;4.5641;4.4509;4.311;4.2904;4.2836;4.2836 -;-;-;-;-;-;-;-;-;- 4830 NaN NaN 232918.9 NaN 12948 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16486 70.766 NaN 708930 35 0 39839 0.261 + 22468 QQYAVFENIF 10 100 629.8085765039586 1257.6026000747172 2 630.3110961914062 MULTI HCD FTMS 0 0 0 16483 139238.15625 0.22533362935331436 -3 0.07527923583984375 3 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 27.628801355627647 0.2527626205058048 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F} 11 -1 + 71.244 0 0 5.6651 5.6651 87.11 0 0 0 13.77257407381451 9.411980604406779 9.411980604406779 9.128498242810991 0 1.2887254899964358 1.6989700043360187 2 0 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{[DA]|[EG]}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}{[WS]|[C(Carbamidomethyl (C)){I|L}]}N{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[DS]|[MA]|[CV]|TT}{[WS]|[C(Carbamidomethyl (C)){I|L}]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G[YV][DG]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}GETWV[RH];{[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}T{[CP]|[EA]}[KC]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}T{[DA]|[EG]}V[RH];RR{[YC]|[HE]}TWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F}V{[DS]|[MA]|[CV]|TT}{[NV]|[RG]}{M(Oxidation (M))|F} 5.6651;4.9392;4.6591;3.9632;3.8759;3.2942;2.8385;2.599;2.452;2.4234 -;-;-;-;-;-;-;-;-;- 5780 NaN NaN 203558.8 NaN 12949 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16487 70.769 NaN 159780 35 0 73220 0.261 -1 0 38 564.3590818914352 563.3518054248351 1 564.3587646484375 MULTI HCD FTMS 0 0 0 16483 66429.0546875 0.2114269773546446 48 -1.3198471069335938 4 NaN NaN 2 S{M(Oxidation (M))|F} 2 -1 20.969 0 0 3.7222 0 0 311.24146714534135 0 311.24146714534135 0 19.3753063169585 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 3.7222 - 5 + NaN NaN 113023.8 NaN 12950 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16488 70.772 NaN 313830 35 0 24980 0.261 + 1264 AYLVNTYAL 9 61 514.2764490274378 1026.5383451216755 2 514.2765502929688 MULTI HCD FTMS 0 0 0 16483 126277.109375 0.6321574209634561 -4 0.098114013671875 5 Unmodified _AYLVNTYAL_ ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF 99.79894945604345 0.0042691968066200965 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L} 9 0 + 93.476 0 0 9.1059 9.1059 95.966 0 0 0 17.86098023303616 75.53038954433715 17.86098023303616 16.510234424404686 0 2.1989700043360187 1.2218487496163564 0.6382104921644451 0.7302046884880937 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGGTYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VNTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}VYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VGGTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNT{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGGT{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[QS]|[NT]}VYA{I|L};{[{M(Oxidation (M))|F}D]|MM}[TA]KVYA{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}VNT{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 9.1059;7.4976;7.3292;6.2841;5.7208;5.4343;4.5373;4.5073;3.9992;3.6575 +;-;-;-;-;-;-;-;-;- + 677 NaN NaN 129641.6 NaN 12951 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16489 70.776 NaN 219070 35 0 18005 0.261 -1 LEVPDMNI 8 56 473.7311445069164 945.4477360806328 2 473.73077392578125 MULTI HCD FTMS 0 0 0 16483 61494.3125 0.19704688717731964 26 -0.7144699096679688 6 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 2 {I|L}N{I|L} 3 -1 30.445 0 0 3.2202 0 0 587.2252152716893 0 587.2252152716893 0 14.70159303405957 0 0 0 0.4247425010840047 0 0 0 {I|L}N{I|L} 3.2202 - 111 NaN NaN 121567.7 NaN 12952 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16490 70.779 NaN 157810 35 0 9528.1 0.261 -1 MPEDLVEAL 9 43 516.7491919737682 1031.4838310143364 2 516.7489013671875 MULTI HCD FTMS 0 0 0 16483 42654.46875 0.43299166273838535 7 -0.19678497314453125 7 Oxidation (M) _M(Oxidation (M))PEDLVEAL_ ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;nc|ENSG00000133835|P51659-2|HSD17B4;nc|ENSG00000133835|P51659-3|HSD17B4 10.823927491677226 0.26684000660059787 2 EA{I|L} 3 -1 35.005 0 0 3.3937 0 0 700.3078480451187 0 700.3078480451187 0 25.713337517843655 0 0 0 0.8807196863200843 0 0 0 EA{I|L} 3.3937 + + 38 NaN NaN 113765.2 NaN 12953 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16491 70.782 NaN 377780 35 0 23595 0.261 + 16379 LSFGYCFLT 9 77 525.7517224772516 1049.4888920213032 2 525.7518310546875 MULTI HCD FTMS 0 0 0 16483 8637.1689453125 0.15345801094776654 7 -0.19678497314453125 8 Unmodified _LSFGYCFLT_ REV__ENST00000288986.6_2_3:136667407-136667713:+|nuORF 15.847184025352803 0.2234401846867398 2 {M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 4 -1 21.402 0 0 2.0393 0 0 567.2704604800907 0 567.2704604800907 0 4.323806533759438 0 0 0 0 0 0 0 {M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 2.0393 - 101 + NaN NaN 141246.2 NaN 12954 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16492 70.786 NaN 77174 35 0 4666 0.261 -1 LQFMQECAHY 10 42 643.2716064453125 NaN 0 643.2716064453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _LQFM(Oxidation (M))QECAHY_ ENSG00000073910|ENST00000542859|FRY;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant 1.4819007175156935 0.33891598740166873 2 Y 1 -1 2.4743 0 0 0.19262 0 0 828.46512275215 289.9868258111938 1118.4519485633439 0 0 0 0 0 0 0 0 0 Y 0.19262 + + 1 + NaN NaN 104363.2 NaN 12955 3535 16483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16494 70.791 NaN 650120 35 0 75102 0.327 + 7353 FVDETWQQL 9 102 583.2796905512496 1164.544828169299 2 583.7615966796875 MULTI HCD FTMS 0 0 0 16493 22025.23046875 0.05516924680128563 19 -0.5143966674804688 1 Unmodified _FVDETWQQL_ ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2 31.26834338654808 0.10542797264966089 2 [YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY 8 8 56.512 0 0 4.8527 0 0 0 161.09461097328509 161.09461097328509 3.969275291970824 0 0 0 0 0 1.6989700043360187 0.6139829889124311 1.3996498648046138 [YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VNY 4.8527 - 5454 NaN NaN 204652.1 NaN 12956 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16495 70.795 NaN 713100 35 0 30754 0.261 + 612 APFKFDMEL 9 101 549.2703749551587 1096.5261969771173 2 549.2706298828125 MULTI HCD FTMS 0 0 0 16493 121095.375 0.15723200721918537 5 -0.13448333740234375 2 Unmodified _APFKFDMEL_ ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF;nc|ENSG00000100030|P28482-2|MAPK1 32.037481411007896 0.10189719824197178 2 D{I|L}QR{I|L}G{M(Oxidation (M))|F} 7 8 37.924 0 0 3.4586 0 0 249.07348764807972 0 249.07348764807972 0 10.502669794978274 0 0 0 0 0 0 0 D{I|L}QR{I|L}G{M(Oxidation (M))|F} 3.4586 - 3408 + NaN NaN 196659.7 NaN 12957 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16496 70.799 NaN 550870 35 0 55520 0.261 + 29431 TYTDRVFFL 9 69 581.3005218108478 1160.5864906884956 2 581.3009033203125 MULTI HCD FTMS 0 0 0 16493 237424.65625 0.05460740199604517 27 -0.734039306640625 3 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 79.59630418116434 0.005983006570063981 2 [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 82.858 0 0 7.1394 7.1394 92.583 0 0 0 6.677353201839438 6.677353201839438 6.677353201839438 14.515449934959719 0 2.6237125054200234 1.6989700043360187 1.1549471895720984 0 + + [YT]TDRV{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]TDR{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[YT]TD{M(Oxidation (M))|F}RV{M(Oxidation (M))|F}{I|L} 7.1394;5.8887;4.7297 +;-;- + 516 NaN NaN 184756.5 NaN 12958 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16497 70.802 NaN 377040 35 0 36821 0.261 + 4504 EYISIALRI 9 57 539.31863139105 1076.6227098488998 2 539.3190307617188 MULTI HCD FTMS 0 0 0 16493 169963.1875 0.29991941228649965 5 -0.13448333740234375 4 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 99.75527289724121 0.004270341300239591 2 [YE]{I|L}S{I|L}A{I|L}R{I|L} 9 0 + 73.075 0 0 6.7874 6.7874 94.983 0 0 0 3.2010752059608905 3.2010752059608905 3.2010752059608905 73.07495965838001 0 2.1989700043360187 1.3979400086720375 2.504432191740108 0 + + [YE]{I|L}S{I|L}A{I|L}R{I|L} 6.7874 + + 150 NaN NaN 144785 NaN 12959 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16498 70.805 NaN 1375100 35 0 200100 0.263 + 6808 FPSDSLILGNY 11 90 409.2087879617534 1224.6045344854601 3 409.20892333984375 MULTI HCD FTMS 0 0 0 16493 47206.1875 0.2684223423069959 -1 0.03281402587890625 5 Unmodified _FPSDSLILGNY_ ENSG00000176009|ENST00000531618|ASCL3 9.243775137331637 0.3765410959215665 2 E[PS]{I|L}GYDG{I|L}K{M(Oxidation (M))|F} 11 9 + 47.981 0 0 3.9181 3.9181 90.015 0 0 0 30.652016147710675 16.575773191777934 16.575773191777934 47.98133048608694 0 0.8182503180159344 0 0.7059771852360797 0 E[PS]{I|L}GYDG{I|L}K{M(Oxidation (M))|F} 3.9181 - 460 + NaN NaN 294454.8 NaN 12960 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16499 70.809 NaN 150480 35 0 8149.2 0.261 -1 0 57 541.3235367953754 540.3162603287753 1 542.2891235351562 MULTI HCD FTMS 0 0 0 16493 8500.732421875 0.2854643291828481 -1 0.03281402587890625 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 114542.9 NaN 12961 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16500 70.812 NaN 405780 35 0 20740 0.261 + 19022 NAVYTFETL 9 70 529.2636305242078 1056.5127081152154 2 529.263916015625 MULTI HCD FTMS 0 0 0 16493 116768.59375 0.6109563525173493 -3 0.078582763671875 7 Unmodified _NAVYTFETL_ ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2 118.0683919894846 0.0016252157255221692 2 {[QG]|[NA]}VYT{M(Oxidation (M))|F}ET{I|L} 9 0 + 106.82 0 0 10.111 10.111 95.753 0 0 0 26.12704280191288 90.67655058219536 26.12704280191288 12.25772496747986 0 2.4247425010840047 1.6989700043360187 1.0484550065040281 0.3494850021680094 + + {[QG]|[NA]}VYT{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}VYTE{M(Oxidation (M))|F}T{I|L};{I|L}[NG]YT{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}[YT]V{M(Oxidation (M))|F}ET{I|L};{[QG]|[NA]}[YT]VE{M(Oxidation (M))|F}T{I|L};[KQ][YE]{M(Oxidation (M))|F}ET{I|L};[KQ][YE]E{M(Oxidation (M))|F}T{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[HS]V{[C(Carbamidomethyl (C))G]|[NC]}T{I|L};[{I|L}T]E[{M(Oxidation (M))|F}T]Y[NG]{I|L};[{I|L}T]E[{M(Oxidation (M))|F}T]YV{[QG]|[NA]} 10.111;8.9505;7.5926;6.8424;5.6821;5.3576;4.1974;2.1375;1.1507;0.53494 +;-;-;-;-;-;-;-;-;- + 468 NaN NaN 155048.3 NaN 12962 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16501 70.815 NaN 524610 35 0 86737 0.261 -1 KYMDINFDF 9 81 604.7684339401902 1207.5223149471803 2 604.7691040039062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _KYM(Oxidation (M))DINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 28.494509381512117 0.11816142465008336 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 -1 + 56.207 0 0 4.6547 4.6547 81.928 0 0 0 13.767186419914097 26.297568461734855 13.767186419914097 0.2422750325201406 0 1.25 1.6989700043360187 0 0.2614393726401688 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[YE]GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HT][NS]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[Y{I|L}]YND{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}[YQ]N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[Y{I|L}][KC]A{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}P{[HG]|PP}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[Y{I|L}]YGGD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}[YQ]GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6547;4.6347;3.8922;3.5066;3.2434;3.0787;2.9303;2.9198;2.4808;2.3161 -;-;-;-;-;-;-;-;-;- 675 NaN NaN 164513.2 NaN 12963 3536 16493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16503 70.82 NaN 1083300 35 0 74134 0.327 + 19996 NYIEFTRIL 9 110 584.8214975884403 1167.6284422436804 2 584.8219604492188 MULTI HCD FTMS 0 0 0 16502 58467.62890625 0.17885719484785806 -1 0.0294952392578125 1 Unmodified _NYIEFTRIL_ ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B 121.34585337138759 0.001129813327125052 2 [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L} 9 0 + 109.35 0 0 9.3652 9.3652 97.472 0 0 0 26.238350322034236 16.478174818886373 16.478174818886373 31.73902187720806 0 2.6861818737241734 1.6989700043360187 0.3494850021680094 1.7390690719683097 + + [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L};[YG]G{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L};[YN]{I|L}T[{M(Oxidation (M))|F}E]R{I|L}{I|L};[Y{I|L}]NE{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}TR{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]E{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}T[VG]{I|L}{I|L};[YN]{I|L}[KQ][YN]{I|L}{I|L} 9.3652;6.647;6.5496;6.4284;6.3432;5.2529;5.0498;5.0378;5.0351;4.94 +;-;-;-;-;-;-;-;-;- + 5415 NaN NaN 261546.1 NaN 12964 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16504 70.824 NaN 386370 35 0 52808 0.262 + 3857 EPISVEVQL 9 58 507.2791513137693 1012.5437496943387 2 507.2792053222656 MULTI HCD FTMS 0 0 0 16502 22542.09765625 0.03697105831389571 20 -0.5473556518554688 2 Unmodified _EPISVEVQL_ ENSG00000138593|ENST00000559471|SECISBP2L;nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 57.72198328787511 0.020768266150574023 2 EVQ{I|L} 4 5 56.855 0 0 5.615 0 0 525.2785511701187 0 525.2785511701187 0 45.63985882645582 0 0 0 1.5 0 1.2302046884880937 0 + EVQ{I|L} 5.615 + + 166 NaN NaN 147348.7 NaN 12965 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16505 70.828 NaN 1385400 35 0 253230 0.262 + 23177 RFLDDLGLKF 10 86 408.56412671113674 1222.6705507336103 3 408.5639953613281 MULTI HCD FTMS 0 0 0 16502 23468.23828125 0.00829267322700989 -7 0.17330169677734375 3 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 64.68765255105646 0.024373786448983335 2 DD{I|L}G{I|L}K{M(Oxidation (M))|F} 7 3 80.711 0 0 6.6012 0 0 416.25300795722814 0 416.25300795722814 0 69.90856225297931 0 0 0 2.613982988912431 0 1.860924374808178 0 + DD{I|L}G{I|L}K{M(Oxidation (M))|F} 6.6012 + + 886 NaN NaN 296303 NaN 12966 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16506 70.831 NaN 222060 35 0 18378 0.261 + 6056 FPDWREDVL 9 71 588.7880405952984 1175.5615282573967 2 588.7882690429688 MULTI HCD FTMS 0 0 0 16502 19292.18359375 0.06169965210923704 17 -0.452056884765625 4 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 22.65808497894818 0.16459551161911185 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 6 35.19 0 0 2.9934 0 0 0 813.3911235545248 813.3911235545248 13.735899786366232 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 2.9934 + + 74 NaN NaN 127138 NaN 12967 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16507 70.835 NaN 343990 35 0 30095 0.261 + -1 VYNFTFCEEA 10 67 640.2693834734379 1278.5242140136756 2 640.785888671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _VYNFTFC(Carbamidomethyl (C))EEA_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|240|3|anti-sense 3.5964929083625545 0.45626689593999237 2 [YV][WH]WDMP 8 -1 26.208 0 0 2.0499 0 0 0 161.02404114524361 161.02404114524361 7.791681396005995 0 0 0 0 0 1.5228787452803376 0 0 [YV][WH]WDMP 2.0499 - 148 NaN NaN 153604.1 NaN 12968 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16508 70.838 NaN 86397 35 0 12909 0.263 + 34907 YSIGEFEF 8 39 496.22376061431424 990.4329682954285 2 496.224365234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YSIGEFEF_ ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT 18.13498045792455 0.4603629008820478 2 {M(Oxidation (M))|F} 1 7 21.99 0 0 2.2202 0 0 825.3540020862473 0 825.3540020862473 0 21.989700043360187 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.2202 + + 3 + NaN NaN 101117.1 NaN 12969 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16509 70.841 NaN 453430 35 0 27892 0.261 -1 DPNLEFVAM 9 79 526.2422446221481 1050.469936311096 2 526.2421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 31.26834338654808 0.10542797264966089 2 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 56.498 0 0 5.3784 0 0 439.206949105821 0 439.206949105821 0 36.84183806885741 0 0 0 2.305462187404089 0 0 0 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.3784 + + 179 + NaN NaN 155131.9 NaN 12970 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16510 70.845 NaN 182370 35 0 40238 0.261 + 33804 YLHPSSLP 8 55 457.24196646353727 NaN 0 456.90765380859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YLHPSSLP_ REV__ENSG00000112941|ENST00000230859|TENT4A;REV__ENST00000514697.1_1_5:6746314-6755055:+|nuORF;REV__nc|ENSG00000112941|Q5XG87-2|TENT4A 5.760428011301431 0.38822285293237185 2 Q 1 -1 8.0989 0 0 0.88759 0 0 274.1509118315683 507.2352388971313 781.3861507286996 0 0 0 0 0 0 0 0 0.3494850021680094 Q 0.88759 - 13 + NaN NaN 122452.7 NaN 12971 3537 16502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16513 70.856 NaN 12604000 35 0 1312500 0.327 + 4719 EYQKVWNLF 9 125 613.8136476744669 1225.6127424157337 2 613.8142700195312 MULTI HCD FTMS 0 0 0 16512 9279968 1 0 0 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 143.21322497773306 1.6000761055044888E-05 2 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 87.372 0 0 7.1288 7.1288 87.408 0 0 0 3.505471209713207 9.276232615147663 3.505471209713207 3.505471209713207 0 2.642159058960253 1.0969100130080565 2.774227503252014 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};[YQ]KEVWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWGG{I|L}{M(Oxidation (M))|F} 7.1288;6.8428;6.3775;6.3775;6.0951;5.8859;5.6298;5.3801;5.276;5.1346 +;-;-;-;-;-;-;-;-;- + 10233 NaN NaN 727465.3 NaN 12972 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16514 70.86 NaN 861340 35 0 182710 0.261 + 12812 KYEELFPAF 9 76 572.2897229524438 1142.5648929716874 2 572.2891845703125 MULTI HCD FTMS 0 0 0 16512 356854.0625 0.058512095026430164 19 -0.5369720458984375 2 Unmodified _KYEELFPAF_ ENSG00000105402|ENST00000263354|NAPA 34.93206674587334 0.08860942999206235 2 [Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 10 3 + 90.699 0 0 7.9382 7.9382 89.087 0 0 0 4.247425010840047 4.247425010840047 4.247425010840047 4.095019080956064 0 2.4604093769761874 1.6989700043360187 0 0 [Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]D{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}[EP]{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}{[SA]|[TG]}[EP]{M(Oxidation (M))|F};[YG]{I|L}SE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}{[DA]|[EG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[YG]{I|L}{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}W{M(Oxidation (M))|F}T[DV] 7.9382;7.5798;7.5664;7.3002;5.9856;5.706;5.6653;5.3493;5.2365;3.88 -;-;-;-;-;-;-;-;-;- 942 NaN NaN 217291.9 NaN 12973 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16515 70.864 NaN 871150 35 0 98836 0.261 + 12057 KITDVIIGF 9 80 503.3037508368617 1004.5929487405234 2 503.3029479980469 MULTI HCD FTMS 0 0 0 16512 311162.4375 0.860809961371089 -1 0.0071868896484375 3 Unmodified _KITDVIIGF_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9 53.40400417844725 0.026808823219830042 2 [K{I|L}]TDV{I|L}{I|L}G{M(Oxidation (M))|F} 9 0 [K{I|L}] + + 68.204 0.22879 0.094861 6.7893 6.7893 65.243 0 0 0 0 49.532219366521076 0 0 0 2.9143943297944483 0 0 0 + + [K{I|L}]TDV{I|L}{I|L}G{M(Oxidation (M))|F} 6.7893 + + 232 + NaN NaN 219190.4 NaN 12974 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16516 70.867 NaN 882650 35 0 91941 0.261 + 24130 RYAVEILTW 9 83 575.8161428575835 1149.6177327819669 2 575.8165283203125 MULTI HCD FTMS 0 0 0 16512 295306.53125 0.09064125388796491 11 -0.31076812744140625 4 Unmodified _RYAVEILTW_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 63.960520009940105 0.0120409805053046 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}TW 10 3 + 98.281 0 0 8.549 8.549 88.912 0 0 0 21.478174818886373 66.67735320183944 21.478174818886373 1.588709367037282 0 1.305462187404089 1.5228787452803376 1.1861818737241734 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{I|L}EA{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RVE{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RD]{I|L}{I|L}TW;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}[VP]{[CT]|[{M(Oxidation (M))|F}G]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AA[RK]T[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}EA[VP]{[CT]|[{M(Oxidation (M))|F}G]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAA[RK]T[VS] 8.549;8.4108;8.3909;8.2528;7.6264;6.1496;5.6365;5.5806;5.4983;5.4225 -;-;-;-;-;-;-;-;-;- 4277 NaN NaN 227166.4 NaN 12975 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16517 70.871 NaN 1059400 35 0 158780 0.261 + 24590 RYLPDTLLL 9 94 552.3264929919228 1102.6384330506455 2 552.3268432617188 MULTI HCD FTMS 0 0 0 16512 198483.125 0.03086969741625105 27 -0.7566452026367188 5 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 20.41453444215458 0.18397929046831515 2 {I|L}{M(Oxidation (M))|F}TDV{M(Oxidation (M))|F} 6 7 32.885 0 0 2.9824 0 0 362.29835844302676 0 362.29835844302676 0 -1.2616496779657709 -1.2616496779657709 0 0 0 0 0.8807196863200843 0 {I|L}{M(Oxidation (M))|F}TDV{M(Oxidation (M))|F} 2.9824 - 3269 + NaN NaN 248519.4 NaN 12976 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16518 70.874 NaN 430670 35 0 30753 0.261 + -1 MKCTACKNIF 10 86 636.7992255710822 1271.5838982089642 2 636.7985229492188 MULTI HCD FTMS 0 0 0 16512 98976.25 0.7116718369628767 1 -0.038970947265625 6 2 Carbamidomethyl (C) _MKC(Carbamidomethyl (C))TAC(Carbamidomethyl (C))KNIF_ REV__ENSG00000133710|ENST00000256084|SPINK5;REV__nc|ENSG00000133710|Q9NQ38-2|SPINK5;REV__nc|ENSG00000133710|Q9NQ38-3|SPINK5 27.628801355627647 0.2527626205058048 2 NW{[WN]|[YH]}D{I|L}{M(Oxidation (M))|F} 7 -1 29.402 0 0 2.3123 0 0 278.162889549025 0 278.162889549025 0 14.723119646384788 0 0 0 0.3807196863200844 0 0.8807196863200843 0.7614393726401688 NW{[WN]|[YH]}D{I|L}{M(Oxidation (M))|F} 2.3123 - 335 NaN NaN 154913.6 NaN 12977 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16519 70.877 NaN 196740 35 0 13590 0.261 + 28010 TFSFQGTENFI 11 65 645.8032325588132 1289.5919121844263 2 645.8038940429688 MULTI HCD FTMS 0 0 0 16512 79496.6171875 1 0 0 7 Unmodified _TFSFQGTENFI_ REV__HACD3|p.R309Q|1|0.09|ENSG00000074696|chr15:65572280-65572280|G/A|missense_variant 19.361941925380144 0.2883811769592959 2 {I|L}N 2 -1 10.969 0 0 0.85059 0 0 183.08816321053456 876.3563326471311 1059.4444958576657 0 0 0 0 0 0 0 0 0 {I|L}N 0.85059 - 65 + NaN NaN 117386.9 NaN 12978 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16520 70.881 NaN 200860 35 0 14359 0.261 -1 0 57 593.1550812387031 592.1478047721031 1 594.1582641601562 MULTI HCD FTMS 0 0 0 16512 49701.09765625 0.6046173762070982 -3 0.06603240966796875 8 NaN NaN 2 GW[{M(Oxidation (M))|F}T] 4 -1 20.362 0 0 3.4386 0 0 82.91573187346872 0 82.91573187346872 0 3.37205316164642 0 0 0 0 0 0.805462187404089 0 GW[{M(Oxidation (M))|F}T] 3.4386 - 23 + NaN NaN 123107.2 NaN 12979 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16521 70.884 NaN 211230 35 0 24104 0.261 + 33248 YFIKKYSDM 9 55 597.7959594726562 NaN 0 597.7959594726562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YFIKKYSDM_ REV__ENSG00000139629|ENST00000356317|GALNT6;REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF 10.073929032068715 0.24642998803896465 2 {I|L} 1 -1 10.797 0 0 0.90458 0 0 310.13349062324374 767.3375948541624 1077.4710854774062 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 0.90458 + + 19 + NaN NaN 115113.8 NaN 12980 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16522 70.887 NaN 203230 35 0 12601 0.261 + 13194 KYLTQVDILL 10 58 603.3616124008942 NaN 0 603.3621215820312 PEAK HCD FTMS 0 0 0 16512 21023.568359375 0.35336454197326805 -4 0.098846435546875 10 Unmodified _KYLTQVDILL_ ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant;nc|ENSG00000123485|Q8NCD3-2|HJURP 10.150570793230772 0.3314968072639206 2 {I|L}{I|L}R 3 8 16.682 0 0 1.3848 0 0 131.09607882652887 688.3090914361936 819.4051702627225 0 0 0 0 0 0.5 0 0 0 {I|L}{I|L}R 1.3848 - 208 + NaN NaN 119721.6 NaN 12981 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16523 70.891 NaN 214190 35 0 26122 0.264 + 32914 YAEHPGDCLIF 11 59 422.19384469782864 1263.559704693686 3 422.19415283203125 MULTI HCD FTMS 0 0 0 16512 43078.92578125 0.7354676481611649 -5 0.13172149658203125 11 Unmodified _YAEHPGDCLIF_ ENSG00000002822|ENST00000265854|MAD1L1;nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1 9.38312468134398 0.3753269387758208 2 {I|L}{M(Oxidation (M))|F} 2 9 23.583 0 0 1.8664 0 0 985.3981924755236 0 985.3981924755236 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.8664 + + 10 NaN NaN 117926.7 NaN 12982 3539 16512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16525 70.896 NaN 475920 35 0 22065 0.327 + 2885 DYSLAVCIHI 10 88 567.2885682930131 NaN 0 567.2789916992188 PEAK HCD FTMS 0 0 0 16524 13356.955078125 0.7446253948236764 1 -0.02947998046875 1 Unmodified _DYSLAVCIHI_ ARRDC4|p.Y296C|1|0.2|ENSG00000140450|chr15:97969887-97969887|A/G|missense_variant 25.399314129420986 0.2368981700431367 2 S 1 9 16.906 0 0 1.4927 0 0 278.0901051251969 764.4172949167511 1042.507400041948 0 0 0 0 0 0.9247425010840047 0 0.3054621874040891 0 + S 1.4927 + + 69 NaN NaN 163371.1 NaN 12983 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16526 70.9 NaN 146630 35 0 27160 0.261 + 23045 RDPHTFLL 8 61 499.77383141736277 997.5331099015256 2 499.77386474609375 MULTI HCD FTMS 0 0 0 16524 37255.9609375 0.724589338450028 1 -0.02947998046875 2 Unmodified _RDPHTFLL_ ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA 10.823927491677226 0.514154816617796 2 H{I|L}{I|L} 3 5 28.188 0 0 2.8257 0 0 616.2778187482437 0 616.2778187482437 0 14.69273760456403 0 0 0 0.5 0 0 0 H{I|L}{I|L} 2.8257 - 59 NaN NaN 106599.7 NaN 12984 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16527 70.904 NaN 292010 35 0 32356 0.261 + 5852 FPDELEEML 9 73 569.7521046507501 1137.4896563683 2 569.7523803710938 MULTI HCD FTMS 0 0 0 16524 54133.57421875 1 0 0 3 Oxidation (M) _FPDELEEM(Oxidation (M))L_ ENSG00000051382|ENST00000674063|PIK3CB 43.85829265575387 0.04763305254408404 2 EE{M(Oxidation (M))|F}{I|L} 4 5 39.698 0 0 3.49 0 0 601.279284361499 0 601.279284361499 0 7.759621790487685 0 0 0 1.110924374808178 0 0.3807196863200844 0 + EE{M(Oxidation (M))|F}{I|L} 3.49 + + 314 NaN NaN 131111.6 NaN 12985 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16528 70.907 NaN 338290 35 0 22899 0.261 + 33385 YGLPIWNLF 9 64 561.8030499349342 NaN 0 561.8026733398438 PEAK HCD FTMS 0 0 0 16524 58874.31640625 1 0 0 4 Unmodified _YGLPIWNLF_ REV__ENSG00000082898|ENST00000401558|XPO1;REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF 23.1484247019978 0.16626532474190622 2 P{I|L}W 3 -1 21.682 0 0 1.9332 0 0 232.08555623558863 490.26714570614007 722.3527019417287 0 0 0 0 0 0.8494850021680094 0 0 0 P{I|L}W 1.9332 + + 80 + NaN NaN 146960.3 NaN 12986 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16529 70.91 NaN 154600 35 0 35203 0.261 -1 MFLCPPVL 8 46 488.75294392211407 975.4913349110282 2 488.7525329589844 MULTI HCD FTMS 0 0 0 16524 29126.23828125 0.11927014954394864 9 -0.24553680419921875 5 Carbamidomethyl (C) _MFLC(Carbamidomethyl (C))PPVL_ ENST00000309993.2_1_3:135870719-135870887:-|nuORF 11.114462752807354 0.5120171699125776 2 V{I|L} 2 -1 25.969 0 0 2.6622 0 0 745.3253022364491 0 745.3253022364491 0 13.20489028679166 0 0 0 0.5 0 0 0 V{I|L} 2.6622 + + 12 NaN NaN 113220.1 NaN 12987 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16530 70.913 NaN 283850 35 0 22619 0.261 + -1 VYNFTFCEEA 10 60 640.2693834734379 1278.5242140136756 2 640.7862548828125 MULTI HCD FTMS 0 0 0 16524 55127.390625 1 0 0 6 Carbamidomethyl (C) _VYNFTFC(Carbamidomethyl (C))EEA_ REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|240|3|anti-sense 3.5964929083625545 0.45626689593999237 2 C{[SA]|[TG]}MD 5 -1 14.693 0 0 1.1492 0 0 0 768.3367403619749 768.3367403619749 7.703037561203843 0 0 0 0 0 0 0 0 C{[SA]|[TG]}MD 1.1492 - 44 + NaN NaN 131422.3 NaN 12988 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16531 70.917 NaN 75150 35 0 11190 0.264 + 9830 HYPLFCAL 8 33 482.2420654296875 NaN 0 482.2420654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HYPLFCAL_ REV__ENSG00000119714|ENST00000650645|GPR68 2.8892196856762586 0.38822285293237185 2 P 1 -1 0.9691 0 0 0.10069 0 0 480.5690866193375 381.8157137506469 862.3848003699844 0 0 0 0 0 0 0 0 0 P 0.10069 + + 2 + NaN NaN 100440.1 NaN 12989 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16532 70.92 NaN 143110 35 0 9255.1 0.261 + 5607 FLSVLGISYL 10 64 556.322904503317 1110.6312560734339 2 556.32421875 MULTI HCD FTMS 0 0 0 16524 36859.60546875 0.34388055334831 7 -0.1932220458984375 8 Unmodified _FLSVLGISYL_ ENST00000389100.8_1_5:63665583-63665673:+|nuORF 14.838274106304384 0.3723198072575719 2 {I|L}E{I|L} 3 8 28.188 0 0 2.538 0 0 737.3945179669937 0 737.3945179669937 0 12.703037561203843 0 0 0 0.5 0 0 0 {I|L}E{I|L} 2.538 - 40 NaN NaN 110237.8 NaN 12990 3540 16524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16534 70.925 NaN 1299600 35 0 70994 0.326 + -1 ELCTSRTNLF 10 101 620.8042753153898 1239.5939976975794 2 620.8030395507812 MULTI HCD FTMS 0 0 0 16533 677222.625 0.6196318702659378 3 -0.08846282958984375 1 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))TSRTNLF_ REV__ENST00000480234.1_1_21:46285323-46293531:-|nuORF 36.506200033944 0.17572556831573002 2 {[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F} 10 -1 + 76.068 0 0 6.1365 6.1365 64.114 0 0 0 14.929155219028942 49.75079529832365 14.929155219028942 0 0 1.4247425010840047 1.6989700043360187 1.9247425010840047 0 {[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}[VS]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}[VS]GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}{[DA]|[EG]}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}T[QA]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WTM{[DS]|[MA]|[CV]|TT}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}[PS]TK{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}[RD]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}T[PS]K{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WT{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}AD{M(Oxidation (M))|F} 6.1365;6.1365;5.3972;5.3972;5.1877;5.087;4.6551;4.435;4.4027;4.3831 -;-;-;-;-;-;-;-;-;- 3770 NaN NaN 287637.7 NaN 12991 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16535 70.929 NaN 1007400 35 0 67858 0.261 + 9924 IDFQNFTNIF 10 110 629.8085765039586 1257.6026000747172 2 629.8087158203125 MULTI HCD FTMS 0 0 0 16533 591925.4375 0.5698973381623454 3 -0.08846282958984375 2 Unmodified _IDFQNFTNIF_ tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1 29.84058131909904 0.23356904650364865 2 {[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}TWN{I|L} 8 6 70.283 0 0 5.5887 0 0 0 180.06890024705572 180.06890024705572 19.546159242101396 0 0 0 0 0.23965182871044374 1.6989700043360187 1.1479400086720375 0.7302046884880937 {[QV]|[N{I|L}]|[RA]|[KV]}W{M(Oxidation (M))|F}TWN{I|L} 5.5887 - 4383 NaN NaN 241290.8 NaN 12992 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16536 70.933 NaN 730640 35 0 114850 0.261 + 1421 AYQLMTDVF 9 68 552.2573876986025 1102.500222464005 2 552.2576904296875 MULTI HCD FTMS 0 0 0 16533 138294.921875 0.5266127960327427 10 -0.26850128173828125 3 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 56.17704186161178 0.022929533404884107 2 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F} 6 5 39.307 0 0 3.5652 0 0 362.15917129388623 0 362.15917129388623 0 29.84280191809303 0 0 0 1.5629529932484498 0 0.8807196863200843 0 {I|L}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F} 3.5652 - 562 + NaN NaN 201554.4 NaN 12993 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16537 70.936 NaN 323410 35 0 30868 0.261 + 1265 AYLVNTYAL 9 67 514.2764490274378 1026.5383451216755 2 514.276611328125 MULTI HCD FTMS 0 0 0 16533 73004.9765625 0.36547112877121607 2 -0.058929443359375 4 Unmodified _AYLVNTYAL_ ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF 114.6490535036381 0.0021834323520089267 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L} 9 0 + 101.1 0 0 9.8485 9.8485 96.585 0 0 0 18.741436528314566 88.70297202896872 18.741436528314566 16.95046257204389 0 2.548455006504028 1.3979400086720375 0.7059771852360797 0.7742275032520141 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VNTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VGGTYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[QS]|[NT]}VYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Y{I|L}][NS]A{I|L};Q{I|L}{M(Oxidation (M))|F}[TA]TYA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YK]{[DA]|[EG]}A{I|L};Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q[RH]A{I|L} 9.8485;8.1973;7.2428;5.0063;3.3264;2.6982;0.69674 +;-;-;-;-;-;- + 536 NaN NaN 138727.5 NaN 12994 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16538 70.94 NaN 272390 35 0 36183 0.261 + 26900 SYKTEFEL 8 61 508.7496688747979 1015.4847848163959 2 508.7503356933594 MULTI HCD FTMS 0 0 0 16533 67153.875 0.6112461898872582 10 -0.26850128173828125 5 Unmodified _SYKTEFEL_ tr|U7SGA9|U7SGA9_FUSNUPhosphoheptoseisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gmhAPE=3SV=1 25.399314129420986 0.40691472774782006 2 {M(Oxidation (M))|F}E{I|L} 3 5 34.693 0 0 3.4164 0 0 608.2798338975117 0 608.2798338975117 0 25.74031267727719 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}E{I|L} 3.4164 + + 107 NaN NaN 131598.4 NaN 12995 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16539 70.943 NaN 236280 35 0 19487 0.261 + 27458 SYVRSLPFF 9 66 558.2989435185425 1114.583334103885 2 558.7994995117188 MULTI HCD FTMS 0 0 0 16533 19965.42578125 0.01928326579142886 36 -0.9857177734375 6 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 25.217 0 0 2.2624 0 0 802.4691506095475 0 802.4691506095475 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2624 + + 32 + NaN NaN 137724.4 NaN 12996 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16540 70.946 NaN 155840 35 0 9153.9 0.261 + 18058 MLVGKEDYNK 10 55 598.801975127957 1195.589397322714 2 599.2904052734375 MULTI HCD FTMS 0 0 0 16533 18732.78515625 0.16176557894931423 12 -0.3242034912109375 7 Unmodified _MLVGKEDYNK_ REV__tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1 10.073929032068715 0.4168838835836452 2 WPQ 3 -1 26.198 0 0 2.1912 0 0 766.36625868965 0 766.36625868965 0 2.0166752027937207 0 0 0 0 0 0 0 WPQ 2.1912 - 14 NaN NaN 109707.6 NaN 12997 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16541 70.95 NaN 75640 35 0 8156.4 0.263 + 23860 RSHALAAW 8 41 456.2458801269531 NaN 0 456.2458801269531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RSHALAAW_ REV__ENSG00000162542|ENST00000294543|TMCO4;REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94248.6 NaN 12998 3541 16533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16543 70.954 NaN 1047000 35 0 76293 0.327 + 1272 AYLYKYFAL 9 103 576.3097086282379 1150.6048643232757 2 576.3087768554688 MULTI HCD FTMS 0 0 0 16542 264650.09375 0.545689036872207 -2 0.05896759033203125 1 Unmodified _AYLYKYFAL_ ENSG00000136156|ENST00000647800|ITM2B;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;nc|ENSG00000136156|Q9Y287-2|ITM2B 64.23631603340823 0.01165516075559909 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}C(Carbamidomethyl (C))K{I|L} 10 6 + 75.112 0 0 6.5281 6.5281 84.874 0 0 0 6.387145270309219 0.7918124604762511 0.7918124604762511 0.0401595313346661 0 0.5 1.6989700043360187 0.6747425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}C(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE[KG]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}C(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YKY{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YK{M(Oxidation (M))|F}YA{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}C(Carbamidomethyl (C)){I|L}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}C(Carbamidomethyl (C)){I|L}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[KG]EA{I|L}TW 6.5281;6.5246;6.4837;6.4608;6.4593;6.4149;6.2495;6.1134;6.0691;5.973 -;-;-;+;-;-;-;-;-;- + 7268 NaN NaN 256566.8 NaN 12999 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16544 70.959 NaN 343330 35 0 27060 0.261 + 29432 TYTDRVFFL 9 57 581.3003855833391 1160.5862182334781 2 581.3011474609375 MULTI HCD FTMS 0 0 0 16542 139985.34375 0.45448495781369846 -5 0.1344757080078125 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 49.55428908609986 0.03219431099695407 2 [YT]T[RD]V{M(Oxidation (M))|F} 7 2 42.44 0 0 3.6567 0 0 0 275.13950525455317 275.13950525455317 24.480844613864647 0 0 0 0 1.8494850021680094 1.6989700043360187 0 0 + [YT]T[RD]V{M(Oxidation (M))|F} 3.6567 + + 108 + NaN NaN 146463.2 NaN 13000 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16545 70.962 NaN 274860 35 0 28803 0.261 + 19023 NAVYTFETL 9 62 529.2636305242078 1056.5127081152154 2 529.2639770507812 MULTI HCD FTMS 0 0 0 16542 89397.9609375 0.4677477940155759 3 -0.0851593017578125 3 Unmodified _NAVYTFETL_ ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2 79.59630418116434 0.005983006570063981 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}T{M(Oxidation (M))|F}ET{I|L} 9 2 + 73.452 0 0 6.9523 6.9523 86.451 0 0 0 13.722412206649466 46.00501891384965 13.722412206649466 1.9897000433601875 0 1.6861818737241734 1.6989700043360187 0.3494850021680094 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}T{M(Oxidation (M))|F}ET{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[NS]{M(Oxidation (M))|F}ET{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[HS]T{[NV]|[RG]}C{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[HS][NS]{I|L}C{I|L} 6.9523;6.764;2.3416;2.1533 -;-;-;- 137 NaN NaN 123029.3 NaN 13001 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16546 70.966 NaN 96385 35 0 12862 0.261 + 30747 VPLDQTVTL 9 30 493.28173024969936 984.5489075661987 2 493.2817687988281 MULTI HCD FTMS 0 0 0 16542 52005.95703125 0.23609438849194392 -2 0.05896759033203125 4 Unmodified _VPLDQTVTL_ REV__ENSG00000180304|ENST00000326005|OAZ2;REV__ENST00000560837.5_1_15:64982571-64983740:-|nuORF 5.731851221503515 0.3075653528928475 2 T{I|L} 2 -1 25.969 0 0 2.6377 0 0 752.4064879235568 0 752.4064879235568 0 23.494850021680094 0 0 0 0.5 0 0 0 T{I|L} 2.6377 + + 6 NaN NaN 107524.9 NaN 13002 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16547 70.969 NaN 194180 35 0 19077 0.261 -1 VPMEDINL 8 50 473.73125633104536 945.4479597288907 2 473.73095703125 MULTI HCD FTMS 0 0 0 16542 33489.375 0.04381961330661233 -30 0.7712478637695312 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 21.74664581756881 0.4337896562907935 2 {I|L}N{I|L} 3 -1 28.232 0 0 2.9861 0 0 587.2258992690372 0 587.2258992690372 0 16.665090889956673 0 0 0 0.805462187404089 0 0 0 {I|L}N{I|L} 2.9861 + + 34 NaN NaN 120700.5 NaN 13003 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16548 70.972 NaN 110530 35 0 6700.8 0.261 + 6057 FPDWREDVL 9 51 588.7880405952984 1175.5615282573967 2 588.84912109375 MULTI HCD FTMS 0 0 0 16542 26540.228515625 0.08488012040504403 22 -0.6063308715820312 6 Unmodified _FPDWREDVL_ ENSG00000075539|ENST00000358350|FRYL 7.101721422024254 0.29718071671418667 2 DPE 3 7 21.682 0 0 1.8444 0 0 816.4125233380875 0 816.4125233380875 0 0.7133375178436552 0 0 0 0 0 0 0 DPE 1.8444 - 9 NaN NaN 110816.1 NaN 13004 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16549 70.976 NaN 177800 35 0 28303 0.262 -1 TPEIMAPIL 9 44 500.77246546759045 999.5303780019809 2 500.77276611328125 MULTI HCD FTMS 0 0 0 16542 59157.52734375 0.3635639706089939 -6 0.163970947265625 7 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}AP{I|L}{I|L} 5 -1 37.263 0 0 3.728 0 0 440.22597787698464 0 440.22597787698464 0 9.815534464597704 0 0 0 1.5044321917401078 0 0 0 {M(Oxidation (M))|F}AP{I|L}{I|L} 3.728 + + 50 NaN NaN 112147.2 NaN 13005 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16550 70.979 NaN 198930 35 0 14881 0.261 + 10303 ILDPHVVLL 9 68 509.81825474002494 1017.6219565468499 2 509.81884765625 MULTI HCD FTMS 0 0 0 16542 9072.1103515625 0.03001953972646425 10 -0.258575439453125 8 Unmodified _ILDPHVVLL_ ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF 23.1484247019978 0.1603590852062899 2 {I|L}{I|L} 2 7 15.401 0 0 1.5134 0 0 773.4435902326187 0 773.4435902326187 0 1.4215905896025305 0 0 0 0.3807196863200844 0 0 0 + {I|L}{I|L} 1.5134 + + 87 NaN NaN 116320.4 NaN 13006 3542 16542 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16552 70.984 NaN 3754700 35 0 792480 0.327 + 23178 RFLDDLGLKF 10 104 408.56412671113674 1222.6705507336103 3 408.5643615722656 MULTI HCD FTMS 0 0 0 16551 1848885.5 0.6533171813713213 -1 0.02944183349609375 1 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 62.89396527753397 0.030897030654610403 2 [R{M(Oxidation (M))|F}]{I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F} 10 0 + 91.164 0 0 7.4561 7.4561 88.809 0 0 0 4.884381005764311 63.57332496431269 4.884381005764311 5.642714304385635 0 2.75 0 1.9049471895720984 0 + + [R{M(Oxidation (M))|F}]{I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RDD{I|L}G{I|L}K{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}DDG{I|L}{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RDDG{I|L}{I|L}K{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}DGD{I|L}{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}G{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RDGD{I|L}{I|L}K{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}D{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}G{I|L}{I|L}K{M(Oxidation (M))|F};DD{I|L}{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L}K{M(Oxidation (M))|F} 7.4561;6.9946;6.3747;5.9132;5.2642;5.195;4.8027;4.4114;4.1136;3.6957 +;-;-;-;-;-;-;-;-;- + 1814 NaN NaN 650922.2 NaN 13007 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16553 70.988 NaN 942440 35 0 178120 0.261 + 31498 VYFRALVNF 9 97 564.8140376848103 1127.6135224364205 2 565.3052978515625 MULTI HCD FTMS 0 0 0 16551 15329.12890625 0.5465830558928143 3 -0.07859039306640625 2 Unmodified _VYFRALVNF_ ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF 32.30548876998284 0.10066689432505688 2 [{I|L}P]WSKAW{M(Oxidation (M))|F} 8 8 42.389 0 0 3.7591 0 0 0 109.07898278262113 109.07898278262113 14.170175336041453 0 0 0 0 0 1.6989700043360187 0.805462187404089 0 [{I|L}P]WSKAW{M(Oxidation (M))|F} 3.7591 - 2085 NaN NaN 243250 NaN 13008 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16554 70.992 NaN 486670 35 0 28845 0.261 + 19997 NYIEFTRIL 9 86 584.8214975884403 1167.6284422436804 2 584.822265625 MULTI HCD FTMS 0 0 0 16551 146140.0625 0.447054243905666 5 -0.12764739990234375 3 Unmodified _NYIEFTRIL_ ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B 57.107585691075435 0.021627766313179933 2 [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L} 9 0 + 85.358 0 0 7.3104 7.3104 94.204 0 0 0 11.8716953353495 11.8716953353495 11.8716953353495 25.62977812912628 0 2.5669015600442577 1.6989700043360187 0 0.5866968715561641 + + [YN]{I|L}E{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}TR{I|L}{I|L};[Y{I|L}]NE{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[DG]{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S[TP]{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]E{M(Oxidation (M))|F}T[VG]{I|L}{I|L};[Y{I|L}]GGE{M(Oxidation (M))|F}TR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}ES{M(Oxidation (M))|F}GR{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RE{M(Oxidation (M))|F}G{[TV]|[{I|L}S]}{I|L}{I|L} 7.3104;5.1154;4.5816;4.1715;4.1715;4.0667;4.0519;3.793;3.746;3.6909 +;-;-;-;-;-;-;-;-;- + 2008 NaN NaN 162774.7 NaN 13009 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16555 70.995 NaN 1103100 35 0 187850 0.261 + 1234 AYLPKILQI 9 89 529.8340713198602 1057.6535897065203 2 529.8341674804688 MULTI HCD FTMS 0 0 0 16551 237881.5625 0.2493850887687485 -4 0.12738037109375 4 Unmodified _AYLPKILQI_ ENSG00000120800|ENST00000261637|UTP20 81.61307344734483 0.005330412723537057 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[K{I|L}]{I|L}Q{I|L} 9 0 + 54.737 0 0 5.1754 5.1754 88.812 0 0 0 18.62302362186034 8.723637474483468 8.723637474483468 12.580444800391945 0 2.1989700043360187 1.6989700043360187 0 0.9436726795685343 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}P[K{I|L}]{I|L}Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Q{I|L}]{I|L}[KP]{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L};[KP]{I|L}{I|L}Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L};[KP]{I|L}{I|L}[AG]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[Y{I|L}]A[Q{I|L}]{I|L}[KP]{I|L} 5.1754;3.9859;2.3415;1.8736;1.4708;1.003;0.9613 +;-;-;-;-;-;- + 503 + NaN NaN 258028.8 NaN 13010 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16556 70.999 NaN 435110 35 0 45211 0.261 + 4505 EYISIALRI 9 70 539.318890606339 NaN 0 539.3192749023438 PEAK HCD FTMS 0 0 0 16551 181265.984375 0.7608175601670004 -1 0.02944183349609375 5 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 99.75527289724121 3.223093066262894E-05 2 C(Carbamidomethyl (C)){I|L}S{I|L}A{I|L} 6 4 39.474 0 0 3.6665 0 0 132.0835687109216 284.1726473443969 416.25621605531853 0 0 0 0 0 1.6989700043360187 0 0 0 C(Carbamidomethyl (C)){I|L}S{I|L}A{I|L} 3.6665 - 280 + NaN NaN 147177.1 NaN 13011 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16557 71.002 NaN 613920 35 0 55313 0.261 + -1 VYTVFRCMI 9 81 602.7992807042517 NaN 0 602.8108520507812 PEAK HCD FTMS 0 0 0 16551 32176.05859375 1 0 0 6 Carbamidomethyl (C),Oxidation (M) _VYTVFRC(Carbamidomethyl (C))M(Oxidation (M))I_ REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|2|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|2 19.256988751693697 0.19238547928067054 2 SRW{M(Oxidation (M))|F} 4 -1 25.79 0 0 2.1427 0 0 165.0556240880515 459.224943192972 624.2805672810234 0 0 0 0 0 0.3054621874040891 0 0.3807196863200844 0 SRW{M(Oxidation (M))|F} 2.1427 - 655 + NaN NaN 177739.4 NaN 13012 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16558 71.005 NaN 264170 35 0 23148 0.263 + 15782 LPHALLAVL 9 56 473.80774663059134 945.6009403279827 2 473.8076171875 MULTI HCD FTMS 0 0 0 16551 104914.9453125 0.7818733712321462 -2 0.058929443359375 7 Unmodified _LPHALLAVL_ ABCC10|p.A144Lfs*4|1|0.19|ENSG00000124574|chr6:43432410-43432410|G/-|frameshift_variant;ENSG00000124574|ENST00000372530|ABCC10 14.581692164780916 0.23437375358055648 2 {I|L}AV{I|L} 4 5 30.918 0 0 3.2696 0 0 531.3167591779312 0 531.3167591779312 0 14.931605754696946 0 0 0 0.5 0 0 0 + {I|L}AV{I|L} 3.2696 + + 126 NaN NaN 136147.8 NaN 13013 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16559 71.009 NaN 133690 35 0 8882.4 0.261 -1 0 60 559.062035550992 NaN 0 559.08349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.31313 0 0 803.9934120670247 162.05660425357658 966.0500163206012 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.31313 - 3 + NaN NaN 99478.6 NaN 13014 3543 16551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16561 71.013 NaN 5478200 35 0 562350 0.327 + 4720 EYQKVWNLF 9 109 613.8136476744669 1225.6127424157337 2 613.8141479492188 MULTI HCD FTMS 0 0 0 16560 4495828.5 0.4844659485894779 5 -0.127593994140625 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 132.13456570155267 0.00047552052208015726 2 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 90.777 0 0 7.4066 7.4066 91.019 0 0 0 9.340700995863429 14.973024840566467 9.340700995863429 9.208187539523749 0 2.610924374808178 1.154901959985743 2.610924374808178 0.28872548999643577 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[YQ]KEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};[KA][YG]EVWN{I|L}{M(Oxidation (M))|F} 7.4066;6.6553;6.6553;6.6445;6.019;5.9076;5.8968;5.4092;5.3775;5.2978 +;-;-;-;-;-;-;-;-;- + 6926 NaN NaN 400832.8 NaN 13015 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16562 71.018 NaN 577020 35 0 86816 0.262 + 12058 KITDVIIGF 9 80 503.3037508368617 1004.5929487405234 2 503.3034362792969 MULTI HCD FTMS 0 0 0 16560 316897.40625 0.8766753668095327 4 -0.098114013671875 2 Unmodified _KITDVIIGF_ ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9 45.739877483867886 0.03899552410870734 2 [K{I|L}]TDV{I|L}{I|L}G{M(Oxidation (M))|F} 9 0 + 63.145 0 0 6.2856 6.2856 89.882 0 0 0 4.137342758552691 7.499999999999993 4.137342758552691 9.635601970822762 0 2.7104093769761874 0 0 0 + + [K{I|L}]TDV{I|L}{I|L}G{M(Oxidation (M))|F};[K{I|L}]ESV{I|L}{I|L}G{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RR{I|L}{I|L}G{M(Oxidation (M))|F};{I|L}{I|L}[SG]SV{I|L}{I|L}G{M(Oxidation (M))|F};{I|L}{I|L}{[MG]|[TS]}AA{I|L}{I|L}G{M(Oxidation (M))|F};[K{I|L}]TDV{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L};[K{I|L}]ESV{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}RR{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L} 6.2856;5.3265;5.2454;4.1961;3.4578;0.68751;0.47493;0.39387 +;-;-;-;-;-;-;- + 109 + NaN NaN 175726.4 NaN 13016 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16563 71.022 NaN 633210 35 0 102880 0.261 + 16910 LYGESLYIW 9 89 572.2897229524438 1142.5648929716874 2 572.28955078125 MULTI HCD FTMS 0 0 0 16560 284536.5 0.04665444078134278 24 -0.6546478271484375 3 Unmodified _LYGESLYIW_ REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF 42.09456458481378 0.05572955244001856 2 {I|L}YG{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F} 10 -1 + 104.93 0 0 9.184 9.184 91.81 0 0 0 71.24433935984612 16.53212513775344 16.53212513775344 6.906140654642812 0 1.6549471895720984 2 0.7059771852360797 0 {I|L}YG{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};{I|L}YGSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{I|L}YD{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};[Y{I|L}]GSE{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{I|L}YG{M(Oxidation (M))|F}{I|L}{[SA]|[TG]}[EP]{M(Oxidation (M))|F};[Y{I|L}]D{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F};{I|L}YG{M(Oxidation (M))|F}[VP]{[ET]|[MV]}A{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}{I|L}ESPA{M(Oxidation (M))|F};[Y{I|L}]G{M(Oxidation (M))|F}[RN]RA{M(Oxidation (M))|F};[YT][VG]E{I|L}{M(Oxidation (M))|F}PA{M(Oxidation (M))|F} 9.184;8.5795;7.8283;7.3826;7.2588;6.839;6.8239;6.7782;5.6494;5.5874 -;-;-;-;-;-;-;-;-;- 2036 + NaN NaN 177555.3 NaN 13017 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16564 71.025 NaN 121670 35 0 12625 0.261 + 4118 ETDLVPVQI 9 40 507.2791513137693 1012.5437496943387 2 507.2792663574219 MULTI HCD FTMS 0 0 0 16560 181762.734375 0.2981071572994491 27 -0.7265090942382812 4 Unmodified _ETDLVPVQI_ REV__ENSG00000118873|ENST00000358951|RAB3GAP2 20.453626601364224 0.18364154288633264 2 VQ{I|L} 3 -1 30.005 0 0 2.9633 0 0 654.3237171857437 0 654.3237171857437 0 24.5205343810445 0 0 0 0.3807196863200844 0 0 0 VQ{I|L} 2.9633 + + 17 NaN NaN 109946.9 NaN 13018 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16565 71.028 NaN 598400 35 0 94602 0.261 + 24591 RYLPDTLLL 9 78 552.3264929919228 1102.6384330506455 2 552.3265991210938 MULTI HCD FTMS 0 0 0 16560 180629.71875 0.02809299159409662 32 -0.8677902221679688 5 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 22.736283301280096 0.1639198954644489 2 VTTPD{I|L}{I|L}{I|L} 8 4 38.005 0 0 3.4467 0 0 232.14174086738439 0 232.14174086738439 0 7.242348067271664 0 0 0 1.0074908058443608 0 0.6861818737241735 0 VTTPD{I|L}{I|L}{I|L} 3.4467 - 548 NaN NaN 173835.8 NaN 13019 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16566 71.031 NaN 365770 35 0 29267 0.261 -1 DPNLEFVAM 9 50 526.2422446221481 1050.469936311096 2 526.2427368164062 MULTI HCD FTMS 0 0 0 16560 160793.9375 1 0 0 6 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF 31.26834338654808 0.10542797264966089 2 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 -1 59.706 0 0 5.6838 0 0 439.20652968574376 0 439.20652968574376 0 59.7062251842808 0 0 0 2.3252574989159953 0 0 0 E{M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.6838 + + 59 NaN NaN 140788.3 NaN 13020 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16567 71.035 NaN 329360 35 0 56167 0.261 -1 TPEIMAPIL 9 66 500.77246546759045 999.5303780019809 2 500.7730712890625 MULTI HCD FTMS 0 0 0 16560 155786.421875 0.9574154405530048 -4 0.11794281005859375 7 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 28.486842064014134 0.11819662193267319 2 AP{I|L}{I|L} 4 -1 42.423 0 0 4.2443 0 0 587.2624487094563 0 587.2624487094563 0 11.453650195120844 0 0 0 1.3494850021680094 0 0 0 AP{I|L}{I|L} 4.2443 + + 59 NaN NaN 137555.7 NaN 13021 3544 16560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16569 71.04 NaN 3515200 35 0 707250 0.327 + 23185 RFLDDLGLKF 10 98 612.3430421541256 1222.671531375051 2 612.343505859375 MULTI HCD FTMS 0 0 0 16568 3177470 0.6815313032267032 1 -0.0228729248046875 1 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 100.0664306616029 0.00022978569098609146 2 {M(Oxidation (M))|F}R{I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F} 10 2 + 94.716 0 0 7.7467 7.7467 89.531 0 0 0 12.698405410982616 6.136014808293538 6.136014808293538 6.136014808293538 0 3.024227503252014 1.0969100130080565 1.1747425010840047 0.4247425010840047 {M(Oxidation (M))|F}R{I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RDD{I|L}G{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DRD{I|L}G{I|L}K{M(Oxidation (M))|F};R{M(Oxidation (M))|F}{I|L}DD{I|L}G{I|L}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]D{I|L}G{I|L}K{M(Oxidation (M))|F};{M(Oxidation (M))|F}R{I|L}DD{I|L}GK{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}AAD{I|L}G{I|L}K{M(Oxidation (M))|F};R{M(Oxidation (M))|F}{I|L}DD{I|L}GK{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}G{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}G{I|L}K{M(Oxidation (M))|F} 7.7467;7.2448;6.8892;6.7081;6.5083;6.4619;6.0922;5.4234;5.2034;5.0902 -;-;-;+;-;-;-;-;-;- + 2472 + NaN NaN 388421.7 NaN 13022 3545 16568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16570 71.044 NaN 517760 35 0 68615 0.264 -1 0 59 431.30505410079877 860.5955552683976 2 431.3051452636719 MULTI HCD FTMS 0 0 0 16568 98718.6015625 0.8455668468238899 -2 0.05571746826171875 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.697 0 0 695.5168331998414 0 695.5168331998414 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.697 - 16 + NaN NaN 173992.8 NaN 13023 3545 16568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16571 71.048 NaN 112700 35 0 27281 0.261 + 8281 GVEVPDVEL 9 41 478.75038540199915 955.4862178707983 2 478.7503662109375 MULTI HCD FTMS 0 0 0 16568 113110.6171875 0.946911906177875 -2 0.05571746826171875 3 Unmodified _GVEVPDVEL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 19.256988751693697 0.19398022840297344 2 E{I|L} 2 7 24.464 0 0 2.5604 0 0 695.3500233380875 0 695.3500233380875 0 8.037275116073346 0 0 0 0.3494850021680094 0 0 0 + E{I|L} 2.5604 + + 13 NaN NaN 100740.6 NaN 13024 3545 16568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16572 71.051 NaN 201250 35 0 13096 0.261 + 22970 QYVYWLHML 9 61 634.8102300217877 1267.6059071103753 2 634.8107299804688 MULTI HCD FTMS 0 0 0 16568 76176.1953125 0.15739539820682086 24 -0.6480026245117188 4 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 40.44857923139169 0.06328554730241728 2 [YQ]VYW{I|L}HEM 9 2 [YQ] + + 44.173 2.8432 0.97663 3.4848 3.4848 60.472 0 0 0 0 29.48059641722287 0 0 0 0.9436726795685342 0 0 0 [YQ]VYW{I|L}HEM 3.4848 - 143 + NaN NaN 116674.4 NaN 13025 3545 16568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16573 71.054 NaN 457140 35 0 41602 0.262 + 6448 FPIEAGDMF 9 68 521.731240149677 1041.4479273661539 2 521.7319946289062 MULTI HCD FTMS 0 0 0 16568 100975.8515625 0.4760600689273534 -8 0.219635009765625 5 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 61.357469665136826 0.01568246967499496 2 EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 54.959 0 0 5.2771 0 0 357.2046070783219 0 357.2046070783219 0 49.474119043930216 0 0 0 2.079689690656103 0 0.3807196863200844 0 + EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2771 + + 132 NaN NaN 152196.6 NaN 13026 3545 16568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16574 71.058 NaN 186010 35 0 42277 0.261 + -1 PRDWAKATGLC 11 48 637.8198496355167 NaN 0 637.8064575195312 PEAK HCD FTMS 0 0 0 16568 23590.498046875 1 0 0 6 Carbamidomethyl (C) _PRDWAKATGLC(Carbamidomethyl (C))_ REV__ENST00000476805.2_1_2:64977750-64977942:-|nuORF 2.9952420565917617 0.33362350433860827 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117701.6 NaN 13027 3545 16568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16576 71.063 NaN 518140 35 0 27249 0.327 + 29716 VDGQYVWFNI 10 83 620.8042753153898 1239.5939976975794 2 620.8031005859375 MULTI HCD FTMS 0 0 0 16575 251479.859375 0.23009410767802727 8 -0.2095489501953125 1 Unmodified _VDGQYVWFNI_ ENSG00000141385|ENST00000269143|AFG3L2 27.628801355627647 0.2527626205058048 2 NWVKQ[C(Carbamidomethyl (C))Q] 7 9 53.153 0 0 4.2879 0 0 278.16307265449376 0 278.16307265449376 0 20.030382041820758 0 0 0 2.1237125054200234 0 0 0.9476212463643423 NWVKQ[C(Carbamidomethyl (C))Q] 4.2879 - 1738 NaN NaN 163535.7 NaN 13028 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16577 71.067 NaN 454800 35 0 29170 0.261 + 22469 QQYAVFENIF 10 84 629.8085765039586 1257.6026000747172 2 629.8088989257812 MULTI HCD FTMS 0 0 0 16575 204259.15625 0.19665779178844903 8 -0.2095489501953125 2 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 27.628801355627647 0.2527626205058048 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DA]|[EG]}T{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F} 11 -1 + 62.211 0 0 4.9468 4.9468 88.054 0 0 0 3.290365625129219 -3.9100021410963492 -3.9100021410963492 11.047353505200128 0 1 1.6989700043360187 1.5 0 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DA]|[EG]}T{[CT]|[{M(Oxidation (M))|F}G]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[DS]|[MA]|[CV]|TT}{[WS]|[C(Carbamidomethyl (C)){I|L}]}N{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[DS]|[MA]|[CV]|TT}{[WS]|[C(Carbamidomethyl (C)){I|L}]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DA]|[EG]}T[YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}Y[RD][YR]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[TV]|[{I|L}S]}PN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YG]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C))K]PQQPHH;{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[HT]QQPHH 4.9468;4.0683;3.0338;1.4237;1.0275;0.58135;0.42558;0.42558 -;-;-;-;-;-;-;- 847 NaN NaN 161570.3 NaN 13029 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16578 71.071 NaN 424270 35 0 23900 0.261 + 1182 AYLESFYKF 9 92 584.2898198412643 1166.5650867493284 2 584.289794921875 MULTI HCD FTMS 0 0 0 16575 53405.515625 0.4455083234494862 1 -0.02622222900390625 3 Unmodified _AYLESFYKF_ ENSG00000159720|ENST00000290949|ATP6V0D1 60.07390631473393 0.0174780869009295 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F} 9 0 + 52.162 0 0 4.4715 4.4715 88.37 0 0 0 15.412027720371668 15.577505373956768 15.412027720371668 15.088643834802149 0 1.579689690656103 1.3979400086720375 0.3054621874040891 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R[QP]W{[TV]|[{I|L}S]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R[QP]W{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[YN]{I|L}E[{I|L}V][NS]C{I|L};[YN]{I|L}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}QE{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R[W{M(Oxidation (M))|F}]N[TP]{I|L};[YN]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VN[TP]{I|L};{I|L}{M(Oxidation (M))|F}QY[QP]{I|L}G{[DS]|[MA]|[CV]|TT};[YN]{I|L}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[SA]|[TG]}V{I|L};{I|L}[HD]W[QP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.4715;3.178;2.92;2.8648;2.8117;2.6204;2.5145;2.3209;2.1974;2.194 +;-;-;-;-;-;-;-;-;- + 2000 NaN NaN 154094.8 NaN 13030 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16579 71.074 NaN 155530 35 0 12357 0.264 + -1 YTEMTGNLGKF 11 61 426.20105782641474 1275.5813440794443 3 426.20135498046875 MULTI HCD FTMS 0 0 0 16575 16914.212890625 0.19302421589847427 1 -0.02622222900390625 4 Oxidation (M) _YTEM(Oxidation (M))TGNLGKF_ REV__tr|U7SSR8|U7SSR8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01356PE=4SV=1 6.623454094837244 0.3898724468670146 2 K{M(Oxidation (M))|F} 2 -1 24.464 0 0 1.9179 0 0 982.4078344132319 0 982.4078344132319 0 17.47425010840047 0 0 0 0.5 0 0 0 K{M(Oxidation (M))|F} 1.9179 + + 22 + NaN NaN 111449.8 NaN 13031 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16580 71.077 NaN 420010 35 0 26267 0.261 + 10177 IFTARLYYF 9 87 597.3211802636915 1192.627807594183 2 597.3221435546875 MULTI HCD FTMS 0 0 0 16575 96440.3359375 0.5625091307074384 -3 0.07859039306640625 5 Unmodified _IFTARLYYF_ ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C 49.93300154707207 0.03166451819912738 2 YY{M(Oxidation (M))|F} 3 6 31.867 0 0 2.672 0 0 701.4217396466812 0 701.4217396466812 0 8.02403573299836 0 0 0 0.805462187404089 0 0 0 + YY{M(Oxidation (M))|F} 2.672 + + 302 NaN NaN 154690.4 NaN 13032 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16581 71.081 NaN 200190 35 0 13270 0.261 -1 FPMTDLDML 9 61 557.744671133043 NaN 0 557.7451171875 PEAK HCD FTMS 0 0 0 16575 15222.4375 0.2616657814532228 1 -0.02622222900390625 6 2 Oxidation (M) _FPM(Oxidation (M))TDLDM(Oxidation (M))L_ ENSG00000100284|ENST00000449058|TOM1;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;nc|ENSG00000100284|O60784-2|TOM1;nc|ENSG00000100284|O60784-4|TOM1 10.823927491677226 0.2427956001690155 2 {M(Oxidation (M))|F} 1 -1 7.7642 0 0 0.6973 0 0 654.325113895189 309.09150110416255 963.4166149993516 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.6973 + + 13 + NaN NaN 116876.9 NaN 13033 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16582 71.084 NaN 250030 35 0 44120 0.263 + 29944 VFFKGFKWGF 10 63 421.56187861997296 1261.6638064601188 3 421.5622863769531 MULTI HCD FTMS 0 0 0 16575 57913.375 0.9205518210514434 -1 0.0228729248046875 7 Unmodified _VFFKGFKWGF_ ENSG00000119013|ENST00000237889|NDUFB3 12.872603262515298 0.3907060291096084 2 V{M(Oxidation (M))|F} 2 8 25.217 0 0 1.9987 0 0 0 1012.5039452816715 1012.5039452816715 9.731975075880328 0 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 1.9987 + + 35 + NaN NaN 123574.1 NaN 13034 3546 16575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16584 71.089 NaN 925870 35 0 53485 0.327 + 1273 AYLYKYFAL 9 106 576.3097086282379 1150.6048643232757 2 576.3090209960938 MULTI HCD FTMS 0 0 0 16583 187553.09375 0.3867206908587776 3 -0.07857513427734375 1 Unmodified _AYLYKYFAL_ ENSG00000136156|ENST00000647800|ITM2B;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;nc|ENSG00000136156|Q9Y287-2|ITM2B 64.23631603340823 0.01165516075559909 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}C(Carbamidomethyl (C))K 10 7 + 72.566 0 0 6.3068 6.3068 85.324 0 0 0 11.446763154795875 4.737350347438124 4.737350347438124 1.9897000433601875 0 0.9247425010840047 1.6989700043360187 0.6643943297944485 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}{I|L}C(Carbamidomethyl (C))K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}C(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}C(Carbamidomethyl (C))K{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}YKY{M(Oxidation (M))|F}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}C(Carbamidomethyl (C)){I|L}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE[KG]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}{I|L}[CG]K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}AE{I|L}C(Carbamidomethyl (C)){I|L}K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AAE{I|L}[KG]C{I|L} 6.3068;6.1339;5.8951;5.7221;5.6481;5.6305;5.6019;5.5103;5.4576;5.4057 -;-;-;-;+;-;-;-;-;- + 5078 NaN NaN 226196 NaN 13035 3547 16583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16585 71.093 NaN 483150 35 0 78375 0.261 + 14898 LKSDLLIGF 9 74 503.3037508368617 1004.5929487405234 2 503.3054504394531 MULTI HCD FTMS 0 0 0 16583 139261.109375 0.38525649543283563 7 -0.18332672119140625 2 Unmodified _LKSDLLIGF_ REV__ENSG00000153292|ENST00000371253|ADGRF1 22.736283301280096 0.1639198954644489 2 {I|L}{I|L}G{M(Oxidation (M))|F} 4 -1 45.79 0 0 4.558 0 0 556.3248624688592 0 556.3248624688592 0 36.05774396488272 0 0 0 1.9247425010840047 0 0 0 {I|L}{I|L}G{M(Oxidation (M))|F} 4.558 + + 153 + NaN NaN 158374.4 NaN 13036 3547 16583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16586 71.097 NaN 388210 35 0 81585 0.261 -1 DPDECGSDYI 10 75 585.717698760345 1169.42084458749 2 585.71923828125 MULTI HCD FTMS 0 0 0 16583 131905.21875 0.4149613564830035 -5 0.13425445556640625 3 Carbamidomethyl (C) _DPDEC(Carbamidomethyl (C))GSDYI_ ENSG00000082397|ENST00000341928|EPB41L3;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3 1.6526216038709556 0.46655611578153744 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 37.691 0 0 3.223 0 0 649.1651478498062 0 649.1651478498062 0 10.243500300354142 0 0 0 0.9247425010840047 0 0 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.223 - 124 NaN NaN 142302.3 NaN 13037 3547 16583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16587 71.1 NaN 212230 35 0 26942 0.261 + 12486 KRAERWEWKRW 11 48 544.293322842954 1629.8581391290618 3 544.2947998046875 MULTI HCD FTMS 0 0 0 16583 62484.29296875 1 0 0 4 Unmodified _KRAERWEWKRW_ REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF 0.0732635311334299 0.4185993575453356 2 AVY{M(Oxidation (M))|F} 4 -1 25.433 0 0 1.5604 0 0 1131.6105633007398 0 1131.6105633007398 0 10.695990759876109 0 0 0 0 0 0 0 AVY{M(Oxidation (M))|F} 1.5604 - 48 + NaN NaN 117263.4 NaN 13038 3547 16583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16588 71.103 NaN 152060 35 0 4986.8 0.261 + 178 AEQQLSELQQ 10 64 587.2897287391937 1172.5649045451873 2 588.2926635742188 MULTI HCD FTMS 0 0 0 16583 42541.97265625 1 0 0 5 Unmodified _AEQQLSELQQ_ REV__ENSG00000130038|ENST00000440314|CRACR2A;REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A 7.101721422024254 0.4377131641736035 2 T[RD]{I|L}TR[{M(Oxidation (M))|F}T] 8 -1 11.833 0 0 1.0091 0 0 164.02427166362276 0 164.02427166362276 0 2.8706527319221564 0 0 0 0 0 0.5 0 T[RD]{I|L}TR[{M(Oxidation (M))|F}T] 1.0091 - 202 + NaN NaN 113137.5 NaN 13039 3547 16583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16589 71.107 NaN 110910 35 0 10911 0.261 + 34005 YLYGYPVF 8 34 511.2546005039294 NaN 0 511.2550964355469 PEAK HCD FTMS 0 0 0 16583 50090.28515625 1 0 0 6 Unmodified _YLYGYPVF_ REV__ENSG00000196371|ENST00000358752|FUT4;REV__nc|ENSG00000196371|P22083-2|FUT4 6.354104778181461 0.38822285293237185 2 V 1 -1 10.485 0 0 1.0274 0 0 165.07952381580327 753.3208644829086 918.400388298712 0 0 0 0 0 0.5 0 0 0 V 1.0274 + + 1 + NaN NaN 108960.2 NaN 13040 3547 16583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16591 71.112 NaN 1275300 35 0 115830 0.327 + 6764 FPQKWPDLL 9 116 572.3134703925194 1142.6123878518388 2 572.3133544921875 MULTI HCD FTMS 0 0 0 16590 385296.4375 0.397481198806849 -7 0.18657684326171875 1 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 79.59630418116434 0.005983006570063981 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE 9 4 + 64.553 0 0 5.6496 5.6496 87.972 0 0 0 10.853481135844874 10.853481135844874 10.853481135844874 9.208187539523749 0 1.1989700043360187 1.3010299956639813 1.2786596949921218 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;{M(Oxidation (M))|F}PQKW[DP]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW[DP]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW[VP]{I|L}E;{M(Oxidation (M))|F}P[AG]KW[DP]{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKAAKQPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW[VP]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW[DP]{I|L}{I|L} 5.6496;4.8437;4.6997;4.3403;4.1896;3.8938;3.8803;3.7309;3.6861;3.5344 -;-;+;+;-;-;-;-;-;- + 3639 NaN NaN 288150.1 NaN 13041 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16592 71.116 NaN 567300 35 0 34200 0.261 + 29433 TYTDRVFFL 9 82 581.3003855833391 1160.5862182334781 2 581.301025390625 MULTI HCD FTMS 0 0 0 16590 295985.25 0.9609637713214316 1 -0.02947998046875 2 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 57.72198328787511 0.020768266150574023 2 [{I|L}P]WKSA{[MS]|[{M(Oxidation (M))|F}A]}E 9 8 55.763 0 0 4.8047 0 0 0 128.0701769012982 128.0701769012982 23.283701620906058 0 0 0 0 1.2971062485323515 1.5228787452803376 1.2614393726401687 0.28872548999643577 [{I|L}P]WKSA{[MS]|[{M(Oxidation (M))|F}A]}E 4.8047 - 1006 NaN NaN 169216.3 NaN 13042 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16593 71.12 NaN 822680 35 0 124160 0.261 + 24542 RYLETILEI 9 93 575.3294467560155 1148.644340578831 2 575.330078125 MULTI HCD FTMS 0 0 0 16590 304240.5 0.5004836377454585 -3 0.071929931640625 3 Unmodified _RYLETILEI_ ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP 36.506200033944 0.08138327636155518 2 T{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}E{I|L} 8 3 47.114 0 0 4.1017 0 0 204.08958632636876 0 204.08958632636876 0 7.448500216800937 0 0 0 1.2059771852360797 0 0.805462187404089 0 T{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}E{I|L} 4.1017 - 1463 NaN NaN 226120 NaN 13043 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16594 71.123 NaN 228870 35 0 28364 0.263 -1 DDLMPINL 8 42 473.73125633104536 945.4479597288907 2 473.7308654785156 MULTI HCD FTMS 0 0 0 16590 154308.96875 0.20190760025730928 -24 0.601959228515625 4 Oxidation (M) _DDLM(Oxidation (M))PINL_ ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B 15.847184025352803 0.47719562709667024 2 {I|L}N{I|L} 3 -1 30.445 0 0 3.2202 0 0 587.2263760366108 0 587.2263760366108 0 18.20993063545643 0 0 0 0.4247425010840047 0 0 0 {I|L}N{I|L} 3.2202 + + 31 NaN NaN 123562 NaN 13044 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16595 71.126 NaN 154720 35 0 20228 0.261 + 9859 IAAEGPTITL 10 35 493.28173024969936 984.5489075661987 2 493.28192138671875 MULTI HCD FTMS 0 0 0 16590 153408.71875 0.6964382488115768 4 -0.1014862060546875 5 Unmodified _IAAEGPTITL_ REV__tr|U7T223|U7T223_FUSNUEthanolamineutilizationproteinEutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00815PE=4SV=1 10.073929032068715 0.4168838835836452 2 T{I|L} 2 -1 25.969 0 0 2.6377 0 0 752.4068865137699 0 752.4068865137699 0 17.01667520279372 0 0 0 0.5 0 0 0 T{I|L} 2.6377 + + 11 NaN NaN 104630.3 NaN 13045 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16596 71.13 NaN 268450 35 0 15148 0.261 + -1 IMAIWFLCV 9 67 576.8001720060826 1151.585791078965 2 577.7906494140625 MULTI HCD FTMS 0 0 0 16590 34864.48828125 0.5923912516830299 14 -0.3868408203125 6 Carbamidomethyl (C) _IMAIWFLC(Carbamidomethyl (C))V_ REV__ENST00000509876.5_1_6:64356628-64388746:+|nuORF 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}PQ 3 -1 28.94 0 0 2.5131 0 0 761.3971424787125 0 761.3971424787125 0 1.0159677630583985 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}PQ 2.5131 - 138 NaN NaN 129490.3 NaN 13046 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16597 71.133 NaN 227470 35 0 18053 0.261 + 27459 SYVRSLPFF 9 61 558.2989435185425 1114.583334103885 2 558.2984619140625 MULTI HCD FTMS 0 0 0 16590 35546.53125 0.02079560684306582 42 -1.1593475341796875 7 Unmodified _SYVRSLPFF_ ENSG00000170043|ENST00000303731|TRAPPC1 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 25.238 0 0 2.2644 0 0 655.432407445485 0 655.432407445485 0 20.634255398170982 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2644 - 54 + NaN NaN 123295.7 NaN 13047 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16598 71.136 NaN 81091 35 0 5505.2 0.261 + 1266 AYLVNTYAL 9 40 514.2764490274378 1026.5383451216755 2 514.2757568359375 MULTI HCD FTMS 0 0 0 16590 38038.8984375 0.19042700653790476 9 -0.25579071044921875 8 Unmodified _AYLVNTYAL_ ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF 13.90604991867851 0.24021115267848145 2 S{M(Oxidation (M))|F} 2 9 13.188 0 0 1.2847 0 0 774.4270455384709 0 774.4270455384709 0 6.059094263259358 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.2847 - 29 + NaN NaN 109668.1 NaN 13048 3548 16590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16600 71.141 NaN 2126300 35 0 435070 0.327 + 16235 LPWSKAWEL 9 118 565.3056388833058 1128.5967248334116 2 565.3057861328125 MULTI HCD FTMS 0 0 0 16599 1303203.75 0.7303590984950048 2 -0.0524444580078125 1 Unmodified _LPWSKAWEL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 136.39213081522345 0.00021731600835925866 2 {I|L}PWSKAWE{I|L} 9 0 + 106.54 0 0 9.44 9.44 92.705 0 0 0 18.635445935544865 8.634993639681312 8.634993639681312 8.634993639681312 0 2.9291746928241125 1.6989700043360187 1.7856668758921828 0.3807196863200844 + + {I|L}PWSKAWE{I|L};[{I|L}P]WSKAWE{I|L};[WP]{I|L}SKAWE{I|L};[{I|L}P]WSKAEW{I|L};[{I|L}P]WSKEAW{I|L};[WP]{I|L}SKAEW{I|L};[WP]S{I|L}KAWE{I|L};[WP]{I|L}SKEAW{I|L};[WP]S{I|L}KAEW{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{I|L}KAWE{I|L} 9.44;8.6748;7.8091;7.7887;6.928;6.923;6.6765;6.0622;5.7904;5.0151 +;+;-;-;-;-;-;-;-;- + 6342 + NaN NaN 408048 NaN 13049 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16601 71.146 NaN 1349900 35 0 280390 0.261 + 1235 AYLPKILQI 9 81 529.8340713198602 1057.6535897065203 2 529.8341674804688 MULTI HCD FTMS 0 0 0 16599 792774.125 0.8311112616669983 2 -0.0524444580078125 2 Unmodified _AYLPKILQI_ ENSG00000120800|ENST00000261637|UTP20 100.37149154755038 0.004254194004462789 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}Q{I|L} 9 0 + 78.655 0 0 7.4368 7.4368 93.003 0 0 0 4.6040937697618745 4.6040937697618745 4.6040937697618745 13.812281309285623 0 2.579689690656103 1.6989700043360187 0 1.079689690656103 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}Q{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PK{I|L}{I|L}[AG]{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L};[KP]{I|L}{I|L}Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L};[KP]{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L};[KP]{I|L}{I|L}[AG]{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 7.4368;6.1308;3.0114;2.4875;2.1408;1.6169 +;-;-;-;-;- + 291 + NaN NaN 293591.8 NaN 13050 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16602 71.149 NaN 673920 35 0 139080 0.263 + 23179 RFLDDLGLKF 10 67 408.56412671113674 1222.6705507336103 3 408.564208984375 MULTI HCD FTMS 0 0 0 16599 660798.75 0.23349805967091658 5 -0.131011962890625 3 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 32.61649475675321 0.20947998662014555 2 HD{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 7 4 59.257 0 0 4.8465 0 0 394.2085133283219 0 394.2085133283219 0 47.574703959221836 0 0 0 2 0 1.2302046884880937 0 HD{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 4.8465 - 104 NaN NaN 186546.5 NaN 13051 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16603 71.152 NaN 1261400 35 0 327740 0.261 + 6404 FPHLLQPVL 9 85 532.318560627175 1062.6225683211499 2 532.318603515625 MULTI HCD FTMS 0 0 0 16599 703093 0.5875004504375119 -4 0.101409912109375 4 Unmodified _FPHLLQPVL_ ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 60.38955033654506 0.017036522530421875 2 {I|L}{I|L}QPV{I|L} 6 3 59.162 0 0 5.5675 0 0 381.1801930158219 0 381.1801930158219 0 31.370090806403468 0 0 0 1.7302046884880937 0 0 0.6989700043360187 + {I|L}{I|L}QPV{I|L} 5.5675 + + 315 NaN NaN 280854.8 NaN 13052 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16604 71.156 NaN 422620 35 0 41063 0.261 + 7830 FYQRFPLSF 9 76 602.8112951626049 1203.6080373920097 2 602.8117065429688 MULTI HCD FTMS 0 0 0 16599 321505.28125 0.6606280255277681 2 -0.0524444580078125 5 Unmodified _FYQRFPLSF_ ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF 118.0683919894846 0.0016252157255221692 2 {M(Oxidation (M))|F}YQR{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F} 9 0 + 93.184 0 0 7.7421 7.7421 91.629 0 0 0 75.27433463803845 29.49401151747452 29.49401151747452 9.208187539523749 0 2.298455006504028 0 1.9604093769761874 0.7742275032520141 + + {M(Oxidation (M))|F}YQR{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[AG]R{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}G{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QR{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}G{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}YQ[KA]KWS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]QRP{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][AG]R{M(Oxidation (M))|F}P{I|L}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y[AG][KA]KWS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][AG]RP{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 7.7421;6.977;5.2046;4.4575;4.1528;4.1262;3.7919;3.6924;3.3612;3.0269 +;-;-;+;-;-;-;-;-;- + 800 + NaN NaN 153277.1 NaN 13053 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16605 71.159 NaN 248850 35 0 20513 0.261 + 4506 EYISIALRI 9 61 539.318890606339 NaN 0 539.3187255859375 PEAK HCD FTMS 0 0 0 16599 85980.2265625 0.3608799876128837 5 -0.131011962890625 6 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 36.506200033944 0.08948014603198573 2 C(Carbamidomethyl (C)){I|L}S{I|L}AR 6 4 29.953 0 0 2.7822 0 0 132.0861321874841 241.15581690006096 373.2419490875451 0 0 0 0 0 0.6694451763165201 0 0 0.5 C(Carbamidomethyl (C)){I|L}S{I|L}AR 2.7822 - 134 + NaN NaN 127477.2 NaN 13054 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16606 71.162 NaN 118920 35 0 19931 0.262 -1 LYFICCFSHL 10 52 434.8717123660798 1301.5933076984395 3 434.87152099609375 MULTI HCD FTMS 0 0 0 16599 31040.62890625 0.5770508033970354 1 -0.0262603759765625 7 Carbamidomethyl (C) _LYFIC(Carbamidomethyl (C))CFSHL_ ENST00000220597.4_1_8:81888598-81888739:-|nuORF 8.97624648632007 0.42715123575657504 2 {I|L}Y 2 -1 38.201 0 0 2.9349 0 0 0 1022.4236278409267 1022.4236278409267 30.102131414518922 0 0 0 0 0.3252574989159953 1.6989700043360187 0 0 {I|L}Y 2.9349 + + 4 + NaN NaN 110967.6 NaN 13055 3549 16599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16608 71.167 NaN 1954000 35 0 179310 0.327 + 4721 EYQKVWNLF 9 109 613.8136476744669 1225.6127424157337 2 613.8142700195312 MULTI HCD FTMS 0 0 0 16607 1026576.25 0.11062282219076618 11 -0.3048553466796875 1 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 132.13456570155267 0.00047552052208015726 2 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 82.99 0 0 6.7713 6.7713 89.842 0 0 0 9.269403919028818 11.519658726648899 9.269403919028818 9.208187539523749 0 2.610924374808178 1.154901959985743 2.774227503252014 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q[SG]VWN{I|L}{M(Oxidation (M))|F};[YQ]KEVWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWGG{I|L}{M(Oxidation (M))|F} 6.7713;6.02;6.02;6.015;5.442;5.2723;5.2673;4.9062;4.7374;4.6906 +;-;-;-;-;-;-;-;-;- + 6056 NaN NaN 390055.1 NaN 13056 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16609 71.172 NaN 2213400 35 0 613380 0.261 -1 0 96 535.8029997198473 1069.5914465064945 2 535.8032836914062 MULTI HCD FTMS 0 0 0 16607 1256442.75 0.46013776562813863 -3 0.07857513427734375 2 NaN NaN 2 VSVWDV{I|L} 7 -1 64.721 0 0 6.051 0 0 253.1536579816422 0 253.1536579816422 0 22.294620822441175 0 0 0 1.7689301784845295 0 1.035666875892183 0 VSVWDV{I|L} 6.051 - 4085 NaN NaN 425891.7 NaN 13057 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16610 71.175 NaN 1289100 35 0 167070 0.261 + 16023 LPSAFYIKL 9 90 526.3130796283597 1050.6116063235193 2 526.3135375976562 MULTI HCD FTMS 0 0 0 16607 337450.75 0.27586778445532023 -5 0.1276702880859375 3 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 110.6747026088012 0.0028322563155251486 2 {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L} 9 0 + 91.679 0 0 8.7263 8.7263 95.379 0 0 0 60.95610894364736 11.879617791072832 11.879617791072832 15.938265792396251 0 2.4049471895720984 1.6989700043360187 0.805462187404089 0.2742275032520141 + + {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}YK{I|L}{I|L};[TA]Y{M(Oxidation (M))|F}[VP]{I|L}K{I|L};[TA][VP]{M(Oxidation (M))|F}Y{I|L}K{I|L};[TA]Y{M(Oxidation (M))|F}[VP]K{I|L}{I|L};[TA][VP]{M(Oxidation (M))|F}YK{I|L}{I|L} 8.7263;7.2092;5.9544;3.89;2.9314;2.6352;1.6766 +;+;-;-;-;-;- + 436 + NaN NaN 290928.6 NaN 13058 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16611 71.179 NaN 445700 35 0 63205 0.261 + 32575 WIWSFWSWSLL 11 80 504.2546200201292 1509.7420306605877 3 504.25555419921875 MULTI HCD FTMS 0 0 0 16607 129829.6796875 0.6173291328609523 -2 0.0557403564453125 4 Unmodified _WIWSFWSWSLL_ REV__ENST00000342245.8_1_11:6415895-6416042:+|nuORF 4.715918219556657 0.3982382512160552 2 VDYY{I|L}G{M(Oxidation (M))|F} 7 -1 30.093 0 0 1.9932 0 0 634.3404065004502 0 634.3404065004502 0 6.79206760434802 0 0 0 0 0 0.3807196863200844 0 VDYY{I|L}G{M(Oxidation (M))|F} 1.9932 - 91 + NaN NaN 163893.7 NaN 13059 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16612 71.182 NaN 460610 35 0 35160 0.261 -1 MHMTSYPVSW 10 96 635.7649617347255 1269.5153705362509 2 635.7650756835938 MULTI HCD FTMS 0 0 0 16607 129739.3359375 0.5695080922201571 -2 0.0557403564453125 5 2 Oxidation (M) _M(Oxidation (M))HM(Oxidation (M))TSYPVSW_ ENSG00000124812|ENST00000335847|CRISP1;nc|ENSG00000124812|P54107-2|CRISP1 6.723162845929126 0.4397169348982109 2 VAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 -1 30.187 0 0 2.3779 0 0 292.03018915320166 0 292.03018915320166 0 12.740181612806936 0 0 0 0 0 1 0 VAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.3779 - 439 + NaN NaN 155290.1 NaN 13060 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16613 71.185 NaN 666430 35 0 82352 0.261 + 24592 RYLPDTLLL 9 85 552.3264929919228 1102.6384330506455 2 552.3268432617188 MULTI HCD FTMS 0 0 0 16607 100203.375 0.015584437550230706 38 -1.054595947265625 6 Unmodified _RYLPDTLLL_ ENSG00000093010|ENST00000361682|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT 15.248480904072842 0.22861284681709862 2 {I|L}{I|L}{I|L} 3 6 27.703 0 0 2.5124 0 0 745.3779164044937 0 745.3779164044937 0 8.194925493843868 0 0 0 0.5 0 0 0 + {I|L}{I|L}{I|L} 2.5124 + + 577 NaN NaN 196347.7 NaN 13061 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16614 71.189 NaN 267220 35 0 25678 0.261 + 29817 VEPLSDLQI 9 70 507.2791513137693 1012.5437496943387 2 507.27923583984375 MULTI HCD FTMS 0 0 0 16607 53739.65234375 0.08813784106814931 33 -0.9102325439453125 7 Unmodified _VEPLSDLQI_ REV__ENSG00000176390|ENST00000324238|CRLF3;REV__nc|ENSG00000176390|Q8IUI8-2|CRLF3 22.736283301280096 0.1639198954644489 2 EVQ{I|L} 4 -1 31.252 0 0 3.0865 0 0 525.2801380841812 0 525.2801380841812 0 24.262181955810824 0 0 0 0.6307196863200843 0 0.3252574989159953 0 EVQ{I|L} 3.0865 - 226 NaN NaN 152086.5 NaN 13062 3550 16607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16616 71.194 NaN 507380 35 0 36861 0.327 + 29434 TYTDRVFFL 9 84 581.3003855833391 1160.5862182334781 2 581.3007202148438 MULTI HCD FTMS 0 0 0 16615 239337.625 0.7770481358078302 4 -0.11141204833984375 1 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 53.832793166522166 0.026208976789938845 2 {I|L}VVMDTSH 8 9 37.49 0 0 3.2302 0 0 0 275.13971887760005 275.13971887760005 20.494718957209837 0 0 0 0 0.8494850021680094 0 0.8807196863200843 0 {I|L}VVMDTSH 3.2302 - 357 + NaN NaN 166562.7 NaN 13063 3551 16615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16617 71.198 NaN 562760 35 0 52363 0.261 + 6449 FPIEAGDMF 9 75 521.731240149677 1041.4479273661539 2 521.7312622070312 MULTI HCD FTMS 0 0 0 16615 129897.7578125 0.6124150931220567 -2 0.0524444580078125 2 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 74.42276476219924 0.007657080072768255 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 51.436 0 0 4.9389 4.9389 84.992 0 0 0 4.762036441594191 46.48711844322193 4.762036441594191 6.720449851406514 0 2.1307196863200843 0 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9389;4.2936 +;- + 103 NaN NaN 170402.9 NaN 13064 3551 16615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16618 71.202 NaN 296960 35 0 22786 0.261 + 3041 EAFLTFLCVM 10 65 587.2897287391937 1172.5649045451873 2 588.3089599609375 MULTI HCD FTMS 0 0 0 16615 20917.703125 0.49169565534772874 4 -0.11141204833984375 3 Unmodified _EAFLTFLCVM_ ENSG00000176463|ENST00000318445|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;ENST00000555210.1_1_15:92669436-92694191:+|nuORF;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1 14.838274106304384 0.3723198072575719 2 {M(Oxidation (M))|F}AEQQ{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}T] 9 7 + 40.379 0 0 3.4437 3.4437 80.565 0 0 0 0.26802492411967194 4.929376786541965 0.26802492411967194 0.26802492411967194 0 0.4247425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}AEQQ{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}T];EA{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}T];EA{[MG]|[TS]}KS[YG]{M(Oxidation (M))|F}[{I|L}A];EA{[MG]|[TS]}KS{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}T];{M(Oxidation (M))|F}A{M(Oxidation (M))|F}[HT][YG]{M(Oxidation (M))|F}[{I|L}A];{M(Oxidation (M))|F}A{I|L}{[QG]|[NA]}S{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}T];E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KS[YG]{M(Oxidation (M))|F}[{I|L}A];{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{[QS]|[NT]}{M(Oxidation (M))|F}[{I|L}A];E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KS{M(Oxidation (M))|F}R[{M(Oxidation (M))|F}T];EA{[MG]|[TS]}KS[Q{I|L}][Y{M(Oxidation (M))|F}] 3.4437;3.4208;3.0233;2.952;2.8922;2.8683;2.2928;2.2286;2.2252;1.7988 -;-;-;-;-;-;-;-;-;- 368 + NaN NaN 128325.1 NaN 13065 3551 16615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16619 71.205 NaN 210350 35 0 23570 0.261 -1 TPEIMAPIL 9 61 500.77246546759045 999.5303780019809 2 500.7729797363281 MULTI HCD FTMS 0 0 0 16615 101162.7890625 0.6217153914450808 3 -0.0785675048828125 4 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}AP{I|L}{I|L} 5 -1 33.35 0 0 3.3365 0 0 440.2262440412125 0 440.2262440412125 0 4.638290892413401 0 0 0 1.5356668758921828 0 0 0 {M(Oxidation (M))|F}AP{I|L}{I|L} 3.3365 + + 103 NaN NaN 120925.1 NaN 13066 3551 16615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16620 71.208 NaN 52832 35 0 4171.6 0.261 + 2468 DRFFMWIFF 9 42 436.8791289891901 NaN 0 436.87921142578125 PEAK HCD FTMS 0 0 0 16615 6950.06982421875 0.3874407219146679 4 -0.11141204833984375 5 Unmodified _DRFFMWIFF_ ENSG00000174343|ENST00000310169|CHRNA9 2.498486711656943 0.28313952434011336 2 D 1 8 1.9897 0 0 0.22824 0 0 523.5892078301397 230.10524927310783 753.6944571032475 0 0 0 0 0 0 0 0 0 + D 0.22824 + + 1 + NaN NaN 88342.5 NaN 13067 3551 16615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16622 71.213 NaN 830240 35 0 119670 0.327 + 1598 AYVLNIVRF 9 81 547.8215331276353 1093.6285133220706 2 547.8219604492188 MULTI HCD FTMS 0 0 0 16621 567113.5 0.26434347332809416 -4 0.1014862060546875 1 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 107.99703571036002 0.003269392969029945 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F} 9 0 + 104.35 0 0 9.5418 9.5418 89.397 0 0 0 24.13734275855269 93.38222205381598 24.13734275855269 0.45757490560674796 0 3.4247425010840047 1.6989700043360187 0 1.2302046884880937 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}AA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[R{I|L}]{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N[RV]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}AA{I|L}{M(Oxidation (M))|F} 9.5418;9.4999;8.4933;7.9633;7.8542;7.537;7.3032;6.9852;6.7268;6.2797 +;-;-;-;-;-;-;-;-;- + 782 NaN NaN 210937.3 NaN 13068 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16623 71.218 NaN 372990 35 0 15289 0.261 + 3876 EPNKYLCNFI 10 98 620.8042753153898 1239.5939976975794 2 620.803466796875 MULTI HCD FTMS 0 0 0 16621 144810.890625 0.13249622750398352 14 -0.4001312255859375 2 Unmodified _EPNKYLCNFI_ REV__ENSG00000152463|ENST00000378228|OLAH;REV__nc|ENSG00000152463|Q9NV23-2|OLAH 32.78568957990786 0.20801173326193015 2 NW[HM]VY{I|L} 7 -1 47.656 0 0 3.8445 0 0 278.1626454084 0 278.1626454084 0 25.296021252165435 0 0 0 1.5356668758921828 0 0 1.110924374808178 NW[HM]VY{I|L} 3.8445 - 2924 NaN NaN 150692.2 NaN 13069 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16624 71.221 NaN 550680 35 0 46470 0.261 + 10178 IFTARLYYF 9 94 597.3211802636915 1192.627807594183 2 597.3212890625 MULTI HCD FTMS 0 0 0 16621 166213.171875 0.9694742963579516 3 -0.09185028076171875 3 Unmodified _IFTARLYYF_ ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C 75.76082778847304 0.0072241045649327805 2 {I|L}{M(Oxidation (M))|F}TA[R{I|L}]YY{M(Oxidation (M))|F} 9 0 + 44.218 0 0 3.7076 3.7076 88.69 0 0 0 24.182481745344226 10.27823791370924 10.27823791370924 26.03650964661929 0 2.416386562212267 0 0.5774509799928715 0 + + {I|L}{M(Oxidation (M))|F}TA[R{I|L}]YY{M(Oxidation (M))|F};[Y{I|L}]K{[CA]|SS}[RP]TE{I|L};{I|L}{M(Oxidation (M))|F}TA[R{I|L}]{[ES]|[DT]|[{I|L}C]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YG][{I|L}V][R{I|L}]YY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ES]|[DT]|[{I|L}C]}[R{I|L}]ATE{I|L};[Y{I|L}]K[EC]Q[KP][KG] 3.7076;1.5245;1.3217;1.0909;1.0235;0.28787 +;-;-;-;-;- + 418 + NaN NaN 183467.6 NaN 13070 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16625 71.224 NaN 351400 35 0 65669 0.262 + 33198 YFDEPVEL 8 55 506.2370403308058 1010.4595277284117 2 506.2370910644531 MULTI HCD FTMS 0 0 0 16621 174870.5 1 0 0 4 Unmodified _YFDEPVEL_ ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 42.09456458481378 0.20402248593209013 2 E[VP]E{I|L} 5 3 35.515 0 0 3.5148 0 0 425.15852553535314 0 425.15852553535314 0 35.51538440272459 0 0 0 1.25 0 0.3807196863200844 0 + E[VP]E{I|L} 3.5148 + + 41 NaN NaN 140720.6 NaN 13071 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16626 71.228 NaN 242360 35 0 14247 0.261 + 4360 EWEHKRNLF 9 62 629.8227384665203 1257.6309239998404 2 629.8087768554688 MULTI HCD FTMS 0 0 0 16621 16655.037109375 0.7858372923722062 3 -0.09185028076171875 5 Unmodified _EWEHKRNLF_ REV__ENSG00000115306|ENST00000356805|SPTBN1 4.5288652416199255 0.31668488241058723 2 {I|L}NWD[HM]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 -1 26.643 0 0 2.1185 0 0 183.11968151936122 0 183.11968151936122 0 21.12395659563255 0 0 0 0 0 0 0.4247425010840047 {I|L}NWD[HM]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.1185 - 134 + NaN NaN 145736.2 NaN 13072 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16627 71.231 NaN 251590 35 0 64494 0.261 -1 MPDQFDQAVVL 11 51 639.8052086476713 1277.5958643621425 2 639.80517578125 MULTI HCD FTMS 0 0 0 16621 115352.9296875 0.700959569757872 -3 0.0720062255859375 6 Oxidation (M) _M(Oxidation (M))PDQFDQAVVL_ ENSG00000145555|ENST00000513610|MYO10;ENST00000511972.1_1_5:16710938-16713441:-|nuORF;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10 4.189502756095605 0.4005469306127019 2 VV{I|L} 3 -1 31.198 0 0 2.4419 0 0 948.3644276349625 0 948.3644276349625 0 31.197887582883936 0 0 0 0.5 0 0 0 VV{I|L} 2.4419 + + 4 NaN NaN 139149.5 NaN 13073 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16628 71.234 NaN 282610 35 0 56099 0.262 + 11598 IYTLCVYVL 9 60 543.8011517017167 1085.5877504702332 2 543.80029296875 MULTI HCD FTMS 0 0 0 16621 121122.9140625 0.9218514668595706 -1 0.019561767578125 7 Unmodified _IYTLCVYVL_ ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4 11.640296217721598 0.25978676193971967 2 DV{I|L} 3 7 29.693 0 0 2.7352 0 0 740.3937855451187 0 740.3937855451187 0 11.76091259055681 0 0 0 0.5 0 0 0 DV{I|L} 2.7352 - 47 NaN NaN 135331.9 NaN 13074 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16629 71.238 NaN 204180 35 0 13230 0.261 + 17990 MLDWADGKLF 10 60 598.2921811755767 1194.5698094179534 2 599.2902221679688 MULTI HCD FTMS 0 0 0 16621 76911.0703125 0.7783446680643946 -4 0.1014862060546875 8 Unmodified _MLDWADGKLF_ ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12 13.90604991867851 0.3810395177745597 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 3 7 25.942 0 0 2.1717 0 0 0 761.3472856671214 761.3472856671214 2.8946809624041236 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 2.1717 - 177 NaN NaN 126181.1 NaN 13075 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16630 71.241 NaN 405900 35 0 26473 0.261 + 7877 FYTLIPHDF 9 98 576.7895269461108 1151.5645009590214 2 576.8001098632812 MULTI HCD FTMS 0 0 0 16621 35704.4609375 0.8645263220917273 2 -0.0590057373046875 9 Unmodified _FYTLIPHDF_ ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF 32.30548876998284 0.10066689432505688 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YYE 9 6 + 39.649 0 0 3.443 3.443 81.218 0 0 0 8.173327074556912 6.910976904085807 6.910976904085807 1.7609125905568135 0 0.3054621874040891 2 0.5501648626366046 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YYE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YYE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{I|L}P]{[{M(Oxidation (M))|F}H]|[RQ]}YE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}[WR]R{[C(Carbamidomethyl (C))G]|[NC]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A[WR]R{[C(Carbamidomethyl (C))G]|[NC]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RH]Y{I|L}{[C(Carbamidomethyl (C))G]|[NC]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]PE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[HK][WR]YE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[WR]{I|L}A{[ES]|[DT]|[{I|L}C]} 3.443;3.2901;2.9102;2.8429;2.69;2.5975;2.3781;2.2895;2.2252;2.048 -;-;-;-;-;-;-;-;-;- 1194 NaN NaN 160212.4 NaN 13076 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16631 71.244 NaN 145660 35 0 22550 0.261 + -1 HCHTLLVL 8 47 496.770180673341 991.525808413482 2 496.7705078125 MULTI HCD FTMS 0 0 0 16621 31457.388671875 0.26040923397482807 -3 0.0720062255859375 10 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HTLLVL_ REV__ENSG00000130766|ENST00000253063|SESN2;REV__SESN2|p.A197V|1|0.19|ENSG00000130766|chr1:28272633-28272633|C/T|missense_variant 19.438996006549623 0.45076845602799126 2 H{I|L}V{I|L} 4 -1 33.443 0 0 3.3729 0 0 511.20506484199376 0 511.20506484199376 0 16.453650195120844 0 0 0 0.5 0 0 0 H{I|L}V{I|L} 3.3729 - 11 NaN NaN 107123.6 NaN 13077 3552 16621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16633 71.249 NaN 631510 35 0 134900 0.327 -1 MMCQEMVPL 9 78 585.7369409504055 NaN 0 585.71875 PEAK HCD FTMS 0 0 0 16632 32448.998046875 1 0 0 1 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))QEMVPL_ ENSG00000282815|ENST00000695840|TEX13C 4.3292370932331545 0.2742679634796037 2 {I|L}{M(Oxidation (M))|F}E 3 -1 16.198 0 0 1.3851 0 0 131.1329788889455 646.1435640924436 777.2765429813892 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}E 1.3851 - 166 + NaN NaN 183021.1 NaN 13078 3553 16632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16634 71.254 NaN 602730 35 0 62411 0.261 + 12692 KWNLTNDVL 9 79 551.7981662125362 1101.5817794918723 2 551.7982177734375 MULTI HCD FTMS 0 0 0 16632 167548.140625 0.9598586441362819 1 -0.02286529541015625 2 Unmodified _KWNLTNDVL_ ENSG00000196511|ENST00000360057|TPK1;ENST00000378098.8_1_7:144150640-144304024:-|nuORF 24.020572477871973 0.15282392193088168 2 DV{I|L} 3 6 40.119 0 0 3.642 0 0 756.39067275215 0 756.39067275215 0 21.535984316004217 0 0 0 0.8252574989159953 0 0.805462187404089 0 + DV{I|L} 3.642 + + 512 NaN NaN 179400.7 NaN 13079 3553 16632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16635 71.257 NaN 392960 35 0 82424 0.261 + 871 AYAENIALL 9 48 489.2688059296335 976.523058926067 2 489.2687072753906 MULTI HCD FTMS 0 0 0 16632 254249.40625 0.14710370285619068 -5 0.13762664794921875 3 Unmodified _AYAENIALL_ ENSG00000196455|ENST00000356763|PIK3R4 72.96794272382148 0.008127836904478181 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L} 9 0 + 79.664 0 0 8.1579 8.1579 95.341 0 0 0 4.762036441594191 59.54033167468005 4.762036441594191 21.95046257204389 0 2.610924374808178 0 0 1.274227503252014 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEGG{I|L}A{I|L}{I|L} 8.1579;5.9101 +;- + 143 NaN NaN 144229 NaN 13080 3553 16632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16636 71.261 NaN 233050 35 0 32380 0.261 + 21400 PVLQVLCPA 9 72 470.2686876428084 938.5228223524168 2 470.2683410644531 MULTI HCD FTMS 0 0 0 16632 58458.75390625 1 0 0 4 Unmodified _PVLQVLCPA_ ENST00000561173.5_1_1:197885422-197885647:+|nuORF 24.67388899826682 0.14717941214954053 2 PV{[CT]|[{M(Oxidation (M))|F}G]}RVS 7 7 44.958 0 0 4.7903 0 0 0 193.09848962955314 193.09848962955314 25.260847058321687 0 0 0 0 0 1.6989700043360187 0.6549471895720984 0.3494850021680094 PV{[CT]|[{M(Oxidation (M))|F}G]}RVS 4.7903 - 832 + NaN NaN 115840.9 NaN 13081 3553 16632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16637 71.264 NaN 207190 35 0 11865 0.261 + 33733 YLDWILFF 8 63 558.7919330671663 1115.5693132011324 2 560.7994995117188 MULTI HCD FTMS 0 0 0 16632 8008.27197265625 0.21447782719435368 -3 0.08188629150390625 5 Unmodified _YLDWILFF_ ENST00000394974.2_1_1:58694357-58694534:-|nuORF 6.354104778181461 0.5325651638111438 2 ED{I|L}AA 5 6 19.208 0 0 1.7218 0 0 598.309479545486 0 598.309479545486 0 0.6246936830414995 0 0 0 0 0 0 0 ED{I|L}AA 1.7218 - 33 NaN NaN 137973.5 NaN 13082 3553 16632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16638 71.267 NaN 60177 35 0 6381.5 0.261 + 26561 SVPTLPDDI 9 39 478.75038540199915 955.4862178707983 2 478.75042724609375 MULTI HCD FTMS 0 0 0 16632 18364.375 0.15373840024397856 6 -0.17053985595703125 6 Unmodified _SVPTLPDDI_ CON__P00978 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94791 NaN 13083 3553 16632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16640 71.272 NaN 1412500 35 0 177400 0.326 + 6765 FPQKWPDLL 9 109 572.3134703925194 1142.6123878518388 2 572.3135375976562 MULTI HCD FTMS 0 0 0 16639 721294.125 0.7441046051647888 -1 0.02286529541015625 1 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 118.0683919894846 0.0016252157255221692 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L} 9 0 + 82.745 0 0 7.2417 7.2417 92.105 0 0 0 13.464946458643311 9.647190419328936 9.647190419328936 11.822581265925436 0 2.1549471895720984 1.5228787452803376 1.2478499570595205 0.5228787452803376 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWP[{I|L}V]E;{M(Oxidation (M))|F}P[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWP[{I|L}V]E;[QP]{M(Oxidation (M))|F}KWPD{I|L}{I|L};[PA]G{M(Oxidation (M))|F}KWPD{I|L}{I|L} 7.2417;6.207;6.0633;5.9547;5.383;5.2574;4.92;4.3483;3.9829;3.714 +;-;+;-;-;-;-;-;-;- + 5384 NaN NaN 309664.5 NaN 13084 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16641 71.277 NaN 701050 35 0 119050 0.261 + 24543 RYLETILEI 9 82 575.3294467560155 1148.644340578831 2 575.32958984375 MULTI HCD FTMS 0 0 0 16639 245902.09375 0.40451542253324185 3 -0.09529876708984375 2 Unmodified _RYLETILEI_ ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP 34.93206674587334 0.08860942999206235 2 {[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}{I|L}E{I|L} 10 5 + 53.932 0 0 4.6953 4.6953 83.147 0 0 0 2.6760624017703094 31.816271552006654 2.6760624017703094 3.0102999566398125 0 1.25 0 0.3807196863200844 0 {[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}V{[SA]|[TG]}Y{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}E{I|L}{I|L};[VP][HV]ET{I|L}{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[SG]Y{I|L}{I|L}G[KG];{[QN]|[E{I|L}]|[KN]}V{[SA]|[TG]}Y{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V{[SA]|[TG]}Y{I|L}{I|L}G[KG];{[QN]|[E{I|L}]|[KN]}{I|L}[VP][HS]{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}V[{I|L}P][HS]{I|L}E{I|L};[VP][HV]ET{I|L}E{I|L}{I|L} 4.6953;4.4332;3.8013;3.7219;3.5659;3.5393;3.3039;3.3038;3.0417;2.828 -;-;-;-;-;-;-;-;-;- 718 NaN NaN 201815.5 NaN 13085 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16642 71.28 NaN 544970 35 0 98487 0.261 + 16236 LPWSKAWEL 9 79 565.3056388833058 1128.5967248334116 2 565.3057250976562 MULTI HCD FTMS 0 0 0 16639 276978.21875 0.15522788523974262 7 -0.200103759765625 3 Unmodified _LPWSKAWEL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 78.06048673739656 0.006479972202176041 2 {I|L}PWSKAWE{I|L} 9 0 + 90.05 0 0 7.9789 7.9789 90.277 0 0 0 19.606479483536873 6.891179610450266 6.891179610450266 6.891179610450266 0 2.778659694992122 1.6989700043360187 1.2134679910804405 0.3807196863200844 + + {I|L}PWSKAWE{I|L};[{I|L}P]WSKAWE{I|L};[WP]{I|L}SKAWE{I|L};[VP]{[WT]|[RM]}KAWE{I|L} 7.9789;7.3683;5.4199;3.3155 +;+;-;- + 516 + NaN NaN 179034.2 NaN 13086 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16643 71.283 NaN 323470 35 0 51772 0.262 -1 VPMEDINL 8 60 473.73125633104536 945.4479597288907 2 473.7310791015625 MULTI HCD FTMS 0 0 0 16639 185947.640625 0.24330563671207414 -18 0.4815521240234375 4 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 36.04419817259434 0.28174663821216267 2 {I|L}N{I|L} 3 -1 37.505 0 0 3.9669 0 0 587.2260226006188 0 587.2260226006188 0 20.440228147639203 0 0 0 0.75 0 0 0.3807196863200844 {I|L}N{I|L} 3.9669 + + 45 NaN NaN 146392.6 NaN 13087 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16644 71.287 NaN 640420 35 0 85912 0.261 + 29435 TYTDRVFFL 9 79 581.3003855833391 1160.5862182334781 2 581.3004760742188 MULTI HCD FTMS 0 0 0 16639 109629.7265625 0.3559305589938597 7 -0.200103759765625 5 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 49.93300154707207 0.03166451819912738 2 YMDTSH{I|L}{M(Oxidation (M))|F} 8 7 66.064 0 0 5.6923 0 0 148.15386692667374 0 148.15386692667374 0 33.15146474325326 0 0 0 0.9634679910804405 0 1.1549471895720984 0 YMDTSH{I|L}{M(Oxidation (M))|F} 5.6923 - 749 + NaN NaN 196139.9 NaN 13088 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16645 71.29 NaN 511500 35 0 84299 0.261 -1 YMLQKDLLF 9 82 593.8107176541263 NaN 0 593.7990112304688 PEAK HCD FTMS 0 0 0 16639 7684.91162109375 0.3914981609507854 1 -0.03284454345703125 6 Oxidation (M) _YM(Oxidation (M))LQKDLLF_ tr|U7SL85|U7SL85_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02014PE=4SV=1 7.910154910731844 0.25691533546754686 2 W 1 -1 6.9897 0 0 0.58955 0 0 184.14346447882536 812.3543795221311 996.4978440009565 0 0 0 0 0 0 0 0 0 W 0.58955 - 24 + NaN NaN 174189.3 NaN 13089 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16646 71.293 NaN 183980 35 0 22047 0.261 + 18060 MLYEEDLQN 9 70 577.7542570310239 1153.4939611288478 2 577.7537841796875 MULTI HCD FTMS 0 0 0 16639 68415 1 0 0 7 Unmodified _MLYEEDLQN_ ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 13.90604991867851 0.24021115267848145 2 YP{I|L}YC 5 7 38.148 0 0 3.3072 0 0 0 511.19513879947493 511.19513879947493 22.57490805844361 0 0 0 0 0.6694451763165201 0 0 0 YP{I|L}YC 3.3072 - 95 + NaN NaN 115840.3 NaN 13090 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16647 71.297 NaN 122070 35 0 14790 0.261 -1 MNGMEVVIL 9 32 511.2546005039294 NaN 0 511.2549133300781 PEAK HCD FTMS 0 0 0 16639 27576.1953125 0.5505298128465373 7 -0.200103759765625 8 Oxidation (M) _MNGM(Oxidation (M))EVVIL_ DCAF7|p.D243N|1|0.27|ENSG00000136485|chr17:63583700-63583700|G/A|missense_variant 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 6.9897 0 0 0.68493 0 0 131.98875796213093 772.3995817735812 904.3883397357122 0 0 0 0 0 0 0 0 0 {I|L} 0.68493 + + 1 + NaN NaN 111447.9 NaN 13091 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16648 71.3 NaN 242610 35 0 17242 0.262 + 21237 PRGKTRAG 8 81 421.7513645021715 NaN 0 421.7517395019531 PEAK HCD FTMS 0 0 0 16639 27346.337890625 0.2595005657689019 -9 0.232421875 9 Unmodified _PRGKTRAG_ REV__ENST00000536214.1_2_17:656373-656511:+|nuORF 7.289230182591677 0.38822285293237185 2 W 1 -1 6.9897 0 0 0.83064 0 0 116.08418061533958 536.302389313297 652.3865699286366 0 0 0 0 0 0 0 0 0 W 0.83064 - 22 + NaN NaN 126482.5 NaN 13092 3554 16639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16650 71.305 NaN 1587600 35 0 359380 0.327 + 30562 VNLFPFNVL 9 94 531.8027404340687 1061.5909279349373 2 532.31884765625 MULTI HCD FTMS 0 0 0 16649 75569.21875 0.8919751962203237 -3 0.09185028076171875 1 Unmodified _VNLFPFNVL_ ENST00000471743.1_1_2:26435372-26437931:-|nuORF 14.838274106304384 0.23215694253501695 2 [VP]{I|L}Q[HQ]EV{I|L} 9 5 + 36.589 0 0 3.4466 3.4466 85.713 0 0 0 7.12255687625041 8.440899702813034 7.12255687625041 9.208187539523756 0 0.4247425010840047 1.6989700043360187 0 0 [VP]{I|L}Q[HQ]EV{I|L};[VP]{I|L}[AG][HQ]EV{I|L};[VP]{I|L}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}QK{I|L};[VP]{I|L}QAA[HD]V{I|L};[KT]{M(Oxidation (M))|F}{[ET]|[MV]}QPV{I|L};[Q{I|L}]{I|L}HPNEV{I|L};[VP]{I|L}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}[AG]K{I|L};[VP]{I|L}Q{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VV{M(Oxidation (M))|F};[VP]{I|L}Q[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[VP]{I|L}{M(Oxidation (M))|F}[KT]V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.4466;2.5792;2.4404;2.178;2.0163;1.9542;1.573;1.4817;1.4461;1.2895 -;-;-;-;-;-;-;-;-;- 808 NaN NaN 331275.6 NaN 13093 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16651 71.309 NaN 832370 35 0 123900 0.261 + 34551 YPIYGYDEL 9 97 566.7634393057419 1131.5123256782838 2 566.763671875 MULTI HCD FTMS 0 0 0 16649 472487.21875 1 0 0 2 Unmodified _YPIYGYDEL_ ENSG00000137073|ENST00000379238|UBAP2;nc|ENSG00000137073|Q5T6F2-2|UBAP2 89.42679046578446 0.004540987215715461 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YGYDE{I|L} 9 0 + 53.215 0 0 4.703 4.703 90.591 0 0 0 3.2568864632742844 31.2424576969268 3.2568864632742844 36.97743773147742 0 1.6382104921644451 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YGYDE{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[C(Carbamidomethyl (C))R][HV]DE{I|L};{[QN]|[E{I|L}]|[KN]}DYGY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[QN]|[E{I|L}]|[KN]}GY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YGY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[C(Carbamidomethyl (C))R][HD]VE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[HV]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WM]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L};{[QN]|[E{I|L}]|[KN]}D[HV]{M(Oxidation (M))|F}VHH 4.703;1.435;0.84036;0.75472;0.68474;0.57881;0.31738;0.050256;0.034997 +;-;-;-;-;-;-;-;- + 988 NaN NaN 225095.4 NaN 13094 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16652 71.313 NaN 680840 35 0 109070 0.261 + 7748 FYMDTSHLF 9 93 580.7577429394743 1159.5009329457484 2 580.7577514648438 MULTI HCD FTMS 0 0 0 16649 185871.421875 0.9679757103073496 1 -0.0328521728515625 3 Unmodified _FYMDTSHLF_ ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C 107.99703571036002 0.003269392969029945 2 {M(Oxidation (M))|F}YMDTSH{I|L}{M(Oxidation (M))|F} 9 0 + 85.513 0 0 7.375 7.375 93.657 0 0 0 69.94014118058897 16.478174818886373 16.478174818886373 18.494850021680094 0 2.455112052208703 0 1.0941876774005248 0 + + {M(Oxidation (M))|F}YMDTSH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]MDTSH{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]MDTSH{I|L}{M(Oxidation (M))|F};[C(Carbamidomethyl (C))C][RH]TSH{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}DTSH{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}DTSH{I|L}{M(Oxidation (M))|F};[C(Carbamidomethyl (C))C]T[RH]SH{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[HV]{[ET]|[MV]}A{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[YC]|[HE]}SH{M(Oxidation (M))|F}{I|L} 7.375;5.7799;4.0862;4.0481;3.1784;3.0521;3.0141;2.2472;2.2268;1.6263 +;-;-;+;-;-;-;-;-;- + 864 + NaN NaN 194604.9 NaN 13095 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16653 71.316 NaN 322990 35 0 46896 0.261 + 1236 AYLPKILQI 9 79 529.8340713198602 1057.6535897065203 2 529.8344116210938 MULTI HCD FTMS 0 0 0 16649 92189.015625 0.09664711129154521 8 -0.21964263916015625 4 Unmodified _AYLPKILQI_ ENSG00000120800|ENST00000261637|UTP20 54.773552608820026 0.024892918755467567 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y 4 6 37.981 0 0 3.591 0 0 0 544.3893739684921 544.3893739684921 6.738414700167979 0 0 0 0 1 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y 3.591 - 113 NaN NaN 136090 NaN 13096 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16654 71.32 NaN 207290 35 0 13419 0.261 + 7831 FYQRFPLSF 9 61 602.8112951626049 1203.6080373920097 2 602.8112182617188 MULTI HCD FTMS 0 0 0 16649 101731.1484375 0.20903683903929002 8 -0.21964263916015625 5 Unmodified _FYQRFPLSF_ ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF 38.175570920033316 0.07371992880350783 2 {M(Oxidation (M))|F}RWS{M(Oxidation (M))|F} 5 5 35.918 0 0 2.9842 0 0 462.247362205275 0 462.247362205275 0 31.736387966791284 0 0 0 1 0 0 0 {M(Oxidation (M))|F}RWS{M(Oxidation (M))|F} 2.9842 - 113 NaN NaN 128038.8 NaN 13097 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16655 71.323 NaN 364350 35 0 19381 0.261 + 26908 SYLDQVKLQF 10 98 620.8322020456066 1239.649851158013 2 620.8314819335938 MULTI HCD FTMS 0 0 0 16649 93895.34375 0.7325587788228619 -3 0.09185028076171875 6 Unmodified _SYLDQVKLQF_ ENSG00000169375|ENST00000394947|SIN3A 81.9152076656658 0.003466872489127602 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}Q{M(Oxidation (M))|F} 10 0 + 53.396 0 0 4.3073 4.3073 85.208 0 0 0 5.764837301042718 33.17146613611058 5.764837301042718 9.164539485499255 0 2.4291746928241125 0 0.4247425010840047 0.3252574989159953 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}[AG]{M(Oxidation (M))|F};[Y{I|L}]SDQVK{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]SDQVK{I|L}[AG]{M(Oxidation (M))|F} 4.3073;3.568;3.3675;2.6282 +;-;-;- + 2593 NaN NaN 149860.9 NaN 13098 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16656 71.326 NaN 232040 35 0 49734 0.261 + 11599 IYTLCVYVL 9 60 543.8011517017167 1085.5877504702332 2 543.80224609375 MULTI HCD FTMS 0 0 0 16649 93098.765625 0.7085631510643513 2 -0.0624542236328125 7 Unmodified _IYTLCVYVL_ ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4 23.1484247019978 0.1603590852062899 2 DV{I|L} 3 7 32.945 0 0 3.0348 0 0 740.3957386701187 0 740.3957386701187 0 11.061062652429925 0 0 0 0.3494850021680094 0 0.3252574989159953 0 DV{I|L} 3.0348 - 85 NaN NaN 118042.8 NaN 13099 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16657 71.33 NaN 398020 35 0 80767 0.263 + 23180 RFLDDLGLKF 10 62 408.56412671113674 1222.6705507336103 3 408.56414794921875 MULTI HCD FTMS 0 0 0 16649 196622.546875 0.0694780115471864 11 -0.30828094482421875 8 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 33.82136114134338 0.19902429369531874 2 D{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 6 4 58.02 0 0 4.7454 0 0 531.2776966779312 0 531.2776966779312 0 51.030768805449185 0 0 0 2 0 1.1989700043360187 0 + D{I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 4.7454 + + 85 NaN NaN 144544.8 NaN 13100 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16658 71.333 NaN 128070 35 0 8573.6 0.261 -1 YMEEVPLAL 9 51 540.7677603717242 1079.5209678102483 2 540.769287109375 MULTI HCD FTMS 0 0 0 16649 27340.720703125 0.24967779078307203 24 -0.6546630859375 9 Oxidation (M) _YM(Oxidation (M))EEVPLAL_ ENSG00000124608|ENST00000244571|AARS2 7.910154910731844 0.2910521888787154 2 A{I|L} 2 -1 25.969 0 0 2.4056 0 0 877.3918305949154 0 877.3918305949154 0 20.48455006504028 0 0 0 0.5 0 0 0 A{I|L} 2.4056 + + 15 NaN NaN 111221.9 NaN 13101 3555 16649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16660 71.338 NaN 2457700 35 0 641930 0.327 -1 0 107 535.8029997198473 1069.5914465064945 2 535.8034057617188 MULTI HCD FTMS 0 0 0 16659 1269120 0.46478046143684887 3 -0.08197784423828125 1 NaN NaN 2 VSVWDV{I|L} 7 -1 60.649 0 0 5.6703 0 0 253.15376479316564 0 253.15376479316564 0 19.033394503007443 0 0 0 1.7279659778248622 0 0.6694451763165201 0 VSVWDV{I|L} 5.6703 - 2738 NaN NaN 465181.4 NaN 13102 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16661 71.342 NaN 1338700 35 0 192240 0.261 + 16024 LPSAFYIKL 9 93 526.3130796283597 1050.6116063235193 2 526.3131713867188 MULTI HCD FTMS 0 0 0 16659 777901.8125 0.6359388726744656 1 -0.02960205078125 2 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 110.6747026088012 0.0028322563155251486 2 {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L} 9 0 + 100.67 0 0 9.5822 9.5822 96.962 0 0 0 80.49471895720984 11.879617791072832 11.879617791072832 22.214628317912783 0 2.4291746928241125 1.6989700043360187 0.805462187404089 0.2742275032520141 + + {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P]SA{M(Oxidation (M))|F}YK{I|L}{I|L};[PS]{I|L}A{M(Oxidation (M))|F}Y{I|L}K{I|L};[PS]A{I|L}{M(Oxidation (M))|F}Y{I|L}K{I|L};{[SA]|[TG]}P{I|L}{M(Oxidation (M))|F}Y{I|L}K{I|L};[PS]A{M(Oxidation (M))|F}{I|L}Y{I|L}K{I|L};{[SA]|[TG]}P{M(Oxidation (M))|F}{I|L}Y{I|L}K{I|L};[PS]{I|L}A{M(Oxidation (M))|F}YK{I|L}{I|L};[PS]A{I|L}{M(Oxidation (M))|F}YK{I|L}{I|L} 9.5822;7.4678;6.2361;4.8017;4.6069;4.5147;3.6726;3.5804;3.57;3.3752 +;+;-;-;-;-;-;-;-;- + 897 + NaN NaN 296780.2 NaN 13103 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16662 71.346 NaN 1057100 35 0 103370 0.261 + 4722 EYQKVWNLF 9 102 613.8136476744669 1225.6127424157337 2 613.8142700195312 MULTI HCD FTMS 0 0 0 16659 557283.8125 0.06005234204471395 17 -0.46106719970703125 3 Unmodified _EYQKVWNLF_ ENSG00000059378|ENST00000263549|PARP12 108.26204199777034 0.0032261299471418544 2 [YE]QKVWN{I|L}{M(Oxidation (M))|F} 9 0 + 79.374 0 0 6.4763 6.4763 87.11 0 0 0 5.874628727857058 5.874628727857058 5.874628727857058 5.874628727857058 0 2.610924374808178 1 2.579689690656103 0 + + [YE]QKVWN{I|L}{M(Oxidation (M))|F};EYQKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWN{I|L}{M(Oxidation (M))|F};[YE]QKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWN{I|L}{M(Oxidation (M))|F};EY[AG]KVWN{I|L}{M(Oxidation (M))|F};[YQ]EKVWN{I|L}{M(Oxidation (M))|F};[YE][AG]KVWGG{I|L}{M(Oxidation (M))|F};EYQKVWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[CA]|SS}VWGG{I|L}{M(Oxidation (M))|F} 6.4763;5.9969;5.7249;5.7249;5.6308;5.2456;5.1349;4.9772;4.935;4.8831 +;+;-;-;-;-;-;-;-;- + 3708 NaN NaN 258802.2 NaN 13104 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16663 71.349 NaN 805220 35 0 116160 0.261 + 18735 MYTKLFVGF 9 93 553.2910835461129 1104.5676141590257 2 553.29150390625 MULTI HCD FTMS 0 0 0 16659 376405.46875 0.6762388868091093 -2 0.06569671630859375 4 Unmodified _MYTKLFVGF_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 142.0795815696625 1.719916958814042E-05 2 MYTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 9 0 + 121.24 0 0 10.976 10.976 97.631 0 0 0 102.37965367563433 16.478174818886373 16.478174818886373 22.33037234269112 0 2.9291746928241125 2 0.7614393726401688 0 + + MYTK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}TK{I|L}{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};MY[KG]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V][{I|L}T] 10.976;8.9546;2.5857 +;+;- + 1189 + NaN NaN 224387.9 NaN 13105 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16664 71.352 NaN 780280 35 0 143480 0.261 + 18448 MPVLEQSVL 9 77 508.27818881042964 1014.5418246876593 2 508.2784729003906 MULTI HCD FTMS 0 0 0 16659 256333.53125 0.5643447845837672 -2 0.06569671630859375 5 Unmodified _MPVLEQSVL_ ENSG00000073614|ENST00000399788|KDM5A;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 47.594388314883695 0.03493607795751234 2 {I|L}EQSV{I|L} 6 3 62.568 0 0 6.1671 0 0 327.16108901191564 0 327.16108901191564 0 47.96388461952553 0 0 0 2.1549471895720984 0 0.9247425010840047 0 + {I|L}EQSV{I|L} 6.1671 + + 339 NaN NaN 213042.4 NaN 13106 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16665 71.356 NaN 642280 35 0 47747 0.261 + 4835 EYYRGFTLF 9 85 598.2921811755767 1194.5698094179534 2 598.2929077148438 MULTI HCD FTMS 0 0 0 16659 227991.578125 0.7597768385513511 -2 0.06569671630859375 6 Unmodified _EYYRGFTLF_ ENSG00000179335|ENST00000395066|CLK3;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3 55.50274090549119 0.023872834264864425 2 [YE]YR{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}{M(Oxidation (M))|F} 9 0 + 46.021 0 0 3.8525 3.8525 88.904 0 0 0 6.974987195809419 16.23975896461701 6.974987195809419 27.00827206916173 0 1.742992819099939 1.3010299956639813 1.5 0 + + [YE]YR{[CT]|[{M(Oxidation (M))|F}G]}T{I|L}{M(Oxidation (M))|F};[YE]Y[QP][HV]{I|L}{M(Oxidation (M))|F};[YE]KK[MD]W[VP] 3.8525;1.5916;0.36621 +;-;- + 187 NaN NaN 187938.2 NaN 13107 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16666 71.359 NaN 300540 35 0 23694 0.261 + 5627 FMDECHATGFL 11 74 635.7649617347255 1269.5153705362509 2 635.7657470703125 MULTI HCD FTMS 0 0 0 16659 107601.9296875 0.47233299949258584 4 -0.111541748046875 7 Unmodified _FMDECHATGFL_ ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion 3.2813086475875832 0.40452996145431686 2 VQAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 9 10 34.953 0 0 2.7532 0 0 163.94073782316337 0 163.94073782316337 0 21.765323173265017 0 0 0 0 0 0.9247425010840047 0 VQAWNVD{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.7532 - 744 + NaN NaN 143259.5 NaN 13108 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16667 71.362 NaN 262640 35 0 42630 0.263 + 32889 YAAAGSAYLL 10 59 500.25901762622726 998.5034823192545 2 500.259521484375 MULTI HCD FTMS 0 0 0 16659 89548.3046875 0.43489470002268155 -2 0.06569671630859375 8 Unmodified _YAAAGSAYLL_ REV__ENSG00000090530|ENST00000319332|P3H2 25.399314129420986 0.2735354021946395 2 AYAE 4 -1 52.907 0 0 5.2987 0 0 0 561.3003023736936 561.3003023736936 27.690775249321078 0 0 0 0 0.8494850021680094 2 0 0 AYAE 5.2987 - 34 + NaN NaN 139180.2 NaN 13109 3556 16659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16669 71.367 NaN 2892700 35 0 373760 0.327 + 1599 AYVLNIVRF 9 103 547.8215331276353 1093.6285133220706 2 547.82177734375 MULTI HCD FTMS 0 0 0 16668 1527857.625 0.7121664205548144 1 -0.026153564453125 1 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 128.3654064809346 0.00070410514679239 2 AYV{I|L}N{I|L}VR{M(Oxidation (M))|F} 9 0 + 115.67 0 0 10.577 10.577 94.458 0 0 0 66.68698160330543 14.973024840566467 14.973024840566467 9.208187539523749 0 2.6989700043360187 1.6989700043360187 0 0.6109243748081782 + + AYV{I|L}N{I|L}VR{M(Oxidation (M))|F};AYV{I|L}GG{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VN{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}NV{I|L}GV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[R{I|L}]{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}VN{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}NV{I|L}R{M(Oxidation (M))|F} 10.577;9.7349;8.7907;8.4011;7.6944;7.6634;7.3881;7.3764;7.3048;6.9985 +;-;-;+;-;-;-;-;-;- + 3203 + NaN NaN 531314.9 NaN 13110 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16670 71.372 NaN 1502300 35 0 92263 0.261 + 19825 NYAWVYYHL 9 101 614.7931119449629 1227.5716709567257 2 614.7930908203125 MULTI HCD FTMS 0 0 0 16668 420466.875 0.006618918466320007 87 -2.3729476928710938 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 131.26759243768294 0.0005280990274065272 2 [YN]AWVYYH{I|L} 9 0 + 95.704 0 0 7.7962 7.7962 94.852 0 0 0 29.80405937147151 16.478174818886373 16.478174818886373 23.06474666879045 0 2.4604093769761874 1.6989700043360187 0 1.9037996802594792 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]A[{M(Oxidation (M))|F}V]VCR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]A[VS]VYR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};E[HQ]{[TV]|[{I|L}S]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W[YG]YYH{I|L};[NS]{M(Oxidation (M))|F}WVYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.7962;5.9173;4.4788;4.2338;4.2338;3.9212;3.6701;3.3469;3.0076;2.994 +;-;-;-;-;-;-;-;-;- + 2481 NaN NaN 328738.1 NaN 13111 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16671 71.375 NaN 1372900 35 0 147030 0.261 + 12953 KYIDYIFNV 9 103 587.8103983506529 1173.6062437681057 2 587.8108520507812 MULTI HCD FTMS 0 0 0 16668 847256.9375 0.4291202423312953 -6 0.17386627197265625 3 Unmodified _KYIDYIFNV_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 93.93812099017352 0.0044227730261779084 2 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV 9 2 + 92.47 0 0 7.8791 7.8791 91.847 0 0 0 11.19325543266271 16.478174818886373 11.19325543266271 9.208187539523749 0 2.274227503252014 1.3979400086720375 0.7638793319624579 0.3494850021680094 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}GGV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}NV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DYK{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DYK{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DY{I|L}K{M(Oxidation (M))|F}NV;[Y{I|L}]KDY[{M(Oxidation (M))|F}V]QV 7.8791;7.0945;6.9253;6.8863;6.1407;6.1179;6.1017;5.3333;5.0811;4.9414 -;-;+;-;-;-;-;-;-;- + 6768 NaN NaN 319461.5 NaN 13112 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16672 71.379 NaN 480090 35 0 54515 0.261 + 6450 FPIEAGDMF 9 58 521.731240149677 1041.4479273661539 2 521.7314453125 MULTI HCD FTMS 0 0 0 16668 126718.4765625 0.5974260751777254 4 -0.10480499267578125 4 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 61.357469665136826 0.01568246967499496 2 EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 53.382 0 0 5.1257 0 0 357.204881736525 0 357.204881736525 0 50.283030065732234 0 0 0 1.9749073637206092 0 0.4247425010840047 0 + EAGD{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1257 + + 60 NaN NaN 184945.9 NaN 13113 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16673 71.382 NaN 528920 35 0 74347 0.261 + 10450 IPDEVFDAV 9 82 502.75047509311037 1003.4863972530208 2 502.750732421875 MULTI HCD FTMS 0 0 0 16668 103649.3125 0.6033417949937652 -1 0.02960205078125 5 Unmodified _IPDEVFDAV_ ENSG00000066557|ENST00000370952|LRRC40;LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}DAV 4 5 35.865 0 0 3.574 0 0 553.2739794189397 0 553.2739794189397 0 12.182816909036255 0 0 0 0.9947026752325154 0 0 0 + {M(Oxidation (M))|F}DAV 3.574 + + 267 NaN NaN 190043.5 NaN 13114 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16674 71.385 NaN 521560 35 0 23222 0.261 + 26909 SYLDQVKLQF 10 113 620.8322020456066 1239.649851158013 2 621.3341064453125 MULTI HCD FTMS 0 0 0 16668 85312.6796875 0.6946602495122758 1 -0.026153564453125 6 Unmodified _SYLDQVKLQF_ ENSG00000169375|ENST00000394947|SIN3A 49.74193281347159 0.07872806610313077 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}AG{M(Oxidation (M))|F} 11 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 40.932 3.7236 1.4889 3.3019 3.3019 60.293 0 0 0 0 10.350716160957841 0 0 0 2.2416440611282624 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}DQVK{I|L}AG{M(Oxidation (M))|F} 3.3019 - 5676 + NaN NaN 169102.2 NaN 13115 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16675 71.389 NaN 438190 35 0 33371 0.261 + 29070 TYGDAGLTYTF 11 66 604.7781507063605 1207.541748479521 2 604.7794799804688 MULTI HCD FTMS 0 0 0 16668 134942.546875 0.599267693955526 -1 0.02960205078125 7 Unmodified _TYGDAGLTYTF_ ENSG00000189046|ENST00000429722|ALKBH2 96.36657018975838 0.015470569860761748 2 [YT][DG]A{[VA]|[{I|L}G]}TYT{M(Oxidation (M))|F} 11 0 + 78.038 0 0 6.4626 6.4626 90.445 0 0 0 13.26970017961446 41.317917159827815 13.26970017961446 10.867520120019051 0 1.8494850021680094 1.5228787452803376 1.7104093769761874 0 + + [YT][DG]A{[VA]|[{I|L}G]}TYT{M(Oxidation (M))|F};[YT][DG][Q{I|L}]TYT{M(Oxidation (M))|F};[YT][DG]A{[VA]|[{I|L}G]}T{M(Oxidation (M))|F}[YT];{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}A{[VA]|[{I|L}G]}TYT{M(Oxidation (M))|F};[YT][DG][Q{I|L}]T{M(Oxidation (M))|F}[YT];{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}[Q{I|L}]TYT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}A{[VA]|[{I|L}G]}T{M(Oxidation (M))|F}[YT];[YT]Y[H{I|L}]N[HN]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[CA]|SS}[Q{I|L}]T{M(Oxidation (M))|F}[YT];[YT]YN[H{I|L}][HN]{M(Oxidation (M))|F} 6.4626;5.5626;4.8496;4.8063;3.9496;3.9064;3.1933;2.9265;2.2934;1.4328 +;-;-;-;-;-;-;-;-;- + 568 NaN NaN 159850.5 NaN 13116 3557 16668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16677 71.394 NaN 2024100 35 0 455060 0.327 + 872 AYAENIALL 9 68 489.2688059296335 976.523058926067 2 489.2688293457031 MULTI HCD FTMS 0 0 0 16676 1728368.5 1 0 0 1 Unmodified _AYAENIALL_ ENSG00000196455|ENST00000356763|PIK3R4 152.41221235671458 6.276234901293889E-06 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L} 9 0 + 109.84 0 0 11.248 11.248 97.958 0 0 0 16.980523937757752 71.29977080076108 16.980523937757752 25.757659435244733 0 2.7302046884880937 1.2218487496163564 0.9947026752325154 1.6549471895720984 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEN{I|L}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AEGG{I|L}A{I|L}{I|L};[{I|L}A]{I|L}N{[CP]|[EA]}AY{I|L};[{I|L}A]N{I|L}{[CP]|[EA]}AY{I|L};[{I|L}A]{I|L}N{[CP]|[EA]}{I|L}AY;[{I|L}A]N{I|L}{[CP]|[EA]}{I|L}AY;[{I|L}A]{I|L}GG{[CP]|[EA]}AY{I|L};[{I|L}A]GG{I|L}{[CP]|[EA]}AY{I|L};[{I|L}A]{I|L}N{[CP]|[EA]}A{I|L}Y;[{I|L}A]N{I|L}{[CP]|[EA]}A{I|L}Y 11.248;8.6103;4.0944;3.9664;2.854;2.7261;2.7165;2.5885;2.4041;2.2762 +;-;-;-;-;-;-;-;-;- + 772 NaN NaN 400142.1 NaN 13117 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16678 71.398 NaN 425900 35 0 115650 0.261 -1 LFMMHCVEVL 10 47 639.8052086476713 1277.5958643621425 2 640.3073120117188 MULTI HCD FTMS 0 0 0 16676 106433.140625 0.8369244518808012 1 -0.02622222900390625 2 Carbamidomethyl (C) _LFMMHC(Carbamidomethyl (C))VEVL_ ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP 6.2057823575117 0.44245551207394906 2 VV{I|L} 3 -1 29.693 0 0 2.3241 0 0 948.3616810529312 0 948.3616810529312 0 20.228787452803374 0 0 0 0.5 0 0 0 VV{I|L} 2.3241 - 13 NaN NaN 155335 NaN 13118 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16679 71.402 NaN 385290 35 0 108610 0.263 -1 IMSECLMF 8 62 515.7244126987731 1029.4342724643461 2 515.7244873046875 MULTI HCD FTMS 0 0 0 16676 161553.421875 1 0 0 3 Carbamidomethyl (C) _IMSEC(Carbamidomethyl (C))LMF_ ENST00000472180.1_1_1:224001926-224009041:-|nuORF 6.354104778181461 0.5325651638111438 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 3 -1 25.942 0 0 2.52 0 0 0 653.2476324099117 653.2476324099117 10.457574905606748 0 0 0 0 0 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E 2.52 - 60 NaN NaN 154058.4 NaN 13119 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16680 71.405 NaN 546480 35 0 63441 0.261 + 7896 FYVNVIVIF 9 79 557.3205735576392 1112.6265941820784 2 557.8048095703125 MULTI HCD FTMS 0 0 0 16676 32431.482421875 1 0 0 4 Unmodified _FYVNVIVIF_ ENSG00000169777|ENST00000382492|TAS2R1;TAS2R1|p.I62T|1|0.47|ENSG00000169777|chr5:9629848-9629848|A/G|missense_variant 19.438996006549623 0.19240772610395238 2 {I|L}P{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 8 7 27.344 0 0 2.4576 0 0 164.1095286204997 0 164.1095286204997 0 16.85972531752853 0 0 0 0 0 0 0 {I|L}P{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 2.4576 - 425 + NaN NaN 178019.9 NaN 13120 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16681 71.408 NaN 145940 35 0 23880 0.261 + -1 CCLWLALL 8 44 496.25831143508907 990.5020699369782 2 496.7703552246094 MULTI HCD FTMS 0 0 0 16676 7827.65234375 0.8788220266973659 -1 0.026153564453125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))CLWLALL_ REV__ENSG00000134250|ENST00000256646|NOTCH2;REV__ENST00000479412.2_1_1:120548017-120612131:-|nuORF;REV__nc|ENSG00000286019|P0DPK3|NOTCH2NLB;REV__NOTCH2-SPAG17|1|fusion;REV__NOTCH2-SPAG17|2|fusion;REV__NOTCH2|p.H656Lfs*46|1|0.18|ENSG00000134250|chr1:119959451-119959451|T/-|frameshift_variant;REV__NOTCH2|p.Q1584Rfs*17|1|0.32|ENSG00000134250|chr1:119923745-119923745|T/-|frameshift_variant;REV__NOTCH2|p.R1111Gfs*96|1|0.26|ENSG00000134250|chr1:119937864-119937864|G/-|frameshift_variant;REV__NOTCH2|p.T160Cfs*19|1|0.17|ENSG00000134250|chr1:119997266-119997270|GTGGT/-|frameshift_variant;REV__NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant 17.086550045450526 0.4680768486079041 2 A{I|L}{I|L} 3 -1 19.27 0 0 1.9455 0 0 675.2894764630875 0 675.2894764630875 0 4.665762445130504 0 0 0 0.5 0 0 0 A{I|L}{I|L} 1.9455 + + 12 NaN NaN 99702.2 NaN 13121 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16682 71.412 NaN 204160 35 0 19911 0.261 + 22470 QQYAVFENIF 10 59 629.8085765039586 1257.6026000747172 2 629.8091430664062 MULTI HCD FTMS 0 0 0 16676 70146.2109375 0.06753576778909025 20 -0.5465545654296875 6 Unmodified _QQYAVFENIF_ REV__ENSG00000137860|ENST00000347644|SLC28A2 8.745405648335112 0.42901288225909884 2 {I|L}NW 3 -1 13.188 0 0 1.0486 0 0 183.08490244434648 658.2869967096311 841.3718991539777 0 0 0 0 0 0 0 0 0 {I|L}NW 1.0486 - 51 + NaN NaN 124450.7 NaN 13122 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16683 71.415 NaN 356460 35 0 21423 0.261 + 22672 QWPPDPPLHF 10 69 617.3057113166248 NaN 0 617.3062133789062 PEAK HCD FTMS 0 0 0 16676 56966.65234375 0.8309796211040128 7 -0.1835174560546875 7 Unmodified _QWPPDPPLHF_ ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF 10.073929032068715 0.33156240198919784 2 YVY 3 10 11.682 0 0 0.94779 0 0 166.16871268699794 638.210101811458 804.378814498456 0 0 0 0 0 0 0 0 0 YVY 0.94779 - 28 + NaN NaN 146703.8 NaN 13123 3558 16676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16685 71.42 NaN 1228800 35 0 165320 0.327 + 6766 FPQKWPDLL 9 102 572.3134703925194 1142.6123878518388 2 572.3135986328125 MULTI HCD FTMS 0 0 0 16684 623824.1875 0.6435522412329819 4 -0.1048126220703125 1 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 96.36657018975838 0.004359138328518304 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE 9 4 + 81.886 0 0 7.1665 7.1665 86.539 0 0 0 14.776296993281406 1.3076491590643968 1.3076491590643968 1.3076491590643968 0 1.3494850021680094 2 1.1382104921644451 0.75 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKPWD{I|L}{I|L};{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWP[{I|L}V]E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}[DP]{I|L};{I|L}MQKHS{[CA]|SS}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKAAKQPE 7.1665;7.0521;6.3607;6.2462;5.9135;5.8733;5.6494;5.314;5.3041;5.1596 -;+;-;-;-;+;-;-;-;- + 3333 NaN NaN 279969.6 NaN 13124 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16686 71.424 NaN 441690 35 0 76162 0.262 -1 VPMEDINL 8 52 473.73125633104536 945.4479597288907 2 473.7312316894531 MULTI HCD FTMS 0 0 0 16684 224710.84375 0.2940258598115846 -13 0.3572235107421875 2 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 42.09456458481378 0.20402248593209013 2 D{I|L}N{I|L} 4 -1 43.038 0 0 4.5522 0 0 472.20100600410314 0 472.20100600410314 0 28.345696093006808 0 0 0 0.8252574989159953 0 0.3807196863200844 0.4247425010840047 D{I|L}N{I|L} 4.5522 + + 68 NaN NaN 159444.3 NaN 13125 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16687 71.428 NaN 673850 35 0 115490 0.261 -1 DDCELCLESS 10 86 585.717698760345 1169.42084458749 2 585.7188720703125 MULTI HCD FTMS 0 0 0 16684 170839.640625 0.537445369384362 7 -0.193450927734375 3 Carbamidomethyl (C) _DDCELC(Carbamidomethyl (C))LESS_ ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5 3.5964929083625545 0.45626689593999237 2 E{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 45.433 0 0 3.8851 0 0 649.1654933511195 0 649.1654933511195 0 29.948500216800937 0 0 0 1.3494850021680094 0 0 0 E{M(Oxidation (M))|F}{I|L}{I|L} 3.8851 - 144 NaN NaN 194681.8 NaN 13126 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16688 71.431 NaN 444170 35 0 30632 0.261 + 29071 TYGDAGLTYTF 11 70 604.7781507063605 1207.541748479521 2 604.7778930664062 MULTI HCD FTMS 0 0 0 16684 153588.0625 0.6820707491072556 1 -0.02956390380859375 4 Unmodified _TYGDAGLTYTF_ ENSG00000189046|ENST00000429722|ALKBH2 114.20165948288297 0.01873520274434939 2 [YT][DG]AG{I|L}TYT{M(Oxidation (M))|F} 11 0 + 89.32 0 0 7.3968 7.3968 92.138 0 0 0 22.090384622532085 52.767351060743096 22.090384622532085 10.867520120019066 0 1.8494850021680094 1.6989700043360187 1.7416440611282626 0 + + [YT][DG]AG{I|L}TYT{M(Oxidation (M))|F};[YT][DG]Q{I|L}TYT{M(Oxidation (M))|F};[YT][DG]AG{I|L}T{M(Oxidation (M))|F}[YT];[YT][DG]Q{I|L}T{M(Oxidation (M))|F}[YT] 7.3968;6.4969;5.7838;4.8839 +;-;-;- + 865 NaN NaN 157764.4 NaN 13127 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16689 71.434 NaN 441280 35 0 65867 0.262 + 18121 MPDFDLHL 8 64 494.2338834211016 986.4532139090032 2 494.23370361328125 MULTI HCD FTMS 0 0 0 16684 219423 0.13823420066884418 -6 0.17053985595703125 5 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 70.71552829651908 0.028868882208589616 2 MPDMM{I|L} 6 4 64.927 0 0 6.5818 0 0 0 265.12983118228755 265.12983118228755 39.009009156570684 0 0 0 0 2.017220322351953 1.5228787452803376 0.6505149978319906 0 MPDMM{I|L} 6.5818 - 110 + NaN NaN 156546 NaN 13128 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16690 71.438 NaN 1024300 35 0 186170 0.261 + 25873 SMTRYFYLF 9 82 622.2945419389652 1242.5745309447302 2 622.7967529296875 MULTI HCD FTMS 0 0 0 16684 209233.375 0.16378049908098533 -4 0.11483001708984375 6 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 49.55428908609986 0.03219431099695407 2 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 4 54.196 0 0 4.3616 0 0 491.2162342755875 0 491.2162342755875 0 31.692066049390206 0 0 0 1.774227503252014 0 0 0 + Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.3616 + + 1095 NaN NaN 241421.6 NaN 13129 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16691 71.441 NaN 367420 35 0 25808 0.261 + 30677 VPELEEVARVL 11 78 627.3582549422908 1252.7019569513816 2 627.3587646484375 MULTI HCD FTMS 0 0 0 16684 115542.8828125 0.9537542198149898 1 -0.02956390380859375 7 Unmodified _VPELEEVARVL_ ENSG00000104881|ENST00000360957|PPP1R13L 60.94344597037026 0.036480086864956726 2 VPE{I|L}EEVARV{I|L} 11 0 + 95.61 0 0 7.6323 7.6323 94.128 0 0 0 74.64056395798838 9.229404389495912 9.229404389495912 18.39394387499516 0 3.2416440611282624 0 0.3252574989159953 0 + + VPE{I|L}EEVARV{I|L};[EP]V{I|L}EEVARV{I|L};[EP]{I|L}VEEVARV{I|L};[EP]V{I|L}EEAVRV{I|L};[EP]{I|L}VEEAVRV{I|L};[EP]V{I|L}{[VA]|[{I|L}G]}EERV{I|L};[EP]{I|L}V{[VA]|[{I|L}G]}EERV{I|L} 7.6323;6.1639;5.9054;5.4471;5.1886;3.9366;3.678 +;-;-;-;-;-;- + 877 + NaN NaN 151987.9 NaN 13130 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16692 71.444 NaN 429400 35 0 47271 0.261 + 24544 RYLETILEI 9 84 575.3294467560155 1148.644340578831 2 575.3301391601562 MULTI HCD FTMS 0 0 0 16684 44487.35546875 0.07318287176978515 8 -0.2130279541015625 8 Unmodified _RYLETILEI_ ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;ENST00000512908.2_1_5:70398727-70422449:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP 24.990960013464015 0.14443998892849796 2 E{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TW 8 6 39.544 0 0 3.4427 0 0 131.09640740049457 0 131.09640740049457 0 7.640595913864772 0 0 0 0.8807196863200843 0 0.6747425010840047 0 E{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}TW 3.4427 - 717 + NaN NaN 161899.6 NaN 13131 3559 16684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16694 71.449 NaN 641880 35 0 67602 0.326 + 11537 IYSIDFTRF 9 90 581.3006497563529 1160.5867465795056 2 581.3009033203125 MULTI HCD FTMS 0 0 0 16693 230441.578125 0.1691326437932308 -5 0.1443939208984375 1 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 96.36657018975838 0.004359138328518304 2 [Y{I|L}]S{I|L}D[SG]{M(Oxidation (M))|F}{I|L} 9 4 70.441 0 0 6.0694 0 0 0 162.05580155360283 162.05580155360283 45.76151861349551 0 0 0 0 2.3252574989159953 1.5228787452803376 1.7856668758921828 0 [Y{I|L}]S{I|L}D[SG]{M(Oxidation (M))|F}{I|L} 6.0694 - 1313 NaN NaN 190603.8 NaN 13132 3560 16693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16695 71.454 NaN 599630 35 0 118070 0.261 + 25167 SAKYRPDLL 9 78 531.8027404340687 1061.5909279349373 2 532.3184814453125 MULTI HCD FTMS 0 0 0 16693 42739.40625 0.5044711445582316 2 -0.04911041259765625 2 Unmodified _SAKYRPDLL_ REV__ENSG00000100426|ENST00000216268|ZBED4 12.240655878213236 0.2545997876781172 2 [VP][Q{I|L}][HQ]EV{I|L} 9 -1 + 18.055 0 0 1.7008 1.7008 81.486 0 0 0 0.35212480354062237 1.2325810988190327 0.35212480354062237 4.110367599119163 0 0.3494850021680094 1.6989700043360187 0 0 [VP][Q{I|L}][HQ]EV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H[RH]QK{I|L};[VP][Q{I|L}][HQ]D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H[RH][AG]K{I|L};{[QN]|[E{I|L}]|[KN]}[KS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TK{I|L} 1.7008;1.3136;1.0854;0.4411;0.011618 -;-;-;-;- 267 NaN NaN 179405.5 NaN 13133 3560 16693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16696 71.457 NaN 147100 35 0 8330 0.261 -1 QYVYWLHML 9 50 634.8102300217877 1267.6059071103753 2 634.8115234375 MULTI HCD FTMS 0 0 0 16693 46320.9296875 0.09570839215013746 39 -1.0737838745117188 3 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ ENSG00000135926|ENST00000258412|TMBIM1 26.34127834903884 0.13277353811156473 2 [YQ]VYW{I|L}HEM 9 -1 [YQ] + + 40.846 5.2288 1.7961 3.2223 3.2223 60.239 0 0 0 0 27.870156338638594 0 0 0 0.6109243748081782 0 0 0 [YQ]VYW{I|L}HEM 3.2223 - 122 + NaN NaN 124970.7 NaN 13134 3560 16693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16697 71.461 NaN 206860 35 0 16393 0.264 + 27962 TFDAGLQAF 9 58 485.23751355005396 968.4604741669079 2 485.2373962402344 MULTI HCD FTMS 0 0 0 16693 35233.1171875 0.4283405750169372 5 -0.1277313232421875 4 Unmodified _TFDAGLQAF_ ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1 30.636539890814138 0.10832830463492794 2 QA{M(Oxidation (M))|F} 3 6 43.698 0 0 4.5121 0 0 604.2863600357531 0 604.2863600357531 0 34.745462655597095 0 0 0 1.4247425010840047 0 0 0.3252574989159953 + QA{M(Oxidation (M))|F} 4.5121 + + 64 + NaN NaN 119877.1 NaN 13135 3560 16693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16698 71.464 NaN 55708 35 0 5991.2 0.261 + 20428 PAEHHSDL 8 29 453.2095436155007 NaN 0 453.209716796875 PEAK HCD FTMS 0 0 0 16693 20193.10546875 0.654375592894907 1 -0.02286529541015625 5 Unmodified _PAEHHSDL_ REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF 2.577480529830294 0.38822285293237185 2 P 1 -1 5.4846 0 0 0.60643 0 0 71.94666921789515 732.3839205377561 804.3305897556513 0 0 0 0 0 0 0 0 0 P 0.60643 + + 1 + NaN NaN 94397 NaN 13136 3560 16693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16699 71.467 NaN 142700 35 0 20854 0.261 + 15052 LLSLWYLL 8 52 510.8079523508525 NaN 0 510.8080749511719 PEAK HCD FTMS 0 0 0 16693 34349.12109375 0.6027740407335309 2 -0.04911041259765625 6 Unmodified _LLSLWYLL_ ENSG00000130714|ENST00000402686|POMT1;ENST00000494883.1_1_9:134396759-134397813:+|nuORF;nc|ENSG00000130714|Q9Y6A1-3|POMT1;nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1 14.581692164780916 0.38795613832665576 2 {I|L} 1 7 11.99 0 0 1.1759 0 0 131.09490129979503 772.4008142072632 903.4957155070583 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.1759 + + 4 + NaN NaN 107592.4 NaN 13137 3560 16693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16701 71.472 NaN 1863200 35 0 266990 0.327 -1 0 99 535.8029997198473 1069.5914465064945 2 535.7874145507812 MULTI HCD FTMS 0 0 0 16700 192378.84375 0.07045348569781616 8 -0.21547698974609375 1 NaN NaN 2 W{M(Oxidation (M))|F}{M(Oxidation (M))|F}MDV{I|L} 7 -1 33.513 0 0 3.1332 0 0 113.11814029747843 0 113.11814029747843 0 9.651159619927448 0 0 0 1.3494850021680094 0 0.9604093769761877 0 W{M(Oxidation (M))|F}{M(Oxidation (M))|F}MDV{I|L} 3.1332 - 2486 + NaN NaN 369202.5 NaN 13138 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16702 71.477 NaN 996200 35 0 88685 0.261 + 13187 KYLTEGLLQF 10 91 606.3371186913156 1210.659684449431 2 606.33740234375 MULTI HCD FTMS 0 0 0 16700 246909.34375 0.04053022222984609 -4 0.10480499267578125 2 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 89.60864043982822 0.0010324512941143173 2 [YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F} 10 3 + 99.563 0 0 8.2238 8.2238 88.193 0 0 0 7.146942222687173 82.18067939190304 7.146942222687173 1.020599913279625 0 2.274227503252014 0 1.579689690656103 0.28872548999643577 [YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAEV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}[AG]{M(Oxidation (M))|F};[Y{I|L}]KTEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}[AG]{M(Oxidation (M))|F};[Y{I|L}]KTEG{I|L}{I|L}Q{M(Oxidation (M))|F} 8.2238;8.1395;7.9853;7.901;7.6243;7.54;7.4668;7.3859;7.3825;7.3016 -;-;-;+;-;-;-;-;-;- + 4579 NaN NaN 244508.4 NaN 13139 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16703 71.48 NaN 236460 35 0 53046 0.261 + 13149 KYLNWDAVF 9 58 578.2952728336184 1154.5759927340366 2 578.2955322265625 MULTI HCD FTMS 0 0 0 16700 48068.375 0.293237777716138 -2 0.05242919921875 3 Unmodified _KYLNWDAVF_ ENSG00000149311|ENST00000675843|ATM 27.628801355627647 0.12213550946336599 2 KWWV{M(Oxidation (M))|F} 5 5 45.886 0 0 3.9742 0 0 390.189256736525 0 390.189256736525 0 40.400990676322905 0 0 0 1.305462187404089 0 0 0.4247425010840047 KWWV{M(Oxidation (M))|F} 3.9742 - 62 NaN NaN 125434.7 NaN 13140 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16704 71.484 NaN 210370 35 0 39104 0.264 + 23181 RFLDDLGLKF 10 56 408.56412671113674 1222.6705507336103 3 408.5643005371094 MULTI HCD FTMS 0 0 0 16700 40268.19921875 0.014229062001131273 17 -0.46790313720703125 4 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 12.227587767072771 0.39673928642462597 2 {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 5 5 37.218 0 0 3.044 0 0 646.3070166738764 0 646.3070166738764 0 32.61439372640169 0 0 0 1.5 0 0 0 + {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 3.044 + + 52 NaN NaN 142375.5 NaN 13141 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16705 71.487 NaN 196700 35 0 19066 0.261 + -1 LPCHPLMDIM 10 65 629.7833518880169 1257.5521508428337 2 629.7837524414062 MULTI HCD FTMS 0 0 0 16700 42217.46484375 0.4742009374441125 -1 0.02286529541015625 5 Carbamidomethyl (C),2 Oxidation (M) _LPC(Carbamidomethyl (C))HPLM(Oxidation (M))DIM(Oxidation (M))_ REV__ENSG00000186088|ENST00000257626|GSAP;REV__ENST00000334003.11_1_7:76959552-77026708:-|nuORF;REV__nc|ENSG00000186088|A4D1B5-2|GSAP;REV__nc|ENSG00000186088|A4D1B5-3|GSAP 10.073929032068715 0.4168838835836452 2 {I|L}N[TP]AWN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 24.601 0 0 1.9562 0 0 183.04165340166406 0 183.04165340166406 0 -0.09196252234935898 -0.09196252234935898 0 0 0 0 0 0.3252574989159953 {I|L}N[TP]AWN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.9562 - 102 + NaN NaN 119159.1 NaN 13142 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16706 71.49 NaN 417800 35 0 63928 0.261 + 1469 AYSTVPGYYSW 11 63 647.2928793224678 1292.5712057117355 2 647.7940063476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _AYSTVPGYYSW_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 15.248480904072842 0.3242218977034194 2 Y{[WS]|[C(Carbamidomethyl (C)){I|L}]} 3 8 18.512 0 0 1.4322 0 0 838.3876180528576 0 838.3876180528576 0 14.532796692927267 0 0 0 0.805462187404089 0 0 0 + Y{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.4322 + + 27 NaN NaN 161083.8 NaN 13143 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16707 71.494 NaN 81898 35 0 7543.9 0.264 + 20429 PAEHHSDL 8 54 453.2095436155007 NaN 0 453.209228515625 PEAK HCD FTMS 0 0 0 16700 15337.7255859375 0.4970326772912421 2 -0.0523834228515625 7 Unmodified _PAEHHSDL_ REV__ENST00000585814.1_1_19:3573615-3573789:-|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114437.1 NaN 13144 3561 16700 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16709 71.498 NaN 608080 35 0 76284 0.327 + 24076 RYAGLYFCI 9 92 553.2786530697282 1104.5427532062563 2 553.2911376953125 MULTI HCD FTMS 0 0 0 16708 9911.0576171875 0.05449968703656925 -3 0.07867431640625 1 Unmodified _RYAGLYFCI_ ENSG00000042753|ENST00000263270|AP2S1 15.847184025352803 0.2234401846867398 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T[K{I|L}]{M(Oxidation (M))|F}VG 8 6 46.419 0 0 4.2026 0 0 0 162.0275696782958 162.0275696782958 -3.411290632962718 0 -3.411290632962718 0 0 0 2 1.3539171939081172 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}T[K{I|L}]{M(Oxidation (M))|F}VG 4.2026 - 1140 NaN NaN 179200.2 NaN 13145 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16710 71.503 NaN 475300 35 0 84608 0.261 + 18449 MPVLEQSVL 9 70 508.27818881042964 1014.5418246876593 2 508.27825927734375 MULTI HCD FTMS 0 0 0 16708 121435.5234375 0.26735286632600064 4 -0.114776611328125 2 Unmodified _MPVLEQSVL_ ENSG00000073614|ENST00000399788|KDM5A;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 43.77239144664712 0.04802738721622131 2 {I|L}EQSV{I|L} 6 3 61.675 0 0 6.0791 0 0 327.16075331855626 0 327.16075331855626 0 43.258884703078735 0 0 0 1.805462187404089 0 0.8494850021680094 0 + {I|L}EQSV{I|L} 6.0791 + + 336 NaN NaN 161596.5 NaN 13146 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16711 71.506 NaN 676960 35 0 60527 0.261 + 16025 LPSAFYIKL 9 77 526.3130796283597 1050.6116063235193 2 526.3132934570312 MULTI HCD FTMS 0 0 0 16708 122231.96875 0.0999252851228644 7 -0.18923187255859375 3 Unmodified _LPSAFYIKL_ ENSG00000134294|ENST00000256689|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;nc|ENSG00000134294|Q96QD8-2|SLC38A2 49.55428908609986 0.03219431099695407 2 {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L} 9 0 + 67.749 0 0 6.4485 6.4485 93.437 0 0 0 38.821224933621195 7.262036441594198 7.262036441594198 38.307065798730605 0 1.5994850021680094 1.6989700043360187 0.6505149978319906 0 + + {I|L}PSA{M(Oxidation (M))|F}Y{I|L}K{I|L};[{I|L}P][C(Carbamidomethyl (C))H][RK]K{I|L};[{I|L}P][C(Carbamidomethyl (C))H]KKR{I|L} 6.4485;2.8024;2.0612 +;-;- + 202 + NaN NaN 206492.8 NaN 13147 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16712 71.51 NaN 250080 35 0 13097 0.261 + 4836 EYYRGFTLF 9 81 598.2921811755767 1194.5698094179534 2 598.2931518554688 MULTI HCD FTMS 0 0 0 16708 60431.62109375 0.2013870266645075 4 -0.114776611328125 4 Unmodified _EYYRGFTLF_ ENSG00000179335|ENST00000395066|CLK3;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3 27.628801355627647 0.12213550946336599 2 T{I|L}{M(Oxidation (M))|F} 3 6 35.662 0 0 2.9853 0 0 815.358202049025 0 815.358202049025 0 16.63811573052314 0 0 0 1 0 1 0 + T{I|L}{M(Oxidation (M))|F} 2.9853 + + 151 NaN NaN 144676.9 NaN 13148 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16713 71.513 NaN 279250 35 0 12552 0.261 + 4507 EYISIALRI 9 69 539.318890606339 NaN 0 539.3187255859375 PEAK HCD FTMS 0 0 0 16708 14316.06640625 0.060088023420096705 18 -0.49394989013671875 5 Unmodified _EYISIALRI_ ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST 20.41453444215458 0.1846157837989407 2 TG{I|L} 3 8 7.167 0 0 0.66569 0 0 132.18865156519195 670.2603853815061 802.449036946698 0 0 0 0 0 0 0 0 0 TG{I|L} 0.66569 - 96 + NaN NaN 136622.6 NaN 13149 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16714 71.516 NaN 389960 35 0 39099 0.261 + 10806 ISVPLHELEL 10 78 575.3294467560155 1148.644340578831 2 575.3306274414062 MULTI HCD FTMS 0 0 0 16708 47874.68359375 0.07875511577489788 11 -0.3004150390625 6 Unmodified _ISVPLHELEL_ REV__ENST00000371120.7_1_1:63249823-63269403:+|nuORF 18.1463463914782 0.3413772152514074 2 {I|L}E{I|L} 3 -1 32.976 0 0 2.8709 0 0 775.4249544484397 0 775.4249544484397 0 10.440228147639203 0 0 0 0.805462187404089 0 0.3494850021680094 0 {I|L}E{I|L} 2.8709 + + 417 NaN NaN 157531.6 NaN 13150 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16715 71.52 NaN 169540 35 0 19822 0.261 + 25553 SFNMEPALI 9 55 511.2546005039294 NaN 0 511.25634765625 PEAK HCD FTMS 0 0 0 16708 9682.59375 0.1933028274803474 15 -0.41230010986328125 7 Unmodified _SFNMEPALI_ REV__tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1 7.289230182591677 0.2599242500475609 2 {I|L} 1 -1 6.9897 0 0 0.68493 0 0 131.98834232763403 772.4009245524928 904.3892668801268 0 0 0 0 0 0 0 0 0 {I|L} 0.68493 + + 5 + NaN NaN 117707.4 NaN 13151 3562 16708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16717 71.525 NaN 2912400 35 0 302140 0.327 + 12954 KYIDYIFNV 9 120 587.8103983506529 1173.6062437681057 2 587.8109741210938 MULTI HCD FTMS 0 0 0 16716 1974404.5 1 0 0 1 Unmodified _KYIDYIFNV_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 133.0521902211835 0.0004198702180815479 2 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV 9 2 + 93.119 0 0 7.9344 7.9344 91.961 0 0 0 13.010299956639813 9.827796776480469 9.827796776480469 9.208187539523749 0 2.274227503252014 1.3010299956639813 1.0986198691406328 0.3807196863200844 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}VN;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}NV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]DKY{I|L}{M(Oxidation (M))|F}VN;[Y{I|L}]DYK{I|L}{M(Oxidation (M))|F}NV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}GGV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}VN 7.9344;7.1498;7.097;6.9769;6.8259;6.1923;6.1395;6.0423;6.0413;5.9885 -;-;-;-;+;-;-;-;-;- + 11714 NaN NaN 536019.4 NaN 13152 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16718 71.533 NaN 918480 35 0 137570 0.275 + 1600 AYVLNIVRF 9 86 547.8215331276353 1093.6285133220706 2 547.82177734375 MULTI HCD FTMS 0 0 0 16716 420808.15625 0.196147490101922 7 -0.1992645263671875 2 Unmodified _AYVLNIVRF_ ENSG00000143153|ENST00000367815|ATP1B1;nc|ENSG00000143153|P05026-2|ATP1B1 107.99703571036002 0.003269392969029945 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F} 10 2 + 104.86 0 0 9.5885 9.5885 89.504 0 0 0 24.25968732272281 93.8937472782898 24.25968732272281 0.5115252244738144 0 3.4247425010840047 1.6989700043360187 0 1.2302046884880937 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VR{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N{I|L}AA{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}RV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[R{I|L}]{I|L}VGV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}N[RV]{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}GG{I|L}AA{I|L}{M(Oxidation (M))|F} 9.5885;9.5418;8.5819;7.9633;7.8542;7.6256;7.3918;7.1463;6.7268;6.2797 -;+;-;-;-;-;-;-;-;- + 834 NaN NaN 234143.9 NaN 13153 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16719 71.536 NaN 1165800 35 0 101870 0.261 + 19826 NYAWVYYHL 9 104 614.7931119449629 1227.5716709567257 2 614.7932739257812 MULTI HCD FTMS 0 0 0 16716 427761.9375 0.006733756106964608 93 -2.542327880859375 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 107.18 0 0 8.7308 8.7308 97.228 0 0 0 27.81865655543953 16.478174818886373 16.478174818886373 38.66827851303363 0 2.75 1.6989700043360187 0 2.0114393726401687 + + [YN]AWVYYH{I|L};[YN]AWV[WK]{[{M(Oxidation (M))|F}D]|MM};[YN]AWV[WQ][YV];[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[NS]{M(Oxidation (M))|F}WVYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}W[YG]YYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{[TV]|[{I|L}S]}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}T]{[SA]|[TG]}YYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{[TV]|[{I|L}S]}N{[{M(Oxidation (M))|F}D]|MM};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.7308;5.5808;5.5808;4.2598;4.1829;3.9105;3.3718;3.1231;3.085;3.0649 +;-;-;-;-;-;-;-;-;- + 2170 NaN NaN 266911.4 NaN 13154 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16720 71.539 NaN 1074700 35 0 49925 0.261 + 17490 LYTEAIKFF 9 103 566.3081764059373 1130.6017998786745 2 566.3076782226562 MULTI HCD FTMS 0 0 0 16716 353473.90625 1 0 0 4 Unmodified _LYTEAIKFF_ ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A 122.17920374332846 0.0010792739174387011 2 [Y{I|L}]TEA{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 95.249 0 0 8.4246 8.4246 96.127 0 0 0 22.632192780232785 61.26972515042212 22.632192780232785 26.760912590556813 0 2.3494850021680094 1.6989700043360187 1.872363747448347 0 + + [Y{I|L}]TEA{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{I|L}EA{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[Y{I|L}]A{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]PDA{I|L}[VP]P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[HV]H{I|L}K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]P[W{I|L}][RH]{M(Oxidation (M))|F};[DP][Y{I|L}]A{I|L}[VP]P{M(Oxidation (M))|F};[DP]A[Y{I|L}]{I|L}[VP]P{M(Oxidation (M))|F};[Y{I|L}]P{[QV]|[N{I|L}]|[RA]|[KV]}[RP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}{[C(Carbamidomethyl (C))G]|[NC]}K{I|L}A{[{M(Oxidation (M))|F}H]|[RQ]}W 8.4246;6.0577;4.3661;4.1817;3.5419;2.9058;1.1108;0.7853;0.7755;0.38461 +;-;-;-;-;-;-;-;-;- + 1856 NaN NaN 254499.5 NaN 13155 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16721 71.543 NaN 695790 35 0 141790 0.261 + 28560 TPTPSQQLQ 9 81 500.25901762622726 998.5034823192545 2 502.2774963378906 MULTI HCD FTMS 0 0 0 16716 27444.3046875 0.7595826228877589 2 -0.05248260498046875 5 Unmodified _TPTPSQQLQ_ REV__ENSG00000140326|ENST00000356231|CDAN1;REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 13.90604991867851 0.24021115267848145 2 AQ[DN]{I|L}Q[{I|L}A] 8 -1 20.463 0 0 2.0494 0 0 127.05690038747157 0 127.05690038747157 0 0.17275462797695695 0 0 0 0 0 0.75 0.5752574989159953 AQ[DN]{I|L}Q[{I|L}A] 2.0494 - 650 + NaN NaN 198769.8 NaN 13156 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16722 71.546 NaN 636920 35 0 59478 0.261 + 34324 YPDYYKIIL 9 86 594.32126796117 1186.6279829891398 2 594.32177734375 MULTI HCD FTMS 0 0 0 16716 357457.75 1 0 0 6 Unmodified _YPDYYKIIL_ ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant 59.368380827593164 0.01846506874148156 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DYYK{I|L}{I|L}{I|L} 9 0 + 90.429 0 0 7.6206 7.6206 94.359 0 0 0 20.651668842475033 14.973024840566467 14.973024840566467 20.651668842475033 0 2.1549471895720984 1.5228787452803376 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DYYK{I|L}{I|L}{I|L};YPDYYK{I|L}{I|L}{I|L};[DP]YYYK{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DY[K{I|L}]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DY[K{I|L}]{I|L}Y{I|L};[DP]YY[K{I|L}]Y{I|L}{I|L};{I|L}{I|L}KYYDPY{I|L};[Y{I|L}]KDYPY{I|L}{I|L};[DP]YY[K{I|L}]{I|L}Y{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y[VG]{I|L}{I|L}{I|L} 7.6206;5.8803;5.3236;5.3175;4.1314;3.0205;2.9469;2.0024;1.8343;1.4519 +;+;-;-;-;-;-;-;-;- + 697 NaN NaN 199680.5 NaN 13157 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16723 71.549 NaN 551210 35 0 44126 0.261 + 6451 FPIEAGDMF 9 65 521.731240149677 1041.4479273661539 2 521.7314453125 MULTI HCD FTMS 0 0 0 16716 160338.109375 0.7559289693486613 10 -0.2742767333984375 7 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 54.773552608820026 0.024892918755467567 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 3 + 44.792 0 0 4.3009 4.3009 82.169 0 0 0 0.7133375178436552 32.48441900057003 0.7133375178436552 1.8765315847925024 0 1.6989700043360187 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ENE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EA[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EGGE{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}PE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.3009;4.1207;3.4115;2.5562 -;+;-;- + 291 NaN NaN 177860.5 NaN 13158 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16724 71.553 NaN 317380 35 0 26815 0.261 -1 TLLMDEPLL 9 57 530.7832628784496 1059.551972823699 2 530.765380859375 MULTI HCD FTMS 0 0 0 16716 10215.3125 0.15715184456250422 -7 0.18679046630859375 8 Oxidation (M) _TLLM(Oxidation (M))DEPLL_ ENSG00000176177|ENST00000325157|ENTHD1 15.847184025352803 0.2234401846867398 2 [YT]D{I|L}PEP{I|L}{I|L} 9 -1 + 46.379 0 0 4.3772 4.3772 89.231 0 0 0 5.6424927368725974 30.181146847855086 5.6424927368725974 23.526909627198403 0 1.024227503252014 0 0.805462187404089 0 [YT]D{I|L}PEP{I|L}{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}PEP{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}[{I|L}T]EP{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}P{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}P{I|L}{I|L} 4.3772;2.1568;1.7559;1.6583;1.4489 -;-;-;-;- 89 NaN NaN 136864.6 NaN 13159 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16725 71.556 NaN 602210 35 0 163110 0.261 + 1470 AYSTVPGYYSW 11 72 647.2928793224678 1292.5712057117355 2 647.2936401367188 MULTI HCD FTMS 0 0 0 16716 179419.71875 0.5559382891884075 -5 0.13103485107421875 9 Unmodified _AYSTVPGYYSW_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 34.93206674587334 0.1695891461859059 2 NYSW 4 8 37.907 0 0 2.9327 0 0 724.328905174025 0 724.328905174025 0 27.422750325201406 0 0 0 1.1989700043360187 0 0 0 NYSW 2.9327 - 467 NaN NaN 195428.2 NaN 13160 3563 16716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16727 71.561 NaN 367540 35 0 76817 0.326 + 873 AYAENIALL 9 57 489.2688059296335 976.523058926067 2 489.2688293457031 MULTI HCD FTMS 0 0 0 16726 251221.203125 0.14535164412276663 6 -0.16300201416015625 1 Unmodified _AYAENIALL_ ENSG00000196455|ENST00000356763|PIK3R4 69.10491478415734 0.009377850133389008 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}N{I|L}A{I|L}{I|L} 9 0 + 78.355 0 0 8.0239 8.0239 95.156 0 0 0 11.935749724493121 64.5480500311816 11.935749724493121 21.95046257204389 0 2.2302046884880937 1.2218487496163564 0 1.274227503252014 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}N{I|L}A{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CP]|[EA]}GG{I|L}A{I|L}{I|L} 8.0239;5.7761 +;- + 103 NaN NaN 147669.3 NaN 13161 3564 16726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16728 71.565 NaN 791710 35 0 106010 0.261 + 6767 FPQKWPDLL 9 100 572.3134703925194 1142.6123878518388 2 572.3135986328125 MULTI HCD FTMS 0 0 0 16726 452388.9375 0.4666954575837642 9 -0.23801422119140625 2 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 96.36657018975838 0.004359138328518304 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L} 9 0 + 78.048 0 0 6.8307 6.8307 86.765 0 0 0 10.34465464368084 3.3855407413631866 3.3855407413631866 3.3855407413631866 0 2.1307196863200843 1.6989700043360187 0.7742275032520141 0.25 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}VPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPD{I|L}{I|L};{M(Oxidation (M))|F}PQKWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKWPV{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KW{I|L}VPE;{M(Oxidation (M))|F}P[AG]KWPD{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKW{I|L}[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KWPV{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKAAKQPE 6.8307;6.5344;6.0248;5.9253;5.8662;5.7285;5.1194;5.0848;5.0603;4.5952 +;-;-;+;-;-;-;-;-;- + 2425 NaN NaN 214623.2 NaN 13162 3564 16726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16729 71.569 NaN 531410 35 0 80311 0.261 + 16280 LQNHVFPLF 9 70 557.8055004243414 1113.5964479154827 2 557.8059692382812 MULTI HCD FTMS 0 0 0 16726 265876.21875 0.8231189525269191 1 -0.0162200927734375 3 Unmodified _LQNHVFPLF_ ENSG00000205339|ENST00000379719|IPO7 42.09456458481378 0.05572955244001856 2 [Y{M(Oxidation (M))|F}]V{I|L}{[ES]|[DT]|[{I|L}C]}P{I|L}{M(Oxidation (M))|F} 9 6 + 56.488 0 0 5.0726 5.0726 85.28 0 0 0 6.395067726032551 32.67606240177031 6.395067726032551 6.817496819840656 0 1.7614393726401687 0 0 0 [Y{M(Oxidation (M))|F}]V{I|L}{[ES]|[DT]|[{I|L}C]}P{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V{I|L}{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]V{I|L}{[CP]|[EA]}{I|L}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V{I|L}{[ES]|[DT]|[{I|L}C]}M{I|L}{I|L};[Y{M(Oxidation (M))|F}]V{I|L}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]{[ES]|[DT]|[{I|L}C]}P{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]V{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]{[CP]|[EA]}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]{[ES]|[DT]|[{I|L}C]}M{I|L}{I|L} 5.0726;4.4604;4.083;3.8482;3.4708;3.1706;2.8586;2.5584;2.1809;1.9462 -;-;-;-;-;-;-;-;-;- 403 NaN NaN 174369.7 NaN 13163 3564 16726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16730 71.572 NaN 177990 35 0 52025 0.261 -1 LFMMHCVEVL 10 40 639.8052086476713 1277.5958643621425 2 639.8052368164062 MULTI HCD FTMS 0 0 0 16726 72630.734375 0.4413516714020241 9 -0.23801422119140625 4 Carbamidomethyl (C) _LFMMHC(Carbamidomethyl (C))VEVL_ ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP 3.5964929083625545 0.45626689593999237 2 V{I|L} 2 -1 25.969 0 0 2.0327 0 0 1047.432462154537 0 1047.432462154537 0 24.186363512511498 0 0 0 0.5 0 0 0 V{I|L} 2.0327 + + 5 NaN NaN 120903.8 NaN 13164 3564 16726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16732 71.577 NaN 2303100 35 0 430660 0.326 + 25874 SMTRYFYLF 9 107 622.2945419389652 1242.5745309447302 2 622.2945556640625 MULTI HCD FTMS 0 0 0 16731 1845815 0.9307396156948462 2 -0.05573272705078125 1 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 63.960520009940105 0.0120409805053046 2 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 4 56.013 0 0 4.5079 0 0 491.21598681237714 0 491.21598681237714 0 17.842640688501483 0 0 0 1.805462187404089 0 0 0 + Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.5079 + + 4848 NaN NaN 453470.1 NaN 13165 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16733 71.581 NaN 2102800 35 0 346560 0.261 + 11538 IYSIDFTRF 9 113 581.3006497563529 1160.5867465795056 2 581.301025390625 MULTI HCD FTMS 0 0 0 16731 1362490.25 1 0 0 2 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 149.91393105778798 8.917243180786556E-06 2 {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F} 9 0 + 113.04 0 0 9.7403 9.7403 98.121 0 0 0 73.46959652336412 16.478174818886373 16.478174818886373 37.63045687232909 0 2.6237125054200234 1.6989700043360187 1.8169015600442577 0.3054621874040891 + + {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};[YT]V{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[R{M(Oxidation (M))|F}]C{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[R{M(Oxidation (M))|F}]C{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}D[{I|L}P]{[HG]|PP}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DH[EP]{I|L};QQ[KG]QD{I|L}{I|L}[MT];{[TV]|[{I|L}S]}D[{I|L}P]{[HG]|PP}{I|L}Y{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}S[{I|L}P]{[HG]|PP}Y{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}D[{I|L}P][RN]S{I|L}{M(Oxidation (M))|F} 9.7403;6.4979;3.9855;3.1781;2.8656;2.8506;2.3953;2.3415;2.3028;2.1975 +;-;-;-;-;-;-;-;-;- + 6623 + NaN NaN 420768.6 NaN 13166 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16734 71.585 NaN 1860200 35 0 277670 0.262 + 18122 MPDFDLHL 8 89 494.2338834211016 986.4532139090032 2 494.23394775390625 MULTI HCD FTMS 0 0 0 16731 1587327.875 1 0 0 3 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 129.2004930540761 0.03681736901630326 2 MPD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 84.206 0 0 8.5362 8.5362 95.911 0 0 0 32.60976157618046 8.979400086720375 8.979400086720375 22.35502013255578 0 2.0356668758921828 1.5228787452803376 0.6505149978319906 0 + + MPD{M(Oxidation (M))|F}D{I|L}H{I|L};[DP]{M(Oxidation (M))|F}DM{I|L}H{I|L};MPTK[NS]Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PDM{I|L}H{I|L};[DP]{M(Oxidation (M))|F}D{I|L}MH{I|L};[DP]{M(Oxidation (M))|F}D{I|L}HM{I|L};[DP]{M(Oxidation (M))|F}VEMH{I|L};[DP]{M(Oxidation (M))|F}D{I|L}H{I|L}M;{[{M(Oxidation (M))|F}D]|MM}PD{I|L}MH{I|L};[DP]{M(Oxidation (M))|F}VEHM{I|L} 8.5362;6.27;5.491;5.0099;4.6687;4.1069;3.8049;3.4108;3.4086;3.2432 +;-;-;-;-;-;-;-;-;- + 1007 + NaN NaN 380876.5 NaN 13167 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16735 71.588 NaN 651750 35 0 103650 0.261 -1 MPDLDLNL 8 68 473.73125633104536 945.4479597288907 2 473.7310485839844 MULTI HCD FTMS 0 0 0 16731 637318.375 0.8339076123605935 -7 0.1835174560546875 4 Oxidation (M) _M(Oxidation (M))PDLDLNL_ ENSG00000124942|ENST00000378024|AHNAK 89.42679046578446 0.023235607516423472 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}N{I|L} 8 -1 + 53.765 0 0 5.6867 5.6867 89.416 0 0 0 2.0027794246334096 39.16086761068236 2.0027794246334096 11.791294632377571 0 0.8494850021680094 0 1.4559771852360797 0.4247425010840047 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}D{I|L}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{I|L}GG{I|L} 5.6867;4.4396;4.2578;3.4599 +;-;-;- + 120 NaN NaN 189703.1 NaN 13168 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16736 71.592 NaN 561170 35 0 59003 0.261 + 26752 SYEYRFLEF 9 74 627.2955431595194 1252.5765333858387 2 627.2955322265625 MULTI HCD FTMS 0 0 0 16731 281103.15625 0.33564027461955637 -5 0.1277313232421875 5 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 75.5705956163825 0.007285660612518157 2 {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 9 0 + 71.648 0 0 5.7201 5.7201 92.195 0 0 0 3.903018563800984 46.978662999311425 3.903018563800984 36.550697163554986 0 2.579689690656103 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[NP]GHHR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};DD[KG][WP]{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 5.7201;2.802;1.829 +;-;- + 507 NaN NaN 182085.8 NaN 13169 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16737 71.595 NaN 213860 35 0 39633 0.263 + -1 HCHTLLVL 8 43 496.77027539055075 NaN 0 496.7703552246094 PEAK HCD FTMS 0 0 0 16731 171768.890625 1 0 0 6 Carbamidomethyl (C) _HC(Carbamidomethyl (C))HTLLVL_ REV__ENSG00000130766|ENST00000253063|SESN2;REV__SESN2|p.A197V|1|0.19|ENSG00000130766|chr1:28272633-28272633|C/T|missense_variant 24.67388899826682 0.38182156912090326 2 V{I|L}{I|L} 3 -1 19.425 0 0 1.9591 0 0 131.09566976737318 532.1733492486936 663.2690190160667 0 0 0 0 0 0.9247425010840047 0 0 0 V{I|L}{I|L} 1.9591 - 21 + NaN NaN 111784.1 NaN 13170 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16738 71.598 NaN 278700 35 0 35420 0.261 + 33836 YLKEPTQF 8 48 513.267896514424 1024.521240095648 2 513.7808227539062 MULTI HCD FTMS 0 0 0 16731 40596.4453125 0.48276626772963577 -7 0.1835174560546875 7 Unmodified _YLKEPTQF_ REV__ENSG00000101049|ENST00000373100|SGK2;REV__nc|ENSG00000101049|Q9HBY8-1|SGK2;REV__nc|ENSG00000101049|Q9HBY8-3|SGK2 12.531546534597751 0.5015908124873912 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6583 0 0 859.4423501804121 0 859.4423501804121 0 8.31756235207578 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6583 + + 18 + NaN NaN 139747.8 NaN 13171 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16739 71.602 NaN 131460 35 0 12024 0.261 + 35139 YVFQEIKEF 9 42 601.8087297334955 1201.602906533791 2 601.8086547851562 MULTI HCD FTMS 0 0 0 16731 89540.8671875 0.982401894649142 1 -0.03615570068359375 8 Unmodified _YVFQEIKEF_ REV__ENSG00000031698|ENST00000234677|SARS1 10.823927491677226 0.26684000660059787 2 P{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.0986 0 0 939.4706359252209 0 939.4706359252209 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 P{M(Oxidation (M))|F} 2.0986 - 8 NaN NaN 112144.7 NaN 13172 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16740 71.605 NaN 304910 35 0 25141 0.261 -1 LEPGMELGIT 10 68 538.2701807325852 1074.5258085319704 2 538.2703247070312 MULTI HCD FTMS 0 0 0 16731 147104.9375 1 0 0 9 Oxidation (M) _LEPGM(Oxidation (M))ELGIT_ ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;nc|ENSG00000100342|O14791-3|APOL1 24.020572477871973 0.2864316864133941 2 {I|L}GT{I|L} 4 -1 33.22 0 0 3.0916 0 0 672.2793182784908 0 672.2793182784908 0 19.48584086510941 0 0 0 0.7302046884880937 0 0 0 {I|L}GT{I|L} 3.0916 - 95 NaN NaN 146111.2 NaN 13173 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16741 71.608 NaN 193740 35 0 11226 0.261 + 16916 LYGHDVNFYL 10 74 620.8042753153898 1239.5939976975794 2 620.80810546875 MULTI HCD FTMS 0 0 0 16731 71911.109375 0.06579581595480462 27 -0.7527008056640625 10 Unmodified _LYGHDVNFYL_ REV__ENSG00000147614|ENST00000285393|ATP6V0D2 22.736283301280096 0.29844449404982915 2 R{M(Oxidation (M))|F}[MT]N{M(Oxidation (M))|F}{I|L} 7 -1 33.588 0 0 2.7096 0 0 312.11238295722814 0 312.11238295722814 0 15.400538380459352 0 0 0 0.5 0 0.9247425010840047 0 R{M(Oxidation (M))|F}[MT]N{M(Oxidation (M))|F}{I|L} 2.7096 - 433 NaN NaN 127486.5 NaN 13174 3565 16731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16743 71.613 NaN 436180 35 0 32775 0.327 + 24077 RYAGLYFCI 9 79 553.2786530697282 1104.5427532062563 2 553.2789306640625 MULTI HCD FTMS 0 0 0 16742 101407.4921875 0.5576273290751405 1 -0.0195770263671875 1 Unmodified _RYAGLYFCI_ ENSG00000042753|ENST00000263270|AP2S1 15.847184025352803 0.2234401846867398 2 Y{M(Oxidation (M))|F}C{I|L} 4 5 39.993 0 0 3.6208 0 0 560.3058169485289 0 560.3058169485289 0 4.919759298829831 0 0 0 0.805462187404089 0 0 0 + Y{M(Oxidation (M))|F}C{I|L} 3.6208 + + 195 NaN NaN 154413.4 NaN 13175 3566 16742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16744 71.618 NaN 208030 35 0 33587 0.263 + 14730 LHNTLVGP 8 40 425.74204658384787 NaN 0 425.74188232421875 PEAK HCD FTMS 0 0 0 16742 77113.6640625 0.3627890242245788 -6 0.16388702392578125 2 Unmodified _LHNTLVGP_ REV__ENSG00000142611|ENST00000270722|PRDM16;REV__nc|ENSG00000142611|Q9HAZ2-2|PRDM16;REV__nc|ENSG00000142611|Q9HAZ2-3|PRDM16;REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16 4.75600775471527 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.36481 0 0 229.169016408127 470.19965540103755 699.3686718091645 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.36481 - 3 + NaN NaN 125284.3 NaN 13176 3566 16742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16745 71.621 NaN 728990 35 0 51510 0.261 + 19372 NPDWGTFEEV 10 94 597.2590035398548 1192.5034541465095 2 597.259033203125 MULTI HCD FTMS 0 0 0 16742 57453.08203125 0.4402896657939098 1 -0.0195770263671875 3 Unmodified _NPDWGTFEEV_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 28.233623360808718 0.24751404419789966 2 EE{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 8 9 47.921 0 0 4.0185 0 0 117.08076996730149 0 117.08076996730149 0 9.810494115932933 0 0 0 0.7764209843288903 0 1.1307196863200843 0 EE{M(Oxidation (M))|F}EN{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 4.0185 - 4107 + NaN NaN 220292.9 NaN 13177 3566 16742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16746 71.625 NaN 333980 35 0 21528 0.261 + 34456 YPEVEIFRTL 10 72 633.8399620266161 1265.6653711200322 2 633.838623046875 MULTI HCD FTMS 0 0 0 16742 74033.46875 0.36956235862011516 -4 0.114776611328125 4 Unmodified _YPEVEIFRTL_ ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant 59.012897905743536 0.04501161496281133 2 YPEVE{I|L}{M(Oxidation (M))|F} 7 3 87.497 0 0 6.9132 0 0 0 385.2209871881469 385.2209871881469 52.88319162249181 0 0 0 0 2.004432191740108 1.5228787452803376 0.3252574989159953 0 + YPEVE{I|L}{M(Oxidation (M))|F} 6.9132 + + 278 + NaN NaN 159505.3 NaN 13178 3566 16742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16747 71.628 NaN 153770 35 0 16084 0.264 + 5650 FNGKSWNHLF 10 44 417.20968969135737 NaN 0 417.2096862792969 PEAK HCD FTMS 0 0 0 16742 22368.037109375 0.2700475069374484 1 -0.0195770263671875 5 Unmodified _FNGKSWNHLF_ REV__ENSG00000158481|ENST00000368170|CD1C 5.731851221503515 0.33527861879838866 2 T 1 -1 1.1092 0 0 0.13326 0 0 581.400689341896 146.93293176822502 728.333621110121 0 0 0 0 0 0 0 0 0 T 0.13326 - 1 + NaN NaN 130792.1 NaN 13179 3566 16742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16749 71.633 NaN 8903400 35 0 1667000 0.327 + 6153 FPEHIFPAL 9 107 535.7874179887401 1069.5602830442801 2 535.7874755859375 MULTI HCD FTMS 0 0 0 16748 6046847 0.3777374633840886 -5 0.1343536376953125 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 146.00731375242447 1.3047045798573153E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 93.755 0 0 8.7657 8.7657 94.159 0 0 0 19.621892823592972 55.33240657858421 19.621892823592972 10.623343384664864 0 2.363982988912431 1.3979400086720375 1.2312958898387063 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{M(Oxidation (M))|F}{I|L}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}{I|L}AP;[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F} 8.7657;7.7725;7.7312;7.1521;7.11;6.7593;6.7433;6.6801;6.6639;6.5471 +;-;-;-;-;-;-;-;-;- + 5859 NaN NaN 1074815.5 NaN 13180 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16750 71.637 NaN 7008200 35 0 671520 0.212 + 13188 KYLTEGLLQF 10 118 606.3371186913156 1210.659684449431 2 606.3375854492188 MULTI HCD FTMS 0 0 0 16748 4198665 0.6892117687169411 2 -0.05487823486328125 2 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 173.13854504802939 2.1348731305651857E-11 2 [YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F} 10 3 + 110.72 0 0 9.1451 9.1451 90.007 0 0 0 7.939979950997426 7.939979950997426 7.939979950997426 2.5134875797167666 0 2.274227503252014 0 2.0233623702246373 0.9604093769761877 [YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};KY{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};KY{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};KY{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}[AG]{M(Oxidation (M))|F};[K{I|L}]YTAEV{I|L}Q{M(Oxidation (M))|F};KY{I|L}TAEV{I|L}Q{M(Oxidation (M))|F} 9.1451;8.9375;8.8833;8.6757;8.4893;8.4435;8.4045;8.3881;8.3715;8.3587 -;-;-;+;+;-;-;-;-;- + 13833 NaN NaN 813184.4 NaN 13181 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16751 71.64 NaN 3533700 35 0 874900 0.261 + -1 ATHMHLHLLF 10 88 618.3213275062147 1234.6281020792294 2 618.3211059570312 MULTI HCD FTMS 0 0 0 16748 1321896.25 0.1840001728790854 -5 0.1343536376953125 3 Oxidation (M) _ATHM(Oxidation (M))HLHLLF_ REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|0|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|3 10.073929032068715 0.4168838835836452 2 YYPEYK{I|L} 7 -1 78.008 0 0 6.3183 0 0 0 275.1401461236938 275.1401461236938 38.57840941039747 0 0 0 0 2.579689690656103 2 0.3494850021680094 0 YYPEYK{I|L} 6.3183 - 752 + NaN NaN 632660.7 NaN 13182 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16752 71.643 NaN 1188100 35 0 119570 0.261 + 13281 KYMDINFDF 9 101 596.7711176425278 1191.5276823518554 2 596.7709350585938 MULTI HCD FTMS 0 0 0 16748 326399.1875 0.0992939170384177 -5 0.1343536376953125 4 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 107.5634045930896 0.0033401844687379516 2 [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 90.077 0 0 7.5598 7.5598 90.349 0 0 0 3.2568864632742844 47.662326625411765 3.2568864632742844 9.061734207603749 0 2.6549471895720984 0 0.5387254899964358 1.1307196863200843 + + [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}PPD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GV{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}PPD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YQ]V{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YG]AV{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YQ]V{M(Oxidation (M))|F}{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.5598;6.7992;6.787;6.7072;6.3549;6.0264;5.938;5.6175;5.3265;4.8447 +;-;-;-;-;-;-;-;-;- + 5339 NaN NaN 263681.4 NaN 13183 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16753 71.647 NaN 805660 35 0 66487 0.261 + 20719 PFVDHVFTF 9 102 554.776742126838 1107.538931320476 2 554.7769165039062 MULTI HCD FTMS 0 0 0 16748 238895.203125 0.07362904658717971 -5 0.1343536376953125 5 Unmodified _PFVDHVFTF_ ENSG00000113460|ENST00000336767|BRIX1 196.64828556020333 2.142729284121474E-17 2 P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 110.18 0 0 9.9477 9.9477 92.574 0 0 0 60.74662239119597 16.478174818886373 16.478174818886373 7.476825674611121 0 3.1989700043360187 0 2.385151878060192 0 + + P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDH[Y{I|L}]A{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDH[{M(Oxidation (M))|F}T]V{M(Oxidation (M))|F};P[C(Carbamidomethyl (C))R]V{I|L}{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};P{M(Oxidation (M))|F}VD{[TV]|[{I|L}S]}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F};P[C(Carbamidomethyl (C))R]{I|L}V{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[RD]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][RD]{I|L}{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}V[HD]VP{M(Oxidation (M))|F} 9.9477;9.2727;5.6012;5.555;5.0905;4.4686;3.9814;3.7367;3.6843;3.3503 +;+;-;-;-;-;-;-;-;- + 1467 + NaN NaN 218562.8 NaN 13184 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16754 71.65 NaN 530540 35 0 41494 0.261 + 11623 IYTVLFERL 9 93 577.3344582154969 1152.6543634977936 2 577.3344116210938 MULTI HCD FTMS 0 0 0 16748 133491.71875 0.3624774699743204 -3 0.07195281982421875 6 Unmodified _IYTVLFERL_ ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF;nc|ENSG00000108528|Q02978-2|SLC25A11 100.0907132914201 0.004261551473353346 2 [Y{I|L}]TV{I|L}{M(Oxidation (M))|F}ER{I|L} 9 0 + 102.89 0 0 8.9264 8.9264 94.19 0 0 0 24.13734275855269 96.69260654009378 24.13734275855269 9.815534464597704 0 2.805462187404089 1.6989700043360187 2.004432191740108 0 + + [Y{I|L}]TV{I|L}{M(Oxidation (M))|F}ER{I|L};[Y{I|L}]TV{I|L}E{M(Oxidation (M))|F}R{I|L};[Y{I|L}]TV[TP][H{I|L}]P{I|L} 8.9264;8.0748;4.5239 +;-;- + 800 NaN NaN 164787.8 NaN 13185 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16755 71.653 NaN 393960 35 0 36312 0.261 + 3142 EARLCRCLLF 10 73 612.3227685520885 NaN 0 612.3421020507812 PEAK HCD FTMS 0 0 0 16748 13891.69921875 0.1545495593765998 14 -0.38574981689453125 7 Unmodified _EARLCRCLLF_ REV__ENST00000481948.1_1_16:88104968-88110264:+|nuORF 12.240655878213236 0.32970798410958835 2 Q{I|L}G{I|L}D 5 -1 18.047 0 0 1.4761 0 0 165.05757216101443 528.2573107123196 693.314882873334 0 0 0 0 0 0 0 0 0 Q{I|L}G{I|L}D 1.4761 - 152 + NaN NaN 145270.8 NaN 13186 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16756 71.657 NaN 115700 35 0 11641 0.264 + 30119 VGAQRGRV 8 52 421.7513645021715 NaN 0 421.7509460449219 PEAK HCD FTMS 0 0 0 16748 47635.7734375 0.45203530386086216 4 -0.10720062255859375 8 Unmodified _VGAQRGRV_ REV__ENSG00000197561|ENST00000263621|ELANE 2.577480529830294 0.38822285293237185 2 N 1 -1 3.0989 0 0 0.36827 0 0 592.3544002916493 132.07053552799064 724.4249358196399 0 0 0 0 0 0 0 0 0 N 0.36827 - 10 + NaN NaN 109923.4 NaN 13187 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16757 71.66 NaN 225830 35 0 38563 0.261 + 23182 RFLDDLGLKF 10 54 408.56412671113674 1222.6705507336103 3 408.89862060546875 MULTI HCD FTMS 0 0 0 16748 20077.53515625 0.011275812277219383 23 -0.638153076171875 9 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 16.274544907608252 0.35888541478244573 2 {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 5 5 36.466 0 0 2.9825 0 0 646.3076417744535 0 646.3076417744535 0 32.48651242028323 0 0 0 1.4247425010840047 0 0 0 + {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 2.9825 + + 36 NaN NaN 119874.4 NaN 13188 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16758 71.663 NaN 169960 35 0 14986 0.261 + 18964 NAILVDTPL 9 57 478.2766785912018 954.5388042492036 2 478.27716064453125 MULTI HCD FTMS 0 0 0 16748 70033.609375 0.8176028971572474 -3 0.07195281982421875 10 Unmodified _NAILVDTPL_ ENSG00000159720|ENST00000290949|ATP6V0D1 38.175570920033316 0.07371992880350783 2 {I|L}VDT[{I|L}P] 6 3 48.689 0 0 5.1008 0 0 298.1648551298661 0 298.1648551298661 0 43.20493438421167 0 0 0 2.1861818737241734 0 0.3807196863200844 0 + {I|L}VDT[{I|L}P] 5.1008 + + 44 + NaN NaN 119271.1 NaN 13189 3567 16748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16760 71.668 NaN 2078100 35 0 209910 0.327 + 6768 FPQKWPDLL 9 112 572.3134703925194 1142.6123878518388 2 572.3262939453125 MULTI HCD FTMS 0 0 0 16759 216061.53125 0.2228943434165375 13 -0.35041046142578125 1 Unmodified _FPQKWPDLL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 39.94969957227396 0.06557568441294001 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 8 6 62.366 0 0 5.4582 0 0 0 128.04702801601277 128.04702801601277 -0.7289185172736268 0 -0.7289185172736268 0 0 0 2 1.201163485412895 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 5.4582 - 3208 NaN NaN 406235.8 NaN 13190 3568 16759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16761 71.673 NaN 299630 35 0 39876 0.261 -1 PYMANVYLI 9 45 550.2785706500007 1098.5425883668013 2 550.2783203125 MULTI HCD FTMS 0 0 0 16759 154891.625 0.989206808548855 -2 0.0549163818359375 2 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 36.04419817259434 0.08350412372117409 2 VY{I|L}{I|L} 4 -1 46.186 0 0 4.2043 0 0 592.2328968732437 0 592.2328968732437 0 30.70107520596089 0 0 0 1.4247425010840047 0 0 0 VY{I|L}{I|L} 4.2043 + + 27 NaN NaN 131545.8 NaN 13191 3568 16759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16762 71.676 NaN 344800 35 0 52304 0.261 + 3387 EESSKETKL 9 58 525.7681579729954 1049.5217630127906 2 525.7685546875 MULTI HCD FTMS 0 0 0 16759 68998.5703125 0.72574008204517 1 -0.01953887939453125 3 Unmodified _EESSKETKL_ REV__ENSG00000114857|ENST00000232978|NKTR 6.2057823575117 0.30397260197431997 2 V{I|L} 2 -1 20.969 0 0 1.998 0 0 819.3585717036789 0 819.3585717036789 0 6.365006360318688 0 0 0 0 0 0 0 V{I|L} 1.998 - 52 NaN NaN 146041.7 NaN 13192 3568 16759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16763 71.679 NaN 686110 35 0 78504 0.261 + 14543 LFFSGQEL 8 71 470.7424453859744 939.4703378387488 2 470.741943359375 MULTI HCD FTMS 0 0 0 16759 119622.5234375 0.3686387434050772 -9 0.2483673095703125 4 Unmodified _LFFSGQEL_ ENST00000606230.2_1_9:14322132-14322207:-|nuORF 14.838274106304384 0.4846187982323419 2 WE{I|L} 3 6 20.177 0 0 2.1477 0 0 493.25332622668714 0 493.25332622668714 0 6.682437647924218 0 0 0 0 0 0 0 WE{I|L} 2.1477 - 154 NaN NaN 203948.6 NaN 13193 3568 16759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16764 71.683 NaN 105850 35 0 9300.2 0.261 + 10386 IMQATFEE 8 46 484.72224484292786 NaN 0 484.7223815917969 PEAK HCD FTMS 0 0 0 16759 35931.5234375 0.2728566746860321 -4 0.10729217529296875 5 Unmodified _IMQATFEE_ REV__ENSG00000142208|ENST00000649815|AKT1;REV__ENST00000554585.5_1_14:105236680-105238139:-|nuORF;REV__ENST00000557552.1_1_14:105236680-105237484:-|nuORF;REV__nc|ENSG00000142208|P31749-2|AKT1 12.531546534597751 0.38822285293237185 2 MD{NN|[MP]|[D{I|L}]|[EV]}{I|L} 5 -1 13.544 0 0 1.4 0 0 113.06672328642487 264.09552942447505 377.1622527108999 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0.4247425010840047 MD{NN|[MP]|[D{I|L}]|[EV]}{I|L} 1.4 - 25 + NaN NaN 116852.7 NaN 13194 3568 16759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16766 71.688 NaN 1858900 35 0 629060 0.327 + 17242 LYPEGLAQL 9 83 502.27731710379317 1002.5400812743864 2 502.2769470214844 MULTI HCD FTMS 0 0 0 16765 718379.4375 0.66003506077235 -3 0.07445526123046875 1 Unmodified _LYPEGLAQL_ ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF 74.92900055777586 0.007493270374442853 2 [Y{I|L}][TP][TP]AGA{I|L} 10 5 + 63.79 0 0 6.3629 6.3629 84.965 0 0 0 6.331721486966373 21.66264035428867 6.331721486966373 1.021825181113627 0 1.6861818737241734 1.5228787452803376 0.805462187404089 0 [Y{I|L}][TP][TP]AGA{I|L};[Y{I|L}][TP][TP]QA{I|L};[Y{I|L}][TP][QP]TA{I|L};[Y{I|L}][TP][TP]AQ{I|L};{[QN]|[E{I|L}]|[KN]}ASW{I|L}TA{I|L};[QA]{I|L}G{I|L}[EP]Y{I|L};[QA]{I|L}G[EP]{I|L}Y{I|L};[QA]{I|L}G[EP]Y{I|L}{I|L};[TP][Y{I|L}][TP]AGA{I|L};[TP][Y{I|L}][TP]QA{I|L} 6.3629;6.261;5.4861;5.3513;5.2172;4.2398;4.0641;3.8429;3.3064;3.2044 -;-;-;-;-;-;-;-;-;- 1303 NaN NaN 375956.2 NaN 13195 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16767 71.692 NaN 1051200 35 0 88690 0.261 + 19827 NYAWVYYHL 9 91 614.7931119449629 1227.5716709567257 2 614.7931518554688 MULTI HCD FTMS 0 0 0 16765 361800.84375 0.005695407719875756 99 -2.7010955810546875 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 111.27 0 0 9.0646 9.0646 97.025 0 0 0 30.63461437856928 16.478174818886373 16.478174818886373 28.32030518180558 0 2.774227503252014 1.6989700043360187 0 2.272013612252961 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YQ]GWVYYH{I|L};Q{[YC]|[HE]}{[TV]|[{I|L}S]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};QYGWVYYH{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YQ]GWVW[YN]{I|L};Q[HT]{NN|[MP]|[D{I|L}]|[EV]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A{[DA]|[EG]}V[R{M(Oxidation (M))|F}]C(Carbamidomethyl (C)){I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{[TV]|[{I|L}S]}D{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9.0646;6.7576;6.1485;4.5657;4.2062;4.011;3.8415;3.8124;3.8016;3.1884 +;-;-;-;-;-;-;-;-;- + 2106 NaN NaN 245988 NaN 13196 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16768 71.696 NaN 748370 35 0 178310 0.261 + 1471 AYSTVPGYYSW 11 61 647.2928793224678 1292.5712057117355 2 647.2928466796875 MULTI HCD FTMS 0 0 0 16765 192232.859375 0.5956402546569771 1 -0.03617095947265625 3 Unmodified _AYSTVPGYYSW_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 29.84058131909904 0.20237991466741817 2 VM{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4 8 20.674 0 0 1.5995 0 0 771.3225205048348 0 771.3225205048348 0 7.496389018391003 0 0 0 0.9247425010840047 0 0 0 VM{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.5995 - 472 NaN NaN 215081.7 NaN 13197 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16769 71.699 NaN 564200 35 0 53173 0.261 + 12955 KYIDYIFNV 9 95 587.8103983506529 1173.6062437681057 2 587.8106689453125 MULTI HCD FTMS 0 0 0 16765 275099 0.13933264434922024 6 -0.1641387939453125 4 Unmodified _KYIDYIFNV_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 63.227496030279354 0.01306643085373406 2 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV 9 2 + 64.19 0 0 5.4695 5.4695 83.602 0 0 0 1.7609125905568206 1.2493873660830062 1.2493873660830062 1.2493873660830062 0 2.274227503252014 0 0 0.23965182871044374 [Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}NV;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}VN;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}NV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}VN;[Y{I|L}]KDY{I|L}{M(Oxidation (M))|F}GGV;[YK]{I|L}DY{I|L}{M(Oxidation (M))|F}GGV;[Y{I|L}]KDY{I|L}{[NV]|[RG]}{M(Oxidation (M))|F};[YK]{I|L}DY{I|L}{[NV]|[RG]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}K{I|L}Y[EP]K{M(Oxidation (M))|F};[YK]S{I|L}Y[EP]K{M(Oxidation (M))|F} 5.4695;5.363;5.3194;5.213;4.6849;4.5348;3.2534;3.1033;3.0105;3.0105 -;-;+;-;-;-;-;-;-;- + 2340 NaN NaN 179830.2 NaN 13198 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16770 71.702 NaN 1055100 35 0 117750 0.261 + 19126 NFLSRSFYW 9 105 610.2980537137481 1218.5815544942961 2 610.2987060546875 MULTI HCD FTMS 0 0 0 16765 287481.34375 0.3469341476255342 -3 0.07445526123046875 5 Unmodified _NFLSRSFYW_ ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 80.6760300276096 0.005633624786464751 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW 9 0 + 93.739 0 0 7.6925 7.6925 88.679 0 0 0 4.136890462689138 14.901727763731856 4.136890462689138 4.136890462689138 0 2.774227503252014 0 0.3494850021680094 1.2658715643802767 + + {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS{M(Oxidation (M))|F}YW;{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}SRS{M(Oxidation (M))|F}YW;[Y{I|L}]{[QG]|[NA]}RS{M(Oxidation (M))|F}YW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRYYAW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS[HD]P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS[WY]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}S[VG]S{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRYYAW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS[HD]P{M(Oxidation (M))|F} 7.6925;7.353;5.8403;5.6455;5.4205;5.3786;5.2306;5.0846;5.081;4.8939 +;-;-;-;-;-;-;-;-;- + 2155 NaN NaN 258407.4 NaN 13199 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16771 71.706 NaN 775560 35 0 207390 0.261 + 18048 MLSHTDYII 9 75 546.775787349872 1091.5370217665438 2 546.7643432617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _MLSHTDYII_ REV__ENSG00000155957|ENST00000358230|TMBIM4;REV__ENST00000539652.1_1_12:66522892-66539669:-|nuORF 21.74664581756881 0.17247014374749275 2 Q{I|L}{I|L} 3 -1 33.258 0 0 3.0469 0 0 719.276364493567 0 719.276364493567 0 -5.336003313407076 -5.336003313407076 0 0 0 0 0 0.7059771852360797 Q{I|L}{I|L} 3.0469 - 103 NaN NaN 214115.7 NaN 13200 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16772 71.709 NaN 1061000 35 0 232810 0.261 + 20299 NYPETLGRLLI 11 90 644.8668581178824 1287.7191633025648 2 644.8670043945312 MULTI HCD FTMS 0 0 0 16765 240790.75 0.5309139952571716 -1 0.01953887939453125 7 Unmodified _NYPETLGRLLI_ ENSG00000103184|ENST00000251170|SEC14L5;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 70.92866715596459 0.014425866313342946 2 NY[EP]T{I|L}GR{I|L}{I|L}{I|L} 11 0 + 78.426 0 0 6.0903 6.0903 93.867 0 0 0 57.456769977759905 9.229404389495912 9.229404389495912 78.42587010784047 0 2.274227503252014 2 0.3807196863200844 0.5 + + NY[EP]T{I|L}GR{I|L}{I|L}{I|L} 6.0903 + + 110 + NaN NaN 248436.8 NaN 13201 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16773 71.712 NaN 402250 35 0 29922 0.262 -1 MVLTEEPLL 9 65 530.7832628784496 1059.551972823699 2 530.7658081054688 MULTI HCD FTMS 0 0 0 16765 28298.537109375 0.4353432462451597 -1 0.01953887939453125 8 Oxidation (M) _M(Oxidation (M))VLTEEPLL_ ENSG00000118217|ENST00000367942|ATF6 26.88365393820708 0.12808753336095696 2 [YT]D{I|L}PEP{I|L}{I|L} 9 -1 + 55.588 0 0 5.2464 5.2464 90.567 0 0 0 5.6424927368725974 38.16569691289537 5.6424927368725974 24.490925311194186 0 1.079689690656103 0 0.6989700043360187 0 [YT]D{I|L}PEP{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}[{I|L}T]EP{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}P{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}P{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[RP]{[CT]|[{M(Oxidation (M))|F}G]}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[NP]P{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[RP][WD]{I|L}{I|L} 5.2464;2.935;2.392;2.2741;0.98121;0.36471;0.25305 -;-;-;-;-;-;- 319 NaN NaN 144404.7 NaN 13202 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16774 71.716 NaN 364790 35 0 13081 0.261 + 17491 LYTEAIKFF 9 72 566.3081764059373 1130.6017998786745 2 566.3077392578125 MULTI HCD FTMS 0 0 0 16765 96583.9453125 0.2732420798388141 6 -0.1641387939453125 9 Unmodified _LYTEAIKFF_ ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A 53.832793166522166 0.026208976789938845 2 [Y{I|L}]TE[{I|L}A]K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 58.853 0 0 5.2055 5.2055 92.068 0 0 0 42.39963434401865 13.46787486224656 13.46787486224656 58.853284539139494 0 1.6307196863200843 1.6989700043360187 0.3494850021680094 0 + + [Y{I|L}]TE[{I|L}A]K{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2055 + + 236 + NaN NaN 155144.6 NaN 13203 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16775 71.719 NaN 499020 35 0 122130 0.261 + 11997 KGAAVYFLF 9 76 508.2846038761109 1014.5546548190218 2 508.28509521484375 MULTI HCD FTMS 0 0 0 16765 120008.140625 0.21952464362820354 -3 0.07445526123046875 10 Unmodified _KGAAVYFLF_ ENST00000394464.6_1_5:142780416-142782924:-|nuORF 26.88365393820708 0.12808753336095696 2 VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 4 46.938 0 0 4.6265 0 0 327.19014174629064 0 327.19014174629064 0 35.96910013008056 0 0 0 1.5 0 0 0 + VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.6265 + + 88 NaN NaN 166180.4 NaN 13204 3569 16765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16777 71.724 NaN 773560 35 0 135720 0.327 + 33950 YLSEVFNRLC 10 94 622.3119029738716 NaN 0 622.2946166992188 PEAK HCD FTMS 0 0 0 16776 46150.6796875 1 0 0 1 Unmodified _YLSEVFNRLC_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;REV__FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant 16.149105407346934 0.31182886977857566 2 T{I|L}Y{M(Oxidation (M))|F}Y 5 -1 21.058 0 0 1.6946 0 0 64.04219999977188 488.1923006647094 552.2345006644813 0 0 0 0 0 0 0 0 0 T{I|L}Y{M(Oxidation (M))|F}Y 1.6946 - 1184 + NaN NaN 211790.5 NaN 13205 3570 16776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16778 71.728 NaN 678920 35 0 162510 0.261 + 1472 AYSTVPGYYSW 11 61 647.2928793224678 1292.5712057117355 2 647.2929077148438 MULTI HCD FTMS 0 0 0 16776 282707.6875 0.8759796817436541 2 -0.05226898193359375 2 Unmodified _AYSTVPGYYSW_ ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-4|CASP7 19.361941925380144 0.2883811769592959 2 VM{[WS]|[C(Carbamidomethyl (C)){I|L}]} 4 8 23.188 0 0 1.7939 0 0 771.3223630460996 0 771.3223630460996 0 15.115618994235687 0 0 0 1 0 0 0 VM{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.7939 - 151 NaN NaN 210917.7 NaN 13206 3570 16776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16779 71.732 NaN 1248100 35 0 152360 0.264 -1 PDGSSKGC 8 76 404.1696931571729 806.3248333811458 2 404.1700744628906 MULTI HCD FTMS 0 0 0 16776 1035858.875 0.1237050401982703 -7 0.1992645263671875 3 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.153727298422 0 449.153727298422 0 0.45757490560674974 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 6 NaN NaN 280894.4 NaN 13207 3570 16776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16780 71.735 NaN 401700 35 0 105940 0.261 + 25358 SEALALTQTW 10 56 560.2873059456435 1118.560058958087 2 560.2874145507812 MULTI HCD FTMS 0 0 0 16776 195152.0625 1 0 0 4 Unmodified _SEALALTQTW_ ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF 38.61474834105838 0.1574278268413918 2 {I|L}T[NG]P{M(Oxidation (M))|F} 6 9 30.754 0 0 2.7494 0 0 471.230909643437 0 471.230909643437 0 23.764392507695558 0 0 0 1.2887254899964358 0 0.3252574989159953 0 {I|L}T[NG]P{M(Oxidation (M))|F} 2.7494 - 80 + NaN NaN 154706.4 NaN 13208 3570 16776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16782 71.74 NaN 1169400 35 0 179660 0.327 + 18123 MPDFDLHL 8 84 494.2338834211016 986.4532139090032 2 494.2339782714844 MULTI HCD FTMS 0 0 0 16781 677866.75 0.4270489800350794 6 -0.170745849609375 1 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 89.42679046578446 0.023235607516423472 2 MPD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 80.597 0 0 8.1704 8.1704 96.277 0 0 0 43.25257498915995 8.979400086720375 8.979400086720375 34.98651242028323 0 2.048455006504028 1.5228787452803376 0.6747425010840047 0 + + MPD{M(Oxidation (M))|F}D{I|L}H{I|L};[DP]{M(Oxidation (M))|F}DM{I|L}H{I|L};{[{M(Oxidation (M))|F}D]|MM}PDM{I|L}H{I|L};[DP]{M(Oxidation (M))|F}D{I|L}MH{I|L};{[{M(Oxidation (M))|F}D]|MM}PD{I|L}MH{I|L};[DP]{M(Oxidation (M))|F}D{I|L}HM{I|L};{[{M(Oxidation (M))|F}D]|MM}PD{I|L}HM{I|L};[DP]{M(Oxidation (M))|F}D{I|L}H{I|L}M;{[{M(Oxidation (M))|F}D]|MM}PD{I|L}H{I|L}M 8.1704;4.6237;4.5434;3.0759;2.9956;2.4668;2.3865;2.0634;1.9831 +;-;-;-;-;-;-;-;- + 436 + NaN NaN 271033.2 NaN 13209 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16783 71.744 NaN 946840 35 0 97964 0.261 + 26753 SYEYRFLEF 9 96 627.2955431595194 1252.5765333858387 2 627.2954711914062 MULTI HCD FTMS 0 0 0 16781 462591.59375 0.5523394743560381 1 -0.0361175537109375 2 Unmodified _SYEYRFLEF_ ENSG00000131378|ENST00000334133|RFTN1 103.82355648334675 0.003950725192926219 2 {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 9 0 + 79.677 0 0 6.3611 6.3611 86.648 0 0 0 4.137342758552691 46.3219097107516 4.137342758552691 5.216525140920609 0 2.5994850021680094 0 1.110924374808178 0 + + {[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[YE]SYR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYR{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F};[YE]SYR{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYRE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EYRE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YE]SYRE{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]SYRE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][HT][PS]{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}EY{I|L}{[RE]|[WV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3611;5.9446;5.1867;4.7702;4.6832;4.3022;4.2667;3.8858;3.3917;2.9276 +;-;-;-;-;-;-;-;-;- + 1809 NaN NaN 243694 NaN 13210 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16784 71.748 NaN 637750 35 0 106910 0.264 -1 VPMEDINL 8 59 473.73125633104536 945.4479597288907 2 473.73126220703125 MULTI HCD FTMS 0 0 0 16781 299132.28125 0.39140356880054655 -1 0.01615142822265625 3 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 42.09456458481378 0.20402248593209013 2 D{I|L}N{I|L} 4 -1 44.285 0 0 4.684 0 0 472.20125014472814 0 472.20125014472814 0 21.77948461635836 0 0 0 0.8494850021680094 0 0.3494850021680094 0.4247425010840047 D{I|L}N{I|L} 4.684 + + 94 NaN NaN 192151.4 NaN 13211 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16785 71.751 NaN 724350 35 0 79980 0.261 + 11539 IYSIDFTRF 9 98 581.3006497563529 1160.5867465795056 2 581.300537109375 MULTI HCD FTMS 0 0 0 16781 238555.21875 0.1750876520033813 6 -0.170745849609375 4 Unmodified _IYSIDFTRF_ ENSG00000175970|ENST00000344651|UNC119B 121.5340881639634 0.001118397630175091 2 {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F} 9 0 + 106.2 0 0 9.1508 9.1508 96.016 0 0 0 68.86382518990469 16.478174818886373 16.478174818886373 16.65541839107067 0 2.7689301784845295 1.6989700043360187 1.0941876774005248 0.25 + + {I|L}YS{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};[Y{I|L}]S{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};[YT]V{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};{I|L}YS{I|L}[VP][HD]A{M(Oxidation (M))|F};[Y{I|L}]S{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YE]{M(Oxidation (M))|F};[Y{I|L}]S{I|L}[YR]EA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}D{M(Oxidation (M))|F}TR{M(Oxidation (M))|F};{I|L}[HA]T{M(Oxidation (M))|F}D{I|L}[TP]{M(Oxidation (M))|F};[YT]V{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YE]{M(Oxidation (M))|F};[YT]V{I|L}[YR]EA{M(Oxidation (M))|F} 9.1508;7.7157;6.515;5.9917;5.2722;5.1178;4.9988;4.5786;4.0715;3.9171 +;+;-;-;-;-;-;-;-;- + 2421 + NaN NaN 204596.5 NaN 13212 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16786 71.755 NaN 1300000 35 0 212280 0.261 + 16106 LPTEAEFQL 9 79 524.2717561488396 1046.528959364479 2 524.2716064453125 MULTI HCD FTMS 0 0 0 16781 358617.25 0.20117205413657668 -4 0.10720062255859375 5 Unmodified _LPTEAEFQL_ ENSG00000183508|ENST00000369448|TENT5C 69.10491478415734 0.009377850133389008 2 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 5 6 54.821 0 0 5.2383 0 0 406.2212160603255 0 406.2212160603255 0 22.139472062827394 0 0 0 0.3494850021680094 0 1.0114393726401687 0.3252574989159953 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 5.2383 - 645 NaN NaN 287147.9 NaN 13213 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16787 71.758 NaN 296350 35 0 71552 0.261 + 25359 SEALALTQTW 10 54 560.2873059456435 1118.560058958087 2 560.28759765625 MULTI HCD FTMS 0 0 0 16781 119923.5859375 0.6145135460072322 1 -0.0361175537109375 6 Unmodified _SEALALTQTW_ ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF 18.373094154950223 0.33925629317698053 2 {I|L}A 2 8 18.583 0 0 1.6614 0 0 534.2430999140217 397.17319666080317 931.4162965748249 0 0 0 0 0 1 0 0 0 + {I|L}A 1.6614 + + 15 + NaN NaN 134993 NaN 13214 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16788 71.761 NaN 722940 35 0 133770 0.261 + 23460 RLPSSWALF 9 78 538.7976060005608 1075.5806590679215 2 538.797607421875 MULTI HCD FTMS 0 0 0 16781 102262.2734375 0.29056046221981974 -1 0.01615142822265625 7 Unmodified _RLPSSWALF_ ENSG00000129636|ENST00000320640|ITFG1 29.081581746732265 0.1154664336125038 2 A{I|L}{M(Oxidation (M))|F} 3 6 39.253 0 0 3.6494 0 0 726.3807757715964 0 726.3807757715964 0 27.825834421237516 0 0 0 1.305462187404089 0 0 0 + A{I|L}{M(Oxidation (M))|F} 3.6494 + + 252 NaN NaN 213502.2 NaN 13215 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16789 71.765 NaN 351270 35 0 44894 0.261 + 29915 VFDTSIAQL 9 58 497.26584714579946 992.5171413583989 2 497.26531982421875 MULTI HCD FTMS 0 0 0 16781 122568.1015625 0.6160297128870448 -1 0.01615142822265625 8 Unmodified _VFDTSIAQL_ ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 86.33184430468982 0.004622086694044132 2 [{M(Oxidation (M))|F}V]DTS{I|L}AQ{I|L} 9 0 + 77.022 0 0 7.7603 7.7603 91.662 0 0 0 3.2568864632742844 63.52745011790198 3.2568864632742844 9.208187539523749 0 2.610924374808178 0 1.1861818737241734 0 + + [{M(Oxidation (M))|F}V]DTS{I|L}AQ{I|L};[{M(Oxidation (M))|F}V]DTS{I|L}A[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[YG]S{I|L}AQ{I|L};{[QN]|[E{I|L}]|[KN]}[YG]S{I|L}A[AG]{I|L};[{M(Oxidation (M))|F}V]DTS{[NV]|[RG]}V{I|L};{[QN]|[E{I|L}]|[KN]}[YG]SRR{I|L} 7.7603;6.8325;5.9992;5.0714;2.4347;1.9415 +;-;-;-;-;- + 220 NaN NaN 155112.2 NaN 13216 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16790 71.768 NaN 306140 35 0 68550 0.261 + 33888 YLNFEINL 8 60 513.267896514424 1024.521240095648 2 513.2679443359375 MULTI HCD FTMS 0 0 0 16781 70714.5390625 0.3861084891253567 1 -0.0361175537109375 9 Unmodified _YLNFEINL_ tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1 10.823927491677226 0.514154816617796 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.4255 0 0 859.4748971774824 0 859.4748971774824 0 2.04119982655925 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.4255 + + 29 + NaN NaN 139360.5 NaN 13217 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16791 71.771 NaN 389690 35 0 17827 0.261 + 2931 DYSPYFKTI 9 75 567.2787764767183 1132.5430000202366 2 567.2780151367188 MULTI HCD FTMS 0 0 0 16781 90367.015625 0.4407995914774265 19 -0.5309524536132812 10 Unmodified _DYSPYFKTI_ CON__P02533;CON__P08779;CON__Q3ZAW8;CON__Q6IFX2;CON__Q9Z2K1;ENSG00000186832|ENST00000301653|KRT16;ENSG00000186847|ENST00000167586|KRT14;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant 21.536976647645854 0.1742816388551942 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 31.923 0 0 2.8187 0 0 0 764.3976502490053 764.3976502490053 7.618937681782892 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 2.8187 + + 230 NaN NaN 147875.3 NaN 13218 3571 16781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16793 71.776 NaN 346920 35 0 25376 0.327 + 34457 YPEVEIFRTL 10 81 633.8399620266161 1265.6653711200322 2 633.8397216796875 MULTI HCD FTMS 0 0 0 16792 147463.34375 0.736111680924836 2 -0.04961395263671875 1 Unmodified _YPEVEIFRTL_ ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant 64.69154705217129 0.02435962300912059 2 YPEVE{I|L}{M(Oxidation (M))|F} 7 3 91.815 0 0 7.2543 0 0 0 385.2206279203251 385.2206279203251 66.93266351821279 0 0 0 0 2.4361818737241734 1.5228787452803376 0.3252574989159953 0 + YPEVE{I|L}{M(Oxidation (M))|F} 7.2543 + + 523 + NaN NaN 141013.3 NaN 13219 3572 16792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16794 71.78 NaN 794960 35 0 43207 0.261 + 31844 VYMIRVYLL 9 103 593.3388862694624 1184.6632196057246 2 593.3387451171875 MULTI HCD FTMS 0 0 0 16792 220437.9375 0.7195849959379335 -5 0.14331817626953125 2 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 54.773552608820026 0.024892918755467567 2 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 53.232 0 0 4.4934 4.4934 83.28 0 0 0 14.475964267001629 16.478174818886373 14.475964267001629 3.979400086720375 0 1.8371804965004639 1.154901959985743 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]K[C(Carbamidomethyl (C))K]VY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}VY{I|L};[YV]K[C(Carbamidomethyl (C))K]V{I|L}Y{I|L};[YV]K[C(Carbamidomethyl (C))K]{I|L}YV{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[YV]K[C(Carbamidomethyl (C))K]{I|L}VY{I|L} 4.4934;4.1575;4.0234;4.0111;3.8845;3.8027;3.6752;3.5486;3.5411;3.4668 +;-;-;-;-;-;-;-;-;- + 2146 NaN NaN 207894.2 NaN 13220 3572 16792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16795 71.784 NaN 291990 35 0 19596 0.261 -1 ECLYVNFDF 9 65 603.76028266484 1205.50601239648 2 603.7604370117188 MULTI HCD FTMS 0 0 0 16792 143623.875 1 0 0 3 Carbamidomethyl (C) _EC(Carbamidomethyl (C))LYVNFDF_ ENSG00000104408|ENST00000220849|EIF3E 24.990960013464015 0.14443998892849796 2 M{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 -1 53.276 0 0 4.4194 0 0 305.13728530097814 0 305.13728530097814 0 42.81820425957598 0 0 0 2.305462187404089 0 0 0 M{NN|[MP]|[D{I|L}]|[EV]}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.4194 - 135 NaN NaN 141047.2 NaN 13221 3572 16792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16796 71.787 NaN 482000 35 0 39877 0.262 -1 FPIEAGDMF 9 80 521.731240149677 1041.4479273661539 2 521.7312622070312 MULTI HCD FTMS 0 0 0 16792 117641.40625 0.5546313806863151 19 -0.5340728759765625 4 Oxidation (M) _FPIEAGDM(Oxidation (M))F_ ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5 37.97399986684836 0.07464525285885698 2 VKEDSTS{M(Oxidation (M))|F} 8 -1 44.806 0 0 4.3023 0 0 130.0444982663476 0 130.0444982663476 0 27.27034439531742 0 0 0 0.805462187404089 0 0.5796896906561032 0.2614393726401688 VKEDSTS{M(Oxidation (M))|F} 4.3023 - 371 + NaN NaN 168913.7 NaN 13222 3572 16792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16797 71.791 NaN 274700 35 0 24176 0.261 -1 0 60 599.6348287451115 3591.7653136710687 6 599.8017578125 MULTI HCD FTMS 0 0 0 16792 109155.65625 0.8737309898221542 -4 0.10797882080078125 5 NaN NaN 2 YY{M(Oxidation (M))|F} 3 -1 20.29 0 0 0.56492 0 0 0 3115.5463249838213 3115.5463249838213 9.321355998091434 0 0 0 0 0 1.6989700043360187 0 0 YY{M(Oxidation (M))|F} 0.56492 - 103 NaN NaN 130929.6 NaN 13223 3572 16792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16798 71.794 NaN 173810 35 0 24749 0.262 + 34797 YQYSGLEI 8 50 486.737468297441 971.460383661682 2 486.7373962402344 MULTI HCD FTMS 0 0 0 16792 49586.90234375 0.48397569874681173 -8 0.21527099609375 6 Unmodified _YQYSGLEI_ REV__ENSG00000163291|ENST00000512733|PAQR3;REV__nc|ENSG00000163291|Q6TCH7-2|PAQR3;REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3;REV__nc|ENSG00000163291|Q6TCH7-4|PAQR3 10.073929032068715 0.5196730168178844 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 2.1585 0 0 707.3122341028915 0 707.3122341028915 0 0.7082530717588753 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 2.1585 - 21 + NaN NaN 113585 NaN 13224 3572 16792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16800 71.799 NaN 18116000 35 0 2947800 0.327 + 6154 FPEHIFPAL 9 109 535.7874179887401 1069.5602830442801 2 535.7877197265625 MULTI HCD FTMS 0 0 0 16799 11549448 0.7214766953763565 1 -0.0268707275390625 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 117.59872219059416 0.0017018906413822257 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 77.065 0 0 7.2053 7.2053 89.39 0 0 0 16.710573253298747 41.7375925101523 16.710573253298747 8.066884185923655 0 2.2196100389531246 1.2218487496163564 0.8882104921644451 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L};[EP]H{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{I|L}{M(Oxidation (M))|F} 7.2053;6.4511;5.9185;5.7272;5.3979;5.3368;5.2009;5.193;5.0877;4.8716 +;-;-;-;-;-;-;-;-;- + 6509 NaN NaN 702634.1 NaN 13225 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16801 71.803 NaN 7178400 35 0 1931400 0.169 + -1 ATHMHLHLLF 10 74 618.3213275062147 1234.6281020792294 2 618.3211669921875 MULTI HCD FTMS 0 0 0 16799 4955832.5 0.6898226973257471 1 -0.0268707275390625 2 Oxidation (M) _ATHM(Oxidation (M))HLHLLF_ REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|0|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|3 10.073929032068715 0.4168838835836452 2 YYPEYK{I|L}{I|L} 8 -1 73.141 0 0 5.9241 0 0 0 162.0566136874369 162.0566136874369 45.93031495462782 0 0 0 0 2.579689690656103 2 0 0 YYPEYK{I|L}{I|L} 5.9241 - 416 NaN NaN 518923.3 NaN 13226 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16802 71.805 NaN 3455200 35 0 394320 0.232 + 13282 KYMDINFDF 9 114 596.7711176425278 1191.5276823518554 2 596.7711181640625 MULTI HCD FTMS 0 0 0 16799 2043674 0.6217061940743074 1 -0.0268707275390625 3 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 176.4269993864032 3.292532597148328E-10 2 [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 95.486 0 0 8.0138 8.0138 89.619 0 0 0 3.2568864632742844 43.06810945375766 3.2568864632742844 5.254537344402905 0 2.6989700043360187 0 0.9802046884880937 1.1861818737241734 + + [YK]MD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[HG]|PP}D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YK]MD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}KD{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GV{M(Oxidation (M))|F}{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[HG]|PP}D{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}KD{I|L}GG{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8.0138;7.5728;7.5095;7.3544;7.241;7.1002;7.0866;6.9101;6.8036;6.7367 +;-;-;-;-;-;-;-;-;- + 12158 NaN NaN 530272.6 NaN 13227 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16803 71.808 NaN 4677000 35 0 414470 0.232 + 20720 PFVDHVFTF 9 118 554.776742126838 1107.538931320476 2 554.77685546875 MULTI HCD FTMS 0 0 0 16799 2436115 0.7508263978530954 1 -0.0268707275390625 4 Unmodified _PFVDHVFTF_ ENSG00000113460|ENST00000336767|BRIX1 234.6835571636531 7.149366722189799E-32 2 P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 120.53 0 0 10.883 10.883 92.938 0 0 0 64.9619877965177 16.478174818886373 16.478174818886373 7.341284356197235 0 3.2302046884880937 0 2.690614065464281 0 + + P{M(Oxidation (M))|F}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}PVDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHDV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDHVT{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VDH{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHDVT{M(Oxidation (M))|F}{M(Oxidation (M))|F};P{[QS]|[NT]}PWV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]PDHV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VHD{M(Oxidation (M))|F}VT{M(Oxidation (M))|F} 10.883;10.22;9.8503;8.9755;8.8155;8.4919;7.9407;7.7123;7.6196;7.6172 +;-;+;-;-;-;-;-;-;- + 13555 + NaN NaN 671104.8 NaN 13228 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16804 71.811 NaN 988350 35 0 89392 0.261 + 13189 KYLTEGLLQF 10 82 606.3371186913156 1210.659684449431 2 606.3374633789062 MULTI HCD FTMS 0 0 0 16799 819077.3125 0.1344517181685235 8 -0.21968841552734375 5 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 89.60864043982822 0.0010324512941143173 2 [Y{I|L}]KTEG{I|L}{I|L}Q{M(Oxidation (M))|F} 10 2 + 100.56 0 0 8.3063 8.3063 88.967 0 0 0 4.21999755554296 16.53212513775344 4.21999755554296 2.4865124202832334 0 2.1989700043360187 1.0457574905606752 1.4436726795685342 0.2742275032520141 [Y{I|L}]KTEG{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEAV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAD{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTAEV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TAD{I|L}{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEG{I|L}{I|L}[AG]{M(Oxidation (M))|F};[YK]{I|L}TAEV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]KTEAV{I|L}[AG]{M(Oxidation (M))|F} 8.3063;8.1009;8.0678;7.9577;7.8624;7.7523;7.7192;7.5493;7.5138;7.3439 -;-;-;+;-;-;-;-;-;- + 1681 NaN NaN 242369.8 NaN 13229 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16805 71.814 NaN 552210 35 0 42726 0.261 + 2333 DNGHVKLADFG 11 96 586.7898999324784 1171.5652469317567 2 586.7909545898438 MULTI HCD FTMS 0 0 0 16799 255478.609375 1 0 0 6 Unmodified _DNGHVKLADFG_ ENSG00000011566|ENST00000263881|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;nc|ENSG00000011566|Q8IVH8-3|MAP4K3 20.41453444215458 0.279209903849948 2 E{I|L}A{M(Oxidation (M))|F}AG{M(Oxidation (M))|F} 7 9 50.209 0 0 4.2856 0 0 418.23250014472814 0 418.23250014472814 0 31.792519900211573 0 0 0 0.75 0 0.3252574989159953 0 E{I|L}A{M(Oxidation (M))|F}AG{M(Oxidation (M))|F} 4.2856 - 1341 NaN NaN 170027.6 NaN 13230 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16806 71.818 NaN 319490 35 0 12201 0.261 + 33293 YFNNESDII 9 93 557.7552013894729 NaN 0 557.7554321289062 PEAK HCD FTMS 0 0 0 16799 32913.8125 0.36242047098502295 1 -0.0268707275390625 7 Unmodified _YFNNESDII_ ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11 21.74664581756881 0.17567436591797916 2 TVNM 4 8 17.924 0 0 1.6097 0 0 274.06734709048834 391.1970308893188 665.2643779798071 0 0 0 0 0 0 0 0.28872548999643577 0 TVNM 1.6097 - 535 + NaN NaN 142309.2 NaN 13231 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16807 71.821 NaN 131450 35 0 23698 0.261 + -1 LPCWGCKV 8 40 481.73341796551614 NaN 0 481.7331848144531 PEAK HCD FTMS 0 0 0 16799 42574.8046875 0.793144109805321 1 -0.0268707275390625 8 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))WGCKV_ REV__ENST00000200691.4_1_16:56624919-56624976:+|nuORF 9.347437153973935 0.38822285293237185 2 P 1 -1 9.2917 0 0 0.96643 0 0 113.08274131158824 748.2924129164345 861.3751542280228 0 0 0 0 0 0.3807196863200844 0 0 0 P 0.96643 + + 1 + NaN NaN 104332.3 NaN 13232 3573 16799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16809 71.826 NaN 3324700 35 0 369030 0.326 + 21681 PYYSKFILI 9 110 572.3261392133509 1142.6377254935016 2 572.326171875 MULTI HCD FTMS 0 0 0 16808 2422297 0.5467203509414986 2 -0.05554962158203125 1 Unmodified _PYYSKFILI_ ENSG00000164815|ENST00000297431|ORC5 129.77232118876745 0.0006187813247758304 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 9 0 + 103.46 0 0 9.0547 9.0547 94.252 0 0 0 9.422991019326801 9.422991019326801 9.422991019326801 9.422991019326801 0 2.4802046884880937 2 1.3076556684809653 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};PYYSK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SYK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}ESK{M(Oxidation (M))|F}{I|L}{I|L}{I|L};[YG]{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L};{I|L}{I|L}{M(Oxidation (M))|F}KSYYP{I|L};{I|L}{I|L}{M(Oxidation (M))|F}KSYPY{I|L};{I|L}{I|L}{M(Oxidation (M))|F}KSY{I|L}YP;{I|L}{I|L}{M(Oxidation (M))|F}KSYY{I|L}P;{I|L}{I|L}{M(Oxidation (M))|F}KS{I|L}YYP 9.0547;8.23;7.782;3.6129;3.5251;3.0853;3.0406;2.4887;2.2252;1.9618 +;+;-;-;-;-;-;-;-;- + 2579 NaN NaN 516102.3 NaN 13233 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16810 71.83 NaN 1042800 35 0 329240 0.261 + 17243 LYPEGLAQL 9 59 502.27731710379317 1002.5400812743864 2 502.2769775390625 MULTI HCD FTMS 0 0 0 16808 629355.375 0.5782412350653203 2 -0.05554962158203125 2 Unmodified _LYPEGLAQL_ ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF 58.678817012210395 0.019429721296335044 2 {[QN]|[E{I|L}]|[KN]}ASW{I|L}TA{I|L} 9 6 + 46.648 0 0 4.653 4.653 89.667 0 0 0 1.9627248839266542 24.693189900427583 1.9627248839266542 24.384934718424475 0 0.6989700043360187 0 0.805462187404089 0 {[QN]|[E{I|L}]|[KN]}ASW{I|L}TA{I|L};[QA]{I|L}G{I|L}[EP]Y{I|L};[Q{I|L}]Q{I|L}[EP]Y{I|L};[Q{I|L}]AG{I|L}[EP]Y{I|L} 4.653;2.2207;1.1509;1.0208 -;-;-;- 391 NaN NaN 255288.4 NaN 13234 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16811 71.834 NaN 520360 35 0 56939 0.261 + 32640 WLYSVPWGF 9 84 577.7855369337191 1153.556520934238 2 577.7850341796875 MULTI HCD FTMS 0 0 0 16808 161903.078125 0.4490659055481745 2 -0.05554962158203125 3 Unmodified _WLYSVPWGF_ ENSG00000188501|ENST00000695545|LCTL;nc|ENSG00000188501|Q6UWM7-2|LCTL 23.1484247019978 0.1603590852062899 2 AWG{M(Oxidation (M))|F} 4 6 48.928 0 0 4.2415 0 0 674.3368868778889 0 674.3368868778889 0 19.7665803969754 0 0 0 1.8494850021680094 0 0 0 AWG{M(Oxidation (M))|F} 4.2415 - 433 NaN NaN 178757.2 NaN 13235 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16812 71.837 NaN 671190 35 0 78326 0.262 + 15944 LPPGEWEL 8 72 470.7424453859744 939.4703378387488 2 470.7422790527344 MULTI HCD FTMS 0 0 0 16808 197021.09375 0.6071566318548797 -3 0.08573150634765625 4 Unmodified _LPPGEWEL_ ENSG00000163362|ENST00000413687|INAVA;ENST00000487626.1_1_3:111904329-111904731:-|nuORF;nc|ENSG00000163362|Q3KP66|INAVA 18.13498045792455 0.4603629008820478 2 {[QN]|[E{I|L}]|[KN]}P[PG]WE{I|L} 8 2 + 31.749 0 0 3.3795 3.3795 83.498 0 0 0 6.355129762210918 17.83112296654407 6.355129762210918 7.658467447160977 0 0.4247425010840047 0 0 0.28872548999643577 {[QN]|[E{I|L}]|[KN]}P[PG]WE{I|L};[PA][VP]EWE{I|L};[EP]{I|L}[PG]WE{I|L};[VP][PA]EWE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{[QG]|[NA]}{I|L} 3.3795;2.5643;2.5643;1.6647;0.68457 -;-;-;-;- 332 NaN NaN 189890.6 NaN 13236 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16813 71.84 NaN 1211000 35 0 210350 0.261 + 12685 KWLLYPTEI 9 88 581.8290189200499 1161.6434849068996 2 581.8291015625 MULTI HCD FTMS 0 0 0 16808 382696.03125 0.2974185490611634 -3 0.08573150634765625 5 Unmodified _KWLLYPTEI_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 75.76082778847304 0.0072241045649327805 2 {I|L}YPTE{I|L} 6 3 61.433 0 0 5.2885 0 0 427.25740248847814 0 427.25740248847814 0 14.939804789107157 0 0 0 2.055462187404089 0 0.4247425010840047 0 + {I|L}YPTE{I|L} 5.2885 + + 844 NaN NaN 293016.7 NaN 13237 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16814 71.844 NaN 857580 35 0 56428 0.261 -1 YIMAEEVEW 9 103 593.2611451598144 1184.5077373864287 2 593.2615966796875 MULTI HCD FTMS 0 0 0 16808 136153.921875 0.6485217633603796 2 -0.05554962158203125 6 Oxidation (M) _YIM(Oxidation (M))AEEVEW_ ENSG00000089472|ENST00000343002|HEPH;HEPH|p.R1086Efs*8|1|0.77|ENSG00000089472|chrX:66266445-66266445|C/-|frameshift_variant;HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH 13.50788311687929 0.24365122550260465 2 [YV]KA[{M(Oxidation (M))|F}E]{I|L}EN 9 -1 27.858 0 0 2.3519 0 0 0 87.9624183737607 87.9624183737607 3.5611508472699462 0 0 0 0 0 1.154901959985743 0 0.2742275032520141 [YV]KA[{M(Oxidation (M))|F}E]{I|L}EN 2.3519 - 4192 NaN NaN 237761 NaN 13238 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16815 71.847 NaN 282170 35 0 35137 0.261 -1 PYMANVYLI 9 63 550.2785706500007 1098.5425883668013 2 550.2782592773438 MULTI HCD FTMS 0 0 0 16808 101696.65625 0.649480078533313 4 -0.11437225341796875 7 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 21.74664581756881 0.17247014374749275 2 VY{I|L}{I|L} 4 -1 38.443 0 0 3.4995 0 0 592.231248924025 0 592.231248924025 0 24.463950151760656 0 0 0 1 0 0 0 VY{I|L}{I|L} 3.4995 + + 34 NaN NaN 146826.9 NaN 13239 3574 16808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16817 71.852 NaN 1656900 35 0 149360 0.327 + 30728 VPINVVETL 9 88 492.29237186406556 982.5701907949311 2 492.29241943359375 MULTI HCD FTMS 0 0 0 16816 805146.375 1 0 0 1 Unmodified _VPINVVETL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 131.26759243768294 0.0005280990274065272 2 [VP]{I|L}NVVET{I|L} 9 0 + 93.84 0 0 9.5504 9.5504 91.776 0 0 0 6.9897000433601875 16.478174818886373 6.9897000433601875 6.276362525516518 0 2.1747425010840047 1.3979400086720375 0.3807196863200844 1.0994850021680094 + + [VP]{I|L}NVVET{I|L};[VP]QVVVET{I|L};[{I|L}P]VNVVET{I|L};[{I|L}P]NVVVET{I|L};[VP]T[KP]VET{I|L};[VP]{I|L}NVD{I|L}T{I|L};[VP]{I|L}GGVVET{I|L};[{I|L}P]S[KP]VET{I|L};[VP]QVVD{I|L}T{I|L};[{I|L}P]VNVD{I|L}T{I|L} 9.5504;8.9117;8.8391;8.2003;7.8526;7.7492;7.4943;7.1412;7.1104;7.0378 +;-;-;-;-;-;-;-;-;- + 1041 NaN NaN 341729.8 NaN 13240 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16818 71.856 NaN 768290 35 0 86055 0.261 + 19127 NFLSRSFYW 9 105 610.2980537137481 1218.5815544942961 2 610.2986450195312 MULTI HCD FTMS 0 0 0 16816 325957 0.3933667920236172 3 -0.088287353515625 2 Unmodified _NFLSRSFYW_ ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 84.5221896805406 0.004669506596793478 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW 9 0 + 89.676 0 0 7.359 7.359 86.77 0 0 0 1.0822685886482475 11.847105889690965 1.0822685886482475 1.0822685886482475 0 2.8494850021680094 0 0.3494850021680094 0.9604093769761876 + + {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS{M(Oxidation (M))|F}YW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS[HD]P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRS[WY]{M(Oxidation (M))|F};[Y{I|L}]{[QG]|[NA]}RS{M(Oxidation (M))|F}YW;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS[HD]P{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRS[WY]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}SRYYAW;{[CT]|[{M(Oxidation (M))|F}G]}G{I|L}SRYYAW;[Y{I|L}]S{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}YW 7.359;7.2702;5.5159;5.4703;5.1107;4.7805;4.7385;4.4481;4.3593;3.8798 +;-;-;-;-;-;-;-;-;- + 817 NaN NaN 207716.1 NaN 13241 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16819 71.86 NaN 693080 35 0 156960 0.261 + 5137 FETFVFVGF 9 87 546.775787349872 1091.5370217665438 2 546.764404296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FETFVFVGF_ REV__ENSG00000203805|ENST00000398250|PLPP4;REV__nc|ENSG00000203805|Q5VZY2-2|PLPP4;REV__nc|ENSG00000203805|Q5VZY2-4|PLPP4 16.942295170755138 0.21397866736869717 2 {[C(Carbamidomethyl (C))E]|[WC]}[WP]{M(Oxidation (M))|F}Q{I|L}{I|L} 8 -1 + 43.522 0 0 3.9872 3.9872 83.91 0 0 0 4.083917215014296 1.8615705405999563 1.8615705405999563 7.073463531299332 0 0 0 0.5387254899964358 0.75 {[C(Carbamidomethyl (C))E]|[WC]}[WP]{M(Oxidation (M))|F}Q{I|L}{I|L};{I|L}ME[H{I|L}]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}PE[H{I|L}]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F};{I|L}ME[H{I|L}]{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{M(Oxidation (M))|F}PE[H{I|L}]{M(Oxidation (M))|F}R{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))E]|[WC]}[WP]{M(Oxidation (M))|F}[AG]{I|L}{I|L};{M(Oxidation (M))|F}M{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}Q{I|L}{I|L};{[TV]|[{I|L}S]}EEN{M(Oxidation (M))|F}Q{I|L}{I|L};{M(Oxidation (M))|F}M{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}[AG]{I|L}{I|L};{I|L}WK[CS]DD{I|L}{I|L} 3.9872;3.3392;3.2183;2.6482;2.5272;2.4516;2.3215;2.3073;1.4729;1.2778 -;-;-;-;-;-;-;-;-;- 183 NaN NaN 190364.2 NaN 13242 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16820 71.863 NaN 854880 35 0 75285 0.261 + 19828 NYAWVYYHL 9 88 614.7931119449629 1227.5716709567257 2 614.7933349609375 MULTI HCD FTMS 0 0 0 16816 355757.90625 0.0056002808193094085 105 -2.8746414184570312 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 131.26759243768294 0.0005280990274065272 2 [YN]AWVYYH{I|L} 9 0 + 108.5 0 0 8.8383 8.8383 97.679 0 0 0 29.41962823435958 16.478174818886373 16.478174818886373 47.39236828338065 0 2.7302046884880937 1.6989700043360187 0 1.9590606190045112 + + [YN]AWVYYH{I|L};[YN]AW[QT][W{M(Oxidation (M))|F}]{I|L};[YN]AWV[WD]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YN]VYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YN]V[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY]{[QG]|[NA]}VYYH{I|L};{[YD]|[{M(Oxidation (M))|F}M]}QQV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A{[QG]|[NA]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L} 8.8383;4.9777;4.346;4.0899;3.9226;2.8841;2.4628;2.3915;0.7253;0.68802 +;-;-;-;-;-;-;-;-;- + 1467 NaN NaN 232578 NaN 13243 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16821 71.866 NaN 449100 35 0 88915 0.261 + 9497 HPYFYAPELL 10 61 625.316132880936 1248.617712828672 2 625.3158569335938 MULTI HCD FTMS 0 0 0 16816 217641.640625 0.9308084878325208 1 -0.0294647216796875 5 Unmodified _HPYFYAPELL_ CON__P02768-1;CON__P02769;ENSG00000163631|ENST00000295897|ALB 43.85829265575387 0.11192494793849486 2 YYA{M(Oxidation (M))|F}YA 6 7 51.119 0 0 4.0941 0 0 0 467.2504918783887 467.2504918783887 21.057743964882718 0 0 0 0 1.3494850021680094 2 0 0 YYA{M(Oxidation (M))|F}YA 4.0941 - 145 + NaN NaN 147917.5 NaN 13244 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16822 71.87 NaN 281320 35 0 21684 0.262 + 23367 RKPWLMET 8 58 530.7832628784496 1059.551972823699 2 530.765625 MULTI HCD FTMS 0 0 0 16816 41538.67578125 0.6390288617903034 4 -0.1077880859375 6 Unmodified _RKPWLMET_ ENST00000471374.1_1_22:32352234-32352363:+|nuORF 9.347437153973935 0.5250182646323369 2 [YT]D{I|L}[EP][{I|L}P]{I|L} 9 8 + 25.581 0 0 2.4143 2.4143 85.931 0 0 0 4.762036441594194 6.653011952822684 4.762036441594194 12.001962355242952 0 0.4247425010840047 0 0.7742275032520141 0 [YT]D{I|L}[EP][{I|L}P]{I|L};{[{M(Oxidation (M))|F}D]|MM}{I|L}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{I|L};{[{M(Oxidation (M))|F}D]|MM}V{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{I|L} 2.4143;1.2816;1.2816 -;-;- 125 NaN NaN 147429 NaN 13245 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16823 71.873 NaN 175370 35 0 27372 0.261 + 12387 KPFEAFLSF 9 56 543.2870430281787 1084.5595331231573 2 543.2867431640625 MULTI HCD FTMS 0 0 0 16816 78771.171875 0.7367111619006423 1 -0.0294647216796875 7 Unmodified _KPFEAFLSF_ ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 4 7 41.459 0 0 3.8226 0 0 572.2929443579744 0 572.2929443579744 0 34.291746928241125 0 0 0 1.305462187404089 0 0.4247425010840047 0 {M(Oxidation (M))|F}TV{M(Oxidation (M))|F} 3.8226 - 26 NaN NaN 105964.8 NaN 13246 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16824 71.876 NaN 139930 35 0 15298 0.263 + 23183 RFLDDLGLKF 10 60 408.56412671113674 1222.6705507336103 3 408.5639343261719 MULTI HCD FTMS 0 0 0 16816 37701.578125 0.01332212771092405 30 -0.854949951171875 8 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 13.51866281300042 0.3846630060559883 2 {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 5 5 16.963 0 0 1.3874 0 0 646.3073632391322 0 646.3073632391322 0 2.3586311141647798 0 0 0 1.0484550065040281 0 0 0 + {I|L}{[VA]|[{I|L}G]}K{M(Oxidation (M))|F} 1.3874 + + 36 NaN NaN 108701.1 NaN 13247 3575 16816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16826 71.881 NaN 6588400 35 0 880240 0.327 + 11792 KEGGCGEGA 9 86 404.1696931571729 806.3248333811458 2 404.1700744628906 MULTI HCD FTMS 0 0 0 16825 6842022 0.8170925856550196 -1 0.0294647216796875 1 Unmodified _KEGGCGEGA_ REV__ENST00000368324.4_1_1:155851301-155851535:+|nuORF 3.944395688203298 0.32111559684428237 2 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.15403766326835 0 449.15403766326835 0 -0.1671187774347498 -0.1671187774347498 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 74 NaN NaN 642998.5 NaN 13248 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16827 71.886 NaN 817780 35 0 118170 0.261 + 18124 MPDFDLHL 8 72 494.2338834211016 986.4532139090032 2 494.2337341308594 MULTI HCD FTMS 0 0 0 16825 322530.5 0.203190849905537 11 -0.317718505859375 2 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 77.98433622928108 0.02047850178800545 2 MPD{M(Oxidation (M))|F}D{I|L}H{I|L} 8 0 + 74.092 0 0 7.5109 7.5109 95.063 0 0 0 41.51863755803667 8.979400086720375 8.979400086720375 32.684465535402296 0 2.048455006504028 1.5228787452803376 0.3252574989159953 0 + + MPD{M(Oxidation (M))|F}D{I|L}H{I|L};[DP]{M(Oxidation (M))|F}DM{I|L}H{I|L};[DP]{M(Oxidation (M))|F}D{I|L}MH{I|L};[DP]{M(Oxidation (M))|F}D{I|L}HM{I|L};[DP]{M(Oxidation (M))|F}D{I|L}H{I|L}M 7.5109;4.1976;2.7707;2.1617;1.7582 +;-;-;-;- + 297 + NaN NaN 217475.6 NaN 13249 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16828 71.889 NaN 496960 35 0 106010 0.261 + 11998 KGAAVYFLF 9 65 508.2846038761109 1014.5546548190218 2 508.28436279296875 MULTI HCD FTMS 0 0 0 16825 187522.265625 0.34302471748408897 4 -0.111114501953125 3 Unmodified _KGAAVYFLF_ ENST00000394464.6_1_5:142780416-142782924:-|nuORF 26.88365393820708 0.12808753336095696 2 VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 4 42.713 0 0 4.21 0 0 327.19139296699376 0 327.19139296699376 0 20.17170683023597 0 0 0 1.5 0 0 0 + VY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.21 + + 101 NaN NaN 166556.5 NaN 13250 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16829 71.893 NaN 573000 35 0 236830 0.261 -1 0 50 645.3791740105518 644.3718975439517 1 645.3798217773438 MULTI HCD FTMS 0 0 0 16825 122482.703125 0.35986683964750105 4 -0.111114501953125 4 NaN NaN 2 H 1 -1 0.088644 0 0 0.013757 0 0 75.06514813164547 429.2268160455688 504.29196417721425 0 0 0 0 0 0 0 0 0 H 0.013757 - 9 + NaN NaN 175865.5 NaN 13251 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16830 71.896 NaN 302830 35 0 42107 0.262 + -1 YINCCGSNI 9 61 550.7274493043487 1099.4403456754974 2 550.727294921875 MULTI HCD FTMS 0 0 0 16825 72443.7890625 0.8130433555082939 1 -0.0294647216796875 5 2 Carbamidomethyl (C) _YINC(Carbamidomethyl (C))C(Carbamidomethyl (C))GSNI_ REV__CNBD1|p.G360C|1|0.44|ENSG00000176571|chr8:87351720-87351720|G/T|missense_variant;REV__ENSG00000176571|ENST00000518476|CNBD1 7.289230182591677 0.29575926068275815 2 DQC 3 -1 13.901 0 0 1.2644 0 0 0 750.3454073541624 750.3454073541624 -0.7918124604762493 0 -0.7918124604762493 0 0 0 0 0 0 DQC 1.2644 - 84 + NaN NaN 155112.6 NaN 13252 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16831 71.899 NaN 335330 35 0 57787 0.263 + 14729 LHNSLAPV 8 51 425.74204658384787 NaN 0 425.74224853515625 PEAK HCD FTMS 0 0 0 16825 68423.7109375 0.32190626170637054 4 -0.111114501953125 6 Unmodified _LHNSLAPV_ REV__ENST00000496359.5_1_10:81565841-81574436:-|nuORF 3.944395688203298 0.38822285293237185 2 Y 1 -1 5.4846 0 0 0.64564 0 0 551.3382363788302 132.04531274967033 683.3835491285005 0 0 0 0 0 0 0 0 0 Y 0.64564 - 11 + NaN NaN 139265.7 NaN 13253 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16832 71.903 NaN 190290 35 0 32014 0.261 + 28819 TTYKVNVF 8 54 486.2636897687012 970.5128266042025 2 486.2631530761719 MULTI HCD FTMS 0 0 0 16825 53321.8671875 0.6272064963649274 2 -0.0588226318359375 7 Unmodified _TTYKVNVF_ ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1 15.847184025352803 0.47719562709667024 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 36.198 0 0 3.7298 0 0 559.3356243110369 0 559.3356243110369 0 30.713337517843655 0 0 0 1 0 0 0 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.7298 - 27 + NaN NaN 119127.2 NaN 13254 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16833 71.906 NaN 146880 35 0 10473 0.261 + 29916 VFDTSIAQL 9 61 497.26584714579946 992.5171413583989 2 497.2665710449219 MULTI HCD FTMS 0 0 0 16825 39633.93359375 0.19920093744694212 4 -0.111114501953125 8 Unmodified _VFDTSIAQL_ ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 41.8396318013385 0.056899836730939755 2 T{[QC]|[C(Carbamidomethyl (C))A]}AQ{I|L} 6 5 35.877 0 0 3.6148 0 0 330.1899239296961 0 330.1899239296961 0 20.39258754269092 0 0 0 0.3494850021680094 0 1.1747425010840047 0 T{[QC]|[C(Carbamidomethyl (C))A]}AQ{I|L} 3.6148 - 66 NaN NaN 111880.3 NaN 13255 3576 16825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16835 71.911 NaN 2409200 35 0 422200 0.327 + 16107 LPTEAEFQL 9 86 524.2717561488396 1046.528959364479 2 524.2717895507812 MULTI HCD FTMS 0 0 0 16834 1599748.25 0.8974042424169328 2 -0.048858642578125 1 Unmodified _LPTEAEFQL_ ENSG00000183508|ENST00000369448|TENT5C 92.65332237495696 0.004456439685314431 2 EAE{M(Oxidation (M))|F}Q{I|L} 6 3 58.435 0 0 5.5837 0 0 311.18452651191564 0 311.18452651191564 0 34.69192053517357 0 0 0 1.9731975075880328 0 1.4802046884880937 0 + EAE{M(Oxidation (M))|F}Q{I|L} 5.5837 + + 915 NaN NaN 471390.1 NaN 13256 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16836 71.915 NaN 507590 35 0 80271 0.261 -1 MPDLDLNL 8 54 473.73125633104536 945.4479597288907 2 473.7310485839844 MULTI HCD FTMS 0 0 0 16834 504037.34375 0.6595142935697378 5 -0.13732147216796875 2 Oxidation (M) _M(Oxidation (M))PDLDLNL_ ENSG00000124942|ENST00000378024|AHNAK 57.47134341890925 0.0815142710316295 2 D{I|L}N{I|L} 4 -1 42.779 0 0 4.5248 0 0 472.19822890449376 0 472.19822890449376 0 23.086681479559203 0 0 0 0.7302046884880937 0 0.3807196863200844 0.4247425010840047 D{I|L}N{I|L} 4.5248 + + 77 NaN NaN 168980 NaN 13257 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16837 71.919 NaN 633650 35 0 141050 0.261 + 23461 RLPSSWALF 9 75 538.7976060005608 1075.5806590679215 2 538.7976684570312 MULTI HCD FTMS 0 0 0 16834 236287.609375 0.671370141587717 5 -0.13732147216796875 3 Unmodified _RLPSSWALF_ ENSG00000129636|ENST00000320640|ITFG1 29.081581746732265 0.1154664336125038 2 A{I|L}{M(Oxidation (M))|F} 3 6 40.445 0 0 3.7603 0 0 726.3820843473856 0 726.3820843473856 0 32.971062485323515 0 0 0 1.4247425010840047 0 0 0 + A{I|L}{M(Oxidation (M))|F} 3.7603 + + 96 NaN NaN 191742.5 NaN 13258 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16838 71.922 NaN 368850 35 0 48199 0.261 + 4423 EYGFISQTL 9 52 529.2640896427313 1056.5136263522625 2 529.2642822265625 MULTI HCD FTMS 0 0 0 16834 123653.0546875 0.6662963942111374 -3 0.08501434326171875 4 Unmodified _EYGFISQTL_ ENSG00000057704|ENST00000261226|TMCC3 55.50274090549119 0.023872834264864425 2 {I|L}SQT{I|L} 5 4 56.498 0 0 5.3476 0 0 496.195116111525 0 496.195116111525 0 49.508272069161734 0 0 0 1.774227503252014 0 0.3807196863200844 0 + {I|L}SQT{I|L} 5.3476 + + 123 NaN NaN 173098 NaN 13259 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16839 71.925 NaN 463640 35 0 64694 0.262 + 12867 KYFLWVVKF 9 56 410.57419450096904 1228.700754103107 3 410.57421875 MULTI HCD FTMS 0 0 0 16834 209369.171875 0.8847283125100567 -3 0.08501434326171875 5 Unmodified _KYFLWVVKF_ ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2 33.4449034751529 0.0954363425218424 2 WVVK{M(Oxidation (M))|F} 5 4 45.177 0 0 3.6768 0 0 551.3113737637433 0 551.3113737637433 0 36.59379381312206 0 0 0 1.5 0 0 0 + WVVK{M(Oxidation (M))|F} 3.6768 + + 140 + NaN NaN 178034.8 NaN 13260 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16840 71.929 NaN 458420 35 0 38807 0.261 -1 VYNPMPFEL 9 77 563.2681763452786 1124.521799757357 2 563.2678833007812 MULTI HCD FTMS 0 0 0 16834 45085.4375 0.5618481865664318 2 -0.048858642578125 6 Oxidation (M) _VYNPM(Oxidation (M))PFEL_ ENSG00000167632|ENST00000438773|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9 9.38312468134398 0.279288223203164 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT 8 -1 23.867 0 0 2.1224 0 0 0 163.0063577418355 163.0063577418355 -0.5971780329043881 0 -0.5971780329043881 0 0 0 0 0.3054621874040891 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT 2.1224 - 500 NaN NaN 175638.1 NaN 13261 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16841 71.932 NaN 453550 35 0 18652 0.261 + 6044 FPDTPLEEW 9 98 567.260349979118 1132.506147025036 2 567.2797241210938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _FPDTPLEEW_ ENSG00000162779|ENST00000367618|AXDND1 18.13498045792455 0.20367413111508956 2 {M(Oxidation (M))|F}PEE{I|L}[EP]SW 9 5 + 40.385 0 0 3.566 3.566 84.05 0 0 0 14.744237387763093 14.82141851178169 14.744237387763093 8.520599913279618 0 0.25 0 0.9247425010840047 0 {M(Oxidation (M))|F}PEE{I|L}[EP]SW;{M(Oxidation (M))|F}PEE{I|L}T[DP]W;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}T]A{M(Oxidation (M))|F};[MT]K[C(Carbamidomethyl (C))Q][{M(Oxidation (M))|F}T]A{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DG]Q[KS]EPE;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EEPE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]W;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VP][WD]V[C(Carbamidomethyl (C))N];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VP]{[QN]|[E{I|L}]|[KN]}W[MD];{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T] 3.566;2.8136;1.9705;1.6832;1.395;1.3382;1.1163;0.32102;0.16553;0.16441 -;-;-;-;-;-;-;-;-;- 390 + NaN NaN 163232.1 NaN 13262 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16842 71.935 NaN 104140 35 0 4614.9 0.261 + -1 CCCCCFCCC 9 48 638.139892578125 NaN 0 638.139892578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))FCCC_ REV__ENSG00000163793|ENST00000296097|DNAJC5G 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 125412 NaN 13263 3577 16834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16844 71.94 NaN 12767000 35 0 2108600 0.327 + 6155 FPEHIFPAL 9 106 535.7874179887401 1069.5602830442801 2 535.787841796875 MULTI HCD FTMS 0 0 0 16843 7665649.5 0.4788616277741949 6 -0.17704010009765625 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 131.29775728308752 0.0005262696486345744 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 76.005 0 0 7.1062 7.1062 88.684 0 0 0 17.77233639823401 44.1621439610051 17.77233639823401 6.81749681984067 0 2.2051120522087033 1.3010299956639813 0.8882104921644451 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L};[EP]H{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}A{M(Oxidation (M))|F}P{I|L} 7.1062;6.4688;6.1603;5.969;5.4087;5.3686;5.256;5.0923;4.9646;4.8099 +;-;-;-;-;-;-;-;-;- + 4200 NaN NaN 641213.8 NaN 13264 3578 16843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16845 71.945 NaN 2266000 35 0 582870 0.26 + -1 ATHMHLHLLF 10 84 618.3213275062147 1234.6281020792294 2 618.3211669921875 MULTI HCD FTMS 0 0 0 16843 1290488.5 0.1796283990505848 6 -0.17704010009765625 2 Oxidation (M) _ATHM(Oxidation (M))HLHLLF_ REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|0|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|3 10.073929032068715 0.4168838835836452 2 YYPEYK{I|L} 7 -1 71.629 0 0 5.8017 0 0 0 275.14011560611567 275.14011560611567 38.756565231880984 0 0 0 0 2.4916440611282624 2 0.3252574989159953 0 YYPEYK{I|L} 5.8017 - 548 + NaN NaN 435123.1 NaN 13265 3578 16843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16846 71.948 NaN 185250 35 0 20923 0.263 + 9718 HWHPDPAL 8 52 486.737468297441 971.460383661682 2 486.7378845214844 MULTI HCD FTMS 0 0 0 16843 56988.703125 0.5562183986488289 -2 0.0588226318359375 3 Unmodified _HWHPDPAL_ ENST00000336138.3_1_8:143816880-143817129:+|nuORF 10.183394434864962 0.5188676124868831 2 E{I|L} 2 7 20.261 0 0 2.0856 0 0 711.3243885724625 0 711.3243885724625 0 0.7800024444570397 0 0 0 0 0 0.3807196863200844 0 E{I|L} 2.0856 - 71 NaN NaN 121308.1 NaN 13266 3578 16843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16847 71.951 NaN 157790 35 0 9037 0.261 + 32678 WPFQGTIRL 9 58 559.3110692565587 1116.6075855799172 2 559.3106689453125 MULTI HCD FTMS 0 0 0 16843 48869.43359375 0.6154133848177659 -2 0.0588226318359375 4 Unmodified _WPFQGTIRL_ ENSG00000175104|ENST00000526995|TRAF6 11.494710602746466 0.2610445893512368 2 WP{M(Oxidation (M))|F}[Q{I|L}]{[SA]|[TG]}R{I|L} 9 2 + 31.071 0 0 2.7827 2.7827 88.374 0 0 0 18.719836640438828 4.873402305921687 4.873402305921687 31.071289888805623 0 0.3054621874040891 0 0.23965182871044374 0.4247425010840047 WP{M(Oxidation (M))|F}[Q{I|L}]{[SA]|[TG]}R{I|L} 2.7827 - 16 + NaN NaN 113678.6 NaN 13267 3578 16843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16848 71.955 NaN 494460 35 0 42492 0.261 + -1 MWPSLKSIF 9 79 562.7932995845082 1123.5720462358163 2 562.7935791015625 MULTI HCD FTMS 0 0 0 16843 106749.875 0.3214002378515084 -3 0.088287353515625 5 Oxidation (M) _M(Oxidation (M))WPSLKSIF_ REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF 17.11289562659939 0.2125047172822487 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT{M(Oxidation (M))|F} 9 -1 + 75.672 0 0 6.7349 6.7349 93.007 0 0 0 2.0074990971912854 60.723506410013215 2.0074990971912854 24.235162698957282 0 3.2302046884880937 0 0.3807196863200844 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}W{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};GY[{I|L}P]{[CP]|[EA]}KVT{M(Oxidation (M))|F};[RH]H{[CP]|[EA]}KVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}[DV][KA]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}[DV][TA]K{M(Oxidation (M))|F} 6.7349;4.578;3.9673;3.8105;3.6017;2.8888 -;-;-;-;-;- 286 NaN NaN 172988.5 NaN 13268 3578 16843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16850 71.96 NaN 3974300 35 0 1465700 0.327 + 8405 GYPLWKVTF 9 112 555.8025935526008 1109.5906341720015 2 555.802734375 MULTI HCD FTMS 0 0 0 16849 2282477 0.6806061376830145 -4 0.1077880859375 1 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 103.35351024395868 0.004027461563756449 2 [YG]P{I|L}WKVT{M(Oxidation (M))|F} 9 0 + 107.14 0 0 9.6562 9.6562 97.796 0 0 0 7.467815363939053 7.467815363939053 7.467815363939053 32.952365428979334 0 3.1861818737241734 2 0.9698565171985375 0 + + [YG]P{I|L}WKVT{M(Oxidation (M))|F};[YG]P{I|L}W{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};[{I|L}P]GYWKVT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]WKVT{M(Oxidation (M))|F};[YG]P{I|L}T{[RE]|[WV]}K{M(Oxidation (M))|F};[YG]P{I|L}W[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]};[{I|L}P]W[YG]KVT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]TGRVT{M(Oxidation (M))|F};[{I|L}P]GYW{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};[YG]P{I|L}T[W{M(Oxidation (M))|F}]{[QV]|[N{I|L}]|[RA]|[KV]} 9.6562;6.6864;6.0684;5.6495;5.4023;5.0091;4.5388;4.2529;3.7717;3.7251 +;-;-;-;-;-;-;-;-;- + 4108 + NaN NaN 687883.6 NaN 13269 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16851 71.964 NaN 1196200 35 0 106920 0.261 + 21542 PYLGKYKAGF 10 105 572.3137601846748 1142.6129674361496 2 572.3260498046875 MULTI HCD FTMS 0 0 0 16849 42402.4453125 0.8647688057487749 3 -0.08846282958984375 2 Unmodified _PYLGKYKAGF_ ENSG00000138356|ENST00000374700|AOX1 12.531546534597751 0.39389615866941496 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 8 7 51.45 0 0 4.5029 0 0 0 128.04699825406888 128.04699825406888 -1.7249938067877224 0 -1.7249938067877224 0 0 0 1.6989700043360187 0.5866968715561641 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YSK{M(Oxidation (M))|F}{I|L}{I|L} 4.5029 - 1308 NaN NaN 288703.1 NaN 13270 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16852 71.968 NaN 365100 35 0 33020 0.261 + 13283 KYMDINFDF 9 64 596.7711176425278 1191.5276823518554 2 596.7710571289062 MULTI HCD FTMS 0 0 0 16849 389815.5 0.11858579739047088 7 -0.2098541259765625 3 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 57.107585691075435 0.021627766313179933 2 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 66.604 0 0 5.5898 0 0 422.1982594220719 0 422.1982594220719 0 55.23123798847138 0 0 0 2.1861818737241734 0 0 0.7742275032520141 + D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.5898 + + 632 NaN NaN 159396.5 NaN 13271 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16853 71.971 NaN 587050 35 0 41431 0.261 + 13190 KYLTEGLLQF 10 90 606.3371186913156 1210.659684449431 2 606.3372192382812 MULTI HCD FTMS 0 0 0 16849 315230.15625 0.05174509839246051 14 -0.40303802490234375 4 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 37.771325159832564 0.16474695691370878 2 TEAV{I|L}Q{M(Oxidation (M))|F} 7 5 61.406 0 0 5.0721 0 0 404.24226576972814 0 404.24226576972814 0 37.84903859726029 0 0 0 1.6747425010840047 0 0.6109243748081782 0 TEAV{I|L}Q{M(Oxidation (M))|F} 5.0721 - 448 NaN NaN 183235.3 NaN 13272 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16854 71.974 NaN 1044000 35 0 72574 0.261 + 12870 KYFLWVVKF 9 92 615.3579212512977 1228.7012895693954 2 615.357666015625 MULTI HCD FTMS 0 0 0 16849 407668.71875 1 0 0 5 Unmodified _KYFLWVVKF_ ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2 69.33821966488729 0.009302356455414924 2 [YN]AWVYYH 8 6 59.621 0 0 4.8523 0 0 0 129.202704701827 129.202704701827 2.961828035514948 0 0 0 0 0 1.6989700043360187 0 1.5030834337684311 [YN]AWVYYH 4.8523 - 798 NaN NaN 253422 NaN 13273 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16855 71.978 NaN 222890 35 0 12564 0.261 -1 QYQIIMTMI 9 68 586.7898999324784 1171.5652469317567 2 586.7909545898438 MULTI HCD FTMS 0 0 0 16849 88439.84375 0.34617318438658423 6 -0.17706298828125 6 2 Oxidation (M) _QYQIIM(Oxidation (M))TM(Oxidation (M))I_ ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2 13.042465956692817 0.2476723265019929 2 NWG{M(Oxidation (M))|F} 4 -1 32.423 0 0 2.7675 0 0 649.348436424025 0 649.348436424025 0 11.453650195120844 0 0 0 1 0 0 0 NWG{M(Oxidation (M))|F} 2.7675 - 131 NaN NaN 138734.9 NaN 13274 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16856 71.981 NaN 223360 35 0 17218 0.261 -1 0 68 631.353769830526 630.3464933639259 1 631.3535766601562 MULTI HCD FTMS 0 0 0 16849 53826.59765625 0.4150327376149422 7 -0.2098541259765625 7 NaN NaN 2 [YN]{I|L} 3 -1 23.952 0 0 3.7999 0 0 0 237.13427957902277 237.13427957902277 13.494850021680092 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 3.7999 - 11 NaN NaN 125785.3 NaN 13275 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16857 71.984 NaN 230560 35 0 20260 0.261 + 7171 FSIEQVLGAFG 11 70 584.3076374877185 NaN 0 584.2904052734375 PEAK HCD FTMS 0 0 0 16849 27276.146484375 0.9074592054295552 -1 0.019500732421875 8 Unmodified _FSIEQVLGAFG_ REV__ENSG00000150753|ENST00000280326|CCT5;REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF;REV__nc|ENSG00000150753|P48643-2|CCT5 12.240655878213236 0.3073969278659688 2 KY{M(Oxidation (M))|F}C 4 -1 15.433 0 0 1.3229 0 0 165.11407844317768 457.22076993169725 622.3348483748749 0 0 0 0 0 0 0 0 0 KY{M(Oxidation (M))|F}C 1.3229 - 99 + NaN NaN 140433.5 NaN 13276 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16858 71.987 NaN 119640 35 0 24564 0.262 + 20881 PIPYSSSTL 9 40 482.75342076692334 963.4922886006467 2 482.28717041015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _PIPYSSSTL_ ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-2|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 9 13.495 0 0 1.4006 0 0 798.4135512733014 0 798.4135512733014 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4006 - 5 + NaN NaN 115284.1 NaN 13277 3579 16849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16860 71.992 NaN 2065100 35 0 403830 0.326 + 12686 KWLLYPTEI 9 93 581.8290189200499 1161.6434849068996 2 581.8291625976562 MULTI HCD FTMS 0 0 0 16859 682649.8125 0.530532590284408 3 -0.08518218994140625 1 Unmodified _KWLLYPTEI_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 99.75527289724121 0.004270341300239591 2 [WK]{I|L}{I|L}YPTE{I|L} 9 0 + 74.848 0 0 6.4433 6.4433 87.729 0 0 0 5.999161495794425 38.43031495462781 5.999161495794425 7.486512420283233 0 2.579689690656103 0 0.4247425010840047 0.2742275032520141 + + [WK]{I|L}{I|L}YPTE{I|L};[W{I|L}]K{I|L}YPTE{I|L};[TP]E{I|L}Y{I|L}[WK]{I|L};[TP]EY{I|L}{I|L}[WK]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}A{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KA]E{I|L};{[ET]|[MV]}P{I|L}Y{I|L}[WK]{I|L};[VP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}[KG]E{I|L};{[ET]|[MV]}PY{I|L}{I|L}[WK]{I|L};[TP]E{I|L}Y{I|L}[W{I|L}]K;[TP]EY{I|L}{I|L}[W{I|L}]K 6.4433;5.7988;2.7292;2.4701;2.3464;2.2302;2.0014;1.9711;1.8453;1.5862 +;-;-;-;-;-;-;-;-;- + 1436 NaN NaN 399470.3 NaN 13278 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16861 71.997 NaN 1180100 35 0 221580 0.261 -1 0 68 595.3108134097679 1782.9106108295036 3 595.6449584960938 MULTI HCD FTMS 0 0 0 16859 211218.046875 0.4384049672829718 3 -0.08518218994140625 2 NaN NaN 2 AGQR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 8 -1 83.837 0 0 4.7023 0 0 816.4156901498031 0 816.4156901498031 0 73.33526622599813 0 0 0 2.916386562212267 0 0 0.3807196863200844 AGQR{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F} 4.7023 - 1070 NaN NaN 279934.1 NaN 13279 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16862 72 NaN 679600 35 0 120450 0.263 + 15945 LPPGEWEL 8 70 470.7424453859744 939.4703378387488 2 470.74224853515625 MULTI HCD FTMS 0 0 0 16859 307212.5625 0.9467318506905138 3 -0.08518218994140625 3 Unmodified _LPPGEWEL_ ENSG00000163362|ENST00000413687|INAVA;ENST00000487626.1_1_3:111904329-111904731:-|nuORF;nc|ENSG00000163362|Q3KP66|INAVA 18.13498045792455 0.4603629008820478 2 EWE{I|L} 4 4 31.96 0 0 3.4019 0 0 364.21052748847814 0 364.21052748847814 0 24.9704350275697 0 0 0 0.4247425010840047 0 0 0 + EWE{I|L} 3.4019 + + 128 NaN NaN 199575.2 NaN 13280 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16863 72.004 NaN 209400 35 0 33279 0.261 + 4849 FAALVLCPTEL 11 55 588.8197858551081 1175.625018777016 2 588.81884765625 MULTI HCD FTMS 0 0 0 16859 98895.9765625 0.6216987241475875 1 -0.026153564453125 4 Unmodified _FAALVLCPTEL_ ENSG00000102743|ENST00000338625|SLC25A15 34.40172386719151 0.17300472122796048 2 TP[QP]{I|L}{M(Oxidation (M))|F}T{I|L} 8 8 57.626 0 0 4.9017 0 0 260.1373768537125 0 260.1373768537125 0 52.14123782136497 0 0 0 1.25 0 0.8494850021680094 0 TP[QP]{I|L}{M(Oxidation (M))|F}T{I|L} 4.9017 - 205 NaN NaN 121865.8 NaN 13281 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16864 72.007 NaN 448990 35 0 30916 0.261 + 10192 IFVYENPISL 10 81 597.8238775871345 1193.6332022410688 2 597.8238525390625 MULTI HCD FTMS 0 0 0 16859 104548.0546875 0.6962150303127418 3 -0.08518218994140625 5 Unmodified _IFVYENPISL_ ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2 8.155526934196011 0.43213520406898465 2 D{M(Oxidation (M))|F}NK{M(Oxidation (M))|F}N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 8 7 32.332 0 0 2.7087 0 0 166.18481352185864 0 166.18481352185864 0 11.006244181683655 0 0 0 0 0 0 0.6237125054200234 D{M(Oxidation (M))|F}NK{M(Oxidation (M))|F}N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 2.7087 - 764 + NaN NaN 156299.9 NaN 13282 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16865 72.01 NaN 694450 35 0 103990 0.261 + 13942 KYQYWAVVF 9 64 602.3136373386429 1202.6127217440858 2 602.313720703125 MULTI HCD FTMS 0 0 0 16859 151422.578125 0.05807185997065776 -6 0.16666412353515625 6 Unmodified _KYQYWAVVF_ ENSG00000135845|ENST00000344529|PIGC;PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant 57.47134341890925 0.0211188941628804 2 YWAVV{M(Oxidation (M))|F} 6 3 66.146 0 0 5.5002 0 0 419.21776015449376 0 419.21776015449376 0 57.91956270212445 0 0 0 2.3494850021680094 0 0 0 + YWAVV{M(Oxidation (M))|F} 5.5002 + + 427 NaN NaN 190580.4 NaN 13283 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16866 72.014 NaN 210350 35 0 15950 0.261 + 32641 WLYSVPWGF 9 76 577.7855369337191 1153.556520934238 2 577.78515625 MULTI HCD FTMS 0 0 0 16859 56655.3515625 0.15714331715127325 8 -0.22954559326171875 7 Unmodified _WLYSVPWGF_ ENSG00000188501|ENST00000695545|LCTL;nc|ENSG00000188501|Q6UWM7-2|LCTL 11.640296217721598 0.25978676193971967 2 {I|L}EWG{M(Oxidation (M))|F} 5 5 45.701 0 0 3.9618 0 0 503.24165541816564 0 503.24165541816564 0 29.995367849778773 0 0 0 0.9247425010840047 0 0 0 {I|L}EWG{M(Oxidation (M))|F} 3.9618 - 595 NaN NaN 134349.5 NaN 13284 3580 16859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16868 72.019 NaN 2404100 35 0 329970 0.327 -1 PDGSSKGC 8 79 404.1696931571729 806.3248333811458 2 404.17010498046875 MULTI HCD FTMS 0 0 0 16867 2451251 0.2927349572508613 4 -0.1181182861328125 1 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.1544144637131 0 449.1544144637131 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 3 NaN NaN 461361.9 NaN 13285 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16869 72.023 NaN 278620 35 0 23202 0.261 + 30729 VPINVVETL 9 42 492.29237186406556 982.5701907949311 2 492.2922668457031 MULTI HCD FTMS 0 0 0 16867 153479.984375 0.19062370413702726 6 -0.180450439453125 2 Unmodified _VPINVVETL_ ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4-3|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 45.69961567697781 0.039180348357221985 2 VET{I|L} 4 5 50.745 0 0 5.1646 0 0 522.3166406137588 0 522.3166406137588 0 29.776296993281406 0 0 0 1.5 0 0.3807196863200844 0 + VET{I|L} 5.1646 + + 45 NaN NaN 135900.8 NaN 13286 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16870 72.027 NaN 306940 35 0 39691 0.261 + 14289 LDDIFDLH 8 65 494.2449245943416 NaN 0 494.2341003417969 PEAK HCD FTMS 0 0 0 16867 7650.04638671875 0.8306434818273452 -1 0.026153564453125 3 Unmodified _LDDIFDLH_ REV__ENSG00000138593|ENST00000559471|SECISBP2L;REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF;REV__nc|ENSG00000138593|Q93073-2|SECISBP2L;REV__SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant 8.593279151180031 0.38822285293237185 2 PD 2 -1 12.519 0 0 1.269 0 0 131.06085044489026 640.3123262994749 771.3731767443651 0 0 0 0 0 0 0 0.3054621874040891 0 PD 1.269 - 56 + NaN NaN 139703.3 NaN 13287 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16871 72.03 NaN 319020 35 0 62315 0.261 + -1 LRRSCQAL 8 57 502.27731710379317 1002.5400812743864 2 502.2771301269531 MULTI HCD FTMS 0 0 0 16867 127580.0625 0.11721843626061151 9 -0.25240325927734375 4 Carbamidomethyl (C) _LRRSC(Carbamidomethyl (C))QAL_ REV__ENST00000361906.7_1_22:38616937-38617486:-|nuORF 26.88365393820708 0.39599352634412927 2 {I|L}TA{I|L} 4 -1 40.499 0 0 4.0397 0 0 586.278612205275 0 586.278612205275 0 25.322019340406747 0 0 0 1.1549471895720984 0 0.4247425010840047 0 {I|L}TA{I|L} 4.0397 - 60 NaN NaN 140911.7 NaN 13288 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16872 72.033 NaN 371930 35 0 51252 0.261 -1 SMTRYFYLF 9 69 622.2946879862326 1242.574823039265 2 622.2955322265625 MULTI HCD FTMS 0 0 0 16867 133458.09375 0.056498963225406186 -13 0.35041046142578125 5 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 36.12702656103203 0.08312389501731911 2 [Y{I|L}][WH]{[DS]|[MA]|[CV]|TT}Y{I|L}{M(Oxidation (M))|F} 9 -1 + 45.053 0 0 3.6257 3.6257 82.079 0 0 0 3.4887885044031037 14.171594892378074 3.4887885044031037 3.4887885044031037 0 1.25 1.2218487496163564 0.7614393726401688 0 [Y{I|L}][WH]{[DS]|[MA]|[CV]|TT}Y{I|L}{M(Oxidation (M))|F};[YN]A[PA]M[PG]Y{I|L}{M(Oxidation (M))|F};[YN]AKK{M(Oxidation (M))|F}YY{M(Oxidation (M))|F};[Y{I|L}]SQ[WP]CS{I|L}{M(Oxidation (M))|F};[Y{I|L}]SQ{[CP]|[EA]}WS{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[YC]|[HE]}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]SWAAWS{I|L}{M(Oxidation (M))|F};[YE]AW[KP]CS{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}{[NV]|[RG]}QAHH 3.6257;3.345;2.5713;2.3888;1.6209;1.5819;1.2046;0.87163;0.79558 -;-;-;-;-;-;-;-;- 508 NaN NaN 148422.8 NaN 13289 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16873 72.037 NaN 142280 35 0 16609 0.261 + 6323 FPFTATFYV 9 46 546.775787349872 1091.5370217665438 2 546.76416015625 MULTI HCD FTMS 0 0 0 16867 13115.482421875 0.2384869622016501 6 -0.180450439453125 6 Unmodified _FPFTATFYV_ REV__ENSG00000131389|ENST00000622186|SLC6A6;REV__SLC6A6|p.A255T|1|0.29|ENSG00000131389|chr3:14466546-14466546|G/A|missense_variant 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 20.969 0 0 1.9211 0 0 847.3358338359351 0 847.3358338359351 0 12.897131498072126 0 0 0 0 0 0 0 {I|L}{I|L} 1.9211 - 24 NaN NaN 121955.4 NaN 13290 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16874 72.04 NaN 134230 35 0 18188 0.261 + 23533 RNNPRSTL 8 44 479.2662148893488 956.5178768454977 2 479.2659912109375 MULTI HCD FTMS 0 0 0 16867 37027.2734375 0.7965100039964224 1 -0.02951812744140625 7 Unmodified _RNNPRSTL_ ENST00000395715.7_1_8:116680788-116680932:-|nuORF 6.723162845929126 0.5320176132289695 2 VST{I|L} 4 5 24.931 0 0 2.6065 0 0 538.2738514630875 0 538.2738514630875 0 17.69088603307759 0 0 0 0.5 0 0 0 VST{I|L} 2.6065 - 13 NaN NaN 130607.4 NaN 13291 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16875 72.043 NaN 121520 35 0 12821 0.261 + 17102 LYLEQQVQF 9 49 584.3076374877185 NaN 0 584.2889404296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LYLEQQVQF_ ENSG00000130340|ENST00000392185|SNX9 9.38312468134398 0.24977752951804 2 S 1 9 14.49 0 0 1.242 0 0 873.4634672588369 203.08266626529533 1076.5461335241323 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 S 1.242 - 16 + NaN NaN 120771.2 NaN 13292 3581 16867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16877 72.048 NaN 228240 35 0 22748 0.327 + 7334 FVAPSDIQL 9 60 495.2688967783841 988.5232406235682 2 495.2690124511719 MULTI HCD FTMS 0 0 0 16876 81854.203125 0.7554211089875917 3 -0.08860015869140625 1 Unmodified _FVAPSDIQL_ ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant 39.94969957227396 0.06557568441294001 2 {I|L}Q{I|L} 3 6 32.435 0 0 3.2812 0 0 616.2860149247804 0 616.2860149247804 0 15.228787452803374 0 0 0 0.9247425010840047 0 0 0 + {I|L}Q{I|L} 3.2812 + + 26 NaN NaN 133149.5 NaN 13293 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16878 72.052 NaN 300290 35 0 34771 0.261 + 2620 DVAFTDPTL 9 52 489.7427489447271 977.4709449562542 2 489.7427978515625 MULTI HCD FTMS 0 0 0 16876 84529.8359375 0.6859293255287386 -2 0.05567169189453125 2 Unmodified _DVAFTDPTL_ ENSG00000151689|ENST00000392329|INPP1 85.27202061508552 0.004649858145912257 2 [DV]A{M(Oxidation (M))|F}TD 6 3 68.421 0 0 6.9998 0 0 0 326.1720064752563 326.1720064752563 53.71645960868548 0 0 0 0 1.8494850021680094 2 1.2302046884880937 0 + [DV]A{M(Oxidation (M))|F}TD 6.9998 + + 124 + NaN NaN 137781.2 NaN 13294 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16879 72.056 NaN 190140 35 0 16259 0.261 + 32684 WPIEGEEL 8 53 486.737468297441 971.460383661682 2 486.736572265625 MULTI HCD FTMS 0 0 0 16876 57417.3671875 0.5604022250096267 2 -0.0690765380859375 3 Unmodified _WPIEGEEL_ REV__ENSG00000181191|ENST00000374571|PJA1;REV__ENSG00000198961|ENST00000361189|PJA2;REV__nc|ENSG00000181191|Q8NG27-2|PJA1;REV__nc|ENSG00000181191|Q8NG27|PJA1;REV__nc|ENSG00000198961|O43164-2|PJA2 19.438996006549623 0.45076845602799126 2 E{I|L} 2 -1 25.261 0 0 2.6003 0 0 711.3250887618387 0 711.3250887618387 0 8.2711470149615 0 0 0 0.3494850021680094 0 0.3807196863200844 0 E{I|L} 2.6003 + + 37 NaN NaN 115504.2 NaN 13295 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16880 72.059 NaN 301890 35 0 67032 0.261 + 8055 GHLGPVTAV 9 47 425.74204658384787 NaN 0 425.7420349121094 PEAK HCD FTMS 0 0 0 16876 25047.427734375 0.11783815459377828 10 -0.28170013427734375 4 Unmodified _GHLGPVTAV_ ENSG00000184465|ENST00000448612|WDR27;ENST00000496752.1_1_6:170065563-170070787:-|nuORF;nc|ENSG00000184465|A2RRH5|WDR27 2.0597508629832335 0.2852655770354268 2 Q 1 9 2.4743 0 0 0.29127 0 0 489.29349760929887 229.09763513736564 718.3911327466645 0 0 0 0 0 0 0 0 0 Q 0.29127 - 2 + NaN NaN 144648.2 NaN 13296 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16881 72.063 NaN 486120 35 0 116650 0.261 + 7903 FYVPAEPKLAF 11 63 641.3478634252766 1280.6811739173531 2 641.34765625 MULTI HCD FTMS 0 0 0 16876 71688.1875 0.2310686672280487 -4 0.10796356201171875 5 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 29.43715596616401 0.20497810090165547 2 [YV]RREAPV 8 8 35.583 0 0 2.7785 0 0 0 307.1097336553708 307.1097336553708 19.129712596891153 0 0 0 0 1 1.6989700043360187 0 0 [YV]RREAPV 2.7785 - 144 NaN NaN 177888.2 NaN 13297 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16882 72.066 NaN 636630 35 0 60648 0.262 + 3059 EAFVWEPAM 9 88 548.2445871423743 1094.4746213515484 2 548.2453002929688 MULTI HCD FTMS 0 0 0 16876 64876.39453125 0.17511803553841226 -9 0.24920654296875 6 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 68.08070601005525 0.009709267492204555 2 TNVWEPA{M(Oxidation (M))|F} 8 3 54.365 0 0 4.9672 0 0 132.04219844443213 0 132.04219844443213 0 42.89356461388314 0 0 0 2.0501648626366045 0 0.3252574989159953 0 TNVWEPA{M(Oxidation (M))|F} 4.9672 - 1056 + NaN NaN 195033.3 NaN 13298 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16883 72.069 NaN 197470 35 0 20993 0.261 + 11999 KGAAVYFLF 9 42 508.28426592500824 NaN 0 508.28369140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KGAAVYFLF_ ENST00000394464.6_1_5:142780416-142782924:-|nuORF 16.942295170755138 0.2079222001251384 2 {I|L} 1 8 16.237 0 0 1.6004 0 0 165.0798384030357 733.3664932735909 898.4463316766266 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.6004 + + 11 + NaN NaN 119788.3 NaN 13299 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16884 72.073 NaN 123030 35 0 24274 0.261 + 15772 LPGEDWVF 8 42 481.73341796551614 NaN 0 481.7334899902344 PEAK HCD FTMS 0 0 0 16876 26371.287109375 0.49128190234368346 9 -0.26212310791015625 8 Unmodified _LPGEDWVF_ ENSG00000104522|ENST00000425753|GFUS;ENST00000529899.1_1_8:144698125-144699659:-|nuORF;ENST00000531006.1_1_8:144698735-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENST00000532308.5_1_8:144696774-144699659:-|nuORF 20.871210003555333 0.3841330378571171 2 P 1 7 11.99 0 0 1.247 0 0 113.08509725093468 748.2923583619532 861.377455612888 0 0 0 0 0 0.5 0 0 0 + P 1.247 + + 5 + NaN NaN 99565.6 NaN 13300 3582 16876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16886 72.078 NaN 7045700 35 0 1185200 0.327 + 6156 FPEHIFPAL 9 111 535.7874179887401 1069.5602830442801 2 535.78759765625 MULTI HCD FTMS 0 0 0 16885 3505824.5 0.2190035986853629 11 -0.311309814453125 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 131.29775728308752 0.0005262696486345744 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L} 9 0 + 84.707 0 0 7.9198 7.9198 92.632 0 0 0 18.65279269351241 56.25853508964033 18.65279269351241 9.2478773067036 0 2.265871564380277 1.3010299956639813 0.9194451763165201 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}AP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}P{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}{I|L}AP;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}AP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}{M(Oxidation (M))|F}A{I|L}P;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}PA{I|L}{M(Oxidation (M))|F};[EP]{M(Oxidation (M))|F}H{I|L}{M(Oxidation (M))|F}PA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EH{I|L}A{M(Oxidation (M))|F}P{I|L} 7.9198;7.0551;6.7206;6.3646;6.0429;5.9664;5.9408;5.8383;5.7255;5.4577 +;-;-;-;-;-;-;-;-;- + 5896 NaN NaN 1029611.4 NaN 13301 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16887 72.082 NaN 670190 35 0 83358 0.261 + -1 LDCLRTVTF 9 84 562.7932995845082 1123.5720462358163 2 562.7921142578125 MULTI HCD FTMS 0 0 0 16885 290264.78125 0.873922988047209 2 -0.05908966064453125 2 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))LRTVTF_ REV__nc|ENSG00000105325|Q9UM11-3|FZR1 29.081581746732265 0.1154664336125038 2 P{I|L}WKVT{M(Oxidation (M))|F} 7 -1 81.956 0 0 7.2943 0 0 234.06635302070646 0 234.06635302070646 0 65.75843240721518 0 0 0 3.1237125054200234 0 0.3252574989159953 0 P{I|L}WKVT{M(Oxidation (M))|F} 7.2943 - 477 + NaN NaN 183333.3 NaN 13302 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16888 72.086 NaN 894760 35 0 76994 0.261 -1 FSNVMLQDMQ 10 92 614.772470210779 NaN 0 614.7927856445312 PEAK HCD FTMS 0 0 0 16885 8455.16015625 1 0 0 3 Oxidation (M) _FSNVM(Oxidation (M))LQDMQ_ ENSG00000163531|ENST00000339876|NFASC;ENST00000404977.6_1_1:204797788-204937064:+|nuORF;ENST00000514644.5_1_1:204840022-204943419:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-2|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856|NFASC 18.1463463914782 0.29565035219289926 2 YAWV{[DS]|[MA]|[CV]|TT}N 7 -1 22.228 0 0 1.8108 0 0 114.00417039147335 275.13959680728755 389.1437671987609 0 0 0 0 0 0 0 0.28872548999643577 0.5 YAWV{[DS]|[MA]|[CV]|TT}N 1.8108 - 677 + NaN NaN 233534.9 NaN 13303 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16889 72.089 NaN 325580 35 0 47953 0.262 + 4086 ESPEVVFQL 9 50 524.2717561488396 1046.528959364479 2 524.2715454101562 MULTI HCD FTMS 0 0 0 16885 145920 0.08185614646146908 8 -0.23261260986328125 4 Unmodified _ESPEVVFQL_ REV__CENPC|p.S868Lfs*5|1|0.3|ENSG00000145241|chr4:67490035-67490035|A/-|frameshift_variant;REV__ENSG00000145241|ENST00000273853|CENPC;REV__ENST00000510189.5_1_4:68359569-68411187:-|nuORF;REV__nc|ENSG00000145241|Q03188-2|CENPC 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}Q{I|L} 3 -1 34.45 0 0 3.2919 0 0 640.3068963135505 0 640.3068963135505 0 18.96591250700361 0 0 0 0.8252574989159953 0 0 0 {M(Oxidation (M))|F}Q{I|L} 3.2919 + + 84 NaN NaN 141256.2 NaN 13304 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16890 72.092 NaN 601370 35 0 69983 0.261 + 32877 WYGYHFPEL 9 84 606.2802784724801 1210.54600401176 2 606.2800903320312 MULTI HCD FTMS 0 0 0 16885 183598.234375 0.8293959399272253 -1 0.029510498046875 5 Unmodified _WYGYHFPEL_ ENSG00000101361|ENST00000329276|NOP56;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENST00000484998.5_1_20:2635830-2636687:+|nuORF 67.34385681178166 0.00994769994983633 2 [WY]GYH{M(Oxidation (M))|F}PE{I|L} 9 0 + 53.2 0 0 4.3947 4.3947 88.389 0 0 0 9.555431996201364 13.541557652856163 9.555431996201364 15.76606256887672 0 1.5629529932484498 2 0 0 + + [WY]GYH{M(Oxidation (M))|F}PE{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}MYH{M(Oxidation (M))|F}PE{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}YH{M(Oxidation (M))|F}PE{I|L};WY[C(Carbamidomethyl (C))N]RR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{M(Oxidation (M))|F}E]D{I|L}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}D]|MM}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}PE{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KT]H[C(Carbamidomethyl (C))D]Y{I|L};{[QN]|[E{I|L}]|[KN]}[YV]H[C(Carbamidomethyl (C))D]Y{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KT]H[YG]Y[PA];[VS][DC]TE[RV][R{M(Oxidation (M))|F}] 4.3947;3.0923;3.0923;2.1623;1.9671;1.8514;1.002;0.81876;0.74561;0.24464 +;-;-;-;-;-;-;-;-;- + 449 NaN NaN 190480.1 NaN 13305 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16891 72.096 NaN 416060 35 0 44736 0.263 -1 VPMEDINL 8 67 473.73125633104536 945.4479597288907 2 473.73095703125 MULTI HCD FTMS 0 0 0 16885 175944.359375 0.2302167117568522 11 -0.311309814453125 6 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 23.1484247019978 0.4234759064137959 2 {I|L}N{I|L} 3 -1 33.188 0 0 3.5103 0 0 587.2259623599116 0 587.2259623599116 0 12.253092817258633 0 0 0 0.3494850021680094 0 0 0.3494850021680094 {I|L}N{I|L} 3.5103 + + 354 NaN NaN 167988 NaN 13306 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16892 72.099 NaN 547150 35 0 75932 0.261 + 11506 IYRCRASGIF 10 89 593.3133662523729 1184.6121795715458 2 593.3143310546875 MULTI HCD FTMS 0 0 0 16885 124824.2578125 0.6856659701650104 -1 0.029510498046875 7 Unmodified _IYRCRASGIF_ ENSG00000147912|ENST00000432825|FBXO10;ENST00000541804.1_1_9:37512546-37588833:-|nuORF;ENST00000543968.5_1_9:37521875-37532049:-|nuORF;nc|ENSG00000147912|Q9UK96-2|FBXO10 29.081581746732265 0.240155558137004 2 [Y{I|L}]R 3 7 30.942 0 0 2.612 0 0 0 749.3419196081971 749.3419196081971 10.140143618001218 0 0 0 0 0.5 2 0 0 + [Y{I|L}]R 2.612 + + 165 NaN NaN 178153.3 NaN 13307 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16893 72.102 NaN 163590 35 0 20660 0.261 + 4424 EYGFISQTL 9 48 529.2640896427313 1056.5136263522625 2 529.263916015625 MULTI HCD FTMS 0 0 0 16885 104662.125 0.5639650122208012 3 -0.09188079833984375 8 Unmodified _EYGFISQTL_ ENSG00000057704|ENST00000261226|TMCC3 34.93206674587334 0.08860942999206235 2 SQT{I|L} 4 5 43.175 0 0 4.0866 0 0 609.2797231885894 0 609.2797231885894 0 36.82380653375944 0 0 0 1.4247425010840047 0 0 0 + SQT{I|L} 4.0866 + + 31 NaN NaN 137236.5 NaN 13308 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16894 72.106 NaN 675470 35 0 164600 0.261 + 7908 FYVRGLFSFF 10 63 641.8329649203824 1281.6513769075648 2 641.8504638671875 MULTI HCD FTMS 0 0 0 16885 23085.908203125 0.5070317065087425 5 -0.1443634033203125 9 Unmodified _FYVRGLFSFF_ ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2 6.723162845929126 0.4397169348982109 2 EAP[MN]{M(Oxidation (M))|F} 6 9 19.385 0 0 1.5125 0 0 574.3473773967347 0 574.3473773967347 0 8.927900303521314 0 0 0 0 0 0 0 EAP[MN]{M(Oxidation (M))|F} 1.5125 - 69 NaN NaN 213445.5 NaN 13309 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16895 72.109 NaN 144310 35 0 9269.6 0.261 -1 KCYCRLKAM 9 59 586.7898999324784 1171.5652469317567 2 587.8106689453125 MULTI HCD FTMS 0 0 0 16885 14050.634765625 0.2127522622242443 7 -0.1933746337890625 10 Carbamidomethyl (C) _KC(Carbamidomethyl (C))YCRLKAM_ ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2 4.3292370932331545 0.3181982124262546 2 {I|L}{M(Oxidation (M))|F}NP 4 -1 31.938 0 0 2.7261 0 0 682.3332673485918 0 682.3332673485918 0 14.313637641589875 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}NP 2.7261 - 115 NaN NaN 128783.4 NaN 13310 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16896 72.112 NaN 202050 35 0 18464 0.264 + 12868 KYFLWVVKF 9 65 410.57419450096904 1228.700754103107 3 410.574462890625 MULTI HCD FTMS 0 0 0 16885 66501.6875 0.281015228909025 3 -0.09188079833984375 11 Unmodified _KYFLWVVKF_ ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2 27.223235318498237 0.1251536255799991 2 [Y{M(Oxidation (M))|F}]K{I|L}WVVK{M(Oxidation (M))|F} 9 2 [Y{M(Oxidation (M))|F}]K{I|L} + + 49.949 6.6555 1.2072 4.0651 4.0651 61.043 0 0 0 0 45.34440644703906 0 0 0 1.5 0 0 0 [Y{M(Oxidation (M))|F}]K{I|L}WVVK{M(Oxidation (M))|F} 4.0651 - 67 + NaN NaN 123273.2 NaN 13311 3583 16885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16898 72.117 NaN 5970000 35 0 2336100 0.327 + 8406 GYPLWKVTF 9 104 555.8025935526008 1109.5906341720015 2 555.8029174804688 MULTI HCD FTMS 0 0 0 16897 2862297 0.8535012208542208 1 -0.01952362060546875 1 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 92.65332237495696 0.004456439685314431 2 [YG]P{I|L}WKVT{M(Oxidation (M))|F} 9 0 + 106.44 0 0 9.5924 9.5924 97.731 0 0 0 4.559771852360797 4.559771852360797 4.559771852360797 32.629106573952456 0 3.2302046884880937 2 0.7302046884880937 0 + + [YG]P{I|L}WKVT{M(Oxidation (M))|F};[YG]P{I|L}W{[TV]|[{I|L}S]}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VSWKVT{M(Oxidation (M))|F};[{I|L}P]GYWKVT{M(Oxidation (M))|F};[YG]P{I|L}T{[RE]|[WV]}K{M(Oxidation (M))|F};[YG]P{I|L}{[MS]|[{M(Oxidation (M))|F}A]}APK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VSTGRVT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DTRKVT{M(Oxidation (M))|F};[YG]P{I|L}W[{M(Oxidation (M))|F}T]{[QV]|[N{I|L}]|[RA]|[KV]};[{I|L}P]W[YG]KVT{M(Oxidation (M))|F} 9.5924;6.6518;6.3802;6.2985;5.4551;5.2299;5.2296;5.0513;4.978;4.9673 +;-;-;-;-;-;-;-;-;- + 3425 + NaN NaN 704962.1 NaN 13312 3584 16897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16899 72.122 NaN 1038800 35 0 192310 0.261 -1 YPQKHMRLF 9 85 618.3213275062147 1234.6281020792294 2 618.321044921875 MULTI HCD FTMS 0 0 0 16897 447151.0625 0.06224079446708978 12 -0.3341064453125 2 Oxidation (M) _YPQKHM(Oxidation (M))RLF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 10.823927491677226 0.26684000660059787 2 YYPEYK 6 -1 62.701 0 0 5.0785 0 0 0 388.2247408502563 388.2247408502563 38.52690962719841 0 0 0 0 1.5356668758921828 2 0 0 YYPEYK 5.0785 - 377 + NaN NaN 256091.3 NaN 13313 3584 16897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16900 72.125 NaN 820460 35 0 50296 0.261 + 21543 PYLGKYKAGF 10 110 572.3137601846748 1142.6129674361496 2 572.3259887695312 MULTI HCD FTMS 0 0 0 16897 29559.30859375 0.6028418361957338 8 -0.21262359619140625 3 Unmodified _PYLGKYKAGF_ ENSG00000138356|ENST00000374700|AOX1 12.531546534597751 0.39389615866941496 2 PYYS 4 7 44.434 0 0 3.8888 0 0 0 629.4042452447874 629.4042452447874 4.629347268077844 0 0 0 0 0 2 0.2742275032520141 0 PYYS 3.8888 - 1385 + NaN NaN 209082 NaN 13314 3584 16897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16901 72.128 NaN 286110 35 0 26620 0.261 + 13284 KYMDINFDF 9 56 596.7711176425278 1191.5276823518554 2 596.771240234375 MULTI HCD FTMS 0 0 0 16897 147693.71875 0.04492991532541084 12 -0.3341064453125 4 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 35.61225514009592 0.08548698421724198 2 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 57.128 0 0 4.7945 0 0 422.1984120099625 0 422.1984120099625 0 45.70107520596089 0 0 0 1.9247425010840047 0 0 0 + D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.7945 + + 357 NaN NaN 135475.1 NaN 13315 3584 16897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16902 72.132 NaN 244340 35 0 11299 0.261 + 6045 FPDTPLEEW 9 72 567.260349979118 1132.506147025036 2 567.2791748046875 MULTI HCD FTMS 0 0 0 16897 64217.28125 0.7192839268480267 -7 0.20639801025390625 5 Unmodified _FPDTPLEEW_ ENSG00000162779|ENST00000367618|AXDND1 12.531546534597751 0.2520865569484384 2 {M(Oxidation (M))|F}PEE{I|L}[EP]SW 9 5 + 43.259 0 0 3.8198 3.8198 86.537 0 0 0 21.832750158094996 7.619478172486467 7.619478172486467 10.969100130080555 0 0.2614393726401688 0 0.7614393726401688 0 {M(Oxidation (M))|F}PEE{I|L}[EP]SW;{M(Oxidation (M))|F}PEE[DP][{I|L}T]W;{[YD]|[{M(Oxidation (M))|F}M]}S{I|L}H{[WS]|[C(Carbamidomethyl (C)){I|L}]}PE;{[YD]|[{M(Oxidation (M))|F}M]}[KA][YT]{M(Oxidation (M))|F}PE;[YT]{[NV]|[RG]}[YT]{M(Oxidation (M))|F}PE;M{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{I|L}SME;M{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{I|L}D[MT];{M(Oxidation (M))|F}P{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{I|L}D[MT];M{I|L}{M(Oxidation (M))|F}[YT]{[QV]|[N{I|L}]|[RA]|[KV]}[MT];{[CT]|[{M(Oxidation (M))|F}G]}S[VS][YT]{M(Oxidation (M))|F}PE 3.8198;2.8512;2.582;2.239;1.998;1.673;1.6691;1.3476;1.3261;1.3156 -;-;-;-;-;-;-;-;-;- 379 + NaN NaN 133953.7 NaN 13316 3584 16897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16904 72.137 NaN 439900 35 0 74511 0.327 + 21013 PLPEGWEI 8 60 470.7424453859744 939.4703378387488 2 470.7422790527344 MULTI HCD FTMS 0 0 0 16903 213379.59375 0.6575683495707552 8 -0.22597503662109375 1 Unmodified _PLPEGWEI_ ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-3|WWP1;nc|ENSG00000123124|Q9H0M0-6|WWP1;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 12.531546534597751 0.5015908124873912 2 WE{I|L} 3 5 30.445 0 0 3.2407 0 0 493.25321697181835 0 493.25321697181835 0 23.455612550363796 0 0 0 0.4247425010840047 0 0 0 + WE{I|L} 3.2407 + + 37 NaN NaN 169599.1 NaN 13317 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16905 72.141 NaN 713660 35 0 95123 0.261 -1 VMMTLVMVVF 10 70 609.3035935780581 1216.592634222916 2 609.3025512695312 MULTI HCD FTMS 0 0 0 16903 245886.8125 0.8545576481027245 -1 0.01952362060546875 2 3 Oxidation (M) _VM(Oxidation (M))M(Oxidation (M))TLVM(Oxidation (M))VVF_ tr|U7SVY0|U7SVY0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01379PE=4SV=1 13.90604991867851 0.3810395177745597 2 [Y{I|L}]{M(Oxidation (M))|F}{[QG]|[NA]}{[CA]|SS}AVV{M(Oxidation (M))|F} 11 -1 + 54.429 0 0 4.4739 4.4739 85.105 0 0 0 9.699241606985431 32.51789816242496 9.699241606985431 8.565473235138121 0 1.5 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F}{[QG]|[NA]}{[CA]|SS}AVV{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[QG]|[NA]}[MN]VV{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}D[WQ]AK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KC][{M(Oxidation (M))|F}E]AVV{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[QG]|[NA]}[WE]K{M(Oxidation (M))|F} 4.4739;3.7698;3.56;3.0694;2.3922;2.2662 -;-;-;-;-;- 363 NaN NaN 212728.6 NaN 13318 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16906 72.145 NaN 526240 35 0 74417 0.261 + 12687 KWLLYPTEI 9 76 581.8290189200499 1161.6434849068996 2 581.8291015625 MULTI HCD FTMS 0 0 0 16903 163679.46875 0.12720620579136732 8 -0.22597503662109375 3 Unmodified _KWLLYPTEI_ ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3 60.07390631473393 0.0174780869009295 2 {I|L}YPTE{I|L} 6 3 50.583 0 0 4.3544 0 0 427.2574940412125 0 427.2574940412125 0 23.388859428910397 0 0 0 1.6694451763165201 0 0.4247425010840047 0 + {I|L}YPTE{I|L} 4.3544 + + 413 NaN NaN 189969 NaN 13319 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16907 72.148 NaN 326090 35 0 24746 0.261 -1 TLESWRSLC 9 74 576.2803764677263 NaN 0 576.2676391601562 PEAK HCD FTMS 0 0 0 16903 10011.240234375 0.6735166912272426 -1 0.01952362060546875 4 Carbamidomethyl (C) _TLESWRSLC(Carbamidomethyl (C))_ ENSG00000177283|ENST00000374694|FZD8 13.90604991867851 0.22786006501039813 2 TE{M(Oxidation (M))|F} 3 -1 19.693 0 0 1.7116 0 0 131.12141488966364 639.2441806395015 770.3655955291651 0 0 0 0 0 0 0 0.3494850021680094 0 TE{M(Oxidation (M))|F} 1.7116 - 236 + NaN NaN 145838.2 NaN 13320 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16908 72.151 NaN 518070 35 0 73193 0.261 + 20218 NYLKGHPMTAQ 11 84 630.3135528673843 1258.6125528015684 2 630.3135986328125 MULTI HCD FTMS 0 0 0 16903 69437.625 0.44742733270662743 -3 0.08860015869140625 5 Unmodified _NYLKGHPMTAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 23.789781309258295 0.24980126723476595 2 [YN]{I|L} 3 -1 41.628 0 0 3.3075 0 0 0 865.3995392796921 865.3995392796921 15.58754963143841 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0.6694451763165201 [YN]{I|L} 3.3075 + + 389 NaN NaN 176365.6 NaN 13321 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16909 72.155 NaN 273530 35 0 25443 0.261 -1 MQPRMFFLF 9 68 624.7978096093594 1247.5810662855188 2 624.7981567382812 MULTI HCD FTMS 0 0 0 16903 40029.36328125 0.6084126272231886 1 -0.0327911376953125 6 2 Oxidation (M) _M(Oxidation (M))QPRM(Oxidation (M))FFLF_ ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF;nc|ENSG00000180263|Q6ZV73-2|FGD6 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 28.812 0 0 2.3095 0 0 822.3555775373062 0 822.3555775373062 0 24.20818753952375 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.3095 + + 34 NaN NaN 135163.7 NaN 13322 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16910 72.158 NaN 398190 35 0 23104 0.261 + 10371 IMELAGQNEE 10 82 567.260349979118 1132.506147025036 2 567.260009765625 MULTI HCD FTMS 0 0 0 16903 36767.43359375 0.41182409938036035 -6 0.17706298828125 7 Unmodified _IMELAGQNEE_ REV__ENSG00000128487|ENST00000395527|SPECC1;REV__nc|ENSG00000128487|Q5M775-2|SPECC1;REV__nc|ENSG00000128487|Q5M775-3|SPECC1;REV__nc|ENSG00000128487|Q5M775-4|SPECC1;REV__nc|ENSG00000128487|Q5M775-5|SPECC1;REV__SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant 27.628801355627647 0.2527626205058048 2 {M(Oxidation (M))|F}PEE{I|L}[EP]SW 9 -1 + 46.867 0 0 4.1384 4.1384 61.117 0 0 0 0.9167282663171932 0.9167282663171932 0.9167282663171932 0 0 0.6694451763165201 0 0.6861818737241735 0 {M(Oxidation (M))|F}PEE{I|L}[EP]SW;{M(Oxidation (M))|F}PEE{I|L}T[DP]W;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[TA]T[KG]GEPE 4.1384;4.1384;4.0574 -;-;- 494 + NaN NaN 151049.9 NaN 13323 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16911 72.161 NaN 166490 35 0 37585 0.261 -1 FPANVMDVI 9 41 511.25480385671625 1020.4950547802325 2 511.2543029785156 MULTI HCD FTMS 0 0 0 16903 38423.31640625 0.05403401290439393 -17 0.46852874755859375 8 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 5.731851221503515 0.3075653528928475 2 DV{I|L} 3 -1 26.198 0 0 2.5672 0 0 675.3062611310562 0 675.3062611310562 0 25.088643834802156 0 0 0 0 0 0 0 DV{I|L} 2.5672 + + 10 NaN NaN 130474.6 NaN 13324 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16912 72.165 NaN 190400 35 0 11154 0.261 + 7319 FTTRLSLMF 9 69 558.2983987145508 NaN 0 558.2979736328125 PEAK HCD FTMS 0 0 0 16903 6816.95751953125 0.2500620805932913 1 -0.0327911376953125 9 Unmodified _FTTRLSLMF_ ENST00000483804.5_1_1:161180439-161182178:+|nuORF 10.823927491677226 0.2427956001690155 2 {I|L}M 2 7 16.013 0 0 1.4367 0 0 705.3812079742203 162.05596338443596 867.4371713586562 0 0 0 0 0 0.805462187404089 0 0 0 + {I|L}M 1.4367 + + 85 + NaN NaN 139957.6 NaN 13325 3585 16903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16914 72.169 NaN 3406700 35 0 521620 0.327 + 13943 KYQYWAVVF 9 92 602.3136373386429 1202.6127217440858 2 602.313720703125 MULTI HCD FTMS 0 0 0 16913 2607503.5 1 0 0 1 Unmodified _KYQYWAVVF_ ENSG00000135845|ENST00000344529|PIGC;PIGC|p.E54K|1|0.23|ENSG00000135845|chr1:172442463-172442463|C/T|missense_variant 85.35673624503755 0.00464763827098139 2 [YQ]KYWAVV{M(Oxidation (M))|F} 9 2 + 83.452 0 0 6.9392 6.9392 86.069 0 0 0 1.249387366082999 9.928702923165389 1.249387366082999 1.249387366082999 0 2.3494850021680094 0 0 1.0114393726401687 [YQ]KYWAVV{M(Oxidation (M))|F};[YK]QYWAVV{M(Oxidation (M))|F};[YK][AG]YWAVV{M(Oxidation (M))|F};[YQ]YKWAVV{M(Oxidation (M))|F};[YQ]YWKAVV{M(Oxidation (M))|F};[YQ]YWAKVV{M(Oxidation (M))|F};[YQ]YWAVKV{M(Oxidation (M))|F};[YQ]YWAVVK{M(Oxidation (M))|F};VVAWY[YQ]K{M(Oxidation (M))|F};VVAWY[YG]AK{M(Oxidation (M))|F} 6.9392;6.8354;6.0697;5.8314;4.897;4.4813;3.5649;2.8684;2.6414;2.4439 -;+;-;-;-;-;-;-;-;- + 2590 NaN NaN 524420.8 NaN 13326 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16915 72.174 NaN 986510 35 0 127090 0.264 -1 PDGSSKGC 8 58 404.1696931571729 806.3248333811458 2 404.1700439453125 MULTI HCD FTMS 0 0 0 16913 989332.4375 0.11814872846495643 9 -0.2556610107421875 2 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 {I|L}[EP] 3 -1 4.437 0 0 0.55027 0 0 449.1535106109465 0 449.1535106109465 0 3.7236374744834673 0 0 0 0 0 0 0 {I|L}[EP] 0.55027 - 2 NaN NaN 231756.7 NaN 13327 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16916 72.177 NaN 721280 35 0 104090 0.261 + 3060 EAFVWEPAM 9 72 548.2445871423743 1094.4746213515484 2 548.2444458007812 MULTI HCD FTMS 0 0 0 16913 211627.6875 0.5712374303212217 -5 0.150909423828125 3 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 88.90359156742426 0.00455469703666567 2 VWEPA{M(Oxidation (M))|F} 6 3 63.281 0 0 5.7819 0 0 347.14834431928165 0 347.14834431928165 0 52.47933455448525 0 0 0 2.4916440611282624 0 0.3494850021680094 0 + VWEPA{M(Oxidation (M))|F} 5.7819 + + 635 + NaN NaN 223864.3 NaN 13328 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16917 72.181 NaN 361170 35 0 27491 0.261 + 13191 KYLTEGLLQF 10 71 606.3371186913156 1210.659684449431 2 606.3375244140625 MULTI HCD FTMS 0 0 0 16913 106444.8359375 0.01747294286333132 21 -0.6028823852539062 4 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 48.07275321834293 0.08479850339886455 2 TEAV{I|L}Q{M(Oxidation (M))|F} 7 5 60.666 0 0 5.011 0 0 404.24189955879064 0 404.24189955879064 0 49.72434491421879 0 0 0 1.6237125054200234 0 0.3494850021680094 0 TEAV{I|L}Q{M(Oxidation (M))|F} 5.011 - 360 NaN NaN 158624.9 NaN 13329 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16918 72.184 NaN 583320 35 0 78649 0.263 + 14512 LFDAVIRL 8 75 473.7897526212952 945.5649523093904 2 473.7898254394531 MULTI HCD FTMS 0 0 0 16913 262124.28125 0.7006399747274425 -2 0.05231475830078125 5 Unmodified _LFDAVIRL_ ENSG00000111602|ENST00000553532|TIMELESS;nc|ENSG00000111602|Q9UNS1-2|TIMELESS 60.07390631473393 0.06540289509817182 2 {I|L}{M(Oxidation (M))|F}DAV{I|L}R{I|L} 8 0 + 81.355 0 0 8.6038 8.6038 96.34 0 0 0 67.33078780285204 8.979400086720375 8.979400086720375 26.535984316004217 0 2.4291746928241125 1.2218487496163564 0.75 0 + + {I|L}{M(Oxidation (M))|F}DAV{I|L}R{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAV{I|L}R{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAVR{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}{I|L}[VG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}[VG]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QV]|[N{I|L}]|[RA]|[KV]}V{M(Oxidation (M))|F}{I|L}{I|L} 8.6038;5.7974;5.2161;2.1269;1.5456;0.08589 +;+;-;-;-;- + 357 + NaN NaN 176004.4 NaN 13330 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16919 72.187 NaN 169380 35 0 14315 0.261 -1 STFHDQIAM 9 53 533.2377256339946 1064.4608983347891 2 533.25 MULTI HCD FTMS 0 0 0 16913 20382.478515625 0.3826723936946466 -8 0.2293548583984375 6 Oxidation (M) _STFHDQIAM(Oxidation (M))_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 11.640296217721598 0.25978676193971967 2 A[HK]DV{I|L}A{M(Oxidation (M))|F} 8 -1 39.641 0 0 3.7241 0 0 165.02284255607543 0 165.02284255607543 0 27.95880017344075 0 0 0 0.4247425010840047 0 0.4247425010840047 0 A[HK]DV{I|L}A{M(Oxidation (M))|F} 3.7241 - 103 + NaN NaN 117947.4 NaN 13331 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16920 72.191 NaN 131780 35 0 10728 0.261 + 18125 MPDFDLHL 8 49 494.2338834211016 986.4532139090032 2 494.23406982421875 MULTI HCD FTMS 0 0 0 16913 57891.97265625 0.03647133876247842 21 -0.6028823852539062 7 Unmodified _MPDFDLHL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 2 {I|L}H{I|L} 3 5 23.416 0 0 2.3738 0 0 605.2144642560562 0 605.2144642560562 0 2.4472749489669354 0 0 0 0.5 0 0 0 + {I|L}H{I|L} 2.3738 + + 14 NaN NaN 121176.4 NaN 13332 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16921 72.194 NaN 145870 35 0 17578 0.261 + 29184 TYITNQAAVYF 11 51 645.8218388224037 NaN 0 645.8226318359375 PEAK HCD FTMS 0 0 0 16913 47636.09765625 0.5481470410686378 2 -0.05248260498046875 8 Unmodified _TYITNQAAVYF_ ENSG00000168439|ENST00000305218|STIP1;ENST00000394563.4_1_X:85340081-85340624:-|nuORF;nc|ENSG00000168439|P31948-2|STIP1;nc|ENSG00000168439|P31948-3|STIP1 20.41453444215458 0.2532867789550098 2 YV 2 9 18.711 0 0 1.4509 0 0 165.08032372060308 859.3931978815061 1024.4735216021093 0 0 0 0 0 0.9247425010840047 0 0 0 YV 1.4509 - 9 + NaN NaN 125564.3 NaN 13333 3586 16913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16923 72.199 NaN 1281200 35 0 140510 0.327 + 25875 SMTRYFYLF 9 103 622.2946879862326 1242.574823039265 2 622.294921875 MULTI HCD FTMS 0 0 0 16922 298078.8125 0.12619050214562386 -7 0.20660400390625 1 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 41.95555342248728 0.056367691549927025 2 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 4 44.979 0 0 3.6198 0 0 491.21617324043126 0 491.21617324043126 0 22.681831624985517 0 0 0 1.4802046884880937 0 0 0 + Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 3.6198 + + 1787 NaN NaN 280145.7 NaN 13334 3587 16922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16924 72.203 NaN 161830 35 0 9184.6 0.261 + 12956 KYIDYIFNV 9 68 587.8103983506529 1173.6062437681057 2 587.8110961914062 MULTI HCD FTMS 0 0 0 16922 38606.078125 0.019553277013398217 24 -0.68792724609375 2 Unmodified _KYIDYIFNV_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 23.789781309258295 0.1548179064208189 2 K{I|L}{M(Oxidation (M))|F}NV 5 4 47.875 0 0 4.0793 0 0 554.2470570294937 0 554.2470570294937 0 8.312477905991003 0 0 0 1.2302046884880937 0 0 0 K{I|L}{M(Oxidation (M))|F}NV 4.0793 - 368 NaN NaN 117338.3 NaN 13335 3587 16922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16925 72.207 NaN 122570 35 0 4905.2 0.264 + 30156 VGVAQRRG 8 69 421.7514557439326 841.4883585546652 2 421.7514343261719 MULTI HCD FTMS 0 0 0 16922 35274.359375 0.4214932213712296 -6 0.180450439453125 3 Unmodified _VGVAQRRG_ REV__ENSG00000282936|ENST00000634965|unknown 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 2.019 0 0 676.4094686394293 0 676.4094686394293 0 9.54242509439325 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.019 - 13 + NaN NaN 110722.6 NaN 13336 3587 16922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16926 72.21 NaN 140890 35 0 9173.2 0.261 + 4425 EYGFISQTL 9 56 529.2640896427313 1056.5136263522625 2 529.2625732421875 MULTI HCD FTMS 0 0 0 16922 32011.787109375 0.17249342021622777 7 -0.18988800048828125 4 Unmodified _EYGFISQTL_ ENSG00000057704|ENST00000261226|TMCC3 17.11289562659939 0.2125047172822487 2 T{I|L} 2 7 20.445 0 0 1.9352 0 0 824.3688221662125 0 824.3688221662125 0 6.465912507003608 0 0 0 0.4247425010840047 0 0 0 + T{I|L} 1.9352 + + 21 NaN NaN 109905.2 NaN 13337 3587 16922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16927 72.214 NaN 282830 35 0 18829 0.261 -1 FPSNLVTEML 10 78 583.7900835984007 1165.5656142636012 2 584.291748046875 MULTI HCD FTMS 0 0 0 16922 20967.033203125 0.3309141679049735 -6 0.180450439453125 5 Oxidation (M) _FPSNLVTEM(Oxidation (M))L_ ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10 17.44264345198275 0.3479594151168503 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HHV[DP]{I|L}{[QS]|[NT]} 10 -1 + 26.157 0 0 2.2442 2.2442 80.418 0 0 0 1.4988402644011174 7.768024924119668 1.4988402644011174 1.3240031304648028 0 0.5 2 0.3252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HHV[DP]{I|L}{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP][K{I|L}]E{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP][KT]W{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}SQQ{I|L}{[QS]|[NT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}[RN]W{[QS]|[NT]} 2.2442;2.1306;0.90779;0.82139;0.39125 -;-;-;-;- 355 NaN NaN 154959.9 NaN 13338 3587 16922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16928 72.217 NaN 173980 35 0 14404 0.261 + 5483 FIVSKVMFF 9 65 559.3110692565587 1116.6075855799172 2 559.7368774414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FIVSKVMFF_ REV__ENSG00000198792|ENST00000361906|TMEM184B;REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}VWE[CS]{M(Oxidation (M))|F} 7 -1 28.192 0 0 2.5248 0 0 200.22905882386095 0 200.22905882386095 0 17.223119646384788 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}VWE[CS]{M(Oxidation (M))|F} 2.5248 - 81 + NaN NaN 109999.3 NaN 13339 3587 16922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16930 72.222 NaN 3122000 35 0 522950 0.327 + 6157 FPEHIFPAL 9 98 535.7874179887401 1069.5602830442801 2 535.787353515625 MULTI HCD FTMS 0 0 0 16929 1614500.375 0.10085541709343064 16 -0.45529937744140625 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 123.09622228370866 0.0010236603636890153 2 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 8 4 54.323 0 0 5.079 0 0 165.0790730207047 0 165.0790730207047 0 23.330968998669917 0 0 0 1.9456290139465233 0 0.9027084789088669 0 V[MD]{I|L}{M(Oxidation (M))|F}PA{I|L} 5.079 - 3413 NaN NaN 561064.1 NaN 13340 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16931 72.226 NaN 586100 35 0 175740 0.261 + 7904 FYVPAEPKLAF 11 51 641.3478634252766 1280.6811739173531 2 641.3474731445312 MULTI HCD FTMS 0 0 0 16929 269364.78125 0.868228967312256 2 -0.04901123046875 2 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 28.233623360808718 0.2127292296419295 2 EAPV[YE] 6 9 38.645 0 0 3.0175 0 0 574.3474679301103 0 574.3474679301103 0 19.181212380090216 0 0 0 1.5 0 0 0 EAPV[YE] 3.0175 - 30 NaN NaN 184883.2 NaN 13341 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16932 72.23 NaN 1272300 35 0 91801 0.261 + 19829 NYAWVYYHL 9 102 614.7931119449629 1227.5716709567257 2 614.79296875 MULTI HCD FTMS 0 0 0 16929 277879.6875 0.004374335065060672 118 -3.22003173828125 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 118.89474601620944 0.0014903111061077812 2 [YN]AWVYYH{I|L} 9 0 + 100.7 0 0 8.2032 8.2032 96.334 0 0 0 30.79554660818438 16.478174818886373 16.478174818886373 35.03714405160308 0 2.5356668758921828 1.6989700043360187 0 1.9302658941747248 + + [YN]AWVYYH{I|L};[YN]AWVDW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[QV]|[N{I|L}]|[RA]|[KV]}[HT]EVCYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[HT]EVWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]M[KP]D[NP]H{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[KA]{[YC]|[HE]}EVCYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[HT]EVW{[C(Carbamidomethyl (C))G]|[NC]}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]VD[NP]H{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.2032;5.349;4.2965;3.6309;3.6071;3.4201;3.2367;3.2236;3.0101;2.7913 +;-;-;-;-;-;-;-;-;- + 1710 NaN NaN 278015.3 NaN 13342 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16933 72.233 NaN 1010000 35 0 129410 0.261 + 3061 EAFVWEPAM 9 89 548.2445871423743 1094.4746213515484 2 548.2444458007812 MULTI HCD FTMS 0 0 0 16929 311468.25 0.8407327266979083 -3 0.08527374267578125 4 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 92.8221339359638 0.0044520161739443126 2 CNVWEPA{M(Oxidation (M))|F} 8 3 58.331 0 0 5.3296 0 0 130.07312852380284 0 130.07312852380284 0 41.87707207549607 0 0 0 2.1549471895720984 0 0.3494850021680094 0 CNVWEPA{M(Oxidation (M))|F} 5.3296 - 1341 + NaN NaN 256640.4 NaN 13343 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16934 72.237 NaN 194210 35 0 18247 0.261 + 14746 LHSYTFLPF 9 63 562.7932995845082 1123.5720462358163 2 562.7927856445312 MULTI HCD FTMS 0 0 0 16929 70836.1015625 0.21327181779520685 7 -0.20317840576171875 5 Unmodified _LHSYTFLPF_ ENST00000484496.5_1_7:128032984-128040541:-|nuORF 11.640296217721598 0.25978676193971967 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT{M(Oxidation (M))|F} 9 7 + 37.826 0 0 3.3666 3.3666 81.792 0 0 0 3.5861277668990326 10.563565498376455 3.5861277668990326 3.384315473529192 0 2.548455006504028 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}WKVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[NP][{I|L}T]VT{M(Oxidation (M))|F};[YV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]VT{M(Oxidation (M))|F} 3.3666;3.0654;1.8936 -;-;- 152 NaN NaN 112475.9 NaN 13344 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16935 72.24 NaN 141330 35 0 18761 0.261 + 2621 DVAFTDPTL 9 54 489.7427489447271 977.4709449562542 2 489.7425537109375 MULTI HCD FTMS 0 0 0 16929 35999.6328125 0.2921241190225204 4 -0.10782623291015625 6 Unmodified _DVAFTDPTL_ ENSG00000151689|ENST00000392329|INPP1 47.748688679222035 0.03472022231463587 2 [DV][YR]D 5 6 38.952 0 0 3.985 0 0 0 326.17160974674067 326.17160974674067 19.91135616519784 0 0 0 0 1.4247425010840047 2 0.4247425010840047 0 [DV][YR]D 3.985 - 115 + NaN NaN 105992 NaN 13345 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16936 72.243 NaN 156840 35 0 16010 0.261 + 14661 LGPEEWEL 8 43 486.737468297441 971.460383661682 2 486.7367858886719 MULTI HCD FTMS 0 0 0 16929 46690.40234375 0.4557054187905799 8 -0.22930908203125 7 Unmodified _LGPEEWEL_ REV__ENST00000552176.2_17:6916465-6916567:+|nuORF 8.593279151180031 0.5292430274356741 2 E{I|L} 2 -1 25.217 0 0 2.5957 0 0 711.3219471662125 0 711.3219471662125 0 19.731975075880328 0 0 0 0 0 0.4247425010840047 0 E{I|L} 2.5957 + + 14 NaN NaN 105249.1 NaN 13346 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16937 72.246 NaN 142510 35 0 15711 0.261 + 8336 GYGKFLIAF 9 57 508.28426592500824 NaN 0 508.2844543457031 PEAK HCD FTMS 0 0 0 16929 45848.91796875 0.8030970077129266 -1 0.02294158935546875 8 Unmodified _GYGKFLIAF_ ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF;nc|ENSG00000103510|Q9H7Z6-2|KAT8 28.486842064014134 0.13043271994793734 2 A{I|L} 2 8 19.464 0 0 1.9185 0 0 165.07984262696738 662.331203413466 827.4110460404333 0 0 0 0 0 1 0 0 0 A{I|L} 1.9185 - 14 + NaN NaN 125932.1 NaN 13347 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16938 72.25 NaN 99139 35 0 7301.1 0.261 -1 IPDEIIDMV 9 43 530.7656332952063 1059.5167136572124 2 530.7649536132812 MULTI HCD FTMS 0 0 0 16929 33417.58203125 0.1573081601568959 18 -0.5142898559570312 9 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 19.256988751693697 0.19398022840297344 2 {I|L}D{M(Oxidation (M))|F}V 4 -1 40.191 0 0 3.7933 0 0 567.2903841546797 0 567.2903841546797 0 38.20107520596089 0 0 0 0.8252574989159953 0 0 0 {I|L}D{M(Oxidation (M))|F}V 3.7933 + + 20 NaN NaN 119550.6 NaN 13348 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16939 72.253 NaN 91387 35 0 9066 0.262 + 8056 GHLGPVTAV 9 40 425.74194411651183 NaN 0 425.741943359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _GHLGPVTAV_ ENSG00000184465|ENST00000448612|WDR27;ENST00000496752.1_1_6:170065563-170070787:-|nuORF;nc|ENSG00000184465|A2RRH5|WDR27 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118457.1 NaN 13349 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16940 72.256 NaN 111470 35 0 7311.1 0.261 + 1076 AYIAIKDVKF 10 45 584.3421057162402 1166.6696584992803 2 584.8441772460938 MULTI HCD FTMS 0 0 0 16929 19461.181640625 0.7215726291324704 2 -0.04901123046875 11 Unmodified _AYIAIKDVKF_ tr|U7ST70|U7ST70_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01242PE=4SV=1 11.640296217721598 0.4022326134240651 2 T{M(Oxidation (M))|F} 2 9 25.969 0 0 2.2259 0 0 900.5436036670523 0 900.5436036670523 0 15.511525224473813 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.2259 - 17 + NaN NaN 111695.2 NaN 13350 3588 16929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16942 72.261 NaN 95704 35 0 8419 0.327 + 12869 KYFLWVVKF 9 41 410.57419450096904 1228.700754103107 3 410.5736083984375 MULTI HCD FTMS 0 0 0 16941 9611.265625 0.04061418756801951 9 -0.238922119140625 1 Unmodified _KYFLWVVKF_ ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2 10.799506525563784 0.2670509983294061 2 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.1886 0 0 1063.6224592806445 0 1063.6224592806445 0 2.614393726401687 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.1886 + + 6 + NaN NaN 122961.2 NaN 13351 3589 16941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16943 72.266 NaN 76163 35 0 6591.1 0.261 -1 MMHYFCALNT 10 42 644.2723999023438 NaN 0 644.2723999023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _MMHYFC(Carbamidomethyl (C))ALNT_ ENSG00000157500|ENST00000288266|APPL1;ENST00000482800.5_1_3:57261911-57301862:+|nuORF 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120613.4 NaN 13352 3589 16941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16945 72.271 NaN 1790200 35 0 440870 0.327 -1 TFKMILDLL 9 108 555.3174855716375 1108.6204182100748 2 555.8028564453125 MULTI HCD FTMS 0 0 0 16944 24433.787109375 0.3561686092839069 -1 0.00959014892578125 1 Oxidation (M) _TFKM(Oxidation (M))ILDLL_ ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4 32.78568957990786 0.09846250359632436 2 [YG]P{I|L}{[QG]|[NA]}TQT 9 -1 41.045 0 0 3.7023 0 0 0 160.16122566540608 160.16122566540608 8.444510684422028 0 0 0 0 0 2 0.8441876774005249 0.2302046884880938 [YG]P{I|L}{[QG]|[NA]}TQT 3.7023 - 3307 NaN NaN 351037.5 NaN 13353 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16946 72.275 NaN 464460 35 0 31277 0.261 -1 FISMFRTLL 9 89 572.3137601846748 1142.6129674361496 2 572.3262939453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _FISM(Oxidation (M))FRTLL_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|72 10.823927491677226 0.26684000660059787 2 PYYS 4 -1 42.027 0 0 3.6781 0 0 0 629.4014986627561 629.4014986627561 0.6381812627582661 0 0 0 0 0 1.6989700043360187 0 0 PYYS 3.6781 - 192 + NaN NaN 166260.7 NaN 13354 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16947 72.279 NaN 307400 35 0 40320 0.261 + 25892 SNFTWFAVFV 10 57 609.3035935780581 1216.592634222916 2 609.3031005859375 MULTI HCD FTMS 0 0 0 16944 88516.6796875 0.3076318117370048 4 -0.1179351806640625 3 Unmodified _SNFTWFAVFV_ REV__ENST00000498152.1_1_3:113344816-113344903:+|nuORF 12.240655878213236 0.39661705172222156 2 AVV{M(Oxidation (M))|F} 4 -1 42.423 0 0 3.487 0 0 782.337425165092 0 782.337425165092 0 11.610600080386035 0 0 0 1.5 0 0 0 AVV{M(Oxidation (M))|F} 3.487 - 170 NaN NaN 132831.3 NaN 13355 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16948 72.282 NaN 267780 35 0 50224 0.263 + 21014 PLPEGWEI 8 48 470.7424453859744 939.4703378387488 2 470.7421875 MULTI HCD FTMS 0 0 0 16944 108740.6875 0.33510437035670965 13 -0.38674163818359375 4 Unmodified _PLPEGWEI_ ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-3|WWP1;nc|ENSG00000123124|Q9H0M0-6|WWP1;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 16.942295170755138 0.46913822049235215 2 WE{I|L} 3 5 34.693 0 0 3.6928 0 0 493.2534219825842 0 493.2534219825842 0 27.703037561203843 0 0 0 0.8494850021680094 0 0 0 + WE{I|L} 3.6928 + + 32 NaN NaN 130232.5 NaN 13356 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16949 72.285 NaN 282060 35 0 46036 0.261 + 20219 NYLKGHPMTAQ 11 70 630.3135528673843 1258.6125528015684 2 630.3135375976562 MULTI HCD FTMS 0 0 0 16944 91453.7265625 0.5892899842403974 2 -0.05881500244140625 5 Unmodified _NYLKGHPMTAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 15.248480904072842 0.3242218977034194 2 [YN]{I|L} 3 -1 41.695 0 0 3.3128 0 0 0 865.3997970575978 865.3997970575978 30.72559982972642 0 0 0 0 1 1.6989700043360187 0 0.4247425010840047 [YN]{I|L} 3.3128 + + 70 NaN NaN 128982.9 NaN 13357 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16950 72.289 NaN 565890 35 0 126420 0.261 + 29436 TYTDRVFFL 9 94 581.3006497563529 1160.5867465795056 2 581.2896728515625 MULTI HCD FTMS 0 0 0 16944 22538.724609375 0.016542301575644302 25 -0.7239837646484375 6 Unmodified _TYTDRVFFL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 22.736283301280096 0.1639198954644489 2 DN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5 5 25.891 0 0 2.2308 0 0 506.27073867011876 0 506.27073867011876 0 3.566147098514705 0 0 0 0.7302046884880937 0 0.3807196863200844 0 DN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 2.2308 - 606 NaN NaN 166948.3 NaN 13358 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16951 72.292 NaN 223900 35 0 18141 0.261 -1 MPSVPDFETL 10 55 576.2683117017085 1150.522070470217 2 576.2681884765625 MULTI HCD FTMS 0 0 0 16944 88603.34375 0.5241974107821555 -15 0.41913604736328125 7 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 27.628801355627647 0.2527626205058048 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L} 10 -1 + 43.913 0 0 3.8168 3.8168 84.232 0 0 0 6.974987195809419 27.715299873086607 6.974987195809419 8.450528104279016 0 1 0 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}ET{I|L} 3.8168;3.0823 +;- + 177 NaN NaN 119854.9 NaN 13359 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16952 72.295 NaN 231110 35 0 16063 0.261 + 1110 AYIQEFQEF 9 56 587.774583911158 1173.5346148891158 2 587.7737426757812 MULTI HCD FTMS 0 0 0 16944 74224.9375 0.4654287294511975 -3 0.07195281982421875 8 Unmodified _AYIQEFQEF_ ENSG00000183801|ENST00000329293|OLFML1;ENST00000528308.1_1_11:7507082-7509735:+|nuORF 55.23464941255904 0.024247875903973527 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE{M(Oxidation (M))|F}QE{M(Oxidation (M))|F} 9 0 + 73.338 0 0 6.2493 6.2493 88.957 0 0 0 4.762036441594191 57.140012553530966 4.762036441594191 9.208187539523749 0 2.3494850021680094 0 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE{M(Oxidation (M))|F}QE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]E{M(Oxidation (M))|F}QE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}QE{M(Oxidation (M))|F}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]E{M(Oxidation (M))|F}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]QS{I|L}{M(Oxidation (M))|F}QE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]E{M(Oxidation (M))|F}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KA]E{M(Oxidation (M))|F}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][AG]S{I|L}{M(Oxidation (M))|F}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]QS{I|L}{M(Oxidation (M))|F}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]E[KA]{M(Oxidation (M))|F}QE{M(Oxidation (M))|F} 6.2493;5.4647;5.4647;4.9527;4.8391;4.6837;4.168;4.0544;4.0544;4.0136 +;-;-;-;-;-;-;-;-;- + 351 NaN NaN 118842.3 NaN 13360 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16953 72.299 NaN 176390 35 0 22478 0.261 -1 STFHDQIAM 9 45 533.2377256339946 1064.4608983347891 2 533.238037109375 MULTI HCD FTMS 0 0 0 16944 23078.423828125 0.4332876240854636 -4 0.10149383544921875 9 Oxidation (M) _STFHDQIAM(Oxidation (M))_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 11.640296217721598 0.25978676193971967 2 {I|L}A{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.9309 0 0 715.2975381396071 0 715.2975381396071 0 21.73393743112328 0 0 0 0.5 0 0 0 {I|L}A{M(Oxidation (M))|F} 2.9309 + + 32 + NaN NaN 109845 NaN 13361 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16954 72.302 NaN 89681 35 0 8227.7 0.263 + 18480 MQQEYHKDF 9 39 409.183443200871 NaN 0 409.18353271484375 PEAK HCD FTMS 0 0 0 16944 21375.125 0.4397502310443203 -3 0.07195281982421875 10 Unmodified _MQQEYHKDF_ REV__ENSG00000109193|ENST00000226444|SULT1E1 2.302733041254933 0.2840881193086663 2 {I|L} 1 -1 6.9897 0 0 0.85621 0 0 56.96085386186173 643.2834765644553 700.2443304263171 0 0 0 0 0 0 0 0 0 {I|L} 0.85621 - 4 + NaN NaN 94639.1 NaN 13362 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16955 72.305 NaN 216990 35 0 12503 0.261 + 7529 FYADHPFIF 9 62 578.7771999093197 1155.5398468854394 2 578.7767944335938 MULTI HCD FTMS 0 0 0 16944 31090.71875 0.3742152233182511 -3 0.07195281982421875 11 Unmodified _FYADHPFIF_ ENSG00000149257|ENST00000358171|SERPINH1 26.88365393820708 0.12808753336095696 2 C{I|L}{M(Oxidation (M))|F} 3 7 27.435 0 0 2.3742 0 0 774.37114150215 0 774.37114150215 0 16.223637474483468 0 0 0 0.4247425010840047 0 0 0 C{I|L}{M(Oxidation (M))|F} 2.3742 - 45 NaN NaN 122219.3 NaN 13363 3590 16944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16957 72.31 NaN 2678100 35 0 541700 0.327 + 6083 FPEELTQTF 9 127 556.2690312419072 1110.5235095506143 2 556.26904296875 MULTI HCD FTMS 0 0 0 16956 742053.6875 1 0 0 1 Unmodified _FPEELTQTF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 122.17920374332846 0.0010792739174387011 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F} 9 0 + 74.154 0 0 6.6774 6.6774 91.264 0 0 0 3.57440447713104 28.928235226414316 3.57440447713104 12.460762528683688 0 2.2302046884880937 1.2218487496163564 1.1978224950233995 0.3252574989159953 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}T[AG]T{M(Oxidation (M))|F};[{I|L}P]EE{M(Oxidation (M))|F}TQT{M(Oxidation (M))|F};{I|L}YDE[VP]QT{M(Oxidation (M))|F};[{I|L}P]EE{M(Oxidation (M))|F}T[AG]T{M(Oxidation (M))|F};{I|L}YDE{I|L}[NP]T{M(Oxidation (M))|F};{I|L}YDEQPVT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[EP]{M(Oxidation (M))|F}TQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ESTS[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DTTS[VP]T{M(Oxidation (M))|F} 6.6774;5.5553;5.4793;4.8806;4.3572;4.2025;3.8969;3.8484;3.4333;3.358 +;-;-;-;-;-;-;-;-;- + 7357 NaN NaN 517158.4 NaN 13364 3591 16956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16958 72.315 NaN 986520 35 0 194520 0.261 -1 YPQKHMRLF 9 86 618.3213275062147 1234.6281020792294 2 618.3214111328125 MULTI HCD FTMS 0 0 0 16956 357637.75 0.04978106854307752 19 -0.55059814453125 2 Oxidation (M) _YPQKHM(Oxidation (M))RLF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 10.823927491677226 0.26684000660059787 2 YYPEY 5 -1 57.779 0 0 4.6799 0 0 0 516.3195894830686 516.3195894830686 36.12395659563255 0 0 0 0 1.274227503252014 2 0 0 YYPEY 4.6799 - 395 + NaN NaN 244486.7 NaN 13365 3591 16956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16959 72.318 NaN 320850 35 0 89303 0.262 -1 FPANVMDVI 9 38 511.25480385671625 1020.4950547802325 2 511.2547607421875 MULTI HCD FTMS 0 0 0 16956 244512.984375 0.34385417472348984 -11 0.3177947998046875 3 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 13.042465956692817 0.2476723265019929 2 {M(Oxidation (M))|F}DV{I|L} 4 -1 32.735 0 0 3.2078 0 0 528.2714100568375 0 528.2714100568375 0 32.735097166722156 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}DV{I|L} 3.2078 + + 16 NaN NaN 141585.7 NaN 13366 3591 16956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16960 72.322 NaN 342090 35 0 31841 0.261 + 13285 KYMDINFDF 9 75 596.7711176425278 1191.5276823518554 2 596.77099609375 MULTI HCD FTMS 0 0 0 16956 183599.953125 0.055852953107768166 19 -0.55059814453125 4 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 53.31671820480216 0.026930930319421505 2 D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 3 60.684 0 0 5.0929 0 0 422.199510642775 0 422.199510642775 0 45.70107520596089 0 0 0 2.2134679910804405 0 0 0.28872548999643577 + D{I|L}N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.0929 + + 597 NaN NaN 155322.6 NaN 13367 3591 16956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16961 72.325 NaN 248560 35 0 42766 0.261 -1 PSYDMSPAML 10 59 564.2393502757736 1126.4641476183472 2 564.2394409179688 MULTI HCD FTMS 0 0 0 16956 58820.73828125 0.7199453442182085 4 -0.11492919921875 5 Oxidation (M) _PSYDMSPAM(Oxidation (M))L_ ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1 25.399314129420986 0.2735354021946395 2 D{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[PA]{M(Oxidation (M))|F} 7 -1 35.577 0 0 3.1583 0 0 347.14854628730626 0 347.14854628730626 0 19.378713199345725 0 0 0 1.4247425010840047 0 1.25 0 D{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[PA]{M(Oxidation (M))|F} 3.1583 - 74 NaN NaN 139257.1 NaN 13368 3591 16956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16963 72.33 NaN 3038600 35 0 426730 0.327 + 25876 SMTRYFYLF 9 104 622.2946879862326 1242.574823039265 2 622.294677734375 MULTI HCD FTMS 0 0 0 16962 1423494.375 0.6026307890726752 -2 0.05881500244140625 1 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 63.960520009940105 0.0120409805053046 2 SY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 6 3 69.073 0 0 5.5589 0 0 404.18528945136876 0 404.18528945136876 0 45.26084705832169 0 0 0 1.7302046884880937 0 1.110924374808178 0 SY{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5.5589 - 2487 NaN NaN 570554.8 NaN 13369 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16964 72.334 NaN 1523900 35 0 155790 0.261 + 17192 LYMPKLLYF 9 90 602.3278316335578 1202.6411103339155 2 602.3137817382812 MULTI HCD FTMS 0 0 0 16962 450887.40625 0.46458460909732613 -1 0.0195770263671875 2 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 61.357469665136826 0.01568246967499496 2 [Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F} 9 0 + 62.475 0 0 5.1948 5.1948 88.579 0 0 0 13.586127766899025 37.41399007561462 13.586127766899025 11.7288529850385 0 1.742992819099939 1.5228787452803376 0 0.3494850021680094 + + [Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{M(Oxidation (M))|F}{I|L};[Y{I|L}]{M(Oxidation (M))|F}PY[K{I|L}]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PY[K{I|L}]{M(Oxidation (M))|F}{I|L};[KP]{I|L}{I|L}Y{M(Oxidation (M))|F}{I|L}Y{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[Y{I|L}]{I|L}{I|L}Y{M(Oxidation (M))|F};[KP]{I|L}{I|L}Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[Y{I|L}]{I|L}Y{I|L}{M(Oxidation (M))|F};[KP]{I|L}{I|L}Y{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 5.1948;4.2195;3.2819;3.2036;2.2659;2.2479;1.8512;1.2727;0.87595;0.33504 +;-;-;-;-;-;-;-;-;- + 1210 NaN NaN 332651.7 NaN 13370 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16965 72.338 NaN 574730 35 0 68558 0.264 -1 PDGSSKGC 8 56 404.1696931571729 806.3248333811458 2 404.1700439453125 MULTI HCD FTMS 0 0 0 16962 536849.5 0.06411200461831378 15 -0.44257354736328125 3 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 H 1 -1 3.9794 0 0 0.49352 0 0 236.09974900790206 430.1350023878717 666.2347513957737 0 0 0 0 0 0 0 0 0 H 0.49352 - 8 + NaN NaN 175528.8 NaN 13371 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16966 72.341 NaN 852290 35 0 98077 0.261 + 3062 EAFVWEPAM 9 73 548.2445871423743 1094.4746213515484 2 548.2444458007812 MULTI HCD FTMS 0 0 0 16962 282885.21875 0.7635797912057546 1 -0.03287506103515625 4 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 92.8221339359638 0.0044520161739443126 2 ETC{I|L}WEPA{M(Oxidation (M))|F} 9 3 + 79.862 0 0 7.2968 7.2968 87.709 0 0 0 60.9876721558821 8.696662315049934 8.696662315049934 3.4948500216800937 0 1.2302046884880937 0 0.6747425010840047 0 ETC{I|L}WEPA{M(Oxidation (M))|F};ETCEW{I|L}PA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}VWEPA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}DW{I|L}PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PVWEPA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PDW{I|L}PA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PV{[DA]|[EG]}EPA{M(Oxidation (M))|F};E[W{M(Oxidation (M))|F}]{[DA]|[EG]}{I|L}PA{M(Oxidation (M))|F};E[W{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}EPA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PD{[DA]|[EG]}{I|L}PA{M(Oxidation (M))|F} 7.2968;6.9775;5.9704;5.6511;5.6343;5.3371;4.7929;4.5801;4.5307;4.4958 -;-;+;-;-;-;-;-;-;- + 1419 + NaN NaN 214692.7 NaN 13372 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16967 72.344 NaN 464150 35 0 57623 0.261 + 14513 LFDAVIRL 8 67 473.7897526212952 945.5649523093904 2 473.78961181640625 MULTI HCD FTMS 0 0 0 16962 179479.640625 0.47973659773875094 4 -0.12148284912109375 5 Unmodified _LFDAVIRL_ ENSG00000111602|ENST00000553532|TIMELESS;nc|ENSG00000111602|Q9UNS1-2|TIMELESS 51.629811660486645 0.11767674546718239 2 {I|L}{M(Oxidation (M))|F}DAV{I|L}{I|L}R 8 2 + 66.306 0 0 7.0123 7.0123 92.197 0 0 0 54.52291823037599 10.810935890735209 10.810935890735209 13.688270095171788 0 2.0356668758921828 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}DAV{I|L}{I|L}R;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAV{I|L}R{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}AV{I|L}R{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAVR{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}AVR{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}{I|L}[VG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[RE]|[WV]}[VG]{I|L}{I|L} 7.0123;5.5647;4.994;4.9833;4.4127;1.9407;1.3593 -;+;-;-;-;-;- + 227 + NaN NaN 153407 NaN 13373 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16968 72.348 NaN 245280 35 0 62406 0.261 -1 AFFAHLAC 8 41 468.723409460997 935.432265988794 2 468.72320556640625 MULTI HCD FTMS 0 0 0 16962 57977.3125 0.290287476719801 1 -0.03287506103515625 6 Carbamidomethyl (C) _AFFAHLAC(Carbamidomethyl (C))_ ENSG00000183495|ENST00000389561|EP400;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-5|EP400;nc|ENSG00000183495|Q96L91|EP400 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.42541 0 0 299.6125160882065 485.7274569147094 785.3399730029159 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.42541 + + 11 + NaN NaN 129721.4 NaN 13374 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16969 72.351 NaN 264400 35 0 17061 0.261 + 13192 KYLTEGLLQF 10 67 606.3371186913156 1210.659684449431 2 606.3372192382812 MULTI HCD FTMS 0 0 0 16962 78050.8515625 0.01281206418117522 27 -0.7862930297851562 7 Unmodified _KYLTEGLLQF_ ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant 48.07275321834293 0.08479850339886455 2 [YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F} 10 0 + 69.175 0 0 5.7138 5.7138 84.005 0 0 0 3.7751372576825304 56.20874125218391 3.7751372576825304 1.2371250542002343 0 1.7302046884880937 0 0.6747425010840047 0 + + [YK]{I|L}TEG{I|L}{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}Q{M(Oxidation (M))|F};[YK]{I|L}TEG{I|L}{I|L}[AG]{M(Oxidation (M))|F};[YK]{I|L}TEAV{I|L}[AG]{M(Oxidation (M))|F} 5.7138;5.6117;4.9569;4.8547 +;-;-;- + 491 NaN NaN 135912.1 NaN 13375 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16970 72.354 NaN 162850 35 0 16620 0.262 + 18332 MPFDDHLL 8 53 494.2338834211016 986.4532139090032 2 494.2337646484375 MULTI HCD FTMS 0 0 0 16962 36009.9140625 0.02268587015300793 27 -0.7862930297851562 8 Unmodified _MPFDDHLL_ REV__ENST00000416602.6_1_7:66770983-66785095:+|nuORF;REV__nc|ENSG00000291153|Q8TBR4|STAG3L4 18.13498045792455 0.4603629008820478 2 MP 2 -1 20.969 0 0 2.1257 0 0 0 755.334358709837 755.334358709837 5.0269751594335315 0 0 0 0 0 0 0 0 MP 2.1257 + + 72 + NaN NaN 107470.3 NaN 13376 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16971 72.358 NaN 127660 35 0 21380 0.261 -1 0 47 499.2749276316902 498.26765116509023 1 499.2765197753906 MULTI HCD FTMS 0 0 0 16962 18755.138671875 0.14125182076666015 8 -0.2261810302734375 9 NaN NaN 2 Q{I|L}{I|L} 3 -1 6.2321 0 0 1.2508 0 0 126.03087855942461 0 126.03087855942461 0 6.232084705535465 0 0 0 0 0 0 0 Q{I|L}{I|L} 1.2508 - 4 + NaN NaN 109203.4 NaN 13377 3592 16962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16973 72.363 NaN 2402700 35 0 409300 0.327 + 27235 SYNPLWLRI 9 106 581.3242008687558 1160.6338488043116 2 581.32470703125 MULTI HCD FTMS 0 0 0 16972 977333.3125 0.18915488553306697 -3 0.0916900634765625 1 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 128.93241758739586 0.0006697181619526092 2 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L} 9 0 + 79.708 0 0 6.8676 6.8676 88.827 0 0 0 8.226825097560422 16.478174818886373 8.226825097560422 8.226825097560422 0 2.6989700043360187 0 1.247425010840047 1.642159058960253 + + {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};[YN]SP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PN{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}WR{I|L};{[{M(Oxidation (M))|F}C]|[YS]}PGG{I|L}W{I|L}R{I|L};[TP]{M(Oxidation (M))|F}[QT]W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}{I|L}WR{I|L};[YT][PA]AAW{I|L}R{I|L};[TP]{M(Oxidation (M))|F}SAAW{I|L}R{I|L} 6.8676;6.1588;5.3181;4.9874;3.9092;3.7181;3.5299;3.1159;2.7476;2.6399 +;-;-;-;-;-;-;-;-;- + 1946 NaN NaN 466731.5 NaN 13378 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16974 72.367 NaN 415270 35 0 22392 0.261 + 9829 HYPDFLVQI 9 88 566.2953593408611 1130.576165748522 2 566.2955322265625 MULTI HCD FTMS 0 0 0 16972 87003.3046875 0.8467854777548567 -3 0.0916900634765625 2 Unmodified _HYPDFLVQI_ ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-3|PROM2 13.90604991867851 0.24021115267848145 2 VQ{I|L} 3 6 35.445 0 0 3.1352 0 0 772.3539418441378 0 772.3539418441378 0 17.971062485323515 0 0 0 0.9247425010840047 0 0 0 + VQ{I|L} 3.1352 + + 114 NaN NaN 167833.6 NaN 13379 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16975 72.371 NaN 211940 35 0 28434 0.261 -1 STFHDQIAM 9 54 533.2377256339946 1064.4608983347891 2 533.2501831054688 MULTI HCD FTMS 0 0 0 16972 48834.53125 0.9168476225336276 -1 0.03287506103515625 3 Oxidation (M) _STFHDQIAM(Oxidation (M))_ ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR 16.942295170755138 0.21397866736869717 2 A[HQ]DV{I|L}A{M(Oxidation (M))|F} 8 -1 36.86 0 0 3.4628 0 0 165.01407323888913 0 165.01407323888913 0 25.17728766960431 0 0 0 0.5 0 0 0 A[HQ]DV{I|L}A{M(Oxidation (M))|F} 3.4628 - 88 + NaN NaN 117556.8 NaN 13380 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16976 72.374 NaN 109470 35 0 21405 0.262 + 23235 RGERPALA 8 40 435.25119520700235 868.4878374808047 2 435.2509460449219 MULTI HCD FTMS 0 0 0 16972 34384.76171875 0.4038637966954234 14 -0.409698486328125 4 Unmodified _RGERPALA_ REV__ENST00000527236.2_8:145437923-145438016:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 4.6041 0 0 0.53013 0 0 148.1294684394672 604.2504366510374 752.3799050905045 0 0 0 0 0 0 0 0 0 {I|L} 0.53013 + + 3 + NaN NaN 101090.6 NaN 13381 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16977 72.377 NaN 116660 35 0 8687.2 0.261 + -1 CNCDVNCDAF 10 48 637.7137413422892 NaN 0 637.9697875976562 PEAK HCD FTMS 0 0 0 16972 9314.546875 0.4413059712196264 -1 0.03287506103515625 5 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))NC(Carbamidomethyl (C))DVNC(Carbamidomethyl (C))DAF_ REV__ENSG00000084453|ENST00000683939|SLCO1A2;REV__ENST00000463718.5_1_12:21428225-21457481:-|nuORF;REV__nc|ENSG00000084453|P46721-2|SLCO1A2 0.45834013312273997 0.33979201340002624 2 A 1 -1 5.4846 0 0 0.4307 0 0 131.9407140304782 1067.4060762994752 1199.3467903299534 0 0 0 0 0 0 0 0 0 A 0.4307 + + 2 + NaN NaN 117746 NaN 13382 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16978 72.381 NaN 138040 35 0 17363 0.261 -1 YLCPSTCSDY 10 46 633.244140625 NaN 0 633.244140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))PSTC(Carbamidomethyl (C))SDY_ ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;USP48|p.V594Wfs*12|1|0.1|ENSG00000090686|chr1:21721150-21721150|C/-|frameshift_variant 1.844237919475145 0.33860587697544825 2 {I|L} 1 -1 6.9897 0 0 0.55278 0 0 276.01028144355615 872.3587870629319 1148.369068506488 0 0 0 0 0 0 0 0 0 {I|L} 0.55278 + + 8 + NaN NaN 128074.4 NaN 13383 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16979 72.384 NaN 246690 35 0 44976 0.263 + 21335 PSVDLNQIL 9 51 499.77959068254063 997.5446284318813 2 499.77935791015625 MULTI HCD FTMS 0 0 0 16972 127190.90625 0.5428383698026702 -4 0.10128021240234375 7 Unmodified _PSVDLNQIL_ CON__A2VCT4 17.11289562659939 0.2125047172822487 2 TNQ{I|L}{I|L} 5 5 42.735 0 0 4.284 0 0 410.2164478986344 0 410.2164478986344 0 32.27752226111541 0 0 0 0.8494850021680094 0 0 0.3807196863200844 TNQ{I|L}{I|L} 4.284 - 84 NaN NaN 136291.4 NaN 13384 3593 16972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16981 72.389 NaN 2083600 35 0 328860 0.327 + 6158 FPEHIFPAL 9 96 535.7874179887401 1069.5602830442801 2 535.787353515625 MULTI HCD FTMS 0 0 0 16980 909801.375 0.05683392742959363 22 -0.6387939453125 1 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 97.07464715276575 0.004340583992084827 2 {I|L}MEH{I|L}{M(Oxidation (M))|F}P 7 4 48.765 0 0 4.5593 0 0 0 199.1088808649047 199.1088808649047 27.69495510367875 0 0 0 0 1.968765315847925 1.3979400086720375 0.5 0 {I|L}MEH{I|L}{M(Oxidation (M))|F}P 4.5593 - 2087 + NaN NaN 417528.4 NaN 13385 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16982 72.393 NaN 2102800 35 0 183730 0.261 + 17193 LYMPKLLYF 9 107 602.3278316335578 1202.6411103339155 2 602.3280029296875 MULTI HCD FTMS 0 0 0 16980 930125.9375 0.9583816028011349 1 -0.03623199462890625 2 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 81.61307344734483 0.005330412723537057 2 {I|L}Y{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F} 9 0 + 89.491 0 0 7.4412 7.4412 93.858 0 0 0 61.31105604145162 11.39506772603255 11.39506772603255 19.04540861824843 0 2.5356668758921828 2 0 0.5752574989159953 + + {I|L}Y{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}Y{M(Oxidation (M))|F};{I|L}Y{M(Oxidation (M))|F}{I|L}[KP]{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{I|L}{M(Oxidation (M))|F}Y;[Y{I|L}]{I|L}KP{M(Oxidation (M))|F}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L}{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}Y{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}KP{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}PK{I|L}{M(Oxidation (M))|F}Y{I|L} 7.4412;5.8576;5.8169;5.0261;4.9481;4.7948;4.596;4.2942;4.2074;4.1478 +;+;-;-;-;-;-;-;-;- + 1856 + NaN NaN 413642.2 NaN 13386 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16983 72.397 NaN 944340 35 0 105710 0.261 + 3063 EAFVWEPAM 9 87 548.2445871423743 1094.4746213515484 2 548.2446899414062 MULTI HCD FTMS 0 0 0 16980 288762.75 0.779444756171091 3 -0.07860565185546875 3 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 92.8221339359638 0.0044520161739443126 2 ETC{I|L}WEPA{M(Oxidation (M))|F} 9 3 + 69.862 0 0 6.3831 6.3831 86.055 0 0 0 52.79676584209078 4.488474775526186 4.488474775526186 3.4948500216800937 0 1.2302046884880937 0 0.6747425010840047 0 ETC{I|L}WEPA{M(Oxidation (M))|F};ETCEW{I|L}PA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}VWEPA{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}DW{I|L}PA{M(Oxidation (M))|F};ET[MT]W{I|L}[WE];E[W{M(Oxidation (M))|F}]{[DA]|[EG]}{I|L}PA{M(Oxidation (M))|F};E[W{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}EPA{M(Oxidation (M))|F};MVEQE[KQ]G{M(Oxidation (M))|F};MVC{M(Oxidation (M))|F}WPC[{I|L}P];MVE[AG]E[KQ]G{M(Oxidation (M))|F} 6.3831;6.0638;5.0165;4.6972;4.0384;3.6665;3.617;3.2655;2.9359;2.4242 -;-;+;-;-;-;-;-;-;- + 1454 + NaN NaN 232784.3 NaN 13387 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16984 72.4 NaN 613740 35 0 54361 0.261 + 19830 NYAWVYYHL 9 97 614.7931119449629 1227.5716709567257 2 614.793212890625 MULTI HCD FTMS 0 0 0 16980 300186.78125 0.00472548956385872 124 -3.32855224609375 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 144.35026110057638 1.4798765981150827E-05 2 [YN]AWVYYH{I|L} 9 0 + 107.78 0 0 8.7796 8.7796 95.724 0 0 0 17.728787452803374 16.478174818886373 16.478174818886373 17.728787452803374 0 2.774227503252014 1.6989700043360187 0 2.0471062485323515 + + [YN]AWVYYH{I|L};NYAWVYYH{I|L};[YN]AWVW[YN]{I|L};NYA[{M(Oxidation (M))|F}V]VN[NG][KC];{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}T]{[SA]|[TG]}YYH{I|L};[WY]ANVYYH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WY][{M(Oxidation (M))|F}T][QA]YH{I|L} 8.7796;7.3354;6.5192;3.9918;3.1115;3.0262;2.522;0.36566 +;+;-;-;-;-;-;- + 1065 NaN NaN 180279.8 NaN 13388 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16985 72.404 NaN 278320 35 0 25349 0.263 -1 VPMEDINL 8 62 473.73125633104536 945.4479597288907 2 473.7309265136719 MULTI HCD FTMS 0 0 0 16980 146965.40625 0.19229881929191536 22 -0.6387939453125 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 11.640296217721598 0.50814828952472 2 EDAV{I|L}{I|L}R 7 -1 36.419 0 0 3.852 0 0 130.9788430096806 0 130.9788430096806 0 6.413960427940992 0 0 0 0 0 0 0 EDAV{I|L}{I|L}R 3.852 - 217 + NaN NaN 123105.2 NaN 13389 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16986 72.407 NaN 528980 35 0 75062 0.261 + 19904 NYFHLAVAF 9 71 541.278119083765 1080.5416852343299 2 541.2769775390625 MULTI HCD FTMS 0 0 0 16980 302200.8125 0.632597607407987 -2 0.05912017822265625 6 Unmodified _NYFHLAVAF_ DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENSG00000134516|ENST00000520908|DOCK2;ENSG00000147459|ENST00000276440|DOCK5;ENSG00000150760|ENST00000623213|DOCK1;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1 70.71552829651908 0.008856681705782516 2 AVA{M(Oxidation (M))|F} 4 5 51.186 0 0 4.737 0 0 674.3172474591812 0 674.3172474591812 0 42.33410649039925 0 0 0 1.9247425010840047 0 0 0 + AVA{M(Oxidation (M))|F} 4.737 + + 138 NaN NaN 172234.4 NaN 13390 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16987 72.41 NaN 166850 35 0 28965 0.261 + 7905 FYVPAEPKLAF 11 64 641.3478634252766 1280.6811739173531 2 641.3478393554688 MULTI HCD FTMS 0 0 0 16980 58632.7734375 0.18898785541324029 8 -0.23268890380859375 7 Unmodified _FYVPAEPKLAF_ ENSG00000147604|ENST00000352983|RPL7;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000461190.1_1_3:123871117-123871351:-|nuORF 10.799506525563784 0.36298595732910816 2 [YV]{M(Oxidation (M))|F} 3 8 26.427 0 0 2.0635 0 0 0 868.4590419195594 868.4590419195594 13.979400086720373 0 0 0 0 0.5 1.6989700043360187 0 0 [YV]{M(Oxidation (M))|F} 2.0635 - 34 NaN NaN 111113.9 NaN 13391 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16988 72.414 NaN 76584 35 0 8412.7 0.264 + 14948 LLGRRNGG 8 45 421.7514557439326 841.4883585546652 2 421.7513122558594 MULTI HCD FTMS 0 0 0 16980 64809.84375 0.7744126414415867 1 -0.03623199462890625 8 Unmodified _LLGRRNGG_ ENST00000588221.5_1_19:9530876-9545835:-|nuORF;ENST00000588933.5_1_19:9544893-9545835:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 2.019 0 0 676.4096212273199 0 676.4096212273199 0 16.90105620855803 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.019 - 2 + NaN NaN 103432.3 NaN 13392 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16989 72.417 NaN 181860 35 0 18611 0.261 -1 FPSNLVTEML 10 65 583.7900835984007 1165.5656142636012 2 583.7922973632812 MULTI HCD FTMS 0 0 0 16980 32503.12109375 0.40498609746144826 1 -0.03623199462890625 9 Oxidation (M) _FPSNLVTEM(Oxidation (M))L_ ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10 16.565877749689598 0.3561603856738253 2 TVTE{M(Oxidation (M))|F}{I|L} 6 -1 46.252 0 0 3.9682 0 0 457.2400074689469 0 457.2400074689469 0 40.767580130772515 0 0 0 1.2887254899964358 0 0 0 TVTE{M(Oxidation (M))|F}{I|L} 3.9682 - 89 NaN NaN 108970.6 NaN 13393 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16990 72.42 NaN 144650 35 0 14349 0.261 + 12591 KTSSDEYEEAL 11 47 636.2863387784976 1270.558124623795 2 636.2869262695312 MULTI HCD FTMS 0 0 0 16980 75026.4765625 0.5076272624389543 -4 0.1179351806640625 10 Unmodified _KTSSDEYEEAL_ REV__ENSG00000143624|ENST00000318967|INTS3;REV__nc|ENSG00000143624|Q68E01-3|INTS3;REV__nc|ENSG00000143624|Q68E01-4|INTS3;REV__nc|ENSG00000143624|Q68E01|INTS3 4.5288652416199255 0.3990586020344083 2 VA{I|L} 3 -1 31.198 0 0 2.4554 0 0 969.3575306623062 0 969.3575306623062 0 25.713337517843655 0 0 0 0.5 0 0 0 VA{I|L} 2.4554 - 10 NaN NaN 108375 NaN 13394 3594 16980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16992 72.425 NaN 814960 35 0 101310 0.326 + -1 VGYVGLMEIV 10 77 548.2913334998575 NaN 0 548.2732543945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _VGYVGLM(Oxidation (M))EIV_ REV__ENSG00000110427|ENST00000658780|KIAA1549L;REV__nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L 11.640296217721598 0.3302218087712401 2 VC{I|L}SVEPA 8 -1 36.566 0 0 3.3407 0 0 131.13151979183039 162.02300440006096 293.15452419189137 0 0 0 0 0 0 0 0.6747425010840047 0 VC{I|L}SVEPA 3.3407 - 730 + NaN NaN 205519 NaN 13395 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16993 72.43 NaN 501140 35 0 59760 0.261 + 23393 RLCEESGLRL 10 86 588.3150304817015 1174.6155080302028 2 588.3137817382812 MULTI HCD FTMS 0 0 0 16991 209931.9375 0.5842777290528536 -1 0.03623199462890625 2 Unmodified _RLCEESGLRL_ REV__SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|37|3|sense 31.26834338654808 0.2211790902911672 2 QEPWR{I|L} 6 -1 38.747 0 0 3.2987 0 0 347.1842518537125 0 347.1842518537125 0 17.694342133510066 0 0 0 0.8182503180159344 0 0.7059771852360797 0.2614393726401688 QEPWR{I|L} 3.2987 - 593 NaN NaN 160546.1 NaN 13396 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16994 72.433 NaN 492650 35 0 22714 0.261 + 5646 FNDLISCIRI 10 87 597.3205763911199 1192.6265998490396 2 597.3196411132812 MULTI HCD FTMS 0 0 0 16991 227761.40625 0.6106223872547841 -1 0.03623199462890625 3 Unmodified _FNDLISCIRI_ ENSG00000196935|ENST00000355086|SRGAP1;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;SRGAP1|p.D607H|1|0.11|ENSG00000196935|chr12:64108937-64108937|G/C|missense_variant 28.494509381512117 0.24525010509582015 2 [NP]{I|L}YS{[MS]|[{M(Oxidation (M))|F}A]}{I|L}R{I|L} 10 5 + 39.191 0 0 3.2861 3.2861 82.062 0 0 0 4.16406972134444 4.16406972134444 4.16406972134444 4.16406972134444 0 1 0 0.5752574989159953 0.535666875892183 [NP]{I|L}YS{[MS]|[{M(Oxidation (M))|F}A]}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NE{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]{[MS]|[{M(Oxidation (M))|F}A]}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NE{I|L}{I|L}WR{I|L};[YG][SG]E{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGE{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NE{I|L}[VS]{I|L}R{I|L};[YG][SG]E{I|L}{I|L}WR{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DVV{[MS]|[{M(Oxidation (M))|F}A]}{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGE{I|L}{I|L}WR{I|L} 3.2861;2.937;2.6262;2.6178;2.5883;2.1649;2.1059;2.0645;2.0272;1.8457 -;-;-;-;-;-;-;-;-;- 623 NaN NaN 172678.8 NaN 13397 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16995 72.436 NaN 314370 35 0 21475 0.261 -1 FISMFRTLL 9 79 572.3137601846748 1142.6129674361496 2 572.3264770507812 MULTI HCD FTMS 0 0 0 16991 19462.220703125 0.39691865010669575 18 -0.5141067504882812 4 Oxidation (M) _FISM(Oxidation (M))FRTLL_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|72 9.38312468134398 0.279288223203164 2 PYYS 4 -1 43.721 0 0 3.8264 0 0 0 629.4029024713499 629.4029024713499 15.533349251486058 0 0 0 0 0 2 0 0 PYYS 3.8264 - 173 + NaN NaN 124619.5 NaN 13398 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16996 72.44 NaN 219890 35 0 28859 0.261 + 6180 FPELDSPQL 9 61 523.2637268453352 1044.5129007574703 2 523.2637939453125 MULTI HCD FTMS 0 0 0 16991 79694.890625 0.508313341529375 -5 0.15416717529296875 5 Unmodified _FPELDSPQL_ ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF 24.020572477871973 0.15282392193088168 2 S[QP]{I|L} 4 5 30.445 0 0 2.9148 0 0 601.2741785605689 0 601.2741785605689 0 22.998037644757048 0 0 0 1 0 0.4247425010840047 0 + S[QP]{I|L} 2.9148 + + 68 NaN NaN 123836.3 NaN 13399 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16997 72.443 NaN 256010 35 0 24019 0.261 + 3102 EALAELEEI 9 65 508.7606874543301 1015.5068219754602 2 508.76080322265625 MULTI HCD FTMS 0 0 0 16991 70069.8671875 0.693938142166693 -2 0.06247711181640625 6 Unmodified _EALAELEEI_ REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant 43.85829265575387 0.04763305254408404 2 {[QN]|[E{I|L}]|[KN]}AAE{I|L}EE{I|L} 9 -1 + 50.383 0 0 4.9614 4.9614 83.152 0 0 0 7.776046488436862 32.424462175599814 7.776046488436862 1.9887779833418193 0 1.274227503252014 0 0.6694451763165201 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}AAE{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}EAA{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}E{I|L}AAEE{I|L};[VP][WM]{I|L}EE{I|L};{[QN]|[E{I|L}]|[KN]}EVREKN;{[QN]|[E{I|L}]|[KN]}[RD]{I|L}EKN;{[QN]|[E{I|L}]|[KN]}[YN][HV]E{I|L};{[QN]|[E{I|L}]|[KN]}E{I|L}[RD]KN;{[QN]|[E{I|L}]|[KN]}[YN][HV]KN;{[QN]|[E{I|L}]|[KN]}[YN]{I|L}[HD]{I|L} 4.9614;4.7655;4.5471;3.8324;3.6994;3.6573;2.8515;2.3536;1.7883;1.5452 -;-;-;-;-;-;-;-;-;- 161 NaN NaN 141195 NaN 13400 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 16998 72.446 NaN 214100 35 0 17139 0.261 -1 FCTGFGLGIVF 11 63 609.3035935780581 1216.592634222916 2 609.3020629882812 MULTI HCD FTMS 0 0 0 16991 26462.18359375 0.09196695481803238 9 -0.2521209716796875 7 Carbamidomethyl (C) _FC(Carbamidomethyl (C))TGFGLGIVF_ ENST00000481464.5_1_1:19927449-19952892:+|nuORF;ENST00000486890.5_1_1:19927449-19950128:+|nuORF 8.745405648335112 0.3805662881914433 2 AVV{M(Oxidation (M))|F} 4 -1 28.994 0 0 2.3832 0 0 782.3387928693375 0 782.3387928693375 0 21.445975936039293 0 0 0 0.7302046884880937 0 0 0 AVV{M(Oxidation (M))|F} 2.3832 - 30 NaN NaN 140833.2 NaN 13401 3595 16991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17000 72.451 NaN 1618400 35 0 279750 0.327 + 6084 FPEELTQTF 9 115 556.2690312419072 1110.5235095506143 2 556.2691650390625 MULTI HCD FTMS 0 0 0 16999 470859.71875 0.6345359192760565 5 -0.13750457763671875 1 Unmodified _FPEELTQTF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 114.20165948288297 0.0022564706844261533 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F} 9 0 + 77.014 0 0 6.9349 6.9349 91.788 0 0 0 3.946349163223715 42.91091137185069 3.946349163223715 12.703037561203843 0 2.2614393726401687 1.3010299956639813 0.9634679910804405 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}TQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EE{I|L}T[AG]T{M(Oxidation (M))|F};{M(Oxidation (M))|F}PEE{I|L}TQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}T]EQT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DTTS[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ESTS[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E[{I|L}T]E[AG]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SETS[VP]T{M(Oxidation (M))|F};[YG]PT{[ET]|[MV]}[VP]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VP]T{M(Oxidation (M))|F} 6.9349;5.791;5.7307;5.0673;4.0233;3.9876;3.9234;3.6919;3.6237;3.4271 +;-;+;-;-;-;-;-;-;- + 6571 NaN NaN 338191.6 NaN 13402 3596 16999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17001 72.456 NaN 241890 35 0 17919 0.261 + 18415 MPSVPDFETL 10 58 576.2683117017085 1150.522070470217 2 576.2677612304688 MULTI HCD FTMS 0 0 0 16999 96183.3984375 0.5690427278165326 -9 0.25225067138671875 2 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 41.8396318013385 0.12944265636084 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L} 10 0 + 45.647 0 0 3.9675 3.9675 81.481 0 0 0 1.249387366082999 5.509074688805811 1.249387366082999 1.249387366082999 0 1 0 0.7742275032520141 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L};{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[DP]{M(Oxidation (M))|F}ET{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}ET{I|L};{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}SET{I|L} 3.9675;3.8589;2.9021;2.059 +;-;-;- + 290 NaN NaN 129272.4 NaN 13403 3596 16999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17002 72.459 NaN 157830 35 0 26946 0.261 + 25140 SAIEDVQLL 9 49 494.27135169365386 986.5281504541077 2 494.2716064453125 MULTI HCD FTMS 0 0 0 16999 47624.8671875 0.9073993818026769 1 -0.01624298095703125 3 Unmodified _SAIEDVQLL_ ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP 19.361941925380144 0.1930734562688509 2 Q{I|L}{I|L} 3 6 36.198 0 0 3.6692 0 0 614.2894767959865 0 614.2894767959865 0 29.20818753952375 0 0 0 1 0 0 0 + Q{I|L}{I|L} 3.6692 + + 44 NaN NaN 116071.6 NaN 13404 3596 16999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17003 72.463 NaN 119550 35 0 5518.8 0.261 -1 IPDEIIDMV 9 55 530.7656332952063 1059.5167136572124 2 530.7657470703125 MULTI HCD FTMS 0 0 0 16999 9629.93359375 0.045331440636527484 26 -0.7499618530273438 4 Oxidation (M) _IPDEIIDM(Oxidation (M))V_ ENSG00000130520|ENST00000593829|LSM4 14.838274106304384 0.23215694253501695 2 {I|L}D{M(Oxidation (M))|F}V 4 -1 35.918 0 0 3.39 0 0 567.2903919904312 0 567.2903919904312 0 30.43305028184122 0 0 0 1 0 0 0 {I|L}D{M(Oxidation (M))|F}V 3.39 + + 20 NaN NaN 115553.6 NaN 13405 3596 16999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17005 72.467 NaN 2444000 35 0 432710 0.327 + 25877 SMTRYFYLF 9 96 622.2946879862326 1242.574823039265 2 622.2947387695312 MULTI HCD FTMS 0 0 0 17004 1317714.5 0.5578492917525618 3 -0.0884552001953125 1 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 63.960520009940105 0.0120409805053046 2 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 4 55.261 0 0 4.4473 0 0 491.2162037437508 0 491.2162037437508 0 21.437653735529942 0 0 0 1.8807196863200843 0 0 0 + Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.4473 + + 2132 NaN NaN 458245.9 NaN 13406 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17006 72.472 NaN 1770200 35 0 218110 0.261 + 17194 LYMPKLLYF 9 85 602.3278316335578 1202.6411103339155 2 602.3138427734375 MULTI HCD FTMS 0 0 0 17004 470835.71875 0.48513891785933494 4 -0.1212615966796875 2 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 57.47134341890925 0.0211188941628804 2 {I|L}Y{M(Oxidation (M))|F} 3 6 49.922 0 0 4.151 0 0 0 776.4352673010332 776.4352673010332 11.795065615788324 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 + {I|L}Y{M(Oxidation (M))|F} 4.151 + + 1020 + NaN NaN 364125.8 NaN 13407 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17007 72.475 NaN 602100 35 0 181860 0.262 -1 FPANVMDVI 9 52 511.25480385671625 1020.4950547802325 2 511.25494384765625 MULTI HCD FTMS 0 0 0 17004 344187.5625 0.4840247259508223 -5 0.137725830078125 3 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}DV{I|L} 4 -1 44.993 0 0 4.4089 0 0 528.2693958966812 0 528.2693958966812 0 27.034021960761265 0 0 0 1.305462187404089 0 0 0 {M(Oxidation (M))|F}DV{I|L} 4.4089 + + 78 NaN NaN 183426.1 NaN 13408 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17008 72.479 NaN 445370 35 0 85794 0.261 -1 0 69 618.3213275062147 1234.6281020792294 2 618.3214111328125 MULTI HCD FTMS 0 0 0 17004 160444.8125 0.022332972982979902 25 -0.7337188720703125 4 NaN NaN 2 YY 2 -1 39.196 0 0 3.1747 0 0 0 905.4777407647905 905.4777407647905 14.953540565465708 0 0 0 0 0.4247425010840047 2 0 0 YY 3.1747 - 86 + NaN NaN 154009.1 NaN 13409 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17009 72.482 NaN 292220 35 0 38743 0.261 -1 VYMIRVYLL 9 67 593.3388200549566 1184.6630871767131 2 593.3392333984375 MULTI HCD FTMS 0 0 0 17004 142215.828125 0.2813116811404119 -8 0.2061309814453125 5 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 37.97399986684836 0.07464525285885698 2 [Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L} 9 -1 + 53.539 0 0 4.5194 4.5194 83.363 0 0 0 4.102445143395833 16.478174818886373 4.102445143395833 4.102445143395833 0 0.9436726795685342 1.3979400086720375 0 0 [Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[Y{I|L}]V{M(Oxidation (M))|F}RV{I|L}Y{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[Y{I|L}]V{M(Oxidation (M))|F}R[Y{I|L}]V{I|L};[YV]{I|L}{M(Oxidation (M))|F}R[Y{I|L}]V{I|L};[YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 4.5194;4.1731;3.4357;3.0894;2.3611;2.0148;1.2554 -;-;-;-;-;-;+ + 276 NaN NaN 139196.3 NaN 13410 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17010 72.485 NaN 228210 35 0 8592.5 0.261 -1 NIYGMVCYSC 10 71 613.2363173866975 1224.4580818401948 2 613.2369384765625 MULTI HCD FTMS 0 0 0 17004 49195.6015625 0.6474026526800277 1 -0.0327911376953125 6 Carbamidomethyl (C),Oxidation (M) _NIYGM(Oxidation (M))VC(Carbamidomethyl (C))YSC_ ENSG00000135960|ENST00000258443|EDAR;nc|ENSG00000135960|Q9UNE0-2|EDAR 6.2057823575117 0.44245551207394906 2 [YN]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}WN 7 -1 40.991 0 0 3.3477 0 0 0 273.98381361193236 273.98381361193236 27.331203658867693 0 0 0 0 0.9247425010840047 2 1.305462187404089 0 [YN]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}WN 3.3477 - 557 NaN NaN 128174.9 NaN 13411 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17011 72.489 NaN 140640 35 0 13686 0.261 -1 TYDEIGVMF 9 51 545.7422344710112 1089.4699160088223 2 545.7420654296875 MULTI HCD FTMS 0 0 0 17004 52475.6640625 0.677596258498975 4 -0.1212615966796875 7 Oxidation (M) _TYDEIGVM(Oxidation (M))F_ ENSG00000138031|ENST00000679454|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF;nc|ENSG00000138031|O60266-2|ADCY3 36.04419817259434 0.08350412372117409 2 WT{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 56.631 0 0 5.198 0 0 221.05678231917233 0 221.05678231917233 0 52.02684409496328 0 0 0 1.8494850021680094 0 0 0 WT{I|L}R{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.198 - 58 + NaN NaN 116368.3 NaN 13412 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17012 72.492 NaN 80680 35 0 3414.2 0.261 -1 LEQCQHRF 8 49 559.2641310310148 1116.5137091288295 2 559.262939453125 MULTI HCD FTMS 0 0 0 17004 8479.15234375 0.1659524988711796 4 -0.1212615966796875 8 Carbamidomethyl (C) _LEQC(Carbamidomethyl (C))QHRF_ ENSG00000073754|ENST00000368174|CD5L 5.230669730166228 0.5342319408533849 2 EW{[ES]|[DT]|[{I|L}C]}V{I|L} 6 -1 26.911 0 0 2.4103 0 0 355.1193104474625 0 355.1193104474625 0 14.147015257438689 0 0 0 0 0 0 0 EW{[ES]|[DT]|[{I|L}C]}V{I|L} 2.4103 - 31 NaN NaN 99511.6 NaN 13413 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17013 72.495 NaN 108490 35 0 12455 0.261 -1 FFDAELSQM 9 51 552.2396271809815 1102.464701428763 2 551.8118896484375 MULTI HCD FTMS 0 0 0 17004 33336.859375 0.4637585991856246 4 -0.1212615966796875 9 Oxidation (M) _FFDAELSQM(Oxidation (M))_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 11.494710602746466 0.2610445893512368 2 {I|L}SQ{M(Oxidation (M))|F} 4 -1 38.175 0 0 3.4627 0 0 609.2450891875094 0 609.2450891875094 0 32.69077524932108 0 0 0 0.9247425010840047 0 0 0 {I|L}SQ{M(Oxidation (M))|F} 3.4627 + + 19 NaN NaN 111525.2 NaN 13414 3597 17004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17015 72.5 NaN 537930 35 0 67170 0.327 -1 PDGSSKGC 8 66 404.1696931571729 806.3248333811458 2 404.1700134277344 MULTI HCD FTMS 0 0 0 17014 447855.4375 0.053484095407254614 21 -0.6157760620117188 1 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}C(Carbamidomethyl (C))[RD] 6 -1 + 7.9048 0 0 0.98036 0.98036 82.912 0 0 0 7.420299789533404 3.9524249272868417 3.9524249272868417 7.904849854573685 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}C(Carbamidomethyl (C))[RD] 0.98036 - 12 + NaN NaN 174595.8 NaN 13415 3598 17014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17016 72.505 NaN 348840 35 0 49654 0.261 -1 KYLACSRHSE 10 65 625.8008641144778 1249.5871752957555 2 625.8011474609375 MULTI HCD FTMS 0 0 0 17014 117012.3828125 0.7056008679630522 -1 0.0327911376953125 2 Carbamidomethyl (C) _KYLAC(Carbamidomethyl (C))SRHSE_ ENST00000477541.1_1_6:32918038-32918221:-|nuORF 12.240655878213236 0.39661705172222156 2 T{M(Oxidation (M))|F}{I|L} 3 -1 32.945 0 0 2.6365 0 0 870.3764959448521 0 870.3764959448521 0 13.680540824916388 0 0 0 0.8252574989159953 0 0 0 T{M(Oxidation (M))|F}{I|L} 2.6365 - 113 NaN NaN 140142.1 NaN 13416 3598 17014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17017 72.508 NaN 265150 35 0 31527 0.261 -1 RWFIWLMAA 9 57 605.3165194452938 1208.6184859573875 2 605.3161010742188 MULTI HCD FTMS 0 0 0 17014 102111.90625 0.9648069016751054 -1 0.0327911376953125 3 Oxidation (M) _RWFIWLM(Oxidation (M))AA_ ENSG00000108960|ENST00000262065|MMD 7.910154910731844 0.2910521888787154 2 Y{I|L}A{[MS]|[{M(Oxidation (M))|F}A]} 5 -1 32.218 0 0 2.6657 0 0 625.3712025373062 0 625.3712025373062 0 20.536049848239344 0 0 0 1.5 0 0 0 Y{I|L}A{[MS]|[{M(Oxidation (M))|F}A]} 2.6657 - 56 NaN NaN 132673 NaN 13417 3598 17014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17018 72.512 NaN 267070 35 0 14229 0.261 -1 FPDFVRDFM 9 71 595.2715474465427 1188.5285419598854 2 595.2723999023438 MULTI HCD FTMS 0 0 0 17014 22353.869140625 0.2547961925390799 -7 0.190093994140625 4 Oxidation (M) _FPDFVRDFM(Oxidation (M))_ ENSG00000213339|ENST00000250237|QTRT1;ENST00000587500.5_1_19:10823370-10823943:+|nuORF 26.020703789607367 0.13554323117744113 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}Y[EC][R{I|L}] 9 -1 + 45.864 0 0 3.8589 3.8589 81.375 0 0 0 35.642040441009044 0.9151498112134959 0.9151498112134959 1.2763625255165323 0 0.6989700043360187 0 0 0 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}Y[EC][R{I|L}];{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F};[MD]{I|L}{M(Oxidation (M))|F}Y[EC][R{I|L}];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[MD]{I|L}{M(Oxidation (M))|F}Y{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{M(Oxidation (M))|F}{[HG]|PP}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y{[HG]|PP}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{[RE]|[WV]}{[WN]|[YH]}PE 3.8589;3.7515;2.0064;1.5857;1.5539;1.4784;1.4376;1.0473;0.98502;0.69926 -;-;-;-;-;-;-;-;-;- 140 + NaN NaN 124551.2 NaN 13418 3598 17014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17019 72.515 NaN 162760 35 0 27841 0.261 -1 MEAYWTVL 8 53 514.7416128901307 1027.4686728470613 2 514.7416381835938 MULTI HCD FTMS 0 0 0 17014 35006.55859375 0.3303977804378337 -7 0.190093994140625 5 Oxidation (M) _M(Oxidation (M))EAYWTVL_ CACNA2D4|p.A742V|1|0.22|ENSG00000151062|chr12:1853972-1853972|G/A|missense_variant 4.75600775471527 0.5349361699807423 2 V{I|L} 2 -1 18.583 0 0 1.8087 0 0 797.297655174025 0 797.297655174025 0 3.0102999566398125 0 0 0 0 0 0 0 V{I|L} 1.8087 + + 6 NaN NaN 111605.8 NaN 13419 3598 17014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17020 72.518 NaN 198380 35 0 13835 0.261 + 20700 PFSELESML 9 61 526.75255831693 NaN 0 526.3081665039062 PEAK HCD FTMS 0 0 0 17014 6934.2587890625 0.14181269976697017 18 -0.5273971557617188 6 Unmodified _PFSELESML_ REV__ENSG00000144354|ENST00000306721|CDCA7;REV__ENST00000435616.5_1_2:174224078-174228757:+|nuORF;REV__ENST00000496441.5_1_2:174219691-174228743:+|nuORF;REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7;REV__nc|ENSG00000144354|Q9BWT1-4|CDCA7;REV__nc|ENSG00000144354|Q9BWT1-5|CDCA7;REV__nc|ENSG00000144354|Q9BWT1-6|CDCA7;REV__nc|ENSG00000144354|Q9BWT1|CDCA7 3.944395688203298 0.27613285122220627 2 M 1 -1 2.4743 0 0 0.23531 0 0 131.09763264772874 786.3119600885374 917.4095927362662 0 0 0 0 0 0 0 0 0 M 0.23531 + + 1 + NaN NaN 117968.2 NaN 13420 3598 17014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17022 72.523 NaN 10806000 35 0 1450300 0.327 + 27236 SYNPLWLRI 9 113 581.3242008687558 1160.6338488043116 2 581.3244018554688 MULTI HCD FTMS 0 0 0 17021 4516163.5 0.8740665840049477 3 -0.09845733642578125 1 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 148.26817274609934 1.0657023776783114E-05 2 SYNP{I|L}W{I|L}{I|L}R 9 2 + 94.612 0 0 8.1518 8.1518 89.677 0 0 0 4.824185794871468 4.824185794871468 4.824185794871468 4.824185794871468 0 2.278659694992122 2 0 0.3054621874040891 SYNP{I|L}W{I|L}{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}R{I|L};SYGGP{I|L}W{I|L}{I|L}R;SYNP{I|L}{I|L}W{I|L}R;[YN]SP{I|L}W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}WR{I|L}{I|L};SYGGP{I|L}{I|L}W{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}PN{I|L}W{I|L}R{I|L};[YN]SP{I|L}WR{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}R{I|L} 8.1518;7.7361;7.3584;7.1836;7.1108;6.6686;6.3902;6.1217;6.0432;5.7702 -;+;-;-;-;-;-;-;-;- + 3187 + NaN NaN 940544.9 NaN 13421 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17023 72.528 NaN 1706100 35 0 251130 0.261 + 6159 FPEHIFPAL 9 104 535.7874179887401 1069.5602830442801 2 535.7874145507812 MULTI HCD FTMS 0 0 0 17021 518246.09375 0.032374056241515216 27 -0.7804946899414062 2 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 85.35673624503755 0.00464763827098139 2 {I|L}MEH{I|L}{M(Oxidation (M))|F}P 7 4 49.851 0 0 4.6609 0 0 0 199.1089266412719 199.1089266412719 28.7808722168186 0 0 0 0 2.110924374808178 0.958607314841775 0.5 0 {I|L}MEH{I|L}{M(Oxidation (M))|F}P 4.6609 - 1435 + NaN NaN 342618.2 NaN 13422 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17024 72.531 NaN 282090 35 0 53280 0.261 + 21336 PSVDLNQIL 9 45 499.77959068254063 997.5446284318813 2 499.7796325683594 MULTI HCD FTMS 0 0 0 17021 169013.046875 0.7213311827551137 2 -0.06563568115234375 3 Unmodified _PSVDLNQIL_ CON__A2VCT4 17.11289562659939 0.2125047172822487 2 {I|L}[VG]NQ{I|L}{I|L} 7 4 46.286 0 0 4.64 0 0 242.1020985334 0 242.1020985334 0 46.28607912182254 0 0 0 0.8807196863200843 0 0 0.4247425010840047 {I|L}[VG]NQ{I|L}{I|L} 4.64 - 47 NaN NaN 125793.4 NaN 13423 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17025 72.534 NaN 327210 35 0 18640 0.261 + 13286 KYMDINFDF 9 75 596.7711176425278 1191.5276823518554 2 596.7711791992188 MULTI HCD FTMS 0 0 0 17021 67121.0234375 0.02041889069572765 27 -0.7804946899414062 4 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 26.020703789607367 0.13554323117744113 2 YN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5 4 40.974 0 0 3.4388 0 0 487.25276381660314 0 487.25276381660314 0 25.71501508154121 0 0 0 1.079689690656103 0 0 0 YN{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.4388 - 335 NaN NaN 140615 NaN 13424 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17026 72.538 NaN 180270 35 0 15638 0.261 + 33325 YFVIQPFSPLA 11 60 641.3478634252766 1280.6811739173531 2 641.8513793945312 MULTI HCD FTMS 0 0 0 17021 48528.62109375 0.2085067823089396 15 -0.45227813720703125 5 Unmodified _YFVIQPFSPLA_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89 12.240655878213236 0.35042917576941135 2 VEY 3 10 26.198 0 0 2.0456 0 0 871.4802639242345 0 871.4802639242345 0 13.010299956639813 0 0 0 1 0 0 0 VEY 2.0456 - 34 NaN NaN 118208.5 NaN 13425 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17027 72.541 NaN 138690 35 0 16747 0.264 + 21015 PLPEGWEI 8 55 470.7424453859744 939.4703378387488 2 470.7420654296875 MULTI HCD FTMS 0 0 0 17021 24166.732421875 0.07447421786634835 22 -0.6519546508789062 6 Unmodified _PLPEGWEI_ ENSG00000123124|ENST00000517970|WWP1;ENST00000466609.1_1_3:98377983-98378526:+|nuORF;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-3|WWP1;nc|ENSG00000123124|Q9H0M0-6|WWP1;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant 16.942295170755138 0.46913822049235215 2 WE{I|L} 3 5 30.93 0 0 3.2923 0 0 493.2533724464707 0 493.2533724464707 0 25.445312593723983 0 0 0 0.7742275032520141 0 0 0 + WE{I|L} 3.2923 + + 43 NaN NaN 107682.6 NaN 13426 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17028 72.544 NaN 130660 35 0 11981 0.261 -1 0 42 426.11603356107145 850.2175141889429 2 426.1161193847656 MULTI HCD FTMS 0 0 0 17021 32767.201171875 0.9366454275299321 -1 0.02283477783203125 7 NaN NaN 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 3 -1 19.922 0 0 2.3431 0 0 0 440.0138148083367 440.0138148083367 19.921525057367408 0 0 0 0 0 1.3979400086720375 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 2.3431 - 12 NaN NaN 111287.1 NaN 13427 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17029 72.548 NaN 77513 35 0 11414 0.261 + 23184 RFLDDLGLKF 10 43 408.56412671113674 1222.6705507336103 3 408.5645446777344 MULTI HCD FTMS 0 0 0 17021 15217.375 0.005377170486149852 52 -1.403594970703125 8 Unmodified _RFLDDLGLKF_ ENSG00000046604|ENST00000261590|DSG2 5.047519993296601 0.4485863789024576 2 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.2665 0 0 1057.5914166777493 0 1057.5914166777493 0 3.4948500216800937 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2665 + + 7 + NaN NaN 102054.3 NaN 13428 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17030 72.551 NaN 1114500 35 0 179160 0.261 + 21104 PNLRPPMS 8 84 456.2426645991911 910.4707762651822 2 456.7441711425781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _PNLRPPMS_ REV__ENSG00000117625|ENST00000419091|RCOR3;REV__ENST00000526255.1_1_1:211485798-211487107:+|nuORF;REV__nc|ENSG00000117625|Q9P2K3|RCOR3 24.67388899826682 0.4122521268485776 2 PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}M[R{I|L}] 7 -1 + 69.078 0 0 7.587 7.587 87.063 0 0 0 6.281198774959535 0.7795501485934864 0.7795501485934864 0.7795501485934864 0 1.3494850021680094 1.6989700043360187 0.28872548999643577 0 PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}M[R{I|L}];PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}PR{M(Oxidation (M))|F};PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}RP;[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PR{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}RP;PT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}R{M(Oxidation (M))|F};[TP][RN]P{[ET]|[MV]}P;[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F}PR{M(Oxidation (M))|F};{M(Oxidation (M))|F}TP{M(Oxidation (M))|F}M[R{I|L}];{M(Oxidation (M))|F}TP{M(Oxidation (M))|F}PR{M(Oxidation (M))|F} 7.587;7.5014;7.4347;6.8971;6.6302;5.8539;3.7079;3.5832;3.4194;3.3338 -;-;-;-;-;-;-;-;-;- 459 + NaN NaN 265997.3 NaN 13429 3599 17021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17032 72.556 NaN 695420 35 0 60985 0.327 + 19831 NYAWVYYHL 9 78 614.7931119449629 1227.5716709567257 2 614.7927856445312 MULTI HCD FTMS 0 0 0 17031 263250.5 0.004144044868499986 130 -3.3116912841796875 1 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 107.1870275148908 0.00340162908551068 2 [YN]AWVYYH{I|L} 9 0 + 109.08 0 0 8.8855 8.8855 96.763 0 0 0 24.672815280385834 16.478174818886373 16.478174818886373 27.487737688117235 0 2.8494850021680094 1.6989700043360187 0 1.675833702434617 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[NS]{M(Oxidation (M))|F}WVYYH{I|L};[MT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[HA]YH{I|L};[MT][KA]{M(Oxidation (M))|F}QQN{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 8.8855;6.6463;4.6956;1.2912;0.33521 +;-;-;-;- + 821 NaN NaN 204925.7 NaN 13430 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17033 72.56 NaN 575050 35 0 93225 0.261 + 23443 RLPLRLFLI 9 80 570.8846629459014 1139.7547729586026 2 570.8849487304688 MULTI HCD FTMS 0 0 0 17031 266245.40625 0.5684627441304375 -2 0.0556640625 2 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 42.09456458481378 0.05572955244001856 2 {I|L}R{I|L}PR{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 45.913 0 0 4.0283 4.0283 83.836 0 0 0 25.61583825354596 4.269403919028818 4.269403919028818 6.817496819840649 0 0.5484550065040281 1.0969100130080565 0 0.3807196863200844 {I|L}R{I|L}PR{I|L}{I|L}{I|L}{M(Oxidation (M))|F};R{I|L}{I|L}PR{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}RPR{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 4.0283;3.4301;3.1872 -;-;- 165 + NaN NaN 180577.3 NaN 13431 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17034 72.564 NaN 379620 35 0 18061 0.261 + 6046 FPDTPLEEW 9 83 567.260349979118 1132.506147025036 2 567.27880859375 MULTI HCD FTMS 0 0 0 17031 14857.6591796875 0.1664174382738331 9 -0.2754058837890625 3 Unmodified _FPDTPLEEW_ ENSG00000162779|ENST00000367618|AXDND1 7.289230182591677 0.29575926068275815 2 SW 2 8 20.969 0 0 1.8516 0 0 841.3850779177739 0 841.3850779177739 0 -3.2121122500096533 -3.2121122500096533 0 0 0 0 0 0 SW 1.8516 - 363 + NaN NaN 149534.6 NaN 13432 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17035 72.567 NaN 294240 35 0 75928 0.261 + 9654 HVDTWVIAL 9 47 527.2901693185413 1052.5657857038825 2 527.2904663085938 MULTI HCD FTMS 0 0 0 17031 130250.171875 0.6986117121897861 -5 0.130828857421875 4 Unmodified _HVDTWVIAL_ ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38 16.942295170755138 0.21397866736869717 2 T{M(Oxidation (M))|F}[QT]{I|L}A{I|L} 7 5 41.726 0 0 3.9642 0 0 260.11595351386876 0 260.11595351386876 0 27.746907182741367 0 0 0 1 0 0 0 T{M(Oxidation (M))|F}[QT]{I|L}A{I|L} 3.9642 - 83 NaN NaN 135725.4 NaN 13433 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17036 72.571 NaN 188720 35 0 19487 0.261 -1 VPMEDINL 8 53 473.73125633104536 945.4479597288907 2 473.731201171875 MULTI HCD FTMS 0 0 0 17031 109795.984375 0.14366400023683182 28 -0.7763519287109375 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 16.942295170755138 0.46913822049235215 2 {I|L}N{I|L} 3 -1 31.198 0 0 3.2998 0 0 587.2254911886398 0 587.2254911886398 0 6.997330205021726 0 0 0 0.5 0 0 0 {I|L}N{I|L} 3.2998 + + 77 NaN NaN 119064.2 NaN 13434 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17037 72.574 NaN 256330 35 0 28895 0.261 -1 IYKNMKKSP 9 54 562.8100679088534 1123.6055828845067 2 564.3099365234375 MULTI HCD FTMS 0 0 0 17031 56204.8203125 0.6398477965939494 -5 0.130828857421875 6 Oxidation (M) _IYKNM(Oxidation (M))KKSP_ tr|U7T3B9|U7T3B9_FUSNUCompetenceproteinComECOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00372PE=4SV=1 6.723162845929126 0.3000504726104499 2 KAQV[HM]VQ 8 -1 38.136 0 0 3.3941 0 0 0 199.10823999576408 199.10823999576408 12.954168023219523 0 0 0 0 0 0 0 0 KAQV[HM]VQ 3.3941 - 264 + NaN NaN 126303.2 NaN 13435 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17038 72.577 NaN 151880 35 0 10910 0.261 + 33326 YFVIQPFSPLA 11 53 641.3478634252766 1280.6811739173531 2 641.8492431640625 MULTI HCD FTMS 0 0 0 17031 63886.56640625 0.27449332154729544 16 -0.47173309326171875 7 Unmodified _YFVIQPFSPLA_ ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89 5.731851221503515 0.39378271418728467 2 [Y{M(Oxidation (M))|F}]V 3 8 15.458 0 0 1.207 0 0 0 868.4580348394812 868.4580348394812 5.536049848239344 0 0 0 0 0.5 0 0 0 + [Y{M(Oxidation (M))|F}]V 1.207 + + 34 NaN NaN 134535.4 NaN 13436 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17039 72.581 NaN 188320 35 0 16930 0.261 -1 CWILGEQYF 9 56 629.2850479046356 1256.555542876071 2 629.7872924804688 MULTI HCD FTMS 0 0 0 17031 39536.2890625 0.6612576759323934 4 -0.1212921142578125 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))WILGEQYF_ ENST00000534269.5_1_6:136590404-136595119:-|nuORF 5.731851221503515 0.3075653528928475 2 [YN]{I|L} 3 -1 27.447 0 0 2.1843 0 0 0 863.3431765032773 863.3431765032773 3.4331813463114713 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 2.1843 - 97 NaN NaN 121573.4 NaN 13437 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17040 72.584 NaN 673100 35 0 123200 0.261 + 29905 VFDPKVFTF 9 80 550.2948858009202 1098.5752186686402 2 550.796630859375 MULTI HCD FTMS 0 0 0 17031 67707.3671875 0.03653378862727625 -5 0.130828857421875 9 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 61.60191391372663 0.015340508911304802 2 V{M(Oxidation (M))|F}D 3 6 40.005 0 0 3.6415 0 0 0 734.3883916327599 734.3883916327599 -3.182503180159344 0 -3.182503180159344 0 0 1 0 0.3807196863200844 0 + V{M(Oxidation (M))|F}D 3.6415 + + 109 + NaN NaN 190983.2 NaN 13438 3600 17031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17042 72.589 NaN 993180 35 0 236580 0.327 + 26998 SYLPLAHMF 9 80 539.7734109206572 1077.5322689081142 2 539.7733764648438 MULTI HCD FTMS 0 0 0 17041 253865.0625 0.6136940258959706 -1 0.032806396484375 1 Unmodified _SYLPLAHMF_ ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000197142|Q9ULC5-4|ACSL5 77.98433622928108 0.006504613272346738 2 W{I|L}P{I|L}AHM{M(Oxidation (M))|F} 8 2 58.653 0 0 5.4432 0 0 64.03632746025637 0 64.03632746025637 0 54.67329742688328 0 0 0 2.7302046884880937 0 0 0 W{I|L}P{I|L}AHM{M(Oxidation (M))|F} 5.4432 - 481 + NaN NaN 247363.2 NaN 13439 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17043 72.593 NaN 534430 35 0 57333 0.261 + 19216 NITQSCQLRL 10 87 588.3150304817015 1174.6155080302028 2 588.3139038085938 MULTI HCD FTMS 0 0 0 17041 139792.09375 0.3890661328069418 5 -0.1474761962890625 2 Unmodified _NITQSCQLRL_ ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4 24.990960013464015 0.27735500881591096 2 NP[W{I|L}]{I|L}R{I|L} 7 6 31.19 0 0 2.6554 0 0 264.07441909004064 0 264.07441909004064 0 10.159488615773213 0 0 0 1.8494850021680094 0 0 0 NP[W{I|L}]{I|L}R{I|L} 2.6554 - 291 NaN NaN 178955.8 NaN 13440 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17044 72.597 NaN 282920 35 0 39242 0.261 + 6181 FPELDSPQL 9 61 523.2637268453352 1044.5129007574703 2 523.2637939453125 MULTI HCD FTMS 0 0 0 17041 75582.1484375 0.48208127435691367 1 -0.0328216552734375 3 Unmodified _FPELDSPQL_ ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF 41.8396318013385 0.056899836730939755 2 {M(Oxidation (M))|F}DSPQ{I|L} 6 3 45.265 0 0 4.3336 0 0 339.17881972480626 0 339.17881972480626 0 36.31305428125607 0 0 0 1 0 0.805462187404089 0 {M(Oxidation (M))|F}DSPQ{I|L} 4.3336 - 145 NaN NaN 131052.8 NaN 13441 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17045 72.6 NaN 212890 35 0 21368 0.261 + 1747 CLEMNESYVAI 11 58 636.2863387784976 1270.558124623795 2 636.2860717773438 MULTI HCD FTMS 0 0 0 17041 78422.96875 0.5306078435622013 3 -0.0884857177734375 4 Unmodified _CLEMNESYVAI_ REV__ENSG00000106772|ENST00000376718|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-2|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-3|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2;REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant;REV__PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant 6.630372943996041 0.3898421031449734 2 {M(Oxidation (M))|F}VA{I|L} 4 -1 33.928 0 0 2.6703 0 0 822.30473525215 0 822.30473525215 0 15.255762612236904 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}VA{I|L} 2.6703 - 31 NaN NaN 121169.8 NaN 13442 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17046 72.603 NaN 581310 35 0 45583 0.262 + 3064 EAFVWEPAM 9 86 548.2445871423743 1094.4746213515484 2 548.2447509765625 MULTI HCD FTMS 0 0 0 17041 86610.640625 0.23378434255725544 10 -0.2981719970703125 5 Oxidation (M) _EAFVWEPAM(Oxidation (M))_ ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 61.357469665136826 0.01568246967499496 2 MVC{I|L}WDP 7 7 54.549 0 0 4.984 0 0 0 247.0712069147094 247.0712069147094 26.801215327905354 0 0 0 0 1.6382104921644451 0 0.3252574989159953 0 MVC{I|L}WDP 4.984 - 1477 + NaN NaN 177534.2 NaN 13443 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17047 72.607 NaN 708120 35 0 68574 0.261 + -1 EPCPRTPKM 9 91 566.2691162995571 NaN 0 566.28515625 PEAK HCD FTMS 0 0 0 17041 7589.1494140625 0.7932259937360852 2 -0.068939208984375 6 Carbamidomethyl (C),Oxidation (M) _EPC(Carbamidomethyl (C))PRTPKM(Oxidation (M))_ REV__ENST00000358201.8_2_16:28936921-28936999:-|nuORF 13.90604991867851 0.22786006501039813 2 CVV{I|L}[VP]SC 8 -1 22.585 0 0 1.9978 0 0 165.04315630684738 162.05579553775627 327.0989518446037 0 0 0 0 0 0 0 1.0189301784845295 0 CVV{I|L}[VP]SC 1.9978 - 212 + NaN NaN 190435.5 NaN 13444 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17048 72.61 NaN 1010700 35 0 183070 0.261 + 29906 VFDPKVFTF 9 69 550.2948858009202 1098.5752186686402 2 550.796630859375 MULTI HCD FTMS 0 0 0 17041 112044.0078125 0.06045711520637119 -4 0.1212615966796875 7 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 93.93812099017352 0.0044227730261779084 2 [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 77.445 0 0 7.0496 7.0496 91.909 0 0 0 7.147642715192504 56.47608139917317 7.147642715192504 12.32902204431447 0 2.7614393726401687 0 0.4247425010840047 0 + + [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][KT][DP]{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.0496;5.9273;5.8252;4.7029;2.3321;2.1718 +;-;-;-;-;- + 151 NaN NaN 245627.6 NaN 13445 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17049 72.613 NaN 273440 35 0 20559 0.261 -1 YIGSMRPLKM 10 68 606.3179330386188 NaN 0 606.337158203125 PEAK HCD FTMS 0 0 0 17041 19212.705078125 0.7083148338270295 -1 0.032806396484375 8 Oxidation (M) _YIGSMRPLKM(Oxidation (M))_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 13.90604991867851 0.3282826376286837 2 Q{I|L}VAETK 7 -1 24.39 0 0 2.0147 0 0 165.04505145402078 273.12461267642817 438.16966413044895 0 0 0 0 0 0 0 0.4247425010840047 0 Q{I|L}VAETK 2.0147 - 295 + NaN NaN 130871.2 NaN 13446 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17050 72.617 NaN 153640 35 0 23187 0.261 + 17590 LYVWNNYFV 9 56 609.3028799882109 1216.5912070432216 2 609.3043212890625 MULTI HCD FTMS 0 0 0 17041 48647.28515625 0.24952172200754377 -14 0.3897552490234375 9 Unmodified _LYVWNNYFV_ ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1 8.593279151180031 0.2858735984551981 2 T{M(Oxidation (M))|F} 2 8 24.464 0 0 2.0109 0 0 950.4669595730244 0 950.4669595730244 0 18.979400086720375 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.0109 - 14 NaN NaN 117702.1 NaN 13447 3601 17041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17052 72.622 NaN 4306900 35 0 872630 0.327 -1 LYMPKLLYF 9 99 602.3278316335578 1202.6411103339155 2 602.3139038085938 MULTI HCD FTMS 0 0 0 17051 91991.21875 0.09478575762140255 9 -0.265350341796875 1 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 28.486842064014134 0.11819662193267319 2 TVVC{I|L}PPT[Y{M(Oxidation (M))|F}] 10 -1 53.23 0 0 4.4261 0 0 64.04502641561528 0 64.04502641561528 0 12.053046282426365 0 0 0 0.5 0 1.9291746928241125 0 TVVC{I|L}PPT[Y{M(Oxidation (M))|F}] 4.4261 - 1588 + NaN NaN 742561.2 NaN 13448 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17053 72.626 NaN 1231800 35 0 239950 0.261 + 25878 SMTRYFYLF 9 87 622.2946879862326 1242.574823039265 2 622.2947998046875 MULTI HCD FTMS 0 0 0 17051 695736.125 0.2945371737033491 8 -0.2392120361328125 2 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 51.629811660486645 0.02929079705179888 2 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 4 55.261 0 0 4.4473 0 0 491.215250082637 0 491.215250082637 0 37.27600469921961 0 0 0 1.7302046884880937 0 0 0 + Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.4473 + + 1087 NaN NaN 281743.2 NaN 13449 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17054 72.63 NaN 974780 35 0 284170 0.262 + 5776 FPANVMDVI 9 56 511.25480385671625 1020.4950547802325 2 511.2549133300781 MULTI HCD FTMS 0 0 0 17051 711095 1 0 0 3 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 47.748688679222035 0.03472022231463587 2 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 5 + 68.703 0 0 6.7323 6.7323 94.806 0 0 0 24.26477176880759 44.26599703664159 24.26477176880759 68.70297202896872 0 0.9247425010840047 2 0.3252574989159953 0.3807196863200844 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 6.7323 - 163 NaN NaN 235542.5 NaN 13450 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17055 72.633 NaN 1585100 35 0 274030 0.261 + 30871 VQPRNWLLF 9 95 586.8323109501486 1171.650068967097 2 586.8323974609375 MULTI HCD FTMS 0 0 0 17051 786422.625 0.23509935531895493 -3 0.09845733642578125 4 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 64.23631603340823 0.01165516075559909 2 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 64.843 0 0 5.5343 5.5343 85.353 0 0 0 5.479917914819055 16.478174818886373 5.479917914819055 5.479917914819055 0 1.8494850021680094 0 0 1.0484550065040281 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]H[RP]N{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]QV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]GG{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]H[RP]QV{I|L}{M(Oxidation (M))|F};[Y{I|L}]H[RP]{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]H[RP]GG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]Q{I|L}V{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP][AG]V{I|L}{M(Oxidation (M))|F} 5.5343;5.0666;4.9187;4.8507;4.7484;4.451;4.3829;4.2807;4.1756;4.1328 -;-;-;-;-;-;-;-;-;- 775 NaN NaN 328382.1 NaN 13451 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17056 72.636 NaN 820820 35 0 128990 0.261 + 6085 FPEELTQTF 9 94 556.2690312419072 1110.5235095506143 2 556.2691650390625 MULTI HCD FTMS 0 0 0 17051 162795.375 0.21938490131147015 11 -0.31764984130859375 5 Unmodified _FPEELTQTF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 72.96794272382148 0.008127836904478181 2 P{I|L}[{I|L}A]TQT{M(Oxidation (M))|F} 8 3 56.24 0 0 5.0643 0 0 221.01802539378667 0 221.01802539378667 0 34.55767843264759 0 0 0 1.7302046884880937 0 1.1593793813122064 0 P{I|L}[{I|L}A]TQT{M(Oxidation (M))|F} 5.0643 - 1529 + NaN NaN 221462.5 NaN 13452 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17057 72.64 NaN 313740 35 0 13195 0.261 + 25893 SNIFSKHVDF 10 67 597.3015583568292 NaN 0 597.3194580078125 PEAK HCD FTMS 0 0 0 17051 24341.138671875 1 0 0 6 Unmodified _SNIFSKHVDF_ REV__ENSG00000135541|ENST00000265602|AHI1;REV__ENST00000531788.5_1_6:135639727-135754270:-|nuORF;REV__nc|ENSG00000135541|Q8N157-2|AHI1 5.296884461304476 0.3356508900602619 2 D{M(Oxidation (M))|F}N 3 -1 11.682 0 0 0.97959 0 0 166.14211483333435 647.2868190344259 813.4289338677602 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}N 0.97959 - 87 + NaN NaN 135173.1 NaN 13453 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17058 72.643 NaN 521160 35 0 75572 0.261 + 22654 QWKRMQYVP 9 90 618.3213275062147 1234.6281020792294 2 618.3213500976562 MULTI HCD FTMS 0 0 0 17051 126507.0078125 0.01760903044237837 30 -0.79461669921875 7 Unmodified _QWKRMQYVP_ REV__ENST00000531863.5_1_11:66276783-66276999:+|nuORF 7.910154910731844 0.2910521888787154 2 YYPE 4 -1 32.92 0 0 2.6664 0 0 0 679.3828219049436 679.3828219049436 7.001962355242952 0 0 0 0 0.4247425010840047 2 0 0 YYPE 2.6664 - 425 + NaN NaN 185351.1 NaN 13454 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17059 72.646 NaN 340390 35 0 37996 0.261 + 18416 MPSVPDFETL 10 69 576.2683117017085 1150.522070470217 2 576.2686157226562 MULTI HCD FTMS 0 0 0 17051 165721.34375 0.9804449316292261 -3 0.09845733642578125 8 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 65.23502041540118 0.023231415588018726 2 {[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[DP]{M(Oxidation (M))|F}ET{I|L} 10 3 + 68.802 0 0 5.9801 5.9801 90.517 0 0 0 14.13664226604736 16.53212513775344 14.13664226604736 14.13664226604736 0 1.4247425010840047 1.5228787452803376 1.0752574989159953 0.28872548999643577 {[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[DP]{M(Oxidation (M))|F}ET{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]{M(Oxidation (M))|F}ET{I|L};{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[DP]E{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}ET{I|L};{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}[DP]{M(Oxidation (M))|F}VP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS][DP]E{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}E{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]P{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA]{[ET]|[MV]}{M(Oxidation (M))|F}VP{M(Oxidation (M))|F} 5.9801;4.7514;4.7207;3.9897;3.6698;3.492;2.7303;2.4687;1.9304 -;+;-;-;-;-;-;-;- + 254 NaN NaN 148394.6 NaN 13455 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17060 72.649 NaN 730940 35 0 85486 0.261 + 17079 LYLAHVFYV 9 73 562.8100679088534 1123.6055828845067 2 562.810302734375 MULTI HCD FTMS 0 0 0 17051 334784.875 0.37218782020642877 -3 0.09845733642578125 9 Unmodified _LYLAHVFYV_ ENSG00000152661|ENST00000282561|GJA1 109.15424536547461 0.003080475237576971 2 [Y{I|L}]{I|L}AHV{M(Oxidation (M))|F}YV 9 0 + 85.64 0 0 7.6219 7.6219 87.452 0 0 0 21.751736484954378 63.21719669609443 21.751736484954378 1.5051499783199063 0 2.579689690656103 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}AHV{M(Oxidation (M))|F}YV;[Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}YV;[Y{I|L}]{I|L}AHV{M(Oxidation (M))|F}VY;[Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}VY;[Y{I|L}]{I|L}AHVY{M(Oxidation (M))|F}V;[Y{I|L}]{I|L}HAVY{M(Oxidation (M))|F}V;[Y{I|L}]{I|L}AHY{M(Oxidation (M))|F}VV;[Y{I|L}]{I|L}AHVYV{M(Oxidation (M))|F};[Y{I|L}]{I|L}HAY{M(Oxidation (M))|F}VV;[Y{I|L}]{I|L}AHYV{M(Oxidation (M))|F}V 7.6219;7.4879;7.0861;6.9521;6.4843;6.3504;5.8776;5.7918;5.7436;5.7209 +;-;-;-;-;-;-;-;-;- + 728 NaN NaN 203413 NaN 13456 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17061 72.653 NaN 247890 35 0 34487 0.261 -1 TPEIMAPIL 9 62 500.77392838520416 999.5333038372083 2 500.7730407714844 MULTI HCD FTMS 0 0 0 17051 87371.390625 0.7377239971067676 3 -0.0851898193359375 10 Oxidation (M) _TPEIM(Oxidation (M))APIL_ ENSG00000130706|ENST00000253003|ADRM1 16.942295170755138 0.21397866736869717 2 A[{I|L}P]{I|L} 4 -1 22.307 0 0 2.2318 0 0 587.2632313459 0 587.2632313459 0 4.638699090856946 0 0 0 0.8494850021680094 0 0 0 A[{I|L}P]{I|L} 2.2318 + + 100 NaN NaN 122268.6 NaN 13457 3602 17051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17063 72.658 NaN 905700 35 0 100680 0.327 + 31845 VYMIRVYLL 9 84 593.3388200549566 1184.6630871767131 2 593.3388671875 MULTI HCD FTMS 0 0 0 17062 274635.84375 0.5432466408649124 -2 0.068939208984375 1 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 81.61307344734483 0.005330412723537057 2 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 88.65 0 0 7.4832 7.4832 89.427 0 0 0 6.882484182756485 6.882484182756485 6.882484182756485 6.882484182756485 0 2.579689690656103 1.5228787452803376 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};VY{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}VY{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}Y{I|L}V;[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}R{I|L}YV{I|L} 7.4832;6.9022;6.6584;6.6164;6.3203;6.1716;5.9175;5.7916;5.7868;5.4535 +;+;-;-;-;-;-;-;-;- + 1835 NaN NaN 229924.3 NaN 13458 3603 17062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17064 72.662 NaN 343550 35 0 37399 0.264 -1 PDGSSKGC 8 52 404.1696931571729 806.3248333811458 2 404.16998291015625 MULTI HCD FTMS 0 0 0 17062 213917.53125 0.025546604311707997 26 -0.7037353515625 2 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 8.8515 0 0 1.0978 0 0 504.1874260098552 152.07171045474846 656.2591364646037 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.0978 - 7 + NaN NaN 144541.8 NaN 13459 3603 17062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17065 72.666 NaN 838800 35 0 197970 0.261 + -1 FPIKHRRC 8 74 557.3078005023972 NaN 0 557.290283203125 PEAK HCD FTMS 0 0 0 17062 13671.916015625 0.29034781406911786 3 -0.0785369873046875 3 Carbamidomethyl (C) _FPIKHRRC(Carbamidomethyl (C))_ REV__ENSG00000105499|ENST00000599921|PLA2G4C;REV__ENST00000596510.5_1_19:48556252-48575644:-|nuORF;REV__nc|ENSG00000105499|Q9UP65-2|PLA2G4C;REV__nc|ENSG00000105499|Q9UP65-3|PLA2G4C 10.183394434864962 0.38822285293237185 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}AAWP 7 -1 20.265 0 0 1.8214 0 0 131.13116680461457 162.05593286685783 293.1870996714724 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}AAWP 1.8214 - 326 + NaN NaN 217618.6 NaN 13460 3603 17062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17066 72.669 NaN 823170 35 0 57578 0.261 + -1 KSACCVFVKM 10 90 566.2691162995571 NaN 0 566.286865234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _KSACCVFVKM(Oxidation (M))_ REV__nc|ENSG00000143590|P52797-2|EFNA3 18.1463463914782 0.29565035219289926 2 QV[QA]{M(Oxidation (M))|F}VQ 7 -1 24.441 0 0 2.162 0 0 165.04080217354698 162.0559023492797 327.0967045228267 0 0 0 0 0 0 0 0 0.6694451763165201 QV[QA]{M(Oxidation (M))|F}VQ 2.162 - 238 + NaN NaN 207642.8 NaN 13461 3603 17062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17067 72.672 NaN 320580 35 0 48957 0.261 -1 YGMWGGAML 9 65 501.2146884120783 1000.4148238909567 2 501.2148132324219 MULTI HCD FTMS 0 0 0 17062 122500.8671875 0.5266113858486551 -2 0.068939208984375 5 Oxidation (M) _YGM(Oxidation (M))WGGAML_ nc|ENSG00000291317|P0DTL5|TMEM276 9.347437153973935 0.2795965555214564 2 {M(Oxidation (M))|F}A{I|L} 3 -1 28.188 0 0 2.8176 0 0 651.2100697248062 0 651.2100697248062 0 8.177418734074564 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}A{I|L} 2.8176 - 148 NaN NaN 133860.5 NaN 13462 3603 17062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17069 72.677 NaN 2685900 35 0 742280 0.326 + 27277 SYPTFFPRF 9 97 581.2906142903571 1160.566675647514 2 581.2904663085938 MULTI HCD FTMS 0 0 0 17068 812484.875 0.4916204383581205 5 -0.15411376953125 1 Unmodified _SYPTFFPRF_ ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF 59.368380827593164 0.01846506874148156 2 {[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}PR{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 48.395 3.7236 1.4889 4.17 4.17 61.15 0 0 0 0 14.713403050078782 0 0 0 2.3213337517843655 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}PR{M(Oxidation (M))|F} 4.17 + + 1297 + NaN NaN 499062.8 NaN 13463 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17070 72.682 NaN 856030 35 0 302940 0.264 -1 0 60 413.19354773523565 824.3725425372713 2 413.19342041015625 MULTI HCD FTMS 0 0 0 17068 281300.71875 0.242747840500061 -6 0.1769561767578125 2 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 8.0989 0 0 0.98244 0 0 238.04998501949632 423.27200435873874 661.321989378235 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 0.98244 - 11 + NaN NaN 214728.4 NaN 13464 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17071 72.685 NaN 626840 35 0 143700 0.261 + 21629 PYPQYFTQL 9 77 578.7876836332324 1155.5608143332647 2 578.787841796875 MULTI HCD FTMS 0 0 0 17068 154273.078125 0.2232165715138864 -3 0.0884857177734375 3 Unmodified _PYPQYFTQL_ ENSG00000103160|ENST00000219439|HSDL1 63.960520009940105 0.0120409805053046 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L} 9 0 + 58.016 0 0 5.0206 5.0206 86.982 0 0 0 10.748031033778744 41.81803731054423 10.748031033778744 9.208187539523749 0 1.5669015600442577 1.3979400086720375 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}T[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y[QT]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y[QT]{I|L}{M(Oxidation (M))|F};[Y{I|L}]WW{[ET]|[MV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[QT][WP][WP][WR] 5.0206;4.2237;2.4095;2.3014;0.93885;0.43186 +;-;-;-;-;- + 242 NaN NaN 183614.6 NaN 13465 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17072 72.689 NaN 456590 35 0 31803 0.261 + 34482 YPFIIDAHL 9 75 544.7926696694888 1087.5707864057774 2 544.7928466796875 MULTI HCD FTMS 0 0 0 17068 71430.7734375 0.07587538766978551 -4 0.1212921142578125 4 Unmodified _YPFIIDAHL_ ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10 104.79918948944588 0.003791450360204016 2 YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L} 9 0 + 101.17 0 0 9.3023 9.3023 95.438 0 0 0 76.73184401141008 6.751736484954378 6.751736484954378 13.05462187404089 0 3.079689690656103 1.6989700043360187 0.6549471895720984 0 + + YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L}DAH{I|L};YP{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y{I|L}DAH{I|L};[Y{M(Oxidation (M))|F}]P{I|L}{I|L}DAH{I|L};YP{[HG]|PP}{I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 9.3023;8.1019;7.0411;6.4459;6.2313;6.0072;5.1605;4.4369 +;+;-;-;-;-;-;- + 602 + NaN NaN 161987.7 NaN 13466 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17073 72.692 NaN 392910 35 0 41852 0.261 + 6971 FPVRLSVYL 9 81 547.323192455156 1092.631831977112 2 547.3231811523438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FPVRLSVYL_ ENSG00000166012|ENST00000448108|TAF1D 55.50274090549119 0.023872834264864425 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VR{I|L}SVY{I|L} 9 0 + 55.952 0 0 5.1208 5.1208 91.859 0 0 0 12.464169411070927 31.252794248470224 12.464169411070927 55.951841566953036 0 1.1989700043360187 1.154901959985743 0.6549471895720984 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VR{I|L}SVY{I|L} 5.1208 + + 237 NaN NaN 159036.3 NaN 13467 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17074 72.695 NaN 276280 35 0 18883 0.261 + -1 LMVDHYLLR 9 77 588.3150304817015 1174.6155080302028 2 589.3052978515625 MULTI HCD FTMS 0 0 0 17068 24888.6171875 0.16818829697248258 8 -0.235870361328125 6 Oxidation (M) _LM(Oxidation (M))VDHYLLR_ REV__ENSG00000083814|ENST00000317398|ZNF671;REV__ENST00000594803.1_1_19:58233776-58238980:-|nuORF 7.910154910731844 0.2910521888787154 2 YYP 3 -1 22.051 0 0 1.8773 0 0 0 748.4134565988153 748.4134565988153 10.344406447039063 0 0 0 0 0 1.3979400086720375 0 0 YYP 1.8773 - 138 NaN NaN 132626.7 NaN 13468 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17075 72.699 NaN 173520 35 0 40721 0.261 -1 FPHCFHAL 8 39 514.7416128901307 1027.4686728470613 2 514.7418212890625 MULTI HCD FTMS 0 0 0 17068 56789.796875 0.535991642502253 -1 0.0195465087890625 7 Carbamidomethyl (C) _FPHC(Carbamidomethyl (C))FHAL_ ENST00000610164.1_1_7:112724279-112724519:-|nuORF 2.8892196856762586 0.5377058178582064 2 V 1 -1 6.9897 0 0 0.68028 0 0 532.1630840463055 393.21311365299067 925.3761976992962 0 0 0 0 0 0 0 0 0 V 0.68028 - 3 + NaN NaN 125099.2 NaN 13469 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17076 72.702 NaN 61037 35 0 5183.3 0.261 + -1 LLCPCWAL 8 39 488.242894715647 974.4712364980941 2 488.24273681640625 MULTI HCD FTMS 0 0 0 17068 20723.1875 0.4870211055123225 -1 0.0195465087890625 8 Carbamidomethyl (C) _LLC(Carbamidomethyl (C))PCWAL_ REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF 6.354104778181461 0.5325651638111438 2 A{I|L} 2 -1 20.969 0 0 2.1518 0 0 772.341112205275 0 772.341112205275 0 20.969100130080562 0 0 0 0 0 0 0 A{I|L} 2.1518 + + 2 NaN NaN 109405.2 NaN 13470 3604 17068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17078 72.707 NaN 1244800 35 0 90183 0.327 + 11422 IYPTTYVQF 9 99 566.2884960530572 1130.5624391729143 2 566.2885131835938 MULTI HCD FTMS 0 0 0 17077 594882.6875 1 0 0 1 Unmodified _IYPTTYVQF_ ENSG00000179820|ENST00000391770|MYADM 81.89019881105858 0.005240739447516426 2 [Y{I|L}]N[KG]YVQ{I|L} 9 4 51.053 0 0 4.5157 0 0 0 48.988333846532356 48.988333846532356 26.83270606067498 0 0 0 0 1.9247425010840047 1.2218487496163564 0 0 [Y{I|L}]N[KG]YVQ{I|L} 4.5157 - 1736 NaN NaN 278355 NaN 13471 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17079 72.711 NaN 704980 35 0 50427 0.261 + 19832 NYAWVYYHL 9 80 614.7931119449629 1227.5716709567257 2 614.7926635742188 MULTI HCD FTMS 0 0 0 17077 345526.53125 0.005439220243673468 135 -3.2868423461914062 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 2 [YN]AWVYYH{I|L} 9 0 + 99.157 0 0 8.0775 8.0775 95.706 0 0 0 32.17945412406904 16.478174818886373 16.478174818886373 27.919766801346228 0 2.443672679568534 1.6989700043360187 0 1.5669015600442577 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN][WY]{[VA]|[{I|L}G]}YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}C[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}H{[VA]|[{I|L}G]}YH{I|L};[WY]{[QG]|[NA]}VYYH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[HK]{[CP]|[EA]}YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V{NN|[MP]|[D{I|L}]|[EV]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QV]|[N{I|L}]|[RA]|[KV]}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]V[VS]E{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}H[RP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.0775;5.8031;3.6558;2.271;2.022;1.7498;1.5543;1.5004;1.3814;1.2506 +;-;-;-;-;-;-;-;-;- + 657 NaN NaN 199723.4 NaN 13472 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17080 72.715 NaN 499990 35 0 41931 0.261 + 29298 TYMETYVYF 9 79 616.7632431765091 1231.5119334198182 2 616.7628784179688 MULTI HCD FTMS 0 0 0 17077 224057.375 0.8903934716397294 -6 0.18364715576171875 3 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ ENSG00000013563|ENST00000369807|DNASE1L1 67.34385681178166 0.00994769994983633 2 TYVY{M(Oxidation (M))|F} 5 4 63.558 0 0 5.161 0 0 540.1903553693375 0 540.1903553693375 0 52.75576261223691 0 0 0 1.6549471895720984 0 1.555462187404089 0 + TYVY{M(Oxidation (M))|F} 5.161 + + 177 NaN NaN 185817.3 NaN 13473 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17081 72.718 NaN 574320 35 0 121400 0.262 + 26276 SRDFGLLVF 9 72 527.2901693185413 1052.5657857038825 2 528.2740478515625 MULTI HCD FTMS 0 0 0 17077 36372.08984375 1 0 0 4 Unmodified _SRDFGLLVF_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 7.910154910731844 0.2910521888787154 2 A{I|L}MET{I|L}V{M(Oxidation (M))|F} 8 6 35.559 0 0 3.3783 0 0 130.0917460952531 0 130.0917460952531 0 15.66306300247859 0 0 0 0 0 0 0 A{I|L}MET{I|L}V{M(Oxidation (M))|F} 3.3783 - 321 + NaN NaN 174846.3 NaN 13474 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17082 72.721 NaN 705280 35 0 60817 0.261 + 13037 KYIYQTLFL 9 96 594.8378767453419 1187.6612005574837 2 594.8392333984375 MULTI HCD FTMS 0 0 0 17077 295928.90625 1 0 0 5 Unmodified _KYIYQTLFL_ ENSG00000087338|ENST00000282570|GMCL1;ENSG00000244234|ENST00000463439|GMCL2;ENST00000468386.2_1_2:70057024-70067283:+|nuORF 53.40400417844725 0.026808823219830042 2 [YK]{I|L}YQT{I|L}{M(Oxidation (M))|F}{I|L} 9 0 + 66.538 0 0 5.6024 5.6024 84.128 0 0 0 2.3764301679958777 50.964556174699354 2.3764301679958777 1.9588657056758763 0 2.1747425010840047 0 0.75 0 + + [YK]{I|L}YQT{I|L}{M(Oxidation (M))|F}{I|L};[YK]{I|L}YQT{I|L}{I|L}{M(Oxidation (M))|F};[YK]{I|L}Y[AG]T{I|L}{M(Oxidation (M))|F}{I|L};[YK]{I|L}Y[AG]T{I|L}{I|L}{M(Oxidation (M))|F};[YV][KG][{M(Oxidation (M))|F}T]T{I|L}{M(Oxidation (M))|F}{I|L};[YV][KG][{M(Oxidation (M))|F}T]T{I|L}{I|L}{M(Oxidation (M))|F};[YK][VG][{M(Oxidation (M))|F}T]T{I|L}{M(Oxidation (M))|F}{I|L};[YK][VG][{M(Oxidation (M))|F}T]T{I|L}{I|L}{M(Oxidation (M))|F};[YK]{I|L}Y{[{M(Oxidation (M))|F}D]|MM}VK{I|L} 5.6024;5.4375;4.8271;4.6622;3.7216;3.5567;2.618;2.453;2.0071 +;-;-;-;-;-;-;-;- + 1081 NaN NaN 194785.7 NaN 13475 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17083 72.725 NaN 774390 35 0 71954 0.261 + 11800 KEIMQHRFF 9 93 618.3213275062147 1234.6281020792294 2 618.3230590820312 MULTI HCD FTMS 0 0 0 17077 132859.734375 0.0184932925663942 33 -0.883056640625 6 Unmodified _KEIMQHRFF_ ENSG00000142208|ENST00000649815|AKT1;ENST00000557552.1_1_14:105238371-105239528:-|nuORF;nc|ENSG00000142208|P31749-2|AKT1 18.1463463914782 0.20357593197100715 2 [YT]{I|L}Q[HS]QV{I|L}N 10 8 45.143 0 0 3.6564 0 0 0 48.0112050030331 48.0112050030331 18.666600949336072 0 0 0 0 0.5 2 0.3494850021680094 0.3494850021680094 [YT]{I|L}Q[HS]QV{I|L}N 3.6564 - 869 NaN NaN 219229.8 NaN 13476 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17084 72.728 NaN 365630 35 0 20859 0.261 + 35813 YYPPSQYLL 9 88 572.2895162216277 1142.5644795100552 2 572.289306640625 MULTI HCD FTMS 0 0 0 17077 127518.4765625 1 0 0 7 Unmodified _YYPPSQYLL_ ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-2|LRSAM1 32.78568957990786 0.09846250359632436 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YS[QP]Y{I|L}{I|L} 9 3 + 49.152 0 0 4.3019 4.3019 82.363 0 0 0 2.2847001269133926 14.09256854528806 2.2847001269133926 2.2847001269133926 0 1.1861818737241734 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YS[QP]Y{I|L}{I|L};YYPS[QP]Y{I|L}{I|L};YY{M(Oxidation (M))|F}{[NV]|[RG]}[DP]{I|L}{I|L} 4.3019;4.102;0.68212 -;-;- 256 NaN NaN 154908.2 NaN 13477 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17085 72.731 NaN 333300 35 0 57798 0.261 + -1 NYPVPHCLLF 10 72 630.3151043893896 1258.615655845579 2 630.3140869140625 MULTI HCD FTMS 0 0 0 17077 135075.25 1 0 0 8 Carbamidomethyl (C) _NYPVPHC(Carbamidomethyl (C))LLF_ REV__ENSG00000101353|ENST00000343811|MROH8;REV__nc|ENSG00000101353|Q9H579-2|MROH8;REV__nc|ENSG00000101353|Q9H579|MROH8 26.88365393820708 0.25965138844209146 2 [YN]{I|L} 3 -1 44.749 0 0 3.5554 0 0 0 865.4026679457266 865.4026679457266 20.530965402154564 0 0 0 0 1 1.6989700043360187 0 0.7302046884880937 [YN]{I|L} 3.5554 - 284 NaN NaN 160406.8 NaN 13478 3605 17077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17087 72.736 NaN 527150 35 0 87569 0.327 + 23444 RLPLRLFLI 9 82 570.8846629459014 1139.7547729586026 2 570.8844604492188 MULTI HCD FTMS 0 0 0 17086 203371.359375 0.43421985248937933 4 -0.1245574951171875 1 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 34.10243960390752 0.09241788333544565 2 {I|L}R{I|L} 3 6 30.247 0 0 2.6538 0 0 0 754.4601494815577 754.4601494815577 9.100971678920047 0 0 0 0 0.3252574989159953 0 0 0.3807196863200844 + {I|L}R{I|L} 2.6538 + + 74 + NaN NaN 190423 NaN 13479 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17088 72.741 NaN 723300 35 0 122800 0.261 -1 VMARTNTVF 9 77 540.779230696639 NaN 0 540.7794799804688 PEAK HCD FTMS 0 0 0 17086 268627.15625 0.8778771923392451 -1 0.0294647216796875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VMARTNTVF_ ENST00000475815.5_1_2:36779888-36779918:-|nuORF 25.399314129420986 0.1511568710901456 2 VT{M(Oxidation (M))|F} 3 -1 29.227 0 0 2.7073 0 0 165.0802622874051 564.2566012018186 729.3368634892238 0 0 0 0 0 1.1307196863200843 0 0.7742275032520141 0 VT{M(Oxidation (M))|F} 2.7073 - 49 + NaN NaN 198822.6 NaN 13480 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17089 72.744 NaN 932210 35 0 240520 0.261 + 23320 RISLPLPNF 9 77 528.8138131907656 1055.613073448331 2 528.813720703125 MULTI HCD FTMS 0 0 0 17086 315346.84375 0.2500272299306244 -6 0.1802825927734375 3 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 33.4449034751529 0.0954363425218424 2 V{[CT]|[{M(Oxidation (M))|F}G]}P{I|L}PN{M(Oxidation (M))|F} 8 4 44.971 0 0 4.2602 0 0 166.16000358479715 0 166.16000358479715 0 37.29486901908295 0 0 0 1.6237125054200234 0 0.3807196863200844 0.7302046884880937 V{[CT]|[{M(Oxidation (M))|F}G]}P{I|L}PN{M(Oxidation (M))|F} 4.2602 - 255 + NaN NaN 234948.7 NaN 13481 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17090 72.748 NaN 222240 35 0 21954 0.261 + 6182 FPELDSPQL 9 58 523.2637268453352 1044.5129007574703 2 523.2638549804688 MULTI HCD FTMS 0 0 0 17086 123743.15625 0.7892638631101586 6 -0.1768798828125 4 Unmodified _FPELDSPQL_ ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF 41.8396318013385 0.056899836730939755 2 EPSPQ{I|L} 6 4 45.271 0 0 4.3342 0 0 375.17930800605626 0 375.17930800605626 0 29.786465885450966 0 0 0 1 0 0.3807196863200844 0.3494850021680094 EPSPQ{I|L} 4.3342 - 140 NaN NaN 135123.7 NaN 13482 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17091 72.751 NaN 217150 35 0 21500 0.261 -1 VPMEDINL 8 53 473.73125633104536 945.4479597288907 2 473.73126220703125 MULTI HCD FTMS 0 0 0 17086 103291.796875 0.13515351053304664 34 -0.9026718139648438 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 16.942295170755138 0.46913822049235215 2 {I|L}N{I|L} 3 -1 30.005 0 0 3.1736 0 0 587.2254626249822 0 587.2254626249822 0 9.035984316004217 0 0 0 0.3807196863200844 0 0 0 {I|L}N{I|L} 3.1736 + + 36 NaN NaN 148317.1 NaN 13483 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17092 72.754 NaN 242900 35 0 44241 0.261 + -1 FRSSILSCTF 10 51 609.3028799882109 1216.5912070432216 2 609.302734375 MULTI HCD FTMS 0 0 0 17086 61785.06640625 0.3169080476849029 -9 0.26873779296875 6 Carbamidomethyl (C) _FRSSILSC(Carbamidomethyl (C))TF_ REV__ENST00000483911.1_1_2:219748908-219754805:+|nuORF 12.240655878213236 0.39661705172222156 2 T{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.4475 0 0 950.4651576669133 0 950.4651576669133 0 22.341284356197235 0 0 0 0.5 0 0.3807196863200844 0 T{M(Oxidation (M))|F} 2.4475 + + 30 NaN NaN 125613.2 NaN 13484 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17093 72.757 NaN 289340 35 0 10662 0.261 + 26517 SVKLDWFLW 9 74 597.3205763911199 1192.6265998490396 2 597.82275390625 MULTI HCD FTMS 0 0 0 17086 95185.4140625 0.3782419732494113 10 -0.29145050048828125 7 Unmodified _SVKLDWFLW_ REV__ENST00000322716.7_1_3:37028664-37028739:-|nuORF 7.910154910731844 0.2910521888787154 2 W 1 -1 15.485 0 0 1.2984 0 0 988.5372576632959 0 988.5372576632959 0 2.1196747691918443 0 0 0 0 0 0 0 W 1.2984 + + 232 + NaN NaN 149049.9 NaN 13485 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17094 72.761 NaN 597470 35 0 48998 0.262 + 4494 EYIRPFAI 8 82 504.7795156459604 1007.5444783587208 2 504.7798767089844 MULTI HCD FTMS 0 0 0 17086 52919.67578125 0.36349551144344733 -3 0.0785369873046875 8 Unmodified _EYIRPFAI_ REV__tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1 20.453626601364224 0.4433031943603284 2 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{I|L} 5 -1 25.317 0 0 2.5128 0 0 446.2514424976661 0 446.2514424976661 0 0.28028723600243666 0 0 0 0.5 0 0.2614393726401688 0 D{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{I|L} 2.5128 - 243 NaN NaN 183110.2 NaN 13486 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17095 72.764 NaN 96082 35 0 10367 0.261 + 29663 VARLGNGR 8 43 421.751389862351 841.488226791502 2 421.7512512207031 MULTI HCD FTMS 0 0 0 17086 38556.921875 0.3799303986289734 -20 0.5667724609375 9 Unmodified _VARLGNGR_ REV__ENSG00000185420|ENST00000490107|SMYD3;REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF 0.6903765706972694 0.5409681170271811 2 H{M(Oxidation (M))|F} 2 -1 14.693 0 0 1.746 0 0 539.3505752795865 0 539.3505752795865 0 13.098943791441966 0 0 0 0 0 0 0 H{M(Oxidation (M))|F} 1.746 - 12 + NaN NaN 122796.2 NaN 13487 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17096 72.767 NaN 242580 35 0 36184 0.261 + 34756 YPYQYPGPPP 10 69 589.7782302828393 1177.5419076324786 2 589.778564453125 MULTI HCD FTMS 0 0 0 17086 31464.31640625 0.5750322180495894 -2 0.058990478515625 10 Unmodified _YPYQYPGPPP_ ENSG00000107404|ENST00000378888|DVL1;nc|ENSG00000107404|O14640-2|DVL1 11.640296217721598 0.4022326134240651 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y 3 7 30.062 0 0 2.5529 0 0 0 751.3400698241379 751.3400698241379 27.587418566968154 0 0 0 0 0.5 2 0 0 + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y 2.5529 + + 75 NaN NaN 137513.1 NaN 13488 3606 17086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17098 72.772 NaN 9431600 35 0 1939200 0.327 + 24256 RYFLPPYTF 9 96 602.3135033827217 1202.6124538322433 2 602.3139038085938 MULTI HCD FTMS 0 0 0 17097 5751924.5 0.656993156878707 -9 0.27205657958984375 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 103.35351024395868 0.004027461563756449 2 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 81.336 0 0 6.7633 6.7633 90.966 0 0 0 5.607346925073955 5.607346925073955 5.607346925073955 10.898476916622528 0 2.548455006504028 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]R{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}PPTY{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]R{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F}{I|L}RY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}P{I|L}RY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F}{I|L}RY{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F}Y[R{I|L}]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}PY[R{I|L}]{M(Oxidation (M))|F} 6.7633;5.857;5.0811;4.8253;4.1749;3.122;3.0268;2.9653;2.824;2.7288 +;-;-;-;-;-;-;-;-;- + 2698 NaN NaN 1040549.2 NaN 13489 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17099 72.777 NaN 3974300 35 0 859870 0.261 + 29907 VFDPKVFTF 9 92 550.2948858009202 1098.5752186686402 2 550.2949829101562 MULTI HCD FTMS 0 0 0 17097 2318103.5 0.7520176116088427 2 -0.05901336669921875 2 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 132.37960578797484 0.0004606598083464779 2 V{M(Oxidation (M))|F}DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 120.56 0 0 10.974 10.974 93.006 0 0 0 67.20143303225781 16.478174818886373 16.478174818886373 7.525749891599531 0 3.1989700043360187 0 2.474907363720609 0 + + V{M(Oxidation (M))|F}DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}VDPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKVT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPK{M(Oxidation (M))|F}TV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPK{M(Oxidation (M))|F}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]DPKTV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKT{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10.974;10.289;7.5047;7.2369;6.7959;6.6447;6.6153;6.6153;6.4986;6.3474 +;-;+;-;-;-;-;-;-;- + 1543 + NaN NaN 695713.1 NaN 13490 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17100 72.78 NaN 2068600 35 0 440270 0.261 + 27237 SYNPLWLRI 9 105 581.3242008687558 1160.6338488043116 2 581.3245849609375 MULTI HCD FTMS 0 0 0 17097 423783.09375 0.08201975883138664 11 -0.31427001953125 3 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 89.40071534611396 0.0045416704840156395 2 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}{I|L}R 9 2 + 47.776 0 0 4.1164 4.1164 85.729 0 0 0 17.59418057675049 11.962724883926654 11.962724883926654 9.208187539523749 0 1.5994850021680094 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}W{I|L}{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}W{I|L}{I|L}R;[YN]SP{I|L}W{I|L}{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}NP{I|L}{I|L}W{I|L}R;{[{M(Oxidation (M))|F}C]|[YS]}GGP{I|L}{I|L}W{I|L}R;[YN]SP{I|L}{I|L}W{I|L}R 4.1164;3.323;3.08;2.8888;2.0954;1.8524 -;-;-;-;-;- 1639 + NaN NaN 419419.7 NaN 13491 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17101 72.784 NaN 930800 35 0 157580 0.261 + 25879 SMTRYFYLF 9 95 622.2946879862326 1242.574823039265 2 622.2945556640625 MULTI HCD FTMS 0 0 0 17097 297985.1875 0.12615086636720574 13 -0.3665771484375 4 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 49.55428908609986 0.03219431099695407 2 Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 5 4 52.633 0 0 4.2358 0 0 491.21553237129064 0 491.21553237129064 0 21.424909277149737 0 0 0 1.7059771852360797 0 0 0 + Y{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F} 4.2358 + + 1877 NaN NaN 246104.6 NaN 13492 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17102 72.787 NaN 1003700 35 0 139290 0.262 + 6160 FPEHIFPAL 9 87 535.7874179887401 1069.5602830442801 2 535.7872924804688 MULTI HCD FTMS 0 0 0 17097 315889.09375 0.01973311793465645 35 -0.9089889526367188 5 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 42.09456458481378 0.05572955244001856 2 {I|L}{M(Oxidation (M))|F}PA{I|L} 5 4 44.53 0 0 4.1634 0 0 510.22117812324376 0 510.22117812324376 0 20.361256811723045 0 0 0 1.3807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}PA{I|L} 4.1634 + + 810 NaN NaN 263629.7 NaN 13493 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17103 72.79 NaN 169850 35 0 8987.4 0.261 + 1748 CLEMNESYVAI 11 54 636.2863387784976 1270.558124623795 2 636.28662109375 MULTI HCD FTMS 0 0 0 17097 60900.76171875 0.41205302938600363 9 -0.255340576171875 6 Unmodified _CLEMNESYVAI_ REV__ENSG00000106772|ENST00000376718|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-2|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-3|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2;REV__PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant;REV__PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant 2.0860074813731053 0.4097721463192591 2 VA{I|L} 3 -1 26.198 0 0 2.0619 0 0 969.3565540998062 0 969.3565540998062 0 22.21848749616356 0 0 0 0 0 0 0 VA{I|L} 2.0619 + + 4 NaN NaN 144365.9 NaN 13494 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17104 72.794 NaN 127920 35 0 20379 0.264 + 29752 VDVDSLAEL 9 52 480.7478229475396 NaN 0 480.7479248046875 PEAK HCD FTMS 0 0 0 17097 45318.51171875 1 0 0 7 Unmodified _VDVDSLAEL_ ENSG00000136643|ENST00000366960|RPS6KC1;ENST00000468069.1_1_1:213302889-213349922:+|nuORF;nc|ENSG00000136643|Q96S38-2|RPS6KC1 10.823927491677226 0.2427956001690155 2 VD{I|L} 3 6 18.188 0 0 1.8956 0 0 117.0793887981725 512.2002657525999 629.2796545507724 0 0 0 0 0 0.5 0 0 0 VD{I|L} 1.8956 - 9 + NaN NaN 107624.8 NaN 13495 3607 17097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17106 72.799 NaN 4413500 35 0 764630 0.327 + 30872 VQPRNWLLF 9 107 586.8323109501486 1171.650068967097 2 586.8326416015625 MULTI HCD FTMS 0 0 0 17105 3237271.5 0.9677753646042753 3 -0.08838653564453125 1 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 81.61307344734483 0.005330412723537057 2 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 64.038 0 0 5.4656 5.4656 84.584 0 0 0 3.561062652429925 15.6283046646505 3.561062652429925 3.561062652429925 0 1.8494850021680094 0 0 1.2689301784845295 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F};[W{I|L}]N[RP]N{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]QV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[VG]PWN{I|L}{I|L}{M(Oxidation (M))|F};[W{I|L}]N[RP]{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]GG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{I|L}[RP]N{I|L}{M(Oxidation (M))|F};[W{I|L}]N[RP]QV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W{I|L}V[PG]N{I|L}{M(Oxidation (M))|F} 5.4656;5.1616;5.0493;4.8604;4.831;4.7454;4.6797;4.6421;4.5565;4.4288 -;-;-;-;-;-;-;-;-;- 4183 NaN NaN 574807.4 NaN 13496 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17107 72.803 NaN 959130 35 0 90530 0.261 + 17080 LYLAHVFYV 9 88 562.8100679088534 1123.6055828845067 2 562.8106689453125 MULTI HCD FTMS 0 0 0 17105 477715.25 0.5310867092692558 3 -0.08838653564453125 2 Unmodified _LYLAHVFYV_ ENSG00000152661|ENST00000282561|GJA1 109.15424536547461 0.003080475237576971 2 {I|L}Y{I|L}AHV{M(Oxidation (M))|F}YV 9 0 + 76.329 0 0 6.7932 6.7932 86.618 0 0 0 3.0423595621581256 3.0423595621581256 3.0423595621581256 3.0423595621581256 0 2.579689690656103 1.6989700043360187 0 0 + + {I|L}Y{I|L}AHV{M(Oxidation (M))|F}YV;[Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}YV;{I|L}Y{I|L}HAV{M(Oxidation (M))|F}YV;[Y{I|L}]{I|L}HAV{M(Oxidation (M))|F}VY;[Y{I|L}]{I|L}HAY{M(Oxidation (M))|F}VV;[Y{I|L}]{I|L}HH{[ET]|[MV]}{I|L}V;[Y{I|L}]{I|L}HH{[ET]|[MV]}V{I|L};[Y{I|L}]{I|L}HH{[ES]|[DT]|[{I|L}C]}{I|L}{I|L};{I|L}[H{I|L}]YAV{M(Oxidation (M))|F}YV;[Y{I|L}][RD]{[NV]|[RG]}{M(Oxidation (M))|F}VV 6.7932;6.5224;6.4152;5.7703;4.6278;4.5198;3.8978;3.6298;2.5175;2.4527 +;-;-;-;-;-;-;-;-;- + 970 + NaN NaN 231041.7 NaN 13497 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17108 72.807 NaN 1008400 35 0 258810 0.261 + 5777 FPANVMDVI 9 71 511.25480385671625 1020.4950547802325 2 511.25482177734375 MULTI HCD FTMS 0 0 0 17105 645443.5625 0.9076755742903551 6 -0.17685699462890625 3 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 47.748688679222035 0.03472022231463587 2 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 5 + 65.539 0 0 6.4223 6.4223 91.726 0 0 0 16.70432836127297 16.40978057358332 16.40978057358332 16.70432836127297 0 1.2302046884880937 1.6989700043360187 0.3054621874040891 0.3807196863200844 [DV][WK]{M(Oxidation (M))|F}DV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{[NV]|[RG]}{M(Oxidation (M))|F}DV{I|L} 6.4223;4.7854 -;- 240 NaN NaN 240156 NaN 13498 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17109 72.81 NaN 1100200 35 0 91950 0.261 + 31846 VYMIRVYLL 9 106 593.3388200549566 1184.6630871767131 2 593.3388061523438 MULTI HCD FTMS 0 0 0 17105 182579.5625 0.36115363772035064 3 -0.08838653564453125 4 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 81.61307344734483 0.005330412723537057 2 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 87.017 0 0 7.3453 7.3453 89.937 0 0 0 21.064921830680703 16.478174818886373 16.478174818886373 9.018637558036673 0 2.2614393726401687 1.5228787452803376 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}YV{I|L};[YV]{M(Oxidation (M))|F}{I|L}R{I|L}VY{I|L};[YV]{M(Oxidation (M))|F}V[R{I|L}]Y{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}{I|L}Y;[Y{I|L}]V{M(Oxidation (M))|F}RVY{I|L}{I|L};[YV]{I|L}{M(Oxidation (M))|F}R{I|L}YV{I|L} 7.3453;6.584;6.584;6.3132;6.1645;5.8799;5.8227;5.7399;5.5671;5.5519 +;-;-;-;-;-;-;-;-;- + 2835 NaN NaN 264873.5 NaN 13499 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17110 72.813 NaN 853710 35 0 48025 0.261 -1 TYIYIQKCF 9 103 618.3107847224283 1234.6070165116564 2 618.3109741210938 MULTI HCD FTMS 0 0 0 17105 190367.6875 0.6494766245535476 -1 0.0261993408203125 5 Carbamidomethyl (C) _TYIYIQKC(Carbamidomethyl (C))F_ ENST00000383746.7_2_3:44396236-44396287:+|nuORF 39.957323273324995 0.06554068735427583 2 [YT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[KG]KT{M(Oxidation (M))|F} 10 -1 + 67.646 0 0 5.4792 5.4792 89.017 0 0 0 13.706334813935925 28.595507971723222 13.706334813935925 11.70408016463118 0 1.7887254899964358 2 0.6237125054200234 0.28872548999643577 [YT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[KG]KT{M(Oxidation (M))|F};[YT][C(Carbamidomethyl (C))K][{I|L}T]R{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{I|L}Q[HS]Q{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[PG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]{I|L}[AG][HS]Q{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}Q[HS][AG]{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[TV]|[{I|L}S]}T{M(Oxidation (M))|F};[YT]{I|L}Q[HS][VP][YQ];[YT]{I|L}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YT]{I|L}Q[HS]{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.4792;4.5312;4.123;3.6192;3.3807;3.3807;3.3568;3.2106;3.1361;3.1176 -;-;-;-;-;-;-;-;-;- 2168 NaN NaN 241489 NaN 13500 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17111 72.816 NaN 343530 35 0 32944 0.264 -1 PDGSSKGC 8 57 404.1696931571729 806.3248333811458 2 404.1700744628906 MULTI HCD FTMS 0 0 0 17105 203334.25 0.02428272052979721 31 -0.8074874877929688 6 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 {I|L}[EP] 3 -1 2.9318 0 0 0.3636 0 0 449.15281874824376 0 449.15281874824376 0 2.9318250140072184 0 0 0 0 0 0 0 {I|L}[EP] 0.3636 - 1 NaN NaN 141521.8 NaN 13501 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17112 72.82 NaN 156460 35 0 23043 0.261 -1 0 45 525.2746207135264 1048.5346884938526 2 525.2745361328125 MULTI HCD FTMS 0 0 0 17105 57998.015625 0.7487436380079874 1 -0.03281402587890625 7 NaN NaN 2 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 2.8818 0 0 784.3870577338902 0 784.3870577338902 0 17.028937514676485 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.8818 - 19 + NaN NaN 131329.9 NaN 13502 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17113 72.823 NaN 316450 35 0 7807.8 0.261 + 34951 YSMNPSIRLL 10 68 597.3205763911199 1192.6265998490396 2 597.8235473632812 MULTI HCD FTMS 0 0 0 17105 59082.03125 0.23477656008209247 12 -0.3403778076171875 8 Unmodified _YSMNPSIRLL_ ENSG00000002587|ENST00000002596|HS3ST1 5.296884461304476 0.4472664531305844 2 {M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 3 9 12.205 0 0 1.0234 0 0 765.4516863742334 0 765.4516863742334 0 1.7474250108400469 0 0 0 0 0 0.3252574989159953 0 {M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM} 1.0234 - 54 + NaN NaN 153124.5 NaN 13503 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17114 72.826 NaN 192050 35 0 11236 0.261 -1 MPSVPDFETL 10 59 576.2683117017085 1150.522070470217 2 576.267822265625 MULTI HCD FTMS 0 0 0 17105 34451.53515625 0.20382306989826957 3 -0.08838653564453125 9 Oxidation (M) _M(Oxidation (M))PSVPDFETL_ ENSG00000141030|ENST00000268717|COPS3;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;ENST00000486810.5_1_17:17171351-17179368:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3 29.081581746732265 0.240155558137004 2 M{I|L}W 3 -1 24.693 0 0 2.1462 0 0 702.3233509748062 0 702.3233509748062 0 6.73393743112328 0 0 0 0 0 0 0 M{I|L}W 2.1462 - 120 NaN NaN 130947.7 NaN 13504 3608 17105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17116 72.831 NaN 2147500 35 0 809450 0.327 -1 0 73 413.19354773523565 824.3725425372713 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17115 1119290.625 0.9658893987831788 -1 0.03281402587890625 1 NaN NaN 2 {I|L} 1 -1 8.0989 0 0 0.98244 0 0 155.09640987755375 553.1690157525999 708.2654256301537 0 0 0 0 0 0.5 0 0 0 {I|L} 0.98244 - 16 + NaN NaN 417280.4 NaN 13505 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17117 72.836 NaN 1459800 35 0 124470 0.261 + 34483 YPFIIDAHL 9 96 544.7926696694888 1087.5707864057774 2 544.7926025390625 MULTI HCD FTMS 0 0 0 17115 854564.25 0.9077375287588493 1 -0.0294342041015625 2 Unmodified _YPFIIDAHL_ ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10 179.2298980043202 1.129651853483471E-12 2 YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L} 9 0 + 112.89 0 0 10.38 10.38 95.604 0 0 0 46.29493455131808 7.147642715192504 7.147642715192504 11.166501840742214 0 3.1237125054200234 1.6989700043360187 1.7034021960761265 0 + + YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}D{I|L}[HA];YP{I|L}{M(Oxidation (M))|F}{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{I|L}{M(Oxidation (M))|F}{I|L}D{I|L}[HA];YP{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L}DAH{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y{I|L}DAH{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}E{M(Oxidation (M))|F}{I|L};YP{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L} 10.38;9.3529;9.0696;8.8438;8.0428;8.0169;7.523;7.3652;7.2516;6.8165 +;-;-;+;-;-;-;-;-;- + 2919 + NaN NaN 314911.4 NaN 13506 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17118 72.839 NaN 1407400 35 0 310680 0.261 + 21630 PYPQYFTQL 9 100 578.7876836332324 1155.5608143332647 2 578.7877197265625 MULTI HCD FTMS 0 0 0 17115 601713.6875 0.8706150677041731 2 -0.055572509765625 3 Unmodified _PYPQYFTQL_ ENSG00000103160|ENST00000219439|HSDL1 106.94017166704063 0.003441928997083001 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L} 9 0 + 62.871 0 0 5.4407 5.4407 86.087 0 0 0 14.039843494254995 42.72038431917139 14.039843494254995 7.486964716146787 0 1.9049471895720984 1.3010299956639813 0.75 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}T[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}T[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{M(Oxidation (M))|F}TQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y{M(Oxidation (M))|F}[SG]VV;{[QN]|[E{I|L}]|[KN]}{[QD]|[EN]|[WG]|[KD]|[RS]}Y{M(Oxidation (M))|F}T[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{[WT]|[RM]}{M(Oxidation (M))|F}[SG]VV;[QT]QQY[KT]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QP]Y[{I|L}T]Q{M(Oxidation (M))|F} 5.4407;4.7928;4.6438;3.9959;3.4578;2.7431;2.6609;2.0952;1.9571;1.7711 +;-;-;-;-;-;-;-;-;- + 580 NaN NaN 302040.5 NaN 13507 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17119 72.843 NaN 1421800 35 0 272270 0.261 + 27278 SYPTFFPRF 9 94 581.2906142903571 1160.566675647514 2 581.2903442382812 MULTI HCD FTMS 0 0 0 17115 344250.90625 0.20830022397131426 10 -0.28470611572265625 4 Unmodified _SYPTFFPRF_ ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF 47.594388314883695 0.03493607795751234 2 {[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}M[R{I|L}] 9 2 {[{M(Oxidation (M))|F}C]|[YS]} + + 34.305 3.7236 1.4889 2.9559 2.9559 60.075 0 0 0 0 11.825988148312668 0 0 0 1.7856668758921828 0 0.3807196863200844 0 {[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}M[R{I|L}] 2.9559 - 878 + NaN NaN 317143.5 NaN 13508 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17120 72.846 NaN 931600 35 0 49345 0.261 -1 TYIYIQKCF 9 83 618.3107847224283 1234.6070165116564 2 618.815673828125 MULTI HCD FTMS 0 0 0 17115 123528 0.6052142423687297 1 -0.0294342041015625 5 Carbamidomethyl (C) _TYIYIQKC(Carbamidomethyl (C))F_ ENST00000383746.7_2_3:44396236-44396287:+|nuORF 39.957323273324995 0.06554068735427583 2 [YT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[KG]KT{M(Oxidation (M))|F} 10 -1 + 64.627 0 0 5.2346 5.2346 89.198 0 0 0 8.600840614449794 30.377582401078357 8.600840614449794 13.58349385648225 0 1.5 2 0.75 0.3252574989159953 [YT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[KG]KT{M(Oxidation (M))|F};[YT]{I|L}QQ[HS]V{I|L}{M(Oxidation (M))|F};[YT]{I|L}Q[HS]QV{I|L}{M(Oxidation (M))|F};[YT]{I|L}QQ[HS]{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}Q[HS]Q{I|L}[{M(Oxidation (M))|F}V];[YT]{I|L}Q[AG][HS]V{I|L}{M(Oxidation (M))|F};[YT]{I|L}[AG]Q[HS]V{I|L}{M(Oxidation (M))|F};[YT]{I|L}Q[HS][AG]V{I|L}{M(Oxidation (M))|F};[YT]{I|L}[AG][HS]QV{I|L}{M(Oxidation (M))|F};[YT]{I|L}[AG]Q[HS]{I|L}[{M(Oxidation (M))|F}V] 5.2346;4.1344;4.1126;4.0021;3.9804;3.3921;3.3921;3.3703;3.3703;3.2598 -;-;-;-;-;-;-;-;-;- 649 NaN NaN 238198.6 NaN 13509 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17121 72.849 NaN 364870 35 0 69265 0.261 + 17876 MIHGGEIQQT 10 63 557.2726858369243 NaN 0 557.2899169921875 PEAK HCD FTMS 0 0 0 17115 20643.2421875 0.8622635235348192 -1 0.03281402587890625 6 Unmodified _MIHGGEIQQT_ ENSG00000112983|ENST00000254900|BRD8;ENST00000471892.6_1_5:137503584-137506561:-|nuORF;nc|ENSG00000112983|Q9H0E9-2|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8 10.073929032068715 0.33156240198919784 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 9 14.693 0 0 1.3207 0 0 131.05823393879285 587.2573946588499 718.3156285976427 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 1.3207 - 92 + NaN NaN 146330.6 NaN 13510 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17122 72.853 NaN 727710 35 0 159130 0.261 + 15409 LPDIKVLTL 9 77 506.3262017186305 1010.637850504061 2 506.3260803222656 MULTI HCD FTMS 0 0 0 17115 256611.53125 0.6286429250915645 -1 0.03281402587890625 7 Unmodified _LPDIKVLTL_ ENSG00000115241|ENST00000344034|PPM1G;ENST00000472077.1_1_2:27604468-27607956:-|nuORF 75.5705956163825 0.007285660612518157 2 [{I|L}P]D{I|L}KV{I|L}T{I|L} 9 0 + 75.404 0 0 7.461 7.461 88.112 0 0 0 6.233354070789474 46.02436391162165 6.233354070789474 3.7628749457997657 0 2.3494850021680094 1.6989700043360187 0.3807196863200844 0 + + [{I|L}P]D{I|L}KV{I|L}T{I|L};[{I|L}P]D{I|L}KVT{I|L}{I|L};[{I|L}P]D{I|L}KTV{I|L}{I|L};[DP]{I|L}{I|L}KV{I|L}T{I|L};[DP]{I|L}{I|L}KVT{I|L}{I|L};[DP]{I|L}{I|L}KTV{I|L}{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]V{I|L}T{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]VT{I|L}{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]TV{I|L}{I|L};[{I|L}T][VP][VG]V{I|L}T{I|L} 7.461;7.0887;6.3491;4.8914;4.5191;3.7795;3.7624;3.3901;2.6506;2.3741 +;-;-;-;-;-;-;-;-;- + 381 NaN NaN 197507.6 NaN 13511 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17123 72.856 NaN 196850 35 0 22744 0.261 + 22283 QPDVVVVEL 9 64 499.2818096160929 996.5490662989858 2 499.2820739746094 MULTI HCD FTMS 0 0 0 17115 91453.4375 0.8704122271903478 -4 0.1245880126953125 8 Unmodified _QPDVVVVEL_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 24.990960013464015 0.14443998892849796 2 VVE{I|L} 4 5 46.186 0 0 4.6346 0 0 538.2739124982437 0 538.2739124982437 0 43.7113751626007 0 0 0 1.4247425010840047 0 0 0 + VVE{I|L} 4.6346 + + 60 NaN NaN 123592.8 NaN 13512 3609 17115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17125 72.861 NaN 555020 35 0 69653 0.327 + 6581 FPLDLDVKM 9 79 539.2862077323906 1076.5578625315811 2 539.2864990234375 MULTI HCD FTMS 0 0 0 17124 260439.046875 0.4828846677322436 -12 0.360504150390625 1 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 74.19965305603844 0.007729275404663812 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM 9 0 + 72.488 0 0 6.7333 6.7333 87.766 0 0 0 6.461280356782382 11.901056208558032 6.461280356782382 6.461280356782382 0 2.385151878060192 1.3979400086720375 0.6747425010840047 0.3807196863200844 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM;[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}DVKM;[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}Q{I|L}TM;[{I|L}P]D{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}VKM;{M(Oxidation (M))|F}P{I|L}D{I|L}[AG]{I|L}TM;{M(Oxidation (M))|F}P{I|L}DVVEKM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}E{I|L}[KC];[{I|L}P]D{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F}KM 6.7333;6.1332;5.6279;5.5734;4.9087;4.5219;4.0534;3.8649;3.3382;3.1736 +;-;+;-;-;-;-;-;-;- + 679 NaN NaN 177620.7 NaN 13513 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17126 72.865 NaN 527910 35 0 38493 0.261 -1 CVGVKCVYF 9 79 566.2696847001648 NaN 0 566.2887573242188 PEAK HCD FTMS 0 0 0 17124 8056.40234375 0.3560747062512598 1 -0.0261383056640625 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))VGVKC(Carbamidomethyl (C))VYF_ ENST00000544844.5_1_11:64085187-64085430:-|nuORF 12.531546534597751 0.23452071659215576 2 QVYT 4 -1 24.923 0 0 2.2045 0 0 165.04014173662853 471.21787439517817 636.2580161318067 0 0 0 0 0 0 0 0.4247425010840047 0.3252574989159953 QVYT 2.2045 - 276 + NaN NaN 169492.1 NaN 13514 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17127 72.869 NaN 725160 35 0 54075 0.261 + 19833 NYAWVYYHL 9 79 614.7931119449629 1227.5716709567257 2 614.7930908203125 MULTI HCD FTMS 0 0 0 17124 296321.6875 0.004664645911440363 140 -3.2568435668945312 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 78.7280429016045 0.006263961847259105 2 [YN]AWVYYH{I|L} 9 0 + 83.628 0 0 6.8125 6.8125 94.83 0 0 0 17.44747904818871 16.478174818886373 16.478174818886373 62.70324166042562 0 2.412437995416459 1.6989700043360187 0 1.1421590589602533 + + [YN]AWVYYH{I|L};[WY]{[QG]|[NA]}VYYH{I|L};[MT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V[HA]YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}D]|MM}V[HA]YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]H{[MS]|[{M(Oxidation (M))|F}A]}YH{I|L};[DV]{[QV]|[N{I|L}]|[RA]|[KV]}H{[MS]|[{M(Oxidation (M))|F}A]}YH{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[DV]{M(Oxidation (M))|F}[HA]YH{I|L};[DV]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[HA]YH{I|L} 6.8125;1.7046;0.86408;0.74504;0.48985;0.44261;0.43531;0.38807 +;-;-;-;-;-;-;- + 665 NaN NaN 203331.4 NaN 13515 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17128 72.872 NaN 616490 35 0 129300 0.261 + 16285 LQPFIYYRF 9 73 623.8344934083583 1245.6544338835165 2 624.33642578125 MULTI HCD FTMS 0 0 0 17124 157263.625 0.7039348676068065 1 -0.0261383056640625 4 Unmodified _LQPFIYYRF_ ENSG00000109133|ENST00000504986|TMEM33 34.40172386719151 0.0910440009062557 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PK{I|L}Y[YR]{M(Oxidation (M))|F} 9 2 + 42.442 0 0 3.4072 3.4072 87.005 0 0 0 14.03618841522599 12.706648542812843 12.706648542812843 14.03618841522599 0 1.1069758080123702 1.3010299956639813 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PK{I|L}Y[YR]{M(Oxidation (M))|F};[Q{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YYR{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PK{I|L}Y[NP][RV];[Q{I|L}]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YRY{M(Oxidation (M))|F} 3.4072;2.2804;2.1847;2.1801 -;+;-;- + 261 NaN NaN 177691.5 NaN 13516 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17129 72.875 NaN 227390 35 0 18660 0.261 + 25325 SCYYKKHAIF 10 53 630.3151043893896 1258.615655845579 2 630.3189697265625 MULTI HCD FTMS 0 0 0 17124 82582.3203125 0.6113801034053241 5 -0.13414764404296875 5 Unmodified _SCYYKKHAIF_ REV__ENSG00000179588|ENST00000319555|ZFPM1 17.11289562659939 0.35104376501799556 2 [YN]{I|L}[R{M(Oxidation (M))|F}]{[ES]|[DT]|[{I|L}C]}A{I|L}{M(Oxidation (M))|F} 10 -1 + 53.936 0 0 4.2853 4.2853 84.341 0 0 0 20.9936247538461 42.96651852994231 20.9936247538461 7.3290220443144705 0 1.3807196863200843 1.5228787452803376 1.3807196863200843 0 [YN]{I|L}[R{M(Oxidation (M))|F}]{[ES]|[DT]|[{I|L}C]}A{I|L}{M(Oxidation (M))|F};[YN]{I|L}[R{M(Oxidation (M))|F}]{[WT]|[RM]}{I|L}{M(Oxidation (M))|F} 4.2853;3.703 -;- 74 NaN NaN 143224.2 NaN 13517 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17130 72.879 NaN 182980 35 0 16812 0.262 + 6536 FPKWFICC 8 59 522.2459255675757 1042.4772982019513 2 522.2454223632812 MULTI HCD FTMS 0 0 0 17124 43475.2109375 0.4683030207451644 2 -0.0523223876953125 6 Unmodified _FPKWFICC_ REV__ENST00000557151.5_3_14:72054459-72054531:+|nuORF 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F}PA 3 -1 22.224 0 0 2.1318 0 0 0 724.2929781549436 724.2929781549436 5.769921747127498 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}PA 2.1318 - 29 + NaN NaN 114083.8 NaN 13518 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17131 72.882 NaN 241710 35 0 10239 0.261 + 20359 NYSYIFKYI 9 69 605.8104256852588 1209.6062984373175 2 606.3112182617188 MULTI HCD FTMS 0 0 0 17124 36951.73828125 0.545027280618575 -2 0.06224822998046875 7 Unmodified _NYSYIFKYI_ ENSG00000119396|ENST00000373840|RAB14 49.52724829834842 0.03223213920720493 2 [YN]SY{I|L}{M(Oxidation (M))|F}KY{I|L} 9 0 + 82.642 0 0 6.8321 6.8321 94.357 0 0 0 61.67280924645823 11.39506772603255 11.39506772603255 44.330984399557416 0 2.4291746928241125 1.5228787452803376 0 0.4247425010840047 + + [YN]SY{I|L}{M(Oxidation (M))|F}KY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{M(Oxidation (M))|F}{I|L}YS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][RH]{I|L}YS{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8321;3.1672;2.8604 +;-;- + 200 + NaN NaN 123160.4 NaN 13519 3610 17124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17133 72.887 NaN 2295600 35 0 708710 0.326 + 23321 RISLPLPNF 9 81 528.8138131907656 1055.613073448331 2 528.8138427734375 MULTI HCD FTMS 0 0 0 17132 1125408.5 0.8922961347869177 -1 0.0261383056640625 1 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 75.5705956163825 0.007285660612518157 2 [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F} 9 0 + 81.991 0 0 7.7672 7.7672 91.675 0 0 0 3.7371250542002343 3.7371250542002343 3.7371250542002343 9.208187539523749 0 3.055462187404089 0 0.7614393726401688 0 + + [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}PGG{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}{M(Oxidation (M))|F}[NP];[R{I|L}]S{I|L}P[QP]V{M(Oxidation (M))|F} 7.7672;6.8949;4.5723;3.5241 +;-;-;- + 376 NaN NaN 433934.1 NaN 13520 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17134 72.891 NaN 776400 35 0 49849 0.261 + 35041 YTIPHSSQRF 10 90 618.3107847224283 1234.6070165116564 2 618.3130493164062 MULTI HCD FTMS 0 0 0 17132 137775.65625 0.4700486166640013 2 -0.05229949951171875 2 Unmodified _YTIPHSSQRF_ REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF 28.494509381512117 0.24525010509582015 2 [YT]{I|L}Q 4 -1 47.945 0 0 3.8834 0 0 0 726.3363871341943 726.3363871341943 3.9839440421015837 0 0 0 0 0.75 2 0 0.4247425010840047 [YT]{I|L}Q 3.8834 - 601 + NaN NaN 203985.2 NaN 13521 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17135 72.895 NaN 480670 35 0 84766 0.261 -1 VIEDVQCPDIM 11 67 639.2909621146862 1276.5673712961723 2 639.30419921875 MULTI HCD FTMS 0 0 0 17132 63946.8046875 0.49604761994512153 -1 0.0261383056640625 3 Oxidation (M) _VIEDVQCPDIM(Oxidation (M))_ ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant 20.41453444215458 0.279209903849948 2 {M(Oxidation (M))|F}EP{I|L}{I|L} 5 -1 35.177 0 0 2.7556 0 0 659.2263050763687 0 659.2263050763687 0 3.6366712033788673 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}EP{I|L}{I|L} 2.7556 - 130 NaN NaN 156953.4 NaN 13522 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17136 72.898 NaN 217110 35 0 27687 0.261 + 23445 RLPLRLFLI 9 63 570.8846629459014 1139.7547729586026 2 570.8844604492188 MULTI HCD FTMS 0 0 0 17132 94802.1796875 0.2024129091042414 9 -0.25199127197265625 4 Unmodified _RLPLRLFLI_ ENSG00000099194|ENST00000370355|SCD 7.910154910731844 0.2910521888787154 2 {I|L}R{I|L} 3 6 26.995 0 0 2.3685 0 0 0 754.4607027643186 754.4607027643186 18.411290632962718 0 0 0 0 0 0 0 0.3807196863200844 + {I|L}R{I|L} 2.3685 + + 36 + NaN NaN 122762.2 NaN 13523 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17137 72.902 NaN 195970 35 0 23135 0.262 -1 VPMEDINL 8 49 473.73125633104536 945.4479597288907 2 473.73095703125 MULTI HCD FTMS 0 0 0 17132 96913.7890625 0.12680812230139696 39 -1.0169906616210938 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 16.942295170755138 0.46913822049235215 2 {I|L}N{I|L} 3 -1 33.94 0 0 3.5898 0 0 587.2258521798891 0 587.2258521798891 0 19.336068845642203 0 0 0 0.4247425010840047 0 0 0.3494850021680094 {I|L}N{I|L} 3.5898 + + 28 NaN NaN 112816.2 NaN 13524 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17138 72.905 NaN 239200 35 0 39172 0.261 + -1 FDLVECVF 8 41 514.7416128901307 1027.4686728470613 2 514.74169921875 MULTI HCD FTMS 0 0 0 17132 76380.40625 0.720891104629908 6 -0.17017364501953125 6 Carbamidomethyl (C) _FDLVEC(Carbamidomethyl (C))VF_ REV__ENSG00000123908|ENST00000220592|AGO2;REV__nc|ENSG00000123908|Q9UKV8-2|AGO2 6.354104778181461 0.5325651638111438 2 NC(Carbamidomethyl (C))V{M(Oxidation (M))|F} 4 -1 26.731 0 0 2.6017 0 0 489.25927450897376 0 489.25927450897376 0 16.273661928763246 0 0 0 0 0 0 0 NC(Carbamidomethyl (C))V{M(Oxidation (M))|F} 2.6017 - 29 + NaN NaN 121800.7 NaN 13525 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17139 72.908 NaN 238580 35 0 11070 0.261 + 20721 PFVDHVFTF 9 73 554.776742126838 1107.538931320476 2 554.7761840820312 MULTI HCD FTMS 0 0 0 17132 77931.8515625 0.024019100652758182 39 -1.0169906616210938 7 Unmodified _PFVDHVFTF_ ENSG00000113460|ENST00000336767|BRIX1 88.90359156742426 0.00455469703666567 2 RV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5 5 45.132 0 0 4.0749 0 0 439.1617603986344 0 439.1617603986344 0 31.358571615857265 0 0 0 1.1203715150305282 0 0.5 0 RV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.0749 - 192 NaN NaN 130153.7 NaN 13526 3611 17132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17141 72.913 NaN 12402000 35 0 2654200 0.327 + 24257 RYFLPPYTF 9 89 602.3135033827217 1202.6124538322433 2 602.314208984375 MULTI HCD FTMS 0 0 0 17140 8329157 0.9513683901046303 -4 0.11457061767578125 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 114.6490535036381 0.0021834323520089267 2 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 91.181 0 0 7.5819 7.5819 94.575 0 0 0 6.32068444291761 6.32068444291761 6.32068444291761 24.489700043360187 0 2.4802046884880937 1.154901959985743 0.4247425010840047 0.25 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]H{I|L}P{I|L}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}[YV]T{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PP{I|L}[YR]{M(Oxidation (M))|F};[YT]P{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F} 7.5819;5.5455;4.4139;3.5175;2.7613;2.5821;2.511;2.4304;2.4304;2.3318 +;-;-;-;-;-;-;-;-;- + 1608 NaN NaN 782169.2 NaN 13527 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17142 72.917 NaN 1525200 35 0 241440 0.261 + 29908 VFDPKVFTF 9 82 550.2948858009202 1098.5752186686402 2 550.2948608398438 MULTI HCD FTMS 0 0 0 17140 704249.125 0.22846596148969076 7 -0.20294952392578125 2 Unmodified _VFDPKVFTF_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 71.70789743142352 0.008535567138151097 2 [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 47.546 0 0 4.328 4.328 81.87 0 0 0 1.2324929039790078 6.003793646015652 1.2324929039790078 1.2324929039790078 0 2.548455006504028 0 0 0 + + [{M(Oxidation (M))|F}V]DPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VPKV{M(Oxidation (M))|F}T{M(Oxidation (M))|F};V{M(Oxidation (M))|F}[NP][YT]{I|L}V{M(Oxidation (M))|F} 4.328;4.2158;2.6688 +;-;- + 221 NaN NaN 325148.6 NaN 13528 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17143 72.921 NaN 1741200 35 0 145050 0.261 + -1 FVRTRTMHH 9 109 600.8067566166585 1199.598960300117 2 600.8067016601562 MULTI HCD FTMS 0 0 0 17140 710484.875 0.303582585781799 -4 0.11457061767578125 3 Oxidation (M) _FVRTRTM(Oxidation (M))HH_ REV__ENST00000409331.6_1_2:85584367-85590229:+|nuORF;REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF 30.636539890814138 0.10832830463492794 2 R{I|L}Q{M(Oxidation (M))|F}DE{M(Oxidation (M))|F} 7 -1 83.087 0 0 6.9263 0 0 246.13585097480626 0 246.13585097480626 0 50.95536435372202 0 0 0 2.5356668758921828 0 0.4247425010840047 1.024227503252014 R{I|L}Q{M(Oxidation (M))|F}DE{M(Oxidation (M))|F} 6.9263 - 4176 NaN NaN 364637.6 NaN 13529 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17144 72.924 NaN 359230 35 0 67025 0.261 + 33416 YGRTQMTLTF 10 53 609.3028799882109 1216.5912070432216 2 609.3023681640625 MULTI HCD FTMS 0 0 0 17140 134788.890625 0.6913593633891711 -3 0.081756591796875 4 Unmodified _YGRTQMTLTF_ ENSG00000029639|ENST00000367166|TFB1M 11.494710602746466 0.4035943721457025 2 T{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1346 0 0 950.465603564992 0 950.465603564992 0 11.354837468149126 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1346 + + 211 NaN NaN 142577 NaN 13530 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17145 72.928 NaN 395320 35 0 73138 0.261 -1 CVRATCAALW 10 77 575.7789830697235 1149.543413206247 2 576.2803955078125 MULTI HCD FTMS 0 0 0 17140 106492.2734375 0.1995239854247927 -8 0.235870361328125 5 Carbamidomethyl (C) _CVRATC(Carbamidomethyl (C))AALW_ ENST00000448504.6_1_17:66255373-66303138:+|nuORF 7.289230182591677 0.43672065049472153 2 {M(Oxidation (M))|F}S{I|L}{[QG]|[NA]} 5 -1 21.95 0 0 1.9095 0 0 599.268846580275 0 599.268846580275 0 0.9813624419633271 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}S{I|L}{[QG]|[NA]} 1.9095 - 149 NaN NaN 154928.1 NaN 13531 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17146 72.931 NaN 349070 35 0 58462 0.261 -1 AGHCRMAPL 9 49 514.7416128901307 1027.4686728470613 2 514.7415771484375 MULTI HCD FTMS 0 0 0 17140 56192.8828125 0.5303578673102711 7 -0.20294952392578125 6 Carbamidomethyl (C),Oxidation (M) _AGHC(Carbamidomethyl (C))RM(Oxidation (M))APL_ ENST00000428254.5_1_20:25604798-25612818:+|nuORF 7.289230182591677 0.29575926068275815 2 C(Carbamidomethyl (C))V{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.5498 0 0 603.2916231417863 0 603.2916231417863 0 7.341284356197232 0 0 0 0 0 0 0 C(Carbamidomethyl (C))V{M(Oxidation (M))|F} 2.5498 - 51 + NaN NaN 139757.8 NaN 13532 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17147 72.934 NaN 231650 35 0 28417 0.261 + 448 ALLSASFGGFL 11 64 541.7977982783437 1081.5810436234874 2 541.7971801757812 MULTI HCD FTMS 0 0 0 17140 72257.6796875 0.6367502723353357 7 -0.20294952392578125 7 Unmodified _ALLSASFGGFL_ REV__ENST00000487651.5_1_7:100457471-100457768:+|nuORF 5.296884461304476 0.39569033063702824 2 VA{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.4222 0 0 746.3963340061031 0 746.3963340061031 0 9.030899869919434 0 0 0 0 0 0 0 VA{M(Oxidation (M))|F} 2.4222 - 20 + NaN NaN 124730.7 NaN 13533 3612 17140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17149 72.939 NaN 1248300 35 0 220420 0.327 + 30873 VQPRNWLLF 9 78 586.8323109501486 1171.650068967097 2 586.832763671875 MULTI HCD FTMS 0 0 0 17148 683775.625 0.20441325504885555 8 -0.23584747314453125 1 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 64.23631603340823 0.01165516075559909 2 {[QV]|[N{I|L}]|[RA]|[KV]}[RP]NW{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 66.163 0 0 5.647 5.647 63.325 0 0 0 10.787268505095042 21.575221787320515 10.787268505095042 0 0 1.805462187404089 0 0 1.0994850021680094 + + {[QV]|[N{I|L}]|[RA]|[KV]}[RP]NW{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[PG]VNW{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[PG]VWN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WQV{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[PG]VW{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]GGW{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WGG{I|L}{I|L}{M(Oxidation (M))|F} 5.647;5.647;5.4832;5.4832;5.3329;5.0275;5.0128;4.8637;4.861;4.861 +;-;-;-;-;-;-;-;-;- + 1178 NaN NaN 279755.7 NaN 13534 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17150 72.944 NaN 771470 35 0 102420 0.261 + 21331 PSSPVRFPAL 10 75 535.8036534247118 NaN 0 535.787353515625 PEAK HCD FTMS 0 0 0 17148 10254.7275390625 0.4284562326208609 2 -0.0557098388671875 2 Unmodified _PSSPVRFPAL_ REV__chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1 6.723162845929126 0.3344301934401713 2 VTKM{M(Oxidation (M))|F}P 6 -1 16.72 0 0 1.5632 0 0 164.0931944453235 199.10874353580314 363.20193798112666 0 0 0 0 0 0 0 0 0 VTKM{M(Oxidation (M))|F}P 1.5632 - 322 + NaN NaN 205705.4 NaN 13535 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17151 72.947 NaN 956010 35 0 156480 0.261 + 27238 SYNPLWLRI 9 86 581.3242008687558 1160.6338488043116 2 581.3246459960938 MULTI HCD FTMS 0 0 0 17148 236972.703125 0.045864132492742425 17 -0.43824005126953125 3 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 40.23920728925047 0.06424668180817725 2 {[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]W{I|L}R{I|L} 9 0 + 36.845 0 0 3.1746 3.1746 85.497 0 0 0 12.754989640266466 9.889917747712651 9.889917747712651 9.208187539523756 0 1.9731975075880328 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]W{I|L}R{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GG[{I|L}P]W{I|L}R{I|L};[HM]{[QV]|[N{I|L}]|[RA]|[KV]}[HQ]{I|L}R{I|L} 3.1746;2.3812;0.03748 +;-;- + 1585 + NaN NaN 241065.9 NaN 13536 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17152 72.951 NaN 923260 35 0 143860 0.261 + -1 TYKGMMDYIS 10 97 612.7685526721642 NaN 0 612.7535400390625 PEAK HCD FTMS 0 0 0 17148 14348.009765625 1 0 0 4 Oxidation (M) _TYKGM(Oxidation (M))MDYIS_ REV__ENSG00000120049|ENST00000356640|KCNIP2;REV__ENST00000355657.6_1_10:103587112-103588944:-|nuORF;REV__ENST00000472764.5_1_10:103587112-103590834:-|nuORF;REV__nc|ENSG00000120049|Q9NS61-2|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-3|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-4|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-5|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-6|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-7|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-8|KCNIP2;REV__nc|ENSG00000120049|Q9NS61-9|KCNIP2 8.745405648335112 0.33269943387702366 2 G{M(Oxidation (M))|F}YHD 5 -1 20.578 0 0 1.6819 0 0 292.13744650821826 309.12497888736567 601.2624253955839 0 0 0 0 0 0 0 0.7302046884880937 0 G{M(Oxidation (M))|F}YHD 1.6819 - 988 + NaN NaN 235757.8 NaN 13537 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17153 72.954 NaN 996120 35 0 76796 0.261 + 3566 EIVWWELF 8 99 561.2885710491917 1120.5625891651832 2 562.3052368164062 MULTI HCD FTMS 0 0 0 17148 79629.921875 0.7694654342492717 -1 0.02611541748046875 5 Unmodified _EIVWWELF_ REV__ENSG00000103335|ENST00000301015|PIEZO1;REV__ENST00000484567.5_1_16:88782015-88783673:-|nuORF;REV__ENST00000521877.1_1_16:88782015-88782615:-|nuORF 19.438996006549623 0.45076845602799126 2 E{I|L}MS{I|L}[WP]V{M(Oxidation (M))|F} 9 -1 + 53.382 0 0 4.7639 4.7639 88.479 0 0 0 11.497972112521921 12.147642715192504 11.497972112521921 13.494850021680087 0 0 0 0.6549471895720984 0 E{I|L}MS{I|L}[WP]V{M(Oxidation (M))|F};E{M(Oxidation (M))|F}PS{I|L}[WP]V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}{I|L}D[DV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}{I|L}{[CP]|[EA]}E;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}VV{I|L}D[DV];{M(Oxidation (M))|F}EPS{I|L}[WP]V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]{I|L}SPEE;[MT]D{I|L}{I|L}[WP]V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[R{M(Oxidation (M))|F}]{I|L}{I|L}D[DV];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}VVD[DV] 4.7639;3.5596;2.9836;2.715;2.6996;2.5926;2.5469;2.5061;2.4604;2.431 -;-;-;-;-;-;-;-;-;- 3120 + NaN NaN 238222.9 NaN 13538 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17154 72.957 NaN 542320 35 0 91282 0.261 + 25880 SMTRYFYLF 9 73 622.2946879862326 1242.574823039265 2 622.2949829101562 MULTI HCD FTMS 0 0 0 17148 203199.625 0.08602376834332183 19 -0.47696685791015625 6 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 43.77239144664712 0.04802738721622131 2 YNAHNS{I|L}{M(Oxidation (M))|F} 8 7 38.471 0 0 3.0961 0 0 278.1627369611344 0 278.1627369611344 0 19.774203573568204 0 0 0 0.6989700043360187 0 0.805462187404089 0.2614393726401688 YNAHNS{I|L}{M(Oxidation (M))|F} 3.0961 - 562 NaN NaN 171725.2 NaN 13539 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17155 72.96 NaN 408760 35 0 40751 0.261 + 29299 TYMETYVYF 9 77 616.7632431765091 1231.5119334198182 2 616.7628173828125 MULTI HCD FTMS 0 0 0 17148 142601.53125 0.5666917791517858 2 -0.0557098388671875 7 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ ENSG00000013563|ENST00000369807|DNASE1L1 57.47134341890925 0.0211188941628804 2 TYVY{M(Oxidation (M))|F} 5 4 62.757 0 0 5.0959 0 0 540.1880360334 0 540.1880360334 0 41.0745943295667 0 0 0 1.6237125054200234 0 1.579689690656103 0 + TYVY{M(Oxidation (M))|F} 5.0959 + + 198 NaN NaN 152508 NaN 13540 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17156 72.964 NaN 603650 35 0 132550 0.263 + 25148 SAIHILDVL 9 64 490.7924666045579 979.5703802759158 2 490.7926025390625 MULTI HCD FTMS 0 0 0 17148 183561.375 0.29697868596086086 -3 0.07843780517578125 8 Unmodified _SAIHILDVL_ ENSG00000137200|ENST00000373451|CMTR1 61.357469665136826 0.01568246967499496 2 {I|L}{I|L}DV{I|L} 5 4 48.544 0 0 4.9557 0 0 408.2111988751969 0 408.2111988751969 0 22.602131414518922 0 0 0 0.9247425010840047 0 0.7614393726401688 0 + {I|L}{I|L}DV{I|L} 4.9557 + + 104 NaN NaN 180008.9 NaN 13541 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17157 72.967 NaN 381950 35 0 55344 0.261 + 33417 YGRTQMTLTF 10 61 609.3028799882109 1216.5912070432216 2 609.8049926757812 MULTI HCD FTMS 0 0 0 17148 122744.3046875 0.8844981135423553 1 -0.03617095947265625 9 Unmodified _YGRTQMTLTF_ ENSG00000029639|ENST00000367166|TFB1M 11.494710602746466 0.4035943721457025 2 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 5 6 31.95 0 0 2.6262 0 0 593.2957402539607 0 593.2957402539607 0 13.841349888432358 0 0 0 0.8494850021680094 0 0.4247425010840047 0 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.6262 - 57 NaN NaN 145084.9 NaN 13542 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17158 72.97 NaN 463430 35 0 163890 0.263 -1 LSPNMPMK 8 53 467.23038610231197 932.446219271424 2 467.2303466796875 MULTI HCD FTMS 0 0 0 17148 69172.0546875 1 0 0 10 Oxidation (M) _LSPNM(Oxidation (M))PMK_ ENSG00000141431|ENST00000269197|ASXL3 8.593279151180031 0.5292430274356741 2 {I|L}{I|L} 2 -1 20.969 0 0 2.2488 0 0 688.2662677152932 0 688.2662677152932 0 12.552725051033063 0 0 0 0 0 0 0 {I|L}{I|L} 2.2488 - 31 NaN NaN 166078.3 NaN 13543 3613 17148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17160 72.975 NaN 1212600 35 0 213090 0.327 + 25929 SPASDTYIVF 10 79 550.269003176249 1098.523453419298 2 550.269287109375 MULTI HCD FTMS 0 0 0 17159 578525.1875 0.8605072179151736 -2 0.062286376953125 1 Unmodified _SPASDTYIVF_ ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA 37.97399986684836 0.1629881689457739 2 TY{I|L}V{M(Oxidation (M))|F} 5 5 44.641 0 0 4.0637 0 0 457.1811695783219 0 457.1811695783219 0 29.948500216800937 0 0 0 1.4247425010840047 0 0.7742275032520141 0 + TY{I|L}V{M(Oxidation (M))|F} 4.0637 + + 250 NaN NaN 273466.8 NaN 13544 3614 17159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17161 72.98 NaN 762020 35 0 160120 0.261 -1 FPANVMDVI 9 68 511.25480385671625 1020.4950547802325 2 511.2548522949219 MULTI HCD FTMS 0 0 0 17159 377986.15625 0.5315550752712366 12 -0.328216552734375 2 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 22.736283301280096 0.1639198954644489 2 [DV][WK]{M(Oxidation (M))|F}DV{I|L} 8 -1 + 38.466 0 0 3.7693 3.7693 88.396 0 0 0 0.9421249706470292 19.704999916446795 0.9421249706470292 21.76599703664159 0 0.7302046884880937 0 0.3054621874040891 0.3494850021680094 [DV][WK]{M(Oxidation (M))|F}DV{I|L};[DV][WK][DV]{M(Oxidation (M))|F}{I|L};[DV][WK]{M(Oxidation (M))|F}[{I|L}V]D;[DV][{I|L}T][WQ]{M(Oxidation (M))|F}{I|L} 3.7693;1.6364;1.3677;0.53145 -;-;-;- 217 NaN NaN 203096.3 NaN 13545 3614 17159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17162 72.983 NaN 199540 35 0 19180 0.262 + 28803 TTSMHSGS 8 41 404.1696931571729 806.3248333811458 2 404.1698303222656 MULTI HCD FTMS 0 0 0 17159 178336.75 0.021297452153005766 37 -0.9513168334960938 3 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 2 N 1 -1 4.2217 0 0 0.52357 0 0 201.0461352236394 488.2103365533813 689.2564717770207 0 0 0 0 0 0.3252574989159953 0 0 0 N 0.52357 - 4 + NaN NaN 129644.7 NaN 13546 3614 17159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17163 72.987 NaN 320530 35 0 64839 0.261 + 8407 GYPLWKVTF 9 73 555.8025935526008 1109.5906341720015 2 555.802734375 MULTI HCD FTMS 0 0 0 17159 78143.296875 0.02330135526969644 31 -0.7977371215820312 4 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 38.175570920033316 0.07371992880350783 2 [YG]{I|L}Q{I|L} 5 6 37.703 0 0 3.3979 0 0 0 532.2386112266606 532.2386112266606 1.940745975737883 0 0 0 0 0 1.6989700043360187 0 0 [YG]{I|L}Q{I|L} 3.3979 - 336 + NaN NaN 143712 NaN 13547 3614 17159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17164 72.99 NaN 93217 35 0 5616.7 0.261 + 13287 KYMDINFDF 9 41 596.7711176425278 1191.5276823518554 2 596.7731323242188 MULTI HCD FTMS 0 0 0 17159 24953.947265625 0.0075912418427022555 42 -1.0915145874023438 5 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 10.150570793230772 0.27265765907388223 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 5 41.186 0 0 3.4565 0 0 650.3081219454266 0 650.3081219454266 0 41.18562527100117 0 0 0 0.9247425010840047 0 0 0 + N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.4565 + + 11 NaN NaN 104702.9 NaN 13548 3614 17159 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17166 72.995 NaN 1933400 35 0 716030 0.327 -1 0 77 413.19354773523565 824.3725425372713 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17165 764783.3125 0.6599680881898149 5 -0.14398193359375 1 NaN NaN 2 {I|L} 1 -1 9.2217 0 0 1.1186 0 0 556.1934176366839 152.07183252506096 708.2652501617448 0 0 0 0 0 0.6747425010840047 0 0 0 {I|L} 1.1186 - 18 + NaN NaN 380039.7 NaN 13549 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17167 72.999 NaN 804330 35 0 115780 0.261 + 6582 FPLDLDVKM 9 87 539.2862077323906 1076.5578625315811 2 539.2863159179688 MULTI HCD FTMS 0 0 0 17165 371501.125 0.6888068416019067 -7 0.1963958740234375 2 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 71.70789743142352 0.008535567138151097 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM 9 0 + 93.515 0 0 8.6865 8.6865 91.295 0 0 0 9.890139315225667 14.973024840566467 9.890139315225667 7.016675202793721 0 2.6237125054200234 1.5228787452803376 0.7742275032520141 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DD{I|L}VKM;[{I|L}P]{M(Oxidation (M))|F}D{I|L}DVKM;[{I|L}P]{M(Oxidation (M))|F}DD{I|L}VKM;[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}DVKM;[{I|L}P]D{M(Oxidation (M))|F}D{I|L}VKM;M{I|L}{I|L}D{I|L}Q[TP]{M(Oxidation (M))|F};M{I|L}{I|L}D{I|L}P[QT]{M(Oxidation (M))|F};M{I|L}{I|L}D{I|L}P[TA]G{M(Oxidation (M))|F} 8.6865;8.0347;7.7678;7.116;7.0937;6.6055;6.4419;6.1349;5.8553;5.7392 +;-;-;-;-;+;-;-;-;- + 721 NaN NaN 225289.5 NaN 13550 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17168 73.003 NaN 441620 35 0 81967 0.261 + 15410 LPDIKVLTL 9 70 506.3262017186305 1010.637850504061 2 506.3260192871094 MULTI HCD FTMS 0 0 0 17165 165688.265625 0.40590052772949237 5 -0.14398193359375 3 Unmodified _LPDIKVLTL_ ENSG00000115241|ENST00000344034|PPM1G;ENST00000472077.1_1_2:27604468-27607956:-|nuORF 61.08992128646608 0.016056751534446034 2 [{I|L}P]D{I|L}KV{I|L}T{I|L} 9 0 + 68.146 0 0 6.7429 6.7429 86.746 0 0 0 1.2333540707894741 46.591248097545304 1.2333540707894741 3.706290716515923 0 1.9247425010840047 1.6989700043360187 0.3807196863200844 0 + + [{I|L}P]D{I|L}KV{I|L}T{I|L};[{I|L}P]D{I|L}KVT{I|L}{I|L};[DP]{I|L}{I|L}KV{I|L}T{I|L};[DP]{I|L}{I|L}KVT{I|L}{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]V{I|L}T{I|L};[{I|L}P]{[TV]|[{I|L}S]}[VG]VT{I|L}{I|L};[{I|L}T][VP][VG]V{I|L}T{I|L};[{I|L}T][VP][VG]VT{I|L}{I|L} 6.7429;6.3761;4.0287;3.662;3.5612;3.1945;0.99165;0.62492 +;-;-;-;-;-;-;- + 132 NaN NaN 179699.4 NaN 13551 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17169 73.006 NaN 898320 35 0 37303 0.261 + 34484 YPFIIDAHL 9 94 544.7926696694888 1087.5707864057774 2 544.7927856445312 MULTI HCD FTMS 0 0 0 17165 143248.59375 0.15216190530882298 7 -0.20627593994140625 4 Unmodified _YPFIIDAHL_ ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10 117.59872219059416 0.0017018906413822257 2 YP{M(Oxidation (M))|F}{I|L}{I|L}DHA{I|L} 9 2 + 83.005 0 0 7.6321 7.6321 87.873 0 0 0 12.104093769761874 2.3860585694618663 2.3860585694618663 2.3860585694618663 0 2.2856668758921828 1.3979400086720375 0.535666875892183 0 YP{M(Oxidation (M))|F}{I|L}{I|L}DHA{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YYK{I|L}{I|L}{M(Oxidation (M))|F}GAN;YYK{I|L}{I|L}{M(Oxidation (M))|F}QN;YP{I|L}{M(Oxidation (M))|F}{I|L}DHA{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}{I|L}DAH{I|L};YP{I|L}{M(Oxidation (M))|F}{I|L}DAH{I|L};YP{M(Oxidation (M))|F}{I|L}{I|L}{[HG]|PP}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L};YYK{I|L}{M(Oxidation (M))|F}{I|L}GAN 7.6321;7.4127;6.5192;6.3622;6.342;6.1331;6.1226;5.7328;5.2467;5.2291 -;+;-;-;-;+;-;-;-;- + 1531 + NaN NaN 230932.9 NaN 13552 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17170 73.01 NaN 586180 35 0 32660 0.261 + 19967 NYGLRTFLF 9 88 565.8033702077354 1129.5921874822707 2 566.2874145507812 MULTI HCD FTMS 0 0 0 17165 92442.3671875 0.19318801565929122 -5 0.13414764404296875 5 Unmodified _NYGLRTFLF_ ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF 65.47368725323818 0.010552856507075443 2 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 94.425 0 0 8.3592 8.3592 91.495 0 0 0 9.164069721344447 9.164069721344447 9.164069721344447 8.57840941039747 0 2.8556270500406935 2 0 0.3807196863200844 + + [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]{I|L}GRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]NGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YQ]VGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]GGGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SVGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]QGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV][AG]GRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TA]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8.3592;7.5998;5.8128;5.0343;4.9977;4.9938;4.7312;3.916;3.8518;3.8373 +;-;-;-;-;-;-;-;-;- + 2439 NaN NaN 176395.2 NaN 13553 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17171 73.013 NaN 349840 35 0 36355 0.261 + 5086 FEFEGISYL 9 69 552.7679316436427 1103.5213103540852 2 552.7669067382812 MULTI HCD FTMS 0 0 0 17165 63296.76953125 0.6855705603224403 1 -0.032745361328125 6 Unmodified _FEFEGISYL_ REV__ENSG00000254685|ENST00000370898|FPGT;REV__nc|ENSG00000254685|O14772|FPGT 20.453626601364224 0.18364154288633264 2 {M(Oxidation (M))|F}C(Carbamidomethyl (C))TVY{I|L} 6 -1 45.482 0 0 4.1216 0 0 302.13743788886876 0 302.13743788886876 0 38.03518169636014 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {M(Oxidation (M))|F}C(Carbamidomethyl (C))TVY{I|L} 4.1216 - 191 NaN NaN 144381.8 NaN 13554 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17172 73.016 NaN 215760 35 0 25747 0.261 + 22284 QPDVVVVEL 9 57 499.2818096160929 996.5490662989858 2 499.2815856933594 MULTI HCD FTMS 0 0 0 17165 96583.7890625 0.9192405801955053 2 -0.062164306640625 7 Unmodified _QPDVVVVEL_ ENSG00000170638|ENST00000380909|TRABD;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD 31.26834338654808 0.10542797264966089 2 VVE{I|L} 4 5 43.532 0 0 4.3683 0 0 538.2735462873062 0 538.2735462873062 0 23.866231628152686 0 0 0 1.3494850021680094 0 0.3494850021680094 0 + VVE{I|L} 4.3683 + + 47 NaN NaN 118293.4 NaN 13555 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17173 73.019 NaN 319880 35 0 76685 0.261 -1 VISCVMIVL 9 59 525.2883984897427 NaN 0 525.2889404296875 PEAK HCD FTMS 0 0 0 17165 54192.421875 0.6726369083543691 -3 0.08182525634765625 8 Carbamidomethyl (C),Oxidation (M) _VISC(Carbamidomethyl (C))VM(Oxidation (M))IVL_ ENSG00000172464|ENST00000544374|OR5AP2 10.823927491677226 0.2427956001690155 2 V{I|L} 2 -1 8.7557 0 0 0.83502 0 0 131.08545068866653 702.2951754205686 833.3806261092352 0 0 0 0 0 0.3807196863200844 0 0 0 V{I|L} 0.83502 + + 24 + NaN NaN 135127 NaN 13556 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17174 73.023 NaN 94380 35 0 20337 0.262 -1 ENSSCGAF 8 35 436.1648352559348 NaN 0 436.2157287597656 PEAK HCD FTMS 0 0 0 17165 6229.966796875 0.5976082502812639 -1 0.01953887939453125 9 Carbamidomethyl (C) _ENSSC(Carbamidomethyl (C))GAF_ ENSG00000198569|ENST00000673835|SLC34A3 2.302733041254933 0.38822285293237185 2 {I|L} 1 -1 4.6041 0 0 0.52901 0 0 622.1628481468322 132.04560266666252 754.2084508134947 0 0 0 0 0 0 0 0 0 {I|L} 0.52901 - 1 + NaN NaN 110002.3 NaN 13557 3615 17165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17176 73.028 NaN 1961500 35 0 592980 0.327 + 23322 RISLPLPNF 9 85 528.8138131907656 1055.613073448331 2 528.8138427734375 MULTI HCD FTMS 0 0 0 17175 921916.125 0.7309543111992072 4 -0.111236572265625 1 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 75.5705956163825 0.007285660612518157 2 [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F} 9 0 + 80.064 0 0 7.5846 7.5846 91.333 0 0 0 2.7032416604256184 2.7032416604256184 2.7032416604256184 9.208187539523749 0 3.0189301784845295 0 0.7302046884880937 0 + + [R{I|L}]S{I|L}P{I|L}PN{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}PGG{M(Oxidation (M))|F};[R{I|L}]S{I|L}P{I|L}{M(Oxidation (M))|F}[NP];[QT]{M(Oxidation (M))|F}{I|L}[HV]{I|L}[KA];[{M(Oxidation (M))|F}T]Q{I|L}[HV]{I|L}[KA];[{M(Oxidation (M))|F}T][AG]{I|L}[HV]{I|L}[KA];[{I|L}P][DP][R{M(Oxidation (M))|F}]{I|L}[KA] 7.5846;6.7123;4.4756;2.8969;1.8766;0.60195;0.0065732 +;-;-;-;-;-;- + 440 NaN NaN 397611.7 NaN 13558 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17177 73.032 NaN 1490700 35 0 133330 0.261 + 4760 EYTRALFLL 9 96 563.3189332849996 1124.6233136367991 2 563.31982421875 MULTI HCD FTMS 0 0 0 17175 863035.375 0.41094770035855266 -4 0.11457061767578125 2 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 69.10491478415734 0.009377850133389008 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 10 4 + 58.074 0 0 5.1638 5.1638 83.686 0 0 0 9.115452045203952 20.8450780022129 9.115452045203952 2.5578094971178444 0 1.3252574989159953 1.0457574905606752 2.2302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DT{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}{I|L};[YE][RV][VS]{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV[VS]{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}][RD][VS]{M(Oxidation (M))|F}{I|L}{I|L};[YE]T{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE][RV]{I|L}[YG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DVV{I|L}[YG]{I|L}{I|L};[Y{I|L}][RD]{I|L}[YG]{I|L}{I|L} 5.1638;4.9364;4.4969;4.2124;3.9157;3.8046;3.4366;3.3901;3.0934;2.9823 -;-;-;-;-;-;+;-;-;- + 2471 NaN NaN 334056.8 NaN 13559 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17178 73.036 NaN 1546200 35 0 169820 0.261 -1 CRDPFFKML 9 89 615.2949336441557 NaN 0 615.313720703125 PEAK HCD FTMS 0 0 0 17175 188898.4375 0.6704112913243305 25 -0.6340713500976562 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RDPFFKM(Oxidation (M))L_ ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1;nc|ENSG00000107959|Q5JRX3-3|PITRM1 21.74664581756881 0.17567436591797916 2 {I|L}AGEV{[MG]|[TS]}Q 8 -1 43.325 0 0 3.5265 0 0 165.04183730719052 275.1398777379895 440.18171504518 0 0 0 0 0 0 0 0.8252574989159953 0.9947026752325154 {I|L}AGEV{[MG]|[TS]}Q 3.5265 - 3578 + NaN NaN 320274.3 NaN 13560 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17179 73.039 NaN 607270 35 0 86443 0.261 + 31847 VYMIRVYLL 9 91 593.3388200549566 1184.6630871767131 2 593.3389892578125 MULTI HCD FTMS 0 0 0 17175 113129.2734375 0.22377668165687145 11 -0.2952423095703125 4 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ ENSG00000157916|ENST00000605895|RER1 48.345845343767074 0.03388484103555672 2 [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L} 9 0 + 59.988 0 0 5.0637 5.0637 84.553 0 0 0 8.410765857634047 23.429089686793816 8.410765857634047 5.172203223519531 0 1.3667053245199625 1.2218487496163564 0 0 + + [YV]{M(Oxidation (M))|F}{I|L}RVY{I|L}{I|L};[YV]{M(Oxidation (M))|F}V[R{I|L}]Y{I|L}{I|L};[YV]{M(Oxidation (M))|F}{I|L}RV{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}VP{I|L}[HV]V{I|L};[YV]{M(Oxidation (M))|F}V[R{I|L}]{I|L}Y{I|L};[YV]{M(Oxidation (M))|F}{I|L}R[Y{I|L}]V{I|L};[YV]{I|L}[YR][{M(Oxidation (M))|F}V]{I|L}{I|L};[Y{I|L}][MT][R{I|L}]Y{I|L}{I|L};[YV]{I|L}[YR]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L};[Y{I|L}][MT]P{I|L}[HV]V{I|L} 5.0637;4.6271;4.0484;3.7218;3.6118;2.8683;2.0393;1.9958;1.3836;1.2707 +;-;-;-;-;-;-;-;-;- + 1864 NaN NaN 179901.2 NaN 13561 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17180 73.042 NaN 595600 35 0 49198 0.261 + 29475 TYVFICPVFF 10 91 618.3107847224283 1234.6070165116564 2 618.3074340820312 MULTI HCD FTMS 0 0 0 17175 93061.4609375 0.31749738792046484 7 -0.20098114013671875 5 Unmodified _TYVFICPVFF_ REV__ENSG00000181939|ENST00000642128|OR4C15 20.453626601364224 0.3197956946484955 2 [YT]{I|L}Q 4 -1 42.945 0 0 3.4785 0 0 0 726.3364854659419 726.3364854659419 27.979713815597282 0 0 0 0 0.6747425010840047 2 0 0 [YT]{I|L}Q 3.4785 - 240 + NaN NaN 182300.2 NaN 13562 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17181 73.046 NaN 229930 35 0 14313 0.261 + 33991 YLVNFKNVF 9 74 572.3134125207383 NaN 0 572.3265991210938 PEAK HCD FTMS 0 0 0 17175 12255.40625 0.6019238677729173 -2 0.05228424072265625 6 Unmodified _YLVNFKNVF_ REV__ENSG00000168090|ENST00000303904|COPS6 9.347437153973935 0.2499504662953367 2 TYC 3 -1 14.693 0 0 1.2859 0 0 159.06433249414096 613.4226778619749 772.4870103561159 0 0 0 0 0 0 0 0 0 TYC 1.2859 - 142 + NaN NaN 141413.6 NaN 13563 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17182 73.049 NaN 132370 35 0 21538 0.262 + 28289 TLRQCEVL 8 38 481.2612051510857 NaN 0 481.2607727050781 PEAK HCD FTMS 0 0 0 17175 69014.9921875 0.9212780790852628 -4 0.11457061767578125 7 Unmodified _TLRQCEVL_ ENSG00000152076|ENST00000409943|CCDC74B;ENSG00000163040|ENST00000409856|CCDC74A;ENST00000496704.1_1_2:130897130-130898075:-|nuORF;nc|ENSG00000152076|Q96LY2|CCDC74B;nc|ENSG00000163040|Q96AQ1|CCDC74A 6.723162845929126 0.38822285293237185 2 V 1 7 6.9897 0 0 0.72771 0 0 131.0970170561538 727.3212217943308 858.4182388504846 0 0 0 0 0 0 0 0 0 + V 0.72771 + + 2 + NaN NaN 125105.2 NaN 13564 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17183 73.052 NaN 134760 35 0 18235 0.261 + 14207 LASAALIGYP 10 42 488.27924105875076 974.5439291843015 2 488.2785339355469 MULTI HCD FTMS 0 0 0 17175 24183.28125 0.5892385247621862 3 -0.08837890625 8 Unmodified _LASAALIGYP_ REV__ENSG00000105173|ENST00000262643|CCNE1;REV__nc|ENSG00000105173|P24864-2|CCNE1;REV__nc|ENSG00000105173|P24864-3|CCNE1 6.723162845929126 0.4397169348982109 2 [WR]A 3 -1 19.705 0 0 2.022 0 0 0 558.2931828901187 558.2931828901187 19.7049999164468 0 0 0 0 0.9247425010840047 0 0 0 [WR]A 2.022 - 7 + NaN NaN 131865.1 NaN 13565 3616 17175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17185 73.057 NaN 11577000 35 0 2490000 0.327 + 24258 RYFLPPYTF 9 81 602.3135033827217 1202.6124538322433 2 602.3140869140625 MULTI HCD FTMS 0 0 0 17184 7568287.5 0.8644607725276396 1 -0.029510498046875 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 96.11092074494114 0.00436583732602279 2 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 78.695 0 0 6.5436 6.5436 92.252 0 0 0 7.632192780232785 44.55977185236079 7.632192780232785 18.935078169319297 0 2.1989700043360187 0 0.4247425010840047 0.2614393726401688 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]H{I|L}P{I|L}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[Y{M(Oxidation (M))|F}]R 6.5436;4.9691;4.3111;2.456;1.5216 +;-;-;-;- + 644 NaN NaN 619576.6 NaN 13566 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17186 73.062 NaN 1373900 35 0 136110 0.261 + 4761 EYTRALFLL 9 87 563.3189332849996 1124.6233136367991 2 563.319091796875 MULTI HCD FTMS 0 0 0 17184 937274.8125 0.4462979617734309 -3 0.08170318603515625 2 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 78.7280429016045 0.006263961847259105 2 {I|L}[C(Carbamidomethyl (C))S]{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 7 5 53.933 0 0 4.7956 0 0 260.152202821427 0 260.152202821427 0 5.647605565002479 0 0 0 1.3494850021680094 0 1.9247425010840047 0 {I|L}[C(Carbamidomethyl (C))S]{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 4.7956 - 1788 NaN NaN 302343.4 NaN 13567 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17187 73.065 NaN 541220 35 0 53997 0.261 + 19968 NYGLRTFLF 9 85 565.8033702077354 1129.5921874822707 2 565.803466796875 MULTI HCD FTMS 0 0 0 17184 352564.25 0.3802212079745088 -3 0.08170318603515625 3 Unmodified _NYGLRTFLF_ ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF 93.16586880292088 0.00444300900000894 2 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 110.12 0 0 9.7487 9.7487 96.381 0 0 0 18.1877917254659 16.478174818886373 16.478174818886373 16.19325543266271 0 3.0501648626366045 2 0 1.2786596949921218 + + [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]{I|L}GRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]G{I|L}R{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YN]{I|L}GR{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][QA]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[TA]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YG[VG]T{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]QGRT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9.7487;8.3152;7.5234;6.0898;5.3273;4.9237;4.9237;4.55;4.5122;3.4725 +;-;-;-;-;-;-;-;-;- + 1080 NaN NaN 175267.5 NaN 13568 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17188 73.068 NaN 297420 35 0 69023 0.261 -1 VIEDVQCPDIM 11 54 639.2909621146862 1276.5673712961723 2 639.3040771484375 MULTI HCD FTMS 0 0 0 17184 12262.9345703125 0.09512593376437058 5 -0.14411163330078125 4 Oxidation (M) _VIEDVQCPDIM(Oxidation (M))_ ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX;ZFX|p.H140Qfs*7|1|0.03|ENSG00000005889|chrX:24179542-24179543|-/AACGTCCTCA|frameshift_variant;ZFX|p.H140Tfs*4|1|0.03|ENSG00000005889|chrX:24179540-24179541|-/A|frameshift_variant 19.361941925380144 0.2883811769592959 2 D{I|L}{M(Oxidation (M))|F} 3 -1 34.253 0 0 2.6832 0 0 883.4034912310424 0 883.4034912310424 0 20.74031267727719 0 0 0 0 0 0.805462187404089 0 D{I|L}{M(Oxidation (M))|F} 2.6832 + + 41 NaN NaN 128377.3 NaN 13569 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17189 73.072 NaN 135990 35 0 18688 0.264 -1 VPMEDINL 8 44 473.73125633104536 945.4479597288907 2 473.7311706542969 MULTI HCD FTMS 0 0 0 17184 82797.8515625 0.1083379381695549 45 -1.16558837890625 5 Oxidation (M) _VPM(Oxidation (M))EDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 11.640296217721598 0.50814828952472 2 {I|L}N{I|L} 3 -1 31.198 0 0 3.2998 0 0 587.224937355659 0 587.224937355659 0 16.593793813122062 0 0 0 0.5 0 0 0 {I|L}N{I|L} 3.2998 + + 15 NaN NaN 126590.6 NaN 13570 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17190 73.075 NaN 315590 35 0 45838 0.261 + 30424 VLPEHLILV 9 71 516.8265226818407 1031.6384924304814 2 516.8262939453125 MULTI HCD FTMS 0 0 0 17184 65816.9296875 0.15577873585853935 -5 0.14398956298828125 6 Unmodified _VLPEHLILV_ ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192 23.1484247019978 0.1603590852062899 2 V{I|L}V{I|L} 4 6 38.928 0 0 3.7734 0 0 589.321092674025 0 589.321092674025 0 35.828956512079344 0 0 0 0.8494850021680094 0 0 0 V{I|L}V{I|L} 3.7734 - 59 NaN NaN 133979.6 NaN 13571 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17191 73.078 NaN 172050 35 0 9697.8 0.261 + 5457 FILPRIRLI 9 69 570.8846629459014 1139.7547729586026 2 570.8841552734375 MULTI HCD FTMS 0 0 0 17184 12112.5205078125 0.02586154158747028 15 -0.35909271240234375 7 Unmodified _FILPRIRLI_ REV__ENST00000383811.7_1_3:9975768-9975897:+|nuORF 5.230669730166228 0.3113646817964458 2 {I|L}R 2 -1 14.949 0 0 1.3116 0 0 0 867.5441988580686 867.5441988580686 1.219778296232688 0 0 0 0 0 0 0 0 {I|L}R 1.3116 + + 163 + NaN NaN 115882.5 NaN 13572 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17192 73.082 NaN 328480 35 0 50925 0.261 + 19664 NVMDVVVQF 9 57 525.7680204690957 1049.5214880049914 2 525.768310546875 MULTI HCD FTMS 0 0 0 17184 47987.87890625 0.27625225737202813 -12 0.35033416748046875 8 Unmodified _NVMDVVVQF_ ABHD16A|p.A330V|1|0.5|ENSG00000204427|chr6:31689673-31689673|G/A|missense_variant 8.745405648335112 0.2847203663274469 2 V{I|L} 2 8 23.271 0 0 2.2173 0 0 819.3565731820711 0 819.3565731820711 0 3.2660625688767198 0 0 0 0.3807196863200844 0 0 0 V{I|L} 2.2173 - 34 NaN NaN 155374.9 NaN 13573 3617 17184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17194 73.087 NaN 1475400 35 0 134500 0.327 + 22897 QYPVIIHLI 9 94 548.3320846913067 1094.6496164494133 2 548.33203125 MULTI HCD FTMS 0 0 0 17193 718865.875 1 0 0 1 Unmodified _QYPVIIHLI_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 49.66892048692302 0.03203394951741629 2 [YQ]PV{I|L}{I|L}H{I|L}{I|L} 9 0 + 48.427 0 0 4.4239 4.4239 90.63 0 0 0 16.822581265925436 2.632192780232785 2.632192780232785 47.668344045268746 0 0.7614393726401688 1.3979400086720375 0 0 + + [YQ]PV{I|L}{I|L}H{I|L}{I|L};[H{I|L}]{I|L}{I|L}[VP]{I|L}[YQ] 4.4239;0.069264 +;- + 650 + NaN NaN 312843.2 NaN 13574 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17195 73.091 NaN 639220 35 0 90522 0.261 + 30874 VQPRNWLLF 9 71 586.8323109501486 1171.650068967097 2 586.832763671875 MULTI HCD FTMS 0 0 0 17193 349013 0.10433668702999792 13 -0.3168792724609375 2 Unmodified _VQPRNWLLF_ ENSG00000060762|ENST00000360961|MPC1 39.957323273324995 0.06554068735427583 2 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 44.917 0 0 3.8337 3.8337 81.073 0 0 0 8.586127766899025 22.240918700215886 8.586127766899025 0.6694678963061307 0 1.305462187404089 0 0 0.7302046884880937 {[QV]|[N{I|L}]|[RA]|[KV]}W[RP]N{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]{I|L}QV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}QV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]GG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]WGG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}W[RP]{I|L}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[RP]W{I|L}GG{I|L}{M(Oxidation (M))|F} 3.8337;3.7765;3.7232;3.6661;3.1875;3.1304;3.0477;2.9906;2.9373;2.8802 -;-;-;-;-;-;-;-;-;- 259 NaN NaN 183199 NaN 13575 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17196 73.095 NaN 1397100 35 0 101780 0.261 + 29529 TYVYFTNEL 9 105 575.2779112618028 NaN 0 575.277099609375 PEAK HCD FTMS 0 0 0 17193 430107.28125 0.05961490356368007 -7 0.19968414306640625 3 Unmodified _TYVYFTNEL_ ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10 216.56568483796636 2.1212319319292695E-47 2 NT{M(Oxidation (M))|F}YV 5 8 73.276 0 0 6.3799 0 0 260.13707167793126 261.0903926224731 521.2274643004043 0 0 0 0 0 2.774227503252014 0 1.2971062485323517 1.5 NT{M(Oxidation (M))|F}YV 6.3799 - 2407 NaN NaN 313021.8 NaN 13576 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17197 73.098 NaN 635470 35 0 105330 0.261 + 27239 SYNPLWLRI 9 82 581.3242008687558 1160.6338488043116 2 581.3250122070312 MULTI HCD FTMS 0 0 0 17193 158819.453125 0.030738208850610182 22 -0.5522918701171875 4 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 47.594388314883695 0.03493607795751234 2 {[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]W{I|L}R{I|L} 9 0 {[{M(Oxidation (M))|F}C]|[YS]} + + 26.928 7.9711 3.1872 2.3201 2.3201 59.829 0 0 0 0 17.70258526534029 0 0 0 1.872363747448347 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}N[{I|L}P]W{I|L}R{I|L} 2.3201 + + 695 + NaN NaN 183772.9 NaN 13577 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17198 73.101 NaN 316480 35 0 63424 0.261 + 29214 TYLDNGVVF 9 50 514.258162765058 1026.501772596916 2 514.2583618164062 MULTI HCD FTMS 0 0 0 17193 182749.140625 1 0 0 5 Unmodified _TYLDNGVVF_ ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF 47.748688679222035 0.03472022231463587 2 RV{M(Oxidation (M))|F} 3 7 42.747 0 0 4.1644 0 0 606.2689686505875 0 606.2689686505875 0 26.293709283484077 0 0 0 1.305462187404089 0 0 0.8494850021680094 RV{M(Oxidation (M))|F} 4.1644 - 95 NaN NaN 138421 NaN 13578 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17199 73.105 NaN 465900 35 0 43762 0.261 + 19081 NEPYIFKVF 9 80 578.8052213806459 1155.5958898280917 2 578.8052978515625 MULTI HCD FTMS 0 0 0 17193 80546.84375 0.8122156653222693 2 -0.05230712890625 6 Unmodified _NEPYIFKVF_ ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 40.23920728925047 0.06424668180817725 2 MKV{M(Oxidation (M))|F} 4 6 22.498 0 0 1.9469 0 0 632.3177530542404 0 632.3177530542404 0 0.5031220908418277 0 0 0 0.6747425010840047 0 0 0 MKV{M(Oxidation (M))|F} 1.9469 - 240 NaN NaN 156596.6 NaN 13579 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17200 73.108 NaN 502300 35 0 73594 0.261 + 1499 AYTTVLQEW 9 91 555.7779119041904 1109.5412708751808 2 555.7766723632812 MULTI HCD FTMS 0 0 0 17193 75051.171875 1 0 0 7 Unmodified _AYTTVLQEW_ ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;nc|ENSG00000197256|Q63ZY3-3|KANK2 76.82478488871298 0.006879825292024087 2 [{M(Oxidation (M))|F}T]STV{I|L}QEW 9 3 + 61.507 0 0 5.5435 5.5435 86.096 0 0 0 2.6836925634318476 33.85029351276792 2.6836925634318476 7.129843661361406 0 2.4291746928241125 0 1.4361818737241734 0 [{M(Oxidation (M))|F}T]STV{I|L}QEW;{[CT]|[{M(Oxidation (M))|F}G]}EQ{I|L}VTM[VS];{[CT]|[{M(Oxidation (M))|F}G]}EQ{I|L}VT{[VA]|[{I|L}G]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]STV{I|L}[AG]EW;{[CT]|[{M(Oxidation (M))|F}G]}APY{I|L}QE[VS];[{M(Oxidation (M))|F}T]{[WT]|[RM]}{I|L}QE[VS];{[CT]|[{M(Oxidation (M))|F}G]}E[AG]{I|L}VTM[VS];{[CT]|[{M(Oxidation (M))|F}G]}E[AG]{I|L}VT{[VA]|[{I|L}G]}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}EQ{I|L}[{I|L}A]{M(Oxidation (M))|F}[VS];{[CT]|[{M(Oxidation (M))|F}G]}EQ{I|L}[{I|L}A][VS]{M(Oxidation (M))|F} 5.5435;4.9009;4.8497;4.7135;4.2403;4.1731;3.8496;3.7984;3.7812;3.73 -;-;-;-;-;-;-;-;-;- 2852 NaN NaN 180313.2 NaN 13580 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17201 73.111 NaN 274640 35 0 59590 0.261 -1 FFSECSLGYF 10 57 628.769609646879 1255.5246663605578 2 628.770751953125 MULTI HCD FTMS 0 0 0 17193 43523.23046875 0.5232395151309547 -2 0.058929443359375 8 Carbamidomethyl (C) _FFSEC(Carbamidomethyl (C))SLGYF_ ENSG00000133858|ENST00000378743|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1;ZFC3H1|p.P578Hfs*4|1|0.11|ENSG00000133858|chr12:71637052-71637053|-/GT|frameshift_variant;ZFC3H1|p.P578Kfs*5|1|0.1|ENSG00000133858|chr12:71637054-71637055|-/TCTTG|frameshift_variant 1.6526216038709556 0.46655611578153744 2 W 1 -1 2.2185 0 0 0.1767 0 0 833.847891313486 232.57241235904533 1066.4203036725314 0 0 0 0 0 0 0 0 0 W 0.1767 - 6 + NaN NaN 135086 NaN 13581 3618 17193 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17203 73.116 NaN 560610 35 0 108370 0.327 + 25149 SAIHILDVL 9 72 490.7924666045579 979.5703802759158 2 490.7924499511719 MULTI HCD FTMS 0 0 0 17202 338247.75 0.5472413372596374 3 -0.08515167236328125 1 Unmodified _SAIHILDVL_ ENSG00000137200|ENST00000373451|CMTR1 74.92900055777586 0.007493270374442853 2 {[SA]|[TG]}{I|L}H{I|L}{I|L}DV{I|L} 9 0 + 54.773 0 0 5.5915 5.5915 90.105 0 0 0 3.5873530347330274 29.711309630365577 3.5873530347330274 15.454940995189965 0 1.8182503180159344 0 0.6747425010840047 0 + + {[SA]|[TG]}{I|L}H{I|L}{I|L}DV{I|L};[DV]{I|L}[{I|L}A][HT]V{I|L};[DV]{I|L}[{I|L}A][HS]{I|L}{I|L};{[SA]|[TG]}{I|L}H{I|L}[DV]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[{I|L}A][HT]V{I|L};{[SA]|[TG]}{I|L}H[DV]{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[{I|L}A][HS]{I|L}{I|L} 5.5915;4.0138;2.864;2.4013;2.1519;1.5822;1.0021 +;-;-;-;-;-;- + 145 NaN NaN 174659.7 NaN 13582 3619 17202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17204 73.12 NaN 798820 35 0 114660 0.261 + 34912 YSINEDLVF 9 85 550.269003176249 1098.523453419298 2 550.2691650390625 MULTI HCD FTMS 0 0 0 17202 286867.1875 0.42669064504088766 3 -0.08515167236328125 2 Unmodified _YSINEDLVF_ ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 32.30548876998284 0.10066689432505688 2 {I|L}V{M(Oxidation (M))|F} 3 6 35.445 0 0 3.2266 0 0 721.2918993194918 0 721.2918993194918 0 4.9953678497787735 0 0 0 1.274227503252014 0 0 0 + {I|L}V{M(Oxidation (M))|F} 3.2266 + + 238 + NaN NaN 209163.7 NaN 13583 3619 17202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17205 73.124 NaN 956180 35 0 94246 0.261 + 6161 FPEHIFPAL 9 79 535.7874179887401 1069.5602830442801 2 535.7872314453125 MULTI HCD FTMS 0 0 0 17202 199157 0.012441039106030784 47 -1.2169647216796875 3 Unmodified _FPEHIFPAL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 48.345845343767074 0.03388484103555672 2 P{M(Oxidation (M))|F}MT{I|L}{I|L}{M(Oxidation (M))|F} 7 7 41.235 0 0 3.8553 0 0 202.13099867988439 0 202.13099867988439 0 29.55214169069926 0 0 0 1.805462187404089 0 0 0 P{M(Oxidation (M))|F}MT{I|L}{I|L}{M(Oxidation (M))|F} 3.8553 - 605 NaN NaN 239029.8 NaN 13584 3619 17202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17206 73.127 NaN 387160 35 0 54937 0.261 -1 NYAWVNRSSM 10 70 622.2803420763577 NaN 0 622.2949829101562 PEAK HCD FTMS 0 0 0 17202 17796.171875 0.4506462518618578 -1 0.029449462890625 4 Oxidation (M) _NYAWVNRSSM(Oxidation (M))_ ENSG00000100220|ENST00000216038|RTCB 17.11289562659939 0.30402175129113823 2 C{I|L}S 3 -1 20.247 0 0 1.6295 0 0 62.03345778771547 874.3778780572874 936.4113358450029 0 0 0 0 0 0 0 0.7059771852360797 0 C{I|L}S 1.6295 - 190 + NaN NaN 148796.1 NaN 13585 3619 17202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17207 73.131 NaN 207610 35 0 31734 0.263 + -1 CILMMIVI 8 48 496.7702433643494 991.5259337954989 2 496.77032470703125 MULTI HCD FTMS 0 0 0 17202 39340.234375 0.1420636161073235 -11 0.3175201416015625 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILMMIVI_ REV__ENSG00000196876|ENST00000627620|SCN8A;REV__nc|ENSG00000196876|Q9UQD0-3|SCN8A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000196876|Q9UQD0|SCN8A 17.086550045450526 0.4680768486079041 2 P[WY]V{I|L} 5 -1 37.218 0 0 3.7537 0 0 315.1577320783219 0 315.1577320783219 0 23.723637474483468 0 0 0 1.5 0 0 0 P[WY]V{I|L} 3.7537 - 47 NaN NaN 145069.7 NaN 13586 3619 17202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17208 73.134 NaN 283490 35 0 21358 0.261 + 34617 YPPTSPVQMQT 11 76 624.8008422851562 NaN 0 624.8008422851562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YPPTSPVQMQT_ ENST00000530275.2_1_1:39875146-39875419:+|nuORF 10.073929032068715 0.31354330794393104 2 STP 3 9 12.738 0 0 1.0235 0 0 699.3212402326186 257.09287439517817 956.4141146277968 0 0 0 0 0 0 0 0.3252574989159953 0 STP 1.0235 - 134 + NaN NaN 129523.7 NaN 13587 3619 17202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17210 73.139 NaN 6062500 35 0 582010 0.327 + 3759 ENRQFEQIS 9 128 575.7789830697235 1149.543413206247 2 575.7926025390625 MULTI HCD FTMS 0 0 0 17209 1441982 1 0 0 1 Unmodified _ENRQFEQIS_ REV__ENSG00000061987|ENST00000393630|MON2;REV__ENST00000547095.5_1_12:62864501-62986526:+|nuORF;REV__ENST00000551307.5_1_12:62954224-62986526:+|nuORF;REV__nc|ENSG00000061987|Q7Z3U7-2|MON2;REV__nc|ENSG00000061987|Q7Z3U7-3|MON2;REV__nc|ENSG00000061987|Q7Z3U7-5|MON2;REV__nc|ENSG00000061987|Q7Z3U7-6|MON2 29.081581746732265 0.1154664336125038 2 [YT]VY{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F} 9 -1 + 62.672 0 0 5.4519 5.4519 85.185 0 0 0 8.98645900781058 3.8699009539678215 3.8699009539678215 5.22982286820173 0 0 1.154901959985743 1.7354457052935717 0 [YT]VY{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};[YT]VY{M(Oxidation (M))|F}TNRS;{I|L}YVT{M(Oxidation (M))|F}Y{I|L}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TP{I|L}{M(Oxidation (M))|F};[YT]VY{M(Oxidation (M))|F}TGGRS;[YT]VYT{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};{I|L}YVT{M(Oxidation (M))|F}YVV{M(Oxidation (M))|F};[YT]VYE{I|L}{I|L}C{M(Oxidation (M))|F};[YT]VYE{I|L}C{I|L}{M(Oxidation (M))|F};[YT]VY{I|L}CE{I|L}{M(Oxidation (M))|F} 5.4519;4.997;4.6702;4.3386;4.1959;4.1819;4.1737;4.0629;3.899;3.8966 -;-;-;-;-;-;-;-;-;- 20982 NaN NaN 1011470.7 NaN 13588 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17211 73.143 NaN 1361000 35 0 478250 0.264 -1 0 74 413.19354773523565 824.3725425372713 2 413.1934814453125 MULTI HCD FTMS 0 0 0 17209 1011309.5625 0.8727073768770328 10 -0.23854827880859375 2 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 9.732 0 0 1.1805 0 0 238.05199917965257 423.27193651069416 661.3239356903467 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 1.1805 - 21 + NaN NaN 305602.8 NaN 13589 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17212 73.147 NaN 472310 35 0 62794 0.261 + 6583 FPLDLDVKM 9 83 539.2862077323906 1076.5578625315811 2 539.2863159179688 MULTI HCD FTMS 0 0 0 17209 373048.875 0.691676552397774 -2 0.05230712890625 3 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 90.13494162714682 0.004522430935000059 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM 9 0 + 82.041 0 0 7.6207 7.6207 92.361 0 0 0 8.314695960392129 52.411604361839615 8.314695960392129 9.877203139966326 0 2.6549471895720984 1.5228787452803376 0.75 0.2742275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}DVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}DVKM;[{I|L}P]D{M(Oxidation (M))|F}{I|L}DVKM;[{I|L}P]D{I|L}{M(Oxidation (M))|F}DVKM;[{I|L}P]D{I|L}D{M(Oxidation (M))|F}VKM;{M(Oxidation (M))|F}P{I|L}D{I|L}Q{I|L}TM;{[WS]|[C(Carbamidomethyl (C)){I|L}]}RRDVKM;{M(Oxidation (M))|F}P{I|L}D{I|L}[AG]{I|L}TM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}E{I|L}[KC];[{I|L}P]D{I|L}DV{M(Oxidation (M))|F}KM 7.6207;6.7032;6.1599;5.2523;5.0846;4.939;4.688;4.0836;3.815;3.6688 +;+;-;-;-;-;-;-;-;- + 616 NaN NaN 170467.5 NaN 13590 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17213 73.15 NaN 664320 35 0 120400 0.261 -1 FPANVMDVI 9 77 511.25480385671625 1020.4950547802325 2 511.25482177734375 MULTI HCD FTMS 0 0 0 17209 309452.53125 0.4351774815601291 18 -0.45090484619140625 4 Oxidation (M) _FPANVM(Oxidation (M))DVI_ ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF 18.1463463914782 0.20357593197100715 2 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DV{I|L} 6 -1 33.365 0 0 3.2695 0 0 218.12632949043126 0 218.12632949043126 0 11.824258829622991 0 0 0 0.3494850021680094 0 0.3494850021680094 0 {M(Oxidation (M))|F}Y{M(Oxidation (M))|F}DV{I|L} 3.2695 - 355 NaN NaN 191944.8 NaN 13591 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17214 73.154 NaN 1123100 35 0 131010 0.261 + 26979 SYLPAFKVF 9 80 536.2980957740128 1070.5816386148256 2 536.29833984375 MULTI HCD FTMS 0 0 0 17209 274774.8125 1 0 0 5 Unmodified _SYLPAFKVF_ ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1 62.57269311338072 0.013982455292112035 2 P{M(Oxidation (M))|F}[MT]KV{M(Oxidation (M))|F} 7 6 43.113 0 0 4.0271 0 0 202.13142592597814 0 202.13142592597814 0 10.540433801818793 0 0 0 1.1861818737241734 0 0.6382104921644451 0.3054621874040891 P{M(Oxidation (M))|F}[MT]KV{M(Oxidation (M))|F} 4.0271 - 402 NaN NaN 263363.8 NaN 13592 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17215 73.157 NaN 292320 35 0 53262 0.261 + 19410 NPHTSTMALVF 11 60 609.3028799882109 1216.5912070432216 2 609.3028564453125 MULTI HCD FTMS 0 0 0 17209 100477.34375 0.5153685299131818 5 -0.132049560546875 6 Unmodified _NPHTSTMALVF_ ENSG00000184408|ENST00000331113|KCND2 8.155526934196011 0.3831532958467648 2 T{M(Oxidation (M))|F} 2 9 29.776 0 0 2.4475 0 0 950.466570334086 0 950.466570334086 0 22.302046884880937 0 0 0 0.5 0 0.3807196863200844 0 + T{M(Oxidation (M))|F} 2.4475 + + 25 NaN NaN 141043.3 NaN 13593 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17216 73.16 NaN 193620 35 0 18227 0.264 + 28804 TTSMHSGS 8 51 404.1696931571729 806.3248333811458 2 404.1700744628906 MULTI HCD FTMS 0 0 0 17209 229779.625 0.027440898015541428 43 -1.1189804077148438 7 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 11.109 0 0 1.3778 0 0 641.2468589932537 0 641.2468589932537 0 11.10924374808178 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3778 + + 5 + NaN NaN 116515.3 NaN 13594 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17217 73.164 NaN 294730 35 0 53078 0.261 + 8408 GYPLWKVTF 9 63 555.8025935526008 1109.5906341720015 2 555.802978515625 MULTI HCD FTMS 0 0 0 17209 56376.55859375 0.016810785738630596 37 -0.9640960693359375 8 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 18.373094154950223 0.20161688160436167 2 [YG]{I|L}Q{I|L}{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 9 6 + 52.132 0 0 4.6983 4.6983 86.488 0 0 0 27.581108853049372 12.702264589233394 12.702264589233394 9.208187539523749 0 0 1.5228787452803376 0.7059771852360797 0 [YG]{I|L}Q{I|L}{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YG]{I|L}[AG]{I|L}{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{M(Oxidation (M))|F}{I|L}QAP{M(Oxidation (M))|F};[YG]P{I|L}[YK]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YG][K{I|L}]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{M(Oxidation (M))|F};[YG]{I|L}P[YK]{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{M(Oxidation (M))|F}{I|L}[AG]AP{M(Oxidation (M))|F};[{I|L}A][YN]{I|L}{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}EG[R{I|L}]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}E{I|L}{[NV]|[RG]}T{M(Oxidation (M))|F} 4.6983;3.8684;2.9356;2.6871;2.656;2.3722;2.1057;1.9072;1.7376;1.3789 -;-;-;-;-;-;-;-;-;- 528 + NaN NaN 137843.4 NaN 13595 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17218 73.167 NaN 244810 35 0 24889 0.261 + 11382 IYNTDEVSF 9 68 544.250911897291 1086.4872708613818 2 544.2506103515625 MULTI HCD FTMS 0 0 0 17209 56230.0703125 0.586323857371139 4 -0.1190643310546875 9 Unmodified _IYNTDEVSF_ ENSG00000102893|ENST00000323584|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;nc|ENSG00000102893|Q93100-4|PHKB 14.838274106304384 0.23215694253501695 2 YY[K{I|L}]{I|L}{M(Oxidation (M))|F}G 7 8 33.645 0 0 3.0967 0 0 0 198.98853185977364 198.98853185977364 12.407585181787084 0 0 0 0 0 2 0 0.3054621874040891 YY[K{I|L}]{I|L}{M(Oxidation (M))|F}G 3.0967 - 79 NaN NaN 128622.7 NaN 13596 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17219 73.17 NaN 170890 35 0 11323 0.261 + 13288 KYMDINFDF 9 60 596.7711176425278 1191.5276823518554 2 596.7717895507812 MULTI HCD FTMS 0 0 0 17209 43656.3515625 0.013280701411816082 48 -1.2498550415039062 10 Unmodified _KYMDINFDF_ ENSG00000136286|ENST00000258787|MYO1G;ENSG00000176658|ENST00000318217|MYO1D;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-2|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G 22.65808497894818 0.16459551161911185 2 N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 5 43.928 0 0 3.6867 0 0 650.3098011701187 0 650.3098011701187 0 30.11561899423569 0 0 0 1.1989700043360187 0 0 0 + N{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.6867 + + 65 NaN NaN 127098.9 NaN 13597 3620 17209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17221 73.175 NaN 562590 35 0 159370 0.327 + 23323 RISLPLPNF 9 48 528.8138131907656 1055.613073448331 2 528.8138427734375 MULTI HCD FTMS 0 0 0 17220 212822.6875 0.16873949454905848 9 -0.202392578125 1 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 40.23920728925047 0.06424668180817725 2 {I|L}[{I|L}P]PN{M(Oxidation (M))|F} 6 3 45.74 0 0 4.3331 0 0 356.21714980293126 0 356.21714980293126 0 38.29308182573026 0 0 0 2.1549471895720984 0 0 0 + {I|L}[{I|L}P]PN{M(Oxidation (M))|F} 4.3331 + + 84 NaN NaN 175561 NaN 13598 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17222 73.179 NaN 671900 35 0 50511 0.261 + 3382 EESFFILKY 9 92 588.3022833329046 1174.5900137326091 2 588.3029174804688 MULTI HCD FTMS 0 0 0 17220 300887.625 0.8043601373904421 1 -0.0261383056640625 2 Unmodified _EESFFILKY_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 78.7280429016045 0.006263961847259105 2 EES{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}KY 9 0 + 64.575 0 0 5.4977 5.4977 89.427 0 0 0 24.775071725447404 16.478174818886373 16.478174818886373 12.972287753157516 0 1.5 0 0 0.2742275032520141 + + EES{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}KY;{NN|[MP]|[D{I|L}]|[EV]}[YT]{M(Oxidation (M))|F}{I|L}{I|L}KY 5.4977;4.3933 +;- + 368 + NaN NaN 197188.2 NaN 13599 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17223 73.183 NaN 95213 35 0 8645.7 0.264 + 2174 DICSICQAEFQ 11 51 419.5149282910945 NaN 0 419.5150451660156 PEAK HCD FTMS 0 0 0 17220 29152.333984375 0.20096090472990447 1 -0.0261383056640625 3 Unmodified _DICSICQAEFQ_ ENSG00000189050|ENST00000305783|RNFT1;ENST00000486103.6_1_17:58031378-58035783:-|nuORF 1.3295316138638542 0.3383486451652214 2 {I|L} 1 10 5.5065 0 0 0.65787 0 0 418.8551911995734 302.0538729303344 720.9090641299078 0 0 0 0 0 0.2742275032520141 0 0 0 + {I|L} 0.65787 + + 1 + NaN NaN 99256 NaN 13600 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17224 73.186 NaN 286470 35 0 43576 0.261 + 31438 VYAVVRGLFL 10 63 568.8455935650918 1135.6766341969835 2 568.8447875976562 MULTI HCD FTMS 0 0 0 17220 91608.546875 0.2342306195681616 -4 0.11797332763671875 4 Unmodified _VYAVVRGLFL_ ENSG00000138111|ENST00000238936|MFSD13A 68.08070601005525 0.01985953044443068 2 [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 10 0 + 76.833 0 0 6.7654 6.7654 91.261 0 0 0 11.365006360318688 11.365006360318688 11.365006360318688 11.989700043360187 0 2.6989700043360187 1.5228787452803376 0 0 + + [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L};[YV]AVVR{[MS]|[{M(Oxidation (M))|F}A]}V{I|L} 6.7654;5.7096 +;- + 197 NaN NaN 144404.2 NaN 13601 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17225 73.19 NaN 216890 35 0 32578 0.261 + 26232 SPVWQDQIL 9 43 543.2846980146749 1084.5548430961496 2 543.2841186523438 MULTI HCD FTMS 0 0 0 17220 114626.78125 0.6077506723385867 -2 0.05901336669921875 5 Unmodified _SPVWQDQIL_ ENSG00000188419|ENST00000357749|CHM;ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM 23.789781309258295 0.1548179064208189 2 WQWG{I|L}{I|L} 6 5 50.851 0 0 4.6887 0 0 283.15242201972814 0 283.15242201972814 0 47.7524439246897 0 0 0 1.305462187404089 0 0 0.3807196863200844 WQWG{I|L}{I|L} 4.6887 - 32 NaN NaN 139822.8 NaN 13602 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17226 73.193 NaN 206630 35 0 42828 0.261 + 10594 IPMPDFDL 8 53 482.22839774599265 962.4422425587853 2 482.2283630371094 MULTI HCD FTMS 0 0 0 17220 66722.8046875 0.5060541492437202 -4 0.11797332763671875 6 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 44.40701690623563 0.17431628565839993 2 {M(Oxidation (M))|F}D{I|L} 3 5 35.688 0 0 3.708 0 0 569.2509632794937 0 569.2509632794937 0 35.687587626244124 0 0 0 0.6747425010840047 0 0.4247425010840047 0 + {M(Oxidation (M))|F}D{I|L} 3.708 + + 29 NaN NaN 126379.1 NaN 13603 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17227 73.196 NaN 525170 35 0 59453 0.261 -1 YVMSFAFCF 9 71 594.2503774554999 1186.4862019777997 2 594.2514038085938 MULTI HCD FTMS 0 0 0 17220 91521.1953125 0.6592975672196085 -7 0.199676513671875 7 Carbamidomethyl (C),Oxidation (M) _YVM(Oxidation (M))SFAFC(Carbamidomethyl (C))F_ ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4 5.230669730166228 0.3113646817964458 2 {I|L} 1 -1 5.4846 0 0 0.46225 0 0 131.91277403058126 938.4657076471311 1070.3784816777124 0 0 0 0 0 0 0 0 0 {I|L} 0.46225 - 86 + NaN NaN 167084.6 NaN 13604 3621 17220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17229 73.201 NaN 8757800 35 0 1267400 0.326 + 11637 IYVHDLLTF 9 116 560.8056711153281 1119.596789297456 2 560.80615234375 MULTI HCD FTMS 0 0 0 17228 8920599 1 0 0 1 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 225.63253280303684 3.884279688775432E-24 2 {I|L}YVHD{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 125.59 0 0 11.218 11.218 97.487 0 0 0 63.557992161524496 16.478174818886373 16.478174818886373 20.41595172051545 0 3.2614393726401687 1.6989700043360187 2.8979400086720375 0 + + {I|L}YVHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{I|L}{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{M(Oxidation (M))|F}{I|L};{I|L}D{[NV]|[RG]}W{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHDVVY{I|L};[Y{I|L}]VV{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};{I|L}[QA]EW{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VVDHVY{I|L} 11.218;9.3942;8.3776;7.5733;7.2582;7.1067;7.0673;6.3417;6.164;6.1401 +;+;-;-;-;-;-;-;-;- + 6905 + NaN NaN 809224.3 NaN 13605 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17230 73.206 NaN 11822000 35 0 2229700 0.181 + 24259 RYFLPPYTF 9 97 602.3135033827217 1202.6124538322433 2 602.3139038085938 MULTI HCD FTMS 0 0 0 17228 5160491 0.5894387649097542 6 -0.1310882568359375 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 85.64151623876279 0.004640175941193596 2 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 82.357 0 0 6.8481 6.8481 93.115 0 0 0 7.147642715192504 54.916440611282624 7.147642715192504 22.501225267834002 0 2.3494850021680094 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][H{I|L}]P{I|L}{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F};VVMH{I|L}P[H{I|L}]EE;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PT{M(Oxidation (M))|F}{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F}P{I|L}[YR]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KA][WK]YT{M(Oxidation (M))|F} 6.8481;4.9771;4.9219;2.4214;2.2863;2.2772;2.249;2.1854;1.4643 +;-;-;-;-;-;-;-;- + 804 NaN NaN 940578.9 NaN 13606 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17231 73.208 NaN 4979400 35 0 535910 0.222 + -1 AEQFIGTAVMF 11 118 615.2949336441557 NaN 0 615.3138427734375 PEAK HCD FTMS 0 0 0 17228 97116.21875 0.3446709802494987 31 -0.7808151245117188 3 Oxidation (M) _AEQFIGTAVM(Oxidation (M))F_ REV__ENST00000481948.1_1_16:88104968-88110264:+|nuORF 23.789781309258295 0.2270700001490706 2 {I|L}AG{M(Oxidation (M))|F}SEA{I|L} 8 -1 47.9 0 0 3.8988 0 0 165.04161139305626 272.10395201691784 437.1455634099741 0 0 0 0 0 0 0 1.1549471895720984 0 {I|L}AG{M(Oxidation (M))|F}SEA{I|L} 3.8988 - 8368 + NaN NaN 656327.7 NaN 13607 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17232 73.21 NaN 2508700 35 0 245070 0.261 + 4762 EYTRALFLL 9 107 563.3189332849996 1124.6233136367991 2 563.3189086914062 MULTI HCD FTMS 0 0 0 17228 1021994.0625 0.486638348705544 2 -0.05677032470703125 4 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 85.64151623876279 0.004640175941193596 2 [YE]TRA{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 72.352 0 0 6.4334 6.4334 90.839 0 0 0 12.468961563093906 14.97302484056646 12.468961563093906 12.468961563093906 0 2.353917193908117 1.0457574905606752 2.3494850021680094 0 + + [YE]TRA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YT]ERA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE]TRA{I|L}{I|L}{M(Oxidation (M))|F}{I|L};[YT]REA{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[YE]TRA{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[YE][RV][VS]{M(Oxidation (M))|F}{I|L}{I|L};[YT]ERA{I|L}{I|L}{M(Oxidation (M))|F}{I|L};[Y{I|L}][RD][VS]{M(Oxidation (M))|F}{I|L}{I|L};[YT]REA{I|L}{I|L}{M(Oxidation (M))|F}{I|L};[YT]R[{I|L}A]E{M(Oxidation (M))|F}{I|L}{I|L} 6.4334;5.3247;4.9227;4.5956;4.1741;4.0381;3.814;3.4843;3.0849;2.9044 +;-;-;-;-;-;-;-;-;- + 1691 NaN NaN 478820 NaN 13608 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17233 73.214 NaN 1226500 35 0 120640 0.261 + 19969 NYGLRTFLF 9 118 565.8033702077354 1129.5921874822707 2 565.8033447265625 MULTI HCD FTMS 0 0 0 17228 561547.5625 0.605598249252132 2 -0.05677032470703125 5 Unmodified _NYGLRTFLF_ ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF 103.41943736471063 0.004016698775839292 2 [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 114.8 0 0 10.163 10.163 97.772 0 0 0 16.45947776254218 16.45947776254218 16.45947776254218 27.021759648878486 0 3.1307196863200843 2 0.25 1.2396518287104437 + + [YN]G{I|L}RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YN]G{I|L}R{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F};[YN]G{I|L}RVVY{M(Oxidation (M))|F};[Y{I|L}][NG]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][QA]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[YG]RT{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[YG][VG]T{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[QP]TR{I|L}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}NG{I|L}R{I|L}G{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}][NG]R{I|L}[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F} 10.163;7.7706;7.4791;5.9271;5.2825;5.0565;4.2413;4.1663;3.6316;3.535 +;-;-;-;-;-;-;-;-;- + 4466 NaN NaN 287407.8 NaN 13609 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17234 73.217 NaN 2251400 35 0 273190 0.261 + 29535 TYVYMCHVGV 10 119 586.2675906843824 1170.5206284355647 2 586.267822265625 MULTI HCD FTMS 0 0 0 17228 398098.0625 0.5101381398592292 -8 0.2258148193359375 6 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 34.10243960390752 0.1965851268881605 2 TYVY{M(Oxidation (M))|F}TN 7 5 86.441 0 0 7.3848 0 0 0 279.09589563541255 279.09589563541255 56.42922654439268 0 0 0 0 2.2614393726401687 2 0.566901560044258 0.28872548999643577 TYVY{M(Oxidation (M))|F}TN 7.3848 - 4009 + NaN NaN 437169.2 NaN 13610 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17235 73.22 NaN 618170 35 0 46484 0.261 -1 PYMANVYLI 9 68 550.2788794917594 1098.5432060503188 2 550.2803955078125 MULTI HCD FTMS 0 0 0 17228 210180.890625 0.7989809049913406 -3 0.08515167236328125 7 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 36.04419817259434 0.08350412372117409 2 [{M(Oxidation (M))|F}V]D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L} 9 -1 + 52.655 0 0 4.7932 4.7932 89.59 0 0 0 5.6424927368725974 32.08220305641312 5.6424927368725974 21.026909627198403 0 1.25 0 0 0.7302046884880937 [{M(Oxidation (M))|F}V]D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L};[{M(Oxidation (M))|F}V]D[KC]VY{I|L}{I|L};[{M(Oxidation (M))|F}V][WH][HK]V{M(Oxidation (M))|F} 4.7932;2.8791;0.4872 -;-;- 155 NaN NaN 199364.9 NaN 13611 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17236 73.224 NaN 158950 35 0 7604.9 0.262 -1 0 61 625.0390197391498 NaN 0 625.3009643554688 PEAK HCD FTMS 0 0 0 17228 30066.86328125 1 0 0 8 NaN NaN 2 T 1 -1 3.9794 0 0 0.31885 0 0 64.51610351831057 1079.4792175378736 1143.9953210561841 0 0 0 0 0 0 0 0 0 T 0.31885 - 5 + NaN NaN 118166.3 NaN 13612 3622 17228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17238 73.229 NaN 1532800 35 0 252840 0.327 + 2091 DFDEIRQEI 9 101 582.7827314951014 1163.5509100570027 2 584.8052978515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _DFDEIRQEI_ ENSG00000087470|ENST00000549701|DNM1L;ENST00000551076.5_1_12:32832273-32863873:+|nuORF;nc|ENSG00000087470|O00429-2|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L 17.11289562659939 0.2125047172822487 2 YAE{I|L}YH{I|L}{I|L} 8 6 44.36 0 0 3.8124 0 0 143.02207959870844 0 143.02207959870844 0 -10.351584312837048 -10.351584312837048 0 0 0 0 0.8609243748081782 0 YAE{I|L}YH{I|L}{I|L} 3.8124 - 3276 + NaN NaN 327886.1 NaN 13613 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17239 73.233 NaN 1412300 35 0 84840 0.261 + 30075 VFTLKPLEF 9 109 547.3185459207689 1092.6225389083377 2 548.3320922851562 MULTI HCD FTMS 0 0 0 17237 96934.5390625 0.5726210211130454 -5 0.14205169677734375 2 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 57.72198328787511 0.020768266150574023 2 {M(Oxidation (M))|F}{I|L}S{I|L}KMK 7 7 39.846 0 0 3.6468 0 0 0 242.09327112369377 242.09327112369377 8.418912340966735 0 0 0 0 1.3283409326844267 0.744727494896694 0.23965182871044374 0 {M(Oxidation (M))|F}{I|L}S{I|L}KMK 3.6468 - 1198 + NaN NaN 314752.6 NaN 13614 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17240 73.236 NaN 403570 35 0 72881 0.261 + 30425 VLPEHLILV 9 68 516.8265226818407 1031.6384924304814 2 516.8262939453125 MULTI HCD FTMS 0 0 0 17237 234292.875 0.5545358627553008 1 -0.02931976318359375 3 Unmodified _VLPEHLILV_ ENSG00000101639|ENST00000506447|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192 23.1484247019978 0.1603590852062899 2 V{I|L}V{I|L} 4 6 41.938 0 0 4.0652 0 0 589.3228016584 0 589.3228016584 0 27.95880017344075 0 0 0 1 0 0 0 V{I|L}V{I|L} 4.0652 - 62 NaN NaN 143286.6 NaN 13615 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17241 73.24 NaN 485010 35 0 59227 0.261 + 17476 LYSSEQLLI 9 90 533.2950202729755 1064.575487612751 2 533.2952880859375 MULTI HCD FTMS 0 0 0 17237 110046.359375 0.7463782522395161 -4 0.11260223388671875 4 Unmodified _LYSSEQLLI_ ENSG00000168209|ENST00000307365|DDIT4 49.55428908609986 0.03219431099695407 2 EAEC{I|L}{I|L}{I|L} 7 5 67.146 0 0 6.3073 0 0 275.1633473126969 0 275.1633473126969 0 35.3571935342505 0 0 0 0.9247425010840047 0 1.1936726795685342 0 EAEC{I|L}{I|L}{I|L} 6.3073 - 2309 NaN NaN 162561.9 NaN 13616 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17242 73.243 NaN 524270 35 0 37587 0.261 + -1 FWWTWPMI 8 102 591.7738677398142 NaN 0 591.7874145507812 PEAK HCD FTMS 0 0 0 17237 56202.16015625 0.6758150808929968 -1 0.0274505615234375 5 Oxidation (M) _FWWTWPM(Oxidation (M))I_ REV__ENSG00000164181|ENST00000508821|ELOVL7 13.50788311687929 0.38822285293237185 2 E{M(Oxidation (M))|F}[PA]MTN 7 -1 20.882 0 0 1.7673 0 0 131.07065777837016 257.11383997135005 388.1844977497202 0 0 0 0 0 0 0 0.6694451763165201 0.3252574989159953 E{M(Oxidation (M))|F}[PA]MTN 1.7673 - 763 + NaN NaN 173138.4 NaN 13617 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17243 73.246 NaN 488890 35 0 21059 0.261 + 11157 IYISKIVVEF 10 84 605.8574330698881 1209.700313206576 2 606.3591918945312 MULTI HCD FTMS 0 0 0 17237 42400.42578125 0.3416836451194666 -2 0.0535888671875 6 Unmodified _IYISKIVVEF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 51.487983226225225 0.0723780666322865 2 [Y{I|L}]{I|L}S[K{I|L}]VVE{M(Oxidation (M))|F} 10 0 + 68.355 0 0 5.6506 5.6506 92.21 0 0 0 6.861818737241734 6.861818737241734 6.861818737241734 39.776296993281406 0 2.504432191740108 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}S[K{I|L}]VVE{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[Y{I|L}][K{I|L}]VVE{M(Oxidation (M))|F};[Y{I|L}]{I|L}S[K{I|L}][TP][Y{I|L}];[YT][{I|L}V][K{I|L}]VVE{M(Oxidation (M))|F} 5.6506;2.3625;2.2376;2.0104 +;-;-;- + 199 NaN NaN 166215.6 NaN 13618 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17244 73.25 NaN 314770 35 0 37725 0.261 -1 SYNNFFRMF 9 65 621.2741910660227 NaN 0 621.273681640625 PEAK HCD FTMS 0 0 0 17237 65970.6875 0.42782412628202876 79 -2.0987548828125 7 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 27.628801355627647 0.1361920736132224 2 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 23.488 0 0 1.8934 0 0 63.998685283999585 465.19208704166255 529.1907723256621 0 0 0 0 0 0.3054621874040891 0 0 0 WNN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8934 - 62 + NaN NaN 145163.2 NaN 13619 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17245 73.253 NaN 88916 35 0 9838.8 0.263 + 9669 HVHIHLLE 8 51 499.2809753417969 NaN 0 499.2809753417969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _HVHIHLLE_ ENST00000518139.5_1_5:149823851-149824075:-|nuORF 10.183394434864962 0.38822285293237185 2 E 1 7 10.797 0 0 1.0834 0 0 131.09295885791454 733.3883761041624 864.481334962077 0 0 0 0 0 0.3807196863200844 0 0 0 + E 1.0834 + + 7 + NaN NaN 102926.5 NaN 13620 3623 17237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17247 73.258 NaN 1360900 35 0 131810 0.327 + 30076 VFTLKPLEF 9 93 547.3185459207689 1092.6225389083377 2 547.3186645507812 MULTI HCD FTMS 0 0 0 17246 390797.8125 0.4378581189740164 -1 0.02931976318359375 1 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 133.0521902211835 0.0004198702180815479 2 V{M(Oxidation (M))|F}T{I|L}K[{I|L}P]E{M(Oxidation (M))|F} 9 0 + 89.121 0 0 8.1566 8.1566 94.185 0 0 0 56.039171939081164 16.478174818886373 16.478174818886373 13.692803136799157 0 2.579689690656103 0 1.524227503252014 0 + + V{M(Oxidation (M))|F}T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V{I|L}K[{I|L}P]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[PG][{I|L}T]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}T]V{I|L}[TA][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[PG][{I|L}T]{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}T]V{I|L}[PG][{I|L}T]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V{I|L}[TA][VP]{M(Oxidation (M))|F}V 8.1566;6.9034;5.8505;5.1373;4.4509;4.2221;4.0843;3.5357;3.3979;3.1691 +;+;-;-;-;-;-;-;-;- + 747 + NaN NaN 298762.7 NaN 13621 3624 17246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17248 73.266 NaN 2370900 35 0 97158 0.271 + 5135 FESLEGPQL 9 124 510.2559336323195 1018.497314331439 2 510.2556457519531 MULTI HCD FTMS 0 0 0 17246 328767.84375 0.783684324653855 -1 0.02931976318359375 2 Unmodified _FESLEGPQL_ REV__tr|U7SSB3|U7SSB3_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01566PE=4SV=1 34.40172386719151 0.0910440009062557 2 SY{I|L}EY{I|L}D 7 -1 56.393 0 0 5.5369 0 0 0 132.04578577213127 132.04578577213127 18.296444610697478 0 0 0 0 0 2 0.5994850021680094 0 SY{I|L}EY{I|L}D 5.5369 - 5513 + NaN NaN 447669.8 NaN 13622 3624 17246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17250 73.271 NaN 42189000 35 0 5589100 0.327 + 26821 SYIEHIFEI 9 115 575.7919771824853 1149.5694014317705 2 575.7918090820312 MULTI HCD FTMS 0 0 0 17249 45234192 1 0 0 1 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 214.13773924641143 3.284580410505023E-19 2 SY{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 90.254 0 0 7.8511 7.8511 88.15 0 0 0 2.193387410435335 2.193387410435335 2.193387410435335 2.193387410435335 0 2.916386562212267 1.6989700043360187 2.173877368056628 0 + + SY{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VEH{I|L}E{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{M(Oxidation (M))|F}{I|L};[YT]VEH{I|L}E{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}NWS{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}HYS{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VQ[PG]P{M(Oxidation (M))|F}E{I|L} 7.8511;7.6603;7.3374;6.6793;6.3565;5.8987;5.5758;5.4294;5.3651;5.32 +;-;+;-;-;-;-;-;-;- + 17444 + NaN NaN 943747.6 NaN 13623 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17251 73.275 NaN 962220 35 0 84602 0.261 -1 YTCRAHNEL 9 104 582.2668150082134 1162.5190770832266 2 582.7819213867188 MULTI HCD FTMS 0 0 0 17249 91752.140625 0.5370530523235874 -2 0.04230499267578125 2 Carbamidomethyl (C) _YTC(Carbamidomethyl (C))RAHNEL_ ENSG00000167178|ENST00000453268|ISLR2 26.268140514670165 0.13340543277302316 2 [{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F}TNE{I|L} 9 -1 + 57.766 0 0 4.969 4.969 83.405 0 0 0 2.5642442415792672 4.704547620583234 2.5642442415792672 2.5642442415792672 0 2.2931576817365436 0 0.5994850021680094 0 [{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F}TNE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VY{M(Oxidation (M))|F}TNE{I|L};[{M(Oxidation (M))|F}T]EY{M(Oxidation (M))|F}TNE{I|L};[{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F}TGGE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VY{M(Oxidation (M))|F}TGGE{I|L};[{M(Oxidation (M))|F}T]EY{M(Oxidation (M))|F}TGGE{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VY{M(Oxidation (M))|F}TP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[C(Carbamidomethyl (C))C]{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VY{M(Oxidation (M))|F}[KA]EE;[{M(Oxidation (M))|F}E]TY{M(Oxidation (M))|F}[KA]EE 4.969;4.7484;4.4443;4.1769;3.9564;3.6522;3.3835;2.6984;2.49;2.2119 -;-;-;-;-;-;-;-;-;- 2134 NaN NaN 243911.5 NaN 13624 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17252 73.279 NaN 1311700 35 0 460520 0.264 -1 0 79 413.19354773523565 824.3725425372713 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17249 761615.4375 0.6572343773815337 15 -0.3679351806640625 3 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 8.2268 0 0 0.99795 0 0 238.05016812496507 423.27219269531304 661.3223608202782 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 0.99795 - 11 + NaN NaN 291656 NaN 13625 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17253 73.282 NaN 578120 35 0 56400 0.261 + 21572 PYMANVYLI 9 67 550.2788794917594 1098.5432060503188 2 550.2786865234375 MULTI HCD FTMS 0 0 0 17249 263061.21875 1 0 0 4 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant 44.40701690623563 0.04511410083598184 2 [{M(Oxidation (M))|F}V]D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L} 9 4 + 56.661 0 0 5.1578 5.1578 91.933 0 0 0 7.147642715192504 38.077053078093215 7.147642715192504 56.35992191423391 0 1.3494850021680094 0 0 0.7302046884880937 [{M(Oxidation (M))|F}V]D{[QC]|[C(Carbamidomethyl (C))A]}VY{I|L}{I|L};[{M(Oxidation (M))|F}V]{I|L}{[NV]|[RG]}{M(Oxidation (M))|F}[{I|L}T]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{I|L}{[NV]|[RG]}{M(Oxidation (M))|F}[DV]{M(Oxidation (M))|F} 5.1578;0.027366;0.027366 -;-;- 171 NaN NaN 176128 NaN 13626 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17254 73.285 NaN 839270 35 0 137790 0.261 + 894 AYANIISQF 9 84 513.766364825471 NaN 0 513.766357421875 PEAK HCD FTMS 0 0 0 17249 225748.96875 0.6053670762773542 -2 0.04230499267578125 5 Unmodified _AYANIISQF_ ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2 110.5527297667825 2.165091618498739E-08 2 AN{I|L}{I|L}SQ 6 3 52.943 0 0 5.1626 0 0 234.10042006660314 162.05715311838563 396.1575731849888 0 0 0 0 0 3.004432191740108 0 0 1.555462187404089 + AN{I|L}{I|L}SQ 5.1626 + + 595 NaN NaN 220732.6 NaN 13627 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17255 73.289 NaN 428840 35 0 63147 0.261 -1 SMTRYFYLF 9 78 622.2946879862326 1242.574823039265 2 622.2953491210938 MULTI HCD FTMS 0 0 0 17249 181517.140625 0.07684457318987263 31 -0.7959442138671875 6 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 32.78568957990786 0.09846250359632436 2 RM{[DS]|[MA]|[CV]|TT}Y{I|L}{M(Oxidation (M))|F} 7 -1 39.411 0 0 3.1717 0 0 312.1137867658219 0 312.1137867658219 0 14.833654194535697 0 0 0 0.8494850021680094 0 0.7059771852360797 0 RM{[DS]|[MA]|[CV]|TT}Y{I|L}{M(Oxidation (M))|F} 3.1717 - 804 NaN NaN 166636.6 NaN 13628 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17256 73.292 NaN 369770 35 0 94545 0.262 + -1 FCSLTNPVL 9 51 525.7680204690957 1049.5214880049914 2 525.7677612304688 MULTI HCD FTMS 0 0 0 17249 105966.984375 0.6100210992381985 -4 0.09589385986328125 7 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SLTNPVL_ REV__ENST00000412804.1_1_3:4532917-4534539:-|nuORF 6.2057823575117 0.30397260197431997 2 NV{I|L} 3 -1 27.619 0 0 2.6316 0 0 705.3102894513687 0 705.3102894513687 0 13.015384402724592 0 0 0 0 0 0 0.3807196863200844 NV{I|L} 2.6316 - 35 NaN NaN 146812.1 NaN 13629 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17257 73.295 NaN 415490 35 0 50593 0.261 + 6585 FPLDLDVKM 9 71 539.2858735445791 NaN 0 539.2857666015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 74.19965305603844 0.00488685981636522 2 P{I|L}D{I|L}DV 6 3 38.397 0 0 3.5666 0 0 147.06946495598442 274.1225985162719 421.19206347225634 0 0 0 0 0 2.079689690656103 0 0 0 + P{I|L}D{I|L}DV 3.5666 + + 232 + NaN NaN 156098.8 NaN 13630 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17258 73.299 NaN 298020 35 0 32519 0.261 + 33341 YFYTPETWS 9 62 597.2594005236087 NaN 0 597.2584838867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YFYTPETWS_ REV__ENSG00000171105|ENST00000302850|INSR;REV__nc|ENSG00000171105|P06213-2|INSR 7.910154910731844 0.25691533546754686 2 D{M(Oxidation (M))|F}N 3 -1 16.198 0 0 1.3583 0 0 166.05897676385626 647.2854964145272 813.3444731783834 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}N 1.3583 - 51 + NaN NaN 135210.4 NaN 13631 3625 17249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17260 73.303 NaN 735580 35 0 102450 0.327 + 3383 EESFFILKY 9 100 588.3022833329046 1174.5900137326091 2 588.302734375 MULTI HCD FTMS 0 0 0 17259 125808.9375 0.33632388255397855 6 -0.112579345703125 1 Unmodified _EESFFILKY_ ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 34.40172386719151 0.0910440009062557 2 {M(Oxidation (M))|F}{I|L}{I|L}KY 5 4 37.206 0 0 3.1676 0 0 492.18434954539026 0 492.18434954539026 0 18.458931237911 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}KY 3.1676 + + 552 + NaN NaN 202913.8 NaN 13632 3626 17259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17261 73.308 NaN 1284000 35 0 150310 0.261 + 27338 SYRIIYNLF 9 100 594.8243265699288 1187.6341002066574 2 594.8250122070312 MULTI HCD FTMS 0 0 0 17259 200054.03125 0.18240558416080363 -6 0.16469573974609375 2 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 80.6760300276096 0.005633624786464751 2 {[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 9 0 + 71.71 0 0 6.038 6.038 85.565 0 0 0 3.65279269351241 46.47583320253139 3.65279269351241 3.713468582313908 0 2.205112052208703 0 0 0.805462187404089 + + {[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}YN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}R{I|L}YN{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}YGG{I|L}{M(Oxidation (M))|F};[YT]VR{I|L}YN{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YGG{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}R{I|L}YGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}R{I|L}YN{M(Oxidation (M))|F}{I|L} 6.038;5.7254;5.2627;5.0059;4.957;4.95;4.6932;4.2305;4.1817;3.9249 +;-;-;-;-;-;-;-;-;- + 745 NaN NaN 300013.2 NaN 13633 3626 17259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17262 73.311 NaN 304530 35 0 27333 0.261 + -1 YLFRMETNK 9 69 609.3028799882109 1216.5912070432216 2 609.3024291992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YLFRM(Oxidation (M))ETNK_ REV__tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1 11.640296217721598 0.25978676193971967 2 [Y{I|L}]{M(Oxidation (M))|F}R{[NV]|[RG]}{[SA]|[TG]}T{M(Oxidation (M))|F} 10 -1 + 47.152 0 0 3.8758 3.8758 89.937 0 0 0 23.440899702813027 14.916892907146178 14.916892907146178 47.15227486541373 0 0.9247425010840047 2 0 0 [Y{I|L}]{M(Oxidation (M))|F}R{[NV]|[RG]}{[SA]|[TG]}T{M(Oxidation (M))|F} 3.8758 - 150 NaN NaN 140793 NaN 13634 3626 17259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17263 73.315 NaN 186750 35 0 16006 0.264 -1 PDGSSKGC 8 51 404.1696931571729 806.3248333811458 2 404.1698913574219 MULTI HCD FTMS 0 0 0 17259 214092.140625 0.025567456630759055 49 -1.2817764282226562 4 Carbamidomethyl (C) _PDGSSKGC(Carbamidomethyl (C))_ ENSG00000161082|ENST00000292672|CELF5;nc|ENSG00000161082|Q8N6W0-2|CELF5 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 117739.2 NaN 13635 3626 17259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17264 73.318 NaN 310990 35 0 38799 0.261 + 29289 TYLQRPSSFH 10 67 618.3107847224283 1234.6070165116564 2 618.3088989257812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TYLQRPSSFH_ ENST00000542472.1_1_12:6626979-6631036:+|nuORF 11.494710602746466 0.4035943721457025 2 [YT]{I|L}Q 4 6 33.672 0 0 2.7274 0 0 0 726.3391207330686 726.3391207330686 19.20818753952375 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 + [YT]{I|L}Q 2.7274 + + 60 + NaN NaN 140390.3 NaN 13636 3626 17259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17266 73.323 NaN 411050 35 0 41927 0.327 + 15307 LPAPFEESL 9 79 501.760953882113 1001.507354831026 2 501.7610778808594 MULTI HCD FTMS 0 0 0 17265 232622.796875 0.705547882454837 1 -0.00937652587890625 1 Unmodified _LPAPFEESL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 97.07464715276575 0.004340583992084827 2 EES{I|L} 4 5 48.488 0 0 4.8415 0 0 525.2947346676701 0 525.2947346676701 0 17.375889677292307 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + EES{I|L} 4.8415 + + 662 NaN NaN 155736.9 NaN 13637 3627 17265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17267 73.327 NaN 466680 35 0 33076 0.261 + 6584 FPLDLDVKM 9 90 539.2862077323906 1076.5578625315811 2 539.7882080078125 MULTI HCD FTMS 0 0 0 17265 82132.7578125 0.30734155951753805 5 -0.09326934814453125 2 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 53.40400417844725 0.026808823219830042 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DPMV{M(Oxidation (M))|F} 8 3 45.276 0 0 4.2056 0 0 0 127.10980581472872 127.10980581472872 23.509621213436994 0 0 0 0 2.1573871488943874 1.5228787452803376 0.7302046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DPMV{M(Oxidation (M))|F} 4.2056 - 691 NaN NaN 164671.3 NaN 13638 3627 17265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17269 73.332 NaN 5660800 35 0 1047400 0.327 + 24260 RYFLPPYTF 9 86 602.3135033827217 1202.6124538322433 2 602.3136596679688 MULTI HCD FTMS 0 0 0 17268 3539810 0.4043222310464638 12 -0.30660247802734375 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 85.64151623876279 0.004640175941193596 2 [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F} 9 0 + 81.916 0 0 6.8115 6.8115 92.714 0 0 0 7.147642715192504 56.025684359364405 7.147642715192504 19.24865027867405 0 2.305462187404089 0 0.4247425010840047 0 + + [YR]{M(Oxidation (M))|F}{I|L}PPYT{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}{I|L}P{[{M(Oxidation (M))|F}D]|MM}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YPP{I|L}[YR]{M(Oxidation (M))|F} 6.8115;5.211;2.1075 +;-;- + 496 NaN NaN 639770.3 NaN 13639 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17270 73.336 NaN 2081800 35 0 304180 0.261 -1 YIVDHTIIM 9 102 560.7873430404603 1119.5601331477205 2 560.8058471679688 MULTI HCD FTMS 0 0 0 17268 55022.34765625 0.4494784625477082 -6 0.1310882568359375 2 Oxidation (M) _YIVDHTIIM(Oxidation (M))_ ENSG00000133028|ENST00000255390|SCO1 30.224811164608877 0.11021837014094292 2 [Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F} 9 -1 + 75.261 0 0 6.7224 6.7224 87.678 0 0 0 12.090606190045108 18.128756960514053 12.090606190045108 6.237125054200234 0 0 1.6989700043360187 1.0189301784845295 0 [Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L}D{I|L}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}AD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHDVV{M(Oxidation (M))|F}E;[Y{I|L}]VV{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VV{[YC]|[HE]}T{I|L}{M(Oxidation (M))|F};[Y{I|L}]VVDHV{M(Oxidation (M))|F}E;[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}T{I|L}{M(Oxidation (M))|F} 6.7224;6.1653;5.6049;5.4909;4.9145;4.7787;4.5555;4.2216;4.1078;3.9984 -;-;-;-;-;-;-;-;-;- 4400 NaN NaN 403175.1 NaN 13640 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17271 73.34 NaN 1286500 35 0 127900 0.261 -1 MRMTCSLKLM 10 102 615.2949336441557 NaN 0 615.313720703125 PEAK HCD FTMS 0 0 0 17268 130825.2890625 0.4643063867495963 37 -0.9779129028320312 3 Oxidation (M) _MRMTCSLKLM(Oxidation (M))_ ENST00000263341.6_1_2:113593144-113593760:-|nuORF 18.1463463914782 0.29565035219289926 2 {I|L}AGEV{[MG]|[TS]}Q 8 -1 42.26 0 0 3.4398 0 0 165.0419090935623 275.1397014388799 440.1816105324422 0 0 0 0 0 0 0 1.1747425010840047 0.5387254899964358 {I|L}AGEV{[MG]|[TS]}Q 3.4398 - 4134 + NaN NaN 301655.3 NaN 13641 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17272 73.343 NaN 578470 35 0 49260 0.261 + 4763 EYTRALFLL 9 61 563.3189332849996 1124.6233136367991 2 563.3187866210938 MULTI HCD FTMS 0 0 0 17268 351995.8125 0.1676082740904048 8 -0.198394775390625 4 Unmodified _EYTRALFLL_ ENSG00000129933|ENST00000262815|MAU2 47.748688679222035 0.03472022231463587 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.177 0 0 2.6833 0 0 733.3751505082407 0 733.3751505082407 0 15.48455006504028 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6833 + + 108 NaN NaN 173779.8 NaN 13642 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17273 73.347 NaN 601630 35 0 187690 0.263 + 3003 EAALEVVL 8 58 422.24483256100643 842.4751121888129 2 422.2448425292969 MULTI HCD FTMS 0 0 0 17268 350168.875 0.37908413327745444 -2 0.0286865234375 5 Unmodified _EAALEVVL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 86.12129899796855 0.01802651791127688 2 EVV{I|L} 4 4 59.033 0 0 7.0071 0 0 384.20149428535314 0 384.20149428535314 0 45.84569609300681 0 0 0 2 0 1.2302046884880937 0 + EVV{I|L} 7.0071 + + 103 NaN NaN 181075.2 NaN 13643 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17274 73.35 NaN 276580 35 0 42179 0.261 + 31439 VYAVVRGLFL 10 54 568.8455935650918 1135.6766341969835 2 568.8463134765625 MULTI HCD FTMS 0 0 0 17268 79450.4140625 0.20314392429124922 3 -0.07118988037109375 6 Unmodified _VYAVVRGLFL_ ENSG00000138111|ENST00000238936|MFSD13A 68.08070601005525 0.01985953044443068 2 [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 10 0 + 83.109 0 0 7.318 7.318 91.745 0 0 0 10.427965835756439 10.427965835756439 10.427965835756439 9.771212547196626 0 2.8494850021680094 1.5228787452803376 0 0 + + [YV]AVVR{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L};[YV]AVVR{[MS]|[{M(Oxidation (M))|F}A]}V{I|L};[YV]ARVV{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L};[YV]KK[KG]VCV{I|L};[YV]KK[KG]VAM{I|L};[YV]ARVV{[MS]|[{M(Oxidation (M))|F}A]}V{I|L} 7.318;6.4576;4.5214;3.907;3.688;3.661 +;-;-;-;-;- + 256 NaN NaN 131234 NaN 13644 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17275 73.353 NaN 877160 35 0 32424 0.261 + 19970 NYGLRTFLF 9 105 565.8033702077354 1129.5921874822707 2 566.305419921875 MULTI HCD FTMS 0 0 0 17268 110864.546875 0.23168707670917166 8 -0.198394775390625 7 Unmodified _NYGLRTFLF_ ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF 45.739877483867886 0.03899552410870734 2 [YT]VY{M(Oxidation (M))|F}T 6 7 49.843 0 0 4.4125 0 0 0 352.2086852398208 352.2086852398208 -0.730480176589424 0 -0.730480176589424 0 0 0 1.6989700043360187 0.5941876774005248 0 [YT]VY{M(Oxidation (M))|F}T 4.4125 - 5889 NaN NaN 227097 NaN 13645 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17276 73.357 NaN 503410 35 0 51510 0.261 -1 TASEMILVL 9 75 496.7702433643494 991.5259337954989 2 496.77032470703125 MULTI HCD FTMS 0 0 0 17268 83706.21875 0.3022759857743131 -2 0.0286865234375 8 Oxidation (M) _TASEM(Oxidation (M))ILVL_ ENSG00000164543|ENST00000319357|STK17A 23.1484247019978 0.1603590852062899 2 {I|L}V{I|L} 3 -1 33.188 0 0 3.3471 0 0 648.2805042951187 0 648.2805042951187 0 21.805482704599672 0 0 0 0.8494850021680094 0 0 0 {I|L}V{I|L} 3.3471 + + 283 NaN NaN 171860.5 NaN 13646 3628 17268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17278 73.361 NaN 260160 35 0 51842 0.327 + 23324 RISLPLPNF 9 51 528.8138131907656 1055.613073448331 2 528.8133544921875 MULTI HCD FTMS 0 0 0 17277 58785.33984375 0.04660879274033697 17 -0.42453765869140625 1 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 17.11289562659939 0.2125047172822487 2 NP{M(Oxidation (M))|F} 3 7 33.672 0 0 3.1898 0 0 679.4390385113355 0 679.4390385113355 0 24.719712763997563 0 0 0 1 0 0 0.3494850021680094 NP{M(Oxidation (M))|F} 3.1898 - 70 + NaN NaN 132759.5 NaN 13647 3629 17277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17279 73.366 NaN 220710 35 0 17399 0.261 + 7573 FYGGVILVL 9 61 490.792348277232 NaN 0 490.7924499511719 PEAK HCD FTMS 0 0 0 17277 17516.5234375 0.14940609458973106 1 -0.0160369873046875 2 Unmodified _FYGGVILVL_ REV__ENSG00000128602|ENST00000249373|SMO;REV__ENST00000495998.1_1_7:128846153-128848718:+|nuORF 14.581692164780916 0.22376707489839515 2 N{M(Oxidation (M))|F}D 3 -1 19.085 0 0 1.9483 0 0 131.23852943256094 469.1749887332419 600.4135181658028 0 0 0 0 0 0 0 0 0.28872548999643577 N{M(Oxidation (M))|F}D 1.9483 - 41 + NaN NaN 132737.7 NaN 13648 3629 17277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17280 73.369 NaN 229950 35 0 30453 0.261 -1 TYIYIQKCF 9 54 618.3107847224283 1234.6070165116564 2 618.3208618164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _TYIYIQKC(Carbamidomethyl (C))F_ ENST00000383746.7_2_3:44396236-44396287:+|nuORF 13.90604991867851 0.24021115267848145 2 [YT]{I|L}Q 4 -1 40.177 0 0 3.2543 0 0 0 726.3363741510374 726.3363741510374 6.709412807357751 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [YT]{I|L}Q 3.2543 - 56 + NaN NaN 116483 NaN 13649 3629 17277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17281 73.373 NaN 100070 35 0 23876 0.263 -1 IPMPDFDL 8 44 482.22839774599265 962.4422425587853 2 482.2281494140625 MULTI HCD FTMS 0 0 0 17277 62294.26171875 0.47246619449666966 4 -0.08419036865234375 4 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 16.942295170755138 0.46913822049235215 2 {M(Oxidation (M))|F}D{I|L} 3 -1 31.198 0 0 3.2415 0 0 569.2519398419937 0 569.2519398419937 0 26.686252728754987 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}D{I|L} 3.2415 + + 11 NaN NaN 100483.9 NaN 13650 3629 17277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17283 73.377 NaN 1345800 35 0 201220 0.327 + 8812 HIYPYFSKN 9 102 584.7920981006934 NaN 0 584.8053588867188 PEAK HCD FTMS 0 0 0 17282 42113.0390625 0.8378308813758006 1 -0.02602386474609375 1 Unmodified _HIYPYFSKN_ REV__ENSG00000100207|ENST00000677622|TCF20;REV__nc|ENSG00000100207|Q9UGU0-2|TCF20 18.13498045792455 0.19991664011725976 2 VAE{I|L}YH 6 -1 40.935 0 0 3.506 0 0 211.0583552502813 241.15508447818596 452.2134397284673 0 0 0 0 0 0 0 0.9163865622122672 0 VAE{I|L}YH 3.506 - 997 + NaN NaN 295329.3 NaN 13651 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17284 73.382 NaN 422930 35 0 37449 0.261 -1 LEEMGKSEML 10 90 591.7734579701338 NaN 0 591.787353515625 PEAK HCD FTMS 0 0 0 17282 95742.3515625 1 0 0 2 Oxidation (M) _LEEMGKSEM(Oxidation (M))L_ ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000107731|Q8IZJ1-2|UNC5B 11.494710602746466 0.33034640988000663 2 {M(Oxidation (M))|F}PT{M(Oxidation (M))|F} 4 -1 17.256 0 0 1.4604 0 0 131.0684769742159 555.2116182916624 686.2800952658783 0 0 0 0 0 0.2742275032520141 0 0.6861818737241735 0 {M(Oxidation (M))|F}PT{M(Oxidation (M))|F} 1.4604 - 258 + NaN NaN 154894.4 NaN 13652 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17285 73.385 NaN 656470 35 0 55475 0.261 -1 YTHMLEVL 8 94 511.25480385671625 1020.4950547802325 2 511.2544860839844 MULTI HCD FTMS 0 0 0 17282 226277.171875 0.318209482382804 28 -0.7384185791015625 3 Oxidation (M) _YTHM(Oxidation (M))LEVL_ ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1 13.50788311687929 0.4944073034352369 2 [HN]{I|L}E 4 -1 22.976 0 0 2.2514 0 0 0 524.2289522760374 524.2289522760374 2.234112593013542 0 0 0 0 0 1.154901959985743 0 0 [HN]{I|L}E 2.2514 - 1243 + NaN NaN 185802 NaN 13653 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17286 73.389 NaN 322120 35 0 33624 0.261 + 29323 TYNPEIYVI 9 67 556.2870851845961 1110.559617435992 2 556.2874755859375 MULTI HCD FTMS 0 0 0 17282 157041.640625 0.9024862974829033 1 -0.02602386474609375 4 Unmodified _TYNPEIYVI_ ENSG00000164171|ENST00000296585|ITGA2 24.020572477871973 0.15282392193088168 2 [YV]Q[EP]TYV{I|L} 9 3 + 53.61 0 0 4.8273 4.8273 86.66 0 0 0 16.222412206649466 46.620084195425164 16.222412206649466 9.208187539523749 0 0.8252574989159953 1.3979400086720375 0.3807196863200844 0 [YV]Q[EP]TYV{I|L};[YV][AG][EP]TYV{I|L};[YV]Q{M(Oxidation (M))|F}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L};[YV][AG]{M(Oxidation (M))|F}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L};[YN]{I|L}[EP]TYV{I|L};[YN]{I|L}{M(Oxidation (M))|F}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[{M(Oxidation (M))|F}E][{I|L}T]EV{I|L} 4.8273;3.9981;3.9062;3.0771;2.8678;1.9468;0.37088 -;-;-;-;-;-;- 356 NaN NaN 142139 NaN 13654 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17287 73.392 NaN 413490 35 0 22736 0.261 + 8556 HASFELWQL 9 78 565.7855851735335 1129.556617413867 2 565.8041381835938 MULTI HCD FTMS 0 0 0 17282 123461.96875 0.8960697099328127 2 -0.038726806640625 5 Unmodified _HASFELWQL_ ENSG00000065060|ENST00000192788|BLTP3A 24.020572477871973 0.15282392193088168 2 [YT]VY{[SA]|[TG]}WGA 9 8 35.841 0 0 3.173 0 0 0 128.07451759578558 128.07451759578558 5.2512186568557055 0 0 0 0 1.4247425010840047 1.154901959985743 0 0 [YT]VY{[SA]|[TG]}WGA 3.173 - 666 NaN NaN 150603.5 NaN 13655 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17288 73.395 NaN 294830 35 0 20084 0.261 + 11158 IYISKIVVEF 10 72 605.8574330698881 1209.700313206576 2 605.8577880859375 MULTI HCD FTMS 0 0 0 17282 159227.78125 0.9563787454205055 4 -0.09429931640625 6 Unmodified _IYISKIVVEF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 47.7319792270244 0.08603782309361356 2 [Y{I|L}]{I|L}S[K{I|L}]VVE{M(Oxidation (M))|F} 10 0 + 62.375 0 0 5.1562 5.1562 92.079 0 0 0 23.716459608685483 39.71130963036558 23.716459608685483 62.37510972025312 0 1.9802046884880937 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}S[K{I|L}]VVE{M(Oxidation (M))|F} 5.1562 + + 71 NaN NaN 137786.5 NaN 13656 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17289 73.399 NaN 260500 35 0 19702 0.262 -1 MPDIDFNL 8 65 490.72336151393813 979.4321700946763 2 490.7237854003906 MULTI HCD FTMS 0 0 0 17282 114718.390625 1 0 0 7 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 D{M(Oxidation (M))|F}N{I|L} 4 -1 39.68 0 0 4.0514 0 0 472.19563491035314 0 472.19563491035314 0 30.21652514092061 0 0 0 0.4247425010840047 0 0 0.3494850021680094 D{M(Oxidation (M))|F}N{I|L} 4.0514 + + 41 NaN NaN 123473.7 NaN 13657 3630 17282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17291 73.403 NaN 581580 35 0 56335 0.327 + 30077 VFTLKPLEF 9 77 547.3185459207689 1092.6225389083377 2 547.318603515625 MULTI HCD FTMS 0 0 0 17290 232072.5 0.2600189281141317 6 -0.1467437744140625 1 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 106.94017166704063 0.003441928997083001 2 [{M(Oxidation (M))|F}V]T{I|L}K[{I|L}P]E{M(Oxidation (M))|F} 9 0 + 75.429 0 0 6.9034 6.9034 92.328 0 0 0 6.266734124050544 60.814243664528576 6.266734124050544 15.413926851582254 0 2.8807196863200843 0 2.1549471895720984 0 + + [{M(Oxidation (M))|F}V]T{I|L}K[{I|L}P]E{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[{I|L}P]E{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K{I|L}TEV;[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TV[VS][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T{I|L}[TA][VP]{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}[TA][VP]V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]TV[VS][VP]{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SV[VS][VP]V{M(Oxidation (M))|F};{[ET]|[MV]}V{I|L}K[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.9034;5.4927;4.6459;4.6108;4.1118;3.6956;3.2001;3.1966;2.7011;2.6589 +;-;-;-;-;-;-;-;-;- + 404 NaN NaN 177514.8 NaN 13658 3631 17290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17292 73.408 NaN 909380 35 0 197420 0.261 + 32170 VYSQFITQL 9 102 549.795283879968 1097.576014826736 2 549.7953491210938 MULTI HCD FTMS 0 0 0 17290 205808.890625 0.2064820090694408 -5 0.09987640380859375 2 Unmodified _VYSQFITQL_ ENSG00000113522|ENST00000378823|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 117.83759599426817 0.001662893820975323 2 [YV]SQ{M(Oxidation (M))|F}{I|L}TQ{I|L} 9 0 + 87.874 0 0 8.0062 8.0062 88.294 0 0 0 14.73172687923855 14.973024840566467 14.73172687923855 1.9188552623891297 0 2.368415180652539 1 1.416386562212267 0.8633643341304672 + + [YV]SQ{M(Oxidation (M))|F}{I|L}TQ{I|L};[YV]SQ{M(Oxidation (M))|F}{I|L}TAG{I|L};[Y{I|L}][NS]{M(Oxidation (M))|F}{I|L}TQ{I|L};[YV]S[AG]{M(Oxidation (M))|F}{I|L}TQ{I|L};[Y{I|L}][NS]{M(Oxidation (M))|F}{I|L}TAG{I|L};[YV]S[AG]{M(Oxidation (M))|F}{I|L}TAG{I|L};{[DA]|[EG]}[YK]{M(Oxidation (M))|F}{I|L}TQ{I|L};[YV]SQ{M(Oxidation (M))|F}[QT]{I|L}{I|L};[YV]SQ[YG][{I|L}V]G{I|L};[YV]SQNVY{I|L}{I|L} 8.0062;7.8313;6.664;6.5989;6.4891;6.2097;4.108;2.1411;2.0434;1.9759 +;-;-;-;-;-;-;-;-;- + 1613 NaN NaN 222551.1 NaN 13659 3631 17290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17293 73.411 NaN 144400 35 0 16085 0.261 + -1 CVVCFVLLL 9 61 533.2950202729755 1064.575487612751 2 533.2957153320312 MULTI HCD FTMS 0 0 0 17290 46856.44140625 0.3177990534315227 4 -0.10439300537109375 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))VVCFVLLL_ REV__ENST00000379205.4_1_4:159589669-159589741:-|nuORF 14.581692164780916 0.23437375358055648 2 A[EC]{I|L}{I|L}{I|L} 6 -1 27.396 0 0 2.5734 0 0 404.2042713849625 0 404.2042713849625 0 15.31743128760553 0 0 0 0.3494850021680094 0 0 0 A[EC]{I|L}{I|L}{I|L} 2.5734 - 71 NaN NaN 110823.2 NaN 13660 3631 17290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17295 73.416 NaN 22728000 35 0 3065700 0.327 + 26822 SYIEHIFEI 9 108 575.7919771824853 1149.5694014317705 2 575.7926025390625 MULTI HCD FTMS 0 0 0 17294 17864472 0.39493293038151317 7 -0.1898345947265625 1 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 158.20266083822983 1.5497770410472245E-07 2 [YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L} 9 2 + 80.676 0 0 7.0179 7.0179 87.256 0 0 0 3.711375162600703 16.478174818886373 3.711375162600703 3.711375162600703 0 1.860924374808178 1.0969100130080565 1.3807196863200843 0 [YT]VEH{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}{M(Oxidation (M))|F}E{I|L};[YT]VEH{I|L}E{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{M(Oxidation (M))|F}{I|L};[YT]VEH{I|L}E{I|L}{M(Oxidation (M))|F};[YT]VEHE{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EH{I|L}E{I|L}{M(Oxidation (M))|F};{I|L}{[{M(Oxidation (M))|F}C]|[YS]}EH{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EHE{I|L}{M(Oxidation (M))|F}{I|L};[YT]VEHE{M(Oxidation (M))|F}{I|L}{I|L} 7.0179;6.6951;6.2334;5.9105;5.1288;4.8458;4.8059;4.5686;4.523;4.5185 -;+;-;-;-;-;-;-;-;- + 9825 NaN NaN 493948.5 NaN 13661 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17296 73.421 NaN 1104300 35 0 395680 0.264 -1 0 62 413.19354773523565 824.3725425372713 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17294 617507.875 0.5328770712500414 22 -0.5918655395507812 2 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 8.8515 0 0 1.0737 0 0 238.05370816402757 423.2719833056117 661.3256914696392 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 1.0737 - 11 + NaN NaN 261542 NaN 13662 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17297 73.424 NaN 1323700 35 0 79121 0.261 + 11561 IYSRYFFSF 9 110 615.3033123343973 1228.5920717355946 2 615.3153686523438 MULTI HCD FTMS 0 0 0 17294 292061.625 0.45072664335831614 -4 0.083892822265625 3 Unmodified _IYSRYFFSF_ ENSG00000137975|ENST00000370565|CLCA2 96.0343551737317 0.004367843638107011 2 {I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 2 + 74.927 0 0 6.0986 6.0986 84.778 0 0 0 14.185800432891426 9.573259432077549 9.573259432077549 1.5887093670372678 0 2.2179001828205482 1.3010299956639813 1.2447026752325154 0 {I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRSY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}YRCV[SG]TPS{M(Oxidation (M))|F};{I|L}YRSD{[MG]|[TS]}Q{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[NV]|[RG]}VEGA{I|L}{M(Oxidation (M))|F};{I|L}YRYS[TP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.0986;5.9693;5.8536;5.3194;5.1901;5.0744;4.7154;4.5559;4.4983;4.4707 -;-;+;-;-;-;-;-;-;- + 16231 + NaN NaN 292320.1 NaN 13663 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17298 73.427 NaN 1206600 35 0 139580 0.261 + 35728 YYLNEIQSF 9 107 588.7821771061409 1175.5498012790817 2 588.7821655273438 MULTI HCD FTMS 0 0 0 17294 337534 0.27722484407159975 -4 0.083892822265625 4 Unmodified _YYLNEIQSF_ ENSG00000160284|ENST00000291672|SPATC1L;nc|ENSG00000160284|Q9H0A9-2|SPATC1L 157.7952019732125 5.857147217999733E-07 2 YY{I|L}NE{I|L}QS{M(Oxidation (M))|F} 9 0 + 113.25 0 0 9.6342 9.6342 93.918 0 0 0 20.87128018967597 71.80039825851489 20.87128018967597 9.208187539523749 0 2.5 1.5228787452803376 0.6307196863200843 1.5114393726401687 + + YY{I|L}NE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}QS{M(Oxidation (M))|F};[YV][YQ]E{I|L}QS{M(Oxidation (M))|F};YY{I|L}GGE{I|L}[AG]S{M(Oxidation (M))|F};[YV][YQ]E{I|L}[AG]S{M(Oxidation (M))|F};{[CP]|[EA]}K[QP]E{I|L}QS{M(Oxidation (M))|F};{[CP]|[EA]}K[QP]E{I|L}[AG]S{M(Oxidation (M))|F};{[CP]|[EA]}K[QP]E{[QS]|[NT]}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QNE{I|L}{I|L}YY 9.6342;8.8509;8.2031;7.5075;6.7855;6.7242;6.4344;5.3575;2.6216;2.1792 +;-;-;-;-;-;-;-;-;- + 2587 NaN NaN 271933.8 NaN 13664 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17299 73.431 NaN 146260 35 0 24053 0.261 -1 0 41 611.1821125094682 610.1748360428682 1 610.9979858398438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111487.7 NaN 13665 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17300 73.434 NaN 371140 35 0 18189 0.261 + 19062 NEFELYYR 8 83 567.2652794288814 NaN 0 567.2802124023438 PEAK HCD FTMS 0 0 0 17294 32274.32421875 1 0 0 6 Unmodified _NEFELYYR_ REV__tr|U7SYD1|U7SYD1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00972PE=4SV=1 14.838274106304384 0.38780017429789254 2 VY{M(Oxidation (M))|F}T 4 -1 22.18 0 0 1.9585 0 0 265.11221061381895 354.1299227350219 619.2421333488409 0 0 0 0 0 0 0 0.6747425010840047 0 VY{M(Oxidation (M))|F}T 1.9585 - 488 + NaN NaN 149001.7 NaN 13666 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17301 73.437 NaN 260030 35 0 27785 0.261 -1 YNWPEMKLF 9 73 622.2946879862326 1242.574823039265 2 622.2948608398438 MULTI HCD FTMS 0 0 0 17294 111311.2421875 0.04712318003512503 38 -1.0348739624023438 7 Oxidation (M) _YNWPEM(Oxidation (M))KLF_ ENSG00000198354|ENST00000360028|DCAF12L2;ENSG00000198889|ENST00000371126|DCAF12L1 14.838274106304384 0.23215694253501695 2 Y{I|L}{M(Oxidation (M))|F} 3 -1 31.198 0 0 2.5107 0 0 801.3483753888687 0 801.3483753888687 0 5.255762612236907 0 0 0 0.5 0 0 0 Y{I|L}{M(Oxidation (M))|F} 2.5107 - 114 NaN NaN 130224.2 NaN 13667 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17302 73.441 NaN 216690 35 0 46757 0.262 -1 MPSVFQNVL 9 52 525.7680204690957 1049.5214880049914 2 525.7683715820312 MULTI HCD FTMS 0 0 0 17294 69332.265625 0.3991256818214731 2 -0.055572509765625 8 Oxidation (M) _M(Oxidation (M))PSVFQNVL_ ENSG00000171940|ENST00000371471|ZNF217 5.296884461304476 0.3108627248283497 2 NV{I|L} 3 -1 26.198 0 0 2.4962 0 0 705.3101673810562 0 705.3101673810562 0 24.93882771791494 0 0 0 0 0 0 0 NV{I|L} 2.4962 + + 4 NaN NaN 128403.4 NaN 13668 3632 17294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17304 73.446 NaN 1801700 35 0 251930 0.327 + 27339 SYRIIYNLF 9 101 594.8243265699288 1187.6341002066574 2 594.8242797851562 MULTI HCD FTMS 0 0 0 17303 683632.625 0.623323646793589 1 -0.02614593505859375 1 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 121.5340881639634 0.001118397630175091 2 {[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 9 0 + 84.669 0 0 7.1292 7.1292 91.193 0 0 0 7.851146263759617 58.982681938564966 7.851146263759617 9.208187539523763 0 2.9291746928241125 0 0.5138793319624578 0.805462187404089 + + {[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}YGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}NY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}{I|L}NY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}GGY{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}N{I|L}Y{M(Oxidation (M))|F};[YT][RV]{I|L}YN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}{I|L}GGY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}R{I|L}{I|L}GG{I|L}Y{M(Oxidation (M))|F};[YT][RV]{I|L}YGG{I|L}{M(Oxidation (M))|F} 7.1292;6.3539;5.9681;5.2765;5.1928;5.0616;5.0586;4.5012;4.2862;4.2833 +;-;-;-;-;-;-;-;-;- + 1175 NaN NaN 360477.3 NaN 13669 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17305 73.45 NaN 1558300 35 0 98141 0.261 + 11562 IYSRYFFSF 9 120 615.3033123343973 1228.5920717355946 2 615.3029174804688 MULTI HCD FTMS 0 0 0 17303 403609.75 0.6228742575961123 -3 0.06815338134765625 2 Unmodified _IYSRYFFSF_ ENSG00000137975|ENST00000370565|CLCA2 93.44831873261192 0.004435607726849536 2 {I|L}YSRY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 80.402 0 0 6.5442 6.5442 85.028 0 0 0 6.400152172117345 16.713948420608595 6.400152172117345 0.3689310708045923 0 2.5400990676322905 1.5228787452803376 1.5114393726401687 0 + + {I|L}YSRY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}YRSY{M(Oxidation (M))|F}AY{M(Oxidation (M))|F};{I|L}Y[HT][PA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRYS[TP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{I|L}YRSY[TP]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]SR{[CA]|SS}EGA{I|L}{M(Oxidation (M))|F} 6.5442;6.5142;6.4748;5.1546;5.1246;5.0851;4.5853;4.5765;4.537;4.498 +;-;-;-;-;-;-;-;-;- + 22850 + NaN NaN 328352.7 NaN 13670 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17306 73.454 NaN 901310 35 0 63266 0.262 + 5507 FLAQEDPSL 9 99 510.2559336323195 1018.497314331439 2 510.24664306640625 MULTI HCD FTMS 0 0 0 17303 52478.3984375 0.12509282467929347 8 -0.21613311767578125 3 Unmodified _FLAQEDPSL_ REV__DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant;REV__ENSG00000183914|ENST00000572933|DNAH2;REV__nc|ENSG00000183914|Q9P225-2|DNAH2 30.636539890814138 0.10832830463492794 2 [YT]VY{M(Oxidation (M))|F}TM 7 -1 47.67 0 0 4.6804 0 0 0 110.08321492344047 110.08321492344047 -4.6886187556629295 0 -4.6886187556629295 0 0 0 1.3979400086720375 1.25 0 [YT]VY{M(Oxidation (M))|F}TM 4.6804 - 2940 NaN NaN 224896.8 NaN 13671 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17307 73.457 NaN 247460 35 0 25079 0.261 + 28892 TWDPALAQI 9 61 507.7666123595984 1013.5186717859968 2 507.7664489746094 MULTI HCD FTMS 0 0 0 17303 28850.138671875 0.30268330558940953 1 -0.02614593505859375 4 Unmodified _TWDPALAQI_ ENSG00000139278|ENST00000266659|GLIPR1;nc|ENSG00000139278|P48060-2|GLIPR1 38.175570920033316 0.07371992880350783 2 {I|L}AQ{I|L} 4 5 41.67 0 0 4.1114 0 0 570.2431507794937 0 570.2431507794937 0 27.06608156627958 0 0 0 1.274227503252014 0 0 0 + {I|L}AQ{I|L} 4.1114 + + 180 NaN NaN 125962.4 NaN 13672 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17308 73.46 NaN 96262 35 0 12113 0.261 -1 LEVPDMNI 8 45 473.73125633104536 945.4479597288907 2 473.7314453125 MULTI HCD FTMS 0 0 0 17303 39586.1796875 0.05179705760983362 60 -1.6396713256835938 5 Oxidation (M) _LEVPDM(Oxidation (M))NI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 15.847184025352803 0.47719562709667024 2 {I|L}N{I|L} 3 -1 29.45 0 0 3.115 0 0 587.2262639732157 0 587.2262639732157 0 17.71144069483583 0 0 0 0.3252574989159953 0 0 0 {I|L}N{I|L} 3.115 - 21 NaN NaN 100517.5 NaN 13673 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17309 73.464 NaN 118240 35 0 14845 0.261 + 1743 CLCGKFVL 8 43 441.73205281408013 NaN 0 441.7316589355469 PEAK HCD FTMS 0 0 0 17303 20616.95703125 0.24224564313265395 3 -0.08507537841796875 6 Unmodified _CLCGKFVL_ ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 9.347437153973935 0.38822285293237185 2 V 1 7 16.237 0 0 1.8421 0 0 131.0941709692168 648.2689913385374 779.3631623077542 0 0 0 0 0 0.9247425010840047 0 0 0 + V 1.8421 + + 4 + NaN NaN 107845.7 NaN 13674 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17310 73.467 NaN 75387 35 0 9416.4 0.261 + 35037 YTILFEVL 8 46 499.28291315314215 NaN 0 499.2811584472656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YTILFEVL_ REV__ENSG00000137962|ENST00000260526|ARHGAP29;REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF 4.75600775471527 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.70139 0 0 633.37291141195 261.0875643365844 894.4604757485345 0 0 0 0 0 0 0 0 0 V 0.70139 + + 3 + NaN NaN 102406.7 NaN 13675 3633 17303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17312 73.472 NaN 3064000 35 0 576060 0.327 + 24261 RYFLPPYTF 9 87 602.3135033827217 1202.6124538322433 2 602.313720703125 MULTI HCD FTMS 0 0 0 17311 1461893.5 0.1669795953659444 18 -0.48424530029296875 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 78.7280429016045 0.006263961847259105 2 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 10 7 74.544 0 0 6.1985 0 0 0 60.992247735372 60.992247735372 49.120768972555595 0 0 0 0 2 1.6989700043360187 1.9049471895720984 0 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 6.1985 - 1044 NaN NaN 556174.8 NaN 13676 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17313 73.476 NaN 1430900 35 0 160570 0.261 + 28224 TLFGYIYPF 9 111 560.7873430404603 1119.5601331477205 2 560.8057861328125 MULTI HCD FTMS 0 0 0 17311 85252.140625 0.6964261382742608 -1 0.02614593505859375 2 Unmodified _TLFGYIYPF_ REV__ENSG00000174937|ENST00000641993|OR5M3 38.15118350030904 0.07383188072201104 2 [Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F} 9 -1 + 59.778 0 0 5.3394 5.3394 83.893 0 0 0 2.442642798745709 11.04303111733195 2.442642798745709 2.442642798745709 0 0 1.6989700043360187 0.6747425010840047 0 [Y{I|L}]VHD{I|L}{I|L}T{M(Oxidation (M))|F};[YV]{I|L}HD{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]VHD{I|L}T{I|L}{M(Oxidation (M))|F};[YV]V{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}T{M(Oxidation (M))|F};[YV]{I|L}HD{I|L}T{I|L}{M(Oxidation (M))|F};[TP]V{M(Oxidation (M))|F}[QA]P{I|L}T{M(Oxidation (M))|F};[YV]V{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[YC]|[HE]}{I|L}T{M(Oxidation (M))|F};{[YC]|[HE]}{I|L}{I|L}[{M(Oxidation (M))|F}T]{I|L}T{M(Oxidation (M))|F} 5.3394;5.1212;4.679;4.522;4.4637;4.4608;4.2083;4.1665;4.1083;4.0396 -;-;-;-;-;-;-;-;-;- 4131 NaN NaN 308207.8 NaN 13677 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17314 73.48 NaN 1236300 35 0 84785 0.261 + 5768 FPAHILDCL 9 101 514.7650941766512 1027.5156354201024 2 514.7655639648438 MULTI HCD FTMS 0 0 0 17311 456546.3125 0.30342994752490415 4 -0.1180572509765625 3 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 179.2298980043202 1.129651853483471E-12 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HA{I|L}{I|L}DC{I|L} 9 2 + 82.935 0 0 8.0714 8.0714 89.122 0 0 0 3.23953970530674 43.247074687059516 3.23953970530674 3.7628749457997657 0 2.504432191740108 1.2218487496163564 0.6109243748081782 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HA{I|L}{I|L}DC{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}AH{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{M(Oxidation (M))|F}C{I|L};{M(Oxidation (M))|F}PHA{I|L}{I|L}DC{I|L};{I|L}MHA{I|L}[PA]E{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{M(Oxidation (M))|F}{I|L};{M(Oxidation (M))|F}PAH{I|L}{I|L}DC{I|L};{I|L}MAH{I|L}[PA]E{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}A{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{I|L}{M(Oxidation (M))|F} 8.0714;7.7052;7.6494;7.5612;7.4289;7.2528;7.195;7.0626;6.8115;6.7619 -;+;-;-;-;-;+;-;-;- + 1511 NaN NaN 280892.2 NaN 13678 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17315 73.483 NaN 276370 35 0 30363 0.261 + 15308 LPAPFEESL 9 59 501.760953882113 1001.507354831026 2 501.760986328125 MULTI HCD FTMS 0 0 0 17311 186185.59375 0.564703258573995 8 -0.209564208984375 4 Unmodified _LPAPFEESL_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 74.42276476219924 0.007657080072768255 2 EES{I|L} 4 5 50.433 0 0 5.0357 0 0 525.2956428354623 0 525.2956428354623 0 36.620768972555595 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + EES{I|L} 5.0357 + + 94 NaN NaN 136802.8 NaN 13679 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17316 73.486 NaN 150940 35 0 15130 0.262 + 28805 TTSMHSGS 8 48 404.1696931571729 806.3248333811458 2 404.1700744628906 MULTI HCD FTMS 0 0 0 17311 131990.875 0.015762703676868987 57 -1.5547637939453125 5 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114915.8 NaN 13680 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17317 73.49 NaN 237040 35 0 49366 0.261 + 33759 YLFHGLWEF 9 59 606.2991118532769 1210.5836707733538 2 606.2979736328125 MULTI HCD FTMS 0 0 0 17311 37111.8046875 0.6362267500296831 -5 0.1103363037109375 6 Unmodified _YLFHGLWEF_ REV__ENSG00000047936|ENST00000368507|ROS1;REV__nc|ENSG00000047936|P08922|ROS1;REV__ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant 12.531546534597751 0.2520865569484384 2 [Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RV]{I|L}[C(Carbamidomethyl (C))D] 9 -1 + 14.332 0 0 1.1839 1.1839 86.343 0 0 0 2.0961429319934446 5.748031033778748 2.0961429319934446 14.331524890260997 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RV]{I|L}[C(Carbamidomethyl (C))D] 1.1839 - 63 NaN NaN 118943.3 NaN 13681 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17318 73.493 NaN 146480 35 0 21227 0.264 + 12006 KGPNQGRL 8 51 435.2510723915091 868.4875918498183 2 435.2505187988281 MULTI HCD FTMS 0 0 0 17311 9901.384765625 0.024835693282578827 -20 0.496368408203125 7 Unmodified _KGPNQGRL_ ENSG00000187325|ENST00000341864|TAF9B 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.9562 0 0 703.4087171933714 0 703.4087171933714 0 2.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.9562 - 11 + NaN NaN 107014 NaN 13682 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17319 73.496 NaN 197300 35 0 11344 0.261 + 20504 PDGETKGQTFN 11 62 597.2727390078412 NaN 0 597.2599487304688 PEAK HCD FTMS 0 0 0 17311 11597.8837890625 0.4077177366026189 -2 0.055572509765625 8 Unmodified _PDGETKGQTFN_ REV__ENSG00000188611|ENST00000682911|ASAH2;REV__nc|ENSG00000188611|Q9NR71-2|ASAH2 4.897010918128616 0.3282287337590871 2 CQ{I|L}R 4 -1 15.522 0 0 1.3016 0 0 166.08113052913637 523.1850679986936 689.26619852783 0 0 0 0 0 0 0 0 0.3494850021680094 CQ{I|L}R 1.3016 - 81 + NaN NaN 121576.4 NaN 13683 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17320 73.5 NaN 83124 35 0 7457.1 0.261 -1 IPCLAGPDAF 10 49 530.7584385236535 NaN 0 530.7584838867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))LAGPDAF_ ENSG00000140948|ENST00000671377|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;nc|ENSG00000140948|Q8WYQ9|ZCCHC14 13.90604991867851 0.3282826376286837 2 AD 2 -1 20.969 0 0 1.9791 0 0 165.07935949308506 705.3361300104124 870.4154895034974 0 0 0 0 0 1 0 0 0 AD 1.9791 - 7 + NaN NaN 100236.2 NaN 13684 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17321 73.503 NaN 46540 35 0 6996 0.261 + 2356 DPDSHFPAWRE 11 33 452.8701722198552 NaN 0 452.8797302246094 PEAK HCD FTMS 0 0 0 17311 8438.796875 0.38462375245716335 -4 0.09429931640625 10 Unmodified _DPDSHFPAWRE_ ENSG00000122484|ENST00000610020|RPAP2;nc|ENSG00000122484|Q8IXW5-2|RPAP2;RPAP2|p.N595Mfs*7|1|0.26|ENSG00000122484|chr1:92380814-92380814|A/-|frameshift_variant 0.40826533853263924 0.34096201227758716 2 {I|L} 1 11 0.088644 0 0 0.0098087 0 0 395.93796299264164 391.6742342584594 787.6121972511011 0 0 0 0 0 0 0 0 0 {I|L} 0.0098087 - 1 + NaN NaN 100270.5 NaN 13685 3634 17311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17323 73.508 NaN 299380 35 0 80150 0.327 + 3004 EAALEVVL 8 58 422.24483256100643 842.4751121888129 2 422.2447814941406 MULTI HCD FTMS 0 0 0 17322 302527.53125 0.32750879693826085 5 -0.13101959228515625 1 Unmodified _EAALEVVL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 49.66892048692302 0.12981580074710167 2 EVV{I|L} 4 4 46.938 0 0 5.5715 0 0 384.2010165851004 0 384.2010165851004 0 30.740312677277185 0 0 0 1.5 0 0 0 + EVV{I|L} 5.5715 + + 29 + NaN NaN 133340.9 NaN 13686 3635 17322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17324 73.512 NaN 362650 35 0 64156 0.261 -1 TASEMILVL 9 57 496.7702433643494 991.5259337954989 2 496.7704772949219 MULTI HCD FTMS 0 0 0 17322 192440.078125 0.6949306178965371 5 -0.13101959228515625 2 Oxidation (M) _TASEM(Oxidation (M))ILVL_ ENSG00000164543|ENST00000319357|STK17A 28.486842064014134 0.11819662193267319 2 {I|L}{I|L}V{I|L} 4 -1 37.713 0 0 3.8035 0 0 535.193162986525 0 535.193162986525 0 32.65104138472122 0 0 0 1 0 0 0 {I|L}{I|L}V{I|L} 3.8035 + + 46 NaN NaN 140556.2 NaN 13687 3635 17322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17325 73.516 NaN 347780 35 0 17470 0.261 + 6586 FPLDLDVKM 9 75 539.2858735445791 NaN 0 539.2852172851562 PEAK HCD FTMS 0 0 0 17322 66036.0234375 0.2923452919693033 5 -0.13101959228515625 3 Unmodified _FPLDLDVKM_ ENSG00000114698|ENST00000354952|PLSCR4;ENSG00000188313|ENST00000342435|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1 70.33199760932243 0.00615208821803917 2 KV{NN|[MP]|[D{I|L}]|[EV]}D{I|L} 6 6 17.083 0 0 1.5869 0 0 149.05163869704307 241.09845911197502 390.1500978090181 0 0 0 0 0 1.701163485412895 0 0.3494850021680094 0.5 KV{NN|[MP]|[D{I|L}]|[EV]}D{I|L} 1.5869 - 557 + NaN NaN 141518.7 NaN 13688 3635 17322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17326 73.519 NaN 301180 35 0 43489 0.261 + 20855 PIEVFYESK 9 72 556.2870851845961 1110.559617435992 2 557.3084106445312 MULTI HCD FTMS 0 0 0 17322 41872.32421875 0.755722957947675 3 -0.081939697265625 4 Unmodified _PIEVFYESK_ REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;REV__FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;REV__FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;REV__FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;REV__FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;REV__FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 12.531546534597751 0.2520865569484384 2 [W{I|L}][YQ]QYV 7 -1 31.215 0 0 2.8107 0 0 0 127.06654777017026 127.06654777017026 12.542644353703519 0 0 0 0 0 1.6989700043360187 0 0 [W{I|L}][YQ]QYV 2.8107 - 403 NaN NaN 121970 NaN 13689 3635 17322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17327 73.522 NaN 284160 35 0 63679 0.261 + 33760 YLFHGLWEF 9 60 606.2991118532769 1210.5836707733538 2 606.2991333007812 MULTI HCD FTMS 0 0 0 17322 26850.9140625 0.46031902606624453 -4 0.10439300537109375 5 Unmodified _YLFHGLWEF_ REV__ENSG00000047936|ENST00000368507|ROS1;REV__nc|ENSG00000047936|P08922|ROS1;REV__ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant 12.531546534597751 0.2520865569484384 2 [Y{I|L}]K 3 -1 30.062 0 0 2.4832 0 0 0 803.3179596739975 803.3179596739975 21.63303128443836 0 0 0 0 0.5 2 0 0 [Y{I|L}]K 2.4832 - 60 NaN NaN 137143.1 NaN 13690 3635 17322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17328 73.526 NaN 156590 35 0 15712 0.261 + 31440 VYAVVRGLFL 10 59 568.8455935650918 1135.6766341969835 2 568.8460083007812 MULTI HCD FTMS 0 0 0 17322 42629.73828125 0.10899845429565182 10 -0.26525115966796875 6 Unmodified _VYAVVRGLFL_ ENSG00000138111|ENST00000238936|MFSD13A 17.11289562659939 0.35104376501799556 2 {M(Oxidation (M))|F}{I|L} 2 8 21.454 0 0 1.8891 0 0 857.5125033264928 0 857.5125033264928 0 5.255762612236907 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 1.8891 + + 57 NaN NaN 115880.8 NaN 13691 3635 17322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17330 73.531 NaN 716440 35 0 86421 0.327 + -1 KKIFANMIW 9 102 583.8227816736686 1165.631010414137 2 584.8053588867188 MULTI HCD FTMS 0 0 0 17329 54587.41015625 1 0 0 1 Oxidation (M) _KKIFANM(Oxidation (M))IW_ REV__ENST00000316423.10_1_4:39505568-39506095:-|nuORF 11.640296217721598 0.25978676193971967 2 VAE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}W 8 -1 41.292 0 0 3.5424 0 0 209.12113600183085 0 209.12113600183085 0 13.796284849694722 0 0 0 0.7302046884880937 0 0 0 VAE{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}W 3.5424 - 1431 + NaN NaN 188477 NaN 13692 3636 17329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17331 73.535 NaN 925640 35 0 84374 0.261 + 4817 EYVRALFDF 9 93 580.2925824179385 1158.570611902677 2 580.2923583984375 MULTI HCD FTMS 0 0 0 17329 232415.015625 0.6358181397878566 -3 0.08507537841796875 2 Unmodified _EYVRALFDF_ ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK 90.13494162714682 0.004522430935000059 2 YYT{I|L}AR[EP]{M(Oxidation (M))|F} 9 6 + 59.833 0 0 5.1644 5.1644 84.52 0 0 0 4.717714524193113 12.499475224671329 4.717714524193113 4.717714524193113 0 1.4247425010840047 1.5228787452803376 0.8807196863200843 0 YYT{I|L}AR[EP]{M(Oxidation (M))|F};[YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[KQ]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}[KQ]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YY{I|L}TAR[EP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][KQ]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYT{I|L}[HT][KS]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}T][RV]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}[KQ]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[SA]|[TG]}[KQ]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.1644;4.7572;4.3917;3.9563;3.6061;3.5969;3.3803;3.1619;3.1615;2.9276 -;+;-;-;-;-;-;-;-;- + 1085 NaN NaN 233749.5 NaN 13693 3636 17329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17332 73.539 NaN 166330 35 0 18429 0.262 -1 MPDIDFNL 8 52 490.72336151393813 979.4321700946763 2 490.7236328125 MULTI HCD FTMS 0 0 0 17329 61061.19140625 0.5322702931376658 6 -0.150634765625 3 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 15.847184025352803 0.47719562709667024 2 D{M(Oxidation (M))|F}N{I|L} 4 -1 36.186 0 0 3.6946 0 0 472.1996021955094 0 472.1996021955094 0 28.113656638992737 0 0 0 0.4247425010840047 0 0 0 D{M(Oxidation (M))|F}N{I|L} 3.6946 + + 37 NaN NaN 113358.6 NaN 13694 3636 17329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17333 73.542 NaN 162890 35 0 24829 0.261 + 23325 RISLPLPNF 9 45 528.8138131907656 1055.613073448331 2 528.8139038085938 MULTI HCD FTMS 0 0 0 17329 49297.4765625 0.03908620540138751 24 -0.6330184936523438 4 Unmodified _RISLPLPNF_ ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F} 1 8 18.227 0 0 1.7267 0 0 890.5340614627827 0 890.5340614627827 0 8.305300040193016 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.7267 + + 25 + NaN NaN 123209.5 NaN 13695 3636 17329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17334 73.545 NaN 88212 35 0 5379.3 0.261 + 14391 LEHLDFVL 8 38 493.2713928222656 NaN 0 493.2713928222656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LEHLDFVL_ REV__ENST00000531443.5_1_8:107696561-107715155:+|nuORF 4.75600775471527 0.38822285293237185 2 H 1 -1 6.9897 0 0 0.70995 0 0 605.3434458966814 239.10401331119377 844.4474592078751 0 0 0 0 0 0 0 0 0 H 0.70995 + + 1 + NaN NaN 100978.7 NaN 13696 3636 17329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17336 73.55 NaN 6081400 35 0 700600 0.327 + 3760 ENRQFEQIS 9 104 575.7790808213467 1149.5436087094934 2 575.79248046875 MULTI HCD FTMS 0 0 0 17335 705356.1875 0.9884880030739767 -2 0.04235076904296875 1 Unmodified _ENRQFEQIS_ REV__ENSG00000061987|ENST00000393630|MON2;REV__ENST00000547095.5_1_12:62864501-62986526:+|nuORF;REV__ENST00000551307.5_1_12:62954224-62986526:+|nuORF;REV__nc|ENSG00000061987|Q7Z3U7-2|MON2;REV__nc|ENSG00000061987|Q7Z3U7-3|MON2;REV__nc|ENSG00000061987|Q7Z3U7-5|MON2;REV__nc|ENSG00000061987|Q7Z3U7-6|MON2 32.30548876998284 0.10066689432505688 2 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 -1 51.737 0 0 4.5006 0 0 0 128.04529510900844 128.04529510900844 -0.09064973217870431 0 -0.09064973217870431 0 0 0.3494850021680094 1.0969100130080565 1.3116042352767734 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.5006 - 10399 NaN NaN 445507.5 NaN 13697 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17337 73.555 NaN 3570600 35 0 469560 0.261 + 32171 VYSQFITQL 9 139 549.795283879968 1097.576014826736 2 549.8134155273438 MULTI HCD FTMS 0 0 0 17335 853409.25 0.856200409823499 1 -0.03958892822265625 2 Unmodified _VYSQFITQL_ ENSG00000113522|ENST00000378823|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-2|RAD50;nc|ENSG00000113522|Q92878-3|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant 97.74103586103693 0.004323122048066454 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YG]{M(Oxidation (M))|F}{I|L}TQ{I|L} 9 4 + 57.078 0 0 5.2004 5.2004 62.604 0 0 0 4.779733176347484 9.929724091777615 4.779733176347484 0 0 1.5044321917401078 0 1.5541134294324128 0.6861818737241735 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YG]{M(Oxidation (M))|F}{I|L}TQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YG]{M(Oxidation (M))|F}{I|L}TK{I|L};{NN|[MP]|[D{I|L}]|[EV]}H{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}TK{I|L};{[TV]|[{I|L}S]}[YN]{M(Oxidation (M))|F}{I|L}TK{I|L};{[TV]|[{I|L}S]}[YN]{M(Oxidation (M))|F}{I|L}TQ{I|L};[KG][YE]{M(Oxidation (M))|F}{I|L}TK{I|L};[KG][YE]{M(Oxidation (M))|F}{I|L}TQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YG]{M(Oxidation (M))|F}{I|L}T[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{[{M(Oxidation (M))|F}C]|[YS]}VEK{I|L};{NN|[MP]|[D{I|L}]|[EV]}VP{[CP]|[EA]}{I|L}TQ{I|L} 5.2004;5.2004;4.7649;4.6086;4.6086;4.5793;4.5793;4.3615;4.2957;4.2885 -;-;-;-;-;-;-;-;-;- 9277 NaN NaN 631125 NaN 13698 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17338 73.558 NaN 2220000 35 0 366140 0.261 + 1194 AYLKAIVLF 9 93 519.3232549024 1036.6319568715999 2 519.3234252929688 MULTI HCD FTMS 0 0 0 17335 632220.875 0.10553525574094004 -5 0.13404083251953125 3 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 83.299 0 0 8.0355 8.0355 90.767 0 0 0 13.606793212413777 56.22023059209623 13.606793212413777 8.010299956639813 0 3.1237125054200234 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[{I|L}V]A{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[{I|L}V]A{M(Oxidation (M))|F}{I|L};[K{I|L}]YAA{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}V]AK[{M(Oxidation (M))|F}T]V{I|L}{M(Oxidation (M))|F};[K{I|L}]YAA{I|L}V{M(Oxidation (M))|F}{I|L};[K{I|L}]YAA{I|L}{I|L}V{M(Oxidation (M))|F};[{I|L}V]A{I|L}KYA{I|L}{M(Oxidation (M))|F} 8.0355;7.2628;7.0929;5.6976;4.9249;4.8265;4.156;4.0537;3.8839;3.6907 +;-;-;-;-;-;-;-;-;- + 462 NaN NaN 426845 NaN 13699 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17339 73.562 NaN 994990 35 0 356960 0.262 + 25620 SGHGGHHH 8 59 413.1784380766845 NaN 0 413.1934509277344 PEAK HCD FTMS 0 0 0 17335 17741.298828125 0.32901717531053726 -14 0.32157135009765625 4 Unmodified _SGHGGHHH_ REV__ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;REV__ENSG00000134909|ENST00000682385|ARHGAP32;REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32;REV__nc|ENSG00000134909|A7KAX9|ARHGAP32 2.577480529830294 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.66532 0 0 238.02269538989395 423.27207914817893 661.2947745380729 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.66532 - 10 + NaN NaN 231673.3 NaN 13700 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17340 73.565 NaN 414130 35 0 66410 0.261 + 7523 FWVGFVLLW 9 84 583.8227816736686 1165.631010414137 2 583.8231201171875 MULTI HCD FTMS 0 0 0 17335 127448.9609375 0.5513864404932721 1 -0.03958892822265625 5 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 28.173230860318316 0.11963627304438548 2 T{M(Oxidation (M))|F}{I|L}{I|L}{I|L}W 6 5 57.409 0 0 4.9252 0 0 374.1806812970719 0 374.1806812970719 0 19.030899869919438 0 0 0 1.3252574989159953 0 0 0 T{M(Oxidation (M))|F}{I|L}{I|L}{I|L}W 4.9252 - 810 NaN NaN 165737.3 NaN 13701 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17341 73.568 NaN 376550 35 0 48704 0.261 + 29536 TYVYMCHVGV 10 77 586.2675906843824 1170.5206284355647 2 586.2679443359375 MULTI HCD FTMS 0 0 0 17335 157977.84375 0.20243887358682375 7 -0.1901092529296875 6 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 26.88365393820708 0.25965138844209146 2 [YT]VY{M(Oxidation (M))|F}TN 7 5 64.474 0 0 5.5081 0 0 0 279.0970553033813 279.0970553033813 47.39532286990432 0 0 0 0 1.9291746928241125 2 0 0.2742275032520141 [YT]VY{M(Oxidation (M))|F}TN 5.5081 - 245 + NaN NaN 148901.7 NaN 13702 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17342 73.572 NaN 338920 35 0 98429 0.261 + -1 NYLKGHPMTAQ 11 52 638.3114203897948 1274.6082878463894 2 638.3114013671875 MULTI HCD FTMS 0 0 0 17335 166545.828125 0.7940741092814951 1 -0.03958892822265625 7 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 20.41453444215458 0.279209903849948 2 [YN]{I|L} 3 -1 44.749 0 0 3.5108 0 0 0 881.3955151967479 881.3955151967479 18.239087409443187 0 0 0 0 1 1.6989700043360187 0 0.7302046884880937 [YN]{I|L} 3.5108 + + 72 NaN NaN 145425 NaN 13703 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17343 73.575 NaN 599690 35 0 71662 0.263 -1 MPMNVADLI 9 88 510.2479209569803 1018.4812889807606 2 510.2479248046875 MULTI HCD FTMS 0 0 0 17335 176828.328125 0.6015705241094114 -2 0.04235076904296875 8 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 43.85829265575387 0.04763305254408404 2 {[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PAD{I|L}{I|L} 9 -1 + 61.44 0 0 6.0326 6.0326 86.151 0 0 0 5.318335879332636 13.018995384333593 5.318335879332636 5.318335879332636 0 1.5 0 0.28872548999643577 0.3252574989159953 {[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[C(Carbamidomethyl (C))E]|[WC]}AD{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PW{I|L}{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AD{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QS]|[NT]}PW{I|L}{I|L};{[TV]|[{I|L}S]}[C(Carbamidomethyl (C))M]PAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[C(Carbamidomethyl (C))E]|[WC]}W{I|L}{I|L};YM{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AD{I|L}{I|L};{I|L}[{M(Oxidation (M))|F}V]AP{M(Oxidation (M))|F}YY;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}[DV]{I|L} 6.0326;5.5104;4.9056;4.7543;4.4435;4.4184;4.3834;4.3805;3.3986;3.2738 -;-;-;-;-;-;-;-;-;- 1128 NaN NaN 173093.8 NaN 13704 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17344 73.578 NaN 698980 35 0 146320 0.261 + 18698 MYPYIFHVL 9 87 599.802014717547 1197.5894765018938 2 599.8023681640625 MULTI HCD FTMS 0 0 0 17335 178859.625 0.20804419465363336 -8 0.18880462646484375 9 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 93.76273176245871 0.004427368897683185 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 58.84 0 0 4.9132 4.9132 91.12 0 0 0 5.6424927368725974 29.352190335775745 5.6424927368725974 42.69585969540586 0 2.1549471895720984 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C)){I|L}[Q{I|L}][Y{M(Oxidation (M))|F}]{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C)){I|L}[K{I|L}][Y{M(Oxidation (M))|F}]{I|L} 4.9132;1.348;1.348 +;-;- + 480 NaN NaN 206219 NaN 13705 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17345 73.582 NaN 182660 35 0 14644 0.261 + 30078 VFTLKPLEF 9 55 547.3185459207689 1092.6225389083377 2 547.3187866210938 MULTI HCD FTMS 0 0 0 17335 65917.5625 0.07385542856282534 12 -0.31758880615234375 10 Unmodified _VFTLKPLEF_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 55.50274090549119 0.023872834264864425 2 K{I|L}TEV 5 7 53.443 0 0 4.8913 0 0 504.2581223907995 0 504.2581223907995 0 27.870156338638594 0 0 0 1.4247425010840047 0 0.4247425010840047 0 K{I|L}TEV 4.8913 - 63 NaN NaN 112770.3 NaN 13706 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17346 73.585 NaN 221750 35 0 29109 0.261 + 18621 MWWESLLF 8 57 556.2693493321453 NaN 0 556.2880859375 PEAK HCD FTMS 0 0 0 17335 16794.6015625 0.4210055364826199 3 -0.0886688232421875 11 Unmodified _MWWESLLF_ SLC24A2|p.L269F|1|0.27|ENSG00000155886|chr9:19786062-19786062|G/A|missense_variant 10.183394434864962 0.38822285293237185 2 VE 2 7 10.261 0 0 0.92396 0 0 131.05942271238274 748.3294771783811 879.3888998907639 0 0 0 0 0 0 0 0.3807196863200844 0 VE 0.92396 - 30 + NaN NaN 119870.7 NaN 13707 3637 17335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17348 73.59 NaN 1476900 35 0 202990 0.327 + 35729 YYLNEIQSF 9 91 588.7821771061409 1175.5498012790817 2 588.7824096679688 MULTI HCD FTMS 0 0 0 17347 833576.625 0.684636658491753 2 -0.04907989501953125 1 Unmodified _YYLNEIQSF_ ENSG00000160284|ENST00000291672|SPATC1L;nc|ENSG00000160284|Q9H0A9-2|SPATC1L 216.56568483796636 8.600418336565962E-24 2 YY{I|L}NE{I|L}QS{M(Oxidation (M))|F} 9 0 + 133 0 0 11.314 11.314 93.954 0 0 0 2.6893017848452985 2.6893017848452985 2.6893017848452985 9.208187539523735 0 3.3807196863200843 1.6989700043360187 1.3684151806525389 1.5669015600442577 + + YY{I|L}NE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}TN{M(Oxidation (M))|F};YY{I|L}N{I|L}EQS{M(Oxidation (M))|F};YY{I|L}GGE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GG{I|L}EQS{M(Oxidation (M))|F};YY{I|L}NE{I|L}TGG{M(Oxidation (M))|F};YY{I|L}GGE{I|L}TN{M(Oxidation (M))|F};YY{I|L}N{I|L}E[AG]S{M(Oxidation (M))|F} 11.314;10.531;10.503;9.5113;9.4559;9.2252;8.9688;8.728;8.7003;8.6726 +;-;-;-;-;-;-;-;-;- + 2580 NaN NaN 321539.7 NaN 13708 3638 17347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17349 73.594 NaN 1722400 35 0 157400 0.261 + 29991 VFIVVTLPSF 10 119 561.3339042716717 1120.6532556101433 2 561.3214111328125 MULTI HCD FTMS 0 0 0 17347 20265.736328125 0.04649451977088831 -7 0.18633270263671875 2 Unmodified _VFIVVTLPSF_ REV__ENSG00000138600|ENST00000261854|SPPL2A;REV__ENST00000559527.1_1_15:51023229-51039693:-|nuORF;REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant 16.942295170755138 0.35263950412107176 2 TPV{M(Oxidation (M))|F}{I|L}{I|L}[PS]T 9 -1 61.754 0 0 5.5105 0 0 0 162.0560701959594 162.0560701959594 23.172267601653274 0 0 0 0 0 1.3010299956639813 1.0149705333130703 0 TPV{M(Oxidation (M))|F}{I|L}{I|L}[PS]T 5.5105 - 5113 + NaN NaN 360568.6 NaN 13709 3638 17347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17350 73.598 NaN 429750 35 0 31765 0.261 + 21716 QADPFLGLAM 10 85 539.7662964175745 1077.518039901949 2 539.765625 MULTI HCD FTMS 0 0 0 17347 116727.5625 1 0 0 3 Oxidation (M) _QADPFLGLAM(Oxidation (M))_ ENSG00000180739|ENST00000333430|S1PR5 60.07390631473393 0.04115296186411585 2 Y{I|L}G{I|L}A{M(Oxidation (M))|F} 6 5 58.981 0 0 5.4738 0 0 395.19859517714264 0 395.19859517714264 0 38.06551964076089 0 0 0 2.2059771852360797 0 0 0 Y{I|L}G{I|L}A{M(Oxidation (M))|F} 5.4738 - 1101 + NaN NaN 159130.5 NaN 13710 3638 17347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17351 73.601 NaN 611930 35 0 66603 0.261 + 19916 NYFLWTEKF 9 78 624.3085444421353 1246.6025359510704 2 624.3086547851562 MULTI HCD FTMS 0 0 0 17347 244712.53125 0.3884141704391399 -4 0.1180572509765625 4 Unmodified _NYFLWTEKF_ ENSG00000100351|ENST00000344138|GRAP2 132.37960578797484 0.0004606598083464779 2 [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 9 0 + 121.54 0 0 9.7496 9.7496 98.204 0 0 0 32.90221594415691 16.478174818886373 16.478174818886373 39.055781609639766 0 2.7302046884880937 2 0.805462187404089 2.059894379144197 + + [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}W{[CA]|SS}[{I|L}A]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}AEK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[WY]{M(Oxidation (M))|F}AEK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{I|L}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[{M(Oxidation (M))|F}H]|[RQ]}H{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}K{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YN];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[HS];{[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L}[HN]K{M(Oxidation (M))|F} 9.7496;6.6166;3.6519;3.1279;2.6106;1.627;1.4289;1.0094;0.17049 +;-;-;-;-;-;-;-;- + 1088 NaN NaN 180425.5 NaN 13711 3638 17347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17353 73.606 NaN 2794700 35 0 433490 0.326 + 24262 RYFLPPYTF 9 96 602.3135033827217 1202.6124538322433 2 602.3136596679688 MULTI HCD FTMS 0 0 0 17352 1049471.5 0.11987215649983443 23 -0.6166610717773438 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 88.95385435242217 0.004553379958619559 2 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 10 7 74.945 0 0 6.2319 0 0 0 60.99104213882871 60.99104213882871 53.4568378181978 0 0 0 0 1.9247425010840047 1.6989700043360187 1.860924374808178 0 YY{I|L}SP{I|L}{[TV]|[{I|L}S]}TT 6.2319 - 1309 NaN NaN 521835.6 NaN 13712 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17354 73.61 NaN 1869600 35 0 95348 0.261 + 11563 IYSRYFFSF 9 123 615.3033123343973 1228.5920717355946 2 615.3037109375 MULTI HCD FTMS 0 0 0 17352 399604.4375 0.6166930242391927 3 -0.0753021240234375 2 Unmodified _IYSRYFFSF_ ENSG00000137975|ENST00000370565|CLCA2 78.61045856554632 0.006302010232588203 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 10 6 + 83.161 0 0 6.7688 6.7688 85.262 0 0 0 0.0649873629158293 5.616548952625152 0.0649873629158293 0.0649873629158293 0 1 1.3010299956639813 1.2059771852360797 0.9674165578762486 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YN]AWV[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]PS{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRSY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWV[{M(Oxidation (M))|F}V]PS{M(Oxidation (M))|F};{I|L}YSRY{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[NV]|[RG]}VWPS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWV[VP]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{I|L}YRYS{M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 6.7688;6.7635;6.3565;6.3116;6.2722;6.1583;5.9855;5.4762;5.2354;5.2075 -;-;-;-;-;-;+;-;-;- + 22490 NaN NaN 383444.7 NaN 13713 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17355 73.614 NaN 504170 35 0 34369 0.262 + 5769 FPAHILDCL 9 79 514.7650941766512 1027.5156354201024 2 514.7654418945312 MULTI HCD FTMS 0 0 0 17352 310554 0.20640049288241505 9 -0.23564910888671875 3 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 117.59872219059416 0.0017018906413822257 2 {I|L}MHA{I|L}{I|L}D 7 6 75.176 0 0 7.3163 0 0 0 231.08075891666252 231.08075891666252 41.44724530129331 0 0 0 0 1.8807196863200843 1.0969100130080565 1.5994850021680094 0 {I|L}MHA{I|L}{I|L}D 7.3163 - 614 + NaN NaN 161825.6 NaN 13714 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17356 73.617 NaN 631170 35 0 72374 0.261 + 27340 SYRIIYNLF 9 77 594.8243265699288 1187.6341002066574 2 594.82421875 MULTI HCD FTMS 0 0 0 17352 248226.375 0.22632824069119428 7 -0.17993927001953125 4 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 65.47368725323818 0.010552856507075443 2 {I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 6 3 66.331 0 0 5.5851 0 0 406.19690369699924 0 406.19690369699924 0 47.80130979747198 0 0 0 2.1549471895720984 0 0 0.7614393726401688 + {I|L}{I|L}YN{I|L}{M(Oxidation (M))|F} 5.5851 + + 327 NaN NaN 187531.9 NaN 13715 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17357 73.621 NaN 936110 35 0 121720 0.261 + 1204 AYLKFLDQF 9 85 572.805848329664 1143.5971437261278 2 572.8067016601562 MULTI HCD FTMS 0 0 0 17352 277463.9375 0.2946044673150931 -4 0.09814453125 5 Unmodified _AYLKFLDQF_ ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2 157.7952019732125 5.857147217999733E-07 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F} 9 0 + 105.64 0 0 9.2375 9.2375 93.591 0 0 0 2.041900319064581 75.71842196392844 2.041900319064581 9.208187539523749 0 3.2302046884880937 2 0 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}E]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[PA][KT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}K{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[PA]{M(Oxidation (M))|F}[KT]S{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}K{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}K{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]N{I|L}K{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9.2375;8.4323;6.5495;5.4318;4.0316;3.7063;3.6836;3.6323;3.2151;2.9541 +;-;-;-;-;-;-;-;-;- + 1020 NaN NaN 235326.4 NaN 13716 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17358 73.624 NaN 347300 35 0 30087 0.261 + 12874 KYFPYLVL 8 62 521.8024241701842 1041.5902954071682 2 521.8020629882812 MULTI HCD FTMS 0 0 0 17352 91771.7890625 1 0 0 6 Unmodified _KYFPYLVL_ ENSG00000136802|ENST00000372600|LRRC8A;ENSG00000171488|ENST00000370454|LRRC8C 19.438996006549623 0.45076845602799126 2 V{I|L} 2 6 25.217 0 0 2.421 0 0 811.4272363454836 0 811.4272363454836 0 9.731975075880328 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.421 + + 47 NaN NaN 137420.4 NaN 13717 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17359 73.627 NaN 245340 35 0 19269 0.261 + 19141 NGDKIDVEKL 10 81 565.8070841344947 1129.5996153357894 2 565.8071899414062 MULTI HCD FTMS 0 0 0 17352 48214.984375 0.4870874261567276 -3 0.0753326416015625 7 Unmodified _NGDKIDVEKL_ tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1 17.44264345198275 0.3479594151168503 2 [YN]HD{I|L}VE 7 6 33.192 0 0 2.9384 0 0 0 256.16672693424067 256.16672693424067 11.66463859409312 0 0 0 0 0.6861818737241735 1.3979400086720375 0 0 [YN]HD{I|L}VE 2.9384 - 687 + NaN NaN 135037.2 NaN 13718 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17360 73.631 NaN 168930 35 0 26241 0.261 + 35807 YYPEYKLLF 9 57 618.3213835604442 1234.6282141876884 2 618.3214721679688 MULTI HCD FTMS 0 0 0 17352 32523.4140625 0.30475636969089936 7 -0.17993927001953125 8 Unmodified _YYPEYKLLF_ ENSG00000159720|ENST00000290949|ATP6V0D1 10.073929032068715 0.27331982688540024 2 {I|L} 1 8 3.0989 0 0 0.251 0 0 655.3104784472572 463.20697961978755 1118.5174580670448 0 0 0 0 0 0 0 0 0 + {I|L} 0.251 + + 10 + NaN NaN 114333 NaN 13719 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17361 73.634 NaN 128030 35 0 17209 0.263 + 30103 VFVVDSAAF 9 53 477.7503257105663 953.4860984879326 2 477.75079345703125 MULTI HCD FTMS 0 0 0 17352 15475.87890625 0.24539971352251172 -1 0.016204833984375 9 Unmodified _VFVVDSAAF_ ENSG00000144867|ENST00000678299|SRPRB 54.773552608820026 0.024892918755467567 2 PVDSAA{M(Oxidation (M))|F} 7 3 63.008 0 0 6.6081 0 0 248.15274245429845 0 248.15274245429845 0 43.5438040893024 0 0 0 2.0669015600442577 0 0.4247425010840047 0 PVDSAA{M(Oxidation (M))|F} 6.6081 - 68 NaN NaN 114386.3 NaN 13720 3639 17352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17363 73.639 NaN 553520 35 0 80890 0.327 + 33994 YLVWLQAGW 9 74 568.3004875316318 1134.5864221300635 2 568.8023681640625 MULTI HCD FTMS 0 0 0 17362 82274.234375 0.6806733682385926 1 -0.02285003662109375 1 Unmodified _YLVWLQAGW_ REV__ENST00000542466.2_1_12:58120098-58120972:+|nuORF 36.04419817259434 0.08350412372117409 2 {I|L}YV{M(Oxidation (M))|F}H[{I|L}T]GW 9 -1 + 91.353 0 0 8.0517 8.0517 94.826 0 0 0 81.66054693457546 14.973024840566467 14.973024840566467 18.622731327798547 0 2.579689690656103 1.6989700043360187 0.3494850021680094 0 {I|L}YV{M(Oxidation (M))|F}H[{I|L}T]GW;[Y{I|L}]V{M(Oxidation (M))|F}H[{I|L}T]GW;{I|L}YV{M(Oxidation (M))|F}H{[NV]|[RG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{I|L}YV{M(Oxidation (M))|F}H{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}T];{I|L}YV{M(Oxidation (M))|F}H[NP][{M(Oxidation (M))|F}V];{I|L}Y[QA]H{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}{M(Oxidation (M))|F}H[{I|L}T]GW;[Y{I|L}]V{M(Oxidation (M))|F}H[VP]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[YV]{I|L}{M(Oxidation (M))|F}H[VP]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[{M(Oxidation (M))|F}D]|MM}{I|L}[RK][{I|L}T]GW 8.0517;6.4103;5.6941;5.584;5.4823;5.0971;4.5979;3.8223;2.0099;1.6165 -;-;-;-;-;-;-;-;-;- 275 + NaN NaN 175588.2 NaN 13721 3640 17362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17364 73.643 NaN 155370 35 0 15489 0.264 + 28806 TTSMHSGS 8 44 404.1696931571729 806.3248333811458 2 404.1698913574219 MULTI HCD FTMS 0 0 0 17362 81875.046875 0.009777737305100698 63 -1.7179641723632812 2 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 2 {I|L}[EP] 3 -1 3.2218 0 0 0.39956 0 0 449.1519032209 0 449.1519032209 0 3.2217847488956526 0 0 0 0 0 0 0 {I|L}[EP] 0.39956 - 1 NaN NaN 117344.9 NaN 13722 3640 17362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17365 73.647 NaN 181240 35 0 49146 0.261 -1 YIICFVPYH 9 44 606.2991118532769 1210.5836707733538 2 606.299560546875 MULTI HCD FTMS 0 0 0 17362 33515.76171875 0.5745779363909996 1 -0.02285003662109375 3 Carbamidomethyl (C) _YIIC(Carbamidomethyl (C))FVPYH_ ENSG00000174946|ENST00000309180|GPR171 9.347437153973935 0.2795965555214564 2 Q{I|L} 2 -1 7.9588 0 0 0.65743 0 0 165.01038083370378 801.4130343072874 966.4234151409912 0 0 0 0 0 0 0 0 0 Q{I|L} 0.65743 - 7 + NaN NaN 116406.8 NaN 13723 3640 17362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17366 73.65 NaN 165120 35 0 14348 0.262 + 14546 LFFYLQAL 8 53 507.78460476124627 1013.5546565892926 2 507.7848815917969 MULTI HCD FTMS 0 0 0 17362 29155.791015625 0.933547191215713 1 -0.02285003662109375 4 Unmodified _LFFYLQAL_ REV__nc|ENSG00000262085|Q8NH06|OR1P1 13.50788311687929 0.4944073034352369 2 QKA{I|L} 4 -1 30.433 0 0 3.0026 0 0 555.2623768537125 0 555.2623768537125 0 29.013067000015216 0 0 0 0.3494850021680094 0 0 0 QKA{I|L} 3.0026 - 59 NaN NaN 122767.5 NaN 13724 3640 17362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17367 73.654 NaN 82830 35 0 7504.7 0.261 + 22195 QLLLEEEI 8 30 493.7740163258826 NaN 0 493.77435302734375 PEAK HCD FTMS 0 0 0 17362 6585.8583984375 0.26166442143687463 1 -0.02285003662109375 5 Unmodified _QLLLEEEI_ REV__ENSG00000131381|ENST00000253699|RBSN 4.75600775471527 0.38822285293237185 2 G 1 -1 5.4846 0 0 0.55651 0 0 510.28984065782146 415.1910494440063 925.4808901018278 0 0 0 0 0 0 0 0 0 G 0.55651 - 1 + NaN NaN 107040.2 NaN 13725 3640 17362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17368 73.657 NaN 69520 35 0 14593 0.261 -1 TKMLMGEVMRE 11 40 452.88064925487504 NaN 0 452.8699951171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _TKM(Oxidation (M))LM(Oxidation (M))GEVMRE_ ENSG00000100554|ENST00000216442|ATP6V1D;ENST00000555335.1_1_14:67815736-67826415:-|nuORF 0.40826533853263924 0.34096201227758716 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96946.6 NaN 13726 3640 17362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17370 73.662 NaN 135770 35 0 18995 0.327 + -1 MTLHSVSFL 9 43 525.7680204690957 1049.5214880049914 2 525.7672119140625 MULTI HCD FTMS 0 0 0 17369 7201.984375 0.04145972871688442 11 -0.29425811767578125 1 Oxidation (M) _M(Oxidation (M))TLHSVSFL_ REV__ENST00000376414.4_1_13:99947594-99947642:-|nuORF 7.289230182591677 0.29575926068275815 2 V{I|L} 2 -1 18.583 0 0 1.7707 0 0 819.3638665159792 0 819.3638665159792 0 2.129843661361406 0 0 0 0 0 0 0 V{I|L} 1.7707 - 33 NaN NaN 100265.2 NaN 13727 3641 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17371 73.666 NaN 99623 35 0 10998 0.262 + 29714 VDGELVVL 8 51 422.24483256100643 842.4751121888129 2 422.2453918457031 MULTI HCD FTMS 0 0 0 17369 25116.828125 0.02719085475670679 11 -0.29425811767578125 2 Unmodified _VDGELVVL_ ENSG00000151655|ENST00000358415|ITIH2;ITIH2|p.N310Tfs*8|1|0.09|ENSG00000151655|chr10:7723505-7723505|C/-|frameshift_variant 9.347437153973935 0.5250182646323369 2 V{I|L} 2 6 30.969 0 0 3.676 0 0 612.3121921222098 0 612.3121921222098 0 26.989700043360187 0 0 0 1 0 0 0 + V{I|L} 3.676 + + 7 + NaN NaN 102035.5 NaN 13728 3641 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17372 73.67 NaN 113560 35 0 8903.3 0.261 + 1032 AYGGAFYAF 9 43 483.7217748289602 965.4289967247204 2 483.72125244140625 MULTI HCD FTMS 0 0 0 17369 8236.7978515625 0.11358886236508423 -4 0.11151885986328125 3 Unmodified _AYGGAFYAF_ ENSG00000126790|ENST00000247194|L3HYPDH;ENST00000527981.1_1_14:59945878-59946064:-|nuORF 36.466142684027034 0.08156716203802528 2 {M(Oxidation (M))|F}YA{M(Oxidation (M))|F} 4 5 49.68 0 0 5.1459 0 0 419.18187866007037 0 419.18187866007037 0 46.18562527100117 0 0 0 1.9247425010840047 0 0 0 + {M(Oxidation (M))|F}YA{M(Oxidation (M))|F} 5.1459 + + 54 + NaN NaN 103061.9 NaN 13729 3641 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17373 73.673 NaN 169630 35 0 14365 0.261 + 354 AHASSKELDFS 11 56 596.2882331748469 1190.5619134164938 2 596.769287109375 MULTI HCD FTMS 0 0 0 17369 12446.7861328125 0.7941327986240648 -1 0.02285003662109375 4 Unmodified _AHASSKELDFS_ ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3 4.897010918128616 0.3974440401582579 2 RHQ[QP] 5 10 13.724 0 0 1.1527 0 0 526.2116566388687 0 526.2116566388687 0 2.296962438796154 0 0 0 0 0 0 0 RHQ[QP] 1.1527 - 126 NaN NaN 116140.7 NaN 13730 3641 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17374 73.676 NaN 110090 35 0 19532 0.261 + 32973 YAPIQNKIL 9 43 530.3134795908805 1058.612406248561 2 530.3131713867188 MULTI HCD FTMS 0 0 0 17369 21928.376953125 0.03109570313902132 -9 0.2455596923828125 5 Unmodified _YAPIQNKIL_ REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1 11.640296217721598 0.25978676193971967 2 KC{I|L}{I|L} 4 -1 29.553 0 0 2.7916 0 0 583.3329334943375 0 583.3329334943375 0 10.70107520596089 0 0 0 0 0 0 0 KC{I|L}{I|L} 2.7916 - 20 NaN NaN 104900.4 NaN 13731 3641 17369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17376 73.681 NaN 3701000 35 0 213180 0.327 + 17771 MELGPPLTLQ 10 130 549.795283879968 1097.576014826736 2 549.8135986328125 MULTI HCD FTMS 0 0 0 17375 173110.015625 0.17367618914685692 6 -0.16034698486328125 1 Unmodified _MELGPPLTLQ_ REV__ENSG00000107159|ENST00000378357|CA9 38.175570920033316 0.1612389583597779 2 PVD{I|L}VE[K{I|L}] 8 -1 52.775 0 0 4.8084 0 0 186.043094855196 0 186.043094855196 0 5.550403715391809 0 0 0 0 0 1.826348700266608 0.23965182871044374 PVD{I|L}VE[K{I|L}] 4.8084 - 8082 + NaN NaN 653598.9 NaN 13732 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17377 73.686 NaN 4802800 35 0 484150 0.261 + 3761 ENRQFEQIS 9 127 575.7790808213467 1149.5436087094934 2 575.7925415039062 MULTI HCD FTMS 0 0 0 17375 525426.4375 0.7363339815696287 3 -0.09180450439453125 2 Unmodified _ENRQFEQIS_ REV__ENSG00000061987|ENST00000393630|MON2;REV__ENST00000547095.5_1_12:62864501-62986526:+|nuORF;REV__ENST00000551307.5_1_12:62954224-62986526:+|nuORF;REV__nc|ENSG00000061987|Q7Z3U7-2|MON2;REV__nc|ENSG00000061987|Q7Z3U7-3|MON2;REV__nc|ENSG00000061987|Q7Z3U7-5|MON2;REV__nc|ENSG00000061987|Q7Z3U7-6|MON2 29.081581746732265 0.1154664336125038 2 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 -1 57.477 0 0 5 0 0 0 128.04438468084064 128.04438468084064 10.760976551054696 0 0 0 0 0.3494850021680094 1.0969100130080565 1.5669015600442577 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 5 - 19702 NaN NaN 830004.6 NaN 13733 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17378 73.689 NaN 680940 35 0 71326 0.261 + 4818 EYVRALFDF 9 84 580.2925824179385 1158.570611902677 2 580.292724609375 MULTI HCD FTMS 0 0 0 17375 224889.046875 0.6152293347235257 3 -0.09180450439453125 3 Unmodified _EYVRALFDF_ ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK 83.42873516780209 0.004742894019233849 2 [YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 66.099 0 0 5.7052 5.7052 90.639 0 0 0 45.744171855527966 16.478174818886373 16.478174818886373 17.231975075880328 0 1.9802046884880937 0 0.8494850021680094 0 + + [YE]VRA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}[KG]A{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}[KQ]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};YYT{I|L}AR[EP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}[KQ]{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE][R{I|L}]G{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE]V{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RN]{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[YE]V[{M(Oxidation (M))|F}E]{I|L}RG{M(Oxidation (M))|F} 5.7052;4.2179;3.8451;3.6727;3.0089;2.8405;2.7718;2.6886;1.5865 +;-;-;-;-;-;-;-;- + 860 + NaN NaN 187294.8 NaN 13734 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17379 73.693 NaN 869730 35 0 61980 0.261 + 19834 NYAWVYYHL 9 102 614.7931119449629 1227.5716709567257 2 614.79296875 MULTI HCD FTMS 0 0 0 17375 147922.265625 0.0023285672992080664 172 -4.040901184082031 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 107.1870275148908 0.00340162908551068 2 [YN]AWVYYH{I|L} 9 0 + 92.901 0 0 7.5679 7.5679 94.08 0 0 0 14.493638290290107 9.3753063169585 9.3753063169585 19.229305280902054 0 2.7887254899964358 1.6989700043360187 0 1.5451140161145327 + + [YN]AWVYYH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYR[SG]{I|L};[YN]AGEV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]A[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]AGEV{[NV]|[RG]}C{M(Oxidation (M))|F}{I|L};[YN]AGEV{[NV]|[RG]}{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWVYYH{I|L} 7.5679;6.0014;5.7763;5.2666;4.6016;4.4748;4.3897;4.3599;4.3127;4.2576 +;-;-;-;-;-;-;-;-;- + 3512 NaN NaN 222794.2 NaN 13735 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17380 73.696 NaN 441810 35 0 52588 0.261 + 32969 YAMKILNKW 9 86 583.8227816736686 1165.631010414137 2 584.805908203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YAMKILNKW_ ENSG00000198752|ENST00000361246|CDC42BPB 8.593279151180031 0.2858735984551981 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{I|L}YH{I|L} 8 5 34.133 0 0 2.9283 0 0 0 126.10632714681209 126.10632714681209 -3.43982018999467 0 -3.43982018999467 0 0 0 1.5228787452803376 0.23965182871044374 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}E{I|L}YH{I|L} 2.9283 - 1017 NaN NaN 156309.2 NaN 13736 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17381 73.699 NaN 317770 35 0 25521 0.261 + 6555 FPLDKSLLL 9 72 523.3180766487468 1044.6216003642935 2 523.3177490234375 MULTI HCD FTMS 0 0 0 17375 112130.546875 0.5255853512488333 -9 0.23571014404296875 6 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 57.72198328787511 0.020768266150574023 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{[TV]|[{I|L}S]}{I|L}{I|L} 9 0 + 58.271 0 0 5.5782 5.5782 92.626 0 0 0 24.76203644159419 37.30233917894273 24.76203644159419 58.27143930902329 0 1.3494850021680094 2 0.6694451763165201 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}DK{[TV]|[{I|L}S]}{I|L}{I|L} 5.5782 + + 119 NaN NaN 153845.5 NaN 13737 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17382 73.703 NaN 214900 35 0 19359 0.261 + 16802 LYDVRTILL 9 69 553.3342957889993 1104.6540386447984 2 553.3345947265625 MULTI HCD FTMS 0 0 0 17375 86592.625 1 0 0 7 Unmodified _LYDVRTILL_ chr20:45813290-45813437|509|10.48|0.62|4.07|+|ENST00000372568|UBE2C,UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C 49.55428908609986 0.03219431099695407 2 [Y{I|L}]DVR{I|L}T{I|L}{I|L} 9 2 + 61.934 0 0 5.6066 5.6066 92.766 0 0 0 21.751736484954378 43.51728122573242 21.751736484954378 61.933656304779916 0 1.4731975075880328 1.6989700043360187 0.3054621874040891 0.3054621874040891 [Y{I|L}]DVR{I|L}T{I|L}{I|L} 5.6066 - 65 NaN NaN 125771.4 NaN 13738 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17383 73.706 NaN 185640 35 0 18457 0.261 -1 VDPFSMNL 8 52 490.72336151393813 979.4321700946763 2 490.7232666015625 MULTI HCD FTMS 0 0 0 17375 81726.5234375 0.7124099544305301 12 -0.32672882080078125 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VDPFSM(Oxidation (M))NL_ ENST00000544619.1_1_12:67699639-67699675:+|nuORF 8.593279151180031 0.5292430274356741 2 {M(Oxidation (M))|F}N{I|L} 3 -1 29.45 0 0 3.0069 0 0 587.2265991045504 0 587.2265991045504 0 14.846368802282015 0 0 0 0 0 0 0.3252574989159953 {M(Oxidation (M))|F}N{I|L} 3.0069 + + 25 NaN NaN 127796.5 NaN 13739 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17384 73.709 NaN 123660 35 0 8624.2 0.261 + 34817 YRFGEGEEKF 10 55 631.2986843731583 1260.5828158131164 2 631.2992553710938 MULTI HCD FTMS 0 0 0 17375 68515.125 1 0 0 9 Unmodified _YRFGEGEEKF_ ENST00000233809.8_2_2:217528903-217529134:+|nuORF 8.751783647060863 0.42897912249790143 2 {M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 7 6 47.752 0 0 3.7881 0 0 291.08519179511876 0 291.08519179511876 0 41.809414362315565 0 0 0 2.1989700043360187 0 0.4247425010840047 0 {M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 3.7881 - 95 NaN NaN 122524.8 NaN 13740 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17385 73.713 NaN 73240 35 0 3810.9 0.261 + 2967 DYYKWTQYL 9 44 640.3034982971039 1278.5924436610078 2 640.3037109375 MULTI HCD FTMS 0 0 0 17375 55806.74609375 1 0 0 10 Unmodified _DYYKWTQYL_ ENSG00000011376|ENST00000645846|LARS2 2.9952420565917617 0.3283108881486655 2 W 1 8 10.044 0 0 0.78558 0 0 569.2503548932328 520.2412203424436 1089.4915752356765 0 0 0 0 0 0.3054621874040891 0 0 0 + W 0.78558 + + 5 + NaN NaN 112602.7 NaN 13741 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17386 73.716 NaN 176710 35 0 56307 0.264 + 20873 PILAEEAVL 9 48 477.77899117453165 953.5434294158633 2 477.7791748046875 MULTI HCD FTMS 0 0 0 17375 52698.6328125 0.08258029825071547 -9 0.23571014404296875 11 Unmodified _PILAEEAVL_ ENSG00000115109|ENST00000263713|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5 23.1484247019978 0.1603590852062899 2 V{I|L} 2 7 25.969 0 0 2.7234 0 0 723.3785567762769 0 723.3785567762769 0 8.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.7234 + + 11 NaN NaN 113306.8 NaN 13742 3642 17375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17388 73.721 NaN 7652200 35 0 1540100 0.327 + 1195 AYLKAIVLF 9 82 519.3232549024 1036.6319568715999 2 519.32373046875 MULTI HCD FTMS 0 0 0 17387 5412315.5 0.9034660559779107 1 -0.0195465087890625 1 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 94.364 0 0 9.1029 9.1029 92.162 0 0 0 13.789850105233299 8.010299956639813 8.010299956639813 8.010299956639813 0 3.2302046884880937 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}AV{I|L}{M(Oxidation (M))|F};[{I|L}A]YKA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}AV{M(Oxidation (M))|F}{I|L};[{I|L}A]YKA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}{M(Oxidation (M))|F}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}A{I|L}V{M(Oxidation (M))|F};[{I|L}A]KYA{I|L}V{I|L}{M(Oxidation (M))|F} 9.1029;8.3302;8.0398;8.0214;7.7726;7.2487;6.9999;6.9767;6.9583;6.9027 +;-;-;-;-;-;-;-;-;- + 972 NaN NaN 611290.1 NaN 13743 3643 17387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17389 73.725 NaN 912060 35 0 335030 0.262 -1 0 54 413.19354773523565 824.3725425372713 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17387 392813.4375 0.3389774974491802 33 -0.890838623046875 2 NaN NaN 2 {I|L} 1 -1 5.8412 0 0 0.70857 0 0 556.1953402441058 152.07171045474846 708.2670506988542 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.70857 - 3 + NaN NaN 232511.5 NaN 13744 3643 17387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17390 73.729 NaN 163030 35 0 30970 0.261 + -1 CILMMIVI 8 42 496.7702433643494 991.5259337954989 2 496.7702331542969 MULTI HCD FTMS 0 0 0 17387 87112.828125 0.31457777436724416 13 -0.3461151123046875 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILMMIVI_ REV__ENSG00000196876|ENST00000627620|SCN8A;REV__nc|ENSG00000196876|Q9UQD0-3|SCN8A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000196876|Q9UQD0|SCN8A 17.086550045450526 0.4680768486079041 2 {I|L}V{I|L} 3 -1 36.198 0 0 3.6507 0 0 648.2790455200995 0 648.2790455200995 0 36.197887582883936 0 0 0 1 0 0 0 {I|L}V{I|L} 3.6507 + + 16 NaN NaN 105458.8 NaN 13745 3643 17387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17391 73.732 NaN 91016 35 0 11673 0.261 -1 TVCSLEELL 9 29 532.2686324146946 1062.522711896189 2 532.2687377929688 MULTI HCD FTMS 0 0 0 17387 29213.14453125 0.5071616419999566 1 -0.0195465087890625 4 Carbamidomethyl (C) _TVC(Carbamidomethyl (C))SLEELL_ ENSG00000198765|ENST00000369522|SYCP1 19.256988751693697 0.19398022840297344 2 EE{I|L}{I|L} 4 -1 45.745 0 0 4.3054 0 0 560.2611561505875 0 560.2611561505875 0 45.74539712336197 0 0 0 1.3807196863200843 0 0 0 EE{I|L}{I|L} 4.3054 + + 12 NaN NaN 98614.7 NaN 13746 3643 17387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17392 73.735 NaN 145050 35 0 15920 0.261 + 32634 WLWQTGLLP 9 59 557.3082757836141 1112.6019986340282 2 557.8109741210938 MULTI HCD FTMS 0 0 0 17387 28607.072265625 0.5082681423268132 10 -0.26123046875 5 Unmodified _WLWQTGLLP_ REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF 5.230669730166228 0.3113646817964458 2 [W{I|L}][HC][TP]VQ 8 -1 12.918 0 0 1.1611 0 0 0 145.09471038623442 145.09471038623442 4.846368802282015 0 0 0 0 0 1.3010299956639813 0.3252574989159953 0 [W{I|L}][HC][TP]VQ 1.1611 - 87 NaN NaN 115012.2 NaN 13747 3643 17387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17394 73.74 NaN 1368100 35 0 252780 0.327 + 24263 RYFLPPYTF 9 79 602.3135033827217 1202.6124538322433 2 602.3137817382812 MULTI HCD FTMS 0 0 0 17393 605144 0.06912042515965018 28 -0.7665176391601562 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 65.23502041540118 0.010630085227462206 2 YY{I|L}SP{I|L}CVVT 10 8 78.999 0 0 6.569 0 0 0 60.99569245044692 60.99569245044692 58.10886448696975 0 0 0 0 1.774227503252014 1.6989700043360187 1.5189301784845295 0 YY{I|L}SP{I|L}CVVT 6.569 - 779 NaN NaN 299649.2 NaN 13748 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17395 73.745 NaN 1201000 35 0 336840 0.261 + 18699 MYPYIFHVL 9 81 599.802014717547 1197.5894765018938 2 599.8021850585938 MULTI HCD FTMS 0 0 0 17393 702879.375 0.8175683780535945 -1 0.0195465087890625 2 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.153 0 0 6.5259 6.5259 88.381 0 0 0 5.6424927368725974 49.10219694675405 5.6424927368725974 8.57840941039747 0 2.6549471895720984 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F}HV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}HV{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[RV]V{M(Oxidation (M))|F}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}V{M(Oxidation (M))|F}Y{I|L};{[QN]|[E{I|L}]|[KN]}C(Carbamidomethyl (C))[RV][Y{M(Oxidation (M))|F}]V{I|L};{[QN]|[E{I|L}]|[KN]}[CG][RV]V{M(Oxidation (M))|F}Y{I|L} 6.5259;5.8096;5.4586;3.0105;1.5908;1.4438;1.2967;1.0454;0.7141;0.52783 +;+;-;-;-;-;-;-;-;- + 782 NaN NaN 273043.8 NaN 13749 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17396 73.748 NaN 655270 35 0 66310 0.261 + 19917 NYFLWTEKF 9 84 624.3085444421353 1246.6025359510704 2 624.3085327148438 MULTI HCD FTMS 0 0 0 17393 441086.71875 0.7001044494120219 2 -0.045623779296875 3 Unmodified _NYFLWTEKF_ ENSG00000100351|ENST00000344138|GRAP2 143.90916361153978 1.5265063399744E-05 2 [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 9 0 + 115.84 0 0 9.2927 9.2927 98.112 0 0 0 20.899028321079953 16.478174818886373 16.478174818886373 46.77108148272637 0 2.7302046884880937 2 1.110924374808178 1.360924374808178 + + [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}[PG]{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}[PG]{I|L}[YN]{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}[PG]{I|L}{M(Oxidation (M))|F}[YN];[YN]{M(Oxidation (M))|F}{I|L}[PG]{I|L}{[TV]|[{I|L}S]}[HS];{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}[YK]EEK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{M(Oxidation (M))|F}{I|L}[YN]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TW{I|L}{M(Oxidation (M))|F}[YN]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T[HA][KQ]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.2927;5.5408;4.6246;4.0004;3.648;3.0553;2.9775;2.3667;2.3667;2.0895 +;-;-;-;-;-;-;-;-;- + 1066 NaN NaN 188575.8 NaN 13750 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17397 73.752 NaN 1515700 35 0 111830 0.261 + 17019 LYIVEPLKF 9 103 561.3339042716717 1120.6532556101433 2 561.334228515625 MULTI HCD FTMS 0 0 0 17393 347187.21875 0.7965317788117643 -1 0.0195465087890625 4 Unmodified _LYIVEPLKF_ ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO 63.960520009940105 0.0120409805053046 2 {I|L}Y{I|L}VE[{I|L}P]K{M(Oxidation (M))|F} 9 0 + 98.184 0 0 8.7613 8.7613 94.028 0 0 0 66.43938964343363 16.478174818886373 16.478174818886373 9.956130378462476 0 2.4802046884880937 1.6989700043360187 0.805462187404089 0.8494850021680094 + + {I|L}Y{I|L}VE[{I|L}P]K{M(Oxidation (M))|F};{I|L}Y{I|L}VEK[{I|L}P]{M(Oxidation (M))|F};[Y{I|L}]{I|L}VE[{I|L}P]K{M(Oxidation (M))|F};{I|L}Y{I|L}V[SG]{I|L}[{I|L}P]{M(Oxidation (M))|F};{I|L}Y{I|L}AA[{I|L}P]{I|L}T{M(Oxidation (M))|F};{I|L}Y{I|L}AAT{I|L}[{I|L}P]{M(Oxidation (M))|F};[Y{I|L}]{I|L}EV[{I|L}P]K{M(Oxidation (M))|F};[Y{I|L}]V{I|L}E[{I|L}P]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}VTP{I|L}VG{M(Oxidation (M))|F};[Y{I|L}]V{I|L}TP{I|L}VG{M(Oxidation (M))|F} 8.7613;7.8729;5.8521;5.5949;5.3477;5.2084;5.093;4.6519;4.3828;3.1825 +;-;+;-;-;-;-;-;-;- + 3898 + NaN NaN 320223 NaN 13751 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17398 73.755 NaN 616670 35 0 53582 0.261 + 35730 YYLNEIQSF 9 75 588.7821771061409 1175.5498012790817 2 588.7825317382812 MULTI HCD FTMS 0 0 0 17393 234412.5625 0.1925287114408819 8 -0.215667724609375 5 Unmodified _YYLNEIQSF_ ENSG00000160284|ENST00000291672|SPATC1L;nc|ENSG00000160284|Q9H0A9-2|SPATC1L 110.5527297667825 0.0028521687250969148 2 YY{I|L}NE{I|L}QS{M(Oxidation (M))|F} 9 0 + 100.46 0 0 8.5454 8.5454 92.832 0 0 0 24.13734275855269 81.08349385648225 24.13734275855269 9.208187539523749 0 2.1549471895720984 1.6989700043360187 0 1.4291746928241125 + + YY{I|L}NE{I|L}QS{M(Oxidation (M))|F};YY{I|L}NE{I|L}[AG]S{M(Oxidation (M))|F};YY{I|L}GGE{I|L}QS{M(Oxidation (M))|F};YY{I|L}GGE{I|L}[AG]S{M(Oxidation (M))|F};[Q{I|L}]AY{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}[HN] 8.5454;7.7621;7.205;5.7667;0.81441 +;-;-;-;- + 837 NaN NaN 185451.2 NaN 13752 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17399 73.758 NaN 372290 35 0 54193 0.261 -1 MPMNVADLI 9 63 510.2479209569803 1018.4812889807606 2 510.24859619140625 MULTI HCD FTMS 0 0 0 17393 107903.7421875 0.36708886765708193 5 -0.12747955322265625 6 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 22.736283301280096 0.1639198954644489 2 {[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PAD{I|L}{I|L} 9 -1 + 61.872 0 0 6.0749 6.0749 89.927 0 0 0 3.65279269351241 25.674100046527357 3.65279269351241 11.478174818886373 0 1.4247425010840047 0 0 0 {[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PAD{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}PW{I|L}{I|L};{I|L}[{M(Oxidation (M))|F}V]AP{M(Oxidation (M))|F}YY;[YT]VY{[QN]|[E{I|L}]|[KN]}[MT];{[MS]|[{M(Oxidation (M))|F}A]}[{I|L}V]P{M(Oxidation (M))|F}YY;{[QD]|[EN]|[WG]|[KD]|[RS]}T{M(Oxidation (M))|F}P[{I|L}V]{[CP]|[EA]};{I|L}[MT]{M(Oxidation (M))|F}HEE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EH{M(Oxidation (M))|F}[DV]{I|L};{I|L}{M(Oxidation (M))|F}E{[RE]|[WV]}YY 6.0749;4.9479;3.6942;2.2439;1.44;1.3897;1.0935;0.77108;0.45977 -;-;-;-;-;-;-;-;- 203 NaN NaN 156103 NaN 13753 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17400 73.762 NaN 674300 35 0 68698 0.261 + 28927 TWTEVSYTF 9 97 567.261167618749 1132.507782304298 2 567.2610473632812 MULTI HCD FTMS 0 0 0 17393 204748.625 0.3247308487555915 -7 0.1901092529296875 7 Unmodified _TWTEVSYTF_ ENSG00000116663|ENST00000376753|FBXO6 100.37149154755038 0.004254194004462789 2 [YE][QP]VSYT{M(Oxidation (M))|F} 9 4 + 75.794 0 0 6.6926 6.6926 90.789 0 0 0 48.23574153251253 7.618766205972591 7.618766205972591 10.707541105245 0 2 1.5228787452803376 0.6462566630072955 0 [YE][QP]VSYT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}P]DSYT{M(Oxidation (M))|F};[YQ][{I|L}P]DSYT{M(Oxidation (M))|F};{[WT]|[RM]}[{I|L}T]DSYT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}P]DSY{M(Oxidation (M))|F}T;[YQ][{I|L}P]DSY{M(Oxidation (M))|F}T;{[WT]|[RM]}[{I|L}T]DSY{M(Oxidation (M))|F}T;[PS]T{[CA]|SS}{M(Oxidation (M))|F}PYT{M(Oxidation (M))|F};N[C(Carbamidomethyl (C))R]SV[QP]SW;{[RE]|[WV]}[SG]HHYT{M(Oxidation (M))|F} 6.6926;5.7471;5.7019;5.4361;4.7312;4.686;4.4202;3.1766;3.0269;2.9495 -;-;-;-;-;-;-;-;-;- 2081 + NaN NaN 193419.5 NaN 13754 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17401 73.765 NaN 169620 35 0 23594 0.261 + -1 NYLKGHPMTAQ 11 46 638.3114203897948 1274.6082878463894 2 638.3109741210938 MULTI HCD FTMS 0 0 0 17393 27295.16015625 0.13014063596058614 8 -0.215667724609375 8 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 7.101721422024254 0.3877749288398915 2 [YN]{I|L} 3 -1 37.447 0 0 2.9379 0 0 0 881.3950059462519 881.3950059462519 33.95242492728684 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L} 2.9379 + + 59 NaN NaN 125588.7 NaN 13755 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17402 73.768 NaN 306630 35 0 12843 0.262 + 22718 QYATLGDYF 9 88 539.2483847019373 NaN 0 539.248291015625 PEAK HCD FTMS 0 0 0 17393 64591.43359375 0.7378485339330576 -4 0.1014404296875 9 Unmodified _QYATLGDYF_ ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 22.736283301280096 0.1690317064107932 2 Y 1 8 14.732 0 0 1.3685 0 0 748.3405366384465 162.05571924381096 910.3962558822574 0 0 0 0 0 0.9247425010840047 0 0 0 + Y 1.3685 + + 471 + NaN NaN 136189.3 NaN 13756 3644 17393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17404 73.773 NaN 1432800 35 0 181950 0.327 + 1205 AYLKFLDQF 9 103 572.805848329664 1143.5971437261278 2 572.805908203125 MULTI HCD FTMS 0 0 0 17403 719041.8125 0.7634611260025154 2 -0.04236602783203125 1 Unmodified _AYLKFLDQF_ ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2 173.68634876852585 1.8204875074637502E-09 2 AY{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F} 9 0 + 146.28 0 0 12.792 12.792 97.557 0 0 0 87.91570352387366 14.973024840566438 14.973024840566438 20.317431287605515 0 3.3494850021680094 2 1.6307196863200843 1.8169015600442577 + + AY{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};AY{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F};AY{I|L}K{M(Oxidation (M))|F}{[MG]|[TS]}[PA]{M(Oxidation (M))|F};AY{I|L}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};AY{I|L}K{[MG]|[TS]}{M(Oxidation (M))|F}[PA]{M(Oxidation (M))|F};[K{I|L}]YA{M(Oxidation (M))|F}{I|L}DQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}N;[K{I|L}]YA{M(Oxidation (M))|F}{I|L}D[AG]{M(Oxidation (M))|F} 12.792;11.015;9.4088;8.6036;8.2165;7.6922;7.0364;5.5786;5.3025;4.7734 +;-;+;-;-;-;-;-;-;- + 2217 + NaN NaN 314819.7 NaN 13757 3645 17403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17405 73.778 NaN 345750 35 0 28827 0.261 + 27341 SYRIIYNLF 9 74 594.8243265699288 1187.6341002066574 2 594.8245239257812 MULTI HCD FTMS 0 0 0 17403 81291.7734375 0.07412034303275199 13 -0.34275054931640625 2 Unmodified _SYRIIYNLF_ ENSG00000163659|ENST00000295924|TIPARP 40.23920728925047 0.06424668180817725 2 GYN{I|L}{M(Oxidation (M))|F} 5 5 55.618 0 0 4.6831 0 0 575.3481922834 0 575.3481922834 0 49.38543111170805 0 0 0 1.3494850021680094 0 0 0.805462187404089 GYN{I|L}{M(Oxidation (M))|F} 4.6831 - 207 NaN NaN 140359.2 NaN 13758 3645 17403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17406 73.781 NaN 159230 35 0 24978 0.261 + 35808 YYPEYKLLF 9 44 618.3213835604442 1234.6282141876884 2 618.3214111328125 MULTI HCD FTMS 0 0 0 17403 24267.337890625 0.22739389485363265 13 -0.34275054931640625 3 Unmodified _YYPEYKLLF_ ENSG00000159720|ENST00000290949|ATP6V0D1 10.073929032068715 0.27331982688540024 2 P 1 8 4.6041 0 0 0.37291 0 0 164.1013109667884 970.4343966119749 1134.5357075787633 0 0 0 0 0 0 0 0 0 + P 0.37291 + + 5 + NaN NaN 116047.2 NaN 13759 3645 17403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17408 73.786 NaN 2503000 35 0 324610 0.327 + 35624 YYIFIPSKF 9 84 589.318133034262 1176.621713135324 2 589.318359375 MULTI HCD FTMS 0 0 0 17407 1297302.75 0.04646627303600091 -6 0.147064208984375 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 92.65332237495696 0.004456439685314431 2 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 87.775 0 0 7.4599 7.4599 87.576 0 0 0 60.687339429602346 16.478174818886373 16.478174818886373 2.4421905028821556 0 2.2302046884880937 1.6989700043360187 1.1254223615525998 0.2614393726401688 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}PKS{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V{I|L}{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F} 7.4599;7.2523;6.0133;5.0404;5.0377;4.5667;4.2657;3.947;3.8296;3.5736 +;-;-;-;-;-;-;-;-;- + 2417 + NaN NaN 482919.2 NaN 13760 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17409 73.79 NaN 334810 35 0 29463 0.261 + 13256 KYMDIEFDF 9 69 604.2704273868659 1206.5263018405317 2 604.270751953125 MULTI HCD FTMS 0 0 0 17407 206069.75 0.09959272629559024 -5 0.12421417236328125 2 Unmodified _KYMDIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 59.368380827593164 0.01846506874148156 2 HD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7 3 60.24 0 0 4.9928 0 0 285.1472340314469 0 285.1472340314469 0 42.05214169069926 0 0 0 2.1549471895720984 0 0.25 0 HD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.9928 - 593 NaN NaN 145261.6 NaN 13761 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17410 73.794 NaN 182430 35 0 12270 0.262 + 5770 FPAHILDCL 9 56 514.7650941766512 1027.5156354201024 2 514.7657470703125 MULTI HCD FTMS 0 0 0 17407 129135.2265625 0.08582589311676016 16 -0.4367218017578125 3 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 57.47134341890925 0.0211188941628804 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{M(Oxidation (M))|F}{I|L} 9 5 + 60.785 0 0 5.9157 5.9157 83.887 0 0 0 7.147642715192504 35.42387417623878 7.147642715192504 0.22878745280337398 0 1.8252574989159953 0 0.8252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}AC{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}PA{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{[WT]|[RM]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{[WT]|[RM]}{I|L}{M(Oxidation (M))|F};[WY]{I|L}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VS]{[WT]|[RM]}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E][VS]{I|L}{[WT]|[RM]}{M(Oxidation (M))|F} 5.9157;5.8935;5.7432;4.9806;4.4871;4.3381;4.3146;3.2701;1.3738;1.2248 -;-;-;-;-;-;-;-;-;- 175 NaN NaN 113010.7 NaN 13762 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17411 73.797 NaN 112010 35 0 16655 0.261 + 22500 QRRLVGKF 8 49 502.3129322010533 1002.6113114689066 2 502.3130187988281 MULTI HCD FTMS 0 0 0 17407 53517.5 0.4084877805310811 1 -0.02953338623046875 4 Unmodified _QRRLVGKF_ REV__nc|ENSG00000058668|P23634-2|ATP2B4;REV__nc|ENSG00000058668|P23634-3|ATP2B4;REV__nc|ENSG00000058668|P23634-4|ATP2B4;REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000058668|P23634-8|ATP2B4;REV__nc|ENSG00000058668|P23634|ATP2B4 5.230669730166228 0.5342319408533849 2 K{M(Oxidation (M))|F} 2 -1 23.271 0 0 2.3211 0 0 709.431932517775 0 709.431932517775 0 16.281446971601312 0 0 0 0.3807196863200844 0 0 0 K{M(Oxidation (M))|F} 2.3211 + + 5 NaN NaN 103602.8 NaN 13763 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17412 73.801 NaN 227040 35 0 16117 0.261 + 34636 YPSDIAVEW 9 66 540.2553779400648 1078.4962029469295 2 540.2555541992188 MULTI HCD FTMS 0 0 0 17407 38483.9140625 0.6345386513187027 1 -0.02953338623046875 5 Unmodified _YPSDIAVEW_ nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211897|P01860|IGHG3 30.636539890814138 0.10832830463492794 2 Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AVEW 7 4 53.081 0 0 4.9218 0 0 187.06314284492345 0 187.06314284492345 0 31.75776156238348 0 0 0 1.8807196863200843 0 0 0.6694451763165201 Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AVEW 4.9218 - 1549 NaN NaN 128152.2 NaN 13764 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17413 73.804 NaN 210250 35 0 42023 0.262 -1 0 48 425.74195773448366 849.4693625357673 2 425.7421569824219 MULTI HCD FTMS 0 0 0 17407 17924.640625 0.08667794741719548 -6 0.147064208984375 6 NaN NaN 2 {I|L} 1 -1 3.9794 0 0 0.46846 0 0 259.1259920297111 474.23627649478755 733.3622685244986 0 0 0 0 0 0 0 0 0 {I|L} 0.46846 - 11 + NaN NaN 117721.9 NaN 13765 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17414 73.807 NaN 146560 35 0 10512 0.261 + 35988 YYYINYTTI 9 49 607.2916313493527 1212.5687097655052 2 607.291748046875 MULTI HCD FTMS 0 0 0 17407 37292.71875 0.8208030563275682 1 -0.02953338623046875 7 Unmodified _YYYINYTTI_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 17.11289562659939 0.2125047172822487 2 YTT{I|L} 4 5 36.414 0 0 3.0031 0 0 716.3173695294937 0 716.3173695294937 0 33.31546893236258 0 0 0 0.9247425010840047 0 0 0 + YTT{I|L} 3.0031 + + 16 NaN NaN 114104.9 NaN 13766 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17415 73.811 NaN 237800 35 0 21250 0.261 + 28064 TGPTRFFLF 9 54 543.2925003454188 1084.5704477576376 2 543.2930908203125 MULTI HCD FTMS 0 0 0 17407 34026.0546875 0.08836929934034297 -4 0.10463714599609375 8 Unmodified _TGPTRFFLF_ ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF 26.268140514670165 0.13340543277302316 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 5 41.938 0 0 3.8668 0 0 512.2684193341812 0 512.2684193341812 0 34.94850021680094 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.8668 + + 30 NaN NaN 131759.4 NaN 13767 3646 17407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17417 73.816 NaN 848020 35 0 322130 0.327 + 23567 RPDSFVLIL 9 50 530.3134795908805 1058.612406248561 2 530.3135375976562 MULTI HCD FTMS 0 0 0 17416 389113.125 0.5517848515812096 -3 0.07515716552734375 1 Unmodified _RPDSFVLIL_ ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1 34.40172386719151 0.0910440009062557 2 V{I|L}{I|L}{I|L} 4 5 44.68 0 0 4.2207 0 0 602.280565330275 0 602.280565330275 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 + V{I|L}{I|L}{I|L} 4.2207 + + 47 NaN NaN 218488 NaN 13768 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17418 73.82 NaN 406410 35 0 44809 0.261 + 29537 TYVYMCHVGV 10 78 586.2675906843824 1170.5206284355647 2 586.2678833007812 MULTI HCD FTMS 0 0 0 17416 50220.6640625 0.06435468684889414 17 -0.4652557373046875 2 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 20.453626601364224 0.3197956946484955 2 [YT]VY{M(Oxidation (M))|F}T 6 5 63.536 0 0 5.428 0 0 0 393.1394137018188 393.1394137018188 58.93151128513031 0 0 0 0 1.9634679910804405 2 0 0 [YT]VY{M(Oxidation (M))|F}T 5.428 - 203 + NaN NaN 150191.2 NaN 13769 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17419 73.823 NaN 467240 35 0 93853 0.262 -1 PLICPMVF 8 62 488.75359326507595 NaN 0 488.7701721191406 PEAK HCD FTMS 0 0 0 17416 6598.08349609375 1 0 0 3 Carbamidomethyl (C) _PLIC(Carbamidomethyl (C))PMVF_ ENST00000588221.5_1_19:9529933-9545487:-|nuORF;ENST00000588933.5_1_19:9529933-9544772:-|nuORF;ENST00000592292.5_1_19:9529933-9546175:-|nuORF 11.114462752807354 0.38822285293237185 2 P{I|L}P{M(Oxidation (M))|F} 4 -1 15.037 0 0 1.5415 0 0 113.0518498642826 405.1947420709594 518.246591935242 0 0 0 0 0 0 0 0 0 P{I|L}P{M(Oxidation (M))|F} 1.5415 - 39 + NaN NaN 157418.7 NaN 13770 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17420 73.827 NaN 163140 35 0 27114 0.261 + 15452 LPDLERLL 8 48 484.7925763630187 967.5705997928375 2 484.79248046875 MULTI HCD FTMS 0 0 0 17416 44783.1328125 0.5245686766234132 -4 0.09470367431640625 4 Unmodified _LPDLERLL_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 26.268140514670165 0.400522237374671 2 {I|L}PD{I|L}E 5 3 51.573 0 0 5.3302 0 0 0 397.2550448053344 397.2550448053344 29.177353201839438 0 0 0 0 0.805462187404089 1.3979400086720375 0.3252574989159953 0 + {I|L}PD{I|L}E 5.3302 + + 150 + NaN NaN 109975.3 NaN 13771 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17421 73.83 NaN 153230 35 0 11904 0.261 -1 LSSGQCGG 8 55 404.1696931571729 806.3248333811458 2 404.1702880859375 MULTI HCD FTMS 0 0 0 17416 90145.3828125 0.010765402965253136 70 -1.8860015869140625 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LSSGQC(Carbamidomethyl (C))GG_ ENST00000476870.5_1_7:100468185-100470922:+|nuORF 4.75600775471527 0.5349361699807423 2 T 1 -1 2.2185 0 0 0.27514 0 0 302.43312303133956 399.82443480127336 702.257557832613 0 0 0 0 0 0 0 0 0 T 0.27514 - 1 + NaN NaN 122479.2 NaN 13772 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17422 73.833 NaN 178020 35 0 14086 0.261 + -1 YYGPHTVME 9 60 556.7376753950587 NaN 0 556.73779296875 PEAK HCD FTMS 0 0 0 17416 9285.2421875 0.16068959195361582 -2 0.04236602783203125 6 Oxidation (M) _YYGPHTVM(Oxidation (M))E_ REV__ENSG00000197226|ENST00000355235|TBC1D9B;REV__nc|ENSG00000197226|Q66K14|TBC1D9B 10.823927491677226 0.2427956001690155 2 EV 2 -1 12.691 0 0 1.1418 0 0 165.04033994851721 715.2805880182249 880.3209279667421 0 0 0 0 0 0.7742275032520141 0 0 0 EV 1.1418 - 35 + NaN NaN 123236.3 NaN 13773 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17423 73.837 NaN 103740 35 0 21899 0.262 -1 NYCTRRCWV 9 41 452.8702858980394 NaN 0 452.8702087402344 PEAK HCD FTMS 0 0 0 17416 17646.0390625 0.6859253449927135 3 -0.08841705322265625 7 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))NYC(Carbamidomethyl (C))TRRC(Carbamidomethyl (C))WV_ chr11:61313706-61314047|125|11.15|0.66|4.09|-|0|DDB1,DDB1|1 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101601.2 NaN 13774 3647 17416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17425 73.842 NaN 2903100 35 0 264810 0.327 + 22094 QHYVFEAKE 9 131 575.7790808213467 1149.5436087094934 2 575.7926635742188 MULTI HCD FTMS 0 0 0 17424 323834.875 0.4538230394618334 9 -0.2613372802734375 1 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 25.399314129420986 0.14091189997036632 2 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 7 50.219 0 0 4.3686 0 0 0 128.04438251912566 128.04438251912566 -0.8756375141266659 0 -0.8756375141266659 0 0 0.3494850021680094 1.0969100130080565 1.2803695511246982 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.3686 - 12981 NaN NaN 531401.7 NaN 13775 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17426 73.846 NaN 967580 35 0 45406 0.261 + 17772 MELGPPLTLQ 10 111 549.795283879968 1097.576014826736 2 549.8135375976562 MULTI HCD FTMS 0 0 0 17424 48616.234375 0.048775238604397926 12 -0.3220367431640625 2 Unmodified _MELGPPLTLQ_ REV__ENSG00000107159|ENST00000378357|CA9 23.789781309258295 0.28859042913526417 2 MKT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}] 9 -1 + 40.952 0 0 3.7312 3.7312 87.422 0 0 0 -0.4559764105883275 2.894929159045901 -0.4559764105883275 14.823937598229687 0 0.5 0 0.5796896906561032 0.7302046884880937 MKT{[{M(Oxidation (M))|F}C]|[YS]}VE[K{I|L}];{[RE]|[WV]}PD{I|L}VE[Q{I|L}];[WP]VD{I|L}VE[Q{I|L}];MWAV{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}G{M(Oxidation (M))|F};MKT{[{M(Oxidation (M))|F}C]|[YS]}V[TA]VV;MKT[RV][QA][HQ];[WP]V[RN]W[Q{I|L}];MRTVK[QA][HQ];MRGKKDV[HQ];MWAVK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{M(Oxidation (M))|F} 3.7312;2.3806;1.9856;1.5816;1.5304;1.5195;1.5179;1.4218;1.3296;1.0539 -;-;-;-;-;-;-;-;-;- 2434 + NaN NaN 248444.9 NaN 13776 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17427 73.85 NaN 537070 35 0 77970 0.261 -1 TPQFPDMIL 9 75 539.2678202098015 1076.5210874864028 2 539.2680053710938 MULTI HCD FTMS 0 0 0 17424 202690.578125 0.030392340792848128 -20 0.5093765258789062 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}[DP]PMN{I|L} 7 -1 40.934 0 0 3.8025 0 0 244.1786366193375 0 244.1786366193375 0 19.252057161061273 0 0 0 1 0 0.6989700043360187 0 {M(Oxidation (M))|F}[DP]PMN{I|L} 3.8025 - 303 NaN NaN 167678.5 NaN 13777 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17428 73.853 NaN 404650 35 0 20448 0.261 + 25846 SLWSLHVSLF 10 82 594.8243265699288 1187.6341002066574 2 594.82275390625 MULTI HCD FTMS 0 0 0 17424 83958.6953125 0.07655199331983213 16 -0.43907928466796875 4 Unmodified _SLWSLHVSLF_ REV__ENSG00000158941|ENST00000308511|CCAR2;REV__nc|ENSG00000158941|Q8N163-2|CCAR2 13.042465956692817 0.38911719078024076 2 S{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F} 7 -1 36.515 0 0 3.0746 0 0 278.22481173185116 0 278.22481173185116 0 12.434560341220617 0 0 0 0.3054621874040891 0 0.3494850021680094 0 S{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F} 3.0746 - 280 + NaN NaN 146343.1 NaN 13778 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17429 73.856 NaN 184940 35 0 23462 0.262 + 27858 TDMWSIGVL 9 53 511.25480385671625 1020.4950547802325 2 511.2550354003906 MULTI HCD FTMS 0 0 0 17424 45455.5078125 0.06392325612259965 46 -1.272979736328125 5 Unmodified _TDMWSIGVL_ ENSG00000164543|ENST00000319357|STK17A 3.944395688203298 0.32111559684428237 2 V{I|L} 2 7 20.969 0 0 2.0548 0 0 790.3360462873062 0 790.3360462873062 0 12.385606273598313 0 0 0 0 0 0 0 + V{I|L} 2.0548 + + 9 NaN NaN 116394.9 NaN 13779 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17430 73.86 NaN 146880 35 0 23622 0.261 + 8409 GYPLWKVTF 9 54 555.8027288416964 1109.5909047501927 2 555.8016967773438 MULTI HCD FTMS 0 0 0 17424 33796.9453125 0.8812394772464074 3 -0.0850372314453125 6 Unmodified _GYPLWKVTF_ ENSG00000198805|ENST00000361505|PNP 8.745405648335112 0.2847203663274469 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 3 7 22.039 0 0 1.9862 0 0 700.426855533199 0 700.426855533199 0 13.086681479559202 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F} 1.9862 - 102 + NaN NaN 117641.8 NaN 13780 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17431 73.863 NaN 149000 35 0 16603 0.261 -1 AYMGFINSF 9 54 533.2391860039202 NaN 0 533.2393798828125 PEAK HCD FTMS 0 0 0 17424 17383.619140625 0.4616772735124178 -2 0.0557098388671875 7 Oxidation (M) _AYM(Oxidation (M))GFINSF_ ENSG00000106484|ENST00000223215|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;nc|ENSG00000106484|Q5EB52-3|MEST 21.74664581756881 0.17567436591797916 2 VH{I|L}Q 4 -1 30.522 0 0 2.8673 0 0 349.10977987464895 235.06430994205314 584.1740898167021 0 0 0 0 0 0.9247425010840047 0 0 0.7742275032520141 VH{I|L}Q 2.8673 - 40 + NaN NaN 120144.8 NaN 13781 3648 17424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17433 73.868 NaN 2119400 35 0 330720 0.327 + 1196 AYLKAIVLF 9 85 519.3232549024 1036.6319568715999 2 519.3234252929688 MULTI HCD FTMS 0 0 0 17432 1357999.25 0.22668786149263856 7 -0.19908905029296875 1 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 86.181 0 0 8.3136 8.3136 91.179 0 0 0 16.248162098248997 69.27993691222191 16.248162098248997 8.010299956639813 0 3.110924374808178 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[{I|L}V]A{I|L}{M(Oxidation (M))|F};[K{I|L}]YAA{I|L}V{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K[{I|L}V]A{M(Oxidation (M))|F}{I|L};[K{I|L}]YAA{I|L}V{M(Oxidation (M))|F}{I|L};[K{I|L}]YAA{I|L}{I|L}V{M(Oxidation (M))|F};[{I|L}V][{I|L}A]KYA{I|L}{M(Oxidation (M))|F};[{I|L}V][KA]{I|L}YA{I|L}{M(Oxidation (M))|F} 8.3136;7.5408;7.323;5.5906;5.2523;4.8179;4.4795;4.2618;3.0558;3.0558 +;-;-;-;-;-;-;-;-;- + 586 NaN NaN 424079 NaN 13782 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17434 73.872 NaN 1218900 35 0 205610 0.261 + 15902 LPLPSDTVL 9 63 477.77899117453165 953.5434294158633 2 477.77899169921875 MULTI HCD FTMS 0 0 0 17432 419197.25 0.6568943458940847 -2 0.0523223876953125 2 Unmodified _LPLPSDTVL_ ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant 50.855029805455786 0.030374663808198754 2 [PS][VP]{[QN]|[E{I|L}]|[KN]}TV{I|L} 9 4 + 46.779 0 0 4.9058 4.9058 89.601 0 0 0 6.3237706491979395 8.063769597598224 6.3237706491979395 19.5505691176296 0 0.3054621874040891 1.5228787452803376 1.1382104921644451 0 [PS][VP]{[QN]|[E{I|L}]|[KN]}TV{I|L};[{I|L}P]{I|L}[PS]DTV{I|L} 4.9058;2.8555 -;+ + 278 NaN NaN 264015.3 NaN 13783 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17435 73.876 NaN 1098800 35 0 399320 0.261 -1 0 57 413.19354773523565 824.3725425372713 2 413.1934509277344 MULTI HCD FTMS 0 0 0 17432 374253.0625 0.3229608624041575 39 -1.0747299194335938 3 NaN NaN 2 {I|L} 1 -1 9.2917 0 0 1.1271 0 0 155.09405240230882 553.1668795221311 708.26093192444 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 1.1271 - 10 + NaN NaN 253294.8 NaN 13784 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17436 73.879 NaN 562070 35 0 48765 0.261 + 19835 NYAWVYYHL 9 93 614.7931119449629 1227.5716709567257 2 614.79296875 MULTI HCD FTMS 0 0 0 17432 142162.09375 0.002237891647308937 179 -4.2545623779296875 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 107.1870275148908 0.00340162908551068 2 [YN]AWVYYH{I|L} 9 0 + 94.391 0 0 7.6892 7.6892 94.66 0 0 0 13.725315038181023 13.725315038181023 13.725315038181023 22.730012720637376 0 2.5 1.6989700043360187 0 1.079689690656103 + + [YN]AWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]KEVYR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYYH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVYR[SG]{I|L};[YN]A[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]AGEV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWVYYH{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGWVYR[SG]{I|L} 7.6892;5.8376;5.5569;5.0381;4.6817;4.2114;3.9637;3.7186;3.3994;3.3657 +;-;-;-;-;-;-;-;-;- + 1918 NaN NaN 173690.5 NaN 13785 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17437 73.882 NaN 223520 35 0 23435 0.262 + 6556 FPLDKSLLL 9 54 523.3180766487468 1044.6216003642935 2 523.3179931640625 MULTI HCD FTMS 0 0 0 17432 104674.859375 0.49063858390757187 -2 0.0523223876953125 5 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 36.506200033944 0.08138327636155518 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}S{I|L}{I|L} 9 2 + 58.879 0 0 5.6364 5.6364 88.943 0 0 0 24.13734275855269 37.90993430065846 24.13734275855269 10.285371682087217 0 1.3807196863200843 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}S{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}RRP{M(Oxidation (M))|F}{I|L} 5.6364;4.6518 -;- 52 NaN NaN 124979.3 NaN 13786 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17438 73.886 NaN 433340 35 0 65475 0.262 -1 YFGRAFCYF 9 72 410.85163855837834 1229.533086275335 3 410.85125732421875 MULTI HCD FTMS 0 0 0 17432 84901.6171875 0.28629971620322464 -2 0.0523223876953125 6 Carbamidomethyl (C) _YFGRAFC(Carbamidomethyl (C))YF_ ENSG00000075073|ENST00000373306|TACR2 2.735195868890462 0.3302822318919627 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.3818 0 0 1064.454165842521 0 1064.454165842521 0 5.563025007672875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3818 + + 23 + NaN NaN 156098.9 NaN 13787 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17439 73.889 NaN 148110 35 0 9917.6 0.261 + 22174 QLACMPLDSW 10 56 582.2668150082134 1162.5190770832266 2 583.25634765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _QLACMPLDSW_ ENST00000505065.1_1_5:130727572-130727803:+|nuORF 6.723162845929126 0.4397169348982109 2 SYT{M(Oxidation (M))|F} 4 9 24.412 0 0 2.1 0 0 646.2989309976616 0 646.2989309976616 0 6.453650195120844 0 0 0 0 0 0 0 SYT{M(Oxidation (M))|F} 2.1 - 83 + NaN NaN 110632.2 NaN 13788 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17440 73.892 NaN 105460 35 0 8013.6 0.262 -1 MPDIDFNL 8 47 490.72336151393813 979.4321700946763 2 490.7231750488281 MULTI HCD FTMS 0 0 0 17432 48181.6015625 0.4199989321677254 19 -0.5209503173828125 8 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 7.289230182591677 0.5311777711368266 2 D{M(Oxidation (M))|F}N{I|L} 4 -1 31.938 0 0 3.2609 0 0 472.19822890449376 0 472.19822890449376 0 17.33410649039925 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}N{I|L} 3.2609 + + 17 NaN NaN 106999.9 NaN 13789 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17441 73.896 NaN 234640 35 0 14170 0.261 + 15182 LMTTMSEFFD 10 53 611.2597885035108 1220.5050240738215 2 611.2595825195312 MULTI HCD FTMS 0 0 0 17432 104041.8203125 0.5941805932742877 -2 0.0523223876953125 9 Unmodified _LMTTMSEFFD_ ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-3|TRIM66 17.11289562659939 0.35104376501799556 2 HM{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 8 6 50.583 0 0 4.1445 0 0 168.07220656562657 0 168.07220656562657 0 43.59366274865181 0 0 0 2.3494850021680094 0 0 0 HM{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.1445 - 59 NaN NaN 125341.5 NaN 13790 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17442 73.899 NaN 268640 35 0 19032 0.261 -1 LDPTMFAEM 9 86 556.7379150390625 NaN 0 556.7379150390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LDPTMFAEM(Oxidation (M))_ ENST00000546632.1_3_12:57917843-57917876:+|nuORF;ENST00000548887.5_3_12:57917843-57918087:+|nuORF 21.74664581756881 0.17567436591797916 2 GV 2 -1 8.0645 0 0 0.72558 0 0 237.05623254288747 715.2779635065061 952.3341960493935 0 0 0 0 0 0.6382104921644451 0 0 0 GV 0.72558 - 73 + NaN NaN 129812.1 NaN 13791 3649 17432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17444 73.904 NaN 1307100 35 0 353070 0.327 + 18700 MYPYIFHVL 9 89 599.802014717547 1197.5894765018938 2 599.8018798828125 MULTI HCD FTMS 0 0 0 17443 721916.6875 0.8397120135858285 5 -0.13686370849609375 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.664 0 0 6.5685 6.5685 88.156 0 0 0 5.6424927368725974 57.492822134202015 5.6424927368725974 7.839322000954283 0 2.7059771852360797 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Y{M(Oxidation (M))|F}]{I|L} 6.5685;5.9139;1.4245;0.42921 +;+;-;- + 524 NaN NaN 285384 NaN 13792 3650 17443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17445 73.908 NaN 323190 35 0 22880 0.264 + 30157 VGVARRPD 8 71 435.2510723915091 868.4875918498183 2 435.2509765625 MULTI HCD FTMS 0 0 0 17443 257691.890625 0.6463698672926351 -4 0.117950439453125 2 Unmodified _VGVARRPD_ REV__ENSG00000107864|ENST00000265997|CPEB3;REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 2.302733041254933 0.5385759549224092 2 V 1 -1 5.9691 0 0 0.6873 0 0 542.2941236875121 224.09772669010002 766.3918503776121 0 0 0 0 0 0.5 0 0 0 V 0.6873 + + 13 + NaN NaN 139774.5 NaN 13793 3650 17443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17446 73.912 NaN 203370 35 0 15303 0.261 + 19918 NYFLWTEKF 9 67 624.3085444421353 1246.6025359510704 2 624.3084716796875 MULTI HCD FTMS 0 0 0 17443 178942.75 0.2840226425770683 8 -0.21196746826171875 3 Unmodified _NYFLWTEKF_ ENSG00000100351|ENST00000344138|GRAP2 61.08992128646608 0.016056751534446034 2 [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F} 9 0 + 71.666 0 0 5.7489 5.7489 90.034 0 0 0 50.69653125057968 8.256886463274284 8.256886463274284 13.455612550363796 0 2.579689690656103 2 0.3807196863200844 0 + + [YN]{M(Oxidation (M))|F}{I|L}WTEK{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}{I|L}WT[VS]A{M(Oxidation (M))|F};[Q{I|L}][HM]{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.7489;4.6695;1.7453 +;-;- + 327 + NaN NaN 132910 NaN 13794 3650 17443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17447 73.915 NaN 341960 35 0 110880 0.263 + 283 AFMEPRYHVRR 11 49 487.92357176731394 1460.7488859021419 3 487.9232177734375 MULTI HCD FTMS 0 0 0 17443 104595.5234375 0.8134458471644529 1 -0.022796630859375 4 Unmodified _AFMEPRYHVRR_ ENSG00000183206|ENST00000358970|POTEC;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH;ENSG00000222036|ENST00000547889|POTEM;ENSG00000230031|ENST00000454856|POTEB2;ENSG00000233917|ENST00000439682|POTEB;ENSG00000278522|ENST00000611217|POTEB3;nc|ENSG00000187537|Q6S5H5-2|POTEG;nc|ENSG00000187537|Q6S5H5-4|POTEG;nc|ENSG00000198062|Q6S545-2|POTEH;nc|ENSG00000278522|A0JP26-2|POTEB3;nc|ENSG00000278522|A0JP26-3|POTEB3 2.6312355333042263 0.4073809613003177 2 PPW{M(Oxidation (M))|F}{[CP]|[EA]} 6 10 39.966 0 0 2.736 0 0 715.3962269513687 0 715.3962269513687 0 35.98644688804811 0 0 0 1.305462187404089 0 0 0 PPW{M(Oxidation (M))|F}{[CP]|[EA]} 2.736 - 37 NaN NaN 140901.8 NaN 13795 3650 17443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17448 73.919 NaN 558050 35 0 48137 0.261 + 8371 GYLHVFYDF 9 94 580.7744817735545 1159.534410613909 2 580.7735595703125 MULTI HCD FTMS 0 0 0 17443 118353.9375 0.5266771265261736 -1 0.03609466552734375 5 Unmodified _GYLHVFYDF_ ENSG00000112769|ENST00000230538|LAMA4;ENST00000519245.1_1_6:112457126-112460429:-|nuORF;nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4 77.98433622928108 0.006504613272346738 2 YD{M(Oxidation (M))|F} 3 6 46.753 0 0 4.032 0 0 716.3651470894366 0 716.3651470894366 0 28.178892198550344 0 0 0 1.5 0 0.7059771852360797 0 + YD{M(Oxidation (M))|F} 4.032 + + 339 + NaN NaN 174594.2 NaN 13796 3650 17443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17449 73.922 NaN 211760 35 0 23971 0.261 + 7540 FYAELYHII 9 67 584.8051488128364 1167.5957446924726 2 584.8062744140625 MULTI HCD FTMS 0 0 0 17443 87138.625 0.07123369838727395 25 -0.6814727783203125 6 Unmodified _FYAELYHII_ ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF 67.34385681178166 0.00994769994983633 2 [Y{M(Oxidation (M))|F}]AE{I|L}YH{I|L}{I|L} 9 0 + 56.929 0 0 4.8757 4.8757 88.627 0 0 0 5.421656121837657 5.421656121837657 5.421656121837657 13.58726483989301 0 2.504432191740108 0 0 0 + + [Y{M(Oxidation (M))|F}]AE{I|L}YH{I|L}{I|L};[Y{I|L}]{[CP]|[EA]}{M(Oxidation (M))|F}YH{I|L}{I|L};[Y{M(Oxidation (M))|F}]AE{I|L}{I|L}{I|L}{[WN]|[YH]};[Y{I|L}]{[CP]|[EA]}{M(Oxidation (M))|F}{I|L}{I|L}{[WN]|[YH]} 4.8757;3.712;1.334;0.63466 +;-;-;- + 255 + NaN NaN 117331.5 NaN 13797 3650 17443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17451 73.927 NaN 32558000 35 0 4534700 0.327 + 35625 YYIFIPSKF 9 93 589.318133034262 1176.621713135324 2 589.3190307617188 MULTI HCD FTMS 0 0 0 17450 27155272 0.9726367134571099 -1 0.022796630859375 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 139.13845188893973 5.0762478717762276E-05 2 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 109.85 0 0 9.3363 9.3363 96.077 0 0 0 14.977861090009469 14.977861090009469 14.977861090009469 16.214986144209703 0 3.024227503252014 1.6989700043360187 1.6056270500406935 0.2742275032520141 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}P{I|L}SK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}P{I|L}SK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};[Y{I|L}]Y{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}PS{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F} 9.3363;7.9582;7.3826;7.176;6.4952;6.435;6.3592;6.254;6.1911;6.1673 +;-;-;-;-;-;-;-;-;- + 4687 + NaN NaN 999792.4 NaN 13798 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17452 73.931 NaN 3448200 35 0 413990 0.261 + 13257 KYMDIEFDF 9 122 604.2704273868659 1206.5263018405317 2 604.270751953125 MULTI HCD FTMS 0 0 0 17450 2069124.5 1 0 0 2 Unmodified _KYMDIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 157.7952019732125 5.857147217999733E-07 2 [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 94.834 0 0 7.8601 7.8601 92.796 0 0 0 10.034897615156865 54.48990414258196 10.034897615156865 10.170729759043752 0 2.774227503252014 0 1.7856668758921828 0.6382104921644451 + + [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}K{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}{M(Oxidation (M))|F}KD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[MD]YK{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}KE{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{[CA]|SS}{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}{I|L}[YN]{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.8601;7.0171;6.9025;6.5155;5.9077;5.8183;5.54;5.3225;5.2342;5.1534 +;-;-;-;-;-;-;-;-;- + 8117 NaN NaN 616433.9 NaN 13799 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17453 73.935 NaN 1196300 35 0 129330 0.261 + 28928 TWTEVSYTF 9 89 567.261167618749 1132.507782304298 2 567.2615356445312 MULTI HCD FTMS 0 0 0 17450 630517.9375 1 0 0 3 Unmodified _TWTEVSYTF_ ENSG00000116663|ENST00000376753|FBXO6 107.99703571036002 0.003269392969029945 2 [YE][QP]VSYT{M(Oxidation (M))|F} 9 4 + 73.183 0 0 6.462 6.462 85.692 0 0 0 2.9500399238539643 5.087418566968154 2.9500399238539643 2.2184874961635614 0 2 1.3979400086720375 0.6861818737241735 0 [YE][QP]VSYT{M(Oxidation (M))|F};[YE]V[QP]SYT{M(Oxidation (M))|F};[YT]{[HG]|PP}{[SA]|[TG]}SYT{M(Oxidation (M))|F};[YQ]V[EP]SYT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}SV[EP]SYT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[VP]AASYT{M(Oxidation (M))|F};[YT]{[HG]|PP}{[SA]|[TG]}SY{M(Oxidation (M))|F}T;[YQ]V[EP]SY{M(Oxidation (M))|F}T;{[CT]|[{M(Oxidation (M))|F}G]}SV[EP]SY{M(Oxidation (M))|F}T;{[YD]|[{M(Oxidation (M))|F}M]}[VP]AASY{M(Oxidation (M))|F}T 6.462;6.2661;6.0128;5.7018;5.6614;5.4608;4.9969;4.6859;4.6455;4.4449 -;-;-;-;-;-;-;-;-;- 2868 + NaN NaN 270568.7 NaN 13800 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17454 73.938 NaN 818970 35 0 46887 0.261 + 144 AEFKEAFSLF 10 101 594.7998756670906 1187.5851984009812 2 594.8004150390625 MULTI HCD FTMS 0 0 0 17450 304233.25 0.9348149596296331 -1 0.022796630859375 4 Unmodified _AEFKEAFSLF_ ENSG00000143933|ENST00000272298|CALM2;ENSG00000160014|ENST00000291295|CALM3;ENSG00000198668|ENST00000356978|CALM1;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF 60.899326713953855 0.038151090291573736 2 {[CP]|[EA]}{M(Oxidation (M))|F}KEA{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F} 10 0 + 74.474 0 0 6.271 6.271 86.179 0 0 0 2.5404627391503 41.531921038531664 2.5404627391503 4.27440017027358 0 2.6237125054200234 0 0.7302046884880937 0 + + {[CP]|[EA]}{M(Oxidation (M))|F}KEA{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[YV]{[NV]|[RG]}EA{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[YV][VG]GEA{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AKEA{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}VTQ{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};{[CP]|[EA]}Q[{I|L}A]Y{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}VTGA{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[YV]{I|L}[DN]A{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[YV][PS]TQ{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F};[YV]{I|L}Q[DG]{M(Oxidation (M))|F}S{I|L}{M(Oxidation (M))|F} 6.271;5.9111;5.6613;5.5783;5.4628;5.3211;5.3049;5.1948;5.1029;5.0643 +;-;-;-;-;-;-;-;-;- + 2288 NaN NaN 217466 NaN 13801 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17455 73.941 NaN 916280 35 0 44713 0.261 + 17020 LYIVEPLKF 9 102 561.3339042716717 1120.6532556101433 2 561.333984375 MULTI HCD FTMS 0 0 0 17450 72686.6796875 0.16676089193564334 6 -0.176300048828125 5 Unmodified _LYIVEPLKF_ ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO 41.8396318013385 0.056899836730939755 2 [Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F} 10 4 + 59.633 0 0 5.3213 5.3213 86.253 0 0 0 30.283963039504428 4.017412290202671 4.017412290202671 8.322646798160562 0 1.1747425010840047 1.5228787452803376 0.2302046884880938 0 [Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{[TV]|[{I|L}S]}{I|L}G{M(Oxidation (M))|F};[Y{I|L}]{I|L}VEK[{I|L}P]{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP[Q{I|L}][Y{I|L}];[Y{I|L}]{I|L}VE[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};VV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KR{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}V[SG]{I|L}[{I|L}P]{M(Oxidation (M))|F};VVV{M(Oxidation (M))|F}{I|L}{I|L}D{I|L}G{M(Oxidation (M))|F};VVV{M(Oxidation (M))|F}{I|L}{I|L}[PS]T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}E[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 5.3213;4.5786;4.5522;3.2615;2.8188;2.4427;2.2816;1.7;1.5753;1.5212 -;-;-;-;+;-;-;-;-;- + 3526 + NaN NaN 227956.2 NaN 13802 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17456 73.944 NaN 636360 35 0 299830 0.262 + -1 FGLKGGCR 8 50 447.7347128838999 893.4548728345998 2 447.73480224609375 MULTI HCD FTMS 0 0 0 17450 132589.21875 1 0 0 6 Carbamidomethyl (C) _FGLKGGC(Carbamidomethyl (C))R_ REV__ENSG00000198911|ENST00000361204|SREBF2;REV__ENST00000424354.5_1_22:42276758-42295397:+|nuORF 9.347437153973935 0.5250182646323369 2 {I|L}W 2 -1 28.711 0 0 3.2135 0 0 576.2800685830027 0 576.2800685830027 0 22.11758134947864 0 0 0 0.7742275032520141 0 0 0 {I|L}W 3.2135 - 21 NaN NaN 183915.9 NaN 13803 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17457 73.948 NaN 250340 35 0 24511 0.261 + 17163 LYLRGLVYL 9 68 555.3399030835634 NaN 0 555.3404541015625 PEAK HCD FTMS 0 0 0 17450 74926.2734375 0.7304337501207163 -3 0.0850372314453125 7 Unmodified _LYLRGLVYL_ ENSG00000105339|ENST00000519811|DENND3;ENST00000520482.1_1_8:142168222-142185717:+|nuORF;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3 28.486842064014134 0.13043271994793734 2 YV 2 7 20.217 0 0 1.8235 0 0 131.09439935471363 712.4158077746478 843.5102071293613 0 0 0 0 0 0.9247425010840047 0 0 0 YV 1.8235 - 39 + NaN NaN 127984.5 NaN 13804 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17458 73.951 NaN 118400 35 0 4653.7 0.261 + -1 LLLWAEHTCL 10 47 628.3274864041327 NaN 0 628.3273315429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _LLLWAEHTC(Carbamidomethyl (C))L_ REV__ENST00000375353.4_1_13:114519114-114519489:+|nuORF 3.5964929083625545 0.337106189561315 2 T 1 -1 11.99 0 0 0.95563 0 0 291.1197422401029 859.4491060846311 1150.568848324734 0 0 0 0 0 0.5 0 0 0 T 0.95563 + + 3 + NaN NaN 108345.8 NaN 13805 3651 17450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17460 73.956 NaN 1185000 35 0 438170 0.327 + 23568 RPDSFVLIL 9 61 530.3134795908805 1058.612406248561 2 530.313720703125 MULTI HCD FTMS 0 0 0 17459 608466.8125 0.8628410306833115 2 -0.0520477294921875 1 Unmodified _RPDSFVLIL_ ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1 32.78568957990786 0.09846250359632436 2 {M(Oxidation (M))|F}V{I|L}{I|L}{I|L} 5 4 49.949 0 0 4.7183 0 0 455.2155018537125 0 455.2155018537125 0 31.163194066948844 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}V{I|L}{I|L}{I|L} 4.7183 + + 58 NaN NaN 266838 NaN 13806 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17461 73.96 NaN 793320 35 0 80400 0.261 + 28065 TGPTRFFLF 9 79 543.2925003454188 1084.5704477576376 2 543.2926025390625 MULTI HCD FTMS 0 0 0 17459 328275.0625 0.8525654099618363 2 -0.0520477294921875 2 Unmodified _TGPTRFFLF_ ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF 53.40400417844725 0.026808823219830042 2 TGPTR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 71.604 0 0 6.6021 6.6021 94.682 0 0 0 63.53199407328319 12.857275935961908 12.857275935961908 71.60396270529162 0 2 0 0 0 + + TGPTR{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.6021 + + 253 + NaN NaN 213924.2 NaN 13807 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17462 73.964 NaN 947030 35 0 39993 0.261 + 17021 LYIVEPLKF 9 101 561.3339042716717 1120.6532556101433 2 561.3162231445312 MULTI HCD FTMS 0 0 0 17459 64767.49609375 0.14859236194949554 7 -0.191497802734375 3 Unmodified _LYIVEPLKF_ ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO 41.8396318013385 0.056899836730939755 2 [Y{I|L}]{I|L}VP{I|L}[VG]T{M(Oxidation (M))|F} 10 4 + 59.508 0 0 5.3101 5.3101 83.059 0 0 0 34.52426706016384 4.597331759979539 4.597331759979539 0.5799194697768684 0 0.9698565171985375 1.6989700043360187 0.23965182871044374 0 [Y{I|L}]{I|L}VP{I|L}[VG]T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}S{I|L}G{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}Q[Y{I|L}];[Y{I|L}]{I|L}VP[YQ]{I|L}{I|L};[Y{I|L}]{I|L}VP{I|L}[AG][Y{I|L}];VV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KR{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VE[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};VVV{M(Oxidation (M))|F}{I|L}{I|L}[PS]T{M(Oxidation (M))|F};VVV{M(Oxidation (M))|F}{I|L}{I|L}D{I|L}G{M(Oxidation (M))|F} 5.3101;5.2583;5.1577;3.9521;3.1304;2.8402;2.1227;2.0835;1.4126;1.2602 -;-;-;-;-;-;-;+;-;- + 2583 + NaN NaN 234418.4 NaN 13808 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17463 73.967 NaN 456630 35 0 115140 0.263 -1 0 57 425.74195773448366 849.4693625357673 2 425.7420959472656 MULTI HCD FTMS 0 0 0 17459 206795.859375 1 0 0 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.5886 0 0 684.3910677133049 0 684.3910677133049 0 1.8908873163884703 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5886 - 102 + NaN NaN 173372.5 NaN 13809 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17464 73.971 NaN 301030 35 0 42762 0.261 + 33539 YIINPIFPQ 9 51 552.8075455163505 1103.600538099501 2 553.31103515625 MULTI HCD FTMS 0 0 0 17459 77310 0.6424269462413562 1 -0.0260162353515625 5 Unmodified _YIINPIFPQ_ REV__ENSG00000149452|ENST00000336232|SLC22A8;REV__nc|ENSG00000149452|Q8TCC7-2|SLC22A8;REV__nc|ENSG00000149452|Q8TCC7-4|SLC22A8;REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8 23.1484247019978 0.1603590852062899 2 [Y{I|L}]{I|L} 3 -1 37.447 0 0 3.3932 0 0 0 711.3463665813159 711.3463665813159 19.488474775526186 0 0 0 0 1 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.3932 + + 70 NaN NaN 136664.9 NaN 13810 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17465 73.974 NaN 144380 35 0 28853 0.261 + -1 MMFAPPLF 8 42 485.2318202423581 968.4490875515162 2 485.2320251464844 MULTI HCD FTMS 0 0 0 17459 84402.4140625 0.5438108801146545 -8 0.215667724609375 6 Oxidation (M) _M(Oxidation (M))MFAPPLF_ REV__ENST00000517490.5_1_8:87570634-87570742:+|nuORF 6.354104778181461 0.5325651638111438 2 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.6815 0 0 690.2862486422146 0 690.2862486422146 0 8.010299956639813 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.6815 - 25 NaN NaN 108541.2 NaN 13811 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17466 73.977 NaN 149520 35 0 10035 0.261 + 5771 FPAHILDCL 9 58 514.7650941766512 1027.5156354201024 2 514.76513671875 MULTI HCD FTMS 0 0 0 17459 78806.28125 0.05237625434620138 22 -0.6032333374023438 7 Unmodified _FPAHILDCL_ ENSG00000173821|ENST00000582970|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 50.855029805455786 0.030374663808198754 2 {M(Oxidation (M))|F}SD{I|L}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F} 8 6 + 52.018 0 0 5.0625 5.0625 85.881 0 0 0 33.16646988486582 10.784678692098275 10.784678692098275 8.34244409179611 0 1.1307196863200843 0 0.8807196863200843 0 {M(Oxidation (M))|F}SD{I|L}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}PA{I|L}{I|L}DC{I|L};{M(Oxidation (M))|F}S{M(Oxidation (M))|F}VV[WP]{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[WT]|[RM]}{M(Oxidation (M))|F};{M(Oxidation (M))|F}PHA{I|L}{I|L}DC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}{I|L}A{M(Oxidation (M))|F}C{I|L} 5.0625;4.2506;2.8659;2.5797;2.5248;2.4206 -;-;-;-;-;- 115 + NaN NaN 112630.3 NaN 13812 3652 17459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17468 73.982 NaN 1732000 35 0 172490 0.327 + 22095 QHYVFEAKE 9 119 575.7790808213467 1149.5436087094934 2 575.7929077148438 MULTI HCD FTMS 0 0 0 17467 227694.4375 0.3190915792957829 14 -0.3838348388671875 1 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 22.736283301280096 0.1639198954644489 2 {I|L}YVT{M(Oxidation (M))|F}Y{I|L}[MT] 9 7 + 52.485 0 0 4.5657 4.5657 82.546 0 0 0 6.766255304493072 0.023307562697723938 0.023307562697723938 1.8933269383026285 0 0.5682503180159344 0.7695510786217261 1.1694451763165201 0 {I|L}YVT{M(Oxidation (M))|F}Y{I|L}[MT];{I|L}YVT{M(Oxidation (M))|F}YP[{M(Oxidation (M))|F}T];{I|L}YVT{M(Oxidation (M))|F}YM[{I|L}T];{I|L}YVT{M(Oxidation (M))|F}YV[{M(Oxidation (M))|F}V];[YT]VY{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};[YT]VY{M(Oxidation (M))|F}{I|L}{I|L}[EC];[YT]VY{M(Oxidation (M))|F}TGG{[QD]|[EN]|[WG]|[KD]|[RS]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TN{[QD]|[EN]|[WG]|[KD]|[RS]};{I|L}YVT{M(Oxidation (M))|F}[TP][Y{M(Oxidation (M))|F}];[YT]VY{M(Oxidation (M))|F}QS{[QD]|[EN]|[WG]|[KD]|[RS]} 4.5657;4.401;4.2196;4.1502;4.1409;3.3483;3.3399;3.2206;3.0356;3.0199 -;-;-;-;-;-;-;-;-;- 16829 + NaN NaN 359714.8 NaN 13813 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17469 73.986 NaN 1614600 35 0 253860 0.261 + 5222 FFDAELSQM 9 84 544.2417306025113 1086.4689082718226 2 544.241943359375 MULTI HCD FTMS 0 0 0 17467 685902.3125 0.4147301020995074 -2 0.0553131103515625 2 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 142.0795815696625 1.719916958814042E-05 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 84.575 0 0 7.7844 7.7844 88.858 0 0 0 3.65279269351241 57.61993046835002 3.65279269351241 4.204328361272971 0 2.305462187404089 0 1.4291746928241125 0.2614393726401688 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;[YN]S{I|L}EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}DQM;{[QS]|[NT]}[YV]EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAT{I|L}D[AG]M;{[ES]|[DT]|[{I|L}C]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YV]SQM;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{I|L}{M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{[ES]|[DT]|[{I|L}C]}[YT]E[PS]Q{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[YV][PS]Q{M(Oxidation (M))|F} 7.7844;7.3974;6.6962;5.0143;4.5632;3.9262;3.4499;2.5422;0.82306;0.43213 +;-;-;-;-;-;-;-;-;- + 918 NaN NaN 328491.7 NaN 13814 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17470 73.99 NaN 359320 35 0 77524 0.261 + 17686 MALFEQEVL 9 59 548.2732117061606 1094.5318704791212 2 548.2730712890625 MULTI HCD FTMS 0 0 0 17467 185047.09375 0.5613718065883727 8 -0.2144775390625 3 Oxidation (M) _M(Oxidation (M))ALFEQEVL_ ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42 40.23920728925047 0.06424668180817725 2 EQEV{I|L} 5 4 54.182 0 0 4.9503 0 0 478.2264576642594 0 478.2264576642594 0 39.57834387816234 0 0 0 1.6747425010840047 0 0.4247425010840047 0 + EQEV{I|L} 4.9503 + + 372 NaN NaN 139045.8 NaN 13815 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17471 73.993 NaN 844930 35 0 41217 0.261 + 17549 LYVLPLSIGF 10 109 561.3339042716717 1120.6532556101433 2 561.3165893554688 MULTI HCD FTMS 0 0 0 17467 21379.01953125 0.049048661750247725 8 -0.2144775390625 4 Unmodified _LYVLPLSIGF_ REV__ENSG00000101337|ENST00000398022|TM9SF4 32.30548876998284 0.21217886106551395 2 [Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F} 10 -1 + 50.711 0 0 4.5251 4.5251 82.611 0 0 0 26.994474727091905 5.764837301042718 5.764837301042718 2.2004668748194334 0 0.7302046884880937 1.6989700043360187 0.5228787452803376 0 [Y{I|L}]{I|L}VP[VG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}[VG]T{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}S{I|L}G{M(Oxidation (M))|F};[Y{I|L}]{I|L}VP{I|L}Q[Y{I|L}];[Y{I|L}]{I|L}VP{I|L}[AG][Y{I|L}];VV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}KR{I|L}T{M(Oxidation (M))|F};VVV{M(Oxidation (M))|F}{I|L}{I|L}[PS]T{M(Oxidation (M))|F} 4.5251;4.3287;4.2087;3.1575;2.3358;2.0432;1.2231 -;-;-;-;-;-;- 2855 + NaN NaN 220081.9 NaN 13816 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17472 73.997 NaN 198420 35 0 30554 0.261 + 15891 LPLLAAEYS 9 50 488.77018072885784 NaN 0 488.7701721191406 PEAK HCD FTMS 0 0 0 17467 38809.88671875 0.32834274496097426 3 -0.0848846435546875 5 Unmodified _LPLLAAEYS_ REV__ENSG00000172673|ENST00000368248|THEMIS;REV__nc|ENSG00000172673|Q8N1K5-2|THEMIS;REV__nc|ENSG00000172673|Q8N1K5-3|THEMIS;REV__nc|ENSG00000172673|Q8N1K5-4|THEMIS 30.224811164608877 0.11876709777893199 2 P{I|L} 2 -1 20.969 0 0 2.1495 0 0 113.08334606700471 649.2813576314443 762.364703698449 0 0 0 0 0 1 0 0 0 P{I|L} 2.1495 + + 9 + NaN NaN 118163.4 NaN 13817 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17473 74 NaN 185110 35 0 12809 0.261 + 29538 TYVYMCHVGV 10 61 586.2675906843824 1170.5206284355647 2 586.2686767578125 MULTI HCD FTMS 0 0 0 17467 47313.58984375 0.06062945034542373 22 -0.603363037109375 6 Unmodified _TYVYMCHVGV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|94|2|anti-sense;L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense 15.847184025352803 0.36288280428275715 2 [YT]VY{M(Oxidation (M))|F}T 6 5 50.891 0 0 4.3477 0 0 0 393.1383150690063 393.1383150690063 35.31743128760553 0 0 0 0 0.8494850021680094 2 0 0 [YT]VY{M(Oxidation (M))|F}T 4.3477 - 202 + NaN NaN 115824.8 NaN 13818 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17474 74.003 NaN 257200 35 0 49367 0.261 + 35422 YYEGSKYC 8 55 506.7055969238281 NaN 0 506.7055969238281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YYEGSKYC_ REV__ENSG00000165805|ENST00000298699|C12orf50 2.8892196856762586 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.69109 0 0 312.0331681089562 583.2570229164057 895.290191025362 0 0 0 0 0 0 0 0 0 {I|L} 0.69109 - 12 + NaN NaN 125032.2 NaN 13819 3653 17467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17476 74.008 NaN 3843400 35 0 701980 0.327 + 28515 TPQFPDMIL 9 92 539.2678202098015 1076.5210874864028 2 539.26806640625 MULTI HCD FTMS 0 0 0 17475 3824078.25 0.5733995653258404 -14 0.3691558837890625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 93.16586880292088 0.00444300900000894 2 [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 82.903 0 0 7.701 7.701 87.546 0 0 0 1.365006360318688 16.478174818886373 1.365006360318688 1.365006360318688 0 2.1861818737241734 0 1.4604093769761874 0.2614393726401688 + + [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DP]{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]T{I|L}{I|L} 7.701;7.5742;6.8301;6.624;6.6028;6.5505;4.3728;3.973;3.493;2.8556 +;-;-;-;-;-;-;-;-;- + 2490 NaN NaN 673403.4 NaN 13820 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17477 74.012 NaN 1051300 35 0 332880 0.261 + 24017 RWFQPAIPSW 10 57 644.3354067530672 1286.6562605729343 2 644.83642578125 MULTI HCD FTMS 0 0 0 17475 407005.9375 0.8237729147239861 -1 0.026031494140625 2 Unmodified _RWFQPAIPSW_ ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF;nc|ENSG00000092929|Q70J99-3|UNC13D 34.93206674587334 0.18938571726943593 2 {I|L}W[CS]Q[PA]{I|L}PS 10 4 55.138 0 0 4.2854 0 0 0 201.06658350162346 201.06658350162346 28.627815773883327 0 0 0 0 2 0 0.4247425010840047 0 {I|L}W[CS]Q[PA]{I|L}PS 4.2854 - 279 + NaN NaN 248606.4 NaN 13821 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17478 74.016 NaN 803360 35 0 31641 0.262 + 15517 LPDPFAKIVV 10 100 549.8313875668127 1097.6482222004254 2 549.8319091796875 MULTI HCD FTMS 0 0 0 17475 250885.171875 0.8235256918212381 -1 0.026031494140625 3 Unmodified _LPDPFAKIVV_ ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 35.61225514009592 0.18348312004207498 2 {I|L}PDP 4 6 34.373 0 0 3.1315 0 0 0 672.4084566705686 672.4084566705686 16.576447055154514 0 0 0 0 0.7742275032520141 1 0 0 + {I|L}PDP 3.1315 + + 1280 + NaN NaN 220468.3 NaN 13822 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17479 74.019 NaN 215390 35 0 19485 0.261 + 7239 FSTVLGLLTL 10 62 532.3231952179156 1062.631837502631 2 532.3055419921875 MULTI HCD FTMS 0 0 0 17475 89894.0625 0.8174663122411503 1 -0.03272247314453125 4 Unmodified _FSTVLGLLTL_ REV__ENST00000540468.5_1_2:73480008-73480116:+|nuORF 29.081581746732265 0.240155558137004 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}DK 8 -1 35.047 0 0 3.2982 0 0 0 128.09505026306422 128.09505026306422 7.0795691459963415 0 0 0 0 0 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}{I|L}DK 3.2982 - 215 NaN NaN 117315.7 NaN 13823 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17480 74.023 NaN 523330 35 0 68310 0.261 + 35678 YYIYSQTYF 9 80 624.284536761424 1246.5545205896478 2 624.2850952148438 MULTI HCD FTMS 0 0 0 17475 281338.4375 0.58484851890471 -6 0.1663818359375 5 Unmodified _YYIYSQTYF_ ENSG00000121858|ENST00000241261|TNFSF10 114.6490535036381 0.0021834323520089267 2 YY{I|L}YSQTY{M(Oxidation (M))|F} 9 0 + 101.98 0 0 8.1809 8.1809 94.061 0 0 0 21.12704280191288 72.40971504134819 21.12704280191288 13.015384402724592 0 2.1549471895720984 1.3979400086720375 1.4049471895720984 0.3807196863200844 + + YY{I|L}YSQTY{M(Oxidation (M))|F};YY{I|L}YS[AG]TY{M(Oxidation (M))|F};YY{I|L}SYQTY{M(Oxidation (M))|F};YY{I|L}SY[AG]TY{M(Oxidation (M))|F};[YT][YV]YQTY{M(Oxidation (M))|F};YY{I|L}T[YN]TY{M(Oxidation (M))|F};YY{I|L}YSYTQ{M(Oxidation (M))|F};[YT][YV]Y[AG]TY{M(Oxidation (M))|F};YY{I|L}YSYT[AG]{M(Oxidation (M))|F};YY{I|L}SYYTQ{M(Oxidation (M))|F} 8.1809;7.1368;7.0746;6.0305;5.8129;5.6336;5.4913;4.7688;4.4472;4.3851 +;-;-;-;-;-;-;-;-;- + 1395 NaN NaN 174062.1 NaN 13824 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17481 74.026 NaN 794620 35 0 58434 0.261 + 11875 KFDFPVSYL 9 96 558.2920128617363 1114.5694727902726 2 558.291748046875 MULTI HCD FTMS 0 0 0 17475 248707.5625 0.5498423907689199 -6 0.1663818359375 6 Unmodified _KFDFPVSYL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 53.40400417844725 0.026808823219830042 2 {M(Oxidation (M))|F}PQPVSY{I|L} 8 3 60.602 0 0 5.4373 0 0 165.07910353828282 0 165.07910353828282 0 35.04432191740108 0 0 0 2.360924374808178 0 0.805462187404089 0 {M(Oxidation (M))|F}PQPVSY{I|L} 5.4373 - 1848 NaN NaN 208154.1 NaN 13825 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17482 74.029 NaN 151120 35 0 18453 0.264 + 35718 YYLLEEEKE 9 40 405.8634820776016 1214.5686168330049 3 405.8631896972656 MULTI HCD FTMS 0 0 0 17475 71055.375 0.7579220420347248 2 -0.0588531494140625 7 Unmodified _YYLLEEEKE_ ENSG00000162711|ENST00000336119|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 7.101721422024254 0.29718071671418667 2 Y{M(Oxidation (M))|F} 2 8 19.693 0 0 1.6214 0 0 886.4290987354111 0 886.4290987354111 0 12.703037561203843 0 0 0 0.3494850021680094 0 0 0 Y{M(Oxidation (M))|F} 1.6214 - 11 NaN NaN 121466.9 NaN 13826 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17483 74.033 NaN 201780 35 0 16203 0.261 + 23667 RQDFAHCTDF 10 56 620.2662042217554 NaN 0 620.2664794921875 PEAK HCD FTMS 0 0 0 17475 92681.3046875 1 0 0 8 Unmodified _RQDFAHCTDF_ REV__ENSG00000129596|ENST00000250535|CDO1;REV__ENST00000502631.1_1_5:115141132-115145367:-|nuORF 12.240655878213236 0.32970798410958835 2 D{M(Oxidation (M))|F}E{[MG]|[TS]}{I|L}D 7 -1 34.87 0 0 2.8154 0 0 165.0871436956607 263.10337244205317 428.19051613771387 0 0 0 0 0 1.2302046884880937 0 0.9247425010840047 0 D{M(Oxidation (M))|F}E{[MG]|[TS]}{I|L}D 2.8154 - 159 + NaN NaN 122278.1 NaN 13827 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17484 74.036 NaN 205620 35 0 20224 0.263 + 20993 PLLRRCYG 8 62 489.271484375 NaN 0 489.271728515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _PLLRRCYG_ REV__ENSG00000146966|ENST00000496613|DENND2A;REV__ENSG00000162777|ENST00000357640|DENND2D;REV__ENSG00000166444|ENST00000313726|DENND2B;REV__ENST00000526701.5_1_11:8724978-8732445:-|nuORF;REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A;REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D;REV__nc|ENSG00000166444|P78524-2|DENND2B;REV__nc|ENSG00000166444|P78524-3|DENND2B 6.354104778181461 0.38822285293237185 2 P{I|L} 2 -1 10.969 0 0 1.1233 0 0 114.08824095741234 649.2819366974478 763.3701776548602 0 0 0 0 0 0 0 0 0 P{I|L} 1.1233 + + 4 + NaN NaN 116030.4 NaN 13828 3654 17475 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17486 74.041 NaN 770720 35 0 270010 0.327 -1 0 50 413.19354773523565 824.3725425372713 2 413.19342041015625 MULTI HCD FTMS 0 0 0 17485 491625.84375 0.4242474474812657 45 -1.2286529541015625 1 NaN NaN 2 A 1 -1 0.71334 0 0 0.086531 0 0 546.1997042577776 204.11823450260002 750.3179387603776 0 0 0 0 0 0 0 0 0 A 0.086531 - 1 + NaN NaN 202801.4 NaN 13829 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17487 74.045 NaN 1039100 35 0 210050 0.261 + 26128 SPLVEPTVL 9 64 477.77899117453165 953.5434294158633 2 477.7789001464844 MULTI HCD FTMS 0 0 0 17485 315049.03125 0.4936910423614034 4 -0.10672760009765625 2 Unmodified _SPLVEPTVL_ KPNA1|p.I492Tfs*114|1|0.08|ENSG00000114030|chr3:122427127-122427127|A/-|frameshift_variant 30.224811164608877 0.11021837014094292 2 [PS]K{M(Oxidation (M))|F} 4 7 27.536 0 0 2.8877 0 0 0 491.30448223252273 491.30448223252273 2.530834337684311 0 0 0 0 0 1.5228787452803376 0.2614393726401688 0 [PS]K{M(Oxidation (M))|F} 2.8877 - 181 NaN NaN 244158.8 NaN 13830 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17488 74.049 NaN 379340 35 0 36501 0.261 + 19836 NYAWVYYHL 9 78 614.7931119449629 1227.5716709567257 2 614.7930297851562 MULTI HCD FTMS 0 0 0 17485 181707.875 0.002860414650531668 185 -4.419403076171875 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 85.64151623876279 0.004640175941193596 2 [YN]AWVYYH{I|L} 9 0 + 98.101 0 0 7.9914 7.9914 95.347 0 0 0 15.859790849763655 15.859790849763655 15.859790849763655 25.190775249321078 0 2.8252574989159953 1.6989700043360187 0 1.079689690656103 + + [YN]AWVYYH{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YN]AGEV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]AG{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YH{I|L};[YN]A[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]QEV[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]Q{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YH{I|L};[YN]AG{M(Oxidation (M))|F}[WP]N{M(Oxidation (M))|F}{I|L};[YN]AG{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[HN]PGEV{[DS]|[MA]|[CV]|TT}N{M(Oxidation (M))|F}{I|L} 7.9914;5.9394;4.6365;4.3169;3.8411;3.6971;3.3775;3.1058;2.9215;2.747 +;-;-;-;-;-;-;-;-;- + 867 NaN NaN 150721.7 NaN 13831 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17489 74.052 NaN 309680 35 0 50533 0.264 + -1 FFVSACSPCGR 11 55 410.85163855837834 1229.533086275335 3 410.8516845703125 MULTI HCD FTMS 0 0 0 17485 125468.796875 0.4230977233135821 4 -0.10672760009765625 4 Carbamidomethyl (C) _FFVSAC(Carbamidomethyl (C))SPCGR_ REV__ENST00000455904.5_2_3:13522657-13522876:+|nuORF 1.214830529360525 0.41359283248740725 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.0976 0 0 1064.4542573952554 0 1064.4542573952554 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0976 + + 15 + NaN NaN 134849.2 NaN 13832 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17490 74.055 NaN 294380 35 0 20320 0.261 + 15183 LMTTMSEFFD 10 66 611.2597885035108 1220.5050240738215 2 611.2591552734375 MULTI HCD FTMS 0 0 0 17485 63591.921875 0.36317209515989224 4 -0.10672760009765625 5 Unmodified _LMTTMSEFFD_ ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-3|TRIM66 22.736283301280096 0.29844449404982915 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AM{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 10 6 + 48.082 0 0 3.9395 3.9395 86.443 0 0 0 1.67276514903822 32.976146931408294 1.67276514903822 9.832881222565248 0 2.0669015600442577 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AM{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}P{[SA]|[TG]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[NS]{[SA]|[TG]}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}P{[YD]|[{M(Oxidation (M))|F}M]}[VG]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}P{[YD]|[{M(Oxidation (M))|F}M]}M{[WT]|[RM]} 3.9395;3.1339;2.5752;1.0436;0.0060443 -;-;-;-;- 150 NaN NaN 133286.8 NaN 13833 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17491 74.059 NaN 210770 35 0 18762 0.262 + 6557 FPLDKSLLL 9 59 523.3180766487468 1044.6216003642935 2 523.3180541992188 MULTI HCD FTMS 0 0 0 17485 36683.48046875 0.1719451166923392 4 -0.10672760009765625 6 Unmodified _FPLDKSLLL_ ENSG00000081177|ENST00000685843|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant;nc|ENSG00000081177|Q9NVH0-2|EXD2 40.23920728925047 0.06424668180817725 2 D{I|L}PE 4 7 39.68 0 0 3.7986 0 0 572.3906117169937 0 572.3906117169937 0 14.006375246153908 0 0 0 0.8494850021680094 0 0.4247425010840047 0 D{I|L}PE 3.7986 - 51 NaN NaN 134387 NaN 13834 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17492 74.062 NaN 165420 35 0 30106 0.261 -1 MLAIVQDIL 9 53 516.2926768160643 NaN 0 516.2767944335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _M(Oxidation (M))LAIVQDIL_ ENSG00000138823|ENST00000265517|MTTP 4.75600775471527 0.27219989241163056 2 {I|L}D 2 -1 10.969 0 0 1.0644 0 0 131.12872254759083 668.3097017877561 799.438424335347 0 0 0 0 0 0 0 0 0 {I|L}D 1.0644 - 14 + NaN NaN 109749.1 NaN 13835 3655 17485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17494 74.067 NaN 17262000 35 0 2531200 0.327 + 35626 YYIFIPSKF 9 85 589.318133034262 1176.621713135324 2 589.3189697265625 MULTI HCD FTMS 0 0 0 17493 9256956 0.33156196190769416 4 -0.0968017578125 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 139.13845188893973 5.0762478717762276E-05 2 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 103.41 0 0 8.7883 8.7883 93.917 0 0 0 9.35316740696797 9.35316740696797 9.35316740696797 9.35316740696797 0 2.774227503252014 1.6989700043360187 1.622363747448347 0.28872548999643577 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}P{I|L}SK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F} 8.7883;7.9934;6.6931;6.3386;6.1695;5.9958;5.8057;5.621;5.4698;5.2155 +;-;-;-;-;-;-;-;-;- + 3843 + NaN NaN 686006.8 NaN 13836 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17495 74.071 NaN 4052400 35 0 1838900 0.261 + 17286 LYPQFMFHL 9 90 606.2991014700842 1210.5836500069684 2 606.2994995117188 MULTI HCD FTMS 0 0 0 17493 1186288 0.10932318834355863 -4 0.11090087890625 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 91.908 0 0 7.592 7.592 93.668 0 0 0 54.87064522940577 7.147642715192504 7.147642715192504 15.902639302688954 0 2.360924374808178 2 0 0.6694451763165201 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}Y{[DS]|[MA]|[CV]|TT}[WM]{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}Y{I|L}[RP][C(Carbamidomethyl (C))K]{[{M(Oxidation (M))|F}D]|MM};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{[WN]|[YH]}M{I|L};{I|L}YP[R{I|L}][C(Carbamidomethyl (C))K]{[{M(Oxidation (M))|F}D]|MM} 7.592;6.2784;5.3083;4.3716;4.1972;3.9579;3.9297;3.8027;3.7983;3.6802 +;-;+;-;-;-;-;-;-;- + 1018 + NaN NaN 709499.8 NaN 13837 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17496 74.075 NaN 1134600 35 0 295560 0.261 + 18701 MYPYIFHVL 9 84 599.8021437863842 1197.5897346395684 2 599.8018188476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 67.858 0 0 5.6663 5.6663 85.248 0 0 0 4.471128017558641 4.471128017558641 4.471128017558641 4.471128017558641 0 2.579689690656103 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YP[{I|L}P]KW[{M(Oxidation (M))|F}T] 5.6663;5.2929;2.2611 +;+;- + 762 NaN NaN 265884.7 NaN 13838 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17497 74.078 NaN 1413400 35 0 49605 0.261 + 7336 FVCCAVCNKI 10 122 550.258988422836 1098.5034239124718 2 550.259033203125 MULTI HCD FTMS 0 0 0 17493 265393.6875 0.31460458965847654 -12 0.326568603515625 4 Unmodified _FVCCAVCNKI_ ENSG00000203872|ENST00000388923|C6orf163 10.823927491677226 0.4098686510432541 2 TPQ{M(Oxidation (M))|F}PD 6 10 33.855 0 0 3.0819 0 0 0 410.17183146583284 410.17183146583284 6.904047234929607 0 0 0 0 1.1549471895720984 0 0.4247425010840047 0 TPQ{M(Oxidation (M))|F}PD 3.0819 - 1467 + NaN NaN 304347.5 NaN 13839 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17498 74.082 NaN 379490 35 0 21697 0.262 -1 0 77 435.2510723915091 868.4875918498183 2 435.25103759765625 MULTI HCD FTMS 0 0 0 17493 243212.65625 0.6100515307754527 2 -0.04897308349609375 5 NaN NaN 2 V 1 -1 8.4949 0 0 0.97812 0 0 542.2937269589964 224.0972841852172 766.3910111442136 0 0 0 0 0 0.5 0 0 0 V 0.97812 - 15 + NaN NaN 146856.3 NaN 13840 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17499 74.085 NaN 1118900 35 0 112080 0.261 + 22699 QYAHLEWLL 9 100 586.8088174566491 1171.603081980098 2 586.8096313476562 MULTI HCD FTMS 0 0 0 17493 164730.890625 0.17549558117315892 -4 0.11090087890625 6 Unmodified _QYAHLEWLL_ ENSG00000119720|ENST00000354366|NRDE2 62.57269311338072 0.013982455292112035 2 {[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}TEW{I|L}{I|L} 9 3 + 62.066 0 0 5.2976 5.2976 90.257 0 0 0 1.610892374447829 35.20664854281284 1.610892374447829 20.000452295863553 0 1.2134679910804405 0 1.1549471895720984 1.1549471895720984 {[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}TEW{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}TE{I|L}W{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}TWE{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[NS]{[ES]|[DT]|[{I|L}C]}PGE{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[EP][C(Carbamidomethyl (C))K]GE{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}TEG{[QV]|[N{I|L}]|[RA]|[KV]}Q;[W{I|L}][DP]TW{[QV]|[N{I|L}]|[RA]|[KV]}Q;{[QV]|[N{I|L}]|[RA]|[KV]}[NS][PA]AME{I|L}{I|L};[W{I|L}]E[PS]W{[QV]|[N{I|L}]|[RA]|[KV]}Q 5.2976;3.5905;3.5867;3.215;3.0697;1.7959;1.6809;1.3299;1.1146 -;-;-;-;-;-;-;-;- 2706 NaN NaN 262995.5 NaN 13841 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17500 74.088 NaN 238370 35 0 31949 0.261 + 3482 EGQKDRNFVV 10 66 596.307091936782 1190.5996309403638 2 596.3074951171875 MULTI HCD FTMS 0 0 0 17493 150061.03125 0.4996798666896842 4 -0.0968017578125 7 Unmodified _EGQKDRNFVV_ REV__ENSG00000133657|ENST00000645319|ATP13A3 4.5288652416199255 0.4513317009562028 2 NM 2 -1 17.959 0 0 1.5084 0 0 0 942.4746187799436 942.4746187799436 3.226825097560422 0 0 0 0 0 0 0 0 NM 1.5084 - 52 + NaN NaN 126842.1 NaN 13842 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17501 74.091 NaN 301250 35 0 47185 0.261 + -1 FFTCWFCV 8 68 555.2326999894998 1108.4508470457995 2 555.232666015625 MULTI HCD FTMS 0 0 0 17493 109273.5 0.5467153476399359 -4 0.11090087890625 8 Carbamidomethyl (C) _FFTCWFC(Carbamidomethyl (C))V_ REV__ENST00000420940.6_1_3:39137751-39138060:+|nuORF 18.13498045792455 0.4603629008820478 2 S{I|L}EAD{M(Oxidation (M))|F}E 7 -1 61.516 0 0 5.5497 0 0 299.09153945136876 0 299.09153945136876 0 38.81305428125607 0 0 0 2.055462187404089 0 0 0 S{I|L}EAD{M(Oxidation (M))|F}E 5.5497 - 113 NaN NaN 135175.3 NaN 13843 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17502 74.095 NaN 312930 35 0 32495 0.261 + 34628 YPQENIIDTF 10 66 620.2983223480542 1238.5820917629082 2 620.2984008789062 MULTI HCD FTMS 0 0 0 17493 122148.2109375 0.5654476386197367 -3 0.0848846435546875 9 Unmodified _YPQENIIDTF_ ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1 49.52724829834842 0.07950882623896251 2 D{I|L}{I|L}DT{M(Oxidation (M))|F} 6 5 60.266 0 0 4.8657 0 0 516.225389549025 0 516.225389549025 0 42.77478693390201 0 0 0 1.8494850021680094 0 0 0 D{I|L}{I|L}DT{M(Oxidation (M))|F} 4.8657 - 223 NaN NaN 148492.5 NaN 13844 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17503 74.098 NaN 179390 35 0 20006 0.261 -1 QYSMEYFQF 9 45 629.7579968472613 1257.5014407613226 2 629.7579956054688 MULTI HCD FTMS 0 0 0 17493 60404.1171875 0.5058570461105764 1 -0.036102294921875 10 Oxidation (M) _QYSM(Oxidation (M))EYFQF_ ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 19.361941925380144 0.1930734562688509 2 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 4 -1 44.073 0 0 3.5048 0 0 654.2328818730532 0 654.2328818730532 0 37.083180127605345 0 0 0 1.2134679910804405 0 0 0 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3.5048 + + 38 NaN NaN 114686.4 NaN 13845 3656 17493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17505 74.103 NaN 406140 35 0 122700 0.327 + 8196 GQPKYQILL 9 50 530.3134795908805 1058.612406248561 2 530.313720703125 MULTI HCD FTMS 0 0 0 17504 123578.625 0.17524161708560965 7 -0.17774200439453125 1 Unmodified _GQPKYQILL_ L1MEd_dup14838|chr11:12977557-12977725:+|1.077120990270905|0.0943699703655045|3.51|509.0|8|1|anti-sense 11.640296217721598 0.25978676193971967 2 {I|L}{I|L}{I|L} 3 6 36.198 0 0 3.4194 0 0 701.3526759418849 0 701.3526759418849 0 29.20818753952375 0 0 0 1 0 0 0 + {I|L}{I|L}{I|L} 3.4194 + + 10 NaN NaN 150302.2 NaN 13846 3657 17504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17506 74.107 NaN 109920 35 0 9377.9 0.263 + 17764 MEGASQAN 8 37 404.1696931571729 806.3248333811458 2 404.1701965332031 MULTI HCD FTMS 0 0 0 17504 93865.5 0.011209669319800674 80 -1.8528976440429688 2 Unmodified _MEGASQAN_ ENSG00000142784|ENST00000319394|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;WDTC1|p.D623N|1|0.35|ENSG00000142784|chr1:27306216-27306216|G/A|missense_variant 2.577480529830294 0.5381683276125971 2 S 1 7 2.4743 0 0 0.30686 0 0 373.1663521667964 343.1002291315063 716.2665812983028 0 0 0 0 0 0 0 0 0 + S 0.30686 + + 16 + NaN NaN 103089 NaN 13847 3657 17504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17507 74.111 NaN 145770 35 0 19379 0.261 -1 DHTIIMYL 8 43 511.25480385671625 1020.4950547802325 2 511.2545166015625 MULTI HCD FTMS 0 0 0 17504 43014.609375 0.06049066492522096 55 -1.4886627197265625 3 Oxidation (M) _DHTIIM(Oxidation (M))YL_ ENSG00000133028|ENST00000255390|SCO1 2.302733041254933 0.5385759549224092 2 E 1 -1 5.4846 0 0 0.53744 0 0 102.1143152868569 786.3190401666624 888.4333554535193 0 0 0 0 0 0 0 0 0 E 0.53744 - 2 + NaN NaN 98061.1 NaN 13848 3657 17504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17509 74.116 NaN 2223400 35 0 379920 0.327 + 5223 FFDAELSQM 9 92 544.2417306025113 1086.4689082718226 2 544.2418823242188 MULTI HCD FTMS 0 0 0 17508 1080438.25 0.6532858361440691 3 -0.08061981201171875 1 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 145.12958885780327 1.3974915176135797E-05 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 86.718 0 0 7.9817 7.9817 90.133 0 0 0 2.243012119929091 49.11954370472159 2.243012119929091 6.576447055154517 0 2.6307196863200843 0 1.579689690656103 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;[YN]S{I|L}EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{[QS]|[NT]}[YV]EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA[{I|L}T]DQM;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA[{I|L}T]D[AG]M;{[QS]|[NT]}M{I|L}{[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F};{[QS]|[NT]}{I|L}M{[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[SA]|[TG]}{[QN]|[E{I|L}]|[KN]}DQM;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}S{I|L}{[MS]|[{M(Oxidation (M))|F}A]}DE{M(Oxidation (M))|F} 7.9817;7.3764;7.1341;4.6632;4.317;3.4695;3.1029;2.8371;2.4996;2.2035 +;-;-;-;-;-;-;-;-;- + 1838 NaN NaN 423406.1 NaN 13849 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17510 74.12 NaN 1356800 35 0 138990 0.261 + 22096 QHYVFEAKE 9 114 575.7790808213467 1149.5436087094934 2 575.7927856445312 MULTI HCD FTMS 0 0 0 17508 124340.9609375 0.17425174735198407 19 -0.5253219604492188 2 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 22.736283301280096 0.1639198954644489 2 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 7 53.508 0 0 4.6547 0 0 0 128.04458869838814 128.04458869838814 10.979763946944907 0 0 0 0 0.3494850021680094 1.0969100130080565 1.3338395061109685 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 4.6547 - 7204 NaN NaN 293415.8 NaN 13850 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17511 74.124 NaN 810380 35 0 311860 0.261 -1 WHPEMSPCS 9 78 565.7235117186028 1129.4324705040056 2 565.7233276367188 MULTI HCD FTMS 0 0 0 17508 183453.796875 0.40453150110853836 -10 0.27420806884765625 3 Carbamidomethyl (C) _WHPEMSPC(Carbamidomethyl (C))S_ CBX6|p.R359H|1|0.23|ENSG00000183741|chr22:38866372-38866372|C/T|missense_variant 2.0597508629832335 0.3354026079994024 2 {I|L}{I|L}{I|L} 3 -1 16.198 0 0 1.4342 0 0 582.0235482401368 205.13396631412346 787.1575145542603 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{I|L} 1.4342 - 22 + NaN NaN 218571.6 NaN 13851 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17512 74.133 NaN 579920 35 0 76898 0.261 + 3825 EPFKFLEPTL 10 82 610.8309923217121 1219.647431710224 2 610.8314819335938 MULTI HCD FTMS 0 0 0 17508 67219.8359375 0.318500155027557 -2 0.04897308349609375 4 Unmodified _EPFKFLEPTL_ ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1 32.78568957990786 0.20801173326193015 2 E{[RE]|[WV]}EP[{I|L}T] 7 5 35.035 0 0 2.8726 0 0 347.204476365385 0 347.204476365385 0 20.431372718143663 0 0 0 0.4247425010840047 0 1.0994850021680094 0.3807196863200844 E{[RE]|[WV]}EP[{I|L}T] 2.8726 - 250 + NaN NaN 175285.6 NaN 13852 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17513 74.136 NaN 260560 35 0 78010 0.263 + 34306 YPDTDVFL 8 46 485.2318202423581 968.4490875515162 2 485.2314147949219 MULTI HCD FTMS 0 0 0 17508 34899.22265625 0.22485822471806272 -2 0.04897308349609375 5 Unmodified _YPDTDVFL_ ENSG00000104140|ENST00000220507|RHOV 14.581692164780916 0.48650662947107914 2 {M(Oxidation (M))|F}{I|L} 2 6 25.969 0 0 2.6815 0 0 690.2855522587151 0 690.2855522587151 0 7.00700270390772 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.6815 + + 37 NaN NaN 122513.1 NaN 13853 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17514 74.139 NaN 2595800 35 0 270660 0.261 + 21217 PQRCMTSI 8 90 468.2256385103143 934.4367240874286 2 468.22515869140625 MULTI HCD FTMS 0 0 0 17508 19676.720703125 0.3054598786053551 -3 0.075103759765625 6 Unmodified _PQRCMTSI_ REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF 42.09456458481378 0.20402248593209013 2 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H 7 -1 + 81.49 0 0 8.7208 8.7208 89.553 0 0 0 2.654856465551987 2.654856465551987 2.654856465551987 2.654856465551987 0 1.7302046884880937 1.6989700043360187 0 0.2742275032520141 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}H;P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}H;P{[CA]|SS}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;PQ{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}H;[QP]{M(Oxidation (M))|F}{[ET]|[MV]}[WQ];P{[CA]|SS}T{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}H;{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}QP{I|L} 8.7208;8.4367;7.7311;5.6106;4.621;4.3323;4.2332;3.9349;3.3426;3.0779 -;-;-;-;-;-;-;-;-;- 785 + NaN NaN 487905.9 NaN 13854 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17515 74.143 NaN 320310 35 0 82873 0.261 -1 0 53 425.74195773448366 849.4693625357673 2 425.7421875 MULTI HCD FTMS 0 0 0 17508 52570.9609375 0.25421669996868135 6 -0.1648712158203125 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.42 0 0 1.3444 0 0 684.3899690804924 0 684.3899690804924 0 3.461183108385253 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3444 - 7 + NaN NaN 141168.7 NaN 13855 3658 17508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17517 74.147 NaN 261990 35 0 24618 0.327 + 17325 LYPRDLWNF 9 65 612.3132193600079 1222.6118857868157 2 612.314208984375 MULTI HCD FTMS 0 0 0 17516 40029.6640625 0.34253902201502084 -9 0.24359130859375 1 Unmodified _LYPRDLWNF_ ENST00000430983.5_1_17:62964482-62968772:-|nuORF;ENST00000565833.1_1_17:62965520-62968715:-|nuORF 26.268140514670165 0.13340543277302316 2 WN{M(Oxidation (M))|F} 3 6 25.807 0 0 2.1108 0 0 757.4122791974625 0 757.4122791974625 0 8.342648191017883 0 0 0 0.7134679910804405 0 0 0 + WN{M(Oxidation (M))|F} 2.1108 + + 134 NaN NaN 122668.4 NaN 13856 3659 17516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17518 74.152 NaN 691650 35 0 34593 0.261 + 16762 LYDIILKNF 9 85 569.8289472287493 1137.6433415242984 2 569.8284912109375 MULTI HCD FTMS 0 0 0 17516 238819.875 0.12096907004092307 -6 0.1654815673828125 2 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 134.295615338601 0.00034446139420701925 2 [Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 9 0 + 115.5 0 0 10.153 10.153 95.921 0 0 0 11.315848193474608 11.315848193474608 11.315848193474608 12.703037561203843 0 3.079689690656103 1.6989700043360187 0 1.3098943791441968 + + [Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}NK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}GGK{M(Oxidation (M))|F};[Y{I|L}]{[TV]|[{I|L}S]}{I|L}{I|L}[VG]N{M(Oxidation (M))|F};[Y{I|L}]N{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[Y{I|L}]{I|L}{I|L}[VG]N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}K{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F};[K{I|L}]{I|L}{[{M(Oxidation (M))|F}D]|MM}{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 10.153;9.0359;8.4538;7.6444;3.9982;3.2008;1.6459;1.4265;0.73865 +;-;-;-;-;-;-;-;- + 1238 + NaN NaN 196775.2 NaN 13857 3659 17516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17519 74.155 NaN 443520 35 0 116450 0.264 -1 0 58 425.74195773448366 849.4693625357673 2 425.7419128417969 MULTI HCD FTMS 0 0 0 17516 64497.90234375 0.3118916526601755 7 -0.185516357421875 3 NaN NaN 2 {I|L}{[QN]|[E{I|L}]|[KN]} 3 -1 6.2321 0 0 0.73364 0 0 476.23399373869546 0 476.23399373869546 0 1.283584488734527 0 0 0 0 0 0 0 {I|L}{[QN]|[E{I|L}]|[KN]} 0.73364 - 18 + NaN NaN 166516.1 NaN 13858 3659 17516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17520 74.159 NaN 404070 35 0 59424 0.261 + 19393 NPFHLELAL 9 75 527.2900571197684 1052.5655613063368 2 527.7916870117188 MULTI HCD FTMS 0 0 0 17516 82116.328125 0.36946342143791844 -4 0.10672760009765625 4 Unmodified _NPFHLELAL_ ENSG00000155561|ENST00000285968|NUP205 36.12702656103203 0.08312389501731911 2 {[YD]|[{M(Oxidation (M))|F}M]}[R{M(Oxidation (M))|F}][VG]{I|L}A{I|L} 9 5 + 50.128 0 0 4.7625 4.7625 90.229 0 0 0 3.9254497678533085 25.066753121453402 3.9254497678533085 29.048246627886982 0 1 1.6989700043360187 0.3054621874040891 0.7742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}[R{M(Oxidation (M))|F}][VG]{I|L}A{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L} 4.7625;2.0027 -;- 286 NaN NaN 165631.5 NaN 13859 3659 17516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17522 74.164 NaN 5187000 35 0 960230 0.327 + 28516 TPQFPDMIL 9 78 539.2678202098015 1076.5210874864028 2 539.268310546875 MULTI HCD FTMS 0 0 0 17521 5346558.5 0.8016871307194555 -8 0.20770263671875 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 110.6747026088012 0.0028322563155251486 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 90.174 0 0 8.3764 8.3764 89.662 0 0 0 3.979400086720375 16.478174818886373 3.979400086720375 3.979400086720375 0 1.9247425010840047 0 1.8098943791441968 0.5994850021680094 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{I|L}{[QC]|[C(Carbamidomethyl (C))A]}EPD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]T{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}P{I|L}{I|L}{M(Oxidation (M))|F}[QP]T 8.3764;8.0068;7.3077;7.1441;6.5945;4.1245;3.9042;3.5043;2.5505;1.285 -;+;-;-;-;-;-;-;-;- + 1140 NaN NaN 673282.1 NaN 13860 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17523 74.168 NaN 1848800 35 0 200700 0.261 + 35965 YYVRAWVVF 9 104 601.8238621292932 1201.6331713253862 2 601.8219604492188 MULTI HCD FTMS 0 0 0 17521 1420602.75 1 0 0 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 64.23631603340823 0.01165516075559909 2 YYVRAWVV{M(Oxidation (M))|F} 9 0 + 78.84 0 0 6.5611 6.5611 86.855 0 0 0 15.470511080866096 4.771212547196626 4.771212547196626 4.6792500248472635 0 2.1549471895720984 1.6989700043360187 0 0 + + YYVRAWVV{M(Oxidation (M))|F};YYVTP[KS]VV{M(Oxidation (M))|F};YYVRAWV{M(Oxidation (M))|F}V;YYVTP[KS]V{M(Oxidation (M))|F}V;[YV]YRAWVV{M(Oxidation (M))|F};YYV[VG]VVASV{M(Oxidation (M))|F};YYV[VG]V{[SA]|[TG]}VV{M(Oxidation (M))|F};[YV]YTP[KS]VV{M(Oxidation (M))|F};[YV]YRAWV{M(Oxidation (M))|F}V;YYVRV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{M(Oxidation (M))|F} 6.5611;6.1716;6.164;5.4837;5.2736;5.2226;5.0321;4.8842;4.8765;4.835 +;-;-;-;-;-;-;-;-;- + 5201 NaN NaN 374468.9 NaN 13861 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17524 74.172 NaN 1804600 35 0 130660 0.261 + 11876 KFDFPVSYL 9 98 558.2920128617363 1114.5694727902726 2 558.2921142578125 MULTI HCD FTMS 0 0 0 17521 452325.1875 1 0 0 3 Unmodified _KFDFPVSYL_ ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4 66.45667989310934 0.010234776021261575 2 [YV]Q{M(Oxidation (M))|F}VPSY{I|L} 9 5 + 54.821 0 0 4.9186 4.9186 84.102 0 0 0 9.520213704937603 22.043833736976026 9.520213704937603 4.586995208436107 0 1.6906140654642812 1.3979400086720375 0.7614393726401688 0 [YV]Q{M(Oxidation (M))|F}VPSY{I|L};[YV]{M(Oxidation (M))|F}QVPSY{I|L};[YV][AG]{M(Oxidation (M))|F}VPSY{I|L};[YV]{M(Oxidation (M))|F}[AG]VPSY{I|L};[Y{I|L}]N{M(Oxidation (M))|F}VPSY{I|L};[YV]{M(Oxidation (M))|F}[EP][KG]Y{I|L};[Y{I|L}]GG{M(Oxidation (M))|F}VPSY{I|L};[{I|L}P][HM]V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}K;[YV]T[VP]{[QD]|[EN]|[WG]|[KD]|[RS]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 4.9186;4.507;4.0924;3.6809;3.3571;2.6612;2.531;1.4825;0.10415 -;-;-;-;-;-;-;-;- 2720 NaN NaN 371281.8 NaN 13862 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17525 74.175 NaN 691270 35 0 96835 0.261 + 35679 YYIYSQTYF 9 86 624.284536761424 1246.5545205896478 2 624.28466796875 MULTI HCD FTMS 0 0 0 17521 481044.96875 1 0 0 4 Unmodified _YYIYSQTYF_ ENSG00000121858|ENST00000241261|TNFSF10 92.65332237495696 0.004456439685314431 2 YY{I|L}YSQTY{M(Oxidation (M))|F} 9 0 + 96.31 0 0 7.7261 7.7261 91.597 0 0 0 21.12704280191288 52.93427554967522 21.12704280191288 9.208187539523749 0 2.274227503252014 1.3979400086720375 1.0994850021680094 0 + + YY{I|L}YSQTY{M(Oxidation (M))|F};YY{I|L}YS[AG]TY{M(Oxidation (M))|F};YY{I|L}TNYTY{M(Oxidation (M))|F};[YT][Y{I|L}]NYTY{M(Oxidation (M))|F};YY{I|L}YS[YT]Q{M(Oxidation (M))|F};YY{I|L}YS[YT][AG]{M(Oxidation (M))|F};YY{I|L}YS{[NV]|[RG]}YY;YY{I|L}T[QT][PS]Q{M(Oxidation (M))|F};[YT]{[QS]|[NT]}{M(Oxidation (M))|F}Y{I|L}YY;YY{I|L}T[QT][DV][MN] 7.7261;6.9874;5.8868;4.7663;4.6973;3.9586;3.1941;2.4201;2.3021;0.67544 +;-;-;-;-;-;-;-;-;- + 1203 NaN NaN 191946.9 NaN 13863 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17526 74.178 NaN 573830 35 0 191420 0.261 + 24018 RWFQPAIPSW 10 61 644.3354067530672 1286.6562605729343 2 644.3355712890625 MULTI HCD FTMS 0 0 0 17521 307581.09375 0.5450150088790767 5 -0.1464996337890625 5 Unmodified _RWFQPAIPSW_ ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF;nc|ENSG00000092929|Q70J99-3|UNC13D 45.739877483867886 0.09559676962230333 2 SPTQ[PA]{I|L}PSW 10 3 66.631 0 0 5.1786 0 0 204.092403140729 0 204.092403140729 0 59.18366291575822 0 0 0 1.4247425010840047 0 0.4247425010840047 0 SPTQ[PA]{I|L}PSW 5.1786 - 259 + NaN NaN 185437 NaN 13864 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17527 74.182 NaN 392350 35 0 41140 0.261 + 18679 MYLKQILYL 9 73 592.8407899108754 1183.6670268885507 2 592.8406982421875 MULTI HCD FTMS 0 0 0 17521 142629.640625 0.9029892839789114 1 -0.0327911376953125 6 Unmodified _MYLKQILYL_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000256263|A8MPP1|DDX11L8 50.855029805455786 0.030374663808198754 2 [Y{I|L}]MGRR{I|L}Y 8 6 41.833 0 0 3.5342 0 0 0 128.07075374585102 128.07075374585102 23.873949984654246 0 0 0 0 0.8494850021680094 1.2218487496163564 0 0.3494850021680094 [Y{I|L}]MGRR{I|L}Y 3.5342 - 224 NaN NaN 146806 NaN 13865 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17528 74.185 NaN 307690 35 0 63257 0.261 + 7524 FWVGFVLLW 9 64 583.8231822169654 1165.6318115007307 2 583.8236694335938 MULTI HCD FTMS 0 0 0 17521 140590.46875 0.5118375579215337 -5 0.12293243408203125 7 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 28.173230860318316 0.11963627304438548 2 {I|L}{I|L}{I|L}W 4 6 41.102 0 0 3.5262 0 0 622.284959861525 0 622.284959861525 0 20.924778212679485 0 0 0 1.305462187404089 0 0 0 {I|L}{I|L}{I|L}W 3.5262 - 156 NaN NaN 141812.4 NaN 13866 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17529 74.188 NaN 117890 35 0 16163 0.261 + 19993 NYIEDLQNGPI 11 46 638.3121966274101 NaN 0 638.3135986328125 PEAK HCD FTMS 0 0 0 17521 33992.296875 0.7927172999016986 3 -0.09418487548828125 8 Unmodified _NYIEDLQNGPI_ ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11 9.5439744041441 0.3150466366044383 2 {I|L} 1 10 16.237 0 0 1.2739 0 0 277.10402462772714 881.3949279555164 1158.4989525832436 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2739 + + 5 + NaN NaN 108469.3 NaN 13867 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17530 74.192 NaN 94799 35 0 5019.6 0.264 + 18445 MPVIPPLF 8 61 457.2643155749803 912.5140782167606 2 457.2642517089844 MULTI HCD FTMS 0 0 0 17521 57010.13671875 0.3916118886740606 -13 0.34821319580078125 9 Unmodified _MPVIPPLF_ AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|9|3|sense 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 7 12.474 0 0 1.367 0 0 747.4349441608997 0 747.4349441608997 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.367 + + 23 + NaN NaN 97249.3 NaN 13868 3660 17521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17532 74.196 NaN 774810 35 0 266100 0.327 -1 0 58 413.19354773523565 824.3725425372713 2 413.19354248046875 MULTI HCD FTMS 0 0 0 17531 353742.75 0.3052615330548385 51 -1.395172119140625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.5484 0 0 659.2938815038714 0 659.2938815038714 0 10.54572234712534 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5484 - 9 + NaN NaN 204001.4 NaN 13869 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17533 74.201 NaN 1053800 35 0 59386 0.261 + -1 LNKMMISNGCV 11 108 613.2889968351896 1224.563440737179 2 613.276123046875 MULTI HCD FTMS 0 0 0 17531 51132.6328125 0.8431781654607373 1 -0.02618408203125 2 Oxidation (M) _LNKM(Oxidation (M))MISNGCV_ REV__ENST00000429243.6_1_12:53840105-53840219:+|nuORF 20.41453444215458 0.279209903849948 2 MR{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT] 8 -1 48.554 0 0 3.965 0 0 165.10549115324721 0 165.10549115324721 0 -3.1318715488394844 -3.1318715488394844 0 0 0 0 1.1989700043360187 1.7971062485323517 MR{M(Oxidation (M))|F}{M(Oxidation (M))|F}NN[MT] 3.965 - 1520 + NaN NaN 247599.5 NaN 13870 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17534 74.204 NaN 991260 35 0 107980 0.262 + 1197 AYLKAIVLF 9 85 519.3232549024 1036.6319568715999 2 519.3234252929688 MULTI HCD FTMS 0 0 0 17531 369647.875 0.061704515881763684 19 -0.5299530029296875 3 Unmodified _AYLKAIVLF_ ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;nc|ENSG00000177463|P49116-2|NR2C2 74.42276476219924 0.007657080072768255 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 79.624 0 0 7.6811 7.6811 96.722 0 0 0 20.374467812752926 49.966299270632035 20.374467812752926 79.624431554101 0 2.9604093769761874 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}KA{I|L}V{I|L}{M(Oxidation (M))|F} 7.6811 + + 980 NaN NaN 243887.3 NaN 13871 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17535 74.208 NaN 509750 35 0 105540 0.261 + 29982 VFIKYLPEW 9 70 597.8319685714237 1193.6493842096472 2 597.8323364257812 MULTI HCD FTMS 0 0 0 17531 204923.484375 0.7757793933789953 -1 0.0327911376953125 4 Unmodified _VFIKYLPEW_ ENSG00000080815|ENST00000324501|PSEN1;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000080815|P49768-2|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2 66.45667989310934 0.010234776021261575 2 [{M(Oxidation (M))|F}V]{I|L}KY{I|L}PEW 9 0 + 73.083 0 0 6.1227 6.1227 92.339 0 0 0 6.026909627198407 6.026909627198407 6.026909627198407 28.750612633917 0 2.75 0 0 0 + + [{M(Oxidation (M))|F}V]{I|L}KY{I|L}PEW;[{M(Oxidation (M))|F}V]{I|L}[Y{I|L}]KPEW 6.1227;3.7141 +;- + 159 NaN NaN 170179.6 NaN 13872 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17536 74.211 NaN 229700 35 0 18994 0.264 -1 YLCMTDEWF 9 62 422.17241264432005 1263.4954085331601 3 422.5072021484375 MULTI HCD FTMS 0 0 0 17531 25940.9765625 0.11892165266623503 1 -0.02618408203125 5 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))MTDEWF_ ENSG00000108578|ENST00000261714|BLMH;ENST00000578795.1_1_17:28576037-28576226:-|nuORF 5.731851221503515 0.3075653528928475 2 K{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6596 0 0 0 985.3298383967903 985.3298383967903 6.365006360318688 0 0 0 0 0 0 0 0 K{M(Oxidation (M))|F} 1.6596 - 5 + NaN NaN 129326 NaN 13873 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17537 74.214 NaN 306290 35 0 53555 0.261 + 26228 SPVPIISEL 9 50 477.77899117453165 953.5434294158633 2 477.7789001464844 MULTI HCD FTMS 0 0 0 17531 76289 0.11954709329298756 10 -0.28418731689453125 6 Unmodified _SPVPIISEL_ REV__ENSG00000112276|ENST00000314641|BVES 11.640296217721598 0.25978676193971967 2 SK{M(Oxidation (M))|F} 3 -1 28.544 0 0 2.9935 0 0 573.3378762926196 0 573.3378762926196 0 4.643331241078172 0 0 0 0 0 0.3054621874040891 0.3807196863200844 SK{M(Oxidation (M))|F} 2.9935 - 200 + NaN NaN 140235.4 NaN 13874 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17538 74.218 NaN 102850 35 0 9732.2 0.261 + -1 FFFFYGCSR 9 46 410.85163855837834 1229.533086275335 3 410.85174560546875 MULTI HCD FTMS 0 0 0 17531 31302.69921875 0.10555692811988615 10 -0.28418731689453125 7 Carbamidomethyl (C) _FFFFYGC(Carbamidomethyl (C))SR_ REV__ENST00000401990.5_1_2:242255386-242257729:+|nuORF;REV__ENST00000429791.5_1_2:242255882-242265429:+|nuORF;REV__ENST00000436795.5_2_2:242255386-242265429:+|nuORF 1.1933415558491238 0.3419706357095994 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2594 0 0 1064.4540742897866 0 1064.4540742897866 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2594 + + 5 + NaN NaN 103598.3 NaN 13875 3661 17531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17540 74.223 NaN 12199000 35 0 5868300 0.327 + 17287 LYPQFMFHL 9 57 606.2991014700842 1210.5836500069684 2 606.300048828125 MULTI HCD FTMS 0 0 0 17539 8348151 0.7693296097519887 2 -0.05806732177734375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 117.59872219059416 0.0017018906413822257 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 95.57 0 0 7.8945 7.8945 94.247 0 0 0 74.7062251842808 7.147642715192504 7.147642715192504 16.070006276765483 0 2.7104093769761874 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[RH][HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}H[Y{I|L}]{I|L};[QP]{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[Y{I|L}]H{I|L};[QP]{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[PG]P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.8945;6.5671;6.5137;5.4385;4.6572;4.0987;2.5752;2.0288;1.9034;0.89293 +;-;+;-;-;-;-;-;-;- + 346 + NaN NaN 702325 NaN 13876 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17541 74.227 NaN 3968600 35 0 539690 0.205 + 35627 YYIFIPSKF 9 88 589.318133034262 1176.621713135324 2 589.3187255859375 MULTI HCD FTMS 0 0 0 17539 2706513.5 0.09694082223029471 10 -0.28417205810546875 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 103.35351024395868 0.004027461563756449 2 YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F} 9 0 + 97.948 0 0 8.3245 8.3245 94.571 0 0 0 14.406140654642812 14.406140654642812 14.406140654642812 14.406140654642812 0 2.6989700043360187 1.6989700043360187 1.4916440611282626 0.25 + + YY{I|L}{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};{I|L}YY{M(Oxidation (M))|F}{I|L}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};{I|L}YY{M(Oxidation (M))|F}V[TP]K{M(Oxidation (M))|F} 8.3245;7.1002;6.6394;5.7359;5.5765;5.2313;5.0622;4.8269;4.4214;3.8913 +;-;-;-;-;-;-;-;-;- + 1529 + NaN NaN 466234.2 NaN 13877 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17542 74.23 NaN 1501500 35 0 156920 0.261 + 22700 QYAHLEWLL 9 109 586.8088174566491 1171.603081980098 2 586.8093872070312 MULTI HCD FTMS 0 0 0 17539 544753.375 0.58035144336891 2 -0.05806732177734375 3 Unmodified _QYAHLEWLL_ ENSG00000119720|ENST00000354366|NRDE2 88.95385435242217 0.004553379958619559 2 [YV]T[KC]{M(Oxidation (M))|F}W{I|L} 8 6 59.747 0 0 5.0996 0 0 0 128.06826636401084 128.06826636401084 24.08455936331349 0 0 0 0 0.8807196863200843 1.6989700043360187 1.1861818737241734 1.0484550065040281 [YV]T[KC]{M(Oxidation (M))|F}W{I|L} 5.0996 - 2255 NaN NaN 320986.6 NaN 13878 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17543 74.233 NaN 647890 35 0 65401 0.261 + 13258 KYMDIEFDF 9 82 604.2704273868659 1206.5263018405317 2 604.271240234375 MULTI HCD FTMS 0 0 0 17539 175085.90625 0.08461835247226544 11 -0.3104095458984375 4 Unmodified _KYMDIEFDF_ ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000128641|O43795-2|MYO1B 65.47368725323818 0.010552856507075443 2 [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 + 67.387 0 0 5.5852 5.5852 91.066 0 0 0 48.95750937337162 5.131740484369232 5.131740484369232 23.992114694466693 0 2.6549471895720984 0 1.0994850021680094 0 + + [YK]MD{I|L}E{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EE{M(Oxidation (M))|F}K{M(Oxidation (M))|F}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YK]M[{M(Oxidation (M))|F}V]EED{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}E[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};[YK]M[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YK]M[{M(Oxidation (M))|F}V]E{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.5852;3.5967;2.1917;1.4943;1.2257;1.1444;0.9953;0.6454 +;-;-;-;-;-;-;- + 497 + NaN NaN 190110.5 NaN 13879 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17544 74.236 NaN 1555700 35 0 70665 0.261 -1 0 125 550.258988422836 1098.5034239124718 2 550.2592163085938 MULTI HCD FTMS 0 0 0 17539 307898.96875 0.364991457153109 -6 0.1557769775390625 5 NaN NaN 2 TPQ{M(Oxidation (M))|F}PD 6 -1 55.02 0 0 5.0086 0 0 0 410.1723726861938 410.1723726861938 26.726059072819965 0 0 0 0 1.113982988912431 1.0969100130080565 0.4247425010840047 0.25 TPQ{M(Oxidation (M))|F}PD 5.0086 - 2258 + NaN NaN 323161.5 NaN 13880 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17545 74.24 NaN 1451700 35 0 165050 0.261 + 35218 YVLRLEPLL 9 108 558.3447831738802 1114.6750134145602 2 558.3449096679688 MULTI HCD FTMS 0 0 0 17539 411097.15625 1 0 0 6 Unmodified _YVLRLEPLL_ ENSG00000165943|ENST00000298894|MOAP1 63.960520009940105 0.0120409805053046 2 [YV]{I|L}R{I|L}EP{I|L}{I|L} 9 0 + 69.98 0 0 6.278 6.278 90.556 0 0 0 12.28855930516417 12.689754080708852 12.28855930516417 12.28855930516417 0 2.2689301784845295 1.3979400086720375 0 0 + + [YV]{I|L}R{I|L}EP{I|L}{I|L};[{I|L}P]{I|L}[HA]{I|L}EP{I|L}{I|L};[YV]{I|L}R{I|L}PE{I|L}{I|L};[YV]{I|L}R{I|L}P{I|L}E{I|L};[{I|L}P]{I|L}[HA]{I|L}PE{I|L}{I|L};[{I|L}P]{I|L}[HA]{I|L}P{I|L}E{I|L};[{I|L}P]{I|L}{[RE]|[WV]}[YV]{I|L}{I|L};[{I|L}P]{I|L}{[RE]|[WV]}{I|L}YV{I|L} 6.278;5.1756;5.0713;4.4553;3.9689;3.3529;1.9223;1.6901 +;-;-;-;-;-;-;- + 3280 NaN NaN 311007.7 NaN 13881 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17546 74.243 NaN 299170 35 0 21554 0.263 -1 0 74 435.2510723915091 868.4875918498183 2 435.2511291503906 MULTI HCD FTMS 0 0 0 17539 244245.625 0.6126425314943172 8 -0.2283782958984375 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.259 0 0 1.2964 0 0 703.4085646054808 0 703.4085646054808 0 1.0817721953646853 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2964 - 28 + NaN NaN 145206.6 NaN 13882 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17547 74.246 NaN 571840 35 0 47486 0.261 + 28929 TWTEVSYTF 9 83 567.261167618749 1132.507782304298 2 567.2612915039062 MULTI HCD FTMS 0 0 0 17539 76758.3671875 0.12173859397536965 11 -0.3104095458984375 8 Unmodified _TWTEVSYTF_ ENSG00000116663|ENST00000376753|FBXO6 68.08070601005525 0.009709267492204555 2 [YE][QP]VSYT{M(Oxidation (M))|F} 9 4 + 61.321 0 0 5.4146 5.4146 90.218 0 0 0 43.75833099041856 6.922262144776354 6.922262144776354 18.136955994924264 0 1.774227503252014 1.3010299956639813 0.4247425010840047 0 [YE][QP]VSYT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ESYT{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[HN]T{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[VG]HHYT{M(Oxidation (M))|F};[YE]{[QN]|[E{I|L}]|[KN]}[HC]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[QP][C(Carbamidomethyl (C))N] 5.4146;3.8132;2.3117;1.9627;0.69323;0.11883 -;-;-;-;-;- 599 + NaN NaN 169693.8 NaN 13883 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17548 74.25 NaN 226170 35 0 16090 0.261 + 27240 SYNPLWLRI 9 80 581.3246932966771 NaN 0 581.3241577148438 PEAK HCD FTMS 0 0 0 17539 29528.4609375 0.5298730476697368 1 -0.03520965576171875 9 Unmodified _SYNPLWLRI_ ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM 21.536976647645854 0.17708171045360593 2 N 1 8 9.2917 0 0 0.80057 0 0 250.09571260724516 793.4742273599047 1043.5699399671498 0 0 0 0 0 0.3807196863200844 0 0 0 + N 0.80057 + + 19 + NaN NaN 124330.6 NaN 13884 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17549 74.253 NaN 233930 35 0 24394 0.261 + 27808 TAVQVVADVL 10 70 507.7950298701138 1013.5755068070276 2 507.7956237792969 MULTI HCD FTMS 0 0 0 17539 74260.921875 0.9147418356334045 2 -0.05806732177734375 10 Unmodified _TAVQVVADVL_ ENSG00000198793|ENST00000361445|MTOR 21.590151480376914 0.30916502439568466 2 PQ[RN]ADV{I|L} 8 5 40.667 0 0 4.0122 0 0 102.1011822494806 0 102.1011822494806 0 14.206050022390535 0 0 0 1.7302046884880937 0 0.5 0.3494850021680094 PQ[RN]ADV{I|L} 4.0122 - 256 + NaN NaN 120376.2 NaN 13885 3662 17539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17551 74.258 NaN 1808300 35 0 510540 0.327 + 18702 MYPYIFHVL 9 98 599.8021437863842 1197.5897346395684 2 599.8026733398438 MULTI HCD FTMS 0 0 0 17550 1004036.625 0.7480394017616654 -5 0.1420135498046875 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 79.218 0 0 6.6148 6.6148 86.844 0 0 0 4.414543788274798 4.414543788274798 4.414543788274798 4.414543788274798 0 2.7614393726401687 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L}{M(Oxidation (M))|F}HV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}HV{I|L};[NS]N[HK]W[NS]V{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}HY{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}V{M(Oxidation (M))|F}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[{I|L}V]{M(Oxidation (M))|F}HY{I|L} 6.6148;6.2462;5.6519;3.2037;2.7539;2.0748;1.7994;1.4922;1.254;1.1119 +;+;-;-;-;-;-;-;-;- + 1284 NaN NaN 366819.7 NaN 13886 3663 17550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17552 74.262 NaN 1532600 35 0 140340 0.261 + 35966 YYVRAWVVF 9 98 601.8238621292932 1201.6331713253862 2 601.8222045898438 MULTI HCD FTMS 0 0 0 17550 802393.8125 0.5648263122818817 3 -0.07512664794921875 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 48.345845343767074 0.03388484103555672 2 YYVRAWVV{M(Oxidation (M))|F} 9 0 + 60.829 0 0 5.0622 5.0622 84.558 0 0 0 5.216525140920602 16.478174818886373 5.216525140920602 5.216525140920602 0 1.6549471895720984 1.3979400086720375 0 0 + + YYVRAWVV{M(Oxidation (M))|F};VV[{M(Oxidation (M))|F}V]HAWVV{M(Oxidation (M))|F};YYVTP[KS]VV{M(Oxidation (M))|F};YYP{[TV]|[{I|L}S]}[KS]VV{M(Oxidation (M))|F};VV[HM]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VV{M(Oxidation (M))|F};VV[HM][VS]WVV{M(Oxidation (M))|F};[Y{I|L}][PA]HAWVV{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}[KT]{[DA]|[EG]}VV{M(Oxidation (M))|F};VV[HM]{I|L}P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F};YYV[VG]V{[SA]|[TG]}VV{M(Oxidation (M))|F} 5.0622;4.6281;4.2286;4.045;3.949;3.8061;3.7153;3.5965;3.345;3.279 +;-;-;-;-;-;-;-;-;- + 2994 NaN NaN 317775.2 NaN 13887 3663 17550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17553 74.266 NaN 700320 35 0 62735 0.261 -1 DPACPEIKIQL 11 71 642.3369114102928 1282.6592698873856 2 642.3364868164062 MULTI HCD FTMS 0 0 0 17550 327871.375 0.33027813239313203 -5 0.1420135498046875 3 Carbamidomethyl (C) _DPAC(Carbamidomethyl (C))PEIKIQL_ ENSG00000076864|ENST00000374765|RAP1GAP;ENST00000471600.6_1_1:21924215-21924573:-|nuORF;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP 29.84058131909904 0.20237991466741817 2 P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}EAN{I|L}Q{I|L} 9 -1 78.809 0 0 6.1442 0 0 242.1261921613297 0 242.1261921613297 0 58.80387817565364 0 0 0 2.6549471895720984 0 0.7302046884880937 0.75 P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}EAN{I|L}Q{I|L} 6.1442 - 773 NaN NaN 191615.7 NaN 13888 3663 17550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17554 74.269 NaN 138830 35 0 14604 0.261 + 862 AWVAMWIDTF 10 51 620.2983223480542 1238.5820917629082 2 620.29833984375 MULTI HCD FTMS 0 0 0 17550 69803.2578125 0.32313274992000174 4 -0.10796356201171875 4 Unmodified _AWVAMWIDTF_ REV__ENSG00000174804|ENST00000531380|FZD4 36.12702656103203 0.1790159924230938 2 {I|L}DT{M(Oxidation (M))|F} 4 -1 40.93 0 0 3.3046 0 0 744.3455938154458 0 744.3455938154458 0 15.52378753635658 0 0 0 1.8494850021680094 0 0.9247425010840047 0 {I|L}DT{M(Oxidation (M))|F} 3.3046 + + 97 + NaN NaN 102836.4 NaN 13889 3663 17550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17555 74.273 NaN 211540 35 0 11867 0.261 + -1 IVCFFFGVVF 10 56 617.8180447580312 1233.6215365828623 2 617.8165893554688 MULTI HCD FTMS 0 0 0 17550 102460.5703125 0.7207560232942147 3 -0.07512664794921875 5 Carbamidomethyl (C) _IVC(Carbamidomethyl (C))FFFGVVF_ REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF 7.910154910731844 0.4334339971971892 2 VV{M(Oxidation (M))|F} 3 -1 25.93 0 0 2.1019 0 0 870.3984242169937 0 870.3984242169937 0 17.612212111848457 0 0 0 0.4247425010840047 0 0 0 VV{M(Oxidation (M))|F} 2.1019 + + 82 NaN NaN 124493.1 NaN 13890 3663 17550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17556 74.276 NaN 135290 35 0 15413 0.264 -1 LSSGQCGG 8 49 404.1696931571729 806.3248333811458 2 404.1699523925781 MULTI HCD FTMS 0 0 0 17550 61912.80859375 0.007393793363866925 86 -1.8472442626953125 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LSSGQC(Carbamidomethyl (C))GG_ ENST00000476870.5_1_7:100468185-100470922:+|nuORF 4.75600775471527 0.5349361699807423 2 E[R{M(Oxidation (M))|F}] 3 -1 5.1895 0 0 0.64361 0 0 356.13756028719894 0 356.13756028719894 0 4.476212463643421 0 0 0 0 0 0 0.4247425010840047 E[R{M(Oxidation (M))|F}] 0.64361 - 7 + NaN NaN 109945.1 NaN 13891 3663 17550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17558 74.281 NaN 725770 35 0 116750 0.327 + 5224 FFDAELSQM 9 70 544.2417306025113 1086.4689082718226 2 544.2418212890625 MULTI HCD FTMS 0 0 0 17557 346987.875 0.2098058487389064 9 -0.25234222412109375 1 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 118.0683919894846 0.0016252157255221692 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 80.43 0 0 7.4029 7.4029 88.579 0 0 0 4.137342758552691 57.23197507588033 4.137342758552691 5.3578940267558295 0 2.305462187404089 0 1.4802046884880937 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;[YN]S{I|L}EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{[QS]|[NT]}[YV]EA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA[{I|L}T]DQM;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DA[{I|L}T]D[AG]M;{[QS]|[NT]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE[PS]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[SA]|[TG]}{[QN]|[E{I|L}]|[KN]}DQM;[YN]S[{M(Oxidation (M))|F}E][PA]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7.4029;6.9097;6.5553;3.8972;3.7;2.8525;2.5612;2.1556;1.6366;0.74774 +;-;-;-;-;-;-;-;-;- + 527 NaN NaN 199017.2 NaN 13892 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17559 74.285 NaN 811020 35 0 82573 0.261 + 22097 QHYVFEAKE 9 95 575.7790808213467 1149.5436087094934 2 575.792724609375 MULTI HCD FTMS 0 0 0 17557 85672.2109375 0.12006126012546232 25 -0.68121337890625 2 Unmodified _QHYVFEAKE_ ENSG00000198954|ENST00000361983|KIFBP 13.90604991867851 0.24021115267848145 2 [YT]VY{M(Oxidation (M))|F}TM{I|L} 8 7 49.502 0 0 4.3063 0 0 0 128.04493575779068 128.04493575779068 -5.702494762297512 0 -5.702494762297512 0 0 0 1.2218487496163564 1.0451140161145327 0 [YT]VY{M(Oxidation (M))|F}TM{I|L} 4.3063 - 3564 NaN NaN 212582.5 NaN 13893 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17560 74.289 NaN 528580 35 0 227810 0.261 + -1 MNMHYGTNF 9 66 565.7235117186028 1129.4324705040056 2 565.7236328125 MULTI HCD FTMS 0 0 0 17557 147358.28125 0.3249377648774089 -4 0.11704254150390625 3 Oxidation (M) _MNM(Oxidation (M))HYGTNF_ REV__RHD|p.D164G|1|0.15|ENSG00000187010|chr1:25300950-25300950|A/G|missense_variant 3.944395688203298 0.32111559684428237 2 T{M(Oxidation (M))|F} 2 -1 16.198 0 0 1.4342 0 0 863.3065072245118 0 863.3065072245118 0 2.3856062735983112 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.4342 - 21 + NaN NaN 165938.7 NaN 13894 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17561 74.292 NaN 930550 35 0 91885 0.261 -1 YSDFLPSMQ 9 89 552.2388929291487 1102.4632329250974 2 552.2578735351562 MULTI HCD FTMS 0 0 0 17557 27394.31640625 0.366604479855101 6 -0.17031097412109375 4 Oxidation (M) _YSDFLPSM(Oxidation (M))Q_ ZW10|p.E48D|1|0.49|ENSG00000086827|chr11:113768929-113768929|T/A|missense_variant 13.042465956692817 0.2476723265019929 2 M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[CS]PM 9 -1 + 50.493 0 0 4.5801 4.5801 82.634 0 0 0 35.889399919613965 0.2980862898335346 0.2980862898335346 2.04119982655925 0 0.1989700043360188 0 1.055462187404089 0.3054621874040891 M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[CS]PM;M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{[CT]|[{M(Oxidation (M))|F}G]}PM;M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{[QC]|[C(Carbamidomethyl (C))A]}PM;{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}PE;M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[CP]|[EA]}N[MT];M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG][CS]PM;{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}PE;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[CS]PM;M{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}GG{[CT]|[{M(Oxidation (M))|F}G]}PM;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{[CT]|[{M(Oxidation (M))|F}G]}PM 4.5801;4.3949;4.2352;3.644;3.5612;3.4678;3.4589;3.3756;3.2826;3.1905 -;-;-;-;-;-;-;-;-;- 626 + NaN NaN 237142.1 NaN 13895 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17562 74.295 NaN 268530 35 0 28815 0.261 + -1 YLWALSCPSF 10 73 622.2940060255207 1242.5734591178414 2 622.2939453125 MULTI HCD FTMS 0 0 0 17557 98807.34375 0.8670449971710564 -4 0.11704254150390625 5 Carbamidomethyl (C) _YLWALSC(Carbamidomethyl (C))PSF_ REV__ENSG00000091490|ENST00000399878|SEL1L3;REV__ENST00000512286.1_1_4:25750049-25759447:-|nuORF;REV__nc|ENSG00000091490|Q68CR1-2|SEL1L3;REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 20.453626601364224 0.3197956946484955 2 {I|L}YYDHWS{I|L}{M(Oxidation (M))|F} 9 -1 + 66.973 0 0 5.3899 5.3899 83.83 0 0 0 15.823872065994564 2.078343878162343 2.078343878162343 2.078343878162343 0 1.8098943791441968 2 0 0 {I|L}YYDHWS{I|L}{M(Oxidation (M))|F};{I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YY[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y[W{I|L}]H{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F} 5.3899;5.2226;4.6969;4.1164 -;-;-;- 186 + NaN NaN 130957.5 NaN 13896 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17563 74.299 NaN 581560 35 0 85089 0.263 + 25485 SFDTGFTSF 9 73 504.71898435686023 1007.4234157805205 2 504.71917724609375 MULTI HCD FTMS 0 0 0 17557 66188.765625 0.519529412976716 -4 0.11704254150390625 6 Unmodified _SFDTGFTSF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 96.28474662873226 0.004361282420133734 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[YK]DS{M(Oxidation (M))|F} 8 4 + 50.952 0 0 5.0577 5.0577 91.626 0 0 0 1.4971991405514729 1.9754394916729723 1.4971991405514729 50.95229386281659 0 1.2614393726401687 1.3979400086720375 0.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[YK]DS{M(Oxidation (M))|F} 5.0577 - 443 NaN NaN 175973.2 NaN 13897 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17564 74.302 NaN 454860 35 0 63871 0.261 + 3174 EAVVEYVF 8 64 478.24217043879696 954.4697879443939 2 478.2419128417969 MULTI HCD FTMS 0 0 0 17557 92912.09375 0.910152366698845 -4 0.11704254150390625 7 Unmodified _EAVVEYVF_ ENSG00000197157|ENST00000354725|SND1 53.57557251787612 0.1056313556323 2 [PS][{I|L}T]EYV{M(Oxidation (M))|F} 8 4 + 62.33 0 0 6.5303 6.5303 91.67 0 0 0 12.469098975979179 37.40834068546627 12.469098975979179 15.228787452803374 0 1.5994850021680094 1.3979400086720375 1.2134679910804405 0 [PS][{I|L}T]EYV{M(Oxidation (M))|F};[VG]{[QN]|[E{I|L}]|[KN]}EYV{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}S[KC]V{M(Oxidation (M))|F};[Y{I|L}][{I|L}A]DDV{M(Oxidation (M))|F};[PS][{I|L}T][HN]{[WT]|[RM]} 6.5303;4.9348;2.9677;2.7296;0.93841 -;-;-;-;- 372 NaN NaN 178934.7 NaN 13898 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17565 74.305 NaN 230260 35 0 15605 0.261 + 28914 TWLVNSAAHLF 11 54 629.8328398342852 NaN 0 629.8330078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _TWLVNSAAHLF_ ENSG00000099194|ENST00000370355|SCD 28.270515756011903 0.1922664943600282 2 {I|L}VN 3 8 22.351 0 0 1.7772 0 0 287.1285058835012 641.3071383111936 928.4356441946948 0 0 0 0 0 1.305462187404089 0 0 0 + {I|L}VN 1.7772 + + 112 + NaN NaN 128373 NaN 13899 3664 17557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17567 74.31 NaN 5982800 35 0 1089900 0.327 + 28517 TPQFPDMIL 9 96 539.2678202098015 1076.5210874864028 2 539.2681884765625 MULTI HCD FTMS 0 0 0 17566 4119826.25 0.6177453562745445 -3 0.0875244140625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 89.40071534611396 0.0045416704840156395 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 81.498 0 0 7.5705 7.5705 87.964 0 0 0 3.0102999566398125 16.478174818886373 3.0102999566398125 3.0102999566398125 0 1.9247425010840047 0 1.4291746928241125 0.28872548999643577 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}T][QP]PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{I|L}[SG]C{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{I|L}[C(Carbamidomethyl (C))S]{I|L}{I|L} 7.5705;7.2909;6.8264;6.5468;6.1673;6.1321;4.2832;4.0408;3.6577;3.609 -;+;-;-;-;-;-;-;-;- + 3010 NaN NaN 866326.3 NaN 13900 3665 17566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17568 74.315 NaN 3436400 35 0 201970 0.261 + 16763 LYDIILKNF 9 122 569.8289472287493 1137.6433415242984 2 569.8291625976562 MULTI HCD FTMS 0 0 0 17566 1974222.625 1 0 0 2 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 223.05949007766432 5.22265287935879E-24 2 {I|L}YD{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 9 0 + 140.55 0 0 12.354 12.354 96.279 0 0 0 80.80722580053234 16.47817481888636 16.47817481888636 12.703037561203828 0 3.079689690656103 1.6989700043360187 0.28872548999643577 2.253083433768431 + + {I|L}YD{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};{I|L}YD{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}NK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}GGK{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}K{I|L}N{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y{I|L}{I|L}{I|L}NK{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}Y{I|L}{I|L}KN{M(Oxidation (M))|F} 12.354;11.238;9.4477;9.1072;8.6383;8.044;7.9581;7.7794;7.4389;7.2512 +;-;+;-;-;-;-;-;-;- + 5866 + NaN NaN 623542.9 NaN 13901 3665 17566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17569 74.318 NaN 463860 35 0 82824 0.261 + 19394 NPFHLELAL 9 60 527.2900571197684 1052.5655613063368 2 527.2902221679688 MULTI HCD FTMS 0 0 0 17566 158189.375 0.4408192766887567 2 -0.0556488037109375 3 Unmodified _NPFHLELAL_ ENSG00000155561|ENST00000285968|NUP205 47.748688679222035 0.03472022231463587 2 N{I|L}A{I|L} 4 5 48.928 0 0 4.6484 0 0 623.3058338849625 0 623.3058338849625 0 29.006375246153905 0 0 0 1 0 0 0.8494850021680094 N{I|L}A{I|L} 4.6484 - 89 NaN NaN 159842.2 NaN 13902 3665 17566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17570 74.321 NaN 294680 35 0 22673 0.261 + 11638 IYVHDLLTF 9 74 560.8056711153281 1119.596789297456 2 560.8059692382812 MULTI HCD FTMS 0 0 0 17566 52500.3359375 0.005885292673451637 43 -1.1873703002929688 4 Unmodified _IYVHDLLTF_ ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF;nc|ENSG00000166887|Q96JC1|VPS39 50.855029805455786 0.030374663808198754 2 [Y{I|L}][HD][{I|L}V]{I|L}T{M(Oxidation (M))|F} 9 2 + 50.862 0 0 4.5429 4.5429 88.123 0 0 0 15.417112166456448 32.27893090369818 15.417112166456448 13.450980400142562 0 0.8252574989159953 1.5228787452803376 0.4247425010840047 0 [Y{I|L}][HD][{I|L}V]{I|L}T{M(Oxidation (M))|F};[Y{I|L}][HD][{I|L}V]T{I|L}{M(Oxidation (M))|F};[Y{I|L}][HD][{I|L}V]T{M(Oxidation (M))|F}{I|L};[DP]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[Q{I|L}]{I|L}{M(Oxidation (M))|F};[DP]{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KP]Y{I|L} 4.5429;3.3415;2.3378;0.72689;0.051886 -;-;-;-;- 95 NaN NaN 131953.5 NaN 13903 3665 17566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17571 74.325 NaN 184050 35 0 11559 0.261 -1 QYSMEYFQF 9 53 629.7579968472613 1257.5014407613226 2 629.7587280273438 MULTI HCD FTMS 0 0 0 17566 35684.6953125 0.2988431153807628 10 -0.275177001953125 5 Oxidation (M) _QYSM(Oxidation (M))EYFQF_ ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion 15.248480904072842 0.22861284681709862 2 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 4 -1 35.349 0 0 2.8111 0 0 654.2332630841812 0 654.2332630841812 0 24.38039076304328 0 0 0 0.8807196863200843 0 0 0 Y{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.8111 + + 58 NaN NaN 122746 NaN 13904 3665 17566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17572 74.328 NaN 226850 35 0 30697 0.262 + 22109 QIGLQQFLL 9 47 530.3134795908805 1058.612406248561 2 530.31396484375 MULTI HCD FTMS 0 0 0 17566 20182.427734375 0.028619846457146873 15 -0.4162445068359375 6 Unmodified _QIGLQQFLL_ REV__ENSG00000133812|ENST00000256190|SBF2;REV__ENST00000533770.5_1_11:9861043-10215451:-|nuORF;REV__nc|ENSG00000133812|Q86WG5-3|SBF2;REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 11.640296217721598 0.25978676193971967 2 {I|L}{I|L}{I|L} 3 -1 26.682 0 0 2.5205 0 0 701.35161025215 0 701.35161025215 0 19.69273760456403 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 2.5205 - 13 NaN NaN 125517.5 NaN 13905 3665 17566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17574 74.333 NaN 2259600 35 0 140890 0.327 + 27224 SYNNFFRMF 9 115 613.2762343731825 1224.537915813165 2 613.2764892578125 MULTI HCD FTMS 0 0 0 17573 1459679.75 0.8845074450888576 1 -0.0328369140625 1 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 179.17365725063826 1.1335045685127237E-12 2 SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9 0 + 110.8 0 0 9.0482 9.0482 92.537 0 0 0 9.104247737636015 9.104247737636015 9.104247737636015 9.104247737636015 0 2.885151878060192 2 0 1.2104093769761877 + + SYNN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};SYNGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};SYGGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};SYGGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9.0482;8.3047;8.2962;8.2962;8.1354;7.5527;7.5478;7.3835;7.3835;5.9773 +;-;-;-;+;-;-;-;-;- + 6452 + NaN NaN 435845.6 NaN 13906 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17575 74.337 NaN 585560 35 0 98797 0.261 + 7525 FWVGFVLLW 9 71 583.8231822169654 1165.6318115007307 2 583.8235473632812 MULTI HCD FTMS 0 0 0 17573 187620.3125 0.6830557108194791 1 -0.0328369140625 2 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 28.173230860318316 0.11963627304438548 2 [YV]{I|L}[R{M(Oxidation (M))|F}]G{I|L}{I|L}W 9 5 + 64.587 0 0 5.541 5.541 83.361 0 0 0 15.93704052456225 15.93704052456225 15.93704052456225 0.4845500650402812 0 1.3494850021680094 1.5228787452803376 0 0 [YV]{I|L}[R{M(Oxidation (M))|F}]G{I|L}{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}AVW;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}{I|L}GW;[R{M(Oxidation (M))|F}]A{I|L}T{M(Oxidation (M))|F}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}G[R{M(Oxidation (M))|F}]{I|L}P{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}G{I|L}[R{M(Oxidation (M))|F}]{I|L}P{M(Oxidation (M))|F};[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]AVW;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]{I|L}GW 5.541;5.4994;4.8122;4.7246;4.6611;4.1737;4.1273;4.0857;4.0374;3.8864 -;-;-;-;-;-;-;-;-;- 864 NaN NaN 181968.4 NaN 13907 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17576 74.341 NaN 944120 35 0 154250 0.261 + 11433 IYPWVHVVI 9 86 563.3263729838401 1124.63819303448 2 563.32666015625 MULTI HCD FTMS 0 0 0 17573 317722.71875 0.10012587912122109 -7 0.185516357421875 3 Unmodified _IYPWVHVVI_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 67.41302359171755 0.009925318700911543 2 [Y{I|L}]V[WP]HVV{I|L} 9 2 + 44.332 0 0 3.9418 3.9418 81.859 0 0 0 8.150939967924593 7.410130897363835 7.410130897363835 2.1208891232720006 0 1.0228787452803376 1.6989700043360187 0 0 [Y{I|L}]V[WP]HVV{I|L};[Y{I|L}][WR]V{I|L}Y{I|L};[Y{I|L}]V[WR]{I|L}Y{I|L};[Y{I|L}][WR]VY{I|L}{I|L};[Y{I|L}]V[WR]Y{I|L}{I|L};{I|L}YP{[RE]|[WV]}HVV{I|L};[Y{I|L}][WR][Y{I|L}]V{I|L};[YV]{I|L}[WP]HVV{I|L};[YV]{I|L}[WR]{I|L}Y{I|L};[YV]{I|L}[WR]Y{I|L}{I|L} 3.9418;3.7533;3.7533;3.7197;3.7197;2.9694;2.8906;2.5377;2.3491;2.3155 -;-;-;-;-;+;-;-;-;- + 1704 NaN NaN 234409 NaN 13908 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17577 74.344 NaN 156140 35 0 7954.1 0.262 + 31238 VVQVQRAN 8 66 457.2643155749803 912.5140782167606 2 457.26446533203125 MULTI HCD FTMS 0 0 0 17573 107551.2265625 0.7387868436649472 -7 0.185516357421875 4 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 4.75600775471527 0.5349361699807423 2 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.4789 0 0 747.435249336681 0 747.435249336681 0 1.9010562085580318 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4789 - 18 + NaN NaN 122389.5 NaN 13909 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17578 74.348 NaN 545190 35 0 44714 0.261 + 11647 IYVISAETF 9 70 521.7764180052703 1041.5382830773406 2 521.7766723632812 MULTI HCD FTMS 0 0 0 17573 113916.1640625 0.30579711938178156 -2 0.05226898193359375 5 Unmodified _IYVISAETF_ ENSG00000116459|ENST00000369722|ATP5PB 154.46347324262513 4.107785341423729E-06 2 [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F} 9 0 + 86.046 0 0 8.2614 8.2614 96.946 0 0 0 15.871280189675971 66.57673934921631 15.871280189675971 48.51464731531564 0 2.5356668758921828 1.2218487496163564 0.9876954943324545 0 + + [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F};[Y{I|L}]V{I|L}S[DG][Y{I|L}];[Y{I|L}][DG]S{I|L}V[Y{I|L}] 8.2614;3.6034;1.0159 +;-;- + 427 NaN NaN 162672.4 NaN 13910 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17579 74.351 NaN 137590 35 0 18377 0.261 + 35680 YYIYSQTYF 9 65 624.284536761424 1246.5545205896478 2 624.2846069335938 MULTI HCD FTMS 0 0 0 17573 61038.6171875 0.12688754929941257 6 -0.17383575439453125 6 Unmodified _YYIYSQTYF_ ENSG00000121858|ENST00000241261|TNFSF10 55.50274090549119 0.023872834264864425 2 [YE]{M(Oxidation (M))|F}YSQT 7 4 51.807 0 0 4.156 0 0 0 325.1191500299438 325.1191500299438 44.01486657462591 0 0 0 0 2.079689690656103 1.5228787452803376 0.3252574989159953 0 [YE]{M(Oxidation (M))|F}YSQT 4.156 - 368 + NaN NaN 120199.6 NaN 13911 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17580 74.354 NaN 191860 35 0 26291 0.263 + 13150 KYLNWDAVFRF 11 57 486.92238242071346 1457.7453178623405 3 486.9222412109375 MULTI HCD FTMS 0 0 0 17573 37380.79296875 0.5260670116943813 1 -0.0328369140625 7 Unmodified _KYLNWDAVFRF_ ENSG00000149311|ENST00000675843|ATM 11.065280125700339 0.3606702632373656 2 AV{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 5 6 32.452 0 0 2.2262 0 0 819.3904727469093 0 819.3904727469093 0 25.462659351691535 0 0 0 0.8807196863200843 0 0 0 + AV{M(Oxidation (M))|F}R{M(Oxidation (M))|F} 2.2262 + + 34 + NaN NaN 115566.8 NaN 13912 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17581 74.358 NaN 233260 35 0 27696 0.261 + 21268 PRNSHLQQN 9 60 547.2774663105145 NaN 0 547.2785034179688 PEAK HCD FTMS 0 0 0 17573 30360.30078125 0.5200395464231878 4 -0.1180419921875 8 Unmodified _PRNSHLQQN_ ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC 12.240655878213236 0.2359303321180293 2 QQ{I|L}{[CT]|[{M(Oxidation (M))|F}G]}Q 6 8 22.937 0 0 2.0994 0 0 132.0438719747413 256.1305025690063 388.1743745437476 0 0 0 0 0 0 0 0.805462187404089 0.4247425010840047 QQ{I|L}{[CT]|[{M(Oxidation (M))|F}G]}Q 2.0994 - 106 + NaN NaN 123930.1 NaN 13913 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17582 74.361 NaN 430940 35 0 47468 0.261 -1 NPPVVSMVY 9 74 511.25480385671625 1020.4950547802325 2 511.254638671875 MULTI HCD FTMS 0 0 0 17573 28551.4765625 0.04015142359670649 63 -1.5203704833984375 9 Oxidation (M) _NPPVVSM(Oxidation (M))VY_ WDFY3|p.T1244M|1|0.24|ENSG00000163625|chr4:84787652-84787652|G/A|missense_variant 12.531546534597751 0.2520865569484384 2 NQ{I|L}{M(Oxidation (M))|F}RT{M(Oxidation (M))|F} 7 -1 61.235 0 0 6.0005 0 0 96.01289032886378 0 96.01289032886378 0 4.833555085941832 0 0 0 0 0 1.0484550065040281 0.6549471895720985 NQ{I|L}{M(Oxidation (M))|F}RT{M(Oxidation (M))|F} 6.0005 - 260 + NaN NaN 159716.3 NaN 13914 3666 17573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17584 74.366 NaN 4175800 35 0 1968200 0.327 + 17288 LYPQFMFHL 9 69 606.2991014700842 1210.5836500069684 2 606.2996826171875 MULTI HCD FTMS 0 0 0 17583 2252850.75 0.2076130137472328 7 -0.19338226318359375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 92.515 0 0 7.6422 7.6422 93.82 0 0 0 57.372118693881546 7.147642715192504 7.147642715192504 16.070006276765483 0 2.4049471895720984 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L}Y{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}[PA][YG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[RH][HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Y{I|L}]H{I|L} 7.6422;6.3147;5.4538;3.9481;3.1879;2.907;2.7749;2.7629;2.2233;2.0386 +;-;+;-;-;-;-;-;-;- + 337 + NaN NaN 655091.9 NaN 13915 3667 17583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17585 74.37 NaN 1979100 35 0 124330 0.261 + 35967 YYVRAWVVF 9 111 601.8238621292932 1201.6331713253862 2 602.3270263671875 MULTI HCD FTMS 0 0 0 17583 727393.75 0.7284849749621825 7 -0.19338226318359375 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 57.47134341890925 0.0211188941628804 2 YYVTP[KS]VV{M(Oxidation (M))|F} 10 4 + 52.515 0 0 4.3703 4.3703 81.68 0 0 0 2.5759292270558376 8.340766528098555 2.5759292270558376 0.528871982441359 0 1.1989700043360187 1.154901959985743 1.110924374808178 0.3252574989159953 YYVTP[KS]VV{M(Oxidation (M))|F};YYP{[TV]|[{I|L}S]}[KS]VV{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}[KT]{[DA]|[EG]}VV{M(Oxidation (M))|F};YYVRAWVV{M(Oxidation (M))|F};YYVTP[KS]V{M(Oxidation (M))|F}V;YYP{[TV]|[{I|L}S]}[KS]V{M(Oxidation (M))|F}V;[Y{I|L}]{M(Oxidation (M))|F}[KT]{[DA]|[EG]}V{M(Oxidation (M))|F}V;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q[HN][KS]VV{M(Oxidation (M))|F};YYVRAWV{M(Oxidation (M))|F}V;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q[PG]P[WK]V{M(Oxidation (M))|F} 4.3703;4.3263;4.1559;3.7578;3.5949;3.5509;3.3805;3.2881;3.2366;3.001 -;-;-;+;-;-;-;-;-;- + 2486 NaN NaN 400840.5 NaN 13916 3667 17583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17586 74.374 NaN 794490 35 0 278540 0.264 -1 0 49 413.19354773523565 824.3725425372713 2 413.19342041015625 MULTI HCD FTMS 0 0 0 17583 325063.90625 0.280513187514569 57 -1.4237442016601562 3 NaN NaN 2 {I|L} 1 -1 8.2268 0 0 0.99795 0 0 155.09618863277757 553.1715181940061 708.2677068267838 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.99795 - 5 + NaN NaN 209770.8 NaN 13917 3667 17583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17587 74.377 NaN 168930 35 0 58957 0.261 -1 0 54 610.1829667433981 609.175690276798 1 610.1842041015625 MULTI HCD FTMS 0 0 0 17583 49191.83203125 0.34755338664150254 -44 1.1371994018554688 4 NaN NaN 2 E 1 -1 2.2185 0 0 0.36418 0 0 150.93858197777303 326.1716707818969 477.11025275966995 0 0 0 0 0 0 0 0 0 E 0.36418 - 2 + NaN NaN 134780.7 NaN 13918 3667 17583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17588 74.381 NaN 158470 35 0 22069 0.263 + 32563 WIMIALAL 8 62 465.7774798005486 929.5404066678972 2 465.7774353027344 MULTI HCD FTMS 0 0 0 17583 74714.3671875 0.6704664095132734 -1 0.0328369140625 5 Unmodified _WIMIALAL_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 2.8892196856762586 0.5377058178582064 2 P 1 8 2.2185 0 0 0.23866 0 0 517.3089746384035 312.14963709049067 829.4586117288941 0 0 0 0 0 0 0 0 0 P 0.23866 - 5 + NaN NaN 111812.8 NaN 13919 3667 17583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17589 74.384 NaN 294900 35 0 45808 0.261 + 4729 EYSIVIQQL 9 60 546.8005493094464 1091.5865456856927 2 546.7998657226562 MULTI HCD FTMS 0 0 0 17583 68153.515625 0.5898593537400132 -3 0.08510589599609375 6 Unmodified _EYSIVIQQL_ ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST 62.57269311338072 0.013982455292112035 2 V{I|L}QQ{I|L} 5 4 51.81 0 0 4.7463 0 0 492.22126967597814 0 492.22126967597814 0 34.820618910682484 0 0 0 1.9247425010840047 0 0 0 + V{I|L}QQ{I|L} 4.7463 + + 214 NaN NaN 137492 NaN 13920 3667 17583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17591 74.389 NaN 2593600 35 0 337980 0.327 + 35628 YYIFIPSKF 9 109 589.318133034262 1176.621713135324 2 589.3185424804688 MULTI HCD FTMS 0 0 0 17590 1464098.875 0.052440510187349694 16 -0.4459686279296875 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 82.5293158979368 0.005033931517079822 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 81.512 0 0 6.9276 6.9276 92.384 0 0 0 21.020599913279625 16.478174818886373 16.478174818886373 15.511525224473814 0 2.4802046884880937 1.6989700043360187 0.28872548999643577 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[KS];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}[{M(Oxidation (M))|F}V][TP]K{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}V{I|L}[TP]K{M(Oxidation (M))|F} 6.9276;5.6093;5.1765;5.1411;4.755;4.6382;4.0786;3.8889;3.8582;3.8411 -;-;-;-;-;-;-;-;-;- 4570 NaN NaN 484589.8 NaN 13921 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17592 74.393 NaN 2192400 35 0 614990 0.261 + 18703 MYPYIFHVL 9 102 599.8021437863842 1197.5897346395684 2 599.8024291992188 MULTI HCD FTMS 0 0 0 17590 1342224.25 1 0 0 2 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 78.664 0 0 6.5685 6.5685 87.441 0 0 0 5.6424927368725974 48.781899267464865 5.6424927368725974 6.0784094103974695 0 2.7059771852360797 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};Y{M(Oxidation (M))|F}PY{I|L}{M(Oxidation (M))|F}HV{I|L};[HV]{M(Oxidation (M))|F}{I|L}ME{M(Oxidation (M))|F}Y{I|L};[NS]N[HK]H{[{M(Oxidation (M))|F}C]|[YS]}V{I|L};[NS]N[HK]W[NS]V{I|L};[NS]P{[QV]|[N{I|L}]|[RA]|[KV]}[HK]PYE;{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}ME{M(Oxidation (M))|F}Y{I|L};[Y{M(Oxidation (M))|F}]P[{I|L}V]{M(Oxidation (M))|F}HY{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}VME{M(Oxidation (M))|F}Y{I|L} 6.5685;6.061;5.858;2.7456;2.7028;2.7028;2.4534;2.162;1.9594;1.8063 +;+;-;-;-;-;-;-;-;- + 1579 NaN NaN 419979.9 NaN 13922 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17593 74.397 NaN 471210 35 0 62480 0.261 + 35219 YVLRLEPLL 9 79 558.3447831738802 1114.6750134145602 2 558.3449096679688 MULTI HCD FTMS 0 0 0 17590 113864.0703125 0.276976059263363 6 -0.17047119140625 3 Unmodified _YVLRLEPLL_ ENSG00000165943|ENST00000298894|MOAP1 29.84058131909904 0.11198220037953927 2 [YV]{I|L}R{I|L}EP{I|L}{I|L} 9 0 + 36.493 0 0 3.2739 3.2739 87.533 0 0 0 9.55497970033781 7.988161046649282 7.988161046649282 17.78659694992122 0 1.0629529932484498 1.3979400086720375 0 0 + + [YV]{I|L}R{I|L}EP{I|L}{I|L};[Y{I|L}]VR{I|L}EP{I|L}{I|L} 3.2739;1.6782 +;- + 761 NaN NaN 170962.6 NaN 13923 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17594 74.4 NaN 379970 35 0 30731 0.261 + 22701 QYAHLEWLL 9 84 586.8088174566491 1171.603081980098 2 586.8092041015625 MULTI HCD FTMS 0 0 0 17590 138531.21875 0.14758383599407107 8 -0.22286224365234375 4 Unmodified _QYAHLEWLL_ ENSG00000119720|ENST00000354366|NRDE2 52.268347100219714 0.028397529699942435 2 {[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}W{I|L}{I|L} 9 3 + 36.571 0 0 3.1214 3.1214 86.746 0 0 0 6.3933901623350025 5.1389183501672235 5.1389183501672235 13.877268672201456 0 0.805462187404089 0 0.805462187404089 1.1307196863200843 {[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}W{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}{I|L}W{I|L} 3.1214;1.937 -;- 191 NaN NaN 145824.9 NaN 13924 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17595 74.403 NaN 497390 35 0 22220 0.261 + 34548 YPIYDVLQM 9 106 579.2809552006942 1156.5473574681882 2 579.2813110351562 MULTI HCD FTMS 0 0 0 17590 84539.265625 0.9905998969214671 1 -0.02944183349609375 5 Oxidation (M) _YPIYDVLQM(Oxidation (M))_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000493271.1_1_2:96945134-96947649:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 56.17704186161178 0.022929533404884107 2 [Y{I|L}]P{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}Q{M(Oxidation (M))|F} 9 2 + 57.056 0 0 4.9333 4.9333 83.431 0 0 0 8.150735868702824 42.786282066942924 8.150735868702824 2.8872548999643612 0 1.8338395061109685 1.3010299956639813 0.23965182871044374 0 [Y{I|L}]P{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}Q{M(Oxidation (M))|F};[Y{I|L}][{M(Oxidation (M))|F}V]EV{I|L}Q{M(Oxidation (M))|F};[Y{I|L}]P{[YD]|[{M(Oxidation (M))|F}M]}V{I|L}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[YV]V{I|L}Q{M(Oxidation (M))|F};[Y{I|L}][{M(Oxidation (M))|F}V]EV{I|L}[AG]{M(Oxidation (M))|F};[Y{I|L}][YV][DP]{I|L}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}[YV]V{I|L}[AG]{M(Oxidation (M))|F};M{I|L}K{[{M(Oxidation (M))|F}D]|MM}[KT]Q{M(Oxidation (M))|F};[Y{I|L}]P{[YD]|[{M(Oxidation (M))|F}M]}V[QP]Y;[Y{I|L}][{M(Oxidation (M))|F}V]EV[QP]Y 4.9333;4.6837;4.1371;4.1368;3.8875;3.6361;3.3406;2.0198;1.804;1.5544 -;-;-;-;-;-;-;-;-;- 496 NaN NaN 174674.2 NaN 13925 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17596 74.407 NaN 143480 35 0 21962 0.261 + 2151 DGVLCLADIL 10 43 516.2757631653324 1030.5369733974646 2 516.2754516601562 MULTI HCD FTMS 0 0 0 17590 52343.3515625 0.3676407097912136 8 -0.22286224365234375 6 Unmodified _DGVLCLADIL_ ENSG00000188487|ENST00000379556|INSC;ENST00000447214.6_1_11:15209769-15267583:+|nuORF;nc|ENSG00000188487|Q1MX18-3|INSC;nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;nc|ENSG00000188487|Q1MX18|INSC 17.11289562659939 0.35104376501799556 2 D{I|L}{I|L} 3 7 35.445 0 0 3.4395 0 0 671.3321400373062 0 671.3321400373062 0 19.960762528683702 0 0 0 0.9247425010840047 0 0 0 + D{I|L}{I|L} 3.4395 + + 21 NaN NaN 102905 NaN 13926 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17597 74.41 NaN 396410 35 0 20055 0.261 + 14936 LLEVTAEVTF 10 87 561.3065324164697 NaN 0 561.3062744140625 PEAK HCD FTMS 0 0 0 17590 46292.359375 0.6829450735735907 -5 0.1308746337890625 7 Unmodified _LLEVTAEVTF_ ENSG00000133962|ENST00000256343|CATSPERB;nc|ENSG00000133962|Q9H7T0-2|CATSPERB 14.838274106304384 0.3224471714378502 2 T{I|L} 2 9 13.271 0 0 1.1843 0 0 166.08311270927294 737.3643379821782 903.4474506914512 0 0 0 0 0 0 0 0.3807196863200844 0 T{I|L} 1.1843 - 75 + NaN NaN 149109.6 NaN 13927 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17598 74.413 NaN 277830 35 0 29527 0.261 + 31477 VYELPGRIL 9 54 530.3134795908805 1058.612406248561 2 530.3117065429688 MULTI HCD FTMS 0 0 0 17590 39745.85546875 0.05636191521628171 17 -0.47548675537109375 8 Unmodified _VYELPGRIL_ REV__ENSG00000013364|ENST00000357402|MVP 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 29.24 0 0 2.7621 0 0 554.2719593732437 0 554.2719593732437 0 8.782672239435314 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 2.7621 - 61 NaN NaN 133086.8 NaN 13928 3668 17590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17600 74.418 NaN 1293200 35 0 115190 0.327 + 3660 ELLCEPNKPQI 11 85 642.3369114102928 1282.6592698873856 2 642.3370971679688 MULTI HCD FTMS 0 0 0 17599 657298.6875 0.6621236237288385 1 -0.0328521728515625 1 Unmodified _ELLCEPNKPQI_ REV__ENSG00000187833|ENST00000409561|C2orf78 45.739877483867886 0.09998344372470726 2 P[RD]DAN{I|L}Q{I|L} 9 -1 90.596 0 0 7.0631 0 0 242.12642104316564 0 242.12642104316564 0 42.89872999309055 0 0 0 2.7302046884880937 0 1.7544321917401078 0.75 P[RD]DAN{I|L}Q{I|L} 7.0631 - 2952 NaN NaN 295517.7 NaN 13929 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17601 74.423 NaN 520720 35 0 71502 0.263 + 5225 FFDAELSQM 9 67 544.2417306025113 1086.4689082718226 2 544.2417602539062 MULTI HCD FTMS 0 0 0 17599 173448.515625 0.10487546008115296 14 -0.3969573974609375 2 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 92.65332237495696 0.004456439685314431 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM 9 0 + 70.823 0 0 6.5186 6.5186 88.822 0 0 0 2.631288188505664 53.90212056128788 2.631288188505664 9.208187539523742 0 1.9247425010840047 0 1.3193415193665468 0 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}SQM;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}S[AG]M;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DAE{I|L}[MT]N;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}WE{I|L}ST{[SA]|[TG]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}[WY]T{[SA]|[TG]} 6.5186;5.6711;3.4122;3.0393;0.46908 +;-;-;-;- + 457 NaN NaN 172655.3 NaN 13930 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17602 74.426 NaN 208220 35 0 40177 0.261 -1 VMLESSVYL 9 54 528.7663091433035 NaN 0 528.7767333984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _VM(Oxidation (M))LESSVYL_ ENSG00000166111|ENST00000610966|SVOP 11.640296217721598 0.23883959125015683 2 EV{M(Oxidation (M))|F} 3 -1 15.177 0 0 1.4379 0 0 131.07376629309152 546.2572725885374 677.331038881629 0 0 0 0 0 0 0 0.3494850021680094 0 EV{M(Oxidation (M))|F} 1.4379 - 103 + NaN NaN 136932.6 NaN 13931 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17603 74.43 NaN 542620 35 0 109650 0.261 + 25260 SATLVDEVF 9 65 490.7504054516969 979.4862579701938 2 490.7506103515625 MULTI HCD FTMS 0 0 0 17599 104829.8125 0.3037720097593054 -1 0.02944183349609375 4 Unmodified _SATLVDEVF_ ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 61.357469665136826 0.01568246967499496 2 VDEV{M(Oxidation (M))|F} 5 4 59.68 0 0 6.093 0 0 372.2000904767594 0 372.2000904767594 0 50.21652514092061 0 0 0 2.3494850021680094 0 0.4247425010840047 0 + VDEV{M(Oxidation (M))|F} 6.093 + + 125 NaN NaN 178257.8 NaN 13932 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17604 74.433 NaN 450270 35 0 28132 0.261 + -1 MCNNGGNVQM 10 100 578.713060081125 1155.41156722905 2 578.7133178710938 MULTI HCD FTMS 0 0 0 17599 63281.62890625 0.5058660121340917 -1 0.02944183349609375 5 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))NNGGNVQM(Oxidation (M))_ REV__ENSG00000166147|ENST00000316623|FBN1 3.944395688203298 0.4544253912184634 2 [Y{I|L}][YV][DP]{I|L}Q 8 -1 20.741 0 0 1.7951 0 0 0 160.88810466484998 160.88810466484998 2.5356705871273064 0 0 0 0 0.5 1.3979400086720375 0 0.28872548999643577 [Y{I|L}][YV][DP]{I|L}Q 1.7951 - 85 NaN NaN 154597.5 NaN 13933 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17605 74.436 NaN 88598 35 0 20716 0.262 -1 CQMYLEKYQF 10 43 470.5464050008728 NaN 0 470.5462646484375 PEAK HCD FTMS 0 0 0 17599 7510.02978515625 0.08141762494699041 1 -0.0328521728515625 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))QMYLEKYQF_ ENSG00000138792|ENST00000265162|ENPEP 1.5922808571145555 0.3388215173004697 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108649.6 NaN 13934 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17606 74.44 NaN 115470 35 0 11114 0.261 + 28807 TTSMHSGS 8 40 404.1696931571729 806.3248333811458 2 404.169921875 MULTI HCD FTMS 0 0 0 17599 47647.19140625 0.005690155165436832 92 -1.9721221923828125 7 Unmodified _TTSMHSGS_ REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101185.1 NaN 13935 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17607 74.443 NaN 407310 35 0 31635 0.261 + 17065 LYKSAFFYF 9 86 593.3020895151474 1184.5896260970947 2 593.3030395507812 MULTI HCD FTMS 0 0 0 17599 94664.015625 0.49226681240079095 -1 0.02944183349609375 8 Unmodified _LYKSAFFYF_ ENSG00000164975|ENST00000380821|SNAPC3 63.960520009940105 0.0120409805053046 2 [Y{I|L}]K{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F} 9 0 + 84.855 0 0 7.1633 7.1633 86.548 0 0 0 1.3329467548003748 1.3329467548003748 1.3329467548003748 1.3329467548003748 0 2.4247425010840047 2 0.3494850021680094 0 + + [Y{I|L}]K{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{I|L}YK{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[Y{I|L}]K{M(Oxidation (M))|F}{[SA]|[TG]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[Y{I|L}]K{[SA]|[TG]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K{[SA]|[TG]}{M(Oxidation (M))|F}P{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]K{M(Oxidation (M))|F}{[SA]|[TG]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]K{[SA]|[TG]}{M(Oxidation (M))|F}P{I|L}[C(Carbamidomethyl (C))S];[Y{I|L}]K{M(Oxidation (M))|F}{[SA]|[TG]}P{[NV]|[RG]}{M(Oxidation (M))|F};[YK]{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};[Y{I|L}]K[DC]P[TA]K{M(Oxidation (M))|F} 7.1633;7.0507;6.1511;5.9256;5.7733;4.9135;4.8213;4.7611;4.6501;4.5456 +;+;-;-;-;-;-;-;-;- + 1208 NaN NaN 157129.5 NaN 13936 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17608 74.446 NaN 337930 35 0 42128 0.261 + 11402 IYPPEVAEF 9 72 532.7678528460937 NaN 0 532.767822265625 PEAK HCD FTMS 0 0 0 17599 39077.6171875 0.4950364087086369 1 -0.0328521728515625 9 Unmodified _IYPPEVAEF_ ENSG00000145386|ENST00000274026|CCNA2 30.224811164608877 0.11876709777893199 2 SEEQ{I|L}E 6 7 45.438 0 0 4.2724 0 0 130.08000393261847 215.1036776178344 345.1836815504529 0 0 0 0 0 0 0 1.079689690656103 0.3494850021680094 SEEQ{I|L}E 4.2724 - 265 + NaN NaN 131134.9 NaN 13937 3669 17599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17610 74.451 NaN 6531400 35 0 1239200 0.327 + 28518 TPQFPDMIL 9 73 539.2678202098015 1076.5210874864028 2 539.2682495117188 MULTI HCD FTMS 0 0 0 17609 4999283 0.7496150736823607 2 -0.05579376220703125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 93.16586880292088 0.00444300900000894 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 81.538 0 0 7.5742 7.5742 86.761 0 0 0 0.12304505667545129 16.478174818886373 0.12304505667545129 0.12304505667545129 0 1.9247425010840047 0 1.4916440611282624 0.2302046884880938 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 7.5742;7.5628;6.7401;6.624;6.4936 -;+;-;-;- + 974 NaN NaN 631184.1 NaN 13938 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17611 74.455 NaN 2057900 35 0 297670 0.261 + 26661 SYADQMFLL 9 109 552.2575992815406 1102.500645629881 2 552.2577514648438 MULTI HCD FTMS 0 0 0 17609 1902059.25 1 0 0 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 142.0795815696625 1.719916958814042E-05 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.051 0 0 8.5307 8.5307 93.838 0 0 0 4.137342758552691 69.49092531119419 4.137342758552691 10.382418650521359 0 2.274227503252014 0 1.4476212463643423 1 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{I|L}{M(Oxidation (M))|F}{I|L} 8.5307;7.589;6.7885;6.5298;5.8468;5.5881;5.0826;4.5372;4.1409;2.8313 +;-;-;-;-;-;-;-;-;- + 2505 NaN NaN 406144.2 NaN 13939 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17612 74.459 NaN 309230 35 0 22519 0.262 -1 0 69 435.2510723915091 868.4875918498183 2 435.25115966796875 MULTI HCD FTMS 0 0 0 17609 247321 0.620356510098005 16 -0.44258880615234375 3 NaN NaN 2 V 1 -1 6.9897 0 0 0.80481 0 0 498.26684097266826 268.12363611392817 766.3904770865964 0 0 0 0 0 0.5 0 0 0 V 0.80481 - 31 + NaN NaN 135763.6 NaN 13940 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17613 74.463 NaN 760450 35 0 75253 0.261 + 19530 NSFGHLSFIE 10 97 575.7790808213467 1149.5436087094934 2 575.7926635742188 MULTI HCD FTMS 0 0 0 17609 138062.46875 0.19348110423168408 31 -0.850189208984375 4 Unmodified _NSFGHLSFIE_ REV__ENSG00000138821|ENST00000356736|SLC39A8;REV__nc|ENSG00000138821|Q9C0K1-2|SLC39A8;REV__nc|ENSG00000138821|Q9C0K1-3|SLC39A8 12.240655878213236 0.39661705172222156 2 [YT]VY{M(Oxidation (M))|F}TM{I|L} 8 -1 43.943 0 0 3.8227 0 0 0 128.04496413560938 128.04496413560938 9.018346732563664 0 0 0 0 0.3494850021680094 1.0969100130080565 0.9916440611282626 0 [YT]VY{M(Oxidation (M))|F}TM{I|L} 3.8227 - 2436 NaN NaN 205896.6 NaN 13941 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17614 74.466 NaN 698520 35 0 297160 0.261 -1 YSWCQNCI 8 67 565.7235117186028 1129.4324705040056 2 565.7237548828125 MULTI HCD FTMS 0 0 0 17609 310348.625 0.684345580613761 2 -0.05579376220703125 5 2 Carbamidomethyl (C) _YSWC(Carbamidomethyl (C))QNC(Carbamidomethyl (C))I_ ENSG00000068489|ENST00000262293|PRR11;ENST00000581182.1_1_17:57247113-57262574:+|nuORF 4.75600775471527 0.5349361699807423 2 W 1 -1 12.218 0 0 1.0818 0 0 925.3433419413087 0 925.3433419413087 0 5.307262395435968 0 0 0 0 0 0 0 W 1.0818 + + 23 + NaN NaN 197147.1 NaN 13942 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17615 74.469 NaN 224490 35 0 49550 0.261 + 7129 FSAFPSFLL 9 51 514.7747723051659 NaN 0 514.774658203125 PEAK HCD FTMS 0 0 0 17609 125302.625 1 0 0 6 Unmodified _FSAFPSFLL_ ENST00000458587.6_1_X:152986386-152988647:-|nuORF 20.453626601364224 0.18435338882370536 2 CD{I|L}{[CA]|SS}{M(Oxidation (M))|F} 6 7 21.432 0 0 2.0857 0 0 131.09659470035314 241.15572534732658 372.25232004767975 0 0 0 0 0 0.8807196863200843 0 0.3494850021680094 0 CD{I|L}{[CA]|SS}{M(Oxidation (M))|F} 2.0857 - 39 + NaN NaN 119073.5 NaN 13943 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17616 74.472 NaN 401960 35 0 26775 0.261 + -1 YLWDCVQLF 9 93 622.2940060255207 1242.5734591178414 2 622.2948608398438 MULTI HCD FTMS 0 0 0 17609 78331.09375 0.687363715906739 2 -0.05579376220703125 7 Carbamidomethyl (C) _YLWDC(Carbamidomethyl (C))VQLF_ REV__ENSG00000133104|ENST00000438666|SPART;REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF 19.256988751693697 0.19398022840297344 2 [Y{I|L}]YTTPVCH{M(Oxidation (M))|F} 10 -1 + 51.52 0 0 4.1463 4.1463 88.688 0 0 0 19.201009673725764 21.61323399080281 19.201009673725764 20.510299956639813 0 1.492992819099939 2 0.6747425010840047 0 [Y{I|L}]YTTPVCH{M(Oxidation (M))|F};[YN]A[RH]PVCH{M(Oxidation (M))|F};[Y{I|L}]Y[H{I|L}][C(Carbamidomethyl (C))D]{I|L}{M(Oxidation (M))|F};[Y{I|L}]Y[H{I|L}]C[DG]{I|L}{M(Oxidation (M))|F};[YG]GA[RH]PVCH{M(Oxidation (M))|F};[YG]Q[RH]PVCH{M(Oxidation (M))|F};[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}C[VP]K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Y[H{I|L}][W{M(Oxidation (M))|F}]{[DS]|[MA]|[CV]|TT};[YN]A[RH]P{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]};[Y{I|L}]{[CA]|SS}C{[{M(Oxidation (M))|F}H]|[RQ]}K{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.1463;2.4956;1.6824;1.4033;1.2367;1.1921;0.85723;0.79511;0.73257;0.11618 -;-;-;-;-;-;-;-;-;- 886 NaN NaN 153915.3 NaN 13944 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17617 74.476 NaN 138910 35 0 28651 0.263 + 2257 DLIGCIIGR 9 45 480.2709550721021 958.5273572110042 2 480.27099609375 MULTI HCD FTMS 0 0 0 17609 80179.75 1 0 0 8 Unmodified _DLIGCIIGR_ ENSG00000183570|ENST00000681687|PCBP3;ENSG00000197111|ENST00000546463|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366|PCBP2 45.69961567697781 0.039180348357221985 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}GC{I|L}{I|L}{[NV]|[RG]} 9 0 + 65.701 0 0 6.8544 6.8544 88.021 0 0 0 65.70136750002268 4.762036441594191 4.762036441594191 6.478174818886373 0 2.06295299324845 1.6989700043360187 0 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}GC{I|L}{I|L}{[NV]|[RG]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}C(Carbamidomethyl (C)){I|L}{I|L}{[NV]|[RG]} 6.8544;6.1786 +;- + 85 + NaN NaN 119900 NaN 13945 3670 17609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17619 74.481 NaN 5896000 35 0 1229000 0.327 + 11434 IYPWVHVVI 9 117 563.3263729838401 1124.63819303448 2 563.3265991210938 MULTI HCD FTMS 0 0 0 17618 2377707 0.7493011661372775 -2 0.06247711181640625 1 Unmodified _IYPWVHVVI_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 109.15424536547461 0.003080475237576971 2 {I|L}YPWVHVV{I|L} 9 0 + 69.108 0 0 6.1449 6.1449 84.901 0 0 0 12.525749891599531 1.7339374311232802 1.7339374311232802 1.7339374311232802 0 2.579689690656103 1.6989700043360187 0 0 + + {I|L}YPWVHVV{I|L};[Y{I|L}]PWVHVV{I|L};[Y{I|L}]PWVVHV{I|L};[Y{I|L}]PWVHV{I|L}V;[Y{I|L}][WR]V{I|L}Y{I|L};[Y{I|L}]PWVVVH{I|L};[Y{I|L}][WR]VY{I|L}{I|L};[Y{I|L}]PWVVH{I|L}V;[Y{I|L}][WR]Y{I|L}V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}WVHVV{I|L} 6.1449;5.9907;5.3743;5.0311;4.8358;4.6189;4.6085;4.4147;4.2183;4.1564 +;+;-;-;-;-;-;-;-;- + 3489 + NaN NaN 824431.5 NaN 13946 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17620 74.485 NaN 1448600 35 0 67713 0.261 + 33980 YLVAAALLVGF 11 119 568.8392990268862 1135.6640451205724 2 569.8289184570312 MULTI HCD FTMS 0 0 0 17618 39308.63671875 0.1873870846474747 -9 0.25800323486328125 2 Unmodified _YLVAAALLVGF_ DDRGK1-RAC1|1|fusion;ENSG00000198171|ENST00000354488|DDRGK1;nc|ENSG00000198171|Q96HY6-2|DDRGK1 15.847184025352803 0.3190053777784024 2 NKP{I|L}{I|L}KN{M(Oxidation (M))|F} 8 8 65.98 0 0 5.8099 0 0 163.10175431477722 0 163.10175431477722 0 34.324932692999575 0 0 0 0 0 0 1.2104093769761877 NKP{I|L}{I|L}KN{M(Oxidation (M))|F} 5.8099 - 3087 + NaN NaN 309926.8 NaN 13947 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17621 74.489 NaN 900100 35 0 48986 0.261 + 27225 SYNNFFRMF 9 97 613.2762343731825 1224.537915813165 2 613.276611328125 MULTI HCD FTMS 0 0 0 17618 476285.625 0.2886100059285605 6 -0.16051483154296875 3 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 121.5340881639634 0.001118397630175091 2 {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9 0 + 83.213 0 0 6.7954 6.7954 88.518 0 0 0 7.927192863786004 15.441511759679344 7.927192863786004 7.927192863786004 0 2.9247425010840047 0 0.9896518287104438 1.1549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}NN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}NGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[YN]SGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GGGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[Y{I|L}][WH]{M(Oxidation (M))|F}NN[MT];[Y{I|L}][WH]{M(Oxidation (M))|F}NGG[MT];[Y{I|L}][WH]{M(Oxidation (M))|F}GGN[MT];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RDY 6.7954;6.1481;6.0435;6.0435;5.3961;4.6628;4.0494;3.2974;3.0318;2.8331 +;-;-;-;-;-;-;-;-;- + 1434 NaN NaN 223829 NaN 13948 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17622 74.492 NaN 967410 35 0 144680 0.262 + 31514 VYGFPVNQL 9 81 518.7767755670503 1035.5389982009006 2 518.7769165039062 MULTI HCD FTMS 0 0 0 17618 190680.1875 0.6672641144020189 1 -0.0261688232421875 4 Unmodified _VYGFPVNQL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 101.72198241140316 0.004218805956062179 2 [YV]G{M(Oxidation (M))|F}PVNQ{I|L} 9 0 + 60.306 0 0 5.8236 5.8236 88.279 0 0 0 9.690287068896026 45.11152733471803 9.690287068896026 9.208187539523749 0 1.642159058960253 1.0457574905606752 0 0.2614393726401688 + + [YV]G{M(Oxidation (M))|F}PVNQ{I|L};[YV]G{M(Oxidation (M))|F}PVN[AG]{I|L};[YV]G{M(Oxidation (M))|F}PVGGQ{I|L};[YV]G{M(Oxidation (M))|F}PVGG[AG]{I|L};[YV]{[RE]|[WV]}[QT]Q{I|L} 5.8236;4.9344;4.9344;3.7969;1.5195 +;-;-;-;- + 252 NaN NaN 238228 NaN 13949 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17623 74.495 NaN 871810 35 0 79877 0.261 + 1101 AYILGRINF 9 90 533.8058871025495 1065.597221271899 2 533.8062744140625 MULTI HCD FTMS 0 0 0 17618 258700.671875 0.5532001715514824 -2 0.06247711181640625 5 Unmodified _AYILGRINF_ tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1 60.38955033654506 0.017036522530421875 2 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 8 5 68.691 0 0 6.4462 0 0 132.15659244536704 0 132.15659244536704 0 39.72479721008234 0 0 0 1.5 0 0.7059771852360797 1 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 6.4462 - 1104 + NaN NaN 213707.2 NaN 13950 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17624 74.499 NaN 305410 35 0 45262 0.261 + 21787 QAIGIEVEL 9 59 486.274122241672 970.533691550144 2 486.27410888671875 MULTI HCD FTMS 0 0 0 17618 133675.046875 0.07354437009241596 -9 0.25800323486328125 6 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 53.832793166522166 0.026208976789938845 2 G{[QN]|[E{I|L}]|[KN]}VE{I|L} 6 3 45.565 0 0 4.6948 0 0 312.1783924787125 0 312.1783924787125 0 29.749321833847873 0 0 0 1.2302046884880937 0 0.6307196863200843 0.3054621874040891 + G{[QN]|[E{I|L}]|[KN]}VE{I|L} 4.6948 + + 56 NaN NaN 136146.4 NaN 13951 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17625 74.502 NaN 289580 35 0 42397 0.261 + 7526 FWVGFVLLW 9 73 583.8231822169654 1165.6318115007307 2 583.8233032226562 MULTI HCD FTMS 0 0 0 17618 93725.671875 0.341220279252074 6 -0.16051483154296875 7 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 20.871210003555333 0.18003371494288972 2 [YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W 9 5 + 65.864 0 0 5.6505 5.6505 84.64 0 0 0 17.772336398234003 35.94212497064703 17.772336398234003 3.0102999566398125 0 1 1.3979400086720375 0 0 [YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]G{I|L}{I|L}W;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]G{I|L}W;[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}{I|L}GW;[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]{I|L}GW;[MT]AA{I|L}[R{M(Oxidation (M))|F}]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}[R{M(Oxidation (M))|F}]{I|L}Q{NN|[MP]|[D{I|L}]|[EV]};[MT]AA[R{M(Oxidation (M))|F}]{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}{I|L}[R{M(Oxidation (M))|F}]Q{NN|[MP]|[D{I|L}]|[EV]};[MT][RV]G[{M(Oxidation (M))|F}V]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.6505;5.3922;5.2411;4.9633;4.5539;2.9105;2.8425;2.5012;2.4332;2.1855 -;-;-;-;-;-;-;-;-;- 417 NaN NaN 132920.8 NaN 13952 3671 17618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17627 74.507 NaN 2026200 35 0 970470 0.327 + 17289 LYPQFMFHL 9 68 606.2991014700842 1210.5836500069684 2 606.2996826171875 MULTI HCD FTMS 0 0 0 17626 1173333.875 0.10812939202495724 12 -0.327880859375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 81.61307344734483 0.005330412723537057 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 88.879 0 0 7.3418 7.3418 92.76 0 0 0 83.39448436569874 7.147642715192504 7.147642715192504 13.455612550363796 0 2.353917193908117 2 0 0.4247425010840047 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[RH][HA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 7.3418;6.2303;5.2746;2.9829;2.533 +;-;+;-;- + 142 + NaN NaN 397733.5 NaN 13953 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17628 74.511 NaN 431040 35 0 43562 0.261 + 11648 IYVISAETF 9 74 521.7764180052703 1041.5382830773406 2 521.7763061523438 MULTI HCD FTMS 0 0 0 17626 159149.828125 0.42722259295905735 4 -0.10477447509765625 2 Unmodified _IYVISAETF_ ENSG00000116459|ENST00000369722|ATP5PB 125.62461146993168 0.0008703235425492373 2 [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F} 9 0 + 86.213 0 0 8.2775 8.2775 96.992 0 0 0 15.871280189675971 72.40085961185265 15.871280189675971 48.826994156836385 0 2.5356668758921828 1.2218487496163564 1.0044321917401078 0 + + [Y{I|L}]V{I|L}SAET{M(Oxidation (M))|F};[Y{I|L}]V{I|L}S[DG][Y{I|L}] 8.2775;3.5895 +;- + 214 NaN NaN 146668.5 NaN 13954 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17629 74.515 NaN 361630 35 0 34960 0.261 + 11214 IYKPVTDFFL 10 83 621.8419310433534 1241.6693091535067 2 621.8419189453125 MULTI HCD FTMS 0 0 0 17626 241569.765625 0.9346787990693878 -1 0.0261688232421875 3 Unmodified _IYKPVTDFFL_ ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF 69.33821966488729 0.018369488249132326 2 [Y{I|L}]K[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 82.031 0 0 6.6065 6.6065 87.108 0 0 0 5.180606357151504 16.53212513775344 5.180606357151504 5.180606357151504 0 2.392159058960253 1.6989700043360187 0.3494850021680094 0 + + [Y{I|L}]K[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YK[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YK]{I|L}[VP]TD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}[PA]{I|L}YK{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}[PA]K{I|L}Y{I|L};{I|L}YK[{M(Oxidation (M))|F}T]RR{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}[PA]{I|L}KY{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}D]|MM}[PA]{I|L}Y{I|L}K;[YN]RR{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YN]RR{[ET]|[MV]}YK{I|L} 6.6065;6.1893;4.7955;3.1276;3.0074;2.9741;2.844;2.1655;2.1101;1.1003 +;+;-;-;-;-;-;-;-;- + 630 NaN NaN 144908.7 NaN 13955 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17630 74.518 NaN 338970 35 0 30466 0.263 + 1065 AYGSLFNTI 9 57 493.2529702421401 984.4913875510803 2 493.25286865234375 MULTI HCD FTMS 0 0 0 17626 252486.75 0.8251095650841875 -1 0.0261688232421875 4 Unmodified _AYGSLFNTI_ ENSG00000137944|ENST00000260508|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-2|KYAT3;nc|ENSG00000137944|Q6YP21-3|KYAT3 107.1870275148908 0.00340162908551068 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]NT{I|L} 9 2 + 73.241 0 0 7.4395 7.4395 87.188 0 0 0 27.969837217489513 16.478174818886373 16.478174818886373 1.706962271689747 0 1.2059771852360797 2 0.8494850021680094 0.7614393726401688 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]GGT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]GGT{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}[Y{I|L}]NT{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}T[Y{I|L}]NT{I|L};[YQ]A[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]E[KA];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]E[KA];{[QS]|[NT]}{M(Oxidation (M))|F}[Y{I|L}]GGT{I|L} 7.4395;7.2661;6.3253;5.7307;4.5984;4.5984;4.2939;3.8448;3.6715;3.6576 -;-;-;-;-;-;-;-;-;- 334 NaN NaN 133880.5 NaN 13956 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17631 74.522 NaN 151250 35 0 6921.6 0.261 + 12400 KPGKGARAE 9 62 457.2643155749803 912.5140782167606 2 457.26409912109375 MULTI HCD FTMS 0 0 0 17626 100199.859375 0.6882891084492629 -1 0.0261688232421875 5 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 W 1 9 13.099 0 0 1.4355 0 0 708.4239730915638 0 708.4239730915638 0 4.6040937697618745 0 0 0 0 0 0 0 W 1.4355 - 30 + NaN NaN 113691.6 NaN 13957 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17632 74.525 NaN 360350 35 0 16210 0.261 + 17423 LYRLEFGLF 9 77 579.3211254631607 1156.6276979931213 2 579.3211669921875 MULTI HCD FTMS 0 0 0 17626 160043.203125 1 0 0 6 Unmodified _LYRLEFGLF_ ENST00000361272.8_2_8:17087834-17087987:-|nuORF 30.636539890814138 0.10832830463492794 2 {I|L}YY 3 7 35.802 0 0 3.0954 0 0 0 714.3723238580686 714.3723238580686 26.822581265925436 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}YY 3.0954 - 177 + NaN NaN 157380.2 NaN 13958 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17633 74.528 NaN 147040 35 0 14862 0.261 + 22171 QKYNLGFAL 9 55 527.2900571197684 1052.5655613063368 2 527.2911987304688 MULTI HCD FTMS 0 0 0 17626 50441.38671875 0.14056276288175001 9 -0.24920654296875 7 Unmodified _QKYNLGFAL_ tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1 7.910154910731844 0.2910521888787154 2 {I|L}A{I|L} 3 6 30.445 0 0 2.8925 0 0 737.3497791974625 0 737.3497791974625 0 -4.680475292681265 -4.680475292681265 0 0 0.4247425010840047 0 0 0 {I|L}A{I|L} 2.8925 - 258 NaN NaN 111962.4 NaN 13959 3672 17626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17635 74.533 NaN 1678700 35 0 227700 0.327 + 35629 YYIFIPSKF 9 82 589.318133034262 1176.621713135324 2 589.3184814453125 MULTI HCD FTMS 0 0 0 17634 872918.875 0.03126586048170233 21 -0.5815582275390625 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 60.07390631473393 0.0174780869009295 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 80.341 0 0 6.8281 6.8281 92.461 0 0 0 18.891660843645326 16.478174818886373 16.478174818886373 16.760912590556813 0 2.1747425010840047 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};YY{I|L}{I|L}V{M(Oxidation (M))|F}{[NV]|[RG]}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F} 6.8281;5.4036;5.2225;5.1358;4.7672;4.467;4.0046;3.7131;3.3428;3.1617 -;-;-;-;-;-;-;-;-;- 1364 NaN NaN 370233.8 NaN 13960 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17636 74.537 NaN 1524400 35 0 406310 0.261 + 18704 MYPYIFHVL 9 93 599.8021437863842 1197.5897346395684 2 599.8023681640625 MULTI HCD FTMS 0 0 0 17634 750301.3125 0.5589984777133925 5 -0.13428497314453125 2 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 126.59992964902067 0.000811174345900146 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 73.527 0 0 6.1396 6.1396 86.044 0 0 0 4.565060397667352 4.565060397667352 4.565060397667352 4.565060397667352 0 2.66944517631652 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}{M(Oxidation (M))|F}HV{I|L};{M(Oxidation (M))|F}YPY{I|L}[{I|L}V]{[{M(Oxidation (M))|F}H]|[RQ]};[NS]N[HK]H{[{M(Oxidation (M))|F}C]|[YS]}V{I|L};[NS]N[HK]W[NS]V{I|L} 6.1396;5.7584;3.3172;1.9362;1.751 +;+;-;-;- + 1268 NaN NaN 332961.2 NaN 13961 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17637 74.541 NaN 831580 35 0 297280 0.264 -1 0 52 413.19354773523565 824.3725425372713 2 413.19354248046875 MULTI HCD FTMS 0 0 0 17634 342044.4375 0.29516649984806725 63 -1.4134750366210938 3 NaN NaN 2 {I|L} 1 -1 8.2268 0 0 0.99795 0 0 155.09545621090257 553.1712130182249 708.2666692291275 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.99795 - 6 + NaN NaN 216176.7 NaN 13962 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17638 74.544 NaN 933370 35 0 359850 0.261 + 12042 KIHRKNSVCH 10 58 407.8930318540906 1220.6572661624718 3 407.8930358886719 MULTI HCD FTMS 0 0 0 17634 198594.03125 0.4632397711810163 -7 0.2000732421875 4 Unmodified _KIHRKNSVCH_ ENST00000272163.8_1_1:225607117-225607493:-|nuORF 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 252158.2 NaN 13963 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17639 74.548 NaN 528740 35 0 79479 0.261 + 25536 SFLPSQTSDWF 11 72 438.8716215136892 1313.5930351412676 3 439.2062072753906 MULTI HCD FTMS 0 0 0 17634 100697.53125 0.7718422532674275 -2 0.05240631103515625 5 Unmodified _SFLPSQTSDWF_ ENSG00000187997|ENST00000340363|C17orf99 12.227587767072771 0.3505430386502343 2 AY 2 11 39.196 0 0 2.9839 0 0 0 1076.4689408266925 1076.4689408266925 10.172203223519531 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 AY 2.9839 - 46 + NaN NaN 177216.8 NaN 13964 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17640 74.551 NaN 120270 35 0 17563 0.261 + 19225 NKGTNIKR 8 54 465.7774798005486 929.5404066678972 2 465.7772216796875 MULTI HCD FTMS 0 0 0 17634 83793.171875 0.7519371334267162 5 -0.13428497314453125 6 Unmodified _NKGTNIKR_ REV__ENSG00000153317|ENST00000518721|ASAP1;REV__nc|ENSG00000153317|Q9ULH1-2|ASAP1 2.0597508629832335 0.5389364538378849 2 V 1 -1 3.9794 0 0 0.4281 0 0 130.1552881149659 697.2945650690061 827.449853183972 0 0 0 0 0 0 0 0 0 V 0.4281 - 13 + NaN NaN 107086.3 NaN 13965 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17641 74.554 NaN 285070 35 0 37895 0.261 + 29258 TYLPAGQSVLL 11 70 581.3281774258924 1160.6418019185846 2 581.3271484375 MULTI HCD FTMS 0 0 0 17634 62462.453125 0.6504879843261828 -3 0.08203125 7 Unmodified _TYLPAGQSVLL_ ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1 24.881564428377168 0.24028852512227317 2 [YT]{I|L}PQQ[VS]{I|L}{I|L} 10 2 + 50.463 0 0 4.3478 4.3478 90.597 0 0 0 14.929155219028942 40.96910013008056 14.929155219028942 50.46265935169153 0 1.3807196863200843 1.6989700043360187 0 0 [YT]{I|L}PQQ[VS]{I|L}{I|L} 4.3478 - 98 NaN NaN 141330.5 NaN 13966 3673 17634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17643 74.559 NaN 351430 35 0 28565 0.326 -1 DPACPEIKIQL 11 64 642.3369114102928 1282.6592698873856 2 642.3375854492188 MULTI HCD FTMS 0 0 0 17642 178748.859375 0.1800609749532956 6 -0.16721343994140625 1 Carbamidomethyl (C) _DPAC(Carbamidomethyl (C))PEIKIQL_ ENSG00000076864|ENST00000374765|RAP1GAP;ENST00000471600.6_1_1:21924215-21924573:-|nuORF;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP 23.789781309258295 0.24980126723476595 2 TAN{I|L}Q{I|L} 6 -1 77.286 0 0 6.0255 0 0 624.3000355451187 0 624.3000355451187 0 58.07803014928544 0 0 0 1.9247425010840047 0 0.6139829889124311 0.7742275032520141 TAN{I|L}Q{I|L} 6.0255 - 491 NaN NaN 143340.3 NaN 13967 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17644 74.564 NaN 335250 35 0 42861 0.262 + 5226 FFDAELSQM 9 61 544.2417306025113 1086.4689082718226 2 544.2417602539062 MULTI HCD FTMS 0 0 0 17642 104988.703125 0.0634813074293668 19 -0.5260467529296875 2 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 63.960520009940105 0.0120409805053046 2 AE{I|L}SQM 6 3 60.634 0 0 5.5808 0 0 409.1630116193375 0 409.1630116193375 0 52.53456848539245 0 0 0 1.805462187404089 0 0.9698565171985375 0 + AE{I|L}SQM 5.5808 + + 149 NaN NaN 142224.9 NaN 13968 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17645 74.567 NaN 212390 35 0 27692 0.261 + -1 GWRRKWFCRKW 11 50 555.9625404342091 1664.8657919028274 3 556.2964477539062 MULTI HCD FTMS 0 0 0 17642 13525.1923828125 0.13014539474005685 1 -0.02614593505859375 3 Carbamidomethyl (C) _GWRRKWFC(Carbamidomethyl (C))RKW_ REV__ENST00000565716.1_1_16:2511058-2514276:+|nuORF;REV__nc|ENSG00000162062|Q7L2K0-3|TEDC2 0 0.41892066650488113 2 {I|L}AE{M(Oxidation (M))|F}A 5 -1 56.938 0 0 3.42 0 0 0 1130.5767818528325 1130.5767818528325 41.453650195120844 0 0 0 0 0.5 1.3979400086720375 0 0 {I|L}AE{M(Oxidation (M))|F}A 3.42 - 20 + NaN NaN 125314 NaN 13969 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17646 74.571 NaN 390650 35 0 82636 0.261 + 17814 MGCLMVELE 9 69 512.7295571467185 1023.4445613602371 2 512.7301025390625 MULTI HCD FTMS 0 0 0 17642 71645.0859375 0.32300105439013166 -6 0.17047119140625 4 Unmodified _MGCLMVELE_ REV__ENSG00000123124|ENST00000517970|WWP1;REV__nc|ENSG00000123124|Q9H0M0-3|WWP1;REV__nc|ENSG00000123124|Q9H0M0-6|WWP1 16.942295170755138 0.21397866736869717 2 E{I|L} 2 -1 20.445 0 0 1.9977 0 0 763.3071726638183 0 763.3071726638183 0 5.841218823962109 0 0 0 0.4247425010840047 0 0 0 E{I|L} 1.9977 + + 54 NaN NaN 145031 NaN 13970 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17647 74.574 NaN 311740 35 0 113540 0.261 + 23465 RLRHGSSSYPP 11 57 628.8285596789556 1255.642566424711 2 628.8284301757812 MULTI HCD FTMS 0 0 0 17642 87636.1796875 1 0 0 5 Unmodified _RLRHGSSSYPP_ ENSG00000169946|ENST00000407775|ZFPM2;nc|ENSG00000169946|Q8WW38-2|ZFPM2 5.731851221503515 0.39378271418728467 2 P{[ES]|[DT]|[{I|L}C]} 3 10 10.458 0 0 0.83285 0 0 924.489061424025 0 924.489061424025 0 0 0 0 0 0 0 0 0 P{[ES]|[DT]|[{I|L}C]} 0.83285 - 12 NaN NaN 141729.1 NaN 13971 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17648 74.577 NaN 160510 35 0 9874.6 0.262 + 33706 YLAFARELA 9 58 527.2900571197684 1052.5655613063368 2 527.289794921875 MULTI HCD FTMS 0 0 0 17642 19349.505859375 0.053920405066487855 11 -0.30501556396484375 6 Unmodified _YLAFARELA_ REV__ENSG00000116014|ENST00000234371|KISS1R 7.910154910731844 0.2910521888787154 2 {I|L}A{I|L} 3 -1 30.445 0 0 2.8925 0 0 737.3504505841812 0 737.3504505841812 0 10.981362441963327 0 0 0 0.4247425010840047 0 0 0 {I|L}A{I|L} 2.8925 - 28 NaN NaN 114886 NaN 13972 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17649 74.581 NaN 232350 35 0 21408 0.261 -1 WAAALVSPLCF 11 58 617.8180447580312 1233.6215365828623 2 618.31982421875 MULTI HCD FTMS 0 0 0 17642 19650.94140625 0.1501804293920402 14 -0.38330841064453125 7 Carbamidomethyl (C) _WAAALVSPLC(Carbamidomethyl (C))F_ ENST00000527517.1_1_11:812420-812531:+|nuORF 5.296884461304476 0.39569033063702824 2 C(Carbamidomethyl (C)){M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6998 0 0 908.5004169262556 0 908.5004169262556 0 15.484550065040281 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){M(Oxidation (M))|F} 1.6998 + + 30 NaN NaN 130308.8 NaN 13973 3674 17642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17651 74.585 NaN 4738100 35 0 578090 0.327 + 21538 PYLFHVVTF 9 123 561.8028874671302 1121.5912220010603 2 561.80322265625 MULTI HCD FTMS 0 0 0 17650 2788824.5 0.941871649500378 -1 0.02614593505859375 1 Unmodified _PYLFHVVTF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 189.49234813286833 4.2663325471414313E-13 2 PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F} 9 0 + 119.42 0 0 10.647 10.647 95.896 0 0 0 73.57718414256347 16.478174818886373 16.478174818886373 11.965300450137292 0 3.242992819099939 1.5228787452803376 2.0158715643802765 0 + + PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HVTV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HTVV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HTVV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HTVV{M(Oxidation (M))|F} 10.647;9.5807;8.5082;8.298;7.7647;7.2255;6.9139;6.6957;5.8414;5.5562 +;+;-;-;-;-;-;-;-;- + 3064 + NaN NaN 803120.2 NaN 13974 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17652 74.59 NaN 2821100 35 0 506230 0.261 + 28519 TPQFPDMIL 9 91 539.2678202098015 1076.5210874864028 2 539.2681884765625 MULTI HCD FTMS 0 0 0 17650 1760965.125 0.2640470647348715 7 -0.19690704345703125 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 63.960520009940105 0.0120409805053046 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 72.958 0 0 6.7772 6.7772 91.096 0 0 0 5.642492736872612 55.879398290963564 5.642492736872612 11.375918373824817 0 1.8807196863200843 0 1.3338395061109687 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[VP][YN]PD{M(Oxidation (M))|F}{I|L}{I|L} 6.7772;5.7204;5.4408;4.5494 -;-;-;- 748 NaN NaN 521251.2 NaN 13975 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17653 74.593 NaN 1365200 35 0 122710 0.261 + 13720 KYPLNLYLL 9 101 568.8392990268862 1135.6640451205724 2 568.8395385742188 MULTI HCD FTMS 0 0 0 17650 484751.65625 0.6228746062776969 -1 0.02614593505859375 3 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 78.14939416004806 0.006451203201226903 2 [Y{I|L}]KPN{I|L}Y{I|L}{I|L} 9 3 + 69.826 0 0 6.1485 6.1485 86.224 0 0 0 4.960762528683702 16.47817481888638 4.960762528683702 4.960762528683702 0 1.7302046884880937 1.2218487496163564 0 1.079689690656103 [Y{I|L}]KPN{I|L}Y{I|L}{I|L};[YK]{I|L}PN{I|L}Y{I|L}{I|L};[{I|L}P][YK]N{I|L}Y{I|L}{I|L};[Y{I|L}]KPGG{I|L}Y{I|L}{I|L};[Y{I|L}]VQPKY{I|L}{I|L};[YK]{I|L}PGG{I|L}Y{I|L}{I|L};[Y{I|L}]KPN{I|L}{I|L}Y{I|L};[Y{I|L}]{I|L}NPKY{I|L}{I|L};[{I|L}P][YK]GG{I|L}Y{I|L}{I|L};[YK]{I|L}PN{I|L}{I|L}Y{I|L} 6.1485;5.7117;5.5625;5.3377;5.1388;4.9009;4.868;4.7637;4.7516;4.4312 -;-;-;-;-;-;-;-;-;- 2284 NaN NaN 292437.8 NaN 13976 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17654 74.597 NaN 469530 35 0 47306 0.261 + 25261 SATLVDEVF 9 65 490.7504054516969 979.4862579701938 2 490.7501525878906 MULTI HCD FTMS 0 0 0 17650 84499.109375 0.24485843926998455 5 -0.1410675048828125 4 Unmodified _SATLVDEVF_ ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 54.773552608820026 0.024892918755467567 2 DEV{M(Oxidation (M))|F} 4 5 43.66 0 0 4.4574 0 0 471.26966319993664 0 471.26966319993664 0 15.831049931792549 0 0 0 1.6747425010840047 0 0.25 0 + DEV{M(Oxidation (M))|F} 4.4574 + + 225 + NaN NaN 157465.4 NaN 13977 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17655 74.6 NaN 264860 35 0 17784 0.261 + 33009 YAWEQPTL 8 67 504.2442022948122 1006.4738516564245 2 504.24395751953125 MULTI HCD FTMS 0 0 0 17650 45989.4453125 0.6497641746332924 1 -0.0262451171875 5 Unmodified _YAWEQPTL_ REV__ENST00000404569.5_3_22:39900474-39905499:+|nuORF 26.88365393820708 0.39599352634412927 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QP][WE]T{I|L} 8 -1 + 26.29 0 0 2.6121 2.6121 82.701 0 0 0 10.805840530896589 6.28530614985209 6.28530614985209 6.607733688702378 0 1.0114393726401687 2 0.3494850021680094 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QP][WE]T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WQ][EP]T{I|L} 2.6121;1.9556 -;- 80 + NaN NaN 130717.9 NaN 13978 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17656 74.603 NaN 137680 35 0 10761 0.262 -1 LSSGQCGG 8 50 404.1696931571729 806.3248333811458 2 404.1699523925781 MULTI HCD FTMS 0 0 0 17650 62550.10546875 0.007469901062939453 98 -2.1153945922851562 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LSSGQC(Carbamidomethyl (C))GG_ ENST00000476870.5_1_7:100468185-100470922:+|nuORF 4.75600775471527 0.5349361699807423 2 E 1 -1 3.9794 0 0 0.49352 0 0 373.16707910399697 301.1016024225219 674.2686815265189 0 0 0 0 0 0 0 0 0 E 0.49352 - 3 + NaN NaN 94966.2 NaN 13979 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17657 74.607 NaN 105010 35 0 13087 0.261 + 17743 MDSLADYAL 9 44 499.728467107876 997.442381282552 2 499.72833251953125 MULTI HCD FTMS 0 0 0 17650 37938.93359375 1 0 0 7 Unmodified _MDSLADYAL_ ENSG00000167800|ENST00000335385|TBX10 7.910154910731844 0.2910521888787154 2 A{I|L} 2 7 25.969 0 0 2.6036 0 0 795.3091353372923 0 795.3091353372923 0 15.511525224473813 0 0 0 0.5 0 0 0 + A{I|L} 2.6036 + + 9 NaN NaN 102175.8 NaN 13980 3675 17650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17659 74.612 NaN 2114700 35 0 314110 0.327 + 26662 SYADQMFLL 9 93 552.2575992815406 1102.500645629881 2 552.2579345703125 MULTI HCD FTMS 0 0 0 17658 1662181.375 0.8738851720838875 6 -0.17066192626953125 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 118.0683919894846 0.0016252157255221692 2 ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7 2 89.844 0 0 8.1491 0 0 250.09497267890782 0 250.09497267890782 0 66.61236583892361 0 0 0 2.274227503252014 0 1.4163865622122673 1.024227503252014 + ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.1491 + + 648 NaN NaN 431020.9 NaN 13981 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17660 74.616 NaN 641820 35 0 62980 0.261 + 5141 FEVGGSPSNTR 11 89 575.7790808213467 1149.5436087094934 2 575.7927856445312 MULTI HCD FTMS 0 0 0 17658 38368.28125 0.053769409535651375 37 -1.0127105712890625 2 Unmodified _FEVGGSPSNTR_ ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-2|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC;PPP3CC-PIWIL2|1|fusion 15.248480904072842 0.3242218977034194 2 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 8 9 45.461 0 0 3.9547 0 0 0 128.04464037672076 128.04464037672076 14.860805071145897 0 0 0 0 0 1.0969100130080565 1.066901560044258 0 [YT]VY{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 3.9547 - 2332 NaN NaN 192054 NaN 13982 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17661 74.62 NaN 289410 35 0 24445 0.263 -1 0 75 435.2510723915091 868.4875918498183 2 435.2510986328125 MULTI HCD FTMS 0 0 0 17658 254369.890625 0.6380372779591552 22 -0.5955963134765625 3 NaN NaN 2 Q 1 -1 7.2429 0 0 0.83397 0 0 326.1940812851678 411.22492395572505 737.4190052408928 0 0 0 0 0 0.5649093276264391 0 0 0 Q 0.83397 - 7 + NaN NaN 132116.1 NaN 13983 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17662 74.623 NaN 296370 35 0 26371 0.261 -1 0 63 497.2757135837385 496.2684371171385 1 497.2649841308594 MULTI HCD FTMS 0 0 0 17658 108872.921875 0.4846989960389987 4 -0.1148223876953125 4 NaN NaN 2 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 4 -1 + 35.005 0 0 7.0537 7.0537 94.36 0 0 0 5.228787452803374 30.568109453757657 5.228787452803374 35.00508444608478 0 0.8807196863200843 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 7.0537 - 21 NaN NaN 140669.7 NaN 13984 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17663 74.626 NaN 55044 35 0 4295.3 0.261 + 12168 KKKKKKVKKI 10 32 419.3155547429291 NaN 0 419.3155517578125 PEAK HCD FTMS 0 0 0 17658 95502.3828125 0.8213948810448441 50 -1.203033447265625 5 Unmodified _KKKKKKVKKI_ REV__ENSG00000187257|ENST00000334955|RSBN1L 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97373.8 NaN 13985 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17664 74.63 NaN 509770 35 0 49499 0.261 + 22820 QYLPAIRALW 10 80 615.8532766506562 1229.6920003681123 2 615.8536376953125 MULTI HCD FTMS 0 0 0 17658 107615.65625 0.4810514373008716 -4 0.10477447509765625 6 Unmodified _QYLPAIRALW_ ENSG00000120063|ENST00000439174|GNA13;nc|ENSG00000120063|Q14344-2|GNA13 56.17704186161178 0.05532499666593632 2 [YQ]{I|L}PA{I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}W 10 2 + 41.04 0 0 3.3374 3.3374 81.382 0 0 0 7.16067799904571 0.8835425015587361 0.8835425015587361 2.332329818107823 0 1.25 1.0457574905606752 0 0 [YQ]{I|L}PA{I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}W;{[CT]|[{M(Oxidation (M))|F}G]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}AP{I|L}SW 3.3374;3.1477 -;- 734 + NaN NaN 171627 NaN 13986 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17665 74.633 NaN 319530 35 0 30381 0.261 + 9090 HPFFNDFTF 9 78 586.2640275861357 1170.5135022390714 2 586.2645263671875 MULTI HCD FTMS 0 0 0 17658 83741.1328125 0.17167621908948283 -10 0.2786102294921875 7 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 6 41.995 0 0 3.5877 0 0 757.3199330060562 0 757.3199330060562 0 19.943415770716157 0 0 0 1.305462187404089 0 0.4247425010840047 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3.5877 + + 191 NaN NaN 135024 NaN 13987 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17666 74.636 NaN 156710 35 0 25108 0.262 + 241 AFDPTSTLL 9 47 482.753225046204 963.4918971592081 2 482.7531433105469 MULTI HCD FTMS 0 0 0 17658 83174.5390625 0.7302485447454964 -3 0.0785369873046875 8 Unmodified _AFDPTSTLL_ ENSG00000183751|ENST00000568546|TBL3 49.93300154707207 0.03166451819912738 2 {[MS]|[{M(Oxidation (M))|F}A]}DPTST{I|L}{I|L} 9 0 + 65.099 0 0 6.7566 6.7566 94.771 0 0 0 5.6424927368725974 58.63290021996811 5.6424927368725974 65.09881272697172 0 1.9247425010840047 0 0.4247425010840047 0 + + {[MS]|[{M(Oxidation (M))|F}A]}DPTST{I|L}{I|L} 6.7566 + + 72 NaN NaN 113190.1 NaN 13988 3676 17658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17668 74.641 NaN 2949700 35 0 476010 0.327 + 21788 QAIGIEVEL 9 88 486.274122241672 970.533691550144 2 486.27410888671875 MULTI HCD FTMS 0 0 0 17667 1752802.125 0.964343990844575 -3 0.08196258544921875 1 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 134.295615338601 0.00034446139420701925 2 [QA]{I|L}G{I|L}EVE{I|L} 9 0 + 72.941 0 0 7.5155 7.5155 86.67 0 0 0 0.12212299665709736 16.47817481888638 0.12212299665709736 0.12212299665709736 0 2.278659694992122 0 1.110924374808178 1.6025684359364407 + + [QA]{I|L}G{I|L}EVE{I|L};[Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[QA]VA{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};[QA]{I|L}G{I|L}D{I|L}E{I|L};[Q{I|L}]AG{I|L}D{I|L}E{I|L};[QA]{I|L}G{I|L}EV{I|L}E;[VP][Q{I|L}]{[CA]|SS}VE{I|L};[Q{I|L}]Q{I|L}D{I|L}E{I|L} 7.5155;7.503;6.9992;6.9591;6.9465;5.4548;5.4422;5.34;5.0244;4.9384 +;-;-;-;-;-;-;-;-;- + 655 NaN NaN 541060.9 NaN 13989 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17669 74.646 NaN 1275100 35 0 132130 0.261 + 12243 KLFIGGLSF 9 86 491.29196639069636 980.5693798481927 2 491.29205322265625 MULTI HCD FTMS 0 0 0 17667 439019.75 0.618496111239763 -3 0.08196258544921875 2 Unmodified _KLFIGGLSF_ AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000170144|ENST00000392524|HNRNPA3;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;nc|ENSG00000170144|P51991-2|HNRNPA3 107.1870275148908 0.00340162908551068 2 [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F} 9 0 + 79.249 0 0 8.082 8.082 90.313 0 0 0 7.376430167995878 36.85312330954795 7.376430167995878 6.720449851406514 0 2.5994850021680094 0 0.3807196863200844 0.2614393726401688 + + [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}N{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}GGS{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}NS{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}G{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}K{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{I|L}K{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}N{M(Oxidation (M))|F}{I|L}K{I|L}{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{[DA]|[EG]}K{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}S{M(Oxidation (M))|F}{I|L}K{I|L}{M(Oxidation (M))|F} 8.082;7.3966;6.7785;6.0931;5.2568;4.1505;4.0983;3.8089;3.6449;3.6281 +;-;-;-;-;-;-;-;-;- + 647 NaN NaN 280704 NaN 13990 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17670 74.649 NaN 574620 35 0 26222 0.261 + 27226 SYNNFFRMF 9 92 613.2762343731825 1224.537915813165 2 613.2767333984375 MULTI HCD FTMS 0 0 0 17667 208270.546875 0.12620360685531562 12 -0.32076263427734375 3 Unmodified _SYNNFFRMF_ ENSG00000156475|ENST00000394411|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A 106.94017166704063 0.003441928997083001 2 [YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F} 9 2 + 66.135 0 0 5.4008 5.4008 90.277 0 0 0 6.036844569512311 46.909874802350956 6.036844569512311 18.876939542437043 0 2.3935078169319297 0 0.7302046884880937 1.350576203518622 [YN]SN{M(Oxidation (M))|F}{M(Oxidation (M))|F}RM{M(Oxidation (M))|F};[Y{I|L}][WH]{M(Oxidation (M))|F}NN[MT];[Y{I|L}][WH]{M(Oxidation (M))|F}GGN[MT];[Y{I|L}][WH]{M(Oxidation (M))|F}NGG[MT];[R{M(Oxidation (M))|F}][YK]{[YC]|[HE]}N[MT] 5.4008;3.8593;3.1073;3.1073;0.4931 -;-;-;-;- 635 NaN NaN 177482.9 NaN 13991 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17671 74.653 NaN 542380 35 0 63074 0.261 + 1102 AYILGRINF 9 76 533.8058871025495 1065.597221271899 2 533.806396484375 MULTI HCD FTMS 0 0 0 17667 223023.890625 0.47690967966810216 4 -0.11486053466796875 4 Unmodified _AYILGRINF_ tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1 50.855029805455786 0.030374663808198754 2 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 8 5 60.482 0 0 5.6759 0 0 132.1557807179558 0 132.1557807179558 0 34.27948461635836 0 0 0 1.5 0 0 1.0356668758921828 SE{I|L}[DP]{I|L}N{M(Oxidation (M))|F} 5.6759 - 457 + NaN NaN 169975.2 NaN 13992 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17672 74.656 NaN 312210 35 0 36012 0.261 + 29259 TYLPAGQSVLL 11 77 581.3281774258924 1160.6418019185846 2 581.329345703125 MULTI HCD FTMS 0 0 0 17667 64611.19140625 0.6728650823024291 1 -0.02617645263671875 5 Unmodified _TYLPAGQSVLL_ ENSG00000167085|ENST00000300408|PHB1;nc|ENSG00000167085|P35232-2|PHB1 27.088373467376528 0.22106052561220446 2 [YT]{I|L}[YG]YR{I|L} 8 6 33.421 0 0 2.8796 0 0 0 128.06852970608625 128.06852970608625 16.43175948177209 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [YT]{I|L}[YG]YR{I|L} 2.8796 - 138 NaN NaN 140047.1 NaN 13993 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17673 74.659 NaN 223860 35 0 12228 0.261 -1 RCDENCLSC 9 65 578.713060081125 1155.41156722905 2 578.7130126953125 MULTI HCD FTMS 0 0 0 17667 102571.6796875 0.8199461274658556 7 -0.19353485107421875 6 2 Carbamidomethyl (C) _RC(Carbamidomethyl (C))DENC(Carbamidomethyl (C))LSC_ ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6 1.6526216038709556 0.33848895094777925 2 CC 2 -1 14.693 0 0 1.2716 0 0 0 946.3578585260374 946.3578585260374 9.291746928241125 0 0 0 0 0 0 0 0 CC 1.2716 - 15 + NaN NaN 121482.7 NaN 13994 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17674 74.663 NaN 153210 35 0 19736 0.261 + 7527 FWVGFVLLW 9 56 583.8231822169654 1165.6318115007307 2 583.82275390625 MULTI HCD FTMS 0 0 0 17667 65188.31640625 0.23732639183188764 12 -0.32076263427734375 7 Unmodified _FWVGFVLLW_ ENSG00000109066|ENST00000335464|TMEM104 9.347437153973935 0.2795965555214564 2 {I|L}W 2 7 30.969 0 0 2.6569 0 0 848.4585459751432 0 848.4585459751432 0 25.395906230238126 0 0 0 1 0 0 0 + {I|L}W 2.6569 + + 63 + NaN NaN 134794.6 NaN 13995 3677 17667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17676 74.667 NaN 1893300 35 0 828330 0.327 + 27911 TEFRNFIVW 9 84 606.3134384514576 1210.6123239697151 2 606.2999877929688 MULTI HCD FTMS 0 0 0 17675 111994.0546875 0.6133179636317709 -1 0.02617645263671875 1 Unmodified _TEFRNFIVW_ ENSG00000087302|ENST00000261700|RTRAF 13.042465956692817 0.2476723265019929 2 YPQ{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VW 8 6 41.191 0 0 3.4025 0 0 113.11294383260822 0 113.11294383260822 0 13.108572192907957 0 0 0 0.9247425010840047 0 0 0.3807196863200844 YPQ{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VW 3.4025 - 435 + NaN NaN 379017 NaN 13996 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17677 74.672 NaN 1224200 35 0 165670 0.261 + 35630 YYIFIPSKF 9 67 589.318133034262 1176.621713135324 2 589.318603515625 MULTI HCD FTMS 0 0 0 17675 447515.4375 0.01602892964398665 26 -0.7156219482421875 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 69.10491478415734 0.009377850133389008 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 84.549 0 0 7.1858 7.1858 93.228 0 0 0 11.413143358550528 11.413143358550528 11.413143358550528 17.71652514092061 0 2.3737125054200234 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};{I|L}YY{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}V{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}V{[NV]|[RG]}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YV{[NV]|[RG]}{M(Oxidation (M))|F};[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 7.1858;5.6801;5.2312;4.5986;4.4307;3.9901;3.7255;2.6441;2.4761;2.2872 -;-;-;-;-;-;-;-;-;- 988 NaN NaN 281794.6 NaN 13997 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17678 74.675 NaN 402060 35 0 32292 0.262 + 1066 AYGSLFNTI 9 66 493.2529702421401 984.4913875510803 2 493.25299072265625 MULTI HCD FTMS 0 0 0 17675 151786.359375 0.49602752211598605 5 -0.14778900146484375 3 Unmodified _AYGSLFNTI_ ENSG00000137944|ENST00000260508|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-2|KYAT3;nc|ENSG00000137944|Q6YP21-3|KYAT3 131.26759243768294 0.0005280990274065272 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]NT{I|L} 9 2 + 68.615 0 0 6.9696 6.9696 87.07 0 0 0 27.46462170693448 25.858565581929653 25.858565581929653 3.4678748622465605 0 1.1861818737241734 2 0.6747425010840047 0.6694451763165201 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]QNT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[Y{I|L}]GGT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}][AG]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]QGGT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA[Y{I|L}]GGT{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}[Y{I|L}]NT{I|L};[YQ]A[Y{I|L}]NT{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{I|L}{I|L}SGS{M(Oxidation (M))|F} 6.9696;6.6173;6.4384;5.6765;5.4976;5.4976;5.3542;3.9697;3.9205;3.9089 -;-;-;-;-;-;-;-;-;- 484 NaN NaN 153017.5 NaN 13998 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17679 74.679 NaN 299710 35 0 18907 0.261 + 11215 IYKPVTDFFL 10 81 621.8419310433534 1241.6693091535067 2 621.84228515625 MULTI HCD FTMS 0 0 0 17675 64731.43359375 0.25045807556632665 5 -0.14778900146484375 4 Unmodified _IYKPVTDFFL_ ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF 45.739877483867886 0.09559676962230333 2 {I|L}YKV 4 6 54.196 0 0 4.3648 0 0 0 735.3360689752561 735.3360689752561 38.979400086720375 0 0 0 0 0.9247425010840047 2 0 0 {I|L}YKV 4.3648 - 554 + NaN NaN 130583.4 NaN 13999 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17680 74.682 NaN 318320 35 0 42537 0.261 + 23714 RQPYIWLTI 9 58 595.3400046815829 1188.6654564299656 2 595.3402709960938 MULTI HCD FTMS 0 0 0 17675 33944.66796875 0.2836485177565712 1 -0.02619171142578125 5 Unmodified _RQPYIWLTI_ ENSG00000081923|ENST00000648908|ATP8B1 47.748688679222035 0.03472022231463587 2 {I|L}W{I|L}T{I|L} 5 4 52.519 0 0 4.4183 0 0 544.265916892775 0 544.265916892775 0 37.91447825603967 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + {I|L}W{I|L}T{I|L} 4.4183 + + 54 NaN NaN 147157.7 NaN 14000 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17681 74.685 NaN 1192200 35 0 110950 0.261 + 27159 SYNIKYSNF 9 106 568.2742672697476 1134.5339816062951 2 569.75927734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SYNIKYSNF_ REV__tr|U7T474|U7T474_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00282PE=4SV=1 12.531546534597751 0.2520865569484384 2 ED{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 8 -1 35.22 0 0 3.1043 0 0 143.97248798116135 0 143.97248798116135 0 5.064119211036626 0 0 0 0 0 0.3054621874040891 1.0356668758921828 ED{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 3.1043 - 1306 + NaN NaN 269864.8 NaN 14001 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17682 74.689 NaN 223580 35 0 17615 0.261 -1 MPSLPEMMF 9 84 557.7338755650824 1113.4531981969646 2 557.7335205078125 MULTI HCD FTMS 0 0 0 17675 44421.2265625 0.3632650839467008 -10 0.2786102294921875 7 2 Oxidation (M) _MPSLPEM(Oxidation (M))M(Oxidation (M))F_ ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL 26.88365393820708 0.12808753336095696 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 27.747 0 0 2.492 0 0 654.302049705275 0 654.302049705275 0 13.67931555708239 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.492 + + 110 NaN NaN 119749.2 NaN 14002 3678 17675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17684 74.694 NaN 694090 35 0 181260 0.327 + 18705 MYPYIFHVL 9 78 599.8021437863842 1197.5897346395684 2 599.8021850585938 MULTI HCD FTMS 0 0 0 17683 378466.3125 0.28196950882089933 11 -0.30735015869140625 1 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 109.15424536547461 0.003080475237576971 2 [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L} 9 0 + 71.766 0 0 5.9926 5.9926 93.112 0 0 0 5.6424927368725974 51.57673934921631 5.6424927368725974 50.33189593851451 0 2.66944517631652 0 0 0 + + [Y{M(Oxidation (M))|F}]PY{I|L}{M(Oxidation (M))|F}HV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[RE]|[WV]}[PG]V{M(Oxidation (M))|F}Y{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}ME{M(Oxidation (M))|F}Y{I|L};[HV]{M(Oxidation (M))|F}{I|L}ME{M(Oxidation (M))|F}Y{I|L} 5.9926;1.7898;1.3394;1.2967 +;-;-;- + 394 NaN NaN 198314.7 NaN 14003 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17685 74.698 NaN 1347800 35 0 102860 0.261 + 35968 YYVRAWVVF 9 103 601.8238621292932 1201.6331713253862 2 602.3280029296875 MULTI HCD FTMS 0 0 0 17683 369483.65625 0.3700379499716857 19 -0.5136566162109375 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 11.640296217721598 0.25978676193971967 2 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[KS]V 8 7 29.046 0 0 2.4172 0 0 0 261.12814783376035 261.12814783376035 14.61680837750819 0 0 0 0 0.6989700043360187 2 0.3807196863200844 0 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[KS]V 2.4172 - 1620 NaN NaN 300806.5 NaN 14004 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17686 74.702 NaN 1032800 35 0 398940 0.264 + -1 CLYLINANLK 10 47 407.8930318540906 1220.6572661624718 3 407.8929443359375 MULTI HCD FTMS 0 0 0 17683 385377.0625 0.8989292433778128 -1 0.02619171142578125 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LYLINANLK_ REV__ENSG00000126775|ENST00000247178|ATG14;REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 246592.9 NaN 14005 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17687 74.705 NaN 130000 35 0 10009 0.261 + 31239 VVQVQRAN 8 60 457.2643155749803 912.5140782167606 2 457.2643737792969 MULTI HCD FTMS 0 0 0 17683 58893.46484375 0.404548775453735 6 -0.170684814453125 4 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 2.302733041254933 0.5385759549224092 2 A[WY] 3 8 2.6761 0 0 0.29326 0 0 474.32219696851683 0 474.32219696851683 0 -0.4228813896716548 -0.4228813896716548 0 0 0 0 0 0 A[WY] 0.29326 - 7 + NaN NaN 100888.1 NaN 14006 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17688 74.708 NaN 161200 35 0 23226 0.261 + 25537 SFLPSQTSDWF 11 41 438.8716215136892 1313.5930351412676 3 438.8716125488281 MULTI HCD FTMS 0 0 0 17683 30721.126953125 0.15722766892110182 6 -0.170684814453125 5 Unmodified _SFLPSQTSDWF_ ENSG00000187997|ENST00000340363|C17orf99 8.751783647060863 0.3805383164556717 2 AY 2 11 38.188 0 0 2.9071 0 0 0 1076.4693914649179 1076.4693914649179 14.006375246153908 0 0 0 0 0.5 1.5228787452803376 0 0 AY 2.9071 - 21 + NaN NaN 109135 NaN 14007 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17689 74.712 NaN 121190 35 0 15611 0.261 + 16667 LWIMIALA 8 48 465.7774798005486 929.5404066678972 2 465.77716064453125 MULTI HCD FTMS 0 0 0 17683 37802.35546875 0.33922805608019146 11 -0.30735015869140625 6 Unmodified _LWIMIALA_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 2.8892196856762586 0.5377058178582064 2 [W{I|L}]{M(Oxidation (M))|F} 3 5 23.301 0 0 2.5067 0 0 0 480.2956962280273 480.2956962280273 22.331655954731247 0 0 0 0 0 1.5228787452803376 0 0 + [W{I|L}]{M(Oxidation (M))|F} 2.5067 + + 5 NaN NaN 101841.5 NaN 14008 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17690 74.715 NaN 148160 35 0 35758 0.261 + -1 SYISMRTTLGL 11 50 629.3294067382812 NaN 0 629.3294067382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _SYISM(Oxidation (M))RTTLGL_ REV__ENSG00000176884|ENST00000371561|GRIN1;REV__nc|ENSG00000176884|Q05586-2|GRIN1;REV__nc|ENSG00000176884|Q05586-3|GRIN1;REV__nc|ENSG00000176884|Q05586-4|GRIN1;REV__nc|ENSG00000176884|Q05586-5|GRIN1;REV__nc|ENSG00000176884|Q05586-6|GRIN1;REV__nc|ENSG00000176884|Q05586-7|GRIN1 1.3295316138638542 0.3383486451652214 2 S 1 -1 5.4846 0 0 0.43715 0 0 249.11943670555416 915.4395235650999 1164.558960270654 0 0 0 0 0 0 0 0 0 S 0.43715 + + 1 + NaN NaN 121942 NaN 14009 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17691 74.718 NaN 241170 35 0 21168 0.261 + 5578 FLNEKECYF 9 65 596.7717405367722 NaN 0 596.7717895507812 PEAK HCD FTMS 0 0 0 17683 43857.65625 1 0 0 8 Unmodified _FLNEKECYF_ REV__ENSG00000160282|ENST00000397746|FTCD;REV__nc|ENSG00000160282|O95954-2|FTCD;REV__nc|ENSG00000160282|O95954-3|FTCD 10.823927491677226 0.2427956001690155 2 YY 2 -1 10.969 0 0 0.92059 0 0 165.95973762776367 696.4216402643186 862.3813778920824 0 0 0 0 0 0 0 0 0 YY 0.92059 - 36 + NaN NaN 120248.6 NaN 14010 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17692 74.722 NaN 138960 35 0 10980 0.263 + 30055 VFSLHEDNHYR 11 54 472.89313667760825 1415.6575806330247 3 473.54779052734375 MULTI HCD FTMS 0 0 0 17683 31981.181640625 0.9313568236605546 4 -0.1215972900390625 9 Unmodified _VFSLHEDNHYR_ ENSG00000163625|ENST00000295888|WDFY3;nc|ENSG00000163625|Q8IZQ1-2|WDFY3 4.11662792887243 0.40086653484894175 2 [{M(Oxidation (M))|F}V]E 3 8 14.265 0 0 1.0076 0 0 0 1037.4539598536649 1037.4539598536649 12.275071725447406 0 0 0 0 0.3807196863200844 0 0 0 [{M(Oxidation (M))|F}V]E 1.0076 - 9 + NaN NaN 108490.9 NaN 14011 3679 17683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17694 74.726 NaN 2193700 35 0 284960 0.327 + 21539 PYLFHVVTF 9 113 561.8028874671302 1121.5912220010603 2 561.8030395507812 MULTI HCD FTMS 0 0 0 17693 1166622.375 0.39400419090025157 4 -0.10828399658203125 1 Unmodified _PYLFHVVTF_ ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1 189.49234813286833 4.2663325471414313E-13 2 PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F} 9 0 + 113.91 0 0 10.156 10.156 92.775 0 0 0 70.50907468880581 14.973024840566467 14.973024840566467 7.641617082476998 0 3.3182503180159344 1.5228787452803376 1.9916440611282624 0 + + PY{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}HVTV{M(Oxidation (M))|F};[Y{I|L}]P{M(Oxidation (M))|F}HVTV{M(Oxidation (M))|F};P{M(Oxidation (M))|F}Y{I|L}HVVT{M(Oxidation (M))|F};{M(Oxidation (M))|F}PY{I|L}HVVT{M(Oxidation (M))|F};[HV]{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VT{M(Oxidation (M))|F} 10.156;9.4749;8.2454;8.2006;7.8989;6.9712;6.8299;5.7546;5.3913;3.8615 +;+;-;-;-;-;-;-;-;- + 2869 + NaN NaN 422663.3 NaN 14012 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17695 74.731 NaN 668610 35 0 233080 0.263 -1 0 49 413.19354773523565 824.3725425372713 2 413.19342041015625 MULTI HCD FTMS 0 0 0 17693 341235.40625 0.29446834809890976 70 -1.39117431640625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 203328.2 NaN 14013 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17696 74.735 NaN 486580 35 0 39676 0.261 + 6366 FPFYYEIKM 9 80 619.301685253378 1236.5888175735558 2 619.301025390625 MULTI HCD FTMS 0 0 0 17693 207888.890625 0.4747528231703862 -6 0.16721343994140625 3 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 86.33184430468982 0.004622086694044132 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM 9 0 + 95.346 0 0 7.7104 7.7104 89.94 0 0 0 9.864167856113113 71.71449725344253 9.864167856113113 7.257724967479859 0 2.6747425010840047 2 1.079689690656103 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYEK{I|L}M;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YEK{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YKE{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}KY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYKE{I|L}M 7.7104;7.1235;6.5046;6.0766;5.9177;5.7279;5.6279;5.3307;5.2395;5.2307 +;-;-;+;-;-;-;-;-;- + 2738 NaN NaN 176136.8 NaN 14014 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17697 74.738 NaN 666130 35 0 172230 0.262 + 19498 NRCFNEEL 8 71 512.7295571467185 1023.4445613602371 2 512.7296752929688 MULTI HCD FTMS 0 0 0 17693 221810.6875 1 0 0 4 Unmodified _NRCFNEEL_ REV__ENSG00000173531|ENST00000449682|MST1;REV__ENSG00000173531|ENST00000449682|MST1;REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF;REV__ENST00000492329.5_1_3:49721463-49723185:-|nuORF;REV__nc|ENSG00000173531|P26927|MST1;REV__nc|ENSG00000173531|P26927|MST1;REV__nc|ENSG00000186715|Q2TV78-2|MST1L;REV__nc|ENSG00000186715|Q2TV78|MST1L 21.74664581756881 0.4337896562907935 2 VE{I|L} 3 -1 28.817 0 0 2.8157 0 0 664.2411976544937 0 664.2411976544937 0 14.213023788966748 0 0 0 0.4247425010840047 0 0.28872548999643577 0 VE{I|L} 2.8157 - 139 NaN NaN 202014.9 NaN 14015 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17698 74.741 NaN 406380 35 0 42106 0.261 + 22132 QIPELPDPSL 10 68 554.7977828290358 1107.5810127248715 2 554.7977905273438 MULTI HCD FTMS 0 0 0 17693 90920.234375 0.9081172146251802 1 -0.02960968017578125 5 Unmodified _QIPELPDPSL_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 71.70789743142352 0.01556163018108538 2 DP{I|L}[HA]Q{I|L} 7 7 38.927 0 0 3.5146 0 0 315.179002830275 0 315.179002830275 0 30.855523473069333 0 0 0 1.6382104921644451 0 0.6382104921644451 0 DP{I|L}[HA]Q{I|L} 3.5146 - 192 NaN NaN 151404.8 NaN 14016 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17699 74.745 NaN 210980 35 0 29404 0.261 + 5227 FFDAELSQM 9 59 544.2417306025113 1086.4689082718226 2 544.2421875 MULTI HCD FTMS 0 0 0 17693 85019.859375 0.05140716734218549 25 -0.6860427856445312 6 Unmodified _FFDAELSQM_ CON__P13647;CON__Q5XQN5;CON__Q922U2;ENSG00000186081|ENST00000252242|KRT5;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant 49.55428908609986 0.03219431099695407 2 E{I|L}SQM 5 4 56.186 0 0 5.1714 0 0 480.20088393379064 0 480.20088393379064 0 50.70107520596089 0 0 0 1.8494850021680094 0 0.4247425010840047 0 + E{I|L}SQM 5.1714 + + 87 NaN NaN 130524.5 NaN 14017 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17700 74.748 NaN 171400 35 0 21069 0.261 + 28051 TGIFLPILR 9 52 515.3264063159467 1028.6382596986932 2 515.3261108398438 MULTI HCD FTMS 0 0 0 17693 62910.90625 1 0 0 7 Unmodified _TGIFLPILR_ ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7 18.1463463914782 0.20357593197100715 2 CD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 7 36.938 0 0 3.591 0 0 132.20315694690527 268.1299227350219 400.3330796819272 0 0 0 0 0 1.5 0 0 0 CD{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.591 - 71 + NaN NaN 115291 NaN 14018 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17701 74.751 NaN 143050 35 0 7873 0.261 + 21127 PPFYATSIFQL 11 56 642.3369114102928 1282.6592698873856 2 642.837890625 MULTI HCD FTMS 0 0 0 17693 40401.94921875 0.060397985912176745 12 -0.332855224609375 8 Unmodified _PPFYATSIFQL_ ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 7.101721422024254 0.3877749288398915 2 Q{I|L} 2 9 25.217 0 0 1.966 0 0 1023.5069610099348 0 1023.5069610099348 0 7.107412457309078 0 0 0 0.4247425010840047 0 0 0 + Q{I|L} 1.966 + + 137 NaN NaN 116705.6 NaN 14019 3680 17693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17703 74.756 NaN 793910 35 0 121510 0.326 + 26663 SYADQMFLL 9 74 552.2575992815406 1102.500645629881 2 552.2579345703125 MULTI HCD FTMS 0 0 0 17702 487334.46875 0.2562141367310193 11 -0.30324554443359375 1 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 76.82478488871298 0.006879825292024087 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 81.08 0 0 7.3542 7.3542 92.562 0 0 0 3.65279269351241 68.30388048385639 3.65279269351241 12.703037561203843 0 2.274227503252014 0 1.1989700043360187 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[PS]{I|L}Y[CS]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}C[QT]{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[PS]{I|L}YA[MT];{[{M(Oxidation (M))|F}C]|[YS]}N{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F}E{I|L};{[CP]|[EA]}[RH][C(Carbamidomethyl (C))K]A[MT] 7.3542;6.202;4.1878;1.4464;1.2576;0.7462;0.19808;0.10586;0.10131 +;-;-;-;-;-;-;-;- + 443 NaN NaN 218768.5 NaN 14020 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17704 74.761 NaN 1007800 35 0 126470 0.261 + 13721 KYPLNLYLL 9 98 568.8392990268862 1135.6640451205724 2 568.8394165039062 MULTI HCD FTMS 0 0 0 17702 471432.96875 0.6057609520472516 5 -0.1375885009765625 2 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 92.8221339359638 0.0044520161739443126 2 [Y{I|L}]KPN{I|L}Y{I|L}{I|L} 9 3 + 86.516 0 0 7.6181 7.6181 89.065 0 0 0 5.574544198219073 16.478174818886373 5.574544198219073 5.574544198219073 0 1.8807196863200843 1.3979400086720375 0 1.5189301784845295 [Y{I|L}]KPN{I|L}Y{I|L}{I|L};[YK]{I|L}PN{I|L}Y{I|L}{I|L};[Y{I|L}]KPGG{I|L}Y{I|L}{I|L};[Y{I|L}]N[KP]{I|L}Y{I|L}{I|L};[YK]{I|L}PGG{I|L}Y{I|L}{I|L};[Y{I|L}]KPN{I|L}{I|L}Y{I|L};[Y{I|L}]VQPKY{I|L}{I|L};[K{I|L}]YPN{I|L}Y{I|L}{I|L};[Y{I|L}]{I|L}NPKY{I|L}{I|L};[Y{I|L}]N{I|L}PKY{I|L}{I|L} 7.6181;7.1272;6.8072;6.3169;6.3164;6.0833;6.0779;5.9267;5.7538;5.6577 -;-;-;-;-;-;-;-;-;- 3233 NaN NaN 251700.4 NaN 14021 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17705 74.764 NaN 1115000 35 0 178920 0.261 + 28520 TPQFPDMIL 9 89 539.2678202098015 1076.5210874864028 2 539.2681274414062 MULTI HCD FTMS 0 0 0 17702 483619.34375 0.07251606880414074 13 -0.35858917236328125 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 43.77239144664712 0.04802738721622131 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 6 3 36.956 0 0 3.4329 0 0 326.159471580275 0 326.159471580275 0 13.2663107655185 0 0 0 1.579689690656103 0 0.6237125054200234 0 + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 3.4329 + + 358 NaN NaN 264860.5 NaN 14022 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17706 74.767 NaN 709790 35 0 63368 0.261 + 3758 ENRGFASQLE 10 94 575.7790808213467 1149.5436087094934 2 575.7926635742188 MULTI HCD FTMS 0 0 0 17702 41797.26953125 0.058574802667184483 42 -1.0210952758789062 4 Unmodified _ENRGFASQLE_ REV__ENSG00000172869|ENST00000539542|DMXL1;REV__nc|ENSG00000172869|Q9Y485|DMXL1 13.042465956692817 0.38911719078024076 2 [YT]VY{M(Oxidation (M))|F}TNE 8 -1 39.691 0 0 3.4527 0 0 0 129.07519985623085 129.07519985623085 4.351029889834749 0 0 0 0 0 1.0969100130080565 0.3807196863200844 0.3054621874040891 [YT]VY{M(Oxidation (M))|F}TNE 3.4527 - 3272 NaN NaN 202058.8 NaN 14023 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17707 74.771 NaN 250730 35 0 87151 0.261 + 3636 ELFPYGNLRI 10 49 611.3356208396712 1220.6566887461422 2 611.3357543945312 MULTI HCD FTMS 0 0 0 17702 57993.6171875 0.34526528911243476 1 -0.0262298583984375 5 Unmodified _ELFPYGNLRI_ REV__ENSG00000171365|ENST00000376091|CLCN5;REV__nc|ENSG00000171365|P51795-1|CLCN5 0.6976657623105312 0.47161084886498755 2 Y 1 -1 3.0989 0 0 0.25388 0 0 649.3126468533673 405.2615145318969 1054.5741613852642 0 0 0 0 0 0 0 0 0 Y 0.25388 + + 3 + NaN NaN 141400.3 NaN 14024 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17708 74.774 NaN 370760 35 0 19666 0.262 + 28297 TLTFEAVLD 9 86 504.7661797545807 1007.5178065759615 2 504.76593017578125 MULTI HCD FTMS 0 0 0 17702 33418.74609375 0.3279574983102244 2 -0.05910491943359375 6 Unmodified _TLTFEAVLD_ REV__HEATR5B|p.E695D|1|0.19|ENSG00000008869|chr2:37057455-37057455|T/G|missense_variant 16.942295170755138 0.21397866736869717 2 M{I|L}TAMD{I|L} 7 -1 49.13 0 0 4.8764 0 0 0 229.11921106510002 229.11921106510002 23.26683554084717 0 0 0 0 0.8182503180159344 0 1.3737125054200234 0 M{I|L}TAMD{I|L} 4.8764 - 590 + NaN NaN 154412.9 NaN 14025 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17709 74.777 NaN 113150 35 0 10385 0.262 + -1 IGSSNGCQ 8 50 404.1696931571729 806.3248333811458 2 404.1699523925781 MULTI HCD FTMS 0 0 0 17702 43998.23046875 0.005254386480773725 104 -2.2849807739257812 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IGSSNGCQ_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|98|2|sense 4.75600775471527 0.5349361699807423 2 E 1 -1 3.9794 0 0 0.49352 0 0 373.1669357976088 301.1024263971313 674.2693621947401 0 0 0 0 0 0 0 0 0 E 0.49352 - 2 + NaN NaN 114847.6 NaN 14026 3681 17702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17711 74.782 NaN 549920 35 0 92030 0.327 + 21789 QAIGIEVEL 9 57 486.274122241672 970.533691550144 2 486.2741394042969 MULTI HCD FTMS 0 0 0 17710 352716.875 0.19405521822705865 2 -0.0524444580078125 1 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 69.10491478415734 0.009377850133389008 2 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 54.905 0 0 5.6572 5.6572 83.533 0 0 0 5.162574822053543 41.203220225610494 5.162574822053543 0.4305997461732147 0 1.5172203223519531 0 0.6989700043360187 1.341129063296272 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L} 5.6572;5.6128;5.4785;4.3949;3.9573 -;-;-;-;- 127 NaN NaN 183787.1 NaN 14027 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17712 74.787 NaN 905360 35 0 99848 0.261 + 12244 KLFIGGLSF 9 82 491.29196639069636 980.5693798481927 2 491.29205322265625 MULTI HCD FTMS 0 0 0 17710 370388.6875 0.5218078750806765 2 -0.0524444580078125 2 Unmodified _KLFIGGLSF_ AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000170144|ENST00000392524|HNRNPA3;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;nc|ENSG00000135486|P09651-2|HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;nc|ENSG00000170144|P51991-2|HNRNPA3 107.1870275148908 0.00340162908551068 2 [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F} 9 0 + 77.616 0 0 7.9154 7.9154 89.974 0 0 0 7.262036441594191 21.117646881713767 7.262036441594191 6.522496736287451 0 2.579689690656103 0 0.4247425010840047 0.25 + + [K{I|L}]{M(Oxidation (M))|F}{I|L}GG{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}N{I|L}S{M(Oxidation (M))|F};[K{I|L}]{M(Oxidation (M))|F}{I|L}G{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{I|L}[K{I|L}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}[K{I|L}]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}GG{I|L}{M(Oxidation (M))|F}{I|L}K;[K{I|L}]{M(Oxidation (M))|F}{I|L}G[{M(Oxidation (M))|F}E]K;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}N{I|L}{M(Oxidation (M))|F}{I|L}K;{[QV]|[N{I|L}]|[RA]|[KV]}S{M(Oxidation (M))|F}{I|L}[K{I|L}]{M(Oxidation (M))|F};{[TV]|[{I|L}S]}N{M(Oxidation (M))|F}{I|L}[K{I|L}]{M(Oxidation (M))|F} 7.9154;7.2502;5.2698;4.4157;4.062;3.751;3.6139;3.3974;3.2346;3.1943 +;-;-;-;-;-;-;-;-;- + 423 NaN NaN 240359.2 NaN 14028 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17713 74.79 NaN 823900 35 0 122150 0.261 + 9091 HPFFNDFTF 9 87 586.2640275861357 1170.5135022390714 2 586.2643432617188 MULTI HCD FTMS 0 0 0 17710 375783.15625 0.77038641938317 -4 0.1149139404296875 3 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 78.7280429016045 0.006263961847259105 2 S{M(Oxidation (M))|F}E[QT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 8 5 61.464 0 0 5.251 0 0 165.07953072586753 0 165.07953072586753 0 31.994784489444967 0 0 0 1.2302046884880937 0 1.1549471895720984 0.4247425010840047 S{M(Oxidation (M))|F}E[QT]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5.251 - 861 + NaN NaN 222108 NaN 14029 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17714 74.794 NaN 252890 35 0 22903 0.264 -1 LETLPPAS 8 66 435.2360418184836 NaN 0 435.2509460449219 PEAK HCD FTMS 0 0 0 17710 4021.958740234375 1 0 0 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LETLPPAS_ ENST00000336273.7_1_8:98656485-98656635:+|nuORF 5.230669730166228 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 -1 3.4949 0 0 0.40242 0 0 176.07504169361977 529.3396090143186 705.4146507079383 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.40242 - 9 + NaN NaN 140563 NaN 14030 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17715 74.797 NaN 733340 35 0 44638 0.261 + 22821 QYLPAIRALW 10 107 615.8532766506562 1229.6920003681123 2 615.8533935546875 MULTI HCD FTMS 0 0 0 17710 91496.9453125 0.4089993834072574 2 -0.0524444580078125 5 Unmodified _QYLPAIRALW_ ENSG00000120063|ENST00000439174|GNA13;nc|ENSG00000120063|Q14344-2|GNA13 41.8396318013385 0.12944265636084 2 [YN]AW 4 7 33.787 0 0 2.7476 0 0 0 692.4459835146957 692.4459835146957 0.08355938871737578 0 0 0 0 0 1.3979400086720375 0 0.5994850021680094 [YN]AW 2.7476 - 4140 NaN NaN 206923.3 NaN 14031 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17716 74.8 NaN 370410 35 0 29392 0.263 -1 0 76 497.2757135837385 496.2684371171385 1 497.2650146484375 MULTI HCD FTMS 0 0 0 17710 19962.009765625 0.08887027119036917 10 -0.27701568603515625 6 NaN NaN 2 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 4 -1 + 27.224 0 0 5.4857 5.4857 91.192 0 0 0 2.843181179205061 21.53720958383822 2.843181179205061 27.22357194224834 0 0.8807196863200843 0 0 0 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{M(Oxidation (M))|F} 5.4857 - 17 NaN NaN 158921.3 NaN 14032 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17717 74.804 NaN 224080 35 0 44477 0.261 + 15659 LPEGVEPLL 9 48 483.77911733569147 965.543681738183 2 483.7789306640625 MULTI HCD FTMS 0 0 0 17710 81693.953125 0.9006761686698151 -4 0.1149139404296875 7 Unmodified _LPEGVEPLL_ ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN 11.640296217721598 0.25978676193971967 2 P{I|L}{I|L} 3 6 31.198 0 0 3.2311 0 0 624.3117230160336 0 624.3117230160336 0 24.20818753952375 0 0 0 0.5 0 0 0 + P{I|L}{I|L} 3.2311 + + 24 NaN NaN 136624.7 NaN 14033 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17718 74.807 NaN 353760 35 0 20836 0.261 + 29988 VFISSSLNTF 10 81 557.792345220731 1113.570137508262 2 557.7931518554688 MULTI HCD FTMS 0 0 0 17710 115120.1640625 0.7349104614430106 -4 0.1149139404296875 8 Unmodified _VFISSSLNTF_ ENSG00000105254|ENST00000221855|TBCB;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENST00000481742.1_1_19:36606435-36607215:+|nuORF 110.79276546118962 5.020237097528524E-05 2 [{M(Oxidation (M))|F}V]{I|L}SSS{I|L}NT{M(Oxidation (M))|F} 10 0 + 79.834 0 0 7.1692 7.1692 92.305 0 0 0 7.269987279362624 74.2612048846186 7.269987279362624 12.971736348700105 0 2.9802046884880937 0 0.9392404878284264 0.3807196863200844 + + [{M(Oxidation (M))|F}V]{I|L}SSS{I|L}NT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{I|L}SSS{I|L}GGT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{I|L}SSS[QT]V{M(Oxidation (M))|F};[YV][{I|L}A]SS{I|L}NT{M(Oxidation (M))|F};[YV][{I|L}A]SS{I|L}GGT{M(Oxidation (M))|F};[YV][{I|L}A]SS[QT]V{M(Oxidation (M))|F} 7.1692;6.0044;5.8969;4.1577;2.9928;2.8853 +;-;-;-;-;- + 612 NaN NaN 142659.9 NaN 14034 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17719 74.81 NaN 175820 35 0 16496 0.261 + 10190 IFVARLYYF 9 57 596.3319370633487 1190.6493211934974 2 596.3314208984375 MULTI HCD FTMS 0 0 0 17710 50488.9140625 0.6364487070134144 5 -0.12420654296875 9 Unmodified _IFVARLYYF_ APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G 34.10243960390752 0.09241788333544565 2 YY{M(Oxidation (M))|F} 3 6 31.198 0 0 2.6202 0 0 699.4426136701187 0 699.4426136701187 0 0 0 0 0 0.5 0 0 0 + YY{M(Oxidation (M))|F} 2.6202 + + 38 NaN NaN 121625.1 NaN 14035 3682 17710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17721 74.815 NaN 8868300 35 0 4064700 0.327 + 17290 LYPQFMFHL 9 91 606.2992549835044 1210.5839570338087 2 606.300048828125 MULTI HCD FTMS 0 0 0 17720 3768398 0.24041709236030326 -5 0.14778900146484375 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 117.59872219059416 0.0017018906413822257 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 95.455 0 0 7.8851 7.8851 93.038 0 0 0 53.88953098408422 7.147642715192504 7.147642715192504 11.034087492996392 0 2.6989700043360187 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YPQ{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VW;{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}VW;[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}[HM]Y{I|L} 7.8851;6.9736;6.5576;6.3879;6.213;5.4007;4.7804;4.3205;3.9075;3.7674 +;-;-;+;-;-;-;-;-;- + 1655 + NaN NaN 1212843.4 NaN 14036 3683 17720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17722 74.82 NaN 1129400 35 0 146050 0.261 + 35631 YYIFIPSKF 9 77 589.318133034262 1176.621713135324 2 589.3184814453125 MULTI HCD FTMS 0 0 0 17720 418531.65625 0.014990800114716615 31 -0.8351287841796875 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 82.5293158979368 0.005033931517079822 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 83.299 0 0 7.0795 7.0795 93.084 0 0 0 24.13734275855269 47.10077508221467 24.13734275855269 18.226825097560422 0 2.1237125054200234 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YYPSK{M(Oxidation (M))|F};[RH]SP{M(Oxidation (M))|F}MKK{M(Oxidation (M))|F} 7.0795;5.5304;4.4431;4.1314;3.7693;3.6197;2.7708 -;-;-;-;-;-;- 1062 NaN NaN 262299.4 NaN 14037 3683 17720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17723 74.823 NaN 475290 35 0 46092 0.261 + 19837 NYAWVYYHL 9 82 614.7927243454062 1227.5708957576123 2 614.793212890625 MULTI HCD FTMS 0 0 0 17720 116379.2421875 0.3174777085321582 -27 0.748260498046875 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.0072241045649327805 2 [YN]AWVYYH{I|L} 9 0 + 97.401 0 0 7.9344 7.9344 94.863 0 0 0 13.552659518797938 13.552659518797938 13.552659518797938 20.255762612236907 0 2.8494850021680094 1.6989700043360187 0 0.7302046884880937 + + [YN]AWVYYH{I|L};[YN]AWVW[YN]{I|L};[YN]AWVY[VG]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[YQ]GWVYYH{I|L};[WY]{[QG]|[NA]}VYYH{I|L};[Y{I|L}]EEV[QT]S{M(Oxidation (M))|F}{I|L};[Y{I|L}]EEV[QT]S{I|L}{M(Oxidation (M))|F};[HN]P[{M(Oxidation (M))|F}V]{[SA]|[TG]}{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{[SA]|[TG]}YR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[KA][{M(Oxidation (M))|F}E]{[SA]|[TG]}YR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 7.9344;6.2844;5.8626;4.7939;2.9509;1.5202;1.0298;0.49047;0.17633;0.17633 +;-;-;-;-;-;-;-;-;- + 1246 NaN NaN 181109.1 NaN 14038 3683 17720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17724 74.827 NaN 301980 35 0 37599 0.262 + 10476 IPDPSTWNL 9 67 521.7636800604698 1041.5128071877396 2 522.2511596679688 MULTI HCD FTMS 0 0 0 17720 5550.13818359375 0.15079545860981045 -2 0.05910491943359375 4 Unmodified _IPDPSTWNL_ ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1 21.536976647645854 0.1742816388551942 2 {M(Oxidation (M))|F}[MT]VS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 8 30.221 0 0 2.9017 0 0 164.10296881189305 0 164.10296881189305 0 4.797983607408387 0 0 0 0 0 0.8494850021680094 0 {M(Oxidation (M))|F}[MT]VS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9017 - 92 + NaN NaN 133452.2 NaN 14039 3683 17720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17725 74.83 NaN 247200 35 0 34898 0.261 -1 LISMECYDI 9 71 572.2567366878536 1142.4989204425071 2 572.2567138671875 MULTI HCD FTMS 0 0 0 17720 62438.19921875 0.24817322085672586 -4 0.1215972900390625 5 Carbamidomethyl (C) _LISMEC(Carbamidomethyl (C))YDI_ ENSG00000261609|ENST00000648994|GAN 18.13498045792455 0.20367413111508956 2 {I|L}{I|L}{I|L} 3 -1 23.672 0 0 2.072 0 0 785.2352548148036 0 785.2352548148036 0 13.138181262758266 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L}{I|L} 2.072 - 29 NaN NaN 130203.6 NaN 14040 3683 17720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17727 74.835 NaN 671950 35 0 69068 0.327 + 35969 YYVRAWVVF 9 55 601.8238621292932 1201.6331713253862 2 602.3283081054688 MULTI HCD FTMS 0 0 0 17726 178917.53125 0.17918594058988235 24 -0.662841796875 1 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 7.910154910731844 0.2910521888787154 2 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L} 6 7 23.306 0 0 1.9395 0 0 0 462.23153493306125 462.23153493306125 4.151603310239906 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L} 1.9395 - 173 NaN NaN 187797 NaN 14041 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17728 74.839 NaN 458210 35 0 37052 0.262 + 11031 IYESVSPLT 9 61 504.7661797545807 1007.5178065759615 2 504.78411865234375 MULTI HCD FTMS 0 0 0 17726 24241.568359375 0.2378965414188227 5 -0.127227783203125 2 Unmodified _IYESVSPLT_ REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|19 23.1484247019978 0.1603590852062899 2 M{I|L}TA[MD]{I|L} 7 -1 49.028 0 0 4.8663 0 0 0 229.11886011295158 229.11886011295158 29.19547293177743 0 0 0 0 0.4247425010840047 0 1.6549471895720984 0 M{I|L}TA[MD]{I|L} 4.8663 - 141 + NaN NaN 156997.9 NaN 14042 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17729 74.843 NaN 520170 35 0 180290 0.262 + 15186 LMVESRQLVF 10 51 407.8930318540906 1220.6572661624718 3 408.22772216796875 MULTI HCD FTMS 0 0 0 17726 66353.390625 0.22814156216980422 4 -0.10781097412109375 3 Unmodified _LMVESRQLVF_ REV__ENSG00000075420|ENST00000415807|FNDC3B 2.0860074813731053 0.46426213543441425 2 {M(Oxidation (M))|F} 1 -1 11.783 0 0 0.96528 0 0 1055.5784525411812 0 1055.5784525411812 0 7.178642847807186 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.96528 + + 6 + NaN NaN 170323.5 NaN 14043 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17730 74.846 NaN 302400 35 0 22671 0.261 -1 YLFCFSFLF 9 84 622.2945906513638 NaN 0 622.2935791015625 PEAK HCD FTMS 0 0 0 17726 65900.078125 0.5396240522908597 -2 0.0524444580078125 4 Carbamidomethyl (C) _YLFC(Carbamidomethyl (C))FSFLF_ nc|ENSG00000184922|O95466-3|FMNL1 23.1484247019978 0.16626532474190622 2 SN{I|L} 3 -1 15.445 0 0 1.243 0 0 652.2713579611276 273.1244680780477 925.3958260391753 0 0 0 0 0 0.4247425010840047 0 0 0 SN{I|L} 1.243 - 96 + NaN NaN 131235.1 NaN 14044 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17731 74.849 NaN 88148 35 0 5309 0.262 + 25122 SAFSSWEEL 9 47 528.2377908954722 1054.4610288577444 2 528.2388916015625 MULTI HCD FTMS 0 0 0 17726 24749.46875 0.4579466765447268 2 -0.0589141845703125 5 Unmodified _SAFSSWEEL_ ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3470835-3470958:-|nuORF 24.020572477871973 0.15282392193088168 2 WEE{I|L} 4 5 32.665 0 0 3.0978 0 0 479.20152480293126 0 479.20152480293126 0 27.180475292681265 0 0 0 0.8252574989159953 0 0 0 + WEE{I|L} 3.0978 + + 19 NaN NaN 93103.2 NaN 14045 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17732 74.853 NaN 106770 35 0 9652.9 0.261 + 23206 RFLSGIINF 9 53 533.8058871025495 1065.597221271899 2 533.8060302734375 MULTI HCD FTMS 0 0 0 17726 48775.20703125 0.10429989493875014 11 -0.304351806640625 6 Unmodified _RFLSGIINF_ ENSG00000143228|ENST00000271452|NUF2 21.536976647645854 0.1742816388551942 2 {I|L}N{M(Oxidation (M))|F} 3 6 42.435 0 0 3.9823 0 0 673.3910883146708 0 673.3910883146708 0 42.346368802282015 0 0 0 1.5 0 0 0.4247425010840047 + {I|L}N{M(Oxidation (M))|F} 3.9823 + + 25 + NaN NaN 103407.1 NaN 14046 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17733 74.856 NaN 109740 35 0 12108 0.261 -1 0 39 632.6513684068169 NaN 0 632.3043212890625 PEAK HCD FTMS 0 0 0 17726 37471.3359375 1 0 0 7 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.55329 0 0 862.0559889114869 285.1242769830688 1147.1802658945558 0 0 0 0 0 0 0 0 0 {I|L} 0.55329 - 4 + NaN NaN 114317.4 NaN 14047 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17734 74.859 NaN 236120 35 0 75421 0.262 + 14980 LLIVRWSY 8 58 525.3108276528798 1048.6071023725594 2 525.3108520507812 MULTI HCD FTMS 0 0 0 17726 36830.7734375 0.0704230673006697 -12 0.327880859375 8 Unmodified _LLIVRWSY_ REV__ENSG00000204923|ENST00000377957|FBXO48 8.593279151180031 0.5292430274356741 2 T 1 -1 3.0989 0 0 0.29553 0 0 166.07184384347028 778.4609469049436 944.5327907484138 0 0 0 0 0 0 0 0 0 T 0.29553 - 10 + NaN NaN 119699.1 NaN 14048 3684 17726 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17736 74.864 NaN 1221100 35 0 130070 0.327 + 21522 PYIYVNQII 9 104 561.8135148459119 1121.6124767586236 2 561.8026733398438 MULTI HCD FTMS 0 0 0 17735 94975.3515625 0.3879905484463297 -3 0.08196258544921875 1 Unmodified _PYIYVNQII_ ENSG00000126773|ENST00000406854|PCNX4 30.224811164608877 0.11021837014094292 2 PY{I|L}{M(Oxidation (M))|F}[HV]VT 8 5 66.035 0 0 5.8875 0 0 0 162.05600916080314 162.05600916080314 -0.4415784460158392 0 -0.4415784460158392 0 0 0.5 1.5228787452803376 1.5451140161145327 0 PY{I|L}{M(Oxidation (M))|F}[HV]VT 5.8875 - 1871 + NaN NaN 274185.9 NaN 14049 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17737 74.869 NaN 945610 35 0 92524 0.261 + 35970 YYVRAWVVF 9 79 601.8238621292932 1201.6331713253862 2 602.3284912109375 MULTI HCD FTMS 0 0 0 17735 254597.59375 0.2549795371604453 25 -0.6787643432617188 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 8.593279151180031 0.2858735984551981 2 [Y{I|L}]WW{I|L}{I|L}Y 7 7 25.371 0 0 2.1114 0 0 0 161.05454576104663 161.05454576104663 1.4358511412897492 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]WW{I|L}{I|L}Y 2.1114 - 526 NaN NaN 231301.1 NaN 14050 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17738 74.872 NaN 398130 35 0 21331 0.261 + 7700 FYLLISKTF 9 80 566.3261024031813 1130.6376518731624 2 566.326416015625 MULTI HCD FTMS 0 0 0 17735 76905.203125 0.4784292260665243 -1 0.02951812744140625 3 Unmodified _FYLLISKTF_ ENSG00000107949|ENST00000278100|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP;nc|ENSG00000107949|Q9P287-3|BCCIP;nc|ENSG00000107949|Q9P287-4|BCCIP 106.94017166704063 0.003441928997083001 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}SKT{M(Oxidation (M))|F} 9 0 + 90.896 0 0 8.0393 8.0393 97.378 0 0 0 2.434239665113722 71.43175948177209 2.434239665113722 90.89570963353275 0 3.3494850021680094 0 0.5796896906561032 0 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}SKT{M(Oxidation (M))|F} 8.0393 + + 284 NaN NaN 144954.2 NaN 14051 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17739 74.875 NaN 276310 35 0 18557 0.261 + 25533 SFLFVHPEW 9 75 581.2897061827445 1160.5648594322888 2 581.2901000976562 MULTI HCD FTMS 0 0 0 17735 84409.21875 0.8846882504775175 -1 0.02951812744140625 4 Unmodified _SFLFVHPEW_ ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 47.748688679222035 0.03472022231463587 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}VH[EP]W 9 0 + 69.359 0 0 5.9763 5.9763 84.534 0 0 0 16.197887582883936 1.4612803567823818 1.4612803567823818 1.4612803567823818 0 2 2 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}VH[EP]W;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}VHW[EP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}VH{[DA]|[EG]}[EP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}[DG]{M(Oxidation (M))|F}{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{M(Oxidation (M))|F}]V{M(Oxidation (M))|F}{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}V{[C(Carbamidomethyl (C))E]|[WC]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}V[R{M(Oxidation (M))|F}][MD];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}[DG][H{I|L}][EP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[PA]{[QS]|[NT]}W[EP];{[MG]|[TS]}{[QN]|[E{I|L}]|[KN]}HV{M(Oxidation (M))|F}{I|L}{[ES]|[DT]|[{I|L}C]} 5.9763;5.8504;5.0569;4.5806;4.3606;4.1892;4.0633;3.3578;2.6258;2.5049 +;-;-;-;-;-;-;-;-;- + 159 NaN NaN 127358 NaN 14052 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17740 74.879 NaN 242790 35 0 30893 0.264 -1 YLCMTDEWF 9 58 422.172495780675 NaN 0 422.1722412109375 PEAK HCD FTMS 0 0 0 17735 97427.4296875 0.6634339361743782 -3 0.08196258544921875 5 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))MTDEWF_ ENSG00000108578|ENST00000261714|BLMH;ENST00000578795.1_1_17:28576037-28576226:-|nuORF 5.296884461304476 0.2695788793730278 2 {I|L} 1 -1 4.6041 0 0 0.54659 0 0 594.1785659248281 132.04512964420158 726.2236955690297 0 0 0 0 0 0 0 0 0 {I|L} 0.54659 + + 2 + NaN NaN 122844.6 NaN 14053 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17741 74.882 NaN 3287700 35 0 332660 0.261 + 21218 PQRCMTSI 8 97 468.22575904729626 934.4369651613925 2 468.2255859375 MULTI HCD FTMS 0 0 0 17735 39323.3828125 0.3668304071302823 -2 0.0490875244140625 6 Unmodified _PQRCMTSI_ REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF 42.09456458481378 0.20402248593209013 2 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H 7 -1 + 84.646 0 0 9.0585 9.0585 91.327 0 0 0 6.052411322156161 6.052411322156161 6.052411322156161 6.052411322156161 0 1.7302046884880937 1.6989700043360187 0 0.28872548999643577 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;P{[CA]|SS}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{[ET]|[MV]}[WQ];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}QP{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}T{M(Oxidation (M))|F}{[CA]|SS}P;{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AGP{I|L};[H{I|L}]{M(Oxidation (M))|F}T{M(Oxidation (M))|F}{[CA]|SS}P 9.0585;8.4108;5.9328;4.5363;3.6203;3.1323;3.0716;3.0074;2.9248;2.1138 -;-;-;-;-;-;-;-;-;- 901 + NaN NaN 596011.4 NaN 14054 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17742 74.885 NaN 74400 35 0 4103.9 0.261 + 23109 RETRAAPL 8 46 457.2643155749803 912.5140782167606 2 457.2642517089844 MULTI HCD FTMS 0 0 0 17735 59836.2265625 0.4110247588226342 12 -0.313568115234375 7 Unmodified _RETRAAPL_ ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF;ENST00000606557.1_1_20:17948856-17948946:-|nuORF 2.302733041254933 0.5385759549224092 2 V 1 8 8.0989 0 0 0.88754 0 0 630.3472213825794 180.07215295963127 810.4193743422106 0 0 0 0 0 0.5 0 0 0 V 0.88754 - 12 + NaN NaN 109471.2 NaN 14055 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17743 74.889 NaN 102600 35 0 12921 0.261 + 23380 RKSTGFDSIKL 11 52 626.3564030474118 NaN 0 626.7728881835938 PEAK HCD FTMS 0 0 0 17735 13508.4443359375 0.8561473574092677 1 -0.02939605712890625 8 Unmodified _RKSTGFDSIKL_ REV__ENSG00000142733|ENST00000357582|MAP3K6;REV__ENSG00000197442|ENST00000359015|MAP3K5;REV__nc|ENSG00000142733|O95382-2|MAP3K6;REV__nc|ENSG00000142733|O95382-3|MAP3K6;REV__nc|ENSG00000197442|Q99683-2|MAP3K5 2.498486711656943 0.3350326561941647 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96624.6 NaN 14056 3685 17735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17745 74.894 NaN 551720 35 0 47278 0.327 + 6367 FPFYYEIKM 9 83 619.301685253378 1236.5888175735558 2 619.301513671875 MULTI HCD FTMS 0 0 0 17744 437888.6875 1 0 0 1 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 118.0683919894846 0.0016252157255221692 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM 9 0 + 96.029 0 0 7.7656 7.7656 89.495 0 0 0 9.414791984916576 9.414791984916576 9.414791984916576 6.00833760139686 0 2.6989700043360187 1.6989700043360187 1.1237125054200234 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YE{I|L}KM;{M(Oxidation (M))|F}P{M(Oxidation (M))|F}YYE{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}YK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYK{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YYE[KP]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y[YE]{M(Oxidation (M))|F}{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}KY{M(Oxidation (M))|F}PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}YKY{M(Oxidation (M))|F}PE;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}PYYE{I|L}KM 7.7656;7.2797;7.0043;6.2173;6.0162;5.6634;5.5957;5.5727;5.3716;5.2648 +;-;+;-;-;-;-;-;-;- + 2967 NaN NaN 174241.2 NaN 14057 3686 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17746 74.898 NaN 1019900 35 0 133200 0.261 + 11435 IYPWVHVVI 9 104 563.3263729838401 1124.63819303448 2 563.3270263671875 MULTI HCD FTMS 0 0 0 17744 388230.09375 0.1223452940065616 13 -0.34636688232421875 2 Unmodified _IYPWVHVVI_ ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 45.7499826716795 0.03894913563566938 2 [Y{I|L}]{[RE]|[WV]}RY{I|L}{I|L} 8 4 + 48.096 0 0 4.2765 4.2765 81.42 0 0 0 15.136824930454011 16.249387366083 15.136824930454011 0.2422750325201406 0 0.5 1.6989700043360187 0.3252574989159953 0 [Y{I|L}]{[RE]|[WV]}RY{I|L}{I|L};[Y{I|L}][WR]VY{I|L}{I|L};[Y{I|L}]{[RE]|[WV]}PVHV{I|L};[Y{I|L}]{[RE]|[WV]}R{I|L}Y{I|L};[Y{I|L}][WR]V{I|L}Y{I|L};[Y{I|L}]{[RE]|[WV]}PVVH{I|L};[Y{I|L}][WR][Y{I|L}]V{I|L} 4.2765;4.255;4.0961;4.0089;3.9873;3.9254;2.6989 -;-;-;-;-;-;- 1248 NaN NaN 243982.3 NaN 14058 3686 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17747 74.902 NaN 702980 35 0 49478 0.261 + 18107 MPAFIFEHI 9 92 552.7809728664606 1103.5473927997211 2 552.781005859375 MULTI HCD FTMS 0 0 0 17744 314459.78125 0.8060961125000371 -2 0.0589141845703125 3 Unmodified _MPAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 97.07464715276575 0.004340583992084827 2 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L} 9 4 + 67.786 0 0 6.1426 6.1426 86.211 0 0 0 20.329693599488294 4.960762528683702 4.960762528683702 4.960762528683702 0 1.6237125054200234 1.154901959985743 0.28872548999643577 0 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L};MPA{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};[PA]M{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{[MS]|[{M(Oxidation (M))|F}A]}PM{I|L}{M(Oxidation (M))|F}EH{I|L};[PA]{M(Oxidation (M))|F}M{I|L}{M(Oxidation (M))|F}EH{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}M{M(Oxidation (M))|F}EH{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[HG]|PP}[QT]{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[HG]|PP}{[NV]|[RG]}EH{I|L};[PA]{M(Oxidation (M))|F}{I|L}M{M(Oxidation (M))|F}EH{I|L} 6.1426;5.6931;4.1785;3.2931;2.741;2.4076;1.7949;1.7617;1.5172;1.4615 -;-;+;-;-;-;-;-;-;- + 1114 + NaN NaN 194431.7 NaN 14059 3686 17744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17749 74.906 NaN 569580 35 0 96114 0.327 + 21790 QAIGIEVEL 9 64 486.274122241672 970.533691550144 2 486.2740783691406 MULTI HCD FTMS 0 0 0 17748 637291.5625 0.35062046077381664 7 -0.20815277099609375 1 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 78.7280429016045 0.006263961847259105 2 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 59.788 0 0 6.1603 6.1603 85.405 0 0 0 5.16257482205355 46.71578086548267 5.16257482205355 2.9440873258899884 0 1.4073871488943874 0 0.6989700043360187 1.4163865622122673 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}V]QQE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}QQE{I|L} 6.1603;5.8569;4.6643;4.0508;3.9913;3.6413 -;-;-;-;-;- 252 NaN NaN 166872.2 NaN 14060 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17750 74.911 NaN 985520 35 0 92239 0.261 + 14569 LFIQGKLLF 9 104 539.8365543507059 1077.6585557682117 2 539.8367309570312 MULTI HCD FTMS 0 0 0 17748 349543.78125 0.6972331836938184 1 -0.03604888916015625 2 Unmodified _LFIQGKLLF_ ENSG00000198960|ENST00000361910|ARMCX6 54.773552608820026 0.024892918755467567 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q[KG]{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 41.806 0 0 3.8793 3.8793 82.814 0 0 0 7.147642715192504 34.816074955301275 7.147642715192504 4.771212547196612 0 1.8494850021680094 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q[KG]{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{I|L}[KG]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG][KG]{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]{I|L}[KG]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{I|L}A{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{I|L}{I|L}{M(Oxidation (M))|F}Q[KG]{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}Q{I|L}[KG]{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}[KG]Q{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[AG]{I|L}A{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{I|L}{I|L}{M(Oxidation (M))|F}[AG][KG]{I|L}{I|L}{M(Oxidation (M))|F} 3.8793;3.4366;3.0249;2.5821;2.4874;2.4515;2.0088;1.7991;1.6329;1.597 +;-;-;-;-;-;-;-;-;- + 1180 NaN NaN 242895.2 NaN 14061 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17751 74.914 NaN 489210 35 0 71594 0.261 + 4390 EYAHLFEVF 9 47 577.7797125730827 1153.5448722129654 2 577.7796020507812 MULTI HCD FTMS 0 0 0 17748 332473.625 0.5195649294761627 -1 0.012847900390625 3 Unmodified _EYAHLFEVF_ ENSG00000130803|ENST00000247956|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317 64.23631603340823 0.01165516075559909 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 3 + 54.86 0 0 4.7558 4.7558 87.851 0 0 0 1.0160559578984163 43.89129674262179 1.0160559578984163 11.505149978319906 0 1.805462187404089 0 1.3494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]E{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[NP]{[TV]|[{I|L}S]}[WY]EV{M(Oxidation (M))|F};[NP]{[TV]|[{I|L}S]}E[WY]V{M(Oxidation (M))|F} 4.7558;3.7584;2.7877;2.2016 -;-;-;- 188 NaN NaN 161081.3 NaN 14062 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17752 74.918 NaN 887260 35 0 139650 0.261 + 30132 VGFAETVVEL 10 79 532.2864497733162 1062.5583466134324 2 532.27197265625 MULTI HCD FTMS 0 0 0 17748 215300.25 0.4759780454552426 -1 0.012847900390625 4 Unmodified _VGFAETVVEL_ ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant 27.628801355627647 0.2527626205058048 2 EVVYY{I|L}{M(Oxidation (M))|F} 7 8 42.836 0 0 4.0314 0 0 131.09015921284487 0 131.09015921284487 0 0.6119790752951815 0 0 0 1.3494850021680094 0 0 0 EVVYY{I|L}{M(Oxidation (M))|F} 4.0314 - 548 + NaN NaN 220120.1 NaN 14063 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17753 74.921 NaN 421610 35 0 45512 0.261 + 35669 YYITGNLETF 10 74 610.7947003883213 1219.5748478434425 2 610.7943725585938 MULTI HCD FTMS 0 0 0 17748 217441.78125 0.5844474686312943 -1 0.012847900390625 5 Unmodified _YYITGNLETF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 145.12958885780327 3.2284611804802265E-07 2 YY{I|L}T[NG]{I|L}ET{M(Oxidation (M))|F} 10 0 + 96.732 0 0 7.9316 7.9316 95.715 0 0 0 22.754537344402905 85.04940636348586 22.754537344402905 31.594919972362206 0 2.2302046884880937 1.6989700043360187 0.3054621874040891 1.5 + + YY{I|L}T[NG]{I|L}ET{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[VP]T[NG]{I|L}ET{M(Oxidation (M))|F};YY{I|L}{[VA]|[{I|L}G]}{[QS]|[NT]}ET{M(Oxidation (M))|F};YY{I|L}[WH]{[CA]|SS}[HK] 7.9316;5.341;5.0393;1.7712 +;-;-;- + 357 NaN NaN 153298.5 NaN 14064 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17754 74.924 NaN 522630 35 0 102710 0.261 + 22919 QYSNAFDVF 9 67 545.7457228491174 1089.4768927650348 2 545.745849609375 MULTI HCD FTMS 0 0 0 17748 273730.8125 0.3502480897945507 -6 0.1504364013671875 6 Unmodified _QYSNAFDVF_ ENSG00000141232|ENST00000499247|TOB1 43.77239144664712 0.04802738721622131 2 {M(Oxidation (M))|F}DV{M(Oxidation (M))|F} 4 5 52.735 0 0 4.8404 0 0 563.2336163094113 0 563.2336163094113 0 48.13100339696028 0 0 0 1.8494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}DV{M(Oxidation (M))|F} 4.8404 + + 198 NaN NaN 164231.1 NaN 14065 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17755 74.928 NaN 283510 35 0 34870 0.261 + 13722 KYPLNLYLL 9 70 568.8392990268862 1135.6640451205724 2 568.8392333984375 MULTI HCD FTMS 0 0 0 17748 153027.25 0.1966301442492672 11 -0.30072784423828125 7 Unmodified _KYPLNLYLL_ ENSG00000155957|ENST00000358230|TMBIM4 52.268347100219714 0.028397529699942435 2 [Y{I|L}][KP]N{I|L}Y{I|L}{I|L} 9 2 + 70.582 0 0 6.2151 6.2151 87.548 0 0 0 7.971062485323515 16.478174818886373 7.971062485323515 7.971062485323515 0 1.8252574989159953 1.3979400086720375 0 0.4247425010840047 [Y{I|L}][KP]N{I|L}Y{I|L}{I|L};[YK][{I|L}P]N{I|L}Y{I|L}{I|L};[Y{I|L}][KP]GG{I|L}Y{I|L}{I|L};[YK][NP]{I|L}{I|L}Y{I|L}{I|L};[YK][{I|L}P]GG{I|L}Y{I|L}{I|L};[{M(Oxidation (M))|F}V]QQ{I|L}{I|L}Y{I|L}{I|L} 6.2151;5.5132;5.4042;5.0717;4.7023;4.3473 -;+;-;-;-;- + 291 NaN NaN 127921.8 NaN 14066 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17756 74.931 NaN 346520 35 0 35032 0.261 -1 MPDFDLNL 8 59 490.7232540056682 979.4319550781364 2 490.72344970703125 MULTI HCD FTMS 0 0 0 17748 168916.328125 0.48225931387471394 -10 0.26529693603515625 8 Oxidation (M) _M(Oxidation (M))PDFDLNL_ ENSG00000124942|ENST00000378024|AHNAK 23.1484247019978 0.4234759064137959 2 {M(Oxidation (M))|F}N{I|L} 3 -1 33.94 0 0 3.4653 0 0 587.2249452837137 0 587.2249452837137 0 9.163865622122671 0 0 0 0.4247425010840047 0 0 0.3494850021680094 {M(Oxidation (M))|F}N{I|L} 3.4653 - 100 NaN NaN 139493.3 NaN 14067 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17757 74.934 NaN 358610 35 0 47990 0.261 -1 VYAEIMAVL 9 60 512.7728193436508 1023.5310857541016 2 512.7728881835938 MULTI HCD FTMS 0 0 0 17748 96075.8984375 0.38916996963530465 -9 0.2391204833984375 9 Oxidation (M) _VYAEIM(Oxidation (M))AVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 26.88365393820708 0.12808753336095696 2 {I|L}{M(Oxidation (M))|F}AV{I|L} 5 -1 46.81 0 0 4.5734 0 0 462.21043593574376 0 462.21043593574376 0 32.830918867322296 0 0 0 1.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}AV{I|L} 4.5734 + + 113 NaN NaN 144968 NaN 14068 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17758 74.938 NaN 382050 35 0 53137 0.261 + 15281 LPAEVLDSL 9 57 478.7686569612561 955.5227609893122 2 478.768310546875 MULTI HCD FTMS 0 0 0 17748 79535.2265625 0.3762705147729428 -1 0.012847900390625 10 Unmodified _LPAEVLDSL_ ENSG00000120708|ENST00000442011|TGFBI;TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant 68.08070601005525 0.009709267492204555 2 V{I|L}DS{I|L} 5 4 56.498 0 0 5.9128 0 0 410.2166920392594 0 410.2166920392594 0 35.300084529637985 0 0 0 1.7302046884880937 0 0.4247425010840047 0 + V{I|L}DS{I|L} 5.9128 + + 141 NaN NaN 145789.9 NaN 14069 3687 17748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17760 74.942 NaN 688000 35 0 85891 0.326 + 9092 HPFFNDFTF 9 74 586.2640275861357 1170.5135022390714 2 586.2642211914062 MULTI HCD FTMS 0 0 0 17759 455701.5 0.9342256060539957 2 -0.05837249755859375 1 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 47.748688679222035 0.03472022231463587 2 {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 3 6 47.945 0 0 4.0961 0 0 757.3191185494214 0 757.3191185494214 0 30.466430335102288 0 0 0 1.5 0 0.6747425010840047 0 + {M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.0961 + + 600 + NaN NaN 191885.8 NaN 14070 3688 17759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17761 74.947 NaN 1305400 35 0 102850 0.261 -1 TPQFPDMIL 9 111 539.2678202098015 1076.5210874864028 2 539.2684326171875 MULTI HCD FTMS 0 0 0 17759 361929.125 0.05426928775679779 20 -0.5550308227539062 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 23.789781309258295 0.1548179064208189 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 38.707 0 0 3.5956 3.5956 89.366 0 0 0 13.217748100551859 12.742053465007114 12.742053465007114 38.70738261167692 0 0.8807196863200843 1.3010299956639813 0.5242275032520141 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L} 3.5956 - 1005 NaN NaN 284070.4 NaN 14071 3688 17759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17762 74.95 NaN 297720 35 0 24580 0.262 + 8159 GPKGAVGRAG 10 81 435.2510723915091 868.4875918498183 2 435.2510070800781 MULTI HCD FTMS 0 0 0 17759 189257.0625 0.47471444318881134 34 -0.825286865234375 3 Unmodified _GPKGAVGRAG_ REV__ENSG00000060718|ENST00000370096|COL11A1;REV__nc|ENSG00000060718|P12107-2|COL11A1;REV__nc|ENSG00000060718|P12107-3|COL11A1;REV__nc|ENSG00000060718|P12107-4|COL11A1 3.2813086475875832 0.45793521633868084 2 Q 1 -1 7.901 0 0 0.90974 0 0 326.19469741798076 411.2236727350219 737.4183701530027 0 0 0 0 0 0.6307196863200843 0 0 0 Q 0.90974 - 65 + NaN NaN 129471.2 NaN 14072 3688 17759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17763 74.954 NaN 273840 35 0 18642 0.261 + -1 KCLRYLCCLL 10 66 642.8347335979674 NaN 0 642.833251953125 PEAK HCD FTMS 0 0 0 17759 93338.8671875 0.871612140029904 -4 0.10781097412109375 4 Carbamidomethyl (C) _KC(Carbamidomethyl (C))LRYLCCLL_ REV__ENSG00000168594|ENST00000359240|ADAM29;REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29;REV__nc|ENSG00000168594|Q9UKF5-3|ADAM29 13.90604991867851 0.3282826376286837 2 {I|L}{M(Oxidation (M))|F} 2 -1 9.8206 0 0 0.76505 0 0 131.09505981177205 889.3848533245222 1020.4799131362943 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 0.76505 - 27 + NaN NaN 130804.4 NaN 14073 3688 17759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17764 74.957 NaN 271360 35 0 19170 0.261 -1 YLFCFSFLF 9 75 622.2945906513638 NaN 0 622.29541015625 PEAK HCD FTMS 0 0 0 17759 117033.5703125 0.9583316327229091 2 -0.05837249755859375 5 Carbamidomethyl (C) _YLFC(Carbamidomethyl (C))FSFLF_ nc|ENSG00000184922|O95466-3|FMNL1 16.942295170755138 0.2079222001251384 2 {I|L}TYC 4 -1 13.928 0 0 1.1209 0 0 327.14233596936714 432.2002352350219 759.3425712043891 0 0 0 0 0 0 0 0 0 {I|L}TYC 1.1209 - 139 + NaN NaN 148135 NaN 14074 3688 17759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17766 74.962 NaN 16708000 35 0 8167800 0.327 + 17291 LYPQFMFHL 9 60 606.2992549835044 1210.5839570338087 2 606.30029296875 MULTI HCD FTMS 0 0 0 17765 8739170 0.5575435081544974 1 -0.0389556884765625 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 97.07464715276575 0.004340583992084827 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 90.882 0 0 7.5073 7.5073 93.567 0 0 0 73.40797194541551 6.7074145675533 6.7074145675533 16.070006276765483 0 2.2416440611282624 2 0 0.6861818737241735 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[Y{I|L}][HM]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H[Y{I|L}]{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Y{I|L}]H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PG]P{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.5073;6.1798;4.9142;4.1535;1.7822;1.6543;1.4704;1.4283;1.3028;0.43786 +;-;+;-;-;-;-;-;-;- + 293 + NaN NaN 633490.3 NaN 14075 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17767 74.966 NaN 3338900 35 0 463390 0.261 + 1406 AYQHLFYLL 9 105 584.313453362459 1166.6123537917179 2 584.3137817382812 MULTI HCD FTMS 0 0 0 17765 1591336.125 0.04185437871079973 -4 0.09770965576171875 2 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 123.09622228370866 0.0010236603636890153 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 99.437 0 0 8.5236 8.5236 93.485 0 0 0 22.79090842403555 36.09924211943138 22.79090842403555 9.214015106945098 0 2.7302046884880937 1.3979400086720375 0.5554621874040891 0.8778623208748889 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};[YQ]AH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[HQ]{M(Oxidation (M))|F}Y{I|L}{I|L} 8.5236;7.7338;7.7319;7.2546;7.1597;6.8479;6.7672;6.6155;6.5529;6.4194 +;-;-;-;-;-;-;-;-;- + 8197 NaN NaN 612563.8 NaN 14076 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17768 74.97 NaN 833200 35 0 108740 0.261 + 35632 YYIFIPSKF 9 79 589.318133034262 1176.621713135324 2 589.3184814453125 MULTI HCD FTMS 0 0 0 17765 348231.09375 0.012472802575815654 37 -0.8526992797851562 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 60.07390631473393 0.0174780869009295 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 79.677 0 0 6.7717 6.7717 90.754 0 0 0 9.78347485907939 13.94811345317251 9.78347485907939 9.78347485907939 0 2.555462187404089 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]Y{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}YPSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YPSK{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}Y[QA]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}[PS][Y{M(Oxidation (M))|F}]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F};[RH]SP{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{M(Oxidation (M))|F} 6.7717;5.9402;5.7857;5.5862;5.4529;4.133;3.482;3.1498;2.8685;2.6945 -;-;-;-;-;-;-;-;-;- 931 NaN NaN 216864.6 NaN 14077 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17769 74.973 NaN 905720 35 0 80625 0.261 + 33711 YLAPVNYGLL 10 107 561.8135148459119 1121.6124767586236 2 561.802978515625 MULTI HCD FTMS 0 0 0 17765 105584.265625 0.43132977612816303 1 -0.0389556884765625 4 Unmodified _YLAPVNYGLL_ REV__ENSG00000111676|ENST00000396684|ATN1 28.486842064014134 0.24531664120168334 2 PY{I|L}{M(Oxidation (M))|F}HVVT 8 -1 73.163 0 0 6.5231 0 0 0 162.0558260553344 162.0558260553344 18.30559233425481 0 0 0 0 0.4247425010840047 1.5228787452803376 1.5629529932484498 0 PY{I|L}{M(Oxidation (M))|F}HVVT 6.5231 - 1191 + NaN NaN 227144.4 NaN 14078 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17770 74.977 NaN 355750 35 0 37741 0.261 -1 LISMECYDI 9 70 572.2567366878536 1142.4989204425071 2 572.2568359375 MULTI HCD FTMS 0 0 0 17765 88363.8046875 0.3512197707628018 2 -0.0645599365234375 5 Carbamidomethyl (C) _LISMEC(Carbamidomethyl (C))YDI_ ENSG00000261609|ENST00000648994|GAN 23.1484247019978 0.1603590852062899 2 {I|L}{I|L}S 3 -1 30.942 0 0 2.7083 0 0 0 826.2768189622915 826.2768189622915 9.30400924012389 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}{I|L}S 2.7083 + + 96 NaN NaN 159039.9 NaN 14079 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17771 74.98 NaN 597800 35 0 45272 0.261 + 19838 NYAWVYYHL 9 92 614.7927243454062 1227.5708957576123 2 614.7930908203125 MULTI HCD FTMS 0 0 0 17765 104179.015625 0.2841960003870291 -21 0.5731964111328125 6 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 2 [YN]AWVYYH{I|L} 9 0 + 98.637 0 0 8.0351 8.0351 96.561 0 0 0 21.689615513722202 16.478174818886373 16.478174818886373 46.6896155137222 0 2.6989700043360187 1.6989700043360187 0 1.3564921830680703 + + [YN]AWVYYH{I|L};[YQ]GWVYYH{I|L};[YN]A[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YN]G[W{I|L}]YYH{I|L};[YN]G{[TV]|[{I|L}S]}V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[YQ]G[VS]V[WR]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[HN]PWV{[DS]|[MA]|[CV]|TT}{I|L}G{[CT]|[{M(Oxidation (M))|F}G]};[HN]PW[Q{I|L}]SV[{M(Oxidation (M))|F}T];[HN]PW[Q{I|L}]S{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]};[HN]P[{M(Oxidation (M))|F}V]{[SA]|[TG]}{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}] 8.0351;4.2317;4.03;3.5329;2.3671;1.9934;1.1195;0.63072;0.57619;0.078968 +;-;-;-;-;-;-;-;-;- + 945 NaN NaN 195787.8 NaN 14080 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17772 74.983 NaN 237040 35 0 18940 0.262 -1 0 57 497.2650292744328 992.5155056156656 2 497.26495361328125 MULTI HCD FTMS 0 0 0 17765 9848.1279296875 0.0276187106192044 9 -0.24526214599609375 7 NaN NaN 2 E{I|L} 2 -1 23.271 0 0 2.3447 0 0 732.3753529279312 0 732.3753529279312 0 0.008403133631986748 0 0 0 0 0 0.3807196863200844 0 E{I|L} 2.3447 - 149 NaN NaN 126170 NaN 14081 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17773 74.987 NaN 330280 35 0 20583 0.261 -1 YLFCFSFLF 9 81 622.2945906513638 NaN 0 622.2959594726562 PEAK HCD FTMS 0 0 0 17765 87100.0078125 0.7132200827014846 3 -0.09734344482421875 8 Carbamidomethyl (C) _YLFC(Carbamidomethyl (C))FSFLF_ nc|ENSG00000184922|O95466-3|FMNL1 23.1484247019978 0.16626532474190622 2 {I|L} 1 -1 11.237 0 0 0.90434 0 0 853.3436541037057 273.12383905167763 1126.4674931553834 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.90434 + + 140 + NaN NaN 153473 NaN 14082 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17774 74.99 NaN 364500 35 0 34242 0.261 + 3718 EMCPVLSGIF 10 70 548.2660415258408 1094.5175301184815 2 548.7677612304688 MULTI HCD FTMS 0 0 0 17765 40402.65625 0.20276958010102994 -4 0.09770965576171875 9 Unmodified _EMCPVLSGIF_ REV__ENSG00000184313|ENST00000421030|MROH7;REV__nc|ENSG00000184313|Q68CQ1-9|MROH7 26.88365393820708 0.25965138844209146 2 G{I|L}{M(Oxidation (M))|F} 3 -1 37.435 0 0 3.4202 0 0 759.3341632745347 0 759.3341632745347 0 23.10418823932851 0 0 0 1.4247425010840047 0 0 0 G{I|L}{M(Oxidation (M))|F} 3.4202 + + 316 + NaN NaN 154256 NaN 14083 3689 17765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17776 75 NaN 548600 35 0 30704 0.327 + 11519 IYSEVATLI 9 84 504.78423660754805 1007.5539202818961 2 504.7843322753906 MULTI HCD FTMS 0 0 0 17775 145518.4375 0.34060083122112234 3 -0.0843658447265625 1 Unmodified _IYSEVATLI_ ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-5|PCM1 74.42276476219924 0.007657080072768255 2 [{I|L}T]{M(Oxidation (M))|F}{[ET]|[MV]}AT{I|L}{I|L} 9 3 + 76.181 0 0 7.561 7.561 94.686 0 0 0 22.376430167995878 62.747811774468474 22.376430167995878 26.020599913279625 0 1.3494850021680094 1.5228787452803376 1.4604093769761874 0 [{I|L}T]{M(Oxidation (M))|F}{[ET]|[MV]}AT{I|L}{I|L};[YV]V{[ET]|[MV]}AT{I|L}{I|L} 7.561;4.9784 -;- 690 NaN NaN 171000.6 NaN 14084 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17777 75.005 NaN 566420 35 0 60897 0.261 + 35971 YYVRAWVVF 9 75 601.8238621292932 1201.6331713253862 2 602.3284912109375 MULTI HCD FTMS 0 0 0 17775 113734.8984375 0.11390552179004637 30 -0.7418212890625 2 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 8.593279151180031 0.2858735984551981 2 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L} 6 7 24.186 0 0 2.0128 0 0 0 462.23025319478 462.23025319478 9.27948461635836 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L} 2.0128 - 261 NaN NaN 175163.9 NaN 14085 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17778 75.008 NaN 872100 35 0 61409 0.261 + 35670 YYITGNLETF 10 106 610.7947003883213 1219.5748478434425 2 611.8101196289062 MULTI HCD FTMS 0 0 0 17775 33812.5390625 0.44257693600087206 2 -0.05838775634765625 3 Unmodified _YYITGNLETF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 75.5705956163825 0.010984675281887875 2 YY{I|L}T[NG]{I|L}E[{M(Oxidation (M))|F}T] 10 0 + 70.227 0 0 5.7583 5.7583 85.789 0 0 0 42.33107862832506 5.764837301042732 5.764837301042732 5.515136206082815 0 1.7249073637206092 1.5228787452803376 0.8065533887547016 0.75 + + YY{I|L}T[NG]{I|L}E[{M(Oxidation (M))|F}T];YYE[KQ]{I|L}E[{M(Oxidation (M))|F}T];YYK{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}E[{M(Oxidation (M))|F}T];YYK[HS]{[NV]|[RG]}{M(Oxidation (M))|F}Y;YYK[QP]HH[{M(Oxidation (M))|F}T];YY{I|L}{[NV]|[RG]}E[TA][{M(Oxidation (M))|F}T];YKY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}E[{M(Oxidation (M))|F}T];[Y{I|L}]YT[NG]{I|L}E[{M(Oxidation (M))|F}T];YY{I|L}T[YE]{I|L}QQ;YY{I|L}{[NV]|[RG]}[TA]E[{M(Oxidation (M))|F}T] 5.7583;5.3061;4.5656;3.0074;2.7208;2.414;2.2245;1.9582;1.8568;1.8485 +;-;-;-;-;-;-;-;-;- + 2123 + NaN NaN 234660.3 NaN 14086 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17779 75.012 NaN 1252100 35 0 224770 0.261 + 4442 EYGPIHILW 9 106 564.2978303293603 1126.5811077255205 2 564.2977905273438 MULTI HCD FTMS 0 0 0 17775 347755.15625 0.23713879915101818 -3 0.09442138671875 4 Unmodified _EYGPIHILW_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 86.12129899796855 0.004627603789867734 2 {I|L}{I|L}{M(Oxidation (M))|F}[DV]{I|L}W 7 7 39.446 0 0 3.5014 0 0 222.10054771052734 0 222.10054771052734 0 11.753486528117048 0 0 0 1.2614393726401687 0 0.28872548999643577 0 {I|L}{I|L}{M(Oxidation (M))|F}[DV]{I|L}W 3.5014 - 1165 + NaN NaN 284611.4 NaN 14087 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17780 75.015 NaN 320650 35 0 35850 0.261 + 3719 EMCPVLSGIF 10 70 548.2660415258408 1094.5175301184815 2 548.26611328125 MULTI HCD FTMS 0 0 0 17775 128945.0546875 0.49401978944568087 -3 0.09442138671875 5 Unmodified _EMCPVLSGIF_ REV__ENSG00000184313|ENST00000421030|MROH7;REV__nc|ENSG00000184313|Q68CQ1-9|MROH7 34.10243960390752 0.1965851268881605 2 MG{I|L}{M(Oxidation (M))|F} 4 -1 41.96 0 0 3.8337 0 0 628.2897296807847 0 628.2897296807847 0 28.760285132803 0 0 0 1.4247425010840047 0 0 0 MG{I|L}{M(Oxidation (M))|F} 3.8337 - 105 + NaN NaN 133377.9 NaN 14088 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17781 75.018 NaN 233970 35 0 18388 0.261 + 17847 MHWLTELEIL 10 69 642.8347335979674 NaN 0 642.8372192382812 PEAK HCD FTMS 0 0 0 17775 71803.09375 0.670507904049072 -2 0.05837249755859375 6 Unmodified _MHWLTELEIL_ ENSG00000115252|ENST00000409365|PDE1A;nc|ENSG00000115252|P54750-2|PDE1A;nc|ENSG00000115252|P54750-3|PDE1A;nc|ENSG00000115252|P54750-4|PDE1A;nc|ENSG00000115252|P54750-5|PDE1A;nc|ENSG00000115252|P54750-7|PDE1A;nc|ENSG00000115252|P54750-8|PDE1A;nc|ENSG00000115252|P54750-9|PDE1A;nc|ENSG00000115252|P54750|PDE1A 14.838274106304384 0.3224471714378502 2 {I|L}E{[QG]|[NA]}YK{M(Oxidation (M))|F} 7 9 20.239 0 0 1.5766 0 0 131.09321720038707 284.1034903980432 415.1967075984303 0 0 0 0 0 0.4247425010840047 0 0 0.3807196863200844 {I|L}E{[QG]|[NA]}YK{M(Oxidation (M))|F} 1.5766 - 68 + NaN NaN 126369.6 NaN 14089 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17782 75.022 NaN 155750 35 0 10639 0.264 + 23296 RHSFPLPL 8 51 483.77911733569147 965.543681738183 2 483.7789001464844 MULTI HCD FTMS 0 0 0 17775 12351.8017578125 0.1361786651011161 4 -0.11373138427734375 7 Unmodified _RHSFPLPL_ ENST00000492502.2_1_10:73973024-73975624:-|nuORF;ENST00000524829.5_1_10:73973024-73975970:-|nuORF;ENST00000526751.5_1_10:73975537-73975624:-|nuORF 7.289230182591677 0.5311777711368266 2 ETC(Carbamidomethyl (C)){I|L} 4 7 14.922 0 0 1.5454 0 0 444.3300719743142 0 444.3300719743142 0 5.880456295278405 0 0 0 0.3494850021680094 0 0 0 ETC(Carbamidomethyl (C)){I|L} 1.5454 - 41 + NaN NaN 109723.6 NaN 14090 3690 17775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17784 75.027 NaN 1193200 35 0 241630 0.327 + 16110 LPTEEEWEF 9 78 590.263313674265 1178.5120744153298 2 590.263916015625 MULTI HCD FTMS 0 0 0 17783 576437.25 0.45693724980036543 -2 0.0645599365234375 1 Unmodified _LPTEEEWEF_ ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-2|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 52.268347100219714 0.028397529699942435 2 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F} 8 6 + 64.174 0 0 5.4453 5.4453 90.791 0 0 0 8.186362358410122 38.2319095436452 8.186362358410122 23.393170903024725 0 1.274227503252014 1.6989700043360187 0.3807196863200844 0 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[QP][PA]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][W{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][W{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WE][Q{I|L}][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4453;3.4604;3.1345;2.9019;2.2947;1.7363;0.49146 -;-;-;-;-;-;- 369 NaN NaN 277547.7 NaN 14091 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17785 75.031 NaN 1484400 35 0 216070 0.261 + 12845 KYFEVPSVLL 10 102 597.8422319297273 1193.6699109262545 2 597.8424072265625 MULTI HCD FTMS 0 0 0 17783 519461.34375 0.25492407837719794 -2 0.0645599365234375 2 Unmodified _KYFEVPSVLL_ ENSG00000131966|ENST00000254286|ACTR10 53.31671820480216 0.06572736166898346 2 [Y{M(Oxidation (M))|F}]KEVPSV{I|L}{I|L} 10 2 + 59.396 0 0 4.9759 4.9759 83.317 0 0 0 2.2454626555970876 16.53212513775344 2.2454626555970876 2.2454626555970876 0 1.774227503252014 0 0.6861818737241735 0 [Y{M(Oxidation (M))|F}]KEVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKVPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YVKPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]D{I|L}KPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EVKPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]KEPVSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKPVSV{I|L}{I|L};[{M(Oxidation (M))|F}V][YE]KPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKPVSV{I|L}{I|L} 4.9759;4.7878;4.3881;4.1798;3.8229;3.78;3.5931;3.405;3.075;3.0053 -;-;-;-;-;-;-;-;-;- 3189 NaN NaN 314872.1 NaN 14092 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17786 75.034 NaN 755810 35 0 241730 0.261 + 10318 ILPGSLFRF 9 71 525.3108276528798 1048.6071023725594 2 525.3110961914062 MULTI HCD FTMS 0 0 0 17783 151510.859375 0.28969957594439744 -5 0.13287353515625 3 Unmodified _ILPGSLFRF_ ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7 45.69961567697781 0.039180348357221985 2 {I|L}{I|L}[Y{I|L}]QPR{M(Oxidation (M))|F} 8 5 + 42.413 0 0 4.0447 4.0447 89.976 0 0 0 7.900217704352457 10.994077049709645 7.900217704352457 42.41312192373542 0 1.6549471895720984 1.6989700043360187 0 0 {I|L}{I|L}[Y{I|L}]QPR{M(Oxidation (M))|F} 4.0447 - 259 + NaN NaN 198858.3 NaN 14093 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17787 75.038 NaN 1577700 35 0 90497 0.261 + 6329 FPFWPAKAL 9 100 538.7998110173886 1075.5850691015771 2 538.7999267578125 MULTI HCD FTMS 0 0 0 17783 188844.0625 0.3999141803986522 -2 0.0645599365234375 4 Unmodified _FPFWPAKAL_ ENSG00000101040|ENST00000471951|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8 81.61307344734483 0.005330412723537057 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}WPAKA{I|L} 9 0 + 66.142 0 0 6.1494 6.1494 86.776 0 0 0 20.314248544354818 12.58741856696816 12.58741856696816 6.465912507003615 0 2.1791746928241125 1.6989700043360187 0.3494850021680094 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}WPAKA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W{M(Oxidation (M))|F}PAKA{I|L};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}WPAKA{I|L};[W{M(Oxidation (M))|F}]P{M(Oxidation (M))|F}PAKA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RD]{[ET]|[MV]}KA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]{[QV]|[N{I|L}]|[RA]|[KV]}P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][RP]{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][RP]A{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[DG][RK]P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RD][KG]P{M(Oxidation (M))|F}{I|L} 6.1494;5.5483;4.2608;2.969;2.655;2.5437;2.2839;2.2062;2.2016;2.1001 +;-;+;-;-;-;-;-;-;- + 549 NaN NaN 332930.8 NaN 14094 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17788 75.041 NaN 410390 35 0 29302 0.261 + 18108 MPAFIFEHI 9 77 552.7809728664606 1103.5473927997211 2 553.2825927734375 MULTI HCD FTMS 0 0 0 17783 71400.515625 0.24688921617994428 3 -0.08812713623046875 5 Unmodified _MPAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 77.98433622928108 0.006504613272346738 2 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 61.392 0 0 5.5632 5.5632 84.876 0 0 0 41.23589978636623 1.354925662989146 1.354925662989146 3.979400086720375 0 1.3494850021680094 1.3979400086720375 0.3494850021680094 0 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}{M(Oxidation (M))|F};MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L};MPAH[{M(Oxidation (M))|F}E]{I|L}{I|L}{M(Oxidation (M))|F};MPAH[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}{I|L};{I|L}DAH[RN]E[H{I|L}] 5.5632;5.2026;4.3599;3.9993;3.6559 -;-;-;-;- 437 + NaN NaN 151840 NaN 14095 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17789 75.044 NaN 985650 35 0 89669 0.261 + 35972 YYVRAWVVF 9 99 601.8238621292932 1201.6331713253862 2 602.3139038085938 MULTI HCD FTMS 0 0 0 17783 127496.3828125 0.12768765093311962 31 -0.7413101196289062 6 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 24.67388899826682 0.14717941214954053 2 [Y{I|L}]YSP{I|L}{[TV]|[{I|L}S]}T 9 7 30.987 0 0 2.5787 0 0 0 161.07667387649772 161.07667387649772 8.495594611605451 0 0 0 0 0 2 0.9436726795685342 0 [Y{I|L}]YSP{I|L}{[TV]|[{I|L}S]}T 2.5787 - 777 NaN NaN 236137.5 NaN 14096 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17790 75.048 NaN 206100 35 0 13132 0.261 + 6527 FPISEETIKLL 11 66 645.3711934171899 1288.7278339011798 2 645.3704223632812 MULTI HCD FTMS 0 0 0 17783 73781.25 0.4024590400763803 -2 0.0645599365234375 7 Unmodified _FPISEETIKLL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 43.981846655682396 0.1113057155252403 2 {M(Oxidation (M))|F}K{I|L}{I|L} 4 7 33.047 0 0 2.5643 0 0 769.38676650215 0 769.38676650215 0 27.320618910682484 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}K{I|L}{I|L} 2.5643 - 97 NaN NaN 115015.8 NaN 14097 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17791 75.051 NaN 2824700 35 0 302650 0.264 + 21219 PQRCMTSI 8 90 468.22575904729626 934.4369651613925 2 468.22601318359375 MULTI HCD FTMS 0 0 0 17783 56765.36328125 0.5295389113049572 4 -0.1125640869140625 8 Unmodified _PQRCMTSI_ REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF 42.09456458481378 0.20402248593209013 2 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H 7 -1 + 84.813 0 0 9.0764 9.0764 92.35 0 0 0 8.47750326371255 8.47750326371255 8.47750326371255 8.47750326371255 0 1.7302046884880937 1.6989700043360187 0 0.3054621874040891 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}H;[QP]{M(Oxidation (M))|F}{[ET]|[MV]}[WQ];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QP]{M(Oxidation (M))|F}H{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}QP{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}AGP{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}[{I|L}T]{M(Oxidation (M))|F}{[CA]|SS}P;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}HQP{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}QP 9.0764;8.1691;5.9328;3.9609;2.8436;2.748;2.6012;1.8927;1.8173;1.7787 -;-;-;-;-;-;-;-;-;- 603 + NaN NaN 512160.5 NaN 14098 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17792 75.054 NaN 288910 35 0 46423 0.261 + 17500 LYTGGDAF 8 56 422.19812695069726 842.3817009681945 2 422.1722106933594 MULTI HCD FTMS 0 0 0 17783 23966.544921875 0.31388201881951083 -1 0.025604248046875 9 Unmodified _LYTGGDAF_ REV__ENSG00000171160|ENST00000307450|MORN4;REV__nc|ENSG00000171160|Q8NDC4-2|MORN4 6.354104778181461 0.5325651638111438 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.602 0 0 677.3034061457321 0 677.3034061457321 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.602 + + 4 + NaN NaN 135959 NaN 14099 3691 17783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17794 75.059 NaN 4146300 35 0 907430 0.327 + -1 IGLLRCMLE 9 111 532.2864497733162 1062.5583466134324 2 532.2719116210938 MULTI HCD FTMS 0 0 0 17793 130000.0234375 0.28739937396689963 4 -0.09583282470703125 1 Oxidation (M) _IGLLRCM(Oxidation (M))LE_ REV__ENSG00000182156|ENST00000328313|ENPP7 36.04419817259434 0.08350412372117409 2 [YG]AHW{I|L}G{I|L} 8 -1 45.126 0 0 4.2469 0 0 0 162.08620416073373 162.08620416073373 -0.46938492162595935 0 -0.46938492162595935 0 0 0 1.6989700043360187 0 0 [YG]AHW{I|L}G{I|L} 4.2469 - 3528 NaN NaN 729076.4 NaN 14100 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17795 75.064 NaN 1792700 35 0 252590 0.261 + 13109 KYLESFLAF 9 110 559.3001756147744 1116.5857982963487 2 559.3001708984375 MULTI HCD FTMS 0 0 0 17793 968844.8125 0.481102139968773 -1 0.03278350830078125 2 Unmodified _KYLESFLAF_ ENSG00000124571|ENST00000265351|XPO5 61.60191391372663 0.015340508911304802 2 [YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F} 9 0 + 70.733 0 0 6.3348 6.3348 86.877 0 0 0 4.137342758552691 21.334916612559724 4.137342758552691 5.897554856604174 0 2.943672679568534 0 0.3494850021680094 0 + + [YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[Y{I|L}]KES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[Y{I|L}]A[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[YE]K{I|L}A{M(Oxidation (M))|F};[YK]{I|L}[{I|L}A][YE]A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]K{I|L}A{M(Oxidation (M))|F};[Y{I|L}]A[YE]K{I|L}A{M(Oxidation (M))|F};[KA]{M(Oxidation (M))|F}HH{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F} 6.3348;5.8066;4.7844;4.6016;4.6016;3.2084;3.1106;3.0256;3.0256;2.9668 +;-;-;-;-;-;-;-;-;- + 3806 NaN NaN 366836 NaN 14101 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17796 75.067 NaN 428160 35 0 54945 0.261 + 4391 EYAHLFEVF 9 68 577.7797125730827 1153.5448722129654 2 577.7801513671875 MULTI HCD FTMS 0 0 0 17793 330649.90625 0.5167149581326371 4 -0.09583282470703125 3 Unmodified _EYAHLFEVF_ ENSG00000130803|ENST00000247956|ZNF317;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317 71.13359017698441 0.008721403657255008 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 3 + 55.869 0 0 4.8432 4.8432 87.947 0 0 0 1.896512253176823 34.09765299137284 1.896512253176823 11.505149978319906 0 1.7302046884880937 0 1.3494850021680094 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[HT]E{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YE]A[H{I|L}]{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 4.8432;3.8458;3.6932 -;-;+ + 270 NaN NaN 156418.6 NaN 14102 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17797 75.07 NaN 662260 35 0 64521 0.261 + 35973 YYVRAWVVF 9 90 601.8238621292932 1201.6331713253862 2 602.3281860351562 MULTI HCD FTMS 0 0 0 17793 118964.4921875 0.11914296089648788 32 -0.7302932739257812 4 Unmodified _YYVRAWVVF_ DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24 13.50788311687929 0.24365122550260465 2 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L}{[TV]|[{I|L}S]}T 9 7 23.451 0 0 1.9516 0 0 0 161.07730822457998 161.07730822457998 0.7203112844198678 0 0 0 0 0 1.6989700043360187 0.6549471895720985 0 [Y{I|L}]{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L}{[TV]|[{I|L}S]}T 1.9516 - 700 NaN NaN 192721.7 NaN 14103 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17798 75.074 NaN 402700 35 0 25394 0.261 + 18109 MPAFIFEHI 9 77 552.7809728664606 1103.5473927997211 2 552.7808837890625 MULTI HCD FTMS 0 0 0 17793 165416.421875 0.42403366842990703 4 -0.09583282470703125 5 Unmodified _MPAFIFEHI_ ENSG00000137575|ENST00000260130|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;nc|ENSG00000137575|O00560-3|SDCBP 64.23631603340823 0.01165516075559909 2 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 64.587 0 0 5.8527 5.8527 84.717 0 0 0 20.26007408635124 2.271212547196626 2.271212547196626 2.271212547196626 0 1.3494850021680094 1.2218487496163564 0 0 MPA{M(Oxidation (M))|F}{[YC]|[HE]}{I|L}{I|L}{M(Oxidation (M))|F};MPA{M(Oxidation (M))|F}{[YC]|[HE]}{M(Oxidation (M))|F}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}EH{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[HG]|PP}[QT]{I|L}H{I|L};{NN|[MP]|[D{I|L}]|[EV]}[HQ][QT]{I|L}H{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[WE]{I|L}H{I|L};[Y{I|L}]M[WE]{I|L}H{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[WE]{I|L}H{I|L} 5.8527;5.6469;3.2619;1.982;0.93697;0.74235;0.64345;0.64345 -;-;+;-;-;-;-;- + 408 + NaN NaN 159371.9 NaN 14104 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17799 75.077 NaN 591200 35 0 111000 0.261 + 21791 QAIGIEVEL 9 58 486.2740645209298 970.5335761086596 2 486.2737121582031 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QAIGIEVEL_ ENSG00000155561|ENST00000285968|NUP205 78.7280429016045 0.006263961847259105 2 [Q{I|L}]AG{I|L}EVE{I|L} 9 2 + 56.283 0 0 5.7992 5.7992 84.845 0 0 0 7.773783233581028 16.478174818886373 7.773783233581028 2.9440873258899813 0 1.4177353201839438 0 0.805462187404089 0.8979400086720376 [Q{I|L}]AG{I|L}EVE{I|L};[Q{I|L}]Q{I|L}EVE{I|L};[Q{I|L}]GA{I|L}EVE{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}QQE{I|L};{[QN]|[E{I|L}]|[KN]}V{I|L}QQE{I|L};[VP][Q{I|L}]{[CA]|SS}VE{I|L};[Q{I|L}][VP]{[CA]|SS}VE{I|L};[Q{I|L}]AGR[WQ]{I|L};[Q{I|L}]QR[WQ]{I|L};[Q{I|L}]GAR[WQ]{I|L} 5.7992;5.4959;5.4432;4.9982;4.5674;3.7758;3.6195;2.1984;1.9021;1.8423 -;-;-;-;-;-;-;-;-;- 324 NaN NaN 194117 NaN 14105 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17800 75.08 NaN 72971 35 0 4445.5 0.261 + 23110 RETRAAPL 8 50 457.2643155749803 912.5140782167606 2 457.2644348144531 MULTI HCD FTMS 0 0 0 17793 24441.326171875 0.16789143922047028 19 -0.5030364990234375 7 Unmodified _RETRAAPL_ ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF;ENST00000606557.1_1_20:17948856-17948946:-|nuORF 0.7936320650641473 0.540814922690045 2 W 1 8 15.485 0 0 1.6969 0 0 708.4247360310169 0 708.4247360310169 0 4.057875029352971 0 0 0 0 0 0 0 W 1.6969 - 22 + NaN NaN 105931.2 NaN 14106 3692 17793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17802 75.085 NaN 1160800 35 0 203290 0.327 + 22920 QYSNAFDVF 9 73 545.7457228491174 1089.4768927650348 2 545.7457885742188 MULTI HCD FTMS 0 0 0 17801 781534.0625 1 0 0 1 Unmodified _QYSNAFDVF_ ENSG00000141232|ENST00000499247|TOB1 78.7280429016045 0.006263961847259105 2 [DV]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}DV 8 5 56.08 0 0 5.1474 0 0 0 162.05649960435167 162.05649960435167 39.090475125574855 0 0 0 0 1.8494850021680094 1.5228787452803376 0.7742275032520141 0 [DV]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}DV 5.1474 - 292 NaN NaN 280829 NaN 14107 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17803 75.09 NaN 1859500 35 0 93206 0.261 -1 LMHVCSAFL 9 139 539.262559205563 1076.5105654779259 2 539.269287109375 MULTI HCD FTMS 0 0 0 17801 304401.96875 1 0 0 2 Carbamidomethyl (C) _LMHVC(Carbamidomethyl (C))SAFL_ nc|ENSG00000138795|Q9UJU2-2|LEF1;nc|ENSG00000138795|Q9UJU2-4|LEF1 30.224811164608877 0.11021837014094292 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QTHMG{M(Oxidation (M))|F}{I|L} 9 -1 + 49.42 0 0 4.5908 4.5908 82.851 0 0 0 12.921656121837643 2.6230450566754513 2.6230450566754513 2.6230450566754513 0 1.528659694992122 1.5228787452803376 0.48020468848809383 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QTHMG{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QTHMG{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[HK]C{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W[HK]C{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}THMG{I|L}{M(Oxidation (M))|F};[TP]Q{M(Oxidation (M))|F}HMG{M(Oxidation (M))|F}{I|L};[TP]Q{M(Oxidation (M))|F}HMG{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}W[PA]{[CP]|[EA]}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[HG]|PP}[C(Carbamidomethyl (C))S]{I|L}{I|L};[HA][HQ]HMG{I|L}{M(Oxidation (M))|F} 4.5908;4.3471;3.6513;3.4077;3.3904;3.2039;2.9602;2.9569;2.8999;2.7933 -;-;-;-;-;-;-;-;-;- 2576 NaN NaN 377017.8 NaN 14108 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17804 75.093 NaN 521520 35 0 51362 0.261 + 33712 YLAPVNYGLL 10 92 561.8135148459119 1121.6124767586236 2 561.8029174804688 MULTI HCD FTMS 0 0 0 17801 39932.625 0.16313160014423206 5 -0.12194061279296875 3 Unmodified _YLAPVNYGLL_ REV__ENSG00000111676|ENST00000396684|ATN1 21.74664581756881 0.3077012291670537 2 PY{I|L}{M(Oxidation (M))|F}HVVT 8 -1 78.745 0 0 7.0207 0 0 0 162.0557039850219 162.0557039850219 21.13265202332633 0 0 0 0 0.5 1.6989700043360187 1.5431576817365436 0 PY{I|L}{M(Oxidation (M))|F}HVVT 7.0207 - 740 + NaN NaN 179712.1 NaN 14109 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17805 75.096 NaN 1609800 35 0 327080 0.261 + 8357 GYISRSVAGSF 11 105 572.2959008292546 NaN 0 572.3076782226562 PEAK HCD FTMS 0 0 0 17801 44455.3046875 1 0 0 4 Unmodified _GYISRSVAGSF_ ENSG00000163527|ENST00000295770|STT3B;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000453168.5_1_3:31574490-31661308:+|nuORF 27.628801355627647 0.19725092517468332 2 YP{M(Oxidation (M))|F}A{I|L}S{I|L} 7 8 41.864 0 0 3.664 0 0 131.073342505325 217.06128870181877 348.1346312071438 0 0 0 0 0 0.6549471895720984 0 2.7302046884880937 0 YP{M(Oxidation (M))|F}A{I|L}S{I|L} 3.664 - 1119 + NaN NaN 335042.9 NaN 14110 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17806 75.1 NaN 285690 35 0 37718 0.261 -1 MPDIDFNL 8 57 490.7232540056682 979.4319550781364 2 490.7234191894531 MULTI HCD FTMS 0 0 0 17801 341083.03125 0.9737985098942465 -4 0.123321533203125 5 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 28.486842064014134 0.3788298654084067 2 {M(Oxidation (M))|F}N{I|L} 3 -1 37.307 0 0 3.8091 0 0 587.2254572838234 0 587.2254572838234 0 17.84318117920506 0 0 0 0.805462187404089 0 0 0.3054621874040891 {M(Oxidation (M))|F}N{I|L} 3.8091 + + 87 NaN NaN 131548.9 NaN 14111 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17807 75.103 NaN 607330 35 0 64251 0.261 + 9093 HPFFNDFTF 9 83 586.2640275861357 1170.5135022390714 2 586.7649536132812 MULTI HCD FTMS 0 0 0 17801 152309.65625 0.414057400777073 5 -0.12194061279296875 6 Unmodified _HPFFNDFTF_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14 18.1463463914782 0.20357593197100715 2 YC[MD]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7 5 31.841 0 0 2.7202 0 0 245.18196303535314 0 245.18196303535314 0 21.38312609025668 0 0 0 0.9247425010840047 0 0.3252574989159953 0 YC[MD]{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.7202 - 187 NaN NaN 183758.9 NaN 14112 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17808 75.106 NaN 275650 35 0 49381 0.261 -1 VYAEIMAVL 9 47 512.7728193436508 1023.5310857541016 2 512.7726440429688 MULTI HCD FTMS 0 0 0 17801 170926.640625 0.6923642310268756 -3 0.0843658447265625 7 Oxidation (M) _VYAEIM(Oxidation (M))AVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 34.10243960390752 0.09241788333544565 2 {I|L}{M(Oxidation (M))|F}AV{I|L} 5 -1 49.068 0 0 4.794 0 0 462.2099781720719 0 462.2099781720719 0 24.911356165197844 0 0 0 1.3494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F}AV{I|L} 4.794 + + 201 NaN NaN 131337.2 NaN 14113 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17809 75.11 NaN 160770 35 0 7954.6 0.261 + 6368 FPFYYEIKM 9 62 619.301685253378 1236.5888175735558 2 619.3023071289062 MULTI HCD FTMS 0 0 0 17801 200172.984375 0.4571321207629964 7 -0.18414306640625 8 Unmodified _FPFYYEIKM_ ENSG00000168476|ENST00000306306|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4 40.23920728925047 0.06424668180817725 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}KM 9 0 + 47.642 0 0 3.8527 3.8527 81.69 0 0 0 1.9897000433601875 1.9897000433601875 1.9897000433601875 1.9897000433601875 0 1.6549471895720984 0 0 0 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}Y[YE]{I|L}KM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}YNKM;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{I|L}P]{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}PE;YY{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}KM 3.8527;3.6918;2.9002;2.0953 +;-;-;- + 87 + NaN NaN 117752.2 NaN 14114 3693 17801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17811 75.115 NaN 25791000 35 0 3981300 0.327 + 1407 AYQHLFYLL 9 89 584.313453362459 1166.6123537917179 2 584.314208984375 MULTI HCD FTMS 0 0 0 17810 21234750 0.5585037971340935 1 -0.02443695068359375 1 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 123.09622228370866 0.0010236603636890153 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 98.426 0 0 8.4369 8.4369 90.908 0 0 0 18.01493210686104 16.478174818886373 16.478174818886373 6.817496819840656 0 2.8494850021680094 1.5228787452803376 0 0.8539171939081173 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y;[YQ]AH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{I|L}{M(Oxidation (M))|F}Y{I|L} 8.4369;7.8525;7.6657;7.2572;6.9791;6.9538;6.8927;6.7856;6.7211;6.6728 +;-;-;-;-;-;-;-;-;- + 3672 NaN NaN 538050.8 NaN 14115 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17812 75.119 NaN 11866000 35 0 5413500 0.166 + 17292 LYPQFMFHL 9 83 606.2992549835044 1210.5839570338087 2 606.2998657226562 MULTI HCD FTMS 0 0 0 17810 4726942 0.30157049531280844 6 -0.15477752685546875 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 87.005 0 0 7.187 7.187 92.918 0 0 0 74.30191582041068 6.7074145675533 6.7074145675533 15.757659435244733 0 2.1861818737241734 2 0 0.6549471895720985 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PGA{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[C(Carbamidomethyl (C))R]MSTA{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}[HM]Y{I|L};[Y{I|L}]PGA{M(Oxidation (M))|F}[HM]Y{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L}Y{I|L} 7.187;5.8854;4.7309;4.5245;3.6203;3.5202;3.0614;2.4651;1.8034;1.6631 +;-;+;-;-;-;-;-;-;- + 841 + NaN NaN 756634.9 NaN 14116 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17813 75.121 NaN 1290700 35 0 69629 0.261 + 11603 IYTPIFNEY 9 128 580.2878254472174 1158.5610979612347 2 580.2914428710938 MULTI HCD FTMS 0 0 0 17810 238145.359375 0.3612394012319391 -3 0.08812713623046875 3 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 103.35351024395868 0.004027461563756449 2 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY 9 0 + 61.339 0 0 5.2944 5.2944 84.32 0 0 0 3.6573582927613018 8.939611210946659 3.6573582927613018 3.6573582927613018 0 1.9049471895720984 1.0457574905606752 0.9489700043360187 0 + + [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}NEY;[{I|L}T]Y[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NYE;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}GGEY;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}NYE;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}GGEY;[YT]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[{I|L}T]Y[{I|L}P]{M(Oxidation (M))|F}NYE 5.2944;4.9787;4.6867;4.5228;4.4996;4.277;4.2071;4.1839;3.9613;3.9151 +;-;-;-;-;-;-;-;-;- + 3252 NaN NaN 309292.4 NaN 14117 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17814 75.124 NaN 401730 35 0 30638 0.261 + 1401 AYQHFPDKAL 10 72 595.3043618347054 1188.5941707362108 2 595.3043823242188 MULTI HCD FTMS 0 0 0 17810 56944.27734375 0.1858951807564462 -2 0.0553436279296875 4 Unmodified _AYQHFPDKAL_ ENST00000503952.5_1_4:128606686-128637588:+|nuORF 41.95555342248728 0.12843670176738353 2 AYQH{I|L}{M(Oxidation (M))|F}Y 7 6 86.705 0 0 7.2948 0 0 0 263.1373690240844 263.1373690240844 62.99401846470451 0 0 0 0 2.024227503252014 2 0 0.28872548999643577 AYQH{I|L}{M(Oxidation (M))|F}Y 7.2948 - 247 + NaN NaN 148316.8 NaN 14118 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17815 75.128 NaN 252320 35 0 26766 0.264 -1 LYTCGDQHGGL 11 55 407.5152558407353 NaN 0 407.51519775390625 PEAK HCD FTMS 0 0 0 17810 55045.390625 0.1784699098102332 -2 0.0553436279296875 5 Carbamidomethyl (C) _LYTC(Carbamidomethyl (C))GDQHGGL_ ENST00000482273.1_1_21:38269069-38269306:-|nuORF 3.072263186857199 0.33340501757296537 2 {I|L} 1 -1 2.4743 0 0 0.30433 0 0 424.82950962893307 272.07883630924067 696.9083459381737 0 0 0 0 0 0 0 0 0 {I|L} 0.30433 + + 2 + NaN NaN 125036.4 NaN 14119 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17816 75.131 NaN 134180 35 0 14646 0.261 + 15282 LPAEVLDSL 9 50 478.7686569612561 955.5227609893122 2 479.2708435058594 MULTI HCD FTMS 0 0 0 17810 46628.16796875 0.25731036419531567 1 -0.02443695068359375 6 Unmodified _LPAEVLDSL_ ENSG00000120708|ENST00000442011|TGFBI;TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant 52.268347100219714 0.028397529699942435 2 V{I|L}DS{I|L} 5 4 50.433 0 0 5.2781 0 0 410.21586806465 0 410.21586806465 0 39.27440017027358 0 0 0 1.1237125054200234 0 0.4247425010840047 0 + V{I|L}DS{I|L} 5.2781 + + 51 NaN NaN 114392.6 NaN 14120 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17817 75.134 NaN 187260 35 0 8681.1 0.261 + 27996 TFLESTYLY 9 71 568.7795162983248 1135.5444796634495 2 568.780029296875 MULTI HCD FTMS 0 0 0 17810 25766.775390625 0.16107926543320036 1 -0.02443695068359375 7 Unmodified _TFLESTYLY_ REV__ENSG00000129682|ENST00000315930|FGF13;REV__FGF13|p.P139T|1|0.61|ENSG00000129682|chrX:138635643-138635643|G/T|missense_variant;REV__nc|ENSG00000129682|Q92913-2|FGF13;REV__nc|ENSG00000129682|Q92913-3|FGF13;REV__nc|ENSG00000129682|Q92913-4|FGF13;REV__nc|ENSG00000129682|Q92913-5|FGF13 18.13498045792455 0.20367413111508956 2 YY{I|L} 3 -1 33.188 0 0 2.9226 0 0 678.3236394759142 0 678.3236394759142 0 17.614393726401687 0 0 0 1 0 0 0 YY{I|L} 2.9226 - 87 NaN NaN 112911.9 NaN 14121 3694 17810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17819 75.139 NaN 1028900 35 0 64043 0.327 + 11604 IYTPIFNEY 9 118 580.2878254472174 1158.5610979612347 2 580.2891235351562 MULTI HCD FTMS 0 0 0 17818 391216.96875 0.593431607963804 -2 0.053802490234375 1 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 96.36657018975838 0.004359138328518304 2 [Y{I|L}]TP{I|L}{M(Oxidation (M))|F}NEY 9 0 + 71.797 0 0 6.1971 6.1971 90.257 0 0 0 16.980523937757752 24.32352995507255 16.980523937757752 11.822581265925436 0 2.159379381312206 1.2218487496163564 0.9049471895720984 0.2614393726401688 + + [Y{I|L}]TP{I|L}{M(Oxidation (M))|F}NEY;[Y{I|L}]TP{I|L}{M(Oxidation (M))|F}GGEY;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[YT]{I|L}P{I|L}{M(Oxidation (M))|F}NEY;[Y{I|L}]TP{I|L}{M(Oxidation (M))|F}[YE]N;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}[YG]TTN;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EPY{M(Oxidation (M))|F};[Y{I|L}]T[RV]{[ES]|[DT]|[{I|L}C]}EY;{[DS]|[MA]|[CV]|TT}{I|L}[SG]K{M(Oxidation (M))|F}NEY;[Y{I|L}]TP{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Y 6.1971;5.1767;4.9955;4.6828;4.2436;4.1049;3.861;3.8465;3.8121;3.7322 +;-;-;-;-;-;-;-;-;- + 1948 NaN NaN 250453 NaN 14122 3695 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17820 75.143 NaN 324910 35 0 24654 0.263 -1 0 73 435.2510723915091 868.4875918498183 2 435.25115966796875 MULTI HCD FTMS 0 0 0 17818 246392.65625 0.6180279407936544 41 -0.8074798583984375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.6096 0 0 703.4087477109496 0 703.4087477109496 0 6.747425010840047 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6096 - 50 + NaN NaN 139198.4 NaN 14123 3695 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17821 75.147 NaN 444600 35 0 38009 0.261 + 19839 NYAWVYYHL 9 95 614.7927243454062 1227.5708957576123 2 614.792724609375 MULTI HCD FTMS 0 0 0 17818 176726.8125 0.4821033580739251 -15 0.41263580322265625 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 0.00436583732602279 2 [YN]AWVYYH{I|L} 9 0 + 93.904 0 0 7.6496 7.6496 95.826 0 0 0 18.125245087498925 16.478174818886373 16.478174818886373 43.12524508749892 0 2.6989700043360187 1.6989700043360187 0 1.3505762035186217 + + [YN]AWVYYH{I|L};[YQ]GWVYYH{I|L};[YN][TP]{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}H{I|L};[YN][TP]{[TV]|[{I|L}S]}HH{M(Oxidation (M))|F}{I|L};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}YH{I|L};[HN]PWV{[DS]|[MA]|[CV]|TT}VA{[CT]|[{M(Oxidation (M))|F}G]} 7.6496;4.1365;2.6982;2.331;1.6355;1.2408 +;-;-;-;-;- + 668 NaN NaN 157175 NaN 14124 3695 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17822 75.15 NaN 177920 35 0 9526.6 0.261 + 6528 FPISEETIKLL 11 65 645.3711934171899 1288.7278339011798 2 645.3712768554688 MULTI HCD FTMS 0 0 0 17818 24090.169921875 0.13140610469509126 2 -0.03873443603515625 4 Unmodified _FPISEETIKLL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENSG00000165732|ENST00000354185|DDX21;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;nc|ENSG00000165732|Q9NR30-2|DDX21 27.223235318498237 0.2198854698817499 2 K{I|L}{I|L} 3 8 31.198 0 0 2.4208 0 0 916.4548684703592 0 916.4548684703592 0 16.49288766643714 0 0 0 0.5 0 0 0 + K{I|L}{I|L} 2.4208 + + 22 NaN NaN 119984.6 NaN 14125 3695 17818 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17824 75.155 NaN 2735800 35 0 411120 0.326 + 12846 KYFEVPSVLL 10 115 597.8422319297273 1193.6699109262545 2 597.8424072265625 MULTI HCD FTMS 0 0 0 17823 1609486.875 0.789850800653675 3 -0.08487701416015625 1 Unmodified _KYFEVPSVLL_ ENSG00000131966|ENST00000254286|ACTR10 103.82355648334675 5.879419037132958E-05 2 [{M(Oxidation (M))|F}E]YKVPSV{I|L}{I|L} 10 4 + 80.707 0 0 6.7613 6.7613 85.987 0 0 0 1.7609125905568135 16.53212513775344 1.7609125905568135 1.7609125905568135 0 2.06295299324845 0 1.5743923658886185 0 [{M(Oxidation (M))|F}E]YKVPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKVPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YVKPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EVKPSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]D{I|L}KPSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKPVSV{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKPVSV{I|L}{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[Q{I|L}]VSV{I|L}{I|L};[{M(Oxidation (M))|F}E]YKP[TA]{I|L}{I|L}{I|L};[Y{M(Oxidation (M))|F}]EKP[TA]{I|L}{I|L}{I|L} 6.7613;6.6138;5.9235;5.776;5.481;5.4486;5.3011;3.5444;3.2182;3.0706 -;-;-;-;-;-;-;-;-;- 4898 NaN NaN 508778.2 NaN 14126 3696 17823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17825 75.159 NaN 1299000 35 0 285340 0.261 + 16111 LPTEEEWEF 9 83 590.263313674265 1178.5120744153298 2 590.2635498046875 MULTI HCD FTMS 0 0 0 17823 1006575.4375 0.7979043896414565 3 -0.08487701416015625 2 Unmodified _LPTEEEWEF_ ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-2|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 68.08070601005525 0.009709267492204555 2 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F} 8 6 + 62.925 0 0 5.3393 5.3393 89.588 0 0 0 7.302295081522715 37.86297847284061 7.302295081522715 14.983105537896009 0 1.274227503252014 1.6989700043360187 0.3807196863200844 0 YY{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[Y{I|L}]Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}WE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]W{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}[QP][PA]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]W{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WE]{M(Oxidation (M))|F}{M(Oxidation (M))|F}EK{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.3393;4.068;3.3969;3.34;2.9613;2.7567;2.6999 -;-;-;-;-;-;- 522 NaN NaN 293624.9 NaN 14127 3696 17823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17826 75.163 NaN 1195700 35 0 58989 0.261 + 17357 LYQDKFPFF 9 95 602.8052567154477 1203.5959604976954 2 602.8045043945312 MULTI HCD FTMS 0 0 0 17823 414902.53125 0.44122763342677723 -4 0.09583282470703125 3 Unmodified _LYQDKFPFF_ ENSG00000144028|ENST00000323853|SNRNP200 96.36657018975838 0.004359138328518304 2 {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 84.93 0 0 7.0564 7.0564 90.369 0 0 0 63.25290225448087 6.879617791072832 6.879617791072832 9.208187539523749 0 2.2658715643802765 2 0.3494850021680094 0.6203715150305281 + + {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG]DK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YQ[YG]{I|L}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG][YG]{I|L}GP{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YQ[YG]{I|L}[YV]W;[Y{I|L}]Q[QP]{M(Oxidation (M))|F}YV{M(Oxidation (M))|F};[Y{I|L}]Q{[WT]|[RM]}A{I|L}Y{M(Oxidation (M))|F};[Y{I|L}]Q[QP][YV]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{[WT]|[RM]}{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG][QP]{M(Oxidation (M))|F}YV{M(Oxidation (M))|F} 7.0564;6.2913;5.405;4.3273;3.7151;3.0124;2.8279;2.599;2.5565;2.2474 +;-;-;-;-;-;-;-;-;- + 2168 + NaN NaN 267077.1 NaN 14128 3696 17823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17827 75.166 NaN 471130 35 0 51122 0.261 + 12852 KYFGGVLEYF 10 82 611.8103488552917 1221.6061447773834 2 611.810546875 MULTI HCD FTMS 0 0 0 17823 103988.046875 0.2360791472533454 3 -0.08487701416015625 4 Unmodified _KYFGGVLEYF_ ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF 38.61474834105838 0.1574278268413918 2 [YK]{M(Oxidation (M))|F}NV{I|L}EY{M(Oxidation (M))|F} 9 2 + 52.947 0 0 4.3342 4.3342 85.993 0 0 0 3.2568864632742844 38.994653424974715 3.2568864632742844 9.208187539523749 0 1.9916440611282624 0 0 0 [YK]{M(Oxidation (M))|F}NV{I|L}EY{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}GGV{I|L}EY{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}NV[YE]{I|L}{M(Oxidation (M))|F};[YK]{M(Oxidation (M))|F}GGV[YE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}V[YN]K{M(Oxidation (M))|F};[Y{I|L}]E{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 4.3342;3.5804;1.6413;0.8875;0.80713;0.0072636 -;+;-;-;-;- + 354 NaN NaN 165676.7 NaN 14129 3696 17823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17828 75.17 NaN 433720 35 0 38800 0.261 + 8796 HILQTVVPDE 10 79 575.8099478884425 NaN 0 575.7929077148438 PEAK HCD FTMS 0 0 0 17823 18764.50390625 0.3644934960125641 -1 0.01605224609375 5 Unmodified _HILQTVVPDE_ ENSG00000157426|ENST00000205214|AASDH;ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-2|AASDH;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH 12.240655878213236 0.32970798410958835 2 {M(Oxidation (M))|F}PT{M(Oxidation (M))|F}YS 6 9 28.492 0 0 2.4784 0 0 131.12921376417984 273.1236666315063 404.25288039568613 0 0 0 0 0 0 0 0.7302046884880937 0 {M(Oxidation (M))|F}PT{M(Oxidation (M))|F}YS 2.4784 - 713 + NaN NaN 161245.7 NaN 14130 3696 17823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17829 75.173 NaN 235260 35 0 23269 0.261 + 7749 FYMFDILF 8 69 548.2660415258408 1094.5175301184815 2 548.265380859375 MULTI HCD FTMS 0 0 0 17823 127385.8828125 0.48804622370278467 3 -0.08487701416015625 6 Unmodified _FYMFDILF_ REV__ENSG00000114698|ENST00000354952|PLSCR4;REV__nc|ENSG00000114698|Q9NRQ2-2|PLSCR4 20.871210003555333 0.44023077629866025 2 {I|L}EV{[WT]|[RM]}G{I|L}{M(Oxidation (M))|F} 8 -1 54.686 0 0 4.9963 0 0 131.0003922084805 0 131.0003922084805 0 36.102065882283796 0 0 0 1.4247425010840047 0 0.3807196863200844 0 {I|L}EV{[WT]|[RM]}G{I|L}{M(Oxidation (M))|F} 4.9963 - 217 + NaN NaN 131291 NaN 14131 3696 17823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17831 75.178 NaN 1366400 35 0 286270 0.327 + 4443 EYGPIHILW 9 107 564.2978303293603 1126.5811077255205 2 564.2979125976562 MULTI HCD FTMS 0 0 0 17830 868838 0.5924720202528193 4 -0.1234283447265625 1 Unmodified _EYGPIHILW_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 112.55848718100151 0.002524723184987143 2 [YE]GP{I|L}H{I|L}{I|L}W 9 0 + 49.891 0 0 4.4285 4.4285 88.45 0 0 0 30.806596034575776 10.777432671374996 10.777432671374996 15.89755485660416 0 1.3684151806525389 1.3010299956639813 0 0 + + [YE]GP{I|L}H{I|L}{I|L}W;{[YD]|[{M(Oxidation (M))|F}M]}AP{I|L}H{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}TK[TA]WG{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}TK[TA]{[CT]|[{M(Oxidation (M))|F}G]}W;[Y{I|L}]AAK[TA]WG{M(Oxidation (M))|F};[Y{I|L}][YK][HS]{I|L}G{M(Oxidation (M))|F};[Y{I|L}][YK]{I|L}[WQ]N;[Y{I|L}][YK]{I|L}[HS]G{M(Oxidation (M))|F};[YG]VVK[TA]WG{M(Oxidation (M))|F} 4.4285;3.0174;2.9613;2.651;1.5834;1.1935;0.53522;0.44332;0.43181 +;-;-;-;-;-;-;-;- + 825 + NaN NaN 300473 NaN 14132 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17832 75.182 NaN 524650 35 0 193530 0.261 + 14932 LLEKPRFF 8 51 525.3108276528798 1048.6071023725594 2 525.31103515625 MULTI HCD FTMS 0 0 0 17830 337832.3125 0.6459594914535489 1 -0.0294036865234375 2 Unmodified _LLEKPRFF_ ENST00000231572.7_1_5:167943936-167944917:+|nuORF 26.88365393820708 0.39599352634412927 2 {I|L}{I|L}[{M(Oxidation (M))|F}E]NT 6 5 28.645 0 0 2.7317 0 0 0 328.2361666638282 328.2361666638282 9.041068762088997 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}{I|L}[{M(Oxidation (M))|F}E]NT 2.7317 - 27 NaN NaN 166442.9 NaN 14133 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17833 75.186 NaN 1086200 35 0 72503 0.261 + 11605 IYTPIFNEY 9 115 580.2878254472174 1158.5610979612347 2 580.2874145507812 MULTI HCD FTMS 0 0 0 17830 659245.25 1 0 0 3 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 99.75527289724121 0.004270341300239591 2 [Y{I|L}]TP{I|L}{M(Oxidation (M))|F}NEY 9 0 + 76.583 0 0 6.6102 6.6102 87.5 0 0 0 6.138794473725952 11.849005020901558 6.138794473725952 6.138794473725952 0 2.024227503252014 1.0969100130080565 1 0 + + [Y{I|L}]TP{I|L}{M(Oxidation (M))|F}NEY;[YT]{I|L}P{I|L}{M(Oxidation (M))|F}NEY;[Y{I|L}]TP{I|L}{M(Oxidation (M))|F}GGEY;[Y{I|L}]TP{I|L}{M(Oxidation (M))|F}NYE;[YT]{I|L}P{I|L}{M(Oxidation (M))|F}GGEY;[YT]{I|L}P{I|L}{M(Oxidation (M))|F}NYE;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}EP{M(Oxidation (M))|F}Y;[Y{I|L}]TP{I|L}{M(Oxidation (M))|F}GGYE;[Y{I|L}]TP{I|L}{M(Oxidation (M))|F}[YE]N;[{I|L}T]YP{I|L}{M(Oxidation (M))|F}NEY 6.6102;6.0803;5.8154;5.5874;5.2855;5.0576;4.9256;4.7926;4.7622;4.6031 +;-;-;-;-;-;-;-;-;- + 2717 NaN NaN 256707.8 NaN 14134 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17834 75.189 NaN 408030 35 0 74861 0.261 -1 YYLSLWESC 9 68 610.7688927876518 1219.5232326421035 2 610.769287109375 MULTI HCD FTMS 0 0 0 17830 195200.59375 0.6309111377940317 4 -0.1234283447265625 4 Carbamidomethyl (C) _YYLSLWESC(Carbamidomethyl (C))_ ENSG00000147027|ENST00000275954|TMEM47 5.230669730166228 0.3113646817964458 2 YY{I|L} 3 -1 19.41 0 0 1.5916 0 0 0 777.2890767185285 777.2890767185285 4.717262228329563 0 0 0 0 0 1.5228787452803376 0 0 YY{I|L} 1.5916 + + 38 NaN NaN 148013.9 NaN 14135 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17835 75.192 NaN 255020 35 0 46895 0.262 + 849 AWIESSVLV 9 57 502.2766455538297 1002.5387381744595 2 502.2768859863281 MULTI HCD FTMS 0 0 0 17830 212949.65625 0.8099993188976888 1 -0.0294036865234375 5 Unmodified _AWIESSVLV_ ENST00000368576.7_1_6:116979985-116981934:-|nuORF 21.74664581756881 0.17247014374749275 2 SVV{I|L} 4 6 46.186 0 0 4.6069 0 0 586.2749488066424 0 586.2749488066424 0 39.61880661731264 0 0 0 1.4247425010840047 0 0 0 SVV{I|L} 4.6069 - 45 NaN NaN 126371.3 NaN 14136 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17836 75.196 NaN 2337700 35 0 170950 0.261 + 2110 DFFAYIIF 8 110 518.2630391935928 1034.5115254539855 2 518.7650146484375 MULTI HCD FTMS 0 0 0 17830 220767.171875 0.973574953342252 1 -0.0294036865234375 6 Unmodified _DFFAYIIF_ ENST00000486047.5_1_9:4605401-4627755:-|nuORF 26.34127834903884 0.3999841173197873 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 5 34.442 0 0 3.3293 0 0 643.263898616145 0 643.263898616145 0 9.339716662953816 0 0 0 1.0629529932484498 0 0 0 + {I|L}{I|L}{M(Oxidation (M))|F} 3.3293 + + 7153 NaN NaN 449683.9 NaN 14137 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17837 75.199 NaN 477360 35 0 45427 0.261 + 3397 EEWLPRELW 9 70 629.3167012584606 1256.6188495837212 2 629.317138671875 MULTI HCD FTMS 0 0 0 17830 113236.71875 0.8435683868726854 1 -0.0294036865234375 7 Unmodified _EEWLPRELW_ ENSG00000065057|ENST00000651570|NTHL1;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;nc|ENSG00000065057|P78549|NTHL1 39.94969957227396 0.06557568441294001 2 [Y{I|L}]NV[WR]{M(Oxidation (M))|F}{I|L} 8 7 17.802 0 0 1.4166 0 0 0 161.99436295154115 161.99436295154115 2.3899475983465326 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]NV[WR]{M(Oxidation (M))|F}{I|L} 1.4166 - 100 NaN NaN 169276.2 NaN 14138 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17838 75.202 NaN 188470 35 0 26272 0.263 + 25947 SPDDLELEL 9 58 515.7502866876455 1029.4860204420909 2 515.7509765625 MULTI HCD FTMS 0 0 0 17830 80436.5390625 0.9410349899927009 1 -0.0294036865234375 8 Unmodified _SPDDLELEL_ ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant 19.256988751693697 0.19398022840297344 2 E{I|L}E{I|L} 4 5 38.047 0 0 3.6958 0 0 527.2231312482437 0 527.2231312482437 0 22.562893943202624 0 0 0 0.8494850021680094 0 0 0 + E{I|L}E{I|L} 3.6958 + + 33 NaN NaN 127985.8 NaN 14139 3697 17830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17840 75.207 NaN 1409400 35 0 312760 0.327 -1 IGLLFMPCL 9 92 532.2864497733162 1062.5583466134324 2 532.2718505859375 MULTI HCD FTMS 0 0 0 17839 38244.61328125 0.08454981486923953 10 -0.29035186767578125 1 Carbamidomethyl (C) _IGLLFMPC(Carbamidomethyl (C))L_ ENST00000528435.5_1_11:118175667-118182938:+|nuORF 14.581692164780916 0.23437375358055648 2 [YG]AHW{I|L}G{I|L} 8 -1 42.573 0 0 4.0067 0 0 0 162.08640272360017 162.08640272360017 -7.903857068006559 0 -7.903857068006559 0 0 0 1.6989700043360187 0 0 [YG]AHW{I|L}G{I|L} 4.0067 - 1005 NaN NaN 312753.6 NaN 14140 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17841 75.212 NaN 1043000 35 0 203160 0.261 + 13110 KYLESFLAF 9 99 559.3001756147744 1116.5857982963487 2 559.300537109375 MULTI HCD FTMS 0 0 0 17839 680680.25 0.3380074091169058 5 -0.14963531494140625 2 Unmodified _KYLESFLAF_ ENSG00000124571|ENST00000265351|XPO5 72.96794272382148 0.008127836904478181 2 [YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F} 9 0 + 78.171 0 0 7.0009 7.0009 93.228 0 0 0 4.762036441594191 42.81620601977153 4.762036441594191 20.898255349109505 0 2.9247425010840047 0 0.6861818737241735 0 + + [YK]{I|L}ES{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[VS]S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[{I|L}A]Y[YE]K{I|L}A{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YE]K{I|L}A{M(Oxidation (M))|F};[KA]{M(Oxidation (M))|F}HH{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[YK]{I|L}[{I|L}A][YE]A{M(Oxidation (M))|F};[{I|L}A]Y[YE]{I|L}KA{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}[YE]{I|L}KA{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}[NP]K{I|L}A{M(Oxidation (M))|F} 7.0009;5.1293;5.1293;3.6042;3.6042;3.3842;3.3328;2.9987;2.9987;2.386 +;-;-;-;-;-;-;-;-;- + 1658 NaN NaN 238026.2 NaN 14141 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17842 75.215 NaN 127530 35 0 9116.1 0.261 -1 HLRMIYSKLL 10 54 645.3711934171899 1288.7278339011798 2 645.3698120117188 MULTI HCD FTMS 0 0 0 17839 49032.44140625 0.2674602192421616 4 -0.12018585205078125 3 Oxidation (M) _HLRM(Oxidation (M))IYSKLL_ tr|U7SRI4|U7SRI4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01614PE=4SV=1 10.799506525563784 0.4100970765206026 2 K{I|L}{I|L} 3 -1 29.693 0 0 2.304 0 0 916.4545765607437 0 916.4545765607437 0 24.744237387763093 0 0 0 0.5 0 0 0 K{I|L}{I|L} 2.304 + + 15 NaN NaN 111395.7 NaN 14142 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17843 75.218 NaN 173430 35 0 35867 0.264 + 17660 MACVADSF 8 46 422.1724119088804 NaN 0 422.1723327636719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MACVADSF_ ENSG00000144712|ENST00000456430|CAND2;nc|ENSG00000144712|O75155-2|CAND2 2.8892196856762586 0.38822285293237185 2 H 1 8 4.6041 0 0 0.54659 0 0 540.1915512574109 162.05552087955314 702.247072136964 0 0 0 0 0 0 0 0 0 H 0.54659 - 1 + NaN NaN 113916.1 NaN 14143 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17844 75.222 NaN 175460 35 0 22503 0.261 + 25948 SPDDLELEL 9 57 515.7502866876455 1029.4860204420909 2 515.7491455078125 MULTI HCD FTMS 0 0 0 17839 58864.3671875 0.688660027306427 2 -0.06220245361328125 5 Unmodified _SPDDLELEL_ ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant 19.256988751693697 0.19398022840297344 2 E{I|L}E{I|L} 4 5 37.607 0 0 3.653 0 0 527.2216664044937 0 527.2216664044937 0 28.65479093331686 0 0 0 0.805462187404089 0 0 0 + E{I|L}E{I|L} 3.653 + + 27 NaN NaN 111287.4 NaN 14144 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17845 75.225 NaN 85125 35 0 24240 0.261 -1 0 26 452.2778719714172 902.5411910096344 2 452.27740478515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.8824 0 0 737.461919624672 0 737.461919624672 0 15 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8824 - 3 + NaN NaN 93398.7 NaN 14145 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17846 75.228 NaN 212330 35 0 27270 0.261 + 11522 IYSEVMEALKL 11 56 648.3495627368923 1294.6845725405844 2 648.3491821289062 MULTI HCD FTMS 0 0 0 17839 55570.3125 0.8111155558576159 1 -0.0327911376953125 7 Unmodified _IYSEVMEALKL_ ENSG00000168300|ENST00000522514|PCMTD1;ENST00000521046.1_1_8:52773369-52773723:-|nuORF 40.72490554402381 0.13228144127095398 2 MEA{I|L}K{I|L} 6 5 53.761 0 0 4.1524 0 0 591.2905140607437 0 591.2905140607437 0 42.07834387816234 0 0 0 0.7302046884880938 0 0.3807196863200844 0 + MEA{I|L}K{I|L} 4.1524 + + 51 NaN NaN 115113 NaN 14146 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17847 75.232 NaN 583900 35 0 49397 0.263 + 11520 IYSEVATLI 9 89 504.78423660754805 1007.5539202818961 2 504.7844543457031 MULTI HCD FTMS 0 0 0 17839 37615.15234375 0.08804212287388255 10 -0.29035186767578125 8 Unmodified _IYSEVATLI_ ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-5|PCM1 39.957323273324995 0.06554068735427583 2 AT{I|L}{I|L} 4 5 25.213 0 0 2.5024 0 0 591.2903796747099 0 591.2903796747099 0 10.98787625510388 0 0 0 1.0387254899964358 0 0.3054621874040891 0 + AT{I|L}{I|L} 2.5024 + + 871 NaN NaN 185975.2 NaN 14147 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17848 75.235 NaN 142170 35 0 8669.7 0.261 -1 MIGIFHIF 8 63 497.2648084564197 992.5150639796394 2 497.26470947265625 MULTI HCD FTMS 0 0 0 17839 11450.189453125 0.13021724401042573 2 -0.06220245361328125 9 Oxidation (M) _M(Oxidation (M))IGIFHIF_ ENSG00000204979|ENST00000378186|MS4A13;nc|ENSG00000204979|Q5J8X5-2|MS4A13;nc|ENSG00000204979|Q5J8X5-3|MS4A13 11.114462752807354 0.5120171699125776 2 [QA]{I|L}[HQ]H{I|L}{M(Oxidation (M))|F} 8 -1 [QA] + + 20.635 -0.34093 -0.17124 2.079 2.079 59.774 0 0 0 0 3.1998499381268886 0 0 0 0 0 0 0 [QA]{I|L}[HQ]H{I|L}{M(Oxidation (M))|F} 2.079 - 87 + NaN NaN 114851.9 NaN 14148 3698 17839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17850 75.24 NaN 4331400 35 0 956990 0.327 + 4512 EYKIAFPYL 9 99 572.3080652985798 1142.6015776639595 2 572.3082885742188 MULTI HCD FTMS 0 0 0 17849 1989885.5 0.6708893546237767 2 -0.0612335205078125 1 Unmodified _EYKIAFPYL_ ENSG00000174231|ENST00000304992|PRPF8 126.56589448801843 0.0008132384440316759 2 [YE]K{I|L}A{M(Oxidation (M))|F}PY{I|L} 9 0 + 96.759 0 0 8.4683 8.4683 95.824 0 0 0 22.363467363607782 14.973024840566467 14.973024840566467 22.363467363607782 0 2.610924374808178 1.3979400086720375 3.06295299324845 0 + + [YE]K{I|L}A{M(Oxidation (M))|F}PY{I|L};[YG]{I|L}S{I|L}A{M(Oxidation (M))|F}PY{I|L};[YT][VG]{I|L}A{M(Oxidation (M))|F}PY{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}A{I|L}S{I|L}{[DS]|[MA]|[CV]|TT};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AA{I|L}A[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AAA{I|L}[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AAA[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A[K{I|L}]EY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[NV]|[RG]}[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}{I|L}[YV]Y{I|L} 8.4683;6.5111;6.0819;5.6559;4.1222;3.9681;3.9681;3.6861;3.6599;3.6599 +;-;-;-;-;-;-;-;-;- + 4058 NaN NaN 747488.5 NaN 14149 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17851 75.244 NaN 1320000 35 0 115010 0.261 + -1 LFILMMFF 8 110 539.2771125802416 NaN 0 539.2683715820312 PEAK HCD FTMS 0 0 0 17849 21199.494140625 0.9635806062347134 -1 0.0327911376953125 2 Oxidation (M) _LFILMM(Oxidation (M))FF_ REV__ENSG00000132164|ENST00000254488|SLC6A11 24.20995872069341 0.3821035703978675 2 {I|L}{M(Oxidation (M))|F}DP 4 -1 9.0884 0 0 0.84423 0 0 131.11383153079038 470.20312638012297 601.3169579109133 0 0 0 0 0 0.2614393726401688 0 0.5283773187068795 0 {I|L}{M(Oxidation (M))|F}DP 0.84423 - 947 + NaN NaN 290485.5 NaN 14150 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17852 75.248 NaN 231080 35 0 37852 0.261 + 2300 DLVLGNVEI 9 54 486.2740645209298 970.5335761086596 2 486.27398681640625 MULTI HCD FTMS 0 0 0 17849 50241.3046875 0.11829737307154971 3 -0.08739471435546875 3 Unmodified _DLVLGNVEI_ REV__ENSG00000181291|ENST00000631683|TMEM132E;REV__TMEM132E|p.V544Wfs*31|1|0.24|ENSG00000181291|chr17:34635008-34635008|G/-|frameshift_variant 41.8396318013385 0.056899836730939755 2 VE{I|L} 3 -1 39.693 0 0 4.0898 0 0 611.3280107793703 0 611.3280107793703 0 30.208077909868614 0 0 0 0.9247425010840047 0 0.4247425010840047 0 VE{I|L} 4.0898 + + 38 NaN NaN 120743.8 NaN 14151 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17853 75.251 NaN 311780 35 0 23035 0.261 + 11063 IYGEKLQFIF 10 70 629.3473944749965 1256.6802360167928 2 629.3473510742188 MULTI HCD FTMS 0 0 0 17849 49746.08203125 0.3685414932963343 2 -0.0612335205078125 4 Unmodified _IYGEKLQFIF_ ENSG00000152253|ENST00000282074|SPC25;ENST00000479309.6_1_2:169690730-169745796:-|nuORF 24.990960013464015 0.27735500881591096 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 7 33.94 0 0 2.7008 0 0 831.4542675036438 0 831.4542675036438 0 3.214562785677657 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.7008 + + 59 NaN NaN 133850.7 NaN 14152 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17854 75.255 NaN 332000 35 0 58588 0.263 -1 MPMNVADLI 9 52 510.2484562590706 1018.4823595849413 2 510.2488708496094 MULTI HCD FTMS 0 0 0 17849 169068.53125 0.29802849888124866 -11 0.2974700927734375 5 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 29.081581746732265 0.1154664336125038 2 EAD{I|L}{I|L} 5 -1 49.949 0 0 4.9042 0 0 459.1909657209 0 459.1909657209 0 18.26606256887672 0 0 0 1.5 0 0 0 EAD{I|L}{I|L} 4.9042 - 56 NaN NaN 139171.5 NaN 14153 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17855 75.258 NaN 196340 35 0 19306 0.261 + 15094 LMEMEMLSLF 10 56 622.2936745900838 1242.5727962469675 2 622.7950439453125 MULTI HCD FTMS 0 0 0 17849 46857.5 0.2875533143164036 -14 0.375762939453125 6 Unmodified _LMEMEMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 24.020572477871973 0.2864316864133941 2 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 10 7 + 61.132 0 0 4.9198 4.9198 83.717 0 0 0 33.696662315049934 6.45119965945284 6.45119965945284 3.521825181113627 0 1.274227503252014 2 0.3494850021680094 0 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YY[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 4.9198;4.6363 -;- 31 + NaN NaN 124282 NaN 14154 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17856 75.261 NaN 256810 35 0 31312 0.262 + 25949 SPDDLELEL 9 80 515.7502866876455 1029.4860204420909 2 515.7507934570312 MULTI HCD FTMS 0 0 0 17849 14453.287109375 0.1690904289127132 3 -0.08739471435546875 7 Unmodified _SPDDLELEL_ ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant 25.399314129420986 0.14091189997036632 2 [{I|L}P]D[RN]ACE{I|L} 9 5 + 39.944 0 0 3.8799 3.8799 84.255 0 0 0 0.4744693677107463 24.726978824635573 0.4744693677107463 8.23908740944319 0 0.4247425010840047 1 0.3054621874040891 0 [{I|L}P]D[RN]ACE{I|L};[DP]{I|L}[RN]ACE{I|L};{[{M(Oxidation (M))|F}H]|[RQ]}{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}E{I|L};[VP]E[RN]ACE{I|L};[{I|L}P]{[WT]|[RM]}QQEE;[{M(Oxidation (M))|F}E]{I|L}{I|L}YAQ{M(Oxidation (M))|F} 3.8799;3.0796;3.0011;2.9086;0.30869;0.30369 -;-;-;-;-;- 169 NaN NaN 133344.3 NaN 14155 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17857 75.265 NaN 190520 35 0 23204 0.261 + 15717 LPETTFPAL 9 53 494.7713353322565 NaN 0 494.7712707519531 PEAK HCD FTMS 0 0 0 17849 50006.4375 0.7674670397355265 -4 0.10092926025390625 8 Unmodified _LPETTFPAL_ ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant 16.942295170755138 0.2079222001251384 2 D{M(Oxidation (M))|F} 2 8 18.711 0 0 1.8948 0 0 184.15990591666304 538.2517794244749 722.4116853411379 0 0 0 0 0 0.9247425010840047 0 0 0 D{M(Oxidation (M))|F} 1.8948 - 14 + NaN NaN 123198.8 NaN 14156 3699 17849 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17859 75.269 NaN 10510000 35 0 1731000 0.327 + 1408 AYQHLFYLL 9 90 584.313453362459 1166.6123537917179 2 584.3139038085938 MULTI HCD FTMS 0 0 0 17858 7254536 0.19080450216960304 7 -0.19866943359375 1 Unmodified _AYQHLFYLL_ ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 123.09622228370866 0.0010236603636890153 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 102.14 0 0 8.7549 8.7549 91.404 0 0 0 21.00711233356286 16.478174818886373 16.478174818886373 7.154243254584287 0 2.8494850021680094 1.5228787452803376 0.25 0.8287886595888969 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QH{I|L}{M(Oxidation (M))|F}{I|L}{I|L}Y;[YQ]AH{I|L}{M(Oxidation (M))|F}Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAH{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHA{I|L}{M(Oxidation (M))|F}{I|L}Y{I|L} 8.7549;8.1417;8.0884;7.5733;7.4017;7.3905;7.1751;6.9542;6.9294;6.8867 +;-;-;-;-;-;-;-;-;- + 4916 NaN NaN 497184.2 NaN 14157 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17860 75.274 NaN 5211000 35 0 2382800 0.2 + 17293 LYPQFMFHL 9 75 606.2992549835044 1210.5839570338087 2 606.2997436523438 MULTI HCD FTMS 0 0 0 17858 2703261.75 0.17246329337395494 12 -0.32224273681640625 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 104.79918948944588 0.003791450360204016 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 91.142 0 0 7.5287 7.5287 93.566 0 0 0 60.74778283713697 6.395067726032551 6.395067726032551 15.902639302688954 0 2.4604093769761874 2 0 0.6694451763165201 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}W{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[RH]P[DG]{M(Oxidation (M))|F}Q[NG]A{I|L};[H{I|L}][MD]MAP[{I|L}V]AN 7.5287;6.2151;5.3989;4.6383;2.5403;2.2965;2.1848;1.7802;1.1649;1.1054 +;-;+;-;-;-;-;-;-;- + 571 + NaN NaN 572233.8 NaN 14158 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17861 75.276 NaN 1613800 35 0 159260 0.261 + 34395 YPEPFLIKL 9 110 560.3260567071405 1118.637560481081 2 560.3260498046875 MULTI HCD FTMS 0 0 0 17858 986633.4375 0.5912887572494618 -3 0.09160614013671875 3 Unmodified _YPEPFLIKL_ ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP 110.6747026088012 0.0028322563155251486 2 YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L} 9 0 + 88.427 0 0 7.9048 7.9048 94.462 0 0 0 46.00823849280299 12.944539621753535 12.944539621753535 17.245462655597095 0 2.4489700043360187 1.5228787452803376 0.7059771852360797 0.3054621874040891 + + YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L};YP{M(Oxidation (M))|F}[EP]{I|L}{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}Y{I|L}{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}{I|L}Y{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}{I|L}{I|L}YK{I|L};[K{I|L}][QT]K{I|L}{M(Oxidation (M))|F}E{I|L};[EP]P{M(Oxidation (M))|F}{I|L}{I|L}K{I|L}Y;[HK]C(Carbamidomethyl (C))[HA]{I|L}{I|L}K{I|L};[EP]P{M(Oxidation (M))|F}{I|L}{I|L}KY{I|L};[K{I|L}][QT]K{I|L}E{M(Oxidation (M))|F}{I|L} 7.9048;6.3632;4.1875;4.095;3.3344;2.2681;1.8211;1.6876;1.6497;1.6244 +;-;-;-;-;-;-;-;-;- + 1708 + NaN NaN 341585.8 NaN 14159 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17862 75.28 NaN 630350 35 0 76391 0.261 + 35633 YYIFIPSKF 9 63 589.318133034262 1176.621713135324 2 589.3180541992188 MULTI HCD FTMS 0 0 0 17858 320988.65625 0.011497043803207495 48 -0.8264083862304688 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 51.629811660486645 0.02929079705179888 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 67.884 0 0 5.7694 5.7694 84.137 0 0 0 1.250612633917001 1.250612633917001 1.250612633917001 1.250612633917001 0 2.6549471895720984 1.6989700043360187 0 0.3252574989159953 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{I|L}YPSK{M(Oxidation (M))|F};YY{I|L}{I|L}{M(Oxidation (M))|F}[KS]P{M(Oxidation (M))|F};[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[KS]P{M(Oxidation (M))|F} 5.7694;5.6631;5.1802;3.7748;1.7286;0.35454 -;-;-;-;-;- 459 + NaN NaN 208124.4 NaN 14160 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17863 75.283 NaN 632110 35 0 90212 0.261 + 24896 RYQTFLQLL 9 88 591.337159985487 1180.659767037774 2 591.838623046875 MULTI HCD FTMS 0 0 0 17858 168807.5625 0.5449378014294292 3 -0.087432861328125 5 Unmodified _RYQTFLQLL_ ENSG00000122952|ENST00000373944|ZWINT 43.981846655682396 0.04706587046877104 2 T{M(Oxidation (M))|F}{I|L}Q{I|L}{I|L} 6 3 63.621 0 0 5.3886 0 0 447.2237004295709 0 447.2237004295709 0 38.55896923271672 0 0 0 2.274227503252014 0 0.4247425010840047 0 + T{M(Oxidation (M))|F}{I|L}Q{I|L}{I|L} 5.3886 + + 467 NaN NaN 199907.1 NaN 14161 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17864 75.286 NaN 256440 35 0 35936 0.262 -1 MPDIDFNL 8 60 490.7232540056682 979.4319550781364 2 490.723388671875 MULTI HCD FTMS 0 0 0 17858 172784.328125 0.4933025270843155 3 -0.087432861328125 6 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 34.10243960390752 0.30669083636501265 2 DD{M(Oxidation (M))|F}N{I|L} 5 -1 44.993 0 0 4.5938 0 0 357.16990859199376 0 357.16990859199376 0 30.300084529637985 0 0 0 0.805462187404089 0 0 0.3494850021680094 DD{M(Oxidation (M))|F}N{I|L} 4.5938 - 93 NaN NaN 140737.2 NaN 14162 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17865 75.29 NaN 126780 35 0 19226 0.261 -1 LNLRVLDGCVI 11 31 636.3609386125758 1270.7073242919514 2 636.8627319335938 MULTI HCD FTMS 0 0 0 17858 51209.3125 0.6840684023318132 1 -0.03182220458984375 7 Carbamidomethyl (C) _LNLRVLDGC(Carbamidomethyl (C))VI_ CEP97|p.Y236C|1|0.4|ENSG00000182504|chr3:101732633-101732633|A/G|missense_variant 4.5288652416199255 0.3990586020344083 2 V{I|L} 2 -1 25.969 0 0 2.0437 0 0 1040.542439069909 0 1040.542439069909 0 18.979400086720375 0 0 0 0.5 0 0 0 V{I|L} 2.0437 + + 3 NaN NaN 103871.1 NaN 14163 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17866 75.293 NaN 197930 35 0 15794 0.261 -1 SYADQMFLL 9 55 552.2575992815406 1102.500645629881 2 552.2567138671875 MULTI HCD FTMS 0 0 0 17858 42740.23828125 0.022470508361529747 30 -0.59820556640625 8 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 31.995 0 0 2.902 0 0 711.2565174787125 0 711.2565174787125 0 8.472418817627766 0 0 0 0.7302046884880937 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.902 + + 278 NaN NaN 129580.6 NaN 14164 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17867 75.296 NaN 1468500 35 0 137760 0.261 + -1 YVDLSTDMCL 10 104 608.7635221415263 1215.5124913498526 2 608.7631225585938 MULTI HCD FTMS 0 0 0 17858 214108.96875 0.3358730116711375 -3 0.09160614013671875 9 Carbamidomethyl (C) _YVDLSTDMC(Carbamidomethyl (C))L_ REV__ENSG00000100612|ENST00000557185|DHRS7;REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF;REV__ENST00000556502.1_1_14:60619584-60632027:-|nuORF;REV__nc|ENSG00000100612|Q9Y394-2|DHRS7 4.3292370932331545 0.45238836448149167 2 ME{I|L}RS 5 -1 31.643 0 0 2.6033 0 0 131.93659492791613 464.23896204166255 596.1755569695787 0 0 0 0 0 0 0 0.555462187404089 1.1307196863200843 ME{I|L}RS 2.6033 - 2344 + NaN NaN 314482.2 NaN 14165 3700 17858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17869 75.301 NaN 6034400 35 0 854290 0.327 + 32070 VYQLRFQFL 9 111 607.3396435203007 1212.6647341074013 2 607.3397827148438 MULTI HCD FTMS 0 0 0 17868 2312531.25 0.3425460433059742 -2 0.0612335205078125 1 Unmodified _VYQLRFQFL_ ENSG00000068654|ENST00000263857|POLR1A 164.5152109175784 6.8106583686994766E-09 2 VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 9 0 + 104.14 0 0 8.588 8.588 92.88 0 0 0 61.816271552006654 10.202264589233394 10.202264589233394 9.208187539523749 0 2.860924374808178 1.2218487496163564 0 1.8243923658886185 + + VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[Y{I|L}]GG{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[MS]|[{M(Oxidation (M))|F}A]};[YV][AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 8.588;7.8287;7.4455;7.3249;7.183;6.6861;6.6861;6.5691;6.5106;6.4237 +;-;-;-;+;-;-;-;-;- + 8502 + NaN NaN 810918.1 NaN 14166 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17870 75.306 NaN 945720 35 0 110380 0.261 + 12847 KYFEVPSVLL 10 99 597.8422319297273 1193.6699109262545 2 597.8421020507812 MULTI HCD FTMS 0 0 0 17868 208601.671875 0.1023706375661895 8 -0.2090911865234375 2 Unmodified _KYFEVPSVLL_ ENSG00000131966|ENST00000254286|ACTR10 34.221707139014875 0.19555013683537745 2 EVPW{I|L}{I|L} 6 5 45.032 0 0 3.7726 0 0 438.22566420722814 0 438.22566420722814 0 25.282781869090446 0 0 0 1.6861818737241734 0 0 0 EVPW{I|L}{I|L} 3.7726 - 1409 NaN NaN 233039.9 NaN 14167 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17871 75.309 NaN 1762800 35 0 226910 0.261 + 1221 AYLLYSLHL 9 82 546.8081431998717 1091.6017334665432 2 546.8082275390625 MULTI HCD FTMS 0 0 0 17868 613227.875 0.15685699548609006 -5 0.14611053466796875 3 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 161.8943921545576 8.236690082142223E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 104.43 0 0 9.5671 9.5671 89.705 0 0 0 1.0784094103974695 1.0784094103974695 1.0784094103974695 1.0784094103974695 0 2.7302046884880937 1.6989700043360187 1.1549471895720984 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};AY{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}S{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YSH{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}SH{I|L}{I|L};{I|L}{I|L}YAYS{I|L}H{I|L};AY{I|L}{I|L}Y{[HG]|PP}[KQ];{I|L}{I|L}YAYSH{I|L}{I|L} 9.5671;9.4683;8.4688;8.3922;7.2938;6.6656;5.8309;5.4906 +;+;-;-;-;-;-;- + 838 NaN NaN 371950 NaN 14168 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17872 75.313 NaN 317640 35 0 25552 0.262 + 25753 SLAVVMHL 8 72 435.25110079159066 NaN 0 435.2509460449219 PEAK HCD FTMS 0 0 0 17868 224050.890625 0.7468983880118368 -16 0.4369964599609375 4 Unmodified _SLAVVMHL_ ENST00000378509.8_1_7:133979072-133979261:-|nuORF 5.230669730166228 0.38822285293237185 2 E 1 8 3.4949 0 0 0.40241 0 0 490.31441364197195 246.11057459049064 736.4249882324626 0 0 0 0 0 0 0 0 0 E 0.40241 - 11 + NaN NaN 138484.2 NaN 14169 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17873 75.316 NaN 477110 35 0 35436 0.261 + -1 SYKNVCKVCK 10 95 614.8132013099005 NaN 0 614.7931518554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _SYKNVC(Carbamidomethyl (C))KVCK_ REV__ENSG00000131061|ENST00000375200|ZNF341;REV__nc|ENSG00000131061|Q9BYN7-2|ZNF341 13.042465956692817 0.3290217458104555 2 QAWVYY 6 -1 29.513 0 0 2.4041 0 0 149.0937170964574 265.1300448053344 414.2237619017918 0 0 0 0 0 0.4247425010840047 0 0 0 QAWVYY 2.4041 - 950 + NaN NaN 169242.5 NaN 14170 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17874 75.319 NaN 290310 35 0 37704 0.262 + -1 FSLTCIAVI 9 55 512.2808280339614 1022.5471031347228 2 512.7730102539062 MULTI HCD FTMS 0 0 0 17868 15976.9365234375 0.700943080555583 2 -0.05561065673828125 6 Carbamidomethyl (C) _FSLTC(Carbamidomethyl (C))IAVI_ REV__ENSG00000153246|ENST00000283243|PLA2R1 16.942295170755138 0.21397866736869717 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV 8 -1 29.385 0 0 2.8738 0 0 0 127.08769475305736 127.08769475305736 13.900925144087779 0 0 0 0 0 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV 2.8738 - 146 NaN NaN 141576.2 NaN 14171 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17875 75.323 NaN 261860 35 0 52434 0.261 + -1 GMLFSTPAM 9 52 493.7218475005688 NaN 0 493.734619140625 PEAK HCD FTMS 0 0 0 17868 7573.51708984375 0.7759418822115952 1 -0.02616119384765625 7 2 Oxidation (M) _GM(Oxidation (M))LFSTPAM(Oxidation (M))_ REV__ENSG00000105339|ENST00000519811|DENND3;REV__nc|ENSG00000105339|A2RUS2-2|DENND3;REV__nc|ENSG00000105339|A2RUS2|DENND3 11.640296217721598 0.23883959125015683 2 AP{M(Oxidation (M))|F}[DG]PA 7 -1 30.221 0 0 3.0668 0 0 165.0549079669035 162.0557802789672 327.11068824587073 0 0 0 0 0 0 0 0.8494850021680094 0 AP{M(Oxidation (M))|F}[DG]PA 3.0668 - 52 + NaN NaN 153995.7 NaN 14172 3701 17868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17877 75.327 NaN 1254200 35 0 85033 0.327 + 17358 LYQDKFPFF 9 96 602.8052567154477 1203.5959604976954 2 602.8056640625 MULTI HCD FTMS 0 0 0 17876 554537.8125 0.5897226173045599 2 -0.0555877685546875 1 Unmodified _LYQDKFPFF_ ENSG00000144028|ENST00000323853|SNRNP200 96.36657018975838 0.004359138328518304 2 {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 98.414 0 0 8.1767 8.1767 92.296 0 0 0 77.47215668868726 9.137342758552691 9.137342758552691 9.208187539523749 0 2.473197507588033 2 0.4247425010840047 0.6861818737241735 + + {I|L}YQDK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}Y[AG]DK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YQ[YG]G{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]QNY{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]QGGY{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]NY{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]NQY{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]GGY{I|L}P{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YQ{[HG]|PP}SN{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[Y{I|L}]QNP{M(Oxidation (M))|F}{I|L}Y{M(Oxidation (M))|F} 8.1767;7.4116;5.7839;5.4849;4.7199;4.7199;4.5513;3.9584;3.8322;3.8173 +;-;-;-;-;-;-;-;-;- + 3046 + NaN NaN 297348.6 NaN 14173 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17878 75.332 NaN 456020 35 0 31380 0.261 + 11606 IYTPIFNEY 9 90 580.2878254472174 1158.5610979612347 2 580.2875366210938 MULTI HCD FTMS 0 0 0 17876 126290.6640625 0.1915685612638089 5 -0.14068603515625 2 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 69.10491478415734 0.009377850133389008 2 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY 9 0 + 56.809 0 0 4.9034 4.9034 82.223 0 0 0 0.15794267183231625 14.973024840566467 0.15794267183231625 0.15794267183231625 0 1.610924374808178 1.0457574905606752 0.6139829889124311 0 + + [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}GGEY;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}GGEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}[YE]N;[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}[YE]N;[Y{I|L}]GY{[QS]|[NT]}{I|L}TTN;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}[YG]TTN;[YT]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[YG]TTN;[Y{I|L}]T{[QV]|[N{I|L}]|[RA]|[KV]}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y 4.9034;4.8898;4.1086;4.095;3.6037;3.5901;3.3942;3.1399;3.1263;2.9708 +;-;-;-;-;-;-;-;-;- + 908 NaN NaN 163002.2 NaN 14174 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17879 75.335 NaN 635480 35 0 61657 0.261 + 2471 DRGLCRDCTF 10 95 593.2615683279449 1184.5085837226898 2 593.2606201171875 MULTI HCD FTMS 0 0 0 17876 189188.671875 0.7160534063244369 -1 0.02616119384765625 3 Unmodified _DRGLCRDCTF_ REV__ENST00000487651.5_1_7:100456676-100456913:+|nuORF 17.44264345198275 0.3479594151168503 2 ET{M(Oxidation (M))|F} 3 -1 32.619 0 0 2.7538 0 0 789.3186076602275 0 789.3186076602275 0 24.5205343810445 0 0 0 0.5 0 0.3807196863200844 0 ET{M(Oxidation (M))|F} 2.7538 - 585 NaN NaN 187537 NaN 14175 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17880 75.339 NaN 531760 35 0 72554 0.261 + 4444 EYGPIHILW 9 81 564.2978303293603 1126.5811077255205 2 564.2978515625 MULTI HCD FTMS 0 0 0 17876 124663.96875 0.08500999428897772 9 -0.23493194580078125 4 Unmodified _EYGPIHILW_ ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7 32.116972079565 0.101532291542178 2 {I|L}G{[MG]|[TS]}[KT]{I|L}W 8 6 32.312 0 0 2.8682 0 0 222.10079481003874 0 222.10079481003874 0 22.759621790487685 0 0 0 0.9916440611282625 0 0 0 {I|L}G{[MG]|[TS]}[KT]{I|L}W 2.8682 - 80 + NaN NaN 178839.5 NaN 14176 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17881 75.342 NaN 371530 35 0 110050 0.261 + 14933 LLEKPRFF 8 68 525.3108276528798 1048.6071023725594 2 525.3106689453125 MULTI HCD FTMS 0 0 0 17876 87336.3203125 0.16699327733633162 6 -0.170166015625 5 Unmodified _LLEKPRFF_ ENST00000231572.7_1_5:167943936-167944917:+|nuORF 20.453626601364224 0.4433031943603284 2 T{M(Oxidation (M))|F} 2 7 19.821 0 0 1.8902 0 0 782.4812611633782 0 782.4812611633782 0 12.74227503252014 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 1.8902 - 62 + NaN NaN 163731.8 NaN 14177 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17882 75.345 NaN 378910 35 0 31813 0.261 + 29527 TYVYFTNEL 9 91 575.2771155784379 1148.5396782236758 2 575.79296875 MULTI HCD FTMS 0 0 0 17876 23233.216796875 0.25171980428529045 6 -0.170166015625 6 Unmodified _TYVYFTNEL_ ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10 63.227496030279354 0.01306643085373406 2 [YT]VY{M(Oxidation (M))|F}TNE{I|L} 9 0 + 73.087 0 0 6.3635 6.3635 87.58 0 0 0 7.447274948966935 14.973024840566467 7.447274948966935 7.447274948966935 0 2.1989700043360187 1.0457574905606752 0.3807196863200844 0 + + [YT]VY{M(Oxidation (M))|F}TNE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TNE{I|L};[YT]VY{M(Oxidation (M))|F}TGGE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TGGE{I|L};YYVT{M(Oxidation (M))|F}TNE{I|L};YYVT{M(Oxidation (M))|F}TDQ{I|L};{[SA]|[TG]}T[PG]{I|L}{M(Oxidation (M))|F}TNE{I|L};YYVT{M(Oxidation (M))|F}TGGE{I|L};{[SA]|[TG]}T[PG]{I|L}{M(Oxidation (M))|F}TDQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}{I|L}{I|L}{[QC]|[C(Carbamidomethyl (C))A]} 6.3635;5.7151;5.5618;4.9133;4.7743;4.5106;3.7434;3.7338;3.4797;3.16 +;-;-;-;-;-;-;-;-;- + 1942 NaN NaN 160574.1 NaN 14178 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17883 75.349 NaN 1056800 35 0 139400 0.261 + 15533 LPDPIIIHL 9 99 515.8184081556342 1029.6222633780683 2 515.8182373046875 MULTI HCD FTMS 0 0 0 17876 204066.5625 0.3034709037611147 -4 0.12018585205078125 7 Unmodified _LPDPIIIHL_ ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B 104.79918948944588 0.003791450360204016 2 {I|L}PDP{I|L}{I|L}{I|L}H{I|L} 9 0 + 105.82 0 0 10.278 10.278 96.842 0 0 0 82.57515625508539 10.642492736872597 10.642492736872597 16.51741229020267 0 3.024227503252014 1.5228787452803376 0.75 0 + + {I|L}PDP{I|L}{I|L}{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}{I|L}H{I|L};[DP]{I|L}{I|L}P{I|L}{I|L}H{I|L};[DP]{I|L}P{I|L}{I|L}{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}H{I|L}{I|L};[{I|L}P]DP{I|L}{I|L}H{I|L}{I|L};[{I|L}P]D{I|L}{I|L}P{I|L}H{I|L};[DP]{I|L}{I|L}P{I|L}H{I|L}{I|L};[DP]{I|L}P{I|L}{I|L}H{I|L}{I|L} 10.278;8.6738;8.657;8.3592;8.3424;7.9787;7.9619;7.7248;7.6641;7.6474 +;-;+;-;-;-;-;-;-;- + 1283 + NaN NaN 255775.7 NaN 14179 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17884 75.352 NaN 224380 35 0 10773 0.261 + 16764 LYDIILKNF 9 85 569.8289472287493 1137.6433415242984 2 569.8284912109375 MULTI HCD FTMS 0 0 0 17876 20756.38671875 0.010513701168200319 35 -0.6284942626953125 8 Unmodified _LYDIILKNF_ ENSG00000092010|ENST00000206451|PSME1 70.33199760932243 0.0089807860198535 2 [Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F} 9 0 + 91.041 0 0 8.0026 8.0026 93.54 0 0 0 77.22840819169134 16.478174818886373 16.478174818886373 12.09544243948811 0 2.6549471895720984 1.3979400086720375 0 0.28872548999643577 + + [Y{I|L}]D{I|L}{I|L}{I|L}KN{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}KGG{M(Oxidation (M))|F};[Y{I|L}]D{I|L}{I|L}{I|L}K{M(Oxidation (M))|F}N;[Y{I|L}]D{I|L}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}N 8.0026;6.9394;5.9351;3.6725 +;-;-;- + 740 + NaN NaN 124834.7 NaN 14180 3702 17876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17886 75.357 NaN 3094800 35 0 287850 0.327 -1 FITSCSISDPM 11 108 608.7635221415263 1215.5124913498526 2 608.763427734375 MULTI HCD FTMS 0 0 0 17885 637470 1 0 0 1 Oxidation (M) _FITSCSISDPM(Oxidation (M))_ ENSG00000183066|ENST00000328823|WBP2NL 5.731851221503515 0.39378271418728467 2 {M(Oxidation (M))|F}N{I|L}R{M(Oxidation (M))|F}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 -1 35.544 0 0 2.9242 0 0 131.93691411069295 0 131.93691411069295 0 0.4861044626386999 0 0 0 0 0 0.809894379144197 0.930884548956689 {M(Oxidation (M))|F}N{I|L}R{M(Oxidation (M))|F}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.9242 - 3710 + NaN NaN 439061 NaN 14181 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17887 75.361 NaN 634080 35 0 140610 0.262 + 1736 CKKYYVFL 8 75 532.2864497733162 1062.5583466134324 2 532.2716674804688 MULTI HCD FTMS 0 0 0 17885 28810.876953125 0.0636940500533554 15 -0.36057281494140625 2 Unmodified _CKKYYVFL_ REV__ENSG00000141252|ENST00000437048|VPS53;REV__ENST00000572607.1_1_17:454958-465900:-|nuORF;REV__nc|ENSG00000141252|Q5VIR6-1|VPS53;REV__nc|ENSG00000141252|Q5VIR6-2|VPS53;REV__nc|ENSG00000141252|Q5VIR6-3|VPS53 14.581692164780916 0.48650662947107914 2 [YG]AHW{I|L}G{I|L} 8 -1 44.614 0 0 4.1988 0 0 0 162.08645230104028 162.08645230104028 3.424005240709036 0 0 0 0 0 1.5228787452803376 0 0 [YG]AHW{I|L}G{I|L} 4.1988 - 412 NaN NaN 197827.4 NaN 14182 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17888 75.365 NaN 577510 35 0 88029 0.261 + 1071 AYGWVSATF 9 65 501.24001567280885 1000.4654784124177 2 501.2403564453125 MULTI HCD FTMS 0 0 0 17885 319816.96875 1 0 0 3 Unmodified _AYGWVSATF_ ENSG00000148110|ENST00000375344|MFSD14B;nc|ENSG00000148110|Q5SR56-2|MFSD14B 97.07464715276575 0.004340583992084827 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWVSAT{M(Oxidation (M))|F} 9 0 + 79.108 0 0 7.9071 7.9071 94.425 0 0 0 11.712294914416304 49.186296826174996 11.712294914416304 16.93574972449312 0 2.5 1.5228787452803376 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWVSAT{M(Oxidation (M))|F};[YQ]WVSAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWV[TA]S{M(Oxidation (M))|F};{I|L}[QP][HT]SAT{M(Oxidation (M))|F};{I|L}[PG]A[HT]SAT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WK]DAT{M(Oxidation (M))|F};{I|L}[QP]S[HT]AT{M(Oxidation (M))|F};{I|L}[PG]AS[HT]AT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GWVD[YK];[YQ]WV[TA]S{M(Oxidation (M))|F} 7.9071;6.2143;5.8112;5.6379;5.513;4.6076;4.4127;4.2878;4.2833;4.1184 +;-;-;-;-;-;-;-;-;- + 984 NaN NaN 187891.2 NaN 14183 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17889 75.368 NaN 158000 35 0 48834 0.261 -1 IPMPDFDL 8 40 482.2282648291911 962.4419767251823 2 482.22869873046875 MULTI HCD FTMS 0 0 0 17885 161749.234375 0.5303705705240447 -10 0.271575927734375 4 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 36.04419817259434 0.28174663821216267 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}EP{I|L} 8 -1 + 37.88 0 0 3.9359 3.9359 89.662 0 0 0 4.935012637084171 11.8943306386236 4.935012637084171 37.880325230808154 0 0.4247425010840047 0 0.4247425010840047 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}EP{I|L} 3.9359 - 47 NaN NaN 128694.7 NaN 14184 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17890 75.371 NaN 55177 35 0 6866.1 0.261 -1 0 34 457.2643155749803 912.5140782167606 2 457.2637634277344 MULTI HCD FTMS 0 0 0 17885 61639.0390625 0.423408570696883 30 -0.5426101684570312 5 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}K 3 -1 8.072 0 0 0.88459 0 0 0 539.2723844513887 539.2723844513887 8.071968632008437 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}K 0.88459 - 4 NaN NaN 102503.4 NaN 14185 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17891 75.375 NaN 353150 35 0 71470 0.261 + 11262 IYLPYLHEW 9 55 617.3186188944503 1232.6226848557005 2 617.3170166015625 MULTI HCD FTMS 0 0 0 17885 141137.4375 0.4186608002465024 -3 0.087432861328125 6 Unmodified _IYLPYLHEW_ ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF 34.10243960390752 0.09241788333544565 2 [Y{I|L}]{I|L}P 4 5 40.802 0 0 3.3102 0 0 0 743.3175142877561 743.3175142877561 32.70303756120384 0 0 0 0 1 1.6989700043360187 0 0 + [Y{I|L}]{I|L}P 3.3102 + + 33 + NaN NaN 161342.2 NaN 14186 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17892 75.378 NaN 253610 35 0 30655 0.261 + 28692 TSIAMKQLLC 10 62 554.2984274613225 NaN 0 554.2847290039062 PEAK HCD FTMS 0 0 0 17885 24196.326171875 1 0 0 7 Unmodified _TSIAMKQLLC_ REV__ENST00000477239.1_1_20:23350773-23351022:+|nuORF 9.38312468134398 0.33215363477037435 2 A{M(Oxidation (M))|F}A 3 -1 16.198 0 0 1.4638 0 0 204.11704482314536 610.3026829223005 814.4197277454459 0 0 0 0 0 0 0 0 0 A{M(Oxidation (M))|F}A 1.4638 - 112 + NaN NaN 147566.2 NaN 14187 3703 17885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17894 75.383 NaN 1290100 35 0 298390 0.327 + 4513 EYKIAFPYL 9 84 572.3080652985798 1142.6015776639595 2 572.3081665039062 MULTI HCD FTMS 0 0 0 17893 498778.65625 0.168163088173504 7 -0.17934417724609375 1 Unmodified _EYKIAFPYL_ ENSG00000174231|ENST00000304992|PRPF8 96.28474662873226 0.004361282420133734 2 [YE]K{I|L}A{M(Oxidation (M))|F}PY{I|L} 9 0 + 56.85 0 0 4.9755 4.9755 84.403 0 0 0 5.041419085869521 5.041419085869521 5.041419085869521 5.041419085869521 0 1.8979400086720375 1.154901959985743 0 0 + + [YE]K{I|L}A{M(Oxidation (M))|F}PY{I|L};[YG]{I|L}[TA]V{M(Oxidation (M))|F}PY{I|L};[YT][Q{I|L}]V{M(Oxidation (M))|F}PY{I|L};[YT][{I|L}A]GV{M(Oxidation (M))|F}PY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AAA[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AA{I|L}A[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[NV]|[RG]}[YV]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AA{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[DS]|[MA]|[CV]|TT};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}AA{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{[DS]|[MA]|[CV]|TT};[YG]{I|L}[Y{I|L}]AAPY{I|L} 4.9755;4.5342;4.298;4.0345;3.8588;3.8588;3.5506;1.5026;1.5026;1.4073 +;-;-;-;-;-;-;-;-;- + 1847 + NaN NaN 299173.6 NaN 14188 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17895 75.387 NaN 1069300 35 0 140740 0.261 -1 TPQFPDMIL 9 96 539.26788511357 1076.5212172939398 2 539.2683715820312 MULTI HCD FTMS 0 0 0 17893 411365.875 0.021117899762047133 -34 0.9319381713867188 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 36.506200033944 0.08138327636155518 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][DP]{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 37.227 0 0 3.4581 3.4581 81.077 0 0 0 1.3984855221736154 9.42281354923378 1.3984855221736154 1.3984855221736154 0 1.3252574989159953 0.958607314841775 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT][DP]{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L} 3.4581;3.3282 -;- 1198 NaN NaN 256802.3 NaN 14189 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17896 75.391 NaN 635430 35 0 200510 0.263 -1 0 57 413.1935129102702 824.3724728873405 2 413.19366455078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 V[DG]{M(Oxidation (M))|F} 4 -1 6.9112 0 0 0.83836 0 0 388.1748219220719 0 388.1748219220719 0 4.692737604564028 0 0 0 0 0 0 0 V[DG]{M(Oxidation (M))|F} 0.83836 - 37 NaN NaN 201146.9 NaN 14190 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17897 75.394 NaN 281490 35 0 53497 0.261 + -1 SAKCCKLPCAW 11 53 422.8659310410028 1265.5759637232084 3 422.8663330078125 MULTI HCD FTMS 0 0 0 17893 26144.4609375 0.18119251798773053 1 -0.0294952392578125 4 Carbamidomethyl (C) _SAKC(Carbamidomethyl (C))CKLPCAW_ REV__ENSG00000154237|ENST00000388948|LRRK1 1.214830529360525 0.41359283248740725 2 SA 2 -1 17.959 0 0 1.419 0 0 0 1104.4728886465386 1104.4728886465386 7.501225267834 0 0 0 0 0 0 0 0 SA 1.419 + + 8 + NaN NaN 132560.5 NaN 14191 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17898 75.398 NaN 236610 35 0 13912 0.261 + 4558 EYLKNVLLQF 10 67 633.8582027881145 1265.7018526430288 2 633.858642578125 MULTI HCD FTMS 0 0 0 17893 85913.65625 0.7031378947720424 1 -0.0294952392578125 5 Unmodified _EYLKNVLLQF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000135968|ENST00000309863|GCC2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF 53.40400417844725 0.06540992187319636 2 {I|L}{I|L}Q{M(Oxidation (M))|F} 4 6 40.918 0 0 3.2328 0 0 746.3959828107437 0 746.3959828107437 0 17.897131498072127 0 0 0 1.5 0 0 0 + {I|L}{I|L}Q{M(Oxidation (M))|F} 3.2328 + + 132 NaN NaN 135591.3 NaN 14192 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17899 75.401 NaN 422300 35 0 50288 0.262 + 10160 IFSKIVSLF 9 70 527.3210316197388 1052.6275103062776 2 527.3212280273438 MULTI HCD FTMS 0 0 0 17893 83902.9609375 0.48541900534198795 -7 0.20517730712890625 6 Unmodified _IFSKIVSLF_ ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B 83.42873516780209 0.004742894019233849 2 {I|L}{M(Oxidation (M))|F}SK{I|L}VS{I|L}{M(Oxidation (M))|F} 9 0 + 76.111 0 0 7.2306 7.2306 88.208 0 0 0 5.211440694835829 5.211440694835829 5.211440694835829 5.211440694835829 0 2.548455006504028 0 1.555462187404089 0 + + {I|L}{M(Oxidation (M))|F}SK{I|L}VS{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}K{I|L}VS{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}VS{I|L}{M(Oxidation (M))|F};{I|L}AYK{I|L}VS{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}VS{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}K{I|L}VS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}VS{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}K{I|L}TVV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}K{I|L}VS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}TVV{M(Oxidation (M))|F} 7.2306;6.7355;6.0497;5.9703;5.1967;5.193;4.5072;4.1429;3.6541;3.4572 +;-;+;-;-;-;-;-;-;- + 223 + NaN NaN 167268.9 NaN 14193 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17900 75.404 NaN 107420 35 0 13504 0.261 + 22448 QQLIEVEI 8 43 486.2740645209298 970.5335761086596 2 486.2745361328125 MULTI HCD FTMS 0 0 0 17893 21566.56640625 0.05078029258796818 8 -0.20867156982421875 7 Unmodified _QQLIEVEI_ ENSG00000214338|ENST00000525778|SOGA3 18.1463463914782 0.46027927471454505 2 VE{I|L} 3 5 35.445 0 0 3.6521 0 0 611.3266536441517 0 611.3266536441517 0 32.68110275043508 0 0 0 0.9247425010840047 0 0 0 + VE{I|L} 3.6521 + + 16 NaN NaN 108970.3 NaN 14194 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17901 75.408 NaN 377590 35 0 24225 0.261 -1 EDCQSLTR 8 79 504.7258238250018 NaN 0 504.7254943847656 PEAK HCD FTMS 0 0 0 17893 55753.89453125 0.8708194343656549 1 -0.0294952392578125 8 Carbamidomethyl (C) _EDC(Carbamidomethyl (C))QSLTR_ ENSG00000141736|ENST00000269571|ERBB2;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-4|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2 10.823927491677226 0.38822285293237185 2 G 1 -1 7.4913 0 0 0.7436 0 0 264.11072210046046 683.2796724908811 947.3903945913416 0 0 0 0 0 0.28872548999643577 0 0 0 G 0.7436 - 32 + NaN NaN 150056.1 NaN 14195 3704 17893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17903 75.412 NaN 9257300 35 0 986720 0.327 + 13549 KYPENFFLL 9 119 585.8131605635726 1169.6117681939452 2 585.8136596679688 MULTI HCD FTMS 0 0 0 17902 6312128 0.03208628522526881 -20 0.5482406616210938 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 87.366 0 0 7.4697 7.4697 89.893 0 0 0 8.068109453757657 16.478174818886373 8.068109453757657 8.068109453757657 0 2.5189301784845295 0 0.3494850021680094 1.610924374808178 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YN][VP]{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]N[YK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.4697;6.7799;6.6824;5.9926;5.9926;5.9;5.8858;5.3058;5.1127;4.8885 +;-;-;-;-;-;-;-;-;- + 8525 NaN NaN 893289.6 NaN 14196 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17904 75.417 NaN 758060 35 0 131830 0.261 + 2259 DLLADMMPN 9 75 510.23106341380117 NaN 0 510.24853515625 PEAK HCD FTMS 0 0 0 17902 16669.98046875 0.6981368930800768 -2 0.055633544921875 2 Unmodified _DLLADMMPN_ REV__tr|U7SFN4|U7SFN4_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02317PE=4SV=1 11.640296217721598 0.23883959125015683 2 {I|L}DAE 4 -1 23.36 0 0 2.2937 0 0 131.05991937762525 456.16767297916255 587.2275923567878 0 0 0 0 0 0 0 0.3807196863200844 0 {I|L}DAE 2.2937 - 62 + NaN NaN 214271.3 NaN 14197 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17905 75.42 NaN 377890 35 0 62089 0.261 + 26755 SYFDEPVEL 9 66 549.7541067285434 1097.4936605238868 2 549.7531127929688 MULTI HCD FTMS 0 0 0 17902 100560.921875 0.7380835650775487 1 -0.02947235107421875 3 Unmodified _SYFDEPVEL_ ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 58.678817012210395 0.019429721296335044 2 E[VP]E{I|L} 5 4 42.435 0 0 3.8665 0 0 512.1899483159102 0 512.1899483159102 0 24.47621246364342 0 0 0 1.1989700043360187 0 1.1237125054200234 0 + E[VP]E{I|L} 3.8665 + + 154 NaN NaN 166550.1 NaN 14198 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17906 75.424 NaN 245680 35 0 44695 0.261 + 33651 YIYVHFTDW 9 62 622.2936745900838 1242.5727962469675 2 622.2940063476562 MULTI HCD FTMS 0 0 0 17902 128632.5859375 0.5712185749436621 -7 0.20526885986328125 4 Unmodified _YIYVHFTDW_ REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF 12.531546534597751 0.2520865569484384 2 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 10 -1 + 71.387 0 0 5.7451 5.7451 88.995 0 0 0 9.515449934959719 9.515449934959719 9.515449934959719 9.515449934959719 0 2.473197507588033 2 0 0 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]YD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YY[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YY{[VA]|[{I|L}G]}E{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]Y[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]YD[{I|L}A]WWN 5.7451;4.9793;4.9382;4.8376;4.5358;4.3541 -;-;-;-;-;- 112 + NaN NaN 146980.2 NaN 14199 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17907 75.427 NaN 276860 35 0 22863 0.261 + 11607 IYTPIFNEY 9 73 580.2878254472174 1158.5610979612347 2 580.2899780273438 MULTI HCD FTMS 0 0 0 17902 59559.7109375 0.09034530159678815 8 -0.21184539794921875 5 Unmodified _IYTPIFNEY_ ENSG00000102931|ENST00000219204|ARL2BP;nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP 43.77239144664712 0.04802738721622131 2 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY 9 0 + 34.408 0 0 2.9699 2.9699 86.251 0 0 0 4.137342758552698 2.469706153019267 2.469706153019267 12.262809413564646 0 0.9247425010840047 0 0.3054621874040891 0.3054621874040891 + + [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}NEY;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}GGEY;[QA]Q[VP]H{M(Oxidation (M))|F}{M(Oxidation (M))|F}W;[MT][KS]{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}W;[MT][KS]{[NV]|[RG]}W{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}{[MG]|[TS]}{[MS]|[{M(Oxidation (M))|F}A]};[QA][AG][VP]H{M(Oxidation (M))|F}{M(Oxidation (M))|F}W;[Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[NV]|[RG]}[KP]{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[NV]|[RG]}[QP]{[CT]|[{M(Oxidation (M))|F}G]} 2.9699;1.9114;1.7522;1.3251;1.2232;0.96082;0.95743;0.549;0.27048;0.27048 +;-;-;-;-;-;-;-;-;- + 331 NaN NaN 144905.7 NaN 14200 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17908 75.43 NaN 769500 35 0 112210 0.261 -1 FPQYVMDVL 9 81 564.2756431356213 1126.5367333380425 2 564.2750854492188 MULTI HCD FTMS 0 0 0 17902 197804.578125 0.29192458598777815 -4 0.11124420166015625 6 Oxidation (M) _FPQYVM(Oxidation (M))DVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 38.175570920033316 0.07371992880350783 2 V{M(Oxidation (M))|F}DV{I|L} 5 -1 44.213 0 0 3.9247 0 0 535.2407704084 0 535.2407704084 0 25.62977812912628 0 0 0 1.4916440611282624 0 0 0 V{M(Oxidation (M))|F}DV{I|L} 3.9247 + + 659 NaN NaN 227343 NaN 14201 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17909 75.434 NaN 479690 35 0 38958 0.261 + 7404 FVLSEMALV 9 70 512.7728193436508 1023.5310857541016 2 513.274658203125 MULTI HCD FTMS 0 0 0 17902 33253.6640625 0.2729673579581418 11 -0.27300262451171875 7 Oxidation (M) _FVLSEM(Oxidation (M))ALV_ DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10 42.09456458481378 0.05572955244001856 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV{I|L} 9 5 + 57.347 0 0 5.6028 5.6028 90.414 0 0 0 13.937712079736073 32.98168367335663 13.937712079736073 16.977437731477423 0 1.579689690656103 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}AV{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]{I|L}[EC]V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[NV]|[RG]}K[WM]{I|L} 5.6028;3.9441;3.4871 -;-;- 528 NaN NaN 161486.8 NaN 14202 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17910 75.437 NaN 214980 35 0 24356 0.262 + -1 IGSSNGCQ 8 52 404.1699439410605 NaN 0 404.16998291015625 PEAK HCD FTMS 0 0 0 17902 30141.0234375 0.39214634163199436 8 -0.21184539794921875 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IGSSNGCQ_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|98|2|sense 7.289230182591677 0.38822285293237185 2 E 1 -1 4.9743 0 0 0.6169 0 0 373.1682132221617 301.10004602603755 674.2682592481992 0 0 0 0 0 0.25 0 0 0 E 0.6169 - 8 + NaN NaN 116670.1 NaN 14203 3705 17902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17912 75.442 NaN 8095300 35 0 735320 0.327 + 32071 VYQLRFQFL 9 113 607.3396435203007 1212.6647341074013 2 607.3402099609375 MULTI HCD FTMS 0 0 0 17911 3543955.75 0.5249520497567142 3 -0.0683746337890625 1 Unmodified _VYQLRFQFL_ ENSG00000068654|ENST00000263857|POLR1A 149.9946105101851 8.83195450578534E-06 2 VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 9 0 + 106.83 0 0 8.8094 8.8094 93.148 0 0 0 55.853481135844866 10.202264589233394 10.202264589233394 9.208187539523749 0 2.9291746928241125 1.5228787452803376 0 1.8996498648046138 + + VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV][AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[YV][YK]RPQ{M(Oxidation (M))|F}{I|L};{I|L}YN{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L} 8.8094;8.05;7.8099;7.4936;7.1678;7.0506;7.0506;6.8879;6.7696;6.7379 +;-;+;-;-;-;-;-;-;- + 13229 + NaN NaN 748990.6 NaN 14204 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17913 75.446 NaN 873290 35 0 92713 0.261 + 34396 YPEPFLIKL 9 94 560.3260567071405 1118.637560481081 2 560.3263549804688 MULTI HCD FTMS 0 0 0 17911 583118.625 0.34946260080027436 3 -0.0683746337890625 2 Unmodified _YPEPFLIKL_ ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP 89.40071534611396 0.0045416704840156395 2 YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L} 9 0 + 87.947 0 0 7.862 7.862 94.414 0 0 0 63.79039059593687 12.944539621753535 12.944539621753535 17.602583710382476 0 2.504432191740108 1.5228787452803376 0.3807196863200844 0.3054621874040891 + + YPEP{M(Oxidation (M))|F}{I|L}{I|L}K{I|L};YP{M(Oxidation (M))|F}[EP]{I|L}{I|L}K{I|L};YP{M(Oxidation (M))|F}{I|L}[EP]{I|L}K{I|L};[HK]C(Carbamidomethyl (C))[HA]{I|L}{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]Y{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}Y[EP]K{I|L};[HK][CG][HA]{I|L}{I|L}K{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}Y[KP]E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]{I|L}YK{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}[EP]YK{I|L} 7.862;6.2884;5.5923;2.5194;1.9077;1.7105;1.6962;1.4693;1.3706;1.284 +;-;-;-;-;-;-;-;-;- + 736 + NaN NaN 224820.1 NaN 14205 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17914 75.45 NaN 479200 35 0 64663 0.261 + 35634 YYIFIPSKF 9 53 589.318133034262 1176.621713135324 2 589.3182373046875 MULTI HCD FTMS 0 0 0 17911 252666.359375 0.009049902994294184 54 -0.9223403930664062 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 38.175570920033316 0.07371992880350783 2 YY{M(Oxidation (M))|F}{I|L}{I|L}P[KS]{M(Oxidation (M))|F} 9 2 + 44.103 0 0 3.7483 3.7483 87.293 0 0 0 7.4080374776506375 21.650378042405904 7.4080374776506375 14.030899869919434 0 1 1.6989700043360187 0 0 YY{M(Oxidation (M))|F}{I|L}{I|L}P[KS]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{I|L}YP[KS]{M(Oxidation (M))|F} 3.7483;2.5558 -;- 115 NaN NaN 160261.6 NaN 14206 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17915 75.453 NaN 437540 35 0 61586 0.261 + 15599 LPDYTSPVVL 10 66 552.30268783358 1102.5908227339598 2 552.302490234375 MULTI HCD FTMS 0 0 0 17911 165474.359375 0.1985003516279851 -7 0.2019500732421875 4 Unmodified _LPDYTSPVVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 29.081581746732265 0.240155558137004 2 [YT]VEPS[VP]V{I|L} 10 5 + 39.671 0 0 3.598 3.598 85.184 0 0 0 2.2184874961635614 28.490261968878876 2.2184874961635614 9.208187539523749 0 1.3807196863200843 0 0 0 [YT]VEPS[VP]V{I|L};[{I|L}P]{[YD]|[{M(Oxidation (M))|F}M]}TS[VP]V{I|L} 3.598;2.7628 -;+ + 279 NaN NaN 161925.3 NaN 14207 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17916 75.457 NaN 333050 35 0 30542 0.261 + 26823 SYIEHIFEI 9 96 575.7919771824853 1149.5694014317705 2 575.791259765625 MULTI HCD FTMS 0 0 0 17911 95029.9296875 0.002100842868763965 81 -1.6612930297851562 5 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 65.23502041540118 0.010630085227462206 2 {I|L}Y{M(Oxidation (M))|F}TM{I|L}{I|L} 7 6 50.156 0 0 4.363 0 0 250.09515578437657 0 250.09515578437657 0 9.507571576656403 0 0 0 0.75 0 0.5189301784845296 0 {I|L}Y{M(Oxidation (M))|F}TM{I|L}{I|L} 4.363 - 2090 NaN NaN 137743.5 NaN 14208 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17917 75.46 NaN 229840 35 0 27550 0.261 -1 MPDIDFNL 8 53 490.7232540056682 979.4319550781364 2 490.7235107421875 MULTI HCD FTMS 0 0 0 17911 137291.984375 0.39197121391479123 9 -0.2309112548828125 6 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 D{M(Oxidation (M))|F}N{I|L} 4 -1 39.68 0 0 4.0514 0 0 472.19639784980626 0 472.19639784980626 0 26.18562527100117 0 0 0 0.4247425010840047 0 0 0.3494850021680094 D{M(Oxidation (M))|F}N{I|L} 4.0514 + + 64 NaN NaN 131952.6 NaN 14209 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17918 75.463 NaN 163600 35 0 14170 0.261 + 17177 LYLWEHIFE 9 55 625.3143223101706 NaN 0 625.2572021484375 PEAK HCD FTMS 0 0 0 17911 12571.150390625 0.4557641542300535 2 -0.05561065673828125 7 Unmodified _LYLWEHIFE_ ENSG00000118600|ENST00000261234|RXYLT1;ENST00000536219.5_1_12:64173626-64178865:+|nuORF 12.531546534597751 0.23452071659215576 2 {I|L} 1 8 16.99 0 0 1.3607 0 0 859.3825070697568 273.12588792633653 1132.5083949960933 0 0 0 0 0 1 0 0 0 + {I|L} 1.3607 + + 7 + NaN NaN 107708.9 NaN 14210 3706 17911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17920 75.468 NaN 6521700 35 0 918800 0.327 + 1222 AYLLYSLHL 9 83 546.8081431998717 1091.6017334665432 2 546.8084716796875 MULTI HCD FTMS 0 0 0 17919 3103558.75 0.7938564450279846 1 -0.02947998046875 1 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 179.2298980043202 1.129651853483471E-12 2 AY{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 106.49 0 0 9.755 9.755 90.32 0 0 0 2.0511205220870323 2.0511205220870323 2.0511205220870323 2.0511205220870323 0 3.1989700043360187 1.6989700043360187 1.3684151806525389 0 + + AY{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}S{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YSH{I|L}{I|L};[Y{I|L}]A{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}SH{I|L}{I|L};{I|L}{I|L}YAYS{I|L}H{I|L};{I|L}{I|L}AYYS{I|L}H{I|L};[Y{I|L}]AY{I|L}S{I|L}H{I|L};[Y{I|L}]{I|L}AYS{I|L}H{I|L} 9.755;9.5671;8.5575;8.3922;7.4801;7.3826;6.7995;6.6656;6.4706;6.3818 +;+;-;-;-;-;-;-;-;- + 1281 + NaN NaN 761761.7 NaN 14211 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17921 75.472 NaN 724290 35 0 183450 0.261 + 11263 IYLPYLHEW 9 68 617.3186188944503 1232.6226848557005 2 617.3184814453125 MULTI HCD FTMS 0 0 0 17919 295782.53125 0.8773898224704632 1 -0.02947998046875 2 Unmodified _IYLPYLHEW_ ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF 57.47134341890925 0.0211188941628804 2 [Y{I|L}]{I|L}PY{I|L}HEW 9 0 + 72.285 0 0 5.8643 5.8643 93.429 0 0 0 14.862490292415558 47.452359395051715 14.862490292415558 72.28524061761696 0 1.8182503180159344 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}PY{I|L}HEW 5.8643 + + 92 NaN NaN 215715.1 NaN 14212 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17922 75.476 NaN 808310 35 0 50651 0.261 + -1 PFMKKLMFF 9 99 602.8161775792993 NaN 0 602.8050537109375 PEAK HCD FTMS 0 0 0 17919 36544.796875 0.5490785332595239 -1 0.02613067626953125 3 Oxidation (M) _PFM(Oxidation (M))KKLMFF_ REV__tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1 18.13498045792455 0.19991664011725976 2 QDK{M(Oxidation (M))|F}P 5 -1 16.208 0 0 1.3466 0 0 276.1723792611472 309.12461267642817 585.2969919375754 0 0 0 0 0 0 0 0.3054621874040891 0.28872548999643577 QDK{M(Oxidation (M))|F}P 1.3466 - 482 + NaN NaN 222989.1 NaN 14213 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17923 75.479 NaN 261820 35 0 33442 0.264 + 25754 SLAVVMHL 8 63 435.25110079159066 NaN 0 435.2510681152344 PEAK HCD FTMS 0 0 0 17919 146091.921875 0.48701355591850237 -10 0.29027557373046875 4 Unmodified _SLAVVMHL_ ENST00000378509.8_1_7:133979072-133979261:-|nuORF 5.230669730166228 0.38822285293237185 2 Q 1 8 10.529 0 0 1.2123 0 0 326.19345168064984 411.22324548892817 737.416697169578 0 0 0 0 0 0.6549471895720984 0 0 0 Q 1.2123 - 10 + NaN NaN 140025.9 NaN 14214 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17924 75.483 NaN 781990 35 0 43532 0.261 + 27143 SYMWTINNF 9 107 596.2605218647798 1190.5064907963595 2 596.2601928710938 MULTI HCD FTMS 0 0 0 17919 245911.390625 0.25796641936850984 -8 0.22808074951171875 5 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 92.65332237495696 0.004456439685314431 2 GN{I|L}T[CS]NN{M(Oxidation (M))|F} 9 6 63.365 0 0 5.3225 0 0 222.09985549140782 0 222.09985549140782 0 30.85064312620632 0 0 0 0.5 0 1.0189301784845295 1.079689690656103 GN{I|L}T[CS]NN{M(Oxidation (M))|F} 5.3225 - 2539 NaN NaN 198155.3 NaN 14215 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17925 75.486 NaN 459600 35 0 21446 0.261 + -1 YVARCDREDC 10 92 643.766383719623 1285.518214506046 2 643.7666625976562 MULTI HCD FTMS 0 0 0 17919 90650.0078125 0.6864742481660516 1 -0.02947998046875 6 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 13.90604991867851 0.3810395177745597 2 [YV]AS{M(Oxidation (M))|F}SWS{M(Oxidation (M))|F}M 10 -1 56.601 0 0 4.4029 0 0 0 76.92566014497098 76.92566014497098 38.64184384430367 0 0 0 0 1.805462187404089 2 0.6307196863200843 0 [YV]AS{M(Oxidation (M))|F}SWS{M(Oxidation (M))|F}M 4.4029 - 1225 NaN NaN 170259.7 NaN 14216 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17926 75.489 NaN 226610 35 0 39986 0.264 + 29113 TYGPSFPAF 9 46 493.73446088857963 985.4543688439593 2 493.7348327636719 MULTI HCD FTMS 0 0 0 17919 103254.3125 0.41634685385531606 4 -0.09424591064453125 7 Unmodified _TYGPSFPAF_ ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant 50.855029805455786 0.030374663808198754 2 WE[DG]PA{M(Oxidation (M))|F} 7 5 44.028 0 0 4.4678 0 0 165.0799591723043 0 165.0799591723043 0 27.653178901854428 0 0 0 0.805462187404089 0 0.4247425010840047 0 WE[DG]PA{M(Oxidation (M))|F} 4.4678 - 138 + NaN NaN 140284.4 NaN 14217 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17927 75.493 NaN 920560 35 0 148610 0.261 + 22320 QPINFSVSL 9 79 502.77434944649116 1003.5341459597823 2 502.7745056152344 MULTI HCD FTMS 0 0 0 17919 244391.8125 0.07641057505886531 -5 0.14068603515625 8 Unmodified _QPINFSVSL_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 63.960520009940105 0.0120409805053046 2 {[TV]|[{I|L}S]}[VS]HYVS{I|L} 9 6 + 54.56 0 0 5.4368 5.4368 90.669 0 0 0 1.3849870287030086 40.13682493045401 1.3849870287030086 21.7609125905568 0 0.8494850021680094 1.5228787452803376 0.8494850021680094 0 {[TV]|[{I|L}S]}[VS]HYVS{I|L};[VS]{[TV]|[{I|L}S]}HYVS{I|L};[HV][VS]TYVS{I|L} 5.4368;3.2684;1.2229 -;-;- 318 NaN NaN 243807.5 NaN 14218 3707 17919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17929 75.498 NaN 1165600 35 0 168790 0.327 + 15534 LPDPIIIHL 9 86 515.8184081556342 1029.6222633780683 2 515.8185424804688 MULTI HCD FTMS 0 0 0 17928 510712.84375 0.7594898760311183 2 -0.045440673828125 1 Unmodified _LPDPIIIHL_ ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B 104.79918948944588 0.003791450360204016 2 {I|L}PDP{I|L}{I|L}{I|L}H{I|L} 9 0 + 107.46 0 0 10.437 10.437 97.225 0 0 0 81.8789172985675 10.642492736872597 10.642492736872597 19.348535256746743 0 2.9876954943324545 1.5228787452803376 0.7742275032520141 0 + + {I|L}PDP{I|L}{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}{I|L}H{I|L};[DP]{I|L}P{I|L}{I|L}{I|L}H{I|L};[DP]{I|L}{I|L}P{I|L}{I|L}H{I|L};[{I|L}P]DP{I|L}{I|L}H{I|L}{I|L};[{I|L}P]D{I|L}{I|L}P{I|L}H{I|L};[{I|L}P]D{I|L}P{I|L}H{I|L}{I|L};[DP]{I|L}P{I|L}{I|L}H{I|L}{I|L};[{I|L}P]{I|L}DP{I|L}{I|L}H{I|L} 10.437;8.5579;8.2873;8.2433;7.9727;7.6089;7.4152;7.3383;7.2943;7.1699 +;+;-;-;-;-;-;-;-;- + 1088 + NaN NaN 275470.7 NaN 14219 3708 17928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17930 75.502 NaN 723620 35 0 179960 0.261 + 11264 IYLPYLHEW 9 60 617.3186188944503 1232.6226848557005 2 617.318603515625 MULTI HCD FTMS 0 0 0 17928 265000 0.7860785488989988 2 -0.045440673828125 2 Unmodified _IYLPYLHEW_ ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF 48.345845343767074 0.03388484103555672 2 [Y{I|L}]{I|L}PY{I|L} 6 3 49.614 0 0 4.0251 0 0 0 467.1678308528909 467.1678308528909 23.416375079047498 0 0 0 0 1.5 1.6989700043360187 0 0 + [Y{I|L}]{I|L}PY{I|L} 4.0251 + + 105 + NaN NaN 215967.9 NaN 14220 3708 17928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17931 75.505 NaN 839320 35 0 60077 0.261 + 27144 SYMWTINNF 9 106 596.2605218647798 1190.5064907963595 2 596.2606201171875 MULTI HCD FTMS 0 0 0 17928 411008.65625 0.4311570566650127 -7 0.19632720947265625 3 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 99.75527289724121 0.004270341300239591 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}N{M(Oxidation (M))|F}N 9 2 + 61.057 0 0 5.1287 5.1287 85.375 0 0 0 1.961802823908286 4.847774111832507 1.961802823908286 6.865882014714288 0 2.221848749616356 0 0 1.3388903526330402 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}N{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NG{[CT]|[{M(Oxidation (M))|F}G]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GG{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}N{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}N{M(Oxidation (M))|F}GG;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}NG{[CT]|[{M(Oxidation (M))|F}G]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[DA]|[EG]}T{I|L}GG{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}D]|MM}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}N{M(Oxidation (M))|F}N;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GG{M(Oxidation (M))|F}GG;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GGG{[CT]|[{M(Oxidation (M))|F}G]} 5.1287;4.5519;4.3552;4.3552;3.948;3.7821;3.5854;3.482;3.1782;2.9 -;-;-;-;-;-;-;-;-;- 2794 + NaN NaN 221532.1 NaN 14221 3708 17928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17933 75.51 NaN 904570 35 0 150920 0.327 + 28521 TPQFPDMIL 9 78 539.26788511357 1076.5212172939398 2 539.2685546875 MULTI HCD FTMS 0 0 0 17932 506817.34375 0.026018001281655864 -29 0.7838897705078125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 40.23920728925047 0.06424668180817725 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 53.075 0 0 4.9302 4.9302 89.104 0 0 0 2.632192780232785 34.97601586693804 2.632192780232785 15.688812894078119 0 1.5 0 0.805462187404089 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[QT]PD{M(Oxidation (M))|F}{I|L}{I|L} 4.9302;3.4729 -;- 430 NaN NaN 223917.7 NaN 14222 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17934 75.515 NaN 576880 35 0 122270 0.261 + 4514 EYKIAFPYL 9 72 572.3080652985798 1142.6015776639595 2 572.3082275390625 MULTI HCD FTMS 0 0 0 17932 286569.1875 0.09661672355365927 12 -0.2416839599609375 2 Unmodified _EYKIAFPYL_ ENSG00000174231|ENST00000304992|PRPF8 48.345845343767074 0.03388484103555672 2 C(Carbamidomethyl (C))K{I|L}A{M(Oxidation (M))|F}P[Y{I|L}] 8 2 36.666 0 0 3.209 0 0 132.0777504760852 0 132.0777504760852 0 1.2595562582525588 0 0 0 1.1989700043360187 0 0 0.5 C(Carbamidomethyl (C))K{I|L}A{M(Oxidation (M))|F}P[Y{I|L}] 3.209 - 572 + NaN NaN 187386.4 NaN 14223 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17935 75.518 NaN 471560 35 0 93880 0.261 + 8317 GYAHWIGLF 9 75 532.271644107701 1062.528735282202 2 532.2718505859375 MULTI HCD FTMS 0 0 0 17932 221965.71875 0.04057731771572186 16 -0.28855133056640625 3 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 93.76273176245871 0.004427368897683185 2 [YG]AHW{I|L}G{I|L}{M(Oxidation (M))|F} 9 0 + 71.264 0 0 6.707 6.707 88.409 0 0 0 17.06317873474802 8.010299956639813 8.010299956639813 8.010299956639813 0 2.2302046884880937 1.5228787452803376 0 0 + + [YG]AHW{I|L}G{I|L}{M(Oxidation (M))|F};[YG]AHW{I|L}G{M(Oxidation (M))|F}{I|L};[YQ]HW{I|L}G{I|L}{M(Oxidation (M))|F};[YQ]HW{I|L}G{M(Oxidation (M))|F}{I|L};{[VA]|[{I|L}G]}{[MS]|[{M(Oxidation (M))|F}A]}VW[HS]{M(Oxidation (M))|F} 6.707;5.9531;5.1011;4.6533;1.6669 +;-;-;-;- + 727 NaN NaN 184845.6 NaN 14224 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17936 75.522 NaN 448140 35 0 52639 0.261 + 21912 QDPELLSVI 9 58 507.2793843102838 1012.5442156873676 2 507.2794189453125 MULTI HCD FTMS 0 0 0 17932 188508.171875 0.09413505804004949 -8 0.2090911865234375 4 Unmodified _QDPELLSVI_ ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1 29.84058131909904 0.11198220037953927 2 {I|L}SV{I|L} 4 5 51.23 0 0 5.0595 0 0 582.2652455060562 0 582.2652455060562 0 44.24024714504206 0 0 0 1.305462187404089 0 0.9247425010840047 0 + {I|L}SV{I|L} 5.0595 + + 72 NaN NaN 166854.5 NaN 14225 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17937 75.525 NaN 151250 35 0 42331 0.261 -1 IPMPDFDL 8 45 482.2282648291911 962.4419767251823 2 482.2286682128906 MULTI HCD FTMS 0 0 0 17932 69011.6171875 0.22628688736580824 -4 0.09784698486328125 5 Oxidation (M) _IPM(Oxidation (M))PDFDL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 23.1484247019978 0.4234759064137959 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}EP{I|L} 8 -1 + 42.062 0 0 4.3703 4.3703 84.714 0 0 0 9.014093602655464 10.133418048066787 9.014093602655464 8.010299956639813 0 0.5 1.5228787452803376 0.5 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[ET]|[MV]}EP{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[ET]|[MV]}{M(Oxidation (M))|F}EP{I|L};[YT]{[HG]|PP}{M(Oxidation (M))|F}EP{I|L} 4.3703;3.538;1.6429 -;-;- 85 NaN NaN 112716.6 NaN 14226 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17938 75.528 NaN 354400 35 0 46878 0.261 + 34676 YPTPSDFGL 9 52 498.73742648295297 NaN 0 498.7375183105469 PEAK HCD FTMS 0 0 0 17932 69073 0.1920767439372719 -4 0.09784698486328125 6 Unmodified _YPTPSDFGL_ ENSG00000188483|ENST00000372491|IER5L 46.020951573049366 0.05896589607441476 2 D{M(Oxidation (M))|F}[PS]D{M(Oxidation (M))|F} 6 5 35.138 0 0 3.5298 0 0 99.0870054159645 185.09310327701408 284.1801086929786 0 0 0 0 0 1.9247425010840047 0 0.3494850021680094 0 D{M(Oxidation (M))|F}[PS]D{M(Oxidation (M))|F} 3.5298 - 41 + NaN NaN 141431 NaN 14227 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17939 75.531 NaN 554140 35 0 84825 0.262 -1 YQMYLCFLL 9 64 403.86121970501256 1208.5618297152378 3 403.8612365722656 MULTI HCD FTMS 0 0 0 17932 61999.703125 0.03647028488428864 -36 0.9772491455078125 7 Oxidation (M) _YQM(Oxidation (M))YLCFLL_ ENSG00000163393|ENST00000369503|SLC22A15;nc|ENSG00000163393|Q8IZD6-2|SLC22A15 5.296884461304476 0.3108627248283497 2 K 1 -1 7.7866 0 0 0.64429 0 0 114.08768456801143 963.3553322491914 1077.4430168172028 0 0 0 0 0 0 0 0 0.3807196863200844 K 0.64429 - 17 + NaN NaN 184827.2 NaN 14228 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17940 75.535 NaN 209150 35 0 25014 0.261 + -1 YAELVMLAV 9 60 512.7728193436508 1023.5310857541016 2 512.7725219726562 MULTI HCD FTMS 0 0 0 17932 37219.59375 0.15076359841639786 13 -0.2574920654296875 8 Oxidation (M) _YAELVM(Oxidation (M))LAV_ REV__ENSG00000152223|ENST00000282041|EPG5;REV__ENST00000587974.1_1_18:43487913-43547205:-|nuORF;REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 12.531546534597751 0.2520865569484384 2 VV[DP]{M(Oxidation (M))|F}AV{I|L} 8 -1 34.474 0 0 3.3682 0 0 165.07884413886876 0 165.07884413886876 0 28.90092514408778 0 0 0 0.3494850021680094 0 0 0 VV[DP]{M(Oxidation (M))|F}AV{I|L} 3.3682 - 147 NaN NaN 114640.8 NaN 14229 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17941 75.538 NaN 409680 35 0 41686 0.261 + 2253 DLHFPPGLSF 10 78 565.2877769914294 1128.5610010496587 2 566.7750854492188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _DLHFPPGLSF_ ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL;nc|ENSG00000005844|P20701-3|ITGAL 19.256988751693697 0.33098864134661865 2 S{I|L}E[RN]{I|L}S{M(Oxidation (M))|F} 8 6 35.984 0 0 3.1885 0 0 164.07743278969616 0 164.07743278969616 0 -3.686493422880382 -3.686493422880382 0 0 0.6989700043360187 0 0.6109243748081782 0.3807196863200844 S{I|L}E[RN]{I|L}S{M(Oxidation (M))|F} 3.1885 - 362 + NaN NaN 163140.8 NaN 14230 3709 17932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17943 75.543 NaN 613700 35 0 156400 0.327 + 11265 IYLPYLHEW 9 64 617.3186188944503 1232.6226848557005 2 617.3185424804688 MULTI HCD FTMS 0 0 0 17942 317535 0.9419149133005418 4 -0.10727691650390625 1 Unmodified _IYLPYLHEW_ ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF 46.020951573049366 0.037705236580089195 2 {I|L}Y{I|L}PY{I|L} 6 3 60.583 0 0 4.915 0 0 0 467.16782556705317 467.16782556705317 45.89062518744797 0 0 0 0 1.5 1.6989700043360187 0 0 + {I|L}Y{I|L}PY{I|L} 4.915 + + 98 + NaN NaN 188331.5 NaN 14231 3710 17942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17944 75.547 NaN 346300 35 0 46157 0.262 + 10161 IFSKIVSLF 9 70 527.3210316197388 1052.6275103062776 2 527.3209228515625 MULTI HCD FTMS 0 0 0 17942 46574.421875 0.2694554433875294 -1 0.03267669677734375 2 Unmodified _IFSKIVSLF_ ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B 63.960520009940105 0.0120409805053046 2 {I|L}{M(Oxidation (M))|F}SK[{I|L}V]S{I|L}{M(Oxidation (M))|F} 9 0 + 59.809 0 0 5.6819 5.6819 92.877 0 0 0 46.46767826554118 15.824412556698135 15.824412556698135 59.80889708950329 0 1.9247425010840047 0 1.2302046884880937 0 + + {I|L}{M(Oxidation (M))|F}SK[{I|L}V]S{I|L}{M(Oxidation (M))|F} 5.6819 + + 45 + NaN NaN 140747 NaN 14232 3710 17942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17945 75.551 NaN 236510 35 0 24196 0.261 + -1 YRDRIRLKM 9 72 633.8577270507812 NaN 0 633.8577270507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YRDRIRLKM(Oxidation (M))_ REV__MAB21L1|p.V158M|1|0.35|ENSG00000180660|chr13:35475667-35475667|C/T|missense_variant 10.073929032068715 0.24642998803896465 2 R{I|L} 2 -1 9.8206 0 0 0.7759 0 0 703.3773350605153 290.11435877017817 993.4916938306935 0 0 0 0 0 0.4247425010840047 0 0 0 R{I|L} 0.7759 + + 20 + NaN NaN 122190.3 NaN 14233 3710 17942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17946 75.554 NaN 355920 35 0 29364 0.261 + 2254 DLHFPPGLSF 10 89 565.2877769914294 1128.5610010496587 2 566.7747192382812 MULTI HCD FTMS 0 0 0 17942 28869.615234375 0.1751735755414352 -2 0.045440673828125 4 Unmodified _DLHFPPGLSF_ ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL;nc|ENSG00000005844|P20701-3|ITGAL 13.90604991867851 0.3810395177745597 2 {I|L}S{M(Oxidation (M))|F} 3 7 32.505 0 0 2.8802 0 0 763.365190126602 0 763.365190126602 0 -2.2664203951736397 -2.2664203951736397 0 0 0.6307196863200843 0 0 0 + {I|L}S{M(Oxidation (M))|F} 2.8802 + + 227 + NaN NaN 149186.3 NaN 14234 3710 17942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17947 75.557 NaN 168340 35 0 29060 0.261 + -1 PSHCSPCDF 9 51 525.1930662540987 NaN 0 524.8150024414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _PSHC(Carbamidomethyl (C))SPCDF_ REV__ENST00000531006.1_1_8:144698411-144698636:-|nuORF 2.0597508629832335 0.2852655770354268 2 Y 1 -1 5.4846 0 0 0.52315 0 0 637.1525987173785 245.12923608951408 882.2818348068926 0 0 0 0 0 0 0 0 0 Y 0.52315 - 1 + NaN NaN 121054 NaN 14235 3710 17942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17949 75.562 NaN 34178000 35 0 4215200 0.327 + 13550 KYPENFFLL 9 91 585.8131605635726 1169.6117681939452 2 585.8140258789062 MULTI HCD FTMS 0 0 0 17948 51494280 0.26175960873256293 -14 0.384521484375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 125.52916310638031 0.0008761121089336018 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.694 0 0 8.0962 8.0962 91.011 0 0 0 8.310384486277798 16.478174818886373 8.310384486277798 8.310384486277798 0 2.6307196863200843 0 0.5189301784845296 2.004432191740108 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 8.0962;7.3856;7.3089;6.5984;6.3846;6.3388;6.2778;5.8627;5.6283;5.5515 +;-;-;-;-;-;-;-;-;- + 6223 NaN NaN 561741.7 NaN 14236 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17950 75.567 NaN 673900 35 0 103580 0.261 + 18373 MPMNVADLI 9 67 510.2484562590706 1018.4823595849413 2 510.24884033203125 MULTI HCD FTMS 0 0 0 17948 496986.71875 0.8760719967097946 1 -0.029327392578125 2 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 43.85829265575387 0.04763305254408404 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L} 9 4 + 70.072 0 0 6.88 6.88 95.118 0 0 0 15.228787452803374 45.63486257521106 15.228787452803374 70.07183756753818 0 1.5 1.2218487496163564 0 0.6989700043360187 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L} 6.88 - 106 NaN NaN 198481.9 NaN 14237 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17951 75.57 NaN 458010 35 0 65223 0.261 + 29014 TYEKFFGLL 9 83 559.3000410429497 1116.5855291526993 2 559.300048828125 MULTI HCD FTMS 0 0 0 17948 350383.15625 0.787746360850395 -2 0.052001953125 3 Unmodified _TYEKFFGLL_ ENSG00000163510|ENST00000410053|CWC22 65.47368725323818 0.010552856507075443 2 [YT]EK{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F} 9 4 + 85.346 0 0 7.6435 7.6435 88.682 0 0 0 28.89506772603255 53.30198135264581 28.89506772603255 4.388793896675267 0 2.7302046884880937 2 0.3252574989159953 0 [YT]EK{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F};[YT]EK{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L};[YT]EK{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};[YT]EK{M(Oxidation (M))|F}VA{M(Oxidation (M))|F}{I|L};[YT][VG]T{M(Oxidation (M))|F}V{I|L}A{M(Oxidation (M))|F};[YT][VG]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{I|L}{I|L};[YT][VG]{I|L}S{M(Oxidation (M))|F}{I|L}A{M(Oxidation (M))|F};[YT][VG]T{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};TY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[SG]V{I|L}A{M(Oxidation (M))|F};TY{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[SG]{M(Oxidation (M))|F}G{I|L}{I|L} 7.6435;7.2504;6.6107;6.1846;5.5164;5.1234;4.8486;4.4836;4.1908;4.15 -;+;-;-;-;-;-;-;-;- + 818 NaN NaN 157019.8 NaN 14238 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17952 75.573 NaN 438760 35 0 88041 0.263 -1 0 54 431.3051828630078 860.5958127928157 2 431.30548095703125 MULTI HCD FTMS 0 0 0 17948 296580.6875 1 0 0 4 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.81219 0 0 190.13271856944738 554.3565078137748 744.4892263832221 0 0 0 0 0 0 0 0 0 {I|L} 0.81219 - 9 + NaN NaN 164798.8 NaN 14239 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17953 75.577 NaN 238860 35 0 37437 0.261 + 15095 LMEMEMLSLF 10 66 622.2936745900838 1242.5727962469675 2 622.2930908203125 MULTI HCD FTMS 0 0 0 17948 139088.28125 0.6176491689717826 -1 0.01932525634765625 5 Unmodified _LMEMEMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 18.1463463914782 0.3413772152514074 2 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 10 7 + 64.442 0 0 5.1862 5.1862 88.32 0 0 0 35.356916955563605 5.224199400002156 5.224199400002156 10.779550148593486 0 2.079689690656103 2 0 0 {I|L}YYD[{I|L}A]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};{I|L}YY[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}H[{M(Oxidation (M))|F}E]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[YG][W{I|L}]HH{M(Oxidation (M))|F} 5.1862;4.3187;3.635;1.9833 -;-;-;- 84 + NaN NaN 118539.7 NaN 14240 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17954 75.58 NaN 297380 35 0 75133 0.261 -1 DYMYLRQLF 9 57 632.8053724676024 NaN 0 632.8054809570312 PEAK HCD FTMS 0 0 0 17948 35620.51953125 0.16344453428651645 -4 0.09424591064453125 6 Oxidation (M) _DYM(Oxidation (M))YLRQLF_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 12.240655878213236 0.2359303321180293 2 {I|L}QR 3 -1 20.674 0 0 1.6361 0 0 165.07998225382636 698.2492769830686 863.329259236895 0 0 0 0 0 0.3054621874040891 0 0 0.3807196863200844 {I|L}QR 1.6361 - 24 + NaN NaN 143517 NaN 14241 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17955 75.583 NaN 358730 35 0 31761 0.262 + 27162 SYNLSCELE 9 65 529.2300416708293 1056.4455304084586 2 529.7267456054688 MULTI HCD FTMS 0 0 0 17948 135831.140625 0.36770392712441696 -2 0.052001953125 7 Unmodified _SYNLSCELE_ ENSG00000160271|ENST00000372050|RALGDS;nc|ENSG00000160271|Q12967-2|RALGDS;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS 7.289230182591677 0.29575926068275815 2 SN 2 7 19.253 0 0 1.8224 0 0 0 852.3222636305385 852.3222636305385 3.0546218740408904 0 0 0 0 0 0 0 0.3054621874040891 SN 1.8224 - 64 + NaN NaN 138800.9 NaN 14242 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17956 75.587 NaN 148930 35 0 16217 0.261 + -1 QYCCDHAHCC 10 45 648.7051391601562 NaN 0 648.7051391601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C) _QYC(Carbamidomethyl (C))C(Carbamidomethyl (C))DHAHCC_ REV__ENSG00000158786|ENST00000375102|PLA2G2F;REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F 0.4007161486938917 0.3398413315442166 2 S 1 -1 5.4846 0 0 0.4237 0 0 839.2248737775407 365.14838586978755 1204.3732596473283 0 0 0 0 0 0 0 0 0 S 0.4237 - 8 + NaN NaN 115466.2 NaN 14243 3711 17948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17958 75.592 NaN 2516400 35 0 500390 0.326 + 32072 VYQLRFQFL 9 111 607.3396435203007 1212.6647341074013 2 607.3402709960938 MULTI HCD FTMS 0 0 0 17957 1303762.125 0.19312109072296382 9 -0.1603546142578125 1 Unmodified _VYQLRFQFL_ ENSG00000068654|ENST00000263857|POLR1A 136.33342141710068 0.00022087650154924235 2 VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L} 9 0 + 98.119 0 0 8.0912 8.0912 92.179 0 0 0 69.41380066693824 10.202264589233394 10.202264589233394 9.208187539523749 0 2.841129063296272 1.3979400086720375 0 1.4916440611282626 + + VYQ{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VY[AG]{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[Y{I|L}]GG{I|L}R{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L};[Y{I|L}]N{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};VYQ{I|L}R{M(Oxidation (M))|F}[{I|L}A]{[CT]|[{M(Oxidation (M))|F}G]};VY[AG]{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L};[YV]Q{I|L}R{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L} 8.0912;7.3319;6.9348;6.8481;6.7265;6.1754;6.1754;6.1034;6.0923;5.9672 +;-;-;-;+;-;-;-;-;- + 4297 + NaN NaN 481654.2 NaN 14244 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17959 75.596 NaN 814080 35 0 144010 0.261 + 15600 LPDYTSPVVL 10 75 552.30268783358 1102.5908227339598 2 552.302978515625 MULTI HCD FTMS 0 0 0 17957 549121.625 0.6587173750708504 -1 0.029327392578125 2 Unmodified _LPDYTSPVVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 58.678817012210395 0.04622659334010173 2 TS[VP]V{I|L} 6 4 50.45 0 0 4.5756 0 0 488.22578627754064 0 488.22578627754064 0 34.41962823435958 0 0 0 1.8494850021680094 0 0.6549471895720984 0 + TS[VP]V{I|L} 4.5756 + + 233 NaN NaN 216747.3 NaN 14245 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17960 75.599 NaN 535520 35 0 180460 0.263 -1 0 49 413.1935129102702 824.3724728873405 2 413.1933898925781 MULTI HCD FTMS 0 0 0 17957 362564 0.8216598905855531 -14 0.3844451904296875 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 169216.4 NaN 14246 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17961 75.603 NaN 498210 35 0 60104 0.261 + 35635 YYIFIPSKF 9 56 589.318133034262 1176.621713135324 2 589.3173828125 MULTI HCD FTMS 0 0 0 17957 305378.9375 0.010937941116149534 60 -1.0995559692382812 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 43.77239144664712 0.04802738721622131 2 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F} 9 2 + 61.749 0 0 5.248 5.248 89.697 0 0 0 24.13734275855269 41.29161586377087 24.13734275855269 16.18562527100117 0 1.6677353201839438 1.6989700043360187 0 0 YY{I|L}{I|L}{M(Oxidation (M))|F}PSK{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}{I|L}{I|L}PSK{M(Oxidation (M))|F};[RH]SP{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}K{M(Oxidation (M))|F} 5.248;3.8724;0.30145 -;-;- 196 NaN NaN 183085.3 NaN 14247 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17962 75.606 NaN 496220 35 0 29760 0.261 + 10837 ITYDNGFLFI 10 98 601.8084615813646 1201.602370229529 2 601.80859375 MULTI HCD FTMS 0 0 0 17957 285932.34375 0.1773918828353372 -13 0.351654052734375 5 Unmodified _ITYDNGFLFI_ C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5 18.1463463914782 0.3413772152514074 2 [YT]DV{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F}{I|L} 9 3 41.064 0 0 3.4174 0 0 0 128.07266997114962 128.07266997114962 22.876524396763507 0 0 0 0 1.1861818737241734 1.2218487496163564 0.23965182871044374 0.3494850021680094 [YT]DV{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F}{I|L} 3.4174 - 1485 NaN NaN 187058.8 NaN 14248 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17963 75.609 NaN 360160 35 0 51089 0.264 + 5348 FFTHCFGHDI 10 56 408.51501770793027 1222.523223723991 3 408.5149230957031 MULTI HCD FTMS 0 0 0 17957 224686.3125 0.24191540681571158 -4 0.09409332275390625 6 Unmodified _FFTHCFGHDI_ ENSG00000205409|ENST00000329322|OR52E6 4.3292370932331545 0.45238836448149167 2 {I|L} 1 9 13.099 0 0 1.0715 0 0 1091.4287851027002 0 1091.4287851027002 0 5.651668842475031 0 0 0 0 0 0 0 + {I|L} 1.0715 + + 23 + NaN NaN 155857.2 NaN 14249 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17964 75.613 NaN 483690 35 0 81115 0.261 + -1 YLEGPVEGHVC 11 57 630.2901413657082 1258.5657297982164 2 630.791015625 MULTI HCD FTMS 0 0 0 17957 151362.109375 0.49043792424620136 -10 0.26425933837890625 7 Carbamidomethyl (C) _YLEGPVEGHVC(Carbamidomethyl (C))_ REV__ENST00000366541.7_1_1:243419456-243433497:+|nuORF;REV__ENST00000490065.5_1_1:243419456-243433436:+|nuORF 9.38312468134398 0.3753269387758208 2 {I|L}YYD 4 -1 62.423 0 0 4.9598 0 0 0 701.3051163665766 701.3051163665766 37.95880017344075 0 0 0 0 1.3494850021680094 2 0 0 {I|L}YYD 4.9598 - 163 + NaN NaN 176534.8 NaN 14250 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17965 75.616 NaN 590180 35 0 112230 0.261 + 20035 NYIHRPDVYA 10 85 624.3135549658433 1246.6125569984865 2 624.313720703125 MULTI HCD FTMS 0 0 0 17957 331314.78125 0.6024178939951816 -1 0.029327392578125 8 Unmodified _NYIHRPDVYA_ tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1 29.081581746732265 0.240155558137004 2 [YN]{I|L}PR{M(Oxidation (M))|F}[YQ]{M(Oxidation (M))|F} 9 5 + 52.712 0 0 4.2284 4.2284 87.908 0 0 0 9.523941263431723 41.75230535770305 9.523941263431723 14.50781977329818 0 1 1.6989700043360187 0 0.7059771852360797 [YN]{I|L}PR{M(Oxidation (M))|F}[YQ]{M(Oxidation (M))|F};[YN]{I|L}AA[{I|L}P]NWW;[Y{I|L}]NPR{M(Oxidation (M))|F}[YQ]{M(Oxidation (M))|F};[YN][YN][RK]{I|L}[YN];[Y{I|L}]GGPR{M(Oxidation (M))|F}[YQ]{M(Oxidation (M))|F};[Y{I|L}]NAA[{I|L}P]NWW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[RE]|[WV]}TP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[WR][C(Carbamidomethyl (C))R]TP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]QQ[{I|L}P]NWW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}[KA]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.2284;3.0646;2.8009;2.135;1.7569;1.6371;1.4705;1.2657;1.2088;1.0729 -;-;-;-;-;-;-;-;-;- 223 NaN NaN 199618.1 NaN 14251 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17966 75.619 NaN 272050 35 0 20447 0.261 + 29530 TYVYFTNEL 9 75 575.27783203125 NaN 0 575.27783203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _TYVYFTNEL_ ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10 37.07464296494664 0.08765712315935065 2 Y{M(Oxidation (M))|F}TN 4 5 34.725 0 0 3.0234 0 0 363.18119706855606 257.11374841861567 620.2949454871717 0 0 0 0 0 1.7302046884880937 0 0 0 + Y{M(Oxidation (M))|F}TN 3.0234 + + 537 + NaN NaN 129106.8 NaN 14252 3712 17957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17968 75.624 NaN 2524600 35 0 435610 0.327 + 26074 SPFRFEISF 9 117 565.2877769914294 1128.5610010496587 2 565.2876586914062 MULTI HCD FTMS 0 0 0 17967 2507885.75 0.9463417160526658 1 -0.0259552001953125 1 Unmodified _SPFRFEISF_ ENSG00000105011|ENST00000263382|ASF1B 117.83759599426817 0.001662893820975323 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F} 9 2 + 100.93 0 0 8.9428 8.9428 90.054 0 0 0 3.123920711071051 3.123920711071051 3.123920711071051 3.123920711071051 0 2.6307196863200843 1.5228787452803376 1.1307196863200843 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}R{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RP{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P[VG]{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}R{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}SPR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]P{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}RP{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}R{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F} 8.9428;8.666;8.228;8.1269;8.12;7.6228;7.5685;7.4121;7.4052;7.386 -;+;-;-;-;-;-;-;-;+ + 9315 NaN NaN 476097.5 NaN 14253 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17969 75.629 NaN 1307600 35 0 172670 0.261 + 1223 AYLLYSLHL 9 70 546.8081431998717 1091.6017334665432 2 546.8084106445312 MULTI HCD FTMS 0 0 0 17967 1289457.125 0.32982905487724556 7 -0.11840057373046875 2 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 153.26226096763125 5.377622955406631E-06 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 104.43 0 0 9.5671 9.5671 95.294 0 0 0 11.805234507957891 11.805234507957891 11.805234507957891 11.989700043360187 0 2.774227503252014 1.6989700043360187 1.110924374808178 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Y{I|L}S{I|L}H{I|L};{I|L}{I|L}YAYS{I|L}H{I|L};{I|L}{I|L}Y[HS]{I|L}{I|L}S{M(Oxidation (M))|F} 9.5671;8.4688;6.5656;0.50809 +;-;-;- + 406 NaN NaN 285490.9 NaN 14254 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17970 75.632 NaN 1763800 35 0 800230 0.261 + 17294 LYPQFMFHL 9 70 606.2992549835044 1210.5839570338087 2 606.2998657226562 MULTI HCD FTMS 0 0 0 17967 1375337.125 0.08774406328834665 25 -0.34734344482421875 3 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 85.35673624503755 0.00464763827098139 2 {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 9 0 + 81.679 0 0 6.7471 6.7471 92.273 0 0 0 76.19456889533673 6.395067726032551 6.395067726032551 16.510234424404686 0 1.7544321917401078 2 0 0.7302046884880937 + + {I|L}YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};[Y{I|L}]{[CA]|SS}[{M(Oxidation (M))|F}T]P{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 6.7471;5.3833;3.5682;2.2877;1.3024 +;-;+;-;- + 181 + NaN NaN 371234.2 NaN 14255 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17971 75.635 NaN 969510 35 0 93096 0.261 + 27145 SYMWTINNF 9 104 596.2605218647798 1190.5064907963595 2 596.2603149414062 MULTI HCD FTMS 0 0 0 17967 756951 0.7940581304962188 -2 0.0619964599609375 4 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 129.77232118876745 0.0006187813247758304 2 GN{I|L}TWEC{M(Oxidation (M))|F} 8 7 68.995 0 0 5.7954 0 0 222.100389549025 0 222.100389549025 0 43.92281585743655 0 0 0 1.8494850021680094 0 0.3807196863200844 0.7614393726401688 GN{I|L}TWEC{M(Oxidation (M))|F} 5.7954 - 4822 NaN NaN 241429.1 NaN 14256 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17972 75.639 NaN 287100 35 0 29829 0.261 + 25825 SLRGSSYGSL 10 63 513.7652491414995 1025.5159453497988 2 513.7648315429688 MULTI HCD FTMS 0 0 0 17967 449691.5 1 0 0 5 Unmodified _SLRGSSYGSL_ ENSG00000159899|ENST00000342694|NPR2;nc|ENSG00000159899|P20594-2|NPR2 12.240655878213236 0.39661705172222156 2 [QP]{I|L}N{M(Oxidation (M))|F}SV 7 9 33.148 0 0 3.2323 0 0 0 237.08527551822502 237.08527551822502 13.917775508771761 0 0 0 0 0 0 0.3807196863200844 0 [QP]{I|L}N{M(Oxidation (M))|F}SV 3.2323 - 165 + NaN NaN 134263 NaN 14257 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17973 75.642 NaN 221600 35 0 23330 0.261 + 12315 KMAAPAPLA 9 66 435.25110079159066 NaN 0 435.2513122558594 PEAK HCD FTMS 0 0 0 17967 243467.25 0.8116249663253258 -4 0.1139984130859375 6 Unmodified _KMAAPAPLA_ ENST00000256854.9_1_18:55289114-55289363:-|nuORF 4.3292370932331545 0.2742679634796037 2 Q 1 9 7.9711 0 0 0.91781 0 0 326.1932283392376 411.22284876041255 737.4160770996501 0 0 0 0 0 0.5752574989159953 0 0 0 Q 0.91781 - 20 + NaN NaN 115585.9 NaN 14258 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17974 75.645 NaN 916780 35 0 63404 0.261 + 7287 FTLDNYGFIL 10 105 601.8084615813646 1201.602370229529 2 602.3117065429688 MULTI HCD FTMS 0 0 0 17967 343159.5625 0.38367287641680875 -16 0.4465179443359375 7 Unmodified _FTLDNYGFIL_ tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1 21.536976647645854 0.3096624038397699 2 [Y{I|L}]T[DG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 10 5 + 53.871 0 0 4.4833 4.4833 88.152 0 0 0 9.47621246364342 24.363137320540986 9.47621246364342 13.957576059708117 0 1 1.5228787452803376 0.3494850021680094 0.4793036574208875 [Y{I|L}]T[DG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]T[DG]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]D{[VA]|[{I|L}G]}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]{I|L}[DG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]TM{[WT]|[RM]}{M(Oxidation (M))|F}K{I|L};[Y{I|L}]{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L};[YT]D{[VA]|[{I|L}G]}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]T[DG]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YT]{I|L}[DG]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]TM{[WT]|[RM]}{M(Oxidation (M))|F}{I|L}K 4.4833;3.3217;3.0927;2.9228;2.3878;2.1357;1.9311;1.8699;1.7612;1.3158 -;-;-;-;-;-;-;-;-;- 2871 NaN NaN 233999.2 NaN 14259 3713 17967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17976 75.65 NaN 1754200 35 0 324190 0.327 + 22321 QPINFSVSL 9 73 502.77434944649116 1003.5341459597823 2 502.7744140625 MULTI HCD FTMS 0 0 0 17975 1352576.5 0.42289120539219105 2 -0.0352020263671875 1 Unmodified _QPINFSVSL_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 106.94017166704063 0.003441928997083001 2 [QP]{I|L}N{M(Oxidation (M))|F}SVS{I|L} 9 0 + 74.618 0 0 7.4355 7.4355 91.069 0 0 0 11.57010050553312 49.373503722718304 11.57010050553312 9.208187539523749 0 2.1549471895720984 0 1.2302046884880937 0.6643943297944485 + + [QP]{I|L}N{M(Oxidation (M))|F}SVS{I|L};[QP]{I|L}GG{M(Oxidation (M))|F}SVS{I|L};{[TV]|[{I|L}S]}[VS]{[WN]|[YH]}VS{I|L};[HV]V[YT]SVS{I|L};[VS][HV][YT]VS{I|L};[VS]{[TV]|[{I|L}S]}{[WN]|[YH]}VS{I|L};[HV]VS[YT]VS{I|L} 7.4355;6.5179;5.0702;3.7254;3.4534;3.2806;2.6229 +;-;-;-;-;-;- + 317 NaN NaN 359462.2 NaN 14260 3714 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17977 75.655 NaN 2210600 35 0 390220 0.261 + 28522 TPQFPDMIL 9 84 539.26788511357 1076.5212172939398 2 539.268310546875 MULTI HCD FTMS 0 0 0 17975 2292699 0.11769811403667284 -24 0.6493759155273438 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 70.33199760932243 0.0089807860198535 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 72.106 0 0 6.698 6.698 86.104 0 0 0 2.2184874961635614 16.478174818886373 2.2184874961635614 2.2184874961635614 0 1.8494850021680094 0 1.1549471895720984 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QTPD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]TPD{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]TE{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[{I|L}V]E[QP]T 6.698;6.492;5.954;5.6366;5.5107;4.6554;2.7234;0.27015 -;+;-;-;-;-;-;- + 972 NaN NaN 447316.8 NaN 14261 3714 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17978 75.658 NaN 1105500 35 0 120870 0.261 + 1655 CCPMFYFSII 10 99 612.2690178584618 1222.5234827837235 2 612.2692260742188 MULTI HCD FTMS 0 0 0 17975 588466.125 0.24086428184339523 -22 0.5909881591796875 3 Unmodified _CCPMFYFSII_ REV__ENSG00000103502|ENST00000219789|CDIPT;REV__ENST00000563893.5_1_16:29872371-29874522:-|nuORF;REV__nc|ENSG00000103502|O14735-2|CDIPT 6.2057823575117 0.44245551207394906 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 29.896 0 0 2.4454 0 0 684.209061444606 0 684.209061444606 0 8.469100130080562 0 0 0 0.75 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.4454 - 300 NaN NaN 270245.9 NaN 14262 3714 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17979 75.661 NaN 1078300 35 0 166690 0.261 -1 SSMDLRSFLL 10 95 592.8026566945545 1183.5907604559088 2 592.802734375 MULTI HCD FTMS 0 0 0 17975 811690.875 0.40012108025772536 -15 0.4102783203125 4 Oxidation (M) _SSM(Oxidation (M))DLRSFLL_ chr4:70523168-70523868|111|30.48|0.04|9.68|+|1|None,AMTN|1 36.12702656103203 0.1790159924230938 2 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 82.798 0 0 6.9955 0 0 177.04258925605626 0 177.04258925605626 0 65.63100339696028 0 0 0 2.4049471895720984 0 0.5994850021680094 1.2856668758921828 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6.9955 - 1123 NaN NaN 267596.2 NaN 14263 3714 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17980 75.665 NaN 1196700 35 0 142450 0.261 -1 VDLACQNFIL 10 99 596.8046699464245 1191.594786959649 2 596.8047485351562 MULTI HCD FTMS 0 0 0 17975 346695.875 0.18039220812940107 -11 0.29343414306640625 5 Carbamidomethyl (C) _VDLAC(Carbamidomethyl (C))QNFIL_ ENSG00000164953|ENST00000453321|TMEM67 22.736283301280096 0.29844449404982915 2 KY[RH]T{I|L}NG 8 -1 44.73 0 0 3.7538 0 0 0 219.0773104303344 219.0773104303344 4.653207839185939 0 0 0 0 0.5 0 0 0.7614393726401688 KY[RH]T{I|L}NG 3.7538 - 3364 + NaN NaN 269709.8 NaN 14264 3714 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17981 75.668 NaN 512310 35 0 56739 0.261 -1 EEKEAMNSI 9 90 533.7391429747042 1065.4637330162084 2 533.736328125 MULTI HCD FTMS 0 0 0 17975 74658.8515625 0.41663969386333266 1 -0.0225830078125 6 Oxidation (M) _EEKEAM(Oxidation (M))NSI_ ENSG00000152193|ENST00000282003|OBI1 13.042465956692817 0.2476723265019929 2 SV[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 7 -1 21.393 0 0 2.0079 0 0 130.09204219765212 0 130.09204219765212 0 1.0454816529999533 0 0 0 0 0 0.2614393726401688 0.5994850021680094 SV[YC(Carbamidomethyl (C))]{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 2.0079 - 394 + NaN NaN 178570.3 NaN 14265 3714 17975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17983 75.673 NaN 1301100 35 0 178800 0.327 + 21413 PVQEELSVL 9 85 507.2793843102838 1012.5442156873676 2 507.279296875 MULTI HCD FTMS 0 0 0 17982 1461326.875 0.729740725960818 -2 0.0485382080078125 1 Unmodified _PVQEELSVL_ ENSG00000122481|ENST00000370202|RWDD3;ENST00000492639.5_1_1:95699771-95702959:+|nuORF;ENST00000495272.5_1_1:95699786-95705367:+|nuORF;ENST00000497058.5_1_1:95699786-95705364:+|nuORF;nc|ENSG00000122481|Q9Y3V2-2|RWDD3;nc|ENSG00000122481|Q9Y3V2-4|RWDD3 34.93206674587334 0.08860942999206235 2 [EP]N{I|L}E{I|L}SV{I|L} 9 3 + 65.493 0 0 6.4681 6.4681 87.956 0 0 0 9.307000266495464 51.75209360090918 9.307000266495464 7.95880017344075 0 1.4247425010840047 0.9208187539523752 0.8494850021680094 0 [EP]N{I|L}E{I|L}SV{I|L};[EP][VG]AE{I|L}SV{I|L};[EP]GG{I|L}E{I|L}SV{I|L};[TP][PS]AE{I|L}SV{I|L} 6.4681;5.6821;5.5587;4.5988 -;-;-;- 378 NaN NaN 289483.8 NaN 14266 3715 17982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17984 75.677 NaN 1135100 35 0 189360 0.262 + -1 RTERDMWSL 9 75 403.86121970501256 1208.5618297152378 3 403.8612976074219 MULTI HCD FTMS 0 0 0 17982 1259857.375 0.7410899579177956 -30 0.808624267578125 2 Oxidation (M) _RTERDM(Oxidation (M))WSL_ REV__nc|ENSG00000081692|Q9H9V9-1|JMJD4 4.189502756095605 0.319257502753388 2 {I|L}{I|L} 2 -1 13.812 0 0 1.1429 0 0 964.3644472904193 0 964.3644472904193 0 2.8431811792050627 0 0 0 0 0 0 0 {I|L}{I|L} 1.1429 - 160 NaN NaN 274391.7 NaN 14267 3715 17982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17985 75.681 NaN 310540 35 0 45170 0.261 + 34677 YPTPSDFGL 9 47 498.73742648295297 NaN 0 498.73773193359375 PEAK HCD FTMS 0 0 0 17982 311625.875 0.8665626713274839 2 -0.02861785888671875 3 Unmodified _YPTPSDFGL_ ENSG00000188483|ENST00000372491|IER5L 46.020951573049366 0.05896589607441476 2 G{M(Oxidation (M))|F}D 3 8 33.698 0 0 3.3852 0 0 131.09572908306296 542.2260988549266 673.3218279379896 0 0 0 0 0 1.4247425010840047 0 0.3252574989159953 0 G{M(Oxidation (M))|F}D 3.3852 - 29 + NaN NaN 142936.6 NaN 14268 3715 17982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17987 75.685 NaN 80768000 35 0 9883300 0.327 + 13551 KYPENFFLL 9 87 585.8131605635726 1169.6117681939452 2 585.8141479492188 MULTI HCD FTMS 0 0 0 17986 77880400 0.395887524438355 -9 0.21739959716796875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 137.42381684818497 0.00015474832393368816 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.958 0 0 8.2897 8.2897 91.239 0 0 0 8.182503180159344 16.478174818886387 8.182503180159344 8.182503180159344 0 2.555462187404089 0 0.5010912013506126 2.0228787452803374 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP]YKGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 8.2897;7.5901;7.5024;6.8028;6.5891;6.5579;6.4823;6.4566;5.7706;5.757 +;-;-;-;-;-;-;-;-;- + 5525 NaN NaN 527168.9 NaN 14269 3716 17986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17988 75.69 NaN 5310700 35 0 1399600 0.261 + -1 KIFNMKDQ 8 112 520.2659919535221 1038.517430973844 2 520.2648315429688 MULTI HCD FTMS 0 0 0 17986 124156.484375 0.1611879697283641 -10 0.2435302734375 2 Oxidation (M) _KIFNM(Oxidation (M))KDQ_ REV__ENSG00000168491|ENST00000307588|CCDC110;REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110 43.85829265575387 0.18136530125488975 2 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 77.748 0 0 7.4864 0 0 0 125.07244883335251 125.07244883335251 32.46453930522307 0 0 0 0 2.2302046884880937 1.3010299956639813 0.23965182871044374 1.433324508278978 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7.4864 - 2959 NaN NaN 904248.8 NaN 14270 3716 17986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17989 75.693 NaN 349130 35 0 55683 0.261 -1 YPPMCHLT 8 63 509.72847906723706 NaN 0 509.7283935546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _YPPMC(Carbamidomethyl (C))HLT_ ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;ENST00000566882.5_1_15:43482236-43485079:+|nuORF;ENST00000568936.1_1_15:43482505-43485079:+|nuORF;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;nc|ENSG00000166946|O95273-3|CCNDBP1;nc|ENSG00000166946|O95273-4|CCNDBP1 20.871210003555333 0.3841330378571171 2 {I|L}DA{[QC]|[C(Carbamidomethyl (C))A]}P 6 -1 26.031 0 0 2.5585 0 0 130.05490627724913 257.0930575006469 387.14796377789605 0 0 0 0 0 0.3807196863200844 0 0 0.3807196863200844 {I|L}DA{[QC]|[C(Carbamidomethyl (C))A]}P 2.5585 - 47 + NaN NaN 157714.7 NaN 14271 3716 17986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17990 75.697 NaN 627350 35 0 36384 0.261 + 19844 NYAWVYYHL 9 106 614.7934403525604 NaN 0 614.7931518554688 PEAK HCD FTMS 0 0 0 17986 118939.0625 0.3324389799934806 -4 0.0938262939453125 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 85.27202061508552 0.0012647497027627758 2 {M(Oxidation (M))|F}AWVYY 6 4 35.042 0 0 2.8546 0 0 130.07972630883324 265.1302584283813 395.20998473721454 0 0 0 0 0 1.2302046884880937 0 0 0 {M(Oxidation (M))|F}AWVYY 2.8546 - 306 + NaN NaN 202074.1 NaN 14272 3716 17986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17992 75.701 NaN 773180 35 0 154060 0.327 + 20036 NYIHRPDVYA 10 79 624.3135549658433 1246.6125569984865 2 624.8168334960938 MULTI HCD FTMS 0 0 0 17991 322315.71875 0.8838744232142834 2 -0.0286102294921875 1 Unmodified _NYIHRPDVYA_ tr|U7STU3|U7STU3_FUSNUSpermidine/putrescinetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01188PE=4SV=1 29.081581746732265 0.240155558137004 2 [YN]{I|L} 3 7 44.749 0 0 3.5897 0 0 0 853.3997245588026 853.3997245588026 15.285371682087217 0 0 0 0 1 1.6989700043360187 0 0.7302046884880937 + [YN]{I|L} 3.5897 + + 198 NaN NaN 214332.2 NaN 14273 3717 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17993 75.706 NaN 490390 35 0 64095 0.262 + 18374 MPMNVADLI 9 64 510.2484562590706 1018.4823595849413 2 510.24822998046875 MULTI HCD FTMS 0 0 0 17991 238715.734375 0.4208003195456643 7 -0.088104248046875 2 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 43.85829265575387 0.04763305254408404 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L} 9 4 + 74.09 0 0 7.2746 7.2746 89.791 0 0 0 8.92103918514512 16.478174818886373 8.92103918514512 8.92103918514512 0 1.4247425010840047 1.3979400086720375 0.3494850021680094 0.3494850021680094 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{[QC]|[C(Carbamidomethyl (C))A]}AD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{[MG]|[TS]}TAD{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T[NG][QP]{[QD]|[EN]|[WG]|[KD]|[RS]} 7.2746;6.3987;0.89231 -;-;- 198 NaN NaN 166139.9 NaN 14274 3717 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17994 75.709 NaN 431570 35 0 30944 0.261 + 34397 YPEPFLIKL 9 94 560.3260567071405 1118.637560481081 2 560.3257446289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YPEPFLIKL_ ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP 34.40172386719151 0.0910440009062557 2 YPE 3 6 37.279 0 0 3.3325 0 0 0 726.4555910092105 726.4555910092105 16.30970574307498 0 0 0 0 0.4247425010840047 1.2218487496163564 0.23965182871044374 0 + YPE 3.3325 + + 198 + NaN NaN 170508.9 NaN 14275 3717 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17995 75.713 NaN 506490 35 0 28071 0.261 + 19845 NYAWVYYHL 9 96 614.7934403525604 NaN 0 614.7942504882812 PEAK HCD FTMS 0 0 0 17991 271884.5 0.7599270076307981 -3 0.05120086669921875 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 62.57269311338072 0.020551833314469407 2 AWVYY 5 4 38.566 0 0 3.1417 0 0 277.1006673007308 265.1296480768188 542.2303153775496 0 0 0 0 0 1.9604093769761877 0 0 0 + AWVYY 3.1417 + + 429 + NaN NaN 181013.1 NaN 14276 3717 17991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17997 75.717 NaN 565520 35 0 61034 0.327 + 25178 SALQELEEL 9 69 516.2664076598139 1030.5182623864278 2 516.2664794921875 MULTI HCD FTMS 0 0 0 17996 381285.9375 0.47770053505247556 1 -0.01267242431640625 1 Unmodified _SALQELEEL_ ENSG00000004897|ENST00000066544|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;nc|ENSG00000004897|P30260-2|CDC27 76.82478488871298 0.006879825292024087 2 QE{I|L}EE{I|L} 6 3 67.542 0 0 6.5542 0 0 271.1522694318375 0 271.1522694318375 0 50.84244409179611 0 0 0 1.774227503252014 0 0.6989700043360187 0.7059771852360797 + QE{I|L}EE{I|L} 6.5542 + + 562 NaN NaN 200313.9 NaN 14277 3718 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17998 75.722 NaN 320020 35 0 47854 0.261 + 18309 MPEPTVLSL 9 50 493.76520153437195 NaN 0 493.76470947265625 PEAK HCD FTMS 0 0 0 17996 192186.546875 0.43988092543108726 -2 0.0319366455078125 2 Unmodified _MPEPTVLSL_ ENSG00000196683|ENST00000358435|TOMM7 58.678817012210395 0.027870599607392636 2 S{I|L}V{M(Oxidation (M))|F} 4 8 36.855 0 0 3.7396 0 0 131.09546241041193 405.15708337955317 536.2525457899651 0 0 0 0 0 1.3807196863200843 0 0.3494850021680094 0 S{I|L}V{M(Oxidation (M))|F} 3.7396 - 36 + NaN NaN 157099.3 NaN 14278 3718 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 17999 75.725 NaN 5487500 35 0 1441800 0.261 + -1 KIFGKMGNE 9 122 520.2659919535221 1038.517430973844 2 520.266357421875 MULTI HCD FTMS 0 0 0 17996 349983.75 0.4543715165937691 -8 0.17441558837890625 3 Oxidation (M) _KIFGKM(Oxidation (M))GNE_ REV__ENSG00000115361|ENST00000233710|ACADL 39.94969957227396 0.06557568441294001 2 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 75.851 0 0 7.3038 0 0 0 125.0723637164996 125.0723637164996 28.18205088429579 0 0 0 0 2.2614393726401687 1.3010299956639813 0.2302046884880938 1.2218487496163566 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7.3038 - 3108 NaN NaN 927234.8 NaN 14279 3718 17996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18001 75.73 NaN 968890 35 0 99832 0.327 + 6266 FPFERLYDL 9 89 600.3083661148011 1198.602179296402 2 600.308837890625 MULTI HCD FTMS 0 0 0 18000 614901.0625 0.5999645329759473 -1 0.01267242431640625 1 Unmodified _FPFERLYDL_ ENSG00000144028|ENST00000323853|SNRNP200 61.08992128646608 0.016056751534446034 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YVE 9 2 + 84.408 0 0 7.0422 7.0422 88.391 0 0 0 15.841671119825662 50.6223079692665 15.841671119825662 6.505149978319906 0 2.1861818737241734 1.5228787452803376 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}R{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}R{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}ER{I|L}DY{I|L};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}ER{I|L}YD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}EY[R{I|L}]VE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ER{M(Oxidation (M))|F}{I|L}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ER{I|L}{M(Oxidation (M))|F}YVE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{M(Oxidation (M))|F}R{I|L}DY{I|L} 7.0422;6.4995;6.2898;5.747;5.7279;5.6199;5.1917;5.1675;5.0206;4.9755 -;+;-;-;-;+;-;-;-;- + 2231 NaN NaN 232802.6 NaN 14280 3719 18000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18002 75.734 NaN 942260 35 0 115460 0.264 + 30432 VLPKKGWLLFF 11 67 449.9444307988161 NaN 0 449.9447326660156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VLPKKGWLLFF_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF 10.898955630103616 0.3112029450804839 2 G{M(Oxidation (M))|F}N 3 9 15.802 0 0 1.7599 0 0 62.48826797351166 514.2309664361936 576.7192344097053 0 0 0 0 0 0 0 0 0.6505149978319906 G{M(Oxidation (M))|F}N 1.7599 - 145 + NaN NaN 233829.1 NaN 14281 3719 18000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18003 75.738 NaN 411550 35 0 46524 0.261 + 15601 LPDYTSPVVL 10 69 552.30268783358 1102.5908227339598 2 552.3024291992188 MULTI HCD FTMS 0 0 0 18000 119336.796875 0.14315448164486924 6 -0.06878662109375 3 Unmodified _LPDYTSPVVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 22.736283301280096 0.29844449404982915 2 PS[VP]V{I|L} 6 4 34.442 0 0 3.1237 0 0 492.22545058418126 0 492.22545058418126 0 8.244171855527966 0 0 0 1.3807196863200843 0 0 0 PS[VP]V{I|L} 3.1237 - 224 NaN NaN 151112.3 NaN 14282 3719 18000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18005 75.743 NaN 582280 35 0 61217 0.327 + 35636 YYIFIPSKF 9 68 589.318133034262 1176.621713135324 2 589.31787109375 MULTI HCD FTMS 0 0 0 18004 306840.5 0.01099029077946766 68 -1.3898468017578125 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 47.594388314883695 0.03493607795751234 2 YY{I|L} 3 6 43.94 0 0 3.7344 0 0 0 734.3880798376985 734.3880798376985 16.302112417116064 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + YY{I|L} 3.7344 + + 338 + NaN NaN 179663.9 NaN 14283 3720 18004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18006 75.747 NaN 455890 35 0 60394 0.261 + 16749 LYDALEHHDF 10 75 630.290283203125 NaN 0 630.290283203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LYDALEHHDF_ REV__ENSG00000104321|ENST00000262209|TRPA1;REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant 24.020572477871973 0.24806657497419846 2 YYDK 4 -1 29.483 0 0 2.3425 0 0 113.07991533027491 573.2014864557249 686.2814017859998 0 0 0 0 0 1.2302046884880937 0 0.3252574989159953 0 YYDK 2.3425 - 289 + NaN NaN 162977 NaN 14284 3720 18004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18008 75.752 NaN 1372900 35 0 605330 0.327 + 17295 LYPQFMFHL 9 79 606.2999405695684 NaN 0 606.2997436523438 PEAK HCD FTMS 0 0 0 18007 891490 0.5518439276253059 -1 0.00928497314453125 1 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 67.34385681178166 0.011584154028685094 2 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 33.249 0 0 2.7465 0 0 276.149097996177 265.1308687799438 541.2799667761208 0 0 0 0 0 1.872363747448347 0 0 0.2614393726401688 + PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7465 + + 111 + NaN NaN 304862.6 NaN 14285 3721 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18009 75.756 NaN 957270 35 0 79957 0.261 + 6751 FPQKFIDLL 9 107 560.8236676243027 1119.6327823154054 2 560.8238525390625 MULTI HCD FTMS 0 0 0 18007 722432.375 0.15218244791897617 -15 0.31005859375 2 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 106.94017166704063 0.003441928997083001 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 81.328 0 0 7.2638 7.2638 90.773 0 0 0 21.12704280191288 41.12175425660632 21.12704280191288 9.208187539523749 0 1.8851518780601924 1.3979400086720375 0.9361818737241735 0.2302046884880938 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};[QP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};[QP]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}[{I|L}V]E;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}KQP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{[VA]|[{I|L}G]}SV{M(Oxidation (M))|F}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}KQP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}{I|L} 7.2638;6.4413;5.2286;5.1181;4.9648;4.6817;4.6702;4.4723;4.4014;4.1526 +;-;-;-;-;-;-;-;-;- + 2188 NaN NaN 233149.7 NaN 14286 3721 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18010 75.76 NaN 728470 35 0 92017 0.261 + 1224 AYLLYSLHL 9 69 546.8081431998717 1091.6017334665432 2 546.8079223632812 MULTI HCD FTMS 0 0 0 18007 273784.15625 0.07003099811969446 15 -0.19454193115234375 3 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 123.09622228370866 0.0010236603636890153 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 101.38 0 0 9.2873 9.2873 97.333 0 0 0 13.310384486277798 13.310384486277798 13.310384486277798 30.440680443502757 0 2.774227503252014 1.6989700043360187 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L};[{M(Oxidation (M))|F}V]T{I|L}YS{I|L}H{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]RR{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}RR[{I|L}T]{[CP]|[EA]} 9.2873;6.4987;4.3042;2.1442 +;-;-;- + 358 NaN NaN 193645.2 NaN 14287 3721 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18011 75.763 NaN 1098600 35 0 236120 0.261 + 26075 SPFRFEISF 9 100 565.2877769914294 1128.5610010496587 2 565.2882690429688 MULTI HCD FTMS 0 0 0 18007 306479.8125 0.11564906084607295 9 -0.11560821533203125 4 Unmodified _SPFRFEISF_ ENSG00000105011|ENST00000263382|ASF1B 87.25819977447905 0.004597812622239197 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F} 9 2 + 82.828 0 0 7.3392 7.3392 89.675 0 0 0 8.247490543075173 8.247490543075173 8.247490543075173 8.247490543075173 0 2.1989700043360187 1.3979400086720375 1.0994850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};SP{M(Oxidation (M))|F}R{M(Oxidation (M))|F}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}E{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}ES{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[HG]|PP}HTPS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PR{M(Oxidation (M))|F}[{I|L}T]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[WT]|[RM]}[{I|L}T]D{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[KQ][HQ]{I|L}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[HG]|PP}HTPS{M(Oxidation (M))|F} 7.3392;6.6084;6.5638;6.4294;5.654;4.0983;3.8412;3.0658;2.9336;2.5929 -;+;-;-;-;-;-;-;-;- + 812 NaN NaN 257689.5 NaN 14288 3721 18007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18013 75.768 NaN 1009500 35 0 61404 0.327 -1 0 94 550.2590287363187 1098.5035045394372 2 550.2594604492188 MULTI HCD FTMS 0 0 0 18012 638314 0.2557928311854433 -23 0.5278167724609375 1 NaN NaN 2 TPQ{M(Oxidation (M))|F}PDST 8 -1 76.341 0 0 6.9495 0 0 0 222.08815942935783 222.08815942935783 34.93984888652717 0 0 0 0 1.3494850021680094 1.6989700043360187 1.1989700043360187 0.28872548999643577 TPQ{M(Oxidation (M))|F}PDST 6.9495 - 1298 + NaN NaN 261873.1 NaN 14289 3722 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18014 75.772 NaN 847670 35 0 173270 0.263 + 26469 STTTHYDYHV 10 68 408.5150882007756 1222.5234352025268 3 408.51519775390625 MULTI HCD FTMS 0 0 0 18012 396989.3125 0.2687708168644011 -13 0.2574920654296875 2 Unmodified _STTTHYDYHV_ tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 3.5964929083625545 0.45626689593999237 2 V 1 9 13.099 0 0 1.0715 0 0 1105.4445452872908 0 1105.4445452872908 0 5.0269751594335315 0 0 0 0 0 0 0 + V 1.0715 + + 21 + NaN NaN 212655.4 NaN 14290 3722 18012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18016 75.777 NaN 6000400 35 0 1086200 0.327 + 28523 TPQFPDMIL 9 88 539.26788511357 1076.5212172939398 2 539.2682495117188 MULTI HCD FTMS 0 0 0 18015 6909023.5 0.35468198650806426 -15 0.27957916259765625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 89.40071534611396 0.0045416704840156395 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 75.729 0 0 7.0346 7.0346 86.502 0 0 0 1.7609125905568135 16.478174818886373 1.7609125905568135 1.7609125905568135 0 1.8494850021680094 0 1.392159058960253 0.25 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 7.0346;6.871;6.0647;5.9011;5.7834 -;+;-;-;- + 1517 NaN NaN 588083.1 NaN 14291 3723 18015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18017 75.781 NaN 1892400 35 0 197960 0.261 + 1656 CCPMFYFSII 10 110 612.2690178584618 1222.5234827837235 2 612.26904296875 MULTI HCD FTMS 0 0 0 18015 1125656 0.460740750442872 -13 0.23413848876953125 2 Unmodified _CCPMFYFSII_ REV__ENSG00000103502|ENST00000219789|CDIPT;REV__ENST00000563893.5_1_16:29872371-29874522:-|nuORF;REV__nc|ENSG00000103502|O14735-2|CDIPT 10.073929032068715 0.4168838835836452 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 32 0 0 2.6175 0 0 684.2082766973579 0 684.2082766973579 0 8.300463790750019 0 0 0 0.9604093769761877 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.6175 - 535 NaN NaN 378909.5 NaN 14292 3723 18015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18018 75.785 NaN 477650 35 0 47192 0.261 + -1 IYYQMEVDAI 10 88 630.7919311523438 NaN 0 630.7919311523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _IYYQM(Oxidation (M))EVDAI_ REV__ENSG00000141255|ENST00000572969|SPATA22;REV__nc|ENSG00000141255|Q8NHS9-2|SPATA22 10.073929032068715 0.33156240198919784 2 YYD[HQ]Y 6 -1 21.911 0 0 1.7424 0 0 112.06779660721584 273.12424646549067 385.1920430727065 0 0 0 0 0 0 0 0.8494850021680094 0 YYD[HQ]Y 1.7424 - 136 + NaN NaN 169178.5 NaN 14293 3723 18015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18020 75.789 NaN 1178400 35 0 320750 0.327 + 33667 YKGPEAAQCIL 11 93 596.8046699464245 1191.594786959649 2 596.80615234375 MULTI HCD FTMS 0 0 0 18019 1219342.25 0.6344460860486795 -1 0.01244354248046875 1 Unmodified _YKGPEAAQCIL_ REV__ENSG00000036448|ENST00000262113|MYOM2;REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant 31.26834338654808 0.19318467762437158 2 KYPE[PA]{I|L}N 8 -1 54.555 0 0 4.5783 0 0 0 276.0994967096313 276.0994967096313 32.708865128625185 0 0 0 0 0.5 0 0.5649093276264391 1.1421590589602533 KYPE[PA]{I|L}N 4.5783 - 1307 + NaN NaN 268748.6 NaN 14294 3724 18019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18021 75.794 NaN 596590 35 0 43367 0.261 + 11100 IYIAATYTF 9 92 531.7790558466875 NaN 0 531.7797241210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IYIAATYTF_ ENSG00000048707|ENST00000620676|VPS13D;nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant 67.34385681178166 0.011584154028685094 2 YT 2 7 21.964 0 0 2.0691 0 0 632.3539970539185 162.0560701959594 794.4100672498779 0 0 0 0 0 1.0994850021680094 0 0 0 + YT 2.0691 + + 656 + NaN NaN 207352.4 NaN 14295 3724 18019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18023 75.799 NaN 1543600 35 0 253450 0.327 -1 KYCSEYFVI 9 83 403.5269301645023 NaN 0 403.5269470214844 PEAK HCD FTMS 0 0 0 18022 1555462.25 0.9143198871753017 1 -0.01576995849609375 1 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))SEYFVI_ ENST00000229795.7_2_6:36078211-36078337:+|nuORF 16.149105407346934 0.21324626030841579 2 KD 2 -1 5.0494 0 0 0.62722 0 0 287.78602478037334 271.1087923936798 558.8948171740531 0 0 0 0 0 0 0 0 0.4247425010840047 KD 0.62722 - 26 + NaN NaN 324967.2 NaN 14296 3725 18022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18024 75.803 NaN 1359400 35 0 212230 0.261 + -1 EPPQKCEALI 10 105 592.8026566945545 1183.5907604559088 2 592.8025512695312 MULTI HCD FTMS 0 0 0 18022 1751111.5 0.8632062360337928 -4 0.04686737060546875 2 Carbamidomethyl (C) _EPPQKC(Carbamidomethyl (C))EALI_ REV__ENSG00000012817|ENST00000317961|KDM5D;REV__nc|ENSG00000012817|Q9BY66-2|KDM5D;REV__nc|ENSG00000012817|Q9BY66-3|KDM5D 34.40172386719151 0.19398797222092762 2 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 82.803 0 0 6.9959 0 0 177.04217726875157 0 177.04217726875157 0 62.881550498642156 0 0 0 2.1747425010840047 0 0.555462187404089 1.392159058960253 KPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6.9959 - 1573 NaN NaN 291224.9 NaN 14297 3725 18022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18025 75.806 NaN 708750 35 0 58739 0.262 + 21913 QDPELLSVI 9 73 507.2793843102838 1012.5442156873676 2 507.27911376953125 MULTI HCD FTMS 0 0 0 18022 523330.84375 0.2613349801260669 8 -0.10057830810546875 3 Unmodified _QDPELLSVI_ ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1 29.84058131909904 0.11198220037953927 2 {I|L}SV{I|L} 4 5 51.67 0 0 5.103 0 0 582.2648182599625 0 582.2648182599625 0 30.976277995878547 0 0 0 1.5 0 0.9247425010840047 0 + {I|L}SV{I|L} 5.103 + + 110 NaN NaN 192404.4 NaN 14298 3725 18022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18026 75.81 NaN 458690 35 0 66022 0.261 + 22322 QPINFSVSL 9 64 502.77434944649116 1003.5341459597823 2 502.774169921875 MULTI HCD FTMS 0 0 0 18022 183998.484375 0.057528236552742106 13 -0.17279052734375 4 Unmodified _QPINFSVSL_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 41.95555342248728 0.056367691549927025 2 SVS{I|L} 4 5 51.3 0 0 5.1119 0 0 599.3071156232437 0 599.3071156232437 0 40.6651564221918 0 0 0 1.1307196863200843 0 0.805462187404089 0 + SVS{I|L} 5.1119 + + 70 NaN NaN 166953.5 NaN 14299 3725 18022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18028 75.815 NaN 101670000 35 0 12741000 0.327 + 13552 KYPENFFLL 9 86 585.8131605635726 1169.6117681939452 2 585.8143310546875 MULTI HCD FTMS 0 0 0 18027 152933920 0.777405239205929 1 -0.01593017578125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 110.5527297667825 0.0028521687250969148 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 83.478 0 0 7.1372 7.1372 90.522 0 0 0 5.1665006866408305 37.54813699823185 5.1665006866408305 9.208187539523749 0 2.4489700043360187 0 0.25 1.7614393726401687 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KYPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};KYPEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]N[YK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP]YKN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.1372;6.35;6.3079;5.8563;5.5206;5.4021;4.8553;4.7495;4.6148;4.5727 +;-;-;+;-;-;-;-;-;- + 5331 NaN NaN 477340.3 NaN 14300 3726 18027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18029 75.819 NaN 999140 35 0 57371 0.261 + 7288 FTLDNYGFIL 10 110 601.8084615813646 1201.602370229529 2 601.8087158203125 MULTI HCD FTMS 0 0 0 18027 933368.6875 0.5790601604690706 1 -0.01593017578125 2 Unmodified _FTLDNYGFIL_ tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1 32.78568957990786 0.20801173326193015 2 [YT]DVAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 10 6 + 51.605 0 0 4.2947 4.2947 84.778 0 0 0 0.6066730616973786 31.91243869339895 0.6066730616973786 8.336685782334754 0 1.2396518287104437 0 0.5189301784845296 0.8338395061109687 [YT]DVAN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]A[DV]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CT]|[{M(Oxidation (M))|F}G]}K{M(Oxidation (M))|F}{I|L}{I|L};[YT]{I|L}[DG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]DVAGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}K{I|L}{I|L};[YT]A[DV]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QD]|[EN]|[WG]|[KD]|[RS]}VH{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[RD]H{I|L}{I|L};[YT]{I|L}[DG]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.2947;3.6009;3.4312;3.2697;2.8381;2.3118;2.1443;1.9573;1.909;1.8131 -;-;-;-;-;-;-;-;-;- 3159 NaN NaN 241011 NaN 14301 3726 18027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18030 75.822 NaN 1004900 35 0 348320 0.261 -1 YCHECGKSF 9 67 565.7236623120219 1129.4327716908438 2 565.7241821289062 MULTI HCD FTMS 0 0 0 18027 428977.1875 0.40304814320808385 -23 0.45780181884765625 3 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HECGKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 4.75600775471527 0.31496297302216103 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP]{M(Oxidation (M))|F}E{I|L}S 8 -1 37.612 0 0 3.3302 0 0 0 162.92817847559186 162.92817847559186 11.414412723804546 0 0 0 0 0 1.3979400086720375 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[RP]{M(Oxidation (M))|F}E{I|L}S 3.3302 - 111 NaN NaN 248011.6 NaN 14302 3726 18027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18031 75.826 NaN 544550 35 0 53995 0.261 + 3130 EAPGEVLSVL 10 70 507.2793843102838 1012.5442156873676 2 507.7815246582031 MULTI HCD FTMS 0 0 0 18027 51882.2578125 0.03713938784418028 11 -0.14124298095703125 4 Unmodified _EAPGEVLSVL_ ENST00000262947.7_1_19:4660702-4664947:-|nuORF 24.020572477871973 0.2864316864133941 2 {I|L}SV{I|L} 4 6 43.844 0 0 4.3301 0 0 582.2650013654312 0 582.2650013654312 0 31.620768972555595 0 0 0 1 0 0.8807196863200843 0 + {I|L}SV{I|L} 4.3301 + + 164 NaN NaN 173668.7 NaN 14303 3726 18027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18033 75.83 NaN 911070 35 0 240480 0.327 + 33668 YKGPEAAQCIL 11 93 596.8046699464245 1191.594786959649 2 596.8046264648438 MULTI HCD FTMS 0 0 0 18032 586558.75 0.30519725136655096 2 -0.022796630859375 1 Unmodified _YKGPEAAQCIL_ REV__ENSG00000036448|ENST00000262113|MYOM2;REV__MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant 24.990960013464015 0.23933535780272686 2 KYPE[PA]{I|L}N 8 -1 51.208 0 0 4.2974 0 0 0 276.10044275455317 276.10044275455317 26.44061491126763 0 0 0 0 0.5 0 0.6109243748081782 0.7614393726401688 KYPE[PA]{I|L}N 4.2974 - 1320 + NaN NaN 238405.8 NaN 14304 3727 18032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18034 75.835 NaN 592120 35 0 53714 0.264 + 23301 RIEDTSRCDE 10 64 408.5150882007756 1222.5234352025268 3 409.5178527832031 MULTI HCD FTMS 0 0 0 18032 74612.4609375 0.16885558695452 3 -0.03704071044921875 2 Unmodified _RIEDTSRCDE_ REV__ENSG00000180116|ENST00000324616|C12orf40;REV__nc|ENSG00000180116|Q86WS4-2|REDIC1;REV__nc|ENSG00000180116|Q86WS4-3|REDIC1 5.731851221503515 0.44496410492002586 2 K{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 28.928 0 0 2.3662 0 0 0 684.1922097132924 684.1922097132924 3.248715810909175 0 0 0 0 0 0 0 0 K{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3662 - 32 + NaN NaN 185422.7 NaN 14305 3727 18032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18035 75.838 NaN 570230 35 0 117280 0.261 + -1 IWCSRRKMLMG 11 66 485.24529923629177 1452.7140683090754 3 485.24542236328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _IWC(Carbamidomethyl (C))SRRKM(Oxidation (M))LMG_ REV__ENST00000289734.11_1_8:41556976-41559097:-|nuORF 9.764250979337305 0.37200617284565546 2 {I|L}W 2 -1 38.188 0 0 2.6287 0 0 0 1150.5274307403754 1150.5274307403754 14.827796776480469 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}W 2.6287 + + 47 + NaN NaN 189962.8 NaN 14306 3727 18032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18036 75.842 NaN 403660 35 0 41393 0.261 + 19708 NYAENILTL 9 76 525.7768155756538 1049.5390782181075 2 526.2772216796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NYAENILTL_ ENSG00000132436|ENST00000433017|FIGNL1 78.06048673739656 0.006479972202176041 2 [YN]AEN{I|L}{I|L}T{I|L} 9 0 + 75.015 0 0 7.1475 7.1475 89.913 0 0 0 20.871280189675957 53.52740602048196 20.871280189675957 9.208187539523735 0 1.8516784832448856 1.5228787452803376 0.3252574989159953 0.6747425010840047 + + [YN]AEN{I|L}{I|L}T{I|L};[YN]AEGG{I|L}{I|L}T{I|L};[MT]{[QV]|[N{I|L}]|[RA]|[KV]}[MN]{I|L}T{I|L};[YN]AE[{I|L}T]QV{I|L};[KT]E[{I|L}T]EA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[KT]{[QV]|[N{I|L}]|[RA]|[KV]}[MN]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.1475;6.2701;3.2493;2.9607;0.63533;0.23811 +;-;-;-;-;- + 289 NaN NaN 163337.1 NaN 14307 3727 18032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18039 75.853 NaN 435560 35 0 68946 0.327 + 11367 IYNKYWPLF 9 76 622.3291474747292 NaN 0 622.3291015625 PEAK HCD FTMS 0 0 0 18038 411878.5625 1 0 0 1 Unmodified _IYNKYWPLF_ ENSG00000104660|ENST00000321250|LEPROTL1;LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;nc|ENSG00000104660|O95214-2|LEPROTL1 79.59630418116434 0.003121450158885891 2 {I|L}PWYKN 6 7 55.047 0 0 4.4298 0 0 165.07193936823143 273.1241854303344 438.19612479856585 0 0 0 0 0 2.548455006504028 0 0 0.5941876774005248 {I|L}PWYKN 4.4298 - 379 + NaN NaN 170454.5 NaN 14308 3729 18038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18040 75.857 NaN 132700 35 0 20186 0.261 -1 0 41 641.5485229492188 NaN 0 641.5485229492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 W 1 -1 1.9897 0 0 0.15531 0 0 621.7158832013687 470.2565096490844 1091.9723928504532 0 0 0 0 0 0 0 0 0 W 0.15531 - 1 + NaN NaN 124325.8 NaN 14309 3729 18038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18043 75.873 NaN 3915400 35 0 341110 0.327 + 6752 FPQKFIDLL 9 120 560.8236676243027 1119.6327823154054 2 560.8239135742188 MULTI HCD FTMS 0 0 0 18042 2521452.5 0.5311511873501271 -5 0.0593414306640625 1 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 176.83740622441886 1.0594397382223596E-10 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 95.729 0 0 8.55 8.55 92.841 0 0 0 21.444088479991365 16.478174818886373 16.478174818886373 9.208187539523749 0 2.1307196863200843 1.3010299956639813 1.579689690656103 0.48020468848809383 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{I|L}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{M(Oxidation (M))|F}PQK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}{I|L}VE 8.55;7.7276;7.5441;7.4174;6.8797;6.8136;6.7216;6.6347;6.595;6.4867 +;-;-;-;-;-;-;+;-;- + 5117 NaN NaN 681387.9 NaN 14310 3731 18042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18044 75.878 NaN 1269000 35 0 553440 0.261 + 17296 LYPQFMFHL 9 67 606.2999405695684 NaN 0 606.2998046875 PEAK HCD FTMS 0 0 0 18042 578113.4375 0.3578597516101883 9 -0.119598388671875 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 77.98433622928108 0.0036487741833262305 2 PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 40.609 0 0 3.3545 0 0 276.1489000823431 265.13031946353755 541.2792195458807 0 0 0 0 0 2.2689301784845295 0 0 0.4247425010840047 + PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3545 + + 212 + NaN NaN 292051.3 NaN 14311 3731 18042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18045 75.881 NaN 6801100 35 0 1725900 0.261 + -1 KIFNMKDQ 8 128 520.2659919535221 1038.517430973844 2 520.2659301757812 MULTI HCD FTMS 0 0 0 18042 500059.5625 0.6492096327339245 5 -0.07256317138671875 3 Oxidation (M) _KIFNM(Oxidation (M))KDQ_ REV__ENSG00000168491|ENST00000307588|CCDC110;REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110 36.12702656103203 0.2806826090546818 2 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 72.118 0 0 6.9444 0 0 0 125.07213719739595 125.07213719739595 20.85389512741702 0 0 0 0 2.1747425010840047 1.3010299956639813 0 1.1654855311450611 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 6.9444 - 3310 NaN NaN 1139493.2 NaN 14312 3731 18042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18046 75.885 NaN 232210 35 0 23469 0.261 + 26827 SYIEHIFEI 9 68 575.7937622070312 NaN 0 575.7937622070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 58.678817012210395 0.027870599607392636 2 T{M(Oxidation (M))|F}Y{I|L} 4 7 21.714 0 0 1.8889 0 0 375.21488348131135 247.07235132388908 622.2872348052005 0 0 0 0 0 0.7302046884880937 0 0 0 T{M(Oxidation (M))|F}Y{I|L} 1.8889 - 162 + NaN NaN 136533.1 NaN 14313 3731 18042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18047 75.888 NaN 372280 35 0 45343 0.261 + 22280 QPDSYFSVL 9 74 528.2557647443364 1054.4969765554727 2 528.2557373046875 MULTI HCD FTMS 0 0 0 18042 99588.9375 0.20267865473126165 -2 0.0206146240234375 5 Unmodified _QPDSYFSVL_ ENSG00000168397|ENST00000404914|ATG4B;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF;ENST00000494465.5_1_2:242592964-242606150:+|nuORF;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;nc|ENSG00000168397|Q9Y4P1-6|ATG4B 29.84058131909904 0.11198220037953927 2 {M(Oxidation (M))|F}SV{I|L} 4 5 47.467 0 0 4.5014 0 0 590.23344618965 0 590.23344618965 0 21.972353285392643 0 0 0 1.1989700043360187 0 0.805462187404089 0 + {M(Oxidation (M))|F}SV{I|L} 4.5014 + + 144 NaN NaN 146418.2 NaN 14314 3731 18042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18049 75.893 NaN 489590 35 0 57020 0.327 -1 FWCHMNFKV 9 59 409.8520476543721 NaN 0 409.85198974609375 PEAK HCD FTMS 0 0 0 18048 54402.4765625 0.15437387209915943 -10 0.12485504150390625 1 Oxidation (M) _FWCHM(Oxidation (M))NFKV_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22 4.897010918128616 0.2715166107592903 2 {I|L} 1 -1 5.4846 0 0 0.67074 0 0 573.5114092962458 128.07174097232658 701.5831502685724 0 0 0 0 0 0 0 0 0 {I|L} 0.67074 - 5 + NaN NaN 156262.8 NaN 14315 3732 18048 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18051 75.899 NaN 10747000 35 0 1905700 0.327 + 28524 TPQFPDMIL 9 97 539.26788511357 1076.5212172939398 2 539.2681274414062 MULTI HCD FTMS 0 0 0 18050 11625429 0.5968036223539346 -5 0.05294036865234375 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 110.6747026088012 0.0028322563155251486 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 81.714 0 0 7.5905 7.5905 88.01 0 0 0 3.0102999566398125 16.478174818886373 3.0102999566398125 3.0102999566398125 0 1.8494850021680094 0 1.7249073637206092 0.566901560044258 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]T{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]{I|L}T{I|L} 7.5905;7.3109;6.4147;6.0728;5.9289;3.5432;3.0534;2.2234;0.80511 -;+;-;-;-;-;-;-;- + 2042 NaN NaN 879523.6 NaN 14316 3733 18050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18052 75.903 NaN 1500100 35 0 158880 0.261 + 1657 CCPMFYFSII 10 112 612.2690178584618 1222.5234827837235 2 612.2689208984375 MULTI HCD FTMS 0 0 0 18050 942072.125 0.3855982803305904 -3 0.03183746337890625 2 Unmodified _CCPMFYFSII_ REV__ENSG00000103502|ENST00000219789|CDIPT;REV__ENST00000563893.5_1_16:29872371-29874522:-|nuORF;REV__nc|ENSG00000103502|O14735-2|CDIPT 6.2057823575117 0.44245551207394906 2 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 32.536 0 0 2.6614 0 0 627.172655174025 0 627.172655174025 0 0.0649873629158293 0 0 0 0.7614393726401688 0 0 0 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.6614 - 460 NaN NaN 321854.1 NaN 14317 3733 18050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18053 75.907 NaN 1083400 35 0 77168 0.261 -1 0 93 550.2590287363187 1098.5035045394372 2 550.2590942382812 MULTI HCD FTMS 0 0 0 18050 839737.875 0.3365098188350842 -12 0.1474456787109375 3 NaN NaN 2 TPQ{M(Oxidation (M))|F}PDST 8 -1 74.607 0 0 6.7917 0 0 0 222.0881289117797 222.0881289117797 31.943036509604127 0 0 0 0 1.3494850021680094 1.6989700043360187 0.8494850021680094 0.28872548999643577 TPQ{M(Oxidation (M))|F}PDST 6.7917 - 914 + NaN NaN 251271.5 NaN 14318 3733 18050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18054 75.91 NaN 590080 35 0 120550 0.261 + 27684 TAMDVVYAL 9 65 491.749319795964 981.4840866587281 2 491.7494201660156 MULTI HCD FTMS 0 0 0 18050 215589.296875 0.17679773101731294 -3 0.03183746337890625 4 Unmodified _TAMDVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 81.61307344734483 0.005330412723537057 2 [TA]MDVVYA{I|L} 9 0 + 61.59 0 0 6.2752 6.2752 93.08 0 0 0 0.5344087243896922 47.61107503885448 0.5344087243896922 36.53720958383822 0 2.0924778212679485 0 1.4802046884880937 0 + + [TA]MDVVYA{I|L};[TA]MDVV{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 6.2752;2.5526 +;- + 214 NaN NaN 183579.8 NaN 14319 3733 18050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18055 75.913 NaN 377560 35 0 77423 0.261 + 32039 VYPPTQTVI 9 54 509.28442933899476 1016.5543057447895 2 509.284423828125 MULTI HCD FTMS 0 0 0 18050 188578.4375 0.10273124902878315 -19 0.249176025390625 5 Unmodified _VYPPTQTVI_ REV__ENSG00000138709|ENST00000326639|LARP1B;REV__LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant;REV__nc|ENSG00000138709|Q659C4-2|LARP1B;REV__nc|ENSG00000138709|Q659C4-4|LARP1B;REV__nc|ENSG00000138709|Q659C4-9|LARP1B 32.30548876998284 0.10066689432505688 2 NTV{I|L} 4 -1 49.483 0 0 4.8677 0 0 571.3007679669937 0 571.3007679669937 0 39.40395904008959 0 0 0 0.75 0 0.805462187404089 0.3494850021680094 NTV{I|L} 4.8677 - 73 NaN NaN 167976.8 NaN 14320 3733 18050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18057 75.918 NaN 5483000 35 0 1434800 0.327 + 14901 LKVLLPEEV 9 117 520.3234799842348 1038.6324070352696 2 520.3238525390625 MULTI HCD FTMS 0 0 0 18056 345056.84375 0.4642403369829618 -11 0.14099884033203125 1 Unmodified _LKVLLPEEV_ REV__ENSG00000124006|ENST00000404537|OBSL1;REV__ENST00000465149.1_1_2:220420747-220435459:-|nuORF;REV__nc|ENSG00000124006|O75147-1|OBSL1;REV__nc|ENSG00000124006|O75147-4|OBSL1 10.823927491677226 0.26684000660059787 2 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 44.87 0 0 4.3201 0 0 0 125.18698567025821 125.18698567025821 20.043082402780946 0 0 0 0 0 1.3010299956639813 0 0.9163865622122673 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 4.3201 - 2643 NaN NaN 926641.4 NaN 14321 3734 18056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18058 75.922 NaN 1251800 35 0 219540 0.263 -1 0 74 409.18125884364684 408.17398237704685 1 408.8490905761719 MULTI HCD FTMS 0 0 0 18056 34611.265625 0.21002798007735055 1 -0.0093994140625 2 NaN NaN 2 {I|L} 1 -1 15.485 0 0 3.7936 0 0 277.0795590145453 0 277.0795590145453 0 12.385606273598313 0 0 0 0 0 0 0 {I|L} 3.7936 - 12 + NaN NaN 290500 NaN 14322 3734 18056 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18060 75.927 NaN 1268700 35 0 185640 0.327 + 3702 ELSWYNIFL 9 102 592.8026566945545 1183.5907604559088 2 592.8024291992188 MULTI HCD FTMS 0 0 0 18059 1740561.75 0.8580057619414249 6 -0.07515716552734375 1 Unmodified _ELSWYNIFL_ ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467|PTPRB;PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant 39.957323273324995 0.06554068735427583 2 K[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 7 70.084 0 0 5.9213 0 0 177.04234511543126 0 177.04234511543126 0 54.05320604342913 0 0 0 2.1307196863200843 0 0.816901560044258 1.2638793319624577 K[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5.9213 - 951 NaN NaN 283505.2 NaN 14323 3735 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18061 75.932 NaN 1923700 35 0 197260 0.261 + 11354 IYNGKLFDLL 10 116 598.3397450461429 1194.6649371590856 2 598.3397216796875 MULTI HCD FTMS 0 0 0 18059 1350343.125 0.15371089307923524 -10 0.128662109375 2 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 139.78183599554657 4.535006195463608E-07 2 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 97.24 0 0 8.1395 8.1395 88.823 0 0 0 2.8288622833117074 16.53212513775344 2.8288622833117074 2.8288622833117074 0 2.5545970543767123 2 0 0.8609243748081782 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]GGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NGK{I|L}D{I|L}{M(Oxidation (M))|F}{I|L};[Y{I|L}]NGQV{I|L}Y{I|L}{I|L} 8.1395;7.9027;7.3401;7.2159;7.1631;7.1356;6.5729;6.2395;6.0586;5.6652 +;+;-;-;-;-;-;-;-;- + 7724 NaN NaN 402139.1 NaN 14324 3735 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18062 75.935 NaN 328050 35 0 27364 0.261 + 1225 AYLLYSLHL 9 62 546.8081431998717 1091.6017334665432 2 546.8080444335938 MULTI HCD FTMS 0 0 0 18059 293052.125 0.07495953416715459 28 -0.5183181762695312 3 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 85.35673624503755 0.00464763827098139 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 9 0 + 91.621 0 0 8.3933 8.3933 97.911 0 0 0 18.627815773883327 16.478174818886373 16.478174818886373 91.62130946325917 0 2.5752574989159953 1.6989700043360187 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}YS{I|L}H{I|L} 8.3933 + + 125 NaN NaN 159385.3 NaN 14325 3735 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18063 75.938 NaN 746820 35 0 176250 0.261 + 11661 IYVPDIRNVF 10 70 618.3430199316391 1234.6714869300781 2 618.343017578125 MULTI HCD FTMS 0 0 0 18059 423374.28125 0.3639574144386998 -10 0.128662109375 4 Unmodified _IYVPDIRNVF_ ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 26.020703789607367 0.2677231329712098 2 [Y{I|L}]VPD 5 5 51.605 0 0 4.1796 0 0 0 644.3537457508995 644.3537457508995 30.63560569654762 0 0 0 0 1.2396518287104437 1.6989700043360187 0 0 + [Y{I|L}]VPD 4.1796 + + 136 + NaN NaN 210585.9 NaN 14326 3735 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18064 75.942 NaN 584110 35 0 32506 0.261 -1 YNANVNLFCI 10 98 614.2956938928323 1226.5768348524646 2 614.7922973632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _YNANVNLFC(Carbamidomethyl (C))I_ ENSG00000078795|ENST00000508883|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2 20.453626601364224 0.3197956946484955 2 [YN]AERY 6 -1 41.57 0 0 3.3891 0 0 0 427.20065012029585 427.20065012029585 14.457063111435676 0 0 0 0 0.23965182871044374 1.6989700043360187 0 0.7614393726401688 [YN]AERY 3.3891 - 545 NaN NaN 184001.8 NaN 14327 3735 18059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18066 75.946 NaN 79130000 35 0 10930000 0.327 + 13553 KYPENFFLL 9 79 585.8131605635726 1169.6117681939452 2 585.8140258789062 MULTI HCD FTMS 0 0 0 18065 170696688 0.8676982814950392 11 -0.1332855224609375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 117.76058876431921 0.001675465467887476 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 91.487 0 0 7.822 7.822 91.751 0 0 0 9.544161002296946 53.3106753117508 9.544161002296946 9.208187539523749 0 2.4802046884880937 0 0 1.7510912013506126 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KYPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.822;7.0347;6.8836;6.2903;6.1231;6.0963;6.0963;5.9895;5.9542;5.5031 +;-;-;-;-;-;-;-;+;- + 4369 NaN NaN 448065.4 NaN 14328 3736 18065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18067 75.951 NaN 1269700 35 0 209770 0.264 -1 SWLRESREM 9 89 403.86121970501256 1208.5618297152378 3 403.8609313964844 MULTI HCD FTMS 0 0 0 18065 1108735.5 0.6521950510762903 -9 0.11597442626953125 2 Oxidation (M) _SWLRESREM(Oxidation (M))_ ENSG00000153303|ENST00000283309|FRMD1;nc|ENSG00000153303|Q8N878-2|FRMD1 4.5288652416199255 0.31668488241058723 2 {I|L}{I|L} 2 -1 13.812 0 0 1.1429 0 0 964.3646442337546 0 964.3646442337546 0 2.7422750325201424 0 0 0 0 0 0 0 {I|L}{I|L} 1.1429 - 246 NaN NaN 295927.9 NaN 14329 3736 18065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18069 75.956 NaN 571760 35 0 79683 0.327 + 20333 NYQVQFVTL 9 70 556.2926495506944 1110.5707461681886 2 556.2931518554688 MULTI HCD FTMS 0 0 0 18068 290094.65625 0.2441383314024295 -8 0.10251617431640625 1 Unmodified _NYQVQFVTL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 99.75527289724121 0.004270341300239591 2 [YN]QVQ{M(Oxidation (M))|F}VT{I|L} 9 0 + 88.95 0 0 8.0094 8.0094 92.072 0 0 0 5.6424927368725974 74.97093142085326 5.6424927368725974 9.208187539523749 0 2.4247425010840047 0 0.3054621874040891 1.0044321917401078 + + [YN]QVQ{M(Oxidation (M))|F}VT{I|L};[YN][AG]VQ{M(Oxidation (M))|F}VT{I|L};[YN]QV[AG]{M(Oxidation (M))|F}VT{I|L};[YN][AG]V[AG]{M(Oxidation (M))|F}VT{I|L};[YG]GQVQ{M(Oxidation (M))|F}VT{I|L};[YG]GQV[AG]{M(Oxidation (M))|F}VT{I|L};[YN]QVQ{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[YN][AG]VQ{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[YN]QV[AG]{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[YN]QVQ{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 8.0094;7.1803;7.1803;6.3551;5.7744;4.9492;4.6482;3.819;3.819;3.4968 +;-;-;-;-;-;-;-;-;- + 325 NaN NaN 180636.6 NaN 14330 3737 18068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18070 75.96 NaN 1003500 35 0 60452 0.261 + 10196 IFYQGFSDLL 10 93 601.8084615813646 1201.602370229529 2 602.3092041015625 MULTI HCD FTMS 0 0 0 18068 365678.90625 0.40885084706298996 8 -0.09833526611328125 2 Unmodified _IFYQGFSDLL_ REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5 32.30548876998284 0.21217886106551395 2 G[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 56.522 0 0 4.7039 0 0 266.12657363105626 0 266.12657363105626 0 29.627209750944626 0 0 0 2.079689690656103 0 0.5796896906561032 0.6307196863200843 G[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.7039 - 3392 NaN NaN 252808.1 NaN 14331 3737 18068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18071 75.963 NaN 444270 35 0 43397 0.261 + 35641 YYIFIPSKF 9 73 589.3179321289062 NaN 0 589.3179321289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 36.506200033944 0.08948014603198573 2 Y{I|L}P 3 6 15.199 0 0 1.2918 0 0 163.05412167793116 637.3231905572874 800.3773122352186 0 0 0 0 0 0.9247425010840047 0 0 0 Y{I|L}P 1.2918 - 74 + NaN NaN 161697 NaN 14332 3737 18068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18072 75.967 NaN 356230 35 0 26439 0.261 + 18225 MPDPWAEFHL 10 97 629.7818603515625 NaN 0 629.7818603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 71.92227651296345 0.022719976497769596 2 PDP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{M(Oxidation (M))|F} 7 3 27.3 0 0 2.1708 0 0 147.0329639630873 265.1307467096313 412.1637106727186 0 0 0 0 0 1.6989700043360187 0 0 0 + PDP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{M(Oxidation (M))|F} 2.1708 + + 193 + NaN NaN 154069.8 NaN 14333 3737 18068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18074 75.972 NaN 605640 35 0 73475 0.327 + 14801 LINDADWEL 9 72 544.7664562048983 NaN 0 544.7647705078125 PEAK HCD FTMS 0 0 0 18073 126802.2890625 0.5401747016136456 -4 0.05352783203125 1 Unmodified _LINDADWEL_ ENSG00000167118|ENST00000372853|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF;nc|ENSG00000167118|Q9BTM9-2|URM1 51.629811660486645 0.04111961458024335 2 EWD 3 8 29.539 0 0 2.7162 0 0 131.09679080171924 523.256233011219 654.3530238129383 0 0 0 0 0 1.305462187404089 0 0.6307196863200843 0 EWD 2.7162 - 119 + NaN NaN 183085.1 NaN 14334 3738 18073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18075 75.976 NaN 337200 35 0 31028 0.261 + 8318 GYAHWIGLF 9 73 532.2716674804688 NaN 0 532.2716674804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _GYAHWIGLF_ ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1 28.173230860318316 0.13253774575595106 2 {I|L}G[HQ]CD 6 8 24.614 0 0 2.3166 0 0 165.0792469140353 241.15566431217033 406.23491122620567 0 0 0 0 0 0.9247425010840047 0 0.6861818737241735 0 {I|L}G[HQ]CD 2.3166 - 416 + NaN NaN 132173.1 NaN 14335 3738 18073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18076 75.979 NaN 118790 35 0 12622 0.261 -1 0 46 574.0399780273438 NaN 0 574.0399780273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 S 1 -1 5.4846 0 0 0.47855 0 0 218.61062636543107 837.3919161432249 1056.002542508656 0 0 0 0 0 0 0 0 0 S 0.47855 - 9 + NaN NaN 111274.5 NaN 14336 3738 18073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18078 75.984 NaN 830280 35 0 133270 0.327 -1 FPQYVMDVL 9 74 564.2757690627782 1126.5369851923563 2 564.2753295898438 MULTI HCD FTMS 0 0 0 18077 512078.46875 0.6416506298168796 -4 0.05670928955078125 1 Oxidation (M) _FPQYVM(Oxidation (M))DVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 31.26834338654808 0.10542797264966089 2 [VS]WYV{M(Oxidation (M))|F}DV{I|L} 9 -1 + 53.096 0 0 4.7132 4.7132 84.044 0 0 0 3.65279269351241 35.13682493045401 3.65279269351241 5.228787452803374 0 1.3252574989159953 0 0 0 [VS]WYV{M(Oxidation (M))|F}DV{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[PA]YV{M(Oxidation (M))|F}DV{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}[W{I|L}]{I|L}{[CT]|[{M(Oxidation (M))|F}G]};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}V{[TV]|[{I|L}S]}[WM];{[CT]|[{M(Oxidation (M))|F}G]}EVV{M(Oxidation (M))|F}CDV{I|L};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}V{[WT]|[RM]}{[ET]|[MV]};[Y{I|L}]{[ES]|[DT]|[{I|L}C]}[W{I|L}]S{[ET]|[MV]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[DV]{M(Oxidation (M))|F}CDV{I|L} 4.7132;4.249;2.3386;2.2956;2.0989;1.8721;1.7588;1.7457 -;-;-;-;-;-;-;- 483 NaN NaN 226749.9 NaN 14337 3739 18077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18079 75.989 NaN 538490 35 0 100920 0.262 -1 IWTRWRTCMK 10 54 485.24529923629177 1452.7140683090754 3 485.5800476074219 MULTI HCD FTMS 0 0 0 18077 220694.96875 0.40459315129816614 1 -0.00933837890625 2 Carbamidomethyl (C),Oxidation (M) _IWTRWRTC(Carbamidomethyl (C))M(Oxidation (M))K_ ENST00000591090.5_1_19:12858365-12858820:+|nuORF 8.444304893310646 0.4306066564229251 2 {I|L}W[KQ]D 5 -1 48.684 0 0 3.3513 0 0 0 779.3283785455686 779.3283785455686 32.48651242028323 0 0 0 0 0.5 1.6989700043360187 0.9247425010840047 0 {I|L}W[KQ]D 3.3513 - 37 + NaN NaN 173050.8 NaN 14338 3739 18077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18081 75.993 NaN 2593300 35 0 234840 0.327 + 6753 FPQKFIDLL 9 122 560.8236676243027 1119.6327823154054 2 560.8239135742188 MULTI HCD FTMS 0 0 0 18080 2783028.25 0.586252867907068 4 -0.044708251953125 1 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 149.91393105778798 8.917243180786556E-06 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 88.069 0 0 7.8658 7.8658 90.061 0 0 0 20.451140161145332 6.830984399557423 6.830984399557423 6.830984399557423 0 2.024227503252014 1.3010299956639813 1.2510912013506126 0.2742275032520141 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}V{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}VE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}V{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{I|L}{M(Oxidation (M))|F}V{I|L}E;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}VE{I|L};{M(Oxidation (M))|F}PQK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 7.8658;7.2557;7.0434;6.898;6.7545;6.6884;6.4333;6.0783;6.0756;6.0392 +;-;-;-;-;-;-;-;-;+ + 3026 NaN NaN 453331.9 NaN 14339 3740 18080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18082 75.998 NaN 1550500 35 0 645990 0.261 -1 CQTCWQASF 9 74 565.7236623120219 1129.4327716908438 2 565.723876953125 MULTI HCD FTMS 0 0 0 18080 373962.34375 0.35135860989852913 -9 0.119598388671875 2 Carbamidomethyl (C) _CQTC(Carbamidomethyl (C))WQASF_ ENSG00000086102|ENST00000379540|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;nc|ENSG00000086102|Q12986-2|NFX1;nc|ENSG00000086102|Q12986-3|NFX1 7.289230182591677 0.29575926068275815 2 {I|L}S{M(Oxidation (M))|F} 3 -1 25.93 0 0 2.2958 0 0 764.2382964484594 0 764.2382964484594 0 7.984550065040278 0 0 0 0 0 0.2742275032520141 0 {I|L}S{M(Oxidation (M))|F} 2.2958 - 109 + NaN NaN 319933.2 NaN 14340 3740 18080 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18084 76.002 NaN 482930 35 0 149900 0.327 -1 LGGFSSCL 8 45 413.19348905816895 824.3724251831379 2 413.19354248046875 MULTI HCD FTMS 0 0 0 18083 396511.15625 0.6729452438037266 3 -0.0355987548828125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LGGFSSCL_ ENST00000583473.5_1_17:63133595-63133637:+|nuORF 2.577480529830294 0.5381683276125971 2 P 1 -1 4.6041 0 0 0.5585 0 0 173.10603893138483 551.1851290338499 724.2911679652348 0 0 0 0 0 0 0 0 0 P 0.5585 - 2 + NaN NaN 175744.4 NaN 14341 3741 18083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18085 76.007 NaN 1153000 35 0 497320 0.261 + 17297 LYPQFMFHL 9 73 606.2999405695684 NaN 0 606.3001098632812 PEAK HCD FTMS 0 0 0 18083 749674.125 0.4640580528991514 19 -0.36159515380859375 2 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 60.38955033654506 0.02465517696295926 2 {M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 34.029 0 0 2.8109 0 0 129.1176720506797 412.1992586725219 541.3169307232016 0 0 0 0 0 1.305462187404089 0 0 0.3807196863200844 {M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8109 - 140 + NaN NaN 268735.2 NaN 14342 3741 18083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18086 76.01 NaN 5528700 35 0 1394300 0.261 + -1 KIFNMKDQ 8 135 520.2659236170059 1038.5172943008117 2 520.2665405273438 MULTI HCD FTMS 0 0 0 18083 523591.875 0.6909712926071622 3 -0.0355987548828125 3 Oxidation (M) _KIFNM(Oxidation (M))KDQ_ REV__ENSG00000168491|ENST00000307588|CCDC110;REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110 43.85829265575387 0.18136530125488975 2 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 -1 73.989 0 0 7.1245 0 0 0 125.07187890452634 125.07187890452634 29.328519617103296 0 0 0 0 2.1307196863200843 1.3010299956639813 0.2302046884880938 1.1663865622122673 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7.1245 - 2543 NaN NaN 943794.7 NaN 14343 3741 18083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18088 76.015 NaN 216190 35 0 9595.6 0.411 + 12401 KPGKGARAE 9 88 457.2642804947058 912.5140080562117 2 457.26434326171875 MULTI HCD FTMS 0 0 0 18087 249382.171875 0.331704350189914 -13 0.16176605224609375 1 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 W 1 9 11.42 0 0 1.2515 0 0 708.4238876722258 0 708.4238876722258 0 0.16092341685700617 0 0 0 0 0 0 0 W 1.2515 - 145 + NaN NaN 177599.8 NaN 14344 3742 18087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18090 76.022 NaN 11822000 35 0 2176600 0.327 + 28525 TPQFPDMIL 9 78 539.26788511357 1076.5212172939398 2 539.26806640625 MULTI HCD FTMS 0 0 0 18089 12815905 0.6579179596506849 5 -0.07330322265625 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 103.41943736471063 0.004016698775839292 2 [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 82.258 0 0 7.6411 7.6411 87.313 0 0 0 1.1471309210214287 16.47817481888636 1.1471309210214287 1.1471309210214287 0 2.089136830878453 0 1.781234684152075 0.2742275032520141 + + [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]T{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]{I|L}T{I|L} 7.6411;7.5345;6.531;6.3247;6.1187;3.7843;3.276;2.5082;0.99989 +;-;-;-;-;-;-;-;- + 1231 NaN NaN 639073.2 NaN 14345 3743 18089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18091 76.027 NaN 1511900 35 0 141890 0.261 + 1658 CCPMFYFSII 10 104 612.2690178584618 1222.5234827837235 2 612.2691650390625 MULTI HCD FTMS 0 0 0 18089 803959.4375 0.32906756110159696 7 -0.0950927734375 2 Unmodified _CCPMFYFSII_ REV__ENSG00000103502|ENST00000219789|CDIPT;REV__ENST00000563893.5_1_16:29872371-29874522:-|nuORF;REV__nc|ENSG00000103502|O14735-2|CDIPT 6.2057823575117 0.44245551207394906 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 33.193 0 0 2.7151 0 0 684.2075258231412 0 684.2075258231412 0 7.917796943586875 0 0 0 1.079689690656103 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.7151 - 459 NaN NaN 322173.1 NaN 14346 3743 18089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18092 76.03 NaN 973210 35 0 236200 0.261 + 9737 HYALNTWLF 9 79 582.7960912666654 1163.5776296001306 2 582.79638671875 MULTI HCD FTMS 0 0 0 18089 339236.9375 0.3898431603736318 -3 0.0289306640625 3 Unmodified _HYALNTWLF_ ENSG00000170881|ENST00000303545|RNF139 65.23502041540118 0.010630085227462206 2 NTW{I|L}{M(Oxidation (M))|F} 5 4 71.414 0 0 6.1375 0 0 484.24189955879064 0 484.24189955879064 0 65.92986265876426 0 0 0 2.110924374808178 0 0.805462187404089 0.5796896906561032 + NTW{I|L}{M(Oxidation (M))|F} 6.1375 + + 242 NaN NaN 253207.6 NaN 14347 3743 18089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18093 76.033 NaN 510210 35 0 38581 0.261 + 14815 LISTIPSLLH 10 75 547.3325367317575 NaN 0 547.3326416015625 PEAK HCD FTMS 0 0 0 18089 324262.75 0.7385566127720429 -1 0.00737762451171875 4 Unmodified _LISTIPSLLH_ REV__ENST00000478660.6_1_6:45389954-45390311:+|nuORF 10.823927491677226 0.33092050725491123 2 H{I|L}SY{I|L}{I|L} 6 -1 27.172 0 0 2.4868 0 0 132.14196791315845 231.07734094791252 363.219308861071 0 0 0 0 0 0 0 0.3807196863200844 0 H{I|L}SY{I|L}{I|L} 2.4868 - 88 + NaN NaN 167667.4 NaN 14348 3743 18089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18095 76.038 NaN 1330900 35 0 91129 0.327 -1 0 95 550.2590287363187 1098.5035045394372 2 550.2593994140625 MULTI HCD FTMS 0 0 0 18094 668309.8125 0.2678131124311668 -1 0.015777587890625 1 NaN NaN 2 TPQ{M(Oxidation (M))|F}PDST 8 -1 69.717 0 0 6.3465 0 0 0 222.08797632388908 222.08797632388908 20.745948527819394 0 0 0 0 1.305462187404089 1.6989700043360187 0.8494850021680094 0.2742275032520141 TPQ{M(Oxidation (M))|F}PDST 6.3465 - 1140 + NaN NaN 300958 NaN 14349 3744 18094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18096 76.043 NaN 718730 35 0 153190 0.261 + 27685 TAMDVVYAL 9 68 491.749319795964 981.4840866587281 2 491.7493591308594 MULTI HCD FTMS 0 0 0 18094 502880.625 0.41239595268088713 8 -0.1179962158203125 2 Unmodified _TAMDVVYAL_ ENSG00000158406|ENST00000377727|H4C8;ENSG00000197061|ENST00000377803|H4C3;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197837|ENST00000539745|H4C16;ENSG00000270276|ENST00000579512|H4C15;ENSG00000270882|ENST00000578186|H4C14;ENSG00000273542|ENST00000611927|H4C12;ENSG00000274618|ENST00000244537|H4C6;ENSG00000275126|ENST00000618305|H4C13;ENSG00000276180|ENST00000615353|H4C9;ENSG00000276966|ENST00000615164|H4C5;ENSG00000277157|ENST00000614247|H4C4;ENSG00000278637|ENST00000617569|H4C1;ENSG00000278705|ENST00000377745|H4C2 70.71552829651908 0.008856681705782516 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP]VYA 7 5 63.389 0 0 6.4585 0 0 0 128.07074492416737 128.07074492416737 46.01119307932667 0 0 0 0 1.4247425010840047 1.5228787452803376 1.4916440611282624 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP]VYA 6.4585 - 261 NaN NaN 202129.7 NaN 14350 3744 18094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18097 76.046 NaN 1137700 35 0 281770 0.261 + 6909 FPVEVNTVL 9 55 509.28442933899476 1016.5543057447895 2 509.2843322753906 MULTI HCD FTMS 0 0 0 18094 583129.5 0.3176695208354869 -8 0.09174346923828125 3 Unmodified _FPVEVNTVL_ ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 32.78568957990786 0.09846250359632436 2 NTV{I|L} 4 5 58.686 0 0 5.773 0 0 571.3013124041842 0 571.3013124041842 0 51.695925227640984 0 0 0 1.5 0 0.8494850021680094 0.3252574989159953 + NTV{I|L} 5.773 + + 83 NaN NaN 257787.9 NaN 14351 3744 18094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18098 76.049 NaN 493410 35 0 163070 0.261 + 19118 NFIKQYWQF 9 52 637.321972016172 1272.629391099144 2 637.3208618164062 MULTI HCD FTMS 0 0 0 18094 352476.15625 0.5519744551648484 -1 0.015777587890625 4 Unmodified _NFIKQYWQF_ ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3 1.844237919475145 0.33703635659052655 2 {I|L}{M(Oxidation (M))|F}AA 4 8 10.177 0 0 0.79971 0 0 852.42733137477 0 852.42733137477 0 1.2248627423174678 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}AA 0.79971 - 58 NaN NaN 174831 NaN 14352 3744 18094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18100 76.054 NaN 1104100 35 0 134790 0.327 + 4407 EYEGKWLLF 9 99 592.8026566945545 1183.5907604559088 2 592.8025512695312 MULTI HCD FTMS 0 0 0 18099 1277383.375 0.6296830870597863 16 -0.336090087890625 1 Unmodified _EYEGKWLLF_ ENSG00000162607|ENST00000339950|USP1 71.92227651296345 0.008466197542043549 2 DKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7 7 52.867 0 0 4.4667 0 0 288.11140639472814 0 288.11140639472814 0 27.408136586244503 0 0 0 1.4247425010840047 0 0.3054621874040891 0.8539171939081173 DKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.4667 - 979 NaN NaN 260571.8 NaN 14353 3745 18099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18102 76.06 NaN 6163000 35 0 866180 0.327 + 11355 IYNGKLFDLL 10 114 598.3397450461429 1194.6649371590856 2 598.340087890625 MULTI HCD FTMS 0 0 0 18101 5216664 0.5938180211302188 1 -0.01877593994140625 1 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 176.4269993864032 3.3074236493791942E-12 2 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 118.96 0 0 9.9579 9.9579 92.036 0 0 0 6.182882441271374 16.53212513775344 6.182882441271374 6.182882441271374 0 2.885151878060192 2 0.3054621874040891 1.591129063296272 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}KGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[YN]{I|L}GK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[KG]NY{I|L}{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}{I|L}D{M(Oxidation (M))|F}{I|L} 9.9579;9.4404;9.1908;8.6733;8.3962;7.7157;7.6291;7.4099;7.3473;7.3011 +;+;-;-;-;-;-;-;-;- + 12197 NaN NaN 488737.8 NaN 14354 3746 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18103 76.065 NaN 1183300 35 0 324580 0.261 + 11662 IYVPDIRNVF 10 80 618.3430199316391 1234.6714869300781 2 618.3427124023438 MULTI HCD FTMS 0 0 0 18101 527363.3125 0.45335249727649357 1 -0.01877593994140625 2 Unmodified _IYVPDIRNVF_ ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 35.61225514009592 0.18348312004207498 2 [Y{I|L}]VPD{I|L}RNV{M(Oxidation (M))|F} 10 0 + 68.778 0 0 5.5706 5.5706 87.067 0 0 0 15.762743881329513 55.24613421077092 15.762743881329513 9.164539485499255 0 1.8935078169319297 1.6989700043360187 0 0 + + [Y{I|L}]VPD{I|L}RNV{M(Oxidation (M))|F};[Y{I|L}]VPD{I|L}RGGV{M(Oxidation (M))|F};[Y{I|L}]VEE[RK]{I|L}W;[Y{I|L}]VEE[W{I|L}][RK] 5.5706;4.8283;1.7816;1.731 +;-;-;- + 327 NaN NaN 273765.5 NaN 14355 3746 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18104 76.068 NaN 4742700 35 0 1162500 0.262 + 10461 IPDILVEIK 9 123 520.3234799842348 1038.6324070352696 2 520.3235473632812 MULTI HCD FTMS 0 0 0 18101 392038.03125 0.5274489436572345 1 -0.01877593994140625 3 Unmodified _IPDILVEIK_ tr|U7STY6|U7STY6_FUSNURNApolymerasesigmafactor54core-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01233PE=4SV=1 18.373094154950223 0.20161688160436167 2 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 7 7 51.985 0 0 5.0051 0 0 0 125.18697644365524 125.18697644365524 18.06167470929624 0 0 0 0 0 1.3979400086720375 0 1.4060383909227112 [EP]N{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L} 5.0051 - 2560 NaN NaN 819661.8 NaN 14356 3746 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18105 76.072 NaN 541790 35 0 173370 0.261 -1 ASLHGQIYCKP 11 55 637.321972016172 1272.629391099144 2 637.322998046875 MULTI HCD FTMS 0 0 0 18101 436935.46875 0.6842369704418237 1 -0.01877593994140625 4 Carbamidomethyl (C) _ASLHGQIYC(Carbamidomethyl (C))KP_ ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2;nc|ENSG00000163092|A4UGR9-7|XIRP2 2.735195868890462 0.4069250265843076 2 {I|L}{M(Oxidation (M))|F}AA 4 -1 10.177 0 0 0.79971 0 0 852.4279848351425 0 852.4279848351425 0 1.2248627423174678 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}AA 0.79971 - 44 NaN NaN 169951.1 NaN 14357 3746 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18106 76.075 NaN 1224800 35 0 239080 0.264 + 1828 CSHVEFGMWK 10 67 408.51500209880055 NaN 0 408.51483154296875 PEAK HCD FTMS 0 0 0 18101 151625.203125 0.24215343084337854 1 -0.01877593994140625 5 Unmodified _CSHVEFGMWK_ ENSG00000185829|ENST00000336125|ARL17A;ENSG00000228696|ENST00000450673|ARL17B;nc|ENSG00000228696|Q8IVW1-4|ARL17A 6.2057823575117 0.3348729994311477 2 {M(Oxidation (M))|F} 1 9 3.0989 0 0 0.38023 0 0 548.8746564419387 116.05050836734608 664.9251648092848 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.38023 + + 6 + NaN NaN 276062.1 NaN 14358 3746 18101 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18108 76.08 NaN 76179000 35 0 9350100 0.327 + 13554 KYPENFFLL 9 90 585.8131605635726 1169.6117681939452 2 585.8140869140625 MULTI HCD FTMS 0 0 0 18107 85769376 0.4359893623718222 22 -0.53619384765625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.978 0 0 8.2914 8.2914 91.301 0 0 0 8.310384486277798 16.478174818886373 8.310384486277798 8.310384486277798 0 2.555462187404089 0 0.3054621874040891 2.0743923658886185 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.2914;7.5809;7.5042;6.7936;6.77;6.5468;6.44;6.3515;6.0595;6.0113 +;-;-;-;-;-;-;-;-;- + 6317 NaN NaN 598223.6 NaN 14359 3747 18107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18109 76.084 NaN 839740 35 0 140650 0.264 + 14303 LDFPMSEKNQ 10 67 403.52693767984624 NaN 0 403.5268859863281 PEAK HCD FTMS 0 0 0 18107 190233.0625 0.10690137940345405 11 -0.22241973876953125 2 Unmodified _LDFPMSEKNQ_ FAM135B|p.L1174P|1|0.24|ENSG00000147724|chr8:138145978-138145978|A/G|missense_variant 8.155526934196011 0.33320428830121973 2 {M(Oxidation (M))|F} 1 9 3.9794 0 0 0.49431 0 0 170.83718727199874 484.1372469537719 654.9744342257707 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.49431 + + 6 + NaN NaN 223036.9 NaN 14360 3747 18107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18110 76.088 NaN 373110 35 0 25313 0.261 -1 YNAMCVERIL 10 83 614.2956938928323 1226.5768348524646 2 614.7930908203125 MULTI HCD FTMS 0 0 0 18107 79863.0546875 0.09444951975066328 -14 0.18038177490234375 3 Oxidation (M) _YNAM(Oxidation (M))CVERIL_ ENST00000438300.1_1_2:133070568-133076306:+|nuORF 15.847184025352803 0.36288280428275715 2 [YN]A 3 -1 35.062 0 0 2.8585 0 0 0 875.4106110577958 875.4106110577958 -0.8019813526458179 0 -0.8019813526458179 0 0 0 1.6989700043360187 0 0.7614393726401688 [YN]A 2.8585 + + 503 NaN NaN 144269.8 NaN 14361 3747 18107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18111 76.091 NaN 216490 35 0 17533 0.262 + 14617 LFSSDTWSL 9 65 528.2557647443364 1054.4969765554727 2 528.2537231445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LFSSDTWSL_ REV__ENST00000508014.5_1_4:17585059-17587679:+|nuORF 11.640296217721598 0.25978676193971967 2 C(Carbamidomethyl (C))V{I|L} 3 -1 23.188 0 0 2.1989 0 0 664.2819691388687 0 664.2819691388687 0 8.58349385648225 0 0 0 0 0 0 0 C(Carbamidomethyl (C))V{I|L} 2.1989 - 65 NaN NaN 120245.5 NaN 14362 3747 18107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18113 76.096 NaN 940880 35 0 97482 0.327 + 20334 NYQVQFVTL 9 108 556.2926495506944 1110.5707461681886 2 556.2933349609375 MULTI HCD FTMS 0 0 0 18112 456646.4375 0.3843052496494024 3 -0.037811279296875 1 Unmodified _NYQVQFVTL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 149.91393105778798 8.917243180786556E-06 2 [YN]QVQ{M(Oxidation (M))|F}VT{I|L} 9 0 + 99.693 0 0 8.9767 8.9767 92.707 0 0 0 15.10644288863324 76.21531340953061 15.10644288863324 9.208187539523735 0 2.589136830878453 1.0969100130080565 0.2742275032520141 1.1496498648046138 + + [YN]QVQ{M(Oxidation (M))|F}VT{I|L};[YN][AG]VQ{M(Oxidation (M))|F}VT{I|L};[YN]QV[AG]{M(Oxidation (M))|F}VT{I|L};[YN][AG]V[AG]{M(Oxidation (M))|F}VT{I|L};[YN]QVQ[{I|L}V]T{M(Oxidation (M))|F};[YN]QVQ{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F};[YN]QV[AG][{I|L}V]T{M(Oxidation (M))|F};[YN][AG]VQ[{I|L}V]T{M(Oxidation (M))|F};[YN][AG]VQ{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F};[YN]QV[AG]{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F} 8.9767;8.1476;8.1476;7.3224;3.9067;3.8282;3.0776;3.0776;2.9991;2.9991 +;-;-;-;-;-;-;-;-;- + 1376 NaN NaN 238072.5 NaN 14363 3748 18112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18114 76.1 NaN 483070 35 0 51911 0.261 + 24765 RYNVPFLTF 9 82 578.8120442761668 NaN 0 578.8119506835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RYNVPFLTF_ ENSG00000168827|ENST00000486715|GFM1;nc|ENSG00000168827|Q96RP9-2|GFM1 43.85829265575387 0.06590164363483184 2 TT{I|L}M{I|L} 5 8 39.993 0 0 3.4608 0 0 64.02026949234285 529.2523674219253 593.2726369142682 0 0 0 0 0 1.805462187404089 0 0 0 TT{I|L}M{I|L} 3.4608 - 93 + NaN NaN 164012.5 NaN 14364 3748 18112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18116 76.105 NaN 691100 35 0 39529 0.327 + 14612 LFSFESGRRC 10 96 601.2930322622544 1200.5715115913088 2 601.8079223632812 MULTI HCD FTMS 0 0 0 18115 90565.3828125 1 0 0 1 Unmodified _LFSFESGRRC_ ENSG00000137218|ENST00000373018|FRS3;ENSG00000166225|ENST00000549921|FRS2 13.042465956692817 0.38911719078024076 2 {I|L}ND[CS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 8 24.231 0 0 2.0183 0 0 130.06475733228336 0 130.06475733228336 0 8.657976248191062 0 0 0 0.3054621874040891 0 0.2742275032520141 0.5994850021680094 {I|L}ND[CS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.0183 - 1518 + NaN NaN 209846.7 NaN 14365 3749 18115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18117 76.109 NaN 968790 35 0 111050 0.261 + 24632 RYLQDLLAW 9 84 589.3202632053724 1176.6259734775447 2 589.8231201171875 MULTI HCD FTMS 0 0 0 18115 438557.40625 0.33706609021947453 -7 0.0899810791015625 2 Unmodified _RYLQDLLAW_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant 41.95555342248728 0.056367691549927025 2 [Y{I|L}]RQD{I|L}{I|L}AW 9 2 + 70.046 0 0 5.9531 5.9531 89.126 0 0 0 10.02026962941384 33.454486391123666 10.02026962941384 9.208187539523756 0 2.6861818737241734 1.2218487496163564 0.4247425010840047 0 [Y{I|L}]RQD{I|L}{I|L}AW;[Y{I|L}]R[AG]D{I|L}{I|L}AW;[Y{I|L}]R[PS][TA]{I|L}AW;C(Carbamidomethyl (C))[HK][H{I|L}]{I|L}{I|L}AW;[Y{I|L}]RQD{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};YY{I|L}{I|L}[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}[HV]HH{M(Oxidation (M))|F};YY{I|L}{I|L}[KA]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]R[AG]D{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]Y{I|L}[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.9531;5.1705;4.4193;3.5507;2.999;2.6102;2.4228;2.4217;2.2164;1.1619 -;-;-;-;-;-;-;-;-;- 634 NaN NaN 243229.7 NaN 14366 3749 18115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18118 76.113 NaN 958660 35 0 125320 0.262 + 1058 AYGNVFSAF 9 76 488.232197937976 974.4498429427521 2 488.7338562011719 MULTI HCD FTMS 0 0 0 18115 151923.71875 0.3150707499098351 -7 0.0899810791015625 3 Unmodified _AYGNVFSAF_ ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 65.23502041540118 0.010630085227462206 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 3 + 62.598 0 0 6.4239 6.4239 92.389 0 0 0 10.915149811213496 30.361753205006607 10.915149811213496 23.28289602552414 0 2.1747425010840047 0 0.3252574989159953 1.3494850021680094 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[HA]{[TV]|[{I|L}S]}SA{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[EP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[NP] 6.4239;4.0346;0.36088 -;-;- 199 NaN NaN 235656 NaN 14367 3749 18115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18120 76.117 NaN 994730 35 0 88563 0.327 + 6754 FPQKFIDLL 9 94 560.8236676243027 1119.6327823154054 2 560.823974609375 MULTI HCD FTMS 0 0 0 18119 1073111.875 0.22605408849295044 14 -0.35767364501953125 1 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 92.65332237495696 0.004456439685314431 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 75.484 0 0 6.7418 6.7418 88.592 0 0 0 19.24742501084004 16.478174818886366 16.478174818886366 8.252574989159939 0 1.524227503252014 1.3979400086720375 1.064909327626439 0.2302046884880938 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{I|L}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KEV{M(Oxidation (M))|F}{I|L}{I|L};[QP]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};[QP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}KQP{M(Oxidation (M))|F}{I|L};[QP]K{M(Oxidation (M))|F}EV{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}KEV{M(Oxidation (M))|F}{I|L}{I|L} 6.7418;6.0048;5.9194;5.1869;5.1823;5.0227;4.976;4.8041;4.7322;4.6855 +;-;-;-;-;-;-;-;-;- + 1920 NaN NaN 245023.5 NaN 14368 3750 18119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18121 76.122 NaN 781540 35 0 205230 0.261 + -1 LRCTCFCV 8 80 558.2420201686404 NaN 0 558.2416381835938 PEAK HCD FTMS 0 0 0 18119 181803.96875 0.34081423861935756 1 -0.016021728515625 2 3 Carbamidomethyl (C) _LRC(Carbamidomethyl (C))TC(Carbamidomethyl (C))FC(Carbamidomethyl (C))V_ REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF 11.640296217721598 0.38822285293237185 2 G 1 -1 3.9794 0 0 0.35707 0 0 892.3692351841572 162.0560244195922 1054.4252596037495 0 0 0 0 0 0 0 0 0 G 0.35707 - 31 + NaN NaN 210394.8 NaN 14369 3750 18119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18122 76.125 NaN 228710 35 0 18138 0.262 + 16668 LWIMIALA 8 68 465.7774943895481 929.5404358458962 2 465.77764892578125 MULTI HCD FTMS 0 0 0 18119 124140.2734375 0.18251653220822886 -6 0.079315185546875 3 Unmodified _LWIMIALA_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 2.8892196856762586 0.5377058178582064 2 [W{I|L}]{M(Oxidation (M))|F} 3 5 15.708 0 0 1.6899 0 0 0 480.32813050825877 480.32813050825877 13.718486342062192 0 0 0 0 0 1.0457574905606752 0 0 + [W{I|L}]{M(Oxidation (M))|F} 1.6899 + + 19 NaN NaN 131210.3 NaN 14370 3750 18119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18123 76.129 NaN 284960 35 0 52820 0.261 + -1 IWCSRRKMLMG 11 43 485.24529923629177 1452.7140683090754 3 485.2452087402344 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C),Oxidation (M) _IWC(Carbamidomethyl (C))SRRKM(Oxidation (M))LMG_ REV__ENST00000289734.11_1_8:41556976-41559097:-|nuORF 4.715918219556657 0.3982382512160552 2 V{I|L} 2 -1 20.969 0 0 1.4434 0 0 1222.5500633397446 0 1222.5500633397446 0 10 0 0 0 0 0 0 0 V{I|L} 1.4434 - 14 NaN NaN 130263 NaN 14371 3750 18119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18125 76.134 NaN 561580 35 0 104140 0.327 -1 FPQYVMDVL 9 58 564.2757690627782 1126.5369851923563 2 564.2760009765625 MULTI HCD FTMS 0 0 0 18124 384370.09375 0.4816279687359156 8 -0.2013092041015625 1 Oxidation (M) _FPQYVM(Oxidation (M))DVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 21.536976647645854 0.1742816388551942 2 {M(Oxidation (M))|F}DV{I|L} 4 -1 44.68 0 0 3.9662 0 0 634.3113052585147 0 634.3113052585147 0 25.38364391835536 0 0 0 0.9247425010840047 0 0.3494850021680094 0 {M(Oxidation (M))|F}DV{I|L} 3.9662 + + 106 NaN NaN 174466 NaN 14372 3751 18124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18126 76.138 NaN 1002000 35 0 158030 0.261 + 24633 RYLQDLLAW 9 100 589.3202632053724 1176.6259734775447 2 589.3200073242188 MULTI HCD FTMS 0 0 0 18124 399063.875 0.15729880185287248 -5 0.07257080078125 2 Unmodified _RYLQDLLAW_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant 57.72198328787511 0.020768266150574023 2 [Y{I|L}]RQD{I|L}{I|L}AW 9 2 + 66.907 0 0 5.6864 5.6864 88.044 0 0 0 1.4608721583388444 24.29515381062835 1.4608721583388444 9.208187539523749 0 2.579689690656103 0 0.4247425010840047 0.3252574989159953 [Y{I|L}]RQD{I|L}{I|L}AW;[Y{I|L}]R[AG]D{I|L}{I|L}AW;[Y{I|L}]R[PS][TA]{I|L}AW;{[CT]|[{M(Oxidation (M))|F}G]}A{I|L}{I|L}{[CA]|SS}{I|L}{I|L}A[VS];{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}{[CA]|SS}{I|L}{I|L}A{[DA]|[EG]};{[QV]|[N{I|L}]|[RA]|[KV]}HH{[CA]|SS}{I|L}{I|L}AW;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}[HV]HH{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}[HV]{M(Oxidation (M))|F}HH;[Y{I|L}]R[PS]Q[{I|L}P]G{M(Oxidation (M))|F};[Y{I|L}]RQ[PS][{I|L}P]G{M(Oxidation (M))|F} 5.6864;4.9038;3.7119;3.4516;3.3315;2.391;2.3091;2.3091;0.14109;0.14109 -;-;-;-;-;-;-;-;-;- 1303 NaN NaN 244991.1 NaN 14373 3751 18124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18127 76.141 NaN 1297700 35 0 469250 0.261 + 17298 LYPQFMFHL 9 99 606.2999405695684 NaN 0 606.3001098632812 PEAK HCD FTMS 0 0 0 18124 362304.3125 0.2242710908766068 29 -0.7834625244140625 3 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 60.38955033654506 0.02465517696295926 2 YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 24.629 0 0 2.0345 0 0 113.0906149041319 412.19916711978755 525.2897820239194 0 0 0 0 0 1.1237125054200234 0 0 0.3494850021680094 + YPQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0345 + + 93 + NaN NaN 290474.6 NaN 14374 3751 18124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18128 76.145 NaN 1337400 35 0 121310 0.261 + 20335 NYQVQFVTL 9 97 556.2926495506944 1110.5707461681886 2 556.8049926757812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NYQVQFVTL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 79.59630418116434 0.005983006570063981 2 YRVQ{M(Oxidation (M))|F}VT{I|L} 8 2 51.46 0 0 4.6337 0 0 86.0106051426895 0 86.0106051426895 0 11.54082056544722 0 0 0 2.3169015600442577 0 0.8243923658886187 0.2614393726401688 YRVQ{M(Oxidation (M))|F}VT{I|L} 4.6337 - 2232 + NaN NaN 287479.6 NaN 14375 3751 18124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18129 76.148 NaN 724240 35 0 80578 0.263 -1 0 66 414.1830750462478 826.3515971592956 2 414.18304443359375 MULTI HCD FTMS 0 0 0 18124 326714.625 0.4591978154293995 -1 0.016021728515625 5 NaN NaN 2 {I|L} 1 -1 14.604 0 0 1.7673 0 0 155.0945437821154 555.150614508087 710.2451582902024 0 0 0 0 0 0.7614393726401688 0 0 0 {I|L} 1.7673 - 27 + NaN NaN 195758.7 NaN 14376 3751 18124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18130 76.151 NaN 746640 35 0 208000 0.261 + 29696 VCSLLVFASWM 11 69 628.3164324307154 1254.6183119282307 2 628.3162841796875 MULTI HCD FTMS 0 0 0 18124 102740.453125 0.3226315461502643 2 -0.0453033447265625 6 Unmodified _VCSLLVFASWM_ ENSG00000197706|ENST00000343399|OR6C74 12.240655878213236 0.35042917576941135 2 {[DS]|[MA]|[CV]|TT}S{I|L} 4 7 16.911 0 0 1.3479 0 0 0 849.4056940897352 849.4056940897352 2.6464533319199983 0 0 0 0 0.8494850021680094 0 0 0 + {[DS]|[MA]|[CV]|TT}S{I|L} 1.3479 + + 46 NaN NaN 205064.9 NaN 14377 3751 18124 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18132 76.156 NaN 11599000 35 0 2135800 0.327 + 28526 TPQFPDMIL 9 87 539.26788511357 1076.5212172939398 2 539.2681884765625 MULTI HCD FTMS 0 0 0 18131 14816725 0.7606321582990272 14 -0.3711700439453125 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 93.16586880292088 0.00444300900000894 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 82.176 0 0 7.6335 7.6335 87.402 0 0 0 1.2832495658415155 16.478174818886373 1.2832495658415155 1.2832495658415155 0 1.9247425010840047 0 1.5114393726401687 0.2742275032520141 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L};{I|L}{[QC]|[C(Carbamidomethyl (C))A]}EPD{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]T{I|L}{I|L};[TP]WA[{M(Oxidation (M))|F}E]{I|L}T{I|L} 7.6335;7.5143;6.7258;6.5197;6.4042;3.9555;3.6534;3.5624;2.4738;1.1716 -;+;-;-;-;-;-;-;-;- + 1469 NaN NaN 750573.5 NaN 14378 3752 18131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18133 76.161 NaN 452180 35 0 25977 0.261 + 12402 KPGKGARAE 9 85 457.2642804947058 912.5140080562117 2 457.26416015625 MULTI HCD FTMS 0 0 0 18131 481020.6875 0.639807783272772 -4 0.0604705810546875 2 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 V 1 9 9.6041 0 0 1.0525 0 0 586.3199600599211 224.0975283258422 810.4174883857632 0 0 0 0 0 0.5 0 0 0 V 1.0525 - 29 + NaN NaN 168414.1 NaN 14379 3752 18131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18134 76.164 NaN 835370 35 0 90381 0.261 -1 0 88 612.2690178584618 1222.5234827837235 2 612.2685546875 MULTI HCD FTMS 0 0 0 18131 782189.625 0.3201569882904978 16 -0.43015289306640625 3 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 28.404 0 0 2.3234 0 0 684.2090931623062 0 684.2090931623062 0 0.8243243618581175 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.3234 - 355 NaN NaN 218293.1 NaN 14380 3752 18131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18135 76.167 NaN 170950 35 0 18986 0.261 + 26421 STFAVVFRNT 10 57 571.3032374431773 1140.5919219531545 2 572.7916259765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _STFAVVFRNT_ REV__ENST00000217289.8_1_20:6104001-6104151:-|nuORF 6.723162845929126 0.4397169348982109 2 [Y{M(Oxidation (M))|F}]PEM 5 -1 9.9215 0 0 0.86986 0 0 0 470.26105676822505 470.26105676822505 1.9627248839266525 0 0 0 0 0 0 0 0 [Y{M(Oxidation (M))|F}]PEM 0.86986 - 57 + NaN NaN 121441.1 NaN 14381 3752 18131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18136 76.171 NaN 421350 35 0 45827 0.261 + 10218 IHELYGDEI 9 69 544.7669677734375 NaN 0 544.7669677734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IHELYGDEI_ ENSG00000168016|ENST00000645898|TRANK1;nc|ENSG00000168016|O15050|TRANK1 11.640296217721598 0.23883959125015683 2 EWD 3 7 16.911 0 0 1.555 0 0 131.09551208057968 523.2512472285615 654.3467593091411 0 0 0 0 0 0.8494850021680094 0 0 0 EWD 1.555 - 103 + NaN NaN 151369.7 NaN 14382 3752 18131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18137 76.174 NaN 191820 35 0 20802 0.262 + 20618 PEVLTTPF 8 45 452.24477454096785 NaN 0 452.2448425292969 PEAK HCD FTMS 0 0 0 18131 52673.9921875 0.34078217231967295 -2 0.0386810302734375 6 Unmodified _PEVLTTPF_ REV__ENSG00000132874|ENST00000255226|SLC14A2 38.15118350030904 0.33165695646980475 2 {I|L}[NP]TY 5 -1 17.218 0 0 1.9079 0 0 114.05484550029435 197.09357629947502 311.1484217997694 0 0 0 0 0 0.5 0 0 0.3494850021680094 {I|L}[NP]TY 1.9079 - 13 + NaN NaN 113177.1 NaN 14383 3752 18131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18139 76.179 NaN 1440300 35 0 305750 0.327 + 6910 FPVEVNTVL 9 65 509.28442933899476 1016.5543057447895 2 509.28460693359375 MULTI HCD FTMS 0 0 0 18138 940367.4375 0.5122808454724374 1 -0.02933502197265625 1 Unmodified _FPVEVNTVL_ ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 32.78568957990786 0.09846250359632436 2 NTV{I|L} 4 5 51.472 0 0 5.0634 0 0 571.3006015432793 0 571.3006015432793 0 42.008272069161734 0 0 0 1.2302046884880937 0 0.8494850021680094 0.3252574989159953 + NTV{I|L} 5.0634 + + 219 NaN NaN 302347.2 NaN 14384 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18140 76.183 NaN 1341800 35 0 87953 0.261 -1 0 98 550.2590287363187 1098.5035045394372 2 550.2593994140625 MULTI HCD FTMS 0 0 0 18138 741883.6875 0.29729651681761904 8 -0.2113800048828125 2 NaN NaN 2 [TP]QS{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}{I|L} 8 -1 66.558 0 0 6.059 0 0 0 128.07308174621042 128.07308174621042 43.18115288178271 0 0 0 0 2.055462187404089 1.6989700043360187 0.6747425010840047 0.5891368308784531 [TP]QS{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F}{I|L} 6.059 - 1153 NaN NaN 306546.1 NaN 14385 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18141 76.187 NaN 1341800 35 0 147080 0.261 + 26906 SYLDNFIKI 9 88 556.8032594969211 1111.591966060642 2 556.8034057617188 MULTI HCD FTMS 0 0 0 18138 665217.8125 0.600793521592584 1 -0.02933502197265625 3 Unmodified _SYLDNFIKI_ ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4 132.37960578797484 0.0004606598083464779 2 SY{I|L}DN{M(Oxidation (M))|F}{I|L}K{I|L} 9 0 + 92.601 0 0 8.3305 8.3305 92.54 0 0 0 14.041563686783789 14.041563686783789 14.041563686783789 9.208187539523749 0 2.7346368802282015 1.6989700043360187 0.5283773187068795 0.5356668758921829 + + SY{I|L}DN{M(Oxidation (M))|F}{I|L}K{I|L};SY{I|L}DGG{M(Oxidation (M))|F}{I|L}K{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DN{M(Oxidation (M))|F}{I|L}K{I|L};{[TV]|[{I|L}S]}YDN{M(Oxidation (M))|F}{I|L}K{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DN{M(Oxidation (M))|F}{I|L}{I|L}K;SY{I|L}AAQ{M(Oxidation (M))|F}VT{I|L};SY{I|L}DNK{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}DGG{M(Oxidation (M))|F}{I|L}K{I|L};{[TV]|[{I|L}S]}YDN{M(Oxidation (M))|F}{I|L}{I|L}K;SY{I|L}AA[AG]{M(Oxidation (M))|F}VT{I|L} 8.3305;7.5021;7.0673;6.1883;6.1241;5.9717;5.4978;5.4747;5.2451;4.9402 +;-;+;-;-;-;-;-;-;- + 1956 + NaN NaN 303595.8 NaN 14386 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18142 76.19 NaN 1158000 35 0 555400 0.261 -1 CQTCWQASF 9 63 565.7236623120219 1129.4327716908438 2 565.7238159179688 MULTI HCD FTMS 0 0 0 18138 387572.34375 0.3641459687346258 4 -0.10726165771484375 4 Carbamidomethyl (C) _CQTC(Carbamidomethyl (C))WQASF_ ENSG00000086102|ENST00000379540|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;nc|ENSG00000086102|Q12986-2|NFX1;nc|ENSG00000086102|Q12986-3|NFX1 3.944395688203298 0.32111559684428237 2 S{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8566 0 0 877.3220162830697 0 877.3220162830697 0 9.771212547196626 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.8566 + + 22 + NaN NaN 256363.2 NaN 14387 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18143 76.193 NaN 721190 35 0 139300 0.262 + 26712 SYCYPPLC 8 79 473.1958461409681 944.3771393487363 2 473.1957702636719 MULTI HCD FTMS 0 0 0 18138 192223.046875 0.24454810262187396 -3 0.0613250732421875 5 Unmodified _SYCYPPLC_ REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF 20.871210003555333 0.44023077629866025 2 WE{I|L}Y 4 -1 57.952 0 0 6.1365 0 0 0 350.08452869975594 350.08452869975594 46.70941280735775 0 0 0 0 1.1549471895720984 1.3979400086720375 0.3494850021680094 0 WE{I|L}Y 6.1365 - 504 + NaN NaN 192095.1 NaN 14388 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18144 76.197 NaN 182750 35 0 16853 0.261 + 1226 AYLLYSLHL 9 57 546.808255708793 NaN 0 546.808349609375 PEAK HCD FTMS 0 0 0 18138 37306.09765625 0.153566423666769 1 -0.02933502197265625 6 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 57.47134341890925 0.030140116357448246 2 C{I|L}{I|L}YS 5 5 41.186 0 0 3.773 0 0 131.09127797428283 378.21418176822505 509.3054597425079 0 0 0 0 0 1.9247425010840047 0 0 0 C{I|L}{I|L}YS 3.773 - 45 + NaN NaN 124677.9 NaN 14389 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18145 76.2 NaN 235160 35 0 56598 0.261 -1 0 47 645.3783697568238 644.3710932902237 1 645.3784790039062 MULTI HCD FTMS 0 0 0 18138 152517.96875 0.14083223777991438 8 -0.2113800048828125 7 NaN NaN 2 M 1 -1 5.4846 0 0 0.85115 0 0 54.03419251072996 456.27514763307596 510.3093401438059 0 0 0 0 0 0 0 0 0 M 0.85115 - 1 + NaN NaN 121654.2 NaN 14390 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18146 76.203 NaN 267290 35 0 41686 0.264 + 3188 ECTALVYAL 9 55 491.749319795964 981.4840866587281 2 491.7494812011719 MULTI HCD FTMS 0 0 0 18138 101946.5859375 0.0836030607269056 17 -0.469940185546875 8 Unmodified _ECTALVYAL_ nc|ENSG00000008710|P98161-2|PKD1 21.74664581756881 0.17247014374749275 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP]VYA 7 5 43.868 0 0 4.4696 0 0 0 128.07189269944686 128.07189269944686 26.767331225789963 0 0 0 0 1.4247425010840047 1.3010299956639813 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WP]VYA 4.4696 - 166 NaN NaN 138283.2 NaN 14391 3753 18138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18148 76.208 NaN 2005600 35 0 249650 0.327 + 11356 IYNGKLFDLL 10 115 598.3397450461429 1194.6649371590856 2 598.3397216796875 MULTI HCD FTMS 0 0 0 18147 1747749.125 0.19894801099698417 9 -0.23758697509765625 1 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 151.47984550603806 1.6769878081458435E-07 2 [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 111.77 0 0 9.3562 9.3562 89.684 0 0 0 1.370833927740037 16.53212513775344 1.370833927740037 1.370833927740037 0 2.860924374808178 2 0.23965182871044374 1.1663865622122673 + + [Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]GGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}VE{I|L};[Y{I|L}]NGK{I|L}D{I|L}{M(Oxidation (M))|F}{I|L} 9.3562;9.2414;8.589;8.4743;8.4347;8.1919;7.6676;7.4248;6.938;6.913 +;+;-;-;-;-;-;-;-;- + 10129 NaN NaN 400550.7 NaN 14392 3754 18147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18149 76.213 NaN 1316400 35 0 116220 0.261 + 21341 PSWAYSTLLF 10 120 592.8026566945545 1183.5907604559088 2 592.8026123046875 MULTI HCD FTMS 0 0 0 18147 998818.4375 0.4923651657336093 25 -0.6793212890625 2 Unmodified _PSWAYSTLLF_ ENST00000409185.5_1_2:131806791-131806905:-|nuORF 32.30548876998284 0.21217886106551395 2 VS[R{I|L}]C(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 8 6 49.607 0 0 4.1912 0 0 177.04226882148595 0 177.04226882148595 0 17.740181612806936 0 0 0 2.110924374808178 0 0.6549471895720985 0 VS[R{I|L}]C(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 4.1912 - 2420 NaN NaN 288735.3 NaN 14393 3754 18147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18150 76.216 NaN 2634300 35 0 396950 0.261 + 35509 YYFSKLIEF 9 109 605.313031533974 1208.611510134748 2 605.313720703125 MULTI HCD FTMS 0 0 0 18147 1771635.75 0.2748980092485269 -5 0.1031494140625 3 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 110.5527297667825 0.0028521687250969148 2 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 103.94 0 0 8.6001 8.6001 91.774 0 0 0 8.429614462122487 8.429614462122487 8.429614462122487 8.494850021680094 0 2.774227503252014 2 1.2376954943324545 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}{I|L}{M(Oxidation (M))|F}E;YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};YY{M(Oxidation (M))|F}SKE{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}E{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]YSK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SKE{I|L}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}{M(Oxidation (M))|F}E;{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}E{I|L}{M(Oxidation (M))|F} 8.6001;7.8972;7.7964;6.808;6.5152;6.147;5.9911;5.5268;5.4441;5.3433 +;-;-;-;-;-;-;-;-;- + 2424 NaN NaN 494831.7 NaN 14394 3754 18147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18151 76.219 NaN 445300 35 0 207360 0.262 -1 SSCCMFFF 8 47 514.6875537871908 1027.3605546411816 2 514.6876220703125 MULTI HCD FTMS 0 0 0 18147 157867.265625 0.5458488495120831 -2 0.05197906494140625 4 Carbamidomethyl (C) _SSC(Carbamidomethyl (C))CMFFF_ ENST00000497194.6_1_11:71713256-71713580:+|nuORF 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6537 0 0 862.2818020550473 0 862.2818020550473 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6537 + + 1 + NaN NaN 159903 NaN 14395 3754 18147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18152 76.223 NaN 388740 35 0 46441 0.261 + 5071 FDWPSQAF 8 70 499.2234826347509 NaN 0 499.2306213378906 PEAK HCD FTMS 0 0 0 18147 133463.671875 0.7334917502223873 -2 0.05197906494140625 5 Unmodified _FDWPSQAF_ REV__ENSG00000077063|ENST00000160373|CTTNBP2;REV__ENST00000482124.1_1_7:117395604-117398034:-|nuORF 15.847184025352803 0.3871869056683869 2 SQ 2 -1 15.217 0 0 1.5271 0 0 147.08337199519138 631.2537935846311 778.3371655798226 0 0 0 0 0 0.4247425010840047 0 0.5 0 SQ 1.5271 + + 50 + NaN NaN 154819.1 NaN 14396 3754 18147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18153 76.226 NaN 149950 35 0 8304.3 0.261 + 34861 YSCQNCEI 8 71 480.18541886301483 NaN 0 480.1857604980469 PEAK HCD FTMS 0 0 0 18147 30009.375 0.23431259430194373 -2 0.05197906494140625 6 Unmodified _YSCQNCEI_ REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 11.640296217721598 0.38822285293237185 2 {I|L} 1 -1 10.969 0 0 1.1446 0 0 530.1511894332579 312.0986499899552 842.2498394232131 0 0 0 0 0 0.6989700043360187 0 0 0 {I|L} 1.1446 + + 22 + NaN NaN 113928.9 NaN 14397 3754 18147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18155 76.231 NaN 41538000 35 0 4366600 0.327 + 13555 KYPENFFLL 9 104 585.8131605635726 1169.6117681939452 2 585.8141479492188 MULTI HCD FTMS 0 0 0 18154 39982196 0.2032405148926957 30 -0.8101043701171875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 99.31 0 0 8.4909 8.4909 91.502 0 0 0 8.09128377914655 10.395906230238126 8.09128377914655 8.09128377914655 0 2.4802046884880937 0 0.46985651719853755 1.9174777635628797 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]S[PA]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]S[PA]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YV]S[PA]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 8.4909;7.7991;7.7036;7.6762;7.602;7.5525;6.9844;6.9102;6.8889;6.8148 +;-;-;-;-;-;-;-;-;- + 12327 NaN NaN 639942.7 NaN 14398 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18156 76.235 NaN 319910 35 0 67903 0.261 + 5539 FLEVAHEGLCR 11 58 637.321972016172 1272.629391099144 2 637.3219604492188 MULTI HCD FTMS 0 0 0 18154 114789.328125 0.17975904391557235 10 -0.27043914794921875 2 Unmodified _FLEVAHEGLCR_ REV__ENST00000337248.8_1_1:24727879-24740195:-|nuORF 2.9952420565917617 0.40578455234410343 2 EEV 3 -1 13.188 0 0 1.0362 0 0 132.13122193288092 780.3270357721311 912.4582577050121 0 0 0 0 0 0 0 0 0 EEV 1.0362 - 45 + NaN NaN 145536.3 NaN 14399 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18157 76.239 NaN 456150 35 0 38878 0.261 + 6628 FPLSESQTLL 10 75 567.8058030525966 1133.5970531719931 2 567.8055419921875 MULTI HCD FTMS 0 0 0 18154 120662.28125 0.49884058628215616 -2 0.0519866943359375 3 Unmodified _FPLSESQTLL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 29.84058131909904 0.23356904650364865 2 T{I|L}{I|L} 3 7 36.727 0 0 3.2398 0 0 788.3649769513687 0 788.3649769513687 0 16.805234507957888 0 0 0 0.805462187404089 0 0.6989700043360187 0 + T{I|L}{I|L} 3.2398 + + 133 NaN NaN 153483.3 NaN 14400 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18158 76.242 NaN 431390 35 0 65786 0.261 + 15586 LPDVSLQEF 9 61 524.2713132703586 1046.5280736075172 2 524.271240234375 MULTI HCD FTMS 0 0 0 18154 171192.03125 0.26639144169877577 -4 0.0972900390625 4 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 67.83816525789305 0.009787749748478139 2 VS{I|L}QE{M(Oxidation (M))|F} 6 3 66.988 0 0 6.4009 0 0 325.16279148036716 0 325.16279148036716 0 59.997906580286795 0 0 0 2.3807196863200843 0 0.8807196863200843 0.2742275032520141 + VS{I|L}QE{M(Oxidation (M))|F} 6.4009 + + 167 + NaN NaN 155937.5 NaN 14401 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18159 76.245 NaN 304800 35 0 34735 0.262 + 8602 HAYTTSDGQPF 11 55 408.5149731187517 1222.5230899564551 3 408.5148010253906 MULTI HCD FTMS 0 0 0 18154 102244.625 0.274496722561679 -1 0.02265167236328125 5 Unmodified _HAYTTSDGQPF_ REV__ENSG00000185774|ENST00000382152|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-2|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-3|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-4|KCNIP4;REV__nc|ENSG00000185774|Q6PIL6-5|KCNIP4 5.296884461304476 0.39569033063702824 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1039 0 0 1057.4438796066488 0 1057.4438796066488 0 1.8393875331894094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1039 + + 39 + NaN NaN 137734.5 NaN 14402 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18160 76.249 NaN 305680 35 0 32681 0.261 + 7160 FSGASQLGQC 10 70 499.2234826347509 NaN 0 499.22344970703125 PEAK HCD FTMS 0 0 0 18154 123564.53125 0.6790878972433589 -1 0.02265167236328125 6 Unmodified _FSGASQLGQC_ REV__ENST00000449426.1_1_7:56356611-56356824:+|nuORF 15.248480904072842 0.31912431859025153 2 SQ 2 -1 14.336 0 0 1.4387 0 0 147.08267362484736 631.2501925104124 778.3328661352598 0 0 0 0 0 0.4247425010840047 0 0.5 0 SQ 1.4387 + + 9 + NaN NaN 137417.8 NaN 14403 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18161 76.252 NaN 461380 35 0 109040 0.261 + 10574 IPLEEGELEL 10 60 571.3032374431773 1140.5919219531545 2 571.3031616210938 MULTI HCD FTMS 0 0 0 18154 189622.34375 0.11728500128806559 -6 0.12580108642578125 7 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 45.69961567697781 0.09594615698576985 2 {I|L}PEW{I|L}E{I|L} 7 4 51.419 0 0 4.5081 0 0 242.12620742011876 0 242.12620742011876 0 47.4396447873054 0 0 0 1.3494850021680094 0 0 0 {I|L}PEW{I|L}E{I|L} 4.5081 - 161 NaN NaN 159891.9 NaN 14404 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18162 76.255 NaN 287620 35 0 38629 0.261 + 17088 LYLDKATLIW 10 59 618.3556012223911 NaN 0 618.3551025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LYLDKATLIW_ chrX:109535977-109536937|142|21.89|0.39|5.8|+|ENST00000218004|NXT2,NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;nc|ENSG00000101888|Q9NPJ8-4|NXT2 20.41453444215458 0.2772770459383961 2 V 1 10 11.99 0 0 0.97106 0 0 859.4811109944064 273.1245511085058 1132.6056621029122 0 0 0 0 0 0.5 0 0 0 V 0.97106 - 13 + NaN NaN 133141.9 NaN 14405 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18163 76.259 NaN 143260 35 0 11232 0.261 + -1 CGRKGGFQKGF 11 55 621.3114013671875 NaN 0 621.3114013671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRKGGFQKGF_ REV__ENSG00000158987|ENST00000509018|RAPGEF6;REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;REV__nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;REV__nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;REV__nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;REV__nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;REV__RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;REV__RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant 5.296884461304476 0.3270944076746277 2 E[{I|L}A]{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 6 -1 10.891 0 0 0.87785 0 0 165.0853718827289 309.0908297174438 474.1762016001727 0 0 0 0 0 0 0 0 0 E[{I|L}A]{M(Oxidation (M))|F}{M(Oxidation (M))|F}R 0.87785 - 47 + NaN NaN 127263.1 NaN 14406 3755 18154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18165 76.263 NaN 1884900 35 0 360080 0.327 + 24634 RYLQDLLAW 9 115 589.3202632053724 1176.6259734775447 2 589.3217163085938 MULTI HCD FTMS 0 0 0 18164 2536979.75 1 0 0 1 Unmodified _RYLQDLLAW_ ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant 49.55428908609986 0.03219431099695407 2 QD{I|L}{I|L}AW 6 3 69.998 0 0 5.949 0 0 432.24827773261876 0 432.24827773261876 0 30.29290666384 0 0 0 2.774227503252014 0 0.3494850021680094 0 + QD{I|L}{I|L}AW 5.949 + + 2257 NaN NaN 380637.4 NaN 14407 3756 18164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18166 76.268 NaN 1139700 35 0 235040 0.262 + 1059 AYGNVFSAF 9 83 488.232197937976 974.4498429427521 2 488.23236083984375 MULTI HCD FTMS 0 0 0 18164 1317822.875 1 0 0 2 Unmodified _AYGNVFSAF_ ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 85.27202061508552 0.004649858145912257 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[NG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 0 + 79.592 0 0 8.1679 8.1679 90.727 0 0 0 7.447274948966935 15.396446720941697 7.447274948966935 7.447274948966935 0 2.5 0.744727494896694 0.3807196863200844 1.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[NG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QA]{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};{[SA]|[TG]}{M(Oxidation (M))|F}[QA]{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};[RP][C(Carbamidomethyl (C))R][SG]{[QD]|[EN]|[WG]|[KD]|[RS]} 8.1679;7.4037;6.728;5.9638;0.2981 +;-;-;-;- + 318 NaN NaN 264199.9 NaN 14408 3756 18164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18167 76.271 NaN 690050 35 0 32773 0.261 -1 LYMPKLLYF 9 95 602.3262230217347 NaN 0 602.3110961914062 PEAK HCD FTMS 0 0 0 18164 60657.42578125 1 0 0 3 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 7.910154910731844 0.25691533546754686 2 {I|L}{I|L}C(Carbamidomethyl (C))EGW 6 -1 20.94 0 0 1.7412 0 0 166.11001429550316 275.13993696286894 441.2499512583721 0 0 0 0 0 0 0 0.6861818737241735 0 {I|L}{I|L}C(Carbamidomethyl (C))EGW 1.7412 - 1136 + NaN NaN 191257.7 NaN 14409 3756 18164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18168 76.275 NaN 472810 35 0 33776 0.261 + 6755 FPQKFIDLL 9 86 560.8236676243027 1119.6327823154054 2 560.823486328125 MULTI HCD FTMS 0 0 0 18164 477673 0.10062318489644252 20 -0.53887939453125 4 Unmodified _FPQKFIDLL_ ENSG00000156876|ENST00000287482|SASS6;ENST00000462159.1_1_1:100573356-100598412:-|nuORF 66.45667989310934 0.010234776021261575 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 9 0 + 63.008 0 0 5.6276 5.6276 86.399 0 0 0 7.532059605518313 13.72486274231747 7.532059605518313 7.532059605518313 0 1.1549471895720984 1.2218487496163564 0.6694451763165201 0.3494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QK{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}K[QP]{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QKEV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Q{I|L}GSV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[WK]SV{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]KEV{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};[QP]K{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}D{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[AG]{I|L}GSV{M(Oxidation (M))|F}{I|L}{I|L} 5.6276;4.9549;4.8614;4.8206;4.8052;4.3955;4.039;4.014;3.7919;3.6899 +;-;-;-;-;-;-;-;-;- + 1100 NaN NaN 152540.9 NaN 14410 3756 18164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18169 76.278 NaN 458290 35 0 27564 0.261 + 32791 WSHDIFYIF 9 69 614.2956938928323 1226.5768348524646 2 614.7931518554688 MULTI HCD FTMS 0 0 0 18164 271903.65625 0.3215650822742884 -5 0.12989044189453125 5 Unmodified _WSHDIFYIF_ REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense 28.486842064014134 0.11819662193267319 2 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 -1 + 66.009 0 0 5.3816 5.3816 86.558 0 0 0 18.947792777065615 39.71053665839513 18.947792777065615 9.030899869919438 0 0.3807196863200844 1.6989700043360187 0.805462187404089 0.3054621874040891 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AER[WE]{I|L}{M(Oxidation (M))|F};[YN]AER{[WN]|[YH]}K{M(Oxidation (M))|F};[YN]AWV{[ET]|[MV]}VV{M(Oxidation (M))|F};[YN]AWV{[ET]|[MV]}[TP]{M(Oxidation (M))|F};[YN]AER{[ET]|[MV]}[TP]{M(Oxidation (M))|F};[YN]AER{[ET]|[MV]}VV{M(Oxidation (M))|F};[Y{I|L}]EEV{[TV]|[{I|L}S]}D{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV[{M(Oxidation (M))|F}V]AEE;[RH]{[WN]|[YH]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.3816;4.6453;3.8709;3.7646;3.7646;3.0284;3.0284;2.6794;1.3635;1.3571 -;-;-;-;-;-;-;-;-;- 467 NaN NaN 161843.6 NaN 14411 3756 18164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18170 76.281 NaN 506440 35 0 73852 0.264 + -1 CWIKCRQCL 9 70 403.8612732165416 NaN 0 403.8611145019531 PEAK HCD FTMS 0 0 0 18164 550700 1 0 0 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))WIKCRQCL_ REV__ENST00000440114.1_1_2:198362106-198364543:-|nuORF 2.498486711656943 0.28313952434011336 2 E 1 -1 3.9794 0 0 0.4939 0 0 372.55044452703004 301.1013277643188 673.6517722913488 0 0 0 0 0 0 0 0 0 E 0.4939 - 8 + NaN NaN 170343.2 NaN 14412 3756 18164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18172 76.286 NaN 322760 35 0 19805 0.327 + 10879 IWAALLML 8 75 465.7774943895481 929.5404358458962 2 465.77752685546875 MULTI HCD FTMS 0 0 0 18171 229208.515625 0.3369925187536555 1 -0.01605987548828125 1 Unmodified _IWAALLML_ REV__ENSG00000181958|ENST00000641526|OR4A15;REV__nc|ENSG00000181958|Q8NGL6|OR4A15 6.354104778181461 0.5325651638111438 2 [W{I|L}]{M(Oxidation (M))|F} 3 -1 18.161 0 0 1.9537 0 0 0 480.2904718168525 480.2904718168525 15.061668675368626 0 0 0 0 0 1.2218487496163564 0 0 [W{I|L}]{M(Oxidation (M))|F} 1.9537 - 26 NaN NaN 138175 NaN 14413 3757 18171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18173 76.291 NaN 509590 35 0 58108 0.261 -1 0 58 414.1830750462478 826.3515971592956 2 414.1833190917969 MULTI HCD FTMS 0 0 0 18171 350654.59375 0.492845471549624 5 -0.13028717041015625 2 NaN NaN 2 {I|L} 1 -1 14.604 0 0 1.7673 0 0 155.09458179470306 555.1502169244749 710.2447987191779 0 0 0 0 0 0.7614393726401688 0 0 0 {I|L} 1.7673 - 21 + NaN NaN 162701.5 NaN 14414 3757 18171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18174 76.294 NaN 483080 35 0 67112 0.261 + 3859 EPITVEVAF 9 82 502.76857803894677 NaN 0 502.7685546875 PEAK HCD FTMS 0 0 0 18171 145790.375 0.9458863211096245 1 -0.01605987548828125 3 Unmodified _EPITVEVAF_ ENSG00000153339|ENST00000283351|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 42.09456458481378 0.07155800144855468 2 AVE 3 7 24.785 0 0 2.4698 0 0 165.07876265592034 536.2739351861936 701.3526978421139 0 0 0 0 0 1.348136244196333 0 0.6382104921644451 0 AVE 2.4698 - 150 + NaN NaN 162848.7 NaN 14415 3757 18171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18175 76.297 NaN 240340 35 0 33094 0.261 + 33488 YIARNIELPF 10 63 618.3430199316391 1234.6714869300781 2 618.3433227539062 MULTI HCD FTMS 0 0 0 18171 65876.8515625 0.056631613274334955 12 -0.329833984375 4 Unmodified _YIARNIELPF_ REV__ENSG00000116731|ENST00000311066|PRDM2;REV__ENST00000491134.5_1_1:14057588-14095647:+|nuORF;REV__ENST00000502724.5_1_1:14065411-14095647:+|nuORF;REV__nc|ENSG00000116731|Q13029-2|PRDM2;REV__nc|ENSG00000116731|Q13029-4|PRDM2;REV__PRDM2|p.T1015Pfs*26|1|0.37|ENSG00000116731|chr1:13780836-13780836|C/-|frameshift_variant 9.38312468134398 0.42334543440173333 2 [Y{I|L}]V 3 -1 37.447 0 0 3.033 0 0 0 856.4333332037687 856.4333332037687 17.98332479720628 0 0 0 0 1 1.6989700043360187 0 0 [Y{I|L}]V 3.033 - 15 NaN NaN 138348.9 NaN 14416 3757 18171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18177 76.302 NaN 7603700 35 0 1415600 0.327 + 28527 TPQFPDMIL 9 72 539.26788511357 1076.5212172939398 2 539.2681884765625 MULTI HCD FTMS 0 0 0 18176 6981419.5 0.3583985112955741 20 -0.5558319091796875 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 79.59630418116434 0.005983006570063981 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 83.184 0 0 7.7271 7.7271 88.668 0 0 0 3.979400086720375 16.478174818886373 3.979400086720375 3.979400086720375 0 1.8494850021680094 0 1.7856668758921828 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}PD{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{[NV]|[RG]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{I|L}[C(Carbamidomethyl (C))S]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L} 7.7271;7.3575;6.5021;6.4326;6.153;6.1406;4.0878;3.4835;3.1138;2.1813 -;+;-;-;-;-;-;-;-;- + 961 NaN NaN 543446.1 NaN 14417 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18178 76.307 NaN 502490 35 0 28609 0.261 + 12403 KPGKGARAE 9 84 457.2642804947058 912.5140080562117 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18176 523678.5625 0.6965472149689961 2 -0.06203460693359375 2 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 W 1 9 10.713 0 0 1.174 0 0 708.4240707776945 0 708.4240707776945 0 1.1105940464584219 0 0 0 0 0 0 0 W 1.174 - 66 + NaN NaN 170428.6 NaN 14418 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18179 76.31 NaN 484560 35 0 46244 0.261 + 5075 FEDEEEAELL 10 83 612.2690178584618 1222.5234827837235 2 612.2686157226562 MULTI HCD FTMS 0 0 0 18176 207367.390625 0.08487726905372749 22 -0.614837646484375 3 Unmodified _FEDEEEAELL_ REV__ENSG00000163159|ENST00000368892|VPS72;REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF;REV__nc|ENSG00000163159|Q15906-2|VPS72 6.2057823575117 0.44245551207394906 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 19.737 0 0 1.6144 0 0 831.2729359357437 0 831.2729359357437 0 5.043869621537528 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 1.6144 - 45 NaN NaN 166528.1 NaN 14419 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18180 76.313 NaN 418260 35 0 80194 0.261 -1 YILTCEHDVL 10 74 631.8080033406432 1261.6014537480862 2 631.80810546875 MULTI HCD FTMS 0 0 0 18176 146108.71875 0.6786652551875558 -1 0.01605987548828125 4 Carbamidomethyl (C) _YILTC(Carbamidomethyl (C))EHDVL_ ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 6.723162845929126 0.4397169348982109 2 VV{I|L} 3 -1 29.693 0 0 2.3536 0 0 932.3660755841812 0 932.3660755841812 0 25.088643834802156 0 0 0 0.5 0 0 0 VV{I|L} 2.3536 - 77 NaN NaN 154481.1 NaN 14420 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18181 76.317 NaN 531600 35 0 66147 0.262 + 5981 FPDQVAIQL 9 56 515.7819895057114 1029.5494260782227 2 515.7823486328125 MULTI HCD FTMS 0 0 0 18176 293793.25 0.07956125213006587 -20 0.33058929443359375 5 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 31.26834338654808 0.10542797264966089 2 C(Carbamidomethyl (C))A{I|L}Q{I|L} 5 5 53.756 0 0 5.2213 0 0 426.24998671699376 0 426.24998671699376 0 32.78659694992122 0 0 0 1.5 0 0 0.3807196863200844 C(Carbamidomethyl (C))A{I|L}Q{I|L} 5.2213 - 112 NaN NaN 186211.6 NaN 14421 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18182 76.32 NaN 316270 35 0 54731 0.261 + 3710 ELWTSYIF 8 47 529.7629900619331 1057.5114271906662 2 529.7639770507812 MULTI HCD FTMS 0 0 0 18176 48181.75 0.18869537010276619 -3 0.0713348388671875 6 Unmodified _ELWTSYIF_ REV__ENSG00000076864|ENST00000374765|RAP1GAP;REV__nc|ENSG00000076864|P47736-2|RAP1GAP;REV__nc|ENSG00000076864|P47736-3|RAP1GAP;REV__nc|ENSG00000076864|P47736-4|RAP1GAP 19.438996006549623 0.45076845602799126 2 Y{M(Oxidation (M))|F}{I|L} 3 -1 34.253 0 0 3.239 0 0 616.2857844565449 0 616.2857844565449 0 14.520534381044499 0 0 0 0.805462187404089 0 0 0 Y{M(Oxidation (M))|F}{I|L} 3.239 - 16 NaN NaN 139780.6 NaN 14422 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18183 76.323 NaN 234760 35 0 16784 0.261 + 25520 SFIVRKKIC 9 65 547.3325367317575 NaN 0 547.5956420898438 PEAK HCD FTMS 0 0 0 18176 49502.859375 0.11275012051964269 12 -0.34661865234375 7 Unmodified _SFIVRKKIC_ REV__tr|U7T3D0|U7T3D0_FUSNUZinctransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00356PE=4SV=1 4.3292370932331545 0.2742679634796037 2 C{I|L}{I|L}[NG]{I|L}{I|L} 7 -1 11.303 0 0 1.0345 0 0 132.1457120359774 231.07711206607658 363.222824102054 0 0 0 0 0 0 0 0 0 C{I|L}{I|L}[NG]{I|L}{I|L} 1.0345 - 66 + NaN NaN 119560.9 NaN 14423 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18184 76.327 NaN 137170 35 0 10121 0.261 + 34862 YSCQNCEI 8 56 480.18541886301483 NaN 0 480.1853332519531 PEAK HCD FTMS 0 0 0 18176 124198.9296875 0.9697427362150269 2 -0.06203460693359375 8 Unmodified _YSCQNCEI_ REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1 11.640296217721598 0.38822285293237185 2 {I|L} 1 -1 12.787 0 0 1.3342 0 0 530.1506401168516 312.0974215143188 842.2480616311705 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L} 1.3342 + + 11 + NaN NaN 107225.2 NaN 14424 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18185 76.33 NaN 234440 35 0 32754 0.261 + 33984 YLVGQKNREE 10 62 618.3214130535334 NaN 0 618.34228515625 PEAK HCD FTMS 0 0 0 18176 23613.46875 0.571027404752535 -1 0.01605987548828125 9 Unmodified _YLVGQKNREE_ REV__ENST00000406027.2_1_2:216946696-216946852:+|nuORF 7.289230182591677 0.3339457182549222 2 V 1 -1 6.9897 0 0 0.56614 0 0 859.4135820578969 273.12405749713815 1132.537639555035 0 0 0 0 0 0 0 0 0 V 0.56614 + + 10 + NaN NaN 127791.9 NaN 14425 3758 18176 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18187 76.335 NaN 875330 35 0 181850 0.327 + 6911 FPVEVNTVL 9 60 509.28442933899476 1016.5543057447895 2 509.2843933105469 MULTI HCD FTMS 0 0 0 18186 671571.3125 0.365849673269375 7 -0.1925201416015625 1 Unmodified _FPVEVNTVL_ ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 39.94969957227396 0.06557568441294001 2 PDENTV{I|L} 7 3 63.946 0 0 6.2905 0 0 230.16272170234532 0 230.16272170234532 0 56.95631999009912 0 0 0 0.7742275032520141 0 0.8494850021680094 0.3252574989159953 PDENTV{I|L} 6.2905 - 185 NaN NaN 220109.8 NaN 14426 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18188 76.339 NaN 456440 35 0 23752 0.261 + 31725 VYLGTAAPTYF 11 88 601.8084615813646 1201.602370229529 2 601.8082885742188 MULTI HCD FTMS 0 0 0 18186 490754.71875 0.30446329515455123 34 -0.8987960815429688 2 Unmodified _VYLGTAAPTYF_ REV__ENSG00000197822|ENST00000396442|OCLN;REV__nc|ENSG00000197822|Q16625-2|OCLN;REV__nc|ENSG00000197822|Q16625-3|OCLN 36.12702656103203 0.16189322891242686 2 {M(Oxidation (M))|F}[EC]{[WN]|[YH]}{I|L}{M(Oxidation (M))|F} 7 -1 36.922 0 0 3.0727 0 0 244.17822463203282 0 244.17822463203282 0 7.051659544201819 0 0 0 1.5 0 1.0451140161145327 0 {M(Oxidation (M))|F}[EC]{[WN]|[YH]}{I|L}{M(Oxidation (M))|F} 3.0727 - 793 NaN NaN 165540.5 NaN 14427 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18189 76.343 NaN 848700 35 0 53901 0.261 -1 0 91 550.2590287363187 1098.5035045394372 2 550.259033203125 MULTI HCD FTMS 0 0 0 18186 1024678.3125 0.4106213659871121 14 -0.36582183837890625 3 NaN NaN 2 TPQ{M(Oxidation (M))|F}PDST 8 -1 52.878 0 0 4.8137 0 0 0 222.08782373599846 222.08782373599846 10.738219257563983 0 0 0 0 1.3494850021680094 0 0.8494850021680094 0.2742275032520141 TPQ{M(Oxidation (M))|F}PDST 4.8137 - 863 + NaN NaN 217733.2 NaN 14428 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18190 76.346 NaN 593630 35 0 76726 0.261 + 26757 SYFPKILTF 9 74 558.310233417905 1114.60591390261 2 558.3106689453125 MULTI HCD FTMS 0 0 0 18186 348122.25 1 0 0 4 Unmodified _SYFPKILTF_ ENSG00000138821|ENST00000356736|SLC39A8;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8 45.739877483867886 0.03899552410870734 2 PMT{M(Oxidation (M))|F} 4 6 37.528 0 0 3.3669 0 0 620.387987205275 0 620.387987205275 0 20.336621404200994 0 0 0 1.3807196863200843 0 0 0 PMT{M(Oxidation (M))|F} 3.3669 - 101 NaN NaN 182825.1 NaN 14429 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18191 76.349 NaN 625700 35 0 283120 0.261 + -1 CPGNCQFASF 10 60 565.7236623120219 1129.4327716908438 2 565.7233276367188 MULTI HCD FTMS 0 0 0 18186 381694.8125 0.35862369825967194 10 -0.28108978271484375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))PGNCQFASF_ REV__ENST00000489062.2_1_9:18905734-18907026:+|nuORF 3.2813086475875832 0.45793521633868084 2 S{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8566 0 0 877.3223113410376 0 877.3223113410376 0 13.010299956639813 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.8566 + + 25 + NaN NaN 186341.4 NaN 14430 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18192 76.353 NaN 419670 35 0 43288 0.261 + 6629 FPLSESQTLL 10 75 567.8058030525966 1133.5970531719931 2 567.806396484375 MULTI HCD FTMS 0 0 0 18186 106463.515625 0.4401402161624927 2 -0.0553741455078125 6 Unmodified _FPLSESQTLL_ ENSG00000116580|ENST00000368331|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1 47.594388314883695 0.08653821083322558 2 T{I|L}{I|L} 3 7 32.792 0 0 2.8927 0 0 788.3621693341812 0 788.3621693341812 0 11.620768972555595 0 0 0 0.3807196863200844 0 0.7302046884880937 0 + T{I|L}{I|L} 2.8927 + + 147 NaN NaN 156355.3 NaN 14431 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18193 76.356 NaN 248840 35 0 35894 0.261 + 8749 HHPSCPTELLL 11 69 623.8139821805557 1245.6134114279114 2 623.81396484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HHPSCPTELLL_ ENST00000544907.6_1_17:26671671-26671929:+|nuORF 8.155526934196011 0.3831532958467648 2 {I|L}{I|L}{I|L} 3 8 28.812 0 0 2.3131 0 0 888.347459861525 0 888.347459861525 0 17.57515625508539 0 0 0 0.5 0 0 0 + {I|L}{I|L}{I|L} 2.3131 + + 28 NaN NaN 127503.5 NaN 14432 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18194 76.359 NaN 229600 35 0 27699 0.263 + 18166 MPDIDFNL 8 61 490.7232626074851 979.4319722817702 2 490.7230529785156 MULTI HCD FTMS 0 0 0 18186 154305.578125 0.6560798731362569 4 -0.1109161376953125 8 Oxidation (M) _M(Oxidation (M))PDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 42.09456458481378 0.20402248593209013 2 D{M(Oxidation (M))|F}N{I|L} 4 4 39.513 0 0 4.0343 0 0 472.1982594220719 0 472.1982594220719 0 29.055781609639766 0 0 0 0.6989700043360187 0 0.3054621874040891 0.3807196863200844 + D{M(Oxidation (M))|F}N{I|L} 4.0343 + + 47 NaN NaN 121530.3 NaN 14433 3759 18186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18196 76.364 NaN 5428300 35 0 950500 0.327 + 35510 YYFSKLIEF 9 104 605.313031533974 1208.611510134748 2 605.3134155273438 MULTI HCD FTMS 0 0 0 18195 2604197 0.4040833850812652 1 -0.02602386474609375 1 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 133.0521902211835 0.0004198702180815479 2 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 106.37 0 0 8.8007 8.8007 91.277 0 0 0 5.057809497117844 5.057809497117844 5.057809497117844 6.703103093438969 0 2.774227503252014 2 1.4802046884880937 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}{I|L}{M(Oxidation (M))|F}E;YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};YY{M(Oxidation (M))|F}SKE{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SKE{I|L}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}{M(Oxidation (M))|F}E;[Y{M(Oxidation (M))|F}]YSK{I|L}{I|L}E{M(Oxidation (M))|F} 8.8007;8.2461;8.1638;7.6129;7.2341;6.7802;6.6008;6.2256;6.1433;6.1197 +;-;-;-;-;-;-;-;-;- + 4100 NaN NaN 612896.7 NaN 14434 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18197 76.369 NaN 1754900 35 0 225580 0.261 + 17110 LYLGLFNRL 9 81 554.8292396668196 1107.643926400439 2 554.8294677734375 MULTI HCD FTMS 0 0 0 18195 471980.3125 0.2784383220854602 -1 0.02935028076171875 2 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 112.59319219568356 0.00251905749371435 2 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 10 2 + 97.759 0 0 8.8258 8.8258 90.08 0 0 0 25.6259189508755 9.147744131989128 9.147744131989128 3.521825181113627 0 2.860924374808178 1.6989700043360187 0 0.3054621874040891 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};[Y{I|L}]{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}{I|L}[RN];[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}NR{I|L};[Y{I|L}]G{I|L}{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}{I|L}[RN] 8.8258;8.5079;8.2823;8;7.9643;7.8641;7.559;7.3896;7.2537;7.0154 -;+;-;+;-;-;-;-;-;- + 1022 + NaN NaN 355751.7 NaN 14435 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18198 76.372 NaN 397120 35 0 76757 0.261 + 26713 SYCYPPLC 8 72 473.1958461409681 944.3771393487363 2 473.19573974609375 MULTI HCD FTMS 0 0 0 18195 167188.9375 0.2126994557087606 4 -0.110992431640625 3 Unmodified _SYCYPPLC_ REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF 14.581692164780916 0.48650662947107914 2 WE{I|L}Y 4 -1 58.704 0 0 6.2162 0 0 0 350.0841353639521 350.0841353639521 46.26918465971855 0 0 0 0 1.2302046884880937 1.3979400086720375 0.3494850021680094 0 WE{I|L}Y 6.2162 - 374 + NaN NaN 155749.1 NaN 14436 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18199 76.375 NaN 558320 35 0 40853 0.261 + 21342 PSWAYSTLLF 10 87 592.8026566945545 1183.5907604559088 2 592.8027954101562 MULTI HCD FTMS 0 0 0 18195 268919.0625 0.13256301025854794 31 -0.846099853515625 4 Unmodified _PSWAYSTLLF_ ENST00000409185.5_1_2:131806791-131806905:-|nuORF 25.399314129420986 0.2735354021946395 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 30.93 0 0 2.6132 0 0 792.346164797027 0 792.346164797027 0 5.440228147639203 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.6132 - 388 NaN NaN 178607.8 NaN 14437 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18200 76.379 NaN 337370 35 0 65959 0.262 + 20525 PDSFDPLTI 9 71 502.7504549215921 1003.4863569099842 2 502.75030517578125 MULTI HCD FTMS 0 0 0 18195 49692.20703125 0.31891767288363515 1 -0.02602386474609375 5 Unmodified _PDSFDPLTI_ REV__ENSG00000165914|ENST00000328459|TTC7B;REV__nc|ENSG00000165914|Q86TV6-2|TTC7B 20.453626601364224 0.18364154288633264 2 ECT{I|L} 4 -1 32.339 0 0 3.2227 0 0 539.2921009748062 0 539.2921009748062 0 11.370090806403468 0 0 0 0.4247425010840047 0 0.3054621874040891 0 ECT{I|L} 3.2227 - 65 NaN NaN 139955 NaN 14438 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18201 76.382 NaN 192920 35 0 21343 0.261 + 26824 SYIEHIFEI 9 60 575.7927228870228 1149.5708928408455 2 576.2945556640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 46.020951573049366 0.037705236580089195 2 {M(Oxidation (M))|F}E{I|L} 3 6 33.94 0 0 2.9524 0 0 742.3665182167204 0 742.3665182167204 0 19.675390846596486 0 0 0 0.4247425010840047 0 0.3494850021680094 0 + {M(Oxidation (M))|F}E{I|L} 2.9524 + + 46 NaN NaN 121261.6 NaN 14439 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18202 76.385 NaN 176070 35 0 37217 0.261 + 25523 SFKKKEKK 8 54 511.8209233328351 NaN 0 511.82098388671875 PEAK HCD FTMS 0 0 0 18195 35161.91015625 0.2554707056327331 1 -0.02602386474609375 7 Unmodified _SFKKKEKK_ REV__SLCO5A1|p.K380E|1|0.07|ENSG00000137571|chr8:69755544-69755544|T/C|missense_variant 2.577480529830294 0.38822285293237185 2 D 1 -1 3.9794 0 0 0.38952 0 0 278.2472410975077 625.3337828930192 903.581023990527 0 0 0 0 0 0 0 0 0 D 0.38952 - 8 + NaN NaN 114425.3 NaN 14440 3760 18195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18204 76.39 NaN 24080000 35 0 2572700 0.327 + 13556 KYPENFFLL 9 102 585.8131605635726 1169.6117681939452 2 585.81396484375 MULTI HCD FTMS 0 0 0 18203 25920736 0.13176224064925382 36 -0.8916854858398438 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 89.064 0 0 7.6149 7.6149 89.038 0 0 0 5.568109453757657 11.730078252872502 5.568109453757657 5.568109453757657 0 2.6307196863200843 0 0.25 1.7104093769761874 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.6149;7.1388;6.8276;6.7794;6.612;6.3515;6.3034;6.1378;6.1359;6.0309 +;-;-;-;-;-;-;-;-;- + 11392 NaN NaN 635973.6 NaN 14441 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18205 76.395 NaN 1381600 35 0 377030 0.261 + 10575 IPLEEGELEL 10 79 571.3032374431773 1140.5919219531545 2 571.3032836914062 MULTI HCD FTMS 0 0 0 18203 1616765.5 1 0 0 2 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 78.7280429016045 0.0072433801744089844 2 {[QN]|[E{I|L}]|[KN]}{I|L}PEGE{I|L}E{I|L} 10 2 + 94.575 0 0 8.2917 8.2917 95.765 0 0 0 20.558685151513444 63.31567303158435 20.558685151513444 25 0 1.4247425010840047 1.3010299956639813 1.0941876774005248 0 {[QN]|[E{I|L}]|[KN]}{I|L}PEGE{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}{I|L}PE{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{[DA]|[EG]}PE{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}{I|L}EP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{[DA]|[EG]}EP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}PEG[HS]{M(Oxidation (M))|F}{I|L};[YR][YR]E{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}{[DA]|[EG]}{I|L}P[HS]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{[DA]|[EG]}P[HS]{M(Oxidation (M))|F}{I|L};[VP][KQ]EG[HS]{M(Oxidation (M))|F}{I|L} 8.2917;6.0999;5.9455;5.9455;5.7911;5.3489;3.8293;3.157;3.0026;2.7294 -;-;-;-;-;-;-;-;-;- 515 NaN NaN 305996.3 NaN 14442 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18206 76.398 NaN 1506600 35 0 172120 0.261 + 25885 SMTRYFYLF 9 86 614.2956938928323 1226.5768348524646 2 614.2969360351562 MULTI HCD FTMS 0 0 0 18203 1191269.25 1 0 0 3 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 69.10491478415734 0.009377850133389008 2 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 7 + 53.338 0 0 4.3485 4.3485 89.272 0 0 0 2.2632617094281926 12.447274948966935 2.2632617094281926 24.51790047062772 0 0.5 1.3010299956639813 0.8494850021680094 0 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}[RN]WAEE;[YN]AWV[{I|L}P]{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F};[YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][HS]V[WE]{I|L}{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};[Y{I|L}]{M(Oxidation (M))|F}Y[RH]AEE;[Y{I|L}]{M(Oxidation (M))|F}[NG]VC[{I|L}V]{[CP]|[EA]};[NP]TY{I|L}W{[CA]|SS}{I|L}{M(Oxidation (M))|F};[MT][KA]CV[WE]{I|L}{M(Oxidation (M))|F} 4.3485;2.3496;2.274;2.1549;1.861;1.8491;1.7798;1.6301;1.5865;1.5237 -;-;-;-;-;-;-;-;-;- 1627 NaN NaN 325574.8 NaN 14443 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18207 76.402 NaN 667240 35 0 108490 0.262 + 15587 LPDVSLQEF 9 76 524.2713132703586 1046.5280736075172 2 524.2716064453125 MULTI HCD FTMS 0 0 0 18203 602442.0625 0.9374584108707394 2 -0.0555419921875 4 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 106.94017166704063 0.003441928997083001 2 VS{I|L}QE{M(Oxidation (M))|F} 6 3 75.042 0 0 7.1706 0 0 325.16242526942966 0 325.16242526942966 0 66.97025986567944 0 0 0 2.3807196863200843 0 1.2302046884880937 0.7302046884880937 + VS{I|L}QE{M(Oxidation (M))|F} 7.1706 + + 385 + NaN NaN 190329.7 NaN 14444 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18208 76.405 NaN 1042900 35 0 106440 0.261 + 11357 IYNGKLFDLL 10 112 598.3397450461429 1194.6649371590856 2 598.3397827148438 MULTI HCD FTMS 0 0 0 18203 660982.25 0.07524026306796826 16 -0.43827056884765625 5 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 128.57297698046145 2.2510087319712773E-05 2 {I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 108.16 0 0 9.0539 9.0539 90.044 0 0 0 19.38039076304328 2.848265625289841 2.848265625289841 2.848265625289841 0 3.579689690656103 2 2.2346368802282015 0 + + {I|L}YNGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GGGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};{I|L}YNGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YGGGK{I|L}D{M(Oxidation (M))|F}{I|L}{I|L};{I|L}YNGK{I|L}{M(Oxidation (M))|F}VE{I|L};[YQ]VGK{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]NGK{I|L}D{I|L}{M(Oxidation (M))|F}{I|L};{I|L}YGGGK{I|L}{M(Oxidation (M))|F}VE{I|L} 9.0539;8.8155;8.2868;8.0483;7.8757;7.1086;6.8801;6.2189;6.1878;6.113 +;+;-;-;-;-;-;-;-;- + 5393 + NaN NaN 250413.6 NaN 14445 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18209 76.408 NaN 243940 35 0 14437 0.261 -1 MQPRMFFLF 9 79 616.8015097032227 NaN 0 616.8015747070312 PEAK HCD FTMS 0 0 0 18203 35024.47265625 0.6342213938778295 1 -0.0261688232421875 6 Oxidation (M) _MQPRM(Oxidation (M))FFLF_ ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF;nc|ENSG00000180263|Q6ZV73-2|FGD6 21.74664581756881 0.17567436591797916 2 EA 2 -1 7.0783 0 0 0.57473 0 0 633.3160188187516 395.16425501041255 1028.4802738291642 0 0 0 0 0 0 0 0 0 EA 0.57473 - 51 + NaN NaN 121496.1 NaN 14446 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18210 76.412 NaN 141840 35 0 7061 0.263 + 21359 PTKLNTRQ 8 65 479.277491538702 956.540430144204 2 479.2776184082031 MULTI HCD FTMS 0 0 0 18203 96368.046875 0.3706785680221111 -12 0.28519439697265625 7 Unmodified _PTKLNTRQ_ REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF 3.5964929083625545 0.5366564765791996 2 P 1 -1 3.0989 0 0 0.32397 0 0 522.297920233851 334.16352258853755 856.4614428223886 0 0 0 0 0 0 0 0 0 P 0.32397 + + 6 + NaN NaN 104295.8 NaN 14447 3761 18203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18212 76.416 NaN 883360 35 0 121220 0.327 + 19975 NYGTIKWFF 9 92 588.2973280580784 1174.5801031829567 2 589.3206787109375 MULTI HCD FTMS 0 0 0 18211 55952.171875 0.29082384383573706 3 -0.08487701416015625 1 Unmodified _NYGTIKWFF_ ENSG00000089041|ENST00000328963|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-2|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;nc|ENSG00000089041|Q99572-5|P2RX7 27.628801355627647 0.12213550946336599 2 {[DS]|[MA]|[CV]|TT}A{I|L}[TA]{NN|[MP]|[D{I|L}]|[EV]}{I|L}AW 11 9 + 40.489 0 0 3.4471 3.4471 82.232 0 0 0 5.055910365907259 6.811738510379293 5.055910365907259 4.24742501084004 0 0 0 0.4247425010840047 0 {[DS]|[MA]|[CV]|TT}A{I|L}[TA]{NN|[MP]|[D{I|L}]|[EV]}{I|L}AW;{[DS]|[MA]|[CV]|TT}A{I|L}[KG]P[KC]AW;YG{I|L}[QP]{NN|[MP]|[D{I|L}]|[EV]}{I|L}AW;{[DS]|[MA]|[CV]|TT}A{I|L}[KG]P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KC];{[CT]|[{M(Oxidation (M))|F}G]}A{I|L}{NN|[MP]|[D{I|L}]|[EV]}[KP]{I|L}{[DS]|[MA]|[CV]|TT};YY{M(Oxidation (M))|F}{I|L}{I|L}[TP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{NN|[MP]|[D{I|L}]|[EV]}[RD]{[WT]|[RM]}{I|L}AW;YY{M(Oxidation (M))|F}{I|L}{I|L}AA{I|L}{[DS]|[MA]|[CV]|TT};{[DS]|[MA]|[CV]|TT}A{I|L}C[RP][PG]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}[QP]{I|L}{[DS]|[MA]|[CV]|TT} 3.4471;3.0855;2.6082;1.7985;1.1541;1.1522;0.99375;0.92928;0.60894;0.3342 -;-;-;-;-;-;-;-;-;- 522 + NaN NaN 219494 NaN 14448 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18213 76.421 NaN 1608400 35 0 226600 0.261 + 30095 VFVDSVPEF 9 95 519.7609385954052 1037.5073242576102 2 519.7605590820312 MULTI HCD FTMS 0 0 0 18211 245644.125 0.6815636558205036 1 -0.0293731689453125 2 Unmodified _VFVDSVPEF_ ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9 68.08070601005525 0.009709267492204555 2 {I|L}{M(Oxidation (M))|F}CR[EP]{M(Oxidation (M))|F} 7 5 46.213 0 0 4.4543 0 0 127.08547837850081 0 127.08547837850081 0 26.547669301480784 0 0 0 1.2614393726401687 0 0.23965182871044374 0.4247425010840047 {I|L}{M(Oxidation (M))|F}CR[EP]{M(Oxidation (M))|F} 4.4543 - 1974 + NaN NaN 340356.2 NaN 14449 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18214 76.424 NaN 190530 35 0 37421 0.263 -1 0 47 416.21258309331836 415.20530662671837 1 416.2125244140625 MULTI HCD FTMS 0 0 0 18211 311732.25 0.6517031647099105 6 -0.16996002197265625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 119685.5 NaN 14450 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18215 76.428 NaN 482190 35 0 140120 0.261 -1 0 43 413.19347310473944 824.3723932762789 2 413.1933898925781 MULTI HCD FTMS 0 0 0 18211 213307.859375 0.4588773180329667 3 -0.08487701416015625 4 NaN NaN 2 Q 1 -1 2.4743 0 0 0.30014 0 0 430.1997381022539 263.0891207330688 693.2888588353227 0 0 0 0 0 0 0 0 0 Q 0.30014 - 1 + NaN NaN 167513.8 NaN 14451 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18216 76.431 NaN 253300 35 0 36200 0.261 + 1060 AYGNVFSAF 9 57 488.232197937976 974.4498429427521 2 488.2322082519531 MULTI HCD FTMS 0 0 0 18211 153730.75 0.11665509296915187 6 -0.16996002197265625 5 Unmodified _AYGNVFSAF_ ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 43.85829265575387 0.04763305254408404 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 9 3 + 43.891 0 0 4.5042 4.5042 90.61 0 0 0 7.024393559295277 25.9864468880481 7.024393559295277 43.89129674262179 0 2.004432191740108 0 0 0.8494850021680094 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[SG]V{M(Oxidation (M))|F}SA{M(Oxidation (M))|F} 4.5042 - 98 NaN NaN 129400.1 NaN 14452 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18217 76.434 NaN 271420 35 0 28972 0.261 + -1 CWIKCRQCL 9 62 403.8612732165416 NaN 0 403.8615417480469 PEAK HCD FTMS 0 0 0 18211 112121.203125 0.20359760872525876 6 -0.16996002197265625 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))WIKCRQCL_ REV__ENST00000440114.1_1_2:198362106-198364543:-|nuORF 2.498486711656943 0.28313952434011336 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.86752 0 0 171.5013417438269 484.13727747135005 655.638619215177 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.86752 - 7 + NaN NaN 125571.2 NaN 14453 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18218 76.438 NaN 343940 35 0 66268 0.261 -1 MKGLRLTI 8 49 474.2907986333884 NaN 0 474.29083251953125 PEAK HCD FTMS 0 0 0 18211 73112.671875 0.2502088366204091 2 -0.05879974365234375 7 Oxidation (M) _M(Oxidation (M))KGLRLTI_ ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 2.302733041254933 0.38822285293237185 2 T 1 -1 8.9794 0 0 0.94863 0 0 620.4082441400207 222.0881746881469 842.4964188281675 0 0 0 0 0 0 0 0.5 0 T 0.94863 + + 32 + NaN NaN 137068.4 NaN 14454 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18219 76.441 NaN 307690 35 0 26814 0.261 + 30428 VLPHFNVLF 9 69 543.3109352153486 1084.6073174974972 2 543.3107299804688 MULTI HCD FTMS 0 0 0 18211 126398.2421875 0.689247777695415 1 -0.0293731689453125 8 Unmodified _VLPHFNVLF_ ENSG00000103043|ENST00000261776|VAC14 28.486842064014134 0.11819662193267319 2 V{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.3374 0 0 707.3769398419937 0 707.3769398419937 0 26.40469612749854 0 0 0 1 0 0 0 + V{I|L}{M(Oxidation (M))|F} 3.3374 + + 42 NaN NaN 133774.8 NaN 14455 3762 18211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18221 76.446 NaN 4397300 35 0 815740 0.327 + 28528 TPQFPDMIL 9 83 539.26788511357 1076.5212172939398 2 539.2681274414062 MULTI HCD FTMS 0 0 0 18220 3499567.75 0.17965399039235527 25 -0.6867141723632812 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 114.20165948288297 0.0022564706844261533 2 [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 84.559 0 0 7.8548 7.8548 87.337 0 0 0 0.39590623023812554 16.478174818886387 0.39590623023812554 0.39590623023812554 0 2.1861818737241734 0 1.4194451763165201 0.5649093276264391 + + [TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L};[TP]W[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[TP]WA{[ET]|[MV]}{M(Oxidation (M))|F}{I|L}{I|L} 7.8548;7.818;6.9104;6.4747;6.4247;4.0776;3.6033 +;-;-;-;-;-;- + 1187 NaN NaN 628402.6 NaN 14456 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18222 76.45 NaN 560780 35 0 31812 0.261 + 12404 KPGKGARAE 9 84 457.2642804947058 912.5140080562117 2 457.2642517089844 MULTI HCD FTMS 0 0 0 18220 571433.375 0.760066106193881 7 -0.2030181884765625 2 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 10.911 0 0 1.1957 0 0 414.2468423151429 367.1970438900882 781.4438862052311 0 0 0 0 0 0.6307196863200843 0 0 0 Q 1.1957 - 55 + NaN NaN 179102.3 NaN 14457 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18223 76.454 NaN 921850 35 0 129310 0.261 + 7381 FVHDLVLYL 9 83 559.8157438339699 1117.6169347347397 2 559.8159790039062 MULTI HCD FTMS 0 0 0 18220 395998.40625 0.4064110119867357 -4 0.1109161376953125 3 Unmodified _FVHDLVLYL_ CLTC-VMP1|12|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC 36.04419817259434 0.08350412372117409 2 V{I|L}Y{I|L} 4 5 44.24 0 0 3.9584 0 0 611.3062611310562 0 611.3062611310562 0 25.656753288559813 0 0 0 1.3807196863200843 0 0 0 + V{I|L}Y{I|L} 3.9584 + + 199 NaN NaN 239300.1 NaN 14458 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18224 76.457 NaN 224850 35 0 15383 0.262 + 32617 WLLVLCAL 8 63 465.7774943895481 929.5404358458962 2 465.77734375 MULTI HCD FTMS 0 0 0 18220 206443.5 0.3035223837806322 7 -0.2030181884765625 4 Unmodified _WLLVLCAL_ ENSG00000100612|ENST00000557185|DHRS7;ENST00000555171.1_1_14:60622706-60632135:-|nuORF;ENST00000556502.1_1_14:60619584-60632027:-|nuORF 2.8892196856762586 0.5377058178582064 2 V 1 7 3.9794 0 0 0.4281 0 0 603.3454112871057 224.0978182428344 827.44322952994 0 0 0 0 0 0 0 0 0 + V 0.4281 + + 19 + NaN NaN 125837.7 NaN 14459 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18225 76.46 NaN 135190 35 0 11873 0.261 + 1227 AYLLYSLHL 9 47 546.808255708793 NaN 0 546.8085327148438 PEAK HCD FTMS 0 0 0 18220 13875.2373046875 0.057115879287139126 9 -0.24535369873046875 5 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 44.40701690623563 0.06414185948616917 2 {I|L}{I|L}Y 3 6 32.747 0 0 2.9999 0 0 234.09701538880296 465.2475985162719 699.3446139050749 0 0 0 0 0 1.805462187404089 0 0 0 + {I|L}{I|L}Y 2.9999 + + 18 + NaN NaN 122165.3 NaN 14460 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18226 76.464 NaN 156330 35 0 26096 0.261 -1 CWFPFFFVL 9 45 631.8080033406432 1261.6014537480862 2 631.8079833984375 MULTI HCD FTMS 0 0 0 18220 71984.0234375 0.33436098854051405 4 -0.1077117919921875 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))WFPFFFVL_ ENSG00000171873|ENST00000379453|ADRA1D 5.230669730166228 0.3113646817964458 2 V{I|L} 2 -1 25.969 0 0 2.0584 0 0 1031.4386156041398 0 1031.4386156041398 0 21.989700043360187 0 0 0 0.5 0 0 0 V{I|L} 2.0584 + + 6 NaN NaN 110067.2 NaN 14461 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18227 76.467 NaN 206370 35 0 21281 0.261 -1 LYCVCIEIL 9 52 563.2866431189984 1124.5587333047968 2 563.2857055664062 MULTI HCD FTMS 0 0 0 18220 44935.68359375 0.36050174570249444 5 -0.14058685302734375 7 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))VCIEIL_ ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR 12.531546534597751 0.2520865569484384 2 {I|L}{I|L} 2 -1 24.464 0 0 2.1754 0 0 880.3781879094576 0 880.3781879094576 0 24.463950151760656 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.1754 + + 11 NaN NaN 128889.3 NaN 14462 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18228 76.47 NaN 134440 35 0 11060 0.264 + 25565 SFRTWCAPEE 10 42 409.1834237347458 NaN 0 409.18365478515625 PEAK HCD FTMS 0 0 0 18220 12242.2138671875 0.09905771316247863 7 -0.2030181884765625 8 Unmodified _SFRTWCAPEE_ REV__ENST00000448759.1_1_1:43352960-43353698:-|nuORF 1.4819007175156935 0.33891598740166873 2 {I|L}{I|L} 2 -1 8.5835 0 0 1.0514 0 0 56.96241660822643 530.1987398736936 587.1611564819201 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.0514 - 7 + NaN NaN 106400.7 NaN 14463 3763 18220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18230 76.475 NaN 1724600 35 0 272470 0.327 + 5982 FPDQVAIQL 9 73 515.7819895057114 1029.5494260782227 2 515.7821044921875 MULTI HCD FTMS 0 0 0 18229 1064759.75 0.28834433373706136 -14 0.35767364501953125 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 76.82478488871298 0.006879825292024087 2 QVA{I|L}Q{I|L} 6 3 68.18 0 0 6.6224 0 0 359.14814955879064 0 359.14814955879064 0 33.711827458464256 0 0 0 2.274227503252014 0 0 0.7302046884880937 + QVA{I|L}Q{I|L} 6.6224 + + 558 NaN NaN 351134.8 NaN 14464 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18231 76.48 NaN 311610 35 0 62867 0.261 + 34740 YPVSKPDVI 9 46 509.28442933899476 1016.5543057447895 2 509.2843933105469 MULTI HCD FTMS 0 0 0 18229 146965.78125 0.08006206050097016 12 -0.327117919921875 2 Unmodified _YPVSKPDVI_ ENSG00000145908|ENST00000274599|ZNF300;nc|ENSG00000145908|Q96RE9-2|ZNF300;nc|ENSG00000145908|Q96RE9-3|ZNF300;nc|ENSG00000145908|Q96RE9-4|ZNF300 14.838274106304384 0.23215694253501695 2 V{I|L} 2 7 25.217 0 0 2.4806 0 0 786.3923207772146 0 786.3923207772146 0 14.75895023531386 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.4806 + + 24 NaN NaN 126101.9 NaN 14465 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18232 76.483 NaN 214270 35 0 43843 0.261 + 33285 YFLNEIIF 8 50 529.7808438407325 NaN 0 529.7633056640625 PEAK HCD FTMS 0 0 0 18229 9524.6806640625 0.2815016754552303 1 -0.0260772705078125 3 Unmodified _YFLNEIIF_ REV__ENST00000278616.8_1_11:108151731-108151785:+|nuORF 6.354104778181461 0.38822285293237185 2 {M(Oxidation (M))|F}Y 2 -1 10.969 0 0 1.0372 0 0 131.13102683973563 613.2617281549436 744.3927549946793 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 1.0372 - 30 + NaN NaN 129705 NaN 14466 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18233 76.487 NaN 142580 35 0 15847 0.261 + 29039 TYFDSVFRL 9 57 574.2930192409376 1146.5714855486751 2 574.2936401367188 MULTI HCD FTMS 0 0 0 18229 63432.015625 0.8027969411583008 1 -0.0260772705078125 4 Unmodified _TYFDSVFRL_ ENSG00000111300|ENST00000261745|NAA25;ENST00000549711.5_1_12:112487373-112518932:-|nuORF;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;nc|ENSG00000111300|Q14CX7-2|NAA25 24.990960013464015 0.14443998892849796 2 [YT]{M(Oxidation (M))|F}D 4 5 37.435 0 0 3.265 0 0 0 617.3429659479124 617.3429659479124 24.987737688117235 0 0 0 0 0.4247425010840047 2 0 0 + [YT]{M(Oxidation (M))|F}D 3.265 + + 20 + NaN NaN 112938.3 NaN 14467 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18234 76.49 NaN 176740 35 0 23920 0.261 -1 CWFPFFFVL 9 47 631.8080033406432 1261.6014537480862 2 631.807861328125 MULTI HCD FTMS 0 0 0 18229 30345.533203125 0.14095297810625199 5 -0.1407470703125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))WFPFFFVL_ ENSG00000171873|ENST00000379453|ADRA1D 5.230669730166228 0.3113646817964458 2 V{I|L} 2 -1 25.969 0 0 2.0584 0 0 1031.438804365824 0 1031.438804365824 0 21.989700043360187 0 0 0 0.5 0 0 0 V{I|L} 2.0584 + + 8 NaN NaN 108027 NaN 14468 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18235 76.493 NaN 346270 35 0 34272 0.262 -1 0 77 526.7731478192227 1051.5317427052453 2 526.77294921875 MULTI HCD FTMS 0 0 0 18229 90741.109375 0.1696551549663058 -14 0.35767364501953125 6 NaN NaN 2 {I|L}MDQVA{I|L} 7 -1 76.564 0 0 7.2812 0 0 0 278.1119783990844 278.1119783990844 64.17358221842868 0 0 0 0 1.9119543704721593 1.5228787452803376 0.4247425010840047 0.3054621874040891 {I|L}MDQVA{I|L} 7.2812 - 199 + NaN NaN 145249.4 NaN 14469 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18236 76.497 NaN 189960 35 0 14491 0.261 + 22310 QPGWLAKH 8 63 468.7574879447948 NaN 0 468.7340087890625 PEAK HCD FTMS 0 0 0 18229 11032.3388671875 0.20411466917824347 2 -0.05217742919921875 7 Unmodified _QPGWLAKH_ ITIH2|p.R204W|1|0.15|ENSG00000151655|chr10:7717768-7717768|C/T|missense_variant 5.230669730166228 0.38822285293237185 2 Q{M(Oxidation (M))|F} 2 7 9.7982 0 0 1.0474 0 0 98.11750166908332 559.2324312799436 657.349932949027 0 0 0 0 0 0 0 0 0.3054621874040891 Q{M(Oxidation (M))|F} 1.0474 - 19 + NaN NaN 116562.1 NaN 14470 3764 18229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18238 76.501 NaN 1237600 35 0 206110 0.327 + 35511 YYFSKLIEF 9 88 605.313031533974 1208.611510134748 2 605.3134155273438 MULTI HCD FTMS 0 0 0 18237 695582.0625 0.10793083411769853 6 -0.16371917724609375 1 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 110.5527297667825 0.0028521687250969148 2 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 102.81 0 0 8.5062 8.5062 91.521 0 0 0 10.177039472962534 10.177039472962534 10.177039472962534 8.143017512201268 0 2.6989700043360187 2 1.3243923658886185 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}E{I|L}{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}YY{I|L}{I|L}E{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}YY{I|L}E{I|L}{M(Oxidation (M))|F};YYV[K{I|L}][{M(Oxidation (M))|F}T]E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}[EP]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}[EP][WY]{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}YY{M(Oxidation (M))|F}[KS]{M(Oxidation (M))|F} 8.5062;7.8324;6.4857;5.8119;3.785;3.1112;2.4869;1.6041;1.4584;1.4206 +;-;-;-;-;-;-;-;-;- + 536 NaN NaN 279070.5 NaN 14471 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18239 76.506 NaN 1100200 35 0 80982 0.261 + 27146 SYMWTINNF 9 102 596.2605005992127 1190.5064482652253 2 596.2605590820312 MULTI HCD FTMS 0 0 0 18237 678911.875 0.6794875283404159 -4 0.11104583740234375 2 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 142.0795815696625 1.719916958814042E-05 2 CCEWT{I|L}NG{[CT]|[{M(Oxidation (M))|F}G]} 10 5 81.292 0 0 6.8283 0 0 62.04424735512459 0 62.04424735512459 0 47.78155660125644 0 0 0 1.9247425010840047 0 1.4921276860725623 1.4436726795685342 CCEWT{I|L}NG{[CT]|[{M(Oxidation (M))|F}G]} 6.8283 - 7429 + NaN NaN 250018.1 NaN 14472 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18240 76.509 NaN 456200 35 0 30225 0.261 + -1 CQMCKFLI 8 76 550.2590287363187 1098.5035045394372 2 550.2593994140625 MULTI HCD FTMS 0 0 0 18237 251170.140625 0.10065190702336889 20 -0.5396652221679688 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))QMC(Carbamidomethyl (C))KFLI_ REV__ZNF682|p.K171I|1|0.22|ENSG00000197124|chr19:20006990-20006990|T/A|missense_variant 14.581692164780916 0.48650662947107914 2 Q{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 51.528 0 0 4.6908 0 0 220.07698256660314 0 220.07698256660314 0 11.631353720740805 0 0 0 1.6307196863200843 0 0 0.6989700043360187 Q{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L} 4.6908 - 233 NaN NaN 152209.8 NaN 14473 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18241 76.513 NaN 458660 35 0 46233 0.261 -1 RELFLAKVMT 10 88 612.3445658824992 1222.6745788317983 2 612.3445434570312 MULTI HCD FTMS 0 0 0 18237 74826.3203125 0.9132676155102097 1 -0.02610015869140625 4 Oxidation (M) _RELFLAKVM(Oxidation (M))T_ ENST00000588578.5_1_19:37998087-37999218:+|nuORF 8.155526934196011 0.43213520406898465 2 DN[YC(Carbamidomethyl (C))]{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 8 -1 24.473 0 0 2.0016 0 0 164.26685033406585 0 164.26685033406585 0 20.456349637772746 0 0 0 0 0 0.4247425010840047 0.6747425010840047 DN[YC(Carbamidomethyl (C))]{I|L}N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 2.0016 - 251 + NaN NaN 151621.5 NaN 14474 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18242 76.516 NaN 284310 35 0 29187 0.263 + 23876 RSSEKLVR 8 64 487.79076118320455 973.5669694332091 2 487.7914123535156 MULTI HCD FTMS 0 0 0 18237 34582.16796875 0.21495798125898205 -13 0.34506988525390625 5 Unmodified _RSSEKLVR_ ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 4.3292370932331545 0.5355693454741696 2 {M(Oxidation (M))|F} 1 8 16.99 0 0 1.7451 0 0 808.4884457289107 0 808.4884457289107 0 8.931344021611157 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7451 - 90 + NaN NaN 131967 NaN 14475 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18243 76.519 NaN 122860 35 0 7768.5 0.261 + 27046 SYMFVDENTF 10 52 626.763148665882 1251.511744398564 2 626.7637329101562 MULTI HCD FTMS 0 0 0 18237 27171.564453125 0.724321388697 1 -0.02610015869140625 6 Unmodified _SYMFVDENTF_ ENSG00000134590|ENST00000257013|RTL8C;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000212747|ENST00000391440|RTL8B;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000522309.1_1_X:134185341-134186138:-|nuORF 14.405379775768559 0.37636895476610294 2 {M(Oxidation (M))|F}NV 3 8 17.435 0 0 1.3931 0 0 381.1362083651639 507.17124353580317 888.3074519009671 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}NV 1.3931 - 67 + NaN NaN 115935.2 NaN 14476 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18244 76.523 NaN 71320 35 0 14624 0.263 + -1 SQCSVPLCV 9 35 496.72991943359375 NaN 0 496.72991943359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _SQC(Carbamidomethyl (C))SVPLCV_ REV__ENSG00000221864|ENST00000360770|KRTAP12-2 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97361.7 NaN 14477 3765 18237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18246 76.527 NaN 11419000 35 0 1279000 0.327 + 13557 KYPENFFLL 9 106 585.8131605635726 1169.6117681939452 2 585.8139038085938 MULTI HCD FTMS 0 0 0 18245 8183324.5 0.041598092433792574 41 -0.974334716796875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 128.93241758739586 0.0006697181619526092 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.681 0 0 8.0951 8.0951 92.183 0 0 0 10.442613861414202 55.10696766396192 10.442613861414202 9.208187539523749 0 2.555462187404089 0 0.25 1.9793395554607172 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KYPEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 8.0951;7.3078;7.2508;7.1648;6.9644;6.4635;6.3775;6.3412;6.3205;6.1771 +;-;-;-;-;-;-;-;-;- + 9372 NaN NaN 567349.3 NaN 14478 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18247 76.532 NaN 1971400 35 0 254960 0.261 + 17111 LYLGLFNRL 9 80 554.8292396668196 1107.643926400439 2 554.8294677734375 MULTI HCD FTMS 0 0 0 18245 497525.90625 0.29350859529823714 5 -0.1376190185546875 2 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 112.59319219568356 0.00251905749371435 2 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 10 2 + 98.643 0 0 8.9056 8.9056 90.154 0 0 0 26.98945184671841 10.511277027832037 10.511277027832037 3.521825181113627 0 2.841129063296272 1.6989700043360187 0 0.28872548999643577 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}{I|L}[RN];[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{I|L}{I|L}[RN]{M(Oxidation (M))|F};{I|L}Y{I|L}G{M(Oxidation (M))|F}G{I|L}GR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 8.9056;8.5877;8.0184;7.9567;7.7004;7.4564;7.3463;7.2002;6.7718;6.7419 -;+;-;+;-;-;-;-;-;- + 1908 + NaN NaN 401504.4 NaN 14479 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18248 76.535 NaN 719540 35 0 191670 0.261 + 10576 IPLEEGELEL 10 76 571.3032374431773 1140.5919219531545 2 571.30322265625 MULTI HCD FTMS 0 0 0 18245 477728.5625 0.2954841394747723 5 -0.1376190185546875 3 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 62.57269311338072 0.03206542651389879 2 EEW{I|L}E{I|L} 6 5 67.766 0 0 5.9413 0 0 323.22068984199376 0 323.22068984199376 0 58.72486274231747 0 0 0 1.8494850021680094 0 0.75 0 EEW{I|L}E{I|L} 5.9413 - 217 NaN NaN 214780.8 NaN 14480 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18249 76.539 NaN 332930 35 0 36407 0.261 -1 LYMPKLLYF 9 72 602.3278370299845 NaN 0 602.3126220703125 PEAK HCD FTMS 0 0 0 18245 11165.6875 0.2586743520440128 3 -0.08856964111328125 4 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 23.1484247019978 0.16626532474190622 2 YVVP{I|L}GM 7 -1 13.689 0 0 1.1382 0 0 165.10516746682316 275.1396578424438 440.24482530926696 0 0 0 0 0 0.5 0 0 0 YVVP{I|L}GM 1.1382 - 124 + NaN NaN 143044.8 NaN 14481 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18250 76.542 NaN 134630 35 0 15003 0.261 + 29528 TYVYFTNEL 9 56 575.2771929247841 1148.5398329163681 2 575.793212890625 MULTI HCD FTMS 0 0 0 18245 12320.419921875 0.32759927085389035 4 -0.1214141845703125 5 Unmodified _TYVYFTNEL_ ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10 28.494509381512117 0.11816142465008336 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TN{[QN]|[E{I|L}]|[KN]} 9 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L} + + 27.502 5.0617 1.3937 2.3945 2.3945 59.844 0 0 0 0 14.31417813229345 0 0 0 1.5669015600442577 0 0.5 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}Y{M(Oxidation (M))|F}TN{[QN]|[E{I|L}]|[KN]} 2.3945 - 93 + NaN NaN 108937 NaN 14482 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18251 76.545 NaN 123950 35 0 12443 0.261 + 32793 WSHGFLGLF 9 56 532.2715104949518 1062.5284680567036 2 532.7727661132812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _WSHGFLGLF_ REV__ENST00000296785.7_1_5:72858805-72861416:-|nuORF 21.74664581756881 0.17247014374749275 2 T{I|L}G{I|L}{M(Oxidation (M))|F} 5 -1 36.96 0 0 3.4785 0 0 513.2339955060562 0 513.2339955060562 0 26.50256016532314 0 0 0 0.9247425010840047 0 0 0 T{I|L}G{I|L}{M(Oxidation (M))|F} 3.4785 - 65 NaN NaN 107080.5 NaN 14483 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18252 76.549 NaN 379280 35 0 47883 0.261 + -1 TYENDCHFK 9 81 607.2513847858656 1212.4882166385312 2 607.7529296875 MULTI HCD FTMS 0 0 0 18245 42767.41015625 0.6365865338379763 -2 0.05217742919921875 7 Carbamidomethyl (C) _TYENDC(Carbamidomethyl (C))HFK_ REV__tr|U7T3V9|U7T3V9_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00635PE=4SV=1 6.723162845929126 0.3000504726104499 2 [Y{I|L}]N[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 8 -1 21.604 0 0 1.7818 0 0 0 127.89435057477785 127.89435057477785 5.406075122407682 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]N[R{I|L}]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 1.7818 - 485 NaN NaN 159577.6 NaN 14484 3766 18245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18254 76.554 NaN 867260 35 0 97960 0.326 + 25886 SMTRYFYLF 9 80 614.2956938928323 1226.5768348524646 2 614.2970581054688 MULTI HCD FTMS 0 0 0 18253 451515.5 0.37902052789493224 6 -0.14719390869140625 1 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 49.55428908609986 0.03219431099695407 2 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 7 + 60.652 0 0 4.9448 4.9448 88.684 0 0 0 12.917112166456448 24.74468968362664 12.917112166456448 13.337359645711324 0 0.5 1.3010299956639813 0.8494850021680094 0.3054621874040891 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}][WH]{[DA]|[EG]}Y{I|L}{M(Oxidation (M))|F};[YN]AWV{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};[YN]AWV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PS]{M(Oxidation (M))|F};[Y{I|L}][WH]{[DA]|[EG]}{I|L}Y{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};[Y{M(Oxidation (M))|F}][HS]V[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}[RN]WAEE;[Y{I|L}]{M(Oxidation (M))|F}[NG]V[VS]AEE;[Y{I|L}]EEV[{M(Oxidation (M))|F}V]AEE 4.9448;3.8575;3.1521;2.9493;2.6127;2.2141;2.1064;2.0023;1.7877;1.5989 -;-;-;-;-;-;-;-;-;- 1403 NaN NaN 221353 NaN 14485 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18255 76.558 NaN 617750 35 0 65738 0.261 + 11358 IYNGKLFDLL 10 103 598.3397450461429 1194.6649371590856 2 598.3397827148438 MULTI HCD FTMS 0 0 0 18253 143149.15625 0.016294809995590187 22 -0.6049346923828125 2 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 93.16586880292088 0.0007594237434582029 2 [Y{I|L}]N[KG]{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 78.471 0 0 6.5684 6.5684 88.871 0 0 0 23.17307887791513 54.27968871558013 23.17307887791513 9.164539485499262 0 1.6861818737241734 2 0.2742275032520141 0.5501648626366046 + + [Y{I|L}]N[KG]{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GG[KG]{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]N[Y{I|L}]NG{I|L}{I|L}{I|L};[Y{I|L}]N[KG]{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}{I|L};[Y{I|L}]N[KG]{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]GG[Y{I|L}]NG{I|L}{I|L}{I|L};[Y{I|L}]N[Y{I|L}]GGG{I|L}{I|L}{I|L};[Y{I|L}]GG[KG]{I|L}EV{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[KG]NY{I|L}{I|L};[Y{I|L}]N[KG]V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L} 6.5684;5.8013;4.4272;4.1763;4.1417;3.6601;3.6601;3.3745;3.1222;2.995 +;-;-;-;-;-;-;-;-;- + 1796 NaN NaN 185161.2 NaN 14486 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18256 76.562 NaN 479010 35 0 55617 0.261 + 15201 LNHLVPDIAW 10 62 589.3202632053724 1176.6259734775447 2 589.3193969726562 MULTI HCD FTMS 0 0 0 18253 140856.09375 0.05552117384854964 11 -0.3045196533203125 3 Unmodified _LNHLVPDIAW_ REV__ENSG00000179002|ENST00000375371|TAS1R2 16.149105407346934 0.3600587335443843 2 YY{I|L}{I|L}[HV]{I|L}A 8 -1 53.901 0 0 4.581 0 0 0 201.0640359029235 201.0640359029235 32.70303756120384 0 0 0 0 1.8494850021680094 1.6989700043360187 0 0 YY{I|L}{I|L}[HV]{I|L}A 4.581 - 270 NaN NaN 167398.3 NaN 14487 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18257 76.565 NaN 291860 35 0 37578 0.261 + 15588 LPDVSLQEF 9 55 524.2713132703586 1046.5280736075172 2 524.2716674804688 MULTI HCD FTMS 0 0 0 18253 91357.65625 0.14216139373402448 8 -0.21929168701171875 4 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 45.69961567697781 0.039180348357221985 2 QE{M(Oxidation (M))|F} 3 6 47.624 0 0 4.5507 0 0 624.3489181893516 0 624.3489181893516 0 36.387189367729235 0 0 0 1.5 0 0.805462187404089 0.28872548999643577 + QE{M(Oxidation (M))|F} 4.5507 + + 119 + NaN NaN 129437.6 NaN 14488 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18258 76.568 NaN 352690 35 0 135050 0.261 -1 YCHECGKSF 9 50 565.7236623120219 1129.4327716908438 2 565.7233276367188 MULTI HCD FTMS 0 0 0 18253 58362.7109375 0.05483504242506952 18 -0.487457275390625 5 Carbamidomethyl (C) _YC(Carbamidomethyl (C))HECGKSF_ ENSG00000187626|ENST00000377294|ZKSCAN4 2.0597508629832335 0.3354026079994024 2 S{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8566 0 0 877.3224944465063 0 877.3224944465063 0 13.979400086720375 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.8566 + + 43 + NaN NaN 148219.6 NaN 14489 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18259 76.572 NaN 752500 35 0 73109 0.261 + 27030 SYLSSILRF 9 87 543.302988912616 1084.591424892032 2 543.3008422851562 MULTI HCD FTMS 0 0 0 18253 160603.203125 0.09177763803301472 -7 0.18927764892578125 6 Unmodified _SYLSSILRF_ ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 96.36657018975838 0.004359138328518304 2 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8 2 83.793 0 0 7.7258 0 0 193.07019451138518 0 193.07019451138518 0 66.74192470873962 0 0 0 2.579689690656103 0 0.3494850021680094 0 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 7.7258 - 431 + NaN NaN 203504.4 NaN 14490 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18260 76.575 NaN 179270 35 0 13649 0.261 + 33754 YLEYLQNRF 9 61 623.3186445325364 1244.6227361318727 2 623.320068359375 MULTI HCD FTMS 0 0 0 18253 40586.875 0.6501514492504691 4 -0.11151123046875 7 Unmodified _YLEYLQNRF_ ENSG00000136244|ENST00000258743|IL6 11.640296217721598 0.25978676193971967 2 T 1 9 12.742 0 0 1.0238 0 0 405.20149428535314 735.3382872395476 1140.5397815249007 0 0 0 0 0 0.9247425010840047 0 0 0 T 1.0238 - 24 NaN NaN 115818.9 NaN 14491 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18261 76.578 NaN 177750 35 0 40671 0.264 + 26714 SYCYPPLC 8 59 473.1958461409681 944.3771393487363 2 473.1958312988281 MULTI HCD FTMS 0 0 0 18253 46142.5859375 0.058703064094183625 11 -0.3045196533203125 8 Unmodified _SYCYPPLC_ REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF 5.230669730166228 0.5342319408533849 2 WE{I|L}Y 4 -1 34.227 0 0 3.6243 0 0 0 350.08381067447505 350.08381067447505 26.267959391884546 0 0 0 0 0.7059771852360797 0 0 0 WE{I|L}Y 3.6243 - 85 + NaN NaN 120410.7 NaN 14492 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18262 76.582 NaN 210980 35 0 14439 0.261 + -1 TLCVRCFL 8 72 506.26068435416363 1010.5068157751273 2 506.2607727050781 MULTI HCD FTMS 0 0 0 18253 50829.43359375 1 0 0 9 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))VRCFL_ REV__ENSG00000204614|ENST00000396581|TRIM40;REV__nc|ENSG00000204614|Q6P9F5-2|TRIM40 5.230669730166228 0.5342319408533849 2 P{[ET]|[MV]}QP 5 -1 18.94 0 0 1.8743 0 0 440.22603041816564 0 440.22603041816564 0 15.339570197596062 0 0 0 0.5 0 0 0.4247425010840047 P{[ET]|[MV]}QP 1.8743 - 54 NaN NaN 129665.2 NaN 14493 3767 18253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18264 76.586 NaN 1138800 35 0 120200 0.327 + 27031 SYLSSILRF 9 82 543.302988912616 1084.591424892032 2 543.302734375 MULTI HCD FTMS 0 0 0 18263 408833.4375 0.2336302546435787 -6 0.16996002197265625 1 Unmodified _SYLSSILRF_ ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 106.94017166704063 0.003441928997083001 2 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8 2 88.353 0 0 8.1462 0 0 193.07280867867308 0 193.07280867867308 0 68.6032911501178 0 0 0 2.6989700043360187 0 0.6861818737241735 0 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8.1462 - 505 + NaN NaN 259907 NaN 14494 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18265 76.591 NaN 291530 35 0 16033 0.261 + 29669 VASIAGGIRN 10 73 479.277491538702 956.540430144204 2 479.2774963378906 MULTI HCD FTMS 0 0 0 18263 232944.6875 0.8960190228080531 -5 0.14058685302734375 2 Unmodified _VASIAGGIRN_ ENSG00000060971|ENST00000333167|ACAA1;nc|ENSG00000060971|P09110-2|ACAA1 8.745405648335112 0.42901288225909884 2 S 1 9 9.4897 0 0 0.99209 0 0 370.2213516303353 496.2598971002563 866.4812487305916 0 0 0 0 0 0.25 0 0 0 + S 0.99209 + + 82 + NaN NaN 148507.1 NaN 14495 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18266 76.595 NaN 239300 35 0 25041 0.261 + 14625 LFWFFCKNQ 9 57 616.8015097032227 NaN 0 616.7865600585938 PEAK HCD FTMS 0 0 0 18263 18955.4375 0.3432441113619109 6 -0.15355682373046875 3 Unmodified _LFWFFCKNQ_ ENST00000568684.1_1_16:69958981-69959194:+|nuORF 9.347437153973935 0.2499504662953367 2 {I|L}EH 3 8 16.471 0 0 1.3374 0 0 183.1210538998651 666.2460421197874 849.3670960196525 0 0 0 0 0 0 0 0.6549471895720984 0 {I|L}EH 1.3374 - 34 + NaN NaN 132217.6 NaN 14496 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18267 76.598 NaN 199710 35 0 13586 0.262 + 31326 VWSTFSATL 9 58 506.26068435416363 1010.5068157751273 2 506.2605895996094 MULTI HCD FTMS 0 0 0 18263 36979.88671875 0.7275289946039661 1 -0.0295867919921875 4 Unmodified _VWSTFSATL_ REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF 10.823927491677226 0.26684000660059787 2 PD{[QD]|[EN]|[WG]|[KD]|[RS]}P 5 -1 18.43 0 0 1.8238 0 0 440.2257252423844 0 440.2257252423844 0 8.87726867220145 0 0 0 0.5 0 0 0.3252574989159953 PD{[QD]|[EN]|[WG]|[KD]|[RS]}P 1.8238 - 44 NaN NaN 122771 NaN 14497 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18268 76.601 NaN 198930 35 0 12788 0.261 + -1 YLWDCVQLF 9 70 622.2934226153319 1242.5722922974637 2 622.2942504882812 MULTI HCD FTMS 0 0 0 18263 59538.41015625 0.534099632083249 -6 0.16996002197265625 5 Carbamidomethyl (C) _YLWDC(Carbamidomethyl (C))VQLF_ REV__ENSG00000133104|ENST00000438666|SPART;REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF 19.256988751693697 0.19398022840297344 2 [Y{I|L}]N 3 -1 32.447 0 0 2.6113 0 0 0 849.3601700652949 849.3601700652949 8.624824747511752 0 0 0 0 0.5 2 0 0 [Y{I|L}]N 2.6113 - 130 NaN NaN 111544.3 NaN 14498 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18269 76.604 NaN 123310 35 0 6645.7 0.261 + -1 DEDCGPNLSCK 11 55 619.2432892198649 1236.4720255065297 2 619.7471923828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _DEDCGPNLSC(Carbamidomethyl (C))K_ REV__ENSG00000155629|ENST00000339364|PIK3AP1;REV__nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 9.5439744041441 0.373925449867384 2 ED{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.1188 0 0 827.310838767775 0 827.310838767775 0 10.713337517843655 0 0 0 0 0 0 0 ED{M(Oxidation (M))|F} 2.1188 - 27 NaN NaN 105629.5 NaN 14499 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18270 76.608 NaN 117980 35 0 11198 0.261 + -1 SQSNRPNVLVC 11 55 637.3217163085938 NaN 0 637.3217163085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _SQSNRPNVLVC(Carbamidomethyl (C))_ REV__ENSG00000184381|ENST00000332509|PLA2G6;REV__ENST00000471636.5_1_22:38522531-38565433:-|nuORF;REV__nc|ENSG00000184381|O60733-2|PLA2G6;REV__nc|ENSG00000184381|O60733-3|PLA2G6;REV__nc|ENSG00000184381|O60733-4|PLA2G6 2.9952420565917617 0.33362350433860827 2 EEV 3 -1 13.188 0 0 1.0362 0 0 132.12867712915437 780.3238009088499 912.4524780380043 0 0 0 0 0 0 0 0 0 EEV 1.0362 - 10 + NaN NaN 113296.9 NaN 14500 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18271 76.611 NaN 228870 35 0 26833 0.264 + 10289 IKSLDDSSNET 11 58 403.52696373829264 1207.559061815078 3 403.8611755371094 MULTI HCD FTMS 0 0 0 18263 11276.474609375 0.2763886801160022 -5 0.14058685302734375 8 Unmodified _IKSLDDSSNET_ ENSG00000198797|ENST00000361539|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;nc|ENSG00000198797|Q9C0B6-2|BRINP2 4.189502756095605 0.4005469306127019 2 KY 2 10 20.969 0 0 1.7365 0 0 0 913.3772864371789 913.3772864371789 0 0 0 0 0 0 0 0 0 KY 1.7365 - 28 + NaN NaN 118182.7 NaN 14501 3768 18263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18273 76.616 NaN 2258900 35 0 412080 0.327 + 28529 TPQFPDMIL 9 74 539.26788511357 1076.5212172939398 2 539.2681274414062 MULTI HCD FTMS 0 0 0 18272 1926713.25 0.09890985071065522 31 -0.7134933471679688 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 82.5293158979368 0.005033931517079822 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 79.932 0 0 7.425 7.425 92.498 0 0 0 5.6424927368725974 62.941993906176776 5.6424927368725974 12.034021960761265 0 1.8807196863200843 0 1.4291746928241125 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]{M(Oxidation (M))|F}TPD{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}PTPD{M(Oxidation (M))|F}{I|L}{I|L} 7.425;6.3071;5.5843 -;-;- 532 NaN NaN 432309.7 NaN 14502 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18274 76.62 NaN 3255100 35 0 556780 0.261 + 5983 FPDQVAIQL 9 76 515.7819895057114 1029.5494260782227 2 515.7822265625 MULTI HCD FTMS 0 0 0 18272 2148256.25 0.5817627094776338 -9 0.251739501953125 2 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 96.36657018975838 0.004359138328518304 2 QVA{I|L}Q{I|L} 6 3 70.539 0 0 6.8514 0 0 359.14805800605626 0 359.14805800605626 0 46.89387834276005 0 0 0 2.3494850021680094 0 0 1.1549471895720984 + QVA{I|L}Q{I|L} 6.8514 + + 765 NaN NaN 585810.7 NaN 14503 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18275 76.624 NaN 1792300 35 0 247230 0.261 + 7382 FVHDLVLYL 9 93 559.8157438339699 1117.6169347347397 2 559.8160400390625 MULTI HCD FTMS 0 0 0 18272 627241 0.6437340290926286 2 -0.04904937744140625 3 Unmodified _FVHDLVLYL_ CLTC-VMP1|12|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC 64.23631603340823 0.01165516075559909 2 {NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}Y{I|L} 9 4 + 66.454 0 0 5.946 5.946 87.28 0 0 0 10.826958272274894 15.813995467886798 10.826958272274894 8.283161130202487 0 1.5 1.5228787452803376 0.6382104921644451 0 {NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}Y{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}VY{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}{I|L}Y;[Y{I|L}]V{[{M(Oxidation (M))|F}H]|[RQ]}VD{I|L}{I|L};[Y{I|L}][{I|L}P][HS]{I|L}Y{I|L};[Y{I|L}]V{[{M(Oxidation (M))|F}H]|[RQ]}VEV{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}YV{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{[{M(Oxidation (M))|F}H]|[RQ]}Y{I|L}V{I|L};[Y{I|L}]V{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L}D{I|L};{NN|[MP]|[D{I|L}]|[EV]}V{I|L}Y{[{M(Oxidation (M))|F}H]|[RQ]}V{I|L} 5.946;5.2049;4.9371;4.4653;4.2729;4.2314;4.1321;3.8982;3.8613;3.8069 -;-;-;-;-;-;-;-;-;- 992 NaN NaN 357034.7 NaN 14504 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18276 76.627 NaN 529030 35 0 31102 0.262 + 12405 KPGKGARAE 9 80 457.2642804947058 912.5140080562117 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18272 510737.1875 0.6793338337851532 13 -0.35680389404296875 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 6.2057823575117 0.30397260197431997 2 Q 1 9 11.594 0 0 1.2705 0 0 414.2468891910246 367.1966951959594 781.443584386984 0 0 0 0 0 0.7614393726401688 0 0 0 Q 1.2705 - 27 + NaN NaN 179027.3 NaN 14505 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18277 76.631 NaN 403130 35 0 25343 0.261 -1 0 73 465.7774943895481 929.5404358458962 2 465.7775573730469 MULTI HCD FTMS 0 0 0 18272 196732.9375 0.28924548439726183 13 -0.35680389404296875 5 NaN NaN 2 PVQ[RV]N 6 -1 9.0462 0 0 0.97319 0 0 218.11494643379064 0 218.11494643379064 0 2.0564531648135933 0 0 0 0 0 0 0.3807196863200844 PVQ[RV]N 0.97319 - 52 NaN NaN 147280.8 NaN 14506 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18278 76.634 NaN 276470 35 0 32434 0.261 + 21343 PSWAYSTLLF 10 75 592.8026566945545 1183.5907604559088 2 592.8024291992188 MULTI HCD FTMS 0 0 0 18272 112811.640625 0.055610229094322755 40 -0.9546279907226562 6 Unmodified _PSWAYSTLLF_ ENST00000409185.5_1_2:131806791-131806905:-|nuORF 19.256988751693697 0.33098864134661865 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 8 26.995 0 0 2.2808 0 0 792.3446912388539 0 792.3446912388539 0 5.708253071758875 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.2808 - 100 NaN NaN 130763.9 NaN 14507 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18279 76.637 NaN 476010 35 0 165360 0.261 + 30863 VQPPHLFLW 9 59 568.8164638148369 1135.6183746964737 2 568.8170166015625 MULTI HCD FTMS 0 0 0 18272 279189.65625 1 0 0 7 Unmodified _VQPPHLFLW_ ENSG00000174206|ENST00000398055|KICS2 44.40701690623563 0.04511410083598184 2 {M(Oxidation (M))|F}{I|L}W 3 6 35.177 0 0 3.0976 0 0 671.3753529279312 0 671.3753529279312 0 23.214562785677657 0 0 0 1.1989700043360187 0 0 0 + {M(Oxidation (M))|F}{I|L}W 3.0976 + + 40 NaN NaN 161528.1 NaN 14508 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18280 76.641 NaN 219660 35 0 25326 0.261 -1 YPIYDVLQM 9 61 579.28128363622 1156.54801433924 2 579.28173828125 MULTI HCD FTMS 0 0 0 18272 50910.27734375 0.5405492694161991 -6 0.17017364501953125 8 Oxidation (M) _YPIYDVLQM(Oxidation (M))_ ENSG00000144028|ENST00000323853|SNRNP200;ENST00000493271.1_1_2:96945134-96947649:-|nuORF;ENST00000497539.5_1_2:96940752-96950410:-|nuORF 29.081581746732265 0.1154664336125038 2 V{I|L}Q{M(Oxidation (M))|F} 4 -1 45.165 0 0 3.9052 0 0 651.2909413068375 0 651.2909413068375 0 35.70107520596089 0 0 0 1.6237125054200234 0 0 0 V{I|L}Q{M(Oxidation (M))|F} 3.9052 + + 142 NaN NaN 117817.5 NaN 14509 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18281 76.644 NaN 191200 35 0 17068 0.263 + 18233 MPDVDFNL 8 54 475.7179592982177 949.4213656632354 2 475.7181701660156 MULTI HCD FTMS 0 0 0 18272 48407.0703125 0.4059429539265831 -5 0.1407470703125 9 Unmodified _MPDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 D{M(Oxidation (M))|F}N{I|L} 4 4 36.542 0 0 3.8489 0 0 442.188280174025 0 442.188280174025 0 23.44335023848103 0 0 0 0.4247425010840047 0 0 0.4247425010840047 + D{M(Oxidation (M))|F}N{I|L} 3.8489 + + 30 NaN NaN 115029.4 NaN 14510 3769 18272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18283 76.649 NaN 1787200 35 0 130360 0.327 + 27147 SYMWTINNF 9 117 596.2605005992127 1190.5064482652253 2 596.2606811523438 MULTI HCD FTMS 0 0 0 18282 858320.5 0.859048274960443 1 -0.016204833984375 1 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 149.91393105778798 8.917243180786556E-06 2 {M(Oxidation (M))|F}C{M(Oxidation (M))|F}EGT{I|L}NN{M(Oxidation (M))|F} 10 4 + 80.786 0 0 6.7858 6.7858 87.337 0 0 0 7.415215343448622 5.012936175259355 5.012936175259355 5.012936175259355 0 2.4291746928241125 0 0.6237125054200234 2.0114393726401687 {M(Oxidation (M))|F}C{M(Oxidation (M))|F}EGT{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}EGT{I|L}NGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}EGT{I|L}GGN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[ET]|[MV]}G{I|L}NN{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]SWT{I|L}NN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}NGG{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E{I|L}NN{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{M(Oxidation (M))|F}{[ET]|[MV]}G{I|L}NGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}WT{I|L}GGN{M(Oxidation (M))|F} 6.7858;6.3648;6.0464;6.016;5.5554;5.551;5.2729;5.2515;5.1343;5.0164 -;-;+;-;-;-;-;-;-;- + 8282 + NaN NaN 358530.1 NaN 14511 3770 18282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18284 76.653 NaN 842960 35 0 134200 0.261 + 35512 YYFSKLIEF 9 78 605.313031533974 1208.611510134748 2 605.3135375976562 MULTI HCD FTMS 0 0 0 18282 391579.5 0.06075990790574956 11 -0.29445648193359375 2 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 80.6760300276096 0.005633624786464751 2 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 92.802 0 0 7.6784 7.6784 90.326 0 0 0 2.870156338638594 2.870156338638594 2.870156338638594 8.26606256887672 0 2.6237125054200234 2 0.2742275032520141 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}E{M(Oxidation (M))|F}{I|L};[KS]{M(Oxidation (M))|F}YY{I|L}{I|L}E{M(Oxidation (M))|F};[KS]{M(Oxidation (M))|F}YY{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[KS]{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{I|L}E{M(Oxidation (M))|F};[KS]{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{I|L}E{M(Oxidation (M))|F} 7.6784;6.9945;6.4161;4.7023;4.0184;3.4401;2.8174;2.1335;2.0555;1.8064 +;-;-;-;-;-;-;-;-;- + 340 NaN NaN 239698.8 NaN 14512 3770 18282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18285 76.657 NaN 461330 35 0 53017 0.262 -1 0 79 526.7731478192227 1051.5317427052453 2 526.7732543945312 MULTI HCD FTMS 0 0 0 18282 250031.6875 0.46747460970524907 -8 0.232391357421875 3 NaN NaN 2 {I|L}MDQVA{I|L} 7 -1 86.235 0 0 8.2009 0 0 0 278.1119478815063 278.1119478815063 70.6748730184978 0 0 0 0 2.190614065464281 1.6989700043360187 0.4247425010840047 0.2614393726401688 {I|L}MDQVA{I|L} 8.2009 - 263 + NaN NaN 162241 NaN 14513 3770 18282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18286 76.66 NaN 508880 35 0 66019 0.261 + 29275 TYLPQSYLI 9 68 549.2976446826813 1096.5807364321624 2 549.2978515625 MULTI HCD FTMS 0 0 0 18282 257785.640625 0.5685189035690787 -3 0.095306396484375 4 Unmodified _TYLPQSYLI_ ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B 55.50274090549119 0.023872834264864425 2 [YT]{I|L}PQSY{I|L}{I|L} 9 0 + 89.575 0 0 8.1686 8.1686 91.079 0 0 0 8.239087409443187 16.478174818886373 8.239087409443187 8.239087409443187 0 1.8494850021680094 1.5228787452803376 0.4247425010840047 0 + + [YT]{I|L}PQSY{I|L}{I|L};[Y{I|L}]TPQSY{I|L}{I|L};[YT]{I|L}P[AG]SY{I|L}{I|L};[Y{I|L}]TP[AG]SY{I|L}{I|L};[YT]{I|L}PQV[YT]{I|L};[Y{I|L}]TPQV[YT]{I|L};[YT]{I|L}P[AG]V[YT]{I|L};[Y{I|L}]TP[AG]V[YT]{I|L} 8.1686;7.4172;7.3289;6.5775;5.7979;5.0466;4.9582;4.2069 +;-;-;-;-;-;-;- + 293 NaN NaN 185646.4 NaN 14514 3770 18282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18288 76.665 NaN 6221200 35 0 696940 0.327 + 13558 KYPENFFLL 9 107 585.8131605635726 1169.6117681939452 2 585.8139038085938 MULTI HCD FTMS 0 0 0 18287 4457326 0.022657815775916856 46 -1.1357421875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 128.93241758739586 0.0006697181619526092 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 94.26 0 0 8.0591 8.0591 90.76 0 0 0 7.964627740862099 16.245776384474 7.964627740862099 7.964627740862099 0 2.555462187404089 0 0.3054621874040891 1.9487124477149549 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP]YKN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.0591;7.3781;7.2718;6.9565;6.6701;6.5908;6.3673;6.2755;6.1939;6.1776 +;-;-;-;-;-;-;-;-;- + 7136 NaN NaN 555304.9 NaN 14515 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18289 76.67 NaN 594100 35 0 96560 0.261 + 26664 SYADQMFLL 9 71 552.2575729466772 1102.5005929601543 2 552.2577514648438 MULTI HCD FTMS 0 0 0 18287 245556.765625 0.07551798300269434 -17 0.45680999755859375 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 76.82478488871298 0.006879825292024087 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 83.923 0 0 7.6121 7.6121 93.257 0 0 0 4.762036441594191 71.91630954681237 4.762036441594191 13.455612550363796 0 2.274227503252014 0 1.1861818737241734 0.4247425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[YV][C(Carbamidomethyl (C))D]{I|L}{I|L} 7.6121;6.3916;1.4208 +;-;- + 368 NaN NaN 179875.6 NaN 14516 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18290 76.673 NaN 547820 35 0 65812 0.261 + 17112 LYLGLFNRL 9 59 554.8292396668196 1107.643926400439 2 554.829345703125 MULTI HCD FTMS 0 0 0 18287 105880.9453125 0.06246301375893698 10 -0.27825164794921875 3 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 81.61307344734483 0.005330412723537057 2 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L} 10 2 + 92.701 0 0 8.3692 8.3692 89.495 0 0 0 83.23699398972998 9.131806016604358 9.131806016604358 3.521825181113627 0 2.5356668758921828 1.6989700043360187 0 0 {I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}GGR{I|L};{I|L}Y{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}GGR{I|L};{I|L}Y{I|L}G{M(Oxidation (M))|F}{I|L}NR{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}NR{I|L};[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}NR{I|L};[Y{I|L}]{I|L}{M(Oxidation (M))|F}G{I|L}NR{I|L} 8.3692;8.0512;7.3944;7.0765;6.6906;6.0802;4.3639 -;+;-;-;+;-;- + 337 + NaN NaN 162933.6 NaN 14517 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18291 76.676 NaN 284860 35 0 54681 0.261 + 10577 IPLEEGELEL 10 60 571.3032374431773 1140.5919219531545 2 571.3029174804688 MULTI HCD FTMS 0 0 0 18287 93372.78125 0.057752828873451345 10 -0.27825164794921875 4 Unmodified _IPLEEGELEL_ ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 22.736283301280096 0.29844449404982915 2 {I|L}E{I|L} 3 7 35.005 0 0 3.069 0 0 767.3698687193498 0 767.3698687193498 0 24.458865705675876 0 0 0 0.8807196863200843 0 0 0 + {I|L}E{I|L} 3.069 + + 89 NaN NaN 128470.8 NaN 14518 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18292 76.68 NaN 188270 35 0 16850 0.261 + 10795 ISRITTRQ 8 66 487.79076118320455 973.5669694332091 2 487.7908630371094 MULTI HCD FTMS 0 0 0 18287 64319.87109375 0.3998034379349586 -7 0.18979644775390625 5 Unmodified _ISRITTRQ_ ENST00000314940.6_1_5:137089244-137089340:-|nuORF 2.302733041254933 0.5385759549224092 2 [DP]Q 3 7 7.4473 0 0 0.76495 0 0 0 630.4061472498685 630.4061472498685 4.9730248405664685 0 0 0 0 0 0 0 0 [DP]Q 0.76495 - 14 NaN NaN 126356.8 NaN 14519 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18293 76.683 NaN 99098 35 0 6521.2 0.261 + 1228 AYLLYSLHL 9 46 546.808255708793 NaN 0 546.807861328125 PEAK HCD FTMS 0 0 0 18287 23249.33984375 0.09570333529161981 16 -0.43816375732421875 6 Unmodified _AYLLYSLHL_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 42.09456458481378 0.07155800144855468 2 C{I|L}{I|L}Y 4 6 37.423 0 0 3.4282 0 0 131.08884920879842 465.24656091861567 596.3354101274141 0 0 0 0 0 1.8494850021680094 0 0 0 C{I|L}{I|L}Y 3.4282 - 41 + NaN NaN 109030.9 NaN 14520 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18294 76.686 NaN 159980 35 0 9846.5 0.261 + 15589 LPDVSLQEF 9 61 524.2713132703586 1046.5280736075172 2 524.2698974609375 MULTI HCD FTMS 0 0 0 18287 29636.94921875 0.046117973905027886 12 -0.33034515380859375 7 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 24.990960013464015 0.14443998892849796 2 QE{M(Oxidation (M))|F} 3 6 35.534 0 0 3.3954 0 0 624.3489487069297 0 624.3489487069297 0 15.52378753635658 0 0 0 1.1861818737241734 0 0.5 0 + QE{M(Oxidation (M))|F} 3.3954 + + 155 + NaN NaN 132018 NaN 14521 3771 18287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18296 76.691 NaN 368350 35 0 28022 0.327 + 25887 SMTRYFYLF 9 67 614.2956938928323 1226.5768348524646 2 614.2969970703125 MULTI HCD FTMS 0 0 0 18295 128644.1875 0.1079891783490592 11 -0.3042144775390625 1 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 32.78568957990786 0.09846250359632436 2 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 7 + 66.449 0 0 5.4174 5.4174 91.406 0 0 0 25.431052042036768 44.23061874357607 25.431052042036768 32.55780949711784 0 0.4247425010840047 1.5228787452803376 0.805462187404089 0.3054621874040891 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[{M(Oxidation (M))|F}T][Y{M(Oxidation (M))|F}]Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]EEV[{M(Oxidation (M))|F}V]AEE 5.4174;2.7631;1.2143 -;-;- 183 NaN NaN 150646.6 NaN 14522 3772 18295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18297 76.696 NaN 534320 35 0 136730 0.261 + -1 IYNDMGSNHF 10 89 607.2513847858656 1212.4882166385312 2 607.2517700195312 MULTI HCD FTMS 0 0 0 18295 73454.34375 0.8545021162708881 3 -0.0816497802734375 2 Oxidation (M) _IYNDM(Oxidation (M))GSNHF_ REV__DNAJB7|p.D177H|1|0.22|ENSG00000172404|chr22:40861466-40861466|C/G|missense_variant 6.2057823575117 0.44245551207394906 2 [Y{I|L}]N 3 -1 22.932 0 0 1.8913 0 0 0 819.2741412813624 819.2741412813624 16.020599913279625 0 0 0 0 0 2 0 0 [Y{I|L}]N 1.8913 + + 306 NaN NaN 181821.1 NaN 14523 3772 18295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18299 76.701 NaN 409140 35 0 35414 0.327 + 15202 LNHLVPDIAW 10 70 589.3202632053724 1176.6259734775447 2 589.3193359375 MULTI HCD FTMS 0 0 0 18298 147152.203125 0.05800290803464237 17 -0.48036956787109375 1 Unmodified _LNHLVPDIAW_ REV__ENSG00000179002|ENST00000375371|TAS1R2 21.536976647645854 0.3096624038397699 2 {I|L}AW 3 -1 38.188 0 0 3.2455 0 0 788.41606337715 0 788.41606337715 0 1.4928876664371415 0 0 0 1.3494850021680094 0 0 0 {I|L}AW 3.2455 + + 235 NaN NaN 145077.5 NaN 14524 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18300 76.705 NaN 727720 35 0 40549 0.261 + 25888 SMTRYFYLF 9 82 614.2956938928323 1226.5768348524646 2 614.7929077148438 MULTI HCD FTMS 0 0 0 18298 128960.296875 0.15251405239140117 12 -0.34026336669921875 2 Unmodified _SMTRYFYLF_ ENSG00000196954|ENST00000444739|CASP4;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 32.78568957990786 0.09846250359632436 2 [YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F} 10 8 + 72.259 0 0 5.8912 5.8912 83.977 0 0 0 31.760912590556813 45.7889460687926 31.760912590556813 0.5115252244738144 0 0.4247425010840047 1.5228787452803376 0.805462187404089 1.0114393726401687 [YN]AWV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWVY[{I|L}V]{[CP]|[EA]};[Y{I|L}]EEV{NN|[MP]|[D{I|L}]|[EV]}S{I|L}{M(Oxidation (M))|F};Q{[CP]|[EA]}[HK]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]EEV[{M(Oxidation (M))|F}V]AEE;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[RV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S{I|L}{M(Oxidation (M))|F};[NP][PG]{NN|[MP]|[D{I|L}]|[EV]}VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[NP][QA][HT]HY{I|L}{M(Oxidation (M))|F};[NP][QA][HT]H{I|L}Y{M(Oxidation (M))|F} 5.8912;5.8494;3.4614;3.047;2.1444;1.497;1.3374;1.2918;0.47397;0.084981 -;-;-;-;-;-;-;-;-;- 501 NaN NaN 205205.5 NaN 14525 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18301 76.708 NaN 445260 35 0 43245 0.261 + 11359 IYNGKLFDLL 10 95 598.3397450461429 1194.6649371590856 2 598.33984375 MULTI HCD FTMS 0 0 0 18298 117596.8828125 0.013386169445224187 28 -0.6414260864257812 3 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 59.368380827593164 0.04371880213842136 2 [Y{I|L}]N[KG]{I|L}{M(Oxidation (M))|F}D{I|L}{I|L} 10 0 + 67.259 0 0 5.63 5.63 87.245 0 0 0 14.736038353352882 9.7475560753103 9.7475560753103 9.164539485499262 0 1.25 2 0.7134679910804405 0 + + [Y{I|L}]N[KG]{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]GG[KG]{I|L}{M(Oxidation (M))|F}D{I|L}{I|L};[Y{I|L}]N[KG]{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]GG[KG]{I|L}EV{M(Oxidation (M))|F}{I|L};[Y{I|L}]N[KG]{I|L}E{I|L}[{M(Oxidation (M))|F}V];[Y{I|L}]GG[KG]{I|L}E{I|L}[{M(Oxidation (M))|F}V] 5.63;4.8628;4.0653;3.2982;2.8962;2.129 +;-;-;-;-;- + 1217 NaN NaN 156005.6 NaN 14526 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18302 76.712 NaN 291480 35 0 33303 0.261 -1 LYMPKLLYF 9 70 602.3271995386184 1202.6398461440367 2 602.3131103515625 MULTI HCD FTMS 0 0 0 18298 15748.6123046875 0.44714290213994257 -7 0.17330169677734375 4 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 11.640296217721598 0.25978676193971967 2 N{I|L}{[VA]|[{I|L}G]}VVY{M(Oxidation (M))|F} 8 -1 25.01 0 0 2.0796 0 0 279.1223316876969 0 279.1223316876969 0 16.515318870489466 0 0 0 0.5 0 0 0 N{I|L}{[VA]|[{I|L}G]}VVY{M(Oxidation (M))|F} 2.0796 - 396 NaN NaN 142904.2 NaN 14527 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18303 76.715 NaN 246940 35 0 47462 0.261 + -1 MEKQSAKRLF 10 50 627.3377679818002 1252.6609830304003 2 627.3372802734375 MULTI HCD FTMS 0 0 0 18298 128204.234375 1 0 0 5 Oxidation (M) _M(Oxidation (M))EKQSAKRLF_ REV__ENST00000419693.1_3_7:2347403-2347532:-|nuORF 3.5964929083625545 0.45626689593999237 2 {I|L}W 2 -1 8.5835 0 0 0.68522 0 0 183.090041855709 767.3837984674436 950.4738403231527 0 0 0 0 0 0 0 0 0 {I|L}W 0.68522 - 15 + NaN NaN 125638.1 NaN 14528 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18304 76.718 NaN 218730 35 0 41653 0.262 + 23521 RNKMREAL 8 54 509.28442933899476 1016.5543057447895 2 509.2840881347656 MULTI HCD FTMS 0 0 0 18298 60765.22265625 0.0331028685132078 21 -0.5487823486328125 6 Unmodified _RNKMREAL_ REV__ENSG00000166578|ENST00000416617|IQCD;REV__nc|ENSG00000166578|Q96DY2-2|IQCD;REV__nc|ENSG00000166578|Q96DY2-3|IQCD 13.50788311687929 0.4944073034352369 2 [YV]V[DV]G[PG]V{I|L} 10 -1 + 18.918 0 0 1.861 1.861 81.281 0 0 0 0.45249045952196454 1.7512841890908213 0.45249045952196454 3.5218251811136234 0 0 0 0.3054621874040891 0 [YV]V[DV]G[PG]V{I|L};[YV]V[DV][NP]V{I|L} 1.861;1.5146 -;- 142 NaN NaN 121648.7 NaN 14529 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18305 76.722 NaN 302700 35 0 45978 0.261 + -1 YRAIDGQCIMC 11 57 644.777470383357 1287.540387833514 2 645.2789916992188 MULTI HCD FTMS 0 0 0 18298 30360.921875 0.3714257587747971 -4 0.0847320556640625 7 Oxidation (M) _YRAIDGQCIM(Oxidation (M))C_ REV__ENSG00000070366|ENST00000263073|SMG6 7.608950283845883 0.38555039536024605 2 Q[QP]WV{M(Oxidation (M))|F} 6 -1 49.046 0 0 3.8093 0 0 484.1446753209425 0 484.1446753209425 0 45.066504924811625 0 0 0 1.7134679910804405 0 0 0.3494850021680094 Q[QP]WV{M(Oxidation (M))|F} 3.8093 - 27 NaN NaN 139078.7 NaN 14530 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18306 76.725 NaN 78230 35 0 16689 0.263 + -1 YEQVIMVC 8 34 500.72775196137053 999.4409509895411 2 500.7278137207031 MULTI HCD FTMS 0 0 0 18298 28658.3984375 0.5013422678911822 -1 0.009552001953125 8 Oxidation (M) _YEQVIM(Oxidation (M))VC_ REV__ENST00000521885.5_1_8:82627332-82644598:-|nuORF;REV__ENST00000521895.5_1_8:82627332-82633516:-|nuORF 7.910154910731844 0.5302565402355366 2 [W{M(Oxidation (M))|F}]W{I|L} 4 -1 18.416 0 0 1.8427 0 0 0 364.10089906987236 364.10089906987236 18.037771509356908 0 0 0 0 1 0 0 0 [W{M(Oxidation (M))|F}]W{I|L} 1.8427 - 9 NaN NaN 99349.5 NaN 14531 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18307 76.728 NaN 124650 35 0 7180.1 0.261 + 15590 LPDVSLQEF 9 53 524.2713132703586 1046.5280736075172 2 524.2724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _LPDVSLQEF_ ENSG00000103035|ENST00000219313|PSMD7 21.536976647645854 0.1742816388551942 2 QE{M(Oxidation (M))|F} 3 6 33.901 0 0 3.2394 0 0 624.3467514413047 0 624.3467514413047 0 22.68614309909985 0 0 0 1.274227503252014 0 0.4247425010840047 0 + QE{M(Oxidation (M))|F} 3.2394 + + 58 + NaN NaN 117584 NaN 14532 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18308 76.732 NaN 93781 35 0 9239.1 0.261 + 19500 NRDQTESTI 9 41 532.2545364906458 NaN 0 532.2715454101562 PEAK HCD FTMS 0 0 0 18298 8033.93408203125 0.8916554560533844 -1 0.009552001953125 10 Unmodified _NRDQTESTI_ REV__ENSG00000041515|ENST00000457511|MYO16;REV__nc|ENSG00000041515|Q9Y6X6|MYO16 2.9952420565917617 0.2807323172627736 2 {I|L} 1 -1 4.6041 0 0 0.43333 0 0 335.1468770810978 611.2457979791624 946.3926750602602 0 0 0 0 0 0 0 0 0 {I|L} 0.43333 + + 8 + NaN NaN 122541.9 NaN 14533 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18309 76.735 NaN 75012 35 0 6774.1 0.263 + 4894 FAGSSFGF 8 45 410.1878777414424 NaN 0 410.49188232421875 PEAK HCD FTMS 0 0 0 18298 8018.03271484375 1 0 0 11 Unmodified _FAGSSFGF_ REV__ENSG00000121058|ENST00000240316|COIL 2.8892196856762586 0.38822285293237185 2 G 1 -1 3.0989 0 0 0.37868 0 0 596.2607977418708 162.05608545474846 758.3168831966192 0 0 0 0 0 0 0 0 0 G 0.37868 + + 5 + NaN NaN 112664.3 NaN 14534 3773 18298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18311 76.74 NaN 2765300 35 0 256120 0.327 + 27032 SYLSSILRF 9 100 543.302988912616 1084.591424892032 2 543.3031616210938 MULTI HCD FTMS 0 0 0 18310 1749916.5 1 0 0 1 Unmodified _SYLSSILRF_ ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF;nc|ENSG00000175115|Q6VY07-2|PACS1 142.0795815696625 1.719916958814042E-05 2 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 8 2 98.155 0 0 9.0499 0 0 193.07418127699117 0 193.07418127699117 0 70.50139277215216 0 0 0 2.6237125054200234 0 1.360924374808178 0.3807196863200844 G{I|L}SS{I|L}{I|L}R{M(Oxidation (M))|F} 9.0499 - 1688 + NaN NaN 512749.2 NaN 14535 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18312 76.744 NaN 262590 35 0 12192 0.261 + 8118 GLLSAGRGGVA 11 72 479.277491538702 956.540430144204 2 479.2774353027344 MULTI HCD FTMS 0 0 0 18310 173724.78125 0.668230344309388 1 -0.03285980224609375 2 Unmodified _GLLSAGRGGVA_ ENST00000265393.10_1_7:27779738-27779792:+|nuORF 5.296884461304476 0.39569033063702824 2 Q 1 11 8.2268 0 0 0.86006 0 0 458.2626637720391 367.1967867486938 825.4594505207328 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.86006 - 43 + NaN NaN 131779.6 NaN 14536 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18313 76.748 NaN 250160 35 0 35583 0.261 -1 GRLMCLCFLL 10 65 592.8026566945545 1183.5907604559088 2 592.803955078125 MULTI HCD FTMS 0 0 0 18310 77027.4453125 0.037970495390785765 45 -1.1198272705078125 3 Oxidation (M) _GRLM(Oxidation (M))CLCFLL_ ENST00000418458.5_1_3:52720022-52720109:+|nuORF 14.838274106304384 0.3723198072575719 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 23.43 0 0 1.9796 0 0 792.3423329084 0 792.3423329084 0 2.460762528683702 0 0 0 0.3252574989159953 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 1.9796 + + 13 NaN NaN 135208.9 NaN 14537 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18314 76.751 NaN 158510 35 0 31448 0.261 -1 IMALAFPDQ 9 46 511.25347395230807 NaN 0 511.26373291015625 PEAK HCD FTMS 0 0 0 18310 18557.69921875 0.456664918484603 9 -0.25542449951171875 4 Oxidation (M) _IM(Oxidation (M))ALAFPDQ_ ENSG00000175274|ENST00000525680|TP53I11 12.240655878213236 0.2359303321180293 2 EA{I|L} 3 -1 16.198 0 0 1.5873 0 0 131.07971150897066 573.2318209283811 704.3115324373518 0 0 0 0 0 0 0 0 0 EA{I|L} 1.5873 - 19 + NaN NaN 114398.7 NaN 14538 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18315 76.755 NaN 246960 35 0 24164 0.261 + 218 AEVLGLILRY 10 66 573.8478079398934 1145.6810629465867 2 573.8479614257812 MULTI HCD FTMS 0 0 0 18310 60425.23046875 0.8338421385364608 1 -0.03285980224609375 5 Unmodified _AEVLGLILRY_ ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC 20.41453444215458 0.3201613495159799 2 {I|L}RY 3 7 35.93 0 0 3.1361 0 0 695.419237205275 0 695.419237205275 0 7.513487579716767 0 0 0 1.274227503252014 0 0 0 + {I|L}RY 3.1361 + + 218 NaN NaN 123020.8 NaN 14539 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18316 76.758 NaN 206860 35 0 51480 0.261 + 8847 HLPPCHEAL 9 58 508.75143140731046 NaN 0 508.7605895996094 PEAK HCD FTMS 0 0 0 18310 7062.17333984375 0.7430407348388071 -1 0.03923797607421875 6 Unmodified _HLPPCHEAL_ REV__ENSG00000130598|ENST00000381911|TNNI2;REV__ENST00000468473.1_1_11:1861614-1861937:+|nuORF;REV__nc|ENSG00000130598|P48788-2|TNNI2 11.640296217721598 0.23883959125015683 2 AE 2 -1 12.831 0 0 1.2635 0 0 131.0969657425522 681.2923642789251 812.3893300214772 0 0 0 0 0 0.4247425010840047 0 0 0 AE 1.2635 - 14 + NaN NaN 126256.5 NaN 14540 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18317 76.761 NaN 141280 35 0 23574 0.261 -1 0 46 632.3418330849709 1894.0036698551125 3 632.0084838867188 MULTI HCD FTMS 0 0 0 18310 61631.87890625 1 0 0 7 NaN NaN 2 {I|L}Y 2 -1 10.969 0 0 0.57915 0 0 166.04542534016565 1448.7840797338333 1614.829505073999 0 0 0 0 0 0 0 0 0 {I|L}Y 0.57915 - 5 + NaN NaN 115053.6 NaN 14541 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18318 76.765 NaN 192350 35 0 22003 0.261 + 26825 SYIEHIFEI 9 67 575.7927228870228 1149.5708928408455 2 575.7936401367188 MULTI HCD FTMS 0 0 0 18310 47515.453125 0.24193325497987714 21 -0.5188522338867188 8 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 49.93300154707207 0.03166451819912738 2 {M(Oxidation (M))|F}E{I|L} 3 6 37.065 0 0 3.2242 0 0 742.3646107404312 0 742.3646107404312 0 7.622796860033674 0 0 0 0.7059771852360797 0 0.3807196863200844 0 + {M(Oxidation (M))|F}E{I|L} 3.2242 + + 288 NaN NaN 110953.7 NaN 14542 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18319 76.768 NaN 119930 35 0 11773 0.262 + 28731 TSTISEVKA 9 45 468.25544832525384 934.4963437173077 2 468.25579833984375 MULTI HCD FTMS 0 0 0 18310 30820.712890625 0.24641572835233155 12 -0.3271636962890625 9 Unmodified _TSTISEVKA_ ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF 1.844237919475145 0.33703635659052655 2 P 1 9 2.4743 0 0 0.26477 0 0 445.2492256526577 389.1804293268188 834.4296549794765 0 0 0 0 0 0 0 0 0 P 0.26477 - 14 + NaN NaN 109068.3 NaN 14543 3774 18310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18321 76.773 NaN 3507800 35 0 591760 0.327 + 5984 FPDQVAIQL 9 73 515.7819895057114 1029.5494260782227 2 515.7822875976562 MULTI HCD FTMS 0 0 0 18320 2692681 0.7291967121328958 -3 0.0816497802734375 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 96.36657018975838 0.004359138328518304 2 QVA{I|L}Q{I|L} 6 3 75.24 0 0 7.3081 0 0 359.1480885236344 0 359.1480885236344 0 60.062893943202624 0 0 0 2.3494850021680094 0 0 1.3609243748081783 + QVA{I|L}Q{I|L} 7.3081 + + 436 NaN NaN 568853.5 NaN 14544 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18322 76.777 NaN 1612900 35 0 289470 0.261 + 28530 TPQFPDMIL 9 80 539.26788511357 1076.5212172939398 2 539.268310546875 MULTI HCD FTMS 0 0 0 18320 1025070.5 0.05262307202324825 37 -0.8837661743164062 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 47.594388314883695 0.03493607795751234 2 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 66.833 0 0 6.2082 6.2082 93.882 0 0 0 5.6424927368725974 48.873949984654246 5.6424927368725974 66.832750158095 0 1.7614393726401687 0 0.7614393726401688 0 [QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 6.2082 - 421 NaN NaN 331887.8 NaN 14545 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18323 76.781 NaN 1153800 35 0 105380 0.261 + 7383 FVHDLVLYL 9 98 559.8157438339699 1117.6169347347397 2 559.8159790039062 MULTI HCD FTMS 0 0 0 18320 274505.8125 0.281723823362903 8 -0.222564697265625 3 Unmodified _FVHDLVLYL_ CLTC-VMP1|12|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;ENSG00000070371|ENST00000427926|CLTCL1;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC 28.486842064014134 0.11819662193267319 2 [YT]Y{I|L}AV{I|L}Y 8 6 56.538 0 0 5.0588 0 0 0 128.07126533374108 128.07126533374108 21.924012187939027 0 0 0 0 1.274227503252014 1.3010299956639813 0.8882104921644451 0 [YT]Y{I|L}AV{I|L}Y 5.0588 - 1233 NaN NaN 263851 NaN 14546 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18324 76.784 NaN 503190 35 0 28164 0.262 + 12406 KPGKGARAE 9 88 457.2642804947058 912.5140080562117 2 457.2643127441406 MULTI HCD FTMS 0 0 0 18320 489633.03125 0.6512631004902266 19 -0.4766845703125 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 6.2057823575117 0.30397260197431997 2 Q 1 9 11.867 0 0 1.3004 0 0 414.24721269982865 367.1969393997627 781.4441520995913 0 0 0 0 0 0.7887254899964358 0 0 0 Q 1.3004 - 32 + NaN NaN 163905.7 NaN 14547 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18325 76.788 NaN 253370 35 0 17579 0.261 + 23897 RSSKRSLP 8 67 465.7774943895481 929.5404358458962 2 465.7774658203125 MULTI HCD FTMS 0 0 0 18320 163961.078125 0.24106284421520885 19 -0.4766845703125 5 Unmodified _RSSKRSLP_ REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF 4.75600775471527 0.5349361699807423 2 Q 1 -1 3.0989 0 0 0.33338 0 0 431.2721690996056 367.1962984674438 798.4684675670494 0 0 0 0 0 0 0 0 0 Q 0.33338 - 28 + NaN NaN 127662.2 NaN 14548 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18326 76.791 NaN 837700 35 0 261800 0.261 + 35513 YYFSKLIEF 9 69 605.313031533974 1208.611510134748 2 606.2999877929688 MULTI HCD FTMS 0 0 0 18320 48234.015625 0.02375035283423912 16 -0.437530517578125 6 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 31.26834338654808 0.10542797264966089 2 YY{M(Oxidation (M))|F}{I|L}{I|L}[KS]E{M(Oxidation (M))|F} 9 4 + 50.84 0 0 4.2065 4.2065 89.342 0 0 0 26.147219115861454 2.079175194338923 2.079175194338923 27.204422590040597 0 1.579689690656103 2 0.6203715150305281 0 YY{M(Oxidation (M))|F}{I|L}{I|L}[KS]E{M(Oxidation (M))|F};[Y{I|L}][KA]{I|L}YYE{M(Oxidation (M))|F};[Y{I|L}]{[QS]|[NT]}[TP]{I|L}{I|L}Q{M(Oxidation (M))|F};{[ET]|[MV]}{NN|[MP]|[D{I|L}]|[EV]}[KC]{I|L}{I|L}Q{M(Oxidation (M))|F} 4.2065;1.9556;1.1981;0.075719 -;-;-;- 238 + NaN NaN 236393.7 NaN 14549 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18327 76.794 NaN 177320 35 0 14153 0.261 -1 STCRPHRACV 10 64 622.2934226153319 1242.5722922974637 2 622.2930908203125 MULTI HCD FTMS 0 0 0 18320 56222.5234375 0.5043538953081766 1 -0.029541015625 7 2 Carbamidomethyl (C) _STC(Carbamidomethyl (C))RPHRAC(Carbamidomethyl (C))V_ ENST00000411702.7_1_17:78355638-78356025:+|nuORF 10.073929032068715 0.4168838835836452 2 [Y{I|L}]Y[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F} 9 -1 + 37.596 0 0 3.0257 3.0257 85.56 0 0 0 11.678761844422219 4.39651225317683 4.39651225317683 9.457640437841878 0 1.5994850021680094 2 0.5 0 [Y{I|L}]Y[W{I|L}]{[DS]|[MA]|[CV]|TT}H{M(Oxidation (M))|F};[Y{I|L}]V{[WT]|[RM]}{[YD]|[{M(Oxidation (M))|F}M]}H{M(Oxidation (M))|F};[Y{I|L}][DC]{[DS]|[MA]|[CV]|TT}R{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.0257;2.2646;1.8833 -;-;- 145 + NaN NaN 131181.9 NaN 14550 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18328 76.798 NaN 315650 35 0 23060 0.261 + -1 YSARCNAHF 9 60 563.2490478537982 1124.4835427743963 2 563.2496948242188 MULTI HCD FTMS 0 0 0 18320 78047.2421875 0.19023041727026616 -17 0.47060394287109375 8 Carbamidomethyl (C) _YSARC(Carbamidomethyl (C))NAHF_ REV__ENSG00000168546|ENST00000524240|GFRA2;REV__ENST00000306793.4_1_8:21550792-21640469:-|nuORF;REV__nc|ENSG00000168546|O00451-2|GFRA2;REV__nc|ENSG00000168546|O00451-3|GFRA2 10.823927491677226 0.26684000660059787 2 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 33.817 0 0 3.0073 0 0 250.09485060859532 0 250.09485060859532 0 28.33236339446657 0 0 0 1.6237125054200234 0 0 0 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 3.0073 - 99 NaN NaN 139887.5 NaN 14551 3775 18320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18330 76.802 NaN 641280 35 0 49640 0.327 + 27148 SYMWTINNF 9 86 596.2605005992127 1190.5064482652253 2 596.260498046875 MULTI HCD FTMS 0 0 0 18329 330001.59375 0.3302814040269741 7 -0.193023681640625 1 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 118.0683919894846 0.0016252157255221692 2 WWT{I|L}NN{M(Oxidation (M))|F} 7 3 71.26 0 0 5.9857 0 0 211.0595417707047 0 211.0595417707047 0 49.57789158229879 0 0 0 2.242992819099939 0 1.1747425010840047 0.7742275032520141 WWT{I|L}NN{M(Oxidation (M))|F} 5.9857 - 2220 NaN NaN 182912.1 NaN 14552 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18331 76.807 NaN 528150 35 0 67047 0.261 + 29276 TYLPQSYLI 9 64 549.2976446826813 1096.5807364321624 2 549.2977294921875 MULTI HCD FTMS 0 0 0 18329 291478.25 0.6428243819262724 3 -0.0851898193359375 2 Unmodified _TYLPQSYLI_ ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B 70.33199760932243 0.0089807860198535 2 [YT]{I|L}[QP]SY{I|L}{I|L} 9 0 + 83.592 0 0 7.623 7.623 92.971 0 0 0 12.28347485907939 16.478174818886373 12.28347485907939 12.28347485907939 0 2.1747425010840047 1.5228787452803376 0.7742275032520141 0 + + [YT]{I|L}[QP]SY{I|L}{I|L};[Y{I|L}]T[QP]SY{I|L}{I|L};[YT]{I|L}[QP]V[YT]{I|L};[Y{I|L}]T[QP]V[YT]{I|L};[YT]{I|L}[QP]V{I|L}[YT];[Y{I|L}]T[QP]V{I|L}[YT] 7.623;6.5028;4.9337;3.8135;3.7228;2.6026 +;-;-;-;-;- + 201 NaN NaN 163563 NaN 14553 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18332 76.81 NaN 557400 35 0 56739 0.261 -1 0 84 526.7731478192227 1051.5317427052453 2 526.773193359375 MULTI HCD FTMS 0 0 0 18329 198513.125 0.37115233896401356 -2 0.06240081787109375 3 NaN NaN 2 {I|L}MDQVA{I|L} 7 -1 87.138 0 0 8.2868 0 0 0 278.111901050226 278.111901050226 70.57139130560225 0 0 0 0 2.1872730750747857 1.5228787452803376 0.4247425010840047 0.2302046884880938 {I|L}MDQVA{I|L} 8.2868 - 429 + NaN NaN 173192.9 NaN 14554 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18333 76.814 NaN 460440 35 0 68503 0.261 + 35514 YYFSKLIEF 9 76 605.313031533974 1208.611510134748 2 605.31298828125 MULTI HCD FTMS 0 0 0 18329 137878.859375 0.021394140392371905 17 -0.43133544921875 4 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 71.70789743142352 0.008535567138151097 2 YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F} 9 0 + 92.686 0 0 7.6688 7.6688 93.581 0 0 0 6.332946754800375 6.332946754800375 6.332946754800375 14.599009323677095 0 2.9604093769761874 2 1.1989700043360187 0 + + YY{M(Oxidation (M))|F}SK{I|L}{I|L}E{M(Oxidation (M))|F};YY{M(Oxidation (M))|F}SK{I|L}E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[QC]|[C(Carbamidomethyl (C))A]}SK{I|L}E{I|L}{M(Oxidation (M))|F} 7.6688;6.4609;4.0654;3.3815 +;-;-;- + 242 + NaN NaN 163828.6 NaN 14555 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18334 76.817 NaN 601770 35 0 81631 0.261 + 15822 LPIDVTEGEVI 11 57 592.8239777660381 1183.633402598876 2 592.8237915039062 MULTI HCD FTMS 0 0 0 18329 210913.75 0.1861669497090724 -5 0.13732147216796875 5 Unmodified _LPIDVTEGEVI_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 34.93206674587334 0.1695891461859059 2 TEWV{I|L} 5 7 53.756 0 0 4.5416 0 0 537.3160265041055 0 537.3160265041055 0 49.776296993281406 0 0 0 1.8807196863200843 0 0 0 TEWV{I|L} 4.5416 - 66 NaN NaN 182381.5 NaN 14556 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18335 76.82 NaN 636180 35 0 64260 0.262 + 8339 GYIDNVTLI 9 77 504.27407888116227 1006.5336048291246 2 504.27410888671875 MULTI HCD FTMS 0 0 0 18329 231067.390625 0.6256088325230514 -2 0.06240081787109375 6 Unmodified _GYIDNVTLI_ ENSG00000058085|ENST00000264144|LAMC2;LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2 137.42381684818497 0.00015474832393368816 2 [YG]{I|L}DNVT{I|L}{I|L} 9 0 + 103.23 0 0 10.256 10.256 97.607 0 0 0 18.881580146315784 73.53585325153396 18.881580146315784 24.76280941356464 0 2.610924374808178 1.5228787452803376 0.7742275032520141 1.555462187404089 + + [YG]{I|L}DNVT{I|L}{I|L};[YG]{I|L}DGGVT{I|L}{I|L};[{I|L}T]Y{[QG]|[NA]}{[CP]|[EA]}{I|L}{I|L};[YG]{I|L}[QT]{[CP]|[EA]}{I|L}{I|L};[YG]{[SA]|[TG]}[PS]VT{I|L}{I|L};[{I|L}T]Y[VS]T[NP]{I|L};[{I|L}T]Y[VS]T[{I|L}P]N 10.256;7.7956;4.9055;4.7926;4.3632;3.0497;1.555 +;-;-;-;-;-;- + 463 NaN NaN 192031.3 NaN 14557 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18336 76.824 NaN 236800 35 0 50831 0.261 + 30864 VQPPHLFLW 9 56 568.8164638148369 1135.6183746964737 2 568.8165283203125 MULTI HCD FTMS 0 0 0 18329 75058.078125 0.26884261807245946 7 -0.193023681640625 7 Unmodified _VQPPHLFLW_ ENSG00000174206|ENST00000398055|KICS2 21.74664581756881 0.17247014374749275 2 {I|L}W 2 7 18.5 0 0 1.6291 0 0 818.4465199201187 0 818.4465199201187 0 -0.7082530717588789 -0.7082530717588789 0 0 0.3807196863200844 0 0 0 + {I|L}W 1.6291 + + 32 NaN NaN 132031.1 NaN 14558 3776 18329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18338 76.829 NaN 5536400 35 0 616090 0.327 + 13559 KYPENFFLL 9 111 585.8131605635726 1169.6117681939452 2 585.8139038085938 MULTI HCD FTMS 0 0 0 18337 4192637.5 0.0213123312250889 52 -1.3332672119140625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 125.52916310638031 0.0008761121089336018 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 97.857 0 0 8.3666 8.3666 91.404 0 0 0 8.310384486277798 16.478174818886387 8.310384486277798 8.310384486277798 0 2.579689690656103 0 0.5138793319624578 2.0088643834802156 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 8.3666;7.6561;7.5793;7.3987;7.3539;7.0574;6.8688;6.6434;6.6196;6.5666 +;-;-;-;-;-;-;-;-;- + 14125 NaN NaN 669697.9 NaN 14559 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18339 76.833 NaN 2472000 35 0 370470 0.261 + 26665 SYADQMFLL 9 92 552.2575729466772 1102.5005929601543 2 552.2577514648438 MULTI HCD FTMS 0 0 0 18337 1459268.375 0.448780159076993 -11 0.30112457275390625 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 129.77232118876745 0.0006187813247758304 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 92.488 0 0 8.389 8.389 93.812 0 0 0 4.762036441594191 52.68324026756829 4.762036441594191 11.121506059964545 0 2.274227503252014 0 1.4916440611282626 0.6747425010840047 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AQD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}E{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]VYQDCS{I|L};[Y{I|L}]VYQDA[MT];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}QDAYS;[Y{I|L}]VYQDC{I|L}S;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}ENAYS 8.389;7.3802;6.9417;6.8647;5.933;3.6409;2.4244;2.3722;2.3047;2.2932 +;-;-;-;-;-;-;-;-;- + 3403 NaN NaN 480761.3 NaN 14560 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18340 76.837 NaN 422000 35 0 35133 0.261 + 18223 MPDPWAEFHL 10 89 629.7818681235054 1257.5491833138108 2 629.7818603515625 MULTI HCD FTMS 0 0 0 18337 110270.5625 0.44152156395613634 -15 0.41210174560546875 3 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 96.11092074494114 0.0005333825011732249 2 {M(Oxidation (M))|F}PDPWAE{M(Oxidation (M))|F}H{I|L} 10 0 + 68.529 0 0 5.4494 5.4494 89.632 0 0 0 47.55957525565542 9.131806016604358 9.131806016604358 14.137564326065714 0 2.774227503252014 0 0.5994850021680094 0 + + {M(Oxidation (M))|F}PDPWAE{M(Oxidation (M))|F}H{I|L};{M(Oxidation (M))|F}PDPWAE{I|L}{[{M(Oxidation (M))|F}H]|[RQ]};[Y{I|L}]N[YC(Carbamidomethyl (C))]E{M(Oxidation (M))|F}H{I|L};[YN]{I|L}[YC(Carbamidomethyl (C))]E{M(Oxidation (M))|F}H{I|L};[Y{I|L}]GG[YC(Carbamidomethyl (C))]E{M(Oxidation (M))|F}H{I|L};[Y{I|L}]N[PG]A{[DA]|[EG]}PDPE;{M(Oxidation (M))|F}PDP{[DA]|[EG]}A[PG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKKWPDPE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{[DS]|[MA]|[CV]|TT}A[HT]{M(Oxidation (M))|F}H{I|L};[Y{I|L}]N[QP]{[DA]|[EG]}PDPE 5.4494;4.3252;4.01;3.7104;3.2778;2.9692;2.6696;2.51;2.4974;2.0458 +;-;-;-;-;-;-;-;-;- + 638 + NaN NaN 160234.2 NaN 14561 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18341 76.84 NaN 358800 35 0 21587 0.261 -1 KLEIQCPPF 9 80 566.2972883717671 1130.580023810334 2 567.8058471679688 MULTI HCD FTMS 0 0 0 18337 62271.9375 0.008854245832114674 -15 0.41210174560546875 4 Carbamidomethyl (C) _KLEIQC(Carbamidomethyl (C))PPF_ ENST00000368321.7_1_1:155883707-155883806:-|nuORF 13.90604991867851 0.24021115267848145 2 Y{I|L}SPA{I|L}AH{I|L}{M(Oxidation (M))|F} 10 -1 + 66.095 0 0 5.8461 5.8461 90.806 0 0 0 29.818233196907485 13.974315640635595 13.974315640635595 16.70941280735775 0 0 0 0 0 Y{I|L}SPA{I|L}AH{I|L}{M(Oxidation (M))|F};Y{I|L}SPA{I|L}[H{I|L}]A{M(Oxidation (M))|F};K{I|L}T[Y{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]}A{M(Oxidation (M))|F};Y{I|L}S[VS][R{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D[PG]{I|L}C(Carbamidomethyl (C))[VP]K;Y{I|L}H{[QN]|[E{I|L}]|[KN]}[KP][MT] 5.8461;4.3682;1.9061;1.6851;0.98113;0.20713 -;-;-;-;-;- 788 + NaN NaN 140937.3 NaN 14562 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18342 76.843 NaN 307420 35 0 19650 0.261 -1 CKDQGGNCCAT 11 65 578.7130342774539 1155.4115156217076 2 578.7135620117188 MULTI HCD FTMS 0 0 0 18337 69426.1015625 0.19399254796122445 -15 0.41210174560546875 5 Carbamidomethyl (C) _CKDQGGNC(Carbamidomethyl (C))CAT_ ENST00000506462.5_1_4:108745790-108816604:+|nuORF 2.735195868890462 0.4069250265843076 2 P{I|L}{M(Oxidation (M))|F}Q 4 -1 11.727 0 0 1.0149 0 0 652.1817010238545 0 652.1817010238545 0 2.429928190999389 0 0 0 0.1549471895720985 0 0 0 P{I|L}{M(Oxidation (M))|F}Q 1.0149 - 93 + NaN NaN 133172.3 NaN 14563 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18343 76.847 NaN 147980 35 0 17457 0.262 + 18234 MPDVDFNL 8 38 475.7179592982177 949.4213656632354 2 475.7176513671875 MULTI HCD FTMS 0 0 0 18337 68737.96875 0.5764383983817066 3 -0.08850860595703125 6 Unmodified _MPDVDFNL_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 D{M(Oxidation (M))|F}N{I|L} 4 4 37.251 0 0 3.9235 0 0 442.18855483222814 0 442.18855483222814 0 25.568109453757657 0 0 0 0.5 0 0 0.3807196863200844 + D{M(Oxidation (M))|F}N{I|L} 3.9235 + + 33 NaN NaN 103874.7 NaN 14564 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18344 76.85 NaN 167390 35 0 29973 0.261 + 26373 SSRKRLVE 8 54 487.79076118320455 973.5669694332091 2 487.7903137207031 MULTI HCD FTMS 0 0 0 18337 81229.328125 0.5049102881158839 -1 0.02618408203125 7 Unmodified _SSRKRLVE_ REV__ENSG00000156234|ENST00000682537|CXCL13 2.0597508629832335 0.5389364538378849 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5001 0 0 808.4881405531295 0 808.4881405531295 0 8.91773141135175 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5001 - 9 + NaN NaN 107225.5 NaN 14565 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18345 76.853 NaN 656170 35 0 103990 0.261 + 17113 LYLGLFNRL 9 78 554.8292396668196 1107.643926400439 2 554.8299560546875 MULTI HCD FTMS 0 0 0 18337 75152.0859375 0.044334943970061914 16 -0.4051513671875 8 Unmodified _LYLGLFNRL_ ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant 67.34385681178166 0.00994769994983633 2 [Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}RN{I|L} 9 2 + 74.108 0 0 6.6906 6.6906 87.167 0 0 0 24.13734275855269 69.31417813229345 24.13734275855269 5 0 2 1.6989700043360187 0 0.3807196863200844 [Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}RN{I|L};[Y{I|L}]{I|L}G{I|L}R{M(Oxidation (M))|F}N{I|L};[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}RN{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}RGG{I|L};[Y{I|L}]{I|L}G{I|L}{M(Oxidation (M))|F}R{I|L}N;[Y{I|L}]G{I|L}{I|L}R{M(Oxidation (M))|F}N{I|L};[Y{I|L}]{I|L}G{I|L}R{M(Oxidation (M))|F}GG{I|L};[Y{I|L}]{I|L}G{I|L}R{M(Oxidation (M))|F}{I|L}N;[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}RGG{I|L};[Y{I|L}]G{I|L}{I|L}{M(Oxidation (M))|F}R{I|L}N 6.6906;6.2392;5.9674;5.8593;5.8033;5.516;5.4078;5.3519;5.1361;5.0801 -;-;-;-;-;-;-;-;-;- 755 NaN NaN 181624.9 NaN 14566 3777 18337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18347 76.858 NaN 774220 35 0 191040 0.327 + 7030 FPYSYEVAL 9 76 544.7687251189523 1087.5228973047044 2 544.768798828125 MULTI HCD FTMS 0 0 0 18346 668717.25 0.27229938314806734 -14 0.38280487060546875 1 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 42.09456458481378 0.05572955244001856 2 {[{M(Oxidation (M))|F}C]|[YS]}NRHEVA{I|L} 9 4 + 66.965 0 0 6.1576 6.1576 88.791 0 0 0 5.6424927368725974 43.15318640437083 5.6424927368725974 9.208187539523749 0 1.5 0 0.6382104921644451 0 {[{M(Oxidation (M))|F}C]|[YS]}NRHEVA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}GGRHEVA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}YM[W{I|L}]{I|L} 6.1576;5.3109;2.4908 -;-;- 311 NaN NaN 204383.4 NaN 14567 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18348 76.863 NaN 323440 35 0 34996 0.261 + 15203 LNHLVPDIAW 10 55 589.3202632053724 1176.6259734775447 2 589.3189697265625 MULTI HCD FTMS 0 0 0 18346 131892.859375 0.05198814037636682 22 -0.471435546875 2 Unmodified _LNHLVPDIAW_ REV__ENSG00000179002|ENST00000375371|TAS1R2 16.149105407346934 0.3600587335443843 2 {M(Oxidation (M))|F}{I|L}AW 4 -1 39.781 0 0 3.381 0 0 641.3458119123062 0 641.3458119123062 0 1.4189566791857473 0 0 0 1.2614393726401687 0 0 0 {M(Oxidation (M))|F}{I|L}AW 3.381 - 170 NaN NaN 136513.7 NaN 14568 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18349 76.866 NaN 402800 35 0 27953 0.261 + 32792 WSHDIFYIF 9 70 614.2956938928323 1226.5768348524646 2 614.7939453125 MULTI HCD FTMS 0 0 0 18346 206915.6875 0.24470748570442755 17 -0.40076446533203125 3 Unmodified _WSHDIFYIF_ REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|68|3|anti-sense 21.74664581756881 0.17247014374749275 2 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 -1 + 75.468 0 0 6.1527 6.1527 91.335 0 0 0 28.36574344772764 47.275071725447404 28.36574344772764 17.21848749616356 0 0.805462187404089 1.6989700043360187 0.3807196863200844 1.0752574989159953 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV[{M(Oxidation (M))|F}V]P[MT];[YN]AWVY[{I|L}V]{[CP]|[EA]};{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}V[WE]{I|L}{M(Oxidation (M))|F};[MT][KA]CV[WE]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}VY[HK]{M(Oxidation (M))|F};[Y{I|L}]EEV[{M(Oxidation (M))|F}V]AEE;[MT][KA]YVWP[MT];{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}V[{M(Oxidation (M))|F}V]AEE;Q[YG]{[QG]|[NA]}VYY[H{I|L}] 6.1527;4.7489;4.2114;2.2689;2.1247;1.9585;1.6406;1.4519;1.1428;0.86704 -;-;-;-;-;-;-;-;-;- 509 NaN NaN 144738.6 NaN 14569 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18350 76.869 NaN 310270 35 0 30045 0.261 -1 LYMPKLLYF 9 70 602.3271995386184 1202.6398461440367 2 602.31298828125 MULTI HCD FTMS 0 0 0 18346 25661.435546875 0.728593004990763 -2 0.05568695068359375 4 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 23.1484247019978 0.1603590852062899 2 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 29.41 0 0 2.4455 0 0 0 776.4358415876492 776.4358415876492 15.82650597641134 0 0 0 0 0.7614393726401688 1.5228787452803376 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.4455 + + 100 NaN NaN 137103 NaN 14570 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18351 76.873 NaN 329810 35 0 47910 0.261 + -1 MLIFDLRGTH 10 76 609.818798672428 1217.6230444116559 2 610.8213500976562 MULTI HCD FTMS 0 0 0 18346 163784.53125 0.8293401402950832 -3 0.08522796630859375 5 Oxidation (M) _M(Oxidation (M))LIFDLRGTH_ REV__ENSG00000182783|ENST00000641069|OR2T29 9.38312468134398 0.42334543440173333 2 [YV]{I|L}QK{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 8 -1 45.583 0 0 3.7436 0 0 0 160.05216759928695 160.05216759928695 21.682437647924218 0 0 0 0 0 2 0 0 [YV]{I|L}QK{M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3.7436 - 459 NaN NaN 143765.2 NaN 14571 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18352 76.876 NaN 576840 35 0 97952 0.262 + 10225 IHLPHAPLF 9 74 522.803038036162 1043.5915231391239 2 522.8032836914062 MULTI HCD FTMS 0 0 0 18346 203163.15625 0.8231147738888407 -3 0.08522796630859375 6 Unmodified _IHLPHAPLF_ REV__ENSG00000169570|ENST00000510708|DTWD2;REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF;REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2 28.173230860318316 0.11963627304438548 2 AP{I|L}{M(Oxidation (M))|F} 4 -1 35.477 0 0 3.3995 0 0 597.3391014833994 0 597.3391014833994 0 26.012969751618087 0 0 0 1.5 0 0 0 AP{I|L}{M(Oxidation (M))|F} 3.3995 + + 202 + NaN NaN 183415.1 NaN 14572 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18353 76.879 NaN 251820 35 0 23562 0.261 + 11360 IYNGKLFDLL 10 76 598.3397450461429 1194.6649371590856 2 598.33984375 MULTI HCD FTMS 0 0 0 18346 68506.375 0.00779814840237069 33 -0.7690811157226562 7 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 53.40400417844725 0.06540992187319636 2 [Y{I|L}]N[Y{I|L}]N{[VA]|[{I|L}G]}{I|L}{I|L} 10 5 + 54.09 0 0 4.5277 4.5277 90.937 0 0 0 7.1400125535309655 28.22805036539442 7.1400125535309655 54.090475125574855 0 1.3807196863200843 2 0 0.566901560044258 [Y{I|L}]N[Y{I|L}]N{[VA]|[{I|L}G]}{I|L}{I|L} 4.5277 - 253 NaN NaN 133930.9 NaN 14573 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18354 76.883 NaN 362720 35 0 72593 0.262 + 10844 IVDSLEPVF 9 55 509.7764371699189 1017.5383214066378 2 509.776611328125 MULTI HCD FTMS 0 0 0 18346 222503.34375 1 0 0 8 Unmodified _IVDSLEPVF_ ENSG00000136045|ENST00000412830|PWP1 21.74664581756881 0.17247014374749275 2 E[VP]{M(Oxidation (M))|F} 4 5 33.5 0 0 3.2923 0 0 527.2949982655136 0 527.2949982655136 0 27.302046884880937 0 0 0 1.5 0 0.3807196863200844 0 + E[VP]{M(Oxidation (M))|F} 3.2923 + + 28 NaN NaN 154868.5 NaN 14574 3778 18346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18356 76.888 NaN 458930 35 0 110880 0.327 -1 0 51 413.1934580881088 824.3723632430176 2 413.1936340332031 MULTI HCD FTMS 0 0 0 18355 216261.09375 0.23670677454925235 -22 0.6013946533203125 1 NaN NaN 2 M 1 -1 12.218 0 0 1.4822 0 0 675.319901550438 0 675.319901550438 0 7.614393726401687 0 0 0 0 0 0 0 M 1.4822 - 6 + NaN NaN 158689.2 NaN 14575 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18357 76.892 NaN 728900 35 0 73735 0.261 + 2036 DECVPHLIF 9 86 536.7607522677655 1071.506951602331 2 536.253173828125 MULTI HCD FTMS 0 0 0 18355 36105.2890625 0.6484706246186015 2 -0.0557403564453125 2 Unmodified _DECVPHLIF_ REV__ENST00000526011.2_1_11:122484535-122484616:-|nuORF 16.942295170755138 0.21397866736869717 2 VQ{M(Oxidation (M))|F} 3 -1 25.736 0 0 2.4018 0 0 679.3013842912591 0 679.3013842912591 0 2.754289147761124 0 0 0 0.3807196863200844 0 0 0.28872548999643577 VQ{M(Oxidation (M))|F} 2.4018 - 472 + NaN NaN 194839.3 NaN 14576 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18358 76.896 NaN 214610 35 0 18119 0.261 + 11814 KELNQRIG 8 74 479.277491538702 956.540430144204 2 479.2772521972656 MULTI HCD FTMS 0 0 0 18355 120684.6484375 0.46421209224143467 6 -0.15343475341796875 3 Unmodified _KELNQRIG_ ENSG00000166669|ENST00000562102|ATF7IP2;nc|ENSG00000166669|Q5U623-2|ATF7IP2 4.75600775471527 0.5349361699807423 2 V 1 8 7.0116 0 0 0.73302 0 0 630.3461380072885 224.09711633853752 854.443254345826 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.73302 - 36 + NaN NaN 121556.6 NaN 14577 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18359 76.899 NaN 504930 35 0 34001 0.261 + 20305 NYPTESKEIF 10 80 614.2956938928323 1226.5768348524646 2 614.792236328125 MULTI HCD FTMS 0 0 0 18355 101945.0546875 0.12056465275296485 18 -0.3944091796875 4 Unmodified _NYPTESKEIF_ REV__ENSG00000179869|ENST00000435803|ABCA13;REV__nc|ENSG00000179869|Q86UQ4-4|ABCA13;REV__nc|ENSG00000179869|Q86UQ4|ABCA13 30.636539890814138 0.2266618088935899 2 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F} 9 -1 + 75.323 0 0 6.1409 6.1409 91.587 0 0 0 33.46787486224655 44.476708856926976 33.46787486224655 19.56485629844557 0 0.7614393726401688 1.6989700043360187 0.7302046884880937 1.23239816956497 [YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[YN]AWV[QT][QA]{M(Oxidation (M))|F};[MT][KA]CV[WE]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}V[WE]{I|L}{M(Oxidation (M))|F};[YN][TP][K{I|L}]YAEE;{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}VY[HK]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}V[HK]Y{M(Oxidation (M))|F};[Y{I|L}]EEV[{M(Oxidation (M))|F}V]AEE;{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}H]|[RQ]}V[{M(Oxidation (M))|F}V]AEE;{[{M(Oxidation (M))|F}C]|[YS]}[QP][K{I|L}]YAEE 6.1409;4.5458;2.4459;2.3346;2.2223;1.4902;1.3503;1.2516;0.98493;0.24505 -;-;-;-;-;-;-;-;-;- 522 NaN NaN 166929.5 NaN 14578 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18360 76.902 NaN 704660 35 0 164240 0.261 + 17253 LYPKTLFLL 9 72 554.344071215102 1106.6735894970038 2 554.3440551757812 MULTI HCD FTMS 0 0 0 18355 165501.109375 0.3273931593339374 -6 0.18682861328125 5 Unmodified _LYPKTLFLL_ ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA 32.78568957990786 0.09846250359632436 2 [Y{I|L}]VV[Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L} 9 3 + 39.159 0 0 3.5385 3.5385 84.172 0 0 0 13.431227203927037 8.21719669609444 8.21719669609444 8.979400086720378 0 1.3807196863200843 1.6989700043360187 0 0 [Y{I|L}]VV[Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]VV[KP]Y{I|L}{I|L};[Y{I|L}]VV[KP]{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T][Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T][KP]Y{I|L}{I|L} 3.5385;2.7271;2.111;0.91987;0.10848 -;-;-;-;- 161 NaN NaN 190231.5 NaN 14579 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18361 76.906 NaN 896450 35 0 65353 0.261 + 13796 KYPSPFFVF 9 90 566.2972883717671 1130.580023810334 2 567.3034057617188 MULTI HCD FTMS 0 0 0 18355 216981.375 0.0075485430374507365 -16 0.44173431396484375 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}DTA{I|L}AH{I|L}{M(Oxidation (M))|F} 9 8 65.773 0 0 5.8176 0 0 97.05712735410391 0 97.05712735410391 0 8.181277912325342 0 0 0 0.28872548999643577 0 0.7302046884880937 0 {M(Oxidation (M))|F}DTA{I|L}AH{I|L}{M(Oxidation (M))|F} 5.8176 - 1814 + NaN NaN 226937.1 NaN 14580 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18362 76.909 NaN 144890 35 0 32021 0.262 + 12595 KTTSRRKA 8 32 474.2909788073154 NaN 0 474.2912902832031 PEAK HCD FTMS 0 0 0 18355 19280.216796875 0.14715629665031543 1 -0.02950286865234375 7 Unmodified _KTTSRRKA_ REV__ENSG00000172403|ENST00000307142|SYNPO2;REV__nc|ENSG00000172403|Q9UMS6-3|SYNPO2;REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2;REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2;REV__nc|ENSG00000172403|Q9UMS6|SYNPO2 2.0597508629832335 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.57941 0 0 86.24209070213585 697.2899263971311 783.532017099267 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.57941 - 2 + NaN NaN 109398.3 NaN 14581 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18363 76.912 NaN 220650 35 0 53442 0.261 + 8735 HHGAGAFF 8 40 422.19827599432045 842.3819990554409 2 422.1988220214844 MULTI HCD FTMS 0 0 0 18355 30981.529296875 0.2386433169100037 -10 0.2715606689453125 8 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.7337 0 0 677.3029565523144 0 677.3029565523144 0 14.604093769761874 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7337 + + 5 + NaN NaN 129996.1 NaN 14582 3779 18355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18365 76.917 NaN 3043500 35 0 514260 0.327 + 5985 FPDQVAIQL 9 79 515.7819895057114 1029.5494260782227 2 515.7822265625 MULTI HCD FTMS 0 0 0 18364 2325104.25 0.6296543758678517 2 -0.0557403564453125 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 96.36657018975838 0.004359138328518304 2 QVA{I|L}Q{I|L} 6 3 70.411 0 0 6.839 0 0 359.1479664533219 0 359.1479664533219 0 55.233871898888154 0 0 0 2.305462187404089 0 0 1.1861818737241734 + QVA{I|L}Q{I|L} 6.839 + + 579 NaN NaN 561335.2 NaN 14583 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18366 76.922 NaN 1490600 35 0 226620 0.261 + 28531 TPQFPDMIL 9 87 539.26788511357 1076.5212172939398 2 539.268310546875 MULTI HCD FTMS 0 0 0 18364 707105.75 0.036300017228378896 42 -1.0413284301757812 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 53.40400417844725 0.026808823219830042 2 [YG]G[VP]PD{M(Oxidation (M))|F}{I|L}{I|L} 10 5 + 55.531 0 0 5.1583 5.1583 83.797 0 0 0 2.9529427553855285 16.532125137753432 2.9529427553855285 2.9529427553855285 0 1.25 1.6989700043360187 0.6989700043360187 0 [YG]G[VP]PD{M(Oxidation (M))|F}{I|L}{I|L};[QP]T{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP]Q{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[TP][AG]{M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L};[YN][VP]PD{M(Oxidation (M))|F}{I|L}{I|L} 5.1583;4.884;4.6395;3.7841;3.4166 -;-;+;-;- + 1104 NaN NaN 328183.7 NaN 14584 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18367 76.925 NaN 1029200 35 0 142570 0.261 + 29285 TYLPTSPLL 9 73 502.78687223990454 1003.5591915466091 2 502.78692626953125 MULTI HCD FTMS 0 0 0 18364 308521.4375 0.5981240251701115 -1 0.02950286865234375 3 Unmodified _TYLPTSPLL_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 128.3654064809346 0.00070410514679239 2 [YT]{I|L}PTSP{I|L}{I|L} 9 0 + 92.251 0 0 9.1924 9.1924 96.763 0 0 0 19.990823894397565 78.27168750566507 19.990823894397565 23.908555305749317 0 2.4361818737241734 1.5228787452803376 1.360924374808178 0 + + [YT]{I|L}PTSP{I|L}{I|L};[Y{I|L}]TPTSP{I|L}{I|L};[{I|L}P][YT]TSP{I|L}{I|L} 9.1924;6.81;6.503 +;-;- + 253 NaN NaN 252524.1 NaN 14585 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18368 76.929 NaN 775320 35 0 194270 0.261 + 16453 LSRFAYILP 9 81 540.31632745031 1078.61810196742 2 541.8397827148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LSRFAYILP_ REV__ENSG00000124089|ENST00000243911|MC3R 11.640296217721598 0.25978676193971967 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 -1 30.502 0 0 2.8279 0 0 0 718.3901478595607 718.3901478595607 14.584296476126326 0 0 0 0 0 1.6989700043360187 0.3054621874040891 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 2.8279 - 90 NaN NaN 201442.7 NaN 14586 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18369 76.932 NaN 435890 35 0 35269 0.261 + -1 LFDVPSACL 9 80 511.25347395230807 NaN 0 511.263916015625 PEAK HCD FTMS 0 0 0 18364 9565.3779296875 0.23538330269528918 14 -0.33245086669921875 5 Carbamidomethyl (C) _LFDVPSAC(Carbamidomethyl (C))L_ REV__ENST00000545137.5_1_15:74486162-74488565:-|nuORF 15.847184025352803 0.21527282152051216 2 T{I|L}E[NG]D 6 -1 20.596 0 0 2.0182 0 0 131.07643025716987 257.1292811607797 388.2057114179496 0 0 0 0 0 0 0 0.7302046884880937 0.805462187404089 T{I|L}E[NG]D 2.0182 - 199 + NaN NaN 145531.4 NaN 14587 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18370 76.935 NaN 434360 35 0 42030 0.261 + 6704 FPPLYEDIM 9 62 570.7674829066474 1139.5204128800947 2 571.269287109375 MULTI HCD FTMS 0 0 0 18364 33822.59765625 0.5845640552636984 -5 0.14423370361328125 6 Oxidation (M) _FPPLYEDIM(Oxidation (M))_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 57.47134341890925 0.0211188941628804 2 YED{I|L}{M(Oxidation (M))|F} 5 4 68.513 0 0 6.0125 0 0 454.2583146289683 0 454.2583146289683 0 59.019862825870675 0 0 0 2.3494850021680094 0 0.7059771852360797 0 + YED{I|L}{M(Oxidation (M))|F} 6.0125 + + 92 + NaN NaN 163927.1 NaN 14588 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18371 76.938 NaN 151140 35 0 12677 0.262 -1 0 56 468.25544832525384 934.4963437173077 2 468.255615234375 MULTI HCD FTMS 0 0 0 18364 30746.228515625 0.24582021579616106 18 -0.38732147216796875 7 NaN NaN 2 [QP]G 3 -1 8.072 0 0 0.86378 0 0 0 649.3361624031077 649.3361624031077 1.4781748188863748 0 0 0 0 0 0 0 0 [QP]G 0.86378 - 28 NaN NaN 110516.3 NaN 14589 3780 18364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18373 76.943 NaN 444080 35 0 25623 0.327 + 12407 KPGKGARAE 9 76 457.2642804947058 912.5140080562117 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18372 472029.03125 0.627847940790398 25 -0.5323715209960938 1 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 11.479 0 0 1.258 0 0 414.2452795300467 367.1962069147094 781.441486444756 0 0 0 0 0 0.75 0 0 0 Q 1.258 - 61 + NaN NaN 152113.6 NaN 14590 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18374 76.948 NaN 1213100 35 0 148020 0.261 + 26799 SYIDLLQRF 9 78 577.8137562564947 1153.6129595797893 2 577.814208984375 MULTI HCD FTMS 0 0 0 18372 675548.375 0.4666155475458764 -4 0.11474609375 2 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 191.38036244623 2.972967745938989E-13 2 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8 2 97.904 0 0 8.4867 0 0 193.07498804901553 0 193.07498804901553 0 90.32394510074609 0 0 0 2.9916440611282624 0 0 1.6496498648046138 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8.4867 - 898 + NaN NaN 268562.9 NaN 14591 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18375 76.951 NaN 357110 35 0 32429 0.261 + 33849 YLLACFYLL 9 68 559.803164195243 NaN 0 559.8158569335938 PEAK HCD FTMS 0 0 0 18372 8920.453125 0.5199772894914716 -2 0.0557403564453125 3 Unmodified _YLLACFYLL_ ENSG00000103335|ENST00000301015|PIEZO1 9.347437153973935 0.2499504662953367 2 Y{I|L}{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F}D 7 5 17.44 0 0 1.5605 0 0 131.06973705845297 162.05600916080314 293.12574621925614 0 0 0 0 0 0 0 0.3494850021680094 0 Y{I|L}{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F}D 1.5605 - 112 + NaN NaN 147353.2 NaN 14592 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18376 76.955 NaN 311710 35 0 26616 0.261 + 27149 SYMWTINNF 9 74 596.2605005992127 1190.5064482652253 2 596.2605590820312 MULTI HCD FTMS 0 0 0 18372 223975.234375 0.2241651442831724 12 -0.2904052734375 4 Oxidation (M) _SYM(Oxidation (M))WTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 60.07390631473393 0.0174780869009295 2 WT{I|L}NG{[CT]|[{M(Oxidation (M))|F}G]} 7 5 51.26 0 0 4.3058 0 0 397.13246527606697 0 397.13246527606697 0 35.10290438648937 0 0 0 1.8494850021680094 0 0 0.7059771852360797 WT{I|L}NG{[CT]|[{M(Oxidation (M))|F}G]} 4.3058 - 431 + NaN NaN 131440 NaN 14593 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18377 76.958 NaN 527620 35 0 44037 0.261 -1 QMCCGPFLL 9 74 563.2490478537982 1124.4835427743963 2 563.2485961914062 MULTI HCD FTMS 0 0 0 18372 255025.984375 0.6215940251401548 -11 0.29445648193359375 5 2 Carbamidomethyl (C) _QMC(Carbamidomethyl (C))C(Carbamidomethyl (C))GPFLL_ ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9-3|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130 16.942295170755138 0.21397866736869717 2 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 35.767 0 0 3.1808 0 0 250.09495988261295 0 250.09495988261295 0 24.313725836429896 0 0 0 2.110924374808178 0 0 0 AD[C(Carbamidomethyl (C))H]{M(Oxidation (M))|F}{I|L}{I|L} 3.1808 - 92 NaN NaN 170444.5 NaN 14594 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18378 76.961 NaN 592480 35 0 219450 0.261 + 35515 YYFSKLIEF 9 63 605.313031533974 1208.611510134748 2 606.2998046875 MULTI HCD FTMS 0 0 0 18372 33991.125 0.016737176068009084 22 -0.44745635986328125 6 Unmodified _YYFSKLIEF_ ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 29.081581746732265 0.1154664336125038 2 YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 28.746 0 0 2.3784 0 0 0 585.3423555963499 585.3423555963499 19.793643751248958 0 0 0 0 0.6861818737241735 1.5228787452803376 0 0 YY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3784 - 68 + NaN NaN 189355.4 NaN 14595 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18379 76.965 NaN 323820 35 0 27967 0.261 + 29277 TYLPQSYLI 9 55 549.2976446826813 1096.5807364321624 2 549.2976684570312 MULTI HCD FTMS 0 0 0 18372 135133.34375 0.2980222646929034 8 -0.21517181396484375 7 Unmodified _TYLPQSYLI_ ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B 49.55428908609986 0.03219431099695407 2 [YT]{I|L}[QP]SY{I|L}{I|L} 9 0 + 69.944 0 0 6.3784 6.3784 90.269 0 0 0 10.791812460476251 16.478174818886373 10.791812460476251 10.791812460476251 0 1.805462187404089 1.3979400086720375 0.3807196863200844 0 + + [YT]{I|L}[QP]SY{I|L}{I|L};[Y{I|L}]T[QP]SY{I|L}{I|L};[YT]{I|L}[QP]V[YT]{I|L};[Y{I|L}]T[QP]V[YT]{I|L} 6.3784;5.3942;4.369;3.3849 +;-;-;- + 130 NaN NaN 139199.1 NaN 14596 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18380 76.968 NaN 317060 35 0 39517 0.261 + 35517 YYFSTISSSF 10 72 601.274179765168 1200.533806597136 2 601.2747802734375 MULTI HCD FTMS 0 0 0 18372 69720.1953125 0.6132429137175349 1 -0.02950286865234375 8 Unmodified _YYFSTISSSF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 53.832793166522166 0.06385051108671999 2 {I|L}SSS{M(Oxidation (M))|F} 5 5 40.49 0 0 3.3726 0 0 661.2760684152985 0 661.2760684152985 0 14.969165662315689 0 0 0 1.4291746928241125 0 0.8494850021680094 0 + {I|L}SSS{M(Oxidation (M))|F} 3.3726 + + 215 + NaN NaN 136390.7 NaN 14597 3781 18372 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18382 76.973 NaN 3945000 35 0 436690 0.327 + 13560 KYPENFFLL 9 112 585.8131605635726 1169.6117681939452 2 585.8138427734375 MULTI HCD FTMS 0 0 0 18381 2650096.25 0.013471169176530526 57 -1.4612045288085938 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.946 0 0 8.2887 8.2887 91.103 0 0 0 7.964627740862085 16.478174818886373 7.964627740862085 7.964627740862085 0 2.555462187404089 0 0.2742275032520141 2.00552339309072 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 8.2887;7.6078;7.5014;7.2636;6.8205;6.586;6.5827;6.5264;6.4763;6.3963 +;-;-;-;-;-;-;-;-;- + 4651 NaN NaN 496032.5 NaN 14598 3782 18381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18383 76.977 NaN 3379500 35 0 512670 0.247 + 26666 SYADQMFLL 9 99 552.2575729466772 1102.5005929601543 2 552.2578125 MULTI HCD FTMS 0 0 0 18381 2225488.75 0.6844218735632219 -6 0.17043304443359375 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 168.65858592105317 4.556178112754322E-09 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 99.469 0 0 9.0221 9.0221 91.905 0 0 0 9.282322625996898 61.879121397789255 9.282322625996898 7.644979867444206 0 2.2302046884880937 0 2.0818831717329793 1.0484550065040281 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AQD{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}QDAYS;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}ENAYS;{[{M(Oxidation (M))|F}C]|[YS]}AEVV[YC(Carbamidomethyl (C))]{I|L};[MT]{[CT]|[{M(Oxidation (M))|F}G]}[DV]AYS{I|L} 9.0221;8.3287;8.169;7.2359;6.5425;6.156;2.2517;2.191;2.1789;1.7551 +;-;-;-;-;-;-;-;-;- + 3221 NaN NaN 570868.5 NaN 14599 3782 18381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18384 76.981 NaN 1137400 35 0 161140 0.261 -1 CKKFNLMLM 9 70 592.8026566945545 1183.5907604559088 2 592.8240966796875 MULTI HCD FTMS 0 0 0 18381 31374.552734375 0.015466010915400638 53 -1.3630599975585938 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))KKFNLMLM_ nc|nan|Q9HD87|C6orf50 7.289230182591677 0.29575926068275815 2 MVEGETVD 8 -1 52.9 0 0 4.4695 0 0 0 320.1975191705688 320.1975191705688 35.80488418417737 0 0 0 0 0 0 0.6549471895720984 0 MVEGETVD 4.4695 - 393 + NaN NaN 256106.9 NaN 14600 3782 18381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18385 76.984 NaN 395420 35 0 35504 0.261 -1 0 81 526.7731478192227 1051.5317427052453 2 526.7730102539062 MULTI HCD FTMS 0 0 0 18381 108020.21875 0.201961239814581 4 -0.094329833984375 4 NaN NaN 2 {I|L}MDQVA{I|L} 7 -1 76.834 0 0 7.3068 0 0 0 278.11155115299067 278.11155115299067 58.149123126898274 0 0 0 0 1.8921590589602533 1.5228787452803376 0.4247425010840047 0 {I|L}MDQVA{I|L} 7.3068 - 176 + NaN NaN 155409.5 NaN 14601 3782 18381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18386 76.987 NaN 225350 35 0 16466 0.261 + 28699 TSLIRRGQ 8 62 465.77746469421976 929.5403764552395 2 465.77752685546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TSLIRRGQ_ REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|52|1|anti-sense 2.302733041254933 0.5385759549224092 2 V 1 -1 3.0989 0 0 0.33338 0 0 603.347305021449 224.09693323306877 827.4442382545177 0 0 0 0 0 0 0 0 0 V 0.33338 - 6 + NaN NaN 116605.9 NaN 14602 3782 18381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18387 76.991 NaN 365230 35 0 46690 0.261 + 33300 YFQISPCDEF 10 59 624.767361472308 1247.520170011416 2 624.7673950195312 MULTI HCD FTMS 0 0 0 18381 101122.1953125 0.2859567440429696 -3 0.08524322509765625 6 Unmodified _YFQISPCDEF_ REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF 20.41453444215458 0.3201613495159799 2 DVQCVDE{M(Oxidation (M))|F} 8 -1 68.793 0 0 5.5144 0 0 294.12108046699376 0 294.12108046699376 0 54.100103527040844 0 0 0 0 0 0.805462187404089 0.6237125054200234 DVQCVDE{M(Oxidation (M))|F} 5.5144 - 291 NaN NaN 150619.2 NaN 14603 3782 18381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18389 76.995 NaN 4006100 35 0 655180 0.327 + 13797 KYPSPFFVF 9 100 566.2972883717671 1130.580023810334 2 566.2974853515625 MULTI HCD FTMS 0 0 0 18388 2564237.5 0.023068312982320587 -12 0.33034515380859375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 147.05914393524117 1.1935124485855994E-05 2 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 92.869 0 0 8.2143 8.2143 93.163 0 0 0 9.442802559748458 9.442802559748458 9.442802559748458 9.442802559748458 0 2.8494850021680094 0 0.9802046884880937 1.2510912013506124 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.2143;7.3791;6.9732;6.7207;6.1563;6.1345;5.9088;5.7618;5.5568;5.4796 +;+;-;-;-;-;-;-;-;- + 4833 NaN NaN 704990 NaN 14604 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18390 77 NaN 1426100 35 0 396000 0.261 + 7031 FPYSYEVAL 9 74 544.7687251189523 1087.5228973047044 2 544.768798828125 MULTI HCD FTMS 0 0 0 18388 1021156.1875 0.41581131629860335 -9 0.25542449951171875 2 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 67.34385681178166 0.00994769994983633 2 EVA{I|L} 4 5 58.32 0 0 5.3627 0 0 657.2786560474409 0 657.2786560474409 0 47.86273027619883 0 0 0 1.5 0 1.1382104921644451 0 + EVA{I|L} 5.3627 + + 76 NaN NaN 313578 NaN 14605 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18391 77.003 NaN 425480 35 0 38172 0.261 + 18224 MPDPWAEFHL 10 72 629.7818681235054 1257.5491833138108 2 629.7813110351562 MULTI HCD FTMS 0 0 0 18388 193491.890625 0.7747384272350989 -9 0.25542449951171875 3 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 107.1870275148908 5.4647617103297364E-05 2 {M(Oxidation (M))|F}PDPWAE{M(Oxidation (M))|F}H{I|L} 10 0 + 67.829 0 0 5.3937 5.3937 90.272 0 0 0 46.85972531752853 9.131806016604358 9.131806016604358 18.949791016870066 0 2.6989700043360187 0 0.6505149978319906 0 + + {M(Oxidation (M))|F}PDPWAE{M(Oxidation (M))|F}H{I|L};[YN]{I|L}[YC(Carbamidomethyl (C))]E{M(Oxidation (M))|F}H{I|L};[YN]{I|L}{[YC]|[HE]}GE{M(Oxidation (M))|F}H{I|L};{M(Oxidation (M))|F}QG[Y{M(Oxidation (M))|F}]AE{M(Oxidation (M))|F}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YK]Q{M(Oxidation (M))|F}GKE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YK]Q{M(Oxidation (M))|F}G[SG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DKKWPDPE;{M(Oxidation (M))|F}[AG]G[Y{M(Oxidation (M))|F}]AE{M(Oxidation (M))|F}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YK]Q{M(Oxidation (M))|F}[NS]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[YK][AG]{M(Oxidation (M))|F}GKE 5.3937;3.8868;3.6881;3.1074;2.651;2.4781;2.4544;2.3786;2.3346;1.9223 +;-;-;-;-;-;-;-;-;- + 544 + NaN NaN 152205.3 NaN 14606 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18392 77.007 NaN 616340 35 0 76252 0.261 + 24080 RYAITVWYF 9 62 609.818798672428 1217.6230444116559 2 609.819091796875 MULTI HCD FTMS 0 0 0 18388 138393.875 0.677236724957969 -2 0.052093505859375 4 Unmodified _RYAITVWYF_ ENSG00000135766|ENST00000366641|EGLN1;ENSG00000269858|ENST00000303961|EGLN2;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;ENST00000593477.1_1_19:41313377-41313766:+|nuORF;nc|ENSG00000135766|Q9GZT9-2|EGLN1;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000269858|Q96KS0-2|EGLN2 22.736283301280096 0.1639198954644489 2 Q{[TV]|[{I|L}S]}WY{M(Oxidation (M))|F} 6 4 39.654 0 0 3.2566 0 0 375.21556288886876 0 375.21556288886876 0 23.0866814795592 0 0 0 1.3494850021680094 0 0.4247425010840047 0 Q{[TV]|[{I|L}S]}WY{M(Oxidation (M))|F} 3.2566 - 73 NaN NaN 187507 NaN 14607 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18393 77.01 NaN 382270 35 0 31048 0.261 + -1 YIYKLMALF 9 67 589.3202632053724 1176.6259734775447 2 589.8203125 MULTI HCD FTMS 0 0 0 18388 66834.4609375 0.051367574960728 27 -0.6089324951171875 5 Oxidation (M) _YIYKLM(Oxidation (M))ALF_ REV__ENSG00000132640|ENST00000378226|BTBD3;REV__nc|ENSG00000132640|Q9Y2F9-2|BTBD3 16.942295170755138 0.21397866736869717 2 YY{I|L} 3 -1 35.19 0 0 2.9907 0 0 0 734.3933434328759 734.3933434328759 1.6896155137222024 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 YY{I|L} 2.9907 - 69 NaN NaN 151539.2 NaN 14608 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18394 77.013 NaN 433110 35 0 54225 0.261 + 15771 LPGAVHFLPL 10 67 532.3186361594312 1062.6227193856623 2 532.8204345703125 MULTI HCD FTMS 0 0 0 18388 66143.8515625 0.9458967000697378 2 -0.04560089111328125 6 Unmodified _LPGAVHFLPL_ ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP 24.67388899826682 0.2803207841117527 2 [{I|L}P]VHQ{M(Oxidation (M))|F}P{I|L}{I|L} 9 5 + 63.835 0 0 6.0073 6.0073 93.482 0 0 0 22.376430167995878 44.37076236157729 22.376430167995878 63.83471251333795 0 1.274227503252014 1.5228787452803376 0 0 [{I|L}P]VHQ{M(Oxidation (M))|F}P{I|L}{I|L} 6.0073 - 226 NaN NaN 157972.5 NaN 14609 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18395 77.017 NaN 157690 35 0 22041 0.263 -1 0 55 404.1881635092436 806.3617740852873 2 404.1886291503906 MULTI HCD FTMS 0 0 0 18388 60528.28125 0.15241972075841226 -18 0.4940643310546875 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.38431 0 0 172.15896754407476 484.1374910943969 656.2964586384717 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.38431 - 12 + NaN NaN 111108 NaN 14610 3783 18388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18397 77.022 NaN 452520 35 0 41799 0.327 + 35891 YYSKFFDLI 9 92 598.305847113835 1194.5971412944698 2 598.30517578125 MULTI HCD FTMS 0 0 0 18396 92307.171875 0.1917738488344002 -13 0.35645294189453125 1 Unmodified _YYSKFFDLI_ ENSG00000132300|ENST00000254630|PTCD3;ENST00000469585.5_1_2:86355098-86362111:+|nuORF;ENST00000487043.5_1_2:86355098-86363686:+|nuORF;ENST00000493430.5_1_2:86358220-86360412:+|nuORF;nc|ENSG00000132300|Q96EY7-2|PTCD3 59.368380827593164 0.01846506874148156 2 YYS 3 6 45.819 0 0 3.8355 0 0 0 778.4171301073364 778.4171301073364 6.834843577808201 0 0 0 0 0.7742275032520141 2 0.3807196863200844 0 + YYS 3.8355 + + 579 + NaN NaN 159293.1 NaN 14611 3784 18396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18398 77.026 NaN 326380 35 0 33849 0.261 -1 LYMPKLLYF 9 70 602.3270345731274 NaN 0 602.31298828125 PEAK HCD FTMS 0 0 0 18396 32320.78125 1 0 0 2 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 28.486842064014134 0.13043271994793734 2 {M(Oxidation (M))|F} 1 -1 10.401 0 0 0.86485 0 0 779.4573395546548 273.1240328424438 1052.5813723970987 0 0 0 0 0 0.7302046884880937 0 0 0 {M(Oxidation (M))|F} 0.86485 + + 65 + NaN NaN 140837.1 NaN 14612 3784 18396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18399 77.03 NaN 348590 35 0 105430 0.262 + -1 WLVPCAIL 8 63 486.2739814739889 970.5334100147778 2 486.27349853515625 MULTI HCD FTMS 0 0 0 18396 48789.44140625 0.686632377461261 -1 0.0261077880859375 3 Carbamidomethyl (C) _WLVPC(Carbamidomethyl (C))AIL_ REV__ENSG00000171928|ENST00000307767|TVP23B;REV__ENST00000572845.1_1_17:18700909-18702331:+|nuORF 24.20995872069341 0.415665547393293 2 {I|L}{I|L}A{I|L}{I|L} 5 -1 36.414 0 0 3.752 0 0 429.1606922834 0 429.1606922834 0 27.703037561203843 0 0 0 0.7742275032520141 0 0 0 {I|L}{I|L}A{I|L}{I|L} 3.752 - 151 NaN NaN 146693 NaN 14613 3784 18396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18400 77.033 NaN 437650 35 0 64828 0.261 + 31406 VYALVVVSY 9 60 506.7893042143033 1011.5640554954066 2 506.7891540527344 MULTI HCD FTMS 0 0 0 18396 42162.69140625 0.16412150446624504 -3 0.0782012939453125 4 Unmodified _VYALVVVSY_ ENSG00000198856|ENST00000361564|OSTC;ENST00000510556.1_1_4:109571811-109578607:+|nuORF;nc|ENSG00000198856|Q9NRP0-2|OSTC 36.04419817259434 0.08350412372117409 2 VVVSY 5 4 50.49 0 0 4.9912 0 0 446.2520372045108 0 446.2520372045108 0 8.106121657239953 0 0 0 1.8807196863200843 0 0 0 + VVVSY 4.9912 + + 130 + NaN NaN 153060.4 NaN 14614 3784 18396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18401 77.036 NaN 214330 35 0 67432 0.261 + -1 LYRNEMCL 8 37 529.242298967646 1056.4700450020919 2 529.744384765625 MULTI HCD FTMS 0 0 0 18396 34009.92578125 0.8318106234131638 1 -0.01949310302734375 5 Oxidation (M) _LYRNEM(Oxidation (M))CL_ REV__ENSG00000181982|ENST00000635206|CCDC149;REV__ENST00000324309.8_1_4:24833126-24981729:-|nuORF;REV__nc|ENSG00000181982|Q6ZUS6-2|CCDC149;REV__nc|ENSG00000181982|Q6ZUS6-4|CCDC149;REV__nc|ENSG00000181982|Q6ZUS6-5|CCDC149;REV__nc|ENSG00000181982|Q6ZUS6-6|CCDC149;REV__nc|ENSG00000181982|Q6ZUS6|CCDC149 2.577480529830294 0.5381683276125971 2 W 1 -1 3.4949 0 0 0.3308 0 0 699.2797506679107 168.09473596744377 867.3744866353544 0 0 0 0 0 0 0 0 0 W 0.3308 - 7 + NaN NaN 121477.6 NaN 14615 3784 18396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18403 77.041 NaN 1341000 35 0 371920 0.327 + 11658 IYVNLIFLL 9 79 554.344071215102 1106.6735894970038 2 554.3442993164062 MULTI HCD FTMS 0 0 0 18402 505511.8125 1 0 0 1 Unmodified _IYVNLIFLL_ REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF 28.486842064014134 0.11819662193267319 2 [Y{I|L}]VV[Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 40.608 0 0 3.6694 3.6694 83.9 0 0 0 11.935749724493121 12.67606240177031 11.935749724493121 8.010299956639805 0 1.3494850021680094 1.6989700043360187 0 0 [Y{I|L}]VV[Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]VV[KP]Y{I|L}{I|L};[Y{I|L}]VV[KP]{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T][Q{I|L}]{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T][KP]Y{I|L}{I|L} 3.6694;2.9455;2.2702;1.0508;0.32694 -;-;-;-;- 140 NaN NaN 294440.1 NaN 14616 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18404 77.045 NaN 225580 35 0 38409 0.261 + 14784 LIGSVRQGQ 9 64 479.277491538702 956.540430144204 2 479.2774658203125 MULTI HCD FTMS 0 0 0 18402 124211.0390625 0.4777763126396869 12 -0.24097442626953125 2 Unmodified _LIGSVRQGQ_ REV__ASAP2-CPSF3|1|fusion;REV__ASAP2-CPSF3|2|fusion;REV__ASAP2-CPSF3|4|fusion;REV__ENSG00000119203|ENST00000238112|CPSF3 3.944395688203298 0.32111559684428237 2 V 1 -1 7.3464 0 0 0.76801 0 0 586.3204116889291 268.12375818424067 854.4441698731698 0 0 0 0 0 0.4247425010840047 0 0 0 V 0.76801 + + 35 + NaN NaN 130234.7 NaN 14617 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18405 77.049 NaN 384280 35 0 40084 0.261 + 35892 YYSKFFDLI 9 84 598.305847113835 1194.5971412944698 2 598.3057250976562 MULTI HCD FTMS 0 0 0 18402 124994.421875 0.259683628897871 -12 0.34026336669921875 3 Unmodified _YYSKFFDLI_ ENSG00000132300|ENST00000254630|PTCD3;ENST00000469585.5_1_2:86355098-86362111:+|nuORF;ENST00000487043.5_1_2:86355098-86363686:+|nuORF;ENST00000493430.5_1_2:86358220-86360412:+|nuORF;nc|ENSG00000132300|Q96EY7-2|PTCD3 55.23464941255904 0.024247875903973527 2 YYSK{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{I|L}{I|L} 9 0 + 68.783 0 0 5.7579 5.7579 90.458 0 0 0 15.669015600442577 15.897803053245951 15.669015600442577 15.669015600442577 0 1.8979400086720375 2 0.7742275032520141 0 + + YYSK{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{I|L}{I|L};[KS]YY{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{I|L}{I|L};M{I|L}D[KQ][YG]D{I|L}{I|L};[KS]YY[VP]YY{I|L} 5.7579;4.4462;1.9038;1.203 +;-;-;- + 608 NaN NaN 154356 NaN 14618 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18406 77.052 NaN 394570 35 0 35180 0.261 + 10226 IHLPHAPLF 9 76 522.803038036162 1043.5915231391239 2 522.80322265625 MULTI HCD FTMS 0 0 0 18402 71560.3359375 0.2899264355891537 4 -0.1174774169921875 4 Unmodified _IHLPHAPLF_ REV__ENSG00000169570|ENST00000510708|DTWD2;REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF;REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2 28.173230860318316 0.11963627304438548 2 AP{I|L}{M(Oxidation (M))|F} 4 -1 43.175 0 0 4.1372 0 0 597.3391942760317 0 597.3391942760317 0 26.704780657136524 0 0 0 1.4247425010840047 0 0 0 AP{I|L}{M(Oxidation (M))|F} 4.1372 + + 173 + NaN NaN 145026.7 NaN 14619 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18407 77.056 NaN 227070 35 0 10594 0.261 + 6463 FPIKYVNDFF 10 67 645.3318165688922 1288.6490802045844 2 645.3311767578125 MULTI HCD FTMS 0 0 0 18402 74905.8828125 0.8781850277511676 -2 0.04560089111328125 5 Unmodified _FPIKYVNDFF_ ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET 24.957077063307313 0.27767193849951033 2 ND{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 6 39.073 0 0 3.0321 0 0 747.4312000959 0 747.4312000959 0 27.193714675756254 0 0 0 0.4247425010840047 0 0 0.28872548999643577 + ND{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.0321 + + 87 NaN NaN 122561.8 NaN 14620 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18408 77.059 NaN 325720 35 0 49031 0.264 -1 0 77 404.1881635092436 806.3617740852873 2 404.1874084472656 MULTI HCD FTMS 0 0 0 18402 42940.47265625 0.10813085579726191 -16 0.42499542236328125 6 NaN NaN 2 [C(Carbamidomethyl (C))M][WP]T{I|L} 6 -1 [C(Carbamidomethyl (C))M][WP]T + + 12.764 -2.1838 -0.3234 1.5829 1.5829 59.716 0 0 0 0 0.2899597348884342 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M][WP]T{I|L} 1.5829 - 30 + NaN NaN 131585.3 NaN 14621 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18409 77.062 NaN 129570 35 0 9613.2 0.261 + -1 LCGRSKEPYDE 11 55 451.87619291075623 1352.6067493324688 3 451.8753356933594 MULTI HCD FTMS 0 0 0 18402 38165.87109375 0.5689444094863986 -2 0.04560089111328125 7 Carbamidomethyl (C) _LC(Carbamidomethyl (C))GRSKEPYDE_ REV__ENSG00000100191|ENST00000266086|SLC5A4 2.6312355333042263 0.4073809613003177 2 {I|L} 1 -1 6.9897 0 0 0.51676 0 0 580.2035643732876 656.2948092096311 1236.4983735829187 0 0 0 0 0 0 0 0 0 {I|L} 0.51676 + + 1 + NaN NaN 117386.5 NaN 14622 3785 18402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18411 77.067 NaN 1585200 35 0 271570 0.327 + 5986 FPDQVAIQL 9 56 515.7819895057114 1029.5494260782227 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18410 1213428.625 0.32860489740817445 8 -0.18238067626953125 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 70.33199760932243 0.0089807860198535 2 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 7 5 63.364 0 0 6.1546 0 0 242.12649733711095 0 242.12649733711095 0 49.55214169069926 0 0 0 1.9247425010840047 0 0 0.3807196863200844 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 6.1546 - 227 NaN NaN 329898.6 NaN 14623 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18412 77.072 NaN 950950 35 0 147330 0.261 + 28532 TPQFPDMIL 9 70 539.26788511357 1076.5212172939398 2 539.268310546875 MULTI HCD FTMS 0 0 0 18410 546469.8125 0.028053602461214588 48 -1.232513427734375 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 55.50274090549119 0.023872834264864425 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 6 3 42.93 0 0 3.9878 0 0 326.1595631330094 0 326.1595631330094 0 17.090606190045108 0 0 0 1.4247425010840047 0 0.6989700043360187 0 + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{I|L}{I|L} 3.9878 + + 396 NaN NaN 226444 NaN 14624 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18413 77.075 NaN 8611800 35 0 2060500 0.261 + 24628 RYLPTGSFPFL 11 112 649.3509043444546 NaN 0 649.3505249023438 PEAK HCD FTMS 0 0 0 18410 433222.25 0.9583532081310943 -1 0.0261383056640625 3 Unmodified _RYLPTGSFPFL_ ENSG00000104723|ENST00000503731|TUSC3;nc|ENSG00000104723|Q13454-2|TUSC3 120.54327133905097 7.722930518977906E-11 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}SGTP{I|L} 8 8 97.46 0 0 7.5161 0 0 131.09451270241 316.14140843335355 447.23592113576353 0 0 0 0 0 3.504432191740108 0 2.305462187404089 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}SGTP{I|L} 7.5161 - 13707 + NaN NaN 1403644 NaN 14625 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18414 77.078 NaN 1084500 35 0 134400 0.264 + 29286 TYLPTSPLL 9 89 502.78687223990454 1003.5591915466091 2 502.78680419921875 MULTI HCD FTMS 0 0 0 18410 272711.75 0.5287005368020339 5 -0.14322662353515625 4 Unmodified _TYLPTSPLL_ ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC 128.3654064809346 0.00070410514679239 2 [YT]{I|L}PTSP{I|L}{I|L} 9 0 + 92.952 0 0 9.2622 9.2622 92.217 0 0 0 20.87128018967597 76.30240471117786 20.87128018967597 7.888176959982729 0 2.4604093769761874 1.5228787452803376 1.3556270500406937 0 + + [YT]{I|L}PTSP{I|L}{I|L};[YT]{I|L}TPSP{I|L}{I|L};[YT]T{I|L}PSP{I|L}{I|L};[{I|L}P][YT]TSP{I|L}{I|L};[YT]{I|L}PP{[MG]|[TS]}{I|L}{I|L};[{I|L}P][YT]P{[MG]|[TS]}{I|L}{I|L} 9.2622;8.4762;6.9815;6.3008;5.9881;3.0267 +;-;-;-;-;- + 517 NaN NaN 253507.3 NaN 14626 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18415 77.082 NaN 441690 35 0 28320 0.261 + 5517 FLDGNELTL 9 85 511.2636532049547 1020.5127534767095 2 511.26373291015625 MULTI HCD FTMS 0 0 0 18410 161312.375 0.49139903469811064 1 -0.03607940673828125 5 Unmodified _FLDGNELTL_ ENSG00000213719|ENST00000375784|CLIC1 76.82478488871298 0.006879825292024087 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{I|L}T{I|L} 9 0 + 57.514 0 0 5.6358 5.6358 91.482 0 0 0 4.762036441594191 36.60650842086838 4.762036441594191 27.77433463803845 0 1.9291746928241125 0 0.3054621874040891 0.805462187404089 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG]E{I|L}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NP]{[DS]|[MA]|[CV]|TT}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[NG][{I|L}T]E{I|L};[KA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C[VP]{M(Oxidation (M))|F}{I|L};[KA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[KA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]E{I|L} 5.6358;2.9142;2.5929;1.4405;1.0942;0.92693 +;-;-;-;-;- + 1449 NaN NaN 157416.8 NaN 14627 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18416 77.085 NaN 506460 35 0 123240 0.261 + 6506 FPIPLINRL 9 66 541.8397245325526 1081.6648961319052 2 541.83984375 MULTI HCD FTMS 0 0 0 18410 145979.453125 0.372287999880137 5 -0.14322662353515625 6 Unmodified _FPIPLINRL_ ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 34.10243960390752 0.09241788333544565 2 {I|L}M{I|L}P 4 7 54.412 0 0 5.0304 0 0 0 624.3833101861936 624.3833101861936 38.21456278567766 0 0 0 0 1 1.6989700043360187 0 0 {I|L}M{I|L}P 5.0304 - 58 + NaN NaN 171822.6 NaN 14628 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18417 77.088 NaN 465710 35 0 31125 0.261 + 2760 DYARVPNSNPP 11 76 615.2971797819905 1228.579806630781 2 615.296875 MULTI HCD FTMS 0 0 0 18410 109147.0625 0.8634695907284287 -3 0.07173919677734375 7 Unmodified _DYARVPNSNPP_ ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000102316|Q9UNF1-2|MAGED2 12.240655878213236 0.35042917576941135 2 [YN]AWVYYH 8 8 48.59 0 0 3.955 0 0 0 129.0828721177435 129.0828721177435 3.518010100282858 0 0 0 0 0 1.6989700043360187 0 0.9027084789088669 [YN]AWVYYH 3.955 - 731 NaN NaN 160778.7 NaN 14629 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18418 77.092 NaN 181390 35 0 30269 0.261 -1 MPLSEDFVWM 10 51 643.7742684106798 NaN 0 643.775390625 PEAK HCD FTMS 0 0 0 18410 51122.9375 0.48056748026410245 -3 0.07173919677734375 8 2 Oxidation (M) _M(Oxidation (M))PLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 14.838274106304384 0.3224471714378502 2 WVHH 4 -1 23.66 0 0 1.8405 0 0 165.04154109116627 558.1991060846311 723.2406471757974 0 0 0 0 0 0.9247425010840047 0 0 0 WVHH 1.8405 - 39 + NaN NaN 121501.2 NaN 14630 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18419 77.095 NaN 140300 35 0 13991 0.264 -1 LYKTAVIICNY 11 58 453.24428531663995 1356.7110265501199 3 453.2449645996094 MULTI HCD FTMS 0 0 0 18410 41877.37109375 0.40566002181207306 -2 0.04563140869140625 9 Carbamidomethyl (C) _LYKTAVIIC(Carbamidomethyl (C))NY_ ENST00000482826.1_1_2:55795287-55800821:-|nuORF 6.234356020891411 0.3915788988406848 2 [Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}M 5 -1 12.192 0 0 0.89861 0 0 0 719.3755522671698 719.3755522671698 0.5977185236079663 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}M 0.89861 - 48 NaN NaN 106231 NaN 14631 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18420 77.098 NaN 258670 35 0 24477 0.261 + -1 QRFTKHCVDC 10 63 450.87306750284085 1349.5973731087226 3 450.873046875 MULTI HCD FTMS 0 0 0 18410 55831.015625 0.8938125943631061 1 -0.03607940673828125 10 2 Carbamidomethyl (C) _QRFTKHC(Carbamidomethyl (C))VDC(Carbamidomethyl (C))_ REV__ENSG00000198146|ENST00000356321|ZNF770;REV__ZNF770|p.L67V|1|0.26|ENSG00000198146|chr15:34983236-34983236|G/C|missense_variant 3.5870582119611467 0.4563168352879256 2 [{I|L}A]{M(Oxidation (M))|F}T[PG]A{I|L} 8 -1 23.887 0 0 1.77 0 0 0 576.1778561954527 576.1778561954527 9.890690719683091 0 0 0 0 0 0 0.3252574989159953 0 [{I|L}A]{M(Oxidation (M))|F}T[PG]A{I|L} 1.77 - 92 NaN NaN 128154.2 NaN 14632 3786 18410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18422 77.103 NaN 1570800 35 0 167270 0.327 + 26800 SYIDLLQRF 9 95 577.8137562564947 1153.6129595797893 2 577.8139038085938 MULTI HCD FTMS 0 0 0 18421 995360.875 0.6875168039503724 2 -0.05525970458984375 1 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 191.38036244623 2.972967745938989E-13 2 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8 2 99.748 0 0 8.6466 0 0 193.07343707411115 0 193.07343707411115 0 83.1938973401629 0 0 0 3.0356668758921828 0 0.3252574989159953 1.4648415687162955 G{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 8.6466 - 1946 + NaN NaN 329752.6 NaN 14633 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18423 77.108 NaN 401140 35 0 17349 0.263 + 12408 KPGKGARAE 9 69 457.2642804947058 912.5140080562117 2 457.264404296875 MULTI HCD FTMS 0 0 0 18421 416872.75 0.5544843226401245 31 -0.730377197265625 2 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 12.474 0 0 1.367 0 0 414.24648248057247 367.19700037174067 781.4434828523131 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.367 - 37 + NaN NaN 156899.6 NaN 14634 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18424 77.111 NaN 1165200 35 0 135320 0.261 + 21448 PWLFDAPKF 9 104 560.7954454929261 1119.576338052652 2 560.79541015625 MULTI HCD FTMS 0 0 0 18421 570317.5625 0.6662992621704777 -5 0.13040924072265625 3 Unmodified _PWLFDAPKF_ ENSG00000149761|ENST00000279206|NUDT22;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;nc|ENSG00000149761|Q9BRQ3-3|NUDT22 129.77232118876745 0.0006187813247758304 2 PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F} 9 0 + 117.73 0 0 10.516 10.516 97.158 0 0 0 93.5395433018221 16.478174818886373 16.478174818886373 18.51924961490299 0 3.048455006504028 1.6989700043360187 0.5138793319624578 0.555462187404089 + + PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}D[KP]A{M(Oxidation (M))|F};P{[DA]|[EG]}{I|L}[W{M(Oxidation (M))|F}]PK{M(Oxidation (M))|F};P{[DA]|[EG]}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}WK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}[TP]{[NV]|[RG]}{M(Oxidation (M))|F};[WP][VP]YSPK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}[PG]E;[WP]{I|L}{M(Oxidation (M))|F}[Y{I|L}][PA]N;P{[{M(Oxidation (M))|F}D]|MM}[W{I|L}]APK{M(Oxidation (M))|F} 10.516;8.8615;8.1453;5.1702;4.9286;4.5266;4.3112;4.1363;3.9632;3.876 +;+;-;-;-;-;-;-;-;- + 1874 + NaN NaN 275360.1 NaN 14635 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18425 77.114 NaN 827200 35 0 65541 0.261 + -1 CETNDNFLL 9 90 563.2490478537982 1124.4835427743963 2 563.24951171875 MULTI HCD FTMS 0 0 0 18421 290863.71875 0.708944032303753 -5 0.13040924072265625 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))ETNDNFLL_ REV__ENSG00000012223|ENST00000231751|LTF;REV__nc|ENSG00000012223|P02788-2|LTF 19.256988751693697 0.19398022840297344 2 {[{M(Oxidation (M))|F}C]|[YS]}A[YT]YGPG{M(Oxidation (M))|F} 10 -1 + 45.851 0 0 4.0776 4.0776 84.588 0 0 0 12.804811859767966 2.681306849656849 2.681306849656849 8.52182518111362 0 1.1237125054200234 1.0969100130080565 0 0 {[{M(Oxidation (M))|F}C]|[YS]}A[YT]YGPG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}A[YT]Y[NP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AD[{M(Oxidation (M))|F}T][VP][EP];{[{M(Oxidation (M))|F}C]|[YS]}AD[{I|L}T][HS][MT];[YR][C(Carbamidomethyl (C))H]A{[QS]|[NT]}G{M(Oxidation (M))|F} 4.0776;3.3197;2.1474;1.5461;0.026734 -;-;-;-;- 329 + NaN NaN 219379 NaN 14636 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18426 77.118 NaN 389600 35 0 49963 0.261 -1 KMKFSNEVF 9 71 573.286554001384 1144.558555069568 2 573.286865234375 MULTI HCD FTMS 0 0 0 18421 299286.5625 0.28472904277442046 -7 0.18614959716796875 5 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 19.256988751693697 0.19398022840297344 2 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 64.651 0 0 5.6486 0 0 177.04304701972814 0 177.04304701972814 0 50.671758430172375 0 0 0 2.7302046884880937 0 0.6861818737241735 0.28872548999643577 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.6486 - 415 NaN NaN 157627.1 NaN 14637 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18427 77.121 NaN 514200 35 0 63362 0.261 -1 CDKYNLIF 8 74 536.7607522677655 1071.506951602331 2 536.7614135742188 MULTI HCD FTMS 0 0 0 18421 89725.1640625 0.7548780936681272 1 -0.029327392578125 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))DKYNLIF_ ENSG00000172469|ENST00000358812|MANEA 28.486842064014134 0.3788298654084067 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 39.253 0 0 3.6633 0 0 680.258889991896 0 680.258889991896 0 33.767959391884546 0 0 0 1.305462187404089 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 3.6633 + + 81 NaN NaN 165810.3 NaN 14638 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18428 77.124 NaN 2716200 35 0 200570 0.261 + 7431 FVSPFLAW 8 109 483.75790121596066 965.5012494987213 2 483.7579650878906 MULTI HCD FTMS 0 0 0 18421 142141.515625 0.2718354482199895 -10 0.274658203125 7 Unmodified _FVSPFLAW_ REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF 49.66892048692302 0.12981580074710167 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPY 7 -1 67.062 0 0 6.9458 0 0 0 125.07207538413151 125.07207538413151 4.254150580774478 0 0 0 0 1.8882104921644451 1.3979400086720375 0.6989700043360187 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPY 6.9458 - 7076 NaN NaN 503546.5 NaN 14639 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18429 77.128 NaN 228230 35 0 21084 0.261 + 11255 IYLNITNTL 9 59 532.8031114799462 NaN 0 532.8031616210938 PEAK HCD FTMS 0 0 0 18421 65626.2421875 1 0 0 8 Unmodified _IYLNITNTL_ ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF 22.736283301280096 0.1690317064107932 2 {I|L}TTQ{M(Oxidation (M))|F} 5 7 21.198 0 0 1.993 0 0 132.062204070399 338.2081535301045 470.2703576005035 0 0 0 0 0 0.5 0 0 0 {I|L}TTQ{M(Oxidation (M))|F} 1.993 - 54 + NaN NaN 122811.4 NaN 14640 3787 18421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18431 77.132 NaN 3275000 35 0 337990 0.327 + 13561 KYPENFFLL 9 108 585.8131605635726 1169.6117681939452 2 585.8135986328125 MULTI HCD FTMS 0 0 0 18430 3433827.25 0.01745508971899816 63 -1.641998291015625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 89.731 0 0 7.6719 7.6719 90.151 0 0 0 7.964627740862099 16.478174818886373 7.964627740862099 7.964627740862099 0 2.586696871556164 0 0.2614393726401688 1.9188265215345564 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YV][PS]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.6719;6.9909;6.8846;6.5681;6.5303;6.2036;5.9899;5.9705;5.8872;5.8831 +;-;-;-;-;-;-;-;-;- + 5860 NaN NaN 457415.6 NaN 14641 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18432 77.137 NaN 3021400 35 0 448010 0.26 + 26667 SYADQMFLL 9 103 552.2575729466772 1102.5005929601543 2 552.2579956054688 MULTI HCD FTMS 0 0 0 18430 3251633 1 0 0 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 129.77232118876745 0.0006187813247758304 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 96.736 0 0 8.7742 8.7742 95.973 0 0 0 4.762036441594191 60.906658482741484 4.762036441594191 20.00508444608478 0 2.25 0 1.5356668758921828 1.079689690656103 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{I|L}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}QDAYS;{[{M(Oxidation (M))|F}C]|[YS]}A[TA]{NN|[MP]|[D{I|L}]|[EV]}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA]{NN|[MP]|[D{I|L}]|[EV]}C{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA]{NN|[MP]|[D{I|L}]|[EV]}YS{I|L} 8.7742;6.9597;6.6455;5.1763;4.5966;2.8133;2.0505;2.0461;1.7854;1.7511 +;-;-;-;-;-;-;-;-;- + 2188 NaN NaN 548944.3 NaN 14642 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18433 77.14 NaN 806690 35 0 115760 0.261 + 15823 LPIDVTEGEVI 11 92 592.8239777660381 1183.633402598876 2 592.82421875 MULTI HCD FTMS 0 0 0 18430 114975.828125 0.10148555612095385 7 -0.12628173828125 3 Unmodified _LPIDVTEGEVI_ ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1 10.799506525563784 0.36298595732910816 2 WV{I|L} 3 9 25.93 0 0 2.1907 0 0 767.40922743965 0 767.40922743965 0 18.940162615404077 0 0 0 0.4247425010840047 0 0 0 WV{I|L} 2.1907 - 167 NaN NaN 218704.9 NaN 14643 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18434 77.144 NaN 622510 35 0 45901 0.261 + 29280 TYLPQTYII 9 91 556.3051429781832 1110.5957330231663 2 556.3056030273438 MULTI HCD FTMS 0 0 0 18430 306520.09375 1 0 0 4 Unmodified _TYLPQTYII_ ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C 74.19965305603844 0.007729275404663812 2 [YT]{I|L}PQTY{I|L}{I|L} 9 0 + 69.623 0 0 6.269 6.269 90.024 0 0 0 10.401442972186459 11.07693594592169 10.401442972186459 10.401442972186459 0 1.7914478256039672 1.2218487496163564 0.5387254899964358 0 + + [YT]{I|L}PQTY{I|L}{I|L};[Y{I|L}]TPQTY{I|L}{I|L};[YT]{I|L}P[AG]TY{I|L}{I|L};[YT]{I|L}PQ{I|L}[YT]{I|L};[Y{I|L}]TPQ{I|L}[YT]{I|L};[YT]{I|L}PQ{I|L}{I|L}[YT];[Y{I|L}]TPQ{I|L}{I|L}[YT] 6.269;5.3324;4.4425;4.4027;3.4661;3.2423;2.3057 +;-;-;-;-;-;- + 619 NaN NaN 184933.4 NaN 14644 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18435 77.147 NaN 216480 35 0 23786 0.261 + 33301 YFQISPCDEF 10 50 624.767361472308 1247.520170011416 2 624.7669067382812 MULTI HCD FTMS 0 0 0 18430 156826.46875 0.44347916147309985 3 -0.07781982421875 5 Unmodified _YFQISPCDEF_ REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF 15.248480904072842 0.3684828712757339 2 DVQ{[DS]|[MA]|[CV]|TT}DE{M(Oxidation (M))|F} 8 -1 52.696 0 0 4.224 0 0 294.12190444160314 0 294.12190444160314 0 26.49797211252192 0 0 0 0.5 0 0.805462187404089 0 DVQ{[DS]|[MA]|[CV]|TT}DE{M(Oxidation (M))|F} 4.224 - 210 NaN NaN 128137.9 NaN 14645 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18436 77.15 NaN 511700 35 0 188090 0.261 -1 LYPQFMFHL 9 66 606.2995372156983 1210.5845214981964 2 606.2998657226562 MULTI HCD FTMS 0 0 0 18430 228600.421875 0.7029798074343206 -3 0.09154510498046875 6 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 16.942295170755138 0.21397866736869717 2 [Y{I|L}]PQ 4 -1 36.669 0 0 3.029 0 0 0 706.3032320611936 706.3032320611936 15.24227503252014 0 0 0 0 0.6747425010840047 2 0 0 [Y{I|L}]PQ 3.029 + + 57 + NaN NaN 177266.3 NaN 14646 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18437 77.154 NaN 262970 35 0 17167 0.263 -1 0 77 465.77746469421976 929.5403764552395 2 465.77789306640625 MULTI HCD FTMS 0 0 0 18430 153731.9375 0.3199858409142679 -4 0.1110382080078125 7 NaN NaN 2 Q 1 -1 5.4846 0 0 0.59003 0 0 431.2720310429754 367.19611536197505 798.4681464049504 0 0 0 0 0 0 0 0 0 Q 0.59003 - 21 + NaN NaN 124647.1 NaN 14647 3788 18430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18439 77.158 NaN 57935000 35 0 10186000 0.326 + 13798 KYPSPFFVF 9 91 566.2972883717671 1130.580023810334 2 566.2978515625 MULTI HCD FTMS 0 0 0 18438 49519768 0.4454881839283231 -6 0.16307830810546875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 126.56589448801843 0.0008132384440316759 2 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 96.353 0 0 8.5224 8.5224 90.582 0 0 0 5.950980400142569 16.478174818886373 5.950980400142569 5.950980400142569 0 2.8494850021680094 0 1.3441876774005248 0.9802046884880937 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.5224;7.9961;6.9937;6.8616;6.5728;6.4674;6.3095;5.8649;5.5986;5.3329 +;-;-;-;-;-;-;-;-;- + 6054 NaN NaN 833888.6 NaN 14648 3789 18438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18440 77.163 NaN 1374400 35 0 386210 0.261 + 7032 FPYSYEVAL 9 77 544.7687251189523 1087.5228973047044 2 544.7688598632812 MULTI HCD FTMS 0 0 0 18438 1234655.5 0.5027475080841248 -3 0.091339111328125 2 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 74.42276476219924 0.007657080072768255 2 NEVA{I|L} 5 5 56.058 0 0 5.1546 0 0 543.2471790998062 0 543.2471790998062 0 41.63303128443836 0 0 0 1.5 0 0.8494850021680094 0 NEVA{I|L} 5.1546 - 245 NaN NaN 306157.8 NaN 14649 3789 18438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18441 77.166 NaN 116500 35 0 7297.9 0.261 -1 MLLFMVGNL 9 46 527.2750244140625 NaN 0 527.2750244140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _MLLFM(Oxidation (M))VGNL_ ENSG00000099822|ENST00000251287|HCN2 5.230669730166228 0.26989974671959066 2 A{I|L} 2 -1 14.138 0 0 1.3445 0 0 586.2759977033219 278.1122225397094 864.3882202430314 0 0 0 0 0 0.7059771852360797 0 0 0 A{I|L} 1.3445 - 8 + NaN NaN 106914.4 NaN 14650 3789 18438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18442 77.17 NaN 368540 35 0 32128 0.261 + 6705 FPPLYEDIM 9 57 570.7674829066474 1139.5204128800947 2 570.7674560546875 MULTI HCD FTMS 0 0 0 18438 45090.46875 0.19167106692038696 -4 0.1174774169921875 4 Oxidation (M) _FPPLYEDIM(Oxidation (M))_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 67.34385681178166 0.00994769994983633 2 YED{I|L}{M(Oxidation (M))|F} 5 4 68.588 0 0 6.0191 0 0 454.2564290329029 0 454.2564290329029 0 57.61922997584469 0 0 0 2.4247425010840047 0 0.6382104921644451 0 + YED{I|L}{M(Oxidation (M))|F} 6.0191 + + 102 + NaN NaN 148453.5 NaN 14651 3789 18438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18443 77.173 NaN 153860 35 0 33970 0.261 + 22197 QLLPPLFF 8 43 487.7909240722656 NaN 0 487.7909240722656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _QLLPPLFF_ ENSG00000113520|ENST00000231449|IL4;nc|ENSG00000113520|P05112-2|IL4 2.8892196856762586 0.38822285293237185 2 {I|L} 1 7 5.4846 0 0 0.56335 0 0 503.3868404279313 354.07663904361567 857.463479471547 0 0 0 0 0 0 0 0 0 + {I|L} 0.56335 + + 1 + NaN NaN 110939.6 NaN 14652 3789 18438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18444 77.176 NaN 236940 35 0 25539 0.261 + 2118 DFITFKTSFV 10 68 602.8151452887575 NaN 0 602.8150024414062 PEAK HCD FTMS 0 0 0 18438 40466.98828125 0.44874774435963205 1 -0.0226287841796875 6 Unmodified _DFITFKTSFV_ REV__ENSG00000104804|ENST00000221399|TULP2 6.2057823575117 0.3348729994311477 2 C(Carbamidomethyl (C)) 1 -1 7.0116 0 0 0.58255 0 0 264.14132465779 776.4336925629044 1040.5750172206945 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 0.58255 - 11 + NaN NaN 115282.2 NaN 14653 3789 18438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18446 77.181 NaN 661670 35 0 172090 0.327 + 17254 LYPKTLFLL 9 71 554.344071215102 1106.6735894970038 2 554.3438720703125 MULTI HCD FTMS 0 0 0 18445 402992.21875 0.7971964428625493 5 -0.07772064208984375 1 Unmodified _LYPKTLFLL_ ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.672 0 0 2.5908 0 0 715.4286173100357 0 715.4286173100357 0 20.260847058321687 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.5908 + + 42 NaN NaN 205591.7 NaN 14654 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18447 77.185 NaN 949820 35 0 158260 0.261 + 27838 TCYLYDYPF 9 99 592.7529304453464 1183.4913079574926 2 592.7535400390625 MULTI HCD FTMS 0 0 0 18445 341867.96875 0.3342607375373485 -2 0.04856109619140625 2 Unmodified _TCYLYDYPF_ ENST00000261015.4_1_2:203776439-203776619:-|nuORF 4.3292370932331545 0.3181982124262546 2 KVG{M(Oxidation (M))|F} 4 8 24.157 0 0 2.0411 0 0 734.2651419202862 0 734.2651419202862 0 14.719712763997562 0 0 0 0 0 0 0 KVG{M(Oxidation (M))|F} 2.0411 - 133 NaN NaN 239755.7 NaN 14655 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18448 77.189 NaN 634260 35 0 67219 0.261 + 7478 FVVYDGAVFF 10 82 582.292466181139 1162.570379429078 2 582.7955322265625 MULTI HCD FTMS 0 0 0 18445 228139.640625 0.5064522735091331 -1 0.0226287841796875 3 Unmodified _FVVYDGAVFF_ ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2 21.74664581756881 0.3077012291670537 2 G[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 7 45.411 0 0 3.9061 0 0 266.125780174025 0 266.125780174025 0 32.89303983855447 0 0 0 2.3494850021680094 0 0.6421590589602533 0 G[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.9061 - 166 NaN NaN 195365.1 NaN 14656 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18449 77.192 NaN 492330 35 0 56211 0.261 + 6933 FPVLDANDL 9 70 502.2582205867835 1002.5018882403671 2 502.2589111328125 MULTI HCD FTMS 0 0 0 18445 265121.4375 0.7319218944988222 -1 0.0226287841796875 4 Unmodified _FPVLDANDL_ ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3 99.75527289724121 0.004270341300239591 2 [YT]{I|L}{[HG]|PP}AND{I|L} 9 5 + 70.326 0 0 7.0151 7.0151 86.909 0 0 0 2.9782403511214994 13.601708766328997 2.9782403511214994 2.9782403511214994 0 1.1237125054200234 1.5228787452803376 0.3494850021680094 0.3252574989159953 [YT]{I|L}{[HG]|PP}AND{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L}DAND{I|L};[YT]{I|L}{[QG]|[NA]}PPD{I|L};[YT]{I|L}{[HG]|PP}AGGD{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L}DAGGD{I|L};[{M(Oxidation (M))|F}V]P{I|L}DAND{I|L};[YT]{I|L}TPSP[QP];[{M(Oxidation (M))|F}V]P{I|L}DAGGD{I|L};[YT]{I|L}{[HG]|PP}TS[QP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{I|L}DTS[QP] 7.0151;6.718;6.5463;5.7721;5.475;5.3324;3.4518;3.286;2.9742;2.6771 -;+;-;-;-;-;-;-;-;- + 495 NaN NaN 165216.8 NaN 14657 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18450 77.196 NaN 400700 35 0 86887 0.261 + 6483 FPIPGEPGF 9 42 480.74560057336413 959.4766482135283 2 480.7449035644531 MULTI HCD FTMS 0 0 0 18445 117510.9453125 0.14993944565691802 -11 0.29354095458984375 5 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 70.71552829651908 0.008856681705782516 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 55.851 0 0 5.821 5.821 93.01 0 0 0 5.6424927368725974 45.39381281052492 5.6424927368725974 55.85138771613167 0 2.1237125054200234 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 5.821 + + 170 NaN NaN 143860.1 NaN 14658 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18451 77.199 NaN 638500 35 0 67589 0.261 + 35950 YYVDFFKTL 9 92 598.305847113835 1194.5971412944698 2 598.3048095703125 MULTI HCD FTMS 0 0 0 18445 183924.84375 0.3821152188474324 -7 0.18570709228515625 6 Unmodified _YYVDFFKTL_ ENSG00000132406|ENST00000382753|TMEM128;nc|ENSG00000132406|Q5BJH2-2|TMEM128 84.5221896805406 0.004669506596793478 2 YYVD{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L} 9 0 + 111.01 0 0 9.2926 9.2926 97.818 0 0 0 12.926288272058883 12.926288272058883 12.926288272058883 38.66660094933607 0 3.1237125054200234 2 1.360924374808178 0 + + YYVD{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L};YYP[YT]{M(Oxidation (M))|F}KT{I|L};[Y{I|L}]{M(Oxidation (M))|F}[YT]{M(Oxidation (M))|F}KT{I|L};YT[Y{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L};YYV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ]{I|L}{I|L};YYPR{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L};YYP{I|L}{[DA]|[EG]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L};[Y{I|L}]{M(Oxidation (M))|F}{I|L}{[DA]|[EG]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}C]|[YS]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L};M{I|L}D[KQ][YG]D{I|L}{I|L} 9.2926;6.0559;4.9048;4.2379;3.4173;2.8942;2.5478;1.3968;0.62306;0.59215 +;-;-;-;-;-;-;-;-;- + 757 + NaN NaN 192624 NaN 14659 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18452 77.202 NaN 304120 35 0 39895 0.262 + 31407 VYALVVVSY 9 55 506.7893042143033 1011.5640554954066 2 506.788818359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _VYALVVVSY_ ENSG00000198856|ENST00000361564|OSTC;ENST00000510556.1_1_4:109571811-109578607:+|nuORF;nc|ENSG00000198856|Q9NRP0-2|OSTC 36.04419817259434 0.08350412372117409 2 VVVSY 5 4 46.287 0 0 4.5757 0 0 446.25230120028783 0 446.25230120028783 0 33.077008980673206 0 0 0 1.7614393726401687 0 0 0 + VVVSY 4.5757 + + 51 + NaN NaN 126218.6 NaN 14660 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18453 77.206 NaN 215010 35 0 34683 0.261 + 11256 IYLNNIIPRF 10 50 631.8664570615856 NaN 0 631.866455078125 PEAK HCD FTMS 0 0 0 18445 39789.05078125 0.1660065570816632 -4 0.1139678955078125 8 Unmodified _IYLNNIIPRF_ ENSG00000171943|ENST00000367123|SRGAP2C;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B 61.08992128646608 0.04768455834745296 2 {I|L}NN{I|L}{I|L}P 6 4 25.355 0 0 2.0095 0 0 276.1470570710425 318.1573580377563 594.3044151087988 0 0 0 0 0 1.3494850021680094 0 0 0 + {I|L}NN{I|L}{I|L}P 2.0095 + + 80 + NaN NaN 127570.4 NaN 14661 3790 18445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18455 77.21 NaN 768750 35 0 131240 0.327 + 5987 FPDQVAIQL 9 49 515.7819895057114 1029.5494260782227 2 515.7821655273438 MULTI HCD FTMS 0 0 0 18454 825267.375 0.22348813560928515 13 -0.21730804443359375 1 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 38.61474834105838 0.07170385841135779 2 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 7 5 57.796 0 0 5.6137 0 0 242.12642104316564 0 242.12642104316564 0 47.33873864062048 0 0 0 1.9247425010840047 0 0 0 {I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 5.6137 - 113 NaN NaN 205409.1 NaN 14662 3791 18454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18456 77.215 NaN 725600 35 0 110340 0.261 + 28533 TPQFPDMIL 9 78 539.26788511357 1076.5212172939398 2 539.2680053710938 MULTI HCD FTMS 0 0 0 18454 658673.375 0.033813690329027125 53 -1.3611221313476562 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 45.69961567697781 0.039180348357221985 2 VY{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L} 7 5 43.54 0 0 4.0445 0 0 208.0846882550797 0 208.0846882550797 0 19.678549532341933 0 0 0 1.579689690656103 0 0.6139829889124311 0.3054621874040891 VY{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L} 4.0445 - 699 NaN NaN 193070.5 NaN 14663 3791 18454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18457 77.218 NaN 344560 35 0 27101 0.261 + 18011 MLILMTSLAW 10 60 589.8194965983865 NaN 0 589.818603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MLILMTSLAW_ nc|ENSG00000082996|O43567-2|RNF13 3.944395688203298 0.33680843299986807 2 {I|L} 1 9 6.9897 0 0 0.59354 0 0 327.1299639088092 734.3878184572086 1061.5177823660179 0 0 0 0 0 0 0 0 0 + {I|L} 0.59354 + + 22 + NaN NaN 163669.5 NaN 14664 3791 18454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18458 77.221 NaN 297420 35 0 53541 0.264 -1 0 79 404.1881635092436 806.3617740852873 2 404.1883544921875 MULTI HCD FTMS 0 0 0 18454 253191.5625 0.6375761290039288 -10 0.267059326171875 4 NaN NaN 2 E 1 -1 5.4846 0 0 0.68016 0 0 373.20337062024663 301.1008700006469 674.3042406208936 0 0 0 0 0 0 0 0 0 E 0.68016 - 20 + NaN NaN 135046.8 NaN 14665 3791 18454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18460 77.226 NaN 91237 35 0 4792.2 0.411 + 14859 LKIIIIPIIKA 11 56 617.9447021484375 NaN 0 617.9447021484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LKIIIIPIIKA_ ENST00000377142.4_1_20:21494349-21494634:-|nuORF 0 0.34212014346876374 2 {I|L}{I|L}D 3 9 9.0411 0 0 0.73274 0 0 164.32829052558742 725.3558443658811 889.6841348914686 0 0 0 0 0 0 0 0 0 {I|L}{I|L}D 0.73274 - 14 + NaN NaN 112907.2 NaN 14666 3792 18459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18462 77.233 NaN 694050 35 0 67271 0.327 + 21449 PWLFDAPKF 9 94 560.7954454929261 1119.576338052652 2 560.7958374023438 MULTI HCD FTMS 0 0 0 18461 296903.53125 0.34687096595887207 1 -0.01580810546875 1 Unmodified _PWLFDAPKF_ ENSG00000149761|ENST00000279206|NUDT22;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;nc|ENSG00000149761|Q9BRQ3-3|NUDT22 106.94017166704063 0.003441928997083001 2 PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F} 9 0 + 108.9 0 0 9.7271 9.7271 96.654 0 0 0 89.43849255422292 14.09256854528806 14.09256854528806 18.174304145749133 0 3.06295299324845 1.5228787452803376 0.25 0.2742275032520141 + + PW{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}DAPK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}DAKP{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}D[KP]A{M(Oxidation (M))|F};PW{I|L}{M(Oxidation (M))|F}{[NV]|[RG]}PT{M(Oxidation (M))|F};{M(Oxidation (M))|F}P[W{I|L}]DAPK{M(Oxidation (M))|F};P{M(Oxidation (M))|F}[W{I|L}]DAPK{M(Oxidation (M))|F};P{[DA]|[EG]}{I|L}{M(Oxidation (M))|F}WPK{M(Oxidation (M))|F};PW[{M(Oxidation (M))|F}T][TP]PK{M(Oxidation (M))|F};[WP]{I|L}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}SP{M(Oxidation (M))|F} 9.7271;8.1038;7.5547;7.2039;6.6995;5.5363;5.4258;4.79;4.7125;4.6596 +;+;-;-;-;-;-;-;-;- + 1948 + NaN NaN 207409.7 NaN 14667 3793 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18463 77.238 NaN 568810 35 0 97713 0.261 + 26802 SYIDLLSSANA 11 86 577.2884568881587 NaN 0 577.2882690429688 PEAK HCD FTMS 0 0 0 18461 267729.21875 0.3444387399832431 1 -0.01580810546875 2 Unmodified _SYIDLLSSANA_ REV__ENSG00000166197|ENST00000605788|NOLC1;REV__nc|ENSG00000166197|Q14978-2|NOLC1;REV__nc|ENSG00000166197|Q14978-3|NOLC1 26.268140514670165 0.2078196763510663 2 {I|L}D{I|L}{I|L}QR 6 -1 30.425 0 0 2.6397 0 0 249.04418564956114 162.05628381900627 411.10046946856744 0 0 0 0 0 0.555462187404089 0 0 0 {I|L}D{I|L}{I|L}QR 2.6397 - 292 + NaN NaN 178273.9 NaN 14668 3793 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18464 77.241 NaN 711520 35 0 115820 0.264 -1 0 68 413.1934580881088 824.3723632430176 2 413.1934814453125 MULTI HCD FTMS 0 0 0 18461 431595.5 0.4723992510325119 -8 0.19271087646484375 3 NaN NaN 2 {I|L} 1 -1 4.6041 0 0 0.5585 0 0 120.05304058852387 588.2117124776798 708.2647530662038 0 0 0 0 0 0 0 0 0 {I|L} 0.5585 - 23 + NaN NaN 197654.1 NaN 14669 3793 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18465 77.245 NaN 327550 35 0 19128 0.261 + 12409 KPGKGARAE 9 74 457.2642804947058 912.5140080562117 2 457.2642517089844 MULTI HCD FTMS 0 0 0 18461 396986.59375 0.5280336566318595 37 -0.9477005004882812 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 13.539 0 0 1.4837 0 0 414.2464432142179 367.19753575568956 781.4439789699074 0 0 0 0 0 0.805462187404089 0 0 0 Q 1.4837 - 42 + NaN NaN 140408.5 NaN 14670 3793 18461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18467 77.249 NaN 919430 35 0 120590 0.327 -1 KMKFSNEVF 9 76 573.286554001384 1144.558555069568 2 573.7880249023438 MULTI HCD FTMS 0 0 0 18466 328499.9375 0.5290496742106252 -7 0.14630126953125 1 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 25.399314129420986 0.14091189997036632 2 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 77.23 0 0 6.7476 0 0 177.04248244453282 0 177.04248244453282 0 60.062893943202624 0 0 0 2.774227503252014 0 1.086696871556164 0.3494850021680094 KPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.7476 - 616 NaN NaN 226442.3 NaN 14671 3794 18466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18468 77.254 NaN 6281300 35 0 384750 0.261 + 7432 FVSPFLAW 8 128 483.75790121596066 965.5012494987213 2 484.2595520019531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FVSPFLAW_ REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF 49.66892048692302 0.12981580074710167 2 [PS]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}PY 7 -1 63.862 0 0 6.6144 0 0 0 125.07185952111139 125.07185952111139 17.776512060345418 0 0 0 0 2.022932375126069 1.6989700043360187 1.341129063296272 0 [PS]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}PY 6.6144 - 5760 NaN NaN 1040473 NaN 14672 3794 18466 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18470 77.259 NaN 3092100 35 0 304310 0.326 + 13562 KYPENFFLL 9 121 585.8131605635726 1169.6117681939452 2 585.8135986328125 MULTI HCD FTMS 0 0 0 18469 3246447.5 0.016502586838204304 70 -1.925811767578125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 88.551 0 0 7.571 7.571 89.904 0 0 0 7.870156338638594 16.478174818886373 7.870156338638594 7.870156338638594 0 2.610924374808178 0 0.2742275032520141 1.8307808920067157 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.571;6.8981;6.7837;6.5078;6.1151;6.1108;5.8873;5.8349;5.7805;5.7205 +;-;-;-;-;-;-;-;-;- + 9095 NaN NaN 557219.3 NaN 14673 3795 18469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18471 77.263 NaN 2393600 35 0 305520 0.261 + 26668 SYADQMFLL 9 96 552.2575729466772 1102.5005929601543 2 552.2579345703125 MULTI HCD FTMS 0 0 0 18469 2454763.75 0.754932598482055 7 -0.11920166015625 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 118.0683919894846 0.0016252157255221692 2 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 100.3 0 0 9.0977 9.0977 95.296 0 0 0 13.310632682919575 16.478174818886373 13.310632682919575 13.310632682919575 0 1.8494850021680094 1.5228787452803376 1.1237125054200234 0.9757724967479859 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]S{I|L}C(Carbamidomethyl (C))PYS{I|L};[YT]S{I|L}[CG]PYS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}T{I|L}C(Carbamidomethyl (C))PYS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F}E{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[MT]VVA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}AD[MT][{I|L}V]G{M(Oxidation (M))|F} 9.0977;7.8904;7.3774;6.1701;3.435;2.5998;2.2277;2.2173;2.0716;1.7985 -;+;-;-;-;-;-;-;-;- + 2568 NaN NaN 459400 NaN 14674 3795 18469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18472 77.266 NaN 658350 35 0 54796 0.261 + 35951 YYVDFFKTL 9 84 598.305847113835 1194.5971412944698 2 598.8078002929688 MULTI HCD FTMS 0 0 0 18469 723178.25 1 0 0 3 Unmodified _YYVDFFKTL_ ENSG00000132406|ENST00000382753|TMEM128;nc|ENSG00000132406|Q5BJH2-2|TMEM128 90.13494162714682 0.004522430935000059 2 YYVD{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L} 9 0 + 98.795 0 0 8.2702 8.2702 96.524 0 0 0 6.930417081766564 6.930417081766564 6.930417081766564 36.866654986684736 0 2.973197507588033 2 1.3199601741485107 0 + + YYVD{M(Oxidation (M))|F}{M(Oxidation (M))|F}KT{I|L};[Y{I|L}]{[CP]|[EA]}TQEKT{I|L};[Y{I|L}]{[CP]|[EA]}T[AG]EKT{I|L};YYVD[{I|L}P]{[CP]|[EA]}{I|L}{I|L};[Y{I|L}][PA]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EKT{I|L} 8.2702;5.1841;4.4169;3.8125;3.5584 +;-;-;-;- + 476 + NaN NaN 214713.9 NaN 14675 3795 18469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18473 77.27 NaN 897510 35 0 104670 0.261 + 26801 SYIDLLQRF 9 93 577.8137562564947 1153.6129595797893 2 577.8145141601562 MULTI HCD FTMS 0 0 0 18469 189193.140625 0.13067970284830951 10 -0.177764892578125 4 Unmodified _SYIDLLQRF_ ENSG00000127580|ENST00000293883|WDR24 65.47368725323818 0.010552856507075443 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F} 9 0 + 55.574 0 0 4.8174 4.8174 85.687 0 0 0 4.137342758552691 44.14184987823128 4.137342758552691 9.018637558036673 0 2.392159058960253 0 0.5891368308784531 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}{I|L}QR{M(Oxidation (M))|F};[Y{I|L}]SD{I|L}{I|L}QR{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}{I|L}[AG]R{M(Oxidation (M))|F};[Y{I|L}]SD{I|L}{I|L}[AG]R{M(Oxidation (M))|F};[YK]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}RQR{M(Oxidation (M))|F};[YK]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}R[AG]R{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{I|L}RY[KP];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[Y{I|L}]SD{I|L}RY[KP] 4.8174;4.0356;4.0191;3.2374;3.0596;2.2568;1.0099;0.73101;0.22817 +;-;-;-;-;-;-;-;- + 1454 NaN NaN 245212.4 NaN 14676 3795 18469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18475 77.274 NaN 305030 35 0 217800 0.411 + 17730 MDCSESDH 8 57 462.1466329432951 NaN 0 462.1465759277344 PEAK HCD FTMS 0 0 0 18474 452767.625 0.8618247894179079 1 -0.0074005126953125 1 Unmodified _MDCSESDH_ ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;GALNT10|p.F574V|1|0.07|ENSG00000164574|chr5:154416880-154416880|T/G|missense_variant;nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000164574|Q86SR1-4|GALNT10 0.7936320650641473 0.38822285293237185 2 PD 2 7 7.6908 0 0 0.83389 0 0 147.85284748833539 559.3248385065061 707.1776859948416 0 0 0 0 0 0 0 0.4247425010840047 0 PD 0.83389 - 28 + NaN NaN 195171.2 NaN 14677 3796 18474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18477 77.282 NaN 65433000 35 0 11381000 0.327 + 13799 KYPSPFFVF 9 80 566.2972883717671 1130.580023810334 2 566.2979736328125 MULTI HCD FTMS 0 0 0 18476 85808328 0.7719461893812968 2 -0.0317230224609375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 139.13845188893973 5.0762478717762276E-05 2 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 100.52 0 0 8.8907 8.8907 94.941 0 0 0 12.940680443502757 14.827796776480469 12.940680443502757 12.940680443502757 0 2.774227503252014 0 1.3441876774005248 1.3169015600442577 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 8.8907;7.7461;7.5792;6.8266;6.6116;6.4346;6.38;5.9669;5.6414;5.5151 +;-;-;-;-;-;-;-;-;- + 4813 NaN NaN 620354.2 NaN 14678 3797 18476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18478 77.286 NaN 845570 35 0 247080 0.261 + 7033 FPYSYEVAL 9 58 544.7687251189523 1087.5228973047044 2 544.7689208984375 MULTI HCD FTMS 0 0 0 18476 828126.875 0.3372104386881551 5 -0.0960540771484375 2 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 57.47134341890925 0.0211188941628804 2 EVA{I|L} 4 5 51.186 0 0 4.7066 0 0 657.2805610352677 0 657.2805610352677 0 38.42141542771227 0 0 0 1.5 0 0.4247425010840047 0 + EVA{I|L} 4.7066 + + 61 NaN NaN 227724.2 NaN 14679 3797 18476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18479 77.29 NaN 589670 35 0 55926 0.261 + -1 SYLPLMCLL 9 86 563.2867934596376 1124.559033986075 2 563.2864990234375 MULTI HCD FTMS 0 0 0 18476 143444.953125 0.39787399837824927 5 -0.0960540771484375 3 Carbamidomethyl (C),Oxidation (M) _SYLPLM(Oxidation (M))C(Carbamidomethyl (C))LL_ REV__ENST00000394607.7_1_4:111026722-111119460:-|nuORF 15.847184025352803 0.2234401846867398 2 {[{M(Oxidation (M))|F}C]|[YS]}AD[{M(Oxidation (M))|F}T][VP]{I|L}{I|L} 10 -1 + 27.152 0 0 2.4145 2.4145 87.988 0 0 0 1.935749724493121 10.241049764686135 1.935749724493121 27.15227486541373 0 0.9247425010840047 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}AD[{M(Oxidation (M))|F}T][VP]{I|L}{I|L} 2.4145 - 162 NaN NaN 189933.2 NaN 14680 3797 18476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18480 77.293 NaN 182760 35 0 20152 0.262 -1 0 65 465.77746469421976 929.5403764552395 2 465.776611328125 MULTI HCD FTMS 0 0 0 18476 212983.71875 0.4433156535561564 5 -0.0960540771484375 4 NaN NaN 2 V 1 -1 2.7642 0 0 0.29737 0 0 603.3466641523083 224.09800134830314 827.4446655006114 0 0 0 0 0 0 0 0 0 V 0.29737 - 30 + NaN NaN 131359.4 NaN 14681 3797 18476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18481 77.296 NaN 541990 35 0 183640 0.261 -1 LYPQFMFHL 9 63 606.2995372156983 1210.5845214981964 2 606.2998657226562 MULTI HCD FTMS 0 0 0 18476 149861.015625 0.460844590932469 5 -0.0960540771484375 5 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 13.50788311687929 0.24365122550260465 2 [Y{I|L}][QP]{M(Oxidation (M))|F} 5 -1 25.726 0 0 2.1251 0 0 0 559.2344454400999 559.2344454400999 18.735899786366232 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}][QP]{M(Oxidation (M))|F} 2.1251 + + 30 + NaN NaN 194148.4 NaN 14682 3797 18476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18482 77.3 NaN 351380 35 0 30993 0.261 + 19840 NYAWVYYHL 9 68 614.7934288768589 1227.5723048205177 2 614.7936401367188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 60.07390631473393 0.0174780869009295 2 [YN]AWVYYH{I|L} 9 0 + 74.874 0 0 6.0993 6.0993 92.108 0 0 0 1.9639501517606561 1.9639501517606561 1.9639501517606561 25.859790849763655 0 2.5994850021680094 1.6989700043360187 0 0.3807196863200844 + + [YN]AWVYYH{I|L};[YN]A{[DA]|[EG]}V[C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}{I|L};[YN]A[HD][VP]YH{I|L};[YN][WH][VS]Y{M(Oxidation (M))|F}{I|L} 6.0993;3.9928;2.7224;1.2348 +;-;-;- + 197 NaN NaN 146861.8 NaN 14683 3797 18476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18484 77.304 NaN 610480 35 0 74511 0.327 + 6261 FPFDVAVKF 9 64 535.2893557146402 1068.5641584960804 2 535.2893676757812 MULTI HCD FTMS 0 0 0 18483 483323.0625 0.4475267928603299 -3 0.045562744140625 1 Unmodified _FPFDVAVKF_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 106.94017166704063 0.003441928997083001 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F} 9 0 + 103.41 0 0 9.6779 9.6779 91.597 0 0 0 92.95670675372754 16.478174818886373 16.478174818886373 5.568109453757657 0 3.079689690656103 0 0.6989700043360187 0.3054621874040891 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}S[TP]VK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VP{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}D[K{I|L}][VG]{M(Oxidation (M))|F} 9.6779;9.1568;8.9706;7.6575;6.8183;6.5366;5.3854;5.2236;4.6601;4.5462 +;+;-;-;-;-;-;-;-;- + 531 + NaN NaN 186262.5 NaN 14684 3798 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18485 77.309 NaN 207990 35 0 15168 0.261 + 29167 TYIQDAFQL 9 64 549.776943881864 NaN 0 549.7769165039062 PEAK HCD FTMS 0 0 0 18483 58227.984375 0.23092392783798824 5 -0.08637237548828125 2 Unmodified _TYIQDAFQL_ ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1 53.31671820480216 0.03794897575274257 2 Q{M(Oxidation (M))|F}ADQ{I|L} 6 5 48.919 0 0 4.4572 0 0 131.0955749544725 261.08664880924067 392.1822237637132 0 0 0 0 0 2.2059771852360797 0 0.3494850021680094 0 Q{M(Oxidation (M))|F}ADQ{I|L} 4.4572 - 240 + NaN NaN 116678.1 NaN 14685 3798 18483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18487 77.313 NaN 897800 35 0 150450 0.327 -1 HPEMRGEEPS 10 102 592.7529304453464 1183.4913079574926 2 592.7532348632812 MULTI HCD FTMS 0 0 0 18486 305216.625 0.2984249578987803 7 -0.16197967529296875 1 Oxidation (M) _HPEM(Oxidation (M))RGEEPS_ ENST00000595068.5_1_19:35761993-35769966:+|nuORF;ENST00000599471.5_1_19:35761650-35769699:+|nuORF 5.731851221503515 0.44496410492002586 2 KVG{M(Oxidation (M))|F} 4 -1 24.412 0 0 2.0627 0 0 734.2620716779312 0 734.2620716779312 0 11.340481736553157 0 0 0 0 0 0 0 KVG{M(Oxidation (M))|F} 2.0627 - 153 NaN NaN 240583.4 NaN 14686 3799 18486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18488 77.318 NaN 1024100 35 0 89508 0.261 + 961 AYELTQYYF 9 99 599.2769491253474 1196.5393453174947 2 599.2770385742188 MULTI HCD FTMS 0 0 0 18486 488180.75 0.5854591405556849 -2 0.0317230224609375 2 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 96.36657018975838 0.004359138328518304 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F} 9 0 + 98.532 0 0 8.2348 8.2348 93.858 0 0 0 20.87128018967597 67.43984888652717 20.87128018967597 12.09544243948811 0 2.5114393726401687 1.5228787452803376 1.4489700043360187 0.28872548999643577 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQY[VP]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]EQYY{M(Oxidation (M))|F};[YE]A{I|L}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}G[TA]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQ[{I|L}T]YY{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]Y[VP]N;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[WR]YY{M(Oxidation (M))|F} 8.2348;7.2239;6.8586;6.2925;6.1407;6.0523;5.8768;5.8577;5.8514;5.7532 +;-;-;-;-;-;-;-;-;- + 3623 NaN NaN 263305.6 NaN 14687 3799 18486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18489 77.321 NaN 604560 35 0 67148 0.261 + -1 FISSFQFVF 9 75 582.292466181139 1162.570379429078 2 582.7937622070312 MULTI HCD FTMS 0 0 0 18486 303818.4375 0.6744533215899444 8 -0.18807220458984375 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FISSFQFVF_ REV__ENST00000284617.6_1_1:229460388-229460436:-|nuORF 32.30548876998284 0.10066689432505688 2 T[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 55.085 0 0 4.7382 0 0 222.10011489082189 0 222.10011489082189 0 41.89748932436905 0 0 0 2.305462187404089 0 0.9634679910804405 0 T[PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.7382 - 213 NaN NaN 184739.9 NaN 14688 3799 18486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18490 77.325 NaN 660050 35 0 89147 0.261 -1 SYAASGMCLLF 11 80 589.7642475890005 1177.513942244801 2 589.7650756835938 MULTI HCD FTMS 0 0 0 18486 300142.03125 0.191213018088394 -6 0.079986572265625 4 Oxidation (M) _SYAASGM(Oxidation (M))CLLF_ ENSG00000132164|ENST00000254488|SLC6A11 29.081581746732265 0.20726811077697932 2 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F} 9 -1 + 50.911 0 0 4.3236 4.3236 90.331 0 0 0 1.6260367933891544 24.968480885185265 1.6260367933891544 43.08159703347442 0 1.305462187404089 1.2218487496163564 0.7302046884880937 0.6505149978319906 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F};[{I|L}T][C(Carbamidomethyl (C))N]YY{I|L}[MT] 4.3236;0.66488 -;- 370 NaN NaN 191809.6 NaN 14689 3799 18486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18492 77.329 NaN 290150 35 0 73226 0.327 + 5475 FIRDKFLL 8 54 526.3187006216177 1050.6228483100354 2 526.3189086914062 MULTI HCD FTMS 0 0 0 18491 181285.140625 0.25840407703973367 -5 0.07067108154296875 1 Unmodified _FIRDKFLL_ REV__ENSG00000137674|ENST00000260228|MMP20 28.486842064014134 0.3788298654084067 2 AT{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 56.498 0 0 5.3776 0 0 487.28917128730626 0 487.28917128730626 0 41.01342204748164 0 0 0 1.5 0 0.805462187404089 0 AT{M(Oxidation (M))|F}{I|L}{I|L} 5.3776 - 90 NaN NaN 140658.6 NaN 14690 3800 18491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18493 77.334 NaN 243870 35 0 18130 0.261 + 29281 TYLPQTYII 9 63 556.3051429781832 1110.5957330231663 2 556.3051147460938 MULTI HCD FTMS 0 0 0 18491 124267.03125 0.40541234908845186 11 -0.29764556884765625 2 Unmodified _TYLPQTYII_ ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C 34.93206674587334 0.08860942999206235 2 [YT]{I|L}[QP]TY{I|L}{I|L} 9 0 + 41.876 0 0 3.7706 3.7706 82.153 0 0 0 3.388185565533796 4.894549897933871 3.388185565533796 3.388185565533796 0 1.1989700043360187 0.958607314841775 0 0 + + [YT]{I|L}[QP]TY{I|L}{I|L};[Y{I|L}]T[QP]TY{I|L}{I|L} 3.7706;3.4655 +;- + 229 NaN NaN 138384 NaN 14691 3800 18491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18494 77.337 NaN 225470 35 0 18984 0.261 + 6934 FPVLDANDL 9 67 502.2582205867835 1002.5018882403671 2 502.2586975097656 MULTI HCD FTMS 0 0 0 18491 108725.90625 0.30016007771382625 9 -0.2411346435546875 3 Unmodified _FPVLDANDL_ ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3 61.60191391372663 0.015340508911304802 2 [YT]{I|L}{[HG]|PP}AND{I|L} 9 5 + 62.896 0 0 6.2739 6.2739 89.001 0 0 0 11.970150946366417 35.44917177197476 11.970150946366417 9.208187539523749 0 1.055462187404089 1.5228787452803376 0 0 [YT]{I|L}{[HG]|PP}AND{I|L};[YT]{I|L}{[HG]|PP}AGGD{I|L};[{M(Oxidation (M))|F}V]P{I|L}DAND{I|L};[YT]{I|L}{[QG]|[NA]}{[HG]|PP}D{I|L};[{M(Oxidation (M))|F}V]P{I|L}DAGGD{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[NV]|[RG]}{[MS]|[{M(Oxidation (M))|F}A]}PD{I|L} 6.2739;5.3554;4.2935;3.8534;2.3463;1.6338 -;-;-;-;-;- 196 NaN NaN 124457.8 NaN 14692 3800 18491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18496 77.342 NaN 663230 35 0 106830 0.327 -1 TPQFPDMIL 9 75 539.26788511357 1076.5212172939398 2 539.2679443359375 MULTI HCD FTMS 0 0 0 18495 468345.625 0.024043015144956582 63 -1.8128128051757812 1 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 29.081581746732265 0.1154664336125038 2 V[HV][C(Carbamidomethyl (C))S]{I|L}{I|L} 7 -1 29.314 0 0 2.723 0 0 250.0949421613297 0 250.0949421613297 0 8.947810245356862 0 0 0 1.3494850021680094 0 0.7614393726401688 0 V[HV][C(Carbamidomethyl (C))S]{I|L}{I|L} 2.723 - 337 NaN NaN 201812.5 NaN 14693 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18497 77.346 NaN 762780 35 0 176950 0.261 + 6484 FPIPGEPGF 9 44 480.74560057336413 959.4766482135283 2 480.7449035644531 MULTI HCD FTMS 0 0 0 18495 783722.6875 1 0 0 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 77.98433622928108 0.006504613272346738 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 68.114 0 0 7.0991 7.0991 95.46 0 0 0 2.4472749489669354 57.65662222408956 2.4472749489669354 68.11419712969631 0 2.7302046884880937 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 7.0991 + + 129 NaN NaN 205258.2 NaN 14694 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18498 77.35 NaN 407080 35 0 62584 0.261 + 5988 FPDQVAIQL 9 55 515.7819895057114 1029.5494260782227 2 515.7823486328125 MULTI HCD FTMS 0 0 0 18495 390164.3125 0.10565920503267624 23 -0.668609619140625 3 Unmodified _FPDQVAIQL_ ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000100504|P06737-2|PYGL 33.4449034751529 0.0954363425218424 2 V{I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 8 5 53.313 0 0 5.1783 0 0 143.062303611525 0 143.062303611525 0 42.855800607042625 0 0 0 1.5 0 0 0 V{I|L}AC(Carbamidomethyl (C))A{I|L}Q{I|L} 5.1783 - 236 NaN NaN 148467.8 NaN 14695 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18499 77.353 NaN 589290 35 0 44922 0.261 + 33614 YISKTMCEF 9 86 561.2539403780073 1120.4933278228145 2 561.254638671875 MULTI HCD FTMS 0 0 0 18495 449586 1 0 0 4 Unmodified _YISKTMCEF_ REV__tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1 18.1463463914782 0.20357593197100715 2 {I|L}PT{M(Oxidation (M))|F} 4 -1 36.938 0 0 3.2966 0 0 644.2300917269714 0 644.2300917269714 0 15.511525224473814 0 0 0 1.5 0 0 0 {I|L}PT{M(Oxidation (M))|F} 3.2966 - 580 + NaN NaN 181250.8 NaN 14696 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18500 77.357 NaN 411450 35 0 48581 0.261 + -1 FISSFQFVF 9 65 582.292466181139 1162.570379429078 2 582.29052734375 MULTI HCD FTMS 0 0 0 18495 287620.53125 0.5734264544847829 4 -0.09442901611328125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FISSFQFVF_ REV__ENST00000284617.6_1_1:229460388-229460436:-|nuORF 25.399314129420986 0.14091189997036632 2 A{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 -1 42.713 0 0 3.674 0 0 680.3272896847405 0 680.3272896847405 0 35.72301001672965 0 0 0 1.5 0 0 0 A{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.674 - 161 + NaN NaN 158266.8 NaN 14697 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18501 77.36 NaN 234020 35 0 29394 0.262 + 28700 TSLIRRGQ 8 66 465.77746469421976 929.5403764552395 2 465.7779846191406 MULTI HCD FTMS 0 0 0 18495 404198.625 0.841320541588932 9 -0.26216888427734375 6 Unmodified _TSLIRRGQ_ REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|52|1|anti-sense 2.302733041254933 0.5385759549224092 2 Q 1 -1 3.9794 0 0 0.4281 0 0 431.2719571210583 367.1967867486938 798.4687438697521 0 0 0 0 0 0 0 0 0 Q 0.4281 + + 16 + NaN NaN 126610.2 NaN 14698 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18502 77.363 NaN 170340 35 0 14309 0.261 + -1 QLSMDPTIT 9 68 511.24929277903095 NaN 0 511.2637634277344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _QLSM(Oxidation (M))DPTIT_ REV__ENSG00000196862|ENST00000408999|RGPD4 7.289230182591677 0.2599242500475609 2 E{I|L} 2 -1 9.464 0 0 0.9274 0 0 546.2151250094307 229.11927210025627 775.334397109687 0 0 0 0 0 0 0 0 0 E{I|L} 0.9274 - 43 + NaN NaN 119635.5 NaN 14699 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18503 77.367 NaN 461500 35 0 72808 0.261 + 17255 LYPKTLFLL 9 80 554.344071215102 1106.6735894970038 2 554.8471069335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LYPKTLFLL_ ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-5|PPP3CA 22.736283301280096 0.1639198954644489 2 [Y{I|L}]{I|L} 3 6 32.447 0 0 2.932 0 0 0 714.4193530070226 714.4193530070226 11.785437214322343 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.932 - 60 NaN NaN 158098.4 NaN 14700 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18504 77.37 NaN 242850 35 0 26330 0.261 + 7366 FVELGQVAL 9 48 488.27922385469105 974.5438947761821 2 488.2796325683594 MULTI HCD FTMS 0 0 0 18495 174533.96875 0.7827664286589241 3 -0.08551025390625 9 Unmodified _FVELGQVAL_ ENSG00000162736|ENST00000294785|NCSTN;ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN 39.94969957227396 0.06557568441294001 2 [{M(Oxidation (M))|F}V]E{[VA]|[{I|L}G]}QVA{I|L} 9 0 + 55.608 0 0 5.706 5.706 88.085 0 0 0 4.762036441594191 43.556518697048716 4.762036441594191 9.208187539523749 0 1.8494850021680094 0 0 0 + + [{M(Oxidation (M))|F}V]E{[VA]|[{I|L}G]}QVA{I|L};[{M(Oxidation (M))|F}V]E{[VA]|[{I|L}G]}[AG]VA{I|L};{[VA]|[{I|L}G]}T[Y{I|L}][QP]A{I|L};[{M(Oxidation (M))|F}V][{I|L}T]S[QP]A{I|L} 5.706;4.7612;1.7795;1.1905 +;-;-;- + 112 NaN NaN 128833.2 NaN 14701 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18505 77.373 NaN 144380 35 0 20488 0.261 -1 MPDPWAEFHL 10 50 629.7818681235054 1257.5491833138108 2 629.7817993164062 MULTI HCD FTMS 0 0 0 18495 75160.1953125 0.30094021676568183 6 -0.15960693359375 10 Oxidation (M) _M(Oxidation (M))PDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 29.081581746732265 0.240155558137004 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 3 -1 20.062 0 0 1.5953 0 0 0 895.4120732886732 895.4120732886732 14.220449851406514 0 0 0 0 1 0 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D 1.5953 + + 45 NaN NaN 109941.1 NaN 14702 3801 18495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18507 77.378 NaN 319050 35 0 38663 0.327 -1 0 73 404.1881635092436 806.3617740852873 2 404.1881408691406 MULTI HCD FTMS 0 0 0 18506 152319.65625 0.38356482279335075 1 -0.01273345947265625 1 NaN NaN 2 {[{M(Oxidation (M))|F}H]|[RQ]}P 3 -1 4.437 0 0 0.55025 0 0 0 422.12633642343104 422.12633642343104 0.4575749056067493 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}P 0.55025 - 37 NaN NaN 133253.2 NaN 14703 3802 18506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18508 77.382 NaN 751150 35 0 71050 0.261 + 3291 EEFGQAFSF 9 76 531.2323984929603 1060.4502440527206 2 531.7344970703125 MULTI HCD FTMS 0 0 0 18506 227333.40625 0.28102392238550294 -3 0.0643310546875 2 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 110.5527297667825 0.0028521687250969148 2 EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 78.343 0 0 7.3877 7.3877 90.984 0 0 0 55.323420325417416 11.210149894766701 11.210149894766701 9.208187539523749 0 2.3494850021680094 0 1.579689690656103 0 + + EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}G[AG]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}{M(Oxidation (M))|F}QQS{M(Oxidation (M))|F};[RN]EAQG[HC]{M(Oxidation (M))|F};[RN]EQQ[HC]{M(Oxidation (M))|F} 7.3877;6.5194;5.3203;3.9972;3.5749;2.3464 +;-;-;-;-;- + 694 + NaN NaN 223824.1 NaN 14704 3802 18506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18509 77.386 NaN 754100 35 0 59240 0.261 + 24442 RYLDLFTNF 9 87 594.8060392061491 1187.597525479098 2 594.8065185546875 MULTI HCD FTMS 0 0 0 18506 182719.84375 0.21954459356933065 -4 0.073638916015625 3 Unmodified _RYLDLFTNF_ ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 81.9152076656658 0.005232646987511684 2 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 9 0 + 72.471 0 0 6.1024 6.1024 87.326 0 0 0 1.9406792894013876 60.42011410658188 1.9406792894013876 7.896705831337329 0 2.305462187404089 0 0.8494850021680094 0.2742275032520141 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}[KG]{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F};[YR]{I|L}D{I|L}{M(Oxidation (M))|F}TGG{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}T[KG]{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}[KG]{I|L}{M(Oxidation (M))|F}TGG{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}T[KG]{I|L}{M(Oxidation (M))|F}TGG{M(Oxidation (M))|F};[YG]AA[KG]{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F};[YG][{I|L}A][KQ]{M(Oxidation (M))|F}TN{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[WT]|[RM]}{I|L}{[YC]|[HE]}{[QD]|[EN]|[WG]|[KD]|[RS]} 6.1024;5.4374;5.327;4.8037;4.6657;4.032;3.6622;3.0414;0.063981 +;-;-;-;-;-;-;-;- + 1137 NaN NaN 227791.4 NaN 14705 3802 18506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18511 77.391 NaN 2440900 35 0 263350 0.327 + 13563 KYPENFFLL 9 109 585.8131605635726 1169.6117681939452 2 585.8135375976562 MULTI HCD FTMS 0 0 0 18510 467191.25 0.0023748618060739366 78 -2.2126007080078125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 91.705 0 0 7.8406 7.8406 90.546 0 0 0 8.123468415207498 54.17226875575465 8.123468415207498 8.182503180159344 0 2.6307196863200843 0 0.3054621874040891 1.7728787452803376 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.8406;7.141;7.0533;6.6746;6.3537;6.3537;6.2469;5.975;5.9483;5.8873 +;-;-;-;-;-;-;-;-;- + 3805 NaN NaN 478567.3 NaN 14706 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18512 77.395 NaN 1759600 35 0 183050 0.261 + 26669 SYADQMFLL 9 97 552.2575729466772 1102.5005929601543 2 552.2579956054688 MULTI HCD FTMS 0 0 0 18510 419733.6875 0.12908396719432974 15 -0.44283294677734375 2 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 96.36657018975838 0.004359138328518304 2 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 102.12 0 0 9.2625 9.2625 95.955 0 0 0 21.883957647232265 16.478174818886373 16.478174818886373 15.955612550363796 0 1.642159058960253 2 1.0356668758921828 0.6747425010840047 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DSQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DQS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DS[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[AG]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9.2625;7.8153;7.2776;6.8145;5.8304;5.6036;5.3673;5.0986;4.1564;3.6514 -;-;+;-;-;-;-;-;-;- + 3473 NaN NaN 380090.8 NaN 14707 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18513 77.399 NaN 524900 35 0 79253 0.261 -1 KMKFSNEVF 9 86 573.286554001384 1144.558555069568 2 573.286376953125 MULTI HCD FTMS 0 0 0 18510 164522.6875 0.15652018231373188 9 -0.265838623046875 3 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 25.399314129420986 0.14091189997036632 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 60.494 0 0 5.2854 0 0 305.13691909004064 0 305.13691909004064 0 54.807904302936166 0 0 0 2.8494850021680094 0 0.6549471895720985 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5.2854 - 454 NaN NaN 175113 NaN 14708 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18514 77.402 NaN 329070 35 0 15120 0.262 + 12410 KPGKGARAE 9 81 457.2642804947058 912.5140080562117 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18510 257916.4375 0.34305581534159163 47 -1.3510284423828125 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 13.979 0 0 1.532 0 0 370.2201636314049 411.2235201471313 781.4436837785362 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.532 - 40 + NaN NaN 140256.4 NaN 14709 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18515 77.405 NaN 748890 35 0 115190 0.261 -1 0 85 413.1934580881088 824.3723632430176 2 413.19342041015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.42 0 0 1.3853 0 0 659.2936716920395 0 659.2936716920395 0 3.3210394903840346 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3853 - 20 + NaN NaN 199364.3 NaN 14710 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18516 77.409 NaN 1074000 35 0 172020 0.261 + 32272 VYTVVDEMFL 10 77 616.3000499544922 1230.5855469757844 2 616.2997436523438 MULTI HCD FTMS 0 0 0 18510 109637.234375 0.03224156326562871 -9 0.14124298095703125 6 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 197.16714112316518 4.2288640611536333E-23 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 123.41 0 0 10.029 10.029 96.912 0 0 0 19.488474775526186 92.26789385964942 19.488474775526186 18.762874945799766 0 3.1549471895720984 1.5228787452803376 2.9291746928241125 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]T[MT]VEE{M(Oxidation (M))|F}{I|L};[YV]Y{M(Oxidation (M))|F}[HS]R{M(Oxidation (M))|F}{I|L};[YV]Y{M(Oxidation (M))|F}G[WH]{M(Oxidation (M))|F}{I|L} 10.029;8.5042;7.8647;7.2137;7.0173;4.8743;3.0996;2.9841 +;-;-;-;-;-;-;- + 1327 NaN NaN 257848.6 NaN 14711 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18517 77.412 NaN 606780 35 0 63098 0.261 + 29197 TYKNFFYLI 9 95 604.8215079949872 1207.6284630567743 2 604.8213500976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TYKNFFYLI_ ENSG00000011405|ENST00000691414|PIK3C2A 66.45667989310934 0.010234776021261575 2 [YT]KH[RD]Y{I|L} 8 4 58.221 0 0 4.8211 0 0 0 128.07264225727923 128.07264225727923 31.565220158670108 0 0 0 0 1.8494850021680094 1.5228787452803376 0 0.909097005026964 [YT]KH[RD]Y{I|L} 4.8211 - 748 NaN NaN 182817 NaN 14712 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18518 77.415 NaN 273930 35 0 47531 0.262 + 18375 MPMNVADLI 9 61 510.24856067263147 1018.482568412063 2 510.2489929199219 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 41.8396318013385 0.056899836730939755 2 TEEPAD{I|L}{I|L} 8 5 51.209 0 0 5.028 0 0 132.02646597241295 0 132.02646597241295 0 21.25814761566978 0 0 0 1.9247425010840047 0 0.8252574989159953 0 TEEPAD{I|L}{I|L} 5.028 - 295 + NaN NaN 126290.8 NaN 14713 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18519 77.419 NaN 1730600 35 0 129520 0.261 + 7433 FVSPFLAW 8 101 483.75790121596066 965.5012494987213 2 483.7575988769531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _FVSPFLAW_ REV__ENST00000278935.7_2_11:117283502-117283925:+|nuORF 49.66892048692302 0.12981580074710167 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPK 7 -1 65.856 0 0 6.8209 0 0 0 160.04074831259928 160.04074831259928 21.866202690821183 0 0 0 0 1.6237125054200234 1.3979400086720375 0.9308845489566889 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VSPK 6.8209 - 3685 NaN NaN 361588.7 NaN 14714 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18520 77.422 NaN 171750 35 0 17558 0.261 -1 QIRGYLEDM 9 51 570.7714825173794 1139.5284121015586 2 570.7665405273438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _QIRGYLEDM(Oxidation (M))_ tr|U7SXA5|U7SXA5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00955PE=4SV=1 19.256988751693697 0.19398022840297344 2 YED{I|L}{M(Oxidation (M))|F} 5 -1 62.691 0 0 5.5015 0 0 454.265064674769 0 454.265064674769 0 55.70107520596089 0 0 0 2.5 0 0.2742275032520141 0 YED{I|L}{M(Oxidation (M))|F} 5.5015 - 46 + NaN NaN 117935.3 NaN 14715 3803 18510 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18522 77.427 NaN 23307000 35 0 4623300 0.327 + 13800 KYPSPFFVF 9 64 566.2972883717671 1130.580023810334 2 566.297607421875 MULTI HCD FTMS 0 0 0 18521 22639362 0.20366751844790326 9 -0.26500701904296875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 118.89474601620944 0.0014903111061077812 2 KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 85.57 0 0 7.5687 7.5687 88.08 0 0 0 3.279798345235264 3.279798345235264 3.279798345235264 3.279798345235264 0 2.8494850021680094 0 1.024227503252014 0 + + KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}P[QT]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSPYK{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSPKY{M(Oxidation (M))|F} 7.5687;7.2786;5.3488;5.2868;4.8045;4.5996;4.4034;4.2267;3.635;3.635 +;+;-;-;-;-;-;-;-;- + 1415 + NaN NaN 405987.1 NaN 14716 3804 18521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18523 77.432 NaN 602740 35 0 50178 0.261 + -1 YSARCNAHF 9 100 563.2495463510022 1124.4845397688043 2 563.2488403320312 MULTI HCD FTMS 0 0 0 18521 83795.96875 0.2641575548646349 3 -0.0740966796875 2 Carbamidomethyl (C) _YSARC(Carbamidomethyl (C))NAHF_ REV__ENSG00000168546|ENST00000524240|GFRA2;REV__ENST00000306793.4_1_8:21550792-21640469:-|nuORF;REV__nc|ENSG00000168546|O00451-2|GFRA2;REV__nc|ENSG00000168546|O00451-3|GFRA2 15.847184025352803 0.2234401846867398 2 {I|L}S{M(Oxidation (M))|F} 3 -1 25.15 0 0 2.2366 0 0 759.3224417177285 0 759.3224417177285 0 4.180964183448435 0 0 0 0.3054621874040891 0 0.28872548999643577 0 {I|L}S{M(Oxidation (M))|F} 2.2366 - 244 + NaN NaN 182463.2 NaN 14717 3804 18521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18525 77.436 NaN 874590 35 0 99644 0.327 + 6262 FPFDVAVKF 9 79 535.2893557146402 1068.5641584960804 2 535.2897338867188 MULTI HCD FTMS 0 0 0 18524 639834.3125 0.5924463781099192 3 -0.10123443603515625 1 Unmodified _FPFDVAVKF_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 142.0795815696625 1.719916958814042E-05 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F} 9 0 + 108.6 0 0 10.164 10.164 92.982 0 0 0 90.42948339765223 16.478174818886373 16.478174818886373 8.015136206082815 0 3.004432191740108 0 1.0356668758921828 0.5629529932484498 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PV{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DV{[VA]|[{I|L}G]}{M(Oxidation (M))|F}K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}D[K{I|L}][VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}[K{I|L}][VG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}VP{M(Oxidation (M))|F}AVK{M(Oxidation (M))|F} 10.164;9.4134;9.2272;8.0311;6.8411;5.645;5.6192;5.2241;5.0379;4.9168 +;+;-;-;-;-;-;-;-;- + 924 + NaN NaN 232872.8 NaN 14718 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18526 77.441 NaN 833160 35 0 87910 0.261 + 962 AYELTQYYF 9 96 599.2769491253474 1196.5393453174947 2 599.2767944335938 MULTI HCD FTMS 0 0 0 18524 635592.3125 0.7622449861450914 4 -0.13404083251953125 2 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 86.33184430468982 0.004622086694044132 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F} 9 0 + 108.18 0 0 9.0414 9.0414 93.43 0 0 0 24.13734275855269 80.35859451926116 24.13734275855269 9.208187539523749 0 2.6237125054200234 1.6989700043360187 1.5114393726401687 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]EQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]E[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQ[{I|L}T]YY{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[WR]YY{M(Oxidation (M))|F};[Y{I|L}][TA]EQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQQE{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[AG][{I|L}T]YY{M(Oxidation (M))|F} 9.0414;8.2719;7.2676;6.498;6.4947;6.4286;6.3712;5.9264;5.8622;5.7252 +;-;-;-;-;-;-;-;-;- + 1204 NaN NaN 225608 NaN 14719 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18527 77.444 NaN 440990 35 0 108880 0.261 + 7034 FPYSYEVAL 9 55 544.7687251189523 1087.5228973047044 2 544.7686157226562 MULTI HCD FTMS 0 0 0 18524 409810.65625 0.1668735013256794 12 -0.36420440673828125 3 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 26.88365393820708 0.12808753336095696 2 MEVA{I|L} 5 5 54.068 0 0 4.9717 0 0 526.251268455275 0 526.251268455275 0 38.661968799114845 0 0 0 1.5 0 0.3494850021680094 0 MEVA{I|L} 4.9717 - 109 NaN NaN 170652.8 NaN 14720 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18528 77.448 NaN 725900 35 0 119720 0.261 + 17003 LYIQTDHLFF 10 82 648.835211900025 NaN 0 648.8350219726562 PEAK HCD FTMS 0 0 0 18524 227470.0625 0.426727065091477 3 -0.10123443603515625 4 Unmodified _LYIQTDHLFF_ ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF 83.42873516780209 0.007641857024354399 2 {I|L}NESGTPR 8 9 25.946 0 0 2.0026 0 0 165.0805111134162 273.12409387760005 438.20460499101625 0 0 0 0 0 0.8252574989159953 0 0.3807196863200844 0 {I|L}NESGTPR 2.0026 - 1328 + NaN NaN 214454.7 NaN 14721 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18529 77.451 NaN 422870 35 0 44170 0.263 + 1129 AYLDALQTL 9 76 504.2740219002431 NaN 0 504.2739562988281 PEAK HCD FTMS 0 0 0 18524 155390.640625 1 0 0 5 Unmodified _AYLDALQTL_ ENSG00000114982|ENST00000431828|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;ENST00000487070.5_1_2:97281260-97297069:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-6|KANSL3;nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3 76.82478488871298 0.004028098895544731 2 TDDA{I|L}Q 6 5 48.612 0 0 4.8296 0 0 131.09014477529246 229.11959253482658 360.20973731011907 0 0 0 0 0 1.6747425010840047 0 0.3807196863200844 0.5941876774005248 TDDA{I|L}Q 4.8296 - 276 + NaN NaN 153462.8 NaN 14722 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18530 77.454 NaN 424990 35 0 22161 0.261 -1 EECLQGNSF 9 88 542.2233078576064 1082.4320627820127 2 542.22314453125 MULTI HCD FTMS 0 0 0 18524 183388.09375 1 0 0 6 Carbamidomethyl (C) _EEC(Carbamidomethyl (C))LQGNSF_ ENST00000261813.8_1_5:139625415-139625532:-|nuORF 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 -1 29.367 0 0 2.713 0 0 683.2517782134565 0 683.2517782134565 0 9.854451259807107 0 0 0 0.3252574989159953 0 0.3807196863200844 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.713 - 466 + NaN NaN 158765.2 NaN 14723 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18531 77.458 NaN 199160 35 0 21264 0.261 + -1 EMSRAVQLGF 10 63 577.2884568881587 NaN 0 577.2879638671875 PEAK HCD FTMS 0 0 0 18524 124642.3984375 0.1603548199436183 13 -0.397003173828125 7 Oxidation (M) _EM(Oxidation (M))SRAVQLGF_ REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF 6.2057823575117 0.3348729994311477 2 {I|L}D{I|L}{I|L}QR 6 -1 15.583 0 0 1.3521 0 0 249.0438804737799 162.05559717349846 411.0994776472784 0 0 0 0 0 0 0 0 0 {I|L}D{I|L}{I|L}QR 1.3521 - 114 + NaN NaN 122063.6 NaN 14724 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18532 77.461 NaN 212480 35 0 19550 0.261 + 20403 NYVVIGTCTF 10 49 558.773650527578 1115.5327481219558 2 558.7741088867188 MULTI HCD FTMS 0 0 0 18524 69118.1875 0.17752236223685455 13 -0.397003173828125 8 Unmodified _NYVVIGTCTF_ ENSG00000075188|ENST00000552283|NUP37;ENST00000548994.1_1_12:102509600-102512308:-|nuORF;ENST00000551200.5_1_12:102471044-102512308:-|nuORF 24.990960013464015 0.27735500881591096 2 {I|L}V[NP]{M(Oxidation (M))|F} 5 8 30.445 0 0 2.7292 0 0 527.205767083677 0 527.205767083677 0 22.486512420283233 0 0 0 1.4247425010840047 0 0 0 {I|L}V[NP]{M(Oxidation (M))|F} 2.7292 - 56 + NaN NaN 123386.3 NaN 14725 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18533 77.464 NaN 170150 35 0 45709 0.263 -1 0 33 422.19764662669934 421.19037016009935 1 422.1985778808594 MULTI HCD FTMS 0 0 0 18524 95368.859375 1 0 0 9 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 3.6764 0 0 256.1116786091212 0 256.1116786091212 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.6764 - 3 + NaN NaN 111288.8 NaN 14726 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18534 77.468 NaN 185970 35 0 45974 0.261 -1 0 55 610.1817786495768 609.1745021829768 1 610.26708984375 MULTI HCD FTMS 0 0 0 18524 32078.708984375 0.34549259017709916 -11 0.18707275390625 10 NaN NaN 2 W[Y{M(Oxidation (M))|F}] 3 -1 4.1812 0 0 0.68637 0 0 94.95137093473302 0 94.95137093473302 0 4.1812123800902175 0 0 0 0 0 0 0 W[Y{M(Oxidation (M))|F}] 0.68637 - 6 + NaN NaN 129650.1 NaN 14727 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18535 77.471 NaN 294620 35 0 22640 0.261 -1 FVTWIEGVM 9 88 549.2706956796301 1096.52683842606 2 549.7767944335938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Oxidation (M) _FVTWIEGVM(Oxidation (M))_ ENSG00000122194|ENST00000308192|PLG 32.30548876998284 0.10066689432505688 2 Q{M(Oxidation (M))|F}Q{I|L}EGV{M(Oxidation (M))|F} 8 -1 51.056 0 0 4.6561 0 0 130.0618858887538 0 130.0618858887538 0 31.925937948278357 0 0 0 1.4247425010840047 0 0 0 Q{M(Oxidation (M))|F}Q{I|L}EGV{M(Oxidation (M))|F} 4.6561 - 648 + NaN NaN 136589 NaN 14728 3805 18524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18537 77.476 NaN 1500300 35 0 296610 0.327 -1 SYAASGMCLLF 11 102 589.7642475890005 1177.513942244801 2 589.7648315429688 MULTI HCD FTMS 0 0 0 18536 1201195.5 0.7652517573517871 1 -0.026092529296875 1 Oxidation (M) _SYAASGM(Oxidation (M))CLLF_ ENSG00000132164|ENST00000254488|SLC6A11 36.12702656103203 0.16189322891242686 2 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F} 9 -1 + 58.27 0 0 4.9486 4.9486 89.554 0 0 0 3.2908794867040427 11.275881847607877 3.2908794867040427 18.239087409443187 0 1.3807196863200843 1.5228787452803376 1.0629529932484498 0.3252574989159953 [{I|L}T][C(Carbamidomethyl (C))N][Y{M(Oxidation (M))|F}]T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YC(Carbamidomethyl (C))]{[CP]|[EA]}T{I|L}{M(Oxidation (M))|F};[{I|L}T][C(Carbamidomethyl (C))N]YY{I|L}[MT] 4.9486;3.3996;1.9254 -;-;- 653 NaN NaN 326284.5 NaN 14729 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18538 77.48 NaN 229830 35 0 21027 0.261 + 7436 FVSSPFSVFF 10 69 582.292466181139 1162.570379429078 2 582.2929077148438 MULTI HCD FTMS 0 0 0 18536 77463.703125 0.15443868503121871 9 -0.27271270751953125 2 Unmodified _FVSSPFSVFF_ REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|30|3|anti-sense 14.838274106304384 0.3723198072575719 2 S{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 -1 41.542 0 0 3.5733 0 0 664.309373924025 0 664.309373924025 0 34.55259398656281 0 0 0 1 0 0.3494850021680094 0 S{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.5733 - 102 NaN NaN 127430.8 NaN 14730 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18539 77.484 NaN 548760 35 0 40747 0.261 + 31863 VYMSCFPFFI 10 78 627.2897515226209 1252.5649501120417 2 627.7922973632812 MULTI HCD FTMS 0 0 0 18536 88023.515625 0.31979072246129475 -5 0.133514404296875 3 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 34.10243960390752 0.1965851268881605 2 EDVVTM{I|L} 7 -1 66.859 0 0 5.3378 0 0 447.18028456855626 0 447.18028456855626 0 38.869638510539914 0 0 0 1.6549471895720984 0 0.7614393726401688 0 EDVVTM{I|L} 5.3378 - 343 NaN NaN 177023.7 NaN 14731 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18540 77.487 NaN 1955000 35 0 538750 0.261 + 20090 NYIPRFWTF 9 85 622.3162503270299 1242.6179477208598 2 622.3162231445312 MULTI HCD FTMS 0 0 0 18536 544571.625 0.041907084474724736 -6 0.14617919921875 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 125.52916310638031 0.0008761121089336018 2 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 99.324 0 0 7.9932 7.9932 96.088 0 0 0 12.228364094271328 12.228364094271328 12.228364094271328 35.89847691662253 0 2.5669015600442577 1.6989700043360187 0 1.4604093769761874 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PR{M(Oxidation (M))|F}[HS][{I|L}P];[YN]{I|L}PR{M(Oxidation (M))|F}PS[H{I|L}];{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}P[VG]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YPR{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}PR{I|L}[YG]T{M(Oxidation (M))|F};[QP][YV]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 7.9932;5.1042;4.8491;4.7258;4.7092;4.5566;3.6264;3.4907;3.4478;3.4043 +;-;-;-;-;-;-;-;-;- + 1467 NaN NaN 393533.9 NaN 14732 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18541 77.49 NaN 258300 35 0 38558 0.261 -1 CYMFCICSE 9 64 557.6879501873639 1113.3613474415276 2 557.6878051757812 MULTI HCD FTMS 0 0 0 18536 43780.30859375 0.3599986573637176 1 -0.026092529296875 5 Oxidation (M) _CYM(Oxidation (M))FCICSE_ ENST00000455680.5_1_1:91297146-91297428:-|nuORF 1.844237919475145 0.33703635659052655 2 C{M(Oxidation (M))|F}[HQ][HS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 24.698 0 0 2.2183 0 0 62.001469660489256 0 62.001469660489256 0 20.718421963928435 0 0 0 0 0 0.3807196863200844 0 C{M(Oxidation (M))|F}[HQ][HS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2183 - 61 + NaN NaN 125246.7 NaN 14733 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18542 77.494 NaN 244900 35 0 20418 0.261 -1 FVTWIEGVM 9 71 549.2706956796301 1096.52683842606 2 549.775390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _FVTWIEGVM(Oxidation (M))_ ENSG00000122194|ENST00000308192|PLG 39.957323273324995 0.06554068735427583 2 DER{M(Oxidation (M))|F} 4 -1 47.423 0 0 4.3248 0 0 531.335741111525 0 531.335741111525 0 29.463950151760656 0 0 0 1.5 0 0.6989700043360187 0 DER{M(Oxidation (M))|F} 4.3248 - 238 NaN NaN 123632.7 NaN 14734 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18543 77.497 NaN 112230 35 0 18437 0.261 + 32900 YAAVRHLL 8 42 471.7789306640625 NaN 0 471.7789306640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YAAVRHLL_ REV__ENSG00000048991|ENST00000683871|R3HDM1;REV__ENSG00000179912|ENST00000402412|R3HDM2;REV__nc|ENSG00000048991|Q15032-2|R3HDM1;REV__nc|ENSG00000048991|Q15032-3|R3HDM1;REV__nc|ENSG00000048991|Q15032-4|R3HDM1;REV__nc|ENSG00000048991|Q15032|R3HDM1;REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2;REV__R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant 5.760428011301431 0.38822285293237185 2 {M(Oxidation (M))|F}A 2 -1 9.464 0 0 1.0052 0 0 489.33768451718544 231.07756982974846 720.4152543469339 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A 1.0052 - 8 + NaN NaN 114205.2 NaN 14735 3806 18536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18545 77.502 NaN 1077500 35 0 299660 0.327 + 23175 RFLAATFLL 9 54 526.3187006216177 1050.6228483100354 2 526.3187866210938 MULTI HCD FTMS 0 0 0 18544 558428.4375 0.7959846266905148 2 -0.0688629150390625 1 Unmodified _RFLAATFLL_ ENSG00000119655|ENST00000555619|NPC2;nc|ENSG00000119655|P61916-2|NPC2 51.629811660486645 0.02929079705179888 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAAT{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 76.38 0 0 7.27 7.27 92.752 0 0 0 5.6424927368725974 67.96896906561031 5.6424927368725974 14.018637558036673 0 2.274227503252014 0 0.805462187404089 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAAT{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RAAT{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}RA{M(Oxidation (M))|F}[TA]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{M(Oxidation (M))|F}A[TA]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VG]A[YR]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VG]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L} 7.27;5.9357;4.1292;3.9885;3.9143;3.3218;3.1069 -;-;-;-;-;-;- 366 NaN NaN 257418.6 NaN 14736 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18546 77.506 NaN 958780 35 0 235710 0.261 + 6485 FPIPGEPGF 9 36 480.74560057336413 959.4766482135283 2 480.7449951171875 MULTI HCD FTMS 0 0 0 18544 545981.75 0.6966517094734481 6 -0.19091033935546875 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 89.42679046578446 0.004540987215715461 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 78.594 0 0 8.1913 8.1913 96.84 0 0 0 7.147642715192504 68.13608784304506 7.147642715192504 47.98577533287428 0 2.6989700043360187 0 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[VS]{[HG]|PP}G{M(Oxidation (M))|F} 8.1913;3.1901 +;- + 130 NaN NaN 227391.3 NaN 14737 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18547 77.51 NaN 662220 35 0 87806 0.261 -1 TPQFPDMIL 9 85 539.26788511357 1076.5212172939398 2 539.2683715820312 MULTI HCD FTMS 0 0 0 18544 292462.65625 0.015013877995663952 69 -1.9812240600585938 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 36.506200033944 0.08138327636155518 2 {M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L} 6 -1 33.215 0 0 3.0854 0 0 326.1580982892594 0 326.1580982892594 0 8.521869278533636 0 0 0 1.5 0 0.3054621874040891 0 {M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F}{I|L}{I|L} 3.0854 + + 894 NaN NaN 192897 NaN 14738 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18548 77.513 NaN 982910 35 0 212740 0.261 + 9157 HPIETLVDIF 10 72 592.3213089153093 1182.6280648974184 2 592.3214721679688 MULTI HCD FTMS 0 0 0 18544 225799.453125 0.24129494712009228 -3 0.0740966796875 4 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 41.8396318013385 0.12944265636084 2 RVD{I|L}{M(Oxidation (M))|F} 5 6 45.107 0 0 3.8142 0 0 534.2596302716812 0 534.2596302716812 0 32.43115345883339 0 0 0 1.2059771852360797 0 0.3494850021680094 0 RVD{I|L}{M(Oxidation (M))|F} 3.8142 - 236 NaN NaN 238740 NaN 14739 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18549 77.516 NaN 181730 35 0 28908 0.263 -1 0 61 465.77746469421976 929.5403764552395 2 465.77764892578125 MULTI HCD FTMS 0 0 0 18544 142905.4375 0.29745098730482633 14 -0.4237823486328125 5 NaN NaN 2 V 1 -1 3.0989 0 0 0.33338 0 0 603.3468472577771 224.0975741022094 827.4444213599864 0 0 0 0 0 0 0 0 0 V 0.33338 - 16 + NaN NaN 125134.6 NaN 14740 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18550 77.52 NaN 411420 35 0 35680 0.261 + 31864 VYMSCFPFFI 10 81 627.2897515226209 1252.5649501120417 2 627.2897338867188 MULTI HCD FTMS 0 0 0 18544 205033 0.4612241463436752 -3 0.0740966796875 6 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 34.10243960390752 0.1965851268881605 2 [YV]TVVDE 7 -1 66.885 0 0 5.3398 0 0 0 444.1567476861938 444.1567476861938 31.178863261218837 0 0 0 0 1.6747425010840047 2 0.3807196863200844 0 [YV]TVVDE 5.3398 - 459 + NaN NaN 160635 NaN 14741 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18551 77.523 NaN 665740 35 0 49492 0.261 -1 FPFPMDNQF 9 93 579.7494603753254 1157.4843678174507 2 579.7498779296875 MULTI HCD FTMS 0 0 0 18544 156491.890625 0.6731841519560757 12 -0.3580322265625 7 Oxidation (M) _FPFPM(Oxidation (M))DNQF_ ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8;nc|ENSG00000101773|Q99708-3|RBBP8 34.10243960390752 0.09241788333544565 2 ST{I|L}GS{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 9 -1 36.495 0 0 3.1529 0 0 130.9564566829277 0 130.9564566829277 0 6.686004532113213 0 0 0 0.5 0 1.1307196863200843 0 ST{I|L}GS{I|L}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 3.1529 - 1298 + NaN NaN 202208.7 NaN 14742 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18552 77.526 NaN 533690 35 0 168600 0.261 -1 LYPQFMFHL 9 71 606.2995372156983 1210.5845214981964 2 606.300048828125 MULTI HCD FTMS 0 0 0 18544 130554.125 0.4014730720945054 14 -0.4237823486328125 8 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 18.13498045792455 0.20367413111508956 2 [Y{I|L}]PQ 4 -1 32.664 0 0 2.6982 0 0 0 706.3040865533811 706.3040865533811 6.465912507003608 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]PQ 2.6982 + + 84 + NaN NaN 168069.1 NaN 14743 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18553 77.53 NaN 278400 35 0 39894 0.262 + -1 NRRCAILQ 8 59 515.782296089064 NaN 0 515.7825927734375 PEAK HCD FTMS 0 0 0 18544 72567.125 0.3823093900858116 3 -0.10256195068359375 9 Carbamidomethyl (C) _NRRC(Carbamidomethyl (C))AILQ_ REV__ENSG00000198452|ENST00000641545|OR14L1P 42.09456458481378 0.2981376606109059 2 Q{I|L}AQ 4 -1 34.993 0 0 3.3988 0 0 131.09516931401282 455.1911715143188 586.2863408283316 0 0 0 0 0 1.5 0 0 0.3054621874040891 Q{I|L}AQ 3.3988 - 66 + NaN NaN 128168.5 NaN 14744 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18554 77.533 NaN 227970 35 0 25657 0.261 + 11430 IYPVNAISF 9 66 512.2792371998992 1022.5439214665984 2 512.2792358398438 MULTI HCD FTMS 0 0 0 18544 102319.3203125 0.9160149459390671 2 -0.0688629150390625 10 Unmodified _IYPVNAISF_ ENSG00000154473|ENST00000368865|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3 78.7280429016045 0.006263961847259105 2 [Y{I|L}][VP]NA{I|L}S{M(Oxidation (M))|F} 9 0 + 82.686 0 0 8.0863 8.0863 88.363 0 0 0 1.7905216604071228 1.7905216604071228 1.7905216604071228 1.7905216604071228 0 2.774227503252014 1.2218487496163564 0 0.6861818737241735 + + [Y{I|L}][VP]NA{I|L}S{M(Oxidation (M))|F};[Y{I|L}][VP]GGA{I|L}S{M(Oxidation (M))|F};[Y{I|L}][VP]GQ{I|L}S{M(Oxidation (M))|F} 8.0863;7.9112;7.0778 +;-;- + 241 NaN NaN 141932.3 NaN 14745 3807 18544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18556 77.538 NaN 2179300 35 0 248000 0.327 + 13564 KYPENFFLL 9 102 585.8131605635726 1169.6117681939452 2 585.8136596679688 MULTI HCD FTMS 0 0 0 18555 1877090.25 0.009541766763137746 83 -2.3629150390625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 114.20165948288297 0.0022564706844261533 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 92.328 0 0 7.8939 7.8939 90.256 0 0 0 7.964627740862099 16.478174818886373 7.964627740862099 7.257724967479859 0 2.6307196863200843 0 0.2742275032520141 2.0125305739907815 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EQN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PGGE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.8939;7.2734;7.2129;7.1066;6.7341;6.6072;6.5924;6.4861;6.4256;6.1475 +;-;-;-;-;-;-;-;-;- + 6119 NaN NaN 425114.3 NaN 14746 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18557 77.542 NaN 1718000 35 0 184300 0.261 + 3292 EEFGQAFSF 9 82 531.2323984929603 1060.4502440527206 2 531.2326049804688 MULTI HCD FTMS 0 0 0 18555 1270615.375 0.9328210502552544 1 -0.032806396484375 2 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 216.56568483796636 8.600418336565962E-24 2 EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 0 + 102.1 0 0 9.6281 9.6281 96.656 0 0 0 9.580245580996419 9.580245580996419 9.580245580996419 18.788433120520168 0 3.0752574989159953 0 2.603917193908117 1.110924374808178 + + EE{M(Oxidation (M))|F}GQA{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}G[AG]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F};EE{M(Oxidation (M))|F}QQ{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}QGEE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}AQGEE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[AG]GEE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}QG{M(Oxidation (M))|F}EE;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}QQEE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}A[AG]GEE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}AQG{M(Oxidation (M))|F}EE 9.6281;7.8564;7.0295;4.4205;4.0452;3.1516;2.9056;2.893;2.7764;2.5303 +;-;-;-;-;-;-;-;-;- + 1274 NaN NaN 351445.4 NaN 14747 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18558 77.546 NaN 831900 35 0 70604 0.261 + 24443 RYLDLFTNF 9 80 594.8060392061491 1187.597525479098 2 594.80615234375 MULTI HCD FTMS 0 0 0 18555 758705.5 0.9116124839960947 2 -0.06650543212890625 3 Unmodified _RYLDLFTNF_ ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 85.76441949171179 0.004636955403846499 2 CPG{I|L}D{I|L}{M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 10 3 86.635 0 0 7.295 0 0 62.04121687000595 0 62.04121687000595 0 74.90803747765064 0 0 0 3 0 1.7104093769761874 0.7302046884880937 CPG{I|L}D{I|L}{M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 7.295 - 863 + NaN NaN 216807.7 NaN 14748 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18559 77.549 NaN 908120 35 0 69623 0.261 + 15631 LPEEISGLTSL 11 107 579.8162570090154 1157.6179610848308 2 579.816650390625 MULTI HCD FTMS 0 0 0 18555 310812.125 0.8252680008377152 -2 0.0621490478515625 4 Unmodified _LPEEISGLTSL_ ENSG00000137269|ENST00000370888|LRRC1;ENST00000487251.5_1_6:53762124-53769284:+|nuORF 100.0907132914201 0.019344642407192848 2 [EP]{I|L}E{I|L}SG{I|L}TS{I|L} 11 2 + 85.517 0 0 7.3873 7.3873 86.537 0 0 0 15.148689957647079 43.44197588259911 15.148689957647079 0.4568744131014171 0 2.344187677400525 1.154901959985743 1.3807196863200843 0 [EP]{I|L}E{I|L}SG{I|L}TS{I|L};[EP]E{I|L}{I|L}SG{I|L}TS{I|L};[EP]{I|L}[{I|L}T]DG{I|L}TS{I|L};[EP]{I|L}E{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS{I|L};[EP]E{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}TS{I|L};[TP][WR]QG{I|L}TS{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[HK]QG{I|L}TS{I|L};[TP][WR][AG]G{I|L}TS{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[HK][AG]G{I|L}TS{I|L};[HV][RP]S[YV]TS{I|L} 7.3873;7.3478;6.1169;5.5185;5.479;4.4097;3.9265;3.618;3.1349;2.336 -;-;-;-;-;-;-;-;-;- 1775 NaN NaN 225888.8 NaN 14749 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18560 77.552 NaN 297780 35 0 52307 0.264 -1 0 72 404.1881635092436 806.3617740852873 2 404.1883544921875 MULTI HCD FTMS 0 0 0 18555 176556.765625 0.4445976716804748 6 -0.184356689453125 5 NaN NaN 2 Q 1 -1 3.9794 0 0 0.4935 0 0 172.15738063001226 503.123042016772 675.2804226467842 0 0 0 0 0 0 0 0 0 Q 0.4935 - 28 + NaN NaN 126615.7 NaN 14750 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18561 77.556 NaN 645980 35 0 115260 0.261 + -1 NYLKGHPMTAQ 11 86 638.3112473458033 1274.6079417584065 2 638.311279296875 MULTI HCD FTMS 0 0 0 18555 247756.890625 0.2444241972485408 -4 0.1101531982421875 6 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 21.590151480376914 0.2689667140516965 2 [YN]{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 -1 + 63.317 0 0 4.9676 4.9676 83.031 0 0 0 1.7216751192405155 1.7216751192405155 1.7216751192405155 1.7216751192405155 0 1.9489700043360187 1.3979400086720375 0.7302046884880937 0.3494850021680094 [YN]{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}E[HQ][Q{I|L}][KC] 4.9676;4.8325;1.323 -;-;- 416 NaN NaN 191394.8 NaN 14751 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18562 77.559 NaN 239690 35 0 35909 0.261 -1 CQNSCCGRSR 10 59 642.7547980417648 1283.4950431503296 2 642.755126953125 MULTI HCD FTMS 0 0 0 18555 114623.7421875 0.5765957635780518 -3 0.10123443603515625 7 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))QNSC(Carbamidomethyl (C))C(Carbamidomethyl (C))GRSR_ ENST00000342619.10_1_2:183943717-183943840:+|nuORF 2.9952420565917617 0.4594494122822477 2 {M(Oxidation (M))|F}{I|L} 2 -1 13.443 0 0 1.0474 0 0 1005.336229392775 0 1005.336229392775 0 0.6567532885598126 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 1.0474 - 11 NaN NaN 121146.5 NaN 14752 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18563 77.562 NaN 266380 35 0 31005 0.263 + 15678 LPELNPPVL 9 46 496.29457135162346 990.5745897700469 2 496.2945556640625 MULTI HCD FTMS 0 0 0 18555 97071.53125 1 0 0 8 Unmodified _LPELNPPVL_ ENSG00000198746|ENST00000361720|GPATCH3 8.745405648335112 0.2847203663274469 2 NV{I|L} 3 6 24.693 0 0 2.4928 0 0 646.3680897443375 0 646.3680897443375 0 16.593793813122062 0 0 0 0 0 0 0 NV{I|L} 2.4928 - 11 NaN NaN 129402.2 NaN 14753 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18564 77.566 NaN 431690 35 0 48074 0.261 + -1 YNDMDYYD 8 93 557.6879501873639 1113.3613474415276 2 558.190185546875 MULTI HCD FTMS 0 0 0 18555 45065.37890625 0.4803502418918595 3 -0.08931732177734375 9 Oxidation (M) _YNDM(Oxidation (M))DYYD_ REV__ENSG00000125630|ENST00000263331|POLR1B;REV__nc|ENSG00000125630|Q9H9Y6-2|POLR1B;REV__nc|ENSG00000125630|Q9H9Y6-3|POLR1B;REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B;REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B;REV__POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant 2.577480529830294 0.5381683276125971 2 [YN]VV{I|L} 5 -1 30.177 0 0 2.7105 0 0 0 522.0118961077964 522.0118961077964 7.7815125038364386 0 0 0 0 0 1.6989700043360187 0 0 [YN]VV{I|L} 2.7105 - 662 NaN NaN 173559.7 NaN 14754 3808 18555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18566 77.571 NaN 13567000 35 0 2359500 0.327 + 13801 KYPSPFFVF 9 95 566.2972883717671 1130.580023810334 2 566.2977294921875 MULTI HCD FTMS 0 0 0 18565 7861663 0.07072484613672853 14 -0.40396881103515625 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 160.51597146486608 8.986712039288196E-09 2 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 106.44 0 0 9.4148 9.4148 89.663 0 0 0 16.676127934005436 16.478174818886373 16.478174818886373 1.249387366082999 0 2.774227503252014 0.9208187539523752 1.3098943791441968 0.9559771852360797 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9.4148;9.3043;7.9475;7.9398;7.837;7.4044;7.2939;6.5764;6.4089;6.3353 +;-;-;+;-;-;-;-;-;- + 7298 NaN NaN 651570.1 NaN 14755 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18567 77.575 NaN 4746500 35 0 806600 0.221 + 32273 VYTVVDEMFL 10 90 616.3000499544922 1230.5855469757844 2 616.2998046875 MULTI HCD FTMS 0 0 0 18565 3028221.5 0.8905240599251212 -3 0.0949554443359375 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 127.62 0 0 10.37 10.37 96.509 0 0 0 20.993624753846092 73.72363747448347 20.993624753846092 14.771212547196626 0 3.142159058960253 1.5228787452803376 2.885151878060192 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]VTVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVVTM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]VTVDEYM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]YEDVVV{M(Oxidation (M))|F}V;[YV]YEDVTMV{I|L} 10.37;9.1701;8.8793;8.6611;8.3343;7.7885;7.679;7.4561;7.1328;6.6087 +;-;-;-;-;-;-;-;-;- + 4381 NaN NaN 633160.2 NaN 14756 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18568 77.578 NaN 2528500 35 0 1083900 0.261 + 31489 VYFKNFIPF 9 86 587.817957823353 1173.621362713506 2 587.8186645507812 MULTI HCD FTMS 0 0 0 18565 1609796.125 1 0 0 3 Unmodified _VYFKNFIPF_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 57.47134341890925 0.0211188941628804 2 VY{I|L} 3 6 48.416 0 0 4.1254 0 0 0 795.3833069143387 795.3833069143387 30.87586824247719 0 0 0 0 1 1.6989700043360187 0 0 VY{I|L} 4.1254 - 556 + NaN NaN 475193.3 NaN 14757 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18569 77.581 NaN 949600 35 0 123280 0.261 + 26670 SYADQMFLL 9 85 552.2575729466772 1102.5005929601543 2 552.2578735351562 MULTI HCD FTMS 0 0 0 18565 653425.1875 0.20095293272641776 21 -0.61077880859375 4 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 82.5293158979368 0.005033931517079822 2 [YT]GD{[{M(Oxidation (M))|F}C]|[YS]}[TA]{I|L}{I|L} 10 5 + 53.451 0 0 4.8482 4.8482 89.442 0 0 0 12.963979799434284 15.162574822053543 12.963979799434284 18.96591250700361 0 1.305462187404089 2 0.805462187404089 0 [YT]GD{[{M(Oxidation (M))|F}C]|[YS]}[TA]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD{[{M(Oxidation (M))|F}C]|[YS]}[TA]{I|L}{I|L} 4.8482;3.1279 -;- 995 NaN NaN 233198 NaN 14758 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18570 77.585 NaN 494990 35 0 53999 0.261 + 29198 TYKNFFYLI 9 80 604.8215079949872 1207.6284630567743 2 604.8212890625 MULTI HCD FTMS 0 0 0 18565 286423.65625 0.7260172614471271 1 -0.03369903564453125 5 Unmodified _TYKNFFYLI_ ENSG00000011405|ENST00000691414|PIK3C2A 70.33199760932243 0.0089807860198535 2 [YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L} 9 0 + 88.858 0 0 7.3581 7.3581 90.923 0 0 0 20.246586506634472 69.192358343452 20.246586506634472 9.208187539523749 0 2.1747425010840047 1.6989700043360187 0 0.930884548956689 + + [YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Y{I|L};[YT]KGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Y{I|L};[YT]KN{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K[YT]{M(Oxidation (M))|F}Y{I|L}{I|L};{[DS]|[MA]|[CV]|TT}[RN]G[RD]Y{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[HG]|PP}[TP]{M(Oxidation (M))|F}Y{I|L}{I|L};[YT]KGG{M(Oxidation (M))|F}[Y{I|L}]{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}K[Y{M(Oxidation (M))|F}]TY{I|L}{I|L} 7.3581;6.5956;5.8995;5.137;4.0712;3.8889;3.8484;3.577;3.3087;2.9198 +;-;-;-;-;-;-;-;-;- + 995 NaN NaN 167804.7 NaN 14759 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18571 77.588 NaN 573260 35 0 79640 0.262 -1 MPMNVADLI 9 61 510.24856067263147 1018.482568412063 2 510.2486877441406 MULTI HCD FTMS 0 0 0 18565 244205.640625 0.7174744663158642 1 -0.03369903564453125 6 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 36.12702656103203 0.08312389501731911 2 DV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}{I|L} 8 -1 49.672 0 0 4.8771 0 0 114.01734535774786 0 114.01734535774786 0 -5.6677903326085755 -5.6677903326085755 0 0 1.9247425010840047 0 1.555462187404089 0 DV{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AD{I|L}{I|L} 4.8771 - 196 + NaN NaN 181254.6 NaN 14760 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18572 77.591 NaN 323930 35 0 16692 0.261 + 12411 KPGKGARAE 9 77 457.2642804947058 912.5140080562117 2 457.2644348144531 MULTI HCD FTMS 0 0 0 18565 389367.59375 0.5178995904109441 53 -1.51190185546875 7 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 11.594 0 0 1.2705 0 0 414.24671676546905 367.19648157291255 781.4431983383815 0 0 0 0 0 0.7614393726401688 0 0 0 Q 1.2705 - 20 + NaN NaN 134015.3 NaN 14761 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18573 77.6 NaN 406510 35 0 84917 0.261 -1 0 60 413.1934580881088 824.3723632430176 2 413.1934509277344 MULTI HCD FTMS 0 0 0 18565 237129.4375 0.25954804596609754 7 -0.20728302001953125 8 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.5132 0 0 659.2935648805161 0 659.2935648805161 0 7.870156338638594 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5132 - 10 + NaN NaN 157597.9 NaN 14762 3809 18565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18575 77.604 NaN 1795600 35 0 390300 0.327 + 1729 CITSPFRWTF 10 118 629.3063901670442 1256.5982274008884 2 629.305908203125 MULTI HCD FTMS 0 0 0 18574 902444.0625 0.7786038164305079 -2 0.06650543212890625 1 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 53.40400417844725 0.06540992187319636 2 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 10 -1 + 65.812 0 0 5.2373 5.2373 90.442 0 0 0 3.379231027444405 33.96713777483761 3.379231027444405 23.037275116073346 0 1.9291746928241125 0 1.110924374808178 0.3807196863200844 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[EC]{I|L}RR{M(Oxidation (M))|F}[VS]T{M(Oxidation (M))|F};[EC]{I|L}RR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VG]PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[WT]|[RM]}A[TP]T{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[WT]|[RM]}A[W{I|L}]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}[SG][RN]WT{M(Oxidation (M))|F};[YN][RD][KQ]WT{M(Oxidation (M))|F};{[WT]|[RM]}A[W{I|L}]{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PRR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F} 5.2373;3.404;3.404;3.3795;3.2453;3.1052;2.875;2.6844;2.3724;2.1645 -;-;-;-;-;-;-;-;-;- 3207 NaN NaN 373257.3 NaN 14763 3810 18574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18576 77.609 NaN 549140 35 0 53767 0.262 + 6263 FPFDVAVKF 9 62 535.2893557146402 1068.5641584960804 2 535.2897338867188 MULTI HCD FTMS 0 0 0 18574 346661.65625 0.3209869159289552 8 -0.2292633056640625 2 Unmodified _FPFDVAVKF_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 106.94017166704063 0.003441928997083001 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F} 9 0 + 101.74 0 0 9.5209 9.5209 92.657 0 0 0 91.27935355188811 16.478174818886373 16.478174818886373 8.381681563112409 0 2.892159058960253 0 0.4247425010840047 0.5994850021680094 + + {M(Oxidation (M))|F}P{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}DVAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}VAVK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[PA][YT]VK{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}D[K{I|L}][VG]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}[K{I|L}][VG]{M(Oxidation (M))|F};{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[KA]{[QN]|[E{I|L}]|[KN]}A{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[R{I|L}][VP]PE;{[{M(Oxidation (M))|F}D]|MM}P{M(Oxidation (M))|F}[K{I|L}][VG]{M(Oxidation (M))|F} 9.5209;8.7365;8.7151;6.2383;5.1524;4.6858;4.6644;4.566;3.7059;2.1876 +;+;-;-;-;-;-;-;-;- + 487 + NaN NaN 163973 NaN 14764 3810 18574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18577 77.612 NaN 413070 35 0 73498 0.261 + 9752 HYGLLFDEF 9 70 570.7714825173794 1139.5284121015586 2 570.7711181640625 MULTI HCD FTMS 0 0 0 18574 233492.140625 0.720574621668713 -3 0.10256195068359375 3 Unmodified _HYGLLFDEF_ ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF 50.855029805455786 0.030374663808198754 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}DE{M(Oxidation (M))|F} 9 3 + 61.132 0 0 5.3646 5.3646 91.388 0 0 0 3.9254497678533085 31.2684116877481 3.9254497678533085 33.52182518111363 0 1.9247425010840047 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}DE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[NV]|[RG]}[K{I|L}]E{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[NV]|[RG]}[Q{I|L}]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{[NV]|[RG]}[K{I|L}]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{[NV]|[RG]}[Q{I|L}]E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{[NV]|[RG]}[K{I|L}]E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}E{[NV]|[RG]}[Q{I|L}]E{M(Oxidation (M))|F} 5.3646;2.4229;2.4229;2.1587;2.1587;1.8946;1.8946 -;-;-;-;-;-;- 141 NaN NaN 168535.1 NaN 14765 3810 18574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18578 77.616 NaN 288650 35 0 16033 0.261 + 963 AYELTQYYF 9 75 599.2769491253474 1196.5393453174947 2 599.2764892578125 MULTI HCD FTMS 0 0 0 18574 94374.078125 0.11317973244499617 9 -0.25547027587890625 4 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 63.960520009940105 0.0120409805053046 2 [YV][DV]TQYY{M(Oxidation (M))|F} 9 3 + 59.107 0 0 4.9399 4.9399 82.247 0 0 0 0.02407232790197611 12.740597468822585 0.02407232790197611 0.02407232790197611 0 1.75 1.154901959985743 0.3252574989159953 0.3494850021680094 [YV][DV]TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}TQYY{M(Oxidation (M))|F};[YV][DV]T[AG]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}T[AG]YY{M(Oxidation (M))|F};N[DV]YQT{I|L}E{[ES]|[DT]|[{I|L}C]};[Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F};N[DV]Y[AG]T{I|L}E{[ES]|[DT]|[{I|L}C]};[YV][DN][{I|L}T]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}EQ[{I|L}T]YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[WR]YY{M(Oxidation (M))|F} 4.9399;4.9378;3.8782;3.8762;3.8751;3.6187;3.1092;2.9368;2.9348;2.8113 -;+;-;-;-;-;-;-;-;- + 1315 NaN NaN 136748.7 NaN 14766 3810 18574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18579 77.619 NaN 928230 35 0 81898 0.261 + -1 MELHYDCVF 9 103 607.2542640081238 1212.4939750830474 2 607.255126953125 MULTI HCD FTMS 0 0 0 18574 290531.375 0.27732240486058835 -3 0.10256195068359375 5 Carbamidomethyl (C) _MELHYDC(Carbamidomethyl (C))VF_ REV__ENSG00000177728|ENST00000314256|TMEM94;REV__ENST00000581085.5_1_17:73467944-73489290:+|nuORF;REV__ENST00000583071.1_1_17:73488566-73488914:+|nuORF;REV__ENST00000585105.5_1_17:73482215-73489290:+|nuORF;REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant;REV__nc|ENSG00000177728|Q12767-2|TMEM94;REV__nc|ENSG00000177728|Q12767-3|TMEM94 11.640296217721598 0.25978676193971967 2 [QP]{I|L}SVDW 7 -1 42.521 0 0 3.5069 0 0 0 384.0690161771789 384.0690161771789 -0.9492885896588916 0 -0.9492885896588916 0 0 1.0010912013506126 0 0.555462187404089 0 [QP]{I|L}SVDW 3.5069 - 1544 + NaN NaN 231392.5 NaN 14767 3810 18574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18580 77.622 NaN 277230 35 0 38057 0.261 + 7035 FPYSYEVAL 9 76 544.7687251189523 1087.5228973047044 2 544.7687377929688 MULTI HCD FTMS 0 0 0 18574 110586.2578125 0.0450303469620335 17 -0.49175262451171875 6 Unmodified _FPYSYEVAL_ ENSG00000075420|ENST00000415807|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-2|FNDC3B 10.823927491677226 0.26684000660059787 2 {I|L}YA{I|L} 4 6 32.423 0 0 2.9813 0 0 609.2424984949613 0 609.2424984949613 0 17.81865655543953 0 0 0 0.5 0 0 0 {I|L}YA{I|L} 2.9813 - 75 NaN NaN 136787.8 NaN 14768 3810 18574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18582 77.627 NaN 16067000 35 0 4443200 0.327 + 20091 NYIPRFWTF 9 118 622.3162503270299 1242.6179477208598 2 622.3167724609375 MULTI HCD FTMS 0 0 0 18581 11759862 0.9049710040347867 -1 0.0228118896484375 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 171.0860797660465 3.235337749433058E-09 2 NY{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 102.18 0 0 8.223 8.223 89.509 0 0 0 4.194699959806982 4.194699959806982 4.194699959806982 4.194699959806982 0 2.774227503252014 1.6989700043360187 1.7416440611282624 0.2742275032520141 + + NY{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}{M(Oxidation (M))|F}[RP]WT{M(Oxidation (M))|F};[Y{I|L}]NPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}PE[HV]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NY{M(Oxidation (M))|F}{I|L}[RP]WT{M(Oxidation (M))|F};[YN]{I|L}[HV]R{[HG]|PP}T{M(Oxidation (M))|F};[Y{I|L}]GGPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[VS]PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 8.223;7.8855;6.3938;5.7376;5.3671;5.1435;4.9724;4.6901;4.3611;4.2066 +;+;-;-;-;-;-;-;-;- + 6795 + NaN NaN 771360.1 NaN 14769 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18583 77.632 NaN 419080 35 0 25305 0.261 + 19846 NYAWVYYHL 9 83 614.7929572147666 NaN 0 614.7930297851562 PEAK HCD FTMS 0 0 0 18581 83479.203125 0.47579027667720897 -40 0.9620895385742188 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.004376151807685402 2 {M(Oxidation (M))|F}AWVYY 6 4 46.278 0 0 3.7699 0 0 130.0844973379331 265.1304110162719 395.214908354205 0 0 0 0 0 2.4674165578762484 0 0 0 {M(Oxidation (M))|F}AWVYY 3.7699 - 790 + NaN NaN 158216.5 NaN 14770 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18584 77.635 NaN 256780 35 0 16862 0.261 + 964 AYELTQYYF 9 79 599.2769491253474 1196.5393453174947 2 599.2786254882812 MULTI HCD FTMS 0 0 0 18581 83330.84375 0.09993594414293286 10 -0.29840850830078125 3 Unmodified _AYELTQYYF_ ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR 38.175570920033316 0.07371992880350783 2 [Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F} 9 2 + 47.425 0 0 3.9635 3.9635 85.546 0 0 0 7.014224667125717 21.394615430168997 7.014224667125717 9.208187539523749 0 1.7302046884880937 1.3010299956639813 0 0 [Y{I|L}]{[CP]|[EA]}TQYY{M(Oxidation (M))|F};[Y{I|L}]{[CP]|[EA]}T[AG]YY{M(Oxidation (M))|F};[YV][DV]TQYY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}TQYY{M(Oxidation (M))|F};[YV][DV]T[AG]YY{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{[ES]|[DT]|[{I|L}C]}YY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QN]|[E{I|L}]|[KN]}T[AG]YY{M(Oxidation (M))|F};YYNV{[MS]|[{M(Oxidation (M))|F}A]}HH{M(Oxidation (M))|F};[YV][DN][{I|L}T]YY{M(Oxidation (M))|F};[YV]{[QV]|[N{I|L}]|[RA]|[KV]}{[ES]|[DT]|[{I|L}C]}YY{M(Oxidation (M))|F} 3.9635;3.194;3.0616;2.81;2.2921;2.1235;2.0405;1.8438;1.4541;1.2216 -;-;-;+;-;-;-;-;-;- + 681 NaN NaN 128502.6 NaN 14771 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18585 77.638 NaN 168190 35 0 10442 0.261 + 20145 NYITGKGDVF 10 59 557.28380187652 1112.5530508198399 2 557.2843627929688 MULTI HCD FTMS 0 0 0 18581 107982.3515625 1 0 0 4 Unmodified _NYITGKGDVF_ ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1 15.248480904072842 0.3684828712757339 2 [YN]{I|L} 3 7 37.447 0 0 3.3659 0 0 0 719.340551838036 719.340551838036 16.746199743006045 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.3659 + + 54 NaN NaN 117349.4 NaN 14772 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18586 77.642 NaN 103960 35 0 30262 0.261 + 14644 LGFLVSRR 8 32 474.2908657153465 NaN 0 474.2908020019531 PEAK HCD FTMS 0 0 0 18581 74037.328125 0.6136049445401963 5 -0.1507720947265625 5 Unmodified _LGFLVSRR_ ENST00000526920.1_1_17:8079275-8079428:-|nuORF 1.844237919475145 0.38822285293237185 2 {I|L} 1 7 4.6041 0 0 0.4864 0 0 416.2335736164368 414.2264803522094 830.4600539686462 0 0 0 0 0 0 0 0 0 + {I|L} 0.4864 + + 4 + NaN NaN 107462.9 NaN 14773 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18587 77.645 NaN 201330 35 0 19535 0.261 + 31162 VTYTVPKIA 9 45 496.29457135162346 990.5745897700469 2 496.2948303222656 MULTI HCD FTMS 0 0 0 18581 50515.9375 0.5203991000193479 3 -0.09503936767578125 6 Unmodified _VTYTVPKIA_ REV__ENSG00000141568|ENST00000335255|FOXK2;REV__nc|ENSG00000141568|Q01167-2|FOXK2 3.944395688203298 0.32111559684428237 2 {[TV]|[{I|L}S]}YT 4 -1 14.693 0 0 1.4833 0 0 0 523.3247915311689 523.3247915311689 9.208187539523749 0 0 0 0 0 0 0 0 {[TV]|[{I|L}S]}YT 1.4833 + + 12 NaN NaN 121877 NaN 14774 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18588 77.648 NaN 164240 35 0 50760 0.261 + 6039 FPDTPLAL 8 49 437.23932298359153 872.4640930339831 2 437.239501953125 MULTI HCD FTMS 0 0 0 18581 102308.0078125 0.2266693417223597 -10 0.28498077392578125 7 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 19.438996006549623 0.45076845602799126 2 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3322856382784 0 670.3322856382784 0 16.365006360318688 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 31 + NaN NaN 116089.5 NaN 14775 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18589 77.652 NaN 130230 35 0 7690.7 0.261 + 15222 LNVLCGLFG 9 60 468.255346704374 934.496140475548 2 468.2558288574219 MULTI HCD FTMS 0 0 0 18581 55106.390625 1 0 0 8 Unmodified _LNVLCGLFG_ REV__ENSG00000182372|ENST00000331222|CLN8 5.230669730166228 0.3113646817964458 2 {NN|[MP]|[D{I|L}]|[EV]}S 3 -1 25.942 0 0 2.7761 0 0 0 616.3307406554886 616.3307406554886 20.457574905606748 0 0 0 0 0 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}S 2.7761 - 86 NaN NaN 116640 NaN 14776 3811 18581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18591 77.657 NaN 2106400 35 0 296300 0.327 + 9158 HPIETLVDIF 10 94 592.3213089153093 1182.6280648974184 2 592.321533203125 MULTI HCD FTMS 0 0 0 18590 846331.5 0.9044110236419262 2 -0.065582275390625 1 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 56.17704186161178 0.05532499666593632 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}T[{I|L}T]VD{I|L} 9 4 56.34 0 0 4.7639 0 0 0 162.05627018065607 162.05627018065607 8.198624670292887 0 0 0 0 1.9802046884880937 1.6989700043360187 0.6237125054200234 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}T[{I|L}T]VD{I|L} 4.7639 - 1197 NaN NaN 441346.3 NaN 14777 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18592 77.661 NaN 711560 35 0 166650 0.262 + 6486 FPIPGEPGF 9 41 480.74560057336413 959.4766482135283 2 480.74493408203125 MULTI HCD FTMS 0 0 0 18590 445953.8125 0.5690199092265018 11 -0.31800079345703125 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 89.42679046578446 0.004540987215715461 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 9 0 + 80.213 0 0 8.3601 8.3601 97.779 0 0 0 7.147642715192504 67.86683765109139 7.147642715192504 80.2132064533734 0 2.555462187404089 0 0.3054621874040891 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PGEPG{M(Oxidation (M))|F} 8.3601 + + 109 NaN NaN 216278.2 NaN 14778 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18593 77.665 NaN 715950 35 0 76448 0.261 -1 TPQFPDMIL 9 83 539.26788511357 1076.5212172939398 2 539.2679443359375 MULTI HCD FTMS 0 0 0 18590 259720.90625 0.01333304583005467 74 -2.1009445190429688 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 36.12702656103203 0.08312389501731911 2 {I|L}TN[SG]{I|L} 6 -1 33.516 0 0 3.1134 0 0 473.2266333686487 0 473.2266333686487 0 16.860468438865087 0 0 0 0.5 0 0.6643943297944485 0.2742275032520141 {I|L}TN[SG]{I|L} 3.1134 - 487 NaN NaN 203704.1 NaN 14779 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18594 77.668 NaN 266930 35 0 21828 0.261 -1 0 67 465.77746469421976 929.5403764552395 2 465.7776184082031 MULTI HCD FTMS 0 0 0 18590 189022.296875 0.3934410741235423 19 -0.5543594360351562 4 NaN NaN 2 QV 2 -1 4.9485 0 0 0.53236 0 0 387.2472958140102 312.1499117486938 699.397207562704 0 0 0 0 0 0 0 0 0 QV 0.53236 - 20 + NaN NaN 133509.1 NaN 14780 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18595 77.671 NaN 319950 35 0 66792 0.261 + 5476 FIRDKFLL 8 70 526.3187006216177 1050.6228483100354 2 526.3187255859375 MULTI HCD FTMS 0 0 0 18590 159507.890625 0.22736275634840336 7 -0.2032012939453125 5 Unmodified _FIRDKFLL_ REV__ENSG00000137674|ENST00000260228|MMP20 28.486842064014134 0.3788298654084067 2 AT{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 50.974 0 0 4.8518 0 0 487.29243666816564 0 487.29243666816564 0 33.499934467764874 0 0 0 1.2302046884880937 0 0.8494850021680094 0 AT{M(Oxidation (M))|F}{I|L}{I|L} 4.8518 - 254 NaN NaN 139531.3 NaN 14781 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18596 77.675 NaN 234550 35 0 25805 0.262 + -1 VYEFACHAIC 10 50 423.85092052509026 1268.5309321754708 3 423.85076904296875 MULTI HCD FTMS 0 0 0 18590 125713.5 0.8504809762736976 2 -0.065582275390625 6 2 Carbamidomethyl (C) _VYEFAC(Carbamidomethyl (C))HAIC(Carbamidomethyl (C))_ REV__ENSG00000148950|ENST00000532287|IMMP1L;REV__ENST00000527184.5_1_11:31470587-31484823:-|nuORF;REV__ENST00000532624.5_1_11:31474627-31484823:-|nuORF 6.1918466704503565 0.44252927588099017 2 VY 2 -1 44.776 0 0 3.5298 0 0 0 1003.3755550963982 1003.3755550963982 30.17220322351953 0 0 0 0 0.3807196863200844 2 0 0 VY 3.5298 + + 23 + NaN NaN 122719.4 NaN 14782 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18597 77.678 NaN 252930 35 0 14141 0.261 + -1 VYLLSCMSLTC 11 75 645.3024693446902 1288.5903857561802 2 645.3003540039062 MULTI HCD FTMS 0 0 0 18590 119704.28125 1 0 0 7 Carbamidomethyl (C) _VYLLSC(Carbamidomethyl (C))MSLTC_ REV__ENST00000264951.8_1_3:142030117-142030201:-|nuORF 5.731851221503515 0.39378271418728467 2 DKE{M(Oxidation (M))|F} 4 -1 15.406 0 0 1.1956 0 0 751.3827992169937 0 751.3827992169937 0 3.6844000031671698 0 0 0 0.5484550065040282 0 0 0 DKE{M(Oxidation (M))|F} 1.1956 - 142 NaN NaN 128209.6 NaN 14783 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18598 77.681 NaN 226040 35 0 23606 0.261 -1 LMYIFAILGF 10 53 602.3268616995917 NaN 0 602.3131713867188 PEAK HCD FTMS 0 0 0 18590 16206.5556640625 0.5898583260611862 -8 0.2289276123046875 8 Oxidation (M) _LM(Oxidation (M))YIFAILGF_ ENSG00000152705|ENST00000282611|CATSPER3 7.910154910731844 0.33341429274560913 2 P{I|L}M{I|L} 4 -1 9.897 0 0 0.82294 0 0 526.267906893521 219.0774325006469 745.3453393941678 0 0 0 0 0 0 0 0 0 P{I|L}M{I|L} 0.82294 - 49 + NaN NaN 115497.3 NaN 14784 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18599 77.685 NaN 130000 35 0 17830 0.261 + 7257 FTAAFFGRWY 10 44 633.3073717059008 1264.6001904786015 2 633.30810546875 MULTI HCD FTMS 0 0 0 18590 66792.859375 0.7944941128628616 1 -0.03607940673828125 9 Unmodified _FTAAFFGRWY_ REV__ENSG00000114859|ENST00000265593|CLCN2;REV__ENSG00000188037|ENST00000343257|CLCN1;REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF;REV__nc|ENSG00000114859|P51788-3|CLCN2;REV__nc|ENSG00000114859|P51788-4|CLCN2;REV__nc|ENSG00000114859|P51788-5|CLCN2 13.042465956692817 0.38911719078024076 2 {I|L}{M(Oxidation (M))|F}E 3 -1 26.198 0 0 2.0716 0 0 857.387257786255 0 857.387257786255 0 20.713337517843655 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}E 2.0716 - 7 NaN NaN 101986.7 NaN 14785 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18600 77.688 NaN 270160 35 0 37250 0.261 + 7457 FVTWIEGVM 9 62 549.2706956796301 1096.52683842606 2 549.270263671875 MULTI HCD FTMS 0 0 0 18590 114289.84375 0.7937577610465268 -1 0.02945709228515625 10 Oxidation (M) _FVTWIEGVM(Oxidation (M))_ ENSG00000122194|ENST00000308192|PLG 81.61307344734483 0.005330412723537057 2 TW{I|L}ER{M(Oxidation (M))|F} 6 4 63.135 0 0 5.7577 0 0 246.1366902082047 0 246.1366902082047 0 49.947274948966935 0 0 0 2.774227503252014 0 1.1747425010840047 0 TW{I|L}ER{M(Oxidation (M))|F} 5.7577 - 257 NaN NaN 135841 NaN 14786 3812 18590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18602 77.693 NaN 2383200 35 0 233380 0.327 + 13565 KYPENFFLL 9 123 585.8131605635726 1169.6117681939452 2 585.8137817382812 MULTI HCD FTMS 0 0 0 18601 1641235.375 0.00834285147006699 88 -2.4899673461914062 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 74.19965305603844 0.007729275404663812 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 85.217 0 0 7.2859 7.2859 89.732 0 0 0 5.737862141609185 44.34845618806761 5.737862141609185 8.57840941039747 0 2.5356668758921828 0 0 1.3996498648046138 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.2859;6.5525;6.4986;6.4586;5.7652;5.7652;5.7251;5.6713;5.5078;5.0284 +;-;-;-;-;-;-;-;-;- + 7658 NaN NaN 461997 NaN 14787 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18603 77.697 NaN 520100 35 0 93223 0.261 + 11241 IYLFWGIFP 9 87 578.3151106416535 NaN 0 578.3005981445312 PEAK HCD FTMS 0 0 0 18601 17276.576171875 0.08133161566373445 10 -0.28192138671875 2 Unmodified _IYLFWGIFP_ REV__ENST00000473262.5_1_3:124802736-124896678:-|nuORF 14.581692164780916 0.22376707489839515 2 V{I|L}TDTPTP 8 -1 36.139 0 0 3.1299 0 0 165.10732122168173 162.05611597232658 327.16343719400834 0 0 0 0 0 0 0 0.8494850021680094 0 V{I|L}TDTPTP 3.1299 - 797 + NaN NaN 169269.5 NaN 14788 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18604 77.701 NaN 423010 35 0 44717 0.261 + 3293 EEFGQAFSF 9 65 531.2323984929603 1060.4502440527206 2 531.232666015625 MULTI HCD FTMS 0 0 0 18601 243005.109375 0.1784019663264192 6 -0.16712188720703125 3 Unmodified _EEFGQAFSF_ ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF 129.77232118876745 0.0006187813247758304 2 S{M(Oxidation (M))|F}AS[HN]S{M(Oxidation (M))|F} 8 6 74.954 0 0 7.0681 0 0 165.08025893769837 0 165.08025893769837 0 61.56418474327175 0 0 0 1.3252574989159953 0 1.9049471895720984 0.8494850021680094 S{M(Oxidation (M))|F}AS[HN]S{M(Oxidation (M))|F} 7.0681 - 654 + NaN NaN 159578.9 NaN 14789 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18605 77.704 NaN 290470 35 0 19757 0.261 + 24444 RYLDLFTNF 9 78 594.8060392061491 1187.597525479098 2 594.8054809570312 MULTI HCD FTMS 0 0 0 18601 200364.71875 0.2407455580127815 7 -0.199951171875 4 Unmodified _RYLDLFTNF_ ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 43.981846655682396 0.04706587046877104 2 D{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 6 3 53.677 0 0 4.5198 0 0 432.24632460761876 0 432.24632460761876 0 41.99478448944497 0 0 0 1.3807196863200843 0 0.5 0 + D{I|L}{M(Oxidation (M))|F}TN{M(Oxidation (M))|F} 4.5198 + + 245 NaN NaN 129527.6 NaN 14790 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18606 77.707 NaN 475650 35 0 87979 0.261 + 33277 YFLKGVLVF 9 81 543.3233757198498 1084.6321985064994 2 543.3233032226562 MULTI HCD FTMS 0 0 0 18601 324183.25 0.8679912282705454 -3 0.088348388671875 5 Unmodified _YFLKGVLVF_ ENSG00000031698|ENST00000234677|SARS1 64.23631603340823 0.01165516075559909 2 {I|L}KR{I|L}V{M(Oxidation (M))|F} 6 4 56.419 0 0 5.2017 0 0 310.131649697763 0 310.131649697763 0 30.733134811479204 0 0 0 2.1549471895720984 0 0 0 {I|L}KR{I|L}V{M(Oxidation (M))|F} 5.2017 - 269 NaN NaN 167087.8 NaN 14791 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18607 77.711 NaN 169380 35 0 10104 0.261 -1 KMKFSNEVF 9 63 573.286554001384 1144.558555069568 2 573.2872924804688 MULTI HCD FTMS 0 0 0 18601 59563.94140625 0.05666670724808512 19 -0.5444869995117188 6 Oxidation (M) _KM(Oxidation (M))KFSNEVF_ ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9 9.38312468134398 0.279288223203164 2 V{M(Oxidation (M))|F} 2 -1 28.583 0 0 2.4973 0 0 880.4157708924345 0 880.4157708924345 0 13.406206186877938 0 0 0 0.7614393726401688 0 0 0 V{M(Oxidation (M))|F} 2.4973 + + 180 NaN NaN 122865.6 NaN 14792 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18608 77.714 NaN 133750 35 0 8312.2 0.264 -1 0 44 408.67527439266047 815.335995852121 2 408.6756286621094 MULTI HCD FTMS 0 0 0 18601 83228.3515625 1 0 0 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.7146 0 0 650.2573500775101 0 650.2573500775101 0 6.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7146 - 22 + NaN NaN 109859.6 NaN 14793 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18609 77.717 NaN 232210 35 0 29589 0.261 -1 LQKMAISTTW 10 73 597.8108491632994 NaN 0 597.8221435546875 PEAK HCD FTMS 0 0 0 18601 55135.97265625 0.9743911491640799 -4 0.12204742431640625 8 Oxidation (M) _LQKM(Oxidation (M))AISTTW_ ENST00000477239.1_1_20:23350773-23351022:+|nuORF 13.614867670302875 0.3285318492764617 2 TT 2 -1 25.217 0 0 2.1126 0 0 787.4226799166394 201.0665224664672 988.4892023831065 0 0 0 0 0 1.4247425010840047 0 0 0 TT 2.1126 + + 44 + NaN NaN 130470.3 NaN 14794 3813 18601 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18611 77.722 NaN 5619800 35 0 970980 0.327 + 13802 KYPSPFFVF 9 95 566.2972883717671 1130.580023810334 2 566.2977905273438 MULTI HCD FTMS 0 0 0 18610 3965349.75 0.035672955066512635 19 -0.554534912109375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 134.295615338601 0.00034446139420701925 2 [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 92.559 0 0 8.1869 8.1869 93.557 0 0 0 11.320480343695834 11.320480343695834 11.320480343695834 11.320480343695834 0 2.8494850021680094 0 1.3851518780601921 0.7059771852360797 + + [YK]PSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KSP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AASP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SKP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]P{M(Oxidation (M))|F}SAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}P{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}SAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8.1869;7.1856;7.0423;6.2165;6.1228;6.0636;5.5293;5.2187;5.1526;4.7196 +;+;-;-;-;-;-;-;-;- + 5505 NaN NaN 598770 NaN 14795 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18612 77.727 NaN 3286100 35 0 496240 0.261 + 32274 VYTVVDEMFL 10 113 616.3000499544922 1230.5855469757844 2 616.3004150390625 MULTI HCD FTMS 0 0 0 18610 1627130.125 0.4784981960340318 2 -0.05573272705078125 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 214.13773924641143 6.677275740084004E-25 2 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 126.42 0 0 10.274 10.274 92.076 0 0 0 5.981362441963327 5.76606256887672 5.76606256887672 5.76606256887672 0 3.2302046884880937 1.6989700043360187 2.853917193908117 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]SVVD{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F};[YV]TVVD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};{I|L}YSVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVD{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 10.274;9.805;9.7875;9.6018;9.565;9.3189;9.1333;9.1158;8.8442;8.6472 -;-;+;-;-;-;-;-;-;- + 8687 NaN NaN 584609 NaN 14796 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18613 77.73 NaN 886380 35 0 157500 0.261 + -1 NYLKGHPMTAQ 11 102 638.3112473458033 1274.6079417584065 2 638.3114013671875 MULTI HCD FTMS 0 0 0 18610 566791.375 0.5591672001222333 2 -0.05573272705078125 3 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 33.4449034751529 0.1791669456720762 2 NY{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 -1 + 75.094 0 0 5.8915 5.8915 89.911 0 0 0 12.350432079754569 12.350432079754569 12.350432079754569 12.350432079754569 0 2.2376954943324545 1.6989700043360187 0.9802046884880937 0.2614393726401688 NY{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}ER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}E[HQ]{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]};NY{I|L}E[HA]G{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]};[{M(Oxidation (M))|F}T]{[CA]|SS}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}GQ{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NYY{[NV]|[RG]}{[QV]|[N{I|L}]|[RA]|[KV]}QT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAER{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};NY{I|L}E[HQ][Q{I|L}][KC];[{M(Oxidation (M))|F}T]{[QN]|[E{I|L}]|[KN]}G[AG]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 5.8915;4.9226;3.4059;3.2588;2.9042;2.726;2.7049;2.5254;2.055;2.007 -;-;-;-;-;-;-;-;-;- 1573 + NaN NaN 228370.8 NaN 14797 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18614 77.734 NaN 760540 35 0 90238 0.261 + 18676 MYKAEDEFA 9 90 552.2393654530946 NaN 0 552.2578125 PEAK HCD FTMS 0 0 0 18610 10912.216796875 0.4296986609177187 1 -0.02620697021484375 4 Unmodified _MYKAEDEFA_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 26.88365393820708 0.14119366324382274 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}QDG 6 -1 41.085 0 0 3.7266 0 0 131.05871755006473 261.0884188287719 392.14713637883665 0 0 0 0 0 0 0 0.6505149978319906 0.8829131673969606 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}QDG 3.7266 - 1166 + NaN NaN 207656.8 NaN 14798 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18615 77.737 NaN 234730 35 0 45990 0.264 -1 0 68 404.1881635092436 806.3617740852873 2 404.1882629394531 MULTI HCD FTMS 0 0 0 18610 150394.65625 0.37871737038927406 12 -0.347686767578125 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.4378 0 0 641.2825637354811 0 641.2825637354811 0 6.109243748081781 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4378 - 9 + NaN NaN 138169 NaN 14799 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18616 77.74 NaN 357240 35 0 24613 0.261 + 6299 FPFPMDNQF 9 78 579.7494603753254 1157.4843678174507 2 579.7498779296875 MULTI HCD FTMS 0 0 0 18610 139928.703125 0.6019339722416789 19 -0.554534912109375 6 Oxidation (M) _FPFPM(Oxidation (M))DNQF_ ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8;nc|ENSG00000101773|Q99708-3|RBBP8 54.773552608820026 0.024892918755467567 2 {M(Oxidation (M))|F}P[DN]Q{M(Oxidation (M))|F} 6 3 36.999 0 0 3.1965 0 0 391.1906910626969 0 391.1906910626969 0 25.673647750663804 0 0 0 1.3494850021680094 0 0 0.6549471895720984 {M(Oxidation (M))|F}P[DN]Q{M(Oxidation (M))|F} 3.1965 - 160 NaN NaN 154294.5 NaN 14800 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18617 77.744 NaN 142120 35 0 13893 0.261 + 7474 FVVFFAIYL 9 58 559.8159851679305 NaN 0 559.8162231445312 PEAK HCD FTMS 0 0 0 18610 20478.4609375 0.23287681212403677 1 -0.02620697021484375 7 Unmodified _FVVFFAIYL_ ENSG00000206536|ENST00000383695|OR5K3;ENSG00000231861|ENST00000427338|OR5K2;ENSG00000232382|ENST00000642057|OR5K1 20.871210003555333 0.18155047927120396 2 Y{I|L} 2 7 20.969 0 0 1.8762 0 0 131.09432538277252 707.3525185743971 838.4468439571697 0 0 0 0 0 1 0 0 0 + Y{I|L} 1.8762 + + 52 + NaN NaN 126148.4 NaN 14801 3814 18610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18619 77.748 NaN 1741900 35 0 301850 0.327 + 9159 HPIETLVDIF 10 87 592.3213089153093 1182.6280648974184 2 591.8045654296875 MULTI HCD FTMS 0 0 0 18618 128814.875 0.867284920145824 2 -0.05240631103515625 1 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 17.11289562659939 0.35104376501799556 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QD{I|L}{M(Oxidation (M))|F} 6 7 38.722 0 0 3.2742 0 0 367.2221260470049 0 367.2221260470049 0 -3.4247782126794846 -3.4247782126794846 0 0 0.6861818737241735 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QD{I|L}{M(Oxidation (M))|F} 3.2742 - 1006 NaN NaN 360963.4 NaN 14802 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18620 77.753 NaN 761120 35 0 159750 0.261 + 1730 CITSPFRWTF 10 93 629.3063901670442 1256.5982274008884 2 629.3057250976562 MULTI HCD FTMS 0 0 0 18618 559079.5 0.4823583538044056 3 -0.085205078125 2 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 40.23920728925047 0.14333095755487663 2 {I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 7 -1 57.657 0 0 4.5884 0 0 291.0852723305589 0 291.0852723305589 0 25.543132534128574 0 0 0 2.0994850021680094 0 0.4247425010840047 0 {I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 4.5884 - 833 NaN NaN 208947.4 NaN 14803 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18621 77.756 NaN 544820 35 0 100510 0.261 + 35764 YYMDYLAAL 9 57 569.7595712656814 1137.5045895981627 2 569.759765625 MULTI HCD FTMS 0 0 0 18618 360868.71875 0.49221416002200086 -3 0.09178924560546875 3 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 48.345845343767074 0.03388484103555672 2 {I|L}AA{I|L} 4 5 46.938 0 0 4.1264 0 0 751.2522914919157 0 751.2522914919157 0 33.750612633917 0 0 0 1.5 0 0 0 + {I|L}AA{I|L} 4.1264 + + 43 NaN NaN 180449.5 NaN 14804 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18622 77.76 NaN 293150 35 0 13590 0.262 + 12412 KPGKGARAE 9 67 457.2642804947058 912.5140080562117 2 457.2642822265625 MULTI HCD FTMS 0 0 0 18618 334024.90625 0.444288032467851 59 -1.675537109375 4 Unmodified _KPGKGARAE_ GRIN3A|p.E115K|1|0.15|ENSG00000198785|chr9:101737637-101737637|C/T|missense_variant 3.2813086475875832 0.32614229037259 2 Q 1 9 10.841 0 0 1.1881 0 0 370.21903842906164 411.2230318658813 781.4420702949429 0 0 0 0 0 0.7742275032520141 0 0 0 Q 1.1881 - 27 + NaN NaN 130936.7 NaN 14805 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18623 77.763 NaN 259950 35 0 33521 0.261 -1 MPMNVADLI 9 55 510.24856067263147 1018.482568412063 2 510.24871826171875 MULTI HCD FTMS 0 0 0 18618 121108.0703125 0.3558146646065215 7 -0.2100067138671875 5 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 29.081581746732265 0.1154664336125038 2 AD{I|L}{I|L} 4 -1 45.745 0 0 4.4915 0 0 588.2386305884041 0 588.2386305884041 0 32.74706718454313 0 0 0 1.3807196863200843 0 0 0 AD{I|L}{I|L} 4.4915 + + 85 NaN NaN 138840 NaN 14806 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18624 77.766 NaN 736270 35 0 67262 0.261 + 6255 FPFAVANQL 9 87 503.7716250698475 1005.528697206495 2 503.771728515625 MULTI HCD FTMS 0 0 0 18618 178936.984375 0.47079782948913107 -3 0.09178924560546875 6 Unmodified _FPFAVANQL_ ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 85.35673624503755 0.00464763827098139 2 ANAVAME{I|L} 8 5 59.072 0 0 5.8747 0 0 188.11578566718907 0 188.11578566718907 0 44.46771415010268 0 0 0 2.048455006504028 0 0.3252574989159953 1.0356668758921828 ANAVAME{I|L} 5.8747 - 544 NaN NaN 202501.5 NaN 14807 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18625 77.77 NaN 175150 35 0 13866 0.261 + 6774 FPQYFEATF 9 59 575.2663842343247 1148.5182155354494 2 575.2656860351562 MULTI HCD FTMS 0 0 0 18618 79786.3515625 0.7578526832146809 10 -0.2852630615234375 7 Unmodified _FPQYFEATF_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense 24.020572477871973 0.15282392193088168 2 VYQPE 5 -1 38.346 0 0 3.3388 0 0 514.2079334943375 0 514.2079334943375 0 21.179315557082386 0 0 0 0.75 0 0 0.3054621874040891 VYQPE 3.3388 - 130 NaN NaN 117894.8 NaN 14808 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18626 77.773 NaN 133000 35 0 29495 0.264 -1 METSCPLCTF 10 48 415.8349714403553 1244.4830849212658 3 416.1690673828125 MULTI HCD FTMS 0 0 0 18618 11351.6923828125 0.33768012111724593 1 -0.0295257568359375 8 2 Carbamidomethyl (C) _METSC(Carbamidomethyl (C))PLC(Carbamidomethyl (C))TF_ ENST00000497856.6_1_5:112214403-112214505:-|nuORF 0.776531954647913 0.4711933975711956 2 D 1 -1 7.3464 0 0 0.59031 0 0 524.3022510363033 602.1374605768186 1126.439711613122 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.59031 - 3 + NaN NaN 106965.9 NaN 14809 3815 18618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18628 77.778 NaN 5717800 35 0 1563400 0.327 + 20092 NYIPRFWTF 9 100 622.3162503270299 1242.6179477208598 2 622.3165283203125 MULTI HCD FTMS 0 0 0 18627 3908771.75 0.30079648002164566 4 -0.114715576171875 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 118.0683919894846 0.0016252157255221692 2 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 92.775 0 0 7.4661 7.4661 95.303 0 0 0 6.108995551440003 6.108995551440003 6.108995551440003 38.099147890663744 0 2.548455006504028 1.6989700043360187 0.4247425010840047 1.0189301784845295 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[VS]PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}P[VG]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[MT]VRR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}RR{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};{[RE]|[WV]}{[QG]|[NA]}ERP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PERPWW;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PE[VG]P{[QD]|[EN]|[WG]|[KD]|[RS]}E;[MT]VRR{M(Oxidation (M))|F}{[SA]|[TG]}E{M(Oxidation (M))|F} 7.4661;4.4;3.9417;3.659;3.6183;3.4397;3.3607;3.3041;2.8146;2.7803 +;-;-;-;-;-;-;-;-;- + 1948 NaN NaN 485282.2 NaN 14810 3816 18627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18629 77.782 NaN 1204900 35 0 108640 0.261 + -1 CYMSAHPELF 10 112 607.2542640081238 1212.4939750830474 2 607.2547607421875 MULTI HCD FTMS 0 0 0 18627 705362.8125 0.6732935864903687 3 -0.08188629150390625 2 Oxidation (M) _CYM(Oxidation (M))SAHPELF_ REV__ENSG00000162594|ENST00000347310|IL23R;REV__nc|ENSG00000162594|Q5VWK5-3|IL23R;REV__nc|ENSG00000162594|Q5VWK5-4|IL23R 10.823927491677226 0.4098686510432541 2 [QP]{I|L}SVDW{M(Oxidation (M))|F} 8 -1 44.633 0 0 3.6811 0 0 0 237.00153528385002 237.00153528385002 3.3248207551416797 0 0 0 0 1.0356668758921828 0 0.6307196863200843 0 [QP]{I|L}SVDW{M(Oxidation (M))|F} 3.6811 - 1412 + NaN NaN 272819.5 NaN 14811 3816 18627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18630 77.786 NaN 325050 35 0 25164 0.261 + -1 YVARCDREDC 10 75 643.7655264831868 1285.5165000331735 2 643.766357421875 MULTI HCD FTMS 0 0 0 18627 124889.5 0.7889768488042002 -2 0.05573272705078125 3 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 13.90604991867851 0.3810395177745597 2 [YV]AS{M(Oxidation (M))|F}G[Y{M(Oxidation (M))|F}]W{M(Oxidation (M))|F} 10 -1 + 71.08 0 0 5.5293 5.5293 83.218 0 0 0 10.01016889216956 42.70303756120384 10.01016889216956 0.17220322351953143 0 2 1.6989700043360187 0.4247425010840047 0 [YV]AS{M(Oxidation (M))|F}G[Y{M(Oxidation (M))|F}]W{M(Oxidation (M))|F};[YV]AS{M(Oxidation (M))|F}G[WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]AS{M(Oxidation (M))|F}G[Y{M(Oxidation (M))|F}]{[{M(Oxidation (M))|F}D]|MM}A;[YV]A[YQ][Y{M(Oxidation (M))|F}]W{M(Oxidation (M))|F};[YV]A[YQ][WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.5293;5.5159;4.3481;3.0596;3.0462 -;-;-;-;- 278 NaN NaN 134915.7 NaN 14812 3816 18627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18631 77.789 NaN 179710 35 0 14721 0.263 + 28315 TMASVPALQL 10 55 515.782296089064 NaN 0 515.7816162109375 PEAK HCD FTMS 0 0 0 18627 48102.21875 0.25341957411275134 12 -0.34442138671875 4 Unmodified _TMASVPALQL_ ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 32.78568957990786 0.1770653276021985 2 Q{I|L}AC(Carbamidomethyl (C)) 4 9 36.696 0 0 3.5643 0 0 131.0951655693829 423.2275484674438 554.3227140368267 0 0 0 0 0 1.5 0 0 0.3252574989159953 Q{I|L}AC(Carbamidomethyl (C)) 3.5643 - 79 + NaN NaN 121769.8 NaN 14813 3816 18627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18632 77.793 NaN 294700 35 0 35537 0.261 + 26048 SPEPLEAIL 9 67 484.76861824797527 967.5226835627506 2 484.76849365234375 MULTI HCD FTMS 0 0 0 18627 58645.58203125 1 0 0 5 Unmodified _SPEPLEAIL_ ENSG00000119866|ENST00000642384|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;nc|ENSG00000119866|Q9H165-8|BCL11A 10.823927491677226 0.26684000660059787 2 A{I|L}{I|L} 3 6 22.792 0 0 2.3557 0 0 652.3079506060361 0 652.3079506060361 0 11.57689935101807 0 0 0 0.5 0 0 0 + A{I|L}{I|L} 2.3557 + + 213 NaN NaN 140210.8 NaN 14814 3816 18627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18633 77.796 NaN 132030 35 0 17732 0.261 + 19431 NPLWPDTTL 9 44 528.7716404845037 NaN 0 528.7715454101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NPLWPDTTL_ ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 8.745405648335112 0.25286782695573473 2 T 1 8 10.485 0 0 0.9933 0 0 131.09059076545105 820.3617647760374 951.4523555414885 0 0 0 0 0 0.5 0 0 0 + T 0.9933 + + 2 + NaN NaN 104841.8 NaN 14815 3816 18627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18635 77.801 NaN 622840 35 0 125430 0.327 + 1427 AYQLMVDVF 9 58 551.2678555593174 1100.5211581854346 2 551.2682495117188 MULTI HCD FTMS 0 0 0 18634 524605.25 0.597287229050059 -1 0.02288055419921875 1 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 99.79894945604345 0.0042691968066200965 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 9 0 + 81.138 0 0 7.3727 7.3727 92.707 0 0 0 2.990984809501697 37.82705968907152 2.990984809501697 13.015384402724592 0 2.8494850021680094 0 0.3252574989159953 0.3807196863200844 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};[DV]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QT]V{M(Oxidation (M))|F};[DV]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{[QS]|[NT]}{M(Oxidation (M))|F};[DV]V{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}T]N;{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}P]{M(Oxidation (M))|F}[QT]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[{I|L}P]{M(Oxidation (M))|F}{I|L}{[QS]|[NT]}{M(Oxidation (M))|F};[DV]V{M(Oxidation (M))|F}[VP]{[CP]|[EA]}[EP] 7.3727;6.19;5.83;4.6529;3.765;2.2357;1.9989;1.111;0.96145 +;-;-;-;-;-;-;-;- + 364 NaN NaN 184514.8 NaN 14816 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18636 77.805 NaN 1026200 35 0 121140 0.261 + 6487 FPIPGEPGF 9 63 480.74560057336413 959.4766482135283 2 480.7460021972656 MULTI HCD FTMS 0 0 0 18634 407278.5 0.5196716982880504 16 -0.475921630859375 2 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 60.38955033654506 0.017036522530421875 2 {[DA]|[EG]}{I|L}AE{I|L}DT 8 7 64.568 0 0 6.7295 0 0 0 128.0669319758554 128.0669319758554 19.36858074702407 0 0 0 0 2.309894379144197 1.5228787452803376 0.6421590589602533 0 {[DA]|[EG]}{I|L}AE{I|L}DT 6.7295 - 414 NaN NaN 245133.2 NaN 14817 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18637 77.809 NaN 418310 35 0 63872 0.261 -1 TPQFPDMIL 9 46 539.26788511357 1076.5212172939398 2 539.268310546875 MULTI HCD FTMS 0 0 0 18634 229444.84375 0.011778792325034416 79 -2.2342758178710938 3 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 22.736283301280096 0.1639198954644489 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3416952640066 0 832.3416952640066 0 10 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 36 NaN NaN 161701.1 NaN 14818 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18638 77.812 NaN 185700 35 0 23877 0.261 -1 0 65 465.77746469421976 929.5403764552395 2 465.7775573730469 MULTI HCD FTMS 0 0 0 18634 173781.765625 0.361718620823873 24 -0.6919937133789062 4 NaN NaN 2 V 1 -1 2.4743 0 0 0.26618 0 0 559.321181974574 268.1238192193969 827.4450011939709 0 0 0 0 0 0 0 0 0 V 0.26618 - 21 + NaN NaN 130194.2 NaN 14819 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18639 77.815 NaN 315770 35 0 35748 0.261 + -1 WYMITVVLC 9 76 572.2838167724263 1142.5530806116526 2 572.2835083007812 MULTI HCD FTMS 0 0 0 18634 54581.37109375 0.4013325043680946 1 -0.03279876708984375 5 Oxidation (M) _WYM(Oxidation (M))ITVVLC_ REV__ENSG00000204624|ENST00000294484|DISP3 7.910154910731844 0.2910521888787154 2 [W{M(Oxidation (M))|F}]K[KG]SY{NN|[MP]|[D{I|L}]|[EV]} 9 -1 + 18.872 0 0 1.6518 1.6518 86.94 0 0 0 4.514224667125717 3.387722355916413 3.387722355916413 17.51181001601921 0 1.742992819099939 0 0.25 0 [W{M(Oxidation (M))|F}]K[KG]SY{NN|[MP]|[D{I|L}]|[EV]};N[YT]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}RC[{I|L}V];NE[PA]{[QN]|[E{I|L}]|[KN]}RC[{I|L}V] 1.6518;0.11907;0.0097217 -;-;- 188 + NaN NaN 143004.7 NaN 14820 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18640 77.819 NaN 301040 35 0 19108 0.261 + 22786 QYLDNLLVRF 10 61 640.8534768553919 1279.6924007775838 2 640.8534545898438 MULTI HCD FTMS 0 0 0 18634 223361.953125 0.6908421246549937 -3 0.07861328125 6 Unmodified _QYLDNLLVRF_ ENSG00000121879|ENST00000263967|PIK3CA 43.981846655682396 0.11085276043338313 2 [YQ]{I|L}DN{I|L}{I|L}VR{M(Oxidation (M))|F} 10 0 + 49.966 0 0 3.9045 3.9045 84.729 0 0 0 2.538012203482296 9.320815507387863 2.538012203482296 9.164539485499255 0 1.1549471895720984 0 0 0 + + [YQ]{I|L}DN{I|L}{I|L}VR{M(Oxidation (M))|F};[YQ]{I|L}DGG{I|L}{I|L}VR{M(Oxidation (M))|F};[YQ]{I|L}D[{I|L}V]QVR{M(Oxidation (M))|F};[YQ]{I|L}D[{I|L}V][AG]VR{M(Oxidation (M))|F} 3.9045;3.1884;2.9855;2.2693 +;-;-;- + 350 + NaN NaN 154033.3 NaN 14821 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18641 77.822 NaN 198610 35 0 16656 0.263 + 27972 TFDLTVVSY 9 52 522.7659943400811 1043.517435746962 2 522.7661743164062 MULTI HCD FTMS 0 0 0 18634 55857.5625 0.7231142212661746 -1 0.02288055419921875 7 Unmodified _TFDLTVVSY_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 43.85829265575387 0.04763305254408404 2 VVSY 4 5 50.433 0 0 4.833 0 0 577.2742813550303 0 577.2742813550303 0 36.938200260161125 0 0 0 1.8494850021680094 0 0 0 + VVSY 4.833 + + 99 NaN NaN 122224.6 NaN 14822 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18642 77.825 NaN 162740 35 0 24044 0.261 + -1 PFICFLDA 8 66 491.73685868945483 981.4591644457097 2 491.73809814453125 MULTI HCD FTMS 0 0 0 18634 54260.5 0.5163507046815783 12 -0.36103057861328125 8 Carbamidomethyl (C) _PFIC(Carbamidomethyl (C))FLDA_ REV__ENST00000515408.5_1_5:112312601-112321662:+|nuORF 20.871210003555333 0.44023077629866025 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[YG]A{I|L} 7 -1 44.938 0 0 4.5787 0 0 0 183.0374163820858 183.0374163820858 23.334456814179774 0 0 0 0 1.8252574989159953 1.5228787452803376 0.3252574989159953 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[YG]A{I|L} 4.5787 - 71 NaN NaN 123018.4 NaN 14823 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18643 77.829 NaN 65901 35 0 5355.3 0.261 + 28709 TSRDVKRL 8 37 487.7905841969933 NaN 0 487.7905578613281 PEAK HCD FTMS 0 0 0 18634 23508.908203125 0.32914812036087127 -1 0.02288055419921875 9 Unmodified _TSRDVKRL_ ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4 1.844237919475145 0.38822285293237185 2 {I|L} 1 7 5.4846 0 0 0.56335 0 0 503.3858120934022 354.0790194147094 857.4648315081116 0 0 0 0 0 0 0 0 0 + {I|L} 0.56335 + + 3 + NaN NaN 95743.8 NaN 14824 3817 18634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18645 77.834 NaN 2634900 35 0 216440 0.327 + 13566 KYPENFFLL 9 115 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 18644 1503828.875 0.007644376383565909 93 -2.61492919921875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 69.28 0 0 5.9233 5.9233 88.414 0 0 0 4.894549897933871 36.49908846104291 4.894549897933871 9.208187539523749 0 2.322682509756042 0 0 1.0189301784845295 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[HG]|PP}PPEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NQE{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[HG]|PP}PPEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}E{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}NQE{M(Oxidation (M))|F}{I|L}{I|L} 5.9233;5.136;4.987;4.1997;4.1148;4.043;3.4968;3.48;3.4723;3.3905 +;-;-;-;-;-;-;-;-;- + 7762 NaN NaN 415274.8 NaN 14825 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18646 77.838 NaN 264310 35 0 105530 0.263 + 6040 FPDTPLAL 8 50 437.23932298359153 872.4640930339831 2 437.2393493652344 MULTI HCD FTMS 0 0 0 18644 324902.9375 0.7198413549578272 -3 0.085205078125 2 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 26.34127834903884 0.3999841173197873 2 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3324992613253 0 670.3324992613253 0 16.365006360318688 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 29 + NaN NaN 130871.6 NaN 14826 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18647 77.842 NaN 245180 35 0 41168 0.261 + -1 STGTIFLCTLL 11 61 613.3273026617287 1224.6400523902573 2 613.327392578125 MULTI HCD FTMS 0 0 0 18644 99078.6328125 0.860102840155976 1 -0.02620697021484375 3 Carbamidomethyl (C) _STGTIFLC(Carbamidomethyl (C))TLL_ REV__ENSG00000138315|ENST00000334011|OIT3;REV__nc|ENSG00000138315|Q8WWZ8-2|OIT3 17.11289562659939 0.30797719109864646 2 W[TA]Q{I|L}{I|L} 6 -1 32.669 0 0 2.6676 0 0 494.2707662326685 0 494.2707662326685 0 18.20493438421167 0 0 0 0.9247425010840047 0 0.8807196863200843 0 W[TA]Q{I|L}{I|L} 2.6676 - 91 NaN NaN 131875.9 NaN 14827 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18648 77.845 NaN 231320 35 0 14208 0.262 + 22017 QFSDVLVTI 9 67 511.28146898885757 1020.5483850445152 2 511.281982421875 MULTI HCD FTMS 0 0 0 18644 109174.40625 1 0 0 4 Unmodified _QFSDVLVTI_ REV__ENSG00000175294|ENST00000312106|CATSPER1 38.175570920033316 0.07371992880350783 2 {I|L}VT{I|L} 4 -1 43.443 0 0 4.2569 0 0 576.2542583399384 0 576.2542583399384 0 36.36500636031869 0 0 0 1.5 0 0.3494850021680094 0 {I|L}VT{I|L} 4.2569 + + 43 NaN NaN 122537.2 NaN 14828 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18649 77.848 NaN 297380 35 0 20868 0.261 + 2156 DHILIAFSF 9 60 531.7844638427932 1061.5543747523864 2 531.2805786132812 MULTI HCD FTMS 0 0 0 18644 74278.1953125 1 0 0 5 Unmodified _DHILIAFSF_ REV__ENSG00000075568|ENST00000186436|TMEM131;REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant 16.942295170755138 0.21397866736869717 2 S{I|L}[K{I|L}]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 -1 47.256 0 0 4.4516 0 0 150.06055258617386 0 150.06055258617386 0 31.057743964882714 0 0 0 0 0 0.7614393726401688 0 S{I|L}[K{I|L}]A{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 4.4516 - 211 + NaN NaN 145706.5 NaN 14829 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18650 77.852 NaN 214480 35 0 27620 0.261 -1 LYMPKLLYF 9 53 602.3268616995917 NaN 0 602.3147583007812 PEAK HCD FTMS 0 0 0 18644 15782.6787109375 0.574430782096329 -4 0.11141204833984375 6 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 7.910154910731844 0.25691533546754686 2 Y 1 -1 11.99 0 0 0.99695 0 0 165.10711748386512 871.4714449518186 1036.5785624356838 0 0 0 0 0 0.5 0 0 0 Y 0.99695 + + 14 + NaN NaN 137629.6 NaN 14830 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18651 77.855 NaN 141020 35 0 35645 0.261 -1 MMFPWKQLI 9 44 634.31395871473 1266.61336449626 2 634.3139038085938 MULTI HCD FTMS 0 0 0 18644 79707.6796875 0.9031982918647482 -3 0.085205078125 7 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))M(Oxidation (M))FPWKQLI_ CNTN3|p.N375Dfs*5|1|0.11|ENSG00000113805|chr3:74364557-74364558|-/CCTACATC|frameshift_variant;ENSG00000113805|ENST00000263665|CNTN3 7.289230182591677 0.29575926068275815 2 AQ{I|L}{I|L} 4 -1 35.433 0 0 2.7975 0 0 823.3400746076187 0 823.3400746076187 0 33.21456278567766 0 0 0 0.5 0 0 0 AQ{I|L}{I|L} 2.7975 - 23 NaN NaN 112278.5 NaN 14831 3818 18644 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18653 77.86 NaN 4039600 35 0 706690 0.327 + 13803 KYPSPFFVF 9 87 566.2972883717671 1130.580023810334 2 566.2975463867188 MULTI HCD FTMS 0 0 0 18652 3101784.75 0.02790417869514388 24 -0.6888046264648438 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 111.28704002717404 0.0027322905094575235 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 85.028 0 0 7.5207 7.5207 93.121 0 0 0 13.520599913279625 16.478174818886373 13.520599913279625 13.520599913279625 0 2.8494850021680094 0 1.086696871556164 0.9802046884880937 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS]YK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]P{M(Oxidation (M))|F}SAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.5207;6.3248;6.0433;5.3974;5.3257;5.3078;5.1311;4.8632;4.8474;4.8384 +;-;-;-;-;-;-;-;-;- + 3262 NaN NaN 562975.1 NaN 14832 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18654 77.864 NaN 970930 35 0 117090 0.261 + 32275 VYTVVDEMFL 10 91 616.3000499544922 1230.5855469757844 2 616.3005981445312 MULTI HCD FTMS 0 0 0 18652 451211.25 0.13268992186796402 7 -0.2100677490234375 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 181.3275282027936 3.980396822113991E-16 2 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 122.99 0 0 9.9942 9.9942 92.37 0 0 0 13.081845230116201 6.817496819840656 6.817496819840656 6.817496819840656 0 3.1861818737241734 1.6989700043360187 2.6791746928241125 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]SVVDEYM{I|L};[Y{I|L}]SVVDEMY{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YSVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{I|L}YYDDVVTM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]YDDVVTM{I|L};{I|L}YSVVDEYM{I|L} 9.9942;9.4402;9.223;9.0131;8.9312;8.5964;8.5436;8.3772;8.3099;8.3056 -;-;-;-;+;-;-;-;-;- + 5144 NaN NaN 239209.6 NaN 14833 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18655 77.868 NaN 268290 35 0 52637 0.261 + 33278 YFLKGVLVF 9 56 543.3233757198498 1084.6321985064994 2 543.3234252929688 MULTI HCD FTMS 0 0 0 18652 132593.984375 0.35501653882161327 3 -0.09859466552734375 3 Unmodified _YFLKGVLVF_ ENSG00000031698|ENST00000234677|SARS1 57.47134341890925 0.0211188941628804 2 {I|L}KR{I|L}V{M(Oxidation (M))|F} 6 4 49.902 0 0 4.6008 0 0 310.1315174787125 0 310.1315174787125 0 39.44450997407991 0 0 0 2.2302046884880937 0 0 0 {I|L}KR{I|L}V{M(Oxidation (M))|F} 4.6008 - 109 NaN NaN 132381.1 NaN 14834 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18656 77.871 NaN 363070 35 0 112500 0.261 + 31490 VYFKNFIPF 9 49 587.817957823353 1173.621362713506 2 588.3198852539062 MULTI HCD FTMS 0 0 0 18652 103698.4765625 0.09524083996628865 10 -0.30202484130859375 4 Unmodified _VYFKNFIPF_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 16.942295170755138 0.21397866736869717 2 [YV]{I|L} 3 6 37.447 0 0 3.1907 0 0 0 795.3829648465716 795.3829648465716 20.993624753846092 0 0 0 0 1 1.6989700043360187 0 0 [YV]{I|L} 3.1907 - 61 NaN NaN 152864 NaN 14835 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18657 77.874 NaN 119820 35 0 21500 0.261 + 19291 NLVAMLLDL 9 49 501.2907146008443 NaN 0 501.2908935546875 PEAK HCD FTMS 0 0 0 18652 73077.8125 0.8212566791043892 -5 0.1376190185546875 5 Unmodified _NLVAMLLDL_ tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1 6.723162845929126 0.26266733336404485 2 V 1 8 6.9897 0 0 0.69857 0 0 130.1139476569636 768.3588350885374 898.472782745501 0 0 0 0 0 0 0 0 0 + V 0.69857 + + 7 + NaN NaN 111580.2 NaN 14836 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18658 77.878 NaN 181490 35 0 42154 0.261 -1 SECFNCGKCS 10 58 596.2156209863251 1190.4166890394501 2 596.21533203125 MULTI HCD FTMS 0 0 0 18652 40817.84765625 0.5265834362626747 1 -0.03282928466796875 6 2 Carbamidomethyl (C) _SEC(Carbamidomethyl (C))FNC(Carbamidomethyl (C))GKCS_ ENSG00000112214|ENST00000450218|FHL5 1.1933415558491238 0.46898715808974617 2 S 1 -1 6.9897 0 0 0.58716 0 0 484.84999089667514 615.5048922174436 1100.3548831141188 0 0 0 0 0 0 0 0 0 S 0.58716 + + 11 + NaN NaN 139042 NaN 14837 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18659 77.881 NaN 141840 35 0 11069 0.262 + -1 YVGQFCHC 8 51 507.20258154437846 1012.3906101555569 2 507.2027282714844 MULTI HCD FTMS 0 0 0 18652 31545.591796875 0.4772201152087893 1 -0.03282928466796875 7 Carbamidomethyl (C) _YVGQFC(Carbamidomethyl (C))HC_ REV__ENSG00000091136|ENST00000222399|LAMB1 2.577480529830294 0.5381683276125971 2 E 1 -1 4.6041 0 0 0.45477 0 0 377.5706771495007 502.75809447012415 880.3287716196248 0 0 0 0 0 0 0 0 0 E 0.45477 - 3 + NaN NaN 135601.5 NaN 14838 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18660 77.884 NaN 135590 35 0 8528.4 0.261 + -1 NREVCVRYC 9 59 599.7788436378388 NaN 0 599.7650146484375 PEAK HCD FTMS 0 0 0 18652 16693.896484375 0.7807487456538166 -2 0.0590057373046875 8 Carbamidomethyl (C) _NREVC(Carbamidomethyl (C))VRYC_ REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|29|3|sense 6.2057823575117 0.2651744870083793 2 AYVQ 4 -1 17.339 0 0 1.4479 0 0 424.20147282079625 309.0911043756469 733.2925771964432 0 0 0 0 0 0 0 0 0.3807196863200844 AYVQ 1.4479 - 52 + NaN NaN 111084.8 NaN 14839 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18661 77.888 NaN 148540 35 0 23745 0.263 + 32926 YAGLIVRR 8 46 474.2908657153465 NaN 0 474.2907409667969 PEAK HCD FTMS 0 0 0 18652 17237.1484375 0.14285766084327237 13 -0.3773651123046875 9 Unmodified _YAGLIVRR_ ENST00000526972.5_1_11:65601488-65617723:+|nuORF;ENST00000533298.5_1_11:65601362-65617723:+|nuORF 2.8892196856762586 0.38822285293237185 2 VAE{I|L}C 5 6 25.745 0 0 2.7199 0 0 130.12950867503054 298.1768892877563 428.30639796278683 0 0 0 0 0 0.3807196863200844 0 0 0 VAE{I|L}C 2.7199 - 53 + NaN NaN 110792.7 NaN 14840 3819 18652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18663 77.893 NaN 925790 35 0 94776 0.327 + 6488 FPIPGEPGF 9 58 480.74560057336413 959.4766482135283 2 480.7474060058594 MULTI HCD FTMS 0 0 0 18662 465303.5625 0.5937094458554896 19 -0.5413818359375 1 Unmodified _FPIPGEPGF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 44.40701690623563 0.04511410083598184 2 {[DA]|[EG]}{I|L}AE{I|L}DT 8 7 66.416 0 0 6.9221 0 0 0 128.06665728849114 128.06665728849114 34.51310831860473 0 0 0 0 2.3169015600442577 1.5228787452803376 0.6694451763165201 0 {[DA]|[EG]}{I|L}AE{I|L}DT 6.9221 - 348 NaN NaN 232427 NaN 14841 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18664 77.897 NaN 933640 35 0 112290 0.261 + 17450 LYSGPDRYIF 10 96 615.8116347154107 1229.6087164976213 2 616.2990112304688 MULTI HCD FTMS 0 0 0 18662 41561.86328125 0.27432860140186127 -4 0.114715576171875 2 Unmodified _LYSGPDRYIF_ REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__nc|ENSG00000008710|P98161-2|PKD1;REV__nc|ENSG00000008710|P98161-3|PKD1 37.97399986684836 0.1629881689457739 2 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 72.036 0 0 5.8584 0 0 0 127.0955729454305 127.0955729454305 6.585346582070059 0 0 0 0 0 1.6989700043360187 2.423393743112328 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.8584 - 5880 NaN NaN 234088.7 NaN 14842 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18665 77.901 NaN 693530 35 0 145860 0.261 + 9160 HPIETLVDIF 10 78 592.3213089153093 1182.6280648974184 2 591.8046264648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HPIETLVDIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 8.745405648335112 0.42901288225909884 2 H{M(Oxidation (M))|F}{M(Oxidation (M))|F}QD{I|L}{M(Oxidation (M))|F} 7 6 29.206 0 0 2.4696 0 0 230.16302687812657 0 230.16302687812657 0 1.1235042997689924 0 0 0 0.3807196863200844 0 0 0 H{M(Oxidation (M))|F}{M(Oxidation (M))|F}QD{I|L}{M(Oxidation (M))|F} 2.4696 - 444 NaN NaN 204817.5 NaN 14843 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18666 77.904 NaN 197410 35 0 33928 0.261 + -1 NYLKGHPMTAQ 11 59 638.3112473458033 1274.6079417584065 2 638.3110961914062 MULTI HCD FTMS 0 0 0 18662 109723.7109375 0.10824776617665212 8 -0.229705810546875 4 Oxidation (M) _NYLKGHPM(Oxidation (M))TAQ_ REV__ZMYM2|p.D601H|1|0.57|ENSG00000121741|chr13:20027268-20027268|G/C|missense_variant 10.799506525563784 0.36298595732910816 2 [YN]{I|L}E 4 -1 30.718 0 0 2.41 0 0 0 752.3540743463499 752.3540743463499 9.278259348524358 0 0 0 0 0.5 1.6989700043360187 0.3807196863200844 0 [YN]{I|L}E 2.41 - 91 + NaN NaN 120164.5 NaN 14844 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18667 77.907 NaN 176580 35 0 38869 0.264 + 4028 ERTYTNPAKM 10 51 404.20085900481973 NaN 0 404.18817138671875 PEAK HCD FTMS 0 0 0 18662 3828.760009765625 0.07099491655678163 2 -0.065765380859375 5 Unmodified _ERTYTNPAKM_ REV__tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1 3.072263186857199 0.33755485754653514 2 Q 1 -1 4.6041 0 0 0.57095 0 0 172.18338197272698 503.1228121393188 675.3061941120458 0 0 0 0 0 0 0 0 0 Q 0.57095 - 3 + NaN NaN 109741 NaN 14845 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18668 77.911 NaN 208850 35 0 21798 0.261 + 33284 YFLLSHLAF 9 61 555.8028577828098 1109.5911626324196 2 555.80322265625 MULTI HCD FTMS 0 0 0 18662 94680.3046875 1 0 0 6 Unmodified _YFLLSHLAF_ ENSG00000186509|ENST00000335397|OR9Q1 42.09456458481378 0.05572955244001856 2 {I|L}A{M(Oxidation (M))|F} 3 6 33.812 0 0 3.0473 0 0 760.394823142775 0 760.394823142775 0 20.612431371158735 0 0 0 1 0 0 0 + {I|L}A{M(Oxidation (M))|F} 3.0473 + + 34 NaN NaN 138562 NaN 14846 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18669 77.914 NaN 249880 35 0 25963 0.261 -1 TCRDRFLE 8 66 548.7620201034799 1095.5094872737598 2 548.7479858398438 MULTI HCD FTMS 0 0 0 18662 60567.66015625 0.49307235754622003 -1 0.03282928466796875 7 Carbamidomethyl (C) _TC(Carbamidomethyl (C))RDRFLE_ ENSG00000088305|ENST00000328111|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;nc|ENSG00000088305|Q9UBC3-7|DNMT3B;nc|ENSG00000088305|Q9UBC3-8|DNMT3B 12.531546534597751 0.5015908124873912 2 TP{I|L} 3 -1 28.188 0 0 2.573 0 0 0 781.3017498414138 781.3017498414138 11.812412373755873 0 0 0 0 0.5 0 0 0 TP{I|L} 2.573 - 241 + NaN NaN 137255.2 NaN 14847 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18670 77.917 NaN 134760 35 0 10265 0.261 + 33887 YLNFATLYL 9 54 559.3000113218731 1116.585469710546 2 559.8173828125 MULTI HCD FTMS 0 0 0 18662 5636.02001953125 0.6839250575489054 -2 0.0590362548828125 8 Unmodified _YLNFATLYL_ ENSG00000133256|ENST00000496514|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B 15.847184025352803 0.2234401846867398 2 {I|L}Q{M(Oxidation (M))|F} 3 7 23.456 0 0 2.1007 0 0 710.3762074201187 0 710.3762074201187 0 4.1240876601027985 0 0 0 0.4247425010840047 0 0 0 {I|L}Q{M(Oxidation (M))|F} 2.1007 - 38 NaN NaN 112639.2 NaN 14848 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18671 77.921 NaN 70695 35 0 10981 0.262 + 32424 WARGCLCP 8 28 453.20969455154255 NaN 0 453.21002197265625 PEAK HCD FTMS 0 0 0 18662 26424.193359375 0.5677263070805894 -30 0.7115249633789062 9 Unmodified _WARGCLCP_ ENST00000493076.5_1_22:35819109-35819445:+|nuORF 0.7936320650641473 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 0.48455 0 0 0.053577 0 0 470.24588338843824 284.1034334772094 754.3493168656477 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.053577 - 1 + NaN NaN 118914.3 NaN 14849 3820 18662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18673 77.926 NaN 1866600 35 0 515530 0.326 + 20093 NYIPRFWTF 9 92 622.3162503270299 1242.6179477208598 2 622.3165283203125 MULTI HCD FTMS 0 0 0 18672 1594101.125 0.12267280820338139 9 -0.255859375 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 118.0683919894846 0.0016252157255221692 2 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 99.844 0 0 8.035 8.035 96.425 0 0 0 31.43938964343363 82.87187799975615 31.43938964343363 42.703489857067396 0 2.094187677400525 1.6989700043360187 0.28872548999643577 1.3441876774005248 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AAPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[QP][YV]R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[WT]|[RM]}{[TV]|[{I|L}S]}R{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]PAAR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}PR{I|L}[YG]T{M(Oxidation (M))|F};{[WT]|[RM]}{[TV]|[{I|L}S]}R{M(Oxidation (M))|F}{[DA]|[EG]}T{M(Oxidation (M))|F};[RP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}R{M(Oxidation (M))|F}[VS]T{M(Oxidation (M))|F};[RP]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};{[RE]|[WV]}[WQ][VG]P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 8.035;4.5984;3.5241;3.2407;3.1741;2.538;2.4997;2.3991;2.3991;1.9258 +;-;-;-;-;-;-;-;-;- + 848 NaN NaN 372610.1 NaN 14850 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18674 77.93 NaN 793910 35 0 81031 0.261 -1 YYMDYLAAL 9 68 569.7595712656814 1137.5045895981627 2 569.759765625 MULTI HCD FTMS 0 0 0 18672 503041.78125 0.6861339732399286 3 -0.0852203369140625 2 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 28.486842064014134 0.11819662193267319 2 {I|L}AA{I|L} 4 -1 38.844 0 0 3.4149 0 0 751.2526284785976 0 751.2526284785976 0 26.53720958383822 0 0 0 1.2302046884880937 0 0 0 {I|L}AA{I|L} 3.4149 + + 112 NaN NaN 211634.5 NaN 14851 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18675 77.934 NaN 939820 35 0 124560 0.261 + 12884 KYFPYLVVI 9 97 571.3362885580224 1140.6580241828447 2 571.3363647460938 MULTI HCD FTMS 0 0 0 18672 519252.78125 1 0 0 3 Unmodified _KYFPYLVVI_ ENSG00000171017|ENST00000306708|LRRC8E 34.10243960390752 0.09241788333544565 2 ED{I|L}VV{I|L} 6 5 38.197 0 0 3.3487 0 0 454.26082045722814 0 454.26082045722814 0 10.749874392406667 0 0 0 0.9247425010840047 0 0 0 ED{I|L}VV{I|L} 3.3487 - 1047 NaN NaN 248030 NaN 14852 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18676 77.937 NaN 648980 35 0 170700 0.261 + 28456 TPLPEEFEL 9 55 537.7713051125137 1073.5280572918273 2 537.771484375 MULTI HCD FTMS 0 0 0 18672 431652.5625 1 0 0 4 Unmodified _TPLPEEFEL_ ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540|SMG7;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant 46.020951573049366 0.037705236580089195 2 {M(Oxidation (M))|F}E{I|L} 3 6 38.94 0 0 3.6273 0 0 666.3230394600308 0 666.3230394600308 0 33.455612550363796 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + {M(Oxidation (M))|F}E{I|L} 3.6273 + + 62 NaN NaN 191882.8 NaN 14853 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18677 77.94 NaN 656090 35 0 69687 0.261 + 6256 FPFAVANQL 9 72 503.7716250698475 1005.528697206495 2 503.7715759277344 MULTI HCD FTMS 0 0 0 18672 241291.359375 0.6348572860161789 3 -0.0852203369140625 5 Unmodified _FPFAVANQL_ ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 85.35673624503755 0.00464763827098139 2 VANQ{I|L} 5 4 52.783 0 0 5.2493 0 0 462.22803425049545 0 462.22803425049545 0 38.178688099328575 0 0 0 1.524227503252014 0 0 0.3807196863200844 + VANQ{I|L} 5.2493 + + 250 NaN NaN 192943.9 NaN 14854 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18678 77.944 NaN 251340 35 0 10184 0.261 + 31240 VVQVQRAN 8 68 457.2642804947058 912.5140080562117 2 457.26422119140625 MULTI HCD FTMS 0 0 0 18672 212612.0625 0.2827962620738158 65 -1.8319931030273438 6 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 4.75600775471527 0.5349361699807423 2 Q 1 7 7.3464 0 0 0.80507 0 0 370.2192215345304 411.2218416803344 781.4410632148648 0 0 0 0 0 0.4247425010840047 0 0 0 + Q 0.80507 + + 18 + NaN NaN 122724.4 NaN 14855 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18679 77.947 NaN 839910 35 0 210680 0.261 + 33380 YGLEKFWAF 9 79 580.7922665817962 1159.5699802303923 2 580.7927856445312 MULTI HCD FTMS 0 0 0 18672 471531.46875 0.4942274431738604 -3 0.09195709228515625 7 Unmodified _YGLEKFWAF_ ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 51.41523569358685 0.02959097413485123 2 PEKAS{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 7 70.157 0 0 6.0503 0 0 236.11592299629064 0 236.11592299629064 0 51.345113886774385 0 0 0 2.9247425010840047 0 0 0 PEKAS{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.0503 - 846 NaN NaN 207705.5 NaN 14856 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18680 77.95 NaN 332200 35 0 61326 0.261 -1 YLMTWAHEM 9 65 607.2542640081238 1212.4939750830474 2 607.2548217773438 MULTI HCD FTMS 0 0 0 18672 186754.015625 0.17826326926135566 8 -0.23627471923828125 8 2 Oxidation (M) _YLM(Oxidation (M))TWAHEM(Oxidation (M))_ ENST00000263997.10_1_16:68332069-68332321:-|nuORF 7.910154910731844 0.2910521888787154 2 [Y{I|L}]NV 4 -1 28.672 0 0 2.3647 0 0 0 720.2127876212381 720.2127876212381 5.924778212679485 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]NV 2.3647 - 118 NaN NaN 150504.8 NaN 14857 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18681 77.954 NaN 253300 35 0 47443 0.261 + 1731 CITSPFRWTF 10 60 629.3063901670442 1256.5982274008884 2 629.3063354492188 MULTI HCD FTMS 0 0 0 18672 164061.25 0.14154751600281004 9 -0.255859375 9 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 20.41453444215458 0.3201613495159799 2 T{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.3447 0 0 990.4754917343394 0 990.4754917343394 0 9.006375246153908 0 0 0 0.4247425010840047 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.3447 + + 48 NaN NaN 138000.8 NaN 14858 3821 18672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18683 77.958 NaN 658520 35 0 125150 0.326 + 1428 AYQLMVDVF 9 62 551.2678555593174 1100.5211581854346 2 551.2681884765625 MULTI HCD FTMS 0 0 0 18682 289905.53125 0.33007079408106915 4 -0.11147308349609375 1 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 88.95385435242217 0.004553379958619559 2 {M(Oxidation (M))|F}SQ{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 9 2 + 93.867 0 0 8.5293 8.5293 95.229 0 0 0 60.67918449261214 16.478174818886373 16.478174818886373 16.293709283484077 0 3.0924778212679485 0 1.610924374808178 0 {M(Oxidation (M))|F}SQ{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{M(Oxidation (M))|F}[MT]{[QD]|[EN]|[WG]|[KD]|[RS]}VDV{M(Oxidation (M))|F};{M(Oxidation (M))|F}[MT]V{[QD]|[EN]|[WG]|[KD]|[RS]}DV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{M(Oxidation (M))|F}[MT]V{M(Oxidation (M))|F}{I|L}Q{[ES]|[DT]|[{I|L}C]};{M(Oxidation (M))|F}[MT]V{M(Oxidation (M))|F}{I|L}[AG]{[ES]|[DT]|[{I|L}C]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{M(Oxidation (M))|F}V[MT]E;[DV]{M(Oxidation (M))|F}V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F} 8.5293;7.0488;6.212;5.8815;5.5356;5.5061;4.4131;3.5764;2.8704;2.8436 -;+;-;-;-;-;-;-;-;- + 472 + NaN NaN 194444.1 NaN 14859 3822 18682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18684 77.963 NaN 168450 35 0 24163 0.261 -1 0 59 465.77746469421976 929.5403764552395 2 465.7774353027344 MULTI HCD FTMS 0 0 0 18682 104158.953125 0.21680199148243312 29 -0.8161468505859375 2 NaN NaN 2 Q 1 -1 5.4846 0 0 0.59003 0 0 431.27348759025176 367.19709192447505 798.4705795147268 0 0 0 0 0 0 0 0 0 Q 0.59003 - 17 + NaN NaN 120399.4 NaN 14860 3822 18682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18685 77.966 NaN 333150 35 0 22079 0.261 + -1 YVARCDREDC 10 66 643.7655264831868 1285.5165000331735 2 643.765380859375 MULTI HCD FTMS 0 0 0 18682 126748.5 0.8007208942357777 4 -0.11147308349609375 3 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 13.90604991867851 0.3810395177745597 2 [YV]AS{M(Oxidation (M))|F}G[Y{M(Oxidation (M))|F}]W{M(Oxidation (M))|F} 10 -1 + 72.573 0 0 5.6454 5.6454 85.385 0 0 0 15.578278345927217 49.42471268044436 15.578278345927217 4.916440611282624 0 1.9247425010840047 1.6989700043360187 0.7742275032520141 0 [YV]AS{M(Oxidation (M))|F}G[Y{M(Oxidation (M))|F}]W{M(Oxidation (M))|F};[YV]AS{M(Oxidation (M))|F}[WY]G{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]AS{M(Oxidation (M))|F}G[WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]A[YQ][Y{M(Oxidation (M))|F}]W{M(Oxidation (M))|F};[YV]A[YQ][WY]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6454;5.263;5.126;3.001;2.7535 -;-;-;-;- 378 NaN NaN 138201.3 NaN 14861 3822 18682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18686 77.97 NaN 175150 35 0 13182 0.261 + 6775 FPQYFEATF 9 61 575.2663842343247 1148.5182155354494 2 575.2662353515625 MULTI HCD FTMS 0 0 0 18682 50294.390625 0.47772254451246443 17 -0.475616455078125 4 Unmodified _FPQYFEATF_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense 13.90604991867851 0.24021115267848145 2 CQPE 4 -1 33.162 0 0 2.8874 0 0 673.3112660138687 0 673.3112660138687 0 18.213337517843655 0 0 0 0.3252574989159953 0 0 0.2742275032520141 CQPE 2.8874 - 137 NaN NaN 128999.4 NaN 14862 3822 18682 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18688 77.975 NaN 1549300 35 0 185620 0.327 + 13567 KYPENFFLL 9 98 585.8131605635726 1169.6117681939452 2 585.8135375976562 MULTI HCD FTMS 0 0 0 18687 1007252.875 0.005120143799558886 98 -2.7591629028320312 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 91.468 0 0 7.8203 7.8203 91.745 0 0 0 9.449689600073441 53.31546893236257 9.449689600073441 9.208187539523749 0 2.555462187404089 0 0.2614393726401688 1.646591250700361 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]N[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 7.8203;7.0331;6.8901;6.5924;6.1028;6.1028;6.0335;5.996;5.8051;5.6622 +;-;-;-;-;-;-;-;-;- + 3333 NaN NaN 329614.1 NaN 14863 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18689 77.979 NaN 236720 35 0 88123 0.263 + 6041 FPDTPLAL 8 39 437.23932298359153 872.4640930339831 2 437.23956298828125 MULTI HCD FTMS 0 0 0 18687 159984.296875 0.3544545146947934 2 -0.059051513671875 2 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 26.34127834903884 0.3999841173197873 2 M[{I|L}P]A{I|L} 5 4 36.466 0 0 4.1796 0 0 329.1666820005831 0 329.1666820005831 0 35.75257498915995 0 0 0 1.4247425010840047 0 0 0 M[{I|L}P]A{I|L} 4.1796 - 24 + NaN NaN 129639.1 NaN 14864 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18690 77.983 NaN 391310 35 0 147220 0.261 -1 LYPQFMFHL 9 65 606.2995372156983 1210.5845214981964 2 606.2998046875 MULTI HCD FTMS 0 0 0 18687 80707.0234375 0.24818592778325752 30 -0.868743896484375 3 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 8.593279151180031 0.2858735984551981 2 [Y{I|L}][QP]W[QP]E 8 -1 10.78 0 0 0.89045 0 0 0 166.0730379693969 166.0730379693969 5.2950882783932265 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}][QP]W[QP]E 0.89045 - 22 + NaN NaN 168938.7 NaN 14865 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18691 77.986 NaN 194300 35 0 11440 0.261 + 22787 QYLDNLLVRF 10 57 640.8534768553919 1279.6924007775838 2 640.8534545898438 MULTI HCD FTMS 0 0 0 18687 57016.234375 0.17634702752356712 3 -0.09526824951171875 4 Unmodified _QYLDNLLVRF_ ENSG00000121879|ENST00000263967|PIK3CA 57.24910588100465 0.05142613675551719 2 [YQ]{I|L}DN{I|L}{I|L}VR{M(Oxidation (M))|F} 10 0 [YQ] + + 46.363 2.2185 0.76205 3.623 3.623 60.563 0 0 0 0 5.0147128475507685 0 0 0 1.4247425010840047 0 0 0 + + [YQ]{I|L}DN{I|L}{I|L}VR{M(Oxidation (M))|F} 3.623 + + 257 + NaN NaN 116968.1 NaN 14866 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18692 77.989 NaN 242850 35 0 24629 0.261 + 26826 SYIEHIFEI 9 61 575.7918752455935 1149.5691975579869 2 576.2924194335938 MULTI HCD FTMS 0 0 0 18687 95540.1484375 0.7396005476695228 -1 0.016204833984375 5 Unmodified _SYIEHIFEI_ ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 15.847184025352803 0.2234401846867398 2 {I|L}E{I|L} 3 6 22.224 0 0 1.9332 0 0 776.3466664044937 0 776.3466664044937 0 -0.9100653651287196 -0.9100653651287196 0 0 0.3807196863200844 0 0 0 {I|L}E{I|L} 1.9332 - 81 NaN NaN 124565.5 NaN 14867 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18693 77.993 NaN 214560 35 0 22491 0.261 + 32398 VYWTQLNMF 9 59 609.2869298144856 1216.559306695771 2 609.286376953125 MULTI HCD FTMS 0 0 0 18687 70955.390625 0.9963265881039639 3 -0.09526824951171875 6 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 82.5293158979368 0.005033931517079822 2 [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 91.054 0 0 7.4846 7.4846 91.178 0 0 0 20.87128018967597 88.58017516893504 20.87128018967597 9.208187539523749 0 2.3494850021680094 1.5228787452803376 0.3494850021680094 0.3252574989159953 + + [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][YN]QT[WP]{M(Oxidation (M))|F} 7.4846;6.7277;6.4603;5.707;4.3318 +;-;-;-;- + 262 NaN NaN 119419.4 NaN 14868 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18694 77.996 NaN 107790 35 0 14164 0.262 -1 MPMNVADLI 9 45 510.24856067263147 1018.482568412063 2 510.24847412109375 MULTI HCD FTMS 0 0 0 18687 26093.34765625 0.07666207314519222 15 -0.436492919921875 7 Oxidation (M) _M(Oxidation (M))PMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 9.38312468134398 0.279288223203164 2 TW{I|L}{I|L} 4 -1 30.477 0 0 2.9924 0 0 487.1926441876969 0 487.1926441876969 0 30.477372199242296 0 0 0 0.3054621874040891 0 0 0 TW{I|L}{I|L} 2.9924 - 10 NaN NaN 110284.2 NaN 14869 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18695 77.999 NaN 110060 35 0 12250 0.261 + 17469 LYSPRDYGLL 10 51 598.8192136121046 1195.623874291009 2 598.8206787109375 MULTI HCD FTMS 0 0 0 18687 22590.388671875 0.2818887003718716 3 -0.09526824951171875 8 Unmodified _LYSPRDYGLL_ ENSG00000181291|ENST00000631683|TMEM132E 7.289230182591677 0.43672065049472153 2 S{M(Oxidation (M))|F} 2 9 21.198 0 0 1.773 0 0 943.5119178803079 0 943.5119178803079 0 10.740312677277187 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 1.773 - 12 NaN NaN 122319.9 NaN 14870 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18696 78.003 NaN 77234 35 0 9065.8 0.262 -1 PFPPPMPPS 9 37 491.73685868945483 981.4591644457097 2 491.7398986816406 MULTI HCD FTMS 0 0 0 18687 27588.255859375 0.26253380182497327 18 -0.5181884765625 9 Oxidation (M) _PFPPPM(Oxidation (M))PPS_ ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA 8.593279151180031 0.2858735984551981 2 {[DA]|[EG]}{I|L} 3 -1 15.458 0 0 1.575 0 0 0 679.2907808893186 679.2907808893186 14.488474775526187 0 0 0 0 0.5 0 0 0 {[DA]|[EG]}{I|L} 1.575 - 11 + NaN NaN 102665.5 NaN 14871 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18697 78.006 NaN 84507 35 0 13533 0.261 + 15001 LLLLDNEL 8 43 471.7790402737936 NaN 0 471.7425842285156 PEAK HCD FTMS 0 0 0 18687 6003.39306640625 0.21074675796607195 2 -0.059051513671875 10 Unmodified _LLLLDNEL_ VPS13A|p.R2381L|1|0.42|ENSG00000197969|chr9:77344268-77344268|G/T|missense_variant 4.3292370932331545 0.38822285293237185 2 {M(Oxidation (M))|F}E 2 7 7.9588 0 0 0.84529 0 0 128.15261072161223 534.2567232721311 662.4093339937433 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}E 0.84529 - 10 + NaN NaN 99283.7 NaN 14872 3823 18687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18699 78.011 NaN 3111300 35 0 504970 0.327 + 13804 KYPSPFFVF 9 95 566.2972883717671 1130.580023810334 2 566.2975463867188 MULTI HCD FTMS 0 0 0 18698 2384363 0.021450131646333408 29 -0.8325729370117188 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 118.89474601620944 0.0014903111061077812 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 84.517 0 0 7.4756 7.4756 89.806 0 0 0 7.974629369512499 7.974629369512499 7.974629369512499 7.974629369512499 0 2.774227503252014 0 1.1307196863200843 0.9604093769761877 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS]YK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]P{M(Oxidation (M))|F}SAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F} 7.4756;6.7702;6.2972;5.499;5.3185;5.2802;4.9034;4.8355;4.6348;4.5686 +;+;-;-;-;-;-;-;-;- + 4465 NaN NaN 530112.5 NaN 14873 3824 18698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18700 78.015 NaN 164900 35 0 17545 0.261 + 18433 MPVDDVIGTL 10 41 530.2731190416152 1058.5316851500304 2 530.2731323242188 MULTI HCD FTMS 0 0 0 18698 98294.671875 1 0 0 2 Unmodified _MPVDDVIGTL_ ENSG00000140157|ENST00000337451|NIPA2;nc|ENSG00000140157|Q8N8Q9-2|NIPA2 29.081581746732265 0.240155558137004 2 {I|L}GT{I|L} 4 6 38.175 0 0 3.6064 0 0 656.2849132561627 0 656.2849132561627 0 14.987737688117235 0 0 0 0.9247425010840047 0 0 0 + {I|L}GT{I|L} 3.6064 + + 12 NaN NaN 125464.7 NaN 14874 3824 18698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18701 78.019 NaN 151190 35 0 24072 0.261 -1 MMFPWKQLI 9 55 634.31395871473 1266.61336449626 2 634.31396484375 MULTI HCD FTMS 0 0 0 18698 63519.1171875 0.7197594807605944 3 -0.0853118896484375 3 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))M(Oxidation (M))FPWKQLI_ CNTN3|p.N375Dfs*5|1|0.11|ENSG00000113805|chr3:74364557-74364558|-/CCTACATC|frameshift_variant;ENSG00000113805|ENST00000263665|CNTN3 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 25.969 0 0 2.0503 0 0 1022.4350855481523 0 1022.4350855481523 0 15.511525224473813 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.0503 + + 19 NaN NaN 132531.2 NaN 14875 3824 18698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18702 78.022 NaN 111020 35 0 10929 0.261 -1 EQHIMGFSPM 10 45 596.7621131594378 NaN 0 596.7623291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _EQHIM(Oxidation (M))GFSPM_ ENSG00000108510|ENST00000397786|MED13;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 3.5964929083625545 0.337106189561315 2 A{I|L} 2 -1 10.969 0 0 0.92061 0 0 614.2191552928273 390.14081751041255 1004.3599728032398 0 0 0 0 0 0 0 0 0 A{I|L} 0.92061 - 23 + NaN NaN 106819.8 NaN 14876 3824 18698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18703 78.025 NaN 114630 35 0 20197 0.263 + 30740 VPKKPKRKKRR 11 29 474.3273370174426 NaN 0 474.77349853515625 PEAK HCD FTMS 0 0 0 18698 19712.232421875 0.4113051355970746 3 -0.0853118896484375 5 Unmodified _VPKKPKRKKRR_ ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF 0 0.34212014346876374 2 E 1 11 4.6041 0 0 0.48636 0 0 300.30572276359766 514.2673433893186 814.5730661529162 0 0 0 0 0 0 0 0 0 E 0.48636 - 2 + NaN NaN 114792.3 NaN 14877 3824 18698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18704 78.029 NaN 97947 35 0 14617 0.261 + 14403 LEKLVDIL 8 44 471.79567319336036 NaN 0 471.79571533203125 PEAK HCD FTMS 0 0 0 18698 18651.587890625 0.9354155122469464 -3 0.0852203369140625 6 Unmodified _LEKLVDIL_ REV__ENSG00000125107|ENST00000317147|CNOT1;REV__nc|ENSG00000125107|A5YKK6-2|CNOT1;REV__nc|ENSG00000125107|A5YKK6-3|CNOT1;REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 2.302733041254933 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.58249 0 0 128.18819589668323 663.2999971979124 791.4881930945955 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.58249 - 2 + NaN NaN 108347.9 NaN 14878 3824 18698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18706 78.034 NaN 810120 35 0 220900 0.327 + 14589 LFLPYSHFL 9 72 568.810461032186 1135.606369131172 2 568.8104248046875 MULTI HCD FTMS 0 0 0 18705 362966.78125 0.7368955282665522 1 -0.03621673583984375 1 Unmodified _LFLPYSHFL_ ENSG00000115486|ENST00000233838|GGCX;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;REV__ENST00000300952.6_1_19:1257715-1257928:+|nuORF 57.47134341890925 0.0211188941628804 2 {I|L}{M(Oxidation (M))|F}{I|L}PYSH{I|L}{M(Oxidation (M))|F} 9 2 + 78.331 0 0 6.8977 6.8977 92.812 0 0 0 71.16373455765242 14.973024840566467 14.973024840566467 18.75569708000178 0 1.4247425010840047 0 1.2302046884880937 0 {I|L}{M(Oxidation (M))|F}{I|L}PYSH{I|L}{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{I|L}P[HS]Y{I|L}{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{I|L}PQ{M(Oxidation (M))|F}[QP]{M(Oxidation (M))|F} 6.8977;5.2461;3.81 -;-;- 294 + NaN NaN 211076.5 NaN 14879 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18707 78.038 NaN 719010 35 0 70114 0.261 + 33304 YFQNTQGLIF 10 88 615.8116347154107 1229.6087164976213 2 615.8111572265625 MULTI HCD FTMS 0 0 0 18705 250018.34375 0.9443910181310953 1 -0.03621673583984375 2 Unmodified _YFQNTQGLIF_ ENSG00000004059|ENST00000000233|ARF5;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000168374|ENST00000303436|ARF4;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF 74.19965305603844 0.012609120674105788 2 [YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TQVA{I|L}{M(Oxidation (M))|F} 10 4 + 78.563 0 0 6.3892 6.3892 88.357 0 0 0 9.71217778224478 46.95357716036932 9.71217778224478 9.164539485499247 0 1.5021934810768762 1.3010299956639813 1.055462187404089 1.1382104921644451 [YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TQVA{I|L}{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[AG]VA{I|L}{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T{[VA]|[{I|L}G]}GA{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}{M(Oxidation (M))|F}GA{I|L}{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}TQV[PS]{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T{[VA]|[{I|L}G]}Q{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T{I|L}{I|L}AN{M(Oxidation (M))|F};[Y{I|L}]{[QN]|[E{I|L}]|[KN]}D[{M(Oxidation (M))|F}V]AN{M(Oxidation (M))|F};[YN]AWV[HV][WR] 6.3892;5.6439;4.5149;4.3689;4.0728;3.9801;3.8342;2.699;2.2294;1.3129 -;-;-;-;-;-;-;-;-;- 1749 NaN NaN 207740.1 NaN 14880 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18708 78.042 NaN 402920 35 0 75752 0.261 + 18708 MYPYIFHVL 9 69 591.8040749161552 1181.5935968991103 2 591.8047485351562 MULTI HCD FTMS 0 0 0 18705 143023.65625 0.1874393717953517 12 -0.3545989990234375 3 Unmodified _MYPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 36.466142684027034 0.08156716203802528 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N 3 7 31.695 0 0 2.6824 0 0 0 770.4243258111936 770.4243258111936 14.16641133769943 0 0 0 0 0.4247425010840047 2 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N 2.6824 - 108 + NaN NaN 162813.3 NaN 14881 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18709 78.045 NaN 250540 35 0 28151 0.262 + 16227 LPWCLDLT 8 42 480.74560057336413 959.4766482135283 2 480.7473449707031 MULTI HCD FTMS 0 0 0 18705 131961.40625 0.16837767791429414 24 -0.6853713989257812 4 Unmodified _LPWCLDLT_ ENST00000470940.5_1_2:231314159-231314255:+|nuORF 26.34127834903884 0.3999841173197873 2 PG[RH]DT{I|L} 7 6 37.127 0 0 3.8695 0 0 165.0789509503922 0 165.0789509503922 0 19.719260468134006 0 0 0 1.3807196863200843 0 0 0 PG[RH]DT{I|L} 3.8695 - 67 NaN NaN 119251.2 NaN 14882 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18710 78.048 NaN 308960 35 0 34091 0.261 + 4767 EYTSILHLF 9 62 561.7948954347999 1121.5752379363996 2 561.7958984375 MULTI HCD FTMS 0 0 0 18705 97271.7421875 0.7042255058622945 -1 0.02288055419921875 5 Unmodified _EYTSILHLF_ ENSG00000198799|ENST00000361127|LRIG2 44.40701690623563 0.04511410083598184 2 [YE]TS{I|L}{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 61.916 0 0 5.5205 5.5205 91.713 0 0 0 24.854771935913995 16.478174818886373 16.478174818886373 34.79818770663016 0 0.7302046884880937 0 0 0 + + [YE]TS{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[QV]|[N{I|L}]|[RA]|[KV]}NH{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[QV]|[N{I|L}]|[RA]|[KV]}GGH{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}[PG]{[QV]|[N{I|L}]|[RA]|[KV]}VT{M(Oxidation (M))|F} 5.5205;2.4179;1.5969;1.1931 +;-;-;- + 536 + NaN NaN 133220.8 NaN 14883 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18711 78.052 NaN 171900 35 0 50444 0.263 -1 0 39 422.19764662669934 421.19037016009935 1 422.19879150390625 MULTI HCD FTMS 0 0 0 18705 58963.1484375 0.6182641674013415 20 -0.5673980712890625 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 112214.2 NaN 14884 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18712 78.055 NaN 94065 35 0 8935.4 0.261 + -1 ILVGIIPMF 9 41 509.8038367273643 1017.5931205215286 2 509.8039245605469 MULTI HCD FTMS 0 0 0 18705 18016.056640625 0.3338799775121441 1 -0.03621673583984375 7 Oxidation (M) _ILVGIIPM(Oxidation (M))F_ REV__tr|U7SVV2|U7SVV2_FUSNULarge-conductancemechanosensitivechannelOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mscLPE=3SV=1 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.2544 0 0 852.5139101717224 0 852.5139101717224 0 1.0817721953646835 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2544 + + 21 + NaN NaN 107029.1 NaN 14885 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18713 78.058 NaN 176100 35 0 23042 0.261 + 24275 RYFLPPYTF 9 47 602.3134737207005 NaN 0 602.314208984375 PEAK HCD FTMS 0 0 0 18705 56743.4296875 0.24233692563352052 30 -0.8621673583984375 8 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 27.628801355627647 0.1361920736132224 2 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 6 21.968 0 0 1.8267 0 0 165.07763807732596 463.2101229303344 628.2877610076604 0 0 0 0 0 1.2134679910804405 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 1.8267 - 26 + NaN NaN 116164.3 NaN 14886 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18714 78.062 NaN 81026 35 0 6078.6 0.261 + 11361 IYNGKLFDLL 10 56 598.3396552332181 1194.664757533236 2 598.3408203125 MULTI HCD FTMS 0 0 0 18705 7495.07763671875 0.13766688184069 19 -0.5378341674804688 9 Unmodified _IYNGKLFDLL_ ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C 8.745405648335112 0.42901288225909884 2 W 1 10 15.485 0 0 1.2961 0 0 990.5751406892892 0 990.5751406892892 0 6.505149978319906 0 0 0 0 0 0 0 W 1.2961 - 23 + NaN NaN 96500.9 NaN 14887 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18715 78.065 NaN 121050 35 0 20147 0.262 + 33194 YFALRKIL 8 48 512.3224838017841 NaN 0 512.2713623046875 PEAK HCD FTMS 0 0 0 18705 6955.28125 0.7313745486420213 -2 0.059051513671875 10 Unmodified _YFALRKIL_ ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39 0.7936320650641473 0.38822285293237185 2 {M(Oxidation (M))|F} 1 7 1.9897 0 0 0.19457 0 0 511.8079181877494 360.73212610416255 872.540044291912 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.19457 + + 2 + NaN NaN 117068.8 NaN 14888 3825 18705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18717 78.07 NaN 1128600 35 0 310040 0.327 + 20094 NYIPRFWTF 9 80 622.3162503270299 1242.6179477208598 2 622.3165893554688 MULTI HCD FTMS 0 0 0 18716 597965.25 0.046015949223758935 14 -0.39026641845703125 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 110.6747026088012 0.0028322563155251486 2 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 89.731 0 0 7.2211 7.2211 93.843 0 0 0 23.47795555957609 16.47817481888636 16.47817481888636 23.47795555957609 0 1.894599018282542 1.6989700043360187 0.4247425010840047 1.3684151806525389 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]NPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}]GGPR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[Y{I|L}][HQ][DV]P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 7.2211;5.3317;4.2843;1.9133 +;-;-;- + 293 NaN NaN 274031.6 NaN 14889 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18718 78.074 NaN 307400 35 0 43542 0.261 + 16096 LPTDFDEIF 9 63 548.7620201034799 1095.5094872737598 2 548.7472534179688 MULTI HCD FTMS 0 0 0 18716 31663.3203125 0.2577664046117927 5 -0.14109039306640625 2 Unmodified _LPTDFDEIF_ nc|ENSG00000173406|O75553-3|DAB1;nc|ENSG00000173406|O75553-5|DAB1;nc|ENSG00000173406|O75553|DAB1 16.942295170755138 0.21397866736869717 2 TP{I|L} 3 7 28.188 0 0 2.573 0 0 0 781.3033727437619 781.3033727437619 17.21848749616356 0 0 0 0 0.5 0 0 0 TP{I|L} 2.573 - 123 + NaN NaN 140925.2 NaN 14890 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18719 78.078 NaN 303240 35 0 36244 0.261 + 3128 EANRAELLF 9 64 531.7844638427932 1061.5543747523864 2 531.7846069335938 MULTI HCD FTMS 0 0 0 18716 60585.05078125 0.6461986464544215 1 -0.026214599609375 3 Unmodified _EANRAELLF_ REV__ENSG00000156869|ENST00000646001|FRRS1;REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 9.38312468134398 0.279288223203164 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.4463 0 0 783.3917281127077 0 783.3917281127077 0 5.791812460476251 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.4463 + + 139 + NaN NaN 146285.5 NaN 14891 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18720 78.081 NaN 217370 35 0 64495 0.263 -1 0 56 404.1881635092436 806.3617740852873 2 404.18792724609375 MULTI HCD FTMS 0 0 0 18716 70914.0078125 0.17857261176800912 24 -0.6719207763671875 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.783 0 0 1.4612 0 0 641.2827468409498 0 641.2827468409498 0 0.8136364874884983 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4612 - 15 + NaN NaN 122185.1 NaN 14892 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18721 78.085 NaN 261500 35 0 19520 0.261 -1 YYINMKAKK 9 60 587.817957823353 1173.621362713506 2 589.3192138671875 MULTI HCD FTMS 0 0 0 18716 64395.45703125 0.37329191683017154 28 -0.7996978759765625 5 Oxidation (M) _YYINM(Oxidation (M))KAKK_ ENSG00000140598|ENST00000268206|EFL1;nc|ENSG00000140598|Q7Z2Z2-2|EFL1 5.230669730166228 0.3113646817964458 2 YY{I|L} 3 -1 25.942 0 0 2.2104 0 0 0 731.3883359403216 731.3883359403216 12.843181179205061 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 2.2104 + + 52 NaN NaN 146093.3 NaN 14893 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18722 78.088 NaN 352390 35 0 47344 0.261 + 21528 PYLDKFFAL 9 79 557.3024295732822 1112.5903062133643 2 557.302978515625 MULTI HCD FTMS 0 0 0 18716 124527.640625 0.9138710613251629 -3 0.09526824951171875 6 Unmodified _PYLDKFFAL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 63.960520009940105 0.0120409805053046 2 PY{I|L}D 4 5 67.423 0 0 6.06 0 0 0 621.3427218072874 621.3427218072874 44.151603310239906 0 0 0 0 1.4247425010840047 2 0.4247425010840047 0 + PY{I|L}D 6.06 + + 479 + NaN NaN 150606.6 NaN 14894 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18723 78.091 NaN 132530 35 0 13551 0.261 + -1 SHYHSKLLMSG 11 52 638.3112473458033 1274.6079417584065 2 638.3109130859375 MULTI HCD FTMS 0 0 0 18716 41791.390625 0.04122923515728481 14 -0.39026641845703125 7 Oxidation (M) _SHYHSKLLM(Oxidation (M))SG_ REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense 4.5288652416199255 0.3990586020344083 2 T{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0374 0 0 1008.4808827130875 0 1008.4808827130875 0 24.3753063169585 0 0 0 0.5 0 0 0 T{M(Oxidation (M))|F} 2.0374 - 3 NaN NaN 110929.3 NaN 14895 3826 18716 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18725 78.096 NaN 1090000 35 0 355460 0.327 + 33381 YGLEKFWAF 9 77 580.7922665817962 1159.5699802303923 2 580.792724609375 MULTI HCD FTMS 0 0 0 18724 576038.3125 0.6037644594787401 3 -0.0853271484375 1 Unmodified _YGLEKFWAF_ ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 55.50274090549119 0.023872834264864425 2 EPA{M(Oxidation (M))|F} 4 6 50.165 0 0 4.3262 0 0 697.3600682177257 0 697.3600682177257 0 29.195925227640984 0 0 0 1.774227503252014 0 0.3494850021680094 0 EPA{M(Oxidation (M))|F} 4.3262 - 315 NaN NaN 265972.3 NaN 14896 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18726 78.101 NaN 207700 35 0 10467 0.263 + 9633 HTQKCLAL 8 66 457.24951868374166 NaN 0 457.2643737792969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _HTQKCLAL_ REV__ENST00000268251.12_1_16:8875406-8875859:+|nuORF 5.760428011301431 0.38822285293237185 2 Q 1 -1 4.6041 0 0 0.50457 0 0 414.2152411254927 367.19687830142817 781.4121194269209 0 0 0 0 0 0 0 0 0 Q 0.50457 + + 11 + NaN NaN 137866.5 NaN 14897 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18727 78.104 NaN 592800 35 0 77767 0.261 + 28457 TPLPEEFEL 9 58 537.7713051125137 1073.5280572918273 2 537.7716064453125 MULTI HCD FTMS 0 0 0 18724 142426.578125 0.3299565217454258 6 -0.180633544921875 3 Unmodified _TPLPEEFEL_ ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540|SMG7;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant 46.020951573049366 0.037705236580089195 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}E{I|L} 8 6 + 36.828 0 0 3.4305 3.4305 88.664 0 0 0 27.36371556024956 0.8180587453593446 0.8180587453593446 28.904696127498532 0 0.3054621874040891 0 1.5356668758921828 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}[YK]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{I|L} 3.4305;0.73803 -;- 158 + NaN NaN 174539.8 NaN 14898 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18728 78.108 NaN 216060 35 0 28085 0.261 + 16228 LPWCLDLT 8 45 480.74560057336413 959.4766482135283 2 480.74603271484375 MULTI HCD FTMS 0 0 0 18724 58127.6171875 0.07416860340348384 26 -0.7472610473632812 4 Unmodified _LPWCLDLT_ ENST00000470940.5_1_2:231314159-231314255:+|nuORF 26.34127834903884 0.3999841173197873 2 TD[RH]PG{M(Oxidation (M))|F} 7 8 39.257 0 0 4.0915 0 0 131.0887878178391 0 131.0887878178391 0 19.642878945214616 0 0 0 1.3807196863200843 0 0 0 TD[RH]PG{M(Oxidation (M))|F} 4.0915 - 65 + NaN NaN 146353.5 NaN 14899 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18729 78.111 NaN 212900 35 0 30198 0.261 + 1732 CITSPFRWTF 10 63 629.3063901670442 1256.5982274008884 2 629.30615234375 MULTI HCD FTMS 0 0 0 18724 34735.7265625 0.029969025662517523 15 -0.42627716064453125 5 Unmodified _CITSPFRWTF_ REV__ENSG00000077235|ENST00000356183|GTF3C1;REV__nc|ENSG00000077235|Q12789-3|GTF3C1 14.405379775768559 0.37636895476610294 2 T{M(Oxidation (M))|F} 2 -1 29.464 0 0 2.3447 0 0 990.4697330066589 0 990.4697330066589 0 9.006375246153908 0 0 0 0.4247425010840047 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 2.3447 + + 59 NaN NaN 141871.7 NaN 14900 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18730 78.114 NaN 116620 35 0 8322.8 0.262 -1 NLGMIALIQ 9 40 515.782296089064 NaN 0 515.7830810546875 PEAK HCD FTMS 0 0 0 18724 20659.2578125 0.10884030825146254 23 -0.6457061767578125 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))NLGM(Oxidation (M))IALIQ_ ENSG00000279395|ENST00000625203|OR5L1;OR5L1|p.S52I|1|0.25|ENSG00000279395|chr11:55811621-55811621|G/T|missense_variant 25.399314129420986 0.1511568710901456 2 Q{I|L}AH 4 -1 34.24 0 0 3.3257 0 0 131.09230430723727 446.20371423892817 577.2960185461654 0 0 0 0 0 1.3807196863200843 0 0 0 Q{I|L}AH 3.3257 - 40 + NaN NaN 109981.7 NaN 14901 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18731 78.118 NaN 162920 35 0 21208 0.261 + -1 TLYMEEGETF 10 50 618.261004203332 1234.507455473464 2 618.763427734375 MULTI HCD FTMS 0 0 0 18724 17437.3125 0.42918022330879396 1 -0.02625274658203125 7 Oxidation (M) _TLYM(Oxidation (M))EEGETF_ REV__ENSG00000173210|ENST00000309868|ABLIM3;REV__nc|ENSG00000173210|O94929-2|ABLIM3;REV__nc|ENSG00000173210|O94929-3|ABLIM3 6.2057823575117 0.44245551207394906 2 EHWVN 5 -1 51.682 0 0 4.1865 0 0 0 566.1677878298492 566.1677878298492 49.463950151760656 0 0 0 0 1.8494850021680094 0 0 0 EHWVN 4.1865 - 81 + NaN NaN 133838.6 NaN 14902 3827 18724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18733 78.122 NaN 1597900 35 0 203130 0.327 + 13568 KYPENFFLL 9 100 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 18732 873771.25 0.004441619933743368 103 -2.8902969360351562 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 70.33199760932243 0.0089807860198535 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}NEEK{I|L} 7 7 64.06 0 0 5.477 0 0 244.17830092597814 0 244.17830092597814 0 47.364036236356455 0 0 0 1.7302046884880937 0 0 0.7742275032520141 {M(Oxidation (M))|F}{M(Oxidation (M))|F}NEEK{I|L} 5.477 - 1859 NaN NaN 329512.7 NaN 14903 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18734 78.127 NaN 932850 35 0 101800 0.261 + 14622 LFTSLAFMLV 10 96 571.3184810267439 1140.6224091202878 2 572.3079833984375 MULTI HCD FTMS 0 0 0 18732 38437.59375 0.6319048764571183 1 -0.03948974609375 2 Unmodified _LFTSLAFMLV_ ENSG00000168389|ENST00000372811|MFSD2A;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENST00000491515.5_1_1:40432335-40433413:+|nuORF;nc|ENSG00000168389|Q8NA29-3|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A 34.10243960390752 0.1965851268881605 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 9 6 + 62.819 0 0 5.5074 5.5074 85.031 0 0 0 23.69485392768113 0.12715243156801392 0.12715243156801392 4.68765315847925 0 0.2742275032520141 2 0.5796896906561032 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}P{M(Oxidation (M))|F}V{I|L};[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}P{M(Oxidation (M))|F}V{I|L};[{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F}{[SA]|[TG]}PV{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]{I|L}{I|L}[TA]{M(Oxidation (M))|F}C{I|L}{I|L};[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[SA]|[TG]}PV{M(Oxidation (M))|F}{I|L};[{I|L}T]{M(Oxidation (M))|F}{I|L}[TA]{M(Oxidation (M))|F}C{I|L}{I|L};[{M(Oxidation (M))|F}T]{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L}{I|L};[{I|L}T]{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L}{I|L} 5.5074;5.0965;2.3058;2.1113;1.8948;1.715;1.7003;1.5205;1.4912;1.2967 -;-;-;-;-;-;-;-;-;- 2506 NaN NaN 234778.7 NaN 14904 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18735 78.13 NaN 555590 35 0 47193 0.261 + 231 AFDLIEHYF 9 72 577.7794285974932 1153.5443042617862 2 577.7794799804688 MULTI HCD FTMS 0 0 0 18732 178303.3125 0.4709956251117496 -3 0.08868408203125 3 Unmodified _AFDLIEHYF_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant 107.99703571036002 0.003269392969029945 2 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F} 9 0 + 86.891 0 0 7.5325 7.5325 93.849 0 0 0 5.6424927368725974 62.709347275122624 5.6424927368725974 17.583559388717376 0 3.1549471895720984 0 0.6747425010840047 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}EHY{M(Oxidation (M))|F};E{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{M(Oxidation (M))|F}N[WE];E{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{M(Oxidation (M))|F}GG[WE] 7.5325;6.0082;3.2781;2.4798 +;-;-;- + 426 NaN NaN 172645.1 NaN 14905 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18736 78.134 NaN 562020 35 0 43718 0.261 + 26671 SYADQMFLL 9 89 552.2575729466772 1102.5005929601543 2 552.2579345703125 MULTI HCD FTMS 0 0 0 18732 97248.09375 0.029907463034727473 40 -1.1442337036132812 4 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 55.50274090549119 0.023872834264864425 2 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 85.829 0 0 7.785 7.785 93.046 0 0 0 17.385606273598313 16.478174818886373 16.478174818886373 11.708187539523749 0 2.086696871556164 1.3979400086720375 0.5629529932484498 0.25 [YT]GDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ADQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YT]G[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT]GDQ{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YT][QT][DC]{M(Oxidation (M))|F}{I|L}{I|L};[YT]GD[AG]{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YT]G[YV][C(Carbamidomethyl (C))D]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}A[TA][DC]{M(Oxidation (M))|F}{I|L}{I|L} 7.785;6.723;6.208;5.1461;4.7272;4.675;3.908;3.8397;3.4536;3.1503 -;-;+;-;-;-;-;-;-;- + 1165 NaN NaN 184109.9 NaN 14906 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18737 78.137 NaN 233590 35 0 86475 0.262 + 6042 FPDTPLAL 8 41 437.23932298359153 872.4640930339831 2 437.2394104003906 MULTI HCD FTMS 0 0 0 18732 138432.75 0.3067058091173403 7 -0.213531494140625 5 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 26.34127834903884 0.3999841173197873 2 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3325755552706 0 670.3325755552706 0 30.969100130080562 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 19 + NaN NaN 140486.1 NaN 14907 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18738 78.14 NaN 156190 35 0 9679.8 0.261 -1 0 63 479.2775341566531 956.5405153801062 2 479.27716064453125 MULTI HCD FTMS 0 0 0 18732 122916.3984375 0.12278955682529946 -23 0.6857452392578125 6 NaN NaN 2 P 1 -1 2.7642 0 0 0.28898 0 0 544.311158545925 312.1499117486938 856.4610702946188 0 0 0 0 0 0 0 0 0 P 0.28898 - 27 + NaN NaN 108729.1 NaN 14908 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18739 78.144 NaN 209090 35 0 20945 0.261 -1 MPLSEDFVWM 10 58 643.7760060473078 NaN 0 643.7661743164062 PEAK HCD FTMS 0 0 0 18732 47717.03125 1 0 0 7 2 Oxidation (M) _M(Oxidation (M))PLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 10.073929032068715 0.33156240198919784 2 {M(Oxidation (M))|F}SA 3 -1 20.846 0 0 1.6216 0 0 718.2697722491092 259.10834680728755 977.3781190563968 0 0 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {M(Oxidation (M))|F}SA 1.6216 - 66 + NaN NaN 119928.5 NaN 14909 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18740 78.147 NaN 95703 35 0 6103 0.264 + 23336 RKGISAKSQ 9 51 487.79076122415506 973.5669695151101 2 487.790771484375 MULTI HCD FTMS 0 0 0 18732 60376.07421875 0.06787053367491885 -23 0.6857452392578125 8 Unmodified _RKGISAKSQ_ ENSG00000120278|ENST00000696526|PLEKHG1 1.4819007175156935 0.3397831423917744 2 {I|L} 1 8 5.4846 0 0 0.56335 0 0 341.2150540871789 516.2478731744749 857.4629272616537 0 0 0 0 0 0 0 0 0 + {I|L} 0.56335 + + 15 + NaN NaN 103080.6 NaN 14910 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18741 78.15 NaN 277010 35 0 32323 0.261 -1 CPHRLLMLIF 10 76 629.8449123648719 1257.6752717965437 2 629.8466186523438 MULTI HCD FTMS 0 0 0 18732 24303.265625 0.3542655279246695 4 -0.11483001708984375 9 Oxidation (M) _CPHRLLM(Oxidation (M))LIF_ ENST00000526955.1_1_11:125281302-125301285:+|nuORF 6.2057823575117 0.44245551207394906 2 {I|L}{M(Oxidation (M))|F} 2 -1 15.56 0 0 1.2372 0 0 979.5076771466812 0 979.5076771466812 0 4.762809413564641 0 0 0 0.3252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 1.2372 + + 65 NaN NaN 129764.8 NaN 14911 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18742 78.154 NaN 278970 35 0 51334 0.262 + -1 SIMQELYIA 9 63 542.2716406323834 1082.5287283315668 2 542.7734985351562 MULTI HCD FTMS 0 0 0 18732 17638.501953125 0.5655742042571095 -3 0.08868408203125 10 Oxidation (M) _SIM(Oxidation (M))QELYIA_ REV__ENST00000257290.9_1_4:55095371-55095452:+|nuORF 14.838274106304384 0.23215694253501695 2 {I|L}TV{M(Oxidation (M))|F} 4 -1 36.414 0 0 3.3638 0 0 604.250177161448 0 604.250177161448 0 29.424712680444358 0 0 0 0.9247425010840047 0 0 0 {I|L}TV{M(Oxidation (M))|F} 3.3638 - 87 + NaN NaN 144223.6 NaN 14912 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18743 78.157 NaN 83212 35 0 3926.6 0.261 + 14033 KYTTFSLFW 9 43 596.8037813289138 NaN 0 597.2901611328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _KYTTFSLFW_ ENST00000585682.5_1_4:159047074-159047500:-|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L} 1 8 5.4846 0 0 0.46027 0 0 685.347448056462 390.1402987115844 1075.4877467680465 0 0 0 0 0 0 0 0 0 + {I|L} 0.46027 + + 6 + NaN NaN 123599.8 NaN 14913 3828 18732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18745 78.162 NaN 2439200 35 0 429430 0.326 + 13805 KYPSPFFVF 9 92 566.2972883717671 1130.580023810334 2 566.2975463867188 MULTI HCD FTMS 0 0 0 18744 1773593.5 0.01595554622432961 34 -0.9569320678710938 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 111.28704002717404 0.0027322905094575235 2 [YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 2 + 83.408 0 0 7.3774 7.3774 92.448 0 0 0 12.188105454342804 16.478174818886373 12.188105454342804 12.188105454342804 0 2.9177353201839438 0 0.9559771852360797 0.8807196863200843 [YK]PS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]PS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[PS]YK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{M(Oxidation (M))|F}P{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.3774;6.2994;5.87;5.5605;5.2525;5.235;4.8758;4.792;4.7865;4.4124 -;-;-;-;-;-;-;-;-;- 2932 NaN NaN 481798.2 NaN 14914 3829 18744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18746 78.166 NaN 350000 35 0 25555 0.261 + 19847 NYAWVYYHL 9 66 614.7929572147666 NaN 0 614.7931518554688 PEAK HCD FTMS 0 0 0 18744 138822.3125 0.7912186987990605 -22 0.6600570678710938 2 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.04111961458024335 2 YVWA 4 7 35.556 0 0 2.8964 0 0 431.2173023908219 274.08315599955023 705.3004583903721 0 0 0 0 0 2.2614393726401687 0 0 0 YVWA 2.8964 - 99 NaN NaN 161659.4 NaN 14915 3829 18744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18747 78.17 NaN 336690 35 0 134010 0.261 -1 LYPQFMFHL 9 49 606.2995372156983 1210.5845214981964 2 606.2999267578125 MULTI HCD FTMS 0 0 0 18744 140820.609375 0.4330440164950863 36 -1.0228118896484375 3 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 18.13498045792455 0.20367413111508956 2 {I|L}Y 2 -1 42.206 0 0 3.4864 0 0 0 931.4135345842574 931.4135345842574 34.30137532970711 0 0 0 0 0.4247425010840047 2 0 0 {I|L}Y 3.4864 + + 25 + NaN NaN 156559.5 NaN 14916 3829 18744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18748 78.173 NaN 194680 35 0 73809 0.262 + 33178 YETASWII 8 37 491.7476190524035 981.480685171607 2 491.7475891113281 MULTI HCD FTMS 0 0 0 18744 80709.6484375 0.5958048234259135 -3 0.09195709228515625 4 Unmodified _YETASWII_ ENSG00000154975|ENST00000451037|CA10;nc|ENSG00000154975|Q9NS85-2|CA10 9.347437153973935 0.5250182646323369 2 {I|L}{I|L} 2 6 25.969 0 0 2.6459 0 0 737.2993681300784 0 737.2993681300784 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6459 + + 4 NaN NaN 133639.1 NaN 14917 3829 18744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18749 78.177 NaN 226940 35 0 28367 0.261 + 29673 VASSVFITL 9 55 468.7734765350399 935.5324001368798 2 468.77349853515625 MULTI HCD FTMS 0 0 0 18744 70362.1953125 0.5806600626914946 -3 0.09195709228515625 5 Unmodified _VASSVFITL_ ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;nc|ENSG00000162458|Q8WUP2-3|FBLIM1 61.357469665136826 0.01568246967499496 2 [{I|L}T][QT]{M(Oxidation (M))|F}{I|L}T{I|L} 8 5 + 51.961 0 0 5.5541 5.5541 92.422 0 0 0 7.803943707888763 39.93378736925017 7.803943707888763 51.96063146421345 0 1.5 0 1.5356668758921828 0 [{I|L}T][QT]{M(Oxidation (M))|F}{I|L}T{I|L} 5.5541 - 142 NaN NaN 123315.1 NaN 14918 3829 18744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18751 78.182 NaN 1001000 35 0 284010 0.327 + 10568 IPKPNIFLP 9 51 519.820981901874 1037.627410870548 2 521.326416015625 MULTI HCD FTMS 0 0 0 18750 327811.375 0.4520438052204215 -2 0.05907440185546875 1 Unmodified _IPKPNIFLP_ REV__ENSG00000143753|ENST00000323699|DEGS1 9.347437153973935 0.2795965555214564 2 [{I|L}P][RV]S{I|L}P{I|L} 8 -1 34.614 0 0 3.3359 0 0 0 159.04568079227093 159.04568079227093 15.406075122407685 0 0 0 0 0 1.5228787452803376 0 0 [{I|L}P][RV]S{I|L}P{I|L} 3.3359 - 36 NaN NaN 244994.4 NaN 14919 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18752 78.186 NaN 277920 35 0 40560 0.261 -1 TPQFPDMIL 9 52 539.26788511357 1076.5212172939398 2 539.2679443359375 MULTI HCD FTMS 0 0 0 18750 116738.1796875 0.00599287720947799 92 -2.5818252563476562 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 22.736283301280096 0.1639198954644489 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3416823948099 0 832.3416823948099 0 11.365006360318688 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 11 NaN NaN 131228.2 NaN 14920 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18753 78.189 NaN 421460 35 0 25223 0.261 + 34570 YPLLLKEIL 9 63 551.3495610662669 1100.6845691993337 2 551.3494873046875 MULTI HCD FTMS 0 0 0 18750 107393.5703125 0.09351167964628875 -10 0.28878021240234375 3 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 82.5293158979368 0.005033931517079822 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 9 0 + 77.145 0 0 7.0088 7.0088 91.047 0 0 0 8.47295930833134 53.22682509756042 8.47295930833134 9.291746928241125 0 2.3494850021680094 1.6989700043360187 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}[K{I|L}]E{I|L};YP[K{I|L}]{I|L}{I|L}{I|L}E{I|L};[{I|L}P]Y{I|L}{I|L}[K{I|L}]E{I|L};[{I|L}P]Y{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}[K{I|L}]E{I|L};[{I|L}P]{I|L}Y{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{I|L}{I|L}PY{I|L}[K{I|L}]E{I|L};{I|L}{I|L}PY{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 7.0088;6.1646;6.0087;4.5284;4.464;4.376;3.8006;3.7363;3.7126;3.6482 +;-;-;-;-;-;-;-;-;- + 433 NaN NaN 157930.2 NaN 14921 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18754 78.193 NaN 554670 35 0 81692 0.261 + 17587 LYVWAQLN 8 76 503.7716250698475 1005.528697206495 2 503.75823974609375 MULTI HCD FTMS 0 0 0 18750 7185.10693359375 0.018904603544083527 12 -0.34095001220703125 4 Unmodified _LYVWAQLN_ ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF;nc|ENSG00000136986|Q9BUN8-2|DERL1 26.34127834903884 0.3999841173197873 2 {I|L}DTC 4 7 18.532 0 0 1.843 0 0 131.12051133313497 439.2191561334594 570.3396674665944 0 0 0 0 0 0 0 0.3494850021680094 0 {I|L}DTC 1.843 - 339 + NaN NaN 173657.7 NaN 14922 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18755 78.196 NaN 399410 35 0 34482 0.261 + 4768 EYTSILHLF 9 77 561.7948954347999 1121.5752379363996 2 561.7949829101562 MULTI HCD FTMS 0 0 0 18750 61005.1328125 0.44166342196552194 4 -0.1182403564453125 5 Unmodified _EYTSILHLF_ ENSG00000198799|ENST00000361127|LRIG2 46.92087301778293 0.0358782797343276 2 [YE]TS{I|L}{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 64.307 0 0 5.7336 5.7336 92.204 0 0 0 23.187587626244124 16.478174818886373 16.478174818886373 36.251837901750996 0 0.3494850021680094 0.9208187539523752 0 0 + + [YE]TS{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};[YE]{I|L}{I|L}{[MG]|[TS]}H{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[QV]|[N{I|L}]|[RA]|[KV]}NH{I|L}{M(Oxidation (M))|F};[HN]N{[QV]|[N{I|L}]|[RA]|[KV]}NH{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[NV]|[RG]}QH{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[QV]|[N{I|L}]|[RA]|[KV]}GGH{I|L}{M(Oxidation (M))|F};[HN]GG{[QV]|[N{I|L}]|[RA]|[KV]}NH{I|L}{M(Oxidation (M))|F};[HN]N{[QV]|[N{I|L}]|[RA]|[KV]}GGH{I|L}{M(Oxidation (M))|F};{[YC]|[HE]}V{[NV]|[RG]}[AG]H{I|L}{M(Oxidation (M))|F};[YE]RR[HK]S{M(Oxidation (M))|F} 5.7336;2.5014;2.39;2.1922;2.1733;1.569;1.3712;1.3712;1.3523;1.1892 +;-;-;-;-;-;-;-;-;- + 1071 + NaN NaN 165066 NaN 14923 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18756 78.199 NaN 133770 35 0 18940 0.262 + 14115 LAAARSRSV 9 52 465.77746469421976 929.5403764552395 2 465.7772521972656 MULTI HCD FTMS 0 0 0 18750 64078.26953125 0.13337592236023268 37 -1.0555953979492188 6 Unmodified _LAAARSRSV_ REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B 3.5964929083625545 0.32375295897743744 2 P 1 -1 0.48455 0 0 0.052128 0 0 636.3805691816052 193.07979761295158 829.4603667945568 0 0 0 0 0 0 0 0 0 P 0.052128 - 9 + NaN NaN 115161 NaN 14924 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18757 78.203 NaN 454850 35 0 80777 0.261 + 26957 SYLITSVEL 9 55 512.7817259708847 1023.5488990085695 2 512.7816772460938 MULTI HCD FTMS 0 0 0 18750 131572.40625 0.1379726921151299 -4 0.111541748046875 7 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 118.89474601620944 0.0014903111061077812 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 9 0 + 88.937 0 0 8.6891 8.6891 98.274 0 0 0 4.762036441594191 74.2575939030096 4.762036441594191 88.93684392785687 0 2.6549471895720984 0 1.555462187404089 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 8.6891 + + 315 NaN NaN 157662.4 NaN 14925 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18758 78.206 NaN 174540 35 0 44767 0.262 + 8736 HHGAGAFF 8 39 422.1985239190314 842.3824949048628 2 422.1985168457031 MULTI HCD FTMS 0 0 0 18750 43085.2109375 0.0347492169417028 -21 0.61077880859375 8 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3037880950957 0 677.3037880950957 0 15.206963425791125 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 2 + NaN NaN 118348.4 NaN 14926 3830 18750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18760 78.211 NaN 896870 35 0 237560 0.327 + 20095 NYIPRFWTF 9 72 622.3162503270299 1242.6179477208598 2 622.3165893554688 MULTI HCD FTMS 0 0 0 18759 568805.5 0.04377198341575002 19 -0.5308303833007812 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 86.33184430468982 0.004622086694044132 2 [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F} 9 0 + 88.695 0 0 7.1377 7.1377 94.091 0 0 0 12.909393809954892 12.909393809954892 12.909393809954892 28.1437180047066 0 2.4291746928241125 1.6989700043360187 0 1.1549471895720984 + + [YN]{I|L}PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}C(Carbamidomethyl (C))[RK]AAT{M(Oxidation (M))|F};[YN]{I|L}C(Carbamidomethyl (C))[RK]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};{I|L}[YN]PR{M(Oxidation (M))|F}WT{M(Oxidation (M))|F};[YN]{I|L}C(Carbamidomethyl (C))[RK]{I|L}[YN];[YN]{I|L}[CG][RK]{I|L}[YN];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[EP]RPWW 7.1377;4.8728;4.283;3.5634;3.4567;2.7157;1.5136 +;-;-;-;-;-;- + 303 NaN NaN 236309 NaN 14927 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18761 78.215 NaN 346090 35 0 42331 0.261 + 17451 LYSGPDRYIF 10 73 615.8116347154107 1229.6087164976213 2 616.2993774414062 MULTI HCD FTMS 0 0 0 18759 37134.57421875 0.24510633077605656 7 -0.20013427734375 2 Unmodified _LYSGPDRYIF_ REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__nc|ENSG00000008710|P98161-2|PKD1;REV__nc|ENSG00000008710|P98161-3|PKD1 21.536976647645854 0.3096624038397699 2 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 62.445 0 0 5.0785 0 0 0 127.0963053136178 127.0963053136178 9.507046801327732 0 0 0 0 0 1.6989700043360187 1.5356668758921828 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0785 - 1582 NaN NaN 143699 NaN 14928 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18762 78.219 NaN 175380 35 0 25917 0.261 + -1 YLKKSGMLFT 10 52 602.3268335498565 NaN 0 602.3134765625 PEAK HCD FTMS 0 0 0 18759 11308.8759765625 0.4925146447148416 -1 0.02954864501953125 3 Oxidation (M) _YLKKSGM(Oxidation (M))LFT_ REV__tr|U7SUD2|U7SUD2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01190PE=3SV=1 13.90604991867851 0.3282826376286837 2 P 1 -1 6.9897 0 0 0.5812 0 0 526.2697426838942 576.2935248121312 1102.5632674960252 0 0 0 0 0 0 0 0 0 P 0.5812 - 12 + NaN NaN 119385.4 NaN 14929 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18763 78.222 NaN 109910 35 0 16292 0.262 -1 ALACLPAVML 10 45 529.7908845493774 1057.5672161655548 2 529.7916870117188 MULTI HCD FTMS 0 0 0 18759 35325.90234375 0.9195731626775824 -2 0.04913330078125 4 Carbamidomethyl (C) _ALAC(Carbamidomethyl (C))LPAVML_ ENSG00000170837|ENST00000304411|GPR27 12.531546534597751 0.39389615866941496 2 [YV]V{I|L} 4 -1 47.58 0 0 4.499 0 0 0 580.2608126275999 580.2608126275999 26.61089237444783 0 0 0 0 1.1382104921644451 2 0 0 [YV]V{I|L} 4.499 - 40 + NaN NaN 97040.5 NaN 14930 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18764 78.226 NaN 100520 35 0 10901 0.261 + 16303 LQSYMKLF 8 48 515.275634765625 NaN 0 515.275634765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LQSYMKLF_ REV__ENST00000508914.1_1_4:120473609-120484125:-|nuORF 4.75600775471527 0.38822285293237185 2 Q{I|L}AH 4 -1 12.027 0 0 1.1705 0 0 129.07868359199375 446.2044771783813 575.283160770375 0 0 0 0 0 0 0 0 0 Q{I|L}AH 1.1705 - 18 + NaN NaN 104520.6 NaN 14931 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18765 78.229 NaN 84044 35 0 19847 0.261 + 4369 EWNLYYPMQL 10 41 452.88067250591666 NaN 0 452.8806457519531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _EWNLYYPMQL_ ENSG00000130159|ENST00000270517|ECSIT;nc|ENSG00000130159|Q9BQ95-3|ECSIT 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101511.3 NaN 14932 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18766 78.232 NaN 53783 35 0 4225.1 0.261 + -1 HLCCSLTV 8 39 495.2297137479824 NaN 0 495.22998046875 PEAK HCD FTMS 0 0 0 18759 4798.26611328125 0.22058420538049667 -1 0.02954864501953125 7 2 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))C(Carbamidomethyl (C))SLTV_ REV__ENST00000334274.8_2_11:33094419-33094551:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92455.3 NaN 14933 3831 18759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18768 78.237 NaN 737000 35 0 261610 0.327 + 9740 HYATLYFVF 9 59 580.7922665817962 1159.5699802303923 2 580.7926635742188 MULTI HCD FTMS 0 0 0 18767 426131.1875 0.44664193423414206 8 -0.22296905517578125 1 Unmodified _HYATLYFVF_ ENSG00000157823|ENST00000336418|AP3S2;ENSG00000177879|ENST00000316788|AP3S1;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;nc|ENSG00000157823|P59780-2|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN 28.486842064014134 0.11819662193267319 2 Y{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 5 42.167 0 0 3.6364 0 0 585.2924219057575 0 585.2924219057575 0 22.870156338638594 0 0 0 1.5 0 0 0 + Y{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.6364 + + 72 NaN NaN 201434.6 NaN 14934 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18769 78.242 NaN 183240 35 0 8469.3 0.263 + 31241 VVQVQRAN 8 63 457.2642804947058 912.5140080562117 2 457.2641906738281 MULTI HCD FTMS 0 0 0 18767 147239.359375 0.19584373516621734 76 -2.132843017578125 2 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 4.75600775471527 0.5349361699807423 2 Q 1 7 13.099 0 0 1.4355 0 0 414.2472266100216 367.19709192447505 781.4443185344967 0 0 0 0 0 0.7614393726401688 0 0 0 + Q 1.4355 + + 39 + NaN NaN 116577.7 NaN 14935 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18770 78.245 NaN 270090 35 0 44457 0.261 + 18709 MYPYIFHVL 9 62 591.8040749161552 1181.5935968991103 2 591.8048095703125 MULTI HCD FTMS 0 0 0 18767 110027.921875 0.14419687691488473 19 -0.5373764038085938 3 Unmodified _MYPYIFHVL_ ENSG00000048828|ENST00000277165|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A 20.871210003555333 0.18003371494288972 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}HHV 5 5 29.705 0 0 2.514 0 0 0 511.2645923427228 511.2645923427228 15.012262311882765 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}HHV 2.514 - 39 NaN NaN 138694.4 NaN 14936 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18771 78.249 NaN 156150 35 0 15460 0.261 + 21529 PYLDKFFAL 9 48 557.3024295732822 1112.5903062133643 2 557.3026733398438 MULTI HCD FTMS 0 0 0 18767 89020.828125 0.6532971978777395 3 -0.09870147705078125 4 Unmodified _PYLDKFFAL_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 51.629811660486645 0.02929079705179888 2 PY{I|L}D 4 5 63.092 0 0 5.6707 0 0 0 621.3404024713499 621.3404024713499 46.102065882283796 0 0 0 0 1.305462187404089 2 0.3494850021680094 0 + PY{I|L}D 5.6707 + + 42 + NaN NaN 120723.7 NaN 14937 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18772 78.252 NaN 170200 35 0 25827 0.261 + 3554 EISSLADSFQ 10 64 548.7620201034799 1095.5094872737598 2 548.7472534179688 MULTI HCD FTMS 0 0 0 18767 14081.6650390625 0.11463675104956571 10 -0.28519439697265625 5 Unmodified _EISSLADSFQ_ POU3F4|p.L315F|1|0.52|ENSG00000196767|chrX:83509267-83509267|C/T|missense_variant 10.073929032068715 0.4168838835836452 2 C{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 4 9 13.672 0 0 1.248 0 0 585.2955327437923 0 585.2955327437923 0 2.7030375612038426 0 0 0 0 0 0.5 0 C{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]} 1.248 - 75 + NaN NaN 132025.6 NaN 14938 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18773 78.255 NaN 313420 35 0 24609 0.261 -1 LYSMQNSYF 9 74 584.7541949773591 1167.4938370215182 2 584.754638671875 MULTI HCD FTMS 0 0 0 18767 57414.6328125 0.7056891578165124 1 -0.03955078125 6 Oxidation (M) _LYSM(Oxidation (M))QNSYF_ ENSG00000162761|ENST00000342310|LMX1A;nc|ENSG00000162761|Q8TE12-2|LMX1A 12.531546534597751 0.2520865569484384 2 [Y{I|L}]{[CP]|[EA]}[WP]Y{I|L} 8 -1 14.895 0 0 1.2758 0 0 0 128.9528320830074 128.9528320830074 1.7069622716897488 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{[CP]|[EA]}[WP]Y{I|L} 1.2758 - 110 NaN NaN 142079.2 NaN 14939 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18774 78.259 NaN 186680 35 0 15927 0.261 + 35642 YYIFIPSKF 9 57 589.3186317703555 NaN 0 589.3184814453125 PEAK HCD FTMS 0 0 0 18767 62966.109375 0.4873145670660335 -18 0.514984130859375 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 2 {I|L} 1 8 14.732 0 0 1.2521 0 0 737.4109013807516 323.10300623111567 1060.5139076118674 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2521 + + 22 + NaN NaN 121569.4 NaN 14940 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18775 78.262 NaN 82332 35 0 11229 0.261 + -1 SHYHSKLLMSG 11 37 638.3112473458033 1274.6079417584065 2 638.312255859375 MULTI HCD FTMS 0 0 0 18767 39282.8203125 0.03875440879290978 20 -0.56671142578125 8 Oxidation (M) _SHYHSKLLM(Oxidation (M))SG_ REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense 3.876331618118854 0.4019203928379901 2 {I|L}{M(Oxidation (M))|F}[SG] 4 -1 21.198 0 0 1.6631 0 0 852.4283435386424 0 852.4283435386424 0 18.723637474483468 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F}[SG] 1.6631 + + 7 NaN NaN 106422.2 NaN 14941 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18776 78.265 NaN 351100 35 0 58560 0.261 + 19408 NPFYPEVEL 9 67 554.2710867799576 1106.5276206267151 2 554.2714233398438 MULTI HCD FTMS 0 0 0 18767 171186.0625 0.7671977760881296 -2 0.055755615234375 9 Unmodified _NPFYPEVEL_ ENSG00000196611|ENST00000315274|MMP1 26.268140514670165 0.13340543277302316 2 VE{I|L} 3 6 35.445 0 0 3.2033 0 0 747.3225162634102 0 747.3225162634102 0 24.47621246364342 0 0 0 0.9247425010840047 0 0 0 + VE{I|L} 3.2033 + + 106 NaN NaN 147843.5 NaN 14942 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18777 78.269 NaN 145240 35 0 37252 0.264 -1 0 43 404.1881635092436 806.3617740852873 2 404.1879577636719 MULTI HCD FTMS 0 0 0 18767 97612.359375 0.24580325512724327 30 -0.845367431640625 10 NaN NaN 2 Q 1 -1 3.0989 0 0 0.38431 0 0 172.1576858057935 503.1233309381469 675.2810167439404 0 0 0 0 0 0 0 0 0 Q 0.38431 - 3 + NaN NaN 97117.2 NaN 14943 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18778 78.272 NaN 232480 35 0 33447 0.261 + -1 YVARCDREDC 10 58 643.7655264831868 1285.5165000331735 2 643.7642822265625 MULTI HCD FTMS 0 0 0 18767 33162.6484375 0.20950169439560798 14 -0.406707763671875 11 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 9.38312468134398 0.42334543440173333 2 [YV]AS{M(Oxidation (M))|F} 5 -1 49.838 0 0 3.8769 0 0 0 715.2252901666624 715.2252901666624 25.720267186999862 0 0 0 0 1.0629529932484498 2 0 0 [YV]AS{M(Oxidation (M))|F} 3.8769 - 121 + NaN NaN 122301.1 NaN 14944 3832 18767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18780 78.277 NaN 1298600 35 0 152420 0.327 + 13569 KYPENFFLL 9 104 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 18779 897173 0.004560577474729615 108 -3.020599365234375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 86.33184430468982 0.004622086694044132 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 77.741 0 0 6.6468 6.6468 86.735 0 0 0 4.007014295496333 16.47817481888638 4.007014295496333 4.007014295496333 0 2.473197507588033 0 0 1.714559192431053 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV][PS]AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DA]|[EG]}AN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP][YK]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV][PS]AN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[EP][YK]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV][PS]AGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6.6468;6.3042;5.8595;5.5259;5.3071;5.2504;4.9645;4.5198;4.4631;4.2596 +;-;-;-;-;-;-;-;-;- + 1961 NaN NaN 282049.3 NaN 14945 3833 18779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18781 78.281 NaN 380240 35 0 49573 0.261 + 12848 KYFEVPVFI 9 67 571.3184810267439 1140.6224091202878 2 572.307861328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KYFEVPVFI_ ENST00000556312.5_1_14:58666935-58675849:+|nuORF 22.736283301280096 0.1639198954644489 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 9 7 + 55.817 0 0 4.8936 4.8936 89.941 0 0 0 23.283409326844264 34.332750158094996 23.283409326844264 23.743434768119016 0 0.2742275032520141 1.6989700043360187 0.3054621874040891 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DK{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[CA]|SS}[YV]TV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[CA]|SS}[YV]S{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[WT]|[RM]}[YV]TV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[WT]|[RM]}[YV]S{I|L}{I|L};[{M(Oxidation (M))|F}T]{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L}{I|L};[{M(Oxidation (M))|F}T]{I|L}{I|L}[TA]{M(Oxidation (M))|F}C{I|L}{I|L} 4.8936;2.812;2.7259;2.2393;2.1532;0.71349;0.67338 -;-;-;-;-;-;- 396 NaN NaN 143024.1 NaN 14946 3833 18779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18782 78.285 NaN 410850 35 0 48147 0.261 + 14787 LIHTSMLMT 9 79 523.7725736885079 1045.5305944438157 2 523.7730712890625 MULTI HCD FTMS 0 0 0 18779 106347.6328125 0.6578063375190686 -1 0.03955078125 3 Unmodified _LIHTSMLMT_ ENST00000296511.9_1_4:122589480-122589621:-|nuORF 26.88365393820708 0.12808753336095696 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSV[YT] 9 6 {[{M(Oxidation (M))|F}C]|[YS]} + + 61.943 3.7236 1.4889 5.9245 5.9245 63.783 0 0 0 0 37.9191104062609 0 0 0 2.1237125054200234 0 1.1989700043360187 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSV[YT] 5.9245 - 461 + NaN NaN 161196.9 NaN 14947 3833 18779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18783 78.288 NaN 880770 35 0 164930 0.261 + 24960 RYTFYVLEF 9 83 619.3162014226983 1236.6178499121966 2 619.3164672851562 MULTI HCD FTMS 0 0 0 18779 317640.21875 0.1740741033780746 -3 0.095306396484375 4 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 38.61474834105838 0.07170385841135779 2 {[QN]|[E{I|L}]|[KN]}V[EP]YV{I|L}E 9 6 60.328 0 0 4.8784 0 0 0 162.0563399941349 162.0563399941349 47.40246691962918 0 0 0 0 1.9247425010840047 1.3979400086720375 0.4247425010840047 0 {[QN]|[E{I|L}]|[KN]}V[EP]YV{I|L}E 4.8784 - 918 NaN NaN 224268 NaN 14948 3833 18779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18784 78.291 NaN 91262 35 0 7054.9 0.262 -1 NLGMIALIQ 9 46 515.782296089064 NaN 0 515.7820434570312 PEAK HCD FTMS 0 0 0 18779 4828.232421875 0.025436843369495105 29 -0.805816650390625 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))NLGM(Oxidation (M))IALIQ_ ENSG00000279395|ENST00000625203|OR5L1;OR5L1|p.S52I|1|0.25|ENSG00000279395|chr11:55811621-55811621|G/T|missense_variant 20.453626601364224 0.18435338882370536 2 Q{I|L}A 3 -1 21.995 0 0 2.1363 0 0 131.09372238917803 583.2531221979124 714.3468445870903 0 0 0 0 0 0.8807196863200843 0 0 0 Q{I|L}A 2.1363 - 22 + NaN NaN 116136.5 NaN 14949 3833 18779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18785 78.295 NaN 151880 35 0 7494.1 0.261 + 15542 LPDPRELIEI 10 56 597.8400347815957 1193.6655166299913 2 598.3397827148438 MULTI HCD FTMS 0 0 0 18779 40338.9375 0.09386918208881594 -17 0.49880218505859375 6 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 20.580933911654288 0.31860490502175054 2 {I|L}PD 3 7 28.416 0 0 2.3806 0 0 0 865.4789857719243 865.4789857719243 18.95242492728684 0 0 0 0 0.5 0 0.5 0 + {I|L}PD 2.3806 + + 144 + NaN NaN 141187 NaN 14950 3833 18779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18787 78.3 NaN 2236400 35 0 343840 0.327 + 13806 KYPSPFFVF 9 100 566.2972883717671 1130.580023810334 2 566.2975463867188 MULTI HCD FTMS 0 0 0 18786 1284524.625 0.011555800148386404 39 -1.1013870239257812 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 99.79894945604345 0.0042691968066200965 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 77.039 0 0 6.8141 6.8141 92.988 0 0 0 12.336944500037788 46.28095057831773 12.336944500037788 21.9109769040858 0 2.774227503252014 0 0.9749073637206093 0.6694451763165201 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][WE]K{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}PSAA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[PS][YK]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.8141;4.8761;4.6623;4.3844;4.377;4.1889;3.8519;3.823;3.7669;3.7351 +;-;-;-;-;-;-;-;-;- + 1732 NaN NaN 440660.7 NaN 14951 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18788 78.304 NaN 2029000 35 0 207420 0.261 + 6411 FPHLTVVLL 9 100 519.820981901874 1037.627410870548 2 519.821044921875 MULTI HCD FTMS 0 0 0 18786 2838401.75 0.24884269020664695 -6 0.17731475830078125 2 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 81.86404211737425 0.005249203329642222 2 {I|L}TVV{I|L}{I|L} 6 3 62.797 0 0 6.052 0 0 381.1795203464152 0 381.1795203464152 0 16.56627816298495 0 0 0 1.579689690656103 0 1.110924374808178 0 + {I|L}TVV{I|L}{I|L} 6.052 + + 1063 NaN NaN 400080.4 NaN 14952 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18789 78.308 NaN 1489600 35 0 157750 0.261 + 34790 YQTPRLWLF 9 97 612.3322255460869 1222.6498981589737 2 612.3323974609375 MULTI HCD FTMS 0 0 0 18786 885478.875 0.40838200424418414 -5 0.13782501220703125 3 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 92.65332237495696 0.004456439685314431 2 [YQ]T[RP]{I|L}W{I|L}{M(Oxidation (M))|F} 9 0 + 79.944 0 0 6.5386 6.5386 93.854 0 0 0 14.889917747712644 69.69659678281481 14.889917747712644 43.21456278567765 0 2.305462187404089 0 1.5044321917401078 0.7742275032520141 + + [YQ]T[RP]{I|L}W{I|L}{M(Oxidation (M))|F};[YQ]R[TP]{I|L}W{I|L}{M(Oxidation (M))|F};[QT]Y[RP]{I|L}W{I|L}{M(Oxidation (M))|F};[QT][RP]Y{I|L}W{I|L}{M(Oxidation (M))|F};[NP]HV[TP]{I|L}W{I|L}{M(Oxidation (M))|F} 6.5386;3.0041;2.5372;1.6358;1.2117 +;-;-;-;- + 308 NaN NaN 331376.2 NaN 14953 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18790 78.311 NaN 599210 35 0 29038 0.263 + 30901 VQVAGKAER 9 79 479.2775341566531 956.5405153801062 2 479.2774353027344 MULTI HCD FTMS 0 0 0 18786 483803.53125 0.48330427793089736 -17 0.4988555908203125 4 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 2 V 1 8 6.5938 0 0 0.68934 0 0 630.347291358425 224.09742151431877 854.4447128727437 0 0 0 0 0 0.5 0 0 0 + V 0.68934 + + 39 + NaN NaN 194106.5 NaN 14954 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18791 78.314 NaN 292120 35 0 15694 0.261 + 26308 SRSGKKSPK 9 71 487.79076122415506 973.5669695151101 2 487.7906799316406 MULTI HCD FTMS 0 0 0 18786 258629.21875 0.29073276670642806 -17 0.4988555908203125 5 Unmodified _SRSGKKSPK_ REV__ENST00000467136.5_1_X:30854677-30861194:-|nuORF 3.5964929083625545 0.32375295897743744 2 {M(Oxidation (M))|F}S 2 -1 1.766 0 0 0.18139 0 0 281.1848349962227 455.26642786197505 736.4512628581978 0 0 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}S 0.18139 - 14 + NaN NaN 154193.2 NaN 14955 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18792 78.318 NaN 256990 35 0 20013 0.261 + 232 AFDLIEHYF 9 57 577.7794285974932 1153.5443042617862 2 577.779541015625 MULTI HCD FTMS 0 0 0 18786 146498.953125 0.386983085383376 3 -0.08860015869140625 6 Unmodified _AFDLIEHYF_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant 85.27202061508552 0.004649858145912257 2 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F} 9 0 + 80.385 0 0 6.9686 6.9686 91.258 0 0 0 5.6424927368725974 66.89055965521284 5.6424927368725974 10.440680443502757 0 3.1549471895720984 0 0.3252574989159953 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}EHY{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}E{I|L}{I|L}EHY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}A{I|L}{I|L}EHY{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}{I|L}E[W{M(Oxidation (M))|F}]N;{[CT]|[{M(Oxidation (M))|F}G]}E{I|L}{I|L}E[W{M(Oxidation (M))|F}]N;{[{M(Oxidation (M))|F}D]|MM}A{I|L}{I|L}E[W{M(Oxidation (M))|F}]N 6.9686;6.0635;6.0132;4.6448;3.7397;3.6895 +;-;-;-;-;- + 184 NaN NaN 134440.5 NaN 14956 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18793 78.321 NaN 220720 35 0 26145 0.261 + 21595 PYNPILGETF 10 63 575.7918752455935 1149.5691975579869 2 575.7923583984375 MULTI HCD FTMS 0 0 0 18786 77577.0390625 0.4389372689303298 3 -0.08860015869140625 7 Unmodified _PYNPILGETF_ ENSG00000021762|ENST00000263650|OSBPL5;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8 23.789781309258295 0.28859042913526417 2 {I|L}WT{M(Oxidation (M))|F} 4 7 29.68 0 0 2.5819 0 0 584.2953968732437 0 584.2953968732437 0 3.482587709797329 0 0 0 0.9247425010840047 0 0 0 {I|L}WT{M(Oxidation (M))|F} 2.5819 - 157 NaN NaN 121947.6 NaN 14957 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18794 78.324 NaN 107370 35 0 29007 0.264 + 6043 FPDTPLAL 8 37 437.23932298359153 872.4640930339831 2 437.2393798828125 MULTI HCD FTMS 0 0 0 18786 107984.5546875 0.23924606148187746 13 -0.36707305908203125 8 Unmodified _FPDTPLAL_ ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906|ILF3 19.438996006549623 0.45076845602799126 2 A{I|L} 2 6 30.969 0 0 3.5496 0 0 670.3329417662081 0 670.3329417662081 0 30.969100130080562 0 0 0 1 0 0 0 + A{I|L} 3.5496 + + 13 + NaN NaN 109297.4 NaN 14958 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18795 78.328 NaN 177190 35 0 22066 0.261 + 15763 LPFSAGPTDVL 11 50 558.7999845758677 1115.5854162185353 2 558.8005981445312 MULTI HCD FTMS 0 0 0 18786 108919.8671875 1 0 0 9 Unmodified _LPFSAGPTDVL_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 20.41453444215458 0.279209903849948 2 M{I|L}{M(Oxidation (M))|F} 3 10 26.198 0 0 2.3484 0 0 706.3870957613073 0 706.3870957613073 0 0.22878745280337398 0 0 0 0 0 0 0 M{I|L}{M(Oxidation (M))|F} 2.3484 - 73 + NaN NaN 118185.9 NaN 14959 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18796 78.331 NaN 165450 35 0 9579.4 0.261 + 15543 LPDPRELIEI 10 60 597.8400347815957 1193.6655166299913 2 598.34033203125 MULTI HCD FTMS 0 0 0 18786 67854.390625 0.1578979651881949 -16 0.46605682373046875 10 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 17.44264345198275 0.3479594151168503 2 {I|L}E{I|L} 3 7 23.188 0 0 1.9426 0 0 820.4465199201187 0 820.4465199201187 0 6.505149978319906 0 0 0 0 0 0 0 + {I|L}E{I|L} 1.9426 + + 194 NaN NaN 118396.4 NaN 14960 3834 18786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18798 78.336 NaN 1258600 35 0 90587 0.327 + 34571 YPLLLKEIL 9 98 551.3495610662669 1100.6845691993337 2 551.349853515625 MULTI HCD FTMS 0 0 0 18797 460049.78125 0.40058289933385266 -5 0.15445709228515625 1 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 134.295615338601 0.00034446139420701925 2 YP{I|L}{I|L}{I|L}KE{I|L}{I|L} 9 0 + 99.478 0 0 9.0378 9.0378 95.503 0 0 0 14.590606190045108 14.590606190045108 14.590606190045108 14.590606190045108 0 2.6989700043360187 1.6989700043360187 1.7416440611282624 0 + + YP{I|L}{I|L}{I|L}KE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}KE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}K{I|L}E{I|L};[{I|L}P]Y{I|L}{I|L}K{I|L}E{I|L};[{I|L}P]Y{I|L}{I|L}KE{I|L}{I|L};YP{I|L}K{I|L}{I|L}{I|L}E{I|L};[Y{I|L}]P{I|L}{I|L}K{I|L}E{I|L};[Y{I|L}]P{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}K{I|L}E{I|L};[{I|L}P]{I|L}Y{I|L}KE{I|L}{I|L} 9.0378;7.7122;7.0772;6.587;6.551;6.3766;5.792;5.756;5.6992;5.6633 +;+;-;-;-;-;-;-;-;- + 1017 + NaN NaN 272925.5 NaN 14961 3835 18797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18799 78.34 NaN 359490 35 0 46613 0.261 -1 FAMMLLMGTL 10 74 572.283833960288 1142.553114987376 2 572.283935546875 MULTI HCD FTMS 0 0 0 18797 62311.1484375 0.31176345458912 1 -0.01953125 2 Oxidation (M) _FAMM(Oxidation (M))LLMGTL_ ENSG00000124089|ENST00000243911|MC3R 19.256988751693697 0.33098864134661865 2 {I|L}{M(Oxidation (M))|F}CPM 5 -1 40.049 0 0 3.5053 0 0 533.2841664044937 0 533.2841664044937 0 7.6097615761804605 0 0 0 1.1861818737241734 0 0 0 {I|L}{M(Oxidation (M))|F}CPM 3.5053 - 316 NaN NaN 148611.1 NaN 14962 3835 18797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18800 78.344 NaN 743590 35 0 352910 0.261 + 468 ALPYFWEHF 9 67 605.2905095100588 1208.5664660869174 2 605.2904052734375 MULTI HCD FTMS 0 0 0 18797 226518.40625 0.1908288343369637 -5 0.15445709228515625 3 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 43.77239144664712 0.04802738721622131 2 [{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]} 9 0 + 45.811 0 0 3.7905 3.7905 82.779 0 0 0 22.254406279932653 4.137342758552691 4.137342758552691 4.9080374776506375 0 1.6237125054200234 0 0.3252574989159953 0 + + [{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]};YY[YQ]{M(Oxidation (M))|F}RRN;[{I|L}A]PY{M(Oxidation (M))|F}W[NG]QN;[{I|L}A][C(Carbamidomethyl (C))S]W{M(Oxidation (M))|F}[QA]{I|L}N;[{I|L}A][C(Carbamidomethyl (C))S]W{M(Oxidation (M))|F}[KA]{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}[KA]{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}[QA]{I|L}N;[{I|L}A][C(Carbamidomethyl (C))S]W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}A];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[{I|L}A] 3.7905;3.3844;2.9721;2.7817;2.7817;2.3679;2.3679;1.2957;0.88199 +;-;-;-;-;-;-;-;- + 251 + NaN NaN 207116 NaN 14963 3835 18797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18801 78.347 NaN 324260 35 0 23533 0.261 + 19848 NYAWVYYHL 9 63 614.7929572147666 NaN 0 614.7928466796875 PEAK HCD FTMS 0 0 0 18797 138908.734375 0.7917112608537754 -16 0.47606658935546875 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 75.76082778847304 0.004376151807685402 2 {M(Oxidation (M))|F}AWVY 5 5 42.457 0 0 3.4586 0 0 130.0718020254331 428.19358240299067 558.2653844284238 0 0 0 0 0 2.110924374808178 0 0 0 {M(Oxidation (M))|F}AWVY 3.4586 - 128 + NaN NaN 132920.3 NaN 14964 3835 18797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18802 78.351 NaN 114010 35 0 28592 0.263 + 20502 PDFSAGYII 9 40 491.7476190524035 981.480685171607 2 491.7477111816406 MULTI HCD FTMS 0 0 0 18797 47490.625 0.3505794411237274 3 -0.075225830078125 5 Unmodified _PDFSAGYII_ ENSG00000177291|ENST00000321660|GJD4 12.531546534597751 0.2520865569484384 2 D{I|L}{I|L} 3 6 33.94 0 0 3.4581 0 0 622.2745228498062 0 622.2745228498062 0 33.94016261540408 0 0 0 0.5 0 0.4247425010840047 0 D{I|L}{I|L} 3.4581 - 6 NaN NaN 113740.7 NaN 14965 3835 18797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18804 78.355 NaN 1027400 35 0 159910 0.327 + 26958 SYLITSVEL 9 78 512.7817259708847 1023.5488990085695 2 512.7818603515625 MULTI HCD FTMS 0 0 0 18803 608694.375 0.6383040638058288 2 -0.055694580078125 1 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 131.26759243768294 0.0005280990274065272 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 9 0 + 84.333 0 0 8.2392 8.2392 97.633 0 0 0 3.65279269351241 49.3348435778082 3.65279269351241 84.332750158095 0 2.4802046884880937 0 1.4916440611282626 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}TSVE{I|L} 8.2392 + + 696 NaN NaN 245723.9 NaN 14966 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18805 78.36 NaN 535770 35 0 142890 0.261 + 20096 NYIPRFWTF 9 68 622.3162503270299 1242.6179477208598 2 622.3163452148438 MULTI HCD FTMS 0 0 0 18803 310238.8125 0.023874185737782036 24 -0.6747055053710938 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 72.96794272382148 0.008127836904478181 2 [YN]{I|L}PW[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F} 9 2 + 61.581 0 0 4.9557 4.9557 83.457 0 0 0 2.790660227393772 2.790660227393772 2.790660227393772 2.790660227393772 0 2.138210492164445 1.6989700043360187 0.7059771852360797 0.3807196863200844 [YN]{I|L}PW[R{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[YN]{I|L}P[RV]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F};[YN][RP][QP]P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}P[RV][EC][H{I|L}];[QP]{M(Oxidation (M))|F}{[SA]|[TG]}[QP]P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YC]|[HE]}AA{M(Oxidation (M))|F}{[TV]|[{I|L}S]}P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.9557;4.7311;3.7103;2.7741;2.7567;1.9463 -;-;-;-;-;- 254 + NaN NaN 167241.4 NaN 14967 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18806 78.363 NaN 240040 35 0 14390 0.261 + 25389 SEIELFRVF 9 66 570.3084228796552 1138.6022928261102 2 570.3086547851562 MULTI HCD FTMS 0 0 0 18803 75089.75 0.19862619072535734 5 -0.13739013671875 3 Unmodified _SEIELFRVF_ ENSG00000144028|ENST00000323853|SNRNP200 55.50274090549119 0.023872834264864425 2 RV{M(Oxidation (M))|F} 3 6 39.693 0 0 3.4861 0 0 718.3537006644491 0 718.3537006644491 0 14.44537812595911 0 0 0 1.3494850021680094 0 0 0 + RV{M(Oxidation (M))|F} 3.4861 + + 120 + NaN NaN 131909.5 NaN 14968 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18807 78.367 NaN 322300 35 0 102240 0.264 + 8737 HHGAGAFF 8 38 422.1985239190314 842.3824949048628 2 422.1988525390625 MULTI HCD FTMS 0 0 0 18803 141375.875 0.11402290586030758 -15 0.42984771728515625 4 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.7337 0 0 677.3044594818144 0 677.3044594818144 0 14.604093769761874 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7337 + + 1 + NaN NaN 156844.4 NaN 14969 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18808 78.37 NaN 412140 35 0 37557 0.261 + 17675 MAEVETNHF 9 72 539.2372957984494 1076.4600386636987 2 539.2371826171875 MULTI HCD FTMS 0 0 0 18803 37373.296875 0.39099557617057795 2 -0.055694580078125 5 Unmodified _MAEVETNHF_ REV__ENSG00000198730|ENST00000361367|CTR9 11.640296217721598 0.25978676193971967 2 V{I|L}{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 5 -1 21.146 0 0 1.9644 0 0 415.0996393490487 0 415.0996393490487 0 0.1772876696043113 0 0 0 0 0 0 0 V{I|L}{M(Oxidation (M))|F}H{M(Oxidation (M))|F} 1.9644 - 118 + NaN NaN 173920.3 NaN 14970 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18809 78.373 NaN 388550 35 0 31788 0.261 + 22973 QYVYWLHML 9 74 626.8124952751679 1251.6104376171356 2 626.8125 MULTI HCD FTMS 0 0 0 18803 193227.390625 0.7842491185360526 -4 0.11823272705078125 6 Unmodified _QYVYWLHML_ ENSG00000135926|ENST00000258412|TMBIM1 63.562846038646086 0.012597299157545023 2 [YV]H{I|L}WYVC(Carbamidomethyl (C)){I|L} 9 6 + 53.369 0 0 4.264 4.264 85.912 0 0 0 3.2568864632742844 9.265997036641593 3.2568864632742844 9.208187539523749 0 1.1307196863200843 0 0 0 [YV]H{I|L}WYVC(Carbamidomethyl (C)){I|L};[YV]H{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}H[YV];[YV]H{I|L}W{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];{[QN]|[E{I|L}]|[KN]}MYW{I|L}{[RE]|[WV]}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[NV]|[RG]}[Y{I|L}]WW;[YQ]VVVWWC(Carbamidomethyl (C)){I|L};[YV]QVVWWC(Carbamidomethyl (C)){I|L} 4.264;3.5283;2.7852;1.727;1.4268;1.3594;1.1067;1.0649 -;-;-;-;-;-;-;- 861 NaN NaN 155598.4 NaN 14971 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18810 78.377 NaN 96470 35 0 8285.4 0.263 + 30565 VNLLCATVF 9 52 490.2685703787751 978.5225878243502 2 490.2684326171875 MULTI HCD FTMS 0 0 0 18803 45438.80859375 0.18999087573536863 -15 0.42984771728515625 7 Unmodified _VNLLCATVF_ REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense 6.723162845929126 0.3000504726104499 2 P 1 -1 2.4743 0 0 0.25286 0 0 630.3446225917315 248.09636865787346 878.440991249605 0 0 0 0 0 0 0 0 0 P 0.25286 - 9 + NaN NaN 105556.3 NaN 14972 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18811 78.38 NaN 118330 35 0 23852 0.261 + 16669 LWIMIALA 8 59 465.77746469421976 929.5403764552395 2 465.77777099609375 MULTI HCD FTMS 0 0 0 18803 87276.25 0.18166143419674183 43 -1.2028121948242188 8 Unmodified _LWIMIALA_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 2.8892196856762586 0.5377058178582064 2 P 1 8 3.0989 0 0 0.33338 0 0 368.3520352460583 461.09995447330317 829.4519897193614 0 0 0 0 0 0 0 0 0 P 0.33338 - 3 + NaN NaN 121934.9 NaN 14973 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18812 78.383 NaN 114770 35 0 46480 0.261 -1 KMKVLFLP 8 38 496.3038720745111 990.5931912158222 2 496.30419921875 MULTI HCD FTMS 0 0 0 18803 60607.36328125 0.22279917482877382 -7 0.193572998046875 9 Oxidation (M) _KM(Oxidation (M))KVLFLP_ ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 123212 NaN 14974 3836 18803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18814 78.388 NaN 414620 35 0 128500 0.327 + 9741 HYATLYFVF 9 55 580.7922665817962 1159.5699802303923 2 580.7928466796875 MULTI HCD FTMS 0 0 0 18813 161908.359375 0.16970140867693845 13 -0.35353851318359375 1 Unmodified _HYATLYFVF_ ENSG00000157823|ENST00000336418|AP3S2;ENSG00000177879|ENST00000316788|AP3S1;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;nc|ENSG00000157823|P59780-2|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN 21.74664581756881 0.17247014374749275 2 Y{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4 5 41.414 0 0 3.5715 0 0 585.2910023419937 0 585.2910023419937 0 34.3360688456422 0 0 0 1.4247425010840047 0 0 0 + Y{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.5715 + + 37 NaN NaN 163152.5 NaN 14975 3837 18813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18815 78.393 NaN 395700 35 0 36243 0.261 -1 TPQFPDMIL 9 60 539.26788511357 1076.5212172939398 2 539.2682495117188 MULTI HCD FTMS 0 0 0 18813 104923.3984375 0.005386352990258266 99 -2.7714691162109375 2 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 12.240655878213236 0.2545997876781172 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3424380004323 0 832.3424380004323 0 6.505149978319906 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 35 NaN NaN 172460.9 NaN 14976 3837 18813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18816 78.396 NaN 139430 35 0 7767.6 0.261 + 31242 VVQVQRAN 8 58 457.2642804947058 912.5140080562117 2 457.2643737792969 MULTI HCD FTMS 0 0 0 18813 134688.71875 0.1791500715346829 81 -2.2569046020507812 3 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 4.75600775471527 0.5349361699807423 2 QV 2 6 15.886 0 0 1.7409 0 0 414.2455887220304 268.12348352603755 682.3690722480679 0 0 0 0 0 0.7302046884880937 0 0 0 + QV 1.7409 + + 31 + NaN NaN 119316.5 NaN 14977 3837 18813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18817 78.4 NaN 160720 35 0 9618.5 0.261 + 6792 FPRIQVTSL 9 56 530.8116931410136 1059.6088333488271 2 530.7947387695312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FPRIQVTSL_ ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN 7.289230182591677 0.29575926068275815 2 Y[RP]S{I|L}{M(Oxidation (M))|F} 6 6 20.2 0 0 1.9063 0 0 278.1629811017594 0 278.1629811017594 0 14.21352018225031 0 0 0 0 0 0.3054621874040891 0.8807196863200843 Y[RP]S{I|L}{M(Oxidation (M))|F} 1.9063 - 79 NaN NaN 111822.9 NaN 14978 3837 18813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18818 78.403 NaN 147880 35 0 22151 0.261 + 24264 RYFLPPYTF 9 44 602.3135811492392 1202.6126093652783 2 602.3140258789062 MULTI HCD FTMS 0 0 0 18813 58573.015625 0.5913372810262056 -12 0.3545989990234375 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.24021115267848145 2 N[KA]T{M(Oxidation (M))|F} 5 7 30.713 0 0 2.5539 0 0 623.2954716821907 0 623.2954716821907 0 23.723637474483468 0 0 0 1 0 0 0 N[KA]T{M(Oxidation (M))|F} 2.5539 - 12 NaN NaN 112681.8 NaN 14979 3837 18813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18819 78.406 NaN 161370 35 0 9188.5 0.263 + 4697 EYPICVLM 8 59 484.2358118015221 966.4570706698443 2 483.7963562011719 MULTI HCD FTMS 0 0 0 18813 22915.80859375 0.17714716594888175 -3 0.08860015869140625 6 Unmodified _EYPICVLM_ ENSG00000169594|ENST00000345382|BNC1 11.114462752807354 0.5120171699125776 2 EYP 3 5 20.802 0 0 2.1524 0 0 0 574.2687471979124 574.2687471979124 13.570006276765483 0 0 0 0 0 0 0 0 + EYP 2.1524 + + 118 + NaN NaN 130376.2 NaN 14980 3837 18813 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18821 78.411 NaN 1478600 35 0 179930 0.327 + 13570 KYPENFFLL 9 105 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 18820 943319.5625 0.004795153162443915 113 -3.1513595581054688 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 90.588 0 0 7.7452 7.7452 90.4 0 0 0 8.182503180159344 16.478174818886373 8.182503180159344 8.182503180159344 0 2.5356668758921828 0 0.2742275032520141 1.6906140654642814 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 7.7452;7.0456;6.9579;6.7325;6.2583;6.2583;6.1515;6.0329;6.0009;5.9855 +;-;-;-;-;-;-;-;-;- + 3576 NaN NaN 314209.6 NaN 14981 3838 18820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18822 78.416 NaN 136110 35 0 27983 0.264 -1 0 59 404.1881635092436 806.3617740852873 2 404.1881103515625 MULTI HCD FTMS 0 0 0 18820 93415.7734375 0.23523559248223086 36 -1.0128326416015625 2 NaN NaN 2 R 1 -1 4.6041 0 0 0.57097 0 0 59.02847438001226 588.2111300104124 647.2396043904247 0 0 0 0 0 0 0 0 0 R 0.57097 - 7 + NaN NaN 127185.1 NaN 14982 3838 18820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18823 78.419 NaN 104530 35 0 12774 0.261 + -1 YVARCDREDC 10 42 643.7655264831868 1285.5165000331735 2 643.766357421875 MULTI HCD FTMS 0 0 0 18820 28264.166015625 0.1785560246224589 20 -0.5632858276367188 3 Carbamidomethyl (C) _YVARC(Carbamidomethyl (C))DREDC_ REV__ENSG00000198542|ENST00000376180|ITGBL1;REV__ITGBL1|p.C384Vfs*23|1|0.33|ENSG00000198542|chr13:101706771-101706771|C/-|frameshift_variant;REV__nc|ENSG00000198542|O95965-2|ITGBL1;REV__nc|ENSG00000198542|O95965-3|ITGBL1 5.731851221503515 0.44496410492002586 2 [YV]AS{M(Oxidation (M))|F} 5 -1 43.456 0 0 3.3804 0 0 0 715.2294535532633 715.2294535532633 22.486512420283233 0 0 0 0 0.4247425010840047 2 0 0 [YV]AS{M(Oxidation (M))|F} 3.3804 - 27 + NaN NaN 121096.3 NaN 14983 3838 18820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18824 78.422 NaN 109090 35 0 22218 0.264 + 7207 FSNYPVGNSQY 11 32 425.86141845250023 1274.5624259577007 3 425.86212158203125 MULTI HCD FTMS 0 0 0 18820 8449.22265625 0.16731172798204202 -2 0.055694580078125 4 Unmodified _FSNYPVGNSQY_ ENST00000580958.5_1_18:23598320-23615185:-|nuORF 2.498486711656943 0.4079631525365919 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105709 NaN 14984 3838 18820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18825 78.426 NaN 136240 35 0 16311 0.261 + 32502 WFLLSALF 8 44 498.7816552963867 995.5487576595734 2 498.7811584472656 MULTI HCD FTMS 0 0 0 18820 58916.234375 0.4630665962973845 -7 0.20013427734375 5 Unmodified _WFLLSALF_ REV__ENSG00000205413|ENST00000379958|SAMD9 5.760428011301431 0.5334459684533844 2 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.8039 0 0 729.4220924757828 0 729.4220924757828 0 12.474250108400469 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.8039 - 15 + NaN NaN 114061.1 NaN 14985 3838 18820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18826 78.429 NaN 218350 35 0 14634 0.261 + 4812 EYVGVAARC 9 63 484.2358118015221 966.4570706698443 2 484.236083984375 MULTI HCD FTMS 0 0 0 18820 27811.443359375 0.2149921244064165 -2 0.055694580078125 6 Unmodified _EYVGVAARC_ ENST00000487350.5_1_1:155145426-155145600:-|nuORF 6.723162845929126 0.3000504726104499 2 EYP 3 7 19.041 0 0 1.9702 0 0 0 574.2654512994749 574.2654512994749 10.457574905606752 0 0 0 0 0 0 0 0 EYP 1.9702 - 50 + NaN NaN 128503.3 NaN 14986 3838 18820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18828 78.434 NaN 2672800 35 0 465270 0.327 + 24961 RYTFYVLEF 9 99 619.3162014226983 1236.6178499121966 2 619.31640625 MULTI HCD FTMS 0 0 0 18827 1463458.5 0.802008723016981 3 -0.088348388671875 1 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 87.25819977447905 0.004597812622239197 2 [YR]T{M(Oxidation (M))|F}YV{I|L}E{M(Oxidation (M))|F} 9 0 + 78.463 0 0 6.345 6.345 85.697 0 0 0 2.8137910156173263 7.322532288679184 2.8137910156173263 2.8137910156173263 0 2.589136830878453 0 0.75 0 + + [YR]T{M(Oxidation (M))|F}YV{I|L}E{M(Oxidation (M))|F};[YT]R{M(Oxidation (M))|F}YV{I|L}E{M(Oxidation (M))|F};[YR]T{M(Oxidation (M))|F}YVE{I|L}{M(Oxidation (M))|F};[YT]R{M(Oxidation (M))|F}YVE{I|L}{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}TYV{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}V{I|L}E{M(Oxidation (M))|F};[YR]{M(Oxidation (M))|F}TYVE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}V{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}VE{I|L}{M(Oxidation (M))|F};[YR]T{M(Oxidation (M))|F}YVE{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T][YR]YV{I|L}E{M(Oxidation (M))|F} 6.345;6.1174;5.9442;5.7167;5.7039;5.6468;5.3032;5.2461;5.2149;5.0862 +;-;-;-;-;-;-;-;-;- + 1725 NaN NaN 490046.1 NaN 14987 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18829 78.438 NaN 1849700 35 0 323030 0.261 + 13807 KYPSPFFVF 9 89 566.2972883717671 1130.580023810334 2 566.2974243164062 MULTI HCD FTMS 0 0 0 18827 1242199.125 0.011175032812625496 44 -1.235015869140625 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 111.28704002717404 0.0027322905094575235 2 PSM{I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 4 69.315 0 0 6.1309 0 0 291.1580611074398 0 291.1580611074398 0 46.00402612728253 0 0 0 2.8979400086720375 0 1.0114393726401687 0 PSM{I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 6.1309 - 937 NaN NaN 368540.8 NaN 14988 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18830 78.442 NaN 1084900 35 0 122810 0.261 + 8650 HFDLSVIEL 9 82 536.7872253062884 1071.5598976793767 2 536.7875366210938 MULTI HCD FTMS 0 0 0 18827 404857.28125 0.5100799131298568 -3 0.07861328125 3 Unmodified _HFDLSVIEL_ ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45;nc|ENSG00000093009|O75419-3|CDC45 30.636539890814138 0.10832830463492794 2 {I|L}{M(Oxidation (M))|F}{I|L}VEEV 7 5 42.496 0 0 3.9658 0 0 0 239.1034334772094 239.1034334772094 19.308641390345116 0 0 0 0 0.8494850021680094 0 0.8807196863200843 0 {I|L}{M(Oxidation (M))|F}{I|L}VEEV 3.9658 - 703 + NaN NaN 245593.1 NaN 14989 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18831 78.445 NaN 329500 35 0 48007 0.261 + 19409 NPFYPEVEL 9 70 554.2710867799576 1106.5276206267151 2 554.2715454101562 MULTI HCD FTMS 0 0 0 18827 55994.234375 0.25094713587595663 5 -0.13747406005859375 4 Unmodified _NPFYPEVEL_ ENSG00000196611|ENST00000315274|MMP1 16.149105407346934 0.22083165093524068 2 VE{I|L} 3 6 30.177 0 0 2.7272 0 0 747.3189564435562 0 747.3189564435562 0 15.767287836710718 0 0 0 0.6989700043360187 0 0 0 + VE{I|L} 2.7272 + + 132 NaN NaN 133625 NaN 14990 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18832 78.449 NaN 141260 35 0 13386 0.261 + 3958 EQIVSFYRV 9 53 570.8059667679497 1139.5973806026993 2 572.3067626953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EQIVSFYRV_ ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1 13.90604991867851 0.24021115267848145 2 EK{I|L}D 4 7 33.047 0 0 2.8999 0 0 0 651.3532198541624 651.3532198541624 5.255762612236907 0 0 0 0 0 0 0.6505149978319906 0 EK{I|L}D 2.8999 - 103 + NaN NaN 109393 NaN 14991 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18833 78.452 NaN 123070 35 0 6318.8 0.261 + 11612 IYTSFLRLNF 10 56 637.3501915655054 1272.6858301978107 2 637.3507690429688 MULTI HCD FTMS 0 0 0 18827 35233.04296875 0.6372751824357493 -1 0.022918701171875 6 Unmodified _IYTSFLRLNF_ ENSG00000160703|ENST00000409109|NLRX1;ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1 28.494509381512117 0.24525010509582015 2 [Y{I|L}]T{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 10 0 + 41.628 0 0 3.2709 3.2709 89.209 0 0 0 29.93378736925017 4.933787369250169 4.933787369250169 41.62848732905715 0 1.1237125054200234 2 0.4247425010840047 0 + + [Y{I|L}]T{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3.2709 + + 17 + NaN NaN 111370.1 NaN 14992 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18834 78.455 NaN 128780 35 0 12603 0.263 -1 NLGMIALIQ 9 58 515.7827979991328 NaN 0 515.7830810546875 PEAK HCD FTMS 0 0 0 18827 30709.31640625 0.901672793402921 1 -0.026123046875 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))NLGM(Oxidation (M))IALIQ_ ENSG00000279395|ENST00000625203|OR5L1;OR5L1|p.S52I|1|0.25|ENSG00000279395|chr11:55811621-55811621|G/T|missense_variant 20.453626601364224 0.18435338882370536 2 Q{I|L}A 3 -1 26.198 0 0 2.5446 0 0 131.09632086873154 583.2516573541624 714.347978222894 0 0 0 0 0 1 0 0 0 Q{I|L}A 2.5446 - 17 + NaN NaN 111727 NaN 14993 3839 18827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18836 78.46 NaN 8550100 35 0 999870 0.327 + 6412 FPHLTVVLL 9 93 519.820981901874 1037.627410870548 2 519.8213500976562 MULTI HCD FTMS 0 0 0 18835 11406410 1 0 0 1 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 114.94377779790601 0.0021353177819039447 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TVV{I|L}{I|L} 9 2 + 75.292 0 0 7.2562 7.2562 66.121 0 0 0 0 16.478174818886373 0 0 0 2.055462187404089 0 1.4436726795685342 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TVV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L};[{I|L}V]VTHP{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TV{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TV{I|L}V{I|L};VVP{[QD]|[EN]|[WG]|[KD]|[RS]}GVV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}VTV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}VTV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}{I|L}SV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}{I|L}SV{I|L}{I|L} 7.2562;7.2562;6.4715;6.2911;6.2911;6.1846;5.9883;5.9883;5.8949;5.8949 -;+;-;-;-;-;-;-;-;- + 2417 NaN NaN 526992.1 NaN 14994 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18837 78.465 NaN 2377900 35 0 239960 0.25 + 34791 YQTPRLWLF 9 109 612.3322255460869 1222.6498981589737 2 612.3323974609375 MULTI HCD FTMS 0 0 0 18835 1973034.625 0.9099616685950551 1 -0.03265380859375 2 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 99.75527289724121 0.004270341300239591 2 [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F} 9 0 + 83.452 0 0 6.8255 6.8255 94.902 0 0 0 15.202264589233394 68.25048156944675 15.202264589233394 65.35280958067105 0 2.473197507588033 0 1.4802046884880937 0.805462187404089 + + [YQ]TPR{I|L}W{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}R{I|L}W{I|L}{M(Oxidation (M))|F};[W{I|L}][KS][WK]TQ{M(Oxidation (M))|F} 6.8255;1.4803;0.67747 +;-;- + 957 NaN NaN 443598.4 NaN 14995 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18838 78.468 NaN 714650 35 0 38523 0.263 + 23932 RTRESPLV 8 84 479.2775341566531 956.5405153801062 2 479.2774658203125 MULTI HCD FTMS 0 0 0 18835 772717.375 0.7719199816589463 -11 0.298309326171875 3 Unmodified _RTRESPLV_ ENST00000433903.5_3_20:49628906-49639344:-|nuORF 4.75600775471527 0.5349361699807423 2 V 1 7 9.732 0 0 1.0174 0 0 630.3467725595968 224.09760461978752 854.4443771793843 0 0 0 0 0 0.4247425010840047 0 0 0 + V 1.0174 + + 14 + NaN NaN 204757.4 NaN 14996 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18839 78.471 NaN 420770 35 0 21025 0.261 + 26374 SSRKRLVE 8 91 487.79076122415506 973.5669695151101 2 487.7908020019531 MULTI HCD FTMS 0 0 0 18835 465856.34375 0.523682917037688 -11 0.298309326171875 4 Unmodified _SSRKRLVE_ REV__ENSG00000156234|ENST00000682537|CXCL13 4.75600775471527 0.5349361699807423 2 [RH]P 3 -1 7.9929 0 0 0.82099 0 0 0 580.3250010915351 580.3250010915351 3.5118377992493466 0 0 0 0 0 0 0 0.2742275032520141 [RH]P 0.82099 - 46 NaN NaN 152642.6 NaN 14997 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18840 78.475 NaN 197280 35 0 14665 0.261 -1 0 61 501.29047871913184 500.28320225253185 1 501.290771484375 MULTI HCD FTMS 0 0 0 18835 117646.125 0.24948488369226463 -11 0.298309326171875 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 2.9192 0 0 335.20425130213965 0 335.20425130213965 0 13.634993639681312 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.9192 - 7 + NaN NaN 118748 NaN 14998 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18841 78.478 NaN 133560 35 0 19788 0.261 -1 0 50 498.7816552963867 995.5487576595734 2 498.7818298339844 MULTI HCD FTMS 0 0 0 18835 99838.9375 0.78470861989934 -5 0.124267578125 6 NaN NaN 2 P 1 -1 6.9897 0 0 0.7021 0 0 550.3138466261735 345.15439783267817 895.4682444588516 0 0 0 0 0 0 0 0 0 P 0.7021 - 7 + NaN NaN 106238 NaN 14999 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18842 78.481 NaN 73495 35 0 15715 0.261 + 3893 EPPLFSAL 8 36 437.23932298359153 872.4640930339831 2 437.23944091796875 MULTI HCD FTMS 0 0 0 18835 49098.66015625 0.10878093724064555 19 -0.5437469482421875 7 Unmodified _EPPLFSAL_ REV__ENST00000544745.1_1_12:125432350-125432545:-|nuORF 18.13498045792455 0.4603629008820478 2 A{I|L} 2 -1 30.217 0 0 3.4634 0 0 670.3317127912125 0 670.3317127912125 0 28.622731327798547 0 0 0 0.9247425010840047 0 0 0 A{I|L} 3.4634 + + 14 NaN NaN 94893.1 NaN 15000 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18843 78.485 NaN 109490 35 0 11661 0.261 + 14605 LFQPQPLYL 9 44 559.8157879199774 1117.6170229067548 2 559.8157348632812 MULTI HCD FTMS 0 0 0 18835 40726.6796875 0.631501934536951 -8 0.22296905517578125 8 Unmodified _LFQPQPLYL_ REV__ENSG00000166348|ENST00000687698|USP54;REV__nc|ENSG00000166348|Q70EL1-10|USP54;REV__nc|ENSG00000166348|Q70EL1-7|USP54;REV__nc|ENSG00000166348|Q70EL1-8|USP54;REV__nc|ENSG00000166348|Q70EL1-9|USP54 7.289230182591677 0.29575926068275815 2 {I|L}Y{I|L} 3 -1 31.198 0 0 2.7915 0 0 710.37700087715 0 710.37700087715 0 31.197887582883936 0 0 0 0.5 0 0 0 {I|L}Y{I|L} 2.7915 + + 8 NaN NaN 106196.4 NaN 15001 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18844 78.488 NaN 159660 35 0 15023 0.261 + 35643 YYIFIPSKF 9 57 589.3186317703555 NaN 0 589.3191528320312 PEAK HCD FTMS 0 0 0 18835 79628.8359375 0.6162726599439831 -10 0.27872467041015625 9 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 2 {I|L} 1 8 13.979 0 0 1.1881 0 0 326.12817871502085 734.3882673961366 1060.5164461111574 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.1881 + + 14 + NaN NaN 116704.2 NaN 15002 3840 18835 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18846 78.493 NaN 2437800 35 0 769050 0.327 + 4911 FAIPLIEKL 9 83 522.3284730449058 1042.6423931566114 2 522.328125 MULTI HCD FTMS 0 0 0 18845 1086866.5 0.2858232530129195 -4 0.1045379638671875 1 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 96.36657018975838 0.004359138328518304 2 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 85.847 0 0 8.2336 8.2336 94.948 0 0 0 63.607770283605994 9.110367599119158 9.110367599119158 17.420051592891625 0 3.004432191740108 0 0.9876954943324545 0.2614393726401688 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}{[VA]|[{I|L}G]}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}T[VG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E;{[MS]|[{M(Oxidation (M))|F}A]}{I|L}PT{I|L}{I|L}[VG]{I|L};[{I|L}P]{I|L}EK{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[{I|L}P]{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L};[K{I|L}]E[{I|L}P]{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 8.2336;6.5628;5.4006;5.2727;4.8569;4.8078;2.0994;1.9116;0.36779;0.10478 +;+;-;-;-;-;-;-;-;- + 504 + NaN NaN 471126.5 NaN 15003 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18847 78.497 NaN 1903300 35 0 960870 0.261 + 469 ALPYFWEHF 9 73 605.2905095100588 1208.5664660869174 2 605.2904052734375 MULTI HCD FTMS 0 0 0 18845 776843.9375 0.654446698213347 1 -0.029571533203125 2 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 49.55428908609986 0.03219431099695407 2 [{I|L}A]PY{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F} 9 0 + 63.465 0 0 5.2512 5.2512 90.037 0 0 0 27.423618477080602 8.89506772603255 8.89506772603255 18.660743531280843 0 2.254432191740108 0 0.3807196863200844 0 + + [{I|L}A]PY{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L}WEH{M(Oxidation (M))|F};[{I|L}A]PY{M(Oxidation (M))|F}W[NG]QN;[{I|L}A]PY{M(Oxidation (M))|F}WW{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{I|L}WW{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{M(Oxidation (M))|F}WEH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NG]W{M(Oxidation (M))|F}[KA]{I|L}N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}A]{M(Oxidation (M))|F}WW{I|L}N;[{I|L}A]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}WEH{M(Oxidation (M))|F};[{I|L}A][C(Carbamidomethyl (C))S]W{M(Oxidation (M))|F}[KA]{I|L}N 5.2512;3.7072;3.5938;3.2745;3.1901;3.0676;2.8429;2.5505;2.4091;2.349 +;-;-;-;-;-;-;-;-;- + 578 + NaN NaN 385012.4 NaN 15004 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18848 78.501 NaN 1492900 35 0 93997 0.261 + 34572 YPLLLKEIL 9 98 551.3495610662669 1100.6845691993337 2 551.3497924804688 MULTI HCD FTMS 0 0 0 18845 342027.59375 0.29781647713055204 1 -0.029571533203125 3 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 134.295615338601 0.00034446139420701925 2 YP{I|L}{I|L}{I|L}KE{I|L}{I|L} 9 0 + 96.671 0 0 8.7828 8.7828 91.611 0 0 0 7.619478172486467 7.619478172486467 7.619478172486467 7.619478172486467 0 2.774227503252014 1.6989700043360187 1.7658715643802765 0 + + YP{I|L}{I|L}{I|L}KE{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]Y{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]{I|L}Y{I|L}KE{I|L}{I|L};{I|L}{I|L}PY{I|L}KE{I|L}{I|L};[Y{I|L}]P{I|L}{I|L}KE{I|L}{I|L};[{I|L}P]{I|L}{I|L}YKE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}K{I|L}{I|L}PY{I|L}{I|L};[{I|L}P]{I|L}{I|L}KEY{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}K{I|L}{I|L}{I|L}PY{I|L} 8.7828;8.0905;6.6802;5.7924;5.2981;4.935;4.7912;4.677;4.5217;4.4407 +;+;-;-;-;-;-;-;-;- + 1425 + NaN NaN 317781.6 NaN 15005 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18849 78.504 NaN 739660 35 0 229400 0.263 + 18520 MSSQASKS 8 57 413.19305416906394 824.3715554049279 2 413.19354248046875 MULTI HCD FTMS 0 0 0 18845 106140.375 0.025707520464642294 -10 0.281829833984375 4 Unmodified _MSSQASKS_ ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 4.75600775471527 0.5349361699807423 2 {I|L} 1 8 12.764 0 0 1.5484 0 0 693.2768421254342 0 693.2768421254342 0 0.2899597348884342 0 0 0 0 0 0 0 {I|L} 1.5484 - 21 + NaN NaN 200281.8 NaN 15006 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18850 78.508 NaN 410670 35 0 44044 0.261 + 15544 LPDPRELIEI 10 67 597.8400347815957 1193.6655166299913 2 597.8406372070312 MULTI HCD FTMS 0 0 0 18845 166373.765625 0.3040635447264573 -9 0.25562286376953125 5 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 32.89776655970281 0.20703914202719614 2 {[QN]|[E{I|L}]|[KN]}[RP]{I|L}DP{I|L}E{I|L} 10 5 + 52.923 0 0 4.4337 4.4337 82.147 0 0 0 7.525749891599531 33.00974855218239 7.525749891599531 1.4473404812020618 0 0.7059771852360797 1.2218487496163564 0 0 {[QN]|[E{I|L}]|[KN]}[RP]{I|L}DP{I|L}E{I|L};{I|L}PD[EP]{I|L}{I|L}RE{I|L};{I|L}PD[EP]{I|L}R{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}DPE{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}EDP{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[PA]VVDP{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}E[VP]E{I|L};{[QN]|[E{I|L}]|[KN]}[RP]{I|L}DEP{I|L}{I|L};{I|L}PD[EP]{I|L}{I|L}ER{I|L};{[QN]|[E{I|L}]|[KN]}[RP][DP]{I|L}{I|L}E{I|L} 4.4337;4.3124;4.0827;3.8625;3.7376;3.6659;3.4945;3.3379;3.3224;3.2626 -;-;-;-;-;-;-;-;-;- 1511 NaN NaN 148568.7 NaN 15007 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18851 78.511 NaN 155490 35 0 25713 0.263 + 29768 VEDKDLVL 8 57 465.7607958078832 929.5070386825664 2 465.7607116699219 MULTI HCD FTMS 0 0 0 18845 30492.333984375 0.2645822379740053 1 -0.029571533203125 6 Unmodified _VEDKDLVL_ REV__ENSG00000185567|ENST00000333244|AHNAK2;REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2 18.1463463914782 0.46027927471454505 2 {I|L}D{I|L}V{I|L} 5 -1 38.404 0 0 4.1317 0 0 358.14854628730626 0 358.14854628730626 0 22.919562702124452 0 0 0 0.7614393726401688 0 0.4247425010840047 0 {I|L}D{I|L}V{I|L} 4.1317 - 53 NaN NaN 103078.8 NaN 15008 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18852 78.514 NaN 647280 35 0 103320 0.261 + 15520 LPDPFTPNL 9 63 507.26873121728096 1012.5229095013619 2 507.26904296875 MULTI HCD FTMS 0 0 0 18845 182242.21875 0.3561397492930489 -2 0.05877685546875 7 Unmodified _LPDPFTPNL_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 53.832793166522166 0.026208976789938845 2 TNP{I|L} 4 7 49.483 0 0 4.8871 0 0 569.2844399905391 0 569.2844399905391 0 36.383578386120234 0 0 0 1 0 0.75 0.3054621874040891 TNP{I|L} 4.8871 - 117 NaN NaN 181739.3 NaN 15009 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18853 78.518 NaN 165030 35 0 9930.8 0.261 + -1 MTMLLFGLMA 10 68 572.283833960288 1142.553114987376 2 572.284423828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _MTM(Oxidation (M))LLFGLMA_ REV__ENSG00000188338|ENST00000614032|SLC38A3 14.838274106304384 0.3723198072575719 2 [{M(Oxidation (M))|F}V]YS 4 -1 34.781 0 0 3.0442 0 0 0 643.3455904596311 643.3455904596311 5.088643834802156 0 0 0 0 0.7614393726401688 1.3979400086720375 0 0 [{M(Oxidation (M))|F}V]YS 3.0442 - 316 + NaN NaN 120084.3 NaN 15010 3841 18845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18855 78.522 NaN 1897800 35 0 155130 0.327 + 24453 RYLDLFTSF 9 77 581.3004618451429 1160.5863707570857 2 581.3013305664062 MULTI HCD FTMS 0 0 0 18854 1135473.25 0.18759754414077598 -3 0.088348388671875 1 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 100.0907132914201 0.004261551473353346 2 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 92.259 0 0 7.9493 7.9493 94.146 0 0 0 2.922152515121212 7.143127141856397 2.922152515121212 15.030382041820758 0 3.1747425010840047 0 1.610924374808178 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[NP]AA{M(Oxidation (M))|F}{I|L}DAPV{M(Oxidation (M))|F};[NP]AA{M(Oxidation (M))|F}{I|L}WT{[QN]|[E{I|L}]|[KN]};[HK]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[RP]S{M(Oxidation (M))|F};[YR]{I|L}[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}T{[ES]|[DT]|[{I|L}C]};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}A][NS]WPV{M(Oxidation (M))|F};[YR][{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F}T{[ES]|[DT]|[{I|L}C]} 7.9493;6.6543;5.9397;5.3815;4.6162;2.0763;1.9971;1.7452;1.1992;1.055 +;-;-;-;-;-;-;-;-;- + 1810 + NaN NaN 387455.3 NaN 15011 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18856 78.527 NaN 514150 35 0 130410 0.261 + 20097 NYIPRFWTF 9 69 622.3162503270299 1242.6179477208598 2 622.3162841796875 MULTI HCD FTMS 0 0 0 18854 261719.109375 0.02014038984353591 30 -0.8558349609375 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 66.45667989310934 0.010234776021261575 2 [YN]{I|L} 3 6 45.19 0 0 3.6366 0 0 0 849.4052034247112 849.4052034247112 19.25968732272281 0 0 0 0 1 1.6989700043360187 0 0.7742275032520141 + [YN]{I|L} 3.6366 + + 210 NaN NaN 183185.2 NaN 15012 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18857 78.53 NaN 781300 35 0 291730 0.264 + 8738 HHGAGAFF 8 39 422.1985239190314 842.3824949048628 2 422.19873046875 MULTI HCD FTMS 0 0 0 18854 385915.625 0.31124985772428826 -9 0.24564361572265625 3 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.7337 0 0 677.3033455902129 0 677.3033455902129 0 14.119543704721593 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7337 + + 2 + NaN NaN 220225.2 NaN 15013 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18858 78.534 NaN 236550 35 0 18237 0.261 + 22974 QYVYWLHML 9 61 626.8124952751679 1251.6104376171356 2 626.8134765625 MULTI HCD FTMS 0 0 0 18854 101814.3359375 0.4132323215412045 2 -0.04912567138671875 4 Unmodified _QYVYWLHML_ ENSG00000135926|ENST00000258412|TMBIM1 63.562846038646086 0.012597299157545023 2 [YV]H{I|L}WYVC(Carbamidomethyl (C)){I|L} 9 6 + 56.749 0 0 4.5341 4.5341 86.263 0 0 0 5.6424927368725974 10.427965835756439 5.6424927368725974 9.208187539523749 0 0.9916440611282626 0 0 0 [YV]H{I|L}WYVC(Carbamidomethyl (C)){I|L};[YV]H{I|L}WYV[CG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}VYW{I|L}H[YV];[YV]H{I|L}W{[WS]|[C(Carbamidomethyl (C)){I|L}]}[YV];[YV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}W{I|L}H[YV] 4.5341;3.7984;2.8796;2.0572;0.64574 -;-;-;-;- 446 NaN NaN 129096.4 NaN 15014 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18859 78.537 NaN 367190 35 0 72388 0.263 + 18419 MPTIQITAL 9 41 494.2808660091477 986.5471790850954 2 494.28094482421875 MULTI HCD FTMS 0 0 0 18854 179889.140625 0.6641916242973951 -1 0.029571533203125 5 Unmodified _MPTIQITAL_ ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF 34.93206674587334 0.08860942999206235 2 Q{I|L}TA{I|L} 5 4 62.251 0 0 6.3099 0 0 442.22456557441564 0 442.22456557441564 0 51.79297219607513 0 0 0 1.9247425010840047 0 0.805462187404089 0 + Q{I|L}TA{I|L} 6.3099 + + 90 NaN NaN 150848 NaN 15015 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18860 78.54 NaN 602850 35 0 119970 0.261 + 26959 SYLITSVEL 9 73 512.7817259708847 1023.5488990085695 2 512.78173828125 MULTI HCD FTMS 0 0 0 18854 123597.953125 0.1296103249808573 8 -0.21942901611328125 6 Unmodified _SYLITSVEL_ ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 81.89019881105858 0.005240739447516426 2 {I|L}TSVE{I|L} 6 3 54.515 0 0 5.326 0 0 363.1795826642594 0 363.1795826642594 0 6.194072502053167 0 0 0 1.8851518780601921 0 1.2834281652289512 0 + {I|L}TSVE{I|L} 5.326 + + 416 NaN NaN 176338 NaN 15016 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18861 78.544 NaN 228400 35 0 62995 0.261 + 15024 LLNSYILSSH 10 45 573.8133223096469 1145.6120916860937 2 573.8133544921875 MULTI HCD FTMS 0 0 0 18854 81069.015625 0.8716058736273059 -1 0.029571533203125 7 Unmodified _LLNSYILSSH_ REV__ENSG00000054116|ENST00000373166|TRAPPC3;REV__ENST00000462715.1_1_1:36603336-36605749:-|nuORF;REV__nc|ENSG00000054116|O43617-2|TRAPPC3 9.38312468134398 0.42334543440173333 2 {I|L} 1 -1 6.9897 0 0 0.61013 0 0 590.3058305550375 439.19904504947505 1029.5048756045126 0 0 0 0 0 0 0 0 0 {I|L} 0.61013 + + 7 + NaN NaN 127612 NaN 15017 3842 18854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18863 78.549 NaN 1573900 35 0 176420 0.327 + 13571 KYPENFFLL 9 109 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 18862 1027838.75 0.005224787472320549 118 -3.2901229858398438 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 74.19965305603844 0.007729275404663812 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 83.005 0 0 7.0968 7.0968 88.077 0 0 0 5.253312076568903 53.81834282656263 5.253312076568903 5.568109453757657 0 2.555462187404089 0 0 1.4876954943324545 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}DVVN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.0968;6.6207;6.3095;6.0717;5.8334;5.8334;5.7555;5.7266;5.5956;5.5188 +;-;-;-;-;-;-;-;-;- + 4256 NaN NaN 346403.3 NaN 15018 3843 18862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18864 78.553 NaN 1617400 35 0 240580 0.261 + 20189 NYLDRFLSL 9 100 570.8059667679497 1139.5973806026993 2 570.8060302734375 MULTI HCD FTMS 0 0 0 18862 905643.125 0.032986346976098056 -7 0.193206787109375 2 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 135.86342318000737 0.0002493800389041242 2 NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 115.57 0 0 10.141 10.141 91.478 0 0 0 4.387568628841265 4.387568628841265 4.387568628841265 4.387568628841265 0 3.1237125054200234 1.6989700043360187 1.7728787452803374 0.5 + + NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DRS{M(Oxidation (M))|F}{I|L}{I|L};[YN]{I|L}DSR{M(Oxidation (M))|F}{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};{I|L}[YN]DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]S{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}D[{I|L}T][RV]{M(Oxidation (M))|F} 10.141;9.7563;8.8866;8.0291;6.8191;6.7869;6.2983;5.5948;5.2462;4.9675 +;+;-;-;-;-;-;-;-;- + 2088 + NaN NaN 341136.9 NaN 15019 3843 18862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18865 78.557 NaN 577130 35 0 96384 0.261 + 27442 SYVQTLVYI 9 68 543.2973919082062 1084.5802308832124 2 543.2976684570312 MULTI HCD FTMS 0 0 0 18862 323523.0625 0.7839105351670727 -2 0.055816650390625 3 Unmodified _SYVQTLVYI_ ENSG00000204267|ENST00000374897|TAP2;nc|ENSG00000204267|Q03519-2|TAP2 74.19965305603844 0.007729275404663812 2 [YV]SQT{I|L}VY{I|L} 9 2 + 99.179 0 0 9.1445 9.1445 93.519 0 0 0 13.494850021680094 16.478174818886373 13.494850021680094 9.208187539523749 0 2.2614393726401687 1.5228787452803376 1.274227503252014 0 [YV]SQT{I|L}VY{I|L};[YV]S[AG]T{I|L}VY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VQT{I|L}VY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V[AG]T{I|L}VY{I|L};[Y{I|L}][NS]T{I|L}VY{I|L} 9.1445;8.2955;7.9002;7.0512;6.9022 -;-;+;-;- + 427 NaN NaN 176897.8 NaN 15020 3843 18862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18866 78.56 NaN 287590 35 0 43397 0.261 -1 TPQFPDMIL 9 56 539.26788511357 1076.5212172939398 2 539.2681274414062 MULTI HCD FTMS 0 0 0 18862 141860.234375 0.007282544303782523 105 -2.9488906860351562 4 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 12.240655878213236 0.2545997876781172 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3422927309746 0 832.3422927309746 0 8.534087492996392 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 9 NaN NaN 127189 NaN 15021 3843 18862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18867 78.563 NaN 282590 35 0 32048 0.261 + 32276 VYTVVDEMFL 10 65 616.2994505061508 1230.5843480791016 2 616.2998046875 MULTI HCD FTMS 0 0 0 18862 125248.375 0.03354266189850314 -47 1.2740325927734375 5 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 99.79894945604345 0.00025031564603709316 2 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 91.623 0 0 7.4454 7.4454 91.927 0 0 0 16.962724883926654 64.91557245940342 16.962724883926654 9.515449934959719 0 3.024227503252014 1.6989700043360187 1.579689690656103 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DV{I|L}A{M(Oxidation (M))|F}{I|L};[YV]YEDV{I|L}A{M(Oxidation (M))|F}{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DVVTM{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}][PA]V{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVV[MT]{I|L};[Y{I|L}][PA]V{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.4454;6.6722;6.4096;5.7161;5.5766;4.8859;4.8033;4.324;4.0307;3.5507 -;-;-;-;-;-;-;-;-;- 731 NaN NaN 141432.3 NaN 15022 3843 18862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18868 78.567 NaN 141450 35 0 6715.9 0.262 -1 0 68 509.8037904894488 1017.5930280456976 2 509.80401611328125 MULTI HCD FTMS 0 0 0 18862 149043.15625 0.34832821655301077 -8 0.212738037109375 6 NaN NaN 2 {I|L} 1 -1 3.9794 0 0 0.39106 0 0 130.2031487505788 771.2796724908811 901.48282124146 0 0 0 0 0 0 0 0 0 {I|L} 0.39106 - 3 + NaN NaN 107347.7 NaN 15023 3843 18862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18870 78.572 NaN 1670300 35 0 299520 0.327 + 13808 KYPSPFFVF 9 80 566.2972883717671 1130.580023810334 2 566.2974853515625 MULTI HCD FTMS 0 0 0 18869 841767.9375 0.007572686321268008 49 -1.3816452026367188 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 88.95385435242217 0.004553379958619559 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 80.345 0 0 7.1065 7.1065 93.712 0 0 0 15.079219532557943 57.324229892291484 15.079219532557943 24.653251936605955 0 2.774227503252014 0 0.7302046884880937 0.9436726795685342 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][PS]{M(Oxidation (M))|F}AA{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][NP][YV]{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][PG]{M(Oxidation (M))|F}AA{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7.1065;4.9259;4.7297;4.4813;4.002;3.9759;3.9059;2.8443;2.8392;2.2413 +;-;-;-;-;-;-;-;-;- + 1041 NaN NaN 333531.6 NaN 15024 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18871 78.576 NaN 588480 35 0 115280 0.261 + 24962 RYTFYVLEF 9 71 619.3162014226983 1236.6178499121966 2 619.3162841796875 MULTI HCD FTMS 0 0 0 18869 348258.71875 0.1908537415336461 8 -0.232391357421875 2 Unmodified _RYTFYVLEF_ ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK 45.739877483867886 0.03899552410870734 2 {[QN]|[E{I|L}]|[KN]}V[EP]YV{I|L}E 9 6 61.137 0 0 4.9439 0 0 0 162.05662201804526 162.05662201804526 46.46204241499898 0 0 0 0 1.9247425010840047 1.5228787452803376 0.3807196863200844 0 {[QN]|[E{I|L}]|[KN]}V[EP]YV{I|L}E 4.9439 - 378 NaN NaN 189178.6 NaN 15025 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18872 78.58 NaN 148070 35 0 60589 0.263 + 5553 FLIGKMGII 9 34 496.3038720745111 990.5931912158222 2 496.303955078125 MULTI HCD FTMS 0 0 0 18869 33646.59375 0.12368849125660837 1 -0.02956390380859375 3 Unmodified _FLIGKMGII_ nc|ENSG00000280055|Q8N9X5|LINC02912 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103718 NaN 15026 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18873 78.583 NaN 287040 35 0 22831 0.261 + 19849 NYAWVYYHL 9 62 614.7929572147666 NaN 0 614.7921752929688 PEAK HCD FTMS 0 0 0 18869 101985.09375 0.5812647240966772 -7 0.18323516845703125 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 66.45667989310934 0.013251654575578966 2 HYYVWA 6 7 41.648 0 0 3.3927 0 0 131.09678306506072 274.08307825260005 405.17986131766077 0 0 0 0 0 2.305462187404089 0 0 0 HYYVWA 3.3927 - 136 + NaN NaN 150279.1 NaN 15027 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18874 78.586 NaN 349180 35 0 21431 0.263 + 5433 FIALCLSNV 9 73 490.2685703787751 978.5225878243502 2 490.2684631347656 MULTI HCD FTMS 0 0 0 18869 55318.26171875 0.23129930808857632 -7 0.18323516845703125 5 Unmodified _FIALCLSNV_ ENSG00000177990|ENST00000324472|DPY19L2;ENST00000414296.2_1_7:29736649-29749689:+|nuORF;nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;nc|ENSG00000291139|Q6ZN68|DPY19L2P2 13.50788311687929 0.24365122550260465 2 {[ET]|[MV]}{I|L}YQ{I|L}{[NV]|[RG]} 8 6 + 13.193 0 0 1.3482 1.3482 82.633 0 0 0 2.218487496163563 1.7050288537783072 1.7050288537783072 7.043650362227252 0 0 0 0.3807196863200844 0 {[ET]|[MV]}{I|L}YQ{I|L}{[NV]|[RG]};{[ET]|[MV]}{I|L}A[YG]{I|L}{[NV]|[RG]};{[ET]|[MV]}{I|L}Y[AG]{I|L}{[NV]|[RG]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}V]Q{I|L}{[NV]|[RG]} 1.3482;0.6284;0.40168;0.14632 -;-;-;- 503 NaN NaN 142453.6 NaN 15028 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18875 78.59 NaN 145500 35 0 9608.2 0.261 + 4698 EYPICVLM 8 55 484.2358118015221 966.4570706698443 2 484.236572265625 MULTI HCD FTMS 0 0 0 18869 48819.1328125 0.3773888661373754 4 -0.12812042236328125 6 Unmodified _EYPICVLM_ ENSG00000169594|ENST00000345382|BNC1 2.8892196856762586 0.5377058178582064 2 EY 2 6 16.198 0 0 1.676 0 0 0 671.3198840703925 671.3198840703925 4.208187539523749 0 0 0 0 0 0 0 0 + EY 1.676 + + 31 + NaN NaN 110396.8 NaN 15029 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18876 78.593 NaN 185350 35 0 31712 0.261 + 195 AETTTLFQF 9 50 529.2633448092326 1056.5121366852652 2 529.2634887695312 MULTI HCD FTMS 0 0 0 18869 50617.4375 0.5327937497245177 1 -0.02956390380859375 7 Unmodified _AETTTLFQF_ ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3 56.17704186161178 0.022929533404884107 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 8 5 + 60.551 0 0 5.7312 5.7312 84.732 0 0 0 2.838096733120281 9.819393642848482 2.838096733120281 2.838096733120281 0 1.805462187404089 0 1.1861818737241734 0 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[W{I|L}]CT{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};[W{I|L}]CT{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VS]T{[TV]|[{I|L}S]}Q{M(Oxidation (M))|F} 5.7312;5.4626;4.8546;4.5859;2.0609 -;-;-;-;- 172 NaN NaN 130650.4 NaN 15030 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18877 78.596 NaN 123280 35 0 15009 0.261 + 35375 YYDEIINAL 9 61 557.2765032885001 1112.5384536438 2 557.276611328125 MULTI HCD FTMS 0 0 0 18869 31264.751953125 0.37518351880216927 1 -0.02956390380859375 8 Unmodified _YYDEIINAL_ ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF 9.38312468134398 0.279288223203164 2 {I|L}{[QG]|[NA]}{I|L} 4 5 26.198 0 0 2.3548 0 0 683.2801158974739 0 683.2801158974739 0 11.593793813122062 0 0 0 1 0 0 0 + {I|L}{[QG]|[NA]}{I|L} 2.3548 + + 44 NaN NaN 107554.8 NaN 15031 3844 18869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18879 78.601 NaN 3906000 35 0 427990 0.327 + 6413 FPHLTVVLL 9 108 519.820981901874 1037.627410870548 2 519.8212890625 MULTI HCD FTMS 0 0 0 18878 3069232.75 0.2690796446910115 5 -0.14073944091796875 1 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 114.94377779790601 0.0021353177819039447 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L} 9 0 + 70.588 0 0 6.8028 6.8028 86.574 0 0 0 2.0065945054641787 21.39673870051609 2.0065945054641787 3.0102999566398125 0 1.841129063296272 0 1.5044321917401078 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TVV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TVV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TV{I|L}V{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}TV{I|L}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}VTV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}{I|L}SV{I|L}{I|L};[{I|L}V]VTHP{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}VTV{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}H{I|L}TV{I|L}{I|L}V;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{I|L}{I|L}SV{I|L}{I|L} 6.8028;6.5127;5.8378;5.5477;5.3793;5.3148;5.1629;5.0892;5.0492;5.0246 +;-;-;-;-;-;-;-;-;- + 2066 NaN NaN 687639.5 NaN 15032 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18880 78.605 NaN 1500100 35 0 194130 0.261 + 8651 HFDLSVIEL 9 88 536.7872253062884 1071.5598976793767 2 536.7875366210938 MULTI HCD FTMS 0 0 0 18878 746194.9375 0.9401314155022101 3 -0.0985565185546875 2 Unmodified _HFDLSVIEL_ ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45;nc|ENSG00000093009|O75419-3|CDC45 71.13359017698441 0.008721403657255008 2 SV{I|L}E{I|L} 5 4 59.737 0 0 5.5748 0 0 512.2368031232437 0 512.2368031232437 0 31.320684442917607 0 0 0 1.110924374808178 0 1.305462187404089 0 + SV{I|L}E{I|L} 5.5748 + + 515 NaN NaN 318868.2 NaN 15033 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18881 78.609 NaN 804900 35 0 67837 0.261 + 34783 YQTLSAKLLW 10 91 611.8448512661963 1221.6751495991925 2 612.3323364257812 MULTI HCD FTMS 0 0 0 18878 47210.203125 0.9146635040179297 2 -0.065673828125 3 Unmodified _YQTLSAKLLW_ ENSG00000184792|ENST00000332585|OSBP2;ENST00000496575.1_1_22:31289665-31289989:+|nuORF;nc|ENSG00000184792|Q969R2-2|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2 14.838274106304384 0.3723198072575719 2 [YQ]T[RP]{I|L}W{I|L} 8 6 35.169 0 0 2.8787 0 0 0 161.0781836311061 161.0781836311061 23.93175948177209 0 0 0 0 0 0 1.1549471895720984 0.75 [YQ]T[RP]{I|L}W{I|L} 2.8787 - 371 NaN NaN 208336.7 NaN 15034 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18882 78.612 NaN 378830 35 0 74666 0.261 + 7419 FVPLHSFFL 9 65 553.8052492750654 1105.5959456169307 2 553.805419921875 MULTI HCD FTMS 0 0 0 18878 217284.140625 0.6418468123217071 2 -0.065673828125 4 Unmodified _FVPLHSFFL_ ENSG00000197702|ENST00000334956|PARVA 36.04419817259434 0.08350412372117409 2 YA{M(Oxidation (M))|F}{I|L} 4 7 23.008 0 0 2.0811 0 0 593.331834861525 0 593.331834861525 0 0.6888128940781257 0 0 0 0.4247425010840047 0 0 0 YA{M(Oxidation (M))|F}{I|L} 2.0811 - 144 NaN NaN 129668 NaN 15035 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18883 78.616 NaN 347050 35 0 31249 0.261 + 19841 NYAWVYYHL 9 55 614.7930095767014 1227.5714662202026 2 615.2944946289062 MULTI HCD FTMS 0 0 0 18878 77774.5078125 0.6817448098910052 -5 0.1409149169921875 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 51.629811660486645 0.02929079705179888 2 [YN]AWVY{[WN]|[YH]}{I|L} 9 0 + 76.959 0 0 6.2692 6.2692 92.668 0 0 0 16.76477176880759 69.96970615301926 16.76477176880759 30 0 2.2059771852360797 1.6989700043360187 0 0.3807196863200844 + + [YN]AWVY{[WN]|[YH]}{I|L};[YN]{[RE]|[WV]}AY{[WN]|[YH]}{I|L};[YN]A[{M(Oxidation (M))|F}V]A{[RE]|[WV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.2692;3.8254;2.8103 +;-;- + 186 NaN NaN 157869 NaN 15036 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18884 78.622 NaN 84017 35 0 5922.6 0.465 + 25618 SGGGKRALAP 10 53 457.2642804947058 912.5140080562117 2 457.2640075683594 MULTI HCD FTMS 0 0 0 18878 106595.96875 0.14178377821172436 89 -2.5029449462890625 6 Unmodified _SGGGKRALAP_ ENSG00000101493|ENST00000443185|ZNF516;ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant 3.2813086475875832 0.45793521633868084 2 V 1 10 7.4743 0 0 0.81908 0 0 542.2944168470304 268.12275110416255 810.417167951193 0 0 0 0 0 0.3494850021680094 0 0 0 V 0.81908 - 18 + NaN NaN 107958.2 NaN 15037 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18885 78.629 NaN 269970 35 0 42177 0.261 + -1 TDTRTVCLL 9 49 539.7814493147986 NaN 0 539.76953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _TDTRTVC(Carbamidomethyl (C))LL_ REV__ENST00000443260.1_1_X:144712299-144712695:+|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 6.9897 0 0 0.64867 0 0 132.1188492461244 829.3189957447987 961.4378449909232 0 0 0 0 0 0 0 0 0 {I|L} 0.64867 + + 13 + NaN NaN 131952.2 NaN 15038 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18886 78.632 NaN 289340 35 0 86273 0.261 + 21633 PYPQYLAVI 9 51 532.2947938337325 1062.5750347342648 2 532.2948608398438 MULTI HCD FTMS 0 0 0 18878 119660.328125 0.7366984432797605 -1 0.02956390380859375 8 Unmodified _PYPQYLAVI_ ENSG00000063322|ENST00000315588|MED29 26.88365393820708 0.12808753336095696 2 {[VA]|[{I|L}G]}[WE]Y{I|L}AV{I|L} 9 4 + 65.691 0 0 6.1823 6.1823 93.795 0 0 0 17.420299789533402 58.701746761134714 17.420299789533402 65.6914468044949 0 1.3807196863200843 1.6989700043360187 0 0 {[VA]|[{I|L}G]}[WE]Y{I|L}AV{I|L} 6.1823 - 36 NaN NaN 129700.5 NaN 15039 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18887 78.636 NaN 186130 35 0 24005 0.261 + 30758 VPMEDINL 8 44 465.73369609038144 929.4528392475629 2 465.7333984375 MULTI HCD FTMS 0 0 0 18878 149242.84375 0.2799303633970452 -6 0.1670379638671875 9 Unmodified _VPMEDINL_ tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1 16.942295170755138 0.46913822049235215 2 {I|L}N{I|L} 3 5 34.693 0 0 3.7326 0 0 571.2316592948456 0 571.2316592948456 0 15.841218823962109 0 0 0 0.4247425010840047 0 0 0.4247425010840047 + {I|L}N{I|L} 3.7326 + + 86 NaN NaN 111482.3 NaN 15040 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18888 78.639 NaN 138170 35 0 9233.3 0.261 + 17116 LYLKELLNL 9 64 559.8444252733581 1117.674297613516 2 560.3465576171875 MULTI HCD FTMS 0 0 0 18878 69040.625 1 0 0 10 Unmodified _LYLKELLNL_ ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1 20.41453444215458 0.18397929046831515 2 {I|L}N{I|L} 3 6 28.672 0 0 2.5653 0 0 759.4508534162125 0 759.4508534162125 0 17.88023703596813 0 0 0 0.8494850021680094 0 0 0 + {I|L}N{I|L} 2.5653 + + 62 NaN NaN 104580.4 NaN 15041 3845 18878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18890 78.644 NaN 4467900 35 0 1524000 0.327 + 4912 FAIPLIEKL 9 76 522.3284730449058 1042.6423931566114 2 522.32861328125 MULTI HCD FTMS 0 0 0 18889 1243164.125 0.32692627313148365 1 -0.02285003662109375 1 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 96.36657018975838 0.004359138328518304 2 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 90.785 0 0 8.7072 8.7072 95.447 0 0 0 61.52340132801456 8.741436528314566 8.741436528314566 16.338031200885155 0 3.1549471895720984 0 1.1421590589602533 0.2742275032520141 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}T[VG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E;{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}{I|L}T[VG]{I|L};{[MS]|[{M(Oxidation (M))|F}A]}P{I|L}{I|L}{I|L}[K{I|L}]E 8.7072;7.1402;6.0833;5.8502;5.723;5.2654;4.7932;4.433;3.9753 +;+;-;-;-;-;-;-;- + 399 + NaN NaN 610703.6 NaN 15042 3846 18889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18891 78.648 NaN 849070 35 0 45473 0.261 + 19296 NLVKGPRSS 9 92 479.2775341566531 956.5405153801062 2 479.2774963378906 MULTI HCD FTMS 0 0 0 18889 803768.0625 0.8029386268984139 -5 0.15108489990234375 2 Unmodified _NLVKGPRSS_ ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 10.073929032068715 0.27331982688540024 2 Q 1 9 9.2917 0 0 0.97139 0 0 458.27292986600276 367.19716844554375 825.4700983115465 0 0 0 0 0 0.3807196863200844 0 0 0 Q 0.97139 - 107 + NaN NaN 212337.8 NaN 15043 3846 18889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18892 78.652 NaN 358600 35 0 19742 0.261 + 30464 VLSARSSRV 9 73 487.79076122415506 973.5669695151101 2 487.7908020019531 MULTI HCD FTMS 0 0 0 18889 245528.53125 0.2760058957788511 -5 0.15108489990234375 3 Unmodified _VLSARSSRV_ ENST00000274793.11_1_6:46690657-46703025:-|nuORF 3.2813086475875832 0.32614229037259 2 Q 1 9 5.4846 0 0 0.56335 0 0 475.29930294827244 367.1971529596313 842.4964559079037 0 0 0 0 0 0 0 0 0 Q 0.56335 - 27 + NaN NaN 156438.1 NaN 15044 3846 18889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18893 78.655 NaN 403670 35 0 15405 0.261 -1 0 76 501.29047871913184 500.28320225253185 1 501.290771484375 MULTI HCD FTMS 0 0 0 18889 335772.09375 0.712051176834995 -5 0.15108489990234375 4 NaN NaN 2 S{M(Oxidation (M))|F} 2 -1 15.93 0 0 3.1842 0 0 248.17248250331153 0 248.17248250331153 0 13.940162615404077 0 0 0 0 0 0.2742275032520141 0 S{M(Oxidation (M))|F} 3.1842 - 22 + NaN NaN 156794.3 NaN 15045 3846 18889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18894 78.659 NaN 235650 35 0 29510 0.261 + 10944 IYCTSNDDQVG 11 61 607.7556565625003 1213.4967601918006 2 607.756591796875 MULTI HCD FTMS 0 0 0 18889 28250.482421875 0.1921072750994016 1 -0.02285003662109375 5 Unmodified _IYCTSNDDQVG_ ENSG00000203710|ENST00000367049|CR1;ENSG00000203710|ENST00000367049|CR1;ENSG00000203710|ENST00000367049|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;nc|ENSG00000203710|P17927|CR1;nc|ENSG00000203710|P17927|CR1;nc|ENSG00000203710|P17927|CR1 5.731851221503515 0.39378271418728467 2 SV[{M(Oxidation (M))|F}E] 4 10 8.4164 0 0 0.69356 0 0 733.2944419318382 0 733.2944419318382 0 3.8913634289582957 0 0 0 0 0 0 0 SV[{M(Oxidation (M))|F}E] 0.69356 - 53 + NaN NaN 142377.9 NaN 15046 3846 18889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18895 78.662 NaN 166070 35 0 13523 0.262 + 5504 FLACISADR 9 60 498.25143128495677 994.4883096367136 2 498.7817687988281 MULTI HCD FTMS 0 0 0 18889 6306.51611328125 0.17627755435259113 2 -0.05573272705078125 6 Unmodified _FLACISADR_ ENSG00000184451|ENST00000332438|CCR10 8.593279151180031 0.2858735984551981 2 {M(Oxidation (M))|F}TS 3 7 14.218 0 0 1.4297 0 0 112.07296018997324 544.2534273736936 656.3263875636669 0 0 0 0 0 0 0 0.7742275032520141 0 {M(Oxidation (M))|F}TS 1.4297 - 94 + NaN NaN 109599.3 NaN 15047 3846 18889 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18897 78.667 NaN 8062300 35 0 703370 0.327 + 24454 RYLDLFTSF 9 109 581.3004618451429 1160.5863707570857 2 581.3009033203125 MULTI HCD FTMS 0 0 0 18896 5627706.5 0.9297831706251838 2 -0.05229949951171875 1 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 133.0521902211835 0.0004198702180815479 2 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 106.34 0 0 9.163 9.163 96.898 0 0 0 6.597404794731062 6.597404794731062 6.597404794731062 25.621126798852515 0 3.1747425010840047 1.0969100130080565 1.8556270500406937 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E[{I|L}A]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};VE[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};VE{I|L}[YR]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YR]{I|L}DYVVS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}{I|L}DVVS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YR]{I|L}YDVVS{M(Oxidation (M))|F};VE[VP][HV]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9.163;6.9554;6.8719;6.8712;5.9481;5.6216;5.5688;5.4195;5.2936;5.0288 +;-;-;-;-;-;-;-;-;- + 8849 + NaN NaN 983962.6 NaN 15048 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18898 78.671 NaN 1171200 35 0 449630 0.264 -1 GAGARHMQ 8 41 422.1985239190314 842.3824949048628 2 422.19879150390625 MULTI HCD FTMS 0 0 0 18896 581741.0625 0.46918759232798957 -4 0.1181182861328125 2 Oxidation (M) _GAGARHM(Oxidation (M))Q_ ENST00000334018.10_2_22:29655210-29655279:+|nuORF 0.7936320650641473 0.540814922690045 2 D 1 -1 2.4743 0 0 0.29372 0 0 586.261872201541 138.06708704166252 724.3289592432035 0 0 0 0 0 0 0 0 0 D 0.29372 - 3 + NaN NaN 276449.7 NaN 15049 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18899 78.675 NaN 1069000 35 0 69901 0.261 + 15545 LPDPRELIEI 10 99 597.8400347815957 1193.6655166299913 2 597.8404541015625 MULTI HCD FTMS 0 0 0 18896 413564.34375 0.7558273376857463 -3 0.09523773193359375 3 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 61.08992128646608 0.03745793995309655 2 {I|L}PYPD{I|L}{[VA]|[{I|L}G]}{I|L} 9 4 57.278 0 0 4.7985 0 0 0 209.05683313541252 209.05683313541252 35.315337867892325 0 0 0 0 1.035666875892183 1.3010299956639813 0.7614393726401688 0 {I|L}PYPD{I|L}{[VA]|[{I|L}G]}{I|L} 4.7985 - 1403 + NaN NaN 254533.4 NaN 15050 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18900 78.678 NaN 543080 35 0 91816 0.262 + 15521 LPDPFTPNL 9 63 507.26873121728096 1012.5229095013619 2 507.268798828125 MULTI HCD FTMS 0 0 0 18896 247714.640625 0.48408667658632315 4 -0.107818603515625 4 Unmodified _LPDPFTPNL_ ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 51.629811660486645 0.02929079705179888 2 TPN{I|L} 4 5 49.87 0 0 4.9253 0 0 569.2848290182031 0 569.2848290182031 0 41.19763938624216 0 0 0 1 0 0.805462187404089 0.28872548999643577 + TPN{I|L} 4.9253 + + 72 NaN NaN 160933.7 NaN 15051 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18901 78.681 NaN 842570 35 0 51606 0.261 + 14470 LEVYEMWRN 9 90 620.2952425978831 1238.575932262566 2 620.2955322265625 MULTI HCD FTMS 0 0 0 18896 241211.359375 0.4998507654640524 -2 0.065673828125 5 Unmodified _LEVYEMWRN_ ENSG00000132911|ENST00000255262|NMUR2 10.073929032068715 0.27331982688540024 2 YDA{I|L}WH{M(Oxidation (M))|F} 7 8 62.031 0 0 5.0083 0 0 288.14734747823593 0 288.14734747823593 0 28.646387799684874 0 0 0 2.774227503252014 0 0 0 YDA{I|L}WH{M(Oxidation (M))|F} 5.0083 - 1611 NaN NaN 217150.5 NaN 15052 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18902 78.685 NaN 593630 35 0 259550 0.261 + 470 ALPYFWEHF 9 73 605.2905095100588 1208.5664660869174 2 605.29052734375 MULTI HCD FTMS 0 0 0 18896 218084.40625 0.18372367049865884 7 -0.20284271240234375 6 Unmodified _ALPYFWEHF_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 15.248480904072842 0.22861284681709862 2 YY[YQ]{M(Oxidation (M))|F}RRN 8 7 + 34.895 0 0 2.8873 2.8873 81.95 0 0 0 4.515449934959719 0.4406804435027567 0.4406804435027567 4.515449934959719 0 0 2 0 0 YY[YQ]{M(Oxidation (M))|F}RRN;[{I|L}A]PY{M(Oxidation (M))|F}N[NS]{[{M(Oxidation (M))|F}H]|[RQ]};[{I|L}A][WC(Carbamidomethyl (C))]S{M(Oxidation (M))|F}[KA]{I|L}N;[{I|L}A]PY{M(Oxidation (M))|F}WE{[{M(Oxidation (M))|F}H]|[RQ]};[{I|L}A]PY{M(Oxidation (M))|F}WH[{M(Oxidation (M))|F}E];[{I|L}A]PY{M(Oxidation (M))|F}GG[NS]{[{M(Oxidation (M))|F}H]|[RQ]};[{I|L}A]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}WW{I|L}N;[{I|L}A][WC(Carbamidomethyl (C))]S{M(Oxidation (M))|F}{[VA]|[{I|L}G]}QQ 2.8873;2.5136;2.4736;2.4491;2.0248;1.7553;1.3657;0.9876 -;-;-;+;-;-;-;- + 196 NaN NaN 180562.5 NaN 15053 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18903 78.688 NaN 562570 35 0 131040 0.261 + 20098 NYIPRFWTF 9 58 622.3162503270299 1242.6179477208598 2 622.8179931640625 MULTI HCD FTMS 0 0 0 18896 206790.78125 0.0218631953437776 35 -0.9760818481445312 7 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 53.832793166522166 0.026208976789938845 2 [YN]{I|L} 3 6 44.749 0 0 3.6012 0 0 0 849.4048621815889 849.4048621815889 18.819459175083608 0 0 0 0 1 1.6989700043360187 0 0.7302046884880937 + [YN]{I|L} 3.6012 + + 66 NaN NaN 171843.5 NaN 15054 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18904 78.691 NaN 412840 35 0 23689 0.262 + 34573 YPLLLKEIL 9 66 551.3495610662669 1100.6845691993337 2 551.349609375 MULTI HCD FTMS 0 0 0 18896 336713.5625 0.2931893473458323 7 -0.20284271240234375 8 Unmodified _YPLLLKEIL_ ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant 82.5293158979368 0.005033931517079822 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 9 0 + 77.457 0 0 7.0372 7.0372 91.194 0 0 0 8.78530614985209 36.620768972555595 8.78530614985209 9.604093769761874 0 2.3807196863200843 1.6989700043360187 0.3807196863200844 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}{I|L}[K{I|L}]E{I|L};YP[K{I|L}]{I|L}{I|L}{I|L}E{I|L};[Y{I|L}]P{I|L}{I|L}[K{I|L}]E{I|L};[Y{I|L}]P{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};{I|L}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[{I|L}P]Y{I|L}{I|L}[K{I|L}]E{I|L};[{I|L}P]Y{I|L}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L};[Y{I|L}]{I|L}P{I|L}[K{I|L}]E{I|L};[Y{I|L}]{I|L}P{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{I|L} 7.0372;6.1646;6.0087;5.6384;5.6025;5.2825;5.2577;5.2217;4.4772;4.4412 +;-;-;-;-;-;-;-;-;- + 376 NaN NaN 153892.3 NaN 15055 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18905 78.695 NaN 383770 35 0 36683 0.261 + 21508 PYGSDFIRSI 10 72 577.7954995770741 1153.5764462209481 2 577.7957153320312 MULTI HCD FTMS 0 0 0 18896 159493.703125 0.4901332775317358 -3 0.09523773193359375 9 Unmodified _PYGSDFIRSI_ REV__ENSG00000010932|ENST00000617670|FMO1;REV__ENST00000469112.5_2_1:171244541-171251486:+|nuORF;REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF;REV__nc|ENSG00000010932|Q01740-2|FMO1 23.789781309258295 0.28859042913526417 2 N{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 8 -1 63.18 0 0 5.4769 0 0 177.04263503242345 0 177.04263503242345 0 53.71645960868548 0 0 0 2.048455006504028 0 0.3807196863200844 0.4247425010840047 N{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 5.4769 - 109 NaN NaN 142403.8 NaN 15056 3847 18896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18907 78.7 NaN 14841000 35 0 2204700 0.327 + 20190 NYLDRFLSL 9 121 570.8059667679497 1139.5973806026993 2 570.8068237304688 MULTI HCD FTMS 0 0 0 18906 12538358 0.45668610082866234 -2 0.05573272705078125 1 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 184.3555567057281 7.78523872066095E-13 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 124.54 0 0 10.928 10.928 95.509 0 0 0 10.07007180900061 10.07007180900061 10.07007180900061 10.07007180900061 0 2.8494850021680094 1.6989700043360187 0.8296896906561032 2.091129063296272 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DRS{M(Oxidation (M))|F}{I|L}{I|L};[YN]{I|L}D{I|L}[R{M(Oxidation (M))|F}]S{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]DR{M(Oxidation (M))|F}{I|L}S{I|L};A{M(Oxidation (M))|F}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YN]R{M(Oxidation (M))|F}{I|L}S{I|L};{I|L}[YN]DR{M(Oxidation (M))|F}{I|L}S{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L} 10.928;10.044;9.5805;8.4824;7.742;7.1819;7.0264;6.9931;6.8455;5.9804 +;+;-;-;-;-;-;-;-;- + 5931 NaN NaN 1021628.8 NaN 15057 3848 18906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18908 78.704 NaN 1121100 35 0 154380 0.261 + 13572 KYPENFFLL 9 81 585.8131605635726 1169.6117681939452 2 585.81298828125 MULTI HCD FTMS 0 0 0 18906 882963.5625 0.0044883469900950145 123 -3.4244918823242188 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 76.82478488871298 0.006879825292024087 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 78.527 0 0 6.714 6.714 89.748 0 0 0 5.558232855649891 53.21308932120188 5.558232855649891 9.208187539523749 0 2.504432191740108 0 0 1.7619229975844686 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YT]W{[CP]|[EA]}K{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YT]W{[CP]|[EA]}{M(Oxidation (M))|F}K{I|L}{I|L} 6.714;5.9267;5.3867;4.5994;4.4259;4.3235;3.806;3.6387;3.6191;3.125 +;-;-;-;-;-;-;-;-;- + 1572 NaN NaN 256762.5 NaN 15058 3848 18906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18909 78.708 NaN 2616700 35 0 976520 0.264 + 21066 PLYFGDGG 8 63 413.19305416906394 824.3715554049279 2 413.1935119628906 MULTI HCD FTMS 0 0 0 18906 986363.5625 0.2389002438379008 -3 0.0985565185546875 3 Unmodified _PLYFGDGG_ REV__ENSG00000182095|ENST00000430969|TNRC18;REV__nc|ENSG00000182095|O15417-2|TNRC18 2.8892196856762586 0.5377058178582064 2 {I|L} 1 -1 8.768 0 0 1.0636 0 0 155.09441680195818 553.1704195611936 708.2648363631517 0 0 0 0 0 0.6549471895720984 0 0 0 {I|L} 1.0636 + + 9 + NaN NaN 488731.6 NaN 15059 3848 18906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18910 78.711 NaN 678530 35 0 48024 0.261 + -1 VYICGRWSLC 10 88 628.8001338209651 1255.5857147087302 2 629.8143920898438 MULTI HCD FTMS 0 0 0 18906 20517.78515625 0.5737991687124043 1 -0.01941680908203125 4 Carbamidomethyl (C) _VYICGRWSLC(Carbamidomethyl (C))_ REV__ENST00000298125.6_1_13:52334171-52334492:+|nuORF 7.910154910731844 0.4334339971971892 2 [YV][EP]{I|L}ADYTW 10 -1 + 52.853 0 0 4.2095 4.2095 82.507 0 0 0 17.939455175668755 14.284211946488341 14.284211946488341 3.0102999566398125 0 0 1.6989700043360187 0 0 [YV][EP]{I|L}ADYTW;[YV]{I|L}[EP]ADYTW;[YV][EP]{I|L}WYTW;[YV]{I|L}[EP]WYTW;EM[HA]DA{I|L}W{[{M(Oxidation (M))|F}H]|[RQ]};[YV][EP]{I|L}A[YT]DW;EV[HC]DA{I|L}W{[{M(Oxidation (M))|F}H]|[RQ]};{[CT]|[{M(Oxidation (M))|F}G]}TYDA{I|L}W{[{M(Oxidation (M))|F}H]|[RQ]};EM{I|L}[SG]H{I|L}W{[{M(Oxidation (M))|F}H]|[RQ]};[YV]{I|L}[EP]A[YT]DW 4.2095;3.9697;3.929;3.6892;2.7355;2.7161;2.5952;2.5952;2.5535;2.4763 -;-;-;-;-;-;-;-;-;- 1216 NaN NaN 188942.7 NaN 15060 3848 18906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18911 78.714 NaN 394330 35 0 49809 0.262 + 27443 SYVQTLVYI 9 82 543.2973919082062 1084.5802308832124 2 543.2974243164062 MULTI HCD FTMS 0 0 0 18906 163491.96875 0.3961481933558626 3 -0.0749359130859375 5 Unmodified _SYVQTLVYI_ ENSG00000204267|ENST00000374897|TAP2;nc|ENSG00000204267|Q03519-2|TAP2 70.33199760932243 0.0089807860198535 2 [YV]SQT{I|L}VY{I|L} 9 2 + 91.322 0 0 8.4201 8.4201 92.662 0 0 0 16.020599913279625 16.478174818886373 16.020599913279625 9.208187539523749 0 2.1747425010840047 1.3010299956639813 1.274227503252014 0 [YV]SQT{I|L}VY{I|L};[YV]S[AG]T{I|L}VY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}VQT{I|L}VY{I|L};[YV]{I|L}TSQVY{I|L};[YV]S[{I|L}T]QVY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}V[AG]T{I|L}VY{I|L};[Y{I|L}][NS]T{I|L}VY{I|L};[YV]{I|L}TS[AG]VY{I|L};[YV]S[{I|L}T][AG]VY{I|L};[Y{I|L}]VTSQVY{I|L} 8.4201;7.5711;6.9429;6.492;6.4631;6.0939;6.0666;5.6429;5.6141;5.6121 -;-;+;-;-;-;-;-;-;- + 1079 NaN NaN 137918.8 NaN 15061 3848 18906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18913 78.719 NaN 1375600 35 0 245470 0.327 + 13809 KYPSPFFVF 9 71 566.2972883717671 1130.580023810334 2 566.2979125976562 MULTI HCD FTMS 0 0 0 18912 869102.5625 0.007818593217471798 54 -1.5214691162109375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 96.11092074494114 0.00436583732602279 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 80.34 0 0 7.1061 7.1061 88.745 0 0 0 7.0277122468424835 7.0277122468424835 7.0277122468424835 7.0277122468424835 0 2.7302046884880937 0 0.7302046884880937 0.6861818737241735 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};KYPS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F};KY[KG]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]KY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};K[WP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SK{[QN]|[E{I|L}]|[KN]} 7.1061;6.4845;5.9277;5.1532;4.5748;4.5383;4.3047;4.1998;3.7802;3.3785 +;+;-;-;-;-;-;-;-;- + 997 NaN NaN 296349.1 NaN 15062 3849 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18914 78.723 NaN 756770 35 0 75868 0.261 + 11238 IYLERFPIF 9 90 599.3368763672244 1196.6591998012486 2 599.3369750976562 MULTI HCD FTMS 0 0 0 18912 430231.03125 0.9558964986733643 -1 0.01941680908203125 2 Unmodified _IYLERFPIF_ ENSG00000011260|ENST00000225298|UTP18 59.368380827593164 0.01846506874148156 2 [Y{I|L}]{I|L}ER{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9 0 + 92.573 0 0 7.736 7.736 89.467 0 0 0 19.436974992327123 68.13608784304506 19.436974992327123 6.020599913279625 0 2.3494850021680094 1.6989700043360187 0.3494850021680094 0 + + [Y{I|L}]{I|L}ER{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}ER{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F};[Y{I|L}]E{I|L}R{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[Y{I|L}]E{I|L}R{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F};[Y{I|L}]{I|L}ER[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]E{I|L}R[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}[VG][KQ]P{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{I|L}R{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[Y{I|L}][QA][KA]{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Y{I|L}R{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F} 7.736;7.2328;6.8352;6.332;5.7512;4.8504;4.7526;4.4135;4.3976;3.9103 +;-;-;-;-;-;-;-;-;- + 696 NaN NaN 205259.7 NaN 15063 3849 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18915 78.727 NaN 170700 35 0 7504.3 0.262 + -1 MLILLWIT 8 70 509.8037904894488 1017.5930280456976 2 509.8038024902344 MULTI HCD FTMS 0 0 0 18912 142556.6875 0.3331687141091383 -2 0.05229949951171875 3 Oxidation (M) _M(Oxidation (M))LILLWIT_ REV__ENST00000257787.5_1_6:88385034-88385271:-|nuORF 5.230669730166228 0.5342319408533849 2 M 1 -1 11.594 0 0 1.1393 0 0 868.5418328326101 0 868.5418328326101 0 7.614393726401687 0 0 0 0 0 0 0 M 1.1393 + + 67 + NaN NaN 121138.4 NaN 15064 3849 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18916 78.73 NaN 349070 35 0 49540 0.261 + 22070 QHFQQYLL 8 54 538.779190031687 1075.543827130174 2 539.2677612304688 MULTI HCD FTMS 0 0 0 18912 40591.5859375 0.5835126210423668 -2 0.05229949951171875 4 Unmodified _QHFQQYLL_ ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;nc|ENSG00000141431|Q9C0F0-2|ASXL3 13.50788311687929 0.4944073034352369 2 Y{I|L}{I|L} 3 5 27.224 0 0 2.5311 0 0 668.3020852065441 0 668.3020852065441 0 20.233871898888154 0 0 0 0.8807196863200843 0 0 0 + Y{I|L}{I|L} 2.5311 + + 24 NaN NaN 140538.7 NaN 15065 3849 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18917 78.734 NaN 109880 35 0 15017 0.261 -1 PSLCLITAL 9 39 494.2808660091477 986.5471790850954 2 494.28125 MULTI HCD FTMS 0 0 0 18912 72211.484375 0.2666212253464492 6 -0.17679595947265625 5 Carbamidomethyl (C) _PSLC(Carbamidomethyl (C))LITAL_ ENSG00000277161|ENST00000614443|PIGW 25.399314129420986 0.14091189997036632 2 {I|L}TA{I|L} 4 -1 49.68 0 0 5.0358 0 0 570.2828236310562 0 570.2828236310562 0 44.195925227640984 0 0 0 1.3494850021680094 0 0.4247425010840047 0 {I|L}TA{I|L} 5.0358 + + 25 NaN NaN 109153.1 NaN 15066 3849 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18918 78.737 NaN 92355 35 0 7096.4 0.261 -1 0 53 485.38812255859375 NaN 0 485.38812255859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 G 1 -1 4.6041 0 0 0.47526 0 0 322.4271876935563 586.2839449518186 908.7111326453748 0 0 0 0 0 0 0 0 0 G 0.47526 - 8 + NaN NaN 109097.7 NaN 15067 3849 18912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18920 78.742 NaN 1652800 35 0 244670 0.327 + 22952 QYVVDLTSF 9 93 536.2716912255555 1070.528829517911 2 536.7874755859375 MULTI HCD FTMS 0 0 0 18919 37952.765625 0.16759449393400855 -5 0.14073944091796875 1 Unmodified _QYVVDLTSF_ ENSG00000135778|ENST00000366628|NTPCR;ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF 41.95555342248728 0.056367691549927025 2 E{I|L}V[{M(Oxidation (M))|F}V]TS{M(Oxidation (M))|F} 8 4 43.529 0 0 4.0661 0 0 130.06348091857473 0 130.06348091857473 0 25.15662222408956 0 0 0 1.1549471895720984 0 1.2416440611282626 0 E{I|L}V[{M(Oxidation (M))|F}V]TS{M(Oxidation (M))|F} 4.0661 - 1196 + NaN NaN 331947.9 NaN 15068 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18921 78.746 NaN 351600 35 0 27979 0.261 + -1 YKDKIKGVCI 10 69 612.3452685413611 NaN 0 612.3323364257812 PEAK HCD FTMS 0 0 0 18919 32722.15625 1 0 0 2 Carbamidomethyl (C) _YKDKIKGVC(Carbamidomethyl (C))I_ REV__tr|U7SFY3|U7SFY3_FUSNURibosomalRNAlargesubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmHPE=3SV=1 3.5964929083625545 0.337106189561315 2 {I|L}W{[ET]|[MV]}{I|L}H 6 -1 14.117 0 0 1.1546 0 0 165.1043330771834 275.13999353580317 440.2443266129866 0 0 0 0 0 0 0 0.7742275032520141 0 {I|L}W{[ET]|[MV]}{I|L}H 1.1546 - 68 + NaN NaN 135558.4 NaN 15069 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18922 78.75 NaN 338550 35 0 27382 0.261 + 19850 NYAWVYYHL 9 69 614.7929572147666 NaN 0 614.7923583984375 PEAK HCD FTMS 0 0 0 18919 151760.875 0.8649621223253061 -1 0.02276611328125 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 96.11092074494114 4.720459847005445E-05 2 HYYVWA 6 7 45.838 0 0 3.734 0 0 131.09407385500373 274.08309102068955 405.1771648756933 0 0 0 0 0 2.5994850021680094 0 0 0 HYYVWA 3.734 - 275 + NaN NaN 144918.8 NaN 15070 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18923 78.753 NaN 194080 35 0 68577 0.263 + 23772 RRLLASIY 8 35 496.30415354247714 NaN 0 496.3035583496094 PEAK HCD FTMS 0 0 0 18919 153408.046875 0.48185676899238444 -1 0.02276611328125 4 Unmodified _RRLLASIY_ REV__ENSG00000197380|ENST00000391916|DACT3 0.6903765706972694 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.46478 0 0 166.2268851105418 674.2789400690061 840.5058251795479 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46478 - 4 + NaN NaN 109773.4 NaN 15071 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18924 78.756 NaN 87616 35 0 18859 0.261 -1 0 37 437.70930771881217 873.4040625044244 2 437.7093200683594 MULTI HCD FTMS 0 0 0 18919 87723.8125 0.4856579992010548 -1 0.02276611328125 5 NaN NaN 2 H 1 -1 6.9897 0 0 0.80028 0 0 172.12107324862637 561.2150972955686 733.336170544195 0 0 0 0 0 0 0 0 0 H 0.80028 - 2 + NaN NaN 102359.6 NaN 15072 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18925 78.76 NaN 179410 35 0 13025 0.261 -1 YKRKSFCWQF 10 56 483.9065772667815 NaN 0 483.9073791503906 PEAK HCD FTMS 0 0 0 18919 56194.8359375 0.49547432407960196 -1 0.02276611328125 6 Carbamidomethyl (C) _YKRKSFC(Carbamidomethyl (C))WQF_ ENST00000441476.6_2_7:6029508-6029571:-|nuORF 5.783430956126388 0.3352344736943206 2 C 1 -1 6.9897 0 0 0.72372 0 0 99.36663511279967 760.3837262994582 859.7503614122579 0 0 0 0 0 0 0 0 0 C 0.72372 + + 5 + NaN NaN 115163.2 NaN 15073 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18926 78.763 NaN 165090 35 0 27426 0.261 -1 AEMLPGVLQQF 11 46 624.8184239177995 1247.6222949023988 2 624.81884765625 MULTI HCD FTMS 0 0 0 18919 98828.8359375 1 0 0 7 Oxidation (M) _AEM(Oxidation (M))LPGVLQQF_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 24.881564428377168 0.24028852512227317 2 {I|L}[RP]{I|L}QQ{M(Oxidation (M))|F} 7 -1 50.534 0 0 4.0504 0 0 347.1151600568375 0 347.1151600568375 0 44.591379162015556 0 0 0 1.8807196863200843 0 0 0 {I|L}[RP]{I|L}QQ{M(Oxidation (M))|F} 4.0504 - 48 NaN NaN 113475.3 NaN 15074 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18927 78.766 NaN 180290 35 0 43966 0.264 + 687 APVLPEPIL 9 44 474.79208567077677 947.5696184083536 2 474.7921142578125 MULTI HCD FTMS 0 0 0 18919 95932.203125 1 0 0 8 Unmodified _APVLPEPIL_ ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2 15.847184025352803 0.2234401846867398 2 P{I|L}{I|L} 3 6 25.49 0 0 2.69 0 0 606.3388539044937 0 606.3388539044937 0 20.885540741363187 0 0 0 0.3807196863200844 0 0 0 + P{I|L}{I|L} 2.69 + + 7 NaN NaN 130964.7 NaN 15075 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18928 78.77 NaN 170460 35 0 28707 0.261 + 24265 RYFLPPYTF 9 49 602.3135811492392 1202.6126093652783 2 602.31298828125 MULTI HCD FTMS 0 0 0 18919 99051.7890625 1 0 0 9 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 22.736283301280096 0.1639198954644489 2 {I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 6 3 31.643 0 0 2.6312 0 0 466.2291432111344 0 466.2291432111344 0 19.653500133247732 0 0 0 0.9247425010840047 0 0 0 + {I|L}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 2.6312 + + 56 NaN NaN 123461.1 NaN 15076 3850 18919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18930 78.774 NaN 1188800 35 0 122440 0.327 + 6414 FPHLTVVLL 9 83 519.820981901874 1037.627410870548 2 519.8211059570312 MULTI HCD FTMS 0 0 0 18929 963110.4375 0.0844358950362121 11 -0.30799102783203125 1 Unmodified _FPHLTVVLL_ ENSG00000134825|ENST00000537328|TMEM258 70.71552829651908 0.008856681705782516 2 {I|L}C{I|L}TVV{I|L}{I|L} 8 3 60.626 0 0 5.8427 0 0 165.0787068097672 0 165.0787068097672 0 43.71465701444528 0 0 0 2.124803706770636 0 1.110924374808178 0 {I|L}C{I|L}TVV{I|L}{I|L} 5.8427 - 485 NaN NaN 276218.3 NaN 15077 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18931 78.779 NaN 403220 35 0 50646 0.261 + 22071 QHFQQYLL 8 58 538.779190031687 1075.543827130174 2 539.2680053710938 MULTI HCD FTMS 0 0 0 18929 69564.1953125 1 0 0 2 Unmodified _QHFQQYLL_ ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;nc|ENSG00000141431|Q9C0F0-2|ASXL3 13.50788311687929 0.4944073034352369 2 Y{I|L}{I|L} 3 5 26.911 0 0 2.5021 0 0 668.3013172834 0 668.3013172834 0 13.812281309285623 0 0 0 0.8494850021680094 0 0 0 + Y{I|L}{I|L} 2.5021 + + 39 NaN NaN 156588.6 NaN 15078 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18932 78.782 NaN 315020 35 0 22707 0.261 + 19851 NYAWVYYHL 9 72 614.7929572147666 NaN 0 614.7940063476562 PEAK HCD FTMS 0 0 0 18929 175453.78125 1 0 0 3 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 60.07390631473393 0.025248448234918747 2 {M(Oxidation (M))|F}AWVY 5 5 43.984 0 0 3.583 0 0 130.0772951894956 428.1938875787719 558.2711827682675 0 0 0 0 0 2.142159058960253 0 0 0 {M(Oxidation (M))|F}AWVY 3.583 - 216 + NaN NaN 143258.1 NaN 15079 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18933 78.786 NaN 238330 35 0 18298 0.261 -1 LTCMTIGFLFP 11 63 629.8142267839339 1257.6139006346677 2 630.3170166015625 MULTI HCD FTMS 0 0 0 18929 108878.8984375 0.49576180807135073 6 -0.1736297607421875 4 Oxidation (M) _LTCM(Oxidation (M))TIGFLFP_ ENSG00000072315|ENST00000262839|TRPC5 18.1463463914782 0.2989727007011538 2 [YV]{I|L}M{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NYV{I|L} 10 -1 + 61.916 0 0 4.9233 4.9233 86.06 0 0 0 20.58037176564042 41.47099695308839 20.58037176564042 9.164539485499255 0 1.7302046884880937 1.6989700043360187 0 0 [YV]{I|L}M{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NYV{I|L};[YV]{I|L}M{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}GGYV{I|L};[YV]{I|L}{[CA]|SS}[W{M(Oxidation (M))|F}]{I|L}M{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YN][{I|L}T]M{I|L}M{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YN]{[NV]|[RG]}NYV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}V]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}NYV{I|L} 4.9233;4.1946;3.8082;2.5566;0.98351;0.96982 -;-;-;-;-;- 457 NaN NaN 124051.8 NaN 15080 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18934 78.789 NaN 164630 35 0 33924 0.262 + 5065 FDSLLWAIV 9 41 532.2947938337325 1062.5750347342648 2 532.2945556640625 MULTI HCD FTMS 0 0 0 18929 57290.10546875 0.35271114642166557 5 -0.1441192626953125 5 Unmodified _FDSLLWAIV_ ENSG00000006283|ENST00000359106|CACNA1G;ENSG00000100346|ENST00000402142|CACNA1I;ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;nc|ENSG00000196557|O95180-2|CACNA1H 12.531546534597751 0.2520865569484384 2 AV{I|L} 3 8 36.198 0 0 3.4066 0 0 761.3743153914633 0 761.3743153914633 0 22.21848749616356 0 0 0 1 0 0 0 AV{I|L} 3.4066 - 37 NaN NaN 111250.9 NaN 15081 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18935 78.792 NaN 137910 35 0 36125 0.261 + 688 APVLPEPIL 9 40 474.79208567077677 947.5696184083536 2 474.7922058105469 MULTI HCD FTMS 0 0 0 18929 68386.625 0.7128641141587458 1 -0.02933502197265625 6 Unmodified _APVLPEPIL_ ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2 11.640296217721598 0.25978676193971967 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 128401.3 NaN 15082 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18936 78.796 NaN 164990 35 0 18957 0.261 + 35206 YVLICPVFFL 10 57 607.3404553427808 NaN 0 607.7549438476562 PEAK HCD FTMS 0 0 0 18929 28454.49609375 1 0 0 7 Unmodified _YVLICPVFFL_ REV__ENSG00000176540|ENST00000319813|OR4C5 7.910154910731844 0.33341429274560913 2 {M(Oxidation (M))|F} 1 -1 8.9794 0 0 0.74047 0 0 131.09767828848732 931.4809054010374 1062.5785836895247 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.74047 + + 14 + NaN NaN 117852 NaN 15083 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18937 78.799 NaN 149580 35 0 20385 0.261 + 7393 FVIPGLQWF 9 56 553.8052492750654 1105.5959456169307 2 553.8050537109375 MULTI HCD FTMS 0 0 0 18929 66503.84375 0.1964491287550839 8 -0.229339599609375 8 Unmodified _FVIPGLQWF_ ENSG00000169247|ENST00000515425|SH3TC2;nc|ENSG00000169247|Q8TF17-5|SH3TC2 7.910154910731844 0.2910521888787154 2 T 1 9 3.9794 0 0 0.35993 0 0 618.8220636362652 382.70441614322505 1001.5264797794903 0 0 0 0 0 0 0 0 0 T 0.35993 - 7 + NaN NaN 128605.8 NaN 15084 3851 18929 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18939 78.804 NaN 1189400 35 0 392080 0.327 + 4913 FAIPLIEKL 9 64 522.3284730449058 1042.6423931566114 2 522.3287353515625 MULTI HCD FTMS 0 0 0 18938 584380.625 0.15367993330848181 7 -0.20000457763671875 1 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 67.83816525789305 0.009787749748478139 2 {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L} 9 0 + 74.351 0 0 7.131 7.131 93.139 0 0 0 60.85647216221645 5.3744678127529255 5.3744678127529255 17.774334638038454 0 2.6549471895720984 0 0.6989700043360187 0 + + {M(Oxidation (M))|F}A{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}E{I|L}K{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}{[VA]|[{I|L}G]}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{I|L}{I|L}[K{I|L}]E;{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}[{I|L}P]{I|L}A{M(Oxidation (M))|F}{I|L} 7.131;5.4263;4.2764;4.0171;3.5815;0.87896 +;+;-;-;-;- + 103 + NaN NaN 278906.6 NaN 15085 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18940 78.808 NaN 819790 35 0 46765 0.261 + 30902 VQVAGKAER 9 92 479.2775341566531 956.5405153801062 2 479.2773742675781 MULTI HCD FTMS 0 0 0 18938 872416.5 0.8715162237408757 1 -0.03946685791015625 2 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 2 Q 1 8 10.485 0 0 1.0961 0 0 458.27328225648967 367.1971061523464 825.470388408836 0 0 0 0 0 0.5 0 0 0 + Q 1.0961 + + 41 + NaN NaN 207162.9 NaN 15086 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18941 78.812 NaN 334860 35 0 19708 0.261 + 30465 VLSARSSRV 9 74 487.79076122415506 973.5669695151101 2 487.790771484375 MULTI HCD FTMS 0 0 0 18938 361920.46875 0.4068455208422766 1 -0.03946685791015625 3 Unmodified _VLSARSSRV_ ENST00000274793.11_1_6:46690657-46703025:-|nuORF 3.2813086475875832 0.32614229037259 2 QK 2 9 5.5732 0 0 0.57245 0 0 475.30008898069417 239.09250818424064 714.3925971649348 0 0 0 0 0 0 0 0 0 QK 0.57245 - 29 + NaN NaN 142190.5 NaN 15087 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18942 78.815 NaN 585920 35 0 90541 0.261 + 18185 MPDLDLNL 8 59 465.73369609038144 929.4528392475629 2 465.7336120605469 MULTI HCD FTMS 0 0 0 18938 334058.3125 0.62658324154272 1 -0.03946685791015625 4 Unmodified _MPDLDLNL_ ENSG00000124942|ENST00000378024|AHNAK 54.773552608820026 0.09821516306421259 2 {NN|[MP]|[D{I|L}]|[EV]}PMD{I|L}N{I|L} 8 2 + 60.277 0 0 6.4852 6.4852 90.118 0 0 0 19.615005783267996 35.839868525585466 19.615005783267996 9.262137858390815 0 0.9826446478103829 1.3010299956639813 0.3807196863200844 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}PMD{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}PMD{I|L}GG{I|L} 6.4852;5.4887 -;- 91 NaN NaN 173511.1 NaN 15088 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18943 78.819 NaN 435790 35 0 22752 0.261 -1 0 80 501.29047871913184 500.28320225253185 1 501.2904357910156 MULTI HCD FTMS 0 0 0 18938 364057.375 0.7720340288231862 1 -0.03946685791015625 5 NaN NaN 2 V 1 -1 3.8515 0 0 0.76987 0 0 174.08990185101896 224.09711633853752 398.1870181895565 0 0 0 0 0 0.2742275032520141 0 0 0 V 0.76987 - 14 + NaN NaN 153142.9 NaN 15089 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18944 78.822 NaN 1285000 35 0 172780 0.261 + 4918 FAIPLIERL 9 89 536.3316311248942 1070.6487093165883 2 536.3319091796875 MULTI HCD FTMS 0 0 0 18938 237186.890625 0.5257806355810594 1 -0.03946685791015625 6 Unmodified _FAIPLIERL_ DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF 34.93206674587334 0.08860942999206235 2 ST{I|L}DPVQ{M(Oxidation (M))|F} 8 8 44.045 0 0 4.1138 0 0 165.20233389317497 0 165.20233389317497 0 2.6373497057826825 0 0 0 0 0 0.9947026752325154 0.5484550065040282 ST{I|L}DPVQ{M(Oxidation (M))|F} 4.1138 - 1182 + NaN NaN 283845.5 NaN 15090 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18945 78.825 NaN 212860 35 0 13312 0.261 + 30566 VNLLCATVF 9 70 490.2685703787751 978.5225878243502 2 490.2686767578125 MULTI HCD FTMS 0 0 0 18938 65352.37109375 0.2732543964014099 1 -0.03946685791015625 7 Unmodified _VNLLCATVF_ REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense 10.823927491677226 0.26684000660059787 2 {[ET]|[MV]}{I|L}QY 5 -1 10.7 0 0 1.0935 0 0 0 341.19227602775044 341.19227602775044 3.710149894766701 0 0 0 0 0 0 0.3252574989159953 0 {[ET]|[MV]}{I|L}QY 1.0935 - 250 NaN NaN 110186.8 NaN 15091 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18946 78.829 NaN 372800 35 0 28195 0.261 + 26647 SYADNILSF 9 81 515.247897943828 1028.4812429544559 2 515.247802734375 MULTI HCD FTMS 0 0 0 18938 144313.5625 0.6490140273413065 -3 0.0848541259765625 8 Unmodified _SYADNILSF_ ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion 133.0521902211835 0.0004198702180815479 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDN{I|L}{I|L}S{M(Oxidation (M))|F} 9 2 + 97.634 0 0 9.4931 9.4931 91.571 0 0 0 5.941672674783476 16.478174818886373 5.941672674783476 5.941672674783476 0 2.4247425010840047 1.154901959985743 1.0044321917401078 1.274227503252014 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDN{I|L}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}ADN{I|L}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}SDGG{I|L}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}ADGG{I|L}{I|L}S{M(Oxidation (M))|F};EE[YE]KKG{M(Oxidation (M))|F} 9.4931;8.9153;7.3588;6.7811;1.6194 -;+;-;-;- + 599 NaN NaN 150998.7 NaN 15092 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18947 78.832 NaN 226630 35 0 13226 0.261 -1 YKRKSFCWQF 10 65 483.9065772667815 NaN 0 483.906005859375 PEAK HCD FTMS 0 0 0 18938 55932.71484375 0.49316318161275263 1 -0.03946685791015625 9 Carbamidomethyl (C) _YKRKSFC(Carbamidomethyl (C))WQF_ ENST00000441476.6_2_7:6029508-6029571:-|nuORF 8.444304893310646 0.3329571343918231 2 YPW 3 -1 12.307 0 0 1.2743 0 0 128.3929698819955 388.18808923892817 516.5810591209237 0 0 0 0 0 0 0 0 0 YPW 1.2743 - 32 + NaN NaN 123013.6 NaN 15093 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18948 78.835 NaN 133540 35 0 27057 0.261 + 17794 MFEQPVTT 8 42 476.724706070023 NaN 0 476.72503662109375 PEAK HCD FTMS 0 0 0 18938 16695.15234375 0.18113692183964322 1 -0.03946685791015625 10 Unmodified _MFEQPVTT_ REV__ENSG00000196502|ENST00000314752|SULT1A1;REV__nc|ENSG00000289755|P50225-2|SULT1A1 3.944395688203298 0.38822285293237185 2 P 1 -1 6.9897 0 0 0.73465 0 0 131.04181545674209 720.3183402653385 851.3601557220807 0 0 0 0 0 0 0 0 0 P 0.73465 + + 1 + NaN NaN 109199.2 NaN 15094 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18949 78.839 NaN 145230 35 0 9900.3 0.261 -1 MKAVTLPTF 9 69 512.2813395281884 1022.5481261231768 2 512.2825317382812 MULTI HCD FTMS 0 0 0 18938 37017.8828125 0.4170174457206305 1 -0.03946685791015625 11 Oxidation (M) _M(Oxidation (M))KAVTLPTF_ ENST00000425350.1_1_13:49151308-49151716:-|nuORF 4.3292370932331545 0.3181982124262546 2 AK 2 -1 7.9588 0 0 0.77833 0 0 475.26194555852663 345.15326868228755 820.4152142408142 0 0 0 0 0 0 0 0 0 AK 0.77833 - 66 + NaN NaN 112779.5 NaN 15095 3852 18938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18951 78.843 NaN 1978200 35 0 166390 0.327 + 24455 RYLDLFTSF 9 88 581.3004618451429 1160.5863707570857 2 581.3005981445312 MULTI HCD FTMS 0 0 0 18950 947173.375 0.1564875253781014 8 -0.21964263916015625 1 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 100.0907132914201 0.004261551473353346 2 [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 92.885 0 0 8.0033 8.0033 89.327 0 0 0 4.137342758552691 7.034021960761265 4.137342758552691 4.508272069161734 0 3.1747425010840047 0 1.555462187404089 0 + + [YR]{I|L}D{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVD{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}[KQ]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ]{I|L}[KQ]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 8.0033;7.6149;6.6653;6.1048;5.3926;4.8321 +;-;-;-;-;- + 1225 + NaN NaN 388401.2 NaN 15096 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18952 78.848 NaN 1603500 35 0 625390 0.264 + 8739 HHGAGAFF 8 44 422.1985239190314 842.3824949048628 2 422.1988220214844 MULTI HCD FTMS 0 0 0 18950 586068.9375 0.47267812339419996 2 -0.0524749755859375 2 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 13.979 0 0 1.6595 0 0 677.3037575775176 0 677.3037575775176 0 10.880456295278407 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.6595 + + 2 + NaN NaN 329116.8 NaN 15097 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18953 78.851 NaN 712590 35 0 51269 0.261 + 15546 LPDPRELIEI 10 79 597.8400347815957 1193.6655166299913 2 597.840087890625 MULTI HCD FTMS 0 0 0 18950 246470.59375 0.4504479544892768 3 -0.0753173828125 3 Unmodified _LPDPRELIEI_ ENSG00000107862|ENST00000369983|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-3|GBF1 39.212999716063884 0.15223626971197562 2 {I|L}{M(Oxidation (M))|F}{I|L}PD{I|L}{[VA]|[{I|L}G]}D 9 6 46.623 0 0 3.9058 0 0 0 207.11312280826408 207.11312280826408 33.71523434085148 0 0 0 0 1.555462187404089 0 0.5 0 {I|L}{M(Oxidation (M))|F}{I|L}PD{I|L}{[VA]|[{I|L}G]}D 3.9058 - 1369 + NaN NaN 198703.8 NaN 15098 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18954 78.855 NaN 1674800 35 0 201460 0.261 + 22953 QYVVDLTSF 9 96 536.2716912255555 1070.528829517911 2 536.2718505859375 MULTI HCD FTMS 0 0 0 18950 297244.96875 0.6799045630002426 -2 0.0688018798828125 4 Unmodified _QYVVDLTSF_ ENSG00000135778|ENST00000366628|NTPCR;ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF 142.0795815696625 1.719916958814042E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVVD{I|L}TS{M(Oxidation (M))|F} 10 2 + 73.706 0 0 6.885 6.885 85.536 0 0 0 0.17342849135354754 2.8740155168893864 0.17342849135354754 0.17342849135354754 0 2.579689690656103 1.0969100130080565 1.0387254899964358 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GVVD{I|L}TS{M(Oxidation (M))|F};[YQ]VVD{I|L}TS{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}[TA]VD{I|L}TS{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[SA]|[TG]}D{I|L}TS{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[{M(Oxidation (M))|F}C]|[YS]}VPK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T[{M(Oxidation (M))|F}V]VPK{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]VPK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{NN|[MP]|[D{I|L}]|[EV]}V[VG]S{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}P{[{M(Oxidation (M))|F}C]|[YS]}VK{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{NN|[MP]|[D{I|L}]|[EV]}VDK{M(Oxidation (M))|F} 6.885;6.8688;6.125;5.9766;4.4651;4.439;3.6955;2.6316;2.5142;2.2991 -;+;-;-;-;-;-;-;-;- + 1491 NaN NaN 340796.6 NaN 15099 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18955 78.858 NaN 315560 35 0 22398 0.261 + -1 IMKQFSADHF 10 64 620.2952425978831 1238.575932262566 2 620.2953491210938 MULTI HCD FTMS 0 0 0 18950 128070.1015625 0.2653935472398378 4 -0.104827880859375 5 Oxidation (M) _IM(Oxidation (M))KQFSADHF_ REV__ENST00000474323.5_1_22:44371844-44392260:+|nuORF 10.150570793230772 0.4161670024087991 2 YDA{I|L}WH{M(Oxidation (M))|F} 7 -1 62.243 0 0 5.0254 0 0 288.1468678205094 0 288.1468678205094 0 43.65942308353809 0 0 0 2.2302046884880937 0 0 0 YDA{I|L}WH{M(Oxidation (M))|F} 5.0254 - 392 NaN NaN 140345.9 NaN 15100 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18956 78.861 NaN 568890 35 0 180420 0.261 + 30026 VFPFRTFYL 9 65 595.3239836548272 1188.6334143764543 2 595.3244018554688 MULTI HCD FTMS 0 0 0 18950 214357.640625 0.71273176048611 2 -0.0524749755859375 6 Unmodified _VFPFRTFYL_ ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 32.037481411007896 0.10189719824197178 2 V{M(Oxidation (M))|F}P{M(Oxidation (M))|F}RTY{M(Oxidation (M))|F}{I|L} 9 2 + 30.811 0 0 2.5921 2.5921 81.816 0 0 0 14.128487329057155 0.7737809253782792 0.7737809253782792 4.462724883926658 0 1.4489700043360187 0 0 0 V{M(Oxidation (M))|F}P{M(Oxidation (M))|F}RTY{M(Oxidation (M))|F}{I|L};V{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[HV][PA]Y{I|L};V{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[HV][PS]{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[VP]RTY{M(Oxidation (M))|F}{I|L} 2.5921;2.2167;1.8845;0.1336 -;-;-;- 123 + NaN NaN 170682.1 NaN 15101 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18957 78.865 NaN 996770 35 0 294730 0.261 + 7058 FQLFAKPIL 9 89 538.8287430035074 1075.6429330738147 2 538.8291015625 MULTI HCD FTMS 0 0 0 18950 289786.8125 0.2661521979048286 -4 0.12432098388671875 7 Unmodified _FQLFAKPIL_ REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|27|3|anti-sense 16.942295170755138 0.21397866736869717 2 {I|L}{I|L} 2 -1 19.821 0 0 1.8427 0 0 831.4633362566681 0 831.4633362566681 0 1.404243831634986 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 1.8427 + + 154 NaN NaN 257011 NaN 15102 3853 18950 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18959 78.87 NaN 6398700 35 0 954290 0.327 + 20191 NYLDRFLSL 9 104 570.8059667679497 1139.5973806026993 2 570.8063354492188 MULTI HCD FTMS 0 0 0 18958 4529285.5 0.16497070306453193 4 -0.1048126220703125 1 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 184.3555567057281 7.78523872066095E-13 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 121.06 0 0 10.623 10.623 92.341 0 0 0 6.038923742439394 6.038923742439394 6.038923742439394 6.038923742439394 0 2.8494850021680094 1.6989700043360187 0.5387254899964358 2.159379381312206 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YN]{I|L}DRS{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]NDR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}D{I|L}[R{M(Oxidation (M))|F}]S{I|L};{I|L}YNDR{M(Oxidation (M))|F}{I|L}S{I|L};[Y{I|L}]GGDR{M(Oxidation (M))|F}{I|L}S{I|L};[Y{I|L}]NDR{M(Oxidation (M))|F}S{I|L}{I|L} 10.623;10.093;9.2581;8.3473;7.7757;7.4663;7.1341;7.0111;6.661;6.4107 +;+;-;-;-;-;-;-;-;- + 3464 NaN NaN 559917.4 NaN 15103 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18960 78.874 NaN 4716100 35 0 1824400 0.263 -1 CGRGAPHA 8 72 413.19305416906394 824.3715554049279 2 413.19354248046875 MULTI HCD FTMS 0 0 0 18958 3258054.25 0.7891106123074259 3 -0.07860565185546875 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 13.539 0 0 1.6424 0 0 155.094047256323 553.1712740533811 708.2653213097042 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.6424 - 17 + NaN NaN 800357.8 NaN 15104 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18961 78.878 NaN 1012900 35 0 134180 0.261 + 13573 KYPENFFLL 9 84 585.8131605635726 1169.6117681939452 2 585.8134155273438 MULTI HCD FTMS 0 0 0 18958 672249.5 0.003417229371702276 129 -3.5752334594726562 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 103.41943736471063 0.004016698775839292 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 91.375 0 0 7.8124 7.8124 90.602 0 0 0 8.455364353722018 16.478174818886373 8.455364353722018 8.455364353722018 0 2.6549471895720984 0 0.28872548999643577 1.73239816956497 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 7.8124;7.0895;7.0251;6.7749;6.3022;6.3022;6.1954;6.052;5.9876;5.6892 +;-;-;-;-;-;-;-;-;- + 1540 NaN NaN 255436.8 NaN 15105 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18962 78.881 NaN 1492200 35 0 225890 0.261 + 13810 KYPSPFFVF 9 93 566.2972883717671 1130.580023810334 2 566.2978515625 MULTI HCD FTMS 0 0 0 18958 687086.4375 0.006181145461821556 59 -1.6213607788085938 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 88.95385435242217 0.004553379958619559 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 73.681 0 0 6.5171 6.5171 90.765 0 0 0 11.677353201839438 16.478174818886373 11.677353201839438 11.677353201839438 0 2.5669015600442577 0 0.9049471895720984 0.6109243748081782 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK]V{M(Oxidation (M))|F}NSKV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[CT]|[{M(Oxidation (M))|F}G]}SAK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[YQ]AK{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[C(Carbamidomethyl (C))K]KV{M(Oxidation (M))|F} 6.5171;5.4842;5.2943;4.836;4.2478;4.0987;4.0088;4.0087;3.911;3.6008 +;-;-;-;-;-;-;-;-;- + 3791 NaN NaN 319401.7 NaN 15106 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18963 78.884 NaN 316440 35 0 76382 0.261 + 20099 NYIPRFWTF 9 60 622.3162503270299 1242.6179477208598 2 622.3168334960938 MULTI HCD FTMS 0 0 0 18958 150798.8125 0.0116046049482025 42 -1.1655044555664062 5 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 45.69961567697781 0.039180348357221985 2 [YN]{I|L}QW 5 5 47.703 0 0 3.8389 0 0 0 535.2408648842976 535.2408648842976 18.762874945799766 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}QW 3.8389 - 169 + NaN NaN 140597 NaN 15107 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18964 78.888 NaN 300650 35 0 22873 0.262 + 15285 LPAFIMITL 9 74 509.8037904894488 1017.5930280456976 2 509.803955078125 MULTI HCD FTMS 0 0 0 18958 139282.828125 0.3255173893114651 3 -0.07860565185546875 6 Unmodified _LPAFIMITL_ tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.2872 0 0 852.5141991656179 0 852.5141991656179 0 8.032687063272128 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2872 + + 78 + NaN NaN 145686.7 NaN 15108 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18965 78.891 NaN 623570 35 0 112870 0.261 + 17466 LYSNIAFNL 9 72 527.782301362313 1053.5500497914259 2 527.7822265625 MULTI HCD FTMS 0 0 0 18958 149786.109375 0.37718726893799537 -3 0.09502410888671875 7 Unmodified _LYSNIAFNL_ ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 121.5340881639634 0.001118397630175091 2 [Y{I|L}][NS]{I|L}A{M(Oxidation (M))|F}N{I|L} 9 0 + 86.761 0 0 8.2352 8.2352 88.668 0 0 0 1.9983513736339518 9.973024840566467 1.9983513736339518 1.9983513736339518 0 2.2614393726401687 1.6989700043360187 0.3494850021680094 1.6549471895720984 + + [Y{I|L}][NS]{I|L}A{M(Oxidation (M))|F}N{I|L};{I|L}Y[NS]{I|L}A{M(Oxidation (M))|F}N{I|L};{I|L}Y{[QS]|[NT]}VA{M(Oxidation (M))|F}N{I|L};[Y{I|L}][NS]{I|L}A{M(Oxidation (M))|F}GG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[KS]A{M(Oxidation (M))|F}N{I|L};[{M(Oxidation (M))|F}V]E[KS]A{M(Oxidation (M))|F}N{I|L};{I|L}Y[NS]{I|L}A{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[KS]A{M(Oxidation (M))|F}GG{I|L};{I|L}Y{[QS]|[NT]}VA{[VA]|[{I|L}G]}{[CT]|[{M(Oxidation (M))|F}G]};[{M(Oxidation (M))|F}V]E[KS]A{M(Oxidation (M))|F}GG{I|L} 8.2352;8.0455;7.451;7.3611;5.87;5.4754;5.3229;4.996;4.7284;4.6014 +;+;-;-;-;-;-;-;-;- + 757 NaN NaN 183571.2 NaN 15109 3854 18958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18967 78.896 NaN 621600 35 0 109990 0.327 + 16936 LYGVFTIHF 9 80 548.7950383560909 1095.5755237789817 2 548.7952880859375 MULTI HCD FTMS 0 0 0 18966 242229.828125 0.7230427504777078 -2 0.0524749755859375 1 Unmodified _LYGVFTIHF_ ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1 123.09622228370866 0.0010236603636890153 2 {I|L}YGV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F} 9 0 + 94.606 0 0 8.6353 8.6353 93.864 0 0 0 69.54419085293083 8.256886463274284 8.256886463274284 9.916440611282624 0 2.524227503252014 2 0.7302046884880937 0 + + {I|L}YGV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};[Y{I|L}]GV{M(Oxidation (M))|F}{I|L}TH{M(Oxidation (M))|F};{I|L}YR[KC]VV{[ES]|[DT]|[{I|L}C]};[Y{I|L}]K{M(Oxidation (M))|F}E{I|L}H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{M(Oxidation (M))|F}{I|L}TH{M(Oxidation (M))|F};{I|L}YR[TA]{[SA]|[TG]}V{[ES]|[DT]|[{I|L}C]};[Y{I|L}]K{M(Oxidation (M))|F}[NP][PA]{M(Oxidation (M))|F};[Y{I|L}]K{M(Oxidation (M))|F}[PA][NP]{M(Oxidation (M))|F};{I|L}[Q{I|L}][HD]GVV{[ES]|[DT]|[{I|L}C]};{I|L}[Q{I|L}]G[HD]VV{[ES]|[DT]|[{I|L}C]} 8.6353;7.7301;5.8109;5.3791;5.085;4.8615;4.4143;3.2477;1.8368;1.8256 +;-;-;-;-;-;-;-;-;- + 946 + NaN NaN 178292.4 NaN 15110 3855 18966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18968 78.9 NaN 295280 35 0 37735 0.261 + 10038 IFDLQSNTVL 10 69 575.3111075855049 1148.6076622378098 2 575.8128051757812 MULTI HCD FTMS 0 0 0 18966 57909.765625 0.6169649398412469 1 -0.0228424072265625 2 Unmodified _IFDLQSNTVL_ ENSG00000123352|ENST00000552918|SPATS2 35.61225514009592 0.18348312004207498 2 QSNTV{I|L} 6 4 43.769 0 0 3.8106 0 0 488.2611561505875 0 488.2611561505875 0 34.3052786053779 0 0 0 1.524227503252014 0 0.4247425010840047 0.6109243748081782 + QSNTV{I|L} 3.8106 + + 117 NaN NaN 130254.9 NaN 15111 3855 18966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18969 78.904 NaN 215130 35 0 30883 0.261 + 32277 VYTVVDEMFL 10 58 616.2994505061508 1230.5843480791016 2 616.29931640625 MULTI HCD FTMS 0 0 0 18966 122910.25 0.032916490610041815 -35 1.0031890869140625 3 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 85.64151623876279 0.0013369395341731622 2 DVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 3 73.639 0 0 5.9841 0 0 248.1529255597672 0 248.1529255597672 0 66.19193498491995 0 0 0 2.25 0 0.805462187404089 0 DVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.9841 - 446 NaN NaN 118870 NaN 15112 3855 18966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18970 78.907 NaN 94251 35 0 17402 0.264 + 34918 YSKFGAMA 8 35 437.70930771881217 873.4040625044244 2 437.7093200683594 MULTI HCD FTMS 0 0 0 18966 88056.296875 0.4874987046118931 4 -0.108062744140625 4 Unmodified _YSKFGAMA_ ENST00000443260.1_1_X:144712299-144712695:+|nuORF 2.577480529830294 0.5381683276125971 2 H 1 8 6.9897 0 0 0.80028 0 0 172.1218479349081 561.2175387018186 733.3393866367267 0 0 0 0 0 0 0 0 0 H 0.80028 - 12 + NaN NaN 118173.4 NaN 15113 3855 18966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18971 78.911 NaN 235810 35 0 48289 0.261 + 6072 FPEDVVRVIF 10 64 610.8368822329892 1219.6592115327783 2 610.83740234375 MULTI HCD FTMS 0 0 0 18966 32435.6484375 0.42236417805497517 -5 0.15402984619140625 5 Unmodified _FPEDVVRVIF_ ENSG00000146192|ENST00000274963|FGD2;ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF 24.881564428377168 0.27837825820855233 2 {M(Oxidation (M))|F}PEDVV[RV]{I|L}{M(Oxidation (M))|F} 10 0 + 43.128 0 0 3.536 3.536 89.505 0 0 0 31.89055965521284 4.788559305164171 4.788559305164171 43.127684709413074 0 1.555462187404089 0 0.5 0 + + {M(Oxidation (M))|F}PEDVV[RV]{I|L}{M(Oxidation (M))|F} 3.536 + + 48 + NaN NaN 126578.1 NaN 15114 3855 18966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18972 78.914 NaN 222330 35 0 13659 0.261 + 11400 IYPLHELALW 10 66 627.8476864570208 NaN 0 627.8475952148438 PEAK HCD FTMS 0 0 0 18966 58756.3125 0.44952743723489996 4 -0.108062744140625 6 Unmodified _IYPLHELALW_ ENSG00000113838|ENST00000338733|TBCCD1;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant 25.399314129420986 0.2368981700431367 2 {I|L}A 2 8 14.253 0 0 1.1369 0 0 204.08971139942406 862.4457491510374 1066.5354605504615 0 0 0 0 0 0.805462187404089 0 0 0 + {I|L}A 1.1369 + + 46 + NaN NaN 129395.1 NaN 15115 3855 18966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18974 78.919 NaN 1932800 35 0 341590 0.327 + 26917 SYLDSIHFF 9 97 564.7719541382584 1127.5293553433166 2 564.772216796875 MULTI HCD FTMS 0 0 0 18973 1082593.25 1 0 0 1 Unmodified _SYLDSIHFF_ CREBBP|p.I1431V|1|0.34|ENSG00000005339|chr16:3738662-3738662|T/C|missense_variant;ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP 133.70201269244603 0.0003804610509361063 2 SY{I|L}D{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 101.88 0 0 9.0354 9.0354 97.14 0 0 0 73.03273116069214 14.09256854528806 14.09256854528806 31.00833760139686 0 2.6989700043360187 2 0.805462187404089 0 + + SY{I|L}D{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}D{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}YD{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};SY{[QD]|[EN]|[WG]|[KD]|[RS]}RD{I|L}[MT];SYAATRD{I|L}[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E[VS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};S[QP]H{[TV]|[{I|L}S]}D{I|L}[MT];{[TV]|[{I|L}S]}YE[VS]H{M(Oxidation (M))|F}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YS{[TV]|[{I|L}S]}H{M(Oxidation (M))|F}{M(Oxidation (M))|F};SY{[QD]|[EN]|[WG]|[KD]|[RS]}[VG]D{I|L}[MT] 9.0354;6.2853;6.0721;5.3984;5.2282;5.076;4.864;4.8629;4.6676;4.5817 +;+;-;-;-;-;-;-;-;- + 3146 + NaN NaN 405613.8 NaN 15116 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18975 78.923 NaN 1009300 35 0 115430 0.261 + 7907 FYVRGLFSF 9 89 568.3002155937813 1134.5858782543626 2 568.3008422851562 MULTI HCD FTMS 0 0 0 18973 660697 0.6793301776090955 -1 0.0228424072265625 2 Unmodified _FYVRGLFSF_ ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2 96.11092074494114 0.00436583732602279 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 10 5 + 72.221 0 0 6.3654 6.3654 85.591 0 0 0 12.550179335456306 12.385606273598313 12.385606273598313 2.4444369393283836 0 1.5 1.3979400086720375 0.6109243748081782 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RVV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}A{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[Q{I|L}]{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{M(Oxidation (M))|F}A{I|L}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{M(Oxidation (M))|F}A{I|L}S{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RVVAY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GV{M(Oxidation (M))|F}VV{M(Oxidation (M))|F}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}RVVS{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[VG]VV{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.3654;6.15;6.0398;5.8846;5.6594;5.5744;5.444;5.3756;5.359;5.3384 -;-;-;-;-;-;-;-;-;- 3594 NaN NaN 245772 NaN 15117 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18976 78.927 NaN 207220 35 0 13841 0.261 + 34792 YQTPRLWLF 9 60 612.3322255460869 1222.6498981589737 2 612.33251953125 MULTI HCD FTMS 0 0 0 18973 81188.6171875 0.037444112044846996 17 -0.4823760986328125 3 Unmodified _YQTPRLWLF_ ENSG00000144848|ENST00000283290|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3 36.506200033944 0.08138327636155518 2 {[HG]|PP}PT 4 8 23.729 0 0 1.9408 0 0 0 827.4571893591923 827.4571893591923 -3.706290716515923 0 -3.706290716515923 0 0 0.8494850021680094 0 0.3807196863200844 0 {[HG]|PP}PT 1.9408 - 62 + NaN NaN 124326.8 NaN 15118 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18977 78.93 NaN 326920 35 0 99100 0.261 + 10929 IYAPDNEQFI 10 41 605.2905095100588 1208.5664660869174 2 606.2997436523438 MULTI HCD FTMS 0 0 0 18973 86802.921875 0.34145348003521364 16 -0.45953369140625 4 Unmodified _IYAPDNEQFI_ REV__ENSG00000144736|ENST00000325599|SHQ1;REV__ENST00000437111.1_1_10:52389508-52390123:-|nuORF;REV__nc|ENSG00000144736|Q6PI26-2|SHQ1 4.3292370932331545 0.45238836448149167 2 W 1 -1 1.9897 0 0 0.16463 0 0 620.818249389455 398.64560877017817 1019.4638581596332 0 0 0 0 0 0 0 0 0 W 0.16463 - 6 + NaN NaN 136651.6 NaN 15119 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18978 78.933 NaN 110980 35 0 15503 0.261 + 21509 PYGSDFIRSI 10 46 577.7954995770741 1153.5764462209481 2 577.7953491210938 MULTI HCD FTMS 0 0 0 18973 34912.89453125 0.1072893229603567 6 -0.16387176513671875 5 Unmodified _PYGSDFIRSI_ REV__ENSG00000010932|ENST00000617670|FMO1;REV__ENST00000469112.5_2_1:171244541-171251486:+|nuORF;REV__ENST00000472893.1_1_1:171249954-171252285:+|nuORF;REV__nc|ENSG00000010932|Q01740-2|FMO1 4.897010918128616 0.4493830473644964 2 [C(Carbamidomethyl (C))M]{I|L} 3 -1 20.458 0 0 1.7734 0 0 0 746.3837532915106 746.3837532915106 17.35863111416478 0 0 0 0 1 0 0 0 [C(Carbamidomethyl (C))M]{I|L} 1.7734 - 11 + NaN NaN 103208.5 NaN 15120 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18979 78.937 NaN 102250 35 0 6720.3 0.263 + 14317 LDLPSRGR 8 52 457.2643882397774 912.5142235463549 2 457.26397705078125 MULTI HCD FTMS 0 0 0 18973 45599.625 0.694031479951543 -1 0.0228424072265625 6 Unmodified _LDLPSRGR_ REV__ENSG00000197530|ENST00000355826|MIB2;REV__ENST00000479659.5_1_1:1561777-1565907:+|nuORF;REV__ENST00000506488.5_1_1:1562112-1565907:+|nuORF;REV__ENST00000511502.5_1_1:1563563-1565907:+|nuORF;REV__nc|ENSG00000197530|Q96AX9-10|MIB2;REV__nc|ENSG00000197530|Q96AX9-3|MIB2;REV__nc|ENSG00000197530|Q96AX9-4|MIB2;REV__nc|ENSG00000197530|Q96AX9-5|MIB2;REV__nc|ENSG00000197530|Q96AX9-6|MIB2;REV__nc|ENSG00000197530|Q96AX9-7|MIB2;REV__nc|ENSG00000197530|Q96AX9-8|MIB2 4.75600775471527 0.5349361699807423 2 [EP]V[MD]{I|L}D 7 -1 18.996 0 0 2.0818 0 0 0 110.1493913532486 110.1493913532486 9.303556944260334 0 0 0 0 0 0 0 0 [EP]V[MD]{I|L}D 2.0818 - 106 NaN NaN 101412.7 NaN 15121 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18980 78.94 NaN 73139 35 0 17316 0.261 + -1 YVFMDLFYRS 10 35 452.88073747488494 NaN 0 452.8700256347656 PEAK HCD FTMS 0 0 0 18973 20336.595703125 0.9554053390675373 -3 0.0753173828125 7 Oxidation (M) _YVFM(Oxidation (M))DLFYRS_ REV__ENST00000551200.5_1_12:102471044-102512308:-|nuORF 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104336.9 NaN 15122 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18981 78.943 NaN 104020 35 0 13574 0.261 + 26302 SRRANLII 8 38 471.7956042269413 NaN 0 471.79547119140625 PEAK HCD FTMS 0 0 0 18973 17907.318359375 0.6328802540923366 8 -0.2363128662109375 8 Unmodified _SRRANLII_ ENSG00000129925|ENST00000431232|PGAP6 2.8892196856762586 0.38822285293237185 2 Y 1 8 5.4846 0 0 0.58249 0 0 130.17115122556385 645.3163546197874 775.4875058453513 0 0 0 0 0 0 0 0 0 Y 0.58249 - 7 + NaN NaN 101646.6 NaN 15123 3856 18973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18983 78.948 NaN 792530 35 0 40048 0.327 + 30903 VQVAGKAER 9 91 479.2775341566531 956.5405153801062 2 479.2774353027344 MULTI HCD FTMS 0 0 0 18982 738502.875 0.7377407887652055 6 -0.17058563232421875 1 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 2 Q 1 8 12.034 0 0 1.2581 0 0 458.27330376900085 367.1971914783735 825.4704952473744 0 0 0 0 0 0.6549471895720985 0 0 0 + Q 1.2581 + + 67 + NaN NaN 203048.1 NaN 15124 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18984 78.953 NaN 412550 35 0 107590 0.261 + 4914 FAIPLIEKL 9 69 522.3284730449058 1042.6423931566114 2 522.3287353515625 MULTI HCD FTMS 0 0 0 18982 238557.34375 0.06273561290254714 12 -0.34466552734375 2 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 55.50274090549119 0.023872834264864425 2 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]{I|L}EK{I|L} 9 0 + 55.212 0 0 5.2954 5.2954 84.126 0 0 0 3.107346925073955 3.107346925073955 3.107346925073955 3.107346925073955 0 2.110924374808178 0 0 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]{I|L}EK{I|L};{M(Oxidation (M))|F}A{I|L}[{I|L}P]{I|L}EK{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]{I|L}{[VA]|[{I|L}G]}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[{I|L}P]{I|L}[K{I|L}]E 5.2954;4.9974;3.8862;3.2817 +;+;-;- + 122 NaN NaN 170206.3 NaN 15125 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18985 78.956 NaN 409300 35 0 39909 0.261 + 13144 KYLLTPVNFF 10 73 621.3502208531647 1240.6858887731294 2 621.3499755859375 MULTI HCD FTMS 0 0 0 18982 239309.65625 0.8161279586189008 -3 0.07860565185546875 3 Unmodified _KYLLTPVNFF_ ENSG00000118655|ENST00000650450|DCLRE1B 49.52724829834842 0.07950882623896251 2 {I|L}[{I|L}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 39.456 0 0 3.1801 0 0 487.27974135566564 0 487.27974135566564 0 18.02887198244136 0 0 0 0.8252574989159953 0 0.4247425010840047 0.3054621874040891 {I|L}[{I|L}T]N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1801 - 319 NaN NaN 153408 NaN 15126 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18986 78.96 NaN 168780 35 0 15637 0.261 + -1 FESMNSFLI 9 68 552.2577659716078 NaN 0 552.2574462890625 PEAK HCD FTMS 0 0 0 18982 74939.140625 0.7851549054941224 -7 0.20638275146484375 4 Oxidation (M) _FESM(Oxidation (M))NSFLI_ REV__tr|U7SUJ6|U7SUJ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01194PE=4SV=1 22.736283301280096 0.1690317064107932 2 {I|L}{M(Oxidation (M))|F}C 3 -1 22.92 0 0 2.0789 0 0 131.09747016363457 605.2363985650999 736.3338687287344 0 0 0 0 0 1.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}C 2.0789 - 45 + NaN NaN 114732.8 NaN 15127 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18987 78.963 NaN 136070 35 0 14427 0.261 + 35644 YYIFIPSKF 9 44 589.3186317703555 NaN 0 589.31884765625 PEAK HCD FTMS 0 0 0 18982 61036.02734375 0.4723770538736754 7 -0.2068023681640625 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 2 {I|L} 1 8 14.732 0 0 1.2521 0 0 737.4128545057516 323.1027010553344 1060.515555561086 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2521 + + 18 + NaN NaN 126218.5 NaN 15128 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18988 78.966 NaN 119380 35 0 16413 0.261 -1 AEMLPGVLQQF 11 46 624.8184239177995 1247.6222949023988 2 624.818115234375 MULTI HCD FTMS 0 0 0 18982 43775.5703125 0.44294329582293124 7 -0.2068023681640625 6 Oxidation (M) _AEM(Oxidation (M))LPGVLQQF_ ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF;nc|ENSG00000104419|Q92597-2|NDRG1;nc|ENSG00000104419|Q92597-3|NDRG1 21.590151480376914 0.2689667140516965 2 {I|L}[RP]{I|L}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7 -1 35.233 0 0 2.824 0 0 347.11470229316564 0 347.11470229316564 0 29.74886953798432 0 0 0 1.9247425010840047 0 0 0 {I|L}[RP]{I|L}Q{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.824 - 47 NaN NaN 117238.8 NaN 15129 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18989 78.969 NaN 89000 35 0 10035 0.264 + 14744 LHSSSNNF 8 48 453.20969455154255 NaN 0 453.20989990234375 PEAK HCD FTMS 0 0 0 18982 24741.224609375 0.5315675634483813 7 -0.2068023681640625 7 Unmodified _LHSSSNNF_ REV__ENSG00000126561|ENST00000590949|STAT5A;REV__ENSG00000173757|ENST00000293328|STAT5B;REV__ENST00000468496.5_1_17:40362419-40369297:-|nuORF;REV__ENST00000591556.1_1_17:40458135-40460407:+|nuORF;REV__nc|ENSG00000126561|P42229-2|STAT5A 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111473.5 NaN 15130 3857 18982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18991 78.974 NaN 434250 35 0 17312 0.327 -1 0 89 501.29047871913184 500.28320225253185 1 501.29071044921875 MULTI HCD FTMS 0 0 0 18990 396883.59375 0.8416465669913629 7 -0.21025848388671875 1 NaN NaN 2 V 1 -1 6.4794 0 0 1.2951 0 0 174.0894576069142 224.0976961725219 398.18715377943613 0 0 0 0 0 0.25 0 0 0 V 1.2951 - 17 + NaN NaN 162961.4 NaN 15131 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18992 78.979 NaN 336390 35 0 47757 0.261 + 18291 MPDVELNL 8 52 465.73369609038144 929.4528392475629 2 465.73358154296875 MULTI HCD FTMS 0 0 0 18990 324704.46875 0.6090385150130992 7 -0.21025848388671875 2 Unmodified _MPDVELNL_ ENSG00000124942|ENST00000378024|AHNAK 42.09456458481378 0.20402248593209013 2 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L} 8 3 + 52.924 0 0 5.6941 5.6941 88.803 0 0 0 13.767507096020992 27.237832493935556 13.767507096020992 9.262137858390815 0 0.7742275032520141 1.3979400086720375 0 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}P[MD]{I|L}GG{I|L} 5.6941;4.6976 -;- 65 NaN NaN 143534.3 NaN 15132 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18993 78.982 NaN 439840 35 0 34223 0.261 + 20929 PLAFLVIMA 9 81 487.79076122415506 973.5669695151101 2 487.790771484375 MULTI HCD FTMS 0 0 0 18990 309062.0625 0.347425820442494 7 -0.21025848388671875 3 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 5.230669730166228 0.3113646817964458 2 APAQ{I|L} 5 7 15.534 0 0 1.5956 0 0 61.053991447039785 429.21418176822505 490.2681732152648 0 0 0 0 0 0.2742275032520141 0 0 0.3494850021680094 APAQ{I|L} 1.5956 - 218 + NaN NaN 153765 NaN 15133 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18994 78.986 NaN 191830 35 0 12635 0.261 + 26648 SYADNILSF 9 51 515.247897943828 1028.4812429544559 2 515.2479248046875 MULTI HCD FTMS 0 0 0 18990 110864.96875 0.4985873719215101 3 -0.0886077880859375 4 Unmodified _SYADNILSF_ ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion 60.07390631473393 0.0174780869009295 2 {I|L}{I|L}S{M(Oxidation (M))|F} 4 5 54.993 0 0 5.347 0 0 550.2015236122204 0 550.2015236122204 0 44.53524722859527 0 0 0 1.9247425010840047 0 0.3807196863200844 0 + {I|L}{I|L}S{M(Oxidation (M))|F} 5.347 + + 130 NaN NaN 137918 NaN 15134 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18995 78.989 NaN 340870 35 0 22435 0.261 + 16485 LSYMDVSRN 9 68 542.758404600094 1083.5022562669878 2 542.7749633789062 MULTI HCD FTMS 0 0 0 18990 16768.212890625 1 0 0 5 Unmodified _LSYMDVSRN_ ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1 20.453626601364224 0.18364154288633264 2 [Y{I|L}]V{I|L}CCG{[TV]|[{I|L}S]}N 10 7 + 42.905 0 0 3.9598 3.9598 81.056 0 0 0 0.28028723600243666 4.188842541751754 0.28028723600243666 0.28028723600243666 0 0 1.3010299956639813 0.5 0 [Y{I|L}]V{I|L}CCG{[TV]|[{I|L}S]}N;{[CT]|[{M(Oxidation (M))|F}G]}NYNVG{[TV]|[{I|L}S]}N;[Y{I|L}]{I|L}VCCG{[TV]|[{I|L}S]}N;[Y{I|L}]{I|L}CCVG{[TV]|[{I|L}S]}N;N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VNYNW;{[CT]|[{M(Oxidation (M))|F}G]}NYNGV{[TV]|[{I|L}S]}N;[Y{I|L}]{I|L}CCGV{[TV]|[{I|L}S]}N;{[CT]|[{M(Oxidation (M))|F}G]}NYGGVG{[TV]|[{I|L}S]}N;{[CT]|[{M(Oxidation (M))|F}G]}GGYNVG{[TV]|[{I|L}S]}N;N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VNYGGW 3.9598;3.934;3.682;3.682;3.5197;3.3783;3.1263;3.0881;3.0881;2.6649 -;-;-;-;-;-;-;-;-;- 663 NaN NaN 145766.4 NaN 15135 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18996 78.992 NaN 392070 35 0 209820 0.261 + 21057 PLVLQKFF 8 51 496.30415354247714 NaN 0 496.3042297363281 PEAK HCD FTMS 0 0 0 18990 66631.1875 0.20928946933948606 7 -0.21025848388671875 6 Unmodified _PLVLQKFF_ ENSG00000088756|ENST00000383472|ARHGAP28;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;nc|ENSG00000088756|Q9P2N2-5|ARHGAP28 5.760428011301431 0.38822285293237185 2 {I|L}{M(Oxidation (M))|F} 2 6 7.4743 0 0 0.75452 0 0 565.35386875312 162.0559023492797 727.4097711023996 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.75452 - 11 + NaN NaN 158882.3 NaN 15136 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18997 78.996 NaN 347390 35 0 31706 0.261 -1 PLAHMSLVL 9 77 498.779655635795 NaN 0 498.7818298339844 PEAK HCD FTMS 0 0 0 18990 26815.7578125 0.37869576562109536 -5 0.13103485107421875 7 Oxidation (M) _PLAHM(Oxidation (M))SLVL_ tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1 23.1484247019978 0.16626532474190622 2 MVA{I|L}Q 5 -1 21.682 0 0 2.1779 0 0 130.08151478545875 320.1582125299438 450.23972731540255 0 0 0 0 0 0 0 0 0 MVA{I|L}Q 2.1779 - 125 + NaN NaN 149431.3 NaN 15137 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 18998 78.999 NaN 142780 35 0 8587.8 0.261 + -1 LFSCIVQI 8 64 490.2685703787751 978.5225878243502 2 490.2683410644531 MULTI HCD FTMS 0 0 0 18990 59919.5234375 0.2505383192001745 7 -0.21025848388671875 8 Carbamidomethyl (C) _LFSC(Carbamidomethyl (C))IVQI_ REV__ENST00000514696.1_1_5:83683960-83695444:+|nuORF 5.760428011301431 0.5334459684533844 2 WN 2 -1 4.068 0 0 0.41573 0 0 132.080668170769 543.2998751275999 675.3805432983688 0 0 0 0 0 0 0 0 0 WN 0.41573 - 39 + NaN NaN 114149.6 NaN 15138 3858 18990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19000 79.004 NaN 1612800 35 0 490570 0.327 + 20420 PAAVAFKIIF 10 86 538.8287430035074 1075.6429330738147 2 538.828857421875 MULTI HCD FTMS 0 0 0 18999 741732.5625 0.6812378729862169 2 -0.05910491943359375 1 Unmodified _PAAVAFKIIF_ ENST00000578270.5_1_18:19239172-19243683:-|nuORF 21.74664581756881 0.3077012291670537 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 7 25.534 0 0 2.3738 0 0 684.3939704262209 0 684.3939704262209 0 8.979852382583928 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 2.3738 - 238 NaN NaN 329361.3 NaN 15139 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19001 79.008 NaN 1396300 35 0 528970 0.262 -1 0 40 422.1985239190314 842.3824949048628 2 422.1987609863281 MULTI HCD FTMS 0 0 0 18999 521809.21875 0.42085117723637006 8 -0.233123779296875 2 NaN NaN 2 Q 1 -1 5.4846 0 0 0.65108 0 0 97.96576014099408 613.3336886041624 711.2994487451565 0 0 0 0 0 0 0 0 0 Q 0.65108 - 10 + NaN NaN 300429.8 NaN 15140 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19002 79.012 NaN 839000 35 0 67573 0.261 + 24456 RYLDLFTSF 9 64 581.3004618451429 1160.5863707570857 2 581.3009643554688 MULTI HCD FTMS 0 0 0 18999 265854.75 0.04392327005339841 14 -0.39715576171875 3 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 96.36657018975838 0.004359138328518304 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVD{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 10 3 + 83.566 0 0 7.2004 7.2004 88.822 0 0 0 7.939455175668755 53.182254983517566 7.939455175668755 6.7609125905568135 0 2.7134679910804405 1.3010299956639813 0.8807196863200843 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVD{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][KQ]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[{I|L}A][KG]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Q{I|L}][KG]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[YQ][{I|L}A][KG]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};[RN]{[ET]|[MV]}{I|L}DVV{[ES]|[DT]|[{I|L}C]} 7.2004;6.6178;5.4527;5.284;5.0606;4.9052;3.8918;1.3156 -;-;-;-;-;-;-;- 297 NaN NaN 222806.2 NaN 15141 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19003 79.015 NaN 730370 35 0 75630 0.261 + 22954 QYVVDLTSF 9 89 536.2716912255555 1070.528829517911 2 536.27197265625 MULTI HCD FTMS 0 0 0 18999 108728.5390625 0.24870069339716577 4 -0.11487579345703125 4 Unmodified _QYVVDLTSF_ ENSG00000135778|ENST00000366628|NTPCR;ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF 86.33184430468982 0.004622086694044132 2 QPVD{I|L}TS{M(Oxidation (M))|F} 8 2 55.916 0 0 5.2232 0 0 165.0843060470052 0 165.0843060470052 0 46.45182188008598 0 0 0 1.863982988912431 0 0.8962566630072955 0 QPVD{I|L}TS{M(Oxidation (M))|F} 5.2232 - 1073 + NaN NaN 207603 NaN 15142 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19004 79.019 NaN 239370 35 0 61351 0.261 + 30027 VFPFRTFYL 9 44 595.3239836548272 1188.6334143764543 2 595.3239135742188 MULTI HCD FTMS 0 0 0 18999 75382.65625 0.2506447315921597 8 -0.233123779296875 5 Unmodified _VFPFRTFYL_ ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 13.90604991867851 0.24021115267848145 2 D{I|L} 2 8 25.969 0 0 2.1848 0 0 942.4954966132519 0 942.4954966132519 0 25.255762612236904 0 0 0 0.5 0 0 0 D{I|L} 2.1848 - 18 NaN NaN 126197.2 NaN 15143 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19005 79.022 NaN 136400 35 0 11971 0.261 + 17509 LYTKNKVSLE 10 47 597.8400347815957 1193.6655166299913 2 597.8402709960938 MULTI HCD FTMS 0 0 0 18999 40840.64453125 0.07464007981327482 9 -0.26268768310546875 6 Unmodified _LYTKNKVSLE_ tr|U7SFN0|U7SFN0_FUSNUCRISPRsystemCmsproteinCsm4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02352PE=3SV=1 9.38312468134398 0.42334543440173333 2 {I|L}E{I|L} 3 8 24.693 0 0 2.0686 0 0 820.4450550763687 0 820.4450550763687 0 20.088643834802156 0 0 0 0 0 0 0 {I|L}E{I|L} 2.0686 - 14 NaN NaN 106520.4 NaN 15144 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19006 79.025 NaN 144790 35 0 22870 0.261 + 24266 RYFLPPYTF 9 39 602.3135811492392 1202.6126093652783 2 602.3135986328125 MULTI HCD FTMS 0 0 0 18999 13117.2197265625 0.13242789303165192 9 -0.26268768310546875 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.27331982688540024 2 T{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1594 0 0 936.4845953044841 0 936.4845953044841 0 18.979400086720375 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1594 + + 9 NaN NaN 112552 NaN 15145 3859 18999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19008 79.03 NaN 4086000 35 0 1593300 0.327 -1 QATMSGKS 8 65 413.19305416906394 824.3715554049279 2 413.1935119628906 MULTI HCD FTMS 0 0 0 19007 1751012.75 0.4241005941845841 9 -0.26273345947265625 1 Oxidation (M) _QATM(Oxidation (M))SGKS_ ENSG00000198483|ENST00000355594|ANKRD35 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 13.227 0 0 1.6045 0 0 155.0924368155167 553.1700533502561 708.2624901657728 0 0 0 0 0 0.7742275032520141 0 0 0 {I|L} 1.6045 - 6 + NaN NaN 709961.6 NaN 15146 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19009 79.035 NaN 1770300 35 0 253600 0.261 + 20192 NYLDRFLSL 9 99 570.8059667679497 1139.5973806026993 2 570.80615234375 MULTI HCD FTMS 0 0 0 19007 1112651.375 0.04052623302272912 10 -0.29559326171875 2 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 143.90916361153978 1.5265063399744E-05 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 114.27 0 0 10.027 10.027 96.179 0 0 0 13.385292544721409 13.385292544721409 13.385292544721409 14.286662482156345 0 2.8494850021680094 1.6989700043360187 0.2742275032520141 1.7447026752325154 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV]QDR{M(Oxidation (M))|F}S{I|L}{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}S{I|L}{I|L};[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}R{M(Oxidation (M))|F}{I|L}S{I|L};{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F}[RD][YN]{I|L} 10.027;8.7733;7.5799;6.6107;6.4865;6.3262;5.498;5.2328;4.1134;2.0455 +;-;-;-;-;-;-;-;-;- + 1719 NaN NaN 379443.6 NaN 15147 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19010 79.038 NaN 1033500 35 0 135670 0.261 + 13574 KYPENFFLL 9 70 585.8131605635726 1169.6117681939452 2 585.8134155273438 MULTI HCD FTMS 0 0 0 19007 680241.625 0.0034578555444139195 135 -3.761505126953125 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 93.16586880292088 0.00444300900000894 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 88.114 0 0 7.5336 7.5336 90.023 0 0 0 8.182503180159344 16.478174818886373 8.182503180159344 8.182503180159344 0 2.6307196863200843 0 0 1.622363747448347 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 7.5336;6.834;6.7463;6.4212;6.0468;6.0468;5.8571;5.7216;5.6339;5.4605 +;-;-;-;-;-;-;-;-;- + 1113 NaN NaN 241520.3 NaN 15148 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19011 79.042 NaN 1310600 35 0 184480 0.262 + 32301 VYVAIQAVL 9 96 488.2973634844593 974.5801740357186 2 488.2978210449219 MULTI HCD FTMS 0 0 0 19007 451635.15625 0.15589018889859005 -5 0.13428497314453125 4 Unmodified _VYVAIQAVL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 85.35673624503755 0.00464763827098139 2 [YV]VA{I|L}QAV{I|L} 9 0 + 86.45 0 0 8.8705 8.8705 94.595 0 0 0 14.137342758552691 67.9997593058746 14.137342758552691 11.822581265925436 0 2.524227503252014 1 0 0.2614393726401688 + + [YV]VA{I|L}QAV{I|L};[YV]VA{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QAV{I|L};{[VA]|[{I|L}G]}[Y{I|L}]VQAV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}[AG]AV{I|L};[YV][{I|L}A]VQAV{I|L};{[VA]|[{I|L}G]}[Y{I|L}]V[AG]AV{I|L};{[VA]|[{I|L}G]}Q{I|L}[YV]AV{I|L};[YV][{I|L}A]V[AG]AV{I|L};{[VA]|[{I|L}G]}[AG]{I|L}[YV]AV{I|L} 8.8705;7.6574;7.3064;6.1534;6.0933;5.5894;4.9403;4.58;4.3763;3.3669 +;-;-;-;-;-;-;-;-;- + 664 NaN NaN 284368.2 NaN 15149 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19012 79.045 NaN 343780 35 0 57392 0.261 + 17467 LYSNIAFNL 9 52 527.782301362313 1053.5500497914259 2 527.7821655273438 MULTI HCD FTMS 0 0 0 19007 108018.984375 0.2720104412877053 3 -0.088653564453125 5 Unmodified _LYSNIAFNL_ ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 49.55428908609986 0.03219431099695407 2 {I|L}A{M(Oxidation (M))|F}N{I|L} 5 4 48.236 0 0 4.5785 0 0 477.2208729474625 0 477.2208729474625 0 40.656598407383285 0 0 0 1.5 0 0 0.3494850021680094 + {I|L}A{M(Oxidation (M))|F}N{I|L} 4.5785 + + 178 NaN NaN 142559.1 NaN 15150 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19013 79.048 NaN 390800 35 0 67293 0.261 + 16937 LYGVFTIHF 9 69 548.7950383560909 1095.5755237789817 2 548.7952270507812 MULTI HCD FTMS 0 0 0 19007 137138.828125 0.40935187979252763 3 -0.088653564453125 6 Unmodified _LYGVFTIHF_ ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1 117.59872219059416 0.0017018906413822257 2 {I|L}YGV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F} 9 0 + 93.123 0 0 8.4999 8.4999 90.384 0 0 0 13.587761233176565 5.545970543767112 5.545970543767112 5.545970543767112 0 2.6571406706489746 2 0.75 0 + + {I|L}YGV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};{I|L}YGV{M(Oxidation (M))|F}TH{I|L}{M(Oxidation (M))|F};[Y{I|L}]GV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};{I|L}YR[KC]VV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{M(Oxidation (M))|F}T{I|L}H{M(Oxidation (M))|F};[Y{I|L}]K[{M(Oxidation (M))|F}E]{I|L}H{M(Oxidation (M))|F};{I|L}YVV{M(Oxidation (M))|F}[TA]H{M(Oxidation (M))|F} 8.4999;7.9937;7.2596;5.8375;4.4282;4.2059;3.4 +;-;+;-;-;-;- + 449 + NaN NaN 142492.7 NaN 15151 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19014 79.052 NaN 371920 35 0 70839 0.261 + 14245 LCFRHEVL 8 72 508.7710496952058 1015.5275464572117 2 509.28424072265625 MULTI HCD FTMS 0 0 0 19007 7964.2109375 0.23960511256165268 -5 0.13428497314453125 7 Unmodified _LCFRHEVL_ chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|26 7.910154910731844 0.5302565402355366 2 VV{[QC]|[C(Carbamidomethyl (C))A]}PEV{I|L} 8 5 27.128 0 0 2.6713 0 0 130.06902130835493 0 130.06902130835493 0 21.64320017660792 0 0 0 0.7742275032520141 0 0 0 VV{[QC]|[C(Carbamidomethyl (C))A]}PEV{I|L} 2.6713 - 107 + NaN NaN 141537.6 NaN 15152 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19015 79.055 NaN 387260 35 0 71025 0.261 + 1429 AYQLMVDVF 9 51 551.2679374294765 1100.521321925753 2 551.2686767578125 MULTI HCD FTMS 0 0 0 19007 108624.6796875 0.1187160483395688 -9 0.25556182861328125 8 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 60.07390631473393 0.0174780869009295 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 9 3 + 74.887 0 0 6.8047 6.8047 95.048 0 0 0 2.9440873258899813 44.710084362531575 2.9440873258899813 74.88737203213589 0 2.4247425010840047 1.3979400086720375 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 6.8047 - 229 NaN NaN 148992.5 NaN 15153 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19016 79.058 NaN 269470 35 0 35638 0.261 + 15747 LPFLEHLEL 9 66 555.8132582310474 1109.6119635288946 2 555.8134765625 MULTI HCD FTMS 0 0 0 19007 93807.4609375 0.3102566359159848 -6 0.1605377197265625 9 Unmodified _LPFLEHLEL_ ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18 52.268347100219714 0.028397529699942435 2 {I|L}P{M(Oxidation (M))|F}{I|L}E 5 4 60.904 0 0 5.4888 0 0 0 507.2556246393188 507.2556246393188 30.153631197717985 0 0 0 0 0.8252574989159953 1.5228787452803376 0.8494850021680094 0 + {I|L}P{M(Oxidation (M))|F}{I|L}E 5.4888 + + 346 + NaN NaN 136359.6 NaN 15154 3860 19007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19018 79.063 NaN 1110800 35 0 179310 0.327 + 13811 KYPSPFFVF 9 94 566.2972883717671 1130.580023810334 2 566.297607421875 MULTI HCD FTMS 0 0 0 19017 576207.375 0.005183658716956353 66 -1.8381729125976562 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 78.7280429016045 0.006263961847259105 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 74.715 0 0 6.6086 6.6086 91.051 0 0 0 9.137342758552691 52.353998963943546 9.137342758552691 12.028937514676485 0 2.8494850021680094 0 0.6861818737241735 0.3494850021680094 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[YQ]AK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F} 6.6086;5.5446;5.5126;4.8254;4.5768;4.2664;3.8491;3.7999;3.7056;3.7056 +;-;-;-;-;-;-;-;-;- + 2637 NaN NaN 269838.4 NaN 15155 3861 19017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19019 79.067 NaN 241500 35 0 32841 0.261 + 32278 VYTVVDEMFL 10 56 616.2994505061508 1230.5843480791016 2 616.2999877929688 MULTI HCD FTMS 0 0 0 19017 69892.359375 0.018717813942131397 -29 0.8258209228515625 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 69.10491478415734 0.018645933849003846 2 {M(Oxidation (M))|F}EDV{I|L}A{M(Oxidation (M))|F}{I|L} 8 7 63.353 0 0 5.1482 0 0 278.1627369611344 0 278.1627369611344 0 56.36291294060548 0 0 0 2.1237125054200234 0 0 0 {M(Oxidation (M))|F}EDV{I|L}A{M(Oxidation (M))|F}{I|L} 5.1482 - 200 NaN NaN 145363.1 NaN 15156 3861 19017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19020 79.071 NaN 225870 35 0 53052 0.261 + 6073 FPEDVVRVIF 10 63 610.8368822329892 1219.6592115327783 2 610.8375244140625 MULTI HCD FTMS 0 0 0 19017 37491.25 0.4881962209269795 1 -0.0195465087890625 3 Unmodified _FPEDVVRVIF_ ENSG00000146192|ENST00000274963|FGD2;ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF 39.212999716063884 0.15223626971197562 2 {M(Oxidation (M))|F}PEDVVRV{I|L}{M(Oxidation (M))|F} 10 0 + 52.63 0 0 4.3151 4.3151 90.615 0 0 0 38.42863739093026 7.275071725447404 7.275071725447404 52.62964706465603 0 1.7786596949921218 0 0.5 0 + + {M(Oxidation (M))|F}PEDVVRV{I|L}{M(Oxidation (M))|F} 4.3151 + + 71 + NaN NaN 137632.2 NaN 15157 3861 19017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19021 79.074 NaN 255340 35 0 53620 0.261 + 6076 FPEEAVLQQAF 11 43 639.8218371855683 1277.6291214379364 2 639.8218994140625 MULTI HCD FTMS 0 0 0 19017 84599.4609375 1 0 0 4 Unmodified _FPEEAVLQQAF_ ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF 32.89776655970281 0.18269067959614227 2 V{I|L}QQA{M(Oxidation (M))|F} 6 5 66.019 0 0 5.1673 0 0 573.2413807599625 0 573.2413807599625 0 59.02880645020623 0 0 0 2.4247425010840047 0 0 0 + V{I|L}QQA{M(Oxidation (M))|F} 5.1673 + + 202 NaN NaN 133471 NaN 15158 3861 19017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19022 79.078 NaN 408630 35 0 80438 0.262 + 3194 EDALYFPVL 9 64 533.776728258596 1065.538903583992 2 533.777099609375 MULTI HCD FTMS 0 0 0 19017 130796.6640625 0.7476634474780541 -2 0.05910491943359375 5 Unmodified _EDALYFPVL_ ENSG00000179292|ENST00000327259|TMEM151A 12.531546534597751 0.2520865569484384 2 V{I|L} 2 7 25.969 0 0 2.4372 0 0 835.3703473999785 0 835.3703473999785 0 9.798187706630156 0 0 0 0.5 0 0 0 + V{I|L} 2.4372 + + 31 NaN NaN 155850.7 NaN 15159 3861 19017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19024 79.083 NaN 618740 35 0 30255 0.327 + 30904 VQVAGKAER 9 82 479.2775341566531 956.5405153801062 2 479.27734375 MULTI HCD FTMS 0 0 0 19023 579750.875 0.5791526103535048 11 -0.31850433349609375 1 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 2 Q 1 8 10.401 0 0 1.0874 0 0 458.27342686620676 367.1963676211637 825.4697944873705 0 0 0 0 0 0.6421590589602533 0 0 0 + Q 1.0874 + + 46 + NaN NaN 192822.7 NaN 15160 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19025 79.087 NaN 338840 35 0 77832 0.261 + 4915 FAIPLIEKL 9 69 522.3284730449058 1042.6423931566114 2 522.3284301757812 MULTI HCD FTMS 0 0 0 19023 134282.328125 0.035313455559478325 17 -0.475677490234375 2 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 36.506200033944 0.08138327636155518 2 {I|L}S{I|L} 3 7 30.177 0 0 2.8943 0 0 711.4526246131161 0 711.4526246131161 0 14.69273760456403 0 0 0 1 0 0 0 {I|L}S{I|L} 2.8943 - 100 NaN NaN 137658.3 NaN 15161 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19026 79.091 NaN 283590 35 0 87813 0.261 + 33512 YIEEGVMINSG 11 52 606.2835315147481 NaN 0 606.3004150390625 PEAK HCD FTMS 0 0 0 19023 12992.6015625 0.35714273442784894 -1 0.0195465087890625 3 Unmodified _YIEEGVMINSG_ tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 5.296884461304476 0.3270944076746277 2 C(Carbamidomethyl (C)) 1 11 5.4846 0 0 0.45306 0 0 519.3105189847712 528.1861666315061 1047.4966856162773 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.45306 - 2 + NaN NaN 125637.2 NaN 15162 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19027 79.094 NaN 269020 35 0 21760 0.261 + 19842 NYAWVYYHL 9 55 614.7930095767014 1227.5714662202026 2 614.79296875 MULTI HCD FTMS 0 0 0 19023 107750.7578125 0.7116372091592926 -13 0.3635101318359375 4 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 66.45667989310934 0.010234776021261575 2 [YN]AWVYYH{I|L} 9 0 + 88.215 0 0 7.1861 7.1861 95.883 0 0 0 17.557809497117844 14.973024840566467 14.973024840566467 88.21510327638123 0 2.5356668758921828 1.6989700043360187 0 0.3807196863200844 + + [YN]AWVYYH{I|L} 7.1861 + + 247 NaN NaN 136127.1 NaN 15163 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19028 79.097 NaN 100350 35 0 5488.3 0.264 + 20620 PEVRSLRG 8 53 457.2643882397774 912.5142235463549 2 457.2643127441406 MULTI HCD FTMS 0 0 0 19023 39768.953125 0.6052879907119256 5 -0.15447235107421875 5 Unmodified _PEVRSLRG_ REV__ENST00000480291.1_7:100609366-100609411:+|nuORF 5.230669730166228 0.5342319408533849 2 [EP]V 3 -1 22.676 0 0 2.485 0 0 0 584.3283464313736 584.3283464313736 15.374015516889372 0 0 0 0 0 1.2218487496163564 0 0 [EP]V 2.485 + + 29 NaN NaN 100106.4 NaN 15164 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19029 79.101 NaN 162620 35 0 22674 0.261 + -1 NYLAQFRLCS 10 51 636.3141975454013 1270.6138421576024 2 636.8161010742188 MULTI HCD FTMS 0 0 0 19023 31209.158203125 0.6528116583284764 2 -0.07244110107421875 6 Carbamidomethyl (C) _NYLAQFRLC(Carbamidomethyl (C))S_ REV__ENST00000478461.1_1_4:186508783-186510953:-|nuORF 8.155526934196011 0.43213520406898465 2 [YN]{I|L} 3 -1 36.695 0 0 2.888 0 0 0 877.4011095738712 877.4011095738712 34.220449851406514 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [YN]{I|L} 2.888 + + 39 NaN NaN 112327.3 NaN 15165 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19030 79.104 NaN 642260 35 0 207050 0.263 + -1 ELVMSSLSF 9 65 514.7531435308916 1027.4917341285832 2 515.2473754882812 MULTI HCD FTMS 0 0 0 19023 9909.052734375 0.16932640635333765 -1 0.0195465087890625 7 Oxidation (M) _ELVM(Oxidation (M))SSLSF_ REV__NODAL|p.G149S|1|0.12|ENSG00000156574|chr10:70435732-70435732|C/T|missense_variant 11.640296217721598 0.25978676193971967 2 {I|L}S{M(Oxidation (M))|F} 3 -1 25.688 0 0 2.5 0 0 662.296801122527 0 662.296801122527 0 14.093793813122062 0 0 0 0 0 0.25 0 {I|L}S{M(Oxidation (M))|F} 2.5 + + 279 + NaN NaN 182696.5 NaN 15166 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19031 79.107 NaN 94016 35 0 8912.2 0.261 + 10013 IESWLELFN 9 48 575.7922064685249 1149.5698600038497 2 575.7911987304688 MULTI HCD FTMS 0 0 0 19023 15211.99609375 0.23249676145116122 -13 0.3635101318359375 8 Unmodified _IESWLELFN_ REV__ENSG00000067369|ENST00000382044|TP53BP1;REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF;REV__nc|ENSG00000067369|Q12888-3|TP53BP1;REV__nc|ENSG00000067369|Q12888|TP53BP1 10.823927491677226 0.26684000660059787 2 E{I|L} 2 -1 20.969 0 0 1.8241 0 0 889.432520220072 0 889.432520220072 0 6.9897000433601875 0 0 0 0 0 0 0 E{I|L} 1.8241 + + 19 NaN NaN 97751 NaN 15167 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19032 79.111 NaN 51693 35 0 5543.7 0.261 -1 LMEKLINF 8 34 512.2813395281884 1022.5481261231768 2 512.2814331054688 MULTI HCD FTMS 0 0 0 19023 7042.44775390625 0.07933526584516835 10 -0.29566192626953125 9 Oxidation (M) _LM(Oxidation (M))EKLINF_ tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.4282 0 0 857.4696024188783 0 857.4696024188783 0 1.1607435312808434 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4282 + + 7 + NaN NaN 93508.9 NaN 15168 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19033 79.114 NaN 127760 35 0 6070.5 0.261 + 2120 DFLQFAVMF 9 55 559.2727934132644 NaN 0 559.2894287109375 PEAK HCD FTMS 0 0 0 19023 6506.17919921875 1 0 0 10 Unmodified _DFLQFAVMF_ REV__ENSG00000004864|ENST00000265631|SLC25A13;REV__nc|ENSG00000004864|Q9UJS0-2|SLC25A13 4.3292370932331545 0.2742679634796037 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.71281 0 0 349.09695172605615 470.27292810611567 819.3698798321718 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.71281 + + 8 + NaN NaN 109750.9 NaN 15169 3862 19023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19035 79.119 NaN 346270 35 0 25360 0.327 -1 0 77 501.29047871913184 500.28320225253185 1 501.2903747558594 MULTI HCD FTMS 0 0 0 19034 228892.328125 0.4853978476581128 12 -0.3346710205078125 1 NaN NaN 2 VP 2 -1 5.3052 0 0 1.0604 0 0 130.0632576621178 171.0660799615844 301.1293376237022 0 0 0 0 0 0.4247425010840047 0 0 0 VP 1.0604 - 13 + NaN NaN 135116.2 NaN 15170 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19036 79.123 NaN 236830 35 0 23733 0.261 + 13145 KYLLTPVNFF 10 64 621.3502208531647 1240.6858887731294 2 621.3501586914062 MULTI HCD FTMS 0 0 0 19034 152419.109375 0.5198014093454689 3 -0.09209442138671875 2 Unmodified _KYLLTPVNFF_ ENSG00000118655|ENST00000650450|DCLRE1B 26.020703789607367 0.2677231329712098 2 N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 34.45 0 0 2.7767 0 0 814.4925404279312 0 814.4925404279312 0 20.6246936830415 0 0 0 0.8252574989159953 0 0 0 + N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.7767 + + 97 NaN NaN 136751.5 NaN 15171 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19037 79.127 NaN 283280 35 0 42866 0.262 + 28167 TKIWEEVL 8 74 509.28462891052817 1016.5547048878564 2 509.8038024902344 MULTI HCD FTMS 0 0 0 19034 81837.1171875 0.9071094359150926 3 -0.09209442138671875 3 Unmodified _TKIWEEVL_ sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2 11.640296217721598 0.50814828952472 2 V{I|L} 2 6 25.969 0 0 2.5546 0 0 786.3921499476562 0 786.3921499476562 0 16.264100213633768 0 0 0 0.5 0 0 0 + V{I|L} 2.5546 + + 64 NaN NaN 130102.5 NaN 15172 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19038 79.13 NaN 315740 35 0 43218 0.261 + 25763 SLEAFTCSLI 10 48 542.2730340099656 1082.5315150867311 2 542.2733154296875 MULTI HCD FTMS 0 0 0 19034 96385.96875 0.5434521033378856 -6 0.17058563232421875 4 Unmodified _SLEAFTCSLI_ REV__ENSG00000146463|ENST00000314607|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4;REV__nc|ENSG00000146463|Q5VZL5-4|ZMYM4 30.636539890814138 0.2266618088935899 2 GVS{I|L}{I|L} 5 -1 56.498 0 0 5.2191 0 0 595.2381458966812 0 595.2381458966812 0 49.508272069161734 0 0 0 1.3807196863200843 0 0.9247425010840047 0 GVS{I|L}{I|L} 5.2191 - 119 NaN NaN 138828.9 NaN 15173 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19039 79.134 NaN 228690 35 0 25113 0.261 + 20609 PEPVGINSSI 10 55 506.77131900883 NaN 0 506.771728515625 PEAK HCD FTMS 0 0 0 19034 51735.90625 1 0 0 5 Unmodified _PEPVGINSSI_ ENSG00000129204|ENST00000574788|USP6;nc|ENSG00000129204|P35125-3|USP6 17.44264345198275 0.3013506509911793 2 V 1 9 14.877 0 0 1.4707 0 0 323.14912797499045 586.2886446588499 909.4377726338403 0 0 0 0 0 0.7887254899964358 0 0 0 + V 1.4707 + + 5 + NaN NaN 122997.6 NaN 15174 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19040 79.137 NaN 151870 35 0 24703 0.261 + -1 NYLAQFRLCS 10 40 636.3141975454013 1270.6138421576024 2 636.8167724609375 MULTI HCD FTMS 0 0 0 19034 23767.837890625 0.49715924945094103 3 -0.09209442138671875 6 Carbamidomethyl (C) _NYLAQFRLC(Carbamidomethyl (C))S_ REV__ENST00000478461.1_1_4:186508783-186510953:-|nuORF 8.155526934196011 0.43213520406898465 2 [YN]{I|L} 3 -1 36.695 0 0 2.888 0 0 0 877.4008164513635 877.4008164513635 36.69469995980698 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [YN]{I|L} 2.888 + + 26 NaN NaN 119022.2 NaN 15175 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19041 79.14 NaN 482870 35 0 40616 0.261 + 34429 YPETLGRLLIL 11 93 644.3873405634052 1286.7601281936104 2 644.3883056640625 MULTI HCD FTMS 0 0 0 19034 140416.015625 0.28671574293040886 -4 0.11487579345703125 7 Unmodified _YPETLGRLLIL_ ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 85.76441949171179 0.0044415895473843 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{I|L}{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L} 11 0 + 70.811 0 0 5.5031 5.5031 83.835 0 0 0 1.7339374311232802 16.575773191777927 1.7339374311232802 1.7339374311232802 0 2.274227503252014 0 1.3411290632962718 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{I|L}{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L};[EP]YT{I|L}{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L};[EP]TY{I|L}{[NV]|[RG]}{I|L}{I|L}{I|L}{I|L};[EP]T[{I|L}A][RV]{I|L}Y{I|L}{I|L};[EP]T[{I|L}A][RV]Y{I|L}{I|L}{I|L};[EP]T[{I|L}A][RV]{I|L}{I|L}Y{I|L};[EP]T[{I|L}A][RV]{I|L}{I|L}{I|L}Y 5.5031;5.3683;5.0571;2.6755;2.1016;1.8156;0.863 +;-;-;-;-;-;- + 249 NaN NaN 162219.5 NaN 15176 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19042 79.144 NaN 174220 35 0 15207 0.261 + 35645 YYIFIPSKF 9 59 589.3186317703555 NaN 0 589.318603515625 PEAK HCD FTMS 0 0 0 19034 76661.3671875 0.5933064839559461 13 -0.36423492431640625 8 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 22.736283301280096 0.1690317064107932 2 {I|L} 1 8 14.732 0 0 1.2521 0 0 737.4118800809073 323.10350532693883 1060.5153854078462 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.2521 + + 8 + NaN NaN 122150 NaN 15177 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19043 79.147 NaN 202830 35 0 17864 0.261 + -1 MLFVESISF 9 70 544.7680071536978 1087.5214613741955 2 544.766845703125 MULTI HCD FTMS 0 0 0 19034 46783.98046875 1 0 0 9 Oxidation (M) _M(Oxidation (M))LFVESISF_ REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1 11.640296217721598 0.25978676193971967 2 {I|L}E{[QS]|[NT]}W{I|L}{M(Oxidation (M))|F} 7 -1 23.945 0 0 2.2018 0 0 166.0917573086212 0 166.0917573086212 0 0.9859945921845537 0 0 0 0 0 0 0 {I|L}E{[QS]|[NT]}W{I|L}{M(Oxidation (M))|F} 2.2018 - 292 + NaN NaN 115874.1 NaN 15178 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19044 79.15 NaN 126230 35 0 8393.5 0.261 + -1 SFMAIVGFVM 10 64 559.2727934132644 NaN 0 559.2897338867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _SFMAIVGFVM(Oxidation (M))_ REV__ENSG00000012174|ENST00000379484|MBTPS2 6.723162845929126 0.3344301934401713 2 Q{I|L} 2 -1 9.464 0 0 0.84762 0 0 165.03074200055363 707.3537081354124 872.3844501359661 0 0 0 0 0 0 0 0 0 Q{I|L} 0.84762 - 18 + NaN NaN 99665 NaN 15179 3863 19034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19046 79.155 NaN 1221900 35 0 399290 0.327 -1 0 55 422.1985239190314 842.3824949048628 2 422.19879150390625 MULTI HCD FTMS 0 0 0 19045 397224.4375 0.3203706759903423 13 -0.35089874267578125 1 NaN NaN 2 [YV]VA{I|L}QA 7 -1 32.629 0 0 3.8734 0 0 0 94.94350499691282 94.94350499691282 18.649794682072105 0 0 0 0 0 1.6989700043360187 0 0.4247425010840047 [YV]VA{I|L}QA 3.8734 - 51 NaN NaN 271664 NaN 15180 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19047 79.16 NaN 1187100 35 0 200450 0.261 -1 0 104 499.28866023260144 996.5627675320029 2 499.2886657714844 MULTI HCD FTMS 0 0 0 19045 284623.40625 0.9407967192164693 1 -0.0296630859375 2 NaN NaN 2 VYVA{I|L}QA 7 -1 80.158 0 0 8.0435 0 0 0 249.12258325748283 249.12258325748283 42.921122892851486 0 0 0 0 2.2302046884880937 1.6989700043360187 0 0.23965182871044374 VYVA{I|L}QA 8.0435 - 1593 + NaN NaN 269999.8 NaN 15181 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19048 79.163 NaN 668180 35 0 129670 0.261 + 3782 EPDSWHWLL 9 81 591.7827484144916 1181.5509438957831 2 591.7827758789062 MULTI HCD FTMS 0 0 0 19045 208034.109375 0.6193288510058722 -1 0.03621673583984375 3 Unmodified _EPDSWHWLL_ ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 24.67388899826682 0.14717941214954053 2 DSWH{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 8 4 31.693 0 0 2.6823 0 0 208.0845204084 0 208.0845204084 0 13.443350238481028 0 0 0 0 0 0.7614393726401688 0 DSWH{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{I|L} 2.6823 - 311 NaN NaN 203750.7 NaN 15182 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19049 79.167 NaN 562210 35 0 91318 0.261 + 32578 WKEKIFII 8 67 538.8287430035074 1075.6429330738147 2 538.8289184570312 MULTI HCD FTMS 0 0 0 19045 212846.84375 0.19548734737943993 7 -0.19365692138671875 4 Unmodified _WKEKIFII_ REV__ENSG00000001461|ENST00000374399|NIPAL3;REV__nc|ENSG00000001461|Q6P499-2|NIPAL3;REV__nc|ENSG00000001461|Q6P499-3|NIPAL3 7.910154910731844 0.5302565402355366 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2996 0 0 910.6007558050632 0 910.6007558050632 0 6.59858596514505 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2996 + + 76 + NaN NaN 176110.5 NaN 15183 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19050 79.17 NaN 205430 35 0 23326 0.261 + 14467 LEVPDMNI 8 44 465.73369609038144 929.4528392475629 2 465.7334899902344 MULTI HCD FTMS 0 0 0 19045 93020.0078125 0.1744748621499589 13 -0.35089874267578125 5 Unmodified _LEVPDMNI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 {NN|[MP]|[D{I|L}]|[EV]}N[DN]{I|L}N 7 4 35.29 0 0 3.7969 0 0 0 128.07412615360388 128.07412615360388 22.675610105906756 0 0 0 0 0.3807196863200844 1.3010299956639813 0 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}N[DN]{I|L}N 3.7969 - 41 NaN NaN 118029.7 NaN 15184 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19051 79.173 NaN 233910 35 0 130370 0.261 -1 0 47 627.3674988627057 626.3602223961057 1 627.3677978515625 MULTI HCD FTMS 0 0 0 19045 90054.2734375 0.8791176750979068 1 -0.0296630859375 6 NaN NaN 2 [Y{M(Oxidation (M))|F}]{I|L} 3 -1 8.072 0 0 1.2887 0 0 0 200.12179401159315 200.12179401159315 6.289232014439374 0 0 0 0 0 0 0 0 [Y{M(Oxidation (M))|F}]{I|L} 1.2887 - 5 NaN NaN 132435.6 NaN 15185 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19052 79.176 NaN 171960 35 0 68951 0.263 + 33576 YIMKKPLV 8 40 496.30406746569616 990.5935819981923 2 496.3040771484375 MULTI HCD FTMS 0 0 0 19045 71902.515625 0.5756265173212288 -6 0.18059539794921875 7 Unmodified _YIMKKPLV_ ENST00000366554.2_1_1:241757348-241757720:-|nuORF 2.8892196856762586 0.5377058178582064 2 [Y{I|L}][R{I|L}]QAV 7 5 28.204 0 0 2.8472 0 0 0 144.0866599613361 144.0866599613361 21.214782044987928 0 0 0 0 0 2 0 0 [Y{I|L}][R{I|L}]QAV 2.8472 - 24 NaN NaN 116874.3 NaN 15186 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19053 79.18 NaN 214690 35 0 12010 0.261 + 33665 YKGLEAFGGL 10 63 527.782301362313 1053.5500497914259 2 527.7823486328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YKGLEAFGGL_ ENSG00000134240|ENST00000369406|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;nc|ENSG00000134240|P54868-3|HMGCS2 20.41453444215458 0.3201613495159799 2 A{M(Oxidation (M))|F}N{I|L} 4 7 38.22 0 0 3.6277 0 0 590.3042656131585 0 590.3042656131585 0 11.308422131034845 0 0 0 1.2302046884880937 0 0 0 A{M(Oxidation (M))|F}N{I|L} 3.6277 - 458 NaN NaN 118087.7 NaN 15187 3864 19045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19055 79.185 NaN 3671700 35 0 575970 0.327 + 32302 VYVAIQAVL 9 87 488.2973634844593 974.5801740357186 2 488.2972412109375 MULTI HCD FTMS 0 0 0 19054 2897136.5 1 0 0 1 Unmodified _VYVAIQAVL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 89.42679046578446 0.004540987215715461 2 [YV]VA{I|L}QAV{I|L} 9 0 + 91.766 0 0 9.416 9.416 90.169 0 0 0 18.015384402724592 7.7815125038364386 7.7815125038364386 2.375729675490547 0 2.3807196863200843 1.5228787452803376 0 0.28872548999643577 + + [YV]VA{I|L}QAV{I|L};[YV]VA{I|L}AGAV{I|L};[YV]VA{I|L}QA{I|L}V;[YV]VA{I|L}AGA{I|L}V;[YV]VA{I|L}AQV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QAV{I|L};{[VA]|[{I|L}G]}[Y{I|L}]VQAV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}AGAV{I|L};[YV]VA{I|L}AQ{I|L}V;{[VA]|[{I|L}G]}[Y{I|L}]VAGAV{I|L} 9.416;9.1722;8.6175;8.3738;7.9889;7.5675;7.3868;7.3237;7.1905;7.143 +;-;-;-;-;-;-;-;-;- + 1099 NaN NaN 479656.8 NaN 15188 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19056 79.189 NaN 2333700 35 0 882920 0.262 -1 CGRGAPHA 8 59 413.19305416906394 824.3715554049279 2 413.1935119628906 MULTI HCD FTMS 0 0 0 19054 1364358.625 0.3304517934226134 14 -0.37357330322265625 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GRGAPHA_ ENST00000463515.1_1_10:103339212-103340251:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}G{I|L} 3 -1 15.705 0 0 1.9051 0 0 155.0940418324654 383.0532625787719 538.1473044112373 0 0 0 0 0 1.055462187404089 0 0 0 {I|L}G{I|L} 1.9051 - 9 + NaN NaN 453710.2 NaN 15189 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19057 79.193 NaN 999890 35 0 137480 0.261 + 13575 KYPENFFLL 9 77 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 19054 877646.375 0.004461318261475881 140 -3.8758010864257812 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 76.82478488871298 0.006879825292024087 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 78.355 0 0 6.6992 6.6992 89.729 0 0 0 7.904849854573683 35.92375704406726 7.904849854573683 9.208187539523749 0 2.524227503252014 0 0 1.7249073637206092 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}E]K{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NPEYK{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}NPEYK{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}E]{I|L}K{I|L} 6.6992;5.9119;5.2528;4.4655;4.292;3.5047;3.1811;2.8644;2.6786;2.5482 +;-;-;-;-;-;-;-;-;- + 1221 NaN NaN 235327.7 NaN 15190 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19058 79.196 NaN 1277800 35 0 176710 0.261 + 20193 NYLDRFLSL 9 95 570.8059667679497 1139.5973806026993 2 570.8062744140625 MULTI HCD FTMS 0 0 0 19054 872949.6875 0.03179555002369324 15 -0.4058380126953125 4 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 155.95374464489888 2.532374632554729E-06 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 112.56 0 0 9.8776 9.8776 96.503 0 0 0 10.683728447993346 10.683728447993346 10.683728447993346 16.276362525516532 0 2.805462187404089 1.6989700043360187 0.25 1.642642683904553 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR{M(Oxidation (M))|F}S{I|L}{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L};{I|L}[YN]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV]QDR{M(Oxidation (M))|F}S{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KQ]{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}S{I|L}{I|L} 9.8776;8.4493;7.4432;6.3818;6.2947;6.0149;5.8297;5.6131;5.4072;4.9535 +;-;-;-;-;-;-;-;-;- + 1372 NaN NaN 297584.3 NaN 15191 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19059 79.199 NaN 462700 35 0 32317 0.261 + 24457 RYLDLFTSF 9 74 581.3004618451429 1160.5863707570857 2 581.3012084960938 MULTI HCD FTMS 0 0 0 19054 252233 0.041672748654589926 20 -0.5467300415039062 5 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 47.594388314883695 0.03493607795751234 2 {I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5 4 57.677 0 0 4.9697 0 0 547.2763860891241 0 547.2763860891241 0 42.728787452803374 0 0 0 1.9247425010840047 0 0.8252574989159953 0 + {I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4.9697 + + 131 NaN NaN 163007.2 NaN 15192 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19060 79.203 NaN 295350 35 0 69014 0.261 + 20100 NYIPRFWTF 9 63 622.3162503270299 1242.6179477208598 2 622.3167724609375 MULTI HCD FTMS 0 0 0 19054 194357.875 0.014956658613920603 53 -1.4605178833007812 6 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 51.629811660486645 0.02929079705179888 2 [YN]{I|L} 3 6 44.749 0 0 3.6012 0 0 0 849.4053696152176 849.4053696152176 11.561734207603749 0 0 0 0 1 1.6989700043360187 0 0.7302046884880937 + [YN]{I|L} 3.6012 + + 85 NaN NaN 140195 NaN 15193 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19061 79.206 NaN 155090 35 0 19810 0.261 + 24267 RYFLPPYTF 9 41 602.3135811492392 1202.6126093652783 2 602.31396484375 MULTI HCD FTMS 0 0 0 19054 65017.30078125 0.6563970363041619 15 -0.4058380126953125 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 2 T{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1594 0 0 936.4833314050813 0 936.4833314050813 0 17.74227503252014 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1594 + + 16 NaN NaN 113961.7 NaN 15194 3865 19054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19063 79.211 NaN 1129900 35 0 188280 0.327 + 13812 KYPSPFFVF 9 101 566.2972883717671 1130.580023810334 2 566.2974853515625 MULTI HCD FTMS 0 0 0 19062 622614.0625 0.00560114110371762 71 -1.9816818237304688 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 88.95385435242217 0.004553379958619559 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 77.655 0 0 6.8686 6.8686 91.977 0 0 0 12.191964632593582 58.01415913489059 12.191964632593582 13.834172022634377 0 2.774227503252014 0 0.75 0.6549471895720984 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]AAS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]YK{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[QA]KY{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KS[YQ]AK{M(Oxidation (M))|F} 6.8686;5.645;4.9434;4.6772;4.2562;4.0352;3.983;3.983;3.858;3.7168 +;-;-;-;-;-;-;-;-;- + 1433 NaN NaN 262214.2 NaN 15195 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19064 79.215 NaN 830190 35 0 155280 0.261 + 1430 AYQLMVDVF 9 78 551.2679374294765 1100.521321925753 2 551.2681274414062 MULTI HCD FTMS 0 0 0 19062 735418.25 0.8037395255661024 -3 0.09209442138671875 2 Oxidation (M) _AYQLM(Oxidation (M))VDVF_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 99.79894945604345 0.0042691968066200965 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F} 9 0 + 83.466 0 0 7.5842 7.5842 93.691 0 0 0 3.65279269351241 53.773043837969325 3.65279269351241 16.070006276765483 0 2.8494850021680094 0 0.3494850021680094 0.6861818737241735 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG]{I|L}{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{M(Oxidation (M))|F}VDV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[WK]C(Carbamidomethyl (C))V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[AG][WK]C(Carbamidomethyl (C))V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[WK][CG]V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[QD]|[EN]|[WG]|[KD]|[RS]}[KC]V{M(Oxidation (M))|F};[DV]{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{NN|[MP]|[D{I|L}]|[EV]}[KS] 7.5842;6.124;5.9696;3.9931;3.1515;3.1515;2.718;0.43985 +;-;-;-;-;-;-;- + 710 NaN NaN 227724.2 NaN 15196 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19065 79.219 NaN 615020 35 0 75376 0.261 + 15748 LPFLEHLEL 9 84 555.8132582310474 1109.6119635288946 2 555.8132934570312 MULTI HCD FTMS 0 0 0 19062 302354.40625 1 0 0 3 Unmodified _LPFLEHLEL_ ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18 92.4914307365334 0.004460681868130716 2 {I|L}P{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L} 9 0 + 89.514 0 0 8.0671 8.0671 91.145 0 0 0 30.20181229336984 8.979400086720375 8.979400086720375 8.979400086720375 0 2.615356566548286 1.5228787452803376 1.6861818737241734 0 + + {I|L}P{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L};{I|L}P{M(Oxidation (M))|F}{I|L}EHE{I|L}{I|L};{I|L}P{M(Oxidation (M))|F}E{I|L}H{I|L}E{I|L};{I|L}P{M(Oxidation (M))|F}E{I|L}HE{I|L}{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}EH{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}P{I|L}EH{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}P{I|L}EHE{I|L}{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}EHE{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L}EH{I|L}E{I|L};{I|L}{M(Oxidation (M))|F}{I|L}PEH{I|L}E{I|L} 8.0671;7.2579;7.1298;6.3205;6.2556;5.9291;5.8855;5.736;5.1378;5.047 +;-;-;-;+;-;-;-;-;- + 1168 + NaN NaN 190998.7 NaN 15197 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19066 79.222 NaN 324130 35 0 40730 0.261 + 32279 VYTVVDEMFL 10 75 616.2994505061508 1230.5843480791016 2 616.2997436523438 MULTI HCD FTMS 0 0 0 19062 114779.1953125 0.030738919697356905 -24 0.6884918212890625 4 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 96.11092074494114 0.0005333825011732249 2 CVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 3 69.981 0 0 5.6868 0 0 260.1733506199203 0 260.1733506199203 0 50.7724163802155 0 0 0 3.079689690656103 0 1.305462187404089 0 CVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 5.6868 - 599 + NaN NaN 139630.8 NaN 15198 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19067 79.226 NaN 438640 35 0 56703 0.261 + 30097 VFVNIQYTL 9 82 548.8058140141887 1095.5970750951774 2 548.8058471679688 MULTI HCD FTMS 0 0 0 19062 122432.671875 0.789829207314252 -2 0.055877685546875 5 Unmodified _VFVNIQYTL_ BACH1-DSCR3|1|fusion;ENSG00000157538|ENST00000309117|VPS26C;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENST00000480452.5_1_21:38605608-38639601:-|nuORF 82.5293158979368 0.005033931517079822 2 [Y{I|L}]K[PA]QYT{I|L} 9 5 + 67.118 0 0 6.1262 6.1262 86.035 0 0 0 3.2696010710206025 49.7099852539377 3.2696010710206025 4.572938755970668 0 1.3252574989159953 2 0 1.055462187404089 [Y{I|L}]K[PA]QYT{I|L};[{M(Oxidation (M))|F}V]VN{I|L}QYT{I|L};[Y{I|L}]K[PA][AG]YT{I|L};[{M(Oxidation (M))|F}V]VN{I|L}[AG]YT{I|L};[{M(Oxidation (M))|F}V]VGG{I|L}QYT{I|L};[{M(Oxidation (M))|F}V]VNA{[VA]|[{I|L}G]}YT{I|L};[{M(Oxidation (M))|F}V]VNG[{I|L}A]YT{I|L};[{M(Oxidation (M))|F}V]VGG{I|L}[AG]YT{I|L};[{M(Oxidation (M))|F}V]VNG{M(Oxidation (M))|F}{[TV]|[{I|L}S]}T{I|L};[{M(Oxidation (M))|F}V]VGGA{[VA]|[{I|L}G]}YT{I|L} 6.1262;5.7088;5.2857;4.8683;4.5208;3.6289;3.3542;3.0684;2.3262;2.1766 -;+;-;-;-;-;-;-;-;- + 1097 NaN NaN 157383.3 NaN 15199 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19068 79.229 NaN 395360 35 0 82288 0.261 + 25472 SFDLAKVLL 9 58 503.3031214259867 1004.5916899187735 2 503.30224609375 MULTI HCD FTMS 0 0 0 19062 106642.1953125 0.8121009831810116 -1 0.026214599609375 6 Unmodified _SFDLAKVLL_ ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A 45.739877483867886 0.03899552410870734 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}AKV{I|L}{I|L} 9 0 + 70.913 0 0 7.0589 7.0589 93.402 0 0 0 15.965781442533356 56.30896262173842 15.965781442533356 21.483259264971153 0 2.1861818737241734 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D{I|L}AKV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}DRRV{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}{[QV]|[N{I|L}]|[RA]|[KV]}V{I|L}{I|L} 7.0589;4.9204;2.7637 +;-;- + 148 NaN NaN 145648.6 NaN 15200 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19069 79.232 NaN 142330 35 0 20260 0.261 + 24268 RYFLPPYTF 9 48 602.3135811492392 1202.6126093652783 2 602.3124389648438 MULTI HCD FTMS 0 0 0 19062 64435.0625 0.65051891651692 16 -0.43195343017578125 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 2 {I|L}TQQT{M(Oxidation (M))|F} 6 6 28.377 0 0 2.3596 0 0 466.232225486525 0 466.232225486525 0 8.940162615404077 0 0 0 0.9247425010840047 0 0 0 {I|L}TQQT{M(Oxidation (M))|F} 2.3596 - 51 NaN NaN 112509.5 NaN 15201 3866 19062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19071 79.237 NaN 643560 35 0 29736 0.327 + 19297 NLVKGPRSS 9 75 479.2775341566531 956.5405153801062 2 479.2774353027344 MULTI HCD FTMS 0 0 0 19070 657331.4375 0.6566531148323782 16 -0.4320220947265625 1 Unmodified _NLVKGPRSS_ ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 6.2057823575117 0.30397260197431997 2 Q 1 9 11.039 0 0 1.1541 0 0 458.27385448346706 367.19705746077716 825.4709119442442 0 0 0 0 0 0.7059771852360797 0 0 0 Q 1.1541 - 48 + NaN NaN 197703.5 NaN 15202 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19072 79.242 NaN 259020 35 0 34892 0.261 + 27354 SYSFFHFML 9 72 597.768337283448 1193.5221216336959 2 597.7679443359375 MULTI HCD FTMS 0 0 0 19070 87410.671875 0.8126717206944724 1 -0.02956390380859375 2 Oxidation (M) _SYSFFHFM(Oxidation (M))L_ ENSG00000111897|ENST00000339697|SERINC1 97.07464715276575 0.004340583992084827 2 SYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 82.986 0 0 6.953 6.953 94.433 0 0 0 63.521913375953645 7.816658315635081 7.816658315635081 40.26593150440647 0 2.110924374808178 2 0.3494850021680094 0 + + SYS{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};SYS{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KP][MT];{[{M(Oxidation (M))|F}C]|[YS]}S[TA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};SYS{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[MT];SYS{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[TA]D{[CT]|[{M(Oxidation (M))|F}G]};{[{M(Oxidation (M))|F}C]|[YS]}S[TA]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.953;3.5793;3.5108;3.3654;2.7857;2.5029;2.1887;1.1808 +;-;-;-;-;-;-;- + 245 + NaN NaN 142733.9 NaN 15203 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19073 79.245 NaN 243160 35 0 76192 0.261 + 32127 VYSFVTPTF 9 36 530.7712679650282 1059.5279829968563 2 530.7714233398438 MULTI HCD FTMS 0 0 0 19070 86387.3515625 0.8144270412397201 -2 0.0523681640625 3 Unmodified _VYSFVTPTF_ ENSG00000130827|ENST00000369682|PLXNA3 14.838274106304384 0.23215694253501695 2 T{M(Oxidation (M))|F} 2 7 17.959 0 0 1.695 0 0 363.18175178681287 445.21015344791255 808.3919052347254 0 0 0 0 0 1 0 0 0 + T{M(Oxidation (M))|F} 1.695 + + 31 + NaN NaN 140254.7 NaN 15204 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19074 79.248 NaN 244740 35 0 80887 0.261 + 33625 YIVEDWQEK 9 49 605.2905095100588 1208.5664660869174 2 606.2999267578125 MULTI HCD FTMS 0 0 0 19070 87154.390625 0.3428360398064613 27 -0.7423477172851562 4 Unmodified _YIVEDWQEK_ ENSG00000159197|ENST00000290310|KCNE2 4.3292370932331545 0.3181982124262546 2 W 1 8 6.9897 0 0 0.57835 0 0 620.8135496824237 398.64707361392817 1019.460623296352 0 0 0 0 0 0 0 0 0 + W 0.57835 + + 4 + NaN NaN 130765.1 NaN 15205 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19075 79.252 NaN 443860 35 0 81897 0.261 + 4916 FAIPLIEKL 9 58 522.3284730449058 1042.6423931566114 2 522.3282470703125 MULTI HCD FTMS 0 0 0 19070 99684.0625 0.026214832288319844 22 -0.608917236328125 5 Unmodified _FAIPLIEKL_ DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21 29.081581746732265 0.1154664336125038 2 {I|L}{[CP]|[EA]} 3 7 19.705 0 0 1.8899 0 0 711.4524835263514 0 711.4524835263514 0 4.220449851406517 0 0 0 0.9247425010840047 0 0 0 {I|L}{[CP]|[EA]} 1.8899 - 36 NaN NaN 157612.2 NaN 15206 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19076 79.255 NaN 132790 35 0 17067 0.261 + 6077 FPEEAVLQQAF 11 51 639.8218371855683 1277.6291214379364 2 639.8222045898438 MULTI HCD FTMS 0 0 0 19070 34868.80078125 0.41216339199856383 6 -0.164031982421875 6 Unmodified _FPEEAVLQQAF_ ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF 15.738622578938676 0.31995127722034494 2 G{I|L}QQA{M(Oxidation (M))|F} 6 6 57.652 0 0 4.5124 0 0 615.29106337715 0 615.29106337715 0 42.19396287239803 0 0 0 1.3494850021680094 0 0 0 G{I|L}QQA{M(Oxidation (M))|F} 4.5124 - 90 NaN NaN 105288.9 NaN 15207 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19077 79.258 NaN 51992 35 0 4513.3 0.264 + 21143 PPLMIPVF 8 46 457.2643882397774 912.5142235463549 2 457.2644958496094 MULTI HCD FTMS 0 0 0 19070 31937.384765625 0.4860906293564603 10 -0.26886749267578125 7 Unmodified _PPLMIPVF_ ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-5|SOX5 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 6.0302 0 0 0.66083 0 0 501.2997898078767 261.1328219049438 762.4326117128205 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 0.66083 + + 2 + NaN NaN 95135.9 NaN 15208 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19078 79.262 NaN 87420 35 0 6116.7 0.261 + 25845 SLWSFNYFF 9 55 404.1889731315254 NaN 0 404.1893615722656 PEAK HCD FTMS 0 0 0 19070 7750.1884765625 0.40833116292624316 -2 0.0523681640625 8 Unmodified _SLWSFNYFF_ ENSG00000179632|ENST00000322428|MAF1 2.735195868890462 0.2819924647978786 2 Q 1 9 5.4846 0 0 0.68016 0 0 172.1583284878571 503.1217440240844 675.2800725119415 0 0 0 0 0 0 0 0 0 Q 0.68016 - 4 + NaN NaN 110655.4 NaN 15209 3867 19070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19080 79.267 NaN 308880 35 0 44914 0.327 -1 0 81 501.29047871913184 500.28320225253185 1 501.29046630859375 MULTI HCD FTMS 0 0 0 19079 142992.34375 0.30323504704768706 17 -0.4647979736328125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 2.6974 0 0 335.2046022542881 0 335.2046022542881 0 8.43318134631147 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.6974 - 16 + NaN NaN 141795.5 NaN 15210 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19081 79.271 NaN 348100 35 0 85728 0.261 + 20101 NYIPRFWTF 9 55 622.3162503270299 1242.6179477208598 2 622.316162109375 MULTI HCD FTMS 0 0 0 19079 125397.1484375 0.00964983971109385 56 -1.5457077026367188 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 45.69961567697781 0.039180348357221985 2 [YN]{I|L}[RP][W{M(Oxidation (M))|F}]T{M(Oxidation (M))|F} 9 0 + 52.202 0 0 4.2009 4.2009 88.834 0 0 0 9.014093602655464 40.964556174699354 9.014093602655464 21.388111427747596 0 1.3807196863200843 1.6989700043360187 0 0.7302046884880937 + + [YN]{I|L}[RP][W{M(Oxidation (M))|F}]T{M(Oxidation (M))|F};[YN]{I|L}[YN][KG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[YR][KG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.2009;2.4797;2.0912 +;-;- + 115 NaN NaN 141115.6 NaN 15211 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19082 79.275 NaN 756190 35 0 139110 0.261 + 4544 EYLIVFPKL 9 75 561.3339523652179 1120.6533517972357 2 561.3344116210938 MULTI HCD FTMS 0 0 0 19079 207489.796875 0.03156459180374043 -8 0.2364654541015625 3 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 85.27202061508552 0.004649858145912257 2 [YE]{I|L}{I|L}V{M(Oxidation (M))|F} 6 3 68.695 0 0 6.1299 0 0 0 353.22108286864903 353.22108286864903 42.67606240177031 0 0 0 0 2 1.6989700043360187 2.1237125054200234 0 + [YE]{I|L}{I|L}V{M(Oxidation (M))|F} 6.1299 + + 589 NaN NaN 206865.1 NaN 15212 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19083 79.278 NaN 184030 35 0 10734 0.261 -1 0 70 509.8037904894488 1017.5930280456976 2 509.8036804199219 MULTI HCD FTMS 0 0 0 19079 84192.859375 0.19676682439145662 17 -0.4647979736328125 4 NaN NaN 2 T{I|L} 2 -1 10.969 0 0 1.0779 0 0 218.21483152494608 582.2226046197874 800.4374361447335 0 0 0 0 0 0 0 0 0 T{I|L} 1.0779 - 102 + NaN NaN 135148.9 NaN 15213 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19084 79.281 NaN 123480 35 0 9881.3 0.261 + 11984 KFWDYLQEF 9 42 638.3054580970203 1274.5963632608405 2 638.80810546875 MULTI HCD FTMS 0 0 0 19079 47191.8515625 1 0 0 5 Unmodified _KFWDYLQEF_ ENSG00000076258|ENST00000367749|FMO4;ENST00000462992.1_1_1:171292253-171302174:+|nuORF;ENST00000475780.5_1_1:171285408-171306524:+|nuORF 37.771325159832564 0.07557564330356273 2 DY{I|L}QE{M(Oxidation (M))|F} 6 3 62.128 0 0 4.8743 0 0 461.24125868965 0 461.24125868965 0 51.67017533604145 0 0 0 2.0356668758921828 0 0 0 + DY{I|L}QE{M(Oxidation (M))|F} 4.8743 + + 120 NaN NaN 111975.2 NaN 15214 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19085 79.285 NaN 108960 35 0 31234 0.263 -1 IFLTICMM 8 46 514.7531435308916 1027.4917341285832 2 514.7528686523438 MULTI HCD FTMS 0 0 0 19079 93820.234375 0.7085130429282918 3 -0.082061767578125 6 Carbamidomethyl (C) _IFLTIC(Carbamidomethyl (C))MM_ TLCD1|p.R154C|1|0.4|ENSG00000160606|chr17:28724794-28724794|G/A|missense_variant 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 100010.6 NaN 15215 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19086 79.288 NaN 269390 35 0 23347 0.261 + 11388 IYPDSFTVL 9 67 527.7766253954015 1053.538697857603 2 528.2763061523438 MULTI HCD FTMS 0 0 0 19079 31645.16015625 0.1702782696456357 -7 0.203582763671875 7 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 61.357469665136826 0.01568246967499496 2 [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L} 9 0 + 59.56 0 0 5.6534 5.6534 91.493 0 0 0 16.028318269781188 40.74803103377875 16.028318269781188 27.245462655597088 0 1.774227503252014 1.3010299956639813 0.4247425010840047 0 + + [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L};[Y{I|L}][DP]S{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[Y{I|L}][DP]S[{I|L}A]Y{I|L} 5.6534;3.0673;3.0673 +;-;- + 158 NaN NaN 139188 NaN 15216 3868 19079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19088 79.293 NaN 705140 35 0 75199 0.327 + 34430 YPETLGRLLIL 11 84 644.3873405634052 1286.7601281936104 2 644.38720703125 MULTI HCD FTMS 0 0 0 19087 487852.125 0.9961462290249605 2 -0.05579376220703125 1 Unmodified _YPETLGRLLIL_ ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 101.5434397834973 0.020855853890424585 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{I|L}GR{I|L}{I|L}{I|L}{I|L} 11 0 + 98.977 0 0 7.6919 7.6919 93.823 0 0 0 15.713337517843655 16.57577319177794 15.713337517843655 15.713337517843655 0 2.3737125054200234 1.3979400086720375 1.4049471895720984 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{I|L}GR{I|L}{I|L}{I|L}{I|L};[EP]YT{I|L}GR{I|L}{I|L}{I|L}{I|L};[EP]TY{I|L}GR{I|L}{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q[TA][KQ]{I|L}{I|L}{I|L}{I|L} 7.6919;6.4708;6.1342;3.7056 +;-;-;- + 321 NaN NaN 195186.2 NaN 15217 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19089 79.297 NaN 696770 35 0 225190 0.264 + 8740 HHGAGAFF 8 43 422.1985239190314 842.3824949048628 2 422.19873046875 MULTI HCD FTMS 0 0 0 19087 425849.34375 0.3434573234866275 18 -0.49747467041015625 2 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.8382 0 0 677.3038033538847 0 677.3038033538847 0 15.484550065040281 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8382 + + 1 + NaN NaN 193585.8 NaN 15218 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19090 79.301 NaN 750610 35 0 178480 0.261 + 3452 EFSSALFEL 9 66 521.7583074573846 1041.502061981569 2 521.7582397460938 MULTI HCD FTMS 0 0 0 19087 271272.25 0.4482146925117316 -6 0.17407989501953125 3 Unmodified _EFSSALFEL_ REV__ENSG00000241945|ENST00000291576|PWP2 43.85829265575387 0.04763305254408404 2 {M(Oxidation (M))|F}E{I|L} 3 -1 30.802 0 0 2.9575 0 0 634.2959369091608 0 634.2959369091608 0 23.812281309285623 0 0 0 0.7614393726401688 0 0 0 {M(Oxidation (M))|F}E{I|L} 2.9575 + + 57 NaN NaN 205096.4 NaN 15219 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19091 79.304 NaN 418390 35 0 40192 0.261 -1 YIQCLYAF 8 68 539.2572096755251 1076.4998664178502 2 539.2678833007812 MULTI HCD FTMS 0 0 0 19087 12811.3798828125 0.41716916308485663 -5 0.1378631591796875 4 Carbamidomethyl (C) _YIQC(Carbamidomethyl (C))LYAF_ ARID1A|p.G1298Efs*15|1|0.07|ENSG00000117713|chr1:26773605-26773633|GGAAACATGAGCACTGGGGCCCCACAGCC/-|frameshift_variant;ARID1A|p.V1271Efs*21|1|0.06|ENSG00000117713|chr1:26773433-26773434|-/AGGAAATG|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A 6.354104778181461 0.5325651638111438 2 {I|L}{I|L} 2 -1 19.464 0 0 1.8081 0 0 832.3414914656122 0 832.3414914656122 0 5.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.8081 - 22 NaN NaN 156507.4 NaN 15220 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19092 79.308 NaN 288240 35 0 37232 0.261 -1 LSCCIFDII 9 53 542.2636121833826 NaN 0 542.2733154296875 PEAK HCD FTMS 0 0 0 19087 13418.5263671875 1 0 0 5 Carbamidomethyl (C) _LSC(Carbamidomethyl (C))CIFDII_ ENST00000587591.5_1_18:43753619-43795813:+|nuORF 16.942295170755138 0.2079222001251384 2 {I|L}SV 3 -1 23.5 0 0 2.1709 0 0 131.07624303819324 649.2292285505584 780.3054715887517 0 0 0 0 0 0 0 0.8807196863200843 0 {I|L}SV 2.1709 - 198 + NaN NaN 131411.6 NaN 15221 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19093 79.311 NaN 486780 35 0 99362 0.261 + 10110 IFIDPGYQTF 10 61 600.8004028562299 1199.5862527792597 2 600.800537109375 MULTI HCD FTMS 0 0 0 19087 191181.421875 0.42997508693778075 -3 0.0819854736328125 6 Unmodified _IFIDPGYQTF_ ENSG00000121741|ENST00000610343|ZMYM2 59.368380827593164 0.04371880213842136 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]YQT{M(Oxidation (M))|F} 10 0 + 53.461 0 0 4.4566 4.4566 85.417 0 0 0 3.679767852945943 42.49159686636801 3.679767852945943 9.164539485499255 0 1.805462187404089 0 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]YQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D[PG]Y[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[PG]YQT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}[PG]Y[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RK]HHT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D[RK]{[{M(Oxidation (M))|F}D]|MM}{I|L}{M(Oxidation (M))|F} 4.4566;3.6926;3.3911;2.6271;1.8056;1.6621;1.2372 +;-;-;-;-;-;- + 336 NaN NaN 180316.3 NaN 15222 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19094 79.314 NaN 335840 35 0 41805 0.261 + 17485 LYTALQQYF 9 54 573.795032808335 1145.57551268347 2 573.7952270507812 MULTI HCD FTMS 0 0 0 19087 171397.859375 0.48873567292795783 -4 0.1082000732421875 7 Unmodified _LYTALQQYF_ ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;nc|ENSG00000089053|Q9UJX4-3|ANAPC5 88.95385435242217 0.004553379958619559 2 [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F} 9 0 + 70.956 0 0 6.1939 6.1939 88.861 0 0 0 4.762036441594191 59.26120488461861 4.762036441594191 9.208187539523749 0 2.742992819099939 0 1.0387254899964358 0.3807196863200844 + + [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}Q[AG]Y{M(Oxidation (M))|F};[YQ][QA]T{I|L}{I|L}Y{M(Oxidation (M))|F} 6.1939;5.3901;2.1784 +;-;- + 240 NaN NaN 135952.1 NaN 15223 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19095 79.318 NaN 135950 35 0 13170 0.261 + 35646 YYIFIPSKF 9 46 589.3186317703555 NaN 0 589.3184204101562 PEAK HCD FTMS 0 0 0 19087 52537.6796875 0.4066056627239088 19 -0.5136184692382812 8 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 27.628801355627647 0.1361920736132224 2 {I|L} 1 8 15.485 0 0 1.316 0 0 326.1280917258237 734.386791690102 1060.5148834159256 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.316 + + 7 + NaN NaN 121379.6 NaN 15224 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19096 79.321 NaN 356630 35 0 42670 0.261 + 11389 IYPDSFTVL 9 65 527.7766253954015 1053.538697857603 2 527.7767333984375 MULTI HCD FTMS 0 0 0 19087 103880.9296875 0.36970510249555605 -9 0.26273345947265625 9 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 78.14939416004806 0.006451203201226903 2 [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L} 9 0 + 76.621 0 0 7.2728 7.2728 94.669 0 0 0 19.638787285696964 49.80327215271494 19.638787285696964 33.05584714187489 0 2.024227503252014 1.5228787452803376 1.1307196863200843 0 + + [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L};[Y{I|L}][DP]S[{I|L}A]Y{I|L} 7.2728;4.1352 +;- + 244 NaN NaN 153286.5 NaN 15225 3869 19087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19098 79.326 NaN 1369000 35 0 184560 0.326 + 32303 VYVAIQAVL 9 97 488.2973634844593 974.5801740357186 2 488.29736328125 MULTI HCD FTMS 0 0 0 19097 755998.125 0.26094667096286284 5 -0.1277313232421875 1 Unmodified _VYVAIQAVL_ ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 85.35673624503755 0.00464763827098139 2 [YV]VA{I|L}QAV{I|L} 9 0 + 78.66 0 0 8.0712 8.0712 92.141 0 0 0 9.877407239188102 9.877407239188102 9.877407239188102 9.208187539523749 0 2.56295299324845 1.0969100130080565 0 0 + + [YV]VA{I|L}QAV{I|L};[YV]VA{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}QAV{I|L};{[VA]|[{I|L}G]}[YV]{I|L}[AG]AV{I|L};{[VA]|[{I|L}G]}[Y{I|L}]VQAV{I|L};[YV][{I|L}A]VQAV{I|L};{[VA]|[{I|L}G]}[Y{I|L}]V[AG]AV{I|L};[YV]VA{I|L}{[VA]|[{I|L}G]}Q{I|L};{[VA]|[{I|L}G]}Q{I|L}[YV]AV{I|L};[YV][{I|L}A]V[AG]AV{I|L} 8.0712;7.1263;6.8823;5.9375;5.7293;5.2796;4.7845;4.6053;4.4486;4.3348 +;-;-;-;-;-;-;-;-;- + 684 NaN NaN 302741 NaN 15226 3870 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19099 79.33 NaN 362750 35 0 55962 0.261 + 3783 EPDSWHWLL 9 77 591.7827484144916 1181.5509438957831 2 591.7828369140625 MULTI HCD FTMS 0 0 0 19097 152455.296875 0.4538677052865043 5 -0.1277313232421875 2 Unmodified _EPDSWHWLL_ ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 19.438996006549623 0.19240772610395238 2 MPE{I|L} 4 7 22.792 0 0 1.929 0 0 693.3132191388687 0 693.3132191388687 0 5 0 0 0 0 0 0.5 0 MPE{I|L} 1.929 - 329 NaN NaN 143963.7 NaN 15227 3870 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19100 79.334 NaN 476210 35 0 33385 0.261 + 18648 MYGLFQTSF 9 87 555.2517833223443 1108.4890137114885 2 555.252197265625 MULTI HCD FTMS 0 0 0 19097 256028.0625 1 0 0 3 Oxidation (M) _M(Oxidation (M))YGLFQTSF_ ENSG00000077147|ENST00000371142|TM9SF3 88.90359156742426 0.00455469703666567 2 [Y{M(Oxidation (M))|F}]G{I|L}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F} 9 0 + 68.81 0 0 6.2076 6.2076 84.721 0 0 0 1.0230504489476289 10.484798261682059 1.0230504489476289 1.0230504489476289 0 1.9247425010840047 0 0.6989700043360187 0 + + [Y{M(Oxidation (M))|F}]G{I|L}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]G{I|L}{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{[YC]|[HE]}TS{M(Oxidation (M))|F};[HN]{[ET]|[MV]}HHTS{M(Oxidation (M))|F};[HN]{[ET]|[MV]}HHST{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[W{M(Oxidation (M))|F}]{M(Oxidation (M))|F} 6.2076;6.1153;5.3769;5.2846;4.5837;3.9289;2.4027;2.1553;0.87239 +;-;-;-;-;-;-;-;- + 1318 NaN NaN 160275.7 NaN 15228 3870 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19101 79.337 NaN 218650 35 0 12919 0.261 + 16190 LPVLESFKVSF 11 62 633.3607527298672 1264.7069525265342 2 633.3604736328125 MULTI HCD FTMS 0 0 0 19097 100066.7734375 0.5886329482504911 -2 0.0591278076171875 4 Unmodified _LPVLESFKVSF_ ENSG00000118137|ENST00000236850|APOA1 57.2037768669896 0.051836674997482644 2 {I|L}PV{I|L}C(Carbamidomethyl (C))M{I|L}E 8 7 59.15 0 0 4.6769 0 0 0 306.18161951236567 306.18161951236567 19.90926274548464 0 0 0 0 0.8807196863200843 0 0.4247425010840047 0 {I|L}PV{I|L}C(Carbamidomethyl (C))M{I|L}E 4.6769 - 118 + NaN NaN 131701.5 NaN 15229 3870 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19102 79.34 NaN 155360 35 0 68251 0.263 + 33577 YIMKKPLV 8 35 496.30406746569616 990.5935819981923 2 496.304443359375 MULTI HCD FTMS 0 0 0 19097 124911.75 1 0 0 5 Unmodified _YIMKKPLV_ ENST00000366554.2_1_1:241757348-241757720:-|nuORF 0.7936320650641473 0.540814922690045 2 NA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 6 9.6927 0 0 0.97848 0 0 527.3838174491674 0 527.3838174491674 0 4.208187539523751 0 0 0 0 0 0 0 NA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 0.97848 - 16 + NaN NaN 111768.8 NaN 15230 3870 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19103 79.344 NaN 476650 35 0 37642 0.261 + 17507 LYTILTTQL 9 93 533.3132584165721 1064.6119638999442 2 533.3133544921875 MULTI HCD FTMS 0 0 0 19097 132937.140625 0.9203071160116888 -4 0.11484527587890625 6 Unmodified _LYTILTTQL_ ENSG00000128654|ENST00000249442|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;nc|ENSG00000128654|O75431-2|MTX2 75.76082778847304 0.0072241045649327805 2 {I|L}TTQ{I|L} 5 4 41.484 0 0 3.8966 0 0 490.27918774781824 0 490.27918774781824 0 21.47894779085682 0 0 0 1.75 0 0.6861818737241735 0 + {I|L}TTQ{I|L} 3.8966 + + 414 NaN NaN 161798.8 NaN 15231 3870 19097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19105 79.349 NaN 2918300 35 0 452820 0.327 + 29883 VFDIHVIDF 9 119 552.7899350185448 1103.5653171038896 2 552.7900390625 MULTI HCD FTMS 0 0 0 19104 1846586.5 0.7139807035116036 -3 0.082061767578125 1 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 144.35026110057638 1.4798765981150827E-05 2 V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F} 9 0 + 111.35 0 0 10.09 10.09 92.711 0 0 0 69.78433160537556 16.478174818886373 16.478174818886373 7.597046968434142 0 3.079689690656103 0 2.321333751784366 0 + + V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F};{M(Oxidation (M))|F}VD{I|L}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HVEV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]EVHV{I|L}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}VHV{I|L}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}HV{M(Oxidation (M))|F}V{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}H{I|L}VD{M(Oxidation (M))|F} 10.09;9.402;7.2084;6.9588;6.0063;5.96;5.9588;5.9137;5.8323;5.8052 +;-;+;-;-;-;-;-;-;- + 3433 + NaN NaN 533281.1 NaN 15232 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19106 79.353 NaN 1417800 35 0 527750 0.263 + 8896 HPCGGAQR 8 60 413.19305416906394 824.3715554049279 2 413.1934814453125 MULTI HCD FTMS 0 0 0 19104 632187.625 0.15311775850783557 20 -0.5521087646484375 2 Unmodified _HPCGGAQR_ REV__ENST00000544123.5_2_18:5406782-5406863:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 6.5938 0 0 0.79986 0 0 155.09337044574664 553.1734102838499 708.2667807295966 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 0.79986 - 3 + NaN NaN 300125.2 NaN 15233 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19107 79.357 NaN 1468200 35 0 372860 0.261 + 7816 FYPYGLQTF 9 83 568.2756770173537 1134.5368011015073 2 568.2767333984375 MULTI HCD FTMS 0 0 0 19104 760274.0625 0.9575280029112212 1 -0.02956390380859375 3 Unmodified _FYPYGLQTF_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant 88.95385435242217 0.004553379958619559 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[YG]{I|L}QT{M(Oxidation (M))|F} 9 2 + 52.188 0 0 4.6 4.6 82.606 0 0 0 0.10476532493569835 26.297568461734855 0.10476532493569835 1.9762124636434208 0 1.586696871556164 1.2218487496163564 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[YG]{I|L}QT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]P[YG]{I|L}QT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}[YG]{I|L}[AG]T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]P[YG]{I|L}[AG]T{M(Oxidation (M))|F};[NP]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[TP]QT{M(Oxidation (M))|F};[NP]{[TV]|[{I|L}S]}M[TP]QT{M(Oxidation (M))|F};[QT]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{M(Oxidation (M))|F};[QT]{M(Oxidation (M))|F}[HN][WR]{M(Oxidation (M))|F};[NP]{M(Oxidation (M))|F}[PS][TP]QT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}AA[VS]AY{M(Oxidation (M))|F} 4.6;4.4258;3.7883;3.6141;2.0193;1.9805;1.8602;1.6248;1.4436;1.4207 -;+;-;-;-;-;-;-;-;- + 792 NaN NaN 314961.4 NaN 15234 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19108 79.36 NaN 842090 35 0 104020 0.261 + 13576 KYPENFFLL 9 81 585.8131605635726 1169.6117681939452 2 585.8134155273438 MULTI HCD FTMS 0 0 0 19104 547797.4375 0.002784605259160835 146 -4.056243896484375 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 73.815 0 0 6.3111 6.3111 88.426 0 0 0 10.010139041535666 58.989335029034265 10.010139041535666 9.208187539523735 0 2.4049471895720984 0 0 1.089136830878453 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}E]K{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[{M(Oxidation (M))|F}E]{I|L}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EK{I|L} 6.3111;5.5238;3.6414;3.1473;3.1468;2.462;2.3638;2.3596;2.1022;2.0235 +;-;-;-;-;-;-;-;-;- + 1322 NaN NaN 228199.4 NaN 15235 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19109 79.363 NaN 908930 35 0 273810 0.261 + 15819 LPIDGANDLF 10 64 537.7770795744138 1073.5396062156276 2 537.7772216796875 MULTI HCD FTMS 0 0 0 19104 597823.6875 0.6682965624558087 -5 0.13777923583984375 5 Unmodified _LPIDGANDLF_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF;nc|ENSG00000198408|O60502-4|OGA 79.59630418116434 0.006214567534389808 2 DQND{I|L}{M(Oxidation (M))|F} 6 5 63.581 0 0 5.9226 0 0 323.22028877948543 0 323.22028877948543 0 39.76911912748342 0 0 0 1.9731975075880328 0 0.6861818737241735 0.4247425010840047 DQND{I|L}{M(Oxidation (M))|F} 5.9226 - 164 NaN NaN 233380.2 NaN 15236 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19110 79.367 NaN 1246100 35 0 220200 0.263 + 25145 SAIGLSIAL 9 48 422.7605381480444 843.5065233628889 2 422.7606506347656 MULTI HCD FTMS 0 0 0 19104 212959.109375 0.5926345882768528 1 -0.02956390380859375 6 Unmodified _SAIGLSIAL_ CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;ENST00000586392.1_1_19:34884173-34884275:+|nuORF;GPI-EYS|1|fusion;GPI-EYS|2|fusion;nc|ENSG00000105220|P06744-2|GPI 78.14939416004806 0.006451203201226903 2 G{I|L}S{I|L}A{I|L} 6 3 54.123 0 0 6.4164 0 0 271.1524830548844 0 271.1524830548844 0 48.436172372683046 0 0 0 2.1989700043360187 0 0.805462187404089 0 + G{I|L}S{I|L}A{I|L} 6.4164 + + 73 NaN NaN 282338.4 NaN 15237 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19111 79.37 NaN 841480 35 0 113620 0.261 + 20194 NYLDRFLSL 9 89 570.8059667679497 1139.5973806026993 2 571.3075561523438 MULTI HCD FTMS 0 0 0 19104 134197.078125 0.007905066806043137 21 -0.5782699584960938 7 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 94.90867108109511 0.004397340885530348 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 105.19 0 0 9.2302 9.2302 90.691 0 0 0 4.049471895720984 4.049471895720984 4.049471895720984 4.049471895720984 0 2.8494850021680094 1.6989700043360187 0.3054621874040891 0.805462187404089 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};NY{I|L}DR{M(Oxidation (M))|F}TV{I|L};[YN]{I|L}DR{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}TV{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}TV{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L} 9.2302;8.8749;7.3794;5.845;5.3362;5.2608;5.0117;4.7522;4.6429;4.5282 +;+;-;-;-;-;-;-;-;- + 1350 NaN NaN 237380.3 NaN 15238 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19112 79.373 NaN 428540 35 0 27249 0.261 + 24458 RYLDLFTSF 9 67 581.3004618451429 1160.5863707570857 2 581.3015747070312 MULTI HCD FTMS 0 0 0 19104 137891.75 0.022781825690102207 26 -0.72259521484375 8 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 41.95555342248728 0.056367691549927025 2 V{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6 4 60.935 0 0 5.2504 0 0 448.210252830275 0 448.210252830275 0 52.08342832424712 0 0 0 2 0 0.805462187404089 0 V{I|L}{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.2504 - 196 NaN NaN 170417.6 NaN 15239 3871 19104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19114 79.378 NaN 624890 35 0 27784 0.327 + 20764 PGKRQTSIA 9 82 479.2775341566531 956.5405153801062 2 479.2774353027344 MULTI HCD FTMS 0 0 0 19113 558437.875 0.5578616039631061 21 -0.5749359130859375 1 Unmodified _PGKRQTSIA_ REV__ENST00000438423.6_1_15:57579850-57580075:+|nuORF 3.5964929083625545 0.32375295897743744 2 Q 1 -1 11.281 0 0 1.1794 0 0 458.27398393575277 367.1967923758111 825.4707763115639 0 0 0 0 0 0.7302046884880937 0 0 0 Q 1.1794 + + 28 + NaN NaN 196123.5 NaN 15240 3872 19113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19115 79.383 NaN 725190 35 0 104020 0.261 + 20195 NYLDRFLSL 9 89 570.8059667679497 1139.5973806026993 2 570.80615234375 MULTI HCD FTMS 0 0 0 19113 449430.59375 0.016369663831005472 22 -0.6011581420898438 2 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 100.7086487251713 0.004245359191255521 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 104.01 0 0 9.127 9.127 97.173 0 0 0 14.630616633331854 14.630616633331854 14.630616633331854 29.648167490521175 0 2.7302046884880937 1.6989700043360187 0.2614393726401688 1.0941876774005248 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YV]QDR{M(Oxidation (M))|F}{I|L}S{I|L};[YV][AG]DR{M(Oxidation (M))|F}{I|L}S{I|L};{[MS]|[{M(Oxidation (M))|F}A]}[TA]DR{M(Oxidation (M))|F}{I|L}S{I|L};[{M(Oxidation (M))|F}V][SG]DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}D{I|L};[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}R{M(Oxidation (M))|F}{I|L}S{I|L};[YV]Q[Y{I|L}]{[QV]|[N{I|L}]|[RA]|[KV]}D{I|L} 9.127;6.5254;5.7174;4.7328;4.4775;4.3655;3.1315;1.7639 +;-;-;-;-;-;-;- + 902 NaN NaN 201898.7 NaN 15241 3872 19113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19116 79.386 NaN 279700 35 0 40565 0.261 + 32280 VYTVVDEMFL 10 57 616.2994505061508 1230.5843480791016 2 616.2997436523438 MULTI HCD FTMS 0 0 0 19113 127806.0078125 0.03422761938949019 -18 0.5086288452148438 3 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 126.56589448801843 2.6506179816573442E-05 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 91.706 0 0 7.4522 7.4522 93.099 0 0 0 4.884381005764311 84.71639407645036 4.884381005764311 14.049471895720984 0 2.5994850021680094 0 1.5356668758921828 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TV[MT]EE{M(Oxidation (M))|F}{I|L} 7.4522;6.3105;6.1882;5.5985;5.387;3.9637 +;-;-;-;-;- + 535 NaN NaN 141788.1 NaN 15242 3872 19113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19117 79.39 NaN 202630 35 0 49307 0.261 + 20102 NYIPRFWTF 9 55 622.3162503270299 1242.6179477208598 2 622.3162841796875 MULTI HCD FTMS 0 0 0 19113 112083.546875 0.008625301891403899 60 -1.6672515869140625 4 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 32.78568957990786 0.09846250359632436 2 [YN]{I|L} 3 6 40.942 0 0 3.2948 0 0 0 849.4052999761675 849.4052999761675 18.735899786366232 0 0 0 0 1 1.6989700043360187 0 0.3494850021680094 + [YN]{I|L} 3.2948 + + 51 NaN NaN 127822.5 NaN 15243 3872 19113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19118 79.393 NaN 497490 35 0 81601 0.261 -1 LPLHEHGMF 9 81 548.7675777501196 1095.520602567039 2 548.7679443359375 MULTI HCD FTMS 0 0 0 19113 83751.4921875 0.6425063606696739 -3 0.085357666015625 5 Oxidation (M) _LPLHEHGM(Oxidation (M))F_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|181|2|anti-sense 28.486842064014134 0.11819662193267319 2 {I|L}P{I|L}D{[{M(Oxidation (M))|F}C]|[YS]}E{I|L}{M(Oxidation (M))|F} 9 -1 + 76.181 0 0 6.9539 6.9539 94.473 0 0 0 37.078343878162336 13.032731160692137 13.032731160692137 41.05774396488271 0 2.110924374808178 1.5228787452803376 0 0 {I|L}P{I|L}D{[{M(Oxidation (M))|F}C]|[YS]}E{I|L}{M(Oxidation (M))|F};[Y{I|L}]K[PA]QDD{M(Oxidation (M))|F};[{I|L}P]{I|L}D{[WN]|[YH]}[HC]V;[Y{I|L}]K{[DS]|[MA]|[CV]|TT}GREE 6.9539;3.2061;2.6714;1.5572 -;-;-;- 302 + NaN NaN 169748.1 NaN 15244 3872 19113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19119 79.396 NaN 384930 35 0 78390 0.261 + 5238 FFDPSLLHL 9 61 544.7926357341055 1087.5707185350109 2 544.792724609375 MULTI HCD FTMS 0 0 0 19113 115462.3125 0.37708586290067353 -4 0.11162567138671875 6 Unmodified _FFDPSLLHL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 32.30548876998284 0.10066689432505688 2 D{M(Oxidation (M))|F}E 3 8 30.674 0 0 2.8204 0 0 678.4060285060498 0 678.4060285060498 0 18.79493455131808 0 0 0 0.9247425010840047 0 0 0 D{M(Oxidation (M))|F}E 2.8204 - 77 NaN NaN 150155.6 NaN 15245 3872 19113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19121 79.401 NaN 820520 35 0 280430 0.327 + 17311 LYPQFMFHL 9 68 598.3021471797576 1194.5897414263152 2 598.3025512695312 MULTI HCD FTMS 0 0 0 19120 349613.1875 0.11647802447262241 -5 0.13446807861328125 1 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 81.61307344734483 0.005330412723537057 2 {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 91.609 0 0 7.6687 7.6687 93.151 0 0 0 76.57190309977331 9.009461452434238 9.009461452434238 12.703037561203843 0 2.4291746928241125 2 0 0.3494850021680094 + + {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]{M(Oxidation (M))|F}YM{M(Oxidation (M))|F}H{I|L};[QP]{I|L}Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}H{I|L} 7.6687;6.6053;5.7173;4.2807;3.7361;3.4356;2.6732;1.4601 +;-;+;-;-;-;-;- + 680 + NaN NaN 212367.3 NaN 15246 3873 19120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19122 79.406 NaN 314970 35 0 47241 0.262 -1 0 68 501.29047871913184 500.28320225253185 1 501.2905578613281 MULTI HCD FTMS 0 0 0 19120 182414.9375 0.3868361109719442 22 -0.6111373901367188 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 2.5514 0 0 335.2046785482334 0 335.2046785482334 0 10.54572234712534 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.5514 - 9 + NaN NaN 129674.9 NaN 15247 3873 19120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19123 79.409 NaN 232640 35 0 60812 0.261 + 20103 NYIPRFWTF 9 59 622.3162503270299 1242.6179477208598 2 622.3167724609375 MULTI HCD FTMS 0 0 0 19120 129630.3984375 0.009975606161655113 61 -1.7029571533203125 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 45.69961567697781 0.039180348357221985 2 [YN]{I|L} 3 6 45.062 0 0 3.6263 0 0 0 849.4050930838838 849.4050930838838 18.066884185923655 0 0 0 0 1 1.6989700043360187 0 0.7614393726401688 + [YN]{I|L} 3.6263 + + 54 NaN NaN 126267.1 NaN 15248 3873 19120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19124 79.412 NaN 215210 35 0 69618 0.261 + 17566 LYVLYDDATH 10 42 605.2905095100588 1208.5664660869174 2 606.30078125 MULTI HCD FTMS 0 0 0 19120 69209.234375 0.2722458347882254 33 -0.9165191650390625 4 Unmodified _LYVLYDDATH_ ENST00000521903.5_1_8:124359502-124368686:-|nuORF 4.3292370932331545 0.45238836448149167 2 E 1 10 3.0989 0 0 0.25641 0 0 164.01783435039243 912.4702852838499 1076.4881196342424 0 0 0 0 0 0 0 0 0 E 0.25641 - 4 + NaN NaN 134758.2 NaN 15249 3873 19120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19125 79.416 NaN 174650 35 0 12894 0.261 -1 LFLLRTSTCL 10 63 612.3438815089628 NaN 0 612.3319702148438 PEAK HCD FTMS 0 0 0 19120 15951.896484375 1 0 0 5 Carbamidomethyl (C) _LFLLRTSTC(Carbamidomethyl (C))L_ ENST00000379205.4_1_4:159590545-159590674:-|nuORF 4.3292370932331545 0.3364790620948225 2 {I|L}D 2 -1 14.464 0 0 1.183 0 0 261.2602758186478 730.2819840533328 991.5422598719806 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L}D 1.183 - 5 + NaN NaN 121660.3 NaN 15250 3873 19120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19126 79.419 NaN 68061 35 0 7066.9 0.264 + 11096 IYHSGASGN 9 38 453.2095303350333 NaN 0 453.2098693847656 PEAK HCD FTMS 0 0 0 19120 28104.04296875 0.6244929263799629 -9 0.246063232421875 6 Unmodified _IYHSGASGN_ REV__ENSG00000044090|ENST00000265348|CUL7;REV__nc|ENSG00000044090|Q14999-2|CUL7 4.75600775471527 0.27219989241163056 2 W 1 -1 3.0989 0 0 0.34265 0 0 470.1789045647948 245.12973962955314 715.308644194348 0 0 0 0 0 0 0 0 0 W 0.34265 - 1 + NaN NaN 112281.8 NaN 15251 3873 19120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19128 79.424 NaN 7996700 35 0 1611400 0.327 + 4545 EYLIVFPKL 9 79 561.3339523652179 1120.6533517972357 2 561.3341674804688 MULTI HCD FTMS 0 0 0 19127 4445523 0.6762796097085897 -2 0.0457305908203125 1 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 139.13845188893973 5.0762478717762276E-05 2 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 103.28 0 0 9.2158 9.2158 94.571 0 0 0 22.351453248366795 14.973024840566467 14.973024840566467 10.255762612236907 0 2.8494850021680094 1.5228787452803376 3.004432191740108 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}V{I|L}{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}V{M(Oxidation (M))|F}{I|L}PK{I|L};[YE]V{I|L}{I|L}{M(Oxidation (M))|F}PK{I|L};[Y{I|L}]E{I|L}V{M(Oxidation (M))|F}PK{I|L};[YE]V{I|L}{M(Oxidation (M))|F}{I|L}PK{I|L};{I|L}{I|L}[YE]V{M(Oxidation (M))|F}PK{I|L};[Y{I|L}]EV{I|L}{M(Oxidation (M))|F}PK{I|L};{I|L}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}PK{I|L};[Y{I|L}]EV{M(Oxidation (M))|F}{I|L}PK{I|L} 9.2158;8.3006;7.4083;7.0953;6.2866;6.203;5.73;5.3714;4.8149;4.4791 +;-;-;-;-;-;-;-;-;- + 1150 NaN NaN 990027.8 NaN 15252 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19129 79.428 NaN 526270 35 0 54716 0.261 + 20624 PFALLMALV 9 78 487.79076122415506 973.5669695151101 2 487.790771484375 MULTI HCD FTMS 0 0 0 19127 247822.28125 0.2785843681063629 23 -0.6473007202148438 2 Unmodified _PFALLMALV_ ENSG00000120235|ENST00000380210|IFNA6;ENSG00000233816|ENST00000610660|IFNA13 9.347437153973935 0.2795965555214564 2 VAM{I|L}QA[{I|L}V] 8 4 19.051 0 0 1.9568 0 0 130.08193641139763 0 130.08193641139763 0 12.597587459137717 0 0 0 0 0 0 0 VAM{I|L}QA[{I|L}V] 1.9568 - 342 + NaN NaN 181027.6 NaN 15253 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19130 79.432 NaN 197160 35 0 16091 0.261 + 34431 YPETLGRLLIL 11 61 644.3873405634052 1286.7601281936104 2 644.3870849609375 MULTI HCD FTMS 0 0 0 19127 84182.515625 0.1718924468960314 7 -0.17943572998046875 3 Unmodified _YPETLGRLLIL_ ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 24.957077063307313 0.23963058105834129 2 {I|L}TEE{I|L} 5 9 36.186 0 0 2.8122 0 0 683.4708345297346 0 683.4708345297346 0 20.21652514092061 0 0 0 0.4247425010840047 0 0 0 {I|L}TEE{I|L} 2.8122 - 44 NaN NaN 133234.9 NaN 15254 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19131 79.435 NaN 217700 35 0 25452 0.263 + 31850 VYMLAASLL 9 58 498.7749020040646 995.5352510749292 2 498.775146484375 MULTI HCD FTMS 0 0 0 19127 51797.046875 0.7956455412075819 3 -0.08194732666015625 4 Oxidation (M) _VYM(Oxidation (M))LAASLL_ ENSG00000143753|ENST00000323699|DEGS1 60.38955033654506 0.017036522530421875 2 [YV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AAS{I|L}{I|L} 9 0 + 65.837 0 0 6.6132 6.6132 87.068 0 0 0 15.659387198976589 42.53591878376909 15.659387198976589 5 0 1.8494850021680094 1.5228787452803376 0.5 0 + + [YV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AAS{I|L}{I|L};[YV]V[MT]AS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]AAS{I|L}{I|L};[YV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QT]{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV][QT]{I|L}{I|L} 6.6132;6.111;4.3814;3.3769;1.1451 +;-;-;-;- + 209 NaN NaN 126153 NaN 15255 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19132 79.439 NaN 141790 35 0 6987.1 0.261 + 15286 LPAFIMITL 9 61 509.8037904894488 1017.5930280456976 2 509.8039245605469 MULTI HCD FTMS 0 0 0 19127 45765.5546875 0.10695851084310459 23 -0.6473007202148438 5 Unmodified _LPAFIMITL_ tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1 4.3292370932331545 0.3181982124262546 2 {I|L}T{[TV]|[{I|L}S]} 4 7 12.307 0 0 1.2094 0 0 585.3354424517507 0 585.3354424517507 0 5.31743128760553 0 0 0 0 0 0 0 {I|L}T{[TV]|[{I|L}S]} 1.2094 - 59 + NaN NaN 111519.1 NaN 15256 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19133 79.442 NaN 100690 35 0 4951.3 0.261 + 30567 VNLLCATVF 9 56 490.26835251876264 978.5221521043253 2 490.26837158203125 MULTI HCD FTMS 0 0 0 19127 49640.94140625 0.41415804663087447 5 -0.13428497314453125 6 Unmodified _VNLLCATVF_ REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|66|1|anti-sense 6.723162845929126 0.3000504726104499 2 R[{M(Oxidation (M))|F}V] 3 -1 5.0617 0 0 0.51728 0 0 558.282030174025 0 558.282030174025 0 0.45757490560674974 0 0 0 0 0 0 0 R[{M(Oxidation (M))|F}V] 0.51728 - 44 NaN NaN 96302.3 NaN 15257 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19134 79.445 NaN 56670 35 0 4428.9 0.261 -1 0 45 457.2642972613403 912.5140415894806 2 457.2640686035156 MULTI HCD FTMS 0 0 0 19127 27891.390625 0.26588331796291903 -12 0.34139251708984375 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.532 0 0 747.4355636615494 0 747.4355636615494 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.532 - 10 + NaN NaN 98534.8 NaN 15258 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19135 79.449 NaN 224390 35 0 81259 0.261 -1 IWDINAML 8 57 496.2493885585525 990.484224183905 2 496.2493896484375 MULTI HCD FTMS 0 0 0 19127 26543.701171875 0.7492758853616373 5 -0.13428497314453125 8 Oxidation (M) _IWDINAM(Oxidation (M))L_ ENSG00000164758|ENST00000297347|MED30;ENST00000519391.1_1_8:118542904-118552214:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30 21.74664581756881 0.4337896562907935 2 [Y{I|L}]{I|L}[WH]{M(Oxidation (M))|F} 6 -1 24.442 0 0 2.4677 0 0 0 128.07266023409878 128.07266023409878 13.104028237526748 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 [Y{I|L}]{I|L}[WH]{M(Oxidation (M))|F} 2.4677 - 26 NaN NaN 116697.9 NaN 15259 3874 19127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19137 79.453 NaN 1322000 35 0 408820 0.327 + 3453 EFSSALFEL 9 79 521.7583074573846 1041.502061981569 2 521.7582397460938 MULTI HCD FTMS 0 0 0 19136 605228.375 1 0 0 1 Unmodified _EFSSALFEL_ REV__ENSG00000241945|ENST00000291576|PWP2 81.61307344734483 0.005330412723537057 2 [{M(Oxidation (M))|F}E]{[CA]|SS}[{I|L}A]{M(Oxidation (M))|F}E{I|L} 9 -1 + 40.514 0 0 3.89 3.89 81.521 0 0 0 1.5377254670814935 15.454876173296963 1.5377254670814935 1.5377254670814935 0 1.1694451763165201 0 1.4436726795685342 0 [{M(Oxidation (M))|F}E]{[CA]|SS}[{I|L}A]{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}D[Y{I|L}]{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]{[CA]|SS}[{I|L}A]E{M(Oxidation (M))|F}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}D[Y{I|L}]E{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[HN][C(Carbamidomethyl (C))K]E{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[TA]E{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[YG][TA]E{I|L};[{M(Oxidation (M))|F}E]{I|L}[YG][TA]E{I|L};[VP][C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E[YG][TA]E{I|L} 3.89;3.7423;2.6991;2.5515;1.8304;1.7812;1.7812;1.6122;1.5723;1.0704 +;-;-;-;-;-;-;-;-;- + 340 NaN NaN 286487.6 NaN 15260 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19138 79.458 NaN 764880 35 0 146390 0.261 + 10111 IFIDPGYQTF 10 76 600.8004028562299 1199.5862527792597 2 600.8004150390625 MULTI HCD FTMS 0 0 0 19136 323037.25 0.7265244095930365 3 -0.0852813720703125 2 Unmodified _IFIDPGYQTF_ ENSG00000121741|ENST00000610343|ZMYM2 78.06048673739656 0.008034375046376557 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}QT{M(Oxidation (M))|F} 10 2 + 58.566 0 0 4.8822 4.8822 86.046 0 0 0 2.592210718991147 41.61134467031138 2.592210718991147 9.164539485499262 0 2.094187677400525 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}QT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}DN{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}QT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[TP]S{M(Oxidation (M))|F}QT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{[VA]|[{I|L}G]}{M(Oxidation (M))|F}DGG{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{[VA]|[{I|L}G]}{M(Oxidation (M))|F}DN{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[TP]S{M(Oxidation (M))|F}[AG]T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[TP]S{M(Oxidation (M))|F}DN{M(Oxidation (M))|F} 4.8822;4.1182;4.1113;3.8167;3.6699;3.3473;3.0528;3.0458;2.906;2.899 -;-;-;-;-;-;-;-;-;- 445 NaN NaN 211332 NaN 15261 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19139 79.461 NaN 516510 35 0 67251 0.261 + 17486 LYTALQQYF 9 69 573.795032808335 1145.57551268347 2 573.7950439453125 MULTI HCD FTMS 0 0 0 19136 271253.375 0.7734705745335665 2 -0.0524444580078125 3 Unmodified _LYTALQQYF_ ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;nc|ENSG00000089053|Q9UJX4-3|ANAPC5 103.35351024395868 0.004027461563756449 2 [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F} 9 0 + 96.123 0 0 8.3908 8.3908 92.623 0 0 0 1.5039247104859044 1.5039247104859044 1.5039247104859044 9.208187539523749 0 3.1677353201839438 1.5228787452803376 1.5114393726401687 0 + + [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}Q[AG]Y{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}[AG]QY{M(Oxidation (M))|F};[Y{I|L}]TAAAVQY{M(Oxidation (M))|F};[YT]{I|L}A{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}[AG][AG]Y{M(Oxidation (M))|F};[Y{I|L}]TVNVQY{M(Oxidation (M))|F};[YT]A{I|L}{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TAAAV[AG]Y{M(Oxidation (M))|F};[YT]{I|L}A{I|L}Q[AG]Y{M(Oxidation (M))|F} 8.3908;7.587;7.4557;6.7765;6.4279;6.4164;6.272;5.9481;5.7371;5.6241 +;-;-;-;-;-;-;-;-;- + 447 NaN NaN 175445.4 NaN 15262 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19140 79.465 NaN 1286600 35 0 218580 0.261 + 21490 PYFNAPVYL 9 74 542.279458511811 1082.5443640904218 2 542.2802124023438 MULTI HCD FTMS 0 0 0 19136 389489 0.24865456604044006 -3 0.07523345947265625 4 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 77.98433622928108 0.006504613272346738 2 NAPVY{I|L} 6 3 64.351 0 0 5.9444 0 0 407.184282681612 0 407.184282681612 0 39.11720208836661 0 0 0 2.094187677400525 0 0 1.1549471895720984 + NAPVY{I|L} 5.9444 + + 432 NaN NaN 288866.8 NaN 15263 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19141 79.468 NaN 430790 35 0 132330 0.263 -1 0 36 422.1985239190314 842.3824949048628 2 422.1987609863281 MULTI HCD FTMS 0 0 0 19136 178064.125 0.14361282617683563 24 -0.6669692993164062 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 156325.4 NaN 15264 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19142 79.471 NaN 512780 35 0 55431 0.261 + 2870 DYPRYLFEI 9 73 608.3057717570529 1214.5969905809056 2 608.3055419921875 MULTI HCD FTMS 0 0 0 19136 153267.046875 0.20929761405067204 -3 0.07523345947265625 6 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 53.31671820480216 0.026930930319421505 2 {[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 76.405 0 0 6.2905 6.2905 93.411 0 0 0 4.1465188641551265 4.1465188641551265 4.1465188641551265 43.767959391884546 0 2.2302046884880937 2 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L};{[QG]|[NA]}[WP][EP]{I|L}{M(Oxidation (M))|F}E{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PRAA[RH]{[ET]|[MV]};{[QN]|[E{I|L}]|[KN]}[W{I|L}]{[YC]|[HE]}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[EP][EP]{I|L}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6.2905;2.687;1.6871;1.5129;1.0472 +;-;-;-;- + 505 NaN NaN 183436.6 NaN 15265 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19143 79.475 NaN 56052 35 0 5207.7 0.264 -1 FHRHMIDLSH 10 38 436.87998994898686 1307.6181404471606 3 437.2149353027344 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _FHRHM(Oxidation (M))IDLSH_ ENSG00000184863|ENST00000401878|RBM33 0.6976657623105312 0.47161084886498755 2 M 1 -1 6.9897 0 0 0.53454 0 0 451.23778263641685 722.2985933893186 1173.5363760257355 0 0 0 0 0 0 0 0 0 M 0.53454 + + 2 + NaN NaN 115566.2 NaN 15266 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19144 79.478 NaN 115470 35 0 11052 0.261 + 5874 FPDFVTIDHF 10 55 619.2988582946385 1236.583163656077 2 619.800048828125 MULTI HCD FTMS 0 0 0 19136 14259.88671875 0.2603970513075202 9 -0.2484283447265625 8 Unmodified _FPDFVTIDHF_ ENSG00000104142|ENST00000220509|VPS18 21.536976647645854 0.3096624038397699 2 VV{I|L}E{M(Oxidation (M))|F} 5 7 39.327 0 0 3.1803 0 0 631.2983875959 0 631.2983875959 0 16.139829889124314 0 0 0 0.28872548999643577 0 0.3252574989159953 0 VV{I|L}E{M(Oxidation (M))|F} 3.1803 - 71 NaN NaN 110427.3 NaN 15267 3875 19136 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19146 79.483 NaN 602290 35 0 82009 0.327 + 11390 IYPDSFTVL 9 57 527.7766253954015 1053.538697857603 2 527.7764892578125 MULTI HCD FTMS 0 0 0 19145 263372.375 0.9373242152027985 -2 0.0590667724609375 1 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 88.90359156742426 0.00455469703666567 2 [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L} 9 0 + 78.412 0 0 7.4427 7.4427 93.516 0 0 0 19.383024673460056 56.27349613383288 19.383024673460056 16.32068444291761 0 2.2302046884880937 1.5228787452803376 1.1549471895720984 0 + + [Y{I|L}][DP]S{M(Oxidation (M))|F}TV{I|L};[Y{I|L}][DP]SA{I|L}Y{I|L};[Y{I|L}][DG][TP]{I|L}Y{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[PA][C(Carbamidomethyl (C))H]TV{I|L} 7.4427;5.8936;3.8979;0.83974 +;-;-;- + 166 NaN NaN 179843.5 NaN 15268 3876 19145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19147 79.487 NaN 538820 35 0 52346 0.261 + 17508 LYTILTTQL 9 83 533.3132584165721 1064.6119638999442 2 533.3133544921875 MULTI HCD FTMS 0 0 0 19145 78660.0390625 0.5445535638470196 2 -0.05571746826171875 2 Unmodified _LYTILTTQL_ ENSG00000128654|ENST00000249442|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;nc|ENSG00000128654|O75431-2|MTX2 36.506200033944 0.08138327636155518 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK{I|L}T[WR] 8 6 + 42.712 0 0 4.012 4.012 88.912 0 0 0 0.6357307270902623 -0.753800256993955 -0.753800256993955 25.06289394320262 0 1.25 1.5228787452803376 0.6109243748081782 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}KK{I|L}T[WR];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]KK[WR] 4.012;1.6578 -;- 1381 NaN NaN 170974.3 NaN 15269 3876 19145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19148 79.491 NaN 160310 35 0 12878 0.261 + 35647 YYIFIPSKF 9 49 589.3186103341241 NaN 0 589.3186645507812 PEAK HCD FTMS 0 0 0 19145 45771.40625 0.6045713982626495 1 -0.02288055419921875 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 2 {I|L} 1 8 13.979 0 0 1.1881 0 0 326.1280976477315 734.387112146558 1060.5152097942896 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.1881 + + 17 + NaN NaN 120116.8 NaN 15270 3876 19145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19149 79.494 NaN 97998 35 0 6198.8 0.261 + 16191 LPVLESFKVSF 11 52 633.3607527298672 1264.7069525265342 2 633.3612670898438 MULTI HCD FTMS 0 0 0 19145 82162.359375 0.48331199430877647 4 -0.10748291015625 4 Unmodified _LPVLESFKVSF_ ENSG00000118137|ENST00000236850|APOA1 29.28111348798908 0.2059830635689761 2 {I|L}PV{I|L}EG 6 6 47.484 0 0 3.7546 0 0 0 653.3433931940061 653.3433931940061 19.296831374325905 0 0 0 0 1.3494850021680094 0 0 0 {I|L}PV{I|L}EG 3.7546 - 56 + NaN NaN 112142.8 NaN 15271 3876 19145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19150 79.498 NaN 78172 35 0 5999.9 0.261 -1 EYLMGKFPFF 10 36 647.8129769080996 1293.611400882999 2 647.8128051757812 MULTI HCD FTMS 0 0 0 19145 36324.453125 0.8584154449164668 3 -0.07521820068359375 5 Oxidation (M) _EYLM(Oxidation (M))GKFPFF_ ENSG00000164379|ENST00000296839|FOXQ1 10.073929032068715 0.4168838835836452 2 {M(Oxidation (M))|F}{I|L}HH 4 -1 11.682 0 0 0.90309 0 0 741.3869806577042 0 741.3869806577042 0 6.197887582883936 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}HH 0.90309 - 12 NaN NaN 108716.9 NaN 15272 3876 19145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19151 79.501 NaN 54716 35 0 8945.5 0.264 + 21240 PRIKKQLRVLA 11 37 441.2974830700018 NaN 0 441.7340393066406 PEAK HCD FTMS 0 0 0 19145 32347.25 0.2981822429506074 -4 0.10479736328125 6 Unmodified _PRIKKQLRVLA_ ENSG00000270379|ENST00000604834|HEATR9;nc|ENSG00000270379|A2RTY3-3|HEATR9 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99309.1 NaN 15273 3876 19145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19153 79.506 NaN 2441300 35 0 342430 0.327 + 29884 VFDIHVIDF 9 105 552.7899350185448 1103.5653171038896 2 552.790283203125 MULTI HCD FTMS 0 0 0 19152 1108270.25 0.4285115117954024 3 -0.08460235595703125 1 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 118.89474601620944 0.0014903111061077812 2 V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F} 9 0 + 101.17 0 0 9.1675 9.1675 89.361 0 0 0 57.24139937812454 16.478174818886373 16.478174818886373 1.0071123335628585 0 3.0501648626366045 0 2.013632853717045 0 + + V{M(Oxidation (M))|F}D{I|L}HV{I|L}D{M(Oxidation (M))|F};V{M(Oxidation (M))|F}D{I|L}H{I|L}VD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{I|L}D{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}HVEV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]D{I|L}H{I|L}VD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HVEV{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}VH{M(Oxidation (M))|F}V{I|L}D{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}H{I|L}VD{M(Oxidation (M))|F} 9.1675;9.0763;6.6304;6.3808;5.7449;5.5156;5.4953;5.4953;5.4786;5.266 +;-;+;-;-;-;-;-;-;- + 3873 + NaN NaN 469708 NaN 15274 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19154 79.51 NaN 921030 35 0 276030 0.261 + 15820 LPIDGANDLF 10 54 537.7770795744138 1073.5396062156276 2 537.7774047851562 MULTI HCD FTMS 0 0 0 19152 559368.125 0.6253077669908339 1 -0.0328369140625 2 Unmodified _LPIDGANDLF_ ATP5C1-MGEA5|1|fusion;ATP5C1-MGEA5|2|fusion;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF;nc|ENSG00000198408|O60502-4|OGA 103.41943736471063 5.9292398775303266E-05 2 [{I|L}P]{I|L}DQND{I|L}{M(Oxidation (M))|F} 9 2 + 76.71 0 0 7.1455 7.1455 90.539 0 0 0 4.762036441594191 71.22540323302104 4.762036441594191 9.208187539523749 0 2.309894379144197 0 0.7302046884880937 0.4247425010840047 [{I|L}P]{I|L}DQND{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}D[AG]ND{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}DQGGD{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}D[AG]GGD{I|L}{M(Oxidation (M))|F};[{I|L}P]{I|L}DQ[{M(Oxidation (M))|F}V]{[QD]|[EN]|[WG]|[KD]|[RS]};[{I|L}P]{I|L}D[AG][{M(Oxidation (M))|F}V]{[QD]|[EN]|[WG]|[KD]|[RS]} 7.1455;6.2878;6.2878;5.0385;1.576;0.71826 -;+;-;-;-;- + 267 NaN NaN 245087.4 NaN 15275 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19155 79.514 NaN 1241300 35 0 297710 0.261 + 7817 FYPYGLQTF 9 91 568.2756770173537 1134.5368011015073 2 568.2763671875 MULTI HCD FTMS 0 0 0 19152 456104.21875 0.574440959175916 7 -0.19598388671875 3 Unmodified _FYPYGLQTF_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant 78.7280429016045 0.006263961847259105 2 {I|L}QT{M(Oxidation (M))|F} 4 5 48.505 0 0 4.2753 0 0 627.2680155563886 0 627.2680155563886 0 27.407745183588847 0 0 0 1.805462187404089 0 0.4247425010840047 0.3807196863200844 + {I|L}QT{M(Oxidation (M))|F} 4.2753 + + 1174 + NaN NaN 281655.8 NaN 15276 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19156 79.517 NaN 857160 35 0 108740 0.261 + 13577 KYPENFFLL 9 83 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 19152 424665.1875 0.002158690117083693 152 -4.239990234375 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 74.19965305603844 0.007729275404663812 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 83.329 0 0 7.1245 7.1245 88.138 0 0 0 5.568109453757657 16.478174818886373 5.568109453757657 5.568109453757657 0 2.4604093769761874 0 0 1.2561420478726841 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]EN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]AAEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PGGE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[AG]NE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 7.1245;6.6484;6.3372;6.3109;5.8611;5.8611;5.8349;5.7543;5.5236;5.0476 +;-;-;-;-;-;-;-;-;- + 2207 NaN NaN 210302.2 NaN 15277 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19157 79.521 NaN 541380 35 0 69482 0.261 + 7256 FSYTISPYS 9 81 532.7495721526714 1063.4845913721426 2 532.7681274414062 MULTI HCD FTMS 0 0 0 19152 26140.865234375 0.255326788196319 6 -0.16315460205078125 5 Unmodified _FSYTISPYS_ REV__CHRNB3|p.F222S|1|0.5|ENSG00000147432|chr8:42731972-42731972|T/C|missense_variant 28.486842064014134 0.11819662193267319 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]YSMC{I|L} 9 -1 + 48.971 0 0 4.6048 4.6048 87.563 0 0 0 3.044220500604453 -3.0285796883795655 -3.0285796883795655 11.157424843733637 0 0 1.6989700043360187 1.3441876774005248 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]YSMC{I|L};{[YC]|[HE]}V[W{M(Oxidation (M))|F}]VT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]Y{[WT]|[RM]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QV]|[N{I|L}]|[RA]|[KV]}{[WN]|[YH]}H{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}[YT]MC{I|L};{[WT]|[RM]}{M(Oxidation (M))|F}[YT]VT{M(Oxidation (M))|F};{[YC]|[HE]}VSY{[TV]|[{I|L}S]}{[ET]|[MV]};[NS]T[PA]{NN|[MP]|[D{I|L}]|[EV]}VT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{[TV]|[{I|L}S]}Y{[WT]|[RM]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T][MT]V{[YC]|[HE]} 4.6048;3.5557;3.4646;3.0652;2.6624;2.4576;1.7407;1.7292;1.3501;0.90956 -;-;-;-;-;-;-;-;-;- 768 NaN NaN 170899.7 NaN 15278 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19158 79.524 NaN 334830 35 0 22602 0.261 + 18649 MYGLFQTSF 9 86 555.2517833223443 1108.4890137114885 2 555.2523193359375 MULTI HCD FTMS 0 0 0 19152 70360.734375 0.2748164935044962 7 -0.19598388671875 6 Oxidation (M) _M(Oxidation (M))YGLFQTSF_ ENSG00000077147|ENST00000371142|TM9SF3 78.14939416004806 0.006451203201226903 2 [Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F} 9 2 + 68.583 0 0 6.1871 6.1871 90.597 0 0 0 8.805767496145073 47.61423372459993 8.805767496145073 13.015384402724592 0 1.9247425010840047 1.6989700043360187 0.28872548999643577 0.3807196863200844 [Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]{M(Oxidation (M))|F}QTS{M(Oxidation (M))|F};[Y{I|L}]{[NV]|[RG]}{[YC]|[HE]}TS{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YG]{M(Oxidation (M))|F}[AG]TS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]{[YC]|[HE]}TS{M(Oxidation (M))|F};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[VS]YN;[Y{M(Oxidation (M))|F}]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[VS]YN 6.1871;5.0129;4.926;4.5417;4.3765;3.7518;3.3675;2.7311;1.9043;0.64321 -;-;+;-;-;-;-;-;-;- + 567 NaN NaN 148863.2 NaN 15279 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19159 79.527 NaN 392450 35 0 19654 0.261 + 24459 RYLDLFTSF 9 80 581.3004618451429 1160.5863707570857 2 581.30029296875 MULTI HCD FTMS 0 0 0 19152 77333.5 0.01277667675553845 32 -0.8936004638671875 7 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 34.93206674587334 0.08860942999206235 2 KYW{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 7 4 61.274 0 0 5.2796 0 0 183.08954982447932 0 183.08954982447932 0 55.78926674489949 0 0 0 1.8807196863200843 0 0.6505149978319906 0 KYW{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.2796 - 176 + NaN NaN 165625.1 NaN 15280 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19160 79.531 NaN 399170 35 0 59164 0.261 + 15566 LPDQTLPIL 9 61 505.30011340610815 1008.5856738790163 2 505.30023193359375 MULTI HCD FTMS 0 0 0 19152 101762.375 0.5860490671821927 -5 0.12767791748046875 8 Unmodified _LPDQTLPIL_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 29.081581746732265 0.1154664336125038 2 {I|L}P{I|L}{I|L} 4 5 36.542 0 0 3.6231 0 0 554.2690907209 0 554.2690907209 0 27.08822047627011 0 0 0 0.8494850021680094 0 0 0 + {I|L}P{I|L}{I|L} 3.6231 + + 62 NaN NaN 172066.9 NaN 15281 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19161 79.534 NaN 231020 35 0 86031 0.261 + 33567 YILMKVPK 8 55 496.3039204652466 990.5932879972933 2 496.3039855957031 MULTI HCD FTMS 0 0 0 19152 31790.59375 0.3555251663697256 -5 0.12767791748046875 9 Unmodified _YILMKVPK_ REV__ENSG00000115806|ENST00000234160|GORASP2;REV__ENST00000442798.5_1_2:171793138-171822637:+|nuORF;REV__nc|ENSG00000115806|Q9H8Y8-3|GORASP2 6.354104778181461 0.5325651638111438 2 [Y{I|L}]{I|L} 3 -1 23.301 0 0 2.3522 0 0 0 598.3388989194214 598.3388989194214 14.348331157524965 0 0 0 0 0 2 0 0 [Y{I|L}]{I|L} 2.3522 + + 28 NaN NaN 127133.9 NaN 15282 3877 19152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19163 79.539 NaN 644520 35 0 28525 0.327 + 14834 LKDWGPKN 8 88 479.2609651264298 NaN 0 479.2774353027344 PEAK HCD FTMS 0 0 0 19162 16659.208984375 1 0 0 1 Unmodified _LKDWGPKN_ ENSG00000105954|ENST00000222674|NPVF;nc|ENSG00000105954|Q9HCQ7-2|NPVF 7.910154910731844 0.38822285293237185 2 Q 1 8 5.4846 0 0 0.57339 0 0 458.2409287953534 367.1968172643404 825.4377460596938 0 0 0 0 0 0 0 0 0 Q 0.57339 - 40 + NaN NaN 181776.9 NaN 15283 3878 19162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19164 79.543 NaN 900680 35 0 147460 0.261 + 32281 VYTVVDEMFL 10 79 616.2994505061508 1230.5843480791016 2 616.2993774414062 MULTI HCD FTMS 0 0 0 19162 348980.4375 0.09346015726155495 -12 0.32785797119140625 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 214.13773924641143 6.677275740084004E-25 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 119.96 0 0 9.7485 9.7485 96.282 0 0 0 16.478174818886373 90.32251573369031 16.478174818886373 15.708253071758875 0 3.1549471895720984 1.2218487496163564 2.885151878060192 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVVTM{I|L};[YT]VVVDEYM{I|L};[YV]YEDV{I|L}SM{I|L};[YV]S{I|L}VDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[QN]|[E{I|L}]|[KN]}DV{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}DV{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{I|L} 9.7485;8.472;8.3285;7.8071;7.62;7.1562;6.9955;1.8191;1.7176 +;-;-;-;-;-;-;-;- + 1261 NaN NaN 228117.9 NaN 15284 3878 19162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19165 79.547 NaN 704900 35 0 51859 0.261 + 20196 NYLDRFLSL 9 96 570.8059667679497 1139.5973806026993 2 570.806396484375 MULTI HCD FTMS 0 0 0 19162 248578.40625 0.009054000779090507 28 -0.7788467407226562 3 Unmodified _NYLDRFLSL_ CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1 78.06048673739656 0.006479972202176041 2 [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L} 9 0 + 82.087 0 0 7.2032 7.2032 94.35 0 0 0 1.8309843995574226 1.8309843995574226 1.8309843995574226 30.31357210935475 0 2.524227503252014 1.6989700043360187 0.25 0.3252574989159953 + + [YN]{I|L}DR{M(Oxidation (M))|F}{I|L}S{I|L};[YN]{I|L}DR[Y{I|L}]A{I|L};[YN]{I|L}D[VP][HV]A{I|L} 7.2032;4.5432;3.1682 +;-;- + 596 NaN NaN 194155.2 NaN 15285 3878 19162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19166 79.55 NaN 535620 35 0 94657 0.261 + 5239 FFDPSLLHL 9 73 544.7926357341055 1087.5707185350109 2 544.79296875 MULTI HCD FTMS 0 0 0 19162 243000.484375 0.793610013101275 2 -0.05176544189453125 4 Unmodified _FFDPSLLHL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 52.268347100219714 0.028397529699942435 2 PD{M(Oxidation (M))|F}E 4 8 31.274 0 0 2.8756 0 0 581.3522816388687 0 581.3522816388687 0 2.0293898105400388 0 0 0 0.9247425010840047 0 0 0 PD{M(Oxidation (M))|F}E 2.8756 - 649 NaN NaN 187991.7 NaN 15286 3878 19162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19167 79.553 NaN 198130 35 0 47117 0.261 + 20104 NYIPRFWTF 9 46 622.3162503270299 1242.6179477208598 2 622.3162231445312 MULTI HCD FTMS 0 0 0 19162 90298.953125 0.006948885477807596 66 -1.8473052978515625 5 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 26.268140514670165 0.13340543277302316 2 [YN]{I|L} 3 6 41.254 0 0 3.32 0 0 0 849.4052287091741 849.4052287091741 12.314309196763702 0 0 0 0 1 1.6989700043360187 0 0.3807196863200844 + [YN]{I|L} 3.32 + + 31 NaN NaN 122354 NaN 15287 3878 19162 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19169 79.558 NaN 7638900 35 0 1589000 0.326 + 4546 EYLIVFPKL 9 70 561.3339523652179 1120.6533517972357 2 561.3344116210938 MULTI HCD FTMS 0 0 0 19168 4294865.5 0.6533606876155825 3 -0.0845947265625 1 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 139.13845188893973 5.0762478717762276E-05 2 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 103.55 0 0 9.2398 9.2398 94.558 0 0 0 23.64773809806151 14.973024840566467 14.973024840566467 10 0 2.8494850021680094 1.3979400086720375 2.9802046884880937 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L};[YE]{I|L}{I|L}{M(Oxidation (M))|F}VPK{I|L};{I|L}{I|L}YEV{M(Oxidation (M))|F}PK{I|L};{I|L}{I|L}YE{M(Oxidation (M))|F}VPK{I|L};{I|L}{I|L}V[YE]{M(Oxidation (M))|F}PK{I|L};{I|L}{I|L}[HM][RN]PK{I|L};{I|L}{I|L}[C(Carbamidomethyl (C))R][YR]K{I|L} 9.2398;8.3475;6.4009;5.5086;4.873;1.628;1.2384 +;-;-;-;-;-;- + 596 NaN NaN 638352 NaN 15288 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19170 79.563 NaN 4426400 35 0 1723800 0.225 + 17312 LYPQFMFHL 9 74 598.3021471797576 1194.5897414263152 2 598.302490234375 MULTI HCD FTMS 0 0 0 19168 2684896 0.8945068240437756 1 -0.03226470947265625 2 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 131.29775728308752 0.0005262696486345744 2 {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 98.853 0 0 8.2751 8.2751 91.349 0 0 0 25.024772820407307 8.546598001520934 8.546598001520934 8.546598001520934 0 2.973197507588033 1.6989700043360187 0 0.7059771852360797 + + {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]P[AG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}Y{[WT]|[RM]}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}H{I|L};[QP][Y{I|L}]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}[Y{I|L}]M{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}M[Y{I|L}]{M(Oxidation (M))|F}H{I|L};[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L}Y{I|L};[QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}[Y{I|L}]H{I|L} 8.2751;7.5596;6.9133;6.2748;4.869;4.1871;3.7686;2.5309;2.3891;1.965 +;+;-;-;-;-;-;-;-;- + 414 + NaN NaN 617014.6 NaN 15289 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19171 79.566 NaN 325220 35 0 51649 0.262 -1 0 71 501.29047871913184 500.28320225253185 1 501.29058837890625 MULTI HCD FTMS 0 0 0 19168 196253.078125 0.41618180259030674 28 -0.7855377197265625 3 NaN NaN 2 V 1 -1 1.5938 0 0 0.31858 0 0 174.08884908045997 224.09742151431877 398.18627059477876 0 0 0 0 0 0 0 0 0 V 0.31858 - 7 + NaN NaN 133668.5 NaN 15290 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19172 79.569 NaN 913090 35 0 56741 0.261 + 22733 QYEIWRELF 9 73 642.3246241452517 1282.6346953573034 2 642.3248291015625 MULTI HCD FTMS 0 0 0 19168 245340.3125 0.33096498871684876 -4 0.1047821044921875 4 Unmodified _QYEIWRELF_ ENSG00000168092|ENST00000527958|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-2|PAFAH1B2;nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-4|PAFAH1B2 103.82355648334675 0.003950725192926219 2 [YQ]EW{I|L}RE{I|L}{M(Oxidation (M))|F} 9 2 + 76.606 0 0 5.9725 5.9725 92.57 0 0 0 19.05378336983531 49.95026597533851 19.05378336983531 35.99275660196689 0 1.9802046884880937 0 1.274227503252014 2.659379381312206 [YQ]EW{I|L}RE{I|L}{M(Oxidation (M))|F};[YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F};[WR]E[{M(Oxidation (M))|F}T][VG]E{I|L}{M(Oxidation (M))|F};{[RE]|[WV]}W[{M(Oxidation (M))|F}T][VG]E{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{[YC]|[HE]}N{I|L}Q[K{I|L}];[WR]H[RN]{I|L}E{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YQ]ER[W{I|L}]E{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{[YC]|[HE]}GG{I|L}Q[K{I|L}];{[WS]|[C(Carbamidomethyl (C)){I|L}]}E{[YC]|[HE]}N{I|L}[AG][K{I|L}];{[WS]|[C(Carbamidomethyl (C)){I|L}]}CC[R{M(Oxidation (M))|F}]{I|L}Q[K{I|L}] 5.9725;3.1664;2.515;2.0058;1.7818;1.5703;1.4251;1.0672;1.0672;1.024 -;+;-;-;-;-;-;-;-;- + 736 NaN NaN 226474.6 NaN 15291 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19173 79.572 NaN 266160 35 0 18010 0.262 + -1 LPHLYCFF 8 68 548.7675777501196 1095.520602567039 2 548.7685546875 MULTI HCD FTMS 0 0 0 19168 59033.80859375 0.45288264752495316 4 -0.11081695556640625 5 Carbamidomethyl (C) _LPHLYC(Carbamidomethyl (C))FF_ REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF 24.20995872069341 0.415665547393293 2 {I|L}P{I|L}D 4 -1 44.329 0 0 4.0464 0 0 0 654.2503145807249 654.2503145807249 13.007666046223033 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 {I|L}P{I|L}D 4.0464 - 143 + NaN NaN 127444.5 NaN 15292 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19174 79.576 NaN 77275 35 0 16564 0.262 + 20484 PCPGARHH 8 36 437.7092130316432 873.4038731300864 2 437.70953369140625 MULTI HCD FTMS 0 0 0 19168 95560.9296875 0.9462208638940414 -1 0.019500732421875 6 Unmodified _PCPGARHH_ REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 7 NaN NaN 101349.4 NaN 15293 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19175 79.579 NaN 162800 35 0 31959 0.261 -1 ILCYTWEMY 9 51 619.2671704920741 1236.5197880509481 2 619.265380859375 MULTI HCD FTMS 0 0 0 19168 58510.22265625 0.33928604273043117 -6 0.15717315673828125 7 Oxidation (M) _ILCYTWEM(Oxidation (M))Y_ ENSG00000152034|ENST00000281806|MCHR2 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4 -1 34.399 0 0 2.7819 0 0 674.2801991193375 0 674.2801991193375 0 21.211375162600703 0 0 0 1.1747425010840047 0 0 0 {M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 2.7819 - 53 NaN NaN 104056.7 NaN 15294 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19176 79.582 NaN 62061 35 0 6778.8 0.263 + 8279 GVDVSEVLF 9 26 482.7530060101348 NaN 0 482.7525939941406 PEAK HCD FTMS 0 0 0 19168 52678.73828125 1 0 0 8 Unmodified _GVDVSEVLF_ ENSG00000141337|ENST00000621439|ARSG 15.847184025352803 0.21527282152051216 2 E 1 8 14.292 0 0 1.4833 0 0 377.23469746773213 454.19236169986567 831.4270591675978 0 0 0 0 0 0.8807196863200843 0 0 0 + E 1.4833 + + 3 + NaN NaN 100158.8 NaN 15295 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19177 79.586 NaN 115710 35 0 16336 0.261 + -1 PECPMWCLL 9 55 611.2598271560336 1220.505101378867 2 611.2611083984375 MULTI HCD FTMS 0 0 0 19168 37073.0625 0.9216173544086117 1 -0.03226470947265625 9 2 Carbamidomethyl (C),Oxidation (M) _PEC(Carbamidomethyl (C))PM(Oxidation (M))WC(Carbamidomethyl (C))LL_ REV__ENST00000559285.1_1_15:67722734-67752085:-|nuORF 4.3292370932331545 0.3181982124262546 2 {I|L}{I|L} 2 -1 20.969 0 0 1.7181 0 0 976.3265163922184 0 976.3265163922184 0 17.870156338638594 0 0 0 0 0 0 0 {I|L}{I|L} 1.7181 + + 4 NaN NaN 103595.5 NaN 15296 3879 19168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19179 79.591 NaN 211100 35 0 36355 0.327 + 34667 YPTFYLDL 8 53 516.2571557995369 1030.4997586658737 2 516.2571411132812 MULTI HCD FTMS 0 0 0 19178 58179.73828125 0.6357544055641737 2 -0.05233001708984375 1 Unmodified _YPTFYLDL_ REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|2 16.942295170755138 0.46913822049235215 2 N{I|L}D{I|L} 4 -1 40.745 0 0 3.9539 0 0 557.25102431465 0 557.25102431465 0 14.80327215271494 0 0 0 0.8807196863200843 0 0 0 N{I|L}D{I|L} 3.9539 - 60 NaN NaN 116057 NaN 15297 3880 19178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19180 79.595 NaN 121520 35 0 5407.8 0.261 + -1 MLILLWIT 8 74 509.8037904894488 1017.5930280456976 2 510.3057556152344 MULTI HCD FTMS 0 0 0 19178 34448.7890625 0.1656798644094697 29 -0.8089981079101562 2 Oxidation (M) _M(Oxidation (M))LILLWIT_ REV__ENST00000257787.5_1_6:88385034-88385271:-|nuORF 2.302733041254933 0.5385759549224092 2 V 1 -1 3.9794 0 0 0.39106 0 0 691.3991936724539 224.09739099674064 915.4965846691945 0 0 0 0 0 0 0 0 0 V 0.39106 - 33 + NaN NaN 115484.5 NaN 15298 3880 19178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19181 79.599 NaN 117520 35 0 5298.4 0.261 + -1 AMKVTPAVF 9 56 490.26835251876264 978.5221521043253 2 490.2688903808594 MULTI HCD FTMS 0 0 0 19178 40804.546875 0.340435353332768 11 -0.31026458740234375 3 Oxidation (M) _AM(Oxidation (M))KVTPAVF_ REV__ENSG00000015133|ENST00000389857|CCDC88C;REV__nc|ENSG00000015133|Q9P219-2|CCDC88C;REV__nc|ENSG00000015133|Q9P219-3|CCDC88C 10.823927491677226 0.26684000660059787 2 YP 2 -1 10.261 0 0 1.0486 0 0 282.16669663733154 433.20539270572505 715.3720893430566 0 0 0 0 0 0.3807196863200844 0 0 0 YP 1.0486 - 26 + NaN NaN 104354.1 NaN 15299 3880 19178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19183 79.603 NaN 1894000 35 0 348910 0.327 + 21491 PYFNAPVYL 9 78 542.279458511811 1082.5443640904218 2 542.2794799804688 MULTI HCD FTMS 0 0 0 19182 1079704.25 0.6892964672577886 3 -0.0984954833984375 1 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 101.72198241140316 0.004218805956062179 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NAPVY{I|L} 9 0 + 88.622 0 0 8.1864 8.1864 95.495 0 0 0 11.311508337315175 67.94782147359811 11.311508337315175 23.594405869988364 0 2.2614393726401687 0 0.6549471895720985 1.4386218330464624 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}NAPVY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}GGAPVY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AA{[WT]|[RM]}VY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[WY]PVY{I|L};[Y{I|L}]MN[H{I|L}][RH];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[RK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WQ][{I|L}T]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}N[H{I|L}][RH];[Y{I|L}]MGG[H{I|L}][RH];[Y{I|L}]M[HQ]V[RH] 8.1864;6.0069;3.0174;2.4387;2.2594;2.1622;2.0704;1.4706;1.4038;1.3865 +;-;-;-;-;-;-;-;-;- + 1437 NaN NaN 374246.3 NaN 15300 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19184 79.608 NaN 2392000 35 0 197800 0.261 + 17264 LYPLTNYTF 9 105 566.2895386158357 1130.5645242984713 2 566.2879638671875 MULTI HCD FTMS 0 0 0 19182 1011987.5 0.24755688971014755 -8 0.20232391357421875 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 176.83740622441886 1.0594397382223596E-10 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 113.85 0 0 10.07 10.07 90.085 0 0 0 1.234835080588681 1.234835080588681 1.234835080588681 1.234835080588681 0 2.860924374808178 1.5228787452803376 1.110924374808178 0.7302046884880937 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};Y{I|L}P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};Y{I|L}PK{[CP]|[EA]}YT{M(Oxidation (M))|F} 10.07;9.9613;9.2688;8.8591;8.6101;8.5829;8.0787;7.7813;7.1226;6.6279 +;-;-;-;-;-;-;-;-;- + 4629 NaN NaN 462281.2 NaN 15301 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19185 79.611 NaN 924060 35 0 116660 0.261 + 2871 DYPRYLFEI 9 67 608.3057717570529 1214.5969905809056 2 608.3060302734375 MULTI HCD FTMS 0 0 0 19182 573195.25 0.7827409782875316 3 -0.0984954833984375 3 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 81.9152076656658 0.005232646987511684 2 DYPRY{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 92.106 0 0 7.5832 7.5832 89.476 0 0 0 6.708187539523749 6.708187539523749 6.708187539523749 6.708187539523749 0 2.579689690656103 2 1.1237125054200234 0 + + DYPRY{I|L}{M(Oxidation (M))|F}E{I|L};{[YD]|[{M(Oxidation (M))|F}M]}PRY{I|L}{M(Oxidation (M))|F}E{I|L};DYPY[KA][KA]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7.5832;7.0309;2.3831 +;+;- + 461 + NaN NaN 228070.3 NaN 15302 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19186 79.615 NaN 1061700 35 0 147240 0.261 + 7818 FYPYGLQTF 9 89 568.2756770173537 1134.5368011015073 2 569.7599487304688 MULTI HCD FTMS 0 0 0 19182 25049.111328125 0.2766873292054855 12 -0.34976959228515625 4 Unmodified _FYPYGLQTF_ ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;nc|ENSG00000100242|Q9UH99-3|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant 23.1484247019978 0.1603590852062899 2 QT{M(Oxidation (M))|F} 3 6 21.956 0 0 1.9352 0 0 740.352026865596 0 740.352026865596 0 3.5121967796476383 0 0 0 0.3494850021680094 0 0 0.3054621874040891 + QT{M(Oxidation (M))|F} 1.9352 + + 248 + NaN NaN 246331.2 NaN 15303 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19187 79.618 NaN 451980 35 0 32707 0.261 + 12358 KNRFQAVL 8 88 488.29211701852006 974.5696811038401 2 488.2981262207031 MULTI HCD FTMS 0 0 0 19182 83141.6015625 0.5811512929508738 -4 0.0974884033203125 5 Unmodified _KNRFQAVL_ ENSG00000178913|ENST00000313368|TAF7 18.13498045792455 0.4603629008820478 2 Q{I|L}AMV{I|L} 6 6 40.766 0 0 4.183 0 0 301.1992359845719 0 301.1992359845719 0 32.172567083744056 0 0 0 1.5283773187068794 0 0 0.2742275032520141 Q{I|L}AMV{I|L} 4.183 - 151 NaN NaN 156033.8 NaN 15304 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19188 79.621 NaN 342290 35 0 102320 0.261 + 8741 HHGAGAFF 8 48 422.1985239190314 842.3824949048628 2 422.1985778808594 MULTI HCD FTMS 0 0 0 19182 139738.9375 0.11270267798930973 30 -0.8451614379882812 6 Unmodified _HHGAGAFF_ ENSG00000152977|ENST00000282928|ZIC1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 16.99 0 0 2.0169 0 0 677.3032998138457 0 677.3032998138457 0 10 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 2.0169 + + 5 + NaN NaN 148305.9 NaN 15305 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19189 79.625 NaN 442400 35 0 24884 0.261 + 24460 RYLDLFTSF 9 82 581.3004618451429 1160.5863707570857 2 581.3018188476562 MULTI HCD FTMS 0 0 0 19182 82492.921875 0.013629092145276779 36 -1.0122222900390625 7 Unmodified _RYLDLFTSF_ ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 40.23920728925047 0.06424668180817725 2 VY{M(Oxidation (M))|F}W{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 8 4 60.303 0 0 5.1959 0 0 65.10511803781067 0 65.10511803781067 0 37.37125054200234 0 0 0 1.774227503252014 0 0.2742275032520141 0 VY{M(Oxidation (M))|F}W{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.1959 - 265 + NaN NaN 157297.9 NaN 15306 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19190 79.628 NaN 561070 35 0 56714 0.261 + 7286 FTLASDFEI 9 66 521.7583074573846 1041.502061981569 2 521.7582397460938 MULTI HCD FTMS 0 0 0 19182 79369 0.13113892751641065 6 -0.18695068359375 8 Unmodified _FTLASDFEI_ ENSG00000205531|ENST00000380542|NAP1L4;ENST00000492594.6_1_11:2966840-2977015:-|nuORF;ENST00000528363.5_1_11:2975753-2985939:-|nuORF;nc|ENSG00000205531|Q99733-2|NAP1L4 25.399314129420986 0.14091189997036632 2 NAVP{M(Oxidation (M))|F} 5 7 32.251 0 0 3.0965 0 0 495.2207642294191 0 495.2207642294191 0 11.84447197927419 0 0 0 0.3807196863200844 0 0 0 NAVP{M(Oxidation (M))|F} 3.0965 - 236 + NaN NaN 171316.3 NaN 15307 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19191 79.631 NaN 79664 35 0 4499.7 0.261 + 31243 VVQVQRAN 8 47 457.2642972613403 912.5140415894806 2 457.2926025390625 MULTI HCD FTMS 0 0 0 19182 60256.15234375 0.5744104310982295 -5 0.12036895751953125 9 Unmodified _VVQVQRAN_ ENST00000542466.2_1_12:58120838-58121579:+|nuORF 4.75600775471527 0.5349361699807423 2 W 1 8 14.604 0 0 1.6004 0 0 708.4243331927994 0 708.4243331927994 0 13.494850021680094 0 0 0 0 0 0 0 W 1.6004 - 19 + NaN NaN 100859.1 NaN 15308 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19192 79.635 NaN 129770 35 0 29686 0.261 + -1 YGCVIQNV 8 47 476.7317451842722 NaN 0 476.7317810058594 PEAK HCD FTMS 0 0 0 19182 16559.7734375 0.8916740529346164 2 -0.06566619873046875 10 Carbamidomethyl (C) _YGC(Carbamidomethyl (C))VIQNV_ REV__ENSG00000136144|ENST00000378302|RCBTB1;REV__nc|ENSG00000136144|Q8NDN9-2|RCBTB1 9.347437153973935 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108897.6 NaN 15309 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19193 79.638 NaN 4595800 35 0 1033400 0.261 + 30145 VGLDPSPD 8 85 400.1940002441406 NaN 0 400.1940002441406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Unmodified _VGLDPSPD_ DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENSG00000179532|ENST00000254579|DNHD1;ENST00000532027.5_1_11:6568031-6569307:+|nuORF 9.347437153973935 0.38822285293237185 2 {I|L} 1 7 12.034 0 0 1.5111 0 0 528.1982980006661 152.07174097232658 680.2700389729927 0 0 0 0 0 0.805462187404089 0 0 0 + {I|L} 1.5111 + + 16 + NaN NaN 784009.8 NaN 15310 3881 19182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19195 79.643 NaN 349060 35 0 55184 0.327 + 12986 KYILVVPLI 9 58 529.3547712881787 1056.6949896431572 2 529.3547973632812 MULTI HCD FTMS 0 0 0 19194 88497.046875 0.448033322008196 4 -0.11473846435546875 1 Unmodified _KYILVVPLI_ ENSG00000070366|ENST00000263073|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-2|SMG6;nc|ENSG00000070366|Q86US8-3|SMG6 26.88365393820708 0.12808753336095696 2 VP{I|L}{I|L} 4 5 42.18 0 0 3.9917 0 0 616.3949467429738 0 616.3949467429738 0 38.20107520596089 0 0 0 1.3252574989159953 0 0 0 + VP{I|L}{I|L} 3.9917 + + 43 NaN NaN 145101.4 NaN 15311 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19196 79.647 NaN 261460 35 0 60654 0.261 -1 ILCYTWEMY 9 60 619.2671704920741 1236.5197880509481 2 619.2675170898438 MULTI HCD FTMS 0 0 0 19194 108706.890625 0.6303638759738386 -3 0.0845947265625 2 Oxidation (M) _ILCYTWEM(Oxidation (M))Y_ ENSG00000152034|ENST00000281806|MCHR2 4.75600775471527 0.31496297302216103 2 YS{M(Oxidation (M))|F} 3 -1 27.92 0 0 2.2579 0 0 821.3417835919937 0 821.3417835919937 0 19.960762528683702 0 0 0 0.9247425010840047 0 0 0 YS{M(Oxidation (M))|F} 2.2579 - 68 NaN NaN 129010.5 NaN 15312 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19197 79.651 NaN 620060 35 0 117010 0.261 -1 YLPLRCMAGG 10 67 577.2808688925379 NaN 0 577.281005859375 PEAK HCD FTMS 0 0 0 19194 215877.71875 0.5419168332875205 -7 0.1893768310546875 3 Carbamidomethyl (C),Oxidation (M) _YLPLRC(Carbamidomethyl (C))M(Oxidation (M))AGG_ ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8 14.838274106304384 0.3224471714378502 2 T 1 -1 7.232 0 0 0.62748 0 0 165.08682884163028 883.3917940729124 1048.4786229145427 0 0 0 0 0 0.3252574989159953 0 0 0 T 0.62748 - 23 + NaN NaN 186819.1 NaN 15313 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19198 79.654 NaN 274610 35 0 53648 0.261 + 26995 SYLPISPTF 9 47 512.7710473891786 1023.5275418451573 2 512.7711791992188 MULTI HCD FTMS 0 0 0 19194 74815.0078125 0.42821725663063875 -4 0.104095458984375 4 Unmodified _SYLPISPTF_ ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2 29.081581746732265 0.1154664336125038 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[{I|L}P][TP]{M(Oxidation (M))|F} 9 2 + 39.639 0 0 3.8728 3.8728 60.808 0 0 0 4.946049681132941 18.66968715561641 4.946049681132941 0 0 0.9247425010840047 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}S[{I|L}P][TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]S[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{[RE]|[WV]}{M(Oxidation (M))|F} 3.8728;3.8728;3.3134 -;+;- + 92 NaN NaN 128230.6 NaN 15314 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19199 79.658 NaN 177130 35 0 11322 0.261 + 17487 LYTALQQYF 9 65 573.795032808335 1145.57551268347 2 573.7952270507812 MULTI HCD FTMS 0 0 0 19194 40204.65625 0.11464232866636975 9 -0.2579345703125 5 Unmodified _LYTALQQYF_ ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;nc|ENSG00000089053|Q9UJX4-3|ANAPC5 45.69961567697781 0.039180348357221985 2 [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F} 9 0 + 56.041 0 0 4.8919 4.8919 86.749 0 0 0 4.230618743576073 34.860352775282344 4.230618743576073 9.208187539523749 0 1.6989700043360187 1.5228787452803376 0 0 + + [Y{I|L}]TA{I|L}QQY{M(Oxidation (M))|F};[Y{I|L}]TA{I|L}Q[AG]Y{M(Oxidation (M))|F};[YK][VP]{[DS]|[MA]|[CV]|TT}QY{M(Oxidation (M))|F};[YK][{I|L}P]{[MG]|[TS]}QY{M(Oxidation (M))|F};[YK][{I|L}P]{[QS]|[NT]}TY{M(Oxidation (M))|F};[YK][{I|L}P]{[QS]|[NT]}YT{M(Oxidation (M))|F} 4.8919;4.0881;2.5649;2.4374;1.7381;1.3017 +;-;-;-;-;- + 261 NaN NaN 118492.1 NaN 15315 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19200 79.661 NaN 92997 35 0 5081.3 0.263 + 21144 PPLMIPVF 8 55 457.2642972613403 912.5140415894806 2 457.2643127441406 MULTI HCD FTMS 0 0 0 19194 72899.2265625 0.694934451134706 -4 0.104095458984375 6 Unmodified _PPLMIPVF_ ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-5|SOX5 2.8892196856762586 0.5377058178582064 2 V 1 7 6.1536 0 0 0.67435 0 0 498.26921234318996 312.15009485416255 810.4193071973525 0 0 0 0 0 0.3054621874040891 0 0 0 + V 0.67435 + + 10 + NaN NaN 101151.1 NaN 15316 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19201 79.664 NaN 234950 35 0 14531 0.261 + 35648 YYIFIPSKF 9 59 589.3186103341241 NaN 0 589.3194580078125 PEAK HCD FTMS 0 0 0 19194 39572.546875 0.5226937941639709 7 -0.20311737060546875 7 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 2 {I|L} 1 8 16.237 0 0 1.38 0 0 326.1266651339893 734.3885297034209 1060.5151948374103 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.38 + + 22 + NaN NaN 128244 NaN 15317 3882 19194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19203 79.669 NaN 846670 35 0 99223 0.327 + 13578 KYPENFFLL 9 88 585.8131605635726 1169.6117681939452 2 585.8137817382812 MULTI HCD FTMS 0 0 0 19202 496387.84375 0.0025232761339628517 158 -4.4146881103515625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.009787749748478139 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 76.301 0 0 6.5236 6.5236 89.445 0 0 0 12.974921663574293 55.154914809758125 12.974921663574293 9.208187539523749 0 1.8539171939081172 0 0.3252574989159953 1.2625305739907815 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PNE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PNE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[W{I|L}]{[MS]|[{M(Oxidation (M))|F}A]}{[ET]|[MV]}YK{I|L};[YV]{[MS]|[{M(Oxidation (M))|F}A]}H[RH]K{I|L} 6.5236;5.7364;5.5629;5.5524;4.7651;4.5916;4.5525;3.5812;1.4729;1.1719 +;-;-;-;-;-;-;-;-;- + 717 NaN NaN 234705.5 NaN 15318 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19204 79.674 NaN 653100 35 0 70072 0.261 + 19213 NIQKGGLLDF 10 91 552.8057722033836 NaN 0 552.7900390625 PEAK HCD FTMS 0 0 0 19202 45520.96875 0.8399252372661611 5 -0.13742828369140625 2 Unmodified _NIQKGGLLDF_ REV__ENSG00000186417|ENST00000335449|GLDN;REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN 10.073929032068715 0.33156240198919784 2 D{I|L}V{M(Oxidation (M))|F}A{I|L}D 7 -1 21.419 0 0 1.9408 0 0 165.11065998347857 162.0558260553344 327.166486038813 0 0 0 0 0 0 0 0.3494850021680094 0 D{I|L}V{M(Oxidation (M))|F}A{I|L}D 1.9408 - 428 + NaN NaN 190498.6 NaN 15319 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19205 79.677 NaN 539580 35 0 34122 0.261 + 20930 PLAFLVIMA 9 88 487.79076122415506 973.5669695151101 2 487.79071044921875 MULTI HCD FTMS 0 0 0 19202 243447.640625 0.2736667049807514 32 -0.8809280395507812 3 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 9.347437153973935 0.2795965555214564 2 APAQS 5 8 15.764 0 0 1.6192 0 0 61.05312553797109 455.2677276769288 516.3208532148999 0 0 0 0 0 0.3252574989159953 0 0 0.3494850021680094 APAQS 1.6192 - 179 + NaN NaN 170830.9 NaN 15320 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19206 79.68 NaN 985900 35 0 233030 0.261 + 26060 SPEYFEPIL 9 65 547.773893977617 1093.533235022034 2 547.7740478515625 MULTI HCD FTMS 0 0 0 19202 377109.8125 0.34252237412874387 -5 0.13031768798828125 4 Unmodified _SPEYFEPIL_ ENSG00000104756|ENST00000221200|KCTD9;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF 61.357469665136826 0.01568246967499496 2 Y{M(Oxidation (M))|F}EP{I|L}{I|L} 6 3 60.935 0 0 5.5723 0 0 313.126268455275 0 313.126268455275 0 46.95554701812867 0 0 0 1.75 0 0.7059771852360797 0 + Y{M(Oxidation (M))|F}EP{I|L}{I|L} 5.5723 + + 219 NaN NaN 244146.3 NaN 15321 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19207 79.684 NaN 457370 35 0 77892 0.261 + 15567 LPDQTLPIL 9 58 505.30011340610815 1008.5856738790163 2 505.3002014160156 MULTI HCD FTMS 0 0 0 19202 140493.484375 0.8091013546327385 1 -0.03282928466796875 5 Unmodified _LPDQTLPIL_ ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671|PUM1 36.12702656103203 0.08312389501731911 2 {I|L}P{I|L}{I|L} 4 5 43.686 0 0 4.3314 0 0 554.2677741313515 0 554.2677741313515 0 29.081531501239297 0 0 0 1.1747425010840047 0 0 0 + {I|L}P{I|L}{I|L} 4.3314 + + 97 NaN NaN 154333.6 NaN 15322 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19208 79.687 NaN 349160 35 0 29892 0.261 + 31865 VYMSCFPFFI 10 67 627.2900664307234 1252.5655799282467 2 627.29052734375 MULTI HCD FTMS 0 0 0 19202 95313.84375 0.19057514831379924 -12 0.32039642333984375 6 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 34.10243960390752 0.1965851268881605 2 EDVVTM{I|L} 7 -1 67.598 0 0 5.3968 0 0 447.179979392775 0 447.179979392775 0 48.81539589761106 0 0 0 1.5189301784845295 0 1.1307196863200843 0 EDVVTM{I|L} 5.3968 - 282 NaN NaN 130583.5 NaN 15323 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19209 79.69 NaN 332570 35 0 46268 0.262 + 27986 TFISYSVTF 9 78 532.7684082032349 1063.5222634732697 2 532.7683715820312 MULTI HCD FTMS 0 0 0 19202 117095.1796875 0.8664178395266693 4 -0.12128448486328125 7 Unmodified _TFISYSVTF_ ENSG00000042286|ENST00000307864|AIFM2;nc|ENSG00000042286|Q9BRQ8-2|AIFM2 107.1870275148908 0.00340162908551068 2 [{M(Oxidation (M))|F}T]{I|L}SYSVT{M(Oxidation (M))|F} 9 0 + 89.179 0 0 8.3853 8.3853 90.643 0 0 0 5.6424927368725974 80.11107503885448 5.6424927368725974 6.505149978319906 0 3.004432191740108 0 1.2302046884880937 0 + + [{M(Oxidation (M))|F}T]{I|L}SYSVT{M(Oxidation (M))|F};[YV]VSYSVT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VS][YT]VT{M(Oxidation (M))|F};[YV][TA][YT]VT{M(Oxidation (M))|F} 8.3853;7.7736;3.9639;3.3523 +;-;-;- + 600 NaN NaN 143801.9 NaN 15324 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19210 79.694 NaN 234140 35 0 109940 0.261 + 17964 MIVKKLPY 8 44 496.3039204652466 990.5932879972933 2 496.3042297363281 MULTI HCD FTMS 0 0 0 19202 63325.23828125 0.7081879644145973 1 -0.03282928466796875 8 Unmodified _MIVKKLPY_ CLCNKA|p.I524M|1|0.22|ENSG00000186510|chr1:16030624-16030624|C/G|missense_variant 0.7936320650641473 0.540814922690045 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 5 8.9524 0 0 0.90374 0 0 0 630.4175732358276 630.4175732358276 3.4678748622465623 0 0 0 0 0 0 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 0.90374 - 24 NaN NaN 117205.1 NaN 15325 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19211 79.697 NaN 379790 35 0 35996 0.261 -1 EMQLKDEME 9 68 592.7453604949118 1183.4761680566235 2 592.7449951171875 MULTI HCD FTMS 0 0 0 19202 75895.8046875 0.412095793813114 -7 0.18603515625 9 2 Oxidation (M) _EM(Oxidation (M))QLKDEM(Oxidation (M))E_ ENSG00000067900|ENST00000399799|ROCK1;ROCK1-DCC|1|fusion 6.723162845929126 0.3000504726104499 2 VY[YK]W[{M(Oxidation (M))|F}E] 7 -1 20.15 0 0 1.7026 0 0 150.02714569509845 0 150.02714569509845 0 15.7128852219801 0 0 0 0 0 0.805462187404089 0 VY[YK]W[{M(Oxidation (M))|F}E] 1.7026 - 85 + NaN NaN 147668.5 NaN 15326 3883 19202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19213 79.702 NaN 4950600 35 0 460480 0.327 + 17265 LYPLTNYTF 9 113 566.2895386158357 1130.5645242984713 2 566.2898559570312 MULTI HCD FTMS 0 0 0 19212 1898042.125 0.4643075186243299 -5 0.143646240234375 1 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 223.05949007766432 5.22265287935879E-24 2 Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F} 9 2 + 122.82 0 0 10.864 10.864 92.415 0 0 0 6.1438789198107315 6.1438789198107315 6.1438789198107315 6.1438789198107315 0 3.305462187404089 1.5228787452803376 1.9163865622122676 0.7059771852360797 Y{I|L}P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};Y{I|L}P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]PSQ{I|L}YT{M(Oxidation (M))|F};[{I|L}P]T[Y{I|L}]NYT{M(Oxidation (M))|F};[{I|L}P]YSQ{I|L}YT{M(Oxidation (M))|F};[YT]N[{I|L}P]{I|L}YT{M(Oxidation (M))|F} 10.864;10.32;9.4247;9.3015;8.8988;7.8801;7.4635;7.1232;6.4447;6.3877 -;+;-;-;-;-;-;-;-;- + 8130 + NaN NaN 734442.8 NaN 15327 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19214 79.706 NaN 3520600 35 0 606140 0.261 + 32282 VYTVVDEMFL 10 86 616.2994505061508 1230.5843480791016 2 616.2996215820312 MULTI HCD FTMS 0 0 0 19212 1323697 0.3544981795337697 -6 0.16314697265625 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 126.3 0 0 10.263 10.263 96.362 0 0 0 20.993624753846092 67.13365874219218 20.993624753846092 14.330984399557423 0 3.1861818737241734 1.5228787452803376 2.885151878060192 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[YV]VTVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]YEDV{I|L}SM{I|L};[Y{I|L}]SVVDEYM{I|L};[YV]VTVDEYM{I|L} 10.263;9.0986;8.7788;8.7348;8.3929;8.0839;7.8828;7.5993;7.5739;7.5703 +;-;-;-;-;-;-;-;-;- + 3890 NaN NaN 630971.9 NaN 15328 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19215 79.71 NaN 2092600 35 0 414100 0.261 + 4547 EYLIVFPKL 9 79 561.3339523652179 1120.6533517972357 2 561.3342895507812 MULTI HCD FTMS 0 0 0 19212 565394.5625 0.08601121039276118 8 -0.22504425048828125 3 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 126.56589448801843 0.0008132384440316759 2 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 99.031 0 0 8.8369 8.8369 96.989 0 0 0 22.281381439366186 13.46787486224656 13.46787486224656 32.23197507588033 0 2.8494850021680094 1.3979400086720375 2.829689690656103 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}V{M(Oxidation (M))|F}PK{I|L} 8.8369;5.9607 +;- + 739 NaN NaN 402101.7 NaN 15329 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19216 79.713 NaN 1812700 35 0 657930 0.261 + 17313 LYPQFMFHL 9 89 598.3021471797576 1194.5897414263152 2 598.3023681640625 MULTI HCD FTMS 0 0 0 19212 491320.125 0.1636894705055767 6 -0.1702880859375 4 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 92.8221339359638 0.0044520161739443126 2 {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 93.611 0 0 7.8362 7.8362 93.421 0 0 0 60.52887198244135 9.009461452434238 9.009461452434238 12.703037561203843 0 2.504432191740108 2 0 0.3494850021680094 + + {I|L}YPQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YP[AG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}YA[PG]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}]PQ{M(Oxidation (M))|F}M[H{I|L}]{M(Oxidation (M))|F};{I|L}[QP]Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{I|L}Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{I|L}[QP]{M(Oxidation (M))|F}YM{M(Oxidation (M))|F}H{I|L};[QP]{I|L}Y{M(Oxidation (M))|F}M[H{I|L}]{M(Oxidation (M))|F};{I|L}WW{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}DG{M(Oxidation (M))|F} 7.8362;6.7729;6.5872;6.2372;4.6008;4.1963;3.8113;3.6256;2.1749;1.8954 +;-;-;+;-;-;-;-;-;- + 1984 + NaN NaN 370678.8 NaN 15330 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19217 79.717 NaN 547530 35 0 24049 0.263 + 30905 VQVAGKAER 9 79 479.2775341566531 956.5405153801062 2 479.2774353027344 MULTI HCD FTMS 0 0 0 19212 480619.1875 0.48012322021351944 33 -0.913726806640625 5 Unmodified _VQVAGKAER_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6 6.2057823575117 0.30397260197431997 2 Q 1 8 12.034 0 0 1.2581 0 0 458.2738206295401 367.19694026098074 825.4707608905209 0 0 0 0 0 0.805462187404089 0 0 0 + Q 1.2581 + + 60 + NaN NaN 173606.2 NaN 15331 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19218 79.72 NaN 412500 35 0 49040 0.261 -1 YCSAFEEAAL 10 85 580.7506814476492 1159.4868099620983 2 580.7508544921875 MULTI HCD FTMS 0 0 0 19212 40509.72265625 0.3729133211230656 1 -0.029510498046875 6 Carbamidomethyl (C) _YC(Carbamidomethyl (C))SAFEEAAL_ ENSG00000139636|ENST00000267102|LMBR1L;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;ENST00000552141.5_1_12:49495806-49497560:-|nuORF;ENST00000552879.5_1_12:49494935-49496886:-|nuORF;nc|ENSG00000139636|Q6UX01-2|LMBR1L;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-5|LMBR1L 9.38312468134398 0.42334543440173333 2 YY{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{I|L} 6 -1 52.229 0 0 4.5045 0 0 0 292.1273592584594 292.1273592584594 30.189549981487076 0 0 0 0 1.610924374808178 2 0 0 YY{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{I|L} 4.5045 - 185 + NaN NaN 158342.3 NaN 15332 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19219 79.723 NaN 188370 35 0 45423 0.261 + 20105 NYIPRFWTF 9 44 622.3162503270299 1242.6179477208598 2 622.3169555664062 MULTI HCD FTMS 0 0 0 19212 44349.87109375 0.003412909723985222 72 -2.0051803588867188 7 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 32.78568957990786 0.09846250359632436 2 [YN]{I|L} 3 6 41.254 0 0 3.32 0 0 0 849.4053825714085 849.4053825714085 13.634993639681312 0 0 0 0 1 1.6989700043360187 0 0.3807196863200844 + [YN]{I|L} 3.32 + + 24 NaN NaN 116940.8 NaN 15333 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19220 79.727 NaN 216840 35 0 18223 0.262 + 11391 IYPDSFTVL 9 63 527.7766253954015 1053.538697857603 2 527.7769165039062 MULTI HCD FTMS 0 0 0 19212 83713.2890625 0.29792985301724534 6 -0.1702880859375 8 Unmodified _IYPDSFTVL_ ENSG00000111832|ENST00000466444|RWDD1 71.13359017698441 0.008721403657255008 2 N{M(Oxidation (M))|F}TV{I|L} 5 5 37.339 0 0 3.5441 0 0 461.2190113751969 0 461.2190113751969 0 22.85789402675583 0 0 0 1.110924374808178 0 0.4247425010840047 0 N{M(Oxidation (M))|F}TV{I|L} 3.5441 - 150 NaN NaN 137342.4 NaN 15334 3884 19212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19222 79.731 NaN 1595300 35 0 97794 0.327 + 22734 QYEIWRELF 9 108 642.3246241452517 1282.6346953573034 2 642.3246459960938 MULTI HCD FTMS 0 0 0 19221 521160.0625 0.703046851319979 2 -0.0589447021484375 1 Unmodified _QYEIWRELF_ ENSG00000168092|ENST00000527958|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-2|PAFAH1B2;nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-4|PAFAH1B2 189.73149822037072 4.1025052375754644E-13 2 [YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F} 9 0 + 108.5 0 0 8.4593 8.4593 95.312 0 0 0 17.67165181906212 11.505149978319906 11.505149978319906 17.67165181906212 0 2.4916440611282624 1 2.4604093769761874 2.8169015600442577 + + [YQ]E{I|L}WRE{I|L}{M(Oxidation (M))|F};[YE]Q{I|L}WRE{I|L}{M(Oxidation (M))|F};[YE][AG]{I|L}WRE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YQ]WRE{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[SG]WRE{I|L}{M(Oxidation (M))|F};{[RE]|[WV]}[{M(Oxidation (M))|F}T]{[DA]|[EG]}RE{I|L}{M(Oxidation (M))|F};{[RE]|[WV]}[{M(Oxidation (M))|F}T]W[VG]E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YQ]W[VG]E{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[SG]W[VG]E{I|L}{M(Oxidation (M))|F};EYQ{I|L}WRE{I|L}{M(Oxidation (M))|F} 8.4593;7.0815;5.3115;4.8866;4.7892;4.2661;4.2661;4.1687;4.0747;3.3178 +;-;-;-;-;-;-;-;-;- + 5687 NaN NaN 340037.8 NaN 15335 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19223 79.736 NaN 173020 35 0 7545.7 0.263 -1 0 64 501.29047871913184 500.28320225253185 1 501.2906799316406 MULTI HCD FTMS 0 0 0 19221 149634.3125 0.317320260658262 34 -0.936676025390625 2 NaN NaN 2 V 1 -1 3.4949 0 0 0.69857 0 0 174.08958150233497 224.09710107974846 398.18668258208345 0 0 0 0 0 0 0 0 0 V 0.69857 - 6 + NaN NaN 115102.8 NaN 15336 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19224 79.739 NaN 239790 35 0 19661 0.261 + 16864 LYETPAPACI 10 58 539.26788511357 1076.5212172939398 2 539.2684936523438 MULTI HCD FTMS 0 0 0 19221 64308.828125 0.003301361315297404 147 -4.0997314453125 3 Unmodified _LYETPAPACI_ REV__ENST00000497036.5_1_22:50688078-50688743:-|nuORF 10.823927491677226 0.4098686510432541 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3407003063393 0 832.3407003063393 0 4.798187706630159 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 - 57 NaN NaN 129668.5 NaN 15337 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19225 79.743 NaN 217540 35 0 9537.1 0.261 + 29670 VASLLNSVRS 10 78 523.3036635074011 1044.592774081602 2 523.3034057617188 MULTI HCD FTMS 0 0 0 19221 132550.046875 0.707685144957278 -4 0.1280059814453125 4 Unmodified _VASLLNSVRS_ ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C 4.5288652416199255 0.4513317009562028 2 YG{M(Oxidation (M))|F} 3 10 14.157 0 0 1.3552 0 0 659.4314409290615 0 659.4314409290615 0 8.672137691284407 0 0 0 0 0 0 0 YG{M(Oxidation (M))|F} 1.3552 - 98 + NaN NaN 122931.5 NaN 15338 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19226 79.746 NaN 489120 35 0 166340 0.261 + 2440 DPTSSSPCPLL 11 81 558.7649610565885 1115.515369179977 2 558.76611328125 MULTI HCD FTMS 0 0 0 19221 74950.640625 0.4943015865164649 -2 0.06233978271484375 5 Unmodified _DPTSSSPCPLL_ REV__ENST00000553842.1_1_14:102290223-102302732:+|nuORF 27.628801355627647 0.21662447369784368 2 SPEY{M(Oxidation (M))|F}E 6 -1 51.107 0 0 4.5815 0 0 0 360.18984220668847 360.18984220668847 16.070006276765483 0 0 0 0 1.9247425010840047 0 0 0 SPEY{M(Oxidation (M))|F}E 4.5815 - 131 + NaN NaN 159858.9 NaN 15339 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19227 79.749 NaN 137960 35 0 6486.5 0.261 + -1 IMVQVNIF 8 67 490.26835251876264 978.5221521043253 2 490.7688903808594 MULTI HCD FTMS 0 0 0 19221 35241.18359375 0.6305052320425988 3 -0.0750885009765625 6 Oxidation (M) _IM(Oxidation (M))VQVNIF_ REV__ENST00000333421.6_1_9:74481570-74481609:-|nuORF 5.760428011301431 0.5334459684533844 2 {I|L}DSP 4 -1 14.034 0 0 1.4342 0 0 130.09455408244827 433.20490442447505 563.2994585069233 0 0 0 0 0 0 0 0.28872548999643577 0 {I|L}DSP 1.4342 - 70 + NaN NaN 114603.2 NaN 15340 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19228 79.753 NaN 84432 35 0 6428.2 0.261 + 10830 ITMLEAALGL 10 54 516.2920071314169 1030.5694613296337 2 516.2564086914062 MULTI HCD FTMS 0 0 0 19221 9015.205078125 0.22284588610519182 3 -0.0750885009765625 7 Unmodified _ITMLEAALGL_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 6.723162845929126 0.4397169348982109 2 {I|L}{M(Oxidation (M))|F} 2 8 16.454 0 0 1.5966 0 0 0 767.3728121393186 767.3728121393186 9.463950151760656 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.5966 - 14 + NaN NaN 101126.9 NaN 15341 3885 19221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19230 79.758 NaN 1310400 35 0 157820 0.327 -1 YYMDYLAAL 9 113 569.7597499412319 1137.5049469492637 2 569.7597045898438 MULTI HCD FTMS 0 0 0 19229 672719.5 0.9959788906564727 4 -0.11460113525390625 1 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 34.10243960390752 0.09241788333544565 2 {I|L}AA{I|L} 4 -1 46.938 0 0 4.1264 0 0 751.2519247430561 0 751.2519247430561 0 30.95220566797657 0 0 0 1.5 0 0 0 {I|L}AA{I|L} 4.1264 + + 314 NaN NaN 293702.2 NaN 15342 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19231 79.762 NaN 1177200 35 0 96062 0.261 + 17100 LYLENIDEF 9 86 578.2821141426282 1154.5496753520563 2 578.2822265625 MULTI HCD FTMS 0 0 0 19229 394265.8125 0.9629899547292275 -1 0.02617645263671875 2 Unmodified _LYLENIDEF_ ENSG00000077514|ENST00000263681|POLD3;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant 168.65858592105317 4.556178112754322E-09 2 [Y{I|L}]{I|L}EN{I|L}DE{M(Oxidation (M))|F} 9 0 + 98.175 0 0 8.5033 8.5033 95.715 0 0 0 22.064404002582023 74.61864661551088 22.064404002582023 20.757659435244733 0 2.586696871556164 1.6989700043360187 0.5387254899964358 1.1549471895720984 + + [Y{I|L}]{I|L}EN{I|L}DE{M(Oxidation (M))|F};[Y{I|L}]{I|L}EGG{I|L}DE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}K{I|L}DE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]D{I|L}K{I|L}DE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}P]{I|L}{M(Oxidation (M))|F} 8.5033;6.7054;5.8298;5.7215;1.4811 +;-;-;-;- + 924 NaN NaN 271842 NaN 15343 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19232 79.766 NaN 718360 35 0 82075 0.261 + 21492 PYFNAPVYL 9 76 542.279458511811 1082.5443640904218 2 542.27978515625 MULTI HCD FTMS 0 0 0 19229 231170.0625 0.14758180994194678 8 -0.22180938720703125 3 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 67.34385681178166 0.00994769994983633 2 [Y{I|L}]MNAPVY 8 3 50.295 0 0 4.646 0 0 0 128.07424463979456 128.07424463979456 24.096784839493644 0 0 0 0 1.6989700043360187 1.2218487496163564 0 1.055462187404089 [Y{I|L}]MNAPVY 4.646 - 444 NaN NaN 217393.5 NaN 15344 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19233 79.769 NaN 276820 35 0 22202 0.261 + 2872 DYPRYLFEI 9 65 608.3057717570529 1214.5969905809056 2 608.3060913085938 MULTI HCD FTMS 0 0 0 19229 132237.75 0.1805805365650571 8 -0.22180938720703125 4 Unmodified _DYPRYLFEI_ ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 41.95555342248728 0.056367691549927025 2 {[YD]|[{M(Oxidation (M))|F}M]}[RP]{I|L}Y{M(Oxidation (M))|F}E{I|L} 9 2 + 52.91 0 0 4.3562 4.3562 90.599 0 0 0 18.18513709057612 28.694028404633155 18.18513709057612 50.33932200095428 0 1.305462187404089 2 0.2742275032520141 0 {[YD]|[{M(Oxidation (M))|F}M]}[RP]{I|L}Y{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}HHKYK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4.3562;0.21164 -;- 201 NaN NaN 136039.5 NaN 15345 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19234 79.772 NaN 443750 35 0 76355 0.261 -1 IYCMAQLLD 9 73 563.7692228881461 1125.5238928430922 2 563.7694702148438 MULTI HCD FTMS 0 0 0 19229 113571.1015625 0.5001055453775287 -2 0.05568695068359375 5 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))MAQLLD_ ENSG00000099985|ENST00000215781|OSM 28.486842064014134 0.11819662193267319 2 Y{I|L}D{I|L} 4 -1 39.24 0 0 3.4864 0 0 603.2528553693375 0 603.2528553693375 0 12.004412890910956 0 0 0 0.8807196863200843 0 0 0 Y{I|L}D{I|L} 3.4864 - 132 NaN NaN 169118.4 NaN 15346 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19235 79.776 NaN 543020 35 0 56831 0.261 + -1 LMDNNCHDL 9 94 574.2291112072212 1146.4436694812423 2 574.2293090820312 MULTI HCD FTMS 0 0 0 19229 104364.5703125 1 0 0 6 Carbamidomethyl (C),Oxidation (M) _LM(Oxidation (M))DNNC(Carbamidomethyl (C))HDL_ REV__ENSG00000137270|ENST00000259803|GCM1 4.3292370932331545 0.3181982124262546 2 YT{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.2851 0 0 717.2539244634673 0 717.2539244634673 0 4.754318085092635 0 0 0 0 0 0 0 YT{M(Oxidation (M))|F} 2.2851 - 862 + NaN NaN 177787.9 NaN 15347 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19236 79.779 NaN 128500 35 0 21226 0.261 + 16577 LVEPTISDL 9 40 493.77373842085865 985.5329239085173 2 493.77374267578125 MULTI HCD FTMS 0 0 0 19229 43711.18359375 0.6305101288430898 -2 0.05568695068359375 7 Unmodified _LVEPTISDL_ REV__ENSG00000132305|ENST00000410111|IMMT;REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF;REV__ENST00000490238.5_1_2:86385703-86389088:-|nuORF;REV__IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;REV__nc|ENSG00000132305|Q16891-2|IMMT;REV__nc|ENSG00000132305|Q16891-3|IMMT;REV__nc|ENSG00000132305|Q16891-4|IMMT 18.1463463914782 0.20357593197100715 2 {I|L}SD{I|L} 4 -1 46.938 0 0 4.7627 0 0 539.2954920248594 0 539.2954920248594 0 44.17399041687222 0 0 0 1.5 0 0 0 {I|L}SD{I|L} 4.7627 + + 24 NaN NaN 105530.9 NaN 15348 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19237 79.782 NaN 71315 35 0 10089 0.261 -1 0 37 437.7092130316432 873.4038731300864 2 437.70928955078125 MULTI HCD FTMS 0 0 0 19229 36685.59375 0.36325174236068036 6 -0.1693572998046875 8 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.7729 0 0 708.325364684577 0 708.325364684577 0 11.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7729 - 12 + NaN NaN 95353.2 NaN 15349 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19238 79.785 NaN 219560 35 0 28009 0.261 + 21041 PLSRKHGG 8 70 426.2460041809561 850.4774554287122 2 426.24609375 MULTI HCD FTMS 0 0 0 19229 60112.19140625 0.6059303978139647 -1 0.02617645263671875 9 Unmodified _PLSRKHGG_ ENSG00000142168|ENST00000270142|SOD1 2.8892196856762586 0.5377058178582064 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 3 8 22.192 0 0 2.6093 0 0 0 440.2706737727154 440.2706737727154 4.655593552960934 0 0 0 0 0 1.5228787452803376 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 2.6093 - 31 NaN NaN 122346 NaN 15350 3886 19229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19240 79.79 NaN 101600 35 0 5604.6 0.327 -1 MILNLLIF 8 63 509.8037904894488 1017.5930280456976 2 509.804443359375 MULTI HCD FTMS 0 0 0 19239 33468.1171875 0.07821821454018651 36 -0.9924392700195312 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MILNLLIF_ ENST00000476203.2_1_1:78272729-78272759:+|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5217 0 0 852.514962105071 0 852.514962105071 0 12.720340221751378 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5217 + + 21 + NaN NaN 108139.3 NaN 15351 3887 19239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19241 79.795 NaN 334390 35 0 40797 0.261 -1 MILLIIPSF 9 76 531.8167479852187 1061.6189430372374 2 531.8177490234375 MULTI HCD FTMS 0 0 0 19239 52323.48046875 0.6114813020576739 -8 0.2321014404296875 2 Oxidation (M) _M(Oxidation (M))ILLIIPSF_ ENST00000446120.6_1_1:95323025-95330375:+|nuORF 5.230669730166228 0.3113646817964458 2 TDD{I|L}Y 5 -1 23.271 0 0 2.192 0 0 131.14997366919073 320.1977938287719 451.34776749796265 0 0 0 0 0 0 0 0.3807196863200844 0 TDD{I|L}Y 2.192 - 164 + NaN NaN 142805.3 NaN 15352 3887 19239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19242 79.798 NaN 155710 35 0 9152.3 0.261 -1 TKQPIMVF 8 69 490.26835251876264 978.5221521043253 2 490.2693176269531 MULTI HCD FTMS 0 0 0 19239 10698.810546875 0.0892609678995666 18 -0.5010528564453125 3 Oxidation (M) _TKQPIM(Oxidation (M))VF_ DNM3-RFWD2|1|fusion;ENSG00000143207|ENST00000367669|COP1;ENST00000461830.6_1_1:175958496-176012322:-|nuORF;nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-3|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1 12.531546534597751 0.5015908124873912 2 [KT]{[QG]|[NA]}G{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F} 9 -1 [KT]{[QG]|[NA]}G{[QD]|[EN]|[WG]|[KD]|[RS]}V + + 16.99 -2.486 -0.30561 1.7363 1.7363 59.735 0 0 0 0 5.30726239543597 0 0 0 0 0 0 0 [KT]{[QG]|[NA]}G{[QD]|[EN]|[WG]|[KD]|[RS]}V{M(Oxidation (M))|F} 1.7363 - 99 + NaN NaN 116461.5 NaN 15353 3887 19239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19243 79.802 NaN 54452 35 0 5144.5 0.261 -1 0 43 404.7342854336153 NaN 0 404.671875 PEAK HCD FTMS 0 0 0 19239 7423.1318359375 0.3771006406450425 -2 0.0589447021484375 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.67924 0 0 173.2485258459431 484.13691126041255 657.3854371063557 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.67924 - 1 + NaN NaN 95763.4 NaN 15354 3887 19239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19245 79.807 NaN 1511400 35 0 354680 0.327 + 26061 SPEYFEPIL 9 60 547.773893977617 1093.533235022034 2 547.7741088867188 MULTI HCD FTMS 0 0 0 19244 1100978.625 1 0 0 1 Unmodified _SPEYFEPIL_ ENSG00000104756|ENST00000221200|KCTD9;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF 78.14939416004806 0.006451203201226903 2 Y{M(Oxidation (M))|F}EP{I|L}{I|L} 6 3 69.998 0 0 6.4011 0 0 313.12715346504064 0 313.12715346504064 0 56.5030565586067 0 0 0 2.2302046884880937 0 0.805462187404089 0 + Y{M(Oxidation (M))|F}EP{I|L}{I|L} 6.4011 + + 152 NaN NaN 314077.3 NaN 15355 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19246 79.811 NaN 938950 35 0 83014 0.261 + 13579 KYPENFFLL 9 95 585.8131605635726 1169.6117681939452 2 585.81396484375 MULTI HCD FTMS 0 0 0 19244 508273.09375 0.002583692133364896 163 -4.5120086669921875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.009787749748478139 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 57.827 0 0 4.9442 4.9442 86.856 0 0 0 3.534379787058178 29.718283396941786 3.534379787058178 9.208187539523749 0 2.2179001828205482 0 0 1.0576556684809653 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{I|L}{M(Oxidation (M))|F}{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[KS]EK{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{I|L}{I|L}{M(Oxidation (M))|F} 4.9442;4.1569;3.3802;2.7911;2.6081;2.5929;1.8208;1.2272;1.1331;0.45509 +;-;-;-;-;-;-;-;-;- + 1159 NaN NaN 236280.3 NaN 15356 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19247 79.814 NaN 699280 35 0 55078 0.261 + 21493 PYFNAPVYL 9 69 542.279458511811 1082.5443640904218 2 542.7911987304688 MULTI HCD FTMS 0 0 0 19244 98661.515625 0.1029879895729655 10 -0.28438568115234375 3 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 60.38955033654506 0.017036522530421875 2 [YT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A[VP]Y{I|L} 9 3 + 45.282 0 0 4.1829 4.1829 88.638 0 0 0 0.7378621416091846 18.60801848024778 0.7378621416091846 19.669081132677704 0 1.1747425010840047 0 0.3494850021680094 0.9916440611282626 [YT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}A[VP]Y{I|L};[Y{I|L}]W{[NV]|[RG]}[{M(Oxidation (M))|F}E]{I|L};[Y{I|L}]MN[H{I|L}][RH];[Y{I|L}]MGG[H{I|L}][RH] 4.1829;2.366;0.97799;0.1224 -;-;-;- 410 NaN NaN 194474 NaN 15357 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19248 79.818 NaN 380230 35 0 43908 0.261 + 22149 QKFFELLQ 8 58 526.7922891219899 1051.5700253107798 2 528.2938232421875 MULTI HCD FTMS 0 0 0 19244 123031.9609375 0.5640692338330697 -7 0.203094482421875 4 Unmodified _QKFFELLQ_ REV__ENSG00000153914|ENST00000334121|SREK1;REV__ENST00000520580.5_1_5:65455027-65458421:+|nuORF;REV__nc|ENSG00000153914|Q8WXA9|SREK1 18.13498045792455 0.4603629008820478 2 KQ{I|L}{I|L}D 5 -1 33.188 0 0 3.156 0 0 0 451.20871912174067 451.20871912174067 13.02378753635658 0 0 0 0 0 0 0 0 KQ{I|L}{I|L}D 3.156 - 205 + NaN NaN 144036.6 NaN 15358 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19249 79.821 NaN 482650 35 0 48101 0.261 + 5048 FDPSKERLL 9 88 552.8057722033836 NaN 0 552.7901611328125 PEAK HCD FTMS 0 0 0 19244 8984.197265625 0.16577094528499184 10 -0.28438568115234375 5 Unmodified _FDPSKERLL_ ENSG00000173581|ENST00000586790|CCDC106 8.593279151180031 0.2536050107310812 2 {M(Oxidation (M))|F}D{I|L}VH{I|L}D 7 6 29.69 0 0 2.6903 0 0 99.10237763020298 162.05568872623283 261.1580663564358 0 0 0 0 0 0 0 1.0629529932484498 0 {M(Oxidation (M))|F}D{I|L}VH{I|L}D 2.6903 - 341 + NaN NaN 159040.4 NaN 15359 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19250 79.824 NaN 279560 35 0 57567 0.261 + 26996 SYLPISPTF 9 41 512.7710473891786 1023.5275418451573 2 512.7713623046875 MULTI HCD FTMS 0 0 0 19244 97874.9765625 0.5602051671426712 2 -0.0656890869140625 6 Unmodified _SYLPISPTF_ ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2 56.17704186161178 0.022929533404884107 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}S[TP]{M(Oxidation (M))|F} 9 0 + 55.168 0 0 5.39 5.39 84.844 0 0 0 4.093020841151613 47.72038431917139 4.093020841151613 4.731975075880328 0 1.3807196863200843 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}S[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}S{I|L}P[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{[RE]|[WV]}{M(Oxidation (M))|F} 5.39;4.9276;4.8306 +;-;- + 118 NaN NaN 128445.2 NaN 15360 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19251 79.828 NaN 387030 35 0 58183 0.261 + 10583 IPLYIDDTL 9 69 531.7894812657144 1061.5644095982286 2 531.7899169921875 MULTI HCD FTMS 0 0 0 19244 134491.984375 0.5777677972048414 -2 0.04891204833984375 7 Unmodified _IPLYIDDTL_ ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2 104.79918948944588 0.003791450360204016 2 Y{I|L}DDT{I|L} 6 3 60.257 0 0 5.6763 0 0 323.22017104316564 0 323.22017104316564 0 21.33823530010693 0 0 0 1.9634679910804405 0 0.4247425010840047 0 + Y{I|L}DDT{I|L} 5.6763 + + 463 NaN NaN 154528.5 NaN 15361 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19252 79.831 NaN 188630 35 0 33331 0.261 + 34108 YNNMFWKDK 9 47 623.2890813286978 1244.5636097241954 2 623.2901000976562 MULTI HCD FTMS 0 0 0 19244 36524.8125 0.4996530347569079 -12 0.32346343994140625 8 Unmodified _YNNMFWKDK_ tr|U7SSP6|U7SSP6_FUSNUProlineiminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01336PE=3SV=1 9.38312468134398 0.279288223203164 2 [YN]{I|L}[KG]D 6 5 36.215 0 0 2.9099 0 0 0 551.2195294842141 551.2195294842141 17.63174048436923 0 0 0 0 0.805462187404089 1.6989700043360187 0 0 [YN]{I|L}[KG]D 2.9099 - 114 NaN NaN 114472.8 NaN 15362 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19253 79.834 NaN 84013 35 0 15923 0.261 + 10723 IQMELSDYYN 10 33 638.2816698863522 NaN 0 638.2818603515625 PEAK HCD FTMS 0 0 0 19244 21837.650390625 0.4059550974811264 1 -0.03946685791015625 9 Unmodified _IQMELSDYYN_ tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1 1.7422754331352037 0.33869314273211465 2 E 1 9 0.9691 0 0 0.076035 0 0 692.9756189701669 449.5128573053344 1142.4884762755014 0 0 0 0 0 0 0 0 0 + E 0.076035 + + 1 + NaN NaN 100832.9 NaN 15363 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19254 79.838 NaN 192450 35 0 25515 0.264 + -1 LYRGPCPC 8 52 483.2202970452118 NaN 0 483.00323486328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _LYRGPCPC(Carbamidomethyl (C))_ REV__ENSG00000176435|ENST00000342213|CLEC14A 10.183394434864962 0.38822285293237185 2 P 1 -1 6.9897 0 0 0.72475 0 0 114.06968859133129 750.2797495055478 864.3494380968791 0 0 0 0 0 0 0 0 0 P 0.72475 + + 26 + NaN NaN 118322.2 NaN 15364 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19255 79.841 NaN 70988 35 0 10388 0.261 -1 0 42 404.2329439970461 806.4513350608922 2 404.2330322265625 MULTI HCD FTMS 0 0 0 19244 8166.50634765625 0.003842541033335835 -14 0.38253021240234375 11 NaN NaN 2 Q 1 -1 0.9691 0 0 0.12017 0 0 438.269097367336 237.10561548404533 675.3747128513813 0 0 0 0 0 0 0 0 0 Q 0.12017 - 2 + NaN NaN 120850.5 NaN 15365 3888 19244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19257 79.846 NaN 650700 35 0 56864 0.327 + 31866 VYMSCFPFFI 10 87 627.2900664307234 1252.5655799282467 2 627.2907104492188 MULTI HCD FTMS 0 0 0 19256 362730.28125 0.7252606172135919 -6 0.1768951416015625 1 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 48.345845343767074 0.08380532769255708 2 VYTVVDE 7 -1 77.413 0 0 6.1804 0 0 0 444.1576326959594 444.1576326959594 34.193795368079876 0 0 0 0 1.9604093769761877 1.6989700043360187 0.7059771852360797 0 VYTVVDE 6.1804 - 874 + NaN NaN 190431.8 NaN 15366 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19258 79.85 NaN 680470 35 0 107620 0.261 + 5640 FMNDGTWKF 9 94 573.2604212565166 NaN 0 573.2803344726562 PEAK HCD FTMS 0 0 0 19256 18618.54296875 0.6277552593888577 -4 0.11455535888671875 2 Unmodified _FMNDGTWKF_ REV__ENSG00000164830|ENST00000517566|OXR1;REV__nc|ENSG00000164830|Q8N573-2|OXR1;REV__nc|ENSG00000164830|Q8N573-4|OXR1;REV__nc|ENSG00000164830|Q8N573-5|OXR1;REV__nc|ENSG00000164830|Q8N573-6|OXR1;REV__nc|ENSG00000164830|Q8N573-7|OXR1;REV__nc|ENSG00000164830|Q8N573|OXR1 20.453626601364224 0.18435338882370536 2 {I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L} 7 -1 42.936 0 0 3.7515 0 0 165.0388268692904 162.0559481256469 327.0947749949373 0 0 0 0 0 0 0 0.8283409326844267 0.9916440611282626 {I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L} 3.7515 - 1490 + NaN NaN 201017.1 NaN 15367 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19259 79.854 NaN 727710 35 0 105340 0.261 + 32339 VYVGFQVQL 9 65 526.7922891219899 1051.5700253107798 2 526.7927856445312 MULTI HCD FTMS 0 0 0 19256 274883.28125 0.06970547992187642 -6 0.1768951416015625 3 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 125.62461146993168 0.0008703235425492373 2 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 97.858 0 0 9.3059 9.3059 93.658 0 0 0 6.7216751192405155 6.7216751192405155 6.7216751192405155 9.208187539523749 0 2.8494850021680094 1.2218487496163564 0 0.7302046884880937 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}Q{I|L}N{I|L};[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]VG{M(Oxidation (M))|F}Q{I|L}GG{I|L};[YV]VG{M(Oxidation (M))|F}[AG]{I|L}N{I|L};[YV]VG{M(Oxidation (M))|F}{[VA]|[{I|L}G]}GQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]{I|L}GG{I|L} 9.3059;8.4303;8.1398;7.7363;6.8644;6.8607;6.8607;6.2663;5.5852 +;-;-;-;-;-;-;-;- + 526 NaN NaN 199904.2 NaN 15368 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19260 79.857 NaN 580120 35 0 58860 0.261 -1 EMPTCLLCVC 10 96 592.7453604949118 1183.4761680566235 2 592.7454223632812 MULTI HCD FTMS 0 0 0 19256 117882.6484375 0.6400741619996914 -1 0.03946685791015625 4 Carbamidomethyl (C),Oxidation (M) _EM(Oxidation (M))PTCLLCVC(Carbamidomethyl (C))_ ENSG00000106809|ENST00000375561|OGN 14.838274106304384 0.3723198072575719 2 [YN][YQ]E{I|L}P 7 -1 17.017 0 0 1.4378 0 0 0 273.0261918205485 273.0261918205485 -1.2566883979801204 0 -1.2566883979801204 0 0 0 1 0.6549471895720985 0.28872548999643577 [YN][YQ]E{I|L}P 1.4378 - 478 NaN NaN 180313.6 NaN 15369 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19261 79.861 NaN 386670 35 0 34853 0.261 + 32399 VYWTQLNMF 9 78 609.2867772350688 1216.5590015369376 2 609.2872924804688 MULTI HCD FTMS 0 0 0 19256 97250.328125 0.5888514077654518 -1 0.03946685791015625 5 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 129.77232118876745 0.0006187813247758304 2 [YV]WTQ{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 9 2 + 89.764 0 0 7.3785 7.3785 89.446 0 0 0 11.589161662900835 7.564987362915829 7.564987362915829 7.564987362915829 0 2.138210492164445 1.3979400086720375 1.4559771852360797 0 [YV]WTQ{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;[YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;[YV]WTQ{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[W{I|L}]Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N;[YV]WT[AG]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[W{I|L}]Q{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.3785;6.7567;6.6216;5.9998;5.9998;5.2465;4.7016;4.4142;3.9447;3.7924 -;+;-;-;-;-;-;-;-;- + 869 NaN NaN 149776.4 NaN 15370 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19262 79.864 NaN 199100 35 0 31436 0.261 + -1 LISDIGMCCPE 11 52 619.2671704920741 1236.5197880509481 2 619.26708984375 MULTI HCD FTMS 0 0 0 19256 80963.859375 0.46948902609572557 4 -0.107208251953125 6 Carbamidomethyl (C) _LISDIGMC(Carbamidomethyl (C))CPE_ REV__ENSG00000047644|ENST00000380861|WWC3 5.731851221503515 0.39378271418728467 2 {I|L}{I|L}QV 4 -1 38.188 0 0 3.0883 0 0 0 780.2025327621387 780.2025327621387 10 0 0 0 0 0.5 1.6989700043360187 0 0 {I|L}{I|L}QV 3.0883 - 27 NaN NaN 123454.9 NaN 15371 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19263 79.867 NaN 129800 35 0 18356 0.264 -1 0 55 457.2642972613403 912.5140415894806 2 457.26446533203125 MULTI HCD FTMS 0 0 0 19256 43859.45703125 0.41810385564168434 3 -0.0809783935546875 7 NaN NaN 2 W 1 -1 13.099 0 0 1.4355 0 0 708.4243942279556 0 708.4243942279556 0 4.68765315847925 0 0 0 0 0 0 0 W 1.4355 - 34 + NaN NaN 103561 NaN 15372 3889 19256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19265 79.872 NaN 6028800 35 0 572470 0.327 + 17266 LYPLTNYTF 9 117 566.2895386158357 1130.5645242984713 2 566.2904052734375 MULTI HCD FTMS 0 0 0 19264 3970010.5 0.9711616512028337 1 -0.028594970703125 1 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 206.74871869215147 9.242385646021313E-18 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 121.41 0 0 10.739 10.739 96.366 0 0 0 0.6232033105291492 0.6232033105291492 0.6232033105291492 13.455612550363796 0 3.274227503252014 1.5228787452803376 1.372363747448347 0.6861818737241735 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]{I|L}YTNYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]PSQ{I|L}YT{M(Oxidation (M))|F};[{I|L}P]T[Y{I|L}]NYT{M(Oxidation (M))|F};[{I|L}P]{I|L}YTGGYT{M(Oxidation (M))|F};[{I|L}P]YSQ{I|L}YT{M(Oxidation (M))|F};[Y{I|L}]PS[AG]{I|L}YT{M(Oxidation (M))|F} 10.739;9.5487;9.3175;8.2624;8.1273;7.819;6.9598;6.841;6.6288;6.3976 +;-;-;-;-;-;-;-;-;- + 7265 NaN NaN 605424.9 NaN 15373 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19266 79.877 NaN 5475700 35 0 942040 0.202 + 32283 VYTVVDEMFL 10 89 616.2994505061508 1230.5843480791016 2 616.2996826171875 MULTI HCD FTMS 0 0 0 19264 3734002.25 1 0 0 2 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 127.62 0 0 10.37 10.37 96.417 0 0 0 20.993624753846092 74.61249690339386 20.993624753846092 14.330984399557423 0 3.142159058960253 1.5228787452803376 2.885151878060192 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};[YV]VTVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVVTM{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]VTVDEYM{I|L};[YV]TVDVEYM{I|L};[YV]VTDVE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10.37;9.2059;8.8422;8.7727;8.6518;8.4358;7.9258;7.6776;7.6082;7.2444 +;-;-;-;-;-;-;-;-;- + 3186 NaN NaN 604274.4 NaN 15374 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19267 79.879 NaN 461430 35 0 20120 0.263 + 19298 NLVKGPRSS 9 75 479.2775341566531 956.5405153801062 2 479.2774963378906 MULTI HCD FTMS 0 0 0 19264 460509.59375 0.4600343782372809 39 -1.0947799682617188 3 Unmodified _NLVKGPRSS_ ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 6.2057823575117 0.30397260197431997 2 Q 1 9 10.089 0 0 1.0547 0 0 458.27192885566564 367.19924275731245 825.4711716129781 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.0547 - 40 NaN NaN 160412.4 NaN 15375 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19268 79.883 NaN 833960 35 0 144380 0.261 + 4548 EYLIVFPKL 9 87 561.3339523652179 1120.6533517972357 2 561.334228515625 MULTI HCD FTMS 0 0 0 19264 275269.5625 0.041875656090892846 14 -0.38971710205078125 4 Unmodified _EYLIVFPKL_ ENSG00000198060|ENST00000358935|MARCHF5 114.6490535036381 0.0021834323520089267 2 [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 9 0 + 87.392 0 0 7.7983 7.7983 96.977 0 0 0 14.680475292681265 12.98332479720628 12.98332479720628 87.39245647822067 0 2.805462187404089 1.3010299956639813 2.329689690656103 0 + + [YE]{I|L}{I|L}V{M(Oxidation (M))|F}PK{I|L} 7.7983 + + 534 NaN NaN 213918.8 NaN 15376 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19269 79.886 NaN 733440 35 0 206700 0.261 + 17314 LYPQFMFHL 9 72 598.3021471797576 1194.5897414263152 2 598.30224609375 MULTI HCD FTMS 0 0 0 19264 358427.5 0.11941462338762855 12 -0.33896636962890625 5 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 48.345845343767074 0.03388484103555672 2 [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 51.78 0 0 4.3345 4.3345 88.551 0 0 0 2.802718440054761 40.481231377493074 2.802718440054761 17.23197507588032 0 1.75 1.6989700043360187 0 0 + + [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[Y{I|L}][QP]{M(Oxidation (M))|F}M[H{I|L}]{M(Oxidation (M))|F};[QP]{I|L}Y{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};[QP]{I|L}Y{M(Oxidation (M))|F}M[H{I|L}]{M(Oxidation (M))|F} 4.3345;2.892;2.2381;0.79556 +;-;-;- + 385 NaN NaN 205066.5 NaN 15377 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19270 79.889 NaN 715530 35 0 38953 0.261 + 10293 IKYPENFFLL 10 105 642.3553049561452 1282.6960569790904 2 642.3554077148438 MULTI HCD FTMS 0 0 0 19264 230003.375 0.7704583793708609 1 -0.028594970703125 6 Unmodified _IKYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 67.83816525789305 0.020146919733137328 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}E{I|L}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 10 5 + 53.515 0 0 4.1721 4.1721 89.379 0 0 0 19.744237387763086 31.11941264025134 19.744237387763086 28.509562869230855 0 0.7302046884880937 1.3979400086720375 0 1.1421590589602533 {[WS]|[C(Carbamidomethyl (C)){I|L}]}E{I|L}[KT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[TP][Y{I|L}]YK{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[TP][Y{I|L}]Y{I|L}K{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[TP][Y{I|L}]{I|L}YK{I|L} 4.1721;1.9495;1.2141;1.0247 -;-;-;- 778 NaN NaN 196552 NaN 15378 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19271 79.893 NaN 438120 35 0 19199 0.264 -1 PLIIVCLF 8 94 487.79076122415506 973.5669695151101 2 487.790771484375 MULTI HCD FTMS 0 0 0 19264 244375.171875 0.2747093703370576 39 -1.0947799682617188 7 Carbamidomethyl (C) _PLIIVC(Carbamidomethyl (C))LF_ ENSG00000070214|ENST00000374720|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;nc|ENSG00000070214|Q8WWI5-3|SLC44A1 11.114462752807354 0.5120171699125776 2 SE[PA]{I|L} 5 -1 19.253 0 0 1.9775 0 0 458.2895180636782 0 458.2895180636782 0 3.7679593918845455 0 0 0 0 0 0.3054621874040891 0 SE[PA]{I|L} 1.9775 - 119 NaN NaN 159636.7 NaN 15379 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19272 79.896 NaN 262770 35 0 20148 0.261 + 1484 AYSYFYEAF 9 70 580.7506814476492 1159.4868099620983 2 580.7506713867188 MULTI HCD FTMS 0 0 0 19264 90613.7109375 0.8341469076874848 7 -0.1990814208984375 8 Unmodified _AYSYFYEAF_ ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11 19.256988751693697 0.19398022840297344 2 YY{M(Oxidation (M))|F} 3 6 44.157 0 0 3.8083 0 0 0 683.3008516900999 683.3008516900999 5.80812380304544 0 0 0 0 0.6989700043360187 2 0 0 YY{M(Oxidation (M))|F} 3.8083 - 321 + NaN NaN 143143 NaN 15380 3890 19264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19274 79.901 NaN 909900 35 0 128060 0.327 + -1 VVMAPWWSF 9 93 569.7754593181791 NaN 0 569.7598876953125 PEAK HCD FTMS 0 0 0 19273 14306.177734375 0.47856492258463734 1 -0.02616119384765625 1 Oxidation (M) _VVM(Oxidation (M))APWWSF_ REV__ENSG00000088305|ENST00000328111|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-2|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-3|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-4|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-5|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-6|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B;REV__nc|ENSG00000088305|Q9UBC3-8|DNMT3B 11.640296217721598 0.23883959125015683 2 AA{I|L}YD 5 -1 25.411 0 0 2.2338 0 0 131.12663120147914 470.1371248834594 601.2637560849386 0 0 0 0 0 0 0 0.566901560044258 0 AA{I|L}YD 2.2338 - 194 + NaN NaN 222902.9 NaN 15381 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19275 79.905 NaN 1249700 35 0 139340 0.261 + 21494 PYFNAPVYL 9 93 542.279458511811 1082.5443640904218 2 542.7911987304688 MULTI HCD FTMS 0 0 0 19273 51639.26171875 0.053903730484540294 13 -0.36112213134765625 2 Unmodified _PYFNAPVYL_ ENSG00000109534|ENST00000226796|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1 34.10243960390752 0.09241788333544565 2 {[TV]|[{I|L}S]}P{M(Oxidation (M))|F}[{I|L}V]YVT 9 8 42.959 0 0 3.9683 0 0 0 59.95031178952027 59.95031178952027 -0.3739273220493544 0 -0.3739273220493544 0 0 0 1.154901959985743 1.9604093769761874 0 {[TV]|[{I|L}S]}P{M(Oxidation (M))|F}[{I|L}V]YVT 3.9683 - 558 NaN NaN 287074.7 NaN 15382 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19276 79.909 NaN 344600 35 0 34411 0.261 + 28787 TTLKPDKRS 9 94 523.3036635074011 1044.592774081602 2 523.3037719726562 MULTI HCD FTMS 0 0 0 19273 140996.578125 0.7527812036382638 2 -0.05239105224609375 3 Unmodified _TTLKPDKRS_ REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|137|3|sense 6.2057823575117 0.30397260197431997 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TQQ{I|L} 6 -1 17.905 0 0 1.7141 0 0 0 311.2163452088084 311.2163452088084 3.1677903326085772 0 0 0 0 0 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TQQ{I|L} 1.7141 - 285 NaN NaN 150382.7 NaN 15383 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19277 79.912 NaN 575210 35 0 50451 0.261 + 19923 NYFPFQWKL 9 72 621.8173968209593 1241.6202407087185 2 622.3175659179688 MULTI HCD FTMS 0 0 0 19273 128715.34375 0.3894972534468677 -4 0.1104278564453125 4 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 65.23502041540118 0.010630085227462206 2 NY{M(Oxidation (M))|F} 3 6 48.416 0 0 3.8995 0 0 0 814.4254941489783 814.4254941489783 15.990990843429309 0 0 0 0 1 1.6989700043360187 0 0 + NY{M(Oxidation (M))|F} 3.8995 + + 75 + NaN NaN 171380 NaN 15384 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19278 79.915 NaN 301170 35 0 34390 0.261 + 12638 KWFESGPLLF 10 67 612.3271897904099 1222.6398266476197 2 612.3262939453125 MULTI HCD FTMS 0 0 0 19273 80910.8515625 0.776932289730651 1 -0.02616119384765625 5 Unmodified _KWFESGPLLF_ ENST00000606994.1_1_5:32174612-32175047:+|nuORF 51.41523569358685 0.07264263333115425 2 ESG[{I|L}P]{I|L}{M(Oxidation (M))|F} 7 3 54.424 0 0 4.4514 0 0 461.24189955879064 0 461.24189955879064 0 46.976781336392094 0 0 0 1.8829131673969606 0 0.7134679910804405 0 + ESG[{I|L}P]{I|L}{M(Oxidation (M))|F} 4.4514 + + 108 NaN NaN 141398.6 NaN 15385 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19279 79.919 NaN 292140 35 0 37022 0.264 + -1 VYEFACHAIC 10 58 423.8508236727389 1268.5306416184167 3 424.185302734375 MULTI HCD FTMS 0 0 0 19273 54153.3203125 0.47702923538096753 -2 0.05481719970703125 6 2 Carbamidomethyl (C) _VYEFAC(Carbamidomethyl (C))HAIC(Carbamidomethyl (C))_ REV__ENSG00000148950|ENST00000532287|IMMP1L;REV__ENST00000527184.5_1_11:31470587-31484823:-|nuORF;REV__ENST00000532624.5_1_11:31474627-31484823:-|nuORF 6.1918466704503565 0.44252927588099017 2 VY 2 -1 45.217 0 0 3.5645 0 0 0 1003.3749198296952 1003.3749198296952 30.268024924119672 0 0 0 0 0.4247425010840047 2 0 0 VY 3.5645 + + 16 + NaN NaN 135694.7 NaN 15386 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19280 79.922 NaN 310740 35 0 25146 0.261 + 11035 IYFEAREETGF 11 67 454.5505328674028 1360.6297692024084 3 454.5509948730469 MULTI HCD FTMS 0 0 0 19273 65510.296875 0.2874385775452792 -3 0.0942840576171875 7 Unmodified _IYFEAREETGF_ ENSG00000196569|ENST00000421865|LAMA2 9.764250979337305 0.37200617284565546 2 {I|L}Y 2 9 45.217 0 0 3.3232 0 0 0 1081.459259582675 1081.459259582675 29.643331241078172 0 0 0 0 0.4247425010840047 2 0 0 + {I|L}Y 3.3232 + + 40 + NaN NaN 142815.3 NaN 15387 3891 19273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19282 79.927 NaN 640270 35 0 156960 0.327 -1 IYRTFFCF 8 75 577.2808688925379 NaN 0 577.2809448242188 PEAK HCD FTMS 0 0 0 19281 248557.75 0.62395336373301 3 -0.08527374267578125 1 Carbamidomethyl (C) _IYRTFFC(Carbamidomethyl (C))F_ ENST00000462616.1_1_9:139310627-139310981:+|nuORF 28.486842064014134 0.3795038552627567 2 E 1 -1 14.732 0 0 1.2782 0 0 147.08374098785674 873.3745672762055 1020.4583082640622 0 0 0 0 0 0.4247425010840047 0 0.5 0 E 1.2782 - 14 + NaN NaN 188313.4 NaN 15388 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19283 79.931 NaN 262680 35 0 20290 0.261 + 5593 FLPYHVLLL 9 64 557.8364016119908 1113.6582502907816 2 557.8367919921875 MULTI HCD FTMS 0 0 0 19281 46351.3671875 0.6127271388455049 3 -0.08527374267578125 2 Unmodified _FLPYHVLLL_ ENSG00000119714|ENST00000650645|GPR68 20.871210003555333 0.18003371494288972 2 [Y{I|L}]P{I|L}{I|L} 5 5 31.427 0 0 2.8219 0 0 0 511.2666236640816 511.2666236640816 6.210149894766701 0 0 0 0 0 2 0 0 [Y{I|L}]P{I|L}{I|L} 2.8219 - 92 NaN NaN 133882.4 NaN 15389 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19284 79.935 NaN 63216 35 0 6145 0.261 -1 0 45 509.8037904894488 1017.5930280456976 2 509.803955078125 MULTI HCD FTMS 0 0 0 19281 36920.57421875 0.08628693926850638 41 -1.1442947387695312 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6696 0 0 852.5143822710867 0 852.5143822710867 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6696 - 4 + NaN NaN 102760.7 NaN 15390 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19285 79.938 NaN 169250 35 0 56925 0.261 + 33744 YLENREKEE 9 45 605.2905095100588 1208.5664660869174 2 606.2999267578125 MULTI HCD FTMS 0 0 0 19281 53314.50390625 0.20972131469670133 52 -1.4591140747070312 4 Unmodified _YLENREKEE_ ENST00000565421.1_1_16:53404024-53404910:-|nuORF;ENST00000565598.2_1_16:53404185-53404910:-|nuORF 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 108746.9 NaN 15391 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19286 79.942 NaN 184830 35 0 30182 0.263 -1 DYICPRCESGF 11 55 468.52898674596264 1402.565130838088 3 468.52947998046875 MULTI HCD FTMS 0 0 0 19281 30211.5078125 0.34042433131474115 -3 0.0809783935546875 5 2 Carbamidomethyl (C) _DYIC(Carbamidomethyl (C))PRC(Carbamidomethyl (C))ESGF_ ENSG00000070423|ENST00000292363|RNF126;ENST00000591394.2_1_19:651609-663133:-|nuORF;ENST00000592626.3_1_19:652824-663133:-|nuORF;RNF126-PRSS57|1|fusion 5.868138319507137 0.39318500527288264 2 {[YD]|[{M(Oxidation (M))|F}M]}[PG]{[ES]|[DT]|[{I|L}C]}C{I|L} 8 -1 22.113 0 0 1.5766 0 0 0 535.2097587159857 535.2097587159857 0.12333735073724483 0 0 0 0 0.5 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}[PG]{[ES]|[DT]|[{I|L}C]}C{I|L} 1.5766 - 28 NaN NaN 124657.6 NaN 15392 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19287 79.945 NaN 157160 35 0 19563 0.261 + 24269 RYFLPPYTF 9 54 602.3134426054148 1202.6123322776295 2 602.313720703125 MULTI HCD FTMS 0 0 0 19281 65663.375 0.7215692307639476 -4 0.12044525146484375 6 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 2 T{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1594 0 0 936.48735243965 0 936.48735243965 0 12.859987446469033 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1594 + + 111 NaN NaN 108930.8 NaN 15393 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19288 79.948 NaN 132300 35 0 11390 0.264 + 21042 PLSRKHGG 8 61 426.2460041809561 850.4774554287122 2 426.2456970214844 MULTI HCD FTMS 0 0 0 19281 36096.87890625 0.3638562441966219 5 -0.14432525634765625 7 Unmodified _PLSRKHGG_ ENSG00000142168|ENST00000270142|SOD1 2.8892196856762586 0.5377058178582064 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 3 8 25.062 0 0 2.9468 0 0 0 440.27097894849663 440.27097894849663 10.167118777434744 0 0 0 0 0 1.6989700043360187 0 0 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L} 2.9468 - 35 NaN NaN 105346.1 NaN 15394 3892 19281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19290 79.953 NaN 1109500 35 0 79850 0.327 + 13580 KYPENFFLL 9 110 585.8131605635726 1169.6117681939452 2 585.814208984375 MULTI HCD FTMS 0 0 0 19289 370036.25 0.001880996180874164 168 -4.465995788574219 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 54.11 0 0 4.6263 4.6263 84.978 0 0 0 3.748162098248997 11.312047359429968 3.748162098248997 7.844406447039056 0 2.028659694992122 0 0.2614393726401688 0.7898166913470483 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]D{[WS]|[C(Carbamidomethyl (C)){I|L}]}K{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]DP{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}PP{I|L}{I|L};[YV]D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}K{I|L}{I|L};[{M(Oxidation (M))|F}V]{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}YK{I|L};[YV]D{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}K{I|L};[{M(Oxidation (M))|F}V]{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}KY{I|L};[YK]{[{M(Oxidation (M))|F}D]|MM}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{I|L}{I|L};[{M(Oxidation (M))|F}V]{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}Y{I|L}K 4.6263;3.9556;3.839;3.8225;3.0021;2.3687;2.1666;1.6827;1.639;1.275 +;-;-;-;-;-;-;-;-;- + 3201 NaN NaN 254682.7 NaN 15395 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19291 79.958 NaN 445970 35 0 99527 0.261 + 26062 SPEYFEPIL 9 62 547.773893977617 1093.533235022034 2 547.77392578125 MULTI HCD FTMS 0 0 0 19289 306721.59375 0.2785899624073083 5 -0.1377105712890625 2 Unmodified _SPEYFEPIL_ ENSG00000104756|ENST00000221200|KCTD9;ENST00000434597.2_1_9:37477166-37477928:+|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF 46.020951573049366 0.037705236580089195 2 {M(Oxidation (M))|F}EP{I|L}{I|L} 5 4 59.993 0 0 5.4861 0 0 476.191698142775 0 476.191698142775 0 47.456903350432924 0 0 0 1.6549471895720984 0 0.6989700043360187 0 + {M(Oxidation (M))|F}EP{I|L}{I|L} 5.4861 + + 152 NaN NaN 154668.6 NaN 15396 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19292 79.961 NaN 487630 35 0 39626 0.261 + -1 ASSCNYYCFL 10 90 642.7551117075857 1283.4956704819713 2 642.7551879882812 MULTI HCD FTMS 0 0 0 19289 109418.1875 0.6711889502262548 -2 0.05239105224609375 3 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 8.155526934196011 0.43213520406898465 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}E 3 -1 13.512 0 0 1.0527 0 0 0 878.3189791580056 878.3189791580056 2.424347351631047 0 0 0 0 0 1.3010299956639813 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}E 1.0527 - 228 NaN NaN 170312.6 NaN 15397 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19293 79.965 NaN 158280 35 0 20913 0.261 -1 LYCCFQLL 8 71 558.7649610565885 1115.515369179977 2 558.7654418945312 MULTI HCD FTMS 0 0 0 19289 48307.40625 0.318588705189875 6 -0.167266845703125 4 2 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))C(Carbamidomethyl (C))FQLL_ ENST00000378434.8_1_13:48985702-48985729:-|nuORF 9.347437153973935 0.5250182646323369 2 P{I|L}{I|L} 3 -1 27.435 0 0 2.4594 0 0 774.2817860334 0 774.2817860334 0 2.134387616742611 0 0 0 0.4247425010840047 0 0 0 P{I|L}{I|L} 2.4594 - 112 NaN NaN 117374.3 NaN 15398 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19294 79.968 NaN 319290 35 0 34403 0.261 + -1 LYHCCLRFS 9 65 599.7773223451019 NaN 0 599.7654418945312 PEAK HCD FTMS 0 0 0 19289 10471.7724609375 0.6444867540603718 1 -0.02622222900390625 5 Carbamidomethyl (C) _LYHC(Carbamidomethyl (C))CLRFS_ REV__ENST00000568641.1_1_17:5403699-5403804:-|nuORF 5.230669730166228 0.26989974671959066 2 C{M(Oxidation (M))|F}QVY 5 -1 13.047 0 0 1.0895 0 0 62.08278109293821 492.189781323927 554.2725624168652 0 0 0 0 0 0 0 0 0 C{M(Oxidation (M))|F}QVY 1.0895 - 105 + NaN NaN 146170.7 NaN 15399 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19295 79.971 NaN 455260 35 0 67879 0.261 + 19888 NYEDYFPEI 9 75 595.2558292049068 1188.4971054766136 2 595.255126953125 MULTI HCD FTMS 0 0 0 19289 122124 0.40959259457232966 -2 0.05239105224609375 6 Unmodified _NYEDYFPEI_ ENSG00000185247|ENST00000355220|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;nc|ENSG00000185247|P43364-2|MAGEA11 79.59630418116434 0.005983006570063981 2 [YN]EDY{M(Oxidation (M))|F}[EP]{I|L} 9 0 + 73.98 0 0 6.2247 6.2247 91.541 0 0 0 30.514611430754144 48.918271902055324 30.514611430754144 17.825834421237516 0 1.8494850021680094 1.3010299956639813 0.7302046884880937 1.1861818737241734 + + [YN]EDY{M(Oxidation (M))|F}[EP]{I|L};[YN]EDYE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[YN]{[QV]|[N{I|L}]|[RA]|[KV]}YDE{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]EDY[{I|L}P][{M(Oxidation (M))|F}E];[YN]E[YG]RE{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YC]|[HE]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}KDE{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YC]|[HE]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}SRE{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[MN]KDE{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.2247;4.7248;3.0404;2.5994;1.3121;0.3874;0.20073;0.052569 +;-;-;-;-;-;-;- + 316 NaN NaN 165628.3 NaN 15400 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19296 79.974 NaN 146160 35 0 22528 0.262 + 1745 CLEIKVQF 8 55 490.26835251876264 978.5221521043253 2 490.2685241699219 MULTI HCD FTMS 0 0 0 19289 51536.9140625 0.42997628676761745 24 -0.6624526977539062 7 Unmodified _CLEIKVQF_ ENST00000588967.1_1_19:44332352-44339713:+|nuORF 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.5824 0 0 813.4433079654566 0 813.4433079654566 0 8.406206186877938 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5824 + + 48 + NaN NaN 110012 NaN 15401 3893 19289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19298 79.979 NaN 608560 35 0 58065 0.327 + 11370 IYNPPFGYL 9 74 542.279458511811 1082.5443640904218 2 542.7911376953125 MULTI HCD FTMS 0 0 0 19297 50179.40234375 0.05237985381248562 16 -0.44965362548828125 1 Unmodified _IYNPPFGYL_ REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1 24.67388899826682 0.14717941214954053 2 [Y{I|L}]V{[C(Carbamidomethyl (C))G]|[NC]}[VP]Y 8 -1 28.944 0 0 2.6737 0 0 0 128.0731819650887 128.0731819650887 2.212784959284857 0 0 0 0 0.9247425010840047 1.3010299956639813 0 0.6307196863200843 [Y{I|L}]V{[C(Carbamidomethyl (C))G]|[NC]}[VP]Y 2.6737 - 186 NaN NaN 177085.1 NaN 15402 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19299 79.984 NaN 364070 35 0 56194 0.261 + 10584 IPLYIDDTL 9 70 531.7894812657144 1061.5644095982286 2 531.7896728515625 MULTI HCD FTMS 0 0 0 19297 231539.375 0.9946763391261453 4 -0.11148834228515625 2 Unmodified _IPLYIDDTL_ ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2 97.07464715276575 0.004340583992084827 2 [{I|L}P]{I|L}Y{I|L}DDT{I|L} 9 0 + 65.724 0 0 6.1912 6.1912 91.674 0 0 0 4.137342758552691 37.69045457321418 4.137342758552691 19.547509540478032 0 1.7302046884880937 0 0.3807196863200844 0 + + [{I|L}P]{I|L}Y{I|L}DDT{I|L};[Y{I|L}][{I|L}P]{I|L}DDT{I|L};[{I|L}T]DD{I|L}Y{I|L}P{I|L} 6.1912;4.3498;3.7097 +;-;- + 171 NaN NaN 139433.6 NaN 15403 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19300 79.987 NaN 780820 35 0 112940 0.261 + 14126 LADEVITVF 9 76 503.77643867372433 1005.5383244142487 2 503.7765197753906 MULTI HCD FTMS 0 0 0 19297 257613.0625 0.30216786532629486 -4 0.107208251953125 3 Unmodified _LADEVITVF_ ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 52.268347100219714 0.028397529699942435 2 V{I|L}TV{M(Oxidation (M))|F} 5 4 61.058 0 0 6.0721 0 0 428.18931777168126 0 428.18931777168126 0 54.06804392152253 0 0 0 2.1237125054200234 0 0.4247425010840047 0 + V{I|L}TV{M(Oxidation (M))|F} 6.0721 + + 142 NaN NaN 206628.6 NaN 15404 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19301 79.991 NaN 182720 35 0 24069 0.261 + 25611 SGEVFAGLVL 10 39 496.2764963334022 990.5384397336044 2 496.27642822265625 MULTI HCD FTMS 0 0 0 19297 97793.0390625 0.5605540827384844 -2 0.05245208740234375 4 Unmodified _SGEVFAGLVL_ REV__ENSG00000160339|ENST00000291744|FCN2;REV__nc|ENSG00000160339|Q15485-2|FCN2 24.020572477871973 0.2864316864133941 2 {M(Oxidation (M))|F}Q{I|L}V{I|L} 5 -1 48.443 0 0 4.8906 0 0 372.16392714668126 0 372.16392714668126 0 34.463950151760656 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}Q{I|L}V{I|L} 4.8906 - 67 NaN NaN 114202.7 NaN 15405 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19302 79.994 NaN 269400 35 0 41065 0.261 + -1 CGCYLILDL 9 63 563.7692228881461 1125.5238928430922 2 563.7696533203125 MULTI HCD FTMS 0 0 0 19297 80297.8359375 0.353588126571613 6 -0.1705322265625 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GC(Carbamidomethyl (C))YLILDL_ REV__ENSG00000087263|ENST00000566157|OGFOD1;REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 12.531546534597751 0.2520865569484384 2 {I|L}D{I|L} 3 -1 30.445 0 0 2.705 0 0 766.3173158673126 0 766.3173158673126 0 17.728787452803374 0 0 0 0.4247425010840047 0 0 0 {I|L}D{I|L} 2.705 + + 47 NaN NaN 146127.8 NaN 15406 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19303 79.997 NaN 580590 35 0 102220 0.261 + 4810 EYVFSVSTF 9 86 539.7580126511384 1077.5014723690767 2 539.7581176757812 MULTI HCD FTMS 0 0 0 19297 124265.1640625 0.5650291016288145 -1 0.02622222900390625 6 Unmodified _EYVFSVSTF_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 61.357469665136826 0.01568246967499496 2 NYN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VST 8 3 30.807 0 0 2.8591 0 0 0 162.0558260553344 162.0558260553344 13.394098756171694 0 0 0 0 1.610924374808178 0 0.9247425010840047 0 NYN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VST 2.8591 - 429 + NaN NaN 174917.8 NaN 15407 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19304 80.001 NaN 431640 35 0 101900 0.261 + 29885 VFDIHVIDF 9 68 552.7899350185448 1103.5653171038896 2 553.29150390625 MULTI HCD FTMS 0 0 0 19297 61364.75 0.03892528910026411 20 -0.5477142333984375 7 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 52.268347100219714 0.028397529699942435 2 [{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F} 9 0 + 44.504 0 0 4.0327 4.0327 83.237 0 0 0 4.762036441594191 20.34704035745584 4.762036441594191 5.496812376923039 0 1.8182503180159344 0 0 0 + + [{M(Oxidation (M))|F}V]D{I|L}HV{I|L}D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}V{I|L}HV{I|L}D{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}TV[HV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 4.0327;3.5346;2.5226 +;-;- + 367 NaN NaN 152673.7 NaN 15408 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19305 80.004 NaN 198120 35 0 10602 0.264 -1 0 77 404.2329439970461 806.4513350608922 2 404.2328796386719 MULTI HCD FTMS 0 0 0 19297 90025.9609375 0.04235941714134743 -8 0.22180938720703125 8 NaN NaN 2 Q 1 -1 8.5392 0 0 1.0589 0 0 176.10584872789428 499.27536951236567 675.38121824026 0 0 0 0 0 0.6549471895720984 0 0 0 Q 1.0589 - 33 + NaN NaN 119458.8 NaN 15409 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19306 80.007 NaN 93028 35 0 10766 0.261 -1 NGCQMSVPPNR 11 45 638.2816698863522 NaN 0 638.2802124023438 PEAK HCD FTMS 0 0 0 19297 22497.6484375 0.41822425495291726 7 -0.2032928466796875 9 Carbamidomethyl (C),Oxidation (M) _NGC(Carbamidomethyl (C))QM(Oxidation (M))SVPPNR_ ENSG00000179988|ENST00000406217|PSTK;ENST00000493461.1_1_10:124742263-124743062:+|nuORF;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK 2.735195868890462 0.3343611804837492 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.43031 0 0 310.03103889204186 814.4246424258264 1124.4556813178683 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.43031 + + 4 + NaN NaN 108346.3 NaN 15410 3894 19297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19308 80.012 NaN 4499600 35 0 657670 0.327 + 32340 VYVGFQVQL 9 104 526.7922891219899 1051.5700253107798 2 526.79248046875 MULTI HCD FTMS 0 0 0 19307 3943496 1 0 0 1 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 170.55093314911917 3.526520053928E-09 2 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 103.07 0 0 9.8015 9.8015 94.029 0 0 0 14.584544672768104 61.57380493797153 14.584544672768104 9.208187539523749 0 2.8494850021680094 1.2218487496163564 0 1.0752574989159953 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]GV{M(Oxidation (M))|F}QVQ{I|L};[YV]V{M(Oxidation (M))|F}GQVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QQV{I|L};[YV]GV{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}QVAAV;[YV]G{M(Oxidation (M))|F}VQVQ{I|L};[YV]V{M(Oxidation (M))|F}GQV[AG]{I|L} 9.8015;8.9259;8.8251;8.4186;8.3072;8.1579;7.9494;7.9494;7.6096;7.5429 +;-;-;-;-;-;-;-;-;- + 3651 NaN NaN 777835.4 NaN 15411 3895 19307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19309 80.017 NaN 804950 35 0 162920 0.261 + -1 AEFEYLVQM 9 74 573.2616711958386 NaN 0 573.28076171875 PEAK HCD FTMS 0 0 0 19307 22070.48828125 0.6728610275565955 -1 0.0328216552734375 2 Oxidation (M) _AEFEYLVQM(Oxidation (M))_ REV__ENSG00000198758|ENST00000361965|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3;REV__nc|ENSG00000198758|Q8TE67-3|EPS8L3 21.74664581756881 0.17567436591797916 2 T{I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L} 8 -1 56.86 0 0 4.968 0 0 63.993218628438235 162.05591760806877 226.049136236507 0 0 0 0 0 0 0 1.1989700043360187 1.610924374808178 T{I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L} 4.968 - 510 + NaN NaN 217120 NaN 15412 3895 19307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19310 80.02 NaN 562550 35 0 50165 0.261 + 31867 VYMSCFPFFI 10 79 627.2900664307234 1252.5655799282467 2 627.2901000976562 MULTI HCD FTMS 0 0 0 19307 500137.84375 1 0 0 3 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 48.345845343767074 0.08380532769255708 2 VYTVVDE 7 -1 79.849 0 0 6.3748 0 0 0 444.15781580142817 444.15781580142817 38.88673707186568 0 0 0 0 1.9049471895720984 2 0.7134679910804405 0 VYTVVDE 6.3748 - 623 + NaN NaN 180380.6 NaN 15413 3895 19307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19311 80.024 NaN 237230 35 0 26231 0.261 -1 0 61 591.7932930892645 1181.5720332453288 2 591.7929077148438 MULTI HCD FTMS 0 0 0 19307 125388.3984375 1 0 0 4 NaN NaN 2 {I|L}NV{I|L} 4 -1 49.993 0 0 4.231 0 0 724.2823333511811 0 724.2823333511811 0 28.566147098514705 0 0 0 1.4247425010840047 0 0 0.3807196863200844 {I|L}NV{I|L} 4.231 - 211 NaN NaN 142646.2 NaN 15414 3895 19307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19312 80.027 NaN 378340 35 0 39605 0.261 + 20407 NYYFGVYLAI 10 75 611.8113223773662 1221.6080918215323 2 611.8109130859375 MULTI HCD FTMS 0 0 0 19307 159955.890625 0.7009552258468542 -3 0.08527374267578125 5 Unmodified _NYYFGVYLAI_ REV__ENSG00000103546|ENST00000568943|SLC6A2;REV__nc|ENSG00000103546|P23975-2|SLC6A2;REV__nc|ENSG00000103546|P23975-3|SLC6A2 21.74664581756881 0.3077012291670537 2 [YN]YDK{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 9 -1 + 80.198 0 0 6.5649 6.5649 94.749 0 0 0 28.256886463274277 49.740341373809684 28.256886463274277 80.19791627941643 0 1.620371515030528 2 0 0.6861818737241735 [YN]YDK{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.5649 - 87 NaN NaN 145367.7 NaN 15415 3895 19307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19313 80.03 NaN 103900 35 0 12331 0.261 -1 YNKNMHFHM 9 51 619.2671704920741 1236.5197880509481 2 619.2667236328125 MULTI HCD FTMS 0 0 0 19307 18870.279296875 0.1094239963069223 10 -0.2791900634765625 6 Oxidation (M) _YNKNMHFHM(Oxidation (M))_ ENST00000507877.5_2_3:17627861-17741495:-|nuORF 0.6014990680409731 0.3464572424761564 2 E{I|L}[DN]{M(Oxidation (M))|F} 5 -1 9.2082 0 0 0.74469 0 0 164.97616119723563 450.27118860416255 615.2473498013982 0 0 0 0 0 0 0 0 0 E{I|L}[DN]{M(Oxidation (M))|F} 0.74469 - 7 + NaN NaN 123194 NaN 15416 3895 19307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19315 80.035 NaN 4171500 35 0 694660 0.327 + 32284 VYTVVDEMFL 10 97 616.2994505061508 1230.5843480791016 2 616.2996215820312 MULTI HCD FTMS 0 0 0 19314 2881341.5 0.7716496421500549 6 -0.1760406494140625 1 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 232.51386929243182 1.9773198795669464E-33 2 [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 0 + 126.74 0 0 10.299 10.299 92.103 0 0 0 5.783409326844264 13.789850105233299 5.783409326844264 5.783409326844264 0 3.1861818737241734 1.5228787452803376 2.9291746928241125 0 + + [YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]TVVDEYM{I|L};[YV]YEDVVTM{I|L};[Y{I|L}]SVVDE{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDEYM{I|L};[YV]YEDV{I|L}SM{I|L} 10.299;9.8289;9.2831;9.1783;9.0986;8.743;8.7084;8.2628;7.717;7.5635 +;-;-;-;-;-;-;-;-;- + 6328 NaN NaN 629999.2 NaN 15417 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19316 80.04 NaN 2638100 35 0 212740 0.261 + 17267 LYPLTNYTF 9 115 566.2895386158357 1130.5645242984713 2 566.2897338867188 MULTI HCD FTMS 0 0 0 19314 1385077.375 0.33882379669995494 7 -0.20542144775390625 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 191.38036244623 2.972967745938989E-13 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 113.37 0 0 10.028 10.028 96.336 0 0 0 2.9972646727865992 2.9972646727865992 2.9972646727865992 15.039237471316298 0 2.8243923658886185 1.6989700043360187 1.350576203518622 0.6549471895720984 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]T[Y{I|L}]NYT{M(Oxidation (M))|F};[Y{I|L}]P{[QS]|[NT]}{I|L}YT{M(Oxidation (M))|F};[YT]N[{I|L}P]{I|L}YT{M(Oxidation (M))|F};[{I|L}P]TNY{I|L}YT{M(Oxidation (M))|F};[{I|L}P]Y{[QS]|[NT]}{I|L}YT{M(Oxidation (M))|F};[{I|L}P]T[Y{I|L}]GGYT{M(Oxidation (M))|F} 10.028;8.6976;8.6391;7.3038;6.6089;6.5874;5.7329;5.5512;5.2571;5.2151 +;-;-;-;-;-;-;-;-;- + 6765 NaN NaN 492495 NaN 15418 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19317 80.043 NaN 408900 35 0 117180 0.262 + 10213 IGTDIVGIL 9 42 450.7735513539331 899.5325497746662 2 450.77362060546875 MULTI HCD FTMS 0 0 0 19314 155541.859375 0.17579366290295398 -3 0.081939697265625 3 Unmodified _IGTDIVGIL_ REV__ENST00000534281.1_1_11:10536572-10536629:-|nuORF 53.57557251787612 0.02656881086235134 2 {I|L}VVA{I|L} 5 -1 54.623 0 0 6.0723 0 0 386.179491111525 0 386.179491111525 0 40.643265708843046 0 0 0 2.055462187404089 0 0 0 {I|L}VVA{I|L} 6.0723 - 31 NaN NaN 157726.4 NaN 15419 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19318 80.046 NaN 530230 35 0 42758 0.261 + 31682 VYKNYQFI 8 81 537.7835743984296 1073.552595863659 2 537.7835083007812 MULTI HCD FTMS 0 0 0 19314 70266.578125 0.14185975777483134 1 -0.03615570068359375 4 Unmodified _VYKNYQFI_ REV__ENSG00000005801|ENST00000399602|ZNF195;REV__nc|ENSG00000005801|O14628-4|ZNF195;REV__nc|ENSG00000005801|O14628-5|ZNF195;REV__nc|ENSG00000005801|O14628-6|ZNF195;REV__nc|ENSG00000005801|O14628-7|ZNF195 34.18733598223924 0.30560024141787767 2 [YV]VG{M(Oxidation (M))|F}Q[KS]{M(Oxidation (M))|F} 9 -1 + 66.309 0 0 6.1766 6.1766 88.822 0 0 0 41.88424994129406 11.038398967110723 11.038398967110723 9.208187539523749 0 1.7984550065040281 1.6989700043360187 0 0.3252574989159953 [YV]VG{M(Oxidation (M))|F}Q[KS]{M(Oxidation (M))|F};[YV]VG{M(Oxidation (M))|F}[AG][KS]{M(Oxidation (M))|F};[YV]V{M(Oxidation (M))|F}GQ[KS]{M(Oxidation (M))|F};[YV]R{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}{M(Oxidation (M))|F};[YV]VG[YK][QA]{M(Oxidation (M))|F};[YV]V{M(Oxidation (M))|F}G[AG][KS]{M(Oxidation (M))|F};[YV]V{M(Oxidation (M))|F}[RD]Y{I|L};[YV]VG{[DS]|[MA]|[CV]|TT}HGQ{I|L};[YV]R{M(Oxidation (M))|F}DYV{I|L};[YV]R{M(Oxidation (M))|F}DVY{I|L} 6.1766;5.3189;5.2926;4.7324;4.5025;4.4349;4.3851;3.3648;3.3407;3.2867 -;-;-;-;-;-;-;-;-;- 1536 + NaN NaN 171956.8 NaN 15420 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19319 80.05 NaN 615370 35 0 76230 0.261 -1 YYMDYLAAL 9 77 569.7597499412319 1137.5049469492637 2 569.7598266601562 MULTI HCD FTMS 0 0 0 19314 293806.84375 0.43498874985102204 14 -0.3939361572265625 5 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 28.486842064014134 0.11819662193267319 2 {I|L}AA{I|L} 4 -1 44.68 0 0 3.9279 0 0 751.2518314608412 0 751.2518314608412 0 28.226825097560422 0 0 0 1.4247425010840047 0 0 0 {I|L}AA{I|L} 3.9279 + + 147 NaN NaN 175693.8 NaN 15421 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19320 80.053 NaN 340500 35 0 12786 0.262 -1 0 70 479.2775341566531 956.5405153801062 2 479.2772521972656 MULTI HCD FTMS 0 0 0 19314 357488.53125 0.35711962667564406 45 -1.2622451782226562 6 NaN NaN 2 QK 2 -1 15.217 0 0 1.5908 0 0 458.27342804074783 239.09279810123283 697.3662261419806 0 0 0 0 0 0.7742275032520141 0 0 0 QK 1.5908 - 88 + NaN NaN 132603 NaN 15422 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19321 80.056 NaN 1516100 35 0 398830 0.261 + 11470 IYQGGIFEL 9 82 520.2784727267518 1038.5423925203036 2 520.27685546875 MULTI HCD FTMS 0 0 0 19314 390629.5625 0.33939256933356243 -4 0.1081695556640625 7 Unmodified _IYQGGIFEL_ ENSG00000121858|ENST00000241261|TNFSF10 85.27202061508552 0.004649858145912257 2 [{M(Oxidation (M))|F}E]KVQ{M(Oxidation (M))|F}E{I|L} 8 6 + 69.153 0 0 6.6587 6.6587 86.083 0 0 0 2.3320816214660454 16.40978057358332 2.3320816214660454 2.3320816214660454 0 1.2302046884880937 0 0.5941876774005248 1.055462187404089 [{M(Oxidation (M))|F}E]KVQ{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QVQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KV[AG]{M(Oxidation (M))|F}E{I|L};[Y{I|L}][AG]VQ{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QV[AG]{M(Oxidation (M))|F}E{I|L};[Q{I|L}]YVQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]{I|L}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}T][VG]VQ{M(Oxidation (M))|F}E{I|L} 6.6587;6.4341;6.2097;5.9851;5.7668;5.5423;5.5423;5.2212;5.1002;5.0176 -;-;-;+;-;-;-;-;-;- + 842 NaN NaN 314791.8 NaN 15423 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19322 80.06 NaN 929430 35 0 66221 0.261 + 29474 TYVEVWNDF 9 102 586.7665230954932 1171.5184932577863 2 586.7666625976562 MULTI HCD FTMS 0 0 0 19314 217317.328125 0.8223303857097906 1 -0.03615570068359375 8 Unmodified _TYVEVWNDF_ ENSG00000198858|ENST00000361574|R3HDM4 100.0907132914201 0.004261551473353346 2 [YT]VEVWND{M(Oxidation (M))|F} 9 0 + 84.037 0 0 7.1734 7.1734 90.592 0 0 0 10.61583825354596 67.24046640435233 10.61583825354596 9.208187539523749 0 2.7614393726401687 1.2218487496163564 0.9802046884880937 0 + + [YT]VEVWND{M(Oxidation (M))|F};[YT]VEVWGGD{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YT]VWND{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YT]VWGGD{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}V[YT]WND{M(Oxidation (M))|F};[YT]VE{[{M(Oxidation (M))|F}H]|[RQ]}{[ET]|[MV]}{M(Oxidation (M))|F};[YT]V[C(Carbamidomethyl (C))R]P{[ET]|[MV]}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}V[YT]WGGD{M(Oxidation (M))|F};[HQ]E[R{M(Oxidation (M))|F}]THA{M(Oxidation (M))|F};[YT]VE[WP]N[YT] 7.1734;6.3874;4.7804;3.9944;3.2202;3.1296;2.7671;2.4342;2.0801;1.7702 +;-;-;-;-;-;-;-;-;- + 2254 NaN NaN 238765 NaN 15424 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19323 80.063 NaN 515820 35 0 62642 0.261 + 23151 RFILNLPTF 9 71 560.8296409146644 1119.6447288961288 2 561.3344116210938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 32.78568957990786 0.09846250359632436 2 N{I|L}PT{M(Oxidation (M))|F} 5 4 28.077 0 0 2.5077 0 0 529.3371540751538 0 529.3371540751538 0 -2.5310825343260923 -2.5310825343260923 0 0 1.1237125054200234 0 0 0.28872548999643577 + N{I|L}PT{M(Oxidation (M))|F} 2.5077 + + 381 NaN NaN 173731.3 NaN 15425 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19324 80.066 NaN 236530 35 0 30908 0.261 -1 VFESSKMDF 9 62 553.2481949438368 1104.4818369544735 2 553.248046875 MULTI HCD FTMS 0 0 0 19314 42539.44140625 0.1933492876145349 1 -0.03615570068359375 10 Oxidation (M) _VFESSKM(Oxidation (M))DF_ ENSG00000136731|ENST00000259253|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF;nc|ENSG00000136731|Q9NYU2-2|UGGT1;UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant 13.50788311687929 0.24365122550260465 2 D{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.215 0 0 824.3762288995891 0 824.3762288995891 0 14.798187706630157 0 0 0 0 0 0.3494850021680094 0 D{M(Oxidation (M))|F} 2.215 + + 109 + NaN NaN 134656.5 NaN 15426 3896 19314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19326 80.071 NaN 1432200 35 0 106330 0.327 + 19924 NYFPFQWKL 9 109 621.8173968209593 1241.6202407087185 2 621.81884765625 MULTI HCD FTMS 0 0 0 19325 354474.0625 0.7762504455862616 2 -0.04917144775390625 1 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 65.23502041540118 0.010630085227462206 2 [YN]{M(Oxidation (M))|F}[SG]A{I|L}[DP]Y 10 7 47.783 0 0 3.8485 0 0 0 111.1273743549497 111.1273743549497 8.195990759876103 0 0 0 0 0.9247425010840047 1.6989700043360187 0.535666875892183 0.555462187404089 [YN]{M(Oxidation (M))|F}[SG]A{I|L}[DP]Y 3.8485 - 2303 NaN NaN 301638.7 NaN 15427 3897 19325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19327 80.076 NaN 397050 35 0 37448 0.264 + 17353 LYQCRREEHQ 10 66 454.5505328674028 1360.6297692024084 3 454.5506896972656 MULTI HCD FTMS 0 0 0 19325 158637.53125 0.6960515904057224 3 -0.0786590576171875 2 Unmodified _LYQCRREEHQ_ REV__ENSG00000103148|ENST00000611875|NPRL3 11.517880264261096 0.4033776509493788 2 {I|L}Y[C(Carbamidomethyl (C))C]{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 9 -1 59.051 0 0 4.34 0 0 0 128.07146631412346 128.07146631412346 43.8173657553704 0 0 0 0 1.5484550065040281 2 0.8494850021680094 0 {I|L}Y[C(Carbamidomethyl (C))C]{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W 4.34 - 318 + NaN NaN 155039.8 NaN 15428 3897 19325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19328 80.079 NaN 548700 35 0 117920 0.261 + 17315 LYPQFMFHL 9 78 598.3021471797576 1194.5897414263152 2 598.3024291992188 MULTI HCD FTMS 0 0 0 19325 135316.390625 0.045082355077826354 19 -0.5182113647460938 3 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 44.40701690623563 0.04511410083598184 2 [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}[H{I|L}] 9 0 + 35.401 0 0 2.9635 2.9635 82.138 0 0 0 18.71884532246048 4.137342758552695 4.137342758552695 4.886583344790523 0 1.4308845489566888 1.6989700043360187 0 0 + + [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]S{[RE]|[WV]}MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[Y{I|L}]S{[RE]|[WV]}M{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]W[VS]M{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]W[VS]MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[H{I|L}];[Y{I|L}]{[ET]|[MV]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}H{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YT]V{[RE]|[WV]}MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[YT]V{[RE]|[WV]}M{M(Oxidation (M))|F}[H{I|L}];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[RE]|[WV]}MH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.9635;2.5544;2.5186;2.2106;1.9741;1.5845;1.348;1.0468;1.011;0.0061962 +;-;-;-;-;-;-;-;-;- + 544 + NaN NaN 174298.8 NaN 15429 3897 19325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19329 80.083 NaN 262270 35 0 10638 0.262 -1 0 73 487.79076122415506 973.5669695151101 2 487.7907409667969 MULTI HCD FTMS 0 0 0 19325 83311.015625 0.0936523807590039 46 -1.2852783203125 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.3455 0 0 808.4884000344446 0 808.4884000344446 0 6.901056208558032 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3455 - 144 + NaN NaN 134247.9 NaN 15430 3897 19325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19330 80.086 NaN 336620 35 0 62412 0.261 -1 LYSRMICNP 9 64 577.2808688925379 NaN 0 577.2810668945312 PEAK HCD FTMS 0 0 0 19325 84974.4765625 0.21331103328149573 8 -0.2201385498046875 5 Carbamidomethyl (C) _LYSRMIC(Carbamidomethyl (C))NP_ L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|193|1|anti-sense 10.073929032068715 0.24642998803896465 2 T 1 -1 6.2814 0 0 0.54501 0 0 325.14534266613197 723.3344210260374 1048.4797636921694 0 0 0 0 0 0 0 0.3807196863200844 0 T 0.54501 - 30 + NaN NaN 140672.2 NaN 15431 3897 19325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19332 80.091 NaN 7877600 35 0 1671300 0.327 + 17623 LYYDAIWHF 9 108 614.2952551878867 1226.5759574425733 2 614.2955932617188 MULTI HCD FTMS 0 0 0 19331 5789175.5 0.3385097124608261 -4 0.11148834228515625 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 161.8943921545576 8.236690082142223E-09 2 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 97.749 0 0 7.9692 7.9692 88.195 0 0 0 1.7659970366415934 1.7659970366415934 1.7659970366415934 1.7659970366415934 0 2.4247425010840047 2 1.2689301784845295 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}HW{M(Oxidation (M))|F};{I|L}YDYA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAWH{I|L}{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}ADH{M(Oxidation (M))|F};[Y{I|L}]YDAHW{I|L}{M(Oxidation (M))|F} 7.9692;7.8253;7.0313;6.9756;6.7215;6.2758;6.2357;5.9514;5.9066;5.8776 +;+;-;-;-;-;-;-;-;- + 10796 NaN NaN 756826.4 NaN 15432 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19333 80.095 NaN 1060400 35 0 72351 0.261 + 13581 KYPENFFLL 9 118 585.8131605635726 1169.6117681939452 2 585.8143310546875 MULTI HCD FTMS 0 0 0 19331 314707.65625 0.001599745699233816 173 -4.425895690917969 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 2 [{M(Oxidation (M))|F}V]G[DV]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 10 5 + 47.901 0 0 4.0954 4.0954 81.284 0 0 0 0.47183545729396315 16.532125137753436 0.47183545729396315 0.47183545729396315 0 1.4392404878284264 1.154901959985743 0 0.9386218330464626 [{M(Oxidation (M))|F}V]G[DV]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV]T[PG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]G[DV]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]G[DV]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][QP][{M(Oxidation (M))|F}E]YK{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YV]T[PG]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 4.0954;4.0551;3.2678;3.1712;2.6909;2.6506;2.5094;2.044;1.8633;1.7667 -;+;-;-;-;-;-;-;-;- + 3459 NaN NaN 252780.8 NaN 15433 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19334 80.099 NaN 759380 35 0 77745 0.264 + 20761 PGKRGRPG 8 89 412.74618200259613 823.4778110719923 2 412.74603271484375 MULTI HCD FTMS 0 0 0 19331 393368.875 0.20335149416888426 -4 0.11148834228515625 3 Unmodified _PGKRGRPG_ ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;nc|ENSG00000060718|P12107-4|COL11A1 5.230669730166228 0.5342319408533849 2 HC(Carbamidomethyl (C)) 2 8 10.969 0 0 1.332 0 0 100.09719556342846 423.2721041315063 523.3692996949347 0 0 0 0 0 0 0 0 0 HC(Carbamidomethyl (C)) 1.332 - 79 + NaN NaN 215771.2 NaN 15434 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19335 80.102 NaN 1289800 35 0 94247 0.261 + 27668 TALNLFFKL 9 92 533.8184603104121 1065.622367687624 2 533.8184814453125 MULTI HCD FTMS 0 0 0 19331 399280.3125 0.08818094316520927 -4 0.11148834228515625 4 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 179.17365725063826 1.1335045685127237E-12 2 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 125.5 0 0 11.777 11.777 97.901 0 0 0 35.51029995663981 16.478174818886373 16.478174818886373 25.00508444608478 0 2.579689690656103 1.5228787452803376 1.6791746928241125 1.9604093769761874 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};TA{I|L}GG{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};[TA]{I|L}[KA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L}N{I|L}[TA]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{I|L}N{I|L}[TA]{I|L} 11.777;9.431;8.4451;7.7409;7.581;6.7257;5.8616;3.2019;1.7518;1.2412 +;-;+;-;-;-;-;-;-;- + 1387 NaN NaN 290707.2 NaN 15435 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19336 80.106 NaN 727840 35 0 98271 0.261 + 10527 IPFDGDLLSM 10 83 562.2705249263507 1122.5264969195014 2 562.2706298828125 MULTI HCD FTMS 0 0 0 19331 175247.875 0.8906634610016735 4 -0.120269775390625 5 Oxidation (M) _IPFDGDLLSM(Oxidation (M))_ ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant 74.92900055777586 0.011744908545316337 2 TPVR[HD]S{M(Oxidation (M))|F} 8 6 49.819 0 0 4.4381 0 0 165.07855422187657 0 165.07855422187657 0 30.165025357721543 0 0 0 1 0 2.1989700043360187 0 TPVR[HD]S{M(Oxidation (M))|F} 4.4381 - 605 NaN NaN 198678.8 NaN 15436 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19337 80.109 NaN 156270 35 0 5838.9 0.261 + 28242 TLISNRALN 9 68 501.2906072263501 1000.5666615195003 2 501.2906188964844 MULTI HCD FTMS 0 0 0 19331 67397.1328125 0.03812631069187985 -31 0.8538360595703125 6 Unmodified _TLISNRALN_ ENST00000361055.8_1_3:69124642-69126989:-|nuORF 6.2057823575117 0.30397260197431997 2 N 1 8 5.5289 0 0 0.55257 0 0 414.24569091578775 469.24595056705317 883.4916414828409 0 0 0 0 0 0.3054621874040891 0 0 0 + N 0.55257 + + 29 + NaN NaN 114918.1 NaN 15437 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19338 80.112 NaN 723600 35 0 53198 0.261 + 15214 LNPDYESIF 9 103 549.2616179590897 1096.5086829849793 2 549.2718505859375 MULTI HCD FTMS 0 0 0 19331 37956.14453125 0.20925197894932335 -5 0.1377105712890625 7 Unmodified _LNPDYESIF_ REV__ENSG00000103710|ENST00000220062|RASL12;REV__nc|ENSG00000103710|Q9NYN1-2|RASL12 22.736283301280096 0.1639198954644489 2 [Y{I|L}]A{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F} 10 -1 + 63.995 0 0 5.8362 5.8362 90.724 0 0 0 30.194634427571856 7.269987279362624 7.269987279362624 16.359921914233908 0 1.4604093769761874 2 0.3807196863200844 0 [Y{I|L}]A{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F};NM[C(Carbamidomethyl (C))K]{I|L}EGV{M(Oxidation (M))|F};[Y{I|L}]Y{[DA]|[EG]}[EP]{I|L}N;[Y{I|L}]A{[YD]|[{M(Oxidation (M))|F}M]}[EP]{I|L}N;[Y{I|L}]A[W{I|L}]EE{[CA]|SS};NMN{I|L}V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T[W{I|L}]ER{M(Oxidation (M))|F};NMN{I|L}AA{[MS]|[{M(Oxidation (M))|F}A]}V{M(Oxidation (M))|F};KAC(Carbamidomethyl (C)){I|L}V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F};NMGG{I|L}V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F} 5.8362;4.3442;3.477;3.4589;3.1338;3.1308;2.6278;2.4074;2.3841;2.291 -;-;-;-;-;-;-;-;-;- 1456 + NaN NaN 197171.8 NaN 15438 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19339 80.116 NaN 327940 35 0 32415 0.261 + -1 ASSCNYYCFL 10 76 642.7551117075857 1283.4956704819713 2 642.755126953125 MULTI HCD FTMS 0 0 0 19331 72148.828125 0.44257264094484505 3 -0.09180450439453125 8 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 4.897010918128616 0.4493830473644964 2 QY[WM]S[VP]{M(Oxidation (M))|F}{I|L} 9 -1 20.087 0 0 1.565 0 0 113.93019459631712 0 113.93019459631712 0 -2.8448146454826038 -2.8448146454826038 0 0 0.9749073637206092 0 0.6139829889124311 0 QY[WM]S[VP]{M(Oxidation (M))|F}{I|L} 1.565 - 92 + NaN NaN 138240.5 NaN 15439 3898 19331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19341 80.12 NaN 1503300 35 0 162120 0.327 + -1 LYTNHSSCIF 10 115 621.2853102237277 1240.5560675142553 2 621.2846069335938 MULTI HCD FTMS 0 0 0 19340 680345.5 0.5870335143476759 -2 0.04917144775390625 1 Carbamidomethyl (C) _LYTNHSSC(Carbamidomethyl (C))IF_ REV__ENSG00000115556|ENST00000450993|PLCD4;REV__ENST00000459791.5_1_2:219487363-219492999:+|nuORF;REV__ENST00000469493.5_1_2:219472784-219492999:+|nuORF;REV__ENST00000473443.5_1_2:219483577-219498591:+|nuORF 26.268140514670165 0.2654086933305545 2 {I|L}Y[DP]{I|L}ADY 8 -1 80.421 0 0 6.4826 0 0 0 287.10355366468326 287.10355366468326 49.686177829559966 0 0 0 0 2.805462187404089 2 0.8287886595888969 0 {I|L}Y[DP]{I|L}ADY 6.4826 - 6111 + NaN NaN 338015.4 NaN 15440 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19342 80.125 NaN 806790 35 0 64378 0.261 + -1 YLEGPVEGHVC 11 97 630.2901195281152 1258.5656861230302 2 630.2902221679688 MULTI HCD FTMS 0 0 0 19340 516129.34375 0.582802536757607 -2 0.04917144775390625 2 Carbamidomethyl (C) _YLEGPVEGHVC(Carbamidomethyl (C))_ REV__ENST00000366541.7_1_1:243419456-243433497:+|nuORF;REV__ENST00000490065.5_1_1:243419456-243433436:+|nuORF 18.1463463914782 0.2989727007011538 2 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 -1 81.558 0 0 6.4802 0 0 0 299.11451486015983 299.11451486015983 63.8548006324465 0 0 0 0 2.124803706770636 1.6989700043360187 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.4802 - 2880 + NaN NaN 235749 NaN 15441 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19343 80.128 NaN 406560 35 0 29515 0.261 + 21800 QALGGFFTYFV 11 77 625.3148103890603 NaN 0 625.3034057617188 PEAK HCD FTMS 0 0 0 19340 19234.279296875 0.7236639357917013 -2 0.04917144775390625 3 Unmodified _QALGGFFTYFV_ ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1 8.155526934196011 0.3189852622248163 2 QR{I|L}{M(Oxidation (M))|F}D 5 8 21.459 0 0 1.7186 0 0 277.12948542480177 309.1238095851895 586.2532950099912 0 0 0 0 0 0.5 0 0.3807196863200844 0 QR{I|L}{M(Oxidation (M))|F}D 1.7186 - 318 + NaN NaN 165331.5 NaN 15442 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19344 80.132 NaN 1743500 35 0 362040 0.261 + 23152 RFILNLPTF 9 88 560.8296409146644 1119.6447288961288 2 561.3331298828125 MULTI HCD FTMS 0 0 0 19340 411338.53125 0.13797198379542883 -7 0.1934967041015625 4 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 125.52916310638031 0.0008761121089336018 2 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 93.568 0 0 8.3569 8.3569 92.562 0 0 0 4.137342758552691 50.542359562158126 4.137342758552691 9.208187539523749 0 2.8979400086720375 0 0.3252574989159953 1.274227503252014 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}QKKPT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{I|L}N[R{I|L}]{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[AG]KKPT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{I|L}GG[R{I|L}]{M(Oxidation (M))|F};[KP]{M(Oxidation (M))|F}[KA][KG]PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[KA][EP]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{I|L}[PA]P[HK];[{M(Oxidation (M))|F}T]P{I|L}{I|L}N[R{I|L}]{M(Oxidation (M))|F} 8.3569;7.5345;4.1521;3.9753;3.3297;3.1528;3.0608;3.0436;2.2609;2.189 +;-;-;-;-;-;-;-;-;- + 804 NaN NaN 362946.7 NaN 15443 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19345 80.135 NaN 397010 35 0 57428 0.261 + 19889 NYEDYFPEI 9 62 595.2558292049068 1188.4971054766136 2 595.2561645507812 MULTI HCD FTMS 0 0 0 19340 193454.265625 0.6488277045333299 4 -0.12009429931640625 5 Unmodified _NYEDYFPEI_ ENSG00000185247|ENST00000355220|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;nc|ENSG00000185247|P43364-2|MAGEA11 41.95555342248728 0.056367691549927025 2 [YN]E{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[EP]{I|L} 9 0 + 44.371 0 0 3.7334 3.7334 87.79 0 0 0 11.39506772603255 19.93378736925017 11.39506772603255 16.602445143395826 0 1.6747425010840047 0 0.3252574989159953 0.4247425010840047 + + [YN]E{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[EP]{I|L};[YN]E{[YD]|[{M(Oxidation (M))|F}M]}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[YN]E{[YD]|[{M(Oxidation (M))|F}M]}{[QV]|[N{I|L}]|[RA]|[KV]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}[YV]{[YD]|[{M(Oxidation (M))|F}M]}E{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.7334;2.3364;0.74655;0.32802 +;-;-;- + 85 NaN NaN 155917.3 NaN 15444 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19346 80.138 NaN 170770 35 0 6990 0.261 + 11825 KELSVVQSR 9 73 523.3036635074011 1044.592774081602 2 523.3035278320312 MULTI HCD FTMS 0 0 0 19340 96728.25 0.5164324512632416 10 -0.27907562255859375 6 Unmodified _KELSVVQSR_ REV__ENST00000524237.1_1_8:42338010-42396746:-|nuORF 2.9952420565917617 0.3283108881486655 2 V 1 -1 6.5938 0 0 0.63123 0 0 674.3730913196865 268.1232088678344 942.496300187521 0 0 0 0 0 0.3494850021680094 0 0 0 V 0.63123 + + 43 + NaN NaN 118237.5 NaN 15445 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19347 80.142 NaN 441680 35 0 52301 0.261 + 17409 LYQYSLQF 8 87 531.2683013756598 1060.5220498181195 2 531.2671508789062 MULTI HCD FTMS 0 0 0 19340 151345.9375 0.8922642014516632 -1 0.0295562744140625 7 Unmodified _LYQYSLQF_ ENSG00000197102|ENST00000360184|DYNC1H1 42.09456458481378 0.20402248593209013 2 {I|L}YQVK[YT]{M(Oxidation (M))|F} 8 4 + 67.573 0 0 6.3717 6.3717 86.095 0 0 0 31.630937864725155 3.679767852945943 3.679767852945943 3.679767852945943 0 1.3667053245199625 2 0.8494850021680094 0.3807196863200844 {I|L}YQVK[YT]{M(Oxidation (M))|F};{I|L}YQVK{M(Oxidation (M))|F}[YT];{I|L}YQG{[VA]|[{I|L}G]}[YT]{M(Oxidation (M))|F};{I|L}YQG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[YT];{I|L}YQ[R{M(Oxidation (M))|F}]{[MG]|[TS]}{M(Oxidation (M))|F};{I|L}YQG[{M(Oxidation (M))|F}V]{[MG]|[TS]}{M(Oxidation (M))|F};{I|L}Y[AG]VK{M(Oxidation (M))|F}[YT];{I|L}YQ{[TV]|[{I|L}S]}[YQ]{M(Oxidation (M))|F};{I|L}YQG[{M(Oxidation (M))|F}V]A[YT];{I|L}Y[AG]G{[VA]|[{I|L}G]}{M(Oxidation (M))|F}[YT] 6.3717;6.0247;5.9728;5.6258;5.6001;5.3594;5.1513;5.1502;5.0124;4.3986 -;-;-;-;-;-;-;-;-;- 803 + NaN NaN 156359.6 NaN 15446 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19348 80.145 NaN 355250 35 0 94852 0.261 + 32400 VYWTQLNMF 9 76 609.2867772350688 1216.5590015369376 2 609.2875366210938 MULTI HCD FTMS 0 0 0 19340 75028.6796875 0.45429917316042506 9 -0.24961090087890625 8 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 82.5293158979368 0.005033931517079822 2 [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 72.162 0 0 5.9317 5.9317 86.81 0 0 0 7.257724967479859 13.46787486224656 7.257724967479859 7.257724967479859 0 2.274227503252014 1.3010299956639813 0.3054621874040891 0.3054621874040891 + + [YV]WTQ{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}Q{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WTQ{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}Q{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[AG]{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]WT[AG]{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][H{I|L}][YT]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][H{I|L}]{[QS]|[NT]}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9317;5.3351;5.1748;5.1748;4.5782;4.5782;4.1704;3.0337;2.0413 +;-;-;-;-;-;-;-;- + 427 NaN NaN 146616.8 NaN 15447 3899 19340 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19350 80.15 NaN 1513000 35 0 118220 0.327 -1 0 101 404.2329439970461 806.4513350608922 2 404.23284912109375 MULTI HCD FTMS 0 0 0 19349 1423983 0.6700188397995942 -2 0.05904388427734375 1 NaN NaN 2 Q 1 -1 10.599 0 0 1.3143 0 0 308.1841600713005 367.1969712592389 675.3811313305393 0 0 0 0 0 0.5994850021680094 0 0 0 Q 1.3143 - 52 + NaN NaN 314552.8 NaN 15448 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19351 80.154 NaN 2033400 35 0 278510 0.261 + 32341 VYVGFQVQL 9 102 526.7922891219899 1051.5700253107798 2 526.7925415039062 MULTI HCD FTMS 0 0 0 19349 690708 0.1751511856484703 5 -0.1414794921875 2 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 154.46347324262513 4.107785341423729E-06 2 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 98.242 0 0 9.3424 9.3424 93.685 0 0 0 13.123016119343944 61.414412723804546 13.123016119343944 9.208187539523749 0 2.774227503252014 1.154901959985743 0 1.0356668758921828 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]V{M(Oxidation (M))|F}GQVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QVAAV;[YV]V{M(Oxidation (M))|F}GQV[AG]{I|L};[YV]V{M(Oxidation (M))|F}G[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L};[YV]V{M(Oxidation (M))|F}GQVAAV;[YV]VG{M(Oxidation (M))|F}Q[Q{I|L}]V 9.3424;8.4667;8.2738;7.8439;7.5321;7.3981;6.7753;6.6103;6.4635;6.145 +;-;-;-;-;-;-;-;-;- + 1279 NaN NaN 407155.7 NaN 15449 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19352 80.158 NaN 1511800 35 0 303770 0.261 + 14127 LADEVITVF 9 81 503.77643867372433 1005.5383244142487 2 503.77655029296875 MULTI HCD FTMS 0 0 0 19349 711990.4375 0.8351309073549396 2 -0.06122589111328125 3 Unmodified _LADEVITVF_ ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 81.61307344734483 0.005330412723537057 2 V{I|L}TV{M(Oxidation (M))|F} 5 4 65.93 0 0 6.5567 0 0 428.1913319318375 0 428.1913319318375 0 38.745980483695774 0 0 0 2.2302046884880937 0 0.805462187404089 0 + V{I|L}TV{M(Oxidation (M))|F} 6.5567 + + 289 NaN NaN 331166.1 NaN 15450 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19353 80.161 NaN 676440 35 0 86883 0.261 + 4811 EYVFSVSTF 9 75 539.7580126511384 1077.5014723690767 2 539.75927734375 MULTI HCD FTMS 0 0 0 19349 145888.234375 0.6633484020160382 5 -0.1414794921875 4 Unmodified _EYVFSVSTF_ ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 46.020951573049366 0.037705236580089195 2 TS 2 8 20.445 0 0 1.8975 0 0 724.3432826502373 162.05581079654533 886.3990934467826 0 0 0 0 0 0.805462187404089 0 0.3807196863200844 0 TS 1.8975 - 520 + NaN NaN 192508.9 NaN 15451 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19354 80.165 NaN 397200 35 0 64759 0.261 + 27580 TAEAFQIVL 9 53 496.2764963334022 990.5384397336044 2 496.27667236328125 MULTI HCD FTMS 0 0 0 19349 135662.53125 0.777623709170376 4 -0.11197662353515625 5 Unmodified _TAEAFQIVL_ ENSG00000169682|ENST00000311008|SPNS1;ENST00000569969.5_2_16:28993554-28995617:+|nuORF;nc|ENSG00000169682|Q9H2V7-2|SPNS1;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1 45.69961567697781 0.039180348357221985 2 {M(Oxidation (M))|F}Q{I|L}V{I|L} 5 4 56.186 0 0 5.6722 0 0 372.16426284004064 0 372.16426284004064 0 36.26410021363377 0 0 0 1.8494850021680094 0 0 0.4247425010840047 + {M(Oxidation (M))|F}Q{I|L}V{I|L} 5.6722 + + 109 NaN NaN 160687.3 NaN 15452 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19355 80.168 NaN 319360 35 0 13656 0.261 + -1 DQCRLYIESM 10 84 637.2796315550248 1272.5447101768495 2 637.2787475585938 MULTI HCD FTMS 0 0 0 19349 136024.859375 0.6238494682124949 -1 0.02948760986328125 6 Oxidation (M) _DQCRLYIESM(Oxidation (M))_ REV__ENSG00000149781|ENST00000345728|FERMT3;REV__ENST00000540957.1_1_11:63987010-63987876:+|nuORF;REV__ENST00000541326.5_1_11:63987122-63987876:+|nuORF;REV__nc|ENSG00000149781|Q86UX7|FERMT3 18.1463463914782 0.3413772152514074 2 [Y{I|L}][DP]{I|L}ADYQ 9 -1 43.949 0 0 3.4536 0 0 0 191.05140321541936 191.05140321541936 26.641974908773918 0 0 0 0 0.8252574989159953 2 0 0 [Y{I|L}][DP]{I|L}ADYQ 3.4536 - 325 NaN NaN 136847.7 NaN 15453 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19356 80.171 NaN 219880 35 0 79851 0.264 + 15121 LMKPTFVC 8 46 469.74700047015114 NaN 0 469.746826171875 PEAK HCD FTMS 0 0 0 19349 126082.5078125 1 0 0 7 Unmodified _LMKPTFVC_ REV__ENSG00000280090|ENST00000356130|OR8B4;REV__OR8B4|p.G252Wfs*34|1|0.78|ENSG00000280090|chr11:124424118-124424119|-/A|frameshift_variant 8.593279151180031 0.38822285293237185 2 A{[DS]|[MA]|[CV]|TT}P 4 -1 10.445 0 0 1.1142 0 0 113.08466880887063 451.21421228580317 564.2988810946738 0 0 0 0 0 0 0 0.4247425010840047 0 A{[DS]|[MA]|[CV]|TT}P 1.1142 - 7 + NaN NaN 126141.7 NaN 15454 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19357 80.174 NaN 433960 35 0 88805 0.261 + 25817 SLPPSSNK 8 77 415.22397102253854 828.4333891118771 2 415.2239685058594 MULTI HCD FTMS 0 0 0 19349 133363.421875 0.4854975724151551 -2 0.05904388427734375 8 Unmodified _SLPPSSNK_ REV__ENSG00000008405|ENST00000008527|CRY1 7.910154910731844 0.5302565402355366 2 Q 1 -1 8.2659 0 0 0.99777 0 0 220.13158744290268 477.2286471002563 697.360234543159 0 0 0 0 0 0.5501648626366046 0 0 0 Q 0.99777 - 84 + NaN NaN 160125.4 NaN 15455 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19358 80.178 NaN 653230 35 0 42113 0.261 + 15215 LNPDYESIF 9 105 549.2616179590897 1096.5086829849793 2 549.2628173828125 MULTI HCD FTMS 0 0 0 19349 173104.453125 0.9543237288372115 -3 0.0786590576171875 9 Unmodified _LNPDYESIF_ REV__ENSG00000103710|ENST00000220062|RASL12;REV__nc|ENSG00000103710|Q9NYN1-2|RASL12 34.40172386719151 0.0910440009062557 2 [Y{I|L}]A{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F} 10 -1 + 56.38 0 0 5.1418 5.1418 90.224 0 0 0 17.423523297171847 7.269987279362624 7.269987279362624 21.931339141784925 0 1.274227503252014 1.6989700043360187 0.3494850021680094 0 [Y{I|L}]A{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F};{M(Oxidation (M))|F}VT{[DA]|[EG]}{I|L}EGV{M(Oxidation (M))|F};{M(Oxidation (M))|F}VT[VS]{I|L}EGV{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}[HM]N{I|L}N;[Y{I|L}]A[W{I|L}]E{[CA]|SS}E;[Y{I|L}]A{[ES]|[DT]|[{I|L}C]}WTVE;[YT]GE{I|L}WTVE;{[QV]|[N{I|L}]|[RA]|[KV]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W{[HG]|PP}{I|L}N;{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}GM{[HG]|PP}{I|L}N;[Y{I|L}]Y[Y{M(Oxidation (M))|F}]TVE 5.1418;3.1417;3.1417;2.9638;2.4092;2.1754;2.1586;2.0833;2.074;1.9034 -;-;-;-;-;-;-;-;-;- 1453 + NaN NaN 207073.8 NaN 15456 3900 19349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19360 80.183 NaN 1666500 35 0 134210 0.327 + 17268 LYPLTNYTF 9 113 566.2895386158357 1130.5645242984713 2 566.2883911132812 MULTI HCD FTMS 0 0 0 19359 328432.21875 0.08034255220973856 12 -0.30828094482421875 1 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 147.05914393524117 1.1935124485855994E-05 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 87.15 0 0 7.7086 7.7086 89.263 0 0 0 10.40764376679222 49.89573106834786 10.40764376679222 5.708705367622429 0 2.1237125054200234 1.5228787452803376 0.9604093769761876 0.4247425010840047 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGYT{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TGGTY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENTY{M(Oxidation (M))|F} 7.7086;7.2036;6.5184;6.0134;5.9921;5.4872;4.8019;4.297;3.5296;3.0247 +;-;-;-;-;-;-;-;-;- + 4007 NaN NaN 353791.3 NaN 15457 3901 19359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19361 80.187 NaN 1143100 35 0 85940 0.261 -1 LMEMEMLSLF 10 107 630.2901195281152 1258.5656861230302 2 630.2903442382812 MULTI HCD FTMS 0 0 0 19359 885599 1 0 0 2 Oxidation (M) _LMEM(Oxidation (M))EMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 29.081581746732265 0.240155558137004 2 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 -1 82.286 0 0 6.5381 0 0 0 299.11435111718674 299.11435111718674 64.32721341614666 0 0 0 0 2.197621246364342 1.6989700043360187 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.5381 - 2369 + NaN NaN 269012.7 NaN 15458 3901 19359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19362 80.191 NaN 971400 35 0 344570 0.264 + 32755 WREQRTCTF 9 69 409.52974953390276 1225.5674192019083 3 409.52978515625 MULTI HCD FTMS 0 0 0 19359 176052.4375 0.6259512163469493 1 -0.02846527099609375 3 Unmodified _WREQRTCTF_ REV__ENST00000380775.3_7:74298902-74299554:-|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}[WH]H{M(Oxidation (M))|F} 5 -1 19.208 0 0 1.5673 0 0 487.20837598234067 0 487.20837598234067 0 1.7731749024395747 0 0 0 0 0 0 0 {I|L}[WH]H{M(Oxidation (M))|F} 1.5673 - 62 + NaN NaN 243892.9 NaN 15459 3901 19359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19363 80.2 NaN 449310 35 0 213280 0.261 -1 0 60 421.25947631218975 840.5043996911795 2 421.25921630859375 MULTI HCD FTMS 0 0 0 19359 62105.046875 0.1506885372738055 -6 0.17047119140625 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8423 0 0 675.4258302105139 0 675.4258302105139 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8423 - 10 + NaN NaN 163042.2 NaN 15460 3901 19359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19364 80.203 NaN 902060 35 0 42856 0.261 + 26697 SYAPPTDSFL 10 103 549.2616179590897 1096.5086829849793 2 549.2608642578125 MULTI HCD FTMS 0 0 0 19359 157327.109375 0.8673433349372699 -2 0.06224822998046875 5 Unmodified _SYAPPTDSFL_ ENSG00000118515|ENST00000367858|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141|SGK1 36.12702656103203 0.1790159924230938 2 E{M(Oxidation (M))|F}A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F} 10 9 + 39.781 0 0 3.6279 3.6279 80.985 0 0 0 0.9095515035538924 0.9095515035538924 0.9095515035538924 0.9095515035538924 0 1.305462187404089 0 0.3494850021680094 0 E{M(Oxidation (M))|F}A{[DA]|[EG]}{I|L}E[VG]{M(Oxidation (M))|F};[Y{I|L}]Y[YE]S{M(Oxidation (M))|F}{I|L};E{M(Oxidation (M))|F}T[VG]{I|L}E[VG]{M(Oxidation (M))|F};[Y{I|L}]YD[YT]{M(Oxidation (M))|F}{I|L};[Y{I|L}]A{[ES]|[DT]|[{I|L}C]}WTD{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}[HM]N{I|L}N;[Y{I|L}]A[W{I|L}]EE{[CA]|SS};[Y{I|L}]Y[Y{M(Oxidation (M))|F}]TD{I|L};E{M(Oxidation (M))|F}AC[C(Carbamidomethyl (C))K]N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[QN]|[E{I|L}]|[KN]}[HM]GG{I|L}N 3.6279;3.545;3.4256;3.2705;3.1512;3.0856;3.0238;3.0071;2.8994;2.6971 -;-;-;-;-;-;-;-;-;- 1344 + NaN NaN 228470.1 NaN 15461 3901 19359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19365 80.206 NaN 180320 35 0 27290 0.261 + 11326 IYMDTLNIF 9 49 573.2805321808987 1144.5465114285973 2 573.281494140625 MULTI HCD FTMS 0 0 0 19359 107182.7421875 0.16399273723773863 8 -0.216827392578125 6 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 43.85829265575387 0.04763305254408404 2 {I|L}N{I|L}[C(Carbamidomethyl (C))S]N{I|L}{M(Oxidation (M))|F} 8 5 56.261 0 0 4.9156 0 0 165.07788145029207 0 165.07788145029207 0 45.291681396006 0 0 0 0.3252574989159953 0 0.3807196863200844 0.805462187404089 {I|L}N{I|L}[C(Carbamidomethyl (C))S]N{I|L}{M(Oxidation (M))|F} 4.9156 - 145 + NaN NaN 132115.5 NaN 15462 3901 19359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19367 80.211 NaN 2021900 35 0 568970 0.327 + 11471 IYQGGIFEL 9 79 520.2784727267518 1038.5423925203036 2 520.2769165039062 MULTI HCD FTMS 0 0 0 19366 964226.5 0.8377535667298817 2 -0.050750732421875 1 Unmodified _IYQGGIFEL_ ENSG00000121858|ENST00000241261|TNFSF10 88.95385435242217 0.004553379958619559 2 [{M(Oxidation (M))|F}E]KVQ{M(Oxidation (M))|F}E{I|L} 8 6 + 72.099 0 0 6.9423 6.9423 85.987 0 0 0 1.0556259377092232 16.409780573583326 1.0556259377092232 1.0556259377092232 0 1.25 0 0.8338395061109686 1.0114393726401687 [{M(Oxidation (M))|F}E]KVQ{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QVQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KAR{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QG{[VA]|[{I|L}G]}{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QAR{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KV[AG]{M(Oxidation (M))|F}E{I|L};[Y{I|L}]QV[AG]{M(Oxidation (M))|F}E{I|L};[Y{I|L}][AG]VQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]KA[VG]{M(Oxidation (M))|F}E{I|L} 6.9423;6.8407;6.6731;6.6525;6.5715;6.5508;6.0505;5.9489;5.9489;5.7606 -;-;-;-;+;-;-;-;-;- + 2050 NaN NaN 393039.5 NaN 15463 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19368 80.215 NaN 1804300 35 0 173290 0.261 + 17269 LYPLTNYTF 9 103 566.2895386158357 1130.5645242984713 2 566.7809448242188 MULTI HCD FTMS 0 0 0 19366 140271.390625 0.052905488668448394 13 -0.33884429931640625 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 134.295615338601 0.00034446139420701925 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 85.976 0 0 7.6047 7.6047 90.331 0 0 0 10.189053588203521 10.189053588203521 10.189053588203521 8.659393232904222 0 1.9802046884880937 1.2218487496163564 0.8661764699893073 0.5451140161145328 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]{I|L}PTNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}QSYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[Y{I|L}]{I|L}PTGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}QSTY{M(Oxidation (M))|F};[{I|L}P]Y{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}[AG]SYT{M(Oxidation (M))|F} 7.6047;6.8388;6.7035;6.3944;6.3081;5.7541;5.6336;5.6284;5.3304;5.0977 +;-;-;-;-;-;-;-;-;- + 2908 NaN NaN 356766.3 NaN 15464 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19369 80.219 NaN 321470 35 0 11192 0.262 + 19299 NLVKGPRSS 9 76 479.2775341566531 956.5405153801062 2 479.27752685546875 MULTI HCD FTMS 0 0 0 19366 324564.53125 0.3242296020710606 51 -1.3939056396484375 3 Unmodified _NLVKGPRSS_ ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 6.2057823575117 0.30397260197431997 2 QV 2 8 13.628 0 0 1.4247 0 0 458.2718213877218 268.12363611392817 726.39545750165 0 0 0 0 0 0.805462187404089 0 0 0 QV 1.4247 - 87 + NaN NaN 143713.2 NaN 15465 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19370 80.222 NaN 612160 35 0 188950 0.261 + 25270 SAVELVVAL 9 45 450.7735513539331 899.5325497746662 2 450.7737121582031 MULTI HCD FTMS 0 0 0 19366 748437.3125 0.8458850700788584 3 -0.08025360107421875 4 Unmodified _SAVELVVAL_ KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant 85.35673624503755 0.00464763827098139 2 {[VA]|[{I|L}G]}SE{I|L}VVA{I|L} 9 2 + 95.952 0 0 10.667 10.667 97.524 0 0 0 21.706962271689747 16.478174818886373 16.478174818886373 21.706962271689747 0 2.579689690656103 1.5228787452803376 1.274227503252014 0 {[VA]|[{I|L}G]}SE{I|L}VVA{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}VVA{I|L} 10.667;8.2537 -;- 66 NaN NaN 179983.7 NaN 15466 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19371 80.226 NaN 537550 35 0 62543 0.261 -1 YYMDYLAAL 9 63 569.7597499412319 1137.5049469492637 2 569.7608032226562 MULTI HCD FTMS 0 0 0 19366 138798.46875 0.20549477892411636 20 -0.5521240234375 5 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 21.74664581756881 0.17247014374749275 2 V{I|L}DAA{I|L} 6 -1 44.526 0 0 3.9143 0 0 537.1550315191193 0 537.1550315191193 0 20.573193899842437 0 0 0 1.4247425010840047 0 0.4247425010840047 0 V{I|L}DAA{I|L} 3.9143 - 194 + NaN NaN 172346.6 NaN 15467 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19372 80.229 NaN 669150 35 0 49804 0.261 + 1627 AYYGNINFF 9 91 554.758411455893 1107.502269978586 2 554.7587890625 MULTI HCD FTMS 0 0 0 19366 172065.046875 0.6950973386977659 -2 0.06122589111328125 6 Unmodified _AYYGNINFF_ ENSG00000100479|ENST00000216367|POLE2;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2 170.55093314911917 3.526520053928E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 87.154 0 0 7.8694 7.8694 92.505 0 0 0 18.48567391607766 58.9495585356032 18.48567391607766 9.208187539523763 0 2.754432191740108 1.5228787452803376 0 1.1861818737241734 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGN{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGGG{I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}YGGG{I|L}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};VVNN{I|L}NG[MT]{M(Oxidation (M))|F};[YV]YQQN{M(Oxidation (M))|F}{M(Oxidation (M))|F};VVNGG{I|L}NG[MT]{M(Oxidation (M))|F};VVGGN{I|L}NG[MT]{M(Oxidation (M))|F};VVNNQQ{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};VVNN{I|L}GGG[MT]{M(Oxidation (M))|F} 7.8694;7.038;6.6545;5.1394;5.1148;4.4711;4.2874;4.2874;4.031;3.9038 +;-;-;-;-;-;-;-;-;- + 1362 NaN NaN 190274.3 NaN 15468 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19373 80.232 NaN 263810 35 0 19994 0.261 + 35903 YYSSYYPLV 9 73 577.7716504012783 1153.5287478693565 2 577.772705078125 MULTI HCD FTMS 0 0 0 19366 66493.8359375 0.9196184180599892 1 -0.02938079833984375 7 Unmodified _YYSSYYPLV_ REV__ENSG00000174175|ENST00000263686|SELP;REV__SELP|p.P192Qfs*6|1|0.27|ENSG00000174175|chr1:169613600-169613600|G/-|frameshift_variant 23.1484247019978 0.1603590852062899 2 YYTE{M(Oxidation (M))|F} 5 -1 48.862 0 0 4.2358 0 0 0 447.2221634731883 447.2221634731883 25.749941078743163 0 0 0 0 0.6989700043360187 2 0.4247425010840047 0 YYTE{M(Oxidation (M))|F} 4.2358 - 148 + NaN NaN 131139.3 NaN 15469 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19374 80.236 NaN 195210 35 0 11669 0.261 + 15287 LPAFIMITL 9 79 509.80379454164563 1017.5930361500913 2 509.8036193847656 MULTI HCD FTMS 0 0 0 19366 198590.953125 0.15695950461845337 -25 0.7052383422851562 8 Unmodified _LPAFIMITL_ tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1 2.0597508629832335 0.3354026079994024 2 P 1 8 2.4743 0 0 0.24315 0 0 605.3625806830976 312.14939294986567 917.5119736329632 0 0 0 0 0 0 0 0 0 + P 0.24315 + + 24 + NaN NaN 132670.7 NaN 15470 3902 19366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19376 80.241 NaN 10923000 35 0 2376400 0.327 + 17624 LYYDAIWHF 9 84 614.2952551878867 1226.5759574425733 2 614.2960815429688 MULTI HCD FTMS 0 0 0 19375 9396522 0.5494416191652554 1 -0.02136993408203125 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 131.29775728308752 0.0005262696486345744 2 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 96.213 0 0 7.844 7.844 88.359 0 0 0 2.8049207790809874 2.8049207790809874 2.8049207790809874 2.8049207790809874 0 2.4247425010840047 2 0.9392404878284264 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}HW{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};YY{I|L}DA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]A{I|L}DYWH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}HW{M(Oxidation (M))|F} 7.844;7.6153;6.8188;5.7029;5.6228;5.315;5.3063;5.212;4.9329;4.6776 +;+;-;-;-;-;-;-;-;- + 3443 NaN NaN 409270.3 NaN 15471 3903 19375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19377 80.245 NaN 2968200 35 0 218190 0.218 + 27669 TALNLFFKL 9 97 533.8184603104121 1065.622367687624 2 533.8187866210938 MULTI HCD FTMS 0 0 0 19375 2657871.25 0.5869901076995719 1 -0.02136993408203125 2 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 179.17365725063826 1.1335045685127237E-12 2 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 127.41 0 0 11.956 11.956 92.363 0 0 0 28.211864053367876 5.791812460476251 5.791812460476251 5.791812460476251 0 2.579689690656103 1.6989700043360187 1.6936726795685342 1.9604093769761874 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;[TA]N{I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]N{I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;[TA]{I|L}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L}K;{[QV]|[N{I|L}]|[RA]|[KV]}AT{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]N{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K 11.956;11.413;10.928;10.385;9.9544;9.6098;9.4109;9.3089;8.9265;8.7797 +;-;-;-;-;-;-;-;-;- + 4242 NaN NaN 413966.6 NaN 15472 3903 19375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19378 80.248 NaN 3002600 35 0 418920 0.212 + 32285 VYTVVDEMFL 10 99 616.2994505061508 1230.5843480791016 2 616.299072265625 MULTI HCD FTMS 0 0 0 19375 1461703 0.39145745024658196 13 -0.34894561767578125 3 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 214.13773924641143 6.677275740084004E-25 2 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 10 2 + 118.99 0 0 9.6698 9.6698 91.445 0 0 0 7.539237471316298 16.53212513775344 7.539237471316298 5.127881306118454 0 2.305462187404089 1.5228787452803376 2.7346368802282015 0 [Y{I|L}]SVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]SVVDEYM{I|L};[YV]TVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]TVVDEYM{I|L};{I|L}YSVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YT]VVVDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV]YEDVVTM{I|L};[Y{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}DVVTM{I|L};[YT]VVVDEYM{I|L};{I|L}YSVVDEYM{I|L} 9.6698;9.2531;9.0571;8.1279;7.6985;7.6568;7.5223;7.2678;7.2401;7.1688 -;-;+;-;-;-;-;-;-;- + 7313 NaN NaN 427231.7 NaN 15473 3903 19375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19379 80.25 NaN 1418100 35 0 95509 0.264 + 20762 PGKRGRPG 8 107 412.74618200259613 823.4778110719923 2 412.7461853027344 MULTI HCD FTMS 0 0 0 19375 1224509.5 0.6330084871330844 1 -0.02136993408203125 4 Unmodified _PGKRGRPG_ ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;nc|ENSG00000060718|P12107-4|COL11A1 5.230669730166228 0.5342319408533849 2 A 1 8 8.0989 0 0 0.9835 0 0 61.05350435165594 688.3759801151706 749.4294844668266 0 0 0 0 0 0.5 0 0 0 A 0.9835 - 84 + NaN NaN 310957.6 NaN 15474 3903 19375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19380 80.254 NaN 680550 35 0 65004 0.261 + 13582 KYPENFFLL 9 94 585.8131605635726 1169.6117681939452 2 585.814697265625 MULTI HCD FTMS 0 0 0 19375 341619.25 0.00173654474274641 178 -4.413825988769531 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 61.921 0 0 5.2942 5.2942 87.375 0 0 0 8.389399919613965 35.78218405901026 8.389399919613965 9.208187539523749 0 2.1721675119240516 0 0.3494850021680094 0.6861818737241735 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.2942;4.5069;2.45 +;-;- + 1236 NaN NaN 189589.4 NaN 15475 3903 19375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19381 80.257 NaN 157270 35 0 19478 0.262 + 20931 PLAFLVIMA 9 73 487.79076122415506 973.5669695151101 2 487.7908020019531 MULTI HCD FTMS 0 0 0 19375 92445.9453125 0.10392122584368388 52 -1.4270095825195312 6 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F}S 2 8 8.3765 0 0 0.8604 0 0 281.1835599465539 455.2594393365844 736.4429992831383 0 0 0 0 0 0 0 0.5 0 {M(Oxidation (M))|F}S 0.8604 - 15 + NaN NaN 117148.2 NaN 15476 3903 19375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19383 80.262 NaN 1253600 35 0 147360 0.327 -1 IYIDDMVLDE 10 105 621.2853102237277 1240.5560675142553 2 621.28466796875 MULTI HCD FTMS 0 0 0 19382 702388.875 0.6060535562151296 3 -0.08188629150390625 1 Oxidation (M) _IYIDDM(Oxidation (M))VLDE_ DNAH17-TMC6|1|fusion;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17 26.88365393820708 0.25965138844209146 2 {I|L}Y[DP]{I|L}ADY 8 -1 80.373 0 0 6.4788 0 0 0 287.1035504960441 287.1035504960441 50.66331119912037 0 0 0 0 2.805462187404089 1.6989700043360187 0.7984550065040281 0 {I|L}Y[DP]{I|L}ADY 6.4788 - 4668 + NaN NaN 289596.6 NaN 15477 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19384 80.266 NaN 715700 35 0 53645 0.261 -1 LMEMEMLSLF 10 99 630.2901195281152 1258.5656861230302 2 630.2904663085938 MULTI HCD FTMS 0 0 0 19382 464771.03125 0.5248097968154887 3 -0.08188629150390625 2 Oxidation (M) _LM(Oxidation (M))EMEMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 24.020572477871973 0.2864316864133941 2 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 -1 81.929 0 0 6.5097 0 0 0 299.11484705142817 299.11484705142817 62.88827606857659 0 0 0 0 1.860924374808178 2 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.5097 - 2087 + NaN NaN 202657 NaN 15478 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19385 80.27 NaN 578530 35 0 30065 0.263 + 26379 SSRQKLSPV 9 88 501.2906072263501 1000.5666615195003 2 501.29095458984375 MULTI HCD FTMS 0 0 0 19382 513953.15625 0.2907414143384079 -25 0.7036514282226562 3 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 6.2057823575117 0.30397260197431997 2 V 1 -1 6.2591 0 0 0.62555 0 0 718.3993469216472 180.07134424381096 898.4706911654581 0 0 0 0 0 0.5 0 0 0 V 0.62555 + + 46 + NaN NaN 170336.9 NaN 15479 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19386 80.273 NaN 1243900 35 0 145550 0.261 + 31672 VYKDLLVLF 9 101 555.3341230533754 1108.6536931735507 2 555.3342895507812 MULTI HCD FTMS 0 0 0 19382 308975.96875 0.30885647989933895 -4 0.11197662353515625 4 Unmodified _VYKDLLVLF_ ENSG00000037637|ENST00000375592|FBXO42 63.960520009940105 0.0120409805053046 2 VYK{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 85.58 0 0 7.7192 7.7192 94.03 0 0 0 16.41945307246931 16.41945307246931 16.41945307246931 16.41945307246931 0 2.613982988912431 1.3979400086720375 0.28872548999643577 0 + + VYK{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}V]EVKYV{I|L}{M(Oxidation (M))|F};[{I|L}V]EKVYV{I|L}{M(Oxidation (M))|F};[{I|L}V]EKYVV{I|L}{M(Oxidation (M))|F};[{I|L}V]{I|L}DKYV{I|L}{M(Oxidation (M))|F};[YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}V{M(Oxidation (M))|F};[YV]K{[QN]|[E{I|L}]|[KN]}VV{I|L}{M(Oxidation (M))|F};V{[HG]|PP}P{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}]VV[SG]{I|L}V{I|L}{M(Oxidation (M))|F} 7.7192;6.2382;5.403;5.3156;5.2171;5.1727;5.1313;4.9944;4.8765;4.6569 +;+;-;-;-;-;-;-;-;- + 1248 + NaN NaN 276405 NaN 15480 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19387 80.277 NaN 590140 35 0 144150 0.261 + 17316 LYPQFMFHL 9 81 598.3021471797576 1194.5897414263152 2 598.3026123046875 MULTI HCD FTMS 0 0 0 19382 99774.203125 0.03324102891093074 26 -0.7279052734375 5 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 42.09456458481378 0.05572955244001856 2 [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 9 0 + 36.628 0 0 3.0662 3.0662 88.326 0 0 0 0.5335993125713472 5.686362358410129 0.5335993125713472 28.010299956639816 0 1.3494850021680094 1.6989700043360187 0 0 + + [Y{I|L}][QP]{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}P]S{M(Oxidation (M))|F}M{M(Oxidation (M))|F}H{I|L} 3.0662;0.72143 +;- + 717 NaN NaN 170009 NaN 15481 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19388 80.28 NaN 138090 35 0 17576 0.263 + 14468 LEVPDMNI 8 37 465.73369747324745 929.4528420132949 2 465.73370361328125 MULTI HCD FTMS 0 0 0 19382 66277.34375 0.7291957658768873 2 -0.055694580078125 6 Unmodified _LEVPDMNI_ AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK 15.847184025352803 0.47719562709667024 2 {I|L}N{I|L} 3 5 31.198 0 0 3.3566 0 0 571.2307357251347 0 571.2307357251347 0 20.74031267727719 0 0 0 0.5 0 0 0 {I|L}N{I|L} 3.3566 - 35 NaN NaN 102960.5 NaN 15482 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19389 80.283 NaN 487210 35 0 48535 0.261 + 29140 TYIKFINLF 9 75 579.831606378513 1157.648659823826 2 579.8318481445312 MULTI HCD FTMS 0 0 0 19382 126965.8359375 0.16267053372053786 -4 0.11197662353515625 7 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 74.19965305603844 0.007729275404663812 2 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 98.515 0 0 8.5099 8.5099 90.353 0 0 0 4.679001828205486 4.679001828205486 4.679001828205486 5.414478256039672 0 2.274227503252014 2 0 1.0189301784845295 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[YT]K[YK][VP]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}KTY{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}K{I|L}[YT]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}[Y{I|L}]TK{M(Oxidation (M))|F} 8.5099;8.0422;7.4651;7.2468;5.8906;5.05;4.4024;3.431;2.9401;2.268 +;-;-;-;-;-;-;-;-;- + 417 + NaN NaN 174370 NaN 15483 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19390 80.287 NaN 246160 35 0 27424 0.261 + -1 ASSCNYYCFL 10 71 642.7551117075857 1283.4956704819713 2 642.7562866210938 MULTI HCD FTMS 0 0 0 19382 42863.26171875 0.2629302156579867 9 -0.22906494140625 8 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 2.9952420565917617 0.4594494122822477 2 {M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 15.374 0 0 1.1978 0 0 858.2988148684932 0 858.2988148684932 0 4.154193123236675 0 0 0 0.7302046884880937 0 0 0 {M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.1978 - 84 + NaN NaN 150594.7 NaN 15484 3904 19382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19392 80.291 NaN 7706200 35 0 2096400 0.327 + 23153 RFILNLPTF 9 104 560.8296409146644 1119.6447288961288 2 560.829833984375 MULTI HCD FTMS 0 0 0 19391 4226199.5 0.9473286805237767 3 -0.078643798828125 1 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 176.83740622441886 1.0594397382223596E-10 2 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 102.13 0 0 9.1219 9.1219 90.952 0 0 0 4.137342758552691 45.44531259372398 4.137342758552691 4.947948812343526 0 3.079689690656103 0 0.3494850021680094 1.6237125054200234 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}R{I|L}GG{I|L}PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}N{I|L}{I|L}R{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}GG{I|L}{I|L}R{M(Oxidation (M))|F};[TP]{I|L}{M(Oxidation (M))|F}N{I|L}{I|L}R{M(Oxidation (M))|F};[TP]{I|L}N{M(Oxidation (M))|F}{I|L}{I|L}R{M(Oxidation (M))|F};[TP]{I|L}{M(Oxidation (M))|F}GG{I|L}{I|L}R{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]P{I|L}N{I|L}{I|L}R{M(Oxidation (M))|F} 9.1219;8.68;8.2995;7.8576;5.536;4.7135;4.7077;4.5506;3.8853;3.7497 +;-;-;-;-;-;-;-;-;- + 1578 NaN NaN 820674.6 NaN 15485 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19393 80.296 NaN 1748800 35 0 141230 0.264 -1 0 119 404.2329439970461 806.4513350608922 2 404.2330322265625 MULTI HCD FTMS 0 0 0 19391 1652718.375 0.7776444298372738 3 -0.078643798828125 2 NaN NaN 2 Q 1 -1 10.841 0 0 1.3443 0 0 308.1838399278724 367.19708480319485 675.3809247310672 0 0 0 0 0 0.6237125054200234 0 0 0 Q 1.3443 - 63 + NaN NaN 350244.2 NaN 15486 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19394 80.299 NaN 1211400 35 0 89175 0.261 -1 FVHCPARFV 9 93 566.7917305095757 NaN 0 566.78173828125 PEAK HCD FTMS 0 0 0 19391 51494.9453125 1 0 0 3 Carbamidomethyl (C) _FVHC(Carbamidomethyl (C))PARFV_ ENST00000319540.8_1_4:83551356-83551434:-|nuORF 18.13498045792455 0.19991664011725976 2 TYNTQ 5 -1 22.592 0 0 1.9966 0 0 166.0697664329669 355.19831262760005 521.268079060567 0 0 0 0 0 0 0 0.8391368308784531 0.3054621874040891 TYNTQ 1.9966 - 494 + NaN NaN 290841.3 NaN 15487 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19395 80.303 NaN 147870 35 0 9059.6 0.261 + -1 LYNCVCKRCD 10 62 637.2796315550248 1272.5447101768495 2 637.7816772460938 MULTI HCD FTMS 0 0 0 19391 60146.71484375 0.3133407155085182 4 -0.1081085205078125 4 Carbamidomethyl (C) _LYNC(Carbamidomethyl (C))VCKRCD_ REV__ENSG00000091136|ENST00000222399|LAMB1;REV__ENST00000476039.1_1_7:107582891-107594053:-|nuORF 8.745405648335112 0.42901288225909884 2 {I|L}Y[YK]C(Carbamidomethyl (C))GWH{M(Oxidation (M))|F} 9 -1 + 44.658 0 0 3.5093 3.5093 85.132 0 0 0 25.985773024671524 9.965173111391898 9.965173111391898 9.208187539523749 0 0.6989700043360187 2 0 0 {I|L}Y[YK]C(Carbamidomethyl (C))GWH{M(Oxidation (M))|F};{I|L}Y[YK][CG]GWH{M(Oxidation (M))|F};HH[RH]C(Carbamidomethyl (C))GWH{M(Oxidation (M))|F};HH[RH][CG]GWH{M(Oxidation (M))|F} 3.5093;2.7857;0.93733;0.21372 -;-;-;- 136 + NaN NaN 127481 NaN 15488 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19396 80.306 NaN 235430 35 0 32391 0.262 + 17410 LYQYSLQF 8 49 531.2683013756598 1060.5220498181195 2 531.2678833007812 MULTI HCD FTMS 0 0 0 19391 75444.6484375 0.4447860319467604 5 -0.13764190673828125 5 Unmodified _LYQYSLQF_ ENSG00000197102|ENST00000360184|DYNC1H1 28.486842064014134 0.3788298654084067 2 {I|L}YQ[Y{I|L}]{[QS]|[NT]}{M(Oxidation (M))|F} 8 2 + 54.346 0 0 5.1245 5.1245 91.816 0 0 0 38.86168767277148 8.812281309285623 8.812281309285623 54.34623773781176 0 0.4247425010840047 2 0.5 0.3494850021680094 {I|L}YQ[Y{I|L}]{[QS]|[NT]}{M(Oxidation (M))|F} 5.1245 - 36 + NaN NaN 137364.4 NaN 15489 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19397 80.309 NaN 161300 35 0 5908.8 0.261 + 12188 KKNALPDIF 9 70 523.3037745104898 NaN 0 523.3038330078125 PEAK HCD FTMS 0 0 0 19391 66197.1953125 0.1021099856556 -19 0.5338211059570312 6 Unmodified _KKNALPDIF_ REV__ENSG00000105656|ENST00000262809|ELL 4.3292370932331545 0.2742679634796037 2 P 1 -1 3.9794 0 0 0.38095 0 0 544.3095621051608 400.20224939517817 944.511811500339 0 0 0 0 0 0 0 0 0 P 0.38095 + + 21 + NaN NaN 111751.7 NaN 15490 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19398 80.313 NaN 230440 35 0 17212 0.261 + 18417 MPSYFCLWFV 10 58 646.7954606489335 1291.576368364667 2 646.7952270507812 MULTI HCD FTMS 0 0 0 19391 100222.9140625 0.8983304828094644 -1 0.02950286865234375 7 Unmodified _MPSYFCLWFV_ REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|92 15.847184025352803 0.36288280428275715 2 {I|L}ER{M(Oxidation (M))|F} 4 -1 54.993 0 0 4.2578 0 0 728.2668408622362 0 728.2668408622362 0 35.784634594678266 0 0 0 1.5 0 0.805462187404089 0 {I|L}ER{M(Oxidation (M))|F} 4.2578 - 100 NaN NaN 128690.9 NaN 15491 3905 19391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19400 80.318 NaN 495890 35 0 68812 0.327 + 32342 VYVGFQVQL 9 71 526.7922891219899 1051.5700253107798 2 526.792724609375 MULTI HCD FTMS 0 0 0 19399 154693.53125 0.03922751062762584 11 -0.29802703857421875 1 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 100.37149154755038 0.004254194004462789 2 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 87.087 0 0 8.2816 8.2816 92.46 0 0 0 1.2628749457997657 1.2628749457997657 1.2628749457997657 9.208187539523749 0 3.110924374808178 1.3010299956639813 0 1.0114393726401687 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}[AG]V[AG]{I|L} 8.2816;7.406;7.2859;6.4144 +;-;-;- + 420 + NaN NaN 163652 NaN 15492 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19401 80.322 NaN 1215000 35 0 124370 0.261 + 17270 LYPLTNYTF 9 100 566.2895386158357 1130.5645242984713 2 566.2977905273438 MULTI HCD FTMS 0 0 0 19399 88007.0390625 0.02152867388471889 17 -0.4651947021484375 2 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 107.1870275148908 0.00340162908551068 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 78.343 0 0 6.9295 6.9295 87.121 0 0 0 16.980523937757752 45.90797194541551 16.980523937757752 3.7763625255165323 0 1.6237125054200234 1.2218487496163564 0.7302046884880937 0.5752574989159953 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TNTY{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGTY{M(Oxidation (M))|F};[Y{I|L}]PS[Q{I|L}]YT{M(Oxidation (M))|F};[Y{I|L}]PS[Q{I|L}]TY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}P]YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENYT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}P]TY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENTY{M(Oxidation (M))|F} 6.9295;6.5955;5.6062;5.4933;4.6291;4.295;3.401;3.2905;3.067;2.9565 +;-;-;-;-;-;-;-;-;- + 3258 NaN NaN 287536.7 NaN 15493 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19402 80.326 NaN 471920 35 0 69340 0.261 + 16446 LSPTELISF 9 64 503.77643867372433 1005.5383244142487 2 503.7767333984375 MULTI HCD FTMS 0 0 0 19399 133115.65625 0.15613833126404977 8 -0.20951080322265625 3 Unmodified _LSPTELISF_ REV__ENST00000526104.5_2_11:214381-214642:+|nuORF 32.30548876998284 0.10066689432505688 2 {I|L}TV{M(Oxidation (M))|F} 4 -1 49.68 0 0 4.9407 0 0 527.2584182055393 0 527.2584182055393 0 45.07638152291939 0 0 0 1.5 0 0.4247425010840047 0 {I|L}TV{M(Oxidation (M))|F} 4.9407 - 55 NaN NaN 174526.1 NaN 15494 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19403 80.329 NaN 368680 35 0 84385 0.262 + 24907 RYRDFSLRM 9 61 415.2168726949931 NaN 0 415.2240905761719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RYRDFSLRM_ ENSG00000038382|ENST00000344204|TRIO;ENST00000510757.1_1_5:14387480-14387957:+|nuORF;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;nc|ENSG00000038382|O75962-5|TRIO 6.723162845929126 0.26266733336404485 2 Q 1 9 6.7217 0 0 0.81139 0 0 308.17152507573 389.1785982721313 697.3501233478613 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.81139 - 22 + NaN NaN 167304.8 NaN 15495 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19404 80.332 NaN 395360 35 0 115470 0.261 + 18736 MYTLGITNF 9 60 530.2630127549043 1058.5114725766084 2 530.262939453125 MULTI HCD FTMS 0 0 0 19399 166116.09375 0.7763625813482764 -1 0.02619171142578125 5 Unmodified _MYTLGITNF_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000397300.2_1_11:93921617-93921950:-|nuORF;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 21.536976647645854 0.1742816388551942 2 QTN{M(Oxidation (M))|F} 4 6 32.524 0 0 3.0726 0 0 550.2753163068375 0 550.2753163068375 0 17.830918867322296 0 0 0 0.9247425010840047 0 0 0 QTN{M(Oxidation (M))|F} 3.0726 - 133 NaN NaN 165095.9 NaN 15496 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19405 80.336 NaN 421030 35 0 73782 0.261 + 7274 FTELSFTSF 9 64 539.7580126511384 1077.5014723690767 2 540.2762451171875 MULTI HCD FTMS 0 0 0 19399 19065.423828125 0.13186633192884806 11 -0.29802703857421875 6 Unmodified _FTELSFTSF_ ENSG00000112164|ENST00000373256|GLP1R 16.942295170755138 0.21397866736869717 2 VECEQEV{I|L} 8 8 43.651 0 0 4.0512 0 0 130.06005638349035 0 130.06005638349035 0 22.68237211568909 0 0 0 0.3494850021680094 0 0.6549471895720984 0.3252574989159953 VECEQEV{I|L} 4.0512 - 632 + NaN NaN 169310.1 NaN 15497 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19406 80.339 NaN 325000 35 0 70707 0.261 -1 LCWCSLYF 8 75 574.7494383224789 1147.4843237117577 2 574.7498168945312 MULTI HCD FTMS 0 0 0 19399 126561.78125 0.30337792639635164 -6 0.16767120361328125 7 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SLYF_ ENST00000417811.2_3_7:32763128-32763203:-|nuORF 34.18733598223924 0.30560024141787767 2 {I|L}YSTAD{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F} 10 -1 + 85.68 0 0 7.4668 7.4668 96.41 0 0 0 54.71130963036558 5.044774213264631 5.044774213264631 85.68040976044614 0 1.3494850021680094 2 0.7059771852360797 0 {I|L}YSTAD{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F} 7.4668 - 175 + NaN NaN 152015.4 NaN 15498 3906 19399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19408 80.344 NaN 1246100 35 0 124740 0.327 + 17271 LYPLTNYTF 9 96 566.2895386158357 1130.5645242984713 2 566.2997436523438 MULTI HCD FTMS 0 0 0 19407 101693.375 0.024876686341607654 18 -0.5013580322265625 1 Unmodified _LYPLTNYTF_ ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF 118.89474601620944 0.0014903111061077812 2 [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F} 9 0 + 80.645 0 0 7.1332 7.1332 93.11 0 0 0 17.772336398234003 46.29924602543241 17.772336398234003 17.57515625508539 0 1.6237125054200234 1.3010299956639813 0.6989700043360187 0.8366968715561641 + + [Y{I|L}]P{I|L}TNYT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}TGGYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]ENYT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}P]YT{M(Oxidation (M))|F};[Y{I|L}]P{I|L}T{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}Q;{[DS]|[MA]|[CV]|TT}{[QD]|[EN]|[WG]|[KD]|[RS]}KKYT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][{I|L}V]EGGYT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[RK][YQ]V{M(Oxidation (M))|F};[RH]Y[QA][NP]V{M(Oxidation (M))|F};[YK]PSWWHK 7.1332;5.5786;3.5285;3.3928;3.0987;2.3573;1.974;1.9465;1.9422;1.8547 +;-;-;-;-;-;-;-;-;- + 2047 NaN NaN 287140.3 NaN 15499 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19409 80.348 NaN 346090 35 0 27576 0.261 + 16926 LYGRDCDLGTF 11 73 630.2901195281152 1258.5656861230302 2 630.2909545898438 MULTI HCD FTMS 0 0 0 19407 224969.390625 0.25403076406477426 6 -0.14717864990234375 2 Unmodified _LYGRDCDLGTF_ ENST00000337714.7_1_17:55198527-55198593:+|nuORF 15.248480904072842 0.3242218977034194 2 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 7 8 77.617 0 0 6.1671 0 0 0 299.11448084049067 299.11448084049067 54.42909663402381 0 0 0 0 1.8556270500406935 1.6989700043360187 0 0 {I|L}YY{M(Oxidation (M))|F}A{I|L}W 6.1671 - 328 + NaN NaN 145168.9 NaN 15500 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19410 80.352 NaN 318210 35 0 156380 0.264 -1 0 56 421.25947631218975 840.5043996911795 2 421.2598876953125 MULTI HCD FTMS 0 0 0 19407 412141.8125 1 0 0 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7375 0 0 675.4259522808264 0 675.4259522808264 0 14.225490200071285 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7375 - 2 + NaN NaN 135390.9 NaN 15501 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19411 80.355 NaN 355360 35 0 18135 0.261 + 17969 MKFQALQEF 9 83 571.288711280463 NaN 0 571.2750854492188 PEAK HCD FTMS 0 0 0 19407 14852.4521484375 1 0 0 4 Unmodified _MKFQALQEF_ REV__ENSG00000143921|ENST00000272286|ABCG8;REV__nc|ENSG00000143921|Q9H221-2|ABCG8 14.838274106304384 0.2220448417561729 2 S{I|L}RTEQE 7 -1 35.13 0 0 3.0801 0 0 132.06134286366517 162.0558260553344 294.1171689189996 0 0 0 0 0 0.5 0 0.9559771852360797 0.5629529932484498 S{I|L}RTEQE 3.0801 - 617 + NaN NaN 137466.9 NaN 15502 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19412 80.358 NaN 183570 35 0 60819 0.264 + 23856 RSFHSYFPW 9 39 409.52974953390276 1225.5674192019083 3 409.5298156738281 MULTI HCD FTMS 0 0 0 19407 73091.671875 0.25987610035213715 7 -0.183319091796875 5 Unmodified _RSFHSYFPW_ ENST00000398844.6_1_5:134033736-134039485:+|nuORF 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F}N 2 8 14.464 0 0 1.1802 0 0 835.3998871297846 126.03489099674063 961.4347781265252 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}N 1.1802 - 13 + NaN NaN 119155 NaN 15503 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19413 80.362 NaN 400050 35 0 62758 0.261 + -1 YYNEHCFF 8 61 590.2322969681486 1178.450041003097 2 590.2151489257812 MULTI HCD FTMS 0 0 0 19407 17719.158203125 0.5429988696163579 -4 0.1032562255859375 6 Carbamidomethyl (C) _YYNEHC(Carbamidomethyl (C))FF_ REV__ENSG00000143278|ENST00000367412|F13B 6.354104778181461 0.5325651638111438 2 Y{M(Oxidation (M))|F} 2 -1 15.573 0 0 1.3215 0 0 850.3070183974315 0 850.3070183974315 0 6.365006360318686 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.3215 - 24 + NaN NaN 149056.3 NaN 15504 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19414 80.365 NaN 149800 35 0 42048 0.261 + 33857 YLLFTSPQEN 10 44 606.3010077136915 NaN 0 606.3013916015625 PEAK HCD FTMS 0 0 0 19407 89106.21875 1 0 0 7 Unmodified _YLLFTSPQEN_ ENSG00000002726|ENST00000360937|AOC1;ENST00000480582.1_1_7:150555040-150557681:+|nuORF;nc|ENSG00000002726|P19801-2|AOC1 5.731851221503515 0.33527861879838866 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108665.1 NaN 15505 3907 19407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19416 80.37 NaN 207070 35 0 51826 0.326 + 10214 IGTDIVGIL 9 48 450.7735513539331 899.5325497746662 2 450.77386474609375 MULTI HCD FTMS 0 0 0 19415 152747.84375 0.1726358618910562 9 -0.245574951171875 1 Unmodified _IGTDIVGIL_ REV__ENST00000534281.1_1_11:10536572-10536629:-|nuORF 36.04419817259434 0.08350412372117409 2 {[VA]|[{I|L}G]}{[ES]|[DT]|[{I|L}C]}{I|L}VVA{I|L} 9 -1 + 59.618 0 0 6.6277 6.6277 94.473 0 0 0 10.123337350737245 45.01402807042034 10.123337350737245 59.61812184018221 0 1.6307196863200843 1.0969100130080565 0 0 {[VA]|[{I|L}G]}{[ES]|[DT]|[{I|L}C]}{I|L}VVA{I|L} 6.6277 - 42 NaN NaN 119192.9 NaN 15506 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19417 80.374 NaN 953300 35 0 122180 0.261 + 21239 PRHTLATVF 9 85 521.2970023515611 NaN 0 521.28515625 PEAK HCD FTMS 0 0 0 19415 19513.125 0.5171634649877613 1 -0.0294647216796875 2 Unmodified _PRHTLATVF_ REV__ENSG00000105366|ENST00000321424|SIGLEC8;REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8 23.1484247019978 0.16626532474190622 2 TVA[PA]AVT 8 -1 44.256 0 0 4.253 0 0 165.1046995798569 162.05596338443596 327.1606629642929 0 0 0 0 0 0 0 1.7625305739907813 0 TVA[PA]AVT 4.253 - 814 + NaN NaN 235345.4 NaN 15507 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19418 80.378 NaN 313300 35 0 11427 0.261 + 21360 PTKLNTRQ 8 81 479.2775341566531 956.5405153801062 2 479.27777099609375 MULTI HCD FTMS 0 0 0 19415 273345.3125 0.27306323817496525 57 -1.5902252197265625 3 Unmodified _PTKLNTRQ_ REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF 7.289230182591677 0.5311777711368266 2 QV 2 -1 8.4075 0 0 0.87895 0 0 458.27237070412804 268.12372766666255 726.3960983707906 0 0 0 0 0 0.7059771852360797 0 0 0 QV 0.87895 - 71 + NaN NaN 148792.4 NaN 15508 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19419 80.381 NaN 165560 35 0 11823 0.261 + 28862 TVRATAEV 8 67 423.7371663806347 845.4597798280694 2 423.7375793457031 MULTI HCD FTMS 0 0 0 19415 39192.0546875 0.2314363143381386 1 -0.0294647216796875 4 Unmodified _TVRATAEV_ REV__ENSG00000161270|ENST00000378910|NPHS1;REV__nc|ENSG00000161270|O60500-2|NPHS1 2.302733041254933 0.5385759549224092 2 M 1 -1 5.4846 0 0 0.64871 0 0 441.29620929471713 270.1095369928344 711.4057462875516 0 0 0 0 0 0 0 0 0 M 0.64871 - 12 + NaN NaN 140853.7 NaN 15509 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19420 80.385 NaN 236910 35 0 77390 0.261 + 31124 VTPSEVLPF 9 42 494.7712034890506 987.5278540449012 2 494.7718811035156 MULTI HCD FTMS 0 0 0 19415 121274.0703125 0.8740960785539283 1 -0.0294647216796875 5 Unmodified _VTPSEVLPF_ ENST00000606901.1_1_5:140705901-140706042:+|nuORF 28.486842064014134 0.11819662193267319 2 V[{I|L}P]{M(Oxidation (M))|F} 4 5 19.816 0 0 2.0066 0 0 513.2455492126732 0 513.2455492126732 0 19.815578562017713 0 0 0 1.2614393726401687 0 0 0 + V[{I|L}P]{M(Oxidation (M))|F} 2.0066 + + 10 + NaN NaN 129077.5 NaN 15510 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19421 80.388 NaN 316310 35 0 24252 0.261 -1 YYMDYLAAL 9 63 569.7597499412319 1137.5049469492637 2 570.2621459960938 MULTI HCD FTMS 0 0 0 19415 96352.1875 0.2057582026302578 23 -0.6426239013671875 6 Oxidation (M) _YYM(Oxidation (M))DYLAAL_ ENSG00000126067|ENST00000373237|PSMB2 21.74664581756881 0.17247014374749275 2 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}AA{I|L} 7 -1 53.47 0 0 4.7006 0 0 342.120897361525 0 342.120897361525 0 30.79385479770071 0 0 0 1.1989700043360187 0 0 0 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}AA{I|L} 4.7006 - 154 NaN NaN 133548.5 NaN 15511 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19422 80.391 NaN 131010 35 0 8911.1 0.261 + 1721 CIHVPRIW 8 57 512.2815524109606 1022.5485518887211 2 512.2824096679688 MULTI HCD FTMS 0 0 0 19415 129019.375 0.48332006002664185 -19 0.5240859985351562 7 Unmodified _CIHVPRIW_ ENSG00000164880|ENST00000404767|INTS1 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.68356 0 0 326.1932795271961 546.2599581354124 872.4532376626084 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.68356 - 21 + NaN NaN 107920 NaN 15512 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19423 80.395 NaN 253040 35 0 25272 0.261 + 19689 NWSSFVDNTF 10 66 608.7673099040644 1215.5200668749287 2 608.7683715820312 MULTI HCD FTMS 0 0 0 19415 91937.125 0.8227758829198007 1 -0.0294647216796875 8 Unmodified _NWSSFVDNTF_ ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1 68.75988807550267 0.019054759910196034 2 D[QP]DNT{M(Oxidation (M))|F} 7 6 38.32 0 0 3.1526 0 0 380.1693592755875 0 380.1693592755875 0 8.988576192322807 0 0 0 0 0 0.7302046884880937 0.3807196863200844 D[QP]DNT{M(Oxidation (M))|F} 3.1526 - 363 NaN NaN 133340.2 NaN 15513 3908 19415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19425 80.4 NaN 4036000 35 0 868110 0.327 + 17625 LYYDAIWHF 9 100 614.2952551878867 1226.5759574425733 2 614.2962646484375 MULTI HCD FTMS 0 0 0 19424 2782590 0.1627060262374789 7 -0.18996429443359375 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 146.00731375242447 1.3047045798573153E-05 2 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 99.237 0 0 8.0906 8.0906 89.747 0 0 0 5.388728364440141 5.388728364440141 5.388728364440141 5.388728364440141 0 2.4247425010840047 2 1.2416440611282624 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}HW{M(Oxidation (M))|F};{I|L}YDYA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAWH{I|L}{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}ADH{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]ADYW{I|L}H{M(Oxidation (M))|F} 8.0906;7.6512;7.1095;7.0403;6.4215;6.4065;6.252;6.034;5.863;5.2709 +;+;-;-;-;-;-;-;-;- + 7690 NaN NaN 616799.9 NaN 15514 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19426 80.404 NaN 1606000 35 0 115650 0.261 + 27670 TALNLFFKL 9 87 533.8184603104121 1065.622367687624 2 533.8193359375 MULTI HCD FTMS 0 0 0 19424 1748886 0.3862409744242779 7 -0.18996429443359375 2 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 193.2943466776899 1.661812519250559E-13 2 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 127.62 0 0 11.976 11.976 97.984 0 0 0 33.80719686320084 16.478174818886373 16.478174818886373 25.515384402724592 0 2.579689690656103 1.6989700043360187 1.9648415687162952 2.0114393726401687 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}K{I|L};[KA]{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[TA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[NV]|[RG]}{I|L}[HM]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{I|L}N{I|L}[TA]{I|L} 11.976;9.5818;8.8037;8.3316;7.9676;7.4918;7.4894;7.4675;2.8063;2.1342 +;-;-;+;-;-;-;-;-;- + 1251 NaN NaN 334776.4 NaN 15515 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19427 80.408 NaN 656350 35 0 75663 0.263 + 20763 PGKRGRPG 8 75 412.74618200259613 823.4778110719923 2 412.74664306640625 MULTI HCD FTMS 0 0 0 19424 527027.9375 0.2724463610888644 7 -0.18996429443359375 3 Unmodified _PGKRGRPG_ ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;nc|ENSG00000060718|P12107-4|COL11A1 5.230669730166228 0.5342319408533849 2 A 1 8 7.7866 0 0 0.94557 0 0 105.08080908885229 644.3495147365575 749.4303238254098 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.94557 - 19 + NaN NaN 185306.5 NaN 15516 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19428 80.411 NaN 539550 35 0 31653 0.261 + 23900 RSSRLSLLS 9 90 509.80379454164563 1017.5930361500913 2 509.8045349121094 MULTI HCD FTMS 0 0 0 19424 463604.03125 0.3664167875679406 -18 0.4987335205078125 4 Unmodified _RSSRLSLLS_ ENST00000592422.5_1_17:43325341-43344591:+|nuORF 3.944395688203298 0.32111559684428237 2 D 1 9 9.9743 0 0 0.98018 0 0 61.05359857845912 838.4666842096311 899.5202827880903 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.98018 - 127 + NaN NaN 169608.4 NaN 15517 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19429 80.414 NaN 678470 35 0 79777 0.261 + 13583 KYPENFFLL 9 91 585.8131605635726 1169.6117681939452 2 585.8143310546875 MULTI HCD FTMS 0 0 0 19424 402034.15625 0.0020436503517890932 184 -4.460731506347656 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 72.968 0 0 6.2386 6.2386 88.94 0 0 0 8.217196696094433 40.95795416671878 8.217196696094433 9.208187539523749 0 2.4291746928241125 0 0 0.9802046884880937 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.2386;5.4513;4.9321;4.2886;4.1448;3.5014 +;-;-;-;-;- + 871 NaN NaN 205258.3 NaN 15518 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19430 80.417 NaN 394690 35 0 50388 0.261 + 16782 LYDSETKNANS 11 70 621.2853102237277 1240.5560675142553 2 621.28564453125 MULTI HCD FTMS 0 0 0 19424 165341.5 0.14266428132840778 8 -0.2161102294921875 6 Unmodified _LYDSETKNANS_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 21.590151480376914 0.2689667140516965 2 {I|L}Y[DP]{I|L}ADY 8 7 75.385 0 0 6.0767 0 0 0 287.10330261156867 287.10330261156867 55.436909460092 0 0 0 0 2.805462187404089 2 0.3252574989159953 0 {I|L}Y[DP]{I|L}ADY 6.0767 - 967 + NaN NaN 169026 NaN 15519 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19431 80.421 NaN 192050 35 0 7350.2 0.263 + 20932 PLAFLVIMA 9 63 487.79076122415506 973.5669695151101 2 487.7913513183594 MULTI HCD FTMS 0 0 0 19424 135864.8125 0.152729660736274 58 -1.6131744384765625 7 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 2.302733041254933 0.33356062215410776 2 Q 1 9 6.9897 0 0 0.71795 0 0 300.192283395085 542.2979220025999 842.4902053976848 0 0 0 0 0 0 0 0 0 Q 0.71795 - 37 + NaN NaN 121674.8 NaN 15520 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19432 80.424 NaN 473250 35 0 38004 0.261 -1 MPQPDFSFL 9 90 549.2524366198064 1096.4903203064127 2 549.2534790039062 MULTI HCD FTMS 0 0 0 19424 71989.078125 0.611814471780125 -4 0.1081085205078125 8 Oxidation (M) _M(Oxidation (M))PQPDFSFL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 38.175570920033316 0.07371992880350783 2 {M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 4 -1 43.817 0 0 3.9961 0 0 584.2255116193375 0 584.2255116193375 0 15.114393726401687 0 0 0 1.1421590589602533 0 0.7614393726401688 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 3.9961 + + 479 NaN NaN 171164.4 NaN 15521 3909 19424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19434 80.429 NaN 2337400 35 0 563990 0.327 + 23154 RFILNLPTF 9 99 560.8296409146644 1119.6447288961288 2 560.8302001953125 MULTI HCD FTMS 0 0 0 19433 1076937.375 0.2414021539838547 8 -0.21614837646484375 1 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 137.42381684818497 0.00015474832393368816 2 [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F} 9 0 + 94.645 0 0 8.4531 8.4531 92.702 0 0 0 3.65279269351241 43.860170110875686 3.65279269351241 9.208187539523749 0 2.9291746928241125 0 0.3252574989159953 1.4476212463643423 + + [R{M(Oxidation (M))|F}]{I|L}{I|L}N{I|L}PT{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}GG{I|L}PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[R{I|L}]{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[KA][EP]{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}[QT][VP]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}[PA]{I|L}P[HK];[{M(Oxidation (M))|F}T]P{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[R{I|L}]{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]{I|L}{I|L}{[CA]|SS}{I|L}{[RE]|[WV]};[R{M(Oxidation (M))|F}]{I|L}{[CA]|SS}{I|L}{I|L}{[RE]|[WV]};[W{I|L}][YK]{I|L}{I|L}{[RE]|[WV]} 8.4531;7.6307;3.6375;2.8311;2.5623;2.2738;1.7397;1.0351;0.63179;0.44116 +;-;-;-;-;-;-;-;-;- + 1705 NaN NaN 455697.6 NaN 15522 3910 19433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19435 80.433 NaN 1091500 35 0 58355 0.261 + 14842 LKEQKERA 8 96 501.2906072263501 1000.5666615195003 2 501.2910461425781 MULTI HCD FTMS 0 0 0 19433 1127246.25 0.6376790667537934 -19 0.5282669067382812 2 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 2 QV 2 7 6.9948 0 0 0.69908 0 0 546.3254348970274 224.09742151431877 770.4228564113462 0 0 0 0 0 0.3807196863200844 0 0 0 QV 0.69908 - 52 + NaN NaN 263499.6 NaN 15523 3910 19433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19436 80.437 NaN 1035300 35 0 173380 0.261 + 31673 VYKDLLVLF 9 93 555.3341230533754 1108.6536931735507 2 555.33447265625 MULTI HCD FTMS 0 0 0 19433 658161.5 0.6579069722401146 2 -0.04901123046875 3 Unmodified _VYKDLLVLF_ ENSG00000037637|ENST00000375592|FBXO42 96.36657018975838 0.004359138328518304 2 VYKD{I|L}{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 95.43 0 0 8.6077 8.6077 88.653 0 0 0 0.7981221743950329 0.7981221743950329 0.7981221743950329 0.7981221743950329 0 2.9802046884880937 1.6989700043360187 0 0.3054621874040891 + + VYKD{I|L}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]KD{I|L}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{I|L}D{I|L}V{I|L}{M(Oxidation (M))|F};[YV]KD{I|L}{I|L}{I|L}V{M(Oxidation (M))|F};[YV]K{I|L}D{I|L}{I|L}V{M(Oxidation (M))|F};[YV]KD{I|L}V{I|L}{I|L}{M(Oxidation (M))|F};[YV]K{I|L}VEV{I|L}{M(Oxidation (M))|F};[YV]K{I|L}EVV{I|L}{M(Oxidation (M))|F};[YV]KD{I|L}{I|L}V{M(Oxidation (M))|F}{I|L};[YV]K{I|L}DV{I|L}{I|L}{M(Oxidation (M))|F} 8.6077;8.5357;8.3516;7.3788;7.1947;7.1573;7.1383;7.0399;6.9768;6.9732 +;+;-;-;-;-;-;-;-;- + 2256 + NaN NaN 247287.2 NaN 15524 3910 19433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19437 80.44 NaN 1096100 35 0 113350 0.261 + 29141 TYIKFINLF 9 94 579.831606378513 1157.648659823826 2 579.8321533203125 MULTI HCD FTMS 0 0 0 19433 642606.4375 0.8233170079850124 2 -0.04901123046875 4 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 114.20165948288297 0.0022564706844261533 2 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 107.58 0 0 9.2933 9.2933 89.082 0 0 0 7.696602816742413 7.696602816742413 7.696602816742413 0.09729516507590574 0 2.2302046884880937 2 1.0138793319624577 0.6549471895720984 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}K[YT]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}K{I|L}[YT]{M(Oxidation (M))|F} 9.2933;9.2849;8.4979;8.4895;5.8847;5.8697;5.0893;5.05;4.7735;4.0287 +;-;-;-;-;-;-;-;-;- + 717 NaN NaN 278784 NaN 15525 3910 19433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19438 80.444 NaN 155770 35 0 21211 0.261 + 10925 IYAGVGEFSF 10 46 545.2665307934375 1088.5185086536749 2 545.266357421875 MULTI HCD FTMS 0 0 0 19433 45480.43359375 0.5712245379764771 2 -0.04901123046875 5 Unmodified _IYAGVGEFSF_ ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B 47.748688679222035 0.08597705450879027 2 ARW{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6 6 65.578 0 0 6.0245 0 0 276.14619643379064 0 276.14619643379064 0 58.10402823752675 0 0 0 2.3807196863200843 0 0 0 ARW{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.0245 - 90 NaN NaN 133084.5 NaN 15526 3910 19433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19440 80.449 NaN 3667600 35 0 698720 0.327 + 11085 IYGYTFYSI 9 85 563.7753001015581 1125.536047269916 2 563.7588500976562 MULTI HCD FTMS 0 0 0 19439 102742.3984375 0.4467396463348401 -1 0.0195159912109375 1 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 104.79918948944588 0.003791450360204016 2 [Y{I|L}]GYT{M(Oxidation (M))|F}YS{I|L} 9 0 + 67.563 0 0 6.0027 6.0027 89.571 0 0 0 14.07207075914718 15.246134210770919 14.07207075914718 10.31234684152075 0 1.5 1.3010299956639813 1.2931576817365436 0 + + [Y{I|L}]GYT{M(Oxidation (M))|F}YS{I|L};[Y{I|L}]GYT{M(Oxidation (M))|F}SY{I|L};[Y{I|L}]S[PG]{M(Oxidation (M))|F}DQS{I|L};[Y{I|L}]G[PS]{M(Oxidation (M))|F}DQS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[PG]{M(Oxidation (M))|F}DQS{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[VP]A{M(Oxidation (M))|F}DQS{I|L};[Y{I|L}]S[PG]{M(Oxidation (M))|F}D[AG]S{I|L};[Y{I|L}]GY[PA]DQS{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[HV][{M(Oxidation (M))|F}V]S{I|L};[Y{I|L}]ST[WE]QS{I|L} 6.0027;5.0865;4.8629;4.536;4.1348;4.1348;4.0487;4.0413;3.9693;3.8371 +;-;-;-;-;-;-;-;-;- + 3135 NaN NaN 609028.1 NaN 15527 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19441 80.453 NaN 484660 35 0 41828 0.264 + 21154 PPPGARGR 8 80 404.2329439970461 806.4513350608922 2 404.2331848144531 MULTI HCD FTMS 0 0 0 19439 373125.78125 0.17556480874592056 9 -0.25569915771484375 2 Unmodified _PPPGARGR_ KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant 5.230669730166228 0.5342319408533849 2 Q 1 8 10.234 0 0 1.269 0 0 220.13138431987187 455.2495516412719 675.3809359611438 0 0 0 0 0 0.5629529932484498 0 0 0 Q 1.269 - 64 + NaN NaN 164600.5 NaN 15528 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19442 80.457 NaN 247200 35 0 9176.9 0.261 + 11819 KELQKGPFV 9 86 523.3037745104898 NaN 0 523.3038940429688 PEAK HCD FTMS 0 0 0 19439 140195.6875 0.21625356742113833 -13 0.3576812744140625 3 Unmodified _KELQKGPFV_ REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF 13.042465956692817 0.23204487237355156 2 P 1 -1 4.6041 0 0 0.44075 0 0 566.3227762164889 378.19001184635005 944.512788062839 0 0 0 0 0 0 0 0 0 P 0.44075 + + 46 + NaN NaN 137979.7 NaN 15529 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19443 80.46 NaN 234740 35 0 15186 0.261 -1 LMEMEMLSLF 10 74 630.2901195281152 1258.5656861230302 2 630.290771484375 MULTI HCD FTMS 0 0 0 19439 110852.0234375 0.12517180285603305 10 -0.28524017333984375 4 Oxidation (M) _LMEM(Oxidation (M))EMLSLF_ DPH5|p.P261L|1|0.2|ENSG00000117543|chr1:100990484-100990484|G/A|missense_variant 17.11289562659939 0.35104376501799556 2 [Y{I|L}][DP]{I|L}ADY{M(Oxidation (M))|F} 9 -1 38.704 0 0 3.0753 0 0 0 158.05308781664272 158.05308781664272 6.766055380847732 0 0 0 0 1.064909327626439 1.5228787452803376 0 0 [Y{I|L}][DP]{I|L}ADY{M(Oxidation (M))|F} 3.0753 - 189 NaN NaN 143101.3 NaN 15530 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19444 80.463 NaN 614670 35 0 61882 0.261 + 7635 FYINSGTLQF 10 89 595.298106010358 1188.5816590875158 2 595.297607421875 MULTI HCD FTMS 0 0 0 19439 168954.90625 0.2600144796696935 -4 0.10477447509765625 5 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 147.24064527209634 2.7126949688607576E-07 2 [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 106.83 0 0 8.9884 8.9884 92.666 0 0 0 7.269987279362624 95.64326570884305 7.269987279362624 9.164539485499262 0 2.9916440611282624 0 1.0994850021680094 1.079689690656103 + + [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}[AG]{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[ET]|[MV]}{[QN]|[E{I|L}]|[KN]}{I|L}Q{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SGT{I|L}[AG]{M(Oxidation (M))|F};[RH]{I|L}[MN][RD]T{M(Oxidation (M))|F} 8.9884;8.2173;7.6292;6.7369;6.5409;5.9658;4.6023;3.7872;3.5576;3.5087 +;-;-;-;-;-;-;-;-;- + 2783 NaN NaN 189681 NaN 15531 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19445 80.467 NaN 243730 35 0 33197 0.262 + 31135 VTSWYDKL 8 61 506.2609645763475 1010.507376219495 2 506.26129150390625 MULTI HCD FTMS 0 0 0 19439 63149.2421875 0.5502123460413771 -4 0.10477447509765625 6 Unmodified _VTSWYDKL_ REV__ENSG00000110245|ENST00000227667|APOC3 15.847184025352803 0.47719562709667024 2 {M(Oxidation (M))|F}[YR]S{I|L} 5 -1 18.613 0 0 1.842 0 0 326.15942807671996 0 326.15942807671996 0 18.61310292633256 0 0 0 1.110924374808178 0 0.7302046884880937 0 {M(Oxidation (M))|F}[YR]S{I|L} 1.842 - 27 + NaN NaN 134142 NaN 15532 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19446 80.47 NaN 400570 35 0 48022 0.261 + 32343 VYVGFQVQL 9 60 526.7922891219899 1051.5700253107798 2 526.7928466796875 MULTI HCD FTMS 0 0 0 19439 48305.87890625 0.012249506251876508 16 -0.45263671875 7 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 78.14939416004806 0.006451203201226903 2 [YV]VG{M(Oxidation (M))|F}QVQ{I|L} 9 0 + 82.814 0 0 7.8753 7.8753 91.834 0 0 0 10.31234684152075 10.31234684152075 10.31234684152075 9.208187539523749 0 2.6989700043360187 1.2218487496163564 0 0.7742275032520141 + + [YV]VG{M(Oxidation (M))|F}QVQ{I|L};[YV]VG{M(Oxidation (M))|F}[AG]VQ{I|L};[YV]VG{M(Oxidation (M))|F}QQV{I|L};[YV]VG{M(Oxidation (M))|F}QV[AG]{I|L};[YV]VG{M(Oxidation (M))|F}Q[AG]V{I|L};[YV]VG{M(Oxidation (M))|F}[AG]QV{I|L};[YV]VG{M(Oxidation (M))|F}[AG][AG]V{I|L} 7.8753;6.9996;6.2638;6.019;5.3881;5.3881;4.1127 +;-;-;-;-;-;- + 331 + NaN NaN 163928 NaN 15533 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19447 80.473 NaN 175320 35 0 22147 0.261 + 24270 RYFLPPYTF 9 53 602.3133766428713 1202.6122003525425 2 602.3141479492188 MULTI HCD FTMS 0 0 0 19439 44936.50390625 0.5924224176705645 5 -0.1409149169921875 8 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 2 T{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1594 0 0 936.4810778198522 0 936.4810778198522 0 18.957465275951613 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1594 + + 50 NaN NaN 121293.8 NaN 15534 3911 19439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19449 80.478 NaN 643350 35 0 126750 0.327 + 14277 LCWCSLYF 8 102 574.7494383224789 1147.4843237117577 2 574.7498779296875 MULTI HCD FTMS 0 0 0 19448 417175.3125 1 0 0 1 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SLYF_ ENST00000417811.2_3_7:32763128-32763203:-|nuORF 40.44857923139169 0.22516712537107883 2 {I|L}YSTAD{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F} 10 8 + 89.15 0 0 7.7691 7.7691 96.528 0 0 0 45.86819398339564 5.089096130665709 5.089096130665709 60.23603014049436 0 1.274227503252014 2 0.7302046884880937 0 {I|L}YSTAD{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F};[Y{I|L}]S[YE]N{I|L}[C(Carbamidomethyl (C))S];[Y{I|L}]S[VG]Y{[CP]|[EA]}[C(Carbamidomethyl (C))S];YY[NG]DATTM{I|L};[Y{I|L}]S[YE]NSC(Carbamidomethyl (C)){I|L};[Y{I|L}]S[VG]T{[{M(Oxidation (M))|F}D]|MM}[C(Carbamidomethyl (C))S];[Y{I|L}]S[VG]Y[C(Carbamidomethyl (C))S]{[CP]|[EA]};[Y{I|L}]Y{[ES]|[DT]|[{I|L}C]}N{I|L}[C(Carbamidomethyl (C))S];[Y{I|L}]V[SG]Y{[CP]|[EA]}[C(Carbamidomethyl (C))S];[Y{I|L}]Y{[ES]|[DT]|[{I|L}C]}NSC(Carbamidomethyl (C)){I|L} 7.7691;2.5197;2.3172;2.2693;2.267;2.1438;2.0548;1.8427;1.7352;1.59 -;-;-;-;-;-;-;-;-;- 2328 + NaN NaN 190240.2 NaN 15535 3912 19448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19450 80.483 NaN 363280 35 0 69595 0.261 + 18532 MTFDPQDIL 9 57 540.259313702723 NaN 0 540.2758178710938 PEAK HCD FTMS 0 0 0 19448 5555.41552734375 0.6206810601868258 -1 0.0294952392578125 2 Unmodified _MTFDPQDIL_ ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-3|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A 14.838274106304384 0.2220448417561729 2 VECEQE 6 8 38.136 0 0 3.536 0 0 131.06216623422443 227.13945947818596 358.2016257124104 0 0 0 0 0 0 0 0.3494850021680094 0.3494850021680094 VECEQE 3.536 - 169 + NaN NaN 160683.7 NaN 15536 3912 19448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19451 80.486 NaN 307830 35 0 78974 0.261 + 17317 LYPQFMFHL 9 67 598.3021471797576 1194.5897414263152 2 598.30322265625 MULTI HCD FTMS 0 0 0 19448 122774.4375 0.04090384587033763 34 -0.96380615234375 3 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 50.855029805455786 0.030374663808198754 2 {I|L}Y[QP]{M(Oxidation (M))|F} 5 4 45.203 0 0 3.784 0 0 0 543.2384127252561 543.2384127252561 30.254537344402905 0 0 0 0 0.4247425010840047 2 0 0.3252574989159953 + {I|L}Y[QP]{M(Oxidation (M))|F} 3.784 + + 150 + NaN NaN 135586 NaN 15537 3912 19448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19453 80.491 NaN 732770 35 0 90612 0.327 -1 0 87 566.2980512400009 1130.5815495468016 2 566.2988891601562 MULTI HCD FTMS 0 0 0 19452 230568.6875 0.6454022621013394 7 -0.21329498291015625 1 NaN NaN 2 P{I|L}TNTY{M(Oxidation (M))|F} 7 -1 58.326 0 0 5.159 0 0 276.146776267775 0 276.146776267775 0 26.838519381310206 0 0 0 1.274227503252014 0 0.6747425010840047 0.5796896906561032 P{I|L}TNTY{M(Oxidation (M))|F} 5.159 - 1342 NaN NaN 203898.4 NaN 15538 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19454 80.495 NaN 342920 35 0 60983 0.261 + -1 YYNEHCFF 8 64 590.2322969681486 1178.450041003097 2 590.214599609375 MULTI HCD FTMS 0 0 0 19452 9036.0517578125 0.2769073922158308 1 -0.03614044189453125 2 Carbamidomethyl (C) _YYNEHC(Carbamidomethyl (C))FF_ REV__ENSG00000143278|ENST00000367412|F13B 2.8892196856762586 0.5377058178582064 2 YY[Y{I|L}]D 5 -1 15.062 0 0 1.2781 0 0 0 458.14642707170964 458.14642707170964 9.577118610328341 0 0 0 0 0 1.6989700043360187 0 0 YY[Y{I|L}]D 1.2781 - 13 NaN NaN 151063.5 NaN 15539 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19455 80.499 NaN 346150 35 0 33476 0.261 -1 TYNMVLNLL 9 76 548.7887061351031 1095.562859337006 2 548.78955078125 MULTI HCD FTMS 0 0 0 19452 95771.75 0.6310560622808072 -2 0.0424041748046875 3 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 47.748688679222035 0.03472022231463587 2 {I|L}N{I|L}{I|L} 4 -1 48.122 0 0 4.3925 0 0 624.2556139753981 0 624.2556139753981 0 24.821595981874708 0 0 0 1.305462187404089 0 0 0.6139829889124311 {I|L}N{I|L}{I|L} 4.3925 + + 155 NaN NaN 148740.4 NaN 15540 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19456 80.502 NaN 435790 35 0 34000 0.261 + 17218 LYNPYWTAL 9 90 570.7899250643478 1139.5652971954955 2 570.8062744140625 MULTI HCD FTMS 0 0 0 19452 48723.55078125 0.17806983155842576 -6 0.14717864990234375 4 Unmodified _LYNPYWTAL_ ENSG00000138600|ENST00000261854|SPPL2A;ENST00000560288.1_1_15:51040303-51057772:-|nuORF;SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant 20.453626601364224 0.18364154288633264 2 [YV]AGV 5 8 36.695 0 0 3.2201 0 0 0 647.2847036479984 647.2847036479984 22.090606190045108 0 0 0 0 0.9247425010840047 1.2218487496163564 0 0 [YV]AGV 3.2201 - 1906 NaN NaN 150837.4 NaN 15541 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19457 80.506 NaN 265450 35 0 48720 0.261 + 31868 VYMSCFPFFI 10 63 627.2900664307234 1252.5655799282467 2 627.2902221679688 MULTI HCD FTMS 0 0 0 19452 92956.0234375 0.18586080737366717 18 -0.5217056274414062 5 Unmodified _VYMSCFPFFI_ REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant 20.453626601364224 0.3197956946484955 2 KVTM{I|L} 5 -1 55.712 0 0 4.4478 0 0 662.2188587873062 0 662.2188587873062 0 44.47486216526678 0 0 0 1.5010912013506126 0 0.4247425010840047 0 KVTM{I|L} 4.4478 - 101 NaN NaN 134743.7 NaN 15542 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19458 80.509 NaN 197090 35 0 18328 0.261 + -1 ASSCNYYCFL 10 72 642.7551117075857 1283.4956704819713 2 642.7550659179688 MULTI HCD FTMS 0 0 0 19452 8328.3291015625 0.05108732464441985 17 -0.49884033203125 6 2 Carbamidomethyl (C) _ASSC(Carbamidomethyl (C))NYYC(Carbamidomethyl (C))FL_ REV__ENST00000432148.5_1_9:71160487-71160714:-|nuORF 2.9952420565917617 0.4594494122822477 2 E{I|L}W{[RE]|[WV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7 -1 14.085 0 0 1.0974 0 0 291.98659549668827 0 291.98659549668827 0 2.8478133294262875 0 0 0 0.3494850021680094 0 0 0 E{I|L}W{[RE]|[WV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.0974 - 67 + NaN NaN 117079.2 NaN 15543 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19459 80.512 NaN 102120 35 0 33149 0.264 -1 0 35 421.25947631218975 840.5043996911795 2 421.25982666015625 MULTI HCD FTMS 0 0 0 19452 27348.90234375 0.06635799017298202 6 -0.17711639404296875 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8423 0 0 675.425845469303 0 675.425845469303 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8423 - 2 + NaN NaN 96879.8 NaN 15544 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19460 80.516 NaN 280940 35 0 29695 0.261 + -1 YIDEMWYE 8 69 582.7320832737743 1163.4496136143484 2 582.7315673828125 MULTI HCD FTMS 0 0 0 19452 26086.578125 0.5393772034326098 1 -0.03614044189453125 8 Oxidation (M) _YIDEM(Oxidation (M))WYE_ REV__ENSG00000169330|ENST00000305428|MINAR1;REV__ENST00000559272.1_1_15:79756054-79760723:+|nuORF 14.581692164780916 0.48650662947107914 2 [YV]P[C(Carbamidomethyl (C))S]{[{M(Oxidation (M))|F}D]|MM}YN 9 -1 + 36.844 0 0 3.1668 3.1668 87.729 0 0 0 16.116962104583344 12.2442373877631 12.2442373877631 20.087418566968157 0 0 2 0.3252574989159953 0 [YV]P[C(Carbamidomethyl (C))S]{[{M(Oxidation (M))|F}D]|MM}YN;{M(Oxidation (M))|F}Y[C(Carbamidomethyl (C))S][WC(Carbamidomethyl (C))]KN 3.1668;1.4402 -;- 129 NaN NaN 146573.5 NaN 15545 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19461 80.519 NaN 260300 35 0 58925 0.261 + -1 YFLFVCCFL 9 54 606.287509719508 1210.5604665058158 2 606.3016967773438 MULTI HCD FTMS 0 0 0 19452 26258.65625 0.24248577957863515 -2 0.0424041748046875 9 Carbamidomethyl (C) _YFLFVC(Carbamidomethyl (C))CFL_ REV__ENST00000530674.1_1_8:70550702-70570767:+|nuORF 14.581692164780916 0.23437375358055648 2 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 27.447 0 0 2.2673 0 0 0 784.3238870715904 784.3238870715904 -1.7532824288952753 0 -1.7532824288952753 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F} 2.2673 - 38 + NaN NaN 123775 NaN 15546 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19462 80.522 NaN 70922 35 0 3637.8 0.261 + -1 MWQQYDPYE 9 35 638.2540748668008 NaN 0 638.2833251953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Oxidation (M) _M(Oxidation (M))WQQYDPYE_ REV__ENSG00000163254|ENST00000282141|CRYGC;REV__ENSG00000182187|ENST00000260988|CRYGB 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103089.5 NaN 15547 3913 19452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19464 80.527 NaN 1358000 35 0 338890 0.327 + 11276 IYLTFPVAM 9 80 535.7830139758958 1069.5514750185914 2 535.7835083007812 MULTI HCD FTMS 0 0 0 19463 478445.6875 0.7162220536668024 -1 0.03614044189453125 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 137.58523961978855 0.00014495867019203413 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F} 9 0 + 103.87 0 0 9.7112 9.7112 96.227 0 0 0 17.772336398234003 88.38222205381598 17.772336398234003 15.484550065040281 0 3.1989700043360187 1.3010299956639813 1.5044321917401078 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}PG{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}PG{M(Oxidation (M))|F}{I|L};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F};[TA]YP{M(Oxidation (M))|F}[{I|L}V]{I|L}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F};[TA]YP{M(Oxidation (M))|F}[{I|L}V]{M(Oxidation (M))|F}{I|L};[Y{I|L}][VP]{M(Oxidation (M))|F}[TA]{I|L}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]G{I|L}{M(Oxidation (M))|F};[PA][YT]{M(Oxidation (M))|F}[{I|L}V]{I|L}{M(Oxidation (M))|F} 9.7112;8.2635;6.9528;4.2617;4.1725;3.9349;2.8617;2.8139;2.8139;2.6757 +;-;-;-;-;-;-;-;-;- + 466 NaN NaN 298107.1 NaN 15548 3914 19463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19465 80.532 NaN 201290 35 0 8083.2 0.261 + 21361 PTKLNTRQ 8 70 479.2775341566531 956.5405153801062 2 479.2778015136719 MULTI HCD FTMS 0 0 0 19463 169256.15625 0.16908149506559725 63 -1.7607192993164062 2 Unmodified _PTKLNTRQ_ REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF 3.5964929083625545 0.5366564765791996 2 QV 2 -1 10.005 0 0 1.046 0 0 458.2717298349874 268.12375818424067 726.3954880192281 0 0 0 0 0 0.3807196863200844 0 0 0 QV 1.046 - 26 + NaN NaN 119976.1 NaN 15549 3914 19463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19466 80.535 NaN 110240 35 0 15601 0.261 + 25271 SAVELVVAL 9 43 450.7735513539331 899.5325497746662 2 450.7732849121094 MULTI HCD FTMS 0 0 0 19463 57683.3125 0.06519377377573381 15 -0.43985748291015625 3 Unmodified _SAVELVVAL_ KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant 16.942295170755138 0.21397866736869717 2 VA{I|L} 3 6 32.435 0 0 3.6058 0 0 598.3324545586034 0 598.3324545586034 0 17.830918867322296 0 0 0 0.9247425010840047 0 0 0 + VA{I|L} 3.6058 + + 34 NaN NaN 120649.7 NaN 15550 3914 19463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19467 80.538 NaN 111480 35 0 6848.2 0.261 + 25498 SFFSPCIFPLL 11 43 635.833387313193 NaN 0 635.8192138671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SFFSPCIFPLL_ tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1 5.731851221503515 0.3258605322397891 2 RW 2 11 6.4537 0 0 0.5083 0 0 439.2047862457235 485.2435701959594 924.4483564416829 0 0 0 0 0 0 0 0 0 RW 0.5083 - 13 + NaN NaN 116516.9 NaN 15551 3914 19463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19468 80.542 NaN 130110 35 0 28637 0.264 -1 0 35 422.1973221132968 421.19004564669683 1 422.1993103027344 MULTI HCD FTMS 0 0 0 19463 36449.1328125 0.6915843671176539 -13 0.34442138671875 5 NaN NaN 2 QQ{M(Oxidation (M))|F} 3 -1 QQ + + 16.99 2.2185 0.86622 4.0337 4.0337 61.006 0 0 0 0 16.989700043360187 0 0 0 0 0 0 0 QQ{M(Oxidation (M))|F} 4.0337 - 1 + NaN NaN 108712.4 NaN 15552 3914 19463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19469 80.545 NaN 52959 35 0 5111.6 0.261 + 2469 DRFFMWIFF 9 36 436.8793763120183 NaN 0 436.87969970703125 PEAK HCD FTMS 0 0 0 19463 8383.4443359375 0.4408547356524256 -4 0.09806060791015625 6 Unmodified _DRFFMWIFF_ ENSG00000174343|ENST00000310169|CHRNA9 0.9622753412299311 0.2905837902567025 2 {M(Oxidation (M))|F} 1 8 4.6041 0 0 0.52815 0 0 453.54917513204595 268.1289461725219 721.6781213045679 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.52815 + + 3 + NaN NaN 96544.5 NaN 15553 3914 19463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19471 80.55 NaN 1961300 35 0 411120 0.327 + 17626 LYYDAIWHF 9 110 614.2952551878867 1226.5759574425733 2 614.295654296875 MULTI HCD FTMS 0 0 0 19470 1282529.5 0.07499318206323631 13 -0.38409423828125 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 131.29775728308752 0.0005262696486345744 2 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 93.783 0 0 7.6459 7.6459 87.11 0 0 0 0.5426077587999032 0.5426077587999032 0.5426077587999032 0.5426077587999032 0 2.4247425010840047 2 0.872363747448347 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDAW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]YDAWH{I|L}{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]AD{I|L}YWH{M(Oxidation (M))|F};[Y{I|L}]ADYW{I|L}H{M(Oxidation (M))|F};[Y{I|L}]YW{[DA]|[EG]}{I|L}H{M(Oxidation (M))|F};{I|L}YY[PG]P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}H{M(Oxidation (M))|F} 7.6459;7.6017;6.6648;5.86;5.8599;5.457;5.2563;4.8788;4.7249;4.7123 +;+;-;-;-;-;-;-;-;- + 5269 NaN NaN 392700.2 NaN 15554 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19472 80.554 NaN 1101200 35 0 72670 0.261 + 27671 TALNLFFKL 9 95 533.8184603104121 1065.622367687624 2 533.8187255859375 MULTI HCD FTMS 0 0 0 19470 866079.0625 0.1912733140001493 13 -0.38409423828125 2 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 179.17365725063826 1.1335045685127237E-12 2 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 123.7 0 0 11.609 11.609 95.697 0 0 0 36.483011068329375 10.752574989159953 10.752574989159953 10.752574989159953 0 2.579689690656103 1.5228787452803376 1.5431576817365436 1.916386562212267 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;TA{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};TA{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[TA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}K;TA{I|L}N{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};TA{I|L}GG{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F} 11.609;10.6;9.3033;8.2943;8.1849;7.5946;7.3208;6.5856;6.4655;5.6014 +;-;-;-;+;-;-;-;-;- + 1374 NaN NaN 255985.9 NaN 15555 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19473 80.558 NaN 726390 35 0 35422 0.261 -1 0 97 509.80379454164563 1017.5930361500913 2 509.8039855957031 MULTI HCD FTMS 0 0 0 19470 1104287.125 0.8727908163441727 -12 0.3094635009765625 3 NaN NaN 2 AVVTQ 5 -1 6.4756 0 0 0.63637 0 0 149.10500730364078 367.19700037174067 516.3020076753814 0 0 0 0 0 0 0 0.3054621874040891 0.4247425010840047 AVVTQ 0.63637 - 243 + NaN NaN 194168.1 NaN 15556 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19474 80.561 NaN 517950 35 0 69428 0.261 + 13584 KYPENFFLL 9 64 585.8131605635726 1169.6117681939452 2 585.8136596679688 MULTI HCD FTMS 0 0 0 19470 443203.59375 0.0022529259422379684 190 -4.6299285888671875 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 70.85 0 0 6.0576 6.0576 88.643 0 0 0 4.232712163289278 42.80271844005476 4.232712163289278 9.208187539523749 0 2.1861818737241734 0 0 1.0114393726401687 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.0576;5.2703;4.6584;2.9255;1.5263 +;-;-;-;- + 384 NaN NaN 170979.3 NaN 15557 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19475 80.565 NaN 184930 35 0 21545 0.261 + 16783 LYDSETKNANS 11 58 621.2853102237277 1240.5560675142553 2 621.28564453125 MULTI HCD FTMS 0 0 0 19470 118988.2734375 0.10266857695417672 14 -0.41696929931640625 5 Unmodified _LYDSETKNANS_ ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF 13.614867670302875 0.33845562336951207 2 {I|L}Y[DP][W{I|L}]Y 7 8 50.278 0 0 4.0528 0 0 0 287.10309778385005 287.10309778385005 26.69424766394343 0 0 0 0 1.7302046884880937 1.6989700043360187 0 0 {I|L}Y[DP][W{I|L}]Y 4.0528 - 142 + NaN NaN 123710.5 NaN 15558 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19476 80.568 NaN 621240 35 0 118680 0.261 + 33731 YLDRSPSACK 10 94 570.2768859978044 1138.5392190624086 2 570.7905883789062 MULTI HCD FTMS 0 0 0 19470 48699.30078125 1 0 0 6 Unmodified _YLDRSPSACK_ ENSG00000166444|ENST00000313726|DENND2B 10.073929032068715 0.4168838835836452 2 [YV]AGVGPY[WQ] 10 9 + 47.082 0 0 4.1353 4.1353 83.825 0 0 0 7.608988604210012 3.5463498048791564 3.5463498048791564 6.5321251377534395 0 0.21876531584792502 1.6989700043360187 0 0 [YV]AGVGPY[WQ];[YV]QVGPY[WQ];EYVP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GAP{M(Oxidation (M))|F};E[KT]HPGVGAP{M(Oxidation (M))|F};[YV]AG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VG][WQ];EYVP{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QP{M(Oxidation (M))|F};E[YK][TA]GVGAP{M(Oxidation (M))|F};[YV]AGVEEVHH;[Y{I|L}]GGVGPY[WQ];E[YK][QT]VGAP{M(Oxidation (M))|F} 4.1353;3.5616;3.467;3.1774;2.9797;2.8933;2.8894;2.8777;2.7428;2.7309 -;-;-;-;-;-;-;-;-;- 2566 NaN NaN 196501.8 NaN 15559 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19477 80.571 NaN 248750 35 0 16780 0.261 -1 0 66 512.2815524109606 1022.5485518887211 2 512.2814331054688 MULTI HCD FTMS 0 0 0 19470 263830.90625 0.9883381425900823 -12 0.3094635009765625 7 NaN NaN 2 PP 2 -1 4.6927 0 0 0.45893 0 0 577.3113215193837 248.09646021060783 825.4077817299915 0 0 0 0 0 0 0 0 0 PP 0.45893 - 251 + NaN NaN 140446.1 NaN 15560 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19478 80.575 NaN 246550 35 0 42764 0.261 + 18685 MYPAIFDQL 9 61 557.2679052884582 1112.5212576437164 2 557.2681884765625 MULTI HCD FTMS 0 0 0 19470 122977.921875 1 0 0 8 Oxidation (M) _M(Oxidation (M))YPAIFDQL_ ENSG00000061987|ENST00000393630|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2 49.93300154707207 0.03166451819912738 2 {I|L}{M(Oxidation (M))|F}DQ{I|L} 5 4 53.954 0 0 4.8497 0 0 478.18770034004064 0 478.18770034004064 0 46.50637524615391 0 0 0 1.4247425010840047 0 0 0.3252574989159953 + {I|L}{M(Oxidation (M))|F}DQ{I|L} 4.8497 + + 55 NaN NaN 135243.3 NaN 15561 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19479 80.578 NaN 145840 35 0 30285 0.261 + 9621 HTFTSFENSF 10 50 608.7673099040644 1215.5200668749287 2 608.767822265625 MULTI HCD FTMS 0 0 0 19470 36714.3515625 0.328568932546715 8 -0.23279571533203125 9 Unmodified _HTFTSFENSF_ REV__ENSG00000134970|ENST00000456936|TMED7;REV__ENST00000503010.1_1_5:114951908-114961566:-|nuORF;REV__nc|ENSG00000134970|Q9Y3B3-2|TMED7;REV__nc|ENSG00000243414|Q86XR7-2|TICAM2 5.296884461304476 0.4472664531305844 2 WN 2 -1 19.464 0 0 1.6013 0 0 897.379747390123 0 897.379747390123 0 9.859856381998782 0 0 0 0 0 0 0 WN 1.6013 - 12 NaN NaN 114274.8 NaN 15562 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19480 80.581 NaN 239690 35 0 35712 0.261 + 34738 YPVSGCFDYL 10 71 582.2570523646432 1162.4995517960863 2 582.2565307617188 MULTI HCD FTMS 0 0 0 19470 91606.0859375 0.7816692577695254 -8 0.206207275390625 10 Unmodified _YPVSGCFDYL_ DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1 24.020572477871973 0.2864316864133941 2 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L} 9 3 + 54.816 0 0 4.7154 4.7154 90.238 0 0 0 24.13734275855269 38.61818737241734 24.13734275855269 30.956837818197794 0 0.8494850021680094 1.6989700043360187 0 0 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L};[YV]P[C(Carbamidomethyl (C))S][RH][MN] 4.7154;2.0524 -;- 101 NaN NaN 125888.8 NaN 15563 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19481 80.585 NaN 103910 35 0 25838 0.262 + 15040 LLQEEPLF 8 39 494.7712034890506 987.5278540449012 2 494.7712097167969 MULTI HCD FTMS 0 0 0 19470 41838.58203125 0.3015561396722002 8 -0.23279571533203125 11 Unmodified _LLQEEPLF_ ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.568 0 0 822.4494218933372 0 822.4494218933372 0 -2.7030375612038426 -2.7030375612038426 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.568 + + 8 + NaN NaN 109573.9 NaN 15564 3915 19470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19483 80.59 NaN 1270600 35 0 63339 0.327 + 14843 LKEQKERA 8 100 501.2906072263501 1000.5666615195003 2 501.2908630371094 MULTI HCD FTMS 0 0 0 19482 1510597.375 0.8545393913093345 -13 0.34894561767578125 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 2 Q 1 7 9.3532 0 0 0.93479 0 0 414.24689788105894 455.2499178522094 869.4968157332684 0 0 0 0 0 0.7134679910804405 0 0 0 + Q 0.93479 + + 41 + NaN NaN 296033 NaN 15565 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19484 80.594 NaN 1088900 35 0 202350 0.261 + 23155 RFILNLPTF 9 89 560.8296409146644 1119.6447288961288 2 560.829833984375 MULTI HCD FTMS 0 0 0 19482 491367.5 0.11014305534494216 14 -0.40032958984375 2 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 76.82478488871298 0.006879825292024087 2 DN{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PT{M(Oxidation (M))|F} 8 5 60.091 0 0 5.367 0 0 164.25295751116624 0 164.25295751116624 0 32.55546788076286 0 0 0 1.5 0 1.4436726795685342 0.3054621874040891 DN{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PT{M(Oxidation (M))|F} 5.367 - 1433 + NaN NaN 267595.4 NaN 15566 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19485 80.597 NaN 493150 35 0 50839 0.261 + 29142 TYIKFINLF 9 78 579.831606378513 1157.648659823826 2 579.831787109375 MULTI HCD FTMS 0 0 0 19482 301207.625 0.3859117278097165 8 -0.22283935546875 3 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 74.19965305603844 0.007729275404663812 2 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 102.13 0 0 8.8224 8.8224 91.084 0 0 0 10 10 10 6.237125054200234 0 2.1989700043360187 2 0.7742275032520141 0.3807196863200844 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[K{I|L}]YT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F} 8.8224;8.2837;8.027;7.4882;6.0986;5.5887;5.4322;5.388;5.3032;5.05 +;-;-;-;-;-;-;-;-;- + 590 NaN NaN 164976.2 NaN 15567 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19486 80.601 NaN 739340 35 0 88236 0.261 + 26137 SPMDIFDMF 9 93 567.7278554911873 1133.4411580491744 2 567.7279663085938 MULTI HCD FTMS 0 0 0 19482 259183.15625 0.7623621194353021 1 -0.02614593505859375 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 61.357469665136826 0.01568246967499496 2 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS + + 51.498 13.812 3.0959 4.5435 4.5435 61.64 0 0 0 0 40.52887198244136 0 0 0 1.7302046884880937 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5435 - 1231 + NaN NaN 228315.8 NaN 15568 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19487 80.604 NaN 634110 35 0 56155 0.261 + 28886 TVYVSNLPF 9 82 520.2784727267518 1038.5423925203036 2 520.7947998046875 MULTI HCD FTMS 0 0 0 19482 29657.484375 0.04760594213806292 16 -0.4560089111328125 5 Unmodified _TVYVSNLPF_ ENSG00000139168|ENST00000266529|ZCRB1;ENST00000548022.1_1_12:42717790-42719777:-|nuORF 17.11289562659939 0.2125047172822487 2 YTVA[PA]AVT{M(Oxidation (M))|F} 10 7 + 40.198 0 0 3.8707 3.8707 81.932 0 0 0 12.385606273598306 8.365618417184997 8.365618417184997 2.5257498915995313 0 0 0 0.23965182871044374 0 YTVA[PA]AVT{M(Oxidation (M))|F};YVTA[PA]AVT{M(Oxidation (M))|F};YTVA[PA]ATV{M(Oxidation (M))|F};YVTA[PA]ATV{M(Oxidation (M))|F};YTVA[PA]A{M(Oxidation (M))|F}{[TV]|[{I|L}S]};YT[QP]{I|L}AVT{M(Oxidation (M))|F};YVTA[PA]A{M(Oxidation (M))|F}{[TV]|[{I|L}S]};YV{I|L}A{[QG]|[NA]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};YV{I|L}QQ{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};YT[QP]{I|L}ATV{M(Oxidation (M))|F} 3.8707;3.6275;3.35;3.1068;3.0651;2.9518;2.8219;2.565;2.5209;2.4312 -;-;-;-;-;-;-;-;-;- 1046 + NaN NaN 187064.8 NaN 15569 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19488 80.607 NaN 353580 35 0 46323 0.261 + 31674 VYKDLLVLF 9 81 555.3341230533754 1108.6536931735507 2 555.3339233398438 MULTI HCD FTMS 0 0 0 19482 149142.15625 0.14908447919211254 8 -0.22283935546875 6 Unmodified _VYKDLLVLF_ ENSG00000037637|ENST00000375592|FBXO42 51.629811660486645 0.02929079705179888 2 [YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F} 9 0 + 72.611 0 0 6.5495 6.5495 90.406 0 0 0 0 0 0 9.771212547196626 0 2.6747425010840047 1.6989700043360187 0 0 + + [YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[YV]K{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}V{M(Oxidation (M))|F};[YV][VS]{[VA]|[{I|L}G]}{I|L}V{I|L}{M(Oxidation (M))|F};[Y{I|L}][TA]{[VA]|[{I|L}G]}{I|L}V{I|L}{M(Oxidation (M))|F};[YK]V{NN|[MP]|[D{I|L}]|[EV]}{I|L}V{I|L}{M(Oxidation (M))|F};[YV][VS]{[VA]|[{I|L}G]}{I|L}{I|L}V{M(Oxidation (M))|F};[Y{I|L}][TA]{[VA]|[{I|L}G]}{I|L}{I|L}V{M(Oxidation (M))|F};[YK]V{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]{[VA]|[{I|L}G]}{I|L}V{I|L}{M(Oxidation (M))|F};[{I|L}V]{NN|[MP]|[D{I|L}]|[EV]}[YK]V{I|L}{M(Oxidation (M))|F} 6.5495;5.6681;5.2937;4.6644;4.5465;4.4124;3.783;3.6651;3.1589;2.4738 +;-;-;-;-;-;-;-;-;- + 329 + NaN NaN 155013.1 NaN 15570 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19489 80.611 NaN 146010 35 0 5607.6 0.261 + 20933 PLAFLVIMA 9 70 487.79076122415506 973.5669695151101 2 487.79095458984375 MULTI HCD FTMS 0 0 0 19482 70460.71875 0.07920698135083004 65 -1.7963485717773438 7 Unmodified _PLAFLVIMA_ ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.3455 0 0 808.4885983987024 0 808.4885983987024 0 1.6722687557546578 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3455 + + 33 + NaN NaN 118808.3 NaN 15571 3916 19482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19491 80.616 NaN 1444300 35 0 267020 0.327 + 11086 IYGYTFYSI 9 72 563.7753001015581 1125.536047269916 2 563.7584838867188 MULTI HCD FTMS 0 0 0 19490 25483.005859375 0.11080400300457358 5 -0.14765167236328125 1 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 71.13359017698441 0.008721403657255008 2 [Y{I|L}]STA{M(Oxidation (M))|F}DY 8 6 56.208 0 0 4.9939 0 0 0 162.0905445178419 162.0905445178419 5.29840696594043 0 0 0 0 0 1.3010299956639813 2.004432191740108 0 [Y{I|L}]STA{M(Oxidation (M))|F}DY 4.9939 - 1567 NaN NaN 308409 NaN 15572 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19492 80.62 NaN 885460 35 0 85105 0.261 + 7636 FYINSGTLQF 10 86 595.298106010358 1188.5816590875158 2 595.2982177734375 MULTI HCD FTMS 0 0 0 19490 422150.875 0.6496724039656635 2 -0.052459716796875 2 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 147.24064527209634 2.7126949688607576E-07 2 [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 104.73 0 0 8.8111 8.8111 92.472 0 0 0 7.269987279362624 95.34183088082841 7.269987279362624 9.164539485499262 0 2.6549471895720984 0 1.4143943297944483 1.066901560044258 + + [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGTP[YK];[Y{M(Oxidation (M))|F}]{I|L}GGSGTP[YK];[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SGT{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGTP[YK] 8.8111;8.0401;7.4628;6.6647;6.3744;5.8937;5.2676;4.2396;3.5876;3.1212 +;-;-;-;-;-;-;-;-;- + 1806 NaN NaN 225368 NaN 15573 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19493 80.624 NaN 667070 35 0 41916 0.261 + 19669 NVQVLAALAF 10 95 523.3037745104898 NaN 0 523.3037109375 PEAK HCD FTMS 0 0 0 19490 439228.5 0.6775153482380509 -7 0.18657684326171875 3 Unmodified _NVQVLAALAF_ REV__ENSG00000187824|ENST00000341871|TMEM220 7.910154910731844 0.33341429274560913 2 Q 1 -1 7.7423 0 0 0.74118 0 0 546.3257722079086 367.19660364322505 913.5223758511336 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.74118 + + 54 + NaN NaN 188937.6 NaN 15574 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19494 80.627 NaN 166670 35 0 12187 0.263 + 8095 GKPHGRGV 8 61 404.2329439970461 806.4513350608922 2 404.23297119140625 MULTI HCD FTMS 0 0 0 19490 96369.5390625 0.045344225847273406 15 -0.42986297607421875 4 Unmodified _GKPHGRGV_ ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF 2.302733041254933 0.5385759549224092 2 RQ 2 7 10.005 0 0 1.2406 0 0 282.1687437752303 237.10553919010002 519.2742829653304 0 0 0 0 0 0.3807196863200844 0 0 0 RQ 1.2406 - 17 + NaN NaN 114186.9 NaN 15575 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19495 80.63 NaN 482070 35 0 81371 0.261 + 4880 FAFEGIGDEDL 11 62 606.7743788872351 1211.5342048412701 2 606.7749633789062 MULTI HCD FTMS 0 0 0 19490 108301.1171875 0.5530901895889538 -2 0.0656280517578125 5 Unmodified _FAFEGIGDEDL_ ENSG00000115234|ENST00000233575|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17 63.227496030279354 0.027100857025507283 2 EG{I|L}GDED{I|L} 8 3 68.225 0 0 5.6313 0 0 365.1731129376969 0 365.1731129376969 0 46.17336295911841 0 0 0 2.9119543704721593 0 0 0 + EG{I|L}GDED{I|L} 5.6313 + + 405 NaN NaN 161751.1 NaN 15576 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19496 80.634 NaN 203060 35 0 47777 0.263 + 34622 YPPVQVLF 8 43 481.77099022523265 961.5274275172653 2 481.7709655761719 MULTI HCD FTMS 0 0 0 19490 68968.53125 0.7309643543621769 1 -0.029571533203125 6 Unmodified _YPPVQVLF_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 19.438996006549623 0.45076845602799126 2 QV{I|L}{M(Oxidation (M))|F} 4 4 43.047 0 0 4.477 0 0 456.225389549025 0 456.225389549025 0 40.828956512079344 0 0 0 1.5 0 0 0 + QV{I|L}{M(Oxidation (M))|F} 4.477 + + 13 NaN NaN 122143.5 NaN 15577 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19497 80.637 NaN 180710 35 0 27434 0.261 + 17081 LYLCHSFCY 9 62 574.7494383224789 1147.4843237117577 2 574.7498779296875 MULTI HCD FTMS 0 0 0 19490 64999.296875 0.15580810975002266 5 -0.14765167236328125 7 Unmodified _LYLCHSFCY_ REV__ENSG00000146802|ENST00000312814|TMEM168;REV__TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant 18.13498045792455 0.20367413111508956 2 {I|L}Y{[MG]|[TS]}MHSY{M(Oxidation (M))|F} 9 -1 + 84.575 0 0 7.3705 7.3705 95.475 0 0 0 80.59562510389476 16.478174818886373 16.478174818886373 48.66750554106318 0 1.3494850021680094 2 0.4247425010840047 0 {I|L}Y{[MG]|[TS]}MHSY{M(Oxidation (M))|F};{I|L}Y{[MG]|[TS]}A{M(Oxidation (M))|F}[MN]{[DS]|[MA]|[CV]|TT} 7.3705;3.1292 -;- 161 + NaN NaN 132494.1 NaN 15578 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19498 80.64 NaN 172790 35 0 10473 0.261 + 29886 VFDIHVIDF 9 75 552.79026000927 NaN 0 552.790283203125 PEAK HCD FTMS 0 0 0 19490 33593.58984375 0.678539186534941 -8 0.2161102294921875 8 Unmodified _VFDIHVIDF_ ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 46.020951573049366 0.05896589607441476 2 D 1 8 17.179 0 0 1.5567 0 0 823.459718161315 162.05574976138908 985.515467922704 0 0 0 0 0 0.8807196863200843 0 0.28872548999643577 0 + D 1.5567 + + 63 + NaN NaN 136018.2 NaN 15579 3917 19490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19500 80.645 NaN 308880 35 0 31771 0.327 -1 TYNMVLNLL 9 71 548.7887061351031 1095.562859337006 2 548.7890014648438 MULTI HCD FTMS 0 0 0 19499 62324.84375 0.4106688086950649 3 -0.0886077880859375 1 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 32.78568957990786 0.09846250359632436 2 {I|L}N{I|L}{I|L} 4 -1 46.186 0 0 4.2157 0 0 624.2576845630252 0 624.2576845630252 0 22.629106573952456 0 0 0 1.4247425010840047 0 0 0 {I|L}N{I|L}{I|L} 4.2157 + + 144 NaN NaN 140912.7 NaN 15580 3918 19499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19501 80.65 NaN 229710 35 0 25165 0.261 + 32344 VYVGFQVQL 9 60 526.7922891219899 1051.5700253107798 2 526.7928466796875 MULTI HCD FTMS 0 0 0 19499 45997 0.011664015888440104 23 -0.65216064453125 2 Unmodified _VYVGFQVQL_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 58.678817012210395 0.019429721296335044 2 VQ{M(Oxidation (M))|F}GVM{I|L} 7 5 60.17 0 0 5.7219 0 0 259.1529713361344 0 259.1529713361344 0 43.179957464582586 0 0 0 2.3494850021680094 0 0 0 VQ{M(Oxidation (M))|F}GVM{I|L} 5.7219 - 172 NaN NaN 150109.7 NaN 15581 3918 19499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19502 80.653 NaN 267460 35 0 36904 0.261 + 19925 NYFPFQWKL 9 80 621.8173968209593 1241.6202407087185 2 622.3172607421875 MULTI HCD FTMS 0 0 0 19499 69276.0625 0.20963185341579407 23 -0.65216064453125 3 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 15.847184025352803 0.2234401846867398 2 [YN]{M(Oxidation (M))|F} 3 6 35.986 0 0 2.8983 0 0 0 814.4236347949862 814.4236347949862 13.310384486277798 0 0 0 0 0.7742275032520141 1.6989700043360187 0 0.2302046884880938 + [YN]{M(Oxidation (M))|F} 2.8983 + + 262 NaN NaN 152736.4 NaN 15582 3918 19499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19503 80.657 NaN 142230 35 0 11811 0.263 + 31327 VWSTFSATL 9 52 506.2609645763475 1010.507376219495 2 506.2611083984375 MULTI HCD FTMS 0 0 0 19499 39439.36328125 0.3436307997635812 3 -0.0886077880859375 4 Unmodified _VWSTFSATL_ REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF 7.289230182591677 0.29575926068275815 2 S{I|L} 2 -1 14.693 0 0 1.454 0 0 792.3749867169937 0 792.3749867169937 0 5.088643834802156 0 0 0 0 0 0 0 S{I|L} 1.454 - 8 NaN NaN 115464.1 NaN 15583 3918 19499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19504 80.66 NaN 129510 35 0 13381 0.261 + 29718 VDIADVAYYF 10 50 588.2848124789739 1174.5550720247477 2 588.2846069335938 MULTI HCD FTMS 0 0 0 19499 46025.91015625 0.7072296693497774 -1 0.029571533203125 5 Unmodified _VDIADVAYYF_ ENSG00000119888|ENST00000263735|EPCAM 10.073929032068715 0.4168838835836452 2 YY{M(Oxidation (M))|F} 3 7 34.693 0 0 2.9537 0 0 683.3495350568375 0 683.3495350568375 0 25.228787452803374 0 0 0 1 0 0 0 + YY{M(Oxidation (M))|F} 2.9537 + + 32 NaN NaN 110115.4 NaN 15584 3918 19499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19505 80.663 NaN 116110 35 0 14745 0.261 + 24271 RYFLPPYTF 9 34 602.3133766428713 1202.6122003525425 2 602.3133544921875 MULTI HCD FTMS 0 0 0 19499 37530.69140625 0.4947875559283569 12 -0.34461212158203125 6 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.24021115267848145 2 T 1 8 10.485 0 0 0.87181 0 0 165.071310775011 933.4667932845852 1098.5381040595962 0 0 0 0 0 0.5 0 0 0 + T 0.87181 + + 8 + NaN NaN 107186.7 NaN 15585 3918 19499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19507 80.668 NaN 1787700 35 0 145000 0.327 + 15162 LMSLIINTF 9 105 534.2939527474999 1066.5733525617998 2 534.2942504882812 MULTI HCD FTMS 0 0 0 19506 686381.3125 0.3600134077699502 -8 0.21952056884765625 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 134.295615338601 0.00034446139420701925 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 75.063 0 0 7.0378 7.0378 91.824 0 0 0 4.558794781168572 11.657804104845674 4.558794781168572 12.09544243948811 0 2.274227503252014 0 1.4361818737241734 0.28872548999643577 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KSEM;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[QT]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}KA{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}A{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}SEM;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}SEM 7.0378;5.9037;4.4231;4.338;4.0987;3.691;3.5337;2.9008;2.8157;2.7435 +;-;-;-;-;-;-;-;-;- + 4260 NaN NaN 353497.5 NaN 15586 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19508 80.673 NaN 115600 35 0 6005.3 0.261 + 23010 RARDVEIV 8 58 479.2775341566531 956.5405153801062 2 479.2773742675781 MULTI HCD FTMS 0 0 0 19506 100147.1015625 0.10004375636217787 68 -1.8880691528320312 2 Unmodified _RARDVEIV_ REV__tr|U7SGM1|U7SGM1_FUSNUHTHlysR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02239PE=3SV=1 4.3292370932331545 0.5355693454741696 2 V 1 -1 7.4743 0 0 0.78138 0 0 630.3471082529562 224.09723840885002 854.4443466618062 0 0 0 0 0 0.3494850021680094 0 0 0 V 0.78138 + + 30 + NaN NaN 107215.8 NaN 15587 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19509 80.676 NaN 278550 35 0 69632 0.261 + 17318 LYPQFMFHL 9 62 598.3021471797576 1194.5897414263152 2 598.3024291992188 MULTI HCD FTMS 0 0 0 19506 101969.0078125 0.0339722556587869 41 -1.1445465087890625 3 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 50.855029805455786 0.030374663808198754 2 M{M(Oxidation (M))|F}H{I|L} 4 5 34.641 0 0 2.8998 0 0 648.324022361525 0 648.324022361525 0 27.65153777800478 0 0 0 1.1989700043360187 0 0 0 + M{M(Oxidation (M))|F}H{I|L} 2.8998 + + 177 NaN NaN 129434.4 NaN 15588 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19510 80.679 NaN 161020 35 0 21225 0.261 + -1 GEMKCAQLMW 10 51 643.2729726053542 1284.5313922775083 2 643.7758178710938 MULTI HCD FTMS 0 0 0 19506 66586.109375 0.8818409621570873 -10 0.2685699462890625 4 Carbamidomethyl (C),2 Oxidation (M) _GEM(Oxidation (M))KC(Carbamidomethyl (C))AQLM(Oxidation (M))W_ REV__ENST00000533968.1_1_11:47397254-47399953:-|nuORF 3.944395688203298 0.4544253912184634 2 WV 2 -1 10.969 0 0 0.85394 0 0 164.04238440069918 832.3209932916624 996.3633776923616 0 0 0 0 0 0 0 0 0 WV 0.85394 - 21 + NaN NaN 129110.5 NaN 15589 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19511 80.683 NaN 120840 35 0 5792.7 0.262 -1 FCHLFLQM 8 59 527.74635546732 1053.4781580014399 2 527.7463989257812 MULTI HCD FTMS 0 0 0 19506 27766.77734375 0.2841704593799824 4 -0.11470794677734375 5 Oxidation (M) _FCHLFLQM(Oxidation (M))_ ENST00000372745.1_1_10:75886108-75888938:-|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4699 0 0 888.3994511916727 0 888.3994511916727 0 2.2969624387961556 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4699 + + 33 + NaN NaN 106707.5 NaN 15590 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19512 80.686 NaN 203600 35 0 22798 0.261 + 21326 PSPTFVPPTF 10 56 545.2849322348478 1088.5553115364955 2 545.284912109375 MULTI HCD FTMS 0 0 0 19506 105901.828125 0.36330043874460255 -6 0.17711639404296875 6 Unmodified _PSPTFVPPTF_ ENST00000495068.5_1_15:91478554-91479518:+|nuORF;ENST00000557212.5_1_15:91478554-91479518:+|nuORF 18.1463463914782 0.3413772152514074 2 N{I|L}{I|L}{I|L}S{[QN]|[E{I|L}]|[KN]} 7 10 54.697 0 0 5.0248 0 0 288.10789687324376 0 288.10789687324376 0 22.542644353703523 0 0 0 2.110924374808178 0 0.4247425010840047 0 N{I|L}{I|L}{I|L}S{[QN]|[E{I|L}]|[KN]} 5.0248 - 194 NaN NaN 120130.3 NaN 15591 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19513 80.689 NaN 136470 35 0 18634 0.261 + 16207 LPVSEVASIL 10 51 514.3050710281534 1026.5955891231067 2 514.30615234375 MULTI HCD FTMS 0 0 0 19506 35961.109375 0.5611487023543995 -1 0.02288818359375 7 Unmodified _LPVSEVASIL_ ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1 41.8396318013385 0.12944265636084 2 VAS{I|L}{I|L} 5 5 54.112 0 0 5.271 0 0 525.2783070294937 0 525.2783070294937 0 30.924778212679485 0 0 0 1.305462187404089 0 0.8494850021680094 0 + VAS{I|L}{I|L} 5.271 + + 33 NaN NaN 118226.8 NaN 15592 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19514 80.696 NaN 123220 35 0 13382 0.261 + 25272 SAVELVVAL 9 35 450.7735513539331 899.5325497746662 2 450.7734680175781 MULTI HCD FTMS 0 0 0 19506 66440.8046875 0.075091505715359 20 -0.5801849365234375 8 Unmodified _SAVELVVAL_ KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant 11.640296217721598 0.25978676193971967 2 VA{I|L} 3 6 27.435 0 0 3.0499 0 0 598.3324615575694 0 598.3324615575694 0 24.336068845642203 0 0 0 0.4247425010840047 0 0 0 + VA{I|L} 3.0499 + + 8 NaN NaN 106990.1 NaN 15593 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19515 80.699 NaN 158910 35 0 11390 0.261 + 31101 VTIESCAPTLF 11 55 590.7981152112271 NaN 0 590.7987060546875 PEAK HCD FTMS 0 0 0 19506 35249.0078125 0.5783807447118078 -4 0.1180877685546875 9 Unmodified _VTIESCAPTLF_ ENSG00000174611|ENST00000423778|KY;nc|ENSG00000174611|Q8NBH2-3|KY 12.240655878213236 0.3073969278659688 2 TC(Carbamidomethyl (C)) 2 9 12.959 0 0 1.0986 0 0 476.26355376156465 439.21222864322505 915.4757824047897 0 0 0 0 0 0.5 0 0 0 TC(Carbamidomethyl (C)) 1.0986 - 18 + NaN NaN 120036 NaN 15594 3919 19506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19517 80.704 NaN 1038600 35 0 208530 0.327 + 17627 LYYDAIWHF 9 94 614.2952551878867 1226.5759574425733 2 614.295654296875 MULTI HCD FTMS 0 0 0 19516 535464.875 0.031310168584303966 18 -0.5178451538085938 1 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 117.59872219059416 0.0017018906413822257 2 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 94.351 0 0 7.6923 7.6923 88.689 0 0 0 4.195925227640984 4.195925227640984 4.195925227640984 4.195925227640984 0 2.4247425010840047 2 0.9291746928241126 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};{I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]ADY{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]AE[YV]WH{M(Oxidation (M))|F};[Y{I|L}]YD[WH]A{I|L}{M(Oxidation (M))|F};{I|L}YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F};[Y{I|L}][DV][{M(Oxidation (M))|F}T]WH{M(Oxidation (M))|F} 7.6923;7.3502;6.0071;5.7523;5.1034;4.8243;4.8029;4.6599;4.3645;4.1296 +;+;-;-;-;-;-;-;-;- + 1821 NaN NaN 256854 NaN 15595 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19518 80.709 NaN 931470 35 0 53606 0.262 + 16556 LTTTRRAVT 9 108 509.80379454164563 1017.5930361500913 2 509.803955078125 MULTI HCD FTMS 0 0 0 19516 592707.0625 0.4684554127463286 -7 0.21329498291015625 2 Unmodified _LTTTRRAVT_ ENSG00000120594|ENST00000377252|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;nc|ENSG00000120594|Q6UX71-3|PLXDC2 4.3292370932331545 0.3181982124262546 2 {I|L} 1 8 5.4846 0 0 0.53897 0 0 132.1517785659144 769.3348705276074 901.4866490935219 0 0 0 0 0 0 0 0 0 + {I|L} 0.53897 + + 564 + NaN NaN 233366.3 NaN 15596 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19519 80.712 NaN 322640 35 0 50018 0.261 + 34739 YPVSGCFDYL 10 70 582.2570523646432 1162.4995517960863 2 582.2582397460938 MULTI HCD FTMS 0 0 0 19516 101805.8984375 0.8687036483852644 -3 0.0886383056640625 3 Unmodified _YPVSGCFDYL_ DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1 49.93300154707207 0.07803319134556608 2 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L} 9 3 + 63.241 0 0 5.4401 5.4401 91.454 0 0 0 24.13734275855269 48.54811556341673 24.13734275855269 32.55063163131986 0 1.392159058960253 1.6989700043360187 0.4247425010840047 0 [YV]P[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F}DY{I|L};[YV]P[C(Carbamidomethyl (C))S][RH][MN] 5.4401;2.64 -;- 116 NaN NaN 147349 NaN 15597 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19520 80.716 NaN 195280 35 0 51776 0.263 + 15706 LPESIGALL 9 48 456.77357512800546 911.532597322811 2 456.77374267578125 MULTI HCD FTMS 0 0 0 19516 93514.9609375 0.7769072575790372 -1 0.0361785888671875 4 Unmodified _LPESIGALL_ ENSG00000137269|ENST00000370888|LRRC1 42.09456458481378 0.05572955244001856 2 PQ{I|L}{I|L} 4 6 43.928 0 0 4.8191 0 0 442.24315137730156 0 442.24315137730156 0 29.323806533759438 0 0 0 1.5 0 0 0 PQ{I|L}{I|L} 4.8191 - 60 + NaN NaN 145565.7 NaN 15598 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19521 80.719 NaN 371800 35 0 56956 0.261 + 20683 PFLPKPLFF 9 70 553.3257789608928 1104.6370049885854 2 553.326171875 MULTI HCD FTMS 0 0 0 19516 67257.9609375 0.517412897946977 -3 0.0886383056640625 5 Unmodified _PFLPKPLFF_ ENSG00000160208|ENST00000340648|RRP1B;nc|ENSG00000160208|Q14684-2|RRP1B 64.23631603340823 0.01165516075559909 2 P{M(Oxidation (M))|F}{I|L}PK[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 54.006 0 0 4.8891 4.8891 82.777 0 0 0 40.51161341931383 16.478174818886373 16.478174818886373 1.5331463063656656 0 2.2614393726401687 0 0 0 + + P{M(Oxidation (M))|F}{I|L}PK[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}PK[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8891;4.7503 +;+ + 98 + NaN NaN 155224.9 NaN 15599 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19522 80.722 NaN 153320 35 0 13428 0.261 -1 TPQFPDMIL 9 48 539.26788511357 1076.5212172939398 2 539.2682495117188 MULTI HCD FTMS 0 0 0 19516 31329.765625 0.001608346462956316 182 -4.3973541259765625 6 Oxidation (M) _TPQFPDM(Oxidation (M))IL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4123 0 0 832.3437708036053 0 832.3437708036053 0 12.474250108400469 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4123 + + 11 NaN NaN 117354.4 NaN 15600 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19523 80.726 NaN 221860 35 0 17252 0.261 + 30301 VKLTVYTNF 9 67 542.8081214668638 NaN 0 542.807861328125 PEAK HCD FTMS 0 0 0 19516 14046.6748046875 0.14372339670389114 -6 0.177154541015625 7 Unmodified _VKLTVYTNF_ REV__ENSG00000130477|ENST00000519716|UNC13A;REV__ENSG00000198722|ENST00000635942|UNC13B;REV__nc|ENSG00000198722|O14795-2|UNC13B;REV__nc|ENSG00000198722|O14795|UNC13B;REV__UNC13A|p.K404Sfs*100|1|0.23|ENSG00000130477|chr19:17655957-17655957|G/-|frameshift_variant;REV__UNC13A|p.P389Qfs*115|1|0.36|ENSG00000130477|chr19:17656000-17656000|G/-|frameshift_variant 8.745405648335112 0.25286782695573473 2 AVN 3 -1 8.3942 0 0 0.77466 0 0 634.375056982797 162.05613123111564 796.4311882139126 0 0 0 0 0 0.4247425010840047 0 0 0.28872548999643577 AVN 0.77466 - 73 + NaN NaN 135710.4 NaN 15601 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19524 80.729 NaN 76022 35 0 8287.6 0.261 -1 MLGIFFWWR 9 40 636.321533203125 NaN 0 636.321533203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _M(Oxidation (M))LGIFFWWR_ ENST00000496527.1_1_3:184098136-184098919:+|nuORF 4.75600775471527 0.27219989241163056 2 {I|L} 1 -1 6.9897 0 0 0.55053 0 0 149.11185312312233 1004.4127901666624 1153.5246432897848 0 0 0 0 0 0 0 0 0 {I|L} 0.55053 + + 6 + NaN NaN 118906.3 NaN 15602 3920 19516 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19526 80.734 NaN 1410600 35 0 69804 0.327 + 26380 SSRQKLSPV 9 100 501.2906072263501 1000.5666615195003 2 501.2908020019531 MULTI HCD FTMS 0 0 0 19525 1598247.25 0.9041226039313208 -8 0.24283599853515625 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 10.073929032068715 0.27331982688540024 2 QV 2 -1 9.068 0 0 0.90629 0 0 546.3257990938095 224.0974062555297 770.4232053493391 0 0 0 0 0 0.5 0 0 0 QV 0.90629 - 85 + NaN NaN 307718.4 NaN 15603 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19527 80.738 NaN 535930 35 0 68094 0.261 + 13585 KYPENFFLL 9 75 585.8131605635726 1169.6117681939452 2 585.8136596679688 MULTI HCD FTMS 0 0 0 19525 294223.375 0.0014956184554862043 196 -4.726371765136719 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 63.960520009940105 0.0120409805053046 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 68.522 0 0 5.8586 5.8586 88.327 0 0 0 1.7120467177745269 45.334778045573074 1.7120467177745269 9.208187539523749 0 2.1307196863200843 0 0 1.4361818737241734 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}E{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YV][QT]{[WT]|[RM]}{M(Oxidation (M))|F}{I|L}{I|L} 5.8586;5.0713;5.0215;4.4948;3.7075;3.6578;3.4091;2.6218;2.5721;1.2956 +;-;-;-;-;-;-;-;-;- + 815 NaN NaN 182209.7 NaN 15604 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19528 80.742 NaN 993900 35 0 228670 0.261 + -1 MLKMDLPEF 9 104 570.2768859978044 1138.5392190624086 2 570.7902221679688 MULTI HCD FTMS 0 0 0 19525 31287.123046875 0.6424552826212453 6 -0.16739654541015625 3 Oxidation (M) _MLKM(Oxidation (M))DLPEF_ REV__ENSG00000166508|ENST00000303887|MCM7;REV__nc|ENSG00000166508|P33993-3|MCM7 12.531546534597751 0.2520865569484384 2 [YV]AGVG[NS]VK 10 -1 41.493 0 0 3.6444 0 0 0 160.98902309977112 160.98902309977112 1.1523403976488567 0 0 0 0 0 1.6989700043360187 0.5796896906561032 0 [YV]AGVG[NS]VK 3.6444 - 2446 NaN NaN 266477.6 NaN 15605 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19529 80.745 NaN 786720 35 0 104560 0.261 -1 0 90 566.2980512400009 1130.5815495468016 2 566.2984008789062 MULTI HCD FTMS 0 0 0 19525 270943 0.7584170556573221 15 -0.42595672607421875 4 NaN NaN 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 54.614 0 0 4.8306 0 0 291.15771837044815 0 291.15771837044815 0 15.726825097560422 0 0 0 2.2614393726401687 0 0.6549471895720985 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.8306 - 860 NaN NaN 206488.5 NaN 15606 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19530 80.748 NaN 741910 35 0 122060 0.261 -1 RITCLTPIF 9 91 560.8111976600297 1119.6078423868594 2 560.8294677734375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _RITC(Carbamidomethyl (C))LTPIF_ ENSG00000188107|ENST00000503581|EYS;GPI-EYS|1|fusion;GPI-EYS|2|fusion;nc|ENSG00000188107|Q5T1H1|EYS 16.942295170755138 0.21397866736869717 2 DN{M(Oxidation (M))|F}C{I|L}PT{M(Oxidation (M))|F} 8 -1 44.462 0 0 3.9712 0 0 164.21350752533436 0 164.21350752533436 0 7.706838395248489 0 0 0 0.3054621874040891 0 0.9916440611282625 0 DN{M(Oxidation (M))|F}C{I|L}PT{M(Oxidation (M))|F} 3.9712 - 1685 + NaN NaN 202335.6 NaN 15607 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19531 80.752 NaN 253590 35 0 18861 0.261 -1 0 73 512.2815524109606 1022.5485518887211 2 512.2824096679688 MULTI HCD FTMS 0 0 0 19525 134856.375 0.5051860719366786 -6 0.183807373046875 6 NaN NaN 2 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}N 4 -1 6.6824 0 0 0.65351 0 0 559.3031483380875 0 559.3031483380875 0 3.1875876262441247 0 0 0 0 0 0 0 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}N 0.65351 - 145 NaN NaN 121248.7 NaN 15608 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19532 80.755 NaN 207970 35 0 26878 0.261 + 19425 NPLQDEWVL 9 47 557.2818568188387 1112.5491607044773 2 557.2684326171875 MULTI HCD FTMS 0 0 0 19525 30387.67578125 0.43523193063900484 -2 0.0657196044921875 7 Unmodified _NPLQDEWVL_ ENSG00000213930|ENST00000378842|GALT;ENST00000473529.5_1_9:34646701-34647602:+|nuORF;ENST00000485531.1_1_9:34646906-34647264:+|nuORF;ENST00000487381.5_1_9:34646701-34647264:+|nuORF;ENST00000489643.6_1_9:34646701-34648507:+|nuORF;ENST00000554139.5_1_9:34646701-34647703:+|nuORF;ENST00000554944.5_1_9:34646701-34647660:+|nuORF;ENST00000555214.5_1_9:34646701-34648116:+|nuORF;ENST00000556157.1_1_9:34647054-34647489:+|nuORF;ENST00000556494.5_1_9:34646906-34647602:+|nuORF;ENST00000557541.5_1_9:34646906-34647860:+|nuORF;ENST00000557706.5_1_9:34647054-34647264:+|nuORF 9.38312468134398 0.279288223203164 2 WV{I|L} 3 6 32.435 0 0 2.9154 0 0 696.3086434830282 0 696.3086434830282 0 13.226825097560422 0 0 0 0.7742275032520141 0 0 0 + WV{I|L} 2.9154 + + 56 NaN NaN 122776.1 NaN 15609 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19533 80.758 NaN 138440 35 0 10624 0.261 -1 YIMGGCQIHF 10 54 621.273780019913 NaN 0 621.284912109375 PEAK HCD FTMS 0 0 0 19525 14030.1435546875 0.6546175730381271 -1 0.029541015625 8 Carbamidomethyl (C),Oxidation (M) _YIM(Oxidation (M))GGC(Carbamidomethyl (C))QIHF_ ENSG00000178773|ENST00000319518|CPNE7;ENST00000532500.1_1_16:89651241-89653999:+|nuORF;nc|ENSG00000178773|Q9UBL6|CPNE7 10.823927491677226 0.33092050725491123 2 YDA{I|L}W 5 -1 18.928 0 0 1.5258 0 0 290.1050414757528 299.1146334283813 589.2196749041341 0 0 0 0 0 0 0 0 0 YDA{I|L}W 1.5258 - 118 + NaN NaN 116355.2 NaN 15610 3921 19525 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19535 80.763 NaN 452660 35 0 68418 0.327 + 11087 IYGYTFYSI 9 63 563.7753001015581 1125.536047269916 2 563.7584838867188 MULTI HCD FTMS 0 0 0 19534 22930.1484375 0.09970378888522466 10 -0.2822113037109375 1 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 26.88365393820708 0.12808753336095696 2 C[TP]TA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 9 8 41.621 0 0 3.6979 0 0 62.100843951351926 0 62.100843951351926 0 12.662574822053543 0 0 0 0 0 0.805462187404089 0 C[TP]TA{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 3.6979 - 234 + NaN NaN 157339.1 NaN 15611 3922 19534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19536 80.768 NaN 297700 35 0 14906 0.261 -1 0 89 531.8171257624691 1061.6196985917381 2 531.8173828125 MULTI HCD FTMS 0 0 0 19534 232160.96875 0.597549285352337 -5 0.14765167236328125 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.2023 0 0 896.5413732516976 0 896.5413732516976 0 3.723141081199902 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2023 - 160 + NaN NaN 135416.3 NaN 15612 3922 19534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19537 80.771 NaN 339850 35 0 31805 0.261 + 29143 TYIKFINLF 9 70 579.831606378513 1157.648659823826 2 579.8316040039062 MULTI HCD FTMS 0 0 0 19534 104280.6875 0.13360598122411446 14 -0.396484375 3 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 57.24910588100465 0.021429789259086996 2 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 87.819 0 0 7.586 7.586 88.433 0 0 0 2.6584674471609873 2.6584674471609873 2.6584674471609873 4.0359843160042175 0 2.110924374808178 2 0.28872548999643577 0 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N;[YT]K{I|L}{M(Oxidation (M))|F}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N;[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[Y{I|L}]KT{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 7.586;7.2373;6.7906;6.4419;5.4434;5.0948;5.0143;4.9864;4.6378;4.3675 +;-;-;-;-;-;-;-;-;- + 388 NaN NaN 144981.4 NaN 15613 3922 19534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19538 80.775 NaN 272090 35 0 18713 0.261 + 7637 FYINSGTLQF 10 71 595.298106010358 1188.5816590875158 2 595.2981567382812 MULTI HCD FTMS 0 0 0 19534 77247.6796875 0.11888092323235783 7 -0.2036895751953125 4 Unmodified _FYINSGTLQF_ ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1 91.08480475639789 0.0009191514194420671 2 [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 66.336 0 0 5.5811 5.5811 87.085 0 0 0 5.764837301042718 59.34623773781176 5.764837301042718 9.164539485499255 0 2.242992819099939 0 0.805462187404089 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGSGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NSGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]SGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[NV]|[RG]}TGT{I|L}Q{M(Oxidation (M))|F};[RH][RD]SM{I|L}Q{M(Oxidation (M))|F};[YV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}SGT{I|L}Q{M(Oxidation (M))|F};[RH]{I|L}[RD]{[MS]|[{M(Oxidation (M))|F}A]}Q{M(Oxidation (M))|F};[RH]{I|L}[YR]{[MG]|[TS]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5.5811;4.8101;4.8101;3.688;2.9577;2.427;2.1186;0.69129;0.40612 +;-;-;-;-;-;-;-;- + 501 NaN NaN 124746.4 NaN 15614 3922 19534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19539 80.778 NaN 150300 35 0 13975 0.261 + 35637 YYIFIPSKF 9 44 589.3184601170282 1176.6223673008562 2 589.3184204101562 MULTI HCD FTMS 0 0 0 19534 29387.79296875 0.4353668498578035 -11 0.3147125244140625 5 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19398022840297344 2 YY{I|L} 3 6 37.447 0 0 3.1826 0 0 0 734.3882772645926 734.3882772645926 12.230749808046326 0 0 0 0 0.8494850021680094 2 0 0 + YY{I|L} 3.1826 + + 25 + NaN NaN 107436.9 NaN 15615 3922 19534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19541 80.783 NaN 2078300 35 0 182050 0.327 + 15362 LPDEEIFQQL 10 102 616.3140333234762 1230.6135137137524 2 616.3141479492188 MULTI HCD FTMS 0 0 0 19540 764454.75 0.6021397113772349 -2 0.04898834228515625 1 Unmodified _LPDEEIFQQL_ ENSG00000169019|ENST00000381571|COMMD8 87.25819977447905 0.0012128544035916314 2 [VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L} 10 2 + 66.361 0 0 5.3925 5.3925 83.971 0 0 0 2.456903350432924 9.300674837201782 2.456903350432924 2.456903350432924 0 2.4247425010840047 0 1.0387254899964358 0 [VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}QQ{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG][AG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[YC]|[HE]}VVTM{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Q{[YC]|[HE]}V{I|L}SM{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTM{I|L} 5.3925;5.1929;4.6478;4.6478;4.4482;4.4482;3.906;3.5515;3.4084;3.2275 -;-;-;-;-;-;-;-;-;- 4971 NaN NaN 393830.2 NaN 15616 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19542 80.787 NaN 877230 35 0 175130 0.261 + -1 MPQPHTTLLS 10 100 570.7899250643478 1139.5652971954955 2 570.807861328125 MULTI HCD FTMS 0 0 0 19540 183729.4375 0.6714754869741447 4 -0.118408203125 2 Oxidation (M) _M(Oxidation (M))PQPHTTLLS_ REV__ENSG00000104299|ENST00000521022|INTS9;REV__ENST00000520983.5_1_8:28651295-28747426:-|nuORF;REV__nc|ENSG00000104299|Q9NV88-2|INTS9;REV__nc|ENSG00000104299|Q9NV88-3|INTS9 17.11289562659939 0.35104376501799556 2 [YV]AG[KG][DG]VK{M(Oxidation (M))|F} 11 -1 + 50.666 0 0 4.4461 4.4461 83.326 0 0 0 5.210766831459246 18.98381066942857 5.210766831459246 4.2216751192405155 0 0.5 1.6989700043360187 0.6237125054200234 0 [YV]AG[KG][DG]VK{M(Oxidation (M))|F};[YV]AGV[DG][KG]K{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{[RE]|[WV]}{M(Oxidation (M))|F}VK{M(Oxidation (M))|F};[YV]Q[KG][DG]VK{M(Oxidation (M))|F};[YV]AG[KG][VG]DK{M(Oxidation (M))|F};[YV]QV[DG][KG]K{M(Oxidation (M))|F};[YV]AG[RD][{I|L}V]T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}VK{M(Oxidation (M))|F};[YV]Q[KG][VG]DK{M(Oxidation (M))|F};[YN]{I|L}[KG][DG]VK{M(Oxidation (M))|F} 4.4461;4.0756;3.4978;3.4303;3.2256;3.0598;2.3228;2.2946;2.2098;2.1155 -;-;-;-;-;-;-;-;-;- 2145 NaN NaN 229180.5 NaN 15617 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19543 80.791 NaN 328210 35 0 15146 0.261 -1 YSEALCWGL 9 83 549.750174866826 NaN 0 549.7371826171875 PEAK HCD FTMS 0 0 0 19540 7795.39794921875 0.31551885214753556 -3 0.07852935791015625 3 Carbamidomethyl (C) _YSEALC(Carbamidomethyl (C))WGL_ ENST00000377897.8_1_11:62574818-62575010:-|nuORF 12.531546534597751 0.23452071659215576 2 {I|L}E 2 -1 7.703 0 0 0.70188 0 0 534.2258003178332 318.11237512760005 852.3381754454333 0 0 0 0 0 0 0 0.2614393726401688 0 {I|L}E 0.70188 - 125 + NaN NaN 145467.5 NaN 15618 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19544 80.794 NaN 173510 35 0 29354 0.261 + 19926 NYFPFQWKL 9 56 621.8173968209593 1241.6202407087185 2 622.3165283203125 MULTI HCD FTMS 0 0 0 19540 63105.20703125 0.1909586231196142 28 -0.7797012329101562 4 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 15.847184025352803 0.2234401846867398 2 [YN]{M(Oxidation (M))|F} 3 6 35.986 0 0 2.8983 0 0 0 814.4239265820185 814.4239265820185 15.528871982441359 0 0 0 0 0.7302046884880937 1.6989700043360187 0 0.2742275032520141 + [YN]{M(Oxidation (M))|F} 2.8983 + + 91 NaN NaN 120149.4 NaN 15619 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19545 80.797 NaN 245640 35 0 44550 0.261 + 19426 NPLQDEWVL 9 54 557.2818568188387 1112.5491607044773 2 557.2824096679688 MULTI HCD FTMS 0 0 0 19540 69819.5 1 0 0 5 Unmodified _NPLQDEWVL_ ENSG00000213930|ENST00000378842|GALT;ENST00000473529.5_1_9:34646701-34647602:+|nuORF;ENST00000485531.1_1_9:34646906-34647264:+|nuORF;ENST00000487381.5_1_9:34646701-34647264:+|nuORF;ENST00000489643.6_1_9:34646701-34648507:+|nuORF;ENST00000554139.5_1_9:34646701-34647703:+|nuORF;ENST00000554944.5_1_9:34646701-34647660:+|nuORF;ENST00000555214.5_1_9:34646701-34648116:+|nuORF;ENST00000556157.1_1_9:34647054-34647489:+|nuORF;ENST00000556494.5_1_9:34646906-34647602:+|nuORF;ENST00000557541.5_1_9:34646906-34647860:+|nuORF;ENST00000557706.5_1_9:34647054-34647264:+|nuORF 9.38312468134398 0.279288223203164 2 WV{I|L} 3 6 33.188 0 0 2.983 0 0 696.3071766584 0 696.3071766584 0 22.385606273598313 0 0 0 0.8494850021680094 0 0 0 + WV{I|L} 2.983 + + 52 NaN NaN 121750.3 NaN 15620 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19546 80.801 NaN 216140 35 0 21129 0.261 + 34623 YPPVQVLF 8 56 481.77099022523265 961.5274275172653 2 482.27276611328125 MULTI HCD FTMS 0 0 0 19540 27935.12890625 0.39604621285768604 2 -0.06235504150390625 6 Unmodified _YPPVQVLF_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 19.438996006549623 0.45076845602799126 2 V{I|L}{M(Oxidation (M))|F} 3 5 38.94 0 0 4.0498 0 0 584.2957208295685 0 584.2957208295685 0 19.387568628841265 0 0 0 1.4247425010840047 0 0 0 + V{I|L}{M(Oxidation (M))|F} 4.0498 + + 44 + NaN NaN 117534.8 NaN 15621 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19547 80.804 NaN 166180 35 0 29395 0.261 + 25152 SAIIFETPL 9 50 495.7786128222188 989.5426727112376 2 496.281005859375 MULTI HCD FTMS 0 0 0 19540 52735.4765625 1 0 0 7 Unmodified _SAIIFETPL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 29.081581746732265 0.1154664336125038 2 {I|L}{M(Oxidation (M))|F}ET[{I|L}P] 6 3 46.911 0 0 4.7407 0 0 271.1522389142594 0 271.1522389142594 0 46.91122510072759 0 0 0 2 0 0 0 + {I|L}{M(Oxidation (M))|F}ET[{I|L}P] 4.7407 + + 49 NaN NaN 114656.8 NaN 15622 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19548 80.807 NaN 85231 35 0 9630.2 0.262 + 21168 PPRPGRAG 8 50 404.2329439970461 806.4513350608922 2 404.2334289550781 MULTI HCD FTMS 0 0 0 19540 18463.365234375 0.0086874650562065 21 -0.6032638549804688 8 Unmodified _PPRPGRAG_ ENST00000468377.1_1_3:128208233-128208692:+|nuORF 2.302733041254933 0.5385759549224092 2 M 1 8 11.594 0 0 1.4376 0 0 657.3999720011251 0 657.3999720011251 0 7.156818820794937 0 0 0 0 0 0 0 M 1.4376 - 15 + NaN NaN 106452.6 NaN 15623 3923 19540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19550 80.812 NaN 2610500 35 0 302060 0.327 + 15163 LMSLIINTF 9 99 534.2939527474999 1066.5733525617998 2 534.2943115234375 MULTI HCD FTMS 0 0 0 19549 1562695.875 0.8196485787436034 -3 0.07851409912109375 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 174.72732175369546 1.2540765405420886E-09 2 TT{[HG]|PP}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 4 89.426 0 0 8.3844 0 0 64.0182661398289 0 64.0182661398289 0 19.68765315847925 0 0 0 1.3807196863200843 0 2.611407999752478 1.329689690656103 TT{[HG]|PP}{I|L}{I|L}NT{M(Oxidation (M))|F} 8.3844 - 3665 + NaN NaN 492414.6 NaN 15624 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19551 80.817 NaN 1535100 35 0 374100 0.261 + 21551 PYLLISTQI 9 96 524.3075637278995 1046.600574522599 2 524.307861328125 MULTI HCD FTMS 0 0 0 19549 729559.375 0.6944188308775641 1 -0.03282928466796875 2 Unmodified _PYLLISTQI_ ENSG00000137880|ENST00000260447|GCHFR;nc|ENSG00000137880|P30047-2|GCHFR 66.45667989310934 0.010234776021261575 2 TS{I|L}{I|L}NQ{I|L} 7 5 66.675 0 0 6.3706 0 0 259.152635642775 0 259.152635642775 0 44.89654813773832 0 0 0 1.8494850021680094 0 1.3723637474483468 0 TS{I|L}{I|L}NQ{I|L} 6.3706 - 472 NaN NaN 324320.3 NaN 15625 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19552 80.82 NaN 414330 35 0 217370 0.261 -1 MKILIIFAA 9 47 518.3172578297786 1034.619962726357 2 518.3172607421875 MULTI HCD FTMS 0 0 0 19549 104388.09375 0.245701516722341 -3 0.07851409912109375 3 Oxidation (M) _M(Oxidation (M))KILIIFAA_ ENST00000287598.10_1_15:40504760-40504829:+|nuORF 2.0597508629832335 0.3354026079994024 2 A 1 -1 3.9794 0 0 0.38462 0 0 78.08009464361551 882.4986666315061 960.5787612751217 0 0 0 0 0 0 0 0 0 A 0.38462 + + 3 + NaN NaN 146449.9 NaN 15626 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19553 80.824 NaN 303080 35 0 150020 0.262 + 805 AVCMNYDQAKI 11 44 419.1971830762055 1254.5697198288165 3 419.18341064453125 MULTI HCD FTMS 0 0 0 19549 17113.650390625 0.640435097629893 -3 0.07851409912109375 4 Unmodified _AVCMNYDQAKI_ REV__ENSG00000153294|ENST00000283303|ADGRF4 1.1097533296519684 0.4140536653900533 2 S 1 -1 5.4846 0 0 0.43717 0 0 1012.4426731752993 152.07155786685783 1164.5142310421572 0 0 0 0 0 0 0 0 0 S 0.43717 - 3 + NaN NaN 134827.2 NaN 15627 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19554 80.827 NaN 571070 35 0 52958 0.261 -1 MAPLGYFLL 9 77 520.7784959474044 NaN 0 520.7950439453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))APLGYFLL_ ENSG00000154342|ENST00000284523|WNT3A;nc|ENSG00000154342|P56704-2|WNT3A 5.230669730166228 0.26989974671959066 2 VVAV 4 -1 10.522 0 0 1.0121 0 0 166.03627455533098 502.2438143365844 668.2800888919154 0 0 0 0 0 0 0 0 0 VVAV 1.0121 - 174 + NaN NaN 175501 NaN 15628 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19555 80.83 NaN 172270 35 0 57013 0.261 + 14873 LKLFLYWP 8 42 540.3177675816249 NaN 0 540.330322265625 PEAK HCD FTMS 0 0 0 19549 11038.7763671875 1 0 0 6 Unmodified _LKLFLYWP_ ENST00000252595.11_1_19:17615396-17615555:+|nuORF 0.7936320650641473 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.64802 0 0 132.18205191678743 830.3213914333705 962.503443350158 0 0 0 0 0 0 0 0 0 + {I|L} 0.64802 + + 3 + NaN NaN 128103.6 NaN 15629 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19556 80.834 NaN 718960 35 0 137950 0.261 + 28619 TQRGALFLLF 10 74 583.3398656954387 1164.6651784576773 2 583.3402709960938 MULTI HCD FTMS 0 0 0 19549 180397.84375 0.3288773212767848 -4 0.10805511474609375 7 Unmodified _TQRGALFLLF_ ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF 53.40400417844725 0.06540992187319636 2 Q{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6 4 58.51 0 0 5.0237 0 0 385.2069264142594 0 385.2069264142594 0 27.874992588081597 0 0 0 1.9247425010840047 0 0 0.28872548999643577 Q{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.0237 - 597 NaN NaN 216684.4 NaN 15630 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19557 80.837 NaN 229560 35 0 46372 0.261 + 4881 FAFEGIGDEDL 11 38 606.7743788872351 1211.5342048412701 2 606.7738647460938 MULTI HCD FTMS 0 0 0 19549 47584.51171875 0.24301251262677545 5 -0.1546478271484375 8 Unmodified _FAFEGIGDEDL_ ENSG00000115234|ENST00000233575|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17 20.41453444215458 0.279209903849948 2 EE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 5 9 26.823 0 0 2.2139 0 0 588.2896595685562 0 588.2896595685562 0 26.822581265925436 0 0 0 1 0 0 0 EE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.2139 - 14 NaN NaN 130411.6 NaN 15631 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19558 80.84 NaN 315820 35 0 34631 0.261 -1 LPCPQTFFFP 10 68 627.3046030524812 1252.5946531717623 2 627.3052368164062 MULTI HCD FTMS 0 0 0 19549 45427.9921875 0.3392099444316624 -1 0.0295257568359375 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))PQTFFFP_ ENST00000493504.1_1_19:59094431-59094902:+|nuORF 15.248480904072842 0.3684828712757339 2 {I|L}PDEE{I|L}{M(Oxidation (M))|F}Q 8 -1 75.98 0 0 6.0658 0 0 0 278.1111239068969 278.1111239068969 52.93305028184122 0 0 0 0 1.4361818737241734 0 0.3494850021680094 0.4247425010840047 {I|L}PDEE{I|L}{M(Oxidation (M))|F}Q 6.0658 - 462 + NaN NaN 140988.2 NaN 15632 3924 19549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19560 80.845 NaN 506930 35 0 53643 0.327 + 6279 FPFHFVEVL 9 91 567.8017538236599 1133.5889547141196 2 567.8028564453125 MULTI HCD FTMS 0 0 0 19559 297769.625 1 0 0 1 Unmodified _FPFHFVEVL_ ENSG00000141562|ENST00000309794|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-2|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;nc|ENSG00000141562|Q9UHQ1-4|NARF 28.486842064014134 0.11819662193267319 2 EVEV{I|L} 5 5 43.025 0 0 3.7955 0 0 546.2899647443375 0 546.2899647443375 0 25.06625672816984 0 0 0 0.5 0 0.7302046884880937 0 EVEV{I|L} 3.7955 - 819 NaN NaN 171687.4 NaN 15633 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19561 80.85 NaN 419610 35 0 38918 0.261 + 21510 PYGYLNDVF 9 78 544.2594309954319 1086.5043090576637 2 545.2849731445312 MULTI HCD FTMS 0 0 0 19559 37316.97265625 0.6150253043051118 -2 0.06235504150390625 2 Unmodified _PYGYLNDVF_ REV__ENSG00000146938|ENST00000381095|NLGN4X;REV__ENSG00000165246|ENST00000684976|NLGN4Y;REV__ENSG00000169760|ENST00000695368|NLGN1;REV__ENSG00000169992|ENST00000302926|NLGN2;REV__ENSG00000196338|ENST00000358741|NLGN3;REV__nc|ENSG00000146938|Q8N0W4-2|NLGN4X;REV__nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y;REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1;REV__nc|ENSG00000169760|Q8N2Q7|NLGN1;REV__nc|ENSG00000196338|Q9NZ94-2|NLGN3;REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 25.399314129420986 0.14091189997036632 2 EES{I|L}{I|L}{I|L}N 7 -1 40.98 0 0 3.7717 0 0 0 285.0859774225219 285.0859774225219 -2.100745231580781 0 -2.100745231580781 0 0 0 0 0.3807196863200844 0.3252574989159953 EES{I|L}{I|L}{I|L}N 3.7717 - 1626 + NaN NaN 159303.7 NaN 15634 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19562 80.853 NaN 100190 35 0 10666 0.261 -1 0 54 477.26541475641255 476.25813828981256 1 479.2778625488281 MULTI HCD FTMS 0 0 0 19559 4807.091796875 0.2961511781463109 -1 0.03282928466796875 3 NaN NaN 2 V 1 -1 3.0989 0 0 0.65069 0 0 106.0381503521157 268.12372766666255 374.1618780187782 0 0 0 0 0 0 0 0 0 V 0.65069 - 5 + NaN NaN 103701.7 NaN 15635 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19563 80.856 NaN 225070 35 0 56375 0.261 + 17319 LYPQFMFHL 9 54 598.3021471797576 1194.5897414263152 2 598.3020629882812 MULTI HCD FTMS 0 0 0 19559 57831.55078125 0.019267307493050854 47 -1.3118209838867188 4 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 24.67388899826682 0.14717941214954053 2 [Y{I|L}][QP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[H{I|L}] 9 0 + 24.893 0 0 2.0838 2.0838 87.692 0 0 0 13.92422450001931 3.6527926935124135 3.6527926935124135 24.893324630099873 0 0.75 2 0 0 + + [Y{I|L}][QP]{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[H{I|L}] 2.0838 + + 28 + NaN NaN 129127 NaN 15636 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19564 80.86 NaN 185010 35 0 16749 0.261 + 26641 SWTLTNADF 9 62 527.74635546732 1053.4781580014399 2 527.7468872070312 MULTI HCD FTMS 0 0 0 19559 81142.921875 0.8304320339084281 10 -0.2784423828125 5 Unmodified _SWTLTNADF_ REV__ENSG00000136933|ENST00000373538|RABEPK;REV__nc|ENSG00000136933|Q7Z6M1-2|RABEPK 6.2057823575117 0.30397260197431997 2 D{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.8476 0 0 773.3730077102274 0 773.3730077102274 0 9.54242509439325 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 1.8476 + + 102 + NaN NaN 127183.1 NaN 15637 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19565 80.863 NaN 125700 35 0 16971 0.261 + 24272 RYFLPPYTF 9 38 602.3133766428713 1202.6122003525425 2 602.3128051757812 MULTI HCD FTMS 0 0 0 19559 37293.85546875 0.4916652187083154 18 -0.5113983154296875 6 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.20357593197100715 2 T{M(Oxidation (M))|F} 2 7 25.969 0 0 2.1594 0 0 936.4818606301495 0 936.4818606301495 0 14.006375246153908 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1594 + + 12 NaN NaN 110595.2 NaN 15638 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19566 80.866 NaN 173320 35 0 20340 0.263 + 34624 YPPVQVLF 8 49 481.77099022523265 961.5274275172653 2 482.26104736328125 MULTI HCD FTMS 0 0 0 19559 9505.2783203125 0.13475969606411176 4 -0.12181854248046875 7 Unmodified _YPPVQVLF_ ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6 14.581692164780916 0.48650662947107914 2 {I|L}{M(Oxidation (M))|F} 2 6 27.717 0 0 2.8826 0 0 683.3646107404312 0 683.3646107404312 0 11.17423111099761 0 0 0 0.8252574989159953 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.8826 + + 40 NaN NaN 136256.4 NaN 15639 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19567 80.87 NaN 118780 35 0 27361 0.261 + -1 RMTGWAGGWHV 11 33 637.2978914970693 1272.5812300609384 2 637.2979125976562 MULTI HCD FTMS 0 0 0 19559 26530.798828125 0.6477633757972718 1 -0.02951812744140625 8 Oxidation (M) _RM(Oxidation (M))TGWAGGWHV_ REV__ENST00000604404.5_1_19:35614541-35614637:+|nuORF 1.4819007175156935 0.4124215533673021 2 G 1 -1 3.0989 0 0 0.24352 0 0 718.3297174650385 494.20591150455317 1212.5356289695917 0 0 0 0 0 0 0 0 0 G 0.24352 + + 1 + NaN NaN 108367.4 NaN 15640 3925 19559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19569 80.875 NaN 1667700 35 0 79229 0.327 + 14844 LKEQKERA 8 114 501.2906072263501 1000.5666615195003 2 501.2908020019531 MULTI HCD FTMS 0 0 0 19568 1623464.5 0.9183879097117544 -3 0.0918731689453125 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 6.723162845929126 0.5320176132289695 2 Q 1 7 10.713 0 0 1.0707 0 0 458.27330220450636 411.22333955987466 869.496641764381 0 0 0 0 0 0.7614393726401688 0 0 0 + Q 1.0707 + + 197 + NaN NaN 349301.6 NaN 15641 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19570 80.879 NaN 1362000 35 0 60366 0.261 + 12544 KSKLTGTRQ 9 110 509.80379454164563 1017.5930361500913 2 509.8039855957031 MULTI HCD FTMS 0 0 0 19568 584507.6875 0.4619749068726755 -1 0.02951812744140625 2 Unmodified _KSKLTGTRQ_ ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ;POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 2.9952420565917617 0.3283108881486655 2 A 1 9 5.5065 0 0 0.54113 0 0 105.0797383806018 838.4641726333265 943.5439110139283 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.54113 - 1020 + NaN NaN 294119.4 NaN 15642 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19571 80.883 NaN 831120 35 0 178760 0.261 + 11051 IYFPYVLKI 9 78 578.34422825293 1154.6739035726598 2 578.344482421875 MULTI HCD FTMS 0 0 0 19568 267393.25 0.4759129189969846 -1 0.02951812744140625 3 Unmodified _IYFPYVLKI_ ENSG00000188921|ENST00000495827|HACD4 74.42276476219924 0.007657080072768255 2 {I|L}Y{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}K{I|L} 9 0 + 78.884 0 0 6.8317 6.8317 93.838 0 0 0 59.371214657440845 15.118705200516018 15.118705200516018 33.13608784304506 0 2.774227503252014 1.6989700043360187 0.7742275032520141 0.6109243748081782 + + {I|L}Y{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}K{I|L};[Y{I|L}][VP][Y{M(Oxidation (M))|F}]{I|L}K{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}K{I|L};[Y{I|L}][VP]K{M(Oxidation (M))|F}{I|L}Y{I|L};{M(Oxidation (M))|F}[Y{I|L}]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}K{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}E]V{I|L}K{I|L} 6.8317;3.962;3.4957;3.4914;2.6329;2.3849 +;-;-;-;-;- + 199 + NaN NaN 212081.8 NaN 15643 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19572 80.886 NaN 323750 35 0 30100 0.261 + 20684 PFLPKPLFF 9 79 553.3257789608928 1104.6370049885854 2 553.3253173828125 MULTI HCD FTMS 0 0 0 19568 38145.3984375 0.29345107811445037 3 -0.0923004150390625 4 Unmodified _PFLPKPLFF_ ENSG00000160208|ENST00000340648|RRP1B;nc|ENSG00000160208|Q14684-2|RRP1B 50.855029805455786 0.030374663808198754 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 6 36.695 0 0 3.3219 0 0 0 744.409349309151 744.409349309151 1.0621790009509056 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3.3219 + + 702 NaN NaN 136629.4 NaN 15644 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19573 80.889 NaN 106250 35 0 17096 0.262 -1 0 55 477.26541475641255 476.25813828981256 1 479.27777099609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 V 1 -1 6.1536 0 0 1.2921 0 0 106.0387607036782 268.12363611392817 374.16239681760635 0 0 0 0 0 0.3054621874040891 0 0 0 V 1.2921 - 5 + NaN NaN 100160.5 NaN 15645 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19574 80.893 NaN 204690 35 0 21547 0.261 + 27440 SYVPQTNTW 9 63 548.2600773046312 1094.5056016760623 2 548.26025390625 MULTI HCD FTMS 0 0 0 19568 31719.080078125 0.5070363676792157 -2 0.062347412109375 6 Unmodified _SYVPQTNTW_ ENSG00000119771|ENST00000486442|KLHL29;ENST00000471654.1_1_2:23914526-23929531:+|nuORF 17.11289562659939 0.2125047172822487 2 VW 2 7 28.271 0 0 2.583 0 0 791.3453846662125 0 791.3453846662125 0 9.168409577503876 0 0 0 0.8807196863200843 0 0 0 VW 2.583 - 125 NaN NaN 113763.1 NaN 15646 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19575 80.896 NaN 213640 35 0 45927 0.261 -1 LYSIMQQSVQ 10 53 606.8007917785204 1211.5870306238407 2 606.8025512695312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _LYSIM(Oxidation (M))QQSVQ_ ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13 6.723162845929126 0.4397169348982109 2 EE 2 -1 7.0783 0 0 0.58422 0 0 365.22699752012824 585.2660006158811 950.4929981360094 0 0 0 0 0 0 0 0 0 EE 0.58422 - 20 + NaN NaN 135068.4 NaN 15647 3926 19568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19577 80.901 NaN 558890 35 0 74578 0.327 + 13586 KYPENFFLL 9 73 585.8131605635726 1169.6117681939452 2 585.8135986328125 MULTI HCD FTMS 0 0 0 19576 358585.5 0.0018227888646500242 202 -4.859611511230469 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 66.973 0 0 5.7261 5.7261 88.135 0 0 0 3.217196696094433 41.055293429214714 3.217196696094433 9.208187539523749 0 2.2614393726401687 0 0 0.8494850021680094 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][NP]E{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[YK][NP]E{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V]QQE{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]YK{I|L} 5.7261;4.9388;4.8421;4.2592;3.1245;2.6312;2.2405;2.0483;1.6577;0.82678 +;-;-;-;-;-;-;-;-;- + 406 NaN NaN 184577.2 NaN 15648 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19578 80.906 NaN 652400 35 0 93312 0.261 -1 0 75 566.2980512400009 1130.5815495468016 2 566.2981567382812 MULTI HCD FTMS 0 0 0 19576 271403.34375 0.7597056386857275 21 -0.5963363647460938 2 NaN NaN 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 54.997 0 0 4.8645 0 0 291.15767104316564 0 291.15767104316564 0 9.768053861451179 0 0 0 2.7302046884880937 0 0.3494850021680094 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.8645 - 1061 NaN NaN 205935.1 NaN 15649 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19579 80.909 NaN 447310 35 0 47896 0.261 + 11088 IYGYTFYSI 9 65 563.7777082664472 NaN 0 563.7582397460938 PEAK HCD FTMS 0 0 0 19576 14924.599609375 1 0 0 3 Unmodified _IYGYTFYSI_ ENSG00000183978|ENST00000328434|COA3 32.30548876998284 0.10480114246275442 2 CYD{M(Oxidation (M))|F} 4 7 24.68 0 0 2.1928 0 0 62.10815010258586 532.2411775760413 594.3493276786272 0 0 0 0 0 0 0 0.4247425010840047 0 CYD{M(Oxidation (M))|F} 2.1928 - 134 + NaN NaN 166349.5 NaN 15650 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19580 80.913 NaN 597980 35 0 124450 0.261 + 21660 PYSLLDIMV 9 77 525.7806633528662 1049.5467737725323 2 526.2822265625 MULTI HCD FTMS 0 0 0 19576 115868.4140625 0.5802562458948998 -3 0.0888824462890625 4 Unmodified _PYSLLDIMV_ ENST00000446265.3_1:149647111-149647681:+|nuORF 28.486842064014134 0.11819662193267319 2 VQSPDV{M(Oxidation (M))|F} 7 6 51.701 0 0 4.926 0 0 259.1519947736344 0 259.1519947736344 0 32.7726570743409 0 0 0 1.274227503252014 0 0.3252574989159953 0 VQSPDV{M(Oxidation (M))|F} 4.926 - 972 NaN NaN 176846.4 NaN 15651 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19581 80.916 NaN 230250 35 0 34805 0.261 + 19927 NYFPFQWKL 9 62 621.8173968209593 1241.6202407087185 2 622.3165283203125 MULTI HCD FTMS 0 0 0 19576 66857.0078125 0.20231170704265414 32 -0.8819580078125 5 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 26.88365393820708 0.12808753336095696 2 [YN]{I|L} 3 6 38.244 0 0 3.0802 0 0 0 848.4074375331426 848.4074375331426 27.78659694992122 0 0 0 0 0.3054621874040891 1.6989700043360187 0 0.7742275032520141 [YN]{I|L} 3.0802 - 61 NaN NaN 119208.4 NaN 15652 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19582 80.919 NaN 146220 35 0 7482.2 0.261 -1 SYADQMFLL 9 59 552.2571447137764 NaN 0 552.25634765625 PEAK HCD FTMS 0 0 0 19576 80412.1015625 1 0 0 6 Oxidation (M) _SYADQM(Oxidation (M))FLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 14.838274106304384 0.2220448417561729 2 {M(Oxidation (M))|F} 1 -1 9.0495 0 0 0.82081 0 0 349.1652771211089 603.2786959283811 952.4439730494901 0 0 0 0 0 0.7059771852360797 0 0 0 {M(Oxidation (M))|F} 0.82081 + + 83 + NaN NaN 110873 NaN 15653 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19583 80.923 NaN 70282 35 0 9886.6 0.262 + 29953 VFHRAGLL 8 38 456.77357512800546 911.532597322811 2 456.7734680175781 MULTI HCD FTMS 0 0 0 19576 49920.7421875 0.4147334984732723 6 -0.17003631591796875 7 Unmodified _VFHRAGLL_ CFAP61|p.Y/YNRYHLPMYAWPGIVX1223Y/YNRYHLPMYAWPGIVX|1|0.2|ENSG00000089101|chr20:20360364-20360365|-/TAACCGCTACCACCTGCCCATGTACGCGTGGCCAGGCATCGTT|frameshift_variant;ENSG00000089101|ENST00000245957|CFAP61;nc|ENSG00000089101|Q8NHU2-3|CFAP61;nc|ENSG00000089101|Q8NHU2-4|CFAP61 19.438996006549623 0.45076845602799126 2 Q{I|L}{I|L} 3 6 39.253 0 0 4.3062 0 0 539.2977772443375 0 539.2977772443375 0 22.26280941356464 0 0 0 1.305462187404089 0 0 0 Q{I|L}{I|L} 4.3062 - 18 NaN NaN 98274.6 NaN 15654 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19584 80.926 NaN 469460 35 0 71171 0.261 + 14521 LFDITGQDF 9 61 528.2563495308232 1054.4981461284463 2 528.2570190429688 MULTI HCD FTMS 0 0 0 19576 155486.1875 0.5486560316890238 -6 0.16739654541015625 8 Unmodified _LFDITGQDF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 65.47368725323818 0.010552856507075443 2 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F} 9 2 + 76.916 0 0 7.2941 7.2941 90.821 0 0 0 0.7956716387270291 72.47933455448525 0.7956716387270291 9.208187539523749 0 2.8494850021680094 0 0.3807196863200844 0 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TG[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}EGQD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}T{[WN]|[YH]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}EG[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{NN|[MP]|[D{I|L}]|[EV]}QD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))N]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F} 7.2941;6.4209;4.611;4.5956;3.7378;2.1049;0.68126 -;-;-;-;-;-;- 251 NaN NaN 154195.4 NaN 15655 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19585 80.929 NaN 440090 35 0 43948 0.261 + -1 TRLGLCGC 8 70 468.7241690632123 935.4337851932246 2 468.7233581542969 MULTI HCD FTMS 0 0 0 19576 140695.296875 0.2643315289880233 -6 0.16739654541015625 9 2 Carbamidomethyl (C) _TRLGLC(Carbamidomethyl (C))GC(Carbamidomethyl (C))_ REV__ENST00000493902.5_1_16:31044585-31047064:+|nuORF 2.577480529830294 0.5381683276125971 2 T{I|L} 2 -1 18.583 0 0 1.9866 0 0 0 718.2728962485891 718.2728962485891 8.221988848117423 0 0 0 0 0 0 0 0 T{I|L} 1.9866 - 23 + NaN NaN 152170.1 NaN 15656 3927 19576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19587 80.934 NaN 1784700 35 0 197090 0.326 + 15363 LPDEEIFQQL 10 95 616.3140333234762 1230.6135137137524 2 616.3140869140625 MULTI HCD FTMS 0 0 0 19586 665060.125 0.5238493340724324 3 -0.078582763671875 1 Unmodified _LPDEEIFQQL_ ENSG00000169019|ENST00000381571|COMMD8 107.09958533191995 5.475541806694616E-05 2 [VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L} 10 2 + 77.191 0 0 6.2725 6.2725 86.218 0 0 0 4.195925227640984 34.2959876758067 4.195925227640984 4.395103610594049 0 2.504432191740108 0 1.4802046884880937 0 [VP]EEE{I|L}{M(Oxidation (M))|F}QQ{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}QQ{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}[AG]Q{I|L};{[QN]|[E{I|L}]|[KN]}[DP]E{I|L}{M(Oxidation (M))|F}Q[AG]{I|L};[VP]EEE{I|L}{M(Oxidation (M))|F}[AG][AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTM{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{[QG]|[NA]}DRQQ{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[AG]{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTM{I|L} 6.2725;5.9154;5.5278;5.5278;5.1707;5.1707;4.786;3.5569;2.9268;2.8122 -;-;-;-;-;-;-;-;-;- 4524 NaN NaN 356984.5 NaN 15657 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19588 80.939 NaN 536550 35 0 22202 0.261 -1 0 105 531.8171257624691 1061.6196985917381 2 531.8172607421875 MULTI HCD FTMS 0 0 0 19586 188911.453125 0.4862311887200689 1 -0.03287506103515625 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2712 0 0 896.5409612643929 0 896.5409612643929 0 4.005149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2712 - 535 + NaN NaN 182928.2 NaN 15658 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19589 80.942 NaN 390030 35 0 26456 0.261 -1 0 79 512.2815524109606 1022.5485518887211 2 512.281982421875 MULTI HCD FTMS 0 0 0 19586 153686.078125 0.5757241073647594 1 -0.03287506103515625 3 NaN NaN 2 T[KP]N 4 -1 10.406 0 0 1.0177 0 0 564.2745228498062 0 564.2745228498062 0 7.307131330965717 0 0 0 0 0 0.3494850021680094 0 T[KP]N 1.0177 - 118 NaN NaN 148488.3 NaN 15659 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19590 80.945 NaN 704960 35 0 367580 0.261 + 21006 PLNVDLVL 8 38 441.76845900555986 881.5223650779197 2 441.76837158203125 MULTI HCD FTMS 0 0 0 19586 391495.9375 0.08083099199754552 -5 0.15129852294921875 4 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 32.30548876998284 0.3297748069446609 2 [{I|L}V][NP]D{I|L}V{I|L} 8 -1 + 55.891 0 0 6.3402 6.3402 90.119 0 0 0 0.45757490560674796 47.81865655543953 0.45757490560674796 10.268024924119672 0 1.9247425010840047 0 0.4247425010840047 0 [{I|L}V][NP]D{I|L}V{I|L};[{I|L}V]D[NP]{I|L}V{I|L} 6.3402;5.1754 -;- 42 NaN NaN 198753.8 NaN 15660 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19591 80.949 NaN 469860 35 0 69462 0.261 + -1 NIIKKCPTF 9 75 560.8111976600297 1119.6078423868594 2 560.8296508789062 MULTI HCD FTMS 0 0 0 19586 27732.595703125 0.3938291827730948 3 -0.078582763671875 5 Carbamidomethyl (C) _NIIKKC(Carbamidomethyl (C))PTF_ REV__ENST00000252713.8_3_7:99171546-99171660:+|nuORF 20.453626601364224 0.18364154288633264 2 N{I|L}PT{M(Oxidation (M))|F} 5 -1 41.529 0 0 3.7092 0 0 529.3017033261157 0 529.3017033261157 0 24.706225184280797 0 0 0 0.8252574989159953 0 0.8494850021680094 0 N{I|L}PT{M(Oxidation (M))|F} 3.7092 - 646 + NaN NaN 167015.7 NaN 15661 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19592 80.952 NaN 385910 35 0 95296 0.261 + 34328 YPEDFAIDL 9 51 541.755735889454 1081.4969188457078 2 541.755615234375 MULTI HCD FTMS 0 0 0 19586 175062.75 0.36255372851547013 -8 0.229827880859375 6 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 30.636539890814138 0.10832830463492794 2 A{I|L}D{I|L} 4 5 46.938 0 0 4.3401 0 0 651.2517320552757 0 651.2517320552757 0 16.60367041122983 0 0 0 1.5 0 0 0 + A{I|L}D{I|L} 4.3401 + + 64 NaN NaN 157547.7 NaN 15662 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19593 80.955 NaN 216680 35 0 51948 0.263 + 15293 LPAGIVAVL 9 48 426.7813069159882 851.5480608987764 2 426.78118896484375 MULTI HCD FTMS 0 0 0 19586 91403.6484375 0.5196168032335475 -5 0.15129852294921875 7 Unmodified _LPAGIVAVL_ ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD;nc|ENSG00000122882|O95905-3|ECD 36.466142684027034 0.08156716203802528 2 VAV{I|L} 4 5 48.175 0 0 5.6574 0 0 451.279252365314 0 451.279252365314 0 43.11365663899274 0 0 0 1.774227503252014 0 0 0 + VAV{I|L} 5.6574 + + 27 NaN NaN 122689.2 NaN 15663 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19594 80.959 NaN 377730 35 0 37396 0.261 + 20301 NYPHFFLDF 9 70 600.2798568030165 1198.545160672833 2 600.27978515625 MULTI HCD FTMS 0 0 0 19586 83814.84375 0.6755963633679829 -2 0.05942535400390625 8 Unmodified _NYPHFFLDF_ ENSG00000197872|ENST00000381323|CYRIA 45.69961567697781 0.039180348357221985 2 [YN]QQ{M(Oxidation (M))|F}PQK{M(Oxidation (M))|F} 9 5 + 46.589 0 0 3.8872 3.8872 82.026 0 0 0 15.270658834536448 9.623782144084402 9.623782144084402 2.724928274552596 0 0.7742275032520141 2 0 0.6505149978319906 [YN]QQ{M(Oxidation (M))|F}PQK{M(Oxidation (M))|F};[YN]QQM{I|L}QK{M(Oxidation (M))|F};[YN]QQ{M(Oxidation (M))|F}P[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}QQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]QQM{I|L}[AG]K{M(Oxidation (M))|F};[YN][K{I|L}]{M(Oxidation (M))|F}{I|L}Q[C(Carbamidomethyl (C))N];[YN][K{I|L}]{M(Oxidation (M))|F}{I|L}[AG][C(Carbamidomethyl (C))N];[Y{I|L}]P[WQ][KC]D{M(Oxidation (M))|F};[YN]QQ{M(Oxidation (M))|F}[K{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]Q[WP][KC]D{M(Oxidation (M))|F} 3.8872;3.6598;3.1189;2.9719;2.8915;2.8644;2.0962;2.0804;2.0344;1.9995 -;-;-;-;-;-;-;-;-;- 434 + NaN NaN 158949 NaN 15664 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19595 80.962 NaN 96672 35 0 25015 0.263 + 34742 YPVVVGAEI 9 40 473.7659416629596 945.5173303927193 2 473.7657165527344 MULTI HCD FTMS 0 0 0 19586 48215.67578125 0.7064604270511925 1 -0.03287506103515625 9 Unmodified _YPVVVGAEI_ ENST00000395474.7_2_3:49053065-49053377:+|nuORF 12.531546534597751 0.2520865569484384 2 E{I|L} 2 7 25.217 0 0 2.667 0 0 685.3790760724625 0 685.3790760724625 0 24.731975075880328 0 0 0 0.4247425010840047 0 0 0 + E{I|L} 2.667 + + 5 NaN NaN 107282.7 NaN 15665 3928 19586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19597 80.967 NaN 2453200 35 0 284350 0.327 + 15164 LMSLIINTF 9 102 534.2939527474999 1066.5733525617998 2 534.294189453125 MULTI HCD FTMS 0 0 0 19596 1008141.6875 0.5287797290253633 2 -0.04570770263671875 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 174.72732175369546 1.2540765405420886E-09 2 TT{[HG]|PP}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 4 87.868 0 0 8.2384 0 0 64.01470565001951 0 64.01470565001951 0 29.042045833281207 0 0 0 1.3807196863200843 0 2.5673851849885576 1.2803695511246984 TT{[HG]|PP}{I|L}{I|L}NT{M(Oxidation (M))|F} 8.2384 - 3813 + NaN NaN 454580.2 NaN 15666 3929 19596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19598 80.971 NaN 1109100 35 0 266140 0.261 + 21552 PYLLISTQI 9 85 524.3075637278995 1046.600574522599 2 524.307861328125 MULTI HCD FTMS 0 0 0 19596 592488.5 0.563950221979399 6 -0.15662384033203125 2 Unmodified _PYLLISTQI_ ENSG00000137880|ENST00000260447|GCHFR;nc|ENSG00000137880|P30047-2|GCHFR 43.77239144664712 0.04802738721622131 2 TS{I|L}NQ{I|L}{I|L} 7 7 50.49 0 0 4.8241 0 0 259.15281874824376 0 259.15281874824376 0 33.66698922011356 0 0 0 1.5397644799392252 0 0.9386218330464626 0 TS{I|L}NQ{I|L}{I|L} 4.8241 - 379 NaN NaN 254726.7 NaN 15667 3929 19596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19599 80.975 NaN 830800 35 0 58405 0.261 + 17097 LYLEFLQKF 9 90 600.8369655514308 1199.6593781696615 2 600.8367309570312 MULTI HCD FTMS 0 0 0 19596 259037.5625 0.48347584120354964 -4 0.12181854248046875 3 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 114.20165948288297 0.0022564706844261533 2 {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F} 9 0 + 103.71 0 0 8.6448 8.6448 88.723 0 0 0 0.9261285110561204 0.9261285110561204 0.9261285110561204 0.9261285110561204 0 3.1237125054200234 1.6989700043360187 0 1.7856668758921828 + + {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};{I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{I|L}{M(Oxidation (M))|F}QK{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}[AG]{I|L}K{M(Oxidation (M))|F};[Y{I|L}]E{I|L}{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F} 8.6448;8.5676;8.0565;7.8772;7.6063;7.5289;7.3439;7.0952;6.7771;6.5676 +;+;-;-;-;-;-;-;-;- + 2122 + NaN NaN 217010.9 NaN 15668 3929 19596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19600 80.978 NaN 323610 35 0 28534 0.261 + 35175 YVITSVSWW 9 88 570.7899250643478 1139.5652971954955 2 570.8074340820312 MULTI HCD FTMS 0 0 0 19596 13920.5498046875 0.05087539637762389 10 -0.28130340576171875 4 Unmodified _YVITSVSWW_ EIF3B|p.V667I|1|0.2|ENSG00000106263|chr7:2375498-2375498|G/A|missense_variant 19.438996006549623 0.19240772610395238 2 [Y{I|L}][WR]MGAP{M(Oxidation (M))|F} 9 8 [Y{I|L}][WR]M + + 32.167 3.7583 0.50153 2.8227 2.8227 60.019 0 0 0 0 13.615012971296984 0 0 0 0.5 0 0 0 [Y{I|L}][WR]MGAP{M(Oxidation (M))|F} 2.8227 - 416 + NaN NaN 145465.7 NaN 15669 3929 19596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19601 80.982 NaN 379510 35 0 63002 0.263 -1 0 57 452.7595927624666 903.5046325917332 2 452.759521484375 MULTI HCD FTMS 0 0 0 19596 106238.1796875 0.14883731768464623 -4 0.12181854248046875 5 NaN NaN 2 {I|L}PNVD 5 -1 67.312 0 0 7.4501 0 0 0 362.2058763983714 362.2058763983714 40.858317385287876 0 0 0 0 1.2887254899964358 1.5228787452803376 0.4247425010840047 0 {I|L}PNVD 7.4501 - 111 + NaN NaN 146268.9 NaN 15670 3929 19596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19602 80.985 NaN 197290 35 0 12214 0.261 + 6643 FPLSSSSSFF 10 64 553.2643187858284 1104.5140846384568 2 553.2637329101562 MULTI HCD FTMS 0 0 0 19596 35513.625 0.4293332945469712 4 -0.10427093505859375 6 Unmodified _FPLSSSSSFF_ ENST00000503766.5_1_6:43190665-43190782:+|nuORF 12.531546534597751 0.39389615866941496 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 7 27.447 0 0 2.485 0 0 0 744.2858796426161 744.2858796426161 9.488474775526186 0 0 0 0 0 1.6989700043360187 0 0 + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 2.485 + + 130 NaN NaN 120975.4 NaN 15671 3929 19596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19604 80.99 NaN 789360 35 0 159430 0.327 + 28620 TQRGALFLLF 10 66 583.3398656954387 1164.6651784576773 2 583.34033203125 MULTI HCD FTMS 0 0 0 19603 377366.78125 0.6879648535507644 2 -0.0556793212890625 1 Unmodified _TQRGALFLLF_ ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF 57.24910588100465 0.05142613675551719 2 [QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 71.621 0 0 6.1495 6.1495 88.778 0 0 0 11.751736484954378 29.895002193797424 11.751736484954378 9.208187539523749 0 2.2302046884880937 0 0.8494850021680094 0.2742275032520141 [QT]RQ{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[QT]R[AG]{I|L}{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}Q{I|L}RQT{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}Q{I|L}R[AG]T{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}[AG]{I|L}RQT{M(Oxidation (M))|F};{I|L}{I|L}{M(Oxidation (M))|F}[AG]{I|L}R[AG]T{M(Oxidation (M))|F};[QT]R{I|L}{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Q{I|L}RQT{M(Oxidation (M))|F};[QT]RQ{I|L}{I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QT]R{I|L}{I|L}{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F} 6.1495;5.3589;5.0347;4.2441;4.2441;3.4572;3.3545;3.1663;2.6711;2.5639 -;+;-;-;-;-;-;-;-;- + 526 NaN NaN 214021.3 NaN 15672 3930 19603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19605 80.994 NaN 186530 35 0 23258 0.261 -1 0 66 545.2849322348478 1088.5553115364955 2 545.2850952148438 MULTI HCD FTMS 0 0 0 19603 77841.9765625 0.26704000052315735 5 -0.13378143310546875 2 NaN NaN 2 {I|L}{M(Oxidation (M))|F}S{I|L}{I|L}{I|L} 6 -1 56.72 0 0 5.2105 0 0 0 399.1280611627563 399.1280611627563 21.90350674422603 0 0 0 0 2.079689690656103 0 0.3807196863200844 0 {I|L}{M(Oxidation (M))|F}S{I|L}{I|L}{I|L} 5.2105 - 613 + NaN NaN 113135.5 NaN 15673 3930 19603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19606 80.998 NaN 119200 35 0 26646 0.261 + 3169 EAVLIDPVL 9 31 484.7868635596811 967.5591741861622 2 484.7868347167969 MULTI HCD FTMS 0 0 0 19603 55360.61328125 0.876975013763534 2 -0.0556793212890625 3 Unmodified _EAVLIDPVL_ ENSG00000105755|ENST00000292147|ETHE1;ENST00000595115.1_1_19:44030583-44031338:-|nuORF 15.847184025352803 0.2234401846867398 2 D[VP]{I|L} 4 5 26.198 0 0 2.7076 0 0 525.3165641869898 0 525.3165641869898 0 26.197887582883936 0 0 0 1 0 0 0 + D[VP]{I|L} 2.7076 + + 5 NaN NaN 135381.1 NaN 15674 3930 19603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19607 81.001 NaN 113460 35 0 12877 0.261 + 35638 YYIFIPSKF 9 55 589.3184601170282 1176.6223673008562 2 589.7881469726562 MULTI HCD FTMS 0 0 0 19603 22977.23046875 0.4854655092642646 -10 0.28554534912109375 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19398022840297344 2 YY{I|L} 3 6 37.447 0 0 3.1826 0 0 0 734.3873997530611 734.3873997530611 17.98332479720628 0 0 0 0 0.8494850021680094 2 0 0 + YY{I|L} 3.1826 + + 18 + NaN NaN 119227.3 NaN 15675 3930 19603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19608 81.004 NaN 80434 35 0 12573 0.264 -1 LSSGQCGG 8 50 404.1700878502061 NaN 0 404.1703186035156 PEAK HCD FTMS 0 0 0 19603 6119.0556640625 0.19799099858364638 7 -0.20276641845703125 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LSSGQC(Carbamidomethyl (C))GG_ ENST00000476870.5_1_7:100468185-100470922:+|nuORF 2.302733041254933 0.38822285293237185 2 Q 1 -1 2.4743 0 0 0.30685 0 0 438.1427442045153 237.10512720279533 675.2478714073106 0 0 0 0 0 0 0 0 0 Q 0.30685 + + 3 + NaN NaN 111187 NaN 15676 3930 19603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19609 81.008 NaN 87932 35 0 6649.9 0.261 + 18486 MQYCKVNIYM 10 41 646.7954606489335 1291.576368364667 2 646.7789306640625 MULTI HCD FTMS 0 0 0 19603 7960.615234375 0.07135357611430927 23 -0.6152496337890625 6 Unmodified _MQYCKVNIYM_ ENST00000523821.5_1_8:97251664-97251712:-|nuORF 6.2057823575117 0.44245551207394906 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 123310.7 NaN 15677 3930 19603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19611 81.013 NaN 2059400 35 0 185420 0.327 + 14845 LKEQKERA 8 112 501.2906072263501 1000.5666615195003 2 501.290771484375 MULTI HCD FTMS 0 0 0 19610 1523490.25 0.8618328433813848 2 -0.058563232421875 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 2 {I|L}DA[C(Carbamidomethyl (C))K]V 6 6 20.666 0 0 2.0654 0 0 131.13633517058184 180.07154260806877 311.20787777865064 0 0 0 0 0 0.3807196863200844 0 0.535666875892183 0.3252574989159953 {I|L}DA[C(Carbamidomethyl (C))K]V 2.0654 - 507 + NaN NaN 421703.2 NaN 15678 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19612 81.017 NaN 1159800 35 0 54536 0.261 + 815 AVKASARKTS 10 112 509.80379454164563 1017.5930361500913 2 509.8040466308594 MULTI HCD FTMS 0 0 0 19610 585964.375 0.4631262229058887 4 -0.1109161376953125 2 Unmodified _AVKASARKTS_ REV__ENSG00000179813|ENST00000313851|FAM216B 2.9952420565917617 0.4594494122822477 2 A 1 -1 5.8412 0 0 0.57402 0 0 105.07970308046363 838.4626920307832 943.5423951112468 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.57402 + + 270 + NaN NaN 268312.5 NaN 15679 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19613 81.021 NaN 275400 35 0 58955 0.261 + 9581 HRSSRLSI 8 66 478.27618718912095 954.5378214450419 2 479.2779235839844 MULTI HCD FTMS 0 0 0 19610 65123.55078125 0.5416647307916416 -3 0.078582763671875 3 Unmodified _HRSSRLSI_ REV__ENST00000258301.5_1_1:180957477-180959190:-|nuORF 24.020572477871973 0.4170589785259073 2 {M(Oxidation (M))|F}{I|L}S{I|L} 4 -1 26.797 0 0 2.8073 0 0 476.26305445461065 0 476.26305445461065 0 7.755762612236904 0 0 0 1.0484550065040281 0 0.25 0 {M(Oxidation (M))|F}{I|L}S{I|L} 2.8073 - 81 + NaN NaN 127196.2 NaN 15680 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19614 81.024 NaN 161130 35 0 43414 0.261 -1 0 53 437.7724535990232 873.5303542648464 2 437.77227783203125 MULTI HCD FTMS 0 0 0 19610 72532.640625 0.6978825563750732 -2 0.04570770263671875 4 NaN NaN 2 {I|L}PA 3 -1 49.679 0 0 5.6872 0 0 0 589.3348482721311 589.3348482721311 42.689549981487076 0 0 0 0 0.8252574989159953 1.5228787452803376 0 0 {I|L}PA 5.6872 - 43 + NaN NaN 132404.3 NaN 15681 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19615 81.027 NaN 367320 35 0 20393 0.261 + 11934 KFITEFPLF 9 88 571.318842638444 1140.623132343688 2 571.319091796875 MULTI HCD FTMS 0 0 0 19610 59477.8125 0.7223795267920504 -3 0.078582763671875 5 Unmodified _KFITEFPLF_ ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1 32.78568957990786 0.09846250359632436 2 [YV]{I|L}DK{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9 4 + 59.529 0 0 5.219 5.219 86.009 0 0 0 8.08114473761087 13.428637390930263 8.08114473761087 8.08114473761087 0 1.2396518287104437 1.154901959985743 0 0 [YV]{I|L}DK{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[YN]{I|L}Y[{I|L}V]P{I|L}{M(Oxidation (M))|F};[YV]{I|L}{M(Oxidation (M))|F}KDP{I|L}{M(Oxidation (M))|F};[Y{I|L}]VDK{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[YV]AGY[{I|L}V]P{I|L}{M(Oxidation (M))|F};[YN]{I|L}YP[{I|L}V]{I|L}{M(Oxidation (M))|F};[YV]QY[{I|L}V]P{I|L}{M(Oxidation (M))|F};[Y{I|L}]V{M(Oxidation (M))|F}KDP{I|L}{M(Oxidation (M))|F};[YV]AGYP[{I|L}V]{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][{I|L}T]K{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 5.219;4.5105;4.3819;4.0275;3.8839;3.5951;3.5751;3.1905;2.9685;2.9315 -;-;-;-;-;-;-;-;-;- 1623 NaN NaN 144291.6 NaN 15682 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19616 81.031 NaN 200560 35 0 31518 0.261 + 19082 NERPLEDQL 9 56 557.2818568188387 1112.5491607044773 2 557.2685546875 MULTI HCD FTMS 0 0 0 19610 8808.921875 0.12616707187820023 8 -0.235595703125 6 Unmodified _NERPLEDQL_ ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A 9.38312468134398 0.279288223203164 2 {I|L}{M(Oxidation (M))|F}DK{I|L} 5 6 33.443 0 0 3.006 0 0 478.1888600080094 0 478.1888600080094 0 22.47425010840047 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}DK{I|L} 3.006 - 45 NaN NaN 119585 NaN 15683 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19617 81.034 NaN 104190 35 0 5349.6 0.261 -1 EYFRWPMLL 9 52 635.8177448114096 NaN 0 635.8175048828125 PEAK HCD FTMS 0 0 0 19610 26643.677734375 0.35432675344634196 -11 0.30841064453125 7 Oxidation (M) _EYFRWPM(Oxidation (M))LL_ ENSG00000137040|ENST00000259569|RANBP6 20.453626601364224 0.18435338882370536 2 W 1 -1 6.7217 0 0 0.52942 0 0 595.2740261445005 485.24384485416255 1080.517870998663 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.52942 + + 18 + NaN NaN 126905 NaN 15684 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19618 81.037 NaN 73551 35 0 10700 0.264 + 23625 RPPPGARG 8 42 404.2329439970461 806.4513350608922 2 404.2330322265625 MULTI HCD FTMS 0 0 0 19610 25373.87109375 0.011939027131264093 29 -0.799957275390625 8 Unmodified _RPPPGARG_ KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant 0.6903765706972694 0.5409681170271811 2 R[{M(Oxidation (M))|F}V] 3 7 8.9524 0 0 1.1101 0 0 386.19456679511876 0 386.19456679511876 0 3.4678748622465623 0 0 0 0 0 0 0 R[{M(Oxidation (M))|F}V] 1.1101 - 7 NaN NaN 126865.3 NaN 15685 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19619 81.041 NaN 138000 35 0 35216 0.261 + 31935 VYPAGFVYI 9 40 514.7762906703402 1027.5380284074804 2 514.776611328125 MULTI HCD FTMS 0 0 0 19610 18599.33203125 0.09221278663275598 -5 0.13800811767578125 9 Unmodified _VYPAGFVYI_ ACTL6A-ALG3|1|fusion;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3 20.871210003555333 0.18003371494288972 2 VY{I|L} 3 6 35.445 0 0 3.4495 0 0 634.3110715529751 0 634.3110715529751 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 + VY{I|L} 3.4495 + + 8 NaN NaN 115834.8 NaN 15686 3931 19610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19621 81.046 NaN 492730 35 0 21088 0.327 + 11820 KELQKGPFV 9 87 523.3037745104898 NaN 0 523.3038940429688 PEAK HCD FTMS 0 0 0 19620 394859 0.6090748503112355 8 -0.23236083984375 1 Unmodified _KELQKGPFV_ REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF 10.073929032068715 0.24642998803896465 2 NV[RD]QV 6 -1 11.872 0 0 1.1365 0 0 62.04101730909458 268.1235750787719 330.1645923878665 0 0 0 0 0 0.8807196863200843 0 0.3494850021680094 0 NV[RD]QV 1.1365 - 122 + NaN NaN 165906.6 NaN 15687 3932 19620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19622 81.05 NaN 725430 35 0 138290 0.261 + 17628 LYYDAIWHF 9 82 614.2952551878867 1226.5759574425733 2 614.2958984375 MULTI HCD FTMS 0 0 0 19620 282098.53125 0.016495111039397384 30 -0.8261795043945312 2 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 92.8221339359638 0.0044520161739443126 2 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 90.794 0 0 7.4022 7.4022 86.704 0 0 0 0.72051538364164 0.72051538364164 0.72051538364164 0.72051538364164 0 2.8667053245199625 2 0.3252574989159953 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};{I|L}YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y[WH]{I|L}{M(Oxidation (M))|F};[YN][KG]Y{I|L}[VS]H{M(Oxidation (M))|F} 7.4022;7.3435;5.3874;5.0411;5.0145;4.4711;4.332;3.1048;2.7121;2.4835 +;+;-;-;-;-;-;-;-;- + 1198 + NaN NaN 210113.9 NaN 15688 3932 19620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19623 81.054 NaN 545740 35 0 69272 0.261 + 13587 KYPENFFLL 9 76 585.8131605635726 1169.6117681939452 2 585.8136596679688 MULTI HCD FTMS 0 0 0 19620 288397.34375 0.0014660031339308066 207 -4.9801483154296875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 72.96794272382148 0.008127836904478181 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 76.775 0 0 6.5641 6.5641 89.541 0 0 0 6.2718185701353235 54.352190335775745 6.2718185701353235 9.208187539523749 0 2.3494850021680094 0 0 1.7416440611282626 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6.5641;5.7769;3.4843 +;-;- + 539 NaN NaN 178017.2 NaN 15689 3932 19620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19624 81.057 NaN 386630 35 0 71795 0.261 + 11052 IYFPYVLKI 9 61 578.34422825293 1154.6739035726598 2 578.3446655273438 MULTI HCD FTMS 0 0 0 19620 142255.453125 0.2531896670538896 5 -0.14708709716796875 4 Unmodified _IYFPYVLKI_ ENSG00000188921|ENST00000495827|HACD4 42.09456458481378 0.05572955244001856 2 {I|L}Y{M(Oxidation (M))|F} 3 6 48.416 0 0 4.1931 0 0 0 728.4354022102135 728.4354022102135 36.2101498947667 0 0 0 0 1 1.6989700043360187 0 0 + {I|L}Y{M(Oxidation (M))|F} 4.1931 + + 83 + NaN NaN 146803.4 NaN 15690 3932 19620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19625 81.066 NaN 237820 35 0 30119 0.261 -1 YLGRLTNFCV 10 72 621.8173968209593 1241.6202407087185 2 622.3165283203125 MULTI HCD FTMS 0 0 0 19620 45869.51171875 0.13880279002402957 37 -1.0162506103515625 5 Carbamidomethyl (C) _YLGRLTNFC(Carbamidomethyl (C))V_ ENST00000525340.5_1_11:62340970-62341174:-|nuORF 18.1463463914782 0.3413772152514074 2 [YN]{I|L} 3 -1 30.502 0 0 2.4566 0 0 0 848.4075644304102 848.4075644304102 16.064921830680703 0 0 0 0 0.3054621874040891 1.6989700043360187 0 0 [YN]{I|L} 2.4566 - 284 NaN NaN 126401.8 NaN 15691 3932 19620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19627 81.071 NaN 1175700 35 0 197050 0.327 + 28287 TLRPDYGD 8 84 468.7241690632123 935.4337851932246 2 468.72381591796875 MULTI HCD FTMS 0 0 0 19626 532268.3125 1 0 0 1 Unmodified _TLRPDYGD_ HEPACAM|p.R96G|1|0.35|ENSG00000165478|chr11:124924869-124924869|G/C|missense_variant 7.289230182591677 0.5311777711368266 2 T{I|L}R 3 5 25.027 0 0 2.6754 0 0 0 562.1837862604124 562.1837862604124 17.795044180973214 0 0 0 0 0 0 0 0.3054621874040891 + T{I|L}R 2.6754 + + 27 + NaN NaN 267265.8 NaN 15692 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19628 81.076 NaN 431970 35 0 145100 0.261 + 12581 KTPLQCVM 8 64 460.2395390397378 918.4645251462756 2 460.23907470703125 MULTI HCD FTMS 0 0 0 19626 279230.5625 0.6402961790947663 4 -0.121337890625 2 Unmodified _KTPLQCVM_ ENST00000465687.1_1_3:88366676-88366832:+|nuORF 4.75600775471527 0.5349361699807423 2 [KT]{I|L} 3 5 10.458 0 0 1.1386 0 0 0 573.1959932916624 573.1959932916624 2.385606273598313 0 0 0 0 0 0 0 0 [KT]{I|L} 1.1386 - 34 + NaN NaN 156936.2 NaN 15693 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19629 81.079 NaN 515850 35 0 152200 0.261 -1 IPVTIMDVF 9 67 525.7806633528662 1049.5467737725323 2 525.7808227539062 MULTI HCD FTMS 0 0 0 19626 283147.8125 0.7682212963800615 3 -0.08852386474609375 3 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 32.30548876998284 0.10066689432505688 2 TYPDV{M(Oxidation (M))|F} 6 -1 48.932 0 0 4.6622 0 0 309.20482070136876 0 309.20482070136876 0 23.870642210860893 0 0 0 1.9916440611282626 0 0.3054621874040891 0 TYPDV{M(Oxidation (M))|F} 4.6622 - 212 NaN NaN 165969.1 NaN 15694 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19630 81.083 NaN 654630 35 0 89395 0.261 -1 0 83 566.2980512400009 1130.5815495468016 2 566.2982788085938 MULTI HCD FTMS 0 0 0 19626 308202.875 0.8627139915134242 27 -0.74139404296875 4 NaN NaN 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 55.965 0 0 4.9501 0 0 291.1577320783219 0 291.1577320783219 0 9.341320951100855 0 0 0 2.586696871556164 0 0.28872548999643577 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.9501 - 726 NaN NaN 189875.8 NaN 15695 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19631 81.086 NaN 479050 35 0 56719 0.261 + 14522 LFDITGQDF 9 61 528.2563495308232 1054.4981461284463 2 528.757568359375 MULTI HCD FTMS 0 0 0 19626 135181.828125 0.9050940036889463 3 -0.08852386474609375 5 Unmodified _LFDITGQDF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 74.19965305603844 0.007729275404663812 2 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F} 9 2 + 76.506 0 0 7.2552 7.2552 90.755 0 0 0 4.762036441594191 52.08175076054957 4.762036441594191 9.208187539523749 0 2.75 0 0.7614393726401688 0 {[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TGQD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}TG[AG]D{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L}T{[WN]|[YH]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))E]|[WC]}GA{I|L}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[WC(Carbamidomethyl (C))]A{I|L}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))E]|[WC]}Q{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[QG]|[NA]}{[ET]|[MV]}{I|L}V{M(Oxidation (M))|F} 7.2552;6.382;5.167;3.227;3.1836;2.9098;2.0315 -;-;-;-;-;-;- 341 NaN NaN 157655.5 NaN 15696 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19632 81.089 NaN 467730 35 0 113440 0.261 + 18788 NADPILISL 9 63 478.27618718912095 954.5378214450419 2 478.7786560058594 MULTI HCD FTMS 0 0 0 19626 126699.34375 1 0 0 6 Unmodified _NADPILISL_ ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C 40.23920728925047 0.06424668180817725 2 {I|L}{I|L}S{I|L} 4 5 48.928 0 0 5.1258 0 0 510.24336440254064 0 510.24336440254064 0 43.48381297763133 0 0 0 1.3494850021680094 0 0.3494850021680094 0 + {I|L}{I|L}S{I|L} 5.1258 + + 107 NaN NaN 162590 NaN 15697 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19633 81.093 NaN 783800 35 0 72780 0.261 + 27432 SYVGLVYMF 9 83 547.7652928128854 1093.5160326925707 2 547.775146484375 MULTI HCD FTMS 0 0 0 19626 33295.07421875 0.3550884544684825 -3 0.08142852783203125 7 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 46.92087301778293 0.0358782797343276 2 [MN]KE{I|L}DPT{M(Oxidation (M))|F} 9 7 + 55.773 0 0 5.1003 5.1003 84.786 0 0 0 2.919562702124452 6.116130788406757 2.919562702124452 5.656753288559813 0 0.8494850021680094 0 1.8226825097560422 0 [MN]KE{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}NRPT{M(Oxidation (M))|F};[MN]{[ET]|[MV]}VRPT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}DNRPT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}RV[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}QNS{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}RNPPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}NRMT{I|L} 5.1003;4.583;4.5519;4.538;4.1461;4.1217;4.102;4.0296;4.0177;3.9193 -;-;-;-;-;-;-;-;-;- 1909 + NaN NaN 212278.8 NaN 15698 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19634 81.096 NaN 243460 35 0 33308 0.261 + 19928 NYFPFQWKL 9 67 621.8173968209593 1241.6202407087185 2 622.3173828125 MULTI HCD FTMS 0 0 0 19626 61714.10546875 0.18674909982523696 38 -1.0529022216796875 8 Unmodified _NYFPFQWKL_ ENSG00000165102|ENST00000379644|HGSNAT;ENST00000519705.1_1_8:43052051-43054709:+|nuORF;nc|ENSG00000165102|Q68CP4|HGSNAT 20.453626601364224 0.18364154288633264 2 [YN]{M(Oxidation (M))|F} 3 6 34.626 0 0 2.7888 0 0 0 814.422583808581 814.422583808581 11.950214375402112 0 0 0 0 0.7302046884880937 1.6989700043360187 0 0.28872548999643577 + [YN]{M(Oxidation (M))|F} 2.7888 + + 190 NaN NaN 151278.3 NaN 15699 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19635 81.099 NaN 245420 35 0 30830 0.261 + 11567 IYSTAFDYF 9 66 563.7583821028218 1125.5022112724434 2 563.7582397460938 MULTI HCD FTMS 0 0 0 19626 96182.1640625 0.04110037564996412 24 -0.6554336547851562 9 Unmodified _IYSTAFDYF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1 67.34385681178166 0.00994769994983633 2 {[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}T]{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 9 3 + 46.876 0 0 4.1649 4.1649 83.952 0 0 0 0.913924543379494 23.575090722850263 0.913924543379494 6.7596873227228045 0 1.3494850021680094 0 0.7059771852360797 0 {[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}T]{M(Oxidation (M))|F}DY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}[KP]{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}V]C(Carbamidomethyl (C)){M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}T]D{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}V][CG]{M(Oxidation (M))|F}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}T]{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]D;[Y{I|L}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D[WR]D 4.1649;3.5643;3.2514;2.5838;2.4284;1.7833;1.1361 -;-;-;-;-;-;- 192 NaN NaN 156025.7 NaN 15700 3933 19626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19637 81.104 NaN 3309300 35 0 1691400 0.327 + 21007 PLNVDLVL 8 46 441.76845900555986 881.5223650779197 2 441.7688903808594 MULTI HCD FTMS 0 0 0 19636 3867158 0.798440513450396 1 -0.01955413818359375 1 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 39.957323273324995 0.23147789240432073 2 AD{I|L}V{I|L} 5 -1 59.068 0 0 6.7007 0 0 352.20942885566564 0 352.20942885566564 0 51.620768972555595 0 0 0 1.9247425010840047 0 0.4247425010840047 0 AD{I|L}V{I|L} 6.7007 - 62 NaN NaN 392499.8 NaN 15701 3934 19636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19638 81.108 NaN 674570 35 0 169800 0.261 + 34329 YPEDFAIDL 9 65 541.755735889454 1081.4969188457078 2 541.7562255859375 MULTI HCD FTMS 0 0 0 19636 378501.96875 0.7838749249669531 -2 0.0585479736328125 2 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 49.93300154707207 0.03166451819912738 2 A{I|L}D{I|L} 4 5 46.938 0 0 4.3401 0 0 651.2529842381782 0 651.2529842381782 0 13.496075289514096 0 0 0 1.5 0 0 0 + A{I|L}D{I|L} 4.3401 + + 123 NaN NaN 202940.5 NaN 15702 3934 19636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19639 81.112 NaN 320490 35 0 15959 0.261 + 12488 KREDRVIF 8 84 531.8084064370091 NaN 0 531.8176879882812 PEAK HCD FTMS 0 0 0 19636 20366.3125 0.383958759849768 -2 0.0585479736328125 3 Unmodified _KREDRVIF_ ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant 28.486842064014134 0.3795038552627567 2 {I|L} 1 7 10.506 0 0 0.98968 0 0 783.4393703917932 162.05587183170158 945.4952422234948 0 0 0 0 0 0.7742275032520141 0 0 0 + {I|L} 0.98968 + + 31 + NaN NaN 164094.7 NaN 15703 3934 19636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19640 81.115 NaN 279050 35 0 51405 0.262 + 15294 LPAGIVAVL 9 54 426.7813069159882 851.5480608987764 2 426.7815246582031 MULTI HCD FTMS 0 0 0 19636 122414.4140625 0.6959086162557107 1 -0.01955413818359375 4 Unmodified _LPAGIVAVL_ ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD;nc|ENSG00000122882|O95905-3|ECD 28.173230860318316 0.11963627304438548 2 VAV{I|L} 4 5 43.928 0 0 5.1586 0 0 451.27914920165745 0 451.27914920165745 0 20.46002544127475 0 0 0 1.3494850021680094 0 0 0 + VAV{I|L} 5.1586 + + 33 NaN NaN 132248.4 NaN 15704 3934 19636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19641 81.119 NaN 276150 35 0 20526 0.261 + 493 AMCVPSSF 8 76 421.18135196583046 840.3481509984609 2 422.1873779296875 MULTI HCD FTMS 0 0 0 19636 68643.96875 0.8134202432902348 -2 0.0585479736328125 5 Unmodified _AMCVPSSF_ REV__ENSG00000115239|ENST00000263634|ASB3;REV__nc|ENSG00000115239|Q9Y575-2|ASB3;REV__nc|ENSG00000115239|Q9Y575-3|ASB3 20.871210003555333 0.44023077629866025 2 {[DS]|[MA]|[CV]|TT}[MT]W{[DS]|[MA]|[CV]|TT} 7 -1 + 22.719 0 0 2.7036 2.7036 83.376 0 0 0 5.201911401963706 5.5007706637676925 5.201911401963706 8.181829316782764 0 0.3807196863200844 0.958607314841775 0.6861818737241735 0 {[DS]|[MA]|[CV]|TT}[MT]W{[DS]|[MA]|[CV]|TT};[YG]P{[WT]|[RM]}{[MS]|[{M(Oxidation (M))|F}A]};{[DS]|[MA]|[CV]|TT}[MT]{[DS]|[MA]|[CV]|TT}W;[YG]W{[ET]|[MV]}W;[YG][DV]W{[DS]|[MA]|[CV]|TT};[YG]W[TP]{[MS]|[{M(Oxidation (M))|F}A]};{[DS]|[MA]|[CV]|TT}C(Carbamidomethyl (C))[Y{I|L}][PS];{[DS]|[MA]|[CV]|TT}AM{[TV]|[{I|L}S]}{[MS]|[{M(Oxidation (M))|F}A]};[YG][DV]{[DS]|[MA]|[CV]|TT}W 2.7036;1.7299;1.6304;1.0899;0.81068;0.80394;0.69703;0.36088;0.19052 -;-;-;-;-;-;-;-;- 104 + NaN NaN 123387.3 NaN 15705 3934 19636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19643 81.124 NaN 517880 35 0 103070 0.327 -1 0 62 452.7595927624666 903.5046325917332 2 452.7598571777344 MULTI HCD FTMS 0 0 0 19642 663733.8125 0.9298762516422086 2 -0.0689849853515625 1 NaN NaN 2 {I|L}PNVD{I|L} 6 -1 76.988 0 0 8.521 0 0 0 249.1215761774047 249.1215761774047 47.523656471886326 0 0 0 0 2 1.6989700043360187 0.4247425010840047 0 {I|L}PNVD{I|L} 8.521 - 159 + NaN NaN 180199.4 NaN 15706 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19644 81.128 NaN 424740 35 0 38888 0.261 + 17098 LYLEFLQKF 9 68 600.8369655514308 1199.6593781696615 2 600.83740234375 MULTI HCD FTMS 0 0 0 19642 297126.21875 0.554565705326177 2 -0.0689849853515625 2 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 103.41943736471063 0.004016698775839292 2 {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F} 9 0 + 109.1 0 0 9.0939 9.0939 93.471 0 0 0 9.361818737241734 9.361818737241734 9.361818737241734 9.208187539523749 0 3.079689690656103 1.6989700043360187 0 1.6237125054200234 + + {I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};{I|L}Y{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}Q{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}[AG]{I|L}K{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}P[SG]Y{I|L}K{M(Oxidation (M))|F};{I|L}[RH]QM{I|L}QK{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[Y{I|L}]{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F} 9.0939;8.3263;8.3135;7.4172;7.2748;6.3785;4.5007;4.2249;3.9016;3.7332 +;-;+;-;-;-;-;-;-;- + 1220 + NaN NaN 157380.9 NaN 15707 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19645 81.132 NaN 1104100 35 0 198920 0.261 + 16158 LPVATDFEF 9 70 519.761176873301 1037.507800813402 2 519.7611694335938 MULTI HCD FTMS 0 0 0 19642 465837.03125 0.640639586450374 -1 0.01955413818359375 3 Unmodified _LPVATDFEF_ ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B 100.37149154755038 0.004254194004462789 2 ATD{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 60.527 0 0 5.8339 0 0 309.2047291486344 0 309.2047291486344 0 55.04222849768787 0 0 0 2.416386562212267 0 0.7742275032520141 0 + ATD{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.8339 + + 130 NaN NaN 265635.8 NaN 15708 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19646 81.135 NaN 662000 35 0 52347 0.261 + 15165 LMSLIINTF 9 86 534.2939527474999 1066.5733525617998 2 534.29443359375 MULTI HCD FTMS 0 0 0 19642 183788.671875 0.09639887459965185 8 -0.2329559326171875 4 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 103.35351024395868 0.004027461563756449 2 TN{I|L}{I|L}{[TV]|[{I|L}S]}KN 8 6 76.209 0 0 7.1452 0 0 165.0786610334 0 165.0786610334 0 44.003464757050246 0 0 0 2.079689690656103 0 1.7302046884880937 0.75 TN{I|L}{I|L}{[TV]|[{I|L}S]}KN 7.1452 - 1735 NaN NaN 197025.5 NaN 15709 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19647 81.138 NaN 243440 35 0 44768 0.261 + 28621 TQRGALFLLF 10 55 583.3398656954387 1164.6651784576773 2 583.3401489257812 MULTI HCD FTMS 0 0 0 19642 77440.1015625 0.1411784788102666 7 -0.196624755859375 5 Unmodified _TQRGALFLLF_ ENSG00000102359|ENST00000373004|SRPX2;ENST00000481988.1_1_X:99901319-99905990:+|nuORF 23.789781309258295 0.28859042913526417 2 {I|L}Q{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 6 5 47.396 0 0 4.0695 0 0 385.20909316230626 0 385.20909316230626 0 47.39577516576787 0 0 0 1.2614393726401687 0 0 0 {I|L}Q{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 4.0695 - 39 NaN NaN 139936.1 NaN 15710 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19648 81.142 NaN 392140 35 0 57539 0.261 + 23156 RFILNLPTF 9 87 560.8296409146644 1119.6447288961288 2 560.830322265625 MULTI HCD FTMS 0 0 0 19642 53980.96875 0.012100167041175582 33 -0.9119720458984375 6 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 45.69961567697781 0.039180348357221985 2 [YV]T{I|L} 4 8 43.288 0 0 3.8663 0 0 0 640.3597964864792 640.3597964864792 23.450528104279012 0 0 0 0 1 1.5228787452803376 0.4247425010840047 0 [YV]T{I|L} 3.8663 - 462 NaN NaN 142206.5 NaN 15711 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19649 81.145 NaN 275710 35 0 26669 0.261 -1 MPYGTVNLL 9 81 512.2617313429564 1022.5089097527128 2 512.2618408203125 MULTI HCD FTMS 0 0 0 19642 134258.09375 0.8063073228879414 2 -0.0689849853515625 7 Oxidation (M) _M(Oxidation (M))PYGTVNLL_ ENSG00000088298|ENST00000374492|EDEM2;nc|ENSG00000088298|Q9BV94-2|EDEM2 22.736283301280096 0.1639198954644489 2 {I|L}{I|L} 2 -1 14.949 0 0 1.4619 0 0 778.3296375959 0 778.3296375959 0 2.016675202793719 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L} 1.4619 + + 224 NaN NaN 132240.8 NaN 15712 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19650 81.148 NaN 190720 35 0 51034 0.261 + 17320 LYPQFMFHL 9 46 598.3021471797576 1194.5897414263152 2 598.3028564453125 MULTI HCD FTMS 0 0 0 19642 54771.32421875 0.0182477545780492 57 -1.5761871337890625 8 Unmodified _LYPQFMFHL_ ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A 12.531546534597751 0.2520865569484384 2 [Y{I|L}]{[TV]|[{I|L}S]}T 5 7 25.458 0 0 2.1311 0 0 0 614.2578868890907 614.2578868890907 18.46787486224656 0 0 0 0 0.5 2 0 0 [Y{I|L}]{[TV]|[{I|L}S]}T 2.1311 - 24 NaN NaN 132324.9 NaN 15713 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19651 81.152 NaN 150620 35 0 12558 0.261 -1 GYLCKYQFE 9 54 604.2747108419086 1206.534868750617 2 604.2747192382812 MULTI HCD FTMS 0 0 0 19642 37699.76953125 0.7197403066357655 1 -0.03617095947265625 9 Carbamidomethyl (C) _GYLC(Carbamidomethyl (C))KYQFE_ ENSG00000176435|ENST00000342213|CLEC14A 14.838274106304384 0.23215694253501695 2 [YG]{I|L}T{M(Oxidation (M))|F}Y{[QG]|[NA]}G{[DS]|[MA]|[CV]|TT} 11 -1 + 60.533 0 0 5.0171 5.0171 83.034 0 0 0 7.367585652254185 1.5757731917779338 1.5757731917779338 1.5757731917779338 0 1.9247425010840047 0 0 0.805462187404089 [YG]{I|L}T{M(Oxidation (M))|F}Y{[QG]|[NA]}G{[DS]|[MA]|[CV]|TT};[YG]{I|L}T{M(Oxidation (M))|F}Y{[QG]|[NA]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YG]{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}T{I|L}{[DS]|[MA]|[CV]|TT};M[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}Y{[QG]|[NA]}G{[DS]|[MA]|[CV]|TT};M[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}Y{[QG]|[NA]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.0171;4.8865;4.3437;4.1201;3.1643 -;-;-;-;- 88 + NaN NaN 112685.7 NaN 15714 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19652 81.155 NaN 109740 35 0 9836 0.262 -1 MLLAVLIW 8 56 487.790896412104 973.5672398910081 2 487.79119873046875 MULTI HCD FTMS 0 0 0 19642 51490.2265625 0.6405879170662192 -1 0.01955413818359375 10 Oxidation (M) _M(Oxidation (M))LLAVLIW_ ENSG00000149507|ENST00000278855|OOSP2 2.8892196856762586 0.5377058178582064 2 ES 2 -1 7.0783 0 0 0.72705 0 0 299.1964035646393 455.26851260756433 754.4649161722036 0 0 0 0 0 0 0 0 0 ES 0.72705 - 4 + NaN NaN 116484.4 NaN 15715 3935 19642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19654 81.16 NaN 1640400 35 0 174230 0.327 + 23913 RTLDRDLL 8 104 501.2906072263501 1000.5666615195003 2 501.2907409667969 MULTI HCD FTMS 0 0 0 19653 1034722.125 0.5853385087947748 7 -0.19678497314453125 1 Unmodified _RTLDRDLL_ ENSG00000166159|ENST00000299194|LRTM2 8.593279151180031 0.5292430274356741 2 {I|L}DA[NP]D{I|L}{I|L} 8 5 18.695 0 0 1.8684 0 0 131.13644907254508 0 131.13644907254508 0 4.442059438411906 0 0 0 0 0 0.535666875892183 0.3494850021680094 {I|L}DA[NP]D{I|L}{I|L} 1.8684 - 632 + NaN NaN 332396.9 NaN 15716 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19655 81.164 NaN 1080700 35 0 266830 0.261 -1 KFWRCINYTD 10 70 468.2242446612218 NaN 0 468.2242736816406 PEAK HCD FTMS 0 0 0 19653 482980.40625 0.9302765102694209 1 -0.03281402587890625 2 Carbamidomethyl (C) _KFWRC(Carbamidomethyl (C))INYTD_ ENSG00000185313|ENST00000449082|SCN10A 5.40270961882225 0.33556031839241995 2 {I|L} 1 -1 6.9897 0 0 0.74801 0 0 100.05319170515516 718.2738126511456 818.3270043563008 0 0 0 0 0 0 0 0 0 {I|L} 0.74801 + + 25 + NaN NaN 251500.8 NaN 15717 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19656 81.168 NaN 355110 35 0 110340 0.261 + 10 AAFGIFFF 8 63 460.2395390397378 918.4645251462756 2 460.74212646484375 MULTI HCD FTMS 0 0 0 19653 184416.796875 0.6834284280238502 3 -0.08850860595703125 3 Unmodified _AAFGIFFF_ REV__ENSG00000131055|ENST00000376075|COX4I2 6.354104778181461 0.5325651638111438 2 V[NP][PS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 15.29 0 0 1.6647 0 0 112.08037452158733 0 112.08037452158733 0 4.832428926701693 0 0 0 0 0 0.805462187404089 0 V[NP][PS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6647 - 55 + NaN NaN 136096.9 NaN 15718 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19657 81.171 NaN 474860 35 0 57258 0.261 + 28668 TSEAFGDV 8 85 413.1831440141963 824.3517350951926 2 413.1818542480469 MULTI HCD FTMS 0 0 0 19653 204177.203125 0.9489671328396586 1 -0.03281402587890625 4 Unmodified _TSEAFGDV_ REV__ENSG00000196712|ENST00000358273|NF1;REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF;REV__nc|ENSG00000196712|P21359-2|NF1;REV__nc|ENSG00000196712|P21359-3|NF1;REV__nc|ENSG00000196712|P21359-4|NF1;REV__nc|ENSG00000196712|P21359-5|NF1;REV__nc|ENSG00000196712|P21359-6|NF1;REV__NF1-CCDC47|1|fusion 30.224811164608877 0.3565035853404968 2 {[DS]|[MA]|[CV]|TT}WT{M(Oxidation (M))|F} 5 -1 35.239 0 0 4.2747 0 0 0 185.05912201802155 185.05912201802155 12.500452295863553 0 0 0 0 1.079689690656103 0.7958800173440752 0.3807196863200844 0 {[DS]|[MA]|[CV]|TT}WT{M(Oxidation (M))|F} 4.2747 - 147 NaN NaN 159772.6 NaN 15719 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19658 81.174 NaN 1196800 35 0 279930 0.261 + 21599 PYNPLWAQL 9 86 551.2897008140378 1100.5648486948755 2 551.290283203125 MULTI HCD FTMS 0 0 0 19653 415979.53125 0.6549256899272176 -3 0.08852386474609375 5 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 78.14939416004806 0.006451203201226903 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P]WAQ{I|L} 9 0 + 64.904 0 0 5.8973 5.8973 88.377 0 0 0 13.511966051297122 14.973024840566467 13.511966051297122 9.208187539523749 0 1.9247425010840047 1.154901959985743 0 0.6694451763165201 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P]WAQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{I|L}P]WA[AG]{I|L};[YN]P[{I|L}P]WAQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}GG[{I|L}P]WAQ{I|L};[YN]P[{I|L}P]WA[AG]{I|L};[QA]{I|L}{[DS]|[MA]|[CV]|TT}QQAQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KQ]{[MG]|[TS]}HQ{I|L};[Q{I|L}]A{[DS]|[MA]|[CV]|TT}QQAQ{I|L};[Q{I|L}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}QQAQ{I|L};[Q{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[MG]|[TS]}HQ{I|L} 5.8973;5.0606;4.6696;4.4523;3.8329;3.1838;2.657;2.3643;2.2043;1.942 +;-;-;-;-;-;-;-;-;- + 1120 NaN NaN 267792.1 NaN 15720 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19659 81.178 NaN 236350 35 0 38745 0.261 + 16156 LPVASDSSPMG 11 61 530.7521267997031 NaN 0 530.752197265625 PEAK HCD FTMS 0 0 0 19653 206386.25 1 0 0 6 Unmodified _LPVASDSSPMG_ ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1 22.736283301280096 0.2352529050846619 2 PVA 3 8 29.253 0 0 2.761 0 0 113.0856975912571 676.2229244909596 789.3086220822167 0 0 0 0 0 1.305462187404089 0 0 0 + PVA 2.761 + + 30 + NaN NaN 117640.2 NaN 15721 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19660 81.181 NaN 349830 35 0 32568 0.263 + 25736 SKTSGKAK 8 78 403.7396821361156 805.4648113390313 2 403.7397766113281 MULTI HCD FTMS 0 0 0 19653 365811.6875 1 0 0 7 Unmodified _SKTSGKAK_ ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5 0 0.5419923896992614 2 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.6754 0 0 640.3819999150063 0 640.3819999150063 0 10.73064017839119 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6754 - 50 + NaN NaN 147145.1 NaN 15722 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19661 81.184 NaN 285000 35 0 27657 0.261 + 2185 DIFNTSLVF 9 68 528.2738775161816 1054.5332020991632 2 528.2568359375 MULTI HCD FTMS 0 0 0 19653 30633.841796875 1 0 0 8 Unmodified _DIFNTSLVF_ chr5:157463333-157468722|434|15.42|0.87|4.14|+|ENST00000435489|NIPAL4,NIPAL4;ENSG00000172548|ENST00000311946|NIPAL4;nc|ENSG00000172548|Q0D2K0-2|NIPAL4 8.593279151180031 0.2858735984551981 2 {I|L}T{[QG]|[NA]}D{M(Oxidation (M))|F} 6 6 25.406 0 0 2.4092 0 0 375.21790776498193 0 375.21790776498193 0 -2.033569664897712 -2.033569664897712 0 0 0 0 0 0 {I|L}T{[QG]|[NA]}D{M(Oxidation (M))|F} 2.4092 - 327 + NaN NaN 131956.2 NaN 15723 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19662 81.188 NaN 220420 35 0 39336 0.261 + -1 LYPANYCCS 9 59 574.231193575262 1146.4478342173238 2 574.2318725585938 MULTI HCD FTMS 0 0 0 19653 136903.953125 0.7659651379481599 -10 0.28509521484375 9 2 Carbamidomethyl (C) _LYPANYC(Carbamidomethyl (C))C(Carbamidomethyl (C))S_ REV__ENSG00000143776|ENST00000366766|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-5|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25|CDC42BPA 2.302733041254933 0.33356062215410776 2 [Y{I|L}]SD 4 -1 20.177 0 0 1.76 0 0 0 665.2206146300394 665.2206146300394 12.730012720637374 0 0 0 0 1 0 0 0 [Y{I|L}]SD 1.76 - 52 NaN NaN 137851.3 NaN 15724 3936 19653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19664 81.193 NaN 568140 35 0 23672 0.327 + 15288 LPAFIMITL 9 95 509.80379454164563 1017.5930361500913 2 509.80419921875 MULTI HCD FTMS 0 0 0 19663 558823.125 0.4416747061691511 10 -0.27550506591796875 1 Unmodified _LPAFIMITL_ tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1 2.0597508629832335 0.3354026079994024 2 ASKKQV 6 8 5.7556 0 0 0.56561 0 0 105.07988397842105 268.12375818424067 373.2036421626617 0 0 0 0 0 0.4247425010840047 0 0.3807196863200844 0.4247425010840047 ASKKQV 0.56561 - 143 + NaN NaN 175261.4 NaN 15725 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19665 81.197 NaN 542320 35 0 102550 0.261 + 17629 LYYDAIWHF 9 68 614.2952551878867 1226.5759574425733 2 614.2960205078125 MULTI HCD FTMS 0 0 0 19663 279272.40625 0.016329859396719017 35 -0.9643936157226562 2 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 71.13359017698441 0.008721403657255008 2 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 86.348 0 0 7.0398 7.0398 87.548 0 0 0 4.2989247940391095 4.2989247940391095 4.2989247940391095 4.2989247940391095 0 2.747425010840047 2 0 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};{I|L}YY{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{NN|[MP]|[D{I|L}]|[EV]}H{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[YQ]H{M(Oxidation (M))|F};[Y{I|L}][DP]H[HV]S{I|L}{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F} 7.0398;6.6893;5.2438;4.6521;4.6125;4.4472;3.9232;3.6965;3.5342;3.1048 +;+;-;-;-;-;-;-;-;- + 1301 + NaN NaN 186021.6 NaN 15726 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19666 81.201 NaN 362230 35 0 15544 0.262 + 11271 IYLREPLAA 9 88 523.3037745104898 NaN 0 523.3037109375 PEAK HCD FTMS 0 0 0 19663 218694.1875 0.33733846642852205 13 -0.34375 3 Unmodified _IYLREPLAA_ REV__ENSG00000211452|ENST00000361921|DIO1;REV__nc|ENSG00000211452|P49895-2|DIO1;REV__nc|ENSG00000211452|P49895-4|DIO1 7.910154910731844 0.25691533546754686 2 VT 2 -1 14.464 0 0 1.3846 0 0 176.10539246138984 665.3257511170048 841.4311435783945 0 0 0 0 0 0.5 0 0 0 VT 1.3846 - 159 + NaN NaN 137942.7 NaN 15727 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19667 81.204 NaN 529230 35 0 36639 0.261 -1 CLHMLELLQ 9 86 558.2809005475859 1114.5472481619718 2 558.7671508789062 MULTI HCD FTMS 0 0 0 19663 15337.1669921875 0.4193047499916968 -2 0.0689849853515625 4 Oxidation (M) _CLHM(Oxidation (M))LELLQ_ ENSG00000108590|ENST00000225728|MED31 36.04419817259434 0.08350412372117409 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}{I|L}GA 10 -1 + 58.003 0 0 5.2042 5.2042 83.519 0 0 0 8.519374645445623 12.19126414008825 8.519374645445623 1.9897000433601875 0 0.3807196863200844 2 1.2134679910804405 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}{I|L}GA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]{M(Oxidation (M))|F}A{I|L}GA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]{M(Oxidation (M))|F}AQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[HC]E{I|L}{I|L}GA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[HC]{I|L}GA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[HC]E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[HC]{I|L}{I|L}GA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[HC]Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}[AG]{I|L} 5.2042;5.0257;4.8456;4.6671;4.5771;4.476;4.3986;4.307;4.2975;4.1995 -;-;-;-;-;-;-;-;-;- 2913 NaN NaN 166313.8 NaN 15728 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19668 81.207 NaN 325390 35 0 102380 0.261 + 31936 VYPAGFVYI 9 42 514.7762906703402 1027.5380284074804 2 514.7764892578125 MULTI HCD FTMS 0 0 0 19663 132422.21875 0.656530126055781 1 -0.02953338623046875 5 Unmodified _VYPAGFVYI_ ACTL6A-ALG3|1|fusion;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3 67.41302359171755 0.009925318700911543 2 [YV][PA]G{M(Oxidation (M))|F}VY{I|L} 9 0 + 48.126 0 0 4.6837 4.6837 84.857 0 0 0 27.15735931149851 9.889917747712644 9.889917747712644 7.275071725447404 0 2.305462187404089 1.6989700043360187 0 0 + + [YV][PA]G{M(Oxidation (M))|F}VY{I|L};[YV][QP]{M(Oxidation (M))|F}VY{I|L} 4.6837;3.9757 +;- + 61 + NaN NaN 139813.2 NaN 15729 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19669 81.211 NaN 104020 35 0 5226.4 0.261 + -1 YLPCRPGQCDR 11 48 474.5524824495131 1420.6356179487393 3 474.5525207519531 MULTI HCD FTMS 0 0 0 19663 52179.44921875 0.42022324973291575 1 -0.02953338623046875 6 2 Carbamidomethyl (C) _YLPC(Carbamidomethyl (C))RPGQC(Carbamidomethyl (C))DR_ REV__ENSG00000163638|ENST00000498707|ADAMTS9;REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF;REV__nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;REV__nc|ENSG00000163638|Q9P2N4-4|ADAMTS9 2.2527281973983926 0.4090409658946738 2 {I|L}YD 3 -1 46.198 0 0 3.2519 0 0 0 1026.437162773354 1026.437162773354 39.20818753952375 0 0 0 0 0 2 0 0 {I|L}YD 3.2519 - 6 + NaN NaN 98469.5 NaN 15730 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19670 81.214 NaN 146690 35 0 9740 0.261 + 28671 TSESSSPF 8 52 421.18135196583046 840.3481509984609 2 421.1791076660156 MULTI HCD FTMS 0 0 0 19663 65562.2890625 0.5310435234977707 1 -0.02953338623046875 7 Unmodified _TSESSSPF_ REV__ENSG00000164626|ENST00000359534|KCNK5 24.67388899826682 0.4122521268485776 2 {[MG]|[TS]}{M(Oxidation (M))|F}[WD]W 6 -1 + 31.968 0 0 3.8041 3.8041 82.314 0 0 0 11.170912423450403 2.7152998730866074 2.7152998730866074 3.679767852945943 0 0.8494850021680094 0 0.3807196863200844 0 {[MG]|[TS]}{M(Oxidation (M))|F}[WD]W;{[MG]|[TS]}{M(Oxidation (M))|F}C[TP]W;AA{[{M(Oxidation (M))|F}D]|MM}TMW;{[ET]|[MV]}S{[MG]|[TS]}MW;Q[{M(Oxidation (M))|F}E]TS{[ET]|[MV]};{[MG]|[TS]}{[ES]|[DT]|[{I|L}C]}TS{[ET]|[MV]};{[MG]|[TS]}[WM]M[VS];{[MG]|[TS]}{M(Oxidation (M))|F}C[PG]{[ET]|[MV]};Q[{M(Oxidation (M))|F}E][RD]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]ST{[CP]|[EA]}W 3.8041;3.3662;2.819;2.1648;2.041;1.9788;1.9614;1.9568;1.8605;1.83 -;-;-;-;-;-;-;-;-;- 213 + NaN NaN 123288.9 NaN 15731 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19671 81.217 NaN 390900 35 0 74305 0.261 + 26630 SWPDWALPRL 10 56 620.827283562001 1239.6400141908018 2 620.8281860351562 MULTI HCD FTMS 0 0 0 19663 98292.28125 0.061162614169715315 -10 0.29137420654296875 8 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 43.77239144664712 0.11267038882370725 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}[DP]WA{I|L} 7 3 51.215 0 0 4.1314 0 0 0 381.22514820142874 381.22514820142874 36.73393743112328 0 0 0 0 2 1.6989700043360187 0 0 + {[WS]|[C(Carbamidomethyl (C)){I|L}]}[DP]WA{I|L} 4.1314 + + 127 + NaN NaN 150128.9 NaN 15732 3937 19663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19673 81.222 NaN 608430 35 0 76570 0.327 + 13588 KYPENFFLL 9 71 585.8131605635726 1169.6117681939452 2 585.8138427734375 MULTI HCD FTMS 0 0 0 19672 374079.15625 0.0019015473869137946 213 -5.154640197753906 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 66.348 0 0 5.6727 5.6727 88.02 0 0 0 3.6574248437336365 43.696662315049934 3.6574248437336365 9.208187539523749 0 2.274227503252014 0 0 0.7742275032520141 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};KY[EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};KY[EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][NS][PS]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N[{M(Oxidation (M))|F}E]K{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][YT]G[NP]{M(Oxidation (M))|F}{I|L}{I|L} 5.6727;4.8854;4.8143;4.6476;4.027;3.8603;3.6868;3.6443;3.3917;3.2812 +;-;+;-;-;-;-;-;-;- + 533 NaN NaN 185927.6 NaN 15733 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19674 81.227 NaN 728520 35 0 90048 0.261 -1 0 86 566.2980512400009 1130.5815495468016 2 566.298095703125 MULTI HCD FTMS 0 0 0 19672 291798.65625 0.8167957013758911 32 -0.8791351318359375 2 NaN NaN 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 49.652 0 0 4.3917 0 0 291.15794570136876 0 291.15794570136876 0 15.848271659217453 0 0 0 2.579689690656103 0 0.6643943297944485 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.3917 - 1085 NaN NaN 209983.4 NaN 15734 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19675 81.23 NaN 618280 35 0 71923 0.261 + 23786 RRNLMECTM 9 98 577.2670474681886 1152.519542003177 2 577.2674560546875 MULTI HCD FTMS 0 0 0 19672 262735.6875 0.40522328884566955 -4 0.118072509765625 3 Unmodified _RRNLMECTM_ REV__ENSG00000151617|ENST00000651419|EDNRA;REV__nc|ENSG00000151617|P25101-4|EDNRA;REV__nc|ENSG00000151617|P25101-5|EDNRA 20.453626601364224 0.18364154288633264 2 {I|L}PVD 4 -1 47.305 0 0 4.1045 0 0 0 725.2653902643186 725.2653902643186 25.22644583644839 0 0 0 0 1.0189301784845295 1.0969100130080565 0.5 0 {I|L}PVD 4.1045 - 289 + NaN NaN 186892.9 NaN 15735 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19676 81.233 NaN 443670 35 0 141850 0.261 + 31937 VYPAGFVYI 9 43 514.7762906703402 1027.5380284074804 2 514.7763671875 MULTI HCD FTMS 0 0 0 19672 184096.796875 0.9127251785970341 2 -0.0557403564453125 4 Unmodified _VYPAGFVYI_ ACTL6A-ALG3|1|fusion;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3 56.04830969593885 0.023109620888794903 2 [YV]W[VS]VY{I|L} 8 4 + 65.891 0 0 6.4125 6.4125 86.761 0 0 0 12.129843661361406 58.90092514408778 12.129843661361406 5.295000083553205 0 1.3494850021680094 1.6989700043360187 0 0 [YV]W[VS]VY{I|L};[YV][PA]G{M(Oxidation (M))|F}VY{I|L};[YV][QP]{M(Oxidation (M))|F}VY{I|L};[YV]W[VS]{I|L}[YV];[YV][PA]G{M(Oxidation (M))|F}{I|L}[YV];[YV][QP]{M(Oxidation (M))|F}{I|L}[YV] 6.4125;5.8972;5.4393;4.0029;3.4876;3.0297 -;+;-;-;-;- + 126 NaN NaN 171181.6 NaN 15736 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19677 81.237 NaN 478820 35 0 60317 0.261 + 1023 AYGASFLSF 9 55 481.73460884344104 961.4546647536821 2 481.73480224609375 MULTI HCD FTMS 0 0 0 19672 123936.6640625 0.1599196819552688 -4 0.118072509765625 5 Unmodified _AYGASFLSF_ ENSG00000159596|ENST00000372025|TMEM69 139.54400939418784 2.61670173137287E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9 0 + 102.66 0 0 10.678 10.678 90.047 0 0 0 19.990823894397565 75.97804375441612 19.990823894397565 0.45757490560674796 0 2.805462187404089 1.5228787452803376 1.555462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YQ]AS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAT[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QT[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}{[QS]|[NT]}S{M(Oxidation (M))|F};[YQ]AT[{M(Oxidation (M))|F}V]S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QS]|[NT]}S{M(Oxidation (M))|F} 10.678;10.63;8.5202;6.5391;6.4915;5.2404;4.3817;3.1305 +;-;-;-;-;-;-;- + 351 NaN NaN 176432.8 NaN 15737 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19678 81.24 NaN 210530 35 0 16439 0.261 + 20529 PDSLKPVSL 9 63 478.27618718912095 954.5378214450419 2 479.277587890625 MULTI HCD FTMS 0 0 0 19672 87740.890625 0.729784315039114 4 -0.09810638427734375 6 Unmodified _PDSLKPVSL_ ENSG00000165810|ENST00000327705|BTNL9;nc|ENSG00000165810|Q6UXG8-2|BTNL9;nc|ENSG00000165810|Q6UXG8-3|BTNL9 10.073929032068715 0.27331982688540024 2 T{M(Oxidation (M))|F} 2 9 18.94 0 0 1.9842 0 0 688.4112172964076 0 688.4112172964076 0 5.127881306118452 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 1.9842 - 89 + NaN NaN 118697 NaN 15738 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19679 81.243 NaN 173960 35 0 8263.3 0.261 + 7246 FSVYCQCRR 9 71 581.2698191844462 1160.5250854356923 2 581.2698974609375 MULTI HCD FTMS 0 0 0 19672 48378.41796875 0.5355528985444576 2 -0.0557403564453125 7 Unmodified _FSVYCQCRR_ ENSG00000123066|ENST00000281928|MED13L;ENST00000548694.1_1_12:116413318-116418680:-|nuORF 19.256988751693697 0.19398022840297344 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEV{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 10 7 + 78.621 0 0 6.7746 6.7746 93.03 0 0 0 25.764837301042718 66.91626544939237 25.764837301042718 23.712600430434705 0 1.9247425010840047 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEV{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{[YC]|[HE]}EVV{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVE{[YC]|[HE]}V{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VVEV{[YC]|[HE]}{[ES]|[DT]|[{I|L}C]} 6.7746;4.7313;4.4741;4.3027 -;-;-;- 175 NaN NaN 119132.6 NaN 15739 3938 19672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19681 81.248 NaN 3416000 35 0 391160 0.327 + 17900 MILELDPTF 9 95 547.7755959212911 1093.5366389093822 2 547.7760620117188 MULTI HCD FTMS 0 0 0 19680 1851682.5 0.8365670968324158 -5 0.14423370361328125 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 110.93 0 0 10.144 10.144 98.121 0 0 0 22.433991468471945 45.88406727688741 22.433991468471945 32.774334638038454 0 2.9604093769761874 1.6989700043360187 1.5743923658886187 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}YP 10.144;7.1472;7.0748;7.0382;6.9658;6.7121;6.6397;6.0461;4.4412;4.3688 +;-;-;-;-;-;-;-;-;- + 2898 NaN NaN 631855.2 NaN 15740 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19682 81.253 NaN 929290 35 0 477290 0.262 + 21008 PLNVDLVL 8 53 441.76845900555986 881.5223650779197 2 441.7685241699219 MULTI HCD FTMS 0 0 0 19680 721272.9375 0.1489190600837554 6 -0.1673583984375 2 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 32.30548876998284 0.3297748069446609 2 D{I|L}V{I|L} 4 -1 54.68 0 0 6.203 0 0 423.24716599193084 0 423.24716599193084 0 49.10728139283883 0 0 0 1.8494850021680094 0 0.4247425010840047 0 D{I|L}V{I|L} 6.203 + + 57 NaN NaN 233990 NaN 15741 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19683 81.256 NaN 494110 35 0 113570 0.261 + 34330 YPEDFAIDL 9 55 541.755735889454 1081.4969188457078 2 541.7559814453125 MULTI HCD FTMS 0 0 0 19680 205711.453125 0.42602697791965516 3 -0.0719451904296875 3 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 30.636539890814138 0.10832830463492794 2 A{I|L}D{I|L} 4 5 46.938 0 0 4.3401 0 0 651.254501763162 0 651.254501763162 0 16.4363034371533 0 0 0 1.5 0 0 0 + A{I|L}D{I|L} 4.3401 + + 32 NaN NaN 161047.4 NaN 15742 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19684 81.26 NaN 579480 35 0 88536 0.261 -1 VHQLEAMTRM 10 86 616.2994505061508 1230.5843480791016 2 617.7876586914062 MULTI HCD FTMS 0 0 0 19680 9591.15234375 0.02785644210834716 47 -1.281707763671875 4 Oxidation (M) _VHQLEAMTRM(Oxidation (M))_ ENST00000357702.9_2_2:128699126-128699384:-|nuORF 7.608950283845883 0.4350283211712914 2 [WY]GWH{M(Oxidation (M))|F}PE 8 -1 41.068 0 0 3.3373 0 0 0 125.0964871816192 125.0964871816192 20.389180660303694 0 0 0 0 0 2 0 0 [WY]GWH{M(Oxidation (M))|F}PE 3.3373 - 1160 NaN NaN 187995.6 NaN 15743 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19685 81.263 NaN 126110 35 0 9805.2 0.264 + 19160 NHFAAGGF 8 51 410.69094969326017 819.3673464533204 2 410.6909484863281 MULTI HCD FTMS 0 0 0 19680 97099.6015625 0.9009216928913458 1 -0.02957916259765625 5 Unmodified _NHFAAGGF_ ENSG00000085276|ENST00000651503|MECOM;MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112|MECOM 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 16.99 0 0 2.0735 0 0 654.288349726561 0 654.288349726561 0 3.4948500216800937 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 2.0735 + + 6 + NaN NaN 107474.6 NaN 15744 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19686 81.266 NaN 219040 35 0 52872 0.261 + -1 YAGAVKCSE 9 53 492.7257122783955 983.4368716235911 2 492.72601318359375 MULTI HCD FTMS 0 0 0 19680 97490.546875 0.3646910574342408 -3 0.08850860595703125 6 Carbamidomethyl (C) _YAGAVKC(Carbamidomethyl (C))SE_ REV__ENST00000504897.2_1_5:140053125-140053497:+|nuORF 19.256988751693697 0.19398022840297344 2 AYGAS{M(Oxidation (M))|F}{I|L} 7 -1 73.307 0 0 7.4542 0 0 0 271.06977258853755 271.06977258853755 43.84343632307683 0 0 0 0 1.1549471895720984 2 0.4247425010840047 0 AYGAS{M(Oxidation (M))|F}{I|L} 7.4542 - 83 + NaN NaN 120088.2 NaN 15745 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19687 81.27 NaN 181210 35 0 19742 0.261 + 11568 IYSTAFDYF 9 54 563.7583821028218 1125.5022112724434 2 563.7588500976562 MULTI HCD FTMS 0 0 0 19680 51164.94140625 0.021863703446501754 30 -0.8134689331054688 7 Unmodified _IYSTAFDYF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1 48.345845343767074 0.03388484103555672 2 {[{M(Oxidation (M))|F}C]|[YS]}V[VS]{M(Oxidation (M))|F}DY{M(Oxidation (M))|F} 9 4 + 44.389 0 0 3.944 3.944 82.152 0 0 0 2.420299789533402 25.972959308331337 2.420299789533402 2.998037644757048 0 1.305462187404089 0 0.3252574989159953 0 {[{M(Oxidation (M))|F}C]|[YS]}V[VS]{M(Oxidation (M))|F}DY{M(Oxidation (M))|F};[Y{I|L}][VS][YG]DY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}A[{I|L}T]{M(Oxidation (M))|F}DY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}[YG]DY{M(Oxidation (M))|F};M[DC][WK]{I|L}V[MT];M[DC]{I|L}[WK]V[MT];{[{M(Oxidation (M))|F}C]|[YS]}A[WR]AAC(Carbamidomethyl (C))AA 3.944;3.6776;3.6765;3.5666;0.71809;0.71809;0.010958 -;-;-;-;-;-;- 449 NaN NaN 115034 NaN 15746 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19688 81.273 NaN 349030 35 0 22016 0.261 -1 MLLETGLER 9 80 539.2846705582052 NaN 0 539.2703857421875 PEAK HCD FTMS 0 0 0 19680 15175.833984375 1 0 0 8 Oxidation (M) _M(Oxidation (M))LLETGLER_ ENSG00000107187|ENST00000371748|LHX3 12.531546534597751 0.23452071659215576 2 Y{I|L}EAE{I|L} 6 -1 23.492 0 0 2.1822 0 0 98.0819010755916 257.0964603428654 355.178361418457 0 0 0 0 0 0 0 0.7302046884880937 0 Y{I|L}EAE{I|L} 2.1822 - 503 + NaN NaN 150916.9 NaN 15747 3939 19680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19690 81.278 NaN 156950 35 0 25751 0.327 + 28213 TLDPEPQH 8 53 468.7241690632123 935.4337851932246 2 468.72381591796875 MULTI HCD FTMS 0 0 0 19689 60791.3671875 0.1142118847954151 7 -0.1902313232421875 1 Unmodified _TLDPEPQH_ ENSG00000151065|ENST00000280665|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;nc|ENSG00000151065|Q8IZD4-2|DCP1B 3.944395688203298 0.5361403129012058 2 T{I|L} 2 6 20.969 0 0 2.2416 0 0 0 718.2744029250565 718.2744029250565 15.484550065040281 0 0 0 0 0 0 0 0 + T{I|L} 2.2416 + + 15 + NaN NaN 118118.5 NaN 15748 3940 19689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19691 81.282 NaN 175500 35 0 13507 0.261 + 17099 LYLEFLQKF 9 69 600.8369655514308 1199.6593781696615 2 600.8367919921875 MULTI HCD FTMS 0 0 0 19689 49676.32421875 0.09271745150690422 7 -0.1902313232421875 2 Unmodified _LYLEFLQKF_ ENSG00000116039|ENST00000234396|ATP6V1B1;ENSG00000147416|ENST00000276390|ATP6V1B2 72.96794272382148 0.008127836904478181 2 [Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F} 9 0 + 92.164 0 0 7.6825 7.6825 93.058 0 0 0 16.811544221876673 16.478174818886373 16.478174818886373 12.26280941356464 0 2.2059771852360797 2 0.6237125054200234 0.3054621874040891 + + [Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}QK{M(Oxidation (M))|F};[Y{I|L}]{I|L}E{M(Oxidation (M))|F}{I|L}[AG]K{M(Oxidation (M))|F};[Y{I|L}]{I|L}Q[Q{I|L}][Y{I|L}]{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}[Q{I|L}][Y{I|L}]{M(Oxidation (M))|F};[RH]Q{I|L}M[Q{I|L}]K{M(Oxidation (M))|F};[RH][AG]{I|L}M[Q{I|L}]K{M(Oxidation (M))|F} 7.6825;6.6603;3.5295;3.0086;1.7002;0.93262 +;-;-;-;-;- + 263 NaN NaN 119886.6 NaN 15749 3940 19689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19692 81.286 NaN 116830 35 0 20565 0.261 + 8688 HFVCLMIII 9 41 544.8032228596953 1087.5918927861906 2 544.8035888671875 MULTI HCD FTMS 0 0 0 19689 27237.923828125 0.3724468654016091 4 -0.10820770263671875 3 Unmodified _HFVCLMIII_ ENSG00000174130|ENST00000508254|TLR6;nc|ENSG00000174130|Q9Y2C9-2|TLR6 9.347437153973935 0.2795965555214564 2 Q{I|L}{I|L}{I|L} 4 6 30.974 0 0 2.848 0 0 602.2662220685562 0 602.2662220685562 0 30.974184576165342 0 0 0 0.3807196863200844 0 0 0 Q{I|L}{I|L}{I|L} 2.848 - 9 NaN NaN 104513.3 NaN 15750 3940 19689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19693 81.289 NaN 132790 35 0 13512 0.261 -1 KFLTHFILM 9 49 583.3269785722629 NaN 0 583.3406372070312 PEAK HCD FTMS 0 0 0 19689 28762.853515625 0.6524134757806258 -2 0.0557403564453125 4 Oxidation (M) _KFLTHFILM(Oxidation (M))_ ENSG00000165355|ENST00000298097|FBXO33 8.155526934196011 0.2557262968844962 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 11.682 0 0 1.0031 0 0 131.09511198642628 623.3295382135374 754.4246501999637 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 1.0031 - 12 + NaN NaN 103702.7 NaN 15751 3940 19689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19694 81.292 NaN 372090 35 0 25010 0.261 + -1 MLAEEIRSL 9 87 539.2846705582052 NaN 0 539.26904296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _M(Oxidation (M))LAEEIRSL_ REV__ENSG00000148843|ENST00000369797|PDCD11 12.531546534597751 0.23452071659215576 2 Y{I|L}E{I|L}DP 6 -1 16.776 0 0 1.5583 0 0 98.09282636856035 245.0930117242797 343.1858380928401 0 0 0 0 0 0 0 0.3807196863200844 0 Y{I|L}E{I|L}DP 1.5583 - 330 + NaN NaN 147899.9 NaN 15752 3940 19689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19696 81.297 NaN 1257500 35 0 42838 0.327 + 14846 LKEQKERA 8 107 501.2906072263501 1000.5666615195003 2 501.2907409667969 MULTI HCD FTMS 0 0 0 19695 1050062.875 0.5940167147708898 12 -0.30770111083984375 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 2 Q 1 7 11.281 0 0 1.1275 0 0 458.2734140605813 411.2230916818468 869.4965057424281 0 0 0 0 0 0.7302046884880937 0 0 0 + Q 1.1275 + + 185 + NaN NaN 283696.1 NaN 15753 3941 19695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19697 81.302 NaN 431240 35 0 45969 0.261 + 23157 RFILNLPTF 9 85 560.8296409146644 1119.6447288961288 2 560.829345703125 MULTI HCD FTMS 0 0 0 19695 87504.0859375 0.019614580492854406 39 -1.0722885131835938 2 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 34.40172386719151 0.0910440009062557 2 [YV]T{I|L} 4 8 45.049 0 0 4.0235 0 0 0 640.3602819535703 640.3602819535703 23.634993639681312 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 [YV]T{I|L} 4.0235 - 1085 NaN NaN 159131.7 NaN 15754 3941 19695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19698 81.305 NaN 436620 35 0 57135 0.261 + -1 LSLMILLPF 9 74 531.8171257624691 1061.6196985917381 2 531.8173217773438 MULTI HCD FTMS 0 0 0 19695 65558.6328125 0.16873858856081142 14 -0.37018585205078125 3 Oxidation (M) _LSLM(Oxidation (M))ILLPF_ REV__ENSG00000167895|ENST00000318430|TMC8;REV__ENST00000591144.1_1_17:76134504-76137190:+|nuORF;REV__nc|ENSG00000167895|Q8IU68-2|TMC8 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F} 1 -1 18.411 0 0 1.7343 0 0 896.5413732516976 0 896.5413732516976 0 1.9525559917570945 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.7343 + + 76 + NaN NaN 174721.7 NaN 15755 3941 19695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19699 81.309 NaN 163320 35 0 17165 0.261 + 29144 TYIKFINLF 9 56 579.831606378513 1157.648659823826 2 579.8313598632812 MULTI HCD FTMS 0 0 0 19695 34545.03125 0.044259612275513116 33 -0.918670654296875 4 Unmodified _TYIKFINLF_ ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;nc|ENSG00000196961|O95782|AP2A1 35.61225514009592 0.08548698421724198 2 [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 62.616 0 0 5.4089 5.4089 85.692 0 0 0 13.028871982441359 13.028871982441359 13.028871982441359 6.708187539523749 0 1.5994850021680094 2 0 0 + + [YT]{I|L}K{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]TK{M(Oxidation (M))|F}{I|L}GG{I|L}{M(Oxidation (M))|F};[YT]{I|L}K{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[YT]K{I|L}{M(Oxidation (M))|F}{I|L}[VG]A{M(Oxidation (M))|F};[RH][{I|L}A][R{M(Oxidation (M))|F}]{I|L}[{M(Oxidation (M))|F}V] 5.4089;4.8294;4.6134;4.034;2.9893;2.1939;1.9515;1.5158;0.20102 +;-;-;-;-;-;-;-;- + 179 NaN NaN 119202.4 NaN 15756 3941 19695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19700 81.312 NaN 85209 35 0 7193.8 0.262 + 460 ALPFVLLMA 9 45 487.790896412104 973.5672398910081 2 487.7906494140625 MULTI HCD FTMS 0 0 0 19695 43285.07421875 0.5385079341258874 5 -0.14450836181640625 5 Unmodified _ALPFVLLMA_ ENSG00000147873|ENST00000610521|IFNA5 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 8 4.6041 0 0 0.47291 0 0 281.1768723146393 542.2979220025999 823.4747943172392 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.47291 + + 5 + NaN NaN 108811.7 NaN 15757 3941 19695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19701 81.315 NaN 123700 35 0 16284 0.261 + -1 CRVKFPPF 8 49 525.7804185521196 1049.5462841710391 2 525.781005859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _C(Carbamidomethyl (C))RVKFPPF_ REV__ENSG00000135111|ENST00000349155|TBX3;REV__ENST00000552054.1_1_12:115118611-115121104:-|nuORF;REV__nc|ENSG00000135111|O15119-3|TBX3;REV__nc|ENSG00000135111|O15119|TBX3 10.183394434864962 0.5188676124868831 2 P{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.3309 0 0 787.4145530692798 0 787.4145530692798 0 8.89075625191822 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 2.3309 + + 8 + NaN NaN 110031.7 NaN 15758 3941 19695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19703 81.32 NaN 931990 35 0 207320 0.327 + 21600 PYNPLWAQL 9 80 551.2897008140378 1100.5648486948755 2 551.2901611328125 MULTI HCD FTMS 0 0 0 19702 361698.9375 0.5694653423842692 3 -0.0954132080078125 1 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 58.678817012210395 0.019429721296335044 2 WAQ{I|L} 4 5 46.938 0 0 4.2649 0 0 584.2955407530841 0 584.2955407530841 0 32.33410649039925 0 0 0 1.5 0 0 0 + WAQ{I|L} 4.2649 + + 546 NaN NaN 236414.2 NaN 15759 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19704 81.325 NaN 483200 35 0 71423 0.261 + 12983 KYILVSLIL 9 67 531.3519967121779 1060.6894404911557 2 531.3521728515625 MULTI HCD FTMS 0 0 0 19702 200083.703125 0.9787327793118856 1 -0.0363311767578125 2 Unmodified _KYILVSLIL_ ENSG00000141030|ENST00000268717|COPS3;nc|ENSG00000141030|Q9UNS2-2|COPS3 45.69961567697781 0.039180348357221985 2 S{I|L}{I|L}{I|L} 4 5 43.052 0 0 4.0589 0 0 616.3946221413585 0 616.3946221413585 0 26.06258021432572 0 0 0 1.2887254899964358 0 0.4247425010840047 0 + S{I|L}{I|L}{I|L} 4.0589 + + 67 NaN NaN 160871.3 NaN 15760 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19705 81.328 NaN 237380 35 0 47037 0.261 -1 YQCPYCEK 8 48 574.231193575262 1146.4478342173238 2 574.2313842773438 MULTI HCD FTMS 0 0 0 19702 155216.8125 0.8684239168016075 -4 0.09810638427734375 3 2 Carbamidomethyl (C) _YQC(Carbamidomethyl (C))PYC(Carbamidomethyl (C))EK_ ENSG00000138738|ENST00000264808|PRDM5;ENST00000505484.5_1_4:121652936-121737791:-|nuORF;nc|ENSG00000138738|Q9NQX1-2|PRDM5 2.0597508629832335 0.5389364538378849 2 D 1 -1 16.237 0 0 1.4163 0 0 363.1791369991524 665.217571335786 1028.3967083349385 0 0 0 0 0 0.9247425010840047 0 0 0 D 1.4163 - 21 + NaN NaN 124350.1 NaN 15761 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19706 81.332 NaN 214160 35 0 41105 0.261 -1 0 48 598.3021471797576 1194.5897414263152 2 598.3025512695312 MULTI HCD FTMS 0 0 0 19702 92939.4140625 0.030963933091462868 64 -1.779754638671875 4 NaN NaN 2 [Y{I|L}]{[TV]|[{I|L}S]}T[WH]Q 8 -1 27.937 0 0 2.3386 0 0 0 163.06139604961518 163.06139604961518 16.699784405891762 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{[TV]|[{I|L}S]}T[WH]Q 2.3386 - 54 NaN NaN 125900.7 NaN 15762 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19707 81.335 NaN 87553 35 0 12919 0.263 -1 0 39 452.7595927624666 903.5046325917332 2 452.7596435546875 MULTI HCD FTMS 0 0 0 19702 62448.1953125 0.08748852730628069 9 -0.242279052734375 5 NaN NaN 2 {I|L}P 2 -1 20.969 0 0 2.3209 0 0 0 690.3469942682249 690.3469942682249 20.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 2.3209 - 3 + NaN NaN 119010.4 NaN 15763 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19708 81.338 NaN 190970 35 0 9145.1 0.261 + 22002 QFIQFKEAK 9 82 569.8163613063073 1137.6181696794145 2 570.80615234375 MULTI HCD FTMS 0 0 0 19702 11101.927734375 0.24842755860822557 -5 0.1276397705078125 6 Unmodified _QFIQFKEAK_ REV__ENSG00000089177|ENST00000354981|KIF16B;REV__nc|ENSG00000089177|Q96L93-2|KIF16B;REV__nc|ENSG00000089177|Q96L93-4|KIF16B;REV__nc|ENSG00000089177|Q96L93-6|KIF16B 8.745405648335112 0.2847203663274469 2 [YN]{I|L} 3 -1 22.051 0 0 1.9384 0 0 0 744.4042163925582 744.4042163925582 4.973024840566467 0 0 0 0 0 2 0 0 [YN]{I|L} 1.9384 - 210 NaN NaN 120882.3 NaN 15764 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19709 81.342 NaN 159350 35 0 14358 0.264 + 25737 SKTSGKAK 8 70 403.7396821361156 805.4648113390313 2 403.73968505859375 MULTI HCD FTMS 0 0 0 19702 214814.796875 0.5872278120556222 6 -0.1773223876953125 7 Unmodified _SKTSGKAK_ ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-4|ITIH5 0 0.5419923896992614 2 Y{M(Oxidation (M))|F} 2 8 13.979 0 0 1.7356 0 0 477.3134269169594 0 477.3134269169594 0 10 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 1.7356 - 31 + NaN NaN 111375.3 NaN 15765 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19710 81.345 NaN 154760 35 0 16900 0.261 -1 FYYFMGLEC 9 53 623.2516501003054 NaN 0 623.25146484375 PEAK HCD FTMS 0 0 0 19702 35487.08203125 0.7060849480374645 1 -0.0363311767578125 8 Carbamidomethyl (C),Oxidation (M) _FYYFM(Oxidation (M))GLEC(Carbamidomethyl (C))_ ENST00000264033.5_1_11:119170671-119170704:+|nuORF 12.531546534597751 0.23452071659215576 2 P{I|L} 2 -1 5.9691 0 0 0.47964 0 0 757.2383943394794 274.08246790103755 1031.320862240517 0 0 0 0 0 0 0 0 0 P{I|L} 0.47964 - 45 + NaN NaN 138625.4 NaN 15766 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19711 81.348 NaN 165690 35 0 17720 0.264 + 28672 TSESSSPF 8 64 421.18135196583046 840.3481509984609 2 421.68255615234375 MULTI HCD FTMS 0 0 0 19702 27493.701171875 0.2453661880023446 7 -0.18689727783203125 9 Unmodified _TSESSSPF_ REV__ENSG00000164626|ENST00000359534|KCNK5 18.13498045792455 0.4603629008820478 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}MT{M(Oxidation (M))|F} 5 -1 20.289 0 0 2.4144 0 0 0 185.059235268535 185.059235268535 8.299405786435166 0 0 0 0 0.6643943297944485 1.2218487496163564 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}MT{M(Oxidation (M))|F} 2.4144 - 60 NaN NaN 128306 NaN 15767 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19712 81.352 NaN 118490 35 0 23789 0.261 + 15326 LPATIGDLI 9 57 456.77355398824614 911.5325550432923 2 456.7736511230469 MULTI HCD FTMS 0 0 0 19702 51213.75390625 0.6948396550901758 -1 0.022857666015625 10 Unmodified _LPATIGDLI_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 14.838274106304384 0.23215694253501695 2 {I|L}[DG]{I|L}{I|L} 5 4 25.956 0 0 2.8475 0 0 382.22191054511876 0 382.22191054511876 0 15.24227503252014 0 0 0 0.6747425010840047 0 0 0 + {I|L}[DG]{I|L}{I|L} 2.8475 + + 27 NaN NaN 104319.3 NaN 15768 3942 19702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19714 81.357 NaN 699150 35 0 33047 0.327 -1 IMGLILPVF 9 92 509.80379454164563 1017.5930361500913 2 509.80389404296875 MULTI HCD FTMS 0 0 0 19713 480186.09375 0.3795226832524937 16 -0.42661285400390625 1 Oxidation (M) _IM(Oxidation (M))GLILPVF_ ENST00000504531.2_1_8:76136172-76136379:-|nuORF 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.2007 0 0 852.5142530463788 0 852.5142530463788 0 2.1522307679937214 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2007 + + 130 + NaN NaN 200524.2 NaN 15769 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19715 81.361 NaN 623020 35 0 42124 0.261 + 21971 QEQDLLEQL 9 86 558.2809005475859 1114.5472481619718 2 558.7670288085938 MULTI HCD FTMS 0 0 0 19713 14077.3203125 0.38486164212677476 3 -0.08531951904296875 2 Unmodified _QEQDLLEQL_ REV__ENSG00000278685|ENST00000615129|IQCA1L 20.41453444215458 0.18397929046831515 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}Q{I|L} 9 -1 + 60.032 0 0 5.3863 5.3863 85.286 0 0 0 7.269987279362624 7.269987279362624 7.269987279362624 5.941876774005252 0 0 2 1.0189301784845295 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[HC]Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[HC]E{I|L}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[HC]{I|L}Q{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}E{I|L}DYG{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HC]{I|L}E{I|L}[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]{M(Oxidation (M))|F}AQ{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}[HC][AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[HC]E{I|L}[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[HC]{I|L}[AG]{I|L} 5.3863;4.8531;4.8421;4.8421;4.734;4.5601;4.4685;4.027;4.0159;4.0159 -;-;-;-;-;-;-;-;-;- 1648 NaN NaN 182501.1 NaN 15770 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19716 81.365 NaN 589480 35 0 107930 0.261 + 17630 LYYDAIWHF 9 69 614.2952551878867 1226.5759574425733 2 614.295654296875 MULTI HCD FTMS 0 0 0 19713 238269.390625 0.013932295351675728 41 -1.10784912109375 3 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 104.79918948944588 0.003791450360204016 2 {I|L}YYDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 88.65 0 0 7.2275 7.2275 88.237 0 0 0 5.262940478034892 5.262940478034892 5.262940478034892 5.262940478034892 0 2.628144697160131 2 0.3494850021680094 0 + + {I|L}YYDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}Y{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YDA[WH]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[DP]DA{I|L}WH{M(Oxidation (M))|F};{I|L}YY{[MG]|[TS]}H[KG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}Y{I|L}A{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]Y{[HG]|PP}[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[DA]|[EG]}HWY{I|L}{M(Oxidation (M))|F} 7.2275;6.7984;5.2474;4.9079;4.754;3.5186;3.3602;3.36;3.2066;3.0861 +;+;-;-;-;-;-;-;-;- + 1236 + NaN NaN 194102 NaN 15771 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19717 81.368 NaN 289820 35 0 13598 0.262 + 11272 IYLREPLAA 9 93 523.3037745104898 NaN 0 523.303466796875 PEAK HCD FTMS 0 0 0 19713 186558.84375 0.287769304565094 19 -0.5151214599609375 4 Unmodified _IYLREPLAA_ REV__ENSG00000211452|ENST00000361921|DIO1;REV__nc|ENSG00000211452|P49895-2|DIO1;REV__nc|ENSG00000211452|P49895-4|DIO1 12.531546534597751 0.23452071659215576 2 R 1 -1 9.6041 0 0 0.91941 0 0 220.12976042287158 665.3253878229124 885.4551482457839 0 0 0 0 0 0.2614393726401688 0 0 0 R 0.91941 + + 156 + NaN NaN 147774.5 NaN 15772 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19718 81.371 NaN 249570 35 0 15138 0.261 + 27672 TALNLFFKL 9 76 533.8184603104121 1065.622367687624 2 533.8184814453125 MULTI HCD FTMS 0 0 0 19713 42422.890625 0.009369083298107804 41 -1.10784912109375 5 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 71.70789743142352 0.008535567138151097 2 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 68.872 0 0 6.4631 6.4631 92.095 0 0 0 7.389917747712644 33.16569691289537 7.389917747712644 19.124628150806373 0 2.392159058960253 0 0.3252574989159953 0.9916440611282626 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}N{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}[{I|L}A]{M(Oxidation (M))|F}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS][{I|L}A]{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}[K{I|L}]{M(Oxidation (M))|F};[TA]{I|L}[{I|L}P]{[RE]|[WV]}GP{I|L} 6.4631;4.6684;3.1061;2.9974;2.4868;2.242;0.099985 +;-;-;-;-;-;- + 686 NaN NaN 139408.8 NaN 15773 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19719 81.375 NaN 332920 35 0 21585 0.261 + 23187 RFLDFITNI 9 79 569.8163613063073 1137.6181696794145 2 569.816650390625 MULTI HCD FTMS 0 0 0 19713 55676.640625 0.38972481089902355 -3 0.07869720458984375 6 Unmodified _RFLDFITNI_ ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C 30.7034409873982 0.10802119112323902 2 {M(Oxidation (M))|F}{I|L}TN{I|L} 5 4 46.058 0 0 4.0486 0 0 531.2798939435562 0 531.2798939435562 0 29.06804392152253 0 0 0 1.3807196863200843 0 0.3807196863200844 0 + {M(Oxidation (M))|F}{I|L}TN{I|L} 4.0486 + + 118 NaN NaN 140440.7 NaN 15774 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19720 81.378 NaN 428480 35 0 38886 0.261 + 14420 LELYEELF 8 76 528.2694627961397 1054.5243726590793 2 528.7716674804688 MULTI HCD FTMS 0 0 0 19713 89181.953125 0.8267864471017146 -4 0.1082763671875 7 Unmodified _LELYEELF_ REV__tr|U7SSR5|U7SSR5_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01545PE=4SV=1 13.50788311687929 0.4944073034352369 2 MQ{I|L}YYPA 7 -1 35.974 0 0 3.4114 0 0 0 185.09308801822502 185.09308801822502 16.16660094933607 0 0 0 0 0.4247425010840047 0 0 0 MQ{I|L}YYPA 3.4114 - 287 + NaN NaN 153962.8 NaN 15775 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19721 81.381 NaN 126910 35 0 9434.9 0.261 -1 NMKCNHFLPE 10 51 624.7772453497097 1247.5399377662193 2 624.7770385742188 MULTI HCD FTMS 0 0 0 19713 52523.35546875 0.7729327007147713 1 -0.029510498046875 8 Oxidation (M) _NM(Oxidation (M))KCNHFLPE_ ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000528777.3_1_12:85556565-85656835:+|nuORF;LRRIQ1|p.R1648I|1|0.16|ENSG00000133640|chr12:85229637-85229637|G/T|missense_variant;nc|ENSG00000133640|Q96JM4-2|LRRIQ1 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F}[EP]{I|L} 4 -1 18.5 0 0 1.4829 0 0 743.2801991193375 0 743.2801991193375 0 15.00508444608478 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}[EP]{I|L} 1.4829 - 14 NaN NaN 104366.3 NaN 15776 3943 19713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19723 81.386 NaN 3327000 35 0 371220 0.327 + 17901 MILELDPTF 9 98 547.7755959212911 1093.5366389093822 2 547.7759399414062 MULTI HCD FTMS 0 0 0 19722 2213429.75 1 0 0 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 111.44 0 0 10.191 10.191 95.506 0 0 0 22.17945412406904 42.530586141042534 22.17945412406904 11.14265365197673 0 2.9674165578762484 2 1.6184151806525389 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{I|L}DPT{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}{I|L}DPT{M(Oxidation (M))|F} 10.191;9.172;7.1868;7.1214;7.0258;6.9604;6.7149;6.5539;6.3686;6.2911 +;-;-;-;-;-;-;-;-;- + 3413 NaN NaN 589649.9 NaN 15777 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19724 81.391 NaN 2216800 35 0 470810 0.261 + 26631 SWPDWALPRL 10 85 620.827283562001 1239.6400141908018 2 620.8275146484375 MULTI HCD FTMS 0 0 0 19722 1075382.375 0.6691593322546587 -3 0.0886993408203125 2 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 125.0377797344192 2.9548649632433943E-05 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 117.36 0 0 9.4674 9.4674 97.69 0 0 0 17.78151250383644 97.9761469314083 17.78151250383644 33.64007808576609 0 3.0669015600442577 1.6989700043360187 1.809894379144197 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L};[DP]WSWA{I|L}PR{I|L};[DP]W{[RE]|[WV]}[TA]PR{I|L} 9.4674;6.7537;1.8729 +;-;- + 946 NaN NaN 435551.8 NaN 15778 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19725 81.394 NaN 532460 35 0 67436 0.261 + 23787 RRNLMECTM 9 88 577.2670474681886 1152.519542003177 2 577.2673950195312 MULTI HCD FTMS 0 0 0 19722 393224.03125 0.6064784602064284 2 -0.05580902099609375 3 Unmodified _RRNLMECTM_ REV__ENSG00000151617|ENST00000651419|EDNRA;REV__nc|ENSG00000151617|P25101-4|EDNRA;REV__nc|ENSG00000151617|P25101-5|EDNRA 24.020572477871973 0.15282392193088168 2 {I|L}PVD 4 -1 50.967 0 0 4.4222 0 0 0 725.2657564752561 725.2657564752561 13.950039213511843 0 0 0 0 0.9731975075880328 1.0969100130080565 0.8494850021680094 0 {I|L}PVD 4.4222 - 379 + NaN NaN 174786.9 NaN 15779 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19726 81.397 NaN 763190 35 0 95761 0.262 + 1024 AYGASFLSF 9 52 481.73460884344104 961.4546647536821 2 481.73455810546875 MULTI HCD FTMS 0 0 0 19722 302518.28125 0.3903496006537477 2 -0.05580902099609375 4 Unmodified _AYGASFLSF_ ENSG00000159596|ENST00000372025|TMEM69 154.46347324262513 4.107785341423729E-06 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9 0 + 104.66 0 0 10.886 10.886 90.63 0 0 0 19.041068762088997 68.5054712097132 19.041068762088997 1.706962271689747 0 2.805462187404089 1.3979400086720375 1.579689690656103 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GAS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}QS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YQ]AS{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}SQS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}S[AG]S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}SQS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}S[AG]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G[NG][HK]{[ES]|[DT]|[{I|L}C]} 10.886;10.708;8.6753;6.3337;5.3704;4.1706;3.2073;0.94116 +;-;-;-;-;-;-;- + 361 NaN NaN 212887.9 NaN 15780 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19727 81.401 NaN 469560 35 0 55044 0.261 + 13589 KYPENFFLL 9 70 585.8131605635726 1169.6117681939452 2 585.813720703125 MULTI HCD FTMS 0 0 0 19722 297934.90625 0.0015144851911274965 219 -5.253898620605469 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 70.736 0 0 6.0478 6.0478 88.632 0 0 0 8.172874778693355 51.35029351276792 8.172874778693355 9.208187539523749 0 2.079689690656103 0 0 0.805462187404089 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][DN][VG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[ET]|[MV]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][DN][VG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{I|L} 6.0478;5.2605;4.9621;4.1748;3.9336;3.4595;3.1464;2.8972;2.3738;2.0193 +;-;-;-;-;-;-;-;-;- + 420 NaN NaN 162677.3 NaN 15781 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19728 81.404 NaN 846930 35 0 91650 0.261 -1 0 92 566.2980512400009 1130.5815495468016 2 566.2977905273438 MULTI HCD FTMS 0 0 0 19722 191850.5625 0.5370234283131546 38 -1.0360183715820312 6 NaN NaN 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 47.202 0 0 4.175 0 0 291.1576316128628 0 291.1576316128628 0 29.4683341053401 0 0 0 2.4947026752325154 0 0.3494850021680094 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.175 - 895 NaN NaN 218054.5 NaN 15782 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19729 81.407 NaN 145350 35 0 27533 0.261 + 31938 VYPAGFVYI 9 55 514.7762906703402 1027.5380284074804 2 514.776123046875 MULTI HCD FTMS 0 0 0 19722 36669.8671875 0.18180387516772462 8 -0.1992950439453125 7 Unmodified _VYPAGFVYI_ ACTL6A-ALG3|1|fusion;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3 28.173230860318316 0.11963627304438548 2 VY{I|L} 3 6 32.435 0 0 3.1566 0 0 634.3110522246126 0 634.3110522246126 0 11.465912507003608 0 0 0 0.9247425010840047 0 0 0 + VY{I|L} 3.1566 + + 27 NaN NaN 109826.3 NaN 15783 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19730 81.411 NaN 110660 35 0 10334 0.261 + 23437 RLPHGKTF 8 60 478.27618718912095 954.5378214450419 2 479.2773742675781 MULTI HCD FTMS 0 0 0 19722 42604.8359375 0.35436545937160946 10 -0.258544921875 8 Unmodified _RLPHGKTF_ REV__ENST00000604062.6_2_X:53153022-53153115:+|nuORF 5.760428011301431 0.5334459684533844 2 T{M(Oxidation (M))|F} 2 -1 16.722 0 0 1.7518 0 0 688.4114919546107 0 688.4114919546107 0 12.117581349478641 0 0 0 0 0 0.4247425010840047 0 T{M(Oxidation (M))|F} 1.7518 + + 22 + NaN NaN 95341.4 NaN 15784 3944 19722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19732 81.416 NaN 723380 35 0 102710 0.327 + 32875 WYGWHFPEL 9 92 617.7878064184605 1233.561059903721 2 617.7877807617188 MULTI HCD FTMS 0 0 0 19731 374553.40625 0.6480961645358533 3 -0.0819091796875 1 Unmodified _WYGWHFPEL_ ENSG00000055044|ENST00000264279|NOP58 104.79918948944588 0.003791450360204016 2 WYGWH{M(Oxidation (M))|F}PE{I|L} 9 0 + 85.86 0 0 6.9604 6.9604 92.334 0 0 0 14.86371556024956 14.86371556024956 14.86371556024956 14.86371556024956 0 2.385151878060192 2 0.9489700043360187 0 + + WYGWH{M(Oxidation (M))|F}PE{I|L};[WY]GWH{M(Oxidation (M))|F}PE{I|L};{[QN]|[E{I|L}]|[KN]}[YV]HWG[DC]{I|L};{[QN]|[E{I|L}]|[KN]}M[PG]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}PE{I|L};[EP]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))H][R{M(Oxidation (M))|F}]E{I|L};{[QN]|[E{I|L}]|[KN]}[YV]HW[C(Carbamidomethyl (C))D]{I|L};{[QN]|[E{I|L}]|[KN]}[YV]H[DC]GW{I|L};{[QN]|[E{I|L}]|[KN]}[YV]H[C(Carbamidomethyl (C))D]W{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[YT][R{M(Oxidation (M))|F}]NQ;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[YT][{M(Oxidation (M))|F}V]GNQ 6.9604;5.7554;3.5153;3.0768;2.3938;2.3778;1.9964;1.8536;1.6225;1.5854 +;+;-;-;-;-;-;-;-;- + 1254 + NaN NaN 200829.6 NaN 15785 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19733 81.42 NaN 459750 35 0 43350 0.262 -1 MPVPEILQL 9 74 528.2938600174357 1054.5731671016713 2 528.2938232421875 MULTI HCD FTMS 0 0 0 19731 150527.3125 0.5704660676912349 -7 0.19351959228515625 2 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 39.94969957227396 0.06557568441294001 2 {I|L}{I|L}Q{I|L} 4 -1 43.686 0 0 4.1425 0 0 569.2502805308266 0 569.2502805308266 0 24.83619991011245 0 0 0 1.1747425010840047 0 0 0 {I|L}{I|L}Q{I|L} 4.1425 + + 604 NaN NaN 154452.8 NaN 15786 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19734 81.424 NaN 177280 35 0 40354 0.261 + -1 YAGAVKCSE 9 50 492.7257122783955 983.4368716235911 2 492.72576904296875 MULTI HCD FTMS 0 0 0 19731 113454.46875 0.42440863761005065 3 -0.0819091796875 3 Carbamidomethyl (C) _YAGAVKC(Carbamidomethyl (C))SE_ REV__ENST00000504897.2_1_5:140053125-140053497:+|nuORF 25.399314129420986 0.14091189997036632 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AG{[ES]|[DT]|[{I|L}C]} 9 -1 + 41.188 0 0 4.1882 4.1882 81.779 0 0 0 12.744908942936917 -5.876597117027629 -5.876597117027629 1.320684442917603 0 0.3807196863200844 2 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AG{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AG{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{[ES]|[DT]|[{I|L}C]};[YQ]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Q{[ES]|[DT]|[{I|L}C]};[YQ]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}AG{[ES]|[DT]|[{I|L}C]} 4.1882;4.0539;3.9801;3.4484;2.0995;2.0202 -;-;-;-;-;- 80 NaN NaN 135630.5 NaN 15787 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19735 81.427 NaN 192980 35 0 13058 0.261 + -1 ICVYVFIDLM 10 49 636.8219331399672 1271.6293133467343 2 636.822509765625 MULTI HCD FTMS 0 0 0 19731 78281.8984375 0.6261020664133827 -2 0.05908203125 4 Carbamidomethyl (C) _IC(Carbamidomethyl (C))VYVFIDLM_ REV__tr|U7SRZ0|U7SRZ0_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01478PE=4SV=1 10.823927491677226 0.4098686510432541 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 8 -1 37.452 0 0 2.9452 0 0 0 381.2252016949678 381.2252016949678 31.967809330011434 0 0 0 0 1 1.6989700043360187 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 2.9452 - 26 + NaN NaN 118615.5 NaN 15788 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19736 81.43 NaN 190940 35 0 38373 0.262 + 34331 YPEDFAIDL 9 50 541.755735889454 1081.4969188457078 2 541.7557983398438 MULTI HCD FTMS 0 0 0 19731 56482.7890625 0.11697546035100095 9 -0.228973388671875 5 Unmodified _YPEDFAIDL_ ENSG00000088930|ENST00000377191|XRN2;nc|ENSG00000088930|Q9H0D6-2|XRN2 24.020572477871973 0.15282392193088168 2 KA{I|L}D{I|L} 5 5 47.981 0 0 4.4365 0 0 523.1696644513687 0 523.1696644513687 0 32.49618491916923 0 0 0 1.4247425010840047 0 0 0 KA{I|L}D{I|L} 4.4365 - 28 NaN NaN 133687.9 NaN 15789 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19737 81.434 NaN 182430 35 0 35539 0.261 + 32464 WEDAEDEP 8 36 495.6876623115564 989.3607716899128 2 495.6878967285156 MULTI HCD FTMS 0 0 0 19731 98891.8203125 0.7146436608915109 -2 0.05908203125 6 Unmodified _WEDAEDEP_ REV__ENSG00000122367|ENST00000361373|LDB3;REV__nc|ENSG00000122367|O75112-2|LDB3;REV__nc|ENSG00000122367|O75112-4|LDB3;REV__nc|ENSG00000122367|O75112-5|LDB3;REV__nc|ENSG00000122367|O75112-6|LDB3;REV__nc|ENSG00000122367|O75112-7|LDB3 0.6903765706972694 0.5409681170271811 2 {I|L}[EP] 3 -1 5.9421 0 0 0.6006 0 0 632.1899667763975 0 632.1899667763975 0 5.942124970647031 0 0 0 0 0 0 0 {I|L}[EP] 0.6006 - 2 NaN NaN 105947.2 NaN 15790 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19738 81.437 NaN 119070 35 0 13891 0.261 + 24276 RYFLPPYTF 9 41 602.3138466763942 NaN 0 602.3131713867188 PEAK HCD FTMS 0 0 0 19731 32677.73828125 0.49947303228068357 -39 1.0980300903320312 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.22786006501039813 2 T 1 8 11.99 0 0 0.99697 0 0 165.08091073330007 933.461014056014 1098.5419247893142 0 0 0 0 0 0.5 0 0 0 + T 0.99697 + + 7 + NaN NaN 112084.1 NaN 15791 3945 19731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19740 81.442 NaN 987470 35 0 37889 0.327 + 26381 SSRQKLSPV 9 103 501.2906072263501 1000.5666615195003 2 501.2908020019531 MULTI HCD FTMS 0 0 0 19739 901956.125 0.5102332698315633 17 -0.45604705810546875 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 10.073929032068715 0.27331982688540024 2 Q 1 -1 12.544 0 0 1.2537 0 0 458.27328813254957 411.22343604769304 869.4967241802426 0 0 0 0 0 0.7059771852360797 0 0 0 Q 1.2537 + + 211 + NaN NaN 245420.8 NaN 15792 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19741 81.446 NaN 694650 35 0 77474 0.261 + 26138 SPMDIFDMF 9 87 567.7275478632208 1133.4405427932415 2 567.72802734375 MULTI HCD FTMS 0 0 0 19739 227656.515625 0.7924215329558866 -3 0.08531951904296875 2 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 45.477 0 0 4.0123 0 0 559.2310654726514 0 559.2310654726514 0 36.89387834276005 0 0 0 1.2302046884880937 0 0.4247425010840047 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0123 + + 1026 + NaN NaN 193696.1 NaN 15793 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19742 81.45 NaN 365430 35 0 81646 0.261 + 20730 PFYTVDITF 9 61 551.7769310310103 1101.5393091288206 2 552.7820434570312 MULTI HCD FTMS 0 0 0 19739 134166.0625 0.7164414969344871 1 -0.026214599609375 3 Unmodified _PFYTVDITF_ REV__ENSG00000149635|ENST00000279028|OCSTAMP 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.1891 0 0 936.4956975338972 0 936.4956975338972 0 1.4165061435177506 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1891 + + 74 + NaN NaN 149328 NaN 15794 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19743 81.453 NaN 129250 35 0 44375 0.262 + 323 AGAPLELVL 9 37 441.76845900555986 881.5223650779197 2 441.7684020996094 MULTI HCD FTMS 0 0 0 19739 78170.3125 0.016139589964795312 13 -0.3412933349609375 4 Unmodified _AGAPLELVL_ ENST00000471461.5_1_7:72717735-72721871:-|nuORF 12.531546534597751 0.2520865569484384 2 V{I|L} 2 7 28.711 0 0 3.257 0 0 651.3596586343635 0 651.3596586343635 0 13.226825097560422 0 0 0 0.9247425010840047 0 0 0 + V{I|L} 3.257 + + 28 + NaN NaN 110738 NaN 15795 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19744 81.457 NaN 231420 35 0 35469 0.261 -1 0 47 422.2999138453236 842.5852747574472 2 422.299560546875 MULTI HCD FTMS 0 0 0 19739 183282.71875 0.8624720957955447 -4 0.12165069580078125 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7332 0 0 677.5060338900629 0 677.5060338900629 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7332 - 4 + NaN NaN 118570.1 NaN 15796 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19745 81.46 NaN 306350 35 0 21174 0.261 -1 MLLETGLER 9 73 539.2845651434391 1076.554577353678 2 539.2700805664062 MULTI HCD FTMS 0 0 0 19739 15961.0234375 0.5776438745727865 -4 0.12165069580078125 6 Oxidation (M) _M(Oxidation (M))LLETGLER_ ENSG00000107187|ENST00000371748|LHX3 12.531546534597751 0.2520865569484384 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 -1 + 43.65 0 0 4.0546 4.0546 84.634 0 0 0 16.02059991327962 3.1234684152074976 3.1234684152074976 8.750612633916994 0 0 2 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PQ[QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[WR]{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}E][PS]{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PQ[WR]{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]P[AG][QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4.0546;3.2418;2.5665;2.4775;2.3549;1.8022;1.8017;1.2204;1.1264;0.94685 -;-;-;-;-;-;-;-;-;- 375 NaN NaN 137087.7 NaN 15797 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19746 81.463 NaN 236310 35 0 27574 0.261 + 2039 DEEDFPNL 8 64 489.7057561996618 977.3969594661236 2 489.7059326171875 MULTI HCD FTMS 0 0 0 19739 71702.09375 0.49435118355666713 -6 0.1640167236328125 7 Unmodified _DEEDFPNL_ REV__ENSG00000131381|ENST00000253699|RBSN 2.577480529830294 0.5381683276125971 2 A 1 -1 6.7474 0 0 0.69035 0 0 132.00588545783836 771.3323458307249 903.3382312885633 0 0 0 0 0 0.3252574989159953 0 0 0 A 0.69035 - 24 + NaN NaN 132185.8 NaN 15798 3946 19739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19748 81.468 NaN 316350 35 0 62131 0.327 + -1 MEHEPCTPF 9 69 574.231193575262 1146.4478342173238 2 574.2313842773438 MULTI HCD FTMS 0 0 0 19747 157790.046875 0.8828209285607945 1 -0.02945709228515625 1 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 4.3292370932331545 0.3181982124262546 2 D[TP]{M(Oxidation (M))|F} 4 -1 21.427 0 0 1.869 0 0 668.2409688382207 0 668.2409688382207 0 10.96910013008056 0 0 0 1 0 0 0 D[TP]{M(Oxidation (M))|F} 1.869 - 51 + NaN NaN 147566.5 NaN 15799 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19749 81.473 NaN 465360 35 0 65618 0.261 + 12984 KYILVSLIL 9 81 531.3519967121779 1060.6894404911557 2 531.3521118164062 MULTI HCD FTMS 0 0 0 19747 120669.25 0.5902677158878716 6 -0.1369781494140625 2 Unmodified _KYILVSLIL_ ENSG00000141030|ENST00000268717|COPS3;nc|ENSG00000141030|Q9UNS2-2|COPS3 32.78568957990786 0.09846250359632436 2 S{I|L}{I|L}{I|L} 4 5 40.974 0 0 3.863 0 0 616.3945545414613 0 616.3945545414613 0 26.994784489444967 0 0 0 1 0 0.3807196863200844 0 + S{I|L}{I|L}{I|L} 3.863 + + 87 NaN NaN 162405.2 NaN 15800 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19750 81.476 NaN 589920 35 0 57732 0.261 + 18452 MPVPEILQL 9 85 528.2938600174357 1054.5731671016713 2 528.293701171875 MULTI HCD FTMS 0 0 0 19747 188740.5 0.715285811331266 -5 0.14786529541015625 3 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 47.748688679222035 0.03472022231463587 2 {I|L}{I|L}Q{I|L} 4 5 44.68 0 0 4.2368 0 0 569.2511783482711 0 569.2511783482711 0 30.70107520596089 0 0 0 1.274227503252014 0 0 0 + {I|L}{I|L}Q{I|L} 4.2368 + + 708 NaN NaN 183620.4 NaN 15801 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19751 81.479 NaN 192770 35 0 10651 0.261 + 9907 ICLWHVPR 8 62 512.2815524109606 1022.5485518887211 2 512.2821044921875 MULTI HCD FTMS 0 0 0 19747 84416.90625 0.3162345515626114 20 -0.5446090698242188 4 Unmodified _ICLWHVPR_ ENST00000486062.1_1_19:22882216-22882330:+|nuORF 2.8892196856762586 0.5377058178582064 2 RW 2 7 7.0783 0 0 0.69223 0 0 64.03445988822803 613.2987764947874 677.3332363830154 0 0 0 0 0 0 0 0 0 RW 0.69223 - 16 + NaN NaN 125330.3 NaN 15802 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19752 81.483 NaN 324290 35 0 59912 0.261 + 8112 GLIAELLSL 9 57 464.78921777002944 927.5638826068589 2 464.78924560546875 MULTI HCD FTMS 0 0 0 19747 68179.6015625 0.8188281163429835 -2 0.05245208740234375 5 Unmodified _GLIAELLSL_ REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF 46.020951573049366 0.037705236580089195 2 [TP]T[{I|L}A]{I|L}{I|L}S{I|L} 9 -1 + 58.394 0 0 6.2955 6.2955 90.777 0 0 0 12.164537177296495 17.459989556713253 12.164537177296495 13.010299956639813 0 1.3807196863200843 1.6989700043360187 0.3494850021680094 0 [TP]T[{I|L}A]{I|L}{I|L}S{I|L};{[VA]|[{I|L}G]}E[{I|L}A]{I|L}{I|L}S{I|L} 6.2955;4.8928 -;- 235 NaN NaN 136418.7 NaN 15803 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19753 81.486 NaN 105540 35 0 9910.9 0.261 -1 0 58 451.7799129147305 901.545272896261 2 451.78009033203125 MULTI HCD FTMS 0 0 0 19747 25888.947265625 0.3910524666164819 -5 0.14786529541015625 6 NaN NaN 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DP 7 -1 34.914 0 0 3.8727 0 0 0 71.11322738822972 71.11322738822972 20.744944827498415 0 0 0 0 0 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DP 3.8727 - 98 NaN NaN 101824.1 NaN 15804 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19754 81.489 NaN 205540 35 0 17848 0.261 + 6867 FPTNVDLAISV 11 68 588.3187067865601 1174.6228606399202 2 588.3185424804688 MULTI HCD FTMS 0 0 0 19747 57208.5546875 0.7546286954695454 -3 0.08202362060546875 7 Unmodified _FPTNVDLAISV_ ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;nc|ENSG00000155393|Q7Z4Q2-3|HEATR3 11.517880264261096 0.3567267433909682 2 {I|L}SV 3 8 33.188 0 0 2.8254 0 0 857.4297962873062 0 857.4297962873062 0 13.26606256887672 0 0 0 0.8494850021680094 0 0 0 + {I|L}SV 2.8254 + + 332 NaN NaN 123917.8 NaN 15805 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19755 81.493 NaN 124530 35 0 39339 0.261 + 17203 LYNDPFFPLS 10 44 606.8007917785204 1211.5870306238407 2 606.3009033203125 MULTI HCD FTMS 0 0 0 19747 35692.04296875 0.4405073539840834 -5 0.14786529541015625 8 Unmodified _LYNDPFFPLS_ ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181;TMEM181-HP1BP3|1|fusion 6.2057823575117 0.44245551207394906 2 W 1 10 8.4949 0 0 0.70113 0 0 749.3405229107533 273.1538485162719 1022.4943714270253 0 0 0 0 0 0.5 0 0 0 W 0.70113 - 15 + NaN NaN 118351 NaN 15806 3947 19747 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19757 81.498 NaN 410080 35 0 17122 0.327 + 12545 KSKLTGTRQ 9 87 509.80379454164563 1017.5930361500913 2 509.80389404296875 MULTI HCD FTMS 0 0 0 19756 380351.28125 0.3006166582443307 21 -0.5642013549804688 1 Unmodified _KSKLTGTRQ_ ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ;POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 3.2813086475875832 0.32614229037259 2 A 1 9 5.8412 0 0 0.57402 0 0 105.07986852358279 838.4611300104124 943.5409985339952 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.57402 - 134 + NaN NaN 158962.4 NaN 15807 3948 19756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19758 81.502 NaN 263930 35 0 13884 0.261 -1 MLLETGLER 9 69 539.2845651434391 1076.554577353678 2 539.2681274414062 MULTI HCD FTMS 0 0 0 19756 14505.5380859375 0.5249685432475301 -2 0.05567169189453125 2 Oxidation (M) _M(Oxidation (M))LLETGLER_ ENSG00000107187|ENST00000371748|LHX3 12.531546534597751 0.2520865569484384 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 -1 + 48.567 0 0 4.5113 4.5113 88.067 0 0 0 23.09984838316907 4.232712163289278 4.232712163289278 13.3994806169435 0 0 2 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PQ[QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[WR]{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}E][PS]{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]P[AG][QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PQ[WR]{[QD]|[EN]|[WG]|[KD]|[RS]} 4.5113;3.2666;2.5895;2.561;2.3656;1.6885;1.6632;0.84962;0.83315;0.76211 -;-;-;-;-;-;-;-;-;- 290 NaN NaN 124416.4 NaN 15808 3948 19756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19760 81.507 NaN 2815900 35 0 316000 0.327 + 17902 MILELDPTF 9 103 547.7755959212911 1093.5366389093822 2 547.7758178710938 MULTI HCD FTMS 0 0 0 19759 1479059.5 0.6682206652368343 5 -0.13748931884765625 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 111.72 0 0 10.217 10.217 98.139 0 0 0 21.351971076465475 51.34434091480394 21.351971076465475 32.372118693881546 0 3.0228787452803374 2 1.591129063296272 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}YP;[TP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]} 10.217;7.2564;7.2196;6.7845;5.8101;5.4518;5.369;5.3375;4.7451;4.3418 +;-;-;-;-;-;-;-;-;- + 3349 NaN NaN 517850.2 NaN 15809 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19761 81.511 NaN 710950 35 0 135490 0.261 + 30113 VFYPYPQYF 9 62 612.2924531755696 1222.570353417939 2 612.2921752929688 MULTI HCD FTMS 0 0 0 19759 267951.1875 0.25965564406936104 -4 0.09148406982421875 2 Unmodified _VFYPYPQYF_ ENSG00000103160|ENST00000219439|HSDL1 85.35673624503755 0.00464763827098139 2 [{M(Oxidation (M))|F}V]YPYPQY{M(Oxidation (M))|F} 9 0 + 75.896 0 0 6.2079 6.2079 88.892 0 0 0 7.147642715192504 68.90600959017256 7.147642715192504 9.208187539523749 0 2.7302046884880937 0 0 0 + + [{M(Oxidation (M))|F}V]YPYPQY{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPYP[AG]Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y[SG]YP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPY[SG]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F} 6.2079;5.4547;3.5919;3.5919 +;-;-;- + 243 NaN NaN 208787.5 NaN 15810 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19762 81.515 NaN 421760 35 0 22969 0.262 -1 LVMVVVQLE 9 92 523.3037745104898 NaN 0 523.3037719726562 PEAK HCD FTMS 0 0 0 19759 200379.140625 0.3090872819960186 25 -0.7089157104492188 3 Oxidation (M) _LVM(Oxidation (M))VVVQLE_ ENST00000263934.10_1_1:10437581-10437845:+|nuORF 14.838274106304384 0.2220448417561729 2 NVEVVQ 6 -1 19.089 0 0 1.8274 0 0 116.09987747867486 257.1136873834594 373.21356486213426 0 0 0 0 0 0.23965182871044374 0 0 0.2614393726401688 NVEVVQ 1.8274 - 170 + NaN NaN 164258.6 NaN 15811 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19763 81.518 NaN 512020 35 0 40008 0.261 + 34754 YPYLTSPEF 9 78 558.7666847694474 1115.5188166056946 2 558.7667846679688 MULTI HCD FTMS 0 0 0 19759 157102.875 0.46311814897628 7 -0.1999664306640625 4 Unmodified _YPYLTSPEF_ REV__ENSG00000179981|ENST00000580243|TSHZ1;REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 36.04419817259434 0.08350412372117409 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 9 -1 + 74.86 0 0 6.7108 6.7108 92.55 0 0 0 13.499161495794425 56.38743756437101 13.499161495794425 19.477437731477423 0 2.805462187404089 2 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YT]D[TP]{M(Oxidation (M))|F};[Y{I|L}]PE{I|L}D[YG]{M(Oxidation (M))|F};[YE][{I|L}P]{I|L}D[YG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[DV]D[TP]{M(Oxidation (M))|F};[Y{I|L}]P[YT]D[TP]{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}[DV]D[TP]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]GD{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[QN]|[E{I|L}]|[KN]};[Y{I|L}]SHH{M(Oxidation (M))|F}A{[QN]|[E{I|L}]|[KN]};[Y{M(Oxidation (M))|F}]{[ET]|[MV]}P{M(Oxidation (M))|F}A{[QN]|[E{I|L}]|[KN]} 6.7108;4.9648;4.1398;3.4607;2.9679;2.3938;2.2104;1.4796;1.4133;1.059 -;-;-;-;-;-;-;-;-;- 914 NaN NaN 170325.9 NaN 15812 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19764 81.521 NaN 316180 35 0 62022 0.261 -1 YDTMFAIII 9 63 551.7769310310103 1101.5393091288206 2 552.7819213867188 MULTI HCD FTMS 0 0 0 19759 98321.546875 0.5250331932789586 4 -0.0979461669921875 5 Oxidation (M) _YDTM(Oxidation (M))FAIII_ tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1 11.640296217721598 0.25978676193971967 2 KMAS 4 -1 18.136 0 0 1.6464 0 0 0 681.3131807916624 681.3131807916624 1.6824376479242176 0 0 0 0 0 0 0 0 KMAS 1.6464 - 186 + NaN NaN 139125.1 NaN 15813 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19765 81.525 NaN 402180 35 0 41034 0.261 + 7783 FYNSGLLDTF 10 82 588.7823465717859 1175.5501402103716 2 588.7820434570312 MULTI HCD FTMS 0 0 0 19759 122945.0234375 0.46471931383560977 -3 0.06524658203125 6 Unmodified _FYNSGLLDTF_ ENSG00000169764|ENST00000337130|UGP2;ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2 110.6747026088012 5.03479218847684E-05 2 YY{I|L}G{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F} 10 4 + 71.648 0 0 6.0949 6.0949 86.186 0 0 0 5.051499783199063 15.026975159433533 5.051499783199063 5.051499783199063 0 1.5 1.6989700043360187 0.2742275032520141 1.2302046884880937 YY{I|L}G{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F};[Y{I|L}]YG{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F};[YV][KS]{[CT]|[{M(Oxidation (M))|F}G]}{I|L}DT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][VS]{[QG]|[NA]}{I|L}DT{M(Oxidation (M))|F};[Y{I|L}]{[MS]|[{M(Oxidation (M))|F}A]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}RT{M(Oxidation (M))|F};[PS][{I|L}T][WP]{I|L}DT{M(Oxidation (M))|F};[PS][DV][WP]{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[K{I|L}]{[SA]|[TG]}T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[Q{I|L}]{[SA]|[TG]}T{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}[YN][VG]T{M(Oxidation (M))|F} 6.0949;5.6652;4.809;4.2399;3.4391;2.9684;2.9684;2.5923;2.5923;2.4789 -;-;-;-;-;-;-;-;-;- 690 NaN NaN 155112.9 NaN 15814 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19766 81.528 NaN 235210 35 0 14214 0.261 + -1 MLAEEIRSL 9 62 539.2845651434391 1076.554577353678 2 539.2683715820312 MULTI HCD FTMS 0 0 0 19759 9581.87109375 0.3467765814594703 -1 0.00957489013671875 7 Oxidation (M) _M(Oxidation (M))LAEEIRSL_ REV__ENSG00000148843|ENST00000369797|PDCD11 12.531546534597751 0.2520865569484384 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[CP]|[EA]}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 9 -1 + 38.847 0 0 3.6085 3.6085 81.855 0 0 0 11.249387366083003 7.147642715192511 7.147642715192511 3.0102999566398125 0 0 2 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[CP]|[EA]}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[QA]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[QN]|[E{I|L}]|[KN]}{[CP]|[EA]}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PQ[QT]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}T]PN{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[NV]|[RG]}[WR]{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}E][PS]{I|L}E{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 3.6085;3.3288;2.5635;2.3099;2.2199;1.7057;1.5446;1.4546;1.3835;1.0279 -;-;-;-;-;-;-;-;-;- 309 NaN NaN 138187 NaN 15815 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19767 81.531 NaN 250600 35 0 26174 0.261 + 35954 YYVGFAYLM 9 68 571.7645532665308 1141.5145535998615 2 571.7640991210938 MULTI HCD FTMS 0 0 0 19759 43609.8515625 0.7927195849728026 -3 0.06524658203125 8 Oxidation (M) _YYVGFAYLM(Oxidation (M))_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 45.7499826716795 0.03894913563566938 2 AY{I|L}{M(Oxidation (M))|F} 4 5 46.938 0 0 4.1119 0 0 629.2844065916918 0 629.2844065916918 0 29.948500216800937 0 0 0 1.5 0 0 0 + AY{I|L}{M(Oxidation (M))|F} 4.1119 + + 174 NaN NaN 149198.8 NaN 15816 3949 19759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19769 81.536 NaN 2327400 35 0 498900 0.327 + 26632 SWPDWALPRL 10 77 620.827283562001 1239.6400141908018 2 620.8273315429688 MULTI HCD FTMS 0 0 0 19768 1338524.5 0.8329001678370458 3 -0.06873321533203125 1 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 114.18643581695662 4.601856720657053E-05 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 110.8 0 0 8.9381 8.9381 97.217 0 0 0 17.78151250383644 93.35979084976366 17.78151250383644 33.62273132779855 0 3.0669015600442577 1.6989700043360187 1.579689690656103 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L};[DP]WSWA{I|L}PR{I|L} 8.9381;6.2258 +;- + 735 NaN NaN 450754.9 NaN 15817 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19770 81.541 NaN 111180 35 0 5605 0.261 + -1 IMLPLAYLL 9 63 531.8170302062131 1061.619507479226 2 531.81689453125 MULTI HCD FTMS 0 0 0 19768 71549.9453125 0.45979390790680047 -2 0.038787841796875 2 Oxidation (M) _IM(Oxidation (M))LPLAYLL_ REV__tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1 2.302733041254933 0.33356062215410776 2 {I|L}N 2 -1 6.1979 0 0 0.58381 0 0 132.02695515409204 699.4517916315061 831.4787467855981 0 0 0 0 0 0 0 0 0 {I|L}N 0.58381 - 18 + NaN NaN 102187.2 NaN 15818 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19771 81.544 NaN 153410 35 0 20489 0.261 + 23788 RRNLMECTM 9 62 577.2670474681886 1152.519542003177 2 577.2669067382812 MULTI HCD FTMS 0 0 0 19768 69963.7109375 0.10790663923773772 8 -0.223175048828125 3 Unmodified _RRNLMECTM_ REV__ENSG00000151617|ENST00000651419|EDNRA;REV__nc|ENSG00000151617|P25101-4|EDNRA;REV__nc|ENSG00000151617|P25101-5|EDNRA 10.073929032068715 0.27331982688540024 2 ED 2 -1 17.078 0 0 1.4818 0 0 670.3695003545428 235.0651796930297 905.4346800475724 0 0 0 0 0 1 0 0.5 0 ED 1.4818 - 18 + NaN NaN 121662.9 NaN 15819 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19772 81.548 NaN 146500 35 0 15047 0.262 + 1025 AYGASFLSF 9 47 481.73460884344104 961.4546647536821 2 481.7349853515625 MULTI HCD FTMS 0 0 0 19768 73544.625 0.09489712449891696 8 -0.223175048828125 4 Unmodified _AYGASFLSF_ ENSG00000159596|ENST00000372025|TMEM69 61.357469665136826 0.01568246967499496 2 S{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 5 4 64.68 0 0 6.7274 0 0 362.1587086408219 0 362.1587086408219 0 59.195925227640984 0 0 0 2.3494850021680094 0 0.7742275032520141 0 + S{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 6.7274 + + 74 NaN NaN 109122.1 NaN 15820 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19773 81.551 NaN 123990 35 0 11123 0.261 + 22569 QSPLGVLC 8 51 408.71814798369485 NaN 0 408.71820068359375 PEAK HCD FTMS 0 0 0 19768 27113.576171875 0.784511164780138 1 -0.0261688232421875 5 Unmodified _QSPLGVLC_ REV__ENST00000579583.5_3_18:72163621-72167234:+|nuORF 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 10.485 0 0 1.2858 0 0 165.07909154902808 500.2490328424438 665.3281243914719 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.2858 - 14 + NaN NaN 113060.1 NaN 15821 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19774 81.554 NaN 114310 35 0 8727.6 0.261 + -1 GEMKCAQLMW 10 49 643.2729726053542 1284.5313922775083 2 643.7766723632812 MULTI HCD FTMS 0 0 0 19768 7424.5859375 0.09832837611625331 20 -0.5649185180664062 6 Carbamidomethyl (C),2 Oxidation (M) _GEM(Oxidation (M))KC(Carbamidomethyl (C))AQLM(Oxidation (M))W_ REV__ENST00000533968.1_1_11:47397254-47399953:-|nuORF 3.944395688203298 0.4544253912184634 2 {I|L} 1 -1 5.4846 0 0 0.42697 0 0 260.0552703066083 908.3750704400999 1168.4303407467082 0 0 0 0 0 0 0 0 0 {I|L} 0.42697 + + 8 + NaN NaN 112742 NaN 15822 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19775 81.558 NaN 162130 35 0 23062 0.261 + 7484 FVYMYVHTAD 10 47 623.2829264576867 1244.5512999821733 2 623.7855224609375 MULTI HCD FTMS 0 0 0 19768 31823.263671875 0.33957325027829005 -2 0.038787841796875 7 Unmodified _FVYMYVHTAD_ REV__ENSG00000141526|ENST00000582743|SLC16A3 10.823927491677226 0.4098686510432541 2 [{M(Oxidation (M))|F}V]Y 3 -1 20.458 0 0 1.6438 0 0 0 832.328313492192 832.328313492192 20.457574905606748 0 0 0 0 1 0 0 0 [{M(Oxidation (M))|F}V]Y 1.6438 + + 23 NaN NaN 113335.7 NaN 15823 3950 19768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19777 81.563 NaN 441470 35 0 61907 0.327 + 13590 KYPENFFLL 9 55 585.8131605635726 1169.6117681939452 2 585.8137817382812 MULTI HCD FTMS 0 0 0 19776 253511.78125 0.0012886702109262444 226 -5.365631103515625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 67.182 0 0 5.7439 5.7439 88.808 0 0 0 3.2171966960944403 45.755083869034095 3.2171966960944403 9.208187539523756 0 2.086696871556164 0 0 1.0451140161145327 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.7439;4.9567;3.0284 +;-;- + 174 NaN NaN 156632.4 NaN 15824 3951 19776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19778 81.567 NaN 540420 35 0 64684 0.261 + 18453 MPVPEILQL 9 69 528.2938600174357 1054.5731671016713 2 528.2938842773438 MULTI HCD FTMS 0 0 0 19776 185960.109375 0.7047487301853489 -1 0.0261688232421875 2 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 47.748688679222035 0.03472022231463587 2 [VP]{M(Oxidation (M))|F}[EP]{I|L}{I|L}Q{I|L} 9 2 + 49.644 0 0 4.7075 4.7075 83.887 0 0 0 4.651049597579728 35.66447164506137 4.651049597579728 4.771212547196626 0 1.7302046884880937 0 0 0 [VP]{M(Oxidation (M))|F}[EP]{I|L}{I|L}Q{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[EP]{I|L}{I|L}Q{I|L};[VP]{M(Oxidation (M))|F}[EP]{I|L}{I|L}[AG]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[EP]{I|L}{I|L}[AG]{I|L} 4.7075;4.2551;3.8343;3.3819 -;+;-;- + 306 NaN NaN 167959.9 NaN 15825 3951 19776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19779 81.571 NaN 169480 35 0 12882 0.261 + -1 ICVYVFIDLM 10 53 636.8219331399672 1271.6293133467343 2 636.8223266601562 MULTI HCD FTMS 0 0 0 19776 52053.90234375 0.4163294001910658 4 -0.10504913330078125 3 Carbamidomethyl (C) _IC(Carbamidomethyl (C))VYVFIDLM_ REV__tr|U7SRZ0|U7SRZ0_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01478PE=4SV=1 6.723162845929126 0.4397169348982109 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 8 -1 23.473 0 0 1.8459 0 0 0 381.2251291455484 381.2251291455484 18.411290632962718 0 0 0 0 1 0 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]}{[CP]|[EA]}A{I|L} 1.8459 - 22 + NaN NaN 117880.2 NaN 15826 3951 19776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19780 81.574 NaN 278340 35 0 39401 0.261 + 14043 KYVEQLLTLF 10 71 627.360148145026 1252.7057433568518 2 627.3590698242188 MULTI HCD FTMS 0 0 0 19776 47754.43359375 0.49312552291905143 -1 0.0261688232421875 4 Unmodified _KYVEQLLTLF_ CUL5-ATM|1|fusion;CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5 37.07464296494664 0.1707926854601146 2 HKT{I|L}{M(Oxidation (M))|F} 5 7 49.553 0 0 3.9556 0 0 608.3477650373062 0 608.3477650373062 0 40.511525224473814 0 0 0 0.8807196863200843 0 0.8807196863200843 0 HKT{I|L}{M(Oxidation (M))|F} 3.9556 - 170 NaN NaN 131166.4 NaN 15827 3951 19776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19781 81.577 NaN 370550 35 0 26914 0.261 + 21673 PYYPSPGVLF 10 80 570.2927044243268 1138.5708559154534 2 570.2933349609375 MULTI HCD FTMS 0 0 0 19776 76682.8515625 0.6104607572647586 -2 0.05538177490234375 5 Unmodified _PYYPSPGVLF_ ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;TMEM181-HP1BP3|1|fusion 64.23631603340823 0.02601519761747251 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YPS[RP]{I|L}{M(Oxidation (M))|F} 9 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y + + 48.505 4.437 1.0485 4.2602 4.2602 61.272 0 0 0 0 16.61568452647081 0 0 0 2.2614393726401687 0 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YPS[RP]{I|L}{M(Oxidation (M))|F} 4.2602 - 527 + NaN NaN 153006.2 NaN 15828 3951 19776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19782 81.58 NaN 256970 35 0 28778 0.261 + 7485 FVYMYVHTAD 10 61 623.2829264576867 1244.5512999821733 2 623.2821044921875 MULTI HCD FTMS 0 0 0 19776 55685.8671875 0.49861634803042515 -2 0.05538177490234375 6 Unmodified _FVYMYVHTAD_ REV__ENSG00000141526|ENST00000582743|SLC16A3 10.823927491677226 0.4098686510432541 2 [YN]{I|L}[WD][QP]Y{M(Oxidation (M))|F} 9 -1 + 42.113 0 0 3.3838 3.3838 81.484 0 0 0 19.621892823592972 18.7101498947667 18.7101498947667 2.5257498915995242 0 0.5 1.3979400086720375 0 0 [YN]{I|L}[WD][QP]Y{M(Oxidation (M))|F};[YN]{I|L}Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[YC]|[HE]}{M(Oxidation (M))|F} 3.3838;3.1808 -;- 81 NaN NaN 129623.7 NaN 15829 3951 19776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19784 81.585 NaN 957830 35 0 42629 0.327 + 14847 LKEQKERA 8 102 501.2906072263501 1000.5666615195003 2 501.2906494140625 MULTI HCD FTMS 0 0 0 19783 952969.1875 0.5390911720754189 23 -0.6501922607421875 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 6.723162845929126 0.5320176132289695 2 Q 1 7 12.474 0 0 1.2467 0 0 458.2732332736544 411.22299311688477 869.4962263905392 0 0 0 0 0 0.8494850021680094 0 0 0 + Q 1.2467 + + 75 + NaN NaN 241141.6 NaN 15830 3952 19783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19785 81.59 NaN 547630 35 0 71413 0.261 -1 0 79 566.2980512400009 1130.5815495468016 2 566.2982177734375 MULTI HCD FTMS 0 0 0 19783 229894.078125 0.6435139119468556 46 -1.2816543579101562 2 NaN NaN 2 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 -1 54.257 0 0 4.799 0 0 291.1578846662125 0 291.1578846662125 0 29.822260034532135 0 0 0 2.4802046884880937 0 0.25 0 PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.799 - 587 NaN NaN 169273.7 NaN 15831 3952 19783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19786 81.594 NaN 111620 35 0 10667 0.261 + 2518 DSNEDYFT 8 42 495.6876623115564 989.3607716899128 2 495.6878967285156 MULTI HCD FTMS 0 0 0 19783 92468.8359375 0.6682278395111982 5 -0.14131927490234375 3 Unmodified _DSNEDYFT_ REV__ENSG00000165837|ENST00000298738|ERICH6B;REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B 0.6903765706972694 0.5409681170271811 2 P 1 -1 1.9897 0 0 0.20111 0 0 357.172552551044 532.1218966119749 889.294449163019 0 0 0 0 0 0 0 0 0 P 0.20111 - 6 + NaN NaN 103393.1 NaN 15832 3952 19783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19787 81.597 NaN 62881 35 0 4627.7 0.261 -1 0 45 479.27746304091426 956.5403731486285 2 479.27685546875 MULTI HCD FTMS 0 0 0 19783 18923.14453125 0.13360428030128776 -10 0.26513671875 4 NaN NaN 2 [DP]T{M(Oxidation (M))|F} 4 -1 7.7469 0 0 0.80989 0 0 0 493.3131141977098 493.3131141977098 4.252057161061274 0 0 0 0 0 0 0 0 [DP]T{M(Oxidation (M))|F} 0.80989 - 18 NaN NaN 95730 NaN 15833 3952 19783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19788 81.6 NaN 94095 35 0 7901.3 0.261 + 33187 YEWFRELEL 9 46 642.8161398670906 1283.617726800981 2 642.8175048828125 MULTI HCD FTMS 0 0 0 19783 59538.94140625 1 0 0 5 Unmodified _YEWFRELEL_ ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2 11.494710602746466 0.2610445893512368 2 {I|L}E{I|L} 3 6 26.995 0 0 2.103 0 0 910.3984246656521 0 910.3984246656521 0 23.015384402724592 0 0 0 0.3807196863200844 0 0 0 + {I|L}E{I|L} 2.103 + + 11 NaN NaN 99039.9 NaN 15834 3952 19783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19790 81.605 NaN 236420 35 0 88096 0.327 + 23626 RPPPTRRR 8 51 518.3172304713507 1034.6199080095014 2 518.3173828125 MULTI HCD FTMS 0 0 0 19789 59736.82421875 0.16150909593086427 1 -0.03954315185546875 1 Unmodified _RPPPTRRR_ FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant 0.6903765706972694 0.5409681170271811 2 A 1 8 6.9897 0 0 0.67558 0 0 149.19766685353108 811.3620356725042 960.5597025260354 0 0 0 0 0 0 0 0 0 A 0.67558 - 14 + NaN NaN 147139.4 NaN 15835 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19791 81.61 NaN 781290 35 0 163180 0.261 + 21601 PYNPLWAQL 9 71 551.2897008140378 1100.5648486948755 2 551.7766723632812 MULTI HCD FTMS 0 0 0 19789 29175.5078125 0.06940435802123412 15 -0.43050384521484375 2 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 13.90604991867851 0.24021115267848145 2 EAS[HQ]AS{[QN]|[E{I|L}]|[KN]} 9 8 49.147 0 0 4.4656 0 0 130.1219062613622 0 130.1219062613622 0 30.757659435244733 0 0 0 0.4247425010840047 0 2.079689690656103 0 EAS[HQ]AS{[QN]|[E{I|L}]|[KN]} 4.4656 - 957 + NaN NaN 214724.9 NaN 15836 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19792 81.613 NaN 443970 35 0 171940 0.261 -1 IPVTIMDVF 9 50 525.7804185521196 1049.5462841710391 2 525.7807006835938 MULTI HCD FTMS 0 0 0 19789 310591.03125 0.9951145943708601 1 -0.03954315185546875 3 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 25.399314129420986 0.14091189997036632 2 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DV{M(Oxidation (M))|F} 6 -1 38.461 0 0 3.6645 0 0 309.20534183563836 0 309.20534183563836 0 36.242209500285014 0 0 0 1.305462187404089 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DV{M(Oxidation (M))|F} 3.6645 + + 13 NaN NaN 158614 NaN 15837 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19793 81.616 NaN 427370 35 0 41126 0.261 -1 SPMDIFDMF 9 89 567.7275478632208 1133.4405427932415 2 567.7282104492188 MULTI HCD FTMS 0 0 0 19789 204987.984375 0.7135174337972556 4 -0.121612548828125 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 45.918 0 0 4.0512 0 0 559.2312379020235 0 559.2312379020235 0 28.064250275506875 0 0 0 1.274227503252014 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0512 + + 390 + NaN NaN 151801.3 NaN 15838 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19794 81.62 NaN 214280 35 0 21177 0.261 -1 IPFFCYQIF 9 76 617.803621500341 NaN 0 617.7879638671875 PEAK HCD FTMS 0 0 0 19789 30051.07421875 1 0 0 5 Carbamidomethyl (C) _IPFFC(Carbamidomethyl (C))YQIF_ ENSG00000104341|ENST00000521545|LAPTM4B;nc|ENSG00000104341|Q86VI4|LAPTM4B 11.640296217721598 0.23883959125015683 2 {I|L} 1 -1 6.9897 0 0 0.56661 0 0 166.08019265132413 951.4018085136336 1117.4820011649576 0 0 0 0 0 0 0 0 0 {I|L} 0.56661 + + 48 + NaN NaN 138690.5 NaN 15839 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19795 81.623 NaN 148150 35 0 19082 0.264 -1 0 43 422.2999138453236 842.5852747574472 2 422.3000793457031 MULTI HCD FTMS 0 0 0 19789 56822.6015625 0.2673896840487836 3 -0.102020263671875 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8377 0 0 677.5066137240473 0 677.5066137240473 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8377 - 3 + NaN NaN 108848.4 NaN 15840 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19796 81.626 NaN 131960 35 0 11268 0.261 + 2040 DEEDFPNL 8 41 489.7057561996618 977.3969594661236 2 489.70587158203125 MULTI HCD FTMS 0 0 0 19789 77081.8125 0.5314417368749166 1 -0.03954315185546875 7 Unmodified _DEEDFPNL_ REV__ENSG00000131381|ENST00000253699|RBSN 2.577480529830294 0.5381683276125971 2 {I|L} 1 -1 5.4846 0 0 0.56114 0 0 155.09403856225543 706.1966646783811 861.2907032406365 0 0 0 0 0 0 0 0 0 {I|L} 0.56114 + + 2 + NaN NaN 107539.6 NaN 15841 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19797 81.63 NaN 339710 35 0 24961 0.261 + 15708 LPESIGALLHL 11 83 581.8451586143035 1161.675764295407 2 581.8456420898438 MULTI HCD FTMS 0 0 0 19789 87122.3984375 0.7378171841906568 1 -0.03954315185546875 8 Unmodified _LPESIGALLHL_ ENSG00000137269|ENST00000370888|LRRC1 81.89019881105858 0.0038048568122134203 2 {I|L}PES{I|L}Q{I|L}{I|L}[H{I|L}] 10 2 + 65.883 0 0 5.6714 5.6714 84.222 0 0 0 35.13341804806679 7.269987279362624 7.269987279362624 1.8752072083646283 0 1.9049471895720984 0 0.25 0 {I|L}PES{I|L}Q{I|L}{I|L}[H{I|L}];{I|L}PES{I|L}GA{I|L}{I|L}[H{I|L}];{I|L}PES{I|L}Q{I|L}H{I|L}{I|L};{I|L}PES{I|L}GA{I|L}H{I|L}{I|L} 5.6714;5.51;4.8989;4.7375 -;+;-;- + 922 + NaN NaN 156223.9 NaN 15842 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19798 81.633 NaN 274230 35 0 22684 0.261 + 33537 YIIHGPVMAAL 11 72 592.8263397171464 1183.6381265010928 2 592.3214721679688 MULTI HCD FTMS 0 0 0 19789 123650.3203125 0.7742852658893372 -5 0.10752105712890625 9 Unmodified _YIIHGPVMAAL_ ENSG00000004948|ENST00000426151|CALCR;ENST00000423724.5_1_7:93055670-93072938:-|nuORF;nc|ENSG00000004948|P30988-1|CALCR;nc|ENSG00000004948|P30988-3|CALCR;nc|ENSG00000004948|P30988-4|CALCR 15.847184025352803 0.3190053777784024 2 [Y{I|L}]{I|L}N{[CA]|SS}{I|L}VQ 9 8 52.7 0 0 4.4524 0 0 0 163.06497575362053 163.06497575362053 26.49674684468792 0 0 0 0 0.3252574989159953 1.3010299956639813 0.7302046884880937 1.2302046884880937 [Y{I|L}]{I|L}N{[CA]|SS}{I|L}VQ 4.4524 - 479 NaN NaN 133599.1 NaN 15843 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19799 81.636 NaN 266410 35 0 19164 0.261 + 21441 PWFKIIAATF 10 70 597.339635296957 1192.664717660714 2 597.3394775390625 MULTI HCD FTMS 0 0 0 19789 93059.6484375 0.6757672053605549 -1 0.01970672607421875 10 Unmodified _PWFKIIAATF_ ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 103.41943736471063 5.9292398775303266E-05 2 [WP]{M(Oxidation (M))|F}K{I|L}{I|L}AAT{M(Oxidation (M))|F} 10 0 + 93.594 0 0 7.8474 7.8474 95.562 0 0 0 22.498774732165998 52.62456261857125 22.498774732165998 31.832209667391425 0 2.1989700043360187 1.5228787452803376 0.5 0.5 + + [WP]{M(Oxidation (M))|F}K{I|L}{I|L}AAT{M(Oxidation (M))|F};[WP]{M(Oxidation (M))|F}K{I|L}{I|L}KD{M(Oxidation (M))|F};[WP]{M(Oxidation (M))|F}K{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F} 7.8474;5.1784;4.3377 +;-;- + 324 NaN NaN 145901.1 NaN 15844 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19800 81.64 NaN 99648 35 0 31419 0.264 + 21009 PLNVDLVL 8 47 441.76845900555986 881.5223650779197 2 441.7684326171875 MULTI HCD FTMS 0 0 0 19789 52568.25390625 0.010853609715480215 20 -0.5814208984375 11 Unmodified _PLNVDLVL_ REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF 11.640296217721598 0.50814828952472 2 V{I|L} 2 -1 30.217 0 0 3.4278 0 0 651.3580189435562 0 651.3580189435562 0 15.612431371158735 0 0 0 0.9247425010840047 0 0 0 V{I|L} 3.4278 + + 11 NaN NaN 111869.2 NaN 15845 3953 19789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19802 81.645 NaN 241120 35 0 19034 0.327 + 27673 TALNLFFKL 9 70 533.8184603104121 1065.622367687624 2 533.8186645507812 MULTI HCD FTMS 0 0 0 19801 45887.53515625 0.010134249054928858 52 -1.4553680419921875 1 Unmodified _TALNLFFKL_ ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA 67.83816525789305 0.009787749748478139 2 [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 9 0 + 57.819 0 0 5.4259 5.4259 90.976 0 0 0 10.132192780232785 42.10077508221467 10.132192780232785 25.84630327004689 0 2.298455006504028 0 0.5994850021680094 1.1549471895720984 + + [TA]{I|L}N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};[TA]{I|L}GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS][{I|L}A]{M(Oxidation (M))|F}K{I|L};[YV]{[NV]|[RG]}[{I|L}A]{M(Oxidation (M))|F}K{I|L};[TA][KP][YV]{M(Oxidation (M))|F}K{I|L} 5.4259;3.0004;2.4593;2.4138;0.90567 +;-;-;-;- + 393 NaN NaN 128831.1 NaN 15846 3954 19801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19803 81.649 NaN 150950 35 0 34142 0.261 + 17204 LYNDPFFPLS 10 51 606.8007917785204 1211.5870306238407 2 606.3007202148438 MULTI HCD FTMS 0 0 0 19801 44860.78125 0.5536669353278089 2 -0.06247711181640625 2 Unmodified _LYNDPFFPLS_ ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181;TMEM181-HP1BP3|1|fusion 6.2057823575117 0.44245551207394906 2 M{M(Oxidation (M))|F} 2 9 18.583 0 0 1.5338 0 0 915.4874745099625 0 915.4874745099625 0 11.505149978319906 0 0 0 0 0 0 0 M{M(Oxidation (M))|F} 1.5338 - 14 NaN NaN 120998.9 NaN 15847 3954 19801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19804 81.653 NaN 129210 35 0 13868 0.261 + 22782 QYLDISVFKF 10 51 630.3372498124804 1258.6599466917608 2 630.336669921875 MULTI HCD FTMS 0 0 0 19801 23066.57421875 0.3742075239055397 2 -0.06247711181640625 3 Unmodified _QYLDISVFKF_ ENSG00000174125|ENST00000308979|TLR1 7.101721422024254 0.4377131641736035 2 QD{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 5 6 19.208 0 0 1.5261 0 0 611.3674183576187 0 611.3674183576187 0 13.723637474483468 0 0 0 0 0 0 0 QD{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 1.5261 - 58 NaN NaN 128079 NaN 15848 3954 19801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19805 81.656 NaN 178390 35 0 70856 0.264 + 8113 GLIAELLSL 9 40 464.78921777002944 927.5638826068589 2 464.7892761230469 MULTI HCD FTMS 0 0 0 19801 22795.94921875 0.27377637491659945 5 -0.13855743408203125 4 Unmodified _GLIAELLSL_ REV__ENST00000491322.1_1_1:182358907-182359054:-|nuORF 24.020572477871973 0.15282392193088168 2 {[VA]|[{I|L}G]}E[{I|L}A]{I|L}{I|L}S{I|L} 9 -1 + 40.409 0 0 4.3565 4.3565 90.288 0 0 0 0.9493469338650229 31.737344313510505 0.9493469338650229 40.40948200479491 0 1.1747425010840047 0 0 0 {[VA]|[{I|L}G]}E[{I|L}A]{I|L}{I|L}S{I|L} 4.3565 - 72 NaN NaN 133154.4 NaN 15849 3954 19801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19806 81.659 NaN 98421 35 0 17541 0.261 + 30597 VPASSSLPLL 10 41 492.2921700133896 982.5697870935792 2 492.2922058105469 MULTI HCD FTMS 0 0 0 19801 29771.587890625 0.6029257957283589 -1 0.03954315185546875 5 Unmodified _VPASSSLPLL_ REV__USP29|p.P548L|1|0.27|ENSG00000131864|chr19:57130318-57130318|C/T|missense_variant 10.073929032068715 0.4168838835836452 2 {I|L}{I|L} 2 -1 25.969 0 0 2.643 0 0 738.3917011330208 0 738.3917011330208 0 22.47425010840047 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.643 + + 28 NaN NaN 100809.2 NaN 15850 3954 19801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19807 81.663 NaN 86930 35 0 7609.4 0.261 + -1 WHCDMLADYL 10 46 641.7650525242742 1281.5155521153483 2 642.326416015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WHCDM(Oxidation (M))LADYL_ REV__ENSG00000180098|ENST00000373830|TRNAU1AP;REV__ENST00000491577.5_1_1:28887839-28904145:+|nuORF;REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP 6.2057823575117 0.44245551207394906 2 NY{I|L} 3 -1 26.682 0 0 2.0821 0 0 873.3166371076187 0 873.3166371076187 0 19.69273760456403 0 0 0 0.5 0 0 0 NY{I|L} 2.0821 - 11 NaN NaN 114251.9 NaN 15851 3954 19801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19809 81.668 NaN 1685900 35 0 326610 0.327 + 30114 VFYPYPQYF 9 77 612.2924531755696 1222.570353417939 2 612.2924194335938 MULTI HCD FTMS 0 0 0 19808 813244.8125 0.7880674370056832 2 -0.0591278076171875 1 Unmodified _VFYPYPQYF_ ENSG00000103160|ENST00000219439|HSDL1 97.07464715276575 0.004340583992084827 2 NYPYPQY{M(Oxidation (M))|F} 8 2 69.959 0 0 5.7223 0 0 132.08731546553605 0 132.08731546553605 0 40.406075122407685 0 0 0 2.774227503252014 0 0 1.0356668758921828 NYPYPQY{M(Oxidation (M))|F} 5.7223 - 503 + NaN NaN 349336.8 NaN 15852 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19810 81.672 NaN 1796800 35 0 380390 0.262 + 32136 VYSIISVQL 9 74 511.29993478353236 1020.5853166338647 2 511.300048828125 MULTI HCD FTMS 0 0 0 19808 948647.3125 0.2840793850883429 -4 0.10504913330078125 2 Unmodified _VYSIISVQL_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant 149.91393105778798 8.917243180786556E-06 2 [YV]S{I|L}{I|L}SVQ{I|L} 9 0 + 98.114 0 0 9.6135 9.6135 93.9 0 0 0 12.840547268788285 12.840547268788285 12.840547268788285 9.208187539523749 0 2.642159058960253 1.154901959985743 2.1549471895720984 0 + + [YV]S{I|L}{I|L}SVQ{I|L};[YV]S{I|L}{I|L}SV[AG]{I|L};[VS]Y{I|L}{I|L}SVQ{I|L};[VS]Y{I|L}{I|L}SV[AG]{I|L};[VS]{I|L}{I|L}YSVQ{I|L};[VS]{I|L}{I|L}YSV[AG]{I|L} 9.6135;8.7112;8.1088;7.2066;5.716;4.8138 +;-;-;-;-;- + 814 NaN NaN 359548.5 NaN 15853 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19811 81.676 NaN 991270 35 0 215990 0.261 + 26633 SWPDWALPRL 10 63 620.827283562001 1239.6400141908018 2 620.827392578125 MULTI HCD FTMS 0 0 0 19808 411590.1875 0.2561130082033098 8 -0.23036956787109375 3 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 87.25819977447905 0.0012128544035916314 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 10 0 + 96.189 0 0 7.7595 7.7595 96.97 0 0 0 17.78151250383644 85.22038431917139 17.78151250383644 96.18948444925195 0 3.024227503252014 1.6989700043360187 1.2302046884880937 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}PDWA{I|L}PR{I|L} 7.7595 + + 461 NaN NaN 253302.9 NaN 15854 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19812 81.679 NaN 693600 35 0 76795 0.261 + 17903 MILELDPTF 9 65 547.7755959212911 1093.5366389093822 2 547.7758178710938 MULTI HCD FTMS 0 0 0 19808 284057.78125 0.12833376855533815 11 -0.3156280517578125 4 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 133.70201269244603 0.0003804610509361063 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 95.94 0 0 8.7734 8.7734 98.405 0 0 0 17.302046884880937 55.706611947909224 17.302046884880937 95.94003155093382 0 2.610924374808178 2 0.4247425010840047 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 8.7734 + + 596 NaN NaN 201843.9 NaN 15855 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19813 81.682 NaN 352730 35 0 38219 0.261 + 7784 FYNSGLLDTF 10 75 588.7823465717859 1175.5501402103716 2 588.7822265625 MULTI HCD FTMS 0 0 0 19808 135939.1875 0.513835893247725 3 -0.09195709228515625 5 Unmodified _FYNSGLLDTF_ ENSG00000169764|ENST00000337130|UGP2;ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2 99.75527289724121 0.00025366794806936803 2 {I|L}DT{M(Oxidation (M))|F} 4 6 55.662 0 0 4.735 0 0 681.3130240641387 0 681.3130240641387 0 35.11561899423569 0 0 0 2 0 0.8494850021680094 0 + {I|L}DT{M(Oxidation (M))|F} 4.735 + + 248 + NaN NaN 166672.2 NaN 15856 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19814 81.686 NaN 439700 35 0 24849 0.261 -1 SITILMIAAP 10 94 523.3037745104898 NaN 0 523.30322265625 PEAK HCD FTMS 0 0 0 19808 180513.6875 0.27844457690768515 31 -0.8624343872070312 6 Oxidation (M) _SITILM(Oxidation (M))IAAP_ GRM8|p.F637I|1|0.08|ENSG00000179603|chr7:126533473-126533473|A/T|missense_variant 10.823927491677226 0.33092050725491123 2 QQVTK 5 -1 13.047 0 0 1.249 0 0 132.116263765317 325.1193941705688 457.2356579358858 0 0 0 0 0 0 0 0 0.3494850021680094 QQVTK 1.249 - 451 + NaN NaN 165561.2 NaN 15857 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19815 81.689 NaN 566780 35 0 83272 0.261 + 17198 LYMPKLLYF 9 60 594.3303961858633 1186.6462394385264 2 594.3301391601562 MULTI HCD FTMS 0 0 0 19808 145138.609375 0.15035256377261236 -4 0.10504913330078125 7 Unmodified _LYMPKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 39.957323273324995 0.06554068735427583 2 [Y{I|L}][K{I|L}]PM{I|L}Y{M(Oxidation (M))|F} 9 4 + 58.874 0 0 4.9614 4.9614 88.323 0 0 0 8.696662315049934 34.321355998091434 8.696662315049934 11.989700043360187 0 1 1.6989700043360187 0 0 [Y{I|L}][K{I|L}]PM{I|L}Y{M(Oxidation (M))|F};[Y{I|L}][K{I|L}]PMY{I|L}{M(Oxidation (M))|F} 4.9614;3.951 -;- 98 NaN NaN 175331.2 NaN 15858 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19816 81.692 NaN 146710 35 0 41555 0.261 -1 KTHSAIQLYSM 11 48 647.8272298659551 1293.6399067987102 2 647.8272705078125 MULTI HCD FTMS 0 0 0 19808 76013.671875 1 0 0 8 Oxidation (M) _KTHSAIQLYSM(Oxidation (M))_ ENST00000510850.1_2_5:175607300-175612115:-|nuORF 2.0860074813731053 0.4097721463192591 2 S 1 -1 16.237 0 0 1.2552 0 0 840.4132049938258 363.1709078424438 1203.5841128362697 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.2552 + + 19 + NaN NaN 121561.8 NaN 15859 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19817 81.696 NaN 189470 35 0 9595.1 0.262 + 21563 PYLYDFLDA 9 66 558.7666847694474 1115.5188166056946 2 558.7666625976562 MULTI HCD FTMS 0 0 0 19808 54493.015625 0.16063808207447192 13 -0.36801910400390625 9 Unmodified _PYLYDFLDA_ ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A 24.67388899826682 0.14717941214954053 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 9 6 + 60.333 0 0 5.4085 5.4085 91.29 0 0 0 2.389465451849091 42.02607112299283 2.389465451849091 31.185625271001168 0 2.7302046884880937 2 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F};[YE][{I|L}P]{I|L}D[YG]{M(Oxidation (M))|F};[YV]TE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TP{M(Oxidation (M))|F};[YV]T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ETP{M(Oxidation (M))|F} 5.4085;2.6129;1.495;1.2926 -;-;-;- 383 NaN NaN 129877.8 NaN 15860 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19818 81.699 NaN 272170 35 0 15351 0.261 + 10087 IFFGIWLLF 9 77 578.3327674326764 1154.6509819321527 2 578.333251953125 MULTI HCD FTMS 0 0 0 19808 58466.29296875 0.5627666890384099 -13 0.34732818603515625 10 Unmodified _IFFGIWLLF_ tr|U7T3G4|U7T3G4_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00266PE=4SV=1 20.871210003555333 0.18003371494288972 2 {I|L}[MT]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6 6 37.664 0 0 3.2619 0 0 384.2483726737804 0 384.2483726737804 0 12.001962355242952 0 0 0 0.9247425010840047 0 0 0 {I|L}[MT]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.2619 - 96 NaN NaN 141745.1 NaN 15861 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19819 81.702 NaN 188910 35 0 16615 0.261 -1 VMPIIDNLF 9 63 539.2845651434391 1076.554577353678 2 539.2692260742188 MULTI HCD FTMS 0 0 0 19808 13492.07421875 0.4882903692398235 5 -0.14508819580078125 11 Oxidation (M) _VM(Oxidation (M))PIIDNLF_ tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.1857 0 0 911.4750160517234 0 911.4750160517234 0 5.774509799928715 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1857 + + 44 + NaN NaN 117159.8 NaN 15862 3955 19808 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19821 81.707 NaN 964890 35 0 69611 0.327 -1 HRGCKVDAF 9 102 545.2662564868235 1088.517960040447 2 545.7495727539062 MULTI HCD FTMS 0 0 0 19820 8358.6875 0.023002749893189664 -9 0.2389984130859375 1 Carbamidomethyl (C) _HRGC(Carbamidomethyl (C))KVDAF_ ENST00000593400.5_1_19:12790334-12790485:-|nuORF 14.838274106304384 0.23215694253501695 2 EGHH{I|L}{[DA]|[EG]}{M(Oxidation (M))|F} 8 -1 30.865 0 0 2.8355 0 0 164.1134789804094 0 164.1134789804094 0 20.86528349429198 0 0 0 0 0 1.1479400086720377 0 EGHH{I|L}{[DA]|[EG]}{M(Oxidation (M))|F} 2.8355 - 607 + NaN NaN 251653.5 NaN 15863 3956 19820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19822 81.712 NaN 131440 35 0 10920 0.261 -1 LLLMLIIDF 9 62 553.82984672536 1105.6451405175198 2 553.8297729492188 MULTI HCD FTMS 0 0 0 19820 78587.7578125 0.5680197975075243 -3 0.102020263671875 2 Oxidation (M) _LLLM(Oxidation (M))LIIDF_ ENSG00000198018|ENST00000370489|ENTPD7 2.0597508629832335 0.3354026079994024 2 RWD{M(Oxidation (M))|F} 4 -1 16.542 0 0 1.4962 0 0 483.37153319505734 0 483.37153319505734 0 5.344406447039063 0 0 0 0 0 0 0 RWD{M(Oxidation (M))|F} 1.4962 - 65 + NaN NaN 110208.1 NaN 15864 3956 19820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19823 81.715 NaN 110790 35 0 9558.8 0.261 + 32091 VYRKRRAN 8 54 531.8170302062131 1061.619507479226 2 531.8172607421875 MULTI HCD FTMS 0 0 0 19820 97252.3515625 0.6249625849851751 4 -0.10555267333984375 3 Unmodified _VYRKRRAN_ CD93|p.K612N|1|0.26|ENSG00000125810|chr20:23084357-23084357|C/G|missense_variant 5.760428011301431 0.5334459684533844 2 [YV]R 3 5 19.041 0 0 1.7936 0 0 0 640.3741516044792 640.3741516044792 4.436974992327126 0 0 0 0 0 1.3979400086720375 0 0 + [YV]R 1.7936 + + 47 NaN NaN 103643.9 NaN 15865 3956 19820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19824 81.718 NaN 299500 35 0 59729 0.261 + 12275 KLPALFFL 8 35 474.7995344481951 947.5845159631903 2 474.7994384765625 MULTI HCD FTMS 0 0 0 19820 94242.53125 0.48743471194867305 -2 0.06247711181640625 4 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 46.92087301778293 0.1468278106890452 2 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 46.375 0 0 4.894 4.894 91.212 0 0 0 2.284496027691617 38.30275432461626 2.284496027691617 46.374722956624694 0 2.242992819099939 0 0 0 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4.894 + + 39 NaN NaN 147934.4 NaN 15866 3956 19820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19825 81.722 NaN 215300 35 0 24751 0.261 + 7024 FPYQHRNY 8 64 562.7673104643302 1123.5200679954603 2 562.76708984375 MULTI HCD FTMS 0 0 0 19820 57197.6796875 0.9446584780299222 1 -0.01959228515625 5 Unmodified _FPYQHRNY_ REV__ENSG00000122512|ENST00000265849|PMS2;REV__ENST00000486256.5_1_7:6774947-6777299:+|nuORF;REV__nc|ENSG00000122512|P54278-3|PMS2 19.438996006549623 0.45076845602799126 2 {I|L}MY 3 -1 46.471 0 0 4.1362 0 0 0 713.3129055704993 713.3129055704993 40.98644688804811 0 0 0 0 0.805462187404089 1.6989700043360187 0 0 {I|L}MY 4.1362 - 31 + NaN NaN 138270.7 NaN 15867 3956 19820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19827 81.727 NaN 917380 35 0 37906 0.327 + 26382 SSRQKLSPV 9 93 501.2906072263501 1000.5666615195003 2 501.29071044921875 MULTI HCD FTMS 0 0 0 19826 820260.25 0.4640182131590442 28 -0.7771682739257812 1 Unmodified _SSRQKLSPV_ REV__ENSG00000258366|ENST00000360203|RTEL1;REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF;REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF;REV__nc|ENSG00000258366|Q9NZ71-2|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-4|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-5|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-7|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-8|RTEL1;REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1;REV__nc|ENSG00000258366|Q9NZ71|RTEL1 6.2057823575117 0.30397260197431997 2 Q 1 -1 12.474 0 0 1.2467 0 0 458.2728828287264 411.22332397466266 869.496206803389 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.2467 + + 142 + NaN NaN 229326.4 NaN 15868 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19828 81.731 NaN 436270 35 0 51206 0.261 + 13591 KYPENFFLL 9 64 585.8131605635726 1169.6117681939452 2 585.8135986328125 MULTI HCD FTMS 0 0 0 19826 214205.34375 0.0010888647626187636 232 -5.467063903808594 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 58.139 0 0 4.9708 4.9708 86.915 0 0 0 2.3367404008160264 36.71204671777453 2.3367404008160264 9.208187539523749 0 2.1549471895720984 0 0 0.9476212463643423 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}KTY[KQ]DK 4.9708;4.1835;3.5476;2.7603;2.6245;1.8372;0.49831 +;-;-;-;-;-;- + 279 NaN NaN 165464 NaN 15869 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19829 81.735 NaN 456390 35 0 62721 0.261 + 5381 FGRNAREALP 10 71 565.808214166103 1129.6018753990058 2 566.2982788085938 MULTI HCD FTMS 0 0 0 19826 13145.837890625 0.27663979924112053 -10 0.2585906982421875 3 Unmodified _FGRNAREALP_ REV__ENSG00000138109|ENST00000260682|CYP2C9;REV__ENSG00000165841|ENST00000371321|CYP2C19;REV__nc|ENSG00000138109|P11712-2|CYP2C9 8.745405648335112 0.42901288225909884 2 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 8 -1 28.901 0 0 2.5585 0 0 164.10145514622792 0 164.10145514622792 0 7.575156255085389 0 0 0 0 0 0.3494850021680094 0 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 2.5585 - 459 + NaN NaN 154473.2 NaN 15870 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19830 81.738 NaN 523830 35 0 81528 0.261 + 32155 VYSNSIYELL 10 64 600.8109305825458 1199.6073082318915 2 600.81103515625 MULTI HCD FTMS 0 0 0 19826 251394.5625 0.4460731538533197 -3 0.08206939697265625 4 Unmodified _VYSNSIYELL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 110.79276546118962 5.020237097528524E-05 2 NS{I|L}YE{I|L}{I|L} 7 3 97.656 0 0 8.1407 0 0 349.1639576642594 0 349.1639576642594 0 81.67017533604145 0 0 0 2.6989700043360187 0 1.5044321917401078 1.2302046884880937 + NS{I|L}YE{I|L}{I|L} 8.1407 + + 291 NaN NaN 175945.2 NaN 15871 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19831 81.741 NaN 273420 35 0 35021 0.261 -1 MPVPEILQL 9 50 528.2938600174357 1054.5731671016713 2 528.2938842773438 MULTI HCD FTMS 0 0 0 19826 136027.84375 0.5155162065394625 5 -0.14499664306640625 5 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 39.94969957227396 0.06557568441294001 2 {I|L}{I|L}Q{I|L} 4 -1 44.24 0 0 4.1951 0 0 569.2520192737892 0 569.2520192737892 0 33.782672239435314 0 0 0 1.2302046884880937 0 0 0 {I|L}{I|L}Q{I|L} 4.1951 + + 70 NaN NaN 133340.3 NaN 15872 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19832 81.745 NaN 322040 35 0 33220 0.261 + 32675 WPDWALPRL 9 65 577.3108655319584 1152.6071781307166 2 577.311279296875 MULTI HCD FTMS 0 0 0 19826 65903.8828125 0.13606736292559596 -8 0.2195587158203125 6 Unmodified _WPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 47.748688679222035 0.03472022231463587 2 WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 6 3 59.869 0 0 5.1942 0 0 0 381.2249912695007 381.2249912695007 41.90975163625181 0 0 0 0 1.5189301784845295 1.3010299956639813 0 0.3252574989159953 + WPD{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 5.1942 + + 90 + NaN NaN 132894.8 NaN 15873 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19833 81.748 NaN 128300 35 0 19997 0.262 -1 0 44 468.72324745046205 935.4319419677241 2 468.7232666015625 MULTI HCD FTMS 0 0 0 19826 44756.2265625 0.4824868907397555 -1 0.01959228515625 7 NaN NaN 2 Q 1 -1 7.0116 0 0 0.74956 0 0 396.2847646368463 408.0720308893188 804.3567955261651 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.74956 - 10 + NaN NaN 111389.7 NaN 15874 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19834 81.751 NaN 128950 35 0 5888.3 0.261 -1 0 68 479.27746304091426 956.5403731486285 2 479.2773132324219 MULTI HCD FTMS 0 0 0 19826 52269.1484375 0.3690391915265929 -5 0.14131927490234375 8 NaN NaN 2 V 1 -1 4.2917 0 0 0.44867 0 0 542.2938044003848 312.1512850397094 854.4450894400943 0 0 0 0 0 0.3807196863200844 0 0 0 V 0.44867 - 30 + NaN NaN 106345.9 NaN 15875 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19835 81.755 NaN 259790 35 0 11889 0.261 + 21674 PYYPSPGVLF 10 78 570.2927044243268 1138.5708559154534 2 570.2926025390625 MULTI HCD FTMS 0 0 0 19826 42241.59375 0.33627903479408106 4 -0.11209869384765625 9 Unmodified _PYYPSPGVLF_ ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;TMEM181-HP1BP3|1|fusion 19.256988751693697 0.33098864134661865 2 ERP{I|L}{M(Oxidation (M))|F} 5 7 40.969 0 0 3.5983 0 0 478.221483299025 0 478.221483299025 0 26.245980483695774 0 0 0 1 0 0 0 ERP{I|L}{M(Oxidation (M))|F} 3.5983 - 919 NaN NaN 133870.9 NaN 15876 3957 19826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19837 81.76 NaN 728610 35 0 165990 0.327 + 21602 PYNPLWAQL 9 61 551.2897008140378 1100.5648486948755 2 551.7766723632812 MULTI HCD FTMS 0 0 0 19836 29943.23828125 0.07123067894285681 20 -0.551239013671875 1 Unmodified _PYNPLWAQL_ ENSG00000052795|ENST00000264433|FNIP2;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 18.1463463914782 0.20357593197100715 2 E{M(Oxidation (M))|F}Y{I|L}AS{[QN]|[E{I|L}]|[KN]} 8 7 51.904 0 0 4.7161 0 0 130.1216913418021 0 130.1216913418021 0 32.18092758854482 0 0 0 0 0 2.1549471895720984 0 E{M(Oxidation (M))|F}Y{I|L}AS{[QN]|[E{I|L}]|[KN]} 4.7161 - 672 + NaN NaN 214291.4 NaN 15877 3958 19836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19838 81.765 NaN 541780 35 0 85282 0.261 + 12249 KLHAMLSMI 9 80 522.2910846510752 1042.5676163689502 2 522.2913208007812 MULTI HCD FTMS 0 0 0 19836 388580.6875 0.930878297289627 -1 0.03282928466796875 2 Unmodified _KLHAMLSMI_ ENSG00000141258|ENST00000268989|SGSM2;ENST00000575367.1_1_17:2270608-2274710:+|nuORF 43.85829265575387 0.04763305254408404 2 VYS{I|L}{I|L}SV 7 7 82.376 0 0 7.9013 0 0 0 278.11173202504 278.11173202504 53.93375772157654 0 0 0 0 2.2346368802282015 1.6989700043360187 0.6989700043360187 0 VYS{I|L}{I|L}SV 7.9013 - 565 + NaN NaN 176027.1 NaN 15878 3958 19836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19839 81.768 NaN 430310 35 0 35636 0.261 + 5854 FPDFFTRVAL 10 72 606.8239710037229 1211.6333890742458 2 606.8243408203125 MULTI HCD FTMS 0 0 0 19836 149553.78125 0.990970481914925 -1 0.03282928466796875 3 Unmodified _FPDFFTRVAL_ ENSG00000196415|ENST00000234347|PRTN3 48.07275321834293 0.08479850339886455 2 {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{M(Oxidation (M))|F}TRVA{I|L} 10 0 + 55.059 0 0 4.5442 4.5442 87.783 0 0 0 28.600592417808016 4.476212463643421 4.476212463643421 12.232952147072552 0 2.5673851849885576 0 0 0 + + {M(Oxidation (M))|F}PD{M(Oxidation (M))|F}{M(Oxidation (M))|F}TRVA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A]{M(Oxidation (M))|F}{I|L};[DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[{I|L}A]{M(Oxidation (M))|F}{I|L} 4.5442;3.5346;1.4534 +;-;- + 395 + NaN NaN 158295.1 NaN 15879 3958 19836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19840 81.772 NaN 185300 35 0 50547 0.261 + 16130 LPTHIWHF 8 54 525.7804185521196 1049.5462841710391 2 525.78076171875 MULTI HCD FTMS 0 0 0 19836 86202.734375 0.27618826823814513 6 -0.17790985107421875 4 Unmodified _LPTHIWHF_ REV__ENSG00000166448|ENST00000339375|TMEM130;REV__nc|ENSG00000166448|Q8N3G9|TMEM130 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 -1 21.99 0 0 2.0952 0 0 884.4673789970142 0 884.4673789970142 0 16.505149978319906 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 2.0952 + + 3 + NaN NaN 129726.7 NaN 15880 3958 19836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19841 81.775 NaN 137080 35 0 12487 0.261 + -1 YNREEIFAMG 10 50 623.2829264576867 1244.5512999821733 2 623.2836303710938 MULTI HCD FTMS 0 0 0 19836 46856.4140625 0.41955661717502474 5 -0.1384124755859375 5 Oxidation (M) _YNREEIFAM(Oxidation (M))G_ REV__ENSG00000182866|ENST00000336890|LCK;REV__ENST00000469765.5_1_1:32745435-32751314:+|nuORF;REV__LCK|p.L453Rfs*19|1|0.06|ENSG00000182866|chr1:32285541-32285542|-/CCGACCCAGACAGAGACCACTCACT|frameshift_variant;REV__nc|ENSG00000182866|P06239-3|LCK 6.2057823575117 0.44245551207394906 2 [YN]{I|L}Y[WR]C 7 -1 38.701 0 0 3.1097 0 0 0 243.11659361620664 243.11659361620664 31.711594421910974 0 0 0 0 0.9247425010840047 1.5228787452803376 0 0 [YN]{I|L}Y[WR]C 3.1097 - 55 NaN NaN 112157.9 NaN 15881 3958 19836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19842 81.778 NaN 181780 35 0 17904 0.261 + 3272 EEDHSEFYLN 10 55 641.7650525242742 1281.5155521153483 2 641.7656860351562 MULTI HCD FTMS 0 0 0 19836 116759.96875 0.7216299874237353 -2 0.05242156982421875 6 Unmodified _EEDHSEFYLN_ PIK3C2G|p.Q386E|1|0.16|ENSG00000139144|chr12:18320980-18320980|C/G|missense_variant 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F}NY{I|L} 4 8 51.186 0 0 3.9941 0 0 726.2468724065313 0 726.2468724065313 0 20.243500300354142 0 0 0 1.5 0 0 0.4247425010840047 {M(Oxidation (M))|F}NY{I|L} 3.9941 - 61 NaN NaN 119476.1 NaN 15882 3958 19836 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19844 81.783 NaN 714790 35 0 119270 0.327 -1 SQACVHPYI 9 53 537.7555601248617 1073.4965673165234 2 537.7557983398438 MULTI HCD FTMS 0 0 0 19843 211101.0625 0.8971531547420705 1 -0.02947235107421875 1 Carbamidomethyl (C) _SQAC(Carbamidomethyl (C))VHPYI_ ENST00000517791.1_1_5:149785806-149786884:-|nuORF 7.289230182591677 0.29575926068275815 2 SQA 3 -1 23.188 0 0 2.16 0 0 0 784.3340542956714 784.3340542956714 16.760912590556813 0 0 0 0 0 0 0 0 SQA 2.16 + + 25 + NaN NaN 199261.3 NaN 15883 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19845 81.788 NaN 533690 35 0 104500 0.261 + 11327 IYMDTLNIF 9 76 573.2811960784773 1144.5478392237544 2 573.2810668945312 MULTI HCD FTMS 0 0 0 19843 273739.40625 0.320798407313432 -6 0.1781005859375 2 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 85.64151623876279 0.004640175941193596 2 DT{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 80.425 0 0 7.0268 0 0 423.18271984358427 0 423.18271984358427 0 61.01219677964764 0 0 0 2.6549471895720984 0 1.1747425010840047 0.4247425010840047 + DT{I|L}N{I|L}{M(Oxidation (M))|F} 7.0268 + + 957 NaN NaN 178591.7 NaN 15884 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19846 81.791 NaN 184480 35 0 13564 0.261 + 21442 PWFKIIAATF 10 67 597.339635296957 1192.664717660714 2 597.3399047851562 MULTI HCD FTMS 0 0 0 19843 64096.79296875 0.4654488963189755 5 -0.1542510986328125 3 Unmodified _PWFKIIAATF_ ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 31.26834338654808 0.2211790902911672 2 C(Carbamidomethyl (C))AA[{M(Oxidation (M))|F}T] 5 6 27.218 0 0 2.2822 0 0 624.4279041974625 0 624.4279041974625 0 -1.7339374311232802 -1.7339374311232802 0 0 0.8494850021680094 0 0 0 C(Carbamidomethyl (C))AA[{M(Oxidation (M))|F}T] 2.2822 - 80 NaN NaN 117245.6 NaN 15885 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19847 81.794 NaN 277100 35 0 39631 0.261 + 26344 SSFFDDPVL 9 55 513.7425587521955 1025.4705645711908 2 513.7423095703125 MULTI HCD FTMS 0 0 0 19843 104595.171875 0.8850608609896218 1 -0.02947235107421875 4 Unmodified _SSFFDDPVL_ ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1 30.636539890814138 0.10832830463492794 2 DDPV{I|L} 5 4 48.857 0 0 4.7643 0 0 468.2000907532035 0 468.2000907532035 0 29.1908407815562 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + DDPV{I|L} 4.7643 + + 91 NaN NaN 128385.8 NaN 15886 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19848 81.798 NaN 156670 35 0 19339 0.261 + 23158 RFILNLPTF 9 56 560.8296409146644 1119.6447288961288 2 561.3319091796875 MULTI HCD FTMS 0 0 0 19843 57392.63671875 0.01925075173306247 53 -1.4872512817382812 5 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 19.256988751693697 0.19398022840297344 2 {I|L}TP{M(Oxidation (M))|F} 4 6 40.962 0 0 3.6585 0 0 643.3801242592132 0 643.3801242592132 0 33.79493455131808 0 0 0 1.3807196863200843 0 0.4247425010840047 0 {I|L}TP{M(Oxidation (M))|F} 3.6585 - 98 + NaN NaN 116007.5 NaN 15887 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19849 81.801 NaN 248070 35 0 28714 0.261 -1 FPTVVIYVM 9 54 542.7911424624269 1083.5677319916538 2 542.7911376953125 MULTI HCD FTMS 0 0 0 19843 91953.1484375 0.17125657948113315 -9 0.24683380126953125 6 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 30.224811164608877 0.11021837014094292 2 VYV{M(Oxidation (M))|F} 4 -1 45.433 0 0 4.1929 0 0 557.3078480451187 0 557.3078480451187 0 27.641368885835217 0 0 0 1.5 0 0 0 VYV{M(Oxidation (M))|F} 4.1929 - 101 NaN NaN 113729.8 NaN 15888 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19850 81.804 NaN 60829 35 0 11355 0.262 -1 APILSINL 8 39 441.76845900555986 881.5223650779197 2 441.7683410644531 MULTI HCD FTMS 0 0 0 19843 33289.83984375 0.006873253385955578 26 -0.7206802368164062 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))APILSINL_ nc|ENSG00000162688|P35573-3|AGL 2.302733041254933 0.5385759549224092 2 MHH 3 -1 7.4473 0 0 0.84482 0 0 458.348061954676 0 458.348061954676 0 7.447274948966937 0 0 0 0 0 0 0 MHH 0.84482 - 11 + NaN NaN 95672.8 NaN 15889 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19851 81.808 NaN 137120 35 0 12974 0.261 + 12705 KWRGQSVL 8 51 487.2816395750664 972.5487262169328 2 487.7912902832031 MULTI HCD FTMS 0 0 0 19843 16069.1796875 0.5627088805592194 -5 0.13855743408203125 8 Unmodified _KWRGQSVL_ REV__ENSG00000184571|ENST00000616349|PIWIL3;REV__nc|ENSG00000184571|Q7Z3Z3|PIWIL3 14.838274106304384 0.4846187982323419 2 SV{I|L} 3 -1 28.416 0 0 2.9218 0 0 655.3541472691755 0 655.3541472691755 0 21.42667503568731 0 0 0 0.5 0 0.5 0 SV{I|L} 2.9218 + + 27 NaN NaN 102517.6 NaN 15890 3959 19843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19853 81.813 NaN 3595300 35 0 781970 0.327 + 32137 VYSIISVQL 9 73 511.29993478353236 1020.5853166338647 2 511.30023193359375 MULTI HCD FTMS 0 0 0 19852 2509301.75 0.7514287857544558 1 -0.0261383056640625 1 Unmodified _VYSIISVQL_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant 163.03601447609117 7.615514112917802E-09 2 [YV]S{I|L}{I|L}SVQ{I|L} 9 0 + 102.28 0 0 10.022 10.022 90.235 0 0 0 1.588709367037282 16.137444175349316 1.588709367037282 1.588709367037282 0 2.642159058960253 1.2218487496163564 2.504432191740108 0 + + [YV]S{I|L}{I|L}SVQ{I|L};[VS]Y{I|L}{I|L}SVQ{I|L};[YV]S{I|L}{I|L}SV[AG]{I|L};[VS]Y{I|L}{I|L}SV[AG]{I|L};[VS]{I|L}{I|L}YSVQ{I|L};[YV][{I|L}T]VSVQ{I|L};[VS]{I|L}{I|L}YSV[AG]{I|L};[YV][{I|L}T]VSV[AG]{I|L} 10.022;9.8658;9.1193;8.9636;7.0857;7.0177;6.1835;6.1154 +;-;-;-;-;-;-;- + 634 NaN NaN 441846.5 NaN 15891 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19854 81.817 NaN 604620 35 0 92565 0.261 + 30115 VFYPYPQYF 9 72 612.2924531755696 1222.570353417939 2 612.292236328125 MULTI HCD FTMS 0 0 0 19852 301923.15625 0.29257586923569084 7 -0.2000579833984375 2 Unmodified _VFYPYPQYF_ ENSG00000103160|ENST00000219439|HSDL1 57.47134341890925 0.0211188941628804 2 [YV]{M(Oxidation (M))|F}PY[QP]Y{M(Oxidation (M))|F} 9 2 + 60.34 0 0 4.9355 4.9355 83.798 0 0 0 3.7371250542002343 9.916440611282624 3.7371250542002343 3.7371250542002343 0 1.9247425010840047 1.3010299956639813 0 0 [YV]{M(Oxidation (M))|F}PY[QP]Y{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPY[QP]Y{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]YP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]Y[SG]YP{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}PY[SG]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]YPY[SG]{M(Oxidation (M))|F}P{M(Oxidation (M))|F};[YV][YQ]YP{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[SG]Y{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[QV]|[N{I|L}]|[RA]|[KV]};[{M(Oxidation (M))|F}V]Y[SG]Y{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[QV]|[N{I|L}]|[RA]|[KV]};[YV][YQ]Y{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{[QV]|[N{I|L}]|[RA]|[KV]} 4.9355;4.6298;3.8198;3.7129;3.7118;3.6049;3.3471;2.5939;2.2882;1.6506 -;+;-;-;-;-;-;-;-;- + 437 NaN NaN 179203.2 NaN 15892 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19855 81.821 NaN 949760 35 0 69154 0.261 + 10285 IKQVLVENF 9 106 545.316981596914 NaN 0 545.3169555664062 PEAK HCD FTMS 0 0 0 19852 196454.4375 0.7267518139194845 3 -0.0852813720703125 3 Unmodified _IKQVLVENF_ ENSG00000059377|ENST00000448866|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-2|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1;nc|ENSG00000059377|P24557-4|TBXAS1 14.838274106304384 0.2220448417561729 2 NE{I|L}S{M(Oxidation (M))|F}AP 7 8 47.217 0 0 4.3373 0 0 165.17752901238424 162.05597864322502 327.2335076556093 0 0 0 0 0 0.3807196863200844 0 1.3226825097560422 0.3252574989159953 NE{I|L}S{M(Oxidation (M))|F}AP 4.3373 - 1443 + NaN NaN 234151.3 NaN 15893 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19856 81.824 NaN 343890 35 0 26233 0.261 + 11340 IYNETITDLL 10 82 597.8163817268465 1193.618210520493 2 597.8167114257812 MULTI HCD FTMS 0 0 0 19852 62750.05859375 0.8674426880330388 1 -0.0261383056640625 4 Unmodified _IYNETITDLL_ ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE 55.23464941255904 0.058752269732683056 2 [Y{I|L}]NET{I|L}TD{I|L}{I|L} 10 0 + 61.201 0 0 5.1273 5.1273 86.376 0 0 0 18.863781092484686 42.78450353020801 18.863781092484686 9.164539485499255 0 1.3411290632962718 1.3979400086720375 0.4247425010840047 0 + + [Y{I|L}]NET{I|L}TD{I|L}{I|L};[Y{I|L}]GGET{I|L}TD{I|L}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]ET{I|L}TD{I|L}{I|L};[{M(Oxidation (M))|F}T]AAET{I|L}TD{I|L}{I|L} 5.1273;4.3595;3.1884;2.8315 +;-;-;- + 525 NaN NaN 149540.2 NaN 15894 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19857 81.827 NaN 267990 35 0 74698 0.261 -1 RHMRLNTGEK 10 60 629.3279371459483 NaN 0 629.3131713867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _RHM(Oxidation (M))RLNTGEK_ ZNF599|p.H249N|1|0.21|ENSG00000153896|chr19:34760056-34760056|G/T|missense_variant 5.731851221503515 0.33527861879838866 2 EWD{I|L} 4 -1 12.652 0 0 1.0068 0 0 166.14945231748408 544.2395536614493 710.3890059789335 0 0 0 0 0 0 0 0 0 EWD{I|L} 1.0068 - 21 + NaN NaN 130707.3 NaN 15895 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19858 81.831 NaN 192610 35 0 31866 0.262 + 25708 SIYVKFPLL 9 51 540.3304701804765 NaN 0 540.3302001953125 PEAK HCD FTMS 0 0 0 19852 8084.67919921875 0.13133681358140098 6 -0.17053985595703125 6 Unmodified _SIYVKFPLL_ ENSG00000067704|ENST00000366922|IARS2 2.302733041254933 0.2840881193086663 2 {I|L}P 2 7 9.464 0 0 0.87739 0 0 132.2180752177839 733.2681880248465 865.4862632426305 0 0 0 0 0 0 0 0 0 {I|L}P 0.87739 - 13 + NaN NaN 114661.9 NaN 15896 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19859 81.834 NaN 88379 35 0 6324.5 0.261 + 19221 NIYYPSKKMT 10 48 622.821336610463 1243.628120287726 2 623.9185180664062 MULTI HCD FTMS 0 0 0 19852 17664.646484375 0.3178862612159809 -5 0.14508819580078125 7 Unmodified _NIYYPSKKMT_ VNN1|p.H268Y|1|0.34|ENSG00000112299|chr6:132693048-132693048|G/A|missense_variant 4.897010918128616 0.4493830473644964 2 Y 1 9 9.2917 0 0 0.74715 0 0 690.3745139268934 387.1669100397094 1077.541423966603 0 0 0 0 0 0.3807196863200844 0 0 0 + Y 0.74715 + + 4 + NaN NaN 102650.5 NaN 15897 3960 19852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19861 81.839 NaN 1049200 35 0 169720 0.327 + 17199 LYMPKLLYF 9 66 594.3303961858633 1186.6462394385264 2 594.3305053710938 MULTI HCD FTMS 0 0 0 19860 641891.6875 0.6649509823440357 2 -0.05914306640625 1 Unmodified _LYMPKLLYF_ ENSG00000170786|ENST00000303749|SDR16C5;nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 54.773552608820026 0.024892918755467567 2 {I|L}YMP[K{I|L}]{I|L}Y{M(Oxidation (M))|F} 9 0 + 76.348 0 0 6.4339 6.4339 94.405 0 0 0 41.39969987625378 11.39506772603255 11.39506772603255 76.34820009305471 0 2.3494850021680094 1.6989700043360187 0 0 + + {I|L}YMP[K{I|L}]{I|L}Y{M(Oxidation (M))|F} 6.4339 + + 115 + NaN NaN 254194 NaN 15898 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19862 81.843 NaN 568630 35 0 66923 0.261 + 17904 MILELDPTF 9 59 547.7755959212911 1093.5366389093822 2 547.7758178710938 MULTI HCD FTMS 0 0 0 19860 270094.21875 0.1220252048884768 17 -0.4719696044921875 2 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 139.54400939418784 2.61670173137287E-05 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 85.032 0 0 7.7759 7.7759 94.456 0 0 0 11.63664226604736 30.94187677400525 11.63664226604736 18.979400086720375 0 2.504432191740108 2 0.7134679910804405 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{[QN]|[E{I|L}]|[KN]}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[MS]|[{M(Oxidation (M))|F}A]}E{[QN]|[E{I|L}]|[KN]}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{I|L};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{M(Oxidation (M))|F}{I|L} 7.7759;6.0403;5.9092;5.319;4.6371;4.0294;3.9163;3.1681;2.7731;2.7266 +;-;-;-;-;-;-;-;-;- + 343 NaN NaN 175682.1 NaN 15899 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19863 81.847 NaN 1134900 35 0 91484 0.261 + 31388 VYAFSIENF 9 114 545.2662564868235 1088.517960040447 2 545.266357421875 MULTI HCD FTMS 0 0 0 19860 334372.6875 0.5767493792085477 -4 0.11209869384765625 3 Unmodified _VYAFSIENF_ ENSG00000117682|ENST00000236342|DHDDS;ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-2|DHDDS;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS 152.41221235671458 6.276234901293889E-06 2 [YV]A{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F} 9 0 + 102.28 0 0 9.3959 9.3959 96.118 0 0 0 15.77734780956726 16.20506544868192 15.77734780956726 16.20506544868192 0 2.742992819099939 1.5228787452803376 1.0189301784845295 1.055462187404089 + + [YV]A{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YG]{I|L}{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YG]{I|L}{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}VS{I|L}EN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QV{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}G{[DA]|[EG]}{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}{[DS]|[MA]|[CV]|TT} 9.3959;7.9072;7.5804;7.5692;6.7807;6.5567;6.4612;6.4426;6.4062;5.4499 +;-;-;-;-;-;-;-;-;- + 3221 + NaN NaN 284599.5 NaN 15900 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19864 81.85 NaN 503940 35 0 76739 0.261 + 26634 SWPDWALPRL 10 76 620.827283562001 1239.6400141908018 2 620.8275756835938 MULTI HCD FTMS 0 0 0 19860 171470 0.10669762994925998 14 -0.3967742919921875 4 Unmodified _SWPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 51.41523569358685 0.07264263333115425 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PA[WD]{I|L}A{M(Oxidation (M))|F} 9 5 44.816 0 0 3.6152 0 0 0 163.11308097936163 163.11308097936163 32.90484985457368 0 0 0 0 1.774227503252014 1.6989700043360187 0.7742275032520141 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}PA[WD]{I|L}A{M(Oxidation (M))|F} 3.6152 - 185 NaN NaN 176387.8 NaN 15901 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19865 81.853 NaN 172720 35 0 28020 0.263 + 26488 SVAVKEEVL 9 42 487.2816395750664 972.5487262169328 2 487.28192138671875 MULTI HCD FTMS 0 0 0 19860 46911.90625 0.4849818331427508 -4 0.11209869384765625 5 Unmodified _SVAVKEEVL_ ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2 25.399314129420986 0.14091189997036632 2 [VS][{I|L}A]{[RE]|[WV]}SV 8 4 36.233 0 0 3.7255 0 0 0 128.07158376328383 128.07158376328383 21.62848732905715 0 0 0 0 0.8807196863200843 1.5228787452803376 0.8807196863200843 0 [VS][{I|L}A]{[RE]|[WV]}SV 3.7255 - 55 NaN NaN 116725.7 NaN 15902 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19866 81.857 NaN 106720 35 0 17550 0.261 + 18171 MPDIDFNL 8 32 482.72613961483887 963.4377262964778 2 482.7256164550781 MULTI HCD FTMS 0 0 0 19860 35784.97265625 0.2038248924045569 -4 0.11209869384765625 6 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 15.847184025352803 0.47719562709667024 2 D{M(Oxidation (M))|F}N{I|L} 4 4 38.047 0 0 3.9491 0 0 456.20359999824376 0 456.20359999824376 0 35.57319389984244 0 0 0 0.5 0 0 0.3494850021680094 + D{M(Oxidation (M))|F}N{I|L} 3.9491 + + 22 NaN NaN 102479.2 NaN 15903 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19867 81.86 NaN 57471 35 0 6554.5 0.261 + 2709 DVIVTPNIL 9 34 492.2921700133896 982.5697870935792 2 492.2924499511719 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _DVIVTPNIL_ REV__ENSG00000144034|ENST00000272424|TPRKB;REV__ENST00000497464.5_1_2:73957656-73964442:-|nuORF 3.2813086475875832 0.32614229037259 2 {I|L}{I|L} 2 -1 17.959 0 0 1.8277 0 0 738.3906117169937 0 738.3906117169937 0 13.354706403678875 0 0 0 0 0 0 0 {I|L}{I|L} 1.8277 + + 2 NaN NaN 105085.8 NaN 15904 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19868 81.863 NaN 151910 35 0 11985 0.261 + 252 AFFTYSTLTEI 11 48 646.8234222109024 1291.6322914886048 2 647.3263549804688 MULTI HCD FTMS 0 0 0 19860 19822.978515625 0.6356874594567307 1 -0.03289794921875 8 Unmodified _AFFTYSTLTEI_ IPO11|p.P360S|1|0.07|ENSG00000086200|chr5:62484066-62484066|C/T|missense_variant 10.799506525563784 0.36298595732910816 2 T[{I|L}T]E{I|L} 5 6 29.208 0 0 2.2613 0 0 716.3162159485217 0 716.3162159485217 0 26.10924374808178 0 0 0 1 0 0 0 + T[{I|L}T]E{I|L} 2.2613 + + 18 NaN NaN 116130.1 NaN 15905 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19869 81.867 NaN 90968 35 0 12227 0.264 + -1 PDILPQGFYCF 11 47 452.8808261801968 NaN 0 452.87042236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _PDILPQGFYC(Carbamidomethyl (C))F_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4 1.1097533296519684 0.33897209286470975 2 D{M(Oxidation (M))|F}Y 3 -1 9.9215 0 0 1.0978 0 0 97.34611093817917 378.2147310846313 475.56084202281045 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}Y 1.0978 - 6 + NaN NaN 102403.1 NaN 15906 3961 19860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19871 81.872 NaN 714910 35 0 28883 0.327 + 14848 LKEQKERA 8 90 501.2906072263501 1000.5666615195003 2 501.290771484375 MULTI HCD FTMS 0 0 0 19870 667212.375 0.3774395919406092 33 -0.91998291015625 1 Unmodified _LKEQKERA_ ENSG00000185522|ENST00000329451|LMNTD2 10.823927491677226 0.514154816617796 2 Q 1 7 11.722 0 0 1.1715 0 0 458.27289305663334 411.22332271989984 869.4962157765332 0 0 0 0 0 0.7742275032520141 0 0 0 + Q 1.1715 + + 86 + NaN NaN 198433.8 NaN 15907 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19872 81.876 NaN 881280 35 0 78961 0.261 + 2797 DYIDTIWKI 9 95 583.8084648031318 1165.6023766730634 2 583.8084716796875 MULTI HCD FTMS 0 0 0 19870 436868.6875 0.6516984261581916 -3 0.08850860595703125 2 Unmodified _DYIDTIWKI_ ENSG00000156017|ENST00000376834|CARNMT1 103.41943736471063 0.004016698775839292 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}WK{I|L} 9 0 + 114.98 0 0 9.8646 9.8646 94.068 0 0 0 16.67780549770299 16.478174818886373 16.478174818886373 9.208187539523749 0 2.610924374808178 2 1.4258337024346173 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}WK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}{[DA]|[EG]}K{I|L};[Y{I|L}]DDT{I|L}WK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}[VS]VAA;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT{I|L}{[SA]|[TG]}[VG]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}D[VP]{[CT]|[{M(Oxidation (M))|F}G]}K{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}DT[WK]{I|L}{I|L};[Y{I|L}]DD[VP]{[CT]|[{M(Oxidation (M))|F}G]}K{I|L};[MT]HHT{I|L}{[SA]|[TG]}R{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[{M(Oxidation (M))|F}V]{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L} 9.8646;9.0746;8.4338;7.362;6.7092;6.1026;4.8979;4.6717;3.0755;2.0578 +;-;-;-;-;-;-;-;-;- + 1047 NaN NaN 218696.2 NaN 15908 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19873 81.88 NaN 384860 35 0 44658 0.261 + 13592 KYPENFFLL 9 62 585.8131605635726 1169.6117681939452 2 585.8135986328125 MULTI HCD FTMS 0 0 0 19870 309773.28125 0.0015746629119933744 237 -5.568084716796875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 68.07 0 0 5.8199 5.8199 88.273 0 0 0 1.8487834533885206 55.67918449261214 1.8487834533885206 9.208187539523749 0 2.6237125054200234 0 0 1.1989700043360187 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][DG][PA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[NV]|[RG]}[PA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.8199;5.0326;4.9497;4.0718;2.9097 +;-;-;-;- + 516 NaN NaN 146345.7 NaN 15909 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19874 81.883 NaN 153860 35 0 24699 0.262 + 12276 KLPALFFL 8 40 474.7995344481951 947.5845159631903 2 474.7994384765625 MULTI HCD FTMS 0 0 0 19870 53944.77734375 0.27900945206929684 4 -0.11150360107421875 4 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 23.1484247019978 0.4234759064137959 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 4 36.938 0 0 3.8981 0 0 409.2684498517594 0 409.2684498517594 0 36.938200260161125 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.8981 + + 20 NaN NaN 117756.3 NaN 15910 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19875 81.886 NaN 85194 35 0 5241.6 0.261 + 12418 KPHLQRQR 8 49 531.8170302062131 1061.619507479226 2 531.8169555664062 MULTI HCD FTMS 0 0 0 19870 55014.26171875 0.3535323790366672 10 -0.28530120849609375 5 Unmodified _KPHLQRQR_ REV__ENSG00000185290|ENST00000329309|NUPR2 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.4586 0 0 896.5410295512949 0 896.5410295512949 0 10.880456295278407 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4586 - 15 + NaN NaN 96318.4 NaN 15911 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19876 81.89 NaN 227260 35 0 32716 0.261 + 23159 RFILNLPTF 9 69 560.8296409146644 1119.6447288961288 2 560.829345703125 MULTI HCD FTMS 0 0 0 19870 43373.89453125 0.009722525942153587 60 -1.6841506958007812 6 Unmodified _RFILNLPTF_ ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant 26.88365393820708 0.12808753336095696 2 {I|L}PT{M(Oxidation (M))|F} 4 5 37.467 0 0 3.3463 0 0 643.3816196205413 0 643.3816196205413 0 28.426003480513483 0 0 0 0.8807196863200843 0 0.4247425010840047 0 + {I|L}PT{M(Oxidation (M))|F} 3.3463 + + 124 + NaN NaN 124846.5 NaN 15912 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19877 81.893 NaN 153660 35 0 8750.2 0.261 + 6866 FPTNEEQFI 9 61 562.7673104643302 1123.5200679954603 2 563.2693481445312 MULTI HCD FTMS 0 0 0 19870 16398.09375 0.21574494157958826 3 -0.0886077880859375 7 Unmodified _FPTNEEQFI_ REV__ENSG00000132359|ENST00000254695|RAP1GAP2;REV__ENST00000574515.1_1_17:2894647-2911342:+|nuORF;REV__nc|ENSG00000132359|Q684P5-2|RAP1GAP2;REV__nc|ENSG00000132359|Q684P5-3|RAP1GAP2 10.799506525563784 0.2670509983294061 2 {M(Oxidation (M))|F}PT[HM]{I|L}{M(Oxidation (M))|F}[MT] 9 -1 + 27.118 0 0 2.4137 2.4137 86.088 0 0 0 3.441351998676584 0.12333735073724839 0.12333735073724839 12.518572025801546 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}PT[HM]{I|L}{M(Oxidation (M))|F}[MT];{M(Oxidation (M))|F}PT{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HQ{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[TA]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E;{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[HM][DV]{I|L} 2.4137;1.2994;1.2097;0.5171 -;-;-;- 204 + NaN NaN 108682.3 NaN 15913 3962 19870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19879 81.898 NaN 573720 35 0 89344 0.327 + 32156 VYSNSIYELL 10 59 600.8109305825458 1199.6073082318915 2 600.8110961914062 MULTI HCD FTMS 0 0 0 19878 286089.21875 0.5076351645085593 3 -0.08525848388671875 1 Unmodified _VYSNSIYELL_ ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF 110.79276546118962 5.020237097528524E-05 2 NS{I|L}YE{I|L}{I|L} 7 3 98.721 0 0 8.2295 0 0 349.16215712715 0 349.16215712715 0 64.10682909697528 0 0 0 2.7302046884880937 0 1.1549471895720984 1.6549471895720984 + NS{I|L}YE{I|L}{I|L} 8.2295 + + 329 NaN NaN 179714.2 NaN 15914 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19880 81.902 NaN 811290 35 0 76130 0.261 + 32676 WPDWALPRL 9 90 577.3108655319584 1152.6071781307166 2 577.3115844726562 MULTI HCD FTMS 0 0 0 19878 360926.8125 0.7451815809659891 -2 0.05914306640625 2 Unmodified _WPDWALPRL_ ENSG00000152137|ENST00000281938|HSPB8 88.95385435242217 0.004553379958619559 2 WPDWA{I|L}PR{I|L} 9 0 + 78.893 0 0 6.8447 6.8447 86.77 0 0 0 19.41105783720844 3.2660625688767198 3.2660625688767198 3.2660625688767198 0 2.0969100130080562 1.6989700043360187 0 0.9049471895720985 + + WPDWA{I|L}PR{I|L};WPDWA{I|L}{I|L}[RP];WPDW{I|L}APR{I|L};WPDW{I|L}A{I|L}[RP];[WP]DWA{I|L}PR{I|L};[WP]DAW{I|L}PR{I|L};[WP]D{I|L}AWPR{I|L};[WP]DA{I|L}WPR{I|L};{[DA]|[EG]}PWW{I|L}PR{I|L};{[DA]|[EG]}PWW{I|L}{I|L}[RP] 6.8447;6.5613;6.2803;5.997;5.1606;4.855;4.3632;4.2104;3.3433;3.0599 +;-;-;-;+;-;-;-;-;- + 1059 + NaN NaN 220380.6 NaN 15915 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19881 81.906 NaN 690580 35 0 120360 0.261 + 28563 TPTSVLDYF 9 71 521.7582505821451 1041.5019482310902 2 521.7581787109375 MULTI HCD FTMS 0 0 0 19878 296699.5 0.7052367691746597 -2 0.05914306640625 3 Unmodified _TPTSVLDYF_ ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF;nc|ENSG00000035928|P35251|RFC1 92.8221339359638 0.0044520161739443126 2 E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{I|L}DY{M(Oxidation (M))|F} 8 3 + 64.32 0 0 6.1757 6.1757 93.751 0 0 0 48.39062518744797 1.1723858879261826 1.1723858879261826 64.32048784621223 0 2.3252574989159953 0 0.8494850021680094 0 E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{I|L}DY{M(Oxidation (M))|F} 6.1757 - 131 + NaN NaN 196240 NaN 15916 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19882 81.909 NaN 540770 35 0 74749 0.261 + 23666 RQAWLALSW 9 67 565.808214166103 1129.6018753990058 2 566.297607421875 MULTI HCD FTMS 0 0 0 19878 21216.267578125 0.4464731767036379 -5 0.1384124755859375 4 Unmodified _RQAWLALSW_ REV__ENST00000478328.1_1_7:127231492-127231768:+|nuORF 12.531546534597751 0.2520865569484384 2 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 8 -1 26.203 0 0 2.3197 0 0 164.10197596228323 0 164.10197596228323 0 8.244171855527966 0 0 0 0 0 0.3807196863200844 0 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 2.3197 - 425 + NaN NaN 168138.9 NaN 15917 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19883 81.913 NaN 397200 35 0 50929 0.261 + 27332 SYRELFEFF 9 60 619.2986985366466 1236.5828441400931 2 619.2978515625 MULTI HCD FTMS 0 0 0 19878 220550.3125 1 0 0 5 Unmodified _SYRELFEFF_ ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;SCNN1A-DCP1B|1|fusion;SCNN1A-DCP1B|2|fusion 45.739877483867886 0.03899552410870734 2 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 53.36 0 0 4.3151 0 0 648.3238075384934 0 648.3238075384934 0 37.39069071968309 0 0 0 1.3807196863200843 0 0.7614393726401688 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.3151 + + 190 NaN NaN 155481 NaN 15918 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19884 81.916 NaN 130380 35 0 6059.9 0.263 + 3657 ELKQVQGR 8 58 479.27746304091426 956.5403731486285 2 479.2774658203125 MULTI HCD FTMS 0 0 0 19878 122432.4453125 0.8644175768192378 1 -0.03949737548828125 6 Unmodified _ELKQVQGR_ REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant;REV__ENSG00000180777|ENST00000690538|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B 4.3292370932331545 0.5355693454741696 2 V 1 -1 7.4743 0 0 0.78138 0 0 586.3204157285098 268.1236666315063 854.4440823600162 0 0 0 0 0 0.3494850021680094 0 0 0 V 0.78138 + + 23 + NaN NaN 120346.5 NaN 15919 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19885 81.919 NaN 333610 35 0 36226 0.261 + 6207 FPENYVPTVF 10 57 606.8007917785204 1211.5870306238407 2 606.8010864257812 MULTI HCD FTMS 0 0 0 19878 85795.7734375 0.5428362733964598 -7 0.19083404541015625 7 Unmodified _FPENYVPTVF_ ENSG00000115963|ENST00000263895|RND3 18.373094154950223 0.33925629317698053 2 [Y{I|L}][VS]V[YK]DP 9 9 40.238 0 0 3.3211 0 0 0 143.99779899063597 143.99779899063597 20.773780925378276 0 0 0 0 0.9247425010840047 2 0.3252574989159953 0 [Y{I|L}][VS]V[YK]DP 3.3211 - 39 NaN NaN 137696.3 NaN 15920 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19886 81.923 NaN 214990 35 0 29368 0.261 + 20709 PFSYLFSEI 9 70 551.7769310310103 1101.5393091288206 2 551.7766723632812 MULTI HCD FTMS 0 0 0 19878 80330.4140625 0.14241631860013262 7 -0.20333099365234375 8 Unmodified _PFSYLFSEI_ ENST00000356805.8_1_2:54895724-54895814:+|nuORF 39.957323273324995 0.06554068735427583 2 DA[HQ]SAE{I|L} 8 7 54.131 0 0 4.9141 0 0 232.14158827949376 0 232.14158827949376 0 28.29181246047625 0 0 0 0.7742275032520141 0 1.1747425010840047 0 DA[HQ]SAE{I|L} 4.9141 - 881 NaN NaN 125863.6 NaN 15921 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19887 81.926 NaN 229620 35 0 21763 0.261 + 5885 FPDGSFIQNL 10 66 569.282629068764 1136.5507052043279 2 569.2828369140625 MULTI HCD FTMS 0 0 0 19878 104523.2265625 0.8511994276039715 -9 0.2533111572265625 9 Unmodified _FPDGSFIQNL_ ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 36.506200033944 0.17572556831573002 2 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}QN{I|L} 7 5 53.193 0 0 4.6803 0 0 228.11128432441564 0 228.11128432441564 0 48.58935127453748 0 0 0 1.3252574989159953 0 0 0 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}QN{I|L} 4.6803 - 269 NaN NaN 118215 NaN 15922 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19888 81.929 NaN 162550 35 0 20529 0.261 -1 MPVPEILQL 9 43 528.2938600174357 1054.5731671016713 2 528.2939453125 MULTI HCD FTMS 0 0 0 19878 55226.96875 0.20929830719803236 11 -0.318115234375 10 Oxidation (M) _M(Oxidation (M))PVPEILQL_ ENSG00000184719|ENST00000331772|RNLS;nc|ENSG00000184719|Q5VYX0-2|RNLS 18.1463463914782 0.20357593197100715 2 {I|L}{I|L}Q{I|L} 4 -1 41.186 0 0 3.9054 0 0 569.2524891584 0 569.2524891584 0 24.195925227640984 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}Q{I|L} 3.9054 + + 33 NaN NaN 113320.5 NaN 15923 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19889 81.933 NaN 166220 35 0 18244 0.261 + 28239 TLIEPYSRSTK 11 50 647.8554578324216 1293.6963627316431 2 647.8554077148438 MULTI HCD FTMS 0 0 0 19878 50594.34765625 0.6962888971294765 1 -0.03949737548828125 11 Unmodified _TLIEPYSRSTK_ REV__ENSG00000136960|ENST00000075322|ENPP2;REV__nc|ENSG00000136960|Q13822-2|ENPP2;REV__nc|ENSG00000136960|Q13822-3|ENPP2 4.189502756095605 0.4005469306127019 2 A[EP][VP]{I|L} 6 -1 24.978 0 0 1.9308 0 0 669.3476429669937 0 669.3476429669937 0 19.493559221610965 0 0 0 1.3807196863200843 0 0 0 A[EP][VP]{I|L} 1.9308 - 9 NaN NaN 113291.8 NaN 15924 3963 19878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19891 81.937 NaN 928610 35 0 192620 0.327 + 11328 IYMDTLNIF 9 67 573.2811960784773 1144.5478392237544 2 573.2810668945312 MULTI HCD FTMS 0 0 0 19890 632202.375 0.7408853470462625 -1 0.03949737548828125 1 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 131.26759243768294 0.0005280990274065272 2 DT{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 87.542 0 0 7.6486 0 0 423.18318373847814 0 423.18318373847814 0 62.48055982231925 0 0 0 2.7614393726401687 0 1.4802046884880937 0.8494850021680094 + DT{I|L}N{I|L}{M(Oxidation (M))|F} 7.6486 + + 407 NaN NaN 230456.4 NaN 15925 3964 19890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19892 81.942 NaN 935390 35 0 124120 0.261 + 3097 EAIYNFEVL 9 87 549.2791588940297 1096.5437648548593 2 549.279296875 MULTI HCD FTMS 0 0 0 19890 387100.5 0.6356579250130701 -1 0.03949737548828125 2 Unmodified _EAIYNFEVL_ DSC3|p.F243L|1|0.25|ENSG00000134762|chr18:31024395-31024395|G/C|missense_variant;ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3 103.41943736471063 0.004016698775839292 2 {[CP]|[EA]}{I|L}YN{M(Oxidation (M))|F}EV{I|L} 9 0 + 77.38 0 0 7.0567 7.0567 93.278 0 0 0 9.583428324247123 46.97534431176422 9.583428324247123 20.31743128760553 0 2.0114393726401687 0 1.5044321917401078 1.110924374808178 + + {[CP]|[EA]}{I|L}YN{M(Oxidation (M))|F}EV{I|L};{[CP]|[EA]}{I|L}YGG{M(Oxidation (M))|F}EV{I|L};{[CP]|[EA]}{I|L}Y[{M(Oxidation (M))|F}V]EN{I|L};{[CP]|[EA]}{I|L}Y[{M(Oxidation (M))|F}V]E{I|L}N;{[CP]|[EA]}{I|L}Y[{M(Oxidation (M))|F}V]EGG{I|L} 7.0567;5.2038;2.3683;1.2272;1.2099 +;-;-;-;- + 1699 NaN NaN 232668.2 NaN 15926 3964 19890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19893 81.945 NaN 409940 35 0 53730 0.261 + 10717 IQFSLSELPP 10 75 565.808214166103 1129.6018753990058 2 566.2980346679688 MULTI HCD FTMS 0 0 0 19890 29250.515625 0.6155451510603211 -4 0.12477874755859375 3 Unmodified _IQFSLSELPP_ ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3 13.042465956692817 0.38911719078024076 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 8 8 29.887 0 0 2.6458 0 0 0 161.0788602104432 161.0788602104432 6.699536209249981 0 0 0 0 0 0 0.6694451763165201 0.3807196863200844 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 2.6458 - 394 NaN NaN 147430 NaN 15927 3964 19890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19894 81.949 NaN 185470 35 0 43962 0.263 + -1 MLHNYNYVKV 10 41 432.88524042625113 NaN 0 432.8852233886719 PEAK HCD FTMS 0 0 0 19890 107831.328125 0.41568217888331 -87 2.4314956665039062 4 Oxidation (M) _M(Oxidation (M))LHNYNYVKV_ REV__ENSG00000131469|ENST00000253788|RPL27 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120248.2 NaN 15928 3964 19890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19895 81.952 NaN 137450 35 0 12963 0.261 + 10831 ITMQDFPIL 9 51 539.2840029833038 NaN 0 539.268798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ITMQDFPIL_ REV__ENSG00000167863|ENST00000301587|ATP5PD;REV__ENST00000433885.2_1_9:2900352-2900442:-|nuORF;REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF;REV__nc|ENSG00000167863|O75947-2|ATP5PD 7.289230182591677 0.2599242500475609 2 {I|L} 1 -1 6.9897 0 0 0.64927 0 0 131.12465923996223 829.3163592371226 960.4410184770848 0 0 0 0 0 0 0 0 0 {I|L} 0.64927 + + 28 + NaN NaN 107216 NaN 15929 3964 19890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19896 81.955 NaN 52534 35 0 3825.4 0.261 + 7049 FQEPSRSAVWG 11 38 632.3080782727712 NaN 0 632.775390625 PEAK HCD FTMS 0 0 0 19890 7860.30859375 0.4716892874434793 -2 0.06574249267578125 6 Unmodified _FQEPSRSAVWG_ ENST00000324262.8_1_18:72163648-72167242:+|nuORF 4.5288652416199255 0.32927305702295745 2 PNY 3 10 13.812 0 0 1.094 0 0 609.3351984383174 276.09824548892817 885.4334439272457 0 0 0 0 0 0 0 0 0 PNY 1.094 - 26 + NaN NaN 101787.9 NaN 15930 3964 19890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19898 81.96 NaN 980330 35 0 127420 0.327 + 6878 FPTVVIYVM 9 83 542.7911424624269 1083.5677319916538 2 542.7913208007812 MULTI HCD FTMS 0 0 0 19897 460987.0625 0.8585575246775284 -3 0.0886077880859375 1 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 63.562846038646086 0.012597299157545023 2 {[TV]|[{I|L}S]}P{M(Oxidation (M))|F}[{I|L}V]YV{M(Oxidation (M))|F} 9 4 + 61.393 0 0 5.6658 5.6658 89.734 0 0 0 12.990859778959063 10 10 12.990859778959063 0 1.9247425010840047 0 1.9291746928241125 0 {[TV]|[{I|L}S]}P{M(Oxidation (M))|F}[{I|L}V]YV{M(Oxidation (M))|F};[Y{I|L}][PA][{I|L}V]YV{M(Oxidation (M))|F} 5.6658;4.4669 -;- 301 NaN NaN 240695.5 NaN 15931 3965 19897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19899 81.965 NaN 415960 35 0 14543 0.261 + 20845 PIALLTIMF 9 97 509.80379454164563 1017.5930361500913 2 509.803955078125 MULTI HCD FTMS 0 0 0 19897 454245.03125 0.359019753712126 38 -1.0511322021484375 2 Unmodified _PIALLTIMF_ ENSG00000135914|ENST00000258400|HTR2B;HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 4.75600775471527 0.31496297302216103 2 S[KQ]QVP{[TV]|[{I|L}S]} 8 8 15.938 0 0 1.5662 0 0 132.12549964114038 0 132.12549964114038 0 3.1734550006631785 0 0 0 0 0 0.8937795908422332 0 S[KQ]QVP{[TV]|[{I|L}S]} 1.5662 - 300 + NaN NaN 159346.9 NaN 15932 3965 19897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19900 81.968 NaN 1168800 35 0 270960 0.261 + 24923 RYSNLILNLF 10 77 626.8559011097882 1251.6972492863763 2 626.8562622070312 MULTI HCD FTMS 0 0 0 19897 513903 0.5018049836492015 -3 0.0886077880859375 3 Unmodified _RYSNLILNLF_ ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF 43.476825903602695 0.11523527286127076 2 {I|L}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 6 4 57.762 0 0 4.6147 0 0 520.2388783185562 0 520.2388783185562 0 27.584828753971387 0 0 0 1.7614393726401687 0 0 0.9247425010840047 + {I|L}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 4.6147 + + 202 NaN NaN 284922.8 NaN 15933 3965 19897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19901 81.972 NaN 577140 35 0 58939 0.261 + 18228 MPDPWAEFHL 10 102 621.7845519026189 1241.5545508720377 2 621.784912109375 MULTI HCD FTMS 0 0 0 19897 243094.09375 0.8837651135379241 -1 0.02286529541015625 4 Unmodified _MPDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 96.11092074494114 0.0005333825011732249 2 MPDPWAE{M(Oxidation (M))|F}H{I|L} 10 0 + 100.2 0 0 8.0706 8.0706 95.126 0 0 0 64.46980756981588 8.379231027444405 8.379231027444405 21.23734662171327 0 2.579689690656103 1.154901959985743 0.9489700043360187 0 + + MPDPWAE{M(Oxidation (M))|F}H{I|L};{I|L}DDP{[DA]|[EG]}AE{M(Oxidation (M))|F}H{I|L};MPDP{[DA]|[EG]}A[PG]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[DP]WPMAE{M(Oxidation (M))|F}H{I|L};[DP]WA{NN|[MP]|[D{I|L}]|[EV]}E{M(Oxidation (M))|F}H{I|L};MPDP{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}KD[HQ];MPDP{[DA]|[EG]}[QP]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[DP]WP{[CP]|[EA]}M{M(Oxidation (M))|F}H{I|L};[DP]WA[EP]M{M(Oxidation (M))|F}H{I|L};[WP]DPMAE{M(Oxidation (M))|F}H{I|L} 8.0706;6.36;4.5974;4.5744;4.3582;3.9154;3.6622;3.4605;3.3599;2.9635 +;-;-;-;-;-;-;-;-;- + 1740 + NaN NaN 176029.6 NaN 15934 3965 19897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19902 81.975 NaN 230200 35 0 89109 0.263 + 10423 IPAEADFLL 9 40 494.77104421239693 987.5275354915939 2 494.77117919921875 MULTI HCD FTMS 0 0 0 19897 112639.75 0.8654987245530413 -3 0.0886077880859375 5 Unmodified _IPAEADFLL_ ENSG00000003400|ENST00000286186|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851|CASP10 15.847184025352803 0.2234401846867398 2 M{M(Oxidation (M))|F}{I|L}{I|L} 4 6 31.186 0 0 3.1579 0 0 465.23640639472814 0 465.23640639472814 0 31.18562527100117 0 0 0 0.4247425010840047 0 0 0 M{M(Oxidation (M))|F}{I|L}{I|L} 3.1579 - 13 NaN NaN 124274.4 NaN 15935 3965 19897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19903 81.978 NaN 493390 35 0 59392 0.261 -1 0 82 512.2815524109606 1022.5485518887211 2 512.2818603515625 MULTI HCD FTMS 0 0 0 19897 136975.859375 0.5131258818710434 38 -1.0511322021484375 6 NaN NaN 2 SVQN 4 -1 39.993 0 0 3.9111 0 0 576.3345115270313 0 576.3345115270313 0 0.37925996477591184 0 0 0 0 0 0.805462187404089 0 SVQN 3.9111 - 348 NaN NaN 181675.5 NaN 15936 3965 19897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19905 81.983 NaN 2563000 35 0 489130 0.327 + 35349 YYALEVSYF 9 98 577.773813394787 1153.533073856374 2 577.774169921875 MULTI HCD FTMS 0 0 0 19904 1151748.75 0.22384788666861216 -4 0.11150360107421875 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 92.8221339359638 0.0044520161739443126 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F} 9 2 + 79.663 0 0 6.906 6.906 93.851 0 0 0 6.327906406135611 64.54750954047803 6.327906406135611 31.237577350063788 0 2.610924374808178 0 1.341129063296272 0 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}TVDY{M(Oxidation (M))|F};{M(Oxidation (M))|F}H{I|L}{I|L}S{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V[YV]VDY{M(Oxidation (M))|F};M{[{M(Oxidation (M))|F}H]|[RQ]}V[Q{I|L}]D[HQ];M{[{M(Oxidation (M))|F}H]|[RQ]}VEG{[VA]|[{I|L}G]}[HQ];{M(Oxidation (M))|F}H{I|L}{I|L}[{M(Oxidation (M))|F}V][MT]{M(Oxidation (M))|F};M{[{M(Oxidation (M))|F}H]|[RQ]}VG[{I|L}A]D[HQ];{M(Oxidation (M))|F}H{I|L}[{M(Oxidation (M))|F}V][MT]{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}H{I|L}[{M(Oxidation (M))|F}V]{I|L}[MT]{M(Oxidation (M))|F} 6.906;4.198;3.093;2.5904;2.5488;2.5024;2.3054;2.2879;2.2654;2.1097 -;-;-;-;-;-;-;-;-;- 2574 NaN NaN 481312.9 NaN 15937 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19906 81.988 NaN 631090 35 0 132540 0.261 + 32138 VYSIISVQL 9 54 511.29993478353236 1020.5853166338647 2 511.300048828125 MULTI HCD FTMS 0 0 0 19904 315078.125 0.09435245198651004 7 -0.20330810546875 2 Unmodified _VYSIISVQL_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant 103.35351024395868 0.004027461563756449 2 [YV]{[TV]|[{I|L}S]}{I|L}SVQ{I|L} 9 0 + 73.949 0 0 7.2458 7.2458 90.727 0 0 0 6.826440444176214 51.80909368620867 6.826440444176214 9.208187539523749 0 2.2614393726401687 0 2.024227503252014 0 + + [YV]{[TV]|[{I|L}S]}{I|L}SVQ{I|L};[YV]{[TV]|[{I|L}S]}{I|L}SV[AG]{I|L};[YV]{[TV]|[{I|L}S]}{I|L}S{I|L}N{I|L};[YV]{[TV]|[{I|L}S]}{I|L}S{I|L}GG{I|L} 7.2458;6.3435;5.7497;4.8475 +;-;-;- + 221 NaN NaN 186254.9 NaN 15938 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19907 81.991 NaN 329220 35 0 41535 0.261 + -1 YLYEARLLM 9 54 594.3098337249587 NaN 0 594.3306274414062 PEAK HCD FTMS 0 0 0 19904 13640.9697265625 1 0 0 3 Oxidation (M) _YLYEARLLM(Oxidation (M))_ REV__tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1 7.289230182591677 0.2599242500475609 2 YM 2 -1 9.464 0 0 0.79757 0 0 113.04366539737983 776.4349222884906 889.4785876858705 0 0 0 0 0 0 0 0 0 YM 0.79757 - 29 + NaN NaN 145521.1 NaN 15939 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19908 81.995 NaN 493420 35 0 104850 0.261 + -1 YHMAFICLY 9 71 588.7647566108086 1175.5149602884171 2 588.7652587890625 MULTI HCD FTMS 0 0 0 19904 205677.6875 0.22084072188498394 -4 0.11150360107421875 4 Oxidation (M) _YHM(Oxidation (M))AFICLY_ REV__tr|U7T1Y4|U7T1Y4_FUSNUSodium:protonantiporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00685PE=4SV=1 14.581692164780916 0.23437375358055648 2 YYA{I|L}EV 6 -1 53.849 0 0 4.5809 0 0 0 434.1325683304744 434.1325683304744 23.844340914803936 0 0 0 0 2.5 2 0 0 YYA{I|L}EV 4.5809 - 357 NaN NaN 161347.2 NaN 15940 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19909 81.998 NaN 392750 35 0 75145 0.262 + 3177 EAVVFEAVL 9 61 488.77125490858595 975.5279568839719 2 488.7713317871094 MULTI HCD FTMS 0 0 0 19904 177870.4375 0.5522067005773482 -2 0.0457611083984375 5 Unmodified _EAVVFEAVL_ BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6 112.59319219568356 0.00251905749371435 2 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L} 9 2 + 87.164 0 0 8.935 8.935 94.69 0 0 0 7.147642715192504 72.3822875860511 7.147642715192504 11.879839358585869 0 2.3494850021680094 0 2.2856668758921828 0 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L};{[VA]|[{I|L}G]}E{M(Oxidation (M))|F}VEAV{I|L};{[VA]|[{I|L}G]}E{M(Oxidation (M))|F}{I|L}DAV{I|L};{[VA]|[{I|L}G]}E{M(Oxidation (M))|F}{[DA]|[EG]}{I|L}V{I|L} 8.935;7.7172;6.3339;4.4249 -;-;-;- 279 NaN NaN 154301.6 NaN 15941 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19910 82.001 NaN 292100 35 0 24640 0.261 + 18477 MPYNYPVLL 9 59 555.2886048074001 1108.5626566816002 2 555.2883911132812 MULTI HCD FTMS 0 0 0 19904 124116.1640625 0.7707905571046642 1 -0.02951812744140625 6 Unmodified _MPYNYPVLL_ ENSG00000102786|ENST00000311234|INTS6;ENSG00000165359|ENST00000639893|INTS6L;nc|ENSG00000102786|Q9UL03-3|INTS6;nc|ENSG00000165359|Q5JSJ4|INTS6L 16.942295170755138 0.21397866736869717 2 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DD{I|L}{I|L} 7 5 29.665 0 0 2.676 0 0 260.137010642775 0 260.137010642775 0 12.5869662711046 0 0 0 0.5 0 0 0.805462187404089 N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DD{I|L}{I|L} 2.676 - 257 NaN NaN 130777.1 NaN 15942 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19911 82.005 NaN 531280 35 0 112460 0.261 -1 HACTQDPFCE 10 54 604.2294374802436 1206.4443220272872 2 604.22998046875 MULTI HCD FTMS 0 0 0 19904 159080.46875 0.25782068181157475 -4 0.11150360107421875 7 Carbamidomethyl (C) _HACTQDPFC(Carbamidomethyl (C))E_ ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8 3.5964929083625545 0.45626689593999237 2 VS[Y{M(Oxidation (M))|F}] 4 -1 15.674 0 0 1.2992 0 0 692.2012806623062 0 692.2012806623062 0 0.18954998148707602 0 0 0 0.4247425010840047 0 0 0 VS[Y{M(Oxidation (M))|F}] 1.2992 - 25 NaN NaN 178010.3 NaN 15943 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19912 82.008 NaN 265380 35 0 13798 0.261 + 25517 SFITSVYNF 9 69 539.2674113663035 1076.5202697994068 2 540.2559814453125 MULTI HCD FTMS 0 0 0 19904 13064.638671875 0.5532779037640974 -1 0.02289581298828125 8 Unmodified _SFITSVYNF_ CUBN|p.N1018Hfs*6|1|0.03|ENSG00000107611|chr10:17065595-17065596|-/TAGAATAAAGGGTAGTG|frameshift_variant;CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN 16.942295170755138 0.21397866736869717 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}[WH]{I|L} 9 4 + 39.332 0 0 3.6536 3.6536 83.812 0 0 0 10.747490543075177 2.6490872423367833 2.6490872423367833 7.781512503836442 0 0 1.6989700043360187 0.6989700043360187 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}[WH]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}{[CA]|SS}[WH]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP][WD]{I|L}T{I|L};{[QN]|[E{I|L}]|[KN]}V{[C(Carbamidomethyl (C))E]|[WC]}T{I|L}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T[YN]TVV{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[WT]|[RM]}[WH]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[QP]Y[WH]{I|L};{[QN]|[E{I|L}]|[KN]}V{[C(Carbamidomethyl (C))E]|[WC]}T[DV]{I|L};{[QN]|[E{I|L}]|[KN]}[CS][TP]T{I|L}T{I|L} 3.6536;2.9307;2.8608;2.6552;2.3726;2.0043;1.9421;1.4515;1.4042 -;-;-;-;-;-;-;-;- 319 NaN NaN 138638.4 NaN 15944 3966 19904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19914 82.013 NaN 1325200 35 0 284660 0.327 + 2401 DPLGYEIQL 9 83 524.2716864429646 1046.528819952729 2 524.2716064453125 MULTI HCD FTMS 0 0 0 19913 797666.625 0.9596267981912858 -1 0.02951812744140625 1 Unmodified _DPLGYEIQL_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 99.75527289724121 0.004270341300239591 2 [VP]EGYE{I|L}Q{I|L} 9 2 + 73.114 0 0 6.9864 6.9864 91.822 0 0 0 4.137342758552691 45.516609670558594 4.137342758552691 12.460762528683702 0 2.2302046884880937 0 0.6747425010840047 0.3252574989159953 [VP]EGYE{I|L}Q{I|L};[VP]EGYE{I|L}[AG]{I|L};[VP]EGYE{I|L}AAV;{[QN]|[E{I|L}]|[KN]}Q{I|L}[YG][DP]{I|L};[Q{I|L}]E{I|L}[YG][DP]{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}Q[YG][DP]{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[WT]|[RM]}Q{I|L};{[QN]|[E{I|L}]|[KN]}Q{I|L}[YG][EP]V;[Q{I|L}]E{I|L}[YG][EP]V;{[QN]|[E{I|L}]|[KN]}{I|L}Q[YG][EP]V 6.9864;5.7957;5.0058;2.3077;2.1122;1.758;1.5377;1.207;1.0115;0.65736 -;-;-;-;-;-;-;-;-;- 615 NaN NaN 295375.8 NaN 15945 3967 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19915 82.017 NaN 2060300 35 0 182840 0.261 + 28901 TWFTAGAKLLF 11 107 627.8475655601902 1253.6805781871803 2 627.8472290039062 MULTI HCD FTMS 0 0 0 19913 963122.125 0.7036045389157481 -1 0.02951812744140625 2 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 166.76915356408847 1.5133472267439584E-08 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F} 11 0 + 98.578 0 0 7.8631 7.8631 89.706 0 0 0 3.2210667880990655 66.70591518112876 3.2210667880990655 6.09122312673766 0 3.3807196863200843 0 2.659097005026964 0 + + {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]TTAGAK{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAGAK{I|L}{I|L}{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]TTAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGRR{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGA{I|L}{I|L}K{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]TTQAK{I|L}{I|L}{M(Oxidation (M))|F} 7.8631;7.3772;6.9215;6.4672;6.3763;5.9813;5.891;5.8904;5.6997;5.5256 +;-;-;-;-;-;-;-;-;- + 8504 NaN NaN 403180.4 NaN 15946 3967 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19916 82.021 NaN 546680 35 0 24900 0.263 + 3592 EKIQKNKN 8 90 501.2906072263501 1000.5666615195003 2 501.2906188964844 MULTI HCD FTMS 0 0 0 19913 522148.5625 0.2953775255777828 38 -1.04779052734375 3 Unmodified _EKIQKNKN_ tr|U7SUA6|U7SUA6_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01360PE=4SV=1 7.910154910731844 0.5302565402355366 2 Q 1 7 13.099 0 0 1.3092 0 0 414.248191217228 455.2493716084423 869.4975628256702 0 0 0 0 0 0.8494850021680094 0 0 0 + Q 1.3092 + + 126 + NaN NaN 172756.1 NaN 15947 3967 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19917 82.024 NaN 881250 35 0 49247 0.261 + 31389 VYAFSIENF 9 112 545.2662564868235 1088.517960040447 2 545.2662353515625 MULTI HCD FTMS 0 0 0 19913 252469.78125 0.4354775226815 2 -0.04904937744140625 4 Unmodified _VYAFSIENF_ ENSG00000117682|ENST00000236342|DHDDS;ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-2|DHDDS;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS 126.56589448801843 0.0008132384440316759 2 [YV]A{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F} 9 0 + 85.116 0 0 7.8194 7.8194 90.332 0 0 0 2.0758492450743375 2.0758492450743375 2.0758492450743375 7.798859261803983 0 2.8667053245199625 1.154901959985743 0.4247425010840047 0.9559771852360797 + + [YV]A{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}NE{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}GEG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}S{I|L}EN{M(Oxidation (M))|F};[YV]A[{I|L}A]YEN{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QVSE{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}S{I|L}GGE{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}VS{I|L}EN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{M(Oxidation (M))|F}S{I|L}EGG{M(Oxidation (M))|F} 7.8194;7.1029;5.9127;5.767;5.7098;4.9295;4.8823;4.8015;4.7665;4.5986 +;-;-;-;-;-;-;-;-;- + 4064 + NaN NaN 228777.2 NaN 15948 3967 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19918 82.027 NaN 281890 35 0 33734 0.261 + 18172 MPDIDFNL 8 53 482.72613961483887 963.4377262964778 2 482.7258605957031 MULTI HCD FTMS 0 0 0 19913 114769.3203125 0.6537058051923306 2 -0.04904937744140625 5 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 34.10243960390752 0.30669083636501265 2 {NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}N{I|L} 8 0 + 43.391 0 0 4.5037 4.5037 86.94 0 0 0 0.45757490560674796 29.895775165767873 0.45757490560674796 9.262137858390808 0 0.7742275032520141 0 0 0.3252574989159953 + + {NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}D{M(Oxidation (M))|F}GG{I|L} 4.5037;3.5424 +;- + 122 NaN NaN 139477.5 NaN 15949 3967 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19919 82.031 NaN 494190 35 0 117370 0.261 + 35367 YYCMLEELE 9 82 596.7477163069368 1191.4808796806735 2 596.74755859375 MULTI HCD FTMS 0 0 0 19913 41299.59765625 0.15758311752785262 -3 0.07527923583984375 6 Unmodified _YYCMLEELE_ REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;REV__ENSG00000070371|ENST00000427926|CLTCL1;REV__nc|ENSG00000070371|P53675-2|CLTCL1 12.531546534597751 0.2520865569484384 2 {I|L}SYE 4 -1 35.904 0 0 3.0134 0 0 681.2397938459 0 681.2397938459 0 -0.5102999566398125 -0.5102999566398125 0 0 0.3252574989159953 0 0.8494850021680094 0 {I|L}SYE 3.0134 - 265 NaN NaN 188708.5 NaN 15950 3967 19913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19921 82.036 NaN 1037700 35 0 152330 0.327 + 27930 TENDIYNFF 9 85 581.7557496476726 1161.496946362145 2 581.7564086914062 MULTI HCD FTMS 0 0 0 19920 666488.25 0.5916718609018405 -4 0.09815216064453125 1 Unmodified _TENDIYNFF_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 103.35351024395868 0.004027461563756449 2 {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 73.979 0 0 6.3693 6.3693 89.147 0 0 0 2.922152515121226 33.969771685254386 2.922152515121226 9.208187539523749 0 2.242992819099939 0 1.4916440611282624 1.274227503252014 + + {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}ND{I|L}YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RV][YG]N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3693;5.5765;5.2109;4.0236 +;-;-;- + 897 NaN NaN 252474.8 NaN 15951 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19922 82.04 NaN 576450 35 0 47626 0.261 + 13593 KYPENFFLL 9 95 585.8131605635726 1169.6117681939452 2 585.813232421875 MULTI HCD FTMS 0 0 0 19920 342544.34375 0.001741247249083831 243 -5.7111053466796875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 59.368380827593164 0.01846506874148156 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 53.692 0 0 4.5906 4.5906 86.339 0 0 0 5.530155594481492 24.333493279431558 5.530155594481492 9.208187539523749 0 2.113364334130467 0 0.4247425010840047 0.5 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[EP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SV[TA]K{I|L};[Y{M(Oxidation (M))|F}]{I|L}E{M(Oxidation (M))|F}[NP]K{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}[EP]{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}E{M(Oxidation (M))|F}K[NP]{I|L};[Y{M(Oxidation (M))|F}]{I|L}ESV{[RE]|[WV]}K 4.5906;3.8033;3.2268;3.0688;2.901;2.6975;2.5551;2.4395;2.162;2.1337 +;-;-;-;-;-;-;-;-;- + 1805 NaN NaN 174164.9 NaN 15952 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19923 82.044 NaN 149090 35 0 6536.6 0.261 + 34604 YPNSWFRF 8 62 558.7666293160219 1115.5187056988436 2 558.7672729492188 MULTI HCD FTMS 0 0 0 19920 53207.8046875 0.06780443384872384 -14 0.390960693359375 3 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 18.13498045792455 0.4603629008820478 2 D{I|L}E{I|L}E{I|L} 6 -1 38.167 0 0 3.4215 0 0 385.16050917793126 0 385.16050917793126 0 19.31540340012745 0 0 0 1.1549471895720984 0 0.3252574989159953 0 D{I|L}E{I|L}E{I|L} 3.4215 - 197 NaN NaN 113884.3 NaN 15953 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19924 82.047 NaN 142740 35 0 21320 0.261 + 22643 QWCRDLQL 8 54 531.2613464113655 1060.5081398895309 2 531.2615966796875 MULTI HCD FTMS 0 0 0 19920 44104.046875 0.8969017483991524 -1 0.0228729248046875 4 Unmodified _QWCRDLQL_ ENSG00000135637|ENST00000393965|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;nc|ENSG00000135637|Q17RM4-3|CCDC142 17.11289562659939 0.4678830079548939 2 E{I|L}Q{I|L} 4 5 40.745 0 0 3.8421 0 0 559.2281361310562 0 559.2281361310562 0 25.260847058321687 0 0 0 0.8807196863200843 0 0 0 E{I|L}Q{I|L} 3.8421 - 29 NaN NaN 115282.7 NaN 15954 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19925 82.05 NaN 240790 35 0 10646 0.261 + 29933 VFEPSWAEF 9 79 556.2568824985632 1110.4992120639263 2 556.2576293945312 MULTI HCD FTMS 0 0 0 19920 21128.5625 0.25349003199490855 3 -0.0885772705078125 5 Unmodified _VFEPSWAEF_ ENSG00000012817|ENST00000317961|KDM5D;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C 21.74664581756881 0.17247014374749275 2 [YV]TP{I|L}{I|L}RC 8 7 42.177 0 0 3.798 0 0 0 161.96269312025734 161.96269312025734 11.414865019668099 0 0 0 0 0.5 2 0 0 [YV]TP{I|L}{I|L}RC 3.798 - 912 NaN NaN 122764 NaN 15955 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19926 82.054 NaN 103910 35 0 9464.4 0.262 + -1 PDGKDMAR 8 51 453.2097327756132 NaN 0 453.2097473144531 PEAK HCD FTMS 0 0 0 19920 33261.875 0.8462345818820785 -3 0.075286865234375 6 Oxidation (M) _PDGKDM(Oxidation (M))AR_ REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;REV__FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;REV__FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant 7.910154910731844 0.38822285293237185 2 D{M(Oxidation (M))|F}Y{I|L} 4 -1 14.412 0 0 1.5936 0 0 98.00591783970852 265.12946497135005 363.13538281105855 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}Y{I|L} 1.5936 - 15 + NaN NaN 103060.5 NaN 15956 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19927 82.057 NaN 71366 35 0 5636.1 0.261 + 1884 CYFFILQTHH 10 41 436.87927119893396 NaN 0 436.8794860839844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _CYFFILQTHH_ REV__nc|ENSG00000084112|Q8WYL5-2|SSH1;REV__nc|ENSG00000084112|Q8WYL5-5|SSH1 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91566.5 NaN 15957 3968 19920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19929 82.062 NaN 738980 35 0 82290 0.327 + 17905 MILELDPTF 9 70 547.7754196984221 1093.536286463644 2 547.7757568359375 MULTI HCD FTMS 0 0 0 19928 396450.375 0.06613174291465644 -13 0.3546600341796875 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 171.46704133333822 3.0280501322097084E-09 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 97.362 0 0 8.9034 8.9034 97.428 0 0 0 9.361045765271285 60.57873064179077 9.361045765271285 38.79493455131808 0 2.6237125054200234 2 0.7302046884880937 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}AE{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]PD{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}T]P[{M(Oxidation (M))|F}V]E{I|L}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]E{I|L}{[QN]|[E{I|L}]|[KN]} 8.9034;5.3557;4.8974;4.6722;4.2062;3.5268;2.8141;2.7255;2.4268;2.3382 +;-;-;-;-;-;-;-;-;- + 626 NaN NaN 200117 NaN 15958 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19930 82.066 NaN 445190 35 0 59578 0.261 + 28564 TPTSVLDYF 9 63 521.7582505821451 1041.5019482310902 2 521.75830078125 MULTI HCD FTMS 0 0 0 19928 173050.453125 0.4113304621884631 4 -0.1247406005859375 2 Unmodified _TPTSVLDYF_ ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF;nc|ENSG00000035928|P35251|RFC1 57.47134341890925 0.0211188941628804 2 {I|L}DY{M(Oxidation (M))|F} 4 5 51.23 0 0 4.9189 0 0 485.24766357718676 0 485.24766357718676 0 46.625853418640375 0 0 0 1.6549471895720984 0 0.4247425010840047 0 + {I|L}DY{M(Oxidation (M))|F} 4.9189 + + 75 NaN NaN 149794.4 NaN 15959 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19931 82.07 NaN 478110 35 0 58661 0.261 + 10718 IQFSLSELPP 10 76 565.808214166103 1129.6018753990058 2 566.2976684570312 MULTI HCD FTMS 0 0 0 19928 43244.5625 0.9100345818809817 1 -0.0395050048828125 3 Unmodified _IQFSLSELPP_ ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3 8.745405648335112 0.42901288225909884 2 PS{I|L}M{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 7 8 29.073 0 0 2.5737 0 0 290.1796474710746 0 290.1796474710746 0 -0.7973492024245843 -0.7973492024245843 0 0 0.2742275032520141 0 0 0 PS{I|L}M{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.5737 - 373 + NaN NaN 178197.3 NaN 15960 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19932 82.073 NaN 912010 35 0 94803 0.261 + 7135 FSCLYCTLL 9 95 560.2642402560249 1118.5139275788497 2 560.2639770507812 MULTI HCD FTMS 0 0 0 19928 322838.90625 0.2895540201385306 -3 0.0785675048828125 4 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))LYCTLL_ REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF 50.855029805455786 0.030374663808198754 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C{I|L} 10 -1 + 100.09 0 0 8.948 8.948 90.039 0 0 0 16.933115814076345 16.53212513775344 16.53212513775344 3.023787536356579 0 1.8807196863200843 1.6989700043360187 1.8882104921644451 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YC]|[HE]}{I|L}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG[MT]C{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{[YC]|[HE]}{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG[MT]{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[YC]|[HE]}GT{I|L}C{I|L};[YT]V{[{M(Oxidation (M))|F}C]|[YS]}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YC]|[HE]}{I|L}GTC{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[YC(Carbamidomethyl (C))]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YC(Carbamidomethyl (C))]T{I|L}C{I|L} 8.948;8.6777;8.0146;7.9867;7.7545;7.4712;7.206;7.0568;7.0407;6.934 -;-;-;-;-;-;-;-;-;- 2348 NaN NaN 230738.4 NaN 15961 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19933 82.076 NaN 325260 35 0 37256 0.261 + 6208 FPENYVPTVF 10 65 606.8007917785204 1211.5870306238407 2 606.8010864257812 MULTI HCD FTMS 0 0 0 19928 118437.0859375 0.749360298139672 -1 0.02617645263671875 5 Unmodified _FPENYVPTVF_ ENSG00000115963|ENST00000263895|RND3 18.373094154950223 0.33925629317698053 2 [Y{I|L}][VS]V 5 7 33.697 0 0 2.7812 0 0 0 647.2478942315157 647.2478942315157 15.113168458567685 0 0 0 0 0.8807196863200843 2 0.3807196863200844 0 [Y{I|L}][VS]V 2.7812 - 130 NaN NaN 141538.1 NaN 15962 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19934 82.08 NaN 262600 35 0 21436 0.261 -1 MLHDFTQQV 9 66 567.7660838831915 1133.517614833183 2 569.2825927734375 MULTI HCD FTMS 0 0 0 19928 11941.8154296875 0.38862974064843264 -8 0.22296905517578125 6 Oxidation (M) _M(Oxidation (M))LHDFTQQV_ ENSG00000105851|ENST00000496166|PIK3CG 10.823927491677226 0.26684000660059787 2 QNQ{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 7 -1 39.129 0 0 3.452 0 0 0 224.10398279361564 224.10398279361564 11.748197982810492 0 0 0 0 0 0 0.7302046884880937 0.4247425010840047 QNQ{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}E 3.452 - 392 + NaN NaN 128872.1 NaN 15963 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19935 82.083 NaN 985200 35 0 117860 0.261 + 35655 YYIGDFGGTGE 11 96 589.7526738635734 1177.4907947939466 2 589.7530517578125 MULTI HCD FTMS 0 0 0 19928 106050.671875 0.5833653068303984 -1 0.02617645263671875 7 Unmodified _YYIGDFGGTGE_ REV__ENSG00000188112|ENST00000341865|C6orf132;REV__nc|nan|Q5T0Z8-2|C6orf132;REV__nc|nan|Q5T0Z8-4|C6orf132 19.256988751693697 0.28929563740265996 2 YYA{[YC]|[HE]}VA 7 -1 36.713 0 0 3.1179 0 0 0 341.09452949537166 341.09452949537166 11.252501954408434 0 0 0 0 0.8252574989159953 2 0 0 YYA{[YC]|[HE]}VA 3.1179 - 2753 NaN NaN 241096.3 NaN 15964 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19936 82.086 NaN 190900 35 0 13818 0.261 -1 RYCGCTEYF 9 56 599.7365923273563 1197.4586317215126 2 599.7554321289062 MULTI HCD FTMS 0 0 0 19928 25972.185546875 0.3362726067643151 3 -0.0952301025390625 8 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))GCTEYF_ ENST00000402010.6_1_11:63676910-63677021:+|nuORF 2.0597508629832335 0.3354026079994024 2 ST{M(Oxidation (M))|F}[VS][Y{M(Oxidation (M))|F}] 7 -1 13.204 0 0 1.1027 0 0 348.10909666467506 0 348.10909666467506 0 8.60038831858624 0 0 0 0 0 0.3494850021680094 0 ST{M(Oxidation (M))|F}[VS][Y{M(Oxidation (M))|F}] 1.1027 - 39 + NaN NaN 124007.3 NaN 15965 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19937 82.09 NaN 54814 35 0 5567.3 0.264 -1 0 41 479.27746304091426 956.5403731486285 2 479.2774963378906 MULTI HCD FTMS 0 0 0 19928 54435.91015625 0.3843373170331602 7 -0.2032928466796875 9 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.57337 0 0 496.3430597714785 310.1042879693969 806.4473477408754 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.57337 - 7 + NaN NaN 103795.4 NaN 15966 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19938 82.093 NaN 121990 35 0 10789 0.261 + 11675 IYWMVNYNF 9 46 633.2862730080872 1264.5579930829742 2 633.2869262695312 MULTI HCD FTMS 0 0 0 19928 51088.69921875 0.8677867796334194 1 -0.0395050048828125 10 Oxidation (M) _IYWM(Oxidation (M))VNYNF_ ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2 43.85829265575387 0.04763305254408404 2 VNYN{M(Oxidation (M))|F} 5 4 51.44 0 0 4.0678 0 0 609.2640434385315 0 609.2640434385315 0 47.4607625286837 0 0 0 1.8252574989159953 0 0 0 + VNYN{M(Oxidation (M))|F} 4.0678 + + 76 NaN NaN 120200 NaN 15967 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19939 82.096 NaN 115780 35 0 11906 0.262 -1 0 66 531.8170833266972 1061.6196137201944 2 531.8170166015625 MULTI HCD FTMS 0 0 0 19928 54864.90625 0.044020619280466446 -27 0.7415237426757812 11 NaN NaN 2 Q{I|L}E 3 -1 16.198 0 0 1.5258 0 0 132.20804351937085 556.2064018462756 688.4144453656465 0 0 0 0 0 0 0 0 0 Q{I|L}E 1.5258 - 28 + NaN NaN 107493.6 NaN 15968 3969 19928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19941 82.101 NaN 844630 35 0 160910 0.327 + 11329 IYMDTLNIF 9 81 573.2811960784773 1144.5478392237544 2 573.2816162109375 MULTI HCD FTMS 0 0 0 19940 581654.8125 0.6816480681841653 5 -0.13430023193359375 1 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 115.6920309560759 0.002013163348980568 2 DT{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 75.821 0 0 6.6245 0 0 423.1820948474857 0 423.1820948474857 0 44.058327325216524 0 0 0 2.274227503252014 0 0.9361818737241734 0.805462187404089 + DT{I|L}N{I|L}{M(Oxidation (M))|F} 6.6245 + + 825 NaN NaN 223185.6 NaN 15969 3970 19940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19942 82.106 NaN 149230 35 0 11438 0.261 + 27333 SYRELFEFF 9 58 619.2986985366466 1236.5828441400931 2 619.2990112304688 MULTI HCD FTMS 0 0 0 19940 44122.84765625 0.20005796934089587 7 -0.18658447265625 2 Unmodified _SYRELFEFF_ ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A;nc|ENSG00000111319|P37088-4|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;SCNN1A-DCP1B|1|fusion;SCNN1A-DCP1B|2|fusion 17.44264345198275 0.2096557692338702 2 YYP[KP]{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 8 5 39.798 0 0 3.2184 0 0 0 162.07244309933063 162.07244309933063 7.860075641309052 0 0 0 0 1 1.154901959985743 0 0 YYP[KP]{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3.2184 - 129 NaN NaN 112439 NaN 15970 3970 19940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19943 82.109 NaN 157140 35 0 19083 0.261 + 12362 KNTEYMKLIF 10 55 643.8427606343179 1285.6709683354356 2 643.842529296875 MULTI HCD FTMS 0 0 0 19940 74264.3515625 0.7540429364455286 1 -0.02289581298828125 3 Unmodified _KNTEYMKLIF_ REV__ENSG00000188352|ENST00000338382|FOCAD;REV__ENST00000603552.1_1_9:20881907-20885147:+|nuORF 19.361941925380144 0.3300069447713393 2 K{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 30.706 0 0 2.3883 0 0 766.3273182599625 0 766.3273182599625 0 16.001159735598875 0 0 0 0.805462187404089 0 0 0 K{I|L}{I|L}{M(Oxidation (M))|F} 2.3883 + + 104 NaN NaN 118746.9 NaN 15971 3970 19940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19944 82.113 NaN 171870 35 0 10301 0.262 + 6534 FPKIRWLF 8 69 553.82984672536 1105.6451405175198 2 553.8302001953125 MULTI HCD FTMS 0 0 0 19940 53870.984375 0.38937089551817405 11 -0.28458404541015625 4 Unmodified _FPKIRWLF_ REV__ENSG00000156687|ENST00000404895|UNC5D;REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D;REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant 6.354104778181461 0.5325651638111438 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MN][TA]VTP 9 -1 28.35 0 0 2.5641 0 0 0 144.13977013777767 144.13977013777767 14.855312426617576 0 0 0 0 0 1.6989700043360187 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MN][TA]VTP 2.5641 - 84 NaN NaN 123066.9 NaN 15972 3970 19940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19945 82.116 NaN 429400 35 0 69406 0.261 + 24998 RYVPGLLLSYL 11 59 647.3819668765617 1292.7493808199233 2 647.3814086914062 MULTI HCD FTMS 0 0 0 19940 128254.2578125 0.8047378051661903 -2 0.06568145751953125 5 Unmodified _RYVPGLLLSYL_ ENSG00000141699|ENST00000309428|RETREG3 51.41523569358685 0.07560675738465314 2 G{I|L}{I|L}SY{I|L} 6 5 63.621 0 0 4.9213 0 0 628.3749256818375 0 628.3749256818375 0 56.630937864725155 0 0 0 1.8494850021680094 0 1 0 G{I|L}{I|L}SY{I|L} 4.9213 - 54 NaN NaN 148842.7 NaN 15973 3970 19940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19946 82.119 NaN 123070 35 0 5050.1 0.261 + 19108 NFFDVIKQLF 10 53 635.8450519549486 1269.6755509766972 2 635.845703125 MULTI HCD FTMS 0 0 0 19940 46129.171875 0.777413902679584 3 -0.085235595703125 6 Unmodified _NFFDVIKQLF_ ENSG00000174672|ENST00000528841|BRSK2 21.536976647645854 0.3096624038397699 2 T[DG]{I|L}{M(Oxidation (M))|F} 5 7 28.266 0 0 2.2262 0 0 718.4395619123062 0 718.4395619123062 0 23.662012896534854 0 0 0 0.7302046884880937 0 0.7742275032520141 0 T[DG]{I|L}{M(Oxidation (M))|F} 2.2262 - 42 NaN NaN 113214.6 NaN 15974 3970 19940 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19948 82.124 NaN 6390000 35 0 1575700 0.327 + 35350 YYALEVSYF 9 99 577.773813394787 1153.533073856374 2 577.7745361328125 MULTI HCD FTMS 0 0 0 19947 4197646.5 0.8158327048385305 1 -0.03282928466796875 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 146.00731375242447 1.3047045798573153E-05 2 YYA{I|L}EVSY{M(Oxidation (M))|F} 9 0 + 98.126 0 0 8.5066 8.5066 90.298 0 0 0 5.228787452803374 16.478174818886373 5.228787452803374 5.228787452803374 0 2.805462187404089 1.3010299956639813 1.5 0 + + YYA{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};YYAE{I|L}VSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}E{I|L}VSY{M(Oxidation (M))|F};YYA{I|L}D{I|L}SY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}D{I|L}SY{M(Oxidation (M))|F};YYAEV{I|L}SY{M(Oxidation (M))|F};YYAVE{I|L}SY{M(Oxidation (M))|F};YYA{I|L}TVDY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}EV{I|L}SY{M(Oxidation (M))|F} 8.5066;8.0533;7.6905;7.2372;7.1166;6.6633;6.3005;6.1821;6.0319;5.8472 +;-;-;-;-;-;-;-;-;- + 2633 NaN NaN 654149.2 NaN 15975 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19949 82.129 NaN 568620 35 0 74694 0.261 + 6879 FPTVVIYVM 9 61 542.7911424624269 1083.5677319916538 2 542.7914428710938 MULTI HCD FTMS 0 0 0 19947 402651.34375 0.7499111561250824 3 -0.091888427734375 2 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 81.86404211737425 0.005249203329642222 2 [Y{I|L}][PA][{I|L}V]YV{M(Oxidation (M))|F} 9 4 + 51.589 0 0 4.7611 4.7611 91.192 0 0 0 10.20181229336984 24.67802475701326 10.20181229336984 51.58924985774085 0 1.9247425010840047 1.3979400086720375 0 0 [Y{I|L}][PA][{I|L}V]YV{M(Oxidation (M))|F} 4.7611 - 132 NaN NaN 175637.9 NaN 15976 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19950 82.132 NaN 255960 35 0 8744.7 0.261 + 20846 PIALLTIMF 9 75 509.80379454164563 1017.5930361500913 2 509.8037414550781 MULTI HCD FTMS 0 0 0 19947 160236.234375 0.1266452452826274 44 -1.228240966796875 3 Unmodified _PIALLTIMF_ ENSG00000135914|ENST00000258400|HTR2B;HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F} 1 8 14.604 0 0 1.4352 0 0 852.5130476020429 0 852.5130476020429 0 3.745528187832221 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.4352 + + 58 + NaN NaN 123772.8 NaN 15977 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19951 82.135 NaN 283720 35 0 19161 0.261 + 18229 MPDPWAEFHL 10 85 621.7845519026189 1241.5545508720377 2 621.7849731445312 MULTI HCD FTMS 0 0 0 19947 129590.765625 0.47112538165499807 5 -0.14089202880859375 4 Unmodified _MPDPWAEFHL_ ENSG00000103319|ENST00000263026|EEF2K 51.629811660486645 0.07186226796122157 2 MPDPWAE{M(Oxidation (M))|F}H{I|L} 10 0 + 63.696 0 0 5.1303 5.1303 89.518 0 0 0 40.22791930092417 8.022562268522577 8.022562268522577 16.180540824916392 0 1.9361818737241734 0 0 0 + + MPDPWAE{M(Oxidation (M))|F}H{I|L};{I|L}DDPW{M(Oxidation (M))|F}{[CP]|[EA]}H{I|L};MPDPW{M(Oxidation (M))|F}{[CP]|[EA]}H{I|L} 5.1303;3.8271;3.7629 +;-;- + 410 + NaN NaN 141866.9 NaN 15978 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19952 82.139 NaN 411780 35 0 32229 0.261 -1 NNCALESETF 10 89 592.7472068751955 1183.479860817191 2 592.7469482421875 MULTI HCD FTMS 0 0 0 19947 109156.890625 0.916424083315657 1 -0.03282928466796875 5 Carbamidomethyl (C) _NNC(Carbamidomethyl (C))ALESETF_ ENSG00000114248|ENST00000316428|LRRC31;LRRC31|p.I373S|1|0.1|ENSG00000114248|chr3:169851660-169851660|A/C|missense_variant;nc|ENSG00000114248|Q6UY01-2|LRRC31;nc|ENSG00000114248|Q6UY01-4|LRRC31 22.736283301280096 0.29844449404982915 2 {[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Y{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F} 9 -1 + 49.115 0 0 4.15 4.15 88.688 0 0 0 5.724826857755971 21.133768371847307 5.724826857755971 20.491176526380833 0 2.0228787452803374 0 0.2742275032520141 0 {[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Y{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{M(Oxidation (M))|F};{[ET]|[MV]}N{[YC]|[HE]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}N{[CP]|[EA]}{[NV]|[RG]}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GG{[YC]|[HE]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}N{[YC]|[HE]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}N[C(Carbamidomethyl (C))C][WK]P{M(Oxidation (M))|F};[YV][Y{M(Oxidation (M))|F}]Y[C(Carbamidomethyl (C))R]N;{[ET]|[MV]}[DN][HK]DYY;YY[{M(Oxidation (M))|F}V]Y[C(Carbamidomethyl (C))R]N 4.15;2.4186;1.7142;1.6406;1.6406;1.2827;0.93727;0.38968;0.34667 -;-;-;-;-;-;-;-;- 536 NaN NaN 155732.9 NaN 15979 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19953 82.142 NaN 227080 35 0 13200 0.264 + 35986 YYYGGGGA 8 66 404.16974423249127 806.3249355317826 2 404.158203125 MULTI HCD FTMS 0 0 0 19947 6564.16552734375 0.34432031511248223 -4 0.1114501953125 6 Unmodified _YYYGGGGA_ ENSG00000238205|ENST00000423387|MPC1L 2.8892196856762586 0.5377058178582064 2 YY[{I|L}A]E 5 6 20.502 0 0 2.5426 0 0 0 164.01302081914505 164.01302081914505 5.017346757967545 0 0 0 0 0.3054621874040891 1.6989700043360187 0 0 YY[{I|L}A]E 2.5426 - 20 NaN NaN 127484 NaN 15980 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19954 82.145 NaN 243730 35 0 22220 0.261 + 21777 QAICNLNITL 10 77 551.8004480389178 1101.5863431446355 2 551.8008422851562 MULTI HCD FTMS 0 0 0 19947 85808.046875 1 0 0 7 Unmodified _QAICNLNITL_ ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-7|ANK2 21.536976647645854 0.3096624038397699 2 PYTKNVT{I|L} 8 7 53.375 0 0 4.8452 0 0 167.06117446113439 0 167.06117446113439 0 37.855304213759055 0 0 0 0.5 0 0.3494850021680094 0 PYTKNVT{I|L} 4.8452 - 446 NaN NaN 137701.1 NaN 15981 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19955 82.149 NaN 248380 35 0 50110 0.261 + 30626 VPDGLDFIL 9 53 494.77104421239693 987.5275354915939 2 495.2730407714844 MULTI HCD FTMS 0 0 0 19947 48652.6796875 0.6997769269268257 2 -0.06233978271484375 8 Unmodified _VPDGLDFIL_ REV__ENSG00000159625|ENST00000360716|DRC7;REV__nc|ENSG00000159625|Q8IY82-2|DRC7 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 33.94 0 0 3.4369 0 0 596.2811756818375 0 596.2811756818375 0 24.960762528683702 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.4369 + + 26 NaN NaN 120432.7 NaN 15982 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19956 82.152 NaN 166800 35 0 30649 0.261 + 34579 YPLYDLDL 8 46 506.2550795121934 1010.4956060911868 2 506.2555847167969 MULTI HCD FTMS 0 0 0 19947 64118.9921875 0.7770996771060399 -1 0.02289581298828125 9 Unmodified _YPLYDLDL_ ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP 11.640296217721598 0.50814828952472 2 {I|L}D{I|L} 3 5 31.198 0 0 3.0874 0 0 651.291795799025 0 651.291795799025 0 21.901056208558032 0 0 0 0.5 0 0 0 + {I|L}D{I|L} 3.0874 + + 19 NaN NaN 116413.1 NaN 15983 3971 19947 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19958 82.157 NaN 1464600 35 0 316510 0.327 + -1 PNFRSHSTCA 10 106 588.7647566108086 1175.5149602884171 2 588.7650146484375 MULTI HCD FTMS 0 0 0 19957 753850.6875 0.8094263021164677 2 -0.05905914306640625 1 Carbamidomethyl (C) _PNFRSHSTC(Carbamidomethyl (C))A_ REV__ENSG00000096088|ENST00000373025|PGC;REV__nc|ENSG00000096088|P20142-2|PGC;REV__PGC|p.Q262Vfs*23|1|0.11|ENSG00000096088|chr6:41739916-41739931|CCAGCCGGAGGCCTGG/-|frameshift_variant 15.248480904072842 0.3684828712757339 2 YYA{I|L}EVSY 8 -1 87.113 0 0 7.4106 0 0 0 184.0394686334594 184.0394686334594 49.51287436874908 0 0 0 0 2.4489700043360187 2 0.8633643341304673 0 YYA{I|L}EVSY 7.4106 - 4111 + NaN NaN 315453.9 NaN 15984 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19959 82.161 NaN 786350 35 0 153760 0.261 + 6474 FPIPEEYTF 9 86 571.7741958671687 1141.5338388011373 2 571.7747802734375 MULTI HCD FTMS 0 0 0 19957 511987.5 0.997710155444163 1 -0.029510498046875 2 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 85.35673624503755 0.00464763827098139 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F} 9 0 + 79.359 0 0 6.9519 6.9519 91.137 0 0 0 10 12.385606273598313 10 10 0 1.9247425010840047 1.6989700043360187 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}[EP]EYT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP][YT]E{M(Oxidation (M))|F};[YV]YSS{I|L}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}TS{I|L}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}{I|L}{[MG]|[TS]}YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YTS{I|L}YT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[YD]|[{M(Oxidation (M))|F}M]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}P{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y{I|L}{[MG]|[TS]}YT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ET]|[MV]}[YE]{I|L}P{M(Oxidation (M))|F} 6.9519;6.0759;4.2791;4.0914;3.9991;3.8824;3.8448;3.7975;3.7282;3.5338 +;-;-;-;-;-;-;-;-;- + 1067 NaN NaN 215887.3 NaN 15985 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19960 82.165 NaN 1174600 35 0 217620 0.261 + 18360 MPLNVADLI 9 91 501.2706430734108 1000.5267332136216 2 501.270751953125 MULTI HCD FTMS 0 0 0 19957 757182.0625 0.5412133218683738 -5 0.14427947998046875 3 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 69.10491478415734 0.009377850133389008 2 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 58.7 0 0 5.8669 5.8669 90.007 0 0 0 8.194698805705613 35.86417158183798 8.194698805705613 12.708191265248615 0 1.5010912013506126 1.2218487496163564 0.2742275032520141 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}AV{[CP]|[EA]}AD{I|L}{I|L};{[TV]|[{I|L}S]}A{[CP]|[EA]}VAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}AVN{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{I|L}VN{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{[TV]|[{I|L}S]}[QP]{[ES]|[DT]|[{I|L}C]}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}AVGG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{I|L}VGG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}AV[QP][{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}A{I|L}V[QP][{M(Oxidation (M))|F}V] 5.8669;4.5967;4.0963;3.472;3.1711;2.5695;2.5517;2.2508;1.6599;1.359 -;-;-;-;-;-;-;-;-;- 721 NaN NaN 280647 NaN 15986 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19961 82.168 NaN 676440 35 0 99922 0.261 + 2402 DPLGYEIQL 9 82 524.2716864429646 1046.528819952729 2 524.2718505859375 MULTI HCD FTMS 0 0 0 19957 335213.5625 0.4032761401947455 4 -0.108062744140625 4 Unmodified _DPLGYEIQL_ ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107 27.628801355627647 0.12213550946336599 2 E{I|L}Q{I|L} 4 5 43.928 0 0 4.1975 0 0 545.2482834287422 0 545.2482834287422 0 27.730012720637376 0 0 0 1.3494850021680094 0 0 0 + E{I|L}Q{I|L} 4.1975 + + 240 NaN NaN 206205.1 NaN 15987 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19962 82.172 NaN 843270 35 0 51882 0.261 + 32147 VYSLQQFGF 9 103 544.7745087794785 1087.534464625757 2 544.7744750976562 MULTI HCD FTMS 0 0 0 19957 513715.0625 1 0 0 5 Unmodified _VYSLQQFGF_ ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L 134.295615338601 0.00034446139420701925 2 [YV]S{I|L}QQ{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 98.943 0 0 9.0979 9.0979 93.484 0 0 0 12.632192780232785 52.22988165616712 12.632192780232785 9.208187539523749 0 3.1307196863200843 1 1.4489700043360187 0.9604093769761876 + + [YV]S{I|L}QQ{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S{I|L}Q[AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S{I|L}[AG]Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YV]S{I|L}[AG][AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}V[YT]Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}V[YT][AG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V]{[CA]|SS}Q{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[SA]|[TG]}[YG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}V[TA][YG]{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[WQ][DP]V{I|L}SP{M(Oxidation (M))|F} 9.0979;8.2512;8.2512;6.5254;5.7382;4.8915;4.4454;3.2836;3.0488;2.8072 +;-;-;-;-;-;-;-;-;- + 2680 NaN NaN 219377.6 NaN 15988 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19963 82.175 NaN 665190 35 0 152320 0.261 -1 QCNCGTGTYF 10 61 604.2294374802436 1206.4443220272872 2 604.2295532226562 MULTI HCD FTMS 0 0 0 19957 495422 0.802927215566518 2 -0.05905914306640625 6 2 Carbamidomethyl (C) _QC(Carbamidomethyl (C))NC(Carbamidomethyl (C))GTGTYF_ ENST00000308478.9_1_7:110762636-110762723:+|nuORF 2.9952420565917617 0.4594494122822477 2 VSY{M(Oxidation (M))|F} 4 -1 27.467 0 0 2.2767 0 0 692.1994878772146 0 692.1994878772146 0 22.862526176977056 0 0 0 1 0 0 0 VSY{M(Oxidation (M))|F} 2.2767 - 27 NaN NaN 196214.1 NaN 15989 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19964 82.178 NaN 377090 35 0 48223 0.262 + 3178 EAVVFEAVL 9 66 488.77125490858595 975.5279568839719 2 488.7713623046875 MULTI HCD FTMS 0 0 0 19957 181579.609375 0.5637219899742614 4 -0.108062744140625 7 Unmodified _EAVVFEAVL_ BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6 71.13359017698441 0.008721403657255008 2 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L} 9 2 + 58.612 0 0 6.0082 6.0082 85.359 0 0 0 3.3099321904142442 16.293256987620524 3.3099321904142442 3.3099321904142442 0 1.774227503252014 0 1.3737125054200234 0 {[VA]|[{I|L}G]}EV{M(Oxidation (M))|F}EAV{I|L};{I|L}D{I|L}G{M(Oxidation (M))|F}EAV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[MG]|[TS]}EAV{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WM]AV{I|L};{I|L}MW{[DS]|[MA]|[CV]|TT}{I|L}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[MG]|[TS]}[W{I|L}]{I|L} 6.0082;5.6689;4.1875;3.6006;2.3133;0.85999 -;-;-;-;-;- 416 NaN NaN 151369.6 NaN 15990 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19965 82.182 NaN 391250 35 0 24325 0.261 -1 0 90 512.2615978553689 1022.5086427775378 2 512.26171875 MULTI HCD FTMS 0 0 0 19957 70481.828125 0.39001725527737663 -5 0.14427947998046875 8 NaN NaN 2 NS[YG]{I|L}PE 7 -1 27.03 0 0 2.6435 0 0 244.17866713691564 0 244.17866713691564 0 6.061150847269943 0 0 0 1.086696871556164 0 0 0 NS[YG]{I|L}PE 2.6435 - 1112 NaN NaN 153046.4 NaN 15991 3972 19957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19967 82.187 NaN 1772900 35 0 149010 0.327 + 28902 TWFTAGAKLLF 11 108 627.8475655601902 1253.6805781871803 2 627.84765625 MULTI HCD FTMS 0 0 0 19966 1164224.75 0.8505191575970203 5 -0.12425994873046875 1 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 143.21322497773306 0.00017638723029311283 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F} 11 0 + 106.28 0 0 8.4773 8.4773 90.619 0 0 0 3.2210667880990513 64.42399471964777 3.2210667880990513 6.0912231267376455 0 3.524227503252014 0 2.2856668758921828 0 + + {[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]TTAGAK{I|L}{I|L}{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]TTAQK{I|L}{I|L}{M(Oxidation (M))|F};[W{M(Oxidation (M))|F}]TTQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGA{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGRR{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{I|L}{I|L}K[HV]GAAAD{I|L}{M(Oxidation (M))|F} 8.4773;7.9915;7.5357;7.4182;6.9323;6.4766;6.2268;6.1962;5.7409;5.341 +;-;-;-;-;-;-;-;-;- + 6719 NaN NaN 365008.9 NaN 15992 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19968 82.191 NaN 1282100 35 0 187000 0.261 + 27931 TENDIYNFF 9 99 581.7557496476726 1161.496946362145 2 581.7559814453125 MULTI HCD FTMS 0 0 0 19966 776843.5625 0.6896392790930527 1 -0.02954864501953125 2 Unmodified _TENDIYNFF_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 129.77232118876745 0.0006187813247758304 2 {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.452 0 0 6.9266 6.9266 90.125 0 0 0 6.267186419914097 43.452264012182695 6.267186419914097 9.208187539523749 0 2.4826446478103827 0 1.7971062485323515 1.2302046884880937 + + {[ET]|[MV]}ND{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}ND{I|L}YGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGD{I|L}YN{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}NDVYQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}GGDVYQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T]DDNYQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}VDNYQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}N[NP]YVYY 6.9266;6.1338;5.806;4.6681;3.8753;2.9634;2.9634;0.04614 +;-;-;-;-;-;-;- + 2124 NaN NaN 292015.2 NaN 15993 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19969 82.195 NaN 740220 35 0 26217 0.261 + 28840 TVGLLASTQR 10 100 523.3037994738958 1044.5930460145914 2 523.3038330078125 MULTI HCD FTMS 0 0 0 19966 406118.4375 0.18333182106118845 -23 0.6501541137695312 3 Unmodified _TVGLLASTQR_ REV__ENST00000465904.1_1_6:109767733-109768483:-|nuORF 4.5288652416199255 0.4513317009562028 2 V 1 -1 7.4743 0 0 0.71552 0 0 718.399272676504 224.09751306705314 942.4967857435571 0 0 0 0 0 0.5 0 0 0 V 0.71552 + + 136 + NaN NaN 214565.6 NaN 15994 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19970 82.198 NaN 646440 35 0 51283 0.261 + 13594 KYPENFFLL 9 96 585.8131605635726 1169.6117681939452 2 585.813232421875 MULTI HCD FTMS 0 0 0 19966 260177.0625 0.0013225516713931639 248 -5.852302551269531 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 55.50274090549119 0.023872834264864425 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 50.548 0 0 4.3218 4.3218 85.978 0 0 0 2.949171771974761 8.27780010543082 2.949171771974761 9.208187539523749 0 1.8754223615525998 0 0.4247425010840047 0.5484550065040282 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[EP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SV[TA]K{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}S{[SA]|[TG]}K{I|L}{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}[EP]{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}E{M(Oxidation (M))|F}[NP]K{I|L};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SVSVVK;[Y{M(Oxidation (M))|F}]{I|L}ESV{[RE]|[WV]}K;[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SV[TA]{I|L}K 4.3218;3.5345;2.5416;2.3908;2.3667;2.0656;2.0367;1.8579;1.7597;1.7266 +;-;-;-;-;-;-;-;-;- + 1658 NaN NaN 192007.9 NaN 15995 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19971 82.201 NaN 424240 35 0 57491 0.261 + 16473 LSVGPDGKPF 10 62 508.7742150857585 1015.533877238317 2 508.7884826660156 MULTI HCD FTMS 0 0 0 19966 46535.5546875 0.6399401073186433 2 -0.04906463623046875 5 Unmodified _LSVGPDGKPF_ ENST00000607100.5_1_2:20075631-20075718:+|nuORF 13.90604991867851 0.3810395177745597 2 {[TV]|[{I|L}S]}V[RN]EVS 8 7 31.151 0 0 3.0675 0 0 0 128.04336498741762 128.04336498741762 4.240247145042062 0 0 0 0 0 1.3979400086720375 0.3807196863200844 0 {[TV]|[{I|L}S]}V[RN]EVS 3.0675 - 150 NaN NaN 152303.2 NaN 15996 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19972 82.204 NaN 337970 35 0 77176 0.261 + -1 CVPCLEDLDE 10 73 596.7477163069368 1191.4808796806735 2 596.7477416992188 MULTI HCD FTMS 0 0 0 19966 147891.8125 0.5642973344334211 3 -0.07855224609375 6 Carbamidomethyl (C) _CVPC(Carbamidomethyl (C))LEDLDE_ REV__ENSG00000136931|ENST00000373588|NR5A1 10.073929032068715 0.4168838835836452 2 E[YV]YE 5 -1 21.338 0 0 1.7909 0 0 490.1974354474625 0 490.1974354474625 0 -1.8495564253589691 -1.8495564253589691 0 0 0 0 0.8494850021680094 0 E[YV]YE 1.7909 - 50 NaN NaN 140342.3 NaN 15997 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19973 82.208 NaN 158830 35 0 19607 0.262 + 18173 MPDIDFNL 8 51 482.72613961483887 963.4377262964778 2 482.72601318359375 MULTI HCD FTMS 0 0 0 19966 69192.671875 0.3941092546187122 8 -0.19934844970703125 7 Unmodified _MPDIDFNL_ AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant;ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 {NN|[MP]|[D{I|L}]|[EV]}MPD{M(Oxidation (M))|F}N{I|L} 8 2 + 45.878 0 0 4.7619 4.7619 87.302 0 0 0 5.484550065040281 32.38351285388511 5.484550065040281 9.262137858390808 0 0.4247425010840047 0 0 0.3494850021680094 {NN|[MP]|[D{I|L}]|[EV]}MPD{M(Oxidation (M))|F}N{I|L};{NN|[MP]|[D{I|L}]|[EV]}MPD{M(Oxidation (M))|F}GG{I|L} 4.7619;3.8006 -;- 94 NaN NaN 112894.7 NaN 15998 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19974 82.211 NaN 312590 35 0 54447 0.261 + -1 SWGPFGPCF 9 65 527.725692996901 1053.4368330606019 2 527.7259521484375 MULTI HCD FTMS 0 0 0 19966 105693.890625 0.8073653188933009 -3 0.085235595703125 8 Carbamidomethyl (C) _SWGPFGPC(Carbamidomethyl (C))F_ REV__ENST00000252050.8_2_6:43190351-43192035:+|nuORF 4.75600775471527 0.31496297302216103 2 {I|L}{I|L} 2 -1 15.573 0 0 1.4783 0 0 809.2570667951187 0 809.2570667951187 0 0.08864383480215565 0 0 0 0 0 0 0 {I|L}{I|L} 1.4783 - 81 NaN NaN 141457.8 NaN 15999 3973 19966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19976 82.216 NaN 3370900 35 0 408830 0.327 + 17906 MILELDPTF 9 80 547.7754196984221 1093.536286463644 2 547.7758178710938 MULTI HCD FTMS 0 0 0 19975 2160910.25 0.3604606531514719 -8 0.23285675048828125 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 107.58 0 0 9.8375 9.8375 97.768 0 0 0 16.241188331672788 44.97908635784347 16.241188331672788 30.555847141874892 0 3.0114393726401687 1.6989700043360187 1.363982988912431 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};[TP]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]E{I|L}{[QN]|[E{I|L}]|[KN]} 9.8375;7.0433;6.9295;6.6368;5.3294;4.8061;4.7648;4.6585;4.0112;3.9057 +;-;-;-;-;-;-;-;-;- + 1294 NaN NaN 611477.9 NaN 16000 3974 19975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19977 82.22 NaN 1618200 35 0 181370 0.261 + 1077 AYICMYVSGL 10 101 560.2642402560249 1118.5139275788497 2 560.2645874023438 MULTI HCD FTMS 0 0 0 19975 940969.1875 0.8439546962661405 2 -0.04900360107421875 2 Unmodified _AYICMYVSGL_ REV__ENST00000366645.1_1_1:231471248-231471314:-|nuORF 48.345845343767074 0.08380532769255708 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YC]|[HE]}{I|L}GT{I|L}C{I|L} 10 -1 + 99.614 0 0 8.9059 8.9059 88.925 0 0 0 5.9640156839957825 5.9640156839957825 5.9640156839957825 0.682503180159344 0 1.8807196863200843 1.6989700043360187 1.841129063296272 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[YC]|[HE]}{I|L}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{I|L}{[YC]|[HE]}C{I|L};AY{I|L}TG{I|L}{[YC]|[HE]}C{I|L};AY{[YC]|[HE]}{I|L}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TG{[YC]|[HE]}{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}G{I|L}{[YC]|[HE]}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{I|L}G{[YC]|[HE]}{I|L}C{I|L};AY{I|L}{[YC]|[HE]}GT{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[YC(Carbamidomethyl (C))]{I|L}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YC(Carbamidomethyl (C))]T{I|L}C{I|L} 8.9059;8.8449;8.3727;8.3117;7.9509;7.5448;7.5448;7.4177;7.1229;7.0163 -;-;-;-;-;-;-;-;-;- 4516 NaN NaN 338122.6 NaN 16001 3974 19975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19978 82.224 NaN 625950 35 0 65410 0.261 + 5382 FGRNAREALP 10 81 565.808214166103 1129.6018753990058 2 566.2974853515625 MULTI HCD FTMS 0 0 0 19975 23267.224609375 0.4896333271708661 6 -0.15361785888671875 3 Unmodified _FGRNAREALP_ REV__ENSG00000138109|ENST00000260682|CYP2C9;REV__ENSG00000165841|ENST00000371321|CYP2C19;REV__nc|ENSG00000138109|P11712-2|CYP2C9 8.745405648335112 0.42901288225909884 2 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 8 -1 23.193 0 0 2.0532 0 0 164.10197018544505 0 164.10197018544505 0 6.114328194166561 0 0 0 0 0 0.3807196863200844 0 V{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NP]V{M(Oxidation (M))|F} 2.0532 - 456 + NaN NaN 178789.4 NaN 16002 3974 19975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19979 82.227 NaN 273480 35 0 31826 0.261 + 6209 FPENYVPTVF 10 62 606.8007917785204 1211.5870306238407 2 606.8007202148438 MULTI HCD FTMS 0 0 0 19975 80352.5078125 0.5083963247999879 4 -0.0947113037109375 4 Unmodified _FPENYVPTVF_ ENSG00000115963|ENST00000263895|RND3 23.789781309258295 0.28859042913526417 2 [Y{I|L}][VS]V 5 7 28.97 0 0 2.391 0 0 0 647.247955266672 647.247955266672 6.7632983043318085 0 0 0 0 0.7887254899964358 2 0 0 [Y{I|L}][VS]V 2.391 - 26 NaN NaN 132448.4 NaN 16003 3974 19975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19980 82.231 NaN 291360 35 0 28558 0.261 -1 MLLHSLPCF 9 64 538.7690780127797 1075.5236030923593 2 539.2682495117188 MULTI HCD FTMS 0 0 0 19975 38329.4296875 0.4480533357102061 -12 0.3443603515625 5 Oxidation (M) _M(Oxidation (M))LLHSLPCF_ ENSG00000047621|ENST00000261250|C12orf4;ENST00000535030.1_1_12:4643313-4645372:-|nuORF 30.224811164608877 0.11021837014094292 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D 6 -1 53.689 0 0 4.9919 0 0 0 342.14349530554176 342.14349530554176 36.343115646969935 0 0 0 0 2.305462187404089 1.6989700043360187 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D 4.9919 - 176 NaN NaN 148080.5 NaN 16004 3974 19975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19982 82.236 NaN 581890 35 0 111760 0.327 + 11330 IYMDTLNIF 9 75 573.2811960784773 1144.5478392237544 2 573.2813110351562 MULTI HCD FTMS 0 0 0 19981 368374.46875 0.43170234234382043 10 -0.2682952880859375 1 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 103.74828524460852 0.00396301343438984 2 {I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L}{M(Oxidation (M))|F} 8 4 68.365 0 0 5.9731 0 0 165.08009724232187 0 165.08009724232187 0 54.98896295595124 0 0 0 0.5 0 1.0356668758921828 1.1861818737241734 {I|L}N[C(Carbamidomethyl (C))S]{I|L}N{I|L}{M(Oxidation (M))|F} 5.9731 - 484 + NaN NaN 179826.8 NaN 16005 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19983 82.24 NaN 1006900 35 0 121600 0.261 + 32203 VYTFQFQDF 9 96 597.7773071270942 1193.5400613209883 2 597.777587890625 MULTI HCD FTMS 0 0 0 19981 318487.1875 0.30638505444566005 -4 0.1114044189453125 2 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 155.95374464489888 2.532374632554729E-06 2 [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 0 + 106.24 0 0 8.9016 8.9016 91.125 0 0 0 6.096882327605158 16.478174818886373 6.096882327605158 6.096882327605158 0 2.6747425010840047 1.0969100130080565 1.9291746928241125 0.6382104921644451 + + [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}V{[MG]|[TS]}{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F} 8.9016;8.3907;8.1301;7.8372;7.6192;7.3264;6.9787;6.8275;6.6541;6.3167 +;-;-;-;-;-;-;-;-;- + 1946 NaN NaN 247479.6 NaN 16006 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19984 82.244 NaN 348500 35 0 20911 0.261 -1 0 87 531.8170833266972 1061.6196137201944 2 531.8171997070312 MULTI HCD FTMS 0 0 0 19981 257586.25 0.20667320912688245 -21 0.5909423828125 3 NaN NaN 2 D 1 -1 6.7217 0 0 0.63315 0 0 61.053798005303925 882.4942721002561 943.5480701055601 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.63315 - 55 + NaN NaN 147458.2 NaN 16007 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19985 82.247 NaN 347370 35 0 33772 0.261 + 15166 LMSLIINTF 9 76 534.2939490319458 1066.5733451306915 2 534.2943725585938 MULTI HCD FTMS 0 0 0 19981 150807.25 0.046568149503747276 -15 0.42291259765625 4 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 103.35351024395868 0.004027461563756449 2 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 4 71.788 0 0 6.7307 0 0 460.2360781402602 0 460.2360781402602 0 48.512400878869414 0 0 0 2.305462187404089 0 1.4876954943324545 0.3054621874040891 + {I|L}{I|L}NT{M(Oxidation (M))|F} 6.7307 + + 586 + NaN NaN 144777.3 NaN 16008 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19986 82.25 NaN 222260 35 0 22311 0.261 -1 LNQFPCENL 9 62 567.7660838831915 1133.517614833183 2 569.2828369140625 MULTI HCD FTMS 0 0 0 19981 7271.80419921875 0.23665073343563806 -4 0.1114044189453125 5 Carbamidomethyl (C) _LNQFPC(Carbamidomethyl (C))ENL_ ENSG00000100304|ENST00000216129|TTLL12 10.823927491677226 0.26684000660059787 2 QNQ{I|L} 4 -1 28.928 0 0 2.552 0 0 0 647.2480085788849 647.2480085788849 14.323806533759438 0 0 0 0 0 0 0 0 QNQ{I|L} 2.552 - 529 + NaN NaN 123685.6 NaN 16009 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19987 82.253 NaN 94989 35 0 13982 0.261 + 30252 VKCGYFYLEF 10 37 634.8056534147986 1267.596753896397 2 634.80615234375 MULTI HCD FTMS 0 0 0 19981 29771.44921875 0.4626995092337847 -11 0.29813385009765625 6 Unmodified _VKCGYFYLEF_ ENSG00000253719|ENST00000519948|ATXN7L3B 8.745405648335112 0.42901288225909884 2 {I|L}E{M(Oxidation (M))|F} 3 7 30.445 0 0 2.4018 0 0 860.395311424025 0 860.395311424025 0 27.68110275043508 0 0 0 0.4247425010840047 0 0 0 + {I|L}E{M(Oxidation (M))|F} 2.4018 + + 8 NaN NaN 107352.6 NaN 16010 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19988 82.257 NaN 157140 35 0 28801 0.263 + 15947 LPPLLPLGPL 10 47 515.339014735614 1028.663476538028 2 515.3390502929688 MULTI HCD FTMS 0 0 0 19981 6571.978515625 0.11866014187224333 3 -0.0751953125 7 Unmodified _LPPLLPLGPL_ REV__ENST00000559215.5_1_15:78730527-78730662:+|nuORF 4.3292370932331545 0.45238836448149167 2 {I|L}P 2 -1 17.959 0 0 1.7458 0 0 0 815.5054415338499 815.5054415338499 10.969100130080562 0 0 0 0 0 0 0 0 {I|L}P 1.7458 + + 47 + NaN NaN 120131.2 NaN 16011 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19989 82.26 NaN 130970 35 0 19180 0.261 + 28367 TPDVRLRT 8 41 479.27746304091426 956.5403731486285 2 479.277099609375 MULTI HCD FTMS 0 0 0 19981 28849.994140625 0.20369144766025618 13 -0.34677886962890625 8 Unmodified _TPDVRLRT_ REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF 5.230669730166228 0.5342319408533849 2 [DP]TV 4 -1 12.792 0 0 1.3373 0 0 0 541.3165626840379 541.3165626840379 4.719712763997562 0 0 0 0 0 0 0.3494850021680094 0 [DP]TV 1.3373 - 15 NaN NaN 99193.6 NaN 16012 3975 19981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19991 82.265 NaN 2988800 35 0 683950 0.327 + 35351 YYALEVSYF 9 102 577.773813394787 1153.533073856374 2 577.7742309570312 MULTI HCD FTMS 0 0 0 19990 1422154.625 0.2764025637729085 6 -0.15704345703125 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 117.59872219059416 0.0017018906413822257 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F} 9 2 + 90.332 0 0 7.8309 7.8309 90.34 0 0 0 7.147642715192504 69.86469263144178 7.147642715192504 7.7815125038364386 0 2.774227503252014 0 1.3996498648046138 0 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};YYA{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}TVDY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}V{[QN]|[E{I|L}]|[KN]}SY{M(Oxidation (M))|F};YYA{I|L}TVDY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}SY{M(Oxidation (M))|F};[Y{I|L}][YG]{[QN]|[E{I|L}]|[KN]}SY{M(Oxidation (M))|F};YYAV{[QN]|[E{I|L}]|[KN]}SY{M(Oxidation (M))|F};[HT]WWKSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}V[{I|L}T]DY{M(Oxidation (M))|F} 7.8309;7.1564;5.1684;4.8085;4.4938;4.3422;4.233;4.1339;3.6471;3.4357 -;+;-;-;-;-;-;-;-;- + 2856 NaN NaN 541646.4 NaN 16013 3976 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19992 82.269 NaN 302950 35 0 53196 0.261 + 24999 RYVPGLLLSYL 11 52 647.3819668765617 1292.7493808199233 2 647.3819580078125 MULTI HCD FTMS 0 0 0 19990 101054.15625 0.6340693969196272 4 -0.1046142578125 2 Unmodified _RYVPGLLLSYL_ ENSG00000141699|ENST00000309428|RETREG3 33.4449034751529 0.1791669456720762 2 P{I|L}G{I|L}{I|L}S[Y{I|L}] 8 5 57.16 0 0 4.4216 0 0 418.2323446155617 0 418.2323446155617 0 50.17010980380633 0 0 0 2.305462187404089 0 0.5 0 P{I|L}G{I|L}{I|L}S[Y{I|L}] 4.4216 - 64 NaN NaN 158402.3 NaN 16014 3976 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19993 82.273 NaN 344700 35 0 59140 0.261 + 19895 NYFDEQFEF 9 54 619.7538586853301 1237.49316443746 2 619.7532348632812 MULTI HCD FTMS 0 0 0 19990 146482.84375 0.30911607507441285 -5 0.14089202880859375 3 Unmodified _NYFDEQFEF_ ENSG00000162639|ENST00000651461|HENMT1 69.33821966488729 0.009302356455414924 2 DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 73.977 0 0 5.978 0 0 424.17479140449376 0 424.17479140449376 0 59.28456906244314 0 0 0 2.2302046884880937 0 0.3494850021680094 1.1549471895720984 + DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.978 + + 306 NaN NaN 147500.3 NaN 16015 3976 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19994 82.276 NaN 156650 35 0 8117.1 0.261 + 15189 LMYLIELVL 9 61 553.8298454346881 1105.645137936176 2 553.8299560546875 MULTI HCD FTMS 0 0 0 19990 65392.20703125 0.1637097239815213 -20 0.557952880859375 4 Unmodified _LMYLIELVL_ REV__ENSG00000146263|ENST00000683635|MMS22L;REV__ENST00000506256.5_1_6:97707503-97720651:-|nuORF;REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF;REV__ENST00000509383.5_1_6:97679279-97717985:-|nuORF;REV__ENST00000511335.5_1_6:97715738-97720957:-|nuORF 2.302733041254933 0.33356062215410776 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[TV]|[{I|L}S]}[C(Carbamidomethyl (C))R]TP 8 -1 21.872 0 0 1.9782 0 0 0 144.1405623912987 144.1405623912987 14.882287586051106 0 0 0 0 0 1.3979400086720375 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[TV]|[{I|L}S]}[C(Carbamidomethyl (C))R]TP 1.9782 - 70 NaN NaN 131656.8 NaN 16016 3976 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19995 82.28 NaN 277120 35 0 106160 0.261 -1 0 34 491.38448366112914 490.37720719452915 1 491.384521484375 MULTI HCD FTMS 0 0 0 19990 102623.640625 0.3060538134353626 -6 0.163787841796875 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 123108.5 NaN 16017 3976 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19996 82.283 NaN 71248 35 0 7654.8 0.261 + 20924 PLAARKAW 8 38 456.7724914550781 NaN 0 456.7724914550781 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _PLAARKAW_ REV__ENSG00000062485|ENST00000351328|CS;REV__ENST00000546621.5_1_12:56668606-56679804:-|nuORF;REV__ENST00000547449.1_1_12:56676173-56676733:-|nuORF;REV__ENST00000547912.1_1_12:56676173-56676410:-|nuORF 2.302733041254933 0.38822285293237185 2 D 1 -1 4.6041 0 0 0.50509 0 0 181.17325172972625 612.3076265924436 793.4808783221699 0 0 0 0 0 0 0 0 0 D 0.50509 - 2 + NaN NaN 101541.4 NaN 16018 3976 19990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19998 82.288 NaN 728980 35 0 115690 0.327 -1 MLSNLYMTL 9 79 580.2729211389412 NaN 0 580.287109375 PEAK HCD FTMS 0 0 0 19997 18848.322265625 0.6863500398068957 5 -0.134246826171875 1 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))LSNLYM(Oxidation (M))TL_ EFCAB13|p.D159N|1|0.23|ENSG00000178852|chr17:47345056-47345056|G/A|missense_variant;EFCAB13|p.N362Ifs*5|1|0.17|ENSG00000178852|chr17:47374674-47374674|A/-|frameshift_variant;ENSG00000178852|ENST00000331493|EFCAB13;ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13 19.256988751693697 0.19238547928067054 2 C(Carbamidomethyl (C))QYYT 5 -1 30.495 0 0 2.6322 0 0 165.07718606465875 275.14011560611567 440.2173016707744 0 0 0 0 0 0 0 1.8494850021680094 0.3494850021680094 C(Carbamidomethyl (C))QYYT 2.6322 - 401 + NaN NaN 200830.1 NaN 16019 3977 19997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 19999 82.292 NaN 742030 35 0 82088 0.261 + 6880 FPTVVIYVM 9 80 542.7911424624269 1083.5677319916538 2 542.7913208007812 MULTI HCD FTMS 0 0 0 19997 343840.8125 0.6403804810967123 9 -0.24214935302734375 2 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 63.562846038646086 0.012597299157545023 2 [Y{I|L}]AP[{I|L}V]YV{M(Oxidation (M))|F} 9 4 + 53.763 0 0 4.9617 4.9617 90.153 0 0 0 5.85103060017687 29.818620670878033 5.85103060017687 24.60409376976187 0 2.3182503180159344 1.2218487496163564 0 0 [Y{I|L}]AP[{I|L}V]YV{M(Oxidation (M))|F};[YT]Y[{I|L}V]PVVM;[Y{I|L}]V[YT]PVVM;[Q{I|L}]{[QG]|[NA]}VNPS{[QN]|[E{I|L}]|[KN]};[YV]{I|L}[YT]PVVM;[Q{I|L}][RN]QPS{[QN]|[E{I|L}]|[KN]};{[ES]|[DT]|[{I|L}C]}[{I|L}V]P{I|L}Y[YT];{[ES]|[DT]|[{I|L}C]}[{I|L}P]V{I|L}Y[YT];[Q{I|L}]{[QG]|[NA]}VGGPS{[QN]|[E{I|L}]|[KN]};[YT][KT]{[QD]|[EN]|[WG]|[KD]|[RS]}S{[QN]|[E{I|L}]|[KN]} 4.9617;2.691;2.3402;1.1444;0.71043;0.66868;0.3555;0.30556;0.29867;0.1478 -;-;-;-;-;-;-;-;-;- 820 NaN NaN 207408.5 NaN 16020 3977 19997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20000 82.296 NaN 625170 35 0 79707 0.261 + -1 MEHEPCTPF 9 80 574.2312068994768 1146.4478608657535 2 574.231689453125 MULTI HCD FTMS 0 0 0 19997 273296.96875 0.6707431237636641 -6 0.16368865966796875 3 Carbamidomethyl (C) _MEHEPC(Carbamidomethyl (C))TPF_ REV__ENSG00000119283|ENST00000366653|TRIM67;REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67 7.289230182591677 0.29575926068275815 2 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[TP]{M(Oxidation (M))|F} 8 -1 34.223 0 0 2.9852 0 0 165.9771173861937 0 165.9771173861937 0 19.274692464335374 0 0 0 1.2887254899964358 0 0.2742275032520141 0.6989700043360187 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[TP]{M(Oxidation (M))|F} 2.9852 - 600 + NaN NaN 188070.8 NaN 16021 3977 19997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20001 82.299 NaN 832260 35 0 70917 0.261 + 25605 SGAHTEPWTF 10 105 566.7588628218106 NaN 0 566.7478637695312 PEAK HCD FTMS 0 0 0 19997 59341.7734375 0.28673393134222525 -3 0.07180023193359375 4 Unmodified _SGAHTEPWTF_ ENSG00000009765|ENST00000344419|IYD;nc|ENSG00000009765|Q6PHW0-3|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-7|IYD 18.1463463914782 0.29565035219289926 2 DHSYT 5 8 17.995 0 0 1.5903 0 0 363.1989441977741 162.05591760806877 525.2548618058429 0 0 0 0 0 0.5866968715561641 0 0.2742275032520141 0 DHSYT 1.5903 - 1335 + NaN NaN 222045.1 NaN 16022 3977 19997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20002 82.302 NaN 101320 35 0 13965 0.261 + -1 LQMSQYIKLF 10 50 643.8427606343179 1285.6709683354356 2 643.8427734375 MULTI HCD FTMS 0 0 0 19997 27295.806640625 0.2771479149673109 8 -0.21601104736328125 5 Oxidation (M) _LQM(Oxidation (M))SQYIKLF_ REV__ENSG00000111077|ENST00000314250|TNS2;REV__ENST00000549311.7_1_12:53443879-53456445:+|nuORF;REV__nc|ENSG00000111077|Q63HR2-2|TNS2;REV__nc|ENSG00000111077|Q63HR2-4|TNS2;REV__nc|ENSG00000111077|Q63HR2-5|TNS2;REV__nc|ENSG00000111077|Q63HR2-6|TNS2;REV__TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant 2.9952420565917617 0.4594494122822477 2 T{M(Oxidation (M))|F}[WD] 4 -1 10.177 0 0 0.79159 0 0 718.4380360334 0 718.4380360334 0 4.23516269895728 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}[WD] 0.79159 - 10 NaN NaN 109472 NaN 16023 3977 19997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20003 82.306 NaN 89137 35 0 9872.2 0.264 + -1 NTMGMTDFMF 10 53 404.1577121053184 1209.4513069161553 3 404.1695556640625 MULTI HCD FTMS 0 0 0 19997 8390.0947265625 0.08267115569648346 7 -0.17656707763671875 6 Oxidation (M) _NTM(Oxidation (M))GMTDFMF_ REV__ENSG00000203734|ENST00000541398|ECT2L 3.5870582119611467 0.4563168352879256 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2803 0 0 1044.3724780360756 0 1044.3724780360756 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2803 + + 6 + NaN NaN 121008 NaN 16024 3977 19997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20005 82.311 NaN 1571100 35 0 316770 0.327 + 18361 MPLNVADLI 9 95 501.2706430734108 1000.5267332136216 2 501.2707214355469 MULTI HCD FTMS 0 0 0 20004 1272093 0.9092577761052089 1 -0.03277587890625 1 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 78.7280429016045 0.006263961847259105 2 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 72.034 0 0 7.1996 7.1996 94.701 0 0 0 11.896512253176823 45.18930178484529 11.896512253176823 36.15865011156764 0 1.774227503252014 1 0.5941876774005248 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}{[VA]|[{I|L}G]}{[CP]|[EA]}AD{I|L}{I|L};{[TV]|[{I|L}S]}[QP]{[ES]|[DT]|[{I|L}C]}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[{I|L}P]{[DS]|[MA]|[CV]|TT};{NN|[MP]|[D{I|L}]|[EV]}{I|L}AV[QP][{M(Oxidation (M))|F}V];{NN|[MP]|[D{I|L}]|[EV]}A{I|L}V[QP][{M(Oxidation (M))|F}V] 7.1996;3.5857;2.5906;2.115;1.7293;1.3316 -;-;-;-;-;- 632 NaN NaN 340461.9 NaN 16025 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20006 82.315 NaN 612720 35 0 57533 0.261 + 6642 FPLSPDWQV 9 95 544.7745087794785 1087.534464625757 2 544.7745971679688 MULTI HCD FTMS 0 0 0 20004 300946.0625 0.5858229288342115 6 -0.153656005859375 2 Unmodified _FPLSPDWQV_ ENSG00000254772|ENST00000329251|EEF1G;ENST00000434365.1_1_X:114938170-114938437:+|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;nc|ENSG00000254772|P26641-2|EEF1G 65.23502041540118 0.010630085227462206 2 QW{[WT]|[RM]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 7 9 48.624 0 0 4.471 0 0 117.08028433216732 0 117.08028433216732 0 32.386671539630555 0 0 0 1.5994850021680094 0 0.5941876774005248 0.2742275032520141 QW{[WT]|[RM]}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 4.471 - 683 + NaN NaN 179303.6 NaN 16026 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20007 82.319 NaN 1083700 35 0 273310 0.261 + 31454 VYDPLFSQL 9 62 541.2822145297783 1080.5498761263566 2 541.2822875976562 MULTI HCD FTMS 0 0 0 20004 514546 0.6918659153970356 -4 0.0947113037109375 3 Unmodified _VYDPLFSQL_ ENSG00000100104|ENST00000215917|SRRD 110.5527297667825 0.0028521687250969148 2 [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L} 9 0 + 90.962 0 0 8.4181 8.4181 93.904 0 0 0 2.179001828205486 2.179001828205486 2.179001828205486 11.387189367729235 0 3.110924374808178 1.3979400086720375 1.5356668758921828 0.6694451763165201 + + [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L};[YV]DP{I|L}{M(Oxidation (M))|F}S[AG]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VP{I|L}{M(Oxidation (M))|F}SQ{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VP{I|L}{M(Oxidation (M))|F}S[AG]{I|L};[YV]{[NV]|[RG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SQ{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[NV]|[RG]}SQ{I|L};[YV]DP{I|L}[{I|L}T]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};{[QS]|[NT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[KC]M{I|L};[YV]DP{I|L}{[NV]|[RG]}[YV];{[QS]|[NT]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L} 8.4181;7.3643;6.1891;5.337;4.6351;4.387;4.0148;3.7556;3.6127;3.3862 +;-;-;-;-;-;-;-;-;- + 451 + NaN NaN 254244.5 NaN 16027 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20008 82.322 NaN 486820 35 0 85742 0.261 + 6475 FPIPEEYTF 9 79 571.7741958671687 1141.5338388011373 2 571.7739868164062 MULTI HCD FTMS 0 0 0 20004 274575.15625 0.5350646682258704 7 -0.1930999755859375 4 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 85.35673624503755 0.00464763827098139 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F} 9 0 + 79.359 0 0 6.9519 6.9519 93.945 0 0 0 22.632192780232785 62.83137116318585 22.632192780232785 31.760912590556813 0 1.9247425010840047 1.6989700043360187 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP][YT]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y{I|L}{[MG]|[TS]}YT{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}{I|L}{[MG]|[TS]}YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YT{[TV]|[{I|L}S]}YT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[YD]|[{M(Oxidation (M))|F}M]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}P{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}T{[TV]|[{I|L}S]}YT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y{I|L}Y{[MG]|[TS]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]YE[EP]{I|L}P{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}{I|L}Y{[MG]|[TS]}T{M(Oxidation (M))|F} 6.9519;4.1696;4.0367;3.8824;3.6881;3.6433;3.5338;3.335;3.2305;3.1807 +;-;-;-;-;-;-;-;-;- + 499 NaN NaN 163183.3 NaN 16028 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20009 82.325 NaN 757660 35 0 74260 0.261 + -1 YSNDRMMPF 9 110 588.7459932827608 NaN 0 588.7649536132812 PEAK HCD FTMS 0 0 0 20004 22768.748046875 1 0 0 5 Oxidation (M) _YSNDRM(Oxidation (M))MPF_ REV__ENST00000299601.9_1_15:52258104-52258191:-|nuORF 13.50788311687929 0.22978952576613207 2 YA{I|L}EVSY 7 -1 18.778 0 0 1.5975 0 0 163.02121200843038 184.03998743228752 347.0611994407179 0 0 0 0 0 0 0 0.2614393726401688 0 YA{I|L}EVSY 1.5975 - 2094 + NaN NaN 208123.5 NaN 16029 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20010 82.329 NaN 350580 35 0 19908 0.261 + 25814 SLPLLCILF 9 97 509.80379454164563 1017.5930361500913 2 509.8034362792969 MULTI HCD FTMS 0 0 0 20004 120602.375 0.09531999689781409 51 -1.4351654052734375 6 Unmodified _SLPLLCILF_ ENST00000366769.7_1_1:227505320-227505512:-|nuORF 8.593279151180031 0.2858735984551981 2 S[KQ]QVP{[TV]|[{I|L}S]} 8 7 18.349 0 0 1.8032 0 0 132.12390859965075 0 132.12390859965075 0 4.369412063200656 0 0 0 0 0 0.850576203518622 0 S[KQ]QVP{[TV]|[{I|L}S]} 1.8032 - 410 + NaN NaN 153746.3 NaN 16030 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20011 82.332 NaN 251230 35 0 41403 0.261 + -1 CCSWGAGPAEA 11 52 604.2294374802436 1206.4443220272872 2 604.2293090820312 MULTI HCD FTMS 0 0 0 20004 64716.96484375 0.10488636431548946 8 -0.21923828125 7 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))C(Carbamidomethyl (C))SWGAGPAEA_ REV__ENST00000607598.2_1_8:9413493-9414024:-|nuORF 1.1933415558491238 0.4136870758253112 2 CDQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{[{M(Oxidation (M))|F}D]|MM} 9 -1 18.707 0 0 1.5506 0 0 61.008970397445246 0 61.008970397445246 0 1.7171311638593103 0 0 0 0 0 0 0 CDQ{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{[{M(Oxidation (M))|F}D]|MM} 1.5506 - 135 + NaN NaN 121319.1 NaN 16031 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20012 82.335 NaN 176140 35 0 19459 0.261 -1 YVINTCGQDF 10 60 608.7678152031439 1215.5210774730876 2 608.7686157226562 MULTI HCD FTMS 0 0 0 20004 92684.625 1 0 0 8 Carbamidomethyl (C) _YVINTC(Carbamidomethyl (C))GQDF_ ENSG00000111846|ENST00000495262|GCNT2;ENST00000459872.1_1_6:10557103-10619499:+|nuORF;ENST00000474983.5_1_6:10529144-10530083:+|nuORF;GCNT2|p.P196S|1|0.53|ENSG00000111846|chr6:10529497-10529497|C/T|missense_variant;nc|ENSG00000111846|Q8N0V5-2|GCNT2;nc|ENSG00000111846|Q8N0V5-3|GCNT2 31.26834338654808 0.2211790902911672 2 Q{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 7 -1 68.665 0 0 5.649 0 0 302.0880604474625 0 302.0880604474625 0 59.712082602336025 0 0 0 1.805462187404089 0 0.805462187404089 0.3494850021680094 Q{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TP{M(Oxidation (M))|F} 5.649 - 226 NaN NaN 120425 NaN 16032 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20013 82.339 NaN 460880 35 0 51548 0.261 + 29920 VFDVIIRCF 9 90 556.3021639519338 1110.5897749706676 2 556.3033447265625 MULTI HCD FTMS 0 0 0 20004 41592.53515625 0.4559690915184274 6 -0.153656005859375 9 Unmodified _VFDVIIRCF_ ENSG00000170445|ENST00000504156|HARS1;ENST00000502888.1_1_5:140062654-140070871:-|nuORF;ENST00000518126.5_1_5:140059363-140070889:-|nuORF;nc|ENSG00000170445|P12081-4|HARS1 63.960520009940105 0.0120409805053046 2 [{M(Oxidation (M))|F}V]DV{I|L}{I|L}RC{M(Oxidation (M))|F} 9 0 [{M(Oxidation (M))|F}V] + + 58.938 2.8432 1.1551 5.3069 5.3069 62.765 0 0 0 0 30.661837734644593 0 0 0 2.7658715643802765 0 0 0 + + [{M(Oxidation (M))|F}V]DV{I|L}{I|L}RC{M(Oxidation (M))|F} 5.3069 + + 1170 + NaN NaN 155496.6 NaN 16033 3978 20004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20015 82.344 NaN 1295000 35 0 55850 0.326 + 23888 RSSKQLVDI 9 113 523.3037994738958 1044.5930460145914 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20014 1237134.75 0.5584729617590388 -17 0.4718475341796875 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.723162845929126 0.3000504726104499 2 V 1 8 7.2185 0 0 0.69103 0 0 718.3989878350211 224.09775720767814 942.4967450426992 0 0 0 0 0 0.5 0 0 0 + V 0.69103 + + 95 + NaN NaN 290283.9 NaN 16034 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20016 82.348 NaN 885440 35 0 77241 0.261 + 28903 TWFTAGAKLLF 11 86 627.8475655601902 1253.6805781871803 2 627.8477172851562 MULTI HCD FTMS 0 0 0 20014 542903.8125 0.3966159397175766 11 -0.3011016845703125 2 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 124.953037156858 0.013497877353096458 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 97.446 0 0 7.7728 7.7728 90.863 0 0 0 2.2969624387961574 75.01471284755077 2.2969624387961574 9.164539485499247 0 3.1989700043360187 0 1.9361818737241734 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}[QA]TK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]{I|L}{I|L}K{M(Oxidation (M))|F};{I|L}{I|L}K[HV]GAAAD{I|L}{M(Oxidation (M))|F};{I|L}{I|L}K[HV]QAAD{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}T[{I|L}V]{[NV]|[RG]}K{M(Oxidation (M))|F} 7.7728;7.0418;6.2386;5.4872;5.4353;5.0111;4.7562;3.9161;3.11;3.0316 -;+;+;-;-;-;-;-;-;- + 2393 NaN NaN 228123.7 NaN 16035 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20017 82.351 NaN 1025000 35 0 79072 0.261 + 34605 YPNSWFRF 8 83 558.7666293160219 1115.5187056988436 2 558.766845703125 MULTI HCD FTMS 0 0 0 20014 604582 0.770438481081698 -3 0.07848358154296875 3 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 38.15118350030904 0.25467990583502337 2 {I|L}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 8 -1 69.334 0 0 6.2154 0 0 147.05942943106862 0 147.05942943106862 0 37.245462655597095 0 0 0 2.1861818737241734 0 1.6237125054200234 0 {I|L}{I|L}E{I|L}D[YG]{M(Oxidation (M))|F} 6.2154 - 1579 + NaN NaN 270330.9 NaN 16036 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20018 82.355 NaN 381610 35 0 37767 0.261 + 13595 KYPENFFLL 9 70 585.8131605635726 1169.6117681939452 2 585.8135986328125 MULTI HCD FTMS 0 0 0 20014 236187.0625 0.0012006038936303875 254 -6.026176452636719 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 55.523 0 0 4.7471 4.7471 86.553 0 0 0 1.7120467177745269 34.0963026929962 1.7120467177745269 9.208187539523749 0 1.881810887670697 0 0 0.6861818737241735 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{[TV]|[{I|L}S]}EV{[RE]|[WV]}K;[{M(Oxidation (M))|F}V][YT]EV{[RE]|[WV]}K 4.7471;3.9598;2.0316;0.64728;0.54045 +;-;-;-;- + 424 NaN NaN 159491 NaN 16037 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20019 82.358 NaN 256150 35 0 28433 0.261 + 23491 RMCGLMSLI 9 60 512.2615978553689 1022.5086427775378 2 512.2617797851562 MULTI HCD FTMS 0 0 0 20014 136825.125 0.7571335920918831 2 -0.0423126220703125 5 Unmodified _RMCGLMSLI_ REV__nc|ENSG00000171931|Q5XX13-2|FBXW10 13.90604991867851 0.24021115267848145 2 DAVN{I|L}PE 7 -1 41.697 0 0 4.0779 0 0 266.1605396955094 0 266.1605396955094 0 15.727890363592664 0 0 0 1.5189301784845295 0 0 0 DAVN{I|L}PE 4.0779 - 266 NaN NaN 138225.1 NaN 16038 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20020 82.361 NaN 169760 35 0 23848 0.261 + 20534 PDTVSVLLI 9 48 478.7869667628844 955.5593805925688 2 479.2774353027344 MULTI HCD FTMS 0 0 0 20014 39725.61328125 1 0 0 6 Unmodified _PDTVSVLLI_ REV__nc|ENSG00000168078|Q96KB5-2|PBK 10.823927491677226 0.26684000660059787 2 PT{M(Oxidation (M))|F} 3 -1 24.213 0 0 2.5339 0 0 592.380164139247 0 592.380164139247 0 10.713337517843655 0 0 0 0 0 0.7302046884880937 0 PT{M(Oxidation (M))|F} 2.5339 - 33 + NaN NaN 116619.5 NaN 16039 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20021 82.365 NaN 127050 35 0 20053 0.261 -1 CYVPTCSEDSS 11 43 624.233457693317 1246.4523624534338 2 624.2333374023438 MULTI HCD FTMS 0 0 0 20014 51572.65625 1 0 0 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))YVPTCSEDSS_ ENSG00000215455|ENST00000400375|KRTAP10-1 2.735195868890462 0.4069250265843076 2 DSS 3 -1 15.662 0 0 1.2565 0 0 939.3463213487153 0 939.3463213487153 0 8.672137691284407 0 0 0 0 0 0 0 DSS 1.2565 + + 7 NaN NaN 108191.4 NaN 16040 3979 20014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20023 82.37 NaN 7336600 35 0 876140 0.327 + 17907 MILELDPTF 9 95 547.7754196984221 1093.536286463644 2 547.7759399414062 MULTI HCD FTMS 0 0 0 20022 4917766 0.8203307584875871 -2 0.05890655517578125 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 112.34 0 0 10.273 10.273 95.371 0 0 0 21.967765232591418 36.38185672500266 21.967765232591418 10.318533389340374 0 3.0228787452803374 2 1.6527084789088669 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}AE{I|L}YP;{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}D[{M(Oxidation (M))|F}T]P;{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA{I|L}E{I|L}YP 10.273;9.3294;7.473;7.2035;6.7684;6.5294;6.3795;6.2599;6.1604;5.9952 +;-;-;-;-;-;-;-;-;- + 2860 NaN NaN 770995.3 NaN 16041 3980 20022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20024 82.374 NaN 876780 35 0 48159 0.261 + 23662 RQAAWTSQW 9 106 567.2786394420932 1132.5427259509863 2 567.7662963867188 MULTI HCD FTMS 0 0 0 20022 10320.978515625 0.3049057813075737 10 -0.27497100830078125 2 Unmodified _RQAAWTSQW_ ENST00000376572.7_1_1:11982976-11983018:-|nuORF 24.020572477871973 0.15282392193088168 2 QST{M(Oxidation (M))|F}VYW 7 7 47.003 0 0 4.1502 0 0 203.1142811919363 0 203.1142811919363 0 26.363203766078495 0 0 0 0.28872548999643577 0 1.0451140161145327 0 QST{M(Oxidation (M))|F}VYW 4.1502 - 4759 + NaN NaN 217202.4 NaN 16042 3980 20022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20025 82.378 NaN 429940 35 0 56517 0.261 + -1 SWGPFGPCF 9 68 527.725692996901 1053.4368330606019 2 527.7257690429688 MULTI HCD FTMS 0 0 0 20022 85940.3515625 0.6564736990450832 4 -0.09474945068359375 3 Carbamidomethyl (C) _SWGPFGPC(Carbamidomethyl (C))F_ REV__ENST00000252050.8_2_6:43190351-43192035:+|nuORF 4.75600775471527 0.31496297302216103 2 VYD{M(Oxidation (M))|F}VV{M(Oxidation (M))|F} 7 -1 43.479 0 0 4.1273 0 0 166.02979725127972 0 166.02979725127972 0 23.21796966806488 0 0 0 0 0 0.7059771852360797 0 VYD{M(Oxidation (M))|F}VV{M(Oxidation (M))|F} 4.1273 - 339 + NaN NaN 146150.1 NaN 16043 3980 20022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20026 82.381 NaN 66804 35 0 8292.4 0.261 -1 0 40 495.1262238231897 494.11894735658973 1 495.12567138671875 MULTI HCD FTMS 0 0 0 20022 17772.931640625 0.39798462720943517 8 -0.212677001953125 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95320.4 NaN 16044 3980 20022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20028 82.386 NaN 1335900 35 0 187850 0.327 + 32204 VYTFQFQDF 9 91 597.7773071270942 1193.5400613209883 2 597.7771606445312 MULTI HCD FTMS 0 0 0 20027 674257.5 0.6486365196336026 2 -0.05901336669921875 1 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 195.45211591753656 1.8365487807996522E-14 2 [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 0 + 107.45 0 0 9.0025 9.0025 93.384 0 0 0 10.774509799928708 10.774509799928708 10.774509799928708 9.208187539523749 0 2.6989700043360187 1.0457574905606752 2.0994850021680094 0.7614393726401688 + + [YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YT]V{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YT]V{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YT]V{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[CA]|SS}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}TP{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F} 9.0025;8.231;7.912;7.7421;6.9706;6.8252;6.7194;6.6516;6.3297;5.9479 +;-;-;-;-;-;-;-;-;- + 2017 NaN NaN 308995 NaN 16045 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20029 82.39 NaN 1270100 35 0 139550 0.261 + 15167 LMSLIINTF 9 102 534.2939490319458 1066.5733451306915 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20027 643654.8125 0.19875578619268253 -9 0.22885894775390625 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 176.83740622441886 1.0594397382223596E-10 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 95.171 0 0 8.9231 8.9231 94.431 0 0 0 5.6424927368725974 33.81352082390574 5.6424927368725974 10.999383063307462 0 2.894599018282542 0 1.7856668758921828 0.6307196863200843 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}TQV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}KS{M(Oxidation (M))|F}{I|L} 8.9231;7.8918;7.4684;6.4371;5.8131;5.6552;5.6414;4.7818;4.7751;4.6239 +;-;-;-;-;-;-;-;-;- + 1935 NaN NaN 283455.7 NaN 16046 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20030 82.394 NaN 580930 35 0 32492 0.261 -1 0 90 531.8170833266972 1061.6196137201944 2 531.8171997070312 MULTI HCD FTMS 0 0 0 20027 558206.75 0.4478747618663162 -15 0.40265655517578125 3 NaN NaN 2 A 1 -1 6.2371 0 0 0.58751 0 0 105.07932439333668 882.4904879205686 987.5698123139053 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.58751 - 44 + NaN NaN 179417 NaN 16047 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20031 82.397 NaN 614820 35 0 135520 0.261 + 22924 QYSPLLAAF 9 60 505.2713289766905 1008.528105020181 2 505.2712097167969 MULTI HCD FTMS 0 0 0 20027 186915.359375 0.20653533878432062 -5 0.12079620361328125 4 Unmodified _QYSPLLAAF_ ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1 56.17704186161178 0.022929533404884107 2 {I|L}AA{M(Oxidation (M))|F} 4 5 51.186 0 0 5.0753 0 0 588.2910023419937 0 588.2910023419937 0 41.721675119240516 0 0 0 1.9247425010840047 0 0 0 + {I|L}AA{M(Oxidation (M))|F} 5.0753 + + 68 NaN NaN 189871.5 NaN 16048 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20032 82.401 NaN 191140 35 0 18715 0.261 + 8168 GPPPRATR 8 67 426.24596776695273 850.4773826007055 2 426.2462158203125 MULTI HCD FTMS 0 0 0 20027 119014.53125 0.07147361500558469 -8 0.19934844970703125 5 Unmodified _GPPPRATR_ ENSG00000047648|ENST00000337414|ARHGAP6;ENST00000489330.6_1_X:11166772-11683098:-|nuORF;nc|ENSG00000047648|O43182-2|ARHGAP6;nc|ENSG00000047648|O43182-3|ARHGAP6 2.302733041254933 0.5385759549224092 2 Q 1 8 10.119 0 0 1.1898 0 0 220.1322187678565 499.27646814517817 719.4086869130347 0 0 0 0 0 0.6139829889124311 0 0 0 Q 1.1898 - 30 + NaN NaN 126039.3 NaN 16049 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20033 82.404 NaN 125720 35 0 18306 0.261 + 30253 VKCGYFYLEF 10 42 634.8056534147986 1267.596753896397 2 634.8062133789062 MULTI HCD FTMS 0 0 0 20027 53919.9765625 0.8380091446019784 -5 0.12079620361328125 6 Unmodified _VKCGYFYLEF_ ENSG00000253719|ENST00000519948|ATXN7L3B 8.745405648335112 0.42901288225909884 2 {I|L}E{M(Oxidation (M))|F} 3 7 30.445 0 0 2.4018 0 0 860.3903675763687 0 860.3903675763687 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 + {I|L}E{M(Oxidation (M))|F} 2.4018 + + 6 NaN NaN 106055.8 NaN 16050 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20034 82.407 NaN 165260 35 0 26087 0.261 + 20113 NYIPRFWTF 9 58 622.3168269168109 NaN 0 622.3165283203125 PEAK HCD FTMS 0 0 0 20027 49894.3203125 0.7292118370198659 22 -0.625579833984375 7 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 26.268140514670165 0.145325121643443 2 {I|L} 1 8 16.99 0 0 1.3672 0 0 852.4287760486624 274.0823153131469 1126.5110913618093 0 0 0 0 0 1 0 0 0 + {I|L} 1.3672 + + 15 + NaN NaN 132518.6 NaN 16051 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20035 82.411 NaN 168610 35 0 24367 0.264 + 14105 LAAAGRRGP 9 64 434.7592026191575 867.5038523051151 2 434.7588806152344 MULTI HCD FTMS 0 0 0 20027 73025.984375 0.06735981949841018 -6 0.1502838134765625 8 Unmodified _LAAAGRRGP_ REV__ENSG00000170275|ENST00000320954|CRTAP 4.3292370932331545 0.3181982124262546 2 A 1 -1 5.3615 0 0 0.61804 0 0 149.10707603734005 644.3505343072874 793.4576103446275 0 0 0 0 0 0.28872548999643577 0 0 0 A 0.61804 + + 9 + NaN NaN 134259 NaN 16052 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20036 82.414 NaN 179250 35 0 13445 0.261 + 33344 YGAFLVTNF 9 66 516.2630745592927 1030.5115961853853 2 516.26318359375 MULTI HCD FTMS 0 0 0 20027 25407.951171875 0.13272970189811173 -6 0.1502838134765625 9 Unmodified _YGAFLVTNF_ ENST00000306399.3_1_3:185686359-185697623:+|nuORF;ENST00000416764.5_1_3:185686359-185693154:+|nuORF 15.847184025352803 0.2234401846867398 2 {I|L}E{I|L}T{I|L}N 6 7 27.969 0 0 2.7141 0 0 329.134569236525 0 329.134569236525 0 5.979269022250122 0 0 0 0 0 0 0 {I|L}E{I|L}T{I|L}N 2.7141 - 210 NaN NaN 119793.2 NaN 16053 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20037 82.417 NaN 70968 35 0 10016 0.261 + 24466 RYLDLILNDF 10 41 641.345264048877 1280.6759751645538 2 641.163818359375 MULTI HCD FTMS 0 0 0 20027 8165.52685546875 0.01526631952218241 -8 0.19934844970703125 10 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 12.174745833636585 0.39723355204102767 2 {I|L}{I|L}ND{M(Oxidation (M))|F} 5 5 42.959 0 0 3.3544 0 0 660.360643455275 0 660.360643455275 0 42.870156338638594 0 0 0 0.5 0 0 0 + {I|L}{I|L}ND{M(Oxidation (M))|F} 3.3544 + + 15 NaN NaN 102610.1 NaN 16054 3981 20027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20039 82.422 NaN 596680 35 0 118700 0.327 + 19896 NYFDEQFEF 9 59 619.7538586853301 1237.49316443746 2 619.7537231445312 MULTI HCD FTMS 0 0 0 20038 455860.09375 0.9619807982670591 1 -0.02276611328125 1 Unmodified _NYFDEQFEF_ ENSG00000162639|ENST00000651461|HENMT1 121.34585337138759 0.001129813327125052 2 DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6 3 84.998 0 0 6.8686 0 0 424.17521291733556 0 424.17521291733556 0 65.04677245306908 0 0 0 2.274227503252014 0 1.031234684152075 1.2302046884880937 + DEQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 6.8686 + + 765 NaN NaN 191189.1 NaN 16055 3982 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20040 82.426 NaN 1095400 35 0 168460 0.261 + 35352 YYALEVSYF 9 87 577.773813394787 1153.533073856374 2 577.7740478515625 MULTI HCD FTMS 0 0 0 20038 499879.78125 0.09715403000974009 12 -0.33679962158203125 2 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 71.13359017698441 0.008721403657255008 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F} 9 2 + 66.168 0 0 5.7361 5.7361 89.104 0 0 0 6.341145789210586 53.53363519713283 6.341145789210586 10 0 2.4291746928241125 0 0.3494850021680094 0 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};YYA{I|L}EVSY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{I|L}[MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}V][MT]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}A{[{M(Oxidation (M))|F}H]|[RQ]}[HV]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}A{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}[HV]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}RGEH{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}RP[EP]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.7361;4.8692;1.7503;1.5922;0.96798;0.85582;0.44949;0.20686 -;+;-;-;-;-;-;- + 1517 NaN NaN 265983.3 NaN 16056 3982 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20041 82.43 NaN 878100 35 0 53184 0.261 -1 0 116 545.317042992181 1088.6195330511619 2 545.3173828125 MULTI HCD FTMS 0 0 0 20038 400826.6875 0.44491133930847143 -10 0.265106201171875 3 NaN NaN 2 {I|L}{I|L}{I|L}SKN 6 -1 24.634 0 0 2.2629 0 0 402.1514261930502 0 402.1514261930502 0 10.988897423716109 0 0 0 0 0 0.3054621874040891 0 {I|L}{I|L}{I|L}SKN 2.2629 - 878 NaN NaN 228324.6 NaN 16057 3982 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20042 82.433 NaN 583070 35 0 33605 0.261 + 35639 YYIFIPSKF 9 93 589.3158816571874 1176.6172103811748 2 589.817138671875 MULTI HCD FTMS 0 0 0 20038 239692.375 1 0 0 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19398022840297344 2 YYNA{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 8 6 60.756 0 0 5.1636 0 0 0 127.07100062256326 127.07100062256326 29.029258746069786 0 0 0 0 0.3807196863200844 2 0 0.9604093769761877 YYNA{M(Oxidation (M))|F}{M(Oxidation (M))|F}K{I|L} 5.1636 - 1852 NaN NaN 179679.1 NaN 16058 3982 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20043 82.437 NaN 318740 35 0 17078 0.261 -1 0 97 553.8298454346881 1105.645137936176 2 553.8298950195312 MULTI HCD FTMS 0 0 0 20038 198537.640625 0.4970399963886939 -14 0.38651275634765625 5 NaN NaN 2 N 1 -1 3.9794 0 0 0.35992 0 0 425.3274021957448 563.2351778619749 988.5625800577197 0 0 0 0 0 0 0 0 0 N 0.35992 - 129 + NaN NaN 141062.4 NaN 16059 3982 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20044 82.44 NaN 353240 35 0 55459 0.261 + 17248 LYPFLGIRF 9 64 563.3264645250837 1124.6383761169673 2 563.3265380859375 MULTI HCD FTMS 0 0 0 20038 129095.1015625 0.8692596009990805 -2 0.05242919921875 6 Unmodified _LYPFLGIRF_ ENSG00000137806|ENST00000260361|NDUFAF1 48.345845343767074 0.03388484103555672 2 [Y{I|L}]P{M(Oxidation (M))|F}{I|L}{[VA]|[{I|L}G]}R{M(Oxidation (M))|F} 9 0 + 57.162 0 0 5.0827 5.0827 91.84 0 0 0 43.177959224778135 13.46787486224656 13.46787486224656 57.16244375758329 0 1.6861818737241734 2 0 0 + + [Y{I|L}]P{M(Oxidation (M))|F}{I|L}{[VA]|[{I|L}G]}R{M(Oxidation (M))|F} 5.0827 + + 83 + NaN NaN 140385 NaN 16060 3982 20038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20046 82.445 NaN 1203000 35 0 233480 0.326 + 18362 MPLNVADLI 9 99 501.2706430734108 1000.5267332136216 2 501.2707824707031 MULTI HCD FTMS 0 0 0 20045 846239.9375 0.6048694895912964 6 -0.1669464111328125 1 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 62.57269311338072 0.013982455292112035 2 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 58.579 0 0 5.8548 5.8548 90.835 0 0 0 6.896512253176823 41.18440000316717 6.896512253176823 16.923487412610356 0 1.1549471895720984 1 0.566901560044258 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}A{[CP]|[EA]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}AV{[CP]|[EA]}AD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}A{[NV]|[RG]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[{I|L}P]{[DS]|[MA]|[CV]|TT};{[TV]|[{I|L}S]}A{M(Oxidation (M))|F}[KP][EP]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]EV[KS] 5.8548;4.1634;3.9861;3.071;2.4246;1.1908;0.36336;0.13374 -;-;-;-;-;-;-;- 609 NaN NaN 273842.8 NaN 16061 3983 20045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20047 82.449 NaN 674100 35 0 101600 0.261 -1 MFDLNSCLF 9 82 573.7515771049025 1145.4886012766049 2 574.2314453125 MULTI HCD FTMS 0 0 0 20045 61498.22265625 1 0 0 2 Carbamidomethyl (C) _MFDLNSC(Carbamidomethyl (C))LF_ ENST00000478546.1_1_13:22255254-22275571:+|nuORF 9.38312468134398 0.279288223203164 2 {I|L}KA[CS]D[TP]{M(Oxidation (M))|F} 9 -1 22.73 0 0 1.9843 0 0 165.01712722921008 0 165.01712722921008 0 13.266354862938513 0 0 0 0 0 0 0.28872548999643577 {I|L}KA[CS]D[TP]{M(Oxidation (M))|F} 1.9843 - 548 + NaN NaN 194723.1 NaN 16062 3983 20045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20048 82.453 NaN 165740 35 0 79720 0.263 -1 0 33 449.1488728665449 448.1415963999449 1 449.14886474609375 MULTI HCD FTMS 0 0 0 20045 120721.0234375 0.651472353757498 -4 0.10132598876953125 3 NaN NaN 2 W 1 -1 0.3786 0 0 0.084483 0 0 101.45911456576364 157.57171045474846 259.0308250205121 0 0 0 0 0 0 0 0 0 W 0.084483 - 1 + NaN NaN 110461.1 NaN 16063 3983 20045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20049 82.456 NaN 75575 35 0 12605 0.261 + 32425 WARGCLCP 8 38 453.2097327756132 NaN 0 453.20916748046875 PEAK HCD FTMS 0 0 0 20045 22159.4453125 0.5637712527860267 12 -0.34680938720703125 4 Unmodified _WARGCLCP_ ENST00000493076.5_1_22:35819109-35819445:+|nuORF 0.7936320650641473 0.38822285293237185 2 D 1 8 3.9794 0 0 0.44 0 0 97.9936099830639 688.3501680963499 786.3437780794138 0 0 0 0 0 0 0 0 0 D 0.44 - 1 + NaN NaN 113667.2 NaN 16064 3983 20045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20050 82.46 NaN 83573 35 0 5995 0.261 -1 0 55 437.2368288074376 872.4591046816752 2 437.2369384765625 MULTI HCD FTMS 0 0 0 20045 51058.046875 0.280022859673517 -4 0.10132598876953125 5 NaN NaN 2 Q[{M(Oxidation (M))|F}V] 3 -1 8.2218 0 0 0.94237 0 0 480.2534657209 0 480.2534657209 0 3.617690979133778 0 0 0 0.5 0 0 0 Q[{M(Oxidation (M))|F}V] 0.94237 - 24 NaN NaN 98440.5 NaN 16065 3983 20045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20052 82.464 NaN 1223100 35 0 244900 0.327 + 31455 VYDPLFSQL 9 81 541.2822145297783 1080.5498761263566 2 541.2823486328125 MULTI HCD FTMS 0 0 0 20051 510292.15625 0.6861461362129594 2 -0.065582275390625 1 Unmodified _VYDPLFSQL_ ENSG00000100104|ENST00000215917|SRRD 93.16586880292088 0.00444300900000894 2 [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L} 9 0 + 83.775 0 0 7.753 7.753 94.952 0 0 0 61.428352599384866 15.686814654273675 15.686814654273675 25.212958256731625 0 2.5994850021680094 1.5228787452803376 1.3684151806525389 0.805462187404089 + + [YV]DP{I|L}{M(Oxidation (M))|F}SQ{I|L};[YV]DP{I|L}{M(Oxidation (M))|F}S[AG]{I|L};[YV]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[NV]|[RG]}SQ{I|L};[YV]{[NV]|[RG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}SQ{I|L};[VP]DY{I|L}{M(Oxidation (M))|F}SQ{I|L};{[QS]|[NT]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L};[VP]DY{I|L}{M(Oxidation (M))|F}S[AG]{I|L};[YV]D{[QD]|[EN]|[WG]|[KD]|[RS]}VVP{M(Oxidation (M))|F};[YV]DP{I|L}{[NV]|[RG]}[YV];[Q{I|L}]S{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[KC]M{I|L} 7.753;5.4196;3.7584;3.6016;3.3911;2.9605;2.5389;2.4896;2.2936;1.9112 +;-;-;-;-;-;-;-;-;- + 346 + NaN NaN 280900.3 NaN 16066 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20053 82.469 NaN 1421600 35 0 170170 0.261 + 15348 LPDDLGQLTAL 11 88 578.3162048858285 1154.6178568384569 2 578.31640625 MULTI HCD FTMS 0 0 0 20051 396758.3125 0.9337878417574613 2 -0.065582275390625 2 Unmodified _LPDDLGQLTAL_ ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-2|LRSAM1 42.835182525472874 0.11869059338859039 2 {M(Oxidation (M))|F}{I|L}EV{I|L}TA{I|L} 8 6 58.613 0 0 5.0764 0 0 250.09512342091205 0 250.09512342091205 0 20.600417255917748 0 0 0 1.274227503252014 0 0.8807196863200843 0 {M(Oxidation (M))|F}{I|L}EV{I|L}TA{I|L} 5.0764 - 1664 NaN NaN 316759.5 NaN 16067 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20054 82.472 NaN 602380 35 0 149480 0.261 -1 LYLPKCCLL 9 75 590.3156678044901 1178.61678267578 2 590.8165283203125 MULTI HCD FTMS 0 0 0 20051 282975.25 1 0 0 3 2 Carbamidomethyl (C) _LYLPKC(Carbamidomethyl (C))C(Carbamidomethyl (C))LL_ ENST00000327569.7_1_X:138820151-138823186:-|nuORF 23.1484247019978 0.1603590852062899 2 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L} 11 -1 + 51.959 0 0 4.4085 4.4085 86.957 0 0 0 16.24562729642608 15.07062321345802 15.07062321345802 9.58607314841774 0 0.3807196863200844 1.154901959985743 0.6382104921644451 0 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L};[Y{I|L}]E[KQ]E[SG]{I|L}{I|L};[Y{I|L}]{I|L}T[NG]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E{[C(Carbamidomethyl (C))E]|[WC]}K{I|L}{I|L};[Y{I|L}]E[KQ]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}T{[WN]|[YH]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};{[QN]|[E{I|L}]|[KN]}Y{I|L}[C(Carbamidomethyl (C))Q]K{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y[KQ]E[SG]{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y[KQ]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y[KQ]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L} 4.4085;3.5952;3.5275;3.0301;2.7179;2.6768;2.4914;2.2105;1.4113;1.3332 -;-;-;-;-;-;-;-;-;- 411 NaN NaN 181585.7 NaN 16068 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20055 82.476 NaN 286140 35 0 36969 0.261 + 6476 FPIPEEYTF 9 66 571.7741958671687 1141.5338388011373 2 571.773681640625 MULTI HCD FTMS 0 0 0 20051 129629.7265625 0.2526094770650772 13 -0.3830108642578125 4 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 54.773552608820026 0.024892918755467567 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F} 9 0 + 47.814 0 0 4.1886 4.1886 87.897 0 0 0 0.273605763488014 33.90092514408778 0.273605763488014 14.649089550539529 0 1.8494850021680094 0 0.4247425010840047 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]EYT{M(Oxidation (M))|F};[YV]{I|L}{[CA]|SS}YYT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[YD]|[{M(Oxidation (M))|F}M]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[EP]E[{I|L}P][NS];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[YQ]HH[NS] 4.1886;2.9053;1.0105;0.337;0.18382 +;-;-;-;- + 196 NaN NaN 134547.1 NaN 16069 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20056 82.479 NaN 266730 35 0 50932 0.261 -1 MILNLLIF 8 76 509.80379454164563 1017.5930361500913 2 509.8037109375 MULTI HCD FTMS 0 0 0 20051 171535.203125 0.1355755641606636 57 -1.6193618774414062 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MILNLLIF_ ENST00000476203.2_1_1:78272729-78272759:+|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 19.922 0 0 1.9577 0 0 626.3454603217695 0 626.3454603217695 0 8.952424927286845 0 0 0 0 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 1.9577 + + 75 + NaN NaN 126498.8 NaN 16070 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20057 82.482 NaN 316670 35 0 27823 0.261 + 21658 PYSEYFEYF 9 60 622.7612129118122 1243.5078728904243 2 622.7609252929688 MULTI HCD FTMS 0 0 0 20051 72824.5859375 0.5828796755824953 -3 0.0785675048828125 6 Unmodified _PYSEYFEYF_ ENSG00000171720|ENST00000305264|HDAC3;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENST00000491581.5_1_5:141004689-141007494:-|nuORF;nc|ENSG00000171720|O15379-2|HDAC3 41.8396318013385 0.056899836730939755 2 [YN][QA]Y{M(Oxidation (M))|F}EY 8 4 59.614 0 0 4.794 0 0 0 162.05833623004597 162.05833623004597 41.91122510072759 0 0 0 0 2.1989700043360187 1.6989700043360187 0 0 [YN][QA]Y{M(Oxidation (M))|F}EY 4.794 - 196 NaN NaN 139331.7 NaN 16071 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20058 82.486 NaN 131730 35 0 12912 0.261 + 27932 TENDIYNFF 9 46 581.7557496476726 1161.496946362145 2 581.7568359375 MULTI HCD FTMS 0 0 0 20051 59107.1796875 0.05247212535009071 12 -0.35007476806640625 7 Unmodified _TENDIYNFF_ ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF 12.240655878213236 0.2545997876781172 2 N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.1165 0 0 735.3075372097659 0 735.3075372097659 0 24.119543704721593 0 0 0 1 0 0 0 + N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1165 + + 44 NaN NaN 108699.3 NaN 16072 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20059 82.489 NaN 159900 35 0 22762 0.261 + -1 TPGGWGPECSC 11 48 604.2294374802436 1206.4443220272872 2 604.2286376953125 MULTI HCD FTMS 0 0 0 20051 24545.46484375 0.03978067534703353 14 -0.40261077880859375 8 2 Carbamidomethyl (C) _TPGGWGPEC(Carbamidomethyl (C))SC(Carbamidomethyl (C))_ REV__ENSG00000168477|ENST00000644971|TNXB;REV__nc|ENSG00000168477|P22105-1|TNXB;REV__nc|ENSG00000168477|P22105-4|TNXB 1.1933415558491238 0.4136870758253112 2 C{M(Oxidation (M))|F} 2 -1 5.5732 0 0 0.46195 0 0 61.01647583787196 892.3070786951643 953.3235545330363 0 0 0 0 0 0 0 0 0 C{M(Oxidation (M))|F} 0.46195 - 19 + NaN NaN 111988.2 NaN 16073 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20060 82.492 NaN 101730 35 0 6462.4 0.261 -1 YVINTCGQDF 10 46 608.7681274414062 NaN 0 608.7681274414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _YVINTC(Carbamidomethyl (C))GQDF_ ENSG00000111846|ENST00000495262|GCNT2;ENST00000459872.1_1_6:10557103-10619499:+|nuORF;ENST00000474983.5_1_6:10529144-10530083:+|nuORF;GCNT2|p.P196S|1|0.53|ENSG00000111846|chr6:10529497-10529497|C/T|missense_variant;nc|ENSG00000111846|Q8N0V5-2|GCNT2;nc|ENSG00000111846|Q8N0V5-3|GCNT2 9.38312468134398 0.33215363477037435 2 VEW 3 -1 10.802 0 0 0.88867 0 0 129.985067093199 668.3261812799436 798.3112483731427 0 0 0 0 0 0 0 0 0 VEW 0.88867 - 11 + NaN NaN 113082.4 NaN 16074 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20061 82.496 NaN 253640 35 0 41916 0.261 + 24467 RYLDLILNDF 10 63 641.345264048877 1280.6759751645538 2 641.3453979492188 MULTI HCD FTMS 0 0 0 20051 137184.109375 0.25648025952938275 -5 0.120880126953125 10 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 38.558800761779466 0.1579133335467903 2 D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F} 7 3 67.823 0 0 5.2959 0 0 432.24778945136876 0 432.24778945136876 0 55.51615737469504 0 0 0 2.274227503252014 0 0 0 + D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F} 5.2959 + + 80 NaN NaN 122323.3 NaN 16075 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20062 82.499 NaN 85548 35 0 9844.4 0.264 -1 0 41 467.10194807159957 NaN 0 466.77734375 PEAK HCD FTMS 0 0 0 20051 40106.078125 0.693859293258246 -6 0.153656005859375 11 NaN NaN 2 P 1 -1 5.4846 0 0 0.58835 0 0 102.7760264148804 729.3358858697874 832.1119122846678 0 0 0 0 0 0 0 0 0 P 0.58835 - 1 + NaN NaN 105516.7 NaN 16076 3984 20051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20064 82.504 NaN 1468100 35 0 67008 0.327 + 23889 RSSKQLVDI 9 118 523.3037994738958 1044.5930460145914 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20063 1587725.25 0.7167381102398994 -11 0.287811279296875 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 2 Q 1 8 9.2917 0 0 0.88951 0 0 546.3256417216501 367.1974035135685 913.5230452352185 0 0 0 0 0 0.3807196863200844 0 0 0 + Q 0.88951 + + 89 + NaN NaN 313102.4 NaN 16077 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20065 82.508 NaN 1000000 35 0 72069 0.261 + 34606 YPNSWFRF 8 92 558.7666293160219 1115.5187056988436 2 558.7669677734375 MULTI HCD FTMS 0 0 0 20063 546850.125 0.6968688774795424 3 -0.07848358154296875 2 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 24.67388899826682 0.4122521268485776 2 {I|L}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 8 -1 77.676 0 0 6.9633 0 0 147.04136302481862 0 147.04136302481862 0 41.787019598111144 0 0 0 2.610924374808178 0 1.1237125054200234 0 {I|L}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 6.9633 - 1690 + NaN NaN 246565.3 NaN 16078 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20066 82.512 NaN 394010 35 0 35315 0.261 + 28904 TWFTAGAKLLF 11 69 627.8475655601902 1253.6805781871803 2 627.8479614257812 MULTI HCD FTMS 0 0 0 20063 306139.78125 0.22364904100835004 17 -0.47798919677734375 3 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 97.74103586103693 0.0169003698383019 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 92.689 0 0 7.3933 7.3933 90.316 0 0 0 3.177418734074564 85.69898178624769 3.177418734074564 9.164539485499262 0 2.774227503252014 0 1.8851518780601921 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}T[{I|L}V]{[QV]|[N{I|L}]|[RA]|[KV]}N{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}T[{I|L}V]{[NV]|[RG]}K{M(Oxidation (M))|F} 7.3933;6.6623;5.1779;4.4469;2.7228;2.4822 -;+;-;-;-;- + 352 NaN NaN 160227 NaN 16079 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20067 82.515 NaN 386210 35 0 41892 0.261 + 13596 KYPENFFLL 9 63 585.8131605635726 1169.6117681939452 2 585.8132934570312 MULTI HCD FTMS 0 0 0 20063 241022.75 0.0012251850251260206 260 -6.139678955078125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 34.93206674587334 0.08860942999206235 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 46.934 0 0 4.0128 4.0128 85.622 0 0 0 2.8656123832573854 28.974856131339166 2.8656123832573854 9.208187539523749 0 1.579689690656103 0 0 0.3054621874040891 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 4.0128;3.2255;2.0427;1.5279 +;-;-;- + 144 NaN NaN 147335.6 NaN 16080 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20068 82.518 NaN 328440 35 0 56105 0.261 + 17748 MEAPAQLLF 9 73 510.2649952470772 1018.5154375609544 2 510.26519775390625 MULTI HCD FTMS 0 0 0 20063 119359.359375 0.5891725814670608 1 -0.0261383056640625 5 Unmodified _MEAPAQLLF_ nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7;nc|ENSG00000244437|P01624|IGKV3-15 22.736283301280096 0.1639198954644489 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 6 41.198 0 0 4.0449 0 0 627.268674503319 0 627.268674503319 0 30.228787452803374 0 0 0 1.5 0 0 0 + {I|L}{I|L}{M(Oxidation (M))|F} 4.0449 + + 110 + NaN NaN 144148.1 NaN 16081 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20069 82.522 NaN 486600 35 0 41701 0.261 + 34889 YSFLDYVM 8 77 527.233662982494 1052.452773031788 2 527.2337036132812 MULTI HCD FTMS 0 0 0 20063 110406.46875 0.642250997118602 -2 0.05899810791015625 6 Oxidation (M) _YSFLDYVM(Oxidation (M))_ ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF 81.86404211737425 0.01600015972391505 2 DYV{M(Oxidation (M))|F} 4 4 60.494 0 0 5.748 0 0 510.2472248235753 0 510.2472248235753 0 45.020001392857324 0 0 0 2 0 1.0941876774005248 0 + DYV{M(Oxidation (M))|F} 5.748 + + 373 NaN NaN 169916.4 NaN 16082 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20070 82.525 NaN 196530 35 0 37642 0.261 -1 0 55 467.10194807159957 NaN 0 467.1017761230469 PEAK HCD FTMS 0 0 0 20063 29490.828125 0.5102090784503229 -5 0.13419342041015625 7 NaN NaN 2 T{I|L}E{I|L} 4 -1 22.467 0 0 2.4101 0 0 163.71431987191164 309.1938875787719 472.90820745068356 0 0 0 0 0 0 0 0.805462187404089 0 T{I|L}E{I|L} 2.4101 - 45 + NaN NaN 136128.7 NaN 16083 3985 20063 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20072 82.53 NaN 6516600 35 0 737590 0.327 + 17908 MILELDPTF 9 100 547.7754196984221 1093.536286463644 2 547.7760009765625 MULTI HCD FTMS 0 0 0 20071 4747052.5 0.7918541016195965 4 -0.1146392822265625 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 205.81641810085733 1.0367089511146742E-17 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 109.68 0 0 10.03 10.03 96.446 0 0 0 21.254675911389555 47.26158414573064 21.254675911389555 15.638181262758266 0 2.947621246364342 2 1.6382104921644451 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}ED{I|L}PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}ED{I|L}[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F}AE{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EDVVYP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{I|L}E{I|L}{[QN]|[E{I|L}]|[KN]} 10.03;8.5999;7.382;7.1214;6.6642;5.6914;5.4148;5.3827;5.2342;5.1765 +;-;-;-;-;-;-;-;-;- + 2207 NaN NaN 742979.3 NaN 16084 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20073 82.534 NaN 3518100 35 0 405450 0.261 + 15168 LMSLIINTF 9 109 534.2939490319458 1066.5733451306915 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20071 2837309 0.8761397724600619 -4 0.10790252685546875 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 176.83740622441886 1.0594397382223596E-10 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 90.847 0 0 8.5176 8.5176 90.472 0 0 0 1.9222621447763544 6.865677915492512 1.9222621447763544 5.642714304385635 0 2.6747425010840047 0 1.673877368056628 0.7059771852360797 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L} 8.5176;7.9886;7.5066;6.9924;6.4633;5.9813;5.8723;5.7269;5.3275;5.1385 +;-;-;-;-;-;-;-;-;- + 3150 NaN NaN 623802.2 NaN 16085 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20074 82.538 NaN 753760 35 0 38937 0.261 -1 0 93 531.8170833266972 1061.6196137201944 2 531.8173828125 MULTI HCD FTMS 0 0 0 20071 693824.375 0.5566869743695695 -10 0.26494598388671875 3 NaN NaN 2 Q 1 -1 5.4846 0 0 0.51662 0 0 563.352251324253 367.19793219800624 930.5501835222592 0 0 0 0 0 0 0 0 0 Q 0.51662 - 38 + NaN NaN 199874.8 NaN 16086 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20075 82.541 NaN 329640 35 0 42705 0.261 + 32205 VYTFQFQDF 9 67 597.7773071270942 1193.5400613209883 2 597.7775268554688 MULTI HCD FTMS 0 0 0 20071 173122.515625 0.16654406662916466 7 -0.199310302734375 4 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 78.06048673739656 0.006479972202176041 2 [Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 2 + 93.126 0 0 7.8025 7.8025 91.716 0 0 0 20 16.478174818886373 16.478174818886373 9.208187539523749 0 2.3494850021680094 1.6989700043360187 1.1549471895720984 0 [Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[Y{I|L}]S{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]Q{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}][AG]{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 7.8025;7.031;7.031;6.2632;6.1269;5.3554;5.3554;4.9183;4.5875;4.1468 -;-;-;-;+;-;-;-;-;- + 447 NaN NaN 158221.4 NaN 16087 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20076 82.545 NaN 183610 35 0 15184 0.261 + 27150 SYMWTINNF 9 65 588.2632021945177 NaN 0 588.26318359375 PEAK HCD FTMS 0 0 0 20071 70811.2890625 0.5719057596261197 5 -0.14086151123046875 5 Unmodified _SYMWTINNF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 32.78568957990786 0.10157793141031472 2 WT{I|L}M 4 6 32.225 0 0 2.7437 0 0 381.1331960441626 259.10761438541255 640.2408104295752 0 0 0 0 0 1.6307196863200843 0 0 0 WT{I|L}M 2.7437 - 113 + NaN NaN 118930.7 NaN 16088 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20077 82.548 NaN 270030 35 0 56376 0.263 + 29565 VAAVITITF 9 52 467.7840840880849 933.5536152429698 2 467.78411865234375 MULTI HCD FTMS 0 0 0 20071 103424.4609375 0.42500324892381003 -3 0.08513641357421875 6 Unmodified _VAAVITITF_ ENSG00000133027|ENST00000255389|PEMT;ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1-3|PEMT;nc|ENSG00000133027|Q9UBM1|PEMT 81.61307344734483 0.005330412723537057 2 [Q{I|L}]V{I|L}T{I|L}T{M(Oxidation (M))|F} 8 3 + 71.878 0 0 7.6994 7.6994 87.453 0 0 0 4.6040937697618745 64.4040472349296 4.6040937697618745 1.2371250542002343 0 2.5994850021680094 0 1.1549471895720984 0 [Q{I|L}]V{I|L}T{I|L}T{M(Oxidation (M))|F};[Q{I|L}]{I|L}VT{I|L}T{M(Oxidation (M))|F} 7.6994;7.5669 -;- 157 NaN NaN 127483.5 NaN 16089 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20078 82.551 NaN 340220 35 0 50271 0.261 -1 IMLYQVTEV 9 79 556.288584637793 1110.5626163423858 2 556.3079833984375 MULTI HCD FTMS 0 0 0 20071 39509.6796875 0.4951156510830253 4 -0.1146392822265625 7 Oxidation (M) _IM(Oxidation (M))LYQVTEV_ ENSG00000145569|ENST00000274217|OTULINL 12.531546534597751 0.2520865569484384 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}VV{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 -1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}VV{M(Oxidation (M))|F} + + 17.703 -2.6312 -0.36628 1.5941 1.5941 59.718 0 0 0 0 5.764837301042721 0 0 0 0 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}VV{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 1.5941 - 373 + NaN NaN 138487.8 NaN 16090 3986 20071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20080 82.556 NaN 1341100 35 0 83884 0.327 -1 0 100 426.24596776695273 850.4773826007055 2 426.2459716796875 MULTI HCD FTMS 0 0 0 20079 1335696 0.8021459284493838 -2 0.05231475830078125 1 NaN NaN 2 KQ[{M(Oxidation (M))|F}V] 4 -1 12.708 0 0 1.4942 0 0 330.16746718574376 0 330.16746718574376 0 2.346616998923796 0 0 0 0.5796896906561032 0 0 0 KQ[{M(Oxidation (M))|F}V] 1.4942 - 45 NaN NaN 290278.8 NaN 16091 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20081 82.561 NaN 1206700 35 0 289330 0.261 + 22925 QYSPLLAAF 9 68 505.2713289766905 1008.528105020181 2 505.2713928222656 MULTI HCD FTMS 0 0 0 20079 695186 0.7681577185963492 1 -0.0261688232421875 2 Unmodified _QYSPLLAAF_ ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1 81.89019881105858 0.005240739447516426 2 [YQ]S[{I|L}P]{I|L}AA{M(Oxidation (M))|F} 9 0 + 68.681 0 0 6.81 6.81 94.95 0 0 0 9.379617791072832 62.22743112049912 9.379617791072832 68.68108131561996 0 2.5 0 1.1861818737241734 0.6747425010840047 + + [YQ]S[{I|L}P]{I|L}AA{M(Oxidation (M))|F} 6.81 + + 104 NaN NaN 269649.8 NaN 16092 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20082 82.564 NaN 1061700 35 0 65370 0.261 + 14108 LAAARPRN 8 100 434.7592026191575 867.5038523051151 2 434.75921630859375 MULTI HCD FTMS 0 0 0 20079 1084117.875 1 0 0 3 Unmodified _LAAARPRN_ REV__ENSG00000186665|ENST00000580729|C17orf58;REV__nc|nan|Q2M2W7-2|C17orf58 9.347437153973935 0.5250182646323369 2 ATA 3 -1 9.3154 0 0 1.0738 0 0 237.15767839293204 384.2237948053344 621.3814731982665 0 0 0 0 0 0.3494850021680094 0 0.7059771852360797 0 ATA 1.0738 - 61 + NaN NaN 248066.5 NaN 16093 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20083 82.567 NaN 767570 35 0 66417 0.261 + -1 QYFCVAPTF 9 103 566.7588628218106 NaN 0 566.7474975585938 PEAK HCD FTMS 0 0 0 20079 52527.140625 0.25380625925234696 7 -0.20272064208984375 4 Carbamidomethyl (C) _QYFC(Carbamidomethyl (C))VAPTF_ REV__ENSG00000166450|ENST00000389286|PRTG 15.847184025352803 0.21527282152051216 2 V{M(Oxidation (M))|F}[Q{I|L}]DPT 7 -1 14.676 0 0 1.2971 0 0 166.00258349030406 162.05613123111564 328.05871472141973 0 0 0 0 0 0.3252574989159953 0 0.47490736372060927 0 V{M(Oxidation (M))|F}[Q{I|L}]DPT 1.2971 - 542 + NaN NaN 207190.9 NaN 16094 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20084 82.571 NaN 188480 35 0 24263 0.261 + 19897 NYFDEQFEF 9 53 619.7538586853301 1237.49316443746 2 619.7537231445312 MULTI HCD FTMS 0 0 0 20079 113556.65625 0.23963344088596925 6 -0.17313385009765625 5 Unmodified _NYFDEQFEF_ ENSG00000162639|ENST00000651461|HENMT1 27.223235318498237 0.1251536255799991 2 Q{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 5 49.553 0 0 4.0043 0 0 668.2456825088049 0 668.2456825088049 0 33.01029995663981 0 0 0 1.3807196863200843 0 0 0.3807196863200844 + Q{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.0043 + + 55 NaN NaN 118940.5 NaN 16095 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20085 82.574 NaN 528710 35 0 43702 0.262 + 32036 VYPNWAIGL 9 89 516.7792487294746 1031.543944525749 2 516.263427734375 MULTI HCD FTMS 0 0 0 20079 43486.66015625 0.5118453418176635 -3 0.09175872802734375 6 Unmodified _VYPNWAIGL_ ENSG00000131389|ENST00000622186|SLC6A6 36.04419817259434 0.08350412372117409 2 A{I|L}G{I|L} 4 5 31.943 0 0 3.0966 0 0 659.3066273419937 0 659.3066273419937 0 12.145052902195737 0 0 0 1.2302046884880937 0 0 0 + A{I|L}G{I|L} 3.0966 + + 887 NaN NaN 167052.5 NaN 16096 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20086 82.577 NaN 726700 35 0 76577 0.261 + 28882 TVYIHELTF 9 87 561.7948569460851 1121.5751609589702 2 561.7786254882812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TVYIHELTF_ ENST00000284268.6_1_5:14710442-14710625:-|nuORF 11.640296217721598 0.25978676193971967 2 CP[WM]Y{I|L}T{M(Oxidation (M))|F} 8 6 42.058 0 0 3.7499 0 0 62.08124586983201 0 62.08124586983201 0 7.8325964310198515 0 0 0 0 0 0.6307196863200843 0 CP[WM]Y{I|L}T{M(Oxidation (M))|F} 3.7499 - 1269 + NaN NaN 223579.4 NaN 16097 3987 20079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20088 82.582 NaN 1090600 35 0 57383 0.327 + 28797 TTRSKLGDLV 10 114 545.317042992181 1088.6195330511619 2 545.3172607421875 MULTI HCD FTMS 0 0 0 20087 667900.4375 0.741359014855614 -4 0.11792755126953125 1 Unmodified _TTRSKLGDLV_ REV__ENST00000378052.5_1_7:148994191-148994263:+|nuORF 8.745405648335112 0.42901288225909884 2 KS{I|L}{I|L}{I|L}C(Carbamidomethyl (C)) 6 -1 27.727 0 0 2.547 0 0 132.07961208663386 239.09223352603752 371.1718456126714 0 0 0 0 0 0 0 0.5866968715561641 0 KS{I|L}{I|L}{I|L}C(Carbamidomethyl (C)) 2.547 - 1014 + NaN NaN 257486.4 NaN 16098 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20089 82.587 NaN 764180 35 0 132100 0.261 + 18363 MPLNVADLI 9 97 501.2706430734108 1000.5267332136216 2 501.2708435058594 MULTI HCD FTMS 0 0 0 20087 344239.15625 0.24605286693677939 11 -0.31749725341796875 2 Oxidation (M) _M(Oxidation (M))PLNVADLI_ ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF 47.748688679222035 0.03472022231463587 2 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L} 9 1 + 47.501 0 0 4.7476 4.7476 87.378 0 0 0 2.680694551991536 28.74053193658746 2.680694551991536 9.47621246364342 0 0.8807196863200843 0.8538719643217619 0.3054621874040891 0.4247425010840047 {NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}VAD{I|L}{I|L};{[TV]|[{I|L}S]}AV{[CP]|[EA]}AD{I|L}{I|L};[{I|L}A]SV{[CP]|[EA]}AD{I|L}{I|L};{[TV]|[{I|L}S]}A{[CP]|[EA]}VAD{I|L}{I|L};[{I|L}A]S{[CP]|[EA]}VAD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L};{[TV]|[{I|L}S]}[QP]{[ES]|[DT]|[{I|L}C]}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}A[KC][EP]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[QD]|[EN]|[WG]|[KD]|[RS]}V[{I|L}P]{[DS]|[MA]|[CV]|TT};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[TP]EV[KS] 4.7476;3.8005;3.6914;3.1019;2.9928;2.4139;2.0953;1.988;0.18337;0.0088685 -;-;-;-;-;-;-;-;-;- 496 NaN NaN 212361.6 NaN 16099 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20090 82.59 NaN 523910 35 0 43620 0.261 -1 0 97 553.8298454346881 1105.645137936176 2 553.8299560546875 MULTI HCD FTMS 0 0 0 20087 237473.28125 0.5945155713714491 -8 0.212677001953125 3 NaN NaN 2 NH 2 -1 7.4743 0 0 0.67601 0 0 123.0896525274032 728.4103487604124 851.5000012878156 0 0 0 0 0 0 0 0 0 NH 0.67601 - 117 + NaN NaN 164567.7 NaN 16100 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20091 82.594 NaN 437870 35 0 137150 0.261 + 6589 FPLHLPLEL 9 66 539.818435404094 1077.6223178749879 2 540.33056640625 MULTI HCD FTMS 0 0 0 20087 34921.109375 0.17877049436684622 4 -0.11745452880859375 4 Unmodified _FPLHLPLEL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 23.1484247019978 0.1603590852062899 2 E{I|L} 2 7 24.464 0 0 2.2702 0 0 817.4862324732127 0 817.4862324732127 0 9.859856381998782 0 0 0 0.3494850021680094 0 0 0 + E{I|L} 2.2702 + + 32 NaN NaN 157577.1 NaN 16101 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20092 82.597 NaN 584880 35 0 56193 0.261 -1 0 85 566.2980512400009 1130.5815495468016 2 566.2977294921875 MULTI HCD FTMS 0 0 0 20087 151648.5625 0.4244909677161447 82 -1.9220123291015625 5 NaN NaN 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 -1 [YK] + + 41.643 5.2288 1.7959 3.6833 3.6833 60.62 0 0 0 0 29.424260384580805 0 0 0 2.2302046884880937 0 0 0 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.6833 - 744 + NaN NaN 192488.3 NaN 16102 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20093 82.6 NaN 148310 35 0 10528 0.261 + 12013 KGYEDWLL 8 59 512.2615978553689 1022.5086427775378 2 512.2616577148438 MULTI HCD FTMS 0 0 0 20087 54406.40625 0.3010625263223606 11 -0.31749725341796875 6 Unmodified _KGYEDWLL_ ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF 11.640296217721598 0.50814828952472 2 [Y{I|L}]VVT[WE]N 8 7 + 31.884 0 0 3.1182 3.1182 88.584 0 0 0 13.748162098248997 7.614393726401687 7.614393726401687 31.88424994129406 0 0 1.6989700043360187 0 0 [Y{I|L}]VVT[WE]N 3.1182 - 218 NaN NaN 107799.3 NaN 16103 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20094 82.604 NaN 119200 35 0 21329 0.261 -1 MIPCCLCH 8 40 488.6980707975579 975.3815886619158 2 488.6984558105469 MULTI HCD FTMS 0 0 0 20087 34122.51953125 0.39385399723236136 1 -0.0294647216796875 7 Carbamidomethyl (C) _MIPCC(Carbamidomethyl (C))LCH_ ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;nc|ENSG00000111731|Q86YS7|C2CD5 2.8892196856762586 0.5377058178582064 2 M 1 -1 3.0989 0 0 0.31772 0 0 487.25080360507826 354.0776461236938 841.3284497287721 0 0 0 0 0 0 0 0 0 M 0.31772 + + 5 + NaN NaN 112390 NaN 16104 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20095 82.607 NaN 170240 35 0 44403 0.261 + -1 ALLSPCAL 8 40 422.73192764902836 NaN 0 422.7322082519531 PEAK HCD FTMS 0 0 0 20087 16691.431640625 0.39030938982668756 1 -0.0294647216796875 8 Carbamidomethyl (C) _ALLSPC(Carbamidomethyl (C))AL_ REV__ENST00000539658.1_1_12:121148334-121149523:+|nuORF 5.760428011301431 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117229.1 NaN 16105 3988 20087 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20097 82.612 NaN 848960 35 0 101270 0.327 + 35353 YYALEVSYF 9 90 577.773813394787 1153.533073856374 2 577.7738037109375 MULTI HCD FTMS 0 0 0 20096 203085.21875 0.03947058508274509 19 -0.5438766479492188 1 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 54.773552608820026 0.024892918755467567 2 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F} 9 2 + 58.413 0 0 5.0638 5.0638 91.21 0 0 0 5.89784715066596 37.89090997899336 5.89784715066596 38.340766528098555 0 2.1549471895720984 0 0.3252574989159953 0 {[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{I|L}EVSY{M(Oxidation (M))|F};{[WT]|[RM]}Q[RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};{[WT]|[RM]}Q[RN]{M(Oxidation (M))|F}A[MT];{[WT]|[RM]}[AG][RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};{[WT]|[RM]}Q[RN]A{M(Oxidation (M))|F}[MT];{[WT]|[RM]}[AG][RN]{M(Oxidation (M))|F}A[MT] 5.0638;1.74;1.0501;0.94177;0.48381;0.25182 -;-;-;-;-;- 1044 NaN NaN 239270 NaN 16106 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20098 82.616 NaN 274110 35 0 67096 0.261 + 33560 YILEQNSSII 10 56 590.3156678044901 1178.61678267578 2 590.8161010742188 MULTI HCD FTMS 0 0 0 20096 109688.5625 0.3876259937927434 5 -0.14708709716796875 2 Unmodified _YILEQNSSII_ REV__ENSG00000183735|ENST00000331710|TBK1 13.042465956692817 0.38911719078024076 2 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L} 11 -1 + 37.963 0 0 3.221 3.221 83.184 0 0 0 7.3675856522541885 30.528198119064783 7.3675856522541885 7.060323256818222 0 0.3494850021680094 0 0.4247425010840047 0 [Y{I|L}]{I|L}T[NG]E[SG]{I|L}{I|L};[Y{I|L}]{I|L}T[NG]E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}T{[WN]|[YH]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[Y{I|L}]{I|L}[PA]W{[SA]|[TG]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3.221;2.622;1.7074;0.67069 -;-;-;- 132 NaN NaN 141600.9 NaN 16107 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20099 82.62 NaN 582540 35 0 71205 0.261 -1 MLSLICSCF 9 81 573.7515771049025 1145.4886012766049 2 574.2315063476562 MULTI HCD FTMS 0 0 0 20096 7502.572265625 0.12199657065800619 5 -0.14708709716796875 3 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LSLIC(Carbamidomethyl (C))SC(Carbamidomethyl (C))F_ ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2 12.531546534597751 0.2520865569484384 2 [R{M(Oxidation (M))|F}]C{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DPT{M(Oxidation (M))|F} 9 -1 + 35.314 0 0 3.0829 3.0829 82.103 0 0 0 16.897737521010832 6.989700043360191 6.989700043360191 4.717262228329567 0 0 1.5228787452803376 0.3252574989159953 0 [R{M(Oxidation (M))|F}]C{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DPT{M(Oxidation (M))|F};S[YR]A[CS]DPT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}KA[CS]DPT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DPT{M(Oxidation (M))|F};S[YR]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DPT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}K{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DPT{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DPT{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[MG]|[TS]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}[CS]AK{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[HN]N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3.0829;2.6711;2.5173;2.2099;2.1008;1.9471;1.406;1.0848;0.53636;0.27737 -;-;-;-;-;-;-;-;-;- 451 + NaN NaN 183704.5 NaN 16108 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20100 82.623 NaN 311080 35 0 81902 0.261 + 31456 VYDPLFSQL 9 46 541.2822145297783 1080.5498761263566 2 541.2818603515625 MULTI HCD FTMS 0 0 0 20096 83245.0703125 0.11193251288329596 7 -0.2026824951171875 4 Unmodified _VYDPLFSQL_ ENSG00000100104|ENST00000215917|SRRD 33.4449034751529 0.0954363425218424 2 {M(Oxidation (M))|F}SQ{I|L} 4 5 38.928 0 0 3.6026 0 0 587.2960378174616 0 587.2960378174616 0 21.480625354554373 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}SQ{I|L} 3.6026 + + 20 NaN NaN 136286.5 NaN 16109 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20101 82.626 NaN 367200 35 0 52746 0.261 + -1 EMESTFIF 8 82 510.2231097550899 1018.4316665769799 2 510.22271728515625 MULTI HCD FTMS 0 0 0 20096 282826.21875 1 0 0 5 Oxidation (M) _EM(Oxidation (M))ESTFIF_ REV__ENSG00000139144|ENST00000538779|PIK3C2G;REV__nc|ENSG00000139144|O75747-2|PIK3C2G;REV__PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant 6.354104778181461 0.5325651638111438 2 {I|L}EW{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6 -1 13.153 0 0 1.2915 0 0 164.99600752212035 0 164.99600752212035 0 9.17358221842868 0 0 0 0 0 0 0 {I|L}EW{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 1.2915 - 80 + NaN NaN 155642.8 NaN 16110 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20102 82.63 NaN 282850 35 0 23734 0.261 -1 0 74 437.2368288074376 872.4591046816752 2 437.23681640625 MULTI HCD FTMS 0 0 0 20096 172351.984375 0.9452475856205147 2 -0.059051513671875 6 NaN NaN 2 YP[TA][{M(Oxidation (M))|F}V] 6 -1 13.645 0 0 1.564 0 0 176.10472304511876 0 176.10472304511876 0 4.7888075018059535 0 0 0 0.4247425010840047 0 0.4247425010840047 0 YP[TA][{M(Oxidation (M))|F}V] 1.564 - 207 NaN NaN 150827.2 NaN 16111 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20103 82.633 NaN 240830 35 0 17435 0.261 + 18464 MPWILTDHIL 10 66 619.8337394077001 1237.6529258822002 2 619.8335571289062 MULTI HCD FTMS 0 0 0 20096 87330.9296875 1 0 0 7 Unmodified _MPWILTDHIL_ ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1 56.17704186161178 0.05532499666593632 2 MPW{I|L}{I|L}TDH{I|L}{I|L} 10 0 + 47.357 0 0 3.8263 3.8263 82.369 0 0 0 24.609178215846654 3.5071123335628585 3.5071123335628585 3.7628749457997657 0 1.9489700043360187 0 0.3252574989159953 0 + + MPW{I|L}{I|L}TDH{I|L}{I|L};MPW{I|L}{I|L}T[{I|L}A]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};[WP]M{I|L}{I|L}TDH{I|L}{I|L};[WP]{I|L}M{I|L}TDH{I|L}{I|L};[WP][WK]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}H{I|L}{I|L} 3.8263;3.5223;2.3098;1.8243;0.41594 +;-;-;-;- + 291 + NaN NaN 140151 NaN 16112 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20104 82.636 NaN 196130 35 0 13608 0.261 + 5370 FGIYGPEQVQ 10 75 569.282629068764 1136.5507052043279 2 569.2831420898438 MULTI HCD FTMS 0 0 0 20096 53278.10546875 0.4338776592560188 17 -0.48818206787109375 8 Unmodified _FGIYGPEQVQ_ ENSG00000091536|ENST00000647165|MYO15A 21.536976647645854 0.3096624038397699 2 [YV]WWEQN{I|L} 8 7 [YV]W + + 32.241 5.6864 1.2687 2.8367 2.8367 60.023 0 0 0 0 9.053082877329985 0 0 0 1.1237125054200234 0 0 0.5941876774005248 [YV]WWEQN{I|L} 2.8367 - 431 + NaN NaN 122748.7 NaN 16113 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20105 82.64 NaN 135700 35 0 10985 0.263 + 34526 YPGTHSWG 8 59 452.7016119456189 NaN 0 452.70135498046875 PEAK HCD FTMS 0 0 0 20096 38768.8125 1 0 0 9 Unmodified _YPGTHSWG_ ENST00000588831.5_1_19:36427895-36428069:+|nuORF 2.8892196856762586 0.38822285293237185 2 N{I|L}H 3 7 7.167 0 0 0.79334 0 0 101.93693604980577 434.22788416080317 536.1648202106089 0 0 0 0 0 0 0 0 0 N{I|L}H 0.79334 - 28 + NaN NaN 108732.3 NaN 16114 3989 20096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20107 82.645 NaN 1781300 35 0 79061 0.327 + 19301 NLVLEKSSR 9 117 523.3037994738958 1044.5930460145914 2 523.303955078125 MULTI HCD FTMS 0 0 0 20106 1857863.125 0.8386849710281385 -6 0.1802215576171875 1 Unmodified _NLVLEKSSR_ ENSG00000164309|ENST00000446378|CMYA5;ENSG00000164309|ENST00000446378|CMYA5 10.073929032068715 0.27331982688540024 2 Q 1 9 9.2917 0 0 0.88951 0 0 546.325802466618 367.197013521803 913.522815988421 0 0 0 0 0 0.3807196863200844 0 0 0 Q 0.88951 - 163 + NaN NaN 356572 NaN 16115 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20108 82.649 NaN 697590 35 0 116880 0.261 + 24468 RYLDLILNDF 10 74 641.345264048877 1280.6759751645538 2 641.3457641601562 MULTI HCD FTMS 0 0 0 20106 243274.28125 0.45482710115691233 1 -0.02622222900390625 2 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 93.44831873261192 0.0007377448955982666 2 [YR]{I|L}D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F} 10 0 + 84.844 0 0 6.625 6.625 88.941 0 0 0 3.379231027444405 58.72994718840225 3.379231027444405 9.164539485499262 0 2.6989700043360187 0 0.3252574989159953 0.4247425010840047 + + [YR]{I|L}D{I|L}{I|L}{I|L}ND{M(Oxidation (M))|F};[YR]{I|L}D{I|L}{I|L}{I|L}GGD{M(Oxidation (M))|F} 6.625;5.9094 +;- + 246 NaN NaN 195994.5 NaN 16116 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20109 82.653 NaN 712470 35 0 69373 0.263 + 32199 VYTFGLGQF 9 98 516.2630745592927 1030.5115961853853 2 516.779052734375 MULTI HCD FTMS 0 0 0 20106 36367.83984375 0.29314605949807365 3 -0.0846710205078125 3 Unmodified _VYTFGLGQF_ ENSG00000156313|ENST00000645032|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834|RPGR 57.47134341890925 0.0211188941628804 2 {M(Oxidation (M))|F}{I|L}[DP]WA{I|L} 7 9 40.87 0 0 3.9659 0 0 0 185.09292017154533 185.09292017154533 20.436457164228443 0 0 0 0 0.6307196863200843 1.6989700043360187 0.566901560044258 0 {M(Oxidation (M))|F}{I|L}[DP]WA{I|L} 3.9659 - 2144 + NaN NaN 197601.6 NaN 16117 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20110 82.656 NaN 474870 35 0 184760 0.261 + 6590 FPLHLPLEL 9 79 539.818435404094 1077.6223178749879 2 539.8182983398438 MULTI HCD FTMS 0 0 0 20106 59500.34375 0.18233306254859355 6 -0.16985321044921875 4 Unmodified _FPLHLPLEL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 16.942295170755138 0.21397866736869717 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]E{I|L}M 8 5 33.783 0 0 3.135 0 0 0 127.16916781078784 127.16916781078784 15.199470677014858 0 0 0 0 0.3807196863200844 2 0.28872548999643577 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]E{I|L}M 3.135 - 364 NaN NaN 162665.1 NaN 16118 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20111 82.659 NaN 127150 35 0 19950 0.261 + 21659 PYSEYFEYF 9 45 622.7612129118122 1243.5078728904243 2 622.7619018554688 MULTI HCD FTMS 0 0 0 20106 51204.453125 0.40983459969815345 3 -0.0846710205078125 5 Unmodified _PYSEYFEYF_ ENSG00000171720|ENST00000305264|HDAC3;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENST00000491581.5_1_5:141004689-141007494:-|nuORF;nc|ENSG00000171720|O15379-2|HDAC3 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 5 43.8 0 0 3.5223 0 0 639.25395400215 0 639.25395400215 0 16.352744048435923 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.5223 + + 31 NaN NaN 120195 NaN 16119 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20112 82.663 NaN 80019 35 0 13978 0.264 + 21267 PRNGPGES 8 37 407.19683539208575 NaN 0 407.2040100097656 PEAK HCD FTMS 0 0 0 20106 6618.1943359375 0.8389335429522848 -1 0.03282928466796875 6 Unmodified _PRNGPGES_ REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-2|PDE4DIP 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95690.6 NaN 16120 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20113 82.666 NaN 142960 35 0 25435 0.261 + 11669 IYVSNQNYVI 10 48 606.8186649265614 1211.6227769199227 2 606.8009643554688 MULTI HCD FTMS 0 0 0 20106 7857.3291015625 0.12831179426085154 -4 0.1146392822265625 7 Unmodified _IYVSNQNYVI_ REV__ENSG00000221937|ENST00000408947|TAS2R40 10.073929032068715 0.4168838835836452 2 [Y{I|L}][YT]A[WH]Q 8 -1 21.884 0 0 1.8062 0 0 0 146.08425676996094 146.08425676996094 18.583493856482246 0 0 0 0 0 2 0 0 [Y{I|L}][YT]A[WH]Q 1.8062 - 46 NaN NaN 113398.4 NaN 16121 3990 20106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20115 82.671 NaN 4260600 35 0 505310 0.327 + 15169 LMSLIINTF 9 113 534.2939490319458 1066.5733451306915 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20114 2949136 0.9106711126612496 1 -0.02893829345703125 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 206.74871869215147 9.242385646021313E-18 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 97.084 0 0 9.1024 9.1024 94.54 0 0 0 4.762036441594191 22.974673466932515 4.762036441594191 10.496812376923046 0 2.6989700043360187 0 2.2179001828205482 0.7614393726401688 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}[{M(Oxidation (M))|F}T]N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[QT]V{M(Oxidation (M))|F} 9.1024;8.1182;7.5251;6.541;5.9644;5.5424;5.498;5.4742;5.3516;5.29 +;-;-;-;-;-;-;-;-;- + 4117 NaN NaN 748735.8 NaN 16122 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20116 82.675 NaN 3455600 35 0 394840 0.228 + 17909 MILELDPTF 9 91 547.7754196984221 1093.536286463644 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20114 2123221.5 0.3541738064666258 9 -0.25183868408203125 2 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 106.63 0 0 9.7506 9.7506 92.466 0 0 0 18.777063018021863 40.41899382937578 18.777063018021863 7.486964716146787 0 2.930884548956689 2 1.3494850021680094 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DTP{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DT{M(Oxidation (M))|F}P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DT{M(Oxidation (M))|F}P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}AE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}{[CP]|[EA]}YP 9.7506;9.0659;8.5543;7.8697;7.4475;6.8281;6.3744;6.2512;5.6319;5.1781 +;-;-;-;-;-;-;-;-;- + 2057 NaN NaN 496610.6 NaN 16123 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20117 82.678 NaN 511290 35 0 35292 0.261 + 34607 YPNSWFRF 8 78 558.7666293160219 1115.5187056988436 2 558.7667846679688 MULTI HCD FTMS 0 0 0 20114 279641.1875 0.35635584874406173 9 -0.25183868408203125 3 Unmodified _YPNSWFRF_ REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF;REV__nc|ENSG00000235217|Q9H489|TSPY26P 24.67388899826682 0.4122521268485776 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 9 -1 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} + + 76.349 23.724 9.1202 6.8443 6.8443 65.354 0 0 0 0 34.961987796517704 0 0 0 2.610924374808178 0 1.055462187404089 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DYG{M(Oxidation (M))|F} 6.8443 - 930 + NaN NaN 173657.1 NaN 16124 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20118 82.682 NaN 432920 35 0 37782 0.261 + 28905 TWFTAGAKLLF 11 82 627.8475655601902 1253.6805781871803 2 627.8478393554688 MULTI HCD FTMS 0 0 0 20114 180046.3125 0.13153202423840402 23 -0.658660888671875 4 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 94.90867108109511 0.013953977517728908 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 88.056 0 0 7.0238 7.0238 89.49 0 0 0 7.269987279362624 73.12124996495166 7.269987279362624 9.164539485499247 0 3.2302046884880937 0 1.7440840204505517 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAGAK{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTA[AG]K{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TAQ{I|L}{I|L}K{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TQAK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]{I|L}{I|L}K{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]WTAQ{I|L}{I|L}K{M(Oxidation (M))|F};{I|L}{I|L}K[HV]GAAAD{I|L}{M(Oxidation (M))|F} 7.0238;6.2928;6.0043;5.5268;5.2733;5.0261;4.7236;4.295;4.0065;3.4537 -;+;-;+;-;-;-;-;-;- + 1807 NaN NaN 155455.4 NaN 16125 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20119 82.685 NaN 327560 35 0 41707 0.261 + 20961 PLFTTTQLFT 10 67 584.8157928837553 NaN 0 584.7979125976562 PEAK HCD FTMS 0 0 0 20114 8653.8115234375 0.34472677334371127 -3 0.0885162353515625 5 Unmodified _PLFTTTQLFT_ REV__ENSG00000158470|ENST00000371711|B4GALT5 20.453626601364224 0.27696038250606103 2 {I|L}Y{[CP]|[EA]}{M(Oxidation (M))|F}TT 7 -1 26.132 0 0 2.2381 0 0 132.09613472793131 207.11240564517814 339.2085403731095 0 0 0 0 0 0 0 1.1307196863200843 0 {I|L}Y{[CP]|[EA]}{M(Oxidation (M))|F}TT 2.2381 - 208 + NaN NaN 145925.8 NaN 16126 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20120 82.688 NaN 307350 35 0 27960 0.261 + 34890 YSFLDYVM 8 62 527.233662982494 1052.452773031788 2 527.234130859375 MULTI HCD FTMS 0 0 0 20114 89111.265625 0.5183736048269985 4 -0.12081146240234375 6 Oxidation (M) _YSFLDYVM(Oxidation (M))_ ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF 53.57557251787612 0.1056313556323 2 VD{I|L}DYV{M(Oxidation (M))|F} 7 3 58.219 0 0 5.5318 0 0 183.0576526306458 0 183.0576526306458 0 47.26017550314786 0 0 0 1.9247425010840047 0 0 0 VD{I|L}DYV{M(Oxidation (M))|F} 5.5318 - 168 + NaN NaN 131589 NaN 16127 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20121 82.692 NaN 132270 35 0 13863 0.261 -1 MPLSEDFVWM 10 55 635.7775789827331 1269.540605032266 2 635.7782592773438 MULTI HCD FTMS 0 0 0 20114 49872.2421875 0.6939318478631175 1 -0.02893829345703125 7 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 25.399314129420986 0.2735354021946395 2 [{M(Oxidation (M))|F}E][RH]{[{M(Oxidation (M))|F}C]|[YS]}VW{M(Oxidation (M))|F} 9 -1 + 36.941 0 0 2.9098 2.9098 85.959 0 0 0 0.7429465876939716 29.95113412721772 0.7429465876939716 11.47817481888638 0 1 0 0.3807196863200844 0 [{M(Oxidation (M))|F}E][RH]{[{M(Oxidation (M))|F}C]|[YS]}VW{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][RH][WY]W{M(Oxidation (M))|F} 2.9098;2.0057 -;- 25 NaN NaN 106288.1 NaN 16128 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20122 82.695 NaN 117480 35 0 8519.7 0.261 + 18465 MPWILTDHIL 10 51 619.8337394077001 1237.6529258822002 2 619.8351440429688 MULTI HCD FTMS 0 0 0 20114 40134.05078125 0.45956284817834175 2 -0.05844879150390625 8 Unmodified _MPWILTDHIL_ ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1 17.11289562659939 0.35104376501799556 2 {I|L}{I|L} 2 8 17.959 0 0 1.451 0 0 993.4686250102953 0 993.4686250102953 0 2.9093938099548904 0 0 0 0 0 0 0 + {I|L}{I|L} 1.451 + + 97 NaN NaN 109904.6 NaN 16129 3991 20114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20124 82.7 NaN 893930 35 0 62516 0.327 + 19217 NIVHRGVG 8 90 426.24596776695273 850.4773826007055 2 426.2460021972656 MULTI HCD FTMS 0 0 0 20123 954978.0625 0.5735075680340858 3 -0.0918731689453125 1 Unmodified _NIVHRGVG_ nc|ENSG00000015153|Q8IY57-4|YAF2 5.230669730166228 0.5342319408533849 2 Q 1 8 10 0 0 1.1758 0 0 220.13126462322174 499.2762545221313 719.407519145353 0 0 0 0 0 0.6505149978319906 0 0 0 Q 1.1758 - 51 + NaN NaN 219148.9 NaN 16130 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20125 82.704 NaN 990920 35 0 48052 0.261 -1 0 101 531.8170833266972 1061.6196137201944 2 531.8174438476562 MULTI HCD FTMS 0 0 0 20123 848794.5625 0.6810266313567716 -4 0.11745452880859375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.0921 0 0 896.5414867444116 0 896.5414867444116 0 0.5989437914419682 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0921 - 70 + NaN NaN 243556.1 NaN 16131 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20126 82.708 NaN 1516000 35 0 210900 0.261 + 12879 KYFPYLVLL 9 100 578.3442991792316 1154.674045425263 2 578.3445434570312 MULTI HCD FTMS 0 0 0 20123 601926.0625 0.7707717571889178 -3 0.08798980712890625 3 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 54.773552608820026 0.024892918755467567 2 [YK]{M(Oxidation (M))|F}PY{I|L}V{I|L}{I|L} 9 0 + 56.124 0 0 4.8606 4.8606 84.361 0 0 0 2.922152515121219 27.469209759735698 2.922152515121219 5.593407049493635 0 2.0752574989159953 0 0 0 + + [YK]{M(Oxidation (M))|F}PY{I|L}V{I|L}{I|L};[Y{M(Oxidation (M))|F}]KPY{I|L}V{I|L}{I|L};[{I|L}V]{I|L}{M(Oxidation (M))|F}Q{I|L}Y{M(Oxidation (M))|F}{I|L};[{I|L}V]{I|L}{M(Oxidation (M))|F}{I|L}QY{M(Oxidation (M))|F}{I|L};[{I|L}V]{I|L}{M(Oxidation (M))|F}[AG]{I|L}Y{M(Oxidation (M))|F}{I|L};[{I|L}V]{I|L}{M(Oxidation (M))|F}{I|L}[AG]Y{M(Oxidation (M))|F}{I|L};[{I|L}V]{I|L}{M(Oxidation (M))|F}K[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L} 4.8606;4.3762;2.3635;2.211;1.566;1.4135;1.0505 +;-;-;-;-;-;- + 1088 NaN NaN 323610.4 NaN 16132 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20127 82.711 NaN 294720 35 0 55894 0.261 + 22926 QYSPLLAAF 9 49 505.2713289766905 1008.528105020181 2 505.271484375 MULTI HCD FTMS 0 0 0 20123 152400.15625 0.1683971718917342 6 -0.16722869873046875 4 Unmodified _QYSPLLAAF_ ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1 19.256988751693697 0.19398022840297344 2 AA{M(Oxidation (M))|F} 3 6 40.005 0 0 3.9667 0 0 701.3741858862755 0 701.3741858862755 0 32.557809497117844 0 0 0 1.3807196863200843 0 0 0 + AA{M(Oxidation (M))|F} 3.9667 + + 42 NaN NaN 124115.2 NaN 16133 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20128 82.714 NaN 439320 35 0 37592 0.261 + 5447 FIGYPDESLK 10 73 584.797603448553 1167.580653963906 2 585.8136596679688 MULTI HCD FTMS 0 0 0 20123 17656.02734375 0.3866722489612116 1 -0.029510498046875 5 Unmodified _FIGYPDESLK_ REV__ENSG00000105671|ENST00000247003|DDX49;REV__ENST00000599373.5_1_19:19030550-19032753:+|nuORF 10.823927491677226 0.4098686510432541 2 E{I|L}{M(Oxidation (M))|F}ST 5 -1 52.423 0 0 4.4899 0 0 0 587.2463472955686 587.2463472955686 25.80652530802702 0 0 0 0 0.5 1.3979400086720375 0 0 E{I|L}{M(Oxidation (M))|F}ST 4.4899 - 690 + NaN NaN 180374.6 NaN 16134 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20129 82.718 NaN 191110 35 0 38502 0.263 + 29566 VAAVITITF 9 42 467.7840840880849 933.5536152429698 2 467.7841491699219 MULTI HCD FTMS 0 0 0 20123 78704.59375 0.32342163300413473 3 -0.0918731689453125 6 Unmodified _VAAVITITF_ ENSG00000133027|ENST00000255389|PEMT;ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1-3|PEMT;nc|ENSG00000133027|Q9UBM1|PEMT 64.23631603340823 0.01165516075559909 2 [Q{I|L}]{I|L}VT{I|L}T{M(Oxidation (M))|F} 8 4 + 60.239 0 0 6.4527 6.4527 84.919 0 0 0 0.10599059276970024 45.56810945375766 0.10599059276970024 0.5237875363565792 0 1.774227503252014 0 1.1861818737241734 0 [Q{I|L}]{I|L}VT{I|L}T{M(Oxidation (M))|F};[Q{I|L}]V{I|L}T{I|L}T{M(Oxidation (M))|F};[Q{I|L}]{I|L}VT{M(Oxidation (M))|F}[{I|L}T];[Q{I|L}]V{I|L}T{M(Oxidation (M))|F}[{I|L}T];[Q{I|L}]V[YV]V[{I|L}T] 6.4527;6.3965;2.1877;2.1316;0.75773 -;-;-;-;- 88 NaN NaN 127251.7 NaN 16135 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20130 82.721 NaN 146400 35 0 13728 0.261 + 32206 VYTFQFQDF 9 54 597.7773071270942 1193.5400613209883 2 597.7782592773438 MULTI HCD FTMS 0 0 0 20123 49166.08203125 0.047297829587020106 13 -0.3607025146484375 7 Unmodified _VYTFQFQDF_ ENSG00000103335|ENST00000301015|PIEZO1 19.625955294349634 0.19079243933902879 2 [Y{I|L}]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}QD{M(Oxidation (M))|F} 9 2 + 61.806 0 0 5.1784 5.1784 87.207 0 0 0 14.867574738500338 38.8173657553704 14.867574738500338 9.208187539523749 0 1.8494850021680094 1.5228787452803376 0 0 [Y{I|L}]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}QD{M(Oxidation (M))|F};[Y{I|L}]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}[AG]D{M(Oxidation (M))|F} 5.1784;4.4069 -;- 120 NaN NaN 115752.6 NaN 16136 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20131 82.724 NaN 229270 35 0 20840 0.261 + 5314 FFKNRGPFV 9 84 556.3078361842468 1110.6011194352934 2 556.3087768554688 MULTI HCD FTMS 0 0 0 20123 40952.73046875 0.39575706140982675 2 -0.0590972900390625 8 Unmodified _FFKNRGPFV_ REV__ENSG00000175048|ENST00000359775|ZDHHC14;REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14 7.910154910731844 0.2910521888787154 2 DPT{M(Oxidation (M))|F} 4 -1 18.672 0 0 1.6813 0 0 632.3953622731023 0 632.3953622731023 0 11.682437647924218 0 0 0 0 0 0 0 DPT{M(Oxidation (M))|F} 1.6813 - 187 + NaN NaN 139701.8 NaN 16137 3992 20123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20133 82.729 NaN 1400300 35 0 73262 0.327 -1 0 125 545.317042992181 1088.6195330511619 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20132 813140.375 0.9025730685336233 1 -0.0295867919921875 1 NaN NaN 2 KS{I|L}{I|L}{I|L}C(Carbamidomethyl (C)) 6 -1 24.808 0 0 2.2789 0 0 132.07901586271424 239.09221826724846 371.1712341299627 0 0 0 0 0 0 0 0.566901560044258 0 KS{I|L}{I|L}{I|L}C(Carbamidomethyl (C)) 2.2789 - 830 + NaN NaN 315781.8 NaN 16138 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20134 82.734 NaN 442620 35 0 25140 0.263 + 20904 PKGPRSRA 8 88 434.7592026191575 867.5038523051151 2 434.75921630859375 MULTI HCD FTMS 0 0 0 20132 333787.96875 0.3078890003081999 6 -0.1705322265625 2 Unmodified _PKGPRSRA_ ENST00000381298.6_1_5:55290715-55290820:-|nuORF 4.75600775471527 0.5349361699807423 2 ATV 3 8 9.2344 0 0 1.0645 0 0 237.15798417092736 356.17698084049067 593.334965011418 0 0 0 0 0 0.28872548999643577 0 0.3807196863200844 0 ATV 1.0645 - 46 + NaN NaN 152561.1 NaN 16139 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20135 82.737 NaN 947620 35 0 120110 0.261 + 11230 IYLDLPQNF 9 74 561.7948569460851 1121.5751609589702 2 561.7791137695312 MULTI HCD FTMS 0 0 0 20132 64481.73828125 0.6576932700421773 3 -0.08518218994140625 3 Unmodified _IYLDLPQNF_ ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF 24.67388899826682 0.14717941214954053 2 P[WM]Y{I|L}T{M(Oxidation (M))|F} 7 7 38.677 0 0 3.4484 0 0 165.1103575250615 0 165.1103575250615 0 1.1991128507179383 0 0 0 0 0 1.2971062485323517 0 P[WM]Y{I|L}T{M(Oxidation (M))|F} 3.4484 - 1465 + NaN NaN 226662.1 NaN 16140 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20136 82.741 NaN 828530 35 0 74869 0.261 + 18024 MLLIILLYD 9 114 553.8298454346881 1105.645137936176 2 553.8300170898438 MULTI HCD FTMS 0 0 0 20132 356809.4375 0.8932742474835276 -3 0.0846710205078125 4 Unmodified _MLLIILLYD_ REV__ENSG00000152766|ENST00000371930|ANKRD22 5.230669730166228 0.3113646817964458 2 NH{I|L}RS[{I|L}P]{M(Oxidation (M))|F} 8 -1 15.187 0 0 1.3736 0 0 123.09142130559151 0 123.09142130559151 0 9.257593903009608 0 0 0 0 0 0.2614393726401688 0 NH{I|L}RS[{I|L}P]{M(Oxidation (M))|F} 1.3736 - 494 + NaN NaN 217307.1 NaN 16141 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20137 82.744 NaN 198950 35 0 32408 0.261 + 4519 EYLDKWFVL 9 48 606.8186649265614 1211.6227769199227 2 606.8187255859375 MULTI HCD FTMS 0 0 0 20132 28848.00390625 0.47109381498592284 -2 0.05844879150390625 5 Unmodified _EYLDKWFVL_ ENSG00000136021|ENST00000360820|SCYL2 27.628801355627647 0.12213550946336599 2 [Y{I|L}][VS][KT]D{I|L}HH 10 8 + 24.895 0 0 2.0546 2.0546 81.944 0 0 0 5.250678166152124 4.259687322722812 4.259687322722812 5.250678166152124 0 0 2 0 0 [Y{I|L}][VS][KT]D{I|L}HH;[YE]{I|L}D[WK]{M(Oxidation (M))|F}V{I|L};[YE]{I|L}{[MS]|[{M(Oxidation (M))|F}A]}[NP]{M(Oxidation (M))|F}V{I|L};[KT][C(Carbamidomethyl (C))M][WK]{M(Oxidation (M))|F}V{I|L} 2.0546;1.6213;0.61285;0.17684 -;+;-;- + 72 NaN NaN 112753.9 NaN 16142 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20138 82.747 NaN 289770 35 0 18324 0.261 -1 IMLYQVTEV 9 80 556.288584637793 1110.5626163423858 2 556.3070678710938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _IM(Oxidation (M))LYQVTEV_ ENSG00000145569|ENST00000274217|OTULINL 12.531546534597751 0.2520865569484384 2 S[HD]DPT{M(Oxidation (M))|F} 7 -1 24.742 0 0 2.2279 0 0 293.2355422230483 0 293.2355422230483 0 4.308641390345116 0 0 0 0 0 0.3807196863200844 0 S[HD]DPT{M(Oxidation (M))|F} 2.2279 - 555 + NaN NaN 141605 NaN 16143 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20139 82.751 NaN 76596 35 0 11222 0.261 -1 CYYFVIKEF 9 44 634.8056534147986 1267.596753896397 2 634.8043212890625 MULTI HCD FTMS 0 0 0 20132 8110.52294921875 0.1260514716854764 7 -0.193389892578125 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))YYFVIKEF_ ENSG00000135898|ENST00000650999|GPR55 6.723162845929126 0.3000504726104499 2 E{M(Oxidation (M))|F} 2 -1 25.217 0 0 1.9893 0 0 973.4772261157995 0 973.4772261157995 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 E{M(Oxidation (M))|F} 1.9893 + + 8 NaN NaN 98859.7 NaN 16144 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20140 82.754 NaN 212430 35 0 28173 0.264 + 28282 TLPRIIKI 8 46 477.32903712336395 952.6435213135279 2 477.3287658691406 MULTI HCD FTMS 0 0 0 20132 30544.564453125 0.48216668431250687 -3 0.0846710205078125 8 Unmodified _TLPRIIKI_ REV__ENSG00000111271|ENST00000313698|ACAD10;REV__ENST00000413681.7_1_12:112130513-112186840:+|nuORF;REV__ENST00000508303.5_1_12:112159488-112186840:+|nuORF;REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10;REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10;REV__nc|ENSG00000111271|Q6JQN1-5|ACAD10 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.4833 0 0 494.426463063331 308.1621492975219 802.588612360853 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.4833 - 9 + NaN NaN 117659.2 NaN 16145 3993 20132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20142 82.759 NaN 915560 35 0 223620 0.326 + 19938 NYFSKLWLL 9 65 592.3293207963309 1182.6440886594617 2 592.3474731445312 MULTI HCD FTMS 0 0 0 20141 23672.5703125 0.2938931001552447 -2 0.0590972900390625 1 Unmodified _NYFSKLWLL_ ENSG00000100982|ENST00000372409|PCIF1 24.990960013464015 0.14443998892849796 2 [YN]{M(Oxidation (M))|F}S 4 5 37.792 0 0 3.1955 0 0 0 668.4128512018186 668.4128512018186 16.822581265925436 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{M(Oxidation (M))|F}S 3.1955 + + 88 + NaN NaN 226597.3 NaN 16146 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20143 82.763 NaN 441810 35 0 69020 0.261 + 6393 FPHANIWDIL 10 73 613.3221011139482 1224.6296492946963 2 613.3217163085938 MULTI HCD FTMS 0 0 0 20141 147083.53125 0.3042064455916086 -2 0.0590972900390625 2 Unmodified _FPHANIWDIL_ ENSG00000102595|ENST00000376747|UGGT2 18.721224879955976 0.3359999958351898 2 {NN|[MP]|[D{I|L}]|[EV]}WHKWD{I|L}{I|L} 9 5 + 66.691 0 0 5.4458 5.4458 91.24 0 0 0 21.751736484954378 52.790456128171996 21.751736484954378 28.76410021363376 0 1.1549471895720984 1.6989700043360187 0 0.7059771852360797 {NN|[MP]|[D{I|L}]|[EV]}WHKWD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}WHK{NN|[MP]|[D{I|L}]|[EV]}W{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{M(Oxidation (M))|F}{I|L}{I|L};[{I|L}T]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{M(Oxidation (M))|F}{I|L}{I|L};{[TV]|[{I|L}S]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L}{M(Oxidation (M))|F}{I|L};[{I|L}T]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}T{I|L}{M(Oxidation (M))|F}{I|L} 5.4458;3.097;2.3844;1.9401;1.4647;1.0204 -;-;-;-;-;- 234 NaN NaN 157054.3 NaN 16147 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20144 82.767 NaN 416770 35 0 62416 0.262 + 29857 VFAGVFNTF 9 82 501.25832183753266 1000.5020907418653 2 501.2704772949219 MULTI HCD FTMS 0 0 0 20141 9066.8486328125 0.04579166974757296 -6 0.17655181884765625 3 Unmodified _VFAGVFNTF_ ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant 12.531546534597751 0.2520865569484384 2 {I|L}DAV 4 7 15.037 0 0 1.503 0 0 131.07115287180517 468.19123254947505 599.2623854212802 0 0 0 0 0 0 0 0 0 {I|L}DAV 1.503 - 197 + NaN NaN 155643.7 NaN 16148 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20145 82.77 NaN 622720 35 0 74241 0.261 + 32037 VYPNWAIGL 9 88 516.7792487294746 1031.543944525749 2 516.2921752929688 MULTI HCD FTMS 0 0 0 20141 26976.43359375 0.3175171839870528 4 -0.10813140869140625 4 Unmodified _VYPNWAIGL_ ENSG00000131389|ENST00000622186|SLC6A6 50.855029805455786 0.030374663808198754 2 VH{I|L}VTN 6 8 36.235 0 0 3.5127 0 0 350.15867812324376 0 350.15867812324376 0 -0.2411488732800109 -0.2411488732800109 0 0 0 0 0.3494850021680094 0 VH{I|L}VTN 3.5127 - 1120 NaN NaN 177619.6 NaN 16149 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20146 82.774 NaN 426910 35 0 201180 0.261 + 6591 FPLHLPLEL 9 60 539.818435404094 1077.6223178749879 2 540.3302612304688 MULTI HCD FTMS 0 0 0 20141 9620.1201171875 0.04924796663101577 10 -0.275421142578125 5 Unmodified _FPLHLPLEL_ ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6|MADD 16.942295170755138 0.21397866736869717 2 PEH[{I|L}P]E{I|L} 7 3 31.704 0 0 2.942 0 0 244.17776686836095 0 244.17776686836095 0 16.219618294430926 0 0 0 0.4247425010840047 0 0.28872548999643577 0 PEH[{I|L}P]E{I|L} 2.942 - 60 NaN NaN 150219.5 NaN 16150 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20147 82.777 NaN 517690 35 0 47431 0.261 -1 0 92 566.2980512400009 1130.5815495468016 2 566.2979125976562 MULTI HCD FTMS 0 0 0 20141 160656.8125 0.4497066420152595 88 -1.9023513793945312 6 NaN NaN 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 -1 [YK] + + 42.267 3.7236 1.2789 3.7386 3.7386 60.67 0 0 0 0 7.813572109354752 0 0 0 2.2302046884880937 0 0 0 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.7386 - 1465 + NaN NaN 168511.1 NaN 16151 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20148 82.78 NaN 239630 35 0 46391 0.261 + 16958 LYIAVQAVL 9 39 495.3051757810587 988.5957986289175 2 495.3052673339844 MULTI HCD FTMS 0 0 0 20141 19858.052734375 0.1494828765431518 -4 0.1142578125 7 Unmodified _LYIAVQAVL_ ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3;ENSG00000133627|ENST00000256001|ACTR3B;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B 48.345845343767074 0.03388484103555672 2 AVQAV{I|L} 6 3 59.245 0 0 5.9929 0 0 389.23118788886876 0 389.23118788886876 0 54.64123782136497 0 0 0 2.3494850021680094 0 0 0 + AVQAV{I|L} 5.9929 + + 71 NaN NaN 128579 NaN 16152 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20149 82.783 NaN 156210 35 0 23466 0.261 + 6477 FPIPEEYTF 9 51 571.7741958671687 1141.5338388011373 2 571.7733154296875 MULTI HCD FTMS 0 0 0 20141 48601.98828125 0.09471070540390406 23 -0.6460418701171875 8 Unmodified _FPIPEEYTF_ ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF;nc|ENSG00000153187|Q00839-2|HNRNPU 15.847184025352803 0.2234401846867398 2 {I|L}NT{M(Oxidation (M))|F} 4 6 26.242 0 0 2.2989 0 0 648.2809223966436 0 648.2809223966436 0 19.252509456924827 0 0 0 0.805462187404089 0 0.3494850021680094 0 {I|L}NT{M(Oxidation (M))|F} 2.2989 - 66 + NaN NaN 107817.3 NaN 16153 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20150 82.787 NaN 279150 35 0 36449 0.261 + -1 SLYPANYCC 9 59 574.2312068994768 1146.4478608657535 2 574.2313842773438 MULTI HCD FTMS 0 0 0 20141 47415.203125 0.11636946287188248 11 -0.301605224609375 9 2 Carbamidomethyl (C) _SLYPANYC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000143776|ENST00000366766|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-4|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-5|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA;REV__nc|ENSG00000143776|Q5VT25|CDC42BPA 7.289230182591677 0.29575926068275815 2 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[TP]{M(Oxidation (M))|F} 8 -1 27.172 0 0 2.3701 0 0 165.97668327758294 0 165.97668327758294 0 17.976146931408294 0 0 0 1 0 0.3807196863200844 0 {I|L}N{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[TP]{M(Oxidation (M))|F} 2.3701 - 83 + NaN NaN 125052.9 NaN 16154 3994 20141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20152 82.792 NaN 1892900 35 0 87945 0.326 + 3606 EKLKQQGKS 9 115 523.3037994738958 1044.5930460145914 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20151 2001548.5 0.9035480725922229 -1 0.03277587890625 1 Unmodified _EKLKQQGKS_ ATAD5|p.E1812Q|1|0.15|ENSG00000176208|chr17:30894700-30894700|G/C|missense_variant 9.38312468134398 0.279288223203164 2 Q 1 8 8.8515 0 0 0.84737 0 0 546.3254341162848 367.1971919588272 913.5226260751119 0 0 0 0 0 0.4247425010840047 0 0 0 + Q 0.84737 + + 80 + NaN NaN 379991.4 NaN 16155 3995 20151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20153 82.796 NaN 309410 35 0 40909 0.261 + -1 YVIMYDEA 8 68 510.2231097550899 1018.4316665769799 2 510.222900390625 MULTI HCD FTMS 0 0 0 20151 218264.703125 0.7717272609649101 6 -0.16058349609375 2 Oxidation (M) _YVIM(Oxidation (M))YDEA_ REV__ENSG00000106772|ENST00000376718|PRUNE2;REV__ENSG00000167654|ENST00000450849|ATCAY;REV__nc|ENSG00000106772|Q8WUY3-2|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-3|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2;REV__nc|ENSG00000106772|Q8WUY3-5|PRUNE2;REV__nc|ENSG00000167654|Q86WG3-3|ATCAY 2.8892196856762586 0.5377058178582064 2 {I|L}V{M(Oxidation (M))|F} 3 -1 11.682 0 0 1.1471 0 0 129.9532863052986 526.2657564752561 656.2190427805547 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.1471 - 68 + NaN NaN 133327.6 NaN 16156 3995 20151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20154 82.8 NaN 477390 35 0 55642 0.261 + 11667 IYVQFDNGQL 10 70 598.8036171680374 NaN 0 598.79248046875 PEAK HCD FTMS 0 0 0 20151 10510.7998046875 0.19935003317975394 4 -0.1081695556640625 3 Unmodified _IYVQFDNGQL_ REV__ENST00000534564.5_1_11:85975200-85975380:+|nuORF 17.11289562659939 0.30402175129113823 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}D 6 -1 15.01 0 0 1.2555 0 0 131.11932250860565 279.1134127252563 410.23273523386194 0 0 0 0 0 0 0 0.3494850021680094 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}D 1.2555 - 417 + NaN NaN 159632.1 NaN 16157 3995 20151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20155 82.803 NaN 212450 35 0 25265 0.261 -1 IYMDTLNIF 9 62 573.2811960784773 1144.5478392237544 2 573.2815551757812 MULTI HCD FTMS 0 0 0 20151 53093.73046875 0.06222116284254795 30 -0.8427352905273438 4 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ ENSG00000165678|ENST00000372134|GHITM 37.97399986684836 0.07464525285885698 2 {I|L}N{I|L}{M(Oxidation (M))|F} 4 -1 41.019 0 0 3.5838 0 0 639.2569447248062 0 639.2569447248062 0 34.02880645020623 0 0 0 1.274227503252014 0 0 0.3494850021680094 {I|L}N{I|L}{M(Oxidation (M))|F} 3.5838 + + 185 NaN NaN 118466 NaN 16158 3995 20151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20156 82.806 NaN 116320 35 0 16715 0.261 + 24277 RYFLPPYTF 9 43 602.3135369074099 NaN 0 602.314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 18.1463463914782 0.1998403495282098 2 T 1 8 11.99 0 0 0.99697 0 0 165.07920362077908 933.4610061021704 1098.5402097229494 0 0 0 0 0 0.5 0 0 0 + T 0.99697 + + 10 + NaN NaN 102459.8 NaN 16159 3995 20151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20157 82.81 NaN 230850 35 0 22436 0.261 + 2499 DSFSALQVLLR 11 66 624.8510827178412 1247.6876125024824 2 624.8505859375 MULTI HCD FTMS 0 0 0 20151 97390.78125 0.6638065415457775 -3 0.0918731689453125 6 Unmodified _DSFSALQVLLR_ ENST00000541916.5_1_13:49649476-49688811:+|nuORF 53.4695610476455 0.06717086974850765 2 {[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}SA[Q{I|L}]V{I|L}{I|L}R 11 0 + 55.023 0 0 4.41 4.41 87.18 0 0 0 35.28592308654463 9.589932326668524 9.589932326668524 10.607898329531373 0 2.4802046884880937 0 0 0 + + {[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}SA[Q{I|L}]V{I|L}{I|L}R;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}W[C(Carbamidomethyl (C))K]{I|L}{I|L}R 4.41;3.5598 +;- + 158 + NaN NaN 132094 NaN 16160 3995 20151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20159 82.814 NaN 3577100 35 0 432320 0.327 + 15170 LMSLIINTF 9 104 534.2939490319458 1066.5733451306915 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20158 2444672.5 0.754896561456426 6 -0.1673583984375 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 206.74871869215147 9.242385646021313E-18 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 93.387 0 0 8.7558 8.7558 95.414 0 0 0 4.762036441594191 22.034021960761265 4.762036441594191 15.955612550363796 0 2.6549471895720984 0 2.103917193908117 0.6747425010840047 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}S{M(Oxidation (M))|F}{I|L} 8.7558;7.2599;5.6063;5.3498;5.2481;5.2069;5.1943;4.4666;4.1748;3.8418 +;-;-;-;-;-;-;-;-;- + 1794 NaN NaN 646129.4 NaN 16161 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20160 82.819 NaN 2034100 35 0 218700 0.261 + 17910 MILELDPTF 9 91 547.7754196984221 1093.536286463644 2 547.7756958007812 MULTI HCD FTMS 0 0 0 20158 1370261 0.2285727392185719 14 -0.403533935546875 2 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 102.91 0 0 9.4104 9.4104 91.709 0 0 0 6.394819529390773 6.394819529390773 6.394819529390773 6.394819529390773 0 2.930884548956689 2 1.329689690656103 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[{M(Oxidation (M))|F}T]P;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}YP;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}E{I|L}{I|L}D[{M(Oxidation (M))|F}T]P 9.4104;8.8256;8.4464;6.5019;6.2991;6.292;6.0891;6.0669;5.864;5.538 +;-;-;-;-;-;-;-;-;- + 3319 NaN NaN 412549.1 NaN 16162 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20161 82.823 NaN 297780 35 0 19768 0.261 + 34733 YPVQQDYFG 9 57 558.7556460990069 NaN 0 558.7670288085938 PEAK HCD FTMS 0 0 0 20158 12595.2685546875 0.9775112363101641 -1 0.02281951904296875 3 Unmodified _YPVQQDYFG_ REV__ENSG00000006468|ENST00000430479|ETV1;REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF;REV__ENST00000483075.1_1_7:14014577-14028701:-|nuORF;REV__nc|ENSG00000006468|P50549-2|ETV1;REV__nc|ENSG00000006468|P50549-3|ETV1 13.50788311687929 0.22978952576613207 2 {I|L}EEVGY 6 -1 39.373 0 0 3.5297 0 0 260.098698548336 162.05593286685783 422.1546314151939 0 0 0 0 0 0.5 0 0.7742275032520141 0 {I|L}EEVGY 3.5297 - 242 + NaN NaN 138241.2 NaN 16163 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20162 82.826 NaN 269600 35 0 23107 0.261 + 28906 TWFTAGAKLLF 11 60 627.8475655601902 1253.6805781871803 2 627.8480834960938 MULTI HCD FTMS 0 0 0 20158 191450.390625 0.13986322224810585 28 -0.7936553955078125 4 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 62.86856922530385 0.02857475510615551 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 78.486 0 0 6.2604 6.2604 88.154 0 0 0 7.269987279362624 73.88148496640703 7.269987279362624 9.164539485499247 0 2.6549471895720984 0 1.1861818737241734 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F} 6.2604;5.5294 -;+ + 205 NaN NaN 141088.6 NaN 16164 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20163 82.829 NaN 195470 35 0 30076 0.261 + 24469 RYLDLILNDF 10 59 641.345264048877 1280.6759751645538 2 641.345458984375 MULTI HCD FTMS 0 0 0 20158 61498.52734375 0.11497802716117127 7 -0.19693756103515625 5 Unmodified _RYLDLILNDF_ ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;nc|ENSG00000065427|Q15046-2|KARS1 29.28111348798908 0.23842404446709042 2 {I|L}{I|L}ND{M(Oxidation (M))|F} 5 5 56.013 0 0 4.3737 0 0 660.3598499982437 0 660.3598499982437 0 45.55584714187489 0 0 0 1.805462187404089 0 0 0 + {I|L}{I|L}ND{M(Oxidation (M))|F} 4.3737 + + 62 NaN NaN 114510.6 NaN 16165 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20164 82.832 NaN 219180 35 0 58603 0.264 + 30816 VPVNTLQN 8 47 442.7447894887559 883.4750260443118 2 442.7449035644531 MULTI HCD FTMS 0 0 0 20158 72337.125 1 0 0 6 Unmodified _VPVNTLQN_ ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51624427-51671126:+|nuORF;RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant;RAD54L2|p.G419Vfs*17|1|0.43|ENSG00000164080|chr3:51635705-51635705|G/-|frameshift_variant;RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant 7.910154910731844 0.5302565402355366 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 3 6 16.655 0 0 1.8852 0 0 0 507.24959814808057 507.24959814808057 3.5565186970487197 0 0 0 0 0 1.2218487496163564 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L} 1.8852 - 41 NaN NaN 139030.9 NaN 16166 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20165 82.836 NaN 122900 35 0 10166 0.261 + 26036 SPEESPFGDLL 11 46 595.7824509149978 1189.5503488967954 2 595.7828979492188 MULTI HCD FTMS 0 0 0 20158 54141.09375 0.8119384141257784 1 -0.03293609619140625 7 Unmodified _SPEESPFGDLL_ ENSG00000101193|ENST00000266069|GID8 15.248480904072842 0.3242218977034194 2 S[DG]{I|L}{I|L} 5 6 24.208 0 0 2.0351 0 0 686.3068104474625 0 686.3068104474625 0 7.7815125038364386 0 0 0 0.5 0 0 0 S[DG]{I|L}{I|L} 2.0351 - 13 NaN NaN 116478.7 NaN 16167 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20166 82.839 NaN 174800 35 0 9092.5 0.261 + -1 RGLVCWCLL 9 62 588.8072257857235 NaN 0 588.8057861328125 PEAK HCD FTMS 0 0 0 20158 29694.423828125 0.6650567734192596 1 -0.03293609619140625 8 2 Carbamidomethyl (C) _RGLVC(Carbamidomethyl (C))WC(Carbamidomethyl (C))LL_ REV__nc|ENSG00000092068|Q9UHI5-4|SLC7A8 7.910154910731844 0.25691533546754686 2 {I|L} 1 -1 11.99 0 0 1.0199 0 0 131.09307336318903 928.4022921197874 1059.4953654829765 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0199 + + 45 + NaN NaN 128869.5 NaN 16168 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20167 82.842 NaN 129710 35 0 9586.4 0.264 + 23232 RGAPPPRG 8 50 404.2330976864327 806.4516424396654 2 404.2336120605469 MULTI HCD FTMS 0 0 0 20158 79623.3359375 0.6056251463287962 -5 0.1436309814453125 9 Unmodified _RGAPPPRG_ ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR 4.75600775471527 0.5349361699807423 2 R 1 7 6.0168 0 0 0.74608 0 0 282.1687434277466 365.15964685611567 647.3283902838623 0 0 0 0 0 0.3252574989159953 0 0 0 + R 0.74608 + + 11 + NaN NaN 117591.7 NaN 16169 3996 20158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20169 82.847 NaN 963970 35 0 53301 0.327 -1 0 102 531.8170833266972 1061.6196137201944 2 531.8174438476562 MULTI HCD FTMS 0 0 0 20168 960029.25 0.7702752998390795 1 -0.01959991455078125 1 NaN NaN 2 D 1 -1 11.237 0 0 1.0585 0 0 61.05388128392594 882.4921898000654 943.5460710839914 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 D 1.0585 - 109 + NaN NaN 240148.2 NaN 16170 3997 20168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20170 82.852 NaN 217170 35 0 16058 0.262 + 8276 GVAVHNVR 8 55 426.24596776695273 850.4773826007055 2 426.2460021972656 MULTI HCD FTMS 0 0 0 20168 202610.484375 0.12167677009032277 8 -0.21307373046875 2 Unmodified _GVAVHNVR_ KLHL32|p.G547V|1|0.08|ENSG00000186231|chr6:97132686-97132686|G/T|missense_variant 2.577480529830294 0.5381683276125971 2 P 1 8 5.4846 0 0 0.64488 0 0 630.3462771092977 120.0586184137328 750.4048955230305 0 0 0 0 0 0.5 0 0 0 P 0.64488 - 19 + NaN NaN 116578.7 NaN 16171 3997 20168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20171 82.855 NaN 110370 35 0 13011 0.261 + 18136 MPDFDLNL 8 36 482.72599311327605 963.4374332933521 2 482.7254943847656 MULTI HCD FTMS 0 0 0 20168 55972.83984375 0.6112499916816695 -1 0.03293609619140625 3 Unmodified _MPDFDLNL_ ENSG00000124942|ENST00000378024|AHNAK 21.74664581756881 0.4337896562907935 2 D{I|L}N{I|L} 4 4 35.433 0 0 3.6778 0 0 490.18956191230626 0 490.18956191230626 0 21.453650195120844 0 0 0 0.4247425010840047 0 0 0.4247425010840047 + D{I|L}N{I|L} 3.6778 + + 30 NaN NaN 89439.6 NaN 16172 3997 20168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20172 82.859 NaN 98102 35 0 10565 0.261 + 2252 DLFYSFWER 9 47 631.7955373128248 1261.5765216924494 2 631.795654296875 MULTI HCD FTMS 0 0 0 20168 43987.49609375 0.8826665140791389 1 -0.01959991455078125 4 Unmodified _DLFYSFWER_ ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 15.248480904072842 0.22861284681709862 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}Y 4 5 44.693 0 0 3.5426 0 0 0 720.3122652643186 720.3122652643186 37.70303756120384 0 0 0 0 0.8494850021680094 2 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}Y 3.5426 + + 107 + NaN NaN 101786.3 NaN 16173 3997 20168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20173 82.862 NaN 144510 35 0 26837 0.264 + -1 KIMEEGMWW 9 38 409.18334596260365 NaN 0 409.1830139160156 PEAK HCD FTMS 0 0 0 20168 35617.36328125 0.6932343610201975 -40 1.1207351684570312 5 Oxidation (M) _KIM(Oxidation (M))EEGMWW_ REV__ENST00000401694.4_1_7:155403996-155436262:-|nuORF;REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF;REV__ENST00000474963.1_1_7:155436154-155436262:-|nuORF 0.9622753412299311 0.2905837902567025 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111298.6 NaN 16174 3997 20168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20175 82.867 NaN 1358700 35 0 87416 0.327 -1 0 129 545.317042992181 1088.6195330511619 2 545.3169555664062 MULTI HCD FTMS 0 0 0 20174 760509.25 0.8441533448891951 6 -0.16728973388671875 1 NaN NaN 2 ESP{M(Oxidation (M))|F}{I|L}GE{M(Oxidation (M))|F} 8 -1 41.072 0 0 3.7728 0 0 164.21531049432434 0 164.21531049432434 0 23.125065045782424 0 0 0 0 0 1.3550083952587297 0 ESP{M(Oxidation (M))|F}{I|L}GE{M(Oxidation (M))|F} 3.7728 - 2132 + NaN NaN 309594.1 NaN 16175 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20176 82.871 NaN 963270 35 0 117210 0.261 + 26723 SYDPLRIYLF 10 76 643.8427877609231 1285.671022588646 2 643.8428955078125 MULTI HCD FTMS 0 0 0 20174 626147 1 0 0 2 Unmodified _SYDPLRIYLF_ ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENST00000480929.1_1_2:219612227-219612548:+|nuORF 83.42873516780209 0.0016734765818451427 2 {[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R{I|L}Y{I|L}{M(Oxidation (M))|F} 10 2 + 88.677 0 0 6.8973 6.8973 89.052 0 0 0 8.762874945799766 16.53212513775344 8.762874945799766 8.762874945799766 0 2.4247425010840047 1.3979400086720375 1.5044321917401078 0 {[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R{I|L}Y{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D[{I|L}P]R{I|L}Y{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R{I|L}{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}D[{I|L}P]R{I|L}{I|L}Y{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}S[{I|L}P]R[Y{M(Oxidation (M))|F}]{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}D[{I|L}P]R[Y{M(Oxidation (M))|F}]{I|L}{I|L} 6.8973;6.2158;6.0159;5.3343;2.1705;1.4889 -;+;-;-;-;- + 289 NaN NaN 241022.7 NaN 16176 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20177 82.875 NaN 850260 35 0 104160 0.261 + 12880 KYFPYLVLL 9 94 578.3442991792316 1154.674045425263 2 578.3444213867188 MULTI HCD FTMS 0 0 0 20174 384635.78125 0.492529590362761 3 -0.08522796630859375 3 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 48.345845343767074 0.03388484103555672 2 [YK]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}V{I|L}{I|L} 9 0 + 41.785 0 0 3.6188 3.6188 89.501 0 0 0 2.0940130724323325 16.65961249221447 2.0940130724323325 41.78540037861972 0 1.9143943297944483 0 0 0 + + [YK]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}V{I|L}{I|L} 3.6188 + + 727 NaN NaN 222974 NaN 16177 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20178 82.878 NaN 876830 35 0 164990 0.261 + 17329 LYPSIIQEF 9 72 555.2973048987329 1108.5800568642658 2 555.2974853515625 MULTI HCD FTMS 0 0 0 20174 406966 0.8988283610665478 -3 0.07535552978515625 4 Unmodified _LYPSIIQEF_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 86.33184430468982 0.004622086694044132 2 [Y{I|L}][PS]{I|L}{I|L}QE{M(Oxidation (M))|F} 9 0 + 89.689 0 0 8.0905 8.0905 94.044 0 0 0 13.068109453757657 13.068109453757657 13.068109453757657 13.455612550363796 0 2.7302046884880937 1.3979400086720375 1.1307196863200843 0.4247425010840047 + + [Y{I|L}][PS]{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}QE{M(Oxidation (M))|F};[Y{I|L}]{I|L}[PS]{I|L}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][{I|L}A]{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}]{I|L}[PS]{I|L}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][{I|L}A]{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}EQ{I|L}{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}{I|L}[PS][YG] 8.0905;6.8767;6.257;6.1696;5.6979;5.4263;5.3389;4.8673;3.8131;3.3966 +;-;-;-;-;-;-;-;-;- + 359 + NaN NaN 229194.9 NaN 16178 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20179 82.882 NaN 475030 35 0 44973 0.261 + 3837 EPHNQRQLF 9 94 584.797603448553 1167.580653963906 2 585.8133544921875 MULTI HCD FTMS 0 0 0 20174 14132.0869140625 0.30949690568474403 7 -0.19347381591796875 5 Unmodified _EPHNQRQLF_ REV__CREBBP|p.R1347Q|1|0.27|ENSG00000005339|chr16:3740492-3740492|C/T|missense_variant 7.289230182591677 0.29575926068275815 2 E{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 5 -1 41.637 0 0 3.5661 0 0 0 514.2321871393186 514.2321871393186 22.428577892622748 0 0 0 0 0 0 0 0.9698565171985376 E{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 3.5661 - 1257 + NaN NaN 165604.2 NaN 16179 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20180 82.885 NaN 448810 35 0 29299 0.261 + 34891 YSFLDYVM 8 86 527.233662982494 1052.452773031788 2 527.2334594726562 MULTI HCD FTMS 0 0 0 20174 70952.1640625 0.4127393859507282 11 -0.32477569580078125 6 Oxidation (M) _YSFLDYVM(Oxidation (M))_ ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF 46.92087301778293 0.1468278106890452 2 [Y{M(Oxidation (M))|F}]{I|L}SDYV{M(Oxidation (M))|F} 8 2 + 62.682 0 0 5.9558 5.9558 86.649 0 0 0 3.4948500216800937 40.00630971391878 3.4948500216800937 6.7216751192405155 0 2 0 0.6307196863200843 0 [Y{M(Oxidation (M))|F}]{I|L}SDYV{M(Oxidation (M))|F};[YT]YD[{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}V]DYV{M(Oxidation (M))|F};[YT]Y[TP]YV{M(Oxidation (M))|F};[YT]Y{[YC]|[HE]}V{[QN]|[E{I|L}]|[KN]} 5.9558;5.3172;5.1026;4.4385;2.6556 -;-;-;-;- 250 NaN NaN 164486 NaN 16180 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20181 82.888 NaN 382160 35 0 40334 0.261 -1 FPTVVIYVM 9 87 542.7911424624269 1083.5677319916538 2 542.8079223632812 MULTI HCD FTMS 0 0 0 20174 49147.5703125 0.09153405755593148 30 -0.8493270874023438 7 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.21397866736869717 2 YV{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.6632 0 0 656.39046512265 0 656.39046512265 0 26.760912590556813 0 0 0 1.3494850021680094 0 0 0 YV{M(Oxidation (M))|F} 3.6632 + + 367 + NaN NaN 146926.7 NaN 16181 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20182 82.892 NaN 103580 35 0 34860 0.261 + 33775 YLFQPMYIH 9 39 606.3005053282976 NaN 0 606.2997436523438 PEAK HCD FTMS 0 0 0 20174 36159.41796875 0.8052452398917781 -3 0.07535552978515625 8 Unmodified _YLFQPMYIH_ REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|129|3|anti-sense 8.593279151180031 0.2536050107310812 2 Q 1 -1 11.237 0 0 0.92824 0 0 148.07115118218263 931.4138289801674 1079.48498016235 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.92824 + + 3 + NaN NaN 103500.2 NaN 16182 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20183 82.895 NaN 137880 35 0 16421 0.262 + 4975 FAVPLSSAAF 10 48 505.2713289766905 1008.528105020181 2 505.27203369140625 MULTI HCD FTMS 0 0 0 20174 26774.44921875 0.02958488782649363 12 -0.3509979248046875 9 Unmodified _FAVPLSSAAF_ REV__nc|ENSG00000205683|Q92784-3|DPF3 14.838274106304384 0.3723198072575719 2 AA{M(Oxidation (M))|F} 3 -1 37.065 0 0 3.6751 0 0 701.3749926513152 0 701.3749926513152 0 26.095756168365014 0 0 0 1.086696871556164 0 0 0 AA{M(Oxidation (M))|F} 3.6751 + + 14 NaN NaN 104025.1 NaN 16183 3998 20174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20185 82.9 NaN 1673400 35 0 468390 0.327 + 24194 RYFILPYVI 9 74 592.3474588953922 1182.6803648575842 2 592.3474731445312 MULTI HCD FTMS 0 0 0 20184 793839.25 0.7353442680048196 1 -0.022857666015625 1 Unmodified _RYFILPYVI_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 42.09456458481378 0.05572955244001856 2 [Y{M(Oxidation (M))|F}]R{I|L}{I|L}PYV{I|L} 9 2 + 48.012 0 0 4.0596 4.0596 84.374 0 0 0 0.3212904658563076 16.585390679490075 0.3212904658563076 8.023787536356572 0 1.992992819099939 0 0 0 [Y{M(Oxidation (M))|F}]R{I|L}{I|L}PYV{I|L};[Y{M(Oxidation (M))|F}]{I|L}R{I|L}PYV{I|L} 4.0596;3.3812 -;- 195 NaN NaN 342678.7 NaN 16184 3999 20184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20186 82.904 NaN 534320 35 0 107210 0.262 + 29858 VFAGVFNTF 9 69 501.25832183753266 1000.5020907418653 2 501.25836181640625 MULTI HCD FTMS 0 0 0 20184 176476.265625 0.8912846349435773 -1 0.03281402587890625 2 Unmodified _VFAGVFNTF_ ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant 54.773552608820026 0.024892918755467567 2 {I|L}[QT]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 7 5 45.348 0 0 4.5325 0 0 131.07215602932303 0 131.07215602932303 0 30.910838337099165 0 0 0 1.579689690656103 0 0.6307196863200843 0.4247425010840047 {I|L}[QT]{M(Oxidation (M))|F}NT{M(Oxidation (M))|F} 4.5325 - 515 + NaN NaN 168481.9 NaN 16185 3999 20184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20187 82.908 NaN 129140 35 0 26701 0.261 + 22487 QRPGRLAA 8 50 434.7592026191575 867.5038523051151 2 434.7591857910156 MULTI HCD FTMS 0 0 0 20184 75208.6640625 0.06937314271522366 12 -0.3444366455078125 3 Unmodified _QRPGRLAA_ REV__ENST00000357081.7_2_9:88327462-88356793:-|nuORF;REV__nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 2.302733041254933 0.5385759549224092 2 {[{M(Oxidation (M))|F}H]|[RQ]}P 3 -1 0.94212 0 0 0.1086 0 0 0 483.2688418893526 483.2688418893526 0.8534811358448752 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}P 0.1086 + + 5 NaN NaN 121535.8 NaN 16186 3999 20184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20188 82.911 NaN 291170 35 0 37083 0.261 -1 0 54 562.3433075800444 1122.6720622268888 2 562.3435668945312 MULTI HCD FTMS 0 0 0 20184 71166.390625 0.5098023347948047 12 -0.3444366455078125 4 NaN NaN 2 T{I|L}Y{[CP]|[EA]}{I|L}T{M(Oxidation (M))|F} 8 -1 33.621 0 0 2.9947 0 0 166.20450359401963 0 166.20450359401963 0 9.439425527995127 0 0 0 0 0 0 0 T{I|L}Y{[CP]|[EA]}{I|L}T{M(Oxidation (M))|F} 2.9947 - 163 + NaN NaN 159661.2 NaN 16187 3999 20184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20189 82.914 NaN 70083 35 0 4333.5 0.262 + 14646 LGGLVEVLL 9 51 456.79202743591014 NaN 0 456.7919006347656 PEAK HCD FTMS 0 0 0 20184 5145.31005859375 0.09112667582499878 1 -0.022857666015625 5 Unmodified _LGGLVEVLL_ ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant 7.910154910731844 0.25691533546754686 2 E 1 8 7.7423 0 0 0.84933 0 0 343.24712752631405 436.25840173892817 779.5055292652422 0 0 0 0 0 0.4247425010840047 0 0 0 + E 0.84933 + + 3 + NaN NaN 102768.6 NaN 16188 3999 20184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20190 82.918 NaN 193590 35 0 14416 0.261 + 20963 PLGKLIKKG 9 56 477.32903712336395 952.6435213135279 2 477.3287048339844 MULTI HCD FTMS 0 0 0 20184 9274.8076171875 0.14640913421039634 3 -0.08200836181640625 6 Unmodified _PLGKLIKKG_ ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1 0.5247636613948944 0.34703895399870666 2 C(Carbamidomethyl (C)) 1 9 6.9897 0 0 0.73372 0 0 560.4880276421724 229.09797083072502 789.5859984728974 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.73372 - 21 + NaN NaN 119493.4 NaN 16189 3999 20184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20192 82.923 NaN 1727200 35 0 84126 0.327 + 23890 RSSKQLVDI 9 101 523.3037994738958 1044.5930460145914 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20191 1900772.5 0.8580553150779514 4 -0.1116180419921875 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 2 Q 1 8 10.841 0 0 1.0378 0 0 502.299451049071 411.2232356121078 913.5226866611788 0 0 0 0 0 0.7742275032520141 0 0 0 + Q 1.0378 + + 33 + NaN NaN 350535.7 NaN 16190 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20193 82.927 NaN 469470 35 0 69554 0.261 + -1 EMGRPLVTL 9 62 516.2813768724029 NaN 0 516.2922973632812 PEAK HCD FTMS 0 0 0 20191 9140.693359375 0.29856238819544184 -1 0.022857666015625 2 Oxidation (M) _EM(Oxidation (M))GRPLVTL_ REV__ENSG00000091622|ENST00000262483|PITPNM3;REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3;REV__nc|ENSG00000091622|Q9BZ71-3|PITPNM3 16.942295170755138 0.2079222001251384 2 TV{I|L}E 4 -1 22.735 0 0 2.2061 0 0 131.07293081770575 454.2098482721313 585.282779089837 0 0 0 0 0 0 0 0.3807196863200844 0 TV{I|L}E 2.2061 - 113 + NaN NaN 162647.6 NaN 16191 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20194 82.931 NaN 340580 35 0 152120 0.261 + 23799 RRPRPREL 8 47 540.3303828068025 1078.646212680405 2 540.3302612304688 MULTI HCD FTMS 0 0 0 20191 89208.03125 0.3098619022162401 13 -0.373992919921875 3 Unmodified _RRPRPREL_ ENST00000553142.5_1_12:58021477-58021885:-|nuORF 2.577480529830294 0.5381683276125971 2 E{M(Oxidation (M))|F} 2 7 10.969 0 0 1.0169 0 0 130.2570047720049 669.2570894830686 799.5140942550736 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 1.0169 - 17 + NaN NaN 142708.5 NaN 16192 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20195 82.934 NaN 695240 35 0 54841 0.261 -1 0 95 566.2980512400009 1130.5815495468016 2 566.2980346679688 MULTI HCD FTMS 0 0 0 20191 89668.0234375 0.2509965502783999 94 -1.9633560180664062 4 NaN NaN 2 [Y{I|L}][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 8 -1 43.236 0 0 3.8242 0 0 0 162.0586852489952 162.0586852489952 18.501254915507623 0 0 0 0 2.1747425010840047 2 0 0.2614393726401688 [Y{I|L}][QA]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V 3.8242 - 1596 NaN NaN 193998.2 NaN 16193 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20196 82.937 NaN 342410 35 0 61271 0.261 + 7534 FYADHPFIFL 10 60 635.3189856520074 1268.6234183708148 2 635.31884765625 MULTI HCD FTMS 0 0 0 20191 128200.34375 0.33808394503612366 -5 0.1310272216796875 5 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 43.85829265575387 0.11192494793849486 2 {I|L}{M(Oxidation (M))|F}{I|L} 3 7 31.198 0 0 2.4592 0 0 877.3692494123062 0 877.3692494123062 0 16.49288766643714 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L} 2.4592 + + 41 NaN NaN 149911.9 NaN 16194 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20197 82.941 NaN 119400 35 0 11930 0.263 + 33623 YIVALQGLI 9 35 495.3051757810587 988.5957986289175 2 495.3049621582031 MULTI HCD FTMS 0 0 0 20191 22946.32421875 0.1727300554687794 2 -0.05915069580078125 6 Unmodified _YIVALQGLI_ REV__ENSG00000064270|ENST00000262429|ATP2C2;REV__ENST00000567222.1_1_16:84493993-84497335:+|nuORF;REV__nc|ENSG00000064270|O75185-2|ATP2C2;REV__nc|ENSG00000064270|O75185-3|ATP2C2 11.640296217721598 0.25978676193971967 2 Q{[VA]|[{I|L}G]}{I|L} 4 -1 23.188 0 0 2.3455 0 0 559.3371955228448 0 559.3371955228448 0 6.197887582883936 0 0 0 1 0 0 0 Q{[VA]|[{I|L}G]}{I|L} 2.3455 + + 15 NaN NaN 126810.2 NaN 16195 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20198 82.944 NaN 134490 35 0 13707 0.261 + 33757 YLFGALQSI 9 47 506.2793275829397 1010.5441022326794 2 506.2799072265625 MULTI HCD FTMS 0 0 0 20191 17584.953125 0.4447200418546279 -6 0.1638031005859375 7 Unmodified _YLFGALQSI_ ENST00000588355.1_1_18:31804054-31804846:-|nuORF;ENST00000590846.1_1_18:31804054-31804756:-|nuORF 25.399314129420986 0.14091189997036632 2 [Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}QS{I|L} 8 2 + 44.385 0 0 4.3922 4.3922 86.787 0 0 0 0.45757490560674796 33.92790030352131 0.45757490560674796 9.262137858390808 0 1.5 0 0 0 [Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}QS{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[AG]S{I|L};[Y{I|L}]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}[KS]{I|L} 4.3922;3.4757;2.3398 -;-;- 93 NaN NaN 132425.1 NaN 16196 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20199 82.947 NaN 161400 35 0 12424 0.261 + -1 LYGCYSQWL 9 62 595.2683382408209 1188.5221235484416 2 595.2677612304688 MULTI HCD FTMS 0 0 0 20191 24040.11328125 0.19517539519862875 -12 0.34035491943359375 8 Carbamidomethyl (C) _LYGC(Carbamidomethyl (C))YSQWL_ REV__ENSG00000137414|ENST00000259963|FAM8A1 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 19.464 0 0 1.6377 0 0 944.3400135724625 0 944.3400135724625 0 12.474250108400469 0 0 0 0 0 0 0 {I|L}{I|L} 1.6377 - 28 NaN NaN 139942.8 NaN 16197 4000 20191 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20201 82.952 NaN 2130700 35 0 242510 0.327 + 15171 LMSLIINTF 9 103 534.2939490319458 1066.5733451306915 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20200 1334094.5 0.41195839144422414 11 -0.31817626953125 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 174.72732175369546 1.2540765405420886E-09 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 91.587 0 0 8.587 8.587 90.627 0 0 0 4.480071641894199 24.340905095085205 4.480071641894199 5.823872065994564 0 2.3494850021680094 0 2.2900990676322905 0.6139829889124311 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}TQV{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}S{I|L}KS{M(Oxidation (M))|F}{I|L} 8.587;8.041;7.148;6.602;5.461;5.0311;4.9881;4.915;4.7148;4.4851 +;-;-;-;-;-;-;-;-;- + 1847 NaN NaN 411750.2 NaN 16198 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20202 82.957 NaN 333870 35 0 27798 0.261 + 34529 YPHFPEFFL 9 71 598.7924270720684 1195.5703012109368 2 598.7921752929688 MULTI HCD FTMS 0 0 0 20200 97665.8359375 0.44333626379394053 3 -0.082061767578125 2 Unmodified _YPHFPEFFL_ ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF 26.88365393820708 0.12808753336095696 2 [Y{I|L}][HM][EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 2 + 43.833 0 0 3.6663 3.6663 84.085 0 0 0 6.582940143822071 25.740312677277185 6.582940143822071 8.365743447727631 0 1.3252574989159953 1.6989700043360187 0 0 [Y{I|L}][HM][EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QT]KCY{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QT]KC{M(Oxidation (M))|F}Y{I|L};[Y{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Y{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QT]K{M(Oxidation (M))|F}CY{I|L};[Y{I|L}][HM][EP]{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]};[MN][W{I|L}][EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3.6663;2.9666;2.8918;2.375;2.368;2.0948;1.9199;1.6798;1.0483;0.90527 -;-;-;-;-;-;-;-;-;- 376 NaN NaN 157770.1 NaN 16199 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20203 82.96 NaN 130090 35 0 13145 0.261 + 2500 DSFSALQVLLR 11 54 624.8510827178412 1247.6876125024824 2 624.8511352539062 MULTI HCD FTMS 0 0 0 20200 90495.6640625 0.616810061642427 3 -0.082061767578125 3 Unmodified _DSFSALQVLLR_ ENST00000541916.5_1_13:49649476-49688811:+|nuORF 42.835182525472874 0.11869059338859039 2 V{I|L}{I|L}R 4 7 43.686 0 0 3.5013 0 0 748.3376332013687 0 748.3376332013687 0 20.93826579239625 0 0 0 1.3252574989159953 0 0 0 + V{I|L}{I|L}R 3.5013 + + 46 NaN NaN 105153.3 NaN 16200 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20204 82.964 NaN 280970 35 0 46377 0.261 + 11231 IYLDLPQNF 9 67 561.7936789404121 NaN 0 561.7791748046875 PEAK HCD FTMS 0 0 0 20200 8381.62109375 0.6398192149426477 1 -0.02959442138671875 4 Unmodified _IYLDLPQNF_ ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF 18.13498045792455 0.19991664011725976 2 EY{[CP]|[EA]}{I|L}T 6 7 14.988 0 0 1.3363 0 0 250.18669439077445 162.05661951236564 412.2433139031401 0 0 0 0 0 0.3807196863200844 0 0 0 EY{[CP]|[EA]}{I|L}T 1.3363 - 96 + NaN NaN 124841.1 NaN 16201 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20205 82.967 NaN 182360 35 0 49001 0.264 + 20768 PGNCSLLL 8 43 408.7183107858362 NaN 0 408.7183532714844 PEAK HCD FTMS 0 0 0 20200 41840.296875 0.7745484585416056 1 -0.02959442138671875 5 Unmodified _PGNCSLLL_ ENST00000480196.2_1_21:33705566-33706642:-|nuORF 5.760428011301431 0.38822285293237185 2 {I|L} 1 7 3.0989 0 0 0.38004 0 0 571.2440881470646 128.07160364322502 699.3156917902896 0 0 0 0 0 0 0 0 0 + {I|L} 0.38004 + + 3 + NaN NaN 112360.1 NaN 16202 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20206 82.97 NaN 146140 35 0 15357 0.261 + 30970 VRTEPDSLTW 10 57 602.3051600694349 1202.5957672056697 2 603.3052978515625 MULTI HCD FTMS 0 0 0 20200 34190.265625 0.09998596288700645 -16 0.448394775390625 6 Unmodified _VRTEPDSLTW_ REV__ENSG00000071127|ENST00000499869|WDR1;REV__ENST00000502962.5_1_4:10077004-10094774:-|nuORF;REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF;REV__nc|ENSG00000071127|O75083-3|WDR1 5.296884461304476 0.4472664531305844 2 E{I|L}N 3 -1 19.935 0 0 1.6577 0 0 129.09369949064768 714.3142183893186 843.4079178799664 0 0 0 0 0 0.25 0 0.4247425010840047 0 E{I|L}N 1.6577 - 73 + NaN NaN 111493.3 NaN 16203 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20207 82.974 NaN 135560 35 0 10012 0.262 + 7199 FSLSSSMLL 9 45 492.7569962142007 983.4994394952014 2 492.75738525390625 MULTI HCD FTMS 0 0 0 20200 49340.87109375 1 0 0 7 Unmodified _FSLSSSMLL_ ENST00000271690.12_1_1:150597354-150597492:-|nuORF 20.453626601364224 0.18364154288633264 2 {I|L}C{I|L} 3 7 36.198 0 0 3.6805 0 0 636.311105745905 0 636.311105745905 0 21.49288766643714 0 0 0 1 0 0 0 {I|L}C{I|L} 3.6805 - 95 NaN NaN 104024.3 NaN 16204 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20208 82.977 NaN 247990 35 0 12372 0.261 -1 0 67 527.282773152553 526.2754966859529 1 527.2833862304688 MULTI HCD FTMS 0 0 0 20200 27414.31640625 0.5967485075260786 6 -0.18053436279296875 8 NaN NaN 2 YV{M(Oxidation (M))|F} 3 -1 23.188 0 0 4.406 0 0 99.09888246421066 0 99.09888246421066 0 8.723637474483468 0 0 0 0 0 0 0 YV{M(Oxidation (M))|F} 4.406 - 34 + NaN NaN 127840.4 NaN 16205 4001 20200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20210 82.982 NaN 1541900 35 0 149620 0.327 + 27433 SYVGLVYMF 9 95 547.764695610018 1093.5148382868358 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20209 82370.5 1 0 0 1 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 56.541270873467816 0.02242000196051205 2 T{M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 8 7 72.416 0 0 6.6223 0 0 63.99065251754161 0 63.99065251754161 0 30.60739102249397 0 0 0 1.0941876774005248 0 2.205112052208703 0.3494850021680094 T{M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 6.6223 - 4583 + NaN NaN 315746.5 NaN 16206 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20211 82.986 NaN 1411200 35 0 127800 0.261 + 11548 IYSPLLFKYF 10 93 645.8603519813042 1289.7061510294084 2 645.8604125976562 MULTI HCD FTMS 0 0 0 20209 605148.75 0.8840935962889614 1 -0.02957916259765625 2 Unmodified _IYSPLLFKYF_ ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 160.6895995991744 8.96468530761412E-11 2 [Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 10 0 + 119.99 0 0 9.3036 9.3036 90.007 0 0 0 2.1874490592574745 2.1874490592574745 2.1874490592574745 2.1874490592574745 0 3.305462187404089 2 2.5030834337684316 0 + + [Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{I|L}YSP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}{I|L}KY{M(Oxidation (M))|F};{I|L}Y[TP]V{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}K{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}{I|L}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}K{M(Oxidation (M))|F}Y{I|L};{I|L}YSP[KQ]{I|L}P{I|L}[MT];{I|L}YSP{I|L}[KQ]P{I|L}[MT] 9.3036;9.134;8.4115;7.4385;7.4304;7.1318;6.2397;6.1804;6.1567;6.0795 +;+;-;-;-;-;-;-;-;- + 1635 NaN NaN 315438.9 NaN 16207 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20212 82.99 NaN 258630 35 0 20498 0.261 + 9631 HTPDRVRNLF 10 63 627.8366396832487 NaN 0 627.8480224609375 PEAK HCD FTMS 0 0 0 20209 11213.8271484375 1 0 0 3 Unmodified _HTPDRVRNLF_ ENSG00000242419|ENST00000306593|PCDHGC4;nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 12.240655878213236 0.32970798410958835 2 {I|L}{I|L}KQAT{M(Oxidation (M))|F} 7 9 33.642 0 0 2.6835 0 0 165.05635951537653 284.10349451236567 449.1598540277422 0 0 0 0 0 0.9247425010840047 0 1.0941876774005248 0 {I|L}{I|L}KQAT{M(Oxidation (M))|F} 2.6835 - 153 + NaN NaN 120737.7 NaN 16208 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20213 82.993 NaN 135980 35 0 8828.4 0.264 + 23001 RAGPRPGP 8 61 404.2330976864327 806.4516424396654 2 404.23291015625 MULTI HCD FTMS 0 0 0 20209 78917.4765625 0.6002562908012222 1 -0.02957916259765625 4 Unmodified _RAGPRPGP_ ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2;REV__ENST00000574741.1_1_17:45159638-45177554:-|nuORF 2.302733041254933 0.5385759549224092 2 {[{M(Oxidation (M))|F}H]|[RQ]}P 3 6 8.072 0 0 1.0009 0 0 0 422.2171813403092 422.2171813403092 0.2853716820872183 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}P 1.0009 - 10 NaN NaN 111384.1 NaN 16209 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20214 82.997 NaN 239130 35 0 13847 0.261 -1 LYPEERYM 8 69 558.7557747884059 NaN 0 558.7666625976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _LYPEERYM(Oxidation (M))_ ENSG00000214827|ENST00000369476|MTCP1 13.50788311687929 0.38822285293237185 2 Q{I|L}EEVGY 7 -1 34.685 0 0 3.1094 0 0 132.06048648911798 162.05568872623283 294.11617521535084 0 0 0 0 0 0.5 0 0.3494850021680094 0 Q{I|L}EEVGY 3.1094 - 543 + NaN NaN 126898.2 NaN 16210 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20215 83 NaN 538940 35 0 140140 0.261 + -1 NYILLMGLCF 10 66 622.3167529830527 NaN 0 622.3035278320312 PEAK HCD FTMS 0 0 0 20209 31720.28125 0.7160380458854181 3 -0.07865142822265625 6 Carbamidomethyl (C) _NYILLMGLC(Carbamidomethyl (C))F_ REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|7|1|sense;REV__SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|14|3|sense;REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|12|1|sense 14.838274106304384 0.3224471714378502 2 G{M(Oxidation (M))|F}SEN[VP]{I|L} 8 -1 26.363 0 0 2.1216 0 0 165.1029347579311 231.07734094791252 396.18027570584366 0 0 0 0 0 0 0 0 0.4247425010840047 G{M(Oxidation (M))|F}SEN[VP]{I|L} 2.1216 - 244 + NaN NaN 173530.9 NaN 16211 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20216 83.003 NaN 290270 35 0 38057 0.263 -1 SVMLELVAL 9 49 495.78016172419785 989.5457705151957 2 495.77911376953125 MULTI HCD FTMS 0 0 0 20209 74582.5625 0.12463886125974216 -6 0.1673583984375 7 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 44.40701690623563 0.04511410083598184 2 D{I|L}VA{I|L} 5 -1 58.203 0 0 5.8818 0 0 460.23301894355626 0 460.23301894355626 0 39.262814293390875 0 0 0 1.5 0 1.0451140161145327 0 D{I|L}VA{I|L} 5.8818 - 245 NaN NaN 126495.4 NaN 16212 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20217 83.007 NaN 143230 35 0 17994 0.261 + 10212 IGSIVSLTL 9 61 451.7813837628384 901.5482145924768 2 451.781494140625 MULTI HCD FTMS 0 0 0 20209 42359.26953125 0.6742408693575477 6 -0.17383575439453125 8 Unmodified _IGSIVSLTL_ ENST00000321250.12_1_8:29965226-29965448:+|nuORF 10.823927491677226 0.26684000660059787 2 M{I|L}S 3 7 14.425 0 0 1.6 0 0 101.10340365673308 466.2671371478573 567.3705408045904 0 0 0 0 0 0.4247425010840047 0 0 0 M{I|L}S 1.6 - 33 + NaN NaN 125366.4 NaN 16213 4002 20209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20219 83.011 NaN 812760 35 0 43190 0.327 -1 0 105 531.8170833266972 1061.6196137201944 2 531.8173217773438 MULTI HCD FTMS 0 0 0 20218 716336.6875 0.574749630544898 7 -0.20659637451171875 1 NaN NaN 2 Q 1 -1 6.9897 0 0 0.6584 0 0 563.3525353901605 367.1968008347413 930.5493362249017 0 0 0 0 0 0 0 0 0 Q 0.6584 - 145 + NaN NaN 205818.4 NaN 16214 4003 20218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20220 83.016 NaN 1601800 35 0 129770 0.261 + 5342 FFSPMLGEF 9 116 545.7497432565789 1089.4849335799577 2 545.7495727539062 MULTI HCD FTMS 0 0 0 20218 569556.6875 0.8925201095755173 1 -0.02288818359375 2 Oxidation (M) _FFSPM(Oxidation (M))LGEF_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 141.82661023413823 1.746659319327287E-05 2 ESP{M(Oxidation (M))|F}{I|L}GE{M(Oxidation (M))|F} 8 2 62.86 0 0 5.7697 0 0 165.08001415898906 0 165.08001415898906 0 49.53981781310522 0 0 0 1.4247425010840047 0 1.7703037561203845 0 ESP{M(Oxidation (M))|F}{I|L}GE{M(Oxidation (M))|F} 5.7697 - 1089 + NaN NaN 352611.7 NaN 16215 4003 20218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20221 83.019 NaN 1079500 35 0 140610 0.261 + 34117 YNRNRSHW 8 110 566.7752825194311 1131.5360121056622 2 566.7874755859375 MULTI HCD FTMS 0 0 0 20218 20748.923828125 0.5857059495572078 8 -0.23284912109375 3 Unmodified _YNRNRSHW_ REV__ENSG00000103544|ENST00000417362|VPS35L 15.847184025352803 0.47719562709667024 2 [Y{I|L}]N{I|L}YVTV 8 -1 51.776 0 0 4.5757 0 0 0 163.01384432211105 163.01384432211105 -0.22903564944515153 0 -0.22903564944515153 0 0 0 1.3010299956639813 0.28872548999643577 1.0752574989159953 [Y{I|L}]N{I|L}YVTV 4.5757 - 2285 NaN NaN 255067.2 NaN 16216 4003 20218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20222 83.023 NaN 121010 35 0 17362 0.262 + 18137 MPDFDLNL 8 38 482.72599311327605 963.4374332933521 2 482.7259826660156 MULTI HCD FTMS 0 0 0 20218 68778.859375 0.7510978063325445 5 -0.144256591796875 4 Unmodified _MPDFDLNL_ ENSG00000124942|ENST00000378024|AHNAK 11.640296217721598 0.50814828952472 2 {I|L}N{I|L} 3 5 30.445 0 0 3.1601 0 0 605.2163363290394 0 605.2163363290394 0 19.987737688117235 0 0 0 0.4247425010840047 0 0 0 + {I|L}N{I|L} 3.1601 + + 23 NaN NaN 109461.7 NaN 16217 4003 20218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20223 83.026 NaN 313000 35 0 42893 0.261 + 25143 SAIFPDVAL 9 41 466.75805454711207 931.5015561610242 2 466.7577819824219 MULTI HCD FTMS 0 0 0 20218 124755.8515625 0.7804716940280001 -2 0.059173583984375 5 Unmodified _SAIFPDVAL_ ENSG00000143499|ENST00000366957|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;nc|ENSG00000143499|Q9NRG4-2|SMYD2 41.8396318013385 0.056899836730939755 2 {M(Oxidation (M))|F}PDVA{I|L} 6 3 43.887 0 0 4.7115 0 0 271.1530934064469 0 271.1530934064469 0 33.429862658764264 0 0 0 1.6435078169319297 0 0.3807196863200844 0 + {M(Oxidation (M))|F}PDVA{I|L} 4.7115 + + 65 NaN NaN 131488.9 NaN 16218 4003 20218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20224 83.029 NaN 202750 35 0 19862 0.261 + -1 MHGCLSGADLL 11 62 595.2683382408209 1188.5221235484416 2 595.2664794921875 MULTI HCD FTMS 0 0 0 20218 76159.609375 0.6183199589800733 -9 0.252532958984375 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))HGC(Carbamidomethyl (C))LSGADLL_ REV__ENST00000430350.2_2_20:4667109-4679919:+|nuORF 8.745405648335112 0.3805662881914433 2 {I|L}{I|L} 2 -1 17.959 0 0 1.511 0 0 944.3369007794937 0 944.3369007794937 0 10 0 0 0 0 0 0 0 {I|L}{I|L} 1.511 + + 35 NaN NaN 130096.1 NaN 16219 4003 20218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20226 83.034 NaN 748980 35 0 50645 0.326 + -1 LFCRRRLF 8 93 584.3316094062001 1166.6486658792 2 584.822021484375 MULTI HCD FTMS 0 0 0 20225 12543.57421875 0.18140472678015768 6 -0.18370819091796875 1 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))RRRLF_ REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF;REV__nc|ENSG00000168874|Q96SQ7-2|ATOH8 14.581692164780916 0.48650662947107914 2 [YQ]TD{I|L}{I|L}R{I|L} 8 -1 62.538 0 0 5.3605 0 0 0 161.07790546040306 161.07790546040306 6.95464242640157 0 0 0 0 0 1.2218487496163564 2.2302046884880937 2.774227503252014 [YQ]TD{I|L}{I|L}R{I|L} 5.3605 - 1507 NaN NaN 221623.9 NaN 16220 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20227 83.039 NaN 687640 35 0 120200 0.261 + 24195 RYFILPYVI 9 63 592.3474588953922 1182.6803648575842 2 592.3475341796875 MULTI HCD FTMS 0 0 0 20225 212315.859375 0.1966711147098403 6 -0.18370819091796875 2 Unmodified _RYFILPYVI_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 21.74664581756881 0.17247014374749275 2 [YV]PV 4 6 28.276 0 0 2.3909 0 0 0 721.402233103931 721.402233103931 2.078343878162343 0 0 0 0 0.5 1.3979400086720375 0 0 [YV]PV 2.3909 - 133 NaN NaN 202032.8 NaN 16221 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20228 83.042 NaN 549010 35 0 65032 0.261 + 17330 LYPSIIQEF 9 85 555.2973048987329 1108.5800568642658 2 555.2975463867188 MULTI HCD FTMS 0 0 0 20225 122242.8671875 0.2699865737339638 3 -0.09847259521484375 3 Unmodified _LYPSIIQEF_ ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 76.82478488871298 0.006879825292024087 2 [Y{I|L}][PS]{I|L}{I|L}QE{M(Oxidation (M))|F} 9 0 + 65.78 0 0 5.9337 5.9337 85.933 0 0 0 3.634993639681312 33.000671555173824 3.634993639681312 5.0565842292838425 0 2.610924374808178 1.3010299956639813 0 0.3807196863200844 + + [Y{I|L}][PS]{I|L}{I|L}QE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}QE{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}QE{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}]V[TP]{I|L}[AG]E{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}E[Q{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}E[Q{I|L}]{M(Oxidation (M))|F};[Y{I|L}]V[TP]E[Q{I|L}]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}D[{M(Oxidation (M))|F}V][Q{I|L}]{M(Oxidation (M))|F} 5.9337;5.4776;5.4188;4.7597;4.3035;4.2447;3.7631;3.307;3.2482;1.4893 +;-;-;-;-;-;-;-;-;- + 712 NaN NaN 176079.9 NaN 16222 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20229 83.046 NaN 659060 35 0 85527 0.261 + 14183 LALETEWEL 9 68 552.2839728595741 1102.553392785948 2 552.2841796875 MULTI HCD FTMS 0 0 0 20225 153168.734375 0.6261535581268356 -2 0.05246734619140625 4 Unmodified _LALETEWEL_ ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF;nc|ENSG00000127463|Q8N766-2|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-4|EMC1 103.74828524460852 0.00396301343438984 2 ETEWE{I|L} 6 3 74.73 0 0 6.7779 0 0 297.20518691230626 0 297.20518691230626 0 66.14638779968487 0 0 0 2.1989700043360187 0 1.4604093769761874 0 + ETEWE{I|L} 6.7779 + + 416 NaN NaN 190111.8 NaN 16223 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20230 83.049 NaN 367180 35 0 44532 0.261 + 28821 TVAVCSVPLL 10 76 501.29027197817345 1000.5659910231469 2 501.29119873046875 MULTI HCD FTMS 0 0 0 20225 55705.6875 0.35735156634570653 -7 0.1868896484375 5 Unmodified _TVAVCSVPLL_ ENSG00000109501|ENST00000226760|WFS1;ENST00000507765.1_1_4:6290695-6304192:+|nuORF 10.073929032068715 0.4168838835836452 2 {I|L}DNAPD{I|L}{I|L} 8 8 15.367 0 0 1.5358 0 0 131.13866153281282 0 131.13866153281282 0 3.940162615404075 0 0 0 0.3935078169319297 0 0 0.3807196863200844 {I|L}DNAPD{I|L}{I|L} 1.5358 - 338 + NaN NaN 163293 NaN 16224 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20231 83.052 NaN 292520 35 0 23890 0.261 + 31227 VVPSGGFFPTI 11 71 560.8054580972931 1119.5963632613862 2 560.805419921875 MULTI HCD FTMS 0 0 0 20225 47276.875 0.32804413501794055 -7 0.1868896484375 6 Unmodified _VVPSGGFFPTI_ ENSG00000167778|ENST00000301463|SPRYD3 31.26834338654808 0.19318467762437158 2 VVM[WQ]{I|L}S 7 9 43.363 0 0 3.8731 0 0 0 273.1255282037719 273.1255282037719 29.18198535206066 0 0 0 0 1.3807196863200843 1.5228787452803376 0.8252574989159953 0 VVM[WQ]{I|L}S 3.8731 - 151 + NaN NaN 129424.1 NaN 16225 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20232 83.056 NaN 118540 35 0 13957 0.261 + -1 DMIYLTNLF 9 49 573.2807070698539 1144.5468612065076 2 573.281005859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _DM(Oxidation (M))IYLTNLF_ REV__tr|U7SF19|U7SF19_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02364PE=4SV=1 13.90604991867851 0.24021115267848145 2 N{I|L}{M(Oxidation (M))|F} 3 -1 36.995 0 0 3.2323 0 0 752.3406641750033 0 752.3406641750033 0 32.16190326687972 0 0 0 1 0 0 0.3807196863200844 N{I|L}{M(Oxidation (M))|F} 3.2323 + + 27 NaN NaN 105047 NaN 16226 4004 20225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20234 83.061 NaN 1251700 35 0 57170 0.327 + 23891 RSSKQLVDI 9 95 523.3037994738958 1044.5930460145914 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20233 1426952 0.6441611228914101 9 -0.26902008056640625 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 2 {M(Oxidation (M))|F} 1 9 11.109 0 0 1.0635 0 0 879.5471608600977 0 879.5471608600977 0 0.6246936830414995 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0635 - 40 + NaN NaN 275206.5 NaN 16227 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20235 83.065 NaN 211660 35 0 8905.6 0.261 -1 VILELLFLM 9 86 553.8298454346881 1105.645137936176 2 553.8301391601562 MULTI HCD FTMS 0 0 0 20233 168216.6875 0.42113133552061444 9 -0.26902008056640625 2 Oxidation (M) _VILELLFLM(Oxidation (M))_ ENST00000373365.4_1_6:38649802-38650640:-|nuORF 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.1545 0 0 940.5992985580496 0 940.5992985580496 0 5.774509799928715 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1545 + + 90 + NaN NaN 133246.8 NaN 16228 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20236 83.069 NaN 642870 35 0 50483 0.261 + 4259 EVIDVFEIM 9 85 555.772883019798 1109.5312131063959 2 555.7731323242188 MULTI HCD FTMS 0 0 0 20233 159678.78125 0.8547200225082986 1 -0.03948974609375 3 Oxidation (M) _EVIDVFEIM(Oxidation (M))_ ENSG00000100890|ENST00000534898|PRORP;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-2|PRORP;nc|ENSG00000100890|O15091-4|PRORP 120.45040980043947 0.0012363446172167195 2 {NN|[MP]|[D{I|L}]|[EV]}VD{M(Oxidation (M))|F}{I|L}E{I|L}{M(Oxidation (M))|F} 9 3 + 78.977 0 0 7.118 7.118 86.598 0 0 0 15.439775851775657 16.47817481888638 15.439775851775657 1.7089605114942117 0 1.7302046884880937 1.3979400086720375 0.9581706663129559 0.2742275032520141 {NN|[MP]|[D{I|L}]|[EV]}VD{M(Oxidation (M))|F}{I|L}E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}D[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}VE[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}DV{M(Oxidation (M))|F}{I|L}E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}D{I|L}[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}EE{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[MT]EE{I|L}{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}EE{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}AE{I|L}E{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}{[QN]|[E{I|L}]|[KN]}AE{I|L}{M(Oxidation (M))|F} 7.118;6.964;6.6927;6.688;6.2627;5.7265;5.4146;5.3177;5.0286;4.8348 -;+;-;-;-;-;-;-;-;- + 1042 NaN NaN 190292.7 NaN 16229 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20237 83.072 NaN 254550 35 0 22673 0.261 + 26950 SYLIGTNLF 9 61 514.2766826614965 1026.5388123897928 2 514.2764282226562 MULTI HCD FTMS 0 0 0 20233 99046.296875 0.7952369058316835 -3 0.07865142822265625 4 Unmodified _SYLIGTNLF_ ENSG00000036565|ENST00000276373|SLC18A1;nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1 57.72198328787511 0.020768266150574023 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{[SA]|[TG]}N{I|L}{M(Oxidation (M))|F} 9 0 + 65.881 0 0 6.4178 6.4178 85.885 0 0 0 3.0102999566398125 15.915149811213496 3.0102999566398125 3.0102999566398125 0 2.4247425010840047 0 0.7302046884880937 0.5 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{[SA]|[TG]}N{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Y{I|L}{[SA]|[TG]}N{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{[QG]|[NA]}S{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}{[SA]|[TG]}GG{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Y{I|L}{[QG]|[NA]}S{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}Y{I|L}{[SA]|[TG]}GG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WH][TP]{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WH]{I|L}[TP]{M(Oxidation (M))|F};[DP]VA[PA]{I|L}[TP]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{[SA]|[TG]}[Y{I|L}]S{I|L}{M(Oxidation (M))|F} 6.4178;6.1245;5.1684;5.0337;4.8751;4.7404;3.813;3.4242;2.9387;2.9057 +;-;-;-;-;-;-;-;-;- + 346 NaN NaN 129642.3 NaN 16230 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20238 83.075 NaN 326820 35 0 34022 0.261 + 29859 VFAGVFNTF 9 64 501.25832183753266 1000.5020907418653 2 501.2584533691406 MULTI HCD FTMS 0 0 0 20233 66077.84375 0.3337228756286331 5 -0.15752410888671875 5 Unmodified _VFAGVFNTF_ ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant 21.74664581756881 0.17247014374749275 2 {I|L}[QT]{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 5 8 18.456 0 0 1.8446 0 0 131.07165249951464 217.1081942193969 348.17984671891156 0 0 0 0 0 0.9247425010840047 0 0 0.3494850021680094 {I|L}[QT]{M(Oxidation (M))|F}C(Carbamidomethyl (C)) 1.8446 - 131 + NaN NaN 135045.6 NaN 16231 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20239 83.078 NaN 367760 35 0 88869 0.261 + 31948 VYPAVMVLL 9 51 510.7938611199616 1019.5731693067232 2 510.79388427734375 MULTI HCD FTMS 0 0 0 20233 61701.7578125 0.49406675116075105 3 -0.095184326171875 6 Oxidation (M) _VYPAVM(Oxidation (M))VLL_ ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 45.7499826716795 0.03894913563566938 2 {M(Oxidation (M))|F}V{I|L}{I|L} 4 5 37.423 0 0 3.6704 0 0 529.2891569260829 0 529.2891569260829 0 21.468363042671612 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}V{I|L}{I|L} 3.6704 + + 58 NaN NaN 152940.6 NaN 16232 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20240 83.082 NaN 331800 35 0 34693 0.261 + 24022 RWGLVPSWF 9 73 574.3061055428991 1146.5976581525981 2 574.3064575195312 MULTI HCD FTMS 0 0 0 20233 32752.748046875 0.5225776810990462 -1 0.02618408203125 7 Unmodified _RWGLVPSWF_ ENSG00000183624|ENST00000383463|HMCES 18.1463463914782 0.20357593197100715 2 VDG[TP]{M(Oxidation (M))|F} 6 6 24.13 0 0 2.1045 0 0 512.2845488520403 0 512.2845488520403 0 12.670977955685528 0 0 0 1 0 0 0 VDG[TP]{M(Oxidation (M))|F} 2.1045 - 170 + NaN NaN 145378.1 NaN 16233 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20241 83.085 NaN 196240 35 0 22805 0.262 + 3147 EASGLFIQL 9 49 489.26880909501114 976.5230652568223 2 489.2689514160156 MULTI HCD FTMS 0 0 0 20233 79756.0703125 0.5374132323724714 -7 0.19347381591796875 8 Unmodified _EASGLFIQL_ ENSG00000179409|ENST00000319004|GEMIN4 61.357469665136826 0.01568246967499496 2 {[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}Q{I|L} 8 3 + 56.476 0 0 5.7834 5.7834 84.594 0 0 0 2.2184874961635614 16.40978057358332 2.2184874961635614 2.2184874961635614 0 1.3807196863200843 0 1.5044321917401078 0 {[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}Q{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}Q{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}Q{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}[AG]{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}{[QS]|[NT]}{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}]{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}[AG]{I|L}{I|L} 5.7834;5.5562;5.0082;4.8349;4.781;4.6077;4.0597;3.8325 -;-;-;-;-;-;-;- 150 NaN NaN 134016.2 NaN 16234 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20242 83.088 NaN 217430 35 0 21072 0.262 + 4045 ESEEYLLC 8 55 493.213798396552 984.4130438599041 2 493.2144775390625 MULTI HCD FTMS 0 0 0 20233 8566.1337890625 0.2234941108498784 -3 0.07865142822265625 9 Unmodified _ESEEYLLC_ ENSG00000198752|ENST00000361246|CDC42BPB 5.760428011301431 0.5334459684533844 2 {I|L}{I|L}C{I|L} 4 6 12.747 0 0 1.2949 0 0 524.1404741350979 0 524.1404741350979 0 4.163865622122671 0 0 0 0.15494718957209846 0 0 0 {I|L}{I|L}C{I|L} 1.2949 - 19 + NaN NaN 131221 NaN 16235 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20243 83.092 NaN 142320 35 0 26546 0.261 + 17935 MIRFLHQI 8 42 529.3018266256325 1056.589100318065 2 529.3016967773438 MULTI HCD FTMS 0 0 0 20233 14355.96484375 0.3927771053594855 2 -0.07228851318359375 10 Unmodified _MIRFLHQI_ ENST00000347055.3_1_2:88328059-88333697:-|nuORF 8.593279151180031 0.5292430274356741 2 Q{I|L} 2 6 22.206 0 0 2.1017 0 0 797.4354288533827 0 797.4354288533827 0 16.721675119240516 0 0 0 0.4247425010840047 0 0 0 + Q{I|L} 2.1017 + + 46 NaN NaN 111066.2 NaN 16236 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20244 83.095 NaN 141830 35 0 13290 0.261 + 24278 RYFLPPYTF 9 53 602.3135369074099 NaN 0 602.3138427734375 PEAK HCD FTMS 0 0 0 20233 21871.119140625 0.5161437387200277 6 -0.18377685546875 11 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 22.736283301280096 0.1690317064107932 2 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 5 6 15.445 0 0 1.2843 0 0 165.07772996918908 463.2102450006469 628.287974969836 0 0 0 0 0 0.9247425010840047 0 0 0 T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{I|L} 1.2843 - 13 + NaN NaN 109822.5 NaN 16237 4005 20233 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20246 83.1 NaN 1307100 35 0 148730 0.327 + 15172 LMSLIINTF 9 100 534.2939490319458 1066.5733451306915 2 534.2940673828125 MULTI HCD FTMS 0 0 0 20245 736350.875 0.22737963615287143 16 -0.45584869384765625 1 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 160.51597146486608 8.986712039288196E-09 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 86.052 0 0 8.0681 8.0681 94.357 0 0 0 1.9158274003149245 17.23805083994344 1.9158274003149245 15.31743128760553 0 2.3494850021680094 0 1.7396518287104437 0.6109243748081782 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}KS{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}[{M(Oxidation (M))|F}T]N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[QS]|[NT]}{I|L}{M(Oxidation (M))|F}{I|L}{I|L}S{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}S{M(Oxidation (M))|F}{I|L};[VP][YT]{I|L}KS{M(Oxidation (M))|F}{I|L} 8.0681;6.6319;5.3833;5.2569;4.8327;4.7451;4.7291;4.1385;3.9518;3.8479 +;-;-;-;-;-;-;-;-;- + 1460 NaN NaN 286211.4 NaN 16238 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20247 83.104 NaN 487410 35 0 87391 0.261 + 7535 FYADHPFIFL 10 80 635.3189856520074 1268.6234183708148 2 635.3190307617188 MULTI HCD FTMS 0 0 0 20245 270582.375 0.7135671724534186 1 -0.03279876708984375 2 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 61.357469665136826 0.03648492562855298 2 [Y{M(Oxidation (M))|F}]AD{[{M(Oxidation (M))|F}H]|[RQ]}P{I|L}{M(Oxidation (M))|F}{I|L} 10 2 + 44.842 0 0 3.5347 3.5347 84.25 0 0 0 0.799530816977807 28.643937264016866 0.799530816977807 9.119996000585147 0 2.242992819099939 0 0.7059771852360797 0 [Y{M(Oxidation (M))|F}]AD{[{M(Oxidation (M))|F}H]|[RQ]}P{I|L}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}WA[DN]P{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E][YG]{[{M(Oxidation (M))|F}H]|[RQ]}P{I|L}{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]AD{[{M(Oxidation (M))|F}H]|[RQ]}P{I|L}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]AD{[{M(Oxidation (M))|F}H]|[RQ]}P{M(Oxidation (M))|F}{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}WA[DN]P{I|L}{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YG]{[{M(Oxidation (M))|F}H]|[RQ]}P{I|L}{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}WA[DN]P{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}E][YG]{[{M(Oxidation (M))|F}H]|[RQ]}P{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}VSY{I|L} 3.5347;2.8158;2.7117;2.6212;2.5081;1.9023;1.7982;1.7892;1.6851;1.663 -;-;-;-;-;-;-;-;-;- 434 NaN NaN 177293 NaN 16239 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20248 83.108 NaN 1377900 35 0 382950 0.261 + 3866 EPLAESITDVL 11 75 593.8139013235605 1185.6132497139208 2 593.8138427734375 MULTI HCD FTMS 0 0 0 20245 608685.8125 0.4189224333649523 -2 0.065673828125 3 Unmodified _EPLAESITDVL_ ENSG00000143384|ENST00000369026|MCL1 122.17920374332846 0.016004350311196514 2 ES{I|L}TDV{I|L} 7 4 80.877 0 0 6.8216 0 0 410.2155018537125 0 410.2155018537125 0 47.161450971016166 0 0 0 2.2302046884880937 0 2.004432191740108 0 + ES{I|L}TDV{I|L} 6.8216 + + 1052 NaN NaN 317048.9 NaN 16240 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20249 83.111 NaN 707470 35 0 137500 0.261 + 10458 IPDILDGPEL 10 60 541.2925043116119 1080.5704556900237 2 541.2926635742188 MULTI HCD FTMS 0 0 0 20245 295621.59375 0.2931173275423093 -5 0.147735595703125 4 Unmodified _IPDILDGPEL_ ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 75.76082778847304 0.010759267023115521 2 {[QN]|[E{I|L}]|[KN]}PV{I|L}DGPE{I|L} 10 3 + 70.623 0 0 6.5357 6.5357 85.216 0 0 0 0.7918124604762511 16.53212513775344 0.7918124604762511 0.7918124604762511 0 1.6989700043360187 0 0.4247425010840047 0 {[QN]|[E{I|L}]|[KN]}PV{I|L}DGPE{I|L};[EP]V{I|L}{I|L}DGPE{I|L};[EP]{I|L}V{I|L}DGPE{I|L};[EP]GD{I|L}{I|L}VPE{I|L};{[QN]|[E{I|L}]|[KN]}PGD{I|L}VPE{I|L};[EP]G{I|L}D{I|L}VPE{I|L};[EP]VAD{I|L}VPE{I|L};[EP]{I|L}GD{I|L}VPE{I|L};{[QN]|[E{I|L}]|[KN]}PV{I|L}DG{I|L}[EP];{[QN]|[E{I|L}]|[KN]}PV{[DA]|[EG]}VPE{I|L} 6.5357;6.4624;6.2571;6.0197;5.328;5.2547;5.2547;5.0494;4.1996;4.1747 -;-;-;-;-;-;-;-;-;- 570 NaN NaN 217592.1 NaN 16241 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20250 83.115 NaN 411310 35 0 28517 0.261 + 29860 VFAGVFNTF 9 90 501.25832183753266 1000.5020907418653 2 501.270263671875 MULTI HCD FTMS 0 0 0 20245 36022.57421875 0.1819302261331297 6 -0.170440673828125 5 Unmodified _VFAGVFNTF_ ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant 21.74664581756881 0.17247014374749275 2 V{M(Oxidation (M))|F}[KC]M 5 7 15.054 0 0 1.5047 0 0 374.19355971504064 0 374.19355971504064 0 -0.39615442687990843 -0.39615442687990843 0 0 0.7887254899964358 0 0 0 V{M(Oxidation (M))|F}[KC]M 1.5047 - 692 NaN NaN 156935.1 NaN 16242 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20251 83.118 NaN 598940 35 0 189090 0.261 -1 0 56 510.81304677114326 1019.6115406090865 2 510.8130187988281 MULTI HCD FTMS 0 0 0 20245 134768.234375 0.5916161013315528 -2 0.065673828125 6 NaN NaN 2 {I|L}V{M(Oxidation (M))|F} 3 -1 11.427 0 0 1.1207 0 0 131.1344692383937 526.2667225937536 657.4011918321473 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.1207 - 53 + NaN NaN 188435.9 NaN 16243 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20252 83.121 NaN 398870 35 0 30057 0.261 + 12881 KYFPYLVLL 9 96 578.3442991792316 1154.674045425263 2 578.3447265625 MULTI HCD FTMS 0 0 0 20245 33284.2109375 0.04262073259362062 11 -0.3049468994140625 7 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 15.847184025352803 0.2234401846867398 2 V{I|L}{I|L} 3 6 28.812 0 0 2.4953 0 0 811.4272907967526 0 811.4272907967526 0 5.536049848239344 0 0 0 0.5 0 0 0 + V{I|L}{I|L} 2.4953 + + 1300 NaN NaN 159164.3 NaN 16244 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20253 83.125 NaN 375050 35 0 32945 0.262 + 1970 DAIYEVVSL 9 79 504.7664396585492 1007.5183263838984 2 504.766357421875 MULTI HCD FTMS 0 0 0 20245 81284.703125 1 0 0 8 Unmodified _DAIYEVVSL_ ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L 34.40172386719151 0.0910440009062557 2 VVS{I|L} 4 5 45.745 0 0 4.5404 0 0 591.2544830176336 0 591.2544830176336 0 18.57840941039747 0 0 0 1.3807196863200843 0 0 0 + VVS{I|L} 4.5404 + + 334 NaN NaN 157821.3 NaN 16245 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20254 83.128 NaN 275330 35 0 27052 0.261 + 5372 FGLGACHTF 9 59 476.7207962601471 951.4270395870942 2 476.7207336425781 MULTI HCD FTMS 0 0 0 20245 30684.5859375 0.2927279996029015 -6 0.1772918701171875 9 Unmodified _FGLGACHTF_ REV__ENST00000566982.1_1_16:75263411-75272069:-|nuORF 4.75600775471527 0.31496297302216103 2 [{I|L}P]TK 4 -1 10.757 0 0 1.1306 0 0 0 509.1184207728943 509.1184207728943 6.091444694250681 0 0 0 0 0 1.154901959985743 0 0 [{I|L}P]TK 1.1306 - 24 NaN NaN 137926.9 NaN 16246 4006 20245 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20256 83.133 NaN 984850 35 0 93394 0.327 + 27434 SYVGLVYMF 9 76 547.764695610018 1093.5148382868358 2 547.775634765625 MULTI HCD FTMS 0 0 0 20255 42277.4453125 0.5132595445274704 5 -0.13764190673828125 1 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 40.44857923139169 0.06328554730241728 2 T{M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 8 7 64.819 0 0 5.9275 0 0 63.996382698008865 0 63.996382698008865 0 30 0 0 0 1.4419628234359578 0 2.2034021960761265 0.3494850021680094 T{M(Oxidation (M))|F}YVRPT{M(Oxidation (M))|F} 5.9275 - 2375 + NaN NaN 248035.6 NaN 16247 4007 20255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20257 83.137 NaN 343420 35 0 29831 0.261 + 11549 IYSPLLFKYF 10 61 645.8603519813042 1289.7061510294084 2 645.8602294921875 MULTI HCD FTMS 0 0 0 20255 183140.703125 0.2675598732587158 6 -0.16390228271484375 2 Unmodified _IYSPLLFKYF_ ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 96.93554129104106 0.00047009049263694176 2 {I|L}YSP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 10 0 + 113.92 0 0 8.833 8.833 95.94 0 0 0 92.23705952196511 10.012262311882765 10.012262311882765 18.979400086720375 0 2.9802046884880937 2 0.4247425010840047 0.3494850021680094 + + {I|L}YSP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{I|L}Y[TP]V{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{I|L}{M(Oxidation (M))|F}YK{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}{I|L}KY{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}{I|L}YK{M(Oxidation (M))|F};{I|L}YSP{I|L}[PG][KA]{I|L}[MT];[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}K{I|L}Y{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};{I|L}YSP[KQ][{I|L}P]{I|L}[MT] 8.833;7.3614;7.031;6.6048;6.1013;5.6751;4.9851;4.9175;4.8592;4.5328 +;-;+;-;-;-;-;-;-;- + 524 + NaN NaN 136343.8 NaN 16248 4007 20255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20258 83.141 NaN 146670 35 0 12731 0.261 + 28907 TWFTAGAKLLF 11 48 627.8475655601902 1253.6805781871803 2 628.3494873046875 MULTI HCD FTMS 0 0 0 20255 69496.921875 0.06228848565391186 35 -0.9739303588867188 3 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 55.24861242081279 0.05986536799177808 2 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F} 10 2 + 81.368 0 0 6.4903 6.4903 88.71 0 0 0 7.269987279362624 78.8937472782898 7.269987279362624 9.164539485499262 0 2.8494850021680094 0 1.1549471895720984 0 {[WT]|[RM]}{M(Oxidation (M))|F}TAQK{I|L}{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}{M(Oxidation (M))|F}TA[AG]K{I|L}{I|L}{M(Oxidation (M))|F} 6.4903;5.7593 -;+ + 113 NaN NaN 120715.5 NaN 16249 4007 20255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20259 83.144 NaN 314560 35 0 26790 0.261 + 34869 YSDGVELLQM 10 79 577.773813394787 1153.533073856374 2 577.7740478515625 MULTI HCD FTMS 0 0 0 20255 63207.81640625 0.012284741896595671 37 -1.026397705078125 4 Unmodified _YSDGVELLQM_ ENSG00000084444|ENST00000197268|FAM234B 22.736283301280096 0.29844449404982915 2 SV[MN]VYN 7 8 42.453 0 0 3.6803 0 0 328.1412525861344 0 328.1412525861344 0 8.363109537310862 0 0 0 1 0 0.6747425010840047 0 SV[MN]VYN 3.6803 - 563 NaN NaN 145746 NaN 16250 4007 20255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20260 83.147 NaN 63752 35 0 7286.3 0.264 + 8209 GRAQLLGH 8 44 426.24596776695273 850.4773826007055 2 426.2456970214844 MULTI HCD FTMS 0 0 0 20255 31107.236328125 0.01868130395383248 18 -0.501617431640625 5 Unmodified _GRAQLLGH_ REV__ENSG00000107789|ENST00000371996|MINPP1;REV__nc|ENSG00000107789|Q9UNW1-2|MINPP1;REV__nc|ENSG00000107789|Q9UNW1-3|MINPP1 0.6903765706972694 0.5409681170271811 2 Q[{M(Oxidation (M))|F}V] 3 -1 6.2321 0 0 0.73277 0 0 458.27452284980626 0 458.27452284980626 0 6.232084705535465 0 0 0 0 0 0 0 Q[{M(Oxidation (M))|F}V] 0.73277 - 4 NaN NaN 102124.1 NaN 16251 4007 20255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20261 83.151 NaN 153770 35 0 13804 0.261 + 6702 FPNVEIVTI 9 61 516.2923854194374 1030.5702179056748 2 516.2911987304688 MULTI HCD FTMS 0 0 0 20255 38920.7109375 0.12832684810870654 9 -0.249237060546875 6 Unmodified _FPNVEIVTI_ ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF;nc|ENSG00000183337|Q6W2J9-2|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR 14.405379775768559 0.2358970535022398 2 VH{I|L}VT{I|L} 6 4 40.583 0 0 3.938 0 0 350.1372547834 0 350.1372547834 0 30.617968113107068 0 0 0 1.1989700043360187 0 0 0 VH{I|L}VT{I|L} 3.938 - 128 NaN NaN 127450.5 NaN 16252 4007 20255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20263 83.156 NaN 1360800 35 0 357720 0.327 + 1244 AYLPVNESFGF 11 75 622.3035831521231 1242.5926133710461 2 622.3035888671875 MULTI HCD FTMS 0 0 0 20262 740773.9375 0.8757852034028905 2 -0.06233978271484375 1 Unmodified _AYLPVNESFGF_ ENSG00000167658|ENST00000309311|EEF2 184.3555567057281 4.8247114547322947E-14 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 11 0 + 127.7 0 0 10.277 10.277 97.844 0 0 0 24.35728569561438 103.42147043888613 24.35728569561438 26.985167001732833 0 3.416386562212267 1.6989700043360187 0 1.7856668758921828 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVNE[YQ]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}PVGGE[YQ]{M(Oxidation (M))|F};[YN]{I|L}[PG]{I|L}ES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG][PG]{I|L}ES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YN]{I|L}[PG]{I|L}E[YQ]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[W{M(Oxidation (M))|F}]N[{I|L}T]{I|L}{[ES]|[DT]|[{I|L}C]};[YN]{I|L}[H{I|L}][Y{M(Oxidation (M))|F}]HH 10.277;8.1053;7.8257;6.4846;6.0226;5.0007;3.5713;1.9736;0.1473 +;-;-;-;-;-;-;-;- + 881 NaN NaN 294473.4 NaN 16253 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20264 83.16 NaN 808620 35 0 39877 0.262 -1 0 111 531.8170833266972 1061.6196137201944 2 531.8171997070312 MULTI HCD FTMS 0 0 0 20262 677846.0625 0.5438668447205405 12 -0.33448028564453125 2 NaN NaN 2 D 1 -1 10.234 0 0 0.96396 0 0 61.053848116239415 882.4919527643186 943.5458008805581 0 0 0 0 0 0.4247425010840047 0 0.28872548999643577 0 D 0.96396 - 442 + NaN NaN 215764.8 NaN 16254 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20265 83.164 NaN 1105000 35 0 87902 0.261 -1 HRGCKVDAF 9 107 545.2664288920874 1088.5183048509748 2 545.7494506835938 MULTI HCD FTMS 0 0 0 20262 14279.453125 0.05840222713030237 -6 0.17383575439453125 3 Carbamidomethyl (C) _HRGC(Carbamidomethyl (C))KVDAF_ ENST00000593400.5_1_19:12790334-12790485:-|nuORF 24.020572477871973 0.15282392193088168 2 ESP{M(Oxidation (M))|F}{I|L}{[DA]|[EG]}{M(Oxidation (M))|F} 8 -1 38.969 0 0 3.58 0 0 164.1138420843193 0 164.1138420843193 0 11.209843353918778 0 0 0 0.3252574989159953 0 1.1382104921644451 0 ESP{M(Oxidation (M))|F}{I|L}{[DA]|[EG]}{M(Oxidation (M))|F} 3.58 - 1731 + NaN NaN 264430.5 NaN 16255 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20266 83.167 NaN 849910 35 0 103290 0.261 + 34043 YNAYRTPTF 9 105 566.7743351395294 NaN 0 566.787353515625 PEAK HCD FTMS 0 0 0 20262 18394.451171875 0.9426623009207763 -1 0.02289581298828125 4 Unmodified _YNAYRTPTF_ ENSG00000101940|ENST00000376729|WDR13 18.1463463914782 0.1998403495282098 2 VTVY{I|L}VS 7 8 31.847 0 0 2.8145 0 0 166.03505735797802 201.06636987857658 367.1014272365546 0 0 0 0 0 0.7302046884880937 0 0 0 VTVY{I|L}VS 2.8145 - 1237 + NaN NaN 214376.9 NaN 16256 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20267 83.17 NaN 433600 35 0 40404 0.261 + 10156 IFSDASRLIF 10 77 584.8216813396132 1167.6288097460263 2 585.8133544921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IFSDASRLIF_ ENSG00000154330|ENST00000396396|PGM5;ENST00000496758.1_1_9:71114067-71144569:+|nuORF 10.073929032068715 0.4168838835836452 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 9 17.911 0 0 1.534 0 0 0 126.08908906516662 126.08908906516662 -1.8258999534726392 0 -1.8258999534726392 0 0 0 0 0.3252574989159953 0.3054621874040891 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 1.534 - 423 NaN NaN 150796.8 NaN 16257 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20268 83.174 NaN 346160 35 0 114150 0.261 -1 IPVTIMDVF 9 52 525.7806299555876 1049.5467069779752 2 525.780517578125 MULTI HCD FTMS 0 0 0 20262 157439.765625 0.30358151739404265 -21 0.5995101928710938 6 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 25.399314129420986 0.14091189997036632 2 TYPDV{M(Oxidation (M))|F} 6 -1 53.057 0 0 5.0553 0 0 309.20417983222814 0 309.20417983222814 0 39.869777077526564 0 0 0 1.5941876774005248 0 0.3494850021680094 0 TYPDV{M(Oxidation (M))|F} 5.0553 - 140 NaN NaN 139308.8 NaN 16258 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20269 83.177 NaN 354880 35 0 27972 0.261 + 15137 LMLQGVDLL 9 77 501.29027197817345 1000.5659910231469 2 501.2880859375 MULTI HCD FTMS 0 0 0 20262 131820.640625 0.8456284181761194 -3 0.095184326171875 7 Unmodified _LMLQGVDLL_ ENSG00000144381|ENST00000388968|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;HSPD1|p.R37Q|1|0.17|ENSG00000144381|chr2:197498739-197498739|C/T|missense_variant;nc|ENSG00000144381|P10809-2|HSPD1 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}T{I|L} 3 7 18.116 0 0 1.8106 0 0 621.3951858493434 0 621.3951858493434 0 1.0239186008268248 0 0 0 0.8494850021680094 0 0.3054621874040891 0 {M(Oxidation (M))|F}T{I|L} 1.8106 - 244 + NaN NaN 146757.3 NaN 16259 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20270 83.18 NaN 409060 35 0 41451 0.261 + 4358 EWDQVTVYL 9 79 576.782291421889 1151.550029910578 2 576.7822875976562 MULTI HCD FTMS 0 0 0 20262 175687.046875 1 0 0 8 Unmodified _EWDQVTVYL_ ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L 31.26834338654808 0.10542797264966089 2 TVY{I|L} 4 5 50.433 0 0 4.3796 0 0 657.2759350978841 0 657.2759350978841 0 35.28273777167044 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + TVY{I|L} 4.3796 + + 352 NaN NaN 159888.6 NaN 16260 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20271 83.184 NaN 242390 35 0 26722 0.261 + 435 ALEESPLTTFT 11 51 604.8047217504087 1207.5948905676173 2 604.8048706054688 MULTI HCD FTMS 0 0 0 20262 115387.171875 0.8028425935690221 -4 0.121368408203125 9 Unmodified _ALEESPLTTFT_ REV__ENSG00000181291|ENST00000631683|TMEM132E 2.735195868890462 0.4069250265843076 2 AER 3 -1 13.812 0 0 1.1438 0 0 339.18140570403006 509.1989229791625 848.3803286831926 0 0 0 0 0 0 0 0 0 AER 1.1438 - 93 + NaN NaN 130660.2 NaN 16261 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20272 83.187 NaN 101470 35 0 13895 0.261 + 35741 YYLPHLFPSF 10 39 642.3265151818448 1282.6384774304895 2 642.3258666992188 MULTI HCD FTMS 0 0 0 20262 65507.04296875 1 0 0 10 Unmodified _YYLPHLFPSF_ ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 37.97399986684836 0.1629881689457739 2 YY{I|L}G 4 7 46.995 0 0 3.6639 0 0 0 783.3837852951131 783.3837852951131 28.807196863200843 0 0 0 0 1.3807196863200843 2 0 0 YY{I|L}G 3.6639 - 31 + NaN NaN 110845.4 NaN 16262 4008 20262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20274 83.192 NaN 431420 35 0 57011 0.326 + 7449 FVTSIDVVL 9 60 496.7868472454244 991.5591415576488 2 496.786865234375 MULTI HCD FTMS 0 0 0 20273 208228.734375 0.19371150956911648 -3 0.0918121337890625 1 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 64.23631603340823 0.01165516075559909 2 DVV{I|L} 4 5 54.993 0 0 5.5461 0 0 547.3009221787125 0 547.3009221787125 0 34.58674701179433 0 0 0 1.5 0 0.805462187404089 0 + DVV{I|L} 5.5461 + + 565 NaN NaN 173966.8 NaN 16263 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20275 83.196 NaN 259400 35 0 58407 0.261 + 10454 IPDIIDEAAF 10 62 552.2839728595741 1102.553392785948 2 552.2843627929688 MULTI HCD FTMS 0 0 0 20273 106469.2734375 0.435246231328466 3 -0.0786285400390625 2 Unmodified _IPDIIDEAAF_ REV__ENSG00000167548|ENST00000301067|KMT2D;REV__KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D 32.78568957990786 0.20801173326193015 2 {I|L}{M(Oxidation (M))|F}AD{[MS]|[{M(Oxidation (M))|F}A]}{I|L}D 8 -1 60.711 0 0 5.5064 0 0 0 207.1134432428344 207.1134432428344 53.492304306103335 0 0 0 0 1.805462187404089 1.154901959985743 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}AD{[MS]|[{M(Oxidation (M))|F}A]}{I|L}D 5.5064 - 145 + NaN NaN 139415.3 NaN 16264 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20276 83.2 NaN 145460 35 0 24473 0.261 + 7439 FVTAGNRHI 9 48 507.7779005571365 1013.541248181073 2 507.7780456542969 MULTI HCD FTMS 0 0 0 20273 46879.47265625 0.18597877676320193 -3 0.0918121337890625 3 Unmodified _FVTAGNRHI_ ENSG00000137802|ENST00000457542|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF;ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-5|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 19.256988751693697 0.19398022840297344 2 TD{I|L} 3 7 34.693 0 0 3.4229 0 0 666.3563709943375 0 666.3563709943375 0 31.593793813122062 0 0 0 0.4247425010840047 0 0.4247425010840047 0 TD{I|L} 3.4229 - 17 NaN NaN 131930.9 NaN 16265 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20277 83.203 NaN 197490 35 0 23407 0.261 + 5262 FFDTRYLLE 9 49 602.3051600694349 1202.5957672056697 2 603.3062133789062 MULTI HCD FTMS 0 0 0 20273 42825.56640625 0.12523902388694422 -8 0.2395477294921875 4 Unmodified _FFDTRYLLE_ REV__ENSG00000131446|ENST00000307826|MGAT1;REV__MGAT1|p.R298Lfs*7|1|0.47|ENSG00000131446|chr5:180792055-180792079|GGGCGTATGCAGGCCCGCCCCTGCC/-|frameshift_variant 6.723162845929126 0.3000504726104499 2 E{I|L}NDDN{I|L}{I|L}E 9 -1 42.725 0 0 3.5528 0 0 129.09398790523693 0 129.09398790523693 0 26.52758118237223 0 0 0 0.15494718957209846 0 0.8494850021680094 0.3807196863200844 E{I|L}NDDN{I|L}{I|L}E 3.5528 - 103 + NaN NaN 138398 NaN 16266 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20278 83.206 NaN 107710 35 0 11355 0.263 + 25144 SAIFPDVAL 9 35 466.75805454711207 931.5015561610242 2 466.7579345703125 MULTI HCD FTMS 0 0 0 20273 37085.48046875 0.23200649430690004 4 -0.104888916015625 5 Unmodified _SAIFPDVAL_ ENSG00000143499|ENST00000366957|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;nc|ENSG00000143499|Q9NRG4-2|SMYD2 19.256988751693697 0.19398022840297344 2 A{I|L} 2 7 25.969 0 0 2.7879 0 0 729.3702391236228 0 729.3702391236228 0 7.4569033504329205 0 0 0 0.5 0 0 0 + A{I|L} 2.7879 + + 13 NaN NaN 117624.8 NaN 16267 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20279 83.21 NaN 513580 35 0 142420 0.261 + 29738 VDPVEVDVSP 10 65 528.2665596713052 1054.5185664094104 2 528.2660522460938 MULTI HCD FTMS 0 0 0 20273 28487.466796875 0.6481831997807864 -3 0.0918121337890625 6 Unmodified _VDPVEVDVSP_ REV__AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;REV__ENSG00000124942|ENST00000378024|AHNAK 52.268347100219714 0.06954005568441465 2 VDT{I|L}SEP 7 -1 79.233 0 0 7.5136 0 0 0 310.14069544010005 310.14069544010005 56.56881689349298 0 0 0 0 0.8807196863200843 1.6989700043360187 1.1989700043360187 0 VDT{I|L}SEP 7.5136 - 1059 + NaN NaN 175619.1 NaN 16268 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20280 83.213 NaN 91945 35 0 18933 0.261 -1 YLLCLHFMV 9 42 598.3019168954959 1194.5892808577917 2 598.3016967773438 MULTI HCD FTMS 0 0 0 20273 28459.15234375 0.42810977267978273 -7 0.20995330810546875 7 Carbamidomethyl (C) _YLLC(Carbamidomethyl (C))LHFMV_ ENST00000309134.9_1_11:8969263-8969317:-|nuORF 9.347437153973935 0.2795965555214564 2 C 1 -1 6.9897 0 0 0.58511 0 0 843.4313656740011 245.1290224664672 1088.5603881404684 0 0 0 0 0 0 0 0 0 C 0.58511 + + 24 + NaN NaN 102660.3 NaN 16269 4009 20273 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20282 83.218 NaN 1304500 35 0 49674 0.327 + 23892 RSSKQLVDI 9 103 523.3037994738958 1044.5930460145914 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20281 1362318 0.614983750410091 14 -0.3901214599609375 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 2 Q 1 8 11.867 0 0 1.136 0 0 502.30026599849185 411.2230153476041 913.5232813460959 0 0 0 0 0 0.7887254899964358 0 0 0 + Q 1.136 + + 107 + NaN NaN 298378.6 NaN 16270 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20283 83.222 NaN 784650 35 0 57937 0.261 -1 0 102 545.317042992181 1088.6195330511619 2 545.3169555664062 MULTI HCD FTMS 0 0 0 20281 245846.015625 0.2728852231810791 18 -0.49832916259765625 2 NaN NaN 2 TDVN{I|L}DT{M(Oxidation (M))|F} 8 -1 35.984 0 0 3.3055 0 0 165.1808256310431 0 165.1808256310431 0 1.9133185204407965 0 0 0 0 0 0.8921590589602533 0.5994850021680094 TDVN{I|L}DT{M(Oxidation (M))|F} 3.3055 - 2385 + NaN NaN 210315.6 NaN 16271 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20284 83.226 NaN 637620 35 0 63817 0.261 + 26139 SPMDIFDMF 9 85 567.7280993560862 1133.4416457789723 2 567.7279052734375 MULTI HCD FTMS 0 0 0 20281 246567.78125 0.414706393111375 -41 1.1562652587890625 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 46.542 0 0 4.1063 0 0 559.2323509936497 0 559.2323509936497 0 33.778084186634096 0 0 0 1.3807196863200843 0 0.3807196863200844 0 + {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.1063 + + 1162 + NaN NaN 186992.1 NaN 16272 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20285 83.229 NaN 423750 35 0 52391 0.261 + 31228 VVPSGGFFPTI 11 78 560.8054580972931 1119.5963632613862 2 560.805419921875 MULTI HCD FTMS 0 0 0 20281 138148.296875 0.9585815169162732 -1 0.02622222900390625 4 Unmodified _VVPSGGFFPTI_ ENSG00000167778|ENST00000301463|SPRYD3 61.60191391372663 0.033776152178474975 2 VV[PS]N{M(Oxidation (M))|F}{I|L}P[{M(Oxidation (M))|F}T] 10 4 + 51.517 0 0 4.6014 4.6014 82.602 0 0 0 41.32705250104253 1.5950774251622022 1.5950774251622022 1.9736368974327831 0 1.6307196863200843 1.6989700043360187 1.064909327626439 0 VV[PS]N{M(Oxidation (M))|F}{I|L}P[{M(Oxidation (M))|F}T];VV[PS]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L};VV[PS]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L};VV[PS]GG{M(Oxidation (M))|F}{I|L}P[{M(Oxidation (M))|F}T];VV{M(Oxidation (M))|F}{I|L}{[QG]|[NA]}{M(Oxidation (M))|F}[TP]{I|L};VV[PS]N{M(Oxidation (M))|F}T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};VV[PS]GG{M(Oxidation (M))|F}T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};VV{M(Oxidation (M))|F}{I|L}{[QG]|[NA]}T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L};[TP][{I|L}A]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L};[TP][{I|L}A]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{I|L} 4.6014;4.4251;4.1601;3.7828;3.6164;3.5523;3.2874;2.7436;1.9039;1.6389 -;-;+;-;-;-;-;-;-;- + 250 + NaN NaN 160268.8 NaN 16273 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20286 83.233 NaN 312340 35 0 28592 0.261 + -1 KPTMLSVPI 9 84 501.29027197817345 1000.5659910231469 2 501.2900085449219 MULTI HCD FTMS 0 0 0 20281 113746.2265625 0.7296811879042511 -1 0.02622222900390625 5 Oxidation (M) _KPTM(Oxidation (M))LSVPI_ REV__ENSG00000154240|ENST00000535342|CEP112 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 10.701 0 0 1.0695 0 0 380.2356592023563 323.1710299127563 703.4066891151126 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.0695 - 185 + NaN NaN 151141.2 NaN 16274 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20287 83.236 NaN 158910 35 0 10114 0.261 -1 HLPHFAELM 9 64 555.772883019798 1109.5312131063959 2 555.7732543945312 MULTI HCD FTMS 0 0 0 20281 26252.744140625 0.1405242818558875 6 -0.16400146484375 6 Oxidation (M) _HLPHFAELM(Oxidation (M))_ ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 28.486842064014134 0.11819662193267319 2 [YV][TP]{I|L}EE{I|L}{M(Oxidation (M))|F} 9 -1 + 46.053 0 0 4.1507 4.1507 81.278 0 0 0 0.28028723600243666 6.398474608419775 0.28028723600243666 0.28028723600243666 0 1.274227503252014 1.5228787452803376 0 0 [YV][TP]{I|L}EE{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}EE{I|L}{M(Oxidation (M))|F};[YV][TP]{I|L}{I|L}EE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}A{I|L}{I|L}EE{M(Oxidation (M))|F};[YV][TP][WM]A{[QD]|[EN]|[WG]|[KD]|[RS]};[{M(Oxidation (M))|F}E]{I|L}A[WM]A{[QD]|[EN]|[WG]|[KD]|[RS]};{[{M(Oxidation (M))|F}H]|[RQ]}{[WT]|[RM]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}H]|[RQ]}[PG]V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}PY 4.1507;4.1254;2.509;2.4838;0.9789;0.95364;0.50189;0.21259 -;-;-;-;-;-;-;- 217 NaN NaN 131637.4 NaN 16275 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20288 83.239 NaN 85547 35 0 12448 0.262 + 3622 ELAPSDHH 8 46 453.2097317391929 NaN 0 453.2090759277344 PEAK HCD FTMS 0 0 0 20281 25773.15625 0.5646472050385771 -36 1.0019760131835938 7 Unmodified _ELAPSDHH_ REV__ENSG00000075568|ENST00000186436|TMEM131;REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant 2.577480529830294 0.38822285293237185 2 M 1 -1 2.7642 0 0 0.30564 0 0 593.2213911133483 177.11467920474846 770.3360703180967 0 0 0 0 0 0 0 0 0 M 0.30564 - 1 + NaN NaN 98015.1 NaN 16276 4010 20281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20290 83.244 NaN 1803600 35 0 477210 0.327 + 3867 EPLAESITDVL 11 83 593.8139013235605 1185.6132497139208 2 593.8140869140625 MULTI HCD FTMS 0 0 0 20289 1403800.125 0.9661525737024208 3 -0.08524322509765625 1 Unmodified _EPLAESITDVL_ ENSG00000143384|ENST00000369026|MCL1 125.52916310638031 0.012977282242411743 2 [DV]VPES{I|L}TDV{I|L} 11 4 + 105.53 0 0 8.9013 8.9013 95.841 0 0 0 21.008116033883837 67.43257301517002 21.008116033883837 17.698405410982616 0 2.4489700043360187 1.3010299956639813 2.4291746928241125 0 [DV]VPES{I|L}TDV{I|L};[DV]VPSE{I|L}TDV{I|L};[DV]TV[DP]{I|L}TDV{I|L};[DV]T{I|L}SE[VP]DV{I|L};[DV]T{I|L}S{I|L}[DP]DV{I|L};[DV]VT[DP]{I|L}TDV{I|L};[DV]VPES{I|L}T[{I|L}V]D;[DV]TTVE[VP]DV{I|L};[DV]TTV{I|L}[DP]DV{I|L};[DV]TVTE[VP]DV{I|L} 8.9013;7.4085;6.3041;6.1441;6.1237;5.9685;5.9648;5.6159;5.5954;5.5105 -;-;-;-;-;-;-;-;-;- 2586 NaN NaN 361650.6 NaN 16277 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20291 83.249 NaN 908440 35 0 100070 0.261 + 15173 LMSLIINTF 9 97 534.2939490319458 1066.5733451306915 2 534.2942504882812 MULTI HCD FTMS 0 0 0 20289 534796.6875 0.1651412123595438 21 -0.586883544921875 2 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 160.51597146486608 8.986712039288196E-09 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 85.187 0 0 7.987 7.987 94.194 0 0 0 6.376594808824862 46.281225404088275 6.376594808824862 15.005084446084766 0 2.2302046884880937 0 1.7658715643802765 0.5796896906561032 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}[{M(Oxidation (M))|F}T]N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}K{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[YV]VN;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{I|L}{[CP]|[EA]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}{I|L}{[CP]|[EA]}{M(Oxidation (M))|F} 7.987;6.5801;5.2286;4.9261;4.5613;3.592;3.3295;3.1298;3.0725;2.6102 +;-;-;-;-;-;-;-;-;- + 1797 NaN NaN 240591.5 NaN 16278 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20292 83.252 NaN 857000 35 0 107420 0.261 + 12277 KLPALFFL 8 57 474.79961005534796 947.5846671774959 2 474.79949951171875 MULTI HCD FTMS 0 0 0 20289 389699.03125 0.27263775232456705 -6 0.18377685546875 3 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 86.12129899796855 0.01802651791127688 2 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 69.224 0 0 7.3054 7.3054 95.711 0 0 0 15.11922997584469 49.76046779720966 15.11922997584469 62.01378218198131 0 2.3494850021680094 0 0 0.9634679910804405 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}P[{I|L}A]K{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}P[{I|L}A]{I|L}K 7.3054;0.76095;0.44327 +;-;- + 84 NaN NaN 220800.2 NaN 16279 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20293 83.256 NaN 200550 35 0 24087 0.261 + 26263 SQQFELIL 8 50 489.26880909501114 976.5230652568223 2 489.26885986328125 MULTI HCD FTMS 0 0 0 20289 92337.1171875 0.6221869811445905 -1 0.02625274658203125 4 Unmodified _SQQFELIL_ REV__ENSG00000187823|ENST00000695839|RTL4 24.020572477871973 0.4170589785259073 2 {I|L}{I|L}{I|L} 3 -1 35.445 0 0 3.6297 0 0 619.2593711152666 0 619.2593711152666 0 23.221740651475642 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L} 3.6297 + + 20 NaN NaN 122660.8 NaN 16280 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20294 83.259 NaN 169750 35 0 30491 0.261 + 7536 FYADHPFIFL 10 39 635.3189856520074 1268.6234183708148 2 635.319091796875 MULTI HCD FTMS 0 0 0 20289 109379.5 0.28845049696739744 6 -0.1606597900390625 5 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 19.256988751693697 0.33098864134661865 2 {I|L}{M(Oxidation (M))|F}{I|L} 3 7 31.198 0 0 2.4592 0 0 877.3817616193375 0 877.3817616193375 0 31.197887582883936 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L} 2.4592 + + 7 NaN NaN 118226.6 NaN 16281 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20295 83.262 NaN 237390 35 0 42241 0.261 + 24196 RYFILPYVI 9 55 592.3474588953922 1182.6803648575842 2 592.3475952148438 MULTI HCD FTMS 0 0 0 20289 38221.19921875 0.035404825047108845 13 -0.36386871337890625 6 Unmodified _RYFILPYVI_ ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B 15.847184025352803 0.2234401846867398 2 {I|L}[WY]V{I|L} 5 5 24.208 0 0 2.0469 0 0 490.2793421643571 0 490.2793421643571 0 21.989700043360184 0 0 0 0.5 0 0 0 {I|L}[WY]V{I|L} 2.0469 - 12 NaN NaN 146294.1 NaN 16282 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20296 83.266 NaN 565690 35 0 58848 0.261 + 25458 SFAIGFYLLL 10 85 572.3261424096205 1142.637731886041 2 572.3132934570312 MULTI HCD FTMS 0 0 0 20289 28116.3359375 0.3274200935217986 -5 0.144287109375 7 Unmodified _SFAIGFYLLL_ ENSG00000131482|ENST00000253801|G6PC1 25.399314129420986 0.2735354021946395 2 {M(Oxidation (M))|F}CQE{M(Oxidation (M))|F}{I|L}{I|L} 7 6 43.827 0 0 3.8356 0 0 244.17849929023595 0 244.17849929023595 0 22.54538718343332 0 0 0 0 0 1.0189301784845295 1.3494850021680094 {M(Oxidation (M))|F}CQE{M(Oxidation (M))|F}{I|L}{I|L} 3.8356 - 442 NaN NaN 198278 NaN 16283 4011 20289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20298 83.27 NaN 1480700 35 0 310540 0.327 + 10459 IPDILDGPEL 10 68 541.2925043116119 1080.5704556900237 2 541.2926635742188 MULTI HCD FTMS 0 0 0 20297 911575.875 0.9038537440468765 1 -0.0262603759765625 1 Unmodified _IPDILDGPEL_ ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 69.10491478415734 0.018645933849003846 2 [EP]V{I|L}{I|L}DGPE{I|L} 10 2 + 76.617 0 0 7.0905 7.0905 87.496 0 0 0 6.9897000433601875 16.53212513775344 6.9897000433601875 3.979400086720375 0 1.3494850021680094 0 0.6747425010840047 0 [EP]V{I|L}{I|L}DGPE{I|L};[EP]{I|L}V{I|L}DGPE{I|L};{[QN]|[E{I|L}]|[KN]}PV{I|L}DGPE{I|L};[DP]{I|L}{I|L}{I|L}DGPE{I|L};[EP]GD{I|L}{I|L}VPE{I|L};[EP]VAD{I|L}VPE{I|L};[DP]AD{I|L}{I|L}VPE{I|L};[DP]GE{I|L}{I|L}VPE{I|L};[EP]G{I|L}D{I|L}VPE{I|L};[EP]{I|L}GD{I|L}VPE{I|L} 7.0905;6.7222;6.4436;6.3703;5.9589;5.3569;5.2388;5.2217;5.194;4.9887 -;-;-;-;-;-;-;-;-;- 874 NaN NaN 317224.6 NaN 16284 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20299 83.275 NaN 1005700 35 0 74650 0.261 -1 SYVGLVYMF 9 79 547.764695610018 1093.5148382868358 2 547.775634765625 MULTI HCD FTMS 0 0 0 20297 35908.4921875 0.4359387424806211 10 -0.28540802001953125 2 Oxidation (M) _SYVGLVYM(Oxidation (M))F_ ENSG00000109066|ENST00000335464|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104 24.67388899826682 0.14717941214954053 2 PE{I|L}DPT{M(Oxidation (M))|F} 7 -1 55.245 0 0 5.052 0 0 276.13020801515455 0 276.13020801515455 0 17.99926291259105 0 0 0 0.8807196863200843 0 1.7544321917401078 0 PE{I|L}DPT{M(Oxidation (M))|F} 5.052 - 2292 + NaN NaN 250443.1 NaN 16285 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20300 83.278 NaN 408270 35 0 159080 0.261 -1 0 47 510.81304677114326 1019.6115406090865 2 510.81304931640625 MULTI HCD FTMS 0 0 0 20297 213874.5 0.9388829530270026 4 -0.11159515380859375 3 NaN NaN 2 {I|L}V{M(Oxidation (M))|F} 3 -1 11.427 0 0 1.1207 0 0 131.1339657709122 526.2676444098378 657.4016101807499 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.1207 - 39 + NaN NaN 155557.2 NaN 16286 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20301 83.282 NaN 264190 35 0 29148 0.261 -1 TLQRMSGC 8 59 476.7207962601471 951.4270395870942 2 476.72064208984375 MULTI HCD FTMS 0 0 0 20297 104822.859375 1 0 0 4 Carbamidomethyl (C) _TLQRMSGC(Carbamidomethyl (C))_ ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.73465 0 0 131.9283629356358 669.4068697565061 801.335232692142 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.73465 + + 43 + NaN NaN 131025.8 NaN 16287 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20302 83.285 NaN 223700 35 0 49038 0.261 + 14564 LFIKVKANPF 10 55 588.8604908885285 1175.7064288438569 2 588.861083984375 MULTI HCD FTMS 0 0 0 20297 74667.8125 0.8336791193538784 -2 0.05240631103515625 5 Unmodified _LFIKVKANPF_ REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1 20.453626601364224 0.3197956946484955 2 YY{I|L}{[QN]|[E{I|L}]|[KN]} 5 -1 25.229 0 0 2.1458 0 0 476.3430388065506 0 476.3430388065506 0 0.16711877743475156 0 0 0 1 0 0 0 YY{I|L}{[QN]|[E{I|L}]|[KN]} 2.1458 - 64 + NaN NaN 141510 NaN 16288 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20303 83.288 NaN 70302 35 0 16972 0.263 + -1 CCGSYCESHHF 11 30 481.83422953789 NaN 0 481.83453369140625 PEAK HCD FTMS 0 0 0 20297 6915.408203125 0.22497913470418937 7 -0.196868896484375 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))GSYC(Carbamidomethyl (C))ESHHF_ REV__ENSG00000196748|ENST00000403376|CLPSL2;REV__nc|ENSG00000196748|Q6UWE3-2|CLPSL2 0.09484139111097674 0.34185110575506755 2 S 1 -1 5.4846 0 0 0.57032 0 0 165.27939052752112 706.3246554010374 871.6040459285584 0 0 0 0 0 0 0 0 0 S 0.57032 + + 1 + NaN NaN 100822.2 NaN 16289 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20304 83.292 NaN 58474 35 0 4571.8 0.261 + -1 YCWCFYCIYR 10 39 492.8678894042969 NaN 0 492.8678894042969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YCWCFYC(Carbamidomethyl (C))IYR_ REV__ENST00000491103.5_1_6:10748006-10756744:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92124.7 NaN 16290 4012 20297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20306 83.297 NaN 665760 35 0 25498 0.327 -1 0 98 531.8170833266972 1061.6196137201944 2 531.8171997070312 MULTI HCD FTMS 0 0 0 20305 630000.5625 0.505478215563199 17 -0.47544097900390625 1 NaN NaN 2 D 1 -1 8.3718 0 0 0.78859 0 0 105.07979543173515 838.4672335260374 943.5470289577726 0 0 0 0 0 0.28872548999643577 0 0.3494850021680094 0 D 0.78859 - 147 + NaN NaN 204175.1 NaN 16291 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20307 83.301 NaN 951930 35 0 54877 0.261 + 31384 VYAFNLDTF 9 113 545.2664288920874 1088.5183048509748 2 545.2665405273438 MULTI HCD FTMS 0 0 0 20305 380417.34375 1 0 0 2 Unmodified _VYAFNLDTF_ ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 160.51597146486608 8.986712039288196E-09 2 [YV]A{M(Oxidation (M))|F}N{I|L}DT{M(Oxidation (M))|F} 9 0 + 101.4 0 0 9.3152 9.3152 95.94 0 0 0 20.210215427001827 67.57515625508537 20.210215427001827 15.638181262758266 0 2.6976212463643425 1.6989700043360187 0.3054621874040891 1.055462187404089 + + [YV]A{M(Oxidation (M))|F}N{I|L}DT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QVDT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}GG{I|L}DT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}[AG]VDT{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}SVN{I|L}DT{M(Oxidation (M))|F};[YV]AEY{I|L}GQ{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}N[DV]YV;[YV]A{M(Oxidation (M))|F}QE[VS]{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}SVQVDT{M(Oxidation (M))|F};[YV]A{M(Oxidation (M))|F}QEAYV 9.3152;7.8785;7.4996;6.3618;5.9874;5.9785;5.4875;4.9368;4.8718;4.8548 +;-;-;-;-;-;-;-;-;- + 3090 NaN NaN 232425.2 NaN 16292 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20308 83.305 NaN 331570 35 0 68814 0.261 + 1245 AYLPVNESFGF 11 65 622.3035831521231 1242.5926133710461 2 622.3036499023438 MULTI HCD FTMS 0 0 0 20305 133002.78125 0.15724347460615323 7 -0.19347381591796875 3 Unmodified _AYLPVNESFGF_ ENSG00000167658|ENST00000309311|EEF2 61.08992128646608 0.03587860019897562 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NES{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 11 0 + 89.5 0 0 7.2027 7.2027 89.762 0 0 0 24.357285695614365 63.81405798157704 24.357285695614365 9.128498242810991 0 2.6549471895720984 1.6989700043360187 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]GGES{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]NE[YQ]{M(Oxidation (M))|F} 7.2027;6.4681;5.3037 +;-;- + 274 NaN NaN 130211.5 NaN 16293 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20309 83.308 NaN 213130 35 0 12683 0.261 + 30038 VFQKTKEVK 9 71 553.8301378904499 NaN 0 553.830078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VFQKTKEVK_ tr|U7SNI7|U7SNI7_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01728PE=4SV=1 3.5964929083625545 0.27781873954207675 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.63218 0 0 664.4553555550796 291.1346230743487 955.5899786294283 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.63218 + + 34 + NaN NaN 144422.4 NaN 16294 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20310 83.311 NaN 165920 35 0 12613 0.261 + 28908 TWFTAGAKLLF 11 53 627.8475655601902 1253.6805781871803 2 627.8477783203125 MULTI HCD FTMS 0 0 0 20305 79797.1796875 0.05829547091008894 45 -1.0917510986328125 5 Unmodified _TWFTAGAKLLF_ ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2 39.212999716063884 0.1420185906124365 2 K{I|L}{I|L}{M(Oxidation (M))|F} 4 7 33.716 0 0 2.6894 0 0 734.3439808576187 0 734.3439808576187 0 14.764034681398638 0 0 0 0.805462187404089 0 0 0 + K{I|L}{I|L}{M(Oxidation (M))|F} 2.6894 + + 53 NaN NaN 131326.8 NaN 16295 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20311 83.315 NaN 262160 35 0 52010 0.261 + -1 LLFTECIVLI 10 57 610.8500333536604 NaN 0 610.8499755859375 PEAK HCD FTMS 0 0 0 20305 63845.3359375 0.6359911296539063 1 -0.03282928466796875 6 Carbamidomethyl (C) _LLFTEC(Carbamidomethyl (C))IVLI_ REV__ENST00000448876.5_1_3:185010652-185010739:+|nuORF 9.38312468134398 0.33215363477037435 2 {I|L}E{M(Oxidation (M))|F} 3 -1 20.445 0 0 1.6763 0 0 131.09531679203798 696.3691500299436 827.4644668219817 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}E{M(Oxidation (M))|F} 1.6763 - 16 + NaN NaN 134722.3 NaN 16296 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20312 83.318 NaN 146830 35 0 10972 0.261 + 11550 IYSPLLFKYF 10 44 645.8603519813042 1289.7061510294084 2 646.3621215820312 MULTI HCD FTMS 0 0 0 20305 56208.0234375 0.10230374380301514 12 -0.33771514892578125 7 Unmodified _IYSPLLFKYF_ ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 67.83816525789305 0.020146919733137328 2 [Y{I|L}]S[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 10 0 + 81.119 0 0 6.2898 6.2898 87.879 0 0 0 0.41447825603967203 0.41447825603967203 0.41447825603967203 8.424778212679485 0 2.9247425010840047 1.6989700043360187 0.4247425010840047 0 + + [Y{I|L}]S[{I|L}P]{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F};[Y{I|L}][TP]V{I|L}{M(Oxidation (M))|F}KY{M(Oxidation (M))|F} 6.2898;5.6365 +;- + 74 NaN NaN 125412.4 NaN 16297 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20313 83.321 NaN 157140 35 0 24041 0.262 -1 HLPHFAELM 9 63 555.772883019798 1109.5312131063959 2 556.2575073242188 MULTI HCD FTMS 0 0 0 20305 16342.060546875 0.11766746762319431 11 -0.31145477294921875 8 Oxidation (M) _HLPHFAELM(Oxidation (M))_ ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 16.942295170755138 0.21397866736869717 2 [YV]TD[HD]SK 8 -1 30.399 0 0 2.7398 0 0 0 161.0915518117271 161.0915518117271 13.984484532805155 0 0 0 0 0.3054621874040891 2 0 0 [YV]TD[HD]SK 2.7398 - 218 NaN NaN 115547.5 NaN 16298 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20314 83.325 NaN 87576 35 0 5213.2 0.261 + 26951 SYLIGTNLF 9 52 514.2766826614965 1026.5388123897928 2 514.2764892578125 MULTI HCD FTMS 0 0 0 20305 24001.77734375 0.19270886193143963 5 -0.1377410888671875 9 Unmodified _SYLIGTNLF_ ENSG00000036565|ENST00000276373|SLC18A1;nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1 30.636539890814138 0.10832830463492794 2 N{I|L}{M(Oxidation (M))|F} 3 6 32.435 0 0 3.1596 0 0 634.3328625380335 0 634.3328625380335 0 26.95046257204389 0 0 0 0.9247425010840047 0 0 0 + N{I|L}{M(Oxidation (M))|F} 3.1596 + + 34 + NaN NaN 103797.5 NaN 16299 4013 20305 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20316 83.33 NaN 571640 35 0 190610 0.327 + 10332 ILPPTSYIF 9 72 525.7971385926352 1049.5797242520703 2 525.7807006835938 MULTI HCD FTMS 0 0 0 20315 158276.6875 0.3867147402958144 -3 0.08524322509765625 1 Unmodified _ILPPTSYIF_ ENST00000473764.5_1_X:48755552-48755627:+|nuORF 44.40701690623563 0.04511410083598184 2 {I|L}{I|L}PSYPT{I|L}{M(Oxidation (M))|F} 9 4 + 44.432 0 0 4.2333 4.2333 83.32 0 0 0 7.476635822175467 17.14165367738062 7.476635822175467 4.982653242032448 0 1.5612431371158735 1.154901959985743 0.28872548999643577 0 {I|L}{I|L}PSYPT{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[{M(Oxidation (M))|F}E]APT{I|L}{M(Oxidation (M))|F};{I|L}{I|L}P{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}PS[TP]Y{I|L}{M(Oxidation (M))|F};[DV]{[QV]|[N{I|L}]|[RA]|[KV]}[KT]T{I|L}{M(Oxidation (M))|F} 4.2333;3.7586;3.3275;3.3178;2.168 -;-;-;-;- 228 NaN NaN 191606.1 NaN 16300 4014 20315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20317 83.334 NaN 288030 35 0 40381 0.261 + 13597 KYPENFFLL 9 55 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 20315 235822.109375 0.0011987487363739752 289 -6.7680816650390625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 40.23920728925047 0.06424668180817725 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 54.944 0 0 4.6976 4.6976 86.485 0 0 0 2.3367404008160264 31.756368635175605 2.3367404008160264 9.208187539523749 0 2.110924374808178 0 0 0.2742275032520141 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YE][KP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YE][KP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.6976;3.9103;2.5541;2.4096;1.7668 +;-;-;-;- + 132 NaN NaN 136705 NaN 16301 4014 20315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20318 83.338 NaN 516830 35 0 204600 0.261 -1 0 50 510.81304677114326 1019.6115406090865 2 510.8132019042969 MULTI HCD FTMS 0 0 0 20315 126646.5 0.5559626786294499 6 -0.16064453125 3 NaN NaN 2 {I|L}V{M(Oxidation (M))|F} 3 -1 13.188 0 0 1.2934 0 0 131.13538852834137 526.2661412249015 657.4015297532428 0 0 0 0 0 0 0 0 0 {I|L}V{M(Oxidation (M))|F} 1.2934 - 12 + NaN NaN 167567.7 NaN 16302 4014 20315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20319 83.341 NaN 170080 35 0 23148 0.261 + -1 SLFPQQEMI 9 61 575.7747776951919 NaN 0 575.7920532226562 PEAK HCD FTMS 0 0 0 20315 17140.240234375 0.18110274650048644 5 -0.13777923583984375 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))SLFPQQEM(Oxidation (M))I_ REV__ENSG00000080493|ENST00000264485|SLC4A4;REV__nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;REV__SLC4A4|p.M1049V|1|0.38|ENSG00000080493|chr4:71563838-71563838|A/G|missense_variant 6.2057823575117 0.2651744870083793 2 {M(Oxidation (M))|F}EKGG 5 -1 18.742 0 0 1.6304 0 0 131.05811214903025 497.2084139459594 628.2665260949897 0 0 0 0 0 0.1435078169319297 0 0.7614393726401688 0.3494850021680094 {M(Oxidation (M))|F}EKGG 1.6304 - 54 + NaN NaN 118149.6 NaN 16303 4014 20315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20320 83.344 NaN 67943 35 0 12541 0.264 -1 0 39 404.170087933589 806.325622933978 2 404.16943359375 MULTI HCD FTMS 0 0 0 20315 25486.318359375 0.6435698377359038 2 -0.0525054931640625 5 NaN NaN 2 {I|L} 1 -1 10.485 0 0 1.3003 0 0 155.09462148258268 535.1195772760374 690.2141987586201 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 1.3003 - 2 + NaN NaN 101362 NaN 16304 4014 20315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20321 83.348 NaN 63702 35 0 14259 0.261 + 4117 ETDAVPHH 8 30 453.2097317391929 NaN 0 453.2093200683594 PEAK HCD FTMS 0 0 0 20315 7065.2236328125 0.15478735854247888 -32 0.9074249267578125 6 Unmodified _ETDAVPHH_ REV__ENSG00000142864|ENST00000361219|SERBP1;REV__ENST00000484880.1_1_1:67885652-67890638:-|nuORF;REV__ENST00000510079.2_1_4:79102321-79102666:-|nuORF;REV__nc|ENSG00000142864|Q8NC51-2|SERBP1;REV__nc|ENSG00000142864|Q8NC51-4|SERBP1;REV__nc|ENSG00000142864|Q8NC51|SERBP1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89643.5 NaN 16305 4014 20315 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20323 83.352 NaN 1099300 35 0 46114 0.327 + 19302 NLVLEKSSR 9 96 523.3037994738958 1044.5930460145914 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20322 1245676.75 0.5623290300162321 19 -0.5244522094726562 1 Unmodified _NLVLEKSSR_ ENSG00000164309|ENST00000446378|CMYA5;ENSG00000164309|ENST00000446378|CMYA5 6.2057823575117 0.30397260197431997 2 Q 1 9 10.727 0 0 1.0269 0 0 502.2997681075564 411.22332673061146 913.5230948381679 0 0 0 0 0 0.6747425010840047 0 0 0 Q 1.0269 - 98 + NaN NaN 267296 NaN 16306 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20324 83.357 NaN 671590 35 0 112250 0.261 + 7450 FVTSIDVVL 9 53 496.7868472454244 991.5591415576488 2 496.78704833984375 MULTI HCD FTMS 0 0 0 20322 426914.5625 0.39715106854552684 3 -0.08203125 2 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 100.37149154755038 0.004254194004462789 2 [{M(Oxidation (M))|F}V]TS{I|L}DVV{I|L} 9 0 + 69.816 0 0 7.041 7.041 93.899 0 0 0 4.762036441594191 54.94604968113293 4.762036441594191 27.64014361800122 0 2.473197507588033 0 1.274227503252014 0 + + [{M(Oxidation (M))|F}V]TS{I|L}DVV{I|L};VV[{M(Oxidation (M))|F}V]{I|L}STD{I|L};[{M(Oxidation (M))|F}V]TS{I|L}VVD{I|L};[{M(Oxidation (M))|F}V]T{[ET]|[MV]}{I|L}AV{I|L};[{M(Oxidation (M))|F}V]TS{I|L}{[QN]|[E{I|L}]|[KN]}A{I|L};[{M(Oxidation (M))|F}V]T{[ET]|[MV]}{I|L}VA{I|L} 7.041;4.2535;3.3851;2.6661;2.3625;1.5546 +;-;-;-;-;- + 470 NaN NaN 194542.2 NaN 16307 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20325 83.36 NaN 785820 35 0 82119 0.261 + 7640 FYINTGTLQF 10 84 602.3051600694349 1202.5957672056697 2 602.3057250976562 MULTI HCD FTMS 0 0 0 20322 316676.46875 0.3787633584704813 -3 0.08197021484375 3 Unmodified _FYINTGTLQF_ ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant 114.4966697963812 4.563610280778346E-05 2 [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 92.527 0 0 7.694 7.694 90.726 0 0 0 7.269987279362624 78.63609387697268 7.269987279362624 9.164539485499247 0 2.6237125054200234 0 1.6549471895720984 0.23965182871044374 + + [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]TGT{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]TGT{I|L}[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[KS]GT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NT[RP][RH];[Q{I|L}][DP]{[QG]|[NA]}GT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NTG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT] 7.694;6.9319;6.7326;5.9736;5.5726;4.8105;4.2066;4.1487;3.6421;3.6265 +;-;-;-;-;-;-;-;-;- + 1702 NaN NaN 205957.3 NaN 16308 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20326 83.364 NaN 474500 35 0 156480 0.262 + 16290 LQQEPTLPS 9 60 506.77143202267723 NaN 0 506.78948974609375 PEAK HCD FTMS 0 0 0 20322 16684.12109375 0.2273176271450926 6 -0.170654296875 4 Unmodified _LQQEPTLPS_ ENST00000467588.1_1_1:117575773-117576720:+|nuORF 13.90604991867851 0.22786006501039813 2 TV{M(Oxidation (M))|F}VT 5 8 19.208 0 0 1.8989 0 0 232.10998943422322 229.11910425357658 461.22909368779983 0 0 0 0 0 0.3182503180159344 0 0.7302046884880937 0 TV{M(Oxidation (M))|F}VT 1.8989 - 40 + NaN NaN 157219.9 NaN 16309 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20327 83.367 NaN 1159900 35 0 291100 0.261 + 7545 FYAHIIPFL 9 80 560.813352009123 1119.612151085046 2 560.8148193359375 MULTI HCD FTMS 0 0 0 20322 234706.875 0.17197556362570582 -4 0.108123779296875 5 Unmodified _FYAHIIPFL_ ENSG00000131238|ENST00000642050|PPT1;nc|ENSG00000131238|P50897-2|PPT1 56.04830969593885 0.023109620888794903 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HH{I|L}P{M(Oxidation (M))|F} 8 4 45.891 0 0 4.0988 0 0 0 128.07202544271607 128.07202544271607 24.7273429256591 0 0 0 0 1.3494850021680094 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}HH{I|L}P{M(Oxidation (M))|F} 4.0988 - 477 NaN NaN 278050.5 NaN 16310 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20328 83.37 NaN 726720 35 0 108450 0.261 + 21586 PYNDYFEYF 9 63 629.2586630593668 1256.5027731855334 2 629.2587890625 MULTI HCD FTMS 0 0 0 20322 220633.390625 0.03771058101569854 -6 0.1605987548828125 6 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 70.33199760932243 0.0089807860198535 2 DY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 6 3 57.964 0 0 4.6131 0 0 374.15880019355626 0 374.15880019355626 0 45.65675328855981 0 0 0 2.2302046884880937 0 0 0 + DY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4.6131 + + 189 NaN NaN 220561 NaN 16311 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20329 83.374 NaN 139570 35 0 19739 0.262 + 6838 FPSVLVEEL 9 45 516.7845205095587 1031.5544880859172 2 516.7847900390625 MULTI HCD FTMS 0 0 0 20322 60643.3125 0.7436934961223689 1 -0.02962493896484375 7 Unmodified _FPSVLVEEL_ ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2 36.12702656103203 0.08312389501731911 2 VEE{I|L} 4 5 45.745 0 0 4.4346 0 0 543.3060169904312 0 543.3060169904312 0 35.28782221775522 0 0 0 1.3807196863200843 0 0 0 + VEE{I|L} 4.4346 + + 36 NaN NaN 119886.5 NaN 16312 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20330 83.377 NaN 86080 35 0 9051.5 0.261 + 2055 DEFQWLQID 9 43 597.27694829538 1192.5393436575598 2 597.27685546875 MULTI HCD FTMS 0 0 0 20322 13668.28125 0.40070657417454214 3 -0.08203125 8 Unmodified _DEFQWLQID_ DCBLD2|p.Y348F|1|0.27|ENSG00000057019|chr3:98819246-98819246|T/A|missense_variant 10.150570793230772 0.27265765907388223 2 {I|L}Q{NN|[MP]|[D{I|L}]|[EV]} 4 5 29.693 0 0 2.4899 0 0 705.2753163068375 0 705.2753163068375 0 24.20818753952375 0 0 0 1.3494850021680094 0 0 0 + {I|L}Q{NN|[MP]|[D{I|L}]|[EV]} 2.4899 + + 21 NaN NaN 98944.3 NaN 16313 4015 20322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20332 83.382 NaN 627810 35 0 143460 0.327 + 3868 EPLAESITDVL 11 76 593.8139013235605 1185.6132497139208 2 593.8140258789062 MULTI HCD FTMS 0 0 0 20331 304430.28125 0.20952135172565206 8 -0.2261199951171875 1 Unmodified _EPLAESITDVL_ ENSG00000143384|ENST00000369026|MCL1 51.629811660486645 0.07472562200723704 2 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}TDV{I|L} 7 5 54.003 0 0 4.5548 0 0 392.20359999824376 0 392.20359999824376 0 48.51805419770287 0 0 0 1.6989700043360187 0 1.1307196863200843 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}TDV{I|L} 4.5548 - 330 NaN NaN 184640.5 NaN 16314 4016 20331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20333 83.386 NaN 725770 35 0 82324 0.261 + 26140 SPMDIFDMF 9 100 567.7280993560862 1133.4416457789723 2 567.72802734375 MULTI HCD FTMS 0 0 0 20331 311737.59375 0.524316569041932 -35 0.9961776733398438 2 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 61.357469665136826 0.01568246967499496 2 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS + + 54.196 13.812 3.0959 4.7815 4.7815 61.976 0 0 0 0 40.70107520596089 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7815 - 714 + NaN NaN 192730 NaN 16315 4016 20331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20334 83.39 NaN 141850 35 0 13385 0.261 + 11801 KEIQNRLT 8 62 501.29027197817345 1000.5659910231469 2 501.2908630371094 MULTI HCD FTMS 0 0 0 20331 104958.859375 0.6733102934869083 5 -0.14102935791015625 3 Unmodified _KEIQNRLT_ tr|U7T489|U7T489_FUSNUFlagellarFliJproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00297PE=4SV=1 6.2057823575117 0.5327852213979698 2 {I|L}DA 3 7 13.188 0 0 1.318 0 0 131.1378136014692 567.2605074518186 698.3983210532879 0 0 0 0 0 0 0 0 0 {I|L}DA 1.318 - 43 + NaN NaN 115443.6 NaN 16316 4016 20331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20335 83.393 NaN 292460 35 0 38511 0.262 + 21431 PVVGARRG 8 66 406.24854258882544 810.4825322444509 2 406.24871826171875 MULTI HCD FTMS 0 0 0 20331 207504.390625 0.06022691297308146 -7 0.19022369384765625 4 Unmodified _PVVGARRG_ ENSG00000085644|ENST00000396878|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;nc|ENSG00000085644|O14771-2|ZNF213 2.577480529830294 0.5381683276125971 2 P 1 7 9.6041 0 0 1.185 0 0 590.3515488233556 120.0503405206664 710.401889344022 0 0 0 0 0 0.5 0 0 0 + P 1.185 + + 3 + NaN NaN 139397.5 NaN 16317 4016 20331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20336 83.397 NaN 229000 35 0 20795 0.261 + 12882 KYFPYLVLL 9 56 578.3442991792316 1154.674045425263 2 578.3441772460938 MULTI HCD FTMS 0 0 0 20331 67123.7421875 0.08595255786080083 21 -0.5967941284179688 5 Unmodified _KYFPYLVLL_ ENSG00000136802|ENST00000372600|LRRC8A 21.74664581756881 0.17247014374749275 2 V{I|L}{I|L} 3 6 35.005 0 0 3.0316 0 0 811.4259510724625 0 811.4259510724625 0 15.541134294324124 0 0 0 0.8807196863200843 0 0 0 + V{I|L}{I|L} 3.0316 + + 75 NaN NaN 123566.2 NaN 16318 4016 20331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20337 83.4 NaN 78178 35 0 18654 0.262 -1 0 39 467.10194807159957 NaN 0 467.1016540527344 PEAK HCD FTMS 0 0 0 20331 33446.9609375 0.5786525574851359 26 -0.7246932983398438 6 NaN NaN 2 W 1 -1 1.5938 0 0 0.17097 0 0 164.80977885628664 578.2884615533811 743.0982404096678 0 0 0 0 0 0 0 0 0 W 0.17097 - 1 + NaN NaN 121878.3 NaN 16319 4016 20331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20339 83.405 NaN 2052600 35 0 294040 0.326 + 12278 KLPALFFL 8 67 474.79961005534796 947.5846671774959 2 474.79949951171875 MULTI HCD FTMS 0 0 0 20338 1429365.625 1 0 0 1 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 86.12129899796855 0.01802651791127688 2 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 72.331 0 0 7.6332 7.6332 90.013 0 0 0 15.726825097560422 45.955612550363796 15.726825097560422 7.7815125038364386 0 2.3494850021680094 0 0 1.024227503252014 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[PA]{I|L}K{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[PA]K{I|L}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}[PA]{I|L}{I|L}K 7.6332;6.812;1.5906;1.4587;1.2729 +;-;-;-;- + 104 NaN NaN 408109.3 NaN 16320 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20340 83.409 NaN 824050 35 0 116480 0.261 + 25459 SFAIGFYLLL 10 98 572.3261424096205 1142.637731886041 2 572.313720703125 MULTI HCD FTMS 0 0 0 20338 84845.8125 0.98804566588747 1 -0.0294952392578125 2 Unmodified _SFAIGFYLLL_ ENSG00000131482|ENST00000253801|G6PC1 25.399314129420986 0.2735354021946395 2 {I|L}{M(Oxidation (M))|F}QCE{M(Oxidation (M))|F}{I|L}{I|L} 8 6 49.127 0 0 4.2995 0 0 131.1200018496225 0 131.1200018496225 0 16.925689751636575 0 0 0 0.3054621874040891 0 1.0501648626366045 1.4247425010840047 {I|L}{M(Oxidation (M))|F}QCE{M(Oxidation (M))|F}{I|L}{I|L} 4.2995 - 1045 + NaN NaN 218209.2 NaN 16321 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20341 83.413 NaN 668680 35 0 60535 0.261 + 15174 LMSLIINTF 9 100 534.2939490319458 1066.5733451306915 2 534.2943725585938 MULTI HCD FTMS 0 0 0 20338 544152.5 0.16803021720002081 27 -0.7542495727539062 3 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 126.56589448801843 0.0008132384440316759 2 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 4 76.93 0 0 7.2128 0 0 460.2348574371352 0 460.2348574371352 0 57.07423650326979 0 0 0 2.305462187404089 0 1.5044321917401078 0.5387254899964358 + {I|L}{I|L}NT{M(Oxidation (M))|F} 7.2128 + + 2020 + NaN NaN 200045.8 NaN 16322 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20342 83.416 NaN 341430 35 0 54010 0.261 + 10460 IPDILDGPEL 10 63 541.2925043116119 1080.5704556900237 2 541.2925415039062 MULTI HCD FTMS 0 0 0 20338 258829.875 0.2566372783723955 6 -0.17702484130859375 4 Unmodified _IPDILDGPEL_ ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35 43.77239144664712 0.11267038882370725 2 [EP]V{I|L}{I|L}DGPE{I|L} 10 2 + 67.657 0 0 6.2612 6.2612 92.151 0 0 0 4.884381005764311 53.84434091480394 4.884381005764311 23.57963467823147 0 1.305462187404089 0 0.4247425010840047 0 [EP]V{I|L}{I|L}DGPE{I|L};[EP][DG]{I|L}{I|L}VPE{I|L};[EP]V{[DA]|[EG]}{I|L}VPE{I|L};[EP]V{I|L}{[DA]|[EG]}VPE{I|L};[EP][DG]{I|L}{I|L}D[{I|L}P]{I|L};[EP]V{[DA]|[EG]}{I|L}D[{I|L}P]{I|L};[EP]V{I|L}{[DA]|[EG]}D[{I|L}P]{I|L};[EP][{I|L}A][DV]VPE{I|L} 6.2612;4.079;3.941;3.9003;1.9507;1.8127;1.7719;1.7653 -;-;-;-;-;-;-;- 272 NaN NaN 142237.8 NaN 16323 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20343 83.42 NaN 298160 35 0 40078 0.261 + 2793 DYHEHGSLF 9 59 552.738793786967 NaN 0 552.757568359375 PEAK HCD FTMS 0 0 0 20338 18756.611328125 0.9637726145802724 1 -0.0294952392578125 5 Unmodified _DYHEHGSLF_ ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B;nc|ENSG00000135503|P36896-5|ACVR1B 8.593279151180031 0.2536050107310812 2 Y{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 4 7 15.433 0 0 1.3986 0 0 131.05964543190277 441.17719446353755 572.2368398954403 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 1.3986 - 151 + NaN NaN 144570.5 NaN 16324 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20344 83.423 NaN 284380 35 0 20735 0.261 + 33318 YFTSNSWVW 9 58 595.2683382408209 1188.5221235484416 2 595.2688598632812 MULTI HCD FTMS 0 0 0 20338 118244.6015625 0.9599970087522539 5 -0.15090179443359375 6 Unmodified _YFTSNSWVW_ ENSG00000197601|ENST00000354817|FAR1;ENST00000427163.1_1_13:90823702-90823903:+|nuORF 30.636539890814138 0.10832830463492794 2 WVW 3 6 38.94 0 0 3.2764 0 0 699.2839166166042 0 699.2839166166042 0 27.001962355242952 0 0 0 1.4247425010840047 0 0 0 + WVW 3.2764 + + 56 + NaN NaN 151718.9 NaN 16325 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20345 83.426 NaN 353310 35 0 44373 0.261 -1 0 67 640.2495834146127 1278.4846138960254 2 640.2494506835938 MULTI HCD FTMS 0 0 0 20338 180015.21875 0.28141401911518993 -4 0.108245849609375 7 NaN NaN 2 PYNDY{M(Oxidation (M))|F}E 7 -1 86.017 0 0 6.728 0 0 0 347.10065637760005 347.10065637760005 52.51676943156134 0 0 0 0 2.2753187046026264 2 0 0.7302046884880937 PYNDY{M(Oxidation (M))|F}E 6.728 - 717 + NaN NaN 154415.3 NaN 16326 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20346 83.43 NaN 109770 35 0 14178 0.261 + 7537 FYADHPFIFL 10 43 635.3189856520074 1268.6234183708148 2 635.31884765625 MULTI HCD FTMS 0 0 0 20338 65028.8046875 0.17149091949867387 12 -0.3409881591796875 8 Unmodified _FYADHPFIFL_ ENSG00000149257|ENST00000358171|SERPINH1 10.073929032068715 0.4168838835836452 2 {M(Oxidation (M))|F}{I|L} 2 8 25.969 0 0 2.047 0 0 990.4584828107437 0 990.4584828107437 0 24.3753063169585 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.047 + + 9 NaN NaN 118172.7 NaN 16327 4017 20338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20348 83.434 NaN 882250 35 0 36888 0.327 -1 0 108 531.8170833266972 1061.6196137201944 2 531.8171997070312 MULTI HCD FTMS 0 0 0 20347 622359.75 0.4993476428338247 22 -0.6198043823242188 1 NaN NaN 2 KQRV[{M(Oxidation (M))|F}V] 6 -1 12.049 0 0 1.1349 0 0 286.1413680984983 0 286.1413680984983 0 3.6767698415056334 0 0 0 0.28872548999643577 0 0 0.4247425010840047 KQRV[{M(Oxidation (M))|F}V] 1.1349 - 391 NaN NaN 231351.5 NaN 16328 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20349 83.439 NaN 813300 35 0 213390 0.261 + 10333 ILPPTSYIF 9 80 525.7971385926352 1049.5797242520703 2 525.7972412109375 MULTI HCD FTMS 0 0 0 20347 336044.71875 0.821052349476206 1 -0.032867431640625 2 Unmodified _ILPPTSYIF_ ENST00000473764.5_1_X:48755552-48755627:+|nuORF 67.34385681178166 0.00994769994983633 2 {I|L}{I|L}PP{[MG]|[TS]}Y{I|L}{M(Oxidation (M))|F} 9 0 + 63.312 0 0 6.0321 6.0321 85.911 0 0 0 4.71432511009715 4.71432511009715 4.71432511009715 4.71432511009715 0 1.9247425010840047 1.3979400086720375 0.3252574989159953 0 + + {I|L}{I|L}PP{[MG]|[TS]}Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}PSYPT{I|L}{M(Oxidation (M))|F};{I|L}{I|L}PS[TP]Y{I|L}{M(Oxidation (M))|F};{I|L}{I|L}P{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}V]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}PSY{I|L}[TP]{M(Oxidation (M))|F} 6.0321;5.583;4.8582;3.8883;3.2697 +;-;-;-;- + 452 + NaN NaN 222039.7 NaN 16329 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20350 83.442 NaN 872850 35 0 87912 0.262 -1 0 84 414.7617495201249 827.5089461070498 2 414.7617492675781 MULTI HCD FTMS 0 0 0 20347 413519.75 0.16616618275839967 -6 0.16400146484375 3 NaN NaN 2 A 1 -1 8.4113 0 0 1.0165 0 0 105.07876152877584 648.3807583232002 753.4595198519761 0 0 0 0 0 0.3807196863200844 0 0 0 A 1.0165 - 30 + NaN NaN 224050.7 NaN 16330 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20351 83.446 NaN 317050 35 0 155490 0.261 -1 FVVTMLKLI 9 52 540.3303988001484 1078.6462446670967 2 540.33056640625 MULTI HCD FTMS 0 0 0 20347 84964.671875 0.22861596115343338 1 -0.032867431640625 4 Oxidation (M) _FVVTM(Oxidation (M))LKLI_ ENSG00000160445|ENST00000291900|ZER1 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5751 0 0 913.5684076083061 0 913.5684076083061 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5751 + + 4 + NaN NaN 135333.1 NaN 16331 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20352 83.449 NaN 688880 35 0 67386 0.261 -1 ACAISIDVVM 10 80 547.764695610018 1093.5148382868358 2 547.7756958007812 MULTI HCD FTMS 0 0 0 20347 12388.462890625 0.15039926782798455 16 -0.44242095947265625 5 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))AISIDVVM(Oxidation (M))_ ENST00000550963.1_1_12:72004384-72005014:-|nuORF 20.453626601364224 0.3197956946484955 2 E{I|L}DPT{M(Oxidation (M))|F} 6 -1 45.851 0 0 4.193 0 0 373.18291549601014 0 373.18291549601014 0 23.16946789630613 0 0 0 0.4247425010840047 0 1.4604093769761874 0 E{I|L}DPT{M(Oxidation (M))|F} 4.193 - 717 + NaN NaN 199474.5 NaN 16332 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20353 83.452 NaN 141900 35 0 8370.5 0.261 + 10736 IREARKHLQ 9 66 575.8432761945854 1149.6719994559708 2 575.84326171875 MULTI HCD FTMS 0 0 0 20347 112990.21875 0.5974044856965334 -10 0.27874755859375 6 Unmodified _IREARKHLQ_ REV__ENSG00000066084|ENST00000301180|DIP2B 1.4819007175156935 0.3397831423917744 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.40047 0 0 131.19543730825654 868.3845919244749 999.5800292327315 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.40047 - 16 + NaN NaN 122269.9 NaN 16333 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20354 83.456 NaN 141120 35 0 42899 0.264 -1 0 42 423.275077087981 844.535601242762 2 423.2748718261719 MULTI HCD FTMS 0 0 0 20347 43902.8828125 0.10713946349745435 -6 0.16400146484375 7 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.551 0 0 679.4571080560418 0 679.4571080560418 0 10.334733948153065 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.551 - 6 + NaN NaN 124775.1 NaN 16334 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20355 83.459 NaN 163450 35 0 28867 0.261 + 10134 IFLPILRTGF 10 45 588.8604908885285 1175.7064288438569 2 588.8612060546875 MULTI HCD FTMS 0 0 0 20347 60724.6796875 0.6780016152866585 4 -0.12140655517578125 8 Unmodified _IFLPILRTGF_ ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7 16.149105407346934 0.3600587335443843 2 {I|L}{[QN]|[E{I|L}]|[KN]} 3 8 20.458 0 0 1.74 0 0 802.4704191776444 0 802.4704191776444 0 14.973024840566467 0 0 0 1 0 0 0 {I|L}{[QN]|[E{I|L}]|[KN]} 1.74 - 28 + NaN NaN 112519.7 NaN 16335 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20356 83.462 NaN 387410 35 0 35904 0.261 -1 DVNYNSSYMY 10 80 636.2481770113259 1270.4818010894517 2 636.248046875 MULTI HCD FTMS 0 0 0 20347 114731.28125 0.434804919923982 -5 0.1377410888671875 9 Oxidation (M) _DVNYNSSYM(Oxidation (M))Y_ ENSG00000161405|ENST00000346872|IKZF3;nc|ENSG00000161405|Q9UKT9-10|IKZF3;nc|ENSG00000161405|Q9UKT9-11|IKZF3;nc|ENSG00000161405|Q9UKT9-12|IKZF3;nc|ENSG00000161405|Q9UKT9-13|IKZF3;nc|ENSG00000161405|Q9UKT9-15|IKZF3;nc|ENSG00000161405|Q9UKT9-16|IKZF3;nc|ENSG00000161405|Q9UKT9-2|IKZF3;nc|ENSG00000161405|Q9UKT9-3|IKZF3;nc|ENSG00000161405|Q9UKT9-4|IKZF3;nc|ENSG00000161405|Q9UKT9-5|IKZF3;nc|ENSG00000161405|Q9UKT9-6|IKZF3;nc|ENSG00000161405|Q9UKT9-7|IKZF3;nc|ENSG00000161405|Q9UKT9-8|IKZF3;nc|ENSG00000161405|Q9UKT9-9|IKZF3 8.155526934196011 0.43213520406898465 2 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 -1 53.175 0 0 4.1854 0 0 666.2285724186493 0 666.2285724186493 0 21.09907485591222 0 0 0 1.5 0 0.6237125054200234 0 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4.1854 - 211 NaN NaN 145954.8 NaN 16336 4018 20347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20358 83.467 NaN 2171500 35 0 633910 0.327 + 7546 FYAHIIPFL 9 70 560.813352009123 1119.612151085046 2 560.8134155273438 MULTI HCD FTMS 0 0 0 20357 1364768.75 1 0 0 1 Unmodified _FYAHIIPFL_ ENSG00000131238|ENST00000642050|PPT1;nc|ENSG00000131238|P50897-2|PPT1 67.41302359171755 0.009925318700911543 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HH{I|L}{I|L}P{M(Oxidation (M))|F} 8 3 57.763 0 0 5.1592 0 0 0 128.07188854101267 128.07188854101267 41.388180685707574 0 0 0 0 1.6643943297944483 1.6989700043360187 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HH{I|L}{I|L}P{M(Oxidation (M))|F} 5.1592 - 736 NaN NaN 424755.4 NaN 16337 4019 20357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20359 83.472 NaN 564020 35 0 18144 0.261 -1 0 108 545.317042992181 1088.6195330511619 2 545.3171997070312 MULTI HCD FTMS 0 0 0 20357 294862.125 0.32729233615486725 27 -0.7408370971679688 2 NaN NaN 2 VVN{I|L}DT{M(Oxidation (M))|F} 7 -1 43.965 0 0 4.0386 0 0 282.1704780551568 0 282.1704780551568 0 24.64489143180519 0 0 0 0.4247425010840047 0 0.8851518780601924 0.23965182871044374 VVN{I|L}DT{M(Oxidation (M))|F} 4.0386 - 1716 + NaN NaN 178461.2 NaN 16338 4019 20357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20360 83.475 NaN 402720 35 0 33760 0.261 + 20876 PILWRFKF 8 100 553.8301378904499 NaN 0 553.8302001953125 PEAK HCD FTMS 0 0 0 20357 213547.640625 0.8489427169771661 2 -0.055755615234375 3 Unmodified _PILWRFKF_ REV__ENSG00000146426|ENST00000682666|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-2|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-3|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2;REV__nc|ENSG00000146426|Q8IVF5-5|TIAM2 5.760428011301431 0.38822285293237185 2 Y{M(Oxidation (M))|F} 2 -1 7.9588 0 0 0.71983 0 0 132.23974270754644 660.2871187799436 792.5268614874901 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 0.71983 - 47 + NaN NaN 168178.3 NaN 16339 4019 20357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20361 83.479 NaN 250140 35 0 55450 0.261 + 18377 MPMNVADLI 9 49 502.2507094406331 1002.4868659480662 2 502.2513122558594 MULTI HCD FTMS 0 0 0 20357 145858.671875 0.9368057029513787 -4 0.114898681640625 4 Unmodified _MPMNVADLI_ ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2 29.081581746732265 0.1154664336125038 2 CAD{I|L}{I|L} 5 5 46.999 0 0 4.6883 0 0 469.23298842597814 0 469.23298842597814 0 25.572586722802356 0 0 0 1.4247425010840047 0 0 0 CAD{I|L}{I|L} 4.6883 - 53 NaN NaN 129834.7 NaN 16340 4019 20357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20362 83.482 NaN 219910 35 0 23770 0.261 + 4029 ERVGNKKV 8 64 465.27998901879675 928.5454251043935 2 465.2801208496094 MULTI HCD FTMS 0 0 0 20357 94740.984375 0.7137124098549239 -4 0.114898681640625 5 Unmodified _ERVGNKKV_ tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F}Y 2 8 7.9588 0 0 0.85713 0 0 129.2267448956191 486.1633394830688 615.3900843786879 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 0.85713 - 17 + NaN NaN 131089.7 NaN 16341 4019 20357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20363 83.485 NaN 176210 35 0 16615 0.261 + 5373 FGLGACHTF 9 61 476.7207962601471 951.4270395870942 2 476.72088623046875 MULTI HCD FTMS 0 0 0 20357 47015.14453125 0.4485199584477563 7 -0.1933135986328125 6 Unmodified _FGLGACHTF_ REV__ENST00000566982.1_1_16:75263411-75272069:-|nuORF 4.75600775471527 0.31496297302216103 2 C[{M(Oxidation (M))|F}T] 3 -1 6.1709 0 0 0.6486 0 0 582.2989705947099 0 582.2989705947099 0 1.5668186536885305 0 0 0 0 0 0.3494850021680094 0 C[{M(Oxidation (M))|F}T] 0.6486 - 21 + NaN NaN 136747.8 NaN 16342 4019 20357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20365 83.49 NaN 1202500 35 0 47580 0.327 + 23893 RSSKQLVDI 9 97 523.3037994738958 1044.5930460145914 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20364 1497637.875 0.676070460144914 24 -0.6690216064453125 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 2 Q 1 8 10.485 0 0 1.0037 0 0 546.325613545575 367.1967901570848 913.5224037026599 0 0 0 0 0 0.5 0 0 0 + Q 1.0037 + + 75 + NaN NaN 296834.8 NaN 16343 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20366 83.495 NaN 255700 35 0 38724 0.261 + 7451 FVTSIDVVL 9 45 496.7868472454244 991.5591415576488 2 496.7869567871094 MULTI HCD FTMS 0 0 0 20364 100147.8828125 0.09316580450814811 8 -0.22618865966796875 2 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 48.345845343767074 0.03388484103555672 2 DVV{I|L} 4 5 55.433 0 0 5.5905 0 0 547.2999542131953 0 547.2999542131953 0 48.44335023848103 0 0 0 1.5 0 0.8494850021680094 0 + DVV{I|L} 5.5905 + + 49 NaN NaN 130295.3 NaN 16344 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20367 83.498 NaN 781900 35 0 107920 0.261 -1 LHRCVNIIF 9 67 586.3246274015901 1170.63470186998 2 586.3253173828125 MULTI HCD FTMS 0 0 0 20364 106569.8046875 0.38592641510138587 -1 0.02286529541015625 3 Carbamidomethyl (C) _LHRC(Carbamidomethyl (C))VNIIF_ ENPP2|p.V354I|1|0.08|ENSG00000136960|chr8:119593773-119593773|C/T|missense_variant 28.486842064014134 0.11819662193267319 2 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 8 -1 65.158 0 0 5.566 0 0 132.11797422724527 0 132.11797422724527 0 45.984265273494884 0 0 0 1.5 0 0 0.3807196863200844 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 5.566 - 1148 + NaN NaN 208156 NaN 16345 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20368 83.501 NaN 646940 35 0 72712 0.264 -1 DYDLCASCYE 10 74 432.490328087775 1294.449154863525 3 432.49017333984375 MULTI HCD FTMS 0 0 0 20364 136279.734375 0.5868306787618017 -1 0.02286529541015625 4 2 Carbamidomethyl (C) _DYDLC(Carbamidomethyl (C))ASC(Carbamidomethyl (C))YE_ ENSG00000176407|ENST00000409785|KCMF1 3.5870582119611467 0.4563168352879256 2 PY[DN]{M(Oxidation (M))|F} 5 -1 39.425 0 0 3.0457 0 0 0 655.1744478815061 655.1744478815061 18.455612550363796 0 0 0 0 0.7742275032520141 1.3979400086720375 0 0 PY[DN]{M(Oxidation (M))|F} 3.0457 - 23 + NaN NaN 187234.2 NaN 16346 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20369 83.505 NaN 294310 35 0 25670 0.261 + 9906 ICKEKAAA 8 47 417.23243976514647 NaN 0 417.2394714355469 PEAK HCD FTMS 0 0 0 20364 7605.5751953125 0.49423172759557027 -1 0.02286529541015625 5 Unmodified _ICKEKAAA_ REV__ENST00000505030.5_1_5:87962375-87962516:-|nuORF 5.230669730166228 0.38822285293237185 2 P 1 -1 3.0989 0 0 0.37227 0 0 460.2455364133023 272.12470422916255 732.3702406424649 0 0 0 0 0 0 0 0 0 P 0.37227 - 5 + NaN NaN 150479.4 NaN 16347 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20370 83.508 NaN 204310 35 0 22787 0.261 -1 FPTVVIYVM 9 73 542.7911424624269 1083.5677319916538 2 542.80810546875 MULTI HCD FTMS 0 0 0 20364 8268.7861328125 0.015400060287538705 50 -1.014190673828125 6 Oxidation (M) _FPTVVIYVM(Oxidation (M))_ ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1 16.942295170755138 0.21397866736869717 2 YV{M(Oxidation (M))|F} 3 -1 33.984 0 0 3.1364 0 0 656.3902550402851 0 656.3902550402851 0 24.06295947543775 0 0 0 1.2302046884880937 0 0 0 YV{M(Oxidation (M))|F} 3.1364 + + 125 + NaN NaN 142287.4 NaN 16348 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20371 83.511 NaN 156170 35 0 11405 0.262 + 28202 TKSTKKSA 8 58 425.75279697779575 849.4910410223915 2 425.7527160644531 MULTI HCD FTMS 0 0 0 20364 38035.6875 0.2311028748254945 -4 0.1081390380859375 7 Unmodified _TKSTKKSA_ REV__ENSG00000147010|ENST00000397821|SH3KBP1;REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1;REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 0 0.5419923896992614 2 E 1 -1 4.6041 0 0 0.54198 0 0 588.373164901101 129.05555139713127 717.4287162982322 0 0 0 0 0 0 0 0 0 E 0.54198 - 18 + NaN NaN 112698.2 NaN 16349 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20372 83.515 NaN 248660 35 0 23759 0.261 + 19550 NSPMESADFYE 11 62 645.2531567157284 1288.4917604982568 2 645.252685546875 MULTI HCD FTMS 0 0 0 20364 86525.453125 0.7910316033154987 -2 0.05573272705078125 8 Unmodified _NSPMESADFYE_ ENST00000425420.2_19:33792364-33793425:-|nuORF;nc|ENSG00000245848|P49715-4|CEBPA 11.494710602746466 0.35692862141139436 2 E{[CP]|[EA]}AAEY{M(Oxidation (M))|F} 8 8 45.954 0 0 3.5665 0 0 360.1314917104032 0 360.1314917104032 0 20.01139416000356 0 0 0 1.8494850021680094 0 1.7104093769761874 0 E{[CP]|[EA]}AAEY{M(Oxidation (M))|F} 3.5665 - 171 NaN NaN 128926.2 NaN 16350 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20373 83.518 NaN 254960 35 0 70299 0.263 -1 0 61 510.81304677114326 1019.6115406090865 2 510.8134765625 MULTI HCD FTMS 0 0 0 20364 57157.59765625 0.25091487800289086 12 -0.34099578857421875 9 NaN NaN 2 E{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.84184 0 0 132.1971251811553 608.3032721331804 740.5003973143357 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 0.84184 - 55 + NaN NaN 126172.8 NaN 16351 4020 20364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20375 83.523 NaN 6417200 35 0 953890 0.327 + 21587 PYNDYFEYF 9 81 629.2586630593668 1256.5027731855334 2 629.259033203125 MULTI HCD FTMS 0 0 0 20374 5850702.5 1 0 0 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 134.295615338601 0.00034446139420701925 2 QDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 7 3 96.257 0 0 7.6607 0 0 246.09985549140782 0 246.09985549140782 0 61.79848230889471 0 0 0 2.274227503252014 0 1.5774509799928715 1.566901560044258 QDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 7.6607 - 2292 NaN NaN 656645.1 NaN 16352 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20376 83.527 NaN 686640 35 0 73550 0.261 + 7641 FYINTGTLQF 10 67 602.3051600694349 1202.5957672056697 2 602.30615234375 MULTI HCD FTMS 0 0 0 20374 465417.59375 0.5566663402425606 3 -0.08509063720703125 2 Unmodified _FYINTGTLQF_ ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant 114.4966697963812 4.563610280778346E-05 2 [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 96.196 0 0 7.999 7.999 91.234 0 0 0 7.269987279362624 71.34048173655316 7.269987279362624 9.164539485499247 0 2.6549471895720984 0 1.9291746928241125 0 + + [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTGT{I|L}[AG]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]TGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NTG[Q{I|L}]T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]TGT{I|L}[AG]{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}GGTG[Q{I|L}]T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}E[HA]TGT{I|L}Q{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}NT[RP][RH] 7.999;7.237;7.237;6.4779;5.7738;5.5643;5.0117;4.8023;3.9934;3.6328 +;-;-;-;-;-;-;-;-;- + 2441 NaN NaN 199685.4 NaN 16353 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20377 83.531 NaN 735470 35 0 53273 0.261 + 19540 NSKNRLRVF 9 106 567.3301088041935 1132.645664675187 2 567.330322265625 MULTI HCD FTMS 0 0 0 20374 381701.5625 0.9190459730279651 -3 0.088623046875 3 Unmodified _NSKNRLRVF_ REV__ENSG00000160789|ENST00000368300|LMNA;REV__ENST00000368298.2_1_1:156104977-156106341:+|nuORF;REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF;REV__nc|ENSG00000160789|P02545-2|LMNA;REV__nc|ENSG00000160789|P02545-3|LMNA;REV__nc|ENSG00000160789|P02545-4|LMNA;REV__nc|ENSG00000160789|P02545-5|LMNA;REV__nc|ENSG00000160789|P02545-6|LMNA 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 26.186 0 0 2.3119 0 0 558.4362053019432 0 558.4362053019432 0 13.421415427712269 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3119 - 308 + NaN NaN 199763.9 NaN 16354 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20378 83.534 NaN 492630 35 0 71626 0.261 + 13598 KYPENFFLL 9 71 585.8131605635726 1169.6117681939452 2 585.8134155273438 MULTI HCD FTMS 0 0 0 20374 295515.28125 0.0015021855707953056 296 -6.912841796875 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 34.93206674587334 0.08860942999206235 2 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 8 6 53.907 0 0 4.6089 0 0 131.09472078820733 0 131.09472078820733 0 35.49040748309551 0 0 0 0.6989700043360187 0 0 0.3252574989159953 KMVEC(Carbamidomethyl (C)){I|L}{I|L}{M(Oxidation (M))|F} 4.6089 - 1260 + NaN NaN 166398.9 NaN 16355 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20379 83.538 NaN 365130 35 0 104840 0.261 -1 YVIGMVLTT 9 51 506.7722896247754 NaN 0 506.78936767578125 PEAK HCD FTMS 0 0 0 20374 8909.599609375 0.6971925776294186 1 -0.03278350830078125 5 Oxidation (M) _YVIGM(Oxidation (M))VLTT_ DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1 7.910154910731844 0.25691533546754686 2 MV{M(Oxidation (M))|F} 3 -1 14.693 0 0 1.4525 0 0 202.1304424313883 429.21174036197505 631.3421827933633 0 0 0 0 0 0 0 0 0 MV{M(Oxidation (M))|F} 1.4525 - 34 + NaN NaN 137133.9 NaN 16356 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20380 83.541 NaN 132110 35 0 24057 0.261 + -1 LCVFCGPVF 9 54 549.7586252691659 1097.5026976051317 2 549.7591552734375 MULTI HCD FTMS 0 0 0 20374 74022.0625 0.6225011780109184 -3 0.088623046875 6 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VFC(Carbamidomethyl (C))GPVF_ REV__ENSG00000163814|ENST00000296129|CDCP1;REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 9.347437153973935 0.2795965555214564 2 V{M(Oxidation (M))|F} 2 -1 29.776 0 0 2.7131 0 0 833.3528919904312 0 833.3528919904312 0 26.677353201839438 0 0 0 0.8807196863200843 0 0 0 V{M(Oxidation (M))|F} 2.7131 + + 22 NaN NaN 123428.8 NaN 16357 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20381 83.544 NaN 154770 35 0 30807 0.261 + 26194 SPSALGPFVL 10 37 494.2791750028286 986.5437970724572 2 494.279052734375 MULTI HCD FTMS 0 0 0 20374 85128.0078125 0.8100275879879592 -3 0.088623046875 7 Unmodified _SPSALGPFVL_ REV__ENST00000206474.11_2_14:23421864-23426291:-|nuORF;REV__ENST00000490506.5_1_14:23421645-23426291:-|nuORF 10.073929032068715 0.4168838835836452 2 {M(Oxidation (M))|F}V{I|L} 3 -1 36.198 0 0 3.6692 0 0 609.31059462715 0 609.31059462715 0 34.604093769761874 0 0 0 1 0 0 0 {M(Oxidation (M))|F}V{I|L} 3.6692 + + 43 NaN NaN 102790.8 NaN 16358 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20382 83.548 NaN 223350 35 0 34387 0.261 + 14565 LFIKVKANPF 10 61 588.8604908885285 1175.7064288438569 2 588.859619140625 MULTI HCD FTMS 0 0 0 20374 28780.46484375 0.3213388980095373 7 -0.19329833984375 8 Unmodified _LFIKVKANPF_ REV__tr|U7SF57|U7SF57_FUSNUCytidylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cmkPE=3SV=1 15.847184025352803 0.36288280428275715 2 {M(Oxidation (M))|F}TP[VP] 5 -1 25.758 0 0 2.1908 0 0 616.4070104933216 0 616.4070104933216 0 5.8820636030549345 0 0 0 0 0 0.805462187404089 0 {M(Oxidation (M))|F}TP[VP] 2.1908 - 56 + NaN NaN 117429.2 NaN 16359 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20383 83.551 NaN 54102 35 0 11744 0.263 + 7969 GEFYGHVP 8 26 453.2097317391929 NaN 0 453.2099609375 PEAK HCD FTMS 0 0 0 20374 30641.134765625 0.6712965589777361 -25 0.7085647583007812 9 Unmodified _GEFYGHVP_ REV__ENSG00000123843|ENST00000367078|C4BPB;REV__nc|ENSG00000123843|P20851-2|C4BPB 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97260.6 NaN 16360 4021 20374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20385 83.556 NaN 2230100 35 0 295170 0.327 -1 0 80 406.24854258882544 810.4825322444509 2 406.2485046386719 MULTI HCD FTMS 0 0 0 20384 3042739.5 0.8831370098449328 -1 0.03278350830078125 1 NaN NaN 2 P 1 -1 9.6041 0 0 1.185 0 0 590.3515183057775 120.05047022037343 710.401988526151 0 0 0 0 0 0.5 0 0 0 P 1.185 - 20 + NaN NaN 423063.8 NaN 16361 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20386 83.56 NaN 486660 35 0 69751 0.261 + 12279 KLPALFFL 8 50 474.79961005534796 947.5846671774959 2 474.79949951171875 MULTI HCD FTMS 0 0 0 20384 324672.90625 0.22714475608716278 5 -0.13433837890625 2 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 46.92087301778293 0.1468278106890452 2 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 [K{I|L}] + + 55.126 5.2288 2.168 5.8175 5.8175 63.632 0 0 0 0 34.156687756324686 0 0 0 1.8494850021680094 0 0 0 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.8175 - 61 + NaN NaN 159247.5 NaN 16362 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20387 83.564 NaN 552920 35 0 53019 0.261 + 15175 LMSLIINTF 9 93 534.2939490319458 1066.5733451306915 2 534.294677734375 MULTI HCD FTMS 0 0 0 20384 304670.75 0.09408004612124954 32 -0.7848663330078125 3 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 134.295615338601 0.00034446139420701925 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 79.196 0 0 7.4253 7.4253 92.695 0 0 0 1.7563686351756047 52.083180127605345 1.7563686351756047 12.703037561203843 0 2.3494850021680094 0 1.4124379954164592 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}GGT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}TQV{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}{I|L}[{M(Oxidation (M))|F}T]N;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}{I|L}[KS]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SK{I|L}[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S{I|L}K{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{I|L};[VP][YT]{I|L}[KS]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KT]V[DV]V{M(Oxidation (M))|F} 7.4253;6.2343;5.0813;4.9084;3.6056;3.3927;2.8889;2.1741;2.0807;2.0685 +;-;-;-;-;-;-;-;-;- + 937 NaN NaN 166892.5 NaN 16363 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20388 83.567 NaN 177390 35 0 19372 0.261 + 35354 YYALEVSYF 9 57 577.773813394787 1153.533073856374 2 578.273193359375 MULTI HCD FTMS 0 0 0 20384 31247.669921875 0.008867705373811586 52 -1.0034942626953125 4 Unmodified _YYALEVSYF_ ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F} 1 8 18.227 0 0 1.5801 0 0 988.4545501520755 0 988.4545501520755 0 1.2371250542002343 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.5801 + + 43 + NaN NaN 120879.9 NaN 16364 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20389 83.57 NaN 156020 35 0 23385 0.261 -1 FPSDLDLDMF 10 54 608.2654848472245 1214.5164167612488 2 608.2661743164062 MULTI HCD FTMS 0 0 0 20384 48421.80859375 0.6027505906438743 -6 0.1738128662109375 5 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 32.78568957990786 0.20801173326193015 2 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 58.756 0 0 4.8378 0 0 559.2618764882873 0 559.2618764882873 0 54.151603310239906 0 0 0 1.805462187404089 0 0.4247425010840047 0 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8378 + + 39 NaN NaN 107221.5 NaN 16365 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20390 83.574 NaN 69381 35 0 4782.1 0.261 + 15939 LPPELLDAPF 10 37 556.3077017937369 1110.6008506542737 2 556.3080444335938 MULTI HCD FTMS 0 0 0 20384 6412.7421875 0.1396702575779271 5 -0.13433837890625 6 Unmodified _LPPELLDAPF_ ENSG00000177595|ENST00000347755|PIDD1;ENST00000524486.5_1_11:799309-803120:-|nuORF;ENST00000527357.5_1_11:801679-803120:-|nuORF;ENST00000534525.5_1_11:799959-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-2|PIDD1;nc|ENSG00000177595|Q9HB75-3|PIDD1 3.944395688203298 0.4544253912184634 2 P{M(Oxidation (M))|F} 2 8 18.583 0 0 1.6733 0 0 848.4698824919675 0 848.4698824919675 0 18.58349385648225 0 0 0 0 0 0 0 + P{M(Oxidation (M))|F} 1.6733 + + 10 + NaN NaN 109201.7 NaN 16366 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20391 83.577 NaN 82496 35 0 11223 0.261 + 11401 IYPLLGATL 9 39 480.79202535546807 959.5694977777362 2 480.79193115234375 MULTI HCD FTMS 0 0 0 20384 16995.125 0.4921691325734424 -1 0.03278350830078125 7 Unmodified _IYPLLGATL_ ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16 60.38955033654506 0.017036522530421875 2 GAT{I|L} 4 5 41.983 0 0 4.3751 0 0 599.3667271522851 0 599.3667271522851 0 15.059034764951846 0 0 0 1.305462187404089 0 0 0 + GAT{I|L} 4.3751 + + 26 NaN NaN 104418.8 NaN 16367 4022 20384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20393 83.582 NaN 1838100 35 0 203280 0.327 -1 0 91 414.7617495201249 827.5089461070498 2 414.76177978515625 MULTI HCD FTMS 0 0 0 20392 2159465.5 0.8677460724269129 -1 0.026123046875 1 NaN NaN 2 P 1 -1 8.4113 0 0 1.0165 0 0 607.3780237211108 120.05040918521718 727.428432906328 0 0 0 0 0 0.3807196863200844 0 0 0 P 1.0165 - 37 + NaN NaN 382516 NaN 16368 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20394 83.586 NaN 616290 35 0 88299 0.261 -1 0 74 640.2495834146127 1278.4846138960254 2 640.24951171875 MULTI HCD FTMS 0 0 0 20392 557029.625 0.8707927397803807 2 -0.0524444580078125 2 NaN NaN 2 PYNDY{M(Oxidation (M))|F}E 7 -1 106.99 0 0 8.3683 0 0 0 347.1009091466633 347.1009091466633 67.79988043041621 0 0 0 0 2.4476212463643425 2 1.031234684152075 0.7742275032520141 PYNDY{M(Oxidation (M))|F}E 8.3683 - 773 + NaN NaN 180686.7 NaN 16369 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20395 83.59 NaN 788920 35 0 32910 0.263 -1 0 102 531.8170833266972 1061.6196137201944 2 531.8170776367188 MULTI HCD FTMS 0 0 0 20392 652865.8125 0.523824049609032 27 -0.727294921875 3 NaN NaN 2 D 1 -1 10.599 0 0 0.99837 0 0 61.05436311536102 882.4914769070292 943.5458400223903 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.99837 - 235 + NaN NaN 226124.1 NaN 16370 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20396 83.593 NaN 804340 35 0 65732 0.261 + 19017 NAVLFETVL 9 82 503.2844492189605 1004.554345504721 2 503.2845458984375 MULTI HCD FTMS 0 0 0 20392 238903.921875 0.6586353579926977 -1 0.026123046875 4 Unmodified _NAVLFETVL_ ENSG00000213983|ENST00000397120|AP1G2;ENST00000460049.6_1_14:24033375-24036327:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556152.1_1_14:24033689-24033869:-|nuORF 103.35351024395868 0.004027461563756449 2 {I|L}{M(Oxidation (M))|F}ETV{I|L} 6 3 64.672 0 0 6.4379 0 0 284.14805800605626 0 284.14805800605626 0 48.82068444291761 0 0 0 2.0994850021680094 0 0.7302046884880937 0 + {I|L}{M(Oxidation (M))|F}ETV{I|L} 6.4379 + + 541 NaN NaN 205964 NaN 16371 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20397 83.597 NaN 291320 35 0 42996 0.261 + 21052 PLTTFQDQLN 10 79 588.7983169114091 1175.582080889618 2 588.801025390625 MULTI HCD FTMS 0 0 0 20392 139700.453125 1 0 0 5 Unmodified _PLTTFQDQLN_ ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1;nc|ENSG00000089127|P00973-4|OAS1 14.838274106304384 0.3723198072575719 2 YY{I|L}EM 5 10 27.012 0 0 2.2977 0 0 0 473.2395834762148 473.2395834762148 0.5715163361448816 0 0 0 0 0.5 1.5228787452803376 0.3807196863200844 0 YY{I|L}EM 2.2977 - 168 NaN NaN 133689.9 NaN 16372 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20398 83.6 NaN 164670 35 0 12727 0.261 + 2526 DSRVFFFLL 9 70 572.3136869128085 1142.612820892417 2 572.3131103515625 MULTI HCD FTMS 0 0 0 20392 51947.59375 0.10520961727785987 8 -0.22301483154296875 6 Unmodified _DSRVFFFLL_ ENST00000415922.6_1_6:26635247-26635457:-|nuORF 34.10243960390752 0.09241788333544565 2 {I|L}{I|L} 2 7 24.464 0 0 2.1411 0 0 898.4327870099625 0 898.4327870099625 0 8.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.1411 + + 42 NaN NaN 118845.1 NaN 16373 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20399 83.603 NaN 471940 35 0 225010 0.261 -1 VLMKTFVII 9 60 540.3303988001484 1078.6462446670967 2 540.330322265625 MULTI HCD FTMS 0 0 0 20392 160918.734375 0.43298691461856087 6 -0.16396331787109375 7 Oxidation (M) _VLM(Oxidation (M))KTFVII_ ENST00000283206.8_1_2:112821810-112824567:+|nuORF 5.230669730166228 0.3113646817964458 2 [{I|L}V]N 3 -1 23.301 0 0 2.1602 0 0 0 749.4297279036779 749.4297279036779 18.60801848024778 0 0 0 0 0 1.5228787452803376 0 0 [{I|L}V]N 2.1602 - 27 NaN NaN 161884.8 NaN 16374 4023 20392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20401 83.608 NaN 1235700 35 0 332110 0.327 + 7547 FYAHIIPFL 9 82 560.813352009123 1119.612151085046 2 560.8132934570312 MULTI HCD FTMS 0 0 0 20400 572624.75 0.419576393436617 5 -0.13777923583984375 1 Unmodified _FYAHIIPFL_ ENSG00000131238|ENST00000642050|PPT1;nc|ENSG00000131238|P50897-2|PPT1 79.93452657146344 0.0058735632865073864 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HH{I|L}{I|L}P{M(Oxidation (M))|F} 8 3 49.742 0 0 4.4428 0 0 0 128.07122992928888 128.07122992928888 29.615903785781086 0 0 0 0 1.579689690656103 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}HH{I|L}{I|L}P{M(Oxidation (M))|F} 4.4428 - 961 NaN NaN 276016.6 NaN 16375 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20402 83.613 NaN 365710 35 0 16536 0.261 -1 0 90 545.317042992181 1088.6195330511619 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20400 266619.59375 0.2959435692295141 32 -0.759002685546875 2 NaN NaN 2 VEG{I|L} 4 -1 15.45 0 0 1.4192 0 0 65.12525504528169 622.2337130182249 687.3589680635066 0 0 0 0 0 0 0 0.28872548999643577 0 VEG{I|L} 1.4192 - 303 + NaN NaN 136414 NaN 16376 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20403 83.616 NaN 325150 35 0 145550 0.263 -1 0 55 423.275077087981 844.535601242762 2 423.2749938964844 MULTI HCD FTMS 0 0 0 20400 409773.21875 1 0 0 3 NaN NaN 2 A 1 -1 5.4846 0 0 0.64942 0 0 122.10745660704727 648.3805636041624 770.4880202112097 0 0 0 0 0 0 0 0 0 A 0.64942 - 10 + NaN NaN 136258.8 NaN 16377 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20404 83.619 NaN 349510 35 0 37880 0.261 -1 DVNYNSSYMY 10 57 636.2481770113259 1270.4818010894517 2 636.248046875 MULTI HCD FTMS 0 0 0 20400 179309.890625 0.6795428568856944 1 -0.0262603759765625 4 Oxidation (M) _DVNYNSSYM(Oxidation (M))Y_ ENSG00000161405|ENST00000346872|IKZF3;nc|ENSG00000161405|Q9UKT9-10|IKZF3;nc|ENSG00000161405|Q9UKT9-11|IKZF3;nc|ENSG00000161405|Q9UKT9-12|IKZF3;nc|ENSG00000161405|Q9UKT9-13|IKZF3;nc|ENSG00000161405|Q9UKT9-15|IKZF3;nc|ENSG00000161405|Q9UKT9-16|IKZF3;nc|ENSG00000161405|Q9UKT9-2|IKZF3;nc|ENSG00000161405|Q9UKT9-3|IKZF3;nc|ENSG00000161405|Q9UKT9-4|IKZF3;nc|ENSG00000161405|Q9UKT9-5|IKZF3;nc|ENSG00000161405|Q9UKT9-6|IKZF3;nc|ENSG00000161405|Q9UKT9-7|IKZF3;nc|ENSG00000161405|Q9UKT9-8|IKZF3;nc|ENSG00000161405|Q9UKT9-9|IKZF3 4.897010918128616 0.4493830473644964 2 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 -1 51.186 0 0 4.0288 0 0 666.2282119215758 0 666.2282119215758 0 20.334237554869503 0 0 0 1.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4.0288 - 124 NaN NaN 154756.8 NaN 16378 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20405 83.623 NaN 552900 35 0 69801 0.262 + 17911 MILELDPTF 9 63 547.7754196984221 1093.536286463644 2 547.7757568359375 MULTI HCD FTMS 0 0 0 20400 196809.640625 0.03282974459776567 42 -0.8616867065429688 5 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 112.59319219568356 0.00251905749371435 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 74.618 0 0 6.8236 6.8236 95.07 0 0 0 6.949237304209888 40.40530215043724 6.949237304209888 74.61812184018221 0 2.4802046884880937 2 0.3494850021680094 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 6.8236 + + 320 NaN NaN 171156.9 NaN 16379 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20406 83.626 NaN 213110 35 0 24794 0.261 + 21236 PRGAPIRRLD 10 79 575.8432761945854 1149.6719994559708 2 575.8431396484375 MULTI HCD FTMS 0 0 0 20400 147089.015625 0.7776924295145016 -4 0.11798095703125 6 Unmodified _PRGAPIRRLD_ ENSG00000161328|ENST00000270115|LRRC56 2.9952420565917617 0.4594494122822477 2 [Y{M(Oxidation (M))|F}]T{I|L} 4 9 21.312 0 0 1.8538 0 0 0 622.384193630052 622.384193630052 10.343181179205061 0 0 0 0 0 0 0.75 0 [Y{M(Oxidation (M))|F}]T{I|L} 1.8538 - 77 NaN NaN 138316 NaN 16380 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20407 83.629 NaN 95913 35 0 10925 0.263 + -1 CSDTDDCTYSF 11 39 438.48088387503356 1312.4208222253008 3 438.48114013671875 MULTI HCD FTMS 0 0 0 20400 69513.4765625 1 0 0 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))SDTDDCTYSF_ REV__nc|ENSG00000146414|Q149N8-5|SHPRH 0.5059551277355931 0.4167017191902429 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.2945 0 0 1147.3416881694397 0 1147.3416881694397 0 0.7918124604762511 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2945 + + 6 + NaN NaN 120603.6 NaN 16381 4024 20400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20409 83.634 NaN 1126400 35 0 43198 0.327 + 23894 RSSKQLVDI 9 89 523.3037994738958 1044.5930460145914 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20408 1236484.875 0.5581795922485444 29 -0.706298828125 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 2 Q 1 8 11.281 0 0 1.08 0 0 502.29922538196644 411.2230022568019 913.5222276387683 0 0 0 0 0 0.7302046884880937 0 0 0 + Q 1.08 + + 50 + NaN NaN 259131 NaN 16382 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20410 83.639 NaN 631050 35 0 122960 0.261 + 19953 NYGDYFNVF 9 92 569.7457706016551 1137.47698827011 2 569.7457885742188 MULTI HCD FTMS 0 0 0 20408 224746.21875 0.4404457101415495 -3 0.0785675048828125 2 Unmodified _NYGDYFNVF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 106.94017166704063 0.003441928997083001 2 [YN][DG]Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F} 9 0 + 89.063 0 0 7.8299 7.8299 91.767 0 0 0 13.89075625191822 13.89075625191822 13.89075625191822 9.208187539523749 0 2.610924374808178 1.154901959985743 0.3494850021680094 1.3807196863200843 + + [YN][DG]Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F};[YN][DG]Y{M(Oxidation (M))|F}GGV{M(Oxidation (M))|F} 7.8299;7.0203 +;- + 227 NaN NaN 191690.5 NaN 16383 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20411 83.642 NaN 296910 35 0 17985 0.261 + 3583 EKIKSLGGKF 10 89 553.8301378904499 NaN 0 553.8301391601562 PEAK HCD FTMS 0 0 0 20408 120394.9609375 0.4786211870545738 8 -0.22621917724609375 3 Unmodified _EKIKSLGGKF_ tr|U7SV17|U7SV17_FUSNUFAD-dependentproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01092PE=4SV=1 4.897010918128616 0.3359931263921593 2 Y{M(Oxidation (M))|F} 2 9 8.5835 0 0 0.77633 0 0 132.2383583003305 660.2824190729124 792.5207773732429 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 0.77633 - 90 + NaN NaN 138365 NaN 16384 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20412 83.646 NaN 788050 35 0 147510 0.261 + 24372 RYILEPFFI 9 61 599.3370691093212 1196.6595852854423 2 599.3372192382812 MULTI HCD FTMS 0 0 0 20408 245699.40625 0.12713953403532774 -4 0.11135101318359375 4 Unmodified _RYILEPFFI_ ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant 26.268140514670165 0.13340543277302316 2 [Y{I|L}]R{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L} 9 2 + 63.35 0 0 5.2939 5.2939 90.767 0 0 0 17.772336398234003 58.74606867853579 17.772336398234003 25.898255349109505 0 1.9247425010840047 1.3010299956639813 0 0 [Y{I|L}]R{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L} 5.2939;3.1297 -;- 122 NaN NaN 209268.9 NaN 16385 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20413 83.649 NaN 168880 35 0 21790 0.263 + 14676 LGTVQQKR 8 55 465.27998901879675 928.5454251043935 2 465.2798767089844 MULTI HCD FTMS 0 0 0 20408 127773.8359375 0.96255884361937 2 -0.0557708740234375 5 Unmodified _LGTVQQKR_ ENSG00000119285|ENST00000366582|HEATR1 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F}Y 2 8 7.0783 0 0 0.7623 0 0 129.2287831572549 486.1634920709594 615.3922752282143 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}Y 0.7623 - 26 + NaN NaN 114214.6 NaN 16386 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20414 83.652 NaN 141060 35 0 18266 0.261 + 7452 FVTSIDVVL 9 43 496.7868472454244 991.5591415576488 2 496.786865234375 MULTI HCD FTMS 0 0 0 20408 105506.4375 0.09815077318089108 13 -0.367340087890625 6 Unmodified _FVTSIDVVL_ ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 34.10243960390752 0.09241788333544565 2 {I|L}DVV{I|L} 5 4 52.206 0 0 5.2651 0 0 434.2285328595719 0 434.2285328595719 0 47.60213141451892 0 0 0 1.5 0 0.4247425010840047 0 + {I|L}DVV{I|L} 5.2651 + + 82 NaN NaN 128385.8 NaN 16387 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20415 83.656 NaN 231950 35 0 74157 0.261 + 5034 FDIPEGELL 9 54 516.7661232790725 1031.517693624945 2 516.76611328125 MULTI HCD FTMS 0 0 0 20408 94300.859375 0.4926198703276857 -3 0.0785675048828125 7 Unmodified _FDIPEGELL_ ENST00000362042.7_1_17:46137574-46137715:+|nuORF 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 34.693 0 0 3.3633 0 0 640.2698841779312 0 640.2698841779312 0 30.088643834802156 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.3633 - 25 NaN NaN 127386.9 NaN 16388 4025 20408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20417 83.661 NaN 3300300 35 0 502590 0.327 + 21588 PYNDYFEYF 9 82 629.2586630593668 1256.5027731855334 2 629.2589111328125 MULTI HCD FTMS 0 0 0 20416 2862634.25 0.48928043256344 5 -0.1443634033203125 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 122.17920374332846 0.0010792739174387011 2 QDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 7 3 91.961 0 0 7.3188 0 0 246.09971816230626 0 246.09971816230626 0 59.96661994673893 0 0 0 2.274227503252014 0 1.2416440611282626 1.5356668758921828 QDY{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 7.3188 - 684 NaN NaN 443756.7 NaN 16389 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20418 83.665 NaN 794640 35 0 114850 0.261 + 21589 PYNDYFEYF 9 64 629.2586630593668 1256.5027731855334 2 630.7631225585938 MULTI HCD FTMS 0 0 0 20416 189485.21875 0.40528230174458096 5 -0.1443634033203125 2 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 24.990960013464015 0.14443998892849796 2 YYYY{M(Oxidation (M))|F}E 6 5 47.942 0 0 3.8155 0 0 0 325.1190796638695 325.1190796638695 37.48417080392825 0 0 0 0 1.4163865622122673 0 1.1382104921644451 0 YYYY{M(Oxidation (M))|F}E 3.8155 - 155 + NaN NaN 210576.1 NaN 16390 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20419 83.669 NaN 301420 35 0 25457 0.264 -1 MLGKGVVGG 9 63 417.23195437378814 NaN 0 417.2393493652344 PEAK HCD FTMS 0 0 0 20416 9790.6083984375 1 0 0 3 Oxidation (M) _M(Oxidation (M))LGKGVVGG_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12 4.75600775471527 0.27219989241163056 2 P 1 -1 3.0989 0 0 0.37227 0 0 460.2438637262888 272.1249178522094 732.3687815784982 0 0 0 0 0 0 0 0 0 P 0.37227 - 3 + NaN NaN 142008.4 NaN 16391 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20420 83.672 NaN 164850 35 0 15216 0.261 + 7642 FYINTGTLQF 10 46 602.3051600694349 1202.5957672056697 2 602.3055419921875 MULTI HCD FTMS 0 0 0 20416 92355.3359375 0.11046231932051957 8 -0.21623992919921875 4 Unmodified _FYINTGTLQF_ ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant 61.08992128646608 0.03745793995309655 2 [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F} 10 0 + 47.796 0 0 3.9744 3.9744 90.074 0 0 0 3.1817302081888954 27.350227980532793 3.1817302081888954 47.795540574256776 0 2.3424778212679485 0 0.4247425010840047 0 + + [Y{M(Oxidation (M))|F}]{I|L}NTGT{I|L}Q{M(Oxidation (M))|F} 3.9744 + + 429 NaN NaN 115949.2 NaN 16392 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20421 83.675 NaN 318560 35 0 54693 0.261 -1 FPAEFAMYL 9 67 552.7565596422272 1103.4985663512543 2 552.7576904296875 MULTI HCD FTMS 0 0 0 20416 144349.46875 0.6562153699042061 -3 0.07865142822265625 5 Oxidation (M) _FPAEFAM(Oxidation (M))YL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 39.957323273324995 0.06554068735427583 2 E{M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 6 -1 52.396 0 0 4.7482 0 0 315.15843398261876 0 315.15843398261876 0 37.791681396006 0 0 0 1.7614393726401687 0 0 0 E{M(Oxidation (M))|F}A{M(Oxidation (M))|F}Y{I|L} 4.7482 + + 160 NaN NaN 146423.2 NaN 16393 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20422 83.679 NaN 182890 35 0 13019 0.263 + 28203 TKSTKKSA 8 60 425.75279697779575 849.4910410223915 2 425.7527770996094 MULTI HCD FTMS 0 0 0 20416 90359.7890625 0.5490214162940797 2 -0.0557403564453125 6 Unmodified _TKSTKKSA_ REV__ENSG00000147010|ENST00000397821|SH3KBP1;REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1;REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1 0 0.5419923896992614 2 E 1 -1 5.4846 0 0 0.64563 0 0 588.3731343835228 129.05561243228752 717.4287468158103 0 0 0 0 0 0 0 0 0 E 0.64563 - 18 + NaN NaN 129805.5 NaN 16394 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20423 83.682 NaN 148870 35 0 26661 0.261 + 21894 QDENMDIDFY 10 51 645.2531567157284 1288.4917604982568 2 645.2532348632812 MULTI HCD FTMS 0 0 0 20416 36328.140625 0.33211854184166867 4 -0.11151885986328125 7 Unmodified _QDENMDIDFY_ tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1 3.5964929083625545 0.45626689593999237 2 EY{M(Oxidation (M))|F} 3 8 36.925 0 0 2.8657 0 0 831.3071766584 0 831.3071766584 0 20.687587626244124 0 0 0 0.75 0 0.7742275032520141 0 EY{M(Oxidation (M))|F} 2.8657 - 23 NaN NaN 104786.9 NaN 16395 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20424 83.685 NaN 123060 35 0 9495.3 0.263 + 19019 NAVYLIDAF 9 44 513.2693928132816 1024.524232693363 2 514.27587890625 MULTI HCD FTMS 0 0 0 20416 43028.10546875 0.9710602714935956 1 -0.02956390380859375 8 Unmodified _NAVYLIDAF_ REV__ENSG00000146410|ENST00000420702|MTFR2 11.640296217721598 0.25978676193971967 2 {[QG]|[NA]}V{I|L} 4 -1 20.662 0 0 2.0167 0 0 0 624.2688975705693 624.2688975705693 5.177287669604311 0 0 0 0 0 1.0969100130080565 0 0 {[QG]|[NA]}V{I|L} 2.0167 - 30 NaN NaN 102822.2 NaN 16396 4026 20416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20426 83.69 NaN 791970 35 0 241920 0.327 + 10334 ILPPTSYIF 9 87 525.7971385926352 1049.5797242520703 2 525.78076171875 MULTI HCD FTMS 0 0 0 20425 83893.984375 0.2049767460540216 10 -0.28864288330078125 1 Unmodified _ILPPTSYIF_ ENST00000473764.5_1_X:48755552-48755627:+|nuORF 30.224811164608877 0.11021837014094292 2 VDTKY{I|L}{M(Oxidation (M))|F} 7 5 43.206 0 0 4.1165 0 0 165.11342669044217 0 165.11342669044217 0 28.05539484601134 0 0 0 1.1237125054200234 0 0.3252574989159953 0 VDTKY{I|L}{M(Oxidation (M))|F} 4.1165 - 319 + NaN NaN 220043.1 NaN 16397 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20427 83.695 NaN 719050 35 0 50063 0.261 + 19541 NSKNRLRVF 9 108 567.3301088041935 1132.645664675187 2 567.329833984375 MULTI HCD FTMS 0 0 0 20425 259512.796875 0.6248446806323803 3 -0.0819549560546875 2 Unmodified _NSKNRLRVF_ REV__ENSG00000160789|ENST00000368300|LMNA;REV__ENST00000368298.2_1_1:156104977-156106341:+|nuORF;REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF;REV__nc|ENSG00000160789|P02545-2|LMNA;REV__nc|ENSG00000160789|P02545-3|LMNA;REV__nc|ENSG00000160789|P02545-4|LMNA;REV__nc|ENSG00000160789|P02545-5|LMNA;REV__nc|ENSG00000160789|P02545-6|LMNA 7.910154910731844 0.2910521888787154 2 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 27.981 0 0 2.4704 0 0 445.3461174113182 0 445.3461174113182 0 14.881791192767544 0 0 0 0 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4704 - 409 + NaN NaN 202709.8 NaN 16398 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20428 83.698 NaN 138100 35 0 14129 0.261 + 6813 FPSFLTNSL 9 44 513.2693928132816 1024.524232693363 2 513.2684936523438 MULTI HCD FTMS 0 0 0 20425 74625.0234375 0.8050875414427785 1 -0.02617645263671875 3 Unmodified _FPSFLTNSL_ ENSG00000101639|ENST00000506447|CEP192 41.8396318013385 0.056899836730939755 2 TNS{I|L} 4 5 49.24 0 0 4.8062 0 0 591.3056510123447 0 591.3056510123447 0 39.776296993281406 0 0 0 1 0 0.3807196863200844 0.3494850021680094 + TNS{I|L} 4.8062 + + 48 NaN NaN 111967.7 NaN 16399 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20429 83.702 NaN 77695 35 0 13982 0.261 + 343 AGTVWLEVL 9 30 494.2791750028286 986.5437970724572 2 494.2791748046875 MULTI HCD FTMS 0 0 0 20425 45682.328125 0.4346859161355199 3 -0.0819549560546875 4 Unmodified _AGTVWLEVL_ GBA2|p.G490A|1|0.12|ENSG00000070610|chr9:35739741-35739741|C/G|missense_variant 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}V{I|L} 3 7 31.198 0 0 3.1623 0 0 609.3129749982437 0 609.3129749982437 0 25.255762612236907 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}V{I|L} 3.1623 - 14 NaN NaN 107135 NaN 16400 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20430 83.705 NaN 163470 35 0 39639 0.261 + -1 LCVFCGPVF 9 59 549.7586252691659 1097.5026976051317 2 549.758544921875 MULTI HCD FTMS 0 0 0 20425 90278.65625 0.7592137798763411 3 -0.0819549560546875 5 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VFC(Carbamidomethyl (C))GPVF_ REV__ENSG00000163814|ENST00000296129|CDCP1;REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 14.581692164780916 0.23437375358055648 2 V{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.8218 0 0 833.3554635736849 0 833.3554635736849 0 27.47425010840047 0 0 0 1 0 0 0 V{M(Oxidation (M))|F} 2.8218 + + 16 + NaN NaN 132691.8 NaN 16401 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20431 83.708 NaN 110970 35 0 10644 0.261 + 34056 YNGDFFDWP 9 54 580.7367962080702 1159.4590394829404 2 580.7366333007812 MULTI HCD FTMS 0 0 0 20425 57849.78515625 0.8621870182432967 -1 0.02956390380859375 6 Unmodified _YNGDFFDWP_ ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF 11.640296217721598 0.25978676193971967 2 V{M(Oxidation (M))|F} 2 8 27.206 0 0 2.3465 0 0 895.3071766584 0 895.3071766584 0 25.9471653193118 0 0 0 0.7742275032520141 0 0 0 V{M(Oxidation (M))|F} 2.3465 - 20 NaN NaN 103913.1 NaN 16402 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20432 83.711 NaN 144470 35 0 15563 0.261 + 27963 TFDAQIVII 9 60 510.2910861276897 1018.5676193221794 2 510.29254150390625 MULTI HCD FTMS 0 0 0 20425 57912.69921875 0.9516696302465265 -2 0.0557708740234375 7 Unmodified _TFDAQIVII_ ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;nc|ENSG00000103342|P15170|GSPT1 22.736283301280096 0.1639198954644489 2 {I|L}V{I|L}{I|L} 4 5 40.79 0 0 4.0046 0 0 562.2381458966812 0 562.2381458966812 0 35.127881306118454 0 0 0 1.4247425010840047 0 0 0 + {I|L}V{I|L}{I|L} 4.0046 + + 35 NaN NaN 115586.1 NaN 16403 4027 20425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20434 83.716 NaN 1289600 35 0 161010 0.327 -1 0 77 406.24854258882544 810.4825322444509 2 406.24853515625 MULTI HCD FTMS 0 0 0 20433 1632901.125 0.4739398219614025 5 -0.1442718505859375 1 NaN NaN 2 P 1 -1 9.6041 0 0 1.185 0 0 590.3515945997228 120.05040155582265 710.4019961555455 0 0 0 0 0 0.5 0 0 0 P 1.185 - 18 + NaN NaN 300182.2 NaN 16404 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20435 83.721 NaN 931700 35 0 104180 0.261 -1 0 80 414.7617495201249 827.5089461070498 2 414.76177978515625 MULTI HCD FTMS 0 0 0 20433 1377795.125 0.5536445515465275 4 -0.11480712890625 2 NaN NaN 2 P 1 -1 8.4113 0 0 1.0165 0 0 607.3779932035327 120.05056940250233 727.428562606035 0 0 0 0 0 0.3807196863200844 0 0 0 P 1.0165 - 30 + NaN NaN 235192.2 NaN 16405 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20436 83.724 NaN 472730 35 0 32058 0.261 + 15176 LMSLIINTF 9 94 534.2939490319458 1066.5733451306915 2 534.2945556640625 MULTI HCD FTMS 0 0 0 20433 267286.4375 0.08253605036776417 38 -0.75347900390625 3 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 92.65332237495696 0.004456439685314431 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 0 + 65.314 0 0 6.1237 6.1237 90.387 0 0 0 2.5532655417366357 46.580306233405295 2.5532655417366357 12.703037561203843 0 2.25 0 1.1237125054200234 0.3494850021680094 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}NT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}GGT{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}T{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}T{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F};[Y{I|L}][PS]{I|L}T{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}TD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}T{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}{I|L}[YG]AA;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}K[DV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[TV]|[{I|L}S]}{I|L}T[MT]AA 6.1237;4.9327;4.5312;4.2323;3.4525;3.2229;3.1536;2.6832;2.008;1.7258 +;-;-;-;-;-;-;-;-;- + 1061 NaN NaN 186236 NaN 16406 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20437 83.728 NaN 367000 35 0 40982 0.261 + 13599 KYPENFFLL 9 69 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 20433 184435.484375 0.0009375363676587133 303 -7.032257080078125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 40.23920728925047 0.06424668180817725 2 N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 4 52.862 0 0 4.5196 0 0 517.2528553693375 0 517.2528553693375 0 22.64014361800122 0 0 0 1.586696871556164 0 0 0.3807196863200844 + N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.5196 + + 761 NaN NaN 162742.8 NaN 16407 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20438 83.731 NaN 415070 35 0 35104 0.261 + 21050 PLTTEPHSPTP 11 79 588.7983169114091 1175.582080889618 2 589.298828125 MULTI HCD FTMS 0 0 0 20433 135862.734375 0.6865606412688938 -1 0.02617645263671875 5 Unmodified _PLTTEPHSPTP_ REV__ENSG00000184956|ENST00000421673|MUC6 24.020572477871973 0.2477903762158293 2 [{I|L}P]TT{M(Oxidation (M))|F} 5 -1 29.055 0 0 2.4715 0 0 0 613.2578981105743 613.2578981105743 9.014778379785895 0 0 0 0 0 1.3010299956639813 0.5866968715561641 0 [{I|L}P]TT{M(Oxidation (M))|F} 2.4715 - 785 NaN NaN 173147.7 NaN 16408 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20439 83.734 NaN 202080 35 0 26173 0.262 + 12280 KLPALFFL 8 36 474.79961005534796 947.5846671774959 2 474.7994079589844 MULTI HCD FTMS 0 0 0 20433 140307.53125 0.09816070066047657 11 -0.31500244140625 6 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 38.15118350030904 0.25467990583502337 2 [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 0 + 41.107 0 0 4.3381 4.3381 90.292 0 0 0 0.18954998148707602 25.622600263328295 0.18954998148707602 41.107150328368576 0 1.774227503252014 0 0 0 + + [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4.3381 + + 43 NaN NaN 122587.9 NaN 16409 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20440 83.738 NaN 139970 35 0 16067 0.261 -1 FPSDLDLDMF 10 44 608.2654848472245 1214.5164167612488 2 608.26611328125 MULTI HCD FTMS 0 0 0 20433 80334.734375 1 0 0 7 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 26.268140514670165 0.2654086933305545 2 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 53.443 0 0 4.4004 0 0 559.2651234357437 0 559.2651234357437 0 53.44335023848103 0 0 0 1.6989700043360187 0 0 0 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4004 + + 35 NaN NaN 110130.1 NaN 16410 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20441 83.741 NaN 219190 35 0 19107 0.261 + 33514 YIEGLYYSF 9 66 577.773813394787 1153.533073856374 2 577.7743530273438 MULTI HCD FTMS 0 0 0 20433 26321.083984375 0.005115628755602641 58 -1.011688232421875 8 Unmodified _YIEGLYYSF_ ENSG00000164626|ENST00000359534|KCNK5 26.88365393820708 0.12808753336095696 2 VS{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 6 6 46.987 0 0 4.0733 0 0 405.18982542063014 0 405.18982542063014 0 19.46440244762421 0 0 0 1 0 0.7302046884880937 0 VS{M(Oxidation (M))|F}YS{M(Oxidation (M))|F} 4.0733 - 236 + NaN NaN 126289.4 NaN 16411 4028 20433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20443 83.746 NaN 646850 35 0 26037 0.327 + 23167 RFKRDEVI 8 109 531.8041979857279 NaN 0 531.8170776367188 PEAK HCD FTMS 0 0 0 20442 17709.6328125 0.8090760247526975 -1 0.029571533203125 1 Unmodified _RFKRDEVI_ REV__ENSG00000177485|ENST00000557385|ZBTB33 15.847184025352803 0.3871869056683869 2 {I|L}TC(Carbamidomethyl (C))K 4 -1 10.099 0 0 0.95126 0 0 229.15371946152692 327.144222056633 556.2979415181599 0 0 0 0 0 0.28872548999643577 0 0.3054621874040891 0 {I|L}TC(Carbamidomethyl (C))K 0.95126 - 679 + NaN NaN 191868.4 NaN 16412 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20444 83.75 NaN 597570 35 0 110630 0.261 + 2337 DNVDVVTILM 10 76 559.7912965920087 1117.5680402508174 2 560.8134155273438 MULTI HCD FTMS 0 0 0 20442 22571.845703125 0.42605153221775577 -1 0.029571533203125 2 Unmodified _DNVDVVTILM_ REV__ENSG00000253873|ENST00000398587|PCDHGA11;REV__nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;REV__nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;REV__PCDHGA11|p.P363Vfs*30|1|0.07|ENSG00000253873|chr5:141422312-141422313|-/AGTTTGTGAA|frameshift_variant 11.494710602746466 0.4035943721457025 2 E{M(Oxidation (M))|F}P{I|L} 4 -1 29.553 0 0 2.6444 0 0 0 628.2902926080686 628.2902926080686 12.169081132677704 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}P{I|L} 2.6444 - 272 + NaN NaN 179670.3 NaN 16413 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20445 83.754 NaN 214840 35 0 71367 0.261 -1 LVLMKTFVI 9 45 540.3303988001484 1078.6462446670967 2 540.3305053710938 MULTI HCD FTMS 0 0 0 20442 92520.7265625 0.24894717254741275 12 -0.33785247802734375 3 Oxidation (M) _LVLM(Oxidation (M))KTFVI_ ENST00000283206.8_1_2:112821810-112824567:+|nuORF 2.0597508629832335 0.3354026079994024 2 S 1 -1 6.9897 0 0 0.64801 0 0 212.2434585226576 776.3277071588499 988.5711656815074 0 0 0 0 0 0 0 0 0 S 0.64801 - 18 + NaN NaN 133979.8 NaN 16414 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20446 83.757 NaN 433770 35 0 68321 0.261 + 19018 NAVLFETVL 9 78 503.2844492189605 1004.554345504721 2 503.28460693359375 MULTI HCD FTMS 0 0 0 20442 165218.84375 0.45549261580292266 5 -0.13092803955078125 4 Unmodified _NAVLFETVL_ ENSG00000213983|ENST00000397120|AP1G2;ENST00000460049.6_1_14:24033375-24036327:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556152.1_1_14:24033689-24033869:-|nuORF 57.72198328787511 0.020768266150574023 2 {I|L}{M(Oxidation (M))|F}ETV{I|L} 6 3 40.085 0 0 3.9903 0 0 284.1472051377386 0 284.1472051377386 0 25.480983180851297 0 0 0 2.594187677400525 0 0.3252574989159953 0 + {I|L}{M(Oxidation (M))|F}ETV{I|L} 3.9903 + + 122 + NaN NaN 155195.5 NaN 16415 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20447 83.761 NaN 165690 35 0 20385 0.261 -1 0 46 640.2495834146127 1278.4846138960254 2 640.2495727539062 MULTI HCD FTMS 0 0 0 20442 119215.796875 0.18636755699642116 8 -0.2328948974609375 5 NaN NaN 2 PYNDY{M(Oxidation (M))|F}E 7 -1 72.995 0 0 5.7095 0 0 0 347.1005037897094 347.1005037897094 41.79760434629635 0 0 0 0 1.305462187404089 2 0 0 PYNDY{M(Oxidation (M))|F}E 5.7095 - 142 + NaN NaN 136712.5 NaN 16416 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20448 83.764 NaN 238570 35 0 18168 0.262 + 6165 FPEILCIHL 9 77 542.7964170220234 1083.5782811108468 2 542.8080444335938 MULTI HCD FTMS 0 0 0 20442 62761.94140625 0.9303631420232776 -6 0.16396331787109375 6 Unmodified _FPEILCIHL_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 85.35673624503755 0.00464763827098139 2 {M(Oxidation (M))|F}PE{I|L}{I|L}C{I|L}H{I|L} 9 0 + 70.358 0 0 6.4932 6.4932 86.871 0 0 0 5.013487579716767 5.013487579716767 5.013487579716767 5.013487579716767 0 2.504432191740108 0 0.3252574989159953 0 + + {M(Oxidation (M))|F}PE{I|L}{I|L}C{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{I|L}C{I|L}H{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{I|L}[YR]{M(Oxidation (M))|F};[EP]{M(Oxidation (M))|F}{I|L}{I|L}C{I|L}H{I|L};[EP]{M(Oxidation (M))|F}{I|L}{I|L}[YR]{M(Oxidation (M))|F} 6.4932;6.0305;3.7671;3.3837;1.1203 +;+;-;-;- + 184 + NaN NaN 137770.6 NaN 16417 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20449 83.767 NaN 630260 35 0 100330 0.261 + 17631 LYYDAIWHF 9 75 614.2952551878867 1226.5759574425733 2 614.7955322265625 MULTI HCD FTMS 0 0 0 20442 90254.4296875 0.00795661917562187 127 -2.7181167602539062 7 Unmodified _LYYDAIWHF_ ENSG00000165272|ENST00000297991|AQP3;nc|ENSG00000165272|Q92482-2|AQP3 48.345845343767074 0.03388484103555672 2 [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F} 9 0 + 47.927 0 0 3.9074 3.9074 83.254 0 0 0 5.880456295278407 5.880456295278407 5.880456295278407 5.880456295278407 0 1.7346368802282015 2 0 0 + + [Y{I|L}]YDA{I|L}WH{M(Oxidation (M))|F};[Y{I|L}]YW{I|L}{[DA]|[EG]}H{M(Oxidation (M))|F};[YN]AWV[WE]{I|L}{M(Oxidation (M))|F};[Y{I|L}][DP]H{I|L}[VS]H{M(Oxidation (M))|F};E{[MS]|[{M(Oxidation (M))|F}A]}WVYY[H{I|L}];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V]{[TV]|[{I|L}S]}DHH{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{[SA]|[TG]}YKH{M(Oxidation (M))|F} 3.9074;3.428;3.1316;2.9403;0.96608;0.72127;0.29854 +;-;-;-;-;-;- + 709 + NaN NaN 187032.1 NaN 16418 4029 20442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20451 83.772 NaN 1004000 35 0 33701 0.327 + 23895 RSSKQLVDI 9 91 523.3037994738958 1044.5930460145914 2 523.3037719726562 MULTI HCD FTMS 0 0 0 20450 995122.75 0.44922281061646646 34 -0.6760025024414062 1 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 10.073929032068715 0.27331982688540024 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}Y{I|L} 6 7 16.704 0 0 1.5991 0 0 0 261.1354508338581 261.1354508338581 5.8631977321508835 0 0 0 0 0 1.2218487496163564 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}Y{I|L} 1.5991 - 113 NaN NaN 244074.6 NaN 16419 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20452 83.777 NaN 994530 35 0 93182 0.261 + 26141 SPMDIFDMF 9 104 567.7280993560862 1133.4416457789723 2 567.7279663085938 MULTI HCD FTMS 0 0 0 20450 312376.59375 0.5253913136166479 -21 0.5803298950195312 2 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 64.23631603340823 0.01165516075559909 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DS + + 48.175 9.6625 2.1658 4.2504 4.2504 61.263 0 0 0 0 35.07638152291939 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}DS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2504 - 275 + NaN NaN 241917.9 NaN 16420 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20453 83.78 NaN 584690 35 0 68619 0.261 + 7550 FYALVQYTL 9 83 559.3003196209501 1116.5860863087 2 559.3002319335938 MULTI HCD FTMS 0 0 0 20450 152879.96875 0.5998738858872668 2 -0.05902862548828125 3 Unmodified _FYALVQYTL_ ENSG00000205339|ENST00000379719|IPO7 41.8396318013385 0.056899836730939755 2 [Y{M(Oxidation (M))|F}]A{I|L}VYQT{I|L} 9 2 + 43.338 0 0 3.8813 3.8813 83.259 0 0 0 1.8842499412940583 5.784634594678259 1.8842499412940583 5.964015683995775 0 1.3494850021680094 0 0 0 [Y{M(Oxidation (M))|F}]A{I|L}VYQT{I|L};[Y{M(Oxidation (M))|F}]A{I|L}VQYT{I|L};[Y{M(Oxidation (M))|F}]A{I|L}VY[AG]T{I|L};[Y{I|L}]{I|L}[VS]VNY{M(Oxidation (M))|F};[Y{I|L}]{I|L}[VS]VY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[Y{I|L}]S[{I|L}V]VNY{M(Oxidation (M))|F};[Y{I|L}]S[{I|L}V]VY{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]};[Y{M(Oxidation (M))|F}]A{I|L}V[AG]YT{I|L};[Y{M(Oxidation (M))|F}][YG]{I|L}{I|L}QT{I|L};[Y{M(Oxidation (M))|F}]A[YV]{I|L}QT{I|L} 3.8813;3.3472;3.0566;2.9769;2.8941;2.6473;2.5645;2.5225;2.3841;2.1637 -;+;-;-;-;-;-;-;-;- + 807 NaN NaN 195114.6 NaN 16421 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20454 83.783 NaN 415640 35 0 40359 0.261 -1 ACAISIDVVM 10 58 547.7647875540713 NaN 0 547.775634765625 PEAK HCD FTMS 0 0 0 20450 14502.6650390625 0.9415295725310534 4 -0.1047210693359375 4 Carbamidomethyl (C),Oxidation (M) _AC(Carbamidomethyl (C))AISIDVVM(Oxidation (M))_ ENST00000550963.1_1_12:72004384-72005014:-|nuORF 20.453626601364224 0.27696038250606103 2 E{I|L}D 3 -1 18.179 0 0 1.6624 0 0 373.1799524501362 360.15620719968575 733.336159649822 0 0 0 0 0 0 0 1.0387254899964358 0 E{I|L}D 1.6624 - 110 + NaN NaN 166089.8 NaN 16422 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20455 83.787 NaN 256370 35 0 12988 0.261 -1 0 85 545.317042992181 1088.6195330511619 2 545.316650390625 MULTI HCD FTMS 0 0 0 20450 190207.09375 0.21112689215905686 38 -0.7165985107421875 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2841 0 0 923.5407346886603 0 923.5407346886603 0 2.2969624387961556 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2841 - 97 + NaN NaN 122853 NaN 16423 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20456 83.79 NaN 171330 35 0 8887 0.261 + 23839 RRTLKFSRS 9 79 575.8432761945854 1149.6719994559708 2 575.843017578125 MULTI HCD FTMS 0 0 0 20450 166067.171875 0.8780341741312204 2 -0.05902862548828125 6 Unmodified _RRTLKFSRS_ ENSG00000165406|ENST00000453424|MARCHF8 1.844237919475145 0.33703635659052655 2 D 1 9 9.6041 0 0 0.83538 0 0 61.05203423870882 970.5437105768186 1031.5957448155275 0 0 0 0 0 0.5 0 0 0 D 0.83538 - 38 + NaN NaN 108866.3 NaN 16424 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20457 83.793 NaN 243620 35 0 40778 0.261 + -1 MGYGDREM 8 51 495.6873256973373 989.3600984614746 2 495.68798828125 MULTI HCD FTMS 0 0 0 20450 118225.9765625 0.8075901684522007 -5 0.137725830078125 7 2 Oxidation (M) _M(Oxidation (M))GYGDREM(Oxidation (M))_ REV__ENSG00000141965|ENST00000269856|FEM1A 2.302733041254933 0.5385759549224092 2 AV{I|L} 3 -1 9.0411 0 0 0.91383 0 0 130.91271462877495 572.2387179010374 703.1514325298124 0 0 0 0 0 0 0 0 0 AV{I|L} 0.91383 - 42 + NaN NaN 124917.5 NaN 16425 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20458 83.797 NaN 196480 35 0 16679 0.261 + 21895 QDERLIYF 8 63 542.2775053048183 1082.5404576764365 2 542.7965087890625 MULTI HCD FTMS 0 0 0 20450 15055.1357421875 0.3764310350822498 5 -0.14095306396484375 8 Unmodified _QDERLIYF_ ENSG00000037280|ENST00000261937|FLT4;ENST00000507059.5_1_5:180043993-180056331:-|nuORF;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;nc|ENSG00000037280|P35916-3|FLT4 8.593279151180031 0.5292430274356741 2 {[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}{I|L}[YR]{M(Oxidation (M))|F} 8 2 + 36.643 0 0 3.3849 3.3849 88.747 0 0 0 14.872118693881546 14.424712680444358 14.424712680444358 31.13744417534931 0 0 0 0 0.4247425010840047 {[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L}{I|L}[YR]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[HV][WR]{[QN]|[E{I|L}]|[KN]} 3.3849;0.5086 -;- 125 + NaN NaN 112520.6 NaN 16426 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20459 83.8 NaN 133320 35 0 22537 0.261 + -1 LYTNCMHVCL 10 47 606.7656481379781 1211.5167433427562 2 606.8118896484375 MULTI HCD FTMS 0 0 0 20450 23120.419921875 0.8647350716539136 -4 0.11151885986328125 9 Oxidation (M) _LYTNCM(Oxidation (M))HVCL_ REV__ENST00000302823.7_1_2:204732513-204732561:+|nuORF 2.9952420565917617 0.4594494122822477 2 C{I|L} 2 -1 16.454 0 0 1.3581 0 0 977.4138067314917 0 977.4138067314917 0 10.969100130080562 0 0 0 0 0 0 0 C{I|L} 1.3581 + + 21 NaN NaN 117200.5 NaN 16427 4030 20450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20461 83.805 NaN 2364900 35 0 464980 0.327 + 24373 RYILEPFFI 9 76 599.3370691093212 1196.6595852854423 2 599.3372192382812 MULTI HCD FTMS 0 0 0 20460 1334765.875 0.6906875111496389 2 -0.0556488037109375 1 Unmodified _RYILEPFFI_ ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant 72.96794272382148 0.008127836904478181 2 [Y{I|L}]R{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 2 + 84.279 0 0 7.0429 7.0429 88.771 0 0 0 7.327344480616915 16.478174818886373 7.327344480616915 7.327344480616915 0 2.2134679910804405 1.154901959985743 0.7742275032520141 0 [Y{I|L}]R{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YR]{I|L}{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}REP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{I|L}EP{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}RY{I|L}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}{[VA]|[{I|L}G]}{[NV]|[RG]}[YK];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L}[VG]{[QV]|[N{I|L}]|[RA]|[KV]}[YK] 7.0429;6.4306;5.9188;5.0221;3.988;0.94607;0.025122 -;+;-;-;-;-;- + 798 NaN NaN 456131.9 NaN 16428 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20462 83.809 NaN 1307300 35 0 128690 0.261 + 21590 PYNDYFEYF 9 86 629.2586630593668 1256.5027731855334 2 629.2588500976562 MULTI HCD FTMS 0 0 0 20460 611964.8125 0.10459680910112931 10 -0.27880096435546875 2 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 89.40071534611396 0.0045416704840156395 2 [Y{I|L}][DN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}EY 8 3 63.025 0 0 5.0159 0 0 0 162.05597936869722 162.05597936869722 30.575838724013067 0 0 0 0 1.4247425010840047 1.5228787452803376 0.5501648626366046 1.305462187404089 [Y{I|L}][DN]{M(Oxidation (M))|F}{M(Oxidation (M))|F}EY 5.0159 - 822 NaN NaN 302604.6 NaN 16429 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20463 83.813 NaN 374700 35 0 141130 0.261 + -1 WMCCLSFGDQ 10 40 631.7353643911492 1261.4561758490984 2 631.7359619140625 MULTI HCD FTMS 0 0 0 20460 246624.75 0.6604169116105713 -3 0.088623046875 3 Carbamidomethyl (C),Oxidation (M) _WM(Oxidation (M))C(Carbamidomethyl (C))CLSFGDQ_ REV__ENST00000378883.5_1_20:5939284-5948099:+|nuORF 0.45834013312273997 0.47287763746706196 2 E 1 -1 6.9897 0 0 0.5541 0 0 151.01809786517316 978.3572559487374 1129.3753538139106 0 0 0 0 0 0 0 0 0 E 0.5541 - 2 + NaN NaN 142737.8 NaN 16430 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20464 83.816 NaN 538470 35 0 78319 0.261 + 7551 FYALVQYTL 9 72 559.3003196209501 1116.5860863087 2 559.7921142578125 MULTI HCD FTMS 0 0 0 20460 43002.33984375 0.32270963669703084 5 -0.13765716552734375 4 Unmodified _FYALVQYTL_ ENSG00000205339|ENST00000379719|IPO7 41.8396318013385 0.056899836730939755 2 TQ{I|L}TVYD{M(Oxidation (M))|F} 8 7 44.902 0 0 4.0214 0 0 131.09723088644597 0 131.09723088644597 0 -2.1370215271593906 -2.1370215271593906 0 0 0.8807196863200843 0 0 0 TQ{I|L}TVYD{M(Oxidation (M))|F} 4.0214 - 551 + NaN NaN 174702.5 NaN 16431 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20465 83.82 NaN 220110 35 0 10514 0.261 + 23292 RHRHSLVP 8 67 501.29065233338474 1000.5667517335695 2 501.2907409667969 MULTI HCD FTMS 0 0 0 20460 159902.171875 0.8340166021945774 -5 0.1443634033203125 5 Unmodified _RHRHSLVP_ REV__ENSG00000183671|ENST00000621141|CMKLR2 4.75600775471527 0.5349361699807423 2 Q 1 -1 9.9743 0 0 0.99686 0 0 458.27306384470074 411.22319093694495 869.4962547816457 0 0 0 0 0 0.75 0 0 0 Q 0.99686 - 41 + NaN NaN 120511.5 NaN 16432 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20466 83.823 NaN 89455 35 0 5205.2 0.261 -1 0 49 509.8037876052158 1017.5930222772316 2 509.8039245605469 MULTI HCD FTMS 0 0 0 20460 98181.1640625 0.6205695643723468 -3 0.088623046875 6 NaN NaN 2 {I|L}{[SA]|[TG]} 3 -1 5.6864 0 0 0.55881 0 0 728.4085346041471 0 728.4085346041471 0 -0.7672878367107199 -0.7672878367107199 0 0 0 0 0 0 {I|L}{[SA]|[TG]} 0.55881 - 15 NaN NaN 96384.9 NaN 16433 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20467 83.826 NaN 252440 35 0 24405 0.261 -1 MPSILADVF 9 61 504.75706431782135 1007.4995757024427 2 504.7572326660156 MULTI HCD FTMS 0 0 0 20460 36315.34375 0.36852363297793567 5 -0.13765716552734375 7 Oxidation (M) _M(Oxidation (M))PSILADVF_ ENSG00000125676|ENST00000245838|THOC2 11.640296217721598 0.25978676193971967 2 WV{M(Oxidation (M))|F} 3 -1 27.294 0 0 2.709 0 0 557.2870350568375 0 557.2870350568375 0 4.897868585481078 0 0 0 0.8252574989159953 0 0 0 WV{M(Oxidation (M))|F} 2.709 - 111 NaN NaN 128859.3 NaN 16434 4031 20460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20469 83.831 NaN 603660 35 0 205770 0.327 + 10335 ILPPTSYIF 9 70 525.7971385926352 1049.5797242520703 2 525.7805786132812 MULTI HCD FTMS 0 0 0 20468 16710.935546875 0.0408295447812544 15 -0.40314483642578125 1 Unmodified _ILPPTSYIF_ ENST00000473764.5_1_X:48755552-48755627:+|nuORF 11.640296217721598 0.25978676193971967 2 VDTKY{I|L}{M(Oxidation (M))|F} 7 5 20.766 0 0 1.9785 0 0 165.1127316916532 0 165.1127316916532 0 12.6298147240299 0 0 0 0.8424778212679485 0 0.28872548999643577 0 VDTKY{I|L}{M(Oxidation (M))|F} 1.9785 - 161 + NaN NaN 187360.9 NaN 16435 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20470 83.836 NaN 198370 35 0 77581 0.261 + 10438 IPDEADFLL 9 33 516.7661232790725 1031.517693624945 2 516.7662353515625 MULTI HCD FTMS 0 0 0 20468 96370.78125 0.5034329705731037 4 -0.11147308349609375 2 Unmodified _IPDEADFLL_ CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8 16.942295170755138 0.21397866736869717 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.445 0 0 3.4362 0 0 640.26860243965 0 640.26860243965 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.4362 + + 8 NaN NaN 116389.5 NaN 16436 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20471 83.839 NaN 256100 35 0 35782 0.261 + 5685 FPAEFAMYL 9 53 552.7565596422272 1103.4985663512543 2 552.7576293945312 MULTI HCD FTMS 0 0 0 20468 75222.71875 0.34196387861476846 3 -0.0819244384765625 3 Oxidation (M) _FPAEFAM(Oxidation (M))YL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 48.345845343767074 0.03388484103555672 2 [Y{I|L}][WE]A{M(Oxidation (M))|F}Y{I|L} 8 4 + 54.28 0 0 4.9189 4.9189 83.686 0 0 0 7.486964716146787 26.832501961453218 7.486964716146787 3.4948500216800937 0 1.1382104921644451 1.5228787452803376 0.3054621874040891 0 [Y{I|L}][WE]A{M(Oxidation (M))|F}Y{I|L};[Y{I|L}][WE]MSY{I|L};[Y{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{M(Oxidation (M))|F}Y{I|L};[Y{I|L}]{I|L}[SG][YG]{M(Oxidation (M))|F}{[QG]|[NA]};[Y{I|L}]Y[VG]{[SA]|[TG]}{M(Oxidation (M))|F}{[QG]|[NA]};[Y{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YG]{M(Oxidation (M))|F}{[QG]|[NA]} 4.9189;4.6022;4.3844;1.664;1.3306;1.0721 -;-;-;-;-;- 255 NaN NaN 125571.3 NaN 16437 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20472 83.842 NaN 325930 35 0 29316 0.261 + 5305 FFIDQANYF 9 72 582.7713738947356 1163.528194856271 2 582.7718505859375 MULTI HCD FTMS 0 0 0 20468 78339.6015625 0.6098302693131913 -1 0.02618408203125 4 Unmodified _FFIDQANYF_ ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2 103.35351024395868 0.004027461563756449 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F} 9 0 + 75.601 0 0 6.4975 6.4975 89.415 0 0 0 4.762036441594191 70.11615948493926 4.762036441594191 9.208187539523749 0 2.6237125054200234 0 0 0.7302046884880937 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]ANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQAGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]AGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DV]AAANY{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[YC]|[HE]}AAANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[DV]{[NV]|[RG]}NY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[QA]{NN|[MP]|[D{I|L}]|[EV]}NY{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{[YC]|[HE]}{[NV]|[RG]}NY{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[HN]{NN|[MP]|[D{I|L}]|[EV]}NY{M(Oxidation (M))|F} 6.4975;5.7061;5.7061;4.2909;3.1705;2.9798;2.1793;2.1354;1.9887;1.9447 +;-;-;-;-;-;-;-;-;- + 585 NaN NaN 150960.4 NaN 16438 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20473 83.846 NaN 373820 35 0 49529 0.261 + 21022 PLPPGGHLPLL 11 79 555.8369175722765 1109.659282211353 2 555.8369750976562 MULTI HCD FTMS 0 0 0 20468 56561.31640625 0.5335348009777746 3 -0.0819244384765625 5 Unmodified _PLPPGGHLPLL_ REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF 21.74664581756881 0.2676031737608615 2 {I|L}[{I|L}P]{I|L} 4 -1 24.693 0 0 2.2253 0 0 655.344041892775 0 655.344041892775 0 19.20818753952375 0 0 0 0.8494850021680094 0 0 0 {I|L}[{I|L}P]{I|L} 2.2253 + + 614 NaN NaN 144724.3 NaN 16439 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20474 83.849 NaN 225900 35 0 22893 0.261 + 11499 IYQVSYFSF 9 66 577.2820426673596 1152.5495324015192 2 577.7714233398438 MULTI HCD FTMS 0 0 0 20468 8027.177734375 0.3237883388881383 2 -0.04569244384765625 6 Unmodified _IYQVSYFSF_ ENSG00000115977|ENST00000409085|AAK1;nc|ENSG00000115977|Q2M2I8-2|AAK1 26.268140514670165 0.13340543277302316 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KSY 6 6 40.029 0 0 3.4731 0 0 0 396.15869905829055 396.15869905829055 10.912515900796716 0 0 0 0 0.8807196863200843 2 0.3252574989159953 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KSY 3.4731 - 302 NaN NaN 128505.6 NaN 16440 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20475 83.852 NaN 90634 35 0 12773 0.261 + 23008 RAQNRRLLP 9 42 562.343430263502 1122.672307593804 2 562.6773071289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RAQNRRLLP_ ENSG00000167103|ENST00000388747|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF;nc|ENSG00000167103|Q5T9C9-2|PIP5KL1 0.6014990680409731 0.3464572424761564 2 Y 1 9 2.7642 0 0 0.24622 0 0 485.5993838650914 470.9732760065063 956.5726598715977 0 0 0 0 0 0 0 0 0 Y 0.24622 - 1 + NaN NaN 108815.5 NaN 16441 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20476 83.856 NaN 98876 35 0 18737 0.261 + 20106 NYIPRFWTF 9 39 622.317034566978 1242.619516200756 2 622.3156127929688 MULTI HCD FTMS 0 0 0 20468 19375.34375 0.3834883366720452 3 -0.0819244384765625 8 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 8.745405648335112 0.2847203663274469 2 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 7 20.458 0 0 1.6463 0 0 852.4292104129642 0 852.4292104129642 0 14.973024840566467 0 0 0 1 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.6463 - 7 + NaN NaN 104370.1 NaN 16442 4032 20468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20478 83.861 NaN 369290 35 0 57654 0.327 + 21432 PVVGARRG 8 56 406.24854258882544 810.4825322444509 2 406.24847412109375 MULTI HCD FTMS 0 0 0 20477 355783.125 0.10326393211307966 10 -0.27569580078125 1 Unmodified _PVVGARRG_ ENSG00000085644|ENST00000396878|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;nc|ENSG00000085644|O14771-2|ZNF213 2.577480529830294 0.5381683276125971 2 P 1 7 8.9794 0 0 1.1079 0 0 590.3516098585119 120.0504625909789 710.4020724494908 0 0 0 0 0 0.5 0 0 0 + P 1.1079 + + 5 + NaN NaN 143665.7 NaN 16443 4033 20477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20479 83.865 NaN 422010 35 0 43438 0.261 + 456 ALPDQSFLW 9 83 538.7742277826029 1075.5339026320057 2 538.7734985351562 MULTI HCD FTMS 0 0 0 20477 96637.4921875 0.43159581252656565 -3 0.08849334716796875 2 Unmodified _ALPDQSFLW_ ENSG00000249915|ENST00000264933|PDCD6;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507841.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;nc|ENSG00000249915|O75340-3|PDCD6 85.64151623876279 0.004640175941193596 2 [DP]Q[{I|L}A]S{M(Oxidation (M))|F}{I|L}W 9 4 + 57.053 0 0 5.3046 5.3046 82.971 0 0 0 4.424464483802581 4.424464483802581 4.424464483802581 0.45824876898333855 0 1.805462187404089 0 0.3252574989159953 1.3684151806525389 [DP]Q[{I|L}A]S{M(Oxidation (M))|F}{I|L}W;[DP]{I|L}AQS{M(Oxidation (M))|F}{I|L}W;[DP][KS]PS{M(Oxidation (M))|F}{I|L}W;[{I|L}A][DP]QS{M(Oxidation (M))|F}{I|L}W;[{I|L}A][DP][AG]S{M(Oxidation (M))|F}{I|L}W;[DP][RK]D{M(Oxidation (M))|F}{I|L}[VS];[DP][AG][{I|L}A]S{M(Oxidation (M))|F}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F}S[YT]{[QN]|[E{I|L}]|[KN]};[DP][KS]A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}W;[{I|L}A][DP]QS[W{I|L}]{M(Oxidation (M))|F} 5.3046;5.262;5.0247;4.8932;3.823;3.7309;3.1761;2.7971;2.1313;1.7765 -;-;-;+;-;-;-;-;-;- + 431 NaN NaN 155385.2 NaN 16444 4033 20477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20480 83.869 NaN 87935 35 0 21431 0.261 + 4030 ERVGNKKV 8 43 465.27998901879675 928.5454251043935 2 465.2803039550781 MULTI HCD FTMS 0 0 0 20477 14554.00390625 0.10963970101738416 10 -0.27569580078125 3 Unmodified _ERVGNKKV_ tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 9 NaN NaN 106610.6 NaN 16445 4033 20477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20481 83.872 NaN 123560 35 0 6346.6 0.261 + 33825 YLIVDRDEAW 10 61 640.3202422363545 1278.6259315395089 2 641.3617553710938 MULTI HCD FTMS 0 0 0 20477 7348.58447265625 0.2950866089796328 -1 0.0294647216796875 4 Unmodified _YLIVDRDEAW_ ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1;nc|ENSG00000136193|Q12765-3|SCRN1 9.38312468134398 0.42334543440173333 2 [Y{I|L}]{I|L} 3 7 31.695 0 0 2.4788 0 0 0 886.3713898737464 886.3713898737464 21.237125054200234 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 + [Y{I|L}]{I|L} 2.4788 + + 20 NaN NaN 102972.1 NaN 16446 4033 20477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20483 83.877 NaN 905310 35 0 27228 0.327 -1 0 115 531.8170833266972 1061.6196137201944 2 531.817138671875 MULTI HCD FTMS 0 0 0 20482 505766.15625 0.4057992791927199 38 -0.6579437255859375 1 NaN NaN 2 AVY{M(Oxidation (M))|F} 4 -1 18.136 0 0 1.7083 0 0 563.3737679481111 0 563.3737679481111 0 12.629602967236018 0 0 0 0 0 0 0 AVY{M(Oxidation (M))|F} 1.7083 - 973 + NaN NaN 224275.4 NaN 16447 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20484 83.881 NaN 306270 35 0 74761 0.262 -1 0 62 414.7617495201249 827.5089461070498 2 414.76165771484375 MULTI HCD FTMS 0 0 0 20482 318572.65625 0.1280132381107948 10 -0.2823333740234375 2 NaN NaN 2 A 1 -1 8.2268 0 0 0.99417 0 0 61.05352462815785 692.4085177057249 753.4620423338828 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.99417 - 9 + NaN NaN 151418.8 NaN 16448 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20485 83.885 NaN 380590 35 0 30065 0.261 + 15177 LMSLIINTF 9 81 534.2939490319458 1066.5733451306915 2 534.2943115234375 MULTI HCD FTMS 0 0 0 20482 210657.8125 0.06504955502227089 44 -0.7231216430664062 3 Oxidation (M) _LM(Oxidation (M))SLIINTF_ ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000224411|Q14568|HSP90AA2P 72.96794272382148 0.008127836904478181 2 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 4 64.321 0 0 6.0306 0 0 460.23516261291644 0 460.23516261291644 0 47.81837850816387 0 0 0 2.1747425010840047 0 1.089136830878453 0 + {I|L}{I|L}NT{M(Oxidation (M))|F} 6.0306 + + 1051 + NaN NaN 150101.4 NaN 16449 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20486 83.888 NaN 326350 35 0 41231 0.261 + 13600 KYPENFFLL 9 69 585.8131605635726 1169.6117681939452 2 585.813720703125 MULTI HCD FTMS 0 0 0 20482 218705.625 0.001111740931761948 309 -7.215858459472656 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 63.72 0 0 5.448 5.448 86.674 0 0 0 3.6574248437336365 49.02758118237223 3.6574248437336365 9.018637558036673 0 2.0994850021680094 0 0 0.6861818737241735 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[YK]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[EP]{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{[CT]|[{M(Oxidation (M))|F}G]}{[QS]|[NT]}{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[QN]|[E{I|L}]|[KN]}N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 5.448;4.6769;4.6607;3.8896;2.8781;2.6022;2.1322;2.107 +;-;-;-;-;-;-;- + 449 NaN NaN 138704.3 NaN 16450 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20487 83.892 NaN 350210 35 0 62078 0.261 + 17520 LYTVVVYDF 9 64 559.7912965920087 1117.5680402508174 2 560.8136596679688 MULTI HCD FTMS 0 0 0 20482 20660.033203125 0.3899653983831049 4 -0.1248931884765625 5 Unmodified _LYTVVVYDF_ ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 14.838274106304384 0.23215694253501695 2 E{M(Oxidation (M))|F}P{I|L} 4 9 28.443 0 0 2.5451 0 0 0 628.2880953424436 628.2880953424436 4.006375246153908 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}P{I|L} 2.5451 - 194 + NaN NaN 137067.4 NaN 16451 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20488 83.895 NaN 521420 35 0 69609 0.261 + 29835 VESLMINDSF 10 77 577.773813394787 1153.533073856374 2 578.2880249023438 MULTI HCD FTMS 0 0 0 20482 25189.474609375 0.0071484638667625115 64 -1.1202774047851562 6 Unmodified _VESLMINDSF_ ENSG00000162994|ENST00000401408|CLHC1;ENST00000494539.5_1_2:55402928-55459402:-|nuORF;nc|ENSG00000162994|Q8NHS4-2|CLHC1 19.256988751693697 0.33098864134661865 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TH 8 6 63.274 0 0 5.4852 0 0 0 162.04929331281167 162.04929331281167 21.789857607749695 0 0 0 0 0 2 1.4291746928241125 0.28872548999643577 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TH 5.4852 - 835 NaN NaN 187124 NaN 16452 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20489 83.898 NaN 127710 35 0 8143.5 0.261 + 35663 YYISEFLKN 9 52 588.7983169114091 1175.582080889618 2 589.2979736328125 MULTI HCD FTMS 0 0 0 20482 38552.24609375 0.19481762178747702 5 -0.15450286865234375 7 Unmodified _YYISEFLKN_ ENST00000290858.10_1_16:67133987-67134095:+|nuORF 4.75600775471527 0.31496297302216103 2 {I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}] 3 7 5.6864 0 0 0.48371 0 0 737.411424705275 0 737.411424705275 0 1.7069622716897488 0 0 0 0 0 0 0 {I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}] 0.48371 - 18 NaN NaN 113905.8 NaN 16453 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20490 83.902 NaN 109700 35 0 17136 0.261 + 3301 EEFQILANSW 10 42 618.798571309308 1235.582589685416 2 618.7974243164062 MULTI HCD FTMS 0 0 0 20482 72226.1640625 1 0 0 8 Unmodified _EEFQILANSW_ ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1 23.015651743759182 0.29583137589827896 2 NA{I|L}{I|L}GA[NS]W 9 5 54.927 0 0 4.4454 0 0 291.1213551251969 0 291.1213551251969 0 47.936909460092 0 0 0 0.8807196863200843 0 0 0 NA{I|L}{I|L}GA[NS]W 4.4454 - 212 NaN NaN 113426.5 NaN 16454 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20491 83.905 NaN 135370 35 0 19014 0.261 + -1 LCVFCGPVF 9 43 549.7586252691659 1097.5026976051317 2 550.2608032226562 MULTI HCD FTMS 0 0 0 20482 33842.74609375 0.4615357364659314 7 -0.2069244384765625 9 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VFC(Carbamidomethyl (C))GPVF_ REV__ENSG00000163814|ENST00000296129|CDCP1;REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 9.347437153973935 0.2795965555214564 2 V{M(Oxidation (M))|F} 2 -1 27.831 0 0 2.5358 0 0 833.3565011713412 0 833.3565011713412 0 27.742275032520137 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 2.5358 + + 9 + NaN NaN 105929 NaN 16455 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20492 83.908 NaN 70269 35 0 12178 0.261 -1 0 40 471.35413966687264 NaN 0 471.3544006347656 PEAK HCD FTMS 0 0 0 20482 13215.7841796875 0.6850380160945143 1 -0.03623199462890625 10 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104212.1 NaN 16456 4034 20482 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20494 83.913 NaN 326070 35 0 103420 0.327 + 14656 LGKAGRAR 8 59 414.7617495201249 827.5089461070498 2 414.7617492675781 MULTI HCD FTMS 0 0 0 20493 161835.40625 0.06503092462141738 11 -0.29505157470703125 1 Unmodified _LGKAGRAR_ tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1 0.6903765706972694 0.5409681170271811 2 A 1 7 7.7866 0 0 0.94097 0 0 105.08010249092031 648.3811739557249 753.4612764466452 0 0 0 0 0 0.3807196863200844 0 0 0 + A 0.94097 + + 18 + NaN NaN 134522.8 NaN 16457 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20495 83.918 NaN 539150 35 0 62395 0.261 + -1 TIFDRQLM 8 79 520.2663465804334 NaN 0 520.2767944335938 PEAK HCD FTMS 0 0 0 20493 7699.9365234375 0.7136418053020164 1 -0.02954864501953125 2 Oxidation (M) _TIFDRQLM(Oxidation (M))_ REV__ENSG00000072803|ENST00000517395|FBXW11;REV__ENSG00000166167|ENST00000370187|BTRC;REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11;REV__nc|ENSG00000072803|Q9UKB1-3|FBXW11;REV__nc|ENSG00000072803|Q9UKB1|FBXW11;REV__nc|ENSG00000166167|Q9Y297-2|BTRC 26.88365393820708 0.3804783575113625 2 {I|L}NAPAE{I|L} 7 -1 29.884 0 0 2.8775 0 0 165.06025388243478 162.0559023492797 327.1161562317145 0 0 0 0 0 0 0 1.110924374808178 0.7742275032520141 {I|L}NAPAE{I|L} 2.8775 - 298 + NaN NaN 163877.7 NaN 16458 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20496 83.921 NaN 245450 35 0 89712 0.261 -1 VLMKTFVII 9 55 540.3303988001484 1078.6462446670967 2 540.330322265625 MULTI HCD FTMS 0 0 0 20493 60181.83203125 0.1619323310521371 18 -0.4209136962890625 3 Oxidation (M) _VLM(Oxidation (M))KTFVII_ ENST00000283206.8_1_2:112821810-112824567:+|nuORF 0.6014990680409731 0.3464572424761564 2 W 1 -1 16.99 0 0 1.5751 0 0 874.5564904940483 0 874.5564904940483 0 11.505149978319906 0 0 0 0 0 0 0 W 1.5751 - 26 + NaN NaN 129965 NaN 16459 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20497 83.924 NaN 249890 35 0 40453 0.261 + 26112 SPIVLIDEI 9 45 499.79212012251435 997.5696873118287 2 499.792236328125 MULTI HCD FTMS 0 0 0 20493 156331 0.8430644750033663 1 -0.02954864501953125 4 Unmodified _SPIVLIDEI_ tr|U7T657|U7T657_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00362PE=3SV=1 36.12702656103203 0.08312389501731911 2 {I|L}{I|L}DE{I|L} 5 4 48.628 0 0 4.8746 0 0 396.23741347480626 0 396.23741347480626 0 32.42992819099939 0 0 0 1.305462187404089 0 0 0 + {I|L}{I|L}DE{I|L} 4.8746 + + 41 NaN NaN 142692.3 NaN 16460 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20498 83.928 NaN 92498 35 0 14301 0.261 -1 0 43 423.275077087981 844.535601242762 2 423.2748718261719 MULTI HCD FTMS 0 0 0 20493 27266.09375 0.06653947232855856 11 -0.29505157470703125 5 NaN NaN 2 P 1 -1 3.0989 0 0 0.36694 0 0 343.2973943109245 401.16059290103755 744.4579872119621 0 0 0 0 0 0 0 0 0 P 0.36694 - 3 + NaN NaN 96557.4 NaN 16461 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20499 83.931 NaN 130810 35 0 7877.9 0.261 + 6166 FPEILCIHL 9 54 542.7964170220234 1083.5782811108468 2 542.80810546875 MULTI HCD FTMS 0 0 0 20493 67459.6171875 1 0 0 6 Unmodified _FPEILCIHL_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 34.10243960390752 0.09241788333544565 2 {M(Oxidation (M))|F}PE{I|L}{I|L}R[Y{M(Oxidation (M))|F}] 8 4 + 59.686 0 0 5.5082 5.5082 89.514 0 0 0 38.233134811479204 6.9897000433601875 6.9897000433601875 13.197216027710112 0 0.8494850021680094 0 0.3054621874040891 0 {M(Oxidation (M))|F}PE{I|L}{I|L}R[Y{M(Oxidation (M))|F}];{M(Oxidation (M))|F}PE{I|L}{I|L}[HC]{I|L}{I|L} 5.5082;4.2903 -;- 122 + NaN NaN 104272.5 NaN 16462 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20500 83.934 NaN 174000 35 0 15668 0.261 + 33867 YLLLMLDIL 9 67 553.8300991066263 1105.6456452800526 2 553.8302001953125 MULTI HCD FTMS 0 0 0 20493 93580.015625 0.041638734261446535 -47 1.3307418823242188 7 Unmodified _YLLLMLDIL_ REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF 5.230669730166228 0.3113646817964458 2 [Y{I|L}]Y 3 -1 17.447 0 0 1.578 0 0 0 663.4122112448136 663.4122112448136 10.457574905606752 0 0 0 0 0 1.3010299956639813 0 0 [Y{I|L}]Y 1.578 - 36 NaN NaN 128032.7 NaN 16463 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20501 83.938 NaN 96238 35 0 14781 0.261 + 4971 FATSLSIVL 9 41 475.78161376451095 949.5486745958219 2 475.78155517578125 MULTI HCD FTMS 0 0 0 20493 40330.91796875 0.5067564151734077 1 -0.02954864501953125 8 Unmodified _FATSLSIVL_ ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}N 3 8 20.802 0 0 2.1907 0 0 523.3571034162125 0 523.3571034162125 0 2.035372259137908 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}N 2.1907 - 13 NaN NaN 117036.9 NaN 16464 4035 20493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20503 83.943 NaN 877700 35 0 151370 0.327 + 24374 RYILEPFFI 9 75 599.3370691093212 1196.6595852854423 2 599.337158203125 MULTI HCD FTMS 0 0 0 20502 363869.15625 0.18828761404649452 7 -0.19368743896484375 1 Unmodified _RYILEPFFI_ ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant 26.268140514670165 0.13340543277302316 2 [Y{I|L}]R{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L} 9 2 + 60.116 0 0 5.0237 5.0237 90.185 0 0 0 16.171364719313956 32.90144297218646 16.171364719313956 23.857055522550255 0 1.805462187404089 1.3979400086720375 0 0 [Y{I|L}]R{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VV{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}{I|L} 5.0237;3.03 -;- 400 NaN NaN 219138.9 NaN 16465 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20504 83.947 NaN 656550 35 0 23416 0.261 + 23896 RSSKQLVDI 9 93 523.3037994738958 1044.5930460145914 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20502 610994.875 0.27581806869530073 40 -0.6388702392578125 2 Unmodified _RSSKQLVDI_ ENSG00000116260|ENST00000367602|QSOX1 6.2057823575117 0.30397260197431997 2 Q 1 8 11.281 0 0 1.08 0 0 502.2998225005787 411.2234982184715 913.5233207190502 0 0 0 0 0 0.7302046884880937 0 0 0 + Q 1.08 + + 64 + NaN NaN 194448.3 NaN 16466 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20505 83.951 NaN 1117200 35 0 71223 0.261 + 26142 SPMDIFDMF 9 113 567.7280993560862 1133.4416457789723 2 567.7279663085938 MULTI HCD FTMS 0 0 0 20502 243694.484375 0.4098737479972055 -15 0.41957855224609375 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 2 {M(Oxidation (M))|F}D[YT]YN{M(Oxidation (M))|F} 7 6 49.912 0 0 4.4036 0 0 165.08135462668298 0 165.08135462668298 0 35.97225881582601 0 0 0 0.805462187404089 0 0.6139829889124311 0.5752574989159953 {M(Oxidation (M))|F}D[YT]YN{M(Oxidation (M))|F} 4.4036 - 951 + NaN NaN 261298 NaN 16467 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20506 83.954 NaN 282670 35 0 30503 0.261 + 17912 MILELDPTF 9 56 547.7754196984221 1093.536286463644 2 547.7753295898438 MULTI HCD FTMS 0 0 0 20502 143234.078125 0.0238928244958283 54 -0.8560409545898438 4 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 92.8221339359638 0.0044520161739443126 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 70.569 0 0 6.4533 6.4533 91.136 0 0 0 18.343852734378885 10.280287236002437 10.280287236002437 13.450528104279016 0 2.1237125054200234 2 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[MT]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}{[CP]|[EA]}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EAE{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}EA{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{I|L};[{M(Oxidation (M))|F}T]PD{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{I|L};[TP]{M(Oxidation (M))|F}D{I|L}E{I|L}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]PD{I|L}{M(Oxidation (M))|F}{I|L}E{I|L} 6.4533;5.2232;4.766;4.7613;3.2072;3.2011;2.3814;2.3433;2.0448;1.8085 +;-;-;-;-;-;-;-;-;- + 625 NaN NaN 141966.9 NaN 16468 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20507 83.957 NaN 276230 35 0 10552 0.261 -1 0 87 545.3169038290621 1088.619254724924 2 545.31689453125 MULTI HCD FTMS 0 0 0 20502 215195.328125 0.05216139457315806 -46 1.2979965209960938 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2841 0 0 923.5404411036335 0 923.5404411036335 0 0.6590949049147987 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2841 - 90 + NaN NaN 131612.7 NaN 16469 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20508 83.961 NaN 412960 35 0 34009 0.261 + 29204 TYLDIFRDF 9 80 595.2983882232119 1188.5822235132237 2 595.298583984375 MULTI HCD FTMS 0 0 0 20502 131275.65625 0.781880410380933 -3 0.08200836181640625 6 Unmodified _TYLDIFRDF_ ENSG00000072818|ENST00000158762|ACAP1 59.368380827593164 0.01846506874148156 2 [YT]{I|L}D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F} 9 0 + 87.546 0 0 7.3656 7.3656 95.756 0 0 0 25.642492736872597 67.85335007137462 25.642492736872597 59.060866055724546 0 1.8494850021680094 2 0.6989700043360187 0 + + [YT]{I|L}D{I|L}{M(Oxidation (M))|F}RD{M(Oxidation (M))|F};[YT][TA]{M(Oxidation (M))|F}{I|L}QQA{M(Oxidation (M))|F};[YT][YR]{[{M(Oxidation (M))|F}H]|[RQ]}R{M(Oxidation (M))|F};[R{M(Oxidation (M))|F}]D[Y{I|L}][{I|L}T]D{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[RH]H[{M(Oxidation (M))|F}V];{[CP]|[EA]}{M(Oxidation (M))|F}[RH]{M(Oxidation (M))|F}H[{M(Oxidation (M))|F}V];{[CP]|[EA]}[HV]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}R{M(Oxidation (M))|F} 7.3656;2.3966;1.9163;0.53702;0.40293;0.40293;0.33541 +;-;-;-;-;-;- + 398 NaN NaN 151617.5 NaN 16470 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20509 83.964 NaN 183070 35 0 16293 0.262 + 9918 IDFDCQCF 8 57 495.6873256973373 989.3600984614746 2 495.687744140625 MULTI HCD FTMS 0 0 0 20502 64163.125 0.4382920778816858 1 -0.03618621826171875 7 Unmodified _IDFDCQCF_ REV__ENSG00000112855|ENST00000230771|HARS2;REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF;REV__nc|ENSG00000112855|P49590-2|HARS2 5.230669730166228 0.5342319408533849 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L} 7 -1 37.68 0 0 3.8086 0 0 0 126.93203384649338 126.93203384649338 29.09695249886751 0 0 0 0 0 1.6989700043360187 0.28872548999643577 0.7302046884880937 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L} 3.8086 - 146 NaN NaN 120683.4 NaN 16471 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20510 83.967 NaN 341910 35 0 31731 0.261 + 16505 LTFPSAGTLL 10 68 510.2910861276897 1018.5676193221794 2 511.2814025878906 MULTI HCD FTMS 0 0 0 20502 9309.5703125 0.29672304829971435 6 -0.16408538818359375 8 Unmodified _LTFPSAGTLL_ REV__ENSG00000162302|ENST00000334205|RPS6KA4;REV__ENST00000532885.5_1_11:64128013-64135652:+|nuORF;REV__nc|ENSG00000162302|O75676-2|RPS6KA4 10.073929032068715 0.4168838835836452 2 [{I|L}T][W{M(Oxidation (M))|F}]QT{I|L} 7 -1 42.452 0 0 4.1678 0 0 0 126.09227672877945 126.09227672877945 23.629456897732975 0 0 0 0 0 1.6989700043360187 0.7742275032520141 0.3494850021680094 [{I|L}T][W{M(Oxidation (M))|F}]QT{I|L} 4.1678 - 518 NaN NaN 143767 NaN 16472 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20511 83.971 NaN 168230 35 0 20917 0.261 + 12281 KLPALFFL 8 54 474.79961005534796 947.5846671774959 2 474.79925537109375 MULTI HCD FTMS 0 0 0 20502 37293.578125 0.02609099972234186 19 -0.416748046875 9 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 32.116972079565 0.3321965280364247 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 5 33.188 0 0 3.5023 0 0 522.352944024229 0 522.352944024229 0 24.215817701185287 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.5023 + + 37 NaN NaN 130082 NaN 16473 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20512 83.974 NaN 114410 35 0 32776 0.261 -1 PMQPVSVNRQM 11 42 434.88229096948726 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 20502 45015.90234375 0.5525585740125689 -11 0.3082275390625 10 Oxidation (M) _PM(Oxidation (M))QPVSVNRQM_ ENSG00000198646|ENST00000359003|NCOA6 0.40826533853263924 0.34096201227758716 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100651.1 NaN 16474 4036 20502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20514 83.979 NaN 890350 35 0 125720 0.327 + 21591 PYNDYFEYF 9 64 629.2586630593668 1256.5027731855334 2 629.259033203125 MULTI HCD FTMS 0 0 0 20513 323961.25 0.05537134215933898 16 -0.3551788330078125 1 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 47.594388314883695 0.03493607795751234 2 Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 5 4 51.983 0 0 4.1371 0 0 489.18543259013603 0 489.18543259013603 0 7.879784740104583 0 0 0 1.8494850021680094 0 0.3054621874040891 0 + Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4.1371 + + 274 NaN NaN 221963.6 NaN 16475 4037 20513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20515 83.983 NaN 522760 35 0 119560 0.262 + 30749 VPLIFTVDF 9 58 525.7971385926352 1049.5797242520703 2 525.7805786132812 MULTI HCD FTMS 0 0 0 20513 23955.16796875 0.05852925472538568 20 -0.40035247802734375 2 Unmodified _VPLIFTVDF_ REV__ENSG00000080561|ENST00000262843|MID2;REV__nc|ENSG00000080561|Q9UJV3-2|MID2 12.531546534597751 0.2520865569484384 2 VSY{I|L}S{I|L}G{M(Oxidation (M))|F} 8 -1 50.866 0 0 4.8463 0 0 165.11249241882552 0 165.11249241882552 0 38.787756685520094 0 0 0 0 0 0 0 VSY{I|L}S{I|L}G{M(Oxidation (M))|F} 4.8463 - 168 + NaN NaN 175250.3 NaN 16476 4037 20513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20516 83.987 NaN 165660 35 0 6987.1 0.261 + 23099 RERTVLLD 8 61 501.29065233338474 1000.5667517335695 2 501.2905578613281 MULTI HCD FTMS 0 0 0 20513 109837.265625 0.5728884229447291 1 -0.02292633056640625 3 Unmodified _RERTVLLD_ REV__ENSG00000110427|ENST00000658780|KIAA1549L;REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L 4.3292370932331545 0.5355693454741696 2 Q 1 -1 9.732 0 0 0.97265 0 0 458.2747688259853 411.22310991050875 869.497878736494 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.97265 - 66 + NaN NaN 128087.8 NaN 16477 4037 20513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20517 83.99 NaN 369870 35 0 29303 0.261 + -1 MIVGLSWMDC 10 80 614.2643712035962 1226.5141894739922 2 614.26416015625 MULTI HCD FTMS 0 0 0 20513 188502.5 0.9041799330178238 -5 0.1476593017578125 4 Carbamidomethyl (C),Oxidation (M) _MIVGLSWM(Oxidation (M))DC(Carbamidomethyl (C))_ REV__ENSG00000114738|ENST00000621469|MAPKAPK3;REV__ENSG00000162889|ENST00000367103|MAPKAPK2;REV__nc|ENSG00000162889|P49137-2|MAPKAPK2 10.073929032068715 0.4168838835836452 2 YY{[VA]|[{I|L}G]}VPE 7 -1 26.904 0 0 2.1935 0 0 387.0917225568375 0 387.0917225568375 0 0.33886970509072967 0 0 0 1.5 0 0 0 YY{[VA]|[{I|L}G]}VPE 2.1935 - 524 NaN NaN 154853.1 NaN 16478 4037 20513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20518 83.994 NaN 87187 35 0 5179.9 0.261 + -1 IIRKFWFV 8 56 575.8419496470875 1149.669346360975 2 575.84326171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IIRKFWFV_ REV__ENST00000424459.7_2_5:56471425-56471509:+|nuORF 2.577480529830294 0.5381683276125971 2 D 1 -1 5.4846 0 0 0.47705 0 0 105.07905856907549 926.5161837213499 1031.5952422904254 0 0 0 0 0 0 0 0 0 D 0.47705 - 26 + NaN NaN 104394.4 NaN 16479 4037 20513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20519 83.997 NaN 309360 35 0 33746 0.261 + 3123 EANAVFDIL 9 60 496.2584302824819 990.5023076317639 2 496.2586364746094 MULTI HCD FTMS 0 0 0 20513 164528.828125 0.5846511219359222 -5 0.1476593017578125 6 Unmodified _EANAVFDIL_ ENSG00000184967|ENST00000330579|NOC4L 53.832793166522166 0.026208976789938845 2 D{I|L}{I|L} 3 6 38.258 0 0 3.8625 0 0 631.296370606727 0 631.296370606727 0 12.315534464597704 0 0 0 0.8807196863200843 0 0.3252574989159953 0 + D{I|L}{I|L} 3.8625 + + 73 NaN NaN 139717.5 NaN 16480 4037 20513 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20521 84.002 NaN 805270 35 0 107450 0.327 + 249 AFEDVAVYF 9 79 530.7529992502808 1059.4914455673616 2 531.2705078125 MULTI HCD FTMS 0 0 0 20520 73360.5703125 0.6978404012241958 3 -0.08203125 1 Unmodified _AFEDVAVYF_ ENSG00000083812|ENST00000196482|ZNF324;ENSG00000240747|ENST00000383748|KRBOX1;ENST00000418093.2_1_3:42980387-43074030:+|nuORF;ENST00000463888.1_1_3:42982705-42984136:+|nuORF;nc|ENSG00000240747|C9JBD0-2|KRBOX1 28.486842064014134 0.11819662193267319 2 AVY{M(Oxidation (M))|F} 4 5 47.423 0 0 4.476 0 0 561.2430771689393 0 561.2430771689393 0 27.44386806657971 0 0 0 1.8494850021680094 0 0 0 + AVY{M(Oxidation (M))|F} 4.476 + + 242 NaN NaN 210996.7 NaN 16481 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20522 84.006 NaN 970160 35 0 59214 0.261 + 3456 EFTTVLYNF 9 115 567.2793483701312 1132.5441438070623 2 567.2796020507812 MULTI HCD FTMS 0 0 0 20520 208686.296875 0.8186842400781469 -1 0.02292633056640625 2 Unmodified _EFTTVLYNF_ chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;ENSG00000073282|ENST00000264731|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;nc|ENSG00000073282|Q9H3D4-6|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63 52.268347100219714 0.028397529699942435 2 C(Carbamidomethyl (C)){I|L}{I|L}VYN{M(Oxidation (M))|F} 7 5 51.987 0 0 4.5903 0 0 205.09660903440027 0 205.09660903440027 0 35.956385522334244 0 0 0 1 0 0 0.5796896906561032 C(Carbamidomethyl (C)){I|L}{I|L}VYN{M(Oxidation (M))|F} 4.5903 - 1898 + NaN NaN 254393.2 NaN 16482 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20523 84.01 NaN 539240 35 0 60929 0.261 + 457 ALPDQSFLW 9 74 538.7742277826029 1075.5339026320057 2 538.7739868164062 MULTI HCD FTMS 0 0 0 20520 205828.296875 0.9192563778286406 2 -0.052490234375 3 Unmodified _ALPDQSFLW_ ENSG00000249915|ENST00000264933|PDCD6;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507841.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;nc|ENSG00000249915|O75340-3|PDCD6 114.6490535036381 0.0021834323520089267 2 [{I|L}A][DP]QS{M(Oxidation (M))|F}{I|L}W 9 0 + 74.86 0 0 6.9603 6.9603 89.281 0 0 0 0.049610462707633474 0.049610462707633474 0.049610462707633474 9.068248020744306 0 2.363982988912431 1.3010299956639813 0.2614393726401688 0.2742275032520141 + + [{I|L}A][DP]QS{M(Oxidation (M))|F}{I|L}W;[{I|L}A][DP]QYA{I|L}W;[{I|L}A][DP][AG]S{M(Oxidation (M))|F}{I|L}W;[DP][{I|L}A]QS{M(Oxidation (M))|F}{I|L}W;[DP]Q[{I|L}A]S{M(Oxidation (M))|F}{I|L}W;[DP][{I|L}A]QYA{I|L}W;[DP]Q[{I|L}A]YA{I|L}W;[{I|L}A][DP][AG]YA{I|L}W;[{I|L}A][DP]QSW{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F}S[YT]{[QN]|[E{I|L}]|[KN]} 6.9603;6.1171;5.8492;5.5574;5.5099;4.7188;4.6714;4.6046;4.2622;4.2552 +;-;-;-;-;-;-;-;-;- + 963 + NaN NaN 184343.6 NaN 16483 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20524 84.013 NaN 335490 35 0 61883 0.261 + -1 PACLAWPH 8 52 468.72291735429854 935.4312817753971 2 468.7232360839844 MULTI HCD FTMS 0 0 0 20520 174662.421875 0.1609231827263806 -4 0.1248931884765625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PACLAWPH_ REV__nc|ENSG00000185499|P15941-13|MUC1 0.7936320650641473 0.540814922690045 2 Q 1 -1 11.352 0 0 1.2135 0 0 396.28448096336143 408.07013879947505 804.3546197628365 0 0 0 0 0 0.5 0 0 0.3252574989159953 Q 1.2135 - 12 + NaN NaN 139006.4 NaN 16484 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20525 84.016 NaN 372230 35 0 63466 0.261 + -1 FSCLYCTLLL 10 70 616.8056223892866 1231.596691845373 2 616.8065795898438 MULTI HCD FTMS 0 0 0 20520 70795.28125 0.5066045116433889 1 -0.02960968017578125 5 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))LYCTLLL_ REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF 10.073929032068715 0.4168838835836452 2 {I|L}{I|L} 2 -1 25.969 0 0 2.1086 0 0 987.4224720685562 0 987.4224720685562 0 18.182503180159344 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.1086 + + 44 NaN NaN 152511.5 NaN 16485 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20526 84.02 NaN 142360 35 0 16426 0.264 + 23234 RGAVVGPR 8 56 406.24854258882544 810.4825322444509 2 406.2487487792969 MULTI HCD FTMS 0 0 0 20520 100911.1875 0.029288870896983246 15 -0.33225250244140625 6 Unmodified _RGAVVGPR_ ENST00000373043.1_2_1:38273978-38274170:+|nuORF 0.6903765706972694 0.5409681170271811 2 P 1 7 10.485 0 0 1.2936 0 0 493.2919022169103 217.10810266666252 710.4000048835728 0 0 0 0 0 0.5 0 0 0 + P 1.2936 + + 10 + NaN NaN 105916.6 NaN 16486 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20527 84.023 NaN 227450 35 0 40674 0.261 + 26805 SYIDRLISVF 10 53 606.8343689931705 1211.654185053141 2 606.8349609375 MULTI HCD FTMS 0 0 0 20520 91996.7578125 0.2701637696148654 -6 0.17058563232421875 7 Unmodified _SYIDRLISVF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 32.037481411007896 0.2145045983280644 2 {I|L}SV{M(Oxidation (M))|F} 4 6 41.305 0 0 3.409 0 0 747.3912831037125 0 747.3912831037125 0 33.34605507340511 0 0 0 1.113982988912431 0 0.4247425010840047 0 + {I|L}SV{M(Oxidation (M))|F} 3.409 + + 79 NaN NaN 120702.3 NaN 16487 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20528 84.026 NaN 103940 35 0 24834 0.262 -1 TLSEEWLL 8 50 516.7661232790725 1031.517693624945 2 516.7659912109375 MULTI HCD FTMS 0 0 0 20520 50232.4765625 0.2624102924879338 10 -0.255279541015625 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TLSEEWLL_ ENSG00000004399|ENST00000324093|PLXND1;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;PLXND1|p.N1550K|1|0.4|ENSG00000004399|chr3:129563112-129563112|G/T|missense_variant 9.347437153973935 0.5250182646323369 2 {I|L}{I|L} 2 -1 25.217 0 0 2.4446 0 0 787.3401593970511 0 787.3401593970511 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.4446 + + 4 NaN NaN 100813.3 NaN 16488 4038 20520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20530 84.031 NaN 842440 35 0 46951 0.327 -1 0 112 567.3307994004714 1132.6470458677427 2 567.3299560546875 MULTI HCD FTMS 0 0 0 20529 206409.421875 0.11234179185142823 -36 1.019927978515625 1 NaN NaN 2 T{I|L}{I|L}VYN{M(Oxidation (M))|F} 7 -1 44.914 0 0 3.9654 0 0 264.1604146208293 0 264.1604146208293 0 27.56543965877938 0 0 0 0 0 0.2302046884880938 0.3807196863200844 T{I|L}{I|L}VYN{M(Oxidation (M))|F} 3.9654 - 1732 + NaN NaN 237960.3 NaN 16489 4039 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20531 84.036 NaN 344440 35 0 39616 0.261 + 13601 KYPENFFLL 9 56 585.8131605635726 1169.6117681939452 2 585.8134765625 MULTI HCD FTMS 0 0 0 20529 174827.28125 0.0008886952247080207 314 -7.329811096191406 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 41.95555342248728 0.056367691549927025 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 53.579 0 0 4.5809 4.5809 86.328 0 0 0 2.77696854845523 36.56727094955208 2.77696854845523 9.208187539523749 0 1.6747425010840047 0 0 0.75 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 4.5809;3.7936;1.9297 +;-;- + 360 NaN NaN 138890 NaN 16490 4039 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20532 84.039 NaN 115840 35 0 30786 0.261 -1 YKDCNSAEAMD 11 42 631.7353643911492 1261.4561758490984 2 631.7354736328125 MULTI HCD FTMS 0 0 0 20529 53645.6875 0.1436535435311169 5 -0.12783050537109375 3 Oxidation (M) _YKDCNSAEAM(Oxidation (M))D_ ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3 1.0714618166137932 0.41422159895841093 2 E 1 -1 6.9897 0 0 0.5541 0 0 151.01779529090123 978.3499833659971 1129.3677786568983 0 0 0 0 0 0 0 0 0 E 0.5541 + + 3 + NaN NaN 111015.5 NaN 16491 4039 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20533 84.043 NaN 349190 35 0 51185 0.261 + 17865 MIGLGALVFSL 11 87 560.826466953185 NaN 0 560.8138427734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _MIGLGALVFSL_ ENSG00000173930|ENST00000310954|SLCO4C1 13.90604991867851 0.30267268458145574 2 S 1 10 9.6041 0 0 0.85779 0 0 816.4804352718012 213.10321985416252 1029.5836551259638 0 0 0 0 0 0.5 0 0 0 + S 0.85779 + + 212 + NaN NaN 146383.2 NaN 16492 4039 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20534 84.046 NaN 141580 35 0 9597 0.261 + 5306 FFIDQANYF 9 66 582.7713738947356 1163.528194856271 2 582.7720336914062 MULTI HCD FTMS 0 0 0 20529 44091.859375 0.3432306259015588 6 -0.153900146484375 5 Unmodified _FFIDQANYF_ ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2 57.72198328787511 0.020768266150574023 2 {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F} 9 0 + 64.491 0 0 5.5427 5.5427 87.774 0 0 0 4.762036441594191 59.006463440993926 4.762036441594191 9.208187539523749 0 2.2302046884880937 0 0 0.3807196863200844 + + {{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQAGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]ANY{M(Oxidation (M))|F};[WY][{I|L}T]SANY{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[{M(Oxidation (M))|F}E]ANY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQAN[VP]N;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}D[AG]AGGY{M(Oxidation (M))|F};[WY][{I|L}T]SAGGY{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[{M(Oxidation (M))|F}E]AGGY{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}DQAGG[VP]N 5.5427;4.7513;4.7513;4.2958;3.8177;3.6868;3.6364;3.1772;3.0263;2.8992 +;-;-;-;-;-;-;-;-;- + 437 NaN NaN 119815.9 NaN 16493 4039 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20535 84.049 NaN 147690 35 0 25654 0.262 -1 NLPSCPML 8 50 474.21831780617674 NaN 0 474.230712890625 PEAK HCD FTMS 0 0 0 20529 7667.50244140625 0.15262920968874188 5 -0.12783050537109375 6 Carbamidomethyl (C),Oxidation (M) _NLPSC(Carbamidomethyl (C))PM(Oxidation (M))L_ ENSG00000162836|ENST00000583509|ACP6;ENST00000609196.5_1_1:147102847-147131108:-|nuORF 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.99997 0 0 129.93186158715974 519.3302706354124 649.2621322225721 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.99997 - 13 + NaN NaN 106941.8 NaN 16494 4039 20529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20537 84.054 NaN 1204000 35 0 172250 0.327 + 2249 DLFDFITER 9 88 578.2877616286761 1154.560970324152 2 578.2879028320312 MULTI HCD FTMS 0 0 0 20536 629615.3125 0.6964504401587495 3 -0.08208465576171875 1 Unmodified _DLFDFITER_ ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1 136.39213081522345 0.00021731600835925866 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TER 9 0 + 115.72 0 0 10.023 10.023 97.873 0 0 0 5.0014734644757795 5.0014734644757795 5.0014734644757795 30.510299956639813 0 3.305462187404089 2 2.059894379144197 0.25 + + {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TER;{[{M(Oxidation (M))|F}D]|MM}{I|L}D{M(Oxidation (M))|F}{I|L}TER;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DT{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ER;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DE{I|L}T{M(Oxidation (M))|F}R;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EER;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DT{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}R;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DT{[QN]|[E{I|L}]|[KN]}VG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DE{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}DT{[RE]|[WV]}{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}EG{NN|[MP]|[D{I|L}]|[EV]} 10.023;7.38;7.1606;7.1142;6.7197;6.1641;5.6487;5.4275;5.3193;5.1113 +;-;-;-;-;-;-;-;-;- + 1751 NaN NaN 272244.8 NaN 16495 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20538 84.059 NaN 142930 35 0 18173 0.261 + 6235 FPETLPESSLF 11 39 633.8161028974123 1265.6176528616245 2 633.8167114257812 MULTI HCD FTMS 0 0 0 20536 76257.2734375 0.9639241361357677 -2 0.052490234375 2 Unmodified _FPETLPESSLF_ ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 16.149105407346934 0.31637472687818013 2 {I|L}{M(Oxidation (M))|F} 2 9 20.969 0 0 1.6568 0 0 987.453905174025 0 987.453905174025 0 13.979400086720375 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.6568 + + 3 NaN NaN 112544.7 NaN 16496 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20539 84.062 NaN 280490 35 0 45269 0.263 + 10486 IPDSFFSSL 9 64 506.7530428893046 1011.4915328454092 2 506.7526550292969 MULTI HCD FTMS 0 0 0 20536 58834.83984375 0.4971966721862623 -4 0.111602783203125 3 Unmodified _IPDSFFSSL_ ENSG00000136636|ENST00000259154|KCTD3;ENSG00000160410|ENST00000291842|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}SS{I|L} 4 5 49.24 0 0 4.8681 0 0 559.2623768537125 0 559.2623768537125 0 34.63615337528019 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + {M(Oxidation (M))|F}SS{I|L} 4.8681 + + 49 NaN NaN 149388.3 NaN 16497 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20540 84.066 NaN 210230 35 0 20374 0.261 + 20647 PFHPPLQLFF 10 63 621.8370376216208 1241.6595223100414 2 621.8368530273438 MULTI HCD FTMS 0 0 0 20536 103686.5078125 0.1711944320928962 -8 0.22307586669921875 4 Unmodified _PFHPPLQLFF_ ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF 19.256988751693697 0.33098864134661865 2 Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 6 32.167 0 0 2.5906 0 0 688.37114150215 0 688.37114150215 0 4.719712763997563 0 0 0 0.5 0 0 0 + Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5906 + + 132 NaN NaN 134800 NaN 16498 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20541 84.069 NaN 161830 35 0 24574 0.261 -1 SPRCDMDYF 9 53 603.7326867408528 1205.4508205485056 2 603.7340087890625 MULTI HCD FTMS 0 0 0 20536 99240.4765625 0.713615969004163 -4 0.111602783203125 5 Carbamidomethyl (C),Oxidation (M) _SPRC(Carbamidomethyl (C))DM(Oxidation (M))DYF_ ENST00000282185.7_1_5:81549233-81550063:+|nuORF 10.823927491677226 0.26684000660059787 2 SY{M(Oxidation (M))|F} 3 -1 34.425 0 0 2.8558 0 0 790.2754736128354 0 790.2754736128354 0 14.71971276399756 0 0 0 0.8494850021680094 0 0.4247425010840047 0 SY{M(Oxidation (M))|F} 2.8558 - 33 NaN NaN 134786.5 NaN 16499 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20542 84.072 NaN 92606 35 0 7128.3 0.261 -1 QLMMDHIKSM 10 47 641.2846477131941 1280.554742493188 2 641.2853393554688 MULTI HCD FTMS 0 0 0 20536 30675.33203125 0.6207383392678358 -4 0.111602783203125 6 3 Oxidation (M) _QLM(Oxidation (M))M(Oxidation (M))DHIKSM(Oxidation (M))_ ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492938-79493973:+|nuORF 4.189502756095605 0.45312800054222196 2 DT{I|L} 3 -1 23.188 0 0 1.8107 0 0 164.09241446760058 784.2787296452146 948.3711441128153 0 0 0 0 0 1 0 0 0 DT{I|L} 1.8107 - 13 + NaN NaN 110309.8 NaN 16500 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20543 84.076 NaN 271340 35 0 20726 0.261 + -1 CILHCFSWG 9 63 590.2588868835453 NaN 0 590.25927734375 PEAK HCD FTMS 0 0 0 20536 14229.3427734375 0.2947460375448617 2 -0.05248260498046875 7 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILHC(Carbamidomethyl (C))FSWG_ REV__ENST00000479677.6_1_17:19641536-19646703:-|nuORF 24.67388899826682 0.15602608049614122 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 16.198 0 0 1.3744 0 0 273.95042367900516 528.2934876712985 802.2439113503037 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 1.3744 - 53 + NaN NaN 136724.3 NaN 16501 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20544 84.079 NaN 55451 35 0 5520.6 0.262 + 5631 FMHFLFAG 8 39 485.23648801173806 NaN 0 485.7236022949219 PEAK HCD FTMS 0 0 0 20536 5305.80322265625 0.30910131874081126 2 -0.05248260498046875 8 Unmodified _FMHFLFAG_ REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF 0.7936320650641473 0.38822285293237185 2 P 1 -1 6.9897 0 0 0.72173 0 0 113.11646141017805 755.2700289361936 868.3864903463717 0 0 0 0 0 0 0 0 0 P 0.72173 - 5 + NaN NaN 96130.5 NaN 16502 4040 20536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20546 84.084 NaN 4261100 35 0 711630 0.326 + 22772 QYILFPLRF 9 89 598.8450364420323 1195.6755199508646 2 598.8452758789062 MULTI HCD FTMS 0 0 0 20545 2206474.75 0.22066501786892057 -3 0.08203125 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 158.20266083822983 1.5497770410472245E-07 2 QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 81.771 0 0 6.8389 6.8389 87.456 0 0 0 5.03170062512001 5.03170062512001 5.03170062512001 5.03170062512001 0 2.2416440611282624 1.3010299956639813 0 0.7293036574208875 + + QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};QY{I|L}{I|L}{M(Oxidation (M))|F}PR{I|L}{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};QY{M(Oxidation (M))|F}{I|L}{I|L}P{I|L}R{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}[VG]{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F} 6.8389;6.4181;6.0149;5.5636;5.3499;5.0347;4.5322;4.4866;4.265;4.1803 +;+;-;-;-;-;-;-;-;- + 1511 + NaN NaN 738741.1 NaN 16503 4041 20545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20547 84.088 NaN 399060 35 0 25955 0.261 -1 0 90 553.8300991066263 1105.6456452800526 2 553.8302001953125 MULTI HCD FTMS 0 0 0 20545 333126.9375 0.14822592124238074 -41 1.1610794067382812 2 NaN NaN 2 D 1 -1 7.3464 0 0 0.66444 0 0 61.053566437279706 926.5185640924436 987.5721305297234 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.66444 - 66 + NaN NaN 146547.6 NaN 16504 4041 20545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20548 84.092 NaN 758870 35 0 156610 0.261 + 27425 SYTYLSLGF 9 63 525.761056292086 1049.5075596509719 2 525.7609252929688 MULTI HCD FTMS 0 0 0 20545 186485.859375 0.6857120351817171 -1 0.029541015625 3 Unmodified _SYTYLSLGF_ ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant 64.23631603340823 0.01165516075559909 2 [YT]SY{I|L}S{I|L}G{M(Oxidation (M))|F} 9 2 + 67.885 0 0 6.4683 6.4683 93.731 0 0 0 43.72872192056825 0.7378621416091846 0.7378621416091846 44.74160347734631 0 1.805462187404089 0 0.4247425010840047 0 [YT]SY{I|L}S{I|L}G{M(Oxidation (M))|F};{[TV]|[{I|L}S]}G[DN][{I|L}V]SV{M(Oxidation (M))|F};[YT]S[{I|L}V][YT]G{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[DN][{I|L}V]SV{M(Oxidation (M))|F} 6.4683;2.2052;1.8516;0.99226 -;-;-;- 256 + NaN NaN 202996.9 NaN 16505 4041 20545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20549 84.095 NaN 171590 35 0 13207 0.261 -1 NFLFMCSVE 9 66 581.7487987484204 1161.4830445636408 2 581.7484130859375 MULTI HCD FTMS 0 0 0 20545 54404.109375 0.9612562860614701 1 -0.02294158935546875 4 Carbamidomethyl (C),Oxidation (M) _NFLFM(Oxidation (M))C(Carbamidomethyl (C))SVE_ ENSG00000128274|ENST00000642412|A4GALT 10.823927491677226 0.26684000660059787 2 D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 4 -1 16.462 0 0 1.4173 0 0 672.2596302716812 0 672.2596302716812 0 2.2931473579653883 0 0 0 0.75 0 0 0 D{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]} 1.4173 - 55 NaN NaN 114836.4 NaN 16506 4041 20545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20550 84.098 NaN 86900 35 0 8774.1 0.264 + 8835 HLECLRHNNE 10 35 422.19893808483636 NaN 0 422.1987609863281 PEAK HCD FTMS 0 0 0 20545 17489.072265625 0.5884684975266251 1 -0.02294158935546875 5 Unmodified _HLECLRHNNE_ REV__ENST00000592367.5_3_6:170154087-170155405:+|nuORF 2.0860074813731053 0.33839895573887124 2 G 1 -1 2.4743 0 0 0.29372 0 0 341.1453604452602 441.1920565240844 782.3374169693446 0 0 0 0 0 0 0 0 0 G 0.29372 - 1 + NaN NaN 93901.2 NaN 16507 4041 20545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20551 84.102 NaN 337480 35 0 34823 0.261 + 32799 WSLECLQDW 9 44 590.2588868835453 NaN 0 590.3458862304688 PEAK HCD FTMS 0 0 0 20545 15501.314453125 0.32109360808459386 3 -0.075408935546875 6 Unmodified _WSLECLQDW_ ENSG00000142494|ENST00000270570|SLC47A1;ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENST00000497548.5_1_17:19437252-19459239:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1 10.823927491677226 0.2427956001690155 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 7 16.198 0 0 1.3744 0 0 273.95032077102866 528.2935455129393 802.2438662839679 0 0 0 0 0 0 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 1.3744 - 24 + NaN NaN 151703.1 NaN 16508 4041 20545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20553 84.107 NaN 1122500 35 0 54854 0.327 -1 0 120 545.3169038290621 1088.619254724924 2 545.31689453125 MULTI HCD FTMS 0 0 0 20552 1010383.0625 0.24490768481035455 -40 1.1248703002929688 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.1725 0 0 923.5406852442585 0 923.5406852442585 0 1.0817721953646835 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1725 - 200 + NaN NaN 258001.1 NaN 16509 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20554 84.111 NaN 527000 35 0 17627 0.261 + 28695 TSILAKQRE 9 88 523.3037994738958 1044.5930460145914 2 523.3038940429688 MULTI HCD FTMS 0 0 0 20552 437396.03125 0.19745129383346205 46 -0.6467361450195312 2 Unmodified _TSILAKQRE_ ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F} 1 9 12.218 0 0 1.1697 0 0 879.5143392048243 0 879.5143392048243 0 2.728787452803374 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1697 - 101 + NaN NaN 174108.4 NaN 16510 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20555 84.115 NaN 815040 35 0 64529 0.261 + 26143 SPMDIFDMF 9 105 567.7280993560862 1133.4416457789723 2 567.7280883789062 MULTI HCD FTMS 0 0 0 20552 246059.703125 0.41385184818433973 -9 0.24609375 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 48.345845343767074 0.03388484103555672 2 NY[YT]D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 6 45.068 0 0 3.9762 0 0 165.07864577461095 0 165.07864577461095 0 30.630551101096728 0 0 0 0.8494850021680094 0 0.6307196863200843 0.3054621874040891 NY[YT]D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.9762 - 728 NaN NaN 223077.4 NaN 16511 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20556 84.118 NaN 441470 35 0 28031 0.261 -1 MILTRMLCV 9 76 548.290081708585 1094.56561048397 2 547.775390625 MULTI HCD FTMS 0 0 0 20552 10275.8876953125 1 0 0 4 Oxidation (M) _M(Oxidation (M))ILTRMLCV_ ENSG00000165202|ENST00000297913|OR1Q1 19.438996006549623 0.19240772610395238 2 [{M(Oxidation (M))|F}V]K{[QN]|[E{I|L}]|[KN]}DPT{M(Oxidation (M))|F} 9 -1 + 38.681 0 0 3.5339 3.5339 86.964 0 0 0 -3.3804562952783996 16.47817481888638 -3.3804562952783996 13.323872065994568 0 0 0 1.360924374808178 0 [{M(Oxidation (M))|F}V]K{[QN]|[E{I|L}]|[KN]}DPT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{[MS]|[{M(Oxidation (M))|F}A]}K{NN|[MP]|[D{I|L}]|[EV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]}K{NN|[MP]|[D{I|L}]|[EV]};[{M(Oxidation (M))|F}V]K{[QN]|[E{I|L}]|[KN]}[EP]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[ET]|[MV]}[RV]PT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K{NN|[MP]|[D{I|L}]|[EV]};[{M(Oxidation (M))|F}V]K{[MS]|[{M(Oxidation (M))|F}A]}[HV]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]K{[MS]|[{M(Oxidation (M))|F}A]}[H{I|L}]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HA]S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]KQQM[PA]{M(Oxidation (M))|F} 3.5339;2.3166;2.1436;1.5936;1.469;1.1536;0.94747;0.76446;0.60358;0.48897 -;-;-;-;-;-;-;-;-;- 866 + NaN NaN 168029.5 NaN 16512 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20557 84.121 NaN 450910 35 0 79899 0.261 + -1 MINTPVDLSL 10 75 559.7912965920087 1117.5680402508174 2 559.774169921875 MULTI HCD FTMS 0 0 0 20552 61886.90234375 0.33807801288648925 12 -0.23398590087890625 5 Oxidation (M) _M(Oxidation (M))INTPVDLSL_ REV__ENSG00000178473|ENST00000380433|UCN3 29.84058131909904 0.23356904650364865 2 VT{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]{I|L}S{I|L} 8 -1 35.539 0 0 3.18 0 0 165.0787831037125 0 165.0787831037125 0 13.667053245199625 0 0 0 0.7059771852360797 0 0.75 0 VT{M(Oxidation (M))|F}[C(Carbamidomethyl (C))N]{I|L}S{I|L} 3.18 - 875 NaN NaN 156503.6 NaN 16513 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20558 84.125 NaN 223880 35 0 13375 0.261 + 9721 HWLFWPLL 8 71 556.3076301146024 1110.6007072960047 2 556.30859375 MULTI HCD FTMS 0 0 0 20552 97218.9921875 0.32460475478524753 -10 0.2755584716796875 6 Unmodified _HWLFWPLL_ REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF 6.354104778181461 0.5325651638111438 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 4 -1 24.412 0 0 2.1981 0 0 594.3637210672922 0 594.3637210672922 0 20.9176003468815 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 2.1981 - 91 + NaN NaN 122670.8 NaN 16514 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20559 84.128 NaN 321860 35 0 141900 0.261 + 23282 RHKITKRGQ 9 53 562.3441892877515 NaN 0 562.3438720703125 PEAK HCD FTMS 0 0 0 20552 146158.390625 0.30837445591859297 -6 0.16408538818359375 7 Unmodified _RHKITKRGQ_ nc|ENSG00000278030|P04435|TRBV7-9 1.844237919475145 0.28630992268396543 2 {M(Oxidation (M))|F} 1 9 6.9897 0 0 0.62259 0 0 600.3789780854655 372.19207203501134 972.5710501204769 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.62259 - 18 + NaN NaN 135359.5 NaN 16515 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20560 84.131 NaN 77464 35 0 17267 0.262 + 14924 LLEDTEAD 8 40 453.2097317391929 NaN 0 453.2093811035156 PEAK HCD FTMS 0 0 0 20552 20283.73828125 0.4443831410148613 -4 0.10497283935546875 8 Unmodified _LLEDTEAD_ REV__ENSG00000158023|ENST00000288912|CFAP251;REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF;REV__nc|ENSG00000158023|Q8TBY9-2|CFAP251;REV__nc|ENSG00000158023|Q8TBY9-3|CFAP251 2.577480529830294 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.60643 0 0 226.0193037110045 528.2925509088499 754.3118546198543 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60643 - 6 + NaN NaN 90193.6 NaN 16516 4042 20552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20562 84.136 NaN 999090 35 0 273590 0.327 + 10516 IPEPIDPLF 9 72 520.7867588317437 1039.5589647302872 2 520.787109375 MULTI HCD FTMS 0 0 0 20561 474051.625 0.5256355606400884 -9 0.25946807861328125 1 Unmodified _IPEPIDPLF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant 64.23631603340823 0.01165516075559909 2 [{I|L}P]E[{I|L}P]DP{I|L}{M(Oxidation (M))|F} 9 0 + 66.811 0 0 6.4268 6.4268 94.228 0 0 0 15.435684192257995 42.14021665275274 15.435684192257995 66.81061124810446 0 2.094187677400525 1.3979400086720375 0.3807196863200844 0 + + [{I|L}P]E[{I|L}P]DP{I|L}{M(Oxidation (M))|F} 6.4268 + + 207 NaN NaN 237882.6 NaN 16517 4043 20561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20563 84.141 NaN 338700 35 0 34645 0.261 + 3124 EANAVFDIL 9 60 496.2584302824819 990.5023076317639 2 496.258544921875 MULTI HCD FTMS 0 0 0 20561 184528.75 0.655720592837191 1 -0.02286529541015625 2 Unmodified _EANAVFDIL_ ENSG00000184967|ENST00000330579|NOC4L 45.69961567697781 0.039180348357221985 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L}{I|L} 8 5 + 56.662 0 0 5.7205 5.7205 87.162 0 0 0 12.180475292681265 23.562740216127473 12.180475292681265 9.018637558036673 0 0.9247425010840047 1.3979400086720375 0.3252574989159953 0.3807196863200844 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}QQEV{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}[NG]{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{I|L}[NG]{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{[QG]|[NA]}V{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[CP]|[EA]}{I|L}VAN 5.7205;4.81;4.2806;3.5479;3.3701;2.9632 -;-;-;-;-;- 133 NaN NaN 155687.7 NaN 16518 4043 20561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20564 84.144 NaN 511690 35 0 53392 0.261 + 21592 PYNDYFEYF 9 66 629.2586630593668 1256.5027731855334 2 629.2589111328125 MULTI HCD FTMS 0 0 0 20561 178754.328125 0.030552626479469772 22 -0.3210906982421875 3 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 40.23920728925047 0.06424668180817725 2 Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 5 4 48.778 0 0 3.882 0 0 489.1856861798844 0 489.1856861798844 0 23.371556768362858 0 0 0 1.805462187404089 0 0 0 + Y{M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.882 + + 88 NaN NaN 182281.1 NaN 16519 4043 20561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20565 84.148 NaN 175170 35 0 13643 0.261 + 32821 WVALVRFIF 9 77 575.8419496470875 1149.669346360975 2 575.8433227539062 MULTI HCD FTMS 0 0 0 20561 117417.1796875 0.11151801603667968 -23 0.6461563110351562 4 Unmodified _WVALVRFIF_ REV__ENSG00000114859|ENST00000265593|CLCN2;REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF;REV__nc|ENSG00000114859|P51788-3|CLCN2;REV__nc|ENSG00000114859|P51788-4|CLCN2;REV__nc|ENSG00000114859|P51788-5|CLCN2 5.230669730166228 0.3113646817964458 2 A 1 -1 4.5205 0 0 0.3932 0 0 105.07531130795867 970.5402315729124 1075.615542880871 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.3932 + + 38 + NaN NaN 118601.1 NaN 16520 4043 20561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20566 84.151 NaN 247600 35 0 27658 0.261 + 14524 LFDLGGQYL 9 44 513.2684905320032 1024.5224281308062 2 513.2686767578125 MULTI HCD FTMS 0 0 0 20561 83549.484375 0.39155516504592885 -4 0.1049652099609375 5 Unmodified _LFDLGGQYL_ ENSG00000179950|ENST00000526683|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60 69.10491478415734 0.009377850133389008 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GGQY{I|L} 9 0 + 75.698 0 0 7.3886 7.3886 89.524 0 0 0 5.6424927368725974 68.35138771613167 5.6424927368725974 7.715299873086607 0 2.305462187404089 0 0.3807196863200844 0.3252574989159953 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GGQY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}NQY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAVGQY{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG[AG]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N[AG]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}GG[SG]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DAVG[AG]Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}G[NS]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}N[SG]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}A[NG]Y{I|L} 7.3886;6.6355;6.3695;6.1723;5.7315;5.2186;5.1533;4.8207;4.7777;4.7223 +;-;-;-;-;-;-;-;-;- + 818 NaN NaN 140063.8 NaN 16521 4043 20561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20567 84.154 NaN 121330 35 0 9098.6 0.261 + 7780 FYNSFLEQL 9 56 580.7842776380709 1159.5540023429417 2 580.7840576171875 MULTI HCD FTMS 0 0 0 20561 65934.8515625 0.9647878307474685 1 -0.02286529541015625 6 Unmodified _FYNSFLEQL_ DTD1-RALGAPA2|1|fusion;ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF 29.43715596616401 0.11383414875064776 2 [Q{I|L}]E[C(Carbamidomethyl (C))Q]{I|L}EQ{I|L} 9 5 + 55.212 0 0 4.7615 4.7615 86.586 0 0 0 4.762036441594191 40.51924358097537 4.762036441594191 9.208187539523749 0 1.3807196863200843 0 0 0.7302046884880937 [Q{I|L}]E[C(Carbamidomethyl (C))Q]{I|L}EQ{I|L};[Q{I|L}]E[C(Carbamidomethyl (C))Q]{I|L}E[AG]{I|L} 4.7615;3.9674 -;- 66 NaN NaN 110164.6 NaN 16522 4043 20561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20569 84.159 NaN 2380800 35 0 559660 0.327 + 28539 TPQFPDMIL 9 93 531.270256467821 1060.525960002442 2 531.2705688476562 MULTI HCD FTMS 0 0 0 20568 1852147.875 0.8051970515707751 -8 0.216552734375 1 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 43.77239144664712 0.04802738721622131 2 {M(Oxidation (M))|F}[DP]M{I|L}{I|L} 6 3 43.65 0 0 4.1159 0 0 326.19334609199376 0 326.19334609199376 0 23.728473723926466 0 0 0 1.2887254899964358 0 0.6861818737241735 0 + {M(Oxidation (M))|F}[DP]M{I|L}{I|L} 4.1159 + + 690 NaN NaN 470140.1 NaN 16523 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20570 84.164 NaN 758760 35 0 128170 0.261 -1 MARTAICN 8 66 468.72291735429854 935.4312817753971 2 468.7232360839844 MULTI HCD FTMS 0 0 0 20568 930942.5625 0.8577130586232603 2 -0.0489501953125 2 Carbamidomethyl (C) _MARTAIC(Carbamidomethyl (C))N_ ENSG00000115946|ENST00000263657|PNO1 2.577480529830294 0.5381683276125971 2 Q 1 -1 10.819 0 0 1.1566 0 0 396.2844726858486 408.0690096490844 804.353482334933 0 0 0 0 0 0.5 0 0 0.3054621874040891 Q 1.1566 - 45 + NaN NaN 214344.2 NaN 16524 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20571 84.167 NaN 424870 35 0 71136 0.261 -1 IPVTIMDVF 9 75 525.7806299555876 1049.5467069779752 2 525.7803344726562 MULTI HCD FTMS 0 0 0 20568 117898.203125 0.22733592914492476 15 -0.2384033203125 3 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 20.453626601364224 0.18364154288633264 2 {I|L}S[YE]{I|L}G{M(Oxidation (M))|F} 7 -1 48.231 0 0 4.5955 0 0 222.13906645238768 0 222.13906645238768 0 32.65826334793921 0 0 0 0.5 0 0.8494850021680094 0 {I|L}S[YE]{I|L}G{M(Oxidation (M))|F} 4.5955 - 138 + NaN NaN 164815.2 NaN 16525 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20572 84.17 NaN 222930 35 0 22229 0.261 + 34960 YSPKKEKSVF 10 61 606.8343689931705 1211.654185053141 2 606.834716796875 MULTI HCD FTMS 0 0 0 20568 340522.1875 1 0 0 4 Unmodified _YSPKKEKSVF_ REV__nc|ENSG00000163599|P16410-4|CTLA4 11.494710602746466 0.4035943721457025 2 SV{M(Oxidation (M))|F} 3 -1 32.92 0 0 2.7169 0 0 860.4750347374577 0 860.4750347374577 0 21.49288766643714 0 0 0 0.8494850021680094 0 0.4247425010840047 0 SV{M(Oxidation (M))|F} 2.7169 + + 63 NaN NaN 131406.3 NaN 16526 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20573 84.174 NaN 277000 35 0 45787 0.261 + 31944 VYPASPSSWLI 11 69 610.3212108591157 1218.6278687850313 2 610.8389282226562 MULTI HCD FTMS 0 0 0 20568 66414.6640625 1 0 0 5 Unmodified _VYPASPSSWLI_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 21.536976647645854 0.2694300281126922 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]S 5 8 27.944 0 0 2.2931 0 0 0 698.3517559251526 698.3517559251526 12.370893426047544 0 0 0 0 0.9247425010840047 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[VS]S 2.2931 - 77 NaN NaN 141396.5 NaN 16527 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20574 84.177 NaN 140690 35 0 29606 0.263 + 6952 FPVPGSGLVL 10 36 493.28930017160513 984.5640474100103 2 493.2896728515625 MULTI HCD FTMS 0 0 0 20568 48606.84375 0.7203078938255794 1 -0.02606964111328125 6 Unmodified _FPVPGSGLVL_ ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2 10.073929032068715 0.4168838835836452 2 VV{I|L} 3 7 29.693 0 0 3.0158 0 0 655.3294010777968 0 655.3294010777968 0 21.593793813122062 0 0 0 0.5 0 0 0 VV{I|L} 3.0158 - 12 NaN NaN 113405.2 NaN 16528 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20575 84.18 NaN 228640 35 0 27863 0.261 + 458 ALPDQSFLW 9 60 538.7742277826029 1075.5339026320057 2 538.7739868164062 MULTI HCD FTMS 0 0 0 20568 39859.66796875 0.17801854533469577 8 -0.16606903076171875 7 Unmodified _ALPDQSFLW_ ENSG00000249915|ENST00000264933|PDCD6;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507841.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;nc|ENSG00000249915|O75340-3|PDCD6 27.628801355627647 0.12213550946336599 2 {M(Oxidation (M))|F}G{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}W 6 6 43.136 0 0 4.0107 0 0 260.15156752754064 0 260.15156752754064 0 36.146387799684874 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}G{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}W 4.0107 - 213 NaN NaN 117997.1 NaN 16529 4044 20568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20577 84.185 NaN 1067400 35 0 127320 0.327 + 24312 RYGLFLGAIF 10 89 578.8285207061119 1155.6424884790238 2 578.8295288085938 MULTI HCD FTMS 0 0 0 20576 224736 0.4888488679745095 1 -0.02288055419921875 1 Unmodified _RYGLFLGAIF_ ENSG00000101363|ENST00000373606|MANBAL 36.12702656103203 0.1790159924230938 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TG 8 8 46.816 0 0 4.0511 0 0 0 244.17774173513627 244.17774173513627 -2.033000792149039 0 -2.033000792149039 0 0 0 2 1.1936726795685342 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}TG 4.0511 - 644 NaN NaN 248080 NaN 16530 4045 20576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20578 84.19 NaN 799380 35 0 52978 0.261 -1 0 111 567.3307994004714 1132.6470458677427 2 567.3297729492188 MULTI HCD FTMS 0 0 0 20576 346217.1875 0.18843451456913732 -30 0.832855224609375 2 NaN NaN 2 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 26.643 0 0 2.3523 0 0 445.3550059280927 0 445.3550059280927 0 14.860463559038859 0 0 0 0 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3523 - 637 + NaN NaN 215303.2 NaN 16531 4045 20576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20579 84.193 NaN 380440 35 0 39105 0.261 -1 YVLCPFLLF 9 68 586.314129491623 1170.613706050046 2 586.3148193359375 MULTI HCD FTMS 0 0 0 20576 93457.1328125 0.30991390244923556 -6 0.153900146484375 3 Carbamidomethyl (C) _YVLC(Carbamidomethyl (C))PFLLF_ HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|145|3|sense 20.871210003555333 0.18003371494288972 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8 -1 30.891 0 0 2.6388 0 0 0 129.07417605973424 129.07417605973424 12.0217596488785 0 0 0 0 0 0 0 0.8494850021680094 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 2.6388 - 269 NaN NaN 154526.6 NaN 16532 4045 20576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20580 84.197 NaN 241420 35 0 18379 0.264 + 8197 GQPNSALF 8 45 417.20972140988374 NaN 0 417.2029113769531 PEAK HCD FTMS 0 0 0 20576 5520.556640625 0.12820809979541317 15 -0.22147369384765625 4 Unmodified _GQPNSALF_ ENST00000320912.8_1_4:6644107-6644191:+|nuORF 5.760428011301431 0.38822285293237185 2 Y 1 8 1.9897 0 0 0.23903 0 0 504.25674032777687 162.0560244195922 666.3127647473691 0 0 0 0 0 0 0 0 0 Y 0.23903 - 4 + NaN NaN 120099.1 NaN 16533 4045 20576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20581 84.2 NaN 269570 35 0 40242 0.261 -1 0 65 516.7661232790725 1031.517693624945 2 516.7560424804688 MULTI HCD FTMS 0 0 0 20576 20476.123046875 0.10696556899925176 16 -0.2339324951171875 5 NaN NaN 2 T[WD]VVT{M(Oxidation (M))|F} 7 -1 26.815 0 0 2.5996 0 0 165.10201474750664 0 165.10201474750664 0 7.351000952503242 0 0 0 0 0 0.2614393726401688 0 T[WD]VVT{M(Oxidation (M))|F} 2.5996 - 281 + NaN NaN 142716.2 NaN 16534 4045 20576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20582 84.203 NaN 121630 35 0 31665 0.261 + 15753 LPFPEVTL 8 35 458.2629207628245 914.511288592449 2 458.26318359375 MULTI HCD FTMS 0 0 0 20576 48215.08203125 0.12272387755186452 -4 0.10147857666015625 6 Unmodified _LPFPEVTL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 23.1484247019978 0.4234759064137959 2 VT{I|L} 3 5 44.693 0 0 4.8871 0 0 583.3018665998062 0 583.3018665998062 0 44.69273760456403 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + VT{I|L} 4.8871 + + 20 NaN NaN 120794.4 NaN 16535 4045 20576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20584 84.208 NaN 644840 35 0 78407 0.327 + 20648 PFHPPLQLFF 10 76 621.8370376216208 1241.6595223100414 2 621.837158203125 MULTI HCD FTMS 0 0 0 20583 331807.78125 0.5478402723121675 -2 0.0489501953125 1 Unmodified _PFHPPLQLFF_ ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF 71.13359017698441 0.016242133362018647 2 P[{I|L}P]Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 3 56.317 0 0 4.5356 0 0 381.1797126333034 0 381.1797126333034 0 36.65115101437635 0 0 0 2.1747425010840047 0 0 0.7614393726401688 + P[{I|L}P]Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5356 + + 381 NaN NaN 192184.7 NaN 16536 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20585 84.213 NaN 163350 35 0 27795 0.261 -1 NFSCICDSGF 10 62 603.7326867408528 1205.4508205485056 2 603.7323608398438 MULTI HCD FTMS 0 0 0 20583 83118.3359375 0.5976852781908728 2 -0.04888916015625 2 2 Carbamidomethyl (C) _NFSC(Carbamidomethyl (C))IC(Carbamidomethyl (C))DSGF_ ENSG00000184916|ENST00000331782|JAG2;nc|ENSG00000184916|Q9Y219-2|JAG2 13.90604991867851 0.3810395177745597 2 {I|L}SY{M(Oxidation (M))|F} 4 -1 39.725 0 0 3.2954 0 0 677.1915760724625 0 677.1915760724625 0 16.65282857807391 0 0 0 1.305462187404089 0 0.4247425010840047 0 {I|L}SY{M(Oxidation (M))|F} 3.2954 - 43 NaN NaN 125451 NaN 16537 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20586 84.216 NaN 152030 35 0 13458 0.262 -1 FTLTFCCS 8 53 489.7057827911909 977.3970126491819 2 489.70562744140625 MULTI HCD FTMS 0 0 0 20583 80122.015625 0.8306344806494482 2 -0.04888916015625 3 Carbamidomethyl (C) _FTLTFC(Carbamidomethyl (C))CS_ OR8K5|p.G170C|1|0.36|ENSG00000181752|chr11:56159810-56159810|C/A|missense_variant 5.230669730166228 0.5342319408533849 2 {I|L} 1 -1 6.9897 0 0 0.71513 0 0 155.09460772054564 706.1959932916624 861.2906010122081 0 0 0 0 0 0 0 0 0 {I|L} 0.71513 + + 4 + NaN NaN 134802.9 NaN 16538 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20587 84.219 NaN 258590 35 0 32890 0.261 + 10487 IPDSFFSSL 9 60 506.7530428893046 1011.4915328454092 2 506.75299072265625 MULTI HCD FTMS 0 0 0 20583 63137.86328125 0.5335603121510571 2 -0.04888916015625 4 Unmodified _IPDSFFSSL_ ENSG00000136636|ENST00000259154|KCTD3;ENSG00000160410|ENST00000291842|SHKBP1;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}SS{I|L} 4 5 45.477 0 0 4.4961 0 0 559.2640740289846 0 559.2640740289846 0 28.48767215588211 0 0 0 1.274227503252014 0 0.3807196863200844 0 + {M(Oxidation (M))|F}SS{I|L} 4.4961 + + 56 NaN NaN 137418.7 NaN 16539 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20588 84.223 NaN 107790 35 0 13636 0.261 + 6236 FPETLPESSLF 11 34 633.8161028974123 1265.6176528616245 2 633.8167724609375 MULTI HCD FTMS 0 0 0 20583 67615.5234375 0.8546887671282659 4 -0.1011199951171875 5 Unmodified _FPETLPESSLF_ ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 8.155526934196011 0.3831532958467648 2 {I|L}{M(Oxidation (M))|F} 2 9 20.969 0 0 1.6568 0 0 987.4478626935562 0 987.4478626935562 0 10.484550065040281 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.6568 + + 2 NaN NaN 97830.1 NaN 16540 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20589 84.226 NaN 112200 35 0 12367 0.264 + 23754 RRGPAGVV 8 54 406.24854258882544 810.4825322444509 2 406.7503356933594 MULTI HCD FTMS 0 0 0 20583 40793.921875 0.02938059335134423 22 -0.2805938720703125 6 Unmodified _RRGPAGVV_ ENSG00000170703|ENST00000393382|TTLL6;nc|ENSG00000170703|Q8N841-4|TTLL6 0.7936320650641473 0.540814922690045 2 P 1 7 1.5938 0 0 0.19665 0 0 352.2101456251134 358.19284998111567 710.4029956062291 0 0 0 0 0 0 0 0 0 + P 0.19665 + + 4 + NaN NaN 113889.4 NaN 16541 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20590 84.229 NaN 89403 35 0 6457.2 0.261 -1 PSTMSHMIQFS 11 46 641.2844848632812 NaN 0 641.2844848632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _PSTM(Oxidation (M))SHMIQFS_ ENSG00000189056|ENST00000428762|RELN;nc|ENSG00000189056|P78509-2|RELN;nc|ENSG00000189056|P78509-3|RELN;RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant 4.189502756095605 0.3302357306631285 2 C{I|L} 2 -1 19.464 0 0 1.52 0 0 684.2783607404311 377.1462496393188 1061.42461037975 0 0 0 0 0 1 0 0 0 C{I|L} 1.52 - 11 + NaN NaN 111241.5 NaN 16542 4046 20583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20592 84.234 NaN 11747000 35 0 2022800 0.327 + 22773 QYILFPLRF 9 85 598.8450364420323 1195.6755199508646 2 598.845458984375 MULTI HCD FTMS 0 0 0 20591 7574563.5 0.7575165725675191 3 -0.074951171875 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 181.3275282027936 9.859558525874733E-13 2 QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 90.115 0 0 7.5367 7.5367 88.017 0 0 0 3.198455542330251 3.198455542330251 3.198455542330251 3.198455542330251 0 2.591129063296272 1.3010299956639813 0 1.038106835214472 + + QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};QY{M(Oxidation (M))|F}{I|L}{I|L}P{I|L}R{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[YV]{I|L}R{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[SG]{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]{I|L}Q{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QY{I|L}P{I|L}R{M(Oxidation (M))|F} 7.5367;7.2692;6.6003;5.9588;5.2899;5.2308;5.0539;4.9126;4.8147;4.4366 +;+;-;-;-;-;-;-;-;- + 1373 + NaN NaN 821695.9 NaN 16543 4047 20591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20593 84.239 NaN 863040 35 0 46532 0.261 -1 0 101 553.8300991066263 1105.6456452800526 2 553.8302001953125 MULTI HCD FTMS 0 0 0 20591 991465.4375 0.44115579171203334 -35 0.9638748168945312 2 NaN NaN 2 D 1 -1 10.599 0 0 0.95862 0 0 61.05342191064489 926.5185640924436 987.5719860030886 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95862 - 160 + NaN NaN 217733.5 NaN 16544 4047 20591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20594 84.242 NaN 627890 35 0 87758 0.261 + -1 LSFIKMLLF 9 65 564.329909401266 1126.645265869332 2 564.3294067382812 MULTI HCD FTMS 0 0 0 20591 319104.125 0.20456995748545037 -6 0.1505279541015625 3 Oxidation (M) _LSFIKM(Oxidation (M))LLF_ REV__ENST00000445547.1_3_2:187373374-187373425:+|nuORF 22.736283301280096 0.1639198954644489 2 S{I|L}{M(Oxidation (M))|F} 3 -1 31.995 0 0 2.8398 0 0 761.4464689041077 0 761.4464689041077 0 23.57840941039747 0 0 0 0.8807196863200843 0 0 0 S{I|L}{M(Oxidation (M))|F} 2.8398 - 211 NaN NaN 186889.8 NaN 16545 4047 20591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20595 84.245 NaN 522570 35 0 50326 0.261 + 1761 CLLFLLPRF 9 56 589.8395990944568 NaN 0 589.83935546875 PEAK HCD FTMS 0 0 0 20591 52047.15625 0.6401459471062811 -1 0.0261688232421875 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLFLLPRF_ ENST00000568975.5_1_16:68386292-68391124:+|nuORF 42.09456458481378 0.07155800144855468 2 {I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 38.488 0 0 3.2681 0 0 273.11176335385386 381.22031580142817 654.332079155282 0 0 0 0 0 1.805462187404089 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2681 - 77 + NaN NaN 166480.1 NaN 16546 4047 20591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20596 84.249 NaN 105540 35 0 9106.8 0.262 + 12282 KLPALFFL 8 49 474.7995910644531 NaN 0 474.7995910644531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _KLPALFFL_ ENSG00000137628|ENST00000393743|DDX60 19.438996006549623 0.38500361301801034 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 6 20.217 0 0 2.1335 0 0 131.09410913422352 519.3295673417376 650.4236764759612 0 0 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.1335 + + 9 + NaN NaN 127845.3 NaN 16547 4047 20591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20597 84.252 NaN 56258 35 0 9486.3 0.261 + -1 MCFTSNKMQI 10 36 638.2775268554688 NaN 0 638.2775268554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))FTSNKMQI_ REV__SLC6A5|p.I341M|1|0.22|ENSG00000165970|chr11:20614716-20614716|C/G|missense_variant 1.3295316138638542 0.339046394236575 2 G 1 -1 1.9897 0 0 0.15611 0 0 598.83727431465 615.667532527339 1214.504806841989 0 0 0 0 0 0 0 0 0 G 0.15611 - 4 + NaN NaN 104392.9 NaN 16548 4047 20591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20599 84.257 NaN 1425000 35 0 70756 0.327 -1 0 115 545.3169038290621 1088.619254724924 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20598 2178876.5 0.5281398896200207 -34 0.9275054931640625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 10.713 0 0 0.98412 0 0 923.5411735255085 0 923.5411735255085 0 -0.2996322337744317 -0.2996322337744317 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.98412 - 301 + NaN NaN 322332.9 NaN 16549 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20600 84.261 NaN 2104500 35 0 467440 0.261 + 29008 TYEAQFFGF 9 99 555.2506762311408 1108.4867995290815 2 555.2508544921875 MULTI HCD FTMS 0 0 0 20598 1370799.25 0.5152917167130738 -5 0.12070465087890625 2 Unmodified _TYEAQFFGF_ ENSG00000167842|ENST00000611091|MIS12;MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant 189.77610602135977 4.071947121966932E-13 2 [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 131.74 0 0 11.884 11.884 97.572 0 0 0 19.621892823592972 105.62977812912628 19.621892823592972 20.757659435244733 0 3.1747425010840047 1.3979400086720375 2.2856668758921828 1.1549471895720984 + + [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}G{M(Oxidation (M))|F}EASTG{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EASTG{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[W{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{M(Oxidation (M))|F};[YT]EA[HC][VS]{[TV]|[{I|L}S]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}G{M(Oxidation (M))|F}EAQ[YT];{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EAQ[YT] 11.884;10.012;3.6362;3.3647;2.9264;1.3719;0.7354;0.46383 +;-;-;-;-;-;-;- + 1086 NaN NaN 400898.6 NaN 16550 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20601 84.265 NaN 864200 35 0 51430 0.261 -1 0 104 523.3037994738958 1044.5930460145914 2 523.3036499023438 MULTI HCD FTMS 0 0 0 20598 381005.59375 0.1719952676038917 52 -0.7956314086914062 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.254 0 0 879.5147054157618 0 879.5147054157618 0 2.9351437015544235 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.254 - 207 + NaN NaN 222383.7 NaN 16551 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20602 84.269 NaN 321540 35 0 37107 0.261 + 28364 TPDMQHELI 9 60 542.2614633139647 1082.5083736947292 2 542.2616577148438 MULTI HCD FTMS 0 0 0 20598 290521.28125 0.890195411156656 1 -0.03630828857421875 4 Unmodified _TPDMQHELI_ REV__ENSG00000146090|ENST00000361132|RASGEF1C;REV__nc|ENSG00000146090|Q8N431-2|RASGEF1C 29.081581746732265 0.1154664336125038 2 TPQ{M(Oxidation (M))|F}PDA 7 -1 40.143 0 0 3.7083 0 0 0 323.13413416080317 323.13413416080317 8.944794765625304 0 0 0 0 0.7302046884880937 0 0.4247425010840047 0.3054621874040891 TPQ{M(Oxidation (M))|F}PDA 3.7083 - 232 + NaN NaN 146205.2 NaN 16552 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20603 84.272 NaN 222410 35 0 77251 0.261 + 16000 LPQYDFVF 8 55 514.7578966968715 1027.501240460543 2 514.7581176757812 MULTI HCD FTMS 0 0 0 20598 191944.890625 0.6505016040569742 -2 0.04888916015625 5 Unmodified _LPQYDFVF_ CIITA|p.P452S|1|0.36|ENSG00000179583|chr16:10906846-10906846|C/T|missense_variant;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;nc|ENSG00000179583|P33076-4|CIITA;nc|ENSG00000179583|P33076|CIITA 28.486842064014134 0.3788298654084067 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 5 39.253 0 0 3.8202 0 0 616.2868483464615 0 616.2868483464615 0 14.559771852360797 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.8202 + + 81 NaN NaN 129594.9 NaN 16553 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20604 84.275 NaN 302300 35 0 23825 0.261 + 17913 MILELDPTF 9 64 547.7754196984221 1093.536286463644 2 547.7762451171875 MULTI HCD FTMS 0 0 0 20598 135497.65625 0.022602314775622273 66 -1.1313934326171875 6 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 64.23631603340823 0.01165516075559909 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[TP]{M(Oxidation (M))|F} 9 0 + 67.584 0 0 6.1803 6.1803 93.836 0 0 0 25.642492736872597 59.79241848341495 25.642492736872597 67.58409987942095 0 1.8252574989159953 2 0 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}D[TP]{M(Oxidation (M))|F} 6.1803 + + 145 NaN NaN 129265 NaN 16554 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20605 84.278 NaN 248870 35 0 25962 0.261 -1 IDLMSLKR 8 52 496.2819427726551 NaN 0 496.2593078613281 PEAK HCD FTMS 0 0 0 20598 54241.88671875 0.31187840151707696 -4 0.09783935546875 7 Oxidation (M) _IDLM(Oxidation (M))SLKR_ ENSG00000126878|ENST00000247291|AIF1L;nc|ENSG00000126878|Q9BQI0-2|AIF1L;nc|ENSG00000126878|Q9BQI0-4|AIF1L 16.942295170755138 0.3865212393897457 2 AV[C(Carbamidomethyl (C))N]{I|L}V 6 -1 18.416 0 0 1.8592 0 0 132.09717891731947 199.10883508853752 331.206014005857 0 0 0 0 0 0 0 0 0 AV[C(Carbamidomethyl (C))N]{I|L}V 1.8592 - 45 + NaN NaN 128669.8 NaN 16555 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20606 84.282 NaN 420440 35 0 41410 0.261 -1 0 64 582.8052619854803 1163.5959710377606 2 582.8052978515625 MULTI HCD FTMS 0 0 0 20598 77937.5390625 0.018696850069629612 -18 0.484893798828125 8 NaN NaN 2 {I|L}T{I|L}W 4 -1 60.433 0 0 5.1936 0 0 632.2904902636894 0 632.2904902636894 0 49.94850021680094 0 0 0 2 0 0.8494850021680094 0 {I|L}T{I|L}W 5.1936 - 181 NaN NaN 150502.6 NaN 16556 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20607 84.285 NaN 118190 35 0 18272 0.261 + -1 SMALSALKFAR 11 49 605.8355712890625 NaN 0 605.8355712890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _SM(Oxidation (M))ALSALKFAR_ REV__ENSG00000162415|ENST00000359600|ZSWIM5;REV__PIK3R3-ZSWIM5|1|fusion;REV__ZSWIM5|p.R1079Lfs*7|1|0.07|ENSG00000162415|chr1:45018776-45018777|-/AAACA|frameshift_variant 7.101721422024254 0.3219746049828039 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 2.0413 0 0 305.1004331812988 528.2936698955181 833.3941030768169 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 2.0413 - 24 + NaN NaN 102997.2 NaN 16557 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20608 84.288 NaN 365190 35 0 53748 0.263 + 4967 FATLVDVVV 9 50 481.7815578051512 961.5485626771024 2 481.7812805175781 MULTI HCD FTMS 0 0 0 20598 221625.546875 0.22413466440088528 -9 0.22566986083984375 10 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 54.773552608820026 0.024892918755467567 2 VDVVV 5 4 61.326 0 0 6.3778 0 0 432.2358570783219 0 432.2358570783219 0 43.36696871556164 0 0 0 1.8807196863200843 0 0.805462187404089 0 + VDVVV 6.3778 + + 64 NaN NaN 147050.9 NaN 16558 4048 20598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20610 84.293 NaN 1040800 35 0 299050 0.327 + 10517 IPEPIDPLF 9 73 520.7867588317437 1039.5589647302872 2 520.786865234375 MULTI HCD FTMS 0 0 0 20609 710095.25 0.7873642767106088 -3 0.08519744873046875 1 Unmodified _IPEPIDPLF_ ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant 46.020951573049366 0.037705236580089195 2 DP{I|L}{M(Oxidation (M))|F} 4 5 50.622 0 0 4.8696 0 0 549.3162789847697 0 549.3162789847697 0 42.919314505482674 0 0 0 1.7134679910804405 0 0.3054621874040891 0 + DP{I|L}{M(Oxidation (M))|F} 4.8696 + + 100 NaN NaN 267088.6 NaN 16559 4049 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20611 84.298 NaN 581340 35 0 50528 0.261 + 7102 FRKLNTKLM 9 112 575.8419496470875 1149.669346360975 2 575.8416137695312 MULTI HCD FTMS 0 0 0 20609 258382.96875 0.24540153433556644 -17 0.4621734619140625 2 Unmodified _FRKLNTKLM_ ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant 3.5964929083625545 0.32375295897743744 2 {M(Oxidation (M))|F}WR 3 8 8.0816 0 0 0.70295 0 0 165.22648855023118 492.1987703912719 657.4252589415031 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}WR 0.70295 - 58 + NaN NaN 197199.4 NaN 16560 4049 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20612 84.301 NaN 242430 35 0 44712 0.261 + 31945 VYPASPSSWLI 11 72 610.3209228515625 NaN 0 610.3209228515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VYPASPSSWLI_ ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A 39.94969957227396 0.14683382645688808 2 S 1 10 20.485 0 0 1.681 0 0 701.3746903410267 427.19858728580317 1128.5732776268298 0 0 0 0 0 1 0 0.3494850021680094 0 + S 1.681 + + 33 + NaN NaN 149065.5 NaN 16561 4049 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20613 84.304 NaN 115930 35 0 7895.2 0.261 -1 PCPQENCIISK 11 51 644.8042602539062 NaN 0 644.8042602539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _PC(Carbamidomethyl (C))PQENCIISK_ ENSG00000137975|ENST00000370565|CLCA2 2.498486711656943 0.3350326561941647 2 M 1 -1 6.9897 0 0 0.54285 0 0 679.2447561505875 474.2848299615844 1153.529586112172 0 0 0 0 0 0 0 0 0 M 0.54285 - 3 + NaN NaN 114664.3 NaN 16562 4049 20609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20615 84.309 NaN 2200100 35 0 508740 0.327 + 28540 TPQFPDMIL 9 99 531.270256467821 1060.525960002442 2 531.2705688476562 MULTI HCD FTMS 0 0 0 20614 1845662.375 0.8023775653146022 -2 0.0522308349609375 1 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 57.72198328787511 0.020768266150574023 2 K{M(Oxidation (M))|F}PDM{I|L}{I|L} 7 3 59.166 0 0 5.5789 0 0 198.09962660957189 0 198.09962660957189 0 41.99880946262611 0 0 0 1.3252574989159953 0 0.7059771852360797 0.2614393726401688 K{M(Oxidation (M))|F}PDM{I|L}{I|L} 5.5789 - 1032 NaN NaN 430933.5 NaN 16563 4050 20614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20616 84.314 NaN 356730 35 0 56965 0.261 + 21593 PYNDYFEYF 9 56 629.2600334006361 1256.505513868072 2 629.2584228515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 26.268140514670165 0.13340543277302316 2 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 5 42.607 0 0 3.3909 0 0 652.2492543583822 0 652.2492543583822 0 38.00312209084183 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.3909 + + 32 NaN NaN 142891.9 NaN 16564 4050 20614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20618 84.318 NaN 1031300 35 0 43868 0.33 -1 0 125 567.3307994004714 1132.6470458677427 2 567.3306274414062 MULTI HCD FTMS 0 0 0 20617 1014110.25 0.5519465225230521 -24 0.6283493041992188 1 NaN NaN 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 18.972 0 0 1.675 0 0 558.4379527054365 0 558.4379527054365 0 7.189485603353329 0 0 0 0 0 0.3054621874040891 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.675 - 567 + NaN NaN 320792.1 NaN 16565 4051 20617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20620 84.325 NaN 331590 35 0 29773 0.327 + -1 IFIAPGFMLF 10 58 586.314129491623 1170.613706050046 2 586.3147583007812 MULTI HCD FTMS 0 0 0 20619 123317.5078125 0.408934117026264 1 -0.0087432861328125 1 Oxidation (M) _IFIAPGFM(Oxidation (M))LF_ REV__ENSG00000184394|ENST00000641086|OR4N5 7.910154910731844 0.4334339971971892 2 {I|L}{M(Oxidation (M))|F}{[QS]|[NT]}[DG]{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 17.381 0 0 1.4848 0 0 132.0962602074431 0 132.0962602074431 0 6.32331835333439 0 0 0 0 0 0 0.4247425010840047 {I|L}{M(Oxidation (M))|F}{[QS]|[NT]}[DG]{M(Oxidation (M))|F}{I|L}{I|L} 1.4848 - 105 + NaN NaN 155292.4 NaN 16566 4052 20619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20621 84.329 NaN 170760 35 0 41506 0.263 + 15754 LPFPEVTL 8 33 458.2629207628245 914.511288592449 2 458.2630615234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LPFPEVTL_ ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1 36.04419817259434 0.28174663821216267 2 TV[EP]EP{I|L} 7 5 45.706 0 0 4.9978 0 0 131.09449965644689 0 131.09449965644689 0 45.70570735618212 0 0 0 1.4247425010840047 0 0.4247425010840047 0 TV[EP]EP{I|L} 4.9978 - 35 NaN NaN 114557.1 NaN 16567 4052 20619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20624 84.34 NaN 822740 35 0 148700 0.327 + 1311 AYNEGIINLL 10 79 560.3066200989324 1118.5986872646647 2 560.30810546875 MULTI HCD FTMS 0 0 0 20623 486039.90625 0.47651032516647235 -10 0.1815185546875 1 Unmodified _AYNEGIINLL_ ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant 87.25819977447905 0.0012128544035916314 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NEG{I|L}{I|L}N{I|L}{I|L} 10 0 + 66.626 0 0 5.9562 5.9562 87.81 0 0 0 4.894301701292093 34.3967163523986 4.894301701292093 9.164539485499262 0 2.2179001828205482 0 0.3054621874040891 1.1549471895720984 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NEG{I|L}{I|L}N{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NEG{I|L}{I|L}GG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[DG][{M(Oxidation (M))|F}T]N{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGEG{I|L}{I|L}N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L}[YQ]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[KA]{[ES]|[DT]|[{I|L}C]}P[{M(Oxidation (M))|F}T]N{I|L}{I|L} 5.9562;5.1369;4.8037;4.4448;2.8051;2.7466 +;-;-;-;-;- + 892 NaN NaN 210877.8 NaN 16568 4054 20623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20625 84.344 NaN 488060 35 0 64194 0.261 + 20649 PFHPPLQLFF 10 71 621.8370376216208 1241.6595223100414 2 621.837890625 MULTI HCD FTMS 0 0 0 20623 130327.8125 0.21518128363618388 6 -0.0660247802734375 2 Unmodified _PFHPPLQLFF_ ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF 61.357469665136826 0.03648492562855298 2 Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 6 52.295 0 0 4.2117 0 0 688.3687185518232 0 688.3687185518232 0 21.377268672201453 0 0 0 1.305462187404089 0 0 0.7302046884880937 + Q{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2117 + + 165 NaN NaN 156102 NaN 16569 4054 20623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20626 84.348 NaN 544270 35 0 58943 0.261 + 24313 RYGLFLGAIF 10 97 578.8285207061119 1155.6424884790238 2 578.8281860351562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RYGLFLGAIF_ ENSG00000101363|ENST00000373606|MANBAL 24.020572477871973 0.2864316864133941 2 {I|L}Q{I|L}{M(Oxidation (M))|F} 4 7 35.72 0 0 3.0909 0 0 636.3369007794937 0 636.3369007794937 0 2.456804241839059 0 0 0 1.329689690656103 0 0 0 {I|L}Q{I|L}{M(Oxidation (M))|F} 3.0909 - 754 NaN NaN 196530.5 NaN 16570 4054 20623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20627 84.351 NaN 200690 35 0 30386 0.262 + 22370 QPQPCIHN 8 47 468.72332763671875 NaN 0 468.72332763671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _QPQPCIHN_ REV__ENST00000377680.3_1_9:38621281-38621927:+|nuORF;REV__ENST00000484285.2_1_9:38620779-38621927:+|nuORF 7.910154910731844 0.38822285293237185 2 Q 1 -1 8.2268 0 0 0.87947 0 0 396.2855450192888 408.0698641412719 804.3554091605607 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.87947 + + 15 + NaN NaN 145148.8 NaN 16571 4054 20623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20628 84.354 NaN 392620 35 0 41626 0.261 + 30206 VIDEDGGDEYF 11 58 629.7615356445312 NaN 0 629.7615356445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VIDEDGGDEYF_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF;REV__ENST00000487086.1_1_20:1438843-1447469:-|nuORF;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 3.2813086475875832 0.3328120158028032 2 YE{M(Oxidation (M))|F} 3 -1 28.94 0 0 2.3032 0 0 165.0843687702607 649.2257525100675 814.3101212803283 0 0 0 0 0 1.4247425010840047 0 0 0 YE{M(Oxidation (M))|F} 2.3032 - 34 + NaN NaN 152736 NaN 16572 4054 20623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20631 84.366 NaN 3121700 35 0 511680 0.327 + 22774 QYILFPLRF 9 105 598.8450364420323 1195.6755199508646 2 598.8451538085938 MULTI HCD FTMS 0 0 0 20630 2089699.875 0.20898660193485383 12 -0.12158203125 1 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 131.26759243768294 0.0005280990274065272 2 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 73.263 0 0 6.1273 6.1273 84.159 0 0 0 0.047932899010078245 0.047932899010078245 0.047932899010078245 0.047932899010078245 0 2.504432191740108 1.3979400086720375 0 2.2689301784845295 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};QY{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};QY{I|L}{I|L}{M(Oxidation (M))|F}PR{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};QY{M(Oxidation (M))|F}{I|L}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}{I|L}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}SW 6.1273;6.1233;5.2729;5.2395;5.1434;4.6313;4.4218;3.8756;3.7769;3.5343 +;+;-;-;-;-;-;-;-;- + 2705 NaN NaN 561591.9 NaN 16573 4056 20630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20632 84.371 NaN 1333800 35 0 234790 0.261 + 16857 LYEQAFQLL 9 83 562.8033165348421 1123.5920801364841 2 562.8034057617188 MULTI HCD FTMS 0 0 0 20630 414688.59375 0.36339136078341167 -3 0.03314971923828125 2 Unmodified _LYEQAFQLL_ ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD 99.75527289724121 0.004270341300239591 2 [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L} 9 0 + 98.004 0 0 8.7224 8.7224 93.039 0 0 0 16.980523937757752 85.67480053903269 16.980523937757752 9.208187539523749 0 2.3494850021680094 1.2218487496163564 0.3494850021680094 1.372363747448347 + + [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]EQA{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}[AG]{I|L}{I|L} 8.7224;7.9028;7.3313;6.4374;5.8658;5.6178 +;-;-;-;-;- + 427 NaN NaN 287956.9 NaN 16574 4056 20630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20633 84.374 NaN 889050 35 0 187100 0.261 -1 0 73 615.4040300694492 614.3967536028491 1 615.4033813476562 MULTI HCD FTMS 0 0 0 20630 541205.625 0.8782227128231841 -14 0.26042938232421875 3 NaN NaN 2 [YN]AW 4 -1 31.287 0 0 5.0922 0 0 0 77.1510871684981 77.1510871684981 28.187587626244124 0 0 0 0 0 1.6989700043360187 0 0.3494850021680094 [YN]AW 5.0922 - 21 NaN NaN 238224.1 NaN 16575 4056 20630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20635 84.379 NaN 1865700 35 0 88350 0.326 + 9988 IEKLKERSS 9 124 545.3169038290621 1088.619254724924 2 545.3168334960938 MULTI HCD FTMS 0 0 0 20634 2987743 0.724201788505677 -25 0.5480117797851562 1 Unmodified _IEKLKERSS_ ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F}KYYKN 6 8 15.522 0 0 1.4258 0 0 227.12037856269689 0 227.12037856269689 0 5.037436345664894 0 0 0 0.5 0 0 0.28872548999643577 {M(Oxidation (M))|F}KYYKN 1.4258 - 219 NaN NaN 379882 NaN 16576 4057 20634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20636 84.383 NaN 1319800 35 0 191540 0.261 + -1 LSFIKMLLF 9 100 564.329909401266 1126.645265869332 2 564.33056640625 MULTI HCD FTMS 0 0 0 20634 877038.1875 0.5622480271290491 4 -0.04001617431640625 2 Oxidation (M) _LSFIKM(Oxidation (M))LLF_ REV__ENST00000445547.1_3_2:187373374-187373425:+|nuORF 36.12702656103203 0.08312389501731911 2 {[TV]|[{I|L}S]}PK{M(Oxidation (M))|F}Y{I|L}{I|L} 8 -1 45.174 0 0 4.0096 0 0 0 162.05608545474846 162.05608545474846 27.07687041368656 0 0 0 0 2.118415180652539 2 0 0 {[TV]|[{I|L}S]}PK{M(Oxidation (M))|F}Y{I|L}{I|L} 4.0096 - 2131 + NaN NaN 286589.3 NaN 16577 4057 20634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20638 84.388 NaN 2378300 35 0 540680 0.327 + 29009 TYEAQFFGF 9 96 555.2506762311408 1108.4867995290815 2 555.2514038085938 MULTI HCD FTMS 0 0 0 20637 1493932.75 0.5615783430005403 5 -0.04724884033203125 1 Unmodified _TYEAQFFGF_ ENSG00000167842|ENST00000611091|MIS12;MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant 205.7785088242617 1.0412822304099307E-17 2 [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 131.98 0 0 11.906 11.906 97.572 0 0 0 19.99082389439755 102.6567472546322 19.99082389439755 20.75765943524472 0 3.25 1.5228787452803376 2.2856668758921828 1.1549471895720984 + + [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}G{M(Oxidation (M))|F}EA{[MG]|[TS]}G{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[W{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{[MG]|[TS]}G{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][PG]Q{M(Oxidation (M))|F}S[YT];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{[{M(Oxidation (M))|F}D]|MM}AA{[MG]|[TS]}G{M(Oxidation (M))|F};[YT]EA{[CA]|SS}[HM][{I|L}A];[Y{M(Oxidation (M))|F}][PG][AG]{M(Oxidation (M))|F}S[YT];{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}G{M(Oxidation (M))|F}EAQ[YT] 11.906;10.034;3.5847;2.9724;2.9541;2.7659;2.6111;1.784;1.6199;0.82583 +;-;-;-;-;-;-;-;-;- + 1084 NaN NaN 453748.3 NaN 16578 4058 20637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20639 84.393 NaN 951610 35 0 47616 0.261 + -1 ERCGGPWAL 9 104 523.2478987057569 1044.4812444783138 2 523.7510375976562 MULTI HCD FTMS 0 0 0 20637 430211.6875 0.9698099347024782 -1 0.00926971435546875 2 Carbamidomethyl (C) _ERC(Carbamidomethyl (C))GGPWAL_ REV__ENST00000223023.4_1_7:123349191-123389113:-|nuORF 15.847184025352803 0.2234401846867398 2 E{M(Oxidation (M))|F}[WH]D 5 -1 27.263 0 0 2.6102 0 0 0 327.1442965143188 327.1442965143188 13.837187502365932 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 E{M(Oxidation (M))|F}[WH]D 2.6102 - 566 + NaN NaN 231305.5 NaN 16579 4058 20637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20641 84.397 NaN 945730 35 0 46395 0.327 -1 YLWHGCPL 8 101 523.2478987057569 1044.4812444783138 2 523.7518920898438 MULTI HCD FTMS 0 0 0 20640 443604.125 1 0 0 1 Carbamidomethyl (C) _YLWHGC(Carbamidomethyl (C))PL_ ENST00000481510.1_1_2:132515879-132524290:+|nuORF 11.114462752807354 0.5120171699125776 2 E{M(Oxidation (M))|F} 2 -1 24.776 0 0 2.3721 0 0 0 765.312153293889 765.312153293889 11.667184309669869 0 0 0 0 0.3807196863200844 0 0 0 E{M(Oxidation (M))|F} 2.3721 - 886 + NaN NaN 233376.9 NaN 16580 4059 20640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20642 84.402 NaN 678500 35 0 105190 0.261 + 26546 SVMLELVAL 9 58 495.7805526639806 989.5465523947612 2 495.7811584472656 MULTI HCD FTMS 0 0 0 20640 339687.03125 0.45279322150533335 -7 0.07233428955078125 2 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 92.8221339359638 0.0044520161739443126 2 {I|L}E{I|L}VA{I|L} 6 3 78.498 0 0 7.9327 0 0 333.13463027168126 0 333.13463027168126 0 60.873030232838644 0 0 0 2.56295299324845 0 1.6237125054200234 0 + {I|L}E{I|L}VA{I|L} 7.9327 + + 242 NaN NaN 189841.1 NaN 16581 4059 20640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20644 84.406 NaN 3821800 35 0 430000 0.327 -1 0 108 582.8052619854803 1163.5959710377606 2 582.8052368164062 MULTI HCD FTMS 0 0 0 20643 2519784.25 0.6044844229978038 -6 0.0660247802734375 1 NaN NaN 2 G{I|L}T{I|L}VNQSW 9 -1 95.945 0 0 8.2456 0 0 147.08432814692065 0 147.08432814692065 0 65.76442144502707 0 0 0 2.2302046884880937 0 1.579689690656103 1.916386562212267 G{I|L}T{I|L}VNQSW 8.2456 - 3690 + NaN NaN 671251.4 NaN 16582 4060 20643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20645 84.411 NaN 507170 35 0 72939 0.262 + 4968 FATLVDVVV 9 48 481.7815578051512 961.5485626771024 2 481.7810974121094 MULTI HCD FTMS 0 0 0 20643 192938.234375 0.19512257057680402 3 -0.028961181640625 2 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 54.773552608820026 0.024892918755467567 2 VDVVV 5 4 61.37 0 0 6.3824 0 0 432.23689467597814 0 432.23689467597814 0 33.92281585743653 0 0 0 1.8807196863200843 0 0.8494850021680094 0 + VDVVV 6.3824 + + 78 NaN NaN 165400.4 NaN 16583 4060 20643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20646 84.414 NaN 284350 35 0 29890 0.261 + 13663 KYPENFFLL 9 52 585.8128728003827 NaN 0 585.8126220703125 PEAK HCD FTMS 0 0 0 20643 104906.171875 0.26254805857023744 4 -0.04140472412109375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 38.175570920033316 0.08412639609110066 2 {I|L}{M(Oxidation (M))|F} 2 8 20.969 0 0 1.7928 0 0 131.0939961222653 775.3424064148609 906.4364025371262 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7928 - 32 + NaN NaN 130459.9 NaN 16584 4060 20643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20648 84.419 NaN 112610 35 0 16374 0.411 -1 NHCVYFYGD 9 65 587.7354736328125 NaN 0 587.7354736328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _NHC(Carbamidomethyl (C))VYFYGD_ ENSG00000123838|ENST00000367070|C4BPA 1.844237919475145 0.28630992268396543 2 Y 1 -1 4.6041 0 0 0.39269 0 0 113.02263587495356 893.311955310136 1006.3345911850896 0 0 0 0 0 0 0 0 0 Y 0.39269 + + 10 + NaN NaN 125633.3 NaN 16585 4061 20647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20650 84.426 NaN 826070 35 0 92101 0.327 + -1 IIRKFWFV 8 102 575.8419496470875 1149.669346360975 2 575.8419799804688 MULTI HCD FTMS 0 0 0 20649 588825.375 0.5592421635983517 -4 0.0381622314453125 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IIRKFWFV_ REV__ENST00000424459.7_2_5:56471425-56471509:+|nuORF 2.577480529830294 0.5381683276125971 2 {I|L}GE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 5 -1 11.682 0 0 1.0162 0 0 538.4076408939812 0 538.4076408939812 0 4.6040937697618745 0 0 0 0 0 0 0 {I|L}GE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.0162 - 119 + NaN NaN 229348.3 NaN 16586 4062 20649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20651 84.431 NaN 231620 35 0 36504 0.261 + 18370 MPLSEDFVWM 10 62 635.7778930664062 NaN 0 635.7778930664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 41.8396318013385 0.12600247897898018 2 WV{M(Oxidation (M))|F}D 4 9 32.493 0 0 2.5594 0 0 165.0464535127756 554.2282198541624 719.274673366938 0 0 0 0 0 1.3252574989159953 0 0.3807196863200844 0 WV{M(Oxidation (M))|F}D 2.5594 - 55 + NaN NaN 143571.6 NaN 16587 4062 20649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20653 84.435 NaN 1382200 35 0 56956 0.327 -1 0 119 553.8300991066263 1105.6456452800526 2 553.8301391601562 MULTI HCD FTMS 0 0 0 20652 918510.125 0.40869408661549406 -19 0.2765045166015625 1 NaN NaN 2 D 1 -1 8.1433 0 0 0.73652 0 0 105.07938086469183 882.4925582650815 987.5719391297733 0 0 0 0 0 0.3054621874040891 0 0.3494850021680094 0 D 0.73652 - 146 + NaN NaN 298851.6 NaN 16588 4063 20652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20654 84.44 NaN 906860 35 0 209250 0.261 + 28541 TPQFPDMIL 9 86 531.270256467821 1060.525960002442 2 531.2706909179688 MULTI HCD FTMS 0 0 0 20652 766739.3125 0.3333298826090779 11 -0.1236419677734375 2 Unmodified _TPQFPDMIL_ ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF 32.78568957990786 0.09846250359632436 2 V{M(Oxidation (M))|F}[DP]M{I|L}{I|L} 7 3 40.054 0 0 3.7768 0 0 227.12404067207189 0 227.12404067207189 0 26.07463842698671 0 0 0 1.2302046884880937 0 0.3807196863200844 0 V{M(Oxidation (M))|F}[DP]M{I|L}{I|L} 3.7768 - 423 NaN NaN 229447.7 NaN 16589 4063 20652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20655 84.443 NaN 371140 35 0 47450 0.261 + 16539 LTQEEIEDSL 10 73 588.787044000678 NaN 0 588.7879028320312 PEAK HCD FTMS 0 0 0 20652 229280.5625 0.5325732255901876 6 -0.0599365234375 3 Unmodified _LTQEEIEDSL_ REV__ENSG00000151418|ENST00000367382|ATP6V1G3;REV__nc|ENSG00000151418|Q96LB4-4|ATP6V1G3 27.628801355627647 0.21883835723996892 2 T{[DS]|[MA]|[CV]|TT}K 4 -1 22.167 0 0 1.8857 0 0 113.08067605371555 628.2377413385374 741.318417392253 0 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0.8494850021680094 T{[DS]|[MA]|[CV]|TT}K 1.8857 - 42 + NaN NaN 140794.5 NaN 16590 4063 20652 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20657 84.448 NaN 1326400 35 0 41553 0.327 -1 0 126 567.3307994004714 1132.6470458677427 2 567.3311767578125 MULTI HCD FTMS 0 0 0 20656 1235400.875 0.6723876589139945 -11 0.1141357421875 1 NaN NaN 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 18.875 0 0 1.6665 0 0 558.4380137405927 0 558.4380137405927 0 7.616115387519255 0 0 0 0 0 0.25 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6665 - 537 + NaN NaN 316319.2 NaN 16591 4064 20656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20658 84.452 NaN 667670 35 0 26962 0.261 -1 LRLCKAWV 8 97 523.3030914298448 1044.5916299264895 2 523.3028564453125 MULTI HCD FTMS 0 0 0 20656 342902.28125 0.5467993504707971 -1 0.01244354248046875 2 Carbamidomethyl (C) _LRLC(Carbamidomethyl (C))KAWV_ ENST00000332065.9_1_17:74078001-74078805:-|nuORF 5.230669730166228 0.5342319408533849 2 Q 1 -1 12.104 0 0 1.1587 0 0 502.2981945090277 411.22373377017817 913.5219282792059 0 0 0 0 0 0.75 0 0 0 Q 1.1587 - 237 + NaN NaN 195792.9 NaN 16592 4064 20656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20660 84.457 NaN 1220900 35 0 251630 0.327 + 1312 AYNEGIINLL 10 80 560.3066200989324 1118.5986872646647 2 560.306640625 MULTI HCD FTMS 0 0 0 20659 891558.125 0.8740777178696124 1 -0.012420654296875 1 Unmodified _AYNEGIINLL_ ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant 100.7086487251713 0.0001804935997887888 2 EG{I|L}{I|L}N{I|L}{I|L} 7 3 74.108 0 0 6.6251 0 0 348.14351088691564 0 348.14351088691564 0 41.76652181197026 0 0 0 2.4674165578762484 0 0.6382104921644451 0.4247425010840047 + EG{I|L}{I|L}N{I|L}{I|L} 6.6251 + + 757 NaN NaN 272891.9 NaN 16593 4065 20659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20661 84.462 NaN 773360 35 0 37171 0.261 + 18526 MSVVNVGSSLW 11 106 589.7957099364872 1177.5768669397744 2 589.7965698242188 MULTI HCD FTMS 0 0 0 20659 512427.625 0.9155062660738708 4 -0.03821563720703125 2 Unmodified _MSVVNVGSSLW_ ZNF17|p.F394Lfs*63|1|0.14|ENSG00000186272|chr19:57420672-57420675|TTCT/-|frameshift_variant 34.93206674587334 0.1695891461859059 2 {[DS]|[MA]|[CV]|TT}AKKC{I|L}D{I|L}W 10 8 + 58.528 0 0 4.9702 4.9702 85.741 0 0 0 7.269987279362624 25.106967663961925 7.269987279362624 8.317598791923686 0 2.1549471895720984 0 0 0.9634679910804405 {[DS]|[MA]|[CV]|TT}AKKC{I|L}D{I|L}W;[{I|L}T][NS]{[QC]|[C(Carbamidomethyl (C))A]}{I|L}T{I|L}W;{[WS]|[C(Carbamidomethyl (C)){I|L}]}KKC{I|L}D{I|L}{[DA]|[EG]};{[DS]|[MA]|[CV]|TT}{[NV]|[RG]}{[QC]|[C(Carbamidomethyl (C))A]}{I|L}T{I|L}W;{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}W[C(Carbamidomethyl (C))K]{I|L}W;{[DS]|[MA]|[CV]|TT}A{I|L}W[C(Carbamidomethyl (C))K]{I|L}W;{[WS]|[C(Carbamidomethyl (C)){I|L}]}KKDDT{I|L}W;{[DS]|[MA]|[CV]|TT}AKKDDT{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}D{I|L}[WP]{M(Oxidation (M))|F}[PS];[{I|L}T]{[DS]|[MA]|[CV]|TT}{I|L}C{I|L}D{I|L}{[DA]|[EG]} 4.9702;4.2639;4.1897;4.0561;3.4582;3.4522;3.3281;3.3267;3.1999;3.1764 -;-;-;-;-;-;-;-;-;- 3549 NaN NaN 206401 NaN 16594 4065 20659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20662 84.465 NaN 416060 35 0 132280 0.261 + -1 SLKLYCNDDM 10 55 609.2612104538828 1216.5078679745654 2 609.2617797851562 MULTI HCD FTMS 0 0 0 20659 108760.7421875 0.3860114986791503 -4 0.0382232666015625 3 Oxidation (M) _SLKLYCNDDM(Oxidation (M))_ REV__ENSG00000117091|ENST00000368046|CD48 2.9952420565917617 0.4594494122822477 2 DA 2 -1 12.474 0 0 1.0254 0 0 0 1027.4303072099372 1027.4303072099372 12.196663469151312 0 0 0 0 0 0 0 0 DA 1.0254 - 2 + NaN NaN 143982.1 NaN 16595 4065 20659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20665 84.476 NaN 735860 35 0 91903 0.327 + 21516 PYISNIYLI 9 65 548.3081285878604 1094.6017042425208 2 548.3079833984375 MULTI HCD FTMS 0 0 0 20664 382336.125 0.25868089942489025 -10 0.09751129150390625 1 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 65.23502041540118 0.010630085227462206 2 [Y{I|L}]S[NP]{I|L}Y{I|L}{I|L} 9 2 + 78.707 0 0 7.1905 7.1905 86.942 0 0 0 10.31234684152075 16.478174818886373 10.31234684152075 2.0732594320775632 0 1.3494850021680094 1.5228787452803376 0.3807196863200844 1.031234684152075 [Y{I|L}]S[NP]{I|L}Y{I|L}{I|L};[Y{I|L}]P[NS]{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]{I|L}Y{I|L}{I|L};[Y{I|L}]PE[KG]Y{I|L}{I|L};[Y{I|L}]S[NP]Y{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KG]Y{I|L}{I|L};[Y{I|L}]P[NS]Y{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]Y{I|L}{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AP[RH]{I|L} 7.1905;7.001;6.2483;6.1771;5.6115;5.4244;5.4221;4.6694;0.80624 -;-;+;-;-;-;-;-;- + 502 NaN NaN 214630 NaN 16596 4067 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20666 84.48 NaN 332440 35 0 50932 0.261 + 27468 SYVVTRLIK 9 58 539.833192154855 NaN 0 539.8333740234375 PEAK HCD FTMS 0 0 0 20664 215445.015625 0.8201991441626378 1 -0.01204681396484375 2 Unmodified _SYVVTRLIK_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 10.073929032068715 0.24642998803896465 2 K{I|L}{I|L}V 4 7 18.443 0 0 1.7114 0 0 132.09907308752003 489.19907556705317 621.2981486545732 0 0 0 0 0 0 0 0 0 K{I|L}{I|L}V 1.7114 - 26 + NaN NaN 160360.7 NaN 16597 4067 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20667 84.484 NaN 241310 35 0 37637 0.263 + -1 LCSGGCGAK 9 58 419.1834643829054 836.3523758326108 2 419.685546875 MULTI HCD FTMS 0 0 0 20664 103379.4765625 0.12740115554160245 -9 0.0882415771484375 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LCSGGCGAK_ REV__ENST00000561455.5_1_15:83355747-83377528:-|nuORF 7.289230182591677 0.29575926068275815 2 SW 2 -1 22.351 0 0 2.6725 0 0 545.2304713910078 0 545.2304713910078 0 7.882170453879578 0 0 0 0 0 0.28872548999643577 0 SW 2.6725 - 39 + NaN NaN 131670.3 NaN 16598 4067 20664 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20670 84.495 NaN 1143000 35 0 217180 0.327 + 16858 LYEQAFQLL 9 69 562.8033165348421 1123.5920801364841 2 562.8032836914062 MULTI HCD FTMS 0 0 0 20669 365162.78125 0.31999192161501977 10 -0.1234588623046875 1 Unmodified _LYEQAFQLL_ ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD 70.33199760932243 0.0089807860198535 2 [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L} 9 0 + 88.599 0 0 7.8853 7.8853 91.858 0 0 0 16.61159286695316 71.29161586377087 16.61159286695316 9.208187539523749 0 2.3494850021680094 1.0969100130080565 0.3494850021680094 0.3807196863200844 + + [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]EQA{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Y{I|L}]E[AG]A{M(Oxidation (M))|F}[AG]{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}Q{I|L}{I|L};[Q{I|L}][YE]A{M(Oxidation (M))|F}[AG]{I|L}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[{I|L}A]EYQ{I|L}{I|L} 7.8853;7.0658;6.7269;5.9113;5.3981;4.5785;3.0441 +;-;-;-;-;-;- + 299 NaN NaN 283765.7 NaN 16599 4069 20669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20671 84.499 NaN 358980 35 0 34731 0.261 + 13602 KYPENFFLL 9 71 585.8129910707257 1169.6114292082514 2 585.8130493164062 MULTI HCD FTMS 0 0 0 20669 94377.0546875 0.31729712337546356 -13 0.12847900390625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 47.594388314883695 0.03493607795751234 2 [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 60.27 0 0 5.153 5.153 87.176 0 0 0 5.959471728614574 43.28009063929706 5.959471728614574 9.208187539523749 0 1.9361818737241734 0 0.4247425010840047 0.3807196863200844 + + [YK][EP]N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK][EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK][EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YV][WD][KS]{M(Oxidation (M))|F}{I|L}{I|L};[YV][TP]GN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV][TP]GGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YV][TP]GN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L};[YK]{[YD]|[{M(Oxidation (M))|F}M]}{[VA]|[{I|L}G]}W{I|L}{I|L};[YV][WD][KS]{I|L}{M(Oxidation (M))|F}{I|L} 5.153;4.3657;4.0029;3.2157;2.6873;2.6617;1.8782;1.7815;1.6513;1.5372 +;-;-;-;-;-;-;-;-;- + 291 NaN NaN 160306.4 NaN 16600 4069 20669 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20673 84.504 NaN 2089400 35 0 94286 0.327 + 29596 VAISLTVGSSR 11 117 545.3169038290621 1088.619254724924 2 545.31689453125 MULTI HCD FTMS 0 0 0 20672 2899070 0.7027082580406524 -12 0.11591339111328125 1 Unmodified _VAISLTVGSSR_ REV__SEC23A|p.A267T|1|0.5|ENSG00000100934|chr14:39085791-39085791|C/T|missense_variant 10.150570793230772 0.3686401556411756 2 V{[QN]|[E{I|L}]|[KN]}PYKN 7 -1 16.356 0 0 1.5025 0 0 227.12050063300939 0 227.12050063300939 0 4.366743181524761 0 0 0 0.4247425010840047 0 0.6747425010840047 0.28872548999643577 V{[QN]|[E{I|L}]|[KN]}PYKN 1.5025 - 281 NaN NaN 414525.2 NaN 16601 4070 20672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20674 84.508 NaN 918160 35 0 102670 0.261 + 441 ALGKIRCFGF 10 96 556.3083321219077 NaN 0 556.3087158203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _ALGKIRCFGF_ ENSG00000144130|ENST00000688554|NT5DC4;nc|ENSG00000144130|Q86YG4|NT5DC4 7.289230182591677 0.3339457182549222 2 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G 7 7 35.481 0 0 3.1947 0 0 166.19338137870028 162.0559481256469 328.2493295043472 0 0 0 0 0 0 0 1.2249073637206092 0 G{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]{M(Oxidation (M))|F}G 3.1947 - 669 + NaN NaN 226699 NaN 16602 4070 20672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20675 84.512 NaN 272380 35 0 30883 0.261 + 9559 HRILLLHLWG 10 59 629.3826228953197 NaN 0 629.2587280273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HRILLLHLWG_ ENST00000454036.6_2_20:44673649-44676200:+|nuORF 1.844237919475145 0.33860587697544825 2 YE{M(Oxidation (M))|F} 3 10 14.693 0 0 1.1691 0 0 165.32835342705158 649.2256198868297 814.5539733138812 0 0 0 0 0 0 0 0 0 YE{M(Oxidation (M))|F} 1.1691 - 15 + NaN NaN 129524.2 NaN 16603 4070 20672 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20677 84.517 NaN 185590 35 0 20358 0.327 + 26944 SYLEVLLKL 9 48 539.3315770443916 NaN 0 539.3313598632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SYLEVLLKL_ ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6;nc|ENSG00000143870|Q15084-3|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6 13.042465956692817 0.23204487237355156 2 K{I|L}{I|L}V 4 7 20.349 0 0 1.8901 0 0 131.09433384086202 489.1995028131469 620.2938366540089 0 0 0 0 0 0.3807196863200844 0 0 0 K{I|L}{I|L}V 1.8901 - 16 + NaN NaN 111563.5 NaN 16604 4071 20676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20678 84.521 NaN 143930 35 0 13212 0.261 + 20650 PFHPPLQLFF 10 49 621.8375854492188 NaN 0 621.8375854492188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PFHPPLQLFF_ ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF 19.256988751693697 0.2866536677172102 2 {M(Oxidation (M))|F}{I|L} 2 8 13.583 0 0 1.094 0 0 165.08110691190342 813.4045504205686 978.4856573324721 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 1.094 - 16 + NaN NaN 119940.8 NaN 16605 4071 20676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20679 84.525 NaN 418350 35 0 88364 0.262 + 25913 SNWTSNFII 9 55 541.2695619486816 1080.524570964163 2 541.7715454101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SNWTSNFII_ ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.445 0 0 3.2804 0 0 689.2768949430857 0 689.2768949430857 0 30.84121882396211 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.2804 + + 58 NaN NaN 151761.2 NaN 16606 4071 20676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20681 84.534 NaN 3726800 35 0 395790 0.327 -1 0 95 582.8052619854803 1163.5959710377606 2 582.8054809570312 MULTI HCD FTMS 0 0 0 20680 2638911 0.6330623715810421 6 -0.06517791748046875 1 NaN NaN 2 C{I|L}T{I|L}VNSQW 9 -1 87.252 0 0 7.4985 0 0 101.0760258246731 0 101.0760258246731 0 55.05903476495184 0 0 0 2.4604093769761874 0 1.5484550065040281 1.9361818737241734 C{I|L}T{I|L}VNSQW 7.4985 - 2378 + NaN NaN 495317.4 NaN 16607 4072 20680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20682 84.539 NaN 1147500 35 0 244660 0.261 + 29010 TYEAQFFGF 9 92 555.2506762311408 1108.4867995290815 2 555.2516479492188 MULTI HCD FTMS 0 0 0 20680 508654.3125 0.19120622797366815 19 -0.283294677734375 2 Unmodified _TYEAQFFGF_ ENSG00000167842|ENST00000611091|MIS12;MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant 144.35026110057638 1.4798765981150827E-05 2 [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 9 0 + 124.11 0 0 11.196 11.196 97.52 0 0 0 19.621892823592972 109.7953213149465 19.621892823592972 20.757659435244733 0 2.9247425010840047 1.3979400086720375 1.7728787452803374 1.1549471895720984 + + [YT]EAQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F};[YT]EA[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}G{M(Oxidation (M))|F} 11.196;9.3236 +;- + 599 NaN NaN 269152.5 NaN 16608 4072 20680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20684 84.543 NaN 594110 35 0 97190 0.327 + 26547 SVMLELVAL 9 55 495.7805526639806 989.5465523947612 2 495.78076171875 MULTI HCD FTMS 0 0 0 20683 329511.59375 0.43922965062393493 7 -0.09152984619140625 1 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 81.61307344734483 0.005330412723537057 2 {I|L}E{I|L}VA{I|L} 6 3 76.177 0 0 7.6982 0 0 333.1349049298844 0 333.1349049298844 0 67.50508444608478 0 0 0 2.274227503252014 0 1.555462187404089 0 + {I|L}E{I|L}VA{I|L} 7.6982 + + 133 NaN NaN 174488.3 NaN 16609 4073 20683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20685 84.548 NaN 1070000 35 0 415620 0.261 -1 0 79 562.3440692743559 1122.6735856155117 2 562.3447875976562 MULTI HCD FTMS 0 0 0 20683 247374.65625 0.45466141749107186 -9 0.09542083740234375 2 NaN NaN 2 [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L} 8 -1 36.661 0 0 3.2655 0 0 0 127.15262549271792 127.15262549271792 4.4377479642975715 0 0 0 0 0 1.154901959985743 0 0.3252574989159953 [Y{I|L}]EQA{M(Oxidation (M))|F}Q{I|L} 3.2655 - 445 NaN NaN 256829.2 NaN 16610 4073 20683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20686 84.551 NaN 466330 35 0 129760 0.261 + 25914 SNWTSNFII 9 52 541.2695619486816 1080.524570964163 2 541.270751953125 MULTI HCD FTMS 0 0 0 20683 255433.53125 0.611252119392989 -9 0.09542083740234375 3 Unmodified _SNWTSNFII_ ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.35 0 0 689.2766969650503 0 689.2766969650503 0 30.713337517843655 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.35 + + 24 NaN NaN 151697 NaN 16611 4073 20683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20687 84.554 NaN 233460 35 0 31727 0.261 + 4969 FATLVDVVV 9 41 481.7815578051512 961.5485626771024 2 481.7815246582031 MULTI HCD FTMS 0 0 0 20683 201947.328125 0.20423366012710414 16 -0.23907470703125 4 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 54.773552608820026 0.024892918755467567 2 VDVVV 5 4 59.737 0 0 6.2126 0 0 432.2369557111344 0 432.2369557111344 0 54.25250945692483 0 0 0 1.8494850021680094 0 0.805462187404089 0 + VDVVV 6.2126 + + 51 NaN NaN 145962.9 NaN 16612 4073 20683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20689 84.559 NaN 200340 35 0 56289 0.327 + -1 PLGWCYYVC 9 41 609.2612104538828 1216.5078679745654 2 609.26025390625 MULTI HCD FTMS 0 0 0 20688 133852.46875 0.47506656377001044 4 -0.04064178466796875 1 2 Carbamidomethyl (C) _PLGWC(Carbamidomethyl (C))YYVC(Carbamidomethyl (C))_ REV__ENST00000416382.6_1_10:11374735-11374927:+|nuORF 2.302733041254933 0.33356062215410776 2 S 1 -1 3.9794 0 0 0.32712 0 0 100.05152270714287 1026.4258151628849 1126.4773378700277 0 0 0 0 0 0 0 0 0 S 0.32712 - 3 + NaN NaN 139723.5 NaN 16613 4074 20688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20691 84.565 NaN 1196600 35 0 38889 0.327 -1 0 123 567.3307994004714 1132.6470458677427 2 567.3308715820312 MULTI HCD FTMS 0 0 0 20690 1837334.25 1 0 0 1 NaN NaN 2 [YT]VV[PA]HTV{M(Oxidation (M))|F} 10 -1 [YT]VV[PA]HTV + + 13.495 -5.7604 -0.59535 1.1914 1.1914 59.685 0 0 0 0 1.3434433081455648 0 0 0 0 0 0 0 [YT]VV[PA]HTV{M(Oxidation (M))|F} 1.1914 - 609 + NaN NaN 274452.1 NaN 16614 4075 20690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20692 84.57 NaN 1225500 35 0 59133 0.261 -1 0 115 553.8300991066263 1105.6456452800526 2 553.8302612304688 MULTI HCD FTMS 0 0 0 20690 1730276.75 0.7698923035097469 -7 0.07738494873046875 2 NaN NaN 2 Q 1 -1 7.6587 0 0 0.69269 0 0 607.3791826578198 367.1967810524113 974.5759637102311 0 0 0 0 0 0.3054621874040891 0 0 0 Q 0.69269 - 242 + NaN NaN 289501.9 NaN 16615 4075 20690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20693 84.573 NaN 530850 35 0 79774 0.261 + 1313 AYNEGIINLL 10 83 560.3066200989324 1118.5986872646647 2 560.3092041015625 MULTI HCD FTMS 0 0 0 20690 264973.4375 0.25977821417539815 11 -0.16192626953125 3 Unmodified _AYNEGIINLL_ ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant 67.83816525789305 0.020146919733137328 2 N{[C(Carbamidomethyl (C))E]|[WC]}{I|L}N{I|L}{I|L} 7 4 48.262 0 0 4.3145 0 0 244.17767531562657 0 244.17767531562657 0 25.466751011209183 0 0 0 0.5 0 0.5994850021680094 1.079689690656103 N{[C(Carbamidomethyl (C))E]|[WC]}{I|L}N{I|L}{I|L} 4.3145 - 486 NaN NaN 165597 NaN 16616 4075 20690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20694 84.577 NaN 326330 35 0 25594 0.261 + 32811 WTINNFSF 8 67 514.7452985444357 1027.4760441556714 2 514.7454833984375 MULTI HCD FTMS 0 0 0 20690 135953.703125 0.2771780508282686 -7 0.07738494873046875 4 Unmodified _WTINNFSF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 85.27202061508552 0.016688148945806582 2 {[WT]|[RM]}{I|L}MP{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 2 {[WT]|[RM]}{I|L} + + 59.196 13.072 3.2663 5.7613 5.7613 63.552 0 0 0 0 44.24742501084005 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {[WT]|[RM]}{I|L}MP{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.7613 - 149 + NaN NaN 162386.2 NaN 16617 4075 20690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20696 84.581 NaN 834760 35 0 41791 0.327 + -1 LSRRLLMVF 9 124 575.8419496470875 1149.669346360975 2 575.8417358398438 MULTI HCD FTMS 0 0 0 20695 406901.9375 0.38645875256286516 10 -0.14653778076171875 1 Oxidation (M) _LSRRLLM(Oxidation (M))VF_ REV__ENSG00000146918|ENST00000356309|NCAPG2;REV__ENST00000467785.5_1_7:158448006-158486027:-|nuORF;REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F}{I|L}GE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 6 -1 11.911 0 0 1.0361 0 0 391.3354973392937 0 391.3354973392937 0 0.9421249706470309 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}GE{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.0361 - 290 + NaN NaN 241024 NaN 16618 4076 20695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20697 84.586 NaN 419860 35 0 11948 0.261 -1 LRLCKAWV 8 99 523.3030914298448 1044.5916299264895 2 523.3027954101562 MULTI HCD FTMS 0 0 0 20695 240817.828125 0.3840132865856752 11 -0.16252899169921875 2 Carbamidomethyl (C) _LRLC(Carbamidomethyl (C))KAWV_ ENST00000332065.9_1_17:74078001-74078805:-|nuORF 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2919 0 0 879.5128468227771 0 879.5128468227771 0 0.6639311543577975 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2919 - 402 + NaN NaN 171609.2 NaN 16619 4076 20695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20699 84.59 NaN 452470 35 0 107280 0.327 + 35695 YYLDAVVSF 9 52 538.7686946212407 1075.5228363092813 2 538.7698974609375 MULTI HCD FTMS 0 0 0 20698 108299.2421875 0.16826435818807306 -5 0.05600738525390625 1 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 37.97399986684836 0.07464525285885698 2 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 9 5 + 65.824 0 0 6.1202 6.1202 93.697 0 0 0 17.649087242336776 42.523656471886326 17.649087242336776 65.82441255669814 0 1.3494850021680094 1.5228787452803376 0.4247425010840047 0 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 6.1202 - 61 NaN NaN 163715.8 NaN 16620 4077 20698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20700 84.595 NaN 98043 35 0 13799 0.261 + 22508 QRRVLRNLR 9 50 605.8848876953125 NaN 0 605.8848876953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QRRVLRNLR_ ENSG00000183856|ENST00000361170|IQGAP3 1.844237919475145 0.28630992268396543 2 G 1 9 3.4949 0 0 0.28913 0 0 620.3978280255875 528.2882174127561 1148.6860454383436 0 0 0 0 0 0 0 0 0 G 0.28913 - 5 + NaN NaN 114392.5 NaN 16621 4077 20698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20702 84.6 NaN 1737200 35 0 281090 0.327 + 21517 PYISNIYLI 9 80 548.3081285878604 1094.6017042425208 2 548.3084106445312 MULTI HCD FTMS 0 0 0 20701 1397530.375 0.9455408232183243 1 -0.01911163330078125 1 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 99.79894945604345 0.0042691968066200965 2 [Y{I|L}]SPN{I|L}Y{I|L}{I|L} 9 2 + 101.1 0 0 9.236 9.236 89.754 0 0 0 10.791812460476251 16.478174818886373 10.791812460476251 1.7609125905568135 0 1.805462187404089 1.5228787452803376 0.6421590589602533 1.1549471895720984 [Y{I|L}]SPN{I|L}Y{I|L}{I|L};[Y{I|L}]PSN{I|L}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SN{I|L}Y{I|L}{I|L};[Y{I|L}]SPNY{I|L}{I|L}{I|L};[Y{I|L}]PSNY{I|L}{I|L}{I|L};[Y{I|L}]SPGG{I|L}Y{I|L}{I|L};[Y{I|L}]PSGG{I|L}Y{I|L}{I|L};[Y{I|L}]S{[QV]|[N{I|L}]|[RA]|[KV]}PY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SNY{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SGG{I|L}Y{I|L}{I|L} 9.236;9.0751;8.2501;7.6191;7.4583;7.3396;7.1788;6.6445;6.6332;6.3537 -;-;+;-;-;-;-;-;-;- + 1429 NaN NaN 340372.5 NaN 16622 4078 20701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20703 84.604 NaN 262300 35 0 51764 0.261 + -1 WLCLSDLL 8 59 531.270256467821 1060.525960002442 2 531.2706909179688 MULTI HCD FTMS 0 0 0 20701 231646.0625 0.10070509436671167 26 -0.5439376831054688 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))WLC(Carbamidomethyl (C))LSDLL_ REV__ENST00000505457.1_1_5:6749703-6750667:+|nuORF 13.50788311687929 0.4944073034352369 2 {I|L}{I|L} 2 -1 25.969 0 0 2.4487 0 0 816.3463009475369 0 816.3463009475369 0 10.484550065040281 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.4487 + + 59 NaN NaN 123656.8 NaN 16623 4078 20701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20704 84.608 NaN 208200 35 0 17399 0.261 + -1 LTCIERQAAD 10 77 588.787044000678 NaN 0 588.7875366210938 PEAK HCD FTMS 0 0 0 20701 44452.55859375 0.10325446805378563 19 -0.37441253662109375 3 Carbamidomethyl (C) _LTC(Carbamidomethyl (C))IERQAAD_ REV__ENST00000551178.5_2_17:3576991-3577108:-|nuORF 21.536976647645854 0.26818477760186155 2 DR[RP]A{I|L} 6 -1 10.15 0 0 0.86345 0 0 233.0748681753808 231.0780428522094 464.1529110275902 0 0 0 0 0 0 0 0 0 DR[RP]A{I|L} 0.86345 - 121 + NaN NaN 114869 NaN 16624 4078 20701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20705 84.611 NaN 219710 35 0 39633 0.261 -1 MPLSEDFVWM 10 46 635.7774041477584 1269.5402553623167 2 635.7785034179688 MULTI HCD FTMS 0 0 0 20701 86545.625 0.40350720502789333 9 -0.1440582275390625 4 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 36.12702656103203 0.1790159924230938 2 VW{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.8513 0 0 819.3455535372763 0 819.3455535372763 0 30.713337517843655 0 0 0 1 0 0 0 VW{M(Oxidation (M))|F} 2.8513 + + 27 NaN NaN 113496.9 NaN 16625 4078 20701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20706 84.614 NaN 235920 35 0 28417 0.261 + 21557 PYLWESLPL 9 71 559.2994872870087 1116.5844216408173 2 559.2997436523438 MULTI HCD FTMS 0 0 0 20701 115928.078125 0.3931055862512492 3 -0.05440521240234375 5 Unmodified _PYLWESLPL_ REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF 28.486842064014134 0.11819662193267319 2 PY{I|L}S[YK]AY{I|L} 9 -1 + 64.732 0 0 5.7973 5.7973 93.18 0 0 0 39.058167323414764 3.4485298644745654 3.4485298644745654 64.73226736994212 0 1.774227503252014 1.6989700043360187 0.28872548999643577 0 PY{I|L}S[YK]AY{I|L} 5.7973 - 289 + NaN NaN 127487.4 NaN 16626 4078 20701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20708 84.619 NaN 710620 35 0 203000 0.327 + -1 TIGCQGMA 8 51 419.1834643829054 836.3523758326108 2 419.18353271484375 MULTI HCD FTMS 0 0 0 20707 1308371.75 0.7419933178611002 1 -0.01599884033203125 1 Carbamidomethyl (C) _TIGC(Carbamidomethyl (C))QGMA_ REV__ENST00000558394.5_1_15:77348162-77363449:-|nuORF;REV__ENST00000560514.1_1_15:77348372-77363449:-|nuORF 2.577480529830294 0.5381683276125971 2 {I|L}[YC(Carbamidomethyl (C))] 3 -1 8.9524 0 0 1.0704 0 0 382.15721327949376 0 382.15721327949376 0 1.165827977365625 0 0 0 0 0 0 0 {I|L}[YC(Carbamidomethyl (C))] 1.0704 - 7 NaN NaN 200251.4 NaN 16627 4079 20707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20709 84.623 NaN 258120 35 0 13597 0.261 + -1 ICEQTTKLW 9 84 589.7957099364872 1177.5768669397744 2 589.7962646484375 MULTI HCD FTMS 0 0 0 20707 186317.078125 0.33287520847458685 18 -0.3553009033203125 2 Carbamidomethyl (C) _IC(Carbamidomethyl (C))EQTTKLW_ REV__ENST00000245932.10_1_19:46029480-46029618:+|nuORF 25.399314129420986 0.14091189997036632 2 {I|L}{M(Oxidation (M))|F}{I|L}T{I|L}W 6 -1 45.711 0 0 3.8818 0 0 386.1070926251244 0 386.1070926251244 0 21.75881917084361 0 0 0 1.774227503252014 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}T{I|L}W 3.8818 - 313 + NaN NaN 133617.3 NaN 16628 4079 20707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20710 84.627 NaN 578740 35 0 71928 0.261 + -1 LSFIKMLLF 9 94 564.329909401266 1126.645265869332 2 564.3310546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _LSFIKM(Oxidation (M))LLF_ REV__ENST00000445547.1_3_2:187373374-187373425:+|nuORF 19.256988751693697 0.19398022840297344 2 S{I|L}{M(Oxidation (M))|F} 3 -1 27.351 0 0 2.4277 0 0 761.4457874982437 0 761.4457874982437 0 10.467203307072733 0 0 0 0.805462187404089 0 0 0 S{I|L}{M(Oxidation (M))|F} 2.4277 - 206 NaN NaN 173187.7 NaN 16629 4079 20707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20711 84.63 NaN 367810 35 0 39648 0.261 + -1 LMNTTAVQLL 10 81 560.3066200989324 1118.5986872646647 2 560.3062744140625 MULTI HCD FTMS 0 0 0 20707 37429.36328125 0.036695501415780006 15 -0.2669677734375 4 Oxidation (M) _LM(Oxidation (M))NTTAVQLL_ REV__nc|ENSG00000077616|Q9Y3Q0-2|NAALAD2 24.020572477871973 0.2864316864133941 2 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}D 7 -1 31.814 0 0 2.8441 0 0 0 240.1854541926522 240.1854541926522 12.34977568466924 0 0 0 0 1 1.3010299956639813 0 0.75 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}D 2.8441 - 289 NaN NaN 158899.2 NaN 16630 4079 20707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20713 84.635 NaN 2602500 35 0 123730 0.327 -1 0 114 545.3169038290621 1088.619254724924 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20712 3414317.5 0.8275995760097945 -2 0.0351104736328125 1 NaN NaN 2 PYK{M(Oxidation (M))|F} 4 -1 11.419 0 0 1.0489 0 0 326.1945820265342 224.09761987857658 550.2922019051108 0 0 0 0 0 0.8494850021680094 0 0 0.2614393726401688 PYK{M(Oxidation (M))|F} 1.0489 - 378 + NaN NaN 433696.5 NaN 16631 4080 20712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20714 84.639 NaN 635690 35 0 42205 0.261 + 23644 RPVAELAEQV 10 109 556.3083321219077 NaN 0 556.3080444335938 PEAK HCD FTMS 0 0 0 20712 294823.28125 0.7326665540086128 3 -0.0416107177734375 2 Unmodified _RPVAELAEQV_ REV__ENSG00000241945|ENST00000291576|PWP2 13.042465956692817 0.3290217458104555 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E 3 -1 17.536 0 0 1.579 0 0 371.28266658580907 313.15131555728755 684.4339821430966 0 0 0 0 0 0 0 0.6109243748081782 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E 1.579 - 490 + NaN NaN 203832.8 NaN 16632 4080 20712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20715 84.643 NaN 398450 35 0 62495 0.261 + 6429 FPIDDVFVGM 10 77 578.2725242172125 1154.530495501225 2 578.2735595703125 MULTI HCD FTMS 0 0 0 20712 134366.296875 0.47471404354712526 -9 0.1182861328125 3 Oxidation (M) _FPIDDVFVGM(Oxidation (M))_ ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4 71.13359017698441 0.016242133362018647 2 E[TA]V{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 8 5 63.959 0 0 5.5398 0 0 286.14067275215 0 286.14067275215 0 58.24539712336197 0 0 0 2 0 0.6307196863200843 0 E[TA]V{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5.5398 - 305 NaN NaN 166302.7 NaN 16633 4080 20712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20716 84.646 NaN 259650 35 0 34932 0.261 + 13603 KYPENFFLL 9 55 585.8129910707257 1169.6114292082514 2 585.8128051757812 MULTI HCD FTMS 0 0 0 20712 144718.65625 0.48654636954854436 -2 0.0351104736328125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 31.26834338654808 0.10542797264966089 2 K{M(Oxidation (M))|F}{I|L}{I|L} 4 5 43.047 0 0 3.6805 0 0 650.262498924025 0 650.262498924025 0 26.84955642535897 0 0 0 0.9247425010840047 0 0 0.4247425010840047 K{M(Oxidation (M))|F}{I|L}{I|L} 3.6805 - 137 NaN NaN 132694.1 NaN 16634 4080 20712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20717 84.649 NaN 219580 35 0 43555 0.261 + 5460 FIPIIGGMWEL 11 45 638.3447486203391 1274.6749443074782 2 638.846435546875 MULTI HCD FTMS 0 0 0 20712 73684.0546875 0.8050986330353254 2 -0.02616119384765625 5 Unmodified _FIPIIGGMWEL_ REV__nc|ENSG00000211973|P01742|IGHV1-69;REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D 17.11289562659939 0.30797719109864646 2 E{I|L} 2 -1 25.969 0 0 2.0373 0 0 1014.5373448816712 0 1014.5373448816712 0 15.484550065040281 0 0 0 0.5 0 0 0 E{I|L} 2.0373 + + 47 NaN NaN 125548.2 NaN 16635 4080 20712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20719 84.654 NaN 122270 35 0 6819.6 0.326 + 14854 LKGARRDP 8 60 456.77217067976625 911.5297884263325 2 456.7721252441406 MULTI HCD FTMS 0 0 0 20718 192587.125 0.16561096235559936 -9 0.1195831298828125 1 Unmodified _LKGARRDP_ ENST00000317178.9_1_19:58258268-58258442:+|nuORF 2.302733041254933 0.5385759549224092 2 W 1 8 12.218 0 0 1.3404 0 0 707.4400952884404 0 707.4400952884404 0 5.228787452803374 0 0 0 0 0 0 0 W 1.3404 - 15 + NaN NaN 103265.9 NaN 16636 4081 20718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20721 84.661 NaN 1487600 35 0 160760 0.327 -1 0 88 582.8052619854803 1163.5959710377606 2 582.8055419921875 MULTI HCD FTMS 0 0 0 20720 1016210.6875 0.24378417758490195 16 -0.33588409423828125 1 NaN NaN 2 {I|L}T{I|L}VN{[QS]|[NT]}W 8 -1 72.784 0 0 6.2551 0 0 204.08805602861963 0 204.08805602861963 0 47.57419009764701 0 0 0 2.138210492164445 0 1.1549471895720984 1.610924374808178 {I|L}T{I|L}VN{[QS]|[NT]}W 6.2551 - 1333 + NaN NaN 318163.2 NaN 16637 4082 20720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20722 84.665 NaN 1015700 35 0 143900 0.261 + 22775 QYILFPLRF 9 82 598.8450364420323 1195.6755199508646 2 598.8450317382812 MULTI HCD FTMS 0 0 0 20720 498026.78125 0.04980663775270134 38 -0.8508224487304688 2 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 99.79894945604345 0.0042691968066200965 2 [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F} 9 0 + 69.091 0 0 5.7784 5.7784 86.297 0 0 0 6.561734207603749 7.771003568148629 6.561734207603749 6.561734207603749 0 2.5138793319624577 1.3010299956639813 0 1.9604093769761874 + + [YQ]{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}PR{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}Y[{I|L}V]R{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{I|L}S{I|L}{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}SW;[Y{I|L}]{I|L}Q{M(Oxidation (M))|F}P{I|L}R{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}VR{I|L}{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}T{I|L}{M(Oxidation (M))|F}[VP]R{M(Oxidation (M))|F} 5.7784;5.2296;4.6631;4.3013;4.0037;3.9943;3.8232;3.4705;3.4386;3.2237 +;-;-;-;-;-;-;-;-;- + 2397 NaN NaN 243083.8 NaN 16638 4082 20720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20723 84.668 NaN 775220 35 0 132850 0.261 + 22669 QWPELLLRF 9 66 601.339725526334 1200.6648981194678 2 601.3402099609375 MULTI HCD FTMS 0 0 0 20720 401295.46875 1 0 0 3 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 38.175570920033316 0.07371992880350783 2 [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 9 0 + 49.051 0 0 4.0853 4.0853 89.732 0 0 0 28.47804375441612 9.137342758552691 9.137342758552691 35.61874108507752 0 0.6989700043360187 1.2218487496163564 0 0 + + [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F};[EP]{I|L}{I|L}[R{I|L}][WQ]{M(Oxidation (M))|F} 4.0853;1.1188 +;- + 177 + NaN NaN 210081.1 NaN 16639 4082 20720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20724 84.672 NaN 237520 35 0 40060 0.262 + 26548 SVMLELVAL 9 42 495.7805526639806 989.5465523947612 2 495.7808837890625 MULTI HCD FTMS 0 0 0 20720 410279.125 0.5468904892881139 16 -0.33588409423828125 4 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 57.47134341890925 0.0211188941628804 2 E{I|L}VA{I|L} 5 4 66.128 0 0 6.6826 0 0 446.21910292793126 0 446.21910292793126 0 59.13811573052314 0 0 0 1.8252574989159953 0 1.2302046884880937 0 + E{I|L}VA{I|L} 6.6826 + + 88 NaN NaN 143968 NaN 16640 4082 20720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20726 84.677 NaN 414890 35 0 187820 0.327 + 19495 NQPRRARLI 9 58 562.3440692743559 1122.6735856155117 2 562.3444213867188 MULTI HCD FTMS 0 0 0 20725 137693.671875 0.25307362113509974 1 -0.01930999755859375 1 Unmodified _NQPRRARLI_ REV__ENSG00000149091|ENST00000456247|DGKZ;REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF;REV__ENST00000531879.5_1_11:46367016-46400221:+|nuORF;REV__nc|ENSG00000149091|Q13574-1|DGKZ;REV__nc|ENSG00000149091|Q13574-3|DGKZ;REV__nc|ENSG00000149091|Q13574-4|DGKZ;REV__nc|ENSG00000149091|Q13574-5|DGKZ;REV__nc|ENSG00000149091|Q13574-6|DGKZ;REV__nc|ENSG00000149091|Q13574-7|DGKZ 2.0597508629832335 0.3354026079994024 2 {I|L}Q[EC]{M(Oxidation (M))|F}Q{I|L}{I|L} 8 -1 27.396 0 0 2.4402 0 0 130.17256130086167 0 130.17256130086167 0 21.91122510072759 0 0 0 0 0 0 0.3494850021680094 {I|L}Q[EC]{M(Oxidation (M))|F}Q{I|L}{I|L} 2.4402 - 126 + NaN NaN 149028.9 NaN 16641 4083 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20727 84.681 NaN 449250 35 0 127470 0.261 + 25915 SNWTSNFII 9 44 541.2695619486816 1080.524570964163 2 541.2700805664062 MULTI HCD FTMS 0 0 0 20725 260261.671875 0.6228058538432644 1 -0.01930999755859375 2 Unmodified _SNWTSNFII_ ENSG00000181856|ENST00000317370|SLC2A4;ENST00000572485.5_1_17:7188262-7189945:+|nuORF 32.30548876998284 0.10066689432505688 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.35 0 0 689.2763646086914 0 689.2763646086914 0 30.255762612236907 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.35 + + 27 NaN NaN 159160.3 NaN 16642 4083 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20728 84.684 NaN 505680 35 0 93386 0.261 + 11641 IYVIGLQEL 9 77 524.3072180696012 1046.5998832060022 2 524.3070678710938 MULTI HCD FTMS 0 0 0 20725 182391.21875 0.8790841829751326 -4 0.05760955810546875 3 Unmodified _IYVIGLQEL_ ENSG00000132376|ENST00000421807|INPP5K 56.17704186161178 0.022929533404884107 2 [Y{I|L}]V{I|L}{[VA]|[{I|L}G]}QE{I|L} 9 0 + 51.348 0 0 4.9062 4.9062 86.777 0 0 0 5.6424927368725974 43.90092514408778 5.6424927368725974 9.208187539523749 0 1.8494850021680094 0 0 0 + + [Y{I|L}]V{I|L}{[VA]|[{I|L}G]}QE{I|L};[Y{I|L}]V{I|L}{[VA]|[{I|L}G]}[AG]E{I|L};{[QN]|[E{I|L}]|[KN]}K{[MG]|[TS]}{I|L}M{I|L}{I|L} 4.9062;4.0264;1.6654 +;-;- + 420 NaN NaN 166375.8 NaN 16643 4083 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20729 84.688 NaN 600810 35 0 63323 0.261 + 25685 SIHVLRGSLF 10 105 564.8316907365769 NaN 0 564.8214111328125 PEAK HCD FTMS 0 0 0 20725 58808.08984375 0.5514039623338238 5 -0.07675933837890625 4 Unmodified _SIHVLRGSLF_ REV__ENSG00000049246|ENST00000377532|PER3;REV__nc|ENSG00000049246|P56645|PER3 7.289230182591677 0.3339457182549222 2 E 1 -1 4.1639 0 0 0.36925 0 0 237.17812611636435 758.4228609674436 995.6009870838079 0 0 0 0 0 0 0 0.3054621874040891 0 E 0.36925 - 97 + NaN NaN 182801.3 NaN 16644 4083 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20730 84.691 NaN 118550 35 0 18551 0.261 + 4174 ETRNQQLI 8 54 501.2712548960225 NaN 0 500.791015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ETRNQQLI_ REV__ENST00000545177.4_1_6:2855402-2855693:-|nuORF 10.073929032068715 0.38822285293237185 2 {I|L}V 2 -1 10.969 0 0 1.0963 0 0 132.05519905040825 653.3010347955686 785.3562338459769 0 0 0 0 0 0 0 0 0 {I|L}V 1.0963 - 10 + NaN NaN 114190.2 NaN 16645 4083 20725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20732 84.696 NaN 1017700 35 0 33835 0.327 -1 0 119 567.3307994004714 1132.6470458677427 2 567.3309326171875 MULTI HCD FTMS 0 0 0 20731 1045892.1875 0.5692443753769898 9 -0.1642608642578125 1 NaN NaN 2 [{M(Oxidation (M))|F}V]Q[PA]N[{I|L}V]V{M(Oxidation (M))|F} 10 -1 [{M(Oxidation (M))|F}V]Q[PA]N[{I|L}V]V + + 12.764 -19.064 -1.9703 1.1269 1.1269 59.679 0 0 0 0 -3.5378657381245446 -3.5378657381245446 0 0 0 0 0 0 [{M(Oxidation (M))|F}V]Q[PA]N[{I|L}V]V{M(Oxidation (M))|F} 1.1269 - 529 + NaN NaN 257269.3 NaN 16646 4084 20731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20733 84.7 NaN 628320 35 0 21633 0.261 + 21126 PPFLKIWLH 9 104 575.8419496470875 1149.669346360975 2 576.34423828125 MULTI HCD FTMS 0 0 0 20731 363894 0.7995074675962001 14 -0.30112457275390625 2 Unmodified _PPFLKIWLH_ REV__ENSG00000091181|ENST00000446632|IL5RA;REV__nc|ENSG00000091181|Q01344-5|IL5RA 4.75600775471527 0.31496297302216103 2 D 1 -1 10.797 0 0 0.93913 0 0 61.0509281304274 970.5430972420775 1031.5940253725048 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.93913 - 178 + NaN NaN 181158.5 NaN 16647 4084 20731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20734 84.704 NaN 194110 35 0 38505 0.261 + -1 IFGPLVSNCRI 11 50 638.3447486203391 1274.6749443074782 2 638.3443603515625 MULTI HCD FTMS 0 0 0 20731 79478.0078125 0.4375969606125162 2 -0.03203582763671875 3 Carbamidomethyl (C) _IFGPLVSNC(Carbamidomethyl (C))RI_ REV__ENSG00000204228|ENST00000374662|HSD17B8 7.101721422024254 0.3877749288398915 2 E{I|L} 2 -1 20.969 0 0 1.6451 0 0 1014.5346309533704 0 1014.5346309533704 0 15.880456295278407 0 0 0 0 0 0 0 E{I|L} 1.6451 - 9 NaN NaN 115445.3 NaN 16648 4084 20731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20735 84.707 NaN 92064 35 0 11761 0.264 + 4970 FATLVDVVV 9 34 481.7815246582031 NaN 0 481.7815246582031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FATLVDVVV_ ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 21.74664581756881 0.17567436591797916 2 V 1 8 11.237 0 0 1.1686 0 0 117.07939085040432 742.3786141918837 859.458005042288 0 0 0 0 0 0.4247425010840047 0 0 0 + V 1.1686 + + 1 + NaN NaN 111002.8 NaN 16649 4084 20731 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20737 84.712 NaN 1577500 35 0 67821 0.327 -1 0 126 553.8300991066263 1105.6456452800526 2 553.830322265625 MULTI HCD FTMS 0 0 0 20736 1563183.75 0.6955437262255905 3 -0.04141998291015625 1 NaN NaN 2 D 1 -1 10.264 0 0 0.92835 0 0 61.053176574838126 926.5184735085143 987.5716500833524 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.92835 - 418 + NaN NaN 325851.8 NaN 16650 4085 20736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20738 84.716 NaN 477570 35 0 37818 0.261 + 32812 WTINNFSF 8 67 514.7452985444357 1027.4760441556714 2 515.2470703125 MULTI HCD FTMS 0 0 0 20736 147045.921875 0.48598825482040886 1 -0.0160064697265625 2 Unmodified _WTINNFSF_ ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL;ENST00000513080.5_1_17:47699309-47700178:-|nuORF 107.99703571036002 0.036978982887966305 2 S{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7 5 61.841 0 0 6.0187 0 0 165.0789764314522 0 165.0789764314522 0 38.653113369619305 0 0 0 0 0 1.5356668758921828 1.1747425010840047 S{M(Oxidation (M))|F}[QT]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 6.0187 - 199 + NaN NaN 171336.7 NaN 16651 4085 20736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20739 84.72 NaN 141360 35 0 35862 0.261 + 9958 IEFGVDEVI 9 38 510.7660878671284 1019.5176228010569 2 510.7665100097656 MULTI HCD FTMS 0 0 0 20736 78479.203125 0.5264030041429588 3 -0.04141998291015625 3 Unmodified _IEFGVDEVI_ ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-2|USP10;nc|ENSG00000103194|Q14694-3|USP10 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 25.969 0 0 2.5472 0 0 789.3533099455587 0 789.3533099455587 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{I|L} 2.5472 + + 7 NaN NaN 117240 NaN 16652 4085 20736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20740 84.723 NaN 134550 35 0 5050.6 0.261 + 10915 IYAALQRMLV 10 64 589.3429451047962 1176.6713372763923 2 589.3433837890625 MULTI HCD FTMS 0 0 0 20736 94677.9453125 0.8926583448075814 4 -0.07059478759765625 4 Unmodified _IYAALQRMLV_ ENSG00000165449|ENST00000395348|SLC16A9 4.3292370932331545 0.45238836448149167 2 YY{M(Oxidation (M))|F}[WC(Carbamidomethyl (C))]{I|L}P 7 8 19.454 0 0 1.6533 0 0 0 144.20355570746065 144.20355570746065 11.979619346030645 0 0 0 0 0 1.6989700043360187 0 0 YY{M(Oxidation (M))|F}[WC(Carbamidomethyl (C))]{I|L}P 1.6533 - 34 NaN NaN 109293.6 NaN 16653 4085 20736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20742 84.728 NaN 920860 35 0 80307 0.327 + 3604 EKLHRAAA 8 100 448.2589036888358 894.5032544444716 2 448.2590026855469 MULTI HCD FTMS 0 0 0 20741 687113.0625 0.5717209745156955 -5 0.07366180419921875 1 Unmodified _EKLHRAAA_ ENST00000453185.5_1_1:29522511-29533334:-|nuORF;ENST00000475773.5_1_1:29520536-29527072:-|nuORF 8.593279151180031 0.5292430274356741 2 Q[{M(Oxidation (M))|F}V] 3 8 9.437 0 0 1.055 0 0 502.29939467597814 0 502.29939467597814 0 0.6690156004425774 0 0 0 0.5 0 0 0 Q[{M(Oxidation (M))|F}V] 1.055 - 48 NaN NaN 221131.1 NaN 16654 4086 20741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20743 84.732 NaN 964020 35 0 291640 0.261 + 35696 YYLDAVVSF 9 68 538.7686946212407 1075.5228363092813 2 538.7689208984375 MULTI HCD FTMS 0 0 0 20741 383131.375 0.5952706003655658 4 -0.0706329345703125 2 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 85.27202061508552 0.004649858145912257 2 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 9 5 + 81.722 0 0 7.5983 7.5983 96.591 0 0 0 12.208610898055795 53.605676863892796 12.208610898055795 81.72196741330231 0 1.9247425010840047 1.5228787452803376 1.1382104921644451 0 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 7.5983 - 168 NaN NaN 231429.8 NaN 16655 4086 20741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20744 84.736 NaN 733500 35 0 100420 0.261 + 21518 PYISNIYLI 9 75 548.3081285878604 1094.6017042425208 2 548.3082885742188 MULTI HCD FTMS 0 0 0 20741 360012.90625 0.24357746052199147 9 -0.18084716796875 3 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 61.357469665136826 0.01568246967499496 2 [Y{I|L}]S[NP]{I|L}Y{I|L}{I|L} 9 2 + 78.751 0 0 7.1945 7.1945 88.273 0 0 0 13.807196863200843 16.478174818886373 13.807196863200843 5.568109453757657 0 1.3494850021680094 1.5228787452803376 0.3807196863200844 1.0356668758921828 [Y{I|L}]S[NP]{I|L}Y{I|L}{I|L};[Y{I|L}]P[NS]{I|L}Y{I|L}{I|L};[Y{I|L}]PE[KG]Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]{I|L}Y{I|L}{I|L};[Y{I|L}]S[NP]Y{I|L}{I|L}{I|L};[Y{I|L}]STV{[WT]|[RM]}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E[KG]Y{I|L}{I|L};[Y{I|L}]P[NS]Y{I|L}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[NS]Y{I|L}{I|L}{I|L};[Y{I|L}]ST{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}{I|L} 7.1945;6.6858;6.0228;5.9331;5.5934;5.3195;5.2701;5.0847;4.332;4.3035 -;-;-;+;-;-;-;-;-;- + 867 NaN NaN 205378.2 NaN 16656 4086 20741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20745 84.739 NaN 166020 35 0 18162 0.261 + -1 QVYLMVFF 8 57 531.7716672453205 NaN 0 531.77099609375 PEAK HCD FTMS 0 0 0 20741 23101.494140625 0.15314637491047878 9 -0.18084716796875 4 Oxidation (M) _QVYLM(Oxidation (M))VFF_ REV__tr|U7T138|U7T138_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00885PE=4SV=1 10.183394434864962 0.38822285293237185 2 D 1 -1 11.114 0 0 1.047 0 0 390.1998153482596 553.2632540338499 943.4630693821096 0 0 0 0 0 0.7134679910804405 0 0 0 D 1.047 - 43 + NaN NaN 118337.9 NaN 16657 4086 20741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20747 84.744 NaN 216990 35 0 55266 0.327 + -1 LCKCGASG 8 47 419.1834643829054 836.3523758326108 2 419.1834716796875 MULTI HCD FTMS 0 0 0 20746 316871.53125 0.1797016473398442 9 -0.20428466796875 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))KCGASG_ REV__ENST00000547035.5_1_12:53887565-53887598:-|nuORF 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 5.4846 0 0 0.65577 0 0 59.03470112733584 661.2083593612646 720.2430604886005 0 0 0 0 0 0 0 0 0 {I|L} 0.65577 + + 1 + NaN NaN 140829.2 NaN 16658 4087 20746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20748 84.748 NaN 122590 35 0 8288.5 0.261 + 26402 SSVAPVASLS 10 48 459.2497976291046 916.4850423250092 2 459.2500305175781 MULTI HCD FTMS 0 0 0 20746 50347.87109375 0.4465902637570454 -2 0.0319976806640625 2 Unmodified _SSVAPVASLS_ sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1 3.5964929083625545 0.45626689593999237 2 Y 1 10 7.7423 0 0 0.84478 0 0 577.3124176685624 173.08168970279533 750.3941073713577 0 0 0 0 0 0.4247425010840047 0 0 0 Y 0.84478 - 25 + NaN NaN 110166.8 NaN 16659 4087 20746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20750 84.753 NaN 2283100 35 0 106910 0.327 -1 0 109 545.3169038290621 1088.619254724924 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20749 2705116.75 0.6556957504265474 6 -0.132598876953125 1 NaN NaN 2 {M(Oxidation (M))|F}KYYKN 6 -1 15.729 0 0 1.4448 0 0 227.12043959785314 0 227.12043959785314 0 5.996615780217677 0 0 0 0.4247425010840047 0 0 0.3054621874040891 {M(Oxidation (M))|F}KYYKN 1.4448 - 286 NaN NaN 399281 NaN 16660 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20751 84.758 NaN 691390 35 0 26203 0.261 + 12184 KKMAQVLHVP 10 116 575.8419496470875 1149.669346360975 2 575.8417358398438 MULTI HCD FTMS 0 0 0 20749 276853.9375 0.26294450202358016 22 -0.5503921508789062 2 Unmodified _KKMAQVLHVP_ ENST00000590400.1_1_19:11303345-11305238:-|nuORF 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F} 1 9 12.474 0 0 1.085 0 0 984.5907158451531 0 984.5907158451531 0 2.4079933802306286 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.085 + + 210 + NaN NaN 197994.8 NaN 16661 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20752 84.761 NaN 646220 35 0 191830 0.261 + 28411 TPFLYDLVM 9 80 557.7778956018665 1113.5412382705329 2 557.7782592773438 MULTI HCD FTMS 0 0 0 20749 308532.75 0.35973332423893434 -5 0.07675933837890625 3 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 81.61307344734483 0.005330412723537057 2 {I|L}YD{I|L}V{M(Oxidation (M))|F} 6 3 70.394 0 0 6.3216 0 0 345.16868788886876 0 345.16868788886876 0 57.29486901908295 0 0 0 2.4247425010840047 0 0.8494850021680094 0 + {I|L}YD{I|L}V{M(Oxidation (M))|F} 6.3216 + + 464 NaN NaN 181675.2 NaN 16662 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20753 84.764 NaN 745940 35 0 107250 0.261 + 22816 QYLLVTALY 9 69 542.3078678069326 1082.601182680665 2 542.3079833984375 MULTI HCD FTMS 0 0 0 20749 252515.546875 0.31041453077739606 -5 0.07675933837890625 4 Unmodified _QYLLVTALY_ ENSG00000165389|ENST00000298130|SPTSSA 71.92227651296345 0.008466197542043549 2 C(Carbamidomethyl (C)){I|L}VTA{I|L}Y 7 3 73.665 0 0 6.8044 0 0 244.17822463203282 0 244.17822463203282 0 59.85222622033724 0 0 0 2.5 0 1.1989700043360187 0 C(Carbamidomethyl (C)){I|L}VTA{I|L}Y 6.8044 - 316 NaN NaN 211109.5 NaN 16663 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20754 84.768 NaN 191300 35 0 67488 0.261 + 30135 VGGAVKSRR 9 45 465.2855475539675 928.556542174735 2 465.2862243652344 MULTI HCD FTMS 0 0 0 20749 73720.203125 0.39714634343845184 -4 0.0574493408203125 5 Unmodified _VGGAVKSRR_ REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF 2.302733041254933 0.33356062215410776 2 {[{M(Oxidation (M))|F}H]|[RQ]}V 3 -1 5.9421 0 0 0.63993 0 0 0 542.3098130089725 542.3098130089725 2.8431811792050627 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}V 0.63993 - 11 NaN NaN 124327.2 NaN 16664 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20755 84.771 NaN 213110 35 0 27411 0.261 + 21594 PYNDYFEYF 9 47 629.258756635961 1256.502960338722 2 629.26025390625 MULTI HCD FTMS 0 0 0 20749 16149.7041015625 0.13071307940731106 10 -0.24367523193359375 6 Unmodified _PYNDYFEYF_ ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2 20.41453444215458 0.18397929046831515 2 {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 4 5 42.607 0 0 3.3909 0 0 652.2517287245861 0 652.2517287245861 0 38.00312209084183 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}EY{M(Oxidation (M))|F} 3.3909 + + 20 NaN NaN 123823.9 NaN 16665 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20756 84.774 NaN 209240 35 0 35147 0.261 -1 MPLSEDFVWM 10 51 635.7774041477584 1269.5402553623167 2 635.7781372070312 MULTI HCD FTMS 0 0 0 20749 15877.6474609375 0.07402737168263697 19 -0.48209381103515625 7 Oxidation (M) _MPLSEDFVWM(Oxidation (M))_ ENSG00000092036|ENST00000541587|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4 20.453626601364224 0.3197956946484955 2 VW{M(Oxidation (M))|F} 3 -1 36.198 0 0 2.8513 0 0 819.3464222638687 0 819.3464222638687 0 28.239087409443187 0 0 0 1 0 0 0 VW{M(Oxidation (M))|F} 2.8513 + + 24 NaN NaN 118435.1 NaN 16666 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20757 84.778 NaN 165950 35 0 17385 0.261 + 11027 IYERLFCWI 9 61 621.8183248810186 1241.6220968288371 2 621.8372802734375 MULTI HCD FTMS 0 0 0 20749 19731.994140625 0.4218996075158641 -4 0.0574493408203125 8 Unmodified _IYERLFCWI_ ENSG00000176658|ENST00000318217|MYO1D 17.11289562659939 0.2125047172822487 2 [Y{I|L}]N[RK]{M(Oxidation (M))|F}CW{I|L} 9 2 + 42.858 0 0 3.4518 3.4518 85.071 0 0 0 16.399699876253777 22.05645316481359 16.399699876253777 9.208187539523749 0 0.3807196863200844 1.6989700043360187 0 0 [Y{I|L}]N[RK]{M(Oxidation (M))|F}CW{I|L};[Y{I|L}]GG[RK]{M(Oxidation (M))|F}CW{I|L};[Y{I|L}]N[RK]{M(Oxidation (M))|F}C{[DA]|[EG]}{I|L};[Y{I|L}]N[RK]{M(Oxidation (M))|F}[SG]EE;[Y{I|L}]N[RK][YK]EE;[Y{I|L}]N[RK][YQ]EE 3.4518;2.7102;2.7102;1.5201;1.2365;1.2365 -;-;-;-;-;- 67 NaN NaN 127395.2 NaN 16667 4088 20749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20759 84.783 NaN 402010 35 0 73028 0.327 + 6430 FPIDDVFVGM 10 70 578.2725242172125 1154.530495501225 2 578.2724609375 MULTI HCD FTMS 0 0 0 20758 283046.8125 1 0 0 1 Oxidation (M) _FPIDDVFVGM(Oxidation (M))_ ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4 68.08070601005525 0.01985953044443068 2 DV{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 6 4 66.247 0 0 5.738 0 0 472.23204238105626 0 472.23204238105626 0 56.409328277719766 0 0 0 2 0 0.6861818737241735 0 + DV{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5.738 + + 114 NaN NaN 154620.1 NaN 16668 4089 20758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20760 84.787 NaN 112630 35 0 12731 0.261 + 22661 QWPEGLKFLF 10 54 632.8396308169985 1263.6647087007968 2 632.83837890625 MULTI HCD FTMS 0 0 0 20758 17364.4375 0.18747657226067943 -8 0.1282501220703125 2 Unmodified _QWPEGLKFLF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 16.149105407346934 0.3600587335443843 2 M 1 10 9.2917 0 0 0.7353 0 0 183.09235106101102 946.507468980903 1129.599820041914 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.7353 - 17 + NaN NaN 107034.7 NaN 16669 4089 20758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20761 84.79 NaN 114330 35 0 17973 0.263 + 31177 VVEPYNPML 9 45 531.270256467821 1060.525960002442 2 531.270751953125 MULTI HCD FTMS 0 0 0 20758 58087.5390625 0.025252797477699897 37 -0.89984130859375 3 Unmodified _VVEPYNPML_ ENST00000405796.1_1_6:90011978-90012113:+|nuORF 6.723162845929126 0.3000504726104499 2 {I|L}{I|L} 2 8 20.969 0 0 1.9772 0 0 816.3485913151633 0 816.3485913151633 0 9.771212547196626 0 0 0 0 0 0 0 {I|L}{I|L} 1.9772 - 43 NaN NaN 102033.5 NaN 16670 4089 20758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20762 84.794 NaN 68735 35 0 16985 0.261 + 32459 WEAEGRGT 8 33 453.20948929292075 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 20758 16437.958984375 0.4514980400403633 -2 0.03859710693359375 4 Unmodified _WEAEGRGT_ ENST00000481145.1_1_1:89726389-89728307:-|nuORF 0.7936320650641473 0.38822285293237185 2 Y{M(Oxidation (M))|F}H 3 8 7.9318 0 0 0.87702 0 0 307.1453446973665 147.0517977350219 454.19714243238843 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}H 0.87702 - 6 + NaN NaN 99878.4 NaN 16671 4089 20758 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20764 84.799 NaN 966090 35 0 53633 0.327 + 20444 PALAQRTR 8 100 456.77217067976625 911.5297884263325 2 456.77227783203125 MULTI HCD FTMS 0 0 0 20763 1162888.75 1 0 0 1 Unmodified _PALAQRTR_ ENST00000476284.1_1_22:50964673-50968379:-|nuORF 18.13498045792455 0.4603629008820478 2 ATK 3 6 10.935 0 0 1.1996 0 0 281.18377098482534 327.14463220767817 608.3284031925035 0 0 0 0 0 0.25 0 0.7302046884880937 0.3252574989159953 ATK 1.1996 - 64 + NaN NaN 246849.2 NaN 16672 4090 20763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20765 84.803 NaN 676230 35 0 82548 0.261 + 22776 QYILFPLRF 9 77 598.8450364420323 1195.6755199508646 2 599.3472900390625 MULTI HCD FTMS 0 0 0 20763 217950.375 0.030159755096844543 46 -1.1452560424804688 2 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 65.23502041540118 0.010630085227462206 2 [Y{I|L}]AA{I|L}{M(Oxidation (M))|F}{I|L}{I|L}SW 10 6 [Y{I|L}]AA{I|L} + + 49.952 5.6864 1.0702 4.1778 4.1778 61.158 0 0 0 0 39.66190326687972 0 0 0 2 0 1.6307196863200843 0 [Y{I|L}]AA{I|L}{M(Oxidation (M))|F}{I|L}{I|L}SW 4.1778 - 827 + NaN NaN 199420 NaN 16673 4090 20763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20766 84.807 NaN 500680 35 0 45605 0.261 + -1 PFWKKCIW 8 69 582.8052619854803 1163.5959710377606 2 582.80615234375 MULTI HCD FTMS 0 0 0 20763 225736.53125 0.054153135071854645 24 -0.5897445678710938 3 Carbamidomethyl (C) _PFWKKC(Carbamidomethyl (C))IW_ REV__ENSG00000185432|ENST00000332160|METTL7A 19.438996006549623 0.45076845602799126 2 {I|L}T{I|L}W 4 -1 56.186 0 0 4.8286 0 0 632.2915863501429 0 632.2915863501429 0 36.31559999683283 0 0 0 2 0 0.4247425010840047 0 {I|L}T{I|L}W 4.8286 - 254 NaN NaN 162552.3 NaN 16674 4090 20763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20767 84.81 NaN 296230 35 0 52923 0.261 + 22670 QWPELLLRF 9 52 601.339725526334 1200.6648981194678 2 601.33984375 MULTI HCD FTMS 0 0 0 20763 327914.375 0.8171394908131516 8 -0.198455810546875 4 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 38.175570920033316 0.07371992880350783 2 [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 9 0 + 45.842 0 0 3.818 3.818 89.81 0 0 0 25.893259097864743 8.256886463274284 8.256886463274284 45.84175931466568 0 0.7302046884880937 1.2218487496163564 0 0 + + [WQ]PE{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 3.818 + + 81 + NaN NaN 126311.4 NaN 16675 4090 20763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20768 84.813 NaN 194240 35 0 28671 0.262 + 26549 SVMLELVAL 9 42 495.7805526639806 989.5465523947612 2 495.7806091308594 MULTI HCD FTMS 0 0 0 20763 190253.625 0.25360271026484066 24 -0.5897445678710938 5 Oxidation (M) _SVM(Oxidation (M))LELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 64.23631603340823 0.01165516075559909 2 E{I|L}VA{I|L} 5 4 63.861 0 0 6.4536 0 0 446.22126967597814 0 446.22126967597814 0 54.90865556844456 0 0 0 1.8807196863200843 0 1.2302046884880937 0 + E{I|L}VA{I|L} 6.4536 + + 91 NaN NaN 118004.5 NaN 16676 4090 20763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20770 84.818 NaN 583650 35 0 40147 0.327 + 16739 LYARLFDFL 9 86 579.3204122260463 1156.6262715188925 2 579.3206176757812 MULTI HCD FTMS 0 0 0 20769 198496.53125 0.42179856137083743 1 -0.032684326171875 1 Unmodified _LYARLFDFL_ ENSG00000142347|ENST00000644032|MYO1F;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000595191.1_1_19:8614980-8615536:-|nuORF;ENST00000600825.1_1_19:8612859-8615196:-|nuORF 72.96794272382148 0.008127836904478181 2 [Y{I|L}]AR{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 9 0 + 74.082 0 0 6.405 6.405 90.612 0 0 0 17.79840696594043 16.478174818886373 16.478174818886373 11.945830421822663 0 2.524227503252014 1.5228787452803376 0 0 + + [Y{I|L}]AR{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};[Y{I|L}]AR{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};[Y{I|L}]AR{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SR{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};[Y{I|L}]AR{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SR{M(Oxidation (M))|F}{I|L}D{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}R{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F}{I|L} 6.405;5.3722;4.8662;4.6796;4.6059;4.07;3.8348;3.8333;3.5731;3.1408 +;-;-;-;-;-;-;-;-;- + 1999 NaN NaN 176632.9 NaN 16677 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20771 84.822 NaN 408000 35 0 183720 0.261 + 21278 PRRAGRGLLQ 10 65 562.3440692743559 1122.6735856155117 2 562.3444213867188 MULTI HCD FTMS 0 0 0 20769 134564.140625 0.24732170969931538 9 -0.23456573486328125 2 Unmodified _PRRAGRGLLQ_ ENST00000370544.9_1_1:87794601-87794751:+|nuORF 1.6526216038709556 0.46655611578153744 2 Y 1 10 6.9897 0 0 0.62259 0 0 132.18279697276893 824.404080296068 956.5868772688368 0 0 0 0 0 0 0 0 0 Y 0.62259 - 51 + NaN NaN 156859.3 NaN 16678 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20772 84.826 NaN 274650 35 0 59480 0.261 + 22671 QWPELLLRF 9 56 601.339725526334 1200.6648981194678 2 601.3397216796875 MULTI HCD FTMS 0 0 0 20769 139756.84375 0.3482641959186089 9 -0.23456573486328125 3 Unmodified _QWPELLLRF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 34.40172386719151 0.0910440009062557 2 [WQ][EP]{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 9 0 + 35.313 0 0 2.9411 2.9411 88.718 0 0 0 11.601512169623625 9.889917747712651 9.889917747712651 35.31288733222433 0 0.7742275032520141 1.2218487496163564 0 0 + + [WQ][EP]{I|L}{I|L}{I|L}R{M(Oxidation (M))|F} 2.9411 + + 74 + NaN NaN 129464.8 NaN 16679 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20773 84.829 NaN 267590 35 0 30710 0.261 + 13604 KYPENFFLL 9 60 585.8129910707257 1169.6114292082514 2 585.813232421875 MULTI HCD FTMS 0 0 0 20769 167154.046875 0.5619745012134775 9 -0.23456573486328125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 28.494509381512117 0.11816142465008336 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 42.053 0 0 3.5954 0 0 631.2963734357437 0 631.2963734357437 0 25.854706403678875 0 0 0 1.25 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.5954 + + 100 NaN NaN 126266.2 NaN 16680 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20774 84.833 NaN 342210 35 0 42035 0.261 + 10788 ISPLAQAVRSS 11 82 564.8215445024214 NaN 0 564.8214111328125 PEAK HCD FTMS 0 0 0 20769 76285.6796875 0.39419610222279133 1 -0.032684326171875 5 Unmodified _ISPLAQAVRSS_ ENSG00000232810|ENST00000449264|TNF 5.296884461304476 0.3270944076746277 2 WGT 3 11 9.6927 0 0 0.85957 0 0 281.18891312418015 499.24741541080317 780.4363285349833 0 0 0 0 0 0 0 0 0 WGT 0.85957 - 53 + NaN NaN 133649.6 NaN 16681 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20775 84.836 NaN 261730 35 0 47119 0.261 + 11642 IYVIGLQEL 9 68 524.3072180696012 1046.5998832060022 2 524.307861328125 MULTI HCD FTMS 0 0 0 20769 67189.203125 0.32383667447745945 4 -0.09079742431640625 6 Unmodified _IYVIGLQEL_ ENSG00000132376|ENST00000421807|INPP5K 43.85829265575387 0.04763305254408404 2 [Y{I|L}]V{I|L}{[VA]|[{I|L}G]}Q{[QN]|[E{I|L}]|[KN]} 9 0 + 41.628 0 0 3.9775 3.9775 85.572 0 0 0 3.748162098248997 36.14393726401687 3.748162098248997 9.208187539523749 0 1.8494850021680094 0 0 0 + + [Y{I|L}]V{I|L}{[VA]|[{I|L}G]}Q{[QN]|[E{I|L}]|[KN]};[Y{I|L}]V{I|L}{[VA]|[{I|L}G]}[AG]{[QN]|[E{I|L}]|[KN]} 3.9775;3.0977 +;- + 113 NaN NaN 130130.2 NaN 16682 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20776 84.839 NaN 108300 35 0 7151 0.261 + 23594 RPEPYSST 8 62 468.72338897370685 NaN 0 468.7234191894531 PEAK HCD FTMS 0 0 0 20769 11681.2412109375 0.13310722136596848 1 -0.032684326171875 7 Unmodified _RPEPYSST_ ENST00000483039.5_1_17:7461620-7463377:+|nuORF 4.3292370932331545 0.38822285293237185 2 Q 1 8 8.9794 0 0 0.95992 0 0 396.2853266761262 408.0701082818969 804.3554349580231 0 0 0 0 0 0.3494850021680094 0 0 0 Q 0.95992 - 5 + NaN NaN 119072.8 NaN 16683 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20777 84.843 NaN 170900 35 0 14336 0.261 + 9585 HRVRERPL 8 58 531.8164505142319 1061.6183480952636 2 531.8165283203125 MULTI HCD FTMS 0 0 0 20769 68475.78125 0.8131990437078366 1 -0.032684326171875 8 Unmodified _HRVRERPL_ REV__ENST00000505602.1_1_3:128598473-128598902:+|nuORF 4.3292370932331545 0.5355693454741696 2 {I|L} 1 -1 5.4846 0 0 0.51662 0 0 390.28987016733237 555.2199801080686 945.509850275401 0 0 0 0 0 0 0 0 0 {I|L} 0.51662 + + 43 + NaN NaN 115868.8 NaN 16684 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20778 84.846 NaN 154350 35 0 36355 0.261 + -1 WCVPILVL 8 45 500.28955820650185 998.5645634798037 2 500.7910461425781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _WC(Carbamidomethyl (C))VPILVL_ REV__ENSG00000213937|ENST00000445369|CLDN9 17.086550045450526 0.4680768486079041 2 {I|L}V{I|L} 3 -1 33.94 0 0 3.3989 0 0 655.3224354474625 0 655.3224354474625 0 26.95046257204389 0 0 0 0.9247425010840047 0 0 0 {I|L}V{I|L} 3.3989 + + 24 NaN NaN 114198.5 NaN 16685 4091 20769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20780 84.851 NaN 809690 35 0 26118 0.327 -1 0 114 567.3307994004714 1132.6470458677427 2 567.3311157226562 MULTI HCD FTMS 0 0 0 20779 610912.5 0.3324993805563686 17 -0.42694854736328125 1 NaN NaN 2 {[HG]|PP}NGH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V 8 -1 15.067 0 0 1.3302 0 0 0 268.1236971490844 268.1236971490844 0.4626593516915296 0 0 0 0 1.142159058960253 0 0.3494850021680094 0 {[HG]|PP}NGH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V 1.3302 - 618 + NaN NaN 209395 NaN 16686 4092 20779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20781 84.855 NaN 192330 35 0 25276 0.261 + 22662 QWPEGLKFLF 10 52 632.8396308169985 1263.6647087007968 2 632.8402099609375 MULTI HCD FTMS 0 0 0 20779 51711.5625 0.5583081216275443 -5 0.10674285888671875 2 Unmodified _QWPEGLKFLF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 27.628801355627647 0.2527626205058048 2 [WQ]KK 4 7 25.947 0 0 2.0533 0 0 0 690.2965792291624 690.2965792291624 18.95750937337162 0 0 0 0 0.3807196863200844 1.2218487496163564 0 0 [WQ]KK 2.0533 - 55 + NaN NaN 121825.1 NaN 16687 4092 20779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20783 84.86 NaN 1257100 35 0 78186 0.327 + 21364 PTKVSRHA 8 96 448.2589036888358 894.5032544444716 2 448.2589416503906 MULTI HCD FTMS 0 0 0 20782 1119640.75 0.9316110195437948 2 -0.04862213134765625 1 Unmodified _PTKVSRHA_ ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;SRRM2|p.A921Efs*27|1|0.11|ENSG00000167978|chr16:2763289-2763290|-/AACAAAACTGGAGGCTTCAAACTTC|frameshift_variant 7.910154910731844 0.5302565402355366 2 Q[{M(Oxidation (M))|F}V] 3 7 9.4479 0 0 1.0562 0 0 502.2984951959063 0 502.2984951959063 0 0.44655210834411463 0 0 0 0.5010912013506126 0 0 0 Q[{M(Oxidation (M))|F}V] 1.0562 - 31 NaN NaN 281608.8 NaN 16688 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20784 84.864 NaN 1260600 35 0 48941 0.261 -1 0 119 553.8300991066263 1105.6456452800526 2 553.8302612304688 MULTI HCD FTMS 0 0 0 20782 1450462.25 0.6453879258369682 11 -0.2836456298828125 2 NaN NaN 2 [{I|L}T]{[TV]|[{I|L}S]}QVRAN 9 -1 17.395 0 0 1.5733 0 0 0 120.06780658149583 120.06780658149583 2.30874315413652 0 0 0 0 0.2614393726401688 1.154901959985743 0.566901560044258 0.3252574989159953 [{I|L}T]{[TV]|[{I|L}S]}QVRAN 1.5733 - 905 NaN NaN 286450.3 NaN 16689 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20785 84.868 NaN 265060 35 0 51418 0.261 + 35697 YYLDAVVSF 9 44 538.7686946212407 1075.5228363092813 2 538.7691650390625 MULTI HCD FTMS 0 0 0 20782 151745.484375 0.2357667147115525 11 -0.2836456298828125 3 Unmodified _YYLDAVVSF_ ENSG00000072364|ENST00000265343|AFF4 30.636539890814138 0.10832830463492794 2 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 9 5 + 51.717 0 0 4.8086 4.8086 91.252 0 0 0 2.164537177296495 44.75440627993265 2.164537177296495 51.71713116385931 0 1.7614393726401687 0 0 0 [VS]{M(Oxidation (M))|F}[YE]VVS{M(Oxidation (M))|F} 4.8086 - 54 NaN NaN 130094.1 NaN 16690 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20786 84.871 NaN 100500 35 0 13029 0.261 + 32714 WPMDFIVI 8 44 510.7660878671284 1019.5176228010569 2 510.7842712402344 MULTI HCD FTMS 0 0 0 20782 49617.99609375 0.33281507919622616 11 -0.2836456298828125 4 Unmodified _WPMDFIVI_ REV__ENSG00000130150|ENST00000380492|MOSPD2;REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 5.760428011301431 0.5334459684533844 2 MV{I|L} 3 -1 21.682 0 0 2.1267 0 0 0 673.2841890924436 673.2841890924436 9.018637558036673 0 0 0 0 0 0 0 0 MV{I|L} 2.1267 - 12 + NaN NaN 105854.6 NaN 16691 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20787 84.874 NaN 106420 35 0 7724.1 0.261 + 741 ARPNLNHI 8 55 467.7632110495746 NaN 0 467.7631530761719 PEAK HCD FTMS 0 0 0 20782 57649.21484375 0.7261208694006716 3 -0.08805084228515625 5 Unmodified _ARPNLNHI_ REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 2.302733041254933 0.38822285293237185 2 H 1 -1 4.6041 0 0 0.4932 0 0 100.11075940208043 693.3305435070728 793.4413029091533 0 0 0 0 0 0 0 0 0 H 0.4932 + + 15 + NaN NaN 124400.6 NaN 16692 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20788 84.878 NaN 250230 35 0 25604 0.261 + 4619 EYLYFFRVL 9 53 625.3341681839585 1248.6537834347168 2 625.8362426757812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _EYLYFFRVL_ ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF 114.6490535036381 0.0021834323520089267 2 [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 9 0 + 108.57 0 0 8.6951 8.6951 98.335 0 0 0 23.54425638516595 16.478174818886373 16.478174818886373 108.57177203530306 0 2.9247425010840047 1.6989700043360187 2.504432191740108 0 + + [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 8.6951 + + 246 NaN NaN 125659.8 NaN 16693 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20789 84.881 NaN 56272 35 0 5965.3 0.264 + -1 CGYEAIMA 8 37 437.17818672670535 NaN 0 437.1772155761719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _CGYEAIM(Oxidation (M))A_ REV__ENSG00000179630|ENST00000325686|LACC1 0.7936320650641473 0.38822285293237185 2 N 1 -1 1.5938 0 0 0.1827 0 0 436.4008242817326 318.88508020572505 755.2859044874576 0 0 0 0 0 0 0 0 0 N 0.1827 - 1 + NaN NaN 92202.4 NaN 16694 4093 20782 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20791 84.886 NaN 493940 35 0 41829 0.327 + 20373 NYTSLLVTW 9 81 548.7872720881899 1095.5599912431796 2 548.7877197265625 MULTI HCD FTMS 0 0 0 20790 164866.328125 0.8218316032058103 1 -0.02283477783203125 1 Unmodified _NYTSLLVTW_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 71.92227651296345 0.008466197542043549 2 [Y{I|L}]S{[QS]|[NT]}{I|L}VTW 9 3 + 83.495 0 0 7.6213 7.6213 88.3 0 0 0 14.130580748770356 37.174165578762484 14.130580748770356 3.481362441963327 0 1.9247425010840047 1.3010299956639813 1.3494850021680094 1.1421590589602533 [Y{I|L}]S{[QS]|[NT]}{I|L}VTW;[Y{I|L}]Q{[CA]|SS}{I|L}VTW;[Y{I|L}]Q{I|L}{[CA]|SS}VTW;[YV]T{[QS]|[NT]}{I|L}VTW;{[TV]|[{I|L}S]}Y{[QS]|[NT]}{I|L}VTW;{[CT]|[{M(Oxidation (M))|F}G]}TV{[CA]|SS}{I|L}VTW;[Y{I|L}]Q{[WT]|[RM]}VT[VS];[Y{I|L}][AG]{[CA]|SS}{I|L}VTW;{[CT]|[{M(Oxidation (M))|F}G]}TV{I|L}{[CA]|SS}VTW;[Y{I|L}][AG]{I|L}{[CA]|SS}VTW 7.6213;7.3035;6.9845;6.3197;6.0978;5.4427;5.4348;5.4204;5.1237;5.1014 -;-;-;-;-;-;-;-;-;- 1439 NaN NaN 160165.9 NaN 16695 4094 20790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20792 84.89 NaN 314770 35 0 49855 0.261 -1 LYPVTVNMLF 10 48 606.8199952086104 1211.6254374840207 2 606.8196411132812 MULTI HCD FTMS 0 0 0 20790 135842.984375 0.6293121862786152 -6 0.132598876953125 2 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 32.78568957990786 0.20801173326193015 2 [Y{I|L}]PV{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F} 10 -1 + 57.893 0 0 4.7781 4.7781 91.391 0 0 0 25.764837301042718 57.89258754269092 25.764837301042718 57.89258754269092 0 1 2 0.4247425010840047 0 [Y{I|L}]PV{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F} 4.7781 + + 22 NaN NaN 143850.4 NaN 16696 4094 20790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20793 84.894 NaN 165350 35 0 34577 0.261 -1 0 40 645.3781114779978 644.3708350113977 1 645.3781127929688 MULTI HCD FTMS 0 0 0 20790 70342.7421875 0.33375339763157724 -10 0.1900482177734375 3 NaN NaN 2 M 1 -1 3.0989 0 0 0.48093 0 0 54.03204214206023 456.27521692447505 510.30725906653527 0 0 0 0 0 0 0 0 0 M 0.48093 - 2 + NaN NaN 107312.2 NaN 16697 4094 20790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20794 84.897 NaN 133850 35 0 21468 0.261 + -1 SCSTFDLVDDI 11 37 636.2791288763641 NaN 0 636.2794799804688 PEAK HCD FTMS 0 0 0 20790 49293.13671875 0.8752909245146518 1 -0.02283477783203125 4 Carbamidomethyl (C) _SC(Carbamidomethyl (C))STFDLVDDI_ REV__ENSG00000148459|ENST00000376215|PDSS1;REV__ENST00000470978.1_1_10:27023607-27035399:+|nuORF;REV__nc|ENSG00000148459|Q5T2R2-3|PDSS1 2.9952420565917617 0.33362350433860827 2 WV 2 -1 10.969 0 0 0.86334 0 0 166.0474840014329 816.3253267877561 982.3728107891891 0 0 0 0 0 0 0 0 0 WV 0.86334 - 12 + NaN NaN 117050.1 NaN 16698 4094 20790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20795 84.901 NaN 79948 35 0 9670.3 0.264 + 31255 VVSSLSLF 8 47 426.2461247529218 NaN 0 426.5621032714844 PEAK HCD FTMS 0 0 0 20790 15491.9765625 1 0 0 5 Unmodified _VVSSLSLF_ ENST00000608694.1_1_7:129250897-129251161:-|nuORF 2.577480529830294 0.38822285293237185 2 M 1 8 3.0989 0 0 0.36438 0 0 485.28840931854046 231.12363611392814 716.4120454324686 0 0 0 0 0 0 0 0 0 M 0.36438 - 3 + NaN NaN 97520.4 NaN 16699 4094 20790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20796 84.904 NaN 130370 35 0 17186 0.261 + 19690 NWTFRLTI 8 55 525.7900823749625 NaN 0 525.7900390625 PEAK HCD FTMS 0 0 0 20790 31724.169921875 0.7744130627648002 1 -0.02283477783203125 6 Unmodified _NWTFRLTI_ REV__ENSG00000103335|ENST00000301015|PIEZO1;REV__ENST00000484567.5_1_16:88782015-88783673:-|nuORF 25.399314129420986 0.3813806174882625 2 T{I|L} 2 -1 18.583 0 0 1.7706 0 0 131.09632578332486 701.3138207373819 832.4101465207068 0 0 0 0 0 1 0 0 0 T{I|L} 1.7706 + + 13 + NaN NaN 116702.9 NaN 16700 4094 20790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20798 84.909 NaN 1777200 35 0 81471 0.326 -1 0 115 545.3169038290621 1088.619254724924 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20797 2274439.25 0.5513034329584273 13 -0.3527374267578125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.109 0 0 1.0205 0 0 923.5407767969929 0 923.5407767969929 0 -1.7203248208638744 -1.7203248208638744 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0205 - 187 + NaN NaN 377511 NaN 16701 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20799 84.913 NaN 871030 35 0 307250 0.261 + 28412 TPFLYDLVM 9 63 557.7778956018665 1113.5412382705329 2 557.7783203125 MULTI HCD FTMS 0 0 0 20797 559928.8125 0.6528482083596765 2 -0.06549835205078125 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 100.37149154755038 0.004254194004462789 2 {I|L}YD{I|L}V{M(Oxidation (M))|F} 6 3 76.631 0 0 6.8817 0 0 345.1686268537125 0 345.1686268537125 0 59.64123782136497 0 0 0 2.8494850021680094 0 0.8494850021680094 0 + {I|L}YD{I|L}V{M(Oxidation (M))|F} 6.8817 + + 443 NaN NaN 236259 NaN 16702 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20800 84.917 NaN 821420 35 0 141330 0.261 + 22817 QYLLVTALY 9 50 542.3078678069326 1082.601182680665 2 542.30810546875 MULTI HCD FTMS 0 0 0 20797 459204.25 0.5644946363056922 2 -0.06549835205078125 3 Unmodified _QYLLVTALY_ ENSG00000165389|ENST00000298130|SPTSSA 71.92227651296345 0.008466197542043549 2 VTA{I|L}Y 5 4 73.315 0 0 6.7722 0 0 517.28911025215 0 517.28911025215 0 54.10728139283883 0 0 0 2.5 0 1.274227503252014 0 + VTA{I|L}Y 6.7722 + + 112 NaN NaN 215392.5 NaN 16703 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20801 84.92 NaN 309180 35 0 11355 0.261 + 8079 GILWRVLFF 9 90 575.8419496470875 1149.669346360975 2 575.84228515625 MULTI HCD FTMS 0 0 0 20797 204816.046875 0.19452587143350678 29 -0.7111587524414062 4 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}{I|L}V 3 7 16.198 0 0 1.4089 0 0 166.1919430253991 621.2365206354124 787.4284636608115 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}V 1.4089 - 229 + NaN NaN 130050.6 NaN 16704 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20802 84.923 NaN 242810 35 0 18483 0.261 + 22050 QGKVGSQDIL 10 79 522.7898096932262 1043.5650664532523 2 523.3036499023438 MULTI HCD FTMS 0 0 0 20797 8087.98291015625 0.112341043713162 3 -0.0882415771484375 5 Unmodified _QGKVGSQDIL_ ENST00000496144.5_1_8:100515159-100589873:+|nuORF 15.248480904072842 0.3684828712757339 2 {I|L}{I|L} 2 8 21.198 0 0 2.0313 0 0 799.3845532405153 0 799.3845532405153 0 4.7273429256591015 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.0313 + + 141 NaN NaN 135215.1 NaN 16705 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20803 84.927 NaN 287330 35 0 171680 0.261 -1 0 43 612.3333644856341 611.326088019034 1 612.333251953125 MULTI HCD FTMS 0 0 0 20797 113799.328125 0.8816252640778738 -1 0.02283477783203125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 150817 NaN 16706 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20804 84.93 NaN 125590 35 0 9050.8 0.264 + 3942 EQAIDITK 8 58 459.2497976291046 916.4850423250092 2 459.25 MULTI HCD FTMS 0 0 0 20797 96021.5703125 0.8517201915524152 6 -0.1765289306640625 7 Unmodified _EQAIDITK_ REV__ENSG00000278311|ENST00000613102|GGNBP2;REV__nc|ENSG00000278311|Q9H3C7-3|GGNBP2 5.230669730166228 0.5342319408533849 2 Y 1 -1 8.0989 0 0 0.8837 0 0 577.3140961353593 173.0815371149047 750.3956332502639 0 0 0 0 0 0.5 0 0 0 Y 0.8837 - 66 + NaN NaN 113404.8 NaN 16707 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20805 84.933 NaN 175220 35 0 52837 0.261 + 31012 VSLGRRNK 8 44 465.2855475539675 928.556542174735 2 465.285888671875 MULTI HCD FTMS 0 0 0 20797 65627.2734375 0.35354801764917904 3 -0.0882415771484375 8 Unmodified _VSLGRRNK_ AHDC1|p.K586Nfs*37|1|0.33|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant;AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1 2.577480529830294 0.5381683276125971 2 N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 7 10.458 0 0 1.1262 0 0 552.3697573620382 0 552.3697573620382 0 5.368931070804594 0 0 0 0 0 0 0 N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.1262 - 4 + NaN NaN 113700.4 NaN 16708 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20806 84.937 NaN 123560 35 0 17486 0.261 + 33099 YDSNPTQLNYG 11 50 636.2791288763641 NaN 0 636.2785034179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _YDSNPTQLNYG_ ENSG00000095713|ENST00000370597|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;nc|ENSG00000095713|Q9NQ79-3|CRTAC1 2.735195868890462 0.3343611804837492 2 WV 2 11 10.969 0 0 0.86334 0 0 166.05137404045632 816.3238794143199 982.3752534547762 0 0 0 0 0 0 0 0 0 WV 0.86334 - 12 + NaN NaN 111870.9 NaN 16709 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20807 84.94 NaN 134860 35 0 32358 0.263 -1 NQIICFSF 8 42 514.7457275390625 NaN 0 514.7457275390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _NQIIC(Carbamidomethyl (C))FSF_ ENST00000492136.1_1_3:33434749-33437792:-|nuORF 28.486842064014134 0.3795038552627567 2 S{M(Oxidation (M))|F}H 3 -1 29.297 0 0 2.8513 0 0 165.07659419374244 488.20334802799067 653.2799422217331 0 0 0 0 0 1.3494850021680094 0 0.3494850021680094 0 S{M(Oxidation (M))|F}H 2.8513 - 45 + NaN NaN 123297.5 NaN 16710 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20808 84.943 NaN 87325 35 0 10626 0.261 + 12208 KKSAATSLE 9 45 467.7632110495746 NaN 0 467.76336669921875 PEAK HCD FTMS 0 0 0 20797 34446.15234375 0.43386662169022405 5 -0.143768310546875 11 Unmodified _KKSAATSLE_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN 1.844237919475145 0.28630992268396543 2 {I|L} 1 8 1.5938 0 0 0.17073 0 0 638.3666798122367 179.03415857486564 817.4008383871023 0 0 0 0 0 0 0 0 0 + {I|L} 0.17073 + + 4 + NaN NaN 130817.8 NaN 16711 4095 20797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20810 84.948 NaN 392800 35 0 18119 0.327 + 23928 RTQRAAPL 8 83 456.77217067976625 911.5297884263325 2 456.7723693847656 MULTI HCD FTMS 0 0 0 20809 348686.71875 0.29984529367061125 6 -0.1533203125 1 Unmodified _RTQRAAPL_ ENST00000535200.1_1_12:120648776-120650425:+|nuORF 7.910154910731844 0.5302565402355366 2 A 1 7 8.8515 0 0 0.97106 0 0 105.07997885714788 732.4009188985295 837.4808977556775 0 0 0 0 0 0.4247425010840047 0 0 0 + A 0.97106 + + 26 + NaN NaN 160314.1 NaN 16712 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20811 84.953 NaN 320570 35 0 63644 0.261 + 6431 FPIDDVFVGM 10 62 578.2725242172125 1154.530495501225 2 578.2724609375 MULTI HCD FTMS 0 0 0 20809 136745.765625 0.48312066974787077 7 -0.17609405517578125 2 Oxidation (M) _FPIDDVFVGM(Oxidation (M))_ ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4 58.678817012210395 0.04622659334010173 2 {NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 10 5 + 62.676 0 0 5.4287 5.4287 92.5 0 0 0 53.182503180159344 6.222412206649466 6.222412206649466 62.67606240177031 0 2 1.3010299956639813 0 0 {NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 5.4287 - 115 + NaN NaN 142506.7 NaN 16713 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20812 84.956 NaN 427040 35 0 57285 0.261 + 22724 QYDGIFYEF 9 50 591.2610569186636 1180.507560904127 2 591.7633666992188 MULTI HCD FTMS 0 0 0 20809 159836.625 0.43984841365446653 -4 0.09754180908203125 3 Unmodified _QYDGIFYEF_ ENSG00000136783|ENST00000374767|NIPSNAP3A 57.72198328787511 0.020768266150574023 2 [YE]VGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 3 + 68.343 0 0 5.7893 5.7893 86.132 0 0 0 6.197887582883936 13.964687239169606 6.197887582883936 6.197887582883936 0 1.4247425010840047 0 0.3494850021680094 1.1549471895720984 [YE]VGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA]Q{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Q{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]N{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]VGQ{[NV]|[RG]}PE{M(Oxidation (M))|F};[YE]VG[AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA]Q{[NV]|[RG]}PE{M(Oxidation (M))|F};{[ET]|[MV]}{[MS]|[{M(Oxidation (M))|F}A]}Q{[NV]|[RG]}PE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA][AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]N{[VA]|[{I|L}G]}{[NV]|[RG]}PE{M(Oxidation (M))|F} 5.7893;5.2643;5.0093;4.778;4.2897;4.0309;3.7647;3.5097;3.5059;3.2784 -;-;-;-;-;-;-;-;-;- 313 NaN NaN 162339.8 NaN 16714 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20813 84.96 NaN 211660 35 0 75305 0.261 -1 0 50 521.2913994641723 520.2841229975722 1 522.2947998046875 MULTI HCD FTMS 0 0 0 20809 79630.90625 0.929703586837242 -6 0.1496429443359375 4 NaN NaN 2 G 1 -1 4.6041 0 0 0.88492 0 0 72.56700371221912 387.67560754947505 460.24261126169415 0 0 0 0 0 0 0 0 0 G 0.88492 - 3 + NaN NaN 119333.5 NaN 16715 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20814 84.963 NaN 165330 35 0 20776 0.261 + 22663 QWPEGLKFLF 10 54 632.8396308169985 1263.6647087007968 2 632.8381958007812 MULTI HCD FTMS 0 0 0 20809 70622.546875 0.7624821139437519 -1 0.0394287109375 5 Unmodified _QWPEGLKFLF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 21.536976647645854 0.3096624038397699 2 [WQ]KKC 5 7 17.469 0 0 1.3824 0 0 0 587.2813204400999 587.2813204400999 10.47950971637551 0 0 0 0 0.4247425010840047 1.3979400086720375 0 0 [WQ]KKC 1.3824 - 43 + NaN NaN 126626 NaN 16716 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20815 84.966 NaN 90454 35 0 11414 0.262 + 32431 WAWPVFLL 8 46 516.2913208007812 NaN 0 516.2913208007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _WAWPVFLL_ ENST00000540626.5_1_11:71714133-71714271:-|nuORF 17.086550045450526 0.386433553673079 2 {I|L}{M(Oxidation (M))|F} 2 7 19.024 0 0 1.8459 0 0 131.0911364020415 636.3008516900999 767.3919880921414 0 0 0 0 0 0.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8459 - 11 + NaN NaN 105439 NaN 16717 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20816 84.969 NaN 158440 35 0 8865.6 0.261 -1 FPVVEASWSML 11 60 641.3131054989782 NaN 0 641.31298828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _FPVVEASWSM(Oxidation (M))L_ ENSG00000118600|ENST00000261234|RXYLT1 28.494509381512117 0.19052665381949951 2 {M(Oxidation (M))|F}SW 3 -1 15.177 0 0 1.1852 0 0 131.0878200209748 726.3472384088499 857.4350584298247 0 0 0 0 0 0.5 0 0.5 0 {M(Oxidation (M))|F}SW 1.1852 - 30 + NaN NaN 119607.8 NaN 16718 4096 20809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20818 84.974 NaN 257970 35 0 28537 0.327 + 13605 KYPENFFLL 9 52 585.8129910707257 1169.6114292082514 2 585.8128662109375 MULTI HCD FTMS 0 0 0 20817 83618.9765625 0.28112829766444986 15 -0.371795654296875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 36.506200033944 0.08138327636155518 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.0949 0 0 778.3674843278318 0 778.3674843278318 0 18.190133341820882 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0949 + + 187 NaN NaN 124406.9 NaN 16719 4097 20817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20819 84.979 NaN 515390 35 0 71496 0.261 + 22777 QYILFPLRF 9 71 598.8450364420323 1195.6755199508646 2 598.844970703125 MULTI HCD FTMS 0 0 0 20817 155950.125 0.015596252402065964 53 -1.3762359619140625 2 Unmodified _QYILFPLRF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 65.23502041540118 0.010630085227462206 2 [Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]} 9 6 + 44.815 0 0 3.7481 3.7481 80.713 0 0 0 0.01226231188276472 0.01226231188276472 0.01226231188276472 0.01226231188276472 0 1.3441876774005248 1.3010299956639813 0 0 [Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F};[YQ]{I|L}{I|L}{M(Oxidation (M))|F}[RP]{I|L}{M(Oxidation (M))|F} 3.7481;3.747;3.444 -;+;- + 191 NaN NaN 194251.9 NaN 16720 4097 20817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20820 84.982 NaN 377010 35 0 158090 0.261 + 22399 QPRRQRGLL 9 77 562.3440692743559 1122.6735856155117 2 562.3441772460938 MULTI HCD FTMS 0 0 0 20817 129241.2890625 0.23753859257168594 15 -0.371795654296875 3 Unmodified _QPRRQRGLL_ REV__ENST00000331434.6_1_8:146277984-146278266:+|nuORF 2.0597508629832335 0.3354026079994024 2 W[Y{I|L}] 3 -1 7.4473 0 0 0.66335 0 0 642.4263759981274 0 642.4263759981274 0 -0.4845500650402803 -0.4845500650402803 0 0 0 0 0 0 W[Y{I|L}] 0.66335 - 137 + NaN NaN 164754.3 NaN 16721 4097 20817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20821 84.986 NaN 204830 35 0 16371 0.261 -1 0 61 582.8052619854803 1163.5959710377606 2 582.8057250976562 MULTI HCD FTMS 0 0 0 20817 54736.71875 0.013131082095773405 31 -0.763671875 4 NaN NaN 2 {I|L}T{I|L}W 4 -1 55.433 0 0 4.7639 0 0 632.2934932411267 0 632.2934932411267 0 46.76091259055681 0 0 0 1.9247425010840047 0 0.4247425010840047 0 {I|L}T{I|L}W 4.7639 - 109 NaN NaN 123811 NaN 16722 4097 20817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20822 84.989 NaN 147870 35 0 19391 0.261 -1 0 45 529.3017346157284 1056.5889162982567 2 529.3023071289062 MULTI HCD FTMS 0 0 0 20817 79382.5703125 0.8221944299535707 -10 0.23035430908203125 5 NaN NaN 2 Q{I|L} 2 -1 25.969 0 0 2.4578 0 0 797.4350567037148 0 797.4350567037148 0 11.989700043360187 0 0 0 0.5 0 0 0 Q{I|L} 2.4578 - 28 NaN NaN 114972.4 NaN 16723 4097 20817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20823 84.992 NaN 165220 35 0 11036 0.261 + 224 AFAREHGLI 9 56 507.2794531655406 NaN 0 507.27923583984375 PEAK HCD FTMS 0 0 0 20817 29687.7578125 0.8761525340647452 1 -0.02274322509765625 6 Unmodified _AFAREHGLI_ ENSG00000104388|ENST00000262646|RAB2A;ENSG00000129472|ENST00000397762|RAB2B;ENST00000396696.1_1_8:61504408-61533325:+|nuORF;ENST00000429861.5_1_8:61471430-61504606:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;ENST00000530071.5_1_8:61496609-61533325:+|nuORF;nc|ENSG00000104388|P61019-2|RAB2A;nc|ENSG00000129472|Q8WUD1-2|RAB2B 10.823927491677226 0.2427956001690155 2 M 1 9 11.99 0 0 1.1841 0 0 637.3288820617469 241.15586267642814 878.484744738175 0 0 0 0 0 0.5 0 0 0 M 1.1841 - 54 + NaN NaN 119873 NaN 16724 4097 20817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20825 84.997 NaN 1273700 35 0 54914 0.327 -1 0 126 553.8300991066263 1105.6456452800526 2 553.830322265625 MULTI HCD FTMS 0 0 0 20824 689133.875 0.3066323733763099 16 -0.39128875732421875 1 NaN NaN 2 D 1 -1 10.066 0 0 0.91044 0 0 61.0526324288274 926.5192834867022 987.5719159155296 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.91044 - 482 + NaN NaN 285593.8 NaN 16725 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20826 85.001 NaN 563190 35 0 92293 0.262 + 23260 RGREAPLP 8 89 448.2589036888358 894.5032544444716 2 448.2590637207031 MULTI HCD FTMS 0 0 0 20824 389393.375 0.32399960352224516 7 -0.1828155517578125 2 Unmodified _RGREAPLP_ REV__ENSG00000106003|ENST00000222725|LFNG;REV__nc|ENSG00000106003|Q8NES3-3|LFNG 2.302733041254933 0.5385759549224092 2 D 1 -1 11.109 0 0 1.2419 0 0 761.4629082304076 0 761.4629082304076 0 3.0054637071968138 0 0 0 0 0 0 0 D 1.2419 - 23 + NaN NaN 191056.6 NaN 16726 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20827 85.005 NaN 554950 35 0 18264 0.261 -1 0 108 567.3307994004714 1132.6470458677427 2 567.3309936523438 MULTI HCD FTMS 0 0 0 20824 328085.59375 0.17856609038339105 23 -0.5410385131835938 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1914 0 0 967.5681559525068 0 967.5681559525068 0 0.39590623023812554 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1914 - 581 + NaN NaN 177402.2 NaN 16727 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20828 85.008 NaN 1146700 35 0 193260 0.261 + 27283 SYQDFFEAI 9 80 560.2535123543116 1118.4924717754232 2 560.2537841796875 MULTI HCD FTMS 0 0 0 20824 486241.03125 0.20038550193939653 -4 0.11107635498046875 4 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 93.16586880292088 0.00444300900000894 2 {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 9 0 + 82.674 0 0 7.3916 7.3916 90.997 0 0 0 4.137342758552691 57.779419084123234 4.137342758552691 9.208187539523749 0 2.305462187404089 0 1.579689690656103 0 + + {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]DE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[H{I|L}][C(Carbamidomethyl (C))D]{M(Oxidation (M))|F}A{I|L};YY[PS][YN]EA{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[H{I|L}]MD[C(Carbamidomethyl (C))S]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[H{I|L}]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))D]A{I|L} 7.3916;6.5683;6.0938;5.2705;4.9979;4.1746;1.3167;1.1514;1.0526;1.0018 +;-;-;-;-;-;-;-;-;- + 1000 NaN NaN 267514.2 NaN 16728 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20829 85.012 NaN 360780 35 0 46255 0.261 + 4978 FAVTLETVL 9 63 496.7866521712995 991.5587514093991 2 496.7867431640625 MULTI HCD FTMS 0 0 0 20824 351340.25 0.6671311650019374 -5 0.13686370849609375 5 Unmodified _FAVTLETVL_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2 88.90359156742426 0.00455469703666567 2 {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L} 9 0 + 73.911 0 0 7.454 7.454 96.242 0 0 0 4.137342758552691 48.00357438670538 4.137342758552691 73.91109403625734 0 2.1861818737241734 0 1.1237125054200234 0 + + {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L} 7.454 + + 728 NaN NaN 152862.7 NaN 16729 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20830 85.015 NaN 772560 35 0 141730 0.261 + 26830 SYIELPAYL 9 67 534.784085143605 1067.55361735401 2 534.7845458984375 MULTI HCD FTMS 0 0 0 20824 191187.859375 0.6098215472931768 -2 0.0488128662109375 6 Unmodified _SYIELPAYL_ ENSG00000162511|ENST00000294507|LAPTM5 88.90359156742426 0.00455469703666567 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PAY{I|L} 9 0 + 76.807 0 0 7.1947 7.1947 93.718 0 0 0 5.6424927368725974 47.80902815397354 5.6424927368725974 22.20036776622557 0 2.5994850021680094 0 0.6989700043360187 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PAY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V{I|L}EPT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PS{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PVT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}EAY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}VPT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V{I|L}E{M(Oxidation (M))|F}[TP];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}V{M(Oxidation (M))|F}[TP];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V[EP]T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{I|L}{[{M(Oxidation (M))|F}C]|[YS]}{I|L} 7.1947;5.1151;4.979;4.8421;4.572;4.4604;3.9854;3.3306;3.1682;3.0989 +;-;-;-;-;-;-;-;-;- + 1246 NaN NaN 223032.9 NaN 16730 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20831 85.018 NaN 309370 35 0 20292 0.261 + 20921 PKTRESSLK 9 83 523.3032458694933 1044.5919388057864 2 523.3029174804688 MULTI HCD FTMS 0 0 0 20824 96442.953125 0.5683731138252902 -8 0.198455810546875 7 Unmodified _PKTRESSLK_ ENSG00000137843|ENST00000560346|PAK6;nc|ENSG00000137843|Q9NQU5-2|PAK6 5.731851221503515 0.3075653528928475 2 T{I|L}C(Carbamidomethyl (C))S[VG]P{M(Oxidation (M))|F} 8 8 24.781 0 0 2.3724 0 0 165.1537503128407 0 165.1537503128407 0 19.296831374325905 0 0 0 0 0 0 0 T{I|L}C(Carbamidomethyl (C))S[VG]P{M(Oxidation (M))|F} 2.3724 - 133 + NaN NaN 141965.5 NaN 16731 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20832 85.022 NaN 194680 35 0 21150 0.261 + 12340 KMTLKELSL 9 58 531.8161413598402 1061.6177297864804 2 531.8167114257812 MULTI HCD FTMS 0 0 0 20824 13775.927734375 0.1563594284894437 -5 0.13686370849609375 8 Unmodified _KMTLKELSL_ REV__ENST00000377630.9_1_20:18445902-18445998:-|nuORF 7.289230182591677 0.29575926068275815 2 TV{M(Oxidation (M))|F}[HD]V[{I|L}T] 8 -1 20.111 0 0 1.8944 0 0 131.14591310615668 0 131.14591310615668 0 14.537881139012043 0 0 0 0 0 0.4247425010840047 0 TV{M(Oxidation (M))|F}[HD]V[{I|L}T] 1.8944 - 191 + NaN NaN 127024.8 NaN 16732 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20833 85.025 NaN 234160 35 0 16983 0.261 + 22902 QYPVIIHLIW 10 62 641.3712104567475 1280.7278679802948 2 641.3721923828125 MULTI HCD FTMS 0 0 0 20824 75452.2265625 0.35853781208251917 -9 0.21450042724609375 9 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 67.34385681178166 0.020732631418547785 2 N{I|L}HK[H{I|L}]{I|L}W 8 6 48.237 0 0 3.7664 0 0 221.11572422857563 0 221.11572422857563 0 26.30124426523686 0 0 0 1.1861818737241734 0 0 0 N{I|L}HK[H{I|L}]{I|L}W 3.7664 - 219 + NaN NaN 124649.8 NaN 16733 4098 20824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20835 85.03 NaN 266230 35 0 34844 0.327 + 4620 EYLYFFRVL 9 55 625.3341681839585 1248.6537834347168 2 625.3346557617188 MULTI HCD FTMS 0 0 0 20834 141700.265625 0.9948893098856957 3 -0.07177734375 1 Unmodified _EYLYFFRVL_ ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF 114.6490535036381 0.0021834323520089267 2 [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 9 0 + 94.821 0 0 7.5939 7.5939 96.65 0 0 0 27.22357194224834 16.478174818886373 16.478174818886373 94.82115940138605 0 2.9247425010840047 0 3.004432191740108 0 + + [YE]{I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}RV{I|L} 7.5939 + + 168 NaN NaN 128860.6 NaN 16734 4099 20834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20836 85.034 NaN 164120 35 0 21128 0.261 + 1448 AYSILWDLKF 10 51 628.3388722255123 1254.6631915178245 2 628.339111328125 MULTI HCD FTMS 0 0 0 20834 42870.2265625 0.5607662710582852 1 -0.022796630859375 2 Unmodified _AYSILWDLKF_ ENSG00000148248|ENST00000371989|SURF4;ENST00000465565.1_1_9:136230607-136232949:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 28.494509381512117 0.24525010509582015 2 {I|L}W{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 6 4 35.406 0 0 2.822 0 0 434.21495253730626 0 434.21495253730626 0 32.30713133096572 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + {I|L}W{NN|[MP]|[D{I|L}]|[EV]}K{M(Oxidation (M))|F} 2.822 + + 34 NaN NaN 123430.9 NaN 16735 4099 20834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20837 85.038 NaN 121570 35 0 11540 0.262 + 14184 LALFMDVVL 9 55 510.79326506195196 NaN 0 510.8023376464844 PEAK HCD FTMS 0 0 0 20834 12818.9111328125 1 0 0 3 Unmodified _LALFMDVVL_ REV__ENST00000392663.6_1_2:170350320-170356023:+|nuORF 12.531546534597751 0.23452071659215576 2 {I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA 6 -1 13.633 0 0 1.3371 0 0 131.08207454079178 241.15561853580314 372.23769307659495 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EA 1.3371 - 50 + NaN NaN 117985.1 NaN 16736 4099 20834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20838 85.041 NaN 154240 35 0 13115 0.261 + 20374 NYTSLLVTW 9 58 548.7872720881899 1095.5599912431796 2 549.289306640625 MULTI HCD FTMS 0 0 0 20834 35307.17578125 0.24983976332847363 6 -0.15008544921875 4 Unmodified _NYTSLLVTW_ ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant 14.405379775768559 0.2358970535022398 2 {M(Oxidation (M))|F}GTV{I|L}{[QS]|[NT]}[TP]{M(Oxidation (M))|F} 10 7 + 42.048 0 0 3.838 3.838 82.729 0 0 0 10.109849771020478 1.974987195809419 1.974987195809419 4.704999916446795 0 1.75 0 0.4247425010840047 0 {M(Oxidation (M))|F}GTV{I|L}{[QS]|[NT]}[TP]{M(Oxidation (M))|F};{M(Oxidation (M))|F}GTV{I|L}{[CA]|SS}V{[WT]|[RM]};{M(Oxidation (M))|F}GTV{[CA]|SS}{I|L}V{[WT]|[RM]};{M(Oxidation (M))|F}PYARRTW;E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[CA]|SS}VTW;E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CA]|SS}{I|L}VTW;{M(Oxidation (M))|F}GHHRR{[WT]|[RM]};{M(Oxidation (M))|F}G{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WW{I|L}{I|L} 3.838;3.4086;3.3422;2.7514;2.6435;2.5772;1.2186;0.011258 -;-;-;-;-;-;-;- 442 + NaN NaN 119127.9 NaN 16737 4099 20834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20839 85.044 NaN 374390 35 0 48775 0.261 + 3938 EPVYIDLTL 9 73 531.7894604730898 1061.5643680129795 2 531.790283203125 MULTI HCD FTMS 0 0 0 20834 92348.1171875 0.096887527981303 -10 0.24723052978515625 5 Unmodified _EPVYIDLTL_ ENSG00000163811|ENST00000407426|WDR43 64.23631603340823 0.01165516075559909 2 SEVT{I|L} 5 6 53.047 0 0 4.9971 0 0 514.2889271466812 0 514.2889271466812 0 36.928031367991565 0 0 0 1.25 0 1.25 0 SEVT{I|L} 4.9971 - 341 NaN NaN 152146.3 NaN 16738 4099 20834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20840 85.048 NaN 259310 35 0 17598 0.261 + -1 LCDGNEVSYF 10 60 602.2516386117288 1202.4887242902576 2 602.2518310546875 MULTI HCD FTMS 0 0 0 20834 51348.01171875 0.584409745352941 -2 0.05547332763671875 6 Carbamidomethyl (C) _LC(Carbamidomethyl (C))DGNEVSYF_ REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF;REV__nc|ENSG00000285053|Q15813-2|TBCE;REV__nc|ENSG00000285053|Q15813|TBCE 14.838274106304384 0.3723198072575719 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}D 3 -1 23.468 0 0 1.9516 0 0 0 811.3277495190263 811.3277495190263 4.471580313422194 0 0 0 0 0 2 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}D 1.9516 + + 132 NaN NaN 137150.5 NaN 16739 4099 20834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20842 85.053 NaN 1550100 35 0 59123 0.326 -1 0 114 545.3169038290621 1088.619254724924 2 545.3170776367188 MULTI HCD FTMS 0 0 0 20841 1827849.875 0.4430542213955076 18 -0.42371368408203125 1 NaN NaN 2 Q 1 -1 10.841 0 0 0.99587 0 0 502.2994084479371 455.2492349741713 957.5486434221084 0 0 0 0 0 0.7742275032520141 0 0 0 Q 0.99587 - 627 + NaN NaN 321828.9 NaN 16740 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20843 85.057 NaN 729220 35 0 261010 0.261 + 28413 TPFLYDLVM 9 68 557.7778956018665 1113.5412382705329 2 557.7781372070312 MULTI HCD FTMS 0 0 0 20841 519787.625 0.6060456474701976 7 -0.182891845703125 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 92.8221339359638 0.0044520161739443126 2 T{I|L}{I|L}ETD{I|L}V{M(Oxidation (M))|F} 9 4 80.826 0 0 7.2584 0 0 63.99537527167656 0 63.99537527167656 0 70.34108775949186 0 0 0 1.4247425010840047 0 1.0994850021680094 0 T{I|L}{I|L}ETD{I|L}V{M(Oxidation (M))|F} 7.2584 - 509 + NaN NaN 201400.1 NaN 16741 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20844 85.061 NaN 246910 35 0 9189 0.261 + 8080 GILWRVLFF 9 88 575.8419496470875 1149.669346360975 2 575.841796875 MULTI HCD FTMS 0 0 0 20841 137037.484375 0.13015257580560333 34 -0.83221435546875 3 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 14.581692164780916 0.23437375358055648 2 V{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 23.672 0 0 2.059 0 0 625.369493921325 0 625.369493921325 0 7.474250108400465 0 0 0 0 0 0 0 + V{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.059 + + 71 + NaN NaN 131407.9 NaN 16742 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20845 85.064 NaN 473320 35 0 83002 0.261 + 17342 LYPVTVNMLF 10 54 606.8199952086104 1211.6254374840207 2 606.8211669921875 MULTI HCD FTMS 0 0 0 20841 215859.453125 1 0 0 4 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 41.8396318013385 0.12944265636084 2 [Y{I|L}]PVTVD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F} 10 2 + 68.192 0 0 5.6282 5.6282 90.748 0 0 0 25.764837301042718 64.21281968974498 25.764837301042718 19.54705724461448 0 1 2 0.4247425010840047 0 [Y{I|L}]PVTVD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[Y{I|L}]PVD{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[Y{I|L}]PVT[{I|L}T]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F};[VP][Y{I|L}]TVD{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F} 5.6282;4.0149;3.5658;2.6784 -;-;-;- 92 NaN NaN 174650.8 NaN 16743 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20846 85.067 NaN 199820 35 0 24736 0.261 + 22818 QYLLVTALY 9 45 542.3078678069326 1082.601182680665 2 542.3080444335938 MULTI HCD FTMS 0 0 0 20841 91465.578125 0.11243760975243967 7 -0.182891845703125 5 Unmodified _QYLLVTALY_ ENSG00000165389|ENST00000298130|SPTSSA 36.12702656103203 0.08312389501731911 2 TA{I|L}Y 4 5 59.438 0 0 5.4903 0 0 616.3596200321456 0 616.3596200321456 0 51.99092531119419 0 0 0 2 0 0.75 0 + TA{I|L}Y 5.4903 + + 124 NaN NaN 148226.8 NaN 16744 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20847 85.071 NaN 259920 35 0 59508 0.261 + 31930 VYPADVVLF 9 45 511.7812788961928 1021.5480048591857 2 511.78143310546875 MULTI HCD FTMS 0 0 0 20841 95406.7734375 0.5008740639218765 -7 0.19239044189453125 6 Unmodified _VYPADVVLF_ ENSG00000130717|ENST00000372215|UCK1;ENSG00000143179|ENST00000367879|UCK2;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-2|UCK1;nc|ENSG00000130717|Q9HA47-3|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 50.855029805455786 0.030374663808198754 2 [YV]D[PA]VV{I|L}{M(Oxidation (M))|F} 9 2 + 72.33 0 0 7.0804 7.0804 92.475 0 0 0 18.55697099291227 65.33986249165785 18.55697099291227 14.542425094393252 0 2.4247425010840047 1.3979400086720375 0 0 [YV]D[PA]VV{I|L}{M(Oxidation (M))|F};[YV]DV[PA]V{I|L}{M(Oxidation (M))|F} 7.0804;5.6568 -;- 78 NaN NaN 142063.6 NaN 16745 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20848 85.074 NaN 173960 35 0 19432 0.261 + 22664 QWPEGLKFLF 10 54 632.8396308169985 1263.6647087007968 2 633.3411865234375 MULTI HCD FTMS 0 0 0 20841 47180.05078125 0.5227430424813094 3 -0.07175445556640625 7 Unmodified _QWPEGLKFLF_ ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-2|IPO5;nc|ENSG00000065150|O00410-3|IPO5 45.69961567697781 0.09594615698576985 2 [WQ]KK{I|L} 5 6 17.364 0 0 1.3741 0 0 0 577.2086886041624 577.2086886041624 2.965978039238733 0 0 0 0 0.3807196863200844 1.3979400086720375 0 0 [WQ]KK{I|L} 1.3741 - 55 + NaN NaN 117027.8 NaN 16746 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20849 85.077 NaN 562930 35 0 51129 0.261 -1 0 92 582.7996826233004 1163.5848123134008 2 582.80029296875 MULTI HCD FTMS 0 0 0 20841 84321.0234375 0.028204062692903396 -9 0.23456573486328125 8 NaN NaN 2 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 59.363 0 0 5.1018 0 0 0 162.0478699516356 162.0478699516356 17.208610898055795 0 0 0 0 1.5317183090963749 1.3979400086720375 1.341129063296272 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 5.1018 - 1067 NaN NaN 177013.3 NaN 16747 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20850 85.081 NaN 139940 35 0 6710.4 0.261 -1 MAISFLTTL 9 57 506.7711751359431 1011.5277973386862 2 506.77154541015625 MULTI HCD FTMS 0 0 0 20841 60692.0390625 0.936756087946715 -5 0.143768310546875 9 Oxidation (M) _M(Oxidation (M))AISFLTTL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 19.256988751693697 0.19398022840297344 2 M{I|L}{I|L} 3 -1 36.198 0 0 3.5785 0 0 636.3108657040033 0 636.3108657040033 0 28.411290632962718 0 0 0 1 0 0 0 M{I|L}{I|L} 3.5785 - 32 NaN NaN 124561.1 NaN 16748 4100 20841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20852 85.085 NaN 319890 35 0 20454 0.327 + 9560 HRLKMLTF 8 79 523.3032458694933 1044.5919388057864 2 523.3038330078125 MULTI HCD FTMS 0 0 0 20851 140482.140625 0.8279119325637464 -5 0.1371002197265625 1 Unmodified _HRLKMLTF_ REV__ENSG00000124357|ENST00000244204|NAGK;REV__ENST00000437460.1_1_2:71405726-71405900:+|nuORF;REV__ENST00000498022.1_1_2:71304672-71305635:+|nuORF;REV__nc|ENSG00000124357|Q9UJ70-2|NAGK 9.347437153973935 0.5250182646323369 2 {I|L}T{M(Oxidation (M))|F} 3 -1 28.812 0 0 2.7582 0 0 665.3826930555896 0 665.3826930555896 0 3.406206186877938 0 0 0 0 0 0.2614393726401688 0 {I|L}T{M(Oxidation (M))|F} 2.7582 + + 174 + NaN NaN 146373.7 NaN 16749 4101 20851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20853 85.09 NaN 804690 35 0 78679 0.261 -1 0 96 582.7996826233004 1163.5848123134008 2 582.8019409179688 MULTI HCD FTMS 0 0 0 20851 267304.375 0.08940913005136174 -8 0.22515106201171875 2 NaN NaN 2 [{I|L}T]PT{M(Oxidation (M))|F}WT{I|L} 8 -1 66.283 0 0 5.6964 0 0 0 201.05259543656567 201.05259543656567 14.474738999167641 0 0 0 0 0 1.5228787452803376 1.7689301784845295 0 [{I|L}T]PT{M(Oxidation (M))|F}WT{I|L} 5.6964 - 1821 NaN NaN 209756.4 NaN 16750 4101 20851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20854 85.093 NaN 194960 35 0 28104 0.261 -1 CRCRCHCHC 9 44 617.7170102818815 1233.4194676305628 2 617.7167358398438 MULTI HCD FTMS 0 0 0 20851 37305.078125 0.7944601666418903 1 -0.0162200927734375 3 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))RC(Carbamidomethyl (C))RCHCHC_ ENST00000358901.10_1_9:35072401-35072665:-|nuORF 0.6014990680409731 0.3464572424761564 2 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.32263 0 0 164.91087495653784 905.4815157525999 1070.3923907091378 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.32263 + + 9 + NaN NaN 141744.5 NaN 16751 4101 20851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20855 85.097 NaN 141480 35 0 33801 0.264 + -1 SSSGMGLVF 9 33 450.7103793301152 899.4062057270304 2 450.71044921875 MULTI HCD FTMS 0 0 0 20851 27346.984375 0.5147539715557069 -11 0.2867431640625 4 Oxidation (M) _SSSGM(Oxidation (M))GLVF_ REV__ENSG00000149571|ENST00000525144|KIRREL3 7.910154910731844 0.2910521888787154 2 V{M(Oxidation (M))|F} 2 -1 30.217 0 0 3.3596 0 0 635.2553578107437 0 635.2553578107437 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 V{M(Oxidation (M))|F} 3.3596 + + 10 NaN NaN 126527.5 NaN 16752 4101 20851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20857 85.102 NaN 1503700 35 0 113510 0.326 + 22725 QYDGIFYEF 9 101 591.2610569186636 1180.507560904127 2 591.26123046875 MULTI HCD FTMS 0 0 0 20856 521345.28125 0.9715011445080269 2 -0.04227447509765625 1 Unmodified _QYDGIFYEF_ ENSG00000136783|ENST00000374767|NIPSNAP3A 110.6747026088012 0.0028322563155251486 2 {NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 4 + 85.4 0 0 7.2342 7.2342 88.221 0 0 0 12.15251067971289 31.34919141103306 12.15251067971289 5.216525140920609 0 2.1549471895720984 1.5228787452803376 1.350576203518622 1.372363747448347 {NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YG[AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[AG][YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]VGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YE]NAV{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][TA]Q{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[YQ]DAV{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[Q{I|L}]D[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}YAV{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 7.2342;6.7923;6.4541;6.0122;5.9285;5.6259;5.5925;5.42;5.3375;5.2888 -;-;-;-;-;-;-;-;-;- 10681 NaN NaN 332683.3 NaN 16753 4102 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20858 85.106 NaN 888570 35 0 95378 0.261 -1 0 88 582.7996826233004 1163.5848123134008 2 582.7996826171875 MULTI HCD FTMS 0 0 0 20856 499107.625 0.16694368939248108 -7 0.1927490234375 2 NaN NaN 2 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 65.37 0 0 5.618 0 0 0 162.0531236631978 162.0531236631978 38.54786736677495 0 0 0 0 1.8371804965004639 1.2218487496163564 1.4489700043360187 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 5.618 - 1074 NaN NaN 234301.1 NaN 16754 4102 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20859 85.11 NaN 258320 35 0 28301 0.261 + 13606 KYPENFFLL 9 61 585.8129910707257 1169.6114292082514 2 585.8128051757812 MULTI HCD FTMS 0 0 0 20856 137156.390625 0.4611219150880953 20 -0.4561004638671875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 40.23920728925047 0.06424668180817725 2 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 5 48.8 0 0 4.1723 0 0 475.20762831855626 0 475.20762831855626 0 29.61294919925741 0 0 0 1.305462187404089 0 0 0.3807196863200844 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.1723 - 735 NaN NaN 131942.8 NaN 16755 4102 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20860 85.113 NaN 380580 35 0 40121 0.261 -1 FPIDDVFVGM 10 88 578.2725242172125 1154.530495501225 2 578.2722778320312 MULTI HCD FTMS 0 0 0 20856 114533.875 0.40464640455896317 13 -0.2996368408203125 4 Oxidation (M) _FPIDDVFVGM(Oxidation (M))_ ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4 30.636539890814138 0.2266618088935899 2 [{I|L}T]PEDM{M(Oxidation (M))|F}VG{M(Oxidation (M))|F} 10 -1 + 61.674 0 0 5.3419 5.3419 85.035 0 0 0 2.4029530315658576 32.19151233673003 2.4029530315658576 5.440680443502757 0 2.024227503252014 0 0.3807196863200844 0 [{I|L}T]PEDM{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[{I|L}P]TEDM{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[{I|L}T]PTYY{[HG]|PP}G{M(Oxidation (M))|F};[{I|L}P][PS][YE]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[{I|L}P]TTYY{[HG]|PP}G{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}[RN]{M(Oxidation (M))|F}VG{M(Oxidation (M))|F};[{I|L}P][PS]{M(Oxidation (M))|F}[YE]VG{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}{[HG]|PP}VG{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}V{[HG]|PP}G{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[MG]|[TS]}YYTP[VP] 5.3419;4.8707;3.982;3.6179;3.5107;3.2831;2.9241;2.4414;2.0735;1.1608 -;-;-;-;-;-;-;-;-;- 1054 NaN NaN 164422.6 NaN 16756 4102 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20861 85.116 NaN 88778 35 0 5779.5 0.263 + 23918 RTLGRNVP 8 57 456.77217067976625 911.5297884263325 2 456.7720947265625 MULTI HCD FTMS 0 0 0 20856 69629.140625 0.05987601189279714 12 -0.28678131103515625 5 Unmodified _RTLGRNVP_ ENSG00000111752|ENST00000544916|PHC1;ENST00000433847.2_1_12:9067399-9086462:+|nuORF 2.577480529830294 0.5381683276125971 2 W 1 8 13.099 0 0 1.437 0 0 707.4408124515263 0 707.4408124515263 0 6.187718690714376 0 0 0 0 0 0 0 W 1.437 - 21 + NaN NaN 107168.4 NaN 16757 4102 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20862 85.12 NaN 220560 35 0 17858 0.261 + 27783 TAVIWEPVL 9 59 514.2940958945037 1026.5736388558073 2 514.29443359375 MULTI HCD FTMS 0 0 0 20856 57481.1015625 0.9516610651967637 -1 0.0162200927734375 6 Unmodified _TAVIWEPVL_ ENSG00000262246|ENST00000251166|CORO7;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000574849.1_1_16:4407825-4408472:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4407825-4408182:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-3|CORO7;nc|ENSG00000262246|P57737-4|CORO7 36.12702656103203 0.08312389501731911 2 {I|L}WE[VP]{I|L} 6 3 40.195 0 0 3.9154 0 0 271.1523609845719 0 271.1523609845719 0 24.710084362531575 0 0 0 1.805462187404089 0 0 0 + {I|L}WE[VP]{I|L} 3.9154 + + 141 NaN NaN 129836.4 NaN 16758 4102 20856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20864 85.124 NaN 641540 35 0 232910 0.327 -1 0 84 562.3436428476501 1122.6727327621002 2 562.343994140625 MULTI HCD FTMS 0 0 0 20863 147527.828125 0.32490084478931885 -9 0.2383575439453125 1 NaN NaN 2 {M(Oxidation (M))|F}H 2 -1 7.0783 0 0 0.63049 0 0 644.4308026857315 191.0924471490844 835.5232498348158 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}H 0.63049 - 79 + NaN NaN 188548.8 NaN 16759 4103 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20865 85.129 NaN 191820 35 0 50023 0.261 + 5994 FPDQVQDLVF 10 34 604.3031047907117 1206.5916566482233 2 604.3031005859375 MULTI HCD FTMS 0 0 0 20863 112866.6484375 0.4309809641359001 -9 0.2383575439453125 2 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 7.101721422024254 0.4377131641736035 2 V{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1523 0 0 942.4464196476019 0 942.4464196476019 0 25 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.1523 + + 5 NaN NaN 119368.2 NaN 16760 4103 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20866 85.132 NaN 356290 35 0 54596 0.261 + 3985 EREVLWPEE 9 64 593.79137533656 1185.56819773992 2 593.7923583984375 MULTI HCD FTMS 0 0 0 20863 73473.40625 0.16117705401001745 -6 0.1500244140625 3 Unmodified _EREVLWPEE_ REV__ENSG00000256223|ENST00000248211|ZNF10 18.1463463914782 0.20357593197100715 2 VWSDVT 6 -1 61.631 0 0 5.1984 0 0 0 495.2225115830554 495.2225115830554 33.672137691284405 0 0 0 0 0.9247425010840047 1.3979400086720375 0.4247425010840047 0 VWSDVT 5.1984 - 109 + NaN NaN 150861.6 NaN 16761 4103 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20867 85.136 NaN 212400 35 0 23582 0.261 + 15108 LMIPTELQL 9 54 529.3017346157284 1056.5889162982567 2 529.302490234375 MULTI HCD FTMS 0 0 0 20863 76416.328125 0.7914719704154752 -4 0.09455108642578125 4 Unmodified _LMIPTELQL_ REV__tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1 10.073929032068715 0.27331982688540024 2 Q{I|L} 2 -1 25.969 0 0 2.4578 0 0 797.4351330012968 0 797.4351330012968 0 9.593924877592311 0 0 0 0.5 0 0 0 Q{I|L} 2.4578 + + 171 NaN NaN 116837.7 NaN 16762 4103 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20868 85.139 NaN 67089 35 0 17298 0.261 -1 PPEMVGMI 8 27 453.20948929292075 NaN 0 453.209228515625 PEAK HCD FTMS 0 0 0 20863 18380.3515625 0.5048493376586382 12 -0.27686309814453125 5 2 Oxidation (M) _PPEM(Oxidation (M))VGM(Oxidation (M))I_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102887.6 NaN 16763 4103 20863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20870 85.144 NaN 3248800 35 0 572230 0.327 + 27284 SYQDFFEAI 9 91 560.2535123543116 1118.4924717754232 2 560.25390625 MULTI HCD FTMS 0 0 0 20869 2020464.125 0.8326564230868138 2 -0.055572509765625 1 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 140.63315402491853 1.8728231636916273E-05 2 {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 9 0 + 93.783 0 0 8.3848 8.3848 93.625 0 0 0 3.2568864632742844 58.086681479559196 3.2568864632742844 10.325834421237516 0 2.6861818737241734 0 1.9604093769761874 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[SA]|[TG]}[YG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[SA]|[TG]}[YG]D{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]DE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[SA]|[TG]}[YG]DE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[MT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L} 8.3848;7.4616;7.2491;6.5797;6.3263;6.0351;5.3657;4.9392;4.2698;3.3163 +;-;-;-;-;-;-;-;-;- + 1212 NaN NaN 586352.2 NaN 16764 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20871 85.148 NaN 1308000 35 0 48852 0.261 -1 0 116 553.8300991066263 1105.6456452800526 2 553.8305053710938 MULTI HCD FTMS 0 0 0 20869 910975.375 0.40534147494000916 22 -0.5385589599609375 2 NaN NaN 2 D 1 -1 10.089 0 0 0.91247 0 0 105.07977584564192 882.4911592070044 987.5709350526464 0 0 0 0 0 0.3494850021680094 0 0.3494850021680094 0 D 0.91247 - 289 + NaN NaN 294051.2 NaN 16765 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20872 85.152 NaN 749190 35 0 97007 0.261 + 4979 FAVTLETVL 9 63 496.7866521712995 991.5587514093991 2 496.7868347167969 MULTI HCD FTMS 0 0 0 20869 216775.8125 0.4116177988071863 1 -0.03603363037109375 3 Unmodified _FAVTLETVL_ ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2 112.59319219568356 0.00251905749371435 2 {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L} 9 0 + 77.942 0 0 7.8606 7.8606 92.631 0 0 0 3.65279269351241 35.571968632008435 3.65279269351241 9.47621246364342 0 2.2302046884880937 0 1.579689690656103 0 + + {[MS]|[{M(Oxidation (M))|F}A]}VT{I|L}ETV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}V{I|L}TETV{I|L};{[TV]|[{I|L}S]}{[QN]|[E{I|L}]|[KN]}[{I|L}T]V{[MS]|[{M(Oxidation (M))|F}A]} 7.8606;6.9049;0.44203 +;-;- + 1101 NaN NaN 207870.8 NaN 16766 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20873 85.155 NaN 2300700 35 0 142000 0.261 + 22726 QYDGIFYEF 9 111 591.2610569186636 1180.507560904127 2 591.27685546875 MULTI HCD FTMS 0 0 0 20869 261142.734375 0.4866265687050719 4 -0.11771392822265625 4 Unmodified _QYDGIFYEF_ ENSG00000136783|ENST00000374767|NIPSNAP3A 71.92227651296345 0.008466197542043549 2 {NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 4 + 68.537 0 0 5.8058 5.8058 84.113 0 0 0 7.452668597150073 2.048066939218174 2.048066939218174 1.1709124234504031 0 2.004432191740108 1.6989700043360187 1.2769763493273798 0.9436726795685343 {NN|[MP]|[D{I|L}]|[EV]}YGQ{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YG[AG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[AG][YG]{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YGQPNVE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q[YG]PNVE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}E{[DS]|[MA]|[CV]|TT}{[ET]|[MV]}PE{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[DN]T[KC]PE{M(Oxidation (M))|F};MDQ{I|L}CC{[HG]|PP}K{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Q{[DS]|[MA]|[CV]|TT}[KC]PE{M(Oxidation (M))|F} 5.8058;5.7066;5.0257;4.9266;4.6876;4.5884;4.5116;4.4997;4.4354;4.4057 -;-;-;-;-;-;-;-;-;- 8966 NaN NaN 436487.5 NaN 16767 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20874 85.158 NaN 1237300 35 0 74053 0.261 -1 0 119 567.3307994004714 1132.6470458677427 2 567.3311157226562 MULTI HCD FTMS 0 0 0 20869 457812.25 0.2491720001409651 29 -0.7214584350585938 5 NaN NaN 2 [{M(Oxidation (M))|F}E][HQ]NP{M(Oxidation (M))|F}T 8 -1 19.403 0 0 1.713 0 0 0 129.20457340248495 129.20457340248495 3.160364270168813 0 0 0 0 0 0 1.0941876774005248 0.3054621874040891 [{M(Oxidation (M))|F}E][HQ]NP{M(Oxidation (M))|F}T 1.713 - 1447 NaN NaN 280123.4 NaN 16768 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20875 85.162 NaN 516340 35 0 81684 0.261 + 26831 SYIELPAYL 9 66 534.784085143605 1067.55361735401 2 534.7844848632812 MULTI HCD FTMS 0 0 0 20869 205532.609375 0.6555762184795716 4 -0.11771392822265625 6 Unmodified _SYIELPAYL_ ENSG00000162511|ENST00000294507|LAPTM5 78.14939416004806 0.006451203201226903 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PAY{I|L} 9 0 + 66.794 0 0 6.2567 6.2567 92.003 0 0 0 4.137342758552691 43.3379001364149 4.137342758552691 21.63811573052314 0 2.0994850021680094 0 0.6747425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PAY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}PS{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V{I|L}E[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]EAY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}V[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E{I|L}[{M(Oxidation (M))|F}T][VP];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[VP];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}V{I|L}[DP][YV];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{I|L}{[{M(Oxidation (M))|F}C]|[YS]}{I|L} 6.2567;4.2298;3.4967;3.4237;3.1694;2.6053;2.2779;2.2779;1.9984 +;-;-;-;-;-;-;-;- + 573 NaN NaN 167268.5 NaN 16769 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20876 85.165 NaN 539960 35 0 28668 0.261 -1 DLCHSHCDE 9 94 586.7084856696722 1171.4024184061443 2 586.709228515625 MULTI HCD FTMS 0 0 0 20869 101363.40625 0.6042475037942104 1 -0.03603363037109375 7 2 Carbamidomethyl (C) _DLC(Carbamidomethyl (C))HSHC(Carbamidomethyl (C))DE_ ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-3|RGS22 4.3292370932331545 0.3181982124262546 2 WN[NG]HNW{I|L} 8 -1 24.249 0 0 2.0701 0 0 131.97001662462372 0 131.97001662462372 0 5.571720435366654 0 0 0 0.21346799108044046 0 0 0.7984550065040281 WN[NG]HNW{I|L} 2.0701 - 977 + NaN NaN 166213.5 NaN 16770 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20877 85.168 NaN 973890 35 0 80827 0.261 + 10932 IYARLFDWL 9 104 598.8260511585848 1195.6375493839696 2 598.844970703125 MULTI HCD FTMS 0 0 0 20869 48086.19140625 0.2762746089579111 -3 0.05849456787109375 8 Unmodified _IYARLFDWL_ ENSG00000278259|ENST00000614623|MYO19;MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant;nc|ENSG00000278259|Q96H55-3|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19 27.628801355627647 0.12213550946336599 2 [Y{I|L}]{[TV]|[{I|L}S]}TSVD[VS]{I|L} 11 7 + 40.092 0 0 3.3532 3.3532 81.34 0 0 0 2.216047874249398 5.461489095031389 2.216047874249398 2.216047874249398 0 0.8829131673969606 1.2218487496163564 0.5866968715561641 0 [Y{I|L}]{[TV]|[{I|L}S]}TSVD[VS]{I|L};[{M(Oxidation (M))|F}T]R{I|L}{M(Oxidation (M))|F}VDW{I|L};[{M(Oxidation (M))|F}T]R{I|L}V{M(Oxidation (M))|F}DW{I|L};[Y{I|L}][RV]{M(Oxidation (M))|F}{[CP]|[EA]}W{I|L};{[TV]|[{I|L}S]}[Y{I|L}]TSVD[VS]{I|L};[{M(Oxidation (M))|F}T]R{I|L}{M(Oxidation (M))|F}VDN[KG];[Y{I|L}][RV]{M(Oxidation (M))|F}{I|L}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[{M(Oxidation (M))|F}T]R{I|L}V{M(Oxidation (M))|F}DN[KG];[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}[QA][WK];[Y{I|L}]Q{I|L}{M(Oxidation (M))|F}QQ{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3.3532;3.1678;2.5925;2.2183;2.1568;1.6424;1.3688;1.067;0.9556;0.9071 -;-;-;-;-;-;-;-;-;- 1989 NaN NaN 242734.6 NaN 16771 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20878 85.172 NaN 202250 35 0 17730 0.261 + 33065 YDIDIVAIY 9 57 542.7802979261472 1083.5460429190944 2 542.78076171875 MULTI HCD FTMS 0 0 0 20869 41327.4375 0.33167836244219906 -3 0.05849456787109375 9 Unmodified _YDIDIVAIY_ tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1 9.347437153973935 0.2795965555214564 2 {I|L}NS{M(Oxidation (M))|F} 4 8 28.704 0 0 2.6491 0 0 604.3080511577085 0 604.3080511577085 0 4.291746928241125 0 0 0 0.3494850021680094 0 0.3807196863200844 0 {I|L}NS{M(Oxidation (M))|F} 2.6491 - 311 + NaN NaN 123205.2 NaN 16772 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20879 85.175 NaN 199500 35 0 32495 0.261 + 4948 FARPQPLW 8 65 507.7777225641489 1013.5408921950979 2 507.7776794433594 MULTI HCD FTMS 0 0 0 20869 33172.2578125 0.43722946352996417 2 -0.055572509765625 10 Unmodified _FARPQPLW_ ENST00000367602.7_1_1:180168067-180168433:+|nuORF 19.438996006549623 0.45076845602799126 2 TVAE 4 8 31.402 0 0 3.0983 0 0 595.3204212873062 0 595.3204212873062 0 3.2023004737948924 0 0 0 0.6989700043360187 0 0 0 TVAE 3.0983 - 113 NaN NaN 118389.5 NaN 16773 4104 20869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20881 85.18 NaN 1133300 35 0 80739 0.327 + 16467 LSSYGDPLPFT 11 101 598.7952515707242 1195.5759502082483 2 598.79541015625 MULTI HCD FTMS 0 0 0 20880 228916.75 0.632345696383537 -2 0.05553436279296875 1 Unmodified _LSSYGDPLPFT_ REV__ENSG00000110344|ENST00000252108|UBE4A;REV__nc|ENSG00000110344|Q14139-2|UBE4A 21.536976647645854 0.2694300281126922 2 [WD]{I|L}CTTTQD 9 -1 60.235 0 0 5.0382 0 0 0 129.1286641476053 129.1286641476053 34.71436920751715 0 0 0 0 1.3182503180159344 1.6989700043360187 1.3243923658886185 0.3252574989159953 [WD]{I|L}CTTTQD 5.0382 - 2368 NaN NaN 258014.1 NaN 16774 4105 20880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20882 85.184 NaN 586740 35 0 48979 0.261 + 22903 QYPVIIHLIW 10 79 641.3712104567475 1280.7278679802948 2 641.3720092773438 MULTI HCD FTMS 0 0 0 20880 156751.15625 0.7448582919779904 -2 0.05553436279296875 2 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 81.86404211737425 0.003527499127738669 2 [YQ]PV{I|L}{I|L}H{I|L}{I|L}W 10 0 + 73.058 0 0 5.7044 5.7044 89.01 0 0 0 9.845817397824597 9.845817397824597 9.845817397824597 9.845817397824597 0 1.3494850021680094 1.5228787452803376 0 0 + + [YQ]PV{I|L}{I|L}H{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}SPV{I|L}{I|L}H{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}H{I|L}{I|L}VR[DV];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}H{I|L}{I|L}[WP][VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}H{I|L}[WP]{I|L}[VS] 5.7044;4.9356;2.9392;2.3222;2.1459 +;-;-;-;- + 396 + NaN NaN 182435.6 NaN 16775 4105 20880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20883 85.188 NaN 106910 35 0 5483.4 0.264 + 14116 LAAAVNRH 8 55 426.245758342899 850.4769637525981 2 426.245849609375 MULTI HCD FTMS 0 0 0 20880 81547.9765625 0.7335354335063469 -2 0.05553436279296875 3 Unmodified _LAAAVNRH_ REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF;REV__ENST00000443233.5_1_7:107204485-107205092:+|nuORF 2.577480529830294 0.5381683276125971 2 {[{M(Oxidation (M))|F}H]|[RQ]}P 3 -1 8.9524 0 0 1.0526 0 0 0 466.2413735028512 466.2413735028512 0 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}H]|[RQ]}P 1.0526 - 11 NaN NaN 101468.3 NaN 16776 4105 20880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20884 85.191 NaN 345080 35 0 79175 0.262 + 4462 EYILALNEL 9 55 539.2950424544855 1076.575531975771 2 539.2954711914062 MULTI HCD FTMS 0 0 0 20880 101976.765625 0.790734354071032 -2 0.05553436279296875 4 Unmodified _EYILALNEL_ ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP 34.93206674587334 0.08860942999206235 2 {I|L}A{I|L}[C(Carbamidomethyl (C))N]{I|L} 6 4 28.751 0 0 2.6706 0 0 374.17955315082634 0 374.17955315082634 0 14.146811158216916 0 0 0 1.2887254899964358 0 0 0 {I|L}A{I|L}[C(Carbamidomethyl (C))N]{I|L} 2.6706 - 42 NaN NaN 140330.3 NaN 16777 4105 20880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20885 85.195 NaN 75347 35 0 6497.9 0.261 + 4621 EYLYFFRVL 9 42 625.3341681839585 1248.6537834347168 2 625.3341674804688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EYLYFFRVL_ ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF 24.020572477871973 0.15282392193088168 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 20.445 0 0 1.6374 0 0 405.1888308974106 383.24042688541255 788.4292577828231 0 0 0 0 0 0.4247425010840047 0 0 0 + Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6374 + + 17 + NaN NaN 108546.2 NaN 16778 4105 20880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20887 85.199 NaN 1515400 35 0 59479 0.327 + 16428 LSLTLVNSSR 10 121 545.3169038290621 1088.619254724924 2 545.317138671875 MULTI HCD FTMS 0 0 0 20886 1991953.25 0.4828313902064856 24 -0.5841522216796875 1 Unmodified _LSLTLVNSSR_ REV__ENSG00000106346|ENST00000306177|USP42;REV__ENST00000479544.6_1_7:6150764-6196715:+|nuORF;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;REV__nc|ENSG00000106346|Q9H9J4|USP42 8.745405648335112 0.42901288225909884 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.1014 0 0 923.5405021387897 0 923.5405021387897 0 0.025749891599531338 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1014 - 259 + NaN NaN 316204.7 NaN 16779 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20888 85.204 NaN 1499100 35 0 206100 0.261 + 3939 EPVYIDLTL 9 92 531.7894604730898 1061.5643680129795 2 531.789794921875 MULTI HCD FTMS 0 0 0 20886 776203.1875 0.8143577837693295 -3 0.0750732421875 2 Unmodified _EPVYIDLTL_ ENSG00000163811|ENST00000407426|WDR43 164.5152109175784 6.8106583686994766E-09 2 [EP]VY{I|L}D{I|L}T{I|L} 9 0 + 62.836 0 0 5.9192 5.9192 85.612 0 0 0 9.33172898948277 8.45082039834081 8.45082039834081 4.366903183326514 0 2.3243923658886185 0 2.2302046884880937 0 + + [EP]VY{I|L}D{I|L}T{I|L};[{I|L}T]D{I|L}{I|L}Y[DP]{I|L};[{I|L}T]D{I|L}Y{I|L}[DP]{I|L};[YV][EP]{I|L}D{I|L}T{I|L};[{I|L}T]D{I|L}{I|L}YV[EP];[{I|L}T]D{I|L}Y{I|L}V[EP];[YV][EP]{I|L}VET{I|L};[YV][EP]VE{I|L}T{I|L};[YV][EP]V{I|L}ET{I|L};[YV][EP]{I|L}{[QN]|[E{I|L}]|[KN]}S{I|L} 5.9192;5.5079;5.2736;5.1053;4.8242;4.5899;4.0708;3.6671;2.6326;1.6556 +;-;-;-;-;-;-;-;-;- + 888 + NaN NaN 327871 NaN 16780 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20889 85.207 NaN 1305100 35 0 99284 0.261 -1 0 117 566.7643568030153 1131.5141606728305 2 566.7645263671875 MULTI HCD FTMS 0 0 0 20886 754324.75 0.7435402562384534 -3 0.0750732421875 3 NaN NaN 2 [YE]{M(Oxidation (M))|F}TDP{M(Oxidation (M))|F}T 8 -1 58.3 0 0 5.1524 0 0 0 128.07314899334918 128.07314899334918 31.17223679987827 0 0 0 0 1.9604093769761874 1 2.146591250700361 0 [YE]{M(Oxidation (M))|F}TDP{M(Oxidation (M))|F}T 5.1524 - 1781 NaN NaN 291053.3 NaN 16781 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20890 85.211 NaN 361510 35 0 85041 0.261 + 28414 TPFLYDLVM 9 74 557.7778956018665 1113.5412382705329 2 557.7776489257812 MULTI HCD FTMS 0 0 0 20886 174750.65625 0.20375028092073794 13 -0.29970550537109375 4 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 42.09456458481378 0.05572955244001856 2 PYD{I|L}V{M(Oxidation (M))|F} 6 3 46.357 0 0 4.163 0 0 361.19944960761876 0 361.19944960761876 0 22.940228147639203 0 0 0 1.718765315847925 0 0.7742275032520141 0 PYD{I|L}V{M(Oxidation (M))|F} 4.163 - 435 NaN NaN 145852.6 NaN 16782 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20891 85.214 NaN 267240 35 0 8348.5 0.261 + 8081 GILWRVLFF 9 87 575.8419496470875 1149.669346360975 2 575.84228515625 MULTI HCD FTMS 0 0 0 20886 267746.59375 0.25429472088365573 40 -1.0199966430664062 5 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 5.230669730166228 0.3113646817964458 2 {M(Oxidation (M))|F}{I|L} 2 8 8.5835 0 0 0.74661 0 0 166.18871868101832 720.3017672174436 886.4904858984619 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 0.74661 - 142 + NaN NaN 131798 NaN 16783 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20892 85.217 NaN 446770 35 0 62709 0.261 + 19980 NYIDIVKYVF 10 53 637.3451616224884 1272.6757703117767 2 637.3452758789062 MULTI HCD FTMS 0 0 0 20886 191911.15625 0.5309490144624358 -3 0.0750732421875 6 Unmodified _NYIDIVKYVF_ ENSG00000162408|ENST00000377705|NOL9 55.24861242081279 0.058701489357514555 2 [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F} 10 0 + 97.74 0 0 7.6799 7.6799 94.88 0 0 0 27.314309196763702 97.25563154776665 27.314309196763702 25.555847141874892 0 2.6549471895720984 1.6989700043360187 0 0.3054621874040891 + + [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F};[YN]{I|L}D{I|L}V[YV]K{M(Oxidation (M))|F};[RH][YV]V{I|L}QQ[KC] 7.6799;5.6719;1.1367 +;-;- + 98 NaN NaN 172541.6 NaN 16784 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20893 85.221 NaN 328000 35 0 84567 0.263 + 31931 VYPADVVLF 9 41 511.7812788961928 1021.5480048591857 2 511.7816162109375 MULTI HCD FTMS 0 0 0 20886 176067.015625 0.9243306157550852 -1 0.01953887939453125 7 Unmodified _VYPADVVLF_ ENSG00000130717|ENST00000372215|UCK1;ENSG00000143179|ENST00000367879|UCK2;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-2|UCK1;nc|ENSG00000130717|Q9HA47-3|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 67.34385681178166 0.00994769994983633 2 [YV][PA]DVV{I|L}{M(Oxidation (M))|F} 9 0 + 74.135 0 0 7.2571 7.2571 87.769 0 0 0 3.8071968632008435 3.8071968632008435 3.8071968632008435 3.8071968632008435 0 2.3494850021680094 1.3979400086720375 0.3807196863200844 0 + + [YV][PA]DVV{I|L}{M(Oxidation (M))|F};[YV]D[PA]VV{I|L}{M(Oxidation (M))|F} 7.2571;6.8844 +;- + 104 + NaN NaN 151951.1 NaN 16785 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20894 85.224 NaN 439640 35 0 24768 0.261 + 23862 RSMLMTACDL 10 73 607.2715276187163 1212.5285023042325 2 607.2727661132812 MULTI HCD FTMS 0 0 0 20886 86209.2265625 0.5912350913107988 -1 0.01953887939453125 8 Carbamidomethyl (C),Oxidation (M) _RSMLM(Oxidation (M))TAC(Carbamidomethyl (C))DL_ ENSG00000128655|ENST00000286063|PDE11A;ENST00000478646.5_1_2:178494137-178540272:-|nuORF;nc|ENSG00000128655|Q9HCR9-2|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-4|PDE11A 49.55428908609986 0.07941048486997417 2 W{I|L}QD{I|L} 5 7 52.167 0 0 4.3023 0 0 539.1929188459 0 539.1929188459 0 41.90614065464281 0 0 0 1.7302046884880937 0 0.3807196863200844 0 W{I|L}QD{I|L} 4.3023 - 216 NaN NaN 166276.8 NaN 16786 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20895 85.227 NaN 145850 35 0 14961 0.261 -1 MPDYMILQEL 10 41 634.798581292156 1267.5826096511119 2 634.798828125 MULTI HCD FTMS 0 0 0 20886 39468.59375 0.6521924636358015 -5 0.11406707763671875 9 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 26.020703789607367 0.2677231329712098 2 {I|L}QE{I|L} 4 -1 46.186 0 0 3.6436 0 0 766.3037218677783 0 766.3037218677783 0 35.728050365394424 0 0 0 1.4247425010840047 0 0 0 {I|L}QE{I|L} 3.6436 + + 45 NaN NaN 119221.5 NaN 16787 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20896 85.231 NaN 154910 35 0 15094 0.261 + 30207 VIDEDGGDEYF 11 42 629.7610714242178 NaN 0 629.76171875 PEAK HCD FTMS 0 0 0 20886 29582.494140625 0.6070141702287012 -1 0.01953887939453125 10 Unmodified _VIDEDGGDEYF_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF;REV__ENST00000487086.1_1_20:1438843-1447469:-|nuORF;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 1.3295316138638542 0.3383486451652214 2 YE{M(Oxidation (M))|F} 3 -1 13.188 0 0 1.0487 0 0 166.08457477613393 649.2276095025999 815.3121842787339 0 0 0 0 0 0 0 0 0 YE{M(Oxidation (M))|F} 1.0487 - 14 + NaN NaN 106077.7 NaN 16788 4106 20886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20898 85.236 NaN 408650 35 0 19989 0.327 + 15224 LNVTKDRVT 9 102 523.3032458694933 1044.5919388057864 2 523.3037109375 MULTI HCD FTMS 0 0 0 20897 113533.4296875 0.6690934574671551 1 -0.0260772705078125 1 Unmodified _LNVTKDRVT_ REV__ENST00000476656.1_1_6:70589459-70599853:+|nuORF 6.2057823575117 0.30397260197431997 2 [YV][HA]{I|L}[TP]Y 8 -1 18.249 0 0 1.747 0 0 0 97.12330368311612 97.12330368311612 1.7956061064919062 0 0 0 0 0 2 0 0 [YV][HA]{I|L}[TP]Y 1.747 - 177 NaN NaN 147306.1 NaN 16789 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20899 85.24 NaN 306180 35 0 49704 0.261 -1 0 58 504.26489696473476 503.25762049813477 1 504.2651062011719 MULTI HCD FTMS 0 0 0 20897 99625.5078125 0.2536524614586279 9 -0.198486328125 2 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 17.078 0 0 3.3936 0 0 191.11078780157476 0 191.11078780157476 0 13.979400086720375 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3936 - 20 + NaN NaN 135682.1 NaN 16790 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20900 85.243 NaN 676170 35 0 85442 0.261 + 32213 VYTILTVQL 9 85 525.3156571336851 1048.6167613341702 2 525.3154907226562 MULTI HCD FTMS 0 0 0 20897 241443.015625 0.503773783222734 -2 0.05560302734375 3 Unmodified _VYTILTVQL_ ENSG00000082996|ENST00000392894|RNF13 103.41943736471063 0.004016698775839292 2 [YV]T{I|L}{I|L}TVQ{I|L} 9 0 + 82.662 0 0 7.8829 7.8829 91.852 0 0 0 0.7378621416091846 55.36683765109139 0.7378621416091846 9.208187539523749 0 2.5994850021680094 0 2.0114393726401687 0 + + [YV]T{I|L}{I|L}TVQ{I|L};[YV]T{I|L}{I|L}TV[AG]{I|L};[YV]T{I|L}T{I|L}VQ{I|L};[YV]T{I|L}T{I|L}V[AG]{I|L};[YV]T{I|L}{I|L}[{I|L}V][QT] 7.8829;7.0048;6.1818;5.3037;1.7377 +;-;-;-;- + 835 NaN NaN 204679.5 NaN 16791 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20901 85.247 NaN 510660 35 0 44911 0.261 -1 LYPVTVNMLF 10 84 606.8199952086104 1211.6254374840207 2 606.8206787109375 MULTI HCD FTMS 0 0 0 20897 54881.27734375 0.25424542010661594 7 -0.15287017822265625 4 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 22.736283301280096 0.29844449404982915 2 DC(Carbamidomethyl (C))SDD{I|L}Q{NN|[MP]|[D{I|L}]|[EV]} 9 -1 32.347 0 0 2.6697 0 0 132.2096997082536 0 132.2096997082536 0 8.524210894888618 0 0 0 0 0 1.0752574989159953 1.0501648626366045 DC(Carbamidomethyl (C))SDD{I|L}Q{NN|[MP]|[D{I|L}]|[EV]} 2.6697 - 716 + NaN NaN 171183.9 NaN 16792 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20902 85.25 NaN 303690 35 0 48295 0.261 + 21519 PYISNIYLI 9 62 548.3081285878604 1094.6017042425208 2 548.3079223632812 MULTI HCD FTMS 0 0 0 20897 37988.328125 0.02570213548882637 30 -0.7378463745117188 5 Unmodified _PYISNIYLI_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 25.399314129420986 0.14091189997036632 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DS{I|L} 8 4 45.131 0 0 4.123 0 0 0 161.10814890488328 161.10814890488328 15.477372199242296 0 0 0 0 0 1.5228787452803376 0.3807196863200844 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}E{I|L}DS{I|L} 4.123 - 611 NaN NaN 141551.7 NaN 16793 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20903 85.253 NaN 281420 35 0 27102 0.261 -1 ASAQCHENGTC 11 67 617.7329567632001 1233.4513605932002 2 617.7334594726562 MULTI HCD FTMS 0 0 0 20897 69976.7890625 1 0 0 6 2 Carbamidomethyl (C) _ASAQC(Carbamidomethyl (C))HENGTC(Carbamidomethyl (C))_ ENSG00000050555|ENST00000361069|LAMC3 2.0860074813731053 0.4097721463192591 2 ND 2 -1 14.949 0 0 1.2119 0 0 0 1001.330908559722 1001.330908559722 5.484550065040281 0 0 0 0 0 0 0 0 ND 1.2119 - 41 + NaN NaN 147907.9 NaN 16794 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20904 85.257 NaN 106930 35 0 14091 0.261 + -1 YNIKHFFMK 9 53 622.3170067745026 1242.619460615805 2 622.3182983398438 MULTI HCD FTMS 0 0 0 20897 30325.224609375 0.7292283886719447 -7 0.182891845703125 7 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 2 [YN]{I|L} 3 -1 39.705 0 0 3.1953 0 0 0 849.405325923557 849.405325923557 32.71529987308661 0 0 0 0 0.9247425010840047 2 0 0 [YN]{I|L} 3.1953 + + 27 + NaN NaN 116885 NaN 16795 4107 20897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20906 85.262 NaN 3427200 35 0 396030 0.327 -1 0 108 582.7996826233004 1163.5848123134008 2 582.800048828125 MULTI HCD FTMS 0 0 0 20905 2782760.5 0.9307898362916522 -1 0.0260772705078125 1 NaN NaN 2 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 70.794 0 0 6.0841 0 0 0 162.05494570055558 162.05494570055558 41.45960279308483 0 0 0 0 1.7984550065040281 1.3979400086720375 1.8539171939081172 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 6.0841 - 5385 NaN NaN 534951.9 NaN 16796 4108 20905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20907 85.266 NaN 782640 35 0 79283 0.261 + 19098 NFDNILNSF 9 92 542.2589812322379 1082.5034095312758 2 542.2590942382812 MULTI HCD FTMS 0 0 0 20905 227924.296875 0.48559928946862946 -4 0.11771392822265625 2 Unmodified _NFDNILNSF_ ENSG00000186815|ENST00000335509|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;nc|ENSG00000186815|Q9ULQ1-3|TPCN1 154.7525637096362 3.8021791163654463E-06 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DN{I|L}{I|L}NS{M(Oxidation (M))|F} 9 0 + 84.114 0 0 7.7703 7.7703 91.682 0 0 0 4.137342758552691 61.44569935735241 4.137342758552691 9.208187539523749 0 2.892159058960253 0 0.6549471895720984 1.3851518780601921 + + {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DN{I|L}{I|L}NS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DGG{I|L}{I|L}NS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DN{I|L}{I|L}GGS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DN{I|L}{I|L}SN{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DGG{I|L}{I|L}GGS{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DN{I|L}{I|L}SGG{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DGG{I|L}{I|L}SN{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DGG{I|L}{I|L}SGG{M(Oxidation (M))|F};[NS]QHH[WK]{M(Oxidation (M))|F};[NS]{M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[QA]{M(Oxidation (M))|F} 7.7703;6.9197;6.9197;6.7075;6.0731;5.8569;5.8569;5.0103;3.535;2.9063 +;-;-;-;-;-;-;-;-;- + 2012 NaN NaN 211429.6 NaN 16797 4108 20905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20908 85.27 NaN 439950 35 0 68591 0.261 + 34198 YPDLSELLM 9 86 548.7665982366932 1095.5186435401863 2 548.7656860351562 MULTI HCD FTMS 0 0 0 20905 92062.34375 0.5125697237808223 -4 0.11771392822265625 3 Oxidation (M) _YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 57.47134341890925 0.0211188941628804 2 [Y{I|L}]SDPE{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 59.72 0 0 5.4513 5.4513 84.601 0 0 0 9.208187539523749 32.83137116318585 9.208187539523749 3.7067430123794765 0 1.6989700043360187 1.0969100130080565 1.066901560044258 0 [Y{I|L}]SDPE{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PDSE{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PDKAEN{M(Oxidation (M))|F};[Y{I|L}]PQNDS{I|L}{M(Oxidation (M))|F};[Y{I|L}]PDKAEGG{M(Oxidation (M))|F};[MN]{I|L}C{I|L}RS{I|L}{M(Oxidation (M))|F};[Y{I|L}]S[RP]WQ{M(Oxidation (M))|F};[Y{I|L}]PDKD[QA]{M(Oxidation (M))|F};[MN]{I|L}[WC(Carbamidomethyl (C))]{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]SDPVG[QA]{M(Oxidation (M))|F} 5.4513;5.113;4.7836;4.4301;3.9431;3.7888;3.3442;3.3224;3.2324;2.7073 -;-;-;-;-;-;-;-;-;- 1423 NaN NaN 160727.4 NaN 16798 4108 20905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20909 85.273 NaN 389730 35 0 53390 0.261 + 31380 VYAEIMAVL 9 68 504.77495554376145 1007.5353581543229 2 504.7574157714844 MULTI HCD FTMS 0 0 0 20905 39060.4921875 0.5364142618426241 -1 0.0260772705078125 4 Unmodified _VYAEIMAVL_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 34.10243960390752 0.09241788333544565 2 {I|L}MAV{I|L} 5 4 42.149 0 0 4.1834 0 0 462.2119312970719 0 462.2119312970719 0 24.67518674737471 0 0 0 1.4436726795685342 0 0 0 + {I|L}MAV{I|L} 4.1834 + + 120 NaN NaN 157236 NaN 16799 4108 20905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20911 85.278 NaN 1090000 35 0 44081 0.327 -1 0 113 553.8300991066263 1105.6456452800526 2 553.8303833007812 MULTI HCD FTMS 0 0 0 20910 1155875.875 0.5143107540311654 27 -0.6662063598632812 1 NaN NaN 2 D 1 -1 7.3464 0 0 0.66444 0 0 61.053455701343246 926.5192094410197 987.572665142363 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.66444 - 147 + NaN NaN 248443 NaN 16800 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20912 85.282 NaN 1094700 35 0 192420 0.261 + 27285 SYQDFFEAI 9 71 560.2535123543116 1118.4924717754232 2 560.2537231445312 MULTI HCD FTMS 0 0 0 20910 809240.875 0.33349743955149086 7 -0.15631103515625 2 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 107.09958533191995 0.0034159042678574016 2 {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L} 9 0 + 84.478 0 0 7.5528 7.5528 91.276 0 0 0 3.2568864632742844 64.47289377609621 3.2568864632742844 9.208187539523749 0 2.6307196863200843 0 1.610924374808178 0 + + {[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QD{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]D{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}QDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[AG]DE{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[{I|L}V]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q[MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[YV]MT{[QD]|[EN]|[WG]|[KD]|[RS]};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[{I|L}V][HQ]P[MT] 7.5528;6.7296;6.3389;5.5156;5.2429;4.4197;0.92083;0.72248;0.27194 +;-;-;-;-;-;-;-;- + 660 NaN NaN 254027 NaN 16801 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20913 85.286 NaN 639760 35 0 105810 0.261 -1 VWSMMRFLT 9 79 593.79137533656 1185.56819773992 2 593.7916259765625 MULTI HCD FTMS 0 0 0 20910 455855.25 1 0 0 3 Oxidation (M) _VWSM(Oxidation (M))MRFLT_ ENSG00000133687|ENST00000539277|TMTC1;nc|ENSG00000133687|Q8IUR5-1|TMTC1 24.020572477871973 0.15282392193088168 2 VWSDVT 6 -1 75.359 0 0 6.3564 0 0 0 495.22231953068274 495.22231953068274 46.33568958453017 0 0 0 0 1.5941876774005248 1.6989700043360187 0.7302046884880937 0 VWSDVT 6.3564 - 261 + NaN NaN 186849.7 NaN 16802 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20914 85.289 NaN 375940 35 0 94446 0.261 + 5995 FPDQVQDLVF 10 44 604.3031047907117 1206.5916566482233 2 604.3037109375 MULTI HCD FTMS 0 0 0 20910 169146.515625 0.6458854709826741 -3 0.07823944091796875 4 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 15.738622578938676 0.3638982514236938 2 QD{I|L}V{M(Oxidation (M))|F} 5 5 50.701 0 0 4.202 0 0 586.2767376075833 0 586.2767376075833 0 50.3224716362703 0 0 0 1.274227503252014 0 0 0 + QD{I|L}V{M(Oxidation (M))|F} 4.202 + + 25 NaN NaN 150357 NaN 16803 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20915 85.292 NaN 607560 35 0 268460 0.261 + 820 AVKSRRPGPR 10 84 562.3436428476501 1122.6727327621002 2 562.34375 MULTI HCD FTMS 0 0 0 20910 253315.53125 0.5578773248911753 -3 0.07823944091796875 5 Unmodified _AVKSRRPGPR_ REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF 3.2813086475875832 0.45793521633868084 2 MA{M(Oxidation (M))|F} 3 -1 11.682 0 0 1.0406 0 0 132.27523483358613 638.2246187799436 770.4998536135297 0 0 0 0 0 0 0 0 0 MA{M(Oxidation (M))|F} 1.0406 - 84 + NaN NaN 192788.3 NaN 16804 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20916 85.296 NaN 297120 35 0 49730 0.263 + -1 TLVGCACQ 8 60 426.19119060502334 850.3678282768467 2 426.1913146972656 MULTI HCD FTMS 0 0 0 20910 149510.34375 0.23466977615307888 -7 0.17608642578125 6 Carbamidomethyl (C) _TLVGC(Carbamidomethyl (C))ACQ_ REV__ENSG00000126231|ENST00000375547|PROZ;REV__nc|ENSG00000126231|P22891-2|PROZ 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 5.4846 0 0 0.64496 0 0 172.1212205479 562.1390474908811 734.2602680387811 0 0 0 0 0 0 0 0 0 {I|L} 0.64496 + + 27 + NaN NaN 132080.8 NaN 16805 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20917 85.299 NaN 167160 35 0 20956 0.261 -1 0 53 529.3017346157284 1056.5889162982567 2 529.302490234375 MULTI HCD FTMS 0 0 0 20910 69064.2421875 0.7153237166797226 2 -0.045623779296875 7 NaN NaN 2 Q{I|L} 2 -1 25.969 0 0 2.4578 0 0 797.4349032075683 0 797.4349032075683 0 10.484550065040281 0 0 0 0.5 0 0 0 Q{I|L} 2.4578 - 54 NaN NaN 112351.5 NaN 16806 4109 20910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20919 85.304 NaN 2007200 35 0 138740 0.327 + 22527 QSCPDYIELN 10 110 591.2610569186636 1180.507560904127 2 591.2772827148438 MULTI HCD FTMS 0 0 0 20918 67275.6640625 0.1253648723501442 10 -0.208221435546875 1 Unmodified _QSCPDYIELN_ REV__ENSG00000111404|ENST00000538724|RERGL;REV__nc|ENSG00000111404|Q9H628|RERGL 22.736283301280096 0.29844449404982915 2 NQ{I|L}CC{I|L}Q{NN|[MP]|[D{I|L}]|[EV]} 9 -1 71.224 0 0 6.0333 0 0 132.06751033919255 0 132.06751033919255 0 19.266122067184234 0 0 0 0 0 2.284318117920506 1.8001648626366045 NQ{I|L}CC{I|L}Q{NN|[MP]|[D{I|L}]|[EV]} 6.0333 - 12922 + NaN NaN 408242 NaN 16807 4110 20918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20920 85.308 NaN 426770 35 0 17681 0.261 -1 0 83 556.3078005357436 555.3005240691435 1 556.308349609375 MULTI HCD FTMS 0 0 0 20918 145391.53125 0.678820183587434 -10 0.251190185546875 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 2.6299 0 0 390.2218325181654 0 390.2218325181654 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.6299 - 37 + NaN NaN 156652.8 NaN 16808 4110 20918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20921 85.312 NaN 300860 35 0 21497 0.261 -1 REMAQMYQM 9 71 602.2516610284234 NaN 0 602.2670288085938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _REMAQM(Oxidation (M))YQM_ ENSG00000122367|ENST00000361373|LDB3;nc|ENSG00000122367|O75112-4|LDB3;nc|ENSG00000122367|O75112-5|LDB3;nc|ENSG00000122367|O75112-7|LDB3 10.823927491677226 0.2427956001690155 2 ETEW{I|L}Q 6 -1 34.513 0 0 2.8702 0 0 148.02246823989418 265.0802096002563 413.1026778401505 0 0 0 0 0 0 0 0.4247425010840047 0 ETEW{I|L}Q 2.8702 - 291 + NaN NaN 133137.2 NaN 16809 4110 20918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20922 85.315 NaN 95071 35 0 5147.4 0.261 + 11381 IYNSQLNIWI 10 41 632.3402968091547 NaN 0 632.3400268554688 PEAK HCD FTMS 0 0 0 20918 17827.326171875 0.34065479113544267 1 -0.019500732421875 4 Unmodified _IYNSQLNIWI_ ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 14.405379775768559 0.3259538031337542 2 W{I|L}N 3 8 29.253 0 0 2.3167 0 0 131.09336109702173 715.3413179986936 846.4346790957154 0 0 0 0 0 0.9247425010840047 0 0 0.3807196863200844 W{I|L}N 2.3167 - 10 + NaN NaN 114956 NaN 16810 4110 20918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20923 85.318 NaN 60956 35 0 11565 0.264 -1 EWLRGSFLDSM 11 47 452.8805127512638 NaN 0 452.8697204589844 PEAK HCD FTMS 0 0 0 20918 23177.544921875 1 0 0 5 Oxidation (M) _EWLRGSFLDSM(Oxidation (M))_ ENSG00000267221|ENST00000587304|C17orf113 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107448.7 NaN 16811 4110 20918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20925 85.323 NaN 950280 35 0 94291 0.327 + 115 ADSEGFIPLTF 11 103 598.7952515707242 1195.5759502082483 2 598.7955932617188 MULTI HCD FTMS 0 0 0 20924 320960.03125 0.8866004539731717 4 -0.0779266357421875 1 Unmodified _ADSEGFIPLTF_ ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-3|WDCP 34.40172386719151 0.17300472122796048 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[W{M(Oxidation (M))|F}][{I|L}P]T{M(Oxidation (M))|F} 9 5 + 45.797 0 0 3.8306 3.8306 88.245 0 0 0 3.2248268577559713 14.730749808046319 3.2248268577559713 19.75695199550941 0 0.8807196863200843 1.3979400086720375 1.066901560044258 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[W{M(Oxidation (M))|F}][{I|L}P]T{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}DD[{I|L}V]TT{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[W{M(Oxidation (M))|F}]M{I|L}[{I|L}P]{M(Oxidation (M))|F};{[TV]|[{I|L}S]}WDD[{I|L}V]TT{M(Oxidation (M))|F};{[YC]|[HE]}T[HN]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[W{I|L}] 3.8306;2.1781;0.90199;0.50524;0.15305 -;-;-;-;- 1312 NaN NaN 235545.5 NaN 16812 4111 20924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20926 85.328 NaN 270920 35 0 74337 0.262 + -1 ICSSAGIVAL 10 55 495.7682169085665 989.521880883933 2 495.7685241699219 MULTI HCD FTMS 0 0 0 20924 138272.03125 0.697178272333783 -3 0.0617218017578125 2 Carbamidomethyl (C) _IC(Carbamidomethyl (C))SSAGIVAL_ REV__ENSG00000187714|ENST00000374115|SLC18A3 14.838274106304384 0.3723198072575719 2 VA{I|L} 3 -1 36.198 0 0 3.6581 0 0 688.3217336779056 0 688.3217336779056 0 13.802112417116064 0 0 0 1 0 0 0 VA{I|L} 3.6581 + + 145 NaN NaN 126600.3 NaN 16813 4111 20924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20927 85.331 NaN 352180 35 0 48031 0.261 + 7183 FSLELLVQE 9 75 539.2950424544855 1076.575531975771 2 539.2953491210938 MULTI HCD FTMS 0 0 0 20924 52754.58203125 0.40906239858759724 4 -0.0779266357421875 3 Unmodified _FSLELLVQE_ REV__ENSG00000137474|ENST00000409709|MYO7A;REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF;REV__nc|ENSG00000137474|Q13402-2|MYO7A;REV__nc|ENSG00000137474|Q13402-5|MYO7A;REV__nc|ENSG00000137474|Q13402-6|MYO7A;REV__nc|ENSG00000137474|Q13402-7|MYO7A;REV__nc|ENSG00000137474|Q13402-8|MYO7A 29.081581746732265 0.1154664336125038 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}VT 8 -1 26.742 0 0 2.484 0 0 0 163.12427400141465 163.12427400141465 1.0936627486518162 0 0 0 0 0 1.3979400086720375 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TD{M(Oxidation (M))|F}VT 2.484 - 779 NaN NaN 151709.2 NaN 16814 4111 20924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20928 85.335 NaN 243800 35 0 20265 0.261 + 22904 QYPVIIHLIW 10 70 641.3712104567475 1280.7278679802948 2 641.3722534179688 MULTI HCD FTMS 0 0 0 20924 81188.71875 0.38579677383404587 4 -0.0779266357421875 4 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 57.47134341890925 0.050617907945061276 2 [YQ][VP]{I|L}{I|L}[H{I|L}]{I|L}W 10 0 + 59.442 0 0 4.6413 4.6413 87.718 0 0 0 11.60672998838141 11.60672998838141 11.60672998838141 11.60672998838141 0 1.579689690656103 1.6989700043360187 0 0 + + [YQ][VP]{I|L}{I|L}[H{I|L}]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}S[VP]{I|L}{I|L}[H{I|L}]{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}{I|L}[WP][VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[H{I|L}]{I|L}[WP]{I|L}[VS] 4.6413;3.735;2.1156;1.9771 +;-;-;- + 142 + NaN NaN 122592.1 NaN 16815 4111 20924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20929 85.338 NaN 194840 35 0 23512 0.261 + -1 FCITCDASCT 10 57 617.7329567632001 1233.4513605932002 2 617.7354125976562 MULTI HCD FTMS 0 0 0 20924 51846.87109375 0.7409152633088494 4 -0.0779266357421875 5 3 Carbamidomethyl (C) _FC(Carbamidomethyl (C))ITC(Carbamidomethyl (C))DASC(Carbamidomethyl (C))T_ REV__ENSG00000162643|ENST00000294664|DNAI3;REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 1.4819007175156935 0.4674597685733628 2 N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3 -1 7.4473 0 0 0.60378 0 0 840.3154709990775 0 840.3154709990775 0 0.4845500650402812 0 0 0 0 0 0 0 N{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 0.60378 - 30 NaN NaN 122404.3 NaN 16816 4111 20924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20930 85.341 NaN 114260 35 0 27541 0.264 + 1718 CHPSRGPF 8 39 450.7103793301152 899.4062057270304 2 450.71087646484375 MULTI HCD FTMS 0 0 0 20924 39252.921875 0.7388601665635075 -1 0.019500732421875 6 Unmodified _CHPSRGPF_ ENSG00000119283|ENST00000366653|TRIM67;nc|ENSG00000119283|Q6ZTA4-2|TRIM67 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 7 21.99 0 0 2.4449 0 0 734.3273768469508 0 734.3273768469508 0 18.89075625191822 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.4449 + + 7 + NaN NaN 106510.7 NaN 16817 4111 20924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20932 85.346 NaN 1930700 35 0 90197 0.327 -1 0 114 545.3169038290621 1088.619254724924 2 545.317138671875 MULTI HCD FTMS 0 0 0 20931 2013213.75 0.4879847424608545 30 -0.7586898803710938 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3415 0 0 923.5403800684772 0 923.5403800684772 0 3.1575521824790336 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3415 - 526 + NaN NaN 383332.3 NaN 16818 4112 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20933 85.351 NaN 1076100 35 0 80931 0.261 -1 0 111 566.7643568030153 1131.5141606728305 2 566.7647705078125 MULTI HCD FTMS 0 0 0 20931 678215.75 0.6685193778143365 3 -0.05509185791015625 2 NaN NaN 2 YTDP{M(Oxidation (M))|F}T{I|L} 7 -1 42.338 0 0 3.7417 0 0 276.1108030625571 0 276.1108030625571 0 15.588101035895829 0 0 0 1.4731975075880328 0 1.3283409326844267 0 YTDP{M(Oxidation (M))|F}T{I|L} 3.7417 - 1573 NaN NaN 255340.2 NaN 16819 4112 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20934 85.354 NaN 516310 35 0 58915 0.261 + 26878 SYIPSTVFF 9 71 530.7708107567754 1059.5270685803507 2 531.7896728515625 MULTI HCD FTMS 0 0 0 20931 43379.9375 0.45199900916683483 -4 0.08455657958984375 3 Unmodified _SYIPSTVFF_ ENSG00000140830|ENST00000268483|TXNL4B 43.85829265575387 0.04763305254408404 2 ETV{M(Oxidation (M))|F}ATV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 5 + 63.668 0 0 6.0091 6.0091 89.377 0 0 0 39.493559221610965 10.62346841520749 10.62346841520749 9.45046257204389 0 1.2302046884880937 0 0.805462187404089 0 ETV{M(Oxidation (M))|F}ATV{M(Oxidation (M))|F}{M(Oxidation (M))|F};ETV{M(Oxidation (M))|F}{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T][VG]{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.0091;5.1171;0.94455 -;-;- 580 + NaN NaN 160082 NaN 16820 4112 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20935 85.357 NaN 191410 35 0 9335.1 0.261 + 8082 GILWRVLFF 9 81 575.8419496470875 1149.669346360975 2 575.8427124023438 MULTI HCD FTMS 0 0 0 20931 220312.828125 0.20924407795621375 46 -1.1801071166992188 4 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 5.230669730166228 0.3113646817964458 2 A 1 9 6.7217 0 0 0.58466 0 0 193.1251467957365 882.4916475885374 1075.6167943842738 0 0 0 0 0 0.2742275032520141 0 0 0 A 0.58466 - 25 + NaN NaN 119371.1 NaN 16821 4112 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20936 85.361 NaN 624610 35 0 68077 0.261 + 34199 YPDLSELLM 9 95 548.7665982366932 1095.5186435401863 2 549.2696533203125 MULTI HCD FTMS 0 0 0 20931 156199.296875 0.9495773199244955 1 -0.01946258544921875 5 Oxidation (M) _YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 48.345845343767074 0.03388484103555672 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[RN]{I|L}E{I|L}{M(Oxidation (M))|F} 9 6 + 56.391 0 0 5.1475 5.1475 82.982 0 0 0 7.649087242336776 34.81500968926903 7.649087242336776 0.9813624419633271 0 1 1.5228787452803376 0.7059771852360797 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[RN]{I|L}E{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{M(Oxidation (M))|F}[HD]{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}E{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[MT][HT]{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ARRAE{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[RN]{I|L}NQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[RN]AE{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}NQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}{I|L}APQ{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}AV{[NV]|[RG]}AE{I|L}{M(Oxidation (M))|F} 5.1475;5.0579;4.9611;4.3476;4.2764;4.1194;4.0901;3.933;3.9198;3.8876 -;-;-;-;-;-;-;-;-;- 2042 NaN NaN 175501.3 NaN 16822 4112 20931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20938 85.366 NaN 535210 35 0 17781 0.327 -1 0 112 589.3427834460477 1176.6710139588954 2 589.3432006835938 MULTI HCD FTMS 0 0 0 20937 510170.0625 0.9813758835976043 1 -0.02277374267578125 1 NaN NaN 2 YYHHTTQD 8 -1 25.269 0 0 2.1475 0 0 0 128.23433643135778 128.23433643135778 15.78849377292905 0 0 0 0 0 1.2218487496163564 0.3252574989159953 0 YYHHTTQD 2.1475 - 709 NaN NaN 168872.4 NaN 16823 4113 20937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20939 85.37 NaN 302900 35 0 41677 0.261 + 19981 NYIDIVKYVF 10 42 637.3451616224884 1272.6757703117767 2 637.3455810546875 MULTI HCD FTMS 0 0 0 20937 125264.1796875 0.3465608464464848 4 -0.09455108642578125 2 Unmodified _NYIDIVKYVF_ ENSG00000162408|ENST00000377705|NOL9 39.922945255915025 0.1460754433722493 2 [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F} 10 0 + 92.6 0 0 7.276 7.276 93.37 0 0 0 24.25968732272281 89.50109420336375 24.25968732272281 17.501225267834002 0 2.3494850021680094 1.6989700043360187 0 0 + + [YN]{I|L}D{I|L}VKYV{M(Oxidation (M))|F};[YN]{I|L}D{I|L}V[YV]K{M(Oxidation (M))|F} 7.276;5.9009 +;- + 74 NaN NaN 137850.1 NaN 16824 4113 20937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20940 85.374 NaN 218610 35 0 51293 0.263 + 31932 VYPADVVLF 9 43 511.7812788961928 1021.5480048591857 2 511.78167724609375 MULTI HCD FTMS 0 0 0 20937 108915.375 0.5717925943231085 6 -0.133544921875 3 Unmodified _VYPADVVLF_ ENSG00000130717|ENST00000372215|UCK1;ENSG00000143179|ENST00000367879|UCK2;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-2|UCK1;nc|ENSG00000130717|Q9HA47-3|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 50.855029805455786 0.030374663808198754 2 VV{I|L}{M(Oxidation (M))|F} 4 5 47.607 0 0 4.6603 0 0 545.2505360334 0 545.2505360334 0 32.17661611443049 0 0 0 1.805462187404089 0 0 0 + VV{I|L}{M(Oxidation (M))|F} 4.6603 + + 78 NaN NaN 133355.6 NaN 16825 4113 20937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20941 85.377 NaN 317080 35 0 24181 0.261 + 13607 KYPENFFLL 9 67 585.8129910707257 1169.6114292082514 2 585.8132934570312 MULTI HCD FTMS 0 0 0 20937 122233.78125 0.41095187064645256 31 -0.7915573120117188 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 38.175570920033316 0.07371992880350783 2 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 5 43.914 0 0 3.7546 0 0 475.20479018379064 0 475.20479018379064 0 4.273174902439578 0 0 0 1.110924374808178 0 0 0.3252574989159953 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.7546 - 594 NaN NaN 141211 NaN 16826 4113 20937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20942 85.38 NaN 784300 35 0 41200 0.261 + 25515 SFITSSWTF 9 76 538.2599087755979 1074.5052646179956 2 538.2584228515625 MULTI HCD FTMS 0 0 0 20937 268569.90625 0.1443193416505822 -12 0.2802276611328125 5 Unmodified _SFITSSWTF_ ENSG00000116209|ENST00000234831|TMEM59 133.70201269244603 0.0003804610509361063 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))TVT{M(Oxidation (M))|F} 9 3 + 88.484 0 0 8.2349 8.2349 89.381 0 0 0 22.632192780232785 58.22637280169687 22.632192780232785 3.7944822554545254 0 2.305462187404089 1.6989700043360187 1.1307196863200843 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))TVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}WT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))T{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TQ[MT]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[CG]TVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[DA]|[EG]}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[CG]T{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[TV]|[{I|L}S]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[AG][MT]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}STVT{M(Oxidation (M))|F} 8.2349;7.8817;7.6954;7.4888;7.3779;7.0247;6.8384;6.4852;6.3291;6.0495 -;+;-;-;-;-;-;-;-;- + 1928 NaN NaN 209843.7 NaN 16827 4113 20937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20943 85.384 NaN 106040 35 0 10416 0.261 -1 MPDYMILQEL 10 37 634.798581292156 1267.5826096511119 2 634.7988891601562 MULTI HCD FTMS 0 0 0 20937 51369.44921875 0.8488462460507795 2 -0.0356292724609375 6 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 24.881564428377168 0.27837825820855233 2 {I|L}{I|L}QE{I|L} 5 -1 49.112 0 0 3.8745 0 0 653.2231922834 0 653.2231922834 0 46.01342204748164 0 0 0 1.6549471895720984 0 0 0 {I|L}{I|L}QE{I|L} 3.8745 + + 37 NaN NaN 113290 NaN 16828 4113 20937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20945 85.388 NaN 421780 35 0 56415 0.327 + 32214 VYTILTVQL 9 60 525.3156571336851 1048.6167613341702 2 525.3158569335938 MULTI HCD FTMS 0 0 0 20944 149442.109375 0.3118127754399786 5 -0.11077117919921875 1 Unmodified _VYTILTVQL_ ENSG00000082996|ENST00000392894|RNF13 83.42873516780209 0.004742894019233849 2 QVT{I|L}{I|L}TP{M(Oxidation (M))|F} 8 5 76.764 0 0 7.3205 0 0 131.09521081313352 0 131.09521081313352 0 60.22160958700539 0 0 0 2.504432191740108 0 1.9604093769761874 0 QVT{I|L}{I|L}TP{M(Oxidation (M))|F} 7.3205 - 253 + NaN NaN 174700.4 NaN 16829 4114 20944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20946 85.393 NaN 401810 35 0 9828.4 0.261 -1 0 103 597.8559943719408 1193.6974358106816 2 597.856201171875 MULTI HCD FTMS 0 0 0 20944 193101.09375 0.6480802963918539 2 -0.04561614990234375 2 NaN NaN 2 {I|L}QNN 4 -1 18.43 0 0 1.5439 0 0 706.4327219119574 0 706.4327219119574 0 8.252574989159951 0 0 0 0.09948500216800943 0 0 0.2742275032520141 {I|L}QNN 1.5439 - 234 + NaN NaN 165047.8 NaN 16830 4114 20944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20947 85.396 NaN 158630 35 0 19028 0.261 -1 MPTCSFPEYF 10 48 619.2482369177992 1236.4819209023983 2 619.2495727539062 MULTI HCD FTMS 0 0 0 20944 78539.2265625 0.7168762061561375 -3 0.06507110595703125 3 Oxidation (M) _M(Oxidation (M))PTCSFPEYF_ ENSG00000174233|ENST00000357869|ADCY6;ENST00000547260.5_1_12:49165333-49167887:-|nuORF;ENST00000548351.1_1_12:49166100-49167800:-|nuORF 6.2057823575117 0.44245551207394906 2 Y{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1002 0 0 908.3394439837131 0 908.3394439837131 0 11.532125137753438 0 0 0 0.5 0 0 0 Y{M(Oxidation (M))|F} 2.1002 + + 32 NaN NaN 123346.8 NaN 16831 4114 20944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20949 85.401 NaN 1327600 35 0 152850 0.327 -1 0 86 582.7996826233004 1163.5848123134008 2 582.8002319335938 MULTI HCD FTMS 0 0 0 20948 868311.3125 0.29043654472314984 6 -0.13689422607421875 1 NaN NaN 2 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 68.663 0 0 5.9009 0 0 0 162.05438390864666 162.05438390864666 38.67854258511194 0 0 0 0 1.7856668758921828 1.5228787452803376 1.829689690656103 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 5.9009 - 1769 NaN NaN 302144.7 NaN 16832 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20950 85.406 NaN 975640 35 0 32797 0.261 -1 0 111 553.8300991066263 1105.6456452800526 2 553.8302612304688 MULTI HCD FTMS 0 0 0 20948 966579.0625 0.43008251769690403 33 -0.8836517333984375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.1847 0 0 940.5664959654026 0 940.5664959654026 0 2.7422750325201406 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1847 - 346 + NaN NaN 262156.2 NaN 16833 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20951 85.409 NaN 742890 35 0 71284 0.261 + 19099 NFDNILNSF 9 87 542.2589812322379 1082.5034095312758 2 542.25927734375 MULTI HCD FTMS 0 0 0 20948 269166.0625 0.5734660608419118 3 -0.07509613037109375 3 Unmodified _NFDNILNSF_ ENSG00000186815|ENST00000335509|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;nc|ENSG00000186815|Q9ULQ1-3|TPCN1 163.68669969883206 7.261465303366562E-09 2 SN{I|L}{I|L}NDEN 8 6 75.092 0 0 6.9369 0 0 165.07911879707189 0 165.07911879707189 0 44.52375788868295 0 0 0 2.4802046884880937 0 1.6351518780601921 1.055462187404089 SN{I|L}{I|L}NDEN 6.9369 - 1637 NaN NaN 206690.2 NaN 16834 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20952 85.413 NaN 776050 35 0 202030 0.261 + 26879 SYIPSTVFF 9 58 530.7708107567754 1059.5270685803507 2 530.7713623046875 MULTI HCD FTMS 0 0 0 20948 285642.03125 0.775028428026579 3 -0.07509613037109375 4 Unmodified _SYIPSTVFF_ ENSG00000140830|ENST00000268483|TXNL4B 107.99703571036002 0.003269392969029945 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PSTV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.16 0 0 7.5657 7.5657 95.078 0 0 0 7.147642715192504 66.34820009305471 7.147642715192504 31.977437731477423 0 2.774227503252014 0 1.0356668758921828 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PSTV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][DV]STV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VV{[CP]|[EA]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[ES]|[DT]|[{I|L}C]}[VS]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.5657;4.5476;4.0058;3.2776 +;-;-;- + 383 NaN NaN 206421 NaN 16835 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20953 85.416 NaN 409780 35 0 46276 0.261 + 34200 YPDLSELLM 9 82 548.7665982366932 1095.5186435401863 2 548.7651977539062 MULTI HCD FTMS 0 0 0 20948 121848.84375 0.6784101472970601 3 -0.07509613037109375 5 Oxidation (M) _YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 57.47134341890925 0.0211188941628804 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}QN{I|L}{M(Oxidation (M))|F} 9 5 + 49.565 0 0 4.5244 4.5244 82.172 0 0 0 8.655178407287416 25.128421796822032 8.655178407287416 1.249387366082999 0 1 1.6989700043360187 0.3054621874040891 0.2742275032520141 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}QN{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}G[NG]QN{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}Q{I|L}N{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}QGG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}[AG]N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}G[NG]Q{I|L}N{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}G[NG][AG]N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}G[NG]QGG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[PA]AEN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[PA]WQ{M(Oxidation (M))|F} 4.5244;4.4103;3.7047;3.6838;3.6838;3.5907;3.5738;3.5738;3.3871;3.2681 -;-;-;-;-;-;-;-;-;- 1320 NaN NaN 151052.4 NaN 16836 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20954 85.419 NaN 145930 35 0 16902 0.261 + 15718 LPEVEIISL 9 52 506.7996592410125 1011.584765548825 2 506.8000183105469 MULTI HCD FTMS 0 0 0 20948 29270.06640625 0.44516777521892015 -2 0.0356292724609375 6 Unmodified _LPEVEIISL_ ENSG00000182606|ENST00000327628|TRAK1 30.636539890814138 0.10832830463492794 2 {I|L}{I|L}S{I|L} 4 5 43.73 0 0 4.3229 0 0 567.2901478498062 0 567.2901478498062 0 26.740247145042062 0 0 0 1.305462187404089 0 0.3252574989159953 0 + {I|L}{I|L}S{I|L} 4.3229 + + 44 NaN NaN 121481 NaN 16837 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20955 85.423 NaN 106540 35 0 11905 0.261 + 23249 RGKTEAAIK 9 52 487.2930777807898 972.5716026283797 2 487.2931823730469 MULTI HCD FTMS 0 0 0 20948 26453.564453125 0.13884890226306829 -4 0.0779266357421875 7 Unmodified _RGKTEAAIK_ ENSG00000135842|ENST00000367511|NIBAN1 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 98259.3 NaN 16838 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20956 85.426 NaN 116440 35 0 6808.8 0.261 -1 AASFFSDFGL 10 52 552.2560459524136 1102.4975389716271 2 552.75927734375 MULTI HCD FTMS 0 0 0 20948 22742.822265625 0.683240296955969 -1 0.01285552978515625 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AASFFSDFGL_ ENSG00000160505|ENST00000301295|NLRP4 9.38312468134398 0.42334543440173333 2 YSC(Carbamidomethyl (C)){I|L}E 5 -1 21.655 0 0 1.9642 0 0 0 447.1877840631469 447.1877840631469 14.6657624451305 0 0 0 0 0.5 0 0 0 YSC(Carbamidomethyl (C)){I|L}E 1.9642 - 37 + NaN NaN 98707.5 NaN 16839 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20957 85.429 NaN 133350 35 0 12510 0.261 + -1 LAEPEVDVLCV 11 52 622.3170067745026 1242.619460615805 2 622.8182983398438 MULTI HCD FTMS 0 0 0 20948 10475.1943359375 0.3252497940240098 6 -0.13689422607421875 9 Carbamidomethyl (C) _LAEPEVDVLC(Carbamidomethyl (C))V_ REV__ENSG00000161647|ENST00000398389|MPP3 17.11289562659939 0.30797719109864646 2 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 49.332 0 0 3.97 0 0 0 162.091936560954 162.091936560954 36.14393726401687 0 0 0 0 1 2 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 3.97 - 64 NaN NaN 101307.1 NaN 16840 4115 20948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20959 85.434 NaN 756860 35 0 35701 0.327 -1 0 105 567.3307994004714 1132.6470458677427 2 567.3309326171875 MULTI HCD FTMS 0 0 0 20958 369966.15625 0.20136028937032008 41 -1.06610107421875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2894 0 0 967.5682932816084 0 967.5682932816084 0 1.1092437480817807 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2894 - 364 + NaN NaN 220203.8 NaN 16841 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20960 85.438 NaN 269670 35 0 74802 0.261 + 5996 FPDQVQDLVF 10 35 604.3031047907117 1206.5916566482233 2 604.3035278320312 MULTI HCD FTMS 0 0 0 20958 158494.5625 0.6052110193949222 4 -0.078033447265625 2 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 10.150570793230772 0.4161670024087991 2 V{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1523 0 0 942.4439689005563 0 942.4439689005563 0 13.979400086720375 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.1523 + + 8 NaN NaN 150525.7 NaN 16842 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20961 85.442 NaN 275840 35 0 36433 0.261 + 27286 SYQDFFEAI 9 57 560.2535123543116 1118.4924717754232 2 560.25341796875 MULTI HCD FTMS 0 0 0 20958 148602.015625 0.061240593813465166 14 -0.34960174560546875 3 Unmodified _SYQDFFEAI_ ENSG00000118217|ENST00000367942|ATF6 43.77239144664712 0.04802738721622131 2 C{M(Oxidation (M))|F}EA{I|L} 5 5 52.959 0 0 4.7348 0 0 537.2470570294937 0 537.2470570294937 0 45.511525224473814 0 0 0 1.5 0 0 0 C{M(Oxidation (M))|F}EA{I|L} 4.7348 - 121 NaN NaN 147007 NaN 16843 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20962 85.445 NaN 218470 35 0 14973 0.261 -1 0 65 578.3180590378549 577.3107825712549 1 578.3180541992188 MULTI HCD FTMS 0 0 0 20958 86119.4375 0.2760416160616113 9 -0.2256011962890625 4 NaN NaN 2 [{I|L}T]PT{M(Oxidation (M))|F} 5 -1 + 37.703 0 0 6.5308 6.5308 92.984 0 0 0 8.762874945799766 24.51544993495972 8.762874945799766 27.245462655597095 0 0 0 0.8494850021680094 0 [{I|L}T]PT{M(Oxidation (M))|F};T[YV][VP] 6.5308;1.8114 -;- 46 NaN NaN 123391.3 NaN 16844 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20963 85.449 NaN 255980 35 0 27128 0.261 + 6805 FPSDLDLDMF 10 61 608.2654180625466 1214.516283191893 2 608.265380859375 MULTI HCD FTMS 0 0 0 20958 58852.98828125 0.5041408752176828 -4 0.08785247802734375 5 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 56.17704186161178 0.05532499666593632 2 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 63.003 0 0 5.1875 0 0 559.2635975568375 0 559.2635975568375 0 42.825834421237516 0 0 0 1.8494850021680094 0 0.805462187404089 0 + D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.1875 + + 184 NaN NaN 129503.4 NaN 16845 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20964 85.452 NaN 229770 35 0 36411 0.261 + 32845 WVPVEKNGEE 10 58 593.79137533656 1185.56819773992 2 593.79248046875 MULTI HCD FTMS 0 0 0 20958 104345.6875 0.2289009230451991 7 -0.1598052978515625 6 Unmodified _WVPVEKNGEE_ ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-9|SON 17.11289562659939 0.35104376501799556 2 VW{[DS]|[MA]|[CV]|TT}VT 6 8 45.099 0 0 3.804 0 0 0 495.2230279154346 495.2230279154346 21.827665712010216 0 0 0 0 0.9247425010840047 1.5228787452803376 0.4247425010840047 0 VW{[DS]|[MA]|[CV]|TT}VT 3.804 - 59 + NaN NaN 127534.9 NaN 16846 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20965 85.455 NaN 72628 35 0 6110.8 0.264 + 7249 FSYDHGPS 8 54 455.18916734157443 NaN 0 455.162109375 PEAK HCD FTMS 0 0 0 20958 8155.94189453125 0.751634430153271 8 -0.18601226806640625 7 Unmodified _FSYDHGPS_ REV__ENSG00000188649|ENST00000646931|CC2D2B 5.230669730166228 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.27239 0 0 88.57522081420514 669.7306002252561 758.3058210394613 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.27239 + + 4 + NaN NaN 96444.7 NaN 16847 4116 20958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20967 85.46 NaN 2150100 35 0 304710 0.327 + 13203 KYLVIGDLLF 10 110 590.8521028818799 1179.6896528305597 2 590.8526611328125 MULTI HCD FTMS 0 0 0 20966 845038.1875 0.3461568849336392 -3 0.07177734375 1 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 76.82478488871298 0.009498572185128612 2 [YK]{I|L}V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 82.056 0 0 6.9558 6.9558 86.356 0 0 0 1.7609125905568135 15.24227503252014 1.7609125905568135 1.7609125905568135 0 2.7302046884880937 0 0.5649093276264391 0 + + [YK]{I|L}V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]KV{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]VK{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[YV]KGD{I|L}{I|L}{M(Oxidation (M))|F};[YK]{I|L}V{I|L}GD{I|L}{M(Oxidation (M))|F}{I|L};{I|L}{I|L}DG{I|L}VYK{I|L}{M(Oxidation (M))|F};[Y{I|L}]KV{I|L}GD{I|L}{M(Oxidation (M))|F}{I|L};[Y{I|L}]VTS{I|L}PK{I|L}{M(Oxidation (M))|F};{I|L}{I|L}DG[YV]K{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}DG{I|L}VKY{I|L}{M(Oxidation (M))|F} 6.9558;6.8065;5.8927;5.6853;5.6637;5.5666;5.5144;5.4812;5.3389;5.3114 +;-;-;-;-;-;-;-;-;- + 6461 NaN NaN 421837.2 NaN 16848 4117 20966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20968 85.465 NaN 313180 35 0 66235 0.264 -1 LACCKGTG 8 54 426.19119060502334 850.3678282768467 2 426.1912841796875 MULTI HCD FTMS 0 0 0 20966 320633.09375 0.5032621452827183 1 -0.01617431640625 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LAC(Carbamidomethyl (C))CKGTG_ ENST00000284136.10_1_7:84710854-84710890:-|nuORF 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 8.8958 0 0 1.0461 0 0 582.1900156321186 152.07129846744377 734.2613140995624 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L} 1.0461 + + 10 + NaN NaN 148146.8 NaN 16849 4117 20966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20969 85.468 NaN 332020 35 0 137640 0.261 -1 0 67 562.3436428476501 1122.6727327621002 2 562.3440551757812 MULTI HCD FTMS 0 0 0 20966 157213.09375 0.34623072555530704 5 -0.09754180908203125 3 NaN NaN 2 T{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.5996 0 0 856.5467389650283 0 856.5467389650283 0 8.494850021680094 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 1.5996 - 73 + NaN NaN 149926 NaN 16850 4117 20966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20970 85.471 NaN 65767 35 0 5572.4 0.261 -1 FFRRCWDY 8 39 625.283515400915 NaN 0 625.284912109375 PEAK HCD FTMS 0 0 0 20966 43098.74609375 0.9691164205874719 -2 0.05892181396484375 4 Carbamidomethyl (C) _FFRRC(Carbamidomethyl (C))WDY_ ENST00000308982.11_1_3:128631468-128631576:+|nuORF 0.6903765706972694 0.38822285293237185 2 {I|L} 1 -1 5.4846 0 0 0.43927 0 0 148.11909029660006 984.3209932916624 1132.4400835882625 0 0 0 0 0 0 0 0 0 {I|L} 0.43927 - 2 + NaN NaN 101540.1 NaN 16851 4117 20966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20972 85.476 NaN 1803900 35 0 58178 0.327 -1 0 127 545.3169038290621 1088.619254724924 2 545.3170166015625 MULTI HCD FTMS 0 0 0 20971 1750982.125 0.42442217639417806 36 -0.9522247314453125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3415 0 0 923.540319033321 0 923.540319033321 0 2.6668155696191125 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3415 - 534 + NaN NaN 382457.8 NaN 16852 4118 20971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20973 85.481 NaN 243550 35 0 57362 0.261 + 16252 LPYWEVAL 8 66 495.7682169085665 989.521880883933 2 495.76861572265625 MULTI HCD FTMS 0 0 0 20971 111929.8828125 0.5643591232174189 4 -0.08136749267578125 2 Unmodified _LPYWEVAL_ ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD 18.13498045792455 0.4603629008820478 2 VA{I|L} 3 5 36.198 0 0 3.6581 0 0 688.3255871114895 0 688.3255871114895 0 20.52378753635658 0 0 0 1 0 0 0 + VA{I|L} 3.6581 + + 114 NaN NaN 120046.2 NaN 16853 4118 20971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20974 85.484 NaN 172170 35 0 22889 0.261 + -1 CVHTFEEMPE 10 53 619.2482369177992 1236.4819209023983 2 619.2477416992188 MULTI HCD FTMS 0 0 0 20971 49317.203125 0.4501486839362661 1 -0.02281951904296875 3 Oxidation (M) _CVHTFEEM(Oxidation (M))PE_ REV__ENST00000389912.6_1_14:70809414-70826359:-|nuORF;REV__ENST00000557612.5_1_14:70795945-70826359:-|nuORF 13.042465956692817 0.38911719078024076 2 V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{M(Oxidation (M))|F} 5 -1 30.942 0 0 2.5024 0 0 550.1556483725618 0 550.1556483725618 0 9.973024840566467 0 0 0 1.3494850021680094 0 0 0 V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{M(Oxidation (M))|F} 2.5024 - 43 NaN NaN 123755.4 NaN 16854 4118 20971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20975 85.488 NaN 369720 35 0 19452 0.261 -1 0 84 556.3078005357436 555.3005240691435 1 556.3087158203125 MULTI HCD FTMS 0 0 0 20971 134412.890625 0.6275618827735552 -2 0.04233551025390625 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 2.7885 0 0 390.221496824806 0 390.221496824806 0 3.0102999566398125 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.7885 - 59 + NaN NaN 142108.3 NaN 16855 4118 20971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20976 85.491 NaN 244910 35 0 24950 0.261 + 6806 FPSDLDLDMF 10 52 608.2654180625466 1214.516283191893 2 608.7678833007812 MULTI HCD FTMS 0 0 0 20971 62187.4921875 0.7150361430155108 -2 0.04233551025390625 5 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 65.23502041540118 0.023231415588018726 2 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 63.443 0 0 5.2238 0 0 559.2640441893901 0 559.2640441893901 0 47.245462655597095 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2238 + + 182 NaN NaN 126673 NaN 16856 4118 20971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20977 85.494 NaN 75203 35 0 11771 0.264 + 16531 LTMEPIVL 8 35 458.26458036346025 914.5146077937205 2 458.2646484375 MULTI HCD FTMS 0 0 0 20971 43076.76171875 0.6532968601895734 6 -0.1436767578125 6 Unmodified _LTMEPIVL_ ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant 8.593279151180031 0.5292430274356741 2 V{I|L} 2 6 25.969 0 0 2.8397 0 0 684.3507411969392 0 684.3507411969392 0 25.969100130080562 0 0 0 0.5 0 0 0 + V{I|L} 2.8397 + + 2 NaN NaN 97413 NaN 16857 4118 20971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20979 85.499 NaN 132190 35 0 6811.4 0.327 + 8083 GILWRVLFF 9 74 575.8419496470875 1149.669346360975 2 575.8424682617188 MULTI HCD FTMS 0 0 0 20978 138884.953125 0.13190722576601027 53 -1.3223800659179688 1 Unmodified _GILWRVLFF_ ENST00000527958.5_1_11:117039007-117039196:+|nuORF 2.302733041254933 0.33356062215410776 2 C(Carbamidomethyl (C)) 1 9 3.9794 0 0 0.34613 0 0 165.18492360882493 821.4398287408811 986.6247523497061 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.34613 - 12 + NaN NaN 122695.7 NaN 16858 4119 20978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20980 85.504 NaN 47961 35 0 5626.9 0.263 + -1 WIGDPALCLYT 11 31 436.87979131086377 1307.6175445327913 3 436.8793640136719 MULTI HCD FTMS 0 0 0 20978 18428.07421875 0.6804440524120485 1 -0.01287841796875 2 Carbamidomethyl (C) _WIGDPALC(Carbamidomethyl (C))LYT_ REV__ENSG00000150471|ENST00000683033|ADGRL3;REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3;REV__nc|ENSG00000150471|Q9HAR2-3|ADGRL3;REV__nc|ENSG00000150471|Q9HAR2-4|ADGRL3;REV__nc|ENSG00000150471|Q9HAR2|ADGRL3 0.5059551277355931 0.4167017191902429 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95107.9 NaN 16859 4119 20978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20981 85.507 NaN 112130 35 0 6575.1 0.261 + 22905 QYPVIIHLIW 10 46 641.3712104567475 1280.7278679802948 2 641.8726196289062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 15.847184025352803 0.36288280428275715 2 SW 2 9 29.776 0 0 2.325 0 0 989.6048002946283 0 989.6048002946283 0 19.625984483110628 0 0 0 0.5 0 0.3807196863200844 0 SW 2.325 - 26 NaN NaN 110419.9 NaN 16860 4119 20978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20983 85.512 NaN 2516300 35 0 134080 0.327 + 25516 SFITSSWTF 9 104 538.2599087755979 1074.5052646179956 2 538.2581787109375 MULTI HCD FTMS 0 0 0 20982 1594841.625 0.8570077585040102 -5 0.1107940673828125 1 Unmodified _SFITSSWTF_ ENSG00000116209|ENST00000234831|TMEM59 141.82661023413823 1.746659319327287E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))TVT{M(Oxidation (M))|F} 9 3 + 93.739 0 0 8.7239 8.7239 90.777 0 0 0 8.57840941039747 14.973024840566467 8.57840941039747 5.796896906561031 0 2.305462187404089 1.6989700043360187 1.6861818737241734 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))TVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TC(Carbamidomethyl (C))T{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}WT{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}T{[CA]|SS}WT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[CG]TVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T[CG]T{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[CA]|SS}{[DA]|[EG]}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[CA]|SS}STVT{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}TQ[MT]T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}NS{M(Oxidation (M))|F} 8.7239;8.1844;8.1131;7.9256;7.8669;7.3274;7.2562;7.0514;6.8323;6.7368 -;-;+;-;-;-;-;-;-;- + 6376 NaN NaN 469061.7 NaN 16861 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20984 85.516 NaN 269570 35 0 31172 0.261 + 13608 KYPENFFLL 9 68 585.8129910707257 1169.6114292082514 2 585.8132934570312 MULTI HCD FTMS 0 0 0 20982 104978.3515625 0.3529388480894296 38 -1.01422119140625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 34.93206674587334 0.08860942999206235 2 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5 5 50.433 0 0 4.3119 0 0 475.20979506660314 0 475.20979506660314 0 21.505149978319906 0 0 0 1.274227503252014 0 0 0.4247425010840047 R{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4.3119 - 351 NaN NaN 135611.5 NaN 16862 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20985 85.52 NaN 455780 35 0 46245 0.261 + -1 FSLAFHCSK 9 82 548.7665982366932 1095.5186435401863 2 549.2501831054688 MULTI HCD FTMS 0 0 0 20982 42019.25390625 0.2554462875812722 9 -0.2487640380859375 3 Carbamidomethyl (C) _FSLAFHC(Carbamidomethyl (C))SK_ REV__nc|ENSG00000280055|Q8N9X5|LINC02912 21.74664581756881 0.17247014374749275 2 WSST{I|L}SK 7 -1 42.221 0 0 3.8539 0 0 288.1093006818375 0 288.1093006818375 0 7.650837285499442 0 0 0 0 0 1.0774509799928715 0 WSST{I|L}SK 3.8539 - 756 NaN NaN 167424.2 NaN 16863 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20986 85.523 NaN 409960 35 0 51251 0.261 + 32215 VYTILTVQL 9 59 525.3156571336851 1048.6167613341702 2 525.3157348632812 MULTI HCD FTMS 0 0 0 20982 142774.734375 0.2979012165604643 11 -0.2977447509765625 4 Unmodified _VYTILTVQL_ ENSG00000082996|ENST00000392894|RNF13 66.45667989310934 0.010234776021261575 2 [YT]V{I|L}{I|L}TVQ{I|L} 9 2 + 78.47 0 0 7.4832 7.4832 86.768 0 0 0 17.67606240177031 62.98541123185075 17.67606240177031 0.4845500650402812 0 1.6747425010840047 1.154901959985743 1.4802046884880937 0 [YT]V{I|L}{I|L}TVQ{I|L};[YT]V{I|L}T{I|L}VQ{I|L};[YT]V{I|L}{I|L}TV[AG]{I|L};[YT]V{I|L}T{I|L}V[AG]{I|L} 7.4832;7.437;6.6051;6.5589 -;-;-;- 326 NaN NaN 168412.4 NaN 16864 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20987 85.527 NaN 106660 35 0 27522 0.261 + 22570 QSPNACRIH 9 28 513.2501637192489 NaN 0 513.2503662109375 PEAK HCD FTMS 0 0 0 20982 30454.55078125 0.663536802184905 2 -0.0456695556640625 5 Unmodified _QSPNACRIH_ ENSG00000087502|ENST00000360150|ERGIC2 16.149105407346934 0.21324626030841579 2 NA 2 7 24.464 0 0 2.3879 0 0 312.149117866429 524.2356627019506 836.3847805683795 0 0 0 0 0 1.3494850021680094 0 0 0 + NA 2.3879 + + 10 + NaN NaN 108294.1 NaN 16865 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20988 85.53 NaN 107890 35 0 8380.2 0.261 + 2196 DIIEPLLSL 9 44 506.7996592410125 1011.584765548825 2 506.79949951171875 MULTI HCD FTMS 0 0 0 20982 33929.51171875 0.5160331731558699 3 -0.0817718505859375 6 Unmodified _DIIEPLLSL_ ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-4|MYO9A 10.073929032068715 0.27331982688540024 2 {I|L}S{I|L} 3 6 28.188 0 0 2.7865 0 0 680.37407118965 0 680.37407118965 0 21.197887582883936 0 0 0 0.5 0 0 0 + {I|L}S{I|L} 2.7865 + + 12 NaN NaN 110152.4 NaN 16866 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20989 85.533 NaN 113220 35 0 15596 0.261 -1 MPDYMILQEL 10 52 634.798581292156 1267.5826096511119 2 634.7982177734375 MULTI HCD FTMS 0 0 0 20982 20644.189453125 0.3411316061697238 9 -0.2487640380859375 7 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 13.614867670302875 0.3837631382804675 2 {I|L}QE{I|L} 4 -1 40.745 0 0 3.2144 0 0 766.3029041974625 0 766.3029041974625 0 35.059034764951846 0 0 0 0.8807196863200843 0 0 0 {I|L}QE{I|L} 3.2144 + + 14 NaN NaN 136022.8 NaN 16867 4120 20982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20991 85.538 NaN 360660 35 0 38645 0.327 -1 0 77 582.7996826233004 1163.5848123134008 2 582.7999267578125 MULTI HCD FTMS 0 0 0 20990 243621.265625 0.08148750061252447 12 -0.32720184326171875 1 NaN NaN 2 [{I|L}T]PT{[CA]|SS}TP{I|L}T 10 -1 52.201 0 0 4.4863 0 0 0 162.0603800936473 162.0603800936473 18.51580776125664 0 0 0 0 1.5317183090963749 1.2218487496163564 0.8494850021680094 0 [{I|L}T]PT{[CA]|SS}TP{I|L}T 4.4863 - 515 NaN NaN 150673.7 NaN 16868 4121 20990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20992 85.543 NaN 205650 35 0 8062.4 0.261 + 25782 SLIGFIGDIFI 11 90 597.8420894678193 1193.6696260024385 2 597.8557739257812 MULTI HCD FTMS 0 0 0 20990 32870.33203125 1 0 0 2 Unmodified _SLIGFIGDIFI_ tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1 16.149105407346934 0.31637472687818013 2 DS 2 10 14.464 0 0 1.2117 0 0 973.5649891584 0 973.5649891584 0 1.7609125905568135 0 0 0 0 0 0 0 DS 1.2117 - 169 NaN NaN 138599.2 NaN 16869 4121 20990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20993 85.546 NaN 328620 35 0 28351 0.262 + 8780 HIGGHPPFF 9 65 504.7570326297221 1007.4995123262443 2 504.7564392089844 MULTI HCD FTMS 0 0 0 20990 32203.94140625 0.26636104848216824 10 -0.27164459228515625 3 Unmodified _HIGGHPPFF_ REV__ENSG00000189409|ENST00000356026|MMP23B;REV__nc|ENSG00000189409|O75900-2|MMP23B;REV__nc|ENSG00000189409|O75900-3|MMP23B 9.347437153973935 0.2795965555214564 2 V{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5776 0 0 743.3518642722344 0 743.3518642722344 0 20.48455006504028 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.5776 - 38 NaN NaN 144514.7 NaN 16870 4121 20990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20994 85.549 NaN 147840 35 0 11378 0.261 -1 MYPDLSELLM 10 55 622.2830516502665 1242.551550367333 2 622.2839965820312 MULTI HCD FTMS 0 0 0 20990 32778.703125 0.5189807914564869 -2 0.03897857666015625 4 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 34.40172386719151 0.19398797222092762 2 PSE{I|L}{I|L}{M(Oxidation (M))|F} 6 -1 51.653 0 0 4.157 0 0 538.2116566388687 0 538.2116566388687 0 41.19529776988717 0 0 0 1.4247425010840047 0 0.3494850021680094 0 PSE{I|L}{I|L}{M(Oxidation (M))|F} 4.157 - 63 NaN NaN 121720.4 NaN 16871 4121 20990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20995 85.553 NaN 73529 35 0 16950 0.264 -1 VSAVNCAGQ 9 34 453.2097732832681 NaN 0 453.20965576171875 PEAK HCD FTMS 0 0 0 20990 7872.11181640625 0.1842881203030896 -38 0.8614730834960938 5 Carbamidomethyl (C) _VSAVNC(Carbamidomethyl (C))AGQ_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 2.0597508629832335 0.2852655770354268 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.44 0 0 470.24097493392054 284.10337244205317 754.3443473759737 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.44 - 1 + NaN NaN 98318.8 NaN 16872 4121 20990 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20997 85.558 NaN 908220 35 0 29200 0.327 + 11223 IYLDELQVI 9 114 553.3108396392714 1104.6071263453427 2 553.8302612304688 MULTI HCD FTMS 0 0 0 20996 74381.5 0.6064678088965257 -1 0.01956939697265625 1 Unmodified _IYLDELQVI_ ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF 24.990960013464015 0.14443998892849796 2 {I|L}QV{I|L} 4 5 42.735 0 0 3.8688 0 0 633.3009727979113 0 633.3009727979113 0 26.827373417948426 0 0 0 1.2302046884880937 0 0 0 + {I|L}QV{I|L} 3.8688 + + 1232 NaN NaN 245142.3 NaN 16873 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20998 85.562 NaN 199490 35 0 16563 0.261 + 23938 RTRTVLEV 8 68 487.2930777807898 972.5716026283797 2 487.29315185546875 MULTI HCD FTMS 0 0 0 20996 155608.5 0.816754560470973 3 -0.101898193359375 2 Unmodified _RTRTVLEV_ REV__ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;REV__ENSG00000172932|ENST00000511455|ANKRD13D;REV__ENST00000508417.5_1_11:67066841-67069800:+|nuORF;REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF;REV__ENST00000513750.5_1_11:67066841-67067513:+|nuORF;REV__nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D 3.944395688203298 0.5361403129012058 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 3 -1 8.072 0 0 0.82996 0 0 0 549.3305802497265 549.3305802497265 4.9730248405664685 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 0.82996 - 18 NaN NaN 124885.7 NaN 16874 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 20999 85.566 NaN 180520 35 0 55185 0.261 + 18329 MPEVSVLVL 9 37 493.78300164315107 985.5514503531022 2 493.7832946777344 MULTI HCD FTMS 0 0 0 20996 62083.4765625 0.46881194438833396 1 -0.036102294921875 3 Unmodified _MPEVSVLVL_ ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 15.847184025352803 0.2234401846867398 2 {I|L}V{I|L} 3 6 34.693 0 0 3.5201 0 0 642.302537986525 0 642.302537986525 0 34.69273760456403 0 0 0 1 0 0 0 + {I|L}V{I|L} 3.5201 + + 16 NaN NaN 121909.1 NaN 16875 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21000 85.569 NaN 799160 35 0 125670 0.261 + 29519 TYVTILPEL 9 64 524.7999063802712 1047.5852598273423 2 524.8001098632812 MULTI HCD FTMS 0 0 0 20996 156669.390625 0.1746896913433169 -3 0.0585479736328125 4 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 71.92227651296345 0.008466197542043549 2 [YT]V{I|L}T{I|L}[EP]{I|L} 9 2 + 75.396 0 0 7.1972 7.1972 86.609 0 0 0 20.514611430754144 41.0244590915304 20.514611430754144 1.3163004893381611 0 2.1549471895720984 1.5228787452803376 0.8494850021680094 0 [YT]V{I|L}T{I|L}[EP]{I|L};[YT]VT{I|L}{I|L}[EP]{I|L};[YT]V{I|L}{I|L}T[EP]{I|L} 7.1972;7.0715;6.1208 -;+;- + 376 NaN NaN 203892.5 NaN 16876 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21001 85.572 NaN 234340 35 0 51506 0.261 + 26880 SYIPSTVFF 9 56 530.7708107567754 1059.5270685803507 2 530.7711791992188 MULTI HCD FTMS 0 0 0 20996 67707.9453125 0.18371099726051418 10 -0.26821136474609375 5 Unmodified _SYIPSTVFF_ ENSG00000140830|ENST00000268483|TXNL4B 71.13359017698441 0.008721403657255008 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{[MG]|[TS]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 57.993 0 0 5.4735 5.4735 91.101 0 0 0 7.147642715192504 47.53591878376909 7.147642715192504 26.27636252551653 0 2.2302046884880937 0 0.3807196863200844 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{[MG]|[TS]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}VV{[CP]|[EA]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4735;2.9935 +;- + 198 NaN NaN 141395.2 NaN 16877 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21002 85.576 NaN 272670 35 0 18183 0.261 + 11130 IYILSPYIF 9 76 564.8214417237983 1127.6283305143966 2 564.821533203125 MULTI HCD FTMS 0 0 0 20996 46227.9296875 0.1620415758398966 10 -0.26821136474609375 6 Unmodified _IYILSPYIF_ REV__ENSG00000177058|ENST00000396865|SLC38A9;REV__ENST00000515159.5_1_5:54922324-54929566:-|nuORF;REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9;REV__nc|ENSG00000177058|Q8NBW4-4|SLC38A9 9.347437153973935 0.2795965555214564 2 {I|L}{M(Oxidation (M))|F} 2 -1 17.078 0 0 1.5145 0 0 849.4653494126372 0 849.4653494126372 0 13.979400086720375 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.5145 + + 39 + NaN NaN 145648 NaN 16878 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21003 85.579 NaN 155580 35 0 27025 0.261 + 10032 IFCIVIGIL 9 55 495.80615827170453 989.5977636102091 2 495.8063659667969 MULTI HCD FTMS 0 0 0 20996 59296.75390625 0.39529575734811523 -1 0.01956939697265625 7 Unmodified _IFCIVIGIL_ tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1 14.581692164780916 0.23437375358055648 2 {I|L}VA{I|L} 4 6 21.146 0 0 2.1369 0 0 575.3132004771998 0 575.3132004771998 0 14.156687756324686 0 0 0 0 0 0 0 {I|L}VA{I|L} 2.1369 - 67 + NaN NaN 136174.1 NaN 16879 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21004 85.582 NaN 183010 35 0 11213 0.261 + 9937 IDLNFNNSF 9 61 542.2589812322379 1082.5034095312758 2 542.2594604492188 MULTI HCD FTMS 0 0 0 20996 38658.7734375 0.08236363200573645 10 -0.26821136474609375 8 Unmodified _IDLNFNNSF_ REV__tr|U7SWL0|U7SWL0_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01081PE=4SV=1 16.149105407346934 0.22083165093524068 2 {I|L}DDK{I|L}NS{M(Oxidation (M))|F} 8 -1 42.204 0 0 3.8988 0 0 132.0421488468574 0 132.0421488468574 0 30.521694116643374 0 0 0 1.305462187404089 0 0 0.3054621874040891 {I|L}DDK{I|L}NS{M(Oxidation (M))|F} 3.8988 - 274 + NaN NaN 131340.2 NaN 16880 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21005 85.586 NaN 224290 35 0 11683 0.261 -1 0 66 578.3180590378549 577.3107825712549 1 578.3197021484375 MULTI HCD FTMS 0 0 0 20996 42437.40625 0.13602608821862225 15 -0.41565704345703125 9 NaN NaN 2 T{M(Oxidation (M))|F} 2 -1 17.836 0 0 3.0895 0 0 311.1838551251969 0 311.1838551251969 0 5.2998363329962 0 0 0 0 0 0.28872548999643577 0 T{M(Oxidation (M))|F} 3.0895 - 12 NaN NaN 131066.4 NaN 16881 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21006 85.589 NaN 129110 35 0 21424 0.261 + 19982 NYIDIVKYVF 10 45 637.3451616224884 1272.6757703117767 2 637.8458862304688 MULTI HCD FTMS 0 0 0 20996 19371.00390625 0.0677864074431707 13 -0.3599853515625 10 Unmodified _NYIDIVKYVF_ ENSG00000162408|ENST00000377705|NOL9 4.189502756095605 0.45312800054222196 2 V{M(Oxidation (M))|F} 2 8 19.464 0 0 1.5294 0 0 1008.5268085546305 0 1008.5268085546305 0 -1.5051499783199063 -1.5051499783199063 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.5294 + + 4 NaN NaN 106494.3 NaN 16882 4122 20996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21008 85.594 NaN 455070 35 0 18694 0.327 -1 0 102 567.3307994004714 1132.6470458677427 2 567.3307495117188 MULTI HCD FTMS 0 0 0 21007 267499.9375 0.14559133021114692 48 -1.2083816528320312 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2894 0 0 967.5683848343427 0 967.5683848343427 0 1.1092437480817807 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2894 - 571 + NaN NaN 152903 NaN 16883 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21009 85.598 NaN 165350 35 0 41420 0.261 + 5997 FPDQVQDLVF 10 33 604.3031047907117 1206.5916566482233 2 604.3040161132812 MULTI HCD FTMS 0 0 0 21007 119995.6640625 0.45820308927150893 11 -0.2910308837890625 2 Unmodified _FPDQVQDLVF_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7 4.897010918128616 0.4493830473644964 2 V{M(Oxidation (M))|F} 2 8 25.217 0 0 2.0899 0 0 942.4446641278943 0 942.4446641278943 0 17.144556508912174 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.0899 + + 10 NaN NaN 117812.8 NaN 16884 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21010 85.602 NaN 157200 35 0 21321 0.262 + 31179 VVFMVLALV 9 54 495.80615827170453 989.5977636102091 2 495.80615234375 MULTI HCD FTMS 0 0 0 21007 150006.046875 1 0 0 3 Unmodified _VVFMVLALV_ ENSG00000188833|ENST00000371506|ENTPD8;ENTPD8|p.V483Pfs*36|1|0.29|ENSG00000188833|chr9:137434946-137434955|CAGCCCCCAC/-|frameshift_variant;nc|ENSG00000188833|Q5MY95-2|ENTPD8 5.230669730166228 0.3113646817964458 2 AV 2 7 9.464 0 0 0.95634 0 0 131.165114979395 685.3009737604124 816.4660887398074 0 0 0 0 0 0 0 0 0 AV 0.95634 - 46 + NaN NaN 110051.1 NaN 16885 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21011 85.605 NaN 285810 35 0 17921 0.261 -1 FPIDDVFVGM 10 75 578.2725242172125 1154.530495501225 2 578.2728881835938 MULTI HCD FTMS 0 0 0 21007 44767.81640625 0.1581640012506765 34 -0.9062957763671875 4 Oxidation (M) _FPIDDVFVGM(Oxidation (M))_ ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4 20.453626601364224 0.3197956946484955 2 V{M(Oxidation (M))|F}TS[Y{I|L}]G{M(Oxidation (M))|F} 8 -1 41.688 0 0 3.6108 0 0 222.06794783079278 0 222.06794783079278 0 31.18078902155817 0 0 0 1.805462187404089 0 0.4247425010840047 0 V{M(Oxidation (M))|F}TS[Y{I|L}]G{M(Oxidation (M))|F} 3.6108 - 170 + NaN NaN 132057.2 NaN 16886 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21012 85.608 NaN 176250 35 0 24741 0.261 + 5229 FFDAQEVLL 9 42 541.2819080403511 1080.5492631475022 2 541.2818603515625 MULTI HCD FTMS 0 0 0 21007 70828.4609375 0.7309359725377064 -1 0.036102294921875 5 Unmodified _FFDAQEVLL_ ENSG00000070882|ENST00000313367|OSBPL3;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6 21.536976647645854 0.1742816388551942 2 EV{I|L}{I|L} 4 5 43.928 0 0 4.0653 0 0 608.260593072839 0 608.260593072839 0 35.85593167151288 0 0 0 1.5 0 0 0 + EV{I|L}{I|L} 4.0653 + + 61 NaN NaN 117817.2 NaN 16887 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21013 85.612 NaN 111780 35 0 13245 0.261 -1 MYPDLSELLM 10 50 622.2830516502665 1242.551550367333 2 622.2823486328125 MULTI HCD FTMS 0 0 0 21007 63159.76171875 1 0 0 6 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 22.736283301280096 0.29844449404982915 2 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 57.598 0 0 4.6354 0 0 0 162.0230508903957 162.0230508903957 42.99349368937584 0 0 0 0 1.3494850021680094 2 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 4.6354 - 47 NaN NaN 105362 NaN 16888 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21014 85.615 NaN 113960 35 0 10367 0.262 + 35214 YVLPDGVLF 9 52 511.7812788961928 1021.5480048591857 2 511.7812194824219 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YVLPDGVLF_ REV__tr|U7SSL9|U7SSL9_FUSNUDUF4241domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01311PE=4SV=1 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 -1 18.852 0 0 1.8454 0 0 856.4689623560591 0 856.4689623560591 0 18.85151878060192 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.8454 + + 5 + NaN NaN 120205.9 NaN 16889 4123 21007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21016 85.62 NaN 1379900 35 0 219980 0.327 + 13204 KYLVIGDLLF 10 93 590.8521028818799 1179.6896528305597 2 590.8526000976562 MULTI HCD FTMS 0 0 0 21015 1010866.75 0.41408600278551533 4 -0.118011474609375 1 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 65.47368725323818 0.022948616544343086 2 [YK]{I|L}V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 83.249 0 0 7.0569 7.0569 92.565 0 0 0 4.259687322722812 32.39265910885365 4.259687322722812 15.160393207500306 0 3.064909327626439 0 0.3494850021680094 0 + + [YK]{I|L}V{I|L}GD{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[YV]KGD{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}K[YV]GD{I|L}{I|L}{M(Oxidation (M))|F};[YK]{I|L}V{I|L}GD{I|L}{M(Oxidation (M))|F}{I|L};{I|L}{I|L}DG{I|L}VYK{I|L}{M(Oxidation (M))|F};{I|L}{I|L}DGK[YV]{I|L}{I|L}{M(Oxidation (M))|F};[YK]{I|L}V{I|L}G{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F};{I|L}{I|L}DG{I|L}VY{I|L}K{M(Oxidation (M))|F};{I|L}{I|L}DG{I|L}K[YV]{I|L}{M(Oxidation (M))|F};{I|L}{I|L}DAVVYK{I|L}{M(Oxidation (M))|F} 7.0569;5.7718;5.6404;5.5712;5.3897;4.8064;4.7679;4.7107;4.4986;4.4543 +;-;-;-;-;-;-;-;-;- + 3056 NaN NaN 312701.2 NaN 16890 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21017 85.624 NaN 1031500 35 0 33749 0.261 + 12227 KLEEIRSKS 9 103 545.3169038290621 1088.619254724924 2 545.3170166015625 MULTI HCD FTMS 0 0 0 21015 1181223.875 0.2863179473269977 42 -1.064697265625 2 Unmodified _KLEEIRSKS_ ENST00000343889.8_1_1:2411150-2434522:+|nuORF;ENST00000473964.5_1_1:2433496-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-5|PLCH2 9.38312468134398 0.279288223203164 2 KQ{[QN]|[E{I|L}]|[KN]}KN 6 5 17.44 0 0 1.602 0 0 330.16734511543126 0 330.16734511543126 0 4.675887239880051 0 0 0 0.805462187404089 0 0.3494850021680094 0 KQ{[QN]|[E{I|L}]|[KN]}KN 1.602 - 318 NaN NaN 250067.3 NaN 16891 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21018 85.628 NaN 327100 35 0 11986 0.261 -1 0 87 589.3427834460477 1176.6710139588954 2 589.3433837890625 MULTI HCD FTMS 0 0 0 21015 295135.5625 0.5677301447485729 12 -0.323883056640625 3 NaN NaN 2 V 1 -1 8.4949 0 0 0.72194 0 0 762.4253607379954 312.1500643365844 1074.57542507458 0 0 0 0 0 0.5 0 0 0 V 0.72194 - 53 + NaN NaN 135432.3 NaN 16892 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21019 85.631 NaN 997900 35 0 269090 0.261 + 1328 AYPEYLITF 9 66 558.7841268391039 1115.5537007450077 2 558.7843017578125 MULTI HCD FTMS 0 0 0 21015 490822.3125 0.04774514284808231 -7 0.15985107421875 4 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 96.28474662873226 0.004361282420133734 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 74.9 0 0 6.7141 6.7141 92.426 0 0 0 10.011037044048763 48.947836874485624 10.011037044048763 18.226825097560422 0 2.7302046884880937 1.3010299956639813 0.3494850021680094 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L};[YT][{M(Oxidation (M))|F}E][VP]{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}[{M(Oxidation (M))|F}T]{I|L} 6.7141;5.0802;3.6607;2.2635;2.0268 +;-;-;-;- + 440 NaN NaN 241443 NaN 16893 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21020 85.635 NaN 740960 35 0 118470 0.261 + 27040 SYLYSPYFG 9 91 548.7510599299209 1095.4875669266416 2 548.7521362304688 MULTI HCD FTMS 0 0 0 21015 150974.34375 0.37832847812808346 -1 0.02620697021484375 5 Unmodified _SYLYSPYFG_ ENST00000371146.5_1_1:62916945-62917257:+|nuORF 26.88365393820708 0.12808753336095696 2 GY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C{I|L}[MT] 8 7 45.138 0 0 4.1204 0 0 165.07875258613439 0 165.07875258613439 0 11.291075373067294 0 0 0 2.274227503252014 0 0 0 GY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C{I|L}[MT] 4.1204 - 961 NaN NaN 206602.1 NaN 16894 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21021 85.638 NaN 297290 35 0 96952 0.261 -1 0 71 562.3436428476501 1122.6727327621002 2 562.3439331054688 MULTI HCD FTMS 0 0 0 21015 108707.0703125 0.23940580857177268 12 -0.323883056640625 6 NaN NaN 2 [YN]V[QA]TAVQ 9 -1 29.147 0 0 2.5962 0 0 0 145.17728533461892 145.17728533461892 14.542513289233273 0 0 0 0 0 2 0 0 [YN]V[QA]TAVQ 2.5962 - 422 NaN NaN 144968.7 NaN 16895 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21022 85.641 NaN 139580 35 0 21463 0.263 -1 NACCSILA 8 49 426.19119060502334 850.3678282768467 2 426.19146728515625 MULTI HCD FTMS 0 0 0 21015 63217.66796875 0.09922574999862661 8 -0.205902099609375 7 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))CSILA_ MCM7|p.R481C|1|0.11|ENSG00000166508|chr7:100095928-100095928|G/A|missense_variant 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 6.9897 0 0 0.82196 0 0 172.12171790480585 562.1396045376893 734.2613224424952 0 0 0 0 0 0 0 0 0 {I|L} 0.82196 + + 5 + NaN NaN 104351.2 NaN 16896 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21023 85.645 NaN 88792 35 0 8359.5 0.261 -1 MPDYMILQEL 10 44 634.798581292156 1267.5826096511119 2 634.7999877929688 MULTI HCD FTMS 0 0 0 21015 17757.56640625 0.2934320654043706 13 -0.3533477783203125 8 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 13.614867670302875 0.3837631382804675 2 {I|L}QE{I|L} 4 -1 41.186 0 0 3.2491 0 0 766.3026627962967 0 766.3026627962967 0 30.728050365394424 0 0 0 0.9247425010840047 0 0 0 {I|L}QE{I|L} 3.2491 + + 20 NaN NaN 109859.2 NaN 16897 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21024 85.648 NaN 188400 35 0 19052 0.264 + 30120 VGARVSRK 8 65 436.77471307099665 871.5348732087933 2 436.7745361328125 MULTI HCD FTMS 0 0 0 21015 88661.25 0.04942796756481702 -7 0.15985107421875 9 Unmodified _VGARVSRK_ REV__ENST00000558187.5_1_15:84748925-84782396:+|nuORF;REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF 0.6903765706972694 0.5409681170271811 2 A 1 -1 8.8515 0 0 1.0156 0 0 61.056091351967275 736.4355562799436 797.491647631911 0 0 0 0 0 0.4247425010840047 0 0 0 A 1.0156 + + 20 + NaN NaN 117526.4 NaN 16898 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21025 85.651 NaN 110570 35 0 27216 0.261 -1 KGVRRVQKRM 10 39 637.3862317005096 NaN 0 637.3867797851562 PEAK HCD FTMS 0 0 0 21015 18206.30078125 0.5560161638868819 1 -0.03958892822265625 10 Oxidation (M) _KGVRRVQKRM(Oxidation (M))_ ENST00000559371.5_1_15:37186957-37188981:-|nuORF 0.4007161486938917 0.3398413315442166 2 C 1 -1 5.4846 0 0 0.43092 0 0 166.34590314139638 1000.3815804207036 1166.7274835621 0 0 0 0 0 0 0 0 0 C 0.43092 - 2 + NaN NaN 110449.4 NaN 16899 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21026 85.655 NaN 92030 35 0 8483.1 0.263 -1 0 42 507.3791447856861 NaN 0 507.2562255859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 NaN NaN 2 S 1 -1 5.4846 0 0 0.54155 0 0 130.25754386649095 792.4147432916624 922.6722871581533 0 0 0 0 0 0 0 0 0 S 0.54155 - 4 + NaN NaN 100734.8 NaN 16900 4124 21015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21028 85.66 NaN 3920600 35 0 644860 0.327 + 26985 SYLPFTEAF 9 107 537.7611538764542 NaN 0 537.76123046875 PEAK HCD FTMS 0 0 0 21027 2350526 0.9354027106878775 -2 0.0657958984375 1 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 196.64828556020333 1.7577959278410596E-36 2 AET{M(Oxidation (M))|F}P{I|L} 6 8 71.169 0 0 6.6295 0 0 165.0789509503922 247.0742849856455 412.15323593603773 0 0 0 0 0 3.305462187404089 0 1.6254223615525998 0 AET{M(Oxidation (M))|F}P{I|L} 6.6295 - 2756 NaN NaN 683713.5 NaN 16901 4125 21027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21029 85.664 NaN 176110 35 0 11270 0.261 + 14835 LKEAKRFMK 9 69 575.8419496470875 1149.669346360975 2 575.8421630859375 MULTI HCD FTMS 0 0 0 21027 138600.640625 0.1316371974275779 59 -1.4227066040039062 2 Unmodified _LKEAKRFMK_ ENSG00000169621|ENST00000303795|APLF;ENST00000445692.5_1_2:68762461-68805151:+|nuORF;ENST00000529851.5_1_2:68740776-68805151:+|nuORF 3.944395688203298 0.32111559684428237 2 T{I|L} 2 9 5.5732 0 0 0.48476 0 0 166.17851491741868 766.3157442682249 932.4942591856436 0 0 0 0 0 0 0 0 0 T{I|L} 0.48476 - 28 + NaN NaN 119044.8 NaN 16902 4125 21027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21030 85.668 NaN 289160 35 0 27947 0.261 + 3770 ENYPHFFL 8 68 533.7531829696032 1065.4918130060064 2 533.75341796875 MULTI HCD FTMS 0 0 0 21027 105278.421875 1 0 0 3 Unmodified _ENYPHFFL_ ENSG00000197872|ENST00000381323|CYRIA 15.847184025352803 0.47719562709667024 2 SA{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{I|L} 6 5 66.107 0 0 6.2044 0 0 345.13218886543126 0 345.13218886543126 0 56.5030565586067 0 0 0 2.4247425010840047 0 0.8494850021680094 0 SA{M(Oxidation (M))|F}H{M(Oxidation (M))|F}{I|L} 6.2044 - 158 NaN NaN 142886.9 NaN 16903 4125 21027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21031 85.671 NaN 206530 35 0 25863 0.261 + 6807 FPSDLDLDMF 10 46 608.2654180625466 1214.516283191893 2 608.2661743164062 MULTI HCD FTMS 0 0 0 21027 86915.9765625 0.7445313785124879 5 -0.12400054931640625 4 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 56.17704186161178 0.05532499666593632 2 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 63.443 0 0 5.2238 0 0 559.2632313459 0 559.2632313459 0 53.979400086720375 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.2238 + + 61 NaN NaN 125440.2 NaN 16904 4125 21027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21032 85.674 NaN 48233 35 0 6681.8 0.262 -1 0 34 499.15752902304007 498.1502525564401 1 499.15765380859375 MULTI HCD FTMS 0 0 0 21027 72275.421875 0.8825671304047524 -1 0.03958892822265625 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 86637.3 NaN 16905 4125 21027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21033 85.678 NaN 121390 35 0 17937 0.261 + 3806 EPENRGGF 8 45 453.2097732832681 NaN 0 453.210205078125 PEAK HCD FTMS 0 0 0 21027 23503.32421875 0.5502187395408299 -34 0.8415451049804688 6 Unmodified _EPENRGGF_ ENSG00000138942|ENST00000326132|RNF185 5.760428011301431 0.38822285293237185 2 EY{I|L}{I|L} 4 7 9.6412 0 0 1.066 0 0 98.02361660662741 285.0857332818969 383.1093498885243 0 0 0 0 0 0 0 0 0 EY{I|L}{I|L} 1.066 - 22 + NaN NaN 102285.9 NaN 16906 4125 21027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21035 85.682 NaN 665840 35 0 71993 0.327 + 30162 VGVPTRAR 8 76 428.26147607306956 854.5083992129391 2 428.2615661621094 MULTI HCD FTMS 0 0 0 21034 588185.625 0.21040724831693786 -6 0.17040252685546875 1 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 8 10.837 0 0 1.2683 0 0 689.4297381795392 0 689.4297381795392 0 -4.11104478033212 -4.11104478033212 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2683 - 9 + NaN NaN 203246.4 NaN 16907 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21036 85.687 NaN 477580 35 0 71264 0.261 + 9613 HSSDSFDDAF 10 78 564.2159681703932 1126.4173834075864 2 564.2174072265625 MULTI HCD FTMS 0 0 0 21034 157111.5 0.7707609964183669 -1 0.02283477783203125 2 Unmodified _HSSDSFDDAF_ ENSG00000137200|ENST00000373451|CMTR1 6.2057823575117 0.44245551207394906 2 [Y{I|L}]SC(Carbamidomethyl (C)) 4 9 29.169 0 0 2.5895 0 0 0 600.1915282652614 600.1915282652614 5.457574905606748 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]SC(Carbamidomethyl (C)) 2.5895 - 87 NaN NaN 160274.6 NaN 16908 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21037 85.69 NaN 183620 35 0 9245.3 0.261 + 26314 SRWFILLFL 9 88 597.8559943719408 1193.6974358106816 2 597.8560791015625 MULTI HCD FTMS 0 0 0 21034 102861.2265625 0.345219868532488 14 -0.36603546142578125 3 Unmodified _SRWFILLFL_ REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF 1.844237919475145 0.33703635659052655 2 A 1 -1 7.4743 0 0 0.62614 0 0 105.08044129458592 1014.5673922174436 1119.6478335120296 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.62614 - 71 + NaN NaN 118467.3 NaN 16909 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21038 85.694 NaN 625250 35 0 65510 0.261 + -1 MCKEWCLE 8 90 578.2373706896982 NaN 0 578.2564086914062 PEAK HCD FTMS 0 0 0 21034 19092.57421875 0.4381578880134654 -1 0.02283477783203125 4 2 Carbamidomethyl (C) _MC(Carbamidomethyl (C))KEWC(Carbamidomethyl (C))LE_ REV__ENSG00000126953|ENST00000372902|TIMM8A;REV__ENST00000419283.1_1_2:162933923-162934139:-|nuORF 13.50788311687929 0.38822285293237185 2 E{I|L}{M(Oxidation (M))|F} 3 -1 17.58 0 0 1.5228 0 0 131.05713146557883 631.1852511041624 762.2423825697413 0 0 0 0 0 0 0 0.28872548999643577 0 E{I|L}{M(Oxidation (M))|F} 1.5228 - 152 + NaN NaN 188467.5 NaN 16910 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21039 85.697 NaN 199800 35 0 19024 0.261 -1 0 49 582.7996826233004 1163.5848123134008 2 582.8001708984375 MULTI HCD FTMS 0 0 0 21034 69550.21875 0.023263459692043603 17 -0.4419403076171875 5 NaN NaN 2 PT{[CA]|SS}TP{I|L}T{M(Oxidation (M))|F} 9 -1 45.596 0 0 3.9185 0 0 214.13084609199376 0 214.13084609199376 0 27.012131247412512 0 0 0 1.5484550065040281 0 0.4247425010840047 0 PT{[CA]|SS}TP{I|L}T{M(Oxidation (M))|F} 3.9185 - 175 NaN NaN 117074.6 NaN 16911 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21040 85.7 NaN 158170 35 0 8519.3 0.261 + 9586 HRVRERPL 8 65 531.817045203229 1061.6195374732579 2 531.817138671875 MULTI HCD FTMS 0 0 0 21034 80916.734375 0.4781353880335024 -5 0.1443023681640625 6 Unmodified _HRVRERPL_ REV__ENST00000505602.1_1_3:128598473-128598902:+|nuORF 7.910154910731844 0.5302565402355366 2 NN 2 -1 7.4743 0 0 0.70404 0 0 364.2690003430179 466.24103723697505 830.510037579993 0 0 0 0 0 0 0 0 0 NN 0.70404 - 191 + NaN NaN 113478.6 NaN 16912 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21041 85.704 NaN 604390 35 0 60860 0.261 + 13609 KYPENFFLL 9 79 585.8129910707257 1169.6114292082514 2 585.8133544921875 MULTI HCD FTMS 0 0 0 21034 102336.3203125 0.3440562980006514 44 -1.080230712890625 7 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 31.26834338654808 0.10542797264966089 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 32.071 0 0 2.742 0 0 631.2968617169937 0 631.2968617169937 0 16.252334295034565 0 0 0 1.1549471895720984 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 2.742 + + 90 NaN NaN 178196.9 NaN 16913 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21042 85.707 NaN 266340 35 0 43800 0.261 + 28299 TLTKEETMR 9 75 554.787112850861 1107.559672768522 2 556.3088989257812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _TLTKEETMR_ REV__ENSG00000184677|ENST00000375647|ZBTB40 6.723162845929126 0.3000504726104499 2 VVVWE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7 -1 17.154 0 0 1.5488 0 0 217.09094978381535 0 217.09094978381535 0 7.690367050877537 0 0 0 0 0 1.0021934810768762 0 VVVWE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.5488 - 196 + NaN NaN 131547.8 NaN 16914 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21043 85.71 NaN 228660 35 0 67988 0.261 + 16660 LWGPGLPNF 9 44 500.76643335291436 999.5183137726287 2 500.7662048339844 MULTI HCD FTMS 0 0 0 21034 79459.046875 0.8032463264683662 -3 0.08863067626953125 9 Unmodified _LWGPGLPNF_ ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-11|PML 21.74664581756881 0.17247014374749275 2 [YV]N 3 8 35.942 0 0 3.5959 0 0 0 620.3212518580108 620.3212518580108 17.090606190045108 0 0 0 0 0.5 2 0 0.3494850021680094 [YV]N 3.5959 - 72 NaN NaN 134324.4 NaN 16915 4126 21034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21045 85.715 NaN 1845200 35 0 330090 0.327 + 29520 TYVTILPEL 9 65 524.7999063802712 1047.5852598273423 2 524.800048828125 MULTI HCD FTMS 0 0 0 21044 739718.0625 0.8248013189028219 2 -0.04558563232421875 1 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 144.35026110057638 1.4798765981150827E-05 2 [YT]VT{I|L}{I|L}PE{I|L} 9 0 + 104.3 0 0 9.9561 9.9561 98.243 0 0 0 24.123855178835925 76.04909263460895 24.123855178835925 37.41811817498018 0 2.5189301784845295 1.5228787452803376 1.829689690656103 0 + + [YT]VT{I|L}{I|L}PE{I|L};[YT]V{I|L}{I|L}TPE{I|L} 9.9561;6.3842 +;- + 351 NaN NaN 364390.8 NaN 16916 4127 21044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21046 85.72 NaN 910240 35 0 63652 0.261 + 25634 SGRWFLAGLV 10 114 553.3108396392714 1104.6071263453427 2 553.830322265625 MULTI HCD FTMS 0 0 0 21044 46054.33984375 0.37550297554116313 4 -0.09456634521484375 2 Unmodified _SGRWFLAGLV_ ENSG00000187045|ENST00000676104|TMPRSS6;nc|ENSG00000187045|Q8IU80-5|TMPRSS6;nc|ENSG00000187045|Q8IU80|TMPRSS6 21.536976647645854 0.3096624038397699 2 {I|L}QV{I|L} 4 8 29.87 0 0 2.7041 0 0 633.3002769243745 0 633.3002769243745 0 15.265931504406467 0 0 0 1.110924374808178 0 0 0 {I|L}QV{I|L} 2.7041 - 546 NaN NaN 231159.4 NaN 16917 4127 21044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21047 85.723 NaN 195210 35 0 25242 0.261 + 23939 RTRTVLEV 8 68 487.2930777807898 972.5716026283797 2 487.29296875 MULTI HCD FTMS 0 0 0 21044 92404.9296875 0.4850130149205552 8 -0.20247650146484375 3 Unmodified _RTRTVLEV_ REV__ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;REV__ENSG00000172932|ENST00000511455|ANKRD13D;REV__ENST00000508417.5_1_11:67066841-67069800:+|nuORF;REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF;REV__ENST00000513750.5_1_11:67066841-67067513:+|nuORF;REV__nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D 2.0597508629832335 0.5389364538378849 2 {M(Oxidation (M))|F}A 2 -1 9.464 0 0 0.97309 0 0 130.11891815747964 621.3254488580686 751.4443670155483 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A 0.97309 - 59 + NaN NaN 130602.5 NaN 16918 4127 21044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21048 85.727 NaN 567980 35 0 73811 0.261 + -1 FSCCPDDRI 9 85 585.239556723427 1168.4645605136539 2 585.2400512695312 MULTI HCD FTMS 0 0 0 21044 227887.59375 0.29728040153954366 -6 0.1770782470703125 4 2 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))C(Carbamidomethyl (C))PDDRI_ REV__ENSG00000267710|ENST00000649256|EDDM13 6.723162845929126 0.3000504726104499 2 {I|L}R 2 -1 15.969 0 0 1.3667 0 0 881.2819331994197 0 881.2819331994197 0 0.039237471316297956 0 0 0 0 0 0 0 {I|L}R 1.3667 - 74 NaN NaN 197213.2 NaN 16919 4127 21044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21049 85.73 NaN 229070 35 0 42324 0.262 -1 SMVELGILL 9 59 495.7807549946593 989.5469570561186 2 495.78076171875 MULTI HCD FTMS 0 0 0 21044 63589.7421875 0.19815702835703544 -6 0.1770782470703125 5 Oxidation (M) _SM(Oxidation (M))VELGILL_ ENST00000267814.13_1_15:45335475-45335541:+|nuORF 36.04419817259434 0.08350412372117409 2 {NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]VG{I|L}{I|L}{I|L} 9 -1 + 53.082 0 0 5.3643 5.3643 89.724 0 0 0 7.15227486541373 43.389399919613965 7.15227486541373 15.457574905606748 0 1.4247425010840047 0 0.7742275032520141 0 {NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]VG{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]V[{I|L}V]A{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KG]W{[ET]|[MV]}{I|L} 5.3643;3.8022;2.5878;0.76778 -;-;-;- 109 NaN NaN 120972.4 NaN 16920 4127 21044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21050 85.733 NaN 83364 35 0 6679.4 0.261 -1 MPDYMILQEL 10 47 634.798581292156 1267.5826096511119 2 634.7982788085938 MULTI HCD FTMS 0 0 0 21044 23810.072265625 0.3934457302589971 16 -0.4091644287109375 6 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 13.614867670302875 0.3837631382804675 2 W{I|L}QE{I|L} 5 -1 43.315 0 0 3.4172 0 0 580.2209339826187 0 580.2209339826187 0 32.85789402675583 0 0 0 0.9247425010840047 0 0 0 W{I|L}QE{I|L} 3.4172 - 27 NaN NaN 107402.2 NaN 16921 4127 21044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21052 85.738 NaN 1004500 35 0 100360 0.327 + 20388 NYVGFINYL 9 62 551.782257964092 1101.5499629949838 2 551.7824096679688 MULTI HCD FTMS 0 0 0 21051 504437.5625 0.9132668198471379 -1 0.0228118896484375 1 Unmodified _NYVGFINYL_ ENSG00000092068|ENST00000316902|SLC7A8;ENST00000397310.6_1_14:23596388-23599053:-|nuORF;ENST00000528806.5_1_14:23598711-23607206:-|nuORF;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8 149.9946105101851 8.83195450578534E-06 2 [YN]VG{M(Oxidation (M))|F}{I|L}NY{I|L} 9 0 + 108.74 0 0 9.8714 9.8714 94.073 0 0 0 24.34955642535897 16.478174818886373 16.478174818886373 9.208187539523749 0 2.5994850021680094 1.5228787452803376 0 1.892159058960253 + + [YN]VG{M(Oxidation (M))|F}{I|L}NY{I|L};[YN]VG{M(Oxidation (M))|F}{I|L}GGY{I|L};[YN]VG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};[YN]VG{M(Oxidation (M))|F}{I|L}{I|L}[YN] 9.8714;9.0355;6.7792;6.7792 +;-;-;- + 788 NaN NaN 240746.6 NaN 16922 4128 21051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21053 85.742 NaN 707990 35 0 70908 0.261 -1 0 117 567.3303563093277 1132.6461596854554 2 567.3303833007812 MULTI HCD FTMS 0 0 0 21051 283153.875 0.06753551513908364 -28 0.6854019165039062 2 NaN NaN 2 Y{I|L}{I|L}T{M(Oxidation (M))|F} 5 -1 27.959 0 0 2.4684 0 0 477.29223009736785 0 477.29223009736785 0 8.406880050254518 0 0 0 0 0 0 0 Y{I|L}{I|L}T{M(Oxidation (M))|F} 2.4684 - 2375 + NaN NaN 212579.5 NaN 16923 4128 21051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21054 85.746 NaN 144100 35 0 8896 0.261 + -1 AIYAFCCPTT 10 49 602.2639768522164 NaN 0 602.27587890625 PEAK HCD FTMS 0 0 0 21051 8994.7763671875 1 0 0 3 2 Carbamidomethyl (C) _AIYAFC(Carbamidomethyl (C))C(Carbamidomethyl (C))PTT_ REV__ENSG00000271503|ENST00000651122|CCL5;REV__nc|ENSG00000271503|P13501|CCL5 4.3292370932331545 0.3364790620948225 2 {I|L}T{M(Oxidation (M))|F}Y 4 -1 22.18 0 0 1.8445 0 0 204.06511328670177 471.1623934381469 675.2275067248487 0 0 0 0 0 0 0 0.3252574989159953 0 {I|L}T{M(Oxidation (M))|F}Y 1.8445 - 70 + NaN NaN 125383.9 NaN 16924 4128 21051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21055 85.749 NaN 176460 35 0 22354 0.261 + 18396 MPQPDFSFL 9 61 541.2548138177445 1080.495074702289 2 541.2540893554688 MULTI HCD FTMS 0 0 0 21051 52775.7890625 0.5403694810676329 -4 0.118011474609375 4 Unmodified _MPQPDFSFL_ ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 24.990960013464015 0.14443998892849796 2 S{M(Oxidation (M))|F}{I|L} 3 6 36.995 0 0 3.4239 0 0 715.3007697569735 0 715.3007697569735 0 8.066884185923655 0 0 0 1 0 0.3807196863200844 0 + S{M(Oxidation (M))|F}{I|L} 3.4239 + + 64 NaN NaN 137307.7 NaN 16925 4128 21051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21056 85.753 NaN 211510 35 0 34739 0.261 + 31642 VYISSLALL 9 47 489.7971317996167 977.5797106660334 2 489.79742431640625 MULTI HCD FTMS 0 0 0 21051 37474.453125 0.0309042198482826 -5 0.14421844482421875 5 Unmodified _VYISSLALL_ ENSG00000115233|ENST00000409682|PSMD14 77.98433622928108 0.006504613272346738 2 [YV]{I|L}SS{I|L}A{I|L}{I|L} 9 0 + 64.632 0 0 6.6114 6.6114 94.544 0 0 0 2.0763456383578927 56.67280924645823 2.0763456383578927 64.63160941989898 0 2.1677353201839438 0 1.1861818737241734 0 + + [YV]{I|L}SS{I|L}A{I|L}{I|L} 6.6114 + + 185 NaN NaN 128762.2 NaN 16926 4128 21051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21057 85.756 NaN 68406 35 0 3922.6 0.261 + 22906 QYPVIIHLIW 10 45 641.3712104567475 1280.7278679802948 2 641.755126953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QYPVIIHLIW_ ENSG00000066322|ENST00000372458|ELOVL1;ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1 1.844237919475145 0.46554186016084764 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97865.6 NaN 16927 4128 21051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21059 85.761 NaN 810970 35 0 30660 0.327 -1 0 105 545.3169038290621 1088.619254724924 2 545.3170166015625 MULTI HCD FTMS 0 0 0 21058 878383.9375 0.21291229484335122 47 -1.1479568481445312 1 NaN NaN 2 Q 1 -1 13.099 0 0 1.2033 0 0 458.2729068703389 499.27463709049067 957.5475439608296 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.2033 - 99 + NaN NaN 231198.2 NaN 16928 4129 21058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21060 85.765 NaN 803590 35 0 73528 0.261 + 13205 KYLVIGDLLF 10 89 590.8521028818799 1179.6896528305597 2 590.8526000976562 MULTI HCD FTMS 0 0 0 21058 397289.84375 0.16274366858512207 9 -0.235382080078125 2 Unmodified _KYLVIGDLLF_ ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF;nc|ENSG00000108639|O43760-2|SYNGR2 47.594388314883695 0.08653821083322558 2 V{I|L}[DG]{I|L}{I|L}{M(Oxidation (M))|F} 7 3 53.599 0 0 4.5435 0 0 404.2419605939469 0 404.2419605939469 0 23.99826293799493 0 0 0 2.1861818737241734 0 0.23965182871044374 0 + V{I|L}[DG]{I|L}{I|L}{M(Oxidation (M))|F} 4.5435 + + 976 NaN NaN 224408.1 NaN 16929 4129 21058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21061 85.769 NaN 171790 35 0 15441 0.261 + 6399 FPHIDEFFTL 10 57 633.3136169575913 1264.6126809819825 2 633.31396484375 MULTI HCD FTMS 0 0 0 21058 63356.25 0.3165047287202126 -2 0.04558563232421875 3 Unmodified _FPHIDEFFTL_ ENSG00000170903|ENST00000301919|MSANTD4 27.628801355627647 0.2527626205058048 2 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L} 6 5 52.652 0 0 4.1635 0 0 462.1743336408219 0 462.1743336408219 0 47.1669877129645 0 0 0 1.274227503252014 0 0.4247425010840047 0 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L} 4.1635 - 153 NaN NaN 114311.5 NaN 16930 4129 21058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21062 85.772 NaN 225550 35 0 37786 0.261 + -1 MTGNKDMSKLI 11 42 627.3153455146822 1252.6161380961644 2 627.816162109375 MULTI HCD FTMS 0 0 0 21058 53744.41015625 1 0 0 4 Oxidation (M) _M(Oxidation (M))TGNKDMSKLI_ REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7|SLC25A25 4.189502756095605 0.4005469306127019 2 V{I|L} 2 -1 20.969 0 0 1.674 0 0 1022.4523407181255 0 1022.4523407181255 0 13.979400086720375 0 0 0 0 0 0 0 V{I|L} 1.674 - 4 NaN NaN 123430.1 NaN 16931 4129 21058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21063 85.775 NaN 161590 35 0 17331 0.264 + 6922 FPVGVFVVA 9 53 467.7734555974479 933.5323582616958 2 467.773681640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FPVGVFVVA_ ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-6|AIG1 14.581692164780916 0.23437375358055648 2 VA 2 7 24.222 0 0 2.5946 0 0 745.4163555342193 0 745.4163555342193 0 9.528937514676485 0 0 0 0.3252574989159953 0 0 0 + VA 2.5946 + + 55 NaN NaN 103863.8 NaN 16932 4129 21058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21064 85.779 NaN 287510 35 0 31039 0.261 -1 0 55 624.2670216892429 623.2597452226429 1 624.2662963867188 MULTI HCD FTMS 0 0 0 21058 24302.78125 0.7371127840215725 1 -0.02280426025390625 6 NaN NaN 2 YAY 3 -1 23.416 0 0 3.7571 0 0 0 223.07212244205314 223.07212244205314 4.189615513722202 0 0 0 0 0.3494850021680094 0 0 0 YAY 3.7571 - 42 + NaN NaN 143997.2 NaN 16933 4129 21058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21066 85.784 NaN 10314000 35 0 2976100 0.327 + 1329 AYPEYLITF 9 59 558.7841268391039 1115.5537007450077 2 558.7849731445312 MULTI HCD FTMS 0 0 0 21065 7502702.5 0.7298315367624292 -1 0.02280426025390625 1 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 115.6920309560759 0.002013163348980568 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEY{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 80.155 0 0 7.1853 7.1853 91.861 0 0 0 1.1219583558280988 43.47295930833134 1.1219583558280988 11.461280356782382 0 3.004432191740108 1.3979400086720375 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEY{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}PEY{I|L}T{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}T{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}T{I|L}{M(Oxidation (M))|F};[{I|L}T][YE][{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[EP]Y{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}[Y{M(Oxidation (M))|F}]P{[ES]|[DT]|[{I|L}C]};[{I|L}T]{I|L}{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]P{[ES]|[DT]|[{I|L}C]} 7.1853;6.1578;6.1105;5.3056;5.0831;4.2308;3.9167;3.4902;3.3959;3.1043 +;-;-;-;-;-;-;-;-;- + 623 NaN NaN 633131 NaN 16934 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21067 85.788 NaN 1158300 35 0 116490 0.263 -1 0 88 436.77471307099665 871.5348732087933 2 436.77484130859375 MULTI HCD FTMS 0 0 0 21065 1031857.625 0.5752527199876961 -1 0.02280426025390625 2 NaN NaN 2 P 1 -1 8.8515 0 0 1.0156 0 0 651.4040271167996 120.05049310855702 771.4545202253566 0 0 0 0 0 0.4247425010840047 0 0 0 P 1.0156 - 33 + NaN NaN 282110.7 NaN 16935 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21068 85.792 NaN 625610 35 0 106240 0.261 + 25855 SMDPLPVFL 9 62 517.7650946548998 1033.5156363765996 2 517.76513671875 MULTI HCD FTMS 0 0 0 21065 253037 0.7707099193547543 -1 0.02280426025390625 3 Oxidation (M) _SM(Oxidation (M))DPLPVFL_ ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ 42.09456458481378 0.05572955244001856 2 PV{M(Oxidation (M))|F}{I|L} 4 5 45.745 0 0 4.4262 0 0 559.2305448724377 0 559.2305448724377 0 40.26084705832169 0 0 0 1.3807196863200843 0 0 0 + PV{M(Oxidation (M))|F}{I|L} 4.4262 + + 80 NaN NaN 189359.1 NaN 16936 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21069 85.795 NaN 596280 35 0 96274 0.261 + 7175 FSITEHESF 9 85 548.7510599299209 1095.4875669266416 2 548.7523193359375 MULTI HCD FTMS 0 0 0 21065 173327.046875 0.4343423937728077 5 -0.13408660888671875 4 Unmodified _FSITEHESF_ ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-2|RALB;nc|ENSG00000144118|P11234-3|RALB 30.636539890814138 0.10832830463492794 2 C{I|L}CY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{M(Oxidation (M))|F} 8 6 54.998 0 0 5.0204 0 0 147.078604994028 0 147.078604994028 0 25.50357438670538 0 0 0 1.4247425010840047 0 0.5 0 C{I|L}CY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}G{M(Oxidation (M))|F} 5.0204 - 1171 + NaN NaN 183313 NaN 16937 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21070 85.798 NaN 411590 35 0 49185 0.261 + -1 ITMEDEPYFS 10 65 624.2584681920871 1246.502383450974 2 624.25927734375 MULTI HCD FTMS 0 0 0 21065 51550.9765625 0.25124642274577774 -3 0.068389892578125 5 Oxidation (M) _ITM(Oxidation (M))EDEPYFS_ REV__nc|ENSG00000197822|Q16625-7|OCLN 29.081581746732265 0.240155558137004 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{[CP]|[EA]}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 10 -1 + 70.869 0 0 5.6854 5.6854 90.083 0 0 0 4.933787369250169 52.36880000633434 4.933787369250169 14.436974992327123 0 1.7302046884880937 1.2218487496163564 0.8494850021680094 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{[CP]|[EA]}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[CP]|[EA]}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F};[EP]Y{[ES]|[DT]|[{I|L}C]}[EP]YS{M(Oxidation (M))|F};[EP]{[ES]|[DT]|[{I|L}C]}Y[EP]YS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[ET]|[MV]}[YT]SYS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}S[NG][WH]YS{M(Oxidation (M))|F} 5.6854;4.5272;3.4661;3.0833;2.9872;2.3446 -;-;-;-;-;- 358 NaN NaN 165119.6 NaN 16938 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21071 85.802 NaN 100770 35 0 8567.1 0.262 + 279 AFLSSDFLL 9 44 506.77119366419356 1011.5278343951871 2 506.771484375 MULTI HCD FTMS 0 0 0 21065 40879.734375 0.4434238252705699 -5 0.12400054931640625 6 Unmodified _AFLSSDFLL_ ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL 12.531546534597751 0.2520865569484384 2 {I|L}{I|L} 2 7 25.969 0 0 2.5673 0 0 767.3482399501646 0 767.3482399501646 0 23.494850021680094 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.5673 + + 8 NaN NaN 112939.4 NaN 16939 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21072 85.805 NaN 126270 35 0 5562.9 0.261 + 7147 FSEVEWLF 8 65 528.7560074443104 NaN 0 528.7561645507812 PEAK HCD FTMS 0 0 0 21065 29732.533203125 0.6241995387427471 -2 0.0455780029296875 7 Unmodified _FSEVEWLF_ ENST00000510312.6_1_5:73199984-73200204:+|nuORF 13.50788311687929 0.38822285293237185 2 {M(Oxidation (M))|F}DR 3 7 19.693 0 0 1.8657 0 0 131.09769496498944 503.1964510553344 634.2941460203239 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}DR 1.8657 - 50 + NaN NaN 124307.9 NaN 16940 4130 21065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21074 85.81 NaN 2299100 35 0 405860 0.327 + 26986 SYLPFTEAF 9 90 537.7611538764542 NaN 0 537.7611083984375 PEAK HCD FTMS 0 0 0 21073 1298887.25 0.516898198330043 4 -0.10791015625 1 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 180.00974506902125 1.8852553983916666E-27 2 AET{M(Oxidation (M))|F}P{I|L} 6 8 68.524 0 0 6.3831 0 0 165.07885939765782 247.07353950384348 412.15239890150133 0 0 0 0 0 3.274227503252014 0 1.392159058960253 0 AET{M(Oxidation (M))|F}P{I|L} 6.3831 - 1137 NaN NaN 442008.8 NaN 16941 4131 21073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21075 85.814 NaN 456740 35 0 33576 0.261 -1 0 93 589.3429545551332 1176.6713561770664 2 589.3429565429688 MULTI HCD FTMS 0 0 0 21073 243155.78125 0.15668785994377993 -18 0.4441680908203125 2 NaN NaN 2 {I|L}{[HG]|PP}N 4 -1 8.4164 0 0 0.71527 0 0 737.4121323121153 0 737.4121323121153 0 2.7030375612038426 0 0 0 0 0 0 0 {I|L}{[HG]|PP}N 0.71527 - 57 NaN NaN 162514 NaN 16942 4131 21073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21076 85.818 NaN 324540 35 0 69175 0.261 + 6707 FPPLYEDIM 9 66 562.7717149585533 1123.5288769839065 2 562.7726440429688 MULTI HCD FTMS 0 0 0 21073 87299.2890625 1 0 0 3 Unmodified _FPPLYEDIM_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 34.10243960390752 0.09241788333544565 2 [YN][QT][Q{I|L}]N{I|L}M 9 7 + 52.698 0 0 4.6904 4.6904 83.134 0 0 0 11.721675119240516 3.0102999566398125 3.0102999566398125 3.0102999566398125 0 1.774227503252014 2 0.2614393726401688 0 [YN][QT][Q{I|L}]N{I|L}M;[YN][QT][Q{I|L}]NM{I|L};[YN][QT][Q{I|L}]VQM;[YN]V[Q{I|L}][QT]QM;[YN]V[Q{I|L}][C(Carbamidomethyl (C))N]T{I|L};[YV]N[Q{I|L}][QT]QM;[YV]N[Q{I|L}][C(Carbamidomethyl (C))N]T{I|L} 4.6904;4.4225;4.359;4.3273;3.8118;2.9961;1.6576 -;-;-;-;-;-;- 233 NaN NaN 146414.1 NaN 16943 4131 21073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21077 85.821 NaN 183860 35 0 22790 0.261 -1 FPSDLDLDMF 10 46 608.2654180625466 1214.516283191893 2 608.2657470703125 MULTI HCD FTMS 0 0 0 21073 46052.140625 0.3944874705322643 11 -0.2950592041015625 4 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 39.94969957227396 0.1458432724694501 2 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 57.836 0 0 4.762 0 0 559.263960580501 0 559.263960580501 0 53.231661347003424 0 0 0 1.7134679910804405 0 0.4247425010840047 0 D{I|L}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.762 + + 124 NaN NaN 117108.2 NaN 16944 4131 21073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21079 85.826 NaN 1781700 35 0 198230 0.326 + 30163 VGVPTRAR 8 81 428.26147607306956 854.5083992129391 2 428.2615661621094 MULTI HCD FTMS 0 0 0 21078 2795462.75 1 0 0 1 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 5.230669730166228 0.5342319408533849 2 P 1 7 8.8515 0 0 1.0359 0 0 634.3775683797345 120.0503176324828 754.4278860122173 0 0 0 0 0 0.4247425010840047 0 0 0 + P 1.0359 + + 14 + NaN NaN 352998.3 NaN 16945 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21080 85.83 NaN 1078700 35 0 136980 0.261 -1 YADSGCKLLE 10 104 578.2731871562229 NaN 0 578.2569580078125 PEAK HCD FTMS 0 0 0 21078 25983.330078125 1 0 0 2 Carbamidomethyl (C) _YADSGC(Carbamidomethyl (C))KLLE_ ENSG00000124939|ENST00000244930|SCGB2A1 10.823927491677226 0.33092050725491123 2 S 1 -1 9.2917 0 0 0.80481 0 0 148.09994937573816 916.3758100435643 1064.4757594193024 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.80481 + + 400 + NaN NaN 268317.3 NaN 16946 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21081 85.834 NaN 360540 35 0 18353 0.261 -1 0 97 575.8429850378634 1149.6714171425267 2 575.8426513671875 MULTI HCD FTMS 0 0 0 21078 297168.3125 0.148014679023375 -24 0.5643234252929688 3 NaN NaN 2 {I|L}[{M(Oxidation (M))|F}T] 3 -1 10.458 0 0 0.90961 0 0 770.461056184182 0 770.461056184182 0 4.488474775526187 0 0 0 0 0 0 0 {I|L}[{M(Oxidation (M))|F}T] 0.90961 - 190 + NaN NaN 145773.6 NaN 16947 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21082 85.837 NaN 434620 35 0 132560 0.261 + 34162 YPDEIEYIF 9 44 594.7767698428802 1187.5389867525603 2 594.7769165039062 MULTI HCD FTMS 0 0 0 21078 279503.78125 0.4039975431644577 -3 0.06511688232421875 4 Unmodified _YPDEIEYIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 26.88365393820708 0.12808753336095696 2 EY{I|L}{M(Oxidation (M))|F} 4 5 49.24 0 0 4.1464 0 0 617.2682079694414 0 617.2682079694414 0 41.16827851303363 0 0 0 1.5 0 0.3807196863200844 0 + EY{I|L}{M(Oxidation (M))|F} 4.1464 + + 27 NaN NaN 179271.7 NaN 16948 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21083 85.84 NaN 234500 35 0 19448 0.264 + 22563 QSLKTSLT 8 61 439.2525781654612 876.4906033977225 2 439.25274658203125 MULTI HCD FTMS 0 0 0 21078 165212.234375 0.613681101219703 -1 0.01613616943359375 5 Unmodified _QSLKTSLT_ ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-7|USP54;nc|ENSG00000166348|Q70EL1-8|USP54;nc|ENSG00000166348|Q70EL1-9|USP54 2.577480529830294 0.5381683276125971 2 R 1 8 6.9897 0 0 0.79746 0 0 370.22048636250787 347.14682947330317 717.367315835811 0 0 0 0 0 0 0 0 0 R 0.79746 - 11 + NaN NaN 146657.3 NaN 16949 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21084 85.844 NaN 231090 35 0 19981 0.261 -1 0 72 597.8564615606568 1193.6983701881136 2 597.8563232421875 MULTI HCD FTMS 0 0 0 21078 121848.53125 0.14998535209516584 -17 0.42467498779296875 6 NaN NaN 2 M 1 -1 3.9794 0 0 0.33337 0 0 633.3339763285786 426.3008251055802 1059.6348014341588 0 0 0 0 0 0 0 0 0 M 0.33337 - 29 + NaN NaN 123969.3 NaN 16950 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21085 85.847 NaN 167280 35 0 24574 0.261 + 25722 SKKIRDKTS 9 76 531.817045203229 1061.6195374732579 2 531.8173217773438 MULTI HCD FTMS 0 0 0 21078 134726.859375 0.7960983557154427 1 -0.03942108154296875 7 Unmodified _SKKIRDKTS_ ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-6|ATRX 2.9952420565917617 0.3283108881486655 2 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.3756 0 0 896.5403576410298 0 896.5403576410298 0 4.158781176037891 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3756 - 136 + NaN NaN 119866.1 NaN 16951 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21086 85.85 NaN 314690 35 0 108010 0.261 -1 0 52 611.3019060655541 610.2946295989541 1 611.30078125 MULTI HCD FTMS 0 0 0 21078 138469.140625 0.28913264952229956 18 -0.5246734619140625 8 NaN NaN 2 {I|L}W 2 -1 17.078 0 0 2.7984 0 0 293.1211504503197 0 293.1211504503197 0 13.098943791441968 0 0 0 0 0 0 0 {I|L}W 2.7984 - 13 + NaN NaN 148678 NaN 16952 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21087 85.854 NaN 282050 35 0 48559 0.261 + 7248 FSWVDSATTF 10 72 580.7660947175908 1159.5176365019815 2 580.7670288085938 MULTI HCD FTMS 0 0 0 21078 94937.078125 0.6429504445541665 -1 0.01613616943359375 9 Unmodified _FSWVDSATTF_ REV__ENSG00000146904|ENST00000275815|EPHA1;REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF 13.042465956692817 0.38911719078024076 2 {I|L}[{M(Oxidation (M))|F}T] 3 -1 13.952 0 0 1.2033 0 0 780.3080855760035 0 780.3080855760035 0 4.9903275011140025 0 0 0 0.3494850021680094 0 0 0 {I|L}[{M(Oxidation (M))|F}T] 1.2033 - 88 + NaN NaN 134418.8 NaN 16953 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21088 85.857 NaN 77814 35 0 12926 0.263 + -1 SDMCNGML 8 36 472.1695733756962 942.3245938181924 2 472.1698303222656 MULTI HCD FTMS 0 0 0 21078 63593.92578125 0.59890071121838 1 -0.03942108154296875 10 Carbamidomethyl (C),Oxidation (M) _SDM(Oxidation (M))C(Carbamidomethyl (C))NGML_ REV__ENST00000439062.5_2_3:190231855-190268205:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 7.4473 0 0 0.79031 0 0 567.1101295621362 0 567.1101295621362 0 6.73393743112328 0 0 0 0 0 0 0 {I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 0.79031 - 7 + NaN NaN 103242.7 NaN 16954 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21089 85.86 NaN 1075100 35 0 154360 0.261 + 31607 VYILAMVFDM 10 79 601.303109311979 1200.591665690758 2 601.3028564453125 MULTI HCD FTMS 0 0 0 21078 137747.140625 0.02140102660641732 -8 0.205902099609375 11 Unmodified _VYILAMVFDM_ REV__ENSG00000170412|ENST00000392627|GPRC5C;REV__nc|ENSG00000170412|Q9NQ84-2|GPRC5C 26.88365393820708 0.25965138844209146 2 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 53.918 0 0 4.491 4.491 84.43 0 0 0 5.7821840590102624 21.451651955316393 5.7821840590102624 6.817496819840656 0 1.805462187404089 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDVY{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDY{I|L}V;{[QD]|[EN]|[WG]|[KD]|[RS]}ENH{[DS]|[MA]|[CV]|TT}{I|L}M{I|L};[Y{I|L}]V{[DS]|[MA]|[CV]|TT}DDYV{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}ENH{[DS]|[MA]|[CV]|TT}M{I|L}{I|L};[Y{I|L}]V{[DS]|[MA]|[CV]|TT}DDVY{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}EGGH{[DS]|[MA]|[CV]|TT}{I|L}M{I|L};[Y{I|L}]V{[DS]|[MA]|[CV]|TT}DDY{I|L}V;{[QD]|[EN]|[WG]|[KD]|[RS]}EGGH{[DS]|[MA]|[CV]|TT}M{I|L}{I|L} 4.491;3.9231;3.7388;2.4124;2.0113;1.8042;1.4434;1.3946;1.2591;0.78639 -;-;-;-;-;-;-;-;-;- 473 NaN NaN 264823.5 NaN 16955 4132 21078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21091 85.865 NaN 1105800 35 0 151710 0.327 + 29521 TYVTILPEL 9 65 524.7999063802712 1047.5852598273423 2 524.7999877929688 MULTI HCD FTMS 0 0 0 21090 468158.46875 0.5220066158388901 8 -0.21595001220703125 1 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 88.95385435242217 0.004553379958619559 2 [YT]VT{I|L}{I|L}PE{I|L} 9 0 + 78.616 0 0 7.5045 7.5045 94.667 0 0 0 20.87128018967597 61.16373455765242 20.87128018967597 26.89522864113669 0 2.1861818737241734 1.5228787452803376 0.8494850021680094 0 + + [YT]VT{I|L}{I|L}PE{I|L};[YT]V{I|L}{I|L}TPE{I|L} 7.5045;4.9372 +;- + 359 NaN NaN 258243.3 NaN 16956 4133 21090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21092 85.87 NaN 419630 35 0 55280 0.261 -1 PNMVDCVYSF 10 76 624.2584681920871 1246.502383450974 2 624.2573852539062 MULTI HCD FTMS 0 0 0 21090 205180.9375 1 0 0 2 Carbamidomethyl (C),Oxidation (M) _PNM(Oxidation (M))VDC(Carbamidomethyl (C))VYSF_ HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 20.41453444215458 0.3201613495159799 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{[CP]|[EA]}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 10 -1 + 69.614 0 0 5.5848 5.5848 89.07 0 0 0 1.6060561250048266 48.64175564946365 1.6060561250048266 11.249387366082999 0 1.774227503252014 1 0.4247425010840047 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{[CP]|[EA]}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[CP]|[EA]}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P[NG]{M(Oxidation (M))|F}{I|L}[EC]S{M(Oxidation (M))|F};MN{[VA]|[{I|L}G]}S{M(Oxidation (M))|F}{I|L}[CS]E{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}EAP[C(Carbamidomethyl (C))N]YS{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[NG]{M(Oxidation (M))|F}{I|L}[EC]S{M(Oxidation (M))|F};[EP]Y{[ES]|[DT]|[{I|L}C]}[EP]YS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WH][C(Carbamidomethyl (C))N]YS{M(Oxidation (M))|F};MN{[VA]|[{I|L}G]}S{M(Oxidation (M))|F}{[CP]|[EA]}Y{[ES]|[DT]|[{I|L}C]};MN{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}[CS]E{M(Oxidation (M))|F} 5.5848;4.6823;4.5374;3.6042;3.47;3.3157;3.0194;2.9148;2.8224;2.7962 -;-;-;-;-;-;-;-;-;- 674 NaN NaN 155538.3 NaN 16957 4133 21090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21093 85.873 NaN 298840 35 0 71261 0.263 + 31704 VYLALLPPD 9 57 500.788348143972 999.562143354744 2 500.7889099121094 MULTI HCD FTMS 0 0 0 21090 239548.15625 1 0 0 3 Unmodified _VYLALLPPD_ ENSG00000159228|ENST00000290349|CBR1;ENSG00000159231|ENST00000290354|CBR3;ENST00000530908.5_1_21:37444388-37445177:+|nuORF 16.942295170755138 0.21397866736869717 2 VY{I|L}S 4 6 57.423 0 0 5.7448 0 0 0 534.2884615533811 534.2884615533811 32.95880017344075 0 0 0 0 0.8494850021680094 2 0 0 VY{I|L}S 5.7448 - 98 + NaN NaN 150470.5 NaN 16958 4133 21090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21094 85.877 NaN 67719 35 0 4235.9 0.261 -1 LRNNGSTM 8 43 454.71699853506584 907.4194441369317 2 454.7172546386719 MULTI HCD FTMS 0 0 0 21090 39863.84375 0.739314341807618 1 -0.019500732421875 4 Oxidation (M) _LRNNGSTM(Oxidation (M))_ tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98680.3 NaN 16959 4133 21090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21095 85.88 NaN 166140 35 0 26893 0.261 + -1 MTGNKDMSKLI 11 43 627.3153455146822 1252.6161380961644 2 627.3153686523438 MULTI HCD FTMS 0 0 0 21090 48758.51953125 0.628513800416076 16 -0.45577239990234375 5 Oxidation (M) _M(Oxidation (M))TGNKDMSKLI_ REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7|SLC25A25 4.189502756095605 0.4005469306127019 2 V{I|L} 2 -1 20.969 0 0 1.674 0 0 1022.4506299310088 0 1022.4506299310088 0 15.484550065040281 0 0 0 0 0 0 0 V{I|L} 1.674 - 2 NaN NaN 109916.2 NaN 16960 4133 21090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21097 85.885 NaN 1151100 35 0 213940 0.327 + 31643 VYISSLALL 9 59 489.7971317996167 977.5797106660334 2 489.7972412109375 MULTI HCD FTMS 0 0 0 21096 839392.4375 0.6922254032889456 1 -0.0328521728515625 1 Unmodified _VYISSLALL_ ENSG00000115233|ENST00000409682|PSMD14 179.2298980043202 1.129651853483471E-12 2 [YV]{I|L}SS{I|L}A{I|L}{I|L} 9 0 + 112.8 0 0 11.539 11.539 98.603 0 0 0 19.621892823592972 54.84514353444801 19.621892823592972 35.25576261223691 0 2.805462187404089 1.3979400086720375 1.9163865622122673 0 + + [YV]{I|L}SS{I|L}A{I|L}{I|L};[YV]{I|L}SS{I|L}VVV;[{I|L}A]{I|L}S{I|L}S[YV]{I|L};[{I|L}A]{I|L}S{I|L}S{I|L}YV 11.539;7.9325;3.5124;3.2761 +;-;-;- + 415 NaN NaN 275852 NaN 16961 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21098 85.889 NaN 1292800 35 0 70620 0.261 + 400 AKFRKQERA 9 120 567.3303563093277 1132.6461596854554 2 567.3303833007812 MULTI HCD FTMS 0 0 0 21096 1043454.375 0.24887608809787806 -22 0.5386886596679688 2 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 6.2057823575117 0.30397260197431997 2 C(Carbamidomethyl (C))[WQ]{I|L}{I|L}T{M(Oxidation (M))|F} 7 9 18.605 0 0 1.6426 0 0 166.14343123047462 0 166.14343123047462 0 7.635920338726905 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C))[WQ]{I|L}{I|L}T{M(Oxidation (M))|F} 1.6426 - 870 + NaN NaN 304018.4 NaN 16962 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21099 85.893 NaN 974550 35 0 89238 0.261 + -1 FSCCPDDRI 9 96 585.239556723427 1168.4645605136539 2 585.2401123046875 MULTI HCD FTMS 0 0 0 21096 374702.0625 0.48880054313046684 1 -0.0328521728515625 3 2 Carbamidomethyl (C) _FSC(Carbamidomethyl (C))C(Carbamidomethyl (C))PDDRI_ REV__ENSG00000267710|ENST00000649256|EDDM13 9.38312468134398 0.279288223203164 2 QD{M(Oxidation (M))|F}N 4 -1 22.907 0 0 1.9605 0 0 646.2740473957089 0 646.2740473957089 0 1.795517911651885 0 0 0 0 0 0 0 QD{M(Oxidation (M))|F}N 1.9605 - 727 NaN NaN 247971.1 NaN 16963 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21100 85.896 NaN 845420 35 0 158070 0.261 + 6786 FPQYVMDVL 9 82 556.2780471237653 1110.5415413143305 2 556.279052734375 MULTI HCD FTMS 0 0 0 21096 344682.8125 0.49788529036360835 -1 0.019500732421875 4 Unmodified _FPQYVMDVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 78.7280429016045 0.006263961847259105 2 {I|L}EQVMDV{I|L} 8 3 75.359 0 0 6.7858 0 0 165.04536635566564 0 165.04536635566564 0 43.01758674175081 0 0 0 1.8494850021680094 0 0.6694451763165201 0.566901560044258 {I|L}EQVMDV{I|L} 6.7858 - 794 NaN NaN 226170.4 NaN 16964 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21101 85.9 NaN 514520 35 0 125660 0.261 + 9947 IDSGMLLLI 9 53 495.7807549946593 989.5469570561186 2 495.78045654296875 MULTI HCD FTMS 0 0 0 21096 274906.84375 0.8566589729502017 1 -0.0328521728515625 5 Oxidation (M) _IDSGM(Oxidation (M))LLLI_ REV__ENSG00000135476|ENST00000257934|ESPL1;REV__ENST00000535123.6_1_12:53673494-53681766:+|nuORF;REV__nc|ENSG00000135476|Q14674-2|ESPL1 60.38955033654506 0.017036522530421875 2 {NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]VG{I|L}{I|L}{I|L} 9 -1 + 65.454 0 0 6.6146 6.6146 87.561 0 0 0 15.228787452803374 16.478174818886373 15.228787452803374 6.305971595366842 0 1.305462187404089 1.6989700043360187 1.1307196863200843 0 {NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]VG{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{I|L}{I|L};{[TV]|[{I|L}S]}[{M(Oxidation (M))|F}E]VG{I|L}{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}T]V[{I|L}V]A{I|L};{[TV]|[{I|L}S]}[{M(Oxidation (M))|F}E]V[{I|L}V]A{I|L} 6.6146;5.9773;5.0756;3.6847;2.1457 -;-;-;-;- 154 NaN NaN 160063.3 NaN 16965 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21102 85.903 NaN 344020 35 0 15724 0.261 + 28839 TVGLEFVVEI 10 97 553.3108396392714 1104.6071263453427 2 553.8306274414062 MULTI HCD FTMS 0 0 0 21096 6554.34521484375 0.053440699383552594 11 -0.30507659912109375 6 Unmodified _TVGLEFVVEI_ REV__ENSG00000145384|ENST00000274024|FABP2 9.38312468134398 0.42334543440173333 2 QV{I|L} 3 -1 13.302 0 0 1.2042 0 0 746.3837757794937 0 746.3837757794937 0 8.697887582883938 0 0 0 0.25 0 0 0 QV{I|L} 1.2042 - 222 NaN NaN 145620.7 NaN 16966 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21103 85.906 NaN 188280 35 0 46620 0.261 + 23974 RVQAPRLRQ 9 53 562.3436428476501 1122.6727327621002 2 562.3433227539062 MULTI HCD FTMS 0 0 0 21096 48156.1015625 0.1060542833055178 22 -0.5791702270507812 7 Unmodified _RVQAPRLRQ_ REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF 0.5247636613948944 0.34703895399870666 2 {I|L}DEY 4 -1 11.771 0 0 1.0485 0 0 148.1966718263564 451.2341402643188 599.4308120906752 0 0 0 0 0 0 0 0 0 {I|L}DEY 1.0485 - 32 + NaN NaN 113617.6 NaN 16967 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21104 85.909 NaN 152160 35 0 34009 0.264 -1 0 43 404.1210594303247 806.2275659274494 2 404.1212158203125 MULTI HCD FTMS 0 0 0 21096 21317.119140625 0.30810696199079785 -7 0.16962432861328125 8 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.6738 0 0 641.1488591176823 0 641.1488591176823 0 2.8084876632699682 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6738 - 11 + NaN NaN 109954.4 NaN 16968 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21105 85.913 NaN 64745 35 0 4279.8 0.261 + 30186 VHLIQNAII 9 44 510.8124084472656 NaN 0 510.8124084472656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _VHLIQNAII_ ENSG00000099840|ENST00000395301|IZUMO4;ENST00000478879.5_1_19:2096872-2098127:+|nuORF;ENST00000497445.5_1_19:2096872-2097684:+|nuORF;ENST00000498554.5_1_19:2097388-2099029:+|nuORF;ENST00000588003.5_1_19:2097070-2098323:+|nuORF;ENST00000590985.2_1_19:2096914-2098127:+|nuORF;ENST00000591894.5_1_19:2096998-2098450:+|nuORF;nc|ENSG00000099840|Q1ZYL8-2|IZUMO4;nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;nc|ENSG00000099840|Q1ZYL8-4|IZUMO4 7.910154910731844 0.25691533546754686 2 GA 2 8 14.464 0 0 1.42 0 0 646.3695251447282 241.1556795709594 887.5252047156876 0 0 0 0 0 0.5 0 0 0 GA 1.42 - 19 + NaN NaN 103770 NaN 16969 4134 21096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21107 85.918 NaN 587160 35 0 18533 0.327 -1 0 88 545.3169038290621 1088.619254724924 2 545.317138671875 MULTI HCD FTMS 0 0 0 21106 576187.5625 0.13966263606917545 53 -1.2665557861328125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2396 0 0 923.5407310206257 0 923.5407310206257 0 1.4608280609188284 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2396 - 218 + NaN NaN 186531.4 NaN 16970 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21108 85.922 NaN 172010 35 0 14936 0.261 -1 0 62 582.7996826233004 1163.5848123134008 2 582.80029296875 MULTI HCD FTMS 0 0 0 21106 71009.3515625 0.023751516781999656 26 -0.6768951416015625 2 NaN NaN 2 T{M(Oxidation (M))|F}W[{I|L}T]W 6 -1 29.213 0 0 2.5106 0 0 311.1842518537125 0 311.1842518537125 0 13.015384402724592 0 0 0 0 0 0.3807196863200844 0 T{M(Oxidation (M))|F}W[{I|L}T]W 2.5106 - 74 NaN NaN 122517.7 NaN 16971 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21109 85.926 NaN 121140 35 0 16167 0.261 -1 WPMSTPSFI 9 53 541.2548138177445 1080.495074702289 2 541.2545166015625 MULTI HCD FTMS 0 0 0 21106 61915.265625 0.6339482658672168 3 -0.0784912109375 3 Oxidation (M) _WPM(Oxidation (M))STPSFI_ ENST00000460734.5_1_21:46553558-46554689:+|nuORF 15.847184025352803 0.2234401846867398 2 S{M(Oxidation (M))|F}{I|L} 3 -1 40.445 0 0 3.7432 0 0 715.2994251935562 0 715.2994251935562 0 29.503187623076954 0 0 0 1 0 0.4247425010840047 0 S{M(Oxidation (M))|F}{I|L} 3.7432 + + 39 NaN NaN 99696.6 NaN 16972 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21110 85.929 NaN 187410 35 0 11740 0.261 + -1 YINYCMSLF 9 48 605.7669319778347 1209.5193110224693 2 605.7676391601562 MULTI HCD FTMS 0 0 0 21106 81103.1875 0.7558236791370343 -1 0.0328521728515625 4 Carbamidomethyl (C) _YINYC(Carbamidomethyl (C))MSLF_ REV__ENSG00000174804|ENST00000531380|FZD4 9.38312468134398 0.279288223203164 2 YP 2 -1 20.969 0 0 1.7337 0 0 0 946.3787628112426 946.3787628112426 -5.228787452803374 0 -5.228787452803374 0 0 0 0 0 0 YP 1.7337 - 18 + NaN NaN 104055.7 NaN 16973 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21111 85.932 NaN 111720 35 0 26700 0.261 + 21795 QAIVDAEWNIL 11 40 636.3349817100526 1270.655410486905 2 636.3355712890625 MULTI HCD FTMS 0 0 0 21106 43280.1484375 0.7833389186536974 2 -0.05567169189453125 5 Unmodified _QAIVDAEWNIL_ ENSG00000135624|ENST00000258091|CCT7;ENST00000479109.2_1_5:92225632-92225905:-|nuORF;nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-4|CCT7 8.444304893310646 0.381886813817475 2 WN{I|L}{I|L} 4 7 32.607 0 0 2.5662 0 0 726.3558750936404 0 726.3558750936404 0 32.6072158606037 0 0 0 0.3054621874040891 0 0 0 + WN{I|L}{I|L} 2.5662 + + 8 NaN NaN 98677.4 NaN 16974 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21112 85.936 NaN 166650 35 0 17970 0.264 + 17833 MHPGFGPPP 9 44 468.7231837673846 935.4318146015693 2 468.2750549316406 MULTI HCD FTMS 0 0 0 21106 52610.21484375 0.8725501139810319 2 -0.05567169189453125 6 Unmodified _MHPGFGPPP_ REV__ENSG00000086589|ENST00000199814|RBM22;REV__ENST00000520132.1_1_5:150071315-150073858:-|nuORF;REV__nc|ENSG00000086589|Q9NW64-2|RBM22 2.302733041254933 0.33356062215410776 2 Q 1 -1 7.3464 0 0 0.78535 0 0 396.2853435095755 408.07062708072505 804.3559705903006 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.78535 - 6 + NaN NaN 129990.5 NaN 16975 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21113 85.939 NaN 145760 35 0 34194 0.261 + 12538 KSGGGFRV 8 43 404.22776986456097 NaN 0 404.22802734375 PEAK HCD FTMS 0 0 0 21106 11120.6767578125 0.2659798253230884 -17 0.44135284423828125 7 Unmodified _KSGGGFRV_ ENST00000429422.5_2_3:47893928-47894003:-|nuORF 2.302733041254933 0.38822285293237185 2 Q 1 8 2.2185 0 0 0.2751 0 0 438.2582608211157 237.10466943912346 675.3629302602392 0 0 0 0 0 0 0 0 0 Q 0.2751 - 2 + NaN NaN 124309.6 NaN 16976 4135 21106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21115 85.944 NaN 5799900 35 0 1675300 0.327 + 1330 AYPEYLITF 9 58 558.7841268391039 1115.5537007450077 2 558.7847900390625 MULTI HCD FTMS 0 0 0 21114 3741838 0.3639903591880465 5 -0.13739013671875 1 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 107.99703571036002 0.003269392969029945 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 76.973 0 0 6.9 6.9 88.799 0 0 0 6.147255951564077 41.48325926497115 6.147255951564077 8.04953742795611 0 2.7302046884880937 1.3010299956639813 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[EP]YAY{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T][YE][{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][YE][VP]{I|L}T{M(Oxidation (M))|F};[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[EP]Y{I|L}{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F} 6.9;6.1784;5.1951;3.895;2.6853;2.3662;1.8094 +;-;-;-;-;-;- + 391 NaN NaN 489909.8 NaN 16977 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21116 85.948 NaN 652750 35 0 70632 0.263 -1 0 83 436.77471307099665 871.5348732087933 2 436.77484130859375 MULTI HCD FTMS 0 0 0 21114 766772.8125 0.4274699680619608 5 -0.13739013671875 2 NaN NaN 2 P 1 -1 9.6041 0 0 1.102 0 0 651.4040271167996 120.05017267398671 771.4541997907863 0 0 0 0 0 0.5 0 0 0 P 1.102 - 30 + NaN NaN 187535.8 NaN 16978 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21117 85.952 NaN 598820 35 0 77501 0.261 + 26987 SYLPFTEAF 9 74 537.7611538764542 NaN 0 537.760986328125 PEAK HCD FTMS 0 0 0 21114 231094.0625 0.09196495273244107 9 -0.2460174560546875 3 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 123.45060196383646 3.899424348984226E-09 2 AET{M(Oxidation (M))|F}P{I|L} 6 8 60.853 0 0 5.6686 0 0 165.08131968823005 247.07203670646808 412.1533563946981 0 0 0 0 0 2.973197507588033 0 0.75 0 AET{M(Oxidation (M))|F}P{I|L} 5.6686 - 502 + NaN NaN 179078.9 NaN 16979 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21118 85.955 NaN 130190 35 0 11952 0.261 + 26902 SYLCNVTLF 9 59 530.2623769257581 1058.510200918316 2 530.2632446289062 MULTI HCD FTMS 0 0 0 21114 53301.2421875 0.6410133570149978 1 -0.0294647216796875 4 Unmodified _SYLCNVTLF_ ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF 43.77239144664712 0.04802738721622131 2 NVT{I|L}{M(Oxidation (M))|F} 5 4 52.691 0 0 4.9778 0 0 466.1879485763223 0 466.1879485763223 0 47.2062251842808 0 0 0 1.774227503252014 0 0 0 + NVT{I|L}{M(Oxidation (M))|F} 4.9778 + + 126 + NaN NaN 116798 NaN 16980 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21119 85.959 NaN 114980 35 0 16316 0.261 -1 RGANLCVM 8 43 468.7231837673846 935.4318146015693 2 468.7230224609375 MULTI HCD FTMS 0 0 0 21114 20275.267578125 0.3362690513397622 3 -0.08172607421875 5 Carbamidomethyl (C),Oxidation (M) _RGANLC(Carbamidomethyl (C))VM(Oxidation (M))_ ENSG00000188596|ENST00000524981|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF;nc|ENSG00000188596|Q96N23-2|CFAP54 0.7936320650641473 0.540814922690045 2 Q 1 -1 8.8515 0 0 0.94625 0 0 396.2855876502005 408.0710848443969 804.3566724945974 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.94625 - 6 + NaN NaN 109038.9 NaN 16981 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21120 85.962 NaN 140050 35 0 9913.7 0.261 + 17914 MILELDPTF 9 54 547.7762334466955 NaN 0 547.775634765625 PEAK HCD FTMS 0 0 0 21114 50839.40234375 0.40242670823040416 47 -1.1085128784179688 6 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 42.09456458481378 0.07155800144855468 2 D 1 8 16.99 0 0 1.5536 0 0 615.3325744599941 360.1553701779987 975.4879446379928 0 0 0 0 0 1 0 0 0 + D 1.5536 + + 29 + NaN NaN 113845.5 NaN 16982 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21121 85.965 NaN 128370 35 0 18863 0.261 -1 MVIVILFP 8 47 487.2930777807898 972.5716026283797 2 487.2929382324219 MULTI HCD FTMS 0 0 0 21114 32420.7421875 0.17016929689248525 17 -0.4750823974609375 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MVIVILFP_ nc|ENSG00000121904|Q7Z408-2|CSMD2 2.8892196856762586 0.5377058178582064 2 [YV]{I|L} 3 -1 25.686 0 0 2.6411 0 0 0 594.3328503537626 594.3328503537626 13.212112250009653 0 0 0 0 0 1.5228787452803376 0 0 [YV]{I|L} 2.6411 - 15 NaN NaN 99120 NaN 16983 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21122 85.969 NaN 118270 35 0 12537 0.261 + -1 LWHCMEEYD 9 63 621.2319031205609 1240.4492533079217 2 621.2318725585938 MULTI HCD FTMS 0 0 0 21114 40482.53515625 0.8634487547285008 -2 0.05905914306640625 8 Oxidation (M) _LWHCM(Oxidation (M))EEYD_ REV__ENSG00000197535|ENST00000399233|MYO5A;REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A;REV__nc|ENSG00000197535|Q9Y4I1|MYO5A 2.0597508629832335 0.3354026079994024 2 E{M(Oxidation (M))|F}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 6 -1 17.625 0 0 1.4208 0 0 425.1940174787125 0 425.1940174787125 0 13.020468848809376 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 1.4208 - 44 NaN NaN 108530.3 NaN 16984 4136 21114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21124 85.973 NaN 933490 35 0 104090 0.327 + 30164 VGVPTRAR 8 74 428.26147607306956 854.5083992129391 2 428.26153564453125 MULTI HCD FTMS 0 0 0 21123 923826.0625 0.330473393895161 5 -0.13147735595703125 1 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 5.230669730166228 0.5342319408533849 2 P 1 7 8.9794 0 0 1.0508 0 0 634.3775683797345 120.0503405206664 754.4279089004009 0 0 0 0 0 0.5 0 0 0 + P 1.0508 + + 10 + NaN NaN 233619.1 NaN 16985 4137 21123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21125 85.978 NaN 676910 35 0 37094 0.261 -1 0 101 575.8429850378634 1149.6714171425267 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21123 783861.3125 0.39042850697120995 -19 0.4970245361328125 2 NaN NaN 2 D 1 -1 10.995 0 0 0.95635 0 0 61.053313079505706 970.5414912925411 1031.5948043720468 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95635 - 109 + NaN NaN 191731 NaN 16986 4137 21123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21126 85.981 NaN 620820 35 0 24861 0.261 -1 0 113 589.3429545551332 1176.6713561770664 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21123 612895.875 0.39494575258888875 -12 0.31375885009765625 3 NaN NaN 2 N 1 -1 7.4913 0 0 0.63666 0 0 106.06261851839243 953.5166441582833 1059.5792626766756 0 0 0 0 0 0.28872548999643577 0 0 0 N 0.63666 - 106 + NaN NaN 195674.4 NaN 16987 4137 21123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21127 85.985 NaN 694200 35 0 50477 0.261 + 35269 YVTEAEDSIE 10 108 578.2564030604839 1154.4982531877677 2 578.7713012695312 MULTI HCD FTMS 0 0 0 21123 33692.9609375 0.10802712323806812 8 -0.216552734375 4 Unmodified _YVTEAEDSIE_ ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK 14.838274106304384 0.3723198072575719 2 K{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4 9 30.79 0 0 2.6669 0 0 613.2098143223365 0 613.2098143223365 0 3.279451039999614 0 0 0 0 0 0.4247425010840047 0 K{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 2.6669 - 1497 + NaN NaN 203252.1 NaN 16988 4137 21123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21128 85.988 NaN 257440 35 0 14007 0.261 + -1 YVLYMWDLP 9 73 608.2932812829504 1214.5720096327007 2 608.2935791015625 MULTI HCD FTMS 0 0 0 21123 60039.2265625 0.475290702708426 -3 0.08852386474609375 5 Oxidation (M) _YVLYM(Oxidation (M))WDLP_ REV__ENSG00000115486|ENST00000233838|GGCX;REV__ENST00000481541.1_1_2:85786016-85788551:-|nuORF;REV__ENST00000496962.1_1_2:85786016-85788551:-|nuORF;REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;REV__nc|ENSG00000115486|P38435-2|GGCX 24.67388899826682 0.14717941214954053 2 {I|L}{[DA]|[EG]}TY{I|L}M{I|L} 8 -1 40.054 0 0 3.2978 0 0 276.11018569160314 0 276.11018569160314 0 20.501896823007826 0 0 0 1.9177353201839438 0 0.3252574989159953 0 {I|L}{[DA]|[EG]}TY{I|L}M{I|L} 3.2978 - 383 NaN NaN 133236.3 NaN 16989 4137 21123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21129 85.991 NaN 106120 35 0 8808.1 0.262 + 32178 VYSTFGFSF 9 50 527.747595139372 1053.480637345544 2 527.747802734375 MULTI HCD FTMS 0 0 0 21123 27905.8984375 0.43263457487818524 4 -0.1079254150390625 6 Unmodified _VYSTFGFSF_ ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}P 2 8 17.959 0 0 1.7047 0 0 0 806.3881319635374 806.3881319635374 12.272437815030626 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P 1.7047 - 12 + NaN NaN 102057.6 NaN 16990 4137 21123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21131 85.996 NaN 6249700 35 0 998970 0.327 + -1 FSYAMLPLPF 10 103 601.303109311979 1200.591665690758 2 601.3038330078125 MULTI HCD FTMS 0 0 0 21130 5035575 0.7823499933620484 -2 0.05228424072265625 1 Oxidation (M) _FSYAM(Oxidation (M))LPLPF_ REV__PROX1|p.P492S|1|0.2|ENSG00000117707|chr1:213998009-213998009|C/T|missense_variant 39.957323273324995 0.14577711486213385 2 VY{I|L}EE{[CA]|SS}YV{I|L} 10 -1 + 70.965 0 0 5.9108 5.9108 87.101 0 0 0 39.335295873671754 9.131806016604358 9.131806016604358 8.04953742795611 0 2.274227503252014 1.6989700043360187 1.110924374808178 0 VY{I|L}EE{[CA]|SS}YV{I|L};VY[WD]M{I|L}YV{I|L};VY[WD][YV]M{I|L}{I|L};[YV]{I|L}[YV][WD]M{I|L};VY[WD][YV]{I|L}M{I|L};VY[WD]MVY{I|L}{I|L};[Y{I|L}]V[YV][WD]M{I|L};[YV]P[HA]{M(Oxidation (M))|F}NE[KP];[YV]P[HA]{M(Oxidation (M))|F}GGE[KP];{M(Oxidation (M))|F}{M(Oxidation (M))|F}VVY{[DA]|[EG]}PM{I|L} 5.9108;5.2403;4.161;4.0532;3.9362;3.7812;3.1734;2.2774;1.514;1.4376 -;-;-;-;-;-;-;-;-;- 1379 + NaN NaN 863361.7 NaN 16991 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21132 86.001 NaN 680260 35 0 244140 0.261 + 34163 YPDEIEYIF 9 50 594.7767698428802 1187.5389867525603 2 594.7769165039062 MULTI HCD FTMS 0 0 0 21130 527664.125 0.7626909702711697 3 -0.08510589599609375 2 Unmodified _YPDEIEYIF_ ENSG00000112715|ENST00000672860|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA 26.88365393820708 0.12808753336095696 2 EY{I|L}{M(Oxidation (M))|F} 4 5 49.24 0 0 4.1464 0 0 617.2680504121064 0 617.2680504121064 0 47.0217596488785 0 0 0 1.5 0 0.3807196863200844 0 + EY{I|L}{M(Oxidation (M))|F} 4.1464 + + 18 NaN NaN 202202.1 NaN 16992 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21133 86.004 NaN 395370 35 0 20608 0.261 -1 0 97 597.8564615606568 1193.6983701881136 2 597.856689453125 MULTI HCD FTMS 0 0 0 21130 295720.4375 0.36400712823671383 -11 0.28096771240234375 3 NaN NaN 2 D 1 -1 7.2185 0 0 0.60472 0 0 105.08009006225514 970.5441988580686 1075.6242889203238 0 0 0 0 0 0.3252574989159953 0 0.3252574989159953 0 D 0.60472 - 135 + NaN NaN 165211.4 NaN 16993 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21134 86.007 NaN 1045300 35 0 204590 0.261 + 34139 YPAEWQDFL 9 96 584.7689173150094 1167.5232816968187 2 584.7694702148438 MULTI HCD FTMS 0 0 0 21130 273273.03125 0.8789881833094775 -1 0.02281951904296875 4 Unmodified _YPAEWQDFL_ ENSG00000048162|ENST00000614830|NOP16 49.55428908609986 0.03219431099695407 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]WQD{M(Oxidation (M))|F}{I|L} 9 2 + 65.186 0 0 5.5833 5.5833 89.231 0 0 0 13.389399919613965 48.07319389984244 13.389399919613965 11.822581265925436 0 1.75 1.3979400086720375 0 0.2614393726401688 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]WQD{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]W[AG]D{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}[TP]WQD{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}WQD{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}D]|MM}[TP]W[AG]D{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}W[AG]D{M(Oxidation (M))|F}{I|L};[MN][KS]{[DA]|[EG]}QD{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QG]|[NA]}[NS]QD{M(Oxidation (M))|F}{I|L};E[YT]QW[TP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};E{M(Oxidation (M))|F}W{[DS]|[MA]|[CV]|TT}Q{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.5833;4.5707;4.2351;3.9773;3.2225;2.9647;2.531;2.4161;1.9769;0.88226 -;-;-;+;-;-;-;-;-;- + 853 NaN NaN 251166.4 NaN 16994 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21135 86.011 NaN 598280 35 0 51382 0.261 + 29522 TYVTILPEL 9 62 524.7999063802712 1047.5852598273423 2 524.7998657226562 MULTI HCD FTMS 0 0 0 21130 154552.4375 0.17232924373757055 13 -0.38055419921875 5 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 36.12702656103203 0.08312389501731911 2 {I|L}[EP]{I|L} 4 5 21.427 0 0 2.0453 0 0 577.3109178054693 0 577.3109178054693 0 6.091896990114233 0 0 0 1 0 0 0 + {I|L}[EP]{I|L} 2.0453 + + 63 NaN NaN 205458.2 NaN 16995 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21136 86.014 NaN 250090 35 0 23164 0.261 + -1 VYIFMMLAGY 10 67 612.2935928876961 1222.5726328421922 2 612.8101196289062 MULTI HCD FTMS 0 0 0 21130 18641.0234375 0.6105775957229774 -1 0.02281951904296875 6 Oxidation (M) _VYIFM(Oxidation (M))MLAGY_ REV__tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1 12.531546534597751 0.39389615866941496 2 [YV]{I|L} 3 -1 35.942 0 0 2.9399 0 0 0 844.3346978211391 844.3346978211391 11.701877825604967 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [YV]{I|L} 2.9399 + + 49 + NaN NaN 127155.1 NaN 16996 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21137 86.017 NaN 92132 35 0 7043 0.261 + 14232 LCAFAYPNQKD 11 37 635.3006344592907 NaN 0 635.1640625 PEAK HCD FTMS 0 0 0 21130 9276.20703125 0.39257497675051417 4 -0.1086578369140625 7 Unmodified _LCAFAYPNQKD_ ENSG00000121570|ENST00000335658|DPPA4 2.498486711656943 0.3350326561941647 2 EQ{I|L} 3 10 11.682 0 0 0.9209 0 0 132.09625193489325 763.2799166315061 895.3761685663994 0 0 0 0 0 0 0 0 0 EQ{I|L} 0.9209 - 16 + NaN NaN 105715.4 NaN 16997 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21138 86.021 NaN 45272 35 0 3477.7 0.261 -1 ACCDHEDDCC 10 30 642.67138671875 NaN 0 642.67138671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 3 Carbamidomethyl (C) _AC(Carbamidomethyl (C))C(Carbamidomethyl (C))DHEDDC(Carbamidomethyl (C))C_ ENSG00000198854|ENST00000368775|C1orf68 0 0.34018428902965525 2 Q 1 -1 1.9897 0 0 0.15504 0 0 476.71900742011854 675.5348604791624 1152.253867899281 0 0 0 0 0 0 0 0 0 Q 0.15504 - 2 + NaN NaN 90449.5 NaN 16998 4138 21130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21140 86.026 NaN 596080 35 0 104170 0.326 + 31644 VYISSLALL 9 70 489.7971317996167 977.5797106660334 2 489.7972412109375 MULTI HCD FTMS 0 0 0 21139 394614.625 0.325428554905632 6 -0.1642913818359375 1 Unmodified _VYISSLALL_ ENSG00000115233|ENST00000409682|PSMD14 146.00731375242447 1.3047045798573153E-05 2 [YV]{I|L}SS{I|L}A{I|L}{I|L} 9 0 + 100.68 0 0 10.299 10.299 99.662 0 0 0 13.953650195120844 13.953650195120844 13.953650195120844 92.8333694029903 0 2.8494850021680094 1.3010299956639813 1.5356668758921828 0 + + [YV]{I|L}SS{I|L}A{I|L}{I|L};[{I|L}A]{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}{I|L}[YV] 10.299;0.8031 +;- + 262 NaN NaN 173980 NaN 16999 4139 21139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21141 86.03 NaN 147340 35 0 18342 0.261 + -1 VYMMVTTMLL 10 46 617.2995432622648 1232.5845335913295 2 617.2988891601562 MULTI HCD FTMS 0 0 0 21139 74149.6640625 0.8242250775471724 1 -0.02285003662109375 2 2 Oxidation (M) _VYM(Oxidation (M))M(Oxidation (M))VTTMLL_ REV__ENST00000505992.1_1_4:99806121-99806199:-|nuORF 14.838274106304384 0.3723198072575719 2 [YV]{I|L} 3 -1 37.447 0 0 3.0381 0 0 0 854.3461967595514 854.3461967595514 16.478174818886373 0 0 0 0 1 1.6989700043360187 0 0 [YV]{I|L} 3.0381 - 24 NaN NaN 118884.1 NaN 17000 4139 21139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21142 86.034 NaN 138570 35 0 35241 0.263 + 31705 VYLALLPPD 9 40 500.788348143972 999.562143354744 2 500.78851318359375 MULTI HCD FTMS 0 0 0 21139 46674.26171875 0.19484291780580132 6 -0.1642913818359375 3 Unmodified _VYLALLPPD_ ENSG00000159228|ENST00000290349|CBR1;ENSG00000159231|ENST00000290354|CBR3;ENST00000530908.5_1_21:37444388-37445177:+|nuORF 11.640296217721598 0.25978676193971967 2 VY{I|L}S 4 6 46.402 0 0 4.6422 0 0 0 534.2894381158811 534.2894381158811 23.68562527100117 0 0 0 0 0.5 1.6989700043360187 0 0 VY{I|L}S 4.6422 - 44 + NaN NaN 109918.6 NaN 17001 4139 21139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21143 86.037 NaN 177280 35 0 54432 0.261 -1 PLILMSIIF 9 56 531.817045203229 1061.6195374732579 2 531.8178100585938 MULTI HCD FTMS 0 0 0 21139 62816.76953125 0.3711830526383043 8 -0.2233734130859375 4 Oxidation (M) _PLILM(Oxidation (M))SIIF_ tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3756 0 0 896.5409222162251 0 896.5409222162251 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3756 + + 72 + NaN NaN 113597.4 NaN 17002 4139 21139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21144 86.04 NaN 102290 35 0 10974 0.261 + 4981 FAWCFLLI 8 51 506.77119366419356 1011.5278343951871 2 506.7707824707031 MULTI HCD FTMS 0 0 0 21139 33951.4453125 0.3682724456042484 4 -0.0987548828125 5 Unmodified _FAWCFLLI_ REV__ENSG00000171435|ENST00000339824|KSR2 11.114462752807354 0.5120171699125776 2 {I|L}{I|L} 2 -1 25.969 0 0 2.5673 0 0 767.349065016276 0 767.349065016276 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.5673 + + 6 NaN NaN 102765.3 NaN 17003 4139 21139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21145 86.044 NaN 65072 35 0 4517.8 0.261 -1 MPDYMILQEL 10 33 634.798581292156 1267.5826096511119 2 634.7991943359375 MULTI HCD FTMS 0 0 0 21139 10580.81640625 0.17484100809318281 25 -0.6269989013671875 6 Oxidation (M) _M(Oxidation (M))PDYMILQEL_ ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF 4.897010918128616 0.4493830473644964 2 {I|L}QE{I|L} 4 -1 25.918 0 0 2.0446 0 0 766.3051624982437 0 766.3051624982437 0 25.9176003468815 0 0 0 0 0 0 0 {I|L}QE{I|L} 2.0446 + + 9 NaN NaN 99603.1 NaN 17004 4139 21139 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21147 86.049 NaN 1877400 35 0 81711 0.327 + 21167 PPQLAAPGRRA 11 136 567.3303563093277 1132.6461596854554 2 567.3307495117188 MULTI HCD FTMS 0 0 0 21146 1787182.375 0.4262639257298384 -16 0.42845916748046875 1 Unmodified _PPQLAAPGRRA_ REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF 4.897010918128616 0.3974440401582579 2 Q 1 -1 12.985 0 0 1.1464 0 0 634.3785950862108 367.19693096853337 1001.5755260547442 0 0 0 0 0 0.75 0 0 0 Q 1.1464 + + 782 + NaN NaN 380185.6 NaN 17005 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21148 86.053 NaN 970520 35 0 123610 0.261 + 6787 FPQYVMDVL 9 95 556.2780471237653 1110.5415413143305 2 556.2784423828125 MULTI HCD FTMS 0 0 0 21146 497247.1875 0.7182605321549798 5 -0.14144134521484375 2 Unmodified _FPQYVMDVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 62.57269311338072 0.013982455292112035 2 {I|L}EQVMDV{I|L} 8 3 73.397 0 0 6.6091 0 0 165.04583937812657 0 165.04583937812657 0 24.789784572998173 0 0 0 1.7302046884880937 0 0.5752574989159953 0.2742275032520141 {I|L}EQVMDV{I|L} 6.6091 - 2021 NaN NaN 239132.9 NaN 17006 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21149 86.056 NaN 742100 35 0 45832 0.261 -1 0 97 545.3169038290621 1088.619254724924 2 545.3169555664062 MULTI HCD FTMS 0 0 0 21146 387233.21875 0.09386181796344599 58 -1.3712387084960938 3 NaN NaN 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}{I|L}QA 7 -1 23.765 0 0 2.183 0 0 0 279.1465715562021 279.1465715562021 0.25949017073103064 0 0 0 0 0.4247425010840047 0.9208187539523752 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}{I|L}QA 2.183 - 482 NaN NaN 205290.1 NaN 17007 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21150 86.06 NaN 257420 35 0 11215 0.261 + 30392 VLLTAPPVLPS 11 79 553.8433387537334 NaN 0 553.8303833007812 PEAK HCD FTMS 0 0 0 21146 14242.72265625 1 0 0 4 Unmodified _VLLTAPPVLPS_ REV__ENSG00000131831|ENST00000451717|RAI2;REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2 5.296884461304476 0.3270944076746277 2 Q 1 -1 5.4846 0 0 0.49604 0 0 563.3786469736796 411.22377260154184 974.6024195752213 0 0 0 0 0 0 0 0 0 Q 0.49604 - 58 + NaN NaN 127851 NaN 17008 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21151 86.063 NaN 215350 35 0 55653 0.261 -1 SMVELGILL 9 44 495.7807549946593 989.5469570561186 2 495.7803649902344 MULTI HCD FTMS 0 0 0 21146 179877.53125 0.560530611298915 7 -0.20052337646484375 5 Oxidation (M) _SM(Oxidation (M))VELGILL_ ENST00000267814.13_1_15:45335475-45335541:+|nuORF 36.04419817259434 0.08350412372117409 2 VG{I|L}{I|L}{I|L} 5 -1 51.454 0 0 5.1997 0 0 476.20823867011876 0 476.20823867011876 0 47.47425010840047 0 0 0 1.5 0 0 0 VG{I|L}{I|L}{I|L} 5.1997 - 39 NaN NaN 122421.5 NaN 17009 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21152 86.066 NaN 342910 35 0 31982 0.261 -1 WPSLLGDML 9 49 524.2626190548416 1046.510685176483 2 524.2625732421875 MULTI HCD FTMS 0 0 0 21146 120180.6953125 0.6231444765954358 5 -0.14144134521484375 6 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 20.453626601364224 0.18364154288633264 2 {M(Oxidation (M))|F}{I|L} 2 -1 25.969 0 0 2.4815 0 0 768.3806335378033 0 768.3806335378033 0 18.521825181113627 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{I|L} 2.4815 + + 27 NaN NaN 152787.7 NaN 17010 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21153 86.07 NaN 969660 35 0 51329 0.261 + 7885 FYTQLLQEL 9 125 577.8076546758195 1153.600756418439 2 578.3211059570312 MULTI HCD FTMS 0 0 0 21146 119111.703125 1 0 0 7 Unmodified _FYTQLLQEL_ ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540|SMG7;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant 63.227496030279354 0.01306643085373406 2 [{M(Oxidation (M))|F}T]YQ{I|L}{I|L}QE{I|L} 9 2 + 36.749 0 0 3.1856 3.1856 82.596 0 0 0 0.8365573730620355 17.118543366778134 0.8365573730620355 5.806496007348166 0 1.6791746928241125 0.958607314841775 0.2614393726401688 0.4793036574208875 [{M(Oxidation (M))|F}T]YQ{I|L}{I|L}QE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YK]T{I|L}QE{I|L};[{M(Oxidation (M))|F}T]YGA{I|L}{I|L}QE{I|L};[{M(Oxidation (M))|F}T]YVAA{I|L}QE{I|L};{[QN]|[E{I|L}]|[KN]}[TA]HT{I|L}QE{I|L};[{M(Oxidation (M))|F}T]YQ{I|L}{I|L}[AG]E{I|L};[Y{M(Oxidation (M))|F}]TQ{I|L}{I|L}QE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[Q{I|L}]TYQE{I|L};[Y{M(Oxidation (M))|F}][Q{I|L}]T{I|L}QE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YK]T{I|L}[AG]E{I|L} 3.1856;2.6822;2.6413;2.5272;2.4965;2.3873;2.3847;2.2278;2.1912;1.884 -;-;-;-;-;-;+;-;-;- + 1775 NaN NaN 256163.3 NaN 17011 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21154 86.073 NaN 188030 35 0 27468 0.261 + 19648 NVIAIYEVL 9 57 517.29983274552 1032.58511255784 2 516.7845458984375 MULTI HCD FTMS 0 0 0 21146 19479.337890625 0.5179395403687046 3 -0.07590484619140625 8 Unmodified _NVIAIYEVL_ ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;nc|ENSG00000171634|Q12830|BPTF 13.90604991867851 0.24021115267848145 2 V[RH]YEV{I|L} 7 4 18.759 0 0 1.8167 0 0 118.11100669277091 0 118.11100669277091 0 11.769403919028818 0 0 0 0.7302046884880937 0 0.3252574989159953 0 V[RH]YEV{I|L} 1.8167 - 74 + NaN NaN 128776.4 NaN 17012 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21155 86.076 NaN 190910 35 0 48808 0.262 -1 0 40 404.1210594303247 806.2275659274494 2 404.1209411621094 MULTI HCD FTMS 0 0 0 21146 67921.96875 0.9817101131697686 -1 0.02285003662109375 9 NaN NaN 2 A 1 -1 0.71334 0 0 0.088478 0 0 628.9791508657291 103.19000421695546 732.1691550826846 0 0 0 0 0 0 0 0 0 A 0.088478 - 6 + NaN NaN 117215.8 NaN 17013 4140 21146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21157 86.081 NaN 267050 35 0 20369 0.327 + 5623 FLYYPDPVL 9 74 563.7948819642692 1125.5752109953382 2 563.79541015625 MULTI HCD FTMS 0 0 0 21156 71075.84375 1 0 0 1 Unmodified _FLYYPDPVL_ ENSG00000114554|ENST00000393409|PLXNA1 48.345845343767074 0.03388484103555672 2 [Y{I|L}]{M(Oxidation (M))|F}YPDPV{I|L} 9 2 + 54.98 0 0 4.8846 4.8846 90.227 0 0 0 20.457574905606748 31.33523728866662 20.457574905606748 27.087812277826572 0 1.5629529932484498 1.6989700043360187 0 0 [Y{I|L}]{M(Oxidation (M))|F}YPDPV{I|L};[Y{I|L}]{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{[WT]|[RM]}{I|L} 4.8846;2.4781 -;- 445 NaN NaN 137951.6 NaN 17014 4141 21156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21158 86.086 NaN 131000 35 0 13994 0.261 -1 MYPDLSELLM 10 42 622.2830665275991 1242.551580121998 2 622.283203125 MULTI HCD FTMS 0 0 0 21156 34270.1015625 0.6850736775771925 1 -0.02355194091796875 2 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 22.736283301280096 0.29844449404982915 2 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 52.898 0 0 4.2572 0 0 0 162.02299389023838 162.02299389023838 37.8976719887757 0 0 0 0 1.305462187404089 1.6989700043360187 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 4.2572 - 56 NaN NaN 100248.1 NaN 17015 4141 21156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21159 86.089 NaN 102910 35 0 11343 0.261 -1 PNMVDCVYSF 10 55 624.2584681920871 1246.502383450974 2 624.7610473632812 MULTI HCD FTMS 0 0 0 21156 34875.9296875 0.2402861115530832 8 -0.2398223876953125 3 Carbamidomethyl (C),Oxidation (M) _PNM(Oxidation (M))VDC(Carbamidomethyl (C))VYSF_ HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant 10.799506525563784 0.4100970765206026 2 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 6 -1 56.802 0 0 4.5569 0 0 484.14439589668126 0 484.14439589668126 0 51.317117558728626 0 0 0 1.613982988912431 0 0 0 {I|L}{M(Oxidation (M))|F}SYS{M(Oxidation (M))|F} 4.5569 - 44 NaN NaN 105606.4 NaN 17016 4141 21156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21160 86.093 NaN 158500 35 0 20455 0.261 + -1 QIMARDGDIEL 11 49 638.8139931505516 1275.613433367903 2 638.813720703125 MULTI HCD FTMS 0 0 0 21156 49068.86328125 0.5666028839955263 -5 0.13739013671875 4 Oxidation (M) _QIM(Oxidation (M))ARDGDIEL_ REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1 8.97624648632007 0.3788720818291249 2 RPGME{I|L} 6 -1 36.956 0 0 2.8971 0 0 574.2387562482437 0 574.2387562482437 0 32.00704680132773 0 0 0 1.242992819099939 0 0 0 RPGME{I|L} 2.8971 - 45 NaN NaN 120259.7 NaN 17017 4141 21156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21161 86.097 NaN 62595 35 0 13028 0.264 -1 PEPMTMAL 8 31 453.2097732832681 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 21156 19631.556640625 0.4595796853881621 -18 0.48748016357421875 5 Oxidation (M) _PEPM(Oxidation (M))TMAL_ ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;PDXDC1-ATP2A1|1|fusion;PDXDC1-ATP2A1|2|fusion 2.302733041254933 0.38822285293237185 2 E 1 -1 6.9897 0 0 0.77285 0 0 98.02133992415493 674.316080411162 772.337420335317 0 0 0 0 0 0 0 0 0 E 0.77285 + + 1 + NaN NaN 115464 NaN 17018 4141 21156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21162 86.1 NaN 38808 35 0 4400 0.261 + 28470 TPLYELEALMS 11 35 633.8152465820312 NaN 0 633.8152465820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _TPLYELEALMS_ REV__ENSG00000174197|ENST00000703841|MGA;REV__MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;REV__nc|ENSG00000174197|Q8IWI9-3|MGA;REV__nc|ENSG00000174197|Q8IWI9|MGA 1.1933415558491238 0.338734977139133 2 V 1 -1 1.7827 0 0 0.14097 0 0 655.1884491193374 507.32087122135005 1162.5093203406875 0 0 0 0 0 0 0 0 0 V 0.14097 - 1 + NaN NaN 95386.3 NaN 17019 4141 21156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21164 86.105 NaN 1220100 35 0 319050 0.327 + 1331 AYPEYLITF 9 77 558.7841268391039 1115.5537007450077 2 558.7846069335938 MULTI HCD FTMS 0 0 0 21163 453221.125 0.044087456506764995 11 -0.31414031982421875 1 Unmodified _AYPEYLITF_ ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15;KPNA1-PARP14|1|fusion;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15 107.99703571036002 0.003269392969029945 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 71.647 0 0 6.4226 6.4226 91.792 0 0 0 10.391362274856917 41.9812969097282 10.391362274856917 17.25772496747986 0 2.7302046884880937 1.2218487496163564 0.3252574989159953 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]Y{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T][YE][{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{[QS]|[NT]}[RH]{NN|[MP]|[D{I|L}]|[EV]};[PS]{[QN]|[E{I|L}]|[KN]}{I|L}{[QS]|[NT]}{M(Oxidation (M))|F}[VP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YQ]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{[ES]|[DT]|[{I|L}C]} 6.4226;4.8755;3.0786;1.1315;0.2809;0.0086381 +;-;-;-;-;- + 814 NaN NaN 281450.5 NaN 17020 4142 21163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21165 86.109 NaN 441900 35 0 58111 0.263 + 30165 VGVPTRAR 8 63 428.26147607306956 854.5083992129391 2 428.26165771484375 MULTI HCD FTMS 0 0 0 21163 270078.3125 0.09661309652578987 10 -0.2913665771484375 2 Unmodified _VGVPTRAR_ ENST00000436072.6_1_7:37955747-37956332:-|nuORF 2.302733041254933 0.5385759549224092 2 P 1 7 8.9794 0 0 1.0508 0 0 634.3775531209454 120.0501955621703 754.4277486831157 0 0 0 0 0 0.5 0 0 0 + P 1.0508 + + 3 + NaN NaN 161156.4 NaN 17021 4142 21163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21166 86.113 NaN 181290 35 0 18767 0.261 + 11713 KAVARTAR 8 71 436.77471307099665 871.5348732087933 2 436.774658203125 MULTI HCD FTMS 0 0 0 21163 115070.140625 0.06415072174700259 11 -0.31414031982421875 3 Unmodified _KAVARTAR_ ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant 2.302733041254933 0.5385759549224092 2 Q 1 8 8.8515 0 0 1.0156 0 0 523.343571794534 217.10808740787346 740.4516592024074 0 0 0 0 0 0.4247425010840047 0 0 0 Q 1.0156 - 19 + NaN NaN 114466.4 NaN 17022 4142 21163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21167 86.116 NaN 210240 35 0 17505 0.261 + 18768 NAAMVFEFL 9 54 529.254893442135 1056.4952339510698 2 529.2543334960938 MULTI HCD FTMS 0 0 0 21163 55152.22265625 0.5991993992629818 -1 0.02355194091796875 4 Oxidation (M) _NAAM(Oxidation (M))VFEFL_ ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1 47.748688679222035 0.03472022231463587 2 V{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L} 5 4 54.821 0 0 5.1889 0 0 403.15193373847814 0 403.15193373847814 0 38.36696871556164 0 0 0 1.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L} 5.1889 + + 83 NaN NaN 128177.9 NaN 17023 4142 21163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21168 86.12 NaN 58389 35 0 3978.3 0.261 + -1 IFVRWINCY 9 37 635.8212975972805 NaN 0 635.346923828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _IFVRWINC(Carbamidomethyl (C))Y_ REV__ENST00000402198.5_1_3:9518747-9519122:+|nuORF 2.0597508629832335 0.2852655770354268 2 Q{I|L} 2 -1 9.464 0 0 0.74541 0 0 262.17523572014835 763.2800387018186 1025.455274421967 0 0 0 0 0 0 0 0 0 Q{I|L} 0.74541 - 4 + NaN NaN 105963.8 NaN 17024 4142 21163 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21170 86.124 NaN 3241600 35 0 531140 0.327 + 31608 VYILAMVFDM 10 84 601.303109311979 1200.591665690758 2 601.3037109375 MULTI HCD FTMS 0 0 0 21169 2196443.5 0.341249521185786 3 -0.09506988525390625 1 Unmodified _VYILAMVFDM_ REV__ENSG00000170412|ENST00000392627|GPRC5C;REV__nc|ENSG00000170412|Q9NQ84-2|GPRC5C 34.10243960390752 0.1965851268881605 2 VY[WD]M{I|L}YV{I|L} 9 -1 + 63.884 0 0 5.3211 5.3211 84.466 0 0 0 3.9144127238045456 3.9144127238045456 3.9144127238045456 3.9144127238045456 0 2.274227503252014 1.6989700043360187 0.6861818737241735 0 VY[WD]M{I|L}YV{I|L};[YV]{[YC]|[HE]}{[TV]|[{I|L}S]}P{I|L}M{I|L};VY{I|L}P{[TV]|[{I|L}S]}{[YC]|[HE]}M{I|L};[YV]{[YC]|[HE]}{[TV]|[{I|L}S]}PM{I|L}{I|L};[YV]{I|L}[YV][WD]M{I|L};VY[WD][YV]{I|L}M{I|L};[YV]{I|L}{I|L}{[MG]|[TS]}{[{M(Oxidation (M))|F}D]|MM}M{I|L};VY{[{M(Oxidation (M))|F}D]|MM}{[MG]|[TS]}{I|L}{I|L}M{I|L};[Y{I|L}]V[YV][WD]M{I|L};[YV]{I|L}{I|L}{[MG]|[TS]}DDY{I|L} 5.3211;4.995;4.9147;4.6556;4.0165;3.9362;3.4593;3.379;3.3067;3.2239 -;-;-;-;-;-;-;-;-;- 860 + NaN NaN 534066.4 NaN 17025 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21171 86.129 NaN 948530 35 0 39822 0.261 -1 0 112 589.3429545551332 1176.6713561770664 2 589.3431396484375 MULTI HCD FTMS 0 0 0 21169 1178972 0.7597211905223336 -6 0.1510162353515625 2 NaN NaN 2 {I|L}{[HG]|PP}N 4 -1 9.169 0 0 0.77923 0 0 737.4119740216812 0 737.4119740216812 0 1.4266750356873121 0 0 0 0.4247425010840047 0 0 0 {I|L}{[HG]|PP}N 0.77923 - 218 NaN NaN 237659.2 NaN 17026 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21172 86.132 NaN 999710 35 0 52428 0.261 -1 0 118 575.8429850378634 1149.6714171425267 2 575.8428344726562 MULTI HCD FTMS 0 0 0 21169 923769.25 0.4601143637426479 -13 0.3407745361328125 3 NaN NaN 2 D 1 -1 10.264 0 0 0.8928 0 0 61.052475833467334 970.5450191834835 1031.597495016951 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.8928 - 220 + NaN NaN 255431.8 NaN 17027 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21173 86.136 NaN 461650 35 0 66052 0.261 + 20285 NYNAVFNLL 9 58 534.2797424123494 1066.5449318914987 2 534.2796630859375 MULTI HCD FTMS 0 0 0 21169 188714.96875 0.9361238827209678 -3 0.07590484619140625 4 Unmodified _NYNAVFNLL_ ENSG00000186532|ENST00000305513|SMYD4;SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 103.74828524460852 0.00396301343438984 2 [YN]NAV{M(Oxidation (M))|F}N{I|L}{I|L} 9 0 + 87.674 0 0 8.2204 8.2204 92.359 0 0 0 16.064921830680703 16.064921830680703 16.064921830680703 9.208187539523749 0 2.517220322351953 1.3979400086720375 0 1.566901560044258 + + [YN]NAV{M(Oxidation (M))|F}N{I|L}{I|L};[YN]NAV{M(Oxidation (M))|F}GG{I|L}{I|L};[YN]GGAV{M(Oxidation (M))|F}N{I|L}{I|L};[YN]GGAV{M(Oxidation (M))|F}GG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}RR{[QS]|[NT]}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}[KA][TP][YN];{[QV]|[N{I|L}]|[RA]|[KV]}[MT]RR[YN] 8.2204;7.357;5.8507;4.6345;1.5783;0.42758;0.011564 +;-;-;-;-;-;- + 159 NaN NaN 171496.1 NaN 17028 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21174 86.139 NaN 570550 35 0 144650 0.261 + -1 DCNDLTMIFN 10 66 629.7604462626906 NaN 0 629.7741088867188 PEAK HCD FTMS 0 0 0 21169 11332.296875 0.44946067919337873 2 -0.0655364990234375 5 Carbamidomethyl (C),Oxidation (M) _DC(Carbamidomethyl (C))NDLTM(Oxidation (M))IFN_ REV__ENST00000393913.7_1_2:75719495-75719630:-|nuORF 13.90604991867851 0.3282826376286837 2 N{I|L}{M(Oxidation (M))|F}N 4 -1 33.36 0 0 2.6529 0 0 165.05995181173859 601.1923922174436 766.2523440291823 0 0 0 0 0 0 0 0 1.4916440611282626 N{I|L}{M(Oxidation (M))|F}N 2.6529 - 193 + NaN NaN 187690.6 NaN 17029 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21175 86.142 NaN 347480 35 0 24869 0.261 -1 FPSDLDLDMF 10 82 608.2654180625466 1214.516283191893 2 608.7825927734375 MULTI HCD FTMS 0 0 0 21169 17503.5859375 0.20125745768867412 23 -0.560333251953125 6 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 8.745405648335112 0.42901288225909884 2 [YV]{I|L}Y 4 -1 22.396 0 0 1.844 0 0 0 673.2138772979407 673.2138772979407 6.365006360318684 0 0 0 0 0 1.5228787452803376 0 0 [YV]{I|L}Y 1.844 - 144 NaN NaN 145581.6 NaN 17030 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21176 86.146 NaN 150950 35 0 40889 0.261 + 28651 TRRRKQAF 8 43 531.817045203229 1061.6195374732579 2 531.81787109375 MULTI HCD FTMS 0 0 0 21169 27067.791015625 0.1599430434313744 12 -0.32666778564453125 7 Unmodified _TRRRKQAF_ REV__ENSG00000136895|ENST00000373387|GARNL3;REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3;REV__nc|ENSG00000136895|Q5VVW2-3|GARNL3;REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6004 0 0 896.5405102289204 0 896.5405102289204 0 6.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6004 + + 5 + NaN NaN 113625.4 NaN 17031 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21177 86.149 NaN 86752 35 0 10919 0.261 + 3353 EEPFFEYEAS 10 46 624.2584681920871 1246.502383450974 2 624.7615356445312 MULTI HCD FTMS 0 0 0 21169 28229.2578125 0.19449226594312907 10 -0.2946014404296875 8 Unmodified _EEPFFEYEAS_ REV__ENSG00000182670|ENST00000418766|TTC3;REV__ENST00000472398.5_1_21:38529111-38558109:+|nuORF;REV__nc|ENSG00000182670|P53804-2|TTC3;REV__nc|ENSG00000182670|P53804-3|TTC3 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F}{I|L}SYS{M(Oxidation (M))|F} 6 -1 50.266 0 0 4.0326 0 0 484.14607436347814 0 484.14607436347814 0 42.96388461952553 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{I|L}SYS{M(Oxidation (M))|F} 4.0326 - 48 NaN NaN 107816.4 NaN 17032 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21178 86.152 NaN 133670 35 0 10696 0.261 -1 MILELDPTF 9 58 547.7753183229396 1093.536083712679 2 547.7755737304688 MULTI HCD FTMS 0 0 0 21169 45689.546875 0.7411669104584256 -18 0.46477508544921875 9 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 32.30548876998284 0.10066689432505688 2 D[TP]{M(Oxidation (M))|F} 4 -1 35.445 0 0 3.2413 0 0 615.3303780015448 0 615.3303780015448 0 8.010299956639813 0 0 0 1.5 0 0.4247425010840047 0 D[TP]{M(Oxidation (M))|F} 3.2413 + + 35 + NaN NaN 117395.7 NaN 17033 4143 21169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21180 86.157 NaN 1169900 35 0 123250 0.327 + 4636 EYNAFFYSL 9 106 577.2634165063122 1152.5122800794243 2 577.263427734375 MULTI HCD FTMS 0 0 0 21179 501529.28125 0.9218445211122696 1 -0.032745361328125 1 Unmodified _EYNAFFYSL_ ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000491292.5_1_2:128018779-128018920:-|nuORF 163.03601447609117 7.615514112917802E-09 2 A{M(Oxidation (M))|F}{M(Oxidation (M))|F}YS{I|L} 6 3 62.937 0 0 5.4608 0 0 406.150110745243 0 406.150110745243 0 41.67735320183944 0 0 0 2.4604093769761874 0 1.3807196863200843 0 + A{M(Oxidation (M))|F}{M(Oxidation (M))|F}YS{I|L} 5.4608 + + 661 + NaN NaN 277709 NaN 17034 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21181 86.162 NaN 645000 35 0 34268 0.261 -1 0 102 597.8564615606568 1193.6983701881136 2 597.856689453125 MULTI HCD FTMS 0 0 0 21179 479591.90625 0.5903375295785358 -5 0.1315460205078125 2 NaN NaN 2 D 1 -1 8.0154 0 0 0.67147 0 0 105.0802364423899 970.5427950494749 1075.6230314918648 0 0 0 0 0 0.3494850021680094 0 0.3807196863200844 0 D 0.67147 - 144 + NaN NaN 191377.5 NaN 17035 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21182 86.165 NaN 657500 35 0 190050 0.261 + 34140 YPAEWQDFL 9 81 584.7689173150094 1167.5232816968187 2 584.7691040039062 MULTI HCD FTMS 0 0 0 21179 142939.125 0.4597665610575918 5 -0.1639404296875 3 Unmodified _YPAEWQDFL_ ENSG00000048162|ENST00000614830|NOP16 31.26834338654808 0.10542797264966089 2 WQD{M(Oxidation (M))|F}{I|L} 5 4 50.701 0 0 4.3426 0 0 460.19505507636876 0 460.19505507636876 0 35.34895040242027 0 0 0 1.4247425010840047 0 0 0 + WQD{M(Oxidation (M))|F}{I|L} 4.3426 + + 287 NaN NaN 180329.2 NaN 17036 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21183 86.168 NaN 479380 35 0 54083 0.261 + 6788 FPQYVMDVL 9 84 556.2780471237653 1110.5415413143305 2 555.7731323242188 MULTI HCD FTMS 0 0 0 21179 192385.328125 0.752893196961317 3 -0.091827392578125 4 Unmodified _FPQYVMDVL_ ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;nc|ENSG00000100201|Q92841-3|DDX17 17.11289562659939 0.2125047172822487 2 VDM{[QV]|[N{I|L}]|[RA]|[KV]}E{I|L}{M(Oxidation (M))|F} 8 8 41.962 0 0 3.7785 0 0 131.094350007493 0 131.094350007493 0 14.50486518677451 0 0 0 1.0114393726401687 0 0.4247425010840047 0 VDM{[QV]|[N{I|L}]|[RA]|[KV]}E{I|L}{M(Oxidation (M))|F} 3.7785 - 786 + NaN NaN 162545.9 NaN 17037 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21184 86.172 NaN 649040 35 0 109240 0.261 + 15965 LPPWLQDPEL 10 62 604.3212583886041 1206.627963844008 2 604.3211059570312 MULTI HCD FTMS 0 0 0 21179 261671.265625 0.3920386817394151 -4 0.10869598388671875 5 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 31.26834338654808 0.2211790902911672 2 [EP]D{I|L}Q 5 7 35.117 0 0 2.9103 0 0 0 621.3404021587143 621.3404021587143 8.919015023391886 0 0 0 0 0 1.6989700043360187 0.3054621874040891 0.23965182871044374 [EP]D{I|L}Q 2.9103 - 103 NaN NaN 192998.5 NaN 17038 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21185 86.175 NaN 207580 35 0 44857 0.261 + 4307 EVREGDHSFI 10 53 594.7883907856494 NaN 0 594.7760009765625 PEAK HCD FTMS 0 0 0 21179 18150.328125 0.8733449923834619 3 -0.091827392578125 6 Unmodified _EVREGDHSFI_ ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 5.296884461304476 0.3356508900602619 2 {I|L}YE 3 9 12.703 0 0 1.0697 0 0 165.10293214424013 614.2466524713499 779.34958461559 0 0 0 0 0 0 0 0 0 {I|L}YE 1.0697 - 9 + NaN NaN 121377.1 NaN 17039 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21186 86.178 NaN 669580 35 0 51061 0.261 + 31687 VYKSSVEMAI 10 91 563.7948819642692 1125.5752109953382 2 563.7826538085938 MULTI HCD FTMS 0 0 0 21179 31482.212890625 0.4429382928095736 3 -0.091827392578125 7 Unmodified _VYKSSVEMAI_ REV__ENSG00000111799|ENST00000322507|COL12A1;REV__nc|ENSG00000111799|Q99715-4|COL12A1 19.256988751693697 0.33098864134661865 2 VEQWVGP{M(Oxidation (M))|F} 8 -1 42.121 0 0 3.7421 0 0 165.10472555783366 0 165.10472555783366 0 -2.2969624387961574 -2.2969624387961574 0 0 0 0 0.3807196863200844 0 VEQWVGP{M(Oxidation (M))|F} 3.7421 - 5402 + NaN NaN 193260.1 NaN 17040 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21187 86.182 NaN 349820 35 0 39353 0.261 + 26988 SYLPFTEAF 9 63 537.7611538764542 NaN 0 537.7617797851562 PEAK HCD FTMS 0 0 0 21179 67942.7421875 0.027038129003361423 17 -0.43741607666015625 8 Unmodified _SYLPFTEAF_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 41.8396318013385 0.07237558272173583 2 AET 3 8 23.232 0 0 2.1641 0 0 165.08106698044975 604.2769231558469 769.3579901362966 0 0 0 0 0 1.305462187404089 0 0 0 AET 2.1641 - 75 + NaN NaN 150205.7 NaN 17041 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21188 86.185 NaN 326490 35 0 23934 0.261 -1 FPSDLDLDMF 10 79 608.2654180625466 1214.516283191893 2 608.7857666015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _FPSDLDLDM(Oxidation (M))F_ ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3 8.745405648335112 0.42901288225909884 2 [YV]{I|L}Y 4 -1 18.416 0 0 1.5164 0 0 0 673.2142671779415 673.2142671779415 4.973024840566467 0 0 0 0 0 1.5228787452803376 0 0 [YV]{I|L}Y 1.5164 - 132 NaN NaN 139191.4 NaN 17042 4144 21179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21190 86.19 NaN 2218700 35 0 100820 0.327 + 401 AKFRKQERA 9 129 567.3303563093277 1132.6461596854554 2 567.33056640625 MULTI HCD FTMS 0 0 0 21189 2630316 0.6273611690412992 -11 0.30507659912109375 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 2 Q 1 8 12.034 0 0 1.0625 0 0 634.3790372940722 367.1968210302338 1001.575858324306 0 0 0 0 0 0.6549471895720985 0 0 0 + Q 1.0625 + + 826 + NaN NaN 407110.8 NaN 17043 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21191 86.194 NaN 542520 35 0 197330 0.261 -1 0 68 584.3563254708603 1166.6980980085204 2 584.3562622070312 MULTI HCD FTMS 0 0 0 21189 193551.734375 0.3072772854982058 -18 0.474700927734375 2 NaN NaN 2 {M(Oxidation (M))|F}DQQ 4 -1 21.938 0 0 1.8804 0 0 130.27056002199544 515.1911104791624 645.4616705011579 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}DQQ 1.8804 - 106 + NaN NaN 181520 NaN 17044 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21192 86.198 NaN 126320 35 0 15822 0.262 + 31735 VYLLSSALI 9 40 489.7971317996167 977.5797106660334 2 489.797119140625 MULTI HCD FTMS 0 0 0 21189 56092.4375 0.046257993800304494 12 -0.31018829345703125 3 Unmodified _VYLLSSALI_ REV__ENSG00000095539|ENST00000210633|SEMA4G;REV__nc|ENSG00000095539|Q9NTN9|SEMA4G 36.04419817259434 0.08350412372117409 2 M{[WT]|[RM]}A{I|L}{I|L} 6 -1 40.891 0 0 4.1828 0 0 244.17837721992345 0 244.17837721992345 0 33.90092514408778 0 0 0 1 0 0.8494850021680094 0 M{[WT]|[RM]}A{I|L}{I|L} 4.1828 - 37 NaN NaN 103087 NaN 17045 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21193 86.201 NaN 125240 35 0 26483 0.261 + -1 LGPCGACER 9 37 510.22303678975896 1018.431520646318 2 510.2231750488281 MULTI HCD FTMS 0 0 0 21189 78551.03125 0.3333733422069036 -12 0.32457733154296875 4 2 Carbamidomethyl (C) _LGPC(Carbamidomethyl (C))GAC(Carbamidomethyl (C))ER_ REV__ENST00000249842.7_2_15:74466072-74466324:+|nuORF 1.844237919475145 0.33703635659052655 2 T 1 -1 0.088644 0 0 0.008704 0 0 640.6794587340117 273.68149744205317 914.360956176065 0 0 0 0 0 0 0 0 0 T 0.008704 - 11 + NaN NaN 111595.7 NaN 17046 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21194 86.205 NaN 244130 35 0 28955 0.261 + 29523 TYVTILPEL 9 48 524.7999063802712 1047.5852598273423 2 524.8003540039062 MULTI HCD FTMS 0 0 0 21189 63049.0234375 0.07030099753280654 20 -0.48542022705078125 5 Unmodified _TYVTILPEL_ ENSG00000114127|ENST00000392981|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 37.97399986684836 0.07464525285885698 2 {I|L}[EP]{I|L} 4 5 23.188 0 0 2.2134 0 0 577.3106427036325 0 577.3106427036325 0 2.385606273598313 0 0 0 1 0 0 0 + {I|L}[EP]{I|L} 2.2134 + + 53 NaN NaN 123455.8 NaN 17047 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21195 86.208 NaN 105800 35 0 37607 0.261 + -1 WCSPHKIFY 9 34 619.2949276382463 1236.5753023432926 2 619.2947998046875 MULTI HCD FTMS 0 0 0 21189 48488.48046875 1 0 0 6 Carbamidomethyl (C) _WC(Carbamidomethyl (C))SPHKIFY_ REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF 0.6014990680409731 0.3464572424761564 2 G 1 -1 6.9897 0 0 0.56525 0 0 159.0549909192676 1017.4981232877601 1176.5531142070276 0 0 0 0 0 0 0 0 0 G 0.56525 - 3 + NaN NaN 125165 NaN 17048 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21196 86.211 NaN 69185 35 0 6249.9 0.261 -1 ARFCDSSGNSF 11 39 624.2584681920871 1246.502383450974 2 624.25830078125 MULTI HCD FTMS 0 0 0 21189 6640.26806640625 0.032362987260481986 12 -0.31018829345703125 7 Carbamidomethyl (C) _ARFC(Carbamidomethyl (C))DSSGNSF_ ENSG00000005448|ENST00000348227|WDR54;ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-4|WDR54 3.876331618118854 0.4019203928379901 2 S{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.0834 0 0 994.3869496076187 0 994.3869496076187 0 18.750612633917 0 0 0 0.5 0 0 0 S{M(Oxidation (M))|F} 2.0834 + + 6 NaN NaN 101252.8 NaN 17049 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21197 86.215 NaN 65187 35 0 15635 0.263 -1 MILNKALL 8 36 487.29340167559894 NaN 0 487.29302978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))ILNKALL_ ENSG00000196735|ENST00000343139|HLA-DQA1;ENSG00000237541|ENST00000374940|HLA-DQA2;ENST00000460633.1_1_6:32605235-32610161:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111959.5 NaN 17050 4145 21189 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21199 86.219 NaN 613300 35 0 21346 0.327 -1 0 91 545.3169038290621 1088.619254724924 2 545.3170776367188 MULTI HCD FTMS 0 0 0 21198 467412.375 0.11329651778773682 64 -1.510711669921875 1 NaN NaN 2 AQT 3 -1 15.049 0 0 1.3824 0 0 282.1693825440397 503.2518709772094 785.4212535212491 0 0 0 0 0 0.4247425010840047 0 0 0 AQT 1.3824 - 546 + NaN NaN 185925.2 NaN 17051 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21200 86.224 NaN 284360 35 0 12374 0.261 -1 0 82 553.8300991066263 1105.6456452800526 2 553.8301391601562 MULTI HCD FTMS 0 0 0 21198 254305.796875 0.11315419672140631 64 -1.510711669921875 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3209 0 0 940.5670910581761 0 940.5670910581761 0 6.839883926472972 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3209 - 330 + NaN NaN 145850.1 NaN 17052 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21201 86.228 NaN 698240 35 0 33991 0.261 -1 0 109 578.3207524131933 1154.6269518931865 2 578.32080078125 MULTI HCD FTMS 0 0 0 21198 202009 0.555572477148115 -17 0.458648681640625 3 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{[TV]|[{I|L}S]} 5 -1 18.698 0 0 1.6194 0 0 479.30103744181775 0 479.30103744181775 0 2.42865882574538 0 0 0 0 0 0.25 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Y{[TV]|[{I|L}S]} 1.6194 - 954 + NaN NaN 197083.5 NaN 17053 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21202 86.231 NaN 642210 35 0 73882 0.261 + 12889 KYFSFPVFF 9 67 591.3051090873345 1180.5956652414689 2 591.8064575195312 MULTI HCD FTMS 0 0 0 21198 188684.0625 0.2128601608064776 -3 0.09506988525390625 4 Unmodified _KYFSFPVFF_ ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;nc|ENSG00000133059|Q6XUX3-3|DSTYK 51.629811660486645 0.02929079705179888 2 [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 67.145 0 0 5.6874 5.6874 88.921 0 0 0 3.2568864632742844 3.6757045754733895 3.2568864632742844 9.740626406154092 0 2.7302046884880937 0 0 0 + + [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.6874;4.8623 +;- + 459 + NaN NaN 188199.4 NaN 17054 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21203 86.234 NaN 200580 35 0 47791 0.262 + 976 AYFNFPEL 8 55 500.74233891904106 999.4701249048821 2 500.7425842285156 MULTI HCD FTMS 0 0 0 21198 67219.5390625 0.6236249915289034 -3 0.09506988525390625 5 Unmodified _AYFNFPEL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 50.855029805455786 0.12247309515496523 2 H{M(Oxidation (M))|F}N{M(Oxidation (M))|F}C{I|L} 6 4 22.66 0 0 2.2672 0 0 220.13084609199376 0 220.13084609199376 0 20.44149751289321 0 0 0 1.0994850021680094 0 0 0.3494850021680094 H{M(Oxidation (M))|F}N{M(Oxidation (M))|F}C{I|L} 2.2672 - 60 NaN NaN 122845.6 NaN 17055 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21204 86.238 NaN 198470 35 0 29011 0.261 + -1 MLLKESPVI 9 55 523.3005986150825 1044.586644296965 2 523.3012084960938 MULTI HCD FTMS 0 0 0 21198 80210.65625 0.7457176106330828 -3 0.09506988525390625 6 Oxidation (M) _M(Oxidation (M))LLKESPVI_ REV__PIWIL4|p.I454L|1|0.31|ENSG00000134627|chr11:94597895-94597895|A/C|missense_variant 14.838274106304384 0.23215694253501695 2 V{I|L} 2 -1 24.464 0 0 2.342 0 0 814.4244005239935 0 814.4244005239935 0 19.85985638199878 0 0 0 0.3494850021680094 0 0 0 V{I|L} 2.342 + + 16 NaN NaN 131431.7 NaN 17056 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21205 86.241 NaN 146520 35 0 11935 0.261 + 19047 NEDIGLATAF 10 46 525.7608544540844 NaN 0 525.7792358398438 PEAK HCD FTMS 0 0 0 21198 6216.3251953125 0.34361030662988257 -1 0.02953338623046875 7 Unmodified _NEDIGLATAF_ ENSG00000142303|ENST00000597188|ADAMTS10;ENST00000601163.1_1_19:8661189-8662174:-|nuORF;nc|ENSG00000142303|Q9H324|ADAMTS10 10.823927491677226 0.33092050725491123 2 EA 2 8 9.3804 0 0 0.89379 0 0 375.17910244080093 471.2291353815063 846.4082378223072 0 0 0 0 0 0.3807196863200844 0 0 0 EA 0.89379 - 59 + NaN NaN 128610.3 NaN 17057 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21206 86.244 NaN 44936 35 0 5761.7 0.261 + 33573 YILYLIVV 8 35 498.3103942871094 NaN 0 498.3103942871094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YILYLIVV_ REV__ENSG00000244694|ENST00000339488|PTCHD4;REV__nc|ENSG00000244694|Q6ZW05-4|PTCHD4;REV__nc|ENSG00000244694|Q6ZW05|PTCHD4 2.8892196856762586 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.70276 0 0 117.07850896515954 775.4352511041624 892.513760069322 0 0 0 0 0 0 0 0 0 V 0.70276 + + 1 + NaN NaN 108398 NaN 17058 4146 21198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21208 86.249 NaN 676640 35 0 189980 0.327 + 9733 HYADVLGLLL 10 71 557.318800641857 1112.623048350514 2 557.3191528320312 MULTI HCD FTMS 0 0 0 21207 186835.390625 0.6046013750215145 1 -0.03589630126953125 1 Unmodified _HYADVLGLLL_ ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF 30.636539890814138 0.2266618088935899 2 {I|L}G{I|L}{I|L}{I|L} 5 5 55.459 0 0 4.9845 0 0 585.2559256536133 0 585.2559256536133 0 26.00325315531208 0 0 0 1.75 0 0 0 + {I|L}G{I|L}{I|L}{I|L} 4.9845 + + 299 NaN NaN 189372.5 NaN 17059 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21209 86.253 NaN 654200 35 0 67066 0.261 + 1481 AYSVLFETF 9 89 538.7690890838281 1075.5236252344562 2 538.7687377929688 MULTI HCD FTMS 0 0 0 21207 81624.0625 0.5185336723693121 1 -0.03589630126953125 2 Unmodified _AYSVLFETF_ ENSG00000162104|ENST00000294016|ADCY9 74.42276476219924 0.007657080072768255 2 {I|L}{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 5 4 42.426 0 0 3.9447 0 0 420.2047208038476 0 420.2047208038476 0 15.861636072835076 0 0 0 1.555462187404089 0 0.6694451763165201 0 + {I|L}{M(Oxidation (M))|F}ET{M(Oxidation (M))|F} 3.9447 + + 1501 + NaN NaN 190407.2 NaN 17060 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21210 86.257 NaN 438380 35 0 146920 0.261 -1 0 66 606.3693930514443 1210.7242331696884 2 606.3694458007812 MULTI HCD FTMS 0 0 0 21207 93844.0703125 0.4222315246569433 -2 0.05908203125 3 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.57732 0 0 358.2774080737884 736.3336275690061 1094.6110356427946 0 0 0 0 0 0 0 0 0 {I|L} 0.57732 - 95 + NaN NaN 158430 NaN 17061 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21211 86.267 NaN 163860 35 0 21224 0.261 + -1 QIMARDGDIEL 11 51 638.8139931505516 1275.613433367903 2 638.8139038085938 MULTI HCD FTMS 0 0 0 21207 55079.7421875 0.6360110808821765 1 -0.03589630126953125 4 Oxidation (M) _QIM(Oxidation (M))ARDGDIEL_ REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1 8.97624648632007 0.3788720818291249 2 ME{I|L} 3 -1 35.445 0 0 2.7787 0 0 884.4215565412125 0 884.4215565412125 0 30.84121882396211 0 0 0 0.9247425010840047 0 0 0 ME{I|L} 2.7787 - 37 NaN NaN 104831.7 NaN 17062 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21212 86.27 NaN 113340 35 0 18581 0.264 -1 SMVELGILL 9 45 495.7807549946593 989.5469570561186 2 495.7803649902344 MULTI HCD FTMS 0 0 0 21207 72804.03125 0.22687040375748882 14 -0.34558868408203125 5 Oxidation (M) _SM(Oxidation (M))VELGILL_ ENST00000267814.13_1_15:45335475-45335541:+|nuORF 28.486842064014134 0.11819662193267319 2 G{I|L}{I|L}{I|L} 4 -1 41.414 0 0 4.1852 0 0 575.263020207653 0 575.263020207653 0 32.461987796517704 0 0 0 1.4247425010840047 0 0 0 G{I|L}{I|L}{I|L} 4.1852 + + 30 NaN NaN 104139.8 NaN 17063 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21213 86.273 NaN 166310 35 0 30614 0.262 -1 0 38 404.1210594303247 806.2275659274494 2 404.1210021972656 MULTI HCD FTMS 0 0 0 21207 37618.0390625 0.5437122931639353 6 -0.16998291015625 6 NaN NaN 2 E 1 -1 0.48455 0 0 0.060101 0 0 373.06925401514314 301.1011141412719 674.1703681564151 0 0 0 0 0 0 0 0 0 E 0.060101 - 8 + NaN NaN 116072.8 NaN 17064 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21214 86.277 NaN 120690 35 0 14760 0.261 -1 MYPDLSELLM 10 50 622.2830665275991 1242.551580121998 2 622.2822875976562 MULTI HCD FTMS 0 0 0 21207 45030.06640625 0.9001698795147794 7 -0.1795654296875 7 2 Oxidation (M) _M(Oxidation (M))YPDLSELLM(Oxidation (M))_ ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 29.081581746732265 0.240155558137004 2 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 61.845 0 0 4.9773 0 0 0 162.02345794315116 162.02345794315116 47.57565264836895 0 0 0 0 1.3494850021680094 2 0.4247425010840047 0 [YN]{I|L}[MN]SE{I|L}{I|L} 4.9773 - 80 NaN NaN 116627.5 NaN 17065 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21215 86.28 NaN 64708 35 0 12077 0.264 -1 PEPMTMAL 8 42 453.2097732832681 NaN 0 453.20965576171875 PEAK HCD FTMS 0 0 0 21207 20601.4296875 0.4822846576890789 -12 0.33130645751953125 8 Oxidation (M) _PEPM(Oxidation (M))TMAL_ ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;PDXDC1-ATP2A1|1|fusion;PDXDC1-ATP2A1|2|fusion 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101561.8 NaN 17066 4147 21207 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21217 86.285 NaN 1098200 35 0 47643 0.327 -1 0 111 589.3429545551332 1176.6713561770664 2 589.34326171875 MULTI HCD FTMS 0 0 0 21216 1431858.875 0.9226796982243592 -1 0.03589630126953125 1 NaN NaN 2 {[HG]|PP}N 3 -1 11.171 0 0 0.94937 0 0 0 865.4661484039731 865.4661484039731 0.759752854957938 0 0 0 0 0.6989700043360187 0 0 0 {[HG]|PP}N 0.94937 - 120 + NaN NaN 257353.5 NaN 17067 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21218 86.289 NaN 1249000 35 0 63937 0.261 -1 0 118 575.8429850378634 1149.6714171425267 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21216 1216938 0.6061369260605399 -8 0.236419677734375 2 NaN NaN 2 D 1 -1 10.995 0 0 0.95635 0 0 61.052608335734085 970.5431817000807 1031.5957900358148 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.95635 - 157 + NaN NaN 278364.2 NaN 17068 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21219 86.293 NaN 708850 35 0 109150 0.261 + -1 FSYAMLPLPF 10 62 601.303109311979 1200.591665690758 2 601.3037109375 MULTI HCD FTMS 0 0 0 21216 468498.875 0.07278813079864307 8 -0.17911529541015625 3 Oxidation (M) _FSYAM(Oxidation (M))LPLPF_ REV__PROX1|p.P492S|1|0.2|ENSG00000117707|chr1:213998009-213998009|C/T|missense_variant 20.453626601364224 0.3197956946484955 2 [YV]{I|L}PC[MT]YV{I|L} 10 -1 + 68.695 0 0 5.7217 5.7217 86.407 0 0 0 24.25968732272281 65.59562510389476 24.25968732272281 6.9897000433601875 0 2.1861818737241734 1.6989700043360187 0 0 [YV]{I|L}PC[MT]YV{I|L};[YV]{I|L}PC[MT]Y{I|L}V;[YV]{I|L}PC{[{M(Oxidation (M))|F}C]|[YS]}{I|L}M{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}PC{[{M(Oxidation (M))|F}C]|[YS]}M{I|L}{I|L};[YV]{I|L}{[DS]|[MA]|[CV]|TT}DDY{I|L}V;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V]C{[{M(Oxidation (M))|F}C]|[YS]}{I|L}M{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}{[ES]|[DT]|[{I|L}C]}{I|L}YV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V]C[MT]YV{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V]C{[{M(Oxidation (M))|F}C]|[YS]}M{I|L}{I|L} 5.7217;5.1395;5.0732;4.8884;4.8415;4.3062;2.5977;1.6608;1.5805;1.5331 -;-;-;-;-;-;-;-;-;- 216 NaN NaN 199412.5 NaN 17069 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21220 86.296 NaN 945430 35 0 80291 0.261 + 29288 TYLQALPYF 9 83 558.2925339904434 1114.5705150476867 2 559.2835693359375 MULTI HCD FTMS 0 0 0 21216 14400.5185546875 0.7974825064848283 -1 0.03589630126953125 4 Unmodified _TYLQALPYF_ ENSG00000158864|ENST00000676972|NDUFS2;ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2 22.736283301280096 0.1639198954644489 2 {I|L}[DN]A{I|L}{M(Oxidation (M))|F}{I|L} 7 7 34.753 0 0 3.118 0 0 163.10094607974582 162.05599390201408 325.15693998175993 0 0 0 0 0 1.3193415193665468 0 0.6549471895720984 0.805462187404089 {I|L}[DN]A{I|L}{M(Oxidation (M))|F}{I|L} 3.118 - 887 + NaN NaN 239362.8 NaN 17070 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21221 86.3 NaN 942880 35 0 114640 0.261 + 2763 DYATIFNNL 9 80 535.7608826749149 1069.5072124166297 2 535.7615356445312 MULTI HCD FTMS 0 0 0 21216 316691.375 0.9251698817159126 -1 0.03589630126953125 5 Unmodified _DYATIFNNL_ ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5 176.83740622441886 1.0594397382223596E-10 2 {[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NN{I|L} 9 0 + 107.53 0 0 10.054 10.054 92.407 0 0 0 14.864692631441784 6.817496819840656 6.817496819840656 6.817496819840656 0 2.774227503252014 1.5228787452803376 1.7931576817365436 0.7059771852360797 + + {[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}N{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}NGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GGN{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GG{I|L}N;{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}GGGG{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AT{I|L}{M(Oxidation (M))|F}[VG]AN;{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}NN{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}N{I|L}N;{[{M(Oxidation (M))|F}C]|[YS]}{[CP]|[EA]}{I|L}{M(Oxidation (M))|F}NGG{I|L} 10.054;9.4163;9.1927;8.8886;7.9656;7.6757;7.2411;6.6917;6.0543;5.8307 +;-;-;-;-;-;-;-;-;- + 2986 NaN NaN 247388.1 NaN 17071 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21222 86.303 NaN 447960 35 0 136500 0.261 + 1786 CLWFFFVF 8 89 554.7714029004011 NaN 0 554.771484375 PEAK HCD FTMS 0 0 0 21216 194224.328125 0.7465597825561436 -1 0.03589630126953125 6 Unmodified _CLWFFFVF_ REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense 32.45364647766026 0.3770926224456901 2 V{M(Oxidation (M))|F}E 3 -1 28.188 0 0 2.5451 0 0 165.07954451142683 564.2466524713499 729.3261969827768 0 0 0 0 0 1.3494850021680094 0 0 0 V{M(Oxidation (M))|F}E 2.5451 - 148 + NaN NaN 176345.1 NaN 17072 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21223 86.306 NaN 63102 35 0 5055.6 0.262 -1 0 39 436.77471307099665 871.5348732087933 2 436.77484130859375 MULTI HCD FTMS 0 0 0 21216 44286.7421875 0.024689519450663774 17 -0.39044189453125 7 NaN NaN 2 Q 1 -1 8.8515 0 0 1.0156 0 0 523.3434497242215 217.10755335025627 740.4510030744777 0 0 0 0 0 0.4247425010840047 0 0 0 Q 1.0156 - 4 + NaN NaN 108121 NaN 17073 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21224 86.31 NaN 63957 35 0 16012 0.261 + -1 WFTLCACYHR 10 35 452.8704168063984 NaN 0 452.8808898925781 PEAK HCD FTMS 0 0 0 21216 8094.97216796875 0.3638399252976646 -6 0.1800537109375 8 Carbamidomethyl (C) _WFTLC(Carbamidomethyl (C))ACYHR_ REV__ENSG00000100241|ENST00000380817|SBF1;REV__ENST00000399627.3_1_22:50906187-50913269:-|nuORF;REV__nc|ENSG00000100241|O95248-4|SBF1;REV__nc|ENSG00000100241|O95248|SBF1 0.6976657623105312 0.3395871838311286 2 {M(Oxidation (M))|F} 1 -1 0.9691 0 0 0.10723 0 0 631.1243652516656 122.50535761051015 753.6297228621758 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.10723 + + 1 + NaN NaN 99129.7 NaN 17074 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21225 86.313 NaN 77555 35 0 7238.9 0.261 + 2348 DPASVQVRLLW 11 37 642.3564453125 NaN 0 642.3564453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _DPASVQVRLLW_ ENSG00000198837|ENST00000361217|DENND4B;ENST00000492898.1_1_1:153903201-153905153:-|nuORF 3.2813086475875832 0.3328120158028032 2 {I|L} 1 10 5.4846 0 0 0.42861 0 0 128.01390165010145 1035.4946993463502 1163.5086009964516 0 0 0 0 0 0 0 0 0 + {I|L} 0.42861 + + 3 + NaN NaN 104504.8 NaN 17075 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21226 86.316 NaN 118730 35 0 20015 0.264 + 7238 FSTPVGQCL 9 51 476.23178484819687 NaN 0 476.198486328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _FSTPVGQCL_ ENSG00000175662|ENST00000379504|TOM1L2;ENST00000537091.2_1_17:17772601-17875627:-|nuORF;ENST00000579586.1_1_17:17810817-17875627:-|nuORF;nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;TOM1L2-ATPAF2|1|fusion 4.3292370932331545 0.2742679634796037 2 {I|L} 1 8 4.6041 0 0 0.48441 0 0 492.28481495830937 342.0651949518188 834.3500099101282 0 0 0 0 0 0 0 0 0 + {I|L} 0.48441 + + 3 + NaN NaN 116712 NaN 17076 4148 21216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21228 86.321 NaN 1189900 35 0 229160 0.327 + 15966 LPPWLQDPEL 10 74 604.3212583886041 1206.627963844008 2 604.321533203125 MULTI HCD FTMS 0 0 0 21227 659899.5625 0.9886685645250307 1 -0.02947998046875 1 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 69.10491478415734 0.018645933849003846 2 {I|L}{I|L}QDPE{I|L} 7 3 46.503 0 0 3.8539 0 0 380.1851063459 0 380.1851063459 0 9.451235544014338 0 0 0 1.6989700043360187 0 0.3494850021680094 0.3807196863200844 {I|L}{I|L}QDPE{I|L} 3.8539 - 354 NaN NaN 283233.8 NaN 17077 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21229 86.326 NaN 832190 35 0 33941 0.261 -1 0 125 597.8564615606568 1193.6983701881136 2 597.8563842773438 MULTI HCD FTMS 0 0 0 21227 812402.875 1 0 0 2 NaN NaN 2 W 1 -1 11.42 0 0 0.95669 0 0 989.6086007562761 0 989.6086007562761 0 0.30590328430122327 0 0 0 0 0 0 0 W 0.95669 - 331 + NaN NaN 223135.8 NaN 17078 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21230 86.329 NaN 1047000 35 0 90044 0.261 + 16551 LTSQFLPYF 9 86 558.2925339904434 1114.5705150476867 2 559.2830200195312 MULTI HCD FTMS 0 0 0 21227 18057.47265625 1 0 0 3 Unmodified _LTSQFLPYF_ ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 30.636539890814138 0.10832830463492794 2 {I|L}{I|L}CQDT{I|L} 7 7 40.508 0 0 3.6344 0 0 163.1005837638582 162.0560701959594 325.1566539598176 0 0 0 0 0 0.7429928190999391 0 1.305462187404089 1.1307196863200843 {I|L}{I|L}CQDT{I|L} 3.6344 - 1628 + NaN NaN 249811.7 NaN 17079 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21231 86.332 NaN 932330 35 0 163630 0.261 + 517 APAEDPVFTIL 11 78 586.8141117561682 1171.6136705791364 2 586.8148193359375 MULTI HCD FTMS 0 0 0 21227 351064 0.6216317403788318 -2 0.072113037109375 4 Unmodified _APAEDPVFTIL_ ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;nc|nan|Q9UFG5-2|C19orf25 47.594388314883695 0.09129669622414652 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L}{I|L} 5 7 56.247 0 0 4.8008 0 0 532.2670765607437 0 532.2670765607437 0 37.90615272249803 0 0 0 1.5 0 0.8494850021680094 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L}{I|L} 4.8008 - 208 NaN NaN 235156.3 NaN 17080 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21232 86.336 NaN 530290 35 0 78910 0.261 + 17343 LYPVTVNMLF 10 55 606.820375738532 1211.626198543864 2 606.8203735351562 MULTI HCD FTMS 0 0 0 21227 193552.140625 0.4154707547671012 -12 0.347747802734375 5 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 49.55428908609986 0.07941048486997417 2 [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 0 + 81.904 0 0 6.7598 6.7598 91.442 0 0 0 24.25968732272281 74.25495999259283 24.25968732272281 12.659389507179355 0 1.3807196863200843 1.6989700043360187 0.4247425010840047 0.3494850021680094 + + [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PVTVGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[VP][Y{I|L}]TVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[VP][Y{I|L}]TVGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]P[NS][{I|L}V]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.7598;5.715;4.307;3.2621;3.1688 +;-;-;-;- + 205 NaN NaN 171793.5 NaN 17081 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21233 86.339 NaN 271150 35 0 48404 0.261 + 30138 VGGLFFILTVR 11 63 611.3723059069091 NaN 0 611.3560791015625 PEAK HCD FTMS 0 0 0 21227 31796.37890625 0.6907439377363543 3 -0.07509613037109375 6 Unmodified _VGGLFFILTVR_ REV__ENSG00000139719|ENST00000267199|VPS33A 1.4819007175156935 0.3379164178981577 2 DR 2 -1 10.969 0 0 0.89857 0 0 357.3161930864954 589.2611178033811 946.5773108898766 0 0 0 0 0 0 0 0 0 DR 0.89857 - 41 + NaN NaN 132138.5 NaN 17082 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21234 86.342 NaN 148450 35 0 26958 0.261 + 11574 IYSTLVTCVTF 11 49 623.823223387031 1245.631893840862 2 623.8233642578125 MULTI HCD FTMS 0 0 0 21227 32097.142578125 0.5869268086199406 -4 0.131195068359375 7 Unmodified _IYSTLVTCVTF_ ENSG00000164051|ENST00000395694|CCDC51;nc|ENSG00000164051|Q96ER9-2|CCDC51 28.494509381512117 0.21104904156558496 2 VT{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 6 5 43.148 0 0 3.464 0 0 577.3112660138687 0 577.3112660138687 0 39.65350013324773 0 0 0 1.9247425010840047 0 0 0 + VT{[DS]|[MA]|[CV]|TT}T{M(Oxidation (M))|F} 3.464 + + 32 NaN NaN 126557.7 NaN 17083 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21235 86.346 NaN 123620 35 0 10914 0.262 + 3411 EFDAVLADF 9 49 513.7426457287775 1025.4707385243548 2 514.295166015625 MULTI HCD FTMS 0 0 0 21227 6939.6201171875 0.09195014129392086 -10 0.2954864501953125 8 Unmodified _EFDAVLADF_ ENSG00000102760|ENST00000379359|RGCC;nc|ENSG00000102760|Q9H4X1-2|RGCC 29.081581746732265 0.1154664336125038 2 {I|L}AD{M(Oxidation (M))|F} 4 5 51.938 0 0 5.0648 0 0 561.245254211115 0 561.245254211115 0 33.979400086720375 0 0 0 2 0 0 0 + {I|L}AD{M(Oxidation (M))|F} 5.0648 + + 32 + NaN NaN 104296.2 NaN 17084 4149 21227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21237 86.351 NaN 2557300 35 0 129460 0.327 + 402 AKFRKQERA 9 109 567.3303563093277 1132.6461596854554 2 567.33056640625 MULTI HCD FTMS 0 0 0 21236 3154179 0.7523086293835098 -6 0.19342041015625 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 6.2057823575117 0.30397260197431997 2 {[CT]|[{M(Oxidation (M))|F}G]}{[VA]|[{I|L}G]}KQHTV{M(Oxidation (M))|F} 10 8 {[CT]|[{M(Oxidation (M))|F}G]}{[VA]|[{I|L}G]}KQHTV + + 11.783 -10.069 -1.0407 1.0403 1.0403 59.674 0 0 0 0 -4.201368654124064 -4.201368654124064 0 0 0 0 0 0 {[CT]|[{M(Oxidation (M))|F}G]}{[VA]|[{I|L}G]}KQHTV{M(Oxidation (M))|F} 1.0403 - 540 + NaN NaN 375977.8 NaN 17085 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21238 86.355 NaN 666170 35 0 326380 0.261 -1 0 83 584.3563254708603 1166.6980980085204 2 584.3565673828125 MULTI HCD FTMS 0 0 0 21236 179517.125 0.2849963346934855 -13 0.377227783203125 2 NaN NaN 2 [{I|L}P]A 3 -1 5.9421 0 0 0.50931 0 0 0 882.4895723932249 882.4895723932249 1.3380312008851565 0 0 0 0 0 0 0 0 [{I|L}P]A 0.50931 - 24 + NaN NaN 190382.8 NaN 17086 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21239 86.359 NaN 641640 35 0 134800 0.261 + 22325 QPISVDWCF 9 68 547.7524140510033 1093.4902751688064 2 547.7526245117188 MULTI HCD FTMS 0 0 0 21236 316085.625 0.5081577108873541 -4 0.13114166259765625 3 Unmodified _QPISVDWCF_ ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A 69.10491478415734 0.009377850133389008 2 RSVDWC{M(Oxidation (M))|F} 7 3 66.605 0 0 6.091 0 0 182.09825601288543 0 182.09825601288543 0 51.91199807269804 0 0 0 2.3494850021680094 0 0.7059771852360797 0 RSVDWC{M(Oxidation (M))|F} 6.091 - 263 + NaN NaN 191171.8 NaN 17087 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21240 86.362 NaN 475580 35 0 71191 0.261 + 32180 VYSTMLVFF 9 60 561.7809970731696 1121.547441213139 2 561.7810668945312 MULTI HCD FTMS 0 0 0 21236 118702.7421875 0.4487168499538465 1 -0.02614593505859375 4 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ ENSG00000104613|ENST00000397977|INTS10 44.40701690623563 0.04511410083598184 2 {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 46.23 0 0 4.122 0 0 597.2460681242318 0 597.2460681242318 0 39.151603310239906 0 0 0 1.7302046884880937 0 0 0 + {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.122 + + 110 NaN NaN 169813.8 NaN 17088 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21241 86.365 NaN 134850 35 0 29118 0.261 -1 SFVEEVYM 8 39 510.22303678975896 1018.431520646318 2 510.2232666015625 MULTI HCD FTMS 0 0 0 21236 112140.234375 0.47592710285976353 -7 0.2262115478515625 5 Oxidation (M) _SFVEEVYM(Oxidation (M))_ ENST00000562757.5_1_16:66857380-66864856:-|nuORF 0.7936320650641473 0.540814922690045 2 D{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 1.7956 0 0 0.17631 0 0 591.2501374449492 0 591.2501374449492 0 1.7956061064919067 0 0 0 0 0 0 0 D{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.17631 - 4 + NaN NaN 103951.6 NaN 17089 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21242 86.369 NaN 392660 35 0 29530 0.261 + 11527 IYSFLGETF 9 79 538.7690890838281 1075.5236252344562 2 538.7860107421875 MULTI HCD FTMS 0 0 0 21236 37961.0703125 0.24115551950394895 4 -0.077972412109375 6 Unmodified _IYSFLGETF_ ENSG00000164850|ENST00000397088|GPER1 34.10243960390752 0.09241788333544565 2 MYT{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 6 7 40.635 0 0 3.7781 0 0 0 291.1345996387439 291.1345996387439 13.291039488505803 0 0 0 0 0.5 0 1.0228787452803376 0 MYT{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L} 3.7781 - 901 + NaN NaN 165734 NaN 17090 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21243 86.372 NaN 160870 35 0 14686 0.261 + 6670 FPNATDYWTF 10 45 631.2791689857792 1260.5437850383582 2 631.2796020507812 MULTI HCD FTMS 0 0 0 21236 56298.06640625 0.6474746372947382 -9 0.2693023681640625 7 Unmodified _FPNATDYWTF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 12.174745833636585 0.39723355204102767 2 YWT{M(Oxidation (M))|F} 4 6 37.713 0 0 2.9918 0 0 645.2753163068375 0 645.2753163068375 0 35.72301001672965 0 0 0 1 0 0 0 + YWT{M(Oxidation (M))|F} 2.9918 + + 18 NaN NaN 120526.2 NaN 17091 4150 21236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21245 86.377 NaN 1571600 35 0 210480 0.327 + 12890 KYFSFPVFF 9 82 591.3051090873345 1180.5956652414689 2 591.3052368164062 MULTI HCD FTMS 0 0 0 21244 1083794.875 0.8463766087200905 2 -0.04224395751953125 1 Unmodified _KYFSFPVFF_ ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;nc|ENSG00000133059|Q6XUX3-3|DSTYK 92.65332237495696 0.004456439685314431 2 [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 95.823 0 0 8.1165 8.1165 89.842 0 0 0 5.568109453757657 16.478174818886373 5.568109453757657 5.568109453757657 0 3.2302046884880937 0 1.394599018282542 0.2742275032520141 + + [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YS{M(Oxidation (M))|F}PV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[VP]{[QS]|[NT]}P[MT]K{M(Oxidation (M))|F}{M(Oxidation (M))|F};[VP]{[QS]|[NT]}P{M(Oxidation (M))|F}[MT]K{M(Oxidation (M))|F};[VP]{[QS]|[NT]}P[MT]{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[YK][{I|L}V]{[YC]|[HE]}V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[VP]{[QS]|[NT]}P{M(Oxidation (M))|F}[MT]{M(Oxidation (M))|F}K;[VP]{[QS]|[NT]}P[MT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}K;[VP]{[QS]|[NT]}P{M(Oxidation (M))|F}[K{I|L}]{[YC]|[HE]};[C(Carbamidomethyl (C))R][{I|L}P][WR]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.1165;7.6449;4.5961;4.0701;3.6216;3.2975;2.6277;2.1792;1.4003;1.2616 +;-;-;-;-;-;-;-;-;- + 1537 NaN NaN 329736.4 NaN 17092 4151 21244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21246 86.381 NaN 373890 35 0 12738 0.261 -1 0 85 545.3169038290621 1088.619254724924 2 545.3168334960938 MULTI HCD FTMS 0 0 0 21244 343198.1875 0.08318812602001131 69 -1.6315078735351562 2 NaN NaN 2 TA 2 -1 13.315 0 0 1.2232 0 0 414.2474961026789 499.2770174615844 913.5245135642633 0 0 0 0 0 0.7742275032520141 0 0 0 TA 1.2232 - 92 + NaN NaN 140553.4 NaN 17093 4151 21244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21247 86.385 NaN 544950 35 0 23423 0.261 + 34840 YRNICIKVF 9 106 578.3207524131933 1154.6269518931865 2 578.3209228515625 MULTI HCD FTMS 0 0 0 21244 313439.28125 0.8620320773806475 -12 0.35111236572265625 3 Unmodified _YRNICIKVF_ REV__ENST00000605778.1_1_7:35737925-35738120:+|nuORF 4.3292370932331545 0.3181982124262546 2 G 1 -1 5.4846 0 0 0.47501 0 0 472.33184097995735 622.2340181940061 1094.5658591739634 0 0 0 0 0 0 0 0 0 G 0.47501 - 387 + NaN NaN 170780.8 NaN 17094 4151 21244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21248 86.388 NaN 397050 35 0 23991 0.261 + 22205 QLPPSDFHW 9 90 563.7711988647117 NaN 0 563.7825317382812 PEAK HCD FTMS 0 0 0 21244 10553.2998046875 1 0 0 4 Unmodified _QLPPSDFHW_ ENSG00000069248|ENST00000261396|NUP133;ENST00000366678.4_1_1:229634943-229644011:-|nuORF;NUP133|p.T387Mfs*2|1|0.39|ENSG00000069248|chr1:229489989-229489989|G/-|frameshift_variant 7.910154910731844 0.25691533546754686 2 VWQ 3 9 10.802 0 0 0.95973 0 0 319.1293595440732 390.1674709019413 709.2968304460145 0 0 0 0 0 0 0 0 0 VWQ 0.95973 - 670 + NaN NaN 151880.6 NaN 17095 4151 21244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21249 86.391 NaN 188530 35 0 18202 0.262 + 3412 EFDAVLADF 9 59 513.7426457287775 1025.4707385243548 2 514.2761840820312 MULTI HCD FTMS 0 0 0 21244 22540.5 0.2986621925748308 -8 0.25235748291015625 5 Unmodified _EFDAVLADF_ ENSG00000102760|ENST00000379359|RGCC;nc|ENSG00000102760|Q9H4X1-2|RGCC 49.93300154707207 0.03166451819912738 2 V{I|L}AD{M(Oxidation (M))|F} 5 4 62.217 0 0 6.0672 0 0 462.17436508861107 0 462.17436508861107 0 47.613043428025044 0 0 0 2.2396518287104437 0 0.4247425010840047 0 + V{I|L}AD{M(Oxidation (M))|F} 6.0672 + + 118 + NaN NaN 132478.8 NaN 17096 4151 21244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21251 86.396 NaN 803370 35 0 189590 0.327 + 28415 TPFLYDLVM 9 65 557.7782863812777 1113.5420198293552 2 557.7785034179688 MULTI HCD FTMS 0 0 0 21250 395783.71875 0.3178001341953823 -9 0.27182769775390625 1 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 85.35673624503755 0.00464763827098139 2 YT{I|L}D{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F} 9 6 + 62.578 0 0 5.6197 5.6197 83.389 0 0 0 0.21652514092060926 0.21652514092060926 0.21652514092060926 0.21652514092060926 0 1 0 0.3807196863200844 0 YT{I|L}D{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};[YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVYD{I|L}V{M(Oxidation (M))|F};YT{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YT]{I|L}D{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YE]{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DV]YV{I|L}V{M(Oxidation (M))|F};[YT]{I|L}P[TP][Y{I|L}]{M(Oxidation (M))|F} 5.6197;5.6003;5.4713;5.343;5.0097;4.8591;4.0692;3.138;2.3443 -;-;-;-;-;-;-;-;- 577 + NaN NaN 218591.2 NaN 17097 4152 21250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21252 86.401 NaN 160960 35 0 17780 0.261 + 16424 LSLQFEPVL 9 57 523.3005986150825 1044.586644296965 2 523.3001098632812 MULTI HCD FTMS 0 0 0 21250 75936.3203125 0.7059791552784601 3 -0.054840087890625 2 Unmodified _LSLQFEPVL_ ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L 14.405379775768559 0.2358970535022398 2 {M(Oxidation (M))|F}EPV{I|L} 5 4 41.498 0 0 3.9727 0 0 441.25654799629064 0 441.25654799629064 0 24.508272069161734 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}EPV{I|L} 3.9727 + + 40 NaN NaN 119887.7 NaN 17098 4152 21250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21253 86.404 NaN 225500 35 0 49235 0.261 + 17452 LYSGVFVAF 9 46 501.7685725346415 1001.5225921360831 2 501.7684631347656 MULTI HCD FTMS 0 0 0 21250 76528.96875 0.7274349393792335 3 -0.054840087890625 3 Unmodified _LYSGVFVAF_ ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000236067.8_1_1:44440634-44441766:+|nuORF;ENST00000468183.5_1_1:44440655-44441072:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF 34.10243960390752 0.09241788333544565 2 C(Carbamidomethyl (C)){M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5 5 51.81 0 0 5.1732 0 0 359.24385786049555 0 359.24385786049555 0 46.32576888900239 0 0 0 1.9247425010840047 0 0 0 C(Carbamidomethyl (C)){M(Oxidation (M))|F}VA{M(Oxidation (M))|F} 5.1732 - 152 + NaN NaN 129063.2 NaN 17099 4152 21250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21254 86.407 NaN 114860 35 0 10952 0.261 + 6671 FPNATDYWTF 10 42 631.2791689857792 1260.5437850383582 2 631.2791137695312 MULTI HCD FTMS 0 0 0 21250 57170.34765625 0.6575065979288258 -7 0.20629119873046875 4 Unmodified _FPNATDYWTF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 10.150570793230772 0.4161670024087991 2 YWT{M(Oxidation (M))|F} 4 6 36.855 0 0 2.9237 0 0 645.2794056623062 0 645.2794056623062 0 36.85464087144375 0 0 0 0.5 0 0.3807196863200844 0 + YWT{M(Oxidation (M))|F} 2.9237 + + 11 NaN NaN 99509.1 NaN 17100 4152 21250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21255 86.411 NaN 77389 35 0 6131 0.261 + 14206 LARRLRDLPE 10 44 619.869388600342 1237.7242242674838 2 619.8687133789062 MULTI HCD FTMS 0 0 0 21250 50626.9921875 1 0 0 5 Unmodified _LARRLRDLPE_ ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant 3.2813086475875832 0.45793521633868084 2 S 1 10 9.2917 0 0 0.75071 0 0 130.1898747575213 1017.5022677057249 1147.6921424632462 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.75071 - 12 + NaN NaN 119838.8 NaN 17101 4152 21250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21256 86.414 NaN 122560 35 0 20628 0.262 -1 QYLCPVYI 8 47 528.2640536114833 NaN 0 528.2644653320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _QYLC(Carbamidomethyl (C))PVYI_ ENSG00000115665|ENST00000264047|SLC5A7 8.593279151180031 0.38822285293237185 2 YV 2 -1 13.583 0 0 1.2881 0 0 131.09239714356312 658.2653292291624 789.3577263727254 0 0 0 0 0 0.5 0 0 0 YV 1.2881 - 5 + NaN NaN 122812.5 NaN 17102 4152 21250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21258 86.419 NaN 972420 35 0 44490 0.327 -1 0 113 589.3429545551332 1176.6713561770664 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21257 1029791.5 0.6635903349441545 4 -0.08112335205078125 1 NaN NaN 2 W 1 -1 12.218 0 0 1.0384 0 0 972.582090285268 0 972.582090285268 0 0.9025952052689394 0 0 0 0 0 0 0 W 1.0384 - 254 + NaN NaN 251375.8 NaN 17103 4153 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21259 86.423 NaN 159670 35 0 12132 0.261 -1 IFLLACPPCW 10 54 638.8139931505516 1275.613433367903 2 638.81494140625 MULTI HCD FTMS 0 0 0 21257 25103.59375 0.2898736116195542 7 -0.15282440185546875 2 2 Carbamidomethyl (C) _IFLLAC(Carbamidomethyl (C))PPC(Carbamidomethyl (C))W_ TMEM164|p.R140W|1|0.39|ENSG00000157600|chrX:110067374-110067374|C/T|missense_variant 12.531546534597751 0.39389615866941496 2 ME{I|L} 3 -1 29.693 0 0 2.3277 0 0 884.4227730933962 0 884.4227730933962 0 17.37334396171555 0 0 0 0.5 0 0 0 ME{I|L} 2.3277 - 28 NaN NaN 118856 NaN 17104 4153 21257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21261 86.428 NaN 1628200 35 0 77121 0.327 -1 0 115 575.8429850378634 1149.6714171425267 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21260 1864269 0.9285619160630671 -2 0.03235626220703125 1 NaN NaN 2 D 1 -1 10.599 0 0 0.92191 0 0 61.05275653205428 970.5427709745909 1031.595527506645 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.92191 - 189 + NaN NaN 337511.6 NaN 17105 4154 21260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21262 86.433 NaN 383090 35 0 52739 0.261 + 35191 YVLCICILYV 10 62 601.3225106070817 NaN 0 601.3036499023438 PEAK HCD FTMS 0 0 0 21260 13012.66015625 0.7642734547410089 -2 0.03235626220703125 2 Unmodified _YVLCICILYV_ ENST00000407010.6_2_7:16128723-16129239:-|nuORF 7.910154910731844 0.33341429274560913 2 M{I|L} 2 9 10.969 0 0 0.91361 0 0 131.1317406504848 822.3533535842128 953.4850942346975 0 0 0 0 0 0 0 0 0 M{I|L} 0.91361 - 29 + NaN NaN 155073.4 NaN 17106 4154 21260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21263 86.436 NaN 356400 35 0 123070 0.261 + 1787 CLWFFFVF 8 59 554.7714029004011 NaN 0 554.7714233398438 PEAK HCD FTMS 0 0 0 21260 243134.359375 0.9345602387673457 5 -0.1238250732421875 3 Unmodified _CLWFFFVF_ REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense 24.20995872069341 0.3821035703978675 2 V{M(Oxidation (M))|F}E 3 -1 28.94 0 0 2.613 0 0 165.0788150036347 564.2456759088499 729.3244909124846 0 0 0 0 0 1.4247425010840047 0 0 0 V{M(Oxidation (M))|F}E 2.613 - 66 + NaN NaN 142304.3 NaN 17107 4154 21260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21264 86.44 NaN 582640 35 0 71352 0.261 + 32911 YADTLFDIL 9 76 535.7736277264498 NaN 0 535.7615966796875 PEAK HCD FTMS 0 0 0 21260 19495.05859375 1 0 0 4 Unmodified _YADTLFDIL_ ENSG00000136261|ENST00000258761|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF;nc|ENSG00000136261|Q9Y6E2-2|BZW2 21.74664581756881 0.17567436591797916 2 NN{M(Oxidation (M))|F}{I|L}TA 6 8 31.74 0 0 2.9677 0 0 131.1159677558308 275.06736169986567 406.1833294556965 0 0 0 0 0 0 0 1.2764209843288903 0.3252574989159953 NN{M(Oxidation (M))|F}{I|L}TA 2.9677 - 563 + NaN NaN 186367.7 NaN 17108 4154 21260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21265 86.443 NaN 66401 35 0 4883.4 0.261 + 32477 WELPLQDEPL 10 46 620.3165090333482 1238.6184651334963 2 620.3165283203125 MULTI HCD FTMS 0 0 0 21260 35138.59375 0.9173691806509986 4 -0.09769439697265625 5 Unmodified _WELPLQDEPL_ ENSG00000198844|ENST00000361926|ARHGEF15 4.897010918128616 0.4493830473644964 2 D 1 9 16.99 0 0 1.3717 0 0 766.4021393051745 354.1673678033813 1120.5695071085559 0 0 0 0 0 1 0 0 0 + D 1.3717 + + 9 + NaN NaN 100887.4 NaN 17109 4154 21260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21266 86.446 NaN 176710 35 0 26259 0.261 + 17183 LYMISVASFGF 11 49 617.8110945124142 1233.6076360916284 2 617.8107299804688 MULTI HCD FTMS 0 0 0 21260 29982.8203125 0.3693521700517043 -7 0.1795654296875 6 Unmodified _LYMISVASFGF_ REV__ENSG00000171135|ENST00000647897|JAGN1 9.38312468134398 0.3753269387758208 2 D 1 -1 3.0989 0 0 0.25121 0 0 671.241049941624 444.3109541441844 1115.5520040858084 0 0 0 0 0 0 0 0 0 D 0.25121 - 8 + NaN NaN 130893.7 NaN 17110 4154 21260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21268 86.451 NaN 85630 35 0 7611.4 0.327 + 10760 ISDEMSKTALW 11 42 640.8140923289617 1279.6136317247233 2 640.8145141601562 MULTI HCD FTMS 0 0 0 21267 48671.87109375 0.8512364449466543 1 -0.01296234130859375 1 Unmodified _ISDEMSKTALW_ ENSG00000144290|ENST00000446997|SLC4A10;ENST00000446228.5_1_2:162758621-162834241:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10 16.149105407346934 0.31637472687818013 2 {I|L}W{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}W 7 7 31.19 0 0 2.4375 0 0 222.10456529992376 0 222.10456529992376 0 28.71600731282193 0 0 0 0.8494850021680094 0 0 0 {I|L}W{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}W 2.4375 - 53 + NaN NaN 109330.9 NaN 17111 4155 21267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21269 86.455 NaN 147570 35 0 11080 0.264 + 8043 GGYLVYCTC 9 43 489.705950157202 977.397347381204 2 489.7060852050781 MULTI HCD FTMS 0 0 0 21267 26174.171875 0.2672070421619699 -4 0.074310302734375 2 Unmodified _GGYLVYCTC_ ENSG00000111641|ENST00000322166|NOP2;ENST00000537708.1_1_12:6669555-6669804:-|nuORF;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;nc|ENSG00000111641|P46087-2|NOP2;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-4|NOP2 4.75600775471527 0.31496297302216103 2 {I|L}A 2 8 10.969 0 0 1.1223 0 0 130.9110689164043 659.3404024713499 790.2514713877542 0 0 0 0 0 0 0 0 0 {I|L}A 1.1223 - 15 + NaN NaN 120058.7 NaN 17112 4155 21267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21270 86.459 NaN 103200 35 0 14249 0.261 + 8721 HHCVVLGIL 9 43 495.7807549946593 989.5469570561186 2 495.7809143066406 MULTI HCD FTMS 0 0 0 21267 25885.8515625 0.08066495075560527 22 -0.4770660400390625 3 Unmodified _HHCVVLGIL_ ENST00000500113.1_1_11:77850879-77852634:+|nuORF 14.581692164780916 0.23437375358055648 2 {I|L}{I|L} 2 7 24.776 0 0 2.5038 0 0 745.3664869883058 0 745.3664869883058 0 17.78659694992122 0 0 0 0.3807196863200844 0 0 0 + {I|L}{I|L} 2.5038 + + 9 NaN NaN 116425.6 NaN 17113 4155 21267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21272 86.464 NaN 2047000 35 0 333970 0.327 + 18911 NAFEDSFSSIL 11 100 615.2881211953153 1228.5616894574305 2 615.2877197265625 MULTI HCD FTMS 0 0 0 21271 1142740.25 0.040717132540198514 -9 0.2150115966796875 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 115.05908914016896 0.018528561159765103 2 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 3 + 91.891 0 0 7.4796 7.4796 94.272 0 0 0 11.376594808824876 45.01907933283896 11.376594808824876 22.385606273598313 0 2.829689690656103 1.3979400086720375 1.7059771852360797 0.2614393726401688 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}EC(Carbamidomethyl (C))SS{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{M(Oxidation (M))|F}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S[C(Carbamidomethyl (C))S]E{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][DP]SS{M(Oxidation (M))|F}SS{I|L}{I|L} 7.4796;5.6575;5.5381;5.4991;5.3544;5.3522;5.0703;5.0007;4.8471;4.33 -;-;+;-;-;-;-;-;-;- + 2350 NaN NaN 414394 NaN 17114 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21273 86.468 NaN 663440 35 0 20937 0.261 -1 0 112 597.8564615606568 1193.6983701881136 2 597.8564453125 MULTI HCD FTMS 0 0 0 21271 503549.15625 0.619826900846455 7 -0.175933837890625 2 NaN NaN 2 W 1 -1 11.783 0 0 0.98708 0 0 989.6092111078386 0 989.6092111078386 0 0.3341267711129863 0 0 0 0 0 0 0 W 0.98708 - 559 + NaN NaN 191973.6 NaN 17115 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21274 86.472 NaN 1138900 35 0 151160 0.261 + 518 APAEDPVFTIL 11 115 586.8141117561682 1171.6136705791364 2 586.814453125 MULTI HCD FTMS 0 0 0 21271 351596.8125 0.6225751955940365 5 -0.13057708740234375 3 Unmodified _APAEDPVFTIL_ ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;nc|nan|Q9UFG5-2|C19orf25 41.95555342248728 0.1243556816384599 2 {M(Oxidation (M))|F}T{I|L}{I|L} 4 7 54.68 0 0 4.6671 0 0 679.3179366220568 0 679.3179366220568 0 33.52900304691161 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + {M(Oxidation (M))|F}T{I|L}{I|L} 4.6671 + + 3274 NaN NaN 268654.7 NaN 17116 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21275 86.475 NaN 946330 35 0 151500 0.261 + 17344 LYPVTVNMLF 10 61 606.820375738532 1211.626198543864 2 606.8204956054688 MULTI HCD FTMS 0 0 0 21271 352189.5625 0.7559950661381127 -5 0.08727264404296875 4 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 59.368380827593164 0.04371880213842136 2 [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 0 + 90.112 0 0 7.4372 7.4372 90.392 0 0 0 22.498774732165998 79.65405153770516 22.498774732165998 9.164539485499262 0 2.4674165578762484 1.5228787452803376 0.4247425010840047 0 + + [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PVTVGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]P{[QS]|[NT]}VV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[HK][WH]VV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7.4372;6.6809;3.4208;0.56526 +;-;-;- + 200 NaN NaN 222643.3 NaN 17117 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21276 86.479 NaN 409720 35 0 61533 0.261 + 15967 LPPWLQDPEL 10 69 604.3212583886041 1206.627963844008 2 604.3214111328125 MULTI HCD FTMS 0 0 0 21271 292473.84375 0.43818743289654877 8 -0.1886138916015625 5 Unmodified _LPPWLQDPEL_ ENSG00000154124|ENST00000284274|OTULIN 28.494509381512117 0.24525010509582015 2 DPE{I|L} 4 6 37.167 0 0 3.0802 0 0 734.4114821226653 0 734.4114821226653 0 2.6880324195912806 0 0 0 1 0 0 0 + DPE{I|L} 3.0802 + + 657 NaN NaN 153721.8 NaN 17118 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21277 86.482 NaN 584060 35 0 106290 0.261 + 32181 VYSTMLVFF 9 69 561.7809970731696 1121.547441213139 2 561.79541015625 MULTI HCD FTMS 0 0 0 21271 81668.84375 0.3087223229349449 7 -0.175933837890625 6 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ ENSG00000104613|ENST00000397977|INTS10 44.40701690623563 0.04511410083598184 2 {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 45.477 0 0 4.0549 0 0 597.2469959943375 0 597.2469959943375 0 27.447948812343515 0 0 0 1.6549471895720984 0 0 0 + {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0549 + + 441 NaN NaN 175648.5 NaN 17119 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21278 86.485 NaN 237250 35 0 30431 0.261 + 5398 FGTLSEELYQ 10 72 593.785514925693 1185.5564769181858 2 593.7861938476562 MULTI HCD FTMS 0 0 0 21271 115721.546875 0.8723052942916855 7 -0.175933837890625 7 Unmodified _FGTLSEELYQ_ REV__ENST00000492337.5_1_3:181328352-181417456:+|nuORF 6.2057823575117 0.44245551207394906 2 W 1 -1 14.604 0 0 1.2318 0 0 981.4671499912312 0 981.4671499912312 0 11.10924374808178 0 0 0 0 0 0 0 W 1.2318 - 24 + NaN NaN 117616.8 NaN 17120 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21279 86.489 NaN 197170 35 0 18660 0.263 -1 MVLAAPLLL 9 44 491.8038131588679 981.5930733845358 2 491.80413818359375 MULTI HCD FTMS 0 0 0 21271 56615.72265625 0.8031032370652095 -2 0.0354461669921875 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MVLAAPLLL_ ENSG00000135414|ENST00000257868|GDF11 14.581692164780916 0.23437375358055648 2 {I|L}{I|L} 2 -1 25.217 0 0 2.5689 0 0 737.4165942881679 0 737.4165942881679 0 16.677353201839438 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.5689 + + 27 NaN NaN 137468.7 NaN 17121 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21280 86.492 NaN 57340 35 0 4318.1 0.261 -1 0 39 436.77471307099665 871.5348732087933 2 436.7742919921875 MULTI HCD FTMS 0 0 0 21271 38988.54296875 0.021735813980277175 25 -0.542449951171875 9 NaN NaN 2 Q 1 -1 3.9794 0 0 0.4566 0 0 523.3442736988309 217.1075838678344 740.4518575666652 0 0 0 0 0 0 0 0 0 Q 0.4566 - 7 + NaN NaN 98189.2 NaN 17122 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21281 86.495 NaN 54454 35 0 9518.5 0.261 + 8062 GHVPFDSF 8 38 453.2097732832681 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 21271 31210.66796875 0.730649597910635 -3 0.0450286865234375 10 Unmodified _GHVPFDSF_ REV__ENSG00000141458|ENST00000269228|NPC1;REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF;REV__NPC1-ANKRD29|1|fusion 0.7936320650641473 0.38822285293237185 2 P 1 -1 5.4846 0 0 0.60643 0 0 530.5102315257175 273.8263338678344 804.3365653935518 0 0 0 0 0 0 0 0 0 P 0.60643 + + 1 + NaN NaN 95341.9 NaN 17123 4156 21271 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21283 86.5 NaN 2962200 35 0 135250 0.327 + 403 AKFRKQERA 9 121 567.3303563093277 1132.6461596854554 2 567.3305053710938 MULTI HCD FTMS 0 0 0 21282 3627008.75 0.8650840619617648 1 -0.026153564453125 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 6.2057823575117 0.30397260197431997 2 NQK 3 8 12.039 0 0 1.0629 0 0 476.3093809762741 283.11886834662533 759.4282493228994 0 0 0 0 0 0.4247425010840047 0 0 0 NQK 1.0629 - 385 + NaN NaN 368048.7 NaN 17124 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21284 86.505 NaN 454210 35 0 219000 0.261 -1 0 63 584.3563254708603 1166.6980980085204 2 584.3565063476562 MULTI HCD FTMS 0 0 0 21282 311547.9375 0.4946047362824862 -6 0.1233673095703125 2 NaN NaN 2 A 1 -1 5.4846 0 0 0.47009 0 0 122.10265797989048 970.5391329400999 1092.6417909199904 0 0 0 0 0 0 0 0 0 A 0.47009 - 11 + NaN NaN 151958.9 NaN 17125 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21285 86.508 NaN 738960 35 0 70687 0.261 + -1 QGWSCLCDLL 10 75 626.2787674018078 1250.5429818704156 2 626.2793579101562 MULTI HCD FTMS 0 0 0 21282 445798.6875 0.11642582059650128 -6 0.1233673095703125 3 2 Carbamidomethyl (C) _QGWSC(Carbamidomethyl (C))LC(Carbamidomethyl (C))DLL_ REV__ENSG00000146918|ENST00000356309|NCAPG2;REV__ENST00000432615.5_1_7:158447451-158457424:-|nuORF;REV__ENST00000467785.5_1_7:158448006-158486027:-|nuORF;REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 29.081581746732265 0.240155558137004 2 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 N{[MS]|[{M(Oxidation (M))|F}A]} + + 68.638 1.9627 0.56051 5.4886 5.4886 63.055 0 0 0 14.392404878284268 0 0 0 0 2.9291746928241125 0 0.6694451763165201 0 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 5.4886 - 650 + NaN NaN 213318.5 NaN 17126 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21286 86.511 NaN 418520 35 0 43715 0.261 + 8449 GYYWTEGQW 9 80 595.2527141517623 1188.4908753703246 2 595.251220703125 MULTI HCD FTMS 0 0 0 21282 143601.546875 0.5015677644019083 -4 0.08112335205078125 4 Unmodified _GYYWTEGQW_ REV__ENSG00000076108|ENST00000549884|BAZ2A;REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A;REV__nc|ENSG00000076108|Q9UIF9-3|BAZ2A;REV__nc|ENSG00000076108|Q9UIF9|BAZ2A 32.30548876998284 0.10066689432505688 2 [YN]AST{M(Oxidation (M))|F}T{[CP]|[EA]}W 10 -1 + 97.162 0 0 8.1753 8.1753 90.02 0 0 0 11.26740798742712 5.766984628895088 5.766984628895088 5.766984628895088 0 3.1237125054200234 1.5228787452803376 1.274227503252014 0.6861818737241735 [YN]AST{M(Oxidation (M))|F}T{[CP]|[EA]}W;[YN]AST{M(Oxidation (M))|F}T[PS]{[DS]|[MA]|[CV]|TT};[YN]AST{M(Oxidation (M))|F}TW{[CP]|[EA]};[YG]GAST{M(Oxidation (M))|F}T{[CP]|[EA]}W;[YG]QST{M(Oxidation (M))|F}T{[CP]|[EA]}W;Q[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}TSAG{[DS]|[MA]|[CV]|TT};{[MS]|[{M(Oxidation (M))|F}A]}WT{M(Oxidation (M))|F}TSAG{[DS]|[MA]|[CV]|TT};[YN]AST{M(Oxidation (M))|F}[WD]W;[YN]AST{M(Oxidation (M))|F}T{[DA]|[EG]}{[CP]|[EA]};Q[{M(Oxidation (M))|F}E]T{M(Oxidation (M))|F}TSQ{[DS]|[MA]|[CV]|TT} 8.1753;7.69;7.2523;7.2272;6.8306;6.7646;6.578;6.5739;6.4812;6.368 -;-;-;-;-;-;-;-;-;- 3473 NaN NaN 166288.4 NaN 17127 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21287 86.515 NaN 565750 35 0 118730 0.261 -1 SNRMHCCDML 10 77 641.7435526958336 1281.4725524584671 2 642.244384765625 MULTI HCD FTMS 0 0 0 21282 96228.390625 0.09678442926920525 -6 0.1233673095703125 5 Carbamidomethyl (C),Oxidation (M) _SNRM(Oxidation (M))HC(Carbamidomethyl (C))CDML_ nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C 2.9952420565917617 0.4594494122822477 2 SAR 3 -1 16.242 0 0 1.2674 0 0 0 964.2636202447874 964.2636202447874 2.289332277134621 0 0 0 0 0 0 0 0 SAR 1.2674 - 45 + NaN NaN 167495.8 NaN 17128 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21288 86.518 NaN 229600 35 0 28598 0.262 + 1482 AYSVLFETF 9 71 538.7685368826532 NaN 0 538.7874145507812 PEAK HCD FTMS 0 0 0 21282 7657.8447265625 0.3578956376404071 1 -0.026153564453125 6 Unmodified _AYSVLFETF_ ENSG00000162104|ENST00000294016|ADCY9 11.640296217721598 0.23883959125015683 2 KT 2 8 10.445 0 0 0.97118 0 0 166.03459069902027 677.3334444635374 843.3680351625576 0 0 0 0 0 0.4247425010840047 0 0 0 KT 0.97118 - 43 + NaN NaN 120478.5 NaN 17129 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21289 86.521 NaN 297770 35 0 35720 0.261 -1 ILNCYTCAYM 10 60 634.2615973952308 1266.5086418572614 2 634.26123046875 MULTI HCD FTMS 0 0 0 21282 90673.7421875 0.095089309356792 -6 0.1233673095703125 7 Carbamidomethyl (C),Oxidation (M) _ILNC(Carbamidomethyl (C))YTCAYM(Oxidation (M))_ ENSG00000134940|ENST00000533904|ACRV1;nc|ENSG00000134940|P26436-10|ACRV1;nc|ENSG00000134940|P26436-2|ACRV1;nc|ENSG00000134940|P26436-3|ACRV1;nc|ENSG00000134940|P26436-4|ACRV1;nc|ENSG00000134940|P26436-5|ACRV1;nc|ENSG00000134940|P26436-6|ACRV1;nc|ENSG00000134940|P26436-7|ACRV1;nc|ENSG00000134940|P26436-9|ACRV1 9.38312468134398 0.42334543440173333 2 NDE[NS]{I|L} 6 -1 34.966 0 0 2.7608 0 0 576.2352772443375 0 576.2352772443375 0 27.976146931408294 0 0 0 0.5 0 0.8494850021680094 0.3054621874040891 NDE[NS]{I|L} 2.7608 - 49 NaN NaN 130467.2 NaN 17130 4157 21282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21291 86.526 NaN 597610 35 0 124420 0.327 + 22326 QPISVDWCF 9 60 547.7524140510033 1093.4902751688064 2 547.7527465820312 MULTI HCD FTMS 0 0 0 21290 412420.8125 0.6630317845118793 4 -0.0876922607421875 1 Unmodified _QPISVDWCF_ ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A 81.89019881105858 0.005240739447516426 2 {I|L}CKKDWC{M(Oxidation (M))|F} 8 5 60.227 0 0 5.5077 0 0 51.99990277679678 0 51.99990277679678 0 51.99986893552975 0 0 0 0.805462187404089 0 0.7742275032520141 0.805462187404089 {I|L}CKKDWC{M(Oxidation (M))|F} 5.5077 - 140 + NaN NaN 172274 NaN 17131 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21292 86.531 NaN 704410 35 0 34393 0.261 + 35382 YYDLQEVLL 9 103 578.3007742609985 1154.586995588797 2 578.3206787109375 MULTI HCD FTMS 0 0 0 21290 166886.5 0.9173102640546426 1 -0.02613067626953125 2 Unmodified _YYDLQEVLL_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 38.175570920033316 0.07371992880350783 2 EV{I|L}{I|L} 4 5 44.993 0 0 3.8969 0 0 682.2959587916679 0 682.2959587916679 0 37.18887842631325 0 0 0 1.305462187404089 0 0 0 + EV{I|L}{I|L} 3.8969 + + 616 NaN NaN 208901 NaN 17132 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21293 86.534 NaN 443670 35 0 42829 0.261 + 12891 KYFSFPVFF 9 76 591.3051090873345 1180.5956652414689 2 591.30517578125 MULTI HCD FTMS 0 0 0 21290 219658.765625 0.17153987845285637 9 -0.18431854248046875 3 Unmodified _KYFSFPVFF_ ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;nc|ENSG00000133059|Q6XUX3-3|DSTYK 45.69961567697781 0.039180348357221985 2 [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 50.608 0 0 4.2866 4.2866 90.063 0 0 0 37.4202997895334 2.4152153434486223 2.4152153434486223 37.754537344402905 0 2.3494850021680094 0 0 0 + + [YK]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}[VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[C(Carbamidomethyl (C))R][{I|L}P][WR]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2866;1.0887 +;- + 209 + NaN NaN 157310.7 NaN 17133 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21294 86.538 NaN 218590 35 0 47069 0.261 + -1 MYDLDSFI 8 53 510.22303678975896 1018.431520646318 2 510.2230529785156 MULTI HCD FTMS 0 0 0 21290 231998.078125 0.9846080116244125 1 -0.02613067626953125 4 Oxidation (M) _M(Oxidation (M))YDLDSFI_ REV__ENSG00000140105|ENST00000392882|WARS1;REV__ENST00000554084.5_1_14:100819360-100828234:-|nuORF;REV__nc|ENSG00000140105|P23381-2|WARS1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.45208 0 0 129.9738923277617 738.3701265924436 868.3440189202054 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45208 + + 4 + NaN NaN 117444.7 NaN 17134 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21295 86.541 NaN 459930 35 0 57328 0.261 -1 0 97 545.3169038290621 1088.619254724924 2 545.317138671875 MULTI HCD FTMS 0 0 0 21290 173252.78125 0.04199490185227873 76 -1.8695907592773438 5 NaN NaN 2 Y{I|L}K 3 -1 13.878 0 0 1.2748 0 0 220.1314055339639 461.2056063287719 681.3370118627358 0 0 0 0 0 0.28872548999643577 0 0 0 Y{I|L}K 1.2748 - 110 + NaN NaN 169949.4 NaN 17135 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21296 86.544 NaN 576580 35 0 103210 0.261 + 27430 SYVDLVEGLHD 11 62 623.8010142143061 1245.587475495412 2 623.8009033203125 MULTI HCD FTMS 0 0 0 21290 261605.71875 0.21445031860976765 -5 0.10727691650390625 6 Unmodified _SYVDLVEGLHD_ ENSG00000115661|ENST00000396738|STK16;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENST00000496443.5_1_2:220111358-220112169:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF 4.897010918128616 0.3974440401582579 2 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 10 41.041 0 0 3.2949 0 0 148.12112882564367 0 148.12112882564367 0 8.300756084811809 0 0 0 0 0 1.3494850021680094 0 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 3.2949 - 981 + NaN NaN 172846.4 NaN 17136 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21297 86.548 NaN 267480 35 0 33970 0.262 + 3413 EFDAVLADF 9 58 513.7426457287775 1025.4707385243548 2 513.7427978515625 MULTI HCD FTMS 0 0 0 21290 75221.8671875 0.554059537870886 2 -0.0455474853515625 7 Unmodified _EFDAVLADF_ ENSG00000102760|ENST00000379359|RGCC;nc|ENSG00000102760|Q9H4X1-2|RGCC 71.13359017698441 0.008721403657255008 2 {[{M(Oxidation (M))|F}D]|MM}AEV{I|L}AD{M(Oxidation (M))|F} 9 2 + 69.063 0 0 6.7348 6.7348 92.066 0 0 0 3.65279269351241 51.104699792700586 3.65279269351241 15.725599829726427 0 2 0 1.274227503252014 0 {[{M(Oxidation (M))|F}D]|MM}AEV{I|L}AD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}AEV{I|L}W{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}A[{I|L}T][TP]D{M(Oxidation (M))|F} 6.7348;5.2013;1.9678 -;-;- 147 NaN NaN 135153.5 NaN 17137 4158 21290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21299 86.552 NaN 1857900 35 0 138670 0.327 + 19729 NYASTFTWW 9 107 588.2614196761228 1174.5082864190456 2 588.2613525390625 MULTI HCD FTMS 0 0 0 21298 1081160.25 0.8404077083346896 -2 0.05228424072265625 1 Unmodified _NYASTFTWW_ ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 163.03601447609117 7.615514112917802E-09 2 [YN]AST{M(Oxidation (M))|F}TWW 9 0 + 118.16 0 0 10.06 10.06 97.223 0 0 0 17.385606273598313 14.515449934959719 14.515449934959719 21.60219694675405 0 3.1549471895720984 1.3979400086720375 1.555462187404089 1.024227503252014 + + [YN]AST{M(Oxidation (M))|F}TWW;[YN]ASTT{M(Oxidation (M))|F}WW;[YG]GAST{M(Oxidation (M))|F}TWW;[YG]QST{M(Oxidation (M))|F}TWW;{[CT]|[{M(Oxidation (M))|F}G]}{[DA]|[EG]}T{M(Oxidation (M))|F}TSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}[SG]ST{M(Oxidation (M))|F}TWW;{[CT]|[{M(Oxidation (M))|F}G]}WT{M(Oxidation (M))|F}TS[SG]W;[YG]GASTT{M(Oxidation (M))|F}WW;[YN][DV]{M(Oxidation (M))|F}TSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}T{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{[DS]|[MA]|[CV]|TT} 10.06;8.221;7.7852;7.4794;7.3057;6.7617;6.3423;6.2229;5.8439;5.827 +;-;-;-;-;-;-;-;-;- + 17148 NaN NaN 381329.4 NaN 17138 4159 21298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21300 86.557 NaN 1340100 35 0 394820 0.261 + 28416 TPFLYDLVM 9 86 557.7782863812777 1113.5420198293552 2 557.7783813476562 MULTI HCD FTMS 0 0 0 21298 892575.3125 0.716705970088582 -2 0.05228424072265625 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 125.62461146993168 0.0008703235425492373 2 M{I|L}YD{I|L}V{M(Oxidation (M))|F} 7 3 73.638 0 0 6.6129 0 0 214.13247878242345 0 214.13247878242345 0 62.21085733450202 0 0 0 2.6861818737241734 0 1.1861818737241734 0 M{I|L}YD{I|L}V{M(Oxidation (M))|F} 6.6129 - 895 NaN NaN 304045.7 NaN 17139 4159 21298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21301 86.56 NaN 351700 35 0 30885 0.261 + 34126 YNTPGSYVCVC 11 89 603.2510139841407 1204.4874750350814 2 604.2562255859375 MULTI HCD FTMS 0 0 0 21298 98794.7734375 0.5831003986894302 -4 0.10134124755859375 3 Unmodified _YNTPGSYVCVC_ ENSG00000184164|ENST00000328268|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF;nc|ENSG00000184164|Q6UXH1-2|CRELD2;nc|ENSG00000184164|Q6UXH1-4|CRELD2;nc|ENSG00000184164|Q6UXH1-5|CRELD2;nc|ENSG00000184164|Q6UXH1-6|CRELD2 16.149105407346934 0.31637472687818013 2 [YN]AST{M(Oxidation (M))|F}TPC{[DS]|[MA]|[CV]|TT} 11 6 + 56.917 0 0 4.7254 4.7254 82.851 0 0 0 15.228787452803374 2.0738108365349817 2.0738108365349817 2.0738108365349817 0 0.25 1.5228787452803376 0.5994850021680094 0.3252574989159953 [YN]AST{M(Oxidation (M))|F}TPC{[DS]|[MA]|[CV]|TT};[YN]AST{M(Oxidation (M))|F}TW{[ES]|[DT]|[{I|L}C]};[YN]A[HT]PTPC{[DS]|[MA]|[CV]|TT};[YN]AST{M(Oxidation (M))|F}T{[DA]|[EG]}{[ES]|[DT]|[{I|L}C]};[YN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}TPC{[DS]|[MA]|[CV]|TT};[YN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}TW{[ES]|[DT]|[{I|L}C]};[YG]CPT{M(Oxidation (M))|F}TSAG{[DS]|[MA]|[CV]|TT};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}WT{M(Oxidation (M))|F}TSAG{[DS]|[MA]|[CV]|TT};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}WT{M(Oxidation (M))|F}TSQ{[DS]|[MA]|[CV]|TT};[YG]CPT{M(Oxidation (M))|F}TS[SG]W 4.7254;4.5532;3.9989;3.7924;3.6224;3.4539;3.2919;3.2417;3.1935;3.191 -;-;-;-;-;-;-;-;-;- 2723 NaN NaN 144419.2 NaN 17140 4159 21298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21302 86.564 NaN 38735 35 0 5192.2 0.261 + 9514 HQIGFNMGR 9 33 530.2623885185711 NaN 0 530.311279296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _HQIGFNMGR_ REV__ENST00000393792.2_1_5:171661209-171661293:-|nuORF 4.3292370932331545 0.2742679634796037 2 G 1 -1 6.9897 0 0 0.66033 0 0 680.3154742033547 318.15598474674067 998.4714589500954 0 0 0 0 0 0 0 0 0 G 0.66033 + + 3 + NaN NaN 98258.3 NaN 17141 4159 21298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21303 86.567 NaN 162790 35 0 18426 0.261 -1 SFFMGFMD 8 44 499.1933413789975 996.372129824795 2 499.1940002441406 MULTI HCD FTMS 0 0 0 21298 56077.46875 0.4684068661758713 -6 0.1334075927734375 5 Oxidation (M) _SFFMGFM(Oxidation (M))D_ ENSG00000205978|ENST00000382554|NYNRIN;NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant 2.577480529830294 0.5381683276125971 2 EV[{I|L}T] 4 -1 13.188 0 0 1.3236 0 0 536.1187608639726 0 536.1187608639726 0 1.5051499783199045 0 0 0 0 0 0 0 EV[{I|L}T] 1.3236 - 18 + NaN NaN 116513.5 NaN 17142 4159 21298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21305 86.572 NaN 1256800 35 0 61390 0.327 -1 0 109 575.8429850378634 1149.6714171425267 2 575.84326171875 MULTI HCD FTMS 0 0 0 21304 1392901.5 0.6937814691587535 4 -0.08081817626953125 1 NaN NaN 2 D 1 -1 10.234 0 0 0.89013 0 0 61.052595810782414 970.5431293428941 1031.5957251536765 0 0 0 0 0 0.4247425010840047 0 0.28872548999643577 0 D 0.89013 - 196 + NaN NaN 298764.8 NaN 17143 4160 21304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21306 86.576 NaN 244490 35 0 27030 0.261 + 17703 MATLHCQESEG 11 83 603.2510139841407 1204.4874750350814 2 603.248046875 MULTI HCD FTMS 0 0 0 21304 115702.3125 0.581215759636672 -3 0.0717010498046875 2 Unmodified _MATLHCQESEG_ ENSG00000166086|ENST00000299106|JAM3;ENST00000531302.5_1_11:133938984-134014985:+|nuORF;nc|ENSG00000166086|Q9BX67-2|JAM3 21.536976647645854 0.2694300281126922 2 [YN]AST{M(Oxidation (M))|F}TGC(Carbamidomethyl (C))GQ 11 11 + 75.712 0 0 6.2858 6.2858 86.685 0 0 0 14.236387966791291 5.58790674739322 5.58790674739322 5.58790674739322 0 2.504432191740108 2 0.3494850021680094 0.3252574989159953 [YN]AST{M(Oxidation (M))|F}TGC(Carbamidomethyl (C))GQ;[YN]AST{M(Oxidation (M))|F}T{[CP]|[EA]}{[DS]|[MA]|[CV]|TT};[YN]AST{M(Oxidation (M))|F}TG[CG]GQ;[YN]AST{M(Oxidation (M))|F}T[C(Carbamidomethyl (C))N]Q;[YN]AST{M(Oxidation (M))|F}T{[DS]|[MA]|[CV]|TT}{[CP]|[EA]};Q[YE]T{M(Oxidation (M))|F}TSAG{[DS]|[MA]|[CV]|TT};[YG]GAST{M(Oxidation (M))|F}TGC(Carbamidomethyl (C))GQ;Q[YE]T{M(Oxidation (M))|F}TSQ{[DS]|[MA]|[CV]|TT};[YG]QST{M(Oxidation (M))|F}TGC(Carbamidomethyl (C))GQ;[YN]AST{M(Oxidation (M))|F}[WD]{[DS]|[MA]|[CV]|TT} 6.2858;5.8219;5.5279;5.5132;5.1039;4.9779;4.9232;4.6358;4.5782;4.4117 -;-;-;-;-;-;-;-;-;- 1786 NaN NaN 139159.8 NaN 17144 4160 21304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21307 86.58 NaN 582890 35 0 79562 0.264 + -1 NSIDMEDWEL 10 72 423.17649302364913 1266.5076496711474 3 423.5111083984375 MULTI HCD FTMS 0 0 0 21304 76594.28125 0.1840496514607366 -3 0.0717010498046875 3 Oxidation (M) _NSIDM(Oxidation (M))EDWEL_ REV__ENSG00000151320|ENST00000280979|AKAP6 5.40270961882225 0.4467063037482923 2 NA{M(Oxidation (M))|F} 3 -1 45.177 0 0 3.5671 0 0 0 931.3364679357595 931.3364679357595 26.197887582883936 0 0 0 0 0.5 1.6989700043360187 0 0 NA{M(Oxidation (M))|F} 3.5671 - 19 + NaN NaN 184901.8 NaN 17145 4160 21304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21308 86.583 NaN 212040 35 0 34173 0.261 + 17797 MFHANLGF 8 46 468.72352440266894 935.4324958721379 2 468.7232971191406 MULTI HCD FTMS 0 0 0 21304 35998.7890625 0.2603036367810565 -3 0.0717010498046875 4 Unmodified _MFHANLGF_ nc|ENSG00000274150|A8MWK0|FADS2B 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 7 16.99 0 0 1.8162 0 0 770.3534838865895 0 770.3534838865895 0 3.1774187340745623 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.8162 + + 12 + NaN NaN 142289.7 NaN 17146 4160 21304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21309 86.586 NaN 214300 35 0 42547 0.261 -1 CERTTHPPSVL 11 44 432.8851631192982 NaN 0 432.88531494140625 PEAK HCD FTMS 0 0 0 21304 150517.765625 0.6632352835877455 -44 1.1378021240234375 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))ERTTHPPSVL_ ENST00000367649.7_1_1:178063812-178269245:+|nuORF 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 126293.8 NaN 17147 4160 21304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21310 86.59 NaN 160130 35 0 15823 0.261 -1 LDCFEVTL 8 58 498.7390930356528 995.4636331381056 2 498.73907470703125 MULTI HCD FTMS 0 0 0 21304 13081.216796875 0.09482685729495849 -5 0.120758056640625 6 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))FEVTL_ ENSG00000168005|ENST00000294244|SPINDOC 26.88365393820708 0.39599352634412927 2 EVT{I|L} 4 -1 43.928 0 0 4.4128 0 0 535.209883411713 0 535.209883411713 0 36.938200260161125 0 0 0 1.5 0 0 0 EVT{I|L} 4.4128 + + 28 NaN NaN 116836.7 NaN 17148 4160 21304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21312 86.594 NaN 1007500 35 0 160810 0.327 + 22827 QYLPYISYL 9 71 580.3053092177329 1158.5960655022657 2 580.3053588867188 MULTI HCD FTMS 0 0 0 21311 575584.875 0.26042511127799084 -7 0.16602325439453125 1 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 71.92227651296345 0.008466197542043549 2 [YQ]{I|L}PY{I|L}SY{I|L} 9 0 + 64.77 0 0 5.5904 5.5904 84.194 0 0 0 2.1163560816446463 7.881193382687364 2.1163560816446463 2.1163560816446463 0 1.9826446478103827 0 1 0.6861818737241735 + + [YQ]{I|L}PY{I|L}SY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PY{I|L}SY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[KS]RRSY{I|L} 5.5904;5.4078;2.6851 +;-;- + 348 NaN NaN 254142.5 NaN 17149 4161 21311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21313 86.599 NaN 1247300 35 0 147690 0.261 -1 0 105 544.6035097056689 1630.7886997172066 3 544.6033325195312 MULTI HCD FTMS 0 0 0 21311 594749.5625 0.4610790109566912 -4 0.094482421875 2 NaN NaN 2 YY{I|L}{I|L}KD{M(Oxidation (M))|F}A{I|L} 9 -1 84.356 0 0 5.1727 0 0 486.17015273261876 0 486.17015273261876 0 57.255135154483085 0 0 0 2.6989700043360187 0 0 0.4247425010840047 YY{I|L}{I|L}KD{M(Oxidation (M))|F}A{I|L} 5.1727 - 2207 NaN NaN 281244.7 NaN 17150 4161 21311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21314 86.602 NaN 334710 35 0 44625 0.261 + 29035 TYFDLWIML 9 60 601.303109311979 1200.591665690758 2 601.3035278320312 MULTI HCD FTMS 0 0 0 21311 142510.8125 0.022141132485047905 21 -0.434600830078125 3 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 16.942295170755138 0.21397866736869717 2 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 52.669 0 0 4.3869 4.3869 84.126 0 0 0 6.524947271955455 6.524947271955455 6.524947271955455 6.524947271955455 0 1.805462187404089 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MG]|[TS]}YV{I|L} 4.3869;3.8434 -;- 125 NaN NaN 144942.5 NaN 17151 4161 21311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21315 86.606 NaN 307740 35 0 34624 0.261 + 15230 LNYCQKESWC 10 71 637.2701231879099 1272.5256934426197 2 637.2704467773438 MULTI HCD FTMS 0 0 0 21311 184444.046875 0.8004189777458333 -2 0.04219818115234375 4 Unmodified _LNYCQKESWC_ ENSG00000174871|ENST00000311445|CNIH2;ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF 5.731851221503515 0.44496410492002586 2 D{[MS]|[{M(Oxidation (M))|F}A]}[DP]{I|L}{I|L} 7 10 20.634 0 0 1.6215 0 0 483.17268569160314 0 483.17268569160314 0 5.919737864014712 0 0 0 0.8807196863200843 0 0.4247425010840047 0 D{[MS]|[{M(Oxidation (M))|F}A]}[DP]{I|L}{I|L} 1.6215 - 98 NaN NaN 148640.5 NaN 17152 4161 21311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21316 86.609 NaN 369680 35 0 89112 0.261 + 14507 LFCFWVFF 8 72 554.7714029004011 NaN 0 554.7715454101562 PEAK HCD FTMS 0 0 0 21311 169306.5625 0.6507808352616905 12 -0.2496185302734375 5 Unmodified _LFCFWVFF_ REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF 24.20995872069341 0.3821035703978675 2 {M(Oxidation (M))|F}V 2 -1 25.217 0 0 2.2768 0 0 696.3129036017802 162.05611597232658 858.3690195741068 0 0 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}V 2.2768 - 94 + NaN NaN 154747.5 NaN 17153 4161 21311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21318 86.614 NaN 26888000 35 0 6029200 0.327 + 18912 NAFEDSFSSIL 11 92 615.2881211953153 1228.5616894574305 2 615.2886352539062 MULTI HCD FTMS 0 0 0 21317 21330142 0.7600171770577391 -3 0.06156158447265625 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 190.03143192339053 2.41502504821315E-14 2 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 120.4 0 0 9.8004 9.8004 97.454 0 0 0 15.5944107498146 78.43801759575447 15.5944107498146 26.250612633917 0 3.524227503252014 0 1.9749073637206092 0.9731975075880328 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[KG]{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]E[NG]S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]D{[QG]|[NA]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}[YG]EE{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{M(Oxidation (M))|F}SD{[CA]|SS}SS{I|L}{I|L};{[WT]|[RM]}{I|L}C[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]SS{I|L}{I|L} 9.8004;7.6637;7.2946;6.8894;6.8752;6.828;6.7927;5.6968;5.6807;5.5384 +;-;-;-;-;-;-;-;-;- + 2669 NaN NaN 739425.2 NaN 17154 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21319 86.618 NaN 1459200 35 0 112810 0.261 + 17345 LYPVTVNMLF 10 94 606.820375738532 1211.626198543864 2 606.8211059570312 MULTI HCD FTMS 0 0 0 21317 364133.84375 0.7816341499016072 1 -0.02599334716796875 2 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 51.629811660486645 0.07186226796122157 2 [Y{I|L}]PVTVCC{M(Oxidation (M))|F} 9 3 58.768 0 0 4.8504 0 0 0 183.1317006062076 183.1317006062076 13.089067193334202 0 0 0 0 1.6382104921644451 1.6989700043360187 1.1549471895720984 0 [Y{I|L}]PVTVCC{M(Oxidation (M))|F} 4.8504 - 945 NaN NaN 307636.1 NaN 17155 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21320 86.622 NaN 3791800 35 0 772690 0.261 + 16482 LSYDASQWE 9 115 549.740692529569 1097.4668321259378 2 549.7406005859375 MULTI HCD FTMS 0 0 0 21317 342063.4375 0.610390075327706 -1 0.0193634033203125 3 Unmodified _LSYDASQWE_ ENSG00000037280|ENST00000261937|FLT4;ENST00000507059.5_1_5:180043993-180056331:-|nuORF;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4 43.85829265575387 0.04763305254408404 2 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 6 + 97.722 0 0 8.9043 8.9043 95.934 0 0 0 70.89448436569874 1.3515187806019213 1.3515187806019213 18.416375079047498 0 1.5114393726401687 1.3979400086720375 1.531234684152075 0.8243923658886187 {I|L}SS{M(Oxidation (M))|F}SDE[WQ];{[QG]|[NA]}{M(Oxidation (M))|F}EDD{M(Oxidation (M))|F}Q{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDS[TP]{[MS]|[{M(Oxidation (M))|F}A]};{I|L}SS{[CA]|SS}RMDC{I|L};{[WT]|[RM]}{[CA]|SS}DD{M(Oxidation (M))|F}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DE[NS]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DEE{[QG]|[NA]};{I|L}SC(Carbamidomethyl (C))TRMDC{I|L};{I|L}SC(Carbamidomethyl (C))TRM[PS]{M(Oxidation (M))|F};{I|L}SCGTRMDC{I|L} 8.9043;7.2262;5.3617;4.7702;4.3739;4.2551;4.1865;4.1764;4.0119;3.4902 -;-;-;-;-;-;-;-;-;- 3896 + NaN NaN 675167.7 NaN 17156 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21321 86.625 NaN 428870 35 0 95552 0.261 + -1 IFMHMKRQ 8 60 561.7809970731696 1121.547441213139 2 561.7949829101562 MULTI HCD FTMS 0 0 0 21317 63705.98046875 0.24081959988763438 13 -0.2788543701171875 4 2 Oxidation (M) _IFM(Oxidation (M))HM(Oxidation (M))KRQ_ REV__ENSG00000074755|ENST00000381638|ZZEF1;REV__ENST00000572426.5_1_17:3937307-3974023:-|nuORF;REV__nc|ENSG00000074755|O43149-2|ZZEF1 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 22.959 0 0 2.0471 0 0 809.3994234521974 0 809.3994234521974 0 12.156818820794937 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0471 + + 77 NaN NaN 151686.2 NaN 17157 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21322 86.628 NaN 521660 35 0 18958 0.261 -1 0 113 597.8564615606568 1193.6983701881136 2 597.856689453125 MULTI HCD FTMS 0 0 0 21317 260489.5625 0.3206408673775311 13 -0.2788543701171875 5 NaN NaN 2 W 1 -1 12.764 0 0 1.0693 0 0 989.6083566156511 0 989.6083566156511 0 2.4027048349240765 0 0 0 0 0 0 0 W 1.0693 - 444 + NaN NaN 183723.6 NaN 17158 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21323 86.632 NaN 2180500 35 0 472370 0.261 + 18089 MNDGCVQWQ 9 89 540.7178533044895 NaN 0 540.7357788085938 PEAK HCD FTMS 0 0 0 21317 24956.546875 0.44621683681647406 -1 0.0193634033203125 6 Unmodified _MNDGCVQWQ_ ENST00000416600.6_1_20:3852035-3852320:+|nuORF 15.847184025352803 0.21527282152051216 2 S{M(Oxidation (M))|F}SDE{M(Oxidation (M))|F} 6 8 43.761 0 0 4.0541 0 0 182.07174305345887 182.0567568414672 364.1284998949261 0 0 0 0 0 0 0 1.110924374808178 0 S{M(Oxidation (M))|F}SDE{M(Oxidation (M))|F} 4.0541 - 433 + NaN NaN 419212.7 NaN 17159 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21324 86.635 NaN 230460 35 0 20134 0.261 + 29770 VEEENPDF 8 58 489.705950157202 977.397347381204 2 489.7059326171875 MULTI HCD FTMS 0 0 0 21317 16321.7265625 0.1666253396122807 3 -0.0613861083984375 7 Unmodified _VEEENPDF_ ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163283|ENST00000392027|ALPP;ENSG00000163286|ENST00000295453|ALPG 5.760428011301431 0.5334459684533844 2 {I|L}AR{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 7 6 32.083 0 0 3.2825 0 0 130.9105032401481 0 130.9105032401481 0 14.88179119276754 0 0 0 0 0 0.2742275032520141 0 {I|L}AR{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 3.2825 - 40 + NaN NaN 126972.2 NaN 17160 4162 21317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21326 86.64 NaN 2406600 35 0 105790 0.327 + 404 AKFRKQERA 9 133 567.3303563093277 1132.6461596854554 2 567.330322265625 MULTI HCD FTMS 0 0 0 21325 2930396.5 0.6989338824667954 7 -0.1227264404296875 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 6.2057823575117 0.30397260197431997 2 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 7 8 12.641 0 0 1.1161 0 0 286.1413728819101 0 286.1413728819101 0 0.16695877563298822 0 0 0 0.7134679910804405 0 0.3807196863200844 0 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 1.1161 - 716 NaN NaN 410583.5 NaN 17161 4163 21325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21327 86.644 NaN 223260 35 0 24409 0.261 + -1 YGLEMFNNW 9 75 595.2527141517623 1188.4908753703246 2 594.2432861328125 MULTI HCD FTMS 0 0 0 21325 129564.2890625 0.6117648382464311 1 -0.0126800537109375 2 Oxidation (M) _YGLEM(Oxidation (M))FNNW_ REV__ENSG00000134343|ENST00000256737|ANO3;REV__ENSG00000151572|ENST00000392977|ANO4;REV__nc|ENSG00000134343|Q9BYT9-2|ANO3;REV__nc|ENSG00000151572|Q32M45-2|ANO4;REV__nc|ENSG00000151572|Q32M45-3|ANO4 6.723162845929126 0.3000504726104499 2 C(Carbamidomethyl (C))W 2 -1 14.949 0 0 1.2578 0 0 824.35258681465 0 824.35258681465 0 3.949791016870064 0 0 0 0 0 0 0 C(Carbamidomethyl (C))W 1.2578 - 84 NaN NaN 123278.7 NaN 17162 4163 21325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21328 86.648 NaN 85810 35 0 5722.6 0.261 + 4852 FADEGSIFYTL 11 46 631.8007164388972 NaN 0 631.8010864257812 PEAK HCD FTMS 0 0 0 21325 33892.80078125 0.7839248441782861 -1 0.02599334716796875 3 Unmodified _FADEGSIFYTL_ ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1 10.799506525563784 0.3114850535502259 2 Y{M(Oxidation (M))|F}{I|L}R 4 10 22.907 0 0 1.8158 0 0 232.14237418463182 447.10712610416255 679.2495002887944 0 0 0 0 0 1 0 0 0 Y{M(Oxidation (M))|F}{I|L}R 1.8158 - 27 + NaN NaN 93717.8 NaN 17163 4163 21325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21330 86.653 NaN 3044500 35 0 274760 0.327 + -1 NAFEPAVQCLC 11 124 626.2787674018078 1250.5429818704156 2 626.2789916992188 MULTI HCD FTMS 0 0 0 21329 1880665.375 0.4911589371868705 1 -0.02271270751953125 1 Carbamidomethyl (C) _NAFEPAVQC(Carbamidomethyl (C))LC_ REV__ENST00000527401.5_1_11:45955351-45955465:-|nuORF 38.61474834105838 0.1458715177421877 2 NA{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 11 -1 N{[MS]|[{M(Oxidation (M))|F}A]} + + 83.318 3.6709 1.0483 6.6626 6.6626 65.043 0 0 0 16.65566658771246 0 0 0 0 2.9291746928241125 0 0.9436726795685342 0 NA{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SN{[MS]|[{M(Oxidation (M))|F}A]} 6.6626 - 7899 + NaN NaN 554256.1 NaN 17164 4164 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21331 86.657 NaN 2006900 35 0 403520 0.261 + -1 AFGGMMMDLYD 11 112 641.7435526958336 1281.4725524584671 2 641.743896484375 MULTI HCD FTMS 0 0 0 21329 792874.125 0.46440584796186524 1 -0.02271270751953125 2 2 Oxidation (M) _AFGGM(Oxidation (M))M(Oxidation (M))MDLYD_ REV__tr|U7SN93|U7SN93_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01861PE=3SV=1 5.731851221503515 0.39378271418728467 2 H{M(Oxidation (M))|F}EAEDE[WQ] 9 -1 42.499 0 0 3.3164 0 0 92.01275279918703 0 92.01275279918703 0 -0.2616568659947589 -0.2616568659947589 0 0 0.6307196863200843 0 1.1643943297944483 0.4247425010840047 H{M(Oxidation (M))|F}EAEDE[WQ] 3.3164 - 1068 + NaN NaN 400574.5 NaN 17165 4164 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21332 86.661 NaN 1132800 35 0 125470 0.261 -1 SCYATQSHQW 10 103 634.2615973952308 1266.5086418572614 2 634.2619018554688 MULTI HCD FTMS 0 0 0 21329 522131.1875 0.5475575708604771 1 -0.02271270751953125 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))YATQSHQW_ EML4-MTA3|1|fusion;ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3 9.38312468134398 0.42334543440173333 2 [{M(Oxidation (M))|F}E]D[W{I|L}]DE{M(Oxidation (M))|F} 8 -1 54.645 0 0 4.3146 0 0 0 182.05594821241826 182.05594821241826 31.095507971723237 0 0 0 0 1.555462187404089 0 1.5189301784845295 0 [{M(Oxidation (M))|F}E]D[W{I|L}]DE{M(Oxidation (M))|F} 4.3146 - 772 NaN NaN 267128.6 NaN 17166 4164 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21333 86.664 NaN 397080 35 0 157730 0.261 -1 0 72 584.3563254708603 1166.6980980085204 2 584.3567504882812 MULTI HCD FTMS 0 0 0 21329 102391.984375 0.1625546323163745 1 -0.02271270751953125 4 NaN NaN 2 PVW 3 -1 13.188 0 0 1.1303 0 0 112.23149752199545 669.2457979791624 781.4772955011579 0 0 0 0 0 0 0 0 0 PVW 1.1303 - 13 + NaN NaN 154723.6 NaN 17167 4164 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21334 86.667 NaN 570660 35 0 74373 0.261 + -1 CDWWRQFWTRL 11 97 551.9308366240331 1652.770680472299 3 552.2650146484375 MULTI HCD FTMS 0 0 0 21329 34165.03515625 0.12735818532479404 1 -0.02271270751953125 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))DWWRQFWTRL_ REV__ENSG00000198089|ENST00000400288|SFI1;REV__ENST00000382162.7_1_22:32002284-32014401:+|nuORF;REV__nc|ENSG00000198089|A8K8P3-10|SFI1;REV__nc|ENSG00000198089|A8K8P3-2|SFI1;REV__nc|ENSG00000198089|A8K8P3-3|SFI1;REV__nc|ENSG00000198089|A8K8P3-4|SFI1;REV__nc|ENSG00000198089|A8K8P3-9|SFI1 0.0732635311334299 0.4185993575453356 2 NE[DG]A 5 -1 35.458 0 0 2.1453 0 0 0 1163.5728732323169 1163.5728732323169 14.488474775526186 0 0 0 0 0.5 1.5228787452803376 0 0 NE[DG]A 2.1453 - 292 + NaN NaN 173769.3 NaN 17168 4164 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21335 86.67 NaN 539730 35 0 54589 0.261 -1 LYQVWSLCI 9 90 591.3051090873345 1180.5956652414689 2 591.2947387695312 MULTI HCD FTMS 0 0 0 21329 56206.09765625 0.043893477835173465 15 -0.3089447021484375 6 Carbamidomethyl (C) _LYQVWSLC(Carbamidomethyl (C))I_ ENST00000371117.7_1_6:51750749-51768419:-|nuORF 24.020572477871973 0.15282392193088168 2 C(Carbamidomethyl (C)){I|L}P[NG][VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 38.848 0 0 3.2906 0 0 131.11165614729913 0 131.11165614729913 0 13.7865314176861 0 0 0 1.4247425010840047 0 0 0.3252574989159953 C(Carbamidomethyl (C)){I|L}P[NG][VP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2906 - 626 + NaN NaN 170758.6 NaN 17169 4164 21329 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21337 86.675 NaN 1337400 35 0 53924 0.327 -1 0 131 589.3429545551332 1176.6713561770664 2 589.3432006835938 MULTI HCD FTMS 0 0 0 21336 691393.75 0.4455292261985023 16 -0.33112335205078125 1 NaN NaN 2 GW{M(Oxidation (M))|F}{M(Oxidation (M))|F}TWW 7 -1 36.777 0 0 3.1255 0 0 148.2092722921039 0 148.2092722921039 0 10.825141431248575 0 0 0 0 0 0.6747425010840047 0 GW{M(Oxidation (M))|F}{M(Oxidation (M))|F}TWW 3.1255 - 2375 + NaN NaN 293162.5 NaN 17170 4165 21336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21338 86.68 NaN 338500 35 0 67844 0.261 + 28158 TIVTSISDEF 10 78 556.2780471237653 1110.5415413143305 2 555.2731323242188 MULTI HCD FTMS 0 0 0 21336 155326.5625 0.789149776037501 14 -0.28623199462890625 2 Unmodified _TIVTSISDEF_ ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5 6.723162845929126 0.4397169348982109 2 [YV]{[HG]|PP}[{M(Oxidation (M))|F}V]WG{M(Oxidation (M))|F} 9 8 [YV]{[HG]|PP}[{M(Oxidation (M))|F}V]W + + 20.969 -23.223 -2.6139 1.8882 1.8882 59.746 0 0 0 0 7.7815125038364386 0 0 0 0 0 0 0 [YV]{[HG]|PP}[{M(Oxidation (M))|F}V]WG{M(Oxidation (M))|F} 1.8882 - 166 + NaN NaN 144679 NaN 17171 4165 21336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21340 86.684 NaN 1198400 35 0 388010 0.327 + 28417 TPFLYDLVM 9 75 557.7782863812777 1113.5420198293552 2 557.7781982421875 MULTI HCD FTMS 0 0 0 21339 827485.5 0.664441184633073 5 -0.1174774169921875 1 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 92.8221339359638 0.0044520161739443126 2 [YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F} 9 4 + 70.367 0 0 6.3192 6.3192 87.687 0 0 0 2.3637155602495596 61.78334379460914 2.3637155602495596 7.923129586313436 0 1 0 1.274227503252014 0 [YT]{I|L}P{M(Oxidation (M))|F}D{I|L}V{M(Oxidation (M))|F};[YT]{I|L}D{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YE]{M(Oxidation (M))|F}P{I|L}V{M(Oxidation (M))|F};[YT]{I|L}PE[{M(Oxidation (M))|F}V]V{M(Oxidation (M))|F};[YT][{M(Oxidation (M))|F}V]EP{I|L}V{M(Oxidation (M))|F} 6.3192;5.6077;4.536;4.2539;3.8725 -;-;-;-;- 491 NaN NaN 268940.9 NaN 17172 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21341 86.689 NaN 1001000 35 0 183590 0.261 + 16369 LSDYEQEHLI 10 79 623.8010142143061 1245.587475495412 2 623.8008422851562 MULTI HCD FTMS 0 0 0 21339 769492.375 0.6307885231829888 3 -0.06508636474609375 2 Unmodified _LSDYEQEHLI_ REV__ENSG00000157483|ENST00000288235|MYO1E 6.2057823575117 0.44245551207394906 2 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 -1 57.643 0 0 4.6278 0 0 148.12120966680965 0 148.12120966680965 0 3.711375162600703 0 0 0 0 0 1.7059771852360797 0.3494850021680094 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 4.6278 - 730 + NaN NaN 238871 NaN 17173 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21342 86.692 NaN 1329300 35 0 71534 0.261 + 19730 NYASTFTWW 9 105 588.2614196761228 1174.5082864190456 2 588.261474609375 MULTI HCD FTMS 0 0 0 21339 558424.3125 0.4340745016721615 5 -0.1174774169921875 3 Unmodified _NYASTFTWW_ ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 163.03601447609117 7.615514112917802E-09 2 [YN]AST{M(Oxidation (M))|F}TWW 9 0 + 95.611 0 0 8.1405 8.1405 95.281 0 0 0 17.930351549531437 14.973024840566467 14.973024840566467 21.721123714783104 0 2.973197507588033 1.0969100130080565 1.4049471895720984 1.180884548956689 + + [YN]AST{M(Oxidation (M))|F}TWW;[YN]ASTT{M(Oxidation (M))|F}WW;{[CT]|[{M(Oxidation (M))|F}G]}{[DA]|[EG]}T{M(Oxidation (M))|F}TSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}C]|[YS]}{[QG]|[NA]}T{M(Oxidation (M))|F}TWW;{[YD]|[{M(Oxidation (M))|F}M]}{[NV]|[RG]}{M(Oxidation (M))|F}TSA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{[NV]|[RG]}{M(Oxidation (M))|F}TS[SG]{[DA]|[EG]};{[YD]|[{M(Oxidation (M))|F}M]}{[NV]|[RG]}{M(Oxidation (M))|F}TS{[C(Carbamidomethyl (C))G]|[NC]}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[NV]|[RG]}{M(Oxidation (M))|F}T[KC]W;{[CT]|[{M(Oxidation (M))|F}G]}WT{M(Oxidation (M))|F}TS[SG]W;{[CT]|[{M(Oxidation (M))|F}G]}[SG]ST{M(Oxidation (M))|F}TWW 8.1405;6.2911;5.6423;5.6142;5.157;5.0588;4.9659;4.955;4.9079;4.8547 +;-;-;-;-;-;-;-;-;- + 4891 NaN NaN 294452.6 NaN 17174 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21343 86.696 NaN 177360 35 0 57012 0.264 + -1 PGMGPAFF 8 57 420.1915034426873 838.3684539521746 2 420.191650390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _PGM(Oxidation (M))GPAFF_ REV__ENSG00000151229|ENST00000280871|SLC2A13;REV__SLC2A13|p.K601Nfs*2|1|0.28|ENSG00000151229|chr12:39760170-39760170|T/-|frameshift_variant 2.8892196856762586 0.5377058178582064 2 R{M(Oxidation (M))|F} 2 -1 17.959 0 0 2.1421 0 0 0 532.1976412408811 532.1976412408811 4.859856381998782 0 0 0 0 0 0 0 0 R{M(Oxidation (M))|F} 2.1421 - 18 + NaN NaN 113428.3 NaN 17175 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21344 86.699 NaN 644590 35 0 130550 0.261 + 27253 SYPDLLPTF 9 54 526.7686321637001 1051.5227113942 2 526.7692260742188 MULTI HCD FTMS 0 0 0 21339 189260.546875 0.13175190905622072 -7 0.13232421875 5 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 74.42276476219924 0.007657080072768255 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[DP]{I|L}[TP]{M(Oxidation (M))|F} 9 2 + 49.371 0 0 4.6952 4.6952 82.196 0 0 0 2.900217704352457 31.377765065485015 2.900217704352457 0.7525749891599531 0 1.3494850021680094 0 1.274227503252014 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[DP]{I|L}[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP][TP]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}[TP]{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{[ET]|[MV]}[TP]{M(Oxidation (M))|F} 4.6952;4.6236;4.0765;2.6245 -;-;-;- 265 NaN NaN 180991.3 NaN 17176 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21345 86.702 NaN 263330 35 0 29511 0.261 + 29036 TYFDLWIML 9 62 601.303109311979 1200.591665690758 2 601.3051147460938 MULTI HCD FTMS 0 0 0 21339 81242.4140625 0.012622193513653089 26 -0.5916976928710938 6 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 16.942295170755138 0.21397866736869717 2 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L} 10 -1 + 51.387 0 0 4.2802 4.2802 88.784 0 0 0 13.940162615404077 27.134928107446186 13.940162615404077 19.931153458833393 0 1.774227503252014 1.6989700043360187 0 0 [YV]{I|L}{[DS]|[MA]|[CV]|TT}DDYV{I|L};[YV]{I|L}[{M(Oxidation (M))|F}T]{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F}{I|L} 4.2802;2.6201 -;- 68 NaN NaN 136310.6 NaN 17177 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21346 86.706 NaN 357250 35 0 60647 0.262 + 31060 VSWFDLEL 8 56 504.75548378535154 1007.4964146375031 2 504.7564392089844 MULTI HCD FTMS 0 0 0 21339 84081.0703125 0.04166445615086127 -11 0.23366546630859375 7 Unmodified _VSWFDLEL_ ENST00000537971.5_1_12:3395045-3395321:+|nuORF 16.942295170755138 0.46913822049235215 2 E{I|L} 2 6 24.464 0 0 2.4282 0 0 747.3590880349109 0 747.3590880349109 0 24.463950151760656 0 0 0 0.3494850021680094 0 0 0 + E{I|L} 2.4282 + + 20 NaN NaN 157425.6 NaN 17178 4166 21339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21348 86.711 NaN 1190000 35 0 54958 0.327 -1 0 114 575.8429850378634 1149.6714171425267 2 575.8431396484375 MULTI HCD FTMS 0 0 0 21347 1211564.75 0.6034605980652314 11 -0.24011993408203125 1 NaN NaN 2 D 1 -1 10.066 0 0 0.87558 0 0 61.05280068088275 970.5444684628148 1031.5972691436975 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.87558 - 554 + NaN NaN 266845.8 NaN 17179 4167 21347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21350 86.717 NaN 2719400 35 0 398680 0.327 + 22828 QYLPYISYL 9 82 580.3053092177329 1158.5960655022657 2 580.3054809570312 MULTI HCD FTMS 0 0 0 21349 2210174.25 1 0 0 1 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 118.89474601620944 0.0014903111061077812 2 [YQ]{I|L}PY{I|L}SY{I|L} 9 0 + 83.088 0 0 7.1715 7.1715 89.175 0 0 0 3.1234684152074976 63.51489551195742 3.1234684152074976 7.798859261803983 0 2.1989700043360187 0 1 1.329689690656103 + + [YQ]{I|L}PY{I|L}SY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PY{I|L}SY{I|L};{[CT]|[{M(Oxidation (M))|F}G]}P{[TV]|[{I|L}S]}Y{I|L}SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}Q{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[AG]{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L} 7.1715;6.4983;4.2652;3.0585;2.2637 +;-;-;-;- + 642 NaN NaN 500947.7 NaN 17180 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21351 86.721 NaN 1601000 35 0 135920 0.261 + 2783 DYFFKPVLF 9 113 588.3109478226573 1174.6073427121146 2 588.3114013671875 MULTI HCD FTMS 0 0 0 21349 613212.375 0.31100393869511833 -5 0.0775909423828125 2 Unmodified _DYFFKPVLF_ ENST00000369452.8_1_10:112723943-112724024:+|nuORF 88.95385435242217 0.004553379958619559 2 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L}{M(Oxidation (M))|F} 9 0 + 87.316 0 0 7.4336 7.4336 94.967 0 0 0 33.520599913279625 16.478174818886373 16.478174818886373 33.520599913279625 0 2.642159058960253 2 0.8296896906561032 0.8494850021680094 + + {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]D{M(Oxidation (M))|F}K[VP]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}[VP]{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][EP]{M(Oxidation (M))|F}VVK{M(Oxidation (M))|F};{[WT]|[RM]}[HC]RVVK{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}M[PG]RT{[QV]|[N{I|L}]|[RA]|[KV]}K;[Y{M(Oxidation (M))|F}][EP]VV{M(Oxidation (M))|F}K{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][EP]{M(Oxidation (M))|F}VV{M(Oxidation (M))|F}K;{[WT]|[RM]}[HC]RVV{M(Oxidation (M))|F}K 7.4336;4.5799;2.0187;1.6518;1.5318;0.95172;0.45609;0.43503;0.31504 +;-;-;-;-;-;-;-;- + 5340 NaN NaN 333258.4 NaN 17181 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21352 86.725 NaN 699840 35 0 95875 0.264 + -1 NAGACTHD 8 66 423.16343534443615 NaN 0 423.17633056640625 PEAK HCD FTMS 0 0 0 21349 12219.4716796875 1 0 0 3 Carbamidomethyl (C) _NAGAC(Carbamidomethyl (C))THD_ REV__ENST00000373713.6_2_1:31840255-31840297:-|nuORF 5.230669730166228 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.54531 0 0 557.185957747663 137.0355166070922 694.2214743547552 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54531 - 12 + NaN NaN 190332 NaN 17182 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21353 86.728 NaN 178110 35 0 40023 0.261 -1 MLGVQGAC 8 44 426.19148807904753 850.3684232248951 2 426.19140625 MULTI HCD FTMS 0 0 0 21349 255005.5 0.6513748022369772 3 -0.08465576171875 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))LGVQGAC(Carbamidomethyl (C))_ ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-2|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR 2.8892196856762586 0.5377058178582064 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 3 -1 17.905 0 0 2.1055 0 0 0 440.1651205728045 440.1651205728045 17.90484985457369 0 0 0 0 0 1.5228787452803376 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 2.1055 - 19 NaN NaN 107024.3 NaN 17183 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21354 86.732 NaN 188710 35 0 18442 0.261 -1 MWATSKDFGM 10 58 595.2527141517623 1188.4908753703246 2 595.2506103515625 MULTI HCD FTMS 0 0 0 21349 79106.6171875 0.2763015440681126 7 -0.17527008056640625 5 Oxidation (M) _M(Oxidation (M))WATSKDFGM_ ENSG00000110455|ENST00000263776|ACCS;ENST00000527346.5_1_11:44101033-44105339:+|nuORF;ENST00000532122.5_1_11:44101033-44103652:+|nuORF;ENST00000534035.1_1_11:44102597-44105415:+|nuORF 16.149105407346934 0.3600587335443843 2 [YN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}T 6 -1 36.884 0 0 3.1035 0 0 0 401.12580286197505 401.12580286197505 28.30075608481181 0 0 0 0 1.3494850021680094 1.5228787452803376 0 0 [YN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}T 3.1035 - 228 + NaN NaN 119939.2 NaN 17184 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21355 86.735 NaN 201000 35 0 35648 0.261 + -1 MKVWLIGLFV 10 65 611.3562998667795 1220.698046800359 2 611.3575439453125 MULTI HCD FTMS 0 0 0 21349 89892.5390625 0.11845103075526953 -9 0.1651458740234375 6 Oxidation (M) _M(Oxidation (M))KVWLIGLFV_ REV__ENSG00000161904|ENST00000293760|LEMD2;REV__LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant 1.4819007175156935 0.4674597685733628 2 M 1 -1 3.9794 0 0 0.32599 0 0 646.352540063834 440.27964197330317 1086.6321820371372 0 0 0 0 0 0 0 0 0 M 0.32599 + + 10 + NaN NaN 139807.7 NaN 17185 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21356 86.738 NaN 107590 35 0 20171 0.262 + -1 TSHLRMCD 8 38 510.22303678975896 1018.431520646318 2 510.22314453125 MULTI HCD FTMS 0 0 0 21349 55543.5234375 0.23572866901485598 11 -0.2440338134765625 7 Carbamidomethyl (C) _TSHLRMC(Carbamidomethyl (C))D_ REV__CON__ENSEMBL:ENSBTAP00000001528 2.302733041254933 0.5385759549224092 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 104609.2 NaN 17186 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21357 86.742 NaN 162640 35 0 44103 0.262 + 2016 DDDDDDDEDAA 11 43 404.12126330454987 NaN 0 404.1211242675781 PEAK HCD FTMS 0 0 0 21349 71296.5859375 0.5381215178366837 -5 0.0775909423828125 8 Unmodified _DDDDDDDEDAA_ REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF 0.4545168274142398 0.3408308101233591 2 Y 1 -1 1.9897 0 0 0.24679 0 0 339.04591908781225 301.1012362115844 640.1471552993967 0 0 0 0 0 0 0 0 0 Y 0.24679 - 1 + NaN NaN 119538.3 NaN 17187 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21358 86.745 NaN 224290 35 0 22229 0.261 + -1 LCPTIEVF 8 65 489.75085824014167 NaN 0 489.7608947753906 PEAK HCD FTMS 0 0 0 21349 17030.794921875 1 0 0 9 Carbamidomethyl (C) _LC(Carbamidomethyl (C))PTIEVF_ REV__ENSG00000221843|ENST00000447166|C2orf16 24.67388899826682 0.38182156912090326 2 AR{I|L}EV 5 -1 37.053 0 0 3.7906 0 0 244.0797061269646 162.05550562076408 406.1352117477287 0 0 0 0 0 0.9247425010840047 0 0.8252574989159953 0 AR{I|L}EV 3.7906 - 59 + NaN NaN 109754.8 NaN 17188 4168 21349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21360 86.75 NaN 2309700 35 0 488240 0.327 + 10691 IPVWDQEFL 9 92 573.7951373046228 1145.5757216760455 2 573.7951049804688 MULTI HCD FTMS 0 0 0 21359 1667305.375 0.4636668047632691 -4 0.074462890625 1 Unmodified _IPVWDQEFL_ ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 92.65332237495696 0.004456439685314431 2 [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L} 9 0 + 91.38 0 0 7.9767 7.9767 94.402 0 0 0 15.228565885290351 85.89503577015617 15.228565885290351 16.197887582883936 0 2.1861818737241734 0.958607314841775 0.6109243748081782 0.6989700043360187 + + [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L};[{I|L}P]VWD[AG]E{M(Oxidation (M))|F}{I|L};[VP]{I|L}WDQE{M(Oxidation (M))|F}{I|L};[{I|L}P]VWDQE{I|L}{M(Oxidation (M))|F};[{I|L}P]VWD[AG]E{I|L}{M(Oxidation (M))|F};[VP]{I|L}WD[AG]E{M(Oxidation (M))|F}{I|L};[VP]{I|L}WDQE{I|L}{M(Oxidation (M))|F};[VP]{I|L}WD[AG]E{I|L}{M(Oxidation (M))|F};[{I|L}P]VWD[YE][KP];[VP]{I|L}WD[YE][KP] 7.9767;6.5628;6.4937;6.463;5.3541;5.0797;4.9799;3.871;2.6372;1.1541 +;-;-;-;-;-;-;-;-;- + 480 NaN NaN 446783.7 NaN 17189 4169 21359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21361 86.754 NaN 807050 35 0 199090 0.261 + 10694 IPVWETETGH 10 86 584.7861426958306 1167.557732458461 2 584.7862548828125 MULTI HCD FTMS 0 0 0 21359 171666.109375 0.5428830762437613 -6 0.10985565185546875 2 Unmodified _IPVWETETGH_ ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295 25.399314129420986 0.2735354021946395 2 {I|L}PVWD 5 6 74.196 0 0 6.3548 0 0 0 554.2226996659718 554.2226996659718 60.199178382953065 0 0 0 0 1.5 1.6989700043360187 0.4247425010840047 0 {I|L}PVWD 6.3548 - 83 + NaN NaN 232549 NaN 17190 4169 21359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21362 86.758 NaN 88795 35 0 9716.5 0.263 + 26267 SQRNICCI 8 40 468.72352440266894 935.4324958721379 2 468.7231750488281 MULTI HCD FTMS 0 0 0 21359 30843.86328125 0.2230288849590957 6 -0.14300537109375 3 Unmodified _SQRNICCI_ REV__ENSG00000144426|ENST00000683969|NBEAL1;REV__NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1;REV__nc|ENSG00000144426|Q6ZS30|NBEAL1 0.7936320650641473 0.540814922690045 2 Q 1 -1 5.7268 0 0 0.61221 0 0 396.28590270983165 408.06882654361567 804.3547292534473 0 0 0 0 0 0.3252574989159953 0 0 0 Q 0.61221 + + 4 + NaN NaN 111781.7 NaN 17191 4169 21359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21364 86.763 NaN 11780000 35 0 2662400 0.327 + 18913 NAFEDSFSSIL 11 102 615.2881211953153 1228.5616894574305 2 615.2886352539062 MULTI HCD FTMS 0 0 0 21363 9514723 0.33902038321856187 5 -0.13013458251953125 1 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 190.03143192339053 2.41502504821315E-14 2 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 125.17 0 0 10.189 10.189 97.748 0 0 0 20.363047730800602 76.33845757479995 20.363047730800602 26.49153736806052 0 3.524227503252014 0 1.9749073637206092 1.450061205686631 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]D{[QG]|[NA]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}YGEE{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}[{M(Oxidation (M))|F}E]SS{I|L}{I|L};{[WT]|[RM]}{I|L}C[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}{[WT]|[RM]}{I|L} 10.189;8.0323;7.8032;7.2391;6.7724;6.3535;6.1069;5.5567;5.3909;5.0662 +;-;-;-;-;-;-;-;-;- + 3535 NaN NaN 630971.8 NaN 17192 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21365 86.767 NaN 2038000 35 0 83042 0.261 + 34825 YRIIEARGR 9 129 567.3303563093277 1132.6461596854554 2 567.3305053710938 MULTI HCD FTMS 0 0 0 21363 2432955.5 0.5802883785467065 14 -0.31964111328125 2 Unmodified _YRIIEARGR_ REV__ENSG00000163106|ENST00000295256|HPGDS 6.2057823575117 0.30397260197431997 2 W 1 -1 11.99 0 0 1.0586 0 0 928.5567106881882 0 928.5567106881882 0 0 0 0 0 0 0 0 0 W 1.0586 - 425 + NaN NaN 402790.6 NaN 17193 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21366 86.771 NaN 1189800 35 0 320520 0.261 + 5831 FPDASFQVVL 10 79 561.7952787985263 1121.5760046638525 2 561.7953491210938 MULTI HCD FTMS 0 0 0 21363 724438.8125 0.5385610099633839 -12 0.23641204833984375 3 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 55.50274090549119 0.0577772802216 2 {M(Oxidation (M))|F}QVV{I|L} 5 5 59.993 0 0 5.349 0 0 517.2174466890671 0 517.2174466890671 0 54.508272069161734 0 0 0 1.9247425010840047 0 0 0.5796896906561032 + {M(Oxidation (M))|F}QVV{I|L} 5.349 + + 199 NaN NaN 273512.1 NaN 17194 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21367 86.774 NaN 1630800 35 0 326840 0.261 + -1 LSRCCSMEL 9 101 549.740692529569 1097.4668321259378 2 549.74072265625 MULTI HCD FTMS 0 0 0 21363 171763.625 0.30650107701823537 7 -0.16544342041015625 4 Carbamidomethyl (C) _LSRC(Carbamidomethyl (C))CSMEL_ REV__chr2:68046043-68047173|108|12.34|0.77|4.01|-|1|C1D,C1D|1 24.020572477871973 0.15282392193088168 2 {I|L}SS{M(Oxidation (M))|F}SDE[WQ] 9 -1 + 81.115 0 0 7.3911 7.3911 95.277 0 0 0 56.161808797313086 0.7378621416091846 0.7378621416091846 40.99205610946156 0 1.1747425010840047 1.154901959985743 1.0941876774005248 0.3054621874040891 {I|L}SS{M(Oxidation (M))|F}SDE[WQ];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DE[NS]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DEE{[QG]|[NA]};{[QG]|[NA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}D{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}DT[DN]{I|L};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}MRE[NS]{I|L};{I|L}SC(Carbamidomethyl (C)){[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QD]|[EN]|[WG]|[KD]|[RS]}E{I|L};[WE]{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}SESS{I|L};[Y{M(Oxidation (M))|F}]{[YC]|[HE]}SESS{I|L};{[WT]|[RM]}{[CA]|SS}[C(Carbamidomethyl (C))C]{I|L}E{I|L} 7.3911;3.656;3.5188;3.001;2.5391;2.2107;1.9931;1.8538;1.6139;1.3663 -;-;-;-;-;-;-;-;-;- 1521 + NaN NaN 337982.4 NaN 17195 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21368 86.777 NaN 292440 35 0 15565 0.261 -1 0 86 597.8564615606568 1193.6983701881136 2 597.8563842773438 MULTI HCD FTMS 0 0 0 21363 238015.8125 0.2929775605483917 21 -0.47400665283203125 5 NaN NaN 2 V 1 -1 5.4846 0 0 0.45946 0 0 165.29891291035648 926.3106604659947 1091.6095733763511 0 0 0 0 0 0 0 0 0 V 0.45946 - 36 + NaN NaN 142846.7 NaN 17196 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21369 86.781 NaN 747420 35 0 56960 0.261 + 17346 LYPVTVNMLF 10 85 606.820375738532 1211.626198543864 2 606.82080078125 MULTI HCD FTMS 0 0 0 21363 177625.875 0.38128411349062946 9 -0.1988983154296875 6 Oxidation (M) _LYPVTVNM(Oxidation (M))LF_ ENSG00000146233|ENST00000275016|CYP39A1 49.55428908609986 0.07941048486997417 2 [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 10 0 + 57.735 0 0 4.7651 4.7651 85.747 0 0 0 20.993624753846092 39.63090892739365 20.993624753846092 9.16453948549924 0 1.2887254899964358 1.5228787452803376 0.4247425010840047 0 + + [Y{I|L}]PVTVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PVTVGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{I|L}]PV[YN][{I|L}A]{I|L}{M(Oxidation (M))|F};[VP][Y{I|L}]TVN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[VP][Y{I|L}]TVGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.7651;4.0087;2.5956;2.4575;1.7012 +;-;-;-;- + 558 NaN NaN 207396.4 NaN 17197 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21370 86.784 NaN 139680 35 0 31401 0.261 + 14284 LCYWCFAHKC 10 46 637.2701231879099 1272.5256934426197 2 637.2705078125 MULTI HCD FTMS 0 0 0 21363 62102.71484375 0.26950282415004273 7 -0.16544342041015625 7 Unmodified _LCYWCFAHKC_ REV__ENSG00000151692|ENST00000320892|RNF144A 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119308.4 NaN 17198 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21371 86.787 NaN 226450 35 0 11989 0.264 + 12234 KLERHSGI 8 67 470.2722705827744 938.5299882323488 2 470.2716979980469 MULTI HCD FTMS 0 0 0 21363 132502.1875 0.14958822991500706 -8 0.14871978759765625 8 Unmodified _KLERHSGI_ REV__ENSG00000183495|ENST00000389561|EP400;REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;REV__nc|ENSG00000183495|Q96L91-3|EP400;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__nc|ENSG00000183495|Q96L91-5|EP400;REV__nc|ENSG00000183495|Q96L91|EP400 7.289230182591677 0.5311777711368266 2 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}V] 5 -1 10.079 0 0 1.0739 0 0 286.1413746564469 0 286.1413746564469 0 -5.340795465430068 -5.340795465430068 0 0 0.7887254899964358 0 0.3494850021680094 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}V] 1.0739 - 40 NaN NaN 126719.3 NaN 17199 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21372 86.791 NaN 643700 35 0 161640 0.261 + -1 QGNKGSDMDI 10 54 540.7356220905476 1079.4566912478952 2 540.736083984375 MULTI HCD FTMS 0 0 0 21363 42829.00390625 0.23777174796989511 5 -0.13013458251953125 9 Oxidation (M) _QGNKGSDM(Oxidation (M))DI_ REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant;REV__DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;REV__ENSG00000197410|ENST00000357232|DCHS2;REV__nc|ENSG00000197410|Q6V1P9-5|DCHS2 18.1463463914782 0.3413772152514074 2 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}S 8 -1 69.621 0 0 6.4496 0 0 0 179.08329311927994 179.08329311927994 44.443284706245905 0 0 0 0 1.8252574989159953 1.5228787452803376 0.7302046884880937 0.4247425010840047 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}S 6.4496 - 202 NaN NaN 185858.9 NaN 17200 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21373 86.794 NaN 315750 35 0 22881 0.261 -1 0 65 531.2496457027006 1060.4847384722011 2 531.2506103515625 MULTI HCD FTMS 0 0 0 21363 91889.4453125 0.060811575587039327 -7 0.1227264404296875 10 NaN NaN 2 {[{M(Oxidation (M))|F}C]|[YS]}WA{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 8 -1 {[{M(Oxidation (M))|F}C]|[YS]} + + 65.667 2.8432 1.1368 6.1922 6.1922 64.219 0 0 0 0 47.1669877129645 0 0 0 2.579689690656103 0 0 0.3494850021680094 {[{M(Oxidation (M))|F}C]|[YS]}WA{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 6.1922 - 370 + NaN NaN 144787.1 NaN 17201 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21374 86.797 NaN 121070 35 0 13135 0.261 -1 LDCFEVTL 8 55 498.7390930356528 995.4636331381056 2 498.73883056640625 MULTI HCD FTMS 0 0 0 21363 52418.5546875 0.3799865778653709 5 -0.13013458251953125 11 Carbamidomethyl (C) _LDC(Carbamidomethyl (C))FEVTL_ ENSG00000168005|ENST00000294244|SPINDOC 32.30548876998284 0.3297748069446609 2 EVT{I|L} 4 -1 42.423 0 0 4.2616 0 0 535.2095270694998 0 535.2095270694998 0 23.241537945111187 0 0 0 1.3494850021680094 0 0 0 EVT{I|L} 4.2616 + + 53 NaN NaN 100787 NaN 17202 4170 21363 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21376 86.802 NaN 1008400 35 0 96963 0.327 + -1 NAFEPAVQCLC 11 96 626.2787674018078 1250.5429818704156 2 626.2788696289062 MULTI HCD FTMS 0 0 0 21375 619486.5 0.16178653309954952 8 -0.1593780517578125 1 Carbamidomethyl (C) _NAFEPAVQC(Carbamidomethyl (C))LC_ REV__ENST00000527401.5_1_11:45955351-45955465:-|nuORF 32.037481411007896 0.18823118669267547 2 NA{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{[QG]|[NA]} 11 -1 {M(Oxidation (M))|F}{[QG]|[NA]} + + 77.873 -0.37901 -0.10824 6.2271 6.2271 64.284 0 0 0 13.627815773883327 0 0 0 0 2.8807196863200843 0 0.6237125054200234 0 NA{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{[QG]|[NA]} 6.2271 - 1223 + NaN NaN 262044.7 NaN 17203 4171 21375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21377 86.807 NaN 431750 35 0 102350 0.261 + 21556 PYLSEVLTF 9 67 534.78427350156 1067.55399406992 2 534.7841186523438 MULTI HCD FTMS 0 0 0 21375 222996.078125 0.8837254562486284 -1 0.039520263671875 2 Unmodified _PYLSEVLTF_ ENSG00000196497|ENST00000354464|IPO4;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;nc|ENSG00000196497|Q8TEX9-2|IPO4 85.35673624503755 0.00464763827098139 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}V{I|L}T{M(Oxidation (M))|F} 9 0 + 70.613 0 0 6.6145 6.6145 88.282 0 0 0 13.721186938815464 35.99870919993087 13.721186938815464 8.010299956639813 0 1.9247425010840047 1.5228787452803376 0.805462187404089 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}V{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[TV]|[{I|L}S]}D{I|L}T{M(Oxidation (M))|F};[{I|L}T][YV]PD{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[TV]|[{I|L}S]}{I|L}DT{M(Oxidation (M))|F};[{I|L}T][YV]P{I|L}DT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ES]|[DT]|[{I|L}C]}N[KA]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[R{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F}{I|L};[{I|L}T]{M(Oxidation (M))|F}V{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}{I|L} 6.6145;5.8641;5.0016;4.7572;3.8946;3.2827;2.2315;1.8587 +;-;-;-;-;-;-;- + 560 NaN NaN 148815.1 NaN 17204 4171 21375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21378 86.81 NaN 688320 35 0 106800 0.261 + 34959 YSPDLASGAPP 11 63 537.7594114593307 1073.5042699854614 2 537.7598876953125 MULTI HCD FTMS 0 0 0 21375 226114.46875 0.5510283562072283 -2 0.05239105224609375 3 Unmodified _YSPDLASGAPP_ REV__ENSG00000206538|ENST00000398399|VGLL3;REV__nc|ENSG00000206538|A8MV65-2|VGLL3 21.536976647645854 0.2694300281126922 2 C{I|L}[DP]{I|L}YG{M(Oxidation (M))|F} 8 -1 59.245 0 0 5.5189 0 0 147.0851548504989 0 147.0851548504989 0 45.26593150440647 0 0 0 2.2302046884880937 0 0.8807196863200843 0 C{I|L}[DP]{I|L}YG{M(Oxidation (M))|F} 5.5189 - 320 + NaN NaN 196488.4 NaN 17205 4171 21375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21379 86.813 NaN 131750 35 0 7206.9 0.261 + 15940 LPPEQRKRSK 10 67 619.8695229941743 1237.7244930551485 2 619.8687133789062 MULTI HCD FTMS 0 0 0 21375 92491.15625 0.23832266321409323 -4 0.09161376953125 4 Unmodified _LPPEQRKRSK_ ENSG00000143375|ENST00000271636|CGN;nc|ENSG00000143375|Q9P2M7-2|CGN 1.6526216038709556 0.46655611578153744 2 A 1 10 5.8412 0 0 0.47193 0 0 149.101276357686 1014.5664766900999 1163.667753047786 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.47193 - 8 + NaN NaN 115453.3 NaN 17206 4171 21375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21380 86.817 NaN 229990 35 0 38476 0.261 + 1788 CLWFFFVF 8 71 554.7714029004011 NaN 0 554.7711181640625 PEAK HCD FTMS 0 0 0 21375 79979.7421875 0.30742626072037765 22 -0.4874114990234375 5 Unmodified _CLWFFFVF_ REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense 17.086550045450526 0.386433553673079 2 E 1 -1 15.485 0 0 1.3981 0 0 813.4067756720927 162.05584131412346 975.4626169862162 0 0 0 0 0 0.5 0 0.5 0 E 1.3981 - 56 + NaN NaN 126095.1 NaN 17207 4171 21375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21382 86.821 NaN 1519400 35 0 251740 0.327 + 18920 NAFEELVAF 9 67 520.2584093062131 1038.5022656792262 2 520.2584228515625 MULTI HCD FTMS 0 0 0 21381 1160904.75 0.13204089645495132 -5 0.1109619140625 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 114.6490535036381 0.0021834323520089267 2 QG{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 2 + 81.513 0 0 7.8491 7.8491 94.655 0 0 0 64.60200035004867 9.085390679490075 9.085390679490075 20 0 2.6989700043360187 0 0.2742275032520141 0 QG{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}EV{I|L}EA{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))E]|[WC]}[{I|L}V]{[DS]|[MA]|[CV]|TT}VA{M(Oxidation (M))|F} 7.8491;5.9233;3.3096 -;-;- 174 + NaN NaN 317563.2 NaN 17208 4172 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21383 86.826 NaN 860750 35 0 275220 0.261 + 28418 TPFLYDLVM 9 74 557.7782863812777 1113.5420198293552 2 557.7782592773438 MULTI HCD FTMS 0 0 0 21381 466347.625 0.3744604206428029 11 -0.23087310791015625 2 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 92.8221339359638 0.0044520161739443126 2 {I|L}YD{I|L}V{M(Oxidation (M))|F} 6 3 69.43 0 0 6.235 0 0 345.1684742658219 0 345.1684742658219 0 56.197887582883936 0 0 0 2.3494850021680094 0 0.805462187404089 0 + {I|L}YD{I|L}V{M(Oxidation (M))|F} 6.235 + + 716 NaN NaN 228252.3 NaN 17209 4172 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21384 86.829 NaN 690310 35 0 75091 0.261 + 26673 SYADQMFLL 9 75 544.260166097148 1086.505779261096 2 544.2601928710938 MULTI HCD FTMS 0 0 0 21381 393092.625 0.4675463754626321 4 -0.08721923828125 3 Unmodified _SYADQMFLL_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 118.0683919894846 0.0016252157255221692 2 {[{M(Oxidation (M))|F}C]|[YS]}ADQM{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 93.814 0 0 8.6345 8.6345 95.242 0 0 0 4.762036441594191 83.63651120157711 4.762036441594191 15.902639302688954 0 2.6237125054200234 0 1.4049471895720984 0.6694451763165201 + + {[{M(Oxidation (M))|F}C]|[YS]}ADQM{M(Oxidation (M))|F}{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}AD[AG]M{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]QD[CS]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV]QDA[MT];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YV][AG]DA[MT];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[VA]|[{I|L}G]}[YG]DA[MT];{[{M(Oxidation (M))|F}C]|[YS]}{[{M(Oxidation (M))|F}D]|MM}{I|L}{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{I|L} 8.6345;7.1708;4.0235;3.3819;2.5344;1.4273;0.12557 +;-;-;-;-;-;- + 308 NaN NaN 193623.2 NaN 17210 4172 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21385 86.833 NaN 365880 35 0 85380 0.261 -1 SAFEFMDAVCM 11 52 641.7435526958336 1281.4725524584671 2 641.7434692382812 MULTI HCD FTMS 0 0 0 21381 292410.34375 0.171271919917981 9 -0.1849212646484375 4 2 Oxidation (M) _SAFEFM(Oxidation (M))DAVCM(Oxidation (M))_ ENSG00000180902|ENST00000321264|D2HGDH;ENST00000436747.5_1_2:242689322-242694075:+|nuORF 2.9952420565917617 0.40578455234410343 2 SA 2 -1 13.188 0 0 1.0291 0 0 0 1120.3660232494785 1120.3660232494785 1.215190243431472 0 0 0 0 0 0 0 0 SA 1.0291 + + 17 + NaN NaN 145351.7 NaN 17211 4172 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21386 86.836 NaN 256020 35 0 41793 0.261 + 7316 FTTEQLHELE 10 57 623.8010142143061 1245.587475495412 2 623.8014526367188 MULTI HCD FTMS 0 0 0 21381 202832.15625 0.16627090852584306 9 -0.1849212646484375 5 Unmodified _FTTEQLHELE_ ENSG00000175329|ENST00000404699|ISX;ISX|p.E98_K99insLHS|1|0.06|ENSG00000175329|chr22:35082582-35082583|-/CTTCACAGT|inframe_insertion 8.745405648335112 0.42901288225909884 2 {I|L}SS{M(Oxidation (M))|F}SD 6 10 18.058 0 0 1.4497 0 0 148.12266382632794 458.16770349674067 606.2903673230686 0 0 0 0 0 0 0 1 0 {I|L}SS{M(Oxidation (M))|F}SD 1.4497 - 82 + NaN NaN 130286.4 NaN 17212 4172 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21387 86.839 NaN 679450 35 0 78245 0.261 -1 YSLCSSQSSS 10 106 553.2245824965668 1104.4346120599334 2 553.2259521484375 MULTI HCD FTMS 0 0 0 21381 113828.7265625 0.44263332321692167 -1 0.01934814453125 6 Carbamidomethyl (C) _YSLC(Carbamidomethyl (C))SSQSSS_ ENSG00000145365|ENST00000361717|TIFA 10.799506525563784 0.4100970765206026 2 {I|L}{I|L}[MT] 4 -1 9.5695 0 0 0.86646 0 0 628.1712281261429 0 628.1712281261429 0 0.13128818850568358 0 0 0 0.9604093769761877 0 0 0 {I|L}{I|L}[MT] 0.86646 - 328 + NaN NaN 196060 NaN 17213 4172 21381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21389 86.844 NaN 2306100 35 0 478460 0.327 + 27254 SYPDLLPTF 9 61 526.7686321637001 1051.5227113942 2 526.7686157226562 MULTI HCD FTMS 0 0 0 21388 1436491.875 1 0 0 1 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 136.33342141710068 0.00022087650154924235 2 [TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}PT{M(Oxidation (M))|F} 9 5 + 74.459 0 0 7.0811 7.0811 91.93 0 0 0 5.465205067268286 44.49401151747452 5.465205067268286 12.25772496747986 0 1.805462187404089 1.3010299956639813 1.2302046884880937 0 [TP]{M(Oxidation (M))|F}{[ET]|[MV]}{I|L}PT{M(Oxidation (M))|F};[TP]{M(Oxidation (M))|F}{I|L}{[ET]|[MV]}PT{M(Oxidation (M))|F} 7.0811;5.9154 -;- 321 NaN NaN 444951.6 NaN 17214 4173 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21390 86.848 NaN 1446800 35 0 468900 0.261 + 6313 FPFQDIEL 8 61 504.75548378535154 1007.4964146375031 2 504.7550354003906 MULTI HCD FTMS 0 0 0 21388 1608317.625 0.7969651065860395 -4 0.0944061279296875 2 Unmodified _FPFQDIEL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 56.17704186161178 0.08952674942142515 2 QD{I|L}E{I|L} 5 3 54.157 0 0 5.3754 0 0 391.1900807111344 0 391.1900807111344 0 35.48455006504028 0 0 0 1.5044321917401078 0 0.805462187404089 0 + QD{I|L}E{I|L} 5.3754 + + 217 NaN NaN 306366.4 NaN 17215 4173 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21391 86.852 NaN 496220 35 0 99836 0.261 -1 PIILPMLLEI 10 73 584.3563254708603 1166.6980980085204 2 584.3563232421875 MULTI HCD FTMS 0 0 0 21388 269506.6875 0.42786123113815805 10 -0.2082061767578125 3 Oxidation (M) _PIILPM(Oxidation (M))LLEI_ tr|U7ST22|U7ST22_FUSNURibonucleaseJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnjPE=3SV=1 3.944395688203298 0.4544253912184634 2 PVW[SG]{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 32.049 0 0 2.747 0 0 112.22563814699545 0 112.22563814699545 0 2.8545753392086297 0 0 0 0 0 0.4247425010840047 0 PVW[SG]{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.747 - 373 + NaN NaN 166990.6 NaN 17216 4173 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21392 86.855 NaN 153720 35 0 15913 0.261 + -1 LSTCCYLCFT 10 51 634.2615973952308 1266.5086418572614 2 634.2622680664062 MULTI HCD FTMS 0 0 0 21388 53066.44140625 0.05565063425868636 10 -0.2082061767578125 4 2 Carbamidomethyl (C) _LSTC(Carbamidomethyl (C))C(Carbamidomethyl (C))YLCFT_ REV__chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4 3.5964929083625545 0.45626689593999237 2 {[QG]|[NA]}{M(Oxidation (M))|F}ED 5 -1 25.304 0 0 1.9979 0 0 0 687.2663668268186 687.2663668268186 5.839993556128107 0 0 0 0 0.8252574989159953 0 0.5 0 {[QG]|[NA]}{M(Oxidation (M))|F}ED 1.9979 - 19 + NaN NaN 106781.9 NaN 17217 4173 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21393 86.859 NaN 270990 35 0 35265 0.261 + 2459 DQSSNYDQSR 10 71 600.2514061051451 NaN 0 600.2523803710938 PEAK HCD FTMS 0 0 0 21388 68960.703125 0.5526091384846212 -2 0.04201507568359375 5 Unmodified _DQSSNYDQSR_ REV__SEMA4G|p.G386D|1|0.47|ENSG00000095539|chr10:100980150-100980150|G/A|missense_variant 3.5964929083625545 0.337106189561315 2 P 1 -1 5.4846 0 0 0.45762 0 0 61.01385908934419 1037.3816180015422 1098.3954770908863 0 0 0 0 0 0 0 0 0 P 0.45762 - 11 + NaN NaN 128944.4 NaN 17218 4173 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21394 86.862 NaN 436710 35 0 103300 0.261 + -1 MDSYEDVAF 9 63 546.7139012353865 1091.413249537573 2 547.2164916992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _M(Oxidation (M))DSYEDVAF_ REV__ENSG00000183856|ENST00000361170|IQGAP3 16.942295170755138 0.21397866736869717 2 VA{M(Oxidation (M))|F} 3 -1 38.188 0 0 3.4989 0 0 756.2285399201886 0 756.2285399201886 0 28.723637474483468 0 0 0 1.3494850021680094 0 0 0 VA{M(Oxidation (M))|F} 3.4989 + + 98 + NaN NaN 147494.3 NaN 17219 4173 21388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21396 86.867 NaN 2004100 35 0 259350 0.327 + 2784 DYFFKPVLF 9 101 588.3109478226573 1174.6073427121146 2 588.311279296875 MULTI HCD FTMS 0 0 0 21395 1481483.625 0.751366510643758 1 -0.02599334716796875 1 Unmodified _DYFFKPVLF_ ENST00000369452.8_1_10:112723943-112724024:+|nuORF 88.95385435242217 0.004553379958619559 2 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L}{M(Oxidation (M))|F} 9 0 + 89.324 0 0 7.6046 7.6046 95.044 0 0 0 29.771212547196626 16.478174818886373 16.478174818886373 29.771212547196626 0 2.805462187404089 2 1.0629529932484498 0.3807196863200844 + + {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K[VP]{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]D{M(Oxidation (M))|F}K[VP]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VG][VP]{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]S{M(Oxidation (M))|F}[VG][VP]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{[YD]|[{M(Oxidation (M))|F}M]}[VP]{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}K{[YD]|[{M(Oxidation (M))|F}M]}[VP]{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][EP]{M(Oxidation (M))|F}VVK{M(Oxidation (M))|F};{[WT]|[RM]}[HC]RVVK{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][EP]VV{M(Oxidation (M))|F}K{M(Oxidation (M))|F} 7.6046;5.07;3.6449;2.7366;2.5503;2.294;1.1308;1.0151;0.94198 +;-;-;-;-;-;-;-;- + 1488 NaN NaN 393278.5 NaN 17220 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21397 86.871 NaN 1249900 35 0 38792 0.261 -1 0 120 575.8429850378634 1149.6714171425267 2 575.84326171875 MULTI HCD FTMS 0 0 0 21395 1181982.125 0.5887259761023198 18 -0.40959930419921875 2 NaN NaN 2 D 1 -1 10.599 0 0 0.92191 0 0 61.052478682069314 970.5448718181849 1031.5973505002542 0 0 0 0 0 0.4247425010840047 0 0.3252574989159953 0 D 0.92191 - 333 + NaN NaN 279392.6 NaN 17221 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21398 86.875 NaN 982110 35 0 140640 0.261 + 22829 QYLPYISYL 9 90 580.3053092177329 1158.5960655022657 2 580.3057861328125 MULTI HCD FTMS 0 0 0 21395 584659.6875 0.26453103754149704 6 -0.11688232421875 3 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 81.89019881105858 0.005240739447516426 2 [YQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SY{I|L} 9 0 + 62.954 0 0 5.4337 5.4337 91.207 0 0 0 4.156330640369887 32.370893426047544 4.156330640369887 28.750612633916994 0 1.8494850021680094 0 1.305462187404089 0.7302046884880937 + + [YQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}Q{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[AG]{[QN]|[E{I|L}]|[KN]}{I|L}SY{I|L};[{I|L}P]V{[CP]|[EA]}DQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L} 5.4337;2.9522;2.1574;0.37386 +;-;-;- + 1289 NaN NaN 249922.2 NaN 17222 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21399 86.878 NaN 492020 35 0 31600 0.261 + 30569 VNLPPELRRQ 10 92 611.3562998667795 1220.698046800359 2 611.35595703125 MULTI HCD FTMS 0 0 0 21395 548535.1875 0.7228025711870801 -3 0.0646209716796875 4 Unmodified _VNLPPELRRQ_ ENSG00000240505|ENST00000261652|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;nc|ENSG00000240505|O14836-3|TNFRSF13B 4.715918219556657 0.45034159980724314 2 N{[HG]|PP}N 4 7 5.6741 0 0 0.46482 0 0 780.4415760724625 0 780.4415760724625 0 0.1895499814870769 0 0 0 0.4247425010840047 0 0 0 N{[HG]|PP}N 0.46482 - 27 NaN NaN 162808.1 NaN 17223 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21400 86.881 NaN 563830 35 0 27412 0.263 + 650 APLAARTRT 9 86 478.78589443056103 955.5572359279221 2 478.78509521484375 MULTI HCD FTMS 0 0 0 21395 414549.5625 0.7450014101891473 -1 0.02260589599609375 5 Unmodified _APLAARTRT_ REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF 10.823927491677226 0.26684000660059787 2 A 1 -1 7.3464 0 0 0.7688 0 0 105.07933929771964 776.427637348037 881.5069766457567 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.7688 + + 58 + NaN NaN 177802.1 NaN 17224 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21401 86.885 NaN 352630 35 0 52155 0.261 + 6267 FPFFADSSL 9 58 515.7467426582783 1029.4789323833566 2 515.74658203125 MULTI HCD FTMS 0 0 0 21395 113657.0078125 0.45382351561269757 -8 0.182098388671875 6 Unmodified _FPFFADSSL_ REV__tr|U7SU44|U7SU44_FUSNUBifunctionalpurinebiosynthesisproteinPurHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purHPE=3SV=1 21.74664581756881 0.17247014374749275 2 {I|L}M{M(Oxidation (M))|F}QD{I|L} 6 -1 65.399 0 0 6.3526 0 0 0 279.0961092584594 279.0961092584594 44.42979712652914 0 0 0 0 1.7302046884880937 1.6989700043360187 0.4247425010840047 0 {I|L}M{M(Oxidation (M))|F}QD{I|L} 6.3526 - 211 + NaN NaN 147021.1 NaN 17225 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21402 86.888 NaN 124480 35 0 17482 0.262 + 10211 IGNMGQTM 8 50 426.19148807904753 850.3684232248951 2 426.19140625 MULTI HCD FTMS 0 0 0 21395 79227.4765625 0.20237517182034576 9 -0.18560028076171875 7 Unmodified _IGNMGQTM_ APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB 2.577480529830294 0.5381683276125971 2 W 1 8 2.2185 0 0 0.26089 0 0 355.0865456387607 306.18232141666255 661.2688670554232 0 0 0 0 0 0 0 0 0 W 0.26089 - 16 + NaN NaN 109294.4 NaN 17226 4174 21395 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21404 86.893 NaN 3361200 35 0 731020 0.327 + 10692 IPVWDQEFL 9 94 573.7951373046228 1145.5757216760455 2 573.7952880859375 MULTI HCD FTMS 0 0 0 21403 3081004 0.8568072181395391 2 -0.035308837890625 1 Unmodified _IPVWDQEFL_ ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 96.36657018975838 0.004359138328518304 2 [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L} 9 0 + 94.65 0 0 8.2622 8.2622 93.376 0 0 0 10 15.580371765640422 10 10 0 2.2302046884880937 1.2218487496163564 0.6307196863200843 0.6989700043360187 + + [{I|L}P]VWDQE{M(Oxidation (M))|F}{I|L};[VP]{I|L}WDQE{M(Oxidation (M))|F}{I|L};{I|L}PVWDQE{I|L}{M(Oxidation (M))|F};[{I|L}P]VWDQE{I|L}{M(Oxidation (M))|F};[{I|L}P]VWD[AG]E{M(Oxidation (M))|F}{I|L};{I|L}PVWD[AG]E{I|L}{M(Oxidation (M))|F};[VP]{I|L}WDQE{I|L}{M(Oxidation (M))|F};[VP]{I|L}WD[AG]E{M(Oxidation (M))|F}{I|L};[{I|L}P]VWD[AG]E{I|L}{M(Oxidation (M))|F};[VP]{I|L}WD[AG]E{I|L}{M(Oxidation (M))|F} 8.2622;7.3893;7.0946;6.9022;6.8483;6.2908;6.0293;5.9754;5.7933;4.9204 +;-;-;-;-;-;-;-;-;- + 1399 NaN NaN 499292.7 NaN 17227 4175 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21405 86.897 NaN 1426800 35 0 354750 0.261 + 31422 VYASFALCMF 10 114 584.2637065001376 1166.512860067075 2 584.7860717773438 MULTI HCD FTMS 0 0 0 21403 115534.234375 0.5636724115705525 -3 0.07126617431640625 2 Oxidation (M) _VYASFALCM(Oxidation (M))F_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 88.90359156742426 0.0010865658313541904 2 PCC{I|L}A{M(Oxidation (M))|F}SAP{M(Oxidation (M))|F} 10 9 60.439 0 0 5.1812 0 0 112.0398186562614 0 112.0398186562614 0 38.38796197635234 0 0 0 2.9604093769761874 0 1.5044321917401078 0 PCC{I|L}A{M(Oxidation (M))|F}SAP{M(Oxidation (M))|F} 5.1812 - 1238 + NaN NaN 305246.3 NaN 17228 4175 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21406 86.901 NaN 312760 35 0 41583 0.261 + 6884 FPVAEDISLL 10 59 552.3029269478517 1102.5913009625033 2 552.3035888671875 MULTI HCD FTMS 0 0 0 21403 192775.796875 0.8997028300603754 -2 0.0485992431640625 3 Unmodified _FPVAEDISLL_ ENSG00000100325|ENST00000307790|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-2|ASCC2;nc|ENSG00000100325|Q9H1I8-3|ASCC2 30.636539890814138 0.2266618088935899 2 S{I|L}{I|L} 3 7 44.693 0 0 4.0534 0 0 771.3799277987632 0 771.3799277987632 0 20.250678166152127 0 0 0 1 0 0.8494850021680094 0 + S{I|L}{I|L} 4.0534 + + 229 NaN NaN 138061.3 NaN 17229 4175 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21407 86.904 NaN 233720 35 0 147480 0.261 -1 0 51 507.41571811352463 506.40844164692464 1 507.41558837890625 MULTI HCD FTMS 0 0 0 21403 108485.1640625 0.052629788222244026 10 -0.21936798095703125 4 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}V 3 -1 6.9627 0 0 1.3749 0 0 0 162.19137556709964 162.19137556709964 6.962724883926656 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}V 1.3749 - 5 NaN NaN 125207.6 NaN 17230 4175 21403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21409 86.909 NaN 1885100 35 0 72578 0.327 + 405 AKFRKQERA 9 117 567.3303563093277 1132.6461596854554 2 567.3302612304688 MULTI HCD FTMS 0 0 0 21408 2709148 0.6461635242251873 20 -0.45772552490234375 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 2 W 1 9 11.259 0 0 0.99405 0 0 928.5565275827195 0 928.5565275827195 0 1.0254361627226238 0 0 0 0 0 0 0 W 0.99405 - 433 + NaN NaN 374871.6 NaN 17231 4176 21408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21410 86.913 NaN 2913800 35 0 510360 0.261 + 18914 NAFEDSFSSIL 11 104 615.2881211953153 1228.5616894574305 2 615.2881469726562 MULTI HCD FTMS 0 0 0 21408 1535444.5 0.05470963083222004 11 -0.25264739990234375 2 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 165.58431159429136 1.6880998306939028E-08 2 {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 0 + 102.58 0 0 8.3498 8.3498 91.425 0 0 0 8.456837818197798 15.07062321345802 8.456837818197798 8.456837818197798 0 3.341129063296272 0 1.9581706663129559 0.566901560044258 + + {[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}{[C(Carbamidomethyl (C))E]|[WC]}SS{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}D{M(Oxidation (M))|F}SS{I|L}{I|L};{[TV]|[{I|L}S]}S[C(Carbamidomethyl (C))S]E{M(Oxidation (M))|F}SS{I|L}{I|L};{[WT]|[RM]}{[C(Carbamidomethyl (C))E]|[WC]}S{M(Oxidation (M))|F}SS{I|L}{I|L};[{M(Oxidation (M))|F}E]{[QG]|[NA]}DS{M(Oxidation (M))|F}SS{I|L}{I|L};[MD][KS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MG]|[TS]}DS{M(Oxidation (M))|F}SS{I|L}{I|L} 8.3498;7.6614;7.2642;6.9392;6.7591;6.5105;6.1263;6.0927;5.8476;5.7423 +;-;-;-;-;-;-;-;-;- + 5587 NaN NaN 539555.6 NaN 17232 4176 21408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21411 86.917 NaN 1087500 35 0 306390 0.261 + 5832 FPDASFQVVL 10 59 561.7952787985263 1121.5760046638525 2 561.7952270507812 MULTI HCD FTMS 0 0 0 21408 352292.5625 0.2619007085054385 -6 0.146087646484375 3 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 53.40400417844725 0.06540992187319636 2 S{M(Oxidation (M))|F}QVV{I|L} 6 4 73.563 0 0 6.5589 0 0 430.18696791816564 0 430.18696791816564 0 61.08857830256703 0 0 0 2.3807196863200843 0 0.3252574989159953 0.7742275032520141 + S{M(Oxidation (M))|F}QVV{I|L} 6.5589 + + 222 NaN NaN 252602.1 NaN 17233 4176 21408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21412 86.92 NaN 433710 35 0 20886 0.261 + 8218 GRLGRRERPV 10 99 598.3582180729068 NaN 0 598.3580322265625 PEAK HCD FTMS 0 0 0 21408 207791.109375 0.8642900835315123 -6 0.146087646484375 4 Unmodified _GRLGRRERPV_ ENST00000581067.1_1_18:5237286-5237328:-|nuORF 5.731851221503515 0.33527861879838866 2 Q{M(Oxidation (M))|F}{I|L} 3 9 9.2968 0 0 0.77817 0 0 388.25164937566916 415.1981295221313 803.4497788978005 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}{I|L} 0.77817 - 112 + NaN NaN 157840.5 NaN 17234 4176 21408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21413 86.923 NaN 736990 35 0 215530 0.261 + -1 MDSYEDVAF 9 66 546.7139012353865 1091.413249537573 2 546.712890625 MULTI HCD FTMS 0 0 0 21408 235816.609375 0.48703512626388284 -6 0.146087646484375 5 Oxidation (M) _M(Oxidation (M))DSYEDVAF_ REV__ENSG00000183856|ENST00000361170|IQGAP3 16.942295170755138 0.21397866736869717 2 {I|L}VA{M(Oxidation (M))|F} 4 -1 50.433 0 0 4.6209 0 0 643.1444569318375 0 643.1444569318375 0 45.828956512079344 0 0 0 1.8494850021680094 0 0 0 {I|L}VA{M(Oxidation (M))|F} 4.6209 - 36 NaN NaN 209576 NaN 17235 4176 21408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21415 86.928 NaN 1520000 35 0 153740 0.327 -1 0 106 531.2496457027006 1060.4847384722011 2 531.2499389648438 MULTI HCD FTMS 0 0 0 21414 1511051.875 1 0 0 1 NaN NaN 2 NA{M(Oxidation (M))|F}EE{I|L}V 7 -1 78.115 0 0 7.366 0 0 0 255.0749605768188 255.0749605768188 1.6516033102399064 0 0 0 0 2.309894379144197 1.5228787452803376 0.5866968715561641 0 NA{M(Oxidation (M))|F}EE{I|L}V 7.366 - 2391 + NaN NaN 333938.1 NaN 17236 4177 21414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21416 86.932 NaN 755400 35 0 42349 0.261 + 23792 RRPDVSLP 8 95 470.2722705827744 938.5299882323488 2 470.2721862792969 MULTI HCD FTMS 0 0 0 21414 826080.25 0.9326025833743048 -1 0.01935577392578125 2 Unmodified _RRPDVSLP_ REV__ENSG00000158321|ENST00000342771|AUTS2;REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2;REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2 8.593279151180031 0.5292430274356741 2 Q[{M(Oxidation (M))|F}V] 3 -1 11.809 0 0 1.2583 0 0 546.3241444318375 0 546.3241444318375 0 0.32969359948829613 0 0 0 0.5242275032520141 0 0 0 Q[{M(Oxidation (M))|F}V] 1.2583 - 51 NaN NaN 206862 NaN 17237 4177 21414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21417 86.936 NaN 317010 35 0 59286 0.261 + 1464 AYSTFPPEGVF 11 57 607.7901649923604 1213.5657770515206 2 607.7910766601562 MULTI HCD FTMS 0 0 0 21414 139341.765625 0.238946875013732 -8 0.178314208984375 3 Unmodified _AYSTFPPEGVF_ ENSG00000071967|ENST00000321348|CYBRD1;nc|ENSG00000071967|Q53TN4-3|CYBRD1 8.155526934196011 0.3831532958467648 2 WV{M(Oxidation (M))|F} 3 9 33.06 0 0 2.7242 0 0 763.3528919904312 0 763.3528919904312 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 WV{M(Oxidation (M))|F} 2.7242 - 20 NaN NaN 142345.1 NaN 17238 4177 21414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21418 86.939 NaN 672830 35 0 129730 0.261 + 4943 FAQEESYFG 9 98 539.2317905201292 1076.4490281070582 2 539.2333374023438 MULTI HCD FTMS 0 0 0 21414 186058.109375 0.7143458158432059 -5 0.10657501220703125 4 Unmodified _FAQEESYFG_ REV__ENST00000358149.7_2_5:176492462-176492681:+|nuORF 34.10243960390752 0.09241788333544565 2 {M(Oxidation (M))|F}ANE{[ET]|[MV]}YG{M(Oxidation (M))|F} 9 -1 + 39.526 0 0 3.6719 3.6719 82.674 0 0 0 17.307837616599663 0.513261132377508 0.513261132377508 4.8707683955049035 0 0.6248037067706361 0 1.064909327626439 0.4247425010840047 {M(Oxidation (M))|F}ANE{[ET]|[MV]}YG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}ENAE;{M(Oxidation (M))|F}AGGE{[ET]|[MV]}YG{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NM{[YD]|[{M(Oxidation (M))|F}M]}VA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}EGGAE;{M(Oxidation (M))|F}[WQ]{[ET]|[MV]}YG{M(Oxidation (M))|F};NA{M(Oxidation (M))|F}E{[ET]|[MV]}YG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{M(Oxidation (M))|F}{[CA]|SS}WTAE;{M(Oxidation (M))|F}[WQ]{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}[MT];[{M(Oxidation (M))|F}V]NC{[YD]|[{M(Oxidation (M))|F}M]}VA{M(Oxidation (M))|F} 3.6719;3.2194;2.4219;1.9797;1.9694;1.688;1.4722;1.3271;1.2355;1.071 -;-;-;-;-;-;-;-;-;- 396 + NaN NaN 209668.5 NaN 17239 4177 21414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21419 86.943 NaN 334230 35 0 49010 0.261 + 3706 ELVEEEPPFL 10 60 601.3037878180522 1200.5930227029044 2 601.8058471679688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ELVEEEPPFL_ ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF 25.399314129420986 0.2735354021946395 2 [YV]{I|L}[YT][WP]{I|L}{M(Oxidation (M))|F} 9 8 + 58.873 0 0 4.9036 4.9036 83.433 0 0 0 5.478240351121499 3.0102999566398125 3.0102999566398125 3.0102999566398125 0 1.4247425010840047 1.5228787452803376 0.3252574989159953 0 [YV]{I|L}[YT][WP]{I|L}{M(Oxidation (M))|F};[YV]{I|L}[YT][WP]{M(Oxidation (M))|F}{I|L};YV{I|L}{[DS]|[MA]|[CV]|TT}E{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F};[YV][YT]P{[DS]|[MA]|[CV]|TT}P{I|L}{M(Oxidation (M))|F};[YV][YT]{I|L}[WP]{I|L}{M(Oxidation (M))|F};[YV][YT]P{[DS]|[MA]|[CV]|TT}P{M(Oxidation (M))|F}{I|L};[YV][YT]{I|L}[WP]{M(Oxidation (M))|F}{I|L};[YV][YT]P{[DS]|[MA]|[CV]|TT}{I|L}P{M(Oxidation (M))|F};YV{I|L}{[DS]|[MA]|[CV]|TT}P[TP]Y{M(Oxidation (M))|F};YV{I|L}{[DS]|[MA]|[CV]|TT}P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F} 4.9036;4.6529;4.4473;4.2152;3.9857;3.9645;3.735;3.6107;3.4821;3.378 -;-;-;-;-;-;-;-;-;- 427 NaN NaN 142096 NaN 17240 4177 21414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21420 86.946 NaN 256380 35 0 34390 0.261 + 15322 LPARRSPGPR 10 79 553.8299528834482 1105.6453528336963 2 553.8295288085938 MULTI HCD FTMS 0 0 0 21414 116295.0625 0.8453367418399257 -5 0.10657501220703125 6 Unmodified _LPARRSPGPR_ ENST00000533387.5_1_11:134123508-134129738:+|nuORF 3.2813086475875832 0.45793521633868084 2 V 1 10 2.2185 0 0 0.20065 0 0 735.4252123081088 268.12384973697505 1003.5490620450839 0 0 0 0 0 0 0 0 0 V 0.20065 - 11 + NaN NaN 129885.3 NaN 17241 4177 21414 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21422 86.951 NaN 244740 35 0 19956 0.327 + 12554 KSRKRQEPPL 10 80 619.8695229941743 1237.7244930551485 2 619.8695068359375 MULTI HCD FTMS 0 0 0 21421 343898 0.8861245826840902 3 -0.05576324462890625 1 Unmodified _KSRKRQEPPL_ REV__ENSG00000143375|ENST00000271636|CGN;REV__nc|ENSG00000143375|Q9P2M7-2|CGN 5.296884461304476 0.4472664531305844 2 D 1 -1 10.841 0 0 0.8759 0 0 105.08142806654594 1014.5735038238515 1119.6549318903974 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 D 0.8759 - 83 + NaN NaN 121392.8 NaN 17242 4178 21421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21423 86.955 NaN 154610 35 0 27666 0.261 -1 PNCNCKYCSH 10 52 641.7424166617935 NaN 0 641.7405395507812 PEAK HCD FTMS 0 0 0 21421 26018.275390625 0.1150654396527354 1 -0.01087188720703125 2 2 Carbamidomethyl (C) _PNCNC(Carbamidomethyl (C))KYC(Carbamidomethyl (C))SH_ ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1 1.3295316138638542 0.339046394236575 2 {I|L} 1 -1 5.4846 0 0 0.42799 0 0 163.80739084136195 1001.5465792291624 1165.3539700705244 0 0 0 0 0 0 0 0 0 {I|L} 0.42799 - 2 + NaN NaN 122626.4 NaN 17243 4178 21421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21425 86.961 NaN 9211800 35 0 1675700 0.327 + 18921 NAFEELVAF 9 65 520.2584093062131 1038.5022656792262 2 520.258544921875 MULTI HCD FTMS 0 0 0 21424 6972497 0.7930493474244624 2 -0.044891357421875 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 174.72732175369546 1.2540765405420886E-09 2 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 115.61 0 0 11.133 11.133 96.929 0 0 0 16.148028923534525 16.478174818886373 16.148028923534525 16.148028923534525 0 3.2302046884880937 1.154901959985743 1.4049471895720984 1.610924374808178 + + {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}NEE{I|L}VA{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}GGEE{I|L}VA{M(Oxidation (M))|F};{[QG]|[NA]}{M(Oxidation (M))|F}E[{I|L}V]EA{M(Oxidation (M))|F} 11.133;9.5778;7.1399;6.1486 +;-;-;- + 493 NaN NaN 519202.7 NaN 17244 4179 21424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21426 86.965 NaN 979030 35 0 67425 0.261 -1 0 121 589.3429545551332 1176.6713561770664 2 589.3433227539062 MULTI HCD FTMS 0 0 0 21424 666932.75 0.429766731379824 30 -0.7288818359375 2 NaN NaN 2 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K 5 -1 33.997 0 0 2.8892 0 0 0 473.3271538667727 473.3271538667727 9.048246627886982 0 0 0 0 0 2 0 0.3054621874040891 {[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}K 2.8892 - 318 NaN NaN 242562.9 NaN 17245 4179 21424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21427 86.969 NaN 732090 35 0 180010 0.261 + 28419 TPFLYDLVM 9 64 557.7782863812777 1113.5420198293552 2 557.7781982421875 MULTI HCD FTMS 0 0 0 21424 307899.5 0.2472322578799639 18 -0.41832733154296875 3 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 71.13359017698441 0.008721403657255008 2 {I|L}YD{I|L}V{M(Oxidation (M))|F} 6 3 63.492 0 0 5.7018 0 0 345.1685047834 0 345.1685047834 0 48.007754241063054 0 0 0 2.1237125054200234 0 0.805462187404089 0 + {I|L}YD{I|L}V{M(Oxidation (M))|F} 5.7018 + + 266 NaN NaN 201566.3 NaN 17246 4179 21424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21428 86.972 NaN 824560 35 0 181520 0.261 + 31423 VYASFALCMF 10 107 584.2637065001376 1166.512860067075 2 584.264404296875 MULTI HCD FTMS 0 0 0 21424 186701.015625 0.7790338619183552 1 -0.022125244140625 4 Oxidation (M) _VYASFALCM(Oxidation (M))F_ ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 139.54400939418784 6.668095887891795E-07 2 [Y{I|L}]GS{M(Oxidation (M))|F}A{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 2 + 97.947 0 0 8.3966 8.3966 90.072 0 0 0 4.929155219028942 16.53212513775344 4.929155219028942 4.929155219028942 0 3.0356668758921828 1.5228787452803376 1.4559771852360797 0 [Y{I|L}]GS{M(Oxidation (M))|F}A{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]AS{M(Oxidation (M))|F}A{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][YQ]A{I|L}C{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GS{M(Oxidation (M))|F}{[WT]|[RM]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]AS{M(Oxidation (M))|F}{[WT]|[RM]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{[YC]|[HE]}A{M(Oxidation (M))|F}S[PA]{M(Oxidation (M))|F};[Y{I|L}]GS{M(Oxidation (M))|F}{[YC]|[HE]}AP{M(Oxidation (M))|F};[Y{I|L}][YC(Carbamidomethyl (C))]{M(Oxidation (M))|F}SAP{M(Oxidation (M))|F};[YN][HN]A{M(Oxidation (M))|F}SAP{M(Oxidation (M))|F};[Y{I|L}]G{[YC]|[HE]}{M(Oxidation (M))|F}SAP{M(Oxidation (M))|F} 8.3966;7.974;5.2534;4.9395;4.517;3.9381;3.5514;3.5283;3.388;3.3529 -;+;-;-;-;-;-;-;-;- + 1300 NaN NaN 212184.9 NaN 17247 4179 21424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21429 86.975 NaN 157470 35 0 16371 0.261 + -1 QGWSCLCDLL 10 52 626.2787674018078 1250.5429818704156 2 626.27978515625 MULTI HCD FTMS 0 0 0 21424 57959.1015625 0.015136733574277339 16 -0.36534881591796875 5 2 Carbamidomethyl (C) _QGWSC(Carbamidomethyl (C))LC(Carbamidomethyl (C))DLL_ REV__ENSG00000146918|ENST00000356309|NCAPG2;REV__ENST00000432615.5_1_7:158447451-158457424:-|nuORF;REV__ENST00000467785.5_1_7:158448006-158486027:-|nuORF;REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 8.745405648335112 0.42901288225909884 2 S{I|L}{I|L} 3 -1 30.177 0 0 2.4131 0 0 919.3204212873062 0 919.3204212873062 0 5.726825097560422 0 0 0 0 0 0.8494850021680094 0 S{I|L}{I|L} 2.4131 - 17 NaN NaN 106279.9 NaN 17248 4179 21424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21430 86.979 NaN 148210 35 0 48833 0.263 + 10468 IPDLDWEL 8 44 500.75283433184484 999.4911157304897 2 500.7521057128906 MULTI HCD FTMS 0 0 0 21424 122130.296875 0.640219732623203 2 -0.044891357421875 6 Unmodified _IPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 16.942295170755138 0.46913822049235215 2 WE{I|L} 3 5 31.555 0 0 3.1571 0 0 553.2739124982437 0 553.2739124982437 0 26.070006276765483 0 0 0 0.7742275032520141 0 0 0 + WE{I|L} 3.1571 + + 20 NaN NaN 118150.1 NaN 17249 4179 21424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21432 86.984 NaN 1745700 35 0 556590 0.327 + 6314 FPFQDIEL 8 70 504.75548378535154 1007.4964146375031 2 504.7553405761719 MULTI HCD FTMS 0 0 0 21431 1257785.875 0.6232670949755897 3 -0.06871795654296875 1 Unmodified _FPFQDIEL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 65.23502041540118 0.035195029005416045 2 QD{I|L}E{I|L} 5 3 62.563 0 0 6.2097 0 0 391.1899891584 0 391.1899891584 0 42.38560627359831 0 0 0 1.579689690656103 0 0.805462187404089 0.4247425010840047 + QD{I|L}E{I|L} 6.2097 + + 438 NaN NaN 374824.9 NaN 17250 4180 21431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21433 86.988 NaN 839650 35 0 170080 0.261 + 27255 SYPDLLPTF 9 58 526.7686321637001 1051.5227113942 2 526.7684326171875 MULTI HCD FTMS 0 0 0 21431 413451.21875 0.28782008860996866 7 -0.17771148681640625 2 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 81.61307344734483 0.005330412723537057 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP]PT{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}C]|[YS]} + + 53.989 3.7236 1.4889 5.1344 5.1344 62.516 0 0 0 0 33.86577933228914 0 0 0 1.4247425010840047 0 1.7302046884880937 0 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}[DP]PT{M(Oxidation (M))|F} 5.1344 - 186 + NaN NaN 218977.3 NaN 17251 4180 21431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21434 86.992 NaN 310390 35 0 18561 0.261 + 34555 YPLDLLLKL 9 68 544.3417497027643 1086.6689464723286 2 544.3416137695312 MULTI HCD FTMS 0 0 0 21431 103951.3359375 0.20854922661481257 -2 0.03299713134765625 3 Unmodified _YPLDLLLKL_ ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4 61.60191391372663 0.015340508911304802 2 YP{I|L}D{I|L}{I|L}{I|L}K{I|L} 9 0 + 69.879 0 0 6.4306 6.4306 87.921 0 0 0 22.079569145996345 8.010299956639813 8.010299956639813 8.010299956639813 0 1.860924374808178 1.5228787452803376 0 0 + + YP{I|L}D{I|L}{I|L}{I|L}K{I|L};YP{I|L}D{I|L}{I|L}K{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{I|L}{I|L}{I|L}K{I|L};[{I|L}P]DY{I|L}{I|L}{I|L}K{I|L} 6.4306;5.6934;4.3987;3.438 +;-;+;- + 361 + NaN NaN 137566.8 NaN 17252 4180 21431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21435 86.995 NaN 245590 35 0 14047 0.261 + 30779 VPRGMSLLWP 10 73 578.3207524131933 1154.6269518931865 2 578.3203125 MULTI HCD FTMS 0 0 0 21431 163333.859375 0.4492067029445748 17 -0.39620208740234375 4 Unmodified _VPRGMSLLWP_ REV__ENST00000325147.13_1_11:204707-204863:-|nuORF 3.5964929083625545 0.45626689593999237 2 Q 1 -1 5.4846 0 0 0.47501 0 0 502.30262435588025 521.2567843072874 1023.5594086631677 0 0 0 0 0 0 0 0 0 Q 0.47501 - 39 + NaN NaN 131919.2 NaN 17253 4180 21431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21436 86.998 NaN 216690 35 0 20702 0.261 + -1 QGWSCLCDLL 10 53 626.2787674018078 1250.5429818704156 2 626.7801513671875 MULTI HCD FTMS 0 0 0 21431 55176.80078125 0.022367143113323634 17 -0.39620208740234375 5 2 Carbamidomethyl (C) _QGWSC(Carbamidomethyl (C))LC(Carbamidomethyl (C))DLL_ REV__ENSG00000146918|ENST00000356309|NCAPG2;REV__ENST00000432615.5_1_7:158447451-158457424:-|nuORF;REV__ENST00000467785.5_1_7:158448006-158486027:-|nuORF;REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 13.042465956692817 0.38911719078024076 2 E[NS]{I|L} 4 -1 26.7 0 0 2.135 0 0 789.3511554661136 0 789.3511554661136 0 18.984236336163374 0 0 0 0.6694451763165201 0 0.3807196863200844 0 E[NS]{I|L} 2.135 - 29 NaN NaN 124168.8 NaN 17254 4180 21431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21437 87.002 NaN 429550 35 0 106550 0.264 + 351 AGWRAWGA 8 53 437.71913581703814 873.4237187008763 2 437.71923828125 MULTI HCD FTMS 0 0 0 21431 118261.0234375 1 0 0 6 Unmodified _AGWRAWGA_ ENST00000438060.5_2_19:38709694-38714578:-|nuORF 24.67388899826682 0.4122521268485776 2 AN{M(Oxidation (M))|F} 3 7 47.747 0 0 5.4667 0 0 0 538.2520235650999 538.2520235650999 40.713337517843655 0 0 0 0 0.7302046884880937 1.3010299956639813 0 0.4247425010840047 AN{M(Oxidation (M))|F} 5.4667 - 44 + NaN NaN 155044.1 NaN 17255 4180 21431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21439 87.006 NaN 1213200 35 0 39154 0.327 -1 0 112 575.8429850378634 1149.6714171425267 2 575.843017578125 MULTI HCD FTMS 0 0 0 21438 1285283 0.640178453411652 25 -0.5983352661132812 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.0628 0 0 984.5924661921346 0 984.5924661921346 0 3.1947654920421087 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0628 - 316 + NaN NaN 267776.5 NaN 17256 4181 21438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21440 87.011 NaN 296900 35 0 36397 0.261 + 22830 QYLPYISYL 9 59 580.3053092177329 1158.5960655022657 2 580.3052978515625 MULTI HCD FTMS 0 0 0 21438 128448.0546875 0.05811670943478778 13 -0.3128662109375 2 Unmodified _QYLPYISYL_ ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81 39.94969957227396 0.06557568441294001 2 {I|L}SY{I|L} 4 5 47.467 0 0 4.0969 0 0 664.3211525079871 0 664.3211525079871 0 23.52227747697718 0 0 0 1.274227503252014 0 0.8807196863200843 0 + {I|L}SY{I|L} 4.0969 + + 439 NaN NaN 136224.2 NaN 17257 4181 21438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21441 87.014 NaN 405940 35 0 42644 0.261 + 19692 NWTTAAPLLL 10 63 550.3109668357602 1098.6073807383202 2 550.3113403320312 MULTI HCD FTMS 0 0 0 21438 115606.4609375 0.8364101961187734 1 -0.02272796630859375 3 Unmodified _NWTTAAPLLL_ ENSG00000134324|ENST00000674199|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693|LPIN1 32.78568957990786 0.20801173326193015 2 A[{I|L}P]{I|L}{I|L} 5 5 30.942 0 0 2.8165 0 0 573.2539946522645 0 573.2539946522645 0 14.744237387763093 0 0 0 1.5 0 0 0 + A[{I|L}P]{I|L}{I|L} 2.8165 + + 88 NaN NaN 142465.8 NaN 17258 4181 21438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21442 87.018 NaN 466040 35 0 116300 0.261 + -1 QEALAQQLRM 10 66 602.3126752111835 NaN 0 602.3318481445312 PEAK HCD FTMS 0 0 0 21438 15974.0869140625 0.1339763310023081 3 -0.0758514404296875 4 Oxidation (M) _QEALAQQLRM(Oxidation (M))_ REV__ENSG00000108590|ENST00000225728|MED31 26.268140514670165 0.2298602997689256 2 Y{M(Oxidation (M))|F}{I|L} 3 -1 10.177 0 0 0.84627 0 0 165.03880357999884 611.3288668268186 776.3676704068175 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}{I|L} 0.84627 - 198 + NaN NaN 173097.8 NaN 17259 4181 21438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21443 87.021 NaN 158610 35 0 40943 0.262 + 4942 FAPPVQESF 9 43 511.2513427734375 NaN 0 511.2513427734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FAPPVQESF_ ENSG00000081923|ENST00000648908|ATP8B1 25.399314129420986 0.1511568710901456 2 A 1 8 13.737 0 0 1.3461 0 0 784.3722308820329 162.05576502017814 946.427995902211 0 0 0 0 0 0.8252574989159953 0 0 0 + A 1.3461 + + 32 + NaN NaN 133106.9 NaN 17260 4181 21438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21444 87.024 NaN 88304 35 0 11588 0.261 -1 GYGRKGYAVCL 11 51 622.3173601548167 NaN 0 622.3472290039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _GYGRKGYAVC(Carbamidomethyl (C))L_ ENST00000395850.7_1_11:33730260-33730368:-|nuORF 13.042465956692817 0.3051224235824938 2 G{I|L} 2 -1 20.217 0 0 1.6269 0 0 220.07162746925172 849.4091193088585 1069.4807467781102 0 0 0 0 0 0.9247425010840047 0 0 0 G{I|L} 1.6269 - 17 + NaN NaN 128120.2 NaN 17261 4181 21438 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21446 87.029 NaN 563900 35 0 28537 0.327 + 30939 VRKYTRITGQ 10 89 611.3562998667795 1220.698046800359 2 611.356201171875 MULTI HCD FTMS 0 0 0 21445 558260.375 0.7356174109466105 5 -0.1322174072265625 1 Unmodified _VRKYTRITGQ_ REV__chr1:86444547-86447508|145|38.97|0.26|7.25|+|1|TE_info:L2c,L2c_dup6838,L2,LINE,donor,-,86444430,86444547|None,CLCA2|2 3.5870582119611467 0.4563168352879256 2 {[HG]|PP}N 3 -1 8.4286 0 0 0.69048 0 0 0 909.4911595375168 909.4911595375168 0.20181229336984252 0 0 0 0 0.4247425010840047 0 0 0 {[HG]|PP}N 0.69048 - 51 + NaN NaN 185521.6 NaN 17262 4182 21445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21447 87.034 NaN 1149400 35 0 117400 0.261 + 16971 LYIENQFFI 9 88 593.8107380759712 1185.6069232187424 2 593.810791015625 MULTI HCD FTMS 0 0 0 21445 748130.125 0.3807559439190098 -5 0.10107421875 2 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 118.89474601620944 0.0014903111061077812 2 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 99.892 0 0 8.4254 8.4254 91.707 0 0 0 18.741436528314566 86.70486885197654 18.741436528314566 9.018637558036673 0 2.3494850021680094 1.3979400086720375 0.2302046884880938 1.5044321917401078 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}NQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}N[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]E{I|L}GG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.4254;7.6648;7.6488;7.4546;6.8881;6.6939;5.6069;4.8462 +;-;-;-;-;-;-;- + 1013 NaN NaN 264268.5 NaN 17263 4182 21445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21448 87.038 NaN 381330 35 0 18302 0.263 + 651 APLAARTRT 9 78 478.78589443056103 955.5572359279221 2 478.7855529785156 MULTI HCD FTMS 0 0 0 21445 368443.625 0.6621428293033149 7 -0.1645355224609375 3 Unmodified _APLAARTRT_ REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF 10.823927491677226 0.26684000660059787 2 A 1 -1 7.4743 0 0 0.78219 0 0 105.08019031810893 776.426618438954 881.506808757063 0 0 0 0 0 0.5 0 0 0 A 0.78219 + + 18 + NaN NaN 163377.5 NaN 17264 4182 21445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21449 87.041 NaN 1052900 35 0 218240 0.261 -1 0 109 584.3563254708603 1166.6980980085204 2 584.3566284179688 MULTI HCD FTMS 0 0 0 21445 402015.4375 0.6382283928494176 19 -0.45824432373046875 4 NaN NaN 2 [Y{I|L}]GS{M(Oxidation (M))|F}A{I|L}CCP 10 -1 49.977 0 0 4.2836 0 0 0 109.20869306150794 109.20869306150794 11.663865622122671 0 0 0 0 0 2 1.3169015600442577 0 [Y{I|L}]GS{M(Oxidation (M))|F}A{I|L}CCP 4.2836 - 4724 NaN NaN 270540.8 NaN 17265 4182 21445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21450 87.044 NaN 509460 35 0 87634 0.261 + 4944 FAQEESYFG 9 78 539.2317905201292 1076.4490281070582 2 539.2314453125 MULTI HCD FTMS 0 0 0 21445 260459.4375 1 0 0 5 Unmodified _FAQEESYFG_ REV__ENST00000358149.7_2_5:176492462-176492681:+|nuORF 21.74664581756881 0.17247014374749275 2 ENAE 4 -1 39.302 0 0 3.6511 0 0 615.2584095685562 0 615.2584095685562 0 17.134928107446186 0 0 0 0.7302046884880937 0 0.8807196863200843 0.3807196863200844 ENAE 3.6511 - 298 NaN NaN 183838 NaN 17266 4182 21445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21451 87.048 NaN 364550 35 0 86720 0.261 + -1 YVLFSVCLIM 10 59 602.3126752111835 NaN 0 602.3317260742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _YVLFSVCLIM(Oxidation (M))_ REV__ENSG00000086717|ENST00000470157|PPEF1;REV__nc|ENSG00000086717|O14829-2|PPEF1;REV__nc|ENSG00000086717|O14829-3|PPEF1;REV__nc|ENSG00000086717|O14829-4|PPEF1;REV__nc|ENSG00000086717|O14829-5|PPEF1 11.640296217721598 0.3302218087712401 2 Y{M(Oxidation (M))|F} 2 -1 7.0783 0 0 0.58858 0 0 165.04153790907554 724.4134615533811 889.4549994624567 0 0 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F} 0.58858 - 165 + NaN NaN 164436.1 NaN 17267 4182 21445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21453 87.052 NaN 1991000 35 0 72857 0.327 + 406 AKFRKQERA 9 118 567.3303563093277 1132.6461596854554 2 567.3303833007812 MULTI HCD FTMS 0 0 0 21452 2712753.5 0.6470234781983899 27 -0.6777496337890625 1 Unmodified _AKFRKQERA_ ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000165462|ENST00000298231|PHOX2A 10.073929032068715 0.27331982688540024 2 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 7 8 16.986 0 0 1.4997 0 0 286.14171226599825 0 286.14171226599825 0 0.05227275516950414 0 0 0 1.0994850021680094 0 0.7302046884880937 0 K{[ES]|[DT]|[{I|L}C]}HT[{M(Oxidation (M))|F}V] 1.4997 - 493 NaN NaN 370375.2 NaN 17268 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21454 87.057 NaN 949720 35 0 278680 0.261 + 5833 FPDASFQVVL 10 64 561.7952787985263 1121.5760046638525 2 561.7953491210938 MULTI HCD FTMS 0 0 0 21452 701388.75 0.5214251736090622 1 -0.02989959716796875 2 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 45.739877483867886 0.09559676962230333 2 S{M(Oxidation (M))|F}QVV{I|L} 6 4 70.623 0 0 6.2967 0 0 430.1827870099625 0 430.1827870099625 0 65.13805019828801 0 0 0 2.3807196863200843 0 0.4247425010840047 0.3807196863200844 + S{M(Oxidation (M))|F}QVV{I|L} 6.2967 + + 134 NaN NaN 240620.1 NaN 17269 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21455 87.061 NaN 1478700 35 0 194690 0.261 + 18915 NAFEDSFSSIL 11 81 615.2881211953153 1228.5616894574305 2 615.2877807617188 MULTI HCD FTMS 0 0 0 21452 476381.21875 0.01697400369288213 18 -0.43502044677734375 3 Unmodified _NAFEDSFSSIL_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 105.34515851771125 0.020869630190104193 2 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L} 11 3 + 97.401 0 0 7.9281 7.9281 94.985 0 0 0 26.089997858903658 52.999814317048475 26.089997858903658 21.735162698957282 0 2.6619543704721593 1.6989700043360187 1.3807196863200843 1.0044321917401078 [YN][PS]DS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN]A{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MS]|[{M(Oxidation (M))|F}A]}SS{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[C(Carbamidomethyl (C))R]S{M(Oxidation (M))|F}SS{I|L}{I|L};{[QG]|[NA]}{M(Oxidation (M))|F}EDS{M(Oxidation (M))|F}SS{I|L}{I|L};[YN]AWV[{M(Oxidation (M))|F}V][DC]{I|L};[R{M(Oxidation (M))|F}]{[WS]|[C(Carbamidomethyl (C)){I|L}]}S{M(Oxidation (M))|F}SS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}AWTACSS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}A[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}AW[KC]MS{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[WK]DCSS{I|L}{I|L} 7.9281;6.1589;5.0864;4.4063;3.6195;2.1675;2.0059;1.5846;1.2454;0.92827 -;-;-;+;-;-;-;-;-;- + 1002 NaN NaN 315705.6 NaN 17270 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21456 87.064 NaN 624370 35 0 55755 0.261 -1 VTCRGLLEY 9 79 555.7824058169261 NaN 0 555.7952880859375 PEAK HCD FTMS 0 0 0 21452 14888.103515625 0.7022911615176555 -2 0.04595184326171875 4 Carbamidomethyl (C) _VTC(Carbamidomethyl (C))RGLLEY_ ENSG00000184743|ENST00000398868|ATL3 22.736283301280096 0.1690317064107932 2 {M(Oxidation (M))|F}Q{I|L}NVD 6 -1 41.041 0 0 3.6989 0 0 148.09710810630264 242.11420618228752 390.2113142885902 0 0 0 0 0 0 0 1.416386562212267 0.28872548999643577 {M(Oxidation (M))|F}Q{I|L}NVD 3.6989 - 379 + NaN NaN 184203.7 NaN 17271 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21457 87.067 NaN 451920 35 0 81704 0.261 -1 0 93 597.8564615606568 1193.6983701881136 2 597.856201171875 MULTI HCD FTMS 0 0 0 21452 257411.734375 0.31685231834636235 34 -0.869476318359375 5 NaN NaN 2 D 1 -1 6.5714 0 0 0.55051 0 0 61.05105472374823 1014.5743502252561 1075.6254049490044 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.55051 - 70 + NaN NaN 183940.2 NaN 17272 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21458 87.071 NaN 183950 35 0 24593 0.261 + 6885 FPVAEDISLL 10 56 552.3029269478517 1102.5913009625033 2 552.3032836914062 MULTI HCD FTMS 0 0 0 21452 58621.390625 0.27359156025995424 6 -0.1413116455078125 6 Unmodified _FPVAEDISLL_ ENSG00000100325|ENST00000307790|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-2|ASCC2;nc|ENSG00000100325|Q9H1I8-3|ASCC2 24.020572477871973 0.2864316864133941 2 S{I|L}{I|L} 3 7 39.693 0 0 3.6 0 0 771.3800601034775 0 771.3800601034775 0 19.564315807742002 0 0 0 0.5 0 0.8494850021680094 0 + S{I|L}{I|L} 3.6 + + 165 NaN NaN 128374.8 NaN 17273 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21459 87.074 NaN 220210 35 0 27768 0.261 + 13725 KYPLNLYLLF 10 54 642.3736588577037 1282.7327647822074 2 642.3734130859375 MULTI HCD FTMS 0 0 0 21452 32651.46875 0.2190890578556344 1 -0.02989959716796875 7 Unmodified _KYPLNLYLLF_ ENSG00000155957|ENST00000358230|TMBIM4 39.94969957227396 0.1458432724694501 2 N{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F} 6 4 52.568 0 0 4.0981 0 0 501.2950611798844 0 501.2950611798844 0 42.110403483680656 0 0 0 1 0 0 0.3807196863200844 + N{I|L}Y{I|L}{I|L}{M(Oxidation (M))|F} 4.0981 + + 51 NaN NaN 137217.2 NaN 17274 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21460 87.077 NaN 79507 35 0 11487 0.264 + 30320 VKVRFKFFYLL 11 38 487.29898606070594 NaN 0 487.2991943359375 PEAK HCD FTMS 0 0 0 21452 8573.5029296875 0.11191060507544476 2 -0.05976104736328125 8 Unmodified _VKVRFKFFYLL_ APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF 0 0.34212014346876374 2 K 1 10 3.0989 0 0 0.31863 0 0 485.7391331548119 355.7218416803344 841.4609748351463 0 0 0 0 0 0 0 0 0 + K 0.31863 + + 6 + NaN NaN 113451.6 NaN 17275 4183 21452 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21462 87.082 NaN 4255700 35 0 774730 0.327 + 17365 LYQFNPAFF 9 105 573.7843574036401 1145.5541618740801 2 573.78466796875 MULTI HCD FTMS 0 0 0 21461 3114580 0.85713894534163 -3 0.0758514404296875 1 Unmodified _LYQFNPAFF_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 112.59319219568356 0.00251905749371435 2 [Y{I|L}]Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 103 0 0 8.991 8.991 92.724 0 0 0 19.366130211356065 58.6869088830413 19.366130211356065 9.208187539523735 0 3.120371515030528 1.5228787452803376 0 1.274227503252014 + + [Y{I|L}]Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}NP{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}GGP{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}NP{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}[PA]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]AA{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.991;8.1872;8.1872;7.5736;7.1172;6.7698;6.7698;6.4069;6.3133;6.3133 +;-;-;-;-;-;-;-;-;- + 8840 NaN NaN 757563.2 NaN 17276 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21463 87.087 NaN 808760 35 0 84877 0.261 -1 0 92 531.2496457027006 1060.4847384722011 2 531.25 MULTI HCD FTMS 0 0 0 21461 520072.625 0.3441791996717518 7 -0.15436553955078125 2 NaN NaN 2 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}V 7 -1 70.243 0 0 6.6237 0 0 0 255.0747164361938 255.0747164361938 11.487643218550602 0 0 0 0 2.4916440611282624 1.5228787452803376 0.28872548999643577 0 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}V 6.6237 - 1792 + NaN NaN 218024.2 NaN 17277 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21464 87.091 NaN 264990 35 0 14692 0.261 + 12432 KPTNPRNI 8 70 470.2722705827744 938.5299882323488 2 470.27215576171875 MULTI HCD FTMS 0 0 0 21461 233703.03125 0.2638388348906246 6 -0.1409149169921875 3 Unmodified _KPTNPRNI_ REV__ENSG00000083312|ENST00000337273|TNPO1;REV__ENSG00000105576|ENST00000425528|TNPO2;REV__ENST00000436471.2_1_17:20384856-20385102:-|nuORF;REV__ENST00000587155.1_1_19:12812547-12813748:-|nuORF;REV__nc|ENSG00000083312|Q92973-2|TNPO1;REV__nc|ENSG00000083312|Q92973-3|TNPO1;REV__nc|ENSG00000105576|O14787-2|TNPO2 4.75600775471527 0.5349361699807423 2 Q[{M(Oxidation (M))|F}V] 3 -1 11.954 0 0 1.2737 0 0 546.3235951154312 0 546.3235951154312 0 6.112854729690779 0 0 0 0.5387254899964358 0 0 0 Q[{M(Oxidation (M))|F}V] 1.2737 - 23 NaN NaN 140966.6 NaN 17278 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21465 87.094 NaN 573110 35 0 176790 0.261 + 5969 FPDQLYDAVF 10 51 607.7901649923604 1213.5657770515206 2 607.7901000976562 MULTI HCD FTMS 0 0 0 21461 453176.875 0.7771194632423307 -1 0.02989959716796875 4 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 23.789781309258295 0.28859042913526417 2 DAV{M(Oxidation (M))|F} 4 6 51.186 0 0 4.2178 0 0 763.3539615392476 0 763.3539615392476 0 45.70107520596089 0 0 0 1.5 0 0.4247425010840047 0 + DAV{M(Oxidation (M))|F} 4.2178 + + 56 NaN NaN 179291.5 NaN 17279 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21466 87.097 NaN 1350100 35 0 157300 0.261 + 17396 LYQLHSTCF 9 101 584.7759836082182 1167.5374142832363 2 584.7765502929688 MULTI HCD FTMS 0 0 0 21461 383227.125 0.7910150701751716 -3 0.0758514404296875 5 Carbamidomethyl (C) _LYQLHSTC(Carbamidomethyl (C))F_ REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense 52.268347100219714 0.028397529699942435 2 {I|L}YQ{M(Oxidation (M))|F}N 5 -1 82.053 0 0 7.0278 0 0 0 499.19580708866494 499.19580708866494 32.85367773255025 0 0 0 0 1.5994850021680094 2 0 1.110924374808178 {I|L}YQ{M(Oxidation (M))|F}N 7.0278 - 4356 + NaN NaN 312271 NaN 17280 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21467 87.101 NaN 806380 35 0 99097 0.261 + -1 MDSYEDVAF 9 73 546.7139012353865 1091.413249537573 2 546.7138671875 MULTI HCD FTMS 0 0 0 21461 202115.96875 0.41743275259956764 2 -0.05594635009765625 6 Oxidation (M) _M(Oxidation (M))DSYEDVAF_ REV__ENSG00000183856|ENST00000361170|IQGAP3 11.640296217721598 0.25978676193971967 2 {I|L}VA{M(Oxidation (M))|F} 4 -1 23.933 0 0 2.1928 0 0 643.1483021466812 0 643.1483021466812 0 -0.6863623584101219 -0.6863623584101219 0 0 0.7302046884880937 0 0 0 {I|L}VA{M(Oxidation (M))|F} 2.1928 - 241 NaN NaN 213351.6 NaN 17281 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21468 87.104 NaN 867320 35 0 393870 0.261 + 33906 YLPPLFWRF 9 81 619.8399157076639 1237.6652784821276 2 619.83984375 MULTI HCD FTMS 0 0 0 21461 310371.15625 0.5840832061883947 -3 0.0758514404296875 7 Unmodified _YLPPLFWRF_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 32.30548876998284 0.10066689432505688 2 [Y{I|L}]P[{I|L}P]{M(Oxidation (M))|F}WR{M(Oxidation (M))|F} 9 0 + 36.347 0 0 2.9367 2.9367 88.771 0 0 0 21.15619957589964 3.8996998762537842 3.8996998762537842 36.34697482522072 0 1.0994850021680094 1.6989700043360187 0 0 + + [Y{I|L}]P[{I|L}P]{M(Oxidation (M))|F}WR{M(Oxidation (M))|F} 2.9367 + + 135 + NaN NaN 224835.4 NaN 17282 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21469 87.107 NaN 302430 35 0 49232 0.261 + 16925 LYGQGEIPQGF 11 63 604.8013719332455 1207.588190933291 2 604.802490234375 MULTI HCD FTMS 0 0 0 21461 160627.375 0.7337306554558848 -3 0.0758514404296875 8 Unmodified _LYGQGEIPQGF_ ENSG00000203668|ENST00000366553|CHML 19.361941925380144 0.2883811769592959 2 {I|L}Y{I|L}EC 5 8 58.43 0 0 4.8386 0 0 0 583.2998140924436 583.2998140924436 39.71848749616356 0 0 0 0 0.8252574989159953 1.6989700043360187 0.5 0 {I|L}Y{I|L}EC 4.8386 - 115 + NaN NaN 136644.9 NaN 17283 4184 21461 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21471 87.112 NaN 3493200 35 0 615070 0.327 + 18922 NAFEELVAF 9 85 520.2584093062131 1038.5022656792262 2 520.2586059570312 MULTI HCD FTMS 0 0 0 21470 2433657.5 0.2768033449465304 8 -0.17742919921875 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 155.02607137521346 3.513045939247001E-06 2 {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 101 0 0 9.7257 9.7257 91.452 0 0 0 5.017346757967545 5.017346757967545 5.017346757967545 5.017346757967545 0 3.2302046884880937 0 1.3851518780601921 1.579689690656103 + + {[QG]|[NA]}{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};NA{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[QG]|[NA]}E{I|L}VA{M(Oxidation (M))|F};{M(Oxidation (M))|F}{[QG]|[NA]}EE{I|L}VA{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[MG]|[TS]}E{I|L}VA{M(Oxidation (M))|F};{[VA]|[{I|L}G]}EE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VA{M(Oxidation (M))|F};NA{M(Oxidation (M))|F}E[{I|L}V]EA{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[WM]{I|L}VA{M(Oxidation (M))|F};{[VA]|[{I|L}G]}C[WM]{I|L}VA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][KP]{[DS]|[MA]|[CV]|TT}VA{M(Oxidation (M))|F} 9.7257;9.2426;7.7607;7.5041;6.2794;6.0895;6.0147;5.7061;5.6487;4.6036 +;+;-;-;-;-;-;-;-;- + 513 NaN NaN 485366.1 NaN 17284 4185 21470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21472 87.117 NaN 897050 35 0 58763 0.261 -1 0 130 589.3429545551332 1176.6713561770664 2 589.3429565429688 MULTI HCD FTMS 0 0 0 21470 391358.375 0.2521885596739243 36 -0.9265975952148438 2 NaN NaN 2 EQVNSVQQN 9 -1 29.012 0 0 2.4656 0 0 132.1756286933017 0 132.1756286933017 0 9.125328643311708 0 0 0 0.309894379144197 0 0.9291746928241125 0.3054621874040891 EQVNSVQQN 2.4656 - 1398 + NaN NaN 236294.6 NaN 17285 4185 21470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21473 87.12 NaN 648930 35 0 199690 0.261 + -1 YYSAMMASPF 10 63 600.2401897787323 1198.4658266242645 2 600.2402954101562 MULTI HCD FTMS 0 0 0 21470 175396.703125 0.6671338521879925 -2 0.05976104736328125 3 2 Oxidation (M) _YYSAM(Oxidation (M))M(Oxidation (M))ASPF_ REV__ENSG00000187049|ENST00000515837|TMEM216;REV__nc|ENSG00000187049|Q9P0N5-2|TMEM216;REV__nc|ENSG00000187049|Q9P0N5-3|TMEM216 3.944395688203298 0.4544253912184634 2 YY{I|L} 3 -1 25.062 0 0 2.0911 0 0 0 756.2319148413145 756.2319148413145 18.071968632008435 0 0 0 0 0 2 0 0 YY{I|L} 2.0911 - 47 NaN NaN 193009.6 NaN 17286 4185 21470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21474 87.124 NaN 277330 35 0 55554 0.261 -1 NMMFDCNLI 9 61 558.7281841838625 1115.4418154345249 2 558.7285766601562 MULTI HCD FTMS 0 0 0 21470 33616.94921875 0.1824790654359385 11 -0.25431060791015625 4 Oxidation (M) _NM(Oxidation (M))MFDCNLI_ ENST00000282541.9_1_3:32207403-32207541:+|nuORF 7.289230182591677 0.29575926068275815 2 V{I|L}{I|L}M{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 8 -1 42.727 0 0 3.8305 0 0 166.9464673894061 0 166.9464673894061 0 27.621155736184022 0 0 0 0 0 0.3252574989159953 0.7614393726401688 V{I|L}{I|L}M{NN|[MP]|[D{I|L}]|[EV]}V{M(Oxidation (M))|F} 3.8305 - 185 + NaN NaN 134990 NaN 17287 4185 21470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21475 87.133 NaN 141230 35 0 11533 0.261 + 12814 KYEFCCVCLY 10 61 635.7685360165226 1269.522519099845 2 635.7689819335938 MULTI HCD FTMS 0 0 0 21470 39840.109375 0.5995059149601916 3 -0.07207489013671875 5 Unmodified _KYEFCCVCLY_ REV__DOCK7|p.S1368C|1|0.22|ENSG00000116641|chr1:62513732-62513732|G/C|missense_variant 13.90604991867851 0.3810395177745597 2 [YV]AS{M(Oxidation (M))|F} 5 -1 56.343 0 0 4.4381 0 0 0 699.2328211840826 699.2328211840826 31.87916549520928 0 0 0 0 1.8494850021680094 1.6989700043360187 0.8807196863200843 0 [YV]AS{M(Oxidation (M))|F} 4.4381 - 74 NaN NaN 127928.1 NaN 17288 4185 21470 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21477 87.138 NaN 909570 35 0 228280 0.327 + 6315 FPFQDIEL 8 63 504.75548378535154 1007.4964146375031 2 504.75555419921875 MULTI HCD FTMS 0 0 0 21476 319931.6875 0.15853484875457294 9 -0.18865966796875 1 Unmodified _FPFQDIEL_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 39.94969957227396 0.23157582791120707 2 D{I|L}E{I|L} 4 4 42.652 0 0 4.2334 0 0 519.2469959943375 0 519.2469959943375 0 24.424712680444358 0 0 0 0.9604093769761877 0 0.3494850021680094 0 + D{I|L}E{I|L} 4.2334 + + 115 NaN NaN 230774.7 NaN 17289 4186 21476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21478 87.143 NaN 1078400 35 0 92017 0.261 + 16224 LPWAEFESL 9 90 546.2739486469965 1090.5333443607929 2 546.27392578125 MULTI HCD FTMS 0 0 0 21476 243571.625 0.351071556909342 -4 0.10906982421875 2 Unmodified _LPWAEFESL_ ENSG00000142273|ENST00000647358|CBLC;nc|ENSG00000142273|Q9ULV8-2|CBLC 125.62461146993168 0.0008703235425492373 2 [{I|L}P]WAE{M(Oxidation (M))|F}ES{I|L} 9 0 + 79.152 0 0 7.2581 7.2581 94.682 0 0 0 10.15773857261054 36.28485385398854 10.15773857261054 33.649502388010305 0 2.3494850021680094 1.0457574905606752 0.3807196863200844 0 + + [{I|L}P]WAE{M(Oxidation (M))|F}ES{I|L};{[TV]|[{I|L}S]}E{M(Oxidation (M))|F}EA[WP]{I|L};[{I|L}P]WAE{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]{[TV]|[{I|L}S]}EA[WP]{I|L} 7.2581;4.1725;4.0696;0.86326 +;-;-;- + 429 NaN NaN 258621.7 NaN 17290 4186 21476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21479 87.147 NaN 297080 35 0 12888 0.261 + 21177 PPTPFKRICP 10 75 578.3207524131933 1154.6269518931865 2 578.3206176757812 MULTI HCD FTMS 0 0 0 21476 124690.9921875 0.34292968831916215 23 -0.5521926879882812 3 Unmodified _PPTPFKRICP_ REV__ENSG00000235034|ENST00000425202|C19orf81 3.2813086475875832 0.45793521633868084 2 Q 1 -1 3.0989 0 0 0.26839 0 0 502.298168789474 521.2581270807249 1023.5562958701989 0 0 0 0 0 0 0 0 0 Q 0.26839 - 11 + NaN NaN 151404.8 NaN 17291 4186 21476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21480 87.15 NaN 145880 35 0 57745 0.261 + 10469 IPDLDWEL 8 38 500.75283433184484 999.4911157304897 2 500.7530212402344 MULTI HCD FTMS 0 0 0 21476 59083.359375 0.3097211216988873 9 -0.18865966796875 4 Unmodified _IPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 16.942295170755138 0.46913822049235215 2 WE{I|L} 3 5 34.253 0 0 3.427 0 0 553.2745838849625 0 553.2745838849625 0 30.273109370204452 0 0 0 0.805462187404089 0 0 0 + WE{I|L} 3.427 + + 14 NaN NaN 122103.1 NaN 17292 4186 21476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21481 87.153 NaN 241870 35 0 29506 0.261 + 27256 SYPDLLPTF 9 62 526.7686321637001 1051.5227113942 2 526.7691040039062 MULTI HCD FTMS 0 0 0 21476 65741.03125 0.045764986488350305 13 -0.301483154296875 5 Unmodified _SYPDLLPTF_ ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D 26.88365393820708 0.12808753336095696 2 {I|L}V[QA]{I|L}[TP]{M(Oxidation (M))|F} 8 5 32.396 0 0 3.0808 0 0 164.00886969673758 0 164.00886969673758 0 23.433677739595034 0 0 0 1 0 0 0 {I|L}V[QA]{I|L}[TP]{M(Oxidation (M))|F} 3.0808 - 286 + NaN NaN 127477.3 NaN 17293 4186 21476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21482 87.156 NaN 234240 35 0 48165 0.261 + 15331 LPAVFEEVL 9 64 508.7867801173946 1015.5590073015892 2 508.7871398925781 MULTI HCD FTMS 0 0 0 21476 47191.2890625 0.28204839786026503 -3 0.085845947265625 6 Unmodified _LPAVFEEVL_ ENSG00000013364|ENST00000357402|MVP 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}EEV{I|L} 5 4 35.662 0 0 3.5115 0 0 380.2417469709 0 380.2417469709 0 17.703037561203843 0 0 0 0.7614393726401688 0 0 0 + {M(Oxidation (M))|F}EEV{I|L} 3.5115 + + 71 NaN NaN 132668.7 NaN 17294 4186 21476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21484 87.161 NaN 1255200 35 0 37889 0.327 -1 0 119 575.8429850378634 1149.6714171425267 2 575.8428344726562 MULTI HCD FTMS 0 0 0 21483 1061093.5 0.528513328002593 31 -0.7903213500976562 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2159 0 0 984.5928018854939 0 984.5928018854939 0 7.231975075880328 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2159 - 613 + NaN NaN 295843.9 NaN 17295 4187 21483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21485 87.166 NaN 484920 35 0 26834 0.261 + 33696 YKTLKERQR 9 91 611.3562998667795 1220.698046800359 2 611.3561401367188 MULTI HCD FTMS 0 0 0 21483 506179.125 0.6669901610117335 10 -0.2184906005859375 2 Unmodified _YKTLKERQR_ ENSG00000180999|ENST00000367727|C1orf105 6.630372943996041 0.3007538891620783 2 Q 1 8 7.2185 0 0 0.59134 0 0 634.3773813724277 455.25036493164197 1089.6277463040697 0 0 0 0 0 0.5 0 0 0 + Q 0.59134 + + 67 + NaN NaN 169424.3 NaN 17296 4187 21483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21486 87.169 NaN 560360 35 0 87530 0.261 + 10712 IPYSREGEY 9 89 557.2656680714969 1112.5167832097936 2 557.7784423828125 MULTI HCD FTMS 0 0 0 21483 54847.94921875 0.6376778151524446 -3 0.07909393310546875 3 Unmodified _IPYSREGEY_ ENSG00000158125|ENST00000379416|XDH;XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant 18.1463463914782 0.20357593197100715 2 {I|L}P{[DA]|[EG]}[HS]D{I|L}V{M(Oxidation (M))|F} 10 7 + 53.932 0 0 4.8477 4.8477 84.802 0 0 0 12.824609153403514 7.269987279362624 7.269987279362624 6.660006443871893 0 0.3252574989159953 1.3010299956639813 0.3054621874040891 0 {I|L}P{[DA]|[EG]}[HS]D{I|L}V{M(Oxidation (M))|F};{I|L}P{[DA]|[EG]}[WY]TT{M(Oxidation (M))|F};[YV]{[ET]|[MV]}[RP]TT{M(Oxidation (M))|F};[YT]{I|L}D[RP]TT{M(Oxidation (M))|F};[YT]{I|L}P[RD]TT{M(Oxidation (M))|F};[YT][RP]{NN|[MP]|[D{I|L}]|[EV]}TT{M(Oxidation (M))|F} 4.8477;4.2491;1.6659;1.6407;1.0124;0.1277 -;-;-;-;-;- 941 + NaN NaN 177708.7 NaN 17297 4187 21483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21487 87.173 NaN 217810 35 0 22325 0.261 + 14599 LFPIVSDCLA 10 59 539.2838741863419 NaN 0 539.2955322265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LFPIVSDCLA_ REV__ENST00000542527.6_1_16:22092504-22092690:+|nuORF 10.073929032068715 0.33156240198919784 2 EP 2 -1 13.443 0 0 1.2487 0 0 131.07571512605335 716.3247164361936 847.4004315622469 0 0 0 0 0 0.4247425010840047 0 0.2742275032520141 0 EP 1.2487 - 17 + NaN NaN 123309.1 NaN 17298 4187 21483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21488 87.176 NaN 169030 35 0 15441 0.261 + 19693 NWTTAAPLLL 10 54 550.3109668357602 1098.6073807383202 2 550.3116455078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _NWTTAAPLLL_ ENSG00000134324|ENST00000674199|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693|LPIN1 18.373094154950223 0.33925629317698053 2 AP{I|L}{I|L}{I|L} 5 5 39.425 0 0 3.5886 0 0 573.2574330060562 0 573.2574330060562 0 39.42471268044436 0 0 0 0.9247425010840047 0 0 0 + AP{I|L}{I|L}{I|L} 3.5886 + + 17 NaN NaN 106263.7 NaN 17299 4187 21483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21489 87.179 NaN 69776 35 0 16294 0.262 + 25654 SHLPGEEH 8 33 453.2097420853751 NaN 0 453.20916748046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102439.4 NaN 17300 4187 21483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21491 87.184 NaN 1756600 35 0 65845 0.326 + 14120 LAAPLRHAER 10 109 567.3303563093277 1132.6461596854554 2 567.3304443359375 MULTI HCD FTMS 0 0 0 21490 2109377 0.5031111169413974 32 -0.8239974975585938 1 Unmodified _LAAPLRHAER_ ENSG00000150471|ENST00000683033|ADGRL3 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F} 1 10 11.99 0 0 1.0586 0 0 967.5673765817429 0 967.5673765817429 0 -0.5462187404089072 -0.5462187404089072 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0586 - 385 + NaN NaN 307203.5 NaN 17301 4188 21490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21492 87.189 NaN 1753800 35 0 186110 0.228 + 16972 LYIENQFFI 9 84 593.8107380759712 1185.6069232187424 2 593.8109741210938 MULTI HCD FTMS 0 0 0 21490 1373240.5 0.6989017890508191 1 -0.0094757080078125 2 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 144.35026110057638 1.4798765981150827E-05 2 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 105.87 0 0 8.9295 8.9295 89.677 0 0 0 17.772336398234003 88.26680715880207 17.772336398234003 2.230749808046326 0 2.3494850021680094 1.3010299956639813 0.8807196863200843 1.5484550065040281 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]{I|L}EGG{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}][YV]E[QP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8.9295;8.7413;8.1528;6.8936;3.9252;3.7371;1.286 +;-;-;-;-;-;- + 1226 NaN NaN 314537.2 NaN 17302 4188 21490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21494 87.193 NaN 1106900 35 0 289660 0.327 + -1 MIFPIMIEP 9 71 561.7827299515441 NaN 0 561.79541015625 PEAK HCD FTMS 0 0 0 21493 14756.001953125 0.5441382614954129 -3 0.0554656982421875 1 2 Oxidation (M) _M(Oxidation (M))IFPIM(Oxidation (M))IEP_ REV__tr|U7SSU0|U7SSU0_FUSNUPyruvate,phosphatedikinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01376PE=3SV=1 7.910154910731844 0.25691533546754686 2 VVQ{M(Oxidation (M))|F}S 5 -1 22.18 0 0 1.9777 0 0 131.07030266255612 427.1605623834594 558.2308650460155 0 0 0 0 0 0 0 0.6747425010840047 0 VVQ{M(Oxidation (M))|F}S 1.9777 - 228 + NaN NaN 279734.8 NaN 17303 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21495 87.198 NaN 557600 35 0 68138 0.263 + 28059 TGPCFSFP 8 72 428.18883603438786 854.3631191355757 2 428.1888122558594 MULTI HCD FTMS 0 0 0 21493 278021.625 0.4227274748825521 2 -0.0429534912109375 2 Unmodified _TGPCFSFP_ ENST00000295685.14_1_2:219082131-219082197:+|nuORF 5.760428011301431 0.5334459684533844 2 [YV]C{I|L} 4 7 4.5813 0 0 0.53622 0 0 0 373.1244284410066 373.1244284410066 -0.137223499357507 0 -0.137223499357507 0 0 0 0.721246399047171 0 0 [YV]C{I|L} 0.53622 - 22 NaN NaN 174207 NaN 17304 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21496 87.202 NaN 477060 35 0 68143 0.261 -1 LKEHEVEKM 9 83 579.794371850572 1157.574190767944 2 579.794677734375 MULTI HCD FTMS 0 0 0 21493 133247.375 0.41939310340486236 -4 0.08155059814453125 3 Oxidation (M) _LKEHEVEKM(Oxidation (M))_ ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF 24.020572477871973 0.15282392193088168 2 {I|L}[{I|L}P]EEQ{M(Oxidation (M))|F} 7 -1 59.073 0 0 5.1031 0 0 283.1293202130875 0 283.1293202130875 0 42.41721358325307 0 0 0 2.079689690656103 0 0.4247425010840047 0.3807196863200844 {I|L}[{I|L}P]EEQ{M(Oxidation (M))|F} 5.1031 - 419 NaN NaN 166774.1 NaN 17305 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21497 87.205 NaN 283670 35 0 42549 0.261 -1 0 73 597.8564615606568 1193.6983701881136 2 597.8558959960938 MULTI HCD FTMS 0 0 0 21493 124009.1875 0.15264493924889175 40 -1.0645751953125 4 NaN NaN 2 S 1 -1 5.4846 0 0 0.45946 0 0 407.3051949945573 696.3447359674436 1103.649930962001 0 0 0 0 0 0 0 0 0 S 0.45946 - 10 + NaN NaN 136194.2 NaN 17306 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21498 87.208 NaN 410700 35 0 45698 0.261 + 31786 VYLSNVVLF 9 72 527.3027250898497 1052.5908972464993 2 527.302734375 MULTI HCD FTMS 0 0 0 21493 74931.859375 0.11227240534531795 -8 0.18726348876953125 5 Unmodified _VYLSNVVLF_ ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant 69.10491478415734 0.009377850133389008 2 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F} 9 2 + 76.469 0 0 7.2648 7.2648 92.677 0 0 0 5.6424927368725974 67.00495338161453 5.6424927368725974 13.571231544599485 0 2.5356668758921828 0 0 1.1549471895720984 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YT[QA]V{I|L}{M(Oxidation (M))|F};[{I|L}V]YSGGVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YSKSP{I|L}{M(Oxidation (M))|F} 7.2648;5.9755;5.2928;4.7764 -;-;-;- 519 NaN NaN 150982 NaN 17307 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21499 87.212 NaN 203570 35 0 15370 0.261 + 9864 IACPPEEFTV 10 63 553.2653592389781 1104.5161655447562 2 553.263916015625 MULTI HCD FTMS 0 0 0 21493 75482.0390625 0.8886562580968683 1 -0.02950286865234375 6 Unmodified _IACPPEEFTV_ REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF 29.081581746732265 0.240155558137004 2 E{M(Oxidation (M))|F}ES{I|L} 5 -1 53.549 0 0 4.8482 0 0 481.23262221504064 0 481.23262221504064 0 26.82915195468334 0 0 0 1.7302046884880937 0 0.3494850021680094 0 E{M(Oxidation (M))|F}ES{I|L} 4.8482 - 333 NaN NaN 114245.3 NaN 17308 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21500 87.215 NaN 62362 35 0 15700 0.262 -1 WNWFQLRCM 9 27 452.8704162373062 NaN 0 452.8809509277344 PEAK HCD FTMS 0 0 0 21493 18307.31640625 0.5545286928573449 2 -0.0429534912109375 7 Carbamidomethyl (C),Oxidation (M) _WNWFQLRC(Carbamidomethyl (C))M(Oxidation (M))_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF 0.26902006276349055 0.29394320858957723 2 E 1 -1 3.9794 0 0 0.44033 0 0 466.5133411642624 305.1370943658813 771.6504355301437 0 0 0 0 0 0 0 0 0 E 0.44033 - 1 + NaN NaN 96524.3 NaN 17309 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21501 87.218 NaN 98052 35 0 11231 0.261 + -1 NEWCWGTF 8 45 550.2175899454562 NaN 0 549.7714233398438 PEAK HCD FTMS 0 0 0 21493 8565 1 0 0 8 Carbamidomethyl (C) _NEWC(Carbamidomethyl (C))WGTF_ REV__ENST00000299824.5_1_20:37548228-37548288:+|nuORF 5.760428011301431 0.38822285293237185 2 P 1 -1 5.4846 0 0 0.49931 0 0 357.08665586571857 641.2694796197874 998.356135485506 0 0 0 0 0 0 0 0 0 P 0.49931 - 5 + NaN NaN 94183 NaN 17310 4189 21493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21503 87.223 NaN 3390100 35 0 649580 0.327 + 17366 LYQFNPAFF 9 102 573.7843574036401 1145.5541618740801 2 573.7844848632812 MULTI HCD FTMS 0 0 0 21502 2220782.5 0.6111639996028834 3 -0.066375732421875 1 Unmodified _LYQFNPAFF_ ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K 104.79918948944588 0.003791450360204016 2 [Y{I|L}]Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 100.2 0 0 8.7468 8.7468 93.061 0 0 0 16.690067809585756 16.478174818886373 16.478174818886373 9.208187539523749 0 2.7614393726401687 1.3010299956639813 0 1.274227503252014 + + [Y{I|L}]Q{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}NPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}YGAPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]{I|L}{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]Q{M(Oxidation (M))|F}[PA]N{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][AG]{M(Oxidation (M))|F}GGPA{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}QY{I|L}PA{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}YQPA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.7468;7.943;7.943;7.2899;6.7163;6.4861;6.0746;6.0307;5.7407;5.5471 +;-;-;-;-;-;-;-;-;- + 4401 NaN NaN 603165.9 NaN 17311 4190 21502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21504 87.228 NaN 239120 35 0 40101 0.261 + 28278 TLPFRIFYF 9 65 602.3318986566195 1202.649244380039 2 602.56640625 MULTI HCD FTMS 0 0 0 21502 63284.62890625 0.23387877399554718 8 -0.1964874267578125 2 Unmodified _TLPFRIFYF_ ENSG00000139679|ENST00000620633|LPAR6;LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant 10.799506525563784 0.2670509983294061 2 [{I|L}T][EP]K 5 6 20.251 0 0 1.6838 0 0 0 631.2897432916624 631.2897432916624 1.2712113930952462 0 0 0 0 0.5 1.6989700043360187 0 0 [{I|L}T][EP]K 1.6838 - 271 + NaN NaN 130125.8 NaN 17312 4190 21502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21505 87.232 NaN 94416 35 0 12990 0.263 -1 0 39 478.78589443056103 955.5572359279221 2 478.7854919433594 MULTI HCD FTMS 0 0 0 21502 17527.60546875 0.031499468272765965 15 -0.37172698974609375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 107925.8 NaN 17313 4190 21502 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21507 87.237 NaN 998560 35 0 149700 0.327 + 18923 NAFEELVAF 9 74 520.2584093062131 1038.5022656792262 2 520.2584838867188 MULTI HCD FTMS 0 0 0 21506 438568.1875 0.04988259082764815 14 -0.3582763671875 1 Unmodified _NAFEELVAF_ ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;nc|ENSG00000112118|P25205-2|MCM3 110.6747026088012 0.0028322563155251486 2 NA{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F} 9 0 + 84.135 0 0 8.1016 8.1016 93.305 0 0 0 73.67722213736918 16.478174818886373 16.478174818886373 10.796896906561031 0 2.6505149978319906 0 0.3807196863200844 0 + + NA{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}EE{I|L}VA{M(Oxidation (M))|F};NA{M(Oxidation (M))|F}E[{I|L}V]EA{M(Oxidation (M))|F};QG{M(Oxidation (M))|F}E[{I|L}V]EA{M(Oxidation (M))|F} 8.1016;7.0619;5.3331;4.2934 +;-;-;- + 223 + NaN NaN 240816.9 NaN 17314 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21508 87.241 NaN 626210 35 0 212410 0.261 + 5970 FPDQLYDAVF 10 65 607.7901649923604 1213.5657770515206 2 607.7904052734375 MULTI HCD FTMS 0 0 0 21506 402325.53125 0.6899182596059994 6 -0.143218994140625 2 Unmodified _FPDQLYDAVF_ ENSG00000175274|ENST00000525680|TP53I11 29.84058131909904 0.23356904650364865 2 [Y{I|L}][DG]PA{M(Oxidation (M))|F}DAV{M(Oxidation (M))|F} 11 6 + 49.569 0 0 4.0846 4.0846 86.646 0 0 0 2.028307748719911 28.14213954960291 2.028307748719911 9.957002459026782 0 1.274227503252014 1.5228787452803376 0.3807196863200844 0 [Y{I|L}][DG]PA{M(Oxidation (M))|F}DAV{M(Oxidation (M))|F};[Y{I|L}][VP][C(Carbamidomethyl (C))M]WV{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[CT]|[{M(Oxidation (M))|F}G]}PA{M(Oxidation (M))|F}WV{M(Oxidation (M))|F};[YC(Carbamidomethyl (C))]QRRDAV{M(Oxidation (M))|F} 4.0846;3.2641;2.0398;1.6114 -;-;-;- 209 NaN NaN 183646.9 NaN 17315 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21509 87.245 NaN 1060400 35 0 380440 0.261 + 33907 YLPPLFWRF 9 89 619.8399157076639 1237.6652784821276 2 620.34130859375 MULTI HCD FTMS 0 0 0 21506 225888.921875 0.5668835037578029 1 -0.03973388671875 3 Unmodified _YLPPLFWRF_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 36.04419817259434 0.08350412372117409 2 [Y{I|L}]PREQT 7 6 50.489 0 0 4.0794 0 0 0 347.22628857417766 347.22628857417766 28.265610273013166 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}]PREQT 4.0794 - 445 NaN NaN 249005.3 NaN 17316 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21510 87.248 NaN 525480 35 0 82883 0.261 -1 0 71 584.3563254708603 1166.6980980085204 2 584.3566284179688 MULTI HCD FTMS 0 0 0 21506 96020.515625 0.15243946786972862 28 -0.7448654174804688 4 NaN NaN 2 [Y{I|L}]QYA{I|L}{[DS]|[MA]|[CV]|TT}V 9 -1 29.337 0 0 2.5145 0 0 0 111.13662811273699 111.13662811273699 8.094399836060774 0 0 0 0 0 2 0 0.3807196863200844 [Y{I|L}]QYA{I|L}{[DS]|[MA]|[CV]|TT}V 2.5145 - 373 NaN NaN 181713.4 NaN 17317 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21511 87.252 NaN 248240 35 0 22274 0.261 + -1 YRAKTCKVF 9 81 586.8172277341328 NaN 0 586.834228515625 PEAK HCD FTMS 0 0 0 21506 9603.7421875 0.3047993829523286 4 -0.090240478515625 5 Carbamidomethyl (C) _YRAKTC(Carbamidomethyl (C))KVF_ REV__ENSG00000242485|ENST00000344843|MRPL20;REV__ENST00000487659.1_1_1:1342042-1342597:-|nuORF;REV__nc|ENSG00000242485|Q9BYC9-2|MRPL20 6.2057823575117 0.2651744870083793 2 {I|L}W 2 -1 7.9588 0 0 0.6793 0 0 132.09954370656106 737.3508394830686 869.4503831896297 0 0 0 0 0 0 0 0 0 {I|L}W 0.6793 - 181 + NaN NaN 145792.3 NaN 17318 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21512 87.255 NaN 835800 35 0 108230 0.261 + 28161 TKDEVLYVF 9 99 557.2930014298818 NaN 0 557.3031616210938 PEAK HCD FTMS 0 0 0 21506 12814.92578125 0.5685708799152573 1 -0.03973388671875 6 Unmodified _TKDEVLYVF_ ENSG00000138760|ENST00000264896|SCARB2;nc|ENSG00000138760|Q14108-2|SCARB2 28.486842064014134 0.13043271994793734 2 VY{I|L}VPNP 7 8 26.838 0 0 2.4123 0 0 165.05820804566798 162.05564294986564 327.11385099553365 0 0 0 0 0 0 0 0 0.9194451763165201 VY{I|L}VPNP 2.4123 - 1031 + NaN NaN 221088.9 NaN 17319 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21513 87.258 NaN 107140 35 0 14668 0.262 + -1 LYLESKTMHA 10 48 604.8013719332455 1207.588190933291 2 604.8016967773438 MULTI HCD FTMS 0 0 0 21506 60879.8046875 0.27809318926730653 4 -0.090240478515625 7 Oxidation (M) _LYLESKTM(Oxidation (M))HA_ REV__ENSG00000111666|ENST00000229266|CHPT1 26.268140514670165 0.2654086933305545 2 {I|L}Y{I|L}E 4 -1 53.8 0 0 4.4552 0 0 0 686.2904757135374 686.2904757135374 44.06804392152253 0 0 0 0 1 1.6989700043360187 0.4247425010840047 0 {I|L}Y{I|L}E 4.4552 + + 14 + NaN NaN 108657.8 NaN 17320 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21514 87.262 NaN 210560 35 0 52175 0.261 -1 0 36 647.3941095790251 646.386833112425 1 647.3942260742188 MULTI HCD FTMS 0 0 0 21506 96948.6328125 0.6202034461519516 -5 0.098419189453125 8 NaN NaN 2 M 1 -1 3.9794 0 0 0.61564 0 0 72.04364571183756 440.28022180728755 512.3238675191251 0 0 0 0 0 0 0 0 0 M 0.61564 - 5 + NaN NaN 122611.1 NaN 17321 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21515 87.265 NaN 132230 35 0 15301 0.262 -1 0 50 531.2496457027006 1060.4847384722011 2 531.2501831054688 MULTI HCD FTMS 0 0 0 21506 57638.25390625 0.038144457420596495 14 -0.3582763671875 9 NaN NaN 2 A{M(Oxidation (M))|F} 2 -1 30.969 0 0 2.9203 0 0 824.3688154759105 0 824.3688154759105 0 10.791812460476251 0 0 0 1 0 0 0 A{M(Oxidation (M))|F} 2.9203 - 52 + NaN NaN 109877.4 NaN 17322 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21516 87.268 NaN 184390 35 0 30140 0.261 + 31403 VYALPTIAF 9 49 497.78376911218504 993.5529852911701 2 497.7840270996094 MULTI HCD FTMS 0 0 0 21506 58493.35546875 0.9285311320214191 -2 0.0429534912109375 10 Unmodified _VYALPTIAF_ ENSG00000111371|ENST00000398637|SLC38A1 23.1484247019978 0.1603590852062899 2 T{I|L}PA{M(Oxidation (M))|F} 5 5 44.949 0 0 4.524 0 0 446.25254269261717 0 446.25254269261717 0 39.463950151760656 0 0 0 1 0 0 0 T{I|L}PA{M(Oxidation (M))|F} 4.524 - 103 + NaN NaN 110128.5 NaN 17323 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21517 87.272 NaN 163050 35 0 18137 0.261 + 28608 TQKDRCMA 8 41 476.7208386660537 951.4271243989074 2 476.72088623046875 MULTI HCD FTMS 0 0 0 21506 19866.58203125 0.21223776194593655 -11 0.25298309326171875 11 Unmodified _TQKDRCMA_ REV__ZNF804A|p.E289Q|1|0.13|ENSG00000170396|chr2:184936261-184936261|G/C|missense_variant 0.7936320650641473 0.540814922690045 2 H 1 -1 6.9897 0 0 0.73465 0 0 203.0415141647698 608.3032905958619 811.3448047606316 0 0 0 0 0 0 0 0 0 H 0.73465 - 4 + NaN NaN 116827.7 NaN 17324 4191 21506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21519 87.276 NaN 484450 35 0 17164 0.327 -1 0 116 589.3429545551332 1176.6713561770664 2 589.3430786132812 MULTI HCD FTMS 0 0 0 21518 326000.6875 0.2100725296432818 43 -1.1390609741210938 1 NaN NaN 2 QV[NS]V 5 -1 13.339 0 0 1.1336 0 0 261.2139109639789 385.17282007706416 646.386731041043 0 0 0 0 0 0 0 0.5010912013506126 0 QV[NS]V 1.1336 - 570 + NaN NaN 166968.3 NaN 17325 4192 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21520 87.281 NaN 1149800 35 0 292110 0.261 + -1 LYQLHSTCF 9 107 584.7759836082182 1167.5374142832363 2 584.776123046875 MULTI HCD FTMS 0 0 0 21518 120642.109375 0.24901610660609252 5 -0.103485107421875 2 Carbamidomethyl (C) _LYQLHSTC(Carbamidomethyl (C))F_ REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|13|2|sense 29.081581746732265 0.1154664336125038 2 {I|L}YQ{M(Oxidation (M))|F}N 5 -1 66.502 0 0 5.6959 0 0 0 499.1959715018364 499.1959715018364 32.78582397795077 0 0 0 0 1.524227503252014 2 0 0.7614393726401688 {I|L}YQ{M(Oxidation (M))|F}N 5.6959 - 1611 + NaN NaN 276752.3 NaN 17326 4192 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21521 87.285 NaN 218310 35 0 55770 0.261 + -1 DYVYDKCMF 9 47 600.2401897787323 1198.4658266242645 2 600.23974609375 MULTI HCD FTMS 0 0 0 21518 43735.734375 0.16635198057896536 5 -0.103485107421875 3 Oxidation (M) _DYVYDKCM(Oxidation (M))F_ REV__ENSG00000247746|ENST00000500968|USP51 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.33204 0 0 131.01182827600434 917.3565157525999 1048.3683440286043 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33204 + + 2 + NaN NaN 132989.7 NaN 17327 4192 21518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21523 87.29 NaN 867240 35 0 36159 0.327 -1 0 110 575.8429850378634 1149.6714171425267 2 575.843017578125 MULTI HCD FTMS 0 0 0 21522 804937.9375 0.4009264293708973 37 -1.0014724731445312 1 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 13.188 0 0 1.1471 0 0 837.5572407163855 0 837.5572407163855 0 1.6195437047215933 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.1471 - 317 + NaN NaN 224029.9 NaN 17328 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21524 87.294 NaN 1039500 35 0 189970 0.261 + 29151 TYINPFVSF 9 77 544.2768787114566 1086.539204489713 2 544.27685546875 MULTI HCD FTMS 0 0 0 21522 566259.75 1 0 0 2 Unmodified _TYINPFVSF_ ENSG00000113615|ENST00000398844|SEC24A;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant 70.33199760932243 0.0089807860198535 2 [YT]{[NV]|[RG]}P{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F} 9 2 + 67.686 0 0 6.2295 6.2295 90.392 0 0 0 2.4595372608497 38.07151633614488 2.4595372608497 12.060544824331245 0 2 1.154901959985743 0.4247425010840047 0.3807196863200844 [YT]{[NV]|[RG]}P{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}P{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}P[SG]VS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}PA[TA]S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YN]P{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};[YT]{I|L}{[RE]|[WV]}[TA]S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{[QD]|[EN]|[WG]|[KD]|[RS]}S{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}P[SG]VS{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}PA[TA]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}PAY[SG]V 6.2295;5.1195;5.0973;5.0932;5.0516;4.2109;3.6029;3.5807;3.5766;3.0658 -;-;-;-;-;-;-;-;-;- 957 NaN NaN 251334.2 NaN 17329 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21525 87.298 NaN 364980 35 0 28782 0.261 + 33697 YKTLKERQR 9 82 611.3562998667795 1220.698046800359 2 611.3564453125 MULTI HCD FTMS 0 0 0 21522 381883.4375 0.5032062423867031 16 -0.400848388671875 3 Unmodified _YKTLKERQR_ ENSG00000180999|ENST00000367727|C1orf105 6.630372943996041 0.3007538891620783 2 M{[MG]|[TS]}{[HG]|PP}[{M(Oxidation (M))|F}V] 7 8 8.8414 0 0 0.72429 0 0 443.30284316230626 0 443.30284316230626 0 -0.1379620034479938 -0.1379620034479938 0 0 0.6861818737241735 0 0.3494850021680094 0 M{[MG]|[TS]}{[HG]|PP}[{M(Oxidation (M))|F}V] 0.72429 - 35 NaN NaN 150727.9 NaN 17330 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21526 87.301 NaN 177570 35 0 32155 0.264 + 25206 SAPCAPFF 8 36 420.19141298240754 838.3682730316151 2 420.1912841796875 MULTI HCD FTMS 0 0 0 21522 210774 0.5175575446716635 -3 0.066375732421875 4 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 10.986 0 0 1.3104 0 0 155.09582537712134 567.1655977838499 722.2614231609712 0 0 0 0 0 0.7887254899964358 0 0 0 {I|L} 1.3104 - 11 + NaN NaN 118166.8 NaN 17331 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21527 87.305 NaN 281240 35 0 75461 0.261 + 35287 YVVVFYLN 8 68 508.7756637760776 NaN 0 508.78662109375 PEAK HCD FTMS 0 0 0 21522 10679.1416015625 0.5993253299362521 3 -0.07688140869140625 5 Unmodified _YVVVFYLN_ REV__SLC11A2|p.M492L|1|0.5|ENSG00000110911|chr12:50990896-50990896|T/A|missense_variant 10.183394434864962 0.38822285293237185 2 VEE{M(Oxidation (M))|F} 4 -1 11.146 0 0 1.0976 0 0 131.07231920814746 377.21982752017817 508.29214672832563 0 0 0 0 0 0 0 0 0 VEE{M(Oxidation (M))|F} 1.0976 - 31 + NaN NaN 139094.3 NaN 17332 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21528 87.308 NaN 325980 35 0 46577 0.261 + 20462 PASPFFTEL 9 57 504.75548378535154 1007.4964146375031 2 504.7557678222656 MULTI HCD FTMS 0 0 0 21522 71922.453125 0.035639530792740674 16 -0.400848388671875 6 Unmodified _PASPFFTEL_ ENST00000562306.5_1_15:62534969-62535489:-|nuORF 11.640296217721598 0.25978676193971967 2 E{I|L} 2 7 24.222 0 0 2.4041 0 0 747.3588926230857 0 747.3588926230857 0 9.617581349478641 0 0 0 0.3252574989159953 0 0 0 + E{I|L} 2.4041 + + 17 NaN NaN 144896.2 NaN 17333 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21529 87.311 NaN 204410 35 0 46538 0.261 + 19038 NDSLYLYI 8 45 500.75283433184484 999.4911157304897 2 500.7531433105469 MULTI HCD FTMS 0 0 0 21522 103645.15625 0.5433187007641513 16 -0.400848388671875 7 Unmodified _NDSLYLYI_ REV__ENSG00000100399|ENST00000216241|CHADL;REV__nc|ENSG00000100399|Q6NUI6-2|CHADL 8.593279151180031 0.5292430274356741 2 WE{I|L} 3 -1 24.055 0 0 2.4067 0 0 553.2739124982437 0 553.2739124982437 0 3.0854562117252016 0 0 0 0 0 0.3252574989159953 0 WE{I|L} 2.4067 - 23 NaN NaN 142170.8 NaN 17334 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21530 87.314 NaN 113000 35 0 11631 0.261 -1 0 47 643.2923389855031 642.285062518903 1 642.8758544921875 MULTI HCD FTMS 0 0 0 21522 25774.423828125 0.21722187150254238 6 -0.15013885498046875 8 NaN NaN 2 {I|L} 1 -1 3.9794 0 0 0.61957 0 0 173.0685535851124 353.1072176568969 526.1757712420093 0 0 0 0 0 0 0 0 0 {I|L} 0.61957 - 10 + NaN NaN 127256.9 NaN 17335 4193 21522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21532 87.319 NaN 125770 35 0 13107 0.326 + 14152 LAFEFDPEL 9 45 540.7659447385857 1079.5173365439714 2 540.765869140625 MULTI HCD FTMS 0 0 0 21531 38305.92578125 0.6085350770408676 1 -0.00759124755859375 1 Unmodified _LAFEFDPEL_ ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10 18.1463463914782 0.20357593197100715 2 {M(Oxidation (M))|F}D[EP]{I|L} 5 4 34.961 0 0 3.2386 0 0 460.2323475568375 0 460.2323475568375 0 20.981362441963327 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}D[EP]{I|L} 3.2386 + + 28 NaN NaN 105963.8 NaN 17336 4194 21531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21534 87.327 NaN 1152200 35 0 37674 0.327 -1 0 124 567.3303563093277 1132.6461596854554 2 567.330322265625 MULTI HCD FTMS 0 0 0 21533 1209042.375 0.28837076526184263 39 -1.0689315795898438 1 NaN NaN 2 HT[{M(Oxidation (M))|F}V] 4 -1 13.536 0 0 1.195 0 0 630.3462471983743 0 630.3462471983743 0 -0.8050959409712473 -0.8050959409712473 0 0 0.6139829889124311 0 0.3494850021680094 0 HT[{M(Oxidation (M))|F}V] 1.195 - 826 NaN NaN 266295.6 NaN 17337 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21535 87.331 NaN 1172600 35 0 317070 0.261 + 5834 FPDASFQVVL 10 70 561.7952787985263 1121.5760046638525 2 561.7954711914062 MULTI HCD FTMS 0 0 0 21533 407654.21875 0.30305757225815977 13 -0.343780517578125 2 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 61.60191391372663 0.03559593591905874 2 S{M(Oxidation (M))|F}QVV{I|L} 6 4 71.943 0 0 6.4145 0 0 430.18586928535314 0 430.18586928535314 0 67.33919093648403 0 0 0 1.9247425010840047 0 0.7742275032520141 0.3807196863200844 + S{M(Oxidation (M))|F}QVV{I|L} 6.4145 + + 256 NaN NaN 284428.6 NaN 17338 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21536 87.335 NaN 637710 35 0 61056 0.261 + 16973 LYIENQFFI 9 76 593.8107380759712 1185.6069232187424 2 593.8108520507812 MULTI HCD FTMS 0 0 0 21533 246609.203125 0.12551014426129972 8 -0.2120513916015625 3 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 75.76082778847304 0.0072241045649327805 2 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 90.429 0 0 7.6272 7.6272 91.435 0 0 0 15.871280189675971 83.43880628309982 15.871280189675971 9.208187539523749 0 2.3494850021680094 1.2218487496163564 0 1.1861818737241734 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]AA[DV]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV][VG][DV]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[RH][QP]NK{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[RH][QP]GGK{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.6272;6.8505;6.8505;5.0771;4.2351;2.9157;2.5385;2.0593;1.7618;1.2826 +;-;-;-;-;-;-;-;-;- + 695 NaN NaN 198978.6 NaN 17339 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21537 87.338 NaN 453970 35 0 81742 0.261 -1 0 70 579.794371850572 1157.574190767944 2 579.7947998046875 MULTI HCD FTMS 0 0 0 21533 159178.734375 0.5010114713748732 2 -0.052978515625 4 NaN NaN 2 EEQ{M(Oxidation (M))|F} 4 -1 60.547 0 0 5.2305 0 0 606.3527705257202 0 606.3527705257202 0 52.559034764951846 0 0 0 1.7302046884880937 0 0.75 0.3807196863200844 EEQ{M(Oxidation (M))|F} 5.2305 - 189 NaN NaN 169131.1 NaN 17340 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21538 87.342 NaN 312980 35 0 67195 0.261 + 15332 LPAVFEEVL 9 73 508.7867801173946 1015.5590073015892 2 509.3063049316406 MULTI HCD FTMS 0 0 0 21533 42264.26953125 0.40003984997950565 5 -0.136444091796875 5 Unmodified _LPAVFEEVL_ ENSG00000013364|ENST00000357402|MVP 15.847184025352803 0.2234401846867398 2 V{I|L} 2 7 25.217 0 0 2.483 0 0 785.393658476642 0 785.393658476642 0 12.74227503252014 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.483 + + 56 NaN NaN 144217.8 NaN 17341 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21539 87.345 NaN 160980 35 0 11274 0.261 + 5653 FNIWKKLFV 9 65 597.8563794416392 NaN 0 597.856201171875 PEAK HCD FTMS 0 0 0 21533 105526.6640625 0.23353121878234145 -8 0.1655120849609375 6 Unmodified _FNIWKKLFV_ ENSG00000205177|ENST00000379011|C11orf91;nc|nan|Q3C1V1-2|C11orf91 4.3292370932331545 0.2742679634796037 2 V 1 8 8.4113 0 0 0.70464 0 0 867.5048598580846 224.09736047916252 1091.6022203372472 0 0 0 0 0 0.3807196863200844 0 0 0 + V 0.70464 + + 14 + NaN NaN 138981.8 NaN 17342 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21540 87.348 NaN 130010 35 0 41927 0.263 + 30232 VIPEVIKN 8 44 456.28032421072623 NaN 0 456.2802429199219 PEAK HCD FTMS 0 0 0 21533 29771.19921875 0.47243082632764466 -1 0.00759124755859375 7 Unmodified _VIPEVIKN_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 2.577480529830294 0.38822285293237185 2 N 1 7 3.0989 0 0 0.34034 0 0 490.34093909352436 303.14438806705317 793.4853271605775 0 0 0 0 0 0 0 0 0 + N 0.34034 + + 2 + NaN NaN 108281.1 NaN 17343 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21541 87.352 NaN 221530 35 0 27210 0.261 + 32958 YALLYSQEL 9 68 550.2869909192423 1098.5594289052844 2 550.7901000976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YALLYSQEL_ ENST00000592495.1_1_19:11959591-11959708:+|nuORF 58.678817012210395 0.019429721296335044 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{I|L}S{I|L}S{M(Oxidation (M))|F} 10 6 + 63.81 0 0 5.8085 5.8085 85.211 0 0 0 2.703489857067396 36.40092514408778 2.703489857067396 3.711375162600703 0 0.4247425010840047 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{I|L}S{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[DA]|[EG]}{I|L}S{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GE{I|L}{I|L}SS{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[DA]|[EG]}{I|L}SS{M(Oxidation (M))|F}{I|L};[YQ]E{I|L}{I|L}S{I|L}S{M(Oxidation (M))|F};[YQ]E{I|L}{I|L}SS{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}[YQ]{I|L}S{I|L}S{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YQ]{I|L}SS{M(Oxidation (M))|F}{I|L} 5.8085;5.4707;5.1774;4.8396;3.5768;2.9457;2.3043;1.6732 -;-;-;-;-;-;-;- 376 NaN NaN 114598.5 NaN 17344 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21542 87.355 NaN 94337 35 0 13013 0.261 + 34099 YNLVLMLQLH 10 50 622.3475682117502 NaN 0 622.3473510742188 PEAK HCD FTMS 0 0 0 21533 31401.962890625 0.8937178289919844 -1 0.00759124755859375 9 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.337106189561315 2 {I|L} 1 -1 6.9897 0 0 0.56247 0 0 277.16478866783774 849.4050482072481 1126.569836875086 0 0 0 0 0 0 0 0 0 {I|L} 0.56247 + + 17 + NaN NaN 106906.4 NaN 17345 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21543 87.358 NaN 59663 35 0 5608.7 0.263 -1 0 25 479.38449946416836 478.37722299756837 1 479.3843688964844 MULTI HCD FTMS 0 0 0 21533 25516.611328125 0.0037378605140409213 40 -1.0885543823242188 10 NaN NaN 2 M 1 -1 3.0989 0 0 0.6478 0 0 67.06391230596525 277.2512301080688 344.315142414034 0 0 0 0 0 0 0 0 0 M 0.6478 - 2 + NaN NaN 104185.6 NaN 17346 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21544 87.362 NaN 39761 35 0 4980.5 0.261 + 22346 QPLLRQQG 8 40 470.2722705827744 938.5299882323488 2 470.2720642089844 MULTI HCD FTMS 0 0 0 21533 25182.171875 0.0284293911464422 16 -0.41973876953125 11 Unmodified _QPLLRQQG_ REV__ENST00000602438.1_1_19:19260237-19296893:-|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103259.9 NaN 17347 4195 21533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21546 87.367 NaN 839680 35 0 143640 0.326 + 31787 VYLSNVVLF 9 67 527.3027250898497 1052.5908972464993 2 527.3025512695312 MULTI HCD FTMS 0 0 0 21545 593518.75 0.8892849881992726 -1 0.0395660400390625 1 Unmodified _VYLSNVVLF_ ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant 111.28704002717404 0.0027322905094575235 2 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F} 9 2 + 108.16 0 0 10.275 10.275 95.87 0 0 0 12.245462655597095 16.478174818886373 12.245462655597095 12.245462655597095 0 2.4247425010840047 1.5228787452803376 1.079689690656103 1.2302046884880937 [{I|L}V]YSNVV{I|L}{M(Oxidation (M))|F};[YV]TVNVV{I|L}{M(Oxidation (M))|F};[YV]{I|L}SNVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YSGGVV{I|L}{M(Oxidation (M))|F};[{I|L}V]YT[QA]V{I|L}{M(Oxidation (M))|F};[YV]TVGGVV{I|L}{M(Oxidation (M))|F};[YV]{I|L}SGGVV{I|L}{M(Oxidation (M))|F};[YV]T{I|L}[QA]V{I|L}{M(Oxidation (M))|F};[YV]{I|L}T[QA]V{I|L}{M(Oxidation (M))|F};[{I|L}V]YSK[PS]{I|L}{M(Oxidation (M))|F} 10.275;9.1121;8.9934;8.2319;7.7342;7.0685;6.9498;6.5709;6.4522;6.4468 -;-;+;-;-;-;-;-;-;- + 679 NaN NaN 221288.2 NaN 17348 4196 21545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21547 87.371 NaN 447350 35 0 69435 0.261 + 31446 VYDELFYTL 9 79 581.7865628901865 1161.5585728471729 2 582.28857421875 MULTI HCD FTMS 0 0 0 21545 104028.5078125 0.9256558367315841 -1 0.0395660400390625 2 Unmodified _VYDELFYTL_ ENSG00000103966|ENST00000220325|EHD4 58.678817012210395 0.019429721296335044 2 {I|L}{M(Oxidation (M))|F}YT{I|L} 5 4 49.112 0 0 4.2281 0 0 506.20213515449376 0 506.20213515449376 0 10.74994107874317 0 0 0 1.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F}YT{I|L} 4.2281 + + 1036 NaN NaN 184327.8 NaN 17349 4196 21545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21548 87.375 NaN 41366 35 0 5221.1 0.263 + -1 MFKQMPEVWE 10 28 452.8704162373062 NaN 0 452.8700256347656 PEAK HCD FTMS 0 0 0 21545 16805.15625 0.5090282552496068 7 -0.1724853515625 3 2 Oxidation (M) _M(Oxidation (M))FKQM(Oxidation (M))PEVWE_ REV__ENSG00000011566|ENST00000263881|MAP4K3;REV__nc|ENSG00000011566|Q8IVH8-2|MAP4K3;REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93251.3 NaN 17350 4196 21545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21550 87.38 NaN 456980 35 0 137510 0.327 + 33640 YIWSVDLGDF 10 59 607.7901649923604 1213.5657770515206 2 607.7903442382812 MULTI HCD FTMS 0 0 0 21549 448837.21875 0.7696777081094012 12 -0.31055450439453125 1 Unmodified _YIWSVDLGDF_ REV__ENSG00000064886|ENST00000369748|CHI3L2;REV__nc|ENSG00000064886|Q15782-5|CHI3L2;REV__nc|ENSG00000064886|Q15782-6|CHI3L2 14.838274106304384 0.3723198072575719 2 [Y{I|L}]{[WT]|[RM]}{[CP]|[EA]}DAV{M(Oxidation (M))|F} 10 -1 + 55.379 0 0 4.5633 4.5633 85.357 0 0 0 9.946049681132934 29.69273760456403 9.946049681132934 9.018637558036673 0 0.9247425010840047 1.3979400086720375 0.4247425010840047 0 [Y{I|L}]{[WT]|[RM]}{[CP]|[EA]}DAV{M(Oxidation (M))|F};[Y{I|L}][VP][C(Carbamidomethyl (C))M]WV{M(Oxidation (M))|F};[Y{I|L}][DG]D{[TV]|[{I|L}S]}WV{M(Oxidation (M))|F};[Y{I|L}]{I|L}[TA]{[{M(Oxidation (M))|F}D]|MM}WW;[YN]{[CA]|SS}RRWV{M(Oxidation (M))|F} 4.5633;3.8202;3.3542;1.368;1.2871 -;-;-;-;- 91 NaN NaN 163140.6 NaN 17351 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21551 87.384 NaN 684690 35 0 129570 0.261 + 31910 VYNPVIYVF 9 75 557.3027265175706 1112.590900101941 2 557.3026733398438 MULTI HCD FTMS 0 0 0 21549 244930.859375 0.7909728856871907 3 -0.083465576171875 2 Unmodified _VYNPVIYVF_ ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3 93.88341677533236 0.004424206486747196 2 [YV]N[VP]{I|L}YV{M(Oxidation (M))|F} 9 0 + 88.522 0 0 7.9564 7.9564 94.821 0 0 0 19.71726222832956 69.93887181533495 19.71726222832956 19.564856298445576 0 2.2302046884880937 1.3979400086720375 0 1.0356668758921828 + + [YV]N[VP]{I|L}YV{M(Oxidation (M))|F};[YV]GG[VP]{I|L}YV{M(Oxidation (M))|F};[YV]{I|L}AA[PA]YV{M(Oxidation (M))|F};[YV]N[VP]{I|L}{M(Oxidation (M))|F}[YV];[YV]{I|L}YVV[NP]{M(Oxidation (M))|F};[YV]GG[VP]{I|L}{M(Oxidation (M))|F}[YV];[Y{I|L}][Q{I|L}][PA]YV{M(Oxidation (M))|F};[Y{I|L}]VAA[PA]YV{M(Oxidation (M))|F};[YV]{I|L}Y[QA][{I|L}P]{M(Oxidation (M))|F};[YV]{I|L}Y[PS][KP]{M(Oxidation (M))|F} 7.9564;6.1979;5.3632;4.7326;3.7575;3.5627;3.5517;3.4074;3.1293;2.8793 +;-;-;-;-;-;-;-;-;- + 2349 NaN NaN 207053 NaN 17352 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21552 87.388 NaN 357560 35 0 94125 0.261 -1 0 72 584.3563254708603 1166.6980980085204 2 584.3564453125 MULTI HCD FTMS 0 0 0 21549 69770.9375 0.11076637649822133 34 -0.9307403564453125 3 NaN NaN 2 [Y{I|L}][YQ]A{I|L}CVV 9 -1 29.873 0 0 2.5605 0 0 0 111.13520257974974 111.13520257974974 15.259169494624134 0 0 0 0 0 2 0 0.3252574989159953 [Y{I|L}][YQ]A{I|L}CVV 2.5605 - 390 NaN NaN 150103.3 NaN 17353 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21553 87.392 NaN 448810 35 0 161670 0.261 + 19326 NNPRKLQKQI 10 82 619.8695229941743 1237.7244930551485 2 619.8692626953125 MULTI HCD FTMS 0 0 0 21549 121681.4765625 0.31353758276968524 22 -0.6016464233398438 4 Unmodified _NNPRKLQKQI_ ENSG00000173093|ENST00000308208|CCDC63;ENST00000550317.1_1_12:111284592-111319020:+|nuORF;nc|ENSG00000173093|Q8NA47-2|CCDC63 3.5964929083625545 0.45626689593999237 2 [Y{I|L}]G 3 9 25.062 0 0 2.0248 0 0 0 901.5332143288391 901.5332143288391 14.25968732272281 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]G 2.0248 - 82 NaN NaN 164182.5 NaN 17354 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21554 87.395 NaN 332940 35 0 69018 0.262 + 18769 NAAMVFEFL 9 65 529.2542629116602 1056.4939728901204 2 529.2545166015625 MULTI HCD FTMS 0 0 0 21549 134909.59375 0.9850397234746923 1 -0.03981781005859375 5 Oxidation (M) _NAAM(Oxidation (M))VFEFL_ ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1 47.748688679222035 0.03472022231463587 2 {[WN]|[YH]}CV{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 8 5 {[WN]|[YH]} + + 55.182 1.338 0.44582 5.2232 5.2232 62.641 0 0 0 0 40.477372199242296 0 0 0 1.8494850021680094 0 0.3807196863200844 0 {[WN]|[YH]}CV{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5.2232 - 195 + NaN NaN 137561.3 NaN 17355 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21555 87.398 NaN 195020 35 0 16401 0.261 + 15198 LNFLEPVNNI 10 70 586.8170863547231 NaN 0 586.834228515625 PEAK HCD FTMS 0 0 0 21549 9427.65625 0.3682609949171627 -5 0.103485107421875 6 Unmodified _LNFLEPVNNI_ ENSG00000169071|ENST00000375708|ROR2;ENST00000548585.2_1_9:94518314-94538029:-|nuORF 7.101721422024254 0.3341061997659158 2 {I|L} 1 9 9.877 0 0 0.84302 0 0 132.098283076291 923.4118775686154 1055.5101606449064 0 0 0 0 0 0.28872548999643577 0 0 0 + {I|L} 0.84302 + + 41 + NaN NaN 121062.7 NaN 17356 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21556 87.402 NaN 219120 35 0 29139 0.261 -1 RRNCLLPF 8 58 538.293850034199 1074.5731471351978 2 538.293701171875 MULTI HCD FTMS 0 0 0 21549 78434.2265625 0.9519533637168314 4 -0.10753631591796875 7 Carbamidomethyl (C) _RRNC(Carbamidomethyl (C))LLPF_ ENSG00000165671|ENST00000439151|NSD1;ENST00000602285.1_1_5:176562104-176563088:+|nuORF;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant 19.438996006549623 0.45076845602799126 2 VY{I|L} 3 -1 50.93 0 0 4.7395 0 0 0 696.3328047917428 696.3328047917428 26.861818737241734 0 0 0 0 0.7742275032520141 2 0 0 VY{I|L} 4.7395 - 38 + NaN NaN 127975.3 NaN 17357 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21557 87.405 NaN 126760 35 0 8114.1 0.261 + 25735 SKRRRGLSF 9 58 553.8302504628905 1105.645947992581 2 553.8303833007812 MULTI HCD FTMS 0 0 0 21549 41833 0.22811007648507745 -6 0.143218994140625 8 Unmodified _SKRRRGLSF_ REV__ENST00000245451.8_1_14:54418591-54418858:-|nuORF 2.0597508629832335 0.3354026079994024 2 [{M(Oxidation (M))|F}V]{I|L} 3 -1 22.932 0 0 2.0741 0 0 0 743.436969070959 743.436969070959 6.73393743112328 0 0 0 0 0 1.3979400086720375 0 0 [{M(Oxidation (M))|F}V]{I|L} 2.0741 - 101 NaN NaN 104854.4 NaN 17358 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21558 87.408 NaN 136070 35 0 14197 0.262 -1 FTLTFCCS 8 48 489.7060557528162 977.3975585724324 2 489.70611572265625 MULTI HCD FTMS 0 0 0 21549 46318.49609375 0.7888195183608302 1 -0.03981781005859375 9 Carbamidomethyl (C) _FTLTFC(Carbamidomethyl (C))CS_ OR8K5|p.G170C|1|0.36|ENSG00000181752|chr11:56159810-56159810|C/A|missense_variant 5.230669730166228 0.5342319408533849 2 {I|L} 1 -1 6.9897 0 0 0.71513 0 0 155.09639732368947 706.1948050866133 861.2912024103027 0 0 0 0 0 0 0 0 0 {I|L} 0.71513 + + 2 + NaN NaN 105340.3 NaN 17359 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21559 87.412 NaN 99124 35 0 11295 0.261 -1 VYLRKCTFD 9 47 601.3037878180522 1200.5930227029044 2 601.3024291992188 MULTI HCD FTMS 0 0 0 21549 48801.03125 0.9865991258143172 1 -0.03981781005859375 10 Carbamidomethyl (C) _VYLRKC(Carbamidomethyl (C))TFD_ ENSG00000272333|ENST00000420124|KMT2B 21.74664581756881 0.17247014374749275 2 [YV]{I|L} 3 -1 37.447 0 0 3.1191 0 0 0 822.354380695345 822.354380695345 11.529674602085436 0 0 0 0 1 1.6989700043360187 0 0 [YV]{I|L} 3.1191 + + 37 NaN NaN 110774.3 NaN 17360 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21560 87.415 NaN 73674 35 0 8592.7 0.261 + -1 CSIKPMKLCHV 11 39 637.8244513633175 1273.634349793435 2 638.8539428710938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Oxidation (M) _CSIKPM(Oxidation (M))KLCHV_ REV__ENSG00000087237|ENST00000200676|CETP;REV__nc|ENSG00000087237|P11597-2|CETP 1.0714618166137932 0.41422159895841093 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113752.7 NaN 17361 4197 21549 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21562 87.42 NaN 547070 35 0 175320 0.327 + 33908 YLPPLFWRF 9 91 619.8399157076639 1237.6652784821276 2 619.83984375 MULTI HCD FTMS 0 0 0 21561 104796.046875 0.19721423792781742 11 -0.2707366943359375 1 Unmodified _YLPPLFWRF_ ENSG00000110218|ENST00000227638|PANX1;nc|ENSG00000110218|Q96RD7-2|PANX1 12.531546534597751 0.2520865569484384 2 [Y{I|L}]PV 4 6 37.937 0 0 3.0652 0 0 0 762.3729342096311 762.3729342096311 20.46241115504975 0 0 0 0 0.7134679910804405 2 0 0 [Y{I|L}]PV 3.0652 - 278 + NaN NaN 170831.8 NaN 17362 4198 21561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21563 87.424 NaN 433920 35 0 60141 0.263 + 31160 VTYPPPLTL 9 55 500.78942087248095 999.5642888117619 2 500.78973388671875 MULTI HCD FTMS 0 0 0 21561 158174.75 0.7902118858103303 -1 0.03981781005859375 2 Unmodified _VTYPPPLTL_ ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF;nc|ENSG00000075275|Q9NYQ6|CELSR1 26.88365393820708 0.12808753336095696 2 T{I|L} 2 7 28.856 0 0 2.8869 0 0 767.4215553797303 0 767.4215553797303 0 9.955429885957141 0 0 0 0.5 0 0.28872548999643577 0 + T{I|L} 2.8869 + + 214 NaN NaN 156451.8 NaN 17363 4198 21561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21564 87.428 NaN 255610 35 0 21739 0.261 + -1 IYQFICTLI 9 65 585.8136157652201 NaN 0 585.8134765625 PEAK HCD FTMS 0 0 0 21561 89669.546875 0.6837726260565002 -8 0.1964874267578125 3 Carbamidomethyl (C) _IYQFIC(Carbamidomethyl (C))TLI_ REV__tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1 25.399314129420986 0.1511568710901456 2 {I|L}{M(Oxidation (M))|F} 2 -1 15.969 0 0 1.3653 0 0 131.09346646427235 775.3422335260374 906.4356999903098 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.3653 - 96 + NaN NaN 129303.5 NaN 17364 4198 21561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21565 87.432 NaN 65969 35 0 7914 0.262 + 31404 VYALPTIAF 9 39 497.78376911218504 993.5529852911701 2 497.7836608886719 MULTI HCD FTMS 0 0 0 21561 7838.0322265625 0.12442194293399066 5 -0.11925506591796875 4 Unmodified _VYALPTIAF_ ENSG00000111371|ENST00000398637|SLC38A1 11.640296217721598 0.25978676193971967 2 A{M(Oxidation (M))|F} 2 7 20.261 0 0 2.0392 0 0 757.4337635724625 0 757.4337635724625 0 12.786596949921218 0 0 0 0.3807196863200844 0 0 0 + A{M(Oxidation (M))|F} 2.0392 + + 9 NaN NaN 95992.2 NaN 17365 4198 21561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21566 87.435 NaN 75928 35 0 12734 0.261 + 15603 LPEAFLYIG 9 48 511.7805224486712 1021.5464919641424 2 511.78033447265625 MULTI HCD FTMS 0 0 0 21561 19720.26953125 0.5784299380882462 -3 0.09279632568359375 5 Unmodified _LPEAFLYIG_ ENSG00000165349|ENST00000374299|SLC7A3 12.531546534597751 0.2520865569484384 2 {I|L}P 2 7 24.222 0 0 2.3711 0 0 0 808.3872774713499 808.3872774713499 17.231975075880328 0 0 0 0 0.3252574989159953 0 0 0 + {I|L}P 2.3711 + + 16 + NaN NaN 121111.4 NaN 17366 4198 21561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21568 87.44 NaN 774980 35 0 157210 0.327 + 29152 TYINPFVSF 9 54 544.2768787114566 1086.539204489713 2 544.2769165039062 MULTI HCD FTMS 0 0 0 21567 431069.78125 0.7612580291111986 6 -0.15521240234375 1 Unmodified _TYINPFVSF_ ENSG00000113615|ENST00000398844|SEC24A;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant 93.93812099017352 0.0044227730261779084 2 [YT]{I|L}NP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F} 9 0 + 107.97 0 0 9.9373 9.9373 96.724 0 0 0 16.861818737241734 16.478174818886373 16.478174818886373 17.703037561203843 0 2.9802046884880937 1.5228787452803376 0.7614393726401688 0.8494850021680094 + + [YT]{I|L}NP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]{I|L}GGP{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]{I|L}NP{M(Oxidation (M))|F}[YG]{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP][YQ]{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP][SG]{M(Oxidation (M))|F}{I|L}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VP]{[SA]|[TG]}{M(Oxidation (M))|F}VS{M(Oxidation (M))|F};[YT]{I|L}GGP{M(Oxidation (M))|F}[YG]{I|L};[YT]{I|L}NP[YV]A{M(Oxidation (M))|F};[YT]{I|L}GGP[YV]A{M(Oxidation (M))|F} 9.9373;8.308;5.6466;5.3637;5.2969;5.2277;4.7991;3.8318;2.9843 +;-;-;-;-;-;-;-;- + 283 NaN NaN 213878.6 NaN 17367 4199 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21569 87.444 NaN 606200 35 0 25242 0.261 -1 0 110 575.8429850378634 1149.6714171425267 2 575.843017578125 MULTI HCD FTMS 0 0 0 21567 436116.09375 0.21722229766114237 43 -1.1389083862304688 2 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 13.979 0 0 1.2159 0 0 837.5574535666639 0 837.5574535666639 0 1.0821803938082262 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.2159 - 971 + NaN NaN 184347.6 NaN 17368 4199 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21570 87.448 NaN 375090 35 0 30841 0.261 -1 0 87 611.3561023151733 1220.6976516971465 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21567 330155.46875 0.23003849065825957 -15 0.35742950439453125 3 NaN NaN 2 Q 1 -1 6.5938 0 0 0.54017 0 0 590.3518397848403 499.2760408990844 1089.6278806839248 0 0 0 0 0 0.5 0 0 0 Q 0.54017 - 173 + NaN NaN 145736.3 NaN 17369 4199 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21571 87.452 NaN 452160 35 0 18684 0.261 -1 0 98 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 21567 419159.9375 0.08364992344162929 -25 0.5729293823242188 4 NaN NaN 2 T{[HG]|PP}N 4 -1 14.701 0 0 1.2494 0 0 749.4479237287125 0 749.4479237287125 0 5.849666055014104 0 0 0 0.4247425010840047 0 0.3252574989159953 0 T{[HG]|PP}N 1.2494 - 214 NaN NaN 150807.1 NaN 17370 4199 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21572 87.455 NaN 309950 35 0 61916 0.264 + 25207 SAPCAPFF 8 50 420.19141298240754 838.3682730316151 2 420.19140625 MULTI HCD FTMS 0 0 0 21567 273151.40625 0.670725853959037 3 -0.08461761474609375 5 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 13.539 0 0 1.6149 0 0 570.1903383165745 152.07134424381096 722.2616825603855 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.6149 - 10 + NaN NaN 133198.4 NaN 17371 4199 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21573 87.459 NaN 112320 35 0 11714 0.261 + -1 KGLCRGMD 8 32 476.7208386660537 951.4271243989074 2 476.7208557128906 MULTI HCD FTMS 0 0 0 21567 84401.7578125 0.9016770048441428 -3 0.0732574462890625 6 Carbamidomethyl (C),Oxidation (M) _KGLC(Carbamidomethyl (C))RGM(Oxidation (M))D_ REV__DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;REV__ENSG00000039139|ENST00000265104|DNAH5;REV__ENSG00000124721|ENST00000327475|DNAH8;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__nc|ENSG00000124721|Q96JB1|DNAH8 2.302733041254933 0.5385759549224092 2 H 1 -1 6.9897 0 0 0.73465 0 0 203.04334458868692 608.3037616221392 811.347106210826 0 0 0 0 0 0 0 0 0 H 0.73465 - 11 + NaN NaN 102701.1 NaN 17372 4199 21567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21575 87.464 NaN 853520 35 0 25977 0.327 -1 0 111 567.3303563093277 1132.6461596854554 2 567.3302612304688 MULTI HCD FTMS 0 0 0 21574 768099.1875 0.18320065125622628 44 -1.1510772705078125 1 NaN NaN 2 {[HG]|PP}NGH{[ES]|[DT]|[{I|L}C]}K 8 -1 19.104 0 0 1.6867 0 0 0 283.1180569656081 283.1180569656081 2.892587542690922 0 0 0 0 1.5994850021680094 0 0.5 0 {[HG]|PP}NGH{[ES]|[DT]|[{I|L}C]}K 1.6867 - 487 + NaN NaN 221324.8 NaN 17373 4200 21574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21576 87.468 NaN 403070 35 0 102340 0.261 + 5835 FPDASFQVVL 10 55 561.7952787985263 1121.5760046638525 2 561.7953491210938 MULTI HCD FTMS 0 0 0 21574 405667.28125 0.30158044672558193 18 -0.48836517333984375 2 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 23.789781309258295 0.28859042913526417 2 C(Carbamidomethyl (C)){M(Oxidation (M))|F}QVV{I|L} 6 5 53.365 0 0 4.758 0 0 357.18977553535314 0 357.18977553535314 0 51.77108148272637 0 0 0 1.8494850021680094 0 0 0 C(Carbamidomethyl (C)){M(Oxidation (M))|F}QVV{I|L} 4.758 - 85 NaN NaN 146313.5 NaN 17374 4200 21574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21577 87.473 NaN 117420 35 0 6706.3 0.261 + 23770 RRLASRADGPG 11 58 578.3207524131933 1154.6269518931865 2 578.3206176757812 MULTI HCD FTMS 0 0 0 21574 72015.53125 0.19805972550579423 37 -1.00775146484375 3 Unmodified _RRLASRADGPG_ ENST00000434837.7_1_6:37664592-37664970:-|nuORF 1.3295316138638542 0.4130897924953357 2 K 1 11 2.4743 0 0 0.21429 0 0 806.4513670316616 217.05405603580314 1023.5054230674647 0 0 0 0 0 0 0 0 0 K 0.21429 - 17 + NaN NaN 104774.2 NaN 17375 4200 21574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21578 87.476 NaN 60440 35 0 15178 0.263 -1 FMVMLFYQDF 10 28 452.8704162373062 NaN 0 452.8806457519531 PEAK HCD FTMS 0 0 0 21574 8322 0.25207341587122867 11 -0.283294677734375 4 Oxidation (M) _FMVM(Oxidation (M))LFYQDF_ ENST00000396821.7_1_22:38880557-38880716:-|nuORF 0.776531954647913 0.3395196853010637 2 V 1 -1 0.48455 0 0 0.053617 0 0 675.7265369650437 125.90688501529532 801.633421980339 0 0 0 0 0 0 0 0 0 V 0.053617 + + 1 + NaN NaN 99177 NaN 17376 4200 21574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21579 87.479 NaN 133250 35 0 10261 0.261 + 29037 TYFDLWIML 9 43 601.3037878180522 1200.5930227029044 2 601.8063354492188 MULTI HCD FTMS 0 0 0 21574 28310.857421875 0.3277738270981388 16 -0.42877197265625 5 Unmodified _TYFDLWIML_ REV__ENST00000332995.11_1_6:13287586-13287817:+|nuORF 21.74664581756881 0.17247014374749275 2 [YV]{I|L}[MD]W 6 -1 42.14 0 0 3.5099 0 0 0 390.20185266666255 390.20185266666255 34.23516269895728 0 0 0 0 1.4247425010840047 1.6989700043360187 0.4247425010840047 0 [YV]{I|L}[MD]W 3.5099 - 27 + NaN NaN 103292.5 NaN 17377 4200 21574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21580 87.483 NaN 113200 35 0 26797 0.261 + 11345 IYNGFSSVLQF 11 44 637.8244513633175 1273.634349793435 2 637.8246459960938 MULTI HCD FTMS 0 0 0 21574 14783.83203125 0.13363872546741726 -4 0.0968780517578125 6 Unmodified _IYNGFSSVLQF_ ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF 27.088373467376528 0.22106052561220446 2 S{[MG]|[TS]}{I|L}Q{M(Oxidation (M))|F} 6 6 45.718 0 0 3.5896 0 0 592.3219471662125 0 592.3219471662125 0 45.718421963928435 0 0 0 1.4247425010840047 0 0.4247425010840047 0.3807196863200844 S{[MG]|[TS]}{I|L}Q{M(Oxidation (M))|F} 3.5896 - 64 NaN NaN 103923.6 NaN 17378 4200 21574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21582 87.488 NaN 304740 35 0 15489 0.327 -1 0 76 509.30615105361977 1016.5977491740396 2 509.3060607910156 MULTI HCD FTMS 0 0 0 21581 214185.0625 0.8848759881378274 3 -0.0813446044921875 1 NaN NaN 2 E 1 -1 6.5938 0 0 0.64861 0 0 667.4312868101355 217.1079043024047 884.5391911125402 0 0 0 0 0 0.5 0 0 0 E 0.64861 - 66 + NaN NaN 168976.6 NaN 17379 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21583 87.492 NaN 248830 35 0 9855 0.261 + 14669 LGSLWRRPPL 10 82 597.8563794416392 NaN 0 597.856201171875 PEAK HCD FTMS 0 0 0 21581 201567.953125 0.4460712387616429 -2 0.04769134521484375 2 Unmodified _LGSLWRRPPL_ REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF 6.2057823575117 0.3348729994311477 2 E 1 -1 3.9794 0 0 0.33337 0 0 734.4780654244909 327.14487634830317 1061.622941772794 0 0 0 0 0 0 0 0 0 E 0.33337 - 31 + NaN NaN 146547.7 NaN 17380 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21584 87.496 NaN 284860 35 0 36678 0.261 + 16974 LYIENQFFI 9 58 593.8107380759712 1185.6069232187424 2 593.810791015625 MULTI HCD FTMS 0 0 0 21581 101468.6015625 0.05164178245872882 14 -0.3748779296875 3 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 66.45667989310934 0.010234776021261575 2 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 74.534 0 0 6.2866 6.2866 89.027 0 0 0 11.358950636170292 56.02894215370371 11.358950636170292 9.208187539523749 0 2.138210492164445 1.154901959985743 0 0.7614393726401688 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[YV][VG][DV]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]AA[DV]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 6.2866;5.5099;5.5099;4.0947;4.0828;3.7546 +;-;-;-;-;- + 333 NaN NaN 157968.1 NaN 17381 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21585 87.499 NaN 782580 35 0 94957 0.261 + 27260 SYPFTFEAF 9 86 554.7530722381036 1107.4915915430072 2 554.7532348632812 MULTI HCD FTMS 0 0 0 21581 241739.890625 0.14942538937797573 -5 0.12094879150390625 4 Unmodified _SYPFTFEAF_ ENSG00000011143|ENST00000393119|MKS1;nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1 123.45060196383646 0.0010021686353097689 2 [YT]T{M(Oxidation (M))|F}TEEA 8 4 94.479 0 0 8.5309 0 0 0 162.0583936364341 162.0583936364341 67.01356061446829 0 0 0 0 1.9247425010840047 2 2.4876954943324545 0 [YT]T{M(Oxidation (M))|F}TEEA 8.5309 - 1536 NaN NaN 227215 NaN 17382 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21586 87.503 NaN 149380 35 0 12509 0.261 + 32959 YALLYSQEL 9 58 550.2869909192423 1098.5594289052844 2 550.2871704101562 MULTI HCD FTMS 0 0 0 21581 71877.1640625 0.574565380917572 5 -0.11736297607421875 5 Unmodified _YALLYSQEL_ ENST00000592495.1_1_19:11959591-11959708:+|nuORF 43.85829265575387 0.04763305254408404 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[W{I|L}]S{M(Oxidation (M))|F} 8 5 52.855 0 0 4.8113 0 0 0 128.07124466139695 128.07124466139695 31.88547520912806 0 0 0 0 1.4247425010840047 1.6989700043360187 0.8252574989159953 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[W{I|L}]S{M(Oxidation (M))|F} 4.8113 - 318 NaN NaN 110733.9 NaN 17383 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21587 87.506 NaN 176010 35 0 18269 0.261 + -1 DIRQFLSKVF 10 48 647.8611144023286 NaN 0 647.8605346679688 PEAK HCD FTMS 0 0 0 21581 19195.033203125 0.4729640425635332 -4 0.10753631591796875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))DIRQFLSKVF_ REV__ENST00000429442.6_1_8:135602540-135612746:-|nuORF 8.155526934196011 0.33320428830121973 2 V 1 -1 11.99 0 0 0.92677 0 0 165.0783449748406 1026.537392081078 1191.6157370559185 0 0 0 0 0 0.5 0 0 0 V 0.92677 + + 8 + NaN NaN 124208.9 NaN 17384 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21588 87.509 NaN 46343 35 0 5265.9 0.261 -1 MFWMCDVYM 9 32 641.7424926757812 NaN 0 641.7424926757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _MFWMC(Carbamidomethyl (C))DVYM_ ENST00000369603.9_1_10:112053154-112053253:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93354.2 NaN 17385 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21589 87.513 NaN 177690 35 0 38938 0.263 -1 VAMLLEHY 8 31 496.2478863137603 NaN 0 496.2482604980469 PEAK HCD FTMS 0 0 0 21581 14108.59765625 0.31404766883709445 18 -0.494110107421875 8 Oxidation (M) _VAM(Oxidation (M))LLEHY_ ENSG00000137842|ENST00000260403|TMEM62;ENST00000570109.1_1_15:43426051-43427957:+|nuORF 2.577480529830294 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.70569 0 0 99.06914447015386 789.3216095948538 888.3907540650077 0 0 0 0 0 0 0 0 0 V 0.70569 + + 1 + NaN NaN 122999.8 NaN 17386 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21590 87.516 NaN 132060 35 0 9530.3 0.261 + 20882 PIQGKPEEL 9 49 505.7812517314324 1009.5479505296648 2 505.7813720703125 MULTI HCD FTMS 0 0 0 21581 18913.134765625 0.3452625050772194 5 -0.11736297607421875 9 Unmodified _PIQGKPEEL_ REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.5338 0 0 844.4695488956789 0 844.4695488956789 0 7.068174985992782 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5338 - 49 + NaN NaN 111779.7 NaN 17387 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21591 87.519 NaN 87857 35 0 5676.9 0.261 + 3409 EFAKSIPSF 9 51 513.2680864515853 NaN 0 513.2680053710938 PEAK HCD FTMS 0 0 0 21581 7048.1884765625 0.4728851620158687 -2 0.04769134521484375 10 Unmodified _EFAKSIPSF_ ENSG00000112033|ENST00000360694|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;nc|ENSG00000112033|Q03181-4|PPARD 7.289230182591677 0.2599242500475609 2 {M(Oxidation (M))|F}AN 3 7 8.8123 0 0 0.86014 0 0 530.3059350107893 159.04212366275627 689.3480586735456 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AN 0.86014 - 19 + NaN NaN 116476.5 NaN 17388 4201 21581 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21593 87.525 NaN 329790 35 0 39353 0.327 -1 IVYVCSSLL 9 64 527.2845416355899 1052.5545303379797 2 527.3026733398438 MULTI HCD FTMS 0 0 0 21592 26309.921875 0.53934337318187 -3 0.08461761474609375 1 Carbamidomethyl (C) _IVYVC(Carbamidomethyl (C))SSLL_ ENSG00000165349|ENST00000374299|SLC7A3 30.224811164608877 0.11021837014094292 2 [{I|L}V]Y[NS]VV{I|L}{M(Oxidation (M))|F} 9 -1 + 53.171 0 0 5.0516 5.0516 82.722 0 0 0 6.981749205591754 18.222281142179213 6.981749205591754 0.7268250975604218 0 0.3252574989159953 1.3979400086720375 0.3252574989159953 0.7614393726401688 [{I|L}V]Y[NS]VV{I|L}{M(Oxidation (M))|F};[{I|L}V]YT[QA]V{I|L}{M(Oxidation (M))|F};[{I|L}V]Y[NS]VV{M(Oxidation (M))|F}{I|L};[{I|L}V]YT[QA]V{M(Oxidation (M))|F}{I|L};[YV]T{[NV]|[RG]}VV{I|L}{M(Oxidation (M))|F};[{I|L}V]Y[MN]T{[TV]|[{I|L}S]}{I|L};[YV]T{I|L}[QA]V{I|L}{M(Oxidation (M))|F};[YV]{I|L}[NS]VV{I|L}{M(Oxidation (M))|F};[YV]{I|L}T[QA]V{I|L}{M(Oxidation (M))|F};[YV]T{[NV]|[RG]}VV{M(Oxidation (M))|F}{I|L} 5.0516;4.9825;4.7129;4.6438;3.7235;3.6925;3.6544;3.5562;3.4871;3.3848 -;-;-;-;-;-;-;-;-;- 902 NaN NaN 136194 NaN 17389 4202 21592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21594 87.529 NaN 310080 35 0 26391 0.261 + 31447 VYDELFYTL 9 66 581.7865628901865 1161.5585728471729 2 581.7867431640625 MULTI HCD FTMS 0 0 0 21592 58532.453125 0.29371560320700113 5 -0.11991119384765625 2 Unmodified _VYDELFYTL_ ENSG00000103966|ENST00000220325|EHD4 22.736283301280096 0.1639198954644489 2 G{M(Oxidation (M))|F}YT{I|L} 5 5 37.607 0 0 3.2376 0 0 562.2780018537125 0 562.2780018537125 0 25.668563304579024 0 0 0 1.3494850021680094 0 0 0 G{M(Oxidation (M))|F}YT{I|L} 3.2376 - 119 NaN NaN 139532 NaN 17390 4202 21592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21595 87.534 NaN 75405 35 0 12394 0.261 + 34092 YNLVLMLQLH 10 46 622.3474855429057 1242.6804181526113 2 622.3474731445312 MULTI HCD FTMS 0 0 0 21592 23259.892578125 0.21343025440589758 -16 0.38610076904296875 3 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 2 [YN]{I|L} 3 -1 27.447 0 0 2.2087 0 0 0 849.4678991919269 849.4678991919269 16.989700043360187 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 2.2087 + + 51 NaN NaN 94172 NaN 17391 4202 21592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21597 87.539 NaN 277970 35 0 66794 0.327 + 1465 AYSTFPPEGVF 11 64 607.7901649923604 1213.5657770515206 2 607.79052734375 MULTI HCD FTMS 0 0 0 21596 176827.796875 0.30322889400264275 18 -0.4998016357421875 1 Unmodified _AYSTFPPEGVF_ ENSG00000071967|ENST00000321348|CYBRD1;nc|ENSG00000071967|Q53TN4-3|CYBRD1 12.240655878213236 0.35042917576941135 2 WV{M(Oxidation (M))|F} 3 9 36.198 0 0 2.9828 0 0 763.3542795248616 0 763.3542795248616 0 23.93553046518285 0 0 0 1 0 0 0 WV{M(Oxidation (M))|F} 2.9828 - 91 NaN NaN 124560.3 NaN 17392 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21598 87.543 NaN 346520 35 0 87093 0.261 + 19327 NNPRKLQKQI 10 89 619.8695229941743 1237.7244930551485 2 619.8692626953125 MULTI HCD FTMS 0 0 0 21596 219190.4375 0.5647896613473491 28 -0.77166748046875 2 Unmodified _NNPRKLQKQI_ ENSG00000173093|ENST00000308208|CCDC63;ENST00000550317.1_1_12:111284592-111319020:+|nuORF;nc|ENSG00000173093|Q8NA47-2|CCDC63 3.5964929083625545 0.45626689593999237 2 W 1 10 12.764 0 0 1.0313 0 0 1033.6350287990922 0 1033.6350287990922 0 6.5663222604049665 0 0 0 0 0 0 0 W 1.0313 - 66 + NaN NaN 137364 NaN 17393 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21599 87.547 NaN 254560 35 0 15270 0.261 -1 RCMADENCF 9 59 581.2087091547282 1160.4028653762564 2 581.2086791992188 MULTI HCD FTMS 0 0 0 21596 76759.453125 0.4620800088190729 -3 0.0756072998046875 3 Carbamidomethyl (C),Oxidation (M) _RC(Carbamidomethyl (C))M(Oxidation (M))ADENCF_ ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B 1.6526216038709556 0.33848895094777925 2 Y{M(Oxidation (M))|F}[HS]Y[{I|L}T] 7 -1 15.986 0 0 1.3776 0 0 230.98942651082513 0 230.98942651082513 0 15.016894462103991 0 0 0 0 0 0 0 Y{M(Oxidation (M))|F}[HS]Y[{I|L}T] 1.3776 - 65 + NaN NaN 125258.6 NaN 17394 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21600 87.551 NaN 317730 35 0 40705 0.261 -1 TPFLYDLVM 9 75 557.7782863812777 1113.5420198293552 2 557.7782592773438 MULTI HCD FTMS 0 0 0 21596 91649.4609375 0.07359123077841853 42 -1.1045379638671875 4 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 21.74664581756881 0.17247014374749275 2 PRS{I|L}AC(Carbamidomethyl (C))V{M(Oxidation (M))|F} 8 -1 37.759 0 0 3.3909 0 0 165.0789509503922 0 165.0789509503922 0 23.947023733780277 0 0 0 1 0 0.3494850021680094 0 PRS{I|L}AC(Carbamidomethyl (C))V{M(Oxidation (M))|F} 3.3909 - 764 NaN NaN 149602.3 NaN 17395 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21601 87.554 NaN 186450 35 0 13417 0.261 + 14282 LCYARIKSFV 10 73 600.3339972575632 1198.6534415819262 2 600.3341064453125 MULTI HCD FTMS 0 0 0 21596 82666.0078125 0.16378674906757829 -20 0.4865570068359375 5 Unmodified _LCYARIKSFV_ REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF 3.5964929083625545 0.45626689593999237 2 E 1 -1 4.6041 0 0 0.38411 0 0 501.31306179852623 565.2896822565061 1066.6027440550324 0 0 0 0 0 0 0 0 0 E 0.38411 - 38 + NaN NaN 119469.7 NaN 17396 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21602 87.557 NaN 65828 35 0 10360 0.264 -1 0 43 456.77235803652934 911.5301631398587 2 456.7724914550781 MULTI HCD FTMS 0 0 0 21596 27884.712890625 0.5551039605889051 5 -0.1317291259765625 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 114083.8 NaN 17397 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21603 87.561 NaN 265260 35 0 24279 0.261 + 26706 SYAYILEAF 9 49 538.7686983430062 1075.5228437528124 2 538.7693481445312 MULTI HCD FTMS 0 0 0 21596 30307.162109375 0.12161187786763036 -4 0.0992279052734375 7 Unmodified _SYAYILEAF_ ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000155465|ENST00000674313|SLC7A7 52.268347100219714 0.028397529699942435 2 {I|L}{I|L}EA{M(Oxidation (M))|F} 5 4 52.154 0 0 4.8491 0 0 484.1970321681902 0 484.1970321681902 0 28.96591250700361 0 0 0 2.1747425010840047 0 0.3494850021680094 0 + {I|L}{I|L}EA{M(Oxidation (M))|F} 4.8491 + + 71 + NaN NaN 144697.5 NaN 17398 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21604 87.564 NaN 81388 35 0 4700.4 0.261 -1 GYKMKKRV 8 45 513.3008277927878 NaN 0 513.2830810546875 PEAK HCD FTMS 0 0 0 21596 7270.90234375 1 0 0 8 Oxidation (M) _GYKM(Oxidation (M))KKRV_ ENSG00000162542|ENST00000294543|TMCO4 2.8892196856762586 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.6822 0 0 677.4405705252256 273.08759485416255 950.5281653793882 0 0 0 0 0 0 0 0 0 A 0.6822 - 4 + NaN NaN 115185.1 NaN 17399 4203 21596 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21606 87.569 NaN 593800 35 0 51910 0.327 + 8221 GRLTRRPSF 9 95 545.3169429313647 1088.6193329295293 2 545.3169555664062 MULTI HCD FTMS 0 0 0 21605 131242.703125 0.3132749510517971 1 -0.02617645263671875 1 Unmodified _GRLTRRPSF_ ENSG00000275832|ENST00000622683|ARHGAP23 7.289230182591677 0.29575926068275815 2 VS{M(Oxidation (M))|F} 3 7 25.317 0 0 2.3256 0 0 737.4402629707312 0 737.4402629707312 0 -0.4060751224076853 -0.4060751224076853 0 0 0 0 0.2614393726401688 0 VS{M(Oxidation (M))|F} 2.3256 - 785 + NaN NaN 185533.7 NaN 17400 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21607 87.573 NaN 407860 35 0 77604 0.261 + 5485 FIWEYDPTL 9 70 592.2873014144419 NaN 0 592.3052978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FIWEYDPTL_ ENSG00000134533|ENST00000256953|RERG 20.453626601364224 0.18435338882370536 2 T{M(Oxidation (M))|F}A[EP]P{I|L} 7 6 16.955 0 0 1.4338 0 0 165.04339526621965 259.1084516256266 424.1518468918463 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}A[EP]P{I|L} 1.4338 - 218 + NaN NaN 156453.3 NaN 17401 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21608 87.577 NaN 231130 35 0 29586 0.262 + 4136 ETILTPLLT 9 39 500.79978276562593 NaN 0 500.7896423339844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ETILTPLLT_ ENST00000439492.1_1_22:24269897-24270236:+|nuORF 4.3292370932331545 0.2742679634796037 2 T 1 8 6.9897 0 0 0.69926 0 0 131.1152018714766 764.399440969608 895.5146428410847 0 0 0 0 0 0 0 0 0 + T 0.69926 + + 5 + NaN NaN 120323.4 NaN 17402 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21609 87.58 NaN 44761 35 0 5444 0.261 -1 HMPSPMGL 8 33 451.1990122405181 900.3834715478362 2 451.1998596191406 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Oxidation (M) _HM(Oxidation (M))PSPM(Oxidation (M))GL_ ENSG00000282815|ENST00000695840|TEX13C 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 0.9691 0 0 0.10763 0 0 425.0857248210768 359.18415247135005 784.2698772924268 0 0 0 0 0 0 0 0 0 {I|L} 0.10763 + + 1 + NaN NaN 100042.4 NaN 17403 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21610 87.583 NaN 193100 35 0 24251 0.261 -1 NAAMVFEFL 9 48 529.2542629116602 1056.4939728901204 2 529.2547607421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _NAAM(Oxidation (M))VFEFL_ ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1 32.78568957990786 0.09846250359632436 2 V{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5 -1 54.993 0 0 5.2052 0 0 403.15048031375164 0 403.15048031375164 0 50.38872836444014 0 0 0 1.805462187404089 0 0.3494850021680094 0 V{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5.2052 - 66 + NaN NaN 118033.9 NaN 17404 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21611 87.587 NaN 54564 35 0 22152 0.261 + -1 KREECMGG 8 23 483.71020946418435 NaN 0 483.7105407714844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _KREEC(Carbamidomethyl (C))MGG_ REV__ENSG00000120451|ENST00000265909|SNX19;REV__nc|ENSG00000120451|Q92543-2|SNX19 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91986 NaN 17405 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21612 87.59 NaN 98786 35 0 7252.4 0.262 + 14913 LLAWEDPTF 9 48 546.2739486469965 1090.5333443607929 2 547.7756958007812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _LLAWEDPTF_ REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P;REV__nc|ENSG00000214189|Q6ZQV5|ZNF788P 7.910154910731844 0.2910521888787154 2 D[TP]{M(Oxidation (M))|F} 4 -1 20.005 0 0 1.8344 0 0 612.3256550070804 0 612.3256550070804 0 3.8071968632008435 0 0 0 0 0 0.3807196863200844 0 D[TP]{M(Oxidation (M))|F} 1.8344 + + 42 + NaN NaN 108852.8 NaN 17406 4204 21605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21614 87.595 NaN 1172600 35 0 58484 0.327 -1 0 109 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 21613 1552516.5 0.30982895727449206 -19 0.456695556640625 1 NaN NaN 2 Q 1 -1 9.3361 0 0 0.79343 0 0 634.3785721073756 411.2235506647094 1045.602122772085 0 0 0 0 0 0.4247425010840047 0 0 0.3494850021680094 Q 0.79343 - 273 + NaN NaN 266404.7 NaN 17407 4205 21613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21615 87.599 NaN 641210 35 0 32513 0.261 -1 0 95 611.3561023151733 1220.6976516971465 2 611.3563232421875 MULTI HCD FTMS 0 0 0 21613 604857 0.4214390022702991 -9 0.2284698486328125 2 NaN NaN 2 T{[SA]|[TG]} 3 -1 12.121 0 0 0.99299 0 0 943.5485707013687 0 943.5485707013687 0 4.022496736287453 0 0 0 0.3807196863200844 0 0.3252574989159953 0 T{[SA]|[TG]} 0.99299 - 180 NaN NaN 208601.7 NaN 17408 4205 21613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21617 87.604 NaN 917480 35 0 23178 0.326 -1 0 112 567.3303563093277 1132.6461596854554 2 567.3301391601562 MULTI HCD FTMS 0 0 0 21616 794571.5625 0.1895146227057782 50 -1.3136672973632812 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2894 0 0 967.5674681344773 0 967.5674681344773 0 2.3721186938815464 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2894 - 636 + NaN NaN 236261.3 NaN 17409 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21618 87.609 NaN 433820 35 0 15399 0.261 -1 0 99 575.8430938105198 1149.6716346878395 2 575.8430786132812 MULTI HCD FTMS 0 0 0 21616 343406.03125 1 0 0 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.2159 0 0 984.5936908175255 0 984.5936908175255 0 2.984550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2159 - 400 + NaN NaN 159642.7 NaN 17410 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21619 87.613 NaN 514390 35 0 85211 0.261 + 8359 GYISSAFLF 9 60 502.7581576412349 1003.5017623492698 2 502.75811767578125 MULTI HCD FTMS 0 0 0 21616 158525.359375 0.9526230359870339 1 -0.0394744873046875 3 Unmodified _GYISSAFLF_ ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131471|Q16853-2|AOC3 104.79918948944588 0.003791450360204016 2 SSA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6 3 62.986 0 0 6.2767 0 0 333.1685963361344 0 333.1685963361344 0 45.53904087461092 0 0 0 2.2302046884880937 0 1.4476212463643423 0 + SSA{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.2767 + + 127 NaN NaN 180749.7 NaN 17411 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21620 87.616 NaN 1060800 35 0 204190 0.261 + 12789 KYDVLFALF 9 81 558.3103858889295 1114.606218844659 2 558.3106079101562 MULTI HCD FTMS 0 0 0 21616 556413.75 0.1690827109755336 -4 0.08043670654296875 4 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 43.77239144664712 0.04802738721622131 2 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 5 + 76.674 0 0 6.879 6.879 87.222 0 0 0 10.412800692342117 42.36658195193321 10.412800692342117 4.247425010840047 0 2.75 1.154901959985743 0 0 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV][SG]V{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[CA]|SS}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.879;6.4979;5.8428;5.7323;5.6848;5.4222;5.393;5.3512;4.8529;4.6961 -;-;-;-;-;-;-;-;-;- 931 NaN NaN 249383.4 NaN 17412 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21621 87.619 NaN 213780 35 0 27030 0.261 + -1 MSLGTFKSIQM 11 59 637.8118013729427 NaN 0 637.8245849609375 PEAK HCD FTMS 0 0 0 21616 16078.662109375 0.6633267497075884 -2 0.03601837158203125 5 2 Oxidation (M) _M(Oxidation (M))SLGTFKSIQM(Oxidation (M))_ REV__ENSG00000182463|ENST00000371497|TSHZ2;REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2 26.268140514670165 0.2078196763510663 2 Q{I|L}VS[YQ]P 7 -1 44.174 0 0 3.4684 0 0 165.0556473935274 290.11493860416255 455.17058599768995 0 0 0 0 0 0 0 1.1861818737241734 1.5356668758921828 Q{I|L}VS[YQ]P 3.4684 - 218 + NaN NaN 136454.9 NaN 17413 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21622 87.623 NaN 181930 35 0 14763 0.261 + 13664 KYPENFFLL 9 51 585.8136157652201 NaN 0 585.8138427734375 PEAK HCD FTMS 0 0 0 21616 131139.421875 1 0 0 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 29.84058131909904 0.12134613108984595 2 {I|L}{M(Oxidation (M))|F} 2 8 20.969 0 0 1.7928 0 0 131.0968109029389 775.3390139704507 906.4358248733895 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7928 - 17 + NaN NaN 124574.5 NaN 17414 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21623 87.626 NaN 166440 35 0 43740 0.264 -1 0 37 404.12117921602913 806.2278054988583 2 404.1211242675781 MULTI HCD FTMS 0 0 0 21616 76603.71875 1 0 0 7 NaN NaN 2 E 1 -1 0.3786 0 0 0.04696 0 0 373.0678761549114 301.1013582818969 674.1692344368083 0 0 0 0 0 0 0 0 0 E 0.04696 - 5 + NaN NaN 116134.5 NaN 17415 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21624 87.629 NaN 246110 35 0 29975 0.261 + 5014 FCQAHALY 8 44 476.7208386660537 951.4271243989074 2 476.72088623046875 MULTI HCD FTMS 0 0 0 21616 56942.45703125 0.6083250566707953 3 -0.08565521240234375 8 Unmodified _FCQAHALY_ REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1 0.7936320650641473 0.540814922690045 2 H 1 -1 6.9897 0 0 0.73465 0 0 203.04250426749246 608.302290499584 811.3447947670766 0 0 0 0 0 0 0 0 0 H 0.73465 + + 5 + NaN NaN 134478.2 NaN 17416 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21625 87.633 NaN 138610 35 0 6489 0.261 + 32808 WTIHAKPGFV 10 57 578.3205678259714 1154.6265827187426 2 578.3212280273438 MULTI HCD FTMS 0 0 0 21616 69360.296875 1 0 0 9 Unmodified _WTIHAKPGFV_ ENSG00000149090|ENST00000619888|PAMR1;ENST00000534803.1_1_11:35474916-35547133:-|nuORF;nc|ENSG00000149090|Q6UXH9-2|PAMR1 3.5964929083625545 0.45626689593999237 2 A 1 9 3.9794 0 0 0.34465 0 0 165.13017061314093 915.4409273736936 1080.5710979868345 0 0 0 0 0 0 0 0 0 + A 0.34465 + + 4 + NaN NaN 109221.3 NaN 17417 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21626 87.636 NaN 174150 35 0 11144 0.261 + 16261 LQFLYSICL 9 74 550.2977480161812 NaN 0 550.2963256835938 PEAK HCD FTMS 0 0 0 21616 20414.4140625 0.5504925485701766 -4 0.08043670654296875 10 Unmodified _LQFLYSICL_ nc|ENSG00000144445|A0AUZ9-3|KANSL1L 24.020572477871973 0.16041128140741606 2 {I|L}YQ 3 7 23.188 0 0 2.1107 0 0 165.07967288333015 526.2651461236936 691.3448190070237 0 0 0 0 0 1 0 0 0 {I|L}YQ 2.1107 - 310 + NaN NaN 135665.5 NaN 17418 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21627 87.639 NaN 87672 35 0 11847 0.261 + 10113 IFIPSSIAF 9 41 497.784007340094 NaN 0 497.7835388183594 PEAK HCD FTMS 0 0 0 21616 24611.345703125 0.8080489207511123 -3 0.065826416015625 11 Unmodified _IFIPSSIAF_ ENSG00000198189|ENST00000358290|HSD17B11;ENST00000502576.5_1_4:88258430-88295551:-|nuORF;ENST00000508163.1_1_4:88239551-88261757:-|nuORF 23.1484247019978 0.16626532474190622 2 A 1 8 15.044 0 0 1.5142 0 0 165.07654236156606 754.4124849908811 919.4890273524472 0 0 0 0 0 0.805462187404089 0 0 0 + A 1.5142 + + 11 + NaN NaN 111906.1 NaN 17419 4206 21616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21629 87.644 NaN 1060600 35 0 184370 0.326 + 9904 ICDKCGQG 8 72 412.1753730997742 822.3361932663485 2 412.17572021484375 MULTI HCD FTMS 0 0 0 21628 1196722.75 0.1793272650631964 -3 0.07549285888671875 1 Unmodified _ICDKCGQG_ ENSG00000143033|ENST00000370298|MTF2;ENST00000471953.5_1_1:93545083-93592837:+|nuORF;nc|ENSG00000143033|Q9Y483-3|MTF2;nc|ENSG00000143033|Q9Y483-4|MTF2 2.0597508629832335 0.5389364538378849 2 {I|L} 1 7 11.237 0 0 1.3665 0 0 155.0942816102749 551.1350714178254 706.2293530281004 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 1.3665 + + 17 + NaN NaN 274211.8 NaN 17420 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21630 87.649 NaN 816130 35 0 48221 0.261 -1 0 108 597.8563626585645 1193.698172383929 2 597.8565063476562 MULTI HCD FTMS 0 0 0 21628 707653.75 0.24857982425272984 -17 0.42104339599609375 2 NaN NaN 2 D 1 -1 10.159 0 0 0.85103 0 0 61.05309694079467 1014.5702696624701 1075.6233666032647 0 0 0 0 0 0.3807196863200844 0 0.3252574989159953 0 D 0.85103 - 209 + NaN NaN 228913.7 NaN 17421 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21631 87.653 NaN 684700 35 0 99435 0.261 + 5836 FPDASFQVVL 10 87 561.7952787985263 1121.5760046638525 2 561.79541015625 MULTI HCD FTMS 0 0 0 21628 181221.671875 0.13472349209927645 25 -0.6992340087890625 3 Unmodified _FPDASFQVVL_ ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13 19.361941925380144 0.3300069447713393 2 QVV{I|L} 4 6 36.714 0 0 3.2735 0 0 664.2878285138687 0 664.2878285138687 0 8.230596080971182 0 0 0 1.079689690656103 0 0 0 + QVV{I|L} 3.2735 + + 910 NaN NaN 200236.3 NaN 17422 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21632 87.656 NaN 166840 35 0 43772 0.264 + 22453 QQQHGNGA 8 49 420.19141298240754 838.3682730316151 2 420.19140625 MULTI HCD FTMS 0 0 0 21628 109716.359375 0.26940955510849934 11 -0.30745697021484375 4 Unmodified _QQQHGNGA_ ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-6|SP3 2.577480529830294 0.5381683276125971 2 {I|L} 1 8 11.906 0 0 1.4202 0 0 570.1896669298558 152.07126794986564 722.2609348797214 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L} 1.4202 - 12 + NaN NaN 108522.3 NaN 17423 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21633 87.659 NaN 225830 35 0 27006 0.261 + 23080 REKKEKLS 8 65 509.30615105361977 1016.5977491740396 2 509.3060607910156 MULTI HCD FTMS 0 0 0 21628 103289.0859375 0.4267245853468343 9 -0.24786376953125 5 Unmodified _REKKEKLS_ ENST00000578895.5_1_17:80405330-80405492:-|nuORF 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F}{I|L}M{[TV]|[{I|L}S]} 5 6 23.64 0 0 2.3254 0 0 407.2807458554833 0 407.2807458554833 0 4.71217778224478 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}{I|L}M{[TV]|[{I|L}S]} 2.3254 - 68 + NaN NaN 141984.5 NaN 17424 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21634 87.663 NaN 321820 35 0 154220 0.261 -1 0 48 606.3694787228364 1210.7244045124728 2 606.3700561523438 MULTI HCD FTMS 0 0 0 21628 106042.3671875 0.14290439514864964 -17 0.42104339599609375 6 NaN NaN 2 P 1 -1 6.9897 0 0 0.57732 0 0 666.4146033423541 444.2277926080688 1110.642395950423 0 0 0 0 0 0 0 0 0 P 0.57732 - 6 + NaN NaN 155879 NaN 17425 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21635 87.666 NaN 275930 35 0 37327 0.261 -1 LMRHFLLGLT 10 62 608.8474289333109 1215.6803049334217 2 608.8477783203125 MULTI HCD FTMS 0 0 0 21628 61434.4296875 0.2738436249681533 -17 0.42104339599609375 7 Oxidation (M) _LM(Oxidation (M))RHFLLGLT_ ENST00000488564.2_1_7:27881117-27881465:+|nuORF 3.5964929083625545 0.45626689593999237 2 AS{I|L}W 4 -1 13.633 0 0 1.1214 0 0 131.21655635202666 624.2102144830686 755.4267708350953 0 0 0 0 0 0 0 0.4247425010840047 0 AS{I|L}W 1.1214 - 19 + NaN NaN 131249.4 NaN 17426 4207 21628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21637 87.671 NaN 2289100 35 0 280500 0.326 + 27261 SYPFTFEAF 9 92 554.7530722381036 1107.4915915430072 2 554.7532348632812 MULTI HCD FTMS 0 0 0 21636 1322199.625 0.8172842028274104 2 -0.0594635009765625 1 Unmodified _SYPFTFEAF_ ENSG00000011143|ENST00000393119|MKS1;nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1 149.9946105101851 8.83195450578534E-06 2 {[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 9 0 + 100.73 0 0 9.0952 9.0952 90.557 0 0 0 4.005149978319906 6.183627031196721 4.005149978319906 4.005149978319906 0 3.1989700043360187 0 2.190614065464281 0 + + {[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F}T{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}P{M(Oxidation (M))|F}TE{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}TE{M(Oxidation (M))|F}A{M(Oxidation (M))|F};{[CP]|[EA]}{M(Oxidation (M))|F}T{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]A{M(Oxidation (M))|F}TE{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]AT{M(Oxidation (M))|F}{M(Oxidation (M))|F}EA{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PT{M(Oxidation (M))|F}E{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 9.0952;8.7336;8.5989;8.3322;8.2769;7.9705;7.9152;7.8358;7.7805;7.5138 +;-;-;-;-;-;-;-;-;- + 3847 NaN NaN 446801.5 NaN 17427 4208 21636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21638 87.675 NaN 126980 35 0 10454 0.261 + 7778 FYNPVTSLL 9 51 527.2845416355899 1052.5545303379797 2 527.30224609375 MULTI HCD FTMS 0 0 0 21636 34499.6875 0.7072304478277891 2 -0.0594635009765625 2 Unmodified _FYNPVTSLL_ ENSG00000165733|ENST00000374518|BMS1 13.042465956692817 0.2476723265019929 2 MV{I|L}{M(Oxidation (M))|F} 4 7 29.553 0 0 2.8077 0 0 544.2826014823141 0 544.2826014823141 0 1.8976493261708036 0 0 0 0 0 0 0 MV{I|L}{M(Oxidation (M))|F} 2.8077 - 231 + NaN NaN 120425.3 NaN 17428 4208 21636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21639 87.679 NaN 177320 35 0 33238 0.261 + 30852 VQNNVLLIF 9 44 530.3124850435481 1058.6104171538962 2 530.3138427734375 MULTI HCD FTMS 0 0 0 21636 60468.609375 1 0 0 3 Unmodified _VQNNVLLIF_ ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6 28.486842064014134 0.11819662193267319 2 {I|L}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 7 7 56.714 0 0 5.3574 0 0 165.07800670199225 0 165.07800670199225 0 47.25009480581832 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L}{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 5.3574 - 56 + NaN NaN 123469.1 NaN 17429 4208 21636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21640 87.682 NaN 76429 35 0 14291 0.261 + 32422 WAGRCCPL 8 38 453.2097420853751 NaN 0 453.2102966308594 PEAK HCD FTMS 0 0 0 21636 19018.310546875 0.5382258279194075 11 -0.31084442138671875 4 Unmodified _WAGRCCPL_ ENST00000354755.5_1_11:86085825-86086272:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92980.7 NaN 17430 4208 21636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21641 87.686 NaN 63213 35 0 4780.5 0.261 + 715 AQFIQQYAKGN 11 40 634.3270103332824 1266.6394677333647 2 634.3271484375 MULTI HCD FTMS 0 0 0 21636 25933.392578125 1 0 0 5 Unmodified _AQFIQQYAKGN_ REV__ENSG00000197816|ENST00000529487|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF;REV__ENST00000460482.6_1_9:100070037-100107975:+|nuORF;REV__ENST00000494917.6_1_9:100069637-100105846:+|nuORF;REV__ENST00000529787.2_1_9:100053158-100088872:+|nuORF;REV__nc|ENSG00000197816|Q9P1Z9|CCDC180 5.296884461304476 0.39569033063702824 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 96683.5 NaN 17431 4208 21636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21643 87.69 NaN 480170 35 0 63540 0.327 -1 0 103 619.8695358862443 1237.7245188392885 2 619.8695068359375 MULTI HCD FTMS 0 0 0 21642 318102.71875 0.5060986675149302 -15 0.371124267578125 1 NaN NaN 2 [Y{I|L}][VS]KS{M(Oxidation (M))|F}H 8 -1 16.132 0 0 1.3033 0 0 0 273.1842865243263 273.1842865243263 9.537881139012047 0 0 0 0 0 1.3010299956639813 0.4247425010840047 0 [Y{I|L}][VS]KS{M(Oxidation (M))|F}H 1.3033 - 188 NaN NaN 165044.3 NaN 17432 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21644 87.695 NaN 658740 35 0 85434 0.261 + 26707 SYAYILEAF 9 65 538.7686983430062 1075.5228437528124 2 538.7688598632812 MULTI HCD FTMS 0 0 0 21642 228148.484375 0.915478840195165 1 -0.03971099853515625 2 Unmodified _SYAYILEAF_ ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000155465|ENST00000674313|SLC7A7 103.74828524460852 0.00396301343438984 2 {[{M(Oxidation (M))|F}C]|[YS]}AY{I|L}{I|L}EA{M(Oxidation (M))|F} 9 0 + 73.387 0 0 6.8234 6.8234 95.054 0 0 0 4.894549897933871 65.94003155093382 4.894549897933871 73.38730649990076 0 2.805462187404089 0 1.2302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}AY{I|L}{I|L}EA{M(Oxidation (M))|F} 6.8234 + + 223 NaN NaN 194137 NaN 17433 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21645 87.699 NaN 231300 35 0 12178 0.261 + 14283 LCYARIKSFV 10 68 600.3339972575632 1198.6534415819262 2 600.3341064453125 MULTI HCD FTMS 0 0 0 21642 171547.015625 0.3398873218263144 -15 0.371124267578125 3 Unmodified _LCYARIKSFV_ REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF 3.5964929083625545 0.45626689593999237 2 Q 1 -1 6.9897 0 0 0.58313 0 0 546.3289919743075 521.2574556940061 1067.5864476683137 0 0 0 0 0 0 0 0 0 Q 0.58313 - 25 + NaN NaN 125565.6 NaN 17434 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21646 87.702 NaN 300800 35 0 105380 0.262 + 20986 PLLLHALLL 9 50 501.8391825319688 1001.6638121307376 2 501.8392028808594 MULTI HCD FTMS 0 0 0 21642 128813.3515625 0.8486087036990716 3 -0.0958099365234375 4 Unmodified _PLLLHALLL_ ENSG00000187135|ENST00000335523|VSTM2B 14.581692164780916 0.23437375358055648 2 A{I|L}{I|L}{I|L} 4 5 31.542 0 0 3.149 0 0 573.3624745099625 0 573.3624745099625 0 20.573193899842437 0 0 0 0.5 0 0 0 + A{I|L}{I|L}{I|L} 3.149 + + 40 NaN NaN 132697.3 NaN 17435 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21647 87.705 NaN 303940 35 0 22315 0.261 -1 CSVCSCQNGF 10 56 581.2087091547282 1160.4028653762564 2 581.208984375 MULTI HCD FTMS 0 0 0 21642 115110.5703125 0.6929477892260388 3 -0.0958099365234375 5 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))SVC(Carbamidomethyl (C))SCQNGF_ ENSG00000184613|ENST00000429094|NELL2;ENST00000547636.1_1_12:44915767-44917277:-|nuORF;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2;nc|ENSG00000184613|Q99435-4|NELL2 3.5964929083625545 0.45626689593999237 2 G{M(Oxidation (M))|F} 2 -1 25.217 0 0 2.1731 0 0 938.3034829073096 0 938.3034829073096 0 19.731975075880328 0 0 0 0.4247425010840047 0 0 0 G{M(Oxidation (M))|F} 2.1731 + + 8 + NaN NaN 131987.2 NaN 17436 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21648 87.709 NaN 426080 35 0 41883 0.261 -1 FYLMQIVEI 9 66 586.3060343375007 1170.5975157418013 2 586.3073120117188 MULTI HCD FTMS 0 0 0 21642 185210.21875 0.8374588122119468 -1 0.01975250244140625 6 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 47.748688679222035 0.03472022231463587 2 {I|L}VE{I|L} 4 -1 46.983 0 0 4.0136 0 0 698.3119984357437 0 698.3119984357437 0 35.33932200095428 0 0 0 1.274227503252014 0 0.3807196863200844 0 {I|L}VE{I|L} 4.0136 + + 395 NaN NaN 157299.6 NaN 17437 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21649 87.712 NaN 140160 35 0 11681 0.261 + 34093 YNLVLMLQLH 10 52 622.3474855429057 1242.6804181526113 2 622.3470458984375 MULTI HCD FTMS 0 0 0 21642 41465.0859375 0.38047913638801634 -10 0.25070953369140625 7 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 2 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 30.812 0 0 2.4795 0 0 0 162.15388322662798 162.15388322662798 23.822450201455187 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L}[MN]SE{I|L}{I|L} 2.4795 - 86 NaN NaN 107975.7 NaN 17438 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21650 87.715 NaN 325060 35 0 42856 0.261 + 8791 HIIRYLVCIS 10 82 608.8474289333109 1215.6803049334217 2 608.847900390625 MULTI HCD FTMS 0 0 0 21642 37528.0390625 0.16728102315097212 -15 0.371124267578125 8 Unmodified _HIIRYLVCIS_ REV__ENST00000507760.5_1_4:25363540-25366888:+|nuORF 1.7422754331352037 0.46608156381052757 2 AS{I|L} 3 -1 11.414 0 0 0.93893 0 0 131.21603844024418 810.2868746393186 941.5029130795629 0 0 0 0 0 0 0 0.4247425010840047 0 AS{I|L} 0.93893 - 37 + NaN NaN 145949.6 NaN 17439 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21651 87.719 NaN 142510 35 0 18604 0.264 + 20698 PFRCAKCG 8 55 441.21034671584306 NaN 0 441.1972961425781 PEAK HCD FTMS 0 0 0 21642 24695.55078125 0.6306690334317202 -34 0.7976455688476562 9 Unmodified _PFRCAKCG_ ENSG00000197362|ENST00000491431|ZNF786;nc|ENSG00000197362|Q8N393-2|ZNF786 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 7 5.4846 0 0 0.62296 0 0 98.08080399714397 632.2316554989513 730.3124594960954 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.62296 + + 1 + NaN NaN 95317.5 NaN 17440 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21652 87.722 NaN 236790 35 0 21984 0.261 + 30774 VPPSPTPLSL 10 64 504.2924293194489 1006.5703057056978 2 504.2926940917969 MULTI HCD FTMS 0 0 0 21642 9407.2431640625 0.19418029010439797 1 -0.03971099853515625 10 Unmodified _VPPSPTPLSL_ ENST00000465703.5_1_6:31930825-31931197:+|nuORF 13.042465956692817 0.38911719078024076 2 {I|L}S{I|L} 3 7 28.35 0 0 2.8165 0 0 675.359518028027 0 675.359518028027 0 13.745820481894011 0 0 0 0.6694451763165201 0 0.5 0 + {I|L}S{I|L} 2.8165 + + 39 NaN NaN 126297.7 NaN 17441 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21653 87.725 NaN 164050 35 0 14675 0.261 + 668 APPVRPPLA 9 57 459.2800370929095 NaN 0 459.2799377441406 PEAK HCD FTMS 0 0 0 21642 39219.35546875 0.7400969335102462 -1 0.01975250244140625 11 Unmodified _APPVRPPLA_ REV__ENST00000453407.6_3_6:33289711-33291800:-|nuORF 7.910154910731844 0.25691533546754686 2 RK 2 -1 6.2422 0 0 0.68106 0 0 126.05371324656274 503.2639254205688 629.3176386671315 0 0 0 0 0 0.3054621874040891 0 0 0 RK 0.68106 - 15 + NaN NaN 128518.4 NaN 17442 4209 21642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21655 87.73 NaN 281180 35 0 21098 0.327 -1 0 88 545.3169429313647 1088.6193329295293 2 545.31689453125 MULTI HCD FTMS 0 0 0 21654 140428.203125 0.3352006428759404 7 -0.1917266845703125 1 NaN NaN 2 VS{M(Oxidation (M))|F} 3 -1 23.413 0 0 2.1507 0 0 737.4401775113637 0 737.4401775113637 0 15.938779093716377 0 0 0 0 0 0.2215141619232908 0 VS{M(Oxidation (M))|F} 2.1507 - 162 + NaN NaN 138411.8 NaN 17443 4210 21654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21656 87.735 NaN 458670 35 0 99640 0.261 -1 VMLLCHFFT 9 53 592.2873014144419 NaN 0 592.30517578125 PEAK HCD FTMS 0 0 0 21654 7533.8583984375 0.2688385074843441 3 -0.07262420654296875 2 Carbamidomethyl (C),Oxidation (M) _VM(Oxidation (M))LLC(Carbamidomethyl (C))HFFT_ ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2 7.910154910731844 0.25691533546754686 2 T{M(Oxidation (M))|F}A[EP]P{I|L} 7 -1 18.716 0 0 1.5827 0 0 165.04249058919658 259.1084081684773 424.1508987576739 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}A[EP]P{I|L} 1.5827 - 125 + NaN NaN 173340.2 NaN 17444 4210 21654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21657 87.738 NaN 291350 35 0 56864 0.262 + 15897 LPLLVMGMH 9 50 505.7803182209666 1009.5460835087332 2 505.7803649902344 MULTI HCD FTMS 0 0 0 21654 129886.4765625 0.8187168712178194 -3 0.0858917236328125 3 Unmodified _LPLLVMGMH_ REV__ENSG00000134668|ENST00000360482|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;REV__SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 {I|L}P{I|L}{M(Oxidation (M))|F} 4 -1 56.186 0 0 5.5654 0 0 0 536.2340181940061 536.2340181940061 49.195925227640984 0 0 0 0 0.4247425010840047 2 0 0 {I|L}P{I|L}{M(Oxidation (M))|F} 5.5654 - 28 + NaN NaN 132877 NaN 17445 4210 21654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21658 87.742 NaN 121100 35 0 15036 0.261 + 6079 FPEELSLAF 9 59 526.7689160270926 1051.523279120985 2 526.7686157226562 MULTI HCD FTMS 0 0 0 21654 9490.1240234375 0.15458409364309983 1 -0.0164947509765625 4 Unmodified _FPEELSLAF_ ENSG00000144559|ENST00000455809|TAMM41;ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41 15.847184025352803 0.2234401846867398 2 A{M(Oxidation (M))|F} 2 7 28.711 0 0 2.7305 0 0 815.4072950895383 0 815.4072950895383 0 17.74227503252014 0 0 0 0.9247425010840047 0 0 0 + A{M(Oxidation (M))|F} 2.7305 + + 45 + NaN NaN 107776.3 NaN 17446 4210 21654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21660 87.747 NaN 4647100 35 0 957410 0.326 + 12790 KYDVLFALF 9 90 558.3103858889295 1114.606218844659 2 558.3106079101562 MULTI HCD FTMS 0 0 0 21659 3190228 0.9694447681604824 1 -0.03960418701171875 1 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 57.72198328787511 0.020768266150574023 2 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 5 + 86.129 0 0 7.7273 7.7273 88.734 0 0 0 7.245462655597095 14.876954943324549 7.245462655597095 4.124379954164596 0 2.6989700043360187 1.3979400086720375 0.5774509799928715 0 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YK]DV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}KV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{I|L};[{I|L}A]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[CA]|SS}A{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[MG]|[TS]}V{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VK{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 7.7273;7.3573;7.0773;7.0062;6.6516;6.3926;6.3685;6.3381;6.2816;6.137 -;-;+;-;-;-;-;-;-;- + 4659 NaN NaN 623145.9 NaN 17447 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21661 87.751 NaN 2195200 35 0 108220 0.253 -1 0 124 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 21659 2317731.25 0.46253953270706305 -13 0.32694244384765625 2 NaN NaN 2 {M(Oxidation (M))|F}N 2 -1 12.307 0 0 1.0459 0 0 897.5221424787125 0 897.5221424787125 0 0.8412188239621106 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N 1.0459 - 440 NaN NaN 404900.3 NaN 17448 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21662 87.755 NaN 1154400 35 0 42928 0.261 -1 0 103 611.3561023151733 1220.6976516971465 2 611.3563232421875 MULTI HCD FTMS 0 0 0 21659 1164712.5 0.8115228457829632 -3 0.075958251953125 3 NaN NaN 2 T{[SA]|[TG]} 3 -1 12.364 0 0 1.0128 0 0 943.5492420880875 0 943.5492420880875 0 3.935078169319297 0 0 0 0.3807196863200844 0 0.3494850021680094 0 T{[SA]|[TG]} 1.0128 - 195 NaN NaN 269825.6 NaN 17449 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21663 87.758 NaN 1482200 35 0 382180 0.465 + 10545 IPIFTDVAL 9 51 494.7893008795143 987.5640488258286 2 494.7893981933594 MULTI HCD FTMS 0 0 0 21659 720554.9375 0.950722235695991 -2 0.05620574951171875 4 Unmodified _IPIFTDVAL_ ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant 74.42276476219924 0.007657080072768255 2 {M(Oxidation (M))|F}TDVA{I|L} 6 3 64.105 0 0 6.4912 0 0 323.22053725410314 0 323.22053725410314 0 57.115487929765436 0 0 0 2.048455006504028 0 0.8494850021680094 0 + {M(Oxidation (M))|F}TDVA{I|L} 6.4912 + + 121 NaN NaN 310258.8 NaN 17450 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21664 87.765 NaN 700270 35 0 18349 0.261 -1 0 117 567.3303563093277 1132.6461596854554 2 567.3302001953125 MULTI HCD FTMS 0 0 0 21659 491663.96875 0.11726761431344553 55 -1.4071731567382812 5 NaN NaN 2 {[HG]|PP}NGH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V 8 -1 16.736 0 0 1.4776 0 0 0 268.1239107721313 268.1239107721313 1.2519260965910242 0 0 0 0 1.4604093769761874 0 0.5 0 {[HG]|PP}NGH{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V 1.4776 - 846 + NaN NaN 210790.7 NaN 17451 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21665 87.768 NaN 361280 35 0 11315 0.261 -1 MKKVRMTKI 9 100 575.8430938105198 1149.6716346878395 2 575.843017578125 MULTI HCD FTMS 0 0 0 21659 181752.21875 0.529263327404067 5 -0.145477294921875 6 Oxidation (M) _M(Oxidation (M))KKVRMTKI_ ENST00000367255.9_1_6:152464885-152469242:-|nuORF 3.5964929083625545 0.32375295897743744 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2703 0 0 984.5927447726036 0 984.5927447726036 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2703 + + 159 + NaN NaN 148313.5 NaN 17452 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21666 87.771 NaN 605030 35 0 83508 0.261 -1 FLGCWCVSF 9 84 559.7412862587763 1117.4680195843525 2 561.7626953125 MULTI HCD FTMS 0 0 0 21659 9618.4013671875 0.4241811576220704 -1 0.0164947509765625 7 Carbamidomethyl (C) _FLGC(Carbamidomethyl (C))WCVSF_ nc|ENSG00000147789|P17097-2|ZNF7 8.593279151180031 0.2858735984551981 2 YWTS{M(Oxidation (M))|F} 5 -1 17.511 0 0 1.5671 0 0 415.1667023009525 0 415.1667023009525 0 1.3135065771196253 0 0 0 0 0 0 0 YWTS{M(Oxidation (M))|F} 1.5671 - 711 + NaN NaN 196660.2 NaN 17453 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21667 87.775 NaN 558680 35 0 60918 0.262 + 30480 VLTTPRRG 8 64 450.27463646719247 898.534720001185 2 450.2746887207031 MULTI HCD FTMS 0 0 0 21659 237006.140625 0.13165123554191308 -5 0.1418609619140625 8 Unmodified _VLTTPRRG_ SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant 5.230669730166228 0.5342319408533849 2 P 1 7 9.6041 0 0 1.0689 0 0 678.4039196855584 120.05041681461171 798.4543365001701 0 0 0 0 0 0.5 0 0 0 + P 1.0689 + + 10 + NaN NaN 166856.4 NaN 17454 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21668 87.778 NaN 426430 35 0 36592 0.261 -1 0 77 458.78796655158453 915.5613801699691 2 458.7882385253906 MULTI HCD FTMS 0 0 0 21659 120264.0703125 0.11688459336968926 -5 0.1418609619140625 9 NaN NaN 2 P 1 -1 9.6041 0 0 1.049 0 0 695.4305798543426 120.05069910220936 815.4812789565519 0 0 0 0 0 0.5 0 0 0 P 1.049 - 20 + NaN NaN 157485 NaN 17455 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21669 87.781 NaN 360200 35 0 82835 0.261 -1 RCIDRAVF 8 56 518.7712287476212 1035.5279045620423 2 520.2584228515625 MULTI HCD FTMS 0 0 0 21659 8726.8408203125 0.26847221290056766 -5 0.1418609619140625 10 Carbamidomethyl (C) _RC(Carbamidomethyl (C))IDRAVF_ ENSG00000136152|ENST00000349995|COG3;ENST00000465942.1_1_13:46065604-46085992:+|nuORF 6.354104778181461 0.5325651638111438 2 VA{M(Oxidation (M))|F} 3 -1 20.802 0 0 2.0088 0 0 700.344659788408 0 700.344659788408 0 3.8907562519182157 0 0 0 0 0 0 0 VA{M(Oxidation (M))|F} 2.0088 - 110 + NaN NaN 160432.5 NaN 17456 4211 21659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21671 87.786 NaN 234010 35 0 21270 0.327 + 17789 MFDWVFDPF 9 65 602.2606762504213 1202.5067995676425 2 602.2579956054688 MULTI HCD FTMS 0 0 0 21670 83504.0703125 0.36623643521295846 -3 0.0958099365234375 1 Unmodified _MFDWVFDPF_ REV__QTRT1|p.R374W|1|0.18|ENSG00000213339|chr19:10713178-10713178|C/T|missense_variant 7.910154910731844 0.2910521888787154 2 [YN]{[QD]|[EN]|[WG]|[KD]|[RS]}C(Carbamidomethyl (C)){[HG]|PP}[Y{M(Oxidation (M))|F}] 9 -1 + 16.87 0 0 1.4029 1.4029 85.286 0 0 0 8.910736920302543 0.4305997461732183 0.4305997461732183 9.999999999999998 0 0.4247425010840047 1.5228787452803376 0 0 [YN]{[QD]|[EN]|[WG]|[KD]|[RS]}C(Carbamidomethyl (C)){[HG]|PP}[Y{M(Oxidation (M))|F}];[YN][Q{I|L}]S[R{M(Oxidation (M))|F}][{M(Oxidation (M))|F}E] 1.4029;0.57127 -;- 156 + NaN NaN 127842.6 NaN 17457 4212 21670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21672 87.791 NaN 48152 35 0 5745.2 0.261 + -1 CGMHITYMVH 10 37 624.7674560546875 NaN 0 624.7674560546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GMHITYMVH_ REV__ENSG00000030419|ENST00000434687|IKZF2;REV__ENSG00000185811|ENST00000331340|IKZF1;REV__ENST00000412444.5_1_2:213872086-213945912:-|nuORF;REV__ENST00000484040.1_1_2:213872086-213878776:-|nuORF;REV__nc|ENSG00000030419|Q9UKS7-2|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-4|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-7|IKZF2;REV__nc|ENSG00000030419|Q9UKS7-8|IKZF2;REV__nc|ENSG00000185811|Q13422-2|IKZF1;REV__nc|ENSG00000185811|Q13422-3|IKZF1;REV__nc|ENSG00000185811|Q13422-4|IKZF1;REV__nc|ENSG00000185811|Q13422-5|IKZF1;REV__nc|ENSG00000185811|Q13422-6|IKZF1;REV__nc|ENSG00000185811|Q13422-7|IKZF1 1.6526216038709556 0.33876987398426067 2 P 1 -1 1.2591 0 0 0.10092 0 0 548.2311537091813 599.2010592096311 1147.4322129188124 0 0 0 0 0 0 0 0 0 P 0.10092 - 2 + NaN NaN 99614.9 NaN 17458 4212 21670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21673 87.795 NaN 235770 35 0 58374 0.263 + 31208 VVLSIFSVI 9 35 488.8076573139687 975.6007616947375 2 488.8076171875 MULTI HCD FTMS 0 0 0 21670 40928.22265625 0.7505796999393312 -4 0.11556243896484375 3 Unmodified _VVLSIFSVI_ ENSG00000164187|ENST00000296603|LMBRD2 12.531546534597751 0.2520865569484384 2 VV{I|L} 3 6 35.005 0 0 3.5881 0 0 646.3685196340405 0 646.3685196340405 0 28.015384402724592 0 0 0 0.8807196863200843 0 0 0 + VV{I|L} 3.5881 + + 19 NaN NaN 124990.2 NaN 17459 4212 21670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21674 87.798 NaN 74159 35 0 14860 0.261 -1 SDERKCNYER 10 43 452.87021251036805 NaN 0 452.8703308105469 PEAK HCD FTMS 0 0 0 21670 7267.0849609375 0.30148553079153223 -17 0.45934295654296875 4 Carbamidomethyl (C) _SDERKC(Carbamidomethyl (C))NYER_ ENSG00000104859|ENST00000221455|CLASRP;nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95603.9 NaN 17460 4212 21670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21676 87.803 NaN 2363100 35 0 416110 0.327 -1 LLGGGCCS 8 78 412.1753730997742 822.3361932663485 2 412.17578125 MULTI HCD FTMS 0 0 0 21675 3948094.25 0.5916165160762855 3 -0.08934783935546875 1 2 Carbamidomethyl (C) _LLGGGC(Carbamidomethyl (C))C(Carbamidomethyl (C))S_ SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|67|2|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|61|2|anti-sense 2.577480529830294 0.5381683276125971 2 {I|L} 1 -1 14.49 0 0 1.762 0 0 155.0944290717601 551.1348066678091 706.2292357395693 0 0 0 0 0 0.75 0 0 0 {I|L} 1.762 + + 14 + NaN NaN 362849.5 NaN 17461 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21677 87.807 NaN 1165400 35 0 44713 0.261 -1 0 136 597.8563626585645 1193.698172383929 2 597.8564453125 MULTI HCD FTMS 0 0 0 21675 1075825.75 0.37790879488953644 -11 0.2784271240234375 2 NaN NaN 2 W 1 -1 13.099 0 0 1.0973 0 0 989.6084029520915 0 989.6084029520915 0 3.252574989159953 0 0 0 0 0 0 0 W 1.0973 - 713 + NaN NaN 288908.5 NaN 17462 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21678 87.811 NaN 2325800 35 0 452200 0.261 + 773 ASPSSHPSTSF 11 92 552.7506512175574 1103.4867495019148 2 553.2530517578125 MULTI HCD FTMS 0 0 0 21675 765756.5 0.9219993791682736 -1 0.0165252685546875 3 Unmodified _ASPSSHPSTSF_ ENSG00000140948|ENST00000671377|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;nc|ENSG00000140948|Q8WYQ9|ZCCHC14 41.8396318013385 0.12510225336016262 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PS]{M(Oxidation (M))|F}{[QG]|[NA]}TS{M(Oxidation (M))|F} 10 5 + 45.991 0 0 4.1678 4.1678 82.722 0 0 0 5.897129189869368 11.25039106640397 5.897129189869368 3.6118193142924113 0 0.5 0.958607314841775 1.7302046884880937 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PS]{M(Oxidation (M))|F}{[QG]|[NA]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[ET]|[MV]}{[QG]|[NA]}TS{M(Oxidation (M))|F};[RN]{M(Oxidation (M))|F}[W{M(Oxidation (M))|F}]TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHH{[QG]|[NA]}TS{M(Oxidation (M))|F};{[WT]|[RM]}SY{[NV]|[RG]}TS{M(Oxidation (M))|F};{[MG]|[TS]}WY{[NV]|[RG]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[DS]|[MA]|[CV]|TT}{[NV]|[RG]}TS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[PA]{M(Oxidation (M))|F}{[QG]|[NA]}TS{M(Oxidation (M))|F};[HN]TW{M(Oxidation (M))|F}[PS]{[ES]|[DT]|[{I|L}C]};{[MG]|[TS]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{[NV]|[RG]}TS{M(Oxidation (M))|F} 4.1678;3.8405;3.5616;3.5101;3.4822;3.2054;2.9805;2.913;2.6205;2.5442 -;-;-;-;-;-;-;-;-;- 2852 NaN NaN 455478.7 NaN 17463 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21679 87.814 NaN 586900 35 0 47014 0.261 + 5588 FLPPYTFQI 9 84 563.3024438866664 1124.5903348401328 2 563.302978515625 MULTI HCD FTMS 0 0 0 21675 215126.296875 0.7398780584272291 -1 0.0165252685546875 4 Unmodified _FLPPYTFQI_ ENSG00000023608|ENST00000216294|SNAPC1 118.89474601620944 0.0014903111061077812 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYTQ{M(Oxidation (M))|F}{I|L} 9 2 + 73.21 0 0 6.5099 6.5099 89.423 0 0 0 1.9268061001575632 55.80961151430735 1.9268061001575632 9.208187539523749 0 2.2302046884880937 0 0.805462187404089 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYTQ{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYT[AG]{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[HG]|PP}TQ{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[HG]|PP}T[AG]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[Q{I|L}]TQ{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[Q{I|L}]T[AG]{M(Oxidation (M))|F}{I|L};[Q{I|L}]{[NV]|[RG]}{[ES]|[DT]|[{I|L}C]}PPE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}ET{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}{I|L};KM{M(Oxidation (M))|F}T[WR]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YTPP{I|L}{M(Oxidation (M))|F}{I|L} 6.5099;5.6911;4.8852;4.0664;3.6376;2.8188;2.7279;2.582;2.0634;1.8823 -;-;-;-;-;-;-;-;-;- 2009 NaN NaN 186658.1 NaN 17464 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21680 87.818 NaN 410010 35 0 65718 0.261 + 5908 FPDLFSEQL 9 65 548.2716223606247 1094.5286917880494 2 548.2711791992188 MULTI HCD FTMS 0 0 0 21675 132818.1875 0.17767930167416066 -6 0.15851593017578125 5 Unmodified _FPDLFSEQL_ ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 82.5293158979368 0.005033931517079822 2 K{M(Oxidation (M))|F}SEQ{I|L} 6 4 65.495 0 0 5.9838 0 0 344.13316542793126 0 344.13316542793126 0 45.57319389984244 0 0 0 1.805462187404089 0 0.805462187404089 0 K{M(Oxidation (M))|F}SEQ{I|L} 5.9838 - 184 NaN NaN 152431 NaN 17465 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21681 87.821 NaN 380910 35 0 164740 0.261 -1 0 69 606.3694787228364 1210.7244045124728 2 606.3696899414062 MULTI HCD FTMS 0 0 0 21675 118488.2109375 0.15967661384180235 -11 0.2784271240234375 6 NaN NaN 2 D 1 -1 6.9897 0 0 0.57732 0 0 356.3290930884478 736.3343599908811 1092.663453079329 0 0 0 0 0 0 0 0 0 D 0.57732 - 30 + NaN NaN 151874.7 NaN 17466 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21682 87.824 NaN 214030 35 0 68422 0.261 -1 0 34 645.3782533055894 644.3709768389893 1 645.3781127929688 MULTI HCD FTMS 0 0 0 21675 93618.6640625 0.5614168019471012 34 -0.8895416259765625 7 NaN NaN 2 M 1 -1 3.9794 0 0 0.61756 0 0 54.03157361808935 456.27512537174067 510.30669898983 0 0 0 0 0 0 0 0 0 M 0.61756 - 2 + NaN NaN 127704.6 NaN 17467 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21683 87.828 NaN 161450 35 0 44140 0.264 -1 0 57 467.30121684592694 932.5878807586539 2 467.301025390625 MULTI HCD FTMS 0 0 0 21675 48128.26953125 0.34524944931970303 -6 0.15851593017578125 8 NaN NaN 2 A 1 -1 3.9794 0 0 0.42671 0 0 298.2134433580664 560.3255709283811 858.5390142864476 0 0 0 0 0 0 0 0 0 A 0.42671 - 14 + NaN NaN 123425.5 NaN 17468 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21684 87.831 NaN 267930 35 0 26965 0.261 + -1 CRGCDGCAYP 10 67 579.7086715524138 1157.4027901716274 2 579.7088623046875 MULTI HCD FTMS 0 0 0 21675 51187.48046875 0.7238111077650423 -2 0.05612945556640625 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))RGC(Carbamidomethyl (C))DGCAYP_ REV__ENSG00000171161|ENST00000306562|ZNF672 1.6526216038709556 0.46655611578153744 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.3978 0 0 118.02833221968065 889.2837516053438 1007.3120838250245 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.3978 - 12 + NaN NaN 120000.1 NaN 17469 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21685 87.834 NaN 329160 35 0 34480 0.261 + -1 YGYCETRLYA 10 62 648.2924403429619 1294.5703277527236 2 649.2978515625 MULTI HCD FTMS 0 0 0 21675 23609.79296875 0.5654959809703305 1 -0.03972625732421875 10 Carbamidomethyl (C) _YGYC(Carbamidomethyl (C))ETRLYA_ REV__ENSG00000011485|ENST00000012443|PPP5C 22.736283301280096 0.29844449404982915 2 [YT]{I|L}YNWAYG 9 -1 78.413 0 0 6.0571 0 0 0 160.0472853316859 160.0472853316859 48.75955625825256 0 0 0 0 0.3494850021680094 1.6989700043360187 1.055462187404089 1.2302046884880937 [YT]{I|L}YNWAYG 6.0571 - 473 NaN NaN 145935.2 NaN 17470 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21686 87.838 NaN 68737 35 0 12628 0.261 + -1 LRRECFMIH 9 33 639.3185106750451 NaN 0 639.2711181640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 Carbamidomethyl (C),Oxidation (M) _LRREC(Carbamidomethyl (C))FM(Oxidation (M))IH_ REV__tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98799 NaN 17471 4213 21675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21688 87.843 NaN 1639000 35 0 151790 0.327 + 19971 NYGQYFTLW 9 105 596.2771437276582 1190.5397345221163 2 596.2771606445312 MULTI HCD FTMS 0 0 0 21687 872140.25 0.9508037503557616 -2 0.05625152587890625 1 Unmodified _NYGQYFTLW_ ENSG00000109929|ENST00000264027|SC5D 166.44778350782605 5.759113011535275E-09 2 [YN]GQY{M(Oxidation (M))|F}T{I|L}W 9 0 + 114.83 0 0 9.6456 9.6456 90.308 0 0 0 20.87128018967597 86.60483085717082 20.87128018967597 2.2184874961635614 0 2.774227503252014 1.5228787452803376 0.7059771852360797 1.7971062485323517 + + [YN]GQY{M(Oxidation (M))|F}T{I|L}W;[YN]ANY{M(Oxidation (M))|F}T{I|L}W;[YN]G[AG]Y{M(Oxidation (M))|F}T{I|L}W;[YN]AGGY{M(Oxidation (M))|F}T{I|L}W;[YN]GQY{M(Oxidation (M))|F}TW{I|L};[YN]ANY{M(Oxidation (M))|F}TW{I|L};[YN][YQ]G{M(Oxidation (M))|F}T{I|L}W;[YN]A[YG]G{M(Oxidation (M))|F}T{I|L}W;[YN]G[AG]Y{M(Oxidation (M))|F}TW{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[SG]NY{M(Oxidation (M))|F}T{I|L}W 9.6456;9.4593;8.8721;8.6858;7.7905;7.6042;7.5622;7.5238;7.0171;6.946 +;-;-;-;-;-;-;-;-;- + 6119 NaN NaN 336138.7 NaN 17472 4214 21687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21689 87.847 NaN 541200 35 0 36209 0.261 -1 0 107 619.8695358862443 1237.7245188392885 2 619.8694458007812 MULTI HCD FTMS 0 0 0 21687 506949 0.8065514636473894 -10 0.27373504638671875 2 NaN NaN 2 D 1 -1 9.6041 0 0 0.77595 0 0 105.08038478149759 1014.5704439752561 1119.6508287567538 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 D 0.77595 - 197 + NaN NaN 179523.9 NaN 17473 4214 21687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21690 87.851 NaN 312670 35 0 27286 0.261 + 26708 SYAYILEAF 9 54 538.7686983430062 1075.5228437528124 2 538.7691040039062 MULTI HCD FTMS 0 0 0 21687 71636.0625 0.28745007705532055 6 -0.16573333740234375 3 Unmodified _SYAYILEAF_ ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000155465|ENST00000674313|SLC7A7 78.14939416004806 0.006451203201226903 2 {I|L}{I|L}EA{M(Oxidation (M))|F} 5 4 62.691 0 0 5.8289 0 0 484.1955857000747 0 484.1955857000747 0 36.49288766643714 0 0 0 2.274227503252014 0 0.6505149978319906 0 + {I|L}{I|L}EA{M(Oxidation (M))|F} 5.8289 + + 104 + NaN NaN 133211.1 NaN 17474 4214 21687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21691 87.854 NaN 466560 35 0 44344 0.261 + 20595 PELEVQVALL 10 77 555.8240292283016 1109.633505523403 2 555.8243408203125 MULTI HCD FTMS 0 0 0 21687 116538.09375 0.9577053095015082 -1 0.03972625732421875 4 Unmodified _PELEVQVALL_ REV__ENSG00000168757|ENST00000320701|TSPY2;REV__ENSG00000228927|ENST00000457222|TSPY3;REV__ENSG00000229549|ENST00000287721|TSPY8;REV__ENSG00000233803|ENST00000426950|TSPY4;REV__ENSG00000236424|ENST00000428845|TSPY10;REV__ENSG00000238074|ENST00000440215|TSPY9;REV__ENSG00000258992|ENST00000451548|TSPY1;REV__nc|ENSG00000258992|Q01534-2|TSPY1 16.149105407346934 0.3600587335443843 2 AE[KC]{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 8 -1 51.814 0 0 4.6695 0 0 166.2145734939093 0 166.2145734939093 0 13.39767802270331 0 0 0 0 0 1.8193415193665468 0 AE[KC]{M(Oxidation (M))|F}EA{M(Oxidation (M))|F} 4.6695 - 1497 + NaN NaN 174635.1 NaN 17475 4214 21687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21692 87.857 NaN 97683 35 0 4373.8 0.261 + 23272 RGTKIKDLS 9 64 509.30615105361977 1016.5977491740396 2 509.3061828613281 MULTI HCD FTMS 0 0 0 21687 60517.4609375 0.2500195271398195 16 -0.4485626220703125 5 Unmodified _RGTKIKDLS_ ENST00000407371.1_1_6:90131981-90132104:-|nuORF 7.289230182591677 0.29575926068275815 2 [Y{I|L}]V 3 8 15.501 0 0 1.5248 0 0 0 638.3597785531989 638.3597785531989 6.917950670662025 0 0 0 0 0 1.154901959985743 0 0 [Y{I|L}]V 1.5248 - 129 NaN NaN 108416.4 NaN 17476 4214 21687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21694 87.862 NaN 323510 35 0 24654 0.326 + 29594 VAGFKQMYKK 10 73 600.3339972575632 1198.6534415819262 2 600.3341674804688 MULTI HCD FTMS 0 0 0 21693 242168.796875 0.4798107591663006 -9 0.25751495361328125 1 Unmodified _VAGFKQMYKK_ REV__ENSG00000181555|ENST00000409792|SETD2 3.5964929083625545 0.45626689593999237 2 YP 2 -1 4.9485 0 0 0.41284 0 0 502.3004454678815 433.20469080142817 935.5051362693097 0 0 0 0 0 0 0 0 0 YP 0.41284 - 55 + NaN NaN 146402.6 NaN 17477 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21695 87.867 NaN 262780 35 0 15479 0.261 -1 NYLWMNYSP 9 75 602.2606762504213 1202.5067995676425 2 602.2586059570312 MULTI HCD FTMS 0 0 0 21693 228005.90625 1 0 0 2 Oxidation (M) _NYLWM(Oxidation (M))NYSP_ ENSG00000021776|ENST00000156471|AQR;ENST00000558202.1_1_15:35240356-35256599:-|nuORF 6.723162845929126 0.3000504726104499 2 [YN][NS]C 5 -1 29.577 0 0 2.4596 0 0 0 618.2749117486936 618.2749117486936 14.527712246842482 0 0 0 0 0.7614393726401688 2 0 0 [YN][NS]C 2.4596 - 101 + NaN NaN 147626.4 NaN 17478 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21696 87.871 NaN 358120 35 0 36039 0.261 -1 FYLMQIVEI 9 61 586.3060343375007 1170.5975157418013 2 586.3056640625 MULTI HCD FTMS 0 0 0 21693 71522.390625 0.32340038634812845 5 -0.14593505859375 3 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 34.40172386719151 0.0910440009062557 2 K{I|L}VE{I|L} 5 -1 46.938 0 0 4.0098 0 0 570.2098255841812 0 570.2098255841812 0 36.92085350219358 0 0 0 0.9247425010840047 0 0.4247425010840047 0 K{I|L}VE{I|L} 4.0098 - 159 NaN NaN 152245.7 NaN 17479 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21697 87.874 NaN 388230 35 0 51574 0.261 -1 LIRWGPEIML 10 89 622.3474855429057 1242.6804181526113 2 622.3473510742188 MULTI HCD FTMS 0 0 0 21693 82841.578125 0.7601453461239528 -4 0.11565399169921875 4 Oxidation (M) _LIRWGPEIM(Oxidation (M))L_ ENST00000476918.1_1_3:193854169-193854699:+|nuORF 3.944395688203298 0.4544253912184634 2 [YN]{I|L}[MN]SE{I|L}{I|L} 9 -1 39.42 0 0 3.1722 0 0 0 162.15258862982492 162.15258862982492 23.081597033474424 0 0 0 0 0 1.2218487496163564 0.6109243748081782 0 [YN]{I|L}[MN]SE{I|L}{I|L} 3.1722 - 278 NaN NaN 147418 NaN 17480 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21698 87.877 NaN 173800 35 0 21899 0.263 + 33346 YGCNAKWL 8 60 477.7284442133923 953.4423354935847 2 477.7286682128906 MULTI HCD FTMS 0 0 0 21693 74797.578125 0.6389334516423552 -1 0.01979827880859375 5 Unmodified _YGCNAKWL_ REV__chr2:20205424-20213157|177|53.69|0.75|6.16|-|2|SDC1,None|1 0.7936320650641473 0.540814922690045 2 {I|L}{I|L} 2 -1 10.969 0 0 1.1505 0 0 59.04783030852372 665.2138155572874 724.2616458658111 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1505 - 16 + NaN NaN 121555.6 NaN 17481 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21699 87.881 NaN 145070 35 0 15518 0.261 + 30570 VNLSKKSLSN 10 67 545.3169429313647 1088.6193329295293 2 545.316650390625 MULTI HCD FTMS 0 0 0 21693 45714.8359375 0.10912083224178294 12 -0.34346771240234375 6 Unmodified _VNLSKKSLSN_ REV__ENSG00000178074|ENST00000319974|C2orf69 2.735195868890462 0.4608258780945842 2 S{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.6497 0 0 836.5081344585243 0 836.5081344585243 0 10.880456295278407 0 0 0 0 0 0 0 S{M(Oxidation (M))|F} 1.6497 - 46 + NaN NaN 123634.1 NaN 17482 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21700 87.884 NaN 212580 35 0 29598 0.261 + 1715 CHGLMMLLL 9 45 515.7673632729839 1029.5201736127676 2 515.7679443359375 MULTI HCD FTMS 0 0 0 21693 60283.61328125 0.6086388384382795 -4 0.11565399169921875 7 Unmodified _CHGLMMLLL_ ENST00000395246.5_1_5:130728068-130728134:+|nuORF 14.581692164780916 0.23437375358055648 2 {I|L}{I|L} 2 7 25.217 0 0 2.4493 0 0 785.3402669274569 0 785.3402669274569 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.4493 + + 6 NaN NaN 121107.2 NaN 17483 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21701 87.887 NaN 196710 35 0 37890 0.261 + 15615 LPEDIHSTF 9 61 529.7625587621011 1057.510564591002 2 529.762451171875 MULTI HCD FTMS 0 0 0 21693 35848.9765625 0.5908531548671 -4 0.11565399169921875 8 Unmodified _LPEDIHSTF_ ENSG00000183117|ENST00000635120|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000183117|Q96PZ7-2|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1 25.399314129420986 0.14091189997036632 2 {I|L}PE{[CA]|SS}HE{I|L}{M(Oxidation (M))|F} 9 4 + 48.638 0 0 4.5992 4.5992 87.361 0 0 0 23.421007229268724 14.973024840566467 14.973024840566467 10.29840696594043 0 0.5 0 0.3494850021680094 0 {I|L}PE{[CA]|SS}HE{I|L}{M(Oxidation (M))|F};{I|L}PED{M(Oxidation (M))|F}[YK]{M(Oxidation (M))|F} 4.5992;3.6254 -;- 82 + NaN NaN 126219.6 NaN 17484 4215 21693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21703 87.892 NaN 2587100 35 0 129020 0.326 -1 0 116 589.3431318065191 1176.671710679838 2 589.3433227539062 MULTI HCD FTMS 0 0 0 21702 3062440.5 0.6111579147984412 -8 0.221435546875 1 NaN NaN 2 Q 1 -1 9.2917 0 0 0.78966 0 0 678.4041987170946 367.1968099526025 1045.601008669697 0 0 0 0 0 0.3807196863200844 0 0 0 Q 0.78966 - 364 + NaN NaN 423950.1 NaN 17485 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21704 87.897 NaN 2138600 35 0 430620 0.261 + 12791 KYDVLFALF 9 89 558.3103858889295 1114.606218844659 2 558.310546875 MULTI HCD FTMS 0 0 0 21702 1328588 0.4037306066026626 6 -0.173828125 2 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 63.960520009940105 0.0120409805053046 2 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 5 + 84.396 0 0 7.5719 7.5719 87.724 0 0 0 2.341284356197235 16.53212513775344 2.341284356197235 2.341284356197235 0 2.6861818737241734 1.3010299956639813 0.5138793319624578 0 [{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YK]DV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[MG]|[TS]}V{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[CA]|SS}A{I|L}{M(Oxidation (M))|F};[YK]DV{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 7.5719;7.3618;7.2459;6.4251;6.281;6.2571;6.2151;6.1231;6.0991;5.9 -;+;-;-;-;-;-;-;-;- + 2196 NaN NaN 432939.6 NaN 17486 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21705 87.9 NaN 649860 35 0 110890 0.263 -1 0 74 428.1888325969519 854.3631122607038 2 428.18896484375 MULTI HCD FTMS 0 0 0 21702 392785.65625 0.6057699360847353 -3 0.08934783935546875 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.42 0 0 1.3367 0 0 689.284237604257 0 689.284237604257 0 6.815889512064128 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3367 - 13 + NaN NaN 199249.7 NaN 17487 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21706 87.904 NaN 196400 35 0 33675 0.261 + 15898 LPLLVMGMH 9 44 505.7803182209666 1009.5460835087332 2 505.780029296875 MULTI HCD FTMS 0 0 0 21702 50570.78125 0.3187641461666566 3 -0.08940887451171875 4 Unmodified _LPLLVMGMH_ REV__ENSG00000134668|ENST00000360482|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;REV__SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 {I|L}P{I|L}{M(Oxidation (M))|F} 4 -1 50.662 0 0 5.0183 0 0 0 536.2324312799436 536.2324312799436 43.672137691284405 0 0 0 0 0.5 1.5228787452803376 0 0 {I|L}P{I|L}{M(Oxidation (M))|F} 5.0183 - 16 + NaN NaN 117752.2 NaN 17488 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21707 87.907 NaN 115800 35 0 13825 0.261 + -1 KKQLILLYSC 10 56 633.3690746325052 1264.7235963318103 2 633.3687744140625 MULTI HCD FTMS 0 0 0 21702 73901.1171875 0.7636470830328518 -4 0.10587310791015625 5 Carbamidomethyl (C) _KKQLILLYSC(Carbamidomethyl (C))_ REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF 1.4819007175156935 0.4674597685733628 2 {I|L} 1 -1 5.4846 0 0 0.43366 0 0 767.3911511187229 381.2248629205688 1148.6160140392917 0 0 0 0 0 0 0 0 0 {I|L} 0.43366 + + 11 + NaN NaN 112621.1 NaN 17489 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21708 87.91 NaN 385530 35 0 92056 0.263 -1 LWMEACLG 8 50 490.7138187214364 979.4130845096728 2 490.7139892578125 MULTI HCD FTMS 0 0 0 21702 164437.75 0.8580954875204535 -3 0.08934783935546875 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LWM(Oxidation (M))EACLG_ ENST00000560418.1_2_15:90931626-90974461:+|nuORF 2.577480529830294 0.5381683276125971 2 {I|L} 1 -1 16.237 0 0 1.6578 0 0 155.09527093727223 708.2113377846388 863.3066087219111 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.6578 + + 8 + NaN NaN 152080.2 NaN 17490 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21709 87.914 NaN 302560 35 0 23323 0.261 + -1 IMPQRLILNF 10 70 630.8602174159013 1259.7058818986025 2 630.8599243164062 MULTI HCD FTMS 0 0 0 21702 44820.6484375 0.8505006197104006 1 -0.029754638671875 7 Oxidation (M) _IM(Oxidation (M))PQRLILNF_ REV__ENSG00000178952|ENST00000313511|TUFM;REV__ENST00000569217.1_1_16:28854298-28855510:-|nuORF 3.5964929083625545 0.45626689593999237 2 QDDNA 5 -1 12.607 0 0 1.0008 0 0 325.2080924472337 388.26459680728755 713.4726892545212 0 0 0 0 0 0 0 0 0 QDDNA 1.0008 - 121 + NaN NaN 139933.9 NaN 17491 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21710 87.917 NaN 110490 35 0 31933 0.261 -1 GFFCCKQKTR 10 40 637.8118335406035 NaN 0 637.8114624023438 PEAK HCD FTMS 0 0 0 21702 27643.91796875 0.7194507003693302 3 -0.08940887451171875 8 Carbamidomethyl (C) _GFFC(Carbamidomethyl (C))CKQKTR_ ENSG00000119737|ENST00000394705|GPR75 1.844237919475145 0.33860587697544825 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115647.2 NaN 17492 4216 21702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21712 87.922 NaN 1536400 35 0 172230 0.327 + 30481 VLTTPRRG 8 79 450.27463646719247 898.534720001185 2 450.27459716796875 MULTI HCD FTMS 0 0 0 21711 1722200.5 0.9566411362929236 1 -0.02983856201171875 1 Unmodified _VLTTPRRG_ SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant 5.230669730166228 0.5342319408533849 2 P 1 7 9.6041 0 0 1.0689 0 0 678.4037976152459 120.05040918521718 798.4542068004631 0 0 0 0 0 0.5 0 0 0 + P 1.0689 + + 6 + NaN NaN 324285.7 NaN 17493 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21713 87.926 NaN 1233700 35 0 48301 0.261 -1 0 107 611.3561023151733 1220.6976516971465 2 611.356201171875 MULTI HCD FTMS 0 0 0 21711 1360950.375 0.948253170880703 3 -0.08635711669921875 2 NaN NaN 2 T{[SA]|[TG]} 3 -1 10.859 0 0 0.88954 0 0 943.5495472638687 0 943.5495472638687 0 3.51219677964764 0 0 0 0.3807196863200844 0 0.3494850021680094 0 T{[SA]|[TG]} 0.88954 - 55 NaN NaN 278680.4 NaN 17494 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21714 87.93 NaN 1096700 35 0 109860 0.264 + 16608 LVSARKSR 8 89 458.78796655158453 915.5613801699691 2 458.7879943847656 MULTI HCD FTMS 0 0 0 21711 884590.75 0.8597333338516797 1 -0.02983856201171875 3 Unmodified _LVSARKSR_ REV__CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant;REV__CTNNA3|p.S760Kfs*6|1|0.13|ENSG00000183230|chr10:65966734-65966735|-/CCAAATCTTT|frameshift_variant;REV__ENSG00000183230|ENST00000433211|CTNNA3;REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 11.640296217721598 0.50814828952472 2 P 1 -1 9.6041 0 0 1.049 0 0 695.4305035603973 120.05047784976796 815.4809814101652 0 0 0 0 0 0.5 0 0 0 P 1.049 - 22 + NaN NaN 268118.3 NaN 17495 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21715 87.934 NaN 663900 35 0 19732 0.261 + 768 ASLFKNRAAR 10 113 567.3303563093277 1132.6461596854554 2 567.330078125 MULTI HCD FTMS 0 0 0 21711 484835.90625 0.11563904144528556 61 -1.540069580078125 4 Unmodified _ASLFKNRAAR_ REV__ENST00000361171.7_1_9:129265800-129266223:+|nuORF 5.731851221503515 0.44496410492002586 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.1269 0 0 967.5674223581101 0 967.5674223581101 0 0.2899597348884342 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1269 + + 756 + NaN NaN 201659.1 NaN 17496 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21716 87.937 NaN 290100 35 0 12211 0.261 -1 MKKVRMTKI 9 97 575.8430938105198 1149.6716346878395 2 575.8428344726562 MULTI HCD FTMS 0 0 0 21711 207603.84375 0.6045433826375174 11 -0.31682586669921875 5 Oxidation (M) _M(Oxidation (M))KKVRMTKI_ ENST00000367255.9_1_6:152464885-152469242:-|nuORF 3.5964929083625545 0.32375295897743744 2 A 1 -1 6.9897 0 0 0.60797 0 0 105.07780016813042 970.5458468072874 1075.6236469754178 0 0 0 0 0 0.5 0 0 0 A 0.60797 - 86 + NaN NaN 135418.8 NaN 17497 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21717 87.94 NaN 163570 35 0 46721 0.261 + 30495 VLYRLLLL 8 45 501.8391825319688 1001.6638121307376 2 501.8389587402344 MULTI HCD FTMS 0 0 0 21711 19438.384765625 0.12805801803827135 11 -0.31682586669921875 6 Unmodified _VLYRLLLL_ ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;REV__ENSG00000154721|ENST00000480456|JAM2;REV__nc|ENSG00000154721|P57087-2|JAM2;REV__nc|ENSG00000154721|P57087-3|JAM2 5.230669730166228 0.5342319408533849 2 {I|L}{I|L} 2 6 25.969 0 0 2.5926 0 0 757.4846501767889 0 757.4846501767889 0 18.979400086720375 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.5926 + + 17 NaN NaN 111123.2 NaN 17498 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21718 87.944 NaN 179220 35 0 13517 0.261 + -1 LIRTQLCPLF 10 56 630.8602174159013 1259.7058818986025 2 630.859619140625 MULTI HCD FTMS 0 0 0 21711 41582.203125 0.7890490378793118 2 -0.05965423583984375 7 Carbamidomethyl (C) _LIRTQLC(Carbamidomethyl (C))PLF_ REV__EPHA6|p.S369Hfs*12|1|0.1|ENSG00000080224|chr3:96987982-96987983|-/GCAT|frameshift_variant 3.5964929083625545 0.45626689593999237 2 {I|L}{I|L} 2 -1 5.9691 0 0 0.47385 0 0 689.4338889016092 341.09015833072505 1030.5240472323342 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.47385 + + 22 + NaN NaN 143350 NaN 17499 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21719 87.947 NaN 165200 35 0 19466 0.263 + 11666 IYVPVSLGF 9 59 497.78376995450077 993.5529869758016 2 497.78411865234375 MULTI HCD FTMS 0 0 0 21711 22991.53515625 0.34525522217739396 -2 0.05957794189453125 8 Unmodified _IYVPVSLGF_ ENSG00000172818|ENST00000335987|OVOL1 57.47134341890925 0.0211188941628804 2 [Y{I|L}]VPVS{I|L}G{M(Oxidation (M))|F} 9 0 + 57.457 0 0 5.783 5.783 90.392 0 0 0 7.147642715192504 46.655462488490684 7.147642715192504 15.09582170060014 0 2.4604093769761874 0 0 0 + + [Y{I|L}]VPVS{I|L}G{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[TP]S{I|L}G{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}{I|L}[DV]G{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}{I|L}[DV]G{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[{I|L}A][DV]G{M(Oxidation (M))|F} 5.783;4.2637;2.1729;2.1729;1.9187 +;-;-;-;- + 238 NaN NaN 118832 NaN 17500 4217 21711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21721 87.952 NaN 1457100 35 0 52704 0.327 -1 0 121 597.8563626585645 1193.698172383929 2 597.8563842773438 MULTI HCD FTMS 0 0 0 21720 1284617.5 0.45125174901140735 -6 0.16546630859375 1 NaN NaN 2 W 1 -1 13.979 0 0 1.1711 0 0 989.6083419169353 0 989.6083419169353 0 5.418293336870441 0 0 0 0 0 0 0 W 1.1711 - 507 + NaN NaN 325637 NaN 17501 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21722 87.956 NaN 1598000 35 0 277340 0.264 -1 LLGGGCCS 8 77 412.1753730997742 822.3361932663485 2 412.1756896972656 MULTI HCD FTMS 0 0 0 21720 820551.5 0.12295851845258512 8 -0.234405517578125 2 2 Carbamidomethyl (C) _LLGGGC(Carbamidomethyl (C))C(Carbamidomethyl (C))S_ SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|67|2|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|61|2|anti-sense 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 13.099 0 0 1.5929 0 0 155.09468618898694 551.1346401718472 706.2293263608342 0 0 0 0 0 0.6109243748081782 0 0 0 {I|L} 1.5929 + + 17 + NaN NaN 351125.2 NaN 17502 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21723 87.96 NaN 739130 35 0 141450 0.261 + 8707 HGPVCWATSF 10 76 552.7506512175574 1103.4867495019148 2 553.2527465820312 MULTI HCD FTMS 0 0 0 21720 275609.15625 0.33184370090961257 4 -0.11423492431640625 3 Unmodified _HGPVCWATSF_ REV__ENST00000393193.6_1_17:49248968-49249034:+|nuORF 32.30548876998284 0.21217886106551395 2 {[WT]|[RM]}S{M(Oxidation (M))|F}[QT]TS{M(Oxidation (M))|F} 9 -1 + 45.256 0 0 4.1012 4.1012 81.151 0 0 0 0.1013584425484737 4.282118526775136 0.1013584425484737 0.1013584425484737 0 0.9247425010840047 0 1.2302046884880937 0.2614393726401688 {[WT]|[RM]}S{M(Oxidation (M))|F}[QT]TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[PS]{M(Oxidation (M))|F}{[QG]|[NA]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TW[QT]TS{M(Oxidation (M))|F};{[MG]|[TS]}W{M(Oxidation (M))|F}[QT]TS{M(Oxidation (M))|F};{[WT]|[RM]}SY{[NV]|[RG]}TS{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}W[QT]TS{M(Oxidation (M))|F};{[MG]|[TS]}WY{[NV]|[RG]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{[ET]|[MV]}{[QG]|[NA]}TS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GHH{[QG]|[NA]}TS{M(Oxidation (M))|F};{[WT]|[RM]}S{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}QS{M(Oxidation (M))|F} 4.1012;4.092;4.0203;3.8643;3.8041;3.6789;3.5672;3.4343;3.4343;3.2157 -;-;-;-;-;-;-;-;-;- 1401 NaN NaN 206360.3 NaN 17503 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21724 87.963 NaN 739390 35 0 99059 0.261 + 15028 LLPFSVEAL 9 62 494.7893008795143 987.5640488258286 2 494.7894287109375 MULTI HCD FTMS 0 0 0 21720 159236.734375 0.21010182045963519 5 -0.14557647705078125 4 Unmodified _LLPFSVEAL_ ENSG00000163132|ENST00000382723|MSX1;MSX1|p.E234Sfs*5|1|0.13|ENSG00000163132|chr4:4862931-4862931|G/-|frameshift_variant 25.399314129420986 0.14091189997036632 2 {I|L}DA[QP]EA{I|L} 8 5 37.317 0 0 3.7787 0 0 132.1244869135224 0 132.1244869135224 0 18.332567493688344 0 0 0 1.305462187404089 0 0.28872548999643577 0.3494850021680094 {I|L}DA[QP]EA{I|L} 3.7787 - 186 + NaN NaN 201256.6 NaN 17504 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21725 87.967 NaN 406910 35 0 35502 0.261 + 17859 MIDDVEHLF 9 89 559.7616096533269 1117.5086663734537 2 559.7622680664062 MULTI HCD FTMS 0 0 0 21720 85294.390625 0.7038107517798363 2 -0.0565185546875 5 Unmodified _MIDDVEHLF_ L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|80|2|anti-sense 13.50788311687929 0.24365122550260465 2 {I|L}A{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 7 34.402 0 0 3.0785 0 0 165.97562557816428 0 165.97562557816428 0 4.781024323411394 0 0 0 0 0 0 0 {I|L}A{I|L}{[SA]|[TG]}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 3.0785 - 970 + NaN NaN 149805.7 NaN 17505 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21726 87.97 NaN 242610 35 0 21619 0.261 + 13665 KYPENFFLL 9 67 585.8136157652201 NaN 0 585.8135986328125 PEAK HCD FTMS 0 0 0 21720 82526.71875 0.6293051896222568 12 -0.33934783935546875 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 28.494509381512117 0.13038125526484795 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 4 7 24.295 0 0 2.0772 0 0 131.09835590755785 514.2326892782512 645.331045185809 0 0 0 0 0 1.1643943297944483 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 2.0772 - 97 + NaN NaN 140175.9 NaN 17506 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21727 87.973 NaN 107940 35 0 8362.9 0.261 + 19203 NIIKRYCFV 9 61 578.3205678259714 1154.6265827187426 2 578.320556640625 MULTI HCD FTMS 0 0 0 21720 26752.541015625 0.3857039577532085 12 -0.33934783935546875 7 Unmodified _NIIKRYCFV_ ENST00000467500.1_1_6:111678104-111680097:-|nuORF 1.844237919475145 0.33703635659052655 2 S 1 9 3.9794 0 0 0.34465 0 0 114.21873299916827 950.3695772760374 1064.5883102752057 0 0 0 0 0 0 0 0 0 S 0.34465 - 8 + NaN NaN 106866.9 NaN 17507 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21728 87.977 NaN 432900 35 0 70733 0.261 + 8067 GIALPELICTM 11 86 580.8061691513929 1159.5977853695856 2 580.8064575195312 MULTI HCD FTMS 0 0 0 21720 66340.4296875 0.30771838517311656 -6 0.16546630859375 8 Unmodified _GIALPELICTM_ ENSG00000167531|ENST00000301046|LALBA 17.11289562659939 0.30797719109864646 2 {I|L}[RP]V{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L} 8 8 26.336 0 0 2.2711 0 0 0 237.00029932193596 237.00029932193596 17.931825014007217 0 0 0 0 1 0 0.5 0.4247425010840047 {I|L}[RP]V{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L} 2.2711 - 317 + NaN NaN 170383 NaN 17508 4218 21720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21730 87.982 NaN 1344900 35 0 236760 0.327 + 5909 FPDLFSEQL 9 80 548.2716223606247 1094.5286917880494 2 548.2718505859375 MULTI HCD FTMS 0 0 0 21729 747516.375 1 0 0 1 Unmodified _FPDLFSEQL_ ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 129.77232118876745 0.0006187813247758304 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SEQ{I|L} 9 3 + 84.904 0 0 7.7572 7.7572 90.272 0 0 0 6.395067726032551 38.3139954678868 6.395067726032551 7.92719286378599 0 1.805462187404089 0 2.0986198691406326 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{M(Oxidation (M))|F}KSEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{M(Oxidation (M))|F}SE[AG]{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{M(Oxidation (M))|F}KSE[AG]{I|L};{[ES]|[DT]|[{I|L}C]}KK{M(Oxidation (M))|F}SEQ{I|L};[VP]{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}TEQ{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[KT]{M(Oxidation (M))|F}SEQ{I|L};{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}SK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L};{[ES]|[DT]|[{I|L}C]}QK{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}Q{I|L};{[ES]|[DT]|[{I|L}C]}KK{M(Oxidation (M))|F}SE[AG]{I|L} 7.7572;7.0329;6.9159;6.1916;5.0275;4.7251;4.6639;4.4516;4.2896;4.1862 -;-;-;-;-;-;-;-;-;- 1891 NaN NaN 291000.5 NaN 17509 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21731 87.986 NaN 1025800 35 0 498330 0.261 -1 0 102 606.3694787228364 1210.7244045124728 2 606.3697509765625 MULTI HCD FTMS 0 0 0 21729 299826.53125 0.40405104331591707 -5 0.13903045654296875 2 NaN NaN 2 A 1 -1 3.9794 0 0 0.32868 0 0 122.10550962821851 1014.5632907037782 1136.6688003319966 0 0 0 0 0 0 0 0 0 A 0.32868 - 71 + NaN NaN 244743.1 NaN 17510 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21732 87.99 NaN 858160 35 0 159590 0.263 + 1028 AYGDIILTF 9 57 506.7710161363008 1011.5274793394016 2 506.77117919921875 MULTI HCD FTMS 0 0 0 21729 503728.5625 0.9618352932555948 -5 0.13903045654296875 3 Unmodified _AYGDIILTF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 100.37149154755038 0.004254194004462789 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DG]{I|L}{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 78.879 0 0 7.798 7.798 96.892 0 0 0 18.463286809445343 49.67084689121528 18.463286809445343 78.87903443073903 0 2.305462187404089 1.5228787452803376 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DG]{I|L}{I|L}{I|L}T{M(Oxidation (M))|F} 7.798 + + 285 NaN NaN 236636.7 NaN 17511 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21733 87.993 NaN 538650 35 0 30742 0.261 + 5589 FLPPYTFQI 9 98 563.3024438866664 1124.5903348401328 2 563.3025512695312 MULTI HCD FTMS 0 0 0 21729 193112.484375 0.6641665480834007 5 -0.14540863037109375 4 Unmodified _FLPPYTFQI_ ENSG00000023608|ENST00000216294|SNAPC1 92.65332237495696 0.004456439685314431 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYT{M(Oxidation (M))|F}Q{I|L} 9 0 + 65.666 0 0 5.8391 5.8391 87.206 0 0 0 2.993877830314098 42.962758460285386 2.993877830314098 8.578409410397462 0 2.4604093769761874 0 0.2302046884880938 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYT{M(Oxidation (M))|F}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYTQ{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYT{M(Oxidation (M))|F}[AG]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[HG]|PP}T{M(Oxidation (M))|F}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PPYT[AG]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[Q{I|L}]T{M(Oxidation (M))|F}Q{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[HG]|PP}TQ{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[HG]|PP}T{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[Q{I|L}]TQ{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}T[Q{I|L}]T{M(Oxidation (M))|F}[AG]{I|L} 5.8391;5.0763;5.0203;4.5749;4.2575;3.9138;3.8121;3.7561;3.151;3.095 +;-;-;-;-;-;-;-;-;- + 2799 NaN NaN 184636.6 NaN 17512 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21734 87.997 NaN 164450 35 0 32693 0.261 + 31767 VYLPPEAFTF 10 52 592.305369721496 1182.596186509792 2 592.3053588867188 MULTI HCD FTMS 0 0 0 21729 99375.4375 0.48238930314014333 13 -0.36196136474609375 5 Unmodified _VYLPPEAFTF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 62.57269311338072 0.03206542651389879 2 [YV]{I|L}[WH]A{M(Oxidation (M))|F}T 8 4 57 0 0 4.8199 0 0 0 162.05615887442482 162.05615887442482 41.515318870489466 0 0 0 0 1.7614393726401687 1.6989700043360187 0 0 [YV]{I|L}[WH]A{M(Oxidation (M))|F}T 4.8199 - 87 NaN NaN 123809 NaN 17513 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21735 88 NaN 157380 35 0 39783 0.263 -1 0 61 467.30121684592694 932.5878807586539 2 467.3010559082031 MULTI HCD FTMS 0 0 0 21729 139401.4375 1 0 0 6 NaN NaN 2 A 1 -1 5.4846 0 0 0.5881 0 0 122.10873691087654 736.4330538385374 858.541790749414 0 0 0 0 0 0 0 0 0 A 0.5881 - 7 + NaN NaN 124731.6 NaN 17514 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21736 88.003 NaN 375510 35 0 76366 0.261 + 5257 FFDSVQVVF 9 45 544.2766442276525 1086.5387355221048 2 544.2765502929688 MULTI HCD FTMS 0 0 0 21729 189888.796875 0.2621708368475307 -5 0.13903045654296875 7 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 47.748688679222035 0.03472022231463587 2 VVQ[EC]VV{M(Oxidation (M))|F} 8 6 58.136 0 0 5.3506 0 0 165.0790768109344 0 165.0790768109344 0 51.146387799684874 0 0 0 0.5 0 1.1989700043360187 0 VVQ[EC]VV{M(Oxidation (M))|F} 5.3506 - 153 + NaN NaN 167175.2 NaN 17515 4219 21729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21738 88.008 NaN 416120 35 0 27332 0.327 -1 0 103 619.8695358862443 1237.7245188392885 2 619.8693237304688 MULTI HCD FTMS 0 0 0 21737 448101.03125 0.7129248555901917 -4 0.11611175537109375 1 NaN NaN 2 A 1 -1 8.2268 0 0 0.66467 0 0 387.24769952765706 776.4372042291624 1163.6849037568195 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.66467 - 65 + NaN NaN 165045.7 NaN 17516 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21739 88.013 NaN 931380 35 0 150990 0.262 + 7245 FSVPELVFV 9 79 518.7892019391276 NaN 0 518.7713012695312 PEAK HCD FTMS 0 0 0 21737 8558.423828125 0.3672730116364659 1 -0.03052520751953125 2 Unmodified _FSVPELVFV_ REV__ENST00000463653.1_1_2:241528810-241528954:+|nuORF 8.593279151180031 0.2536050107310812 2 VVA 3 -1 16.198 0 0 1.5642 0 0 165.11681201688742 598.2517183893186 763.368530406206 0 0 0 0 0 0 0 0 0 VVA 1.5642 - 36 + NaN NaN 253059.2 NaN 17517 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21740 88.017 NaN 509600 35 0 29528 0.261 + 31686 VYKRYQMVI 9 81 600.3339972575632 1198.6534415819262 2 600.333984375 MULTI HCD FTMS 0 0 0 21737 239289.5625 0.47410611162659494 -4 0.11611175537109375 3 Unmodified _VYKRYQMVI_ ENSG00000107669|ENST00000224652|ATE1 4.3292370932331545 0.3181982124262546 2 Y{I|L}QW 4 7 18.102 0 0 1.5102 0 0 590.3572891261764 0 590.3572891261764 0 11.112525599926364 0 0 0 0 0 0 0.23965182871044374 Y{I|L}QW 1.5102 - 304 + NaN NaN 191170.2 NaN 17518 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21741 88.02 NaN 586420 35 0 48863 0.261 + 28136 TIPDLDWEL 9 81 551.2769218690398 1100.5392908048796 2 551.2769165039062 MULTI HCD FTMS 0 0 0 21737 272178.46875 0.4330976660184075 -8 0.22198486328125 4 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 96.28474662873226 0.004361282420133734 2 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 63.949 0 0 5.8107 5.8107 85.592 0 0 0 4.731975075880328 16.478174818886373 4.731975075880328 4.731975075880328 0 2.1549471895720984 1.6989700043360187 1.3737125054200234 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};[VP]ED[{I|L}T]WE{I|L};{[QN]|[E{I|L}]|[KN]}[PS][C(Carbamidomethyl (C))R]{I|L}N{I|L};[VP]ED[WE]{I|L}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}[DP][VP];{[QN]|[E{I|L}]|[KN]}[PS][C(Carbamidomethyl (C))R]D[KP];{[QD]|[EN]|[WG]|[KD]|[RS]}{[DS]|[MA]|[CV]|TT}[Y{M(Oxidation (M))|F}]{I|L}T{I|L} 5.8107;5.3807;4.1731;3.6684;3.3118;2.277;2.0247;1.2221;0.81189 +;-;-;-;-;-;-;-;- + 726 NaN NaN 180978.3 NaN 17519 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21742 88.024 NaN 450570 35 0 58108 0.261 + 25139 SAICRYFF 8 77 503.7460569732529 1005.4775610133058 2 504.263916015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _SAICRYFF_ ENSG00000166986|ENST00000262027|MARS1;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1 12.531546534597751 0.5015908124873912 2 P{I|L}GGVAD 7 7 23.286 0 0 2.3159 0 0 130.00528810201462 263.1373690240844 393.14265712609904 0 0 0 0 0 0 0 0.28872548999643577 0 P{I|L}GGVAD 2.3159 - 259 + NaN NaN 156294.2 NaN 17520 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21743 88.027 NaN 141180 35 0 34963 0.262 + 23269 RGSHDNGP 8 60 420.19138596634417 838.3682189994884 2 420.1913757324219 MULTI HCD FTMS 0 0 0 21737 84616.71875 0.5691650511069011 -4 0.11611175537109375 6 Unmodified _RGSHDNGP_ REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I 1.844237919475145 0.5392561982033289 2 {I|L}[WY] 3 -1 10.458 0 0 1.2474 0 0 358.1371836985102 0 358.1371836985102 0 3.1112061033247347 0 0 0 0 0 0 0 {I|L}[WY] 1.2474 - 22 + NaN NaN 115867.3 NaN 17521 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21744 88.031 NaN 165650 35 0 31316 0.261 + 7354 FVDFEGISL 9 52 513.7606957551303 1025.5068385770605 2 513.7606201171875 MULTI HCD FTMS 0 0 0 21737 55225.58203125 0.5388238263299348 1 -0.03052520751953125 7 Unmodified _FVDFEGISL_ ENSG00000118058|ENST00000534358|KMT2A;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A 32.30548876998284 0.10066689432505688 2 S{I|L} 2 7 29.464 0 0 2.8731 0 0 807.3797136946188 0 807.3797136946188 0 17.188878426313252 0 0 0 0.5 0 0.3494850021680094 0 + S{I|L} 2.8731 + + 22 NaN NaN 109115.8 NaN 17522 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21745 88.034 NaN 308790 35 0 61900 0.262 -1 CHCGGGGCG 9 54 404.1206130156357 806.2266730980714 2 404.1212463378906 MULTI HCD FTMS 0 0 0 21737 76256.2265625 0.5166361244614535 -4 0.11611175537109375 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))HCGGGGCG_ ENST00000505767.1_1_4:78909596-78909860:-|nuORF 0 0.3510170533115441 2 {[C(Carbamidomethyl (C))E]|[WC]}V 3 -1 10.062 0 0 1.248 0 0 0 415.05541390301204 415.05541390301204 8.467874862246564 0 0 0 0 0.5 0 0 0 {[C(Carbamidomethyl (C))E]|[WC]}V 1.248 - 10 NaN NaN 136566.7 NaN 17523 4220 21737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21747 88.039 NaN 3199800 35 0 154410 0.327 -1 0 106 589.3431318065191 1176.671710679838 2 589.3434448242188 MULTI HCD FTMS 0 0 0 21746 4314137 0.8609535346318737 -3 0.08704376220703125 1 NaN NaN 2 Q 1 -1 10.485 0 0 0.89103 0 0 634.378252308132 411.2233469261656 1045.6015992342977 0 0 0 0 0 0.5 0 0 0 Q 0.89103 - 106 + NaN NaN 387666.3 NaN 17524 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21748 88.043 NaN 3687500 35 0 771130 0.254 + 25163 SAISAFEIF 9 77 492.7558935818022 983.4972342304044 2 493.2730407714844 MULTI HCD FTMS 0 0 0 21746 159786.34375 0.8751985737097223 -3 0.08704376220703125 2 Unmodified _SAISAFEIF_ ENSG00000119285|ENST00000366582|HEATR1 61.357469665136826 0.01568246967499496 2 {I|L}W{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 6 4 40.015 0 0 4.0687 0 0 130.06104999946064 0 130.06104999946064 0 6.480625354554377 0 0 0 1.3098943791441968 0 0.9291746928241126 0 {I|L}W{M(Oxidation (M))|F}E{I|L}{M(Oxidation (M))|F} 4.0687 - 458 + NaN NaN 636263.5 NaN 17525 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21749 88.048 NaN 701380 35 0 113450 0.261 + 12792 KYDVLFALF 9 77 558.3103858889295 1114.606218844659 2 558.310546875 MULTI HCD FTMS 0 0 0 21746 549047.9375 0.1668443918361567 11 -0.3047332763671875 3 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 43.77239144664712 0.04802738721622131 2 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 71.889 0 0 6.4498 6.4498 90.969 0 0 0 9.114955651920376 44.20818753952375 9.114955651920376 12.781512503836439 0 2.3807196863200843 1.3979400086720375 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT]AAV{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.4498;5.303;5.207;5.0376;4.8871;4.0603;4.0393;3.8908;3.7404;2.8926 -;-;-;-;-;-;-;-;-;- 841 NaN NaN 193210.8 NaN 17526 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21750 88.051 NaN 454340 35 0 55884 0.261 + 4666 EYPAWFEQF 9 94 608.7690869571683 1215.5236209811364 2 608.7702026367188 MULTI HCD FTMS 0 0 0 21746 113835.328125 0.8032538487592416 -3 0.08704376220703125 4 Unmodified _EYPAWFEQF_ ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;nc|ENSG00000198722|O14795|UNC13B 66.45667989310934 0.010234776021261575 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}W{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F} 9 2 + 60.116 0 0 4.9457 4.9457 83.529 0 0 0 3.0102999566398125 11.751284189090825 3.0102999566398125 3.0102999566398125 0 1.8494850021680094 0 1.177825934852436 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}W{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][PS]W{M(Oxidation (M))|F}EQ{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}W{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][PS]W{M(Oxidation (M))|F}E[AG]{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}WE{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][PS]WE{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]QK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EQ{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EK{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EQ{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}W{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}M;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}WE{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F} 4.9457;4.698;4.1882;3.9405;3.5342;3.2866;2.9839;2.9418;2.8386;2.7767 -;-;-;-;-;-;-;-;-;- 700 NaN NaN 158776.9 NaN 17527 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21751 88.054 NaN 206960 35 0 28953 0.262 + 1716 CHGLMMLLL 9 53 515.7673632729839 1029.5201736127676 2 515.7680053710938 MULTI HCD FTMS 0 0 0 21746 60591.87109375 0.611751088463244 2 -0.05853271484375 5 Unmodified _CHGLMMLLL_ ENST00000395246.5_1_5:130728068-130728134:+|nuORF 14.581692164780916 0.23437375358055648 2 A{M(Oxidation (M))|F}{I|L} 3 7 25.93 0 0 2.5186 0 0 680.3134022443375 0 680.3134022443375 0 11.32576888900239 0 0 0 0.4247425010840047 0 0 0 A{M(Oxidation (M))|F}{I|L} 2.5186 - 91 NaN NaN 125663.2 NaN 17528 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21752 88.058 NaN 272440 35 0 34550 0.261 + 32719 WPSLLGDML 9 49 524.2625913095783 1046.5106296859565 2 524.2622680664062 MULTI HCD FTMS 0 0 0 21746 74095.3984375 0.34986112474971875 -3 0.08704376220703125 6 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 52.268347100219714 0.028397529699942435 2 DG{I|L}[HT]N{I|L} 7 7 42.523 0 0 4.0633 0 0 278.12922866035314 0 278.12922866035314 0 36.55410404594221 0 0 0 1.3494850021680094 0 0.7302046884880937 0 DG{I|L}[HT]N{I|L} 4.0633 - 67 NaN NaN 131604.6 NaN 17529 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21753 88.061 NaN 1053000 35 0 162670 0.261 + 17920 MILELDPTF 9 79 539.7781045038707 1077.5416560745414 2 539.778076171875 MULTI HCD FTMS 0 0 0 21746 188351.5 0.10419279302502986 -4 0.11688232421875 7 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 9 2 + 102.95 0 0 9.5544 9.5544 89.797 0 0 0 13.192642221695024 40.37984308431072 13.192642221695024 1.2763625255165323 0 2.6861818737241734 1.6989700043360187 0.9258337024346173 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ES{M(Oxidation (M))|F}{I|L}[EP] 9.5544;9.436;8.0884;7.6208;6.3715;6.1547;5.5854;5.0195;4.9055;4.888 -;+;-;-;-;-;-;-;-;- + 1197 NaN NaN 254053.4 NaN 17530 4221 21746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21755 88.066 NaN 830350 35 0 37951 0.326 -1 0 105 611.3561023151733 1220.6976516971465 2 611.356201171875 MULTI HCD FTMS 0 0 0 21754 1030537.3125 0.7180351996956561 8 -0.2251129150390625 1 NaN NaN 2 Y 1 -1 11.42 0 0 0.93553 0 0 1039.6241633932386 0 1039.6241633932386 0 2.440583195105628 0 0 0 0 0 0 0 Y 0.93553 - 96 + NaN NaN 239052.3 NaN 17531 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21756 88.07 NaN 759730 35 0 88599 0.264 + 30482 VLTTPRRG 8 71 450.27463646719247 898.534720001185 2 450.274658203125 MULTI HCD FTMS 0 0 0 21754 745336.0625 0.4140163341899468 6 -0.17275238037109375 2 Unmodified _VLTTPRRG_ SPEN|p.P1945L|1|0.24|ENSG00000065526|chr1:15932074-15932074|C/T|missense_variant 5.230669730166228 0.5342319408533849 2 P 1 7 8.9794 0 0 0.99934 0 0 678.4038281328241 120.05034815006093 798.454176282885 0 0 0 0 0 0.5 0 0 0 + P 0.99934 + + 4 + NaN NaN 222416.3 NaN 17532 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21757 88.076 NaN 607220 35 0 78021 0.261 + 1682 CFGVGFEP 8 68 428.1888325969519 854.3631122607038 2 428.1888122558594 MULTI HCD FTMS 0 0 0 21754 249620.578125 0.38497495835227796 3 -0.0839385986328125 3 Unmodified _CFGVGFEP_ REV__ENSG00000188585|ENST00000623247|CLEC20A 0.7936320650641473 0.540814922690045 2 W 1 -1 6.9897 0 0 0.81812 0 0 114.01102113640827 551.2665499322874 665.2775710686957 0 0 0 0 0 0 0 0 0 W 0.81812 - 19 + NaN NaN 173394.9 NaN 17533 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21758 88.079 NaN 690410 35 0 74333 0.261 + 33213 YFDPQYFEF 9 84 628.2691200667092 1254.5236872002183 2 628.2689819335938 MULTI HCD FTMS 0 0 0 21754 219289.125 0.7283454240697841 3 -0.0839385986328125 4 Unmodified _YFDPQYFEF_ EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant;ENSG00000084623|ENST00000677711|EIF3I 55.23464941255904 0.024247875903973527 2 VYQPME{M(Oxidation (M))|F} 7 6 64.047 0 0 5.1053 0 0 342.115526267775 0 342.115526267775 0 52.28092914350263 0 0 0 1.7302046884880937 0 0 0.7059771852360797 VYQPME{M(Oxidation (M))|F} 5.1053 - 444 NaN NaN 196983.7 NaN 17534 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21759 88.082 NaN 766120 35 0 177980 0.261 + 35999 YYYVGFAYL 9 56 579.7789502664996 1157.543347599799 2 579.7789306640625 MULTI HCD FTMS 0 0 0 21754 220716.3125 0.3858487071767669 -2 0.05771636962890625 5 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 67.41302359171755 0.009925318700911543 2 YYYVG{M(Oxidation (M))|F}AY{I|L} 9 0 + 75.812 0 0 6.5494 6.5494 91.196 0 0 0 16.355830254716253 60.46002544127475 16.355830254716253 12.781512503836439 0 1.5 1.2218487496163564 0 0 + + YYYVG{M(Oxidation (M))|F}AY{I|L};YYVYG{M(Oxidation (M))|F}AY{I|L};YYYV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L};YYVY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[DV]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L}G{[CT]|[{M(Oxidation (M))|F}G]}[DV]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[{I|L}V]D;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L}G{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}V]D 6.5494;5.4452;4.4581;3.3539;0.87455;0.61449;0.61449;0.35443 +;-;-;-;-;-;-;- + 201 NaN NaN 203345.4 NaN 17535 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21760 88.086 NaN 566910 35 0 63293 0.261 + -1 RLKSPLMVWA 10 93 608.8474289333109 1215.6803049334217 2 608.8475952148438 MULTI HCD FTMS 0 0 0 21754 128359.65625 0.57216244613919 -2 0.05771636962890625 6 Oxidation (M) _RLKSPLM(Oxidation (M))VWA_ REV__ENST00000601667.5_1_19:52217262-52219608:-|nuORF 1.844237919475145 0.46554186016084764 2 QE{M(Oxidation (M))|F}[HS]E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8 -1 33.747 0 0 2.776 0 0 165.2377808165043 0 165.2377808165043 0 25.955612550363796 0 0 0 0 0 1.4361818737241734 0 QE{M(Oxidation (M))|F}[HS]E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 2.776 - 895 + NaN NaN 183279.5 NaN 17536 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21761 88.089 NaN 130130 35 0 10231 0.261 + 34094 YNLVLMLQLH 10 59 622.3474855429057 1242.6804181526113 2 622.3468627929688 MULTI HCD FTMS 0 0 0 21754 93415.765625 0.8571729450554776 3 -0.0839385986328125 7 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 6.2057823575117 0.44245551207394906 2 [YN]{I|L}T{[QC]|[C(Carbamidomethyl (C))A]}E{I|L}{I|L} 9 -1 33.311 0 0 2.6806 0 0 0 162.154252099802 162.154252099802 17.636532636392225 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L}T{[QC]|[C(Carbamidomethyl (C))A]}E{I|L}{I|L} 2.6806 - 293 NaN NaN 116109 NaN 17537 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21762 88.092 NaN 258770 35 0 75601 0.264 + 6980 FPVSIPAVL 9 41 471.7867388344017 941.5589247356035 2 471.7864074707031 MULTI HCD FTMS 0 0 0 21754 108948.0625 0.375751929475851 -2 0.05771636962890625 8 Unmodified _FPVSIPAVL_ ENSG00000151353|ENST00000281017|TMEM18 23.1484247019978 0.1603590852062899 2 V{I|L} 2 7 25.217 0 0 2.6782 0 0 711.3961125886158 0 711.3961125886158 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.6782 + + 3 NaN NaN 132469.2 NaN 17538 4222 21754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21764 88.097 NaN 1795200 35 0 74573 0.327 -1 0 126 597.8563626585645 1193.698172383929 2 597.8563842773438 MULTI HCD FTMS 0 0 0 21763 1693293.875 0.5948088226137768 -1 0.031341552734375 1 NaN NaN 2 W 1 -1 11.99 0 0 1.0044 0 0 989.6087081278728 0 989.6087081278728 0 1.1928031367991565 0 0 0 0 0 0 0 W 1.0044 - 172 + NaN NaN 368088.5 NaN 17539 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21765 88.102 NaN 603050 35 0 89809 0.264 -1 0 75 412.1753730997742 822.3361932663485 2 412.1756896972656 MULTI HCD FTMS 0 0 0 21763 428375.84375 0.06419153348495017 13 -0.35095977783203125 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.5169 0 0 657.2577000796282 0 657.2577000796282 0 1.2371250542002343 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5169 - 25 + NaN NaN 200697.3 NaN 17540 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21766 88.105 NaN 725870 35 0 13857 0.261 + 31788 VYLSRRPSR 9 121 567.3303563093277 1132.6461596854554 2 567.330078125 MULTI HCD FTMS 0 0 0 21763 382546.8125 0.09124189470125364 67 -1.6824874877929688 3 Unmodified _VYLSRRPSR_ ENST00000480342.5_1_1:8525723-8716473:-|nuORF 13.042465956692817 0.2476723265019929 2 [{I|L}T]GV[MT]HTS 9 9 16.523 0 0 1.4588 0 0 0 202.17941379749792 202.17941379749792 3.424414111655956 0 0 0 0 0.5 1 0.5114393726401688 0 [{I|L}T]GV[MT]HTS 1.4588 - 2573 NaN NaN 201516 NaN 17541 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21767 88.109 NaN 324080 35 0 25995 0.263 + 29679 VAVTRSRK 8 73 458.78796655158453 915.5613801699691 2 458.7879638671875 MULTI HCD FTMS 0 0 0 21763 299099.46875 0.29069463299464054 7 -0.1937713623046875 4 Unmodified _VAVTRSRK_ ENSG00000182156|ENST00000328313|ENPP7 4.75600775471527 0.5349361699807423 2 A 1 7 9.732 0 0 1.063 0 0 105.07832155864146 736.4327687745318 841.5110903331733 0 0 0 0 0 0.4247425010840047 0 0 0 + A 1.063 + + 11 + NaN NaN 134479.9 NaN 17542 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21768 88.112 NaN 203440 35 0 7667 0.261 -1 MKKVRMTKI 9 85 575.8430938105198 1149.6716346878395 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21763 194513.59375 0.5664245122369266 17 -0.44229888916015625 5 Oxidation (M) _M(Oxidation (M))KKVRMTKI_ ENST00000367255.9_1_6:152464885-152469242:-|nuORF 3.5964929083625545 0.32375295897743744 2 A 1 -1 6.9897 0 0 0.60797 0 0 105.07879529627424 970.5409639947874 1075.6197592910617 0 0 0 0 0 0.5 0 0 0 A 0.60797 - 81 + NaN NaN 128359.3 NaN 17543 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21769 88.115 NaN 882100 35 0 203380 0.262 + 4843 FAADIISVL 9 51 474.77374910791224 947.5329452826245 2 474.77337646484375 MULTI HCD FTMS 0 0 0 21763 260560.203125 0.12336396311867322 -5 0.14557647705078125 6 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 78.14939416004806 0.006451203201226903 2 {[MS]|[{M(Oxidation (M))|F}A]}AD{I|L}{I|L}SV{I|L} 9 0 + 69.046 0 0 7.2869 7.2869 95.857 0 0 0 5.602802969692746 52.39069071968309 5.602802969692746 69.04615320817378 0 2.0924778212679485 0 1.6237125054200234 0 + + {[MS]|[{M(Oxidation (M))|F}A]}AD{I|L}{I|L}SV{I|L} 7.2869 + + 115 NaN NaN 227141 NaN 17544 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21770 88.119 NaN 118930 35 0 22799 0.261 + 4128 ETHFDSTQT 9 41 533.2269509029318 1064.4393488726635 2 533.227783203125 MULTI HCD FTMS 0 0 0 21763 48362.046875 0.8599143550394379 3 -0.08882904052734375 7 Unmodified _ETHFDSTQT_ ENSG00000163960|ENST00000296328|UBXN7;UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant 4.75600775471527 0.31496297302216103 2 {I|L}R 2 9 15.573 0 0 1.463 0 0 777.2471790998062 0 777.2471790998062 0 8.58349385648225 0 0 0 0 0 0 0 {I|L}R 1.463 - 50 NaN NaN 113891.9 NaN 17545 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21771 88.122 NaN 122520 35 0 6811.9 0.261 -1 MKKNKIVEIF 10 57 633.3690746325052 1264.7235963318103 2 633.8704223632812 MULTI HCD FTMS 0 0 0 21763 24347.1484375 0.38077587283372316 4 -0.1084747314453125 8 Oxidation (M) _M(Oxidation (M))KKNKIVEIF_ tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1 1.6526216038709556 0.46655611578153744 2 {I|L}Y 2 -1 7.9588 0 0 0.62929 0 0 650.4137951616916 335.13559900455317 985.5493941662448 0 0 0 0 0 0 0 0 0 {I|L}Y 0.62929 - 19 + NaN NaN 109546.6 NaN 17546 4223 21763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21773 88.127 NaN 893290 35 0 389970 0.327 -1 0 98 606.3694787228364 1210.7244045124728 2 606.3697509765625 MULTI HCD FTMS 0 0 0 21772 742051.125 1 0 0 1 NaN NaN 2 V 1 -1 4.6041 0 0 0.38028 0 0 840.504904856026 268.1229647272094 1108.6278695832355 0 0 0 0 0 0 0 0 0 V 0.38028 - 27 + NaN NaN 228853.8 NaN 17547 4224 21772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21774 88.131 NaN 488640 35 0 67241 0.261 + 5910 FPDLFSEQL 9 73 548.2716223606247 1094.5286917880494 2 548.2713623046875 MULTI HCD FTMS 0 0 0 21772 323044.71875 0.43215738083329613 5 -0.13134765625 2 Unmodified _FPDLFSEQL_ ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 103.35351024395868 0.004027461563756449 2 K{M(Oxidation (M))|F}SEQ{I|L} 6 4 64.73 0 0 5.914 0 0 344.13243300605626 0 344.13243300605626 0 37.07834387816234 0 0 0 1.6989700043360187 0 1.086696871556164 0.3252574989159953 K{M(Oxidation (M))|F}SEQ{I|L} 5.914 - 754 NaN NaN 166084.8 NaN 17548 4224 21772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21775 88.135 NaN 165290 35 0 19629 0.261 + 13666 KYPENFFLL 9 45 585.8136157652201 NaN 0 585.8137817382812 PEAK HCD FTMS 0 0 0 21772 102781.3671875 0.783756445757932 18 -0.45169830322265625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.1538978316896649 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 28.594 0 0 2.4448 0 0 131.09662570330903 628.2782076471311 759.3748333504402 0 0 0 0 0 1.2396518287104437 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.4448 - 30 + NaN NaN 126724.4 NaN 17549 4224 21772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21776 88.138 NaN 143540 35 0 27871 0.262 + 14918 LLDAFFNK 8 46 484.26758832720844 966.5206237212169 2 484.26788330078125 MULTI HCD FTMS 0 0 0 21772 54706.96484375 1 0 0 4 Unmodified _LLDAFFNK_ FASN|p.E1802K|1|0.15|ENSG00000169710|chr17:82083363-82083363|C/T|missense_variant 14.838274106304384 0.4846187982323419 2 {I|L}{I|L}DAQ 5 4 36.938 0 0 3.8218 0 0 0 423.2056063287719 423.2056063287719 23.839256468719157 0 0 0 0 0.5 0 0 0.3494850021680094 {I|L}{I|L}DAQ 3.8218 - 18 + NaN NaN 133894.8 NaN 17550 4224 21772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21777 88.142 NaN 112450 35 0 10304 0.261 + -1 KDCYTCIFP 9 52 602.2606762504213 1202.5067995676425 2 602.2595825195312 MULTI HCD FTMS 0 0 0 21772 22734.931640625 0.09971202945811848 9 -0.24272918701171875 5 2 Carbamidomethyl (C) _KDC(Carbamidomethyl (C))YTC(Carbamidomethyl (C))IFP_ REV__ENSG00000184517|ENST00000570010|ZFP1;REV__ENST00000568079.5_1_16:75182493-75204229:+|nuORF;REV__nc|ENSG00000184517|Q6P2D0-2|ZFP1 5.230669730166228 0.3113646817964458 2 T 1 -1 6.9897 0 0 0.58126 0 0 164.9717254102 933.4597286704883 1098.4314540806884 0 0 0 0 0 0 0 0 0 T 0.58126 + + 40 + NaN NaN 111650.9 NaN 17551 4224 21772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21778 88.145 NaN 90557 35 0 13747 0.262 + -1 ICHHCQLL 8 36 512.2467605496579 NaN 0 512.24609375 PEAK HCD FTMS 0 0 0 21772 24719.078125 0.620098975419595 1 -0.02294921875 6 Carbamidomethyl (C) _ICHHC(Carbamidomethyl (C))QLL_ REV__ENSG00000204161|ENST00000374153|TMEM273;REV__nc|ENSG00000204161|Q5T292-2|TMEM273;REV__nc|ENSG00000204161|Q5T292-3|TMEM273 5.230669730166228 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115890.8 NaN 17552 4224 21772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21780 88.15 NaN 789380 35 0 170130 0.327 + 5258 FFDSVQVVF 9 50 544.2766442276525 1086.5387355221048 2 544.2767944335938 MULTI HCD FTMS 0 0 0 21779 688266.625 0.950258467166222 1 -0.03623199462890625 1 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 75.76082778847304 0.0072241045649327805 2 SVQVV{M(Oxidation (M))|F} 6 3 80.539 0 0 7.4124 0 0 409.1615467755875 0 409.1615467755875 0 60.08146596900417 0 0 0 2.774227503252014 0 1.579689690656103 0 + SVQVV{M(Oxidation (M))|F} 7.4124 + + 204 NaN NaN 213317.9 NaN 17553 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21781 88.154 NaN 354980 35 0 30663 0.261 -1 0 89 619.8695358862443 1237.7245188392885 2 619.8694458007812 MULTI HCD FTMS 0 0 0 21779 346034.6875 0.5505381876202379 1 -0.03623199462890625 2 NaN NaN 2 A[RV]N 4 -1 12.963 0 0 1.0474 0 0 779.4533558576187 0 779.4533558576187 0 2.8047166798592116 0 0 0 0.7742275032520141 0 0 0.3494850021680094 A[RV]N 1.0474 - 177 NaN NaN 147352 NaN 17554 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21782 88.158 NaN 1496300 35 0 119980 0.261 + 21546 PYLLDLHLF 9 102 565.8160676887678 1129.6175824443355 2 565.816162109375 MULTI HCD FTMS 0 0 0 21779 340748.1875 0.5631400949617079 1 -0.03623199462890625 3 Unmodified _PYLLDLHLF_ ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 131.29775728308752 0.0005262696486345744 2 PY{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 108.29 0 0 9.5862 9.5862 90.105 0 0 0 68.00502122205242 16.478174818886373 16.478174818886373 1.9073659224768136 0 3.3494850021680094 1.6989700043360187 0.25 0 + + PY{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}D{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};[Y{I|L}]P{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F};[Y{I|L}]PD{I|L}{I|L}H{I|L}{M(Oxidation (M))|F};PY{I|L}{I|L}[PA][NP]V{M(Oxidation (M))|F};[H{I|L}]{I|L}D{I|L}YP{I|L}{M(Oxidation (M))|F};[H{I|L}]D{I|L}{I|L}YP{I|L}{M(Oxidation (M))|F};[H{I|L}]{I|L}[YE]VP{I|L}{M(Oxidation (M))|F} 9.5862;9.4174;8.5084;7.3176;6.7379;5.8289;5.1204;4.7034;4.5475;3.2537 +;+;-;-;-;-;-;-;-;- + 2050 + NaN NaN 326817.6 NaN 17555 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21783 88.161 NaN 597980 35 0 100990 0.261 + 1029 AYGDIILTF 9 57 506.7710161363008 1011.5274793394016 2 506.7711181640625 MULTI HCD FTMS 0 0 0 21779 358603.46875 0.6847288365301497 1 -0.03623199462890625 4 Unmodified _AYGDIILTF_ ENSG00000101407|ENST00000373447|TTI1;TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant 81.61307344734483 0.005330412723537057 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DG]{I|L}{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 72.871 0 0 7.204 7.204 94.272 0 0 0 14.555227896979588 56.67280924645823 14.555227896979588 28.837258228914706 0 1.9247425010840047 1.5228787452803376 0.7302046884880937 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[DG]{I|L}{I|L}{I|L}T{M(Oxidation (M))|F};{I|L}{I|L}N[YE]{I|L}T{M(Oxidation (M))|F};[{I|L}T][PG][YT]{I|L}T{M(Oxidation (M))|F};{I|L}{I|L}GG[YE]{I|L}T{M(Oxidation (M))|F} 7.204;4.3532;3.7225;3.0611 +;-;-;- + 236 NaN NaN 181653.8 NaN 17556 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21784 88.165 NaN 567940 35 0 29031 0.261 + 22481 QRKSRGEKNP 10 90 600.3339972575632 1198.6534415819262 2 600.3340454101562 MULTI HCD FTMS 0 0 0 21779 313253.6875 0.6206517584038689 1 -0.03623199462890625 5 Unmodified _QRKSRGEKNP_ ENSG00000174197|ENST00000703841|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA 5.731851221503515 0.44496410492002586 2 SEKPN 5 7 7.4519 0 0 0.62169 0 0 625.380139435245 0 625.380139435245 0 -0.02234300921230581 -0.02234300921230581 0 0 0.3054621874040891 0 0.3807196863200844 0 SEKPN 0.62169 - 243 + NaN NaN 199657.1 NaN 17557 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21785 88.168 NaN 550280 35 0 86006 0.261 -1 ITICKEPDM 9 74 561.7625803403802 1121.5106077475602 2 561.7810668945312 MULTI HCD FTMS 0 0 0 21779 30585.16015625 0.13745759070991997 14 -0.36684417724609375 6 Carbamidomethyl (C),Oxidation (M) _ITIC(Carbamidomethyl (C))KEPDM(Oxidation (M))_ ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3 13.90604991867851 0.24021115267848145 2 [{I|L}T][HC][KQ]V{M(Oxidation (M))|F} 8 -1 32.637 0 0 2.9101 0 0 0 162.0202329458581 162.0202329458581 6.797699526205108 0 0 0 0 0 2 0.7742275032520141 0 [{I|L}T][HC][KQ]V{M(Oxidation (M))|F} 2.9101 - 108 NaN NaN 193135.5 NaN 17558 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21786 88.171 NaN 401800 35 0 81818 0.261 -1 0 71 485.76487813177954 969.5152033303591 2 485.7645568847656 MULTI HCD FTMS 0 0 0 21779 250845.859375 0.6861715582015532 -3 0.0839385986328125 7 NaN NaN 2 S{I|L}{I|L}DAS{I|L} 7 -1 68.219 0 0 7.0364 0 0 252.14514357734532 0 252.14514357734532 0 53.12546665501195 0 0 0 2.4247425010840047 0 0 0 S{I|L}{I|L}DAS{I|L} 7.0364 - 427 NaN NaN 150940.6 NaN 17559 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21787 88.175 NaN 214510 35 0 67740 0.261 -1 TCSVCGKG 8 40 406.1756397942737 810.3367266553474 2 406.17578125 MULTI HCD FTMS 0 0 0 21779 75753.75 0.49040788222863163 1 -0.03623199462890625 8 Carbamidomethyl (C) _TCSVC(Carbamidomethyl (C))GKG_ ENSG00000136451|ENST00000581208|VEZF1;ENSG00000169981|ENST00000396056|ZNF35;ENST00000423931.1_1_3:192873384-192874521:-|nuORF;VEZF1|p.H246Lfs*4|1|0.26|ENSG00000136451|chr17:57981928-57981929|-/GGTCA|frameshift_variant 0.6903765706972694 0.5409681170271811 2 {I|L} 1 -1 5.4846 0 0 0.67682 0 0 77.05799237975994 617.1815665709746 694.2395589507346 0 0 0 0 0 0 0 0 0 {I|L} 0.67682 - 4 + NaN NaN 118395.3 NaN 17560 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21788 88.178 NaN 601340 35 0 71923 0.261 + 34196 YPDLFQVNL 9 89 554.7873854564435 1107.560217979687 2 554.7875366210938 MULTI HCD FTMS 0 0 0 21779 201736.390625 0.47372063684207205 -4 0.1111297607421875 9 Unmodified _YPDLFQVNL_ ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 49.55428908609986 0.03219431099695407 2 DNE{M(Oxidation (M))|F}QVN{I|L} 8 4 55.971 0 0 5.0535 0 0 130.1077880401918 0 130.1077880401918 0 2.9117795237298907 0 0 0 1.1989700043360187 0 0.28872548999643577 0.9489700043360187 DNE{M(Oxidation (M))|F}QVN{I|L} 5.0535 - 1560 + NaN NaN 184676.6 NaN 17561 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21789 88.181 NaN 112830 35 0 10731 0.261 + 6818 FPSLVAFAL 9 48 482.7776778289085 963.540802724617 2 482.77783203125 MULTI HCD FTMS 0 0 0 21779 23617.197265625 0.36670339966541815 1 -0.03623199462890625 10 Unmodified _FPSLVAFAL_ REV__ENSG00000196171|ENST00000359610|OR6K2 16.942295170755138 0.21397866736869717 2 VPE 3 -1 29.693 0 0 3.0816 0 0 620.3492909162125 0 620.3492909162125 0 28.723637474483468 0 0 0 0.5 0 0 0 VPE 3.0816 - 9 NaN NaN 106777 NaN 17562 4225 21779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21791 88.186 NaN 3352200 35 0 167310 0.327 -1 0 108 589.3431318065191 1176.671710679838 2 589.343505859375 MULTI HCD FTMS 0 0 0 21790 4401290 0.8783462793230534 2 -0.052581787109375 1 NaN NaN 2 Q 1 -1 10.485 0 0 0.89103 0 0 634.3786860440706 411.22331021945496 1045.6019962635255 0 0 0 0 0 0.5 0 0 0 Q 0.89103 - 122 + NaN NaN 378862.1 NaN 17563 4226 21790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21792 88.191 NaN 1828200 35 0 126970 0.261 + 28137 TIPDLDWEL 9 97 551.2769218690398 1100.5392908048796 2 551.2777099609375 MULTI HCD FTMS 0 0 0 21790 388783.25 0.6186423155929781 -2 0.05918121337890625 2 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 103.74828524460852 0.00396301343438984 2 [{I|L}T]PD{I|L}DWE{I|L} 9 0 + 56.458 0 0 5.13 5.13 84.719 0 0 0 5.431576817365439 16.478174818886373 5.431576817365439 5.431576817365439 0 2.1752261260283046 1.5228787452803376 1.1906140654642814 0 + + [{I|L}T]PD{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}DP[VP];{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}D[DG][VP];[TP]{I|L}D{I|L}DWE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WM]DP[VP];[VP]ED[{I|L}T]WE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{[MG]|[TS]}DP[VP];[PS]{[QN]|[E{I|L}]|[KN]}{I|L}DWE{I|L} 5.13;4.6365;3.4323;3.2435;2.8717;2.7236;2.6964;2.668;2.6549;2.0741 +;-;-;-;-;-;-;-;-;- + 1633 NaN NaN 374404.8 NaN 17564 4226 21790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21793 88.194 NaN 353230 35 0 41990 0.261 -1 VLHMCSLF 8 74 503.7460569732529 1005.4775610133058 2 504.2642822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _VLHMC(Carbamidomethyl (C))SLF_ ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79 9.347437153973935 0.5250182646323369 2 P{I|L}GGV{[WT]|[RM]}{M(Oxidation (M))|F} 8 -1 22.982 0 0 2.2857 0 0 130.00540179851583 0 130.00540179851583 0 15.535181696360139 0 0 0 0.3252574989159953 0 0 0 P{I|L}GGV{[WT]|[RM]}{M(Oxidation (M))|F} 2.2857 - 185 + NaN NaN 145671.8 NaN 17565 4226 21790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21794 88.198 NaN 1002400 35 0 125420 0.261 + 31768 VYLPPEAFTF 10 76 592.305369721496 1182.596186509792 2 592.2868041992188 MULTI HCD FTMS 0 0 0 21790 32446.376953125 0.15750154727963211 20 -0.46697235107421875 4 Unmodified _VYLPPEAFTF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 25.399314129420986 0.2735354021946395 2 [YV]{I|L}YT{[QS]|[NT]}Y 8 6 45.227 0 0 3.8244 0 0 0 162.09422270189853 162.09422270189853 11.515318870489466 0 0 0 0 0.4247425010840047 1.6989700043360187 0.7614393726401688 0 [YV]{I|L}YT{[QS]|[NT]}Y 3.8244 - 1319 NaN NaN 238953.7 NaN 17566 4226 21790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21795 88.201 NaN 451470 35 0 109980 0.262 + 25235 SARCSSPFF 9 70 501.22932304901406 1000.4440931648281 2 501.2294006347656 MULTI HCD FTMS 0 0 0 21790 121887.5859375 0.7875262961192895 -2 0.05918121337890625 5 Unmodified _SARCSSPFF_ ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant 6.723162845929126 0.3000504726104499 2 SAC 3 6 18.416 0 0 1.8408 0 0 0 736.3327120416624 736.3327120416624 3.812281309285627 0 0 0 0 0 0 0 0 SAC 1.8408 - 166 + NaN NaN 170494 NaN 17567 4226 21790 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21797 88.206 NaN 2759100 35 0 447170 0.327 + 17921 MILELDPTF 9 93 539.7781045038707 1077.5416560745414 2 539.7783813476562 MULTI HCD FTMS 0 0 0 21796 1333163.25 0.7374828582508031 2 -0.052520751953125 1 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 234.6835571636531 7.149366722189799E-32 2 M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 126.42 0 0 11.732 11.732 96.439 0 0 0 66.20728350308305 16.478174818886373 16.478174818886373 13.385788938004964 0 3.2302046884880937 1.6989700043360187 2.7104093769761874 0 + + M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}SE{I|L}P{M(Oxidation (M))|F};{I|L}{I|L}ME{I|L}DTP{M(Oxidation (M))|F} 11.732;10.49;10.076;9.5776;9.1638;9.0727;8.478;8.1607;7.566;7.485 +;-;+;-;-;-;-;-;-;- + 2337 + NaN NaN 506737.1 NaN 17568 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21798 88.21 NaN 744760 35 0 37003 0.261 -1 0 101 611.3561023151733 1220.6976516971465 2 611.3562622070312 MULTI HCD FTMS 0 0 0 21796 594435.1875 0.4141775201979281 13 -0.33382415771484375 2 NaN NaN 2 Y 1 -1 13.099 0 0 1.0731 0 0 1039.6238276998793 0 1039.6238276998793 0 1.8001500618731097 0 0 0 0 0 0 0 Y 1.0731 - 199 + NaN NaN 196102.8 NaN 17569 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21799 88.214 NaN 243030 35 0 23076 0.264 + 31260 VVTPRRAT 8 60 450.27463646719247 898.534720001185 2 450.2746887207031 MULTI HCD FTMS 0 0 0 21796 223218.84375 0.12399272229162202 11 -0.2914581298828125 3 Unmodified _VVTPRRAT_ REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF 2.0597508629832335 0.5389364538378849 2 P 1 -1 8.8515 0 0 0.98511 0 0 678.4038739091912 120.05031000308827 798.4541839122795 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.98511 + + 12 + NaN NaN 132156.8 NaN 17570 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21800 88.217 NaN 586870 35 0 71141 0.261 + 12793 KYDVLFALF 9 74 558.3103858889295 1114.606218844659 2 558.3106689453125 MULTI HCD FTMS 0 0 0 21796 191119.328125 0.05807723860022788 17 -0.408660888671875 4 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 29.84058131909904 0.11198220037953927 2 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 67.374 0 0 6.0446 6.0446 91.166 0 0 0 13.133637307377057 41.35074580863147 13.133637307377057 17.204999916446795 0 2.2302046884880937 1.5228787452803376 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{[CA]|SS}{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A]{M(Oxidation (M))|F}{I|L}{[CA]|SS}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 6.0446;4.501;3.7594 -;-;- 888 NaN NaN 178606.7 NaN 17571 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21801 88.221 NaN 380070 35 0 56114 0.261 -1 WPSLLGDML 9 47 524.2625913095783 1046.5106296859565 2 524.2627563476562 MULTI HCD FTMS 0 0 0 21796 152583.28125 0.7204625323819074 3 -0.085296630859375 5 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 37.97399986684836 0.07464525285885698 2 GD{M(Oxidation (M))|F}{I|L} 4 -1 42.18 0 0 4.0306 0 0 596.3316908267243 0 596.3316908267243 0 35.19077524932108 0 0 0 1.3252574989159953 0 0 0 GD{M(Oxidation (M))|F}{I|L} 4.0306 + + 65 NaN NaN 150586.6 NaN 17572 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21802 88.224 NaN 825090 35 0 120890 0.261 + 8304 GYADIVQLL 9 52 496.27647656720546 990.538400201211 2 496.2767028808594 MULTI HCD FTMS 0 0 0 21796 217512.9375 0.0870664697947355 -6 0.1670074462890625 6 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 82.5293158979368 0.005033931517079822 2 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 99.875 0 0 10.083 10.083 94.21 0 0 0 16.80523450795789 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6989700043360187 1.6989700043360187 0.7302046884880937 0 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]VQ{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}Q{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[AG]{I|L}{I|L} 10.083;9.1533;7.5888;6.6538;5.1421;4.2071;3.6549;2.7198 +;-;-;-;-;-;-;- + 236 NaN NaN 216318.6 NaN 17573 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21803 88.227 NaN 308310 35 0 28796 0.261 + 6385 FPGFFSPML 9 70 529.7545857079988 1057.4946184827975 2 529.7545776367188 MULTI HCD FTMS 0 0 0 21796 66301.90625 0.18601537090175846 -8 0.22423553466796875 7 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 44.40701690623563 0.04511410083598184 2 {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5 4 48.223 0 0 4.5601 0 0 448.21113784004064 0 448.21113784004064 0 33.61891624696778 0 0 0 1 0 0.75 0 + {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 4.5601 + + 284 NaN NaN 138666.8 NaN 17574 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21804 88.231 NaN 408440 35 0 45080 0.261 + 19972 NYGQYFTLW 9 73 596.2771437276582 1190.5397345221163 2 595.2689208984375 MULTI HCD FTMS 0 0 0 21796 71942.796875 0.11107774145688334 12 -0.31096649169921875 8 Unmodified _NYGQYFTLW_ ENSG00000109929|ENST00000264027|SC5D 15.847184025352803 0.2234401846867398 2 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 3 7 23.952 0 0 2.0119 0 0 0 812.3388396604033 812.3388396604033 3.3175623520757824 0 0 0 0 0 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 2.0119 - 210 NaN NaN 178363.4 NaN 17575 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21805 88.234 NaN 140120 35 0 26560 0.261 + 6644 FPLSYVEVL 9 50 533.793727411569 1065.5729018899378 2 533.7953491210938 MULTI HCD FTMS 0 0 0 21796 31057.6484375 0.5542280677136605 3 -0.085296630859375 9 Unmodified _FPLSYVEVL_ ENSG00000141985|ENST00000269886|SH3GL1;nc|ENSG00000141985|Q99961-2|SH3GL1;nc|ENSG00000141985|Q99961-3|SH3GL1 10.823927491677226 0.26684000660059787 2 EV{I|L} 3 6 31.198 0 0 2.9278 0 0 706.3694935529312 0 706.3694935529312 0 24.20818753952375 0 0 0 0.5 0 0 0 + EV{I|L} 2.9278 + + 19 NaN NaN 112788 NaN 17576 4227 21796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21807 88.239 NaN 1615900 35 0 70030 0.327 -1 0 124 597.8563626585645 1193.698172383929 2 597.8563232421875 MULTI HCD FTMS 0 0 0 21806 1618180.125 0.5684233724215556 4 -0.10478973388671875 1 NaN NaN 2 D 1 -1 10.797 0 0 0.90449 0 0 61.05289937155096 1014.5692547441016 1075.6221541156526 0 0 0 0 0 0.4247425010840047 0 0.3054621874040891 0 D 0.90449 - 358 + NaN NaN 341230.6 NaN 17577 4228 21806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21808 88.243 NaN 418350 35 0 99073 0.261 + 36000 YYYVGFAYL 9 53 579.7789502664996 1157.543347599799 2 579.779052734375 MULTI HCD FTMS 0 0 0 21806 248242.984375 0.43396989330725655 4 -0.10478973388671875 2 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 67.41302359171755 0.009925318700911543 2 YYYVG{M(Oxidation (M))|F}AY{I|L} 9 0 + 63.324 0 0 5.4706 5.4706 91.046 0 0 0 3.2568864632742844 63.324412556698135 3.2568864632742844 25.69984993812689 0 1.8252574989159953 0 0 0 + + YYYVG{M(Oxidation (M))|F}AY{I|L};YYYV{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{I|L} 5.4706;3.2504 +;- + 97 NaN NaN 168591.5 NaN 17578 4228 21806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21809 88.247 NaN 342970 35 0 96120 0.262 + 6981 FPVSIPAVL 9 41 471.7867388344017 941.5589247356035 2 471.78662109375 MULTI HCD FTMS 0 0 0 21806 232704.21875 0.8025756235222908 4 -0.10478973388671875 3 Unmodified _FPVSIPAVL_ ENSG00000151353|ENST00000281017|TMEM18 30.224811164608877 0.11021837014094292 2 V{I|L} 2 7 25.217 0 0 2.6782 0 0 711.3956751219308 0 711.3956751219308 0 17.769250191953674 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.6782 + + 16 NaN NaN 139342.2 NaN 17579 4228 21806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21810 88.25 NaN 538480 35 0 64019 0.261 + 6 AAEVKGRRSRS 11 88 608.8474289333109 1215.6803049334217 2 608.8469848632812 MULTI HCD FTMS 0 0 0 21806 98037.9609375 0.4370036597421813 4 -0.10478973388671875 4 Unmodified _AAEVKGRRSRS_ REV__ENSG00000272333|ENST00000420124|KMT2B;REV__KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;REV__KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;REV__KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 2.2527281973983926 0.4090409658946738 2 {I|L}T 2 -1 8.5835 0 0 0.70607 0 0 431.27449546252166 567.2450340599929 998.5195295225146 0 0 0 0 0 0 0 0 0 {I|L}T 0.70607 - 393 + NaN NaN 188996.9 NaN 17580 4228 21806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21811 88.253 NaN 228770 35 0 66958 0.261 + 35084 YTYYVWFVI 9 37 627.3151550790767 1252.6157572249533 2 627.3154296875 MULTI HCD FTMS 0 0 0 21806 44469.05078125 0.3121869170872916 -9 0.257171630859375 5 Unmodified _YTYYVWFVI_ ENSG00000164414|ENST00000369552|SLC35A1 4.3292370932331545 0.3181982124262546 2 V{I|L} 2 7 25.217 0 0 2.0131 0 0 1022.4532340066311 0 1022.4532340066311 0 22.272437815030628 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.0131 + + 6 NaN NaN 124752.9 NaN 17581 4228 21806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21813 88.258 NaN 2639500 35 0 607800 0.326 + 4844 FAADIISVL 9 57 474.77374910791224 947.5329452826245 2 474.7737121582031 MULTI HCD FTMS 0 0 0 21812 1830769.875 0.8667901875634062 1 -0.03277587890625 1 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 120.45040980043947 0.0012363446172167195 2 {[MS]|[{M(Oxidation (M))|F}A]}AD{I|L}{I|L}SV{I|L} 9 0 + 85.614 0 0 9.0355 9.0355 95.51 0 0 0 4.137342758552691 38.97099695308839 4.137342758552691 14.679923888223854 0 2.524227503252014 0 1.6549471895720984 0 + + {[MS]|[{M(Oxidation (M))|F}A]}AD{I|L}{I|L}SV{I|L};[VS]{I|L}[PS]{M(Oxidation (M))|F}SV{I|L};{[MS]|[{M(Oxidation (M))|F}A]}AD{I|L}[VS]{I|L}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}A{[TV]|[{I|L}S]}{I|L}DV{I|L};[VS]{I|L}[PS][YG]{I|L}{I|L};[VS]{I|L}{I|L}[{M(Oxidation (M))|F}V]A{[CP]|[EA]};{[MS]|[{M(Oxidation (M))|F}A]}A{[TV]|[{I|L}S]}[DV]{I|L}{I|L} 9.0355;7.4862;5.0824;4.0971;3.5331;2.9455;1.6235 +;-;-;-;-;-;- + 318 NaN NaN 493403.8 NaN 17582 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21814 88.263 NaN 379040 35 0 61735 0.261 -1 VLGCACGS 8 66 412.1753730997742 822.3361932663485 2 412.1756286621094 MULTI HCD FTMS 0 0 0 21812 442595.84375 0.06632238100932343 19 -0.4469451904296875 2 2 Carbamidomethyl (C) _VLGC(Carbamidomethyl (C))AC(Carbamidomethyl (C))GS_ ENST00000263856.8_1_2:86732285-86732549:-|nuORF 0.6903765706972694 0.5409681170271811 2 {I|L} 1 -1 11.237 0 0 1.3665 0 0 155.09461766213616 551.1345710758737 706.22918873801 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.3665 + + 19 + NaN NaN 164003.7 NaN 17583 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21815 88.266 NaN 596680 35 0 263370 0.261 -1 0 81 606.3694787228364 1210.7244045124728 2 606.3697509765625 MULTI HCD FTMS 0 0 0 21812 240924.9375 0.3246743106817606 5 -0.13755035400390625 3 NaN NaN 2 V 1 -1 3.9794 0 0 0.32868 0 0 796.4777136939166 312.1506441705688 1108.6283578644855 0 0 0 0 0 0 0 0 0 V 0.32868 - 17 + NaN NaN 184148.2 NaN 17584 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21816 88.27 NaN 507260 35 0 16479 0.261 + 3643 ELGRFLRSR 9 113 567.3303563093277 1132.6461596854554 2 567.330078125 MULTI HCD FTMS 0 0 0 21812 197891.28125 0.04719938803857808 73 -1.8323745727539062 4 Unmodified _ELGRFLRSR_ ENSG00000142513|ENST00000270593|ACP4;nc|ENSG00000142513|Q9BZG2-2|ACP4 8.745405648335112 0.2847203663274469 2 [{I|L}T]TV[HC]WS 8 7 22.44 0 0 1.9812 0 0 0 202.17826826198942 202.17826826198942 1.431014891846747 0 0 0 0 0 1.3979400086720375 0 0 [{I|L}T]TV[HC]WS 1.9812 - 2563 NaN NaN 168521 NaN 17585 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21817 88.273 NaN 310950 35 0 67816 0.261 + 16688 LWTDELEWN 9 61 603.2779081140474 1204.5412632948946 2 603.2785034179688 MULTI HCD FTMS 0 0 0 21812 185828.90625 0.8260225815135631 -3 0.07216644287109375 5 Unmodified _LWTDELEWN_ REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF 18.1463463914782 0.20357593197100715 2 {I|L}WDET{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 8 -1 73.053 0 0 6.0648 0 0 0 183.05681787662346 183.05681787662346 47.08342832424712 0 0 0 0 0.8807196863200843 1.6989700043360187 0.3807196863200844 0.3807196863200844 {I|L}WDET{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L} 6.0648 - 270 + NaN NaN 134518.8 NaN 17586 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21818 88.276 NaN 127970 35 0 6755.7 0.261 -1 0 69 575.8430938105198 1149.6716346878395 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21812 79495.3203125 0.23149075170036054 23 -0.5418243408203125 6 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 18.583 0 0 1.6164 0 0 837.5594958712364 0 837.5594958712364 0 10.16711877743475 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6164 - 123 + NaN NaN 120577.3 NaN 17587 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21819 88.28 NaN 296810 35 0 45689 0.261 + 33214 YFDPQYFEF 9 58 628.2691200667092 1254.5236872002183 2 628.26904296875 MULTI HCD FTMS 0 0 0 21812 57878.3515625 0.19223676738757162 10 -0.25844573974609375 7 Unmodified _YFDPQYFEF_ EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant;ENSG00000084623|ENST00000677711|EIF3I 17.44264345198275 0.2096557692338702 2 VY[QP]ME{M(Oxidation (M))|F} 7 5 41.216 0 0 3.2854 0 0 342.11558730293126 0 342.11558730293126 0 33.768732363854994 0 0 0 1.25 0 0 0 VY[QP]ME{M(Oxidation (M))|F} 3.2854 - 140 NaN NaN 155835.7 NaN 17588 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21820 88.283 NaN 112710 35 0 7169.1 0.261 + 35171 YVISNEPVDK 10 46 582.3033820962216 NaN 0 582.7681274414062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YVISNEPVDK_ REV__tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1 10.823927491677226 0.33092050725491123 2 W{I|L} 2 -1 10.701 0 0 0.92045 0 0 601.289580887702 259.1088961236938 860.3984770113957 0 0 0 0 0 0.2742275032520141 0 0 0 W{I|L} 0.92045 - 32 + NaN NaN 106302.2 NaN 17589 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21821 88.286 NaN 443310 35 0 74267 0.261 + 6674 FPNIIDVSI 9 64 509.28450128096677 1016.5544496287336 2 509.78607177734375 MULTI HCD FTMS 0 0 0 21812 10416.6142578125 0.09303716095023704 -6 0.1609954833984375 9 Unmodified _FPNIIDVSI_ ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant 31.26834338654808 0.10542797264966089 2 [W{I|L}][TA]{I|L}DVS{I|L} 9 4 + 46.15 0 0 4.5399 4.5399 88.197 0 0 0 0.9151498112134959 34.91312192373542 0.9151498112134959 13.794934551318072 0 1.305462187404089 0 0.3252574989159953 0 [W{I|L}][TA]{I|L}DVS{I|L};[{I|L}P]YT[QP]VS{I|L} 4.5399;3.1828 -;- 126 NaN NaN 156621.2 NaN 17590 4229 21812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21823 88.291 NaN 367490 35 0 66074 0.327 + 5259 FFDSVQVVF 9 51 544.2766442276525 1086.5387355221048 2 544.2767944335938 MULTI HCD FTMS 0 0 0 21822 253779.453125 0.35038176393464465 6 -0.15718841552734375 1 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 49.93300154707207 0.03166451819912738 2 VVQ[EC]VV{M(Oxidation (M))|F} 8 6 58.889 0 0 5.4198 0 0 165.07887675029934 0 165.07887675029934 0 42.69077524932108 0 0 0 0.5 0 1.274227503252014 0 VVQ[EC]VV{M(Oxidation (M))|F} 5.4198 - 251 + NaN NaN 158708.3 NaN 17591 4230 21822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21824 88.295 NaN 363230 35 0 36086 0.261 + -1 MADEYEIIF 9 80 573.7545172530553 1145.4944815729104 2 573.7548217773438 MULTI HCD FTMS 0 0 0 21822 118756.609375 0.7948681774038666 -9 0.2523040771484375 2 Oxidation (M) _M(Oxidation (M))ADEYEIIF_ REV__ENSG00000091129|ENST00000379028|NRCAM;REV__nc|ENSG00000091129|Q92823-2|NRCAM;REV__nc|ENSG00000091129|Q92823-3|NRCAM;REV__nc|ENSG00000091129|Q92823-4|NRCAM;REV__nc|ENSG00000091129|Q92823-5|NRCAM;REV__nc|ENSG00000091129|Q92823-6|NRCAM;REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant 28.486842064014134 0.11819662193267319 2 {I|L}E{I|L}{M(Oxidation (M))|F} 4 -1 45.394 0 0 3.9628 0 0 625.2015858380875 0 625.2015858380875 0 14.090386930734837 0 0 0 1.110924374808178 0 0.6861818737241735 0 {I|L}E{I|L}{M(Oxidation (M))|F} 3.9628 - 755 NaN NaN 163074.1 NaN 17592 4230 21822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21825 88.299 NaN 152360 35 0 15914 0.261 + 13667 KYPENFFLL 9 52 585.8136157652201 NaN 0 585.8137817382812 PEAK HCD FTMS 0 0 0 21822 110294.078125 0.8410444132514977 24 -0.564971923828125 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.19168101101984525 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 23.43 0 0 2.0032 0 0 131.0947300144474 628.2725313775999 759.3672613920473 0 0 0 0 0 1.1747425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0032 - 61 + NaN NaN 129565.8 NaN 17593 4230 21822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21826 88.302 NaN 262780 35 0 42367 0.261 -1 HRRRLALG 8 45 510.8127667723697 1019.6109806115394 2 510.81280517578125 MULTI HCD FTMS 0 0 0 21822 88952.1484375 1 0 0 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))HRRRLALG_ ENSG00000148288|ENST00000372040|GBGT1;nc|ENSG00000148288|Q8N5D6-2|GBGT1;nc|ENSG00000148288|Q8N5D6-3|GBGT1 2.577480529830294 0.5381683276125971 2 {I|L} 1 -1 1.9897 0 0 0.19514 0 0 131.16852547859054 772.3373507135374 903.505876192128 0 0 0 0 0 0 0 0 0 {I|L} 0.19514 + + 16 + NaN NaN 127511.1 NaN 17594 4230 21822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21827 88.306 NaN 110440 35 0 5751.4 0.261 -1 0 57 633.3692215381826 1264.7238901431651 2 633.3701782226562 MULTI HCD FTMS 0 0 0 21822 56287.87109375 0.08716493959081721 -11 0.30953216552734375 5 NaN NaN 2 G 1 -1 3.0989 0 0 0.24503 0 0 706.4384420003902 498.2291658990844 1204.6676078994747 0 0 0 0 0 0 0 0 0 G 0.24503 - 9 + NaN NaN 101567.1 NaN 17595 4230 21822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21829 88.311 NaN 528320 35 0 64866 0.327 + 34197 YPDLFQVNL 9 90 554.7873854564435 1107.560217979687 2 554.7874145507812 MULTI HCD FTMS 0 0 0 21828 301867.84375 0.7088509254099435 2 -0.05904388427734375 1 Unmodified _YPDLFQVNL_ ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 70.33199760932243 0.0089807860198535 2 {NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}QVN{I|L} 9 3 + 69.792 0 0 6.3014 6.3014 89.044 0 0 0 5.41325298820567 47.35190554423035 5.41325298820567 9.208187539523749 0 1.9247425010840047 0 0.2742275032520141 0.6989700043360187 {NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}QVN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}QVGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}[AG]VN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}{I|L}NN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}[AG]VGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}{I|L}NGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}{I|L}GGN{I|L};{NN|[MP]|[D{I|L}]|[EV]}YP{M(Oxidation (M))|F}{I|L}GGGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[RH]QNN{I|L};{NN|[MP]|[D{I|L}]|[EV]}V[RH]QNGG{I|L} 6.3014;5.47;5.47;5.3552;4.6425;4.5238;4.5238;3.6964;3.0387;2.2073 -;-;-;-;-;-;-;-;-;- 1481 NaN NaN 167502.5 NaN 17596 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21830 88.315 NaN 403950 35 0 82771 0.261 -1 0 61 485.76487813177954 969.5152033303591 2 485.7647399902344 MULTI HCD FTMS 0 0 0 21828 225576.296875 0.6170484117446075 3 -0.08521270751953125 2 NaN NaN 2 {I|L}{I|L}DAS{I|L} 6 -1 67.652 0 0 6.9779 0 0 339.17631728184807 0 339.17631728184807 0 56.92471268044436 0 0 0 2.3494850021680094 0 0 0 {I|L}{I|L}DAS{I|L} 6.9779 - 322 NaN NaN 151377.1 NaN 17597 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21831 88.319 NaN 388400 35 0 24472 0.261 -1 0 94 619.8695358862443 1237.7245188392885 2 619.8690795898438 MULTI HCD FTMS 0 0 0 21828 187873.4375 0.29890501016096555 7 -0.1865997314453125 3 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.56472 0 0 637.4410238215136 484.18380959760765 1121.6248334191212 0 0 0 0 0 0 0 0 0 {I|L} 0.56472 - 107 + NaN NaN 157416.4 NaN 17598 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21832 88.322 NaN 762500 35 0 38334 0.261 + 21178 PPTPPRPLPMP 11 100 600.3339972575632 1198.6534415819262 2 600.3336791992188 MULTI HCD FTMS 0 0 0 21828 215047.765625 0.42607566710919986 7 -0.1865997314453125 4 Unmodified _PPTPPRPLPMP_ REV__ENSG00000074855|ENST00000159087|ANO8;REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF 5.296884461304476 0.39569033063702824 2 TTN[{I|L}V]N 6 -1 13.492 0 0 1.1256 0 0 538.2786616886805 0 538.2786616886805 0 4.512131247412514 0 0 0 0 0 0.2614393726401688 0.3252574989159953 TTN[{I|L}V]N 1.1256 - 853 NaN NaN 198993.4 NaN 17599 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21833 88.325 NaN 567680 35 0 94441 0.261 + 28251 TLLDYWQAL 9 66 561.7952787985263 1121.5760046638525 2 561.7808227539062 MULTI HCD FTMS 0 0 0 21828 26706.955078125 0.019854436912740265 49 -1.217041015625 5 Unmodified _TLLDYWQAL_ ENSG00000183778|ENST00000684187|B3GALT5 10.823927491677226 0.26684000660059787 2 [{I|L}T][HC]{[QG]|[NA]}AV{M(Oxidation (M))|F} 9 6 29.842 0 0 2.6607 0 0 0 162.08543586092495 162.08543586092495 0.9139245433794976 0 0 0 0 0 1.6989700043360187 0.75 0 [{I|L}T][HC]{[QG]|[NA]}AV{M(Oxidation (M))|F} 2.6607 - 95 NaN NaN 196502.6 NaN 17600 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21834 88.329 NaN 341960 35 0 16474 0.261 + 21547 PYLLDLHLF 9 75 565.8160676887678 1129.6175824443355 2 565.8158569335938 MULTI HCD FTMS 0 0 0 21828 98303.4921875 0.16246201727936194 7 -0.1865997314453125 6 Unmodified _PYLLDLHLF_ ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 74.42276476219924 0.007657080072768255 2 PY{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F} 9 0 + 89.849 0 0 7.954 7.954 95.787 0 0 0 76.3545098069735 12.887955392469692 12.887955392469692 32.048734808312034 0 2.6307196863200843 1.6989700043360187 0 0 + + PY{I|L}{I|L}D{I|L}H{I|L}{M(Oxidation (M))|F};PY{I|L}{I|L}D[WK][VP];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[RN]{I|L}{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}[RN]{I|L}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS][PA]{I|L}{I|L}{[QN]|[E{I|L}]|[KN]} 7.954;5.1168;3.5068;3.2983;2.6013 +;-;-;-;- + 618 + NaN NaN 142986.1 NaN 17601 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21835 88.332 NaN 656880 35 0 39748 0.261 + -1 CHMLQVLL 8 79 507.26771889398316 1012.5208848547663 2 507.26788330078125 MULTI HCD FTMS 0 0 0 21828 174178.484375 0.5643705868927614 -4 0.1048583984375 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))HMLQVLL_ REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant;REV__ENSG00000164742|ENST00000297323|ADCY1 20.871210003555333 0.44023077629866025 2 [YG]AD{I|L}VKT 8 -1 60.373 0 0 5.9627 0 0 0 162.05584131412346 162.05584131412346 23.289719040763046 0 0 0 0 2.055462187404089 2 0 0 [YG]AD{I|L}VKT 5.9627 - 821 + NaN NaN 204646.4 NaN 17602 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21836 88.335 NaN 320690 35 0 25190 0.261 -1 HMDCQDLM 8 66 504.68298825160525 1007.3514235700105 2 504.68304443359375 MULTI HCD FTMS 0 0 0 21828 55884.16015625 0.41577174919727705 6 -0.1604766845703125 8 Oxidation (M) _HMDCQDLM(Oxidation (M))_ ENSG00000149633|ENST00000279024|KIAA1755;ENST00000460881.5_1_20:36841446-36845354:-|nuORF;ENST00000487506.1_1_20:36841446-36845915:-|nuORF 2.8892196856762586 0.5377058178582064 2 {I|L}{M(Oxidation (M))|F} 2 -1 17.474 0 0 1.7347 0 0 729.2207605834856 0 729.2207605834856 0 6.0475750727131565 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7347 + + 71 + NaN NaN 134084 NaN 17603 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21837 88.339 NaN 190220 35 0 8459.9 0.261 -1 0 74 633.3692215381826 1264.7238901431651 2 633.8706665039062 MULTI HCD FTMS 0 0 0 21828 62010.3984375 0.14849577823360066 -9 0.2446746826171875 9 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.36404 0 0 148.15647978925682 953.5153265620107 1101.6718063512676 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.36404 - 25 + NaN NaN 120253.1 NaN 17604 4231 21828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21839 88.344 NaN 2319900 35 0 102670 0.327 -1 0 119 589.3431318065191 1176.671710679838 2 589.3436889648438 MULTI HCD FTMS 0 0 0 21838 2638275.25 0.5265091029374567 8 -0.19609832763671875 1 NaN NaN 2 QK 2 -1 12.959 0 0 1.1013 0 0 634.3786682959757 283.1183693192636 917.4970376152393 0 0 0 0 0 0.5 0 0 0 QK 1.1013 - 147 + NaN NaN 368225.7 NaN 17605 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21840 88.348 NaN 3369700 35 0 507640 0.255 + 10884 IWDETPLYF 9 102 592.2868806334895 1182.559208333779 2 592.2867431640625 MULTI HCD FTMS 0 0 0 21838 2178124.5 0.9314103389190528 2 -0.05234527587890625 2 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 170.55093314911917 3.526520053928E-09 2 [W{I|L}]DETP{I|L}Y{M(Oxidation (M))|F} 9 0 + 106.99 0 0 9.0475 9.0475 95.229 0 0 0 15.253312076568903 66.17931555708239 15.253312076568903 13.127269249252137 0 2.829689690656103 1.3010299956639813 1.8851518780601921 0 + + [W{I|L}]DETP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DTEP{I|L}Y{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}W{I|L}TP{I|L}Y{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}WP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DETP[Y{M(Oxidation (M))|F}]{I|L};[W{I|L}]DP{[ET]|[MV]}{I|L}Y{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[RP]{M(Oxidation (M))|F}P{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DEDV{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[HG]|PP}[YG]ETP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DTEP[Y{M(Oxidation (M))|F}]{I|L} 9.0475;7.9374;7.2263;6.5489;5.8979;5.6909;5.2056;5.1487;4.9742;4.7878 +;-;-;-;-;-;-;-;-;- + 6733 NaN NaN 585807.6 NaN 17606 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21841 88.351 NaN 1137000 35 0 84287 0.261 + 28138 TIPDLDWEL 9 95 551.2769218690398 1100.5392908048796 2 551.2769165039062 MULTI HCD FTMS 0 0 0 21838 490777.6875 0.7809385950561579 4 -0.10475921630859375 3 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 96.28474662873226 0.004361282420133734 2 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 66.294 0 0 6.0238 6.0238 85.992 0 0 0 4.832633025923471 16.478174818886373 4.832633025923471 4.832633025923471 0 2.1549471895720984 2 1.3371804965004639 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[{I|L}T]YEVSYN{I|L};[VP]ET{I|L}DWE{I|L};[{I|L}T]YE[QA]YT{I|L};[VP]ED[{I|L}T]WE{I|L};[{I|L}T]YEVSYGG{I|L};[{I|L}T]YEVSY{I|L}N;{[QN]|[E{I|L}]|[KN]}[YT]VSYN{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}R[NP][C(Carbamidomethyl (C))S]{I|L} 6.0238;5.5847;4.2434;4.1522;3.7464;3.4011;3.1291;2.7593;2.7316;2.5224 +;-;-;-;-;-;-;-;-;- + 1654 NaN NaN 280654.6 NaN 17607 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21842 88.355 NaN 401740 35 0 91443 0.261 + 15379 LPDFTELDL 9 58 531.7709865587702 1061.5274201843404 2 531.771240234375 MULTI HCD FTMS 0 0 0 21838 160661.765625 0.6313088735023122 -1 0.032867431640625 4 Unmodified _LPDFTELDL_ ENSG00000132005|ENST00000254325|RFX1 65.23502041540118 0.010630085227462206 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}MTE{I|L}D 8 4 69.844 0 0 6.5796 0 0 0 128.07091884892807 128.07091884892807 54.84427538256881 0 0 0 0 1.9247425010840047 1.5228787452803376 0.3252574989159953 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}MTE{I|L}D 6.5796 - 221 NaN NaN 152787.5 NaN 17608 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21843 88.358 NaN 618150 35 0 80465 0.261 + 4458 EYIKFLDLF 9 79 594.3211576426318 1186.6277623520634 2 595.32421875 MULTI HCD FTMS 0 0 0 21838 93764.8203125 0.5266595491102616 1 -0.02617645263671875 5 Unmodified _EYIKFLDLF_ ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1 99.75527289724121 0.004270341300239591 2 [YE]{I|L}K{M(Oxidation (M))|F}{I|L}D{I|L}{M(Oxidation (M))|F} 9 0 + 58.334 0 0 4.916 4.916 87.478 0 0 0 9.966824045960706 9.009461452434238 9.009461452434238 9.226511368683518 0 1.5303695511246982 1.3979400086720375 0.6989700043360187 0 + + [YE]{I|L}K{M(Oxidation (M))|F}{I|L}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}K[YE]{I|L}{M(Oxidation (M))|F};[YQ]{I|L}[Y{I|L}]{I|L}D{I|L}{M(Oxidation (M))|F} 4.916;4.1384;2.9629 +;-;- + 228 + NaN NaN 193649.3 NaN 17609 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21844 88.361 NaN 431620 35 0 103270 0.261 + 16248 LPYTATIEDIL 11 69 624.8396489230074 1247.6647449128147 2 624.839599609375 MULTI HCD FTMS 0 0 0 21838 157009.53125 0.6099714566712853 -2 0.05242919921875 6 Unmodified _LPYTATIEDIL_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 47.594388314883695 0.09129669622414652 2 WG{I|L}TGED{I|L}{I|L} 9 6 66.878 0 0 5.3603 0 0 245.13687331367345 0 245.13687331367345 0 30.85084722542809 0 0 0 1.055462187404089 0 0.3494850021680094 0 WG{I|L}TGED{I|L}{I|L} 5.3603 - 897 NaN NaN 149394.9 NaN 17610 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21845 88.365 NaN 207750 35 0 51947 0.263 -1 SAHDWLCL 8 49 501.22932304901406 1000.4440931648281 2 501.2287902832031 MULTI HCD FTMS 0 0 0 21838 123388.90625 0.7972264572628373 4 -0.10475921630859375 7 Carbamidomethyl (C) _SAHDWLC(Carbamidomethyl (C))L_ ENST00000392688.6_1_1:152286136-152286469:+|nuORF 5.230669730166228 0.5342319408533849 2 SAC 3 -1 18.416 0 0 1.8408 0 0 0 736.3384209772206 736.3384209772206 11.426675035687314 0 0 0 0 0 0 0 0 SAC 1.8408 - 10 + NaN NaN 122466.7 NaN 17611 4232 21838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21847 88.37 NaN 4400200 35 0 648490 0.327 + 8305 GYADIVQLL 9 81 496.27647656720546 990.538400201211 2 496.27667236328125 MULTI HCD FTMS 0 0 0 21846 2498240 1 0 0 1 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 197.16714112316518 2.0801358606533006E-17 2 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 112.91 0 0 11.399 11.399 95.41 0 0 0 19.80688313432394 16.478174818886373 16.478174818886373 9.47621246364342 0 2.6989700043360187 1.6989700043360187 1.7803695511246982 0.7302046884880937 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]EG{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YG]EG{I|L}V[AG]{I|L}{I|L};[YG]{I|L}{[DA]|[EG]}VQ{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L};[Q{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}VQ{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]VQ{I|L}{I|L};[YG]{I|L}{[DA]|[EG]}V[AG]{I|L}{I|L} 11.399;10.442;9.7318;9.2084;8.7751;8.3566;8.2734;7.5943;7.2159;6.6898 +;-;-;-;-;-;-;-;-;- + 910 NaN NaN 737180.1 NaN 17612 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21848 88.374 NaN 1021900 35 0 148200 0.261 + 17922 MILELDPTF 9 82 539.7781045038707 1077.5416560745414 2 539.7783203125 MULTI HCD FTMS 0 0 0 21846 349559.78125 0.1933704267693964 8 -0.18613433837890625 2 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 187.92953380467262 5.336922440765807E-13 2 M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F} 9 0 + 113.25 0 0 10.51 10.51 96.478 0 0 0 42.880077034166376 16.478174818886373 16.478174818886373 14.371739432769516 0 2.274227503252014 2 2.474907363720609 0 + + M{I|L}{I|L}E{I|L}DPT{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}P{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}E{I|L}DT{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}P{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ESE{I|L}{I|L}M;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TD{I|L}E{I|L}{I|L}M;[{I|L}P]{M(Oxidation (M))|F}ESE{I|L}{I|L}M;[{I|L}P]Y{[CP]|[EA]}E{I|L}{I|L}M 10.51;9.1765;7.6038;7.3155;6.4124;6.2277;5.7429;4.655;4.5514;2.7675 +;-;-;-;-;-;-;-;-;- + 954 + NaN NaN 239769.6 NaN 17613 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21849 88.378 NaN 366120 35 0 79127 0.261 + 6863 FPTLEITL 8 45 467.26824822053845 932.5219435078769 2 467.2681579589844 MULTI HCD FTMS 0 0 0 21846 151293.0625 0.1886825498909655 -6 0.16390228271484375 3 Unmodified _FPTLEITL_ ENSG00000183508|ENST00000369448|TENT5C 46.92087301778293 0.1468278106890452 2 {I|L}T{I|L} 3 5 40.445 0 0 4.3372 0 0 587.294969536585 0 587.294969536585 0 14.503187623076954 0 0 0 1 0 0.4247425010840047 0 + {I|L}T{I|L} 4.3372 + + 15 NaN NaN 145429.9 NaN 17614 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21850 88.381 NaN 677980 35 0 93990 0.261 + 6386 FPGFFSPML 9 61 529.7545857079988 1057.4946184827975 2 529.75439453125 MULTI HCD FTMS 0 0 0 21846 240205.375 0.6739156451210025 -2 0.05904388427734375 4 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 81.86404211737425 0.005249203329642222 2 {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5 4 67.563 0 0 6.389 0 0 448.2094898908219 0 448.2094898908219 0 51.18771869071438 0 0 0 1.9247425010840047 0 1.274227503252014 0 + {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 6.389 + + 254 NaN NaN 197302.9 NaN 17615 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21851 88.384 NaN 527290 35 0 59317 0.261 + 16506 LTGVTFAFLF 10 82 558.3103858889295 1114.606218844659 2 558.310791015625 MULTI HCD FTMS 0 0 0 21846 117015.7109375 0.0355586712802153 23 -0.5487823486328125 5 Unmodified _LTGVTFAFLF_ ENSG00000146477|ENST00000275300|SLC22A3 37.97399986684836 0.1629881689457739 2 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 68.668 0 0 6.1607 6.1607 90.651 0 0 0 14.867574738500338 39.155462488490684 14.867574738500338 13.45098040014257 0 2.274227503252014 1.5228787452803376 0.2614393726401688 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}T][YQ]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}A{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.1607;4.9539;4.4019;3.1951 -;-;-;- 1178 NaN NaN 168446.4 NaN 17616 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21852 88.388 NaN 102830 35 0 31394 0.263 + 20432 PAFSCAPF 8 45 420.19138596634417 838.3682189994884 2 420.1915588378906 MULTI HCD FTMS 0 0 0 21846 55591.1796875 0.37392795531827283 9 -0.2089691162109375 6 Unmodified _PAFSCAPF_ REV__ENSG00000213638|ENST00000329478|ADAT3;REV__nc|ENSG00000213638|Q96EY9|ADAT3 5.760428011301431 0.5334459684533844 2 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.3829 0 0 673.2890239084712 0 673.2890239084712 0 1.1362189075153122 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3829 + + 9 + NaN NaN 111619 NaN 17617 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21853 88.391 NaN 107690 35 0 23603 0.261 + 25710 SKCQGSVC 8 53 406.1756397942737 810.3367266553474 2 406.17572021484375 MULTI HCD FTMS 0 0 0 21846 29881.185546875 0.19344215860632333 9 -0.2089691162109375 7 Unmodified _SKCQGSVC_ REV__ENSG00000187720|ENST00000261862|THSD4;REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 8.9794 0 0 1.1081 0 0 542.1587614227287 152.07129846744377 694.2300598901725 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L} 1.1081 - 9 + NaN NaN 101677.6 NaN 17618 4233 21846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21855 88.396 NaN 1218000 35 0 48160 0.327 -1 0 128 597.8563626585645 1193.698172383929 2 597.8562622070312 MULTI HCD FTMS 0 0 0 21854 1051500 0.3693638099165665 10 -0.21858978271484375 1 NaN NaN 2 W 1 -1 10.596 0 0 0.88766 0 0 989.6086013163493 0 989.6086013163493 0 0.8196350453146373 0 0 0 0 0 0 0 W 0.88766 - 302 + NaN NaN 293513.5 NaN 17619 4234 21854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21856 88.4 NaN 837100 35 0 188390 0.263 + 4845 FAADIISVL 9 47 474.77374910791224 947.5329452826245 2 474.7736511230469 MULTI HCD FTMS 0 0 0 21854 579299.625 0.2742732647428781 6 -0.1437530517578125 2 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 61.357469665136826 0.01568246967499496 2 {I|L}{I|L}SV{I|L} 5 4 63.443 0 0 6.6956 0 0 404.1694813459 0 404.1694813459 0 32.18887842631325 0 0 0 1.8494850021680094 0 0.8494850021680094 0 + {I|L}{I|L}SV{I|L} 6.6956 + + 65 NaN NaN 214250.3 NaN 17620 4234 21854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21857 88.404 NaN 443480 35 0 123150 0.261 + -1 FPMMCTLL 8 56 522.7321168211972 1043.4496807091944 2 522.7321166992188 MULTI HCD FTMS 0 0 0 21854 121150.9140625 0.8326546551783757 2 -0.0524139404296875 3 Carbamidomethyl (C),2 Oxidation (M) _FPM(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TLL_ REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF 2.577480529830294 0.5381683276125971 2 E 1 -1 6.9897 0 0 0.66986 0 0 324.08696205860684 587.2823580377561 911.369320096363 0 0 0 0 0 0 0 0 0 E 0.66986 - 20 + NaN NaN 154319.5 NaN 17621 4234 21854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21858 88.407 NaN 314400 35 0 98583 0.261 -1 WSFESICLVL 10 40 627.3151550790767 1252.6157572249533 2 627.3154907226562 MULTI HCD FTMS 0 0 0 21854 92232.734375 0.6475032071339603 -3 0.08521270751953125 4 Carbamidomethyl (C) _WSFESIC(Carbamidomethyl (C))LVL_ ENSG00000019186|ENST00000216862|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;nc|ENSG00000019186|Q07973-3|CYP24A1 6.2057823575117 0.44245551207394906 2 {I|L}V{I|L} 3 -1 30.445 0 0 2.4305 0 0 909.3707142560562 0 909.3707142560562 0 27.346368802282015 0 0 0 0.4247425010840047 0 0 0 {I|L}V{I|L} 2.4305 + + 9 NaN NaN 141706.2 NaN 17622 4234 21854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21859 88.411 NaN 118040 35 0 13515 0.264 + 20712 PFTQRGHI 8 51 478.25933865646715 954.5041243797343 2 478.2585754394531 MULTI HCD FTMS 0 0 0 21854 56422.86328125 0.5518779914040892 -5 0.13755035400390625 5 Unmodified _PFTQRGHI_ ENSG00000188177|ENST00000409871|ZC3H6 16.942295170755138 0.46913822049235215 2 E{I|L}TPE 5 7 42.435 0 0 4.4458 0 0 367.20701796699376 0 367.20701796699376 0 24.47621246364342 0 0 0 0.5 0 0.4247425010840047 0 E{I|L}TPE 4.4458 - 22 NaN NaN 105775.1 NaN 17623 4234 21854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21861 88.415 NaN 1263000 35 0 221160 0.327 -1 0 105 611.3561023151733 1220.6976516971465 2 611.3560180664062 MULTI HCD FTMS 0 0 0 21860 481243.25 0.3353101231023467 21 -0.50299072265625 1 NaN NaN 2 T{[SA]|[TG]} 3 -1 11.611 0 0 0.95119 0 0 943.5503407209 0 943.5503407209 0 3.8469307278007054 0 0 0 0.3494850021680094 0 0.3054621874040891 0 T{[SA]|[TG]} 0.95119 - 71 NaN NaN 278368.8 NaN 17624 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21862 88.42 NaN 603660 35 0 55463 0.261 + 2840 DYLFKVVLI 9 83 555.3337960322299 1108.6530391312597 2 555.333984375 MULTI HCD FTMS 0 0 0 21860 330136.96875 0.5133678293900105 -4 0.10483551025390625 2 Unmodified _DYLFKVVLI_ ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B 63.960520009940105 0.0120409805053046 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 9 0 + 92.066 0 0 8.3043 8.3043 96.238 0 0 0 20.21627694427883 16.478174818886373 16.478174818886373 31.10924374808178 0 2.5356668758921828 1.6989700043360187 0.28872548999643577 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{I|L}VVK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KV{I|L}{I|L}V;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{I|L}VV{I|L}K;[{M(Oxidation (M))|F}E][YV]KVV{I|L}{I|L};[{M(Oxidation (M))|F}V][YE]KVV{I|L}{I|L};[{M(Oxidation (M))|F}E][YV]{I|L}VVK{I|L};[{M(Oxidation (M))|F}E][YV]KV{I|L}{I|L}V;[{M(Oxidation (M))|F}V][YE]{I|L}VVK{I|L};[{M(Oxidation (M))|F}V][YE]KV{I|L}{I|L}V 8.3043;5.4983;5.3787;4.536;3.7557;3.5787;0.94969;0.83012;0.77263;0.65307 +;-;-;-;-;-;-;-;-;- + 790 NaN NaN 181069.8 NaN 17625 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21863 88.423 NaN 297360 35 0 69182 0.262 + 16689 LWTDELEWN 9 57 603.2779081140474 1204.5412632948946 2 603.2782592773438 MULTI HCD FTMS 0 0 0 21860 202207.890625 0.8988283210996659 3 -0.08176422119140625 3 Unmodified _LWTDELEWN_ REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF 24.020572477871973 0.15282392193088168 2 {I|L}WDET 5 -1 71.088 0 0 5.9017 0 0 0 557.2391395893893 557.2391395893893 45.11922997584469 0 0 0 0 1.2887254899964358 1.6989700043360187 0.3252574989159953 0 {I|L}WDET 5.9017 - 164 + NaN NaN 137717.2 NaN 17626 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21864 88.427 NaN 307700 35 0 131990 0.261 -1 0 64 606.3694787228364 1210.7244045124728 2 606.3699340820312 MULTI HCD FTMS 0 0 0 21860 200932.640625 0.2707800498584245 11 -0.23763275146484375 4 NaN NaN 2 [Y{I|L}][KS][{M(Oxidation (M))|F}T]E 7 -1 11.495 0 0 0.94944 0 0 0 339.3084858935853 339.3084858935853 4.505369237630177 0 0 0 0 0 2 0 0 [Y{I|L}][KS][{M(Oxidation (M))|F}T]E 0.94944 - 27 NaN NaN 156749.6 NaN 17627 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21865 88.43 NaN 276690 35 0 34139 0.261 -1 WPSLLGDML 9 51 524.2625913095783 1046.5106296859565 2 524.26220703125 MULTI HCD FTMS 0 0 0 21860 108355.484375 0.5116292298261261 11 -0.23763275146484375 5 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 25.399314129420986 0.14091189997036632 2 TA{M(Oxidation (M))|F}{I|L} 4 -1 41.938 0 0 4.0074 0 0 596.3321830964708 0 596.3321830964708 0 34.463950151760656 0 0 0 1 0 0 0 TA{M(Oxidation (M))|F}{I|L} 4.0074 - 28 NaN NaN 129966.9 NaN 17628 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21866 88.433 NaN 316950 35 0 16948 0.261 -1 0 99 567.3303563093277 1132.6461596854554 2 567.3301391601562 MULTI HCD FTMS 0 0 0 21860 103182.953125 0.024610342672756268 79 -1.9418792724609375 6 NaN NaN 2 [{I|L}T][NP][DG]GWS 9 -1 17.315 0 0 1.5287 0 0 0 202.17801313446992 202.17801313446992 1.1169621045833509 0 0 0 0 0 2 0 0 [{I|L}T][NP][DG]GWS 1.5287 - 683 NaN NaN 143369.4 NaN 17629 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21867 88.437 NaN 133270 35 0 6532 0.261 + -1 YRIMLLVIFV 10 61 641.8825471420536 1281.750541350907 2 641.8826293945312 MULTI HCD FTMS 0 0 0 21860 114795.84375 0.3658192582690235 -10 0.26557159423828125 7 Oxidation (M) _YRIM(Oxidation (M))LLVIFV_ REV__ENSG00000128011|ENST00000248668|LRFN1 1.6526216038709556 0.46655611578153744 2 W 1 -1 3.9794 0 0 0.31047 0 0 671.4039359815696 421.25531946353755 1092.6592554451072 0 0 0 0 0 0 0 0 0 W 0.31047 - 18 + NaN NaN 110485 NaN 17630 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21868 88.44 NaN 259520 35 0 28004 0.261 + 36001 YYYVGFAYL 9 61 579.7789502664996 1157.543347599799 2 579.7777709960938 MULTI HCD FTMS 0 0 0 21860 54484.58984375 0.0952480961381925 11 -0.23763275146484375 8 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 36.466142684027034 0.08156716203802528 2 AY{I|L} 3 6 29.481 0 0 2.5469 0 0 792.3476828298253 0 792.3476828298253 0 14.877203139966326 0 0 0 0.805462187404089 0 0 0 + AY{I|L} 2.5469 + + 49 NaN NaN 142777.4 NaN 17631 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21869 88.443 NaN 71800 35 0 5395.1 0.261 -1 VMTRKKIMK 9 44 575.8430938105198 1149.6716346878395 2 575.8431396484375 MULTI HCD FTMS 0 0 0 21860 55201.08984375 0.1607458367659348 29 -0.685882568359375 9 Oxidation (M) _VMTRKKIM(Oxidation (M))K_ ENSG00000213085|ENST00000368099|CFAP45;nc|ENSG00000213085|Q9UL16-2|CFAP45 0.6014990680409731 0.3464572424761564 2 W 1 -1 4.6041 0 0 0.40047 0 0 312.28236574428325 648.3034762018186 960.5858419461019 0 0 0 0 0 0 0 0 0 W 0.40047 - 17 + NaN NaN 120693.5 NaN 17632 4235 21860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21871 88.448 NaN 1992800 35 0 442160 0.327 + 23617 RPLEGLLLQ 9 76 519.8183070797171 1037.622061226234 2 519.8182373046875 MULTI HCD FTMS 0 0 0 21870 202224 0.4357802455861981 4 -0.091339111328125 1 Unmodified _RPLEGLLLQ_ ENST00000554944.5_1_9:34646701-34647660:+|nuORF 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F} 1 9 16.99 0 0 1.6374 0 0 872.5434307104123 0 872.5434307104123 0 0.7918124604762475 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6374 - 198 + NaN NaN 404977.1 NaN 17633 4236 21870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21872 88.453 NaN 297760 35 0 37783 0.262 -1 0 55 412.1753730997742 822.3361932663485 2 412.1756896972656 MULTI HCD FTMS 0 0 0 21870 174717.171875 0.026181128913877645 26 -0.5939102172851562 2 NaN NaN 2 {I|L} 1 -1 10.797 0 0 1.313 0 0 155.0947750087434 551.1353265001346 706.2301015088781 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 1.313 - 9 + NaN NaN 132862 NaN 17634 4236 21870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21873 88.456 NaN 355850 35 0 51280 0.261 + -1 MADEYEIIF 9 63 573.7545172530553 1145.4944815729104 2 573.7548828125 MULTI HCD FTMS 0 0 0 21870 130375.5 0.8726363661653489 -3 0.078582763671875 3 Oxidation (M) _M(Oxidation (M))ADEYEIIF_ REV__ENSG00000091129|ENST00000379028|NRCAM;REV__nc|ENSG00000091129|Q92823-2|NRCAM;REV__nc|ENSG00000091129|Q92823-3|NRCAM;REV__nc|ENSG00000091129|Q92823-4|NRCAM;REV__nc|ENSG00000091129|Q92823-5|NRCAM;REV__nc|ENSG00000091129|Q92823-6|NRCAM;REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant 28.486842064014134 0.11819662193267319 2 {I|L}E{I|L}{M(Oxidation (M))|F} 4 -1 55.235 0 0 4.8219 0 0 625.2071400373062 0 625.2071400373062 0 49.03720958383822 0 0 0 1.7302046884880937 0 0.75 0 {I|L}E{I|L}{M(Oxidation (M))|F} 4.8219 - 232 NaN NaN 137921.2 NaN 17635 4236 21870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21874 88.46 NaN 162490 35 0 23821 0.261 + 5260 FFDSVQVVF 9 49 544.2766442276525 1086.5387355221048 2 544.2765502929688 MULTI HCD FTMS 0 0 0 21870 53705.39453125 0.074148598859959 12 -0.25698089599609375 4 Unmodified _FFDSVQVVF_ ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF 36.12702656103203 0.08312389501731911 2 VVQ[EC]VV{M(Oxidation (M))|F} 8 6 53.448 0 0 4.9191 0 0 165.07817123389003 0 165.07817123389003 0 37.250547101681875 0 0 0 0.5 0 0.7302046884880937 0 VVQ[EC]VV{M(Oxidation (M))|F} 4.9191 - 112 + NaN NaN 114185 NaN 17636 4236 21870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21875 88.463 NaN 119730 35 0 14430 0.261 + 19263 NLLPLPYL 8 44 471.7867388344017 941.5589247356035 2 471.7868347167969 MULTI HCD FTMS 0 0 0 21870 25852.447265625 0.08916273239582652 12 -0.25698089599609375 5 Unmodified _NLLPLPYL_ REV__ENSG00000125618|ENST00000429538|PAX8;REV__nc|ENSG00000125618|Q06710-2|PAX8;REV__nc|ENSG00000125618|Q06710-3|PAX8 13.50788311687929 0.4944073034352369 2 V{I|L} 2 -1 20.969 0 0 2.2271 0 0 711.3979359357437 0 711.3979359357437 0 7.016675202793719 0 0 0 0 0 0 0 V{I|L} 2.2271 - 9 NaN NaN 111258.2 NaN 17637 4236 21870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21876 88.466 NaN 104850 35 0 10999 0.261 + 34095 YNLVLMLQLH 10 50 622.3472353514519 1242.6799177697037 2 622.3474731445312 MULTI HCD FTMS 0 0 0 21870 19955.455078125 0.3931442433872825 -2 0.0524139404296875 6 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 2 [YN]{I|L}R 4 -1 26.287 0 0 2.1153 0 0 0 693.3629371390974 693.3629371390974 10.088643834802156 0 0 0 0 0 2 0 0 [YN]{I|L}R 2.1153 - 43 NaN NaN 108861.7 NaN 17638 4236 21870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21878 88.471 NaN 436230 35 0 20978 0.326 -1 0 92 633.3692215381826 1264.7238901431651 2 633.3693237304688 MULTI HCD FTMS 0 0 0 21877 464674.375 0.7195744489752622 -4 0.10143280029296875 1 NaN NaN 2 Q 1 -1 7.7642 0 0 0.61391 0 0 678.4061544027339 455.24949060611567 1133.6556450088497 0 0 0 0 0 0.5 0 0 0 Q 0.61391 - 65 + NaN NaN 149513.7 NaN 17639 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21879 88.476 NaN 487880 35 0 19279 0.261 + 16016 LPRVCPPASLF 11 85 600.3341475384078 1198.6537421436155 2 600.3341064453125 MULTI HCD FTMS 0 0 0 21877 141945.859375 0.43013061772948535 -8 0.2128143310546875 2 Unmodified _LPRVCPPASLF_ REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF 5.296884461304476 0.39569033063702824 2 YY[{I|L}V]TTDC(Carbamidomethyl (C)) 8 -1 19.575 0 0 1.6331 0 0 0 180.16475815831066 180.16475815831066 16.810815347326237 0 0 0 0 0 1.5228787452803376 0.2742275032520141 0 YY[{I|L}V]TTDC(Carbamidomethyl (C)) 1.6331 - 524 NaN NaN 185740.8 NaN 17640 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21880 88.479 NaN 259500 35 0 15589 0.261 -1 0 79 619.8694371811132 1237.7243214290263 2 619.8695678710938 MULTI HCD FTMS 0 0 0 21877 229898.40625 0.7998678982392412 -2 0.05564117431640625 3 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.56472 0 0 637.4361665968443 484.1831719523685 1121.619338549213 0 0 0 0 0 0 0 0 0 {I|L} 0.56472 - 18 + NaN NaN 137416.8 NaN 17641 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21881 88.482 NaN 355650 35 0 42587 0.261 + 16550 LTSMSLCTLF 10 63 558.2795526647093 1114.5445523962185 2 558.2666625976562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LTSMSLCTLF_ REV__ENST00000604822.1_1_4:153268030-153273825:-|nuORF;REV__nc|ENSG00000109670|Q969H0-2|FBXW7 10.823927491677226 0.4098686510432541 2 [{I|L}T][MD]D 5 -1 21.707 0 0 1.9476 0 0 0 536.3001425663934 536.3001425663934 5.789361924808247 0 0 0 0 0 2 0 0 [{I|L}T][MD]D 1.9476 - 550 NaN NaN 148923.8 NaN 17642 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21882 88.486 NaN 128680 35 0 25672 0.261 + 3264 EEAFMMSFY 9 43 577.7328008671383 NaN 0 577.7333984375 PEAK HCD FTMS 0 0 0 21877 19129.779296875 0.3660740902535895 1 -0.026123046875 5 Unmodified _EEAFMMSFY_ REV__ENSG00000112365|ENST00000230122|ZBTB24;REV__nc|ENSG00000112365|O43167-2|ZBTB24;REV__ZBTB24|p.L509Ffs*5|1|0.2|ENSG00000112365|chr6:109466418-109466419|-/A|frameshift_variant 1.844237919475145 0.28630992268396543 2 V 1 -1 1.9897 0 0 0.1725 0 0 594.1884888418953 457.17405115299067 1051.362539994886 0 0 0 0 0 0 0 0 0 V 0.1725 - 3 + NaN NaN 141484.6 NaN 17643 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21883 88.489 NaN 123350 35 0 16405 0.261 + -1 FCKVLFLC 8 47 515.2653152453951 NaN 0 515.2491455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _FCKVLFLC(Carbamidomethyl (C))_ REV__ENSG00000133789|ENST00000318950|SWAP70;REV__ENST00000524817.5_1_11:9685687-9762009:+|nuORF;REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF 2.8892196856762586 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.67959 0 0 113.11763301017432 799.2936345340646 912.411267544239 0 0 0 0 0 0 0 0 0 {I|L} 0.67959 + + 4 + NaN NaN 125403.5 NaN 17644 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21884 88.492 NaN 189560 35 0 49533 0.261 + 4946 FAQHQARL 8 57 485.76487813177954 969.5152033303591 2 485.7649230957031 MULTI HCD FTMS 0 0 0 21877 32718.513671875 0.08949923895178623 9 -0.1819915771484375 7 Unmodified _FAQHQARL_ REV__ENSG00000215910|ENST00000688073|C1orf167;REV__nc|nan|Q5SNV9-2|C1orf167;REV__nc|nan|Q5SNV9-3|C1orf167 13.50788311687929 0.4944073034352369 2 SMA 3 -1 28.188 0 0 2.9074 0 0 0 677.3481539361936 677.3481539361936 8.344537511509312 0 0 0 0 0.5 0 0 0 SMA 2.9074 - 39 + NaN NaN 139483.2 NaN 17645 4237 21877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21886 88.497 NaN 2554900 35 0 193010 0.326 -1 0 119 589.3431318065191 1176.671710679838 2 589.3434448242188 MULTI HCD FTMS 0 0 0 21885 2441410.25 0.4872216121611313 14 -0.302886962890625 1 NaN NaN 2 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 -1 13.589 0 0 1.1548 0 0 546.3261481676591 0 546.3261481676591 0 0.7744657025086994 0 0 0 0.6989700043360187 0 0.49164406112826264 0 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.1548 - 1387 + NaN NaN 421531.9 NaN 17646 4238 21885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21887 88.502 NaN 1579100 35 0 230800 0.261 + 10885 IWDETPLYF 9 82 592.2868806334895 1182.559208333779 2 592.2869262695312 MULTI HCD FTMS 0 0 0 21885 848838.6875 0.362980688024022 8 -0.1558685302734375 2 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 112.59319219568356 0.00251905749371435 2 [W{I|L}]DETP{I|L}Y{M(Oxidation (M))|F} 9 0 + 80.856 0 0 6.8374 6.8374 93.086 0 0 0 4.762036441594191 62.2729783057342 4.762036441594191 22.532059605518313 0 2.504432191740108 0 1.1989700043360187 0 + + [W{I|L}]DETP{I|L}Y{M(Oxidation (M))|F};[YV]{I|L}YT{[QS]|[NT]}Y{M(Oxidation (M))|F};Q{[TV]|[{I|L}S]}{I|L}PT{[QS]|[NT]}Y{M(Oxidation (M))|F};E{[RE]|[WV]}ETP{I|L}Y{M(Oxidation (M))|F};Q{[TV]|[{I|L}S]}{[QS]|[NT]}TY{I|L}P{M(Oxidation (M))|F};E{[RE]|[WV]}ETY{I|L}P{M(Oxidation (M))|F};{[HG]|PP}[YG]ETP{I|L}Y{M(Oxidation (M))|F};[W{I|L}]DETP[Y{M(Oxidation (M))|F}]{I|L};{[HG]|PP}[YG]ETY{I|L}P{M(Oxidation (M))|F};[NP]T{I|L}{I|L}T{[QS]|[NT]}Y{M(Oxidation (M))|F} 6.8374;4.9321;4.7866;4.5055;4.4672;4.232;3.9144;3.6878;3.6409;3.461 +;-;-;-;-;-;-;-;-;- + 1288 NaN NaN 346395.2 NaN 17647 4238 21885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21888 88.505 NaN 712630 35 0 58114 0.261 + 28139 TIPDLDWEL 9 76 551.2769218690398 1100.5392908048796 2 551.27734375 MULTI HCD FTMS 0 0 0 21885 323472.75 0.5147184995527161 10 -0.2080078125 3 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 96.28474662873226 0.004361282420133734 2 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 65.217 0 0 5.9259 5.9259 89.647 0 0 0 11.262874945799766 16.478174818886373 11.262874945799766 11.262874945799766 0 2.0994850021680094 2 1.3129529932484498 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};[VP]ED[{I|L}T]WE{I|L};[{I|L}T]YE[PA][DP][VP];[VP]ED[WE]{I|L}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}[DP][VP];{[QN]|[E{I|L}]|[KN]}[R{I|L}][NP]V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 5.9259;4.9025;4.1539;3.5119;2.4892;2.1206;1.738;0.74565 +;-;-;-;-;-;-;- + 609 NaN NaN 214245.3 NaN 17648 4238 21885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21889 88.509 NaN 396250 35 0 50989 0.261 -1 TLHDLETFM 9 62 561.7626611359957 NaN 0 561.7808227539062 PEAK HCD FTMS 0 0 0 21885 8875.7724609375 1 0 0 4 Oxidation (M) _TLHDLETFM(Oxidation (M))_ ENSG00000112031|ENST00000367233|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;nc|ENSG00000112031|Q9UGC7-3|MTRF1L 11.640296217721598 0.23883959125015683 2 {M(Oxidation (M))|F}V{I|L} 3 -1 16.198 0 0 1.4443 0 0 165.04516182997446 594.2250460260374 759.2702078560119 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V{I|L} 1.4443 - 26 + NaN NaN 155236.5 NaN 17649 4238 21885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21890 88.512 NaN 201990 35 0 44157 0.261 + 16249 LPYTATIEDIL 11 47 624.8396489230074 1247.6647449128147 2 624.8399047851562 MULTI HCD FTMS 0 0 0 21885 77347.515625 0.30048989000905796 4 -0.08141326904296875 5 Unmodified _LPYTATIEDIL_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 7.608950283845883 0.38555039536024605 2 ED{I|L}{I|L} 4 7 28.928 0 0 2.3186 0 0 759.4164906232437 0 759.4164906232437 0 15.740312677277188 0 0 0 0 0 0 0 + ED{I|L}{I|L} 2.3186 + + 61 NaN NaN 128978.8 NaN 17650 4238 21885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21892 88.517 NaN 1613200 35 0 243450 0.327 + 8306 GYADIVQLL 9 62 496.27647656720546 990.538400201211 2 496.27667236328125 MULTI HCD FTMS 0 0 0 21891 976852.4375 0.39101625044030996 6 -0.12676239013671875 1 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 126.56589448801843 0.0008132384440316759 2 [YG]AD{I|L}VQ{I|L}{I|L} 9 0 + 103.73 0 0 10.472 10.472 94.432 0 0 0 16.549471895720984 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6989700043360187 1.5228787452803376 1.4674165578762484 0 + + [YG]AD{I|L}VQ{I|L}{I|L};[YG]AD{I|L}V[AG]{I|L}{I|L};[YQ]D{I|L}VQ{I|L}{I|L};[YQ]D{I|L}V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]VQ{I|L}{I|L};[Q{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}VQ{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YE]V[AG]{I|L}{I|L};[YG]A[PA]{I|L}SS{I|L}{I|L};[Q{I|L}]{[YD]|[{M(Oxidation (M))|F}M]}V[AG]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}Q{I|L}{I|L} 10.472;9.542;8.1553;7.2202;6.0125;5.641;5.0775;4.8656;4.706;4.5916 +;-;-;-;-;-;-;-;-;- + 422 NaN NaN 336514.4 NaN 17651 4239 21891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21893 88.521 NaN 1053600 35 0 231370 0.261 + 6864 FPTLEITL 8 50 467.26824822053845 932.5219435078769 2 467.2682189941406 MULTI HCD FTMS 0 0 0 21891 801839.1875 1 0 0 2 Unmodified _FPTLEITL_ ENSG00000183508|ENST00000369448|TENT5C 81.86404211737425 0.01600015972391505 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}E{I|L}T{I|L} 8 0 + 63.07 0 0 6.7634 6.7634 87.964 0 0 0 6.694699959806982 6.694699959806982 6.694699959806982 6.694699959806982 0 1.8182503180159344 1.2218487496163564 0.805462187404089 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L}E{I|L}T{I|L};[YV][VP]E{I|L}T{I|L} 6.7634;6.0455 +;- + 129 NaN NaN 246472.5 NaN 17652 4239 21891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21894 88.525 NaN 631260 35 0 84815 0.261 + 6387 FPGFFSPML 9 59 529.7545857079988 1057.4946184827975 2 529.7545776367188 MULTI HCD FTMS 0 0 0 21891 295018.65625 0.8276987475798576 4 -0.08478546142578125 3 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 70.71552829651908 0.008856681705782516 2 {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5 4 59.24 0 0 5.6019 0 0 448.2103289140827 0 448.2103289140827 0 51.28144697160131 0 0 0 1.3494850021680094 0 1.2302046884880937 0 + {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5.6019 + + 137 NaN NaN 200963.9 NaN 17653 4239 21891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21895 88.528 NaN 336690 35 0 46268 0.261 + 17923 MILELDPTF 9 51 539.7781045038707 1077.5416560745414 2 539.7783813476562 MULTI HCD FTMS 0 0 0 21891 156332.4375 0.0864804012898008 14 -0.31290435791015625 4 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 81.61307344734483 0.005330412723537057 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 9 2 + 88.171 0 0 8.1826 8.1826 97.57 0 0 0 23.881580146315784 81.18108131561996 23.881580146315784 88.17078135898015 0 2.2302046884880937 2 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 8.1826 - 143 NaN NaN 152291.1 NaN 17654 4239 21891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21896 88.531 NaN 265940 35 0 144270 0.261 -1 0 59 565.317888893513 564.3106124269129 1 565.31787109375 MULTI HCD FTMS 0 0 0 21891 254955.875 0.7132648521367247 -3 0.0684814453125 5 NaN NaN 2 G 1 -1 2.4743 0 0 0.43846 0 0 81.56175486030982 422.70432459049067 504.2660794508005 0 0 0 0 0 0 0 0 0 G 0.43846 - 5 + NaN NaN 128961.9 NaN 17655 4239 21891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21897 88.535 NaN 72772 35 0 8673.3 0.263 + 14419 LELSTGTE 8 42 425.21477428986134 NaN 0 425.2147216796875 PEAK HCD FTMS 0 0 0 21891 35171.88671875 0.7269167477962215 28 -0.6633071899414062 6 Unmodified _LELSTGTE_ REV__ENST00000287169.7_1_11:57439559-57439610:+|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106761.9 NaN 17656 4239 21891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21899 88.54 NaN 1269400 35 0 45304 0.327 -1 0 126 597.8563626585645 1193.698172383929 2 597.8563842773438 MULTI HCD FTMS 0 0 0 21898 1340602.375 0.4709177373401784 16 -0.3788604736328125 1 NaN NaN 2 W 1 -1 12.764 0 0 1.0693 0 0 989.6086318339275 0 989.6086318339275 0 2.1652660518469347 0 0 0 0 0 0 0 W 1.0693 - 842 + NaN NaN 285497.8 NaN 17657 4240 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21900 88.544 NaN 330390 35 0 65408 0.263 + 4846 FAADIISVL 9 42 474.77374910791224 947.5329452826245 2 474.77374267578125 MULTI HCD FTMS 0 0 0 21898 180925.09375 0.08566019033194401 12 -0.26052093505859375 2 Unmodified _FAADIISVL_ ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF 37.97399986684836 0.07464525285885698 2 {I|L}SV{I|L} 4 5 53.928 0 0 5.6914 0 0 517.2529268096854 0 517.2529268096854 0 42.133198788756516 0 0 0 1.3494850021680094 0 0.8494850021680094 0 + {I|L}SV{I|L} 5.6914 + + 98 NaN NaN 134485.4 NaN 17658 4240 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21901 88.548 NaN 417290 35 0 89007 0.261 + -1 MTGNKDMSKLI 11 43 627.3151550790767 1252.6157572249533 2 627.3157348632812 MULTI HCD FTMS 0 0 0 21898 100688.4921875 0.7068653234090888 3 -0.06192779541015625 3 Oxidation (M) _M(Oxidation (M))TGNKDMSKLI_ REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25;REV__nc|ENSG00000148339|Q6KCM7|SLC25A25 7.101721422024254 0.3877749288398915 2 V{I|L} 2 -1 25.217 0 0 2.0131 0 0 1022.4535590045779 0 1022.4535590045779 0 15.511525224473816 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.0131 - 8 NaN NaN 150742.6 NaN 17659 4240 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21902 88.551 NaN 166140 35 0 16116 0.261 + 25592 SFVPYTWNF 9 60 580.773857469536 1159.5331620058719 2 580.7737426757812 MULTI HCD FTMS 0 0 0 21898 38463.47265625 0.5650329190605532 1 -0.01621246337890625 4 Unmodified _SFVPYTWNF_ ENSG00000138688|ENST00000679879|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1 22.736283301280096 0.1639198954644489 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VRA 5 6 40.713 0 0 3.5112 0 0 0 596.2148996369843 596.2148996369843 28.26606256887672 0 0 0 0 0.5 1.6989700043360187 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VRA 3.5112 - 196 NaN NaN 117195.2 NaN 17660 4240 21898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21904 88.556 NaN 1444000 35 0 135880 0.327 + 16975 LYIENQFFI 9 89 593.8103703069048 1185.6061876806095 2 593.8108520507812 MULTI HCD FTMS 0 0 0 21903 731691.1875 0.9636791829635352 -2 0.03907012939453125 1 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 147.05914393524117 1.1935124485855994E-05 2 [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 104.28 0 0 8.7959 8.7959 93.131 0 0 0 18.741436528314566 77.67249551758132 18.741436528314566 9.208187539523749 0 2.7302046884880937 1.3979400086720375 0.2742275032520141 1.5189301784845295 + + [Y{I|L}]{I|L}ENQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGGQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EN{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]{I|L}T[SG]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L};[Y{I|L}]{I|L}EGG{M(Oxidation (M))|F}{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}[QP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}][YV]E[QP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 8.7959;8.0192;7.7757;5.9651;3.9868;2.9948;2.9666;1.64;1.1764 +;-;-;-;-;-;-;-;- + 2240 NaN NaN 323692.9 NaN 17661 4241 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21905 88.56 NaN 791050 35 0 52734 0.261 + 28643 TRLYLKQKAT 10 101 611.3721927504437 NaN 0 611.3561401367188 PEAK HCD FTMS 0 0 0 21903 32969.5859375 0.6802907830834994 -8 0.18613433837890625 2 Unmodified _TRLYLKQKAT_ REV__ENSG00000244414|ENST00000320493|CFHR1 2.9952420565917617 0.3376207769591857 2 T 1 -1 4.8464 0 0 0.39701 0 0 176.13868941786887 940.5275972955686 1116.6662867134376 0 0 0 0 0 0 0 0.3252574989159953 0 T 0.39701 + + 31 + NaN NaN 211025.3 NaN 17662 4241 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21906 88.564 NaN 765880 35 0 99978 0.261 + 2841 DYLFKVVLI 9 85 555.3337960322299 1108.6530391312597 2 555.3340454101562 MULTI HCD FTMS 0 0 0 21903 490543.84375 0.7628028731228543 2 -0.04571533203125 3 Unmodified _DYLFKVVLI_ ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B 82.5293158979368 0.005033931517079822 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 9 0 + 105.33 0 0 9.5009 9.5009 95.73 0 0 0 24.508023872519956 16.478174818886373 16.478174818886373 13.851518780601921 0 2.7302046884880937 1.6989700043360187 0.9436726795685342 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KV{I|L}V{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KV{I|L}{I|L}V;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}K{I|L}VV{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{I|L}KVV{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}K{I|L}V{I|L}V;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{I|L}VVK{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{I|L}KV{I|L}V;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{I|L}VV{I|L}K;{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[YD]|[{M(Oxidation (M))|F}M]}VV{I|L}{I|L} 9.5009;8.2515;7.2344;7.1776;6.1836;6.1605;5.6658;5.1665;4.9202;4.2902 +;-;-;-;-;-;-;-;-;- + 862 NaN NaN 222527.4 NaN 17663 4241 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21907 88.567 NaN 321960 35 0 149750 0.261 -1 0 50 606.3694151439407 1210.7242773546814 2 606.3697509765625 MULTI HCD FTMS 0 0 0 21903 383581.6875 0.8609861073506326 -2 0.03907012939453125 4 NaN NaN 2 P 1 -1 4.6041 0 0 0.38028 0 0 644.4026353642502 466.2378328912719 1110.6404682555221 0 0 0 0 0 0 0 0 0 P 0.38028 - 12 + NaN NaN 138835.2 NaN 17664 4241 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21908 88.57 NaN 199950 35 0 19650 0.261 -1 TTMTTALVPP 10 53 524.2730876910707 NaN 0 524.2626953125 PEAK HCD FTMS 0 0 0 21903 12635.193359375 0.7166134144958154 2 -0.04571533203125 5 Oxidation (M) _TTM(Oxidation (M))TTALVPP_ ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ADGRG4|p.P1831Kfs*16|1|0.04|ENSG00000156920|chrX:136349195-136349196|-/TAAAGCTAGTCAG|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4 6.723162845929126 0.3344301934401713 2 {M(Oxidation (M))|F}DG 3 -1 11.427 0 0 1.0919 0 0 131.11714447131436 593.3086727969483 724.4258172682626 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}DG 1.0919 - 23 + NaN NaN 124359.6 NaN 17665 4241 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21909 88.574 NaN 140670 35 0 13384 0.261 + 20713 PFTQRGHI 8 46 478.25933865646715 954.5041243797343 2 478.76141357421875 MULTI HCD FTMS 0 0 0 21903 40734.25390625 0.6105870893119187 -2 0.03907012939453125 6 Unmodified _PFTQRGHI_ ENSG00000188177|ENST00000409871|ZC3H6 23.1484247019978 0.4234759064137959 2 E{I|L}TPE 5 7 39.425 0 0 4.1304 0 0 367.2072010724625 0 367.2072010724625 0 19.247425010840047 0 0 0 0.5 0 0.4247425010840047 0 E{I|L}TPE 4.1304 - 52 NaN NaN 105887.7 NaN 17666 4241 21903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21911 88.579 NaN 203940 35 0 11637 0.327 + 25787 SLLALPTQQRR 11 83 641.8825471420536 1281.750541350907 2 641.8822631835938 MULTI HCD FTMS 0 0 0 21910 228700.171875 0.7287975287982558 -3 0.0619049072265625 1 Unmodified _SLLALPTQQRR_ ENST00000564152.1_1_22:47158257-47158401:-|nuORF 4.897010918128616 0.3974440401582579 2 D 1 11 6.9897 0 0 0.54532 0 0 193.1314219318486 970.5472506158811 1163.6786725477298 0 0 0 0 0 0 0 0.3494850021680094 0 D 0.54532 - 56 + NaN NaN 117680.9 NaN 17667 4242 21910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21912 88.583 NaN 201770 35 0 37934 0.262 + 26810 SYIDVLPEF 9 35 541.7735964772074 1081.5326400212148 2 541.7738037109375 MULTI HCD FTMS 0 0 0 21910 58883.4453125 0.39026754554021725 2 -0.03578948974609375 2 Unmodified _SYIDVLPEF_ ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET 26.88365393820708 0.12808753336095696 2 {I|L}[EP]{M(Oxidation (M))|F} 4 5 30.005 0 0 2.7743 0 0 577.2738649881074 0 577.2738649881074 0 24.5205343810445 0 0 0 1.3807196863200843 0 0 0 + {I|L}[EP]{M(Oxidation (M))|F} 2.7743 + + 23 NaN NaN 114326.4 NaN 17668 4242 21910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21913 88.587 NaN 87839 35 0 4592 0.261 + 23337 RKIPVIMFF 9 53 575.843149791243 1149.671746649286 2 575.8429565429688 MULTI HCD FTMS 0 0 0 21910 62137.26171875 0.5717675806481064 -3 0.0619049072265625 3 Unmodified _RKIPVIMFF_ ENST00000367941.6_1_6:132781824-132781866:-|nuORF 0.6014990680409731 0.3464572424761564 2 Y 1 9 5.4846 0 0 0.47705 0 0 498.34086418226894 485.2424410455688 983.5833052278377 0 0 0 0 0 0 0 0 0 Y 0.47705 - 8 + NaN NaN 108643.3 NaN 17669 4242 21910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21914 88.59 NaN 163980 35 0 32202 0.264 -1 0 48 404.12106587342913 806.2275788136583 2 404.1208190917969 MULTI HCD FTMS 0 0 0 21910 44500.6953125 0.5974248204108846 -2 0.0390472412109375 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.764 0 0 1.5832 0 0 641.1492382148286 0 641.1492382148286 0 12.764209843288903 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5832 - 3 + NaN NaN 127144.5 NaN 17670 4242 21910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21915 88.593 NaN 86170 35 0 29435 0.261 -1 0 34 509.39488892566993 508.38761245906994 1 512.4041137695312 MULTI HCD FTMS 0 0 0 21910 21478.2890625 0.4787954551352127 3 -0.06485748291015625 5 NaN NaN 2 A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 3 -1 7.4473 0 0 1.4649 0 0 162.22389893543556 0 162.22389893543556 0 7.447274948966937 0 0 0 0 0 0 0 A{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.4649 - 6 + NaN NaN 105652.3 NaN 17671 4242 21910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21916 88.597 NaN 79748 35 0 16896 0.261 + 34029 YMRWKMEQW 9 40 453.20970195601444 NaN 0 453.2095031738281 PEAK HCD FTMS 0 0 0 21910 9410.96484375 0.25855478255736897 -17 0.42874908447265625 6 Unmodified _YMRWKMEQW_ ENSG00000189362|ENST00000409150|NEMP2 1.1933415558491238 0.28946407562688115 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102210.7 NaN 17672 4242 21910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21918 88.602 NaN 704500 35 0 79831 0.327 + 32312 VYVDFEGINF 10 90 601.7899926114316 1201.565432289663 2 601.7901000976562 MULTI HCD FTMS 0 0 0 21917 365374.46875 0.38769280466706946 -6 0.1304168701171875 1 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 160.6895995991744 8.96468530761412E-11 2 [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 10 0 + 113.38 0 0 9.4357 9.4357 95.476 0 0 0 14.78212456070274 14.78212456070274 14.78212456070274 12.971736348700105 0 3.048455006504028 1.3010299956639813 1.2708865128625186 0.3807196863200844 + + [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EVAN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}T]{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YG][KT]E{M(Oxidation (M))|F}DVP{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}NP{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PGG{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[YV]VEG{I|L}N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[{I|L}T]{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F} 9.4357;8.3561;8.2054;7.104;6.6374;6.3589;6.0674;6.0244;5.7403;5.5579 +;-;-;-;-;-;-;-;-;- + 2675 NaN NaN 196053.3 NaN 17673 4243 21917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21919 88.606 NaN 435490 35 0 54852 0.262 + 32191 VYTDILIGL 9 54 503.7948189652341 1005.5750849972682 2 503.79461669921875 MULTI HCD FTMS 0 0 0 21917 136782.03125 0.4701928241486733 -2 0.04571533203125 2 Unmodified _VYTDILIGL_ DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37 34.10243960390752 0.09241788333544565 2 {I|L}{I|L}{I|L}G{I|L} 5 4 49.38 0 0 4.9107 0 0 478.205858299025 0 478.205858299025 0 34.776296993281406 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}{I|L}G{I|L} 4.9107 + + 30 NaN NaN 152323 NaN 17674 4243 21917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21920 88.61 NaN 114570 35 0 14547 0.261 -1 MLRIPQPLIM 10 53 622.3472353514519 1242.6799177697037 2 622.3468627929688 MULTI HCD FTMS 0 0 0 21917 48039.9765625 0.9464399666189633 4 -0.09079742431640625 3 2 Oxidation (M) _M(Oxidation (M))LRIPQPLIM(Oxidation (M))_ NALCN|p.R146Q|1|0.06|ENSG00000102452|chr13:101376995-101376995|C/T|missense_variant 4.3292370932331545 0.45238836448149167 2 {I|L}G{[DS]|[MA]|[CV]|TT} 4 -1 16.198 0 0 1.3035 0 0 852.4268002943118 0 852.4268002943118 0 5.498037644757046 0 0 0 0 0 0 0 {I|L}G{[DS]|[MA]|[CV]|TT} 1.3035 - 41 NaN NaN 106957.5 NaN 17675 4243 21917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21922 88.614 NaN 436120 35 0 23061 0.327 -1 0 90 633.3692215381826 1264.7238901431651 2 633.3693237304688 MULTI HCD FTMS 0 0 0 21921 576802.1875 0.893210683799894 3 -0.07788848876953125 1 NaN NaN 2 {[HG]|PP}N 3 -1 11.483 0 0 0.90797 0 0 0 953.5169102496042 953.5169102496042 2.6317404843692334 0 0 0 0 0.7302046884880937 0 0 0 {[HG]|PP}N 0.90797 - 98 + NaN NaN 155167.4 NaN 17676 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21923 88.619 NaN 2599100 35 0 198400 0.235 + 35804 YYPELAFQF 9 112 589.2823775894361 1176.5502022456722 2 589.282958984375 MULTI HCD FTMS 0 0 0 21921 349423.40625 0.7831643961430784 3 -0.07788848876953125 2 Unmodified _YYPELAFQF_ ENSG00000102218|ENST00000218340|RP2 26.268140514670165 0.13340543277302316 2 {I|L}A{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 5 4 29.832 0 0 2.5355 0 0 552.22172743965 0 552.22172743965 0 20.688330747580686 0 0 0 1.5138793319624577 0 0 0 + {I|L}A{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.5355 + + 745 NaN NaN 417113.5 NaN 17677 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21924 88.622 NaN 436710 35 0 45206 0.261 -1 0 93 608.8472036135051 1215.6798542938102 2 608.8474731445312 MULTI HCD FTMS 0 0 0 21921 73044.1640625 0.3136905543564042 1 -0.0290679931640625 3 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 4.6927 0 0 0.38602 0 0 431.2724233808572 521.2576998346311 952.5301232154884 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.38602 - 212 + NaN NaN 167242.9 NaN 17678 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21925 88.625 NaN 237590 35 0 17030 0.261 -1 0 80 619.8694371811132 1237.7243214290263 2 619.8692016601562 MULTI HCD FTMS 0 0 0 21921 203979.171875 0.709689093341582 5 -0.11702728271484375 4 NaN NaN 2 D 1 -1 7.4743 0 0 0.60387 0 0 61.0534028546411 1058.5988253229127 1119.6522281775538 0 0 0 0 0 0.3494850021680094 0 0 0 D 0.60387 - 28 + NaN NaN 130476.3 NaN 17679 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21926 88.629 NaN 216410 35 0 22198 0.261 + 12794 KYDVLFALF 9 60 558.3103858889295 1114.606218844659 2 558.310791015625 MULTI HCD FTMS 0 0 0 21921 53927.421875 0.016387435944108665 34 -0.8475189208984375 5 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 2 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 62.954 0 0 5.6481 5.6481 92.879 0 0 0 9.232712163289278 37.00704680132773 9.232712163289278 62.95425621805954 0 2.1861818737241734 1.3010299956639813 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5.6481 - 249 NaN NaN 114282 NaN 17680 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21927 88.632 NaN 61611 35 0 13476 0.263 + 25208 SAPCAPFF 8 38 420.19138596634417 838.3682189994884 2 420.19110107421875 MULTI HCD FTMS 0 0 0 21921 53717.95703125 0.3613279291694317 20 -0.48691558837890625 6 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}[WY] 3 -1 10.458 0 0 1.2474 0 0 358.1358104074946 0 358.1358104074946 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}[WY] 1.2474 - 7 + NaN NaN 92627.9 NaN 17681 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21928 88.635 NaN 110390 35 0 70565 0.261 -1 0 33 485.10044731371516 484.0931708471152 1 485.1007385253906 MULTI HCD FTMS 0 0 0 21921 53684.55859375 0.3012386487917266 -8 0.16617584228515625 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 104997.9 NaN 17682 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21929 88.639 NaN 119150 35 0 7540.1 0.261 -1 0 56 422.58190287925765 1264.723879237973 3 422.5815734863281 MULTI HCD FTMS 0 0 0 21921 37235.03515625 0.1967377650969616 -41 1.075469970703125 8 NaN NaN 2 H 1 -1 0.3786 0 0 0.029936 0 0 870.5447543373856 254.0933016412719 1124.6380559786576 0 0 0 0 0 0 0 0 0 H 0.029936 - 5 + NaN NaN 105575.6 NaN 17683 4244 21921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21931 88.644 NaN 3136100 35 0 246360 0.327 -1 0 115 589.3431318065191 1176.671710679838 2 589.3434448242188 MULTI HCD FTMS 0 0 0 21930 3257795.25 0.6501440115588422 21 -0.5103225708007812 1 NaN NaN 2 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 5 -1 14.174 0 0 1.2046 0 0 546.3261569086771 0 546.3261569086771 0 0.5754914187774123 0 0 0 0.6989700043360187 0 0.5501648626366046 0 QKV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 1.2046 - 830 + NaN NaN 469002.8 NaN 17684 4245 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21932 88.648 NaN 149940 35 0 20884 0.261 + 36002 YYYVGFAYL 9 52 579.7789502664996 1157.543347599799 2 579.7785034179688 MULTI HCD FTMS 0 0 0 21930 30628.314453125 0.05354337158356506 21 -0.5103225708007812 2 Unmodified _YYYVGFAYL_ ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L 14.581692164780916 0.23437375358055648 2 M{I|L} 2 8 18.583 0 0 1.6054 0 0 0 910.3971041315061 910.3971041315061 16.989700043360187 0 0 0 0 0 0 0 0 M{I|L} 1.6054 - 23 + NaN NaN 119935.8 NaN 17685 4245 21930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21934 88.653 NaN 1192200 35 0 174810 0.327 -1 0 87 519.8182588754502 1037.6219648177002 2 519.8184204101562 MULTI HCD FTMS 0 0 0 21933 265657.40625 0.4288925398046971 -6 0.11350250244140625 1 NaN NaN 2 Q{I|L}{I|L}M[VS]A{M(Oxidation (M))|F} 8 -1 21.432 0 0 2.0655 0 0 130.13857966320649 0 130.13857966320649 0 8.00244822746525 0 0 0 0 0 0.3252574989159953 0 Q{I|L}{I|L}M[VS]A{M(Oxidation (M))|F} 2.0655 - 654 + NaN NaN 266605.6 NaN 17686 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21935 88.657 NaN 591080 35 0 67890 0.261 + 15715 LPESVSIFSL 10 53 546.3028408789656 1090.5911288247312 2 546.3029174804688 MULTI HCD FTMS 0 0 0 21933 280573.71875 0.7699611390132491 1 -0.03922271728515625 2 Unmodified _LPESVSIFSL_ ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17 114.6490535036381 4.5448240269034285E-05 2 {[TV]|[{I|L}S]}[EP]VS{I|L}{M(Oxidation (M))|F}S{I|L} 10 2 + 86.648 0 0 7.9451 7.9451 87.525 0 0 0 0.4524904595219681 16.53212513775344 0.4524904595219681 0.4524904595219681 0 1.8494850021680094 1.3979400086720375 1.6549471895720984 0 {[TV]|[{I|L}S]}[EP]VS{I|L}{M(Oxidation (M))|F}S{I|L};[EP]{I|L}SVS{I|L}{M(Oxidation (M))|F}S{I|L} 7.9451;7.9036 -;- 413 NaN NaN 178261.6 NaN 17687 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21936 88.661 NaN 166430 35 0 27856 0.261 + 3687 ELPFTLTL 8 37 467.26824822053845 932.5219435078769 2 467.2681884765625 MULTI HCD FTMS 0 0 0 21933 173505.796875 0.2163847808635569 7 -0.176544189453125 3 Unmodified _ELPFTLTL_ REV__ENST00000512466.1_1_5:311346-314627:+|nuORF 23.1484247019978 0.4234759064137959 2 {I|L}T{I|L} 3 -1 40.445 0 0 4.3372 0 0 587.2963690376141 0 587.2963690376141 0 37.346368802282015 0 0 0 1 0 0.4247425010840047 0 {I|L}T{I|L} 4.3372 + + 16 NaN NaN 118630 NaN 17688 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21937 88.664 NaN 390150 35 0 33576 0.261 + 28140 TIPDLDWEL 9 70 551.2769218690398 1100.5392908048796 2 551.277099609375 MULTI HCD FTMS 0 0 0 21933 224936.390625 0.3579248065789271 18 -0.44824981689453125 4 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 85.27202061508552 0.004649858145912257 2 [{I|L}T][DP]{I|L}DWE{I|L} 9 0 + 62.425 0 0 5.6723 5.6723 89.791 0 0 0 13.02378753635658 16.478174818886373 13.02378753635658 13.02378753635658 0 2.1435078169319297 2 1.086696871556164 0 + + [{I|L}T][DP]{I|L}DWE{I|L};{[QN]|[E{I|L}]|[KN]}[PS]{I|L}DWE{I|L};[VP]ET{I|L}DWE{I|L};[VP]ED[{I|L}T]WE{I|L};[{I|L}T][DN][YV]YT{I|L};{[QN]|[E{I|L}]|[KN]}[NS][YV]YT{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[WM]{I|L}[DP][VP];[VP]ED[WE]{I|L}T{I|L} 5.6723;4.4889;3.6267;2.9892;2.9323;1.7489;1.5832;1.4419 +;-;-;-;-;-;-;- + 372 NaN NaN 151450.3 NaN 17689 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21938 88.668 NaN 295520 35 0 44558 0.261 + 8307 GYADIVQLL 9 34 496.27647656720546 990.538400201211 2 496.2764587402344 MULTI HCD FTMS 0 0 0 21933 157056.765625 0.06286696459307352 13 -0.31072998046875 5 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 56.17704186161178 0.022929533404884107 2 {I|L}VQ{I|L}{I|L} 5 4 54.949 0 0 5.5473 0 0 406.14803276508826 0 406.14803276508826 0 40.25576261223691 0 0 0 1.8494850021680094 0 0 0 + {I|L}VQ{I|L}{I|L} 5.5473 + + 76 NaN NaN 131217 NaN 17690 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21939 88.671 NaN 568010 35 0 49813 0.261 + 6388 FPGFFSPML 9 66 529.7545857079988 1057.4946184827975 2 529.7548828125 MULTI HCD FTMS 0 0 0 21933 156795.671875 0.43990296371936577 11 -0.2849578857421875 6 Oxidation (M) _FPGFFSPM(Oxidation (M))L_ ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA 53.57557251787612 0.02656881086235134 2 {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 5 4 46.841 0 0 4.4294 0 0 448.21055800605626 0 448.21055800605626 0 12.851584312837048 0 0 0 0.8807196863200843 0 1.086696871556164 0 + {M(Oxidation (M))|F}SP{M(Oxidation (M))|F}{I|L} 4.4294 + + 180 NaN NaN 188272.6 NaN 17691 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21940 88.674 NaN 334110 35 0 32581 0.261 + 32182 VYSTMLVFF 9 64 561.7807336867787 1121.5469144403573 2 561.7808837890625 MULTI HCD FTMS 0 0 0 21933 54821.2734375 0.23333768055836726 18 -0.44824981689453125 7 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ ENSG00000104613|ENST00000397977|INTS10 53.57557251787612 0.02656881086235134 2 {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 45.477 0 0 4.0549 0 0 597.2460804669937 0 597.2460804669937 0 20.415703523873674 0 0 0 1.6549471895720984 0 0 0 + {I|L}V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.0549 + + 157 NaN NaN 138475.6 NaN 17692 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21941 88.677 NaN 208020 35 0 24087 0.261 + 17924 MILELDPTF 9 53 539.7781045038707 1077.5416560745414 2 539.7781982421875 MULTI HCD FTMS 0 0 0 21933 77216.2109375 0.04271467274955593 21 -0.526947021484375 8 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 61.357469665136826 0.01568246967499496 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F} 9 2 + 72.162 0 0 6.6969 6.6969 93.727 0 0 0 20.20689673945462 54.045905011532 20.20689673945462 35.28273777167043 0 2.10697580801237 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{I|L}DTP{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}ES{[QN]|[E{I|L}]|[KN]}P{M(Oxidation (M))|F} 6.6969;3.4226 -;- 66 NaN NaN 131716.2 NaN 17693 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21942 88.681 NaN 109200 35 0 19172 0.261 -1 MPDPSNWLSAL 11 39 623.7922854661188 1245.5700179990374 2 623.793212890625 MULTI HCD FTMS 0 0 0 21933 42128.0234375 0.711382718202505 -5 0.0972900390625 9 Oxidation (M) _M(Oxidation (M))PDPSNWLSAL_ ENSG00000108389|ENST00000682306|MTMR4;nc|ENSG00000108389|Q9NYA4|MTMR4 15.738622578938676 0.31995127722034494 2 {I|L}SA{I|L} 4 -1 43.928 0 0 3.5267 0 0 843.3204212873062 0 843.3204212873062 0 42.33410649039925 0 0 0 1 0 0.5 0 {I|L}SA{I|L} 3.5267 + + 13 NaN NaN 119305.6 NaN 17694 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21943 88.684 NaN 132480 35 0 17388 0.262 + 32235 VYTSAYLLV 9 51 514.7860798294571 NaN 0 514.7857666015625 PEAK HCD FTMS 0 0 0 21933 39257.42578125 0.7656159189344167 1 -0.03922271728515625 10 Unmodified _VYTSAYLLV_ REV__ENSG00000187258|ENST00000360581|NPSR1;REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1;REV__nc|ENSG00000187258|Q6W5P4-4|NPSR1;REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1 16.942295170755138 0.2079222001251384 2 P 1 -1 16.99 0 0 1.6534 0 0 765.4266080458298 162.05588709049064 927.4824951363204 0 0 0 0 0 1 0 0 0 P 1.6534 - 99 + NaN NaN 111255 NaN 17695 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21944 88.687 NaN 124230 35 0 6678.1 0.261 -1 0 72 567.3302378868722 1132.6459228405442 2 568.3336181640625 MULTI HCD FTMS 0 0 0 21933 47484.7890625 0.8683689578663284 -4 0.07445526123046875 11 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.2894 0 0 967.5675517241365 0 967.5675517241365 0 2.385606273598313 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2894 - 30 + NaN NaN 110729.5 NaN 17696 4246 21933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21946 88.692 NaN 1268000 35 0 51311 0.326 -1 0 126 597.8563626585645 1193.698172383929 2 597.8565063476562 MULTI HCD FTMS 0 0 0 21945 1041402.4375 0.3658168064397518 23 -0.5597305297851562 1 NaN NaN 2 D[RV]AMM 6 -1 12.028 0 0 1.0076 0 0 61.05380357699625 426.3009040716319 487.35470764862816 0 0 0 0 0 1.0138793319624577 0 0.3054621874040891 0.4247425010840047 D[RV]AMM 1.0076 - 480 + NaN NaN 284860 NaN 17697 4247 21945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21947 88.697 NaN 163180 35 0 35375 0.263 + 31011 VSLFSPSVL 9 34 474.77374910791224 947.5329452826245 2 474.7734680175781 MULTI HCD FTMS 0 0 0 21945 53818.8984375 0.02548091582023466 19 -0.4615020751953125 2 Unmodified _VSLFSPSVL_ REV__ENSG00000173083|ENST00000311412|HPSE;REV__HPSE|p.T60S|1|0.33|ENSG00000173083|chr4:83334605-83334605|T/A|missense_variant;REV__nc|ENSG00000173083|Q9Y251-2|HPSE;REV__nc|ENSG00000173083|Q9Y251-3|HPSE;REV__nc|ENSG00000173083|Q9Y251-4|HPSE 26.88365393820708 0.12808753336095696 2 {I|L}SV{I|L} 4 -1 50.433 0 0 5.3226 0 0 517.2532584831064 0 517.2532584831064 0 48.21456278567766 0 0 0 1.4247425010840047 0 0.4247425010840047 0 {I|L}SV{I|L} 5.3226 - 45 NaN NaN 110780.9 NaN 17698 4247 21945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21948 88.7 NaN 315590 35 0 30404 0.261 + 13668 KYPENFFLL 9 73 585.8136157652201 NaN 0 585.8140258789062 PEAK HCD FTMS 0 0 0 21945 69682.9453125 0.5313653538820742 41 -1.0351028442382812 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 31.26834338654808 0.11176268520441639 2 EV{I|L} 3 7 16.44 0 0 1.4056 0 0 130.1039638529026 695.2845553033811 825.3885191562838 0 0 0 0 0 0 0 0.3252574989159953 0 EV{I|L} 1.4056 - 474 + NaN NaN 139454.7 NaN 17699 4247 21945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21950 88.705 NaN 605170 35 0 56313 0.326 + 21293 PRVQDGKPVIL 11 86 611.3721927504437 NaN 0 611.3562622070312 PEAK HCD FTMS 0 0 0 21949 27765.095703125 0.5729019082639855 -1 0.01291656494140625 1 Unmodified _PRVQDGKPVIL_ ENSG00000094914|ENST00000209873|AAAS;ENST00000550033.5_1_12:53701834-53703447:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS 4.897010918128616 0.3282287337590871 2 M 1 11 4.6041 0 0 0.37716 0 0 646.3863399913186 440.28009973697505 1086.6664397282937 0 0 0 0 0 0 0 0 0 M 0.37716 - 36 + NaN NaN 181839.2 NaN 17700 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21951 88.71 NaN 715320 35 0 63241 0.261 + 5537 FLENEQFFL 9 74 593.7923103513964 NaN 0 593.8109130859375 PEAK HCD FTMS 0 0 0 21949 8782.1162109375 0.2797300858480118 -3 0.061737060546875 2 Unmodified _FLENEQFFL_ ENSG00000188878|ENST00000636174|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;nc|ENSG00000188878|Q8TES7|FBF1 16.942295170755138 0.2079222001251384 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QNE{I|L} 6 5 34.954 0 0 2.9483 0 0 131.05832541911906 273.12412439517817 404.18244981429723 0 0 0 0 0 0 0 0 1.2302046884880937 {M(Oxidation (M))|F}{M(Oxidation (M))|F}QNE{I|L} 2.9483 - 808 + NaN NaN 194591.2 NaN 17701 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21952 88.713 NaN 415620 35 0 185950 0.261 -1 0 75 606.3694151439407 1210.7242773546814 2 606.3694458007812 MULTI HCD FTMS 0 0 0 21949 171361.21875 0.3846367892169585 5 -0.1244049072265625 3 NaN NaN 2 [Y{I|L}]G 3 -1 17.28 0 0 1.4273 0 0 0 874.5328765580595 874.5328765580595 11.795606106491906 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]G 1.4273 - 32 NaN NaN 149580.8 NaN 17702 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21953 88.717 NaN 165940 35 0 7045.5 0.261 -1 0 77 641.8825471420536 1281.750541350907 2 641.8826293945312 MULTI HCD FTMS 0 0 0 21949 159720.640625 0.5089808513532595 3 -0.0786285400390625 4 NaN NaN 2 A 1 -1 7.4743 0 0 0.58313 0 0 237.15991580217593 970.5498140924436 1207.7097298946196 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.58313 - 36 + NaN NaN 115632.9 NaN 17703 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21954 88.72 NaN 596060 35 0 68932 0.262 + 15416 LPDIYPDLL 9 69 529.7919938717205 1057.5694348102409 2 529.7922973632812 MULTI HCD FTMS 0 0 0 21949 123185.6171875 0.5910301556680576 -4 0.0908050537109375 5 Unmodified _LPDIYPDLL_ ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39 41.8396318013385 0.056899836730939755 2 [EP]V{I|L}YPD{I|L}{I|L} 9 2 + 57.831 0 0 5.4683 5.4683 85.626 0 0 0 4.762036441594191 37.06846728005458 4.762036441594191 6.3682209758717505 0 1.6861818737241734 0 0.28872548999643577 0 [EP]V{I|L}YPD{I|L}{I|L};[VP]E{I|L}YPD{I|L}{I|L} 5.4683;4.8662 -;- 622 NaN NaN 176231.8 NaN 17704 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21955 88.723 NaN 745220 35 0 275270 0.263 -1 0 51 405.1187845815165 808.223016229833 2 405.1187438964844 MULTI HCD FTMS 0 0 0 21949 199050.46875 0.15136861659923503 -4 0.0908050537109375 6 NaN NaN 2 [C(Carbamidomethyl (C))M]{I|L} 3 -1 10.19 0 0 1.2607 0 0 0 401.05222498111567 401.05222498111567 7.09060619004511 0 0 0 0 0.4247425010840047 0 0 0 [C(Carbamidomethyl (C))M]{I|L} 1.2607 - 7 + NaN NaN 205217.4 NaN 17705 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21956 88.727 NaN 305580 35 0 28583 0.261 + 35270 YVTISSLVF 9 72 514.7860798294571 NaN 0 514.7779541015625 PEAK HCD FTMS 0 0 0 21949 20215.3203125 0.39424824041826045 2 -0.04573822021484375 7 Unmodified _YVTISSLVF_ ENSG00000070540|ENST00000262139|WIPI1;ENST00000589459.5_1_17:66423364-66453609:-|nuORF;nc|ENSG00000070540|Q5MNZ9-2|WIPI1 36.04419817259434 0.09096180745216527 2 {M(Oxidation (M))|F}A{I|L}TDTP 7 8 25.098 0 0 2.4425 0 0 117.08114418604107 162.05616174869377 279.13730593473485 0 0 0 0 0 1.6549471895720984 0 0 0 {M(Oxidation (M))|F}A{I|L}TDTP 2.4425 - 171 + NaN NaN 135857.4 NaN 17706 4248 21949 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21958 88.732 NaN 2412900 35 0 600100 0.327 + 30088 VFTYVGALF 9 77 508.77622196796574 1015.5378910027315 2 508.7763366699219 MULTI HCD FTMS 0 0 0 21957 978819.375 0.6032574982750986 -3 0.07836151123046875 1 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 144.65680182435614 1.4474712564967525E-05 2 T[YV]GA{I|L}{M(Oxidation (M))|F} 7 2 71.745 0 0 7.0647 0 0 246.13665969062657 0 246.13665969062657 0 32.870929310609036 0 0 0 2.6549471895720984 0 1.9489700043360187 0 + T[YV]GA{I|L}{M(Oxidation (M))|F} 7.0647 + + 1192 NaN NaN 454020.4 NaN 17707 4249 21957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21959 88.736 NaN 177360 35 0 17367 0.261 + 2842 DYLFKVVLI 9 57 555.3337960322299 1108.6530391312597 2 555.3338623046875 MULTI HCD FTMS 0 0 0 21957 71071.5078125 0.11051723724042432 10 -0.23236846923828125 2 Unmodified _DYLFKVVLI_ ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B 43.77239144664712 0.04802738721622131 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 9 0 + 55.753 0 0 5.0289 5.0289 91.724 0 0 0 25.09127774521893 10.20689673945462 10.20689673945462 55.753115479863524 0 2.517220322351953 1.5228787452803376 0 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}KVV{I|L}{I|L} 5.0289 + + 75 + NaN NaN 117175.4 NaN 17708 4249 21957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21960 88.739 NaN 477780 35 0 58844 0.261 + 7718 FYLMQIVEI 9 58 586.3064103521549 1170.5982677711097 2 586.8087768554688 MULTI HCD FTMS 0 0 0 21957 104482.0703125 0.5059301894756785 -3 0.07836151123046875 3 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 60.07390631473393 0.0174780869009295 2 {[QN]|[E{I|L}]|[KN]}VNDQ{I|L}VNK 10 7 + 82.375 0 0 7.037 7.037 88.852 0 0 0 7.658467447160987 9.960966627905478 7.658467447160987 7.658467447160987 0 1.7302046884880937 0 0.28872548999643577 0.7059771852360797 {[QN]|[E{I|L}]|[KN]}VNDQ{I|L}VNK;{NN|[MP]|[D{I|L}]|[EV]}{I|L}NDQ{I|L}VNK;{[QN]|[E{I|L}]|[KN]}VNDQ{I|L}VGGK;{[QN]|[E{I|L}]|[KN]}VND[AG]{I|L}VNK;{[QN]|[E{I|L}]|[KN]}VGGDQ{I|L}VNK;{NN|[MP]|[D{I|L}]|[EV]}{I|L}GGDQ{I|L}VNK;{NN|[MP]|[D{I|L}]|[EV]}{I|L}ND[AG]{I|L}VNK;{NN|[MP]|[D{I|L}]|[EV]}{I|L}NDQ{I|L}VGGK;{[QN]|[E{I|L}]|[KN]}VND[AG]{I|L}VGGK;{[QN]|[E{I|L}]|[KN]}VGGDQ{I|L}VGGK 7.037;6.3828;6.2541;6.2541;6.2541;5.5999;5.5999;5.5999;5.4743;5.4743 -;-;-;-;-;-;-;-;-;- 712 NaN NaN 162813.4 NaN 17709 4249 21957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21961 88.743 NaN 155490 35 0 20381 0.261 + 12051 KIPHIWLML 9 72 575.843149791243 1149.671746649286 2 575.843017578125 MULTI HCD FTMS 0 0 0 21957 93687 0.8620783704733994 4 -0.09818267822265625 4 Unmodified _KIPHIWLML_ ENSG00000125531|ENST00000370097|FNDC11 4.75600775471527 0.31496297302216103 2 WY 2 8 5.5732 0 0 0.48476 0 0 312.27301725651097 485.2424410455688 797.5154583020798 0 0 0 0 0 0 0 0 0 WY 0.48476 - 27 + NaN NaN 118480.3 NaN 17710 4249 21957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21962 88.746 NaN 241090 35 0 32408 0.261 + 31835 VYMGLLAVF 9 56 514.7777172750068 1027.5408816168135 2 514.7761840820312 MULTI HCD FTMS 0 0 0 21957 67838.03125 0.3868244435210086 -11 0.23423004150390625 5 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 67.41302359171755 0.009925318700911543 2 {I|L}AV{M(Oxidation (M))|F} 4 5 48.175 0 0 4.6884 0 0 579.2727070730865 0 579.2727070730865 0 34.987737688117235 0 0 0 1.9247425010840047 0 0 0 + {I|L}AV{M(Oxidation (M))|F} 4.6884 + + 141 + NaN NaN 128257.1 NaN 17711 4249 21957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21964 88.751 NaN 1588300 35 0 195970 0.327 + 32313 VYVDFEGINF 10 98 601.7899926114316 1201.565432289663 2 601.7901000976562 MULTI HCD FTMS 0 0 0 21963 932624.5625 0.9895924955402994 1 -0.03289031982421875 1 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 185.05004568166646 2.950885128264942E-16 2 [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 10 0 + 114.59 0 0 9.5366 9.5366 94.961 0 0 0 17.894680962404124 82.03041097915226 17.894680962404124 10.836134377877329 0 2.6549471895720984 1.3010299956639813 1.7416440611282624 0.4247425010840047 + + [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F};[YV]DV{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}{M(Oxidation (M))|F}N;[YV]D{M(Oxidation (M))|F}VEG{I|L}N{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}GG{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}TTPN{M(Oxidation (M))|F};[YV]DVE{M(Oxidation (M))|F}G{I|L}N{M(Oxidation (M))|F};[YV]VDE{M(Oxidation (M))|F}G{I|L}{M(Oxidation (M))|F}N 9.5366;8.6348;8.4204;8.3689;8.3652;7.8073;7.5186;7.4681;7.467;7.4634 +;-;-;-;-;-;-;-;-;- + 9479 NaN NaN 333229.7 NaN 17712 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21965 88.755 NaN 1234200 35 0 180770 0.261 + 17472 LYSQLQVFF 9 89 572.8053843550698 1143.5962157769395 2 572.8056640625 MULTI HCD FTMS 0 0 0 21963 486775.28125 0.6327896294188672 -2 0.04573822021484375 2 Unmodified _LYSQLQVFF_ ENSG00000068438|ENST00000348411|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;ENST00000492562.5_1_X:48334751-48340044:+|nuORF;nc|ENSG00000068438|Q9UET6-2|FTSJ1 139.13845188893973 5.0762478717762276E-05 2 [Y{I|L}]SQ{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 102.8 0 0 8.989 8.989 93.351 0 0 0 23.82363902944128 80.40259496446993 23.82363902944128 9.208187539523749 0 2.6549471895720984 0.8538719643217619 1.8169015600442577 1.5138793319624577 + + [Y{I|L}]SQ{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]SQ{I|L}[AG]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]S[AG]{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[TV]|[{I|L}S]}{[SA]|[TG]}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]S[AG]{I|L}[AG]V{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{[VA]|[{I|L}G]}{[SA]|[TG]}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][H{I|L}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[EP] 8.989;8.1838;7.9743;6.6595;6.0587;6.056;0.12771 +;-;-;-;-;-;- + 421 NaN NaN 293752.1 NaN 17713 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21966 88.759 NaN 318130 35 0 21315 0.261 -1 0 84 633.3692215381826 1264.7238901431651 2 633.369140625 MULTI HCD FTMS 0 0 0 21963 390487.21875 0.6046914578922368 9 -0.21285247802734375 3 NaN NaN 2 RK 2 -1 11.281 0 0 0.89201 0 0 650.3402974691402 327.14414392642817 977.4844413955684 0 0 0 0 0 0.3807196863200844 0 0 0 RK 0.89201 - 72 + NaN NaN 137051.3 NaN 17714 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21967 88.762 NaN 1100800 35 0 100950 0.262 + 29066 TYFSTPLLL 9 80 527.7947509494053 1053.5749489656105 2 527.7946166992188 MULTI HCD FTMS 0 0 0 21963 254196.65625 0.4164772089597845 -4 0.09787750244140625 4 Unmodified _TYFSTPLLL_ ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2 100.37149154755038 0.004254194004462789 2 [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 9 0 + 80.261 0 0 7.618 7.618 96.617 0 0 0 20.344158250397285 16.478174818886373 16.478174818886373 80.26113935238348 0 2.1549471895720984 1.5228787452803376 1.0629529932484498 0 + + [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 7.618 + + 469 NaN NaN 257927.3 NaN 17715 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21968 88.766 NaN 663370 35 0 75975 0.261 + 32192 VYTDILIGL 9 65 503.7948189652341 1005.5750849972682 2 503.7947998046875 MULTI HCD FTMS 0 0 0 21963 163499.296875 0.5620343216242346 5 -0.13793182373046875 5 Unmodified _VYTDILIGL_ DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37 60.38955033654506 0.017036522530421875 2 {I|L}{I|L}{I|L}G{I|L} 5 4 53.443 0 0 5.3147 0 0 478.2059498517594 0 478.2059498517594 0 38.83925646871916 0 0 0 1.8494850021680094 0 0 0 + {I|L}{I|L}{I|L}G{I|L} 5.3147 + + 61 NaN NaN 187005 NaN 17716 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21969 88.769 NaN 578840 35 0 70618 0.261 + 7719 FYLMQIVEI 9 77 586.3064103521549 1170.5982677711097 2 586.3062133789062 MULTI HCD FTMS 0 0 0 21963 215933.46875 0.6766310196559595 -2 0.04573822021484375 6 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 60.07390631473393 0.0174780869009295 2 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 5 73.704 0 0 6.2962 0 0 244.17866713691564 0 244.17866713691564 0 52.826607393207965 0 0 0 2.1989700043360187 0 0.4247425010840047 0.3494850021680094 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 6.2962 - 684 NaN NaN 173788.8 NaN 17717 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21970 88.772 NaN 317980 35 0 29865 0.261 -1 LMFIHASLRL 10 79 608.8472036135051 1215.6798542938102 2 608.8475952148438 MULTI HCD FTMS 0 0 0 21963 71735.265625 0.3080694471574186 7 -0.18708038330078125 7 Oxidation (M) _LM(Oxidation (M))FIHASLRL_ ENSG00000144746|ENST00000273258|ARL6IP5 1.844237919475145 0.46554186016084764 2 {I|L}N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 9 -1 10.479 0 0 0.86196 0 0 166.17449456597848 0 166.17449456597848 0 2.5198556378416868 0 0 0 0 0 0.23965182871044374 0 {I|L}N{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 0.86196 - 401 + NaN NaN 142841 NaN 17718 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21971 88.776 NaN 103480 35 0 11086 0.261 -1 WPSLLGDML 9 45 524.2625913095783 1046.5106296859565 2 524.2618408203125 MULTI HCD FTMS 0 0 0 21963 21415.4609375 0.10111879291596415 26 -0.661834716796875 8 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 13.90604991867851 0.24021115267848145 2 {I|L}[DG]{M(Oxidation (M))|F}{I|L} 5 -1 26.048 0 0 2.489 0 0 483.247850486525 0 483.247850486525 0 22.068219083412792 0 0 0 0.805462187404089 0 0 0 {I|L}[DG]{M(Oxidation (M))|F}{I|L} 2.489 + + 13 NaN NaN 123242.6 NaN 17719 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21972 88.779 NaN 153700 35 0 5551.6 0.261 + 12192 KKNQNIQK 8 65 500.79864148692786 999.5827300406557 2 500.7984619140625 MULTI HCD FTMS 0 0 0 21963 44012.05859375 0.1447792023062929 -6 0.13654327392578125 9 Unmodified _KKNQNIQK_ ENSG00000125871|ENST00000377710|MGME1 8.593279151180031 0.5292430274356741 2 A 1 8 10.485 0 0 1.0489 0 0 105.07922742468868 820.4547184874345 925.5339459121233 0 0 0 0 0 0.5 0 0 0 A 1.0489 - 40 + NaN NaN 122340.7 NaN 17720 4250 21963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21974 88.784 NaN 339380 35 0 49998 0.327 + 10886 IWDETPLYF 9 59 592.2868806334895 1182.559208333779 2 592.2870483398438 MULTI HCD FTMS 0 0 0 21973 167417.625 0.07159118169887574 21 -0.5273056030273438 1 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 57.47134341890925 0.0211188941628804 2 [YV]{I|L}YTA[SG]Y{M(Oxidation (M))|F} 10 7 + 61.688 0 0 5.2164 5.2164 85.342 0 0 0 1.9576404378418744 46.11432819416656 1.9576404378418744 6.5321251377534395 0 1.4247425010840047 0 0.805462187404089 0 [YV]{I|L}YTA[SG]Y{M(Oxidation (M))|F};[YV]{I|L}YT{[QS]|[NT]}Y{M(Oxidation (M))|F};{[HG]|PP}{[YD]|[{M(Oxidation (M))|F}M]}ATY{I|L}P{M(Oxidation (M))|F};{[HG]|PP}{[YD]|[{M(Oxidation (M))|F}M]}AT[{I|L}P]Y{M(Oxidation (M))|F} 5.2164;4.6641;2.5307;2.2324 -;-;-;- 203 NaN NaN 134713.9 NaN 17721 4251 21973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21975 88.788 NaN 132410 35 0 16794 0.261 -1 0 67 619.8694371811132 1237.7243214290263 2 619.8695068359375 MULTI HCD FTMS 0 0 0 21973 162501.484375 0.5653789553740681 12 -0.28794097900390625 2 NaN NaN 2 A 1 -1 5.9862 0 0 0.48365 0 0 149.1040344190638 1014.5658663385374 1163.6699007576012 0 0 0 0 0 0.28872548999643577 0 0 0 A 0.48365 - 18 + NaN NaN 109664.7 NaN 17722 4251 21973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21976 88.792 NaN 253510 35 0 27323 0.261 + 12795 KYDVLFALF 9 62 558.3103858889295 1114.606218844659 2 558.3104248046875 MULTI HCD FTMS 0 0 0 21973 53010.6484375 0.016108847325184604 41 -1.0482864379882812 3 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 2 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 64.186 0 0 5.7587 5.7587 89.006 0 0 0 6.935749724493121 49.08748409920328 6.935749724493121 9.488474775526186 0 2.2302046884880937 1.3010299956639813 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[{I|L}A][Y{I|L}]{[SA]|[TG]}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5.7587;4.9074;3.2886 -;-;- 285 NaN NaN 126018.5 NaN 17723 4251 21973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21977 88.795 NaN 99560 35 0 11895 0.261 + 17400 LYQQCRALY 9 44 579.2929859494415 NaN 0 579.2914428710938 PEAK HCD FTMS 0 0 0 21973 20028.103515625 0.4938813818405925 -9 0.20522308349609375 4 Unmodified _LYQQCRALY_ REV__ENSG00000072121|ENST00000347230|ZFYVE26;REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF;REV__ENST00000554557.5_1_14:68248216-68272009:-|nuORF;REV__ENST00000557407.1_1_14:68264347-68282710:-|nuORF;REV__nc|ENSG00000072121|Q68DK2-2|ZFYVE26;REV__nc|ENSG00000072121|Q68DK2-4|ZFYVE26;REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26;REV__ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103134.9 NaN 17724 4251 21973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21979 88.8 NaN 2255200 35 0 75208 0.327 -1 0 121 589.3431318065191 1176.671710679838 2 589.3433227539062 MULTI HCD FTMS 0 0 0 21978 2753313.75 0.5494668354326808 28 -0.7275543212890625 1 NaN NaN 2 Q 1 -1 10.599 0 0 0.90076 0 0 502.2997366180751 543.301325768919 1045.601062386994 0 0 0 0 0 0.75 0 0 0 Q 0.90076 - 337 + NaN NaN 384017.9 NaN 17725 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21980 88.805 NaN 2489200 35 0 412120 0.261 + 7479 FVWNGRLF 8 86 519.7787942771838 NaN 0 519.7673950195312 PEAK HCD FTMS 0 0 0 21978 27336.689453125 0.6237895913434862 2 -0.0559234619140625 2 Unmodified _FVWNGRLF_ REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|26|1|anti-sense 11.114462752807354 0.38822285293237185 2 {M(Oxidation (M))|F}TYV 4 -1 22.155 0 0 2.1353 0 0 99.09091418461169 425.18013695169054 524.2710511363023 0 0 0 0 0 0 0 0.9247425010840047 0 {M(Oxidation (M))|F}TYV 2.1353 - 229 + NaN NaN 478935.8 NaN 17726 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21981 88.808 NaN 364950 35 0 16585 0.261 + 3653 ELKPNRLN 8 81 492.28534673812175 982.5561405430435 2 492.28533935546875 MULTI HCD FTMS 0 0 0 21978 232947.03125 0.5128697237607073 -4 0.094879150390625 3 Unmodified _ELKPNRLN_ REV__ENSG00000179111|ENST00000541682|HES7;REV__nc|ENSG00000179111|Q9BYE0|HES7 10.073929032068715 0.5196730168178844 2 {I|L}N 2 -1 17.959 0 0 1.8278 0 0 737.4143207951395 0 737.4143207951395 0 6.505149978319906 0 0 0 0 0 0 0 {I|L}N 1.8278 + + 57 NaN NaN 148547 NaN 17727 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21982 88.812 NaN 317650 35 0 35817 0.261 + 10887 IWDETPLYF 9 67 592.2868806334895 1182.559208333779 2 592.28759765625 MULTI HCD FTMS 0 0 0 21978 155869.65625 0.06665303537745834 22 -0.5701828002929688 4 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 42.09456458481378 0.05572955244001856 2 MYTA[SG]Y{M(Oxidation (M))|F} 8 7 54.418 0 0 4.6017 0 0 244.1788807599625 0 244.1788807599625 0 41.22994718840225 0 0 0 1.4247425010840047 0 0.805462187404089 0 MYTA[SG]Y{M(Oxidation (M))|F} 4.6017 - 262 NaN NaN 137352.1 NaN 17728 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21983 88.815 NaN 231300 35 0 32844 0.261 + 29408 TYSFYLGLL 9 47 538.7854634323888 1075.5563739315776 2 538.7859497070312 MULTI HCD FTMS 0 0 0 21978 62235.26171875 0.7702008546149128 -1 0.0162506103515625 5 Unmodified _TYSFYLGLL_ tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1 15.847184025352803 0.2234401846867398 2 [YT]{M(Oxidation (M))|F}ST 5 6 41.682 0 0 3.8754 0 0 0 473.2745455377563 473.2745455377563 20.713337517843655 0 0 0 0 0.8494850021680094 2 0 0 [YT]{M(Oxidation (M))|F}ST 3.8754 - 29 + NaN NaN 119890.6 NaN 17729 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21984 88.818 NaN 174580 35 0 25580 0.261 + 3688 ELPFTLTL 8 47 467.26824822053845 932.5219435078769 2 467.2688903808594 MULTI HCD FTMS 0 0 0 21978 52668.5703125 0.06568470478065778 13 -0.32413482666015625 6 Unmodified _ELPFTLTL_ REV__ENST00000512466.1_1_5:311346-314627:+|nuORF 23.1484247019978 0.4234759064137959 2 {I|L}T{I|L} 3 -1 40.445 0 0 4.3372 0 0 587.29692275215 0 587.29692275215 0 36.46591250700361 0 0 0 1 0 0.4247425010840047 0 {I|L}T{I|L} 4.3372 + + 20 NaN NaN 113167.6 NaN 17730 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21985 88.821 NaN 120860 35 0 13983 0.261 + 8308 GYADIVQLL 9 41 496.27647656720546 990.538400201211 2 496.2764587402344 MULTI HCD FTMS 0 0 0 21978 49201.42578125 0.019694435194877194 19 -0.4881744384765625 7 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 32.78568957990786 0.09846250359632436 2 {I|L}VQ{I|L}{I|L} 5 4 53.443 0 0 5.3954 0 0 406.14830214668126 0 406.14830214668126 0 44.49092531119419 0 0 0 1.8494850021680094 0 0 0 + {I|L}VQ{I|L}{I|L} 5.3954 + + 82 NaN NaN 105767.9 NaN 17731 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21986 88.825 NaN 191960 35 0 16577 0.261 + 21458 PWTPLHRCI 9 57 561.7953358181107 NaN 0 561.78076171875 PEAK HCD FTMS 0 0 0 21978 5812.38818359375 0.27679738060558035 1 -0.0295257568359375 8 Unmodified _PWTPLHRCI_ ENST00000493940.2_1_1:22177888-22181121:-|nuORF 7.289230182591677 0.2599242500475609 2 {M(Oxidation (M))|F}V 2 9 7.0783 0 0 0.63111 0 0 165.1094807327899 707.3039034479124 872.4133841807022 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 0.63111 - 52 + NaN NaN 114164.5 NaN 17732 4252 21978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21988 88.83 NaN 1843100 35 0 243760 0.327 -1 0 89 519.8182588754502 1037.6219648177002 2 519.8182373046875 MULTI HCD FTMS 0 0 0 21987 411132.75 0.6637562710314596 1 -0.026397705078125 1 NaN NaN 2 {M(Oxidation (M))|F}TY[YK]A{M(Oxidation (M))|F} 7 -1 25.789 0 0 2.4854 0 0 99.17071045683174 0 99.17071045683174 0 18.798892838162725 0 0 0 0 0 0.9247425010840047 0 {M(Oxidation (M))|F}TY[YK]A{M(Oxidation (M))|F} 2.4854 - 560 + NaN NaN 371256.2 NaN 17733 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21989 88.834 NaN 344160 35 0 89391 0.261 + 30719 VPIFTEEFL 9 62 547.792262945847 NaN 0 547.7924194335938 PEAK HCD FTMS 0 0 0 21987 127873.25 0.683218695336643 1 -0.026397705078125 2 Unmodified _VPIFTEEFL_ ENSG00000064961|ENST00000333651|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-2|HMG20B;nc|ENSG00000064961|Q9P0W2-3|HMG20B 54.773552608820026 0.03521077087578403 2 {M(Oxidation (M))|F}EET{M(Oxidation (M))|F} 5 6 43.672 0 0 3.9935 0 0 131.0949694111294 306.1818941705688 437.2768635816982 0 0 0 0 0 1.774227503252014 0 0.4247425010840047 0 {M(Oxidation (M))|F}EET{M(Oxidation (M))|F} 3.9935 - 163 + NaN NaN 143012.1 NaN 17734 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21990 88.838 NaN 269480 35 0 11347 0.261 + 19542 NSKNRLRVF 9 89 567.3302378868722 1132.6459228405442 2 567.3306884765625 MULTI HCD FTMS 0 0 0 21987 108948.0703125 0.522786974480244 3 -0.08881378173828125 3 Unmodified _NSKNRLRVF_ REV__ENSG00000160789|ENST00000368300|LMNA;REV__ENST00000368298.2_1_1:156104977-156106341:+|nuORF;REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF;REV__nc|ENSG00000160789|P02545-2|LMNA;REV__nc|ENSG00000160789|P02545-3|LMNA;REV__nc|ENSG00000160789|P02545-4|LMNA;REV__nc|ENSG00000160789|P02545-5|LMNA;REV__nc|ENSG00000160789|P02545-6|LMNA 7.910154910731844 0.2910521888787154 2 V{M(Oxidation (M))|F} 2 -1 19.706 0 0 1.7398 0 0 868.4993601958162 0 868.4993601958162 0 3.904243831634986 0 0 0 0.3252574989159953 0 0 0 V{M(Oxidation (M))|F} 1.7398 + + 405 + NaN NaN 124012.1 NaN 17735 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21991 88.841 NaN 218020 35 0 18193 0.261 + 28141 TIPDLDWEL 9 53 551.2769218690398 1100.5392908048796 2 551.2769165039062 MULTI HCD FTMS 0 0 0 21987 88313.140625 0.14052623361098582 25 -0.6323089599609375 4 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 52.268347100219714 0.028397529699942435 2 [{I|L}T][MT][HA]WE 8 5 36.387 0 0 3.3063 0 0 0 128.0725739845449 128.0725739845449 19.397737521010825 0 0 0 0 0.9247425010840047 1.6989700043360187 0.3494850021680094 0 [{I|L}T][MT][HA]WE 3.3063 - 110 NaN NaN 139661 NaN 17736 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21992 88.845 NaN 195080 35 0 14057 0.261 + 33637 YIVYHELVM 9 56 583.7967631176069 1165.5789733020138 2 583.7966918945312 MULTI HCD FTMS 0 0 0 21987 70112.6953125 1 0 0 5 Unmodified _YIVYHELVM_ ENSG00000140829|ENST00000268482|DHX38;ENST00000569952.1_1_16:72142713-72143598:+|nuORF;nc|ENSG00000140829|Q92620-2|DHX38 18.13498045792455 0.20367413111508956 2 [Y{I|L}][YQ]A[KS]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 5 + 41.589 0 0 3.5681 3.5681 88.346 0 0 0 13.44212497064703 28.630449684300103 13.44212497064703 23.724862742317466 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}][YQ]A[KS]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{[QS]|[NT]}{I|L}{[HG]|PP}[WY];[Y{I|L}]V[HD]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[Y{I|L}] 3.5681;1.5327;1.1025 -;-;- 82 NaN NaN 133371.5 NaN 17737 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21993 88.848 NaN 164740 35 0 20915 0.261 + 5321 FFLDRDGFLF 10 56 638.8214315839834 1275.6283102347668 2 638.8218383789062 MULTI HCD FTMS 0 0 0 21987 46150.12109375 0.8402832933038608 -1 0.0295257568359375 6 Unmodified _FFLDRDGFLF_ ENSG00000178695|ENST00000377474|KCTD12 40.23920728925047 0.14333095755487663 2 SE{I|L}{M(Oxidation (M))|F} 4 8 42.339 0 0 3.3191 0 0 781.3865833966812 0 781.3865833966812 0 31.102065882283796 0 0 0 0.4247425010840047 0 1.1549471895720984 0 SE{I|L}{M(Oxidation (M))|F} 3.3191 - 181 NaN NaN 115741.9 NaN 17738 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21994 88.851 NaN 96524 35 0 7434.9 0.262 -1 WPSLLGDML 9 48 524.2625913095783 1046.5106296859565 2 524.26318359375 MULTI HCD FTMS 0 0 0 21987 25283.666015625 0.11938355169902047 29 -0.7570419311523438 7 Oxidation (M) _WPSLLGDM(Oxidation (M))L_ ENSG00000140287|ENST00000267845|HDC;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;ENST00000559190.5_1_15:50545740-50555509:-|nuORF;nc|ENSG00000140287|P19113-2|HDC 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F}{I|L} 2 -1 20.969 0 0 2.0037 0 0 768.3782826154312 0 768.3782826154312 0 15.379166649310656 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L} 2.0037 + + 10 NaN NaN 111093.3 NaN 17739 4253 21987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21996 88.856 NaN 1090300 35 0 38761 0.327 -1 0 123 597.8563626585645 1193.698172383929 2 597.8563842773438 MULTI HCD FTMS 0 0 0 21995 823433.8125 0.289250261720517 30 -0.7698974609375 1 NaN NaN 2 W 1 -1 11.42 0 0 0.95669 0 0 989.6084639872478 0 989.6084639872478 0 1.18635957957963 0 0 0 0 0 0 0 W 0.95669 - 431 + NaN NaN 259651.8 NaN 17740 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21997 88.861 NaN 493070 35 0 54556 0.261 + 28644 TRLYLKQKAT 10 91 611.3721927504437 NaN 0 611.3564453125 PEAK HCD FTMS 0 0 0 21995 16803.16015625 0.3467145448123743 5 -0.1077880859375 2 Unmodified _TRLYLKQKAT_ REV__ENSG00000244414|ENST00000320493|CFHR1 5.731851221503515 0.33527861879838866 2 M 1 -1 4.6041 0 0 0.37716 0 0 646.3859127452248 440.27988611392817 1086.665798859153 0 0 0 0 0 0 0 0 0 M 0.37716 - 52 + NaN NaN 178844.9 NaN 17741 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21998 88.864 NaN 533040 35 0 66736 0.261 -1 CMDGALLVNTM 11 70 620.7725116042701 1239.5304702753401 2 620.772705078125 MULTI HCD FTMS 0 0 0 21995 271239.59375 0.611000228148354 -5 0.12458038330078125 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))DGALLVNTM_ ENST00000419794.1_1_9:34318953-34319253:+|nuORF 34.93206674587334 0.1695891461859059 2 [YN]SV{I|L} 5 -1 71.471 0 0 5.766 0 0 0 660.2176468075583 660.2176468075583 41.73393743112328 0 0 0 0 2 1.6989700043360187 1.3807196863200843 0.6237125054200234 [YN]SV{I|L} 5.766 - 453 NaN NaN 178008.9 NaN 17742 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 21999 88.867 NaN 265330 35 0 108910 0.261 -1 0 53 606.3694151439407 1210.7242773546814 2 606.36962890625 MULTI HCD FTMS 0 0 0 21995 89709.375 0.20136134776795922 11 -0.26821136474609375 4 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.57732 0 0 764.4734707887362 330.14548669986567 1094.6189574886018 0 0 0 0 0 0 0 0 0 {I|L} 0.57732 - 6 + NaN NaN 131325.8 NaN 17743 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22000 88.871 NaN 260560 35 0 25060 0.261 + -1 MIWPLKRKE 9 78 608.8472036135051 1215.6798542938102 2 608.847412109375 MULTI HCD FTMS 0 0 0 21995 48088.984375 0.20651971804513675 11 -0.26821136474609375 5 Oxidation (M) _M(Oxidation (M))IWPLKRKE_ REV__ENST00000467807.5_1_19:56884531-56888546:+|nuORF;REV__ENST00000468396.5_1_19:56884531-56888546:+|nuORF;REV__ENST00000490123.5_1_19:56884531-56886128:+|nuORF;REV__ENST00000596094.5_1_19:56884582-56885033:+|nuORF;REV__nc|ENSG00000290720|Q5EBM4-2|ZNF542P;REV__nc|ENSG00000290720|Q5EBM4|ZNF542P 2.0597508629832335 0.3354026079994024 2 KG{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 5 -1 7.4473 0 0 0.6126 0 0 638.3680999986915 0 638.3680999986915 0 1.9627248839266533 0 0 0 0 0 0 0 KG{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 0.6126 - 82 + NaN NaN 134378.5 NaN 17744 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22001 88.874 NaN 109920 35 0 10198 0.261 + 25399 SELPLLSHHS 10 51 560.2925122447882 1118.5704715563763 2 560.2937622070312 MULTI HCD FTMS 0 0 0 21995 34435.203125 0.5532155634386222 -2 0.0559234619140625 6 Unmodified _SELPLLSHHS_ ENST00000331595.8_1_X:152773909-152774230:+|nuORF;ENST00000492658.1_1_X:152771329-152774230:+|nuORF 13.042465956692817 0.38911719078024076 2 {I|L}{I|L} 2 8 25.217 0 0 2.2544 0 0 874.3924784572988 0 874.3924784572988 0 10.127881306118454 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.2544 + + 28 NaN NaN 102964.8 NaN 17745 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22002 88.877 NaN 124360 35 0 6243.8 0.263 + 19071 NEKKKLMTQF 10 53 422.9014622595046 NaN 0 422.9162292480469 PEAK HCD FTMS 0 0 0 21995 17975.88671875 0.9001060823307248 -11 0.2545166015625 7 Unmodified _NEKKKLMTQF_ REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF 1.7422754331352037 0.33869314273211465 2 A 1 -1 1.5938 0 0 0.18889 0 0 605.6475615045578 164.08481775455314 769.7323792591109 0 0 0 0 0 0 0 0 0 A 0.18889 - 3 + NaN NaN 108905 NaN 17746 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22003 88.881 NaN 103630 35 0 17839 0.261 + 31041 VSSPFIVSL 9 45 474.77374910791224 947.5329452826245 2 474.77362060546875 MULTI HCD FTMS 0 0 0 21995 29032.232421875 0.013745503752262384 26 -0.671630859375 8 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 25.399314129420986 0.14091189997036632 2 VS{I|L} 3 6 26.44 0 0 2.7904 0 0 131.08798702672317 514.2315767877561 645.3195638144794 0 0 0 0 0 1 0 0.3252574989159953 0 + VS{I|L} 2.7904 + + 14 + NaN NaN 100150.5 NaN 17747 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22004 88.884 NaN 76350 35 0 14576 0.261 -1 MPDPSNWLSAL 11 44 623.7922854661188 1245.5700179990374 2 623.7918090820312 MULTI HCD FTMS 0 0 0 21995 56717.23046875 0.9577391552593492 3 -0.0820159912109375 9 Oxidation (M) _M(Oxidation (M))PDPSNWLSAL_ ENSG00000108389|ENST00000682306|MTMR4;nc|ENSG00000108389|Q9NYA4|MTMR4 6.1918466704503565 0.39176533041107 2 {I|L}S[PS] 4 -1 23.188 0 0 1.8616 0 0 843.3192005841812 0 843.3192005841812 0 21.197887582883936 0 0 0 1 0 0 0 {I|L}S[PS] 1.8616 - 8 NaN NaN 103791.5 NaN 17748 4254 21995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22006 88.889 NaN 1753400 35 0 240000 0.327 + 30089 VFTYVGALF 9 70 508.77622196796574 1015.5378910027315 2 508.77630615234375 MULTI HCD FTMS 0 0 0 22005 900523.0625 0.5550025915892606 3 -0.065338134765625 1 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 144.65680182435614 1.4474712564967525E-05 2 T[YV]GA{I|L}{M(Oxidation (M))|F} 7 2 72.497 0 0 7.1388 0 0 246.13655287910314 0 246.13655287910314 0 33.62350429976899 0 0 0 2.7302046884880937 0 1.9489700043360187 0 + T[YV]GA{I|L}{M(Oxidation (M))|F} 7.1388 + + 659 NaN NaN 360930.2 NaN 17749 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22007 88.893 NaN 1700900 35 0 664470 0.262 -1 0 51 405.1187845815165 808.223016229833 2 405.11895751953125 MULTI HCD FTMS 0 0 0 22005 507319.3125 0.38579272377222174 3 -0.065338134765625 2 NaN NaN 2 V 1 -1 7.4743 0 0 0.92478 0 0 506.11026706166734 200.01853357486564 706.128800636533 0 0 0 0 0 0.5 0 0 0 V 0.92478 - 5 + NaN NaN 341721.6 NaN 17750 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22008 88.897 NaN 836660 35 0 157760 0.261 + 29504 TYVSFPLEL 9 58 534.7842040094574 1067.5538550857148 2 534.7845458984375 MULTI HCD FTMS 0 0 0 22005 229023.21875 0.29906542551863086 -7 0.1836700439453125 3 Unmodified _TYVSFPLEL_ ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22 118.89474601620944 0.0014903111061077812 2 [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L} 9 0 + 95.997 0 0 8.9922 8.9922 96.848 0 0 0 19.621892823592972 80.80706579873059 19.621892823592972 27.047509540478032 0 2.4674165578762484 1.3979400086720375 1.4489700043360187 0 + + [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L};[YT][YG]{I|L}P{I|L}E{I|L};[YT][PA][YV]{I|L}E{I|L};[YT]{[ES]|[DT]|[{I|L}C]}V[{I|L}P]{M(Oxidation (M))|F}{I|L} 8.9922;6.4586;3.836;3.2547 +;-;-;- + 335 NaN NaN 219696.5 NaN 17751 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22009 88.9 NaN 692070 35 0 57089 0.261 + 16976 LYIENQFFI 9 81 593.8103703069048 1185.6061876806095 2 594.2905883789062 MULTI HCD FTMS 0 0 0 22005 42058.40625 0.08399403422047821 12 -0.2911376953125 4 Unmodified _LYIENQFFI_ ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-4|PLD2 32.78568957990786 0.09846250359632436 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}SQ{I|L}W 8 7 43.184 0 0 3.6424 0 0 131.13945476143186 0 131.13945476143186 0 12.081954859771344 0 0 0 0.7614393726401688 0 0.28872548999643577 0.6307196863200843 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}SQ{I|L}W 3.6424 - 957 + NaN NaN 205528.3 NaN 17752 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22010 88.904 NaN 286920 35 0 40355 0.261 + 31836 VYMGLLAVF 9 48 514.7777172750068 1027.5408816168135 2 514.7774047851562 MULTI HCD FTMS 0 0 0 22005 102632.171875 0.5852267826964596 -5 0.13793182373046875 5 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 67.41302359171755 0.009925318700911543 2 {I|L}AV{M(Oxidation (M))|F} 4 5 51.938 0 0 5.0546 0 0 579.2728889738838 0 579.2728889738838 0 32.47425010840047 0 0 0 2 0 0 0 + {I|L}AV{M(Oxidation (M))|F} 5.0546 + + 120 + NaN NaN 136867.9 NaN 17753 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22011 88.907 NaN 694000 35 0 101280 0.261 + 7557 FYAWNFLQ 8 70 544.7622122785403 1087.5098716238806 2 545.2850952148438 MULTI HCD FTMS 0 0 0 22005 12517.7861328125 0.19876487160790388 -4 0.10504150390625 6 Unmodified _FYAWNFLQ_ ENST00000557682.6_1_15:93441140-93441287:+|nuORF 28.173230860318316 0.38285857429842723 2 Q{M(Oxidation (M))|F}{I|L}S[PG]Y{M(Oxidation (M))|F} 8 8 49.756 0 0 4.5752 0 0 130.05276749741978 0 130.05276749741978 0 20.000452295863553 0 0 0 0.4247425010840047 0 1.4361818737241734 0 Q{M(Oxidation (M))|F}{I|L}S[PG]Y{M(Oxidation (M))|F} 4.5752 - 1474 + NaN NaN 205355.8 NaN 17754 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22012 88.91 NaN 148770 35 0 7749.5 0.261 -1 0 61 641.8826567312225 1281.7507605292449 2 642.384521484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 {I|L}E 2 -1 8.5835 0 0 0.66967 0 0 131.22563642340202 905.3764132135374 1036.6020496369395 0 0 0 0 0 0 0 0 0 {I|L}E 0.66967 - 33 + NaN NaN 130198.5 NaN 17755 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22013 88.914 NaN 472640 35 0 112640 0.262 + 20378 NYVEDIPFL 9 71 555.2795033667621 1108.5444538003242 2 555.2796020507812 MULTI HCD FTMS 0 0 0 22005 110959.328125 0.5689739147936085 -3 0.0887908935546875 8 Unmodified _NYVEDIPFL_ ENSG00000162836|ENST00000583509|ACP6;nc|ENSG00000162836|Q9NPH0-2|ACP6 61.60191391372663 0.015340508911304802 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}ND{I|L}P{M(Oxidation (M))|F}{I|L} 9 3 + 80.346 0 0 7.2479 7.2479 92.365 0 0 0 12.672655519383085 16.478174818886373 12.672655519383085 12.672655519383085 0 1.805462187404089 1.6989700043360187 0.3252574989159953 0.4247425010840047 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}ND{I|L}P{M(Oxidation (M))|F}{I|L};[YN]VED{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}GGD{I|L}P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}P[MN]P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MN]P{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}N{[QV]|[N{I|L}]|[RA]|[KV]}[MN]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[{I|L}V]EV{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}N{[QV]|[N{I|L}]|[RA]|[KV]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D{I|L}M{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[{I|L}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}D{I|L} 7.2479;6.1047;6.0341;4.3633;3.758;2.8294;2.4594;2.4594;2.4228;2.3271 -;+;-;-;-;-;-;-;-;- + 341 NaN NaN 180767 NaN 17756 4255 22005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22015 88.919 NaN 920490 35 0 108360 0.327 + 29067 TYFSTPLLL 9 78 527.7947509494053 1053.5749489656105 2 527.7947387695312 MULTI HCD FTMS 0 0 0 22014 482452.875 0.7904534615003371 2 -0.03578948974609375 1 Unmodified _TYFSTPLLL_ ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2 100.37149154755038 0.004254194004462789 2 [YT]{M(Oxidation (M))|F}ST{I|L}P{I|L}{I|L} 9 2 + 97.036 0 0 9.2101 9.2101 98.888 0 0 0 21.751736484954378 76.23737325084201 21.751736484954378 97.03578771929884 0 2.4916440611282624 1.6989700043360187 1.1307196863200843 0 [YT]{M(Oxidation (M))|F}ST{I|L}P{I|L}{I|L} 9.2101 - 290 NaN NaN 229141.3 NaN 17757 4256 22014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22016 88.923 NaN 820040 35 0 108410 0.261 + 25712 SKEFLQVFF 9 77 572.8053843550698 1143.5962157769395 2 572.8053588867188 MULTI HCD FTMS 0 0 0 22014 239876.765625 0.31183080873838065 4 -0.07460784912109375 2 Unmodified _SKEFLQVFF_ REV__ENSG00000138658|ENST00000505019|ZGRF1;REV__nc|ENSG00000138658|Q86YA3-7|ZGRF1;REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant 69.10491478415734 0.009377850133389008 2 E{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 -1 75.076 0 0 6.5649 0 0 362.19957167793126 0 362.19957167793126 0 54.10732549025883 0 0 0 2.2059771852360797 0 0.6307196863200843 1.1549471895720984 E{I|L}QV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.5649 - 203 NaN NaN 208556 NaN 17758 4256 22014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22017 88.927 NaN 235850 35 0 11079 0.261 -1 0 85 633.3694187770183 1264.7242846208364 2 633.3692626953125 MULTI HCD FTMS 0 0 0 22014 290117.78125 0.22499524260393347 -24 0.5749588012695312 3 NaN NaN 2 R 1 -1 7.7866 0 0 0.61568 0 0 650.3427061069677 455.24836145572505 1105.5910675626928 0 0 0 0 0 0.3807196863200844 0 0 0 R 0.61568 - 93 + NaN NaN 132584.9 NaN 17759 4256 22014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22018 88.93 NaN 387450 35 0 13936 0.263 + 12579 KTPKNREK 8 83 500.79864148692786 999.5827300406557 2 500.7986145019531 MULTI HCD FTMS 0 0 0 22014 303994.34375 1 0 0 4 Unmodified _KTPKNREK_ ENSG00000158553|ENST00000444565|POM121L2 10.823927491677226 0.514154816617796 2 Q 1 8 10.133 0 0 1.0137 0 0 475.29915053535314 393.2130150350495 868.5121655704027 0 0 0 0 0 0.6989700043360187 0 0 0.3054621874040891 Q 1.0137 - 48 NaN NaN 174567.2 NaN 17760 4256 22014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22019 88.933 NaN 279440 35 0 27104 0.261 + 32314 VYVDFEGINF 10 76 601.7899926114316 1201.565432289663 2 601.7904663085938 MULTI HCD FTMS 0 0 0 22014 151762.59375 0.16103277773013955 7 -0.153350830078125 5 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 87.25819977447905 0.0012128544035916314 2 [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F} 10 0 + 85.94 0 0 7.1523 7.1523 86.715 0 0 0 0.7219888481174195 0.7219888481174195 0.7219888481174195 1.7609125905568135 0 3.004432191740108 1.3979400086720375 0.3494850021680094 0.3807196863200844 + + [YV]VD{M(Oxidation (M))|F}EG{I|L}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EVAN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}EG{I|L}GG{M(Oxidation (M))|F};[YV]VD[VS]YPN{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}NP{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}PGG{M(Oxidation (M))|F};[YV]VD[VS]YNP{M(Oxidation (M))|F};[YV]VD[VS]YPGG{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}GGP{M(Oxidation (M))|F} 7.1523;7.0058;6.4314;6.0588;5.8688;5.4043;5.398;4.8417;4.8353;4.3709 +;-;-;-;-;-;-;-;-;- + 1914 + NaN NaN 136700.9 NaN 17761 4256 22014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22021 88.938 NaN 1338800 35 0 44947 0.327 -1 0 106 589.3431318065191 1176.671710679838 2 589.3433837890625 MULTI HCD FTMS 0 0 0 22020 1607190.375 0.3207399844239014 33 -0.8417282104492188 1 NaN NaN 2 {[HG]|PP}N 3 -1 10.603 0 0 0.90108 0 0 0 865.4651463843936 865.4651463843936 -0.8287083154375612 0 -0.8287083154375612 0 0 0.7302046884880937 0 0 0 {[HG]|PP}N 0.90108 - 129 + NaN NaN 289145.2 NaN 17762 4257 22020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22022 88.943 NaN 556910 35 0 27311 0.262 + 12238 KLESIRTH 8 86 492.28534673812175 982.5561405430435 2 492.285400390625 MULTI HCD FTMS 0 0 0 22020 433936.59375 0.9553800268327084 1 -0.0161895751953125 2 Unmodified _KLESIRTH_ REV__ENSG00000115461|ENST00000233813|IGFBP5 7.910154910731844 0.5302565402355366 2 Q[{M(Oxidation (M))|F}V] 3 -1 12.341 0 0 1.256 0 0 590.3513050763687 0 590.3513050763687 0 1.5444315470562149 0 0 0 0.6109243748081782 0 0 0 Q[{M(Oxidation (M))|F}V] 1.256 - 58 NaN NaN 195285.5 NaN 17763 4257 22020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22023 88.946 NaN 264310 35 0 25534 0.261 -1 FYLMQIVEI 9 55 586.3064103521549 1170.5982677711097 2 586.305908203125 MULTI HCD FTMS 0 0 0 22020 26343.806640625 0.08254874453715517 5 -0.1041107177734375 3 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 31.26834338654808 0.10542797264966089 2 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 -1 43.822 0 0 3.7436 0 0 244.17833144355626 0 244.17833144355626 0 16.44093558737453 0 0 0 0.9247425010840047 0 0.3807196863200844 0 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 3.7436 - 268 NaN NaN 136958.4 NaN 17764 4257 22020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22024 88.949 NaN 101740 35 0 5914.9 0.261 + 16296 LQRKAPRNPA 10 47 575.843149791243 1149.671746649286 2 575.8428955078125 MULTI HCD FTMS 0 0 0 22020 24972.1484375 0.22978587244996476 12 -0.29443359375 4 Unmodified _LQRKAPRNPA_ ENSG00000170011|ENST00000302541|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-4|MYRIP;nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-6|MYRIP 1.4819007175156935 0.4674597685733628 2 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 9 14.693 0 0 1.278 0 0 131.19647876084974 593.2578829400999 724.4543617009497 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.278 - 98 + NaN NaN 107818.5 NaN 17765 4257 22020 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22026 88.954 NaN 276470 35 0 10724 0.327 + 16017 LPRVCPPASLF 11 89 600.3341475384078 1198.6537421436155 2 600.3344116210938 MULTI HCD FTMS 0 0 0 22025 149002.4375 0.45151377269664744 13 -0.33404541015625 1 Unmodified _LPRVCPPASLF_ REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF 8.745405648335112 0.3805662881914433 2 E{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.71609 0 0 341.2820515124193 578.2243746393186 919.506426151738 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F} 0.71609 - 638 + NaN NaN 126433.2 NaN 17766 4258 22025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22027 88.959 NaN 69698 35 0 10241 0.261 + 21901 QDLELMGLPF 10 42 581.7930908203125 NaN 0 581.7930908203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QDLELMGLPF_ tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1 3.5964929083625545 0.337106189561315 2 C 1 10 2.7642 0 0 0.23797 0 0 603.3258107404312 452.21164880924067 1055.537459549672 0 0 0 0 0 0 0 0 0 C 0.23797 - 1 + NaN NaN 98899 NaN 17767 4258 22025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22029 88.964 NaN 179310 35 0 37407 0.327 -1 MILELDPTF 9 50 547.7770464633916 NaN 0 547.7919311523438 PEAK HCD FTMS 0 0 0 22028 6977.14404296875 0.4179166660329806 -2 0.0257720947265625 1 Oxidation (M) _M(Oxidation (M))ILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 10.073929032068715 0.24642998803896465 2 {M(Oxidation (M))|F}EA 3 -1 16.114 0 0 1.4736 0 0 131.06372583200283 612.3097628229124 743.3734886549153 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}EA 1.4736 - 39 + NaN NaN 135755.9 NaN 17768 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22030 88.968 NaN 233430 35 0 11962 0.261 + 30344 VLFALDRIW 9 77 566.8291239334526 1131.643694933705 2 567.3296508789062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VLFALDRIW_ REV__ENSG00000174428|ENST00000472837|GTF2IRD2B;REV__ENSG00000196275|ENST00000451013|GTF2IRD2;REV__nc|ENSG00000196275|Q86UP8-6|GTF2IRD2 5.230669730166228 0.3113646817964458 2 SW 2 -1 20.969 0 0 1.853 0 0 840.5227049178451 0 840.5227049178451 0 3.979400086720375 0 0 0 0 0 0 0 SW 1.853 - 402 + NaN NaN 129755.6 NaN 17769 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22031 88.972 NaN 380470 35 0 47966 0.261 + 11117 IYIGLLQQL 9 66 530.8240148442687 1059.6334767553374 2 530.8238525390625 MULTI HCD FTMS 0 0 0 22028 62861.69921875 0.25147103239574714 -3 0.04537200927734375 3 Unmodified _IYIGLLQQL_ ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS 81.61307344734483 0.005330412723537057 2 [Y{I|L}]{I|L}G{I|L}{I|L}QQ{I|L} 9 0 + 76.833 0 0 7.2509 7.2509 90.747 0 0 0 5.6424927368725974 64.86035277528234 5.6424927368725974 9.208187539523749 0 2.6989700043360187 0 0 0 + + [Y{I|L}]{I|L}G{I|L}{I|L}QQ{I|L};[Y{I|L}]{I|L}G{I|L}{I|L}[AG]Q{I|L};[Y{I|L}]{I|L}G{I|L}{I|L}Q[AG]{I|L};[Y{I|L}]{I|L}G{I|L}{I|L}[AG][AG]{I|L} 7.2509;6.3819;6.3819;5.517 +;-;-;- + 191 NaN NaN 142817.5 NaN 17770 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22032 88.975 NaN 183600 35 0 13115 0.261 + 28142 TIPDLDWEL 9 61 551.2769218690398 1100.5392908048796 2 551.27734375 MULTI HCD FTMS 0 0 0 22028 76981.1328125 0.12249443940832222 31 -0.8159561157226562 4 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 43.85829265575387 0.04763305254408404 2 [{I|L}T][MT][HA]WE 8 5 32.452 0 0 2.9488 0 0 0 128.06682964239067 128.06682964239067 15.54113429432412 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [{I|L}T][MT][HA]WE 2.9488 - 141 NaN NaN 115560.6 NaN 17771 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22033 88.978 NaN 238310 35 0 14948 0.261 + 17925 MILELDPTF 9 56 539.7781045038707 1077.5416560745414 2 539.77880859375 MULTI HCD FTMS 0 0 0 22028 38895.75 0.021516456355820394 34 -0.8912124633789062 5 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 25.399314129420986 0.14091189997036632 2 [YT]VD{I|L} 5 8 42.703 0 0 3.963 0 0 0 483.22516372518515 483.22516372518515 21.249387366083 0 0 0 0 1 2 0 0 [YT]VD{I|L} 3.963 - 52 NaN NaN 121390.1 NaN 17772 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22034 88.982 NaN 124060 35 0 6854.9 0.261 + 3679 ELPEQFFQL 9 48 575.7925666818774 1149.5705804305546 2 575.7925415039062 MULTI HCD FTMS 0 0 0 22028 29417.740234375 0.04211715859770729 -13 0.31072998046875 6 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 22.65808497894818 0.16459551161911185 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 4 5 41.542 0 0 3.6137 0 0 596.2809386932498 0 596.2809386932498 0 33.470325397914564 0 0 0 1.2614393726401687 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 3.6137 + + 153 NaN NaN 114243.2 NaN 17773 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22035 88.985 NaN 181640 35 0 21930 0.261 + 12796 KYDVLFALF 9 56 558.3103858889295 1114.606218844659 2 558.3093872070312 MULTI HCD FTMS 0 0 0 22028 43452.97265625 0.013204465951217926 49 -1.2566680908203125 7 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 2 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 9 4 + 64.364 0 0 5.7746 5.7746 85.896 0 0 0 5.686362358410122 11.316140487536401 5.686362358410122 5.686362358410122 0 2.2302046884880937 1.2218487496163564 0 0 [{I|L}T][YQ]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5.7746;5.2644 -;- 302 NaN NaN 123907.2 NaN 17774 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22036 88.988 NaN 85044 35 0 7786.2 0.261 + 8309 GYADIVQLL 9 39 496.27647656720546 990.538400201211 2 496.2762145996094 MULTI HCD FTMS 0 0 0 22028 30016.669921875 0.012015126617888994 26 -0.6915969848632812 8 Unmodified _GYADIVQLL_ ENSG00000134996|ENST00000346234|OSTF1 21.536976647645854 0.1742816388551942 2 {I|L}VQ{I|L}{I|L} 5 4 46.186 0 0 4.6627 0 0 406.14671523261876 0 406.14671523261876 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 + {I|L}VQ{I|L}{I|L} 4.6627 + + 49 NaN NaN 124315.4 NaN 17775 4259 22028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22038 88.993 NaN 355560 35 0 37597 0.327 + 29218 TYLEGECLELL 11 67 641.8154850926732 1281.6164172521462 2 641.8155517578125 MULTI HCD FTMS 0 0 0 22037 155831.09375 0.3472172562400607 -7 0.163421630859375 1 Unmodified _TYLEGECLELL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 74.19965305603844 0.011256494238720478 2 EWC{I|L}E{I|L}{I|L} 7 5 79.571 0 0 6.2086 0 0 377.19481093574376 0 377.19481093574376 0 74.48206988169865 0 0 0 2.8494850021680094 0 0.75 0 EWC{I|L}E{I|L}{I|L} 6.2086 - 247 NaN NaN 151179.9 NaN 17776 4260 22037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22039 88.998 NaN 220030 35 0 61993 0.261 -1 GMHMPTSPTF 10 50 561.2399414684959 1120.4653300037917 2 561.2404174804688 MULTI HCD FTMS 0 0 0 22037 69770.609375 0.8926087480602389 1 -0.01956939697265625 2 Oxidation (M) _GM(Oxidation (M))HMPTSPTF_ ENSG00000267534|ENST00000646641|S1PR2 3.5964929083625545 0.45626689593999237 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8715 0 0 808.3187673590636 0 808.3187673590636 0 10.511525224473813 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8715 - 37 + NaN NaN 120493.7 NaN 17777 4260 22037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22040 89.001 NaN 238790 35 0 13782 0.261 + 26743 SYEDFFSAL 9 55 539.7402487084651 1077.46594448373 2 539.7402954101562 MULTI HCD FTMS 0 0 0 22037 14476.3662109375 0.3395167025060447 1 -0.01956939697265625 3 Unmodified _SYEDFFSAL_ ENSG00000153989|ENST00000368494|NUS1 15.847184025352803 0.2234401846867398 2 [YT]VD 4 7 31.682 0 0 2.9405 0 0 0 596.2366164970143 596.2366164970143 11.989700043360187 0 0 0 0 0 2 0 0 [YT]VD 2.9405 - 65 NaN NaN 119661.5 NaN 17778 4260 22037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22041 89.004 NaN 108380 35 0 10058 0.261 + 5322 FFLDRDGFLF 10 43 638.8214315839834 1275.6283102347668 2 638.8214721679688 MULTI HCD FTMS 0 0 0 22037 21368.048828125 0.3890610471920562 6 -0.16075897216796875 4 Unmodified _FFLDRDGFLF_ ENSG00000178695|ENST00000377474|KCTD12 15.248480904072842 0.3684828712757339 2 E{I|L}{M(Oxidation (M))|F} 3 8 25.974 0 0 2.0362 0 0 868.4042225568375 0 868.4042225568375 0 9.242947741795344 0 0 0 0 0 0.8807196863200843 0 E{I|L}{M(Oxidation (M))|F} 2.0362 - 92 NaN NaN 102003.8 NaN 17779 4260 22037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22042 89.008 NaN 95700 35 0 12445 0.264 -1 CWCCCCSCSW 10 47 471.1307427662611 NaN 0 471.1309509277344 PEAK HCD FTMS 0 0 0 22037 27742.82421875 0.3310588437762552 -19 0.437255859375 5 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))WC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CSCSW_ ENSG00000171700|ENST00000395042|RGS19 0.15932191953741626 0.34004793154798674 2 {I|L}P 2 -1 9.464 0 0 1.0065 0 0 487.98312141943785 239.10357080631096 727.0866922257488 0 0 0 0 0 0 0 0 0 {I|L}P 1.0065 - 11 + NaN NaN 109178.2 NaN 17780 4260 22037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22044 89.013 NaN 597280 35 0 23274 0.327 -1 0 108 597.8563626585645 1193.698172383929 2 597.8564453125 MULTI HCD FTMS 0 0 0 22043 543318 0.1908530732061332 37 -0.9855728149414062 1 NaN NaN 2 D 1 -1 11.722 0 0 0.98196 0 0 105.0784378234351 970.5453164300376 1075.6237542534727 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 D 0.98196 - 278 + NaN NaN 183071 NaN 17781 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22045 89.017 NaN 459360 35 0 66618 0.261 -1 0 84 611.3717896405319 610.3645131739319 1 611.3562622070312 MULTI HCD FTMS 0 0 0 22043 29657.3046875 0.07458436999825059 -19 0.433990478515625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 164529.5 NaN 17782 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22046 89.021 NaN 486000 35 0 61589 0.261 -1 CMDGALLVNTM 11 84 620.7725116042701 1239.5304702753401 2 620.7726440429688 MULTI HCD FTMS 0 0 0 22043 198059.234375 0.4461525536037761 2 -0.059173583984375 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))DGALLVNTM_ ENST00000419794.1_1_9:34318953-34319253:+|nuORF 34.93206674587334 0.1695891461859059 2 [YN]SV{I|L} 5 -1 72.457 0 0 5.8455 0 0 0 660.2161642100191 660.2161642100191 40.09582170060015 0 0 0 0 2 1.6989700043360187 1.2887254899964358 0.6382104921644451 [YN]SV{I|L} 5.8455 - 362 NaN NaN 191575.8 NaN 17783 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22047 89.024 NaN 198580 35 0 71524 0.261 -1 0 41 606.3694151439407 1210.7242773546814 2 606.3699951171875 MULTI HCD FTMS 0 0 0 22043 63849.91796875 0.14331730141984755 18 -0.48218536376953125 4 NaN NaN 2 {I|L}S 2 -1 6.4537 0 0 0.53304 0 0 332.3065660283126 675.2732637994749 1007.5798298277875 0 0 0 0 0 0 0 0 0 {I|L}S 0.53304 - 5 + NaN NaN 126715.5 NaN 17784 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22048 89.027 NaN 251270 35 0 34462 0.261 + 17230 LYNVISLEF 9 59 549.298065050114 1096.581577167028 2 549.2978515625 MULTI HCD FTMS 0 0 0 22043 51665.6328125 0.44326848592251433 2 -0.059173583984375 5 Unmodified _LYNVISLEF_ ENSG00000089094|ENST00000377071|KDM2B;ENSG00000173120|ENST00000529006|KDM2A;ENST00000528380.1_1_11:66975039-66982918:+|nuORF;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-5|KDM2B;nc|ENSG00000173120|Q9Y2K7-3|KDM2A 39.94969957227396 0.06557568441294001 2 DNM{I|L}S{I|L}E{M(Oxidation (M))|F} 8 3 75.91 0 0 6.9225 0 0 129.14489853948004 0 129.14489853948004 0 63.44625307001259 0 0 0 2.274227503252014 0 0.3807196863200844 0 DNM{I|L}S{I|L}E{M(Oxidation (M))|F} 6.9225 - 286 + NaN NaN 131611.5 NaN 17785 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22049 89.031 NaN 83827 35 0 10886 0.261 -1 LYMFTTTQW 9 44 603.7782172716695 NaN 0 603.7785034179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _LYM(Oxidation (M))FTTTQW_ ENSG00000198886|ENST00000361381|MT-ND4 6.723162845929126 0.26266733336404485 2 {I|L}D 2 -1 12.959 0 0 1.0749 0 0 276.15090918641073 698.2613009088499 974.4122100952607 0 0 0 0 0 0.5 0 0 0 {I|L}D 1.0749 - 4 + NaN NaN 100114.6 NaN 17786 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22050 89.034 NaN 93738 35 0 9530.8 0.261 + 33146 YEILNPMHIF 10 50 638.8214315839834 1275.6283102347668 2 638.8009643554688 MULTI HCD FTMS 0 0 0 22043 14015.75390625 0.25519334665570703 7 -0.19361114501953125 7 Unmodified _YEILNPMHIF_ REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant;REV__ENSG00000176597|ENST00000326505|B3GNT5 3.5964929083625545 0.45626689593999237 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.54794 0 0 149.09262429989332 976.4433174341455 1125.5359417340387 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54794 + + 10 + NaN NaN 114234.5 NaN 17787 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22051 89.037 NaN 76385 35 0 16562 0.264 -1 FMVMLFYQDF 10 37 452.87040671557247 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 22043 6038.5341796875 0.23385476212537512 -8 0.18299102783203125 8 Oxidation (M) _FMVM(Oxidation (M))LFYQDF_ ENST00000396821.7_1_22:38880557-38880716:-|nuORF 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105442.9 NaN 17788 4261 22043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22053 89.042 NaN 1475100 35 0 332750 0.327 + 29505 TYVSFPLEL 9 65 534.7842040094574 1067.5538550857148 2 534.7843627929688 MULTI HCD FTMS 0 0 0 22052 765796.375 1 0 0 1 Unmodified _TYVSFPLEL_ ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22 131.26759243768294 0.0005280990274065272 2 [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L} 9 0 + 103.6 0 0 9.7043 9.7043 97.916 0 0 0 19.621892823592972 85.79689690656103 19.621892823592972 34.13425655227236 0 2.5669015600442577 1.3979400086720375 1.5356668758921828 0 + + [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L};[YT][YG]{I|L}P{I|L}E{I|L};[YT][PA][YV]{I|L}E{I|L};[YT]{[ES]|[DT]|[{I|L}C]}V[{I|L}P]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}P{I|L}[YG][YT]{I|L};{[QN]|[E{I|L}]|[KN]}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V[YT]{I|L};{[QN]|[E{I|L}]|[KN]}P{I|L}[YG]{I|L}[YT];{[QN]|[E{I|L}]|[KN]}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}V{I|L}[YT] 9.7043;6.5069;4.3312;3.5206;1.272;1.0642;0.21936;0.011553 +;-;-;-;-;-;-;- + 469 NaN NaN 323350.8 NaN 17789 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22054 89.047 NaN 857420 35 0 327730 0.263 -1 0 43 405.1187845815165 808.223016229833 2 405.1189880371094 MULTI HCD FTMS 0 0 0 22052 716279.1875 0.5446969825872319 10 -0.26900482177734375 2 NaN NaN 2 [C(Carbamidomethyl (C))M]G 3 -1 5.0617 0 0 0.62627 0 0 0 457.1059313913129 457.1059313913129 1.5051499783199063 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]G 0.62627 - 8 NaN NaN 214922.8 NaN 17790 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22055 89.05 NaN 573520 35 0 82091 0.261 + 30090 VFTYVGALF 9 60 508.77622196796574 1015.5378910027315 2 508.7762145996094 MULTI HCD FTMS 0 0 0 22052 301873.78125 0.1860482400766938 10 -0.26900482177734375 3 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 114.94377779790601 0.0021353177819039447 2 [{M(Oxidation (M))|F}V]T[YV]GA{I|L}{M(Oxidation (M))|F} 9 0 + 70.098 0 0 6.9025 6.9025 91.18 0 0 0 6.623855178835925 51.10129291031335 6.623855178835925 10.72559982972642 0 2.6989700043360187 0 1.5994850021680094 0 + + [{M(Oxidation (M))|F}V]T[YV]GA{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]T[YV]Q{I|L}{M(Oxidation (M))|F};[Q{I|L}]VYYA{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}YYA{I|L}{M(Oxidation (M))|F} 6.9025;5.8464;4.593;4.4196 +;-;-;- + 276 NaN NaN 174922.3 NaN 17791 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22056 89.054 NaN 527550 35 0 47890 0.261 + 15641 LPEEWSQWL 9 80 594.2901585713441 1186.5657642094882 2 594.2901611328125 MULTI HCD FTMS 0 0 0 22052 248028.1875 0.5947717590458955 3 -0.08208465576171875 4 Unmodified _LPEEWSQWL_ ENSG00000106211|ENST00000248553|HSPB1 60.07390631473393 0.0174780869009295 2 WSQW{I|L} 5 4 57.95 0 0 4.8839 0 0 468.2216053693375 0 468.2216053693375 0 40.17240732274131 0 0 0 1.7059771852360797 0 0.6549471895720985 0.28872548999643577 + WSQW{I|L} 4.8839 + + 505 NaN NaN 175603.8 NaN 17792 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22057 89.057 NaN 381980 35 0 64227 0.262 + 31837 VYMGLLAVF 9 46 514.7777172750068 1027.5408816168135 2 514.77783203125 MULTI HCD FTMS 0 0 0 22052 170656.578125 0.9731139694063963 2 -0.05918121337890625 5 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 67.41302359171755 0.009925318700911543 2 [YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L}AV{M(Oxidation (M))|F} 9 0 + 71.092 0 0 6.9187 6.9187 95.202 0 0 0 67.11303739409743 16.478174818886373 16.478174818886373 71.09243748081781 0 2 1.5228787452803376 0 0 + + [YV]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L}AV{M(Oxidation (M))|F} 6.9187 + + 84 + NaN NaN 170406.8 NaN 17793 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22058 89.06 NaN 74666 35 0 13565 0.261 + 31042 VSSPFIVSL 9 27 474.77374910791224 947.5329452826245 2 474.77337646484375 MULTI HCD FTMS 0 0 0 22052 39250.26171875 0.01858329775997002 34 -0.9040756225585938 6 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 25.399314129420986 0.14091189997036632 2 {I|L}[WE]A{I|L} 5 8 36.466 0 0 3.8485 0 0 317.1945057599625 0 317.1945057599625 0 14.503187623076954 0 0 0 1 0 0.4247425010840047 0 {I|L}[WE]A{I|L} 3.8485 - 26 NaN NaN 109231.4 NaN 17794 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22059 89.064 NaN 91181 35 0 21452 0.261 + -1 NQGNVMVQ 8 39 453.20970195601444 NaN 0 453.20953369140625 PEAK HCD FTMS 0 0 0 22052 26565.263671875 0.7298482234605695 3 -0.08208465576171875 7 Oxidation (M) _NQGNVM(Oxidation (M))VQ_ REV__ENST00000598164.2_1_19:40172096-40174784:+|nuORF 2.302733041254933 0.38822285293237185 2 R 1 -1 1.2591 0 0 0.13921 0 0 440.13850683996014 305.1365145318969 745.2750213718571 0 0 0 0 0 0 0 0 0 R 0.13921 - 1 + NaN NaN 98498 NaN 17795 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22060 89.067 NaN 153580 35 0 12675 0.261 + 32315 VYVDFEGINF 10 52 601.7899926114316 1201.565432289663 2 602.1264038085938 MULTI HCD FTMS 0 0 0 22052 54132.921875 0.08779183345265261 13 -0.3543853759765625 8 Unmodified _VYVDFEGINF_ ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant 51.41523569358685 0.07264263333115425 2 [YV]VD{M(Oxidation (M))|F}E{[VA]|[{I|L}G]}N{M(Oxidation (M))|F} 10 0 + 74.659 0 0 6.2134 6.2134 88.215 0 0 0 20.993624753846092 58.20493438421167 20.993624753846092 9.164539485499262 0 2.305462187404089 1.5228787452803376 0 0 + + [YV]VD{M(Oxidation (M))|F}E{[VA]|[{I|L}G]}N{M(Oxidation (M))|F};[YV]VD{M(Oxidation (M))|F}E{[VA]|[{I|L}G]}GG{M(Oxidation (M))|F};[YV]VD[VS]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}N{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{I|L}T{M(Oxidation (M))|F}E{[VA]|[{I|L}G]}N{M(Oxidation (M))|F};[YV][C(Carbamidomethyl (C))R]{M(Oxidation (M))|F}T{I|L}M{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}[{I|L}T]E{[VA]|[{I|L}G]}N{M(Oxidation (M))|F} 6.2134;5.4507;3.3823;3.0511;2.6235;2.506 +;-;-;-;-;- + 385 NaN NaN 111788.9 NaN 17796 4262 22052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22062 89.072 NaN 309090 35 0 14789 0.327 -1 0 85 633.3694187770183 1264.7242846208364 2 633.3693237304688 MULTI HCD FTMS 0 0 0 22061 305879.1875 0.23721869684282426 -17 0.41870880126953125 1 NaN NaN 2 N 1 -1 9.1182 0 0 0.72096 0 0 238.14342632181143 909.4933777567746 1147.636804078586 0 0 0 0 0 0.6643943297944485 0 0 0 N 0.72096 - 97 + NaN NaN 144248.4 NaN 17797 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22063 89.076 NaN 467360 35 0 52363 0.262 + 29068 TYFSTPLLL 9 64 527.7947509494053 1053.5749489656105 2 527.7947998046875 MULTI HCD FTMS 0 0 0 22061 195153.375 0.3197403700666585 9 -0.2393646240234375 2 Unmodified _TYFSTPLLL_ ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2 78.14939416004806 0.006451203201226903 2 [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 9 0 + 78.923 0 0 7.491 7.491 96.378 0 0 0 20.87128018967597 58.918271902055324 20.87128018967597 78.9233563481401 0 2.1989700043360187 1.5228787452803376 1.1861818737241734 0 + + [YT]{M(Oxidation (M))|F}ST[{I|L}P]{I|L}{I|L} 7.491 + + 106 NaN NaN 158797.8 NaN 17798 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22064 89.08 NaN 555640 35 0 63861 0.261 + 7554 FYATSIFQL 9 79 545.2846490947747 1088.5547452563494 2 545.2845458984375 MULTI HCD FTMS 0 0 0 22061 152691.578125 0.37528861158520177 4 -0.10823822021484375 3 Unmodified _FYATSIFQL_ ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 99.75527289724121 0.004270341300239591 2 Q{M(Oxidation (M))|F}{I|L}STC{I|L}{M(Oxidation (M))|F} 8 6 71.086 0 0 6.5304 0 0 131.1005612667331 0 131.1005612667331 0 29.789784572998173 0 0 0 2.0994850021680094 0 1.5044321917401078 0 Q{M(Oxidation (M))|F}{I|L}STC{I|L}{M(Oxidation (M))|F} 6.5304 - 1997 + NaN NaN 192148.9 NaN 17799 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22065 89.083 NaN 292500 35 0 65909 0.261 + 20379 NYVEDIPFL 9 61 555.2795033667621 1108.5444538003242 2 555.279541015625 MULTI HCD FTMS 0 0 0 22061 95139.46875 0.48785331437019885 5 -0.13443756103515625 4 Unmodified _NYVEDIPFL_ ENSG00000162836|ENST00000583509|ACP6;nc|ENSG00000162836|Q9NPH0-2|ACP6 61.60191391372663 0.015340508911304802 2 [YN]VED{I|L}P{M(Oxidation (M))|F}{I|L} 9 0 + 62.776 0 0 5.6629 5.6629 90.078 0 0 0 7.632192780232785 40.93957925507027 7.632192780232785 14.636926347250636 0 1.7856668758921828 0 0.7302046884880937 0.3494850021680094 + + [YN]VED{I|L}P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[MN]P{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[RP]A{M(Oxidation (M))|F}N 5.6629;4.3425;2.2783 +;-;- + 303 NaN NaN 135676.1 NaN 17800 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22066 89.087 NaN 129940 35 0 15401 0.261 + 22499 QRRLDILS 8 56 500.79864148692786 999.5827300406557 2 500.79864501953125 MULTI HCD FTMS 0 0 0 22061 86319.4375 0.2839508013049996 7 -0.18024444580078125 5 Unmodified _QRRLDILS_ REV__ENSG00000166323|ENST00000393084|C11orf65 4.75600775471527 0.5349361699807423 2 S{I|L} 2 -1 12.307 0 0 1.2312 0 0 781.4369984357437 0 781.4369984357437 0 6.822581265925438 0 0 0 0 0 0 0 S{I|L} 1.2312 - 28 NaN NaN 108457 NaN 17801 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22067 89.09 NaN 57382 35 0 19471 0.262 + 25209 SAPCAPFF 8 26 420.19141751490747 838.368282096615 2 420.1914978027344 MULTI HCD FTMS 0 0 0 22061 38899.26171875 0.4743038768828865 1 -0.029541015625 6 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}[WY] 3 -1 10.458 0 0 1.2474 0 0 358.1374909362618 0 358.1374909362618 0 7.3586311141647816 0 0 0 0 0 0 0 {I|L}[WY] 1.2474 - 6 + NaN NaN 103959.5 NaN 17802 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22068 89.093 NaN 106060 35 0 8689.7 0.261 -1 0 47 422.58190287925765 1264.723879237973 3 422.5816955566406 MULTI HCD FTMS 0 0 0 22061 53179.921875 0.28098533904465406 -22 0.5159988403320312 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 107391.4 NaN 17803 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22069 89.096 NaN 240910 35 0 12697 0.261 + 17926 MILELDPTF 9 90 539.7781045038707 1077.5416560745414 2 539.7785034179688 MULTI HCD FTMS 0 0 0 22061 26197.865234375 0.014492206061872933 38 -0.9902114868164062 8 Unmodified _MILELDPTF_ ENSG00000131746|ENST00000254051|TNS4 25.399314129420986 0.14091189997036632 2 DTP{M(Oxidation (M))|F} 4 7 38.443 0 0 3.5677 0 0 599.334406466208 0 599.334406466208 0 27.897131498072127 0 0 0 1.3494850021680094 0 0 0 DTP{M(Oxidation (M))|F} 3.5677 - 127 NaN NaN 138592.4 NaN 17804 4263 22061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22071 89.101 NaN 866830 35 0 28013 0.327 -1 0 110 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 22070 913352.5625 0.18227379358825516 40 -1.0217971801757812 1 NaN NaN 2 Q 1 -1 11.722 0 0 0.99617 0 0 546.3257912392047 499.27601965991545 1045.6018108991202 0 0 0 0 0 0.7742275032520141 0 0 0 Q 0.99617 - 274 + NaN NaN 242397.4 NaN 17805 4264 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22072 89.106 NaN 260790 35 0 14016 0.261 -1 0 90 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22070 167479.890625 0.08919797497616497 -36 0.862640380859375 2 NaN NaN 2 D 1 -1 8.3718 0 0 0.67639 0 0 105.08029052617856 1014.5740450494749 1119.6543355756535 0 0 0 0 0 0.28872548999643577 0 0.3494850021680094 0 D 0.67639 - 139 + NaN NaN 130175.8 NaN 17806 4264 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22073 89.109 NaN 141190 35 0 12321 0.263 + 22216 QLSQRPLAA 9 50 492.28534673812175 982.5561405430435 2 492.2854309082031 MULTI HCD FTMS 0 0 0 22070 113670.546875 0.2502636829612302 8 -0.2098236083984375 3 Unmodified _QLSQRPLAA_ REV__ENST00000372839.7_2_20:43514450-43530188:+|nuORF 4.3292370932331545 0.3181982124262546 2 {I|L}C 2 -1 7.9588 0 0 0.81001 0 0 396.235902361206 367.19623743228755 763.4321397934935 0 0 0 0 0 0 0 0 0 {I|L}C 0.81001 - 14 + NaN NaN 108956.7 NaN 17807 4264 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22074 89.113 NaN 149130 35 0 5666.4 0.261 + 14258 LCKKNGFKVY 10 62 600.3341475384078 1198.6537421436155 2 600.3345336914062 MULTI HCD FTMS 0 0 0 22070 52117.92578125 0.15793004255125728 19 -0.5081787109375 4 Unmodified _LCKKNGFKVY_ ENSG00000182197|ENST00000378204|EXT1 3.944395688203298 0.4544253912184634 2 C(Carbamidomethyl (C)) 1 9 5.4846 0 0 0.45756 0 0 166.17887307502548 869.4352273880943 1035.6141004631197 0 0 0 0 0 0 0 0 0 + C(Carbamidomethyl (C)) 0.45756 + + 76 + NaN NaN 120207 NaN 17808 4264 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22075 89.116 NaN 192180 35 0 32950 0.261 + 35263 YVSKYIDYI 9 54 582.3018127695963 1162.5890726059924 2 582.30224609375 MULTI HCD FTMS 0 0 0 22070 72244.5390625 0.420459301028148 -3 0.088714599609375 5 Unmodified _YVSKYIDYI_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 41.8396318013385 0.056899836730939755 2 [YV]SAA{I|L}{I|L}E 8 5 82.498 0 0 7.0961 0 0 0 313.11676965885005 313.11676965885005 47.492822134202015 0 0 0 0 1.9049471895720984 2 0.3807196863200844 0 [YV]SAA{I|L}{I|L}E 7.0961 - 285 + NaN NaN 112934.8 NaN 17809 4264 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22076 89.119 NaN 77669 35 0 6661.4 0.261 -1 STFKESCLQF 10 48 623.7922854661188 1245.5700179990374 2 623.7928466796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _STFKESC(Carbamidomethyl (C))LQF_ ENSG00000170542|ENST00000380698|SERPINB9 2.498486711656943 0.462078817294651 2 E{I|L}W 3 -1 14.693 0 0 1.1796 0 0 164.0910884109499 650.2501925104124 814.3412809213623 0 0 0 0 0 0 0 0 0 E{I|L}W 1.1796 - 17 + NaN NaN 106632.1 NaN 17810 4264 22070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22078 89.124 NaN 643680 35 0 60511 0.327 + 29219 TYLEGECLELL 11 84 641.8154850926732 1281.6164172521462 2 641.8155517578125 MULTI HCD FTMS 0 0 0 22077 345469.65625 0.7697631022840841 -2 0.0524444580078125 1 Unmodified _TYLEGECLELL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 103.41943736471063 0.021333731317400288 2 [YT]{I|L}E{[DA]|[EG]}C{I|L}E{I|L}{I|L} 11 0 + 96.006 0 0 7.491 7.491 95.017 0 0 0 8.105447793863362 85.54799541270032 8.105447793863362 32.41811817498017 0 2.8494850021680094 1.3010299956639813 1.1549471895720984 0 + + [YT]{I|L}E{[DA]|[EG]}C{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}[YT]{[DA]|[EG]}C{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}C{I|L}[W{M(Oxidation (M))|F}][{M(Oxidation (M))|F}V]{I|L} 7.491;4.9615;1.1312 +;-;- + 461 NaN NaN 185777.7 NaN 17811 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22079 89.129 NaN 754930 35 0 180840 0.261 -1 0 68 565.8268344702751 1129.6391160073501 2 565.8267211914062 MULTI HCD FTMS 0 0 0 22077 340567.65625 0.252156882797645 -7 0.17000579833984375 2 NaN NaN 2 Y{I|L}V{I|L} 4 -1 43.928 0 0 3.8887 0 0 623.3281117169937 0 623.3281117169937 0 4.798187706630159 0 0 0 1.3494850021680094 0 0 0 Y{I|L}V{I|L} 3.8887 - 322 NaN NaN 211692.8 NaN 17812 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22080 89.132 NaN 582710 35 0 49619 0.261 + 33807 YLIGRRGRA 9 93 531.3192155051822 1060.6238780771644 2 531.3181762695312 MULTI HCD FTMS 0 0 0 22077 163890.703125 0.5204390183102754 -3 0.08208465576171875 3 Unmodified _YLIGRRGRA_ ENST00000450917.1_1_2:3523256-3523661:+|nuORF 12.531546534597751 0.2520865569484384 2 G{I|L}G{I|L}{I|L}Q[Q{I|L}] 8 7 32.447 0 0 3.0592 0 0 220.13152942686776 0 220.13152942686776 0 8.112696475837076 0 0 0 0.3494850021680094 0 0 0.8597246540877359 G{I|L}G{I|L}{I|L}Q[Q{I|L}] 3.0592 - 408 + NaN NaN 179235.3 NaN 17813 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22081 89.136 NaN 591110 35 0 56917 0.261 + 3680 ELPEQFFQL 9 90 575.7925666818774 1149.5705804305546 2 575.7922973632812 MULTI HCD FTMS 0 0 0 22077 211017.546875 0.3021122430827776 -7 0.17000579833984375 4 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 76.82478488871298 0.006879825292024087 2 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 73.72 0 0 6.4129 6.4129 89.208 0 0 0 17.266668591815417 51.427127331550864 17.266668591815417 9.208187539523749 0 2.2302046884880937 0 1.555462187404089 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.4129;5.6118;5.6118;1.1419;0.51052 +;-;-;-;- + 709 NaN NaN 180582.5 NaN 17814 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22082 89.139 NaN 350910 35 0 80643 0.261 + 26761 SYFPTVPGVYI 11 69 621.8245186436953 1241.6344843541906 2 621.8235473632812 MULTI HCD FTMS 0 0 0 22077 75695.3984375 0.4649862711867498 -3 0.08208465576171875 5 Unmodified _SYFPTVPGVYI_ ENSG00000136068|ENST00000295956|FLNB;ENST00000477629.1_1_3:58135593-58136214:+|nuORF;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 34.40172386719151 0.17300472122796048 2 [YN]{I|L}KK[TP]C 8 9 26.603 0 0 2.1426 0 0 0 291.1346115411255 291.1346115411255 17.35502013255578 0 0 0 0 1.25 1.6989700043360187 0 0 [YN]{I|L}KK[TP]C 2.1426 - 126 NaN NaN 147473.3 NaN 17815 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22083 89.142 NaN 210140 35 0 10626 0.261 + 29404 TYRSLLLVN 9 84 539.8149564473173 NaN 0 539.8325805664062 PEAK HCD FTMS 0 0 0 22077 18053.685546875 1 0 0 6 Unmodified _TYRSLLLVN_ ENSG00000181378|ENST00000341552|CFAP65 7.289230182591677 0.2599242500475609 2 PTD{I|L} 4 8 11.692 0 0 1.085 0 0 165.15372029527697 483.22858606510005 648.382306360377 0 0 0 0 0 0 0 0 0 PTD{I|L} 1.085 - 36 + NaN NaN 123848.9 NaN 17816 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22084 89.146 NaN 116750 35 0 17781 0.261 + 12797 KYDVLFALF 9 49 558.3103858889295 1114.606218844659 2 558.3101806640625 MULTI HCD FTMS 0 0 0 22077 46976.55859375 0.014275211350065037 55 -1.383636474609375 7 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 32.78568957990786 0.09846250359632436 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 10 4 + 62.695 0 0 5.6248 5.6248 89.152 0 0 0 4.259687322722812 48.001896823007826 4.259687322722812 11.303337684950066 0 1.9049471895720984 0 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F};[YT][Q{I|L}]{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 5.6248;4.6107 -;- 181 NaN NaN 102298.5 NaN 17817 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22085 89.149 NaN 86954 35 0 6491.1 0.261 + 7990 GFDSIVGLAL 10 42 496.27647656720546 990.538400201211 2 496.2763977050781 MULTI HCD FTMS 0 0 0 22077 16273.115234375 0.006513831831359277 32 -0.8379974365234375 8 Unmodified _GFDSIVGLAL_ tr|U7T775|U7T775_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00141PE=4SV=1 13.90604991867851 0.3810395177745597 2 {I|L}V[Q{I|L}]{I|L} 5 6 27.24 0 0 2.7501 0 0 406.15159804511876 0 406.15159804511876 0 21.755872241892042 0 0 0 0.9247425010840047 0 0 0 {I|L}V[Q{I|L}]{I|L} 2.7501 - 22 NaN NaN 102039.3 NaN 17818 4265 22077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22087 89.154 NaN 575440 35 0 43462 0.327 + 371 AIAKNHRRAAS 11 104 597.8425796300336 1193.670606326867 2 597.8564453125 MULTI HCD FTMS 0 0 0 22086 14720.0498046875 0.4585723243913136 -2 0.0524749755859375 1 Unmodified _AIAKNHRRAAS_ REV__ENSG00000091262|ENST00000205557|ABCC6;REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF;REV__nc|ENSG00000091262|O95255-3|ABCC6 9.5439744041441 0.373925449867384 2 DS 2 -1 18.271 0 0 1.5307 0 0 973.5676943585007 0 973.5676943585007 0 6.677353201839438 0 0 0 0 0 0.3807196863200844 0 DS 1.5307 - 355 NaN NaN 173922.9 NaN 17819 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22088 89.158 NaN 448800 35 0 24572 0.261 + 22505 QRRRFLSV 8 82 531.3192155051822 1060.6238780771644 2 531.31982421875 MULTI HCD FTMS 0 0 0 22086 255831.6875 0.8123999089418218 -2 0.0524749755859375 2 Unmodified _QRRRFLSV_ REV__ENST00000370076.2_1_1:107685885-107690770:+|nuORF 8.593279151180031 0.5292430274356741 2 {I|L}{I|L}Q{[QN]|[E{I|L}]|[KN]} 5 -1 11.427 0 0 1.0774 0 0 446.2538319318375 0 446.2538319318375 0 -1.3759183738248115 -1.3759183738248115 0 0 0 0 0 0 {I|L}{I|L}Q{[QN]|[E{I|L}]|[KN]} 1.0774 - 64 NaN NaN 174587.7 NaN 17820 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22089 89.162 NaN 110160 35 0 10413 0.261 + 30972 VRTIHLYLVC 10 52 608.8472036135051 1215.6798542938102 2 608.8473510742188 MULTI HCD FTMS 0 0 0 22086 29922.958984375 0.1285051271688313 23 -0.593109130859375 3 Unmodified _VRTIHLYLVC_ REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant;REV__ENSG00000164742|ENST00000297323|ADCY1 0.776531954647913 0.4711933975711956 2 D 1 -1 5.4846 0 0 0.45115 0 0 166.18087407413537 931.4746187799436 1097.655492854079 0 0 0 0 0 0 0 0 0 D 0.45115 - 8 + NaN NaN 109844.8 NaN 17821 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22090 89.165 NaN 381040 35 0 41778 0.261 + 10888 IWDETPLYF 9 70 592.2868806334895 1182.559208333779 2 592.7860717773438 MULTI HCD FTMS 0 0 0 22086 89478.9375 0.061227807286472716 34 -0.8922195434570312 4 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 34.10243960390752 0.09241788333544565 2 T[{I|L}P]Y{M(Oxidation (M))|F} 5 4 33.258 0 0 2.8123 0 0 543.2332630841812 0 543.2332630841812 0 -3.561603143133503 -3.561603143133503 0 0 1.1237125054200234 0 0.6307196863200843 0 + T[{I|L}P]Y{M(Oxidation (M))|F} 2.8123 + + 458 NaN NaN 153451.2 NaN 17822 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22091 89.169 NaN 167070 35 0 33799 0.261 -1 TLLRQCPFLL 10 50 630.8607387549225 1259.706924576645 2 630.8602905273438 MULTI HCD FTMS 0 0 0 22086 27111.884765625 0.07462662936569452 -31 0.7383575439453125 5 Carbamidomethyl (C) _TLLRQC(Carbamidomethyl (C))PFLL_ ENST00000541763.6_1_12:109994935-109999613:-|nuORF 1.4819007175156935 0.4674597685733628 2 M 1 -1 3.4949 0 0 0.27743 0 0 701.3589153987137 424.27582727603755 1125.6347426747514 0 0 0 0 0 0 0 0 0 M 0.27743 - 11 + NaN NaN 117978.3 NaN 17823 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22092 89.172 NaN 126570 35 0 22388 0.261 -1 0 50 548.345899355648 1094.677245778096 2 548.345947265625 MULTI HCD FTMS 0 0 0 22086 43691.67578125 0.691365818281256 -6 0.16075897216796875 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3341 0 0 929.598340604071 0 929.598340604071 0 3.634993639681312 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3341 - 24 + NaN NaN 106698.4 NaN 17824 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22093 89.175 NaN 76106 35 0 27791 0.261 + 3 AACWNGSFL 9 34 484.7185596845198 967.4225664358396 2 484.7183532714844 MULTI HCD FTMS 0 0 0 22086 22662.275390625 0.5428452555681583 1 -0.02622222900390625 7 Unmodified _AACWNGSFL_ ENSG00000138641|ENST00000402738|HERC3 1.844237919475145 0.33703635659052655 2 G 1 8 1.5938 0 0 0.16475 0 0 545.2065152657209 362.1756685846313 907.3821838503522 0 0 0 0 0 0 0 0 0 + G 0.16475 + + 2 + NaN NaN 107172.6 NaN 17825 4266 22086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22095 89.18 NaN 1056900 35 0 80858 0.327 -1 0 90 611.3717896405319 610.3645131739319 1 611.3564453125 MULTI HCD FTMS 0 0 0 22094 85386.375 0.2147359327799459 -13 0.324005126953125 1 NaN NaN 2 V 1 -1 2.4743 0 0 0.40537 0 0 284.1709229413131 224.0981386774047 508.26906161871784 0 0 0 0 0 0 0 0 0 V 0.40537 - 26 + NaN NaN 251906.5 NaN 17826 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22096 89.185 NaN 697890 35 0 162650 0.261 + 29506 TYVSFPLEL 9 58 534.7842040094574 1067.5538550857148 2 534.784423828125 MULTI HCD FTMS 0 0 0 22094 401084.15625 0.5237477864138492 5 -0.13112640380859375 2 Unmodified _TYVSFPLEL_ ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22 111.28704002717404 0.0027322905094575235 2 [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L} 9 0 + 97.863 0 0 9.1671 9.1671 97.474 0 0 0 19.621892823592972 78.02575739411593 19.621892823592972 33.96688957819583 0 2.142159058960253 1.3979400086720375 1.5629529932484498 0 + + [YT]VS{M(Oxidation (M))|F}P{I|L}E{I|L};[YT][YG]{I|L}P{I|L}E{I|L};[YT]{[ES]|[DT]|[{I|L}C]}V[{I|L}P]{M(Oxidation (M))|F}{I|L};[YT][PA][YV]{I|L}E{I|L};{[QN]|[E{I|L}]|[KN]}P{I|L}[YG][YT]{I|L} 9.1671;5.9853;3.7952;3.7469;1.0443 +;-;-;-;- + 293 NaN NaN 190575.5 NaN 17827 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22097 89.188 NaN 235990 35 0 74225 0.261 -1 0 58 606.3694151439407 1210.7242773546814 2 606.369873046875 MULTI HCD FTMS 0 0 0 22094 89894.328125 0.20177649290216507 24 -0.6193008422851562 3 NaN NaN 2 Y 1 -1 6.9897 0 0 0.57732 0 0 623.4103868290939 421.22785364322505 1044.638240472319 0 0 0 0 0 0 0 0 0 Y 0.57732 - 19 + NaN NaN 132956 NaN 17828 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22098 89.191 NaN 163910 35 0 16858 0.261 + 13669 KYPENFFLL 9 47 585.8136157652201 NaN 0 585.8136596679688 PEAK HCD FTMS 0 0 0 22094 82693.8828125 0.6305798945135086 61 -1.5231246948242188 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.19168101101984525 2 {I|L}{M(Oxidation (M))|F} 2 8 15.969 0 0 1.3653 0 0 131.09596756324123 775.3426106707724 906.4385782340137 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.3653 - 10 + NaN NaN 115347.1 NaN 17829 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22099 89.195 NaN 119170 35 0 7316.5 0.261 + 28143 TIPDLDWEL 9 52 551.2769218690398 1100.5392908048796 2 551.2767333984375 MULTI HCD FTMS 0 0 0 22094 22890.40234375 0.03642382101284568 39 -0.9917755126953125 5 Unmodified _TIPDLDWEL_ ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 43.85829265575387 0.04763305254408404 2 WE{I|L} 3 6 36.242 0 0 3.2931 0 0 654.3218737261424 0 654.3218737261424 0 14.050697163554986 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + WE{I|L} 3.2931 + + 43 NaN NaN 113028 NaN 17830 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22100 89.198 NaN 358580 35 0 70188 0.261 + 10869 IVRERQSL 8 51 500.79864148692786 999.5827300406557 2 500.7901611328125 MULTI HCD FTMS 0 0 0 22094 18021.88671875 0.05928362513735093 11 -0.2819061279296875 6 Unmodified _IVRERQSL_ REV__ENST00000264956.10_2_4:5815433-5815706:+|nuORF 13.50788311687929 0.4944073034352369 2 KEVS{I|L} 5 -1 37.251 0 0 3.7266 0 0 425.23005873847814 0 425.23005873847814 0 17.557809497117844 0 0 0 0 0 0.3807196863200844 0 KEVS{I|L} 3.7266 - 80 NaN NaN 141389.7 NaN 17831 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22101 89.201 NaN 112070 35 0 23492 0.261 -1 QSPVNMMPW 9 41 561.2399414684959 1120.4653300037917 2 561.2399291992188 MULTI HCD FTMS 0 0 0 22094 27154.291015625 0.34739782159055316 8 -0.2165069580078125 7 2 Oxidation (M) _QSPVNM(Oxidation (M))M(Oxidation (M))PW_ CLASRP|p.E61Q|1|0.07|ENSG00000104859|chr19:45052152-45052152|G/C|missense_variant 1.4819007175156935 0.3397831423917744 2 V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 -1 7.4473 0 0 0.66466 0 0 709.2500722907042 0 709.2500722907042 0 0.45757490560674974 0 0 0 0 0 0 0 V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.66466 - 6 + NaN NaN 100292.2 NaN 17832 4267 22094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22103 89.206 NaN 587050 35 0 27339 0.327 -1 0 100 633.3694187770183 1264.7242846208364 2 633.3694458007812 MULTI HCD FTMS 0 0 0 22102 605591.6875 0.46965493828375254 -12 0.28778839111328125 1 NaN NaN 2 {[HG]|PP}N 3 -1 9.7936 0 0 0.77437 0 0 0 953.5180869057089 953.5180869057089 0.9421249706470309 0 0 0 0 0.6861818737241735 0 0 0 {[HG]|PP}N 0.77437 - 159 + NaN NaN 179792.8 NaN 17833 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22104 89.211 NaN 443790 35 0 153660 0.264 -1 0 46 405.1187845815165 808.223016229833 2 405.1189880371094 MULTI HCD FTMS 0 0 0 22102 111078.7890625 0.08447024887455265 16 -0.4196929931640625 2 NaN NaN 2 [C(Carbamidomethyl (C))M]G 3 -1 7.4473 0 0 0.92144 0 0 0 457.1056815953205 457.1056815953205 3.4678748622465623 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]G 0.92144 - 6 NaN NaN 158909.3 NaN 17834 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22105 89.214 NaN 295830 35 0 49411 0.261 + 30091 VFTYVGALF 9 55 508.77622196796574 1015.5378910027315 2 508.7762145996094 MULTI HCD FTMS 0 0 0 22102 92418.21875 0.056958397904787905 16 -0.4196929931640625 3 Unmodified _VFTYVGALF_ ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4 60.38955033654506 0.017036522530421875 2 {I|L}AG[PS]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 7 51.121 0 0 5.0338 0 0 165.07981230554395 0 165.07981230554395 0 31.656687756324686 0 0 0 0.75 0 0.8494850021680094 0 {I|L}AG[PS]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.0338 - 211 + NaN NaN 134151.1 NaN 17835 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22106 89.218 NaN 102440 35 0 15070 0.261 + 31838 VYMGLLAVF 9 30 514.7777172750068 1027.5408816168135 2 514.7782592773438 MULTI HCD FTMS 0 0 0 22102 42701.7578125 0.24349296992885822 8 -0.20656585693359375 4 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 45.7499826716795 0.03894913563566938 2 {I|L}AV{M(Oxidation (M))|F} 4 5 51.938 0 0 5.0546 0 0 579.2729839158058 0 579.2729839158058 0 51.938200260161125 0 0 0 2 0 0 0 + {I|L}AV{M(Oxidation (M))|F} 5.0546 + + 32 + NaN NaN 121256.1 NaN 17836 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22107 89.221 NaN 417280 35 0 85317 0.261 + 30448 VLPSWPTVT 9 51 500.27916214125617 998.5437713493124 2 500.7903137207031 MULTI HCD FTMS 0 0 0 22102 20085.904296875 1 0 0 5 Unmodified _VLPSWPTVT_ ENST00000321265.9_1_1:27272697-27272868:+|nuORF 11.640296217721598 0.25978676193971967 2 {[TV]|[{I|L}S]}[QP]KEVS 8 6 35.155 0 0 3.5207 0 0 0 127.0464488810634 127.0464488810634 11.510234424404686 0 0 0 0 0 1.6989700043360187 0.3807196863200844 0 {[TV]|[{I|L}S]}[QP]KEVS 3.5207 - 136 NaN NaN 165504.4 NaN 17837 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22108 89.224 NaN 67415 35 0 10785 0.261 + 23858 RSFQLVSL 8 28 475.2759405516505 NaN 0 475.2753601074219 PEAK HCD FTMS 0 0 0 22102 15109.2099609375 0.6123118531366326 1 -0.0262451171875 6 Unmodified _RSFQLVSL_ REV__ENST00000470379.1_1_1:167400920-167408655:-|nuORF;REV__ENST00000476733.5_1_1:167400920-167408655:-|nuORF 2.302733041254933 0.38822285293237185 2 W{I|L} 2 -1 8.5835 0 0 0.90492 0 0 132.10657170804058 514.2302950494749 646.3368667575155 0 0 0 0 0 0 0 0 0 W{I|L} 0.90492 - 8 + NaN NaN 120535 NaN 17838 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22109 89.228 NaN 55226 35 0 12419 0.261 + 30550 VNEWAPVF 8 33 481.24135397905303 NaN 0 481.2784423828125 PEAK HCD FTMS 0 0 0 22102 20390.966796875 1 0 0 7 Unmodified _VNEWAPVF_ REV__ENST00000297875.6_1_X:37985921-37986104:+|nuORF 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96048 NaN 17839 4268 22102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22111 89.233 NaN 1382400 35 0 343330 0.327 + 32102 VYSAAILEYL 10 77 571.3107143553958 1140.6068757775915 2 571.310546875 MULTI HCD FTMS 0 0 0 22110 400825.6875 0.45388633313453014 2 -0.0558013916015625 1 Unmodified _VYSAAILEYL_ ENSG00000105968|ENST00000308153|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-2|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-5|H2AZ2 39.94969957227396 0.1458432724694501 2 {I|L}{I|L}EY{I|L} 5 5 55.701 0 0 4.8835 0 0 491.23713881660314 0 491.23713881660314 0 44.281091924134884 0 0 0 1.9247425010840047 0 0 0 + {I|L}{I|L}EY{I|L} 4.8835 + + 140 NaN NaN 300423.4 NaN 17840 4269 22110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22112 89.237 NaN 247350 35 0 51155 0.261 + 786 ASTWWALNLF 10 51 604.8089873269447 1207.6034217206893 2 604.8087768554688 MULTI HCD FTMS 0 0 0 22110 103841.6328125 0.8064958460855151 -3 0.07866668701171875 2 Unmodified _ASTWWALNLF_ REV__ENSG00000007402|ENST00000424201|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47-3|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47-5|CACNA2D2;REV__nc|ENSG00000007402|Q9NY47|CACNA2D2 27.628801355627647 0.2527626205058048 2 {[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T]{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F} 10 -1 + 62.625 0 0 5.1859 5.1859 90.084 0 0 0 10.993624753846092 50.63486257521106 10.993624753846092 20 0 1.3494850021680094 1.6989700043360187 0.4247425010840047 0.4247425010840047 {[QV]|[N{I|L}]|[RA]|[KV]}[{I|L}T]{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F};[KA]{[QN]|[E{I|L}]|[KN]}{[MG]|[TS]}WN{I|L}{M(Oxidation (M))|F} 5.1859;3.5297 -;- 137 NaN NaN 126723.2 NaN 17841 4269 22110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22113 89.241 NaN 191180 35 0 28346 0.261 + 28663 TSAHERQLF 9 48 544.7779570118291 NaN 0 544.7614135742188 PEAK HCD FTMS 0 0 0 22110 19665.818359375 1 0 0 3 Unmodified _TSAHERQLF_ REV__ENSG00000119242|ENST00000238156|CCDC92;REV__ENST00000542348.5_1_12:124403402-124428035:-|nuORF;REV__ENST00000544798.2_1_12:124408671-124428876:-|nuORF;REV__nc|ENSG00000119242|Q53HC0-2|CCDC92 8.593279151180031 0.2536050107310812 2 Q{I|L} 2 -1 14.222 0 0 1.3077 0 0 681.3202134847926 162.05596338443596 843.3761768692285 0 0 0 0 0 0 0 0 0.3252574989159953 Q{I|L} 1.3077 + + 57 + NaN NaN 122627.6 NaN 17842 4269 22110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22114 89.244 NaN 226090 35 0 38298 0.261 -1 FPSWAMELL 9 61 555.2702112393592 1108.5258695455184 2 555.2684936523438 MULTI HCD FTMS 0 0 0 22110 64189.71875 0.3274515252193523 -3 0.07866668701171875 4 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 25.399314129420986 0.14091189997036632 2 E{I|L}{I|L} 3 -1 33.94 0 0 3.0617 0 0 735.3067494123062 0 735.3067494123062 0 27.609309280316907 0 0 0 0.9247425010840047 0 0 0 E{I|L}{I|L} 3.0617 + + 147 NaN NaN 126304.2 NaN 17843 4269 22110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22115 89.247 NaN 104000 35 0 15303 0.261 + 29785 VEFSFSLFF 9 44 561.7807025284197 NaN 0 561.7813720703125 PEAK HCD FTMS 0 0 0 22110 7045.2841796875 0.28473528715738605 -4 0.10823822021484375 5 Unmodified _VEFSFSLFF_ REV__ENST00000216297.6_1_14:21820582-21820828:-|nuORF 11.640296217721598 0.23883959125015683 2 {M(Oxidation (M))|F} 1 -1 14.292 0 0 1.2743 0 0 809.3995875746144 162.0552919977172 971.4548795723316 0 0 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F} 1.2743 + + 6 + NaN NaN 117839 NaN 17844 4269 22110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22117 89.252 NaN 628840 35 0 20955 0.327 -1 0 94 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 22116 693206.4375 0.13834019007629894 46 -1.1442642211914062 1 NaN NaN 2 Q 1 -1 11.479 0 0 0.97558 0 0 546.3261429081568 499.27524744205317 1045.60139035021 0 0 0 0 0 0.75 0 0 0 Q 0.97558 - 221 + NaN NaN 182336.1 NaN 17845 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22118 89.257 NaN 886450 35 0 47887 0.261 -1 0 116 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22116 595526.3125 0.3171708610615341 -30 0.7124557495117188 2 NaN NaN 2 D 1 -1 9.0714 0 0 0.73291 0 0 61.05414512176828 1058.5973629073044 1119.6515080290726 0 0 0 0 0 0.3252574989159953 0 0.3054621874040891 0 D 0.73291 - 306 + NaN NaN 223609.7 NaN 17846 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22119 89.26 NaN 664060 35 0 51499 0.261 -1 0 112 641.8826567312225 1281.7507605292449 2 641.8827514648438 MULTI HCD FTMS 0 0 0 22116 309054.9375 0.544310429870462 -2 0.045806884765625 3 NaN NaN 2 [YT]{I|L}EWC{I|L}E{I|L} 9 -1 48.406 0 0 3.7765 0 0 0 128.2073123100371 128.2073123100371 19.054556341805768 0 0 0 0 0 1.0969100130080565 0.9634679910804405 0 [YT]{I|L}EWC{I|L}E{I|L} 3.7765 - 660 NaN NaN 198189.9 NaN 17847 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22120 89.263 NaN 139380 35 0 17824 0.261 + 35264 YVSKYIDYI 9 54 582.3018127695963 1162.5890726059924 2 582.3021850585938 MULTI HCD FTMS 0 0 0 22116 88204.4609375 0.5133451811667281 3 -0.08539581298828125 4 Unmodified _YVSKYIDYI_ ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6 29.081581746732265 0.1154664336125038 2 [YV]SAA{I|L}{I|L}E 8 5 64.563 0 0 5.5533 0 0 0 313.1164644830688 313.1164644830688 41.603714508649844 0 0 0 0 0.7134679910804405 2 0.3807196863200844 0 [YV]SAA{I|L}{I|L}E 5.5533 - 175 + NaN NaN 110518.4 NaN 17848 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22121 89.267 NaN 198280 35 0 21066 0.261 -1 YPFVLGLVM 9 42 527.7855343975087 1053.5565158618174 2 527.7949829101562 MULTI HCD FTMS 0 0 0 22116 25969.720703125 0.7721641623760582 3 -0.08539581298828125 5 Oxidation (M) _YPFVLGLVM(Oxidation (M))_ ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2 36.466142684027034 0.08156716203802528 2 {I|L}[{I|L}P]{[MG]|[TS]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 8 -1 30.667 0 0 2.9108 0 0 131.0786850698343 0 131.0786850698343 0 21.375175252488248 0 0 0 0.9247425010840047 0 0.805462187404089 0 {I|L}[{I|L}P]{[MG]|[TS]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.9108 - 113 + NaN NaN 126151.9 NaN 17849 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22122 89.27 NaN 381360 35 0 53752 0.261 + 26762 SYFPTVPGVYI 11 86 621.8245186436953 1241.6344843541906 2 622.3475341796875 MULTI HCD FTMS 0 0 0 22116 46021.859375 0.4134075812890267 3 -0.08539581298828125 6 Unmodified _SYFPTVPGVYI_ ENSG00000136068|ENST00000295956|FLNB;ENST00000477629.1_1_3:58135593-58136214:+|nuORF;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 27.628801355627647 0.21662447369784368 2 V[TP]C[Y{I|L}] 6 7 21.242 0 0 1.7108 0 0 547.3016877535864 0 547.3016877535864 0 4.320638037294849 0 0 0 1.774227503252014 0 0.4247425010840047 0 V[TP]C[Y{I|L}] 1.7108 - 424 + NaN NaN 168245.5 NaN 17850 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22123 89.273 NaN 124640 35 0 10340 0.261 + 16018 LPRVCPPASLF 11 57 600.3341475384078 1198.6537421436155 2 600.3343505859375 MULTI HCD FTMS 0 0 0 22116 49734.8359375 0.1507086983633367 25 -0.6548233032226562 7 Unmodified _LPRVCPPASLF_ REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF 5.296884461304476 0.39569033063702824 2 {M(Oxidation (M))|F} 1 -1 2.7642 0 0 0.23061 0 0 571.3383867742781 477.23151575260005 1048.5699025268782 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.23061 + + 15 + NaN NaN 128560.3 NaN 17851 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22124 89.277 NaN 123910 35 0 5746.8 0.264 -1 0 45 422.58190287925765 1264.723879237973 3 422.58172607421875 MULTI HCD FTMS 0 0 0 22116 74719.0625 0.39479112359378954 -15 0.3631439208984375 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 123299.6 NaN 17852 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22125 89.28 NaN 165060 35 0 34453 0.261 -1 FPSWAMELL 9 41 555.2702112393592 1108.5258695455184 2 555.2700805664062 MULTI HCD FTMS 0 0 0 22116 85623.7265625 0.4367930005590715 -2 0.045806884765625 9 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F}E{I|L}{I|L} 4 -1 36.23 0 0 3.2683 0 0 588.2699452130875 0 588.2699452130875 0 17.813572109354748 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}E{I|L}{I|L} 3.2683 + + 36 NaN NaN 120479.5 NaN 17853 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22126 89.283 NaN 181260 35 0 38488 0.261 + 30802 VPTYPKVIE 9 55 523.2997865584753 1044.5850201837504 2 523.2817993164062 MULTI HCD FTMS 0 0 0 22116 32230.802734375 0.3512978086413682 -2 0.045806884765625 10 Unmodified _VPTYPKVIE_ REV__ENSG00000065615|ENST00000369681|CYB5R4 4.75600775471527 0.31496297302216103 2 EV 2 -1 10.969 0 0 1.0501 0 0 131.13174243585473 682.3190401666624 813.4507826025172 0 0 0 0 0 0 0 0 0 EV 1.0501 - 10 + NaN NaN 126748.4 NaN 17854 4270 22116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22128 89.288 NaN 1142600 35 0 301550 0.327 -1 0 47 565.8268344702751 1129.6391160073501 2 565.8269653320312 MULTI HCD FTMS 0 0 0 22127 1048489.75 0.7763036276445646 -1 0.0362396240234375 1 NaN NaN 2 Y{I|L}V{I|L} 4 -1 46.186 0 0 4.0885 0 0 623.3261585919937 0 623.3261585919937 0 35.38872836444014 0 0 0 1.4247425010840047 0 0 0 Y{I|L}V{I|L} 4.0885 - 47 NaN NaN 279652.6 NaN 17855 4271 22127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22129 89.293 NaN 837930 35 0 85175 0.261 + 3681 ELPEQFFQL 9 96 575.7925666818774 1149.5705804305546 2 575.7926635742188 MULTI HCD FTMS 0 0 0 22127 406765.46875 0.5823630782964004 -1 0.0362396240234375 2 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 118.0683919894846 0.0016252157255221692 2 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 86.492 0 0 7.5239 7.5239 91.239 0 0 0 30.183115237025646 16.47817481888636 16.47817481888636 9.208187539523749 0 2.305462187404089 0.9208187539523752 2.137591837382481 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[AG]{I|L} 7.5239;6.7228;6.7228;4.8983;4.0972;4.0972;3.7443;3.1606;2.9432;2.9432 +;-;-;-;-;-;-;-;-;- + 1213 NaN NaN 225467.8 NaN 17856 4271 22127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22130 89.296 NaN 841920 35 0 46842 0.261 + 29220 TYLEGECLELL 11 113 641.8154850926732 1281.6164172521462 2 641.8156127929688 MULTI HCD FTMS 0 0 0 22127 178723.046875 0.3982242854712766 4 -0.1082611083984375 3 Unmodified _TYLEGECLELL_ ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F 93.16586880292088 0.012141012152160733 2 EWC{I|L}E{I|L}{I|L} 7 5 77.792 0 0 6.0699 0 0 377.19453627754064 0 377.19453627754064 0 70.70373749842277 0 0 0 2.4916440611282624 0 0.9634679910804405 0 EWC{I|L}E{I|L}{I|L} 6.0699 - 577 NaN NaN 226272.3 NaN 17857 4271 22127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22131 89.3 NaN 202650 35 0 6629.5 0.262 + 28883 TVYLLLLMI 9 76 539.8325651388692 1077.6505773445383 2 539.8328857421875 MULTI HCD FTMS 0 0 0 22127 140793.21875 0.7915278755757195 -2 0.0558013916015625 4 Unmodified _TVYLLLLMI_ ENST00000522519.5_1_8:72964806-72964878:+|nuORF 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.2972 0 0 912.5718094996149 0 912.5718094996149 0 5.307262395435968 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.2972 + + 63 + NaN NaN 122624.4 NaN 17858 4271 22127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22132 89.303 NaN 232700 35 0 19282 0.261 + 7555 FYATSIFQL 9 62 545.2846490947747 1088.5547452563494 2 545.7760009765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FYATSIFQL_ ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36 22.736283301280096 0.1639198954644489 2 [YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}T 7 6 30.194 0 0 2.7738 0 0 0 218.0963461687119 218.0963461687119 -1.4418401791016322 0 -1.4418401791016322 0 0 0 1.6989700043360187 0.3494850021680094 0 [YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}T 2.7738 - 289 NaN NaN 131821.8 NaN 17859 4271 22127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22133 89.306 NaN 151620 35 0 20250 0.261 -1 0 54 549.2990270507718 548.2917505841717 1 549.2986450195312 MULTI HCD FTMS 0 0 0 22127 17144.953125 0.13080751401385185 -9 0.246124267578125 6 NaN NaN 2 {I|L}{[{M(Oxidation (M))|F}D]|MM} 3 -1 8.072 0 0 1.4722 0 0 155.1409154785061 0 155.1409154785061 0 3.4678748622465623 0 0 0 0 0 0 0 {I|L}{[{M(Oxidation (M))|F}D]|MM} 1.4722 - 10 + NaN NaN 124037.6 NaN 17860 4271 22127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22135 89.311 NaN 2202700 35 0 197600 0.327 -1 0 109 611.3717896405319 610.3645131739319 1 611.3565063476562 MULTI HCD FTMS 0 0 0 22134 199132.84375 0.5007939141318445 -8 0.2098236083984375 1 NaN NaN 2 V 1 -1 3.9794 0 0 0.65197 0 0 284.17101049863163 224.09754358463127 508.26855408326287 0 0 0 0 0 0 0 0 0 V 0.65197 - 21 + NaN NaN 431260.2 NaN 17861 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22136 89.316 NaN 335070 35 0 13580 0.261 + 21418 PVRPPSPRR 9 83 531.3192155051822 1060.6238780771644 2 531.3193359375 MULTI HCD FTMS 0 0 0 22134 190048.71875 0.6035044498035839 4 -0.1016387939453125 2 Unmodified _PVRPPSPRR_ REV__ENST00000372684.7_1_1:41113455-41131276:-|nuORF 6.2057823575117 0.30397260197431997 2 R[PA]{I|L}Q{[QN]|[E{I|L}]|[KN]} 7 -1 8.9963 0 0 0.84821 0 0 235.13597304511876 0 235.13597304511876 0 4.3922007790624935 0 0 0 0 0 0 0 R[PA]{I|L}Q{[QN]|[E{I|L}]|[KN]} 0.84821 - 61 NaN NaN 154605.6 NaN 17862 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22137 89.319 NaN 280330 35 0 14238 0.261 -1 0 87 597.8563626585645 1193.698172383929 2 597.8565673828125 MULTI HCD FTMS 0 0 0 22134 315412.9375 0.11079612391058094 48 -1.19671630859375 3 NaN NaN 2 W 1 -1 12.764 0 0 1.0693 0 0 989.6088912333415 0 989.6088912333415 0 5.774509799928715 0 0 0 0 0 0 0 W 1.0693 - 137 + NaN NaN 141599.7 NaN 17863 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22138 89.323 NaN 350980 35 0 41758 0.261 + 10889 IWDETPLYF 9 64 592.2868806334895 1182.559208333779 2 592.785888671875 MULTI HCD FTMS 0 0 0 22134 122673.625 0.0839419564032376 40 -0.9972152709960938 4 Unmodified _IWDETPLYF_ ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 26.88365393820708 0.12808753336095696 2 T[{I|L}P]Y{M(Oxidation (M))|F} 5 4 31.114 0 0 2.6311 0 0 543.2333851544937 0 543.2333851544937 0 4.203103093438969 0 0 0 1.1549471895720984 0 0.2742275032520141 0 + T[{I|L}P]Y{M(Oxidation (M))|F} 2.6311 + + 253 NaN NaN 145746.9 NaN 17864 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22139 89.326 NaN 552700 35 0 108280 0.261 + 19843 NYAWVYYHL 9 66 614.7939306802512 1227.5733084273022 2 614.7926025390625 MULTI HCD FTMS 0 0 0 22134 75946.15625 0.832934592783393 30 -0.7794952392578125 5 Unmodified _NYAWVYYHL_ ENSG00000119917|ENST00000371818|IFIT3 45.69961567697781 0.039180348357221985 2 [YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L} 10 4 + 49.799 0 0 4.0567 4.0567 83.13 0 0 0 5 2.4472749489669354 2.4472749489669354 5 0 1.3494850021680094 1.3979400086720375 0 0.566901560044258 [YN]AWV[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))G]|[NC]}{I|L};[YN]AWV[{M(Oxidation (M))|F}V]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[NS]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]VWA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]A[{M(Oxidation (M))|F}V]V[MT]{[{M(Oxidation (M))|F}H]|[RQ]};[NS]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]V[MT]{[{M(Oxidation (M))|F}H]|[RQ]} 4.0567;3.6494;2.6727;2.2191;0.83508 -;-;-;-;- 184 NaN NaN 177363.2 NaN 17865 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22140 89.329 NaN 88020 35 0 30326 0.261 + -1 LCCLHLLCRS 10 39 637.8119251751956 1273.609297417191 2 637.812255859375 MULTI HCD FTMS 0 0 0 22134 51676.21484375 0.4939373424325469 -8 0.2098236083984375 6 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))CLHLLC(Carbamidomethyl (C))RS_ REV__nc|ENSG00000177030|O75398-5|DEAF1 1.6526216038709556 0.46655611578153744 2 AS 2 -1 20.969 0 0 1.6464 0 0 1097.5015077525159 0 1097.5015077525159 0 18.494850021680094 0 0 0 0 0 0 0 AS 1.6464 - 3 NaN NaN 111238 NaN 17866 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22141 89.333 NaN 126020 35 0 12202 0.262 + 22624 QVHTTTWLL 9 45 549.8010223155268 NaN 0 549.8018188476562 PEAK HCD FTMS 0 0 0 22134 16340.27734375 0.11258630939436363 -25 0.6188507080078125 7 Unmodified _QVHTTTWLL_ REV__ENST00000373812.7_2_1:29070205-29070289:+|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L}N{I|L}{I|L} 4 -1 17.167 0 0 1.5641 0 0 132.09896153972244 509.16883264713124 641.2677941868537 0 0 0 0 0 0 0 0 0 {I|L}N{I|L}{I|L} 1.5641 - 41 + NaN NaN 117301 NaN 17867 4272 22134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22143 89.338 NaN 200180 35 0 75052 0.327 + 6858 FPTISLEF 8 40 477.25280601839614 952.4910591035923 2 477.252685546875 MULTI HCD FTMS 0 0 0 22142 155833.890625 0.5338606508780085 1 -0.0328521728515625 1 Unmodified _FPTISLEF_ ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1 36.04419817259434 0.28174663821216267 2 S{I|L}E{M(Oxidation (M))|F} 4 4 47.18 0 0 4.9534 0 0 458.2540455548844 0 458.2540455548844 0 47.180475292681265 0 0 0 1.25 0 0.4247425010840047 0 + S{I|L}E{M(Oxidation (M))|F} 4.9534 + + 19 NaN NaN 129839.7 NaN 17868 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22144 89.342 NaN 269040 35 0 56151 0.261 + 30916 VRDLKVLACPF 11 57 630.8607387549225 1259.706924576645 2 630.8606567382812 MULTI HCD FTMS 0 0 0 22142 66210.5625 0.1822474221359338 -24 0.605987548828125 2 Unmodified _VRDLKVLACPF_ ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant 2.498486711656943 0.4079631525365919 2 N 1 11 3.9794 0 0 0.3159 0 0 683.3481121760575 459.2985789168363 1142.646691092894 0 0 0 0 0 0 0 0 0 N 0.3159 - 22 + NaN NaN 134828.8 NaN 17869 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22145 89.345 NaN 467250 35 0 82795 0.261 + 5248 FFDPSLLHLL 10 60 601.3348091558761 NaN 0 601.3350219726562 PEAK HCD FTMS 0 0 0 22142 243922.328125 0.15990937863946555 -4 0.10495758056640625 3 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 81.89019881105858 0.009657962560997187 2 YDP{[TV]|[{I|L}S]}{I|L}H 7 4 39.429 0 0 3.284 0 0 131.09212622037722 241.15549646549064 372.2476226858679 0 0 0 0 0 2.2302046884880937 0 0.3807196863200844 0 YDP{[TV]|[{I|L}S]}{I|L}H 3.284 - 100 + NaN NaN 168109 NaN 17870 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22146 89.349 NaN 163080 35 0 17676 0.261 + 13670 KYPENFFLL 9 50 585.8136157652201 NaN 0 585.8134155273438 PEAK HCD FTMS 0 0 0 22142 126192.2890625 0.962275776865819 67 -1.6601028442382812 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 8 20.969 0 0 1.7928 0 0 131.0952004432732 775.341009075972 906.4362095192453 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7928 - 12 + NaN NaN 110701.6 NaN 17871 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22147 89.352 NaN 196250 35 0 19399 0.261 + 17499 LYTELFTGF 9 55 545.775624693774 1089.536696454348 2 546.278564453125 MULTI HCD FTMS 0 0 0 22142 28570.42578125 0.34376979641332117 1 -0.0328521728515625 5 Unmodified _LYTELFTGF_ ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1 37.97399986684836 0.07464525285885698 2 [YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}TG{M(Oxidation (M))|F} 9 2 + 72.585 0 0 6.662 6.662 92.352 0 0 0 6.4928876664371415 6.4928876664371415 6.4928876664371415 18.226825097560422 0 2.274227503252014 2 0 0 [YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}TG{M(Oxidation (M))|F};[YT]{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F}SA{M(Oxidation (M))|F};[WR]{[RE]|[WV]}[EP]A{M(Oxidation (M))|F} 6.662;4.9891;0.44923 -;-;- 252 + NaN NaN 125640.8 NaN 17872 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22148 89.355 NaN 94713 35 0 9146.5 0.261 -1 MLHAMLPF 8 41 488.2436794163529 974.4728058995058 2 488.24371337890625 MULTI HCD FTMS 0 0 0 22142 37608.140625 0.5092586774115946 1 -0.0328521728515625 6 Oxidation (M) _MLHAM(Oxidation (M))LPF_ ENST00000416848.6_1_12:44124204-44124234:-|nuORF 17.086550045450526 0.4680768486079041 2 PE 2 -1 25.969 0 0 2.6649 0 0 730.3498221798694 0 730.3498221798694 0 3.979400086720375 0 0 0 0.5 0 0 0 PE 2.6649 - 4 NaN NaN 102150.2 NaN 17873 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22149 89.359 NaN 95602 35 0 8098.9 0.261 -1 CHHWPLLSL 9 47 581.7950586354849 1161.5755643377697 2 581.794189453125 MULTI HCD FTMS 0 0 0 22142 45041.98046875 0.6854055988957185 1 -0.0328521728515625 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))HHWPLLSL_ ENST00000487903.5_1_13:113536502-113536748:+|nuORF 11.640296217721598 0.25978676193971967 2 {I|L}S{I|L} 3 -1 22.205 0 0 1.9116 0 0 830.3657692711666 0 830.3657692711666 0 9.017412290202671 0 0 0 1.1747425010840047 0 0 0 {I|L}S{I|L} 1.9116 + + 16 + NaN NaN 103512.5 NaN 17874 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22150 89.362 NaN 129330 35 0 16437 0.261 + 12798 KYDVLFALF 9 58 558.3103858889295 1114.606218844659 2 558.3107299804688 MULTI HCD FTMS 0 0 0 22142 57160.640625 0.017369944718248282 63 -1.5486221313476562 8 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 20.41453444215458 0.18397929046831515 2 S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 6 4 49.558 0 0 4.4462 0 0 418.21980483222814 0 418.21980483222814 0 40.97418457616534 0 0 0 1.3807196863200843 0 0 0 S{I|L}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 4.4462 - 65 NaN NaN 128424.9 NaN 17875 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22151 89.365 NaN 71282 35 0 17963 0.263 + 25210 SAPCAPFF 8 38 420.19141751490747 838.368282096615 2 420.19140625 MULTI HCD FTMS 0 0 0 22142 39600.37890625 0.48285269209138143 11 -0.28849029541015625 9 Unmodified _SAPCAPFF_ REV__ENST00000514463.1_1_3:126160334-126160817:-|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.847 0 0 673.2893921813791 0 673.2893921813791 0 5.0269751594335315 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.847 + + 11 + NaN NaN 118002.4 NaN 17876 4273 22142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22153 89.37 NaN 888020 35 0 38810 0.327 -1 0 104 633.3694187770183 1264.7242846208364 2 633.3693237304688 MULTI HCD FTMS 0 0 0 22152 1110351 0.8611112753728194 -6 0.16405487060546875 1 NaN NaN 2 {[HG]|PP}N 3 -1 11.043 0 0 0.87316 0 0 0 953.5178963186421 953.5178963186421 2.6317404843692334 0 0 0 0 0.6861818737241735 0 0 0 {[HG]|PP}N 0.87316 - 77 + NaN NaN 220528.1 NaN 17877 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22154 89.375 NaN 669830 35 0 227600 0.264 -1 0 42 405.1187845815165 808.223016229833 2 405.11895751953125 MULTI HCD FTMS 0 0 0 22152 183690.234375 0.13968787330541266 22 -0.5759429931640625 2 NaN NaN 2 [C(Carbamidomethyl (C))M]G 3 -1 7.4473 0 0 0.92144 0 0 0 457.10583418321113 457.10583418321113 3.4678748622465623 0 0 0 0 0 0 0 0 [C(Carbamidomethyl (C))M]G 0.92144 - 20 NaN NaN 191388.8 NaN 17878 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22155 89.378 NaN 153720 35 0 44908 0.261 -1 0 46 606.3694151439407 1210.7242773546814 2 606.3699340820312 MULTI HCD FTMS 0 0 0 22152 37096.2890625 0.08326620002440999 31 -0.7821197509765625 3 NaN NaN 2 K 1 -1 3.9794 0 0 0.32868 0 0 393.32408311815635 686.2846773736936 1079.60876049185 0 0 0 0 0 0 0 0 0 K 0.32868 - 24 + NaN NaN 129770.8 NaN 17879 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22156 89.382 NaN 319940 35 0 67401 0.262 + 23717 RQRELVLS 8 56 500.7998388563428 NaN 0 500.7901916503906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RQRELVLS_ REV__ENSG00000141519|ENST00000397545|CCDC40;REV__ENST00000574799.5_1_17:78022329-78073571:+|nuORF;REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40 10.073929032068715 0.38822285293237185 2 SVEK 4 -1 20.918 0 0 2.0926 0 0 131.10996975919733 422.20591150455317 553.3158812637505 0 0 0 0 0 0 0 0.3494850021680094 0 SVEK 2.0926 - 84 + NaN NaN 141386.8 NaN 17880 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22157 89.385 NaN 105950 35 0 9773.7 0.261 -1 FSWGLKCIF 9 44 579.2932593754385 NaN 0 579.2919921875 PEAK HCD FTMS 0 0 0 22152 18272.9921875 0.47115894125447566 -14 0.37723541259765625 5 Carbamidomethyl (C) _FSWGLKC(Carbamidomethyl (C))IF_ ENST00000373204.5_1_1:36387703-36387838:+|nuORF 2.302733041254933 0.2840881193086663 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.34407 0 0 447.4268374991207 559.0432833307249 1006.4701208298457 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.34407 + + 2 + NaN NaN 111856.3 NaN 17881 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22158 89.388 NaN 43958 35 0 9191.7 0.262 + 22625 QVHTYFAC 8 26 484.7185596845198 967.4225664358396 2 484.71875 MULTI HCD FTMS 0 0 0 22152 24009.857421875 0.5751248258912506 8 -0.2163848876953125 6 Unmodified _QVHTYFAC_ REV__ENSG00000172538|ENST00000311787|FAM170B 0.7936320650641473 0.540814922690045 2 P 1 -1 5.4846 0 0 0.56692 0 0 696.3550138008771 170.9966982477172 867.3517120485943 0 0 0 0 0 0 0 0 0 P 0.56692 - 3 + NaN NaN 98918.6 NaN 17882 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22159 89.392 NaN 47600 35 0 4729.4 0.261 + 33889 YLNGGDLMYHI 11 36 648.30908203125 NaN 0 648.30908203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YLNGGDLMYHI_ ENSG00000065675|ENST00000263125|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;nc|ENSG00000065675|Q04759-3|PRKCQ 4.897010918128616 0.3282287337590871 2 {I|L} 1 10 5.4846 0 0 0.42365 0 0 163.07304608571468 1015.4287203424436 1178.5017664281584 0 0 0 0 0 0 0 0 0 + {I|L} 0.42365 + + 1 + NaN NaN 91885.4 NaN 17883 4274 22152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22161 89.397 NaN 840820 35 0 31861 0.327 -1 0 115 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22160 860966.1875 0.45854126224563957 -25 0.6455764770507812 1 NaN NaN 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}SQV 7 -1 16.581 0 0 1.3396 0 0 130.21814895496874 268.1235445611938 398.34169351616254 0 0 0 0 0 0.25 0 0 0.8921590589602532 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}SQV 1.3396 - 483 + NaN NaN 217833.4 NaN 17884 4275 22160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22162 89.401 NaN 420850 35 0 13881 0.261 -1 0 91 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 22160 339047.59375 0.06766225185882926 51 -1.2675094604492188 2 NaN NaN 2 Q 1 -1 12.474 0 0 1.0601 0 0 546.3255935917506 499.274561858832 1045.6001554505826 0 0 0 0 0 0.8494850021680094 0 0 0 Q 1.0601 - 201 + NaN NaN 156631.9 NaN 17885 4275 22160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22163 89.405 NaN 787780 35 0 36456 0.261 -1 0 116 641.8826567312225 1281.7507605292449 2 641.88232421875 MULTI HCD FTMS 0 0 0 22160 454425.78125 0.8003389117069454 3 -0.065399169921875 3 NaN NaN 2 [YT]{I|L}EWC{I|L}E{I|L} 9 -1 37.133 0 0 2.8971 0 0 0 128.2056231714786 128.2056231714786 18.266254835710892 0 0 0 0 0 0.8860566476931632 0.8921590589602532 0 [YT]{I|L}EWC{I|L}E{I|L} 2.8971 - 633 NaN NaN 218214.1 NaN 17886 4275 22160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22164 89.408 NaN 109500 35 0 6023.4 0.264 -1 0 53 407.90650160105304 1220.6976754033592 3 407.90655517578125 MULTI HCD FTMS 0 0 0 22160 88294.9140625 0.2616218759080115 -22 0.5669097900390625 4 NaN NaN 2 C 1 -1 4.6041 0 0 0.37717 0 0 710.8936420555061 403.7644137018188 1114.658055757325 0 0 0 0 0 0 0 0 0 C 0.37717 - 6 + NaN NaN 106202.9 NaN 17887 4275 22160 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22166 89.413 NaN 1075800 35 0 262540 0.327 -1 0 58 565.8268344702751 1129.6391160073501 2 565.8267822265625 MULTI HCD FTMS 0 0 0 22165 579725.875 0.42923004235560663 4 -0.11486053466796875 1 NaN NaN 2 Y{I|L}V{I|L} 4 -1 46.186 0 0 4.0885 0 0 623.3255482404312 0 623.3255482404312 0 31.237125054200234 0 0 0 1.4247425010840047 0 0 0 Y{I|L}V{I|L} 4.0885 - 55 NaN NaN 256627.5 NaN 17888 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22167 89.417 NaN 391000 35 0 88876 0.263 -1 LACCKGTG 8 57 426.1914335144471 850.3683140956942 2 426.1913757324219 MULTI HCD FTMS 0 0 0 22165 178899.640625 0.3504952451191045 1 -0.03289031982421875 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LAC(Carbamidomethyl (C))CKGTG_ ENST00000284136.10_1_7:84710854-84710890:-|nuORF 2.302733041254933 0.5385759549224092 2 K 1 -1 12.474 0 0 1.4669 0 0 704.2595169538959 0 704.2595169538959 0 3.8907562519182193 0 0 0 0 0 0 0 K 1.4669 + + 17 + NaN NaN 147362 NaN 17889 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22168 89.421 NaN 448290 35 0 185670 0.261 -1 0 74 628.3829282546999 627.3756517880998 1 628.3829345703125 MULTI HCD FTMS 0 0 0 22165 162422.5625 0.24648202052277204 -24 0.6126937866210938 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 2.2185 0 0 0.35361 0 0 209.15529763946546 268.1229647272094 477.2782623666749 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.35361 - 2 + NaN NaN 168247.8 NaN 17890 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22169 89.424 NaN 279810 35 0 13558 0.261 + 3965 EQLVAVELKTN 11 84 622.3475807826734 1242.6806086321467 2 622.34716796875 MULTI HCD FTMS 0 0 0 22165 152650.984375 0.5141382367007795 -18 0.45856475830078125 4 Unmodified _EQLVAVELKTN_ REV__ENST00000438948.1_1_22:20287467-20300466:+|nuORF 4.189502756095605 0.4005469306127019 2 [YN]{I|L}R 4 -1 17.625 0 0 1.4183 0 0 0 693.3621021226342 693.3621021226342 8.79538684718163 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L}R 1.4183 - 197 NaN NaN 141026.7 NaN 17891 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22170 89.428 NaN 293060 35 0 56300 0.261 -1 FPSWAMELL 9 61 555.2702112393592 1108.5258695455184 2 555.2701416015625 MULTI HCD FTMS 0 0 0 22165 112609.578125 0.5744561407871732 4 -0.11486053466796875 5 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}E{I|L}{I|L} 4 -1 38.162 0 0 3.4426 0 0 588.2684193341812 0 588.2684193341812 0 22.704262829037845 0 0 0 1.0994850021680094 0 0 0 {M(Oxidation (M))|F}E{I|L}{I|L} 3.4426 + + 60 NaN NaN 129685.6 NaN 17892 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22171 89.431 NaN 289580 35 0 71525 0.261 + 30803 VPTYPKVIE 9 47 523.2997865584753 1044.5850201837504 2 523.2820434570312 MULTI HCD FTMS 0 0 0 22165 23405.56640625 0.25510764520166057 4 -0.11486053466796875 6 Unmodified _VPTYPKVIE_ REV__ENSG00000065615|ENST00000369681|CYB5R4 7.910154910731844 0.2910521888787154 2 EVYYV{[QN]|[E{I|L}]|[KN]} 7 -1 21.783 0 0 2.0853 0 0 131.12563863190672 0 131.12563863190672 0 21.782891498745585 0 0 0 0 0 0.5 0.3807196863200844 EVYYV{[QN]|[E{I|L}]|[KN]} 2.0853 - 36 + NaN NaN 132567.3 NaN 17893 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22172 89.434 NaN 209030 35 0 11871 0.263 -1 0 61 422.58190287925765 1264.723879237973 3 422.58221435546875 MULTI HCD FTMS 0 0 0 22165 130781.203125 0.6910051652035432 -9 0.23276519775390625 7 NaN NaN 2 Y 1 -1 0.088644 0 0 0.0070089 0 0 715.4561923256668 383.1912020318969 1098.6473943575638 0 0 0 0 0 0 0 0 0 Y 0.0070089 - 2 + NaN NaN 123288.4 NaN 17894 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22173 89.438 NaN 202920 35 0 31227 0.261 + 14739 LHRSPFLF 8 52 508.78838994460637 1015.5622269560128 2 508.77630615234375 MULTI HCD FTMS 0 0 0 22165 13592.37109375 0.3708571164255638 4 -0.11486053466796875 8 Unmodified _LHRSPFLF_ ENST00000294189.10_2_3:52029896-52029950:-|nuORF 15.768221252438446 0.4777766048089751 2 {I|L}AG[PS]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 2 41.904 0 0 4.1262 0 0 165.105115077466 0 165.105115077466 0 12.211309630365577 0 0 0 0 0 1.1549471895720984 0 {I|L}AG[PS]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.1262 - 165 + NaN NaN 123046.5 NaN 17895 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22174 89.441 NaN 57657 35 0 5589.7 0.261 + 31043 VSSPFIVSL 9 38 474.77374910791224 947.5329452826245 2 474.7739562988281 MULTI HCD FTMS 0 0 0 22165 7335.56005859375 0.0034730697538220678 48 -1.1988906860351562 9 Unmodified _VSSPFIVSL_ ENSG00000114124|ENST00000682958|GRK7 6.723162845929126 0.3000504726104499 2 W{I|L} 2 8 25.217 0 0 2.6613 0 0 630.3365343641296 0 630.3365343641296 0 22.74227503252014 0 0 0 0.4247425010840047 0 0 0 W{I|L} 2.6613 - 8 NaN NaN 94260.8 NaN 17896 4276 22165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22176 89.446 NaN 1323100 35 0 117100 0.327 + 3682 ELPEQFFQL 9 95 575.7925666818774 1149.5705804305546 2 575.792724609375 MULTI HCD FTMS 0 0 0 22175 432440.96875 0.6191224995490169 5 -0.14098358154296875 1 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 106.94017166704063 0.003441928997083001 2 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 78.443 0 0 6.8237 6.8237 86.981 0 0 0 17.42468374311285 51.98059641722287 17.42468374311285 3.881801713828821 0 2.2614393726401687 1.154901959985743 1.7447026752325154 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]GA{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[EP]GA{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};[EP][AG]{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L} 6.8237;6.486;6.0227;5.6888;4.861;4.06;4.06;3.797;3.4663;2.996 +;-;-;-;-;-;-;-;-;- + 3128 NaN NaN 292203.2 NaN 17897 4277 22175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22177 89.45 NaN 121040 35 0 13756 0.261 + -1 LMKKKKMR 8 53 539.8325651388692 1077.6505773445383 2 539.8328247070312 MULTI HCD FTMS 0 0 0 22175 56420.10546875 0.31718918437922083 4 -0.11147308349609375 2 Oxidation (M) _LMKKKKM(Oxidation (M))R_ REV__ENST00000452510.6_2_5:134102740-134109419:+|nuORF 0.7936320650641473 0.540814922690045 2 Q{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.8782 0 0 118.22509329619909 681.2735079400999 799.498601236299 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F} 0.8782 - 34 + NaN NaN 109523.3 NaN 17898 4277 22175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22178 89.454 NaN 62404 35 0 9388.1 0.261 + -1 NAAFALWQVF 10 47 604.8084716796875 NaN 0 604.8084716796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))NAAFALWQVF_ REV__ENST00000482611.5_1_10:103552686-103559078:-|nuORF 8.745405648335112 0.33269943387702366 2 W 1 -1 11.747 0 0 0.97279 0 0 629.3205389630874 389.1811922662719 1018.5017312293594 0 0 0 0 0 0.8252574989159953 0 0 0 W 0.97279 + + 6 + NaN NaN 99334.4 NaN 17899 4277 22175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22179 89.457 NaN 126440 35 0 30504 0.263 + 30449 VLPSWPTVT 9 41 500.27916214125617 998.5437713493124 2 500.2794494628906 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VLPSWPTVT_ ENST00000321265.9_1_1:27272697-27272868:+|nuORF 3.944395688203298 0.32111559684428237 2 V{I|L} 2 7 18.583 0 0 1.8611 0 0 0 783.3635347955686 783.3635347955686 3.098943791441968 0 0 0 0 0 0 0 0 + V{I|L} 1.8611 + + 9 + NaN NaN 120964.4 NaN 17900 4277 22175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22181 89.462 NaN 2636700 35 0 233380 0.327 -1 0 100 611.3717896405319 610.3645131739319 1 611.356689453125 MULTI HCD FTMS 0 0 0 22180 241066.46875 0.6062516769097989 -2 0.04914093017578125 1 NaN NaN 2 V 1 -1 3.0989 0 0 0.50772 0 0 284.1707399542293 224.09743677310783 508.26817672733716 0 0 0 0 0 0 0 0 0 V 0.50772 - 26 + NaN NaN 493058.8 NaN 17901 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22182 89.466 NaN 990090 35 0 125220 0.261 + 14499 LFAVFQTTF 9 72 537.286881680068 1072.5592104269358 2 537.2870483398438 MULTI HCD FTMS 0 0 0 22180 325992.25 0.2081404317292731 -7 0.1736602783203125 2 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 122.17920374332846 0.0010792739174387011 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 9 0 + 86.212 0 0 8.0379 8.0379 92.1 0 0 0 1.9891752680315165 74.78499242097519 1.9891752680315165 9.208187539523749 0 3.0387254899964358 0 0.7742275032520141 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[VA]|[{I|L}G]}{I|L}{M(Oxidation (M))|F} 8.0379;7.1794;2.1335 +;-;- + 444 NaN NaN 246475.3 NaN 17902 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22183 89.47 NaN 441190 35 0 39782 0.261 + 19673 NVTWVIVNL 9 71 529.3057902965227 1056.5970276598453 2 529.3060913085938 MULTI HCD FTMS 0 0 0 22180 172009.78125 0.7355090147178289 -3 0.065399169921875 3 Unmodified _NVTWVIVNL_ ENSG00000102753|ENST00000261667|KPNA3 90.13494162714682 0.004522430935000059 2 {[QV]|[N{I|L}]|[RA]|[KV]}SWV{I|L}VN{I|L} 9 2 + 68.94 0 0 6.5247 6.5247 85.172 0 0 0 0.7694694512639444 10.183809140316967 0.7694694512639444 0.7694694512639444 0 2.1237125054200234 1.0457574905606752 1.3539171939081172 0.3494850021680094 {[QV]|[N{I|L}]|[RA]|[KV]}SWV{I|L}VN{I|L};{[NV]|[RG]}TWV{I|L}VN{I|L};[KG]EWV{I|L}VN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}SWV{I|L}VGG{I|L};{[NV]|[RG]}TWV{I|L}VGG{I|L};[KA]DWV{I|L}VN{I|L};[KG]EWV{I|L}VGG{I|L};[KA]DWV{I|L}VGG{I|L};[WK]{[DA]|[EG]}V{I|L}VN{I|L} 6.5247;6.4519;5.765;5.6532;5.5804;5.4317;4.8935;4.5602;3.9541 -;+;-;-;-;-;-;-;- + 180 NaN NaN 161612.3 NaN 17903 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22184 89.473 NaN 213360 35 0 11323 0.261 -1 0 80 597.8563626585645 1193.698172383929 2 597.8569946289062 MULTI HCD FTMS 0 0 0 22180 156181.25 0.054862293426088206 54 -1.3158950805664062 4 NaN NaN 2 A 1 -1 6.2814 0 0 0.52622 0 0 193.1335804991275 926.5214327447874 1119.655013243915 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.52622 - 44 + NaN NaN 117781.1 NaN 17904 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22185 89.477 NaN 363030 35 0 50672 0.261 -1 0 57 549.2990270507718 548.2917505841717 1 549.29931640625 MULTI HCD FTMS 0 0 0 22180 66121.1171875 0.5044714266674583 -2 0.04914093017578125 5 NaN NaN 2 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3 -1 24.437 0 0 4.4569 0 0 0 205.05881536372172 205.05881536372172 6.148481219398079 0 0 0 0 0 1.6989700043360187 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4.4569 - 22 NaN NaN 146165.1 NaN 17905 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22186 89.48 NaN 209880 35 0 20444 0.261 + 19875 NYCNLFNYI 9 59 582.2631558525982 1162.5117587719963 2 582.2634887695312 MULTI HCD FTMS 0 0 0 22180 46887.8984375 0.3622750287325794 -2 0.04914093017578125 6 Unmodified _NYCNLFNYI_ ENSG00000100129|ENST00000652021|EIF3L 107.99703571036002 0.003269392969029945 2 [YN]CN{I|L}{M(Oxidation (M))|F}NY{I|L} 9 0 + 88.509 0 0 7.6136 7.6136 91.389 0 0 0 27.138787285696964 75.32129046585631 27.138787285696964 9.208187539523749 0 2.0682503180159344 1.5228787452803376 0 1.372363747448347 + + [YN]CN{I|L}{M(Oxidation (M))|F}NY{I|L};[YN]CN{I|L}{M(Oxidation (M))|F}GGY{I|L} 7.6136;6.8215 +;- + 247 NaN NaN 119799.3 NaN 17906 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22187 89.483 NaN 131990 35 0 32321 0.261 -1 DVMIYIYVEI 10 48 637.3255277665818 1272.6365025999635 2 637.8106689453125 MULTI HCD FTMS 0 0 0 22180 14062.29296875 1 0 0 7 Oxidation (M) _DVM(Oxidation (M))IYIYVEI_ ENST00000526627.1_1_5:150176060-150176195:+|nuORF 6.723162845929126 0.4397169348982109 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.43096 0 0 492.22359521005654 630.3216646783811 1122.5452598884376 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.43096 + + 4 + NaN NaN 111102.7 NaN 17907 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22188 89.487 NaN 100050 35 0 23939 0.264 + -1 GMTFPGLM 8 26 435.1985331855734 NaN 0 435.197998046875 PEAK HCD FTMS 0 0 0 22180 16537.978515625 0.500670580683492 1 -0.032867431640625 8 Oxidation (M) _GM(Oxidation (M))TFPGLM_ REV__ENSG00000164484|ENST00000296978|TMEM200A 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.45825 0 0 305.09767564673433 413.19294153385005 718.2906171805844 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45825 + + 3 + NaN NaN 104737.2 NaN 17908 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22189 89.49 NaN 118030 35 0 11634 0.261 + 28959 TYAMHPVFSM 10 48 592.2688463193192 1182.5231397054383 2 592.270751953125 MULTI HCD FTMS 0 0 0 22180 25602.76171875 0.7656909645922484 -5 0.12450408935546875 9 Unmodified _TYAMHPVFSM_ REV__ZEB2|p.L932V|1|0.33|ENSG00000169554|chr2:144398393-144398393|G/C|missense_variant 6.2057823575117 0.44245551207394906 2 TC(Carbamidomethyl (C)){[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F} 5 -1 21.695 0 0 1.8346 0 0 538.2779459106353 0 538.2779459106353 0 7.001962355242952 0 0 0 0.4247425010840047 0 0 0 TC(Carbamidomethyl (C)){[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F} 1.8346 - 151 NaN NaN 120475.8 NaN 17909 4278 22180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22191 89.495 NaN 2242600 35 0 419160 0.327 + 5249 FFDPSLLHLL 10 79 601.3348091558761 NaN 0 601.3347778320312 PEAK HCD FTMS 0 0 0 22190 991344.625 0.6499007459460062 2 -0.06235504150390625 1 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 149.9946105101851 3.800161172366657E-19 2 YDPS{I|L}{I|L}H 7 4 66.235 0 0 5.5165 0 0 131.0960761082577 241.1560457818969 372.2521218901546 0 0 0 0 0 2.6549471895720984 0 1.0484550065040281 0 YDPS{I|L}{I|L}H 5.5165 - 364 + NaN NaN 438685.8 NaN 17910 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22192 89.499 NaN 302900 35 0 40345 0.261 + 14768 LICNNMVTSTR 11 49 626.315242061423 NaN 0 626.3347778320312 PEAK HCD FTMS 0 0 0 22190 7901.94482421875 0.43423243985265836 -1 0.032867431640625 2 Unmodified _LICNNMVTSTR_ BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF 4.897010918128616 0.3282287337590871 2 {I|L}VV 3 9 12.703 0 0 1.0157 0 0 657.2619405664021 279.10935388736567 936.3712944537679 0 0 0 0 0 0 0 0 0 {I|L}VV 1.0157 - 22 + NaN NaN 147276.9 NaN 17911 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22193 89.503 NaN 179820 35 0 30968 0.261 + 8327 GYFETPFSF 9 40 547.7453678241375 1093.4761827150749 2 547.744873046875 MULTI HCD FTMS 0 0 0 22190 90299.8359375 0.3683096771644335 -1 0.032867431640625 3 Unmodified _GYFETPFSF_ ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant 37.97399986684836 0.07464525285885698 2 ET{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F} 6 3 36.688 0 0 3.3551 0 0 367.1528797834 0 367.1528797834 0 11.281446971601312 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + ET{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F} 3.3551 + + 87 NaN NaN 113779.4 NaN 17912 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22194 89.506 NaN 263710 35 0 66424 0.261 + 2541 DSVLPLLTV 9 49 478.78562151437774 955.5566900955555 2 478.7687072753906 MULTI HCD FTMS 0 0 0 22190 37178.9609375 1 0 0 4 Unmodified _DSVLPLLTV_ REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF 10.823927491677226 0.26684000660059787 2 {I|L}{I|L}{[TV]|[{I|L}S]} 4 -1 20.005 0 0 2.0936 0 0 511.26278858363986 0 511.26278858363986 0 3.80719686320084 0 0 0 0 0 0.3807196863200844 0 {I|L}{I|L}{[TV]|[{I|L}S]} 2.0936 + + 47 + NaN NaN 146771.6 NaN 17913 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22195 89.509 NaN 96784 35 0 9499.3 0.261 -1 KYVDIFCLL 9 47 585.8136157652201 NaN 0 585.8137817382812 PEAK HCD FTMS 0 0 0 22190 50230.390625 0.3830304412419845 73 -1.8434219360351562 5 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ ENSG00000205413|ENST00000379958|SAMD9 12.240655878213236 0.2359303321180293 2 {I|L}{M(Oxidation (M))|F} 2 -1 14.464 0 0 1.2366 0 0 131.09482289581007 775.3486422174436 906.4434651132538 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.2366 + + 7 + NaN NaN 119602.2 NaN 17914 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22196 89.513 NaN 195150 35 0 27575 0.261 -1 MPRLFLDLGPL 11 55 644.3603201633074 1286.7060873934147 2 644.8619384765625 MULTI HCD FTMS 0 0 0 22190 58366.0625 0.625196847494386 7 -0.1901092529296875 6 Oxidation (M) _M(Oxidation (M))PRLFLDLGPL_ LMTK3|p.P1217L|1|0.24|ENSG00000142235|chr19:48497419-48497419|G/A|missense_variant 3.2813086475875832 0.40452996145431686 2 W 1 -1 4.6041 0 0 0.35782 0 0 576.361862395171 521.2583101861936 1097.6201725813646 0 0 0 0 0 0 0 0 0 W 0.35782 - 26 + NaN NaN 126138.1 NaN 17915 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22197 89.516 NaN 43507 35 0 12165 0.264 + 31197 VVLCVFIF 8 26 470.27217825535433 938.5298035775087 2 470.2722473144531 MULTI HCD FTMS 0 0 0 22190 27273.521484375 0.3910089882508377 2 -0.06235504150390625 7 Unmodified _VVLCVFIF_ tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102754.5 NaN 17916 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22198 89.52 NaN 96116 35 0 11795 0.261 + 30501 VMEFLADLL 9 33 525.7806532270043 NaN 0 525.7811889648438 PEAK HCD FTMS 0 0 0 22190 19627.03125 0.43744469931357716 -4 0.0982666015625 8 Unmodified _VMEFLADLL_ ENST00000548527.5_2_12:104238192-104276310:-|nuORF;ENST00000551270.1_1_12:104237536-104277386:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P 3.944395688203298 0.27613285122220627 2 {I|L} 1 8 6.9897 0 0 0.66597 0 0 131.09476447810556 802.3450620208474 933.4398264989529 0 0 0 0 0 0 0 0 0 + {I|L} 0.66597 + + 3 + NaN NaN 109558.4 NaN 17917 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22199 89.523 NaN 68576 35 0 12228 0.261 + -1 KEMRKMDML 9 34 607.2882901585382 NaN 0 607.287841796875 PEAK HCD FTMS 0 0 0 22190 24728.0390625 0.9429076687106284 -2 0.0491180419921875 9 2 Oxidation (M) _KEMRKM(Oxidation (M))DM(Oxidation (M))L_ REV__ENSG00000257923|ENST00000292535|CUX1;REV__nc|ENSG00000257923|P39880-2|CUX1;REV__nc|ENSG00000257923|P39880-3|CUX1;REV__nc|ENSG00000257923|P39880-4|CUX1;REV__nc|ENSG00000257923|P39880-5|CUX1;REV__nc|ENSG00000257923|P39880-6|CUX1 7.608950283845883 0.2583749310551142 2 V 1 -1 11.99 0 0 0.98879 0 0 819.398558000867 291.0714205377563 1110.4699785386233 0 0 0 0 0 0.5 0 0 0 V 0.98879 - 10 + NaN NaN 100729.4 NaN 17918 4279 22190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22201 89.528 NaN 876750 35 0 44804 0.327 -1 0 93 633.3694187770183 1264.7242846208364 2 633.369384765625 MULTI HCD FTMS 0 0 0 22200 1289439.625 1 0 0 1 NaN NaN 2 {[HG]|PP}N 3 -1 10.067 0 0 0.79594 0 0 0 953.5169783195056 953.5169783195056 1.2149861442097016 0 0 0 0 0.7134679910804405 0 0 0 {[HG]|PP}N 0.79594 - 132 + NaN NaN 224358.2 NaN 17919 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22202 89.532 NaN 287480 35 0 93555 0.264 -1 0 40 405.1187845815165 808.223016229833 2 405.118896484375 MULTI HCD FTMS 0 0 0 22200 160811.3125 0.12228951812821226 28 -0.6928253173828125 2 NaN NaN 2 V 1 -1 2.4743 0 0 0.30613 0 0 422.0517343468236 284.0749695837557 706.1267039305793 0 0 0 0 0 0 0 0 0 V 0.30613 - 5 + NaN NaN 128753.7 NaN 17920 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22203 89.536 NaN 469580 35 0 62208 0.261 + 420 AKRRTDLASSR 11 71 630.8607387549225 1259.706924576645 2 630.860595703125 MULTI HCD FTMS 0 0 0 22200 53182.37109375 0.14638676472371823 -17 0.45586395263671875 3 Unmodified _AKRRTDLASSR_ REV__ENSG00000115020|ENST00000264380|PIKFYVE;REV__nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE 2.498486711656943 0.4079631525365919 2 M 1 -1 4.6041 0 0 0.36549 0 0 665.3366986018387 460.30613123111567 1125.6428298329545 0 0 0 0 0 0 0 0 0 M 0.36549 - 49 + NaN NaN 177824.6 NaN 17921 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22204 89.539 NaN 110050 35 0 33675 0.261 -1 0 35 606.3694151439407 1210.7242773546814 2 606.3702392578125 MULTI HCD FTMS 0 0 0 22200 48678.34765625 0.10926324802931443 37 -0.9081878662109375 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 112423.7 NaN 17922 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22205 89.542 NaN 195370 35 0 14104 0.261 + 10024 IEWNGPTGAVE 11 73 586.7837345982281 1171.552916263256 2 586.7836303710938 MULTI HCD FTMS 0 0 0 22200 54975.015625 0.6419274237615615 8 -0.1997528076171875 5 Unmodified _IEWNGPTGAVE_ REV__ENST00000531068.5_1_11:64949924-64950017:+|nuORF 16.565877749689598 0.3127433757948945 2 N[TA]{I|L}EN 6 -1 23.249 0 0 1.9845 0 0 511.2241688459 0 511.2241688459 0 4.024174299985006 0 0 0 0 0 0.3494850021680094 0 N[TA]{I|L}EN 1.9845 - 280 NaN NaN 136831.1 NaN 17923 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22206 89.546 NaN 106970 35 0 8751.8 0.261 -1 WAVCLRSVLI 10 48 608.8477741956584 NaN 0 608.8483276367188 PEAK HCD FTMS 0 0 0 22200 8373.7685546875 0.17944469687216386 1 -0.02950286865234375 6 Carbamidomethyl (C) _WAVC(Carbamidomethyl (C))LRSVLI_ ENST00000581764.1_1_17:61906826-61907063:+|nuORF 1.4819007175156935 0.33891598740166873 2 {M(Oxidation (M))|F} 1 -1 10.485 0 0 0.86244 0 0 627.3478178231543 438.2645357721313 1065.6123535952856 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.86244 - 5 + NaN NaN 112647.6 NaN 17924 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22207 89.549 NaN 151290 35 0 17783 0.261 + 15766 LPFSFPDEL 9 55 532.7680499362499 1063.5215469392997 2 533.269775390625 MULTI HCD FTMS 0 0 0 22200 38003.875 0.5627349647435756 3 -0.08185577392578125 7 Unmodified _LPFSFPDEL_ ENSG00000163719|ENST00000296003|MTMR14 14.838274106304384 0.23215694253501695 2 DPE{I|L} 4 6 24.385 0 0 2.2929 0 0 591.3056860138514 0 591.3056860138514 0 11.668950068207451 0 0 0 0.5 0 0 0 DPE{I|L} 2.2929 - 51 NaN NaN 111487.7 NaN 17925 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22208 89.552 NaN 131510 35 0 11898 0.261 + 12799 KYDVLFALF 9 55 558.3103858889295 1114.606218844659 2 558.3104248046875 MULTI HCD FTMS 0 0 0 22200 23974.30078125 0.007285297622203986 70 -1.75811767578125 8 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 4 5 49.68 0 0 4.4572 0 0 618.3387318341812 0 618.3387318341812 0 35.70107520596089 0 0 0 1.774227503252014 0 0 0 + {M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 4.4572 + + 131 NaN NaN 114905.6 NaN 17926 4280 22200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22210 89.557 NaN 1334700 35 0 61321 0.327 -1 0 125 619.8696707185969 1237.7247885039938 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22209 1096803.5 0.5841456594082974 -19 0.5150070190429688 1 NaN NaN 2 D 1 -1 10.189 0 0 0.82323 0 0 61.0541281763031 1058.5935416085197 1119.6476697848227 0 0 0 0 0 0.3807196863200844 0 0.28872548999643577 0 D 0.82323 - 381 + NaN NaN 283974.1 NaN 17927 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22211 89.562 NaN 634520 35 0 25059 0.261 -1 0 119 641.8826567312225 1281.7507605292449 2 641.882568359375 MULTI HCD FTMS 0 0 0 22209 393338.5625 0.6927515339857807 9 -0.2226104736328125 2 NaN NaN 2 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 9 -1 26.442 0 0 2.063 0 0 131.22791414094723 0 131.22791414094723 0 13.694568895336742 0 0 0 0 0 0.6421590589602533 0 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 2.063 - 428 + NaN NaN 188725.3 NaN 17928 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22212 89.565 NaN 627550 35 0 35051 0.261 -1 0 101 589.3431318065191 1176.671710679838 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22209 369522.1875 0.07374393382802331 57 -1.3880844116210938 3 NaN NaN 2 {M(Oxidation (M))|F}AQ{I|L} 4 -1 22.816 0 0 1.939 0 0 166.1851796589445 548.2141207330686 714.3993003920132 0 0 0 0 0 0 0 0 0.5649093276264391 {M(Oxidation (M))|F}AQ{I|L} 1.939 - 467 + NaN NaN 181967.8 NaN 17929 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22213 89.569 NaN 593150 35 0 135680 0.264 -1 LACCKGTG 8 73 426.1914335144471 850.3683140956942 2 426.1913146972656 MULTI HCD FTMS 0 0 0 22209 185753.328125 0.36392280076924455 6 -0.14405059814453125 4 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LAC(Carbamidomethyl (C))CKGTG_ ENST00000284136.10_1_7:84710854-84710890:-|nuORF 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7174 0 0 685.2893936628802 0 685.2893936628802 0 6.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7174 - 24 + NaN NaN 177002.4 NaN 17930 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22214 89.572 NaN 299550 35 0 46901 0.261 + 16564 LVAASCLEIVL 11 60 565.8266015072564 NaN 0 565.8268432617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LVAASCLEIVL_ ENSG00000142484|ENST00000270560|TM4SF5 18.1463463914782 0.2709046264062343 2 V{I|L}M 3 9 26.198 0 0 2.3191 0 0 131.09440494254028 652.3153170221311 783.4097219646715 0 0 0 0 0 1 0 0 0 V{I|L}M 2.3191 - 28 + NaN NaN 156903.9 NaN 17931 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22215 89.575 NaN 119950 35 0 8610.9 0.261 -1 MNKCILSL 8 46 489.7598344471742 NaN 0 489.75970458984375 PEAK HCD FTMS 0 0 0 22209 48902.8046875 0.7817083591553583 1 -0.029510498046875 6 Carbamidomethyl (C) _MNKC(Carbamidomethyl (C))ILSL_ ENSG00000206530|ENST00000393845|CFAP44 14.838274106304384 0.38780017429789254 2 D[{I|L}P]{I|L}{I|L} 5 -1 13.817 0 0 1.4135 0 0 186.0670290877086 237.08545862369377 423.1524877114024 0 0 0 0 0 1.2134679910804405 0 0 0 D[{I|L}P]{I|L}{I|L} 1.4135 - 18 + NaN NaN 105199.1 NaN 17932 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22216 89.579 NaN 239750 35 0 54878 0.261 + 22763 QYILAVPVL 9 46 508.3129081541187 1014.6112633750374 2 508.312744140625 MULTI HCD FTMS 0 0 0 22209 36420.5703125 0.45334383199343165 -3 0.09522247314453125 7 Unmodified _QYILAVPVL_ ENSG00000164953|ENST00000453321|TMEM67 11.640296217721598 0.25978676193971967 2 V[VP]{I|L} 4 5 23.94 0 0 2.3595 0 0 588.3248158185562 0 588.3248158185562 0 -8.583041560618696 -8.583041560618696 0 0 0.9247425010840047 0 0 0 + V[VP]{I|L} 2.3595 + + 69 NaN NaN 129650.6 NaN 17933 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22217 89.582 NaN 52441 35 0 9235.2 0.261 + -1 CHGCHRAK 8 42 484.7185596845198 967.4225664358396 2 484.71844482421875 MULTI HCD FTMS 0 0 0 22209 27733.94921875 0.6643305887013784 15 -0.389068603515625 8 Carbamidomethyl (C) _CHGC(Carbamidomethyl (C))HRAK_ REV__ENSG00000134545|ENST00000359151|KLRC1;REV__ENSG00000183542|ENST00000309384|KLRC4;REV__ENSG00000205809|ENST00000381902|KLRC2;REV__ENSG00000205810|ENST00000396439|KLRC3;REV__KLRC3|p.E119Q|1|0.16|ENSG00000205810|chr12:10418475-10418475|C/G|missense_variant;REV__nc|ENSG00000205810|Q07444-2|KLRC3 0.7936320650641473 0.540814922690045 2 A 1 -1 0.088644 0 0 0.0091629 0 0 501.4906644356427 391.8806551568969 893.3713195925396 0 0 0 0 0 0 0 0 0 A 0.0091629 + + 5 + NaN NaN 91765.3 NaN 17934 4281 22209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22219 89.587 NaN 1077600 35 0 97909 0.327 + 3683 ELPEQFFQL 9 80 575.7925666818774 1149.5705804305546 2 575.792724609375 MULTI HCD FTMS 0 0 0 22218 5262.26611328125 0.007533947023484411 10 -0.2454681396484375 1 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 76.82478488871298 0.006879825292024087 2 Q{M(Oxidation (M))|F}[CS]{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 8 7 60.341 0 0 5.249 0 0 131.09517173238845 0 131.09517173238845 0 36.396044797224775 0 0 0 0.9247425010840047 0 1.0994850021680094 0.5941876774005248 Q{M(Oxidation (M))|F}[CS]{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 5.249 - 1865 + NaN NaN 250132.5 NaN 17935 4282 22218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22220 89.591 NaN 1161200 35 0 171700 0.261 + 21204 PQPDVFPLF 9 78 530.279025705481 1058.543498477762 2 530.279296875 MULTI HCD FTMS 0 0 0 22218 47311.5625 0.015309287716118034 -8 0.2163848876953125 2 Unmodified _PQPDVFPLF_ ENSG00000275700|ENST00000619387|AATF 36.506200033944 0.08138327636155518 2 V{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 5 4 47.959 0 0 4.5306 0 0 437.18858534980626 0 437.18858534980626 0 5.89726256254238 0 0 0 1.3494850021680094 0 0 0 + V{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 4.5306 + + 1001 NaN NaN 281862.9 NaN 17936 4282 22218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22221 89.595 NaN 129900 35 0 8316.1 0.261 + 28867 TVSMYIKRVF 10 55 622.3475807826734 1242.6806086321467 2 622.3474731445312 MULTI HCD FTMS 0 0 0 22218 20014.5234375 0.06741018952936362 -12 0.33463287353515625 3 Unmodified _TVSMYIKRVF_ ENST00000231368.9_1_5:96365570-96365711:+|nuORF 3.2813086475875832 0.45793521633868084 2 Y 1 9 1.1092 0 0 0.089262 0 0 687.4233587315592 389.17966638736567 1076.603025118925 0 0 0 0 0 0 0 0 0 + Y 0.089262 + + 6 + NaN NaN 108361.8 NaN 17937 4282 22218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22222 89.598 NaN 196700 35 0 12545 0.264 -1 0 61 422.58190287925765 1264.723879237973 3 422.5819091796875 MULTI HCD FTMS 0 0 0 22218 6259.82568359375 0.03307487450243689 -3 0.09186553955078125 4 NaN NaN 2 K 1 -1 6.9897 0 0 0.55267 0 0 806.4505375137268 327.1444185846313 1133.5949560983581 0 0 0 0 0 0.5 0 0 0 K 0.55267 - 1 + NaN NaN 127867.7 NaN 17938 4282 22218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22223 89.601 NaN 154280 35 0 33404 0.261 -1 WFPASSMLL 9 50 555.2702112393592 1108.5258695455184 2 555.270263671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WFPASSM(Oxidation (M))LL_ chr2:142883035-142885349|162|16.54|0.23|6.19|+|2|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|5 7.289230182591677 0.29575926068275815 2 E{I|L}{I|L} 3 -1 24.693 0 0 2.2275 0 0 735.3019886701187 0 735.3019886701187 0 22.474250108400465 0 0 0 0 0 0 0 E{I|L}{I|L} 2.2275 - 9 NaN NaN 111902.3 NaN 17939 4282 22218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22224 89.605 NaN 133300 35 0 14661 0.261 + 4827 EYWPGPNF 8 48 505.22440511597256 1008.4342572987451 2 505.224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _EYWPGPNF_ ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000148408|Q00975-2|CACNA1B 2.577480529830294 0.5381683276125971 2 SN 2 7 15.573 0 0 1.5443 0 0 0 804.3062227838499 804.3062227838499 0.08864383480215565 0 0 0 0 0 0 0 0 SN 1.5443 - 3 + NaN NaN 106224.4 NaN 17940 4282 22218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22226 89.61 NaN 3646300 35 0 405980 0.327 -1 0 102 611.3717896405319 610.3645131739319 1 611.3562622070312 MULTI HCD FTMS 0 0 0 22225 190156.53125 0.4782196235894507 3 -0.07540130615234375 1 NaN NaN 2 V 1 -1 3.0989 0 0 0.50772 0 0 284.17093598982063 224.09760461978752 508.2685406096082 0 0 0 0 0 0 0 0 0 V 0.50772 - 35 + NaN NaN 490731.2 NaN 17941 4283 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22227 89.614 NaN 227390 35 0 32547 0.261 -1 0 74 597.8563626585645 1193.698172383929 2 597.8562622070312 MULTI HCD FTMS 0 0 0 22225 174105.828125 0.061158718026561 59 -1.4503021240234375 2 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.45946 0 0 461.31348107709147 616.2755221002561 1077.5890031773476 0 0 0 0 0 0 0 0 0 {I|L} 0.45946 - 24 + NaN NaN 124953.1 NaN 17942 4283 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22228 89.618 NaN 351930 35 0 46198 0.264 -1 0 73 407.90650160105304 1220.6976754033592 3 407.906494140625 MULTI HCD FTMS 0 0 0 22225 119406.5859375 0.35380718516388143 -14 0.37703704833984375 3 NaN NaN 2 W 1 -1 2.4743 0 0 0.20269 0 0 906.5774838121546 125.02190576724844 1031.5993895794031 0 0 0 0 0 0 0 0 0 W 0.20269 - 20 + NaN NaN 140434.1 NaN 17943 4283 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22229 89.621 NaN 1439600 35 0 222850 0.261 + 8845 HLLHQWGRR 9 79 601.8362068839876 1201.6578608347752 2 601.8363647460938 MULTI HCD FTMS 0 0 0 22225 150616.203125 0.1385620336482766 6 -0.1374053955078125 4 Unmodified _HLLHQWGRR_ REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF 8.593279151180031 0.2858735984551981 2 YDPS{I|L}{I|L}H{I|L}{I|L} 9 -1 49.32 0 0 4.1044 0 0 132.09836575467403 0 132.09836575467403 0 11.370090806403468 0 0 0 0 0 1.3737125054200234 0 YDPS{I|L}{I|L}H{I|L}{I|L} 4.1044 - 1313 + NaN NaN 305686.3 NaN 17944 4283 22225 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22231 89.626 NaN 3192100 35 0 477620 0.327 + 14500 LFAVFQTTF 9 79 537.286881680068 1072.5592104269358 2 537.2871704101562 MULTI HCD FTMS 0 0 0 22230 1316531.875 0.8405829060287457 -1 0.01641082763671875 1 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 174.72732175369546 1.2540765405420886E-09 2 EAV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 8 2 101.27 0 0 9.4416 0 0 131.09376960837955 0 131.09376960837955 0 49.60654430542988 0 0 0 3.4247425010840047 0 1.8851518780601921 0.5796896906561032 EAV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 9.4416 - 1520 + NaN NaN 572585.9 NaN 17945 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22232 89.63 NaN 1045200 35 0 192070 0.261 + 5250 FFDPSLLHLL 10 70 601.3347834774651 NaN 0 601.3348388671875 PEAK HCD FTMS 0 0 0 22230 613723.6875 0.816379214592897 -1 0.01641082763671875 2 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 111.28704002717404 2.070768648899099E-07 2 YDPS{I|L}{I|L}H 7 4 63.937 0 0 5.3252 0 0 131.09581686006192 241.1557558649047 372.25157272496665 0 0 0 0 0 2.56295299324845 0 0.7742275032520141 0 YDPS{I|L}{I|L}H 5.3252 - 397 + NaN NaN 260638.7 NaN 17946 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22233 89.634 NaN 324170 35 0 43619 0.261 + -1 MADEYEIIF 9 57 573.7549813088755 1145.4954096845509 2 573.7550659179688 MULTI HCD FTMS 0 0 0 22230 105986.4609375 0.476012809075041 3 -0.075286865234375 3 Oxidation (M) _M(Oxidation (M))ADEYEIIF_ REV__ENSG00000091129|ENST00000379028|NRCAM;REV__nc|ENSG00000091129|Q92823-2|NRCAM;REV__nc|ENSG00000091129|Q92823-3|NRCAM;REV__nc|ENSG00000091129|Q92823-4|NRCAM;REV__nc|ENSG00000091129|Q92823-5|NRCAM;REV__nc|ENSG00000091129|Q92823-6|NRCAM;REV__NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant 28.486842064014134 0.11819662193267319 2 {I|L}E{I|L}{M(Oxidation (M))|F} 4 -1 53.418 0 0 4.6633 0 0 625.209276267775 0 625.209276267775 0 42.44850021680094 0 0 0 1.6747425010840047 0 0.7742275032520141 0 {I|L}E{I|L}{M(Oxidation (M))|F} 4.6633 - 61 NaN NaN 137329.6 NaN 17947 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22234 89.637 NaN 282850 35 0 92807 0.261 -1 MIMKKHMF 8 63 541.2700165966646 1080.5254802601291 2 541.2705078125 MULTI HCD FTMS 0 0 0 22230 101044.6484375 0.27404806774268325 -6 0.1639862060546875 4 Oxidation (M) _MIM(Oxidation (M))KKHMF_ ENST00000503243.4_1_4:120116571-120116670:-|nuORF 10.183394434864962 0.5188676124868831 2 [QP]EEG 5 -1 20.686 0 0 1.9145 0 0 0 537.2871739459291 537.2871739459291 0.9543872825297939 0 0 0 0 0.5 1.6989700043360187 0 0 [QP]EEG 1.9145 - 28 NaN NaN 134644.5 NaN 17948 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22235 89.641 NaN 289090 35 0 39003 0.261 + 26144 SPMDIFDMF 9 64 567.7280089614021 1133.4414649896041 2 567.7286376953125 MULTI HCD FTMS 0 0 0 22230 102246.9765625 0.4973762323898031 -23 0.6133041381835938 5 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 46.020951573049366 0.037705236580089195 2 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS{I|L} + + 47.423 19.001 3.3977 4.184 4.184 61.165 0 0 0 0 32.81865655543953 0 0 0 1.4247425010840047 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.184 - 92 + NaN NaN 143002.7 NaN 17949 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22236 89.644 NaN 251170 35 0 23364 0.261 + 19876 NYCNLFNYI 9 50 582.2631558525982 1162.5117587719963 2 582.2637939453125 MULTI HCD FTMS 0 0 0 22230 128310.546875 0.9913796225649742 3 -0.075286865234375 6 Unmodified _NYCNLFNYI_ ENSG00000100129|ENST00000652021|EIF3L 100.37149154755038 0.004254194004462789 2 [YN]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{M(Oxidation (M))|F}NY{I|L} 9 0 + 89.9 0 0 7.7332 7.7332 91.618 0 0 0 25.703709116377667 73.70174676113471 25.703709116377667 9.208187539523749 0 1.9247425010840047 1.5228787452803376 0 1.6549471895720984 + + [YN]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{M(Oxidation (M))|F}NY{I|L};[YN]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{M(Oxidation (M))|F}GGY{I|L};[YN]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}{M(Oxidation (M))|F}{I|L}[YN] 7.7332;6.9411;4.8727 +;-;- + 176 NaN NaN 135967.6 NaN 17950 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22237 89.647 NaN 56585 35 0 10433 0.262 -1 0 33 467.1020168739247 NaN 0 467.1017761230469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 V 1 -1 0.088644 0 0 0.0095092 0 0 483.04419990820253 347.0447176568969 830.0889175650995 0 0 0 0 0 0 0 0 0 V 0.0095092 - 1 + NaN NaN 110763.8 NaN 17951 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22238 89.651 NaN 90797 35 0 6134.9 0.261 + 6801 FPSCAPRCL 9 46 497.2366404234152 NaN 0 497.23748779296875 PEAK HCD FTMS 0 0 0 22230 9011.125 0.3851799311205484 3 -0.075286865234375 8 Unmodified _FPSCAPRCL_ ENST00000520791.5_1_8:99956895-99957015:+|nuORF 8.593279151180031 0.2536050107310812 2 S 1 8 3.0989 0 0 0.31225 0 0 661.3067636575743 241.09795557193596 902.4047192295102 0 0 0 0 0 0 0 0 0 + S 0.31225 + + 9 + NaN NaN 109823.5 NaN 17952 4284 22230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22240 89.655 NaN 702090 35 0 76138 0.327 + 10031 IFAVKMNEQ 9 76 548.2782620883543 1094.5419712435084 2 548.2782592773438 MULTI HCD FTMS 0 0 0 22239 165090.640625 0.8878467738858893 1 -0.02950286865234375 1 Oxidation (M) _IFAVKM(Oxidation (M))NEQ_ REV__ENSG00000181273|ENST00000326855|OR5AK2 62.57269311338072 0.013982455292112035 2 {I|L}{M(Oxidation (M))|F}AVWDPT{M(Oxidation (M))|F} 9 -1 + 76.865 0 0 7.0226 7.0226 91.661 0 0 0 30.228787452803374 12.245710852238872 12.245710852238872 11.748650278674049 0 2.4247425010840047 0 0.3054621874040891 0 {I|L}{M(Oxidation (M))|F}AVWDPT{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}AVW[EP]S{M(Oxidation (M))|F};{I|L}[{M(Oxidation (M))|F}E]Q{M(Oxidation (M))|F}VA{[QN]|[E{I|L}]|[KN]};{I|L}{M(Oxidation (M))|F}AV[PA]E[WY];{I|L}[{M(Oxidation (M))|F}E][AG]{M(Oxidation (M))|F}VA{[QN]|[E{I|L}]|[KN]};{I|L}[{M(Oxidation (M))|F}E]Q{M(Oxidation (M))|F}{I|L}G{[QN]|[E{I|L}]|[KN]};{I|L}[{M(Oxidation (M))|F}E][AG]{M(Oxidation (M))|F}{I|L}G{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{[QG]|[NA]}D[KA]{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}A[{I|L}A][DP][WY];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{[QG]|[NA]}D[KA]{M(Oxidation (M))|F} 7.0226;5.9492;5.116;4.9261;4.2747;4.1091;3.2678;3.2644;2.5953;2.2575 -;-;-;-;-;-;-;-;-;- 829 + NaN NaN 202469.6 NaN 17953 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22241 89.66 NaN 396350 35 0 120790 0.263 + 1634 CAFAFSAP 8 59 407.18359316607916 812.3526333989583 2 407.1834716796875 MULTI HCD FTMS 0 0 0 22239 222841.5 1 0 0 2 Unmodified _CAFAFSAP_ ENSG00000142327|ENST00000270357|RNPEPL1 0.7936320650641473 0.540814922690045 2 {I|L} 1 8 14.292 0 0 1.7593 0 0 544.1740578147771 152.07167993717033 696.2457377519474 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L} 1.7593 - 16 + NaN NaN 159721.8 NaN 17954 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22242 89.663 NaN 194650 35 0 51027 0.261 + 31144 VTVPVEILS 9 41 478.78562151437774 955.5566900955555 2 478.7685852050781 MULTI HCD FTMS 0 0 0 22239 15949.2099609375 0.4289848225653496 5 -0.124359130859375 3 Unmodified _VTVPVEILS_ ENSG00000164715|ENST00000297293|LMTK2 10.823927491677226 0.26684000660059787 2 {I|L}{I|L}{[TV]|[{I|L}S]} 4 6 18.94 0 0 1.9821 0 0 511.2631553817622 0 511.2631553817622 0 2.742275032520137 0 0 0 0 0 0.4247425010840047 0 {I|L}{I|L}{[TV]|[{I|L}S]} 1.9821 - 39 + NaN NaN 117891.8 NaN 17955 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22243 89.667 NaN 529040 35 0 64258 0.261 + 2250 DLFSVEDEYAT 11 66 644.7830642072604 1287.5515754813207 2 644.7823486328125 MULTI HCD FTMS 0 0 0 22239 202486.515625 0.7829643287663817 -2 0.0458984375 4 Unmodified _DLFSVEDEYAT_ REV__ENSG00000171119|ENST00000303212|NRTN 12.240655878213236 0.35042917576941135 2 [YG]{I|L}D{I|L}E{I|L}{I|L} 8 -1 89.914 0 0 6.9834 0 0 0 368.0301881124332 368.0301881124332 78.2319095436452 0 0 0 0 2.8494850021680094 1.6989700043360187 1.566901560044258 0 [YG]{I|L}D{I|L}E{I|L}{I|L} 6.9834 - 330 NaN NaN 168676.4 NaN 17956 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22244 89.67 NaN 662310 35 0 87867 0.261 + 32290 VYTVVDEMFL 10 54 608.3025575845322 1214.5905622358644 2 608.3026123046875 MULTI HCD FTMS 0 0 0 22239 188043.25 0.16537740800194187 -6 0.16060638427734375 5 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 144.35026110057638 3.418863920185984E-07 2 [YV]TVVDEM{M(Oxidation (M))|F}{I|L} 10 0 + 104.02 0 0 8.5643 8.5643 96.761 0 0 0 4.259687322722812 79.07312836760731 4.259687322722812 33.596981436199016 0 2.8494850021680094 0 2.341129063296272 0 + + [YV]TVVDEM{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}EDVV[MT]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}DVVTM{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}M{M(Oxidation (M))|F}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}{[VA]|[{I|L}G]}M{M(Oxidation (M))|F}{I|L} 8.5643;5.7982;4.5385;3.0871;3.0074 +;-;-;-;- + 306 NaN NaN 197093.2 NaN 17957 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22245 89.673 NaN 166980 35 0 19570 0.261 + 13671 KYPENFFLL 9 61 585.8136157652201 NaN 0 585.8134155273438 PEAK HCD FTMS 0 0 0 22239 90022.4375 0.6864635836644755 78 -1.9834442138671875 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 8 15.969 0 0 1.3653 0 0 131.09563396067648 775.3386434493136 906.43427740999 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.3653 - 20 + NaN NaN 133467.5 NaN 17958 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22246 89.677 NaN 189580 35 0 32331 0.261 -1 YLCHLCFN 8 51 563.7426589161947 1125.4707648991894 2 563.7429809570312 MULTI HCD FTMS 0 0 0 22239 24176.515625 0.42173238366818894 1 -0.02950286865234375 7 2 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))HLC(Carbamidomethyl (C))FN_ ENSG00000165424|ENST00000372336|ZCCHC24;ENST00000372333.3_1_10:81146103-81203947:-|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}N 2 -1 14.464 0 0 1.2851 0 0 880.3329334943375 0 880.3329334943375 0 1.365006360318688 0 0 0 0 0 0 0 {I|L}N 1.2851 - 8 NaN NaN 114677.3 NaN 17959 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22247 89.68 NaN 107670 35 0 8015.4 0.261 + 459 ALPEFTSIF 9 36 512.7711940486455 1023.527835164091 2 513.272705078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ALPEFTSIF_ ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;PIBF1-KLF5|1|fusion 14.838274106304384 0.23215694253501695 2 MVQ{I|L} 4 8 31.938 0 0 3.1204 0 0 0 549.2678711744843 549.2678711744843 5.383643918355361 0 0 0 0 0 0 0 0 MVQ{I|L} 3.1204 - 43 + NaN NaN 119850.7 NaN 17960 4285 22239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22249 89.685 NaN 587690 35 0 27889 0.327 -1 0 96 633.3694187770183 1264.7242846208364 2 633.369384765625 MULTI HCD FTMS 0 0 0 22248 798031.8125 0.6188981608968315 6 -0.14722442626953125 1 NaN NaN 2 {[HG]|PP}N 3 -1 10.176 0 0 0.80461 0 0 0 953.5180494075122 953.5180494075122 -0.6651564221917976 0 -0.6651564221917976 0 0 0.5994850021680094 0 0 0 {[HG]|PP}N 0.80461 - 174 + NaN NaN 191968.2 NaN 17961 4286 22248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22250 89.689 NaN 660500 35 0 74743 0.262 + -1 IFAVKMNEQ 9 90 548.2782620883543 1094.5419712435084 2 549.2991943359375 MULTI HCD FTMS 0 0 0 22248 6853.52587890625 0.17596984867217433 2 -0.0424957275390625 2 Oxidation (M) _IFAVKM(Oxidation (M))NEQ_ REV__ENSG00000181273|ENST00000326855|OR5AK2 39.94969957227396 0.06557568441294001 2 E{I|L}N{I|L}K{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F} 9 -1 + 56.664 0 0 5.177 5.177 87.205 0 0 0 18.313870437344157 6.030768805449185 6.030768805449185 9.208187539523749 0 0 0 1.3193415193665468 0.7887254899964358 E{I|L}N{I|L}K{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F};E{I|L}GG{I|L}K{[QC]|[C(Carbamidomethyl (C))A]}T{M(Oxidation (M))|F};E{I|L}N[Q{I|L}][KC]T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[YT]{[CA]|SS}VA{I|L}Q;{[QV]|[N{I|L}]|[RA]|[KV]}[YT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}A{I|L}Q;[YT]N{I|L}{[CA]|SS}VA{I|L}Q;[KA][YE]{[CA]|SS}VA{I|L}Q;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV[C(Carbamidomethyl (C))K][QT]E;{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A[QA]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}Q;[YT]N{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}A{I|L}Q 5.177;4.3357;3.3713;2.9665;2.6447;1.416;1.403;1.2354;1.2278;1.0943 -;-;-;-;-;-;-;-;-;- 1104 + NaN NaN 203195.6 NaN 17962 4286 22248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22251 89.693 NaN 144000 35 0 40552 0.261 + 32854 WWLCPRVPMS 10 47 637.8119251751956 1273.609297417191 2 637.8119506835938 MULTI HCD FTMS 0 0 0 22248 46983.15625 0.44907962797559375 6 -0.14722442626953125 3 Unmodified _WWLCPRVPMS_ ENST00000493195.5_1_1:159900586-159902547:-|nuORF 1.6526216038709556 0.46655611578153744 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116710.8 NaN 17963 4286 22248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22252 89.696 NaN 139060 35 0 14780 0.264 + 20923 PLAAPRYR 8 50 472.2754174714126 NaN 0 472.2877197265625 PEAK HCD FTMS 0 0 0 22248 4814.15673828125 0.2582296247949227 2 -0.0424957275390625 4 Unmodified _PLAAPRYR_ REV__nc|ENSG00000158850|O60512-2|B4GALT3 2.8892196856762586 0.38822285293237185 2 P 1 -1 3.0989 0 0 0.32879 0 0 396.20975720669395 446.24521814517817 842.4549753518721 0 0 0 0 0 0 0 0 0 P 0.32879 + + 6 + NaN NaN 125719.9 NaN 17964 4286 22248 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22254 89.701 NaN 1412000 35 0 72508 0.327 -1 0 128 619.8696707185969 1237.7247885039938 2 619.8693237304688 MULTI HCD FTMS 0 0 0 22253 1398229.375 0.7446818142569992 -13 0.33092498779296875 1 NaN NaN 2 NA[RV]ATK{M(Oxidation (M))|F} 8 -1 10.765 0 0 0.86974 0 0 79.06067686040736 268.12351404361567 347.184190904023 0 0 0 0 0 0.5387254899964358 0 0.6307196863200843 0.8494850021680094 NA[RV]ATK{M(Oxidation (M))|F} 0.86974 - 405 + NaN NaN 320929.2 NaN 17965 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22255 89.706 NaN 649130 35 0 35862 0.261 -1 0 101 589.3431318065191 1176.671710679838 2 589.34326171875 MULTI HCD FTMS 0 0 0 22253 368794.53125 0.07359871863888247 63 -1.584564208984375 2 NaN NaN 2 {I|L}{I|L}{I|L}QA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 29.786 0 0 2.5314 0 0 326.187473779753 0 326.187473779753 0 10.617063521379958 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}{I|L}QA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5314 - 860 + NaN NaN 200593.6 NaN 17966 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22256 89.709 NaN 475200 35 0 16553 0.261 -1 0 110 641.8826567312225 1281.7507605292449 2 641.8822021484375 MULTI HCD FTMS 0 0 0 22253 274276.125 0.4830576618823783 15 -0.38944244384765625 3 NaN NaN 2 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 9 -1 22.916 0 0 1.7879 0 0 131.2304436736975 0 131.2304436736975 0 11.23380636665303 0 0 0 0 0 0.5114393726401688 0 {I|L}E{I|L}CW{M(Oxidation (M))|F}D{I|L}{I|L} 1.7879 - 316 + NaN NaN 161008.6 NaN 17967 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22257 89.713 NaN 176230 35 0 19445 0.264 + 8806 HIPPPRLN 8 57 472.2754174714126 NaN 0 472.28753662109375 PEAK HCD FTMS 0 0 0 22253 14963.8876953125 0.8026575192924597 3 -0.07855987548828125 4 Unmodified _HIPPPRLN_ L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|55|2|sense 2.577480529830294 0.38822285293237185 2 P 1 7 0.71334 0 0 0.075683 0 0 700.3925727584518 142.0635164850219 842.4560892434737 0 0 0 0 0 0 0 0 0 + P 0.075683 + + 2 + NaN NaN 114203.5 NaN 17968 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22258 89.716 NaN 104830 35 0 10019 0.261 + 28871 TVTEFMPIL 9 41 525.7806532270043 NaN 0 525.7803344726562 PEAK HCD FTMS 0 0 0 22253 33967.08203125 0.757053871085051 3 -0.07855987548828125 5 Unmodified _TVTEFMPIL_ REV__ENSG00000160191|ENST00000291539|PDE9A;REV__ENST00000470987.5_1_21:44117526-44195400:+|nuORF;REV__ENST00000489319.5_1_21:44178904-44195400:+|nuORF;REV__nc|ENSG00000160191|O76083-10|PDE9A;REV__nc|ENSG00000160191|O76083-11|PDE9A;REV__nc|ENSG00000160191|O76083-12|PDE9A;REV__nc|ENSG00000160191|O76083-13|PDE9A;REV__nc|ENSG00000160191|O76083-14|PDE9A;REV__nc|ENSG00000160191|O76083-15|PDE9A;REV__nc|ENSG00000160191|O76083-16|PDE9A;REV__nc|ENSG00000160191|O76083-2|PDE9A;REV__nc|ENSG00000160191|O76083-3|PDE9A;REV__nc|ENSG00000160191|O76083-4|PDE9A;REV__nc|ENSG00000160191|O76083-5|PDE9A;REV__nc|ENSG00000160191|O76083-6|PDE9A;REV__nc|ENSG00000160191|O76083-7|PDE9A;REV__nc|ENSG00000160191|O76083-8|PDE9A;REV__nc|ENSG00000160191|O76083-9|PDE9A 10.823927491677226 0.2427956001690155 2 {I|L} 1 -1 11.99 0 0 1.1424 0 0 131.0938677561166 802.3451940574288 933.4390618135453 0 0 0 0 0 0.5 0 0 0 {I|L} 1.1424 + + 2 + NaN NaN 101574.3 NaN 17969 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22259 89.719 NaN 173250 35 0 25348 0.261 + 20862 PIGVEGIQVL 10 47 512.8054365993609 1023.5963202655217 2 512.8049926757812 MULTI HCD FTMS 0 0 0 22253 56326.4921875 0.3311257794541015 -4 0.09169769287109375 6 Unmodified _PIGVEGIQVL_ ENSG00000174498|ENST00000327987|IGDCC3 20.41453444215458 0.3201613495159799 2 {I|L}QV{I|L} 4 6 50.745 0 0 4.9576 0 0 552.2904099109206 0 552.2904099109206 0 33.75569708000178 0 0 0 1.5 0 0 0.3807196863200844 + {I|L}QV{I|L} 4.9576 + + 24 NaN NaN 116180.2 NaN 17970 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22260 89.723 NaN 28553 35 0 2454.5 0.261 + 9522 HQQNQNRVW 9 25 605.2947998046875 NaN 0 605.2947998046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _HQQNQNRVW_ ENSG00000104081|ENST00000354670|BMF;nc|ENSG00000104081|Q96LC9-2|BMF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102598.2 NaN 17971 4287 22253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22262 89.727 NaN 4670000 35 0 822140 0.327 + 21205 PQPDVFPLF 9 103 530.279025705481 1058.543498477762 2 530.2793579101562 MULTI HCD FTMS 0 0 0 22261 2086335.625 0.6751058444859424 -2 0.0424957275390625 1 Unmodified _PQPDVFPLF_ ENSG00000275700|ENST00000619387|AATF 69.10491478415734 0.009377850133389008 2 [QP]DPV{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F} 9 2 + 67.541 0 0 6.3805 6.3805 88.228 0 0 0 9.035984316004217 10.3079628879413 9.035984316004217 9.035984316004217 0 2.701163485412895 0 0.9436726795685343 0 [QP]DPV{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[DP]QPV{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[DP]V[QP]{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[{I|L}P]YYQ[KT]{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[RH]{M(Oxidation (M))|F};RR{M(Oxidation (M))|F}[HS]P{I|L}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TVR[RH]{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}V{NN|[MP]|[D{I|L}]|[EV]} 6.3805;5.5269;5.2;3.5186;2.833;2.5922;1.2978;1.2375 -;-;-;-;-;-;-;- 2181 NaN NaN 792315.8 NaN 17972 4288 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22263 89.732 NaN 617490 35 0 72823 0.261 + 3684 ELPEQFFQL 9 77 575.7925666818774 1149.5705804305546 2 575.79248046875 MULTI HCD FTMS 0 0 0 22261 139671.46875 0.1999665968239333 16 -0.395721435546875 2 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 59.368380827593164 0.01846506874148156 2 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 59.587 0 0 5.1834 5.1834 87.211 0 0 0 9.326440444176214 27.86098023303616 9.326440444176214 9.208187539523749 0 2.2614393726401687 0 1.110924374808178 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[DP]AA{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[EP]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};[DP]AA{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L};{[RE]|[WV]}{[ES]|[DT]|[{I|L}C]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}Q{I|L} 5.1834;4.3824;4.3824;3.5929;2.9427;2.514;2.4695 +;-;-;-;-;-;- + 642 NaN NaN 192921.4 NaN 17973 4288 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22264 89.735 NaN 204020 35 0 52414 0.261 + 14288 LDALPLDLL 9 42 491.7941078567474 981.5736627802949 2 491.79473876953125 MULTI HCD FTMS 0 0 0 22261 49623.76171875 0.45107090113886883 1 -0.01950836181640625 3 Unmodified _LDALPLDLL_ ENSG00000102854|ENST00000545450|MSLN;MSLN|p.Y234Tfs*78|2|0.35|ENSG00000102854|chr16:765293-765293|C/-|frameshift_variant;nc|ENSG00000102854|Q13421-2|MSLN;nc|ENSG00000102854|Q13421-4|MSLN;nc|ENSG00000102854|Q13421|MSLN 37.97399986684836 0.07464525285885698 2 {NN|[MP]|[D{I|L}]|[EV]}P[{I|L}A]{I|L}D{I|L}{I|L} 9 2 + 64.939 0 0 6.6158 6.6158 91.971 0 0 0 16.020599913279625 16.478174818886373 16.020599913279625 16.020599913279625 0 1.305462187404089 1.3010299956639813 0 0 {NN|[MP]|[D{I|L}]|[EV]}P[{I|L}A]{I|L}D{I|L}{I|L};[DP]{I|L}[{I|L}A]{I|L}D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}[PA]D{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}[WP]{I|L}{I|L} 6.6158;4.9837;4.2728;3.1035 -;-;-;- 66 NaN NaN 126856.9 NaN 17974 4288 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22265 89.739 NaN 166900 35 0 35940 0.261 + 22764 QYILAVPVL 9 47 508.3129081541187 1014.6112633750374 2 508.3127136230469 MULTI HCD FTMS 0 0 0 22261 55625.4609375 0.6923960663282707 3 -0.07192230224609375 4 Unmodified _QYILAVPVL_ ENSG00000164953|ENST00000453321|TMEM67 11.640296217721598 0.25978676193971967 2 V[VP]{I|L} 4 5 18.416 0 0 1.8151 0 0 588.3259144513687 0 588.3259144513687 0 3.8122813092856234 0 0 0 0.8494850021680094 0 0 0 + V[VP]{I|L} 1.8151 + + 15 NaN NaN 108786.9 NaN 17975 4288 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22266 89.742 NaN 196900 35 0 18016 0.261 + 12800 KYDVLFALF 9 66 558.3104695184896 1114.6063861037792 2 558.3104858398438 MULTI HCD FTMS 0 0 0 22261 7176.35546875 0.15617425952588881 -3 0.07199859619140625 5 Unmodified _KYDVLFALF_ ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 4 5 45.79 0 0 4.1082 0 0 618.3376332013687 0 618.3376332013687 0 41.18562527100117 0 0 0 1.6861818737241734 0 0 0 + {M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F} 4.1082 + + 134 NaN NaN 140199.5 NaN 17976 4288 22261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22268 89.747 NaN 4546400 35 0 692100 0.327 -1 0 101 611.3717896405319 610.3645131739319 1 611.356689453125 MULTI HCD FTMS 0 0 0 22267 195617.046875 0.49195212969705676 9 -0.25127410888671875 1 NaN NaN 2 V 1 -1 3.0989 0 0 0.50772 0 0 284.1708146138859 224.09748254947502 508.2682971633609 0 0 0 0 0 0 0 0 0 V 0.50772 - 13 + NaN NaN 617242.9 NaN 17977 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22269 89.751 NaN 408290 35 0 23909 0.261 + -1 PLEPLLRCFV 10 83 622.3475807826734 1242.6806086321467 2 622.3471069335938 MULTI HCD FTMS 0 0 0 22267 222945.875 0.7508959049397707 -5 0.12099456787109375 2 Carbamidomethyl (C) _PLEPLLRC(Carbamidomethyl (C))FV_ REV__ENST00000395841.6_1_20:55953421-55953598:+|nuORF 6.2057823575117 0.44245551207394906 2 [YN]{I|L}R 4 -1 16.375 0 0 1.3177 0 0 0 693.3631462603321 693.3631462603321 10.300332726279766 0 0 0 0 0 1.2218487496163564 0 0 [YN]{I|L}R 1.3177 - 127 NaN NaN 151264 NaN 17978 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22270 89.755 NaN 750190 35 0 63919 0.261 + 3685 ELPEQFFQL 9 83 575.7925666818774 1149.5705804305546 2 576.2737426757812 MULTI HCD FTMS 0 0 0 22267 61659.15625 0.1354311101690791 17 -0.42488861083984375 3 Unmodified _ELPEQFFQL_ ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 59.368380827593164 0.01846506874148156 2 {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 61.99 0 0 5.3925 5.3925 87.51 0 0 0 4.232712163289278 27.253633307962204 4.232712163289278 9.208187539523749 0 2.1549471895720984 0 1.110924374808178 0 + + {[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP][AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[QN]|[E{I|L}]|[KN]}[EP]Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]VV[DG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};[EP]Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};[EP][AG]{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 5.3925;4.5915;4.5915;4.3285;4.0317;3.5275;3.5275 +;-;-;-;-;-;- + 1139 NaN NaN 201647.7 NaN 17979 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22271 89.758 NaN 725280 35 0 87972 0.261 + 33753 YLEYGSHED 9 89 556.7302614603334 1111.4459699874667 2 556.7322387695312 MULTI HCD FTMS 0 0 0 22267 231264.140625 0.06039258278843513 -7 0.160247802734375 4 Unmodified _YLEYGSHED_ CASK|p.M815L|1|0.14|ENSG00000147044|chrX:41531084-41531084|T/G|missense_variant;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-5|CASK;nc|ENSG00000147044|O14936-6|CASK 16.942295170755138 0.21397866736869717 2 Y{I|L}V{M(Oxidation (M))|F}[C(Carbamidomethyl (C))M]E 7 6 56.801 0 0 5.1106 0 0 0 166.02971826724846 166.02971826724846 37.337513372786475 0 0 0 0 1.2059771852360797 1.2218487496163564 0.3807196863200844 0 Y{I|L}V{M(Oxidation (M))|F}[C(Carbamidomethyl (C))M]E 5.1106 - 306 + NaN NaN 199319.3 NaN 17980 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22272 89.762 NaN 283050 35 0 44941 0.261 -1 0 74 597.8563626585645 1193.698172383929 2 597.8565673828125 MULTI HCD FTMS 0 0 0 22267 120019.6328125 0.04215968505983105 65 -1.6437530517578125 5 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.45946 0 0 461.31384728802897 616.2772921197874 1077.5911394078164 0 0 0 0 0 0 0 0 0 {I|L} 0.45946 - 22 + NaN NaN 128657 NaN 17981 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22273 89.765 NaN 218240 35 0 11741 0.264 -1 0 73 422.58190287925765 1264.723879237973 3 422.5817565917969 MULTI HCD FTMS 0 0 0 22267 102963.1875 0.5440238557854367 4 -0.1081085205078125 6 NaN NaN 2 Q 1 -1 12.764 0 0 1.0092 0 0 1118.6555636635574 0 1118.6555636635574 0 8.160116073527028 0 0 0 0 0 0 0 Q 1.0092 - 23 + NaN NaN 117572.1 NaN 17982 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22274 89.768 NaN 335340 35 0 33072 0.261 + 28258 TLLSKRRS 8 65 480.8012458812737 959.5879388293474 2 480.80126953125 MULTI HCD FTMS 0 0 0 22267 170488.015625 0.13668757127996264 -5 0.12099456787109375 7 Unmodified _TLLSKRRS_ ENST00000490962.1_1_3:72926935-72927124:-|nuORF 4.75600775471527 0.5349361699807423 2 A 1 8 8.2268 0 0 0.85733 0 0 105.08119219123007 780.4611414444238 885.5423336356539 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.85733 - 16 + NaN NaN 142990.1 NaN 17983 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22275 89.772 NaN 243990 35 0 67404 0.261 + 10377 IMIVYFLF 8 47 523.2938879671703 1044.5732230011406 2 523.28173828125 MULTI HCD FTMS 0 0 0 22267 22054.68359375 0.7119306342885702 2 -0.0524139404296875 8 Unmodified _IMIVYFLF_ CCR2|p.T247I|1|0.3|ENSG00000121807|chr3:46358267-46358267|C/T|missense_variant;ENSG00000121807|ENST00000445132|CCR2;ENSG00000160791|ENST00000292303|CCR5;nc|ENSG00000121807|P41597|CCR2 17.086550045450526 0.4680768486079041 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}{I|L} 8 2 + 41.604 0 0 3.9829 3.9829 88.729 0 0 0 12.887955392469692 12.307131330965717 12.307131330965717 23.01029995663981 0 0 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}{I|L};[{I|L}P]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YV]{M(Oxidation (M))|F}{I|L};[{I|L}P]QQ[KG]D{M(Oxidation (M))|F}{I|L} 3.9829;1.78;1.3501 -;-;- 99 NaN NaN 119089.6 NaN 17984 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22276 89.775 NaN 200540 35 0 32059 0.261 + 3347 EENDYINSYF 10 53 647.2693037027751 1292.5240544723501 2 647.27001953125 MULTI HCD FTMS 0 0 0 22267 43621.484375 0.7928226163494221 -3 0.06200408935546875 9 Unmodified _EENDYINSYF_ ENSG00000113356|ENST00000651687|POLR3G 4.897010918128616 0.4493830473644964 2 Y{M(Oxidation (M))|F} 2 8 25.217 0 0 1.951 0 0 964.3806019513687 0 964.3806019513687 0 21.237125054200234 0 0 0 0.4247425010840047 0 0 0 + Y{M(Oxidation (M))|F} 1.951 + + 16 NaN NaN 120785.5 NaN 17985 4289 22267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22278 89.78 NaN 1075300 35 0 140800 0.327 + 14501 LFAVFQTTF 9 89 537.286881680068 1072.5592104269358 2 537.286865234375 MULTI HCD FTMS 0 0 0 22277 463627.59375 0.2960182259692647 5 -0.1270904541015625 1 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 144.35026110057638 1.4798765981150827E-05 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F} 9 0 + 87.106 0 0 8.1213 8.1213 90.828 0 0 0 4.762036441594191 35.24227503252014 4.762036441594191 7.92719286378599 0 2.7302046884880937 0 0.7742275032520141 0.6989700043360187 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{M(Oxidation (M))|F}QTT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}AV{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}G{I|L}{M(Oxidation (M))|F}[AG]TT{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};[YE][KG]{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};[DP]V[PS][W{I|L}]{I|L}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}VA{M(Oxidation (M))|F}{I|L};{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}VA{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{M(Oxidation (M))|F}T]{[QS]|[NT]}A{I|L}{M(Oxidation (M))|F} 8.1213;7.3822;6.6111;5.872;4.613;3.1028;2.9873;2.9801;2.9108;2.536 +;-;-;-;-;-;-;-;-;- + 1090 NaN NaN 258446.8 NaN 17986 4290 22277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22279 89.784 NaN 717120 35 0 211030 0.261 + 21227 PQVGYKENF 9 83 541.2700165966646 1080.5254802601291 2 541.2701416015625 MULTI HCD FTMS 0 0 0 22277 368711.40625 1 0 0 2 Unmodified _PQVGYKENF_ REV__ENST00000474610.1_1_2:33952107-33952842:-|nuORF 29.081581746732265 0.1154664336125038 2 PQ[DP]V{M(Oxidation (M))|F} 6 -1 50.896 0 0 4.7103 0 0 0 394.17670618228755 394.17670618228755 35.22160958700539 0 0 0 0 1.2302046884880937 1.6989700043360187 0.3494850021680094 0.3494850021680094 PQ[DP]V{M(Oxidation (M))|F} 4.7103 - 228 + NaN NaN 203313.9 NaN 17987 4290 22277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22280 89.788 NaN 307400 35 0 53503 0.261 + 5251 FFDPSLLHLL 10 53 601.3347834774651 NaN 0 601.3348388671875 PEAK HCD FTMS 0 0 0 22277 80156.1015625 0.10662416421465276 5 -0.1270904541015625 3 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 62.57269311338072 0.04399116362967149 2 YDP{[TV]|[{I|L}S]}{I|L}C 7 5 37.211 0 0 3.0992 0 0 131.08945280439212 275.2008150690063 406.2902678733984 0 0 0 0 0 1.8494850021680094 0 0.3494850021680094 0 YDP{[TV]|[{I|L}S]}{I|L}C 3.0992 - 43 + NaN NaN 141475.5 NaN 17988 4290 22277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22281 89.791 NaN 340440 35 0 23304 0.264 -1 0 77 407.90650160105304 1220.6976754033592 3 407.90655517578125 MULTI HCD FTMS 0 0 0 22277 220104.609375 0.6521800424419275 -7 0.170257568359375 4 NaN NaN 2 S[{M(Oxidation (M))|F}V] 3 -1 8.5565 0 0 0.70095 0 0 869.4926624982437 0 869.4926624982437 0 2.715299873086609 0 0 0 0 0 0.3494850021680094 0 S[{M(Oxidation (M))|F}V] 0.70095 - 18 NaN NaN 148932.7 NaN 17989 4290 22277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22282 89.794 NaN 171810 35 0 66876 0.261 + 1822 CRRQVCLEL 9 48 560.2921219532 NaN 0 560.2919921875 PEAK HCD FTMS 0 0 0 22277 33945.83203125 0.2734990466705604 -4 0.09485626220703125 5 Unmodified _CRRQVCLEL_ REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF 13.90604991867851 0.22786006501039813 2 E{I|L} 2 -1 18.271 0 0 1.6334 0 0 131.0922985431559 742.3267119577371 873.4190105008929 0 0 0 0 0 0.7302046884880937 0 0 0 E{I|L} 1.6334 + + 10 + NaN NaN 117637.9 NaN 17990 4290 22277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22284 89.799 NaN 1612000 35 0 219620 0.327 + 32291 VYTVVDEMFL 10 69 608.3025575845322 1214.5905622358644 2 608.3029174804688 MULTI HCD FTMS 0 0 0 22283 1137055.25 1 0 0 1 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 214.13773924641143 6.677275740084004E-25 2 [YV]TVVDEM{M(Oxidation (M))|F}{I|L} 10 0 + 122.39 0 0 10.077 10.077 96.225 0 0 0 17.269987279362624 88.87176837010102 17.269987279362624 14.330984399557423 0 3.2302046884880937 1.3010299956639813 2.7971062485323515 0 + + [YV]TVVDEM{M(Oxidation (M))|F}{I|L};[YV]TVVDE{M(Oxidation (M))|F}M{I|L};[YT]VVVDEM{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}EDVVTM{I|L};[YT]VVVDE{M(Oxidation (M))|F}M{I|L};{[YD]|[{M(Oxidation (M))|F}M]}E[{M(Oxidation (M))|F}V]VVTM{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M{M(Oxidation (M))|F}{I|L}VAM{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F}M{I|L};{[YD]|[{M(Oxidation (M))|F}M]}E{I|L}[VS]VM{M(Oxidation (M))|F}{I|L};[YV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[HS]R{M(Oxidation (M))|F}{I|L} 10.077;8.8966;8.4441;8.3679;7.8654;5.2337;4.8456;4.2669;3.9157;3.9061 +;-;-;-;-;-;-;-;-;- + 1263 NaN NaN 351846 NaN 17991 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22285 89.804 NaN 1133300 35 0 177150 0.261 + -1 NSNSTMTNDL 10 98 556.7302614603334 1111.4459699874667 2 556.730712890625 MULTI HCD FTMS 0 0 0 22283 717075.5 0.18725791807701928 -5 0.11441802978515625 2 Oxidation (M) _NSNSTM(Oxidation (M))TNDL_ REV__ENSG00000135905|ENST00000258390|DOCK10;REV__nc|ENSG00000135905|Q96BY6-3|DOCK10 23.789781309258295 0.28859042913526417 2 Y{I|L}V{M(Oxidation (M))|F}C(Carbamidomethyl (C))ME 7 -1 54.351 0 0 4.8901 0 0 0 166.02979456119377 166.02979456119377 30.946508924226478 0 0 0 0 1.5941876774005248 1.3979400086720375 0.3494850021680094 0 Y{I|L}V{M(Oxidation (M))|F}C(Carbamidomethyl (C))ME 4.8901 - 591 + NaN NaN 265072.5 NaN 17992 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22286 89.807 NaN 520320 35 0 62925 0.261 + 2251 DLFSVEDEYAT 11 74 644.7830642072604 1287.5515754813207 2 644.783203125 MULTI HCD FTMS 0 0 0 22283 187765.796875 0.7260430190215 4 -0.1075286865234375 3 Unmodified _DLFSVEDEYAT_ REV__ENSG00000171119|ENST00000303212|NRTN 17.11289562659939 0.30797719109864646 2 [YG]{I|L}D{I|L}E{I|L}PD 9 -1 85.341 0 0 6.6282 0 0 0 269.0450533502563 269.0450533502563 79.76789385964942 0 0 0 0 2.6747425010840047 2 0.3494850021680094 0 [YG]{I|L}D{I|L}E{I|L}PD 6.6282 - 107 + NaN NaN 169320.4 NaN 17993 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22287 89.811 NaN 448490 35 0 51524 0.261 -1 SPMDIFDMF 9 82 567.7280089614021 1133.4414649896041 2 567.728515625 MULTI HCD FTMS 0 0 0 22283 133408.59375 0.6489606437138685 -16 0.40279388427734375 4 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 37.97399986684836 0.07464525285885698 2 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 -1 {[{M(Oxidation (M))|F}D]|MM}PS + + 55.745 14.693 3.2932 4.9182 4.9182 62.161 0 0 0 0 42.64645333192 0 0 0 1.805462187404089 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9182 - 260 + NaN NaN 174415 NaN 17994 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22288 89.814 NaN 179870 35 0 15621 0.261 + 19877 NYCNLFNYI 9 43 582.2631558525982 1162.5117587719963 2 582.2635498046875 MULTI HCD FTMS 0 0 0 22283 55956.73046875 0.4323445241498537 10 -0.26267242431640625 5 Unmodified _NYCNLFNYI_ ENSG00000100129|ENST00000652021|EIF3L 74.42276476219924 0.007657080072768255 2 {M(Oxidation (M))|F}NY{I|L} 4 5 55.433 0 0 4.7684 0 0 607.2407380507938 0 607.2407380507938 0 40.74031267727719 0 0 0 1.5 0 0 0.8494850021680094 + {M(Oxidation (M))|F}NY{I|L} 4.7684 + + 83 NaN NaN 116861.1 NaN 17995 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22289 89.817 NaN 238100 35 0 25495 0.261 -1 0 72 573.1181768116776 NaN 0 573.1178588867188 PEAK HCD FTMS 0 0 0 22283 69896.78125 0.6325518007296541 -3 0.07192230224609375 6 NaN NaN 2 {I|L}E 2 -1 7.9588 0 0 0.69556 0 0 163.81300049659882 735.2672823541624 899.0802828507613 0 0 0 0 0 0 0 0 0 {I|L}E 0.69556 - 18 + NaN NaN 127325.2 NaN 17996 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22290 89.821 NaN 141830 35 0 8325.1 0.262 + 29114 TYGRKKNV 8 55 483.2790437350931 964.5435345369863 2 483.2787780761719 MULTI HCD FTMS 0 0 0 22283 49025.0703125 0.23220238196556192 -7 0.17340850830078125 7 Unmodified _TYGRKKNV_ REV__tr|U7SPA4|U7SPA4_FUSNUOMFfamilyoutermembranefactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01678PE=3SV=1 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.3991 0 0 799.4609062184301 0 799.4609062184301 0 -1.4536501951208436 -1.4536501951208436 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3991 - 13 + NaN NaN 117450 NaN 17997 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22291 89.824 NaN 223710 35 0 31027 0.261 -1 GQMECCQTL 9 56 563.7202574531179 NaN 0 563.7201538085938 PEAK HCD FTMS 0 0 0 22283 93431.2734375 0.2364303462994366 -5 0.11441802978515625 8 2 Carbamidomethyl (C) _GQMEC(Carbamidomethyl (C))C(Carbamidomethyl (C))QTL_ ENSG00000144488|ENST00000343063|ESPNL 6.2057823575117 0.2651744870083793 2 H 1 -1 3.0989 0 0 0.27536 0 0 276.9373888302608 708.4091890924436 985.3465779227045 0 0 0 0 0 0 0 0 0 H 0.27536 - 11 + NaN NaN 134993.6 NaN 17998 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22292 89.827 NaN 345570 35 0 56051 0.261 + 652 APLARPKPK 9 62 489.31436945646186 NaN 0 489.3142395019531 PEAK HCD FTMS 0 0 0 22283 46350.6953125 0.18018312390234445 -8 0.1898193359375 9 Unmodified _APLARPKPK_ REV__ENSG00000149115|ENST00000358252|TNKS1BP1;REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 2.0597508629832335 0.2852655770354268 2 A 1 -1 6.9897 0 0 0.71571 0 0 122.106441909156 780.4611497048387 902.5675916139948 0 0 0 0 0 0 0 0 0 A 0.71571 + + 5 + NaN NaN 149883.9 NaN 17999 4291 22283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22294 89.832 NaN 482950 35 0 49463 0.327 -1 0 93 633.3694187770183 1264.7242846208364 2 633.369384765625 MULTI HCD FTMS 0 0 0 22293 441062.84375 0.34205777083203875 12 -0.29099273681640625 1 NaN NaN 2 VM{I|L}[HV]{[HG]|PP}{[DS]|[MA]|[CV]|TT} 9 -1 21.431 0 0 1.6945 0 0 271.14653212715 0 271.14653212715 0 9.066818653688529 0 0 0 1.1307196863200843 0 0 0 VM{I|L}[HV]{[HG]|PP}{[DS]|[MA]|[CV]|TT} 1.6945 - 189 NaN NaN 163991.2 NaN 18000 4292 22293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22295 89.837 NaN 648450 35 0 97328 0.261 + 3707 ELVLRCFSE 9 85 548.2782620883543 1094.5419712435084 2 549.299072265625 MULTI HCD FTMS 0 0 0 22293 6803.02880859375 0.1746732953391479 6 -0.16605377197265625 2 Unmodified _ELVLRCFSE_ REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF 29.081581746732265 0.1154664336125038 2 E{I|L}N{I|L}{I|L}{M(Oxidation (M))|F}T 7 -1 59.25 0 0 5.4132 0 0 0 261.08774744205317 261.08774744205317 29.93553741241284 0 0 0 0 0 0 1.4436726795685342 0.6861818737241735 E{I|L}N{I|L}{I|L}{M(Oxidation (M))|F}T 5.4132 - 280 + NaN NaN 185375.4 NaN 18001 4292 22293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22296 89.84 NaN 236440 35 0 75823 0.263 + -1 FECYCCDC 8 35 405.1188790266719 NaN 0 405.1188659667969 PEAK HCD FTMS 0 0 0 22293 70317.203125 0.31215459802795303 -9 0.222625732421875 3 4 Carbamidomethyl (C) _FEC(Carbamidomethyl (C))YC(Carbamidomethyl (C))C(Carbamidomethyl (C))DC(Carbamidomethyl (C))_ REV__ENSG00000125386|ENST00000637812|FAM193A;REV__ENSG00000146067|ENST00000514747|FAM193B;REV__ENST00000506955.5_1_5:176959168-176966109:-|nuORF;REV__ENST00000510479.5_1_5:176959168-176964941:-|nuORF;REV__nc|ENSG00000125386|P78312-2|FAM193A;REV__nc|ENSG00000125386|P78312-4|FAM193A;REV__nc|ENSG00000125386|P78312-5|FAM193A;REV__nc|ENSG00000125386|P78312-6|FAM193A;REV__nc|ENSG00000125386|P78312|FAM193A;REV__nc|ENSG00000146067|Q96PV7|FAM193B 0.45834013312273997 0.38822285293237185 2 G 1 -1 7.7642 0 0 0.96065 0 0 460.1265081980719 288.0498585784985 748.1763667765704 0 0 0 0 0 0.5 0 0 0 G 0.96065 - 3 + NaN NaN 126650.9 NaN 18002 4292 22293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22297 89.844 NaN 138890 35 0 16011 0.261 + 13672 KYPENFFLL 9 47 585.8134557780826 NaN 0 585.8135375976562 PEAK HCD FTMS 0 0 0 22293 80855.8125 0.3837867680214924 -4 0.10472869873046875 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 21.536976647645854 0.17708171045360593 2 {I|L}{M(Oxidation (M))|F} 2 8 20.969 0 0 1.7928 0 0 131.0940570114729 775.3371065729124 906.4311635843853 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.7928 - 10 + NaN NaN 104305.9 NaN 18003 4292 22293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22298 89.847 NaN 67732 35 0 12848 0.263 -1 0 24 467.1020168739247 NaN 0 467.10211181640625 PEAK HCD FTMS 0 0 0 22293 46422.65625 0.6577660528690217 -2 0.0523681640625 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112112.6 NaN 18004 4292 22293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22299 89.85 NaN 122200 35 0 12340 0.261 + 14542 LFFPGWCLFF 10 55 638.815546227412 NaN 0 638.8008422851562 PEAK HCD FTMS 0 0 0 22293 23618.875 1 0 0 6 Unmodified _LFFPGWCLFF_ REV__ENSG00000258839|ENST00000555147|MC1R 7.101721422024254 0.3341061997659158 2 {M(Oxidation (M))|F}{I|L}NE 4 -1 19.68 0 0 1.5428 0 0 165.07218024603645 604.2720430963499 769.3442233423864 0 0 0 0 0 0 0 0 0.4247425010840047 {M(Oxidation (M))|F}{I|L}NE 1.5428 - 77 + NaN NaN 115553.8 NaN 18005 4292 22293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22301 89.855 NaN 1323300 35 0 55133 0.327 -1 0 127 619.8696707185969 1237.7247885039938 2 619.8692626953125 MULTI HCD FTMS 0 0 0 22300 1384295.625 0.7372608499896711 -7 0.17011260986328125 1 NaN NaN 2 QA 2 -1 9.8865 0 0 0.79877 0 0 651.4042138693139 384.22361169986567 1035.6278255691795 0 0 0 0 0 0.7134679910804405 0 0 0 QA 0.79877 - 401 + NaN NaN 306807.7 NaN 18006 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22302 89.859 NaN 1186600 35 0 130310 0.263 + 3605 EKLKNGRV 8 87 472.28799803936454 942.5614431455291 2 472.28778076171875 MULTI HCD FTMS 0 0 0 22300 1212059.25 0.5819087438136961 -1 0.02288818359375 2 Unmodified _EKLKNGRV_ ENSG00000165115|ENST00000297814|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;nc|ENSG00000165115|Q86VH2-3|KIF27 7.910154910731844 0.5302565402355366 2 {M(Oxidation (M))|F} 1 8 6.0302 0 0 0.63976 0 0 487.3347413406447 305.1608749133028 792.4956162539474 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 0.63976 - 4 + NaN NaN 286706 NaN 18007 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22303 89.863 NaN 1336400 35 0 177320 0.261 -1 0 102 539.7753191711168 1077.5360854090336 2 539.775146484375 MULTI HCD FTMS 0 0 0 22300 744944.1875 0.03854418656307972 -7 0.17011260986328125 3 NaN NaN 2 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 87.938 0 0 8.161 0 0 0 279.0958651178344 279.0958651178344 50.185238507372745 0 0 0 0 2.5114393726401687 1.3979400086720375 0.6861818737241735 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.161 - 2529 + NaN NaN 302825 NaN 18008 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22304 89.866 NaN 282330 35 0 12911 0.261 -1 0 86 589.3431318065191 1176.671710679838 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22300 172005.75 0.03432643850659041 69 -1.7709808349609375 4 NaN NaN 2 {M(Oxidation (M))|F}AQ 3 -1 14.693 0 0 1.2487 0 0 166.18681107786477 661.2958885334527 827.4826996113175 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}AQ 1.2487 - 223 + NaN NaN 127713.7 NaN 18009 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22305 89.87 NaN 154030 35 0 9041 0.261 -1 0 73 641.8826567312225 1281.7507605292449 2 641.8822021484375 MULTI HCD FTMS 0 0 0 22300 164328.34375 0.2894166071249502 21 -0.5023040771484375 5 NaN NaN 2 M 1 -1 8.9794 0 0 0.70056 0 0 692.436917347211 455.24994836978755 1147.6868657169985 0 0 0 0 0 0.3494850021680094 0 0 0 M 0.70056 - 49 + NaN NaN 109232.4 NaN 18010 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22306 89.873 NaN 292890 35 0 47105 0.263 + 20863 PIGVEGIQVL 10 41 512.8054365993609 1023.5963202655217 2 512.8056640625 MULTI HCD FTMS 0 0 0 22300 162394 0.9546633873394774 2 -0.0518341064453125 6 Unmodified _PIGVEGIQVL_ ENSG00000174498|ENST00000327987|IGDCC3 26.268140514670165 0.2654086933305545 2 {I|L}QV{I|L} 4 6 55.433 0 0 5.4155 0 0 552.2900735829375 0 552.2900735829375 0 48.44335023848103 0 0 0 1.5 0 0 0.8494850021680094 + {I|L}QV{I|L} 5.4155 + + 28 NaN NaN 143235.9 NaN 18011 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22307 89.876 NaN 520750 35 0 69732 0.261 + 31516 VYGFPVNQLF 10 93 592.311454274892 1182.6083556165838 2 592.310546875 MULTI HCD FTMS 0 0 0 22300 136908.046875 0.6418647530625894 -1 0.02288818359375 7 Unmodified _VYGFPVNQLF_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 68.08070601005525 0.01985953044443068 2 [YV]G{M(Oxidation (M))|F}[VP]NQ{I|L}{M(Oxidation (M))|F} 10 0 + 72.427 0 0 6.1243 6.1243 87.987 0 0 0 17.269987279362624 54.366903183326514 17.269987279362624 9.164539485499255 0 2.1747425010840047 1.3010299956639813 0 0.3054621874040891 + + [YV]G{M(Oxidation (M))|F}[VP]NQ{I|L}{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VP]N[AG]{I|L}{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VP]GGQ{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}YV[VP]NQ{I|L}{M(Oxidation (M))|F};[YV][Y{I|L}][HT]Q{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}YV[VP]N[AG]{I|L}{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}YV[VP]GGQ{I|L}{M(Oxidation (M))|F};[YV]G{[VA]|[{I|L}G]}{[WT]|[RM]}Q{I|L}{M(Oxidation (M))|F};[YV]G{[DS]|[MA]|[CV]|TT}[RV]Q{I|L}{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}[{I|L}V][{M(Oxidation (M))|F}T]NQ{I|L}{M(Oxidation (M))|F} 6.1243;5.3494;5.3494;4.1376;3.5443;3.3627;3.3627;3.2331;3.0671;2.8692 +;-;-;-;-;-;-;-;-;- + 1280 NaN NaN 194289.8 NaN 18012 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22308 89.88 NaN 141690 35 0 45311 0.261 -1 LFCTILICYS 10 46 637.8119251751956 1273.609297417191 2 637.8118286132812 MULTI HCD FTMS 0 0 0 22300 53703.78515625 0.5133174904325412 13 -0.31678009033203125 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LFCTILIC(Carbamidomethyl (C))YS_ ENST00000288447.8_1_X:33357402-33357459:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115992.7 NaN 18013 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22309 89.883 NaN 88374 35 0 15059 0.262 -1 MNSLAEVVF 9 35 526.2608684306067 NaN 0 526.261474609375 PEAK HCD FTMS 0 0 0 22300 31501.8203125 0.6988257563415813 1 -0.0361785888671875 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MNSLAEVVF_ ENST00000535914.1_1_12:26278140-26278185:-|nuORF 6.723162845929126 0.26266733336404485 2 V 1 -1 11.99 0 0 1.1413 0 0 786.3604992129727 162.05596338443596 948.4164625974087 0 0 0 0 0 0.5 0 0 0 V 1.1413 + + 3 + NaN NaN 100841 NaN 18014 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22310 89.886 NaN 366250 35 0 64304 0.261 -1 QCPQCDRCF 9 63 578.7192993164062 NaN 0 578.7192993164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Carbamidomethyl (C) _QCPQCDRC(Carbamidomethyl (C))F_ ENSG00000204947|ENST00000378061|ZNF425;ZNF425|p.R340C|1|0.17|ENSG00000204947|chr7:149104853-149104853|G/A|missense_variant 7.289230182591677 0.2599242500475609 2 V 1 -1 0.48455 0 0 0.041937 0 0 739.2177004865249 314.11374841861567 1053.3314489051406 0 0 0 0 0 0 0 0 0 V 0.041937 - 2 + NaN NaN 148846.3 NaN 18015 4293 22300 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22312 89.891 NaN 15057000 35 0 2525100 0.327 + 27637 TAISLFYEL 9 107 528.7843208890033 1055.5540888448065 2 528.7850341796875 MULTI HCD FTMS 0 0 0 22311 18241888 0.18204929081176557 -5 0.144287109375 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 108.34 0 0 10.264 10.264 96.032 0 0 0 14.758950235313861 14.758950235313861 14.758950235313861 12.781512503836439 0 2.6861818737241734 1.5228787452803376 2.0669015600442577 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{M(Oxidation (M))|F}{I|L}YE{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{M(Oxidation (M))|F}Y{I|L}E{I|L};[TA]{I|L}S{I|L}{M(Oxidation (M))|F}EY{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}[TA]{M(Oxidation (M))|F}{I|L}YE{I|L};[TA]{I|L}S{M(Oxidation (M))|F}YE{I|L}{I|L};[TA]{I|L}S{I|L}E{M(Oxidation (M))|F}Y{I|L};{[TV]|[{I|L}S]}[TA]{M(Oxidation (M))|F}Y{I|L}E{I|L} 10.264;9.0532;7.9464;7.8648;7.7542;7.1976;6.7355;6.6798;6.1488;5.5471 +;-;-;-;-;-;-;-;-;- + 3570 NaN NaN 1869792.1 NaN 18016 4294 22311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22313 89.896 NaN 2912000 35 0 532470 0.236 + 3650 ELKLQNVLKH 10 100 611.3713603998359 NaN 0 611.3565063476562 PEAK HCD FTMS 0 0 0 22311 148010.265625 1 0 0 2 Unmodified _ELKLQNVLKH_ ENST00000442423.1_1:143721055-143721151:-|nuORF 5.731851221503515 0.33527861879838866 2 N 1 9 3.9794 0 0 0.32599 0 0 106.09484098552805 997.5434818656627 1103.6383228511907 0 0 0 0 0 0 0 0 0 + N 0.32599 + + 85 + NaN NaN 460984.8 NaN 18017 4294 22311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22314 89.899 NaN 707040 35 0 55709 0.261 + -1 MSATCRDMY 9 88 567.7210579881603 1133.4275630431205 2 567.72705078125 MULTI HCD FTMS 0 0 0 22311 149594.328125 0.8133263526064486 -2 0.0590667724609375 3 Carbamidomethyl (C) _MSATC(Carbamidomethyl (C))RDMY_ REV__ENSG00000160185|ENST00000319294|UBASH3A;REV__ENST00000473381.1_1_21:43855574-43867301:+|nuORF;REV__nc|ENSG00000160185|P57075-2|UBASH3A 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 43.972 0 0 3.8796 0 0 559.2184104339824 0 559.2184104339824 0 11.903959040089589 0 0 0 1.3807196863200843 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8796 - 375 + NaN NaN 195376.7 NaN 18018 4294 22311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22315 89.902 NaN 332820 35 0 51758 0.261 + 20883 PIRDYYEQ 8 79 542.2587500642876 1082.502947195375 2 542.259521484375 MULTI HCD FTMS 0 0 0 22311 30051.41015625 0.5060798368474326 4 -0.10698699951171875 4 Unmodified _PIRDYYEQ_ REV__ENSG00000068976|ENST00000164139|PYGM;REV__nc|ENSG00000068976|P11217-2|PYGM 12.531546534597751 0.5015908124873912 2 [{I|L}P][C(Carbamidomethyl (C))K][WH]DQ 8 -1 + 19.116 0 0 1.7659 1.7659 83.156 0 0 0 0.29045612817199995 2.9698372174895127 0.29045612817199995 8.201075205960894 0 0 1.3979400086720375 0.3252574989159953 0 [{I|L}P][C(Carbamidomethyl (C))K][WH]DQ;[{I|L}P]T{M(Oxidation (M))|F}[VS][DP][HA];[{I|L}P]T{M(Oxidation (M))|F}[HQ]{[HG]|PP}{M(Oxidation (M))|F} 1.7659;1.0083;0.69936 -;-;- 282 NaN NaN 143447.2 NaN 18019 4294 22311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22317 89.907 NaN 743300 35 0 64725 0.327 + 28259 TLLSKRRS 8 80 480.8012458812737 959.5879388293474 2 480.80108642578125 MULTI HCD FTMS 0 0 0 22316 801025.3125 0.6422164285155929 1 -0.03936767578125 1 Unmodified _TLLSKRRS_ ENST00000490962.1_1_3:72926935-72927124:-|nuORF 8.593279151180031 0.5292430274356741 2 A 1 8 9.2917 0 0 0.96831 0 0 105.08012996807857 780.458815472879 885.5389454409576 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.96831 - 34 + NaN NaN 197772.5 NaN 18020 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22318 89.911 NaN 1376000 35 0 281180 0.261 + -1 LEPIMEFAE 9 78 547.7577992135698 1093.5010454939395 2 547.7577514648438 MULTI HCD FTMS 0 0 0 22316 372861.375 0.08429168827020353 -4 0.1075286865234375 2 Oxidation (M) _LEPIM(Oxidation (M))EFAE_ REV__ENSG00000114248|ENST00000316428|LRRC31;REV__nc|ENSG00000114248|Q6UY01-2|LRRC31;REV__nc|ENSG00000114248|Q6UY01-3|LRRC31;REV__nc|ENSG00000114248|Q6UY01-4|LRRC31 11.640296217721598 0.25978676193971967 2 {I|L}E 2 -1 24.776 0 0 2.2658 0 0 0 848.3489712868231 848.3489712868231 10.172203223519531 0 0 0 0 0 0 0.3807196863200844 0 {I|L}E 2.2658 + + 202 + NaN NaN 297658.7 NaN 18021 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22319 89.915 NaN 2579100 35 0 372600 0.261 + 14502 LFAVFQTTF 9 98 537.286881680068 1072.5592104269358 2 537.2976684570312 MULTI HCD FTMS 0 0 0 22316 76870.75 0.04908064867294551 10 -0.24554443359375 3 Unmodified _LFAVFQTTF_ ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR 92.65332237495696 0.004456439685314431 2 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 9 43.938 0 0 4.0966 0 0 148.1002998109148 0 148.1002998109148 0 -0.22731398832759453 -0.22731398832759453 0 0 0 0 1.9604093769761874 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 4.0966 - 2299 + NaN NaN 483595.7 NaN 18022 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22320 89.918 NaN 942830 35 0 335890 0.261 -1 0 86 633.3694187770183 1264.7242846208364 2 633.3717041015625 MULTI HCD FTMS 0 0 0 22316 316633.40625 0.24555892351299505 15 -0.34911346435546875 4 NaN NaN 2 VPE[{I|L}P]{[HG]|PP}[{M(Oxidation (M))|F}V] 9 -1 15.775 0 0 1.2473 0 0 271.1468678205094 0 271.1468678205094 0 3.406950776803285 0 0 0 1.4163865622122673 0 0.3494850021680094 0 VPE[{I|L}P]{[HG]|PP}[{M(Oxidation (M))|F}V] 1.2473 - 148 NaN NaN 234371 NaN 18023 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22321 89.921 NaN 660490 35 0 64575 0.261 + 11332 IYMDTLNIF 9 77 565.2837872709302 1128.5530216086604 2 565.2835083007812 MULTI HCD FTMS 0 0 0 22316 237325.9375 0.6960298757161191 1 -0.03936767578125 5 Unmodified _IYMDTLNIF_ ENSG00000165678|ENST00000372134|GHITM 122.17920374332846 0.0010792739174387011 2 [Y{I|L}]MDT{I|L}N{I|L}{M(Oxidation (M))|F} 9 0 + 95.715 0 0 8.4812 8.4812 95.159 0 0 0 5.298859261803983 5.298859261803983 5.298859261803983 16.267959391884546 0 3.079689690656103 1.3010299956639813 0.5796896906561032 0.7059771852360797 + + [Y{I|L}]MDT{I|L}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]MDT{I|L}GG{I|L}{M(Oxidation (M))|F};[Y{I|L}]MDKAE{I|L}{M(Oxidation (M))|F};[Y{I|L}]MDK{[CP]|[EA]}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YYPAE{I|L}{M(Oxidation (M))|F} 8.4812;7.0397;6.0507;5.9107;4.9656 +;-;-;-;- + 423 NaN NaN 197218.2 NaN 18024 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22322 89.925 NaN 1160600 35 0 219980 0.261 + 7869 FYTFPFQQL 9 71 595.7980501877404 1189.5815474422807 2 595.7976684570312 MULTI HCD FTMS 0 0 0 22316 245815.53125 0.061706273039156344 -5 0.1270904541015625 6 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 147.05914393524117 1.1935124485855994E-05 2 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 88.087 0 0 7.4049 7.4049 91.017 0 0 0 4.762036441594191 73.39448436569874 4.762036441594191 9.208187539523749 0 2.555462187404089 0 2.223197507588033 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]WWQ{I|L};[Y{M(Oxidation (M))|F}]T[SG]{[HG]|PP}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 7.4049;6.6308;6.6308;5.8604;2.7628;0.34922 +;-;-;-;-;- + 594 NaN NaN 284873.9 NaN 18025 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22323 89.928 NaN 451480 35 0 37578 0.261 + 22634 QVPEAWEEL 9 67 550.7664650779053 1099.5183772226105 2 550.7665405273438 MULTI HCD FTMS 0 0 0 22316 133341.6875 0.10064923178940166 -4 0.1075286865234375 7 Unmodified _QVPEAWEEL_ ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9 7.289230182591677 0.29575926068275815 2 {I|L}N{I|L}{[CT]|[{M(Oxidation (M))|F}G]}Y{[QN]|[E{I|L}]|[KN]} 8 7 14.218 0 0 1.2931 0 0 132.0256442107945 0 132.0256442107945 0 3.249256301612748 0 0 0 0 0 0.5 0 {I|L}N{I|L}{[CT]|[{M(Oxidation (M))|F}G]}Y{[QN]|[E{I|L}]|[KN]} 1.2931 - 125 + NaN NaN 171769 NaN 18026 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22324 89.931 NaN 430020 35 0 177210 0.261 -1 VCMCACMCV 9 61 583.1862568701615 1164.357960807123 2 583.1864624023438 MULTI HCD FTMS 0 0 0 22316 145617.234375 0.631040307140717 -4 0.1075286865234375 8 3 Carbamidomethyl (C),2 Oxidation (M) _VCM(Oxidation (M))C(Carbamidomethyl (C))AC(Carbamidomethyl (C))M(Oxidation (M))C(Carbamidomethyl (C))V_ nc|nan|Q96N68|C18orf15;REV__nc|nan|Q96N68|C18orf15 2.302733041254933 0.33356062215410776 2 EC 2 -1 14.949 0 0 1.2838 0 0 0 929.2452165584269 929.2452165584269 0.6567532885598126 0 0 0 0 0 0 0 0 EC 1.2838 - 18 + NaN NaN 163032.9 NaN 18027 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22325 89.935 NaN 373330 35 0 74206 0.262 + 30421 VLPEAIISF 9 48 494.78925313741894 987.5639533416379 2 494.7891845703125 MULTI HCD FTMS 0 0 0 22316 98131.34375 0.17927851343188828 -4 0.1075286865234375 9 Unmodified _VLPEAIISF_ REV__ENSG00000254656|ENST00000649591|RTL1 37.97399986684836 0.07464525285885698 2 {I|L}{I|L}S{M(Oxidation (M))|F} 4 -1 54.68 0 0 5.5369 0 0 509.2847277963588 0 509.2847277963588 0 54.680475292681265 0 0 0 1.8494850021680094 0 0.4247425010840047 0 {I|L}{I|L}S{M(Oxidation (M))|F} 5.5369 + + 21 NaN NaN 142706.4 NaN 18028 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22326 89.938 NaN 757390 35 0 64214 0.261 + -1 YDCWQMEI 8 100 572.7254869293001 1143.4364209254002 2 572.7258911132812 MULTI HCD FTMS 0 0 0 22316 180641.90625 0.5170146753134197 -4 0.1075286865234375 10 Carbamidomethyl (C) _YDC(Carbamidomethyl (C))WQMEI_ REV__ENSG00000196811|ENST00000651502|CHRNG;REV__nc|ENSG00000196811|P07510-2|CHRNG 11.640296217721598 0.50814828952472 2 {I|L}{M(Oxidation (M))|F}EY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7 -1 20.31 0 0 1.7762 0 0 165.94574564538908 0 165.94574564538908 0 4.57911685013279 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}EY{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 1.7762 - 400 + NaN NaN 217027.1 NaN 18029 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22327 89.941 NaN 419890 35 0 37765 0.261 -1 0 75 597.8563626585645 1193.698172383929 2 597.8564453125 MULTI HCD FTMS 0 0 0 22316 82820.9140625 0.02909277066942229 71 -1.8238067626953125 11 NaN NaN 2 M 1 -1 8.9794 0 0 0.75223 0 0 633.3335762874932 426.30081549335415 1059.6343917808474 0 0 0 0 0 0.5 0 0 0 M 0.75223 - 38 + NaN NaN 151920.5 NaN 18030 4295 22316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22329 89.946 NaN 749040 35 0 61416 0.327 + -1 MSATCRDMY 9 100 567.7210579881603 1133.4275630431205 2 567.7222290039062 MULTI HCD FTMS 0 0 0 22328 183929.03125 1 0 0 1 Carbamidomethyl (C) _MSATC(Carbamidomethyl (C))RDMY_ REV__ENSG00000160185|ENST00000319294|UBASH3A;REV__ENST00000473381.1_1_21:43855574-43867301:+|nuORF;REV__nc|ENSG00000160185|P57075-2|UBASH3A 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 43.972 0 0 3.8796 0 0 559.21814309509 0 559.21814309509 0 14.023722004121453 0 0 0 1.3807196863200843 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8796 - 217 + NaN NaN 217779.9 NaN 18031 4296 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22330 89.951 NaN 189320 35 0 33740 0.261 + 5252 FFDPSLLHLL 10 44 601.3347834774651 NaN 0 601.3343505859375 PEAK HCD FTMS 0 0 0 22328 45849.46875 0.06098925958047949 11 -0.2482757568359375 2 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 36.12702656103203 0.15814681568024677 2 DP{[TV]|[{I|L}S]}{I|L} 5 5 23.188 0 0 1.9312 0 0 294.1384090891716 378.21442590885005 672.3528349980216 0 0 0 0 0 1.8494850021680094 0 0 0 + DP{[TV]|[{I|L}S]}{I|L} 1.9312 + + 11 + NaN NaN 119191.3 NaN 18032 4296 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22331 89.954 NaN 593780 35 0 139840 0.261 -1 IMCCNCVSDF 10 79 575.7042242915437 1149.3938956498873 2 575.7030639648438 MULTI HCD FTMS 0 0 0 22328 91222.953125 0.6991904171973277 -1 0.03936767578125 3 Oxidation (M) _IM(Oxidation (M))CCNCVSDF_ ENSG00000181544|ENST00000650831|FANCB;FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant 6.723162845929126 0.4397169348982109 2 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 26.33 0 0 2.2908 0 0 130.92015368206995 0 130.92015368206995 0 15.009876598107766 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2908 - 804 + NaN NaN 181922.9 NaN 18033 4296 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22332 89.957 NaN 258440 35 0 34831 0.261 -1 0 59 599.0854860493575 NaN 0 598.79150390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 {M(Oxidation (M))|F}{I|L}R{I|L} 4 -1 11.402 0 0 0.95323 0 0 204.61627131570873 459.1549891770363 663.7712604927451 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}R{I|L} 0.95323 - 45 + NaN NaN 143027.6 NaN 18034 4296 22328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22334 89.962 NaN 3258000 35 0 449650 0.327 -1 0 116 555.2398843727365 1108.4652158122728 2 556.7305908203125 MULTI HCD FTMS 0 0 0 22333 254442.484375 0.2166881727194988 -3 0.0710296630859375 1 NaN NaN 2 KEYNY{I|L}E 7 -1 40.748 0 0 3.6761 0 0 0 166.02971826724846 166.02971826724846 19.577314255892595 0 0 0 0 0 0 0.48965182871044377 0.5866968715561641 KEYNY{I|L}E 3.6761 - 3373 + NaN NaN 414804.8 NaN 18035 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22335 89.967 NaN 1280700 35 0 500900 0.261 -1 0 88 633.3694187770183 1264.7242846208364 2 633.3696899414062 MULTI HCD FTMS 0 0 0 22333 362242.8125 0.28093041773863586 17 -0.3950958251953125 2 NaN NaN 2 {[TV]|[{I|L}S]}AVM{I|L}[WR]N 9 -1 25.701 0 0 2.0322 0 0 0 191.10048025976144 191.10048025976144 15.524079830418373 0 0 0 0 0.6382104921644451 0 1.1861818737241734 0 {[TV]|[{I|L}S]}AVM{I|L}[WR]N 2.0322 - 256 NaN NaN 288135.6 NaN 18036 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22336 89.97 NaN 600240 35 0 64553 0.261 + 32292 VYTVVDEMFL 10 60 608.3025575845322 1214.5905622358644 2 608.803955078125 MULTI HCD FTMS 0 0 0 22333 165713.328125 0.24538117184148053 7 -0.16089630126953125 3 Unmodified _VYTVVDEMFL_ ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 118.89474601620944 4.021404175452203E-05 2 VVDEM{M(Oxidation (M))|F}{I|L} 7 3 88.18 0 0 7.2601 0 0 363.17933408146376 0 363.17933408146376 0 73.76750709602099 0 0 0 2.805462187404089 0 1.416386562212267 0 + VVDEM{M(Oxidation (M))|F}{I|L} 7.2601 + + 335 NaN NaN 185023.8 NaN 18037 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22337 89.973 NaN 613960 35 0 75676 0.261 + -1 LYSHEEDSM 9 91 563.7202574531179 NaN 0 563.7202758789062 PEAK HCD FTMS 0 0 0 22333 209083.75 0.5290920438021546 1 -0.03595733642578125 4 Oxidation (M) _LYSHEEDSM(Oxidation (M))_ REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1 12.531546534597751 0.23452071659215576 2 E 1 -1 8.2268 0 0 0.731 0 0 796.3249925900265 197.03562341861564 993.3606160086421 0 0 0 0 0 0.4247425010840047 0 0 0 E 0.731 + + 45 + NaN NaN 183163.9 NaN 18038 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22338 89.977 NaN 348420 35 0 20045 0.264 -1 0 76 407.90650160105304 1220.6976754033592 3 407.9062194824219 MULTI HCD FTMS 0 0 0 22333 337490.5625 1 0 0 5 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}K 3 -1 9.6477 0 0 0.79035 0 0 0 847.4549704005234 847.4549704005234 3.66154313238005 0 0 0 0 0.4247425010840047 0 0.2742275032520141 0.2614393726401688 {[QN]|[E{I|L}]|[KN]}K 0.79035 - 19 NaN NaN 138317.6 NaN 18039 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22339 89.98 NaN 529530 35 0 42984 0.261 + -1 PLEPLLRCFV 10 95 622.3475807826734 1242.6806086321467 2 622.3472900390625 MULTI HCD FTMS 0 0 0 22333 182691.171875 0.6153155012604978 3 -0.08379364013671875 6 Carbamidomethyl (C) _PLEPLLRC(Carbamidomethyl (C))FV_ REV__ENST00000395841.6_1_20:55953421-55953598:+|nuORF 10.073929032068715 0.4168838835836452 2 VQ[VG]{I|L}T{[SA]|[TG]} 8 -1 14.698 0 0 1.1828 0 0 469.2324218891537 0 469.2324218891537 0 9.059100297186967 0 0 0 0 0 0.3807196863200844 0 VQ[VG]{I|L}T{[SA]|[TG]} 1.1828 - 388 NaN NaN 162958.1 NaN 18040 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22340 89.983 NaN 312360 35 0 57707 0.261 + 22648 QWEDLTPLTF 10 38 625.3085913690268 1248.6026298048534 2 625.30810546875 MULTI HCD FTMS 0 0 0 22333 150199.0625 0.913141923932736 1 -0.03595733642578125 7 Unmodified _QWEDLTPLTF_ ENSG00000071553|ENST00000369762|ATP6AP1 33.4449034751529 0.20229115034201947 2 T[{I|L}P]T{M(Oxidation (M))|F} 5 5 41.466 0 0 3.321 0 0 671.2913103781866 0 671.2913103781866 0 38.076512587389644 0 0 0 1.5 0 0.4247425010840047 0 + T[{I|L}P]T{M(Oxidation (M))|F} 3.321 + + 26 NaN NaN 131162.5 NaN 18041 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22341 89.987 NaN 457050 35 0 90175 0.262 + 7443 FVTICILLV 9 45 510.81311163976903 1019.6116703463381 2 511.2862854003906 MULTI HCD FTMS 0 0 0 22333 39473.28125 0.3828577901896755 1 -0.03595733642578125 8 Unmodified _FVTICILLV_ REV__ENSG00000148110|ENST00000375344|MFSD14B;REV__ENSG00000156875|ENST00000370152|MFSD14A;REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B 4.75600775471527 0.31496297302216103 2 VE{I|L}{[MG]|[TS]}E[{I|L}V] 8 -1 16.375 0 0 1.606 0 0 131.15291541853531 0 131.15291541853531 0 15.26593150440647 0 0 0 0 0 0 0 VE{I|L}{[MG]|[TS]}E[{I|L}V] 1.606 - 60 + NaN NaN 174398.2 NaN 18042 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22342 89.99 NaN 173970 35 0 23919 0.261 + 653 APLARPKPK 9 51 489.31436945646186 NaN 0 489.3145446777344 PEAK HCD FTMS 0 0 0 22333 135244.953125 0.525749570352546 -2 0.0553741455078125 9 Unmodified _APLARPKPK_ REV__ENSG00000149115|ENST00000358252|TNKS1BP1;REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant 2.0597508629832335 0.2852655770354268 2 W 1 -1 2.4743 0 0 0.25335 0 0 139.11920414554248 648.3848360650999 787.5040402106424 0 0 0 0 0 0 0 0 0 W 0.25335 - 1 + NaN NaN 136760.4 NaN 18043 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22343 89.993 NaN 115800 35 0 9074.7 0.261 + 22459 QQRLLGAQ 8 71 457.26445980681626 912.5143666804325 2 457.2644348144531 MULTI HCD FTMS 0 0 0 22333 106185.4765625 0.8668478033835388 1 -0.03595733642578125 10 Unmodified _QQRLLGAQ_ REV__ENSG00000140497|ENST00000268099|SCAMP2;REV__ENST00000563829.5_1_15:75137426-75144629:-|nuORF;REV__ENST00000566557.5_1_15:75144368-75165596:-|nuORF;REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF 4.75600775471527 0.5349361699807423 2 {I|L} 1 -1 6.9897 0 0 0.76598 0 0 474.2846436353138 322.11936365299067 796.4040072883045 0 0 0 0 0 0 0 0 0 {I|L} 0.76598 + + 42 + NaN NaN 129846.7 NaN 18044 4297 22333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22345 89.998 NaN 2382700 35 0 931780 0.326 -1 0 82 633.3594977560446 632.3522212894445 1 633.3604736328125 MULTI HCD FTMS 0 0 0 22344 1350519.5 0.7530084357472281 -1 0.03595733642578125 1 NaN NaN 2 VTA{I|L} 4 -1 29.46 0 0 4.6588 0 0 230.10550124336095 0 230.10550124336095 0 0.07454907804531175 0 0 0 0 0 0.75 0 VTA{I|L} 4.6588 - 158 NaN NaN 473327.2 NaN 18045 4298 22344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22346 90.003 NaN 519310 35 0 86650 0.263 -1 LASAYLEVL 9 62 510.7842705527598 NaN 0 510.81280517578125 PEAK HCD FTMS 0 0 0 22344 67393.40625 0.21504880653585778 -1 0.03595733642578125 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LASAYLEVL_ ENST00000564224.1_1_9:34664152-34664551:-|nuORF 25.399314129420986 0.1511568710901456 2 VE{I|L} 3 -1 23.971 0 0 2.3511 0 0 131.09531750959815 544.2390841119749 675.3344016215731 0 0 0 0 0 1.1747425010840047 0 0.3807196863200844 0 VE{I|L} 2.3511 - 57 + NaN NaN 177932.2 NaN 18046 4298 22344 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22348 90.007 NaN 12833000 35 0 1875700 0.327 -1 0 109 539.7753191711168 1077.5360854090336 2 539.7753295898438 MULTI HCD FTMS 0 0 0 22347 18341280 0.9489968912948702 -1 0.0093994140625 1 NaN NaN 2 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 92.141 0 0 8.5511 0 0 0 279.09601310144905 279.09601310144905 42.598397266810785 0 0 0 0 2.4604093769761874 1.6989700043360187 0.7059771852360797 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.5511 - 5920 + NaN NaN 650854.2 NaN 18047 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22349 90.012 NaN 6438600 35 0 2272300 0.221 + 4076 ESGQFPGVCW 10 93 555.2398843727365 1108.4652158122728 2 555.239990234375 MULTI HCD FTMS 0 0 0 22347 7359266 1 0 0 2 Unmodified _ESGQFPGVCW_ ENSG00000213928|ENST00000396864|IRF9;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF 16.149105407346934 0.3600587335443843 2 {[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))E]|[WC]}PGYE{I|L} 9 7 + 36.396 0 0 3.2835 3.2835 88.753 0 0 0 1.9054117800923862 20.236505809304944 1.9054117800923862 32.46629927063205 0 0.9247425010840047 0 0.5356668758921829 0.3252574989159953 {[QN]|[E{I|L}]|[KN]}{[C(Carbamidomethyl (C))E]|[WC]}PGYE{I|L};{[WT]|[RM]}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[C(Carbamidomethyl (C))Q]E{I|L} 3.2835;0.35455 -;- 591 NaN NaN 815343.7 NaN 18048 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22350 90.015 NaN 3061200 35 0 1186100 0.261 + 20897 PKEFILLGFSD 11 91 633.3434153055593 NaN 0 633.358642578125 PEAK HCD FTMS 0 0 0 22347 71357.0078125 1 0 0 3 Unmodified _PKEFILLGFSD_ ENSG00000204703|ENST00000377173|OR2B3 29.84058131909904 0.18007121999966746 2 {I|L}ATV 4 10 22.528 0 0 1.7814 0 0 650.3299776683333 227.0815371149047 877.411514783238 0 0 0 0 0 0 0 1.1382104921644451 0 {I|L}ATV 1.7814 - 298 + NaN NaN 553768.9 NaN 18049 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22351 90.018 NaN 714800 35 0 78498 0.264 -1 0 74 472.28799803936454 942.5614431455291 2 472.28778076171875 MULTI HCD FTMS 0 0 0 22347 740087.125 0.355315277880549 5 -0.11553955078125 4 NaN NaN 2 T 1 -1 10.044 0 0 1.0656 0 0 414.2476831290574 424.23053919010005 838.4782223191575 0 0 0 0 0 0.3054621874040891 0 0 0 T 1.0656 - 23 + NaN NaN 195202.8 NaN 18050 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22352 90.021 NaN 814870 35 0 31137 0.261 -1 0 116 619.8696707185969 1237.7247885039938 2 619.8696899414062 MULTI HCD FTMS 0 0 0 22347 1125959.5 0.599673829081086 -1 0.0093994140625 5 NaN NaN 2 {[HG]|PP}N{[RE]|[WV]}[VS]K 8 -1 10.399 0 0 0.84015 0 0 0 327.14460169010005 327.14460169010005 0.3100635693719056 0 0 0 0 0.9634679910804405 1 0.23965182871044374 0.7302046884880937 {[HG]|PP}N{[RE]|[WV]}[VS]K 0.84015 - 402 + NaN NaN 210676.1 NaN 18051 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22353 90.025 NaN 1374600 35 0 153710 0.262 + 31024 VSPAIFYEL 9 83 519.779349624776 1037.544146316352 2 519.77880859375 MULTI HCD FTMS 0 0 0 22347 746644.5 1 0 0 6 Unmodified _VSPAIFYEL_ REV__ENSG00000174442|ENST00000307897|ZWILCH;REV__nc|ENSG00000174442|Q9H900-2|ZWILCH 64.23631603340823 0.01165516075559909 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 64.992 0 0 6.2641 0 0 0 239.1033877008422 239.1033877008422 15.801032663498688 0 0 0 0 1.8243923658886185 1.5228787452803376 0.6694451763165201 0 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}Y 6.2641 - 513 + NaN NaN 301539.4 NaN 18052 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22354 90.028 NaN 2344700 35 0 300210 0.261 + 4416 EYFSILGP 8 91 463.237142871188 924.459732809176 2 463.2368469238281 MULTI HCD FTMS 0 0 0 22347 917849.625 1 0 0 7 Unmodified _EYFSILGP_ ENST00000549413.1_1_12:56355068-56359795:-|nuORF 93.88341677533236 0.03025875853923581 2 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 2 + 91.72 0 0 9.9214 9.9214 92.637 0 0 0 52.05259398656281 5.484550065040281 5.484550065040281 7.697953115119063 0 2.305462187404089 1.3010299956639813 1.6549471895720984 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}S{I|L}[PG];YE{M(Oxidation (M))|F}{I|L}S{I|L}[PG];EY{M(Oxidation (M))|F}{I|L}[KP]E;YE{I|L}{M(Oxidation (M))|F}S{I|L}[PG];EY{I|L}{M(Oxidation (M))|F}[KP]E;YE{M(Oxidation (M))|F}{I|L}[KP]E;{M(Oxidation (M))|F}YE{I|L}S{I|L}[PG];EY{I|L}S{M(Oxidation (M))|F}{I|L}[PG];[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 9.9214;9.0887;9.0839;8.7686;8.2512;7.9359;7.9311;7.5834;7.489;7.3569 -;-;-;-;-;-;-;-;-;- 1286 + NaN NaN 440427.7 NaN 18053 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22355 90.031 NaN 790000 35 0 58186 0.261 + 10728 IQQALFFNF 9 94 564.2980265171639 1126.5815001011276 2 564.2979125976562 MULTI HCD FTMS 0 0 0 22347 81590.3828125 0.27474570767092 -1 0.0093994140625 8 Unmodified _IQQALFFNF_ ENSG00000104635|ENST00000381237|SLC39A14;nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14 47.748688679222035 0.03472022231463587 2 [Q{I|L}]AQ{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 9 2 [Q{I|L}]AQ + + 35.105 9.2082 2.0916 3.116 3.116 60.16 0 0 0 0 23.889405953541576 0 0 0 1.120371515030528 0 0 0 [Q{I|L}]AQ{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 3.116 - 691 + NaN NaN 225257.8 NaN 18054 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22356 90.035 NaN 625800 35 0 260530 0.261 -1 0 77 628.3829282546999 627.3756517880998 1 628.3832397460938 MULTI HCD FTMS 0 0 0 22347 567957.125 0.8618951553624492 -1 0.0093994140625 9 NaN NaN 2 P 1 -1 1.9897 0 0 0.31715 0 0 83.0676816726686 444.22748743228755 527.2951691049561 0 0 0 0 0 0 0 0 0 P 0.31715 - 7 + NaN NaN 196243.9 NaN 18055 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22357 90.038 NaN 221770 35 0 18538 0.264 + -1 LPCHPSPF 8 55 477.7289275000249 953.4433020668498 2 477.7288513183594 MULTI HCD FTMS 0 0 0 22347 208968.3125 0.8905109975075761 1 -0.0384368896484375 10 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))HPSPF_ REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF 2.8892196856762586 0.5377058178582064 2 CT{M(Oxidation (M))|F} 3 -1 17.536 0 0 1.8392 0 0 584.3145922053249 0 584.3145922053249 0 2.8431811792050645 0 0 0 0 0 0 0 CT{M(Oxidation (M))|F} 1.8392 - 24 + NaN NaN 133040.2 NaN 18056 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22358 90.041 NaN 385030 35 0 11367 0.261 + 20919 PKTDILKENLL 11 105 642.3847453573559 NaN 0 642.384765625 PEAK HCD FTMS 0 0 0 22347 163538.203125 0.7577251778272659 -1 0.0093994140625 11 Unmodified _PKTDILKENLL_ REV__tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1 12.240655878213236 0.3073969278659688 2 W{M(Oxidation (M))|F}V 3 -1 8.9144 0 0 0.69494 0 0 507.37720448248666 340.1968172662719 847.5740217487586 0 0 0 0 0 0.3252574989159953 0 0 0 W{M(Oxidation (M))|F}V 0.69494 - 153 + NaN NaN 163909.9 NaN 18057 4299 22347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22360 90.046 NaN 74782000 35 0 14018000 0.327 + 27638 TAISLFYEL 9 76 528.7843208890033 1055.5540888448065 2 528.7850341796875 MULTI HCD FTMS 0 0 0 22359 77424680 0.7726781397478096 1 -0.0159759521484375 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 110.6 0 0 10.478 10.478 98.394 0 0 0 15.951753372113018 15.951753372113018 15.951753372113018 34.190840781556204 0 2.6861818737241734 1.5228787452803376 1.9916440611282624 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}[YE]{M(Oxidation (M))|F}{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}YE{I|L};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]{I|L}Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L};[TA]{I|L}Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L};[TA]{I|L}Y{[ES]|[DT]|[{I|L}C]}{I|L}{M(Oxidation (M))|F}{I|L} 10.478;7.2388;6.781;6.329;6.329;5.8341;5.6377;5.1635;4.0535;4.0107 +;-;-;-;-;-;-;-;-;- + 1336 NaN NaN 733131.6 NaN 18058 4300 22359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22361 90.05 NaN 1846700 35 0 298640 0.261 -1 0 106 611.3564756461734 1220.6983983591467 2 611.3564453125 MULTI HCD FTMS 0 0 0 22359 2652399.25 0.7257427020584446 11 -0.23944854736328125 2 NaN NaN 2 Q 1 -1 10.485 0 0 0.8589 0 0 722.4310349147125 367.196856473865 1089.6278913885776 0 0 0 0 0 0.5 0 0 0 Q 0.8589 - 208 + NaN NaN 373611.5 NaN 18059 4300 22359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22362 90.054 NaN 357520 35 0 28222 0.261 -1 0 79 630.8607387549225 1259.706924576645 2 630.8610229492188 MULTI HCD FTMS 0 0 0 22359 314099.6875 0.8645729046717795 1 -0.0159759521484375 3 NaN NaN 2 YQN 3 -1 9.6927 0 0 0.76944 0 0 243.2654095393387 608.2639254205686 851.5293349599074 0 0 0 0 0 0 0 0 0 YQN 0.76944 - 120 + NaN NaN 143093.5 NaN 18060 4300 22359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22363 90.057 NaN 700470 35 0 209760 0.261 + -1 NLCSCSFPF 9 80 566.2312033305546 NaN 0 566.2315063476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _NLC(Carbamidomethyl (C))SC(Carbamidomethyl (C))SFPF_ REV__ENSG00000102886|ENST00000406256|GDPD3;REV__nc|ENSG00000102886|Q7L5L3-1|GDPD3 7.910154910731844 0.25691533546754686 2 {I|L}NEESN{I|L} 7 -1 12.317 0 0 1.0895 0 0 165.97276935466545 162.05574976138908 328.02851911605455 0 0 0 0 0 0 0 0.28872548999643577 0 {I|L}NEESN{I|L} 1.0895 - 232 + NaN NaN 192393.5 NaN 18061 4300 22359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22365 90.062 NaN 5100900 35 0 1249300 0.327 + 7870 FYTFPFQQL 9 109 595.7980501877404 1189.5815474422807 2 595.7978515625 MULTI HCD FTMS 0 0 0 22364 2871784.75 0.7208947823274912 1 -0.02864837646484375 1 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 189.77610602135977 4.071947121966932E-13 2 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 97.63 0 0 8.2071 8.2071 90.362 0 0 0 4.963352341680476 59.57295622426193 4.963352341680476 6.50051782809868 0 2.6307196863200843 0 2.4489700043360187 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}Q{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}Q{I|L} 8.2071;7.6606;7.433;7.433;7.1223;6.9709;6.8865;6.8865;6.6626;6.4244 +;-;-;-;-;-;-;-;-;- + 13827 NaN NaN 869357.3 NaN 18062 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22366 90.066 NaN 2616300 35 0 389180 0.261 -1 FPTVTLLSPG 10 106 537.2975915189766 1072.580630104753 2 537.2975463867188 MULTI HCD FTMS 0 0 0 22364 1885706.5 0.5753099465169835 1 -0.02864837646484375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FPTVTLLSPG_ ENST00000369486.7_1_1:117150701-117150863:-|nuORF 10.823927491677226 0.4098686510432541 2 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 -1 51.063 0 0 4.7607 0 0 148.12181087793505 0 148.12181087793505 0 6.307649159064397 0 0 0 0 0 1.9916440611282624 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 4.7607 - 3093 + NaN NaN 480898 NaN 18063 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22367 90.07 NaN 3730300 35 0 803020 0.228 + -1 LEEPDVFVM 9 86 547.7577992135698 1093.5010454939395 2 547.757568359375 MULTI HCD FTMS 0 0 0 22364 2362541 0.5340927831357564 2 -0.03554534912109375 3 Oxidation (M) _LEEPDVFVM(Oxidation (M))_ REV__ENSG00000115423|ENST00000389394|DNAH6;REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 12.531546534597751 0.2520865569484384 2 {I|L}E 2 -1 24.776 0 0 2.2658 0 0 0 848.3504243605327 848.3504243605327 11.515230675649445 0 0 0 0 0 0 0.3807196863200844 0 {I|L}E 2.2658 + + 225 + NaN NaN 552681 NaN 18064 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22368 90.073 NaN 893600 35 0 97031 0.261 + 33167 YEQKQYEL 8 74 550.7664650779053 1099.5183772226105 2 550.766357421875 MULTI HCD FTMS 0 0 0 22364 631144.5625 0.47640176567949166 2 -0.03554534912109375 4 Unmodified _YEQKQYEL_ REV__ENST00000376525.5_1_9:82187705-82189917:+|nuORF 16.942295170755138 0.46913822049235215 2 EY 2 -1 13.856 0 0 1.2602 0 0 151.10181278220745 653.2885202436096 804.390333025817 0 0 0 0 0 0 0 0.28872548999643577 0 EY 1.2602 - 114 + NaN NaN 231986.8 NaN 18065 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22369 90.076 NaN 335540 35 0 26118 0.261 + 15119 LMKPLLVF 8 74 480.8012458812737 959.5879388293474 2 480.80084228515625 MULTI HCD FTMS 0 0 0 22364 182480.140625 0.146302173425026 7 -0.158477783203125 5 Unmodified _LMKPLLVF_ DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000149091|ENST00000456247|DGKZ;ENSG00000157680|ENST00000614521|DGKI;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000157680|O75912|DGKI 2.577480529830294 0.5381683276125971 2 A 1 8 9.732 0 0 1.0142 0 0 61.05550572638658 824.4859102838499 885.5414160102365 0 0 0 0 0 0.4247425010840047 0 0 0 A 1.0142 - 66 + NaN NaN 162999.2 NaN 18066 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22370 90.079 NaN 448110 35 0 95373 0.261 + 30422 VLPEAIISF 9 49 494.78925313741894 987.5639533416379 2 494.7892150878906 MULTI HCD FTMS 0 0 0 22364 80366.203125 0.14682295050520158 2 -0.03554534912109375 6 Unmodified _VLPEAIISF_ REV__ENSG00000254656|ENST00000649591|RTL1 37.97399986684836 0.07464525285885698 2 {I|L}{I|L}S{M(Oxidation (M))|F} 4 -1 55.433 0 0 5.6131 0 0 509.28500238636445 0 509.28500238636445 0 55.43305028184122 0 0 0 1.9247425010840047 0 0.4247425010840047 0 {I|L}{I|L}S{M(Oxidation (M))|F} 5.6131 + + 30 NaN NaN 162553.1 NaN 18067 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22371 90.082 NaN 596160 35 0 52511 0.261 + 7757 FYNDHIYQI 9 84 606.7887213669868 1211.5628898007735 2 607.2913818359375 MULTI HCD FTMS 0 0 0 22364 70782.375 0.23516833008844265 1 -0.02864837646484375 7 Unmodified _FYNDHIYQI_ REV__ENSG00000177000|ENST00000376590|MTHFR;REV__nc|ENSG00000177000|P42898-2|MTHFR 38.61474834105838 0.07170385841135779 2 VE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}TYE 8 -1 57.604 0 0 4.7545 0 0 183.06569106269689 0 183.06569106269689 0 7.44316757407438 0 0 0 0.7302046884880937 0 0.8494850021680094 0.9947026752325154 VE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}TYE 4.7545 - 1356 NaN NaN 186910.7 NaN 18068 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22372 90.086 NaN 587570 35 0 52667 0.261 -1 SPMDIFDMF 9 93 567.7280089614021 1133.4414649896041 2 567.7200317382812 MULTI HCD FTMS 0 0 0 22364 163375.703125 0.7947344206767482 -8 0.20697784423828125 8 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 32.30548876998284 0.10066689432505688 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 48.175 0 0 4.2504 0 0 559.2324669104229 0 559.2324669104229 0 27.206225184280797 0 0 0 1.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2504 + + 271 + NaN NaN 180932.1 NaN 18069 4301 22364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22374 90.091 NaN 486710 35 0 32749 0.327 + 31774 VYLQEFELL 9 62 577.3107481357815 1152.606943338363 2 577.8124389648438 MULTI HCD FTMS 0 0 0 22373 56915.21875 0.29577174761215347 1 -0.00689697265625 1 Unmodified _VYLQEFELL_ ENSG00000136051|ENST00000332180|WASHC4 63.960520009940105 0.0120409805053046 2 [YV]{I|L}QE{M(Oxidation (M))|F}E{I|L}{I|L} 9 0 + 67.445 0 0 5.8515 5.8515 83.899 0 0 0 0.4845500650402812 14.488474775526186 0.4845500650402812 0.4845500650402812 0 2.1549471895720984 0 0 0.7302046884880937 + + [YV]{I|L}QE{M(Oxidation (M))|F}E{I|L}{I|L};[YN]{I|L}{I|L}E{M(Oxidation (M))|F}E{I|L}{I|L};[YV]Q{I|L}E{M(Oxidation (M))|F}E{I|L}{I|L};[YV]{I|L}[AG]E{M(Oxidation (M))|F}E{I|L}{I|L};[YV][AG]{I|L}E{M(Oxidation (M))|F}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[YN]{M(Oxidation (M))|F}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D[SG]{I|L}{I|L};[YV][YE][KP]E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}D{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L};[YV]{I|L}{[RE]|[WV]}SHH{I|L} 5.8515;5.8095;5.7254;4.4191;4.293;4.2525;2.9694;2.6455;1.6386;0.46435 +;-;-;-;-;-;-;-;-;- + 608 NaN NaN 164029 NaN 18070 4302 22373 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22376 90.097 NaN 232300 35 0 15137 0.327 -1 0 67 407.90650160105304 1220.6976754033592 3 407.90631103515625 MULTI HCD FTMS 0 0 0 22375 136184.625 0.4035212836507095 6 -0.14234161376953125 1 NaN NaN 2 N 1 -1 4.464 0 0 0.36569 0 0 150.09103172283318 953.5165994050504 1103.6076311278837 0 0 0 0 0 0.3494850021680094 0 0 0 N 0.36569 - 12 + NaN NaN 125441 NaN 18071 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22377 90.101 NaN 485160 35 0 82584 0.261 + 32220 VYTLDIPVL 9 58 516.80263878748 1031.5907246417598 2 516.8026123046875 MULTI HCD FTMS 0 0 0 22375 114503.28125 0.32319462736083426 -6 0.13531494140625 2 Unmodified _VYTLDIPVL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 81.61307344734483 0.005330412723537057 2 [YV]T{I|L}D{I|L}PV{I|L} 9 0 + 72.916 0 0 7.0683 7.0683 95.495 0 0 0 2.632192780232785 65.92654397121706 2.632192780232785 72.91624401457725 0 2.0356668758921828 0 1.1747425010840047 0 + + [YV]T{I|L}D{I|L}PV{I|L} 7.0683 + + 163 NaN NaN 173117.7 NaN 18072 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22378 90.105 NaN 543240 35 0 46818 0.261 -1 SPMDIFDMF 9 84 567.7280089614021 1133.4414649896041 2 567.7282104492188 MULTI HCD FTMS 0 0 0 22375 83671.359375 0.40701590290478895 -6 0.13531494140625 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 -1 48.175 0 0 4.2504 0 0 559.2323216581399 0 559.2323216581399 0 33.48258770979733 0 0 0 1.5 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2504 + + 390 + NaN NaN 173994.3 NaN 18073 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22379 90.108 NaN 164390 35 0 10473 0.263 + 7098 FRKLLCRFLN 10 61 437.2574313284546 1308.7504645855638 3 437.2574768066406 MULTI HCD FTMS 0 0 0 22375 118493.1171875 0.3479719545110366 2 -0.0548553466796875 4 Unmodified _FRKLLCRFLN_ ENST00000333957.8_1_12:22602190-22602310:-|nuORF 0.6976657623105312 0.47161084886498755 2 Q 1 10 3.9794 0 0 0.30406 0 0 810.4826861205232 367.19647786366676 1177.67916398419 0 0 0 0 0 0 0 0 0 Q 0.30406 - 10 + NaN NaN 124156.2 NaN 18074 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22380 90.112 NaN 658050 35 0 57804 0.261 + 22443 QQILDLHDF 9 80 564.7871266495845 NaN 0 564.799560546875 PEAK HCD FTMS 0 0 0 22375 18474.623046875 0.16271291827114548 2 -0.0548553466796875 5 Unmodified _QQILDLHDF_ ENSG00000135414|ENST00000257868|GDF11 13.90604991867851 0.22786006501039813 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 4 8 19.43 0 0 1.7232 0 0 441.2197478286626 162.05562769107658 603.2753755197392 0 0 0 0 0 0.28872548999643577 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}N 1.7232 - 299 + NaN NaN 190038.5 NaN 18075 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22381 90.115 NaN 178390 35 0 39505 0.261 + 12630 KVVKKADMINK 11 62 637.3853872449542 NaN 0 637.8107299804688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KVVKKADMINK_ ENSG00000120539|ENST00000375940|MASTL;nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL 1.1933415558491238 0.338734977139133 2 S 1 11 6.2371 0 0 0.49005 0 0 653.4550319298735 529.2448214166624 1182.6998533465357 0 0 0 0 0 0 0 0.2742275032520141 0 S 0.49005 - 4 + NaN NaN 125197.4 NaN 18076 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22382 90.118 NaN 221140 35 0 14440 0.262 + -1 QPMSTFLMI 9 75 542.2666616515099 NaN 0 542.740966796875 PEAK HCD FTMS 0 0 0 22375 33761.21484375 1 0 0 7 Oxidation (M) _QPM(Oxidation (M))STFLMI_ REV__ENSG00000175518|ENST00000380184|UBQLNL;REV__nc|ENSG00000175518|Q8IYU4-2|UBQLNL 22.736283301280096 0.1690317064107932 2 T 1 -1 6.9897 0 0 0.64569 0 0 131.0978438604679 847.3468407214789 978.4446845819468 0 0 0 0 0 0 0 0 0 T 0.64569 + + 350 + NaN NaN 127279 NaN 18077 4303 22375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22384 90.123 NaN 1448900 35 0 539050 0.327 -1 0 96 633.3594977560446 632.3522212894445 1 633.3692626953125 MULTI HCD FTMS 0 0 0 22383 306406.875 0.1708431175158496 5 -0.11676025390625 1 NaN NaN 2 {I|L}S 2 -1 20.573 0 0 3.2534 0 0 0 429.2146090143188 429.2146090143188 5.880456295278407 0 0 0 0 0 0 0.5 0 {I|L}S 3.2534 - 51 + NaN NaN 306282.8 NaN 18078 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22385 90.127 NaN 395270 35 0 44050 0.261 + -1 KPQRRVAMATA 11 81 622.8491128717546 1243.6836728103092 2 622.849365234375 MULTI HCD FTMS 0 0 0 22383 37480.63671875 0.11915754367318626 3 -0.07137298583984375 2 Oxidation (M) _KPQRRVAM(Oxidation (M))ATA_ REV__ENST00000371075.7_3_20:57470717-57478626:+|nuORF 4.897010918128616 0.3974440401582579 2 [YN]{I|L} 3 -1 14.27 0 0 1.1474 0 0 0 850.471947306656 850.471947306656 7.587418566968159 0 0 0 0 0 1.0969100130080565 0 0 [YN]{I|L} 1.1474 - 111 NaN NaN 143908 NaN 18079 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22386 90.131 NaN 209210 35 0 31410 0.262 + 4928 FALSEIEVI 9 53 510.7842705527598 NaN 0 510.7843017578125 PEAK HCD FTMS 0 0 0 22383 87926.40625 0.2805685270886495 5 -0.11676025390625 3 Unmodified _FALSEIEVI_ ENSG00000242732|ENST00000609883|RTL5 25.399314129420986 0.1511568710901456 2 VE{I|L} 3 7 22.479 0 0 2.2048 0 0 131.09486129477233 544.2397554986936 675.334616793466 0 0 0 0 0 1.2302046884880937 0 0 0 VE{I|L} 2.2048 - 31 + NaN NaN 118265.7 NaN 18080 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22387 90.134 NaN 173190 35 0 10758 0.261 + 34081 YNLRQRKTV 9 75 589.3431414453358 1176.6717299574716 2 589.3431396484375 MULTI HCD FTMS 0 0 0 22383 81373.359375 0.418988730037898 -5 0.11553955078125 4 Unmodified _YNLRQRKTV_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 4.3292370932331545 0.3181982124262546 2 W 1 9 14.604 0 0 1.2411 0 0 972.5823267365716 0 972.5823267365716 0 0.9589312379109991 0 0 0 0 0 0 0 W 1.2411 - 76 + NaN NaN 113319.3 NaN 18081 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22388 90.138 NaN 463580 35 0 46288 0.261 + 20248 NYLPFIMEL 9 86 578.2915180423745 1154.568483151549 2 579.2854614257812 MULTI HCD FTMS 0 0 0 22383 24399.212890625 0.05988565616332867 -11 0.26810455322265625 5 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 41.8396318013385 0.056899836730939755 2 YP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PN 7 4 33.25 0 0 2.8799 0 0 0 273.1243990533813 273.1243990533813 11.7122791990414 0 0 0 0 1.055462187404089 0 0 0.3494850021680094 YP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}PN 2.8799 - 766 + NaN NaN 161181.4 NaN 18082 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22389 90.141 NaN 324750 35 0 25661 0.261 + 13673 KYPENFFLL 9 74 585.8135415137825 NaN 0 585.8136596679688 PEAK HCD FTMS 0 0 0 22383 33827.515625 0.32761856884702895 -11 0.26810455322265625 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 27.628801355627647 0.1361920736132224 2 {I|L}N{I|L} 3 7 17.039 0 0 1.4568 0 0 131.09527042815245 695.2875460260374 826.3828164541899 0 0 0 0 0 0.4247425010840047 0 0 0.3494850021680094 {I|L}N{I|L} 1.4568 - 51 + NaN NaN 152201 NaN 18083 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22390 90.144 NaN 147790 35 0 20619 0.261 + 22649 QWEDLTPLTF 10 50 625.3085913690268 1248.6026298048534 2 625.3096313476562 MULTI HCD FTMS 0 0 0 22383 24115.24609375 0.1466097181143076 6 -0.132843017578125 7 Unmodified _QWEDLTPLTF_ ENSG00000071553|ENST00000369762|ATP6AP1 9.5439744041441 0.42184090036563754 2 C(Carbamidomethyl (C))T[{I|L}P]T{M(Oxidation (M))|F} 6 5 33.901 0 0 2.7151 0 0 511.24864394355626 0 511.24864394355626 0 30.406075122407685 0 0 0 1 0 0 0 C(Carbamidomethyl (C))T[{I|L}P]T{M(Oxidation (M))|F} 2.7151 - 13 NaN NaN 131201.1 NaN 18084 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22391 90.148 NaN 161150 35 0 25137 0.261 + 5253 FFDPSLLHLL 10 43 601.3347834774651 NaN 0 601.3334350585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _FFDPSLLHLL_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 36.12702656103203 0.15814681568024677 2 YDP{[TV]|[{I|L}S]}{I|L} 6 5 28.148 0 0 2.3444 0 0 131.09264978630887 378.2154940240844 509.3081438103933 0 0 0 0 0 1.274227503252014 0 0 0 YDP{[TV]|[{I|L}S]}{I|L} 2.3444 - 27 + NaN NaN 113990.3 NaN 18085 4304 22383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22393 90.152 NaN 5669700 35 0 799270 0.327 -1 0 110 539.7753191711168 1077.5360854090336 2 539.7754516601562 MULTI HCD FTMS 0 0 0 22392 5379942.5 0.2783638169116415 5 -0.10356903076171875 1 NaN NaN 2 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 91.591 0 0 8.5001 0 0 0 279.0958540288039 279.0958540288039 53.64593550382132 0 0 0 0 2.4604093769761874 1.6989700043360187 0.7302046884880937 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.5001 - 3312 + NaN NaN 577397.6 NaN 18086 4305 22392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22394 90.157 NaN 3036000 35 0 1099600 0.261 + -1 WHNYMTEL 8 77 555.2398843727365 1108.4652158122728 2 555.2400512695312 MULTI HCD FTMS 0 0 0 22392 1672750 0.22729848329982907 6 -0.1330718994140625 2 Oxidation (M) _WHNYM(Oxidation (M))TEL_ REV__ENST00000526769.3_1_11:6735844-6741409:-|nuORF;REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1 10.823927491677226 0.514154816617796 2 HYE{I|L} 4 -1 31.414 0 0 2.834 0 0 548.2140980451187 0 548.2140980451187 0 20.612431371158735 0 0 0 0.9247425010840047 0 0 0 HYE{I|L} 2.834 - 374 NaN NaN 562333.1 NaN 18087 4305 22392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22395 90.16 NaN 441540 35 0 43766 0.261 + 7758 FYNDHIYQI 9 81 606.7887213669868 1211.5628898007735 2 606.78857421875 MULTI HCD FTMS 0 0 0 22392 172906.671875 0.5772703058221006 4 -0.08748626708984375 3 Unmodified _FYNDHIYQI_ REV__ENSG00000177000|ENST00000376590|MTHFR;REV__nc|ENSG00000177000|P42898-2|MTHFR 34.93206674587334 0.08860942999206235 2 [YV]A[C(Carbamidomethyl (C))S]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQ{I|L} 10 -1 + 40.123 0 0 3.3117 3.3117 80.806 0 0 0 4.5776150036119105 4.308845489566892 4.308845489566892 1.2057393120584976 0 0.6694451763165201 1.5228787452803376 0.7742275032520141 0.28872548999643577 [YV]A[C(Carbamidomethyl (C))S]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQ{I|L};[YV]A[CS]G{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V];[YV]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[WE]Q{I|L};[Y{M(Oxidation (M))|F}]V{NN|[MP]|[D{I|L}]|[EV]}[WE]Q{I|L};[YQ][MT]G{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQ{I|L};[YT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}G{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QQ{I|L};{I|L}EG{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V];[YV]{M(Oxidation (M))|F}{NN|[MP]|[D{I|L}]|[EV]}[{M(Oxidation (M))|F}V][Y{M(Oxidation (M))|F}];{I|L}EG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}M{I|L} 3.3117;3.2122;2.3479;2.3152;1.6163;1.4125;1.3747;1.192;0.33418;0.32383 -;-;-;-;-;-;-;-;-;- 821 NaN NaN 163189.5 NaN 18088 4305 22392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22396 90.164 NaN 300630 35 0 24650 0.261 -1 MPSQCMWL 8 58 563.7202574531179 NaN 0 563.7203979492188 PEAK HCD FTMS 0 0 0 22392 20067.58984375 0.050781574965118266 9 -0.204925537109375 4 Acetyl (Protein N-term),Carbamidomethyl (C),2 Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))PSQC(Carbamidomethyl (C))M(Oxidation (M))WL_ ENST00000368797.8_1_10:127500785-127500827:-|nuORF 2.0597508629832335 0.38822285293237185 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.97466 0 0 552.1676744747921 276.09809290103755 828.2657673758297 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.97466 - 21 + NaN NaN 141499.8 NaN 18089 4305 22392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22397 90.167 NaN 86861 35 0 6437.2 0.262 + 33459 YHFACVTI 8 41 477.2307447461959 NaN 0 477.2305908203125 PEAK HCD FTMS 0 0 0 22392 53159.6484375 0.6247614484761304 -1 0.02927398681640625 5 Unmodified _YHFACVTI_ REV__ENSG00000144891|ENST00000349243|AGTR1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111849.8 NaN 18090 4305 22392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22399 90.172 NaN 930860 35 0 35945 0.327 -1 0 113 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22398 1113944.375 0.5932747036990115 6 -0.136566162109375 1 NaN NaN 2 A[RV]QD 5 -1 15.558 0 0 1.257 0 0 193.13089951724152 472.2761629693969 665.4070624866384 0 0 0 0 0 1.013879331962458 0 0.5994850021680094 0.4247425010840047 A[RV]QD 1.257 - 599 + NaN NaN 237785.8 NaN 18091 4306 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22400 90.176 NaN 333900 35 0 12738 0.261 + 23648 RPVKSILNNKN 11 105 641.8826645353555 1281.750776137511 2 641.8825073242188 MULTI HCD FTMS 0 0 0 22398 248627.0625 0.7055978561922616 6 -0.136566162109375 2 Unmodified _RPVKSILNNKN_ REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1 5.296884461304476 0.39569033063702824 2 D 1 -1 8.8735 0 0 0.69229 0 0 193.13331804675323 970.5477999322874 1163.6811179790407 0 0 0 0 0 0.28872548999643577 0 0.28872548999643577 0 D 0.69229 - 209 + NaN NaN 152200.5 NaN 18092 4306 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22401 90.18 NaN 984880 35 0 190970 0.261 + 20249 NYLPFIMEL 9 71 578.2915180423745 1154.568483151549 2 578.2913818359375 MULTI HCD FTMS 0 0 0 22398 320097.96875 0.1981556389016159 -9 0.20957183837890625 3 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 139.13845188893973 5.0762478717762276E-05 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 107.03 0 0 9.2702 9.2702 96.912 0 0 0 29.488474775526186 77.23985343418364 29.488474775526186 25.052725051033065 0 2.610924374808178 1.3010299956639813 0 1.6307196863200843 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}{I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}E{I|L};[YN]{I|L}{I|L}M{I|L}[EP]Y;[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9.2702;7.1003;5.6878;5.0847 +;-;-;- + 2099 NaN NaN 239668.8 NaN 18093 4306 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22402 90.183 NaN 208340 35 0 22152 0.262 + 28232 TLGVRRQN 8 61 472.2756148564919 NaN 0 472.2875061035156 PEAK HCD FTMS 0 0 0 22398 20063.50390625 0.5232759551651558 -2 0.048675537109375 4 Unmodified _TLGVRRQN_ REV__ENST00000261396.5_1_1:229577072-229577156:-|nuORF 4.75600775471527 0.38822285293237185 2 P 1 -1 0.088644 0 0 0.0094048 0 0 700.3929217522433 142.06342493228752 842.4563466845308 0 0 0 0 0 0 0 0 0 P 0.0094048 - 1 + NaN NaN 132026.3 NaN 18094 4306 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22403 90.186 NaN 156080 35 0 16730 0.261 + 1995 DASSLEYLF 9 48 522.7484558686759 NaN 0 522.748291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _DASSLEYLF_ ENSG00000162434|ENST00000342505|JAK1 26.88365393820708 0.14119366324382274 2 EY{I|L} 3 6 27.351 0 0 2.6212 0 0 473.2156484543455 162.05599390201408 635.2716423563596 0 0 0 0 0 1.6549471895720984 0 0 0 + EY{I|L} 2.6212 + + 30 + NaN NaN 104344.8 NaN 18095 4306 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22404 90.19 NaN 94834 35 0 12383 0.261 + 14492 LFAPPGALYA 10 49 510.28120948120244 NaN 0 510.28204345703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LFAPPGALYA_ ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 12.531546534597751 0.32945902202414107 2 VA 2 9 9.464 0 0 0.92916 0 0 130.0871249176799 715.3284395807249 845.4155644984048 0 0 0 0 0 0 0 0 0 VA 0.92916 - 20 + NaN NaN 97573.4 NaN 18096 4306 22398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22406 90.194 NaN 26496000 35 0 4896900 0.327 + 27639 TAISLFYEL 9 82 528.7843208890033 1055.5540888448065 2 528.7847900390625 MULTI HCD FTMS 0 0 0 22405 21282956 0.21239835735084062 8 -0.188934326171875 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 94.619 0 0 8.964 8.964 97.708 0 0 0 5.6424927368725974 48.566147098514705 5.6424927368725974 43.79493455131808 0 2.6549471895720984 0 1.947621246364342 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L};[TA]{I|L}Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}E{I|L};[YT][{I|L}A][{I|L}A]YE{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}{I|L}[TA];[YE]{M(Oxidation (M))|F}{I|L}S{I|L}{I|L}[TA];[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}[TA]{I|L} 8.964;4.815;3.7641;3.554;3.3184;3.0107;2.9514;2.7413;2.5691;2.5199 +;-;-;-;-;-;-;-;-;- + 1030 NaN NaN 738350.3 NaN 18097 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22407 90.199 NaN 1921400 35 0 142140 0.261 -1 0 105 611.3564756461734 1220.6983983591467 2 611.3562622070312 MULTI HCD FTMS 0 0 0 22405 2664704 0.7291094962969641 18 -0.44004058837890625 2 NaN NaN 2 {[HG]|PP}N{[HG]|PP}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K 8 -1 15.314 0 0 1.2545 0 0 0 327.14487854528454 327.14487854528454 7.087039305856122 0 0 0 0 1.4436726795685342 0 0.6747425010840047 0 {[HG]|PP}N{[HG]|PP}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}K 1.2545 - 129 + NaN NaN 391164 NaN 18098 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22408 90.202 NaN 2567600 35 0 557120 0.261 + 7871 FYTFPFQQL 9 104 595.7980501877404 1189.5815474422807 2 595.7979125976562 MULTI HCD FTMS 0 0 0 22405 1212073 0.30426274166266437 7 -0.1628265380859375 3 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 189.77610602135977 4.071947121966932E-13 2 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 94.351 0 0 7.9315 7.9315 91.95 0 0 0 5.509074688805811 56.81864960820954 5.509074688805811 9.208187539523749 0 2.5356668758921828 0 2.341129063296272 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}VQ{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YT]P{M(Oxidation (M))|F}QQ{I|L} 7.9315;7.1574;7.1574;6.9352;6.387;6.1612;6.1612;5.5296;5.3908;4.815 +;-;-;-;-;-;-;-;-;- + 10210 NaN NaN 484690.7 NaN 18099 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22409 90.206 NaN 531690 35 0 57337 0.261 + 7720 FYLMQIVEI 9 69 586.3061258889848 1170.5976988447694 2 586.8084716796875 MULTI HCD FTMS 0 0 0 22405 161770.328125 0.9754967393464258 1 -0.02597808837890625 4 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 60.07390631473393 0.0174780869009295 2 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 5 70.298 0 0 6.0053 0 0 244.17927748847814 0 244.17927748847814 0 47.1099511878171 0 0 0 2.6549471895720984 0 0.3807196863200844 0 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 6.0053 - 1518 NaN NaN 182703.6 NaN 18100 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22410 90.209 NaN 344730 35 0 42695 0.261 + 10729 IQQALFFNF 9 57 564.2980265171639 1126.5815001011276 2 564.2982177734375 MULTI HCD FTMS 0 0 0 22405 74713.1484375 0.25158745592548665 6 -0.1366729736328125 5 Unmodified _IQQALFFNF_ ENSG00000104635|ENST00000381237|SLC39A14;nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 4 5 20.177 0 0 1.791 0 0 553.3236850053609 0 553.3236850053609 0 15.573193899842437 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 1.791 + + 49 + NaN NaN 143847.9 NaN 18101 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22411 90.212 NaN 112550 35 0 18549 0.261 + -1 YFQEHCFKN 9 44 636.7752776355421 NaN 0 636.7644653320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _YFQEHC(Carbamidomethyl (C))FKN_ REV__ENSG00000091656|ENST00000651372|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-2|ZFHX4;REV__nc|ENSG00000091656|Q86UP3-4|ZFHX4;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant 10.073929032068715 0.24642998803896465 2 Q 1 -1 15.044 0 0 1.1832 0 0 310.1353808552654 830.3213595025999 1140.4567403578653 0 0 0 0 0 0.805462187404089 0 0 0 Q 1.1832 + + 3 + NaN NaN 104078.9 NaN 18102 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22412 90.216 NaN 213540 35 0 17274 0.262 + 6756 FPQKMYQF 8 81 544.7674535747158 NaN 0 544.7603149414062 PEAK HCD FTMS 0 0 0 22405 15853.4033203125 0.9153318780990778 -2 0.0420989990234375 7 Unmodified _FPQKMYQF_ ENSG00000149654|ENST00000537909|CDH22 32.116972079565 0.3772972708913157 2 PQDD{I|L}S{I|L} 7 6 31.929 0 0 2.936 0 0 147.0690525366378 169.06185327701408 316.1309058136519 0 0 0 0 0 0.2302046884880938 0 1.055462187404089 0.2742275032520141 PQDD{I|L}S{I|L} 2.936 - 431 + NaN NaN 123527.8 NaN 18103 4307 22405 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22414 90.22 NaN 1499600 35 0 308690 0.327 + -1 LFGHACDKF 9 78 547.7577992135698 1093.5010454939395 2 547.7576293945312 MULTI HCD FTMS 0 0 0 22413 661985.1875 0.1496530689569072 9 -0.215362548828125 1 Carbamidomethyl (C) _LFGHAC(Carbamidomethyl (C))DKF_ REV__TF|p.S317C|1|0.1|ENSG00000091513|chr3:133757848-133757848|C/G|missense_variant 20.453626601364224 0.18364154288633264 2 [YT]V 3 -1 25.062 0 0 2.2919 0 0 0 727.300458906302 727.300458906302 2.6709779556855295 0 0 0 0 0 2 0 0 [YT]V 2.2919 - 137 NaN NaN 315662.6 NaN 18104 4308 22413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22415 90.225 NaN 1919300 35 0 275390 0.261 -1 FPTVTLLSPG 10 96 537.2975915189766 1072.580630104753 2 537.2974853515625 MULTI HCD FTMS 0 0 0 22413 558388.25 0.1703585972913664 8 -0.17581939697265625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FPTVTLLSPG_ ENST00000369486.7_1_1:117150701-117150863:-|nuORF 10.823927491677226 0.4098686510432541 2 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 -1 46.604 0 0 4.345 0 0 148.12140922252235 0 148.12140922252235 0 8.36188426947686 0 0 0 0 0 2.0228787452803374 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 4.345 - 2314 + NaN NaN 379047.3 NaN 18105 4308 22413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22416 90.228 NaN 390710 35 0 36156 0.261 + 33172 YERDIYIE 8 73 550.7664650779053 1099.5183772226105 2 550.7661743164062 MULTI HCD FTMS 0 0 0 22413 133020.5625 0.10040683959259995 9 -0.215362548828125 3 Unmodified _YERDIYIE_ REV__tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1 8.593279151180031 0.5292430274356741 2 EY 2 -1 10.969 0 0 0.99763 0 0 151.10229789312956 653.2882174127561 804.3905153058856 0 0 0 0 0 0 0 0 0 EY 0.99763 - 173 + NaN NaN 152689.5 NaN 18106 4308 22413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22417 90.232 NaN 548440 35 0 101560 0.261 + 4581 EYLPIGGLAEF 11 70 604.8137478809075 1207.612942828615 2 604.8135375976562 MULTI HCD FTMS 0 0 0 22413 206914.265625 0.3421269717784343 -7 0.158477783203125 4 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 80.6760300276096 0.0049813072016983324 2 [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F} 11 0 + 97.555 0 0 8.0783 8.0783 90.39 0 0 0 29.89841998993849 89.76844526410683 29.89841998993849 6.818048224298067 0 2.031234684152075 1.5228787452803376 0.7302046884880937 0 + + [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}N{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G[Q{I|L}]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]{I|L}SG{I|L}AE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]{I|L}S[Q{I|L}]E{M(Oxidation (M))|F};[YT]TR[HA][KC][KT] 8.0783;7.5137;5.7504;3.5672;1.2392;0.40409 +;-;-;-;-;- + 329 NaN NaN 178257.1 NaN 18107 4308 22413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22418 90.235 NaN 103950 35 0 7466.8 0.263 + 15120 LMKPLLVF 8 63 480.8012458812737 959.5879388293474 2 480.8012390136719 MULTI HCD FTMS 0 0 0 22413 67834.1875 0.054385584260181634 14 -0.33971405029296875 5 Unmodified _LMKPLLVF_ DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000149091|ENST00000456247|DGKZ;ENSG00000157680|ENST00000614521|DGKI;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000157680|O75912|DGKI 2.577480529830294 0.5381683276125971 2 D 1 8 9.2917 0 0 0.96831 0 0 61.05470848523857 780.4622896783811 841.5169981636197 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.96831 - 16 + NaN NaN 106218.8 NaN 18108 4308 22413 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22420 90.24 NaN 518860 35 0 100420 0.327 + 32221 VYTLDIPVL 9 50 516.80263878748 1031.5907246417598 2 516.8026123046875 MULTI HCD FTMS 0 0 0 22419 354285.84375 1 0 0 1 Unmodified _VYTLDIPVL_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 88.90359156742426 0.00455469703666567 2 {I|L}D{I|L}PV{I|L} 6 3 66.943 0 0 6.4893 0 0 363.17732436347814 0 363.17732436347814 0 55.8508472254281 0 0 0 2.079689690656103 0 1.1989700043360187 0 + {I|L}D{I|L}PV{I|L} 6.4893 + + 115 NaN NaN 182493.5 NaN 18109 4309 22419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22421 90.244 NaN 216550 35 0 11211 0.262 -1 0 68 407.90650160105304 1220.6976754033592 3 407.9064025878906 MULTI HCD FTMS 0 0 0 22419 203693.8125 0.6035540993831494 12 -0.29413604736328125 2 NaN NaN 2 [{M(Oxidation (M))|F}E]{I|L} 3 -1 13.116 0 0 1.0745 0 0 0 828.5131715793935 828.5131715793935 5.642040441009046 0 0 0 0 0 0 0.6549471895720985 0 [{M(Oxidation (M))|F}E]{I|L} 1.0745 - 19 NaN NaN 131593.7 NaN 18110 4309 22419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22422 90.248 NaN 545310 35 0 50562 0.261 + 26145 SPMDIFDMF 9 86 567.7280089614021 1133.4414649896041 2 567.7286376953125 MULTI HCD FTMS 0 0 0 22419 205572.703125 1 0 0 3 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 46.020951573049366 0.037705236580089195 2 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 4 {[{M(Oxidation (M))|F}D]|MM}PS + + 56.498 13.857 3.1059 4.9846 4.9846 62.298 0 0 0 0 38.53917193908117 0 0 0 1.774227503252014 0 0.3807196863200844 0 {[{M(Oxidation (M))|F}D]|MM}PS{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9846 - 582 + NaN NaN 180935.6 NaN 18111 4309 22419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22423 90.251 NaN 148340 35 0 8136.9 0.263 + 7099 FRKLLCRFLN 10 52 437.2574313284546 1308.7504645855638 3 437.591796875 MULTI HCD FTMS 0 0 0 22419 121931.15625 0.969585620361761 5 -0.11743927001953125 4 Unmodified _FRKLLCRFLN_ ENST00000333957.8_1_12:22602190-22602310:-|nuORF 0.6976657623105312 0.47161084886498755 2 K 1 9 2.4743 0 0 0.18905 0 0 872.5225725951326 305.10053430728755 1177.6231069024202 0 0 0 0 0 0 0 0 0 + K 0.18905 + + 6 + NaN NaN 108168 NaN 18112 4309 22419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22425 90.256 NaN 574090 35 0 92468 0.327 -1 MLEAMAEPSPE 11 79 631.7697570339784 NaN 0 631.7833862304688 PEAK HCD FTMS 0 0 0 22424 10406.990234375 0.9017523687931932 -1 0.016082763671875 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MLEAM(Oxidation (M))AEPSPE_ ENSG00000040633|ENST00000320316|PHF23;ENST00000576955.5_1_17:7140770-7142712:-|nuORF;nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-3|PHF23 8.745405648335112 0.31731194618894887 2 {I|L}{I|L}{M(Oxidation (M))|F}E 4 -1 12.511 0 0 0.99177 0 0 387.0666659696381 369.1558931940063 756.2225591636444 0 0 0 0 0 0 0 0.3494850021680094 0 {I|L}{I|L}{M(Oxidation (M))|F}E 0.99177 - 80 + NaN NaN 175450.1 NaN 18113 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22426 90.26 NaN 1238700 35 0 391050 0.261 -1 0 96 633.3701304835428 632.3628540169427 1 633.3693237304688 MULTI HCD FTMS 0 0 0 22424 273625.6875 0.5963691183192404 4 -0.10135650634765625 2 NaN NaN 2 {I|L}S 2 -1 19.068 0 0 3.0154 0 0 0 429.21225916080317 429.21225916080317 2.6278813061184536 0 0 0 0 0 0 0.5 0 {I|L}S 3.0154 - 15 + NaN NaN 284572.4 NaN 18114 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22427 90.264 NaN 277800 35 0 11654 0.261 + 5448 FIHEVAKGVMI 11 79 622.3475807826734 1242.6806086321467 2 622.3482055664062 MULTI HCD FTMS 0 0 0 22424 160135.234375 0.5393456673228777 16 -0.40807342529296875 3 Unmodified _FIHEVAKGVMI_ REV__ENSG00000204271|ENST00000374919|SPIN3 6.2057823575117 0.391704213221645 2 [YN]{I|L} 3 -1 18.161 0 0 1.4614 0 0 0 849.4675583761863 849.4675583761863 11.962724883926658 0 0 0 0 0 1.3979400086720375 0 0 [YN]{I|L} 1.4614 - 77 NaN NaN 135849.1 NaN 18115 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22428 90.267 NaN 543910 35 0 83106 0.263 + 779 ASSFVFLNL 9 60 499.27138872644673 996.5282245196935 2 499.2715148925781 MULTI HCD FTMS 0 0 0 22424 76888.9375 0.35606317036459034 1 -0.02950286865234375 4 Unmodified _ASSFVFLNL_ ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 49.93300154707207 0.03166451819912738 2 {I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}N{I|L} 6 4 41.86 0 0 4.2006 0 0 245.1373005597672 0 245.1373005597672 0 16.075764586226843 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}N{I|L} 4.2006 - 182 NaN NaN 165062.3 NaN 18116 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22429 90.271 NaN 243020 35 0 33615 0.261 + 15058 LLTGQLLLL 9 41 492.3287412041687 982.6429294751374 2 492.3287048339844 MULTI HCD FTMS 0 0 0 22424 51626.51953125 0.13499456401389456 -5 0.10356903076171875 5 Unmodified _LLTGQLLLL_ REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF 43.85829265575387 0.04763305254408404 2 {I|L}{I|L}{I|L}{I|L} 4 -1 45.433 0 0 4.6236 0 0 512.2964174516922 0 512.2964174516922 0 19.402281476392034 0 0 0 1.5 0 0 0 {I|L}{I|L}{I|L}{I|L} 4.6236 + + 34 NaN NaN 134918.2 NaN 18117 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22430 90.274 NaN 377000 35 0 42899 0.261 + 28022 TFTLSMGLPFA 11 73 592.8037453585731 1183.5929377839461 2 592.8034057617188 MULTI HCD FTMS 0 0 0 22424 76680.21875 0.6952382213896579 2 -0.052398681640625 6 Unmodified _TFTLSMGLPFA_ REV__ENSG00000143552|ENST00000368559|NUP210L;REV__nc|ENSG00000143552|Q5VU65-2|NUP210L 19.256988751693697 0.28929563740265996 2 {[CT]|[{M(Oxidation (M))|F}G]}SY[VP]S{I|L}AP{M(Oxidation (M))|F} 11 -1 + 64.389 0 0 5.4401 5.4401 85.565 0 0 0 3.565473235138114 3.565473235138114 3.565473235138114 6.2932569876205235 0 1.8494850021680094 0 0.7134679910804405 0 {[CT]|[{M(Oxidation (M))|F}G]}SY[VP]S{I|L}AP{M(Oxidation (M))|F};[YV]A{I|L}{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}AP{M(Oxidation (M))|F};[YV]A{I|L}S{[CT]|[{M(Oxidation (M))|F}G]}{I|L}AP{M(Oxidation (M))|F};[YQ]Y[VP]S{I|L}AP{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[YV][PS]S{I|L}AP{M(Oxidation (M))|F};[YV]A{I|L}S[VP]C[VS]{M(Oxidation (M))|F};[YV]A{I|L}K[{M(Oxidation (M))|F}E]AP{M(Oxidation (M))|F};[YV]A{I|L}{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}PA{M(Oxidation (M))|F};[YV]A{I|L}S{[CT]|[{M(Oxidation (M))|F}G]}{I|L}PA{M(Oxidation (M))|F};[YV]A{I|L}KEEW{M(Oxidation (M))|F} 5.4401;4.9084;4.9084;4.8846;4.2111;4.0561;3.7058;3.6615;3.6615;3.3856 -;-;-;-;-;-;-;-;-;- 702 NaN NaN 143926 NaN 18118 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22431 90.277 NaN 84629 35 0 9908.5 0.261 + -1 RCLWHYRQG 9 44 638.3132633085064 1274.6119736838127 2 638.3139038085938 MULTI HCD FTMS 0 0 0 22424 34235.26171875 0.4115828453857987 1 -0.02950286865234375 7 Carbamidomethyl (C) _RC(Carbamidomethyl (C))LWHYRQG_ REV__ENST00000286063.10_1_2:178936265-178936322:-|nuORF 1.844237919475145 0.33703635659052655 2 T 1 -1 0.48455 0 0 0.038015 0 0 654.8207882363503 515.7201021783811 1170.5408904147314 0 0 0 0 0 0 0 0 0 T 0.038015 - 2 + NaN NaN 112222.5 NaN 18119 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22432 90.281 NaN 54250 35 0 4060.6 0.264 + -1 CYVALAWA 8 33 477.2307447461959 NaN 0 477.2305908203125 PEAK HCD FTMS 0 0 0 22424 41150.21484375 0.4836199746714175 4 -0.10135650634765625 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))YVALAWA_ REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94214.2 NaN 18120 4310 22424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22434 90.286 NaN 14354000 35 0 2341400 0.327 + 27640 TAISLFYEL 9 90 528.7843208890033 1055.5540888448065 2 528.7833862304688 MULTI HCD FTMS 0 0 0 22433 7130795 0.07116347675602898 12 -0.29087066650390625 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 93.427 0 0 8.8509 8.8509 96.436 0 0 0 5.6424927368725974 57.682824411552645 5.6424927368725974 24.425386543820935 0 2.610924374808178 0 1.872363747448347 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}YE{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L};[TA]{I|L}S{I|L}[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[TV]|[{I|L}S]}[TA][Y{M(Oxidation (M))|F}]{I|L}E{I|L} 8.8509;6.537;5.0288;4.6686;4.1098;3.0495;2.9914;2.8827;2.7521;2.7149 +;-;-;-;-;-;-;-;-;- + 2063 NaN NaN 775549.4 NaN 18121 4311 22433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22435 90.29 NaN 627020 35 0 151610 0.261 -1 0 87 633.3701304835428 632.3628540169427 1 633.3712768554688 MULTI HCD FTMS 0 0 0 22433 264872.03125 0.5772904627018572 5 -0.1108245849609375 2 NaN NaN 2 T{I|L} 2 -1 19.776 0 0 3.1274 0 0 400.20894057441564 0 400.20894057441564 0 8.182503180159344 0 0 0 0 0 0.3807196863200844 0 T{I|L} 3.1274 - 23 NaN NaN 185532.5 NaN 18122 4311 22433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22436 90.294 NaN 492680 35 0 65231 0.261 + 34082 YNLRQRKTV 9 103 589.3431414453358 1176.6717299574716 2 589.3430786132812 MULTI HCD FTMS 0 0 0 22433 143139.6875 0.7370215061082033 2 -0.0457000732421875 3 Unmodified _YNLRQRKTV_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 12.531546534597751 0.2520865569484384 2 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E 8 6 33.764 0 0 2.8695 0 0 0 128.1908699323341 128.1908699323341 20.564542569568673 0 0 0 0 0 1.6989700043360187 0 0.6139829889124311 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E 2.8695 - 271 NaN NaN 165695.6 NaN 18123 4311 22433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22437 90.297 NaN 602090 35 0 68425 0.261 + 7721 FYLMQIVEI 9 75 586.3061258889848 1170.5976988447694 2 586.3056640625 MULTI HCD FTMS 0 0 0 22433 161835.53125 0.6143814072741755 2 -0.0457000732421875 4 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 78.7280429016045 0.006263961847259105 2 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 7 5 69.69 0 0 5.9534 0 0 244.17828566718907 0 244.17828566718907 0 55.08584992258362 0 0 0 2.1549471895720984 0 0.3807196863200844 0.6382104921644451 D{I|L}Q{M(Oxidation (M))|F}YE{I|L} 5.9534 - 845 NaN NaN 177142.2 NaN 18124 4311 22433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22438 90.3 NaN 227270 35 0 36166 0.264 -1 0 46 405.11861942977845 808.2226859263569 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22433 44701.16796875 0.01635880845067742 -11 0.23944854736328125 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.7296 0 0 643.1435671292851 0 643.1435671292851 0 10.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7296 - 11 + NaN NaN 127986.8 NaN 18125 4311 22433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22439 90.304 NaN 222210 35 0 32287 0.261 + -1 EMLVWEALGG 10 61 560.7699389573114 1119.5253249814227 2 560.769775390625 MULTI HCD FTMS 0 0 0 22433 81763.703125 0.3848201396048209 -4 0.090972900390625 6 Oxidation (M) _EM(Oxidation (M))LVWEALGG_ REV__ENSG00000168802|ENST00000448552|CHTF8 30.636539890814138 0.2266618088935899 2 EAN{I|L} 4 -1 45.42 0 0 4.057 0 0 674.3056085213656 0 674.3056085213656 0 9.92992819099939 0 0 0 1.5 0 0 0.3252574989159953 EAN{I|L} 4.057 - 318 NaN NaN 128637.2 NaN 18126 4311 22433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22441 90.308 NaN 2943900 35 0 347220 0.327 -1 0 115 539.7753191711168 1077.5360854090336 2 539.775634765625 MULTI HCD FTMS 0 0 0 22440 1886716.875 0.09762069218334665 12 -0.303314208984375 1 NaN NaN 2 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 85.864 0 0 7.9686 0 0 0 279.09589908663287 279.09589908663287 41.919175938496025 0 0 0 0 2.309894379144197 1.5228787452803376 0.7059771852360797 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7.9686 - 4814 + NaN NaN 538441.9 NaN 18127 4312 22440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22442 90.313 NaN 860830 35 0 37591 0.261 -1 0 110 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22440 1101744.875 0.5867773821897789 12 -0.303314208984375 2 NaN NaN 2 D 1 -1 9.6041 0 0 0.77595 0 0 105.08000821585763 1014.5670165937036 1119.6470248095611 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 D 0.77595 - 229 + NaN NaN 219147.5 NaN 18128 4312 22440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22443 90.316 NaN 1773600 35 0 270500 0.261 + 29924 VFDWIEANL 9 81 553.7796652649234 1105.5447775966468 2 553.7796630859375 MULTI HCD FTMS 0 0 0 22440 1076381.625 0.640259596864227 -3 0.0684814453125 3 Unmodified _VFDWIEANL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 137.42381684818497 0.00015474832393368816 2 [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L} 9 0 + 79.559 0 0 7.1964 7.1964 92.393 0 0 0 4.381382081021627 4.381382081021627 4.381382081021627 13.015384402724592 0 2.6549471895720984 0 0.8901668265424344 0.3807196863200844 + + [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}EAGG{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAN{I|L};[{M(Oxidation (M))|F}V][WE]VEAN{I|L};[WD]{M(Oxidation (M))|F}{I|L}VEAN{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}{[RE]|[WV]}{M(Oxidation (M))|F}EAN{I|L};[WD][{I|L}V]{M(Oxidation (M))|F}EAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}[QA]D{I|L};[{M(Oxidation (M))|F}V][WE]VEAGG{I|L} 7.1964;6.0191;5.8177;5.1458;5.1037;4.6404;4.5784;4.1783;4.0575;3.9685 +;-;-;-;-;-;-;-;-;- + 4027 NaN NaN 356577.4 NaN 18129 4312 22440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22444 90.32 NaN 122150 35 0 4269.5 0.261 + 12435 KPTRSLKRPEA 11 61 641.8826645353555 1281.750776137511 2 641.8826904296875 MULTI HCD FTMS 0 0 0 22440 111083.9375 0.31525364684463975 12 -0.303314208984375 4 Unmodified _KPTRSLKRPEA_ REV__ENSG00000173253|ENST00000358146|DMRT2;REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2 2.498486711656943 0.4079631525365919 2 {I|L} 1 -1 5.4846 0 0 0.4279 0 0 131.23075081633584 1034.4114932087446 1165.6422440250803 0 0 0 0 0 0 0 0 0 {I|L} 0.4279 + + 11 + NaN NaN 111144.4 NaN 18130 4312 22440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22445 90.323 NaN 354780 35 0 53457 0.263 + 22403 QPSPILEFL 9 61 522.2928448585137 1042.5711367838273 2 522.2927856445312 MULTI HCD FTMS 0 0 0 22440 109604.359375 0.5061896878777429 -3 0.0684814453125 5 Unmodified _QPSPILEFL_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 43.85829265575387 0.04763305254408404 2 E{M(Oxidation (M))|F}{I|L} 3 6 44.253 0 0 4.2446 0 0 635.3625663406755 0 635.3625663406755 0 28.767959391884546 0 0 0 1 0 0.805462187404089 0 + E{M(Oxidation (M))|F}{I|L} 4.2446 + + 73 NaN NaN 139566.8 NaN 18131 4312 22440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22446 90.326 NaN 68879 35 0 17024 0.261 + 21311 PSGPHHHH 8 33 453.20983319822926 NaN 0 453.20941162109375 PEAK HCD FTMS 0 0 0 22440 7465.36083984375 0.2100190471114491 2 -0.04895782470703125 6 Unmodified _PSGPHHHH_ REV__ENST00000306353.7_2_2:85829070-85829145:-|nuORF 0.7936320650641473 0.38822285293237185 2 S 1 -1 5.4846 0 0 0.60643 0 0 112.04056375798355 702.3106173150999 814.3511810730835 0 0 0 0 0 0 0 0 0 S 0.60643 + + 1 + NaN NaN 110857.1 NaN 18132 4312 22440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22448 90.331 NaN 1800600 35 0 79117 0.327 -1 0 107 611.3564756461734 1220.6983983591467 2 611.3562622070312 MULTI HCD FTMS 0 0 0 22447 2290506.25 0.6267224645598717 24 -0.5878143310546875 1 NaN NaN 2 {[HG]|PP}N 3 -1 9.9215 0 0 0.81277 0 0 0 909.4914231404077 909.4914231404077 1.416958439381304 0 0 0 0 0.6989700043360187 0 0 0 {[HG]|PP}N 0.81277 - 169 + NaN NaN 353232.1 NaN 18133 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22449 90.336 NaN 2699300 35 0 592850 0.261 + 20250 NYLPFIMEL 9 90 578.2915180423745 1154.568483151549 2 578.29150390625 MULTI HCD FTMS 0 0 0 22447 1430568.75 0.8855890768564461 -2 0.0457000732421875 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 166.44778350782605 5.759113011535275E-09 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 108.78 0 0 9.422 9.422 98.226 0 0 0 28.696662315049934 77.8487179211534 28.696662315049934 47.07834387816234 0 2.6237125054200234 1.2218487496163564 0 1.872363747448347 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};[PS]{M(Oxidation (M))|F}[VG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YN{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}YN{I|L};[MT]V[VG]{M(Oxidation (M))|F}{I|L}[EP]Y;{[QN]|[E{I|L}]|[KN]}M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}NY;{[QN]|[E{I|L}]|[KN]}M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}YN 9.422;5.3444;4.8732;4.5604;3.5348;1.7283;1.5758;1.1552;1.0311;0.94721 +;-;-;-;-;-;-;-;-;- + 1323 NaN NaN 506410.9 NaN 18134 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22450 90.339 NaN 648880 35 0 78866 0.261 + 32356 VYVLTNLAYF 10 68 601.8265663600953 1201.6385797869905 2 601.8257446289062 MULTI HCD FTMS 0 0 0 22447 227937.609375 0.22117696228658662 -5 0.11069488525390625 3 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 133.0521902211835 1.3591993275007461E-05 2 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 0 + 121.37 0 0 10.1 10.1 92.26 0 0 0 19.744237387763093 99.4837474453962 19.744237387763093 6.505149978319906 0 3.1989700043360187 1.3979400086720375 1.3737125054200234 1.1307196863200843 + + [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}A{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}A{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F};[YV]VVV{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}[SG]A{I|L}AY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F} 10.1;9.5589;8.3966;7.8552;6.7289;5.8955;5.7746;5.6291;5.4091;4.7958 +;-;-;-;-;-;-;-;-;- + 1926 NaN NaN 194609.4 NaN 18135 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22451 90.343 NaN 359560 35 0 47506 0.261 + 9962 IEGSEPPTIW 10 63 564.7846231210527 1127.5546933089054 2 564.770751953125 MULTI HCD FTMS 0 0 0 22447 25350.296875 0.47499905398007963 -2 0.0457000732421875 4 Unmodified _IEGSEPPTIW_ CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;CSMD3|p.L722Cfs*24|1|0.53|ENSG00000164796|chr8:112685724-112685724|G/-|frameshift_variant;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-5|CSMD3 6.723162845929126 0.4397169348982109 2 AE{I|L}WDD{I|L} 7 8 43.32 0 0 3.842 0 0 267.1187000959 0 267.1187000959 0 24.56022414822435 0 0 0 0 0 0 0 AE{I|L}WDD{I|L} 3.842 - 333 NaN NaN 146983.9 NaN 18136 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22452 90.346 NaN 287940 35 0 23576 0.261 + 647 APIRRIPERS 10 80 597.856669126769 1193.698785320338 2 597.8561401367188 MULTI HCD FTMS 0 0 0 22447 108165.7109375 0.9887103778301448 -2 0.0457000732421875 5 Unmodified _APIRRIPERS_ REV__ENST00000341048.8_1_5:55407235-55422869:-|nuORF;REV__ENST00000434982.2_1_5:55407235-55412649:-|nuORF 2.9952420565917617 0.4594494122822477 2 W 1 -1 13.099 0 0 1.0973 0 0 989.6093668406489 0 989.6093668406489 0 2.614393726401687 0 0 0 0 0 0 0 W 1.0973 - 235 + NaN NaN 135990.1 NaN 18137 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22453 90.349 NaN 95542 35 0 12625 0.263 + 8135 GNKKKLQQ 8 41 472.28799803936454 942.5614431455291 2 472.2882385253906 MULTI HCD FTMS 0 0 0 22447 58507.59765625 0.028089454088738305 19 -0.4466552734375 6 Unmodified _GNKKKLQQ_ REV__ENSG00000163632|ENST00000295896|C3orf49 0.6903765706972694 0.5409681170271811 2 W 1 -1 1.5938 0 0 0.16909 0 0 602.3831117019729 151.06849085025627 753.4516025522291 0 0 0 0 0 0 0 0 0 W 0.16909 - 6 + NaN NaN 111512.4 NaN 18138 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22454 90.352 NaN 218670 35 0 40721 0.261 + 29720 VDINNLTNF 9 53 525.2670456416515 1048.519538350103 2 525.7799072265625 MULTI HCD FTMS 0 0 0 22447 9885.1142578125 1 0 0 7 Unmodified _VDINNLTNF_ REV__ENSG00000116711|ENST00000367466|PLA2G4A 6.723162845929126 0.3000504726104499 2 {I|L}{[QS]|[NT]}{M(Oxidation (M))|F} 4 -1 18.94 0 0 1.8064 0 0 555.2665303928749 0 555.2665303928749 0 13.455612550363796 0 0 0 0 0 0.4247425010840047 0 {I|L}{[QS]|[NT]}{M(Oxidation (M))|F} 1.8064 + + 12 + NaN NaN 139174.6 NaN 18139 4313 22447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22456 90.357 NaN 1157100 35 0 200870 0.327 + 7872 FYTFPFQQL 9 106 595.7980501877404 1189.5815474422807 2 595.7979125976562 MULTI HCD FTMS 0 0 0 22455 323809.875 0.08128493939304368 14 -0.3458251953125 1 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 134.295615338601 0.00034446139420701925 2 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 76.001 0 0 6.3889 6.3889 87.339 0 0 0 3.2568864632742844 31.310807844809844 3.2568864632742844 6.734389726986834 0 2.2931576817365436 0 1.9247425010840047 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QVAA;{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[YT]P{M(Oxidation (M))|F}QQ{I|L};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L} 6.3889;5.8228;5.6149;5.6149;5.0487;5.0487;4.8445;4.5619;4.3265;4.2783 +;-;-;-;-;-;-;-;-;- + 5287 NaN NaN 278312.4 NaN 18140 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22457 90.362 NaN 1148800 35 0 219940 0.261 + -1 IEALMEPFE 9 82 547.7577992135698 1093.5010454939395 2 547.7579956054688 MULTI HCD FTMS 0 0 0 22455 232015.796875 0.052451137433986994 15 -0.3620758056640625 2 Oxidation (M) _IEALM(Oxidation (M))EPFE_ REV__ENSG00000113580|ENST00000394464|NR3C1;REV__nc|ENSG00000113580|P04150-10|NR3C1;REV__nc|ENSG00000113580|P04150-11|NR3C1;REV__nc|ENSG00000113580|P04150-12|NR3C1;REV__nc|ENSG00000113580|P04150-13|NR3C1;REV__nc|ENSG00000113580|P04150-14|NR3C1;REV__nc|ENSG00000113580|P04150-15|NR3C1;REV__nc|ENSG00000113580|P04150-16|NR3C1;REV__nc|ENSG00000113580|P04150-3|NR3C1;REV__nc|ENSG00000113580|P04150-5|NR3C1;REV__nc|ENSG00000113580|P04150-8|NR3C1 16.942295170755138 0.21397866736869717 2 {I|L}E 2 -1 24.776 0 0 2.2658 0 0 0 848.3512457688242 848.3512457688242 7.124759215276622 0 0 0 0 0 0 0.3807196863200844 0 {I|L}E 2.2658 + + 218 + NaN NaN 265320.4 NaN 18141 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22458 90.365 NaN 1284600 35 0 125750 0.261 + 30453 VLPYYFPTL 9 102 556.8049750515937 1111.5953971699873 2 557.2949829101562 MULTI HCD FTMS 0 0 0 22455 58272.48046875 0.8620629775143377 2 -0.038970947265625 3 Unmodified _VLPYYFPTL_ ENST00000280904.10_2_18:28671106-28672218:-|nuORF 42.09456458481378 0.05572955244001856 2 [YT]{I|L}Q{I|L}{I|L}ES 8 9 61.711 0 0 5.5516 0 0 0 161.07752527273422 161.07752527273422 4.0812718305889675 0 0 0 0 0 1.5228787452803376 1.477656209795975 0.6747425010840047 [YT]{I|L}Q{I|L}{I|L}ES 5.5516 - 767 NaN NaN 284377.5 NaN 18142 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22459 90.369 NaN 389890 35 0 47449 0.261 -1 0 96 589.2822364595514 1176.5499199859028 2 589.2823486328125 MULTI HCD FTMS 0 0 0 22455 172265.9375 0.7721605833363215 -1 0.026153564453125 4 NaN NaN 2 [YN]{I|L} 3 -1 40.7 0 0 3.4593 0 0 0 783.337274018924 783.337274018924 15.486643484753479 0 0 0 0 1 1.6989700043360187 0 0.3252574989159953 [YN]{I|L} 3.4593 - 213 NaN NaN 144429 NaN 18143 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22460 90.372 NaN 336060 35 0 64701 0.262 + 30342 VLELTADVF 9 56 503.77669549952054 1005.5388380658411 2 503.776611328125 MULTI HCD FTMS 0 0 0 22455 19282.95703125 0.28943495290766086 1 -0.0261077880859375 5 Unmodified _VLELTADVF_ ENST00000576225.5_1_17:79058928-79084738:+|nuORF 21.74664581756881 0.17247014374749275 2 DV{M(Oxidation (M))|F} 3 6 28.672 0 0 2.8514 0 0 626.3632822894074 0 626.3632822894074 0 12.218487496163561 0 0 0 0.8494850021680094 0 0 0 + DV{M(Oxidation (M))|F} 2.8514 + + 17 NaN NaN 153780 NaN 18144 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22461 90.375 NaN 348760 35 0 28554 0.261 + -1 ELYEMAECV 9 75 580.2351505345704 1158.4557481359407 2 580.2361450195312 MULTI HCD FTMS 0 0 0 22455 35751.71484375 0.4642067223566288 -1 0.026153564453125 6 Carbamidomethyl (C),Oxidation (M) _ELYEM(Oxidation (M))AEC(Carbamidomethyl (C))V_ REV__ENSG00000010671|ENST00000308731|BTK;REV__ENSG00000103653|ENST00000220003|CSK;REV__ENST00000478995.1_1_X:100611030-100611776:-|nuORF;REV__ENST00000563010.1_1_15:75093985-75094348:+|nuORF;REV__ENST00000564216.5_1_15:75092818-75094348:+|nuORF;REV__nc|ENSG00000010671|Q06187-2|BTK 7.289230182591677 0.29575926068275815 2 [Y{I|L}]N 3 -1 15.986 0 0 1.3799 0 0 0 765.2429981120459 765.2429981120459 1.037494375383618 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]N 1.3799 - 105 NaN NaN 145140.7 NaN 18145 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22462 90.379 NaN 114450 35 0 15931 0.261 + 14286 LDAEVLLDSD 10 56 545.2681270910698 1088.5217012489395 2 545.2672119140625 MULTI HCD FTMS 0 0 0 22455 19222.31640625 0.49666579059772126 -7 0.1628265380859375 7 Unmodified _LDAEVLLDSD_ ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4 13.042465956692817 0.38911719078024076 2 {I|L}WE 3 8 37.435 0 0 3.4391 0 0 0 657.3026166866819 657.3026166866819 31.95046257204389 0 0 0 0 0.8494850021680094 0 0.4247425010840047 0 {I|L}WE 3.4391 - 43 + NaN NaN 113951.9 NaN 18146 4314 22455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22464 90.383 NaN 1117600 35 0 223160 0.327 + 4582 EYLPIGGLAEF 11 85 604.8137478809075 1207.612942828615 2 604.8139038085938 MULTI HCD FTMS 0 0 0 22463 604787.9375 1 0 0 1 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 128.93241758739586 0.009902055992489198 2 [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F} 11 0 + 116.82 0 0 9.6737 9.6737 95.056 0 0 0 36.13554504413874 106.56019219234797 36.13554504413874 10.791812460476251 0 2.5114393726401687 1.5228787452803376 1.7786596949921218 0 + + [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}PG{I|L}G{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}N{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G[Q{I|L}]E{M(Oxidation (M))|F};[YE]{I|L}PG{I|L}[Q{I|L}]E{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G{[DS]|[MA]|[CV]|TT}[PA]{M(Oxidation (M))|F};[YE]{I|L}PG{I|L}{[DS]|[MA]|[CV]|TT}[PA]{M(Oxidation (M))|F};[YT]T{[HG]|PP}{I|L}G{I|L}AE{M(Oxidation (M))|F};[YT]T{[HG]|PP}{I|L}[Q{I|L}]E{M(Oxidation (M))|F} 9.6737;8.7801;8.7775;7.0563;6.1627;5.4493;4.5556;4.5498;2.5995 +;-;-;-;-;-;-;-;- + 901 NaN NaN 262151.5 NaN 18147 4315 22463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22465 90.388 NaN 789390 35 0 86550 0.261 -1 FPTVTLLSPG 10 81 537.2975915189766 1072.580630104753 2 537.2976684570312 MULTI HCD FTMS 0 0 0 22463 292568.21875 0.08925959913784655 15 -0.3555145263671875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FPTVTLLSPG_ ENST00000369486.7_1_1:117150701-117150863:-|nuORF 10.823927491677226 0.4098686510432541 2 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 8 -1 36.423 0 0 3.3959 0 0 148.12244711860222 0 148.12244711860222 0 10.572420927871995 0 0 0 0 0 1.7372118693881546 0 EY{M(Oxidation (M))|F}{I|L}S{I|L}[PG] 3.3959 - 967 + NaN NaN 209377 NaN 18148 4315 22463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22466 90.391 NaN 107180 35 0 12268 0.261 + 28281 TLPLPLTSF 9 37 494.78925313741894 987.5639533416379 2 494.7894592285156 MULTI HCD FTMS 0 0 0 22463 12044.166015625 0.02200377673731915 15 -0.3555145263671875 3 Unmodified _TLPLPLTSF_ REV__ENST00000584580.1_1_17:45911366-45911959:+|nuORF;REV__ENST00000584809.1_1_17:45909557-45911959:+|nuORF 11.640296217721598 0.25978676193971967 2 S{M(Oxidation (M))|F} 2 -1 32.206 0 0 3.2612 0 0 735.4534319566754 0 735.4534319566754 0 23.64970648723208 0 0 0 1 0 0.4247425010840047 0 S{M(Oxidation (M))|F} 3.2612 + + 14 + NaN NaN 111633.3 NaN 18149 4315 22463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22468 90.396 NaN 1346200 35 0 293760 0.327 + 20697 PFQLHCMRCQ 10 99 631.782865301913 1261.551177670626 2 631.7828979492188 MULTI HCD FTMS 0 0 0 22467 699357.875 0.9365788356290679 -6 0.14032745361328125 1 Unmodified _PFQLHCMRCQ_ REV__ENSG00000171053|ENST00000305738|PATE1;REV__nc|ENSG00000171053|Q8WXA2-2|PATE1;REV__PATE1|p.G57A|1|0.4|ENSG00000171053|chr11:125747745-125747745|G/C|missense_variant 10.073929032068715 0.4168838835836452 2 S{I|L}{I|L}{M(Oxidation (M))|F}EQPE 8 -1 71.579 0 0 5.6739 0 0 300.0590992658219 0 300.0590992658219 0 55.09876862955171 0 0 0 2.447621246364342 0 1.0752574989159953 0.3494850021680094 S{I|L}{I|L}{M(Oxidation (M))|F}EQPE 5.6739 - 983 NaN NaN 285824.9 NaN 18150 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22469 90.401 NaN 483480 35 0 70594 0.263 + 15059 LLTGQLLLL 9 45 492.3287412041687 982.6429294751374 2 492.32867431640625 MULTI HCD FTMS 0 0 0 22467 218958.21875 0.572538484983931 1 -0.03954315185546875 2 Unmodified _LLTGQLLLL_ REV__ENST00000409598.8_2_4:152097706-152097769:-|nuORF 57.47134341890925 0.0211188941628804 2 {I|L}{I|L}[{I|L}A]{[QS]|[NT]}{I|L}{I|L}{I|L} 9 -1 + 66.857 0 0 6.8038 6.8038 94.9 0 0 0 31.411962188136542 45.77500619321228 31.411962188136542 66.85727478186053 0 0.9247425010840047 1.5228787452803376 0.7742275032520141 0.8494850021680094 {I|L}{I|L}[{I|L}A]{[QS]|[NT]}{I|L}{I|L}{I|L} 6.8038 - 45 NaN NaN 173992.8 NaN 18151 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22470 90.404 NaN 805860 35 0 120790 0.261 + 31955 VYPFENFEF 9 87 596.272085163325 1190.5296173934498 2 596.2733764648438 MULTI HCD FTMS 0 0 0 22467 149214.390625 0.23987615196666012 10 -0.2677459716796875 3 Unmodified _VYPFENFEF_ nc|ENSG00000116885|Q8WVF1-4|OSCP1 53.40400417844725 0.026808823219830042 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}HN{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 7 4 65.813 0 0 5.528 0 0 204.08990676093907 0 204.08990676093907 0 12.772861173562674 0 0 0 2.56295299324845 0 0 0.3252574989159953 {M(Oxidation (M))|F}{M(Oxidation (M))|F}HN{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 5.528 - 4122 NaN NaN 221606.6 NaN 18152 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22471 90.408 NaN 424290 35 0 77682 0.261 -1 0 85 633.3694187770183 1264.7242846208364 2 633.8707275390625 MULTI HCD FTMS 0 0 0 22467 121490.234375 0.14285171777198372 39 -1.0172576904296875 4 NaN NaN 2 {I|L}{M(Oxidation (M))|F}{I|L}MV 5 -1 14.358 0 0 1.1353 0 0 390.26781597024893 268.1232088678344 658.3910248380834 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}MV 1.1353 - 112 + NaN NaN 159948.5 NaN 18153 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22472 90.411 NaN 205880 35 0 11575 0.261 + -1 PLEPLLRCFV 10 64 622.3475807826734 1242.6806086321467 2 622.3477172851562 MULTI HCD FTMS 0 0 0 22467 108784.1875 0.36639207124128303 22 -0.5489425659179688 5 Carbamidomethyl (C) _PLEPLLRC(Carbamidomethyl (C))FV_ REV__ENST00000395841.6_1_20:55953421-55953598:+|nuORF 6.2057823575117 0.44245551207394906 2 [YN]{I|L} 3 -1 17.447 0 0 1.404 0 0 0 849.4687305406029 849.4687305406029 8.947340481202065 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 1.404 - 86 NaN NaN 127054 NaN 18154 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22473 90.414 NaN 187170 35 0 13888 0.264 -1 0 55 407.90650160105304 1220.6976754033592 3 407.90625 MULTI HCD FTMS 0 0 0 22467 81903.3125 0.2426832676247058 19 -0.4668426513671875 6 NaN NaN 2 [{M(Oxidation (M))|F}E]{I|L} 3 -1 9.4936 0 0 0.77772 0 0 0 828.5126527805654 828.5126527805654 2.5038591782507815 0 0 0 0 0 0 0.3807196863200844 0 [{M(Oxidation (M))|F}E]{I|L} 0.77772 - 14 NaN NaN 118517.4 NaN 18155 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22474 90.418 NaN 307510 35 0 28362 0.261 + 19303 NLVSHVLTRR 10 82 597.856669126769 1193.698785320338 2 597.8566284179688 MULTI HCD FTMS 0 0 0 22467 45540.31640625 0.4162703970627501 1 -0.03954315185546875 7 Unmodified _NLVSHVLTRR_ REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense 5.296884461304476 0.4472664531305844 2 W 1 -1 15.485 0 0 1.2972 0 0 989.6094431345942 0 989.6094431345942 0 5 0 0 0 0 0 0 0 W 1.2972 - 249 + NaN NaN 135909.5 NaN 18156 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22475 90.421 NaN 157450 35 0 16349 0.261 + 18565 MVGWIDELSL 10 50 581.7940489857635 1161.573545038327 2 581.7935791015625 MULTI HCD FTMS 0 0 0 22467 47678.85546875 0.5827094773530874 1 -0.03954315185546875 8 Unmodified _MVGWIDELSL_ REV__ENST00000521983.1_1_8:26484742-26500445:+|nuORF 16.149105407346934 0.3600587335443843 2 E{I|L}S{I|L} 4 -1 45.745 0 0 3.9382 0 0 701.3209095685562 0 701.3209095685562 0 38.75569708000178 0 0 0 1.3807196863200843 0 0 0 E{I|L}S{I|L} 3.9382 + + 25 NaN NaN 111614.7 NaN 18157 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22476 90.424 NaN 115170 35 0 4995.9 0.264 + 10191 IFVFTTKMLPL 11 50 437.2574313284546 1308.7504645855638 3 437.2576904296875 MULTI HCD FTMS 0 0 0 22467 77270 0.22691438594295185 15 -0.35225677490234375 9 Unmodified _IFVFTTKMLPL_ REV__ENST00000316902.11_1_14:23652558-23652753:-|nuORF;REV__ENST00000525062.1_3_14:23652243-23652753:-|nuORF 1.214830529360525 0.41359283248740725 2 K 1 -1 2.4743 0 0 0.18905 0 0 872.5231219115389 305.10029016666255 1177.6234120782015 0 0 0 0 0 0 0 0 0 K 0.18905 + + 3 + NaN NaN 125156 NaN 18158 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22477 90.428 NaN 81486 35 0 8610 0.261 + 31266 VVYGLTAIL 9 42 474.7918408768186 947.5691288204372 2 474.79132080078125 MULTI HCD FTMS 0 0 0 22467 17539.6640625 0.22192228320839388 -6 0.14032745361328125 10 Unmodified _VVYGLTAIL_ ENSG00000167332|ENST00000396950|OR51E2 11.640296217721598 0.25978676193971967 2 RT[{I|L}A]{I|L} 5 5 21.823 0 0 2.303 0 0 375.21397597480626 0 375.21397597480626 0 19.83288122256525 0 0 0 0.5 0 0 0 RT[{I|L}A]{I|L} 2.303 - 16 NaN NaN 96975.8 NaN 18159 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22478 90.431 NaN 83648 35 0 13146 0.261 + 19518 NRQKSIAGF 9 45 510.78433462294277 NaN 0 510.77362060546875 PEAK HCD FTMS 0 0 0 22467 18194.80078125 1 0 0 11 Unmodified _NRQKSIAGF_ ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3 9.347437153973935 0.2499504662953367 2 {I|L}AG 3 6 12.307 0 0 1.2071 0 0 613.3333349179575 162.05596338443596 775.3892983023934 0 0 0 0 0 0 0 0 0 + {I|L}AG 1.2071 + + 17 + NaN NaN 103188 NaN 18160 4316 22467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22480 90.436 NaN 5888400 35 0 910070 0.327 + 27641 TAISLFYEL 9 91 528.7843208890033 1055.5540888448065 2 528.7835083007812 MULTI HCD FTMS 0 0 0 22479 2863221.25 0.02857420229746378 18 -0.42729949951171875 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 92.674 0 0 8.7797 8.7797 96.375 0 0 0 5.6424927368725974 58.58349385648225 5.6424927368725974 24.710665067667847 0 2.5669015600442577 0 1.8411290632962718 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[TV]|[{I|L}S]}[TA]{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}EY{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}S[YE]{I|L}{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}{I|L}S[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}{I|L}S[TA]{I|L};[YT][{I|L}A][{I|L}A]YE{I|L} 8.7797;6.4386;4.8974;4.6724;4.6627;3.3095;3.0001;2.8742;2.8192;2.7649 +;-;-;-;-;-;-;-;-;- + 1998 NaN NaN 644126 NaN 18161 4317 22479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22481 90.44 NaN 399800 35 0 47835 0.261 + 780 ASSFVFLNL 9 67 499.27138872644673 996.5282245196935 2 499.27142333984375 MULTI HCD FTMS 0 0 0 22479 46997.32421875 0.21763880220065038 8 -0.198699951171875 2 Unmodified _ASSFVFLNL_ ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-2|SURF4;nc|ENSG00000148248|O15260-3|SURF4 41.8396318013385 0.056899836730939755 2 {I|L}NV{M(Oxidation (M))|F}N{I|L} 6 5 30.214 0 0 3.0319 0 0 278.16234023261876 0 278.16234023261876 0 1.402150411921781 0 0 0 0.805462187404089 0 0 0 {I|L}NV{M(Oxidation (M))|F}N{I|L} 3.0319 - 239 NaN NaN 165977.2 NaN 18162 4317 22479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22482 90.444 NaN 353990 35 0 66894 0.261 + 15768 LPFSIDPYL 9 53 532.7866960893666 1063.5588392455331 2 532.7871704101562 MULTI HCD FTMS 0 0 0 22479 109585.8515625 0.8363671716177055 -1 0.03954315185546875 3 Unmodified _LPFSIDPYL_ ENSG00000086570|ENST00000261800|FAT2;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant 34.10243960390752 0.09241788333544565 2 DPY{I|L} 4 5 48.928 0 0 4.6004 0 0 557.3206784894672 0 557.3206784894672 0 31.938200260161125 0 0 0 1.4247425010840047 0 0.2742275032520141 0 + DPY{I|L} 4.6004 + + 48 NaN NaN 163798.4 NaN 18163 4317 22479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22483 90.447 NaN 125050 35 0 33759 0.261 -1 IWDGMKVVSHS 11 45 637.8118795950836 NaN 0 637.8131713867188 PEAK HCD FTMS 0 0 0 22479 35084.734375 0.43705016157104437 8 -0.198699951171875 4 Oxidation (M) _IWDGM(Oxidation (M))KVVSHS_ ENSG00000080031|ENST00000376350|PTPRH;ENST00000588559.5_1_19:55705613-55720813:-|nuORF;nc|ENSG00000080031|Q9HD43-2|PTPRH;nc|ENSG00000080031|Q9HD43-3|PTPRH 2.282774691075616 0.33564456907475565 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116328.4 NaN 18164 4317 22479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22485 90.452 NaN 4522900 35 0 691180 0.327 + 27642 TAISLFYEL 9 105 528.7843208890033 1055.5540888448065 2 528.7848510742188 MULTI HCD FTMS 0 0 0 22484 2292299 0.022876546949445114 19 -0.4669189453125 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 103.64 0 0 9.8188 9.8188 98.248 0 0 0 14.147744131989128 14.147744131989128 14.147744131989128 39.06295947543775 0 2.5669015600442577 1.3979400086720375 1.8411290632962718 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}YE{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}S{I|L}[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[TA]AY{I|L}{I|L}YE{I|L};[{I|L}V]YG{[TV]|[{I|L}S]}YE{I|L} 9.8188;6.1181;5.9513;5.8583;5.3978;4.4171;3.9768;3.8742;3.4318;2.8426 +;-;-;-;-;-;-;-;-;- + 2597 NaN NaN 643713.4 NaN 18165 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22486 90.457 NaN 1585900 35 0 249340 0.261 + 29925 VFDWIEANL 9 88 553.7796652649234 1105.5447775966468 2 553.7798461914062 MULTI HCD FTMS 0 0 0 22484 780257.25 0.4641171687926114 3 -0.0819549560546875 2 Unmodified _VFDWIEANL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 149.91393105778798 8.917243180786556E-06 2 [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L} 9 0 + 83.765 0 0 7.5768 7.5768 93.075 0 0 0 1.6847792642792 52.860527937172606 1.6847792642792 13.015384402724592 0 2.6861818737241734 0 1.3252574989159953 0.3807196863200844 + + [{M(Oxidation (M))|F}V]DW{I|L}EAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}EAGG{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAN{I|L};[{M(Oxidation (M))|F}V][WE]VEAN{I|L};[WD]{M(Oxidation (M))|F}{I|L}VEAN{I|L};[WD]{M(Oxidation (M))|F}V{I|L}EAGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[PG]HNRAN{I|L};[{M(Oxidation (M))|F}V]DW{I|L}[QA]D{I|L};[{M(Oxidation (M))|F}V][WE]VEAGG{I|L};[WD]{M(Oxidation (M))|F}{I|L}VEAGG{I|L} 7.5768;6.3995;6.0712;5.4961;5.4863;4.8939;4.6068;4.4725;4.3188;4.309 +;-;-;-;-;-;-;-;-;- + 4283 NaN NaN 346266 NaN 18166 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22487 90.46 NaN 872400 35 0 33355 0.261 -1 0 105 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22484 737444.8125 0.3927551163677366 18 -0.43398284912109375 3 NaN NaN 2 D[RV]AR 5 -1 20.776 0 0 1.6786 0 0 105.07936566739347 532.2807100885374 637.3600757559309 0 0 0 0 0 0.9802046884880937 0 0.3807196863200844 1 D[RV]AR 1.6786 - 411 + NaN NaN 229576.3 NaN 18167 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22488 90.464 NaN 1906300 35 0 234130 0.261 -1 0 110 539.7753191711168 1077.5360854090336 2 539.7758178710938 MULTI HCD FTMS 0 0 0 22484 499876.59375 0.02586413453694719 18 -0.43398284912109375 4 NaN NaN 2 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 86.974 0 0 8.0715 0 0 0 279.0959765875878 279.0959765875878 55.61706352137996 0 0 0 0 2.2302046884880937 1.5228787452803376 0.6747425010840047 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 8.0715 - 6065 + NaN NaN 379889 NaN 18168 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22489 90.467 NaN 1469500 35 0 553500 0.263 -1 0 58 405.11861942977845 808.2226859263569 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22484 353112.5 0.12922480578310855 -4 0.0947418212890625 5 NaN NaN 2 V 1 -1 0.48455 0 0 0.059953 0 0 422.05030541053503 284.0745455060846 706.1248509166196 0 0 0 0 0 0 0 0 0 V 0.059953 - 14 + NaN NaN 323649.3 NaN 18169 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22490 90.47 NaN 358530 35 0 49920 0.261 + 22404 QPSPILEFL 9 51 522.2928448585137 1042.5711367838273 2 522.29248046875 MULTI HCD FTMS 0 0 0 22484 130279.4609375 0.6016742403758402 3 -0.0819549560546875 6 Unmodified _QPSPILEFL_ ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant 37.97399986684836 0.07464525285885698 2 E{M(Oxidation (M))|F}{I|L} 3 6 38.188 0 0 3.6628 0 0 635.3639788765704 0 635.3639788765704 0 31.989700043360187 0 0 0 0.9247425010840047 0 0.4247425010840047 0 + E{M(Oxidation (M))|F}{I|L} 3.6628 + + 59 NaN NaN 162925.5 NaN 18170 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22491 90.474 NaN 237520 35 0 33301 0.261 + -1 EMLVWEALGG 10 66 560.7699389573114 1119.5253249814227 2 560.7688598632812 MULTI HCD FTMS 0 0 0 22484 104436.8046875 0.49153088991436467 3 -0.0819549560546875 7 Oxidation (M) _EM(Oxidation (M))LVWEALGG_ REV__ENSG00000168802|ENST00000448552|CHTF8 25.399314129420986 0.2735354021946395 2 EAN{I|L} 4 -1 45.42 0 0 4.057 0 0 674.3055094808171 0 674.3055094808171 0 11.007112333562858 0 0 0 1.5 0 0 0.3252574989159953 EAN{I|L} 4.057 - 166 NaN NaN 155047.8 NaN 18171 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22492 90.477 NaN 95115 35 0 4861.3 0.261 -1 0 54 641.8826105638228 1281.7506681944456 2 641.8828735351562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 H 1 -1 6.9897 0 0 0.54532 0 0 671.4019265946393 470.2544344537719 1141.6563610484113 0 0 0 0 0 0 0 0 0 H 0.54532 - 12 + NaN NaN 113793.2 NaN 18172 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22493 90.48 NaN 319170 35 0 39709 0.263 -1 TLCAMECP 8 60 499.1933232241646 996.3720935151292 2 499.1932067871094 MULTI HCD FTMS 0 0 0 22484 45630.578125 0.304265182617538 2 -0.0558013916015625 9 2 Carbamidomethyl (C),Oxidation (M) _TLC(Carbamidomethyl (C))AM(Oxidation (M))EC(Carbamidomethyl (C))P_ nc|ENSG00000146839|Q9Y493-2|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN 5.230669730166228 0.5342319408533849 2 [{I|L}T]C(Carbamidomethyl (C))VH 5 -1 32.988 0 0 3.3109 0 0 0 383.05486307649613 383.05486307649613 18.78785186542885 0 0 0 0 0 1.5228787452803376 0.7302046884880937 0 [{I|L}T]C(Carbamidomethyl (C))VH 3.3109 - 129 NaN NaN 144755.5 NaN 18173 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22494 90.484 NaN 294380 35 0 34139 0.261 + 22130 QINGEIDLL 9 66 507.7763240994296 1013.5380952656592 2 507.77685546875 MULTI HCD FTMS 0 0 0 22484 62457.70703125 0.6519334721097895 -4 0.0947418212890625 10 Unmodified _QINGEIDLL_ ENSG00000138376|ENST00000260947|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;nc|ENSG00000138376|Q99728-3|BARD1 20.41453444215458 0.18397929046831515 2 {I|L}D{I|L}{I|L} 4 5 40.756 0 0 4.0212 0 0 541.2497425763687 0 541.2497425763687 0 17.084171445583685 0 0 0 1.1203715150305282 0 0 0 + {I|L}D{I|L}{I|L} 4.0212 + + 166 NaN NaN 158956.5 NaN 18174 4318 22484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22496 90.488 NaN 1245600 35 0 47810 0.327 -1 0 107 611.3564756461734 1220.6983983591467 2 611.3563232421875 MULTI HCD FTMS 0 0 0 22495 1709346.75 0.4677070878751834 30 -0.7745513916015625 1 NaN NaN 2 Q 1 -1 9.6484 0 0 0.7904 0 0 590.3522948157745 499.2755050768233 1089.6277998925977 0 0 0 0 0 0.6549471895720985 0 0 0 Q 0.7904 - 234 + NaN NaN 287423.7 NaN 18175 4319 22495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22497 90.493 NaN 1516800 35 0 205930 0.261 + 32357 VYVLTNLAYF 10 89 601.8265663600953 1201.6385797869905 2 601.8267822265625 MULTI HCD FTMS 0 0 0 22495 963087.1875 0.9345219471786973 1 -0.01953125 2 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 215.26954161859243 6.013946718831638E-32 2 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 0 + 135.74 0 0 11.296 11.296 93.163 0 0 0 22.498774732165998 95.68372844799335 22.498774732165998 7.786596949921218 0 3.2302046884880937 1.5228787452803376 1.7971062485323517 1.5114393726401687 + + [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};YVV{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTGG{I|L}AY{M(Oxidation (M))|F};YVV{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}T[QA]VY{M(Oxidation (M))|F};[YV]{I|L}A{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VT[QA]VY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}AY{M(Oxidation (M))|F} 11.296;10.648;9.2759;9.2222;8.6279;8.0112;7.7272;7.6884;7.0792;7.0186 +;-;-;-;-;-;-;-;-;- + 2380 NaN NaN 326870.3 NaN 18176 4319 22495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22498 90.496 NaN 1357300 35 0 290210 0.261 + 20251 NYLPFIMEL 9 73 578.2915180423745 1154.568483151549 2 578.29150390625 MULTI HCD FTMS 0 0 0 22495 534631.4375 0.3309619067200089 4 -0.08800506591796875 3 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 147.05914393524117 1.1935124485855994E-05 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 106.81 0 0 9.2508 9.2508 91.868 0 0 0 6.914543788274798 6.914543788274798 6.914543788274798 6.914543788274798 0 2.5994850021680094 1.5228787452803376 0 1.3979400086720375 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};NY{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};NY{I|L}P{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[VG]P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{[SA]|[TG]}{M(Oxidation (M))|F}P{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}K{[SA]|[TG]}{M(Oxidation (M))|F}P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 9.2508;8.6519;7.7317;4.9834;4.9666;4.5534;4.033;3.4383;3.3041 +;+;-;-;-;-;-;-;- + 675 NaN NaN 301204.5 NaN 18177 4319 22495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22499 90.5 NaN 243300 35 0 20806 0.261 + 34083 YNLRQRKTV 9 80 589.3431414453358 1176.6717299574716 2 589.3432006835938 MULTI HCD FTMS 0 0 0 22495 121062.03125 0.6233443859124911 10 -0.2310638427734375 4 Unmodified _YNLRQRKTV_ ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B 7.910154910731844 0.2910521888787154 2 [YN]{I|L} 3 6 28.829 0 0 2.4501 0 0 0 783.458460785051 783.458460785051 19.36542971885073 0 0 0 0 0 1.6989700043360187 0 0.28872548999643577 + [YN]{I|L} 2.4501 + + 53 NaN NaN 130706 NaN 18178 4319 22495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22500 90.503 NaN 881030 35 0 289160 0.262 + 26789 SYIALPLTL 9 66 495.7972950477109 989.5800371622219 2 495.79736328125 MULTI HCD FTMS 0 0 0 22495 246626.046875 0.15115653989822375 -8 0.2028656005859375 5 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 123.45060196383646 0.0010021686353097689 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L} 9 0 + 65.987 0 0 6.6682 6.6682 92.528 0 0 0 4.762036441594191 5.31743128760553 4.762036441594191 19.68765315847925 0 2.6307196863200843 0 1.8129529932484498 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[TV]|[{I|L}S]}{I|L}P{I|L}T{I|L};[{I|L}T][YG]{I|L}P{I|L}T{I|L};[{I|L}T][{I|L}P]{I|L}[YG]T{I|L} 6.6682;4.6787;3.5025;0.85792 +;-;-;- + 164 + NaN NaN 230058.7 NaN 18179 4319 22495 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22502 90.508 NaN 2321800 35 0 256760 0.327 + 29170 TYIQILESF 9 106 557.2953432443212 1112.5761335554423 2 557.2957153320312 MULTI HCD FTMS 0 0 0 22501 822468.75 0.7388326203177932 -2 0.0558013916015625 1 Unmodified _TYIQILESF_ ENSG00000187790|ENST00000267430|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM 160.6895995991744 8.89223804155775E-09 2 [YT]{I|L}Q{I|L}{I|L}ES{M(Oxidation (M))|F} 9 0 + 107.06 0 0 9.6225 9.6225 93.909 0 0 0 1.1836995106618389 1.1836995106618389 1.1836995106618389 9.208187539523749 0 3.0994850021680094 1.5228787452803376 2.069095041121134 0 + + [YT]{I|L}Q{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}[AG]{I|L}{I|L}ES{M(Oxidation (M))|F};[YT]{I|L}VAA{I|L}ES{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[SA]|[TG]}{I|L}{I|L}ES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[SA]|[TG]}{I|L}{I|L}ES{M(Oxidation (M))|F};[Q{I|L}][YT]{I|L}{I|L}ES{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[Y{I|L}]AA{I|L}ES{M(Oxidation (M))|F};[{I|L}V]YTAA{I|L}ES{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}E{I|L}Q{I|L}[YT];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}Q{I|L}[YT] 9.6225;8.7948;7.6939;7.5891;7.0399;6.0877;6.0632;5.3496;1.8927;1.7304 +;-;-;-;-;-;-;-;-;- + 2081 + NaN NaN 440536.8 NaN 18180 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22503 90.512 NaN 1445500 35 0 281230 0.261 -1 0 70 526.296947782167 1050.5793426311338 2 526.2969360351562 MULTI HCD FTMS 0 0 0 22501 621857.5 0.4320555506197067 -2 0.0558013916015625 2 NaN NaN 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 9 -1 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} + + 89.369 19.833 8.1241 8.5066 8.5066 68.133 0 0 0 0 53.42682054990394 0 0 0 2.868415180652539 0 1.6989700043360187 0.6139829889124311 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{I|L}{I|L}NT{M(Oxidation (M))|F} 8.5066 - 230 + NaN NaN 302522.7 NaN 18181 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22504 90.516 NaN 366940 35 0 66340 0.261 + 7873 FYTFPFQQL 9 78 595.7980501877404 1189.5815474422807 2 595.7977905273438 MULTI HCD FTMS 0 0 0 22501 136111.125 0.03416753286583367 20 -0.48966217041015625 3 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 99.75527289724121 0.004270341300239591 2 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 72.233 0 0 6.0722 6.0722 88.665 0 0 0 3.65279269351241 42.92628827205888 3.65279269351241 9.208187539523749 0 2.416386562212267 0 1.4916440611282626 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}PA{[CT]|[{M(Oxidation (M))|F}G]}Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}[YT][HV]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[PS][KG];[Y{M(Oxidation (M))|F}]T[SG]{[HG]|PP}{M(Oxidation (M))|F}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 6.0722;5.2981;5.2981;4.5277;3.132;2.7713;2.6614;0.027658 +;-;-;-;-;-;-;- + 820 NaN NaN 147316.2 NaN 18182 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22505 90.519 NaN 653550 35 0 120640 0.261 + 1850 CVDWRTPAF 9 68 547.7577992135698 1093.5010454939395 2 547.7581176757812 MULTI HCD FTMS 0 0 0 22501 110970.609375 0.025086803406740712 21 -0.515838623046875 4 Unmodified _CVDWRTPAF_ ENSG00000184956|ENST00000421673|MUC6 13.50788311687929 0.24365122550260465 2 [YT]VA 4 7 40.93 0 0 3.743 0 0 0 656.2624340039582 656.2624340039582 16.15356566548286 0 0 0 0 0 2 0.9247425010840047 0 [YT]VA 3.743 - 128 NaN NaN 202636.9 NaN 18183 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22506 90.523 NaN 243820 35 0 33107 0.261 + 314 AFSPVLLQF 9 56 511.28958921936004 1020.5646255055201 2 511.2894592285156 MULTI HCD FTMS 0 0 0 22501 29012.25390625 0.32870300091851035 -3 0.07202911376953125 5 Unmodified _AFSPVLLQF_ ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B 49.93300154707207 0.03166451819912738 2 {I|L}{I|L}AG{M(Oxidation (M))|F} 5 7 52.959 0 0 5.1892 0 0 501.25952600554234 0 501.25952600554234 0 44.00637524615391 0 0 0 1.5 0 0 0 {I|L}{I|L}AG{M(Oxidation (M))|F} 5.1892 - 90 + NaN NaN 146065.5 NaN 18184 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22507 90.526 NaN 71780 35 0 10815 0.261 + 15859 LPLCMHPYL 9 31 543.7779793108353 NaN 0 543.778076171875 PEAK HCD FTMS 0 0 0 22501 27361.837890625 0.48417022014283395 -2 0.0558013916015625 6 Unmodified _LPLCMHPYL_ ENST00000573130.2_1_16:3104061-3104997:-|nuORF 14.581692164780916 0.22376707489839515 2 P{M(Oxidation (M))|F} 2 7 9.464 0 0 0.87182 0 0 113.08444390838231 725.3155001275999 838.3999440359822 0 0 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 0.87182 - 4 + NaN NaN 109560.5 NaN 18185 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22508 90.529 NaN 73651 35 0 17715 0.262 -1 LYCENRSCRR 10 39 452.8806411680367 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 22501 19450.955078125 0.9204377631939278 7 -0.17899322509765625 7 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))ENRSCRR_ ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant 0.5631705045366581 0.3397022931312153 2 E 1 -1 3.0989 0 0 0.3429 0 0 469.518074472989 302.16587244205317 771.6839469150422 0 0 0 0 0 0 0 0 0 E 0.3429 + + 1 + NaN NaN 96315.6 NaN 18186 4320 22501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22510 90.534 NaN 827520 35 0 195280 0.327 + 31323 VWSENWSHAF 10 74 631.782865301913 1261.551177670626 2 631.7830810546875 MULTI HCD FTMS 0 0 0 22509 366283.28125 0.49052592574798615 -1 0.026153564453125 1 Unmodified _VWSENWSHAF_ REV__ENSG00000111897|ENST00000339697|SERINC1;REV__ENSG00000132824|ENST00000342374|SERINC3;REV__nc|ENSG00000132824|Q13530-2|SERINC3 7.101721422024254 0.4377131641736035 2 [QP]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 44.442 0 0 3.5228 0 0 0 384.069757383409 384.069757383409 26.065269135916346 0 0 0 0 1.6307196863200843 0 0.7302046884880937 0.7302046884880937 [QP]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L}{I|L} 3.5228 - 306 NaN NaN 232615.5 NaN 18187 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22511 90.539 NaN 544180 35 0 94083 0.261 -1 0 87 633.3693349814924 1264.7241170297848 2 633.3705444335938 MULTI HCD FTMS 0 0 0 22509 173806.828125 0.05643857156112681 -28 0.6790008544921875 2 NaN NaN 2 {I|L}{I|L}{M(Oxidation (M))|F}M 4 -1 18.092 0 0 1.4305 0 0 390.26514593779103 367.19687830142817 757.4620242392192 0 0 0 0 0 0.3054621874040891 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}M 1.4305 - 149 + NaN NaN 177309.6 NaN 18188 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22512 90.542 NaN 560630 35 0 131160 0.261 + 33225 YFEELITML 9 71 587.7887695612784 1173.5629861893567 2 587.7890625 MULTI HCD FTMS 0 0 0 22509 108649.4765625 0.36114345019758176 -13 0.31354522705078125 3 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 52.268347100219714 0.028397529699942435 2 T{I|L}{I|L}Q{M(Oxidation (M))|F}C(Carbamidomethyl (C))D 7 7 62.823 0 0 5.3532 0 0 278.1294117658219 0 278.1294117658219 0 43.3593385539001 0 0 0 1.805462187404089 0 0.3807196863200844 0 T{I|L}{I|L}Q{M(Oxidation (M))|F}C(Carbamidomethyl (C))D 5.3532 - 825 NaN NaN 189384.5 NaN 18189 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22513 90.545 NaN 230910 35 0 38577 0.261 + 4583 EYLPIGGLAEF 11 62 604.8137478809075 1207.612942828615 2 604.8138427734375 MULTI HCD FTMS 0 0 0 22509 64016.3515625 0.1058492532558158 6 -0.15283966064453125 4 Unmodified _EYLPIGGLAEF_ ENSG00000125166|ENST00000245206|GOT2;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF 74.19965305603844 0.011256494238720478 2 [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F} 11 0 + 92.026 0 0 7.6205 7.6205 89.52 0 0 0 27.679932493774928 78.83858260534257 27.679932493774928 6.575773191777927 0 1.9731975075880328 1.3010299956639813 0.7302046884880937 0 + + [YE]{I|L}P{I|L}GG{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}N{I|L}AE{M(Oxidation (M))|F};[YE]{I|L}P{I|L}G[Q{I|L}]E{M(Oxidation (M))|F};[YE][VP][{I|L}A]G{I|L}AE{M(Oxidation (M))|F};[YE][VP][Q{I|L}]{I|L}AE{M(Oxidation (M))|F} 7.6205;7.076;5.2561;4.9245;4.3799 +;-;-;-;- + 236 NaN NaN 132537.9 NaN 18190 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22514 90.549 NaN 442220 35 0 67631 0.262 -1 0 52 506.78868445897314 1011.5628159847463 2 506.78875732421875 MULTI HCD FTMS 0 0 0 22509 96802.390625 0.283525520190489 -5 0.137725830078125 5 NaN NaN 2 {I|L}AMT{I|L} 5 -1 47.792 0 0 4.7245 0 0 464.2608039548569 0 464.2608039548569 0 25.810384486277798 0 0 0 1.7614393726401687 0 0 0 {I|L}AMT{I|L} 4.7245 - 100 NaN NaN 162491.2 NaN 18191 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22515 90.552 NaN 304010 35 0 57842 0.261 + 11320 IYLVSIPEL 9 58 523.8105651934984 1045.6065774537967 2 523.8106079101562 MULTI HCD FTMS 0 0 0 22509 73619.109375 0.4160474536909285 -5 0.137725830078125 6 Unmodified _IYLVSIPEL_ ENSG00000185344|ENST00000330342|ATP6V0A2 46.020951573049366 0.037705236580089195 2 VS{I|L}[EP]{I|L} 6 3 42.88 0 0 4.101 0 0 389.2309742658219 0 389.2309742658219 0 35.89062518744797 0 0 0 1.774227503252014 0 0.4247425010840047 0 + VS{I|L}[EP]{I|L} 4.101 + + 80 NaN NaN 133201.2 NaN 18192 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22516 90.555 NaN 73269 35 0 18270 0.262 -1 YCSRLCRRED 10 42 453.20972178344977 NaN 0 453.21051025390625 PEAK HCD FTMS 0 0 0 22509 19819.607421875 0.4719594576682234 -32 0.787109375 7 Carbamidomethyl (C) _YC(Carbamidomethyl (C))SRLCRRED_ ENSG00000232434|ENST00000436881|AJM1 1.7422754331352037 0.33869314273211465 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94471.2 NaN 18193 4321 22509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22518 90.56 NaN 625480 35 0 63601 0.327 -1 SPMDIFDMF 9 91 567.7280089614021 1133.4414649896041 2 567.7279663085938 MULTI HCD FTMS 0 0 0 22517 109490.6796875 0.5326129297474061 13 -0.302947998046875 1 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 41.489 0 0 3.6605 0 0 200.01730740835586 0 200.01730740835586 0 12.103641473898321 0 0 0 1.4291746928241125 0 0.3252574989159953 0 {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6605 - 773 + NaN NaN 193036.4 NaN 18194 4322 22517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22519 90.565 NaN 164780 35 0 10095 0.261 + 34096 YNLVLMLQLH 10 68 622.3475807826734 1242.6806086321467 2 622.3472900390625 MULTI HCD FTMS 0 0 0 22517 142559.453125 0.4801493167882818 28 -0.7255783081054688 2 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 2 [YN]{I|L} 3 -1 17.192 0 0 1.3834 0 0 0 849.4670215562279 849.4670215562279 7.0142246671257205 0 0 0 0 0 1.3010299956639813 0 0 [YN]{I|L} 1.3834 + + 85 NaN NaN 134877.7 NaN 18195 4322 22517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22520 90.568 NaN 177630 35 0 29485 0.261 + 23759 RRHVTDGLLK 10 51 597.856669126769 1193.698785320338 2 597.856201171875 MULTI HCD FTMS 0 0 0 22517 73765.84375 0.6742714915188224 7 -0.159210205078125 3 Unmodified _RRHVTDGLLK_ ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217 1.3295316138638542 0.46826628246186464 2 {I|L} 1 9 5.4846 0 0 0.45946 0 0 334.2700061769228 743.3253267877561 1077.5953329646788 0 0 0 0 0 0 0 0 0 + {I|L} 0.45946 + + 3 + NaN NaN 139654.3 NaN 18196 4322 22517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22521 90.571 NaN 98683 35 0 5899.5 0.264 + -1 ISLTMLKMTKK 11 56 437.25743752493037 1308.7504831749911 3 437.2578430175781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _ISLTM(Oxidation (M))LKMTKK_ REV__ENSG00000053524|ENST00000328913|MCF2L2;REV__ENST00000488149.5_1_3:182910742-182941939:-|nuORF;REV__nc|ENSG00000053524|Q86YR7-4|MCF2L2 1.1097533296519684 0.4140536653900533 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 109041.1 NaN 18197 4322 22517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22523 90.576 NaN 5446200 35 0 979660 0.327 + 27643 TAISLFYEL 9 78 528.7843208890033 1055.5540888448065 2 528.7844848632812 MULTI HCD FTMS 0 0 0 22522 2562812.75 0.025576203714267443 24 -0.6275787353515625 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 94.619 0 0 8.964 8.964 97.789 0 0 0 5.6424927368725974 52.58069299703372 5.6424927368725974 46.39198151975222 0 2.6549471895720984 0 1.947621246364342 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}S{I|L}[TA]{I|L};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}S{I|L}{I|L}[TA];[YE]{M(Oxidation (M))|F}{I|L}S{I|L}{I|L}[TA];{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}S{I|L}[TA]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YES{I|L}[TA]{I|L} 8.964;4.5689;3.1413;2.9745;2.6958;2.5299;2.3286;2.1618;1.762;1.0688 +;-;-;-;-;-;-;-;-;- + 1078 NaN NaN 498373.2 NaN 18198 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22524 90.581 NaN 1223600 35 0 131130 0.252 + 22582 QSVHVLQLI 9 88 518.810656381149 1035.6067598290979 2 518.8104858398438 MULTI HCD FTMS 0 0 0 22522 625119.375 0.4702868832225126 1 -0.03533935546875 2 Unmodified _QSVHVLQLI_ REV__ENSG00000087470|ENST00000549701|DNM1L;REV__ENST00000547932.5_1_12:32832273-32871588:+|nuORF;REV__ENST00000550011.5_1_12:32832273-32858928:+|nuORF;REV__ENST00000551076.5_1_12:32832273-32863873:+|nuORF;REV__nc|ENSG00000087470|O00429-2|DNM1L;REV__nc|ENSG00000087470|O00429-3|DNM1L;REV__nc|ENSG00000087470|O00429-4|DNM1L;REV__nc|ENSG00000087470|O00429-5|DNM1L;REV__nc|ENSG00000087470|O00429-6|DNM1L;REV__nc|ENSG00000087470|O00429-8|DNM1L;REV__nc|ENSG00000087470|O00429-9|DNM1L 7.289230182591677 0.29575926068275815 2 {I|L}Y 2 -1 12.959 0 0 1.2513 0 0 132.14007641124005 624.298211352087 756.438287763327 0 0 0 0 0 0.5 0 0 0 {I|L}Y 1.2513 - 320 + NaN NaN 259272.5 NaN 18199 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22525 90.584 NaN 829050 35 0 149550 0.261 + 31984 VYPLALYGF 9 61 521.78407813417 1041.55360333514 2 521.7843017578125 MULTI HCD FTMS 0 0 0 22522 200445.0625 0.8862759121257563 -1 0.01615142822265625 3 Unmodified _VYPLALYGF_ ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1 56.04830969593885 0.023109620888794903 2 A{I|L}YG{M(Oxidation (M))|F} 5 4 43.972 0 0 4.2218 0 0 472.26943693064624 0 472.26943693064624 0 38.39902832107995 0 0 0 1.6549471895720984 0 0 0 + A{I|L}YG{M(Oxidation (M))|F} 4.2218 + + 216 + NaN NaN 213177.7 NaN 18200 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22526 90.588 NaN 90861 35 0 11956 0.261 -1 LWMEACLG 8 33 490.71397054922846 979.413388165257 2 490.7138977050781 MULTI HCD FTMS 0 0 0 22522 55036.33203125 0.3858575824037146 1 -0.03533935546875 4 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LWM(Oxidation (M))EACLG_ ENST00000560418.1_2_15:90931626-90974461:+|nuORF 2.577480529830294 0.5381683276125971 2 {I|L} 1 -1 6.9897 0 0 0.71366 0 0 155.09610089548045 708.2102524932086 863.3063533886891 0 0 0 0 0 0 0 0 0 {I|L} 0.71366 + + 4 + NaN NaN 103479 NaN 18201 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22527 90.591 NaN 351190 35 0 128380 0.261 -1 ITVSTTMIF 9 53 514.7701578291246 1027.5257627250492 2 514.7698364257812 MULTI HCD FTMS 0 0 0 22522 82406.875 0.5144128632281767 -4 0.08800506591796875 5 Oxidation (M) _ITVSTTM(Oxidation (M))IF_ ENST00000308769.12_2_1:175958519-175996767:-|nuORF 16.942295170755138 0.21397866736869717 2 {M(Oxidation (M))|F}P{I|L}CT{I|L} 6 -1 25.961 0 0 2.5266 0 0 335.1825123517594 0 335.1825123517594 0 6.6695014726648765 0 0 0 0 0 0 0 {M(Oxidation (M))|F}P{I|L}CT{I|L} 2.5266 - 49 NaN NaN 156220.3 NaN 18202 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22528 90.6 NaN 300040 35 0 36529 0.261 -1 VYGQPQLML 9 57 532.7744917810809 1063.5344306289617 2 532.7861328125 MULTI HCD FTMS 0 0 0 22522 30699.904296875 0.4400045942194575 -4 0.08800506591796875 6 Oxidation (M) _VYGQPQLM(Oxidation (M))L_ ENSG00000141367|ENST00000269122|CLTC 12.531546534597751 0.2520865569484384 2 [YV]ED 4 -1 40.445 0 0 3.8029 0 0 0 554.297931113892 554.297931113892 26.46591250700361 0 0 0 0 0.4247425010840047 2 0 0 [YV]ED 3.8029 - 44 + NaN NaN 152074.9 NaN 18203 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22529 90.604 NaN 166250 35 0 34840 0.261 + 31267 VVYGLTAIL 9 41 474.7918408768186 947.5691288204372 2 474.7916259765625 MULTI HCD FTMS 0 0 0 22522 40470.32421875 0.5120546619824384 1 -0.03533935546875 7 Unmodified _VVYGLTAIL_ ENSG00000167332|ENST00000396950|OR51E2 34.10243960390752 0.09241788333544565 2 V{I|L}CA{I|L}{I|L} 6 4 47.626 0 0 5.0261 0 0 317.19465834785314 0 317.19465834785314 0 34.438200260161125 0 0 0 1.25 0 0 0 V{I|L}CA{I|L}{I|L} 5.0261 - 114 NaN NaN 127624.3 NaN 18204 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22530 90.607 NaN 98551 35 0 11574 0.261 -1 LFRMYHCSF 9 55 426.19120780586746 NaN 0 426.1910400390625 PEAK HCD FTMS 0 0 0 22522 18902.931640625 0.3649299362346435 1 -0.03533935546875 8 Carbamidomethyl (C),Oxidation (M) _LFRM(Oxidation (M))YHC(Carbamidomethyl (C))SF_ ENST00000545135.5_1_12:124429208-124429382:-|nuORF 1.0714618166137932 0.2900546878344058 2 {I|L} 1 -1 5.4846 0 0 0.64496 0 0 172.12135496544744 562.1405123346311 734.2618673000786 0 0 0 0 0 0 0 0 0 {I|L} 0.64496 + + 5 + NaN NaN 110193.4 NaN 18205 4323 22522 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22532 90.612 NaN 1354500 35 0 533300 0.327 -1 0 45 405.11861942977845 808.2226859263569 2 405.1189880371094 MULTI HCD FTMS 0 0 0 22531 734969.4375 0.26896890599301365 2 -0.05236053466796875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.6207 0 0 643.143536611707 0 643.143536611707 0 13.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6207 - 4 + NaN NaN 293822.9 NaN 18206 4324 22531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22533 90.616 NaN 745450 35 0 93554 0.261 -1 0 93 539.7753191711168 1077.5360854090336 2 539.7755126953125 MULTI HCD FTMS 0 0 0 22531 341130.03125 0.01765042239056227 24 -0.625030517578125 2 NaN NaN 2 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 84.465 0 0 7.8387 0 0 0 279.0963533990844 279.0963533990844 48.26056992434839 0 0 0 0 2.176935982160881 1.3010299956639813 0.6989700043360187 0 TA{I|L}S{I|L}{M(Oxidation (M))|F}Y 7.8387 - 1488 + NaN NaN 200303.1 NaN 18207 4324 22531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22534 90.62 NaN 459450 35 0 17398 0.261 -1 0 99 619.8696707185969 1237.7247885039938 2 619.8694458007812 MULTI HCD FTMS 0 0 0 22531 437104.90625 0.2327973367079958 24 -0.625030517578125 3 NaN NaN 2 A 1 -1 7.0116 0 0 0.56649 0 0 387.24672293268424 776.4273775690061 1163.6741005016904 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.56649 - 302 + NaN NaN 164892.7 NaN 18208 4324 22531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22535 90.623 NaN 652610 35 0 66685 0.261 + 29926 VFDWIEANL 9 72 553.7796652649234 1105.5447775966468 2 553.7797241210938 MULTI HCD FTMS 0 0 0 22531 213442.546875 0.12696114077185344 9 -0.19899749755859375 4 Unmodified _VFDWIEANL_ ENSG00000114867|ENST00000346169|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 99.75527289724121 0.004270341300239591 2 [{M(Oxidation (M))|F}V]DW{I|L}EA{[QV]|[N{I|L}]|[RA]|[KV]} 9 0 + 63.144 0 0 5.7116 5.7116 84.356 0 0 0 1.9762124636434208 14.247673207481824 1.9762124636434208 1.9762124636434208 0 2.4802046884880937 0 0.6747425010840047 1.0044321917401078 + + [{M(Oxidation (M))|F}V]DW{I|L}EA{[QV]|[N{I|L}]|[RA]|[KV]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TW{I|L}EA{[QV]|[N{I|L}]|[RA]|[KV]};[{M(Oxidation (M))|F}V]DW{I|L}{[QG]|[NA]}{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TW{I|L}{[QG]|[NA]}{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}V][WE]VEA{[QV]|[N{I|L}]|[RA]|[KV]};[{M(Oxidation (M))|F}V]{[WS]|[C(Carbamidomethyl (C)){I|L}]}NRA{[QV]|[N{I|L}]|[RA]|[KV]};[{M(Oxidation (M))|F}V]DW[QA]V{[QN]|[E{I|L}]|[KN]};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TW[QA]V{[QN]|[E{I|L}]|[KN]};[{M(Oxidation (M))|F}V]Y[HS]RA{[QV]|[N{I|L}]|[RA]|[KV]};[{M(Oxidation (M))|F}V]DW{I|L}[QA]{NN|[MP]|[D{I|L}]|[EV]} 5.7116;5.5328;3.4705;3.2917;2.6379;2.4055;2.1177;1.9389;1.8147;1.7318 +;-;-;-;-;-;-;-;-;- + 2042 + NaN NaN 182011.2 NaN 18209 4324 22531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22536 90.626 NaN 346310 35 0 35899 0.261 + 20221 NYLLDMPLW 9 62 590.7893887793316 1179.564224625463 2 591.279052734375 MULTI HCD FTMS 0 0 0 22531 25598.96484375 0.443937634591142 -7 0.17584228515625 5 Oxidation (M) _NYLLDM(Oxidation (M))PLW_ ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A 45.69961567697781 0.039180348357221985 2 [YN]{I|L}{I|L}D{M(Oxidation (M))|F}[{I|L}P]W 9 0 + 62.603 0 0 5.3073 5.3073 88.651 0 0 0 11.42159058960253 11.42159058960253 11.42159058960253 11.42159058960253 0 2.2302046884880937 1.3979400086720375 0 0 + + [YN]{I|L}{I|L}D{M(Oxidation (M))|F}[{I|L}P]W;{I|L}[YN]{I|L}D{M(Oxidation (M))|F}[{I|L}P]W;{I|L}[WD]{M(Oxidation (M))|F}D{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}[NG][NP]NK{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}P]{M(Oxidation (M))|F}D{I|L}[VS]W;[RH]N[NP]{M(Oxidation (M))|F}[{I|L}P]W;{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}P]{M(Oxidation (M))|F}D{I|L}[KP]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}P]{M(Oxidation (M))|F}D{I|L}[QP]{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[VS]{I|L}D{M(Oxidation (M))|F}[{I|L}P]W;{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}Y{I|L}[YE]W 5.3073;4.339;3.6117;3.3859;3.221;3.1053;3.0523;3.0523;2.9176;2.9151 +;-;-;-;-;-;-;-;-;- + 616 NaN NaN 147096.7 NaN 18210 4324 22531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22537 90.63 NaN 68458 35 0 8134.5 0.261 + 260 AFIQAGIFQEF 11 42 635.8270503437939 NaN 0 635.8261108398438 PEAK HCD FTMS 0 0 0 22531 16260.25390625 0.37047237391479326 1 -0.022857666015625 6 Unmodified _AFIQAGIFQEF_ ENSG00000113456|ENST00000382038|RAD1 15.738622578938676 0.2896062992332968 2 Q[Q{I|L}]{M(Oxidation (M))|F} 4 7 19.693 0 0 1.551 0 0 331.18991504130014 419.15549646549067 750.3454115067908 0 0 0 0 0 1.5 0 0 0 Q[Q{I|L}]{M(Oxidation (M))|F} 1.551 - 18 + NaN NaN 108959.6 NaN 18211 4324 22531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22539 90.635 NaN 2783700 35 0 945020 0.327 + 26790 SYIALPLTL 9 54 495.7972950477109 989.5800371622219 2 495.7973327636719 MULTI HCD FTMS 0 0 0 22538 1325646.125 0.8124854771971789 -2 0.058197021484375 1 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 131.26759243768294 0.0005280990274065272 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L} 9 0 + 77.234 0 0 7.8047 7.8047 95.312 0 0 0 2.6820798216272976 2.6820798216272976 2.6820798216272976 28.526909627198407 0 2.5669015600442577 0 0.7742275032520141 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}P{I|L}T{I|L};[{I|L}T][YG]{I|L}P{I|L}T{I|L};[{I|L}T][{I|L}P][YG]{I|L}T{I|L};[{I|L}T][{I|L}P]{I|L}[YG]T{I|L};[{I|L}T][{I|L}P]{I|L}A{I|L}{[{M(Oxidation (M))|F}C]|[YS]} 7.8047;4.922;1.481;0.67998;0.29525 +;-;-;-;- + 169 NaN NaN 508018.3 NaN 18212 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22540 90.639 NaN 890690 35 0 42430 0.261 -1 0 97 611.3564756461734 1220.6983983591467 2 611.3563232421875 MULTI HCD FTMS 0 0 0 22538 969397.8125 0.2652441512390321 36 -0.9587020874023438 2 NaN NaN 2 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}[{M(Oxidation (M))|F}V] 7 -1 11.795 0 0 0.96626 0 0 374.19441006128403 0 374.19441006128403 0 -1.025888458586179 -1.025888458586179 0 0 1.1747425010840047 0 0.6307196863200843 0 K{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[HG]|PP}[{M(Oxidation (M))|F}V] 0.96626 - 149 NaN NaN 225365.7 NaN 18213 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22541 90.643 NaN 530460 35 0 66469 0.261 -1 EYKIRIYAM 9 79 601.8132409932405 1201.6119290532808 2 601.826416015625 MULTI HCD FTMS 0 0 0 22538 14375.224609375 0.5529777461490134 -1 0.022857666015625 3 Oxidation (M) _EYKIRIYAM(Oxidation (M))_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 19.256988751693697 0.19398022840297344 2 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 -1 + 95.276 0 0 7.929 7.929 89.321 0 0 0 22.498774732165998 52.19126414008825 22.498774732165998 4.771212547196626 0 0 1.5228787452803376 1.3371804965004639 1.1549471895720984 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TN{I|L}HP{M(Oxidation (M))|F};[YV]{I|L}VTN{I|L}HP{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}VTGG{I|L}AY{M(Oxidation (M))|F};[YV]{I|L}HNT{I|L}VP{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}HP{M(Oxidation (M))|F};[YV]{I|L}HQS{I|L}VP{M(Oxidation (M))|F};[YV]{I|L}A{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}AY{M(Oxidation (M))|F} 7.929;7.5319;6.6737;6.2767;6.2052;5.8081;5.4547;5.2667;5.0682;5.0433 -;-;-;-;-;-;-;-;-;- 1833 NaN NaN 183406.6 NaN 18214 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22542 90.646 NaN 683230 35 0 98514 0.261 + 10984 IYEEFLAAF 9 63 551.7769337750536 1101.5393146169072 2 551.7769165039062 MULTI HCD FTMS 0 0 0 22538 250439.484375 0.7026378784397004 -2 0.058197021484375 4 Unmodified _IYEEFLAAF_ ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP 67.34385681178166 0.00994769994983633 2 [Y{I|L}]EE{M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 9 0 + 72.743 0 0 6.6037 6.6037 91.478 0 0 0 6.284080882018088 40.48000610965907 6.284080882018088 13.46787486224656 0 2.8182503180159344 1.2218487496163564 0 0 + + [Y{I|L}]EE{M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YE{M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 6.6037;5.3811 +;- + 284 NaN NaN 200284.7 NaN 18215 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22543 90.649 NaN 995950 35 0 48621 0.261 + 8390 GYNSEWKYTF 10 89 647.7908497510301 1293.5671465688602 2 647.7904052734375 MULTI HCD FTMS 0 0 0 22538 264579.40625 0.5881202575588178 -2 0.058197021484375 5 Unmodified _GYNSEWKYTF_ REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|133|3|sense 24.020572477871973 0.2864316864133941 2 T{I|L}{M(Oxidation (M))|F}VC(Carbamidomethyl (C))C(Carbamidomethyl (C))N{[ES]|[DT]|[{I|L}C]} 9 -1 57.079 0 0 4.4125 0 0 165.08097088294772 0 165.08097088294772 0 33.45483957839335 0 0 0 1.9291746928241125 0 1.4916440611282624 1.6549471895720984 T{I|L}{M(Oxidation (M))|F}VC(Carbamidomethyl (C))C(Carbamidomethyl (C))N{[ES]|[DT]|[{I|L}C]} 4.4125 - 567 + NaN NaN 247425.2 NaN 18216 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22544 90.653 NaN 359330 35 0 67459 0.261 -1 0 87 641.8826105638228 1281.7506681944456 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22538 175036.609375 0.10607246756660431 -24 0.572540283203125 6 NaN NaN 2 {I|L}{I|L}QD[YQ]{I|L}W 8 -1 29.59 0 0 2.3085 0 0 204.20226093267212 0 204.20226093267212 0 20.12578788640525 0 0 0 0 0 0 0.3494850021680094 {I|L}{I|L}QD[YQ]{I|L}W 2.3085 - 441 + NaN NaN 160023.2 NaN 18217 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22545 90.656 NaN 436890 35 0 46018 0.262 + 31093 VTFTFPFEF 9 89 567.7782723017956 1133.541991670391 2 567.778564453125 MULTI HCD FTMS 0 0 0 22538 101378.6328125 0.618531769925104 3 -0.06861114501953125 7 Unmodified _VTFTFPFEF_ ENST00000358502.9_1_22:36629478-36635667:-|nuORF;ENST00000397278.7_1_22:36649096-36649195:+|nuORF 20.453626601364224 0.18364154288633264 2 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}A 4 6 38.188 0 0 3.3689 0 0 0 712.2976123581442 712.2976123581442 9.699915470362015 0 0 0 0 1 2 0 0 {[TV]|[{I|L}S]}{M(Oxidation (M))|F}A 3.3689 - 903 NaN NaN 179191.7 NaN 18218 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22546 90.659 NaN 264030 35 0 106580 0.261 -1 CNTWTPICN 9 41 583.2423154991724 1164.4700780651447 2 583.2426147460938 MULTI HCD FTMS 0 0 0 22538 44664.91015625 0.6827822064625179 -1 0.022857666015625 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))NTWTPIC(Carbamidomethyl (C))N_ WDHD1|p.G655C|1|0.27|ENSG00000198554|chr14:54981640-54981640|C/A|missense_variant 1.4819007175156935 0.3397831423917744 2 H 1 -1 2.4743 0 0 0.21248 0 0 609.202478996576 415.1993502252563 1024.4018292218323 0 0 0 0 0 0 0 0 0 H 0.21248 - 8 + NaN NaN 129393.2 NaN 18219 4325 22538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22548 90.664 NaN 1196800 35 0 225620 0.327 -1 0 70 526.296947782167 1050.5793426311338 2 526.2967529296875 MULTI HCD FTMS 0 0 0 22547 647017.3125 0.44953614166054173 4 -0.0749053955078125 1 NaN NaN 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{I|L}{I|L}NT 8 -1 79.676 0 0 7.584 0 0 0 162.05735554258925 162.05735554258925 43.73355817001125 0 0 0 0 2.75 1.3010299956639813 1.4674165578762484 0.28872548999643577 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{I|L}{I|L}NT 7.584 - 200 NaN NaN 276814.2 NaN 18220 4326 22547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22549 90.669 NaN 928930 35 0 143020 0.261 + -1 SYIMRNPF 8 78 522.2531633499948 1042.4917737667895 2 522.2530517578125 MULTI HCD FTMS 0 0 0 22547 253329.25 0.8414893896408149 -1 0.02950286865234375 2 Oxidation (M) _SYIM(Oxidation (M))RNPF_ REV__ENST00000332981.9_1_14:62016967-62017273:+|nuORF 9.347437153973935 0.5250182646323369 2 A{I|L}YG{M(Oxidation (M))|F} 5 -1 28.672 0 0 2.7503 0 0 473.2070586124748 0 473.2070586124748 0 13.266062568876718 0 0 0 0 0 0 0 A{I|L}YG{M(Oxidation (M))|F} 2.7503 - 270 + NaN NaN 227826.2 NaN 18221 4326 22547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22550 90.672 NaN 708730 35 0 130750 0.261 + 29939 VFFEVSPVSF 10 75 579.2970532297528 1156.5795535263055 2 579.2976684570312 MULTI HCD FTMS 0 0 0 22547 244829.34375 0.8533339273075736 -1 0.02950286865234375 3 Unmodified _VFFEVSPVSF_ ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1 51.629811660486645 0.07186226796122157 2 EGSV[RN]S{M(Oxidation (M))|F} 8 7 64.109 0 0 5.543 0 0 262.154579016343 0 262.154579016343 0 49.416061350170594 0 0 0 2.4247425010840047 0 0.75 0.28872548999643577 EGSV[RN]S{M(Oxidation (M))|F} 5.543 - 1348 + NaN NaN 194223.5 NaN 18222 4326 22547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22551 90.675 NaN 318960 35 0 61516 0.261 + 7874 FYTFPFQQL 9 66 595.7980501877404 1189.5815474422807 2 595.7977905273438 MULTI HCD FTMS 0 0 0 22547 114959.9453125 0.028858021045078317 26 -0.6741790771484375 4 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 78.7280429016045 0.006263961847259105 2 [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L} 9 0 + 62.66 0 0 5.2674 5.2674 87.349 0 0 0 2.922152515121219 45.83744784055135 2.922152515121219 9.208187539523749 0 1.7302046884880937 0 1.1747425010840047 0 + + [Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}QQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}Q[AG]{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG]Q{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[AG][AG]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]WWQ{I|L};[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}P{M(Oxidation (M))|F}[PS][KG];[Y{M(Oxidation (M))|F}]T{M(Oxidation (M))|F}[HV][YT]{I|L};{[QN]|[E{I|L}]|[KN]}[C(Carbamidomethyl (C))R]P{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.2674;4.4933;4.4933;3.7229;2.617;2.3928;2.136;0.0058329 +;-;-;-;-;-;-;- + 244 NaN NaN 135177.4 NaN 18223 4326 22547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22552 90.679 NaN 95926 35 0 15120 0.261 + 16867 LYEYNYLF 8 49 562.7674725280352 1123.5203921228704 2 562.7672119140625 MULTI HCD FTMS 0 0 0 22547 55717.9296875 0.9274857866107549 1 -0.02281951904296875 5 Unmodified _LYEYNYLF_ REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;REV__ENSG00000179532|ENST00000254579|DNHD1 26.88365393820708 0.39599352634412927 2 {I|L}YEE 4 -1 57.295 0 0 5.0996 0 0 0 586.2638033502561 586.2638033502561 34.02372200412145 0 0 0 0 0.4247425010840047 2 0.3494850021680094 0 {I|L}YEE 5.0996 - 33 + NaN NaN 102339.4 NaN 18224 4326 22547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22553 90.682 NaN 117310 35 0 12041 0.261 + 315 AFSPVLLQF 9 51 511.28958921936004 1020.5646255055201 2 511.2893371582031 MULTI HCD FTMS 0 0 0 22547 66529.3671875 0.7537643477961461 3 -0.05535888671875 6 Unmodified _AFSPVLLQF_ ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B 22.736283301280096 0.1639198954644489 2 {I|L}{I|L}Q{M(Oxidation (M))|F} 4 5 42.735 0 0 4.1874 0 0 501.2590357611826 0 501.2590357611826 0 37.250547101681875 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}Q{M(Oxidation (M))|F} 4.1874 + + 43 + NaN NaN 103196.9 NaN 18225 4326 22547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22555 90.687 NaN 781710 35 0 51333 0.327 -1 0 98 633.3693349814924 1264.7241170297848 2 633.369873046875 MULTI HCD FTMS 0 0 0 22554 627488.4375 0.2037581116097098 -22 0.5344619750976562 1 NaN NaN 2 {I|L}{M(Oxidation (M))|F}{I|L}MV 5 -1 20.56 0 0 1.6256 0 0 390.2647186916973 268.12384973697505 658.3885684286723 0 0 0 0 0 0.3252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F}{I|L}MV 1.6256 - 245 + NaN NaN 211237.6 NaN 18226 4327 22554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22556 90.691 NaN 578440 35 0 80431 0.263 -1 0 63 506.78868445897314 1011.5628159847463 2 506.78863525390625 MULTI HCD FTMS 0 0 0 22554 327731.09375 0.9598949802596022 1 -0.01628875732421875 2 NaN NaN 2 P{I|L}AMT{I|L} 6 -1 46.464 0 0 4.5933 0 0 367.2048512189469 0 367.2048512189469 0 33.95487546295484 0 0 0 1.7614393726401687 0 0 0 P{I|L}AMT{I|L} 4.5933 - 85 NaN NaN 175593.5 NaN 18227 4327 22554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22557 90.695 NaN 469970 35 0 119050 0.261 + 33226 YFEELITML 9 78 587.7887695612784 1173.5629861893567 2 587.7887573242188 MULTI HCD FTMS 0 0 0 22554 218623.625 0.7266900193650189 -7 0.17899322509765625 3 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 49.93300154707207 0.03166451819912738 2 E{I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 6 3 51.749 0 0 4.4096 0 0 439.17259413886876 0 439.17259413886876 0 30.94696122009003 0 0 0 1.774227503252014 0 0.28872548999643577 0 + E{I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 4.4096 + + 849 NaN NaN 156825.2 NaN 18228 4327 22554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22558 90.698 NaN 195620 35 0 28552 0.261 + 35238 YVNLFYVF 8 62 532.7744917810809 1063.5344306289617 2 532.774658203125 MULTI HCD FTMS 0 0 0 22554 69771.78125 1 0 0 4 Unmodified _YVNLFYVF_ REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF 14.581692164780916 0.48650662947107914 2 [YV]ED 4 -1 38.06 0 0 3.5786 0 0 0 554.2965181940061 554.2965181940061 19.8725709897451 0 0 0 0 0.4247425010840047 2 0 0 [YV]ED 3.5786 - 65 + NaN NaN 116872.8 NaN 18229 4327 22554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22560 90.703 NaN 3283700 35 0 594450 0.327 + 27644 TAISLFYEL 9 95 528.7843208890033 1055.5540888448065 2 528.7845458984375 MULTI HCD FTMS 0 0 0 22559 2205571 0.022011024099314536 29 -0.778564453125 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 188.57702930522862 4.893362302778831E-13 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 107.63 0 0 10.197 10.197 98.605 0 0 0 13.521825181113627 13.521825181113627 13.521825181113627 41.136218907515314 0 2.6549471895720984 1.3010299956639813 1.947621246364342 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S[Y{M(Oxidation (M))|F}]{I|L}E{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[TA]{I|L}S{I|L}[YE]{I|L}{M(Oxidation (M))|F};[TA]VV[YV]YE{I|L};{[QN]|[E{I|L}]|[KN]}K[YV]YE{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}S[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 10.197;6.2994;6.0475;5.8823;5.7961;4.7677;4.3292;4.0927;4.0093;3.92 +;-;-;-;-;-;-;-;-;- + 1454 NaN NaN 599047.8 NaN 18230 4328 22559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22561 90.708 NaN 145930 35 0 9734.5 0.261 + 32607 WLFKYLQFV 9 56 622.3475807826734 1242.6806086321467 2 622.3475952148438 MULTI HCD FTMS 0 0 0 22559 67443.328125 0.22715342414194367 34 -0.9228515625 2 Unmodified _WLFKYLQFV_ REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF 4.3292370932331545 0.3181982124262546 2 [YN]{I|L}RG[QP]HG 9 -1 24.28 0 0 1.9538 0 0 0 217.10576604956796 217.10576604956796 17.290325063701747 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L}RG[QP]HG 1.9538 - 234 NaN NaN 125462.2 NaN 18231 4328 22559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22562 90.711 NaN 134000 35 0 6144.4 0.264 -1 0 55 437.25743752493037 1308.7504831749911 3 437.2574462890625 MULTI HCD FTMS 0 0 0 22559 87800.5546875 0.470964562721989 -9 0.214813232421875 3 NaN NaN 2 P 1 -1 1.7827 0 0 0.13622 0 0 808.466957639638 400.2032564752563 1208.6702141148944 0 0 0 0 0 0 0 0 0 P 0.13622 - 2 + NaN NaN 127466.1 NaN 18232 4328 22559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22563 90.715 NaN 227280 35 0 72344 0.261 -1 0 49 503.10714178070435 502.09986531410436 1 503.1079406738281 MULTI HCD FTMS 0 0 0 22559 48841.0703125 0.396029892901991 19 -0.5007705688476562 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 132067.7 NaN 18233 4328 22559 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22565 90.719 NaN 802210 35 0 140760 0.327 + 31985 VYPLALYGF 9 58 521.78407813417 1041.55360333514 2 521.7841796875 MULTI HCD FTMS 0 0 0 22564 142751.359375 0.631180881481028 5 -0.1175537109375 1 Unmodified _VYPLALYGF_ ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1 56.04830969593885 0.023109620888794903 2 A{I|L}YG{M(Oxidation (M))|F} 5 4 47.493 0 0 4.5598 0 0 472.26846036814624 0 472.26846036814624 0 43.3116097541118 0 0 0 1.7059771852360797 0 0 0 + A{I|L}YG{M(Oxidation (M))|F} 4.5598 + + 233 + NaN NaN 208274.8 NaN 18234 4329 22564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22566 90.724 NaN 539680 35 0 107260 0.261 + 12433 KPTPATVASR 10 85 514.2985549438317 1026.5825569544634 2 514.2986450195312 MULTI HCD FTMS 0 0 0 22564 185335.234375 0.7166917145676429 -1 0.0162506103515625 2 Unmodified _KPTPATVASR_ ENST00000182527.3_1_6:52364724-52364970:-|nuORF 4.897010918128616 0.4493830473644964 2 {M(Oxidation (M))|F} 1 10 15.485 0 0 1.5084 0 0 861.5039874737978 0 861.5039874737978 0 3.8907562519182193 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5084 - 43 + NaN NaN 171993.7 NaN 18235 4329 22564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22567 90.727 NaN 59022 35 0 6587.6 0.261 + 26410 STCCLKYY 8 36 490.71397054922846 979.413388165257 2 490.71380615234375 MULTI HCD FTMS 0 0 0 22564 35940.76171875 0.25197928195270164 7 -0.16664886474609375 3 Unmodified _STCCLKYY_ ENSG00000275152|ENST00000611905|CCL16 2.577480529830294 0.5381683276125971 2 {I|L} 1 7 10.044 0 0 1.0255 0 0 155.09704945427114 708.2155855768186 863.3126350310897 0 0 0 0 0 0.3054621874040891 0 0 0 + {I|L} 1.0255 + + 4 + NaN NaN 93046.7 NaN 18236 4329 22564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22568 90.731 NaN 74152 35 0 7393.4 0.261 + 10025 IEYEIIWKD 9 39 604.8137478809075 1207.612942828615 2 604.8134765625 MULTI HCD FTMS 0 0 0 22564 5983.966796875 0.00989432233323106 14 -0.37325286865234375 4 Unmodified _IEYEIIWKD_ REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1 6.723162845929126 0.3000504726104499 2 E 1 -1 11.99 0 0 0.99284 0 0 673.36997515459 402.16657434635005 1075.53654950094 0 0 0 0 0 0.5 0 0 0 E 0.99284 + + 6 + NaN NaN 94681.4 NaN 18237 4329 22564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22569 90.734 NaN 116060 35 0 13921 0.261 + 5686 FPAEFAMYL 9 49 544.7608849109746 1087.507216888749 2 544.7597045898438 MULTI HCD FTMS 0 0 0 22564 35697.78125 0.41367916777382396 -9 0.2115325927734375 5 Unmodified _FPAEFAMYL_ ENSG00000113712|ENST00000377843|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;nc|ENSG00000113712|P48729-2|CSNK1A1;nc|ENSG00000113712|P48729-3|CSNK1A1 11.640296217721598 0.25978676193971967 2 Y{I|L} 2 7 25.969 0 0 2.3879 0 0 793.3461044543686 0 793.3461044543686 0 0 0 0 0 0.5 0 0 0 + Y{I|L} 2.3879 + + 27 NaN NaN 101605.6 NaN 18238 4329 22564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22571 90.739 NaN 440580 35 0 58718 0.327 -1 GFCIAMVVSF 10 68 565.7700526280007 1129.5255523228013 2 566.2884521484375 MULTI HCD FTMS 0 0 0 22570 13721.021484375 0.5055222618203474 -3 0.05208587646484375 1 Carbamidomethyl (C) _GFC(Carbamidomethyl (C))IAMVVSF_ ENSG00000171561|ENST00000641541|OR2AT4 15.847184025352803 0.36288280428275715 2 EA{I|L}D{M(Oxidation (M))|F}KP{M(Oxidation (M))|F} 8 -1 59.207 0 0 5.2418 0 0 164.03612673752224 0 164.03612673752224 0 40.25026231013648 0 0 0 0 0 1.4119543704721593 0.3252574989159953 EA{I|L}D{M(Oxidation (M))|F}KP{M(Oxidation (M))|F} 5.2418 - 1247 + NaN NaN 156974.1 NaN 18239 4330 22570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22572 90.743 NaN 153410 35 0 30197 0.261 -1 ISLMLMVYIC 10 43 637.8118795950836 NaN 0 637.812744140625 PEAK HCD FTMS 0 0 0 22570 6833.751953125 0.0851279751280637 20 -0.5468215942382812 2 Carbamidomethyl (C),2 Oxidation (M) _ISLM(Oxidation (M))LM(Oxidation (M))VYIC(Carbamidomethyl (C))_ ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 3.944395688203298 0.33680843299986807 2 WET 3 -1 11.682 0 0 0.91727 0 0 313.1837434657546 541.2403658502561 854.4241093160108 0 0 0 0 0 0 0 0 0 WET 0.91727 - 16 + NaN NaN 112342 NaN 18240 4330 22570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22574 90.748 NaN 1570700 35 0 555790 0.327 -1 0 55 405.11861942977845 808.2226859263569 2 405.1190490722656 MULTI HCD FTMS 0 0 0 22573 1303084.625 0.4768759462907142 9 -0.2489776611328125 1 NaN NaN 2 K 1 -1 2.4743 0 0 0.30613 0 0 494.1141528579858 182.99190698795158 677.1060598459374 0 0 0 0 0 0 0 0 0 K 0.30613 - 6 + NaN NaN 343430.2 NaN 18241 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22575 90.753 NaN 425460 35 0 13609 0.261 -1 0 99 619.8696707185969 1237.7247885039938 2 619.8695068359375 MULTI HCD FTMS 0 0 0 22573 496760.90625 0.264569475890321 31 -0.8774490356445312 2 NaN NaN 2 Y{I|L}{M(Oxidation (M))|F} 3 -1 7.703 0 0 0.62235 0 0 132.20895992385255 679.2741793268186 811.4831392506712 0 0 0 0 0 0 0 0 0 Y{I|L}{M(Oxidation (M))|F} 0.62235 - 262 + NaN NaN 157832.3 NaN 18242 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22576 90.756 NaN 452270 35 0 57458 0.262 -1 0 74 539.7753191711168 1077.5360854090336 2 539.7756958007812 MULTI HCD FTMS 0 0 0 22573 436339.4375 0.022576656031468485 31 -0.8774490356445312 3 NaN NaN 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}Y 7 -1 77.589 0 0 7.2006 0 0 0 279.09494959049067 279.09494959049067 41.91413558983125 0 0 0 0 2.1571406706489746 1.3979400086720375 0.7302046884880937 0 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}Y 7.2006 - 473 + NaN NaN 159709.4 NaN 18243 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22577 90.76 NaN 411830 35 0 65666 0.261 + 35300 YWEPAEVFL 9 62 577.2816941646278 1152.5488353960554 2 577.2816772460938 MULTI HCD FTMS 0 0 0 22573 217253.1875 1 0 0 4 Unmodified _YWEPAEVFL_ ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 30.636539890814138 0.10832830463492794 2 EV{M(Oxidation (M))|F}{I|L} 4 5 44.24 0 0 3.8385 0 0 646.274217674025 0 646.274217674025 0 10.07007180900061 0 0 0 1.3807196863200843 0 0 0 + EV{M(Oxidation (M))|F}{I|L} 3.8385 + + 198 NaN NaN 170025.4 NaN 18244 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22578 90.763 NaN 460480 35 0 28790 0.261 + 10347 ILRHHVNR 8 80 522.8122071245186 1043.6098613158372 2 522.8121337890625 MULTI HCD FTMS 0 0 0 22573 193636.09375 1 0 0 5 Unmodified _ILRHHVNR_ ENSG00000185753|ENST00000327877|CXorf38;ENST00000378421.1_2_X:40499458-40506772:-|nuORF;ENST00000378426.5_2_X:40498361-40506375:-|nuORF;nc|nan|Q8TB03-3|CXorf38 2.302733041254933 0.5385759549224092 2 V{I|L} 2 7 17.078 0 0 1.6365 0 0 813.4278431623062 0 813.4278431623062 0 13.58349385648225 0 0 0 0 0 0 0 V{I|L} 1.6365 - 11 NaN NaN 180534 NaN 18245 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22579 90.766 NaN 141490 35 0 18224 0.261 + 14410 LEKVRREHK 9 57 597.856590319847 1193.6986277064939 2 597.857421875 MULTI HCD FTMS 0 0 0 22573 61711.89453125 0.44441097864317397 -6 0.114013671875 6 Unmodified _LEKVRREHK_ REV__ENSG00000078814|ENST00000262873|MYH7B;REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000264424|ENST00000255381|MYH4;REV__MYH2|p.R1847H|1|0.2|ENSG00000125414|chr17:10523345-10523345|C/T|missense_variant;REV__nc|ENSG00000078814|A7E2Y1-3|MYH7B;REV__nc|ENSG00000078814|A7E2Y1|MYH7B 1.6526216038709556 0.33848895094777925 2 VQ 2 -1 7.0783 0 0 0.59298 0 0 130.22238366528137 833.3244722955686 963.54685596085 0 0 0 0 0 0 0 0 0 VQ 0.59298 - 45 + NaN NaN 114855.2 NaN 18246 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22580 90.77 NaN 80829 35 0 7558.8 0.261 + 28634 TRGMRWGEQ 9 48 560.7699389573114 1119.5253249814227 2 561.2694091796875 MULTI HCD FTMS 0 0 0 22573 31970.609375 0.23800879418101178 18 -0.5143356323242188 7 Unmodified _TRGMRWGEQ_ ENST00000598629.5_1_19:58426733-58427871:-|nuORF 4.897010918128616 0.31389406404703984 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 8 17.959 0 0 1.6041 0 0 807.3784571609134 0 807.3784571609134 0 7.272437815030626 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6041 - 26 + NaN NaN 100292.4 NaN 18247 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22581 90.773 NaN 65133 35 0 6238 0.261 + -1 LYEATKPMLQ 10 47 605.3143082517272 NaN 0 605.7545166015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _LYEATKPM(Oxidation (M))LQ_ REV__tr|U7T3H6|U7T3H6_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00281PE=3SV=1 4.897010918128616 0.3359931263921593 2 {I|L} 1 -1 4.6041 0 0 0.38094 0 0 131.14716145372773 961.3429659479124 1092.4901274016402 0 0 0 0 0 0 0 0 0 {I|L} 0.38094 + + 1 + NaN NaN 96270.1 NaN 18248 4331 22573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22583 90.778 NaN 969610 35 0 344260 0.327 + 26791 SYIALPLTL 9 49 495.7972950477109 989.5800371622219 2 495.7972412109375 MULTI HCD FTMS 0 0 0 22582 347830.3125 0.2131844027645058 5 -0.1411590576171875 1 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 103.74828524460852 0.00396301343438984 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}[{I|L}P]T{I|L} 9 0 + 59.702 0 0 6.033 6.033 92.26 0 0 0 7.016675202793721 7.016675202793721 7.016675202793721 29.776296993281402 0 2.110924374808178 0 0.75 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}A{I|L}[{I|L}P]T{I|L};[{I|L}T][YG]{I|L}[{I|L}P]T{I|L} 6.033;3.024 +;- + 103 NaN NaN 228624.1 NaN 18249 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22584 90.782 NaN 623340 35 0 29677 0.261 -1 0 85 611.3564756461734 1220.6983983591467 2 611.3563232421875 MULTI HCD FTMS 0 0 0 22582 625312.4375 0.17109639056865297 43 -1.1921615600585938 2 NaN NaN 2 Q 1 -1 7.2185 0 0 0.59134 0 0 678.4045390171682 411.2233644455565 1089.6279034627246 0 0 0 0 0 0.5 0 0 0 Q 0.59134 - 156 + NaN NaN 192186.5 NaN 18250 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22585 90.786 NaN 885220 35 0 119260 0.261 + 28838 TVFPYEPFL 9 84 556.7869682555756 NaN 0 556.7869262695312 PEAK HCD FTMS 0 0 0 22582 229697.203125 0.34790340962177824 10 -0.281982421875 3 Unmodified _TVFPYEPFL_ ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C;UBE3C-PTPRN2|1|fusion 65.23502041540118 0.015547834519309937 2 SE{I|L}{I|L}[RP]S 7 8 36.124 0 0 3.2498 0 0 164.0597630718949 162.05617700748283 326.11594007937776 0 0 0 0 0 0.28872548999643577 0 1.6861818737241734 0.3054621874040891 SE{I|L}{I|L}[RP]S 3.2498 - 520 + NaN NaN 229373 NaN 18251 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22586 90.789 NaN 185090 35 0 31652 0.261 + 12199 KKRQKNYYK 9 59 628.3691939060299 NaN 0 628.383056640625 PEAK HCD FTMS 0 0 0 22582 8127.314453125 1 0 0 4 Unmodified _KKRQKNYYK_ ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant 4.3292370932331545 0.2742679634796037 2 {I|L}{I|L} 2 9 9.464 0 0 0.75427 0 0 686.4514482595222 339.0923250787719 1025.5437733382942 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.75427 - 11 + NaN NaN 129318.9 NaN 18252 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22587 90.793 NaN 320030 35 0 101660 0.263 + 11226 IYLDGIITI 9 52 510.80250363447465 1019.5904543357493 2 510.80267333984375 MULTI HCD FTMS 0 0 0 22582 59282.00390625 0.02048166879405554 -8 0.16614532470703125 5 Unmodified _IYLDGIITI_ ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E 39.957323273324995 0.06554068735427583 2 {I|L}T{I|L} 3 6 35.445 0 0 3.4764 0 0 674.3636368307249 0 674.3636368307249 0 5.735680527055962 0 0 0 0.9247425010840047 0 0 0 + {I|L}T{I|L} 3.4764 + + 56 NaN NaN 132834.8 NaN 18253 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22588 90.796 NaN 136130 35 0 9382 0.261 + 12228 KLELHLFMLSG 11 59 644.3604176827344 1286.7062824322686 2 644.3604125976562 MULTI HCD FTMS 0 0 0 22582 59605.75 0.2664522067426077 -15 0.34198760986328125 6 Unmodified _KLELHLFMLSG_ ENSG00000136802|ENST00000372600|LRRC8A 2.9952420565917617 0.40578455234410343 2 {I|L} 1 10 5.4846 0 0 0.42625 0 0 370.22631524652485 800.3854464166624 1170.6117616631873 0 0 0 0 0 0 0 0 0 + {I|L} 0.42625 + + 35 + NaN NaN 126309 NaN 18254 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22589 90.799 NaN 89029 35 0 8790.8 0.262 + 31780 VYLRRELI 8 44 531.3249594396401 1060.6353659460801 2 531.324462890625 MULTI HCD FTMS 0 0 0 22582 16983.775390625 0.16161044397160612 1 -0.0328521728515625 7 Unmodified _VYLRRELI_ ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.37519 0 0 377.3081697564301 533.2356488468703 910.5438186033005 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.37519 - 5 + NaN NaN 102463.4 NaN 18255 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22590 90.803 NaN 313430 35 0 36338 0.261 + -1 TGKQMEVDKE 10 73 590.7773725261746 1179.5401921191492 2 590.789306640625 MULTI HCD FTMS 0 0 0 22582 7001.4033203125 0.1988941228690719 -1 0.02927398681640625 8 Oxidation (M) _TGKQM(Oxidation (M))EVDKE_ REV__ENSG00000187959|ENST00000344935|CPSF4L 18.373094154950223 0.33925629317698053 2 E{[RE]|[WV]}{M(Oxidation (M))|F}D{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9 -1 + 51.845 0 0 4.3954 4.3954 81.569 0 0 0 0.2237030067185941 0.2237030067185941 0.2237030067185941 0.2237030067185941 0 0.3807196863200844 0 0.2614393726401688 0.6549471895720984 E{[RE]|[WV]}{M(Oxidation (M))|F}D{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}{I|L}D[NG]WW;[YN]{I|L}[NG]D{I|L}WW;{I|L}[WD]{M(Oxidation (M))|F}D{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}P]{M(Oxidation (M))|F}D{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};E[R{M(Oxidation (M))|F}]AD{M(Oxidation (M))|F}[{I|L}P]W;{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}P]{M(Oxidation (M))|F}D{I|L}WW;[YN]{I|L}{I|L}[C(Carbamidomethyl (C))C][{I|L}P]{[QG]|[NA]};{[CT]|[{M(Oxidation (M))|F}G]}[VS]{I|L}D[NG]WW;{[CT]|[{M(Oxidation (M))|F}G]}W{I|L}D[NG][VS]W 4.3954;4.3764;4.1174;3.8028;3.6352;3.102;2.8912;2.4371;2.4068;2.4068 -;-;-;-;-;-;-;-;-;- 656 + NaN NaN 139473.3 NaN 18256 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22591 90.806 NaN 126290 35 0 8592.7 0.261 + 3603 EKLHKRGVR 9 69 561.845916191102 1121.677279449004 2 561.8455200195312 MULTI HCD FTMS 0 0 0 22582 50982.0859375 0.23575975674107727 -8 0.16614532470703125 9 Unmodified _EKLHKRGVR_ ENSG00000180881|ENST00000699294|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5-3|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2 1.844237919475145 0.33703635659052655 2 D 1 9 8.4113 0 0 0.74989 0 0 105.081367788371 898.5237424587681 1003.6051102471391 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.74989 - 33 + NaN NaN 104740.3 NaN 18257 4332 22582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22593 90.811 NaN 857530 35 0 41886 0.326 -1 0 127 641.8826105638228 1281.7506681944456 2 641.8825073242188 MULTI HCD FTMS 0 0 0 22592 541300.625 0.3280290517173139 -16 0.37483978271484375 1 NaN NaN 2 W 1 -1 15.485 0 0 1.2081 0 0 1077.6607156571392 0 1077.6607156571392 0 6.725490200071285 0 0 0 0 0 0 0 W 1.2081 - 255 + NaN NaN 221918.3 NaN 18258 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22594 90.815 NaN 409350 35 0 59476 0.262 -1 0 63 526.296947782167 1050.5793426311338 2 526.2962036132812 MULTI HCD FTMS 0 0 0 22592 101922.3359375 0.0708138294929679 11 -0.3113555908203125 2 NaN NaN 2 {I|L}{I|L}NT{M(Oxidation (M))|F} 5 -1 57.805 0 0 5.5022 0 0 444.24140425398383 0 444.24140425398383 0 44.61758134947864 0 0 0 1.6307196863200843 0 0.805462187404089 0 {I|L}{I|L}NT{M(Oxidation (M))|F} 5.5022 - 131 + NaN NaN 172046.5 NaN 18259 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22595 90.819 NaN 199400 35 0 27453 0.261 + 10985 IYEEFLAAF 9 41 551.7769337750536 1101.5393146169072 2 551.7769165039062 MULTI HCD FTMS 0 0 0 22592 87876.9765625 0.24654935115228982 6 -0.1639862060546875 3 Unmodified _IYEEFLAAF_ ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP 42.09456458481378 0.05572955244001856 2 {M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 5 4 62.206 0 0 5.6472 0 0 534.2351075099804 0 534.2351075099804 0 62.2062251842808 0 0 0 2.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}AA{M(Oxidation (M))|F} 5.6472 + + 83 + NaN NaN 127737.5 NaN 18260 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22596 90.822 NaN 261620 35 0 16925 0.263 -1 0 64 422.5819131158917 1264.7239099478752 3 422.5817565917969 MULTI HCD FTMS 0 0 0 22592 116677.140625 0.27457088973941024 -15 0.358612060546875 4 NaN NaN 2 N{[HG]|PP}N 4 -1 16.414 0 0 1.2979 0 0 824.4653187482437 0 824.4653187482437 0 8.315468932362577 0 0 0 0.9247425010840047 0 0 0 N{[HG]|PP}N 1.2979 - 13 NaN NaN 142961.3 NaN 18261 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22597 90.825 NaN 504530 35 0 66819 0.261 + 26737 SYDVFQLEF 9 68 574.2690857084168 1146.5236184836335 2 574.2694702148438 MULTI HCD FTMS 0 0 0 22592 217922.546875 0.10135563525420528 -7 0.146636962890625 5 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 133.0521902211835 0.0004198702180815479 2 {[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 9 0 + 99.875 0 0 8.7111 8.7111 94.171 0 0 0 4.137342758552691 81.82766571201022 4.137342758552691 10.956837818197798 0 2.8494850021680094 0 1.9291746928241125 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QC]|[C(Carbamidomethyl (C))A]}HQ{I|L}E{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QC]|[C(Carbamidomethyl (C))A]}H[AG]{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[MT]HQKN{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}{[QC]|[C(Carbamidomethyl (C))A]}HQKN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DV{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[VS]V{M(Oxidation (M))|F}V{[CP]|[EA]}{M(Oxidation (M))|F} 8.7111;7.7555;7.6032;6.6475;5.7918;4.9887;4.9819;4.6348;4.3439;4.2793 +;-;-;-;-;-;-;-;-;- + 893 NaN NaN 182481.8 NaN 18262 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22598 90.829 NaN 55258 35 0 16674 0.263 -1 MCTLRPMRML 10 29 452.88074774496357 NaN 0 452.8806457519531 PEAK HCD FTMS 0 0 0 22592 11796.2763671875 0.4776389944651168 1 -0.026275634765625 6 Carbamidomethyl (C),3 Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))TLRPM(Oxidation (M))RM(Oxidation (M))L_ ENST00000505068.5_1_4:71690058-71691144:-|nuORF 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97262.9 NaN 18263 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22599 90.832 NaN 100100 35 0 16086 0.261 + -1 FSPMCFYS 8 48 499.1933232241646 996.3720935151292 2 499.1935119628906 MULTI HCD FTMS 0 0 0 22592 17117.2890625 0.11413826641099013 17 -0.47509002685546875 7 Oxidation (M) _FSPM(Oxidation (M))CFYS_ REV__ENST00000445132.2_1_3:46395384-46395600:+|nuORF 0.6903765706972694 0.5409681170271811 2 E 1 -1 3.9794 0 0 0.39939 0 0 564.1150267200105 300.1846102350219 864.2996369550324 0 0 0 0 0 0 0 0 0 E 0.39939 - 1 + NaN NaN 114988.1 NaN 18264 4333 22592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22601 90.837 NaN 1744200 35 0 103720 0.327 -1 0 116 633.3693349814924 1264.7241170297848 2 633.3695068359375 MULTI HCD FTMS 0 0 0 22600 1415128.125 0.45952055401146635 -15 0.3486175537109375 1 NaN NaN 2 WEN{[HG]|PP}{[SA]|[TG]} 7 -1 9.9004 0 0 0.78281 0 0 465.33552748847814 0 465.33552748847814 0 1.2282696247046943 0 0 0 0.6861818737241735 0 0.75 0 WEN{[HG]|PP}{[SA]|[TG]} 0.78281 - 312 NaN NaN 380529.8 NaN 18265 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22602 90.841 NaN 458380 35 0 37496 0.261 -1 0 99 553.3325404491379 1104.6505279650758 2 553.3328247070312 MULTI HCD FTMS 0 0 0 22600 249978.8125 0.6231936175825299 -3 0.08840179443359375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.0854 0 0 939.5715770146836 0 939.5715770146836 0 -0.36150500836482635 -0.36150500836482635 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0854 - 593 + NaN NaN 182110 NaN 18266 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22603 90.845 NaN 370730 35 0 43664 0.261 + 29940 VFFEVSPVSF 10 76 579.2970532297528 1156.5795535263055 2 579.2973022460938 MULTI HCD FTMS 0 0 0 22600 107743.421875 0.37553144538112776 7 -0.1867523193359375 3 Unmodified _VFFEVSPVSF_ ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1 27.628801355627647 0.2527626205058048 2 DQ{M(Oxidation (M))|F}VS[VP]S{M(Oxidation (M))|F} 9 3 40.033 0 0 3.4614 0 0 132.101600500718 0 132.101600500718 0 32.5860981192254 0 0 0 1.5 0 0 0.6307196863200843 DQ{M(Oxidation (M))|F}VS[VP]S{M(Oxidation (M))|F} 3.4614 - 709 + NaN NaN 167987 NaN 18267 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22604 90.848 NaN 152160 35 0 20940 0.261 -1 0 46 506.78868445897314 1011.5628159847463 2 506.789306640625 MULTI HCD FTMS 0 0 0 22600 55897.46875 0.16371867267276338 8 -0.2228546142578125 4 NaN NaN 2 {I|L}AMT{I|L} 5 -1 43.984 0 0 4.3482 0 0 464.2601374386399 0 464.2601374386399 0 38.767959391884546 0 0 0 1.3807196863200843 0 0 0 {I|L}AMT{I|L} 4.3482 - 35 NaN NaN 122315.8 NaN 18268 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22605 90.852 NaN 203770 35 0 17784 0.261 + 32358 VYVLTNLAYF 10 67 601.8265663600953 1201.6385797869905 2 602.3277587890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 67.83816525789305 0.020146919733137328 2 [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F} 10 0 + 78.827 0 0 6.56 6.56 91.154 0 0 0 7.269987279362624 61.38001150193125 7.269987279362624 12.659389507179355 0 2.6861818737241734 0 0.28872548999643577 0.3494850021680094 + + [YV]V{I|L}TN{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TGG{I|L}AY{M(Oxidation (M))|F};[YV]V{I|L}TN{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F};[YV]V{I|L}TGG{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F};[YV]{M(Oxidation (M))|F}[{I|L}T][KG]D{I|L}{M(Oxidation (M))|F} 6.56;5.5065;3.5421;2.7794;1.5564 +;-;-;-;- + 339 NaN NaN 119761 NaN 18269 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22606 90.855 NaN 109840 35 0 10641 0.261 + -1 HNPWTYECT 9 53 604.2460131439688 1206.4774733547374 2 604.7486572265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _HNPWTYEC(Carbamidomethyl (C))T_ REV__ENSG00000136286|ENST00000258787|MYO1G;REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF;REV__ENST00000483585.5_1_7:45002340-45005995:-|nuORF 1.844237919475145 0.33703635659052655 2 P 1 -1 7.034 0 0 0.58302 0 0 575.1653528486812 531.2209566705686 1106.3863095192498 0 0 0 0 0 0.3054621874040891 0 0 0 P 0.58302 + + 12 + NaN NaN 107010.2 NaN 18270 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22607 90.858 NaN 50909 35 0 3409 0.261 + -1 EYIFVGGLCC 10 41 580.7581692767477 1159.5017856202953 2 582.2645874023438 MULTI HCD FTMS 0 0 0 22600 6378.04541015625 0.0706120362070242 -11 0.26061248779296875 7 Carbamidomethyl (C) _EYIFVGGLC(Carbamidomethyl (C))C_ REV__ENST00000419783.1_2_3:49394673-49394790:-|nuORF 4.3292370932331545 0.45238836448149167 2 Y{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 4 -1 10.802 0 0 0.93161 0 0 0 604.2151583307249 604.2151583307249 6.822581265925436 0 0 0 0 0 0 0 0 Y{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 0.93161 - 9 + NaN NaN 100269 NaN 18271 4334 22600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22609 90.863 NaN 1677500 35 0 108120 0.327 -1 0 118 633.3693349814924 1264.7241170297848 2 633.3695068359375 MULTI HCD FTMS 0 0 0 22608 1319301 0.4284035598740443 -14 0.3291168212890625 1 NaN NaN 2 D[{M(Oxidation (M))|F}V]N{[HG]|PP}N 7 -1 13.592 0 0 1.0747 0 0 463.32922454837905 0 463.32922454837905 0 3.389924694942632 0 0 0 0.5 0 1.0387254899964358 0 D[{M(Oxidation (M))|F}V]N{[HG]|PP}N 1.0747 - 443 NaN NaN 343245.8 NaN 18272 4335 22608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22610 90.868 NaN 1517900 35 0 243660 0.262 + 27645 TAISLFYEL 9 73 528.7843208890033 1055.5540888448065 2 528.7846069335938 MULTI HCD FTMS 0 0 0 22608 666289.25 0.006649393167966122 36 -0.9985504150390625 2 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 158.20266083822983 1.5497770410472245E-07 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 90.416 0 0 8.5658 8.5658 97.291 0 0 0 5.6424927368725974 58.44766171259536 5.6424927368725974 45.88554074136319 0 2.610924374808178 0 1.872363747448347 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[QN]|[E{I|L}]|[KN]}K[YV]YE{I|L};[TA]{I|L}S{I|L}EY{M(Oxidation (M))|F}{I|L};[TA]VV[YV]YE{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]{I|L}S[YE]{I|L}{M(Oxidation (M))|F}{I|L};[TA]{I|L}[YT]D{M(Oxidation (M))|F}{I|L}{I|L};[YE]{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[TA]{I|L};[YE]{M(Oxidation (M))|F}{I|L}{[TV]|[{I|L}S]}[TA]{I|L};[TA]{I|L}[YT]D{I|L}{M(Oxidation (M))|F}{I|L} 8.5658;4.2187;4.0401;3.6723;3.1395;2.7133;2.0749;1.9819;1.9069;1.6488 +;-;-;-;-;-;-;-;-;- + 722 NaN NaN 317689.4 NaN 18273 4335 22608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22611 90.871 NaN 499260 35 0 141660 0.261 + 33227 YFEELITML 9 59 587.7887695612784 1173.5629861893567 2 587.7890014648438 MULTI HCD FTMS 0 0 0 22608 237353.125 0.7889456000127971 1 -0.02291107177734375 3 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 65.23502041540118 0.010630085227462206 2 E{I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 6 3 70.196 0 0 5.9814 0 0 439.17402846504064 0 439.17402846504064 0 44.024947271955455 0 0 0 2.274227503252014 0 0.6307196863200843 0 + E{I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 5.9814 + + 171 NaN NaN 165007.2 NaN 18274 4335 22608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22612 90.875 NaN 432030 35 0 55066 0.261 + 28440 TPKGSALRTP 10 70 514.2985549438317 1026.5825569544634 2 514.298583984375 MULTI HCD FTMS 0 0 0 22608 182292.078125 0.7049238233845947 5 -0.13439178466796875 4 Unmodified _TPKGSALRTP_ ENSG00000125675|ENST00000620443|GRIA3 8.155526934196011 0.43213520406898465 2 VA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AV{M(Oxidation (M))|F} 8 9 35.923 0 0 3.4992 0 0 164.12071721012586 0 164.12071721012586 0 30.438134727926 0 0 0 0.3807196863200844 0 0 0 VA{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AV{M(Oxidation (M))|F} 3.4992 - 136 + NaN NaN 147015.9 NaN 18275 4335 22608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22613 90.878 NaN 134370 35 0 15640 0.261 + 34097 YNLVLMLQLH 10 58 622.3475807826734 1242.6806086321467 2 622.3479614257812 MULTI HCD FTMS 0 0 0 22608 43335.73046875 0.14595749998315968 41 -1.1330642700195312 5 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 2 [YN]{I|L} 3 -1 24.437 0 0 1.9665 0 0 0 849.4678150132592 849.4678150132592 13.979400086720373 0 0 0 0 0 1.6989700043360187 0 0 [YN]{I|L} 1.9665 + + 24 NaN NaN 108657.9 NaN 18276 4335 22608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22614 90.881 NaN 224510 35 0 22044 0.262 -1 LFPRCQPF 8 63 532.7709312969491 NaN 0 532.7847900390625 PEAK HCD FTMS 0 0 0 22608 21641.55859375 0.9596009825613036 1 -0.02291107177734375 6 Carbamidomethyl (C) _LFPRC(Carbamidomethyl (C))QPF_ ENST00000495270.1_1_9:130698003-130699012:-|nuORF 14.581692164780916 0.38795613832665576 2 A 1 -1 10.485 0 0 0.98583 0 0 131.1025777618475 858.3695653400297 989.4721431018772 0 0 0 0 0 0.5 0 0 0 A 0.98583 - 11 + NaN NaN 126697.4 NaN 18277 4335 22608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22616 90.886 NaN 823120 35 0 108070 0.327 + 31560 VYGVFSIAEF 10 89 566.2894968401141 1130.5644407470281 2 566.2893676757812 MULTI HCD FTMS 0 0 0 22615 304990.90625 0.5599380492691328 2 -0.0591888427734375 1 Unmodified _VYGVFSIAEF_ ENSG00000129625|ENST00000379638|REEP5;ENST00000497856.6_1_5:112228472-112256990:-|nuORF;nc|ENSG00000129625|Q00765-2|REEP5 120.45040980043947 3.829617958141663E-05 2 [YK]V{M(Oxidation (M))|F}D{I|L}AE{M(Oxidation (M))|F} 9 3 + 87.704 0 0 7.7576 7.7576 87.735 0 0 0 1.5933415172585086 3.0837786480276463 1.5933415172585086 1.5933415172585086 0 2.2302046884880937 0 1.610924374808178 0.6139829889124311 [YK]V{M(Oxidation (M))|F}D{I|L}AE{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}D{I|L}AE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]KYD{I|L}AE{M(Oxidation (M))|F};[TA]{M(Oxidation (M))|F}V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{M(Oxidation (M))|F};[YV]GV{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{M(Oxidation (M))|F};[TA]V{M(Oxidation (M))|F}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{M(Oxidation (M))|F};[TA]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[VS]{I|L}AE{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}T]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{M(Oxidation (M))|F};[YV]G{M(Oxidation (M))|F}[VS]{I|L}AE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][TA]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}AE{M(Oxidation (M))|F} 7.7576;7.6166;6.8692;6.787;6.7013;6.365;5.9228;5.8416;5.837;5.6158 -;-;-;-;+;-;-;-;-;- + 3308 NaN NaN 222902.5 NaN 18278 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22617 90.891 NaN 769640 35 0 271740 0.264 -1 0 42 405.11861942977845 808.2226859263569 2 405.1189880371094 MULTI HCD FTMS 0 0 0 22615 175313.203125 0.06415749831864571 14 -0.39971923828125 2 NaN NaN 2 K 1 -1 1.9897 0 0 0.24618 0 0 494.11421383466586 182.99155603580314 677.105769870469 0 0 0 0 0 0 0 0 0 K 0.24618 - 5 + NaN NaN 202152.9 NaN 18279 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22618 90.894 NaN 192560 35 0 7160.3 0.261 -1 0 81 619.8696707185969 1237.7247885039938 2 619.8695678710938 MULTI HCD FTMS 0 0 0 22615 161342.265625 0.08592914240695285 36 -1.0052413940429688 3 NaN NaN 2 D 1 -1 5.2423 0 0 0.42354 0 0 149.11025898034546 970.5451754205686 1119.6554344009141 0 0 0 0 0 0.3252574989159953 0 0 0 D 0.42354 - 83 + NaN NaN 124049.1 NaN 18280 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22619 90.898 NaN 863420 35 0 80891 0.261 + 17516 LYTQFMDR 8 85 537.2581593500743 1072.5017657669484 2 537.2584228515625 MULTI HCD FTMS 0 0 0 22615 274609.8125 0.18065331205502821 -4 0.10822296142578125 4 Unmodified _LYTQFMDR_ ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;RAD54L2|p.E640Afs*29|1|0.5|ENSG00000164080|chr3:51639476-51639477|GA/-|frameshift_variant;RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant 15.847184025352803 0.47719562709667024 2 {I|L}Y[EP]{M(Oxidation (M))|F} 5 5 26.72 0 0 2.4914 0 0 0 420.1773096234293 420.1773096234293 5.293774815719203 0 0 0 0 0 1.3010299956639813 0.3252574989159953 0 {I|L}Y[EP]{M(Oxidation (M))|F} 2.4914 - 231 + NaN NaN 219298.2 NaN 18281 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22620 90.901 NaN 212350 35 0 62428 0.261 + 10620 IPQLLEAVL 9 35 498.3105602983143 994.6065676634286 2 498.310546875 MULTI HCD FTMS 0 0 0 22615 46163.8046875 0.1010956682770663 -5 0.1374969482421875 5 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 17.11289562659939 0.2125047172822487 2 EAV{I|L} 4 5 46.938 0 0 4.7193 0 0 564.3626305972138 0 564.3626305972138 0 38.86623162815269 0 0 0 1.5 0 0 0 + EAV{I|L} 4.7193 + + 24 NaN NaN 120664.9 NaN 18282 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22621 90.904 NaN 182200 35 0 8814.4 0.261 + 32359 VYVLTNLAYF 10 75 601.8265663600953 1201.6385797869905 2 602.3284912109375 MULTI HCD FTMS 0 0 0 22615 7080.68994140625 0.010103762077314074 17 -0.47505950927734375 6 Unmodified _VYVLTNLAYF_ ENSG00000103257|ENST00000261622|SLC7A5 32.037481411007896 0.2145045983280644 2 A{I|L}NT{I|L}PV{M(Oxidation (M))|F} 8 7 41.412 0 0 3.4463 0 0 328.14204604316564 0 328.14204604316564 0 25.214431721207404 0 0 0 1.610924374808178 0 0 0 A{I|L}NT{I|L}PV{M(Oxidation (M))|F} 3.4463 - 399 NaN NaN 108437.9 NaN 18283 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22622 90.908 NaN 145210 35 0 12245 0.261 -1 MPATVFMLF 9 41 544.7608849109746 1087.507216888749 2 545.2628784179688 MULTI HCD FTMS 0 0 0 22615 6452.7421875 0.1513782931543078 -3 0.07537078857421875 7 2 Oxidation (M) _M(Oxidation (M))PATVFM(Oxidation (M))LF_ ENSG00000109133|ENST00000504986|TMEM33 21.74664581756881 0.17247014374749275 2 MY{I|L} 3 -1 31.198 0 0 2.8688 0 0 662.307420799025 0 662.307420799025 0 -0.22878745280337398 -0.22878745280337398 0 0 0.5 0 0 0 MY{I|L} 2.8688 - 41 NaN NaN 114289.4 NaN 18284 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22623 90.911 NaN 130040 35 0 27192 0.261 + 14221 LAVLDWEL 8 47 479.7658970423816 957.5172411515632 2 479.76593017578125 MULTI HCD FTMS 0 0 0 22615 12793.447265625 0.13070652314895556 -4 0.10822296142578125 8 Unmodified _LAVLDWEL_ ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;ENSG00000111271|ENST00000313698|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 36.04419817259434 0.28174663821216267 2 {[QN]|[E{I|L}]|[KN]}AVVWE{I|L} 8 3 + 44.213 0 0 4.6175 4.6175 90.759 0 0 0 0.1452280640859982 28.015384402724592 0.1452280640859982 44.21327198560853 0 0.8807196863200843 0 0 0 {[QN]|[E{I|L}]|[KN]}AVVWE{I|L} 4.6175 - 63 NaN NaN 113120.8 NaN 18285 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22624 90.914 NaN 76543 35 0 10431 0.261 + 23004 RAKGERLI 8 54 471.79572511129385 NaN 0 471.7958068847656 PEAK HCD FTMS 0 0 0 22615 26104.6015625 0.825398719237036 3 -0.08861541748046875 9 Unmodified _RAKGERLI_ REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF 2.577480529830294 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 -1 1.2591 0 0 0.13372 0 0 505.4025331309877 273.1100252740844 778.5125584050721 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.13372 - 2 + NaN NaN 93340.4 NaN 18286 4336 22615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22626 90.919 NaN 505160 35 0 20008 0.327 + -1 MVKKMKAVLN 10 97 589.3431377166484 1176.6717225000966 2 589.3430786132812 MULTI HCD FTMS 0 0 0 22625 295044.5625 1 0 0 1 Oxidation (M) _M(Oxidation (M))VKKMKAVLN_ REV__ENSG00000146833|ENST00000349062|TRIM4;REV__nc|ENSG00000146833|Q9C037-3|TRIM4;REV__nc|ENSG00000146833|Q9C037|TRIM4 5.731851221503515 0.44496410492002586 2 E{I|L}{M(Oxidation (M))|F}KK[{M(Oxidation (M))|F}V] 7 -1 14.767 0 0 1.255 0 0 267.1189137189469 0 267.1189137189469 0 7.777741520425678 0 0 0 0.3252574989159953 0 0.3054621874040891 0 E{I|L}{M(Oxidation (M))|F}KK[{M(Oxidation (M))|F}V] 1.255 - 679 NaN NaN 170467.2 NaN 18287 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22627 90.923 NaN 663560 35 0 82632 0.262 + 31839 VYMGLLAVF 9 84 514.7769156895566 1027.5392784459132 2 514.778076171875 MULTI HCD FTMS 0 0 0 22625 218307.609375 0.7160178817838859 -3 0.08203125 2 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 56.04830969593885 0.023109620888794903 2 S{I|L}AV{M(Oxidation (M))|F} 5 5 52.691 0 0 5.1279 0 0 492.2426930158219 0 492.2426930158219 0 34.27440017027358 0 0 0 1.9247425010840047 0 0 0 S{I|L}AV{M(Oxidation (M))|F} 5.1279 - 281 NaN NaN 216011.9 NaN 18288 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22628 90.927 NaN 334190 35 0 19211 0.261 -1 0 79 437.25743752493037 1308.7504831749911 3 437.25726318359375 MULTI HCD FTMS 0 0 0 22625 186427.09375 1 0 0 3 NaN NaN 2 Q 1 -1 3.9794 0 0 0.30406 0 0 722.4306722392474 455.2490633600219 1177.6797355992694 0 0 0 0 0 0 0 0 0 Q 0.30406 - 40 + NaN NaN 148022.5 NaN 18289 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22629 90.93 NaN 764490 35 0 56935 0.261 -1 0 89 520.8066796915185 1039.598806449837 2 521.79443359375 MULTI HCD FTMS 0 0 0 22625 27111.689453125 0.9158652924669715 2 -0.0556793212890625 4 NaN NaN 2 [Y{I|L}]{I|L} 3 -1 17.536 0 0 1.6868 0 0 0 647.3453634168869 647.3453634168869 7.514188072222105 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L} 1.6868 - 564 NaN NaN 211641.4 NaN 18290 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22630 90.934 NaN 281210 35 0 35688 0.261 + 8229 GRRLETRPPI 10 81 597.856590319847 1193.6986277064939 2 597.8563842773438 MULTI HCD FTMS 0 0 0 22625 138862.21875 1 0 0 5 Unmodified _GRRLETRPPI_ REV__ENSG00000155629|ENST00000339364|PIK3AP1;REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF;REV__nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 5.731851221503515 0.44496410492002586 2 A 1 -1 8.2268 0 0 0.68919 0 0 105.07942413467511 1014.5711763971311 1119.6506005318063 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.68919 - 55 + NaN NaN 136029.6 NaN 18291 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22631 90.937 NaN 252180 35 0 78634 0.262 + 26792 SYIALPLTL 9 50 495.7972950477109 989.5800371622219 2 495.7972412109375 MULTI HCD FTMS 0 0 0 22625 114990.9296875 0.07047767772903624 10 -0.28493499755859375 6 Unmodified _SYIALPLTL_ ENSG00000103226|ENST00000399336|NOMO3;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164|ENST00000622306|NOMO2;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;nc|ENSG00000185164|Q5JPE7-3|NOMO2;nc|ENSG00000185164|Q5JPE7|NOMO2 19.256988751693697 0.19398022840297344 2 {I|L}W 2 8 15.573 0 0 1.5737 0 0 672.4059781796032 0 672.4059781796032 0 -0.8804562952784067 -0.8804562952784067 0 0 0 0 0 0 {I|L}W 1.5737 - 27 + NaN NaN 125414.1 NaN 18292 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22632 90.94 NaN 200000 35 0 17430 0.261 + -1 CSGGNLCDCSK 11 65 600.7248976840018 1199.4352424348035 2 600.7251586914062 MULTI HCD FTMS 0 0 0 22625 88003.4765625 0.5544405765954205 -3 0.08203125 7 2 Carbamidomethyl (C) _CSGGNLC(Carbamidomethyl (C))DC(Carbamidomethyl (C))SK_ REV__ENSG00000146530|ENST00000275358|VWDE;REV__nc|ENSG00000146530|Q8N2E2-3|VWDE 2.498486711656943 0.4079631525365919 2 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NN 8 -1 35.341 0 0 2.9465 0 0 0 160.9078736206035 160.9078736206035 21.528806450206233 0 0 0 0 0 1.6989700043360187 0.3494850021680094 0.3252574989159953 [Y{I|L}][R{M(Oxidation (M))|F}]D{I|L}NN 2.9465 - 167 NaN NaN 140748.3 NaN 18293 4337 22625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22634 90.945 NaN 841580 35 0 47227 0.327 -1 0 112 641.8826105638228 1281.7506681944456 2 641.8824462890625 MULTI HCD FTMS 0 0 0 22633 804460.1875 0.48750417099547505 -11 0.2583770751953125 1 NaN NaN 2 W 1 -1 11.594 0 0 0.90453 0 0 1077.6607614335064 0 1077.6607614335064 0 2.324433991513253 0 0 0 0 0 0 0 W 0.90453 - 217 + NaN NaN 226645.3 NaN 18294 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22635 90.95 NaN 2079600 35 0 180360 0.261 + 4466 EYINFLENL 9 122 577.7902485802538 1153.5659442273075 2 577.7903442382812 MULTI HCD FTMS 0 0 0 22633 845287 1 0 0 2 Unmodified _EYINFLENL_ ENSG00000181381|ENST00000682922|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF;nc|ENSG00000181381|Q5H9U9-2|DDX60L 241.96026977874706 4.1082223874489427E-32 2 {[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EN{I|L} 9 4 + 105.55 0 0 9.1499 9.1499 91.613 0 0 0 6.538597267872504 13.779223674026596 6.538597267872504 6.538597267872504 0 1.8807196863200843 0.8860566476931632 2.120371515030528 1.285666875892183 {[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EN{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EN{I|L};{NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}{I|L}EN{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EGG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}YE{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}{I|L}EGG{I|L};{NN|[MP]|[D{I|L}]|[EV]}[AG]Y{M(Oxidation (M))|F}{I|L}EN{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}Y{M(Oxidation (M))|F}{I|L}EN{I|L} 9.1499;8.5831;8.5111;8.3517;8.2036;7.8235;7.7849;7.7129;7.7129;7.7042 -;+;-;-;-;-;-;-;-;- + 14266 NaN NaN 422227.6 NaN 18295 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22636 90.953 NaN 1684200 35 0 433490 0.261 + 11227 IYLDGIITI 9 81 510.80250363447465 1019.5904543357493 2 510.8025207519531 MULTI HCD FTMS 0 0 0 22633 807503.4375 0.2789888476626319 -2 0.0591888427734375 3 Unmodified _IYLDGIITI_ ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E 88.90359156742426 0.00455469703666567 2 [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L} 9 0 + 73.928 0 0 7.2508 7.2508 95.867 0 0 0 16.980523937757752 19.93887181533495 16.980523937757752 73.92844079422488 0 1.579689690656103 1.2218487496163564 0.6861818737241735 0 + + [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L} 7.2508 + + 596 NaN NaN 364771.3 NaN 18296 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22637 90.957 NaN 419310 35 0 44469 0.261 -1 0 79 611.3727864944362 610.3655100278362 1 611.3562622070312 MULTI HCD FTMS 0 0 0 22633 27349.279296875 0.9014788216551693 -2 0.0591888427734375 4 NaN NaN 2 [VP]K 3 -1 3.9524 0 0 0.64755 0 0 0 283.1185396783813 283.1185396783813 0.8534811358448753 0 0 0 0 0 0 0 0 [VP]K 0.64755 - 15 + NaN NaN 158124.6 NaN 18297 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22638 90.96 NaN 642980 35 0 89308 0.261 -1 FPSWAMELL 9 70 555.270183267913 1108.525813602626 2 555.2703857421875 MULTI HCD FTMS 0 0 0 22633 273035.1875 0.8669743883562563 -4 0.10828399658203125 5 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 37.97399986684836 0.07464525285885698 2 YQA{M(Oxidation (M))|F}E{I|L}{I|L} 7 -1 50.531 0 0 4.5584 0 0 226.09437758613439 0 226.09437758613439 0 29.640537328859637 0 0 0 1.6989700043360187 0 0.28872548999643577 0 YQA{M(Oxidation (M))|F}E{I|L}{I|L} 4.5584 - 679 NaN NaN 186498.7 NaN 18298 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22639 90.963 NaN 368340 35 0 36897 0.261 + -1 LHDLPEEGIM 10 76 585.2807592483658 1168.5469655635316 2 585.2606201171875 MULTI HCD FTMS 0 0 0 22633 38546.83203125 0.9089534873760055 -1 0.02625274658203125 6 Oxidation (M) _LHDLPEEGIM(Oxidation (M))_ REV__ENSG00000171804|ENST00000447313|WDR87;REV__nc|ENSG00000171804|Q6ZQQ6-2|WDR87;REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 13.90604991867851 0.3810395177745597 2 GDV{M(Oxidation (M))|F}Q[YT]{M(Oxidation (M))|F} 8 -1 41.146 0 0 3.5212 0 0 193.117909733913 0 193.117909733913 0 7.309224750678922 0 0 0 0 0 0.3494850021680094 0 GDV{M(Oxidation (M))|F}Q[YT]{M(Oxidation (M))|F} 3.5212 - 1107 + NaN NaN 165772.9 NaN 18299 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22640 90.967 NaN 291870 35 0 18624 0.261 + 23753 RRGGTPRPLL 10 82 561.845916191102 1121.677279449004 2 561.8458251953125 MULTI HCD FTMS 0 0 0 22633 203914.0625 0.9429729852564416 -2 0.0591888427734375 7 Unmodified _RRGGTPRPLL_ REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF 6.2057823575117 0.44245551207394906 2 [Y{I|L}]G{I|L}SV[R{I|L}]A 9 -1 22.932 0 0 2.0444 0 0 0 146.08454198246014 146.08454198246014 17.44756724302873 0 0 0 0 0.3807196863200844 1 0.28872548999643577 0.3807196863200844 [Y{I|L}]G{I|L}SV[R{I|L}]A 2.0444 - 176 NaN NaN 136730.9 NaN 18300 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22641 90.97 NaN 364580 35 0 48835 0.261 + 33199 YFDESLVLL 9 64 549.7875710395788 1097.5605891459575 2 549.7901000976562 MULTI HCD FTMS 0 0 0 22633 175743 0.9511091162129467 -2 0.0591888427734375 8 Unmodified _YFDESLVLL_ ENSG00000128242|ENST00000406361|GAL3ST1;ENSG00000175229|ENST00000312006|GAL3ST3;ENSG00000197093|ENST00000360039|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant;nc|ENSG00000197093|Q96RP7-2|GAL3ST4 44.40701690623563 0.04511410083598184 2 EV{I|L}{I|L} 4 5 52.423 0 0 4.7763 0 0 625.2730580060562 0 625.2730580060562 0 34.79818770663016 0 0 0 1 0 1.1989700043360187 0 EV{I|L}{I|L} 4.7763 - 103 NaN NaN 141373.8 NaN 18301 4338 22633 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22643 90.975 NaN 2057900 35 0 274130 0.327 + 26738 SYDVFQLEF 9 93 574.2690857084168 1146.5236184836335 2 574.2692260742188 MULTI HCD FTMS 0 0 0 22642 1076685.875 0.5007659023572747 -1 0.02942657470703125 1 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 160.6895995991744 8.89223804155775E-09 2 {[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 9 0 + 98.51 0 0 8.592 8.592 92.885 0 0 0 1.8129087670394313 64.86448853222001 1.8129087670394313 9.208187539523749 0 3.2302046884880937 0 2.004432191740108 0 + + {[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}DV{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[HQ]CQ{I|L}E{M(Oxidation (M))|F};[YG][YV]EQ{I|L}E{M(Oxidation (M))|F};{[QD]|[EN]|[WG]|[KD]|[RS]}[HQ]C[AG]{I|L}E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[MG]|[TS]}E{M(Oxidation (M))|F} 8.592;7.7889;7.4628;7.1001;6.6596;6.297;6.0076;5.2409;5.2045;4.8505 +;-;-;-;-;-;-;-;-;- + 2827 NaN NaN 410778.5 NaN 18302 4339 22642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22644 90.979 NaN 1795300 35 0 234180 0.261 + 33855 YLLFSSVTI 9 106 521.793939151504 1041.573325369808 2 522.7816772460938 MULTI HCD FTMS 0 0 0 22642 5743.84716796875 0.045127582546723936 -1 0.02942657470703125 2 Unmodified _YLLFSSVTI_ REV__ENST00000495191.5_1_6:32116492-32118763:-|nuORF 28.486842064014134 0.11819662193267319 2 [Y{I|L}]{I|L}D 4 -1 33.084 0 0 3.1764 0 0 0 534.2885274450471 534.2885274450471 16.09440586998837 0 0 0 0 0.8391368308784531 1.6989700043360187 0 0 [Y{I|L}]{I|L}D 3.1764 - 2438 NaN NaN 363945.4 NaN 18303 4339 22642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22645 90.983 NaN 826030 35 0 164800 0.261 + 19482 NPYFEFVL 8 76 514.7582578947412 1027.5019628562823 2 514.7582397460938 MULTI HCD FTMS 0 0 0 22642 161883.875 0.3574404992521416 -1 0.02942657470703125 3 Unmodified _NPYFEFVL_ ENSG00000069248|ENST00000261396|NUP133 15.847184025352803 0.47719562709667024 2 VAED{I|L}AV{M(Oxidation (M))|F} 8 7 38.621 0 0 3.7587 0 0 165.0402610532363 0 165.0402610532363 0 3.175325314361359 0 0 0 0.1989700043360188 0 0 0 VAED{I|L}AV{M(Oxidation (M))|F} 3.7587 - 534 + NaN NaN 220508.6 NaN 18304 4339 22642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22646 90.986 NaN 338880 35 0 22300 0.262 -1 0 77 422.5819131158917 1264.7239099478752 3 422.5817565917969 MULTI HCD FTMS 0 0 0 22642 200940.375 0.4728636410935422 -9 0.2357177734375 4 NaN NaN 2 QV 2 -1 9.9485 0 0 0.78661 0 0 766.4574742562721 268.12384973697505 1034.5813239932472 0 0 0 0 0 0.5 0 0 0 QV 0.78661 - 18 + NaN NaN 152736.9 NaN 18305 4339 22642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22647 90.989 NaN 193540 35 0 14598 0.261 + -1 PSLCKPLVQFV 11 71 644.3604176827344 1286.7062824322686 2 644.3603515625 MULTI HCD FTMS 0 0 0 22642 82498.9296875 0.3687902906873516 -8 0.22611236572265625 5 Carbamidomethyl (C) _PSLC(Carbamidomethyl (C))KPLVQFV_ REV__ENSG00000164053|ENST00000320211|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-2|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-3|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP 2.735195868890462 0.4069250265843076 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 3 -1 3.9524 0 0 0.30717 0 0 0 895.511036420803 895.511036420803 1.7339374311232798 0 0 0 0 0 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 0.30717 - 15 NaN NaN 121774.1 NaN 18306 4339 22642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22648 90.993 NaN 122620 35 0 19294 0.262 -1 WKKMKKKT 8 43 547.332708155783 NaN 0 547.2427368164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _WKKM(Oxidation (M))KKKT_ nc|ENSG00000101180|Q9Y5N1-2|HRH3 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110789.5 NaN 18307 4339 22642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22650 90.998 NaN 1494200 35 0 69407 0.327 -1 0 112 633.3693349814924 1264.7241170297848 2 633.3690795898438 MULTI HCD FTMS 0 0 0 22649 1395532.625 0.45315750118461956 -9 0.2489776611328125 1 NaN NaN 2 D[C(Carbamidomethyl (C))R]{[HG]|PP}{[SA]|[TG]} 7 -1 12.227 0 0 0.96675 0 0 463.3296629896508 0 463.3296629896508 0 2.5597429150292843 0 0 0 0.6861818737241735 0 0.9634679910804405 0 D[C(Carbamidomethyl (C))R]{[HG]|PP}{[SA]|[TG]} 0.96675 - 138 NaN NaN 334790.8 NaN 18308 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22651 91.002 NaN 3107900 35 0 663430 0.263 + 11228 IYLDGIITI 9 82 510.80250363447465 1019.5904543357493 2 511.2897644042969 MULTI HCD FTMS 0 0 0 22649 1542413.125 1 0 0 2 Unmodified _IYLDGIITI_ ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000215126|Q5RIA9-3|ZNG1E 120.45040980043947 0.0012363446172167195 2 [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L} 9 0 + 68.807 0 0 6.7485 6.7485 88.533 0 0 0 15.243996693637712 5.0356705871273135 5.0356705871273135 8.066884185923655 0 1.9308845489566888 1.3979400086720375 0.6747425010840047 0 + + [Y{I|L}]{I|L}DG{I|L}{I|L}T{I|L};[Y{I|L}]D{I|L}G{I|L}{I|L}T{I|L};[{I|L}T][VG]{[QN]|[E{I|L}]|[KN]}{I|L}Y{I|L} 6.7485;5.9573;1.8659 +;-;- + 575 NaN NaN 563429.8 NaN 18309 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22652 91.006 NaN 590030 35 0 69467 0.261 -1 0 102 553.3325404491379 1104.6505279650758 2 553.3328247070312 MULTI HCD FTMS 0 0 0 22649 250194.609375 0.6237315961169877 3 -0.095123291015625 3 NaN NaN 2 V{I|L}{M(Oxidation (M))|F}[WE]V{M(Oxidation (M))|F} 7 -1 34.148 0 0 3.0913 0 0 166.1758668189347 0 166.1758668189347 0 22.46514648226315 0 0 0 0.3807196863200844 0 0.6139829889124311 0 V{I|L}{M(Oxidation (M))|F}[WE]V{M(Oxidation (M))|F} 3.0913 - 429 + NaN NaN 188496.9 NaN 18310 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22653 91.009 NaN 2200500 35 0 289690 0.261 + 27646 TAISLFYEL 9 93 528.7843208890033 1055.5540888448065 2 528.775390625 MULTI HCD FTMS 0 0 0 22649 958384.8125 0.009564430800166734 41 -1.1397018432617188 4 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 172.90653553480564 2.2447970467336844E-09 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 81.609 0 0 7.7314 7.7314 95.987 0 0 0 5.6424927368725974 43.95963923293273 5.6424927368725974 43.72363747448347 0 2.4604093769761874 0 1.8411290632962718 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};{[QN]|[E{I|L}]|[KN]}K[YV]YE{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]VV[YV]YE{I|L};[TA]{I|L}Y[{I|L}A]YE{I|L};[TA]{I|L}S{I|L}[HM]{[{M(Oxidation (M))|F}H]|[RQ]};[YE]{I|L}{M(Oxidation (M))|F}{I|L}S[TA]{I|L};[TA]{I|L}S[YE]{I|L}{I|L}{M(Oxidation (M))|F};[TA]{I|L}S[RH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};[YE]{M(Oxidation (M))|F}{I|L}{I|L}S[TA]{I|L} 7.7314;3.5891;3.0886;3.0011;2.9055;2.6911;2.2839;2.2288;2.0707;1.9987 +;-;-;-;-;-;-;-;-;- + 1735 NaN NaN 422973.2 NaN 18311 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22654 91.012 NaN 1271700 35 0 108900 0.261 + 10136 IFLSQPILL 9 99 522.3286665237281 1042.642780114256 2 522.3287353515625 MULTI HCD FTMS 0 0 0 22649 194380.84375 0.7952161388738033 -2 0.0522918701171875 5 Unmodified _IFLSQPILL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 41.8396318013385 0.056899836730939755 2 [Y{I|L}]{I|L}AQ[{I|L}P]{I|L}{I|L} 9 2 + 41.377 0 0 3.9685 3.9685 81.589 0 0 0 15.099476779629143 11.022781527832848 11.022781527832848 1.5181852621731124 0 1.0440228147639203 2 0 0.5796896906561032 [Y{I|L}]{I|L}AQ[{I|L}P]{I|L}{I|L};[Y{I|L}]VVN[{I|L}P]{I|L}{I|L};[Y{I|L}]{[HG]|PP}{I|L}[KS]{I|L}{I|L};[Y{I|L}]{I|L}{[HG]|PP}[KS]{I|L}{I|L} 3.9685;3.8229;2.2111;2.071 -;-;-;- 1513 NaN NaN 283496.6 NaN 18312 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22655 91.016 NaN 185440 35 0 12792 0.261 + 1848 CVCVCFRSPF 10 64 580.7581692767477 1159.5017856202953 2 581.258544921875 MULTI HCD FTMS 0 0 0 22649 109404.140625 0.6439131287240453 -5 0.13439178466796875 6 Unmodified _CVCVCFRSPF_ REV__ENST00000548357.2_2_16:21397180-21397309:+|nuORF 12.531546534597751 0.39389615866941496 2 E{I|L}Q{M(Oxidation (M))|F}VD[MD] 8 -1 42.6 0 0 3.674 0 0 164.08137704238214 0 164.08137704238214 0 13.268513104544724 0 0 0 0 0 1.1989700043360187 0 E{I|L}Q{M(Oxidation (M))|F}VD[MD] 3.674 - 497 + NaN NaN 123121.9 NaN 18313 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22656 91.019 NaN 98227 35 0 21257 0.261 + 33658 YKEMTEDYE 9 36 604.2460131439688 1206.4774733547374 2 604.2462158203125 MULTI HCD FTMS 0 0 0 22649 55832.19140625 1 0 0 7 Unmodified _YKEMTEDYE_ REV__ENSG00000196659|ENST00000408939|TTC30B;REV__ENSG00000197557|ENST00000355689|TTC30A 1.4819007175156935 0.3397831423917744 2 TS 2 -1 7.9588 0 0 0.65967 0 0 554.189217594775 461.1862887018188 1015.3755062965938 0 0 0 0 0 0 0 0 0 TS 0.65967 - 6 + NaN NaN 116206.3 NaN 18314 4340 22649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22658 91.024 NaN 2279100 35 0 339740 0.327 + 27647 TAISLFYEL 9 90 528.7843208890033 1055.5540888448065 2 528.7843627929688 MULTI HCD FTMS 0 0 0 22657 426034.125 0.004251709599240007 42 -1.1808319091796875 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 144.35026110057638 1.4798765981150827E-05 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 9 0 + 77.317 0 0 7.3248 7.3248 95.002 0 0 0 6.478174818886373 50.732361839508755 6.478174818886373 37.86507189255381 0 2.504432191740108 0 1.7658715643802765 0 + + [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L};[TA]{I|L}S{I|L}EY{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}K[YV]YE{I|L};[TA]{I|L}S[YE]{M(Oxidation (M))|F}{I|L}{I|L};[TA]VV[YV]YE{I|L};[TA]{I|L}S[YE]{I|L}{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}KPA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KN;[TA]{I|L}[RP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KN;[YE]{M(Oxidation (M))|F}{I|L}{[TV]|[{I|L}S]}[TA]{I|L};[YE]{I|L}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}[TA]{I|L} 7.3248;3.7376;3.426;2.7304;2.6695;2.4404;1.638;1.0805;0.49445;0.49445 +;-;-;-;-;-;-;-;-;- + 1132 NaN NaN 439637.5 NaN 18315 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22659 91.028 NaN 1120100 35 0 121930 0.261 -1 0 83 518.8105707854379 1035.6065886376757 2 518.8104858398438 MULTI HCD FTMS 0 0 0 22657 492243 0.3038079449761888 -5 0.13765716552734375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6406 0 0 870.5278360515414 0 870.5278360515414 0 5.123045056675455 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6406 - 73 + NaN NaN 268204.1 NaN 18316 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22660 91.032 NaN 601930 35 0 82625 0.261 + 17850 MHYATELTL 9 92 539.765854106331 1077.5171552794618 2 539.7760620117188 MULTI HCD FTMS 0 0 0 22657 87932.734375 0.2746357950453954 -6 0.1605682373046875 3 Unmodified _MHYATELTL_ REV__ENSG00000064419|ENST00000265388|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-1|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-3|TNPO3;REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3;REV__TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant 32.30548876998284 0.10066689432505688 2 [DG]{I|L}C(Carbamidomethyl (C)){[WT]|[RM]}{I|L}T{I|L} 9 -1 + 30.63 0 0 2.8426 2.8426 80.73 0 0 0 1.584591078390872 1.584591078390872 1.584591078390872 1.584591078390872 0 1.079689690656103 0 1.2931576817365436 0 [DG]{I|L}C(Carbamidomethyl (C)){[WT]|[RM]}{I|L}T{I|L};{I|L}{M(Oxidation (M))|F}[KP]ND[TP]{M(Oxidation (M))|F};{I|L}[DG]C(Carbamidomethyl (C)){[WT]|[RM]}{I|L}T{I|L};[DG]{I|L}C(Carbamidomethyl (C)){[WT]|[RM]}T{I|L}{I|L};[{I|L}T]AS[W{M(Oxidation (M))|F}]S{I|L}[PG];{I|L}[DG]C(Carbamidomethyl (C)){[WT]|[RM]}T{I|L}{I|L};[DG]{I|L}[CG]{[WT]|[RM]}{I|L}T{I|L};{[RE]|[WV]}C(Carbamidomethyl (C))A{[ES]|[DT]|[{I|L}C]}{I|L}T{I|L};{[RE]|[WV]}S{I|L}{M(Oxidation (M))|F}Y[YT];{I|L}[DG]S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG] 2.8426;2.6956;2.4697;2.3835;2.2399;2.0105;1.988;1.7748;1.7256;1.6409 -;-;-;-;-;-;-;-;-;- 1132 + NaN NaN 179166.5 NaN 18317 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22661 91.035 NaN 573160 35 0 155020 0.261 + 33228 YFEELITML 9 68 587.7887695612784 1173.5629861893567 2 587.7889404296875 MULTI HCD FTMS 0 0 0 22657 120534.0625 0.40064700332486664 7 -0.21300506591796875 4 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 68.08070601005525 0.009709267492204555 2 [Y{M(Oxidation (M))|F}]EE{I|L}{I|L}T{M(Oxidation (M))|F}{I|L} 9 0 + 57.635 0 0 4.9111 4.9111 89.81 0 0 0 4.137342758552691 31.43684392785687 4.137342758552691 21.586615947324077 0 1.805462187404089 0 0.6549471895720984 0 + + [Y{M(Oxidation (M))|F}]EE{I|L}{I|L}T{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}H[CS][KP]T{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T]{I|L}[RV]C(Carbamidomethyl (C))HE{I|L} 4.9111;3.0717;0.76771 +;-;- + 236 NaN NaN 182080.7 NaN 18318 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22662 91.038 NaN 1177900 35 0 96017 0.261 + 31561 VYGVFSIAEF 10 114 566.2894968401141 1130.5644407470281 2 565.7687377929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VYGVFSIAEF_ ENSG00000129625|ENST00000379638|REEP5;ENST00000497856.6_1_5:112228472-112256990:-|nuORF;nc|ENSG00000129625|Q00765-2|REEP5 96.28474662873226 0.000520040862558024 2 [YV]VGS{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F} 10 3 + 83.166 0 0 7.3562 7.3562 89.199 0 0 0 15.845368827685903 23.369768420908784 15.845368827685903 6.9897000433601875 0 1.8001648626366045 1.3010299956639813 1.5021824027012252 0 [YV]VGS{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YV]GVS{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YV]KD{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YT]T{I|L}{M(Oxidation (M))|F}SGVP{M(Oxidation (M))|F};[YV]K{M(Oxidation (M))|F}D{I|L}AE{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}T]S{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F};[YT]T{I|L}{M(Oxidation (M))|F}SVGP{M(Oxidation (M))|F};[YV]VGSE{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]T{I|L}{M(Oxidation (M))|F}DKP{M(Oxidation (M))|F};[YK]VD{M(Oxidation (M))|F}{I|L}AE{M(Oxidation (M))|F} 7.3562;6.7379;6.317;5.6894;5.2327;5.0794;5.0712;4.8871;4.6503;4.6337 -;-;-;-;-;-;-;-;-;- 11052 NaN NaN 276170.1 NaN 18319 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22663 91.042 NaN 268200 35 0 17917 0.261 + 14601 LFPSSVTNSL 10 72 532.7847016423576 1063.5548503515151 2 532.7849731445312 MULTI HCD FTMS 0 0 0 22657 62618.7265625 0.35587586111849634 1 -0.036102294921875 6 Unmodified _LFPSSVTNSL_ ENSG00000164327|ENST00000357387|RICTOR;ENST00000510711.5_1_5:38971963-39074479:-|nuORF;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR 9.38312468134398 0.42334543440173333 2 {M(Oxidation (M))|F}YY{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 9 28.416 0 0 2.6718 0 0 165.1300608045645 0 165.1300608045645 0 17.95880017344075 0 0 0 0 0 0 0 {M(Oxidation (M))|F}YY{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6718 - 324 + NaN NaN 128340.6 NaN 18320 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22664 91.045 NaN 326330 35 0 104120 0.263 -1 0 56 407.18355698796677 812.3525610427336 2 407.1833801269531 MULTI HCD FTMS 0 0 0 22657 140784.390625 0.8014087580015677 1 -0.036102294921875 7 NaN NaN 2 {I|L} 1 -1 8.4949 0 0 1.0457 0 0 544.1744127046461 152.07167993717033 696.2460926418164 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0457 - 6 + NaN NaN 148523.7 NaN 18321 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22665 91.048 NaN 199580 35 0 36790 0.261 -1 FCHGFSQSLC 10 60 593.2426604554997 1184.4707679777994 2 593.24267578125 MULTI HCD FTMS 0 0 0 22657 10578.4140625 0.11676268856249311 1 -0.036102294921875 8 Carbamidomethyl (C) _FC(Carbamidomethyl (C))HGFSQSLC_ MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|77|3|anti-sense 5.731851221503515 0.44496410492002586 2 K{I|L}AP{M(Oxidation (M))|F} 5 -1 9.469 0 0 0.79943 0 0 610.1270312608057 0 610.1270312608057 0 6.370090806403466 0 0 0 0.23020468848809378 0 0 0 K{I|L}AP{M(Oxidation (M))|F} 0.79943 - 77 + NaN NaN 125940.5 NaN 18322 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22666 91.052 NaN 344820 35 0 16236 0.261 -1 QSWSPMSVL 9 77 525.7492664010203 1049.4839798688406 2 525.7489013671875 MULTI HCD FTMS 0 0 0 22657 40163.00390625 0.5231442745992666 1 -0.036102294921875 9 Oxidation (M) _QSWSPM(Oxidation (M))SVL_ ENST00000442218.2_1_12:48174732-48175212:+|nuORF 13.042465956692817 0.2476723265019929 2 [{M(Oxidation (M))|F}V][QA]WRP{M(Oxidation (M))|F} 8 -1 + 19.882 0 0 1.8944 1.8944 80.739 0 0 0 0.043869621537524495 1.2771354974869809 0.043869621537524495 2.188878426313252 0 0.16773532018394383 1.6989700043360187 0 0 [{M(Oxidation (M))|F}V][QA]WRP{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QA]{[QV]|[N{I|L}]|[RA]|[KV]}DP{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QA][EP]NV{M(Oxidation (M))|F};[YT]N{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}V{M(Oxidation (M))|F};{[QS]|[NT]}[{I|L}A][Q{I|L}]{M(Oxidation (M))|F}P{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))G]|[NC]}[EP]{I|L}{I|L}{[QS]|[NT]}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))G]|[NC]}V[HQ][R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};[YT]N[YK]{[QS]|[NT]}{M(Oxidation (M))|F};{[QS]|[NT]}{[QV]|[N{I|L}]|[RA]|[KV]}VV{M(Oxidation (M))|F}P{M(Oxidation (M))|F};{[QS]|[NT]}{[QV]|[N{I|L}]|[RA]|[KV]}[QT]NV{M(Oxidation (M))|F} 1.8944;1.6859;1.4914;1.198;1.1844;1.1802;1.1324;1.0176;1.0166;0.9613 -;-;-;-;-;-;-;-;-;- 982 NaN NaN 147897.9 NaN 18323 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22667 91.055 NaN 89756 35 0 15968 0.261 + 17167 LYLRMFKLK 9 39 606.3698439575265 NaN 0 606.3694458007812 PEAK HCD FTMS 0 0 0 22657 9446.49609375 0.15386061593032782 1 -0.036102294921875 10 Unmodified _LYLRMFKLK_ ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-7|AFF2 0.6014990680409731 0.29233206172879045 2 {M(Oxidation (M))|F} 1 8 1.5938 0 0 0.13164 0 0 540.475087229703 520.2065523736936 1060.6816396033967 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.13164 + + 1 + NaN NaN 114746.8 NaN 18324 4341 22657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22669 91.06 NaN 1002300 35 0 115400 0.327 -1 TLCSPPGWVG 10 94 537.2581593500743 1072.5017657669484 2 537.2581176757812 MULTI HCD FTMS 0 0 0 22668 425692.875 0.280043990733132 2 -0.062225341796875 1 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))SPPGWVG_ ENST00000252699.6_1_19:39220158-39220314:+|nuORF 19.256988751693697 0.33098864134661865 2 {[QN]|[E{I|L}]|[KN]}[YV]C(Carbamidomethyl (C)){M(Oxidation (M))|F}SGV 9 -1 + 32.505 0 0 3.0308 3.0308 81.088 0 0 0 8.91827190205533 17.490246567991377 8.91827190205533 2.1471904193289575 0 0.3054621874040891 1.3979400086720375 0.5451140161145328 0 {[QN]|[E{I|L}]|[KN]}[YV]C(Carbamidomethyl (C)){M(Oxidation (M))|F}SGV;{[QN]|[E{I|L}]|[KN]}[YV]KYC(Carbamidomethyl (C))V;{[QN]|[E{I|L}]|[KN]}[YV]{[CT]|[{M(Oxidation (M))|F}G]}CSGV;{[QN]|[E{I|L}]|[KN]}[YV][CG]{M(Oxidation (M))|F}SGV;{[QN]|[E{I|L}]|[KN]}[YV]KY[CG]V;[{I|L}T]{[WN]|[YH]}{[HG]|PP}CSGV;[YE]R{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}CSGV;[YE]R{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}SGV;[YE][{I|L}V]C(Carbamidomethyl (C)){M(Oxidation (M))|F}SR;{[QN]|[E{I|L}]|[KN]}[YV]K{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 3.0308;2.8306;2.315;2.1722;1.967;1.838;1.6114;1.4687;1.3709;1.256 -;-;-;-;-;-;-;-;-;- 1125 NaN NaN 255240.7 NaN 18325 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22670 91.064 NaN 698990 35 0 220020 0.261 + 10621 IPQLLEAVL 9 46 498.3105602983143 994.6065676634286 2 498.310546875 MULTI HCD FTMS 0 0 0 22668 427831.90625 0.9369234785863841 1 -0.03284454345703125 2 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 38.175570920033316 0.07371992880350783 2 {I|L}EAV{I|L} 5 4 52.981 0 0 5.3268 0 0 451.2769032209 0 451.2769032209 0 21.298297336285295 0 0 0 1.9247425010840047 0 0 0 + {I|L}EAV{I|L} 5.3268 + + 35 NaN NaN 206944.8 NaN 18326 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22671 91.068 NaN 799690 35 0 276200 0.262 -1 0 48 405.11861942977845 808.2226859263569 2 405.1190185546875 MULTI HCD FTMS 0 0 0 22668 355510.875 0.13010251343596724 20 -0.566192626953125 3 NaN NaN 2 K 1 -1 3.0989 0 0 0.38343 0 0 494.11420601037867 182.99122034244377 677.1054263528224 0 0 0 0 0 0 0 0 0 K 0.38343 - 7 + NaN NaN 208775.1 NaN 18327 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22672 91.071 NaN 401380 35 0 15156 0.261 + 33536 YIIGPNYQSF 10 85 601.2984745316343 1200.5823961300684 2 601.2982177734375 MULTI HCD FTMS 0 0 0 22668 122355.7890625 0.6914414853915791 2 -0.062225341796875 4 Unmodified _YIIGPNYQSF_ REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENST00000397998.7_1_8:19263293-19315147:-|nuORF;REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1 43.85829265575387 0.11192494793849486 2 [Y{I|L}]{[ET]|[MV]}{[MG]|[TS]}{I|L}NN{M(Oxidation (M))|F} 10 -1 + 62.725 0 0 5.2246 5.2246 89.61 0 0 0 6.4172066360230815 54.23061874357607 6.4172066360230815 15.937492820425803 0 1.305462187404089 1.3979400086720375 1.079689690656103 0 [Y{I|L}]{[ET]|[MV]}{[MG]|[TS]}{I|L}NN{M(Oxidation (M))|F};[YV]M{I|L}{[MG]|[TS]}{I|L}NN{M(Oxidation (M))|F};[YV]M{I|L}{[MG]|[TS]}{I|L}NGG{M(Oxidation (M))|F};[YV]M{I|L}{[MG]|[TS]}{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{[ET]|[MV]}[C(Carbamidomethyl (C))Q]{I|L}K{M(Oxidation (M))|F};[Y{I|L}]{I|L}E[RD][{M(Oxidation (M))|F}V]{M(Oxidation (M))|F};[Y{I|L}]{I|L}EC[Y{I|L}]{[RE]|[WV]};[Y{I|L}]{I|L}EC{[RE]|[WV]}[Y{I|L}];[RH]{I|L}[C(Carbamidomethyl (C))Q]{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{[ET]|[MV]}D[Y{I|L}]{[RE]|[WV]} 5.2246;3.8971;3.1338;3.1338;3.062;2.7156;2.5598;2.4871;2.3958;2.1821 -;-;-;-;-;-;-;-;-;- 718 NaN NaN 151100.3 NaN 18328 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22673 91.074 NaN 296990 35 0 83445 0.264 -1 0 51 407.18355698796677 812.3525610427336 2 407.1832275390625 MULTI HCD FTMS 0 0 0 22668 73298.34375 0.4172474971655578 2 -0.062225341796875 5 NaN NaN 2 {I|L} 1 -1 5.8412 0 0 0.71905 0 0 544.1746568452711 152.0714510553344 696.2461079006055 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.71905 - 8 + NaN NaN 126627.7 NaN 18329 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22674 91.078 NaN 196060 35 0 8410.6 0.261 -1 0 86 619.8696707185969 1237.7247885039938 2 619.8693237304688 MULTI HCD FTMS 0 0 0 22668 188626.796875 0.10046058810226431 42 -1.174346923828125 6 NaN NaN 2 D 1 -1 6.7217 0 0 0.54307 0 0 105.07827932720814 1014.5730074518186 1119.6512867790268 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.54307 - 39 + NaN NaN 131565.3 NaN 18330 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22675 91.081 NaN 156220 35 0 16452 0.261 + 15927 LPNLEDIYTSL 11 53 639.3347709527486 1276.6549889722971 2 639.3336181640625 MULTI HCD FTMS 0 0 0 22668 38939.44921875 0.3409701977275036 -2 0.06227874755859375 7 Unmodified _LPNLEDIYTSL_ ENSG00000198646|ENST00000359003|NCOA6 21.666072377320713 0.2683052127874542 2 D{I|L}YTS{I|L} 6 5 56.146 0 0 4.3979 0 0 566.3058338849625 0 566.3058338849625 0 50.66183773464459 0 0 0 1.8494850021680094 0 0.5 0 + D{I|L}YTS{I|L} 4.3979 + + 60 NaN NaN 123775.3 NaN 18331 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22676 91.084 NaN 161720 35 0 18477 0.262 -1 MPATVFMLF 9 51 544.7608849109746 1087.507216888749 2 544.7609252929688 MULTI HCD FTMS 0 0 0 22668 61214.94921875 0.7093816019204106 4 -0.11788177490234375 8 2 Oxidation (M) _M(Oxidation (M))PATVFM(Oxidation (M))LF_ ENSG00000109133|ENST00000504986|TMEM33 23.1484247019978 0.1603590852062899 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 -1 42.167 0 0 3.8774 0 0 515.2414831014429 0 515.2414831014429 0 16.197887582883936 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.8774 + + 123 + NaN NaN 129903.6 NaN 18332 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22677 91.088 NaN 90386 35 0 6673.7 0.261 + 14222 LAVLDWEL 8 45 479.7658970423816 957.5172411515632 2 479.76544189453125 MULTI HCD FTMS 0 0 0 22668 26705.53125 0.27284179674638737 2 -0.062225341796875 9 Unmodified _LAVLDWEL_ ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;ENSG00000111271|ENST00000313698|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 11.640296217721598 0.50814828952472 2 SRAN 4 8 27.59 0 0 2.8814 0 0 511.3007069318375 0 511.3007069318375 0 6.620564873333823 0 0 0 0.28872548999643577 0 0 0 SRAN 2.8814 - 52 NaN NaN 119270.5 NaN 18333 4342 22668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22679 91.093 NaN 1067600 35 0 59004 0.327 -1 0 114 641.8826105638228 1281.7506681944456 2 641.8824462890625 MULTI HCD FTMS 0 0 0 22678 872307.3125 0.528619638164012 -6 0.17366790771484375 1 NaN NaN 2 D 1 -1 9.6041 0 0 0.7493 0 0 105.07959664353105 1058.595423590884 1163.675020234415 0 0 0 0 0 0.3807196863200844 0 0.3807196863200844 0 D 0.7493 - 184 + NaN NaN 260819.3 NaN 18334 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22680 91.097 NaN 688500 35 0 43839 0.261 + 4467 EYINFLENL 9 98 577.7902485802538 1153.5659442273075 2 577.7902221679688 MULTI HCD FTMS 0 0 0 22678 226399.0625 0.2678369151542612 5 -0.1440582275390625 2 Unmodified _EYINFLENL_ ENSG00000181381|ENST00000682922|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF;nc|ENSG00000181381|Q5H9U9-2|DDX60L 155.95374464489888 2.532374632554729E-06 2 [YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L} 9 3 + 88.149 0 0 7.6414 7.6414 90.246 0 0 0 11.034787985501737 14.09256854528806 11.034787985501737 8.226825097560422 0 1.6861818737241734 1.5228787452803376 1.4124379954164592 0.6861818737241735 [YV]QE{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}DQ{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}EGG{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EN{I|L};[YV][AG]E{M(Oxidation (M))|F}{I|L}EN{I|L};[YV]QE{M(Oxidation (M))|F}{I|L}D[AG]{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}DQ{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}EY{M(Oxidation (M))|F}{I|L}EN{I|L};[YV][AG]E{M(Oxidation (M))|F}{I|L}DQ{I|L};[YE]{I|L}N{M(Oxidation (M))|F}{I|L}EGG{I|L} 7.6414;6.9282;6.8432;6.6848;6.6165;6.13;5.9717;5.9679;5.9034;5.8866 -;-;-;+;-;-;-;-;-;- + 3211 NaN NaN 212264.4 NaN 18335 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22681 91.101 NaN 1280700 35 0 87148 0.261 + -1 ICVTLVWGP 9 103 522.7815438890923 1043.5485348449845 2 522.2803955078125 MULTI HCD FTMS 0 0 0 22678 298143.25 0.9469018108041235 -1 0.03284454345703125 3 Carbamidomethyl (C) _IC(Carbamidomethyl (C))VTLVWGP_ REV__ENST00000589955.2_1_18:60984877-60985099:-|nuORF 18.13498045792455 0.20367413111508956 2 A{I|L}PTPYP 7 -1 28.229 0 0 2.7051 0 0 286.1288014142594 0 286.1288014142594 0 3.167695152699821 0 0 0 0 0 0.6861818737241735 0 A{I|L}PTPYP 2.7051 - 1824 NaN NaN 288408.7 NaN 18336 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22682 91.104 NaN 231060 35 0 10846 0.261 -1 0 74 437.25743752493037 1308.7504831749911 3 437.25732421875 MULTI HCD FTMS 0 0 0 22678 108951.28125 0.5844176351110446 6 -0.17023468017578125 4 NaN NaN 2 K 1 -1 5.7133 0 0 0.43655 0 0 850.477943967763 327.1446627252563 1177.6226066930194 0 0 0 0 0 0.5 0 0 0 K 0.43655 - 8 + NaN NaN 128095.9 NaN 18337 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22683 91.107 NaN 166650 35 0 15222 0.261 + 14411 LEKVRREHK 9 65 597.856590319847 1193.6986277064939 2 597.8565063476562 MULTI HCD FTMS 0 0 0 22678 55555.7578125 0.40007828128196316 6 -0.17023468017578125 5 Unmodified _LEKVRREHK_ REV__ENSG00000078814|ENST00000262873|MYH7B;REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000264424|ENST00000255381|MYH4;REV__MYH2|p.R1847H|1|0.2|ENSG00000125414|chr17:10523345-10523345|C/T|missense_variant;REV__nc|ENSG00000078814|A7E2Y1-3|MYH7B;REV__nc|ENSG00000078814|A7E2Y1|MYH7B 1.6526216038709556 0.33848895094777925 2 E 1 -1 6.9897 0 0 0.58555 0 0 132.21008917228102 929.4192276881305 1061.6293168604116 0 0 0 0 0 0 0 0 0 E 0.58555 + + 49 + NaN NaN 115108.3 NaN 18338 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22684 91.111 NaN 353940 35 0 38780 0.261 + 20040 NYIISVLNL 9 69 524.8055527254031 1047.5965525176061 2 524.8057861328125 MULTI HCD FTMS 0 0 0 22678 110326.15625 1 0 0 6 Unmodified _NYIISVLNL_ ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF 59.05245873256422 0.018907022117377846 2 [YN]{I|L}{I|L}SV{I|L}N{I|L} 9 0 + 74.84 0 0 7.1439 7.1439 90.533 0 0 0 13.156753288559813 11.706962271689747 11.706962271689747 9.208187539523749 0 2.5356668758921828 1.2218487496163564 0 0.5994850021680094 + + [YN]{I|L}{I|L}SV{I|L}N{I|L};[YN]{I|L}{I|L}SV{I|L}GG{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}SV{I|L}N{I|L};[YN]{I|L}{I|L}SVQV{I|L};[{M(Oxidation (M))|F}V][SG]{I|L}SV{I|L}N{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}SV{I|L}GG{I|L};[YN]{I|L}{I|L}SV[AG]V{I|L};[{M(Oxidation (M))|F}V][SG]{I|L}SV{I|L}GG{I|L};[{M(Oxidation (M))|F}V]{M(Oxidation (M))|F}[NP]RR{I|L} 7.1439;6.265;5.5217;5.1708;4.7121;4.6427;4.2919;3.5755;0.53414 +;-;-;-;-;-;-;-;- + 1571 NaN NaN 162461.8 NaN 18339 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22685 91.114 NaN 208390 35 0 24304 0.261 + 33966 YLTGIIITP 9 53 495.7972950477109 989.5800371622219 2 495.7971496582031 MULTI HCD FTMS 0 0 0 22678 22492.1015625 0.013785357590190388 16 -0.444854736328125 7 Unmodified _YLTGIIITP_ ENST00000287936.8_1_5:74650421-74650884:+|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}D{I|L}VS{M(Oxidation (M))|F} 6 7 30.355 0 0 3.0674 0 0 297.20865151944685 0 297.20865151944685 0 16.375175252488248 0 0 0 0 0 0 0 {I|L}D{I|L}VS{M(Oxidation (M))|F} 3.0674 - 92 + NaN NaN 135548.2 NaN 18340 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22686 91.117 NaN 204280 35 0 39151 0.261 + -1 CSYDAVNQG 9 50 507.2029583703137 NaN 0 506.7887268066406 PEAK HCD FTMS 0 0 0 22678 34053.1875 0.6440823051980795 -3 0.095123291015625 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))SYDAVNQG_ REV__ENST00000438138.1_1_10:71539180-71539366:+|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 5.4846 0 0 0.54174 0 0 184.94691908262115 711.3327120416624 896.2796311242835 0 0 0 0 0 0 0 0 0 {I|L} 0.54174 - 13 + NaN NaN 132989.8 NaN 18341 4343 22678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22688 91.122 NaN 1311500 35 0 111920 0.327 + 26739 SYDVFQLEF 9 92 574.2690857084168 1146.5236184836335 2 574.2688598632812 MULTI HCD FTMS 0 0 0 22687 480770.625 0.22360610596381783 4 -0.11467742919921875 1 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 128.93241758739586 0.0006697181619526092 2 [{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F} 9 4 + 82.954 0 0 7.2353 7.2353 88.985 0 0 0 4.361045765271285 48.336586673740875 4.361045765271285 6.9897000433601875 0 2.305462187404089 0 1.8283409326844267 0.2742275032520141 [{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}Q{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{[MG]|[TS]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};{[ET]|[MV]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[AG]{I|L}E{M(Oxidation (M))|F};[YV]VGS{M(Oxidation (M))|F}{[CP]|[EA]}E{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}YQ{M(Oxidation (M))|F}V{I|L}E{M(Oxidation (M))|F};[YV]VGSE{[MS]|[{M(Oxidation (M))|F}A]}E{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}YV{I|L}E{M(Oxidation (M))|F};[YV]V[YQ]{[CP]|[EA]}E{M(Oxidation (M))|F};{[DS]|[MA]|[CV]|TT}A[YG]{M(Oxidation (M))|F}V{I|L}E{M(Oxidation (M))|F} 7.2353;6.6256;6.193;5.5833;4.7407;4.6414;4.168;4.1397;3.961;3.8606 -;-;-;-;-;-;-;-;-;- 5200 NaN NaN 291459.2 NaN 18342 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22689 91.126 NaN 424240 35 0 28956 0.261 -1 0 83 611.3564756461734 1220.6983983591467 2 611.3560180664062 MULTI HCD FTMS 0 0 0 22687 299325.71875 0.0819007379530857 55 -1.5282669067382812 2 NaN NaN 2 C 1 -1 7.3464 0 0 0.60182 0 0 674.3726670132468 440.28000818424067 1114.6526751974875 0 0 0 0 0 0.4247425010840047 0 0 0 C 0.60182 - 63 + NaN NaN 161743.9 NaN 18343 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22690 91.13 NaN 724940 35 0 102640 0.261 -1 FPSWAMELL 9 69 555.270183267913 1108.525813602626 2 555.270263671875 MULTI HCD FTMS 0 0 0 22687 296964.5625 0.9429578373920056 2 -0.05565643310546875 3 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}E{I|L}{I|L} 4 -1 45.037 0 0 4.0628 0 0 588.2648792951187 0 588.2648792951187 0 29.552593986562812 0 0 0 1.3494850021680094 0 0.2614393726401688 0 {M(Oxidation (M))|F}E{I|L}{I|L} 4.0628 + + 547 NaN NaN 203663.3 NaN 18344 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22691 91.133 NaN 664970 35 0 79109 0.261 -1 VYMGLLAVF 9 68 514.7769156895566 1027.5392784459132 2 514.7775268554688 MULTI HCD FTMS 0 0 0 22687 203579.03125 0.6677102422062127 4 -0.11467742919921875 4 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 36.466142684027034 0.08156716203802528 2 S{I|L}AV{M(Oxidation (M))|F} 5 -1 49.993 0 0 4.8653 0 0 492.24119765449376 0 492.24119765449376 0 2.6880324195912806 0 0 0 1.805462187404089 0 0 0 S{I|L}AV{M(Oxidation (M))|F} 4.8653 - 551 NaN NaN 198416.7 NaN 18345 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22692 91.137 NaN 154440 35 0 9067 0.261 + 8220 GRLKHERVK 9 81 561.845916191102 1121.677279449004 2 561.8460693359375 MULTI HCD FTMS 0 0 0 22687 86123.0234375 0.39826426639982154 4 -0.11467742919921875 5 Unmodified _GRLKHERVK_ ENSG00000092148|ENST00000399332|HECTD1 1.6526216038709556 0.33848895094777925 2 A{M(Oxidation (M))|F} 2 9 13.979 0 0 1.2463 0 0 885.5612954175571 0 885.5612954175571 0 6.9897000433601875 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.2463 - 99 + NaN NaN 127805.3 NaN 18346 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22693 91.14 NaN 634950 35 0 88667 0.261 + 7416 FVPLFAENL 9 63 525.2871128521249 1048.5596727710497 2 525.2869873046875 MULTI HCD FTMS 0 0 0 22687 205435.109375 0.3082738060347152 -5 0.147369384765625 6 Unmodified _FVPLFAENL_ ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2 20.453626601364224 0.18364154288633264 2 [YN]{I|L}{I|L}[WE]V{I|L} 8 6 + 43.083 0 0 4.1088 4.1088 83.612 0 0 0 4.283343794609138 2.6405959138647717 2.6405959138647717 6.131382658072312 0 0.4247425010840047 1.0969100130080565 0 0.3252574989159953 [YN]{I|L}{I|L}[WE]V{I|L};[YN]{I|L}{I|L}[W{I|L}]D{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}S{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}V{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{[MS]|[{M(Oxidation (M))|F}A]}[EP]{M(Oxidation (M))|F}V{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}[WE]V{I|L};[{M(Oxidation (M))|F}V][SG]{I|L}[WE]V{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}Y{I|L}[W{I|L}]D{I|L};[{M(Oxidation (M))|F}V][SG]{I|L}[W{I|L}]D{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}[W{I|L}]YN{I|L} 4.1088;3.5241;2.9433;2.8795;2.8309;2.4434;2.2462;1.5833;0.2964 -;-;-;-;-;-;-;-;- 404 NaN NaN 190517.4 NaN 18347 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22694 91.143 NaN 90664 35 0 9318.2 0.262 + 30254 VKCSVKVS 8 51 425.2470854582856 848.4796179833712 2 425.2469177246094 MULTI HCD FTMS 0 0 0 22687 10553.4619140625 0.2118938197700442 1 -0.0261383056640625 7 Unmodified _VKCSVKVS_ REV__nc|ENSG00000211950|A0A0C4DH33|IGHV1-24 2.302733041254933 0.5385759549224092 2 M{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3 -1 5.4576 0 0 0.64322 0 0 424.32826407887745 0 424.32826407887745 0 1.2763625255165323 0 0 0 0 0 0 0 M{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 0.64322 - 21 + NaN NaN 108440 NaN 18348 4344 22687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22696 91.148 NaN 3882800 35 0 1240600 0.327 + 22705 QYAPLLAVF 9 66 511.28969676329564 1020.5648405933913 2 511.2898254394531 MULTI HCD FTMS 0 0 0 22695 1890225.75 0.6695336582013833 1 -0.02951812744140625 1 Unmodified _QYAPLLAVF_ ENSG00000136261|ENST00000258761|BZW2 89.42679046578446 0.004540987215715461 2 [{I|L}T]{I|L}[MN]{I|L}AV 8 6 69.857 0 0 6.8449 0 0 0 162.05763883196826 162.05763883196826 40.67410004652736 0 0 0 0 2 1.3010299956639813 1.1747425010840047 1.0484550065040281 [{I|L}T]{I|L}[MN]{I|L}AV 6.8449 - 234 NaN NaN 629660.6 NaN 18349 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22697 91.153 NaN 2025700 35 0 93904 0.261 -1 0 114 633.3693349814924 1264.7241170297848 2 633.3692016601562 MULTI HCD FTMS 0 0 0 22695 2585191 0.8394634941945321 -4 0.1244659423828125 2 NaN NaN 2 {[HG]|PP}N 3 -1 10.234 0 0 0.80918 0 0 0 953.517192256157 953.517192256157 -0.24563781748735636 0 -0.24563781748735636 0 0 0.7302046884880937 0 0 0 {[HG]|PP}N 0.80918 - 186 + NaN NaN 405497.9 NaN 18350 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22698 91.156 NaN 3551600 35 0 848900 0.263 + 30515 VMPSSFFLL 9 93 528.7749143837757 1055.5352758343513 2 528.7749633789062 MULTI HCD FTMS 0 0 0 22695 1382138.75 0.7347834324298694 -1 0.0261383056640625 3 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 89.42679046578446 0.004540987215715461 2 {I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 7 6 64.007 0 0 6.064 0 0 172.08442885566564 0 172.08442885566564 0 30.40705219359991 0 0 0 1.0941876774005248 0 1.860924374808178 0 {I|L}S{I|L}{M(Oxidation (M))|F}YE{I|L} 6.064 - 1185 NaN NaN 629660.9 NaN 18351 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22699 91.16 NaN 487780 35 0 32637 0.262 -1 0 84 422.5819131158917 1264.7239099478752 3 422.5820007324219 MULTI HCD FTMS 0 0 0 22695 283418.90625 0.666956533569345 -3 0.0883636474609375 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 0.9661 0 0 1099.6451726205298 0 1099.6451726205298 0 -0.34440644703906287 -0.34440644703906287 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.9661 - 79 + NaN NaN 164877 NaN 18352 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22700 91.163 NaN 881620 35 0 252930 0.261 + -1 VWTDTCALL 9 85 539.765854106331 1077.5171552794618 2 539.766357421875 MULTI HCD FTMS 0 0 0 22695 228211 0.7127597005663426 -2 0.05551910400390625 5 Carbamidomethyl (C) _VWTDTC(Carbamidomethyl (C))ALL_ REV__ENSG00000196071|ENST00000358120|OR2L13 21.74664581756881 0.17247014374749275 2 VWS{I|L}{M(Oxidation (M))|F}Y[YT] 8 -1 + 36.429 0 0 3.3808 3.3808 86.188 0 0 0 11.74794978616871 2.764209843288903 2.764209843288903 11.110673115137551 0 0.28872548999643577 0 0.28872548999643577 0 VWS{I|L}{M(Oxidation (M))|F}Y[YT];{I|L}[DG]C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}S{I|L}[PG];V{M(Oxidation (M))|F}[PS]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S{I|L}[PG];[DG]{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}S{I|L}[PG];V{[DA]|[EG]}C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}S{I|L}[PG];V{M(Oxidation (M))|F}[PS]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Q{I|L}[PG];{I|L}[DG]S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];[DG]{I|L}S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG];[DG]{I|L}C(Carbamidomethyl (C)){[WT]|[RM]}T{I|L}{I|L};V{[DA]|[EG]}S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG] 3.3808;2.3497;2.3428;2.2758;2.181;1.9285;1.8876;1.8137;1.743;1.719 -;-;-;-;-;-;-;-;-;- 1158 + NaN NaN 220970.4 NaN 18353 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22701 91.166 NaN 480000 35 0 51315 0.261 + 17517 LYTSLGSSISA 11 79 549.7875710395788 1097.5605891459575 2 550.287353515625 MULTI HCD FTMS 0 0 0 22695 88991.078125 0.44233479884369425 1 -0.02951812744140625 6 Unmodified _LYTSLGSSISA_ ENSG00000151150|ENST00000280772|ANK3 34.40172386719151 0.17300472122796048 2 [YT]{I|L}S{I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 9 7 + 70.856 0 0 6.4558 6.4558 87.637 0 0 0 7.20159303405957 12.174165578762484 7.20159303405957 7.20159303405957 0 0.5 1.3979400086720375 0.805462187404089 0 [YT]{I|L}S{I|L}E{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]TS{I|L}E{M(Oxidation (M))|F}{I|L}{I|L};[YT]{I|L}SG[KG]K[MN];[Y{I|L}]TSG[KG]K[MN];{[QN]|[E{I|L}]|[KN]}WYYV{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F}[WY]{I|L}{I|L};[YT]{I|L}[PG][C(Carbamidomethyl (C))K]{M(Oxidation (M))|F}{I|L};[Y{I|L}]T[PG][C(Carbamidomethyl (C))K]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}W[RH][MN]{I|L};{[QN]|[E{I|L}]|[KN]}W[RH]{I|L}[MN] 6.4558;5.7997;3.7028;3.0466;2.4524;2.0457;1.4265;0.77037;0.59632;0.25348 -;-;-;-;-;-;-;-;-;- 1076 NaN NaN 161843.8 NaN 18354 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22702 91.17 NaN 59223 35 0 7923.5 0.262 + 33310 YFRSTYKEPQ 10 37 440.21912431954934 1317.635543558848 3 440.2196350097656 MULTI HCD FTMS 0 0 0 22695 24245.806640625 0.5099594024128505 4 -0.114715576171875 7 Unmodified _YFRSTYKEPQ_ REV__ENSG00000183783|ENST00000360029|KCTD8 0.776531954647913 0.4711933975711956 2 G 1 -1 1.2591 0 0 0.095554 0 0 890.3854652891199 367.1971834772094 1257.5826487663294 0 0 0 0 0 0 0 0 0 G 0.095554 - 6 + NaN NaN 92422.8 NaN 18355 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22703 91.173 NaN 61320 35 0 4114.5 0.261 + 32571 WIVEIDAL 8 42 479.7658970423816 957.5172411515632 2 479.76593017578125 MULTI HCD FTMS 0 0 0 22695 9249.4833984375 0.09449898771085366 5 -0.13759613037109375 8 Unmodified _WIVEIDAL_ REV__ENSG00000113812|ENST00000335754|ACTR8;REV__nc|ENSG00000113812|Q9H981-2|ACTR8 5.760428011301431 0.5334459684533844 2 RAN 3 -1 23.188 0 0 2.4216 0 0 598.3470428224484 0 598.3470428224484 0 20.088643834802156 0 0 0 0 0 0 0 RAN 2.4216 - 13 NaN NaN 110288.2 NaN 18356 4345 22695 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22705 91.178 NaN 898280 35 0 75463 0.327 + 2195 DIHVTCEVL 9 78 514.7582578947412 1027.5019628562823 2 515.2772827148438 MULTI HCD FTMS 0 0 0 22704 28005.34375 0.10739822379736193 6 -0.16053009033203125 1 Unmodified _DIHVTCEVL_ REV__ENST00000463943.1_1_20:49457108-49457342:+|nuORF 15.847184025352803 0.2234401846867398 2 EV{I|L}EYV{M(Oxidation (M))|F} 7 -1 38.426 0 0 3.7397 0 0 130.06548888584513 0 130.06548888584513 0 2.85264957886929 0 0 0 0 0 0.28872548999643577 0 EV{I|L}EYV{M(Oxidation (M))|F} 3.7397 - 703 + NaN NaN 224245.4 NaN 18357 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22706 91.182 NaN 304580 35 0 18441 0.261 + 21291 PRVLDAMLPYL 11 76 644.3604176827344 1286.7062824322686 2 644.3599853515625 MULTI HCD FTMS 0 0 0 22704 176556.921875 0.7892524034891926 -1 0.02951812744140625 2 Unmodified _PRVLDAMLPYL_ ENSG00000244005|ENST00000374092|NFS1;ENST00000421540.1_1_20:34280185-34287249:-|nuORF;nc|ENSG00000244005|Q9Y697-2|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1 3.2813086475875832 0.40452996145431686 2 P{[HG]|PP}N 4 9 4.2699 0 0 0.33184 0 0 863.4584217755875 0 863.4584217755875 0 1.1709124234504085 0 0 0 0 0 0 0 P{[HG]|PP}N 0.33184 - 143 NaN NaN 142959.8 NaN 18358 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22707 91.186 NaN 318290 35 0 37812 0.262 + 35043 YTKESASSIL 10 63 549.7875710395788 1097.5605891459575 2 550.287109375 MULTI HCD FTMS 0 0 0 22704 167642.703125 0.8332768062462445 2 -0.05902099609375 3 Unmodified _YTKESASSIL_ ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant 27.628801355627647 0.2527626205058048 2 [YT]{I|L}S{I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 9 5 + 70.416 0 0 6.4157 6.4157 93.11 0 0 0 18.741436528314566 28.10525350536075 18.741436528314566 33.51342204748164 0 0.5 1.3979400086720375 0.7614393726401688 0 [YT]{I|L}S{I|L}E{M(Oxidation (M))|F}{I|L}{I|L};[YT]{I|L}SG[KG]K[MN];[YT]{[DS]|[MA]|[CV]|TT}[C(Carbamidomethyl (C))K]V{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}[HN]V{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}WYYV{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}N{M(Oxidation (M))|F}[HN]V{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}E{M(Oxidation (M))|F}[HN]V{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}MS{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}V{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}GG{M(Oxidation (M))|F}[HN]V{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}W[RH][MN]{I|L} 6.4157;3.3623;2.7247;2.5225;2.4553;1.974;1.9274;1.5352;1.135;0.33258 -;-;-;-;-;-;-;-;-;- 480 NaN NaN 137756.9 NaN 18359 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22708 91.189 NaN 523590 35 0 125600 0.263 + 25589 SFVGYGCY 8 55 448.18628560503936 894.3580182768787 2 448.18609619140625 MULTI HCD FTMS 0 0 0 22704 38742.296875 0.4173247781574561 6 -0.16053009033203125 4 Unmodified _SFVGYGCY_ ENSG00000158786|ENST00000375102|PLA2G2F;nc|ENSG00000158786|Q9BZM2|PLA2G2F 0.7936320650641473 0.540814922690045 2 H 1 8 6.5938 0 0 0.73727 0 0 396.2854337776632 357.99482141666255 754.2802551943257 0 0 0 0 0 0.3494850021680094 0 0 0 H 0.73727 - 4 + NaN NaN 169591.9 NaN 18360 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22709 91.192 NaN 406470 35 0 92286 0.261 -1 YFEELITML 9 62 587.7887695612784 1173.5629861893567 2 587.7896728515625 MULTI HCD FTMS 0 0 0 22704 95691.0078125 0.31807038384037317 12 -0.33359527587890625 5 Oxidation (M) _YFEELITM(Oxidation (M))L_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 30.636539890814138 0.10832830463492794 2 {I|L}T{M(Oxidation (M))|F}{I|L} 4 -1 35.918 0 0 3.0606 0 0 681.3008931912362 0 681.3008931912362 0 9.719712763997563 0 0 0 1 0 0 0 {I|L}T{M(Oxidation (M))|F}{I|L} 3.0606 + + 109 NaN NaN 161184.7 NaN 18361 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22710 91.196 NaN 106390 35 0 16817 0.261 -1 QDGRCYFVM 9 47 596.2478068270916 1190.4810607209831 2 596.2451782226562 MULTI HCD FTMS 0 0 0 22704 22737.68359375 0.8083850102508997 1 -0.0262298583984375 6 Carbamidomethyl (C),Oxidation (M) _QDGRC(Carbamidomethyl (C))YFVM(Oxidation (M))_ ENST00000377084.3_1_13:84455647-84455719:-|nuORF 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F}[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F} 4 -1 16.198 0 0 1.3606 0 0 631.3324159564902 0 631.3324159564902 0 9.208187539523749 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F} 1.3606 - 12 NaN NaN 101381.8 NaN 18362 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22711 91.199 NaN 66982 35 0 6055.1 0.263 -1 AYMVMTYLFVS 11 46 452.88057903161894 NaN 0 452.8805236816406 PEAK HCD FTMS 0 0 0 22704 8648.1865234375 0.4171609919788391 1 -0.0262298583984375 7 2 Oxidation (M) _AYM(Oxidation (M))VM(Oxidation (M))TYLFVS_ ENSG00000267710|ENST00000649256|EDDM13 1.3296431237094175 0.3383483288439026 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 121698.1 NaN 18363 4346 22704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22713 91.204 NaN 1599200 35 0 186520 0.327 -1 0 89 518.8105707854379 1035.6065886376757 2 518.8106079101562 MULTI HCD FTMS 0 0 0 22712 927251.375 0.5722911950298843 1 -0.0327911376953125 1 NaN NaN 2 {NN|[MP]|[D{I|L}]|[EV]}M{I|L}{I|L} 5 -1 13.838 0 0 1.3362 0 0 0 447.28439949509135 447.28439949509135 0.7390874094431865 0 0 0 0 0.3252574989159953 0 0.3494850021680094 1.1861818737241734 {NN|[MP]|[D{I|L}]|[EV]}M{I|L}{I|L} 1.3362 - 187 NaN NaN 341790.2 NaN 18364 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22714 91.208 NaN 2704000 35 0 649940 0.261 + 32381 VYVTTTEMW 9 117 565.2663012904951 1128.5180496477901 2 565.768310546875 MULTI HCD FTMS 0 0 0 22712 999688.3125 0.8981803481781077 3 -0.08184814453125 2 Unmodified _VYVTTTEMW_ ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ 44.40701690623563 0.04511410083598184 2 [YV]VGS{M(Oxidation (M))|F}SQGSV 11 8 + 76.887 0 0 6.8131 6.8131 88.169 0 0 0 8.151348166368138 0.5551732784983017 0.5551732784983017 6.866654986684736 0 1.176935982160881 1.3010299956639813 1.7218487496163561 0 [YV]VGS{M(Oxidation (M))|F}SQGSV;[YV]GVS{M(Oxidation (M))|F}SQGSV;{M(Oxidation (M))|F}GGQS{M(Oxidation (M))|F}SGVP{M(Oxidation (M))|F};[YV]VGS{M(Oxidation (M))|F}S[AG]GSV;[YV]VGS{M(Oxidation (M))|F}SW{[QG]|[NA]};[YV]KD{M(Oxidation (M))|F}SQGSV;{M(Oxidation (M))|F}NQS{M(Oxidation (M))|F}SGVP{M(Oxidation (M))|F};E{I|L}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}SGVP{M(Oxidation (M))|F};{M(Oxidation (M))|F}GGQS{M(Oxidation (M))|F}SVGP{M(Oxidation (M))|F};[YV]GVS{M(Oxidation (M))|F}S[AG]GSV 6.8131;6.2047;6.0908;6.0042;5.827;5.7164;5.6602;5.638;5.4823;5.3958 -;-;-;-;-;-;-;-;-;- 9460 NaN NaN 493771.7 NaN 18365 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22715 91.212 NaN 713690 35 0 236290 0.264 -1 0 34 405.11861942977845 808.2226859263569 2 405.1190490722656 MULTI HCD FTMS 0 0 0 22712 206390.09375 0.07553037567461167 25 -0.6873703002929688 3 NaN NaN 2 V 1 -1 0.48455 0 0 0.059953 0 0 422.05143456092566 284.07431970767817 706.1257542686038 0 0 0 0 0 0 0 0 0 V 0.059953 - 3 + NaN NaN 204747.9 NaN 18366 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22716 91.215 NaN 239380 35 0 69627 0.261 + 10622 IPQLLEAVL 9 34 498.3105602983143 994.6065676634286 2 498.3105773925781 MULTI HCD FTMS 0 0 0 22712 157609.234375 0.34515376242573476 6 -0.15718841552734375 4 Unmodified _IPQLLEAVL_ ENSG00000148803|ENST00000278025|FUOM;nc|ENSG00000148803|A2VDF0-2|FUOM 17.11289562659939 0.2125047172822487 2 EAV{I|L} 4 5 46.938 0 0 4.7193 0 0 564.363348681188 0 564.363348681188 0 39.94850021680094 0 0 0 1.5 0 0 0 + EAV{I|L} 4.7193 + + 19 NaN NaN 119951.5 NaN 18367 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22717 91.219 NaN 693820 35 0 46421 0.261 -1 AEGYTMNVEI 10 107 571.7528961256264 1141.4912393180527 2 572.7582397460938 MULTI HCD FTMS 0 0 0 22712 204238.96875 0.736774460322451 1 -0.0327911376953125 5 Oxidation (M) _AEGYTM(Oxidation (M))NVEI_ ENSG00000157423|ENST00000393567|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF;nc|ENSG00000157423|Q4G0P3-2|HYDIN 20.41453444215458 0.3201613495159799 2 YPVGS{M(Oxidation (M))|F}SWCP 10 -1 + 29.765 0 0 2.6075 2.6075 80.059 0 0 0 0.20842521510426337 0.20842521510426337 0.20842521510426337 0.20842521510426337 0 0.5994850021680094 0 0.6382104921644451 0 YPVGS{M(Oxidation (M))|F}SWCP;[YV]PQ{M(Oxidation (M))|F}S{[DS]|[MA]|[CV]|TT}CP;YPVGS{M(Oxidation (M))|F}AEA{[DS]|[MA]|[CV]|TT};[YV]VG{[MG]|[TS]}D{[DS]|[MA]|[CV]|TT}CP;[YV]VG{[ES]|[DT]|[{I|L}C]}S{[DS]|[MA]|[CV]|TT}CP;[YV]VG{[MG]|[TS]}MWCP;{[DS]|[MA]|[CV]|TT}{[DS]|[MA]|[CV]|TT}S{M(Oxidation (M))|F}SGP{M(Oxidation (M))|F}P;[YV]V{[WS]|[C(Carbamidomethyl (C)){I|L}]}S{[DS]|[MA]|[CV]|TT}CP;YPVQYSWCP;YPRS{M(Oxidation (M))|F}SWCP 2.6075;2.5893;2.3657;2.1652;2.0803;2.0718;2.0478;2.0316;1.8996;1.7824 -;-;-;-;-;-;-;-;-;- 3872 + NaN NaN 198140.1 NaN 18368 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22718 91.222 NaN 380150 35 0 61786 0.261 -1 VYTYCQRY 8 74 576.7602020989434 1151.5058512646867 2 576.760498046875 MULTI HCD FTMS 0 0 0 22712 166187.609375 0.9565741178519044 3 -0.08184814453125 6 Carbamidomethyl (C) _VYTYC(Carbamidomethyl (C))QRY_ ENSG00000112902|ENST00000382496|SEMA5A 12.531546534597751 0.5015908124873912 2 VYVG 4 -1 54.923 0 0 4.7696 0 0 0 730.2598360650999 730.2598360650999 26.893878342760047 0 0 0 0 0.75 2 0 0 VYVG 4.7696 - 179 + NaN NaN 155558.4 NaN 18369 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22719 91.225 NaN 266190 35 0 30068 0.261 -1 FYLMQIVEI 9 50 586.3061532565509 1170.5977535799018 2 586.3057250976562 MULTI HCD FTMS 0 0 0 22712 83232.078125 0.3280476604143134 7 -0.18674468994140625 7 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 32.30548876998284 0.10066689432505688 2 VE{I|L} 3 -1 39.253 0 0 3.3532 0 0 811.3938960267468 0 811.3938960267468 0 11.62794683835358 0 0 0 0.9247425010840047 0 0.3807196863200844 0 VE{I|L} 3.3532 + + 233 NaN NaN 132623.3 NaN 18370 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22720 91.229 NaN 326320 35 0 40370 0.261 + 33204 YFDLLGELM 9 68 558.76755821645 1115.5205634996998 2 558.7676391601562 MULTI HCD FTMS 0 0 0 22712 56293.3828125 0.5175318877166248 -2 0.05574798583984375 8 Oxidation (M) _YFDLLGELM(Oxidation (M))_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 41.8396318013385 0.056899836730939755 2 {I|L}{I|L}GE{I|L}{M(Oxidation (M))|F} 6 3 49.473 0 0 4.4349 0 0 425.15576965379984 0 425.15576965379984 0 33.09759349306532 0 0 0 2.1237125054200234 0 0.23965182871044374 0 + {I|L}{I|L}GE{I|L}{M(Oxidation (M))|F} 4.4349 + + 270 + NaN NaN 141308.9 NaN 18371 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22721 91.232 NaN 162370 35 0 17734 0.261 + 7875 FYTFPFQQL 9 55 595.7981505374305 1189.581748141661 2 595.7967529296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _FYTFPFQQL_ ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF 17.11289562659939 0.2125047172822487 2 QQ{I|L} 3 6 29.253 0 0 2.4591 0 0 802.370897361525 0 802.370897361525 0 26.778259348524358 0 0 0 0.3054621874040891 0 0 0 + QQ{I|L} 2.4591 + + 28 NaN NaN 121950.6 NaN 18372 4347 22712 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22723 91.237 NaN 1531800 35 0 74447 0.327 -1 0 122 641.8826105638228 1281.7506681944456 2 641.882568359375 MULTI HCD FTMS 0 0 0 22722 1318521.125 0.7990259281577513 -1 0.0327911376953125 1 NaN NaN 2 A[RV]N 4 -1 12.224 0 0 0.95366 0 0 823.4730188099912 0 823.4730188099912 0 3.327731244245342 0 0 0 0.3494850021680094 0 0 0.3807196863200844 A[RV]N 0.95366 - 478 NaN NaN 328246.8 NaN 18373 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22724 91.241 NaN 199840 35 0 10130 0.261 -1 0 88 619.8696707185969 1237.7247885039938 2 619.8697509765625 MULTI HCD FTMS 0 0 0 22722 158655.4375 0.08449816686138348 48 -1.3281784057617188 2 NaN NaN 2 V 1 -1 6.1536 0 0 0.49717 0 0 867.5056855760625 268.12336145572505 1135.6290470317876 0 0 0 0 0 0.3054621874040891 0 0 0 V 0.49717 - 144 + NaN NaN 114297.1 NaN 18374 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22725 91.245 NaN 275390 35 0 15898 0.261 -1 MWSSFLCIT 9 90 580.7581692767477 1159.5017856202953 2 580.7561645507812 MULTI HCD FTMS 0 0 0 22722 137545.40625 0.8081392786873688 2 -0.0490570068359375 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))WSSFLC(Carbamidomethyl (C))IT_ ENST00000314891.10_1_15:34654487-34657250:-|nuORF 25.399314129420986 0.14091189997036632 2 [YV]VGS{M(Oxidation (M))|F}S 7 -1 53.518 0 0 4.6156 0 0 0 417.12370879828285 417.12370879828285 40.75388845183398 0 0 0 0 2.426935982160881 1.6989700043360187 0.3252574989159953 0 [YV]VGS{M(Oxidation (M))|F}S 4.6156 - 850 NaN NaN 135406.7 NaN 18375 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22726 91.248 NaN 406870 35 0 48524 0.261 + 18955 NAIEDTIFYL 10 51 599.8034447420434 1197.5923365508868 2 599.8035278320312 MULTI HCD FTMS 0 0 0 22722 206969.46875 0.7076727573540332 -3 0.08853912353515625 4 Unmodified _NAIEDTIFYL_ ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 90.13494162714682 0.000992056157953851 2 EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 7 3 74.429 0 0 6.2149 0 0 298.1628764684012 0 298.1628764684012 0 68.23145724778165 0 0 0 2.610924374808178 0 1.1989700043360187 0 + EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 6.2149 + + 162 NaN NaN 157222.2 NaN 18376 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22727 91.251 NaN 233660 35 0 21064 0.261 + 15928 LPNLEDIYTSL 11 56 639.3347709527486 1276.6549889722971 2 639.3346557617188 MULTI HCD FTMS 0 0 0 22722 56248.50390625 0.49253556184239194 4 -0.10150909423828125 5 Unmodified _LPNLEDIYTSL_ ENSG00000198646|ENST00000359003|NCOA6 21.666072377320713 0.2683052127874542 2 D{I|L}YTS{I|L} 6 5 57.868 0 0 4.5328 0 0 566.3065663068375 0 566.3065663068375 0 49.90926274548464 0 0 0 1.9247425010840047 0 0.5 0 + D{I|L}YTS{I|L} 4.5328 + + 121 NaN NaN 122204.5 NaN 18377 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22728 91.255 NaN 139920 35 0 12423 0.262 -1 MPATVFMLF 9 56 544.7608849109746 1087.507216888749 2 544.7607421875 MULTI HCD FTMS 0 0 0 22722 36927.35546875 0.42792793119042005 10 -0.27457427978515625 6 2 Oxidation (M) _M(Oxidation (M))PATVFM(Oxidation (M))LF_ ENSG00000109133|ENST00000504986|TMEM33 23.1484247019978 0.1603590852062899 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 33.812 0 0 3.1092 0 0 662.3111242147241 0 662.3111242147241 0 17.614393726401687 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.1092 + + 42 + NaN NaN 109518.2 NaN 18378 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22729 91.258 NaN 71289 35 0 15929 0.262 -1 CEPTRTLMSFV 11 39 452.88057903161894 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 22722 14408.4140625 0.6950160345021371 3 -0.07860565185546875 7 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))EPTRTLM(Oxidation (M))SFV_ ENSG00000176040|ENST00000452346|TMPRSS7;nc|ENSG00000176040|Q7RTY8-2|TMPRSS7;nc|ENSG00000176040|Q7RTY8-3|TMPRSS7 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99003.8 NaN 18379 4348 22722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22731 91.263 NaN 940940 35 0 184660 0.327 + 20231 NYLPAINGIVF 11 92 610.8376895460312 1219.6608261588624 2 611.3563842773438 MULTI HCD FTMS 0 0 0 22730 19533.75 0.08760288430268234 -7 0.2030792236328125 1 Unmodified _NYLPAINGIVF_ ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B;nc|ENSG00000079332|Q9NR31-2|SAR1A 10.799506525563784 0.36298595732910816 2 W{M(Oxidation (M))|F} 2 10 18.583 0 0 1.5237 0 0 868.4864163535134 0 868.4864163535134 0 11.593793813122062 0 0 0 0 0 0 0 W{M(Oxidation (M))|F} 1.5237 - 79 NaN NaN 236690.5 NaN 18380 4349 22730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22732 91.267 NaN 476020 35 0 119220 0.261 + 10059 IFDWVEANL 9 88 553.7799596133523 NaN 0 553.79248046875 PEAK HCD FTMS 0 0 0 22730 6822.92626953125 0.21670162009252938 2 -0.05242919921875 2 Unmodified _IFDWVEANL_ ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3 18.1463463914782 0.1998403495282098 2 AE[CS]EP 6 8 19.09 0 0 1.7268 0 0 245.1429137561982 241.15520654849846 486.2981203046967 0 0 0 0 0 1.079689690656103 0 0.3054621874040891 0 AE[CS]EP 1.7268 - 295 + NaN NaN 160915.7 NaN 18381 4349 22730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22733 91.271 NaN 162690 35 0 7580.6 0.262 -1 0 66 437.25743752493037 1308.7504831749911 3 437.2575378417969 MULTI HCD FTMS 0 0 0 22730 58520.70703125 0.31390666374774184 12 -0.330352783203125 3 NaN NaN 2 Q 1 -1 8.0989 0 0 0.61883 0 0 810.4784627665912 367.1969088190063 1177.6753715855975 0 0 0 0 0 0.5 0 0 0 Q 0.61883 - 12 + NaN NaN 113579.4 NaN 18382 4349 22730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22734 91.274 NaN 587810 35 0 36074 0.261 + 17182 LYLYRCIT 8 90 522.7815438890923 1043.5485348449845 2 522.2809448242188 MULTI HCD FTMS 0 0 0 22730 106720.46875 0.3389437966790792 5 -0.127777099609375 4 Unmodified _LYLYRCIT_ ENSG00000164023|ENST00000690982|SGMS2;ENSG00000198964|ENST00000361781|SGMS1;nc|ENSG00000198964|Q86VZ5-2|SGMS1 24.67388899826682 0.4122521268485776 2 [Y{I|L}]{[HG]|PP}P{I|L}MT{I|L} 9 6 + 31.18 0 0 2.9879 2.9879 80.798 0 0 0 10.378195371247049 9.78810700930062 9.78810700930062 1.6017446508904918 0 0 2 0 0 [Y{I|L}]{[HG]|PP}P{I|L}MT{I|L};[Y{I|L}]{[HG]|PP}PTM{I|L}{I|L};[Y{I|L}]{[HG]|PP}PVV{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[CT]|[{M(Oxidation (M))|F}G]}[YR]{I|L}{I|L};[Y{I|L}]VV{[CP]|[EA]}HT{I|L};{I|L}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P[HT]T{I|L} 2.9879;2.8344;2.2894;2.0524;0.96677;0.53259 -;-;-;-;-;- 707 NaN NaN 179426.7 NaN 18383 4349 22730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22735 91.278 NaN 149750 35 0 9231.5 0.261 + 19660 NVLQRHNLAL 10 68 589.3431377166484 1176.6717225000966 2 589.34423828125 MULTI HCD FTMS 0 0 0 22730 37226.3359375 0.1261719098365014 12 -0.330352783203125 5 Unmodified _NVLQRHNLAL_ REV__ENSG00000085382|ENST00000262903|HACE1;REV__nc|ENSG00000085382|Q8IYU2-2|HACE1;REV__nc|ENSG00000085382|Q8IYU2-3|HACE1 3.2813086475875832 0.45793521633868084 2 YY{I|L}{[VA]|[{I|L}G]}K{I|L} 7 -1 13.153 0 0 1.1178 0 0 0 323.1563776116779 323.1563776116779 7.668432240108771 0 0 0 0 0 2 0 0 YY{I|L}{[VA]|[{I|L}G]}K{I|L} 1.1178 - 144 NaN NaN 112954.8 NaN 18384 4349 22730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22736 91.281 NaN 129910 35 0 18457 0.261 + 34098 YNLVLMLQLH 10 47 622.3475807826734 1242.6806086321467 2 622.3466186523438 MULTI HCD FTMS 0 0 0 22730 38561.0625 0.12987611419756726 55 -1.52197265625 6 Unmodified _YNLVLMLQLH_ REV__ENST00000324545.8_2_X:41057853-41057919:+|nuORF 3.5964929083625545 0.45626689593999237 2 [YN]{I|L}P 4 -1 26.911 0 0 2.1656 0 0 0 752.4195667222435 752.4195667222435 19.463950151760656 0 0 0 0 0 1.5228787452803376 0 0 [YN]{I|L}P 2.1656 - 32 NaN NaN 122335.8 NaN 18385 4349 22730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22738 91.286 NaN 1870900 35 0 88355 0.327 -1 0 116 633.3693349814924 1264.7241170297848 2 633.3694458007812 MULTI HCD FTMS 0 0 0 22737 2642910.75 0.8582062575025565 1 -0.02954864501953125 1 NaN NaN 2 {[HG]|PP}N[R{I|L}]TQ 7 -1 12.338 0 0 0.97555 0 0 0 455.2492137953691 455.2492137953691 1.4968459532817882 0 0 0 0 1.1989700043360187 0 0.3807196863200844 0 {[HG]|PP}N[R{I|L}]TQ 0.97555 - 239 + NaN NaN 377460.8 NaN 18386 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22739 91.29 NaN 1122800 35 0 364190 0.263 + -1 RKCKIAVF 8 73 511.3035543991342 1020.5925558650684 2 511.2896728515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _RKC(Carbamidomethyl (C))KIAVF_ REV__ENSG00000165194|ENST00000373034|PCDH19;REV__nc|ENSG00000165194|Q8TAB3-2|PCDH19;REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 11.114462752807354 0.5120171699125776 2 T{I|L}[EP]{I|L}AV{M(Oxidation (M))|F} 8 -1 32.115 0 0 3.1467 0 0 132.10337237073094 0 132.10337237073094 0 1.0095628692308622 0 0 0 0 0 0 0 T{I|L}[EP]{I|L}AV{M(Oxidation (M))|F} 3.1467 - 354 + NaN NaN 256153.9 NaN 18387 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22740 91.294 NaN 1030100 35 0 208050 0.261 + 15550 LPDQAFFVL 9 59 525.2871128521249 1048.5596727710497 2 525.2871704101562 MULTI HCD FTMS 0 0 0 22737 537459.25 0.806505806578679 1 -0.02954864501953125 3 Unmodified _LPDQAFFVL_ ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-2|IL33;nc|ENSG00000137033|O95760-3|IL33;nc|ENSG00000137033|O95760-4|IL33 27.628801355627647 0.12213550946336599 2 {M(Oxidation (M))|F}V{I|L} 3 6 35.445 0 0 3.3804 0 0 671.3276691064749 0 671.3276691064749 0 26.49288766643714 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.3804 + + 77 NaN NaN 243083.5 NaN 18388 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22741 91.297 NaN 793610 35 0 77105 0.261 + -1 TPFLLCTLE 9 88 547.2842496322652 1092.5539463313303 2 548.2899169921875 MULTI HCD FTMS 0 0 0 22737 58284.74609375 0.2580112173504833 3 -0.07534027099609375 4 Carbamidomethyl (C) _TPFLLC(Carbamidomethyl (C))TLE_ REV__ENSG00000152292|ENST00000469800|SH2D6 21.74664581756881 0.17247014374749275 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[W{I|L}]TE 8 -1 32.005 0 0 2.9294 0 0 0 126.06264929447401 126.06264929447401 8.356179868154658 0 0 0 0 0 1.2218487496163564 0.8807196863200843 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S[W{I|L}]TE 2.9294 - 2045 NaN NaN 210142.5 NaN 18389 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22742 91.301 NaN 444550 35 0 54057 0.261 + 27976 TFDVSLLTI 9 57 504.7844119533098 1007.5542709734196 2 504.7843933105469 MULTI HCD FTMS 0 0 0 22737 113249.640625 0.4719204795841982 -4 0.1080780029296875 5 Unmodified _TFDVSLLTI_ ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF 123.45060196383646 0.0010021686353097689 2 [{M(Oxidation (M))|F}T]DVS{I|L}{I|L}T{I|L} 9 0 + 72.15 0 0 7.1609 7.1609 95.477 0 0 0 3.2568864632742844 50.098812726971715 3.2568864632742844 63.787756685520094 0 2.079689690656103 0 1.2302046884880937 0 + + [{M(Oxidation (M))|F}T]DVS{I|L}{I|L}T{I|L};[{I|L}T]{I|L}{[TV]|[{I|L}S]}[DV][{M(Oxidation (M))|F}T] 7.1609;0.82997 +;- + 114 NaN NaN 156267.5 NaN 18390 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22743 91.304 NaN 240960 35 0 46510 0.261 + 15299 LPALEVLDL 9 37 491.794698900384 981.574844867568 2 491.7946472167969 MULTI HCD FTMS 0 0 0 22737 105755.6015625 0.543202669834539 -2 0.0490570068359375 6 Unmodified _LPALEVLDL_ ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1 43.85829265575387 0.04763305254408404 2 EV{I|L}D{I|L} 5 4 55.701 0 0 5.6747 0 0 394.25865370918126 0 394.25865370918126 0 24.27440017027358 0 0 0 1.9247425010840047 0 0 0 + EV{I|L}D{I|L} 5.6747 + + 36 NaN NaN 137829.4 NaN 18391 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22744 91.307 NaN 343130 35 0 25544 0.261 + 26740 SYDVFQLEF 9 70 574.2690857084168 1146.5236184836335 2 574.2682495117188 MULTI HCD FTMS 0 0 0 22737 58285.1640625 0.02710839201433715 10 -0.2779693603515625 7 Unmodified _SYDVFQLEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 53.40400417844725 0.026808823219830042 2 [YV]V{M(Oxidation (M))|F}CQ{I|L}ET 9 4 64.108 0 0 5.5915 0 0 0 61.03361680257709 61.03361680257709 47.147642715192504 0 0 0 0 1.7302046884880937 1.2218487496163564 0.3494850021680094 0 [YV]V{M(Oxidation (M))|F}CQ{I|L}ET 5.5915 - 1737 NaN NaN 166161.8 NaN 18392 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22745 91.31 NaN 171880 35 0 20978 0.261 + 18962 NAILDLSVF 9 52 496.2766302688117 990.5387076044234 2 496.2767639160156 MULTI HCD FTMS 0 0 0 22737 27667.876953125 0.2986947170458046 2 -0.05245208740234375 8 Unmodified _NAILDLSVF_ ENSG00000184898|ENST00000331426|RBM43 34.93206674587334 0.08860942999206235 2 C(Carbamidomethyl (C)){I|L}D{I|L}SV{M(Oxidation (M))|F} 7 3 53.917 0 0 5.4432 0 0 138.12880141425939 0 138.12880141425939 0 42.490310234698384 0 0 0 2.0994850021680094 0 0.4247425010840047 0 C(Carbamidomethyl (C)){I|L}D{I|L}SV{M(Oxidation (M))|F} 5.4432 - 71 NaN NaN 130999.5 NaN 18393 4350 22737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22747 91.315 NaN 2847100 35 0 606250 0.327 + 30516 VMPSSFFLL 9 95 528.7749143837757 1055.5352758343513 2 528.7750244140625 MULTI HCD FTMS 0 0 0 22746 1010588.875 0.5372571764939955 5 -0.13112640380859375 1 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 77.98433622928108 0.006504613272346738 2 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE 8 7 57.037 0 0 5.4036 0 0 0 128.07016836139772 128.07016836139772 19.773911279506407 0 0 0 0 0.6861818737241735 1.0969100130080565 1.8851518780601921 0 [TA]{I|L}S{I|L}{M(Oxidation (M))|F}YE 5.4036 - 1182 NaN NaN 521834.2 NaN 18394 4351 22746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22748 91.32 NaN 564530 35 0 36945 0.262 -1 0 95 422.5819131158917 1264.7239099478752 3 422.5818786621094 MULTI HCD FTMS 0 0 0 22746 379348.875 0.8927040684443781 3 -0.075347900390625 2 NaN NaN 2 N 1 -1 8.8564 0 0 0.70026 0 0 150.08972594208518 997.5436707794465 1147.6333967215317 0 0 0 0 0 0.6382104921644451 0 0 0 N 0.70026 - 48 + NaN NaN 177281.8 NaN 18395 4351 22746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22749 91.323 NaN 286700 35 0 21229 0.261 + -1 ITCFPLTEL 9 57 547.2842496322652 1092.5539463313303 2 547.2821655273438 MULTI HCD FTMS 0 0 0 22746 117865.6171875 0.4002943384620087 5 -0.13112640380859375 3 Carbamidomethyl (C) _ITC(Carbamidomethyl (C))FPLTEL_ REV__ENST00000557029.5_1_14:59824035-59826179:+|nuORF 39.957323273324995 0.06554068735427583 2 {I|L}{[DS]|[MA]|[CV]|TT}TE{I|L} 6 -1 44.13 0 0 4.0391 0 0 416.2060506931536 0 416.2060506931536 0 33.33281569033012 0 0 0 0.7742275032520141 0 1.274227503252014 0 {I|L}{[DS]|[MA]|[CV]|TT}TE{I|L} 4.0391 - 89 NaN NaN 134548 NaN 18396 4351 22746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22750 91.327 NaN 664270 35 0 159230 0.261 -1 TPFSCLSLPG 10 78 539.765854106331 1077.5171552794618 2 539.7661743164062 MULTI HCD FTMS 0 0 0 22746 146028.4375 0.4560831221399094 4 -0.098236083984375 4 Carbamidomethyl (C) _TPFSC(Carbamidomethyl (C))LSLPG_ ENST00000493504.1_1_19:59093379-59093973:+|nuORF 20.453626601364224 0.3197956946484955 2 VWS{I|L}{M(Oxidation (M))|F}Y[YT] 8 -1 + 40.839 0 0 3.7901 3.7901 82.927 0 0 0 17.1277502416482 0.7142421095707618 0.7142421095707618 5.427965835756439 0 0.3494850021680094 0 0 0 VWS{I|L}{M(Oxidation (M))|F}Y[YT];[DG]{I|L}S{I|L}N[{I|L}P]C{M(Oxidation (M))|F};{I|L}[DG]S{I|L}N[{I|L}P]C{M(Oxidation (M))|F};[DG]{I|L}S{I|L}GG[{I|L}P]C{M(Oxidation (M))|F};TA{I|L}S[W{M(Oxidation (M))|F}]S{I|L}[PG];{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}ND[TP]{M(Oxidation (M))|F};V{M(Oxidation (M))|F}[PS]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}S{I|L}[PG];{I|L}[DG]C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}S{I|L}[PG];[DG]{I|L}C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}S{I|L}[PG];{I|L}[DG]S{I|L}[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}[PG] 3.7901;3.2864;2.9175;2.4358;2.3334;2.2373;2.141;1.994;1.8988;1.8468 -;-;-;-;-;-;-;-;-;- 990 + NaN NaN 184447 NaN 18397 4351 22746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22751 91.33 NaN 339550 35 0 21358 0.261 + 3709 ELWSIVPSAF 10 76 574.8029964004111 1147.591439867622 2 575.2938232421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ELWSIVPSAF_ REV__ENST00000565768.1_2_16:56651429-56652137:+|nuORF 10.823927491677226 0.4098686510432541 2 [YT]{[CP]|[EA]}{M(Oxidation (M))|F}E{I|L}E 8 -1 40.155 0 0 3.4991 0 0 0 162.12364136592205 162.12364136592205 11.483259264971153 0 0 0 0 0.5 2 0.3807196863200844 0 [YT]{[CP]|[EA]}{M(Oxidation (M))|F}E{I|L}E 3.4991 - 641 NaN NaN 148341.3 NaN 18398 4351 22746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22752 91.333 NaN 71976 35 0 6942.6 0.264 + 808 AVGHHISE 8 37 425.2147118255925 NaN 0 425.2152404785156 PEAK HCD FTMS 0 0 0 22746 34947.44921875 0.6237629388384356 -85 2.1615142822265625 6 Unmodified _AVGHHISE_ ENST00000523504.5_1_8:22880186-22926453:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89612.4 NaN 18399 4351 22746 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22754 91.338 NaN 328040 35 0 20470 0.327 + 28049 TGIFLDLMHLK 11 73 644.3604176827344 1286.7062824322686 2 644.3601684570312 MULTI HCD FTMS 0 0 0 22753 208140.96875 0.9304407785655184 5 -0.14349365234375 1 Unmodified _TGIFLDLMHLK_ ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6 2.9952420565917617 0.40578455234410343 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 3 9 6.7166 0 0 0.522 0 0 0 895.511036420803 895.511036420803 2.112541000813872 0 0 0 0 0 0 0.3494850021680094 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 0.522 - 52 NaN NaN 144476.8 NaN 18400 4352 22753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22755 91.343 NaN 347240 35 0 28914 0.263 -1 VYMGLLAVF 9 49 514.7769156895566 1027.5392784459132 2 515.277587890625 MULTI HCD FTMS 0 0 0 22753 128836.828125 0.3568384011638248 6 -0.173065185546875 2 Oxidation (M) _VYM(Oxidation (M))GLLAVF_ DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1 36.466142684027034 0.08156716203802528 2 {I|L}AV{M(Oxidation (M))|F} 4 -1 44.909 0 0 4.3706 0 0 579.272033951598 0 579.272033951598 0 20.116071290099242 0 0 0 1.774227503252014 0 0 0 {I|L}AV{M(Oxidation (M))|F} 4.3706 + + 198 NaN NaN 138343.8 NaN 18401 4352 22753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22756 91.346 NaN 606340 35 0 107930 0.261 + 11269 IYLPYLQNW 9 75 605.3186867667113 1208.6228206002224 2 605.3187866210938 MULTI HCD FTMS 0 0 0 22753 228881.3125 0.4630227369249943 -4 0.10150909423828125 3 Unmodified _IYLPYLQNW_ ENSG00000151116|ENST00000396197|UEVLD;ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD 131.29775728308752 0.0005262696486345744 2 [Y{I|L}]{I|L}PY{I|L}QNW 9 0 + 99.887 0 0 8.2646 8.2646 92.423 0 0 0 0.5411342943241237 0.5411342943241237 0.5411342943241237 9.208187539523749 0 3.274227503252014 1.6989700043360187 0 1.7302046884880937 + + [Y{I|L}]{I|L}PY{I|L}QNW;[Y{I|L}]{I|L}PY{I|L}[AG]NW;[Y{I|L}]{I|L}PY{I|L}QGGW;[Y{I|L}]{I|L}PY{I|L}[AG]GGW;[Y{I|L}]{I|L}PYA{[VA]|[{I|L}G]}NW;[Y{I|L}]{I|L}PY{[YC]|[HE]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}][WP]YP[KG][VS];{[DS]|[MA]|[CV]|TT}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YP[KG]W;[RH]P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}QNW;[RH]P{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}[AG]NW 8.2646;7.5027;7.4579;6.6997;6.3792;4.3519;4.0881;3.9414;3.5704;2.8085 +;-;-;-;-;-;-;-;-;- + 827 + NaN NaN 184203.9 NaN 18402 4352 22753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22757 91.35 NaN 232910 35 0 23201 0.261 + 17518 LYTSLGSSISA 11 66 549.7875710395788 1097.5605891459575 2 550.2870483398438 MULTI HCD FTMS 0 0 0 22753 73286.1875 0.3642728202517072 8 -0.22551727294921875 4 Unmodified _LYTSLGSSISA_ ENSG00000151150|ENST00000280772|ANK3 21.536976647645854 0.2694300281126922 2 [YT]{I|L}S{I|L}E{M(Oxidation (M))|F}{I|L}{I|L} 9 7 + 46.582 0 0 4.2441 4.2441 89.418 0 0 0 5.6424927368725974 27.408489773514187 5.6424927368725974 27.435012637084167 0 0.5 0 0.7302046884880937 0 [YT]{I|L}S{I|L}E{M(Oxidation (M))|F}{I|L}{I|L};Y{[NV]|[RG]}SG[W{M(Oxidation (M))|F}]{I|L}{I|L};[YT]{I|L}[DP][YT]{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}[KG]C(Carbamidomethyl (C))[HK]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[EP]{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}V{I|L}{I|L} 4.2441;1.7445;1.2592;0.80483;0.12661 -;-;-;-;- 773 NaN NaN 116595.1 NaN 18403 4352 22753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22758 91.353 NaN 378820 35 0 26350 0.261 + 26976 SYLNSFFQL 9 75 559.7791535529088 1117.5437541726176 2 559.7803344726562 MULTI HCD FTMS 0 0 0 22753 179687.890625 0.6426582545305632 -2 0.05245208740234375 5 Unmodified _SYLNSFFQL_ ENSG00000165424|ENST00000372336|ZCCHC24 143.90916361153978 1.5265063399744E-05 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 90.927 0 0 8.1363 8.1363 92.233 0 0 0 4.137342758552691 67.73895634497293 4.137342758552691 9.208187539523749 0 2.5994850021680094 0 0.9559771852360797 1.1549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}MSS{M(Oxidation (M))|F}K{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}[Q{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}[Q{I|L}]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{[WN]|[YH]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TN{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[MS]|[{M(Oxidation (M))|F}A]}[H{I|L}]MQ{I|L} 8.1363;7.3123;6.6589;5.4588;4.8113;4.5683;3.4316;3.0974;2.579;1.9345 +;-;-;-;-;-;-;-;-;- + 1223 NaN NaN 145272.1 NaN 18404 4352 22753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22759 91.356 NaN 351050 35 0 39883 0.261 -1 MAAPQTLALL 10 85 522.7906680617845 1043.5667831903688 2 522.7907104492188 MULTI HCD FTMS 0 0 0 22753 84897.390625 1 0 0 6 Oxidation (M) _M(Oxidation (M))AAPQTLALL_ ENSG00000267534|ENST00000646641|S1PR2 32.78568957990786 0.20801173326193015 2 {I|L}A{[WT]|[RM]}Y{I|L}{M(Oxidation (M))|F} 7 -1 36.168 0 0 3.4658 0 0 131.09723519035032 0 131.09723519035032 0 24.662968532911968 0 0 0 0.8494850021680094 0 0.28872548999643577 0.6861818737241735 {I|L}A{[WT]|[RM]}Y{I|L}{M(Oxidation (M))|F} 3.4658 - 172 + NaN NaN 141716 NaN 18405 4352 22753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22761 91.361 NaN 276900 35 0 82385 0.327 -1 0 38 405.11861942977845 808.2226859263569 2 405.1190490722656 MULTI HCD FTMS 0 0 0 22760 60906.51171875 0.022289304818668535 31 -0.873046875 1 NaN NaN 2 V 1 -1 0.9691 0 0 0.11991 0 0 422.0522280179569 284.07502229876127 706.1272503167181 0 0 0 0 0 0 0 0 0 V 0.11991 - 5 + NaN NaN 145203.7 NaN 18406 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22762 91.366 NaN 327020 35 0 28182 0.261 + 29541 TYWGLFEL 8 55 514.7582578947412 1027.5019628562823 2 515.2772827148438 MULTI HCD FTMS 0 0 0 22760 5747.00830078125 0.022039311110137735 13 -0.3695526123046875 2 Unmodified _TYWGLFEL_ REV__ENSG00000168090|ENST00000303904|COPS6;REV__ENST00000474823.5_1_7:99688002-99688155:+|nuORF;REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF 8.593279151180031 0.5292430274356741 2 S{I|L}AV{M(Oxidation (M))|F} 5 -1 30.177 0 0 2.937 0 0 492.24446303535314 0 492.24446303535314 0 -1.726307269461742 -1.726307269461742 0 0 0 0 0 0 S{I|L}AV{M(Oxidation (M))|F} 2.937 - 226 NaN NaN 129898.8 NaN 18407 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22763 91.369 NaN 337640 35 0 28319 0.261 -1 FYLMQIVEI 9 73 586.3061532565509 1170.5977535799018 2 586.3057250976562 MULTI HCD FTMS 0 0 0 22760 36145.62109375 0.14246293858263487 13 -0.3695526123046875 3 Oxidation (M) _FYLM(Oxidation (M))QIVEI_ ENSG00000137975|ENST00000370565|CLCA2 36.506200033944 0.08138327636155518 2 {I|L}VE{I|L} 4 -1 43.8 0 0 3.7417 0 0 698.3081532209 0 698.3081532209 0 6.109243748081781 0 0 0 1.1861818737241734 0 0 0 {I|L}VE{I|L} 3.7417 + + 787 NaN NaN 155760 NaN 18408 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22764 91.372 NaN 124440 35 0 26465 0.264 + 10532 IPFLIKKFFF 10 44 433.9327176859468 NaN 0 433.9328308105469 PEAK HCD FTMS 0 0 0 22760 43739.02734375 0.8197251182127853 1 -0.0295562744140625 4 Unmodified _IPFLIKKFFF_ ENST00000460140.5_1_2:202050494-202070750:+|nuORF 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107007 NaN 18409 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22765 91.376 NaN 198270 35 0 14574 0.261 + 7654 FYISQLAYW 9 58 595.7981505374305 1189.581748141661 2 595.7984619140625 MULTI HCD FTMS 0 0 0 22760 35535.60546875 0.5642374371923969 -2 0.0457916259765625 5 Unmodified _FYISQLAYW_ ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1;nc|ENSG00000067167|Q15629-2|TRAM1 26.268140514670165 0.13340543277302316 2 {I|L}AYW 4 5 40.974 0 0 3.4444 0 0 638.3060780255875 0 638.3060780255875 0 33.984484532805155 0 0 0 1.1421590589602533 0 0 0 + {I|L}AYW 3.4444 + + 132 NaN NaN 126743.4 NaN 18410 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22766 91.379 NaN 188710 35 0 25888 0.261 + -1 NYLPAMRFCA 10 65 621.7897474600096 1241.5649419868191 2 621.790283203125 MULTI HCD FTMS 0 0 0 22760 35150.0390625 0.6023588121018667 -1 0.02288818359375 6 Carbamidomethyl (C) _NYLPAMRFC(Carbamidomethyl (C))A_ REV__ENSG00000198626|ENST00000366574|RYR2;REV__ENSG00000198838|ENST00000634891|RYR3;REV__nc|ENSG00000198626|Q92736-2|RYR2;REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198838|Q15413-3|RYR3 13.042465956692817 0.38911719078024076 2 {I|L}{I|L}C{M(Oxidation (M))|F} 4 -1 36.414 0 0 2.9329 0 0 747.3085804669937 0 747.3085804669937 0 6.436303437153299 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}C{M(Oxidation (M))|F} 2.9329 - 163 NaN NaN 120468.1 NaN 18411 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22767 91.382 NaN 138920 35 0 18828 0.261 + -1 HGYYGSPCSHL 11 53 639.272057998176 1276.529563063152 2 639.2723388671875 MULTI HCD FTMS 0 0 0 22760 19675.525390625 0.531466844352155 1 -0.0295562744140625 7 Carbamidomethyl (C) _HGYYGSPC(Carbamidomethyl (C))SHL_ REV__ENSG00000147655|ENST00000276659|RSPO2;REV__nc|ENSG00000147655|Q6UXX9-2|RSPO2 2.9952420565917617 0.40578455234410343 2 [YR]Y[HC][EP]Y{M(Oxidation (M))|F} 9 -1 + 17.342 0 0 1.3585 1.3585 86.896 0 0 0 1.5398434942549972 1.5398434942549972 1.5398434942549972 17.34182484690081 0 0.5 0 0 0 [YR]Y[HC][EP]Y{M(Oxidation (M))|F} 1.3585 - 32 NaN NaN 112673 NaN 18412 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22768 91.386 NaN 72955 35 0 13028 0.263 + 34136 YPAESVLAY 9 36 506.7530303597173 1011.4915077862346 2 507.2567443847656 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YPAESVLAY_ ENSG00000181019|ENST00000320623|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF;nc|ENSG00000181019|P15559-2|NQO1;nc|ENSG00000181019|P15559-3|NQO1 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 9 14.604 0 0 1.4438 0 0 846.4123889891628 0 846.4123889891628 0 7.385606273598311 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4438 - 6 + NaN NaN 118892.5 NaN 18413 4353 22760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22770 91.391 NaN 1125700 35 0 56721 0.327 -1 0 111 641.8826105638228 1281.7506681944456 2 641.8825073242188 MULTI HCD FTMS 0 0 0 22769 1143458.25 0.6929375435800379 5 -0.14684295654296875 1 NaN NaN 2 ND[RV]ATK 7 -1 12.362 0 0 0.96449 0 0 123.09144968749622 371.17092490431213 494.26237459180834 0 0 0 0 0 0.3494850021680094 0 0.6861818737241735 0.6747425010840047 ND[RV]ATK 0.96449 - 427 + NaN NaN 261782 NaN 18414 4354 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22771 91.395 NaN 355180 35 0 46357 0.261 + 18956 NAIEDTIFYL 10 49 599.8034447420434 1197.5923365508868 2 599.8035278320312 MULTI HCD FTMS 0 0 0 22769 265700.09375 0.9084852906512939 3 -0.0910491943359375 2 Unmodified _NAIEDTIFYL_ ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 80.6760300276096 0.004935188130137892 2 EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 7 3 73.638 0 0 6.1488 0 0 298.16356093574376 0 298.16356093574376 0 67.4396447873054 0 0 0 2.610924374808178 0 1.1989700043360187 0 + EDT{I|L}{M(Oxidation (M))|F}Y{I|L} 6.1488 + + 168 NaN NaN 164258.3 NaN 18415 4354 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22772 91.399 NaN 99182 35 0 6012.6 0.261 -1 0 54 619.8696707185969 1237.7247885039938 2 619.8696899414062 MULTI HCD FTMS 0 0 0 22769 94055.0546875 0.05009270296923119 54 -1.5158843994140625 3 NaN NaN 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}P 4 -1 12.216 0 0 0.98696 0 0 130.21766067371874 598.3161104791624 728.5337711528812 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}P 0.98696 - 56 + NaN NaN 124975.8 NaN 18416 4354 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22773 91.402 NaN 195670 35 0 20803 0.261 + 13610 KYPENFFLL 9 60 585.8134525913252 1169.6123522494504 2 585.813720703125 MULTI HCD FTMS 0 0 0 22769 67259.1640625 0.12952088615840857 -21 0.579986572265625 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 2 {I|L}N{I|L}{I|L} 4 6 29.285 0 0 2.5038 0 0 698.3090687482437 0 698.3090687482437 0 18.750612633917 0 0 0 0.4247425010840047 0 0 0 {I|L}N{I|L}{I|L} 2.5038 - 180 NaN NaN 130946.9 NaN 18417 4354 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22774 91.405 NaN 124120 35 0 14866 0.263 + 16356 LRYFAALKCRL 11 39 451.93257571415285 1352.7758977426586 3 451.9325866699219 MULTI HCD FTMS 0 0 0 22769 40575.73828125 0.2821070748946545 -8 0.21297454833984375 5 Unmodified _LRYFAALKCRL_ REV__ENSG00000087274|ENST00000683351|ADD1;REV__ENST00000503169.5_1_4:2877642-2906862:+|nuORF;REV__ENST00000508684.5_1_4:2877642-2900342:+|nuORF;REV__ENST00000509039.5_1_4:2877642-2901297:+|nuORF;REV__nc|ENSG00000087274|P35611-2|ADD1;REV__nc|ENSG00000087274|P35611-3|ADD1;REV__nc|ENSG00000087274|P35611-4|ADD1;REV__nc|ENSG00000087274|P35611-5|ADD1;REV__nc|ENSG00000087274|P35611-6|ADD1;REV__nc|ENSG00000087274|P35611|ADD1 0.40826533853263924 0.41713015341995335 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110326.5 NaN 18418 4354 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22775 91.409 NaN 205580 35 0 24764 0.261 + 34292 YPDSDAVLICF 11 66 621.7897474600096 1241.5649419868191 2 621.7904052734375 MULTI HCD FTMS 0 0 0 22769 58353.98828125 1 0 0 6 Unmodified _YPDSDAVLICF_ ENSG00000108830|ENST00000587250|RND2;ENSG00000115963|ENST00000263895|RND3 17.11289562659939 0.30797719109864646 2 {I|L}{I|L}C{M(Oxidation (M))|F} 4 7 40.662 0 0 3.275 0 0 747.3084555411828 0 747.3084555411828 0 4.618806617312643 0 0 0 1.3494850021680094 0 0 0 + {I|L}{I|L}C{M(Oxidation (M))|F} 3.275 + + 241 NaN NaN 140412.1 NaN 18419 4354 22769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22777 91.414 NaN 1188700 35 0 138900 0.327 + 20232 NYLPAINGIVF 11 81 610.8376895460312 1219.6608261588624 2 610.837646484375 MULTI HCD FTMS 0 0 0 22776 316655.15625 0.8787010303288615 1 -0.03289031982421875 1 Unmodified _NYLPAINGIVF_ ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B;nc|ENSG00000079332|Q9NR31-2|SAR1A 96.36657018975838 0.015470569860761748 2 [YN]{I|L}PA{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 11 0 + 74.023 0 0 6.0692 6.0692 87.789 0 0 0 23.44310204183924 16.575773191777934 16.575773191777934 9.128498242811006 0 2.443672679568534 1.0969100130080565 0 1.2198565171985374 + + [YN]{I|L}PA{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[YN]{I|L}PA{I|L}GG{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]NPA{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[YN]{I|L}PA{I|L}[Q{I|L}]AA{M(Oxidation (M))|F};[Y{I|L}]NPA{I|L}GG{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[QP]{M(Oxidation (M))|F}[VS]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]GGPA{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[QP][YV]A{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[YN]{I|L}PT[K{I|L}][QP]{M(Oxidation (M))|F};[Y{I|L}]{I|L}G[QP]N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 6.0692;5.3207;4.1471;3.7491;3.3986;2.9675;2.9156;2.7856;2.0948;2.0938 +;-;-;-;-;-;-;-;-;- + 672 NaN NaN 268230.2 NaN 18420 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22778 91.418 NaN 447020 35 0 91382 0.261 + 23603 RPGPPGEPGPF 11 83 554.2810020597983 1106.5474511863965 2 553.792236328125 MULTI HCD FTMS 0 0 0 22776 13337.431640625 0.7248342557270139 -3 0.0753326416015625 2 Unmodified _RPGPPGEPGPF_ REV__COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;REV__ENSG00000188153|ENST00000328300|COL4A5;REV__ENST00000470339.1_1_X:107683355-107812096:+|nuORF;REV__nc|ENSG00000188153|P29400|COL4A5 12.240655878213236 0.35042917576941135 2 EP{I|L}N 4 -1 30.433 0 0 2.7503 0 0 635.2962428475272 0 635.2962428475272 0 12.888436070378347 0 0 0 0 0 0 0 EP{I|L}N 2.7503 - 229 NaN NaN 156503.9 NaN 18421 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22779 91.422 NaN 1058100 35 0 123330 0.261 + 15749 LPFLPDSPR 9 88 521.2883961180848 NaN 0 521.3026123046875 PEAK HCD FTMS 0 0 0 22776 7935.27587890625 0.3227981581364559 4 -0.12395477294921875 3 Unmodified _LPFLPDSPR_ ENSG00000109667|ENST00000264784|SLC2A9;ENST00000505104.5_1_4:9882098-10027590:-|nuORF;nc|ENSG00000109667|Q9NRM0-2|SLC2A9 19.438996006549623 0.19116380746473294 2 Q{I|L}DP{I|L} 5 6 17.959 0 0 1.7259 0 0 117.05104638084147 354.1823824518188 471.23342883266025 0 0 0 0 0 0 0 0.3494850021680094 0 Q{I|L}DP{I|L} 1.7259 - 295 + NaN NaN 257048.4 NaN 18422 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22780 91.425 NaN 233180 35 0 20601 0.261 + -1 EAENATDREM 10 64 591.2419974479711 NaN 0 591.26123046875 PEAK HCD FTMS 0 0 0 22776 10755.4853515625 0.4537110853209185 2 -0.0681610107421875 4 Oxidation (M) _EAENATDREM(Oxidation (M))_ REV__ENSG00000145309|ENST00000273936|CABS1 17.11289562659939 0.30402175129113823 2 YDA{M(Oxidation (M))|F}N 5 -1 31.555 0 0 2.6731 0 0 165.04256706915334 402.16611658267817 567.2086836518315 0 0 0 0 0 0 0 0.3252574989159953 0.75 YDA{M(Oxidation (M))|F}N 2.6731 - 208 + NaN NaN 134283.1 NaN 18423 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22781 91.428 NaN 108980 35 0 6045.4 0.264 -1 0 49 437.25743752493037 1308.7504831749911 3 437.2572937011719 MULTI HCD FTMS 0 0 0 22776 83390.1875 0.4473072332062785 18 -0.50396728515625 5 NaN NaN 2 Q 1 -1 5.4846 0 0 0.41907 0 0 960.5599141826068 217.10810266666252 1177.6680168492694 0 0 0 0 0 0.5 0 0 0 Q 0.41907 - 4 + NaN NaN 105116 NaN 18424 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22782 91.432 NaN 904110 35 0 131250 0.261 + 33466 YHIIYCDSF 9 87 580.7581692767477 1159.5017856202953 2 579.7680053710938 MULTI HCD FTMS 0 0 0 22776 6976.32080078125 0.08824443255184071 9 -0.26474761962890625 6 Unmodified _YHIIYCDSF_ REV__nc|ENSG801|P63132|HERVK_113_pro;REV__nc|ENSG814|P63133|ERVK-8_pol;REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG832|P63136|ERVK-25_pol;REV__nc|ENSG844|Q9WJR5|ERVK-19_pol;REV__nc|ENSG851|Q9QC07|ERVK-18_pol;REV__nc|ENSG853|Q9UQG0|ERVK-11;REV__nc|ENSG855|P10266|ERVK-10_pol 8.593279151180031 0.2858735984551981 2 SNVHQQ{I|L}S{M(Oxidation (M))|F} 9 -1 37.233 0 0 3.2112 0 0 101.01963514454572 0 101.01963514454572 0 8.989320782248157 0 0 0 0 0 0.8882104921644451 0.6747425010840047 SNVHQQ{I|L}S{M(Oxidation (M))|F} 3.2112 - 943 + NaN NaN 251518.5 NaN 18425 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22783 91.435 NaN 152460 35 0 13586 0.262 + 26551 SVMLELVAL 9 50 487.7832761825571 973.5519994319142 2 487.7830810546875 MULTI HCD FTMS 0 0 0 22776 95591.6328125 1 0 0 7 Unmodified _SVMLELVAL_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 57.47134341890925 0.0211188941628804 2 GE{I|L}VA{I|L} 6 4 68.237 0 0 7.0091 0 0 373.19966323066564 0 373.19966323066564 0 61.247293946369794 0 0 0 1.9247425010840047 0 1.110924374808178 0 GE{I|L}VA{I|L} 7.0091 - 73 NaN NaN 111062.7 NaN 18426 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22784 91.438 NaN 80746 35 0 16749 0.261 + 33201 YFDIPLEHRE 10 43 440.21912431954934 1317.635543558848 3 440.2187805175781 MULTI HCD FTMS 0 0 0 22776 5548.12548828125 0.11669311730692238 13 -0.36949920654296875 8 Unmodified _YFDIPLEHRE_ ENSG00000100557|ENST00000216445|CCDC198 2.0860074813731053 0.46426213543441425 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98083.8 NaN 18427 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22785 91.442 NaN 82837 35 0 8001.9 0.261 -1 MMCMNCGC 8 42 499.1213658090716 NaN 0 498.81201171875 PEAK HCD FTMS 0 0 0 22776 26626.32421875 0.7523570418871832 4 -0.12395477294921875 9 Carbamidomethyl (C),3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))M(Oxidation (M))NCGC_ ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5 0.7936320650641473 0.38822285293237185 2 D 1 -1 4.6041 0 0 0.46215 0 0 515.0486570558402 363.1339510553344 878.1826081111747 0 0 0 0 0 0 0 0 0 D 0.46215 - 3 + NaN NaN 125191.1 NaN 18428 4355 22776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22787 91.447 NaN 1243900 35 0 56962 0.327 -1 0 101 633.3693349814924 1264.7241170297848 2 633.369384765625 MULTI HCD FTMS 0 0 0 22786 1695627.875 0.5506044624173415 7 -0.19240570068359375 1 NaN NaN 2 {[HG]|PP}N[WR]{I|L}MV 8 -1 10.499 0 0 0.83017 0 0 0 268.12400232486567 268.12400232486567 -0.09959268401089894 0 -0.09959268401089894 0 0 1.1237125054200234 0 0 0 {[HG]|PP}N[WR]{I|L}MV 0.83017 - 206 + NaN NaN 282684.6 NaN 18429 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22788 91.451 NaN 386680 35 0 76762 0.262 + 23530 RNMRNFVL 8 42 525.2871128521249 1048.5596727710497 2 525.2871704101562 MULTI HCD FTMS 0 0 0 22786 213535.03125 0.3204284652484531 7 -0.19240570068359375 2 Unmodified _RNMRNFVL_ ENSG00000177108|ENST00000319374|ZDHHC22 13.50788311687929 0.4944073034352369 2 {M(Oxidation (M))|F}V{I|L} 3 5 35.445 0 0 3.3804 0 0 671.3272752497879 0 671.3272752497879 0 26.49288766643714 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.3804 + + 23 NaN NaN 138621.2 NaN 18430 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22789 91.455 NaN 335920 35 0 38036 0.261 + 27977 TFDVSLLTI 9 52 504.7844119533098 1007.5542709734196 2 504.7842712402344 MULTI HCD FTMS 0 0 0 22786 145975.8125 0.6082931041768416 2 -0.06484222412109375 3 Unmodified _TFDVSLLTI_ ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF 96.28474662873226 0.004361282420133734 2 S{I|L}{I|L}T{I|L} 5 4 61.414 0 0 6.0954 0 0 462.2111467761207 0 462.2111467761207 0 40.3321441351563 0 0 0 1.610924374808178 0 1.1861818737241734 0 + S{I|L}{I|L}T{I|L} 6.0954 + + 94 NaN NaN 142570.5 NaN 18431 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22790 91.458 NaN 386980 35 0 86621 0.261 + -1 RKCKIAVF 8 45 511.3035543991342 1020.5925558650684 2 511.2895812988281 MULTI HCD FTMS 0 0 0 22786 41125.2109375 0.3826180505826609 1 -0.03527069091796875 4 Carbamidomethyl (C) _RKC(Carbamidomethyl (C))KIAVF_ REV__ENSG00000165194|ENST00000373034|PCDH19;REV__nc|ENSG00000165194|Q8TAB3-2|PCDH19;REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 11.114462752807354 0.5120171699125776 2 AV{M(Oxidation (M))|F} 3 -1 21.682 0 0 2.1245 0 0 685.4081209058872 0 685.4081209058872 0 7.245462655597095 0 0 0 0 0 0 0 AV{M(Oxidation (M))|F} 2.1245 + + 115 + NaN NaN 163977.8 NaN 18432 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22791 91.467 NaN 173730 35 0 16434 0.261 + 15300 LPALEVLDL 9 44 491.794698900384 981.574844867568 2 491.7946472167969 MULTI HCD FTMS 0 0 0 22786 37632.44140625 0.19329512897892134 4 -0.1172943115234375 5 Unmodified _LPALEVLDL_ ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1 18.1463463914782 0.20357593197100715 2 V{I|L}D{I|L} 4 5 36.16 0 0 3.6839 0 0 523.2981652993685 0 523.2981652993685 0 9.961987796517704 0 0 0 1.1747425010840047 0 0 0 + V{I|L}D{I|L} 3.6839 + + 34 NaN NaN 122371.6 NaN 18433 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22792 91.47 NaN 57163 35 0 20398 0.261 + 21916 QDRNANNH 8 20 484.7181899323364 NaN 0 484.7181396484375 PEAK HCD FTMS 0 0 0 22786 37574.5859375 0.5364566079498088 1 -0.03527069091796875 6 Unmodified _QDRNANNH_ ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111302.8 NaN 18434 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22793 91.474 NaN 178550 35 0 23431 0.261 + 34293 YPDSDAVLICF 11 59 621.7897474600096 1241.5649419868191 2 622.2904663085938 MULTI HCD FTMS 0 0 0 22786 59390.9375 1 0 0 7 Unmodified _YPDSDAVLICF_ ENSG00000108830|ENST00000587250|RND2;ENSG00000115963|ENST00000263895|RND3 12.240655878213236 0.35042917576941135 2 {I|L}{I|L}C{M(Oxidation (M))|F} 4 7 31.938 0 0 2.5724 0 0 747.3082752912125 0 747.3082752912125 0 0.6837284479933459 0 0 0 1 0 0 0 + {I|L}{I|L}C{M(Oxidation (M))|F} 2.5724 + + 81 NaN NaN 115773.1 NaN 18435 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22794 91.477 NaN 95243 35 0 9111.4 0.261 + -1 CVHYYLFEM 9 44 639.272057998176 1276.529563063152 2 639.3351440429688 MULTI HCD FTMS 0 0 0 22786 26564.3671875 0.7175452813107365 4 -0.1172943115234375 8 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))VHYYLFEM(Oxidation (M))_ REV__ENST00000572856.1_1_18:3607136-3607283:+|nuORF 4.75600775471527 0.31496297302216103 2 {I|L}[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 4 -1 18.188 0 0 1.4248 0 0 722.290037681446 0 722.290037681446 0 9.208187539523749 0 0 0 0.5 0 0 0 {I|L}[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 1.4248 + + 3 NaN NaN 105999.3 NaN 18436 4356 22786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22796 91.482 NaN 1414000 35 0 238840 0.327 + 30517 VMPSSFFLL 9 96 528.7749143837757 1055.5352758343513 2 528.7754516601562 MULTI HCD FTMS 0 0 0 22795 298464.4375 0.1586720029696731 11 -0.30133819580078125 1 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 53.57557251787612 0.02656881086235134 2 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 8 6 + 48.021 0 0 4.5494 4.5494 88.098 0 0 0 1.437971190131698 11.959417110133295 1.437971190131698 13.309932190414244 0 0.9247425010840047 1.154901959985743 0.8252574989159953 0 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}KP{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};[VP][YG]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]{I|L}{I|L};[YT][W{I|L}][{M(Oxidation (M))|F}T]{I|L}{I|L};[TA]{I|L}[EC]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[TA]VVP{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};[YG][VP]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T]{I|L}{I|L};[VP]{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}KPA{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}KN 4.5494;3.2884;2.2799;2.0211;1.9559;1.5437;1.5317;1.4865;1.339;1.2361 -;-;-;-;-;-;-;-;-;- 1341 NaN NaN 317317.5 NaN 18437 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22797 91.486 NaN 504130 35 0 31037 0.262 -1 0 87 422.5819131158917 1264.7239099478752 3 422.5818786621094 MULTI HCD FTMS 0 0 0 22795 319504.03125 0.7518739803334192 9 -0.2489471435546875 2 NaN NaN 2 QV 2 -1 11.198 0 0 0.8854 0 0 678.404140344107 356.1753328912719 1034.5794732353788 0 0 0 0 0 0.5 0 0 0 QV 0.8854 - 31 + NaN NaN 162500.1 NaN 18438 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22798 91.49 NaN 298190 35 0 49144 0.261 + 32132 VYSIINGIVF 10 65 562.8211661496375 1123.627779366075 2 562.8212280273438 MULTI HCD FTMS 0 0 0 22795 168709.453125 0.8085086484042568 1 -0.029571533203125 3 Unmodified _VYSIINGIVF_ ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3 88.95385435242217 0.0010827080174394257 2 V{I|L}GN{I|L}[TP]V{M(Oxidation (M))|F} 9 6 61.647 0 0 5.4864 0 0 165.07931628544515 0 165.07931628544515 0 54.61303739409743 0 0 0 1.1435078169319297 0 1.110924374808178 1.1989700043360187 V{I|L}GN{I|L}[TP]V{M(Oxidation (M))|F} 5.4864 - 128 + NaN NaN 154118.4 NaN 18439 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22799 91.493 NaN 143380 35 0 8139.5 0.261 + -1 PSLCKPLVQFV 11 54 644.3604176827344 1286.7062824322686 2 644.3602905273438 MULTI HCD FTMS 0 0 0 22795 94004.484375 0.4202229198595729 10 -0.2651519775390625 4 Carbamidomethyl (C) _PSLC(Carbamidomethyl (C))KPLVQFV_ REV__ENSG00000164053|ENST00000320211|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-2|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-3|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP 4.897010918128616 0.3974440401582579 2 E 1 -1 7.7423 0 0 0.60171 0 0 677.4248626098062 477.23031934822734 1154.6551819580336 0 0 0 0 0 0 0 0.4247425010840047 0 E 0.60171 - 11 + NaN NaN 107522.3 NaN 18440 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22800 91.496 NaN 610770 35 0 144690 0.262 + 19948 NYGDIELLF 9 49 542.2716136450466 1082.5286743568931 2 542.2716064453125 MULTI HCD FTMS 0 0 0 22795 269999.84375 0.27051697075421804 -5 0.14349365234375 5 Unmodified _NYGDIELLF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 75.76082778847304 0.0072241045649327805 2 [YN][DG]{I|L}E{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 86.99 0 0 8.0358 8.0358 97.358 0 0 0 23.234543454061978 80.53659033894291 23.234543454061978 86.99024053406376 0 2.5 1.2218487496163564 0.3807196863200844 1.1861818737241734 + + [YN][DG]{I|L}E{I|L}{I|L}{M(Oxidation (M))|F} 8.0358 + + 74 NaN NaN 189382.1 NaN 18441 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22801 91.5 NaN 611770 35 0 172370 0.261 + 2102 DFDVAVVTF 9 56 506.7530303597173 1011.4915077862346 2 506.7525939941406 MULTI HCD FTMS 0 0 0 22795 83165.71875 0.0658489965666417 -7 0.19594573974609375 6 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 53.832793166522166 0.026208976789938845 2 {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F} 9 0 {[{M(Oxidation (M))|F}D]|MM}DV + + 53.197 -0.58033 -0.12187 5.2593 5.2593 62.695 0 0 0 0 29.896504040318312 0 0 0 2.1989700043360187 0 0.3494850021680094 0 + + {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F} 5.2593 + + 165 + NaN NaN 182087.6 NaN 18442 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22802 91.503 NaN 118890 35 0 16695 0.261 + 14430 LEPLNEGF 8 53 459.7322136008474 NaN 0 459.5209045410156 PEAK HCD FTMS 0 0 0 22795 5352.59912109375 0.5388669527745094 -2 0.0681610107421875 7 Unmodified _LEPLNEGF_ ENSG00000103528|ENST00000355377|SYT17 5.230669730166228 0.38822285293237185 2 S 1 8 3.9794 0 0 0.43375 0 0 477.3871855415812 349.99970422916255 827.3868897707437 0 0 0 0 0 0 0 0 0 S 0.43375 - 1 + NaN NaN 114290.9 NaN 18443 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22803 91.506 NaN 237980 35 0 49728 0.261 + 27768 TAVAVFELL 9 43 481.7815862163225 961.5486194994451 2 481.7813415527344 MULTI HCD FTMS 0 0 0 22795 46758.359375 0.22236177618651748 -6 0.1663970947265625 8 Unmodified _TAVAVFELL_ ENST00000527634.5_2_11:66512258-66526561:+|nuORF 36.12702656103203 0.08312389501731911 2 V{M(Oxidation (M))|F}E{I|L}{I|L} 5 4 44.464 0 0 4.6242 0 0 342.18904311347814 0 342.18904311347814 0 36.39198151975222 0 0 0 1 0 0 0 + V{M(Oxidation (M))|F}E{I|L}{I|L} 4.6242 + + 43 NaN NaN 124307.6 NaN 18444 4357 22795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22805 91.511 NaN 959970 35 0 175010 0.327 + -1 NFKPMNKDVT 10 88 605.3006490649238 1208.5867451966476 2 605.31884765625 MULTI HCD FTMS 0 0 0 22804 17134.111328125 0.2020090548092932 -4 0.1206207275390625 1 Oxidation (M) _NFKPM(Oxidation (M))NKDVT_ REV__ENSG00000114742|ENST00000302313|WDR48;REV__nc|ENSG00000114742|Q8TAF3-3|WDR48;REV__nc|ENSG00000114742|Q8TAF3-4|WDR48;REV__nc|ENSG00000114742|Q8TAF3-5|WDR48 20.41453444215458 0.3201613495159799 2 [Y{I|L}]{I|L}PY{I|L}QG{M(Oxidation (M))|F} 9 -1 65.609 0 0 5.4286 0 0 0 111.03837654433292 111.03837654433292 16.396292993866552 0 0 0 0 0.3252574989159953 1.6989700043360187 0 0.7742275032520141 [Y{I|L}]{I|L}PY{I|L}QG{M(Oxidation (M))|F} 5.4286 - 2676 NaN NaN 231264.3 NaN 18445 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22806 91.516 NaN 898940 35 0 153700 0.261 + 15026 LLPFCIRCV 9 90 532.2935902383842 1062.5726275435684 2 532.2935180664062 MULTI HCD FTMS 0 0 0 22804 348054 0.35845675096624446 -5 0.150177001953125 2 Unmodified _LLPFCIRCV_ ENST00000326925.10_1_3:49060685-49060871:+|nuORF 36.04419817259434 0.08350412372117409 2 {I|L}P{I|L}{M(Oxidation (M))|F}[DP]{I|L} 7 7 71.279 0 0 6.7082 0 0 0 264.09613977603755 264.09613977603755 41.58670267357532 0 0 0 0 2.138210492164445 1.6989700043360187 0.23965182871044374 0 {I|L}P{I|L}{M(Oxidation (M))|F}[DP]{I|L} 6.7082 - 685 + NaN NaN 233315.7 NaN 18446 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22807 91.519 NaN 443940 35 0 146260 0.263 -1 0 44 405.11861942977845 808.2226859263569 2 405.11895751953125 MULTI HCD FTMS 0 0 0 22804 172139.640625 0.06299610358551376 36 -0.9878997802734375 3 NaN NaN 2 H 1 -1 5.7133 0 0 0.7069 0 0 416.06734246302483 252.07410608463127 668.1414485476561 0 0 0 0 0 0.5 0 0 0 H 0.7069 - 7 + NaN NaN 166416.1 NaN 18447 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22808 91.523 NaN 252490 35 0 18686 0.261 + 26977 SYLNSFFQL 9 62 559.7791535529088 1117.5437541726176 2 559.7793579101562 MULTI HCD FTMS 0 0 0 22804 126413.5390625 0.4521211979302649 4 -0.114715576171875 4 Unmodified _SYLNSFFQL_ ENSG00000165424|ENST00000372336|ZCCHC24 93.93812099017352 0.0044227730261779084 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L} 9 0 + 87.77 0 0 7.8538 7.8538 91.797 0 0 0 3.65279269351241 63.30584053089659 3.65279269351241 9.208187539523749 0 2.1989700043360187 0 0.7614393726401688 1.2302046884880937 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}NS{M(Oxidation (M))|F}[Q{I|L}]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[CP]|[EA]}[HV]{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}GGS{M(Oxidation (M))|F}[Q{I|L}]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[HV][QP][MT];{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QS]|[NT]}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}N{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[KS]{M(Oxidation (M))|F} 7.8538;7.0298;6.2697;5.109;5.0078;4.0542;3.8038;2.6178;1.8022;1.8022 +;-;-;-;-;-;-;-;-;- + 500 NaN NaN 138571.8 NaN 18448 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22809 91.526 NaN 689060 35 0 80745 0.261 + 20233 NYLPAINGIVF 11 92 610.8376895460312 1219.6608261588624 2 611.356201171875 MULTI HCD FTMS 0 0 0 22804 137811.953125 0.6180443890771643 2 -0.05245208740234375 5 Unmodified _NYLPAINGIVF_ ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B;nc|ENSG00000079332|Q9NR31-2|SAR1A 40.23920728925047 0.13540949088500095 2 [Y{I|L}]N[PA]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 11 2 + 49.139 0 0 4.0289 4.0289 82.901 0 0 0 9.788107009300624 16.575773191777948 9.788107009300624 4.510817784738492 0 2.089136830878453 1.154901959985743 0 0 [Y{I|L}]N[PA]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}PANN{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[YN]{I|L}[PA]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}PANGG{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}PAGGN{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}G[QP]N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}GKS[PA][QP]{M(Oxidation (M))|F};[QP]{M(Oxidation (M))|F}[VS]{I|L}N{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]{I|L}PAN[Q{I|L}]AA{M(Oxidation (M))|F};[Y{I|L}]{I|L}GKS[EP][WK] 4.0289;3.6591;3.2264;2.9107;2.9107;2.9041;2.4702;1.7324;1.6597;1.0892 -;-;+;-;-;-;-;-;-;- + 276 NaN NaN 216854.4 NaN 18449 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22810 91.529 NaN 286450 35 0 24156 0.261 + 6943 FPVNQLFDML 10 73 620.307614273246 1238.600675613292 2 620.3077392578125 MULTI HCD FTMS 0 0 0 22804 95287.84375 0.2990562481071216 -9 0.2483978271484375 6 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 65.47368725323818 0.022948616544343086 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 10 0 + 72.344 0 0 5.8408 5.8408 87.538 0 0 0 2.174617874626037 57.65153777800478 2.174617874626037 9.164539485499255 0 2.774227503252014 0 0 0.4247425010840047 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VN[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGGQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[DS]|[MA]|[CV]|TT}[RV]Q{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[DS]|[MA]|[CV]|TT}[RV][AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGG[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QYY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QN[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[Y{M(Oxidation (M))|F}][DP]{I|L} 5.8408;5.1009;5.1009;5.0344;4.2945;4.021;1.5675;1.5089;1.4023 +;-;-;-;-;-;-;-;- + 378 NaN NaN 157342.7 NaN 18450 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22811 91.533 NaN 911740 35 0 275550 0.261 + 948 AYEIIDQFF 9 73 573.2792684956456 1144.5439840580912 2 573.2794189453125 MULTI HCD FTMS 0 0 0 22804 207746.96875 0.0798581670390072 -6 0.173065185546875 7 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 70.33199760932243 0.0089807860198535 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 85.57 0 0 7.4763 7.4763 91.163 0 0 0 10.740312677277188 13.626590506049325 10.740312677277188 9.208187539523749 0 2.9247425010840047 1.3010299956639813 0.25 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][DV]{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][DV]{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{[SA]|[TG]}[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][VS]GE[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]GE[TP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][VS]GY[{M(Oxidation (M))|F}V][DP];[YV][VS]G{M(Oxidation (M))|F}[YV][DP];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}T]GY[{M(Oxidation (M))|F}V][DP] 7.4763;6.6718;6.5379;5.7334;4.2763;2.868;2.4112;1.7943;1.3467;1.3374 +;-;-;-;-;-;-;-;-;- + 626 NaN NaN 235191.5 NaN 18451 4358 22804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22813 91.538 NaN 631040 35 0 29924 0.327 -1 0 111 641.8826105638228 1281.7506681944456 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22812 727753.4375 0.44101975678882777 10 -0.26837921142578125 1 NaN NaN 2 ND 2 -1 10.896 0 0 0.85012 0 0 123.08989200576328 926.5192547033481 1049.6091467091114 0 0 0 0 0 0.23965182871044374 0 0.3807196863200844 0 ND 0.85012 - 340 + NaN NaN 196411.3 NaN 18452 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22814 91.542 NaN 1419000 35 0 207270 0.262 -1 VMPSSFFLL 9 92 528.7749143837757 1055.5352758343513 2 528.7846069335938 MULTI HCD FTMS 0 0 0 22812 285906.65625 0.151995936901358 13 -0.35378265380859375 2 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 30.224811164608877 0.11021837014094292 2 S{I|L}EY{M(Oxidation (M))|F}{I|L} 6 -1 38.524 0 0 3.6497 0 0 285.16783339668126 0 285.16783339668126 0 6.066147098514705 0 0 0 0.3807196863200844 0 1.086696871556164 0 S{I|L}EY{M(Oxidation (M))|F}{I|L} 3.6497 - 735 NaN NaN 325643.5 NaN 18453 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22815 91.546 NaN 222400 35 0 45289 0.261 + 15906 LPLQLAITL 9 45 491.3208494484538 980.6271459637077 2 491.3208923339844 MULTI HCD FTMS 0 0 0 22812 161831.046875 0.814782453000795 -5 0.14684295654296875 3 Unmodified _LPLQLAITL_ ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 41.8396318013385 0.056899836730939755 2 A{I|L}T{I|L} 4 5 50.433 0 0 5.1429 0 0 564.3618554337637 0 564.3618554337637 0 45.828956512079344 0 0 0 1.5 0 0.3494850021680094 0 + A{I|L}T{I|L} 5.1429 + + 26 NaN NaN 139579.9 NaN 18454 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22816 91.549 NaN 448590 35 0 107820 0.261 + 7220 FSRSFSIWT 9 77 565.7855460955617 NaN 0 565.768798828125 PEAK HCD FTMS 0 0 0 22812 14479.9345703125 0.7221204846080584 3 -0.08849334716796875 4 Unmodified _FSRSFSIWT_ REV__ENST00000514328.5_2_4:114452409-114458504:-|nuORF 11.640296217721598 0.23883959125015683 2 WS{M(Oxidation (M))|F}[SG]VP 7 -1 27.127 0 0 2.4016 0 0 204.1224472542728 162.0562685602172 366.17871581449003 0 0 0 0 0 0.3494850021680094 0 1.031234684152075 0 WS{M(Oxidation (M))|F}[SG]VP 2.4016 - 568 + NaN NaN 165311.5 NaN 18455 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22817 91.552 NaN 549140 35 0 124380 0.261 + 2105 DFDVDSQIR 9 60 547.7585226372298 1093.5024923412595 2 547.758544921875 MULTI HCD FTMS 0 0 0 22812 171936.578125 0.5061734261390389 -3 0.091064453125 5 Unmodified _DFDVDSQIR_ ENSG00000206530|ENST00000393845|CFAP44 9.38312468134398 0.279288223203164 2 QV 2 8 19.464 0 0 1.78 0 0 848.368334400574 0 848.368334400574 0 6.276362525516532 0 0 0 0 0 0 0 QV 1.78 - 50 NaN NaN 177528.7 NaN 18456 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22818 91.556 NaN 135910 35 0 26733 0.261 + 18957 NAIEDTIFYL 10 45 599.8034447420434 1197.5923365508868 2 599.803955078125 MULTI HCD FTMS 0 0 0 22812 25086.927734375 0.08577755661522674 8 -0.20935821533203125 6 Unmodified _NAIEDTIFYL_ ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 10.799506525563784 0.4100970765206026 2 {M(Oxidation (M))|F}Y{I|L} 3 7 22.319 0 0 1.8637 0 0 756.3655737108462 0 756.3655737108462 0 22.319393642848482 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}Y{I|L} 1.8637 + + 13 + NaN NaN 107250 NaN 18457 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22819 91.559 NaN 562920 35 0 111120 0.263 + 887 AYAIITALL 9 52 474.7919756850864 947.5693984369728 2 474.7917175292969 MULTI HCD FTMS 0 0 0 22812 126530.140625 0.2162493908752959 -5 0.14684295654296875 7 Unmodified _AYAIITALL_ ENSG00000181804|ENST00000316549|SLC9A9 109.62928328672726 0.0030029239606406397 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA{I|L}{I|L} 9 0 + 95.856 0 0 10.116 10.116 98.864 0 0 0 17.231975075880328 16.478174818886373 16.478174818886373 51.938200260161125 0 2.6989700043360187 1.3979400086720375 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA{I|L}{I|L};[{I|L}A]T{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L} 10.116;4.6348 +;- + 188 NaN NaN 169315.2 NaN 18458 4359 22812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22821 91.564 NaN 8905300 35 0 1476100 0.327 + 15829 LPIFPDLQV 9 87 521.3025785296874 1040.5906041261746 2 521.3030395507812 MULTI HCD FTMS 0 0 0 22820 6466148.5 0.6996711967154081 -2 0.05245208740234375 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 139.13845188893973 5.0762478717762276E-05 2 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV 9 0 + 88.954 0 0 8.5484 8.5484 91.874 0 0 0 16.267186419914097 44.239225976429836 16.267186419914097 9.018637558036673 0 2.31295299324845 1.3010299956639813 0.7742275032520141 0 + + [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}N{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQ{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}N{I|L};[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}GG{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQV{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PDQ{I|L}V 8.5484;7.6817;7.6817;7.6635;7.5617;6.815;6.7968;6.7968;6.695;6.695 +;-;-;-;-;-;-;-;-;- + 1642 NaN NaN 872161.8 NaN 18459 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22822 91.568 NaN 770470 35 0 65515 0.261 + 20380 NYVEELVEI 9 98 554.2810020597983 1106.5474511863965 2 553.7926025390625 MULTI HCD FTMS 0 0 0 22820 10116.576171875 0.5497940801219385 1 -0.02950286865234375 2 Unmodified _NYVEELVEI_ ENST00000452760.2_1_17:20516367-20517318:+|nuORF 21.74664581756881 0.17247014374749275 2 [YN]Y 3 7 26.082 0 0 2.3571 0 0 0 663.3521993531846 663.3521993531846 0.8054250707356587 0 0 0 0 0 2 0 0.2614393726401688 [YN]Y 2.3571 - 1117 NaN NaN 206028.8 NaN 18460 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22823 91.572 NaN 483050 35 0 66914 0.261 + 20234 NYLPAINGIVF 11 56 610.8376895460312 1219.6608261588624 2 610.8377075195312 MULTI HCD FTMS 0 0 0 22820 91229.96875 0.25315825735111436 6 -0.16692352294921875 3 Unmodified _NYLPAINGIVF_ ENSG00000079332|ENST00000373241|SAR1A;ENSG00000152700|ENST00000402673|SAR1B;nc|ENSG00000079332|Q9NR31-2|SAR1A 28.494509381512117 0.21104904156558496 2 SV{M(Oxidation (M))|F} 3 9 28.06 0 0 2.3006 0 0 868.4822865216812 0 868.4822865216812 0 13.310384486277796 0 0 0 0.4247425010840047 0 0 0 SV{M(Oxidation (M))|F} 2.3006 - 44 NaN NaN 160028.6 NaN 18461 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22824 91.575 NaN 161760 35 0 7919.4 0.264 + 10372 IMFKKRERFV 10 65 451.93257571415285 1352.7758977426586 3 451.9326171875 MULTI HCD FTMS 0 0 0 22820 69605.6953125 0.4839408950370677 -2 0.05245208740234375 4 Unmodified _IMFKKRERFV_ REV__ENSG00000234828|ENST00000636793|IQCM 0.6268255596534771 0.47198581731947004 2 D 1 -1 3.9794 0 0 0.29417 0 0 563.3833329006649 671.3475435846311 1234.730876485296 0 0 0 0 0 0 0 0 0 D 0.29417 - 4 + NaN NaN 119620.9 NaN 18462 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22825 91.578 NaN 120660 35 0 24538 0.261 -1 MVTAFSKCRLM 11 39 434.8822564155568 NaN 0 434.8819580078125 PEAK HCD FTMS 0 0 0 22820 49541.140625 0.6296486021066775 56 -1.5259780883789062 5 Oxidation (M) _MVTAFSKCRLM(Oxidation (M))_ ENST00000522628.5_1_8:52284516-52284555:-|nuORF 1.3296431237094175 0.3383483288439026 2 N 1 -1 2.2185 0 0 0.25566 0 0 491.56219852271676 259.13010584049067 750.6923043632074 0 0 0 0 0 0 0 0 0 N 0.25566 - 1 + NaN NaN 102226.1 NaN 18463 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22826 91.582 NaN 113270 35 0 6118.5 0.261 -1 0 52 437.25743752493037 1308.7504831749911 3 437.2575988769531 MULTI HCD FTMS 0 0 0 22820 73983.84375 0.39685134956409734 23 -0.6408004760742188 6 NaN NaN 2 Q 1 -1 8.9794 0 0 0.6861 0 0 960.5586019267474 217.10784326724846 1177.666445193996 0 0 0 0 0 0.5 0 0 0 Q 0.6861 - 5 + NaN NaN 101569.7 NaN 18464 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22827 91.585 NaN 168960 35 0 36870 0.261 -1 PLLRAMII 8 40 471.7956461687573 NaN 0 471.795654296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _PLLRAM(Oxidation (M))II_ ENSG00000074071|ENST00000397375|MRPS34;ENST00000569585.1_1_16:1822224-1822659:-|nuORF 11.114462752807354 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.58249 0 0 584.3718034310413 207.11338220767814 791.4851856387194 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.58249 + + 3 + NaN NaN 119800.1 NaN 18465 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22828 91.588 NaN 73357 35 0 6926.7 0.261 + 10818 ITAGSAKAIR 10 44 494.30092743872706 986.5873019442541 2 495.79742431640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ITAGSAKAIR_ REV__ENSG00000120438|ENST00000321394|TCP1 2.9952420565917617 0.4594494122822477 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.2385 0 0 821.5079084889792 0 821.5079084889792 0 1.249387366082999 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2385 - 10 + NaN NaN 104043.3 NaN 18466 4360 22820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22830 91.593 NaN 1014400 35 0 42544 0.327 -1 0 95 633.3693349814924 1264.7241170297848 2 633.369384765625 MULTI HCD FTMS 0 0 0 22829 1341614 0.43564903958752105 12 -0.32427978515625 1 NaN NaN 2 N 1 -1 9.3361 0 0 0.73819 0 0 238.14255141842415 909.4921725910442 1147.6347240094683 0 0 0 0 0 0.6861818737241735 0 0 0 N 0.73819 - 261 + NaN NaN 248402.7 NaN 18467 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22831 91.598 NaN 588520 35 0 109500 0.261 + 35734 YYLNFISAI 9 65 552.2923437361416 1102.570134539083 2 552.2929077148438 MULTI HCD FTMS 0 0 0 22829 201850.609375 0.29587628256795945 -3 0.0819549560546875 2 Unmodified _YYLNFISAI_ ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 96.28474662873226 0.004361282420133734 2 {I|L}SA{I|L} 4 5 42.652 0 0 3.8684 0 0 700.3219200634967 0 700.3219200634967 0 13.214562785677657 0 0 0 1.5 0 0.3494850021680094 0 + {I|L}SA{I|L} 3.8684 + + 81 NaN NaN 184278.8 NaN 18468 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22832 91.601 NaN 283300 35 0 28811 0.261 + -1 PIPQCMQFF 9 61 584.2702984759591 1166.526044018718 2 584.2705078125 MULTI HCD FTMS 0 0 0 22829 118209.4296875 0.38882538441549686 -3 0.0819549560546875 3 Carbamidomethyl (C) _PIPQC(Carbamidomethyl (C))MQFF_ REV__ENSG00000176393|ENST00000295640|RNPEP;REV__ENST00000478617.5_1_1:201952590-201969135:+|nuORF 15.847184025352803 0.2234401846867398 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D 6 -1 57.635 0 0 4.9408 0 0 0 459.16639981389307 459.16639981389307 18.937587049193432 0 0 0 0 2 2 0.23965182871044374 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D 4.9408 - 230 NaN NaN 147683.1 NaN 18469 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22833 91.605 NaN 189170 35 0 23095 0.261 + 23531 RNMRNFVL 8 50 525.2871128521249 1048.5596727710497 2 525.2866821289062 MULTI HCD FTMS 0 0 0 22829 37031.68359375 0.05556936241351093 12 -0.32427978515625 4 Unmodified _RNMRNFVL_ ENSG00000177108|ENST00000319374|ZDHHC22 13.50788311687929 0.4944073034352369 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 6 4 42.652 0 0 4.0676 0 0 230.16324050117345 0 230.16324050117345 0 35.66183773464459 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4.0676 - 66 NaN NaN 117023.4 NaN 18470 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22834 91.608 NaN 272320 35 0 21926 0.261 -1 FPSWAMELL 9 67 555.270183267913 1108.525813602626 2 555.270751953125 MULTI HCD FTMS 0 0 0 22829 55588.28125 0.17651064164209349 19 -0.5078582763671875 5 Oxidation (M) _FPSWAM(Oxidation (M))ELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 10.823927491677226 0.26684000660059787 2 {[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]}VN{I|L} 9 -1 + 25.116 0 0 2.2657 2.2657 80.608 0 0 0 7.816658315635085 8.421459525132278 7.816658315635085 1.7609125905568135 0 0 0 0.3054621874040891 0 {[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]}VN{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]}V{I|L}N;{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]}VGG{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}D]|MM}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VN{I|L};{[{M(Oxidation (M))|F}D]|MM}{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VN{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}D]|MM}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L}N 2.2657;2.1069;1.4351;0.29868;0.13983;0.13983 -;-;-;-;-;- 96 NaN NaN 131356.9 NaN 18471 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22835 91.611 NaN 344430 35 0 34194 0.261 + 20252 NYLPFIMEL 9 78 578.2912552508974 1154.5679575685947 2 578.2911376953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 45.69961567697781 0.039180348357221985 2 [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 44.345 0 0 3.8408 3.8408 86.781 0 0 0 8.444714783643796 3.718553028398688 3.718553028398688 11.805234507957884 0 1.5994850021680094 0 0 0.4247425010840047 + + [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[RN][NG]{I|L}D[QP];{[QN]|[E{I|L}]|[KN]}[{I|L}V][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP] 3.8408;2.8184;0.7784;0.51869 +;-;-;- + 612 NaN NaN 146157.7 NaN 18472 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22836 91.615 NaN 88502 35 0 6193.3 0.263 + 29832 VERRRLERRT 10 43 457.6082767141141 1369.8030007425423 3 457.60833740234375 MULTI HCD FTMS 0 0 0 22829 50406.48046875 0.9906940899732528 -7 0.20257568359375 7 Unmodified _VERRRLERRT_ ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant 0.6976657623105312 0.47161084886498755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 104232.3 NaN 18473 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22837 91.618 NaN 405860 35 0 36886 0.261 -1 0 87 494.30092743872706 986.5873019442541 2 494.3012390136719 MULTI HCD FTMS 0 0 0 22829 124745.234375 0.11019440725455826 -7 0.20257568359375 8 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 5.0886 0 0 0.51578 0 0 396.2365644922091 427.3028963678344 823.5394608600435 0 0 0 0 0 0.2614393726401688 0 0 0 C(Carbamidomethyl (C)) 0.51578 - 19 + NaN NaN 161231.4 NaN 18474 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22838 91.621 NaN 72722 35 0 8325.4 0.261 + -1 ALVMEIVLA 9 40 487.7832761825571 973.5519994319142 2 487.7833557128906 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _ALVM(Oxidation (M))EIVLA_ REV__ENSG00000123360|ENST00000243052|PDE1B;REV__ENST00000548855.5_1_12:54966399-54967542:+|nuORF;REV__nc|ENSG00000123360|Q01064-2|PDE1B 7.910154910731844 0.2910521888787154 2 W 1 -1 9.6041 0 0 0.9865 0 0 414.28559425788916 370.17658411197505 784.4621783698642 0 0 0 0 0 0.5 0 0 0 W 0.9865 - 7 + NaN NaN 93592.4 NaN 18475 4361 22829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22840 91.626 NaN 750390 35 0 136890 0.327 -1 VMPSSFFLL 9 66 528.7749143837757 1055.5352758343513 2 528.7750854492188 MULTI HCD FTMS 0 0 0 22839 140852.8125 0.07488127587490824 16 -0.4292449951171875 1 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 34.10243960390752 0.09241788333544565 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 33.94 0 0 3.2154 0 0 664.2884268813815 0 664.2884268813815 0 1.602649242617602 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.2154 + + 444 NaN NaN 212083.1 NaN 18476 4362 22839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22841 91.63 NaN 256070 35 0 79771 0.261 + 33129 YECLMMDFF 9 57 599.7352512980549 1197.4559496629097 2 599.7352905273438 MULTI HCD FTMS 0 0 0 22839 82603.515625 0.7699852247603858 -2 0.06226348876953125 2 Unmodified _YECLMMDFF_ REV__DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF 2.0597508629832335 0.3354026079994024 2 Y 1 -1 3.9794 0 0 0.33232 0 0 130.95516948888468 900.4094332330686 1031.3646027219534 0 0 0 0 0 0 0 0 0 Y 0.33232 + + 14 + NaN NaN 136271.4 NaN 18477 4362 22839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22842 91.634 NaN 228600 35 0 39181 0.263 + 10308 ILIDPLTW 8 58 485.78319642956325 969.5518399259265 2 485.7837219238281 MULTI HCD FTMS 0 0 0 22839 75591.4453125 0.6058614941866581 -2 0.06226348876953125 3 Unmodified _ILIDPLTW_ REV__ENSG00000154914|ENST00000285199|USP43;REV__nc|ENSG00000154914|Q70EL4-2|USP43;REV__nc|ENSG00000154914|Q70EL4-3|USP43;REV__nc|ENSG00000154914|Q70EL4-4|USP43 16.942295170755138 0.46913822049235215 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}T 6 -1 66.828 0 0 6.8926 0 0 0 334.17380701236567 334.17380701236567 45.85856558192965 0 0 0 0 2.079689690656103 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}T 6.8926 - 66 + NaN NaN 128902.6 NaN 18478 4362 22839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22844 91.639 NaN 3434100 35 0 774400 0.327 + 19942 NYFTGVFAF 9 118 533.255545289931 1064.4965376466619 2 533.2556762695312 MULTI HCD FTMS 0 0 0 22843 1032899 0.4596251263758953 -3 0.07511138916015625 1 Unmodified _NYFTGVFAF_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 92.65332237495696 0.004456439685314431 2 [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 9 0 + 84.802 0 0 7.9664 7.9664 93.725 0 0 0 15.686362358410122 63.64335993761068 15.686362358410122 12.958800173440764 0 2.5994850021680094 1.3010299956639813 0.8901668265424344 1.055462187404089 + + [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}V{[SA]|[TG]}{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}ASV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[{I|L}P]{[QS]|[NT]}NT{[MG]|[TS]}A{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}ASVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}[YQ]{I|L}A{M(Oxidation (M))|F};[DP]{I|L}{[CP]|[EA]}R{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 7.9664;6.749;5.706;5.0231;4.9374;4.8353;4.5713;4.5384;4.4037;4.3221 +;-;-;-;-;-;-;-;-;- + 3421 NaN NaN 610461.9 NaN 18479 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22845 91.643 NaN 2493800 35 0 876450 0.261 + 2103 DFDVAVVTF 9 79 506.7530303597173 1011.4915077862346 2 506.7531433105469 MULTI HCD FTMS 0 0 0 22843 1061151.375 0.8401989942407864 -1 0.012847900390625 2 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 172.90653553480564 2.2447970467336844E-09 2 {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F} 9 0 + 78.092 0 0 7.7205 7.7205 94.189 0 0 0 3.2568864632742844 50.64478327073884 3.2568864632742844 17.62045524367869 0 2.91944517631652 0 1.2856668758921828 0 + + {[{M(Oxidation (M))|F}D]|MM}DVAVVT{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}AVVT{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}{[RE]|[WV]}VVT{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{M(Oxidation (M))|F}{[VA]|[{I|L}G]}VDD{M(Oxidation (M))|F};{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ES]|[DT]|[{I|L}C]}[R{I|L}]T{M(Oxidation (M))|F};{I|L}{I|L}[YQ]VDD{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}D[K{I|L}]{I|L}D{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{[VA]|[{I|L}G]}VDD{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]V{[VA]|[{I|L}G]}VDD{M(Oxidation (M))|F} 7.7205;5.9785;5.929;3.566;2.9108;2.1697;2.111;2.048;1.4652;1.1171 +;-;-;-;-;-;-;-;-;- + 605 NaN NaN 459864.4 NaN 18480 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22846 91.647 NaN 1460600 35 0 336250 0.261 + 19949 NYGDIELLF 9 68 542.2716136450466 1082.5286743568931 2 542.2716064453125 MULTI HCD FTMS 0 0 0 22843 700195 0.7015360738972639 1 -0.03945159912109375 3 Unmodified _NYGDIELLF_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 131.26759243768294 0.0005280990274065272 2 [YN][DG]{I|L}E{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 103.13 0 0 9.5269 9.5269 98.982 0 0 0 30.457574905606748 78.39468846492052 30.457574905606748 77.22332374560656 0 2.4247425010840047 1.3979400086720375 1.035666875892183 1.8684151806525389 + + [YN][DG]{I|L}E{I|L}{I|L}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}[H{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 9.5269;2.3933 +;- + 288 NaN NaN 305019.2 NaN 18481 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22847 91.65 NaN 363290 35 0 21753 0.263 -1 0 81 422.5819131158917 1264.7239099478752 3 422.581787109375 MULTI HCD FTMS 0 0 0 22843 217711.09375 0.5123293937173279 15 -0.4163970947265625 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 0.94801 0 0 1099.645218396897 0 1099.645218396897 0 -2.7030375612038426 -2.7030375612038426 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.94801 - 20 + NaN NaN 152374.3 NaN 18482 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22848 91.654 NaN 470750 35 0 62520 0.261 + 20962 PLFVTWKI 8 86 502.3027890771464 1002.5910252210928 2 502.8144836425781 MULTI HCD FTMS 0 0 0 22843 10536.662109375 0.17354048030066271 -3 0.07511138916015625 5 Unmodified _PLFVTWKI_ ENSG00000101935|ENST00000262844|AMMECR1;ENST00000473662.1_1_X:109462834-109560930:-|nuORF;nc|ENSG00000101935|Q9Y4X0-4|AMMECR1 7.289230182591677 0.5311777711368266 2 {M(Oxidation (M))|F}[RK]{I|L} 4 5 5.0494 0 0 0.50364 0 0 440.26155287910314 0 440.26155287910314 0 1.0700062767654863 0 0 0 0 0 0 0.4247425010840047 {M(Oxidation (M))|F}[RK]{I|L} 0.50364 - 61 NaN NaN 163055.5 NaN 18483 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22849 91.657 NaN 481060 35 0 97561 0.261 + 27769 TAVAVFELL 9 59 481.7815862163225 961.5486194994451 2 481.7815246582031 MULTI HCD FTMS 0 0 0 22843 210280.5625 1 0 0 6 Unmodified _TAVAVFELL_ ENST00000527634.5_2_11:66512258-66526561:+|nuORF 65.23502041540118 0.010630085227462206 2 AV{M(Oxidation (M))|F}E{I|L}{I|L} 6 3 62.044 0 0 6.4525 0 0 271.1538258283219 0 271.1538258283219 0 50.3321441351563 0 0 0 2.2614393726401687 0 0.3054621874040891 0 + AV{M(Oxidation (M))|F}E{I|L}{I|L} 6.4525 + + 145 NaN NaN 160440.1 NaN 18484 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22850 91.66 NaN 575910 35 0 126420 0.261 + 27842 TDEFEDESF 9 74 559.7112985166584 1117.4080441001167 2 559.7113647460938 MULTI HCD FTMS 0 0 0 22843 101489.15625 0.30138583624759785 -3 0.07511138916015625 7 Unmodified _TDEFEDESF_ REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF 4.3292370932331545 0.3181982124262546 2 Q{I|L}{M(Oxidation (M))|F} 3 -1 28.188 0 0 2.5226 0 0 711.1866523538262 0 711.1866523538262 0 21.989700043360187 0 0 0 0.3494850021680094 0 0 0 Q{I|L}{M(Oxidation (M))|F} 2.5226 - 313 + NaN NaN 177359.8 NaN 18485 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22851 91.664 NaN 701380 35 0 58232 0.261 + 16682 LWSFCLAIF 9 84 578.7969381722382 1155.5793234112764 2 578.7991943359375 MULTI HCD FTMS 0 0 0 22843 152265.28125 0.7462123416525414 -1 0.012847900390625 8 Carbamidomethyl (C) _LWSFC(Carbamidomethyl (C))LAIF_ ENSG00000119915|ENST00000370005|ELOVL3 63.562846038646086 0.012597299157545023 2 M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NG]A{I|L}{M(Oxidation (M))|F} 10 5 + 49.698 0 0 4.3007 4.3007 82.255 0 0 0 27.825834421237516 5.2853716820872165 5.2853716820872165 2.04119982655925 0 1.3494850021680094 0 0 0.3807196863200844 M{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NG]A{I|L}{M(Oxidation (M))|F};M{I|L}{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}[NP]A{I|L}{M(Oxidation (M))|F};M{I|L}D[HV][NP]A{I|L}{M(Oxidation (M))|F};M{I|L}D{I|L}[RH][QP]{M(Oxidation (M))|F};[WR][Y{I|L}]{[MG]|[TS]}A{I|L}{M(Oxidation (M))|F};[YN]{I|L}P{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F};[YN]{I|L}P{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};M{I|L}{M(Oxidation (M))|F}{[CT]|[{M(Oxidation (M))|F}G]}{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]};M{I|L}D[HV]{[VA]|[{I|L}G]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 4.3007;4.124;3.8635;3.54;3.4302;2.6243;1.9544;1.7022;1.4554;1.4417 -;-;-;-;-;-;-;-;-;- 549 + NaN NaN 199149.5 NaN 18486 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22852 91.667 NaN 121350 35 0 7303.9 0.261 -1 KKVMEQLPLW 10 46 644.3604176827344 1286.7062824322686 2 644.360107421875 MULTI HCD FTMS 0 0 0 22843 93316.6328125 0.41714805599594434 16 -0.44593048095703125 9 Oxidation (M) _KKVM(Oxidation (M))EQLPLW_ ENST00000545737.5_1_12:28459732-28460593:+|nuORF 1.1933415558491238 0.46898715808974617 2 E 1 -1 6.0302 0 0 0.46865 0 0 677.4256560668374 477.2302645318969 1154.6559205987344 0 0 0 0 0 0 0 0.4247425010840047 0 E 0.46865 + + 17 + NaN NaN 108911.9 NaN 18487 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22853 91.67 NaN 476620 35 0 42571 0.261 -1 FLETTMVILT 10 92 592.3191393905107 1182.6237258478213 2 592.8217163085938 MULTI HCD FTMS 0 0 0 22843 118387.6171875 0.7486968371720378 -2 0.0456085205078125 10 Oxidation (M) _FLETTM(Oxidation (M))VILT_ ENST00000333891.13_1_7:82467561-82467600:-|nuORF 22.736283301280096 0.29844449404982915 2 YWV{I|L}[{I|L}T] 6 -1 33.435 0 0 2.8272 0 0 389.1847742870776 0 389.1847742870776 0 7.438579521273159 0 0 0 0.6549471895720984 0 0.75 0 YWV{I|L}[{I|L}T] 2.8272 - 821 + NaN NaN 158310.2 NaN 18488 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22854 91.673 NaN 301730 35 0 33973 0.261 -1 LYPICRAWM 9 67 605.3006490649238 1208.5867451966476 2 605.8206176757812 MULTI HCD FTMS 0 0 0 22843 38731.1484375 0.8925902803440485 1 -0.03945159912109375 11 Carbamidomethyl (C) _LYPIC(Carbamidomethyl (C))RAWM_ ENSG00000267796|ENST00000301159|LIN37;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF 12.531546534597751 0.2520865569484384 2 {I|L}{I|L}TD{I|L}NN{M(Oxidation (M))|F} 8 -1 51.008 0 0 4.2204 0 0 260.09078679996634 0 260.09078679996634 0 10.1168883594897 0 0 0 2.0986198691406326 0 0.3807196863200844 0.6139829889124311 {I|L}{I|L}TD{I|L}NN{M(Oxidation (M))|F} 4.2204 - 853 + NaN NaN 155670 NaN 18489 4363 22843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22856 91.678 NaN 384220 35 0 130730 0.327 -1 0 35 405.11861942977845 808.2226859263569 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22855 208857.296875 0.07643327162039554 42 -1.1591033935546875 1 NaN NaN 2 V 1 -1 0.9691 0 0 0.11991 0 0 422.04948143592566 284.0742281549438 706.1237095908695 0 0 0 0 0 0 0 0 0 V 0.11991 - 3 + NaN NaN 145602.3 NaN 18490 4364 22855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22857 91.683 NaN 587330 35 0 53837 0.261 + 6944 FPVNQLFDML 10 68 620.307614273246 1238.600675613292 2 620.3076782226562 MULTI HCD FTMS 0 0 0 22855 246892.171875 0.7748590345025633 -3 0.08506011962890625 2 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 125.52916310638031 2.8570307479996667E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 10 0 + 92.899 0 0 7.5003 7.5003 90.512 0 0 0 4.884381005764311 78.20615965204567 4.884381005764311 9.164539485499262 0 2.6989700043360187 0 0.4247425010840047 1.1307196863200843 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VN[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGGQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGG[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QN[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[Y{M(Oxidation (M))|F}][DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QYY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[YE]{[ET]|[MV]}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{M(Oxidation (M))|F}{I|L}{[QN]|[E{I|L}]|[KN]}{[ET]|[MV]}{I|L} 7.5003;6.7604;6.7604;5.1105;3.1009;2.8991;2.8773;2.7168;0.55939 +;-;-;-;-;-;-;-;- + 709 NaN NaN 173315 NaN 18491 4364 22855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22858 91.686 NaN 499120 35 0 37724 0.261 + 7490 FWDPSVNLF 9 84 562.7736255182089 1123.5326981032176 2 562.7747192382812 MULTI HCD FTMS 0 0 0 22855 181003.9375 1 0 0 3 Unmodified _FWDPSVNLF_ ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A 56.17704186161178 0.022929533404884107 2 {I|L}NV[HC]QV{M(Oxidation (M))|F} 8 8 37.076 0 0 3.3 0 0 165.08720395724623 0 165.08720395724623 0 22.60507834347049 0 0 0 0.75 0 0 0.5242275032520141 {I|L}NV[HC]QV{M(Oxidation (M))|F} 3.3 - 574 + NaN NaN 165196.6 NaN 18492 4364 22855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22860 91.691 NaN 8361700 35 0 1396700 0.327 + 15830 LPIFPDLQV 9 84 521.3025785296874 1040.5906041261746 2 521.3031005859375 MULTI HCD FTMS 0 0 0 22859 6077982.5 0.6576695987403178 3 -0.09185028076171875 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 149.9946105101851 8.83195450578534E-06 2 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV 9 0 + 85.406 0 0 8.2075 8.2075 90.73 0 0 0 16.26718641991411 38.82913167396961 16.26718641991411 7.257724967479874 0 2.0189301784845295 1.3010299956639813 0.7134679910804405 0 + + [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}N{I|L};[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQ{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}N{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}GG{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PDQ{I|L}V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQV{I|L} 8.2075;7.51;7.3408;7.3226;6.9433;6.6433;6.6251;6.4559;6.2458;6.0766 +;-;-;-;-;-;-;-;-;- + 2004 NaN NaN 656527.6 NaN 18493 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22861 91.696 NaN 3734500 35 0 1046000 0.261 + 949 AYEIIDQFF 9 76 573.2792684956456 1144.5439840580912 2 573.2794799804688 MULTI HCD FTMS 0 0 0 22859 2079227.5 0.7992573754802251 1 -0.039459228515625 2 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 114.20165948288297 0.0022564706844261533 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 109.7 0 0 9.5849 9.5849 95.632 0 0 0 18.65279269351241 76.21260043043469 18.65279269351241 13.015384402724592 0 3.3494850021680094 1.3010299956639813 1.079689690656103 0.3807196863200844 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]A{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YA{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}A{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]A{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YA{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}A{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[{I|L}A]YDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}T]VDQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9.5849;8.4477;7.5944;6.5868;6.5868;6.4572;5.7823;5.4497;4.771;4.596 +;-;-;-;-;-;-;-;-;- + 786 NaN NaN 657315.9 NaN 18494 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22862 91.699 NaN 887300 35 0 31521 0.261 -1 0 115 641.8826105638228 1281.7506681944456 2 641.8826904296875 MULTI HCD FTMS 0 0 0 22859 950511.6875 0.5760116155359118 16 -0.4460296630859375 3 NaN NaN 2 A[RV]N 4 -1 12.976 0 0 1.0124 0 0 823.4774647443375 0 823.4774647443375 0 3.37205316164642 0 0 0 0.4247425010840047 0 0 0.3807196863200844 A[RV]N 1.0124 - 338 NaN NaN 224007.5 NaN 18495 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22863 91.703 NaN 1427000 35 0 443590 0.264 + 35210 YVLKGGGM 8 82 412.7207316687958 823.4269104043916 2 412.7206115722656 MULTI HCD FTMS 0 0 0 22859 862361.375 0.7397599425510873 -3 0.0652008056640625 4 Unmodified _YVLKGGGM_ ENSG00000163840|ENST00000296161|DTX3L 14.581692164780916 0.48650662947107914 2 [YV]WP{I|L}{M(Oxidation (M))|F} 6 5 + 61.916 0 0 7.5193 7.5193 90.304 0 0 0 2.2577249674798594 2.2577249674798594 2.2577249674798594 9.06295947543775 0 1.7302046884880937 1.3979400086720375 0 0 [YV]WP{I|L}{M(Oxidation (M))|F};[YV]W{I|L}P{M(Oxidation (M))|F};[YV]{I|L}WP{M(Oxidation (M))|F};[{I|L}V]YWP{M(Oxidation (M))|F} 7.5193;6.4187;6.4187;4.4981 -;-;-;- 166 NaN NaN 303112.4 NaN 18496 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22864 91.706 NaN 647130 35 0 134080 0.261 + 888 AYAIITALL 9 52 474.7919756850864 947.5693984369728 2 474.7919006347656 MULTI HCD FTMS 0 0 0 22859 395196.71875 0.6754204909870907 1 -0.039459228515625 5 Unmodified _AYAIITALL_ ENSG00000181804|ENST00000316549|SLC9A9 109.62928328672726 0.0030029239606406397 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA{I|L}{I|L} 9 0 + 96.297 0 0 10.162 10.162 98.263 0 0 0 13.482587709797329 13.482587709797329 13.482587709797329 34.73197507588033 0 2.774227503252014 1.5228787452803376 0.7742275032520141 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}TA{I|L}{I|L};[{I|L}A]T{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L} 10.162;6.4971 +;- + 188 NaN NaN 182969 NaN 18497 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22865 91.709 NaN 502330 35 0 109700 0.261 + 5020 FDDATSPSVR 10 71 547.7585226372298 1093.5024923412595 2 547.7584228515625 MULTI HCD FTMS 0 0 0 22859 158847.4375 0.46763959449237674 3 -0.09185028076171875 6 Unmodified _FDDATSPSVR_ REV__ENST00000479896.1_1_10:129869671-129881167:+|nuORF 13.042465956692817 0.38911719078024076 2 QV 2 -1 17.474 0 0 1.598 0 0 848.3666249005875 0 848.3666249005875 0 4.61631198422463 0 0 0 0 0 0 0 QV 1.598 - 68 NaN NaN 168092 NaN 18498 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22866 91.713 NaN 684410 35 0 87380 0.261 + -1 IEVYCFLI 8 69 528.7749143837757 1055.5352758343513 2 528.784423828125 MULTI HCD FTMS 0 0 0 22859 135875.828125 0.07223537244284518 19 -0.5429534912109375 7 Carbamidomethyl (C) _IEVYC(Carbamidomethyl (C))FLI_ REV__ENSG00000173578|ENST00000309285|XCR1 24.67388899826682 0.4122521268485776 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 -1 32.747 0 0 3.1024 0 0 664.2880249577777 0 664.2880249577777 0 -7.627881306118454 -7.627881306118454 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 3.1024 + + 201 NaN NaN 191350.2 NaN 18499 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22867 91.716 NaN 254130 35 0 47531 0.261 + 15907 LPLQLAITL 9 46 491.3208494484538 980.6271459637077 2 491.32098388671875 MULTI HCD FTMS 0 0 0 22859 94678.09375 0.4766826326634936 1 -0.039459228515625 8 Unmodified _LPLQLAITL_ ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 36.12702656103203 0.08312389501731911 2 A{I|L}T{I|L} 4 5 50.433 0 0 5.1429 0 0 564.364159671022 0 564.364159671022 0 43.44335023848103 0 0 0 1.5 0 0.3494850021680094 0 + A{I|L}T{I|L} 5.1429 + + 31 NaN NaN 124829.9 NaN 18500 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22868 91.719 NaN 447850 35 0 95917 0.261 -1 MPPWENIWL 9 48 601.2907701088392 1200.5669872844783 2 601.288818359375 MULTI HCD FTMS 0 0 0 22859 187548.796875 0.9159554088508941 -4 0.09796142578125 9 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.13340543277302316 2 EN{I|L}W{I|L} 5 -1 54.706 0 0 4.5567 0 0 527.2189808576187 0 527.2189808576187 0 49.019862825870675 0 0 0 1.3494850021680094 0 0 0.3252574989159953 EN{I|L}W{I|L} 4.5567 + + 41 NaN NaN 157488.3 NaN 18501 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22869 91.722 NaN 218910 35 0 28630 0.262 -1 0 56 525.7261215066218 1049.4376900800435 2 525.7259521484375 MULTI HCD FTMS 0 0 0 22859 57758.91015625 0.6775235623517402 1 -0.039459228515625 10 NaN NaN 2 D{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9981 0 0 0 784.3195877420644 784.3195877420644 5.484550065040281 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 1.9981 - 74 + NaN NaN 126708.7 NaN 18502 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22870 91.726 NaN 150190 35 0 9673.3 0.261 + 14316 LDLKRWHG 8 65 512.789390217348 1023.564227501496 2 513.8052978515625 MULTI HCD FTMS 0 0 0 22859 6628.48388671875 0.2386119178428052 3 -0.09185028076171875 11 Unmodified _LDLKRWHG_ nc|ENSG00000289721|W6CW81|PYDC5 7.910154910731844 0.5302565402355366 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L} 3 5 10.502 0 0 1.026 0 0 0 679.347405562296 679.347405562296 5.017346757967546 0 0 0 0 0.3054621874040891 0 0 0 + {NN|[MP]|[D{I|L}]|[EV]}{I|L} 1.026 + + 20 NaN NaN 110114.1 NaN 18503 4365 22859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22872 91.731 NaN 1264300 35 0 166930 0.327 + 34110 YNNTINMFA 9 102 544.247030408401 1086.4795078836019 2 544.2470092773438 MULTI HCD FTMS 0 0 0 22871 535933.375 1 0 0 1 Unmodified _YNNTINMFA_ tr|U7T3S7|U7T3S7_FUSNUTryptophan--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trpSPE=3SV=1 26.88365393820708 0.12808753336095696 2 [YN]QVGTGMA{M(Oxidation (M))|F} 10 7 + 74.879 0 0 6.8919 6.8919 86.288 0 0 0 7.416192414640847 7.416192414640847 7.416192414640847 1.8752072083646425 0 2.2179001828205482 2 0 0.5866968715561641 [YN]QVGTGMA{M(Oxidation (M))|F};[YN]AGVGTGMA{M(Oxidation (M))|F};NY{M(Oxidation (M))|F}TGVQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NY{M(Oxidation (M))|F}TGVGA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NY{M(Oxidation (M))|F}TG{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]};NYQ[Y{I|L}]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NYQ[Y{I|L}]GA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NY{M(Oxidation (M))|F}AA[TA]A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}[YN]TGVQ{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};NY[AG][Y{I|L}]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.8919;6.7193;6.2093;6.0327;4.3619;3.9665;3.785;3.3389;3.1757;3.114 -;-;-;-;-;-;-;-;-;- 2785 NaN NaN 290023.9 NaN 18504 4366 22871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22873 91.735 NaN 565520 35 0 115680 0.261 + 6492 FPIPGEPGFPL 11 78 585.8134525913252 1169.6123522494504 2 585.8132934570312 MULTI HCD FTMS 0 0 0 22871 203336 0.39156387497521417 -9 0.2489471435546875 2 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 29.081581746732265 0.20726811077697932 2 M[PG][WP]EP{I|L} 8 6 36.56 0 0 3.1258 0 0 244.17923171211095 0 244.17923171211095 0 17.88750309660614 0 0 0 1.805462187404089 0 0 0 M[PG][WP]EP{I|L} 3.1258 - 1190 NaN NaN 175825.6 NaN 18505 4366 22871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22874 91.739 NaN 339290 35 0 42681 0.261 -1 0 69 511.3274656994474 1020.6403784656948 2 511.32733154296875 MULTI HCD FTMS 0 0 0 22871 337514.8125 1 0 0 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2834 0 0 855.5610918219433 0 855.5610918219433 0 5.140143618001218 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2834 - 68 + NaN NaN 142092 NaN 18506 4366 22871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22875 91.742 NaN 154450 35 0 9123.8 0.261 + 30981 VSAIHKLMRWI 11 71 451.93257571415285 1352.7758977426586 3 451.93267822265625 MULTI HCD FTMS 0 0 0 22871 73272.953125 0.5094378895020338 4 -0.11145782470703125 4 Unmodified _VSAIHKLMRWI_ ENSG00000164077|ENST00000296473|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A 1.214830529360525 0.41359283248740725 2 {M(Oxidation (M))|F} 1 10 6.9897 0 0 0.51669 0 0 523.3937237095665 679.2964571588499 1202.6901808684165 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.51669 + + 10 + NaN NaN 117680.7 NaN 18507 4366 22871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22877 91.747 NaN 1255900 35 0 48509 0.327 -1 0 101 633.3693349814924 1264.7241170297848 2 633.3695068359375 MULTI HCD FTMS 0 0 0 22876 1720308.5 0.5586187575705448 18 -0.5202407836914062 1 NaN NaN 2 {[HG]|PP}N{[HG]|PP}{[ES]|[DT]|[{I|L}C]}K 8 -1 13.121 0 0 1.0375 0 0 0 415.19672393592066 415.19672393592066 2.720384319171389 0 0 0 0 1.4802046884880937 0 0.7059771852360797 0 {[HG]|PP}N{[HG]|PP}{[ES]|[DT]|[{I|L}C]}K 1.0375 - 206 + NaN NaN 279443 NaN 18508 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22878 91.751 NaN 1003700 35 0 106630 0.263 -1 0 78 494.30092743872706 986.5873019442541 2 494.30108642578125 MULTI HCD FTMS 0 0 0 22876 952805.6875 0.8416662847993817 -1 0.016204833984375 2 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 4.0848 0 0 0.41403 0 0 396.23619074370055 427.3046053522094 823.54079609591 0 0 0 0 0 0.3807196863200844 0 0 0 C(Carbamidomethyl (C)) 0.41403 - 22 + NaN NaN 236337.7 NaN 18509 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22879 91.755 NaN 208170 35 0 41949 0.261 -1 0 43 480.2809794434429 958.5474059536858 2 480.2810363769531 MULTI HCD FTMS 0 0 0 22876 86268.65625 0.14328607022862475 1 -0.03618621826171875 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.7724 0 0 793.4683634505593 0 793.4683634505593 0 3.8021124171160636 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7724 - 14 + NaN NaN 132932.9 NaN 18510 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22880 91.758 NaN 1380400 35 0 163080 0.261 + 35735 YYLNFISAI 9 95 552.2923437361416 1102.570134539083 2 552.2924194335938 MULTI HCD FTMS 0 0 0 22876 342028.5 0.5013515759285545 3 -0.09525299072265625 4 Unmodified _YYLNFISAI_ ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 107.99703571036002 0.003269392969029945 2 A[R{M(Oxidation (M))|F}]{I|L}SA{I|L} 7 4 44.663 0 0 4.0508 0 0 326.1261158673844 0 326.1261158673844 0 18.538019150712287 0 0 0 1.4247425010840047 0 0.555462187404089 1.3001648626366045 A[R{M(Oxidation (M))|F}]{I|L}SA{I|L} 4.0508 - 561 NaN NaN 299396.6 NaN 18511 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22881 91.762 NaN 294540 35 0 28835 0.261 + 7200 FSLTLQNEIC 10 56 584.2894484754645 NaN 0 584.270751953125 PEAK HCD FTMS 0 0 0 22876 13651.865234375 1 0 0 5 Unmodified _FSLTLQNEIC_ REV__ENSG00000196267|ENST00000682614|ZNF836 9.38312468134398 0.33215363477037435 2 E{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 5 -1 14.08 0 0 1.207 0 0 234.1400646272786 312.0962008111938 546.2362654384724 0 0 0 0 0 0 0 0 0.4247425010840047 E{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 1.207 - 124 + NaN NaN 132077.7 NaN 18512 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22882 91.765 NaN 506850 35 0 30902 0.261 + 2092 DFDKYIAY 8 71 517.7446432969081 1033.474733660616 2 517.7447509765625 MULTI HCD FTMS 0 0 0 22876 110793.6796875 0.6486401079713683 5 -0.1444244384765625 6 Unmodified _DFDKYIAY_ ENSG00000186280|ENST00000335080|KDM4D 20.453626601364224 0.4433031943603284 2 {M(Oxidation (M))|F}VVAVV 6 7 35.239 0 0 3.4098 0 0 131.0175964988835 285.08509948168194 416.10269598056544 0 0 0 0 0 1.9119543704721593 0 0 0 {M(Oxidation (M))|F}VVAVV 3.4098 - 400 + NaN NaN 167146.2 NaN 18513 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22883 91.768 NaN 224710 35 0 50263 0.262 -1 YVLGGIGC 8 56 419.7103937005297 837.4062344678595 2 419.71038818359375 MULTI HCD FTMS 0 0 0 22876 111568.765625 0.6579475088732692 -1 0.016204833984375 7 Carbamidomethyl (C) _YVLGGIGC(Carbamidomethyl (C))_ ENSG00000187715|ENST00000405109|KBTBD12;nc|ENSG00000187715|Q3ZCT8-2|KBTBD12 11.114462752807354 0.5120171699125776 2 P{I|L}{M(Oxidation (M))|F} 3 -1 34.169 0 0 4.0803 0 0 462.1893754422608 0 462.1893754422608 0 20.61333596288584 0 0 0 1.274227503252014 0 0 0 P{I|L}{M(Oxidation (M))|F} 4.0803 - 35 NaN NaN 117622.8 NaN 18514 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22884 91.772 NaN 189430 35 0 31276 0.261 -1 0 56 439.1762272091302 876.3379014850605 2 439.17620849609375 MULTI HCD FTMS 0 0 0 22876 70387.5 0.6762424141710075 1 -0.03618621826171875 8 NaN NaN 2 H 1 -1 7.7866 0 0 0.88854 0 0 610.2256405981449 126.03482996158438 736.2604705597292 0 0 0 0 0 0.3807196863200844 0 0 0 H 0.88854 - 8 + NaN NaN 122166.6 NaN 18515 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22885 91.775 NaN 569110 35 0 79211 0.261 + 950 AYEIIDQFF 9 66 573.2792684956456 1144.5439840580912 2 574.7836303710938 MULTI HCD FTMS 0 0 0 22876 73163.015625 0.6167836442838948 3 -0.09525299072265625 9 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 22.736283301280096 0.1639198954644489 2 Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 5 7 24.961 0 0 2.1808 0 0 0 474.2041675080342 474.2041675080342 -3.258884703078735 0 -3.258884703078735 0 0 0.2742275032520141 0 0 0 Y{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 2.1808 - 430 + NaN NaN 177365.9 NaN 18516 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22886 91.778 NaN 72902 35 0 5039.5 0.263 + 3594 EKIRTKQIQR 10 46 433.9327176859468 NaN 0 433.93218994140625 PEAK HCD FTMS 0 0 0 22876 17549.3359375 0.3288969222581186 15 -0.4249114990234375 10 Unmodified _EKIRTKQIQR_ ENSG00000186001|ENST00000425562|LRCH3;ENST00000494069.1_1_3:197566242-197575018:+|nuORF;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3 3.3196427980023873 0.3373431348853355 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99885.8 NaN 18517 4367 22876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22888 91.783 NaN 2566300 35 0 728370 0.327 + 19943 NYFTGVFAF 9 98 533.255545289931 1064.4965376466619 2 533.255859375 MULTI HCD FTMS 0 0 0 22887 1398454.75 0.6222921517009128 2 -0.0590667724609375 1 Unmodified _NYFTGVFAF_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 149.9946105101851 8.83195450578534E-06 2 [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 9 0 + 91.71 0 0 8.6153 8.6153 91.024 0 0 0 4.649765985539588 4.649765985539588 4.649765985539588 6.6394660288997756 0 3.048455006504028 1.154901959985743 1.0044321917401078 1.1549471895720984 + + [YN]{M(Oxidation (M))|F}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]TSTGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]TSTGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[HV]TSTGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}HSTGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}TN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}HSTGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]TSTN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.6153;7.9916;7.4736;6.9563;6.7918;6.4383;6.0352;6.0194;5.8482;5.8247 +;-;-;-;-;-;-;-;-;- + 2924 NaN NaN 474281.7 NaN 18518 4368 22887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22889 91.788 NaN 721490 35 0 161510 0.261 + 6493 FPIPGEPGFPL 11 71 585.8134525913252 1169.6123522494504 2 585.8135375976562 MULTI HCD FTMS 0 0 0 22887 278342.8125 0.5360043978144523 -7 0.18981170654296875 2 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 41.8396318013385 0.12510225336016262 2 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L} 10 6 + 56.603 0 0 4.8394 4.8394 87.653 0 0 0 8.534087492996392 25.980137174129325 8.534087492996392 10.10090614668492 0 1.6861818737241734 1.3010299956639813 1.086696871556164 0 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L};[{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[WP][TA]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA]E[WP]P{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA]E[WP]P{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA][WP]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F}[PG]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA][WP]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[WP][TA]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WP][TA]EP{I|L} 4.8394;3.9758;3.7523;3.5765;3.3869;2.7129;2.6632;2.5232;2.4894;2.2997 -;-;-;-;-;-;-;-;-;- 1087 NaN NaN 218428.2 NaN 18519 4368 22887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22890 91.791 NaN 203990 35 0 20621 0.261 -1 FLETTMVILT 10 71 592.3191393905107 1182.6237258478213 2 592.3179321289062 MULTI HCD FTMS 0 0 0 22887 152115.5625 0.767324392325082 -2 0.05239105224609375 3 Oxidation (M) _FLETTM(Oxidation (M))VILT_ ENST00000333891.13_1_7:82467561-82467600:-|nuORF 10.073929032068715 0.4168838835836452 2 WV{I|L}[{I|L}T] 5 -1 22.364 0 0 1.891 0 0 552.2493494823901 0 552.2493494823901 0 5.056584229283839 0 0 0 0 0 0.6421590589602533 0 WV{I|L}[{I|L}T] 1.891 - 256 + NaN NaN 116053.5 NaN 18520 4368 22887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22891 91.794 NaN 242400 35 0 24662 0.261 + 17568 LYVLYFDF 8 66 540.2767131604012 1078.5388733876023 2 539.77587890625 MULTI HCD FTMS 0 0 0 22887 49899.33984375 0.5093549109195281 16 -0.45110321044921875 4 Unmodified _LYVLYFDF_ ENSG00000109181|ENST00000265403|UGT2B10;UGT2B10|p.W222S|1|0.22|ENSG00000109181|chr4:68816684-68816684|G/C|missense_variant 11.114462752807354 0.5120171699125776 2 {M(Oxidation (M))|F}D{I|L}[KS]K{NN|[MP]|[D{I|L}]|[EV]} 8 7 19.117 0 0 1.7725 0 0 114.09535074810101 0 114.09535074810101 0 1.7047806571365278 0 0 0 0 0 0.4247425010840047 0 {M(Oxidation (M))|F}D{I|L}[KS]K{NN|[MP]|[D{I|L}]|[EV]} 1.7725 - 400 + NaN NaN 126981 NaN 18521 4368 22887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22892 91.798 NaN 148150 35 0 14254 0.261 + 2404 DPLLLLTW 8 53 485.78319642956325 969.5518399259265 2 485.7829895019531 MULTI HCD FTMS 0 0 0 22887 33766.46875 0.27063648704834514 4 -0.10823822021484375 5 Unmodified _DPLLLLTW_ nc|ENSG00000174527|Q8N1T3|MYO1H 15.847184025352803 0.47719562709667024 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}T 6 4 51.036 0 0 5.2639 0 0 0 334.1736239068969 334.1736239068969 33.077053078093215 0 0 0 0 1.579689690656103 2 0 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A{I|L}{I|L}T 5.2639 - 64 + NaN NaN 112200.8 NaN 18522 4368 22887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22893 91.801 NaN 80654 35 0 12604 0.261 + 27989 TFITVSALF 9 44 499.7815691446348 997.5485853560696 2 499.78179931640625 MULTI HCD FTMS 0 0 0 22887 47696.8671875 1 0 0 6 Unmodified _TFITVSALF_ ENSG00000070476|ENST00000389709|ZXDC;ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB;nc|ENSG00000070476|Q2QGD7-2|ZXDC;nc|ENSG00000070476|Q2QGD7-3|ZXDC 34.10243960390752 0.09241788333544565 2 S[{I|L}A]{M(Oxidation (M))|F} 4 5 34.693 0 0 3.4778 0 0 561.3146704255163 0 561.3146704255163 0 34.69273760456403 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + S[{I|L}A]{M(Oxidation (M))|F} 3.4778 + + 16 NaN NaN 116030 NaN 18523 4368 22887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22895 91.806 NaN 909260 35 0 83026 0.327 + 11823 KELSRSRK 8 110 502.3027890771464 1002.5910252210928 2 502.8143005371094 MULTI HCD FTMS 0 0 0 22894 20753.6484375 0.3418158502615667 2 -0.0558013916015625 1 Unmodified _KELSRSRK_ tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1 12.531546534597751 0.5015908124873912 2 A 1 8 5.4846 0 0 0.54704 0 0 104.0562529561491 824.4867432690742 928.5429962252233 0 0 0 0 0 0 0 0 0 A 0.54704 - 92 + NaN NaN 228240.7 NaN 18524 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22896 91.81 NaN 966650 35 0 270820 0.261 + 2104 DFDVAVVTF 9 58 506.7530303597173 1011.4915077862346 2 506.7529602050781 MULTI HCD FTMS 0 0 0 22894 342330.78125 0.27105084616595126 5 -0.13787841796875 2 Unmodified _DFDVAVVTF_ ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant 56.17704186161178 0.022929533404884107 2 AVVT{M(Oxidation (M))|F} 5 4 53.418 0 0 5.2811 0 0 476.19000739736583 0 476.19000739736583 0 31.99092531119419 0 0 0 2.1237125054200234 0 0.3252574989159953 0 + AVVT{M(Oxidation (M))|F} 5.2811 + + 280 + NaN NaN 245952.5 NaN 18525 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22897 91.814 NaN 1525700 35 0 106160 0.261 + 35736 YYLNFISAI 9 117 552.2923437361416 1102.570134539083 2 552.784423828125 MULTI HCD FTMS 0 0 0 22894 78770.2734375 0.21931979376368058 5 -0.13787841796875 3 Unmodified _YYLNFISAI_ ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant 85.27202061508552 0.004649858145912257 2 YYAS{M(Oxidation (M))|F}{I|L}EV 8 5 50.003 0 0 4.5351 0 0 0 127.08657289787108 127.08657289787108 9.74668792343109 0 0 0 0 0 1.3010299956639813 1.2658715643802767 0 YYAS{M(Oxidation (M))|F}{I|L}EV 4.5351 - 1072 NaN NaN 325395.8 NaN 18526 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22898 91.817 NaN 786950 35 0 186310 0.261 + 6494 FPIPGEPGFPL 11 69 585.8134525913252 1169.6123522494504 2 585.8133544921875 MULTI HCD FTMS 0 0 0 22894 321600.125 0.6193049491359781 -6 0.1670379638671875 4 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 36.12702656103203 0.16189322891242686 2 [{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L} 10 6 + 44.499 0 0 3.8046 3.8046 60.733 0 0 0 4.126969767161356 17.511037044048763 4.126969767161356 0 0 1 1.3010299956639813 0.2614393726401688 0 [{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[WP][TA]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[WP][TA]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[TA][WP]EP{I|L};[{I|L}P]YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[TA][WP]EP{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[WP][TA]EP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{I|L}{I|L};[{I|L}P]YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VQ{I|L};[{I|L}P]{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E][YK]N{I|L} 3.8046;3.8046;2.4348;2.4348;2.3354;2.328;2.328;2.054;1.886;1.6576 -;-;-;-;-;-;-;-;-;- 1177 NaN NaN 213737 NaN 18527 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22899 91.821 NaN 320850 35 0 15572 0.264 -1 0 78 422.5819131158917 1264.7239099478752 3 422.5819091796875 MULTI HCD FTMS 0 0 0 22894 192346.671875 0.45264047912241295 21 -0.6016693115234375 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 0.9661 0 0 1099.6451878793189 0 1099.6451878793189 0 -3.7248627423174696 -3.7248627423174696 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.9661 - 32 + NaN NaN 137675.5 NaN 18528 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22900 91.824 NaN 517320 35 0 98342 0.261 + 27843 TDEFEDESF 9 69 559.7112985166584 1117.4080441001167 2 559.7113647460938 MULTI HCD FTMS 0 0 0 22894 132366.265625 0.3930796070280887 3 -0.0854034423828125 6 Unmodified _TDEFEDESF_ REV__ENST00000412750.2_1_12:121545070-121545268:+|nuORF 7.910154910731844 0.2910521888787154 2 S{M(Oxidation (M))|F}[YR]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 7 -1 44.752 0 0 4.005 0 0 164.95914227685904 0 164.95914227685904 0 30.05961788448665 0 0 0 0.3494850021680094 0 0.7134679910804405 0.23965182871044374 S{M(Oxidation (M))|F}[YR]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 4.005 - 356 + NaN NaN 162565.9 NaN 18529 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22901 91.827 NaN 714690 35 0 99314 0.261 + 20253 NYLPFIMEL 9 88 578.2912552508974 1154.5679575685947 2 578.7985229492188 MULTI HCD FTMS 0 0 0 22894 65538.3125 0.057149358208564774 -10 0.26837921142578125 7 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 69.10491478415734 0.009377850133389008 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 54.143 0 0 4.6895 4.6895 88.588 0 0 0 14.818941346984928 12.05136871872881 12.05136871872881 14.818941346984928 0 1.7672203223519531 1.0457574905606752 0 0.6382104921644451 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}V][SG]P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[{I|L}V][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP];[{I|L}A][RN][DN]{I|L}D[QP] 4.6895;3.406;1.9344;0.67121;0.41048;0.19851 +;-;-;-;-;- + 813 NaN NaN 206436.5 NaN 18530 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22902 91.831 NaN 195560 35 0 11449 0.261 + -1 PSLCKPLVQFV 11 66 644.3604176827344 1286.7062824322686 2 644.3609008789062 MULTI HCD FTMS 0 0 0 22894 93035.328125 0.4158905555911778 22 -0.6212005615234375 8 Carbamidomethyl (C) _PSLC(Carbamidomethyl (C))KPLVQFV_ REV__ENSG00000164053|ENST00000320211|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-2|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-3|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP 2.735195868890462 0.4069250265843076 2 P 1 -1 5.4846 0 0 0.42625 0 0 687.3796965941812 499.2469881647094 1186.6266847588906 0 0 0 0 0 0 0 0 0 P 0.42625 + + 26 + NaN NaN 133842.4 NaN 18531 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22903 91.834 NaN 324630 35 0 104240 0.264 + 10041 IFDLSEVL 8 42 468.2578105547329 934.5010681762658 2 468.25787353515625 MULTI HCD FTMS 0 0 0 22894 97236.328125 0.22000527181860136 -6 0.1670379638671875 9 Unmodified _IFDLSEVL_ ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant 74.42276476219924 0.02458962149020947 2 ES{I|L}DE{I|L} 6 5 62.472 0 0 6.6851 0 0 230.1628132550797 0 230.1628132550797 0 57.86806291892539 0 0 0 1.8807196863200843 0 1.1549471895720984 0 ES{I|L}DE{I|L} 6.6851 - 97 NaN NaN 148649.9 NaN 18532 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22904 91.837 NaN 110660 35 0 8399.3 0.261 -1 0 66 437.25743752493037 1308.7504831749911 3 437.2575378417969 MULTI HCD FTMS 0 0 0 22894 70864.90625 0.3801212840073038 32 -0.8935928344726562 10 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 0.95314 0 0 1143.6717458476458 0 1143.6717458476458 0 5 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.95314 - 8 + NaN NaN 104779.7 NaN 18533 4369 22894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22906 91.842 NaN 1371900 35 0 219930 0.327 + 15831 LPIFPDLQV 9 72 521.3025785296874 1040.5906041261746 2 521.3026733398438 MULTI HCD FTMS 0 0 0 22905 870485.375 0.09419108516445467 8 -0.21312713623046875 1 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 120.45040980043947 0.0012363446172167195 2 [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV 9 0 + 70.728 0 0 6.7969 6.7969 86.369 0 0 0 14.180307788363109 38.89493610627589 14.180307788363109 2.4865124202832334 0 1.6549471895720984 1.154901959985743 0.4247425010840047 0 + + [{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}QV;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}QV;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}[AG]V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}N{I|L};[{I|L}P]{I|L}{M(Oxidation (M))|F}PDQ{I|L}V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}[AG]V;[{I|L}P]{M(Oxidation (M))|F}{I|L}PD{I|L}N{I|L};[{I|L}P]{M(Oxidation (M))|F}{I|L}PDQ{I|L}V;[{I|L}P]{I|L}{M(Oxidation (M))|F}PD{I|L}GG{I|L};[{I|L}P]{I|L}{M(Oxidation (M))|F}PD[AG]{I|L}V 6.7969;6.5579;5.912;5.717;5.717;5.673;5.478;5.478;4.8321;4.8321 +;-;-;-;-;-;-;-;-;- + 2064 NaN NaN 300184.6 NaN 18534 4370 22905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22907 91.847 NaN 1048700 35 0 308570 0.261 + 951 AYEIIDQFF 9 72 573.2792684956456 1144.5439840580912 2 573.2793579101562 MULTI HCD FTMS 0 0 0 22905 416700.96875 0.16018031823991954 6 -0.154083251953125 2 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 70.33199760932243 0.0089807860198535 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 90.856 0 0 7.9382 7.9382 91.971 0 0 0 18.913187455970544 70.56601603404445 18.913187455970544 9.208187539523749 0 2.9247425010840047 1.3979400086720375 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}E{I|L}{I|L}D[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.9382;7.1337 +;- + 463 NaN NaN 254358 NaN 18535 4370 22905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22908 91.85 NaN 532490 35 0 45883 0.261 + 6945 FPVNQLFDML 10 72 620.307614273246 1238.600675613292 2 620.3079223632812 MULTI HCD FTMS 0 0 0 22905 225886.046875 0.708932336168924 3 -0.07540130615234375 3 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 125.52916310638031 2.8570307479996667E-05 2 NQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 7 3 81.847 0 0 6.608 0 0 343.189256736525 0 343.189256736525 0 64.13843640663003 0 0 0 2.6989700043360187 0 0.4247425010840047 1.309894379144197 + NQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 6.608 + + 436 NaN NaN 187821.2 NaN 18536 4370 22905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22909 91.854 NaN 917330 35 0 87446 0.261 + 6065 FPEALIPVQL 10 100 563.8289531412987 1125.6433533493973 2 563.8294067382812 MULTI HCD FTMS 0 0 0 22905 124847.9765625 0.6428695906346646 -5 0.15091705322265625 4 Unmodified _FPEALIPVQL_ ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 32.78568957990786 0.20801173326193015 2 C(Carbamidomethyl (C))ASW[VP]Q{I|L} 8 5 29.831 0 0 2.6501 0 0 166.19061785164314 0 166.19061785164314 0 6.274269105803327 0 0 0 1.3494850021680094 0 0.2614393726401688 0.6861818737241735 C(Carbamidomethyl (C))ASW[VP]Q{I|L} 2.6501 - 1357 + NaN NaN 236651.7 NaN 18537 4370 22905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22910 91.857 NaN 663110 35 0 85117 0.261 + 20254 NYLPFIMEL 9 86 578.2912552508974 1154.5679575685947 2 578.291015625 MULTI HCD FTMS 0 0 0 22905 87268.7265625 0.05216334775736397 -9 0.24887847900390625 5 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 85.64151623876279 0.004640175941193596 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 72.92 0 0 6.3158 6.3158 92.276 0 0 0 11.481727456289242 11.481727456289242 11.481727456289242 23.929002405256178 0 2.2658715643802765 1.2218487496163564 0 0.5189301784845296 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}YYP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP];{NN|[MP]|[D{I|L}]|[EV]}{I|L}YYP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{NN|[MP]|[D{I|L}]|[EV]}{I|L}YYA[VG]E{I|L};{[QN]|[E{I|L}]|[KN]}VYYP{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{[QN]|[E{I|L}]|[KN]}V{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP];{[QN]|[E{I|L}]|[KN]}[RN][NG]{I|L}D[QP];{[QN]|[E{I|L}]|[KN]}VYYP{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 6.3158;4.2432;1.7162;1.606;1.486;1.186;1.1108;1.0007;0.94539;0.88059 +;-;-;-;-;-;-;-;-;- + 883 NaN NaN 202859.3 NaN 18538 4370 22905 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22912 91.862 NaN 765760 35 0 28002 0.327 -1 0 115 641.8826105638228 1281.7506681944456 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22911 710350.4375 0.4304735107226304 22 -0.617919921875 1 NaN NaN 2 D[RV]A 4 -1 14.792 0 0 1.1541 0 0 105.08001778341266 732.4012545221311 837.4812723055438 0 0 0 0 0 0.9698565171985375 0 0.3807196863200844 0.5 D[RV]A 1.1541 - 659 + NaN NaN 213206.3 NaN 18539 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22913 91.866 NaN 1256300 35 0 325950 0.264 + 35211 YVLKGGGM 8 83 412.7207316687958 823.4269104043916 2 412.720703125 MULTI HCD FTMS 0 0 0 22911 663512.625 0.5691814076806503 3 -0.0820770263671875 2 Unmodified _YVLKGGGM_ ENSG00000163840|ENST00000296161|DTX3L 14.581692164780916 0.48650662947107914 2 [YV]WP{I|L}{M(Oxidation (M))|F} 6 5 + 59.732 0 0 7.2541 7.2541 89.25 0 0 0 5.95459138175157 5.95459138175157 5.95459138175157 7.631492287727454 0 1.5629529932484498 1.5228787452803376 0 0 [YV]WP{I|L}{M(Oxidation (M))|F};[YV]W{I|L}P{M(Oxidation (M))|F};[YV]{I|L}WP{M(Oxidation (M))|F};[{I|L}P]W[YV]{M(Oxidation (M))|F} 7.2541;6.3273;6.3273;1.1759 -;-;-;- 143 NaN NaN 281458.2 NaN 18540 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22914 91.87 NaN 981300 35 0 201550 0.261 + 28941 TWYPVSIPAF 10 68 590.8054365670644 1179.5963202009286 2 590.805419921875 MULTI HCD FTMS 0 0 0 22911 388410.3125 0.25708971938151176 -4 0.1148223876953125 3 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 69.10491478415734 0.018645933849003846 2 {[WT]|[RM]}Y[VP]S{I|L}PA{M(Oxidation (M))|F} 10 0 + 75.495 0 0 6.4 6.4 87.119 0 0 0 5.764837301042718 45.784634594678266 5.764837301042718 6.25006122945959 0 2.805462187404089 0 0.805462187404089 0 + + {[WT]|[RM]}Y[VP]S{I|L}PA{M(Oxidation (M))|F};[PA]{M(Oxidation (M))|F}V[MT]S{I|L}PA{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S{I|L}[DV]T;[HV]P{I|L}{[CP]|[EA]}S{I|L}PA{M(Oxidation (M))|F};[HV]P{I|L}S{[CP]|[EA]}{I|L}PA{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S{I|L}E[VS];[HV][DV][VP]S{I|L}PA{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP][TP]VA{M(Oxidation (M))|F};[HV]V[TP]{[CP]|[EA]}{I|L}PA{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S{[QD]|[EN]|[WG]|[KD]|[RS]}[KG] 6.4;5.8702;4.4925;4.4753;4.4753;4.3866;3.4108;2.9425;2.7133;2.5235 +;-;-;-;-;-;-;-;-;- + 462 NaN NaN 257837 NaN 18541 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22915 91.873 NaN 422420 35 0 79752 0.261 -1 MPPWENIWL 9 60 601.2907701088392 1200.5669872844783 2 601.2894287109375 MULTI HCD FTMS 0 0 0 22911 136582.65625 0.6670457226701945 2 -0.0558319091796875 4 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 22.736283301280096 0.1639198954644489 2 E{[QV]|[N{I|L}]|[RA]|[KV]}W{I|L} 5 -1 37.575 0 0 3.1298 0 0 527.2197132794937 0 527.2197132794937 0 27.11758134947864 0 0 0 1.2302046884880937 0 0.3054621874040891 0 E{[QV]|[N{I|L}]|[RA]|[KV]}W{I|L} 3.1298 + + 62 NaN NaN 155670.9 NaN 18542 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22916 91.876 NaN 465600 35 0 68316 0.261 + -1 MKQEGNFAF 9 73 544.247030408401 1086.4795078836019 2 544.2468872070312 MULTI HCD FTMS 0 0 0 22911 92774.9765625 0.1731091603737125 5 -0.13451385498046875 5 Oxidation (M) _M(Oxidation (M))KQEGNFAF_ REV__ENST00000318948.6_1_21:16340786-16386756:-|nuORF;REV__ENST00000400199.5_1_21:16340786-16415865:-|nuORF;REV__ENST00000411932.1_3_21:16340786-16374577:-|nuORF 19.256988751693697 0.19398022840297344 2 [YN]Q[VG]T{[MG]|[TS]}A{M(Oxidation (M))|F} 10 -1 + 58.619 0 0 5.3954 5.3954 89.741 0 0 0 10.431825014007217 29.336068845642203 10.431825014007217 15.269250191953674 0 1.774227503252014 2 0 0.3252574989159953 [YN]Q[VG]T{[MG]|[TS]}A{M(Oxidation (M))|F};[YN]Q[VG]T{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN][AG][VG]T{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]Q[Y{I|L}]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}[YN]T[VG]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]{M(Oxidation (M))|F}TT[NP][KC];[YN][AG][Y{I|L}]Q{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[YN]Q[Y{I|L}][AG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{M(Oxidation (M))|F}[YN]TT[NP][KC];[YT][{I|L}P][YG]D{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.3954;3.99;3.1424;2.7527;2.2917;2.1823;1.9003;1.9003;1.4738;1.2052 -;-;-;-;-;-;-;-;-;- 542 NaN NaN 164468.7 NaN 18543 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22917 91.88 NaN 607330 35 0 77816 0.261 -1 VMPSSFFLL 9 61 528.7749143837757 1055.5352758343513 2 528.7752685546875 MULTI HCD FTMS 0 0 0 22911 81000.296875 0.043062012526347976 25 -0.7032012939453125 6 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 21.74664581756881 0.17247014374749275 2 S{I|L}EY{M(Oxidation (M))|F}{I|L} 6 -1 40.285 0 0 3.8165 0 0 285.1679859845719 0 285.1679859845719 0 10.186143099099851 0 0 0 0.3807196863200844 0 1.086696871556164 0 S{I|L}EY{M(Oxidation (M))|F}{I|L} 3.8165 - 370 NaN NaN 173866.5 NaN 18544 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22918 91.883 NaN 165580 35 0 39525 0.261 + 6889 FPVEDVFTLP 10 39 582.3028544340267 1162.5911559348533 2 582.3026733398438 MULTI HCD FTMS 0 0 0 22911 75731.609375 0.5244659817232026 -4 0.1148223876953125 7 Unmodified _FPVEDVFTLP_ ENSG00000081692|ENST00000620518|JMJD4;ENST00000480590.1_1_1:227921003-227922761:-|nuORF;ENST00000485807.1_1_1:227921606-227921849:-|nuORF;nc|ENSG00000081692|Q9H9V9-1|JMJD4;nc|ENSG00000081692|Q9H9V9-2|JMJD4 24.020572477871973 0.2864316864133941 2 {M(Oxidation (M))|F}T{I|L}P 4 6 49.24 0 0 4.2354 0 0 686.324022361525 0 686.324022361525 0 42.250547101681875 0 0 0 0.8807196863200843 0 0.8494850021680094 0 + {M(Oxidation (M))|F}T{I|L}P 4.2354 + + 17 NaN NaN 116086.7 NaN 18545 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22919 91.886 NaN 92866 35 0 10926 0.263 -1 0 46 439.2303712394729 438.2230947728729 1 439.23004150390625 MULTI HCD FTMS 0 0 0 22911 44789.95703125 0.7507001746622997 1 -0.02960205078125 8 NaN NaN 2 Q 1 -1 3.0989 0 0 0.70716 0 0 102.08818984298854 205.04842554263908 307.13661538562764 0 0 0 0 0 0 0 0 0 Q 0.70716 - 6 + NaN NaN 124955.6 NaN 18546 4371 22911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22921 91.891 NaN 1146900 35 0 40815 0.327 -1 0 110 633.3693349814924 1264.7241170297848 2 633.3695068359375 MULTI HCD FTMS 0 0 0 22920 1452461.875 0.4716435732492655 23 -0.6440658569335938 1 NaN NaN 2 N 1 -1 8.8958 0 0 0.70338 0 0 238.14187530932287 909.4913584042457 1147.6332337135686 0 0 0 0 0 0.7302046884880937 0 0 0 N 0.70338 - 276 + NaN NaN 280726.2 NaN 18547 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22922 91.896 NaN 762000 35 0 63924 0.263 -1 0 80 494.30092743872706 986.5873019442541 2 494.30108642578125 MULTI HCD FTMS 0 0 0 22920 631632.5625 0.5579561910808685 4 -0.10491180419921875 2 NaN NaN 2 D 1 -1 8.2488 0 0 0.83609 0 0 396.23697670706514 472.30622278385005 868.5431994909152 0 0 0 0 0 0.3494850021680094 0 0.3494850021680094 0 D 0.83609 - 17 + NaN NaN 210193.1 NaN 18548 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22923 91.899 NaN 308150 35 0 92078 0.262 -1 0 43 405.11861942977845 808.2226859263569 2 405.1189270019531 MULTI HCD FTMS 0 0 0 22920 141143.5625 0.051652800316042455 50 -1.31951904296875 3 NaN NaN 2 {I|L}T 2 -1 6.4537 0 0 0.7985 0 0 207.8608217679569 383.2060640924438 591.0668858604007 0 0 0 0 0 0 0 0 0 {I|L}T 0.7985 - 9 + NaN NaN 139345.3 NaN 18549 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22924 91.903 NaN 677800 35 0 84365 0.261 -1 LLVCFYEI 8 67 528.7749143837757 1055.5352758343513 2 528.7845458984375 MULTI HCD FTMS 0 0 0 22920 85164.734375 0.045275943421773386 26 -0.729400634765625 4 Carbamidomethyl (C) _LLVC(Carbamidomethyl (C))FYEI_ ENSG00000137414|ENST00000259963|FAM8A1 18.13498045792455 0.4603629008820478 2 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 + 46.859 0 0 4.4393 4.4393 88.359 0 0 0 0.12034632436566994 12.333333518428802 0.12034632436566994 15.228787452803374 0 0.75 1.2218487496163564 0.3494850021680094 0 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}KP{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};[TA]VVP{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};[VP]{[SA]|[TG]}{I|L}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{I|L};[VP]{[SA]|[TG]}{M(Oxidation (M))|F}{I|L}Y{M(Oxidation (M))|F}{I|L};[VP]{[SA]|[TG]}{M(Oxidation (M))|F}[Y{M(Oxidation (M))|F}]{I|L}{I|L} 4.4393;2.9966;2.6365;1.7819;1.5922;1.2152;1.0545 -;-;-;-;-;-;- 355 NaN NaN 203493.1 NaN 18550 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22925 91.906 NaN 98776 35 0 6116.7 0.261 -1 0 59 451.93253336616567 1352.775770698697 3 451.9324645996094 MULTI HCD FTMS 0 0 0 22920 53403.16796875 0.18982933424598858 -20 0.553070068359375 5 NaN NaN 2 DE 2 -1 7.9588 0 0 0.58833 0 0 579.4401516574845 526.2309054010374 1105.671057058522 0 0 0 0 0 0 0 0 0 DE 0.58833 - 26 + NaN NaN 103067.4 NaN 18551 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22926 91.909 NaN 254340 35 0 29924 0.261 -1 0 66 511.3274656994474 1020.6403784656948 2 511.32757568359375 MULTI HCD FTMS 0 0 0 22920 64040.9453125 0.1897426214812424 6 -0.1639556884765625 6 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.3222 0 0 855.5611375983104 0 855.5611375983104 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3222 - 46 + NaN NaN 143161.3 NaN 18552 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22927 91.913 NaN 77782 35 0 9232.2 0.261 + 31268 VVYGLTAIL 9 41 474.7919756850864 947.5693984369728 2 474.7918701171875 MULTI HCD FTMS 0 0 0 22920 52696.85546875 0.09006283277542744 8 -0.209808349609375 7 Unmodified _VVYGLTAIL_ ENSG00000167332|ENST00000396950|OR51E2 15.847184025352803 0.2234401846867398 2 {I|L}T[{I|L}A]{I|L} 5 4 28.456 0 0 3.003 0 0 418.22142226386876 0 418.22142226386876 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 + {I|L}T[{I|L}A]{I|L} 3.003 + + 13 NaN NaN 115760.4 NaN 18553 4372 22920 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22929 91.918 NaN 1016300 35 0 260020 0.327 + 19944 NYFTGVFAF 9 81 533.255545289931 1064.4965376466619 2 533.2557373046875 MULTI HCD FTMS 0 0 0 22928 285589.96875 0.12708340842464436 7 -0.1835784912109375 1 Unmodified _NYFTGVFAF_ ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1 120.45040980043947 0.0012363446172167195 2 NP{[NV]|[RG]}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 10 3 + 64.835 0 0 6.0907 6.0907 84.964 0 0 0 41.303177683148306 2.6052901002643694 2.6052901002643694 1.9897000433601875 0 1.9247425010840047 0 0.28872548999643577 0.3807196863200844 NP{[NV]|[RG]}TGV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};NP{[NV]|[RG]}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};NP{I|L}[NS]GV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};NP{I|L}[NS]GVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TGVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};N[KA][DP]GV{M(Oxidation (M))|F}A{M(Oxidation (M))|F};NP{[NV]|[RG]}TN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};N[KA][DP]GVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};NP{[NV]|[RG]}TGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[HV]{[MG]|[TS]}TN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.0907;5.9038;5.5263;5.3393;5.2545;5.2268;5.1661;5.0399;4.9859;4.8038 -;-;-;-;-;-;-;-;-;- 1311 + NaN NaN 250134.4 NaN 18554 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22930 91.922 NaN 322760 35 0 77923 0.261 -1 0 57 480.2809794434429 958.5474059536858 2 480.2809753417969 MULTI HCD FTMS 0 0 0 22928 85534.0390625 0.14206592360185633 7 -0.1835784912109375 2 NaN NaN 2 {I|L}T{I|L}{I|L}{I|L} 5 -1 20.891 0 0 2.1794 0 0 0 402.13837610416255 402.13837610416255 10.406075122407685 0 0 0 0 0 0 0 0 {I|L}T{I|L}{I|L}{I|L} 2.1794 - 55 + NaN NaN 153427.1 NaN 18555 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22931 91.926 NaN 377370 35 0 67932 0.261 + 28889 TWCLIMLPFA 10 66 597.8081600528869 NaN 0 597.7950439453125 PEAK HCD FTMS 0 0 0 22928 8564.798828125 0.8996116952595558 1 -0.0262451171875 3 Unmodified _TWCLIMLPFA_ ENST00000493668.1_1_X:9866192-9900301:+|nuORF 7.289230182591677 0.3339457182549222 2 {I|L}ST 3 9 13.544 0 0 1.1347 0 0 333.19556742301717 556.2295015924436 889.4250690154608 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}ST 1.1347 - 104 + NaN NaN 155827.1 NaN 18556 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22932 91.929 NaN 149280 35 0 47153 0.261 + 3600 EKKQRGKGCVL 11 42 623.3584516353056 1244.7023503374112 2 623.3582153320312 MULTI HCD FTMS 0 0 0 22928 37785.1875 0.6289392301381864 1 -0.0262451171875 4 Unmodified _EKKQRGKGCVL_ ENSG00000188559|ENST00000202677|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 4.897010918128616 0.3974440401582579 2 NV{I|L} 3 9 24.693 0 0 1.9838 0 0 900.4948597638687 0 900.4948597638687 0 17.703037561203843 0 0 0 0 0 0 0 NV{I|L} 1.9838 - 5 NaN NaN 117919.5 NaN 18557 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22933 91.932 NaN 319500 35 0 51673 0.261 + 11653 IYVLPMLTI 9 66 539.8144132036969 1077.6142734741936 2 539.8142700195312 MULTI HCD FTMS 0 0 0 22928 56663.0390625 0.3471686836607682 -6 0.170654296875 5 Oxidation (M) _IYVLPM(Oxidation (M))LTI_ ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1 67.34385681178166 0.00994769994983633 2 V[DV][KQ]T{I|L} 7 6 30.634 0 0 2.8428 0 0 276.14741713691564 0 276.14741713691564 0 5.184465535402296 0 0 0 1.610924374808178 0 0.3054621874040891 0 V[DV][KQ]T{I|L} 2.8428 - 557 NaN NaN 144408.7 NaN 18558 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22934 91.936 NaN 204920 35 0 45784 0.261 + -1 QSPLVDTMEG 10 45 546.7457150456421 1091.476877158084 2 547.24853515625 MULTI HCD FTMS 0 0 0 22928 53642.9375 0.7572811272304282 -2 0.0558319091796875 6 Oxidation (M) _QSPLVDTM(Oxidation (M))EG_ REV__ENSG00000100012|ENST00000215812|SEC14L3;REV__nc|ENSG00000100012|Q9UDX4-2|SEC14L3;REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3 7.608950283845883 0.4350283211712914 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 1.9457 0 0 926.3982771598404 0 926.3982771598404 0 8.841349888432362 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 1.9457 + + 11 + NaN NaN 127649.9 NaN 18559 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22935 91.939 NaN 154260 35 0 17715 0.261 + 5459 FILVGPLCL 9 60 487.7906686769128 973.5667844206256 2 487.7906188964844 MULTI HCD FTMS 0 0 0 22928 39161.828125 0.5447640546929542 -2 0.0558319091796875 7 Unmodified _FILVGPLCL_ ENSG00000221836|ENST00000641693|OR2A5;ENSG00000221858|ENST00000641592|OR2A12;ENSG00000221938|ENST00000641068|OR2A14;ENST00000479887.1_1_7:143947766-143948387:-|nuORF 2.302733041254933 0.33356062215410776 2 V{I|L}Y 3 7 7.167 0 0 0.73616 0 0 128.13381430519433 467.1889742486938 595.3227885538881 0 0 0 0 0 0 0 0 0 V{I|L}Y 0.73616 - 16 + NaN NaN 121988.5 NaN 18560 4373 22928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22937 91.944 NaN 1141900 35 0 160230 0.327 + 6993 FPWDIDEAL 9 81 553.2636154533312 1104.5126779734624 2 553.263916015625 MULTI HCD FTMS 0 0 0 22936 464533.09375 0.963893028205285 -1 0.0262451171875 1 Unmodified _FPWDIDEAL_ ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1;nc|ENSG00000186625|O75449-2|KATNA1 64.23631603340823 0.01165516075559909 2 QDEA{I|L} 5 5 49.297 0 0 4.4632 0 0 530.2426014630875 0 530.2426014630875 0 -4.595690636129888 -4.595690636129888 0 0 1.2302046884880937 0 0.3494850021680094 0.3807196863200844 QDEA{I|L} 4.4632 - 821 NaN NaN 265558.1 NaN 18561 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22938 91.948 NaN 482100 35 0 65897 0.261 -1 0 88 502.8143527072398 1003.6141524812796 2 502.81427001953125 MULTI HCD FTMS 0 0 0 22936 199210.078125 0.25129946202622966 6 -0.1573333740234375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.2174 0 0 838.5354304127234 0 838.5354304127234 0 -3.354254107815322 -3.354254107815322 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2174 - 23 + NaN NaN 164261 NaN 18562 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22939 91.952 NaN 345640 35 0 51813 0.261 + 10329 ILPPQLALF 9 66 506.315488147293 1010.6164233613861 2 506.31536865234375 MULTI HCD FTMS 0 0 0 22936 89582.6796875 0.4531499711826131 10 -0.2903900146484375 3 Unmodified _ILPPQLALF_ ENSG00000106546|ENST00000242057|AHR 60.38955033654506 0.017036522530421875 2 {I|L}{I|L}P[QP]{I|L}A{I|L}{M(Oxidation (M))|F} 9 0 + 57.685 0 0 5.7079 5.7079 92.868 0 0 0 10.262576377011356 39.027901858479126 10.262576377011356 57.68532670221276 0 2.3494850021680094 1.154901959985743 0 0 + + {I|L}{I|L}P[QP]{I|L}A{I|L}{M(Oxidation (M))|F} 5.7079 + + 173 NaN NaN 145029 NaN 18563 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22940 91.955 NaN 233820 35 0 40746 0.261 + 5689 FPAGFVLQL 9 48 496.2842212810929 990.5538896289859 2 496.284423828125 MULTI HCD FTMS 0 0 0 22936 78949.2421875 0.6149578292588396 -5 0.13787841796875 4 Unmodified _FPAGFVLQL_ ENSG00000168005|ENST00000294244|SPINDOC 44.40701690623563 0.04511410083598184 2 V{I|L}Q{I|L} 4 5 49.68 0 0 5.0154 0 0 519.2478714007106 0 519.2478714007106 0 34.195925227640984 0 0 0 1.4247425010840047 0 0 0.3494850021680094 + V{I|L}Q{I|L} 5.0154 + + 54 NaN NaN 122433.6 NaN 18564 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22941 91.958 NaN 252850 35 0 15945 0.261 + -1 CILLCPAPVF 10 73 566.7993924812396 NaN 0 566.79931640625 PEAK HCD FTMS 0 0 0 22936 27665.60546875 0.434480210413619 -3 0.0820770263671875 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILLCPAPVF_ REV__ENST00000499291.6_1_12:11709104-11709212:+|nuORF 12.531546534597751 0.32945902202414107 2 V 1 -1 11.154 0 0 0.98566 0 0 867.4369979978322 162.05587183170158 1029.492869829534 0 0 0 0 0 0.805462187404089 0 0 0 V 0.98566 + + 165 + NaN NaN 135554.3 NaN 18565 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22942 91.962 NaN 297630 35 0 56829 0.261 + 33786 YLGIWDSPYV 10 56 606.8002788854388 1211.5860048376776 2 606.8015747070312 MULTI HCD FTMS 0 0 0 22936 77278.4140625 0.6821647373817651 -1 0.0262451171875 6 Unmodified _YLGIWDSPYV_ REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant 15.847184025352803 0.36288280428275715 2 S{I|L}PA{M(Oxidation (M))|F} 5 -1 43.188 0 0 3.5645 0 0 678.2997303693375 0 678.2997303693375 0 33.89075625191822 0 0 0 1.8935078169319297 0 0.805462187404089 0 S{I|L}PA{M(Oxidation (M))|F} 3.5645 - 378 NaN NaN 162144.9 NaN 18566 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22943 91.965 NaN 67533 35 0 10616 0.263 -1 CWCCCCSCSW 10 48 471.1306767305312 NaN 0 471.13092041015625 PEAK HCD FTMS 0 0 0 22936 15513.1953125 0.18597343965762042 -28 0.7660751342773438 7 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))WC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CSCSW_ ENSG00000171700|ENST00000395042|RGS19 0.15932191953741626 0.34004793154798674 2 {M(Oxidation (M))|F} 1 -1 0.71334 0 0 0.075867 0 0 583.0414915452437 207.11147485904533 790.152966404289 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.075867 - 1 + NaN NaN 114178.2 NaN 18567 4374 22936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22945 91.97 NaN 948020 35 0 265500 0.327 + 15742 LPFGPEGPIPF 11 78 585.8134525913252 1169.6123522494504 2 585.8136596679688 MULTI HCD FTMS 0 0 0 22944 519292.03125 1 0 0 1 Unmodified _LPFGPEGPIPF_ REV__ENSG00000111229|ENST00000228825|ARPC3;REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF 43.85829265575387 0.1121014421682581 2 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L} 10 -1 + 54.398 0 0 4.6509 4.6509 84.843 0 0 0 6.254223615525994 26.268871641183758 6.254223615525994 7.363467363607775 0 1.7134679910804405 1.3979400086720375 1.0941876774005248 0 [{I|L}P]{M(Oxidation (M))|F}[TA]E[WP]P{I|L};[{I|L}P]{M(Oxidation (M))|F}[TA][WP]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[WP][TA]EP{I|L};[{I|L}P]{M(Oxidation (M))|F}[PG]{M(Oxidation (M))|F}[PG]EP{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}V{M(Oxidation (M))|F}EP{I|L};[{I|L}P]YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{I|L}{I|L};[YK]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[DP]{M(Oxidation (M))|F}{I|L}{I|L};[{I|L}P]YY{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}VQ{I|L} 4.6509;4.0214;3.7745;2.5214;2.5172;1.6532;1.22;1.0704 -;-;-;-;-;-;-;- 1278 NaN NaN 242445.1 NaN 18568 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22946 91.974 NaN 416550 35 0 136630 0.262 + 10042 IFDLSEVL 8 43 468.2578105547329 934.5010681762658 2 468.2578125 MULTI HCD FTMS 0 0 0 22944 441972.71875 1 0 0 2 Unmodified _IFDLSEVL_ ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant 93.88341677533236 0.03025875853923581 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}SEV{I|L} 8 0 + 76.363 0 0 8.1715 8.1715 97.443 0 0 0 5.484550065040281 65.39381281052492 5.484550065040281 76.36291294060548 0 1.8494850021680094 0 1.274227503252014 0 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}SEV{I|L} 8.1715 + + 124 NaN NaN 158830.2 NaN 18569 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22947 91.978 NaN 282880 35 0 15742 0.261 -1 0 80 422.5819131158917 1264.7239099478752 3 422.5819396972656 MULTI HCD FTMS 0 0 0 22944 254127.171875 0.5980256570816935 27 -0.7557373046875 3 NaN NaN 2 Q 1 -1 8.4113 0 0 0.66507 0 0 678.4034276254127 455.24934337843797 1133.6527710038508 0 0 0 0 0 0.3807196863200844 0 0 0 Q 0.66507 - 60 + NaN NaN 130873.5 NaN 18570 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22948 91.981 NaN 664530 35 0 137590 0.261 + 34577 YPLQLAELL 9 65 530.3077795392849 1058.6010061453696 2 530.3079223632812 MULTI HCD FTMS 0 0 0 22944 315990.25 0.7432535457786865 -4 0.10829925537109375 4 Unmodified _YPLQLAELL_ ENSG00000131089|ENST00000671741|ARHGEF9;ENSG00000136002|ENST00000409359|ARHGEF4;ENSG00000182957|ENST00000382108|SPATA13;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13 47.748688679222035 0.03472022231463587 2 Q{I|L}AE{I|L}{I|L} 6 3 63.716 0 0 6.0189 0 0 373.1982594220719 0 373.1982594220719 0 56.75373472475883 0 0 0 1.9247425010840047 0 0 0.3807196863200844 + Q{I|L}AE{I|L}{I|L} 6.0189 + + 368 NaN NaN 209531.1 NaN 18571 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22949 91.985 NaN 133680 35 0 5557.7 0.261 + -1 LMKLWNEKPL 10 64 644.3604176827344 1286.7062824322686 2 644.3604125976562 MULTI HCD FTMS 0 0 0 22944 87218.2890625 0.38988697548504586 28 -0.788604736328125 5 Oxidation (M) _LM(Oxidation (M))KLWNEKPL_ REV__ENSG00000114346|ENST00000392692|ECT2;REV__nc|ENSG00000114346|Q9H8V3-2|ECT2;REV__nc|ENSG00000114346|Q9H8V3-3|ECT2;REV__nc|ENSG00000114346|Q9H8V3-4|ECT2 2.9952420565917617 0.4594494122822477 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 3 -1 4.437 0 0 0.34483 0 0 0 895.5096631297873 895.5096631297873 0.9421249706470309 0 0 0 0 0 0 0 0 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Q 0.34483 - 47 NaN NaN 121920.1 NaN 18572 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22950 91.988 NaN 127620 35 0 18210 0.262 + 6935 FPVMCNLIF 9 48 542.2716136450466 1082.5286743568931 2 542.2710571289062 MULTI HCD FTMS 0 0 0 22944 61223.84765625 0.061341108853462 13 -0.381805419921875 6 Unmodified _FPVMCNLIF_ REV__ENSG00000169676|ENST00000304374|DRD5 28.486842064014134 0.11819662193267319 2 E{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 45.477 0 0 4.201 0 0 562.2404652326187 0 562.2404652326187 0 21.064921830680703 0 0 0 1.805462187404089 0 0 0 E{I|L}{I|L}{M(Oxidation (M))|F} 4.201 - 58 NaN NaN 111230.1 NaN 18573 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22951 91.991 NaN 59000 35 0 6673.8 0.261 + 27990 TFITVSALF 9 33 499.7815691446348 997.5485853560696 2 499.7818298339844 MULTI HCD FTMS 0 0 0 22944 14450.3271484375 0.3029617666844275 6 -0.16724395751953125 7 Unmodified _TFITVSALF_ ENSG00000070476|ENST00000389709|ZXDC;ENSG00000198205|ENST00000358697|ZXDA;ENSG00000198455|ENST00000374888|ZXDB;nc|ENSG00000070476|Q2QGD7-2|ZXDC;nc|ENSG00000070476|Q2QGD7-3|ZXDC 21.74664581756881 0.17247014374749275 2 S[{I|L}A]{M(Oxidation (M))|F} 4 5 30.005 0 0 3.0079 0 0 561.3145619123062 0 561.3145619123062 0 30.00508444608478 0 0 0 1 0 0.3807196863200844 0 + S[{I|L}A]{M(Oxidation (M))|F} 3.0079 + + 7 NaN NaN 98407.8 NaN 18574 4375 22944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22953 91.996 NaN 1825600 35 0 357620 0.327 + 20255 NYLPFIMEL 9 81 578.2912552508974 1154.5679575685947 2 578.2916259765625 MULTI HCD FTMS 0 0 0 22952 672479.125 0.40196257970855315 -3 0.07868194580078125 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 166.44778350782605 5.759113011535275E-09 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 108.09 0 0 9.3621 9.3621 97.228 0 0 0 27.292999188551235 16.478174818886373 16.478174818886373 27.292999188551235 0 2.579689690656103 1.2218487496163564 0 2.0233623702246373 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}Y{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[CA]|SS}{[TV]|[{I|L}S]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}MPY{I|L}[YN]{I|L};[MT]{I|L}S{I|L}[WY]E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[TV]|[{I|L}S]}{[CA]|SS}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.3621;6.9982;5.1861;4.9254;4.3075;3.4952;2.4367;1.3854;1.2825;1.1532 +;-;-;-;-;-;-;-;-;- + 1099 NaN NaN 373209.4 NaN 18575 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22954 92.001 NaN 447010 35 0 16473 0.261 -1 0 99 641.8826105638228 1281.7506681944456 2 641.8826293945312 MULTI HCD FTMS 0 0 0 22952 469799.78125 0.28469942509384505 27 -0.76239013671875 2 NaN NaN 2 D 1 -1 9.7763 0 0 0.76273 0 0 105.07959458336639 1058.5925997369752 1163.6721943203415 0 0 0 0 0 0.3807196863200844 0 0.3494850021680094 0 D 0.76273 - 202 + NaN NaN 156849 NaN 18576 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22955 92.004 NaN 826520 35 0 113400 0.264 + 20780 PGSCAFPF 8 83 413.18368418407573 824.3528154349515 2 413.1836242675781 MULTI HCD FTMS 0 0 0 22952 104474.625 0.23118758873909373 5 -0.14102935791015625 3 Unmodified _PGSCAFPF_ ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF 2.8892196856762586 0.5377058178582064 2 [YV]WP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 6 7 + 27.625 0 0 3.3511 3.3511 88.514 0 0 0 1.706962271689747 15.41833743429045 1.706962271689747 27.624562618571247 0 0 1.6989700043360187 0 0 [YV]WP{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]} 3.3511 - 61 NaN NaN 219086.5 NaN 18577 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22956 92.008 NaN 1315800 35 0 224650 0.261 + 15832 LPIFPDLQV 9 72 521.3025785296874 1040.5906041261746 2 521.7947387695312 MULTI HCD FTMS 0 0 0 22952 115392.8515625 0.0205339169720846 14 -0.41135406494140625 4 Unmodified _LPIFPDLQV_ ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B 111.28704002717404 0.0027322905094575235 2 {I|L}[{I|L}P]ENP{M(Oxidation (M))|F}{I|L}V 9 4 + 41.393 0 0 3.9778 3.9778 81.665 0 0 0 1.7339374311232802 1.660006443871886 1.660006443871886 1.660006443871886 0 0.6747425010840047 0 0.6307196863200843 0.8494850021680094 {I|L}[{I|L}P]ENP{M(Oxidation (M))|F}{I|L}V;{I|L}[{I|L}P]{M(Oxidation (M))|F}[DP]{I|L}QV;{I|L}[{I|L}P]{M(Oxidation (M))|F}[DP]Q{I|L}V;{I|L}[{I|L}P]EGGP{M(Oxidation (M))|F}{I|L}V;{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[WH]{M(Oxidation (M))|F}{I|L}V 3.9778;3.8183;3.7674;2.2765;0.87736 -;+;-;-;- + 404 + NaN NaN 290768 NaN 18578 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22957 92.011 NaN 672760 35 0 76990 0.261 + 6066 FPEALIPVQL 10 90 563.8289531412987 1125.6433533493973 2 563.8291625976562 MULTI HCD FTMS 0 0 0 22952 130708.8359375 0.6730484399113079 1 -0.032867431640625 5 Unmodified _FPEALIPVQL_ ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 39.94969957227396 0.1458432724694501 2 C(Carbamidomethyl (C))AC(Carbamidomethyl (C)){I|L}[VP]Q{I|L} 8 4 26.398 0 0 2.3452 0 0 166.20238762849732 0 166.20238762849732 0 4.937477419538297 0 0 0 1.589136830878453 0 0 0.7742275032520141 C(Carbamidomethyl (C))AC(Carbamidomethyl (C)){I|L}[VP]Q{I|L} 2.3452 - 531 + NaN NaN 194382.7 NaN 18579 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22958 92.014 NaN 405120 35 0 33857 0.261 + 6946 FPVNQLFDML 10 65 620.307614273246 1238.600675613292 2 620.3079223632812 MULTI HCD FTMS 0 0 0 22952 146565.40625 0.45998837596134684 9 -0.270904541015625 6 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 93.16586880292088 0.0007594237434582029 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 10 0 + 81.068 0 0 6.5451 6.5451 88.821 0 0 0 4.884381005764311 64.87002527416834 4.884381005764311 9.164539485499262 0 2.6989700043360187 0 0 0.8494850021680094 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGGQ{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VN[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VGG[AG]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[NG][{I|L}P]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QN[DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}V[Y{M(Oxidation (M))|F}]QYY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[Y{M(Oxidation (M))|F}][DP]{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VNQ[YE]{[ET]|[MV]}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VN[C(Carbamidomethyl (C)){M(Oxidation (M))|F}]{I|L}{[ET]|[MV]}{I|L} 6.5451;5.8052;5.8052;4.3824;4.0916;2.4758;2.2718;2.1869;1.946;1.2178 +;-;-;-;-;-;-;-;-;- + 473 NaN NaN 144975.4 NaN 18580 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22959 92.018 NaN 275330 35 0 59368 0.261 + 952 AYEIIDQFF 9 62 573.2792684956456 1144.5439840580912 2 573.279052734375 MULTI HCD FTMS 0 0 0 22952 97641.6171875 0.037533546805689176 12 -0.3555908203125 7 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 31.26834338654808 0.10542797264966089 2 {I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 51.631 0 0 4.511 0 0 363.14366347480626 0 363.14366347480626 0 33.047444008242906 0 0 0 1.3494850021680094 0 0 0 + {I|L}{I|L}DQ{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.511 + + 117 NaN NaN 134315.9 NaN 18581 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22960 92.021 NaN 373040 35 0 44020 0.261 + 613 APFQNGYHRL 10 74 601.8081466466397 1201.6017403600792 2 601.7958984375 MULTI HCD FTMS 0 0 0 22952 12557.9052734375 0.10342188372619719 -3 0.07868194580078125 8 Unmodified _APFQNGYHRL_ REV__ENSG00000141540|ENST00000269346|TTYH2;REV__nc|ENSG00000141540|Q9BSA4-2|TTYH2 9.38312468134398 0.42334543440173333 2 CV{I|L} 3 -1 19.041 0 0 1.5846 0 0 868.4076766531181 0 868.4076766531181 0 -1.989700043360184 -1.989700043360184 0 0 0 0 0 0 CV{I|L} 1.5846 - 163 NaN NaN 149564.3 NaN 18582 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22961 92.024 NaN 172580 35 0 27420 0.261 + 22977 QYYLQQCF 8 46 546.7457150456421 1091.476877158084 2 546.7451171875 MULTI HCD FTMS 0 0 0 22952 17816.087890625 0.23484608115675887 1 -0.032867431640625 9 Unmodified _QYYLQQCF_ ENST00000520647.5_1_5:153789305-153796529:+|nuORF 8.593279151180031 0.5292430274356741 2 {M(Oxidation (M))|F} 1 7 21.237 0 0 1.9457 0 0 926.3981093131607 0 926.3981093131607 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 1.9457 + + 26 + NaN NaN 119612.1 NaN 18583 4376 22952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22963 92.029 NaN 2760400 35 0 433930 0.327 + 617 APFTEGISFVL 11 89 590.816319596517 NaN 0 590.80517578125 PEAK HCD FTMS 0 0 0 22962 284327.28125 0.4101485527891176 -2 0.05908203125 1 Unmodified _APFTEGISFVL_ ENSG00000128335|ENST00000358502|APOL2 103.35351024395868 3.2309891851239074E-07 2 VC{I|L}STET{M(Oxidation (M))|F} 8 9 60.888 0 0 5.1617 0 0 131.0955300290803 165.06696497135002 296.16249500043034 0 0 0 0 0 1.5356668758921828 0 1.4876954943324545 0 VC{I|L}STET{M(Oxidation (M))|F} 5.1617 - 6509 + NaN NaN 515561.8 NaN 18584 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22964 92.034 NaN 720690 35 0 69559 0.261 + 8643 HFAIDSLTGEI 11 90 601.8081466466397 1201.6017403600792 2 602.2987670898438 MULTI HCD FTMS 0 0 0 22962 41733.0234375 0.6269557939598329 -2 0.05908203125 2 Unmodified _HFAIDSLTGEI_ ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 17.11289562659939 0.30797719109864646 2 APTY[VP]SHTV{I|L} 11 9 AP + + 37.749 18.583 9.9869 3.1415 3.1415 60.18 0 0 0 0 -16.641682614712124 -16.641682614712124 0 0 0.3807196863200844 0 0.6139829889124311 0 APTY[VP]SHTV{I|L} 3.1415 - 3114 NaN NaN 204136.8 NaN 18585 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22965 92.037 NaN 259420 35 0 61462 0.261 + 6809 FPSEVLTIF 9 48 526.7866975815098 1051.5588422298194 2 526.7871704101562 MULTI HCD FTMS 0 0 0 22962 112803.53125 0.8385017175553013 -2 0.05908203125 3 Unmodified _FPSEVLTIF_ ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9 39.957323273324995 0.06554068735427583 2 {I|L}T{I|L}{M(Oxidation (M))|F} 4 5 56.983 0 0 5.4189 0 0 559.2604847638687 0 559.2604847638687 0 44.075221787320515 0 0 0 2 0 0.805462187404089 0 + {I|L}T{I|L}{M(Oxidation (M))|F} 5.4189 + + 178 NaN NaN 131554.9 NaN 18586 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22966 92.04 NaN 252230 35 0 56059 0.261 -1 MNRKDFVVL 9 50 582.3157086687546 NaN 0 582.3034057617188 PEAK HCD FTMS 0 0 0 22962 16148.40625 0.8791830259926264 1 -0.02617645263671875 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MNRKDFVVL_ ENSG00000169064|ENST00000675490|ZBBX;nc|ENSG00000169064|A8MT70|ZBBX;ZBBX|p.P378Qfs*2|1|0.15|ENSG00000169064|chr3:167317066-167317066|G/-|frameshift_variant 3.5964929083625545 0.27781873954207675 2 {I|L}T{M(Oxidation (M))|F} 3 -1 14.425 0 0 1.2407 0 0 115.09003396979308 683.3045811372862 798.3946151070793 0 0 0 0 0 0 0 0.4247425010840047 0 {I|L}T{M(Oxidation (M))|F} 1.2407 - 16 + NaN NaN 134152.6 NaN 18587 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22967 92.044 NaN 290560 35 0 38453 0.261 + 15125 LMLCWLSF 8 62 506.7530303597173 1011.4915077862346 2 506.7528991699219 MULTI HCD FTMS 0 0 0 22962 59424.91796875 0.04705149282795302 13 -0.37848663330078125 5 Unmodified _LMLCWLSF_ REV__ENSG00000138346|ENST00000358410|DNA2;REV__nc|ENSG00000138346|P51530-2|DNA2;REV__nc|ENSG00000138346|P51530-3|DNA2;REV__nc|ENSG00000138346|P51530-4|DNA2 20.871210003555333 0.44023077629866025 2 {I|L}A{I|L}[KA]A{I|L}{M(Oxidation (M))|F} 8 -1 31.151 0 0 3.0798 0 0 165.95488720120528 0 165.95488720120528 0 12.86297847284061 0 0 0 0.3807196863200844 0 0 0 {I|L}A{I|L}[KA]A{I|L}{M(Oxidation (M))|F} 3.0798 - 153 + NaN NaN 134601.2 NaN 18588 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22968 92.047 NaN 83738 35 0 6985.2 0.261 + -1 LWCQLLRLRL 10 46 457.6080627048665 1369.8023587147995 3 457.6080627441406 MULTI HCD FTMS 0 0 0 22962 23525.013671875 0.19202972211761876 -11 0.29840850830078125 6 Carbamidomethyl (C) _LWC(Carbamidomethyl (C))QLLRLRL_ REV__ENST00000574767.5_1_17:78704403-78727934:+|nuORF 0.6976657623105312 0.47161084886498755 2 P 1 -1 6.9897 0 0 0.51027 0 0 556.3858372449004 713.3280123346311 1269.7138495795316 0 0 0 0 0 0 0 0 0 P 0.51027 - 3 + NaN NaN 101369.5 NaN 18589 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22969 92.05 NaN 97792 35 0 5634.9 0.261 -1 FCAMSCPPSL 10 47 556.7310985697119 NaN 0 556.7304077148438 PEAK HCD FTMS 0 0 0 22962 5900.12109375 0.23885622728449415 1 -0.02617645263671875 7 Carbamidomethyl (C) _FCAMSC(Carbamidomethyl (C))PPSL_ ENSG00000110799|ENST00000261405|VWF;VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant 3.5964929083625545 0.337106189561315 2 A 1 -1 5.4846 0 0 0.49346 0 0 60.95288357913211 976.4109591119749 1037.363842691107 0 0 0 0 0 0 0 0 0 A 0.49346 + + 19 + NaN NaN 109113.3 NaN 18590 4377 22962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22971 92.055 NaN 698710 35 0 26008 0.327 -1 0 100 633.3693349814924 1264.7241170297848 2 633.369384765625 MULTI HCD FTMS 0 0 0 22970 874164.1875 0.28385868716797874 29 -0.8183975219726562 1 NaN NaN 2 N{[HG]|PP}N 4 -1 9.2133 0 0 0.72848 0 0 824.4659290998062 0 824.4659290998062 0 0.4847982616820641 0 0 0 0.3807196863200844 0 0 0 N{[HG]|PP}N 0.72848 - 129 NaN NaN 217713.7 NaN 18591 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22972 92.06 NaN 1406900 35 0 162080 0.262 + 1451 AYSLNFPLL 9 83 519.2871084112979 1036.5596638893958 2 519.2872314453125 MULTI HCD FTMS 0 0 0 22970 482146.5625 0.7689287151032216 -1 0.02617645263671875 2 Unmodified _AYSLNFPLL_ ENSG00000140400|ENST00000267978|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1 214.13773924641143 3.284580410505023E-19 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}N{M(Oxidation (M))|F}P{I|L}{I|L} 9 0 + 108.94 0 0 10.51 10.51 97.607 0 0 0 15.106442888633254 87.91115956849247 15.106442888633254 23.455612550363796 0 2.555462187404089 1.0969100130080565 1.860924374808178 1.4247425010840047 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}N{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}GG{M(Oxidation (M))|F}P{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 10.51;8.2472;4.8391 +;-;- + 501 NaN NaN 318931.4 NaN 18592 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22973 92.063 NaN 510380 35 0 119990 0.262 -1 0 40 405.1188912146128 808.2232294960256 2 405.11871337890625 MULTI HCD FTMS 0 0 0 22970 52518.91796875 0.2766833947689456 -1 0.02617645263671875 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 162143.4 NaN 18593 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22974 92.067 NaN 250400 35 0 33149 0.261 + 28442 TPKKGRSIT 9 63 494.30092743872706 986.5873019442541 2 494.3009338378906 MULTI HCD FTMS 0 0 0 22970 127885.4140625 0.11296830271493838 10 -0.29654693603515625 4 Unmodified _TPKKGRSIT_ REV__ENSG00000100426|ENST00000216268|ZBED4 3.944395688203298 0.32111559684428237 2 D 1 -1 4.4897 0 0 0.45507 0 0 396.2363630788229 472.30658899478755 868.5429520736104 0 0 0 0 0 0.25 0 0 0 D 0.45507 - 5 + NaN NaN 127436.4 NaN 18594 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22975 92.07 NaN 634070 35 0 101670 0.261 -1 PLEIVEMFA 9 76 532.7702772811564 1063.5260016291127 2 533.2555541992188 MULTI HCD FTMS 0 0 0 22970 5491.90625 0.0916645053338304 -20 0.5439605712890625 5 Oxidation (M) _PLEIVEM(Oxidation (M))FA_ ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF;nc|ENSG00000163625|Q8IZQ1-2|WDFY3 12.531546534597751 0.2520865569484384 2 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8 -1 57.204 0 0 5.3787 0 0 113.05443366264247 0 113.05443366264247 0 30.542359562158126 0 0 0 0.7302046884880937 0 0.3807196863200844 0 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 5.3787 - 751 + NaN NaN 202524 NaN 18595 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22976 92.073 NaN 157780 35 0 15587 0.261 -1 RLTTQSCC 8 56 484.71891771367376 967.4232824941475 2 484.7182312011719 MULTI HCD FTMS 0 0 0 22970 37230.57421875 0.27011514677660103 -3 0.08525848388671875 6 Carbamidomethyl (C) _RLTTQSC(Carbamidomethyl (C))C_ ENST00000372819.5_1_20:43566725-43581329:+|nuORF;ENST00000372826.6_1_20:43566725-43587002:+|nuORF 5.760428011301431 0.5334459684533844 2 SC(Carbamidomethyl (C)) 2 -1 13.271 0 0 1.3718 0 0 424.2805576247459 293.04277515914913 717.323332783895 0 0 0 0 0 0.3807196863200844 0 0 0 SC(Carbamidomethyl (C)) 1.3718 + + 18 + NaN NaN 123424.2 NaN 18596 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22977 92.077 NaN 188860 35 0 22232 0.261 -1 0 54 451.93253336616567 1352.775770698697 3 451.9324035644531 MULTI HCD FTMS 0 0 0 22970 83331.4375 0.296213724841996 -14 0.37694549560546875 7 NaN NaN 2 V 1 -1 6.7827 0 0 0.50139 0 0 850.4797024387345 400.2017000787719 1250.6814025175065 0 0 0 0 0 0.5 0 0 0 V 0.50139 - 23 + NaN NaN 126971.9 NaN 18597 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22978 92.08 NaN 126980 35 0 6201 0.261 + 21399 PVLPDPLESF 10 66 557.295086968583 1112.5756210039658 2 557.2952880859375 MULTI HCD FTMS 0 0 0 22970 22571.78125 0.7830798009794907 1 -0.02953338623046875 8 Unmodified _PVLPDPLESF_ REV__ENSG00000160007|ENST00000672722|ARHGAP35;REV__ENST00000595822.1_1_19:47492766-47503942:+|nuORF;REV__ENST00000596593.1_1_19:47492844-47500764:+|nuORF 22.736283301280096 0.29844449404982915 2 {I|L}ES{M(Oxidation (M))|F} 4 -1 41.459 0 0 3.7264 0 0 618.3389704686127 0 618.3389704686127 0 29.776296993281406 0 0 0 1.3807196863200843 0 0.3494850021680094 0 {I|L}ES{M(Oxidation (M))|F} 3.7264 + + 183 + NaN NaN 117836.7 NaN 18598 4378 22970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22980 92.085 NaN 576980 35 0 86884 0.327 + 6994 FPWDIDEAL 9 84 553.2636154533312 1104.5126779734624 2 553.2637329101562 MULTI HCD FTMS 0 0 0 22979 246639.875 0.5117707633503193 4 -0.11975860595703125 1 Unmodified _FPWDIDEAL_ ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1;nc|ENSG00000186625|O75449-2|KATNA1 54.773552608820026 0.024892918755467567 2 DEA{I|L} 4 5 43.162 0 0 3.9078 0 0 658.3105881543617 0 658.3105881543617 0 20.510299956639813 0 0 0 1.274227503252014 0 0.3252574989159953 0 + DEA{I|L} 3.9078 + + 1473 NaN NaN 184820.2 NaN 18599 4379 22979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22981 92.089 NaN 474000 35 0 71202 0.261 + 14686 LGYLSHMSSSI 11 72 597.7954982099394 1193.5764434866787 2 597.7952880859375 MULTI HCD FTMS 0 0 0 22979 145005.875 0.672271064937812 3 -0.08699798583984375 2 Unmodified _LGYLSHMSSSI_ REV__ENSG00000141232|ENST00000499247|TOB1 22.736283301280096 0.2589804299186601 2 ES{I|L}PA{M(Oxidation (M))|F} 6 -1 46.119 0 0 3.864 0 0 531.2524281232437 0 531.2524281232437 0 27.897131498072124 0 0 0 1.8182503180159344 0 0.7302046884880937 0 ES{I|L}PA{M(Oxidation (M))|F} 3.864 - 207 NaN NaN 166962.7 NaN 18600 4379 22979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22982 92.093 NaN 1163900 35 0 100370 0.261 + 26866 SYIPLFPQL 9 89 539.3024992409976 1076.590445548795 2 539.8145751953125 MULTI HCD FTMS 0 0 0 22979 113522.4453125 0.12992937452806191 -6 0.16725921630859375 3 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 32.78568957990786 0.09846250359632436 2 YS{I|L}[{I|L}P]Q[{I|L}P]{M(Oxidation (M))|F} 9 5 + 45.556 0 0 4.2315 4.2315 81.76 0 0 0 -1.5578750293529708 1.438937347570075 -1.5578750293529708 1.2371250542002343 0 1.3494850021680094 1.6989700043360187 0 0 YS{I|L}[{I|L}P]Q[{I|L}P]{M(Oxidation (M))|F};YS{I|L}[QP]{I|L}[{I|L}P]{M(Oxidation (M))|F};YS{I|L}[{I|L}P]{M(Oxidation (M))|F}[{I|L}A][PG];[Y{I|L}]S[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]V[TP]{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]V[DV]{I|L}V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]S[{I|L}P][{I|L}P]Q{M(Oxidation (M))|F};[Y{I|L}]V[DV]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L};[Y{I|L}][{I|L}A]E{I|L}V{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 4.2315;4.1166;4.0504;3.3726;2.7446;2.6747;2.6558;2.5806;2.4899;2.4686 -;-;-;-;-;-;+;-;-;- + 1363 + NaN NaN 270773.4 NaN 18601 4379 22979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22983 92.096 NaN 227230 35 0 22705 0.261 + 3548 EIQIPYVF 8 59 504.77385176949423 1007.5331506057885 2 505.27545166015625 MULTI HCD FTMS 0 0 0 22979 20758.701171875 0.40204712208167065 4 -0.11975860595703125 4 Unmodified _EIQIPYVF_ ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1 12.531546534597751 0.5015908124873912 2 V{M(Oxidation (M))|F} 2 6 29.776 0 0 2.9554 0 0 743.3867042428819 0 743.3867042428819 0 17.46916566231569 0 0 0 0.8807196863200843 0 0 0 + V{M(Oxidation (M))|F} 2.9554 + + 32 NaN NaN 122181.4 NaN 18602 4379 22979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22985 92.101 NaN 870030 35 0 248430 0.327 + 6495 FPIPGEPGFPL 11 72 585.8134525913252 1169.6123522494504 2 585.8136596679688 MULTI HCD FTMS 0 0 0 22984 322782.6875 0.6215822082288115 5 -0.16600799560546875 1 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 49.93300154707207 0.08169340801462911 2 M[PG]E[PG]EP{I|L} 9 4 51.137 0 0 4.3721 0 0 244.1785603253922 0 244.1785603253922 0 31.495521576853918 0 0 0 2.2302046884880937 0 0.7742275032520141 0 M[PG]E[PG]EP{I|L} 4.3721 - 927 NaN NaN 228131.7 NaN 18603 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22986 92.106 NaN 1025200 35 0 135770 0.261 + 26867 SYIPLFPQL 9 81 539.3024992409976 1076.590445548795 2 539.3026733398438 MULTI HCD FTMS 0 0 0 22984 200546.15625 0.13977384934836293 -4 0.10489654541015625 2 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 53.832793166522166 0.026208976789938845 2 [Y{I|L}]VQ{I|L}P{I|L} 7 5 43.248 0 0 4.0172 0 0 0 247.07071113833152 247.07071113833152 30.35576416719472 0 0 0 0 1.3494850021680094 1.154901959985743 0 0 [Y{I|L}]VQ{I|L}P{I|L} 4.0172 - 1466 NaN NaN 248847.8 NaN 18604 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22987 92.109 NaN 164510 35 0 48368 0.261 + 10043 IFDLSEVL 8 38 468.2578105547329 934.5010681762658 2 468.25775146484375 MULTI HCD FTMS 0 0 0 22984 77128 0.17450850862047693 5 -0.16600799560546875 3 Unmodified _IFDLSEVL_ ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant 42.09456458481378 0.20402248593209013 2 {I|L}SEV{I|L} 5 3 54.196 0 0 5.7995 0 0 375.1782398908219 0 375.1782398908219 0 47.2062251842808 0 0 0 1.4247425010840047 0 0.8494850021680094 0 + {I|L}SEV{I|L} 5.7995 + + 27 NaN NaN 109895.8 NaN 18605 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22988 92.112 NaN 80314 35 0 11760 0.261 -1 0 36 480.2809794434429 958.5474059536858 2 480.28076171875 MULTI HCD FTMS 0 0 0 22984 54580.13671875 0.09065370486712261 14 -0.3980865478515625 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5236 0 0 793.4687601790749 0 793.4687601790749 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5236 - 6 + NaN NaN 93801.4 NaN 18606 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22989 92.116 NaN 231540 35 0 48743 0.261 + 33587 YIQDVLLQ 8 40 496.27498987923406 NaN 0 496.2843322753906 PEAK HCD FTMS 0 0 0 22984 7046.49365234375 1 0 0 5 Unmodified _YIQDVLLQ_ REV__CREBBP-TRAP1|1|fusion;REV__CREBBP-TRAP1|2|fusion;REV__CREBBP-TRAP1|3|fusion;REV__ENSG00000126602|ENST00000246957|TRAP1;REV__nc|ENSG00000126602|Q12931-2|TRAP1 8.593279151180031 0.38822285293237185 2 Q{I|L}V 3 -1 16.198 0 0 1.6353 0 0 131.07673380905788 516.2245108201978 647.3012446292557 0 0 0 0 0 0 0 0 0 Q{I|L}V 1.6353 - 26 + NaN NaN 118066.2 NaN 18607 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22990 92.119 NaN 464890 35 0 38122 0.261 + 28735 TSVSFSFLCVI 11 87 601.8081466466397 1201.6017403600792 2 601.8075561523438 MULTI HCD FTMS 0 0 0 22984 62207.859375 0.5123190419938387 1 -0.0361328125 6 Unmodified _TSVSFSFLCVI_ nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 13.042465956692817 0.3434429782671734 2 A{[ES]|[DT]|[{I|L}C]}YKHS 7 10 30.877 0 0 2.5696 0 0 0 396.1896151178344 396.1896151178344 9.541972798529695 0 0 0 0 0.3252574989159953 0 0.3054621874040891 0 A{[ES]|[DT]|[{I|L}C]}YKHS 2.5696 - 845 + NaN NaN 158776.2 NaN 18608 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22991 92.122 NaN 226540 35 0 38165 0.261 + 33787 YLGIWDSPYV 10 53 606.8002788854388 1211.5860048376776 2 606.8008422851562 MULTI HCD FTMS 0 0 0 22984 75048.53125 0.6624807487591347 5 -0.16600799560546875 7 Unmodified _YLGIWDSPYV_ REV__HECW2|p.D87Y|1|0.1|ENSG00000138411|chr2:196433165-196433165|C/A|missense_variant 15.847184025352803 0.36288280428275715 2 S{I|L}[PA]{M(Oxidation (M))|F} 5 -1 35.942 0 0 2.9665 0 0 678.3022938459 0 678.3022938459 0 26.989700043360187 0 0 0 1.4247425010840047 0 0.4247425010840047 0 S{I|L}[PA]{M(Oxidation (M))|F} 2.9665 - 57 NaN NaN 126011.4 NaN 18609 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22992 92.126 NaN 168280 35 0 25071 0.261 + -1 MMVQITTVM 9 55 543.2576317380449 NaN 0 543.2686767578125 PEAK HCD FTMS 0 0 0 22984 10871.384765625 1 0 0 8 2 Oxidation (M) _MM(Oxidation (M))VQITTVM(Oxidation (M))_ REV__nc|ENSG00000068079|P80217-2|IFI35 10.823927491677226 0.2427956001690155 2 VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L} 6 -1 18.901 0 0 1.7428 0 0 264.0694986217413 162.05593286685783 426.12543148859913 0 0 0 0 0 0.5 0 0 0 VA{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L} 1.7428 - 34 + NaN NaN 134874.1 NaN 18610 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22993 92.129 NaN 47904 35 0 4262.5 0.261 + -1 VLCLPLFL 8 32 487.7906686769128 973.5667844206256 2 487.7905578613281 MULTI HCD FTMS 0 0 0 22984 18232.20703125 0.25362071955993853 5 -0.16600799560546875 9 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))LPLFL_ REV__ENST00000372718.7_1_1:40887788-40887878:+|nuORF 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.56335 0 0 71.18542560798114 752.2716158502561 823.4570414582373 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.56335 + + 3 + NaN NaN 97981.7 NaN 18611 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22994 92.132 NaN 156090 35 0 14973 0.261 + 29231 TYLIVTSLL 9 47 511.81029377794874 1021.6060346226975 2 511.8115234375 MULTI HCD FTMS 0 0 0 22984 16095.388671875 0.23189897595508732 -8 0.209808349609375 10 Unmodified _TYLIVTSLL_ ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-2|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1 30.636539890814138 0.10832830463492794 2 VTS{I|L}{I|L} 5 4 40.445 0 0 3.959 0 0 490.2791664060394 0 490.2791664060394 0 25.752574989159953 0 0 0 1.742992819099939 0 0.3807196863200844 0 + VTS{I|L}{I|L} 3.959 + + 124 NaN NaN 110220.1 NaN 18612 4380 22984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22996 92.138 NaN 565700 35 0 71985 0.327 + 34578 YPLQLAELL 9 74 530.3077795392849 1058.6010061453696 2 530.3079223632812 MULTI HCD FTMS 0 0 0 22995 135256.890625 0.31814324507807196 2 -0.0673065185546875 1 Unmodified _YPLQLAELL_ ENSG00000131089|ENST00000671741|ARHGEF9;ENSG00000136002|ENST00000409359|ARHGEF4;ENSG00000182957|ENST00000382108|SPATA13;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13 47.748688679222035 0.03472022231463587 2 QAE{I|L}{I|L} 5 4 46.186 0 0 4.3629 0 0 486.28823292029995 0 486.28823292029995 0 22.23320034371433 0 0 0 1.3494850021680094 0 0 0.4247425010840047 QAE{I|L}{I|L} 4.3629 - 726 NaN NaN 191433.9 NaN 18613 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22997 92.142 NaN 192980 35 0 8701 0.262 -1 0 57 422.5819131158917 1264.7239099478752 3 422.581787109375 MULTI HCD FTMS 0 0 0 22995 105101.171875 0.2473297007433707 33 -0.9034194946289062 2 NaN NaN 2 Q 1 -1 3.9794 0 0 0.31465 0 0 678.4026341683815 455.24828638594755 1133.650920554329 0 0 0 0 0 0 0 0 0 Q 0.31465 - 12 + NaN NaN 116900.1 NaN 18614 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22998 92.146 NaN 641880 35 0 170320 0.261 -1 PLEIVEMFA 9 72 532.7702772811564 1063.5260016291127 2 532.7858276367188 MULTI HCD FTMS 0 0 0 22995 11092.7978515625 0.11360367341005013 -14 0.3903656005859375 3 Oxidation (M) _PLEIVEM(Oxidation (M))FA_ ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF;nc|ENSG00000163625|Q8IZQ1-2|WDFY3 12.531546534597751 0.2520865569484384 2 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8 -1 57.644 0 0 5.4201 0 0 113.05476030595055 0 113.05476030595055 0 24.27948461635836 0 0 0 0.7302046884880937 0 0.4247425010840047 0 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 5.4201 - 966 + NaN NaN 193150.5 NaN 18615 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 22999 92.149 NaN 1200600 35 0 216830 0.261 + 10921 IYADYIAPLF 10 70 593.3128754391342 1184.6111979450684 2 593.312255859375 MULTI HCD FTMS 0 0 0 22995 213864.359375 0.24784750535810388 -3 0.0819854736328125 4 Unmodified _IYADYIAPLF_ ENSG00000084073|ENST00000372759|ZMPSTE24 46.020951573049366 0.09315764076686055 2 [YV]AEY{I|L}AP{I|L}{M(Oxidation (M))|F} 10 2 + 42.22 0 0 3.564 3.564 82.901 0 0 0 4.259687322722812 14.393630146118266 4.259687322722812 5.809159218443796 0 1.8882104921644451 0 0.3494850021680094 0 [YV]AEY{I|L}AP{I|L}{M(Oxidation (M))|F};[YV]AES{I|L}{M(Oxidation (M))|F}P{I|L}{M(Oxidation (M))|F};[YV]AES{M(Oxidation (M))|F}{I|L}P{I|L}{M(Oxidation (M))|F};[YV]AEYA{I|L}P{I|L}{M(Oxidation (M))|F};[YV]{I|L}A[YE]AP{I|L}{M(Oxidation (M))|F};[YV]A{I|L}[YE]AP{I|L}{M(Oxidation (M))|F} 3.564;3.0737;2.9918;2.5519;2.4757;2.3078 -;-;-;-;-;- 1431 NaN NaN 278646.8 NaN 18616 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23000 92.153 NaN 113510 35 0 6272 0.264 -1 0 57 437.25721486719715 1308.7498152017915 3 437.2575988769531 MULTI HCD FTMS 0 0 0 22995 35636.03125 0.08001544521722766 -22 0.5997238159179688 5 NaN NaN 2 Q 1 -1 4.732 0 0 0.36156 0 0 960.5580560238603 217.10830103092033 1177.6663570547807 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.36156 - 4 + NaN NaN 101993.5 NaN 18617 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23001 92.156 NaN 287470 35 0 59594 0.261 + 18403 MPSILADVF 9 45 496.75967697378167 991.5048010143634 2 496.7596740722656 MULTI HCD FTMS 0 0 0 22995 66801.6484375 0.5179121816960502 -1 0.0361328125 6 Unmodified _MPSILADVF_ ENSG00000125676|ENST00000245838|THOC2 30.636539890814138 0.10832830463492794 2 ADV{M(Oxidation (M))|F} 4 5 40.042 0 0 4.0385 0 0 541.29496962715 0 541.29496962715 0 8.10378004088497 0 0 0 1.5629529932484498 0 0 0 + ADV{M(Oxidation (M))|F} 4.0385 + + 135 NaN NaN 134806.1 NaN 18618 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23002 92.16 NaN 228310 35 0 40351 0.261 + 26973 SYLNNELEN 9 49 548.2501981856689 1094.4858434381376 2 548.2509765625 MULTI HCD FTMS 0 0 0 22995 59599.92578125 0.8628013709746282 -2 0.05245208740234375 7 Unmodified _SYLNNELEN_ tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1 3.2813086475875832 0.32614229037259 2 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.4148 0 0 929.4062973949721 0 929.4062973949721 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4148 - 9 + NaN NaN 126276.8 NaN 18619 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23003 92.164 NaN 89887 35 0 6765.7 0.261 + 34822 YRHVPLQSL 9 47 556.813448483828 1111.6123440344559 2 556.8142700195312 MULTI HCD FTMS 0 0 0 22995 16509.248046875 0.4995214419194895 -1 0.0361328125 8 Unmodified _YRHVPLQSL_ ENSG00000154822|ENST00000615277|PLCL2;nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2 9.38312468134398 0.279288223203164 2 EN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}MQ{[TV]|[{I|L}S]} 8 5 21.203 0 0 1.9074 0 0 132.17363202963867 0 132.17363202963867 0 13.244171855527966 0 0 0 0.8807196863200843 0 0 0 EN{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}MQ{[TV]|[{I|L}S]} 1.9074 - 78 + NaN NaN 95398 NaN 18620 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23004 92.167 NaN 86295 35 0 10483 0.261 + 6972 FPVRMDNA 8 43 475.2308278516273 NaN 0 474.7919006347656 PEAK HCD FTMS 0 0 0 22995 2113.93359375 0.24139280365153412 -1 0.0361328125 9 Unmodified _FPVRMDNA_ ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1 10.183394434864962 0.38822285293237185 2 V 1 7 6.9897 0 0 0.73696 0 0 605.2583343147796 241.09812341861564 846.3564577333952 0 0 0 0 0 0 0 0 0 + V 0.73696 + + 4 + NaN NaN 110872.1 NaN 18621 4381 22995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23006 92.172 NaN 3332100 35 0 700540 0.327 + 20256 NYLPFIMEL 9 87 578.2912552508974 1154.5679575685947 2 578.2919311523438 MULTI HCD FTMS 0 0 0 23005 1668446.625 0.9972846510157902 3 -0.09532928466796875 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 197.16714112316518 2.0801358606533006E-17 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 110.43 0 0 9.5645 9.5645 97.079 0 0 0 24.108631691215464 16.478174818886373 16.478174818886373 24.108631691215464 0 2.6549471895720984 1.3010299956639813 0 2.1025684359364405 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}M{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}{I|L}M{I|L}[EP]Y;[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[RE]|[WV]}S[YV]{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{I|L}M{I|L}[EP]Y;{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{[CA]|SS}S{I|L}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 9.5645;7.4764;6.3552;5.9691;5.331;5.0703;4.4532;4.4378;3.881;2.6263 +;-;-;-;-;-;-;-;-;- + 2969 NaN NaN 607185.1 NaN 18622 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23007 92.176 NaN 2608000 35 0 619440 0.261 + 10497 IPEDLPFVL 9 75 521.7944764957672 1041.5744000583343 2 521.7950439453125 MULTI HCD FTMS 0 0 0 23005 1801668.125 0.951002223350785 -1 0.0345458984375 2 Unmodified _IPEDLPFVL_ ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant 36.04419817259434 0.08350412372117409 2 S{M(Oxidation (M))|F}P[HA]EV{I|L} 8 7 49.602 0 0 4.7622 0 0 143.12535292793126 0 143.12535292793126 0 34.997906580286795 0 0 0 0.9247425010840047 0 0.6989700043360187 0 S{M(Oxidation (M))|F}P[HA]EV{I|L} 4.7622 - 360 NaN NaN 484229.4 NaN 18623 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23008 92.18 NaN 2048700 35 0 250590 0.261 + 618 APFTEGISFVL 11 93 590.816319596517 NaN 0 590.809326171875 PEAK HCD FTMS 0 0 0 23005 409440.09375 0.5906266228380191 2 -0.0623779296875 3 Unmodified _APFTEGISFVL_ ENSG00000128335|ENST00000358502|APOL2 103.35351024395868 3.2309891851239074E-07 2 VC{I|L}STET{M(Oxidation (M))|F} 8 9 54.001 0 0 4.5778 0 0 131.0949270180077 165.06646143131096 296.1613884493187 0 0 0 0 0 1.5189301784845295 0 1.1747425010840047 0 VC{I|L}STET{M(Oxidation (M))|F} 4.5778 - 7710 + NaN NaN 405775.2 NaN 18624 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23009 92.183 NaN 230290 35 0 10990 0.261 -1 0 79 641.8826105638228 1281.7506681944456 2 641.8824462890625 MULTI HCD FTMS 0 0 0 23005 320214.90625 0.1940507496050574 33 -0.9016876220703125 4 NaN NaN 2 D 1 -1 10.969 0 0 0.85579 0 0 105.08252310358519 1058.5990694635377 1163.6815925671228 0 0 0 0 0 0.4247425010840047 0 0.4247425010840047 0 D 0.85579 - 39 + NaN NaN 144183.9 NaN 18625 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23010 92.186 NaN 354320 35 0 46443 0.262 -1 LLVCFYEI 8 57 528.7749143837757 1055.5352758343513 2 528.7841796875 MULTI HCD FTMS 0 0 0 23005 61277.2265625 0.03257667934089578 36 -0.9570465087890625 5 Carbamidomethyl (C) _LLVC(Carbamidomethyl (C))FYEI_ ENSG00000137414|ENST00000259963|FAM8A1 24.67388899826682 0.4122521268485776 2 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 + 32.911 0 0 3.118 3.118 81.465 0 0 0 1.5988782592068418 -3.375371849193627 -3.375371849193627 3.0102999566398125 0 0.75 0 0.3807196863200844 0 [YE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{I|L} 3.118;2.8328 -;- 226 NaN NaN 137680 NaN 18626 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23011 92.19 NaN 265250 35 0 38166 0.261 + 6947 FPVNQLFDML 10 59 620.307614273246 1238.600675613292 2 620.307373046875 MULTI HCD FTMS 0 0 0 23005 78601.4453125 0.24668680081191732 15 -0.422637939453125 6 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 51.41523569358685 0.07264263333115425 2 D{M(Oxidation (M))|F}{I|L}QN[DP]{I|L} 8 7 66.235 0 0 5.3476 0 0 278.12947280097814 0 278.12947280097814 0 51.542294029923 0 0 0 2.3494850021680094 0 0.3807196863200844 0.3807196863200844 D{M(Oxidation (M))|F}{I|L}QN[DP]{I|L} 5.3476 - 133 NaN NaN 126196.3 NaN 18627 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23012 92.193 NaN 351260 35 0 43332 0.261 + 1741 CKYREDYF 8 74 562.2475270694683 1122.4805012057366 2 562.7688598632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _CKYREDYF_ ENSG00000181409|ENST00000326724|AATK;ENST00000573441.1_1_17:79096339-79098810:-|nuORF;nc|ENSG00000181409|Q6ZMQ8-3|AATK 10.183394434864962 0.5188676124868831 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 7 6 35.96 0 0 3.2036 0 0 0 161.01636750416313 161.01636750416313 9.29006936454357 0 0 0 0 0 1.3979400086720375 0.3252574989159953 0.2742275032520141 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}Y 3.2036 - 361 NaN NaN 153418.5 NaN 18628 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23013 92.196 NaN 446260 35 0 75627 0.261 -1 YILEMYCEE 9 74 604.7467994027919 1207.4790458723837 2 604.7472534179688 MULTI HCD FTMS 0 0 0 23005 57454.27734375 0.6951525566477947 1 -0.0327606201171875 8 Oxidation (M) _YILEM(Oxidation (M))YCEE_ ENSG00000177192|ENST00000376649|PUS1;ENST00000543754.1_1_12:132425763-132428128:+|nuORF;nc|ENSG00000177192|Q9Y606-2|PUS1 5.230669730166228 0.3113646817964458 2 [Y{I|L}]GEY{I|L}AH{M(Oxidation (M))|F} 9 -1 39.536 0 0 3.2742 0 0 0 110.95262423321188 110.95262423321188 20.39640262352169 0 0 0 0 0 2 0 0 [Y{I|L}]GEY{I|L}AH{M(Oxidation (M))|F} 3.2742 - 606 NaN NaN 170295.7 NaN 18629 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23014 92.2 NaN 316650 35 0 19483 0.261 + 28736 TSVSFSFLCVI 11 71 601.8081466466397 1201.6017403600792 2 601.7960815429688 MULTI HCD FTMS 0 0 0 23005 58131.84765625 0.47875064018921293 3 -0.09532928466796875 9 Unmodified _TSVSFSFLCVI_ nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 8.745405648335112 0.3805662881914433 2 SHMNCV{I|L} 7 7 29.409 0 0 2.4475 0 0 399.21434218574376 0 399.21434218574376 0 11.449879211710083 0 0 0 0.25 0 0.5796896906561032 0 SHMNCV{I|L} 2.4475 - 640 NaN NaN 143520 NaN 18630 4382 23005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23016 92.205 NaN 1707800 35 0 230510 0.327 + 619 APFTEGISFVL 11 101 590.816319596517 NaN 0 590.805419921875 PEAK HCD FTMS 0 0 0 23015 318392.96875 0.4592890797426539 3 -0.0854034423828125 1 Unmodified _APFTEGISFVL_ ENSG00000128335|ENST00000358502|APOL2 92.65332237495696 1.1378468318156195E-06 2 VC{I|L}STET{M(Oxidation (M))|F} 8 9 54.215 0 0 4.596 0 0 131.09385271877983 165.06650720767814 296.160359926458 0 0 0 0 0 1.5021934810768762 0 1.1549471895720984 0 VC{I|L}STET{M(Oxidation (M))|F} 4.596 - 4597 + NaN NaN 346157.7 NaN 18631 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23017 92.209 NaN 478040 35 0 96433 0.261 -1 0 90 633.3543917641165 632.3471152975164 1 633.3693237304688 MULTI HCD FTMS 0 0 0 23015 54513.328125 0.7729574889809038 -5 0.1492919921875 2 NaN NaN 2 VM{I|L} 3 -1 9.6927 0 0 1.5328 0 0 271.14610488105626 0 271.14610488105626 0 3.1259189508755014 0 0 0 0 0 0 0 VM{I|L} 1.5328 - 28 NaN NaN 166098.1 NaN 18632 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23018 92.213 NaN 501420 35 0 64915 0.261 + 33629 YIVLAEFVF 9 71 550.8061339540758 NaN 0 550.795654296875 PEAK HCD FTMS 0 0 0 23015 6833.29345703125 0.37827001760501133 3 -0.0854034423828125 3 Unmodified _YIVLAEFVF_ REV__ENSG00000253729|ENST00000314191|PRKDC;REV__nc|ENSG00000253729|P78527-2|PRKDC 16.942295170755138 0.2079222001251384 2 S 1 -1 8.8515 0 0 0.80498 0 0 736.4188165979589 273.1234530084594 1009.5422696064184 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.80498 - 192 + NaN NaN 162963.8 NaN 18633 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23019 92.216 NaN 383200 35 0 61655 0.261 + -1 IYVFMFRCL 9 71 604.3039626530548 1206.5933723729095 2 604.304931640625 MULTI HCD FTMS 0 0 0 23015 98071.15625 0.8251364112350364 -3 0.1034393310546875 4 Oxidation (M) _IYVFM(Oxidation (M))FRCL_ REV__ENSG00000196689|ENST00000572705|TRPV1;REV__ENST00000574085.5_1_17:3470111-3495610:-|nuORF;REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 21.74664581756881 0.17247014374749275 2 {I|L}YV{M(Oxidation (M))|F}{I|L}CA 7 -1 78.677 0 0 6.5206 0 0 0 394.1742028097951 394.1742028097951 57.78273777167043 0 0 0 0 1.774227503252014 2 0 0 {I|L}YV{M(Oxidation (M))|F}{I|L}CA 6.5206 - 1482 + NaN NaN 151060 NaN 18634 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23020 92.219 NaN 130360 35 0 12649 0.264 + 23808 RRQTRVIQTGR 11 53 457.6080627048665 1369.8023587147995 3 457.6081237792969 MULTI HCD FTMS 0 0 0 23015 76486.265625 0.6243412453928868 -5 0.1492919921875 5 Unmodified _RRQTRVIQTGR_ UBR5|p.R162Q|1|0.24|ENSG00000104517|chr8:102346994-102346994|C/T|missense_variant 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 119785.6 NaN 18635 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23021 92.223 NaN 216360 35 0 27996 0.261 + 29232 TYLIVTSLL 9 53 511.81029377794874 1021.6060346226975 2 511.81011962890625 MULTI HCD FTMS 0 0 0 23015 55330.0546875 0.7971837948835012 -5 0.1492919921875 6 Unmodified _TYLIVTSLL_ ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-2|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1 36.12702656103203 0.08312389501731911 2 {I|L}VTS{I|L}{I|L} 6 3 41.089 0 0 4.022 0 0 377.195604392775 0 377.195604392775 0 27.276296993281406 0 0 0 1.8935078169319297 0 0.3252574989159953 0 + {I|L}VTS{I|L}{I|L} 4.022 + + 228 NaN NaN 117522.8 NaN 18636 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23022 92.226 NaN 89659 35 0 16156 0.261 -1 QFNCRKTIP 9 39 582.3028544340267 1162.5911559348533 2 582.3036499023438 MULTI HCD FTMS 0 0 0 23015 31117.552734375 0.21549915521860002 8 -0.2225494384765625 7 Carbamidomethyl (C) _QFNC(Carbamidomethyl (C))RKTIP_ ENSG00000204442|ENST00000375915|NALF1 7.289230182591677 0.29575926068275815 2 {I|L} 1 -1 6.9897 0 0 0.60122 0 0 676.2865122354377 370.20014368228755 1046.4866559177253 0 0 0 0 0 0 0 0 0 {I|L} 0.60122 + + 9 + NaN NaN 105008.4 NaN 18637 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23023 92.229 NaN 198140 35 0 19482 0.261 + 15126 LMLCWLSF 8 58 506.7530303597173 1011.4915077862346 2 506.7528076171875 MULTI HCD FTMS 0 0 0 23015 28195.076171875 0.022324312252011865 19 -0.5211868286132812 8 Unmodified _LMLCWLSF_ REV__ENSG00000138346|ENST00000358410|DNA2;REV__nc|ENSG00000138346|P51530-2|DNA2;REV__nc|ENSG00000138346|P51530-3|DNA2;REV__nc|ENSG00000138346|P51530-4|DNA2 15.768221252438446 0.4777766048089751 2 {M(Oxidation (M))|F}{[TV]|[{I|L}S]} 3 -1 18.71 0 0 1.8498 0 0 646.2967603197602 0 646.2967603197602 0 -3.3412188239621052 -3.3412188239621052 0 0 0.5 0 0.3252574989159953 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]} 1.8498 - 59 + NaN NaN 118790 NaN 18638 4383 23015 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23025 92.234 NaN 534560 35 0 42403 0.327 + 22675 QWPWQASLQF 10 74 645.8165663578968 1289.6185797825935 2 645.8168334960938 MULTI HCD FTMS 0 0 0 23024 199312.234375 0.8025697239668615 1 -0.03295135498046875 1 Unmodified _QWPWQASLQF_ ENSG00000160183|ENST00000644384|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENST00000476848.5_1_21:43803140-43803371:-|nuORF;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3 78.06048673739656 0.008034375046376557 2 QAS{I|L}Q{M(Oxidation (M))|F} 6 4 84.245 0 0 6.5326 0 0 597.2671375959 0 597.2671375959 0 68.10139432710997 0 0 0 2.4247425010840047 0 1.2302046884880937 0.6549471895720984 + QAS{I|L}Q{M(Oxidation (M))|F} 6.5326 + + 796 NaN NaN 179279 NaN 18639 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23026 92.239 NaN 140590 35 0 16517 0.264 -1 YMFQGAVH 8 51 484.71891771367376 967.4232824941475 2 484.7183837890625 MULTI HCD FTMS 0 0 0 23024 93535.625 0.6786193768398018 3 -0.08531951904296875 2 Oxidation (M) _YM(Oxidation (M))FQGAVH_ ENST00000515408.5_1_5:112351630-112351813:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}{I|L}R 3 -1 11.198 0 0 1.1575 0 0 59.03883532793504 523.0904635065061 582.1292988344412 0 0 0 0 0 0 0 0 0 {I|L}{I|L}R 1.1575 - 11 + NaN NaN 123817.4 NaN 18640 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23027 92.242 NaN 278840 35 0 14770 0.261 -1 0 71 451.93253336616567 1352.775770698697 3 451.93255615234375 MULTI HCD FTMS 0 0 0 23024 144955.765625 0.5152663695871634 -8 0.23795318603515625 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.594 0 0 0.85704 0 0 1187.7300381320938 0 1187.7300381320938 0 4.4897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.85704 - 15 + NaN NaN 128815.1 NaN 18641 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23028 92.246 NaN 404240 35 0 57654 0.261 + -1 IYVFMFRCL 9 69 604.3039626530548 1206.5933723729095 2 604.3045043945312 MULTI HCD FTMS 0 0 0 23024 108365.53125 0.9117496823354032 -2 0.0623779296875 4 Oxidation (M) _IYVFM(Oxidation (M))FRCL_ REV__ENSG00000196689|ENST00000572705|TRPV1;REV__ENST00000574085.5_1_17:3470111-3495610:-|nuORF;REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 21.74664581756881 0.17247014374749275 2 {I|L}YVA[YE]A 7 -1 71.515 0 0 5.927 0 0 0 394.17425189084486 394.17425189084486 64.52516653126573 0 0 0 0 2.1549471895720984 2 0 0 {I|L}YVA[YE]A 5.927 - 595 + NaN NaN 154953.6 NaN 18642 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23029 92.249 NaN 319210 35 0 88305 0.264 -1 0 38 405.1188912146128 808.2232294960256 2 405.1187438964844 MULTI HCD FTMS 0 0 0 23024 120047.0390625 0.6324391968535308 5 -0.14722442626953125 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.8069 0 0 643.1443548395788 0 643.1443548395788 0 11.382309020866222 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8069 - 8 + NaN NaN 139138 NaN 18643 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23030 92.252 NaN 330650 35 0 32858 0.261 + 172 AENMKSSLVCL 11 64 597.7954982099394 1193.5764434866787 2 597.7951049804688 MULTI HCD FTMS 0 0 0 23024 54046.734375 0.2505695419216104 8 -0.21918487548828125 6 Unmodified _AENMKSSLVCL_ ENSG00000180376|ENST00000394672|CCDC66;ENST00000422788.5_1_3:56595403-56599181:+|nuORF;ENST00000469966.1_1_3:56592935-56598176:+|nuORF;ENST00000472582.5_1_3:56591255-56599181:+|nuORF;nc|ENSG00000180376|A2RUB6-2|CCDC66;nc|ENSG00000180376|A2RUB6-3|CCDC66;nc|ENSG00000180376|A2RUB6-4|CCDC66 18.373094154950223 0.29699704000378496 2 {I|L}S 2 10 25.261 0 0 2.1164 0 0 333.17028728283566 657.2656954400999 990.4359827229355 0 0 0 0 0 1.3494850021680094 0 0.3807196863200844 0 {I|L}S 2.1164 - 122 + NaN NaN 136610.1 NaN 18644 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23031 92.256 NaN 402120 35 0 38480 0.261 -1 MTREAIDEF 9 67 564.2553629817457 NaN 0 564.2742919921875 PEAK HCD FTMS 0 0 0 23024 8100.43212890625 0.09183887641022684 12 -0.3307342529296875 7 Oxidation (M) _M(Oxidation (M))TREAIDEF_ ENSG00000166377|ENST00000426216|ATP9B;ENST00000490210.6_1_18:76873315-76936839:+|nuORF;ENST00000590271.5_1_18:76847676-76954399:+|nuORF;ENST00000590608.1_1_18:76886275-76903905:+|nuORF;nc|ENSG00000166377|O43861-2|ATP9B 21.74664581756881 0.17567436591797916 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}D 4 -1 13.761 0 0 1.2216 0 0 147.0165952996535 452.25175446557256 599.268349765226 0 0 0 0 0 0 0 0.5 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}D 1.2216 - 116 + NaN NaN 153354.3 NaN 18645 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23032 92.259 NaN 128900 35 0 20724 0.263 -1 0 45 441.7676007544397 881.5206485756794 2 441.76776123046875 MULTI HCD FTMS 0 0 0 23024 43185.703125 0.7845147266552097 -4 0.133056640625 8 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.79291 0 0 155.095663160009 610.3188861174799 765.414549277489 0 0 0 0 0 0 0 0 0 {I|L} 0.79291 - 6 + NaN NaN 108954.8 NaN 18646 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23033 92.262 NaN 178530 35 0 49799 0.261 + -1 LFCMWVLF 8 63 558.2760714448166 1114.537589956433 2 558.2767333984375 MULTI HCD FTMS 0 0 0 23024 33740.140625 0.7112933271483238 2 -0.0557861328125 9 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))MWVLF_ REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|103 11.114462752807354 0.5120171699125776 2 {[YD]|[{M(Oxidation (M))|F}M]}VK[EC]V{I|L}{M(Oxidation (M))|F} 9 -1 + 39.051 0 0 3.5038 3.5038 84.074 0 0 0 22.14001255353097 10.098812726971722 10.098812726971722 8.628268069746888 0 0 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}VK[EC]V{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}V{[SA]|[TG]}{[DS]|[MA]|[CV]|TT}V{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[DS]|[MA]|[CV]|TT}V{I|L}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}VVV{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{M(Oxidation (M))|F} 3.5038;2.7296;2.4137;2.2375 -;-;-;- 118 + NaN NaN 122090 NaN 18647 4384 23024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23035 92.267 NaN 2258700 35 0 401960 0.327 + 26868 SYIPLFPQL 9 78 539.3024992409976 1076.590445548795 2 539.3028564453125 MULTI HCD FTMS 0 0 0 23034 1386469.25 0.9663219066340881 1 -0.02283477783203125 1 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 96.11092074494114 0.00436583732602279 2 [Y{I|L}]SP{I|L}{M(Oxidation (M))|F}PQ{I|L} 9 2 + 66.516 0 0 6.1784 6.1784 84.507 0 0 0 0.6863623584101219 2.319393642848482 0.6863623584101219 0.6863623584101219 0 2.048455006504028 1.0457574905606752 0.6694451763165201 0.3807196863200844 [Y{I|L}]SP{I|L}{M(Oxidation (M))|F}PQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}PQ{I|L};[Y{I|L}]SP{M(Oxidation (M))|F}{I|L}PQ{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{M(Oxidation (M))|F}{I|L}PQ{I|L};[Y{I|L}]V[TP]{M(Oxidation (M))|F}PQ{I|L};[Y{I|L}]SP{I|L}[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}[{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]V[TP][{I|L}P]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 6.1784;6.1146;4.7965;4.7327;4.1779;3.1092;3.0454;1.1087 -;+;-;-;-;-;-;- + 1002 NaN NaN 443564.6 NaN 18648 4385 23034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23036 92.272 NaN 527160 35 0 132740 0.261 + 6496 FPIPGEPGFPL 11 67 585.8134525913252 1169.6123522494504 2 585.8134765625 MULTI HCD FTMS 0 0 0 23034 219684.4375 0.42304604014660585 10 -0.26824951171875 2 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 22.736283301280096 0.2589804299186601 2 M[PG][WP]EP{I|L} 8 6 37.625 0 0 3.2168 0 0 244.17813307929845 0 244.17813307929845 0 14.769987279362624 0 0 0 1.8494850021680094 0 0 0 M[PG][WP]EP{I|L} 3.2168 - 471 NaN NaN 175117.3 NaN 18649 4385 23034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23037 92.275 NaN 222280 35 0 25512 0.261 + 14687 LGYLSHMSSSI 11 53 597.7954982099394 1193.5764434866787 2 597.7943115234375 MULTI HCD FTMS 0 0 0 23034 43437.015625 0.20138114232915824 9 -0.23207855224609375 3 Unmodified _LGYLSHMSSSI_ REV__ENSG00000141232|ENST00000499247|TOB1 17.11289562659939 0.30797719109864646 2 S{I|L}[PA]{M(Oxidation (M))|F} 5 -1 32.747 0 0 2.7436 0 0 660.2867909162125 0 660.2867909162125 0 21.778259348524358 0 0 0 1.274227503252014 0 0.3807196863200844 0 S{I|L}[PA]{M(Oxidation (M))|F} 2.7436 - 74 NaN NaN 134399 NaN 18650 4385 23034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23038 92.278 NaN 409240 35 0 70693 0.261 + 13813 KYPSPFFVF 9 64 566.2974339066556 1130.580314880111 2 566.2979736328125 MULTI HCD FTMS 0 0 0 23034 27957.9375 0.12276057123443082 -17 0.4840545654296875 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.13340543277302316 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 31.682 0 0 2.8023 0 0 719.3698597638687 0 719.3698597638687 0 -3.645162531850879 -3.645162531850879 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.8023 + + 697 NaN NaN 152597.9 NaN 18651 4385 23034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23039 92.282 NaN 145340 35 0 28239 0.261 + 953 AYEIIDQFF 9 52 573.2792684956456 1144.5439840580912 2 573.2791137695312 MULTI HCD FTMS 0 0 0 23034 38727.03515625 0.014886715609097505 21 -0.5702972412109375 5 Unmodified _AYEIIDQFF_ ENSG00000186432|ENST00000334256|KPNA4 22.736283301280096 0.1639198954644489 2 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 37.263 0 0 3.2557 0 0 476.2284107892594 0 476.2284107892594 0 19.78855930516417 0 0 0 0.9247425010840047 0 0.4247425010840047 0.3054621874040891 + {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.2557 + + 23 NaN NaN 108913 NaN 18652 4385 23034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23040 92.285 NaN 161890 35 0 43194 0.261 -1 IPPNSKDMTP 10 56 558.2760714448166 1114.537589956433 2 558.27685546875 MULTI HCD FTMS 0 0 0 23034 42613.24609375 0.8983518454026524 3 -0.084686279296875 6 Oxidation (M) _IPPNSKDM(Oxidation (M))TP_ ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP 9.38312468134398 0.42334543440173333 2 {[YD]|[{M(Oxidation (M))|F}M]}VK[EC]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 -1 + 16.602 0 0 1.4895 1.4895 80.972 0 0 0 3.925449767853314 5.174837133936311 3.925449767853314 3.0102999566398108 0 0 0 0 0 {[YD]|[{M(Oxidation (M))|F}M]}VK[EC]V{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}VKM{[CP]|[EA]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.4895;1.2194 -;- 62 + NaN NaN 124725 NaN 18653 4385 23034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23042 92.29 NaN 2203500 35 0 517090 0.327 + 10922 IYADYIAPLF 10 80 593.3128754391342 1184.6111979450684 2 593.3129272460938 MULTI HCD FTMS 0 0 0 23041 800882.3125 0.9281428837354838 2 -0.06185150146484375 1 Unmodified _IYADYIAPLF_ ENSG00000084073|ENST00000372759|ZMPSTE24 78.14939416004806 0.007929027632678966 2 PA{I|L}CKDN{M(Oxidation (M))|F} 8 8 58.754 0 0 4.9597 0 0 278.16243178535314 0 278.16243178535314 0 32.629106573952456 0 0 0 1.805462187404089 0 0 0 PA{I|L}CKDN{M(Oxidation (M))|F} 4.9597 - 1318 NaN NaN 416775.2 NaN 18654 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23043 92.294 NaN 583180 35 0 144520 0.261 -1 0 82 633.3543917641165 632.3471152975164 1 633.3690795898438 MULTI HCD FTMS 0 0 0 23041 58486.41796875 0.8292928780453653 -2 0.0557861328125 2 NaN NaN 2 V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 3 -1 8.072 0 0 1.2765 0 0 271.1461659162125 0 271.1461659162125 0 0.6246936830414995 0 0 0 0 0 0 0 V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 1.2765 - 12 NaN NaN 179947.8 NaN 18655 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23044 92.298 NaN 487860 35 0 141660 0.262 + -1 DLPELFMAI 9 66 532.7702772811564 1063.5260016291127 2 532.7859497070312 MULTI HCD FTMS 0 0 0 23041 47506.6796875 0.48652588789891416 -10 0.29373931884765625 3 Oxidation (M) _DLPELFM(Oxidation (M))AI_ REV__ENSG00000166192|ENST00000340912|SENP8 14.838274106304384 0.23215694253501695 2 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 8 -1 57.134 0 0 5.3721 0 0 113.05467785095762 0 113.05467785095762 0 0.5448100978261294 0 0 0 0.6549471895720984 0 0.75 0 PED{I|L}{I|L}{M(Oxidation (M))|F}A{M(Oxidation (M))|F} 5.3721 - 511 + NaN NaN 167206.8 NaN 18656 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23045 92.301 NaN 256080 35 0 14539 0.262 -1 0 70 437.25721486719715 1308.7498152017915 3 437.2573547363281 MULTI HCD FTMS 0 0 0 23041 146297.578125 0.32848960552738377 -17 0.4840545654296875 4 NaN NaN 2 S 1 -1 9.732 0 0 0.74361 0 0 414.2464498756412 804.4317110650999 1218.678160940741 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.74361 - 7 + NaN NaN 130533.3 NaN 18657 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23046 92.305 NaN 131660 35 0 7070.7 0.261 -1 0 53 422.5819131158917 1264.7239099478752 3 422.58184814453125 MULTI HCD FTMS 0 0 0 23041 95743.453125 0.22530861632738758 38 -0.9528274536132812 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 110550.2 NaN 18658 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23047 92.308 NaN 354100 35 0 48609 0.261 + 6247 FPEVYVPTVF 10 59 599.3132001202131 1196.611847307226 2 599.3134765625 MULTI HCD FTMS 0 0 0 23041 91168.921875 0.5415269996845399 -2 0.0557861328125 6 Unmodified _FPEVYVPTVF_ ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC;ENST00000478447.1_1_1:113246211-113247744:-|nuORF;RHOA|p.E40Q|3|0.18|ENSG00000067560|chr3:49375472-49375472|C/G|missense_variant 29.081581746732265 0.240155558137004 2 V{[QG]|[NA]}DAV{M(Oxidation (M))|F} 7 7 53.945 0 0 4.5081 0 0 462.24752483804485 0 462.24752483804485 0 40.13251345633968 0 0 0 1.5 0 0.8494850021680094 0.3494850021680094 V{[QG]|[NA]}DAV{M(Oxidation (M))|F} 4.5081 - 241 NaN NaN 139727.2 NaN 18659 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23048 92.311 NaN 207570 35 0 29049 0.261 + 4386 EYAAGPFALF 10 59 543.2684982845105 1084.522443635821 2 543.2691040039062 MULTI HCD FTMS 0 0 0 23041 70031.546875 0.7441009250254258 2 -0.06185150146484375 7 Unmodified _EYAAGPFALF_ ENSG00000198888|ENST00000361390|MT-ND1 54.773552608820026 0.0604291769046433 2 A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L}{M(Oxidation (M))|F} 6 7 37.976 0 0 3.5016 0 0 363.14098719226473 0 363.14098719226473 0 34.877203139966326 0 0 0 1.805462187404089 0 0 0 A{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}{I|L}{M(Oxidation (M))|F} 3.5016 - 43 + NaN NaN 121018.7 NaN 18660 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23049 92.315 NaN 102100 35 0 12703 0.261 + 5690 FPAGFVLQL 9 43 496.2842212810929 990.5538896289859 2 496.2847900390625 MULTI HCD FTMS 0 0 0 23041 20596.41015625 0.16043122554781922 7 -0.189666748046875 8 Unmodified _FPAGFVLQL_ ENSG00000168005|ENST00000294244|SPINDOC 23.1484247019978 0.1603590852062899 2 V{I|L}Q{I|L} 4 5 36.67 0 0 3.702 0 0 519.2469349591812 0 519.2469349591812 0 21.18562527100117 0 0 0 0.7742275032520141 0 0 0 + V{I|L}Q{I|L} 3.702 + + 25 NaN NaN 118308.5 NaN 18661 4386 23041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23051 92.32 NaN 2149000 35 0 513340 0.327 + 10498 IPEDLPFVL 9 60 521.7944764957672 1041.5744000583343 2 521.7947998046875 MULTI HCD FTMS 0 0 0 23050 1534298.375 0.8098723320136979 4 -0.10761260986328125 1 Unmodified _IPEDLPFVL_ ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant 44.40701690623563 0.04511410083598184 2 P{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.4342 0 0 567.2899318678491 0 567.2899318678491 0 22.36317506954599 0 0 0 1.4247425010840047 0 0 0 + P{M(Oxidation (M))|F}V{I|L} 4.4342 + + 237 NaN NaN 415421 NaN 18662 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23052 92.324 NaN 2473000 35 0 502420 0.261 + 20257 NYLPFIMEL 9 83 578.2912552508974 1154.5679575685947 2 578.291748046875 MULTI HCD FTMS 0 0 0 23050 1149283.125 0.6869637919846323 8 -0.21588134765625 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 166.44778350782605 5.759113011535275E-09 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 108.6 0 0 9.4063 9.4063 96.999 0 0 0 24.718091130107624 16.478174818886373 16.478174818886373 24.718091130107624 0 2.548455006504028 1.2218487496163564 0 2.1056270500406935 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[YN]{I|L}P{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{[QN]|[E{I|L}]|[KN]}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L};{[QN]|[E{I|L}]|[KN]}MPY{I|L}[YN]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}PY{I|L}[YN]{I|L};[MT]V[{I|L}T][WY]E{I|L} 9.4063;7.2654;5.1762;4.9155;4.5586;4.2975;2.1676;1.3942;1.2417;0.50553 +;-;-;-;-;-;-;-;-;- + 1059 NaN NaN 468623.2 NaN 18663 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23053 92.334 NaN 149150 35 0 15754 0.261 -1 LPMFELVEL 9 53 553.7939794020258 NaN 0 553.7938232421875 PEAK HCD FTMS 0 0 0 23050 31531.853515625 0.1378375024623126 19 -0.5179290771484375 3 Oxidation (M) _LPM(Oxidation (M))FELVEL_ ENSG00000168397|ENST00000404914|ATG4B;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;nc|ENSG00000168397|Q9Y4P1-6|ATG4B 24.020572477871973 0.16041128140741606 2 EV{I|L} 3 -1 21.995 0 0 1.9894 0 0 131.0843433468205 630.2594698541624 761.3438132009828 0 0 0 0 0 1.2302046884880937 0 0 0 EV{I|L} 1.9894 - 61 + NaN NaN 108842.6 NaN 18664 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23054 92.337 NaN 102380 35 0 12387 0.261 + 8103 GLAGWWRF 8 37 496.75967697378167 991.5048010143634 2 496.7598876953125 MULTI HCD FTMS 0 0 0 23050 20557.119140625 0.15937903738210768 5 -0.1338653564453125 4 Unmodified _GLAGWWRF_ ENST00000263563.6_1_10:72327056-72327413:+|nuORF 5.760428011301431 0.5334459684533844 2 V{I|L}QN 4 7 30.433 0 0 3.0694 0 0 519.2494374005875 0 519.2494374005875 0 8.443350238481031 0 0 0 0 0 0 0 V{I|L}QN 3.0694 - 14 NaN NaN 111476.4 NaN 18665 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23055 92.34 NaN 188550 35 0 44310 0.261 + -1 EYYEIMDFL 9 52 619.768692125191 1237.522831317182 2 619.7687377929688 MULTI HCD FTMS 0 0 0 23050 57019.40625 1 0 0 5 Oxidation (M) _EYYEIM(Oxidation (M))DFL_ REV__ENSG00000104866|ENST00000221462|PPP1R37 4.3292370932331545 0.3181982124262546 2 WD 2 -1 11.594 0 0 0.93685 0 0 918.3904253922955 0 918.3904253922955 0 1.4165061435177488 0 0 0 0 0 0 0 WD 0.93685 - 18 NaN NaN 116334 NaN 18666 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23056 92.344 NaN 47103 35 0 5389.1 0.264 + -1 YGTVELVL 8 26 468.2578105547329 934.5010681762658 2 468.2576599121094 MULTI HCD FTMS 0 0 0 23050 19894.265625 0.04501242900526878 12 -0.3308258056640625 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YGTVELVL_ REV__ENST00000379160.3_1_20:5107224-5107266:-|nuORF 2.302733041254933 0.5385759549224092 2 V{I|L} 2 -1 20.969 0 0 2.2439 0 0 704.3349476544937 0 704.3349476544937 0 20.969100130080562 0 0 0 0 0 0 0 V{I|L} 2.2439 + + 1 NaN NaN 102994.5 NaN 18667 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23057 92.347 NaN 47731 35 0 5463.6 0.261 + 18026 MLLPLLWA 8 43 478.7850999850778 955.5556470369556 2 478.78558349609375 MULTI HCD FTMS 0 0 0 23050 14485.828125 0.5384238612835199 2 -0.0619049072265625 7 Unmodified _MLLPLLWA_ nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 2.8892196856762586 0.5377058178582064 2 P 1 7 1.5938 0 0 0.16679 0 0 530.3153343922276 325.15696130924067 855.4722957014683 0 0 0 0 0 0 0 0 0 + P 0.16679 + + 3 + NaN NaN 115519.6 NaN 18668 4387 23050 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23059 92.352 NaN 134550 35 0 8496.1 0.327 -1 0 72 641.8826105638228 1281.7506681944456 2 641.88232421875 MULTI HCD FTMS 0 0 0 23058 171391.390625 0.1038634591253806 39 -0.9563827514648438 1 NaN NaN 2 A 1 -1 6.0257 0 0 0.47011 0 0 149.10293725108528 1058.5923555963502 1207.6952928474354 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.47011 - 7 + NaN NaN 110384.4 NaN 18669 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23060 92.356 NaN 398080 35 0 57521 0.263 + -1 IEVYCFLI 8 59 528.7749143837757 1055.5352758343513 2 528.78466796875 MULTI HCD FTMS 0 0 0 23058 43028.9765625 0.022875401686363366 42 -1.0451431274414062 2 Carbamidomethyl (C) _IEVYC(Carbamidomethyl (C))FLI_ REV__ENSG00000173578|ENST00000309285|XCR1 18.13498045792455 0.4603629008820478 2 EY{M(Oxidation (M))|F}{I|L}S 5 -1 44.826 0 0 4.2467 0 0 131.08073581627963 282.14573084049067 413.2264666567703 0 0 0 0 0 0.805462187404089 0 1.8098943791441968 0 EY{M(Oxidation (M))|F}{I|L}S 4.2467 - 181 + NaN NaN 160741.5 NaN 18670 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23061 92.36 NaN 190790 35 0 28742 0.261 + 21176 PPTLSLALSL 10 52 506.3073688783108 1010.6001848234216 2 506.3078308105469 MULTI HCD FTMS 0 0 0 23058 87832.8125 1 0 0 3 Unmodified _PPTLSLALSL_ ENST00000505912.1_1_4:113332098-113335446:+|nuORF 22.736283301280096 0.29844449404982915 2 M{I|L}S{I|L} 4 7 41.542 0 0 4.1107 0 0 548.3343983380875 0 548.3343983380875 0 21.938200260161125 0 0 0 0.8807196863200843 0 0.3807196863200844 0 M{I|L}S{I|L} 4.1107 - 49 NaN NaN 115114.2 NaN 18671 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23062 92.363 NaN 96669 35 0 24248 0.261 + 7217 FSRKSSLTCHH 11 36 434.88228203144405 NaN 0 434.8825378417969 PEAK HCD FTMS 0 0 0 23058 53704.26953125 0.5425768520368259 -17 0.49010467529296875 4 Unmodified _FSRKSSLTCHH_ ENSG00000198346|ENST00000396403|ZNF813 1.214830529360525 0.33867401910978034 2 Q 1 11 0.48455 0 0 0.05584 0 0 415.79186401230373 320.88227258853755 736.6741366008413 0 0 0 0 0 0 0 0 0 Q 0.05584 - 1 + NaN NaN 106093.8 NaN 18672 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23063 92.367 NaN 216110 35 0 44247 0.261 + 21402 PVMFEDFSF 9 51 559.7471252750007 NaN 0 559.765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PVMFEDFSF_ REV__nc|ENSG00000225830|P0DP91|ERCC6 12.531546534597751 0.23452071659215576 2 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S 7 -1 29.469 0 0 2.6371 0 0 165.040163856015 162.05597864322502 327.09614249924005 0 0 0 0 0 0 0 0.7742275032520141 0 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S 2.6371 - 63 + NaN NaN 128385.8 NaN 18673 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23064 92.37 NaN 211790 35 0 23350 0.261 + 31409 VYALYIVAL 9 56 512.8072021978414 1023.5998514624829 2 512.8079223632812 MULTI HCD FTMS 0 0 0 23058 103496.7109375 1 0 0 6 Unmodified _VYALYIVAL_ ENSG00000164251|ENST00000296677|F2RL1;nc|ENSG00000164251|P55085|F2RL1 45.7499826716795 0.03894913563566938 2 Y{I|L}VA{I|L} 5 4 48.36 0 0 4.7245 0 0 446.25276381660314 0 446.25276381660314 0 26.052659518797938 0 0 0 1.8807196863200843 0 0 0 + Y{I|L}VA{I|L} 4.7245 + + 231 NaN NaN 123849.5 NaN 18674 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23065 92.373 NaN 31458 35 0 4101 0.261 + 19148 NGLALHLMA 9 17 470.25741783621004 NaN 0 470.27215576171875 PEAK HCD FTMS 0 0 0 23058 12662.7578125 1 0 0 7 Unmodified _NGLALHLMA_ ENSG00000163064|ENST00000295206|EN1 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89677.1 NaN 18675 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23066 92.377 NaN 80267 35 0 5774.6 0.261 -1 0 51 473.3736747654179 NaN 0 473.7841491699219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 V 1 -1 6.9897 0 0 0.73986 0 0 330.35341534939204 512.2874849908811 842.6409003402732 0 0 0 0 0 0 0 0 0 V 0.73986 - 6 + NaN NaN 95405.3 NaN 18676 4388 23058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23068 92.381 NaN 343050 35 0 17393 0.327 -1 0 82 451.93253336616567 1352.775770698697 3 451.9326477050781 MULTI HCD FTMS 0 0 0 23067 275169.1875 0.9781289323266578 -3 0.09143829345703125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.783 0 0 0.871 0 0 1187.7299618381485 0 1187.7299618381485 0 4.793036574208873 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.871 - 43 + NaN NaN 141591.8 NaN 18677 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23069 92.386 NaN 206330 35 0 10917 0.261 + 29833 VERRRLERRT 10 67 457.6080627048665 1369.8023587147995 3 457.60821533203125 MULTI HCD FTMS 0 0 0 23067 101023.1953125 0.8246310244013184 1 -0.02617645263671875 2 Unmodified _VERRRLERRT_ ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant 1.5922808571145555 0.4668755089467872 2 T 1 9 3.0989 0 0 0.22623 0 0 693.4094276618683 572.3160494440061 1265.7254771058745 0 0 0 0 0 0 0 0 0 + T 0.22623 + + 26 + NaN NaN 122463.6 NaN 18678 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23070 92.389 NaN 256360 35 0 41348 0.261 -1 SYLITRSIM 9 53 550.2937911648693 1098.5730293965385 2 550.294189453125 MULTI HCD FTMS 0 0 0 23067 49221.80859375 0.3134145789412419 6 -0.1539764404296875 3 Oxidation (M) _SYLITRSIM(Oxidation (M))_ ENSG00000065809|ENST00000181796|FAM107B;ENST00000471815.5_1_10:14572088-14646275:-|nuORF 13.90604991867851 0.24021115267848145 2 K{M(Oxidation (M))|F}[{I|L}P][MT]{I|L} 7 -1 25.704 0 0 2.3398 0 0 250.09509474922032 0 250.09509474922032 0 2.5438696215375245 0 0 0 1.4247425010840047 0 0 0.3252574989159953 K{M(Oxidation (M))|F}[{I|L}P][MT]{I|L} 2.3398 - 135 NaN NaN 126888.4 NaN 18679 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23071 92.393 NaN 193100 35 0 28593 0.261 + 6948 FPVNQLFDML 10 58 620.307614273246 1238.600675613292 2 620.3078002929688 MULTI HCD FTMS 0 0 0 23067 35286.734375 0.11074569404494576 22 -0.6005783081054688 4 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 55.50274090549119 0.0577772802216 2 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 5 5 48.488 0 0 3.9147 0 0 585.288377830275 0 585.288377830275 0 43.081597033474424 0 0 0 1.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.9147 + + 49 NaN NaN 111578.4 NaN 18680 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23072 92.396 NaN 322260 35 0 93800 0.262 + 15404 LPDIALDVF 9 55 501.778948558952 1001.543344184704 2 501.77899169921875 MULTI HCD FTMS 0 0 0 23067 75793.1640625 0.09164355911663602 -7 0.20960235595703125 5 Unmodified _LPDIALDVF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 46.020951573049366 0.037705236580089195 2 A{I|L}DV{M(Oxidation (M))|F} 5 4 62.206 0 0 6.211 0 0 438.247362205275 0 438.247362205275 0 32.28470012691339 0 0 0 2 0 0.4247425010840047 0 + A{I|L}DV{M(Oxidation (M))|F} 6.211 + + 87 NaN NaN 135753.2 NaN 18681 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23073 92.399 NaN 134430 35 0 13421 0.261 + 22541 QSELSHCLTF 10 43 582.7705951390435 1163.526637344887 2 582.77099609375 MULTI HCD FTMS 0 0 0 23067 37946.984375 0.15437633659004213 -4 0.1142730712890625 6 Unmodified _QSELSHCLTF_ REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;REV__ENSG00000107099|ENST00000432829|DOCK8;REV__nc|ENSG00000107099|Q8NF50-2|DOCK8;REV__nc|ENSG00000107099|Q8NF50-3|DOCK8;REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 20.41453444215458 0.3201613495159799 2 NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[YT]T{M(Oxidation (M))|F} 9 -1 + 61.577 0 0 5.2923 5.2923 89.018 0 0 0 54.5872875024979 16.478174818886373 16.478174818886373 12.703037561203843 0 1 0 0 0.3494850021680094 NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[YT]T{M(Oxidation (M))|F};NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}[YT]T{M(Oxidation (M))|F} 5.2923;4.2005 -;- 71 + NaN NaN 103496.2 NaN 18682 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23074 92.403 NaN 115040 35 0 11063 0.261 + 23295 RHRLQRRQ 8 66 575.3453526359716 1148.6761523387431 2 575.3455810546875 MULTI HCD FTMS 0 0 0 23067 69580.6015625 0.18175084441954978 -8 0.24414825439453125 7 Unmodified _RHRLQRRQ_ nc|ENSG00000132821|Q96N03-3|VSTM2L 4.75600775471527 0.5349361699807423 2 S[{M(Oxidation (M))|F}V] 3 8 9.1947 0 0 0.80046 0 0 797.473436424025 0 797.473436424025 0 3.6882150839979406 0 0 0 0.3252574989159953 0 0 0 S[{M(Oxidation (M))|F}V] 0.80046 - 40 NaN NaN 116078.1 NaN 18683 4389 23067 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23076 92.408 NaN 1381400 35 0 236340 0.327 + 26869 SYIPLFPQL 9 59 539.3024992409976 1076.590445548795 2 539.3029174804688 MULTI HCD FTMS 0 0 0 23075 565162.625 0.39389912567359586 6 -0.1573333740234375 1 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 53.832793166522166 0.026208976789938845 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 54.472 0 0 5.0597 5.0597 87.928 0 0 0 9.771212547196626 11.962724883926654 9.771212547196626 9.771212547196626 0 2 0 0.7059771852360797 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}{M(Oxidation (M))|F}[QP]{I|L};[Y{I|L}]SP{I|L}{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}Q[{I|L}P]{M(Oxidation (M))|F};[Y{I|L}]V[TP]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}P{I|L}[{I|L}P]Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}PQ{I|L}[{I|L}P]{M(Oxidation (M))|F};[Y{I|L}]SP{I|L}[{I|L}P]Q{M(Oxidation (M))|F};[Y{I|L}]V[TP][{I|L}P]Q{M(Oxidation (M))|F} 5.0597;4.1521;3.0347;2.847;2.7547;2.2907;1.8471;0.54203 +;-;-;-;-;-;-;- + 306 NaN NaN 313076.7 NaN 18684 4390 23075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23077 92.412 NaN 331600 35 0 68017 0.261 + 6497 FPIPGEPGFPL 11 64 585.8134525913252 1169.6123522494504 2 585.8133544921875 MULTI HCD FTMS 0 0 0 23075 141168.6875 0.27184836085427605 15 -0.4102020263671875 2 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 22.736283301280096 0.2589804299186601 2 M[PG][WP]EP{I|L} 8 6 35.623 0 0 3.0457 0 0 244.17823989082189 0 244.17823989082189 0 21.81031895404267 0 0 0 1.774227503252014 0 0 0 M[PG][WP]EP{I|L} 3.0457 - 511 NaN NaN 140105.1 NaN 18685 4390 23075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23078 92.416 NaN 754650 35 0 131160 0.261 + 3947 EQELIYFTF 9 63 595.2922694180716 1188.569985902943 2 595.2923583984375 MULTI HCD FTMS 0 0 0 23075 287879.9375 0.8513131177967226 -3 0.08808135986328125 3 Unmodified _EQELIYFTF_ ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5 63.960520009940105 0.0120409805053046 2 {I|L}Y{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 5 4 52.886 0 0 4.4496 0 0 499.22563883438676 0 499.22563883438676 0 31.917052668148933 0 0 0 2.1989700043360187 0 1.6203715150305282 0 + {I|L}Y{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 4.4496 + + 373 + NaN NaN 206836.3 NaN 18686 4390 23075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23079 92.419 NaN 597720 35 0 112500 0.261 -1 MPPWENIWL 9 70 601.2890662512833 1200.5635795693665 2 601.2891235351562 MULTI HCD FTMS 0 0 0 23075 165407.953125 0.3493307181427756 -6 0.17340087890625 4 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 32.78568957990786 0.09846250359632436 2 EN{I|L}W{I|L} 5 -1 54.865 0 0 4.5699 0 0 527.2192249982437 0 527.2192249982437 0 46.37009080640347 0 0 0 1.6861818737241734 0 0 0.3054621874040891 EN{I|L}W{I|L} 4.5699 + + 269 NaN NaN 187506.2 NaN 18687 4390 23075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23080 92.422 NaN 138270 35 0 20483 0.261 + 743 ARRRLEIEVP 10 51 619.8693815573286 1237.724210181457 2 619.8698120117188 MULTI HCD FTMS 0 0 0 23075 45014.6015625 0.7268686180332736 -2 0.05576324462890625 5 Unmodified _ARRRLEIEVP_ ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2 1.4819007175156935 0.4674597685733628 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 9 15.037 0 0 1.2149 0 0 130.217326491807 582.2683809869749 712.4857074787819 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 1.2149 - 29 + NaN NaN 122059 NaN 18688 4390 23075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23082 92.427 NaN 1862100 35 0 274460 0.327 + 19400 NPFQFEITF 9 96 571.7800130412154 1141.5454731492307 2 571.77978515625 MULTI HCD FTMS 0 0 0 23081 787058.625 0.4691212187183305 -2 0.04570770263671875 1 Unmodified _NPFQFEITF_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 155.02607137521346 3.513045939247001E-06 2 [NP]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 9 0 + 85.185 0 0 7.4622 7.4622 91.141 0 0 0 0.49946942621133417 31.64363917149508 0.49946942621133417 9.208187539523749 0 2.6747425010840047 0 1.0629529932484498 1.2783773187068794 + + [NP]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F};[NP]{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][HT]{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}QPN{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}QT{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}[HT]T{M(Oxidation (M))|F};[NP]{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}[{I|L}T]E{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}QPGG{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}PN;[{M(Oxidation (M))|F}T]{I|L}E{M(Oxidation (M))|F}QPN{M(Oxidation (M))|F} 7.4622;6.6556;5.7824;3.992;3.8099;3.7015;3.6605;3.1853;3.1819;3.1309 +;-;-;-;-;-;-;-;-;- + 1200 NaN NaN 385763.3 NaN 18689 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23083 92.432 NaN 217490 35 0 46820 0.264 + -1 LCKCGASG 8 44 419.1834313272922 836.3523097213845 2 419.18341064453125 MULTI HCD FTMS 0 0 0 23081 280778.625 0.5090695108195705 -5 0.13714599609375 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))KCGASG_ REV__ENST00000547035.5_1_12:53887565-53887598:-|nuORF 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 1.4915 0 0 671.2742895571251 0 671.2742895571251 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4915 - 4 + NaN NaN 120972.1 NaN 18690 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23084 92.435 NaN 337960 35 0 71440 0.261 + -1 DLPELFMAI 9 59 532.7702772811564 1063.5260016291127 2 532.785888671875 MULTI HCD FTMS 0 0 0 23081 45119.20703125 0.46207527881494476 -5 0.13714599609375 3 Oxidation (M) _DLPELFM(Oxidation (M))AI_ REV__ENSG00000166192|ENST00000340912|SENP8 10.823927491677226 0.26684000660059787 2 PED{I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8 -1 48.34 0 0 4.5453 0 0 113.0547380717954 0 113.0547380717954 0 22.371250542002343 0 0 0 0.3494850021680094 0 0 0 PED{I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5453 - 286 + NaN NaN 159669.2 NaN 18691 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23085 92.439 NaN 277520 35 0 35675 0.261 + 10843 IVDEILTVM 9 43 516.7845482247269 1031.5545435162537 2 516.7938232421875 MULTI HCD FTMS 0 0 0 23081 6581.6376953125 0.10350964445044857 11 -0.29863739013671875 4 Unmodified _IVDEILTVM_ REV__ENSG00000149054|ENST00000278319|ZNF215;REV__nc|ENSG00000149054|Q9UL58-2|ZNF215 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F}{I|L}PS{M(Oxidation (M))|F} 5 -1 37.964 0 0 3.6803 0 0 422.2718179964991 0 422.2718179964991 0 17.0217596488785 0 0 0 1.2302046884880937 0 0 0 {M(Oxidation (M))|F}{I|L}PS{M(Oxidation (M))|F} 3.6803 - 65 + NaN NaN 134022.8 NaN 18692 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23086 92.442 NaN 268230 35 0 74194 0.262 -1 0 37 405.1188912146128 808.2232294960256 2 405.1190185546875 MULTI HCD FTMS 0 0 0 23081 83880.6953125 0.4419054396446558 12 -0.33150482177734375 5 NaN NaN 2 V 1 -1 0.48455 0 0 0.059953 0 0 422.05380918528186 284.07456384830317 706.128373033585 0 0 0 0 0 0 0 0 0 V 0.059953 - 4 + NaN NaN 133967.1 NaN 18693 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23087 92.445 NaN 571180 35 0 74500 0.261 + 11450 IYQEVWNLF 9 74 606.30825604803 1210.6019591628599 2 606.3085327148438 MULTI HCD FTMS 0 0 0 23081 109702.859375 0.1235264582667111 -5 0.13714599609375 6 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 59.368380827593164 0.01846506874148156 2 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F} 10 2 + 83.409 0 0 6.8899 6.8899 86.85 0 0 0 16.478174818886373 58.34752853788089 16.478174818886373 3.2795501485934864 0 2.6549471895720984 1.2218487496163564 0 0.3494850021680094 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]G[W{I|L}]{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]G{[QD]|[EN]|[WG]|[KD]|[RS]}{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WY]{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWGG{I|L}{M(Oxidation (M))|F} 6.8899;6.619;5.8584;5.8442;4.9032;4.5349;4.1161;4.0549;3.9517;3.7779 -;+;-;-;-;-;-;-;-;- + 594 NaN NaN 198227.6 NaN 18694 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23088 92.449 NaN 101690 35 0 9783.3 0.261 + 222 AEYFELPEL 9 44 555.7715978651405 1109.528642797081 2 555.77197265625 MULTI HCD FTMS 0 0 0 23081 28487.4296875 0.5230431680222231 3 -0.0720977783203125 7 Unmodified _AEYFELPEL_ ENSG00000178695|ENST00000377474|KCTD12 11.640296217721598 0.25978676193971967 2 EE{I|L} 3 6 26.995 0 0 2.433 0 0 720.3481922834 0 720.3481922834 0 21.510234424404686 0 0 0 0.3807196863200844 0 0 0 EE{I|L} 2.433 - 31 NaN NaN 108872.1 NaN 18695 4391 23081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23090 92.453 NaN 914490 35 0 155940 0.327 + 10923 IYADYIAPLF 10 74 593.3128754391342 1184.6111979450684 2 593.3135375976562 MULTI HCD FTMS 0 0 0 23089 221588.28125 0.25679876200457913 8 -0.21990203857421875 1 Unmodified _IYADYIAPLF_ ENSG00000084073|ENST00000372759|ZMPSTE24 46.020951573049366 0.09315764076686055 2 Y{I|L}AP{I|L}{M(Oxidation (M))|F} 6 4 34.857 0 0 2.9424 0 0 462.21238906074376 0 462.21238906074376 0 0.4806908867894961 0 0 0 1.8737125054200234 0 0 0 + Y{I|L}AP{I|L}{M(Oxidation (M))|F} 2.9424 + + 954 NaN NaN 240120.9 NaN 18696 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23091 92.458 NaN 513220 35 0 71897 0.261 + 34505 YPFLLVGDLM 10 57 592.3073115371516 NaN 0 592.3073120117188 PEAK HCD FTMS 0 0 0 23089 265885.25 0.46550402381748046 4 -0.11154937744140625 2 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 78.14939416004806 0.014559931198491492 2 {I|L}E{I|L}{I|L}VGD 7 5 57.071 0 0 4.8259 0 0 165.0446402698006 275.1065767877563 440.1512170575569 0 0 0 0 0 2.110924374808178 0 0.8494850021680094 0 {I|L}E{I|L}{I|L}VGD 4.8259 - 261 + NaN NaN 177226 NaN 18697 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23092 92.461 NaN 952610 35 0 325980 0.261 -1 0 74 633.3543917641165 632.3471152975164 1 633.3692016601562 MULTI HCD FTMS 0 0 0 23089 36934 0.5236960002250954 4 -0.11154937744140625 3 NaN NaN 2 D 1 -1 5.401 0 0 0.85412 0 0 53.984457682085186 460.3060809775423 514.2905386596275 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.85412 - 7 + NaN NaN 234430.8 NaN 18698 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23093 92.465 NaN 350900 35 0 24951 0.264 -1 0 79 437.25721486719715 1308.7498152017915 3 437.2573547363281 MULTI HCD FTMS 0 0 0 23089 247751.15625 0.5562886319005202 -11 0.31610870361328125 4 NaN NaN 2 NS 2 -1 10.049 0 0 0.76786 0 0 282.16787564108773 822.4398897760374 1104.6077654171252 0 0 0 0 0 0.4247425010840047 0 0.5 0 NS 0.76786 - 67 + NaN NaN 166544.1 NaN 18699 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23094 92.468 NaN 102220 35 0 8934.8 0.261 -1 0 47 422.5819131158917 1264.7239099478752 3 422.5816345214844 MULTI HCD FTMS 0 0 0 23089 44131.375 0.10385231275180272 44 -1.0840072631835938 5 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 0.98632 0 0 1099.644730115647 0 1099.644730115647 0 12.474250108400469 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.98632 - 3 + NaN NaN 110436.5 NaN 18700 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23095 92.471 NaN 299440 35 0 44099 0.261 + 15468 LPDLSHLTE 9 74 512.7699528399272 1023.5253527466544 2 512.7698364257812 MULTI HCD FTMS 0 0 0 23089 61331.8828125 0.38227685140431145 -4 0.1015472412109375 6 Unmodified _LPDLSHLTE_ ENSG00000079841|ENST00000521978|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1 25.399314129420986 0.14091189997036632 2 {I|L}PD{I|L} 4 5 53.321 0 0 5.2095 0 0 0 582.2536603930699 582.2536603930699 22.698405410982616 0 0 0 0 1.066901560044258 1.5228787452803376 0 0 + {I|L}PD{I|L} 5.2095 + + 426 + NaN NaN 134846.3 NaN 18701 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23096 92.475 NaN 77192 35 0 7827.2 0.261 -1 FFFYTCLL 8 38 555.7715978651405 1109.528642797081 2 555.7716674804688 MULTI HCD FTMS 0 0 0 23089 14148.1396484375 0.2597667765929285 4 -0.11154937744140625 7 Carbamidomethyl (C) _FFFYTC(Carbamidomethyl (C))LL_ ENST00000435030.1_2:149879593-149879722:+|nuORF 2.577480529830294 0.5381683276125971 2 E{I|L} 2 -1 20.969 0 0 1.8899 0 0 849.391893455275 0 849.391893455275 0 13.979400086720375 0 0 0 0 0 0 0 E{I|L} 1.8899 - 4 NaN NaN 92542.1 NaN 18702 4392 23089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23098 92.48 NaN 1148900 35 0 242940 0.327 + 6594 FPLLLQEAL 9 61 522.3099922352565 1042.6054315373128 2 521.794677734375 MULTI HCD FTMS 0 0 0 23097 29499.14453125 0.4903815671444173 -8 0.21250152587890625 1 Unmodified _FPLLLQEAL_ ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3 19.256988751693697 0.19398022840297344 2 VE[HA]P{M(Oxidation (M))|F}{I|L}V 8 9 24.174 0 0 2.3186 0 0 132.12577582863986 0 132.12577582863986 0 0.4968123769230459 0 0 0 0.3494850021680094 0 0.3054621874040891 0 VE[HA]P{M(Oxidation (M))|F}{I|L}V 2.3186 - 191 + NaN NaN 259889.7 NaN 18703 4393 23097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23099 92.484 NaN 1510800 35 0 295260 0.261 + 20258 NYLPFIMEL 9 77 578.2912552508974 1154.5679575685947 2 578.29150390625 MULTI HCD FTMS 0 0 0 23097 694233.875 0.4149660992318018 14 -0.39403533935546875 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 152.41221235671458 6.276234901293889E-06 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 101.07 0 0 8.7541 8.7541 97.293 0 0 0 20.414478256039672 14.973024840566467 14.973024840566467 39.366903183326514 0 2.555462187404089 1.2218487496163564 0 1.646591250700361 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[VP][YQ]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[TV]|[{I|L}S]}{[WT]|[RM]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}M{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YN]{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[YN]{I|L} 8.7541;5.3444;4.492;4.3395;4.2815;3.8634;0.28443;0.13191 +;-;-;-;-;-;-;- + 648 NaN NaN 319313.7 NaN 18704 4393 23097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23100 92.488 NaN 224360 35 0 37733 0.261 -1 0 75 589.2823237492678 1176.5500945653355 2 589.2831420898438 MULTI HCD FTMS 0 0 0 23097 71721.015625 0.3977893145552665 9 -0.24611663818359375 3 NaN NaN 2 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E 8 -1 50.781 0 0 4.3161 0 0 0 128.0719629878728 128.0719629878728 34.671619863185725 0 0 0 0 1.6307196863200843 1.6989700043360187 0 0.6549471895720985 [YN]{I|L}{[YC]|[HE]}{I|L}{M(Oxidation (M))|F}E 4.3161 - 272 NaN NaN 128093.7 NaN 18705 4393 23097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23101 92.491 NaN 68240 35 0 10585 0.263 + 7141 FSDTRDLD 8 45 484.71891771367376 967.4232824941475 2 485.2198181152344 MULTI HCD FTMS 0 0 0 23097 20863.404296875 0.23428320334004027 13 -0.35779571533203125 4 Unmodified _FSDTRDLD_ REV__tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 2.577480529830294 0.5381683276125971 2 {[VA]|[{I|L}G]}{I|L} 3 -1 7.4473 0 0 0.76981 0 0 0 681.1997774713499 681.1997774713499 2.8431811792050627 0 0 0 0 0 0 0 0 {[VA]|[{I|L}G]}{I|L} 0.76981 - 5 + NaN NaN 100862.9 NaN 18706 4393 23097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23102 92.494 NaN 77412 35 0 9032.7 0.261 -1 CQFEQCIVC 9 40 622.2497368872274 NaN 0 622.2499389648438 PEAK HCD FTMS 0 0 0 23097 29812.853515625 1 0 0 5 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))QFEQC(Carbamidomethyl (C))IVC(Carbamidomethyl (C))_ ENSG00000112685|ENST00000230449|EXOC2 2.302733041254933 0.2840881193086663 2 {I|L}NWHH{I|L} 6 -1 9.3855 0 0 0.75538 0 0 164.97657230785472 274.08298669986567 439.0595590077204 0 0 0 0 0 0 0 0 0 {I|L}NWHH{I|L} 0.75538 - 51 + NaN NaN 105315.1 NaN 18707 4393 23097 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23104 92.499 NaN 245580 35 0 40968 0.327 + 22340 QPLIIAVVL 9 32 483.32331685784794 964.6320807824959 2 483.32330322265625 MULTI HCD FTMS 0 0 0 23103 74369.8671875 0.026335778118813984 -8 0.2092437744140625 1 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 23.1484247019978 0.1603590852062899 2 V{I|L} 2 7 25.969 0 0 2.6921 0 0 734.468501944603 0 734.468501944603 0 14.731975075880328 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 9 NaN NaN 125092 NaN 18708 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23105 92.504 NaN 442660 35 0 53986 0.261 -1 LLVCFYEI 8 65 528.7749143837757 1055.5352758343513 2 528.784423828125 MULTI HCD FTMS 0 0 0 23103 21523.2890625 0.01144237958347092 48 -1.1821136474609375 2 Carbamidomethyl (C) _LLVC(Carbamidomethyl (C))FYEI_ ENSG00000137414|ENST00000259963|FAM8A1 18.13498045792455 0.4603629008820478 2 EY{M(Oxidation (M))|F}{I|L}S 5 -1 34.201 0 0 3.2402 0 0 131.08037132935561 282.14545618228755 413.22582751164316 0 0 0 0 0 0.7742275032520141 0 1.079689690656103 0 EY{M(Oxidation (M))|F}{I|L}S 3.2402 - 159 + NaN NaN 159664.9 NaN 18709 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23106 92.507 NaN 77325 35 0 5925.9 0.261 -1 0 52 641.8826105638228 1281.7506681944456 2 641.88232421875 MULTI HCD FTMS 0 0 0 23103 61213.86328125 0.037095699869368774 45 -1.1135025024414062 3 NaN NaN 2 D 1 -1 5.4846 0 0 0.4279 0 0 105.08416691840723 1058.5935762994752 1163.6777432178824 0 0 0 0 0 0 0 0 0 D 0.4279 - 8 + NaN NaN 102776.2 NaN 18710 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23107 92.511 NaN 186050 35 0 60751 0.261 + 5116 FEQANEPHF 9 45 559.7468371369962 1117.4791213407923 2 559.764892578125 MULTI HCD FTMS 0 0 0 23103 6407.81640625 1 0 0 4 Unmodified _FEQANEPHF_ REV__ENSG00000177888|ENST00000367405|ZBTB41;REV__ENST00000467322.1_1_1:197145142-197169603:-|nuORF;REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41 8.593279151180031 0.2858735984551981 2 [HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 9 -1 + 35.864 0 0 3.2093 3.2093 81.728 0 0 0 26.822581265925443 0.7378621416091917 0.7378621416091917 3.4678748622465676 0 0 0 0 0 [HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TA]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[YR]S{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}[YR]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][WH]{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[RN][WP] 3.2093;2.899;2.899;2.6296;0.86496 -;-;-;-;- 90 + NaN NaN 111847.9 NaN 18711 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23108 92.514 NaN 89704 35 0 5442.2 0.261 + 22498 QRRGRLGVF 9 58 544.824748300056 1087.6349436669118 2 544.8250122070312 MULTI HCD FTMS 0 0 0 23103 34366.15625 0.3860628108550534 -4 0.0916290283203125 5 Unmodified _QRRGRLGVF_ REV__CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant;REV__ENSG00000008300|ENST00000164024|CELSR3;REV__nc|ENSG00000008300|Q9NYQ7-2|CELSR3 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.5621 0 0 922.5564352214025 0 922.5564352214025 0 3.8021124171160636 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5621 + + 18 + NaN NaN 99888.2 NaN 18712 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23109 92.517 NaN 284450 35 0 20391 0.261 + 13814 KYPSPFFVF 9 70 566.2974339066556 1130.580314880111 2 566.2981567382812 MULTI HCD FTMS 0 0 0 23103 31554.625 0.13855327454281102 -8 0.2092437744140625 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.13340543277302316 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 30.802 0 0 2.7244 0 0 719.3661976544937 0 719.3661976544937 0 10.30726239543597 0 0 0 0.7614393726401688 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.7244 + + 822 NaN NaN 135444.4 NaN 18713 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23110 92.521 NaN 135080 35 0 23141 0.261 + 14218 LATLIQDVF 9 45 510.2919629681476 1018.5693730030952 2 510.2925109863281 MULTI HCD FTMS 0 0 0 23103 16822.255859375 0.29522266856219864 -2 0.04584503173828125 7 Unmodified _LATLIQDVF_ REV__ENSG00000256188|ENST00000539585|TAS2R30 8.593279151180031 0.2858735984551981 2 TV{M(Oxidation (M))|F} 3 -1 24.693 0 0 2.4243 0 0 653.3735244696952 0 653.3735244696952 0 6.747425010840043 0 0 0 0 0 0 0 TV{M(Oxidation (M))|F} 2.4243 - 80 + NaN NaN 107304.6 NaN 18714 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23111 92.524 NaN 154250 35 0 11812 0.261 -1 YLIVVLICL 9 65 553.3380959456053 NaN 0 553.3378295898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _YLIVVLIC(Carbamidomethyl (C))L_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|4 5.230669730166228 0.26989974671959066 2 {I|L}D 2 -1 7.9588 0 0 0.72047 0 0 616.4140895124526 257.11448084049067 873.5285703529432 0 0 0 0 0 0 0 0 0 {I|L}D 0.72047 - 210 + NaN NaN 118717.2 NaN 18715 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23112 92.527 NaN 91487 35 0 7820.9 0.261 + 21212 PQRARAILS 9 41 506.3073688783108 1010.6001848234216 2 506.306640625 MULTI HCD FTMS 0 0 0 23103 5676.515625 0.06462864461957199 6 -0.1740570068359375 9 Unmodified _PQRARAILS_ ENST00000494253.1_1_10:71144437-71146246:+|nuORF 6.723162845929126 0.3000504726104499 2 {I|L}S{I|L} 3 8 26.682 0 0 2.6403 0 0 679.3937855451187 0 679.3937855451187 0 18.610469015915783 0 0 0 0.5 0 0 0 {I|L}S{I|L} 2.6403 - 17 NaN NaN 112132.4 NaN 18716 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23113 92.531 NaN 108230 35 0 21329 0.261 + 5691 FPAGFVLQL 9 41 496.2842212810929 990.5538896289859 2 496.28460693359375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _FPAGFVLQL_ ENSG00000168005|ENST00000294244|SPINDOC 8.593279151180031 0.2858735984551981 2 V{I|L}Q{I|L} 4 5 25.037 0 0 2.5276 0 0 519.24614150215 0 519.24614150215 0 25.037144051603093 0 0 0 0 0 0 0 + V{I|L}Q{I|L} 2.5276 + + 9 NaN NaN 119413.3 NaN 18717 4394 23103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23115 92.535 NaN 296960 35 0 16721 0.327 -1 0 77 451.93253336616567 1352.775770698697 3 451.9327392578125 MULTI HCD FTMS 0 0 0 23114 169701.125 0.6032273515757743 3 -0.08533477783203125 1 NaN NaN 2 K 1 -1 7.2185 0 0 0.53361 0 0 938.5295655087601 283.11896692447505 1221.6485324332352 0 0 0 0 0 0.5 0 0 0 K 0.53361 - 33 + NaN NaN 152114.1 NaN 18718 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23116 92.54 NaN 312470 35 0 18131 0.261 + 23264 RGRRGGVRPR 10 89 583.8585015234585 1165.7024501137168 2 583.8588256835938 MULTI HCD FTMS 0 0 0 23114 182028.390625 0.77515103539515 -2 0.05574798583984375 2 Unmodified _RGRRGGVRPR_ ENST00000355280.10_1_17:4736705-4736843:+|nuORF 1.4819007175156935 0.4674597685733628 2 D 1 10 7.4743 0 0 0.64118 0 0 61.05100649311846 986.5745697651154 1047.6255762582339 0 0 0 0 0 0.5 0 0 0 D 0.64118 - 140 + NaN NaN 153867.9 NaN 18719 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23117 92.543 NaN 620890 35 0 154020 0.261 + 22421 QPYGGFLDIL 10 59 561.7951575475485 1121.5757621618968 2 561.7952270507812 MULTI HCD FTMS 0 0 0 23114 208404.078125 0.0908057900303163 -6 0.1539764404296875 3 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 69.10491478415734 0.018645933849003846 2 {NN|[MP]|[D{I|L}]|[EV]}HH{M(Oxidation (M))|F}{I|L}D{I|L} 8 5 59.486 0 0 5.3038 0 0 0 128.07247725683922 128.07247725683922 44.0018312907727 0 0 0 0 1.3494850021680094 1.5228787452803376 0.7302046884880937 0.805462187404089 {NN|[MP]|[D{I|L}]|[EV]}HH{M(Oxidation (M))|F}{I|L}D{I|L} 5.3038 - 158 NaN NaN 183779.5 NaN 18720 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23118 92.547 NaN 287220 35 0 37240 0.261 + 10562 IPIMYEDAI 9 56 532.7702772811564 1063.5260016291127 2 532.7705688476562 MULTI HCD FTMS 0 0 0 23114 39270.72265625 0.40217972155589904 -1 0.03617095947265625 4 Unmodified _IPIMYEDAI_ REV__ENSG00000168702|ENST00000389484|LRP1B;REV__LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;REV__LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 12.531546534597751 0.2520865569484384 2 {I|L}A{I|L} 3 -1 29.693 0 0 2.7919 0 0 748.3101063459 0 748.3101063459 0 4.739152941678313 0 0 0 0.5 0 0 0 {I|L}A{I|L} 2.7919 - 52 NaN NaN 129780.5 NaN 18721 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23119 92.55 NaN 175080 35 0 15666 0.261 + 2170 DICHFLDIE 9 59 552.7570387818948 1103.4995246305896 2 552.75732421875 MULTI HCD FTMS 0 0 0 23114 52393.62890625 0.47572683750660505 -6 0.1539764404296875 5 Unmodified _DICHFLDIE_ REV__ENSG00000110958|ENST00000262033|PTGES3;REV__ENST00000537473.2_1_12:57059942-57081218:-|nuORF;REV__nc|ENSG00000110958|Q15185-2|PTGES3;REV__nc|ENSG00000110958|Q15185-3|PTGES3;REV__nc|ENSG00000110958|Q15185-4|PTGES3 20.453626601364224 0.18364154288633264 2 {[QN]|[E{I|L}]|[KN]}DEE{I|L}DE{I|L} 9 -1 + 35.072 0 0 3.1782 3.1782 82.086 0 0 0 0.514611430754151 22.368800006334347 0.514611430754151 4.43697499232713 0 1 0 0 0 {[QN]|[E{I|L}]|[KN]}DEE{I|L}DE{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[NS]{[VA]|[{I|L}G]}{I|L}DE{I|L};{[QN]|[E{I|L}]|[KN]}[{M(Oxidation (M))|F}V][HC]DE{I|L};{[QN]|[E{I|L}]|[KN]}D{I|L}EEDE{I|L} 3.1782;2.7762;2.2863;1.9593 -;-;-;- 189 NaN NaN 116080.7 NaN 18722 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23120 92.553 NaN 110660 35 0 7865.9 0.261 + 25890 SMWFLWNIF 9 46 622.3025334881227 1242.5905140430452 2 622.80419921875 MULTI HCD FTMS 0 0 0 23114 19148.12890625 0.9132245693039075 1 -0.02953338623046875 6 Unmodified _SMWFLWNIF_ nc|ENSG00000102466|Q92915-2|FGF14 17.11289562659939 0.2125047172822487 2 [YN]{I|L}HHWN{I|L}{M(Oxidation (M))|F} 9 5 + 56.321 0 0 4.5326 4.5326 86.261 0 0 0 18.23908740944318 16.478174818886373 16.478174818886373 9.208187539523749 0 1 1.5228787452803376 0 0 [YN]{I|L}HHWN{I|L}{M(Oxidation (M))|F};[YN]{I|L}HHWGG{I|L}{M(Oxidation (M))|F};[YN]{I|L}{[QN]|[E{I|L}]|[KN]}{[MS]|[{M(Oxidation (M))|F}A]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YHHWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YHH{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}YHHWGG{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}Y{[QN]|[E{I|L}]|[KN]}{[MS]|[{M(Oxidation (M))|F}A]}N{I|L}{M(Oxidation (M))|F} 4.5326;3.7915;3.4533;3.0647;2.6301;2.3237;1.9854 -;-;-;-;-;-;- 134 NaN NaN 118204.6 NaN 18723 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23121 92.557 NaN 91381 35 0 17478 0.261 + 23046 RDQEMAAGFFT 11 51 636.7886126862488 NaN 0 636.7890014648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RDQEMAAGFFT_ ENSG00000197037|ENST00000394152|ZSCAN25;ENST00000473646.5_1_7:99214596-99221826:+|nuORF 4.189502756095605 0.3302357306631285 2 PT 2 10 15.969 0 0 1.2559 0 0 68.02942156214756 1002.4132784479124 1070.44270001006 0 0 0 0 0 0.5 0 0 0 PT 1.2559 - 17 + NaN NaN 108284.2 NaN 18724 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23122 92.56 NaN 81308 35 0 13137 0.264 + 14997 LLLIQITE 8 40 471.7956330469464 NaN 0 471.7955322265625 PEAK HCD FTMS 0 0 0 23114 28874.921875 1 0 0 8 Unmodified _LLLIQITE_ ENSG00000198765|ENST00000369522|SYCP1 0.7936320650641473 0.38822285293237185 2 N 1 8 4.6041 0 0 0.48898 0 0 619.3780264925273 205.13450037174064 824.5125268642679 0 0 0 0 0 0 0 0 0 N 0.48898 - 1 + NaN NaN 97277.7 NaN 18725 4395 23114 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23124 92.565 NaN 1549600 35 0 228740 0.327 + 19401 NPFQFEITF 9 86 571.7800130412154 1141.5454731492307 2 571.7797241210938 MULTI HCD FTMS 0 0 0 23123 1242407.875 0.7405292032283507 3 -0.08541107177734375 1 Unmodified _NPFQFEITF_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 122.17920374332846 0.0010792739174387011 2 Q{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 6 3 80.527 0 0 7.0542 0 0 358.16353041816564 0 358.16353041816564 0 39.15936188117417 0 0 0 2.5356668758921828 0 0.805462187404089 1.0484550065040281 + Q{M(Oxidation (M))|F}E{I|L}T{M(Oxidation (M))|F} 7.0542 + + 692 NaN NaN 324373 NaN 18726 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23125 92.569 NaN 933330 35 0 319130 0.261 + 15405 LPDIALDVF 9 49 501.778948558952 1001.543344184704 2 501.7790832519531 MULTI HCD FTMS 0 0 0 23123 827043 1 0 0 2 Unmodified _LPDIALDVF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 52.268347100219714 0.028397529699942435 2 {I|L}A{I|L}DV{M(Oxidation (M))|F} 6 3 61.899 0 0 6.1804 0 0 325.16313368965 0 325.16313368965 0 31.721675119240516 0 0 0 2 0 0.4247425010840047 0 + {I|L}A{I|L}DV{M(Oxidation (M))|F} 6.1804 + + 51 NaN NaN 235505.1 NaN 18727 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23126 92.573 NaN 306940 35 0 14348 0.261 + 8207 GRALHRRRQ 9 89 575.3453526359716 1148.6761523387431 2 575.345703125 MULTI HCD FTMS 0 0 0 23123 295817.78125 0.7727028845562829 -1 0.02953338623046875 3 Unmodified _GRALHRRRQ_ ENST00000368061.2_1_1:160388904-160390242:+|nuORF 3.944395688203298 0.32111559684428237 2 {I|L}Y 2 8 8.9845 0 0 0.78216 0 0 546.3251524381557 323.17121301822505 869.4963654563808 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L}Y 0.78216 - 112 + NaN NaN 139695.4 NaN 18728 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23127 92.576 NaN 715790 35 0 148940 0.261 + 18386 MPPWENIWL 9 56 601.2890662512833 1200.5635795693665 2 601.2890014648438 MULTI HCD FTMS 0 0 0 23123 473499.59375 1 0 0 4 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 51.629811660486645 0.02929079705179888 2 EN{I|L}W{I|L} 5 4 65.01 0 0 5.415 0 0 527.2172346439073 0 527.2172346439073 0 59.32355833711766 0 0 0 1.805462187404089 0 0.28872548999643577 0.6109243748081782 + EN{I|L}W{I|L} 5.415 + + 116 NaN NaN 190332.3 NaN 18729 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23128 92.58 NaN 481920 35 0 67516 0.261 + -1 YLILMCTIF 9 65 595.3039515424074 1188.5933501516147 2 595.2919921875 MULTI HCD FTMS 0 0 0 23123 83875.015625 1 0 0 5 Carbamidomethyl (C),Oxidation (M) _YLILM(Oxidation (M))C(Carbamidomethyl (C))TIF_ REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF 28.486842064014134 0.11819662193267319 2 [Y{I|L}]{I|L}[YC(Carbamidomethyl (C))][TP]{I|L}{M(Oxidation (M))|F} 9 -1 + 37.544 0 0 3.1587 3.1587 81.587 0 0 0 6.959531226922103 5.620149727660305 5.620149727660305 3.155980316589371 0 1.3494850021680094 1.5228787452803376 0 0 [Y{I|L}]{I|L}[YC(Carbamidomethyl (C))][TP]{I|L}{M(Oxidation (M))|F};[Y{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}{NN|[MP]|[D{I|L}]|[EV]}Y{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}[YC(Carbamidomethyl (C))][TP]{M(Oxidation (M))|F}{I|L};[Y{I|L}]{[QD]|[EN]|[WG]|[KD]|[RS]}{NN|[MP]|[D{I|L}]|[EV]}Y{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}T][KA]{[WN]|[YH]}Y{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][KA]{[WN]|[YH]}Y{M(Oxidation (M))|F}{I|L} 3.1587;2.8931;2.6521;2.3866;1.0013;0.49475 -;-;-;-;-;- 164 NaN NaN 172686.1 NaN 18730 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23129 92.583 NaN 316020 35 0 37777 0.261 + 26870 SYIPLFPQL 9 50 539.3024992409976 1076.590445548795 2 539.3030395507812 MULTI HCD FTMS 0 0 0 23123 126452.7265625 0.0881332491369383 12 -0.3416595458984375 6 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 32.78568957990786 0.09846250359632436 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 36.105 0 0 3.3536 3.3536 89.03 0 0 0 7.147642715192511 29.11499974934039 7.147642715192511 36.10469979270058 0 1.774227503252014 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 3.3536 + + 80 NaN NaN 148570.9 NaN 18731 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23130 92.586 NaN 197700 35 0 23369 0.261 + 13611 KYPENFFLL 9 59 585.8134525913252 1169.6123522494504 2 585.8134155273438 MULTI HCD FTMS 0 0 0 23123 128601.390625 0.24764753334542913 21 -0.5542831420898438 7 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 23.789781309258295 0.1548179064208189 2 C(Carbamidomethyl (C))EP{I|L} 4 7 30.556 0 0 2.6125 0 0 652.3598499982437 0 652.3598499982437 0 13.236497596446416 0 0 0 0.7614393726401688 0 0 0 C(Carbamidomethyl (C))EP{I|L} 2.6125 - 117 NaN NaN 118970.7 NaN 18732 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23131 92.59 NaN 75767 35 0 4336.3 0.261 + 14939 LLFFFRLSPV 10 41 619.8693815573286 1237.724210181457 2 619.8695678710938 MULTI HCD FTMS 0 0 0 23123 38117 0.6154903109629026 4 -0.1083526611328125 8 Unmodified _LLFFFRLSPV_ REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF 1.6526216038709556 0.46655611578153744 2 {M(Oxidation (M))|F}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 12.747 0 0 1.0299 0 0 697.4993699488383 0 697.4993699488383 0 1.0649218306807011 0 0 0 0 0 0.3054621874040891 0 {M(Oxidation (M))|F}D{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.0299 - 21 + NaN NaN 106268.5 NaN 18733 4396 23123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23133 92.595 NaN 1282100 35 0 205240 0.327 + 11451 IYQEVWNLF 9 78 606.30825604803 1210.6019591628599 2 606.30859375 MULTI HCD FTMS 0 0 0 23132 814665.375 0.9173209250843382 1 -0.026275634765625 1 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 90.13494162714682 0.004522430935000059 2 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F} 10 2 + 93.057 0 0 7.6869 7.6869 87.062 0 0 0 14.013597209371895 55.190322953457525 14.013597209371895 0.3922952486291251 0 2.6861818737241734 1.0969100130080565 0.3054621874040891 0.4247425010840047 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWGG{I|L}{M(Oxidation (M))|F};[YQ]{I|L}EVWN{I|L}{M(Oxidation (M))|F};[YQ]{I|L}EVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}WY{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]G[W{I|L}]{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F} 7.6869;7.6544;6.8938;6.579;6.5182;5.7576;5.2461;5.2039;4.8479;4.5233 -;+;-;-;-;-;-;-;-;- + 2519 NaN NaN 303806.8 NaN 18734 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23134 92.599 NaN 323450 35 0 73169 0.264 + -1 LCKCGASG 8 46 419.1834313272922 836.3523097213845 2 419.1834411621094 MULTI HCD FTMS 0 0 0 23132 365718.8125 0.663071474820739 1 -0.026275634765625 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))KCGASG_ REV__ENST00000547035.5_1_12:53887565-53887598:-|nuORF 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 4.9164 0 0 0.58784 0 0 568.1725744692345 152.0714510553344 720.2440255245689 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 0.58784 + + 2 + NaN NaN 142525.3 NaN 18735 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23135 92.603 NaN 197520 35 0 15341 0.261 + 16325 LRHLQAMKKFV 11 70 457.6080627048665 1369.8023587147995 3 457.6083068847656 MULTI HCD FTMS 0 0 0 23132 85947.09375 0.701567988857793 9 -0.24298858642578125 3 Unmodified _LRHLQAMKKFV_ ENSG00000075073|ENST00000373306|TACR2 0.5059551277355931 0.4167017191902429 2 V 1 10 3.0989 0 0 0.22623 0 0 867.5036049079621 400.20368372135005 1267.7072886293122 0 0 0 0 0 0 0 0 0 + V 0.22623 + + 10 + NaN NaN 134983.5 NaN 18736 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23136 92.606 NaN 283120 35 0 25647 0.261 + 2171 DICHFLDIE 9 70 552.7570387818948 1103.4995246305896 2 552.7571411132812 MULTI HCD FTMS 0 0 0 23132 109312.6875 0.9925439449283766 -4 0.11480712890625 4 Unmodified _DICHFLDIE_ REV__ENSG00000110958|ENST00000262033|PTGES3;REV__ENST00000537473.2_1_12:57059942-57081218:-|nuORF;REV__nc|ENSG00000110958|Q15185-2|PTGES3;REV__nc|ENSG00000110958|Q15185-3|PTGES3;REV__nc|ENSG00000110958|Q15185-4|PTGES3 32.30548876998284 0.10066689432505688 2 {I|L}{[VA]|[{I|L}G]}{I|L}DE{I|L} 7 -1 42.083 0 0 3.8136 0 0 332.0610829084 0 332.0610829084 0 22.4822009461689 0 0 0 2.1861818737241734 0 0 0 {I|L}{[VA]|[{I|L}G]}{I|L}DE{I|L} 3.8136 - 1128 NaN NaN 139409.1 NaN 18737 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23137 92.609 NaN 107240 35 0 6863.1 0.261 -1 FPVNQLFDML 10 52 620.307614273246 1238.600675613292 2 620.3076171875 MULTI HCD FTMS 0 0 0 23132 18692.671875 0.058666038584119125 30 -0.7137603759765625 5 Oxidation (M) _FPVNQLFDM(Oxidation (M))L_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 23.789781309258295 0.28859042913526417 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 -1 40.745 0 0 3.2896 0 0 698.3737660138687 0 698.3737660138687 0 40.74539712336197 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.2896 + + 11 NaN NaN 115123.1 NaN 18738 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23138 92.613 NaN 67204 35 0 9224.4 0.263 + 16582 LVFKKTIV 8 23 474.31786137438866 946.6211698155773 2 474.318359375 MULTI HCD FTMS 0 0 0 23132 25756.419921875 0.3858094209058457 -5 0.14107513427734375 6 Unmodified _LVFKKTIV_ ENSG00000160593|ENST00000356289|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-2|JAML;nc|ENSG00000160593|Q86YT9-3|JAML;nc|ENSG00000160593|Q86YT9-4|JAML 9.347437153973935 0.5250182646323369 2 {M(Oxidation (M))|F}{[VA]|[{I|L}G]}V{I|L} 5 6 9.973 0 0 1.0535 0 0 399.2864663017086 0 399.2864663017086 0 9.973024840566465 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}{[VA]|[{I|L}G]}V{I|L} 1.0535 - 9 + NaN NaN 113327.7 NaN 18739 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23139 92.616 NaN 87064 35 0 10909 0.261 + -1 DIMLGTFIS 9 40 506.7528056669028 NaN 0 506.75347900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _DIM(Oxidation (M))LGTFIS_ REV__ENSG00000115368|ENST00000314761|WDR75;REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF;REV__ENST00000498365.1_1_2:190328546-190328696:+|nuORF 6.723162845929126 0.26266733336404485 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 1.1853 0 0 646.2971539747974 215.10337244205314 861.4005264168505 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.1853 + + 4 + NaN NaN 102642.2 NaN 18740 4397 23132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23141 92.621 NaN 929350 35 0 175410 0.327 + 20259 NYLPFIMEL 9 78 578.2912552508974 1154.5679575685947 2 578.2915649414062 MULTI HCD FTMS 0 0 0 23140 359394.46875 0.21482172817146553 19 -0.49848175048828125 1 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 139.13845188893973 5.0762478717762276E-05 2 [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 98.955 0 0 8.5708 8.5708 96.34 0 0 0 26.94537812595911 16.478174818886373 16.478174818886373 26.94537812595911 0 2.548455006504028 1.2218487496163564 0 1.2658715643802767 + + [YN]{I|L}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP][YV]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};[QP]{M(Oxidation (M))|F}[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{I|L}T]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[{I|L}T]{I|L}{M(Oxidation (M))|F}E{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}E{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[HK]E{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[YN]{I|L};{[QN]|[E{I|L}]|[KN]}[RN][NG]{I|L}D[QP] 8.5708;6.237;4.2374;3.717;3.5851;3.0647;2.9565;0.52685;0.464;0.39944 +;-;-;-;-;-;-;-;-;- + 814 NaN NaN 253738.6 NaN 18741 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23142 92.625 NaN 463950 35 0 26380 0.263 -1 0 89 437.25721486719715 1308.7498152017915 3 437.25738525390625 MULTI HCD FTMS 0 0 0 23140 372942.75 0.8373878665792008 -5 0.141082763671875 2 NaN NaN 2 Q 1 -1 9.732 0 0 0.74361 0 0 722.4314691097978 455.2484650373226 1177.6799341471205 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.74361 - 67 + NaN NaN 163861.2 NaN 18742 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23143 92.629 NaN 727650 35 0 100220 0.261 + 28185 TKLQLQEAL 9 58 522.3099922352565 1042.6054315373128 2 521.7946166992188 MULTI HCD FTMS 0 0 0 23140 35910.25 0.5969571304989166 -3 0.08533477783203125 3 Unmodified _TKLQLQEAL_ ENSG00000151065|ENST00000280665|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;nc|ENSG00000151065|Q8IZD4-2|DCP1B 17.44264345198275 0.2096557692338702 2 {I|L}Q[DV]V 5 7 23.328 0 0 2.2374 0 0 470.2902565261905 0 470.2902565261905 0 16.338031200885155 0 0 0 0.6505149978319906 0 0 0 {I|L}Q[DV]V 2.2374 - 41 NaN NaN 201994.6 NaN 18743 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23144 92.632 NaN 295580 35 0 49095 0.261 + 28942 TWYPVSIPAF 10 52 590.8054365670644 1179.5963202009286 2 590.8062744140625 MULTI HCD FTMS 0 0 0 23140 107763.28125 0.07132877486663908 23 -0.5829010009765625 4 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 39.94969957227396 0.1458432724694501 2 [YN]{I|L}QQS{I|L}[PA]{M(Oxidation (M))|F} 10 5 + 43.645 0 0 3.7 3.7 80.905 0 0 0 0.5237875363565792 6.020599913279625 0.5237875363565792 0.5237875363565792 0 0.9247425010840047 0 0.7742275032520141 0 [YN]{I|L}QQS{I|L}[PA]{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S{I|L}[PA]{M(Oxidation (M))|F};[YN]{I|L}QQS[PA]{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP]S[PA]{I|L}{M(Oxidation (M))|F};[YN]{I|L}QQS{I|L}{[DS]|[MA]|[CV]|TT}{I|L};{[WT]|[RM]}Y[VP]S{I|L}{[DS]|[MA]|[CV]|TT}{I|L};[YN]{I|L}QQS[PA]{M(Oxidation (M))|F}{I|L};{[WT]|[RM]}Y[VP]S[PA]{M(Oxidation (M))|F}{I|L};[YN]{I|L}QQ[TP]G{I|L}{M(Oxidation (M))|F};{[WT]|[RM]}Y[VP][TP]G{I|L}{M(Oxidation (M))|F} 3.7;3.6556;3.3399;3.2955;3.1896;3.1452;2.8295;2.7851;2.1094;2.065 -;+;-;-;-;-;-;-;-;- + 232 NaN NaN 135474.5 NaN 18744 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23145 92.635 NaN 297130 35 0 60810 0.261 -1 0 59 633.3543917641165 632.3471152975164 1 633.3695678710938 MULTI HCD FTMS 0 0 0 23140 17869.21875 0.2533719171095002 10 -0.285858154296875 5 NaN NaN 2 D 1 -1 5.401 0 0 0.85412 0 0 53.985129068803936 460.306431861441 514.2915609302449 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.85412 - 5 + NaN NaN 136207.1 NaN 18745 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23146 92.639 NaN 206960 35 0 35957 0.263 + 15936 LPPEEPPVF 9 55 512.7699528399272 1023.5253527466544 2 512.7704467773438 MULTI HCD FTMS 0 0 0 23140 87902.25 0.5478878818066554 2 -0.05255126953125 6 Unmodified _LPPEEPPVF_ REV__ENSG00000261236|ENST00000569669|BOP1;REV__nc|ENSG00000261236|Q14137-2|BOP1 28.486842064014134 0.11819662193267319 2 {I|L}PD{I|L}[{I|L}A]D 7 -1 60.991 0 0 5.9589 0 0 0 283.1057528131469 283.1057528131469 32.719683826666056 0 0 0 0 1.4749073637206092 1.3010299956639813 0 0 {I|L}PD{I|L}[{I|L}A]D 5.9589 - 115 + NaN NaN 122015 NaN 18746 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23147 92.642 NaN 221200 35 0 56671 0.262 -1 0 40 405.1188912146128 808.2232294960256 2 405.118896484375 MULTI HCD FTMS 0 0 0 23140 72265.09375 0.3807114128654239 19 -0.49848175048828125 7 NaN NaN 2 {[C(Carbamidomethyl (C))E]|[WC]}P 3 -1 0.94212 0 0 0.11657 0 0 0 419.06509285956 419.06509285956 0.9421249706470308 0 0 0 0 0 0 0 0 {[C(Carbamidomethyl (C))E]|[WC]}P 0.11657 - 5 NaN NaN 127317.9 NaN 18747 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23148 92.645 NaN 91537 35 0 10483 0.261 + -1 MPLDLFVPF 9 41 547.7836203419574 1093.5526877507148 2 547.7841796875 MULTI HCD FTMS 0 0 0 23140 30058.853515625 1 0 0 8 Oxidation (M) _M(Oxidation (M))PLDLFVPF_ REV__PKHD1|p.V88M|1|0.56|ENSG00000170927|chr6:52082411-52082411|C/T|missense_variant 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.8732 0 0 928.4736757651664 0 928.4736757651664 0 12.173625088058904 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8732 + + 23 + NaN NaN 120609.8 NaN 18748 4398 23140 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23150 92.65 NaN 1040200 35 0 202900 0.327 + 22341 QPLIIAVVL 9 50 483.32331685784794 964.6320807824959 2 483.3233947753906 MULTI HCD FTMS 0 0 0 23149 953281.8125 0.3375751396113899 -3 0.08541107177734375 1 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 44.40701690623563 0.04511410083598184 2 {M(Oxidation (M))|F}AVV{I|L} 5 5 49.865 0 0 5.1693 0 0 417.3033619611344 0 417.3033619611344 0 44.38039076304328 0 0 0 1.8807196863200843 0 0 0 {M(Oxidation (M))|F}AVV{I|L} 5.1693 - 69 NaN NaN 251629.2 NaN 18749 4399 23149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23151 92.655 NaN 364490 35 0 40892 0.261 + -1 IEVYCFLI 8 77 528.7749143837757 1055.5352758343513 2 528.7843627929688 MULTI HCD FTMS 0 0 0 23149 24262.69140625 0.012898722122848427 53 -1.2717132568359375 2 Carbamidomethyl (C) _IEVYC(Carbamidomethyl (C))FLI_ REV__ENSG00000173578|ENST00000309285|XCR1 18.13498045792455 0.4603629008820478 2 S{I|L}{M(Oxidation (M))|F}YQN 6 -1 37.124 0 0 3.5171 0 0 285.16942031074376 0 285.16942031074376 0 3.7542236155260014 0 0 0 0.3807196863200844 0 0.9947026752325154 0.3807196863200844 S{I|L}{M(Oxidation (M))|F}YQN 3.5171 - 280 NaN NaN 150465.3 NaN 18750 4399 23149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23152 92.658 NaN 56868 35 0 4366.2 0.261 -1 0 34 641.8826105638228 1281.7506681944456 2 641.8825073242188 MULTI HCD FTMS 0 0 0 23149 60753.703125 0.036816842072570966 50 -1.21710205078125 3 NaN NaN 2 V 1 -1 2.4743 0 0 0.19304 0 0 867.5056558426862 312.1485994928344 1179.6542553355207 0 0 0 0 0 0 0 0 0 V 0.19304 - 5 + NaN NaN 105621.3 NaN 18751 4399 23149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23153 92.662 NaN 225310 35 0 80084 0.261 + 25635 SGSDFSRTFDG 11 38 588.2506901398817 1174.4868273465634 2 588.2506713867188 MULTI HCD FTMS 0 0 0 23149 68355.1171875 0.6832454729044278 -2 0.05588531494140625 4 Unmodified _SGSDFSRTFDG_ REV__ENSG00000117595|ENST00000367021|IRF6;REV__nc|ENSG00000117595|O14896-2|IRF6 2.282774691075616 0.408909192180357 2 SA 2 -1 16.198 0 0 1.3791 0 0 0 1013.3822326230431 1013.3822326230431 12.703037561203843 0 0 0 0 0 0 0 0 SA 1.3791 - 4 + NaN NaN 139510.7 NaN 18752 4399 23149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23154 92.665 NaN 237330 35 0 40602 0.261 + 14353 LEALNITVF 9 57 510.2919629681476 1018.5693730030952 2 510.2808532714844 MULTI HCD FTMS 0 0 0 23149 22724.404296875 0.3988025942591377 3 -0.0754241943359375 5 Unmodified _LEALNITVF_ ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;nc|ENSG00000160870|P24462-2|CYP3A7 8.593279151180031 0.2858735984551981 2 TV{M(Oxidation (M))|F} 3 6 28.5 0 0 2.798 0 0 653.3736160224296 0 653.3736160224296 0 13.794934551318077 0 0 0 0.3807196863200844 0 0 0 + TV{M(Oxidation (M))|F} 2.798 + + 75 + NaN NaN 134175.1 NaN 18753 4399 23149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23155 92.668 NaN 69075 35 0 8639.7 0.261 + 3526 EIHYLVYL 8 45 525.2870049879781 NaN 0 525.2680053710938 PEAK HCD FTMS 0 0 0 23149 13086.185546875 0.5858958650177479 -5 0.15111541748046875 6 Unmodified _EIHYLVYL_ REV__ENSG00000156599|ENST00000287169|ZDHHC5;REV__ENST00000529480.1_1_11:57449153-57457721:+|nuORF;REV__nc|ENSG00000156599|Q9C0B5-2|ZDHHC5 2.577480529830294 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.6666 0 0 667.3463965952936 265.1058443658813 932.452240961175 0 0 0 0 0 0 0 0 0 {I|L} 0.6666 + + 3 + NaN NaN 108560.4 NaN 18754 4399 23149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23157 92.673 NaN 598530 35 0 44737 0.327 + -1 WSQLTMITF 9 83 571.7800130412154 1141.5454731492307 2 572.7862548828125 MULTI HCD FTMS 0 0 0 23156 256533.984375 0.6468751433172891 7 -0.20040130615234375 1 Oxidation (M) _WSQLTM(Oxidation (M))ITF_ REV__ENST00000341181.10_2_3:98234611-98234746:-|nuORF 17.11289562659939 0.2125047172822487 2 T{I|L}EH[KC]T{M(Oxidation (M))|F} 8 -1 39.039 0 0 3.4198 0 0 164.07753139173934 0 164.07753139173934 0 17.066329762921363 0 0 0 0.6549471895720984 0 0.2742275032520141 0.6382104921644451 T{I|L}EH[KC]T{M(Oxidation (M))|F} 3.4198 - 315 + NaN NaN 185167.5 NaN 18755 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23158 92.678 NaN 162860 35 0 5061.5 0.261 -1 0 90 583.8585015234585 1165.7024501137168 2 583.8589477539062 MULTI HCD FTMS 0 0 0 23156 132263.1875 0.5632305289480876 3 -0.08535003662109375 2 NaN NaN 2 W 1 -1 14.604 0 0 1.2528 0 0 961.6122992121528 0 961.6122992121528 0 11.505149978319906 0 0 0 0 0 0 0 W 1.2528 - 31 + NaN NaN 116321.5 NaN 18756 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23159 92.681 NaN 202890 35 0 10997 0.263 -1 0 64 451.93253336616567 1352.775770698697 3 451.9325866699219 MULTI HCD FTMS 0 0 0 23156 150558.140625 0.5351808270416106 8 -0.233306884765625 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.99 0 0 0.8863 0 0 1187.6977200168594 0 1187.6977200168594 0 -5.757659435244733 -5.757659435244733 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.8863 - 8 + NaN NaN 119326.2 NaN 18757 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23160 92.685 NaN 277930 35 0 22002 0.261 + 27022 SYLQYLEYL 9 57 596.3003277385549 1190.5861025439096 2 596.2998046875 MULTI HCD FTMS 0 0 0 23156 71874.0546875 0.03564605085847048 -4 0.1083526611328125 4 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 57.24910588100465 0.021429789259086996 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 73.326 0 0 6.1588 6.1588 90.444 0 0 0 4.137342758552691 65.8783628755652 4.137342758552691 12.703037561203843 0 2.4247425010840047 0 0 0.3494850021680094 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}YE{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}YE{I|L} 6.1588;5.0918;4.9396;4.1662 +;-;-;- + 513 NaN NaN 140234.7 NaN 18758 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23161 92.688 NaN 195720 35 0 23372 0.261 + -1 SSFCCLLSFL 10 61 617.283273297254 NaN 0 617.2994384765625 PEAK HCD FTMS 0 0 0 23156 16079.7294921875 0.3704026313959052 3 -0.08535003662109375 5 2 Carbamidomethyl (C) _SSFC(Carbamidomethyl (C))C(Carbamidomethyl (C))LLSFL_ REV__ENSG00000036828|ENST00000639785|CASR;REV__nc|ENSG00000036828|P41180-2|CASR 13.90604991867851 0.3282826376286837 2 {M(Oxidation (M))|F}A 2 -1 12.959 0 0 1.0514 0 0 131.09472351584037 880.37021318501 1011.4649367008503 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}A 1.0514 - 124 + NaN NaN 124923.9 NaN 18759 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23162 92.691 NaN 199790 35 0 14256 0.262 + 33626 YIVELWGSL 9 62 540.2921994164625 1078.569845899725 2 540.292724609375 MULTI HCD FTMS 0 0 0 23156 31956.3046875 0.42511904227403796 4 -0.1116180419921875 6 Unmodified _YIVELWGSL_ tr|U7SSU1|U7SSU1_FUSNUL-serineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01494PE=3SV=1 16.942295170755138 0.21397866736869717 2 [Y{I|L}]VQA{M(Oxidation (M))|F}[EP]{I|L} 9 5 + 33.768 0 0 3.1309 3.1309 85.458 0 0 0 14.499548259422859 21.37272471682025 14.499548259422859 9.208187539523756 0 0 1.2218487496163564 0 0 [Y{I|L}]VQA{M(Oxidation (M))|F}[EP]{I|L};[Y{I|L}]V[AG]A{M(Oxidation (M))|F}[EP]{I|L};[Y{I|L}]V{I|L}[WE][SG]{I|L};[Y{I|L}]S[{I|L}P][{I|L}P]YN;[Y{I|L}]V[TP][{I|L}P]YN;[Y{I|L}][TP]V[{I|L}P]YN;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P][{I|L}P]YN 3.1309;2.2771;1.9506;1.6291;1.4658;1.1867;0.21712 -;-;-;-;-;-;- 585 NaN NaN 123872.2 NaN 18760 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23163 92.695 NaN 74487 35 0 11553 0.261 + 14592 LFMDLQAVL 9 45 525.2870049879781 NaN 0 525.28662109375 PEAK HCD FTMS 0 0 0 23156 18019.39453125 0.8067659371148026 -4 0.1083526611328125 7 Unmodified _LFMDLQAVL_ ENSG00000109084|ENST00000226230|TMEM97;ENST00000582384.1_1_17:26646301-26653610:+|nuORF 6.2057823575117 0.2651744870083793 2 V 1 8 5.4846 0 0 0.52306 0 0 131.08956065779358 815.3658541315061 946.4554147892998 0 0 0 0 0 0 0 0 0 + V 0.52306 + + 10 + NaN NaN 115468.4 NaN 18761 4400 23156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23165 92.7 NaN 2689000 35 0 323480 0.327 + 16523 LTLLIHQQA 9 93 518.8101539210585 1035.6057549089169 2 518.8106689453125 MULTI HCD FTMS 0 0 0 23164 3362959.25 0.8057578360479771 -1 0.02623748779296875 1 Unmodified _LTLLIHQQA_ ENST00000570149.1_1_16:89628679-89629447:+|nuORF 16.942295170755138 0.21397866736869717 2 {I|L}R 2 8 12.933 0 0 1.2488 0 0 358.13537454087674 405.2611972306266 763.3965717715033 0 0 0 0 0 0.5 0 0 0.75 {I|L}R 1.2488 - 136 + NaN NaN 503179.3 NaN 18762 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23166 92.704 NaN 2216900 35 0 430820 0.261 + 22422 QPYGGFLDIL 10 75 561.7951575475485 1121.5757621618968 2 561.7954711914062 MULTI HCD FTMS 0 0 0 23164 2295052.75 1 0 0 2 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 134.295615338601 1.1116339284287773E-05 2 N{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 6 5 82.133 0 0 7.323 0 0 388.174120017775 0 388.174120017775 0 27.21848749616356 0 0 0 2.1861818737241734 0 0.7302046884880937 1.9604093769761874 N{M(Oxidation (M))|F}{I|L}D{I|L}{I|L} 7.323 - 676 NaN NaN 445914 NaN 18763 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23167 92.708 NaN 1171400 35 0 250160 0.261 + 5562 FLLALEPEL 9 64 522.8021507419635 1043.5897485507269 2 522.8021850585938 MULTI HCD FTMS 0 0 0 23164 552232.5 0.3271474973978435 -3 0.07878875732421875 3 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 68.08070601005525 0.009709267492204555 2 PE{I|L}A{I|L}E{I|L} 7 4 62.745 0 0 6.0124 0 0 260.13731581855626 0 260.13731581855626 0 55.270315457985916 0 0 0 2.138210492164445 0 0.3807196863200844 0 PE{I|L}A{I|L}E{I|L} 6.0124 - 291 NaN NaN 270583.1 NaN 18764 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23168 92.711 NaN 674260 35 0 46533 0.261 + 26610 SWFPDTLPGI 10 74 566.7873224637739 1131.5600919943477 2 566.7874145507812 MULTI HCD FTMS 0 0 0 23164 120727.7421875 0.8731309062041805 1 -0.0262451171875 4 Unmodified _SWFPDTLPGI_ ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF 62.57269311338072 0.03206542651389879 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[DP]T{I|L}[PG]{I|L} 10 0 + 43.552 0 0 3.8489 3.8489 88.799 0 0 0 15.433217941215087 22.49475555211346 15.433217941215087 25.740312677277192 0 1.9634679910804405 1.154901959985743 0.3494850021680094 0 + + {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[DP]T{I|L}[PG]{I|L};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}[DP][VP]V[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]HVES[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]HVQHH;{[WS]|[C(Carbamidomethyl (C)){I|L}]}YY[K{I|L}]S[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]HEVS[VS];{[WS]|[C(Carbamidomethyl (C)){I|L}]}YY[KT]V[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]HESV[VS];{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[K{I|L}]HES[TA]{I|L} 3.8489;1.5741;1.47;0.73708;0.47567;0.47299;0.45199;0.4493;0.18327 +;-;-;-;-;-;-;-;- + 1123 NaN NaN 199187.4 NaN 18765 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23169 92.714 NaN 606460 35 0 80123 0.261 + 31755 VYLPDVWTI 9 90 553.2997826032245 1104.5850122732488 2 553.301025390625 MULTI HCD FTMS 0 0 0 23164 186222.046875 0.6404598482634646 -3 0.07878875732421875 5 Unmodified _VYLPDVWTI_ ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 64.23631603340823 0.01165516075559909 2 [YV]{I|L}[DP]VWT{I|L} 9 0 + 57.475 0 0 5.2033 5.2033 90.015 0 0 0 21.896512253176823 14.774050556835178 14.774050556835178 19.018637558036673 0 1.3494850021680094 1.5228787452803376 0.28872548999643577 0 + + [YV]{I|L}[DP]VWT{I|L};[YV][VG]YYKT{I|L};[YV]{I|L}[WP][DV]T{I|L};[YV]{I|L}[DP]V{[QG]|[NA]}[KS];{[QN]|[E{I|L}]|[KN]}V{I|L}[MT]WT{I|L};[YV]{I|L}[DP]C(Carbamidomethyl (C)){I|L}{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V{I|L}[MT]{[DA]|[EG]}T{I|L};[W{M(Oxidation (M))|F}]{I|L}[WP]{I|L}M{I|L};E{I|L}{M(Oxidation (M))|F}K[DP]{I|L}M{I|L};[W{M(Oxidation (M))|F}]{I|L}{[VA]|[{I|L}G]}{I|L}DE{I|L} 5.2033;3.4815;3.2539;2.4118;2.3914;2.0358;1.5577;0.96436;0.76505;0.7424 +;-;-;-;-;-;-;-;-;- + 1097 NaN NaN 186758 NaN 18766 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23170 92.718 NaN 122190 35 0 22549 0.263 + 341 AGSWIFSHNQR 11 44 434.88228203144405 NaN 0 434.8824462890625 PEAK HCD FTMS 0 0 0 23164 50282.30078125 0.5080045350059983 -4 0.10506439208984375 6 Unmodified _AGSWIFSHNQR_ REV__ENSG00000051341|ENST00000264233|POLQ;REV__nc|ENSG00000051341|O75417-2|POLQ;REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;REV__POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 1.214830529360525 0.33867401910978034 2 G 1 -1 5.4846 0 0 0.63204 0 0 281.9322143541006 525.7666109674436 807.6988253215443 0 0 0 0 0 0 0 0 0 G 0.63204 + + 4 + NaN NaN 108719.2 NaN 18767 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23171 92.721 NaN 70826 35 0 9180 0.261 + 20498 PCVKKVMKR 9 46 544.824748300056 1087.6349436669118 2 544.82470703125 MULTI HCD FTMS 0 0 0 23164 29729.306640625 0.33397333129018447 3 -0.08538055419921875 7 Unmodified _PCVKKVMKR_ REV__nc|ENSG00000060237|Q9H4A3-7|WNK1 1.844237919475145 0.33703635659052655 2 K 1 -1 6.9897 0 0 0.64265 0 0 809.6037069499181 146.9117830865844 956.5154900365025 0 0 0 0 0 0 0 0 0 K 0.64265 + + 5 + NaN NaN 95040.5 NaN 18768 4401 23164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23173 92.726 NaN 215410 35 0 70581 0.326 + 15406 LPDIALDVF 9 36 501.778948558952 1001.543344184704 2 501.7791442871094 MULTI HCD FTMS 0 0 0 23172 171752.9375 0.2076711096037328 6 -0.18082427978515625 1 Unmodified _LPDIALDVF_ ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 30.636539890814138 0.10832830463492794 2 A{I|L}DV{M(Oxidation (M))|F} 5 4 56.454 0 0 5.6367 0 0 438.24812514472814 0 438.24812514472814 0 56.36500636031869 0 0 0 2 0 0 0 + A{I|L}DV{M(Oxidation (M))|F} 5.6367 + + 36 NaN NaN 136517.5 NaN 18769 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23174 92.73 NaN 618560 35 0 92747 0.261 -1 MPPWENIWL 9 64 601.2890662512833 1200.5635795693665 2 601.2894287109375 MULTI HCD FTMS 0 0 0 23172 235055.953125 0.4964227134038592 6 -0.18082427978515625 2 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.13340543277302316 2 EN{I|L}W{I|L} 5 -1 48.488 0 0 4.0387 0 0 527.21879775215 0 527.21879775215 0 26.064921830680703 0 0 0 1.6549471895720984 0 0 0 EN{I|L}W{I|L} 4.0387 + + 206 NaN NaN 190524.7 NaN 18770 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23175 92.734 NaN 614400 35 0 58478 0.261 + 17104 LYLEVFSML 9 83 565.7936819717847 NaN 0 565.7935791015625 PEAK HCD FTMS 0 0 0 23172 325457.6875 1 0 0 3 Oxidation (M) _LYLEVFSM(Oxidation (M))L_ ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant 74.92900055777586 0.004648267939037661 2 {M(Oxidation (M))|F}S{M(Oxidation (M))|F}VE{I|L} 6 7 41.011 0 0 3.6307 0 0 131.09864934762794 273.12400232486567 404.2226516724936 0 0 0 0 0 2.1549471895720984 0 0.2742275032520141 0 {M(Oxidation (M))|F}S{M(Oxidation (M))|F}VE{I|L} 3.6307 - 487 + NaN NaN 191359.1 NaN 18771 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23176 92.737 NaN 217290 35 0 9842.2 0.261 + 8208 GRALHRRRQ 9 84 575.3453526359716 1148.6761523387431 2 575.345458984375 MULTI HCD FTMS 0 0 0 23172 138287.578125 0.3612197010739693 5 -0.147918701171875 4 Unmodified _GRALHRRRQ_ ENST00000368061.2_1_1:160388904-160390242:+|nuORF 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F} 1 9 13.979 0 0 1.217 0 0 983.5973234586635 0 983.5973234586635 0 -4.247425010840047 -4.247425010840047 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.217 - 73 + NaN NaN 128889.8 NaN 18772 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23177 92.74 NaN 370250 35 0 55984 0.261 + -1 PQLDRGTIL 9 57 527.7989131738625 1053.583273414525 2 527.799072265625 MULTI HCD FTMS 0 0 0 23172 241617.453125 0.7083183930161217 -2 0.05248260498046875 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PQLDRGTIL_ REV__ENST00000554737.2_1_14:73524881-73525067:-|nuORF 24.020572477871973 0.15282392193088168 2 VY{I|L}N{I|L}A 6 -1 77.657 0 0 7.3707 0 0 0 377.180151488787 377.180151488787 42.6072158606037 0 0 0 0 1.774227503252014 1.6989700043360187 0 0.6549471895720984 VY{I|L}N{I|L}A 7.3707 - 251 + NaN NaN 141384.7 NaN 18773 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23178 92.744 NaN 150060 35 0 13426 0.261 + 6498 FPIPGEPGFPL 11 46 585.8134525913252 1169.6123522494504 2 585.8135986328125 MULTI HCD FTMS 0 0 0 23172 80486.4765625 0.15499270491164502 27 -0.644927978515625 6 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 13.042465956692817 0.3434429782671734 2 P{I|L} 2 9 25.969 0 0 2.2203 0 0 941.4655574903785 0 941.4655574903785 0 7.385606273598313 0 0 0 0.5 0 0 0 + P{I|L} 2.2203 + + 90 NaN NaN 119578.2 NaN 18774 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23179 92.747 NaN 174620 35 0 16447 0.261 -1 TCLQFYNI 8 50 529.7509341855944 1057.4873154379886 2 529.7508544921875 MULTI HCD FTMS 0 0 0 23172 64188.9453125 1 0 0 7 Carbamidomethyl (C) _TC(Carbamidomethyl (C))LQFYNI_ ENSG00000125207|ENST00000245255|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;nc|ENSG00000125207|Q96J94-3|PIWIL1 10.823927491677226 0.514154816617796 2 A{I|L} 2 -1 22.959 0 0 2.1711 0 0 855.3548323858541 0 855.3548323858541 0 12.781512503836437 0 0 0 0.5 0 0 0 A{I|L} 2.1711 - 15 NaN NaN 121199.3 NaN 18775 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23180 92.75 NaN 295020 35 0 104120 0.261 + 14318 LDMIERCI 8 43 496.74923411968916 991.4839153061783 2 496.7497253417969 MULTI HCD FTMS 0 0 0 23172 31609.65234375 0.6199779316761507 1 -0.032867431640625 8 Unmodified _LDMIERCI_ ENSG00000070748|ENST00000337653|CHAT;nc|ENSG00000070748|P28329-2|CHAT;nc|ENSG00000070748|P28329-3|CHAT 4.75600775471527 0.5349361699807423 2 D{I|L} 2 6 14.776 0 0 1.4903 0 0 114.08755377856046 646.2597139947874 760.3472677733479 0 0 0 0 0 0 0 0.3807196863200844 0 D{I|L} 1.4903 - 17 + NaN NaN 156418.3 NaN 18776 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23181 92.754 NaN 160760 35 0 15347 0.261 -1 YSIGLIMKH 9 48 539.2920048122929 NaN 0 539.3031005859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Oxidation (M) _YSIGLIM(Oxidation (M))KH_ ENSG00000135108|ENST00000622495|FBXO21;ENST00000547806.1_1_12:117592072-117595814:-|nuORF;nc|ENSG00000135108|O94952|FBXO21 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 5.4846 0 0 0.50945 0 0 713.3898284140511 247.07180200748283 960.4616304215339 0 0 0 0 0 0 0 0 0 {I|L} 0.50945 + + 27 + NaN NaN 118485.9 NaN 18777 4402 23172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23183 92.759 NaN 186000 35 0 28643 0.326 + 23407 RLHRPPVI 8 51 494.31419517436046 986.613837415521 2 494.314453125 MULTI HCD FTMS 0 0 0 23182 85713.953125 0.23715430210566416 1 -0.02626800537109375 1 Unmodified _RLHRPPVI_ ENSG00000166033|ENST00000368984|HTRA1 9.347437153973935 0.5250182646323369 2 [QP]{I|L}{I|L}{I|L}AV 7 7 22.695 0 0 2.3003 0 0 0 249.1213778131469 249.1213778131469 15.705707356182117 0 0 0 0 0 0 0 0 [QP]{I|L}{I|L}{I|L}AV 2.3003 - 41 + NaN NaN 114551.2 NaN 18778 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23184 92.763 NaN 417170 35 0 67354 0.261 + 11452 IYQEVWNLF 9 65 606.30825604803 1210.6019591628599 2 606.3085327148438 MULTI HCD FTMS 0 0 0 23182 215491.078125 0.2426449941278606 7 -0.1937408447265625 2 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 43.981846655682396 0.04706587046877104 2 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F} 10 2 + 76.068 0 0 6.2835 6.2835 87.099 0 0 0 5.764837301042718 50.12578788640525 5.764837301042718 6.5321251377534395 0 2.642159058960253 0 0.2302046884880938 0 [Y{I|L}]GAEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWN{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]QEVWGG{I|L}{M(Oxidation (M))|F};[Y{I|L}]G[W{I|L}]{[DA]|[EG]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}][AG]EVWN{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[YQ]VWN{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[WY]{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[DS]|[MA]|[CV]|TT}{[QN]|[E{I|L}]|[KN]}N{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAEV[{M(Oxidation (M))|F}E][RK] 6.2835;5.7439;5.5265;4.9833;3.7554;3.5492;3.5329;3.4645;3.4267;2.8101 -;+;-;-;-;-;-;-;-;- + 693 NaN NaN 162249.4 NaN 18779 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23185 92.767 NaN 125500 35 0 20532 0.264 + -1 LCKCGASG 8 41 419.1834313272922 836.3523097213845 2 419.1834411621094 MULTI HCD FTMS 0 0 0 23182 42497.94140625 0.07705147157308878 7 -0.1937408447265625 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))KCGASG_ REV__ENST00000547035.5_1_12:53887565-53887598:-|nuORF 5.230669730166228 0.5342319408533849 2 {[WT]|[RM]}{I|L} 3 -1 9.4541 0 0 1.1304 0 0 0 433.1201374403876 433.1201374403876 2.4643735102927007 0 0 0 0 0 0 0 0.28872548999643577 {[WT]|[RM]}{I|L} 1.1304 - 10 NaN NaN 108052.1 NaN 18780 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23186 92.77 NaN 132540 35 0 8766.8 0.261 + -1 TQKRKERRRA 10 58 457.6080627048665 1369.8023587147995 3 457.60821533203125 MULTI HCD FTMS 0 0 0 23182 52698.11328125 0.43016357782693165 15 -0.37023162841796875 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TQKRKERRRA_ REV__ENST00000430627.6_1_17:37618034-37618070:+|nuORF 0.5631705045366581 0.4723227536457635 2 [EP]E 3 -1 7.6895 0 0 0.56136 0 0 0 1011.642055330287 1011.642055330287 0.2422750325201406 0 0 0 0 0 0 0.3252574989159953 0 [EP]E 0.56136 - 17 NaN NaN 120857.3 NaN 18781 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23187 92.773 NaN 176010 35 0 49778 0.261 -1 CFAVCIILF 9 43 543.2792860628258 NaN 0 543.263916015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))FAVCIILF_ ENST00000468227.5_1_3:132387661-132390776:+|nuORF 5.230669730166228 0.26989974671959066 2 G 1 -1 5.4846 0 0 0.5057 0 0 100.08613253017752 924.416517931904 1024.5026504620814 0 0 0 0 0 0 0 0 0 G 0.5057 - 1 + NaN NaN 129472.7 NaN 18782 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23188 92.777 NaN 112140 35 0 15174 0.261 + 16272 LQKVALVLV 9 43 491.83664444409266 NaN 0 491.8365783691406 PEAK HCD FTMS 0 0 0 23182 7023.5068359375 0.1730656447488282 1 -0.02626800537109375 6 Unmodified _LQKVALVLV_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 2.0597508629832335 0.2852655770354268 2 V 1 -1 6.9897 0 0 0.71203 0 0 148.12072436631894 731.4484060121011 879.5691303784201 0 0 0 0 0 0 0 0 0 V 0.71203 + + 6 + NaN NaN 119126.9 NaN 18783 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23189 92.78 NaN 183660 35 0 60028 0.261 + -1 SNFQCLCIL 9 51 549.2580218566509 1096.5014907801017 2 549.2584228515625 MULTI HCD FTMS 0 0 0 23182 43269.48828125 0.4775441917428272 -1 0.032867431640625 7 Carbamidomethyl (C) _SNFQC(Carbamidomethyl (C))LCIL_ REV__MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense 2.0597508629832335 0.3354026079994024 2 N 1 -1 4.6041 0 0 0.41989 0 0 832.5134364361548 146.92568384342033 979.4391202795751 0 0 0 0 0 0 0 0 0 N 0.41989 + + 6 + NaN NaN 123125.1 NaN 18784 4403 23182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23191 92.785 NaN 1021900 35 0 209020 0.326 + 22342 QPLIIAVVL 9 46 483.32331685784794 964.6320807824959 2 483.3234558105469 MULTI HCD FTMS 0 0 0 23190 747204.25 0.2645991727781693 2 -0.05254364013671875 1 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 53.57557251787612 0.02656881086235134 2 AVV{I|L} 4 5 39.469 0 0 4.0916 0 0 564.3637570500741 0 564.3637570500741 0 32.47933455448525 0 0 0 1.3807196863200843 0 0 0 + AVV{I|L} 4.0916 + + 63 NaN NaN 242759.1 NaN 18785 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23192 92.789 NaN 610160 35 0 32414 0.261 -1 0 100 437.25721486719715 1308.7498152017915 3 437.2572326660156 MULTI HCD FTMS 0 0 0 23190 427872.5625 0.9607246481655717 1 -0.03289794921875 2 NaN NaN 2 N{[HG]|PP}N 4 -1 17.039 0 0 1.3019 0 0 868.4876576154312 0 868.4876576154312 0 5.076381522919391 0 0 0 0.9247425010840047 0 0 0 N{[HG]|PP}N 1.3019 - 185 NaN NaN 188082.3 NaN 18786 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23193 92.793 NaN 905010 35 0 227960 0.261 -1 0 70 413.28823999729144 824.5619270613829 2 413.2883605957031 MULTI HCD FTMS 0 0 0 23190 352547.0625 0.7920986351322431 -2 0.05913543701171875 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.8779 0 0 659.483266027983 0 659.483266027983 0 3.3175623520757824 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.8779 - 27 + NaN NaN 222762.6 NaN 18787 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23194 92.796 NaN 624440 35 0 111310 0.261 -1 YNSTRCLEL 9 70 578.2785790859332 NaN 0 578.29150390625 PEAK HCD FTMS 0 0 0 23190 15551.935546875 1 0 0 4 Carbamidomethyl (C) _YNSTRC(Carbamidomethyl (C))LEL_ ENSG00000101638|ENST00000315087|ST8SIA5;ENST00000588155.1_1_18:44272124-44336471:-|nuORF;ENST00000590497.5_1_18:44266209-44301398:-|nuORF;nc|ENSG00000101638|O15466-2|ST8SIA5 15.847184025352803 0.21527282152051216 2 E{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 6 -1 29.418 0 0 2.548 0 0 131.06954123833367 257.11399255924067 388.18353379757434 0 0 0 0 0 0 0 0 0.7302046884880937 E{M(Oxidation (M))|F}{I|L}N{I|L}{M(Oxidation (M))|F} 2.548 - 146 + NaN NaN 195931 NaN 18788 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23195 92.8 NaN 126830 35 0 8344.2 0.261 -1 0 47 633.3543917641165 632.3471152975164 1 633.369140625 MULTI HCD FTMS 0 0 0 23190 9412.5322265625 0.13346254072238567 15 -0.36985015869140625 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116615.9 NaN 18789 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23196 92.803 NaN 155270 35 0 28923 0.261 + 28943 TWYPVSIPAF 10 47 590.8054365670644 1179.5963202009286 2 590.8064575195312 MULTI HCD FTMS 0 0 0 23190 83422.21875 0.055217367094547956 29 -0.6804046630859375 6 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 39.94969957227396 0.1458432724694501 2 S{I|L}[PA]{M(Oxidation (M))|F} 5 5 40.713 0 0 3.4515 0 0 646.3111510760207 0 646.3111510760207 0 33.36696871556164 0 0 0 1.4247425010840047 0 0.4247425010840047 0 + S{I|L}[PA]{M(Oxidation (M))|F} 3.4515 + + 41 NaN NaN 110217.9 NaN 18790 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23197 92.806 NaN 237710 35 0 31498 0.261 + -1 YNHCDPYLY 9 52 622.7557950029122 1243.4970370726244 2 622.7562255859375 MULTI HCD FTMS 0 0 0 23190 125213.671875 1 0 0 7 Carbamidomethyl (C) _YNHC(Carbamidomethyl (C))DPYLY_ REV__ENSG00000106302|ENST00000223026|HYAL4 3.944395688203298 0.32111559684428237 2 Y{I|L} 2 -1 16.722 0 0 1.3447 0 0 949.337591095915 0 949.337591095915 0 9.274400170273578 0 0 0 0.4247425010840047 0 0 0 Y{I|L} 1.3447 + + 24 NaN NaN 138122.8 NaN 18791 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23198 92.81 NaN 50675 35 0 4478.9 0.262 -1 ICKKCIYP 8 39 512.7699528399272 1023.5253527466544 2 512.7708129882812 MULTI HCD FTMS 0 0 0 23190 6584.96533203125 0.041043576330945575 8 -0.2166900634765625 8 Carbamidomethyl (C) _IC(Carbamidomethyl (C))KKCIYP_ ENSG00000171307|ENST00000393760|ZDHHC16;ENST00000459777.5_1_10:99206080-99216645:+|nuORF;ENST00000462924.5_1_10:99206088-99212597:+|nuORF;ENST00000466895.5_1_10:99206080-99216645:+|nuORF;nc|ENSG00000171307|Q969W1-2|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-4|ZDHHC16 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.53585 0 0 600.3326780413794 273.11017786197505 873.4428559033545 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.53585 - 4 + NaN NaN 109558.1 NaN 18792 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23199 92.813 NaN 54334 35 0 5179.1 0.261 + 14990 LLLCAHCH 8 36 455.22549421635205 NaN 0 455.2251281738281 PEAK HCD FTMS 0 0 0 23190 35276.67578125 0.8067542627867522 28 -0.65118408203125 9 Unmodified _LLLCAHCH_ ENST00000495786.1_1_19:55084740-55084827:+|nuORF 0.7936320650641473 0.38822285293237185 2 Q 1 8 0.088644 0 0 0.0097578 0 0 469.55690166336973 307.79306970767817 777.3499713710479 0 0 0 0 0 0 0 0 0 Q 0.0097578 - 1 + NaN NaN 96436.1 NaN 18793 4404 23190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23201 92.818 NaN 427180 35 0 34024 0.327 + 11453 IYQEVWNLF 9 85 606.30825604803 1210.6019591628599 2 607.2913208007812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _IYQEVWNLF_ ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF 19.361941925380144 0.1930734562688509 2 [Y{I|L}]SQY{I|L}E 7 6 40.485 0 0 3.3442 0 0 0 311.15326466506616 311.15326466506616 11.763867177080485 0 0 0 0 0 1.2218487496163564 1.3076556684809653 0.3252574989159953 [Y{I|L}]SQY{I|L}E 3.3442 - 2992 NaN NaN 172124.5 NaN 18794 4405 23200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23202 92.822 NaN 340950 35 0 47780 0.262 + 32306 VYVATFLGF 9 69 508.77635013627884 NaN 0 508.77630615234375 PEAK HCD FTMS 0 0 0 23200 41559.0546875 0.2265636273220225 1 -0.01964569091796875 2 Unmodified _VYVATFLGF_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 129.2004930540761 2.5298827589179317E-13 2 G{I|L}{M(Oxidation (M))|F}TAV 6 8 62.242 0 0 6.129 0 0 165.08030400166325 259.1074312799438 424.18773528160705 0 0 0 0 0 2.8494850021680094 0 1.4361818737241734 0 G{I|L}{M(Oxidation (M))|F}TAV 6.129 - 668 + NaN NaN 147226.7 NaN 18795 4405 23200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23203 92.826 NaN 248210 35 0 21146 0.261 + 2814 DYISHFLTF 9 62 571.7800130412154 1141.5454731492307 2 572.7859497070312 MULTI HCD FTMS 0 0 0 23200 56775.8671875 0.1431658160744514 12 -0.30141448974609375 3 Unmodified _DYISHFLTF_ ENSG00000114841|ENST00000420323|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-6|DNAH1;nc|ENSG00000114841|Q9P2D7-8|DNAH1 10.823927491677226 0.26684000660059787 2 {I|L}T{M(Oxidation (M))|F} 3 6 21.229 0 0 1.8596 0 0 762.3360442935651 0 762.3360442935651 0 0.2596217904876852 0 0 0 0.6307196863200843 0 0 0 + {I|L}T{M(Oxidation (M))|F} 1.8596 + + 35 + NaN NaN 139349.4 NaN 18796 4405 23200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23204 92.829 NaN 49479 35 0 7492.5 0.261 -1 0 32 641.8826105638228 1281.7506681944456 2 641.8826293945312 MULTI HCD FTMS 0 0 0 23200 5265.81640625 0.00319109323448437 56 -1.2195968627929688 4 NaN NaN 2 H 1 -1 6.9897 0 0 0.54532 0 0 671.4050393876081 470.2528170221313 1141.6578564097395 0 0 0 0 0 0 0 0 0 H 0.54532 - 1 + NaN NaN 102922.8 NaN 18797 4405 23200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23205 92.833 NaN 129860 35 0 27508 0.261 + 15366 LPDEELQWVF 10 36 638.3172160128993 1274.6198790925985 2 638.3169555664062 MULTI HCD FTMS 0 0 0 23200 7033.78955078125 0.11489583954131764 -2 0.05916595458984375 5 Unmodified _LPDEELQWVF_ ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-2|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-4|SIGMAR1 7.608950283845883 0.4350283211712914 2 QWV{M(Oxidation (M))|F} 4 6 35.433 0 0 2.7799 0 0 696.3356800763687 0 696.3356800763687 0 32.33410649039925 0 0 0 0.5 0 0 0 + QWV{M(Oxidation (M))|F} 2.7799 + + 11 NaN NaN 126373 NaN 18798 4405 23200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23207 92.838 NaN 710310 35 0 167970 0.327 + 16525 LTLLLVAYM 9 68 518.8101539210585 1035.6057549089169 2 518.810546875 MULTI HCD FTMS 0 0 0 23206 276516.3125 0.06625271644072589 4 -0.11492919921875 1 Unmodified _LTLLLVAYM_ ENSG00000179002|ENST00000375371|TAS1R2 5.230669730166228 0.3113646817964458 2 R 1 9 10.362 0 0 1.0005 0 0 471.2194156528606 405.26116422123346 876.480579874094 0 0 0 0 0 0.5 0 0 0.28872548999643577 R 1.0005 - 43 + NaN NaN 196930.8 NaN 18799 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23208 92.842 NaN 2989100 35 0 342470 0.261 + 27023 SYLQYLEYL 9 88 596.3003277385549 1190.5861025439096 2 596.300537109375 MULTI HCD FTMS 0 0 0 23206 1222467.375 0.6062846240070197 2 -0.06914520263671875 2 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 223.81148253027484 4.831502538880383E-24 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 114.98 0 0 9.6571 9.6571 89.661 0 0 0 0.7795501485934864 9.018637558036673 0.7795501485934864 0.7795501485934864 0 2.8494850021680094 0 2.341129063296272 1.4476212463643423 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};[Y{I|L}]SQY{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}E{I|L}Y;[Y{I|L}]SQY{I|L}E{I|L}Y;[Y{I|L}]QSY{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}Q{I|L}Y{I|L}EY{I|L};[Q{I|L}]YSY{I|L}EY{I|L};[Y{I|L}]QSY{I|L}E{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}YQ{I|L}EY{I|L};[Y{I|L}]SYQ{I|L}EY{I|L} 9.6571;9.5916;8.8996;8.8341;8.7517;8.327;8.3125;7.9942;7.8963;7.8308 +;-;-;-;-;-;-;-;-;- + 4218 NaN NaN 543409.2 NaN 18800 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23209 92.846 NaN 2674100 35 0 598370 0.261 + 5563 FLLALEPEL 9 83 522.8021507419635 1043.5897485507269 2 522.8020629882812 MULTI HCD FTMS 0 0 0 23206 733254.75 0.4343867056313806 2 -0.06914520263671875 3 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 100.37149154755038 0.004254194004462789 2 PE{I|L}A{I|L}E{I|L} 7 4 68.506 0 0 6.5644 0 0 260.1370549482109 0 260.1370549482109 0 41.63934099835714 0 0 0 2.1307196863200843 0 0.4247425010840047 0 PE{I|L}A{I|L}E{I|L} 6.5644 - 686 NaN NaN 508059.7 NaN 18801 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23210 92.849 NaN 648700 35 0 162970 0.261 + 22423 QPYGGFLDIL 10 56 561.7951575475485 1121.5757621618968 2 561.7952270507812 MULTI HCD FTMS 0 0 0 23206 321405.1875 0.14004261448892624 5 -0.14455413818359375 4 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 78.7280429016045 0.0072433801744089844 2 M[C(Carbamidomethyl (C))N]{I|L}D{I|L}{I|L} 7 6 60.622 0 0 5.4051 0 0 244.17874343086095 0 244.17874343086095 0 17.741822736656587 0 0 0 0.8494850021680094 0 0.7302046884880937 1.610924374808178 M[C(Carbamidomethyl (C))N]{I|L}D{I|L}{I|L} 5.4051 - 241 NaN NaN 205619.7 NaN 18802 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23211 92.852 NaN 491880 35 0 147290 0.261 + 9844 HYSLFPLLF 9 41 568.8105290678333 1135.6065052024665 2 568.8106689453125 MULTI HCD FTMS 0 0 0 23206 106167.1328125 0.41136810068706686 1 -0.0362396240234375 5 Unmodified _HYSLFPLLF_ ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}[{I|L}P]{I|L}{M(Oxidation (M))|F} 5 4 39.208 0 0 3.4526 0 0 500.23792717687894 0 500.23792717687894 0 32.21848749616356 0 0 0 1.8494850021680094 0 0 0 + {M(Oxidation (M))|F}[{I|L}P]{I|L}{M(Oxidation (M))|F} 3.4526 + + 55 + NaN NaN 173544.3 NaN 18803 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23212 92.855 NaN 747620 35 0 92895 0.261 + 24025 RWLPPFVEL 9 77 578.8289405582309 1155.6433281832617 2 578.8294067382812 MULTI HCD FTMS 0 0 0 23206 21937.3125 0.0675081407147096 18 -0.405364990234375 6 Unmodified _RWLPPFVEL_ ENSG00000166189|ENST00000299238|HPS6 24.020572477871973 0.15282392193088168 2 [YN]{I|L}P[VP]{I|L}D{I|L} 9 5 46.934 0 0 4.0613 0 0 0 128.07177706572693 128.07177706572693 -5.0147128475507685 0 -5.0147128475507685 0 0 0.8851518780601924 1.3010299956639813 0 0.6989700043360187 [YN]{I|L}P[VP]{I|L}D{I|L} 4.0613 - 378 NaN NaN 213345.4 NaN 18804 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23213 92.859 NaN 624920 35 0 119410 0.261 + 10126 IFLMWPLF 8 74 533.7929519312472 1065.5713509292943 2 533.79345703125 MULTI HCD FTMS 0 0 0 23206 87985.9296875 0.40485442142321465 2 -0.06914520263671875 7 Unmodified _IFLMWPLF_ REV__ENSG00000151881|ENST00000397080|TMEM267;REV__ENST00000511525.1_1_5:43446326-43483989:-|nuORF;REV__PAIP1-C5orf28|1|fusion;REV__PAIP1-C5orf28|2|fusion;REV__PAIP1-C5orf28|3|fusion 32.45364647766026 0.3278715449852315 2 {I|L}{M(Oxidation (M))|F}{I|L}A{I|L}E[DV]{M(Oxidation (M))|F} 9 -1 + 66.865 0 0 6.275 6.275 91.199 0 0 0 51.38025969857303 8.952424927286842 8.952424927286842 15.199178382953065 0 2.004432191740108 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}{I|L}A{I|L}E[DV]{M(Oxidation (M))|F};{I|L}{M(Oxidation (M))|F}{I|L}A[YT]PE{I|L};{[QN]|[E{I|L}]|[KN]}HE{I|L}A{I|L}E{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}A[YT]PE{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}[YT]PE{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}[YT]PE{I|L};[EP][Q{I|L}][Q{I|L}]PE{I|L};{[QN]|[E{I|L}]|[KN]}[QP][Q{I|L}]PE{I|L} 6.275;4.8486;4.2993;3.9725;3.2914;3.1191;1.9848;1.7023 -;-;-;-;-;-;-;- 410 + NaN NaN 185046 NaN 18805 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23214 92.862 NaN 266240 35 0 49099 0.263 -1 0 49 405.1188912146128 808.2232294960256 2 405.1189270019531 MULTI HCD FTMS 0 0 0 23206 12429.76171875 0.0654832354040345 27 -0.6278610229492188 8 NaN NaN 2 S 1 -1 6.9897 0 0 0.86482 0 0 586.1227789118444 132.04549585513908 718.1682747669835 0 0 0 0 0 0 0 0 0 S 0.86482 - 10 + NaN NaN 146192.7 NaN 18806 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23215 92.866 NaN 207160 35 0 30563 0.261 + 32632 WLWCHGGAAIF 11 51 630.8033692712828 1259.5921856093655 2 630.8034057617188 MULTI HCD FTMS 0 0 0 23206 41910.31640625 0.14016289141471147 9 -0.23606109619140625 9 Unmodified _WLWCHGGAAIF_ ENST00000609742.2_1_10:33177235-33177406:-|nuORF 6.723162845929126 0.38943515815631113 2 {I|L}{M(Oxidation (M))|F} 2 9 25.969 0 0 2.0617 0 0 981.4296983234739 0 981.4296983234739 0 13.764100213633766 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.0617 + + 26 NaN NaN 124219.8 NaN 18807 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23216 92.869 NaN 292890 35 0 30272 0.261 -1 MPPWENIWL 9 49 601.2890662512833 1200.5635795693665 2 600.7896118164062 MULTI HCD FTMS 0 0 0 23206 106575.4296875 0.569559969768552 2 -0.06914520263671875 10 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 6.723162845929126 0.3000504726104499 2 AS{I|L}W 4 -1 24.597 0 0 2.0488 0 0 132.08924795956233 608.2129000299436 740.302147989506 0 0 0 0 0 0 0 0.805462187404089 0 AS{I|L}W 2.0488 - 24 + NaN NaN 139378.5 NaN 18808 4406 23206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23218 92.874 NaN 966680 35 0 119830 0.327 + 31617 VYINLANLI 9 64 516.8082480172316 1031.601943101263 2 516.8082275390625 MULTI HCD FTMS 0 0 0 23217 445305.75 0.19026350920766505 3 -0.0786895751953125 1 Unmodified _VYINLANLI_ ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 133.70201269244603 0.0003804610509361063 2 [YV]{I|L}N{I|L}AN{I|L}{I|L} 9 0 + 102.67 0 0 9.9529 9.9529 94.123 0 0 0 14.451687839877891 16.478174818886373 14.451687839877891 9.208187539523749 0 2.6549471895720984 1.2218487496163564 0 1.2302046884880937 + + [YV]{I|L}N{I|L}AN{I|L}{I|L};[YV]{I|L}N{I|L}AGG{I|L}{I|L};[YV]{I|L}GG{I|L}AN{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YV]{I|L}AN{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YV]{I|L}AGG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[YV]AN{I|L}{I|L};[YV]{I|L}GG{I|L}AGG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}A{I|L}[YV]N{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}[YV]AGG{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}A[YV]N{I|L}{I|L} 9.9529;9.0603;8.6912;8.552;7.6594;7.313;6.9794;6.4976;6.4204;6.0351 +;-;-;-;-;-;-;-;-;- + 748 NaN NaN 251954.5 NaN 18809 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23219 92.878 NaN 1108600 35 0 224820 0.261 + 30644 VPDPFFVEL 9 56 531.7795897272732 1061.5446265213463 2 531.7791137695312 MULTI HCD FTMS 0 0 0 23217 553121.6875 0.368096230663706 -6 0.174163818359375 2 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 58.678817012210395 0.019429721296335044 2 {M(Oxidation (M))|F}VE{I|L} 4 5 44.993 0 0 4.2384 0 0 555.2684861377168 0 555.2684861377168 0 19.075221787320515 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.2384 + + 286 NaN NaN 258706.4 NaN 18810 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23220 92.882 NaN 233780 35 0 40070 0.261 + 31756 VYLPDVWTI 9 55 553.2997826032245 1104.5850122732488 2 553.300537109375 MULTI HCD FTMS 0 0 0 23217 104873.84375 0.36068493060876355 3 -0.0786895751953125 3 Unmodified _VYLPDVWTI_ ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 39.957323273324995 0.06554068735427583 2 WT{I|L} 3 6 30.674 0 0 2.777 0 0 686.3634536384948 0 686.3634536384948 0 -0.26802492411967194 -0.26802492411967194 0 0 0.9247425010840047 0 0 0 + WT{I|L} 2.777 + + 149 NaN NaN 121642.8 NaN 18811 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23221 92.885 NaN 145610 35 0 10001 0.262 + 9557 HRHTHVVRRR 10 53 451.93253336616567 1352.775770698697 3 451.9325256347656 MULTI HCD FTMS 0 0 0 23217 89562.5390625 0.318363082384243 15 -0.33716583251953125 4 Unmodified _HRHTHVVRRR_ REV__ENST00000460049.6_1_14:24033375-24036327:-|nuORF;REV__ENST00000535852.6_1_14:24028960-24035624:-|nuORF;REV__ENST00000553629.5_1_14:24035015-24036984:-|nuORF;REV__ENST00000556743.5_1_14:24034808-24036327:-|nuORF;REV__ENST00000557619.5_1_14:24035015-24036327:-|nuORF 0.6976657623105312 0.47161084886498755 2 [YV][RK]QQ 6 -1 9.7096 0 0 0.71776 0 0 0 547.331165556372 547.331165556372 8.115838253545961 0 0 0 0 0 1.154901959985743 0 0 [YV][RK]QQ 0.71776 - 46 NaN NaN 102897.2 NaN 18812 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23222 92.888 NaN 291160 35 0 20140 0.261 + 497 AMRYKLKKFVN 11 61 466.60794798019344 1396.8020145407804 3 466.60784912109375 MULTI HCD FTMS 0 0 0 23217 151565.609375 1 0 0 5 Unmodified _AMRYKLKKFVN_ sp|P03192|BMRF2_EBVB9ProteinBMRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF2PE=1SV=1 1.214830529360525 0.41359283248740725 2 V{M(Oxidation (M))|F} 2 10 10.969 0 0 0.7853 0 0 595.3961544686537 552.2452379818665 1147.64139245052 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.7853 - 20 + NaN NaN 139271.1 NaN 18813 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23223 92.892 NaN 211510 35 0 46908 0.261 + 6118 FPEGLFYEF 9 45 574.7685982649667 1147.5226435967334 2 574.76904296875 MULTI HCD FTMS 0 0 0 23217 121068.8359375 0.03704627713770312 -30 0.844573974609375 6 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 57.735 0 0 5.0313 0 0 543.2697654582694 0 543.2697654582694 0 43.79030240109685 0 0 0 2 0 0.8807196863200843 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5.0313 + + 74 + NaN NaN 122782.5 NaN 18814 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23224 92.895 NaN 104870 35 0 9132.3 0.261 + 6499 FPIPGEPGFPL 11 43 585.8134525913252 1169.6123522494504 2 585.8131103515625 MULTI HCD FTMS 0 0 0 23217 65476.265625 0.12608756091902767 32 -0.739044189453125 7 Unmodified _FPIPGEPGFPL_ ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF 8.745405648335112 0.3805662881914433 2 P{I|L} 2 9 25.969 0 0 2.2203 0 0 941.4637243815467 0 941.4637243815467 0 17.11758134947864 0 0 0 0.5 0 0 0 + P{I|L} 2.2203 + + 57 NaN NaN 127355.8 NaN 18815 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23225 92.898 NaN 235280 35 0 41689 0.261 + 31284 VWFNIGSVDTF 11 50 642.8165521351833 1283.6185513371665 2 642.8164672851562 MULTI HCD FTMS 0 0 0 23217 118797.890625 0.4172382172232356 -4 0.11505126953125 8 Unmodified _VWFNIGSVDTF_ ENSG00000141385|ENST00000269143|AFG3L2 114.4966697963812 0.018664104901941023 2 {[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}GSVDT{M(Oxidation (M))|F} 11 0 + 105.04 0 0 8.1833 8.1833 91.437 0 0 0 7.367585652254192 95.57882975038464 7.367585652254192 9.128498242811006 0 3.2302046884880937 0 0.3494850021680094 1.055462187404089 + + {[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}GSVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{I|L}GSVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VDT{M(Oxidation (M))|F};{[YC]|[HE]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[YV]VDT{M(Oxidation (M))|F} 8.1833;7.4722;6.033;5.319;1.926 +;-;-;-;- + 497 NaN NaN 120777.9 NaN 18816 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23226 92.902 NaN 182510 35 0 28203 0.264 + 21209 PQQFRNDNRQ 10 43 434.88228203144405 NaN 0 434.88232421875 PEAK HCD FTMS 0 0 0 23217 64896.1875 0.6556493446475903 2 -0.0458221435546875 9 Unmodified _PQQFRNDNRQ_ ENSG00000156304|ENST00000286835|SCAF4;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119531.4 NaN 18817 4407 23217 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23228 92.907 NaN 639570 35 0 71239 0.327 + 5092 FEFEPFLQ 8 76 528.7556106842984 1055.4966684353967 2 528.755615234375 MULTI HCD FTMS 0 0 0 23227 338838.21875 0.13244770630493133 -5 0.14795684814453125 1 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 61.357469665136826 0.05745689244596827 2 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 51.96 0 0 4.9228 4.9228 87.561 0 0 0 2.584011684580929 33.38574484058496 2.584011684580929 9.262137858390815 0 1.9564608101803795 0 0 0 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE[Q{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[YE]{I|L};[{M(Oxidation (M))|F}E]W{[VA]|[{I|L}G]}[YE]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[YE]{I|L};[{M(Oxidation (M))|F}E]{I|L}[EP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}K[YV]HHM;[YV]{[CP]|[EA]}[W{I|L}]E{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}[EP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 4.9228;4.0453;2.5771;2.477;2.4541;2.1232;0.58093;0.50062;0.41709;0.22708 -;-;-;-;-;-;-;-;-;- 565 NaN NaN 191921.7 NaN 18818 4408 23227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23229 92.911 NaN 532310 35 0 56745 0.261 + 6304 FPFPVTVSL 9 57 503.78403799897285 1005.5535230647457 2 503.7842712402344 MULTI HCD FTMS 0 0 0 23227 99492.109375 0.15266490435964797 -5 0.14795684814453125 2 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 74.42276476219924 0.007657080072768255 2 TVS{I|L} 4 5 49.68 0 0 4.9406 0 0 587.3102386619138 0 587.3102386619138 0 36.18562527100117 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + TVS{I|L} 4.9406 + + 74 NaN NaN 188358.7 NaN 18819 4408 23227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23230 92.915 NaN 241240 35 0 59831 0.261 + 30623 VPDFSFPYL 9 49 542.7704423831382 1083.5263318330763 2 542.7701416015625 MULTI HCD FTMS 0 0 0 23227 81301.8203125 0.3980891125233757 -5 0.14795684814453125 3 Unmodified _VPDFSFPYL_ REV__ENSG00000042781|ENST00000307340|USH2A;REV__nc|ENSG00000042781|O75445-3|USH2A 14.838274106304384 0.23215694253501695 2 VPD 3 -1 34.45 0 0 3.1795 0 0 0 769.3534122798188 769.3534122798188 15.320749975152733 0 0 0 0 0.8252574989159953 0 0 0 VPD 3.1795 + + 40 + NaN NaN 142408.5 NaN 18820 4408 23227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23232 92.92 NaN 488010 35 0 28023 0.327 -1 0 101 437.25721486719715 1308.7498152017915 3 437.25738525390625 MULTI HCD FTMS 0 0 0 23231 386245.3125 0.8672568060663245 6 -0.15399932861328125 1 NaN NaN 2 {[HG]|PP}N{[HG]|PP}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVQ 10 -1 13.592 0 0 1.0386 0 0 0 217.10825525455314 217.10825525455314 6.60273743745762 0 0 0 0 1.524227503252014 0 0.4247425010840047 0 {[HG]|PP}N{[HG]|PP}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VVQ 1.0386 - 84 + NaN NaN 164678.1 NaN 18821 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23233 92.924 NaN 761580 35 0 205210 0.261 -1 0 69 413.28823999729144 824.5619270613829 2 413.2883605957031 MULTI HCD FTMS 0 0 0 23231 333712.65625 0.7497817104687419 3 -0.08208465576171875 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.7711 0 0 659.4831134400923 0 659.4831134400923 0 1.635124704151563 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.7711 - 33 + NaN NaN 204563.8 NaN 18822 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23234 92.928 NaN 433130 35 0 76417 0.261 + 22343 QPLIIAVVL 9 51 483.32331685784794 964.6320807824959 2 483.3233947753906 MULTI HCD FTMS 0 0 0 23231 203770.421875 0.07215896465361857 7 -0.17024993896484375 3 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 36.04419817259434 0.08350412372117409 2 AVV{I|L} 4 5 39.157 0 0 4.0592 0 0 564.3622303693375 0 564.3622303693375 0 32.1669877129645 0 0 0 1.3494850021680094 0 0 0 + AVV{I|L} 4.0592 + + 39 NaN NaN 152806.7 NaN 18823 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23235 92.931 NaN 316850 35 0 61556 0.261 + 20260 NYLPFIMEL 9 48 578.2912552508974 1154.5679575685947 2 578.2916259765625 MULTI HCD FTMS 0 0 0 23231 119158.390625 0.07122483406387443 30 -0.6932220458984375 4 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 62.57269311338072 0.013982455292112035 2 N{I|L}{M(Oxidation (M))|F}E{I|L} 5 4 41.498 0 0 3.5942 0 0 520.2573109357437 0 520.2573109357437 0 8.253800256993955 0 0 0 0.4247425010840047 0 0 0.3807196863200844 N{I|L}{M(Oxidation (M))|F}E{I|L} 3.5942 - 143 NaN NaN 133279.2 NaN 18824 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23236 92.934 NaN 180230 35 0 49070 0.261 + -1 VGKLWLVMFL 10 41 611.356425840029 NaN 0 611.3724365234375 PEAK HCD FTMS 0 0 0 23231 8076.62646484375 0.264528379482888 1 -0.032867431640625 5 Oxidation (M) _VGKLWLVM(Oxidation (M))FL_ REV__ENSG00000213719|ENST00000375784|CLIC1 1.6526216038709556 0.33876987398426067 2 M 1 -1 5.4846 0 0 0.4493 0 0 646.3560268736143 440.2801607721313 1086.6361876457456 0 0 0 0 0 0 0 0 0 M 0.4493 + + 2 + NaN NaN 111583.4 NaN 18825 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23237 92.938 NaN 278540 35 0 17149 0.261 + 13815 KYPSPFFVF 9 69 566.2974339066556 1130.580314880111 2 566.2979736328125 MULTI HCD FTMS 0 0 0 23231 39264.2578125 0.17240551876040439 7 -0.17024993896484375 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 28.271 0 0 2.5006 0 0 866.4320329942263 0 866.4320329942263 0 -0.21652514092060926 -0.21652514092060926 0 0 0.8807196863200843 0 0 0 + V{M(Oxidation (M))|F} 2.5006 + + 285 NaN NaN 131411.8 NaN 18826 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23238 92.941 NaN 163940 35 0 39778 0.261 + 10905 IWPPFQPPAW 10 43 619.8210523161814 1237.6275516991627 2 619.8226928710938 MULTI HCD FTMS 0 0 0 23231 69130.0078125 0.7447804336247373 -3 0.082061767578125 7 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 10.823927491677226 0.4098686510432541 2 Q[HQ]W 4 8 16.972 0 0 1.3714 0 0 640.333787986525 0 640.333787986525 0 9.982697339452464 0 0 0 0.5 0 0 0 Q[HQ]W 1.3714 - 6 NaN NaN 118342.2 NaN 18827 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23239 92.944 NaN 104280 35 0 15228 0.263 + 6502 FPIPGPVLL 9 30 476.79683217520625 951.5791114172125 2 476.7972106933594 MULTI HCD FTMS 0 0 0 23231 31608.150390625 0.8116974121177115 -2 0.0458221435546875 8 Unmodified _FPIPGPVLL_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 14.581692164780916 0.23437375358055648 2 {I|L}{I|L} 2 7 25.217 0 0 2.65 0 0 707.3997669904312 0 707.3997669904312 0 18.226825097560422 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.65 + + 6 NaN NaN 102099.5 NaN 18828 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23240 92.948 NaN 72664 35 0 7063.9 0.261 + 12489 KREELVEF 8 45 525.2870049879781 NaN 0 525.28662109375 PEAK HCD FTMS 0 0 0 23231 17694.830078125 0.7922345085073965 3 -0.08208465576171875 9 Unmodified _KREELVEF_ REV__ENSG00000152503|ENST00000513154|TRIM36;REV__nc|ENSG00000152503|Q9NQ86|TRIM36 7.910154910731844 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 1.2591 0 0 0.12008 0 0 395.29079356794983 503.1831453912719 898.4739389592218 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.12008 + + 1 + NaN NaN 93466.1 NaN 18829 4409 23231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23242 92.952 NaN 440940 35 0 64378 0.327 + 17787 MFCHLWEI 8 79 539.7465295105297 1077.4785060878594 2 539.746337890625 MULTI HCD FTMS 0 0 0 23241 131041.65625 0.5605363611567252 -3 0.0786895751953125 1 Unmodified _MFCHLWEI_ ENST00000380693.7_1_X:11777873-11777969:+|nuORF 8.593279151180031 0.5292430274356741 2 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 3 6 30.044 0 0 2.7883 0 0 0 651.2770173695404 651.2770173695404 9.135676108608987 0 0 0 0 1 0.958607314841775 0 0 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F} 2.7883 - 449 NaN NaN 151207.6 NaN 18830 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23243 92.957 NaN 287660 35 0 35108 0.261 -1 MPPWENIWL 9 56 601.2890662512833 1200.5635795693665 2 601.2890625 MULTI HCD FTMS 0 0 0 23241 103835.0703125 0.21929283928239907 14 -0.290435791015625 2 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 17.11289562659939 0.2125047172822487 2 W{I|L} 2 -1 25.969 0 0 2.1631 0 0 883.3889661003524 0 883.3889661003524 0 0.5360498482393439 0 0 0 0.5 0 0 0 W{I|L} 2.1631 + + 54 NaN NaN 136166.4 NaN 18831 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23244 92.96 NaN 238570 35 0 21959 0.261 + -1 MDFLTCNFI 9 58 588.7563866518749 1175.4982203705497 2 588.7570190429688 MULTI HCD FTMS 0 0 0 23241 127599.265625 0.5753227367495853 -3 0.0786895751953125 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DFLTC(Carbamidomethyl (C))NFI_ REV__ENSG00000136114|ENST00000258613|THSD1;REV__nc|ENSG00000136114|Q9NS62-2|THSD1;REV__nc|ENSG00000136114|Q9NS62-3|THSD1 25.399314129420986 0.14091189997036632 2 {I|L}{I|L}N{M(Oxidation (M))|F}{I|L} 5 -1 58.003 0 0 4.9343 0 0 557.1248646466812 0 557.1248646466812 0 50.55584714187489 0 0 0 1.805462187404089 0 0 0.3494850021680094 {I|L}{I|L}N{M(Oxidation (M))|F}{I|L} 4.9343 - 76 NaN NaN 129194.3 NaN 18832 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23245 92.964 NaN 209770 35 0 41062 0.261 + 15593 LPDWPEVYF 9 43 583.2819239321294 1164.5492949310587 2 583.2826538085938 MULTI HCD FTMS 0 0 0 23241 81961.9609375 0.5012553923341133 -7 0.1937408447265625 4 Unmodified _LPDWPEVYF_ ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1 37.97399986684836 0.07464525285885698 2 PEVY{M(Oxidation (M))|F} 5 4 46.792 0 0 4.0181 0 0 511.24340001094 0 511.24340001094 0 31.307748267658262 0 0 0 1.9247425010840047 0 0 0 + PEVY{M(Oxidation (M))|F} 4.0181 + + 97 + NaN NaN 124353.3 NaN 18833 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23246 92.967 NaN 198560 35 0 28996 0.261 + -1 YNHCDPYLY 9 39 622.7557950029122 1243.4970370726244 2 622.7560424804688 MULTI HCD FTMS 0 0 0 23241 67970.0546875 0.5428325331386661 6 -0.13738250732421875 5 Carbamidomethyl (C) _YNHC(Carbamidomethyl (C))DPYLY_ REV__ENSG00000106302|ENST00000223026|HYAL4 3.944395688203298 0.32111559684428237 2 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 5.6864 0 0 0.45729 0 0 853.3081770587145 0 853.3081770587145 0 0.20181229336984252 0 0 0 0 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.45729 - 40 + NaN NaN 142960 NaN 18834 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23247 92.97 NaN 65213 35 0 4680.4 0.261 -1 0 38 633.3693349814924 1264.7241170297848 2 633.3690795898438 MULTI HCD FTMS 0 0 0 23241 56980.84375 0.01850282559258781 61 -1.3177871704101562 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109629.6 NaN 18835 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23248 92.974 NaN 123920 35 0 16042 0.264 + 22564 QSLQKRWLRR 10 63 457.6082075322928 NaN 0 457.6080627441406 PEAK HCD FTMS 0 0 0 23241 48679.86328125 0.76452509617264 -3 0.0786895751953125 7 Unmodified _QSLQKRWLRR_ REV__ENST00000522362.6_1_8:26366474-26366684:-|nuORF 0.776531954647913 0.3395196853010637 2 P 1 -1 3.9794 0 0 0.43576 0 0 302.8544022698606 510.2709444635375 813.1253467333981 0 0 0 0 0 0 0 0 0 P 0.43576 - 5 + NaN NaN 121999 NaN 18836 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23249 92.977 NaN 274050 35 0 56288 0.261 + -1 CIYMFMYI 8 59 558.2355934038619 1114.4566338745237 2 558.234130859375 MULTI HCD FTMS 0 0 0 23241 52593.80859375 0.5490102861023811 -2 0.04578399658203125 8 2 Oxidation (M) _CIYM(Oxidation (M))FM(Oxidation (M))YI_ REV__ENST00000372067.7_1_6:43753877-43754102:+|nuORF 6.354104778181461 0.5325651638111438 2 C{I|L} 2 -1 16.198 0 0 1.4534 0 0 0 895.3474215143186 895.3474215143186 0.7918124604762493 0 0 0 0 0 0 0 0 C{I|L} 1.4534 + + 17 + NaN NaN 138712.1 NaN 18837 4410 23241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23251 92.982 NaN 1047600 35 0 125070 0.327 + 27024 SYLQYLEYL 9 70 596.3003277385549 1190.5861025439096 2 596.300537109375 MULTI HCD FTMS 0 0 0 23250 593904.875 0.2945480600947007 7 -0.1468658447265625 1 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 152.88595553498965 5.775426743015152E-06 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 108.31 0 0 9.0974 9.0974 92.517 0 0 0 12.900217704352457 67.71652514092061 12.900217704352457 9.018637558036673 0 2.8494850021680094 0 1.9361818737241734 1.1861818737241734 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}E{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}YE{I|L};[YE][KA]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}EY{I|L};[YE][KA]Y{I|L}E{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}E{I|L}Y;{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}YE{I|L};[YE][KA]Y{I|L}YE{I|L};[YE]{I|L}Y[KA]EY{I|L} 9.0974;8.3399;7.6001;7.3767;7.3277;6.6192;6.5702;6.1502;5.8795;5.728 +;-;-;-;-;-;-;-;-;- + 896 NaN NaN 253136.1 NaN 18838 4411 23250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23252 92.986 NaN 180360 35 0 12854 0.261 + 10943 IYCFVSHLMT 10 49 607.2906497856529 1212.5667466381058 2 607.2911987304688 MULTI HCD FTMS 0 0 0 23250 61224.62109375 0.22409804041110212 7 -0.1468658447265625 2 Unmodified _IYCFVSHLMT_ L1ME3G_dup4202|chr4:86822041-86822425:+|1.9702619947551483|0.3889572890102934|2.34|521.0|24|3|anti-sense 36.12702656103203 0.1790159924230938 2 [Y{I|L}]SQS[NP]EY{I|L} 10 8 + 49.435 0 0 4.0769 4.0769 84.234 0 0 0 12.289784572998173 9.203103093438969 9.203103093438969 7.730012720637376 0 1.6861818737241734 1.3979400086720375 0 0 [Y{I|L}]SQS[NP]EY{I|L};[Y{I|L}]SQAAW{[{M(Oxidation (M))|F}D]|MM}{I|L};[Y{I|L}]S[AG]S[NP]EY{I|L};[Y{I|L}]G{[SA]|[TG]}S[NP]EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS[NP]EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QAAW{[{M(Oxidation (M))|F}D]|MM}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S[NP]EY{I|L};[Y{I|L}]G[W{I|L}]{[C(Carbamidomethyl (C))G]|[NC]}{I|L}[MT] 4.0769;3.4394;3.3211;3.2554;3.0633;2.4259;2.3075;1.6857 -;-;-;-;-;-;-;- 654 NaN NaN 122391.4 NaN 18839 4411 23250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23253 92.99 NaN 72597 35 0 10606 0.262 + 7426 FVSIEVPII 9 39 508.80547033400836 1015.5963877348167 2 508.80657958984375 MULTI HCD FTMS 0 0 0 23250 14484.1748046875 0.3136276170357636 1 -0.01959228515625 3 Unmodified _FVSIEVPII_ REV__tr|U7T0U6|U7T0U6_FUSNULargeribosomalsubunitproteinuL11OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplKPE=3SV=1 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6729 0 0 850.5176656662605 0 850.5176656662605 0 1.8124123737558762 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6729 + + 3 + NaN NaN 103307.1 NaN 18840 4411 23250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23254 92.993 NaN 40842 35 0 6026.6 0.261 + -1 CALCFVFLVF 10 28 638.3172160128993 1274.6198790925985 2 638.3173828125 MULTI HCD FTMS 0 0 0 23250 24953.869140625 0.40761750462065455 4 -0.0915069580078125 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))ALC(Carbamidomethyl (C))FVFLVF_ REV__ENST00000406606.7_3_9:136627407-136627686:-|nuORF 1.844237919475145 0.46554186016084764 2 V{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6451 0 0 1010.473436424025 0 1010.473436424025 0 20.969100130080562 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6451 + + 1 NaN NaN 107854 NaN 18841 4411 23250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23255 92.997 NaN 87920 35 0 21565 0.262 -1 LCHYCGER 8 31 547.7288859993062 1093.4432190654122 2 547.72900390625 MULTI HCD FTMS 0 0 0 23250 55947.4140625 0.739095932101092 -2 0.06249237060546875 5 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))HYC(Carbamidomethyl (C))GER_ ENSG00000089775|ENST00000608382|ZBTB25 4.3292370932331545 0.5355693454741696 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110087.5 NaN 18842 4411 23250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23257 93.002 NaN 702090 35 0 151510 0.327 + 5564 FLLALEPEL 9 52 522.8021507419635 1043.5897485507269 2 522.8026123046875 MULTI HCD FTMS 0 0 0 23256 314763.90625 0.18646896769179092 8 -0.1627960205078125 1 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 46.020951573049366 0.037705236580089195 2 E{I|L}A{I|L}E{I|L} 6 4 55.227 0 0 5.292 0 0 357.1896057996665 0 357.1896057996665 0 48.23699398972998 0 0 0 1.805462187404089 0 0.3807196863200844 0 E{I|L}A{I|L}E{I|L} 5.292 - 91 NaN NaN 190929.7 NaN 18843 4412 23256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23258 93.006 NaN 130400 35 0 28176 0.261 + 22424 QPYGGFLDIL 10 32 561.7951575475485 1121.5757621618968 2 561.7955322265625 MULTI HCD FTMS 0 0 0 23256 67878.7734375 0.029576127798151917 11 -0.2250213623046875 2 Unmodified _QPYGGFLDIL_ ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK 8.155526934196011 0.43213520406898465 2 Y{I|L}D{I|L}{I|L} 5 5 41.454 0 0 3.696 0 0 486.23179824043126 0 486.23179824043126 0 35.96910013008056 0 0 0 0.5 0 0 0 Y{I|L}D{I|L}{I|L} 3.696 - 18 NaN NaN 103794.7 NaN 18844 4412 23256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23259 93.01 NaN 133740 35 0 21194 0.261 + 15738 LPFDLAIPL 9 44 499.7996827583448 997.5848125834896 2 499.79986572265625 MULTI HCD FTMS 0 0 0 23256 55843.94921875 0.2929292707832945 -5 0.12790679931640625 3 Unmodified _LPFDLAIPL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense 11.640296217721598 0.25978676193971967 2 A[{I|L}P]{I|L} 4 5 26.198 0 0 2.6261 0 0 585.3153296624567 0 585.3153296624567 0 26.197887582883936 0 0 0 1 0 0 0 + A[{I|L}P]{I|L} 2.6261 + + 13 NaN NaN 102580.7 NaN 18845 4412 23256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23260 93.013 NaN 110890 35 0 18073 0.261 + 6503 FPIPGPVLL 9 34 476.79683217520625 951.5791114172125 2 476.7967529296875 MULTI HCD FTMS 0 0 0 23256 25401.896484375 0.6523207901897572 1 -0.0228271484375 4 Unmodified _FPIPGPVLL_ ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF 14.581692164780916 0.23437375358055648 2 {I|L}{I|L} 2 7 25.969 0 0 2.7291 0 0 707.3994606145606 0 707.3994606145606 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.7291 + + 3 NaN NaN 120038.9 NaN 18846 4412 23256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23261 93.016 NaN 49766 35 0 7235.2 0.261 + -1 IITQCLVRFRN 11 30 473.9351623786267 NaN 0 473.9350280761719 PEAK HCD FTMS 0 0 0 23256 7556.21240234375 0.3580728673766025 -1 0.01959228515625 5 Carbamidomethyl (C) _IITQC(Carbamidomethyl (C))LVRFRN_ REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-2|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-4|CACNA1I;REV__SH3BP1-CACNA1I|1|fusion 0.40826533853263924 0.34096201227758716 2 R 1 -1 3.0989 0 0 0.32763 0 0 417.72681782190347 369.0138033502563 786.7406211721598 0 0 0 0 0 0 0 0 0 R 0.32763 + + 1 + NaN NaN 102454.4 NaN 18847 4412 23256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23262 93.02 NaN 90721 35 0 9211.4 0.261 + -1 IWMTCSMR 8 52 550.7377483150498 NaN 0 550.7529296875 PEAK HCD FTMS 0 0 0 23256 17523.3828125 0.8023089974155589 -4 0.095001220703125 6 Carbamidomethyl (C),Oxidation (M) _IWMTC(Carbamidomethyl (C))SM(Oxidation (M))R_ REV__ENST00000452015.8_3_14:23767740-23768628:-|nuORF 2.577480529830294 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.36194 0 0 151.10713617912444 785.3181663081265 936.425302487251 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.36194 + + 8 + NaN NaN 105346.3 NaN 18848 4412 23256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23264 93.024 NaN 2085200 35 0 441890 0.327 + 30645 VPDPFFVEL 9 76 531.7795897272732 1061.5446265213463 2 531.779052734375 MULTI HCD FTMS 0 0 0 23263 1502655.125 1 0 0 1 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 58.678817012210395 0.019429721296335044 2 DPV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VE{I|L} 9 2 + 45.965 0 0 4.33 4.33 82.918 0 0 0 14.771664843060176 0.5315058928581351 0.5315058928581351 3.5653741265442562 0 2.309894379144197 0 1.274227503252014 0 DPV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}VE{I|L};D{I|L}{M(Oxidation (M))|F}[KA]QVE{I|L};D{[QV]|[N{I|L}]|[RA]|[KV]}{[NV]|[RG]}{M(Oxidation (M))|F}VE{I|L};{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F}S[EP]E{I|L};DPV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}D{I|L}{I|L};D{I|L}{M(Oxidation (M))|F}[KA]QD{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}[YV]{[HG]|PP}V;{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}[YV]{[HG]|PP}V;D{[QV]|[N{I|L}]|[RA]|[KV]}{[NV]|[RG]}{M(Oxidation (M))|F}D{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}V{M(Oxidation (M))|F}[YV]{[HG]|PP}V 4.33;3.9941;3.4053;3.1998;2.7345;2.3987;2.1051;1.8215;1.8099;1.664 -;-;-;-;-;-;-;-;-;- 567 + NaN NaN 428153.3 NaN 18849 4413 23263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23265 93.029 NaN 918920 35 0 256660 0.261 + 6119 FPEGLFYEF 9 60 574.7685982649667 1147.5226435967334 2 574.768798828125 MULTI HCD FTMS 0 0 0 23263 523603.75 0.16021934532231175 -24 0.6429977416992188 2 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 58.678817012210395 0.019429721296335044 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 68.153 0 0 5.9391 5.9391 92.417 0 0 0 10.642492736872597 53.46024470058502 10.642492736872597 34.50318762307695 0 1.8494850021680094 0 0.3494850021680094 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9391;2.9324 -;- 191 NaN NaN 230023.9 NaN 18850 4413 23263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23266 93.032 NaN 122090 35 0 7558 0.263 -1 0 56 451.93253336616567 1352.775770698697 3 451.9325866699219 MULTI HCD FTMS 0 0 0 23263 110372.90625 0.3923365618401689 21 -0.46047210693359375 3 NaN NaN 2 V 1 -1 1.5938 0 0 0.11782 0 0 894.5043301242814 356.17499719791255 1250.679327322194 0 0 0 0 0 0 0 0 0 V 0.11782 - 7 + NaN NaN 110018.2 NaN 18851 4413 23263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23267 93.036 NaN 323120 35 0 18380 0.261 + 9946 IDRVRLRERAN 11 64 466.60794798019344 1396.8020145407804 3 466.60791015625 MULTI HCD FTMS 0 0 0 23263 150266.828125 0.9914308974485987 6 -0.13033294677734375 4 Unmodified _IDRVRLRERAN_ REV__ENSG00000071564|ENST00000262965|TCF3;REV__ENSG00000140262|ENST00000333725|TCF12;REV__ENSG00000196628|ENST00000354452|TCF4;REV__ENST00000592395.5_1_19:1612394-1615452:-|nuORF;REV__nc|ENSG00000071564|P15923-3|TCF3;REV__nc|ENSG00000140262|Q99081-2|TCF12;REV__nc|ENSG00000140262|Q99081-4|TCF12;REV__nc|ENSG00000140262|Q99081|TCF12;REV__nc|ENSG00000196628|P15884-10|TCF4;REV__nc|ENSG00000196628|P15884-11|TCF4;REV__nc|ENSG00000196628|P15884-12|TCF4;REV__nc|ENSG00000196628|P15884-13|TCF4;REV__nc|ENSG00000196628|P15884-14|TCF4;REV__nc|ENSG00000196628|P15884-15|TCF4;REV__nc|ENSG00000196628|P15884-16|TCF4;REV__nc|ENSG00000196628|P15884-2|TCF4;REV__nc|ENSG00000196628|P15884-4|TCF4;REV__nc|ENSG00000196628|P15884-5|TCF4;REV__nc|ENSG00000196628|P15884-6|TCF4;REV__nc|ENSG00000196628|P15884-7|TCF4;REV__nc|ENSG00000196628|P15884-8|TCF4;REV__nc|ENSG00000196628|P15884-9|TCF4;REV__nc|ENSG00000196628|P15884|TCF4 1.0135738785822086 0.41447547578978133 2 V{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.7853 0 0 595.3959439799823 552.24542651946 1147.6413704994425 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.7853 - 14 + NaN NaN 140824.3 NaN 18852 4413 23263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23269 93.041 NaN 2505800 35 0 319030 0.327 + 5093 FEFEPFLQ 8 90 528.7556106842984 1055.4966684353967 2 528.756103515625 MULTI HCD FTMS 0 0 0 23268 1620239.875 0.6333319065930743 1 -0.03281402587890625 1 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 133.70201269244603 0.04475792037331376 2 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 77.587 0 0 7.3507 7.3507 88.66 0 0 0 5.832771592910106 5.832771592910106 5.832771592910106 5.832771592910106 0 2.3494850021680094 0 1.110924374808178 1.086696871556164 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}EPE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PEQ{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]PQ{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PEQ{I|L}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PQE{M(Oxidation (M))|F}{I|L};[{M(Oxidation (M))|F}E]PQ{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}AAV 7.3507;6.7981;6.3495;5.6312;5.2022;4.6603;4.5701;4.5146;4.4801;4.396 -;-;-;-;-;-;-;-;-;- 1894 + NaN NaN 465807.1 NaN 18853 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23270 93.045 NaN 892220 35 0 125510 0.261 + 6305 FPFPVTVSL 9 59 503.78403799897285 1005.5535230647457 2 503.78411865234375 MULTI HCD FTMS 0 0 0 23268 304500.875 0.46723903283716184 1 -0.03281402587890625 2 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 74.42276476219924 0.007657080072768255 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[VP]TVS{I|L} 9 0 + 54.191 0 0 5.3892 5.3892 85.939 0 0 0 0.39136227485691677 41.09243748081781 0.39136227485691677 7.4181181749801794 0 1.805462187404089 0 0.805462187404089 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}[VP]TVS{I|L};{[TV]|[{I|L}S]}{[TV]|[{I|L}S]}[C(Carbamidomethyl (C))K]VS{I|L};{[TV]|[{I|L}S]}{NN|[MP]|[D{I|L}]|[EV]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L};[VS]{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}VS{I|L};[VS][{I|L}T][C(Carbamidomethyl (C))K]VS{I|L};[VS]{[QN]|[E{I|L}]|[KN]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L} 5.3892;4.6515;3.2767;2.8079;2.6625;1.2878 +;-;-;-;-;- + 84 NaN NaN 215652.1 NaN 18854 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23271 93.049 NaN 783610 35 0 123110 0.261 -1 TILLALVMF 9 76 518.8101539210585 1035.6057549089169 2 518.810546875 MULTI HCD FTMS 0 0 0 23268 97832.640625 0.023440491229520372 12 -0.25125885009765625 3 Oxidation (M) _TILLALVM(Oxidation (M))F_ ENSG00000125255|ENST00000245312|SLC10A2 5.230669730166228 0.3113646817964458 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 1.6406 0 0 870.5267276645794 0 870.5267276645794 0 10.536049848239344 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6406 + + 37 + NaN NaN 216157.8 NaN 18855 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23272 93.052 NaN 489010 35 0 110410 0.261 + 15105 LMIDFGFLE 9 61 542.7704423831382 1083.5263318330763 2 542.77001953125 MULTI HCD FTMS 0 0 0 23268 163293.5 0.7995560769239185 1 -0.03281402587890625 4 Unmodified _LMIDFGFLE_ REV__ENSG00000135912|ENST00000392102|TTLL4;REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF 21.74664581756881 0.17247014374749275 2 VPDP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[YT] 9 -1 + 47.986 0 0 4.4287 4.4287 84.571 0 0 0 20.366385355227834 1.4904371307691378 1.4904371307691378 7.417213583253073 0 1.2614393726401687 0 0 0 VPDP{M(Oxidation (M))|F}{M(Oxidation (M))|F}V[YT];[DP]VPW[QT]E{I|L};[DP]VPC{[NV]|[RG]}VE{I|L};[DP]V{[NV]|[RG]}S[DP]KN;[DP]V{[NV]|[RG]}{[CP]|[EA]}VE{I|L};[VP]DPW[QT]E{I|L};VP[{M(Oxidation (M))|F}E]{I|L}{[ES]|[DT]|[{I|L}C]}[YT];{I|L}{M(Oxidation (M))|F}[DP]{I|L}{[ES]|[DT]|[{I|L}C]}[YT];[VP]DPC{[NV]|[RG]}VE{I|L};VP[{M(Oxidation (M))|F}E]{[ET]|[MV]}V[YT] 4.4287;3.7441;3.5135;3.351;3.0979;2.6376;2.5352;2.458;2.407;2.2574 -;-;-;-;-;-;-;-;-;- 471 + NaN NaN 159494.6 NaN 18856 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23273 93.055 NaN 358800 35 0 67888 0.261 + 31285 VWFNIGSVDTF 11 51 642.8165521351833 1283.6185513371665 2 642.816650390625 MULTI HCD FTMS 0 0 0 23268 164299.046875 0.5770459479452716 3 -0.078521728515625 5 Unmodified _VWFNIGSVDTF_ ENSG00000141385|ENST00000269143|AFG3L2 124.953037156858 0.013497877353096458 2 {[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}GSVDT{M(Oxidation (M))|F} 11 0 + 106.11 0 0 8.2663 8.2663 91.56 0 0 0 7.367585652254192 75.88676600919719 7.367585652254192 9.128498242811006 0 3.2302046884880937 0 0 1.5114393726401687 + + {[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}GSVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{I|L}GSVDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}GG{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VDT{M(Oxidation (M))|F};{[RE]|[WV]}{M(Oxidation (M))|F}N{I|L}G[YT]{[DA]|[EG]}V;{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}V[SG]{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}WV 8.2663;7.5551;6.0573;5.3433;4.0729;1.1419 +;-;-;-;-;- + 401 NaN NaN 136041.9 NaN 18857 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23274 93.059 NaN 379550 35 0 114390 0.262 + -1 SGHMAYGPNC 10 46 555.210850813026 1108.407148692852 2 555.2110595703125 MULTI HCD FTMS 0 0 0 23268 69935.0546875 0.5602358455081871 1 -0.03281402587890625 6 Carbamidomethyl (C),Oxidation (M) _SGHM(Oxidation (M))AYGPNC(Carbamidomethyl (C))_ REV__ENSG00000183117|ENST00000635120|CSMD1;REV__ENST00000523488.5_1_8:3008913-3253839:-|nuORF;REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1;REV__nc|ENSG00000183117|Q96PZ7-3|CSMD1;REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 151092.6 NaN 18858 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23275 93.062 NaN 249570 35 0 25130 0.261 -1 AMVCTFFDAF 10 52 612.7568108622756 1223.4990687913512 2 612.7568969726562 MULTI HCD FTMS 0 0 0 23268 27234.626953125 0.31755790664047884 1 -0.03281402587890625 7 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))VC(Carbamidomethyl (C))TFFDAF_ ENSG00000157916|ENST00000605895|RER1 6.723162845929126 0.4397169348982109 2 {M(Oxidation (M))|F}[DG]{I|L}A{M(Oxidation (M))|F} 6 -1 36.63 0 0 2.9938 0 0 555.1810169904312 0 555.1810169904312 0 32.65031251017078 0 0 0 1.1747425010840047 0 0.4247425010840047 0 {M(Oxidation (M))|F}[DG]{I|L}A{M(Oxidation (M))|F} 2.9938 - 17 NaN NaN 146738.7 NaN 18859 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23276 93.065 NaN 265700 35 0 27980 0.261 -1 0 57 585.7594676403127 1169.5043823474252 2 585.760009765625 MULTI HCD FTMS 0 0 0 23268 64443.8125 0.12541396389660114 -22 0.587310791015625 8 NaN NaN 2 E{I|L}WQ{M(Oxidation (M))|F}PE 7 -1 60.591 0 0 5.1809 0 0 222.10037429023595 0 222.10037429023595 0 45.01811972993799 0 0 0 0.5 0 1.035666875892183 0.3252574989159953 E{I|L}WQ{M(Oxidation (M))|F}PE 5.1809 - 265 NaN NaN 128676 NaN 18860 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23277 93.069 NaN 61922 35 0 6624.4 0.261 + 8230 GRVETEVLF 9 34 525.2870049879781 NaN 0 525.2869262695312 PEAK HCD FTMS 0 0 0 23268 5283.34716796875 0.23654649004310713 7 -0.16294097900390625 9 Unmodified _GRVETEVLF_ tr|U7SZZ4|U7SZZ4_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00754PE=4SV=1 7.910154910731844 0.25691533546754686 2 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.37951 0 0 524.2807227671686 374.21113001041255 898.4918527775812 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.37951 + + 1 + NaN NaN 107191 NaN 18861 4414 23268 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23279 93.074 NaN 393860 35 0 22069 0.327 -1 0 92 437.25721486719715 1308.7498152017915 3 437.2572937011719 MULTI HCD FTMS 0 0 0 23278 236975.1875 0.532092785535665 12 -0.234710693359375 1 NaN NaN 2 Q 1 -1 7.8567 0 0 0.60032 0 0 590.3500471190368 587.3308199518186 1177.6808670708556 0 0 0 0 0 0.3252574989159953 0 0 0 Q 0.60032 - 75 + NaN NaN 160398.2 NaN 18862 4415 23278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23280 93.078 NaN 493270 35 0 69270 0.261 + 20261 NYLPFIMEL 9 74 578.2912552508974 1154.5679575685947 2 578.2914428710938 MULTI HCD FTMS 0 0 0 23278 102132.75 0.06104805656640826 36 -0.8325653076171875 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 69.10491478415734 0.009377850133389008 2 [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 67.514 0 0 5.8475 5.8475 92.164 0 0 0 20.157942671832316 42.47663582217547 20.157942671832316 32.85666875892183 0 1.863982988912431 1.3010299956639813 0 0 + + [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[VS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L};{[CT]|[{M(Oxidation (M))|F}G]}[PA][YV]{I|L}{M(Oxidation (M))|F}E{I|L};{[QN]|[E{I|L}]|[KN]}[RN][NG]{I|L}D[QP];{[QN]|[E{I|L}]|[KN]}[{I|L}V][Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP];[Q{I|L}][RD][NG]{I|L}D[QP];{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[QP];{[QN]|[E{I|L}]|[KN]}[KQ]{[QG]|[NA]}{I|L}D[QP] 5.8475;3.0017;1.5157;1.1761;1.0788;1.0236;0.66551;0.14382 +;-;-;-;-;-;-;- + 1080 NaN NaN 158267.6 NaN 18863 4415 23278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23281 93.082 NaN 154490 35 0 24569 0.262 + 30589 VPAAILGLVL 10 32 483.32331685784794 964.6320807824959 2 483.32330322265625 MULTI HCD FTMS 0 0 0 23278 138759.703125 0.04913743820624595 13 -0.26432037353515625 3 Unmodified _VPAAILGLVL_ tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1 7.910154910731844 0.4334339971971892 2 V{I|L} 2 8 25.969 0 0 2.6921 0 0 734.4681897227985 0 734.4681897227985 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 14 NaN NaN 109075.5 NaN 18864 4415 23278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23282 93.085 NaN 146200 35 0 21681 0.261 + 22806 QYLFPSFETF 10 49 639.8058871122373 1277.5972212912745 2 639.8063354492188 MULTI HCD FTMS 0 0 0 23278 37157.58203125 0.425379478376096 -2 0.0490875244140625 4 Unmodified _QYLFPSFETF_ ENSG00000134539|ENST00000336164|KLRD1;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;ENST00000543420.5_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-2|KLRD1;nc|ENSG00000134539|Q13241-3|KLRD1 53.40400417844725 0.06540992187319636 2 RET{M(Oxidation (M))|F} 4 7 46.938 0 0 3.6739 0 0 726.322563514735 0 726.322563514735 0 17.998037644757048 0 0 0 1.5 0 0 0 RET{M(Oxidation (M))|F} 3.6739 - 37 NaN NaN 121822.3 NaN 18865 4415 23278 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23284 93.09 NaN 531200 35 0 77816 0.327 + 14425 LEMHICWF 8 83 539.7465295105297 1077.4785060878594 2 539.7467651367188 MULTI HCD FTMS 0 0 0 23283 196778.53125 0.8417286916017589 3 -0.06499481201171875 1 Unmodified _LEMHICWF_ ENST00000529637.5_1_1:22055191-22056289:-|nuORF 18.13498045792455 0.4603629008820478 2 {[QN]|[E{I|L}]|[KN]}WEP{M(Oxidation (M))|F} 6 5 32.29 0 0 2.9968 0 0 0 273.08993569375497 273.08993569375497 8.99527338021214 0 0 0 0 1.5752574989159953 0 0 0.6694451763165201 {[QN]|[E{I|L}]|[KN]}WEP{M(Oxidation (M))|F} 2.9968 - 736 NaN NaN 173019.8 NaN 18866 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23285 93.094 NaN 587820 35 0 60072 0.261 -1 PRSLDPNMPVI 11 69 627.8291851647414 1253.6438173962827 2 627.8297119140625 MULTI HCD FTMS 0 0 0 23283 126634.1953125 0.6960654972058057 -3 0.065338134765625 2 Oxidation (M) _PRSLDPNM(Oxidation (M))PVI_ ENSG00000143842|ENST00000367204|SOX13;ENST00000272193.10_1_1:204085443-204095259:+|nuORF 10.799506525563784 0.36298595732910816 2 [VP][TA]WWADPV{I|L} 11 -1 + 70.922 0 0 5.6573 5.6573 90.937 0 0 0 2.614172158888664 63.932310886229516 2.614172158888664 20.740312677277196 0 2.1549471895720984 0 0.6421590589602533 0 [VP][TA]WWADPV{I|L};[VP][TA]W{[DA]|[EG]}WPV{I|L};[VP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}[RD]ADPV{I|L};[VP]WW[TA]ADPV{I|L} 5.6573;4.0029;3.7535;3.6539 -;-;-;- 298 NaN NaN 181015.2 NaN 18867 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23286 93.098 NaN 274470 35 0 47987 0.261 + 15594 LPDWPEVYF 9 60 583.2819239321294 1164.5492949310587 2 583.2823486328125 MULTI HCD FTMS 0 0 0 23283 83033.234375 0.507806987501787 -1 0.0162506103515625 3 Unmodified _LPDWPEVYF_ ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1 25.399314129420986 0.14091189997036632 2 N[EP]VY{M(Oxidation (M))|F} 6 4 43.148 0 0 3.7052 0 0 397.19404799629064 0 397.19404799629064 0 24.42008053022313 0 0 0 1.5 0 0 0.4247425010840047 N[EP]VY{M(Oxidation (M))|F} 3.7052 - 115 NaN NaN 133313 NaN 18868 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23287 93.101 NaN 131690 35 0 33898 0.261 + 10906 IWPPFQPPAW 10 38 619.8210523161814 1237.6275516991627 2 619.821533203125 MULTI HCD FTMS 0 0 0 23283 33651.1953125 0.3625451902856962 4 -0.0746307373046875 4 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 10.073929032068715 0.4168838835836452 2 Q[HK]W 4 8 24.693 0 0 1.9952 0 0 640.33598525215 0 640.33598525215 0 19.20818753952375 0 0 0 1 0 0 0 Q[HK]W 1.9952 - 10 NaN NaN 114155.1 NaN 18869 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23288 93.104 NaN 163590 35 0 14884 0.261 -1 FSECMIQVF 9 54 588.7563866518749 1175.4982203705497 2 588.7570190429688 MULTI HCD FTMS 0 0 0 23283 92584.2578125 0.4174462002090122 3 -0.06499481201171875 5 Carbamidomethyl (C),Oxidation (M) _FSEC(Carbamidomethyl (C))M(Oxidation (M))IQVF_ ENSG00000279514|ENST00000623907|OR4C16 15.847184025352803 0.2234401846867398 2 {I|L}{I|L}N{M(Oxidation (M))|F}{I|L} 5 -1 48.443 0 0 4.1211 0 0 557.123827049025 0 557.123827049025 0 44.463950151760656 0 0 0 1.3494850021680094 0 0 0 {I|L}{I|L}N{M(Oxidation (M))|F}{I|L} 4.1211 - 53 NaN NaN 113753.9 NaN 18870 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23289 93.108 NaN 96328 35 0 8474 0.261 + 13816 KYPSPFFVF 9 40 566.2974339066556 1130.580314880111 2 566.29736328125 MULTI HCD FTMS 0 0 0 23283 32488.0703125 0.14265194168442696 14 -0.307220458984375 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 2 V{M(Oxidation (M))|F} 2 7 25.969 0 0 2.297 0 0 866.4358212379462 0 866.4358212379462 0 15.511525224473813 0 0 0 0.5 0 0 0 + V{M(Oxidation (M))|F} 2.297 + + 20 NaN NaN 120369.7 NaN 18871 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23290 93.111 NaN 132460 35 0 46097 0.261 -1 0 46 633.3693349814924 1264.7241170297848 2 633.8709106445312 MULTI HCD FTMS 0 0 0 23283 32695.642578125 0.018054571875331753 67 -1.47491455078125 7 NaN NaN 2 Q 1 -1 6.9897 0 0 0.55267 0 0 763.5040375393536 370.1405428522094 1133.644580391563 0 0 0 0 0 0 0 0 0 Q 0.55267 - 6 + NaN NaN 102330.5 NaN 18872 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23291 93.114 NaN 54355 35 0 7231 0.261 -1 QMVAYFILVC 10 34 622.3160595036612 1242.6175660741224 2 622.3167114257812 MULTI HCD FTMS 0 0 0 23283 15861.544921875 0.6032017609893413 11 -0.2184600830078125 8 Carbamidomethyl (C) _QMVAYFILVC(Carbamidomethyl (C))_ ENST00000544665.7_1_16:31343862-31344042:+|nuORF 10.823927491677226 0.4098686510432541 2 [YN]{I|L} 3 -1 37.447 0 0 3.0136 0 0 0 849.4043757267192 849.4043757267192 30.457574905606748 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L} 3.0136 - 10 NaN NaN 104448.7 NaN 18873 4416 23283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23293 93.119 NaN 183290 35 0 29159 0.327 + 17997 MLFIFMAR 8 45 514.7751680409667 1027.5357831487333 2 514.7754516601562 MULTI HCD FTMS 0 0 0 23292 121764.140625 0.9319307363604211 -3 0.078521728515625 1 Unmodified _MLFIFMAR_ REV__ENST00000524967.5_1_1:169256457-169336948:-|nuORF 14.581692164780916 0.48650662947107914 2 {I|L}M{M(Oxidation (M))|F} 3 -1 52.435 0 0 5.103 0 0 0 633.3227761638148 633.3227761638148 32.25772496747986 0 0 0 0 0.9247425010840047 2 0 0 {I|L}M{M(Oxidation (M))|F} 5.103 - 30 + NaN NaN 113229.6 NaN 18874 4417 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23294 93.124 NaN 129600 35 0 26656 0.263 + 8283 GVGHPPPR 8 42 408.7273009818012 NaN 0 408.7272644042969 PEAK HCD FTMS 0 0 0 23292 46494.79296875 0.6765391397623572 -2 0.04570770263671875 2 Unmodified _GVGHPPPR_ REV__ENST00000474481.1_1_1:1425808-1431194:+|nuORF 0.7936320650641473 0.38822285293237185 2 A 1 -1 6.2814 0 0 0.77031 0 0 626.3965442470025 114.98308740787343 741.3796316548759 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.77031 - 5 + NaN NaN 118816.9 NaN 18875 4417 23292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23296 93.129 NaN 570370 35 0 62253 0.327 + 27025 SYLQYLEYL 9 64 596.3003277385549 1190.5861025439096 2 596.3001708984375 MULTI HCD FTMS 0 0 0 23295 183945.765625 0.09122819277662644 14 -0.307220458984375 1 Unmodified _SYLQYLEYL_ ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 137.42381684818497 0.00015474832393368816 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L} 9 0 + 102.95 0 0 8.6467 8.6467 95.759 0 0 0 16.478174818886373 87.22332374560656 16.478174818886373 19.49092531119419 0 2.4247425010840047 0 1.8556270500406935 1.1549471895720984 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QY{I|L}EY{I|L};[YE][KA]Y{I|L}EY{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]Y{I|L}EY{I|L};[YE]{I|L}[Y{I|L}]{[QS]|[NT]}Y{I|L} 8.6467;7.0096;6.9033;2.5063 +;-;-;- + 557 NaN NaN 179038.5 NaN 18876 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23297 93.133 NaN 405620 35 0 74522 0.261 + 5565 FLLALEPEL 9 56 522.8021507419635 1043.5897485507269 2 522.8025512695312 MULTI HCD FTMS 0 0 0 23295 171658.765625 0.10169219591498457 14 -0.307220458984375 2 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 39.957323273324995 0.06554068735427583 2 E{I|L}A{[QN]|[E{I|L}]|[KN]}{I|L} 6 4 34.403 0 0 3.2966 0 0 357.1895621754491 0 357.1895621754491 0 33.918271902055324 0 0 0 1.805462187404089 0 0.3494850021680094 0 E{I|L}A{[QN]|[E{I|L}]|[KN]}{I|L} 3.2966 - 49 NaN NaN 156328.1 NaN 18877 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23298 93.137 NaN 289560 35 0 51404 0.261 + 14579 LFLDPAPLL 9 41 499.7996827583448 997.5848125834896 2 499.79998779296875 MULTI HCD FTMS 0 0 0 23295 187226.375 0.9820953973959877 1 -0.02588653564453125 3 Unmodified _LFLDPAPLL_ REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF 21.74664581756881 0.17247014374749275 2 AP{I|L}{I|L} 4 -1 44.993 0 0 4.5102 0 0 585.3156334421284 0 585.3156334421284 0 44.992822134202015 0 0 0 1.305462187404089 0 0 0 AP{I|L}{I|L} 4.5102 + + 18 NaN NaN 149055.1 NaN 18878 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23299 93.14 NaN 224380 35 0 40918 0.261 -1 MPPWENIWL 9 49 601.2890662512833 1200.5635795693665 2 601.2902221679688 MULTI HCD FTMS 0 0 0 23295 21119.8671875 0.044603770449380666 22 -0.4967041015625 4 Oxidation (M) _M(Oxidation (M))PPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 8.745405648335112 0.2847203663274469 2 W{I|L} 2 -1 25.969 0 0 2.1631 0 0 883.3908299215117 0 883.3908299215117 0 20.48455006504028 0 0 0 0.5 0 0 0 W{I|L} 2.1631 + + 7 NaN NaN 128816 NaN 18879 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23300 93.143 NaN 120850 35 0 25051 0.261 + 9991 IELCACQGEE 10 45 547.7288859993062 1093.4432190654122 2 547.7290649414062 MULTI HCD FTMS 0 0 0 23295 39142.07421875 0.5170882035183815 5 -0.097747802734375 5 Unmodified _IELCACQGEE_ REV__ENST00000360458.5_1_X:102940136-102942963:-|nuORF 5.731851221503515 0.44496410492002586 2 {I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 3 -1 7.4473 0 0 0.68108 0 0 687.2247181623062 0 687.2247181623062 0 7.447274948966937 0 0 0 0 0 0 0 {I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 0.68108 - 1 NaN NaN 108569.4 NaN 18880 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23301 93.147 NaN 132950 35 0 15089 0.261 + 9754 HYIFTTLDL 9 38 561.7951575475485 1121.5757621618968 2 561.79541015625 MULTI HCD FTMS 0 0 0 23295 31631.552734375 0.013782494861773874 17 -0.382293701171875 6 Unmodified _HYIFTTLDL_ ENSG00000164418|ENST00000369134|GRIK2;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2 4.3292370932331545 0.3181982124262546 2 D{I|L}{I|L} 3 7 26.198 0 0 2.3358 0 0 762.3693714826187 0 762.3693714826187 0 19.20818753952375 0 0 0 0 0 0 0 D{I|L}{I|L} 2.3358 - 7 NaN NaN 101776.4 NaN 18881 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23302 93.15 NaN 104450 35 0 22399 0.261 + 6415 FPHMLFMV 8 43 511.2516809626913 NaN 0 510.7911682128906 PEAK HCD FTMS 0 0 0 23295 12770.6181640625 0.5363474924238546 -4 0.08817291259765625 7 Unmodified _FPHMLFMV_ chr6:31669172-31669328|522|13.99|0.0|20.42|+|ENST00000677536|CSNK2B,CSNK2B;ENSG00000204435|ENST00000375882|CSNK2B 2.8892196856762586 0.38822285293237185 2 PE 2 7 8.5835 0 0 0.84112 0 0 147.98999627907887 643.3793429010374 791.3693391801162 0 0 0 0 0 0 0 0 0 PE 0.84112 - 11 + NaN NaN 101288.1 NaN 18882 4418 23295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23304 93.155 NaN 491740 35 0 93770 0.327 + 35762 YYLWPAVQL 9 55 576.8077895257278 1151.6010261182555 2 576.8079223632812 MULTI HCD FTMS 0 0 0 23303 156201.875 0.7646547831769094 -1 0.02588653564453125 1 Unmodified _YYLWPAVQL_ ENSG00000115204|ENST00000380044|MPV17 53.57557251787612 0.02656881086235134 2 YY{I|L}W[PA]VQ{I|L} 9 0 + 46.092 0 0 4.0025 4.0025 83.449 0 0 0 5.6424927368725974 29.10273743745762 5.6424927368725974 6.020599913279625 0 1.5 0 0 0 + + YY{I|L}W[PA]VQ{I|L};[Y{I|L}]YW[PA]VQ{I|L};YY{I|L}W[PA]V[AG]{I|L};[Y{I|L}]WY[PA]VQ{I|L};[Y{I|L}]YW[PA]V[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[HV]{M(Oxidation (M))|F}[PA]VQ{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}TVQ{I|L};[Y{I|L}]WY[PA]V[AG]{I|L};{[QN]|[E{I|L}]|[KN]}[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}TV[AG]{I|L} 4.0025;3.4797;3.2029;2.8528;2.6801;2.6158;2.5669;2.0532;1.7673 +;-;-;-;-;-;-;-;- + 245 NaN NaN 185074.3 NaN 18883 4419 23303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23305 93.159 NaN 308470 35 0 55089 0.261 + 29174 TYISFPLEL 9 65 541.791363440751 1081.5681739483018 2 541.7921142578125 MULTI HCD FTMS 0 0 0 23303 71419.6640625 0.4098315361815071 -1 0.02588653564453125 2 Unmodified _TYISFPLEL_ ENSG00000273820|ENST00000621775|USP27X 81.89019881105858 0.005240739447516426 2 [YT]{I|L}S{M(Oxidation (M))|F}[{I|L}P]E{I|L} 9 0 + 83.254 0 0 7.6976 7.6976 95.438 0 0 0 19.621892823592972 54.62144052772942 19.621892823592972 33.22174065147564 0 2.110924374808178 1.3979400086720375 1.2302046884880937 0 + + [YT]{I|L}S{M(Oxidation (M))|F}[{I|L}P]E{I|L};[YT]{I|L}DT[{I|L}P]{M(Oxidation (M))|F}{I|L};[YT]{I|L}DTAA[KS]{I|L};[YT]{I|L}D[{I|L}V][{M(Oxidation (M))|F}V]{I|L};[YT]{I|L}[{I|L}V][MT]E{I|L};{[QN]|[E{I|L}]|[KN]}P[RH]C[KS]{I|L};[YT]{I|L}[{I|L}V]D{I|L}[{M(Oxidation (M))|F}V];[{M(Oxidation (M))|F}E]{[QD]|[EN]|[WG]|[KD]|[RS]}[RK]{M(Oxidation (M))|F}{I|L};{[QN]|[E{I|L}]|[KN]}P[RH][KG][{M(Oxidation (M))|F}V] 7.6976;4.6259;4.2894;3.4278;2.5992;2.3718;2.1553;1.0622;0.2861 +;-;-;-;-;-;-;-;- + 532 NaN NaN 131619.4 NaN 18884 4419 23303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23307 93.164 NaN 1727500 35 0 491980 0.327 + 6120 FPEGLFYEF 9 67 574.7685982649667 1147.5226435967334 2 574.768798828125 MULTI HCD FTMS 0 0 0 23306 1230633 0.3765657018156048 -17 0.40575408935546875 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 107.99703571036002 0.003269392969029945 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 93.012 0 0 8.1055 8.1055 95.493 0 0 0 22.26203644159419 62.834778045573074 22.26203644159419 25.083559388717376 0 2.4247425010840047 0 1.892159058960253 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}EY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.1055;5.9196 -;- 225 NaN NaN 353266.5 NaN 18885 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23308 93.169 NaN 1557300 35 0 182270 0.261 + 5094 FEFEPFLQ 8 88 528.7556106842984 1055.4966684353967 2 528.7557983398438 MULTI HCD FTMS 0 0 0 23306 1038861 0.40607803077009674 7 -0.143829345703125 2 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 100.37149154755038 0.04048324805386337 2 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 63.039 0 0 5.9725 5.9725 89.963 0 0 0 5.268477219983225 24.282500096089933 5.268477219983225 12.004412890910956 0 1.9731975075880328 0 0.816901560044258 0.2742275032520141 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}{I|L}Q;[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}AAV;[{M(Oxidation (M))|F}E]PQ{I|L}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PQ{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE[Q{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PQ{M(Oxidation (M))|F}{I|L}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}E{I|L};[{M(Oxidation (M))|F}E]PQ{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L} 5.9725;4.8351;4.7386;3.6942;3.2666;3.1589;3.1559;3.1282;3.0492;3.0184 -;-;-;-;-;-;-;-;-;- 1932 NaN NaN 327985.2 NaN 18886 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23309 93.172 NaN 1080100 35 0 229110 0.261 + 30646 VPDPFFVEL 9 63 531.7795897272732 1061.5446265213463 2 531.7789916992188 MULTI HCD FTMS 0 0 0 23306 769443.1875 0.5120557436624056 7 -0.143829345703125 3 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 58.678817012210395 0.019429721296335044 2 {M(Oxidation (M))|F}VE{I|L} 4 5 45.433 0 0 4.2799 0 0 555.2687876916627 0 555.2687876916627 0 23.76069333124654 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.2799 + + 378 NaN NaN 249958.2 NaN 18887 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23310 93.175 NaN 758200 35 0 93110 0.261 + 6306 FPFPVTVSL 9 62 503.78403799897285 1005.5535230647457 2 503.78424072265625 MULTI HCD FTMS 0 0 0 23306 591942.625 0.9083018221214989 7 -0.143829345703125 4 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 74.42276476219924 0.007657080072768255 2 {[TV]|[{I|L}S]}V[C(Carbamidomethyl (C))K]TVS{I|L} 9 5 + 67.954 0 0 6.7579 6.7579 91.505 0 0 0 12.899920289665431 43.99674684468792 12.899920289665431 12.781512503836439 0 1.3807196863200843 1.6989700043360187 0.8494850021680094 0 {[TV]|[{I|L}S]}V[C(Carbamidomethyl (C))K]TVS{I|L};{[TV]|[{I|L}S]}VT[C(Carbamidomethyl (C))K]VS{I|L};[VS]{I|L}[C(Carbamidomethyl (C))K]TVS{I|L};{[TV]|[{I|L}S]}VE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L};[VS]{I|L}T[C(Carbamidomethyl (C))K]VS{I|L};[VS]{I|L}E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L} 6.7579;5.4868;4.7689;3.9229;3.4978;1.9339 -;-;-;-;-;- 196 NaN NaN 209422.5 NaN 18888 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23311 93.179 NaN 315100 35 0 61633 0.261 -1 IFLCHVMLF 9 50 598.3046819796541 NaN 0 598.2872924804688 PEAK HCD FTMS 0 0 0 23306 6434.44140625 0.3423300732784957 1 -0.03924560546875 5 Carbamidomethyl (C),Oxidation (M) _IFLC(Carbamidomethyl (C))HVM(Oxidation (M))LF_ ENST00000515359.6_1_3:49571617-49571749:+|nuORF 5.230669730166228 0.26989974671959066 2 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.91823 0 0 165.11442802088146 766.3051692134907 931.4195972343721 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.91823 + + 8 + NaN NaN 141650.1 NaN 18889 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23312 93.182 NaN 309740 35 0 48483 0.261 + 26290 SRLATTHQIE 10 59 578.3114743123667 NaN 0 578.2916259765625 PEAK HCD FTMS 0 0 0 23306 13797.109375 0.6857330346083506 2 -0.0464630126953125 6 Unmodified _SRLATTHQIE_ REV__ENSG00000141569|ENST00000269383|TRIM65 13.042465956692817 0.3290217458104555 2 E{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}P{I|L} 6 -1 17.924 0 0 1.5524 0 0 131.13460775895015 274.0830477350219 405.2176554939721 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}P{I|L} 1.5524 - 138 + NaN NaN 141022 NaN 18890 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23313 93.185 NaN 278230 35 0 62459 0.261 -1 CCRGCCVLAC 10 57 601.2240900903836 1200.433627247567 2 601.2245483398438 MULTI HCD FTMS 0 0 0 23306 77157.03125 0.34214811967330383 -17 0.40575408935546875 7 3 Carbamidomethyl (C) _CC(Carbamidomethyl (C))RGC(Carbamidomethyl (C))C(Carbamidomethyl (C))VLAC_ chr8:144359726-144360803|190|11.24|0.17|6.03|+|1|SLC52A2,SLC52A2|1;chr8:144359747-144360803|135|25.64|0.28|6.54|+|1|SLC52A2,SLC52A2|1;chr8:144360493-144360803|204|10.08|0.55|4.19|+|1|SLC52A2,SLC52A2|1;ENST00000526752.1_1_8:145582883-145584502:+|nuORF 1.4819007175156935 0.4674597685733628 2 M{I|L} 2 -1 16.198 0 0 1.3493 0 0 0 953.3180481980187 953.3180481980187 10.713337517843655 0 0 0 0 0 0 0 0 M{I|L} 1.3493 - 14 + NaN NaN 132679.1 NaN 18891 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23314 93.189 NaN 119610 35 0 7831.6 0.264 -1 0 50 451.93253336616567 1352.775770698697 3 451.9327087402344 MULTI HCD FTMS 0 0 0 23306 108532.046875 0.3857929592246607 28 -0.6903839111328125 8 NaN NaN 2 Y 1 -1 6.9897 0 0 0.51669 0 0 1026.5825161594375 160.1091707818969 1186.6916869413344 0 0 0 0 0 0.5 0 0 0 Y 0.51669 - 3 + NaN NaN 104279.8 NaN 18892 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23315 93.192 NaN 98463 35 0 14342 0.261 + 4032 ERVLRSIEQKL 11 47 457.6082075322928 NaN 0 457.60772705078125 PEAK HCD FTMS 0 0 0 23306 37823.7578125 0.5940282106410565 7 -0.143829345703125 9 Unmodified _ERVLRSIEQKL_ REV__ENSG00000178573|ENST00000326043|MAF;REV__nc|ENSG00000178573|O75444|MAF 0.5059551277355931 0.3406848944787997 2 {M(Oxidation (M))|F}C(Carbamidomethyl (C)) 2 -1 6.4537 0 0 0.70671 0 0 474.02743693782935 129.05571924381096 603.0831561816403 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}C(Carbamidomethyl (C)) 0.70671 - 3 + NaN NaN 102548.4 NaN 18893 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23316 93.195 NaN 270920 35 0 24174 0.261 + 32466 WEDIFSGDF 9 54 558.2355934038619 1114.4566338745237 2 559.7304077148438 MULTI HCD FTMS 0 0 0 23306 21316.390625 0.7944539879122653 3 -0.062225341796875 10 Unmodified _WEDIFSGDF_ ENST00000439871.1_1_2:218925948-218930359:-|nuORF 16.942295170755138 0.21397866736869717 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[YQ]S{M(Oxidation (M))|F} 7 6 43.276 0 0 3.8831 0 0 162.09226819360816 0 162.09226819360816 0 27.03356966489771 0 0 0 0 0 1.1549471895720984 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[YQ]S{M(Oxidation (M))|F} 3.8831 - 114 + NaN NaN 143040.2 NaN 18894 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23317 93.199 NaN 76216 35 0 24623 0.261 + 482 ALTRPIKIEKV 11 35 634.4086932011411 NaN 0 634.8197631835938 PEAK HCD FTMS 0 0 0 23306 14137.9326171875 0.9747648083559177 -1 0.00963592529296875 11 Unmodified _ALTRPIKIEKV_ REV__ENST00000381596.1_1_20:1586507-1600590:-|nuORF 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108347.5 NaN 18895 4420 23306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23319 93.204 NaN 88129 35 0 15960 0.327 + 31286 VWFNIGSVDTF 11 38 642.8165521351833 1283.6185513371665 2 642.8167724609375 MULTI HCD FTMS 0 0 0 23318 27100.59375 0.09518185350305888 10 -0.22283935546875 1 Unmodified _VWFNIGSVDTF_ ENSG00000141385|ENST00000269143|AFG3L2 40.72490554402381 0.13228144127095398 2 VSG{I|L}NEWV 8 9 70.158 0 0 5.4656 0 0 381.15281874824376 0 381.15281874824376 0 49.188747361843 0 0 0 1.8494850021680094 0 0.3807196863200844 0 VSG{I|L}NEWV 5.4656 - 115 NaN NaN 106859.3 NaN 18896 4421 23318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23321 93.21 NaN 377820 35 0 20859 0.327 -1 0 85 437.25721486719715 1308.7498152017915 3 437.2572937011719 MULTI HCD FTMS 0 0 0 23320 252330.96875 0.5665719244935731 19 -0.44087982177734375 1 NaN NaN 2 QVV[WH]{I|L}{[HG]|PP}N 9 -1 22.858 0 0 1.7466 0 0 220.13057143379064 0 220.13057143379064 0 12.127750241648203 0 0 0 1.7302046884880937 0 0 0 QVV[WH]{I|L}{[HG]|PP}N 1.7466 - 64 NaN NaN 140439.6 NaN 18897 4422 23320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23322 93.215 NaN 393930 35 0 59431 0.261 + -1 FPCCFLTWP 9 70 585.7594676403127 1169.5043823474252 2 585.760009765625 MULTI HCD FTMS 0 0 0 23320 187956.03125 0.3657808252318395 -14 0.30426025390625 2 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 18.13498045792455 0.20367413111508956 2 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 61.591 0 0 5.2664 0 0 316.102830955275 0 316.102830955275 0 33.213862293172326 0 0 0 1.1505149978319906 0 0.7134679910804405 0 Y{M(Oxidation (M))|F}{I|L}GEPE 5.2664 - 578 NaN NaN 146156.7 NaN 18898 4422 23320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23323 93.218 NaN 337170 35 0 38411 0.261 -1 IYSLMPLLL 9 69 539.814307348548 1077.614061763896 2 539.8143310546875 MULTI HCD FTMS 0 0 0 23320 85411.796875 0.6369784014721566 -8 0.17015838623046875 3 Oxidation (M) _IYSLM(Oxidation (M))PLLL_ ENSG00000151893|ENST00000369151|CACUL1;ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-2|CACUL1;nc|ENSG00000151893|Q86Y37-4|CACUL1 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}[{I|L}P]{I|L}{I|L} 7 -1 21.827 0 0 2.0255 0 0 276.1105897594043 0 276.1105897594043 0 14.837513372786475 0 0 0 0.8807196863200843 0 0.3054621874040891 0 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}[{I|L}P]{I|L}{I|L} 2.0255 - 99 NaN NaN 151181.4 NaN 18899 4422 23320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23324 93.222 NaN 70839 35 0 5424.4 0.262 + 20977 PLLDNSNH 8 53 455.22549421635205 NaN 0 455.2248229980469 PEAK HCD FTMS 0 0 0 23320 30546.88671875 0.698587112573518 45 -0.967926025390625 4 Unmodified _PLLDNSNH_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 6.354104778181461 0.38822285293237185 2 {I|L} 1 -1 3.4949 0 0 0.38471 0 0 585.2157151399323 207.11367212467033 792.3293872646026 0 0 0 0 0 0 0 0 0 {I|L} 0.38471 + + 2 + NaN NaN 110435.2 NaN 18900 4422 23320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23326 93.227 NaN 244110 35 0 31230 0.327 + 2089 DFAVFQYEF 9 56 583.2637184377152 NaN 0 583.2822875976562 PEAK HCD FTMS 0 0 0 23325 9861.015625 0.41571852831141953 -5 0.097747802734375 1 Unmodified _DFAVFQYEF_ REV__ENSG00000146530|ENST00000275358|VWDE;REV__nc|ENSG00000146530|Q8N2E2-3|VWDE 12.531546534597751 0.23452071659215576 2 {M(Oxidation (M))|F}EY 3 -1 19.253 0 0 1.6533 0 0 560.2585007320046 162.0556582086547 722.3141589406592 0 0 0 0 0 0 0 0.3054621874040891 0 {M(Oxidation (M))|F}EY 1.6533 - 88 + NaN NaN 127328.9 NaN 18901 4423 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23327 93.231 NaN 106650 35 0 15584 0.261 + 22807 QYLFPSFETF 10 48 639.8058871122373 1277.5972212912745 2 639.8060302734375 MULTI HCD FTMS 0 0 0 23325 23604.8515625 0.2702280098946374 6 -0.14408111572265625 2 Unmodified _QYLFPSFETF_ ENSG00000134539|ENST00000336164|KLRD1;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;ENST00000543420.5_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-2|KLRD1;nc|ENSG00000134539|Q13241-3|KLRD1 34.93206674587334 0.18938571726943593 2 RET{M(Oxidation (M))|F} 4 7 46.186 0 0 3.615 0 0 726.3235897350329 0 726.3235897350329 0 41.5815315012393 0 0 0 1.4247425010840047 0 0 0 RET{M(Oxidation (M))|F} 3.615 - 25 NaN NaN 106085.5 NaN 18902 4423 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23328 93.235 NaN 114290 35 0 18011 0.261 + 28944 TWYPVSIPAF 10 40 590.8054365670644 1179.5963202009286 2 590.8057250976562 MULTI HCD FTMS 0 0 0 23325 22424.673828125 0.014842945504168578 47 -1.0206985473632812 3 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 29.081581746732265 0.240155558137004 2 V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S 5 8 37.575 0 0 3.1854 0 0 0 643.2871798150999 643.2871798150999 27.84318117920506 0 0 0 0 1.305462187404089 0 0.3807196863200844 0 V{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S 3.1854 - 41 + NaN NaN 112655.9 NaN 18903 4423 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23329 93.238 NaN 75343 35 0 19371 0.261 + 10907 IWPPFQPPAW 10 33 619.8210523161814 1237.6275516991627 2 619.8206787109375 MULTI HCD FTMS 0 0 0 23325 22376.94140625 0.24108066310284296 11 -0.25827789306640625 4 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102687.6 NaN 18904 4423 23325 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23331 93.243 NaN 104110 35 0 13038 0.327 + 30590 VPAAILGLVL 10 37 483.3233065658162 964.6320601984324 2 483.3232727050781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VPAAILGLVL_ tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1 7.910154910731844 0.4334339971971892 2 V{I|L} 2 8 25.969 0 0 2.6921 0 0 734.4692064173684 0 734.4692064173684 0 19.815534464597704 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 9 NaN NaN 107507 NaN 18905 4424 23330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23332 93.247 NaN 292830 35 0 45928 0.261 + 20262 NYLPFIMEL 9 59 578.2912552508974 1154.5679575685947 2 578.29150390625 MULTI HCD FTMS 0 0 0 23330 71996.0546875 0.04303437652585211 45 -0.981658935546875 2 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 60.07390631473393 0.0174780869009295 2 [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L} 9 0 + 62.36 0 0 5.4012 5.4012 92.428 0 0 0 13.529747636836959 42.43862361869317 13.529747636836959 62.360148676060575 0 2.0114393726401687 0 0 0.6382104921644451 + + [YN]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}E{I|L} 5.4012 + + 221 NaN NaN 132176.5 NaN 18906 4424 23330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23333 93.251 NaN 254060 35 0 16509 0.261 + 13817 KYPSPFFVF 9 72 566.2974339066556 1130.580314880111 2 566.2977294921875 MULTI HCD FTMS 0 0 0 23330 43386.1484375 0.19050433766258001 22 -0.55987548828125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.13340543277302316 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 32.307 0 0 2.8576 0 0 719.3668080060562 0 719.3668080060562 0 15.140143618001215 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.8576 + + 403 NaN NaN 144700.7 NaN 18907 4424 23330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23334 93.254 NaN 141390 35 0 36314 0.262 + 19552 NSRGQHQQ 8 46 477.7285424069774 953.4425318807548 2 477.7286682128906 MULTI HCD FTMS 0 0 0 23330 13733.9580078125 0.19824855112334672 -3 0.03917694091796875 4 Unmodified _NSRGQHQQ_ ENST00000266557.3_1_12:6554080-6554389:+|nuORF 0.7936320650641473 0.540814922690045 2 W 1 8 8.9794 0 0 0.94179 0 0 359.07010864032355 405.2620028131469 764.3321114534705 0 0 0 0 0 0.5 0 0 0 W 0.94179 - 12 + NaN NaN 111900 NaN 18908 4424 23330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23335 93.258 NaN 82450 35 0 8458.4 0.261 + 25895 SNISVYTFVSM 11 27 624.3028017780233 1246.5910506228465 2 624.3037109375 MULTI HCD FTMS 0 0 0 23330 17941.10546875 0.3576816358901886 -3 0.03917694091796875 5 Unmodified _SNISVYTFVSM_ REV__ENSG00000138650|ENST00000264360|PCDH10;REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 8.97624648632007 0.3788720818291249 2 G{I|L}[C(Carbamidomethyl (C))R]V{[MS]|[{M(Oxidation (M))|F}A]} 7 -1 35.986 0 0 2.8868 0 0 425.19627577949376 0 425.19627577949376 0 35.985994592184554 0 0 0 2 0 0 0 G{I|L}[C(Carbamidomethyl (C))R]V{[MS]|[{M(Oxidation (M))|F}A]} 2.8868 - 32 NaN NaN 99755.6 NaN 18909 4424 23330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23337 93.262 NaN 336200 35 0 60596 0.326 + 5566 FLLALEPEL 9 49 522.8021507419635 1043.5897485507269 2 522.8021850585938 MULTI HCD FTMS 0 0 0 23336 79585.6875 0.047147276725494854 21 -0.540283203125 1 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 39.957323273324995 0.06554068735427583 2 E{I|L}A{[QN]|[E{I|L}]|[KN]}{I|L} 6 4 36.859 0 0 3.5319 0 0 357.18933694504494 0 357.18933694504494 0 26.40092514408778 0 0 0 1.75 0 0.3494850021680094 0 E{I|L}A{[QN]|[E{I|L}]|[KN]}{I|L} 3.5319 - 72 NaN NaN 136298.2 NaN 18910 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23338 93.267 NaN 184700 35 0 34483 0.261 + 7513 FWPSLPSYL 9 46 555.2862708355646 1108.557988737929 2 555.2854614257812 MULTI HCD FTMS 0 0 0 23336 20103.6875 0.3910125249817753 -2 0.03578948974609375 2 Unmodified _FWPSLPSYL_ ENSG00000166670|ENST00000279441|MMP10 21.74664581756881 0.17247014374749275 2 G 1 9 8.9794 0 0 0.81001 0 0 775.4109988471072 273.1102388971313 1048.5212377442385 0 0 0 0 0 0.5 0 0 0 G 0.81001 - 2 + NaN NaN 124661.4 NaN 18911 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23339 93.27 NaN 69570 35 0 4845.5 0.262 + 20978 PLLDNSNH 8 46 455.22549421635205 NaN 0 455.2266540527344 PEAK HCD FTMS 0 0 0 23336 28287.33984375 0.6469127687471184 48 -1.0534591674804688 3 Unmodified _PLLDNSNH_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 2.8892196856762586 0.38822285293237185 2 {I|L} 1 -1 5.4846 0 0 0.60374 0 0 585.2144028840729 207.11387048892814 792.328273373001 0 0 0 0 0 0 0 0 0 {I|L} 0.60374 + + 3 + NaN NaN 98680.8 NaN 18912 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23340 93.274 NaN 142170 35 0 87217 0.261 + 3597 EKKKTYIMKP 10 24 633.3694429355902 1264.7243329379803 2 633.3703002929688 MULTI HCD FTMS 0 0 0 23336 22539.83203125 0.45058032686651606 -5 0.09801483154296875 4 Unmodified _EKKKTYIMKP_ ENST00000272793.9_1_2:170938445-170938493:+|nuORF 0.6268255596534771 0.47198581731947004 2 M 1 9 3.4949 0 0 0.27633 0 0 686.3635674123929 444.3025301568969 1130.6660975692898 0 0 0 0 0 0 0 0 0 + M 0.27633 + + 1 + NaN NaN 125298.5 NaN 18913 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23341 93.277 NaN 103430 35 0 11221 0.261 + 28945 TWYPVSIPAF 10 39 590.8054365670644 1179.5963202009286 2 590.8047485351562 MULTI HCD FTMS 0 0 0 23336 20425.541015625 0.01351971469069218 49 -1.0895538330078125 5 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 19.256988751693697 0.33098864134661865 2 [W{M(Oxidation (M))|F}]R{M(Oxidation (M))|F}[HQ]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 7 + 25.15 0 0 2.1321 2.1321 87.727 0 0 0 16.298793729568857 5.457574905606748 5.457574905606748 25.150312510170778 0 0.5 0 0.3494850021680094 0 [W{M(Oxidation (M))|F}]R{M(Oxidation (M))|F}[HQ]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.1321 - 43 + NaN NaN 113477.5 NaN 18914 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23342 93.28 NaN 105260 35 0 9362.8 0.261 + -1 YLCCCSCTF 9 47 607.2097696842415 NaN 0 606.810546875 PEAK HCD FTMS 0 0 0 23336 14512.8466796875 1 0 0 6 3 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))SCTF_ REV__ENSG00000164054|ENST00000296444|SHISA5;REV__ENST00000460758.1_1_3:48511100-48514492:-|nuORF;REV__ENST00000465449.5_1_3:48510508-48514931:-|nuORF;REV__ENST00000466424.5_1_3:48509548-48511229:-|nuORF;REV__ENST00000494854.5_1_3:48510739-48514492:-|nuORF;REV__nc|ENSG00000164054|Q8N114-2|SHISA5;REV__nc|ENSG00000164054|Q8N114-3|SHISA5;REV__nc|ENSG00000164054|Q8N114-4|SHISA5;REV__nc|ENSG00000164054|Q8N114-5|SHISA5;REV__SCMH1-SHISA5|1|fusion 0.6014990680409731 0.29233206172879045 2 W 1 -1 6.9897 0 0 0.57652 0 0 634.1208240421741 389.18332849674067 1023.3041525389149 0 0 0 0 0 0 0 0 0 W 0.57652 - 25 + NaN NaN 102043.5 NaN 18915 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23343 93.284 NaN 59525 35 0 11821 0.261 + 10908 IWPPFQPPAW 10 32 619.8210523161814 1237.6275516991627 2 619.821044921875 MULTI HCD FTMS 0 0 0 23336 12193.6669921875 0.13136993437855404 13 -0.324127197265625 7 Unmodified _IWPPFQPPAW_ ENST00000524727.5_1_11:47194869-47198404:-|nuORF 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117957.2 NaN 18916 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23344 93.287 NaN 138480 35 0 34840 0.263 + 8115 GLKTRCSSC 9 48 477.7285424069774 953.4425318807548 2 477.72894287109375 MULTI HCD FTMS 0 0 0 23336 11981.2275390625 0.17294803136482031 -2 0.03578948974609375 8 Unmodified _GLKTRCSSC_ ENSG00000198795|ENST00000361524|ZNF521 1.6526216038709556 0.33848895094777925 2 {[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 3 9 5.9421 0 0 0.62323 0 0 0 541.2899985808141 541.2899985808141 0.45757490560674974 0 0 0 0 0 0 0 0 {[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F} 0.62323 - 7 NaN NaN 111881.8 NaN 18917 4425 23336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23346 93.292 NaN 199120 35 0 25743 0.326 + 14580 LFLDPAPLL 9 42 499.7996827583448 997.5848125834896 2 499.7999572753906 MULTI HCD FTMS 0 0 0 23345 57405.125 0.30111841373546516 9 -0.219207763671875 1 Unmodified _LFLDPAPLL_ REV__ENST00000332065.9_1_17:74078001-74078805:-|nuORF 15.847184025352803 0.2234401846867398 2 AP{I|L}{I|L} 4 -1 35.918 0 0 3.6005 0 0 585.3157085929442 0 585.3157085929442 0 28.927900303521312 0 0 0 1 0 0 0 AP{I|L}{I|L} 3.6005 + + 13 NaN NaN 118565.6 NaN 18918 4426 23345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23347 93.296 NaN 87932 35 0 9992.7 0.261 -1 0 36 494.3475942304422 NaN 0 494.3472595214844 PEAK HCD FTMS 0 0 0 23345 21042.44921875 0.6415237989531245 -2 0.04914093017578125 2 NaN NaN 2 Q 1 -1 3.4949 0 0 0.3542 0 0 439.3437347481907 416.24570642642817 855.5894411746189 0 0 0 0 0 0 0 0 0 Q 0.3542 - 2 + NaN NaN 113016.7 NaN 18919 4426 23345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23348 93.3 NaN 207040 35 0 15213 0.261 + 16954 LYHNRREI 8 57 550.8039797123153 1099.5934064914304 2 551.2940063476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LYHNRREI_ REV__ENSG00000140807|ENST00000268459|NKD1 18.13498045792455 0.4603629008820478 2 [Y{I|L}]HAAVQW 8 -1 34.602 0 0 3.1468 0 0 0 128.09136429460082 128.09136429460082 24.14442544444192 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]HAAVQW 3.1468 - 131 NaN NaN 131982.5 NaN 18920 4426 23345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23349 93.303 NaN 80407 35 0 18599 0.261 + -1 YQVMDKVLKE 10 42 634.8311157226562 NaN 0 634.8311157226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _YQVM(Oxidation (M))DKVLKE_ REV__AFM|p.E72Q|1|0.12|ENSG00000079557|chr4:73484334-73484334|G/C|missense_variant 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119450.3 NaN 18921 4426 23345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23351 93.308 NaN 2933700 35 0 814990 0.327 + 6121 FPEGLFYEF 9 67 574.7685982649667 1147.5226435967334 2 574.7688598632812 MULTI HCD FTMS 0 0 0 23350 2077877.25 0.635816937245246 -10 0.18900299072265625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 115.6920309560759 0.002013163348980568 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 97.739 0 0 8.5174 8.5174 96.314 0 0 0 20.056584229283843 72.33288122256525 20.056584229283843 27.341284356197235 0 2.805462187404089 0 1.9049471895720984 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}EY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ET]|[MV]}[TP]P{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.5174;6.1348;2.4427 -;-;- 579 NaN NaN 543405 NaN 18922 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23352 93.313 NaN 453760 35 0 39399 0.261 + 5095 FEFEPFLQ 8 76 528.7556106842984 1055.4966684353967 2 528.755859375 MULTI HCD FTMS 0 0 0 23350 188523.34375 0.07369146419414534 14 -0.34351348876953125 2 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 52.268347100219714 0.11372384022409306 2 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 8 -1 + 48.677 0 0 4.6118 4.6118 87.077 0 0 0 5.484550065040281 36.625853418640375 5.484550065040281 9.262137858390808 0 1.9291746928241125 0 0 0 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}PE[Q{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}[YE]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[YE]{I|L};{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}[YE]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P{M(Oxidation (M))|F}EE;{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}[RD]N[{M(Oxidation (M))|F}V];[{M(Oxidation (M))|F}T]{[WT]|[RM]}P[YE]{I|L};[{M(Oxidation (M))|F}E]{I|L}[EP]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F} 4.6118;3.7343;2.1948;1.5096;0.86369;0.86369;0.81407;0.80275;0.46012;0.087185 -;-;-;-;-;-;-;-;-;- 354 NaN NaN 158085 NaN 18923 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23353 93.316 NaN 335100 35 0 67996 0.261 + -1 LFKCAGYVMF 10 55 597.7894070761101 1193.5642612190202 2 598.2874755859375 MULTI HCD FTMS 0 0 0 23350 165261.421875 0.16797542176132546 -16 0.3262176513671875 3 Oxidation (M) _LFKCAGYVM(Oxidation (M))F_ REV__ENSG00000059378|ENST00000263549|PARP12 7.289230182591677 0.43672065049472153 2 [Y{I|L}]G[MT]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L} 9 -1 14.709 0 0 1.2324 0 0 0 161.06142388635922 161.06142388635922 0.004410582708203492 0 0 0 0 0.5 0 0.6989700043360187 0 [Y{I|L}]G[MT]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}{I|L} 1.2324 - 59 NaN NaN 151475.6 NaN 18924 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23354 93.32 NaN 266720 35 0 46658 0.261 + 30647 VPDPFFVEL 9 42 531.7795897272732 1061.5446265213463 2 531.7792358398438 MULTI HCD FTMS 0 0 0 23350 123526.3046875 0.08220535945498472 14 -0.34351348876953125 4 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}VE{I|L} 4 5 43.047 0 0 4.0552 0 0 555.2692809155607 0 555.2692809155607 0 43.047444008242906 0 0 0 1.2614393726401687 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.0552 + + 28 NaN NaN 128961 NaN 18925 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23355 93.323 NaN 396630 35 0 48739 0.261 + 6307 FPFPVTVSL 9 56 503.78403799897285 1005.5535230647457 2 503.7841491699219 MULTI HCD FTMS 0 0 0 23350 159397.96875 0.24458699094036476 14 -0.34351348876953125 5 Unmodified _FPFPVTVSL_ ENSG00000127526|ENST00000595753|SLC35E1 46.020951573049366 0.037705236580089195 2 TVS{I|L} 4 5 48.928 0 0 4.8658 0 0 587.3092412031893 0 587.3092412031893 0 35.43305028184122 0 0 0 1.274227503252014 0 0.4247425010840047 0 + TVS{I|L} 4.8658 + + 72 NaN NaN 157622.6 NaN 18926 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23356 93.326 NaN 265410 35 0 46758 0.261 + 2090 DFAVFQYEF 9 54 583.2637184377152 NaN 0 583.2813110351562 PEAK HCD FTMS 0 0 0 23350 14166.638671875 0.5972340379281691 -1 0.016265869140625 6 Unmodified _DFAVFQYEF_ REV__ENSG00000146530|ENST00000275358|VWDE;REV__nc|ENSG00000146530|Q8N2E2-3|VWDE 12.531546534597751 0.23452071659215576 2 {M(Oxidation (M))|F}YE 3 -1 20.234 0 0 1.7375 0 0 560.2596286536998 162.05562769107658 722.3152563447763 0 0 0 0 0 0 0 0.8807196863200843 0 {M(Oxidation (M))|F}YE 1.7375 - 121 + NaN NaN 134546.8 NaN 18927 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23357 93.33 NaN 61558 35 0 10067 0.261 + 23681 RQKGNRNTHK 10 33 619.8440695534267 NaN 0 619.820068359375 PEAK HCD FTMS 0 0 0 23350 5120.19140625 0.31295604938318766 -2 0.04581451416015625 7 Unmodified _RQKGNRNTHK_ ENSG00000169018|ENST00000306917|FEM1B 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102041.5 NaN 18928 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23358 93.333 NaN 114150 35 0 23076 0.262 + 34151 YPCIAPVLF 9 55 511.77122810749944 NaN 0 511.7715148925781 PEAK HCD FTMS 0 0 0 23350 15769.8408203125 0.4720755598405709 -2 0.04581451416015625 8 Unmodified _YPCIAPVLF_ ENST00000368590.9_3_6:116894024-116894096:+|nuORF 9.347437153973935 0.2499504662953367 2 {I|L}{M(Oxidation (M))|F} 2 7 14.464 0 0 1.4159 0 0 165.08081026771498 593.2746676080686 758.3554778757837 0 0 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.4159 + + 8 + NaN NaN 107119.8 NaN 18929 4427 23350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23360 93.338 NaN 487450 35 0 57891 0.327 + 26155 SPMDIFDMF 9 59 559.7301289045481 1117.4457048758961 2 559.73046875 MULTI HCD FTMS 0 0 0 23359 244949.578125 1 0 0 1 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 78.14939416004806 0.006451203201226903 2 S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 68.225 0 0 6.1054 0 0 343.11924941230626 0 343.11924941230626 0 59.2279848331593 0 0 0 2.4247425010840047 0 1.1861818737241734 0 S{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1054 - 356 NaN NaN 174485.1 NaN 18930 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23361 93.342 NaN 375080 35 0 98923 0.261 + 1647 CCCCPTRRME 10 57 601.2240900903836 1200.433627247567 2 601.2246704101562 MULTI HCD FTMS 0 0 0 23359 107736.5390625 0.47775107029333536 -9 0.183074951171875 2 Unmodified _CCCCPTRRME_ ENST00000481801.5_1_2:134877617-135011878:+|nuORF 2.9952420565917617 0.4594494122822477 2 PE 2 8 8.6721 0 0 0.72242 0 0 956.3431263654312 0 956.3431263654312 0 3.1875876262441256 0 0 0 0 0 0 0 PE 0.72242 - 14 NaN NaN 160510.2 NaN 18931 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23362 93.346 NaN 452470 35 0 66810 0.261 + 5791 FPATPLLDYAL 11 59 610.8320231005227 1219.6494932678454 2 610.8322143554688 MULTI HCD FTMS 0 0 0 23359 115802.8125 0.5449273657373623 -3 0.0754241943359375 3 Unmodified _FPATPLLDYAL_ ENSG00000131473|ENST00000352035|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF;nc|ENSG00000131473|P53396-2|ACLY;nc|ENSG00000131473|P53396-3|ACLY 53.40400417844725 0.06744007266772457 2 P{I|L}{I|L}DYA{I|L} 7 4 60.508 0 0 4.9611 0 0 416.20579726386876 0 416.20579726386876 0 53.51805419770287 0 0 0 2.0994850021680094 0 0.3807196863200844 0 + P{I|L}{I|L}DYA{I|L} 4.9611 + + 114 NaN NaN 160465.9 NaN 18932 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23363 93.349 NaN 318160 35 0 65296 0.261 -1 FESYYFPMS 9 47 593.7421763162799 1185.4697996993598 2 593.7423095703125 MULTI HCD FTMS 0 0 0 23359 99184.5390625 0.6527917036623859 -8 0.17343902587890625 4 Oxidation (M) _FESYYFPM(Oxidation (M))S_ CON__Q2TBQ1 4.3292370932331545 0.3181982124262546 2 K 1 -1 5.4846 0 0 0.46265 0 0 611.1236215761161 443.22972829136836 1054.3533498674844 0 0 0 0 0 0 0 0 0 K 0.46265 - 6 + NaN NaN 149963.5 NaN 18933 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23364 93.353 NaN 170930 35 0 36072 0.262 + 25550 SFLYCCDF 8 49 499.1932056664753 996.3718583997506 2 499.1933898925781 MULTI HCD FTMS 0 0 0 23359 97412.9296875 0.9489295099809231 -8 0.17343902587890625 5 Unmodified _SFLYCCDF_ ENSG00000123600|ENST00000375258|METTL8;ENST00000428182.2_1_12:15408356-15408710:-|nuORF;ENST00000438609.5_1_2:172180771-172195744:-|nuORF;nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 15.485 0 0 1.5541 0 0 831.2932278839288 0 831.2932278839288 0 7.257724967479859 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5541 + + 16 + NaN NaN 115161.7 NaN 18934 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23365 93.356 NaN 97925 35 0 5287.2 0.261 -1 0 49 451.93253336616567 1352.775770698697 3 451.93243408203125 MULTI HCD FTMS 0 0 0 23359 64820.48828125 0.23041386127373614 36 -0.7536544799804688 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 102740.7 NaN 18935 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23366 93.359 NaN 366860 35 0 52210 0.261 + 11128 IYILDPELL 9 56 544.8155699883175 1087.616587043435 2 544.8154907226562 MULTI HCD FTMS 0 0 0 23359 47078.07421875 0.11639916271322452 -9 0.183074951171875 7 Unmodified _IYILDPELL_ ENSG00000149091|ENST00000456247|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ 32.30548876998284 0.10066689432505688 2 {I|L}D[EP]{I|L}{I|L} 6 3 35.877 0 0 3.2987 0 0 389.23143202949376 0 389.23143202949376 0 30.190775249321078 0 0 0 1.6747425010840047 0 0 0 + {I|L}D[EP]{I|L}{I|L} 3.2987 + + 52 NaN NaN 144067.4 NaN 18936 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23367 93.362 NaN 61150 35 0 5744.8 0.261 + 34103 YNLYGKDIKE 10 42 621.8229107358106 NaN 0 621.8250122070312 PEAK HCD FTMS 0 0 0 23359 20336.298828125 0.6522194359943063 -2 0.04587554931640625 8 Unmodified _YNLYGKDIKE_ ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2 2.9952420565917617 0.3376207769591857 2 {I|L} 1 9 6.9897 0 0 0.56294 0 0 851.4412793800212 274.0824068658813 1125.5236862459026 0 0 0 0 0 0 0 0 0 + {I|L} 0.56294 + + 5 + NaN NaN 100226.5 NaN 18937 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23368 93.366 NaN 83614 35 0 9352.9 0.261 + 11254 IYLNEFERE 9 37 606.8002141158471 NaN 0 606.8093872070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _IYLNEFERE_ REV__ENSG00000047056|ENST00000263150|WDR37;REV__nc|ENSG00000047056|Q9Y2I8-2|WDR37;REV__nc|ENSG00000047056|Q9Y2I8-3|WDR37;REV__WDR37|p.Q64E|1|0.25|ENSG00000047056|chr10:1077958-1077958|C/G|missense_variant 4.3292370932331545 0.2742679634796037 2 W 1 -1 6.9897 0 0 0.57691 0 0 633.3016836179156 389.1820162408813 1022.4836998587969 0 0 0 0 0 0 0 0 0 W 0.57691 - 6 + NaN NaN 107047.6 NaN 18938 4428 23359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23370 93.371 NaN 562560 35 0 90823 0.327 + -1 FPCCFLTWP 9 73 585.7594676403127 1169.5043823474252 2 585.7597045898438 MULTI HCD FTMS 0 0 0 23369 304819.65625 0.5932088726735693 -7 0.15984344482421875 1 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 23.1484247019978 0.1603590852062899 2 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 73.492 0 0 6.2841 0 0 316.10334975410314 0 316.10334975410314 0 43.487219860018556 0 0 0 2.1989700043360187 0 0.7302046884880937 0 Y{M(Oxidation (M))|F}{I|L}GEPE 6.2841 - 322 NaN NaN 172178.8 NaN 18939 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23371 93.375 NaN 368900 35 0 19553 0.263 -1 0 86 437.25721486719715 1308.7498152017915 3 437.25738525390625 MULTI HCD FTMS 0 0 0 23369 199231.5 0.4473449094810773 26 -0.5837478637695312 2 NaN NaN 2 Q 1 -1 8.2268 0 0 0.6286 0 0 722.4289666683916 455.2493604712222 1177.6783271396139 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.6286 - 59 + NaN NaN 146651.7 NaN 18940 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23372 93.379 NaN 279710 35 0 48502 0.261 -1 IYSLMPLLL 9 58 539.814307348548 1077.614061763896 2 539.8146362304688 MULTI HCD FTMS 0 0 0 23369 129101.984375 0.9628081675230631 -1 0.032867431640625 3 Oxidation (M) _IYSLM(Oxidation (M))PLLL_ ENSG00000151893|ENST00000369151|CACUL1;ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-2|CACUL1;nc|ENSG00000151893|Q86Y37-4|CACUL1 34.10243960390752 0.09241788333544565 2 T{M(Oxidation (M))|F}[{I|L}P]{I|L}{I|L} 6 -1 35.054 0 0 3.253 0 0 375.2148609845719 0 375.2148609845719 0 29.569940744530356 0 0 0 1.4247425010840047 0 0.3807196863200844 0 T{M(Oxidation (M))|F}[{I|L}P]{I|L}{I|L} 3.253 - 105 NaN NaN 127513.5 NaN 18941 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23373 93.382 NaN 104750 35 0 10970 0.261 + 28946 TWYPVSIPAF 10 35 590.8054365670644 1179.5963202009286 2 590.8065185546875 MULTI HCD FTMS 0 0 0 23369 18010.1953125 0.011920991564550294 53 -1.1678009033203125 4 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 6.2057823575117 0.44245551207394906 2 [W{M(Oxidation (M))|F}]R{M(Oxidation (M))|F} 4 8 19.693 0 0 1.6694 0 0 0 540.2435396783811 540.2435396783811 12.703037561203843 0 0 0 0 0.5 0 0 0 [W{M(Oxidation (M))|F}]R{M(Oxidation (M))|F} 1.6694 - 9 + NaN NaN 102575.3 NaN 18942 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23374 93.385 NaN 31749 35 0 4943.6 0.261 + 23782 RRNLLGNRQR 10 26 641.8825780006046 1281.750603068009 2 641.8822631835938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RRNLLGNRQR_ ENST00000479293.5_1_2:73297674-73297713:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 90584 NaN 18943 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23375 93.389 NaN 56424 35 0 6475.6 0.261 + -1 YNVKWFICL 9 41 621.8229107358106 NaN 0 621.8221435546875 PEAK HCD FTMS 0 0 0 23369 26916.15234375 0.8632464466198069 -1 0.032867431640625 6 Carbamidomethyl (C) _YNVKWFIC(Carbamidomethyl (C))L_ REV__ENSG00000111335|ENST00000392583|OAS2;REV__nc|ENSG00000111335|P29728|OAS2 2.302733041254933 0.2840881193086663 2 AT 2 -1 9.464 0 0 0.76222 0 0 244.12206551283367 822.3991182916624 1066.521183804496 0 0 0 0 0 0 0 0 0 AT 0.76222 - 5 + NaN NaN 95890.3 NaN 18944 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23376 93.392 NaN 70782 35 0 9061.5 0.263 + -1 SCCYQDDC 8 49 497.1421618235493 NaN 0 496.7387390136719 PEAK HCD FTMS 0 0 0 23369 7173.279296875 0.5133840573597166 7 -0.16669464111328125 7 Carbamidomethyl (C) _SCCYQDDC(Carbamidomethyl (C))_ REV__ENSG00000164054|ENST00000296444|SHISA5;REV__nc|ENSG00000164054|Q8N114-2|SHISA5;REV__nc|ENSG00000164054|Q8N114-5|SHISA5;REV__SCMH1-SHISA5|1|fusion 0.6903765706972694 0.38822285293237185 2 C 1 -1 1.5938 0 0 0.16062 0 0 514.0438623660456 372.1929110162719 886.2367733823176 0 0 0 0 0 0 0 0 0 C 0.16062 + + 1 + NaN NaN 101757.9 NaN 18945 4429 23369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23378 93.397 NaN 466940 35 0 36134 0.327 + 3435 EFLPFHFLL 9 69 581.8180298058247 1161.6215066784494 2 581.8184204101562 MULTI HCD FTMS 0 0 0 23377 171441.78125 0.3149341054441482 -2 0.05915069580078125 1 Unmodified _EFLPFHFLL_ ENSG00000227057|ENST00000374617|WDR46 53.57557251787612 0.02656881086235134 2 VWG{M(Oxidation (M))|F} 4 8 25.918 0 0 2.2312 0 0 654.3742736532437 0 654.3742736532437 0 6.212600430434701 0 0 0 0 0 0 0 VWG{M(Oxidation (M))|F} 2.2312 - 109 + NaN NaN 166730.8 NaN 18946 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23379 93.401 NaN 416620 35 0 35547 0.261 + 742 ARRGRGFLV 9 85 516.3143345560146 1030.6141161788291 2 516.3141479492188 MULTI HCD FTMS 0 0 0 23377 179985.078125 0.18828838403658119 -6 0.15416717529296875 2 Unmodified _ARRGRGFLV_ ENST00000219476.7_1_16:2097712-2098647:+|nuORF 7.910154910731844 0.2910521888787154 2 M 1 9 6.9061 0 0 0.6701 0 0 133.11797467667913 763.4328700827601 896.5508447594393 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.6701 - 135 + NaN NaN 158943 NaN 18947 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23380 93.405 NaN 121320 35 0 21071 0.261 + 22344 QPLIIAVVL 9 34 483.3233065658162 964.6320601984324 2 483.3232727050781 MULTI HCD FTMS 0 0 0 23377 75464.84375 0.599898595742313 -7 0.1703643798828125 3 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 16.942295170755138 0.21397866736869717 2 V{I|L} 2 7 25.969 0 0 2.6921 0 0 734.4693636960646 0 734.4693636960646 0 20.48455006504028 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 3 NaN NaN 110998.3 NaN 18948 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23381 93.408 NaN 220680 35 0 14742 0.261 -1 0 80 524.8273647912825 1047.640176649365 2 524.8274536132812 MULTI HCD FTMS 0 0 0 23377 159689.4375 0.17701413137586947 -6 0.15416717529296875 4 NaN NaN 2 P 1 -1 8.2268 0 0 0.78527 0 0 554.3461530671369 393.2134188287719 947.5595718959089 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.78527 - 15 + NaN NaN 120479 NaN 18949 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23382 93.412 NaN 133470 35 0 19115 0.261 + -1 VIMFPLVM 8 41 491.26258804236875 NaN 0 491.27362060546875 PEAK HCD FTMS 0 0 0 23377 8528.109375 1 0 0 5 2 Oxidation (M) _VIM(Oxidation (M))FPLVM(Oxidation (M))_ REV__ENSG00000121318|ENST00000240619|TAS2R10 11.114462752807354 0.38822285293237185 2 V{I|L}M[HA]V 6 -1 18.416 0 0 1.8782 0 0 165.05658028898523 162.0560244195922 327.11260470857746 0 0 0 0 0 0 0 0 0 V{I|L}M[HA]V 1.8782 - 16 + NaN NaN 114976.9 NaN 18950 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23383 93.415 NaN 228960 35 0 52478 0.261 + 32715 WPPFQDLPL 9 73 556.7927115992687 1111.5708702653374 2 556.792236328125 MULTI HCD FTMS 0 0 0 23377 77169.625 0.7186383392582589 -5 0.13457489013671875 6 Unmodified _WPPFQDLPL_ ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 32.78568957990786 0.09846250359632436 2 QD{I|L}P{I|L} 5 4 42.702 0 0 3.8416 0 0 527.2504591012719 0 527.2504591012719 0 9.42037135569614 0 0 0 1.3945990182825423 0 0 0.3807196863200844 + QD{I|L}P{I|L} 3.8416 + + 618 NaN NaN 129012.9 NaN 18951 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23384 93.418 NaN 74614 35 0 5981.2 0.261 + 25896 SNISVYTFVSM 11 39 624.3028017780233 1246.5910506228465 2 624.3034057617188 MULTI HCD FTMS 0 0 0 23377 19414.080078125 0.3870474945784196 3 -0.068328857421875 7 Unmodified _SNISVYTFVSM_ REV__ENSG00000138650|ENST00000264360|PCDH10;REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 8.97624648632007 0.3788720818291249 2 {M(Oxidation (M))|F}V{[MS]|[{M(Oxidation (M))|F}A]} 4 -1 31.198 0 0 2.5027 0 0 764.3749994527278 0 764.3749994527278 0 19.20818753952375 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}V{[MS]|[{M(Oxidation (M))|F}A]} 2.5027 + + 13 + NaN NaN 102997.5 NaN 18952 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23385 93.422 NaN 45291 35 0 7790.5 0.261 + 34929 YSLFHPLLF 9 29 568.8105290678333 1135.6065052024665 2 568.8115844726562 MULTI HCD FTMS 0 0 0 23377 14313.4482421875 0.055460629496985436 25 -0.557464599609375 8 Unmodified _YSLFHPLLF_ ENST00000458570.5_1_X:101149758-101187002:-|nuORF;ENST00000488347.5_1_X:101149758-101186981:-|nuORF 3.944395688203298 0.32111559684428237 2 {I|L}{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8465 0 0 857.4473992012921 0 857.4473992012921 0 13.979400086720375 0 0 0 0 0 0 0 + {I|L}{M(Oxidation (M))|F} 1.8465 + + 3 NaN NaN 96783.7 NaN 18953 4430 23377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23387 93.427 NaN 213720 35 0 35171 0.327 -1 MLQQCFCII 9 49 578.2722192644943 NaN 0 578.2908325195312 PEAK HCD FTMS 0 0 0 23386 12271.2724609375 1 0 0 1 Carbamidomethyl (C) _MLQQC(Carbamidomethyl (C))FCII_ ENSG00000120159|ENST00000333916|CAAP1;ENST00000483493.6_1_9:26884817-26892259:-|nuORF;ENST00000517946.1_1_9:26869929-26887469:-|nuORF;nc|ENSG00000120159|Q9H8G2-2|CAAP1 4.3292370932331545 0.2742679634796037 2 E{M(Oxidation (M))|F}{I|L}N{I|L} 5 -1 20.433 0 0 1.7698 0 0 131.06183766810665 404.1492137860708 535.2110514541774 0 0 0 0 0 0 0 0 0 E{M(Oxidation (M))|F}{I|L}N{I|L} 1.7698 - 29 + NaN NaN 121498 NaN 18954 4431 23386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23388 93.431 NaN 120180 35 0 14607 0.261 -1 FPEVMIPVF 9 50 547.7848527457604 1093.5551525583207 2 547.7841186523438 MULTI HCD FTMS 0 0 0 23386 30704.75 1 0 0 2 Oxidation (M) _FPEVM(Oxidation (M))IPVF_ ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A;UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.8732 0 0 928.4764610073427 0 928.4764610073427 0 0.7918124604762511 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.8732 + + 37 + NaN NaN 117292 NaN 18955 4431 23386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23390 93.436 NaN 3707600 35 0 1044900 0.327 + 6122 FPEGLFYEF 9 72 574.7685982649667 1147.5226435967334 2 574.7689819335938 MULTI HCD FTMS 0 0 0 23389 2463737 0.753887513575593 -5 0.12786865234375 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 120.45040980043947 0.0012363446172167195 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 87.923 0 0 7.662 7.662 93.294 0 0 0 13.252574989159953 11.505149978319906 11.505149978319906 13.252574989159953 0 2.6677353201839438 0 1.9361818737241734 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}EY{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}EY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.662;6.5071;5.361;4.2062 -;+;-;- + 568 NaN NaN 657037.1 NaN 18956 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23391 93.44 NaN 356300 35 0 70454 0.261 + 22067 QHFFNQNFL 9 59 597.7894070761101 1193.5642612190202 2 598.2872924804688 MULTI HCD FTMS 0 0 0 23389 173617.34375 0.17646856846933 -11 0.232452392578125 2 Unmodified _QHFFNQNFL_ chrX:109535977-109536937|142|21.89|0.39|5.8|+|ENST00000218004|NXT2,NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;nc|ENSG00000101888|Q9NPJ8-4|NXT2 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 6 14.265 0 0 1.1951 0 0 768.3332259180421 0 768.3332259180421 0 -1.2691846597185457 -1.2691846597185457 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.1951 - 42 + NaN NaN 149062 NaN 18957 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23392 93.444 NaN 456430 35 0 76187 0.261 + 6618 FPLSELVEF 9 64 540.784344611017 1079.554136288834 2 540.784423828125 MULTI HCD FTMS 0 0 0 23389 97673.8046875 0.3204455443006828 -4 0.09825897216796875 3 Unmodified _FPLSELVEF_ ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-2|NOP2;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-4|NOP2 49.93300154707207 0.03166451819912738 2 SE{I|L}VE{M(Oxidation (M))|F} 6 3 55.099 0 0 5.1038 0 0 357.205858299025 0 357.205858299025 0 23.494850021680094 0 0 0 2.110924374808178 0 0 0 + SE{I|L}VE{M(Oxidation (M))|F} 5.1038 + + 296 NaN NaN 165130.6 NaN 18958 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23393 93.447 NaN 429980 35 0 35609 0.261 + 33784 YLGILFDIF 9 76 550.8039797123153 1099.5934064914304 2 550.79248046875 MULTI HCD FTMS 0 0 0 23389 21859.47265625 0.725195815602552 4 -0.1013031005859375 4 Unmodified _YLGILFDIF_ REV__tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1 18.13498045792455 0.20367413111508956 2 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L} 9 -1 + 36.621 0 0 3.3304 3.3304 81.733 0 0 0 3.2783248807594845 6.254019516304233 3.2783248807594845 3.2783248807594845 0 0.6989700043360187 1.5228787452803376 0 0 [Y{I|L}]T[{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L};[YT]{I|L}[{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F}{I|L};[YT][YK]VQ[VS]{I|L};[Y{I|L}]T[TA][KG]S{M(Oxidation (M))|F}{I|L};[YT]{I|L}[TA][KG]S{M(Oxidation (M))|F}{I|L} 3.3304;3.0323;2.9413;1.8573;1.5592 -;-;-;-;- 662 NaN NaN 156505.6 NaN 18959 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23394 93.45 NaN 322900 35 0 19601 0.261 + 5096 FEFEPFLQ 8 66 528.7556106842984 1055.4966684353967 2 528.755615234375 MULTI HCD FTMS 0 0 0 23389 100242.7421875 0.039183659167583054 19 -0.4699859619140625 5 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 43.85829265575387 0.18136530125488975 2 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L} 8 -1 + 38.963 0 0 3.6914 3.6914 85.988 0 0 0 4.115932723112593 4.115932723112593 4.115932723112593 9.262137858390812 0 1.610924374808178 0 0 0 [{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}AAV;[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[VS]WE{I|L} 3.6914;2.8139;2.3618;0.46468 -;-;-;- 287 NaN NaN 144517.8 NaN 18960 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23395 93.454 NaN 363590 35 0 55921 0.261 + 7810 FYPTLLYTL 9 79 565.8102931516922 1129.6060333701844 2 565.81103515625 MULTI HCD FTMS 0 0 0 23389 32479.22265625 0.16372315339386406 -4 0.09825897216796875 6 Unmodified _FYPTLLYTL_ ENSG00000110536|ENST00000326674|PTPMT1;nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1 25.399314129420986 0.14091189997036632 2 T[KQ]{I|L}YT{I|L} 7 5 30.767 0 0 2.7237 0 0 264.1109791486344 0 264.1109791486344 0 8.064338470346897 0 0 0 1.1549471895720984 0 0.3054621874040891 0 T[KQ]{I|L}YT{I|L} 2.7237 - 405 NaN NaN 155727.3 NaN 18961 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23396 93.457 NaN 136050 35 0 16712 0.261 + 28727 TSSSQELPVF 10 47 547.7724054054154 NaN 0 547.78369140625 PEAK HCD FTMS 0 0 0 23389 7968.3134765625 0.8061915942215423 -1 0.009613037109375 7 Unmodified _TSSSQELPVF_ ENST00000532769.1_1_11:13716334-13716379:+|nuORF 6.723162845929126 0.3344301934401713 2 {I|L} 1 9 4.6041 0 0 0.42103 0 0 165.05928811229938 812.3806856744749 977.4399737867743 0 0 0 0 0 0 0 0 0 + {I|L} 0.42103 + + 11 + NaN NaN 116777 NaN 18962 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23397 93.46 NaN 101330 35 0 8746.4 0.261 + 28947 TWYPVSIPAF 10 47 590.8054365670644 1179.5963202009286 2 590.762451171875 MULTI HCD FTMS 0 0 0 23389 15553.791015625 0.010295091656521633 56 -1.2563018798828125 8 Unmodified _TWYPVSIPAF_ ENSG00000165733|ENST00000374518|BMS1 18.1463463914782 0.3413772152514074 2 {I|L}S 2 9 21.37 0 0 1.8116 0 0 333.1700775633656 643.2888277643186 976.4589053276843 0 0 0 0 0 1.1549471895720984 0 0.4247425010840047 0 {I|L}S 1.8116 - 26 + NaN NaN 116679.9 NaN 18963 4432 23389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23399 93.465 NaN 158260 35 0 25124 0.327 + 30648 VPDPFFVEL 9 52 531.7795897272732 1061.5446265213463 2 531.7788696289062 MULTI HCD FTMS 0 0 0 23398 25805.236328125 0.01717309307957473 20 -0.4660797119140625 1 Unmodified _VPDPFFVEL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}VE{I|L} 4 5 43.928 0 0 4.1381 0 0 555.2684193341812 0 555.2684193341812 0 36.938200260161125 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}VE{I|L} 4.1381 + + 29 NaN NaN 112787.1 NaN 18964 4433 23398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23400 93.47 NaN 420320 35 0 63104 0.261 + 7811 FYPTLLYTL 9 75 565.8102931516922 1129.6060333701844 2 566.2974243164062 MULTI HCD FTMS 0 0 0 23398 46873.1328125 0.3743155056392877 -3 0.068328857421875 2 Unmodified _FYPTLLYTL_ ENSG00000110536|ENST00000326674|PTPMT1;nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1 19.256988751693697 0.19398022840297344 2 [YT]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y[{I|L}T] 9 3 + 37.461 0 0 3.3163 3.3163 89.063 0 0 0 5.8780057596104065 21.007404627624652 5.8780057596104065 37.461054822745496 0 1.113982988912431 1.3979400086720375 0 0 [YT]{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}Y[{I|L}T] 3.3163 - 956 NaN NaN 159181.7 NaN 18965 4433 23398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23401 93.473 NaN 58697 35 0 6404.1 0.262 + 20979 PLLDNSNH 8 44 455.22549421635205 NaN 0 455.2247314453125 PEAK HCD FTMS 0 0 0 23398 29924.919921875 0.6843631429511471 56 -1.2532501220703125 3 Unmodified _PLLDNSNH_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 2.8892196856762586 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.76942 0 0 369.25456401688535 389.1331881158813 758.3877521327666 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.76942 - 4 + NaN NaN 98587.8 NaN 18966 4433 23398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23402 93.477 NaN 59012 35 0 6640 0.261 + 5449 FIHWISEYPG 10 41 624.8049926757812 NaN 0 624.8049926757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FIHWISEYPG_ ENST00000471706.1_1_1:145457217-145470350:-|nuORF 1.6526216038709556 0.33876987398426067 2 {M(Oxidation (M))|F}V 2 9 10.969 0 0 0.88069 0 0 763.2920634748062 233.05538355045158 996.3474470252578 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 0.88069 - 12 + NaN NaN 101768 NaN 18967 4433 23398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23403 93.48 NaN 74051 35 0 6858.9 0.261 + 33540 YIITEYCFY 9 42 607.7747977400537 NaN 0 607.299072265625 PEAK HCD FTMS 0 0 0 23398 8927.83984375 0.4390839037066082 -1 0.0292205810546875 5 Unmodified _YIITEYCFY_ ENSG00000134853|ENST00000257290|PDGFRA;ENST00000507536.1_1_4:55143544-55147845:+|nuORF;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA 12.531546534597751 0.23452071659215576 2 {I|L} 1 8 15.044 0 0 1.2397 0 0 824.3040072459293 273.12449060611567 1097.428497852045 0 0 0 0 0 0.805462187404089 0 0 0 + {I|L} 1.2397 + + 8 + NaN NaN 98034.4 NaN 18968 4433 23398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23405 93.485 NaN 468250 35 0 62598 0.327 + 5792 FPATPLLDYAL 11 64 610.8320231005227 1219.6494932678454 2 610.8327026367188 MULTI HCD FTMS 0 0 0 23404 159342.1875 0.7498083734814632 3 -0.06877899169921875 1 Unmodified _FPATPLLDYAL_ ENSG00000131473|ENST00000352035|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF;nc|ENSG00000131473|P53396-2|ACLY;nc|ENSG00000131473|P53396-3|ACLY 47.594388314883695 0.09129669622414652 2 P{I|L}{I|L}DYA{I|L} 7 4 58.963 0 0 4.8345 0 0 416.20512587715 0 416.20512587715 0 53.874722956624694 0 0 0 2.024227503252014 0 0.3807196863200844 0 + P{I|L}{I|L}DYA{I|L} 4.8345 + + 120 NaN NaN 156387.5 NaN 18969 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23406 93.489 NaN 339150 35 0 88311 0.261 -1 YYNGGCVHEC 10 52 601.2240900903836 1200.433627247567 2 601.2244873046875 MULTI HCD FTMS 0 0 0 23404 105663.8203125 0.46855972620667313 -3 0.05841827392578125 2 Carbamidomethyl (C) _YYNGGC(Carbamidomethyl (C))VHEC_ ENSG00000159307|ENST00000360835|SCUBE1 1.4819007175156935 0.4674597685733628 2 W 1 -1 5.4846 0 0 0.45688 0 0 130.9652930748337 880.3664863907691 1011.3317794656027 0 0 0 0 0 0 0 0 0 W 0.45688 - 6 + NaN NaN 143951.7 NaN 18970 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23407 93.493 NaN 297400 35 0 21584 0.261 + 26156 SPMDIFDMF 9 63 559.7301289045481 1117.4457048758961 2 559.7305297851562 MULTI HCD FTMS 0 0 0 23404 64642.9453125 0.26390306857157403 6 -0.14067840576171875 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 61.357469665136826 0.01568246967499496 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[SG]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 8 6 56.31 0 0 5.0392 0 0 165.08752307803405 0 165.08752307803405 0 43.12235206668652 0 0 0 1.274227503252014 0 0.8441876774005249 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[SG]{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.0392 - 330 + NaN NaN 138027.3 NaN 18971 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23408 93.496 NaN 170640 35 0 25286 0.261 -1 0 70 533.3405002540355 1064.666447574871 2 533.3406982421875 MULTI HCD FTMS 0 0 0 23404 83006.6953125 0.29519195431206097 -2 0.04880523681640625 4 NaN NaN 2 V 1 -1 3.9794 0 0 0.37377 0 0 132.2054347302605 830.3694171332036 962.5748518634641 0 0 0 0 0 0 0 0 0 V 0.37377 - 15 + NaN NaN 123756.4 NaN 18972 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23409 93.5 NaN 101450 35 0 17089 0.261 + 25551 SFLYCCDF 8 44 499.1932056664753 996.3718583997506 2 499.193359375 MULTI HCD FTMS 0 0 0 23404 40123.3828125 0.39085429535057187 -2 0.04880523681640625 5 Unmodified _SFLYCCDF_ ENSG00000123600|ENST00000375258|METTL8;ENST00000428182.2_1_12:15408356-15408710:-|nuORF;ENST00000438609.5_1_2:172180771-172195744:-|nuORF;nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 13.495 0 0 1.3544 0 0 831.2930752960382 0 831.2930752960382 0 6.505149978319906 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.3544 + + 5 + NaN NaN 95270.4 NaN 18973 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23410 93.503 NaN 98795 35 0 5858.3 0.261 -1 0 54 451.93261201226846 1352.7760066370054 3 451.9327392578125 MULTI HCD FTMS 0 0 0 23404 68747.2578125 0.11246735249267246 -26 0.5783004760742188 6 NaN NaN 2 R 1 -1 6.9897 0 0 0.51669 0 0 468.4170111309491 725.2392611644068 1193.6562722953558 0 0 0 0 0 0 0 0 0 R 0.51669 - 2 + NaN NaN 104958.1 NaN 18974 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23411 93.506 NaN 79267 35 0 7482 0.261 + -1 PIPYLCLF 8 52 511.77122810749944 NaN 0 511.771240234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _PIPYLC(Carbamidomethyl (C))LF_ REV__ENST00000395474.7_2_3:49053065-49053377:+|nuORF 11.114462752807354 0.38822285293237185 2 {I|L} 1 -1 15.485 0 0 1.5158 0 0 165.08024325675666 740.3416842096311 905.4219274663878 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.5158 + + 6 + NaN NaN 101559.7 NaN 18975 4434 23404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23413 93.511 NaN 1291000 35 0 372400 0.327 + 6744 FPQIGELIL 9 44 515.3027135996462 1028.5908742660922 2 515.3029174804688 MULTI HCD FTMS 0 0 0 23412 1074113.125 0.5668193989075364 -2 0.0458526611328125 1 Unmodified _FPQIGELIL_ ENSG00000163510|ENST00000410053|CWC22 60.07390631473393 0.0174780869009295 2 {I|L}GE{I|L}{I|L}{I|L} 6 3 66.389 0 0 6.4543 0 0 372.1787416854306 0 372.1787416854306 0 45.30130979747199 0 0 0 2.3494850021680094 0 0.3252574989159953 0 + {I|L}GE{I|L}{I|L}{I|L} 6.4543 + + 89 NaN NaN 300499.3 NaN 18976 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23414 93.516 NaN 588720 35 0 102240 0.261 + -1 FPCCFLTWP 9 69 585.7594676403127 1169.5043823474252 2 585.7599487304688 MULTI HCD FTMS 0 0 0 23412 444019.65625 0.8641056911137707 -1 0.02626800537109375 2 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 23.1484247019978 0.1603590852062899 2 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 70.438 0 0 6.0229 0 0 316.10298354316564 0 316.10298354316564 0 34.4634978558971 0 0 0 1.8494850021680094 0 0.7742275032520141 0 Y{M(Oxidation (M))|F}{I|L}GEPE 6.0229 - 234 NaN NaN 188517.9 NaN 18977 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23415 93.519 NaN 688360 35 0 82756 0.261 + 11129 IYILDPELL 9 59 544.8155699883175 1087.616587043435 2 544.815673828125 MULTI HCD FTMS 0 0 0 23412 371149.8125 0.9176570650582008 -2 0.0458526611328125 3 Unmodified _IYILDPELL_ ENSG00000149091|ENST00000456247|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ 46.020951573049366 0.037705236580089195 2 [Y{I|L}]{I|L}{I|L}D[EP]{I|L}{I|L} 9 0 + 52.074 0 0 4.7879 4.7879 85.654 0 0 0 4.762036441594191 38.974856131339166 4.762036441594191 9.018637558036673 0 2.274227503252014 0 0 0 + + [Y{I|L}]{I|L}{I|L}D[EP]{I|L}{I|L};[Y{I|L}]{I|L}D{I|L}[EP]{I|L}{I|L} 4.7879;3.9587 +;- + 149 NaN NaN 199087.6 NaN 18978 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23416 93.523 NaN 262650 35 0 14838 0.263 -1 0 67 437.25721486719715 1308.7498152017915 3 437.2573547363281 MULTI HCD FTMS 0 0 0 23412 160863.15625 0.36119446007030337 32 -0.6676177978515625 4 NaN NaN 2 K 1 -1 6.5714 0 0 0.50211 0 0 894.5039973502097 283.1176851861938 1177.6216825364036 0 0 0 0 0 0.3807196863200844 0 0 0 K 0.50211 - 11 + NaN NaN 137133.5 NaN 18979 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23417 93.526 NaN 529770 35 0 68101 0.261 + 5959 FPDPVVQWL 9 69 550.7923175605561 1099.570082187912 2 551.2843627929688 MULTI HCD FTMS 0 0 0 23412 48583.8515625 0.6471164723343489 4 -0.10157012939453125 5 Unmodified _FPDPVVQWL_ ENSG00000144120|ENST00000272521|TMEM177 21.536976647645854 0.1742816388551942 2 [YT][YK]VQW{I|L} 8 5 + 50.851 0 0 4.6247 4.6247 87.127 0 0 0 15.686362358410122 15.780250641098817 15.686362358410122 9.262137858390815 0 0.9247425010840047 1.5228787452803376 0 0 [YT][YK]VQW{I|L};[YT][YK]V[AG]W{I|L};{[DS]|[MA]|[CV]|TT}[KP]QVQ{[DA]|[EG]}{I|L} 4.6247;3.7823;1.5872 -;-;- 848 NaN NaN 180884.3 NaN 18980 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23418 93.529 NaN 344660 35 0 72060 0.261 -1 FESYYFPMS 9 57 593.7421763162799 1185.4697996993598 2 593.7421875 MULTI HCD FTMS 0 0 0 23412 122664.265625 0.8073255740532438 -1 0.02626800537109375 6 Oxidation (M) _FESYYFPM(Oxidation (M))S_ CON__Q2TBQ1 7.289230182591677 0.29575926068275815 2 PEE 3 -1 33.698 0 0 2.8426 0 0 812.3071156232437 0 812.3071156232437 0 12.728787452803374 0 0 0 0.3252574989159953 0 0.4247425010840047 0 PEE 2.8426 - 47 NaN NaN 147301.7 NaN 18981 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23419 93.533 NaN 50740 35 0 5196.8 0.261 + 22327 QPIVSRARPEL 11 30 633.3694429355902 1264.7243329379803 2 633.369140625 MULTI HCD FTMS 0 0 0 23412 43033.4140625 0.8602552915026341 5 -0.114410400390625 7 Unmodified _QPIVSRARPEL_ ENSG00000196218|ENST00000359596|RYR1;nc|ENSG00000196218|P21817-2|RYR1;nc|ENSG00000196218|P21817-3|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant 0.5059551277355931 0.4167017191902429 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107318.5 NaN 18982 4435 23412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23421 93.537 NaN 582710 35 0 60013 0.327 + 3436 EFLPFHFLL 9 71 581.8180298058247 1161.6215066784494 2 581.818359375 MULTI HCD FTMS 0 0 0 23420 276090.15625 0.5071704560379959 4 -0.0881805419921875 1 Unmodified _EFLPFHFLL_ ENSG00000227057|ENST00000374617|WDR46 56.541270873467816 0.02242000196051205 2 [{M(Oxidation (M))|F}E]{I|L} 3 6 27.007 0 0 2.3249 0 0 0 769.4043550579836 769.4043550579836 9.540426854588802 0 0 0 0 1 0 0.805462187404089 0 + [{M(Oxidation (M))|F}E]{I|L} 2.3249 + + 220 NaN NaN 183404.9 NaN 18983 4436 23420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23422 93.542 NaN 297730 35 0 50982 0.261 -1 YLCVKAMIL 9 65 555.8061911045005 1109.597829275801 2 556.7937622070312 MULTI HCD FTMS 0 0 0 23420 5151.033203125 0.49134332006418524 1 -0.0162811279296875 2 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))VKAMIL_ ENSG00000140009|ENST00000341099|ESR2;ENST00000555483.5_1_14:64699857-64724116:-|nuORF;nc|ENSG00000140009|Q92731-2|ESR2;nc|ENSG00000140009|Q92731-4|ESR2;nc|ENSG00000140009|Q92731-5|ESR2;nc|ENSG00000140009|Q92731-6|ESR2;nc|ENSG00000140009|Q92731-9|ESR2 13.50788311687929 0.24365122550260465 2 [Y{I|L}]VAYYEP 8 -1 38.638 0 0 3.4822 0 0 0 108.10374212289244 108.10374212289244 21.938652556024678 0 0 0 0 0.3807196863200844 1.5228787452803376 0.9247425010840047 0 [Y{I|L}]VAYYEP 3.4822 - 520 NaN NaN 141347.3 NaN 18984 4436 23420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23423 93.545 NaN 31169 35 0 6094.1 0.261 + 22209 QLQQLREVLR 10 25 641.8825780006046 1281.750603068009 2 642.3843994140625 MULTI HCD FTMS 0 0 0 23420 14475.966796875 0.5207607438725537 1 -0.0162811279296875 3 Unmodified _QLQQLREVLR_ CROCC|p.L1854Rfs*2|1|0.12|ENSG00000058453|chr1:16970362-16970375|TGGCTCAGCTGGAA/-|frameshift_variant;ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;nc|ENSG00000058453|Q5TZA2-2|CROCC 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98727.8 NaN 18985 4436 23420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23424 93.549 NaN 110460 35 0 11475 0.261 + -1 YLGLGWRCR 9 49 590.8054365670644 1179.5963202009286 2 590.805419921875 MULTI HCD FTMS 0 0 0 23420 14997.6455078125 0.00992697760821401 60 -1.3424530029296875 4 Carbamidomethyl (C) _YLGLGWRC(Carbamidomethyl (C))R_ REV__ENST00000394072.7_1_17:38633842-38637100:-|nuORF 8.593279151180031 0.2858735984551981 2 WR{M(Oxidation (M))|F} 3 -1 19.693 0 0 1.6694 0 0 147.10952722859753 540.2469576471311 687.3564848757287 0 0 0 0 0 0.5 0 0 0 WR{M(Oxidation (M))|F} 1.6694 - 18 + NaN NaN 113417.1 NaN 18986 4436 23420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23426 93.554 NaN 794870 35 0 51147 0.327 -1 0 98 524.8273647912825 1047.640176649365 2 524.8274536132812 MULTI HCD FTMS 0 0 0 23425 719597.5 0.7976665732994846 1 -0.03285980224609375 1 NaN NaN 2 W 1 -1 10.379 0 0 0.99066 0 0 843.5506818757307 0 843.5506818757307 0 0.5322347674085748 0 0 0 0 0 0 0 W 0.99066 - 69 + NaN NaN 207801.9 NaN 18987 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23427 93.558 NaN 1227700 35 0 180650 0.261 + 15648 LPEFVEPFL 9 63 545.7947024674303 1089.5748520016605 2 545.7948608398438 MULTI HCD FTMS 0 0 0 23425 674875.3125 0.569307186479704 -3 0.06877899169921875 2 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 61.357469665136826 0.01568246967499496 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 79.975 0 0 7.34 7.34 94.758 0 0 0 17.60451712829392 59.0054422723817 17.60451712829392 32.99803764475705 0 1.8252574989159953 1.6989700043360187 1.0629529932484498 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QG]|[NA]}R{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}N;[{M(Oxidation (M))|F}V][EP]{I|L}EP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QG]|[NA]}R{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}N;[Y{I|L}][YK]E[YV]{I|L};[Y{I|L}][YK][Y{I|L}]D{I|L} 7.34;4.3115;3.8093;3.7144;3.5301;3.2123;0.52119;0.35957 -;-;-;-;-;-;-;- 507 NaN NaN 270167.3 NaN 18988 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23428 93.562 NaN 928580 35 0 71877 0.261 + 11185 IYIWDLNNF 9 80 599.3004998777495 1196.586446822299 2 599.301513671875 MULTI HCD FTMS 0 0 0 23425 427388.40625 0.07740582503689962 -6 0.127197265625 3 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 158.20266083822983 1.5497770410472245E-07 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 104.48 0 0 8.7313 8.7313 93.05 0 0 0 52.18642789064525 12.191964632593582 12.191964632593582 9.208187539523749 0 3.1989700043360187 1.5228787452803376 0.3252574989159953 2.115356566548286 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}DW{I|L}K{M(Oxidation (M))|F};[Y{I|L}]W[EP]{[QS]|[NT]}K{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[QT]W{I|L}Q{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}GG{I|L}DW{I|L}K{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[DN]DW{I|L}K{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[QT]WQ{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[WK]{I|L}[DN]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[WK][DV]Q{M(Oxidation (M))|F} 8.7313;7.9618;2.9558;2.392;1.697;1.6731;1.6506;1.4454;1.0958;0.99135 +;-;-;-;-;-;-;-;-;- + 1354 + NaN NaN 225246.3 NaN 18989 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23429 93.565 NaN 137970 35 0 20226 0.262 + 22345 QPLIIAVVL 9 36 483.3233065658162 964.6320601984324 2 483.323486328125 MULTI HCD FTMS 0 0 0 23425 125796 1 0 0 4 Unmodified _QPLIIAVVL_ ENSG00000181856|ENST00000317370|SLC2A4;nc|ENSG00000181856|P14672-2|SLC2A4 16.942295170755138 0.21397866736869717 2 R{[VA]|[{I|L}G]}V{I|L} 5 5 30.942 0 0 3.2077 0 0 408.25715834785314 0 408.25715834785314 0 30.94212497064703 0 0 0 1 0 0 0.5 R{[VA]|[{I|L}G]}V{I|L} 3.2077 - 15 NaN NaN 109041.1 NaN 18990 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23430 93.568 NaN 56164 35 0 4940.4 0.261 + 28057 TGLQGFLVF 9 39 491.2736906045336 980.5328282758672 2 491.27398681640625 MULTI HCD FTMS 0 0 0 23425 6751.1328125 0.08601264034305323 7 -0.19330596923828125 5 Unmodified _TGLQGFLVF_ ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F} 1 8 20.485 0 0 2.0891 0 0 815.4540299133657 0 815.4540299133657 0 12.847725134586268 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.0891 + + 6 + NaN NaN 97299.8 NaN 18991 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23431 93.572 NaN 69852 35 0 14892 0.261 + 16869 LYFAHVGF 8 34 477.24588221043297 NaN 0 477.7292175292969 PEAK HCD FTMS 0 0 0 23425 12145.6484375 1 0 0 6 Unmodified _LYFAHVGF_ REV__ACTRT2|p.P134H|1|0.08|ENSG00000169717|chr1:3022087-3022087|C/A|missense_variant 0.7936320650641473 0.38822285293237185 2 S 1 -1 6.9897 0 0 0.73384 0 0 407.31773990739094 455.09846036915656 862.4162002765474 0 0 0 0 0 0 0 0 0 S 0.73384 - 2 + NaN NaN 95364.5 NaN 18992 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23432 93.575 NaN 101340 35 0 32359 0.261 + 17723 MCCLLLWVFF 10 46 637.8134535783156 NaN 0 637.8132934570312 PEAK HCD FTMS 0 0 0 23425 17192.310546875 0.7875816484696739 1 -0.03285980224609375 7 Unmodified _MCCLLLWVFF_ ENST00000252593.6_1_19:17513793-17513853:-|nuORF 4.3292370932331545 0.3364790620948225 2 {M(Oxidation (M))|F}A 2 9 11.454 0 0 0.8993 0 0 165.08316603569034 887.4073580377561 1052.4905240734465 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}A 0.8993 - 4 + NaN NaN 99474.6 NaN 18993 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23433 93.578 NaN 177370 35 0 15857 0.261 + 10986 IYEESAKNEE 10 65 606.2767007279514 NaN 0 606.2896728515625 PEAK HCD FTMS 0 0 0 23425 17753.708984375 1 0 0 8 Unmodified _IYEESAKNEE_ REV__ENSG00000163961|ENST00000318037|RNF168 8.745405648335112 0.33269943387702366 2 DN{I|L}D[VP]N 7 -1 21.203 0 0 1.7515 0 0 164.06984216492089 276.0990389459594 440.1688811108803 0 0 0 0 0 0 0 0 0.4247425010840047 DN{I|L}D[VP]N 1.7515 - 286 + NaN NaN 121932.1 NaN 18994 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23434 93.582 NaN 39224 35 0 4842.1 0.261 + -1 AALMYSESIVC 11 25 622.286112444131 1242.557671955062 2 623.3189697265625 MULTI HCD FTMS 0 0 0 23425 16633.70703125 0.28280775406798203 -6 0.127197265625 9 Carbamidomethyl (C) _AALMYSESIVC(Carbamidomethyl (C))_ REV__OR8D4|p.C112S|1|0.07|ENSG00000181518|chr11:123906765-123906765|T/A|missense_variant 3.5964929083625545 0.40314767035630406 2 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 10.458 0 0 0.84162 0 0 852.3694833337714 0 852.3694833337714 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.84162 + + 8 + NaN NaN 91702.9 NaN 18995 4437 23425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23436 93.587 NaN 2705400 35 0 753710 0.327 + 6123 FPEGLFYEF 9 64 574.7685982649667 1147.5226435967334 2 574.76904296875 MULTI HCD FTMS 0 0 0 23435 1917907.5 0.5868672331677373 1 -0.0261993408203125 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 107.99703571036002 0.003269392969029945 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 94.773 0 0 8.2589 8.2589 95.848 0 0 0 22.26203644159419 65.56479076621045 22.26203644159419 26.404243831634986 0 2.4247425010840047 0 1.892159058960253 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}EY{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.2589;5.9579 -;- 230 NaN NaN 508477.8 NaN 18996 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23437 93.591 NaN 493300 35 0 87984 0.261 + 17234 LYNWEVAIF 9 76 577.7979390933117 1153.5813252534233 2 577.7974853515625 MULTI HCD FTMS 0 0 0 23435 195876.453125 0.4789799804206541 -2 0.04914093017578125 2 Unmodified _LYNWEVAIF_ ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF 49.93300154707207 0.03166451819912738 2 [YN]{I|L}[WE]VA{I|L}{M(Oxidation (M))|F} 9 2 + 58.768 0 0 5.0944 5.0944 91.024 0 0 0 3.0671764799854486 50.686114161768344 3.0671764799854486 33.99141420196136 0 1.9247425010840047 0 0 1.0189301784845295 [YN]{I|L}[WE]VA{I|L}{M(Oxidation (M))|F};[{I|L}A][WR]V{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0944;2.1478 -;- 133 NaN NaN 166923 NaN 18997 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23438 93.595 NaN 392110 35 0 75120 0.261 + 6619 FPLSELVEF 9 55 540.784344611017 1079.554136288834 2 540.78466796875 MULTI HCD FTMS 0 0 0 23435 123137.890625 0.4039874202874777 2 -0.03903961181640625 3 Unmodified _FPLSELVEF_ ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-2|NOP2;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-4|NOP2 43.85829265575387 0.04763305254408404 2 {I|L}VE{M(Oxidation (M))|F} 4 5 50.433 0 0 4.6717 0 0 573.2795524038714 0 573.2795524038714 0 33.979400086720375 0 0 0 2 0 0.5 0 + {I|L}VE{M(Oxidation (M))|F} 4.6717 + + 163 + NaN NaN 146877.5 NaN 18998 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23439 93.598 NaN 322800 35 0 33476 0.261 + 8875 HNLQYLYLE 9 72 596.8020288357711 NaN 0 596.7837524414062 PEAK HCD FTMS 0 0 0 23435 18971.103515625 0.5957262800699573 1 -0.0261993408203125 4 Unmodified _HNLQYLYLE_ ENSG00000179542|ENST00000356928|SLITRK4 11.640296217721598 0.23883959125015683 2 V{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 4 9 23.32 0 0 1.9571 0 0 165.08224863242168 515.2514105419766 680.3336591743982 0 0 0 0 0 0 0 0.28872548999643577 0 V{M(Oxidation (M))|F}{M(Oxidation (M))|F}D 1.9571 - 263 + NaN NaN 149394.6 NaN 18999 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23440 93.601 NaN 214970 35 0 29985 0.261 + 33205 YFDLLGELM 9 46 558.7673762661158 1115.5201995990315 2 558.7672729492188 MULTI HCD FTMS 0 0 0 23435 75938.8125 0.6896658690473445 1 -0.0261993408203125 5 Oxidation (M) _YFDLLGELM(Oxidation (M))_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 47.748688679222035 0.03472022231463587 2 {I|L}{I|L}GE{I|L}{M(Oxidation (M))|F} 6 3 53.621 0 0 4.8068 0 0 425.1588612287125 0 425.1588612287125 0 32.65153777800478 0 0 0 2.1505149978319906 0 0 0 + {I|L}{I|L}GE{I|L}{M(Oxidation (M))|F} 4.8068 + + 225 NaN NaN 115873.5 NaN 19000 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23441 93.605 NaN 118500 35 0 20861 0.261 -1 SYMVYFNFF 9 41 617.2677555786128 1232.5209582240254 2 617.769287109375 MULTI HCD FTMS 0 0 0 23435 7338.87841796875 0.30489966726835066 -1 0.03285980224609375 6 Oxidation (M) _SYM(Oxidation (M))VYFNFF_ ENSG00000170425|ENST00000304222|ADORA2B;ENST00000582124.1_1_17:15877924-15878653:+|nuORF 17.11289562659939 0.2125047172822487 2 Y{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 5 -1 27.135 0 0 2.2016 0 0 496.198534080275 0 496.198534080275 0 20.145228064085998 0 0 0 1.142159058960253 0 0 0 Y{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 2.2016 + + 18 NaN NaN 104934.2 NaN 19001 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23442 93.608 NaN 75772 35 0 6852.3 0.262 + 10731 IQYKLSFL 8 43 506.2971496582031 NaN 0 506.2971496582031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _IQYKLSFL_ REV__ENSG00000163755|ENST00000296051|HPS3;REV__ENST00000486530.1_1_3:148847510-148871436:+|nuORF;REV__nc|ENSG00000163755|Q969F9-2|HPS3 4.75600775471527 0.38822285293237185 2 S 1 -1 3.4949 0 0 0.34583 0 0 645.3858737287126 275.1389254205688 920.5247991492813 0 0 0 0 0 0 0 0 0 S 0.34583 + + 1 + NaN NaN 96353.8 NaN 19002 4438 23435 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23444 93.613 NaN 481040 35 0 98384 0.327 + 7812 FYPTLLYTL 9 71 565.8102931516922 1129.6060333701844 2 565.8102416992188 MULTI HCD FTMS 0 0 0 23443 107665.3828125 0.5427259196435231 3 -0.06861114501953125 1 Unmodified _FYPTLLYTL_ ENSG00000110536|ENST00000326674|PTPMT1;nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1 32.30548876998284 0.10066689432505688 2 [YT]T[KQ]{I|L}Y 7 6 40.264 0 0 3.5645 0 0 0 229.1188686886541 229.1188686886541 19.29515381062835 0 0 0 0 1.2059771852360797 1.6989700043360187 0 0 [YT]T[KQ]{I|L}Y 3.5645 - 421 NaN NaN 178482.5 NaN 19003 4439 23443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23445 93.617 NaN 728700 35 0 100270 0.261 + 1012 AYFPELIANF 10 81 592.8031829807909 1183.5918130283817 2 592.8027954101562 MULTI HCD FTMS 0 0 0 23443 203004.296875 0.10539049108463339 -7 0.17664337158203125 2 Unmodified _AYFPELIANF_ ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46 90.13494162714682 0.000992056157953851 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F} 10 0 + 81.169 0 0 6.8578 6.8578 89.34 0 0 0 13.459631730416334 64.97068322421148 13.459631730416334 9.164539485499262 0 2.9564608101803795 2 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PA[RK]AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{I|L}E{[ES]|[DT]|[{I|L}C]}M{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]KMP{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]KMPC{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]KM{[ES]|[DT]|[{I|L}C]}P{M(Oxidation (M))|F} 6.8578;6.0835;5.3978;5.2963;3.1022;3.0402;2.9513;1.9119 +;-;-;-;-;-;-;- + 2020 NaN NaN 204373.3 NaN 19004 4439 23443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23446 93.621 NaN 249520 35 0 18415 0.261 + 5097 FEFEPFLQ 8 73 528.7556106842984 1055.4966684353967 2 528.7554931640625 MULTI HCD FTMS 0 0 0 23443 66270.0390625 0.025904145945951758 26 -0.5113143920898438 3 Unmodified _FEFEPFLQ_ REV__ENSG00000063761|ENST00000238561|ADCK1;REV__nc|ENSG00000063761|Q86TW2-3|ADCK1;REV__nc|ENSG00000063761|Q86TW2|ADCK1 30.636539890814138 0.35121444018244025 2 {M(Oxidation (M))|F}Q{I|L} 3 -1 31.387 0 0 2.9737 0 0 649.2741566388687 0 649.2741566388687 0 6.707939342881968 0 0 0 0.6694451763165201 0 0 0 {M(Oxidation (M))|F}Q{I|L} 2.9737 - 191 NaN NaN 126163 NaN 19005 4439 23443 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23448 93.626 NaN 243020 35 0 15847 0.326 -1 0 75 451.93261201226846 1352.7760066370054 3 451.93255615234375 MULTI HCD FTMS 0 0 0 23447 152683.921875 0.2497838751374457 -20 0.461181640625 1 NaN NaN 2 E 1 -1 11.783 0 0 0.871 0 0 1205.7242621075115 0 1205.7242621075115 0 2.9184150343808 0 0 0 0 0 0 0 E 0.871 - 33 + NaN NaN 132015.5 NaN 19006 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23449 93.63 NaN 537990 35 0 76562 0.261 -1 0 82 610.2914591042522 1218.5683652753044 2 610.2915649414062 MULTI HCD FTMS 0 0 0 23447 251096.828125 0.4542360911052449 -3 0.0718994140625 2 NaN NaN 2 {I|L}Y{I|L}WD{I|L}N 7 -1 76.741 0 0 6.2976 0 0 0 298.0813082330688 298.0813082330688 47.72452007610906 0 0 0 0 2.079689690656103 1.6989700043360187 0 0.3494850021680094 {I|L}Y{I|L}WD{I|L}N 6.2976 - 839 + NaN NaN 177436 NaN 19007 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23450 93.634 NaN 478580 35 0 79805 0.261 + 15860 LPLDEFLEH 9 69 556.7843017099195 1111.554050486639 2 556.7841186523438 MULTI HCD FTMS 0 0 0 23447 119370.421875 1 0 0 3 Unmodified _LPLDEFLEH_ REV__ENSG00000175105|ENST00000636215|ZNF654 36.04419817259434 0.08350412372117409 2 {I|L}PE{M(Oxidation (M))|F}VE 6 -1 84.672 0 0 7.6174 0 0 0 394.1741713972782 394.1741713972782 54.226759565325295 0 0 0 0 1.9049471895720984 1.5228787452803376 0.9247425010840047 0 {I|L}PE{M(Oxidation (M))|F}VE 7.6174 - 559 + NaN NaN 161808.6 NaN 19008 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23451 93.637 NaN 112900 35 0 16541 0.261 -1 0 56 533.3405002540355 1064.666447574871 2 533.3406372070312 MULTI HCD FTMS 0 0 0 23447 141567.140625 0.503447110502796 4 -0.12140655517578125 4 NaN NaN 2 A 1 -1 2.2185 0 0 0.20837 0 0 298.21254240084596 692.4077242486936 990.6202666495396 0 0 0 0 0 0 0 0 0 A 0.20837 - 2 + NaN NaN 110790.4 NaN 19009 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23452 93.64 NaN 347090 35 0 61447 0.261 + 3539 EINPLLELI 9 56 527.313314577704 1052.6120762222079 2 527.314697265625 MULTI HCD FTMS 0 0 0 23447 97301.625 0.08847065054506172 -6 0.14067840576171875 5 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 29.84058131909904 0.11198220037953927 2 {[QN]|[E{I|L}]|[KN]}{I|L}PN{I|L}E{I|L}{I|L} 9 -1 + 59.831 0 0 5.684 5.684 88.035 0 0 0 4.137342758552691 57.841087759491856 4.137342758552691 9.208187539523749 0 1.4247425010840047 0 0 0 {[QN]|[E{I|L}]|[KN]}{I|L}PN{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}PGG{I|L}E{I|L}{I|L} 5.684;4.8092 -;- 126 NaN NaN 138474.8 NaN 19010 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23453 93.644 NaN 125800 35 0 10538 0.261 + -1 KQDVSMPCVL 10 55 588.7891970214503 1175.5638411097004 2 589.2929077148438 MULTI HCD FTMS 0 0 0 23447 28388.234375 0.7940170561971706 -2 0.03903961181640625 6 Carbamidomethyl (C) _KQDVSMPC(Carbamidomethyl (C))VL_ REV__ENSG00000120539|ENST00000375940|MASTL;REV__nc|ENSG00000120539|Q96GX5-2|MASTL;REV__nc|ENSG00000120539|Q96GX5-3|MASTL 19.361941925380144 0.3300069447713393 2 {I|L}YN[WE]V 6 -1 46.898 0 0 3.9894 0 0 0 368.15867029361567 368.15867029361567 21.681212380090216 0 0 0 0 1.1747425010840047 2 0 0 {I|L}YN[WE]V 3.9894 - 60 + NaN NaN 107736.6 NaN 19011 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23454 93.647 NaN 123120 35 0 11749 0.261 + -1 ERFRTCNNF 9 43 622.286112444131 1242.557671955062 2 622.7866821289062 MULTI HCD FTMS 0 0 0 23447 39710.796875 0.4518240761662711 -3 0.0718994140625 7 Carbamidomethyl (C) _ERFRTC(Carbamidomethyl (C))NNF_ REV__ENSG00000155592|ENST00000328086|ZKSCAN2;REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF 8.745405648335112 0.2847203663274469 2 [YN]{I|L}{[QS]|[NT]}M{I|L}ND 9 -1 48.338 0 0 3.8902 0 0 0 161.065490863571 161.065490863571 31.88424994129406 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}{[QS]|[NT]}M{I|L}ND 3.8902 - 194 NaN NaN 117744.5 NaN 19012 4440 23447 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23456 93.652 NaN 954900 35 0 121950 0.327 + 6745 FPQIGELIL 9 102 515.3027135996462 1028.5908742660922 2 516.3146362304688 MULTI HCD FTMS 0 0 0 23455 48713.8515625 0.2867005304033357 4 -0.11479949951171875 1 Unmodified _FPQIGELIL_ ENSG00000163510|ENST00000410053|CWC22 39.94969957227396 0.06557568441294001 2 W{I|L}{I|L}{I|L} 4 6 21.446 0 0 2.085 0 0 485.26167494941564 0 485.26167494941564 0 12.774334638038452 0 0 0 1.1549471895720984 0 0 0 W{I|L}{I|L}{I|L} 2.085 - 388 NaN NaN 245299.6 NaN 19013 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23457 93.656 NaN 556760 35 0 85402 0.261 + -1 FPCCFLTWP 9 82 585.7594676403127 1169.5043823474252 2 585.760009765625 MULTI HCD FTMS 0 0 0 23455 302811.125 0.5893000743591819 5 -0.1509552001953125 2 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 28.486842064014134 0.11819662193267319 2 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 63.294 0 0 5.4121 0 0 316.1030750959 0 316.1030750959 0 32.548954067622304 0 0 0 1.6307196863200843 0 0.8807196863200843 0 Y{M(Oxidation (M))|F}{I|L}GEPE 5.4121 - 664 NaN NaN 183320.1 NaN 19014 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23458 93.66 NaN 542720 35 0 80400 0.263 + 3593 EKIRNAKRVHF 11 64 466.6076203594671 1396.8010316786012 3 466.6080017089844 MULTI HCD FTMS 0 0 0 23455 137507.484375 0.524365085049175 -10 0.22525787353515625 3 Unmodified _EKIRNAKRVHF_ REV__ENSG00000072422|ENST00000337910|RHOBTB1;REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF 2.2527281973983926 0.4090409658946738 2 PE 2 -1 10.969 0 0 0.7853 0 0 585.3924145905138 582.2925509088499 1167.6849654993637 0 0 0 0 0 0 0 0 0 PE 0.7853 - 13 + NaN NaN 183036.1 NaN 19015 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23459 93.663 NaN 1073600 35 0 202030 0.261 + 10263 IIYPYEGNNF 10 88 615.2945253433584 1228.5744977535167 2 615.7960205078125 MULTI HCD FTMS 0 0 0 23455 205653.90625 0.716120612582277 -5 0.11434173583984375 4 Unmodified _IIYPYEGNNF_ REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1 39.212999716063884 0.15223626971197562 2 [YN][KT]DT{I|L}NN{M(Oxidation (M))|F} 10 -1 + 63.078 0 0 5.1342 5.1342 83.766 0 0 0 2.970113796176399 5.349658552497708 2.970113796176399 2.970113796176399 0 1.079689690656103 1.154901959985743 0.8609243748081783 0.9269359821608809 [YN][KT]DT{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]ETDWQK{M(Oxidation (M))|F};[YN][KT]DT{I|L}GGN{M(Oxidation (M))|F};[YN][KT]DT{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]ETDW[AG]K{M(Oxidation (M))|F};[RH]QWD{I|L}NN{M(Oxidation (M))|F};[YN][KT]D{[DA]|[EG]}QK{M(Oxidation (M))|F};[Y{I|L}]EE{[WT]|[RM]}KN{M(Oxidation (M))|F};[YN][KT]D{[CP]|[EA]}KN{M(Oxidation (M))|F};[RH]QWD{I|L}GGN{M(Oxidation (M))|F} 5.1342;4.8925;4.3883;4.3883;4.143;4.0273;3.6914;3.3703;3.3034;3.2778 -;-;-;-;-;-;-;-;-;- 4938 NaN NaN 254359.2 NaN 19016 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23460 93.666 NaN 701980 35 0 91581 0.261 -1 DFHCTCSANF 10 99 601.2240900903836 1200.433627247567 2 601.2241821289062 MULTI HCD FTMS 0 0 0 23455 123394.25 0.5471842284755813 4 -0.11479949951171875 5 Carbamidomethyl (C) _DFHC(Carbamidomethyl (C))TCSANF_ CRB2|p.P834S|1|0.29|ENSG00000148204|chr9:123372240-123372240|C/T|missense_variant 2.9952420565917617 0.4594494122822477 2 [Y{I|L}][KC]{[QG]|[NA]}{I|L}DDT 10 -1 37.896 0 0 3.1569 0 0 0 60.8560613995825 60.8560613995825 7.43588078896337 0 0 0 0 0 1.5228787452803376 0.2614393726401688 0.9049471895720984 [Y{I|L}][KC]{[QG]|[NA]}{I|L}DDT 3.1569 - 5457 NaN NaN 214299.9 NaN 19017 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23461 93.67 NaN 298430 35 0 65473 0.262 -1 0 43 509.80413961470515 1017.5937262962103 2 509.79486083984375 MULTI HCD FTMS 0 0 0 23455 8482.6962890625 0.16201216629856066 -5 0.11434173583984375 6 NaN NaN 2 {I|L}{M(Oxidation (M))|F}[HA]{I|L}S{I|L} 7 -1 38.984 0 0 3.831 0 0 218.12654311347814 0 218.12654311347814 0 35.88508844549963 0 0 0 0 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}[HA]{I|L}S{I|L} 3.831 - 42 NaN NaN 141763.2 NaN 19018 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23462 93.673 NaN 156830 35 0 17418 0.261 + -1 ERFRTCNNF 9 49 622.286112444131 1242.557671955062 2 622.2852172851562 MULTI HCD FTMS 0 0 0 23455 34188.97265625 0.28320106312309556 -3 0.0652008056640625 7 Carbamidomethyl (C) _ERFRTC(Carbamidomethyl (C))NNF_ REV__ENSG00000155592|ENST00000328086|ZKSCAN2;REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF 17.11289562659939 0.2125047172822487 2 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F} 9 -1 + 50.965 0 0 4.1016 4.1016 84.64 0 0 0 6.935749724493121 38.26151861349551 6.935749724493121 8.57840941039747 0 1.305462187404089 0 0 0.3807196863200844 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}N{M(Oxidation (M))|F}N;[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}GGN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}NGG{M(Oxidation (M))|F};[YN][KT]DD{I|L}NN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]NN{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}GG{M(Oxidation (M))|F}N;[YN][KT][DN]{I|L}DN{M(Oxidation (M))|F};[YN][KT]DD{I|L}N{M(Oxidation (M))|F}N;{NN|[MP]|[D{I|L}]|[EV]}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]N{M(Oxidation (M))|F}N 4.1016;3.4112;3.3605;3.3605;3.0187;2.8671;2.6701;2.3924;2.3283;2.1767 -;-;-;-;-;-;-;-;-;- 548 NaN NaN 110660.1 NaN 19019 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23463 93.676 NaN 49310 35 0 5030.8 0.264 + 8853 HLSVQNPD 8 36 455.22549421635205 NaN 0 455.226806640625 PEAK HCD FTMS 0 0 0 23455 23278.8515625 0.5323719515773904 64 -1.4405899047851562 8 Unmodified _HLSVQNPD_ REV__ENSG00000141298|ENST00000540801|SSH2;REV__nc|ENSG00000141298|Q76I76|SSH2 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100693.5 NaN 19020 4441 23455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23465 93.681 NaN 791450 35 0 234980 0.327 + 6746 FPQIGELIL 9 45 515.3027135996462 1028.5908742660922 2 515.3028564453125 MULTI HCD FTMS 0 0 0 23464 342437.375 0.18070735990771422 5 -0.14412689208984375 1 Unmodified _FPQIGELIL_ ENSG00000163510|ENST00000410053|CWC22 43.77239144664712 0.04802738721622131 2 {I|L}GE{I|L}{I|L}{I|L} 6 3 66.191 0 0 6.4351 0 0 372.17996393913705 0 372.17996393913705 0 55.733134811479204 0 0 0 2.305462187404089 0 0.3494850021680094 0 + {I|L}GE{I|L}{I|L}{I|L} 6.4351 + + 57 NaN NaN 209594.3 NaN 19021 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23466 93.686 NaN 172500 35 0 10281 0.261 -1 0 56 437.25721486719715 1308.7498152017915 3 437.25738525390625 MULTI HCD FTMS 0 0 0 23464 112583.8203125 0.2527903414205544 39 -0.8342742919921875 2 NaN NaN 2 Q 1 -1 10.485 0 0 0.80111 0 0 634.3828851254228 543.3017061822874 1177.6845913077102 0 0 0 0 0 0.5 0 0 0 Q 0.80111 - 12 + NaN NaN 114226.5 NaN 19022 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23467 93.689 NaN 135240 35 0 27073 0.261 + -1 KSSLYSSDRIM 11 50 434.88228203144405 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 23464 52568.95703125 0.5311067345265297 37 -0.7917938232421875 3 Oxidation (M) _KSSLYSSDRIM(Oxidation (M))_ REV__ENSG00000176399|ENST00000325870|DMRTA1 1.0135738785822086 0.339244926269168 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.45859 0 0 452.57458972386036 265.08600794010005 717.6605976639604 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.45859 + + 2 + NaN NaN 112289 NaN 19023 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23468 93.693 NaN 255300 35 0 22013 0.261 + 25837 SLVLEREQKLR 11 69 457.60827744250093 1369.803002927703 3 457.6082763671875 MULTI HCD FTMS 0 0 0 23464 64219.85546875 0.17372965231757706 -23 0.5265884399414062 4 Unmodified _SLVLEREQKLR_ REV__ENSG00000160294|ENST00000291688|MCM3AP;REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF;REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF 2.4347853303010236 0.4082425251555256 2 [YE]{M(Oxidation (M))|F} 3 -1 25.942 0 0 1.8939 0 0 0 927.6092827951435 927.6092827951435 17.715299873086607 0 0 0 0 0 1.6989700043360187 0 0 [YE]{M(Oxidation (M))|F} 1.8939 - 21 NaN NaN 130100.2 NaN 19024 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23469 93.696 NaN 315090 35 0 57082 0.261 + 4875 FAFDEIVAL 9 41 512.7710165175781 1023.5274801019563 2 512.7709350585938 MULTI HCD FTMS 0 0 0 23464 102404.1484375 0.19926723549498432 -4 0.09481048583984375 5 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 21.74664581756881 0.17247014374749275 2 D{I|L}VA{I|L} 5 4 49.464 0 0 4.8327 0 0 494.2163563459 0 494.2163563459 0 35.96910013008056 0 0 0 1.5 0 0 0 D{I|L}VA{I|L} 4.8327 - 36 NaN NaN 140936.9 NaN 19025 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23470 93.699 NaN 83473 35 0 7412.4 0.261 + 33639 YIWNTGYLF 9 44 588.7891970214503 1175.5638411097004 2 588.7894897460938 MULTI HCD FTMS 0 0 0 23464 17938.16015625 0.33148456163140994 1 -0.03281402587890625 6 Unmodified _YIWNTGYLF_ ENSG00000174990|ENST00000649794|CA5A 13.90604991867851 0.24021115267848145 2 [Y{I|L}]V 3 7 30.686 0 0 2.6104 0 0 0 797.3262366997973 797.3262366997973 2.0264869790084816 0 0 0 0 0.5 2 0 0 [Y{I|L}]V 2.6104 - 38 NaN NaN 120567.9 NaN 19026 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23471 93.703 NaN 221880 35 0 21122 0.261 + 3437 EFLPFHFLL 9 65 581.8180298058247 1161.6215066784494 2 581.8182373046875 MULTI HCD FTMS 0 0 0 23464 39185.48046875 0.07198271126120209 10 -0.24071502685546875 7 Unmodified _EFLPFHFLL_ ENSG00000227057|ENST00000374617|WDR46 12.531546534597751 0.2520865569484384 2 E{M(Oxidation (M))|F} 2 7 22.959 0 0 1.9764 0 0 867.5005787993463 0 867.5005787993463 0 7.751130462015681 0 0 0 0 0 0.5 0 + E{M(Oxidation (M))|F} 1.9764 + + 189 + NaN NaN 130581.8 NaN 19027 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23472 93.706 NaN 205870 35 0 19575 0.261 + -1 ERFRTCNNF 9 73 622.286112444131 1242.557671955062 2 622.7872924804688 MULTI HCD FTMS 0 0 0 23464 52194.75390625 0.5938648508779711 -1 0.02960968017578125 8 Carbamidomethyl (C) _ERFRTC(Carbamidomethyl (C))NNF_ REV__ENSG00000155592|ENST00000328086|ZKSCAN2;REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF 29.081581746732265 0.1154664336125038 2 N{I|L}DD{I|L}NN{M(Oxidation (M))|F} 8 -1 49.175 0 0 3.9576 0 0 279.12144667793126 0 279.12144667793126 0 35.98767215588211 0 0 0 0 0 0.3494850021680094 1.055462187404089 N{I|L}DD{I|L}NN{M(Oxidation (M))|F} 3.9576 - 245 NaN NaN 132174.1 NaN 19028 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23473 93.709 NaN 49263 35 0 3322.7 0.261 + -1 HKINLLLKGCA 11 37 633.8716000536507 NaN 0 633.8717651367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Carbamidomethyl (C) _HKINLLLKGC(Carbamidomethyl (C))A_ REV__ENSG00000189180|ENST00000432900|ZNF33A;REV__ENSG00000196693|ENST00000359467|ZNF33B;REV__nc|ENSG00000189180|Q06730-3|ZNF33A;REV__nc|ENSG00000189180|Q06730|ZNF33A 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86617.5 NaN 19029 4442 23464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23475 93.714 NaN 7340700 35 0 653080 0.327 + 11186 IYIWDLNNF 9 115 599.3004998777495 1196.586446822299 2 599.3005981445312 MULTI HCD FTMS 0 0 0 23474 5521398.5 1 0 0 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 205.7785088242617 1.0412822304099307E-17 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 107.62 0 0 8.994 8.994 92.4 0 0 0 16.86610358222731 46.34643433451714 16.86610358222731 9.018637558036673 0 2.774227503252014 1.5228787452803376 0.8754223615525999 0.7302046884880937 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{NN|[MP]|[D{I|L}]|[EV]}WNN{M(Oxidation (M))|F};[W{I|L}]Y{I|L}D{I|L}NN{M(Oxidation (M))|F} 8.994;8.2403;8.2245;7.9324;7.4708;7.1787;6.8483;6.0946;6.0251;5.9064 +;-;-;-;-;-;-;-;-;- + 12570 NaN NaN 845275.4 NaN 19030 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23476 93.719 NaN 1557300 35 0 243590 0.261 + 15649 LPEFVEPFL 9 62 545.7947024674303 1089.5748520016605 2 545.7948608398438 MULTI HCD FTMS 0 0 0 23474 842184.1875 0.7104445834701065 3 -0.088531494140625 2 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 58.678817012210395 0.019429721296335044 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 79.715 0 0 7.3162 7.3162 94.719 0 0 0 11.66264035428867 52.26789385964942 11.66264035428867 32.99803764475705 0 1.8807196863200843 1.6989700043360187 0.805462187404089 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}N{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}V{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L}N 7.3162;4.2876;3.3857 -;-;- 148 NaN NaN 347460.8 NaN 19031 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23477 93.722 NaN 280560 35 0 18547 0.261 -1 0 81 524.8273647912825 1047.640176649365 2 524.827392578125 MULTI HCD FTMS 0 0 0 23474 284256.53125 0.3150954988312013 7 -0.17258453369140625 3 NaN NaN 2 Y[{M(Oxidation (M))|F}V] 3 -1 9.8194 0 0 0.93729 0 0 620.4136830060562 0 620.4136830060562 0 0.08741856696815553 0 0 0 0.3252574989159953 0 0 0 Y[{M(Oxidation (M))|F}V] 0.93729 - 46 NaN NaN 151842.3 NaN 19032 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23478 93.726 NaN 289950 35 0 49769 0.261 -1 YLLDTSECCF 10 67 625.75637507693 1249.49819722066 2 625.7567749023438 MULTI HCD FTMS 0 0 0 23474 179252.203125 1 0 0 4 Carbamidomethyl (C) _YLLDTSEC(Carbamidomethyl (C))CF_ ENST00000300469.13_1_20:33117938-33118070:+|nuORF 7.289230182591677 0.43672065049472153 2 [Y{I|L}]{I|L}W 4 -1 31.287 0 0 2.5039 0 0 0 671.1654695197411 671.1654695197411 4.567854309885888 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{I|L}W 2.5039 - 133 NaN NaN 146253.3 NaN 19033 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23479 93.729 NaN 211420 35 0 22121 0.262 -1 IYSLMPLLL 9 62 539.814307348548 1077.614061763896 2 539.814697265625 MULTI HCD FTMS 0 0 0 23474 60263.52734375 0.44942931443854456 13 -0.25299072265625 5 Oxidation (M) _IYSLM(Oxidation (M))PLLL_ ENSG00000151893|ENST00000369151|CACUL1;ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-2|CACUL1;nc|ENSG00000151893|Q86Y37-4|CACUL1 28.486842064014134 0.11819662193267319 2 [Y{I|L}]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}P]{I|L}{I|L} 9 -1 + 33.931 0 0 3.1487 3.1487 88.755 0 0 0 4.137342758552698 29.95113412721772 4.137342758552698 33.930534213938095 0 1 0 0.3807196863200844 0 [Y{I|L}]S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}P]{I|L}{I|L} 3.1487 + + 35 NaN NaN 137926.9 NaN 19034 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23480 93.732 NaN 182570 35 0 36632 0.261 + 25716 SKFFFVDEF 9 41 583.2819239321294 1164.5492949310587 2 583.2819213867188 MULTI HCD FTMS 0 0 0 23474 65066.15625 0.39792559018490076 26 -0.51031494140625 6 Unmodified _SKFFFVDEF_ tr|U7T2A0|U7T2A0_FUSNUGlutamate--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gltXPE=3SV=1 11.640296217721598 0.25978676193971967 2 E{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5 6 41.37 0 0 3.5525 0 0 431.26909581172123 0 431.26909581172123 0 25.172203223519528 0 0 0 0.3807196863200844 0 0.5 0 E{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 3.5525 - 107 + NaN NaN 130426.7 NaN 19035 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23481 93.735 NaN 150300 35 0 22881 0.261 + 23215 RFRQFGYQ 8 42 551.2840412483463 1100.5535295634925 2 551.2833251953125 MULTI HCD FTMS 0 0 0 23474 80293.4140625 0.5250910646677672 6 -0.153289794921875 7 Unmodified _RFRQFGYQ_ ENSG00000172466|ENST00000261332|ZNF24;nc|ENSG00000172466|P17028-2|ZNF24 12.531546534597751 0.5015908124873912 2 S{M(Oxidation (M))|F}[{I|L}P][{M(Oxidation (M))|F}V]{I|L} 7 6 27.223 0 0 2.4736 0 0 279.12181288886876 0 279.12181288886876 0 16.254019516304226 0 0 0 1.4247425010840047 0 0 0 S{M(Oxidation (M))|F}[{I|L}P][{M(Oxidation (M))|F}V]{I|L} 2.4736 - 93 NaN NaN 127011.3 NaN 19036 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23482 93.739 NaN 93042 35 0 14827 0.261 + 30591 VPAAILGLVL 10 24 483.3233065658162 964.6320601984324 2 483.32366943359375 MULTI HCD FTMS 0 0 0 23474 65588.96875 0.5213915287449521 6 -0.153289794921875 8 Unmodified _VPAAILGLVL_ tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1 7.910154910731844 0.4334339971971892 2 V{I|L} 2 8 25.969 0 0 2.6921 0 0 734.4687242042953 0 734.4687242042953 0 10.484550065040281 0 0 0 0.5 0 0 0 + V{I|L} 2.6921 + + 8 NaN NaN 120916.1 NaN 19037 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23483 93.742 NaN 71618 35 0 5345.7 0.261 + 20980 PLLDNSNH 8 53 455.22549421635205 NaN 0 455.2256774902344 PEAK HCD FTMS 0 0 0 23474 35230.89453125 0.8057072758534529 66 -1.4762725830078125 9 Unmodified _PLLDNSNH_ REV__ENSG00000171988|ENST00000399262|JMJD1C;REV__JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;REV__nc|ENSG00000171988|Q15652-2|JMJD1C;REV__nc|ENSG00000171988|Q15652-3|JMJD1C 2.8892196856762586 0.38822285293237185 2 {I|L} 1 -1 4.6041 0 0 0.50682 0 0 585.2154709993073 207.11501489810783 792.3304858974151 0 0 0 0 0 0 0 0 0 {I|L} 0.50682 + + 3 + NaN NaN 110987.8 NaN 19038 4443 23474 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23485 93.747 NaN 2513200 35 0 689500 0.327 + 6124 FPEGLFYEF 9 61 574.7685982649667 1147.5226435967334 2 574.7691040039062 MULTI HCD FTMS 0 0 0 23484 1665487.25 0.5096282767983563 7 -0.15909576416015625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 96.28474662873226 0.004361282420133734 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 85.838 0 0 7.4803 7.4803 92.872 0 0 0 12.795000083553205 16.478174818886373 12.795000083553205 12.795000083553205 0 2.4247425010840047 0 1.1747425010840047 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EG{I|L}[YE]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.4803;6.3653;4.6703;3.5553 -;+;-;- + 298 NaN NaN 485277.7 NaN 19039 4444 23484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23486 93.751 NaN 837050 35 0 78413 0.261 -1 GVCSTVTLNFN 11 102 606.2903524184451 1210.56615190369 2 606.2898559570312 MULTI HCD FTMS 0 0 0 23484 375944.5 0.7098806584784667 1 -0.01955413818359375 2 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 45.69961567697781 0.10024274243180704 2 [Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}NN{M(Oxidation (M))|F} 10 -1 + 85.063 0 0 7.0267 7.0267 85.998 0 0 0 0.3301458953518477 54.11597682053261 0.3301458953518477 0.6821825040524487 0 2.5669015600442577 1.0969100130080565 1.1095756168365019 0.6694451763165201 [Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}NN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}TD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{[ET]|[MV]}D[VP]NN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}TD{I|L}NGG{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}TD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}GGN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{I|L}TD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}[EC][VP]NN{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[NG]{I|L}NN{M(Oxidation (M))|F} 7.0267;6.9704;6.2697;6.2606;6.2133;6.2133;6.0312;5.4593;5.284;5.1739 -;-;-;-;-;-;-;-;-;- 4239 NaN NaN 229590.8 NaN 19040 4444 23484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23487 93.755 NaN 349900 35 0 60626 0.261 + 17235 LYNWEVAIF 9 69 577.7979390933117 1153.5813252534233 2 577.7977905273438 MULTI HCD FTMS 0 0 0 23484 130455.6875 0.3190054835464949 4 -0.10779571533203125 3 Unmodified _LYNWEVAIF_ ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF 58.678817012210395 0.019429721296335044 2 [Y{I|L}]N[WE]VA{I|L}{M(Oxidation (M))|F} 9 0 + 65.468 0 0 5.6752 5.6752 90.899 0 0 0 5.6424927368725974 53.78530614985209 5.6424927368725974 20.00508444608478 0 1.8807196863200843 0 0 1.079689690656103 + + [Y{I|L}]N[WE]VA{I|L}{M(Oxidation (M))|F};[Y{I|L}]GG[WE]VA{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}[WC(Carbamidomethyl (C))][KA]A{I|L}{M(Oxidation (M))|F};[Y{I|L}]N{[VA]|[{I|L}G]}[WE]{I|L}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}G{[QG]|[NA]}{M(Oxidation (M))|F} 5.6752;3.941;2.8921;2.7605;1.2424 +;-;-;-;- + 161 NaN NaN 145247.4 NaN 19041 4444 23484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23488 93.758 NaN 260230 35 0 18821 0.262 -1 0 58 472.27456248487897 471.267286018279 1 472.28363037109375 MULTI HCD FTMS 0 0 0 23484 58110.66015625 0.17708269450382516 -10 0.2620849609375 4 NaN NaN 2 W 1 -1 15.485 0 0 3.2857 0 0 267.17763865675397 0 267.17763865675397 0 -0.9691001300805624 -0.9691001300805624 0 0 0 0 0 0 W 3.2857 - 9 + NaN NaN 126883.8 NaN 19042 4444 23484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23489 93.762 NaN 314340 35 0 32156 0.261 + 29865 VFASILAAF 9 72 469.7702357452719 937.5259185573439 2 469.770751953125 MULTI HCD FTMS 0 0 0 23484 60073.06640625 0.4096671528388542 -2 0.06563568115234375 5 Unmodified _VFASILAAF_ ENSG00000004455|ENST00000672715|AK2;nc|ENSG00000004455|P54819-2|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-6|AK2 67.34385681178166 0.00994769994983633 2 AA{I|L}P{I|L}AA{M(Oxidation (M))|F} 8 4 52.115 0 0 5.5588 0 0 165.0785826556251 0 165.0785826556251 0 46.630937864725155 0 0 0 0 0 0 0 AA{I|L}P{I|L}AA{M(Oxidation (M))|F} 5.5588 - 87 + NaN NaN 152443 NaN 19043 4444 23484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23491 93.767 NaN 2593300 35 0 398120 0.327 + 1013 AYFPELIANF 10 97 592.8031829807909 1183.5918130283817 2 592.8037109375 MULTI HCD FTMS 0 0 0 23490 1335060.5 0.6931019879314867 -1 0.01955413818359375 1 Unmodified _AYFPELIANF_ ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46 199.7497906028788 3.595461345345199E-23 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F} 10 0 + 112.8 0 0 9.5304 9.5304 95.441 0 0 0 18.225351633084642 85.70586735798388 18.225351633084642 12.659389507179355 0 3.1989700043360187 1.5228787452803376 1.0941876774005248 0.3494850021680094 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[KT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K[RP]AAN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}V]HH{I|L}AN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K[RP]AAGG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[WT]|[RM]}QAN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}K[VP]PES{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[{I|L}A]{[WT]|[RM]}GAAN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[ES]|[DT]|[{I|L}C]}RRAAN{M(Oxidation (M))|F} 9.5304;8.4609;6.7699;6.0102;5.7941;5.2359;5.1132;4.8724;4.8626;4.6577 +;-;-;-;-;-;-;-;-;- + 4586 NaN NaN 489874.8 NaN 19044 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23492 93.771 NaN 1553700 35 0 338490 0.261 + 3540 EINPLLELI 9 64 527.313314577704 1052.6120762222079 2 527.3133544921875 MULTI HCD FTMS 0 0 0 23490 429756.84375 0.3907526471706401 -1 0.01955413818359375 2 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 92.65332237495696 0.004456439685314431 2 {[QN]|[E{I|L}]|[KN]}[NP]{I|L}{I|L}E{I|L}{I|L} 9 -1 + 88.254 0 0 8.3843 8.3843 88.15 0 0 0 9.599009323677095 16.478174818886373 9.599009323677095 0.44022814763920337 0 1.9247425010840047 1.3979400086720375 1.110924374808178 0.805462187404089 {[QN]|[E{I|L}]|[KN]}[NP]{I|L}{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}E{I|L}{I|L};[VP]QE{I|L}{I|L}E{I|L}{I|L};[VP][AG]E{I|L}{I|L}E{I|L}{I|L};{[QN]|[E{I|L}]|[KN]}{I|L}{I|L}{I|L}E[NP]{I|L} 8.3843;8.3425;7.4724;5.8324;3.3288 +;-;-;-;- + 118 NaN NaN 335347.4 NaN 19045 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23493 93.775 NaN 771220 35 0 131410 0.261 -1 DRCSRKHNF 9 88 610.2914591042522 1218.5683652753044 2 610.2916870117188 MULTI HCD FTMS 0 0 0 23490 401486 0.7262912583774015 2 -0.05893707275390625 3 Carbamidomethyl (C) _DRC(Carbamidomethyl (C))SRKHNF_ ENSG00000169249|ENST00000307771|ZRSR2;nc|ENSG00000212643|Q15695|ZRSR2P1 19.256988751693697 0.19398022840297344 2 {I|L}Y{I|L}WD{I|L}N 7 -1 93.62 0 0 7.6828 0 0 0 298.0800875299438 298.0800875299438 51.05245541957616 0 0 0 0 2.0994850021680094 1.6989700043360187 0 1.055462187404089 {I|L}Y{I|L}WD{I|L}N 7.6828 - 1278 + NaN NaN 222290.4 NaN 19046 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23494 93.778 NaN 450630 35 0 26943 0.264 -1 0 94 451.93261201226846 1352.7760066370054 3 451.9327392578125 MULTI HCD FTMS 0 0 0 23490 310960.71875 0.5087174365909336 -15 0.3695526123046875 4 NaN NaN 2 S{[HG]|PP}N 4 -1 12.396 0 0 0.91632 0 0 939.5263539044937 0 939.5263539044937 0 1.6946999598069858 0 0 0 0.8494850021680094 0 0 0 S{[HG]|PP}N 0.91632 - 46 NaN NaN 169941.4 NaN 19047 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23495 93.781 NaN 124380 35 0 11931 0.261 + 17656 LYYYDGLANQ 10 54 407.1926415682856 1218.5560953050567 3 407.2039489746094 MULTI HCD FTMS 0 0 0 23490 19415.81640625 0.5125965672539166 -1 0.01955413818359375 5 Unmodified _LYYYDGLANQ_ ENSG00000106125|ENST00000265299|MINDY4;ENST00000409881.1_1_7:30898614-30931617:+|nuORF 8.444304893310646 0.4306066564229251 2 {I|L}Y 2 8 42.206 0 0 3.4636 0 0 0 939.3821108067252 939.3821108067252 40.21652514092061 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 + {I|L}Y 3.4636 + + 6 + NaN NaN 109835.6 NaN 19048 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23496 93.785 NaN 138060 35 0 21564 0.261 + 15861 LPLDEFLEH 9 42 556.7843017099195 1111.554050486639 2 556.784912109375 MULTI HCD FTMS 0 0 0 23490 56097.78125 0.46994708043122596 5 -0.120208740234375 6 Unmodified _LPLDEFLEH_ REV__ENSG00000175105|ENST00000636215|ZNF654 21.74664581756881 0.17247014374749275 2 {I|L}PEYYA{M(Oxidation (M))|F} 7 -1 49.201 0 0 4.4263 0 0 0 225.12420068912346 225.12420068912346 37.21085733450202 0 0 0 0 1.4247425010840047 0 0.9247425010840047 0 {I|L}PEYYA{M(Oxidation (M))|F} 4.4263 - 68 + NaN NaN 114776.6 NaN 19049 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23497 93.788 NaN 619230 35 0 58398 0.261 + 14456 LESWVLFDTW 10 96 648.3191442464066 1294.6237355596131 2 648.8203125 MULTI HCD FTMS 0 0 0 23490 60965.0625 0.24967002466072546 -3 0.0851898193359375 7 Unmodified _LESWVLFDTW_ REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF 29.081581746732265 0.240155558137004 2 {[DS]|[MA]|[CV]|TT}T{I|L}TEET{I|L}TW 11 -1 {[DS]|[MA]|[CV]|TT} + + 67.845 5.2288 2.5875 5.2405 5.2405 62.675 0 0 0 0 38.526384851869736 0 0 0 1.7856668758921828 0 1.4916440611282624 0 {[DS]|[MA]|[CV]|TT}T{I|L}TEET{I|L}TW 5.2405 - 2919 + NaN NaN 186705 NaN 19050 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23498 93.791 NaN 152940 35 0 20201 0.261 + 16706 LYACDSKSEF 10 57 581.7584130924927 1161.5022732517853 2 581.7586059570312 MULTI HCD FTMS 0 0 0 23490 45885.43359375 0.6589673170656727 8 -0.16485595703125 8 Unmodified _LYACDSKSEF_ ENSG00000260314|ENST00000569591|MRC1;nc|ENSG00000260314|P22897-2|MRC1 18.1463463914782 0.3413772152514074 2 YYE{M(Oxidation (M))|F} 4 7 29.285 0 0 2.5213 0 0 541.2586341910416 0 541.2586341910416 0 7.64136888583522 0 0 0 1 0 0.4247425010840047 0 YYE{M(Oxidation (M))|F} 2.5213 - 84 + NaN NaN 117102 NaN 19051 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23499 93.795 NaN 128850 35 0 10457 0.261 -1 0 48 533.3405002540355 1064.666447574871 2 533.341064453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.9695 0 0 786.5037411313148 0 786.5037411313148 0 11.505149978319906 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9695 - 30 + NaN NaN 118069.7 NaN 19052 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23500 93.798 NaN 234040 35 0 15678 0.261 + 33155 YELLSLFVF 9 64 565.8102931516922 1129.6060333701844 2 566.29736328125 MULTI HCD FTMS 0 0 0 23490 24252.046875 0.19366994788072836 9 -0.1721343994140625 10 Unmodified _YELLSLFVF_ REV__ENSG00000268089|ENST00000598523|GABRQ 9.347437153973935 0.2795965555214564 2 WSW 3 -1 21.682 0 0 1.9195 0 0 652.4070720438157 0 652.4070720438157 0 6.2763625255165305 0 0 0 0 0 0 0 WSW 1.9195 - 199 + NaN NaN 140459.3 NaN 19053 4445 23490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23502 93.803 NaN 392960 35 0 65818 0.327 + -1 FPCCFLTWP 9 60 585.7594676403127 1169.5043823474252 2 585.759765625 MULTI HCD FTMS 0 0 0 23501 284859.40625 0.554364273390013 10 -0.164459228515625 1 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 23.1484247019978 0.1603590852062899 2 Y{M(Oxidation (M))|F}{I|L}GEPE 7 -1 68.492 0 0 5.8565 0 0 316.1037770001969 0 316.1037770001969 0 35.80152905678226 0 0 0 1.6549471895720984 0 0.7742275032520141 0 Y{M(Oxidation (M))|F}{I|L}GEPE 5.8565 - 386 NaN NaN 173542.5 NaN 19054 4446 23501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23503 93.807 NaN 291800 35 0 17980 0.261 -1 0 91 516.3143345560146 1030.6141161788291 2 516.314453125 MULTI HCD FTMS 0 0 0 23501 100543.125 0.10518151132001231 10 -0.164459228515625 2 NaN NaN 2 [Y{I|L}]{I|L}WD 5 -1 27.051 0 0 2.6248 0 0 0 337.25288505994166 337.25288505994166 22.525749891599528 0 0 0 0 0 1.3010299956639813 0.3494850021680094 0 [Y{I|L}]{I|L}WD 2.6248 - 158 NaN NaN 133506.8 NaN 19055 4446 23501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23504 93.811 NaN 418310 35 0 88333 0.261 + 6610 FPLPTASSPFL 11 58 588.8184591400842 1175.6223653469683 2 588.8185424804688 MULTI HCD FTMS 0 0 0 23501 187905.3125 0.32875724439584475 -7 0.1899566650390625 3 Unmodified _FPLPTASSPFL_ ENST00000311481.10_1_11:66043945-66044302:+|nuORF 30.636539890814138 0.19725369097074727 2 TP{M(Oxidation (M))|F}{I|L} 4 7 41.938 0 0 3.5673 0 0 699.3627796857437 0 699.3627796857437 0 17.501225267834002 0 0 0 0.9247425010840047 0 0.4247425010840047 0 TP{M(Oxidation (M))|F}{I|L} 3.5673 - 96 NaN NaN 154821.9 NaN 19056 4446 23501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23505 93.814 NaN 227540 35 0 43484 0.261 -1 LPDLLIFQM 9 50 553.3017704842172 1104.5889880352343 2 553.3021850585938 MULTI HCD FTMS 0 0 0 23501 131420.828125 0.603023789409883 -11 0.29152679443359375 4 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 -1 41.995 0 0 3.8018 0 0 664.4165448478717 0 664.4165448478717 0 32.53083433768431 0 0 0 1.5 0 0 0.3807196863200844 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3.8018 + + 39 + NaN NaN 138492.9 NaN 19057 4446 23501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23506 93.817 NaN 251500 35 0 21502 0.261 + 30412 VLPDMFFSF 9 54 559.7650715948189 NaN 0 559.7642822265625 PEAK HCD FTMS 0 0 0 23501 23856.787109375 0.19038252896821675 -12 0.3177947998046875 5 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 64.23631603340823 0.017424957411157443 2 NW[RP]{M(Oxidation (M))|F}S 6 6 33.703 0 0 3.0159 0 0 165.07488846999325 162.05597864322502 327.1308671132183 0 0 0 0 0 0.9247425010840047 0 1.055462187404089 0 NW[RP]{M(Oxidation (M))|F}S 3.0159 - 144 + NaN NaN 152771.9 NaN 19058 4446 23501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23507 93.821 NaN 71025 35 0 5890.3 0.261 -1 ANSKAQMLIAW 11 43 624.8244054501058 NaN 0 624.8241577148438 PEAK HCD FTMS 0 0 0 23501 42464.83203125 0.8617753496667725 -1 0.03615570068359375 6 Oxidation (M) _ANSKAQM(Oxidation (M))LIAW_ ENST00000441876.6_1_22:45728453-45732244:+|nuORF 4.189502756095605 0.3302357306631285 2 {I|L} 1 -1 5.4846 0 0 0.4396 0 0 796.4667602636897 335.06171594791255 1131.5284762116023 0 0 0 0 0 0 0 0 0 {I|L} 0.4396 + + 3 + NaN NaN 117292.4 NaN 19059 4446 23501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23509 93.825 NaN 519370 35 0 50202 0.326 -1 GVCSTVTLNFN 11 87 606.2903524184451 1210.56615190369 2 606.2897338867188 MULTI HCD FTMS 0 0 0 23508 238235.453125 0.44985028464917265 4 -0.08060455322265625 1 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 31.26834338654808 0.19318467762437158 2 C(Carbamidomethyl (C)){I|L}WD{I|L}NN{M(Oxidation (M))|F} 8 -1 77.825 0 0 6.4288 0 0 130.10395089099535 0 130.10395089099535 0 27.688185436324304 0 0 0 3.1549471895720984 0 0.8441876774005248 1.4124379954164592 C(Carbamidomethyl (C)){I|L}WD{I|L}NN{M(Oxidation (M))|F} 6.4288 - 2381 + NaN NaN 164179.5 NaN 19060 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23510 93.83 NaN 337490 35 0 75763 0.262 -1 0 57 509.80413961470515 1017.5937262962103 2 509.79461669921875 MULTI HCD FTMS 0 0 0 23508 52358.390625 1 0 0 2 NaN NaN 2 {I|L}{M(Oxidation (M))|F}[HA]{I|L}S{I|L} 7 -1 38.984 0 0 3.831 0 0 218.12637526679845 0 218.12637526679845 0 23.29766987853148 0 0 0 0 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}[HA]{I|L}S{I|L} 3.831 - 67 NaN NaN 145160.7 NaN 19061 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23511 93.833 NaN 283760 35 0 17979 0.261 + 25838 SLVLEREQKLR 11 76 457.60827744250093 1369.803002927703 3 457.608642578125 MULTI HCD FTMS 0 0 0 23508 204789.015625 0.5540019394827612 -18 0.45477294921875 3 Unmodified _SLVLEREQKLR_ REV__ENSG00000160294|ENST00000291688|MCM3AP;REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF;REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF 2.4347853303010236 0.4082425251555256 2 [YE]{M(Oxidation (M))|F} 3 -1 25.062 0 0 1.8296 0 0 0 927.6118157541279 927.6118157541279 12.29745883207972 0 0 0 0 0 1.6989700043360187 0 0 [YE]{M(Oxidation (M))|F} 1.8296 - 20 NaN NaN 136116.8 NaN 19062 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23512 93.837 NaN 149630 35 0 6690.9 0.261 -1 0 63 437.25721486719715 1308.7498152017915 3 437.2577209472656 MULTI HCD FTMS 0 0 0 23508 75557.3125 0.16965278643661255 44 -0.9465103149414062 4 NaN NaN 2 Q 1 -1 4.9608 0 0 0.37905 0 0 960.5593072445635 217.1083162897094 1177.667623534273 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.37905 - 48 + NaN NaN 102372.4 NaN 19063 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23513 93.84 NaN 110040 35 0 9872 0.261 + 11154 IYIPTLAVL 9 39 501.81487960571746 1001.615206278235 2 501.8147888183594 MULTI HCD FTMS 0 0 0 23508 16204.412109375 0.19064636300173396 1 -0.02930450439453125 5 Unmodified _IYIPTLAVL_ ENSG00000064601|ENST00000646241|CTSA;ENST00000485627.1_1_20:44520959-44522735:+|nuORF;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;nc|ENSG00000064601|P10619-2|CTSA 21.74664581756881 0.17247014374749275 2 AV{I|L} 3 6 30.445 0 0 3.0396 0 0 700.415972871174 0 700.415972871174 0 18.455612550363796 0 0 0 0.4247425010840047 0 0 0 + AV{I|L} 3.0396 + + 20 NaN NaN 127531.1 NaN 19064 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23514 93.843 NaN 181040 35 0 23184 0.261 + 7820 FYQGLVYLL 9 48 558.31048652492 1114.6064201166398 2 558.3102416992188 MULTI HCD FTMS 0 0 0 23508 60401.546875 0.7513710771527311 4 -0.08060455322265625 6 Unmodified _FYQGLVYLL_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 12.531546534597751 0.2520865569484384 2 [Y{I|L}]V 3 6 21.171 0 0 1.8994 0 0 0 736.3679917321273 736.3679917321273 2.001962355242952 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]V 1.8994 - 152 NaN NaN 128095.7 NaN 19065 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23515 93.847 NaN 77730 35 0 5928.9 0.261 + 32772 WRQAAPFAL 9 40 530.2894683953358 1058.5643838574715 2 530.7894287109375 MULTI HCD FTMS 0 0 0 23508 14663.916015625 0.33463299824534315 1 -0.02930450439453125 7 Unmodified _WRQAAPFAL_ ENSG00000176087|ENST00000323146|SLC35A4 7.910154910731844 0.2910521888787154 2 A{I|L}TS[YR]A{I|L} 8 7 30.17 0 0 2.8501 0 0 165.07884413886876 0 165.07884413886876 0 4.596463608100336 0 0 0 0.5 0 0 0 A{I|L}TS[YR]A{I|L} 2.8501 - 98 NaN NaN 113028.7 NaN 19066 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23516 93.85 NaN 111350 35 0 16971 0.261 + 14272 LCSSPLVSLF 10 43 533.284701130405 NaN 0 533.2846069335938 PEAK HCD FTMS 0 0 0 23508 34165.16015625 0.4403925702228861 -1 0.0227813720703125 8 Unmodified _LCSSPLVSLF_ REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF 13.90604991867851 0.3282826376286837 2 {I|L}E 2 -1 19.464 0 0 1.8284 0 0 165.07937769475353 654.3055513971311 819.3849290918847 0 0 0 0 0 1 0 0 0 {I|L}E 1.8284 - 8 + NaN NaN 106674.2 NaN 19067 4447 23508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23518 93.855 NaN 3220500 35 0 272230 0.327 + 11187 IYIWDLNNF 9 109 599.3004998777495 1196.586446822299 2 599.30078125 MULTI HCD FTMS 0 0 0 23517 2445933.5 0.4429916623478635 5 -0.0766143798828125 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 189.77610602135977 4.071947121966932E-13 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 107.7 0 0 9.0003 9.0003 92.437 0 0 0 21.68457516505744 60.64276931555949 21.68457516505744 9.018637558036687 0 2.774227503252014 1.5228787452803376 0.8516784832448856 0.7614393726401688 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{NN|[MP]|[D{I|L}]|[EV]}WNN{M(Oxidation (M))|F};[W{I|L}]Y{I|L}D{I|L}NN{M(Oxidation (M))|F} 9.0003;8.2466;8.2307;7.9126;7.477;7.1589;6.8285;6.0748;6.0237;5.8642 +;-;-;-;-;-;-;-;-;- + 6713 NaN NaN 502355 NaN 19068 4448 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23519 93.859 NaN 407090 35 0 77710 0.261 + 4876 FAFDEIVAL 9 45 512.7710165175781 1023.5274801019563 2 512.7710571289062 MULTI HCD FTMS 0 0 0 23517 492526.3125 0.9584021565328857 2 -0.0319671630859375 2 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 54.773552608820026 0.024892918755467567 2 E{I|L}VA{I|L} 5 4 59.508 0 0 5.814 0 0 480.2001209943375 0 480.2001209943375 0 53.566147098514705 0 0 0 1.774227503252014 0 0.7302046884880937 0 + E{I|L}VA{I|L} 5.814 + + 56 NaN NaN 159011.8 NaN 19069 4448 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23520 93.863 NaN 89402 35 0 9551.2 0.261 + 32442 WCRSGFLFNN 10 41 622.286112444131 1242.557671955062 2 622.2850952148438 MULTI HCD FTMS 0 0 0 23517 39992.01953125 0.3312700431675348 4 -0.06728363037109375 3 Unmodified _WCRSGFLFNN_ REV__ENSG00000127989|ENST00000351870|MTERF1 8.155526934196011 0.43213520406898465 2 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 9 -1 + 37.33 0 0 3.0043 3.0043 83.423 0 0 0 17.90484985457369 15.902887499330738 15.902887499330738 8.010299956639816 0 0.9247425010840047 1.3979400086720375 0 0 [YN]{I|L}[WC(Carbamidomethyl (C))]{I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F};[YN]{I|L}[WC(Carbamidomethyl (C))]A[RN]{M(Oxidation (M))|F} 3.0043;2.3596 -;- 86 NaN NaN 110119.6 NaN 19070 4448 23517 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23522 93.867 NaN 154270 35 0 33430 0.327 + 32840 WVLSGELLL 9 40 515.3027135996462 1028.5908742660922 2 515.3023681640625 MULTI HCD FTMS 0 0 0 23521 60588.02734375 0.03197286062394755 12 -0.169952392578125 1 Unmodified _WVLSGELLL_ REV__ENSG00000120733|ENST00000314358|KDM3B;REV__KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant;REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant 20.453626601364224 0.18364154288633264 2 W{I|L}{I|L}{I|L} 4 -1 46.186 0 0 4.4902 0 0 485.26304824043126 0 485.26304824043126 0 43.96713777483761 0 0 0 1.4247425010840047 0 0 0 W{I|L}{I|L}{I|L} 4.4902 - 22 NaN NaN 109991.2 NaN 19071 4449 23521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23523 93.872 NaN 312720 35 0 45324 0.261 + 15650 LPEFVEPFL 9 42 545.7947024674303 1089.5748520016605 2 546.296875 MULTI HCD FTMS 0 0 0 23521 23457.9375 0.035191576832087686 9 -0.11919403076171875 2 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 30.636539890814138 0.10832830463492794 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 70.111 0 0 6.4347 6.4347 94.318 0 0 0 16.222412206649466 70.11107503885448 16.222412206649466 70.11107503885448 0 1.4247425010840047 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 6.4347 - 38 NaN NaN 141610.9 NaN 19072 4449 23521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23524 93.875 NaN 418390 35 0 54531 0.261 + 10149 IFQDVLLQF 9 49 561.813093390506 1121.6116338478118 2 561.8133544921875 MULTI HCD FTMS 0 0 0 23521 95496.6640625 0.3359535455440736 -4 0.10091400146484375 3 Unmodified _IFQDVLLQF_ ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000184634|Q93074-3|MED12 18.373094154950223 0.20161688160436167 2 {I|L}{I|L}Q{M(Oxidation (M))|F} 4 5 39.412 0 0 3.5139 0 0 602.3054903136488 0 602.3054903136488 0 7.808487663269972 0 0 0 1.3494850021680094 0 0 0 + {I|L}{I|L}Q{M(Oxidation (M))|F} 3.5139 + + 289 NaN NaN 162563.6 NaN 19073 4449 23521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23525 93.879 NaN 166090 35 0 26242 0.261 + -1 PCCCTTQCC 9 43 538.1618242220345 NaN 0 538.3040771484375 PEAK HCD FTMS 0 0 0 23521 26917.216796875 0.7740044397263288 -1 0.01267242431640625 4 2 Carbamidomethyl (C) _PC(Carbamidomethyl (C))C(Carbamidomethyl (C))CTTQCC_ REV__CON__Q9BYQ7;REV__ENSG00000198443|ENST00000398472|KRTAP4-1 0.6014990680409731 0.29233206172879045 2 PY 2 -1 9.464 0 0 0.88093 0 0 112.80046440325789 698.3518770807249 811.1523414839828 0 0 0 0 0 0 0 0 0 PY 0.88093 - 8 + NaN NaN 108748.4 NaN 19074 4449 23521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23526 93.882 NaN 94727 35 0 5379.4 0.261 -1 0 61 524.8273647912825 1047.640176649365 2 524.8273315429688 MULTI HCD FTMS 0 0 0 23521 26379.78125 0.029241721537494915 13 -0.179412841796875 5 NaN NaN 2 {M(Oxidation (M))|F}G[WP] 4 -1 8.4164 0 0 0.80337 0 0 542.3970258698713 0 542.3970258698713 0 0.9421249706470327 0 0 0 0 0 0 0 {M(Oxidation (M))|F}G[WP] 0.80337 - 26 + NaN NaN 105349.8 NaN 19075 4449 23521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23528 93.887 NaN 1579700 35 0 449790 0.327 + 6125 FPEGLFYEF 9 61 574.7685982649667 1147.5226435967334 2 574.7687377929688 MULTI HCD FTMS 0 0 0 23527 1113511.25 0.340727207328116 13 -0.1952056884765625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 74.92900055777586 0.007493270374442853 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 75.568 0 0 6.5854 6.5854 94.714 0 0 0 1.1386046212903125 49.370514164935514 1.1386046212903125 75.56840174781945 0 2.6989700043360187 0 0.6694451763165201 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 6.5854 - 144 NaN NaN 327619.3 NaN 19076 4450 23527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23529 93.891 NaN 330560 35 0 26865 0.261 -1 GVCSTVTLNFN 11 71 606.2903524184451 1210.56615190369 2 606.2898559570312 MULTI HCD FTMS 0 0 0 23527 135368.28125 0.2556104016173884 7 -0.09307098388671875 2 Carbamidomethyl (C) _GVC(Carbamidomethyl (C))STVTLNFN_ ENSG00000141098|ENST00000268797|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;nc|ENSG00000141098|Q3B7J2-2|GFOD2 31.26834338654808 0.19318467762437158 2 [Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}NN{M(Oxidation (M))|F} 10 -1 + 75.737 0 0 6.2563 6.2563 88.285 0 0 0 2.001962355242952 47.796269448807216 2.001962355242952 9.164539485499262 0 2.7302046884880937 1.154901959985743 0.3252574989159953 0.4247425010840047 [Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{[ET]|[MV]}D[VP]NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}[EC][VP]NN{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[NG]{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}DN{I|L}N{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}DNQV{M(Oxidation (M))|F};[Y{I|L}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}V{[QG]|[NA]}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CP]|[EA]}DGG{I|L}N{M(Oxidation (M))|F} 6.2563;5.4992;5.4992;5.4676;4.7295;4.4739;4.3579;4.0223;3.6668;3.6009 -;-;-;-;-;-;-;-;-;- 1587 NaN NaN 136904.4 NaN 19077 4450 23527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23530 93.895 NaN 209140 35 0 29977 0.261 + 15651 LPEFVEPFL 9 44 545.7947024674303 1089.5748520016605 2 545.7940063476562 MULTI HCD FTMS 0 0 0 23527 105236.9375 0.08877513177942103 10 -0.12490081787109375 3 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 25.399314129420986 0.14091189997036632 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 9 2 + 66.132 0 0 6.0695 6.0695 93.631 0 0 0 17.420299789533402 66.1316749521341 17.420299789533402 66.1316749521341 0 1.4247425010840047 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[QN]|[E{I|L}]|[KN]}VEP{M(Oxidation (M))|F}{I|L} 6.0695 - 39 NaN NaN 115404.5 NaN 19078 4450 23527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23531 93.898 NaN 465490 35 0 67055 0.261 + 26871 SYIPLFPQL 9 51 539.302385658988 1076.5902183847759 2 539.8046875 MULTI HCD FTMS 0 0 0 23527 77907.890625 0.2547722028839238 -10 0.26116943359375 4 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 27.628801355627647 0.12213550946336599 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 27.91 0 0 2.5924 2.5924 86.837 0 0 0 7.147642715192507 15.145724457369564 7.147642715192507 15.516609670558594 0 1.3807196863200843 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}P][KP] 2.5924;1.1512 +;- + 86 NaN NaN 170394.8 NaN 19079 4450 23527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23532 93.901 NaN 123640 35 0 22720 0.261 + 16604 LVPWWRSLPL 10 56 633.8701930987645 NaN 0 633.870849609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LVPWWRSLPL_ ENST00000402802.7_1_7:536981-537197:-|nuORF 3.2813086475875832 0.33737594360511275 2 {I|L} 1 9 2.7642 0 0 0.21839 0 0 847.5052349750696 302.1141756647094 1149.619410639779 0 0 0 0 0 0 0 0 0 + {I|L} 0.21839 + + 4 + NaN NaN 129289.1 NaN 19080 4450 23527 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23534 93.906 NaN 1302600 35 0 179150 0.327 + 1014 AYFPELIANF 10 82 592.8031829807909 1183.5918130283817 2 592.8030395507812 MULTI HCD FTMS 0 0 0 23533 567328.625 0.2945309203574946 5 -0.06107330322265625 1 Unmodified _AYFPELIANF_ ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46 121.5340881639634 3.6524484282344266E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F} 10 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} + + 76.464 18.952 8.0958 6.4603 6.4603 64.668 0 0 0 0 58.55896923271671 0 0 0 3.416386562212267 0 0.3252574989159953 1.2416440611282626 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PE{I|L}{I|L}AN{M(Oxidation (M))|F} 6.4603 + + 1809 + NaN NaN 293383.4 NaN 19081 4451 23533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23535 93.91 NaN 475980 35 0 28323 0.263 -1 0 92 451.93261201226846 1352.7760066370054 3 451.9322204589844 MULTI HCD FTMS 0 0 0 23533 466335.5 0.7629034339288274 -9 0.2247314453125 2 NaN NaN 2 N{[HG]|PP}N 4 -1 15.177 0 0 1.1219 0 0 912.513963767775 0 912.513963767775 0 5.695990759876109 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.1219 - 47 NaN NaN 166811.2 NaN 19082 4451 23533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23536 93.914 NaN 521980 35 0 111600 0.261 + 3541 EINPLLELI 9 40 527.313314577704 1052.6120762222079 2 527.3128051757812 MULTI HCD FTMS 0 0 0 23533 220219.734375 0.20023286520669042 5 -0.06107330322265625 3 Unmodified _EINPLLELI_ REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1 38.175570920033316 0.07371992880350783 2 {[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}E{I|L}{I|L} 9 -1 + 62.413 0 0 5.9294 5.9294 93.335 0 0 0 6.712046717774527 43.90092514408778 6.712046717774527 62.41312192373542 0 1.5 0 0.7302046884880937 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}{I|L}[NP]{I|L}E{I|L}{I|L} 5.9294 - 59 NaN NaN 171973.2 NaN 19083 4451 23533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23537 93.917 NaN 473040 35 0 50481 0.261 + 29929 VFEEAFFSF 9 58 561.7607710328921 1121.506989132584 2 561.7603759765625 MULTI HCD FTMS 0 0 0 23533 82462.78125 0.4307571083740248 -7 0.15909576416015625 4 Unmodified _VFEEAFFSF_ ENSG00000004939|ENST00000262418|SLC4A1;ENSG00000164889|ENST00000413384|SLC4A2;nc|ENSG00000004939|P02730-2|SLC4A1;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant 68.08070601005525 0.009709267492204555 2 A{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5 4 59.839 0 0 5.3356 0 0 504.2233110093403 0 504.2233110093403 0 43.15675328855981 0 0 0 2.1747425010840047 0 1.1549471895720984 0 + A{M(Oxidation (M))|F}{M(Oxidation (M))|F}S{M(Oxidation (M))|F} 5.3356 + + 262 + NaN NaN 183879.7 NaN 19084 4451 23533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23539 93.922 NaN 294910 35 0 18889 0.327 + 14457 LESWVLFDTW 10 81 648.3191442464066 1294.6237355596131 2 648.3196411132812 MULTI HCD FTMS 0 0 0 23538 139631.625 0.5512103198749448 4 -0.0450897216796875 1 Unmodified _LESWVLFDTW_ REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF 19.256988751693697 0.33098864134661865 2 {I|L}TT{I|L}[HD]P 7 -1 50.767 0 0 3.9214 0 0 0 514.2301119440061 514.2301119440061 2.891842952765572 0 0 0 0 1.7614393726401687 1.2218487496163564 0 0 {I|L}TT{I|L}[HD]P 3.9214 - 512 + NaN NaN 131475.4 NaN 19085 4452 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23540 93.926 NaN 222170 35 0 20741 0.261 -1 VFMIDRDNSV 10 63 606.2903524184451 1210.56615190369 2 606.2918090820312 MULTI HCD FTMS 0 0 0 23538 113553.984375 0.21441935498718168 9 -0.1153411865234375 2 Oxidation (M) _VFM(Oxidation (M))IDRDNSV_ ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT 16.149105407346934 0.3600587335443843 2 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 7 -1 71.362 0 0 5.895 0 0 290.125780174025 0 290.125780174025 0 49.93578560905462 0 0 0 2.7614393726401687 0 0 0.3807196863200844 {I|L}WD{I|L}NN{M(Oxidation (M))|F} 5.895 - 615 NaN NaN 130638.1 NaN 19086 4452 23538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23542 93.931 NaN 774700 35 0 177200 0.411 + 30734 VPIQDTFPFL 10 81 588.8184591400842 1175.6223653469683 2 588.8190307617188 MULTI HCD FTMS 0 0 0 23541 571562.5 1 0 0 1 Unmodified _VPIQDTFPFL_ ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 65.47368725323818 0.022948616544343086 2 QDT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 7 3 72.656 0 0 6.1802 0 0 309.20469863105626 0 309.20469863105626 0 47.594501252857384 0 0 0 2.1989700043360187 0 1.1861818737241734 0 + QDT{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 6.1802 + + 730 NaN NaN 318095.2 NaN 19087 4453 23541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23544 93.938 NaN 352110 35 0 71579 0.327 + 15458 LPDLLIFQM 9 50 553.3017704842172 1104.5889880352343 2 553.8036499023438 MULTI HCD FTMS 0 0 0 23543 94216.34375 0.4305355306200334 1 -0.015777587890625 1 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 49.93300154707207 0.03166451819912738 2 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 51.065 0 0 4.623 4.623 86.374 0 0 0 3.0057560012586038 33.14589961925982 3.0057560012586038 9.208187539523749 0 1.9247425010840047 0 0.4247425010840047 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};{I|L}{I|L}[DP]{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 4.623;3.7894;3.3575 -;-;- 76 NaN NaN 141430.9 NaN 19088 4454 23543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23545 93.943 NaN 287620 35 0 41770 0.261 + -1 FPCCFLTWP 9 65 585.7594676403127 1169.5043823474252 2 585.7601318359375 MULTI HCD FTMS 0 0 0 23543 224446.328125 0.43679451292850563 18 -0.35764312744140625 2 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 18.13498045792455 0.20367413111508956 2 Y{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EPE 7 -1 52.523 0 0 4.4911 0 0 316.1031666486344 0 316.1031666486344 0 30.5631798888494 0 0 0 1.1989700043360187 0 0.7302046884880937 0 Y{M(Oxidation (M))|F}{[VA]|[{I|L}G]}EPE 4.4911 - 101 NaN NaN 132393 NaN 19089 4454 23543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23546 93.946 NaN 179630 35 0 14266 0.261 + 17236 LYNWEVAIF 9 46 577.7995408202132 NaN 0 577.8009033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LYNWEVAIF_ ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2;ENST00000586788.1_1_19:531880-536341:+|nuORF 16.149105407346934 0.21324626030841579 2 {I|L}AV 3 7 19.055 0 0 1.6518 0 0 165.08220727123643 702.2897432916624 867.3719505628987 0 0 0 0 0 0.8252574989159953 0 0 0 {I|L}AV 1.6518 - 88 + NaN NaN 110536.1 NaN 19090 4454 23543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23547 93.95 NaN 175980 35 0 33003 0.261 -1 MYCAWMWP 8 54 601.726123243684 NaN 0 601.7260131835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))MYC(Carbamidomethyl (C))AWM(Oxidation (M))WP_ ENST00000264110.6_1_2:175986236-175994890:-|nuORF;nc|ENSG00000115966|P15336-4|ATF2 0.7936320650641473 0.38822285293237185 2 D 1 -1 5.4846 0 0 0.4565 0 0 294.9257439465492 788.4649752252561 1083.3907191718054 0 0 0 0 0 0 0 0 0 D 0.4565 - 4 + NaN NaN 117832.2 NaN 19091 4454 23543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23549 93.954 NaN 160960 35 0 15992 0.326 + 27497 SYYSSPFAFF 10 51 608.2714983424976 1214.528443751795 2 608.2716064453125 MULTI HCD FTMS 0 0 0 23548 80809.9921875 0.38911286060170963 1 -0.01270294189453125 1 Unmodified _SYYSSPFAFF_ ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF;ENST00000492084.5_1_6:31654991-31670409:-|nuORF 71.92227651296345 0.015307609975375192 2 {[{M(Oxidation (M))|F}C]|[YS]}YSS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 70.667 0 0 5.8185 5.8185 93.344 0 0 0 7.269987279362624 61.71449725344253 7.269987279362624 70.66692218072937 0 2.2302046884880937 0 1.1989700043360187 0 + + {[{M(Oxidation (M))|F}C]|[YS]}YSS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.8185 + + 175 NaN NaN 129099.7 NaN 19092 4455 23548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23550 93.959 NaN 213410 35 0 70597 0.261 + 23836 RRSRAHKWVA 10 56 633.8701930987645 NaN 0 633.8699340820312 PEAK HCD FTMS 0 0 0 23548 40576.4140625 0.5035420548542715 1 -0.01270294189453125 2 Unmodified _RRSRAHKWVA_ REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF 3.2813086475875832 0.33737594360511275 2 D 1 -1 6.9061 0 0 0.54563 0 0 687.3637631161768 460.3076713036323 1147.671434419809 0 0 0 0 0 0 0 0.3807196863200844 0 D 0.54563 - 17 + NaN NaN 128644.2 NaN 19093 4455 23548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23551 93.962 NaN 132060 35 0 9007.8 0.262 + 7923 GARRRGLVF 9 64 516.3143345560146 1030.6141161788291 2 516.3141479492188 MULTI HCD FTMS 0 0 0 23548 50068.734375 0.05237857040392122 18 -0.361419677734375 3 Unmodified _GARRRGLVF_ REV__ENST00000435475.5_1_1:109419917-109420064:+|nuORF 4.3292370932331545 0.3181982124262546 2 S 1 -1 8.0989 0 0 0.78584 0 0 133.11907330949163 807.4581392877561 940.5772125972478 0 0 0 0 0 0.5 0 0 0 S 0.78584 - 41 + NaN NaN 109313.4 NaN 19094 4455 23548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23553 93.967 NaN 385210 35 0 22469 0.327 + 23050 RDRLLSIELQK 11 77 457.60827744250093 1369.803002927703 3 457.609130859375 MULTI HCD FTMS 0 0 0 23552 342872.78125 0.9275506561161465 -9 0.1416778564453125 1 Unmodified _RDRLLSIELQK_ ENSG00000166578|ENST00000416617|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;nc|ENSG00000166578|Q96DY2-3|IQCD 1.214830529360525 0.41359283248740725 2 C(Carbamidomethyl (C)) 1 11 7.4743 0 0 0.54564 0 0 1077.697547460709 129.0556582086547 1206.7532056693638 0 0 0 0 0 0.3494850021680094 0 0 0 C(Carbamidomethyl (C)) 0.54564 - 22 + NaN NaN 158524.6 NaN 19095 4456 23552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23554 93.971 NaN 248480 35 0 34650 0.261 + 30413 VLPDMFFSF 9 56 559.7650715948189 NaN 0 559.7652587890625 PEAK HCD FTMS 0 0 0 23552 125275.84375 0.9997294204960109 -2 0.02848052978515625 2 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 64.23631603340823 0.017424957411157443 2 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}RYS 6 7 41.177 0 0 3.6847 0 0 165.077203289554 162.05610071353752 327.13330400309155 0 0 0 0 0 0.4247425010840047 0 0.7059771852360797 0.3494850021680094 S{M(Oxidation (M))|F}{M(Oxidation (M))|F}RYS 3.6847 - 200 + NaN NaN 147265.6 NaN 19096 4456 23552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23555 93.975 NaN 94776 35 0 5382.5 0.263 -1 TRTLRATRRH 10 53 437.25747185220166 1308.750586156805 3 437.2580261230469 MULTI HCD FTMS 0 0 0 23552 119824.34375 1 0 0 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))TRTLRATRRH_ ENST00000468303.5_1_1:24742100-24742349:-|nuORF 0.6268255596534771 0.47198581731947004 2 Q 1 -1 5.7133 0 0 0.43655 0 0 960.5600781995769 217.1079500787719 1177.6680282783489 0 0 0 0 0 0.5 0 0 0 Q 0.43655 - 1 + NaN NaN 110933.8 NaN 19097 4456 23552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23557 93.98 NaN 1293500 35 0 110900 0.326 + 11188 IYIWDLNNF 9 87 599.3004998777495 1196.586446822299 2 599.3009033203125 MULTI HCD FTMS 0 0 0 23556 813106.3125 0.1472645585171945 14 -0.29035186767578125 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 189.77610602135977 4.071947121966932E-13 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 106.44 0 0 8.8954 8.8954 93.229 0 0 0 1.339008272077379 1.339008272077379 1.339008272077379 9.208187539523749 0 2.6989700043360187 1.5228787452803376 0.5629529932484498 0.6989700043360187 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]WVE{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]W{I|L}D{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]WVE{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]WVE{I|L}GGN{M(Oxidation (M))|F} 8.8954;8.1259;8.0858;8.014;7.3163;7.0805;7.0242;6.7759;6.311;6.0189 +;-;-;-;-;-;-;-;-;- + 4738 NaN NaN 286671.1 NaN 19098 4457 23556 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23559 93.986 NaN 157040 35 0 9968.5 0.327 + 21420 PVRSRRRRQ 9 84 605.8718204675106 1209.729088001821 2 605.87255859375 MULTI HCD FTMS 0 0 0 23558 122221.8984375 0.6829147205364418 -3 0.032196044921875 1 Unmodified _PVRSRRRRQ_ REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF 3.944395688203298 0.32111559684428237 2 DN[VP]D{I|L}N{M(Oxidation (M))|F}N 9 -1 18.478 0 0 1.5275 0 0 163.26102267154607 0 163.26102267154607 0 10.251218656855702 0 0 0 0.1549471895720985 0 0.2742275032520141 0.3807196863200844 DN[VP]D{I|L}N{M(Oxidation (M))|F}N 1.5275 - 401 + NaN NaN 116545.8 NaN 19099 4458 23558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23560 93.99 NaN 114520 35 0 15390 0.262 + 4877 FAFDEIVAL 9 40 512.7710165175781 1023.5274801019563 2 512.7698974609375 MULTI HCD FTMS 0 0 0 23558 74223.8984375 0.14443156136714602 12 -0.26067352294921875 2 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 21.74664581756881 0.17247014374749275 2 D{I|L}VA{I|L} 5 4 47.563 0 0 4.647 0 0 494.213182517775 0 494.213182517775 0 42.07834387816234 0 0 0 1.5 0 0 0 D{I|L}VA{I|L} 4.647 - 19 NaN NaN 108072.9 NaN 19100 4458 23558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23561 93.994 NaN 77601 35 0 8329.7 0.261 -1 ELFAMMFAMC 10 47 625.7567749023438 NaN 0 625.7567749023438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _ELFAMMFAMC(Carbamidomethyl (C))_ TSPAN18|p.I238M|1|0.18|ENSG00000157570|chr11:44929145-44929145|C/G|missense_variant 3.5964929083625545 0.337106189561315 2 W 1 -1 9.6041 0 0 0.76864 0 0 843.2408511212906 217.1621492975219 1060.4030004188126 0 0 0 0 0 0.5 0 0 0 W 0.76864 - 8 + NaN NaN 102447.8 NaN 19101 4458 23558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23562 93.997 NaN 125640 35 0 31899 0.264 -1 0 39 404.2444746751497 403.2371982085497 1 404.2464599609375 MULTI HCD FTMS 0 0 0 23558 93734.0625 0.7997532075223179 -4 0.0479736328125 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.76852 0 0 58.053739811868475 195.0944002740844 253.14814008595286 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.76852 - 9 + NaN NaN 103021.7 NaN 19102 4458 23558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23564 94.002 NaN 68192 35 0 9016.2 0.327 + 28124 TIMIEMLC 8 27 477.22988927901457 NaN 0 477.2298583984375 PEAK HCD FTMS 0 0 0 23563 116034.859375 0.3647009442150633 9 -0.19945526123046875 1 Unmodified _TIMIEMLC_ REV__ENST00000336787.5_1_15:55527092-55527146:-|nuORF 5.230669730166228 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103591.3 NaN 19103 4459 23563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23565 94.007 NaN 157970 35 0 10760 0.261 + 14458 LESWVLFDTW 10 56 648.3191442464066 1294.6237355596131 2 648.3172607421875 MULTI HCD FTMS 0 0 0 23563 66157.2890625 0.26116275926889637 11 -0.24515533447265625 2 Unmodified _LESWVLFDTW_ REV__ENST00000463758.1_1_1:1244676-1244778:+|nuORF 9.38312468134398 0.42334543440173333 2 Y{[DS]|[MA]|[CV]|TT}{I|L}[PS] 6 -1 23.473 0 0 1.8131 0 0 614.3051624982437 0 614.3051624982437 0 4.493559221610965 0 0 0 1 0 0.3807196863200844 0 Y{[DS]|[MA]|[CV]|TT}{I|L}[PS] 1.8131 - 64 NaN NaN 118754.3 NaN 19104 4459 23563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23567 94.011 NaN 1194000 35 0 325600 0.327 + 6126 FPEGLFYEF 9 60 574.7685982649667 1147.5226435967334 2 574.7684936523438 MULTI HCD FTMS 0 0 0 23566 825197.625 0.2525051114302113 23 -0.5530319213867188 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 65.23502041540118 0.010630085227462206 2 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 [{M(Oxidation (M))|F}E]P + + 71.235 13.512 3.621 6.2077 6.2077 64.253 0 0 0 0 48.047444008242906 0 0 0 2.5 0 1.2614393726401687 0 [{M(Oxidation (M))|F}E]PG{I|L}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 6.2077 - 159 + NaN NaN 278306.8 NaN 19105 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23568 94.016 NaN 465460 35 0 52310 0.261 + 4523 EYLDLFGNTF 10 63 609.7880706106451 1217.5615882880902 2 610.2896728515625 MULTI HCD FTMS 0 0 0 23566 153192.796875 0.6807491369942216 -1 0.00948333740234375 2 Unmodified _EYLDLFGNTF_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 117.76058876431921 4.161225987453182E-05 2 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}[NG]T{M(Oxidation (M))|F} 10 2 + 82.162 0 0 6.7481 6.7481 85.224 0 0 0 0.058057693759622 0.058057693759622 0.058057693759622 0.058057693759622 0 2.2059771852360797 2 1.6549471895720984 0.3252574989159953 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}[NG]T{M(Oxidation (M))|F};Y{I|L}ED{I|L}{M(Oxidation (M))|F}[NG]T{M(Oxidation (M))|F};Y{I|L}ED{M(Oxidation (M))|F}{I|L}[NG]T{M(Oxidation (M))|F};[Y{I|L}]ED{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[VG]T{M(Oxidation (M))|F};[Y{I|L}]ED{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]};[Y{I|L}]{I|L}[CS]{[ES]|[DT]|[{I|L}C]}RT{M(Oxidation (M))|F};YHHT{I|L}{[WN]|[YH]}T{M(Oxidation (M))|F};Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D{I|L}E[NG]T{M(Oxidation (M))|F};YHHTV[WQ]T{M(Oxidation (M))|F};[Y{I|L}]{I|L}[CS]{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]} 6.7481;6.7433;5.103;3.6457;3.3586;1.7301;1.618;1.5154;1.2682;1.0137 -;-;-;-;-;-;-;-;-;- 489 NaN NaN 160017.9 NaN 19106 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23569 94.019 NaN 395770 35 0 56427 0.261 -1 LKTQPLFSF 9 60 561.813093390506 1121.6116338478118 2 561.8129272460938 MULTI HCD FTMS 0 0 0 23566 139404.71875 0.4904203721607031 7 -0.16713714599609375 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LKTQPLFSF_ ENST00000495205.1_1_1:201104793-201114281:-|nuORF 20.453626601364224 0.18364154288633264 2 [RH]{I|L}{I|L}[RP]PS{M(Oxidation (M))|F} 9 -1 + 46.565 0 0 4.1516 4.1516 82.92 0 0 0 23.589030598430583 2.727562184969372 2.727562184969372 4.195925227640984 0 1.8494850021680094 0 0.4247425010840047 0 [RH]{I|L}{I|L}[RP]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TA][VP]{I|L}{I|L}Q{M(Oxidation (M))|F};[Q{I|L}][R{M(Oxidation (M))|F}][RK]Q{M(Oxidation (M))|F} 4.1516;3.7775;0.70368 -;-;- 255 + NaN NaN 166896.2 NaN 19107 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23570 94.023 NaN 232770 35 0 18915 0.261 + 14299 LDFKDFQML 9 57 578.7901030100302 1155.5656530868603 2 579.2870483398438 MULTI HCD FTMS 0 0 0 23566 54601.4453125 0.6847666957922569 -2 0.02500152587890625 4 Unmodified _LDFKDFQML_ REV__tr|U7SVV7|U7SVV7_FUSNUOxygen-independentcoproporphyrinogenIIIoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01354PE=4SV=1 9.38312468134398 0.279288223203164 2 [YT]V{M(Oxidation (M))|F}[WP][KC]{I|L} 9 -1 + 29.332 0 0 2.5383 2.5383 59.918 0 0 0 12.74227503252014 2.3764301679958812 2.3764301679958812 0 0 0 1.6989700043360187 0 0 [YT]V{M(Oxidation (M))|F}[WP][KC]{I|L};[YT]V[WP]{M(Oxidation (M))|F}[KC]{I|L};[YT]V{M(Oxidation (M))|F}[HK]{[QS]|[NT]}{M(Oxidation (M))|F};[YN]{I|L}QQ{M(Oxidation (M))|F}[KC]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[WP]{M(Oxidation (M))|F}[KC]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}[WP][KC]{I|L} 2.5383;2.5383;1.7568;1.4356;0.72367;0.72367 -;-;-;-;-;- 223 NaN NaN 128590.8 NaN 19108 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23571 94.026 NaN 112920 35 0 17937 0.261 + 26853 SYILWALYA 9 48 550.2934516234175 1098.5723503136348 2 550.2931518554688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _SYILWALYA_ REV__ENSG00000183307|ENST00000331437|TMEM121B 12.531546534597751 0.2520865569484384 2 {M(Oxidation (M))|F}K[MT] 4 -1 20.238 0 0 1.8422 0 0 573.3215701396099 0 573.3215701396099 0 7.918955525084373 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}K[MT] 1.8422 - 68 + NaN NaN 114768.1 NaN 19109 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23572 94.029 NaN 189710 35 0 30467 0.261 -1 0 41 506.7789097301395 1011.543266527079 2 506.7815246582031 MULTI HCD FTMS 0 0 0 23566 60157.65625 0.03869729963087056 -12 0.15686798095703125 6 NaN NaN 2 {I|L}{I|L}{I|L} 3 -1 35.445 0 0 3.5041 0 0 654.2853309344947 0 654.2853309344947 0 27.730012720637376 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L} 3.5041 - 30 NaN NaN 118341.9 NaN 19110 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23573 94.033 NaN 64489 35 0 8441.2 0.261 -1 YNICHLNYF 9 34 622.2817993164062 NaN 0 622.2817993164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _YNIC(Carbamidomethyl (C))HLNYF_ ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF 7.289230182591677 0.2599242500475609 2 {I|L} 1 -1 6.9897 0 0 0.56253 0 0 852.3582339337905 274.08295618228755 1126.4411901160781 0 0 0 0 0 0 0 0 0 {I|L} 0.56253 + + 4 + NaN NaN 92162.5 NaN 19111 4460 23566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23575 94.037 NaN 1015500 35 0 214190 0.327 + 26872 SYIPLFPQL 9 54 539.302385658988 1076.5902183847759 2 539.3026733398438 MULTI HCD FTMS 0 0 0 23574 379531.34375 0.8858650187125718 3 -0.05408477783203125 1 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 47.748688679222035 0.03472022231463587 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 40.92 0 0 3.8009 3.8009 88.411 0 0 0 8.952424927286842 33.47295930833134 8.952424927286842 21.748650278674045 0 2 0 0.3807196863200844 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P][QP]{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}P][KP] 3.8009;1.7808;0.77675 +;-;- + 87 NaN NaN 237801.2 NaN 19112 4461 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23576 94.042 NaN 193100 35 0 13747 0.261 + -1 YTVWTCTLI 9 57 578.7901030100302 1155.5656530868603 2 579.2890625 MULTI HCD FTMS 0 0 0 23574 48423.03515625 0.6072821258558623 -1 0.0257568359375 2 Carbamidomethyl (C) _YTVWTC(Carbamidomethyl (C))TLI_ REV__ENST00000517412.1_1_5:67522537-67522594:+|nuORF 7.289230182591677 0.29575926068275815 2 [YT]V{M(Oxidation (M))|F}[WP][KC]{I|L} 9 -1 + 26.321 0 0 2.2778 2.2778 59.811 0 0 0 7.420299789533402 2.3764301679958812 2.3764301679958812 0 0 0 1.6989700043360187 0 0 [YT]V{M(Oxidation (M))|F}[WP][KC]{I|L};[YT]V[WP]{M(Oxidation (M))|F}[KC]{I|L};[YT]V{M(Oxidation (M))|F}[HK]{[QS]|[NT]}{M(Oxidation (M))|F} 2.2778;2.2778;1.4963 -;-;- 70 NaN NaN 119030 NaN 19113 4461 23574 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23578 94.047 NaN 1613500 35 0 313780 0.326 + 29496 TYVPWPLML 9 74 568.2965043688281 1134.578455804456 2 568.2966918945312 MULTI HCD FTMS 0 0 0 23577 557925.1875 0.8419953778366683 2 -0.04462432861328125 1 Oxidation (M) _TYVPWPLM(Oxidation (M))L_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 97.07464715276575 0.004340583992084827 2 [YT]VPWP{I|L}{M(Oxidation (M))|F}{I|L} 9 0 + 100 0 0 8.814 8.814 96.55 0 0 0 27.342509624031237 16.478174818886373 16.478174818886373 25.79689690656103 0 2.5669015600442577 1.6989700043360187 0.75 0 + + [YT]VPWP{I|L}{M(Oxidation (M))|F}{I|L};[YT][WP]VP{I|L}{M(Oxidation (M))|F}{I|L};[WP][YT]VP{I|L}{M(Oxidation (M))|F}{I|L};[YT][WP]PV{I|L}{M(Oxidation (M))|F}{I|L};[WP][YT]PV{I|L}{M(Oxidation (M))|F}{I|L};[YT][WP]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{M(Oxidation (M))|F}AAPPY{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}QG[NS]{I|L}{M(Oxidation (M))|F}{I|L};[YT][WP]P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}V;[{I|L}T]AA[C(Carbamidomethyl (C))Q]V{I|L}{M(Oxidation (M))|F}{I|L} 8.814;6.5403;5.1558;5.017;3.6324;2.8033;2.2656;1.9141;1.8129;1.7175 +;-;-;-;-;-;-;-;-;- + 1262 NaN NaN 340252.9 NaN 19114 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23579 94.051 NaN 732370 35 0 34580 0.262 -1 0 106 451.93261201226846 1352.7760066370054 3 451.9327087402344 MULTI HCD FTMS 0 0 0 23577 481784.28125 0.7881769296537728 2 -0.04462432861328125 2 NaN NaN 2 N{[HG]|PP}N 4 -1 16.287 0 0 1.2039 0 0 912.513963767775 0 912.513963767775 0 6.637823436461346 0 0 0 0.8494850021680094 0 0 0 N{[HG]|PP}N 1.2039 - 92 NaN NaN 204898.8 NaN 19115 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23580 94.054 NaN 619020 35 0 49053 0.261 + 34497 YPFLLVGDLM 10 73 592.3073986493324 1182.6002443654647 2 592.8042602539062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 71.13359017698441 0.016242133362018647 2 A{I|L}G{I|L}VGD{I|L}{M(Oxidation (M))|F} 9 4 64.078 0 0 5.4184 0 0 279.1208668439469 0 279.1208668439469 0 37.63464331590079 0 0 0 1.8494850021680094 0 0 0 A{I|L}G{I|L}VGD{I|L}{M(Oxidation (M))|F} 5.4184 - 1608 NaN NaN 176868.5 NaN 19116 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23581 94.058 NaN 148480 35 0 15296 0.261 + 31554 VYGTIFLTF 9 49 530.7895517903393 NaN 0 530.7894897460938 PEAK HCD FTMS 0 0 0 23577 115890.5703125 0.6294052554557462 -3 0.04470062255859375 4 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 39.957323273324995 0.07841223356700552 2 T{I|L}AT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 6 46.631 0 0 4.401 0 0 165.08213694928776 211.10849939517814 376.19063634446593 0 0 0 0 0 1.4247425010840047 0 0.4247425010840047 0 T{I|L}AT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.401 - 72 + NaN NaN 111150.8 NaN 19117 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23582 94.067 NaN 208710 35 0 58173 0.261 + 22892 QYPPVNWAALL 11 45 636.3426085183871 1270.6706641035742 2 636.34326171875 MULTI HCD FTMS 0 0 0 23577 102275.4453125 0.9926868223657785 2 -0.04462432861328125 5 Unmodified _QYPPVNWAALL_ ENSG00000188352|ENST00000338382|FOCAD 29.081581746732265 0.20726811077697932 2 AA{I|L}{I|L} 4 7 41.938 0 0 3.3005 0 0 884.4159578007155 0 884.4159578007155 0 34.94850021680094 0 0 0 1 0 0 0 + AA{I|L}{I|L} 3.3005 + + 17 NaN NaN 114067.8 NaN 19118 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23583 94.07 NaN 115020 35 0 10381 0.261 + 30805 VPVDAGELFWY 11 53 648.3191442464066 1294.6237355596131 2 648.3194580078125 MULTI HCD FTMS 0 0 0 23577 44090.08984375 0.17405020192301346 14 -0.35759735107421875 6 Unmodified _VPVDAGELFWY_ REV__ENSG00000105492|ENST00000425629|SIGLEC6;REV__ENST00000489837.1_1_19:52032900-52035046:-|nuORF;REV__ENST00000496422.5_1_19:52032900-52035046:-|nuORF;REV__nc|ENSG00000105492|O43699-2|SIGLEC6;REV__nc|ENSG00000105492|O43699-3|SIGLEC6;REV__nc|ENSG00000105492|O43699-4|SIGLEC6;REV__nc|ENSG00000105492|O43699-5|SIGLEC6;REV__nc|ENSG00000105492|O43699-6|SIGLEC6 5.296884461304476 0.39569033063702824 2 QG 2 -1 17.959 0 0 1.3872 0 0 0 1106.5460909479127 1106.5460909479127 1.5051499783199063 0 0 0 0 0 0 0 0 QG 1.3872 - 14 + NaN NaN 107463 NaN 19119 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23584 94.074 NaN 153090 35 0 19389 0.263 + 5567 FLLALEPEL 9 33 522.8024304695925 NaN 0 522.8025512695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _FLLALEPEL_ ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF 10.823927491677226 0.2427956001690155 2 E 1 8 16.99 0 0 1.628 0 0 557.3581368863712 354.16596399478755 911.5241008811588 0 0 0 0 0 1 0 0 0 + E 1.628 + + 5 + NaN NaN 117673.9 NaN 19120 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23585 94.077 NaN 44216 35 0 4528.5 0.261 + 21391 PVITEIFSL 9 36 509.7945861816406 NaN 0 509.7945861816406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _PVITEIFSL_ ENSG00000141644|ENST00000269468|MBD1;ENST00000586884.1_1_18:47798982-47799349:-|nuORF;nc|ENSG00000141644|Q9UIS9-10|MBD1;nc|ENSG00000141644|Q9UIS9-11|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;nc|ENSG00000141644|Q9UIS9-4|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-7|MBD1;nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1 6.723162845929126 0.26266733336404485 2 S 1 8 11.237 0 0 1.1043 0 0 131.08869843574377 796.4227388971311 927.511437332875 0 0 0 0 0 0.4247425010840047 0 0 0 + S 1.1043 + + 1 + NaN NaN 92278 NaN 19121 4462 23577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23587 94.082 NaN 250480 35 0 44063 0.327 + 6611 FPLPTASSPFL 11 51 588.8184591400842 1175.6223653469683 2 588.8192749023438 MULTI HCD FTMS 0 0 0 23586 91889.3359375 0.160768657736468 10 -0.233917236328125 1 Unmodified _FPLPTASSPFL_ ENST00000311481.10_1_11:66043945-66044302:+|nuORF 24.020572477871973 0.2477903762158293 2 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 4 7 40.433 0 0 3.4393 0 0 653.3368397443375 0 653.3368397443375 0 33.44335023848103 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L} 3.4393 - 54 NaN NaN 122454.4 NaN 19122 4463 23586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23588 94.086 NaN 512870 35 0 65358 0.261 + 34498 YPFLLVGDLM 10 58 592.3073986493324 1182.6002443654647 2 592.3067016601562 MULTI HCD FTMS 0 0 0 23586 139830.625 0.1972127237814239 -8 0.12750244140625 2 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 88.90359156742426 0.0010865658313541904 2 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 8 6 73.085 0 0 6.18 0 0 278.130174705275 0 278.130174705275 0 52.19396287239803 0 0 0 2.110924374808178 0 1.110924374808178 0 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.18 - 1120 NaN NaN 173071.7 NaN 19123 4463 23586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23590 94.091 NaN 426620 35 0 25586 0.327 + 30945 VRLREISEQIK 11 83 457.60827744250093 1369.803002927703 3 457.60845947265625 MULTI HCD FTMS 0 0 0 23589 229124.265625 0.619834453285577 -1 0.0095367431640625 1 Unmodified _VRLREISEQIK_ REV__ENSG00000100336|ENST00000683024|APOL4;REV__nc|ENSG00000100336|Q9BPW4-3|APOL4;REV__nc|ENSG00000100336|Q9BPW4|APOL4 2.2527281973983926 0.4090409658946738 2 D 1 -1 7.7866 0 0 0.56845 0 0 61.05422963827238 1190.6748298568775 1251.7290594951498 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.56845 - 23 + NaN NaN 153797.2 NaN 19124 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23591 94.096 NaN 811660 35 0 116630 0.261 + 1301 AYNDNWFITF 10 73 645.7925078670975 1289.5704628009948 2 645.7930908203125 MULTI HCD FTMS 0 0 0 23589 193766.984375 0.020835128245505867 -8 0.12433624267578125 2 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 103.82355648334675 5.879419037132958E-05 2 NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6 4 83.153 0 0 6.4481 0 0 463.16783339668126 0 463.16783339668126 0 63.94524706148886 0 0 0 2.3807196863200843 0 0.3807196863200844 2.004432191740108 + NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6.4481 + + 294 NaN NaN 220382.3 NaN 19125 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23592 94.099 NaN 288110 35 0 56087 0.262 + 15459 LPDLLIFQM 9 50 553.3017704842172 1104.5889880352343 2 553.3018188476562 MULTI HCD FTMS 0 0 0 23589 85721.875 0.39333437960574646 6 -0.15583038330078125 3 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 49.93300154707207 0.03166451819912738 2 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 48.663 0 0 4.4055 4.4055 86.106 0 0 0 3.3402417527698844 9.852569596887776 3.3402417527698844 9.208187539523749 0 1.805462187404089 0 0.3494850021680094 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};MT{I|L}{I|L}[WD]{I|L}[{I|L}T];MT{I|L}[WD]{I|L}{I|L}[{I|L}T] 4.4055;3.5719;2.6312;2.1104 -;-;-;- 104 NaN NaN 124546.9 NaN 19126 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23593 94.103 NaN 176780 35 0 20680 0.261 -1 FPPMAPPTALL 11 56 585.8134146706268 NaN 0 585.8140258789062 PEAK HCD FTMS 0 0 0 23589 49322.80078125 0.47198174936484166 43 -1.0531997680664062 4 Oxidation (M) _FPPM(Oxidation (M))APPTALL_ ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL 13.90604991867851 0.30267268458145574 2 PE{[VA]|[{I|L}G]}{M(Oxidation (M))|F}Y 6 -1 14.944 0 0 1.2777 0 0 147.1790208430471 313.07953821353755 460.25855905658466 0 0 0 0 0 0 0 0.6694451763165201 0 PE{[VA]|[{I|L}G]}{M(Oxidation (M))|F}Y 1.2777 - 70 + NaN NaN 124815.1 NaN 19127 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23594 94.106 NaN 86596 35 0 14701 0.262 -1 IKPILQVI 8 25 483.3231671108623 964.6317812885246 2 483.32354736328125 MULTI HCD FTMS 0 0 0 23589 29790.31640625 0.49684669380554153 -2 0.04462432861328125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IKPILQVI_ ENSG00000132383|ENST00000254719|RPA1;RPA1|p.R31H|2|0.41|ENSG00000132383|chr17:1843927-1843927|G/A|missense_variant 5.230669730166228 0.5342319408533849 2 V{I|L} 2 -1 25.969 0 0 2.6921 0 0 734.4673133939414 0 734.4673133939414 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.6921 + + 5 NaN NaN 100343.6 NaN 19128 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23595 94.109 NaN 268250 35 0 40275 0.261 + 29930 VFEEAFFSF 9 50 561.7607710328921 1121.506989132584 2 561.7787475585938 MULTI HCD FTMS 0 0 0 23589 26331.634765625 0.13754737202004774 5 -0.13298797607421875 6 Unmodified _VFEEAFFSF_ ENSG00000004939|ENST00000262418|SLC4A1;ENSG00000164889|ENST00000413384|SLC4A2;nc|ENSG00000004939|P02730-2|SLC4A1;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;SLC4A1|p.E480K|1|0.33|ENSG00000004939|chr17:44257538-44257538|C/T|missense_variant;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant 11.640296217721598 0.25978676193971967 2 M[HM]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PS{M(Oxidation (M))|F} 9 6 + 27.63 0 0 2.4636 2.4636 80.327 0 0 0 5.642492736872601 9.926609503452188 5.642492736872601 0.9691001300805624 0 0 0 0.3807196863200844 0 M[HM]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PS{M(Oxidation (M))|F};M[HM]{I|L}[{I|L}P]{M(Oxidation (M))|F}S{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}{I|L}[C(Carbamidomethyl (C))R]Q{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))R]{I|L}Q{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}{I|L}[C(Carbamidomethyl (C))R][AG]{M(Oxidation (M))|F};[HD]{M(Oxidation (M))|F}[C(Carbamidomethyl (C))R]{I|L}[AG]{M(Oxidation (M))|F} 2.4636;2.3772;1.7285;1.7285;0.90265;0.90265 -;-;-;-;-;- 144 + NaN NaN 137827.9 NaN 19129 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23596 94.113 NaN 361620 35 0 53161 0.261 + 17727 MCSFFLFLF 9 66 577.7739485512888 1153.5333441693774 2 577.774169921875 MULTI HCD FTMS 0 0 0 23589 42643.6796875 0.5177621528560012 -1 0.0095367431640625 7 Unmodified _MCSFFLFLF_ REV__ENST00000242261.5_1_7:19155415-19155475:-|nuORF 24.67388899826682 0.14717941214954053 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 -1 33.94 0 0 2.9423 0 0 728.3023425944053 0 728.3023425944053 0 11.500065532235126 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.9423 + + 140 + NaN NaN 151088.7 NaN 19130 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23597 94.116 NaN 114310 35 0 14118 0.261 + -1 SYTLYMPELI 10 33 623.305406249245 1244.59625956529 2 623.3055419921875 MULTI HCD FTMS 0 0 0 23589 22523.521484375 0.5035110728361067 -1 0.0095367431640625 8 Oxidation (M) _SYTLYM(Oxidation (M))PELI_ REV__ENST00000545737.5_1_12:28459732-28460593:+|nuORF 10.073929032068715 0.4168838835836452 2 {I|L}{I|L} 2 -1 25.969 0 0 2.0865 0 0 1000.416212880708 0 1000.416212880708 0 17.01667520279372 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.0865 + + 4 NaN NaN 105753.9 NaN 19131 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23598 94.119 NaN 119350 35 0 8566.9 0.261 + -1 LCSACWTALCL 11 61 620.7788243933148 NaN 0 620.7794799804688 PEAK HCD FTMS 0 0 0 23589 24663.46875 0.6793303754385923 -1 0.0095367431640625 9 Carbamidomethyl (C) _LCSACWTALC(Carbamidomethyl (C))L_ REV__ENST00000308660.5_1_5:126214013-126214073:-|nuORF 6.2057823575117 0.3245161260919307 2 S{I|L}AV 4 -1 15.037 0 0 1.2131 0 0 203.02034916785402 663.2771090143186 866.2974581821727 0 0 0 0 0 0 0 0 0 S{I|L}AV 1.2131 - 49 + NaN NaN 127305 NaN 19132 4464 23589 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23600 94.124 NaN 678760 35 0 64656 0.327 + 11189 IYIWDLNNF 9 79 599.3004998777495 1196.586446822299 2 599.3009643554688 MULTI HCD FTMS 0 0 0 23599 306751.25 0.055556803226573845 22 -0.5454483032226562 1 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 160.51597146486608 8.986712039288196E-09 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 103.62 0 0 8.66 8.66 92.963 0 0 0 3.1516688424750328 3.1516688424750328 3.1516688424750328 9.208187539523749 0 2.6989700043360187 1.5228787452803376 0.3054621874040891 0.6747425010840047 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]V[WE]{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]V[WE]{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]V[WE]{I|L}GGN{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}DW{I|L}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}GG{I|L}DW{I|L}K{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}N{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}[R{I|L}]{M(Oxidation (M))|F} 8.66;7.8905;7.6271;6.5607;5.9843;5.2148;4.9227;2.0258;0.72919;0.65448 +;-;-;-;-;-;-;-;-;- + 1426 NaN NaN 201693.7 NaN 19133 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23601 94.128 NaN 177520 35 0 18712 0.261 + -1 FPCCFLTWP 9 61 585.7594676403127 1169.5043823474252 2 585.7601318359375 MULTI HCD FTMS 0 0 0 23599 85361.75 0.1661223167491944 29 -0.7100067138671875 2 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))CFLTWP_ REV__ENST00000537973.5_1_12:133758174-133764682:+|nuORF;REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF 12.531546534597751 0.2520865569484384 2 A{[ET]|[MV]}EPE 6 -1 33.689 0 0 2.8807 0 0 495.211717674025 0 495.211717674025 0 11.03794667124717 0 0 0 0.7742275032520141 0 0.3807196863200844 0 A{[ET]|[MV]}EPE 2.8807 - 249 NaN NaN 115646.6 NaN 19134 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23602 94.132 NaN 231270 35 0 48916 0.261 + 30414 VLPDMFFSF 9 58 559.7650715948189 NaN 0 559.7655639648438 PEAK HCD FTMS 0 0 0 23599 68571.3359375 0.5472146894994204 7 -0.17226409912109375 3 Oxidation (M) _VLPDM(Oxidation (M))FFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 64.23631603340823 0.017424957411157443 2 S{M(Oxidation (M))|F} 2 7 31.211 0 0 2.7929 0 0 165.0787068097672 715.3145459051283 880.3932527148954 0 0 0 0 0 1.5 0 0.6747425010840047 0 + S{M(Oxidation (M))|F} 2.7929 + + 102 NaN NaN 132421.7 NaN 19135 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23603 94.135 NaN 108830 35 0 6290.9 0.263 + 14850 LKERHKELEK 10 53 437.25747185220166 1308.750586156805 3 437.2579345703125 MULTI HCD FTMS 0 0 0 23599 47702.93359375 0.3981071967585885 9 -0.22791290283203125 4 Unmodified _LKERHKELEK_ REV__ENSG00000234545|ENST00000445716|FAM133B;REV__ENST00000332869.5_1_10:60475484-60475616:+|nuORF;REV__ENST00000481407.5_1_7:92207439-92210911:-|nuORF;REV__nc|ENSG00000234545|Q5BKY9-2|FAM133B 1.5922808571145555 0.4668755089467872 2 K 1 -1 13.495 0 0 1.0311 0 0 1162.647800977897 0 1162.647800977897 0 7.653631197717985 0 0 0 0 0 0 0 K 1.0311 + + 5 + NaN NaN 102238.2 NaN 19136 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23604 94.139 NaN 62224 35 0 5531.5 0.261 -1 IMFLIDFYQ 9 32 603.2980961393025 1204.581639345405 2 603.2981567382812 MULTI HCD FTMS 0 0 0 23599 46194.46484375 0.6361129098003744 -10 0.1696014404296875 5 Oxidation (M) _IM(Oxidation (M))FLIDFYQ_ ENST00000274496.9_1_5:143539608-143539680:-|nuORF 8.155526934196011 0.2891920862272901 2 YP{M(Oxidation (M))|F}{I|L}{I|L} 5 -1 33.733 0 0 2.8004 0 0 0 568.2037447565061 568.2037447565061 12.764209843288903 0 0 0 0 0 0 0 0 YP{M(Oxidation (M))|F}{I|L}{I|L} 2.8004 - 18 + NaN NaN 96107.2 NaN 19137 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23605 94.142 NaN 155690 35 0 6680.3 0.261 -1 VFMIDRDNSV 10 72 606.2903524184451 1210.56615190369 2 606.2908935546875 MULTI HCD FTMS 0 0 0 23599 36008.42578125 0.06799324103522394 22 -0.5454483032226562 6 Oxidation (M) _VFM(Oxidation (M))IDRDNSV_ ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT 8.745405648335112 0.42901288225909884 2 {I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 4 -1 21.682 0 0 1.7911 0 0 704.3144398419937 0 704.3144398419937 0 16.197887582883936 0 0 0 0.8494850021680094 0 0 0 {I|L}{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F} 1.7911 - 15 NaN NaN 112235.3 NaN 19138 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23606 94.145 NaN 63843 35 0 6006.5 0.261 + 3439 EFLWLVLGW 9 43 581.8177200338371 NaN 0 581.7581176757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EFLWLVLGW_ REV__ENSG00000101417|ENST00000409299|PXMP4;REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF 4.75600775471527 0.27219989241163056 2 {I|L} 1 -1 9.732 0 0 0.83779 0 0 276.1135761987303 769.4041484644882 1045.5177246632186 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.83779 + + 7 + NaN NaN 88277.4 NaN 19139 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23607 94.149 NaN 91245 35 0 15865 0.261 + 15652 LPEFVEPFL 9 36 545.7943519858289 NaN 0 545.7947387695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LPEFVEPFL_ ENSG00000174231|ENST00000304992|PRPF8 10.823927491677226 0.2427956001690155 2 E 1 8 16.99 0 0 1.5593 0 0 585.317053725761 372.1917818658813 957.5088355916423 0 0 0 0 0 1 0 0 0 + E 1.5593 + + 3 + NaN NaN 99262.9 NaN 19140 4465 23599 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23609 94.157 NaN 682400 35 0 186770 0.264 + 6127 FPEGLFYEF 9 60 574.7685982649667 1147.5226435967334 2 574.7686767578125 MULTI HCD FTMS 0 0 0 23608 382774.1875 0.11712641425415651 29 -0.7133941650390625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 58.678817012210395 0.019429721296335044 2 [{M(Oxidation (M))|F}E]P{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 61.36 0 0 5.3472 5.3472 92.321 0 0 0 0.13051521653522968 48.288493772929044 0.13051521653522968 61.36046240493748 0 2.4247425010840047 0 0 0 [{M(Oxidation (M))|F}E]P{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5.3472 - 108 NaN NaN 202894.2 NaN 19141 4466 23608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23610 94.161 NaN 435600 35 0 54239 0.261 + 4524 EYLDLFGNTF 10 71 609.7880706106451 1217.5615882880902 2 609.7877807617188 MULTI HCD FTMS 0 0 0 23608 147387.203125 0.5921456301519294 1 -0.0252838134765625 2 Unmodified _EYLDLFGNTF_ ENSG00000165501|ENST00000298288|LRR1;ENST00000540712.1_1_14:50068361-50081211:+|nuORF 107.09958533191995 5.475541806694616E-05 2 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}[NG]T{M(Oxidation (M))|F} 10 2 + 85.269 0 0 7.0033 7.0033 95.517 0 0 0 16.433400605621742 49.52943390796005 16.433400605621742 85.26933838679369 0 2.3494850021680094 1.154901959985743 2.055462187404089 0.3807196863200844 [Y{I|L}]ED{I|L}{M(Oxidation (M))|F}[NG]T{M(Oxidation (M))|F} 7.0033 - 154 NaN NaN 162098.9 NaN 19142 4466 23608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23611 94.164 NaN 142380 35 0 5858.6 0.261 + 23265 RGRRGLRPSR 10 73 605.8718204675106 1209.729088001821 2 605.8720092773438 MULTI HCD FTMS 0 0 0 23608 133448 0.7456405504349911 5 -0.116668701171875 3 Unmodified _RGRRGLRPSR_ REV__ENST00000440884.7_1_14:103852062-103852221:+|nuORF 2.735195868890462 0.4608258780945842 2 D 1 -1 9.732 0 0 0.80448 0 0 61.05230696149676 1030.6007784479127 1091.6530854094094 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.80448 - 23 + NaN NaN 116052.7 NaN 19143 4466 23608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23612 94.167 NaN 173270 35 0 21226 0.261 + 7671 FYLDQVALSW 10 50 621.31312547958 1240.6116980259599 2 621.3138427734375 MULTI HCD FTMS 0 0 0 23608 50795.7421875 0.4193978880761915 -3 0.0715484619140625 4 Unmodified _FYLDQVALSW_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 40.72490554402381 0.1391161235525472 2 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW 11 3 + 68.245 0 0 5.5009 5.5009 83.357 0 0 0 0 0 0 0.5809231700978472 0 1 0 0.3252574989159953 0 {[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;[YQ]{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YQ]{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YQ]{I|L}[PS][{M(Oxidation (M))|F}T]{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}[{M(Oxidation (M))|F}T][PS]{I|L}SW 5.5009;5.4541;5.4541;5.2387;2.752;2.5367 -;-;-;-;-;- 184 + NaN NaN 128521.6 NaN 19144 4466 23608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23613 94.171 NaN 99748 35 0 9671.5 0.263 + 32766 WRNRQKNKRR 10 48 481.2836647341653 1440.829164802696 3 481.2834777832031 MULTI HCD FTMS 0 0 0 23608 65748.9140625 0.5535276162290717 -4 0.10663604736328125 5 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 2 C(Carbamidomethyl (C)) 1 10 0.48455 0 0 0.03363 0 0 1026.583572616952 251.19208704166252 1277.7756596586146 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.03363 - 1 + NaN NaN 95072.2 NaN 19145 4466 23608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23614 94.174 NaN 192340 35 0 63372 0.261 + 8259 GTHRMVCDF 9 49 533.2345296167447 1064.4545063002893 2 533.2349853515625 MULTI HCD FTMS 0 0 0 23608 23777.51171875 0.13998429666471315 -6 0.14185333251953125 6 Unmodified _GTHRMVCDF_ ENST00000428429.1_1_9:116352200-116352278:-|nuORF 1.6526216038709556 0.33848895094777925 2 M 1 8 5.4846 0 0 0.51525 0 0 61.01434034676294 869.3651938647819 930.3795342115449 0 0 0 0 0 0 0 0 0 + M 0.51525 + + 3 + NaN NaN 124790.4 NaN 19146 4466 23608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23616 94.179 NaN 906180 35 0 127480 0.327 + 31965 VYPGLAVFF 9 59 506.7789097301395 1011.543266527079 2 506.779052734375 MULTI HCD FTMS 0 0 0 23615 394445.71875 0.25373302615297366 -5 0.13191986083984375 1 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 79.93452657146344 0.0058735632865073864 2 [YV][PG]{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 75.34 0 0 7.448 7.448 95.81 0 0 0 20.482099529372277 57.62960296723602 20.482099529372277 55 0 2.4247425010840047 1.5228787452803376 0 0 + + [YV][PG]{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][HV][DG]{I|L}{I|L}{I|L} 7.448;2.0108 +;- + 150 NaN NaN 223672 NaN 19147 4467 23615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23617 94.183 NaN 338950 35 0 20254 0.261 + 14408 LEKVKHAAAAR 11 89 597.3587604930277 1192.7029680528553 2 597.3588256835938 MULTI HCD FTMS 0 0 0 23615 203249.328125 0.7322016105336511 2 -0.04569244384765625 2 Unmodified _LEKVKHAAAAR_ REV__ENSG00000137713|ENST00000527614|PPP2R1B;REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF;REV__nc|ENSG00000137713|P30154-2|PPP2R1B;REV__nc|ENSG00000137713|P30154-3|PPP2R1B;REV__nc|ENSG00000137713|P30154-4|PPP2R1B;REV__nc|ENSG00000137713|P30154-5|PPP2R1B 7.101721422024254 0.3877749288398915 2 EDPV 4 -1 13.532 0 0 1.1346 0 0 131.23326770837008 618.2518404596311 749.4851081680013 0 0 0 0 0 0 0 0 0 EDPV 1.1346 - 254 + NaN NaN 147176.2 NaN 19148 4467 23615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23618 94.187 NaN 362940 35 0 69273 0.261 + 26873 SYIPLFPQL 9 49 539.302385658988 1076.5902183847759 2 539.3026733398438 MULTI HCD FTMS 0 0 0 23615 133732.96875 0.3121464427513611 9 -0.225677490234375 3 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 32.78568957990786 0.09846250359632436 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L} 9 0 + 34.6 0 0 3.2138 3.2138 83.558 0 0 0 6.438937347570082 17.944087325889985 6.438937347570082 8.010299956639816 0 1.9247425010840047 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P]{M(Oxidation (M))|F}[QP]{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}P][QP]{I|L}{M(Oxidation (M))|F} 3.2138;2.4698 +;- + 126 NaN NaN 151288.8 NaN 19149 4467 23615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23619 94.19 NaN 116170 35 0 5814.5 0.261 + 11092 IYHLFTDMVT 10 65 620.3063185975404 NaN 0 620.3065795898438 PEAK HCD FTMS 0 0 0 23615 78284.375 0.9685577339824151 -1 0.0252838134765625 4 Unmodified _IYHLFTDMVT_ REV__TAAR1|p.P275T|1|0.19|ENSG00000146399|chr6:132645181-132645181|G/T|missense_variant 6.723162845929126 0.3344301934401713 2 NS 2 -1 10.573 0 0 0.85364 0 0 88.04045296216971 946.4674166315061 1034.5078695936759 0 0 0 0 0 0.5 0 0 0 NS 0.85364 - 38 + NaN NaN 110825.9 NaN 19150 4467 23615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23620 94.193 NaN 83183 35 0 8083.8 0.261 + 6093 FPEEVIATIF 10 36 583.3103290180842 1164.6061051029683 2 583.3107299804688 MULTI HCD FTMS 0 0 0 23615 21616.025390625 0.04947245703979237 -18 0.31133270263671875 5 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 22.736283301280096 0.29844449404982915 2 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 46.788 0 0 4.0175 0 0 601.27250868965 0 601.27250868965 0 30.590044264526416 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 4.0175 + + 28 NaN NaN 101489 NaN 19151 4467 23615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23621 94.197 NaN 100940 35 0 10635 0.261 + 4878 FAFDEIVAL 9 44 512.7710165175781 1023.5274801019563 2 512.7715454101562 MULTI HCD FTMS 0 0 0 23615 15203.1591796875 0.02958367943829445 21 -0.51361083984375 6 Unmodified _FAFDEIVAL_ ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1 16.942295170755138 0.21397866736869717 2 VA{I|L} 3 6 30.93 0 0 3.0219 0 0 722.3272572248062 0 722.3272572248062 0 26.32576888900239 0 0 0 0.9247425010840047 0 0 0 + VA{I|L} 3.0219 + + 14 NaN NaN 104619.7 NaN 19152 4467 23615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23623 94.202 NaN 776380 35 0 40994 0.327 -1 0 103 451.93261201226846 1352.7760066370054 3 451.9327697753906 MULTI HCD FTMS 0 0 0 23622 517785.59375 0.8470734214117343 8 -0.20284271240234375 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 10.837 0 0 0.80113 0 0 1187.7298163067303 0 1187.7298163067303 0 1.858055349748442 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.80113 - 78 + NaN NaN 206655.1 NaN 19153 4468 23622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23624 94.206 NaN 163650 35 0 18102 0.261 + 31555 VYGTIFLTF 9 43 530.7895517903393 NaN 0 530.7894287109375 PEAK HCD FTMS 0 0 0 23622 86634.8515625 0.470516546186886 3 -0.06855010986328125 2 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 64.23631603340823 0.017424957411157443 2 T{I|L}[TA]{M(Oxidation (M))|F}V 6 6 31.643 0 0 2.9864 0 0 165.07925861976895 259.10825525455317 424.1875138743221 0 0 0 0 0 1.5 0 0.4247425010840047 0 T{I|L}[TA]{M(Oxidation (M))|F}V 2.9864 - 73 + NaN NaN 132013.8 NaN 19154 4468 23622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23625 94.21 NaN 252490 35 0 83549 0.261 + 28421 TPFLYDLVM 9 51 549.780947775061 1097.547342616922 2 549.7810668945312 MULTI HCD FTMS 0 0 0 23622 99573.078125 0.5930864927360673 -3 0.07756805419921875 3 Unmodified _TPFLYDLVM_ ENSG00000102054|ENST00000380087|RBBP7;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-2|RBBP4;nc|ENSG00000162521|Q09028-3|RBBP4 15.847184025352803 0.2234401846867398 2 NVM 3 7 34.253 0 0 3.1208 0 0 735.3921986310562 0 735.3921986310562 0 14.431890546242343 0 0 0 0.5 0 0 0.3054621874040891 NVM 3.1208 - 66 NaN NaN 139896.9 NaN 19155 4468 23622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23626 94.213 NaN 440340 35 0 48259 0.262 + -1 AYLMCLFCMF 10 78 438.85021654934604 1313.5288202482382 3 438.85028076171875 MULTI HCD FTMS 0 0 0 23622 64692.66015625 0.383170517362024 -4 0.11013031005859375 4 Carbamidomethyl (C),Oxidation (M) _AYLM(Oxidation (M))C(Carbamidomethyl (C))LFCMF_ REV__nc|ENSG00000139880|Q86UP0-3|CDH24 2.0860074813731053 0.46426213543441425 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y 5 -1 18.269 0 0 1.3909 0 0 0 728.267025412797 728.267025412797 1.8158192561431008 0 0 0 0 0 2 0 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[QG]|[NA]}Y 1.3909 - 41 NaN NaN 157584.2 NaN 19156 4468 23622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23627 94.216 NaN 63385 35 0 8296.1 0.261 + -1 QLLKMLKNLWR 11 44 486.9589753050584 1457.8550965153752 3 486.95904541015625 MULTI HCD FTMS 0 0 0 23622 21356.119140625 0.3441324714190541 -9 0.19945526123046875 5 Oxidation (M) _QLLKM(Oxidation (M))LKNLWR_ REV__ENSG00000068878|ENST00000404125|PSME4 0.09484139111097674 0.41850472438158626 2 T 1 -1 1.9897 0 0 0.13648 0 0 888.5597606772877 465.2349947565063 1353.794755433794 0 0 0 0 0 0 0 0 0 T 0.13648 - 3 + NaN NaN 102668.5 NaN 19157 4468 23622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23628 94.22 NaN 74803 35 0 9983.5 0.261 + 11980 KFTVQRTDP 9 35 546.2953532277578 NaN 0 546.2955322265625 PEAK HCD FTMS 0 0 0 23622 15673.2236328125 0.7160862099320928 1 -0.022857666015625 6 Unmodified _KFTVQRTDP_ ENSG00000163531|ENST00000339876|NFASC;ENST00000404977.6_1_1:204951067-204978869:+|nuORF;ENST00000492085.1_1_1:204956601-204966704:+|nuORF;ENST00000495396.5_1_1:204956439-204985664:+|nuORF;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856|NFASC;NFASC|p.V893M|1|0.26|ENSG00000163531|chr1:204988716-204988716|G/A|missense_variant 3.5964929083625545 0.27781873954207675 2 E 1 9 6.9897 0 0 0.64092 0 0 376.2214581524284 582.2938326471311 958.5152907995596 0 0 0 0 0 0 0 0 0 E 0.64092 - 4 + NaN NaN 105283.3 NaN 19158 4468 23622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23630 94.224 NaN 1059200 35 0 160830 0.327 + 34499 YPFLLVGDLM 10 54 592.3073986493324 1182.6002443654647 2 592.307373046875 MULTI HCD FTMS 0 0 0 23629 479789.5 0.6766800487141317 -2 0.04569244384765625 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 154.46347324262513 9.480379022298538E-08 2 T{I|L}E{I|L}{I|L}VGD{I|L}{M(Oxidation (M))|F} 10 3 102.25 0 0 8.6461 0 0 63.99720639507752 0 63.99720639507752 0 71.3282194246704 0 0 0 2.2302046884880937 0 2.385151878060192 0 T{I|L}E{I|L}{I|L}VGD{I|L}{M(Oxidation (M))|F} 8.6461 - 853 + NaN NaN 242608.5 NaN 19159 4469 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23631 94.229 NaN 468440 35 0 24045 0.263 + 30946 VRLREISEQIK 11 84 457.60827744250093 1369.803002927703 3 457.6082458496094 MULTI HCD FTMS 0 0 0 23629 237690.453125 0.6430079837334358 4 -0.09139251708984375 2 Unmodified _VRLREISEQIK_ REV__ENSG00000100336|ENST00000683024|APOL4;REV__nc|ENSG00000100336|Q9BPW4-3|APOL4;REV__nc|ENSG00000100336|Q9BPW4|APOL4 2.2527281973983926 0.4090409658946738 2 A 1 -1 8.9794 0 0 0.65552 0 0 105.08039623524435 1190.674605670711 1295.7550019059552 0 0 0 0 0 0.5 0 0 0 A 0.65552 - 50 + NaN NaN 162431.5 NaN 19160 4469 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23632 94.232 NaN 112300 35 0 30210 0.261 + 1843 CTVIYGLHPNW 11 38 434.8822278377371 NaN 0 434.8822937011719 PEAK HCD FTMS 0 0 0 23629 63459.7890625 0.5999097940314284 19 -0.46791839599609375 3 Unmodified _CTVIYGLHPNW_ REV__CKB|p.L281V|1|0.24|ENSG00000166165|chr14:103520248-103520248|G/C|missense_variant 1.214830529360525 0.33867401910978034 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109532.2 NaN 19161 4469 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23633 94.236 NaN 123650 35 0 13731 0.261 -1 KPRKLPMVM 9 68 558.3243192687174 1114.6340856042348 2 558.3245849609375 MULTI HCD FTMS 0 0 0 23629 46577.859375 0.7726427441959289 2 -0.04569244384765625 4 Oxidation (M) _KPRKLPMVM(Oxidation (M))_ SETBP1|p.P500L|1|0.3|ENSG00000152217|chr18:44950839-44950839|C/T|missense_variant 2.302733041254933 0.33356062215410776 2 {I|L}{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.6112 0 0 836.5048569438817 0 836.5048569438817 0 10.969100130080562 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6112 - 79 + NaN NaN 108984.6 NaN 19162 4469 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23634 94.239 NaN 85361 35 0 7855.3 0.261 + 6612 FPLPTASSPFL 11 36 588.8184591400842 1175.6223653469683 2 588.8193969726562 MULTI HCD FTMS 0 0 0 23629 27660.99609375 0.04839540049207217 16 -0.3959808349609375 5 Unmodified _FPLPTASSPFL_ ENST00000311481.10_1_11:66043945-66044302:+|nuORF 8.745405648335112 0.3805662881914433 2 P{M(Oxidation (M))|F}{I|L} 3 8 26.682 0 0 2.2696 0 0 800.4047276434737 0 800.4047276434737 0 21.197887582883936 0 0 0 0.5 0 0 0 + P{M(Oxidation (M))|F}{I|L} 2.2696 + + 11 NaN NaN 105545.2 NaN 19163 4469 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23635 94.242 NaN 103180 35 0 12579 0.261 -1 FCLSPLTHALL 11 53 636.3426085183871 1270.6706641035742 2 636.343994140625 MULTI HCD FTMS 0 0 0 23629 33545.8515625 0.32559647811244735 9 -0.22906494140625 6 Carbamidomethyl (C) _FC(Carbamidomethyl (C))LSPLTHALL_ ENST00000433206.6_1_17:37077548-37077713:+|nuORF 4.897010918128616 0.3974440401582579 2 A{I|L}{I|L} 3 -1 22.703 0 0 1.7867 0 0 955.4482289044937 0 955.4482289044937 0 13.239087409443187 0 0 0 0 0 0 0 A{I|L}{I|L} 1.7867 + + 9 NaN NaN 110443.8 NaN 19164 4469 23629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23637 94.247 NaN 12177000 35 0 1904800 0.327 + 1302 AYNDNWFITF 10 94 645.7925078670975 1289.5704628009948 2 645.7927856445312 MULTI HCD FTMS 0 0 0 23636 7475327 0.8037973921329581 -2 0.0457000732421875 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 187.1423235319798 2.3722378751884736E-16 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 10 0 + 113.64 0 0 8.8125 8.8125 92.474 0 0 0 15.764837301042718 80.20401463239605 15.764837301042718 9.164539485499262 0 2.9947026752325154 1.3010299956639813 0.5866968715561641 2.048455006504028 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[VG][SG]{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[VG][SG]{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[VG][YQ]{I|L}T{M(Oxidation (M))|F} 8.8125;8.1018;8.1018;7.3951;6.6844;6.6844;6.4058;5.8054;4.9884;4.9732 +;-;-;-;-;-;-;-;-;- + 3398 NaN NaN 702775 NaN 19165 4470 23636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23638 94.252 NaN 204440 35 0 32862 0.262 + 15460 LPDLLIFQM 9 60 553.3017704842172 1104.5889880352343 2 553.3019409179688 MULTI HCD FTMS 0 0 0 23636 68898.171875 0.31613890492273083 12 -0.2911834716796875 2 Oxidation (M) _LPDLLIFQM(Oxidation (M))_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 43.85829265575387 0.04763305254408404 2 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 9 2 + 44.777 0 0 4.0537 4.0537 83.642 0 0 0 1.800442355934905 1.6552142918489068 1.6552142918489068 6.426426839045526 0 1.3807196863200843 0 0.28872548999643577 0 [DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F};MT{I|L}[WD]{I|L}{I|L}[{I|L}T];[DP]{I|L}{I|L}{I|L}{I|L}{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F};MT{[RE]|[WV]}E{I|L}{I|L}[{I|L}T] 4.0537;3.4719;3.2201;3.1994 -;-;-;- 136 NaN NaN 123026.5 NaN 19166 4470 23636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23639 94.255 NaN 371330 35 0 81980 0.261 + 7153 FSFLCMFFI 9 63 577.7739485512888 1153.5333441693774 2 578.2754516601562 MULTI HCD FTMS 0 0 0 23636 21046.310546875 0.40625500951950083 1 -0.02285003662109375 3 Unmodified _FSFLCMFFI_ REV__ENSG00000204267|ENST00000374897|TAP2;REV__nc|ENSG00000204267|Q03519-2|TAP2 34.10243960390752 0.09241788333544565 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[HQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 -1 + 63.564 0 0 5.5104 5.5104 89.034 0 0 0 17.10164323409387 30.28788056196135 17.10164323409387 11.604705826628184 0 1 1.5228787452803376 0.7059771852360797 0.6203715150305281 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}ND[HQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGD[HQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[WM][YT]{M(Oxidation (M))|F}{I|L};{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.5104;4.5044;1.1635;0.88294 -;-;-;- 422 NaN NaN 149807.9 NaN 19167 4470 23636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23640 94.259 NaN 164870 35 0 22227 0.262 + 21025 PLPVKSIVL 9 32 483.3231671108623 964.6317812885246 2 483.32305908203125 MULTI HCD FTMS 0 0 0 23636 53980.56640625 0.9002947663580019 4 -0.104644775390625 4 Unmodified _PLPVKSIVL_ ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3 10.823927491677226 0.26684000660059787 2 V{I|L} 2 7 20.701 0 0 2.146 0 0 734.4689218257183 0 734.4689218257183 0 9.731975075880328 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 2.146 + + 22 NaN NaN 112043.5 NaN 19168 4470 23636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23641 94.262 NaN 100130 35 0 6251.9 0.261 + 28300 TLTLFILGT 9 35 489.7971185555854 NaN 0 489.796875 PEAK HCD FTMS 0 0 0 23636 19424.70703125 0.9768630941909774 1 -0.02285003662109375 5 Unmodified _TLTLFILGT_ REV__nc|ENSG00000180953|Q9HBF5|ST20 6.723162845929126 0.26266733336404485 2 {I|L} 1 -1 5.3786 0 0 0.5502 0 0 575.3339394043365 286.14020715885005 861.4741465631867 0 0 0 0 0 0.5 0 0 0 {I|L} 0.5502 + + 4 + NaN NaN 105488.9 NaN 19169 4470 23636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23642 94.265 NaN 157540 35 0 18096 0.261 + 3987 ERFPQAFFCM 10 55 638.2834834925336 NaN 0 638.2859497070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _ERFPQAFFCM_ ENSG00000102057|ENST00000218176|KCND1 3.2813086475875832 0.33737594360511275 2 T{I|L}{M(Oxidation (M))|F} 3 9 20.445 0 0 1.6041 0 0 166.0840022557964 744.2421969049436 910.3261991607401 0 0 0 0 0 0 0 0.4247425010840047 0 T{I|L}{M(Oxidation (M))|F} 1.6041 - 12 + NaN NaN 116107.5 NaN 19170 4470 23636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23644 94.27 NaN 952190 35 0 245000 0.327 + -1 LPYGVAVGCV 10 66 517.7700834893515 1033.5256140455028 2 517.7700805664062 MULTI HCD FTMS 0 0 0 23643 273775.21875 0.6609720418737013 -1 0.02285003662109375 1 Carbamidomethyl (C) _LPYGVAVGC(Carbamidomethyl (C))V_ REV__ENSG00000140107|ENST00000361529|SLC25A47;REV__nc|ENSG00000140107|Q6Q0C1-2|SLC25A47 18.13498045792455 0.3414835283589826 2 VYPDD{I|L}{I|L} 7 -1 46.458 0 0 4.4951 0 0 0 215.10344873599846 215.10344873599846 18.577957114533916 0 0 0 0 0.4247425010840047 2 0 0 VYPDD{I|L}{I|L} 4.4951 - 199 + NaN NaN 236139 NaN 19171 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23645 94.275 NaN 414990 35 0 37541 0.261 + 11190 IYIWDLNNF 9 78 599.3004998777495 1196.586446822299 2 599.3005981445312 MULTI HCD FTMS 0 0 0 23643 207547.28125 0.03758962176883266 28 -0.6913375854492188 2 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 134.295615338601 0.00034446139420701925 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 103.46 0 0 8.646 8.646 92.941 0 0 0 3.1822549835175664 3.1822549835175664 3.1822549835175664 9.208187539523749 0 2.6989700043360187 1.5228787452803376 0.28872548999643577 0.6747425010840047 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}E[QT]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]{[RE]|[WV]}[Q{I|L}]QT{M(Oxidation (M))|F} 8.646;7.8765;7.6105;6.5467;6.2219;5.4524;5.4524;2.158;2.0493 +;-;-;-;-;-;-;-;- + 1201 NaN NaN 158167.3 NaN 19172 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23646 94.278 NaN 175560 35 0 15008 0.261 + 13674 KYPENFFLL 9 56 585.8134146706268 NaN 0 585.8133544921875 PEAK HCD FTMS 0 0 0 23643 57224.16015625 0.5475917585513127 50 -1.2103118896484375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 8 15.261 0 0 1.3048 0 0 131.0951662733017 775.3360178112672 906.4311840845689 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L}{M(Oxidation (M))|F} 1.3048 - 65 + NaN NaN 120271.8 NaN 19173 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23647 94.281 NaN 117040 35 0 12985 0.262 + 31166 VVAAAPLLVL 10 32 483.3231671108623 964.6317812885246 2 483.32305908203125 MULTI HCD FTMS 0 0 0 23643 32122.490234375 0.5357429861470562 5 -0.1342926025390625 4 Unmodified _VVAAAPLLVL_ REV__ENSG00000205116|ENST00000378821|TMEM88B 7.910154910731844 0.4334339971971892 2 V{I|L} 2 -1 20.701 0 0 2.146 0 0 734.4730702130875 0 734.4730702130875 0 9.731975075880328 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.146 + + 30 NaN NaN 124402.6 NaN 19174 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23648 94.285 NaN 80056 35 0 28644 0.261 -1 0 30 473.121005518622 472.113729052022 1 473.12109375 MULTI HCD FTMS 0 0 0 23643 44068.1796875 0.5757435984848871 -4 0.0913848876953125 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97209.5 NaN 19175 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23649 94.288 NaN 158320 35 0 15938 0.261 + 14573 LFLALELEP 9 41 522.8024304695925 NaN 0 522.802490234375 PEAK HCD FTMS 0 0 0 23643 26704.013671875 0.558293643210294 8 -0.202972412109375 6 Unmodified _LFLALELEP_ REV__ENSG00000184344|ENST00000329913|GDF3 7.289230182591677 0.2599242500475609 2 E 1 -1 16.99 0 0 1.628 0 0 557.3581104654453 354.1655367486938 911.5236472141391 0 0 0 0 0 1 0 0 0 E 1.628 + + 8 + NaN NaN 113436.2 NaN 19176 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23650 94.291 NaN 85038 35 0 14251 0.261 + 27854 TDLLWTAPFI 10 43 588.8184591400842 1175.6223653469683 2 588.7652587890625 MULTI HCD FTMS 0 0 0 23643 8169.42919921875 0.014293151141334063 18 -0.448394775390625 7 Unmodified _TDLLWTAPFI_ REV__ENSG00000162769|ENST00000366971|FLVCR1 3.5964929083625545 0.45626689593999237 2 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 -1 12.447 0 0 1.0588 0 0 800.4050718344088 0 800.4050718344088 0 12.447274948966937 0 0 0 0.5 0 0 0 P{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.0588 + + 5 NaN NaN 122084.7 NaN 19177 4471 23643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23652 94.296 NaN 473080 35 0 112260 0.326 + 6128 FPEGLFYEF 9 55 574.7685982649667 1147.5226435967334 2 574.7687377929688 MULTI HCD FTMS 0 0 0 23651 254480.109375 0.07786925995394951 35 -0.8483734130859375 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 61.357469665136826 0.01568246967499496 2 [{M(Oxidation (M))|F}E]P{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 9 2 + 58.004 0 0 5.0548 5.0548 91.811 0 0 0 0.33938034516041427 40.837417989917455 0.33938034516041427 58.00440570288196 0 1.8494850021680094 0 0.23965182871044374 0 [{M(Oxidation (M))|F}E]P{[VA]|[{I|L}G]}{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5.0548 - 98 NaN NaN 167952.4 NaN 19178 4472 23651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23653 94.301 NaN 329960 35 0 37009 0.261 + -1 ELQKKLDMI 9 68 567.3158252312028 1132.6170975292055 2 567.3162841796875 MULTI HCD FTMS 0 0 0 23651 165218.375 0.864361691474819 -1 0.02614593505859375 2 Oxidation (M) _ELQKKLDM(Oxidation (M))I_ REV__ENSG00000138778|ENST00000265148|CENPE;REV__nc|ENSG00000138778|Q02224-3|CENPE 13.90604991867851 0.24021115267848145 2 {I|L}V{I|L} 3 -1 31.198 0 0 2.7545 0 0 789.3703566709852 0 789.3703566709852 0 13.239087409443187 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.7545 - 115 NaN NaN 136518 NaN 19179 4472 23651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23654 94.304 NaN 103450 35 0 7592.5 0.261 + 23688 RQLRCLTL 8 45 501.7973345594476 1001.5801161856953 2 501.79766845703125 MULTI HCD FTMS 0 0 0 23651 67864.2109375 1 0 0 3 Unmodified _RQLRCLTL_ REV__ENST00000436066.3_1_19:30165768-30165876:+|nuORF 10.823927491677226 0.514154816617796 2 {I|L}T{I|L} 3 -1 36.198 0 0 3.6141 0 0 656.3535917394017 0 656.3535917394017 0 27.245462655597095 0 0 0 1 0 0 0 {I|L}T{I|L} 3.6141 + + 18 NaN NaN 108171.5 NaN 19180 4472 23651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23655 94.308 NaN 267720 35 0 39553 0.261 -1 FDQQNCTLTF 10 50 637.2807715386949 NaN 0 637.2815551757812 PEAK HCD FTMS 0 0 0 23651 19871.732421875 0.4906131184207684 1 -0.01955413818359375 4 Carbamidomethyl (C) _FDQQNC(Carbamidomethyl (C))TLTF_ ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-2|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E 26.268140514670165 0.2298602997689256 2 T{I|L}{M(Oxidation (M))|F}W 4 -1 35.662 0 0 2.8024 0 0 165.08112324245172 557.1706026666624 722.2517259091142 0 0 0 0 0 1.4247425010840047 0 0.4247425010840047 0 T{I|L}{M(Oxidation (M))|F}W 2.8024 - 58 + NaN NaN 133762.5 NaN 19181 4472 23651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23656 94.311 NaN 207720 35 0 32813 0.263 + 16708 LYADPYGLL 9 58 512.7710165175781 1023.5274801019563 2 512.788330078125 MULTI HCD FTMS 0 0 0 23651 20045.09375 0.03900555278029713 26 -0.6292953491210938 5 Unmodified _LYADPYGLL_ ENSG00000277363|ENST00000617146|SRCIN1;nc|ENSG00000277363|Q9C0H9-2|SRCIN1;SRCIN1|p.E1146Rfs*2|1|0.12|ENSG00000277363|chr17:38533414-38533414|T/-|frameshift_variant 18.13498045792455 0.20367413111508956 2 VA{I|L} 3 7 18.188 0 0 1.777 0 0 722.3251820294937 0 722.3251820294937 0 12.703037561203846 0 0 0 0.3494850021680094 0 0 0 VA{I|L} 1.777 - 18 NaN NaN 131197.8 NaN 19182 4472 23651 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23658 94.316 NaN 1971200 35 0 301640 0.327 + 31966 VYPGLAVFF 9 70 506.7789097301395 1011.543266527079 2 506.7789306640625 MULTI HCD FTMS 0 0 0 23657 1225357 0.7882289626897601 1 -0.03609466552734375 1 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 109.15424536547461 0.003080475237576971 2 [YV]PG{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 78.879 0 0 7.7979 7.7979 92.884 0 0 0 8.307933950609794 55.34704035745584 8.307933950609794 11.020599913279625 0 3.079689690656103 1.5228787452803376 0 0 + + [YV]PG{I|L}AV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]PG{I|L}A{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YV]PG{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V][HV]{I|L}G{[QN]|[E{I|L}]|[KN]}V 7.7979;6.7084;5.7424;1.7117 +;-;-;- + 223 NaN NaN 385415.2 NaN 19183 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23659 94.32 NaN 396020 35 0 143630 0.261 + 8050 GHHSAEGHHP 10 59 533.2345296167447 1064.4545063002893 2 533.234619140625 MULTI HCD FTMS 0 0 0 23657 133962.015625 0.7886686697441684 1 -0.03609466552734375 2 Unmodified _GHHSAEGHHP_ REV__CATSPER1|p.V166M|2|0.41|ENSG00000175294|chr11:66025884-66025884|C/T|missense_variant;REV__ENSG00000175294|ENST00000312106|CATSPER1 1.6526216038709556 0.46655611578153744 2 [MN]V 3 -1 5.0617 0 0 0.47552 0 0 0 717.2737520807249 717.2737520807249 0.45757490560674974 0 0 0 0 0 0 0 0 [MN]V 0.47552 - 8 + NaN NaN 157103 NaN 19184 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23660 94.324 NaN 69707 35 0 6801.4 0.261 -1 0 48 605.8718204675106 1209.729088001821 2 605.8721313476562 MULTI HCD FTMS 0 0 0 23657 59735.98046875 0.3337747239186247 12 -0.30458831787109375 3 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.57779 0 0 392.33390652981717 701.2942598932249 1093.628166423042 0 0 0 0 0 0 0 0 0 {I|L} 0.57779 - 25 + NaN NaN 100579.2 NaN 19185 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23661 94.327 NaN 99413 35 0 12625 0.261 + 7672 FYLDQVALSW 10 36 621.31312547958 1240.6116980259599 2 621.3143310546875 MULTI HCD FTMS 0 0 0 23657 50756.2890625 0.41907214114169594 4 -0.1114654541015625 4 Unmodified _FYLDQVALSW_ ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2 34.221707139014875 0.19555013683537745 2 E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW 10 4 + 63.121 0 0 5.0879 5.0879 82.744 0 0 0 2.090606190045108 2.090606190045108 2.090606190045108 0.6690156004425774 0 2 0 0.4247425010840047 0 E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YQ]{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}{[{M(Oxidation (M))|F}D]|MM}VA{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;[YQ]{I|L}AV{[{M(Oxidation (M))|F}D]|MM}{I|L}SW;E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}AT{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SW;[YQ]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TA{I|L}SW;{[CT]|[{M(Oxidation (M))|F}G]}S{I|L}AT{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}SW;[YQ]{I|L}{[{M(Oxidation (M))|F}D]|MM}V[RD][VS] 5.0879;5.034;4.9194;4.8119;4.758;4.631;4.2418;4.1272;3.9658;3.188 -;-;-;-;-;-;-;-;-;- 208 + NaN NaN 104355.9 NaN 19186 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23662 94.33 NaN 363620 35 0 40150 0.261 -1 YLGYPVLQI 9 67 554.3077896488119 1106.6010263644237 2 554.30859375 MULTI HCD FTMS 0 0 0 23657 53848.8125 0.020297624965309992 -10 0.233917236328125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YLGYPVLQI_ ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549 36.04419817259434 0.08350412372117409 2 VV{I|L}Q{I|L} 5 -1 48.443 0 0 4.3777 0 0 536.2124500959 0 536.2124500959 0 38.52182518111363 0 0 0 1.3494850021680094 0 0 0 VV{I|L}Q{I|L} 4.3777 - 219 NaN NaN 152186.1 NaN 19187 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23663 94.334 NaN 133690 35 0 12632 0.261 -1 IMFLIDFYQ 9 53 603.2980961393025 1204.581639345405 2 603.2984008789062 MULTI HCD FTMS 0 0 0 23657 50245.59765625 0.6918983353933241 -2 0.0457000732421875 6 Oxidation (M) _IM(Oxidation (M))FLIDFYQ_ ENST00000274496.9_1_5:143539608-143539680:-|nuORF 29.081581746732265 0.1154664336125038 2 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6 -1 80.438 0 0 6.6777 0 0 0 469.13703333072505 469.13703333072505 73.44843468456581 0 0 0 0 1.9291746928241125 1.6989700043360187 0 0 YP{M(Oxidation (M))|F}{I|L}{I|L}V 6.6777 - 194 + NaN NaN 113528.5 NaN 19188 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23664 94.337 NaN 157040 35 0 17810 0.261 + 26874 SYIPLFPQL 9 53 539.302385658988 1076.5902183847759 2 539.3028564453125 MULTI HCD FTMS 0 0 0 23657 65022.8828125 0.15177006655182396 15 -0.37652587890625 7 Unmodified _SYIPLFPQL_ ENSG00000165996|ENST00000361271|HACD1 24.020572477871973 0.15282392193088168 2 {M(Oxidation (M))|F}[{I|L}P]PT{M(Oxidation (M))|F} 6 6 25.355 0 0 2.3551 0 0 356.20560519945485 0 356.20560519945485 0 19.87002527416834 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}[{I|L}P]PT{M(Oxidation (M))|F} 2.3551 - 56 + NaN NaN 117140.5 NaN 19189 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23665 94.34 NaN 49793 35 0 7594 0.261 -1 VTLCFFCLLY 10 31 639.816560483841 NaN 0 639.8157958984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _VTLC(Carbamidomethyl (C))FFCLLY_ ENSG00000186501|ENST00000374076|TMEM222;ENST00000464720.5_1_1:27657613-27661954:+|nuORF;ENST00000470223.1_1_1:27660299-27660773:+|nuORF;ENST00000471456.1_1_1:27660299-27661954:+|nuORF;ENST00000486082.5_1_1:27657613-27661179:+|nuORF;nc|ENSG00000186501|Q9H0R3-2|TMEM222 1.4819007175156935 0.33891598740166873 2 W 1 -1 1.9897 0 0 0.15574 0 0 583.4030661807695 505.1164950006469 1088.5195611814165 0 0 0 0 0 0 0 0 0 W 0.15574 - 1 + NaN NaN 96361.1 NaN 19190 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23666 94.344 NaN 255860 35 0 15046 0.261 + 1046 AYGITPLFVAA 11 71 561.813093390506 1121.6116338478118 2 561.8139038085938 MULTI HCD FTMS 0 0 0 23657 20303.318359375 0.07142628337967881 20 -0.5018539428710938 9 Unmodified _AYGITPLFVAA_ ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2;nc|ENSG00000100628|Q96Q27-1|ASB2 9.38312468134398 0.3753269387758208 2 {I|L} 1 10 11.154 0 0 0.99442 0 0 406.22120523628683 599.2807100885374 1005.5019153248243 0 0 0 0 0 0.566901560044258 0 0 0 + {I|L} 0.99442 + + 98 + NaN NaN 127731.3 NaN 19191 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23667 94.347 NaN 45583 35 0 4176.4 0.262 + 21451 PWPGQPLD 8 38 455.22536699003615 NaN 0 455.2255554199219 PEAK HCD FTMS 0 0 0 23657 36578.2890625 0.7671216918742237 13 -0.32410430908203125 10 Unmodified _PWPGQPLD_ ENST00000609350.1_1_2:128644297-128644417:+|nuORF 0.7936320650641473 0.38822285293237185 2 Q 1 7 5.4846 0 0 0.60374 0 0 263.21939745487856 514.1265963190061 777.3459937738846 0 0 0 0 0 0 0 0 0 + Q 0.60374 + + 2 + NaN NaN 98233 NaN 19192 4473 23657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23669 94.352 NaN 495270 35 0 26091 0.327 -1 0 94 451.93261201226846 1352.7760066370054 3 451.9326171875 MULTI HCD FTMS 0 0 0 23668 331166.09375 0.5417725009626567 14 -0.34043121337890625 1 NaN NaN 2 K 1 -1 8.9794 0 0 0.66378 0 0 938.530212288161 283.11789880924067 1221.6481110974016 0 0 0 0 0 0.5 0 0 0 K 0.66378 - 62 + NaN NaN 165348.3 NaN 19193 4474 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23670 94.356 NaN 361190 35 0 40227 0.261 + 5919 FPDLPFTDEL 10 72 597.2900039939598 1192.5654550547195 2 597.290283203125 MULTI HCD FTMS 0 0 0 23668 116805.703125 0.5966940460022325 -9 0.22791290283203125 2 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 60.07390631473393 0.04115296186411585 2 T{I|L}YVPDE{I|L} 8 6 57.776 0 0 4.8447 0 0 244.06923110175939 0 244.06923110175939 0 47.85457533920862 0 0 0 1.2059771852360797 0 1.066901560044258 0 T{I|L}YVPDE{I|L} 4.8447 - 224 NaN NaN 147655.2 NaN 19194 4474 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23671 94.36 NaN 285420 35 0 38094 0.261 + 6094 FPEEVIATIF 10 61 583.3103290180842 1164.6061051029683 2 583.3111572265625 MULTI HCD FTMS 0 0 0 23668 114715.4296875 0.26254845950900657 -11 0.27001190185546875 3 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 47.748688679222035 0.08597705450879027 2 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 65.745 0 0 5.6453 0 0 601.2747521461955 0 601.2747521461955 0 55.28782221775522 0 0 0 2.3807196863200843 0 0.8494850021680094 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 5.6453 + + 181 NaN NaN 136417.1 NaN 19195 4474 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23672 94.363 NaN 219060 35 0 40924 0.264 -1 0 37 405.11885854566407 808.2231641581282 2 405.118896484375 MULTI HCD FTMS 0 0 0 23668 19908.802734375 0.17766130997261173 16 -0.3862152099609375 4 NaN NaN 2 V 1 -1 0.48455 0 0 0.059953 0 0 422.05404902316565 284.07538782291255 706.1294368460782 0 0 0 0 0 0 0 0 0 V 0.059953 - 3 + NaN NaN 123998.8 NaN 19196 4474 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23673 94.367 NaN 154050 35 0 13407 0.261 + 31556 VYGTIFLTF 9 63 530.7895517903393 NaN 0 530.7891845703125 PEAK HCD FTMS 0 0 0 23668 28309.310546875 0.15374873717926688 9 -0.21271514892578125 5 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 48.345845343767074 0.05150985380647864 2 {I|L}T 2 7 31.766 0 0 2.998 0 0 680.3535653953285 162.05579553775627 842.4093609330847 0 0 0 0 0 1.4247425010840047 0 0.6549471895720984 0 + {I|L}T 2.998 + + 140 + NaN NaN 110834.2 NaN 19197 4474 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23674 94.37 NaN 144960 35 0 14301 0.261 + 18502 MRPLMHSVW 9 49 578.7901030100302 1155.5656530868603 2 579.293212890625 MULTI HCD FTMS 0 0 0 23668 17022.421875 0.21348130099876803 11 -0.26849365234375 6 Unmodified _MRPLMHSVW_ REV__ENST00000304863.5_1_19:29698858-29698915:-|nuORF 3.944395688203298 0.32111559684428237 2 V 1 -1 4.6041 0 0 0.39843 0 0 263.11699693627276 790.3533419244749 1053.4703388607477 0 0 0 0 0 0 0 0 0 V 0.39843 + + 19 + NaN NaN 109612 NaN 19198 4474 23668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23676 94.375 NaN 1445600 35 0 222980 0.327 + 34500 YPFLLVGDLM 10 71 592.3073986493324 1182.6002443654647 2 592.3074340820312 MULTI HCD FTMS 0 0 0 23675 614647.125 0.8668790094135053 4 -0.09822845458984375 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 154.46347324262513 9.480379022298538E-08 2 T{I|L}E{I|L}{I|L}VGD{I|L}{M(Oxidation (M))|F} 10 3 102.93 0 0 8.7041 0 0 64.00196056262378 0 64.00196056262378 0 82.60696766396192 0 0 0 2.2614393726401687 0 2.5986198691406326 0 T{I|L}E{I|L}{I|L}VGD{I|L}{M(Oxidation (M))|F} 8.7041 - 1131 + NaN NaN 320584.2 NaN 19199 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23677 94.379 NaN 616790 35 0 44733 0.261 -1 PFFLPGVCMY 10 78 595.2748967982807 1188.5352406633613 2 595.274658203125 MULTI HCD FTMS 0 0 0 23675 302252.15625 0.9970254382958326 -4 0.10474395751953125 2 Oxidation (M) _PFFLPGVCM(Oxidation (M))Y_ ENSG00000135355|ENST00000369352|GJA10;GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant 24.67388899826682 0.2803207841117527 2 {I|L}M{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}SP{I|L} 8 -1 86.941 0 0 7.315 0 0 0 236.99936853580314 236.99936853580314 73.75360366028858 0 0 0 0 2.6549471895720984 1.6989700043360187 1.110924374808178 0 {I|L}M{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}SP{I|L} 7.315 - 286 + NaN NaN 194117.6 NaN 19200 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23678 94.383 NaN 309280 35 0 14611 0.263 -1 0 68 457.60827744250093 1369.803002927703 3 457.608154296875 MULTI HCD FTMS 0 0 0 23675 184817.375 0.499974004404626 10 -0.24554443359375 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.474 0 0 0.91066 0 0 1204.7239756833653 0 1204.7239756833653 0 2.870156338638594 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.91066 - 18 + NaN NaN 141272.5 NaN 19201 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23679 94.386 NaN 400170 35 0 38722 0.261 + -1 FASCPMNNRMA 11 67 438.85021654934604 1313.5288202482382 3 438.84979248046875 MULTI HCD FTMS 0 0 0 23675 60289.4609375 0.357090648044214 3 -0.0786285400390625 4 Carbamidomethyl (C),Oxidation (M) _FASC(Carbamidomethyl (C))PMNNRM(Oxidation (M))A_ REV__ENST00000409177.5_1_2:105979801-106002969:-|nuORF;REV__nc|ENSG00000115641|Q14192-2|FHL2 2.4347853303010236 0.4082425251555256 2 RG{M(Oxidation (M))|F} 3 -1 17.167 0 0 1.3069 0 0 935.327051304682 0 935.327051304682 0 0.7133375178436587 0 0 0 0 0 0 0 RG{M(Oxidation (M))|F} 1.3069 - 47 + NaN NaN 153383 NaN 19202 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23680 94.39 NaN 350040 35 0 57022 0.261 -1 MELGLSWVF 9 59 549.2698742073218 1096.5251954814435 2 549.7818603515625 MULTI HCD FTMS 0 0 0 23675 35617.0703125 1 0 0 5 Oxidation (M) _M(Oxidation (M))ELGLSWVF_ nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000211942|P01766|IGHV3-13 21.74664581756881 0.17247014374749275 2 V{[QG]|[NA]}[DV]WV{M(Oxidation (M))|F} 8 -1 43.365 0 0 3.9548 0 0 148.02980706250918 0 148.02980706250918 0 34.41245036856159 0 0 0 1.4247425010840047 0 0.3494850021680094 0.9247425010840047 V{[QG]|[NA]}[DV]WV{M(Oxidation (M))|F} 3.9548 - 167 + NaN NaN 150064.3 NaN 19203 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23681 94.393 NaN 193420 35 0 62736 0.261 -1 0 33 503.1076293324891 NaN 0 503.1080322265625 PEAK HCD FTMS 0 0 0 23675 60176.36328125 0.3608835909727547 -46 1.00421142578125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 125182.3 NaN 19204 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23682 94.396 NaN 116930 35 0 7438 0.261 + 32473 WEKRHVLF 8 55 557.8114329507824 1113.6083129683648 2 558.3248901367188 MULTI HCD FTMS 0 0 0 23675 6359.494140625 1 0 0 7 Unmodified _WEKRHVLF_ ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 6.354104778181461 0.5325651638111438 2 {I|L}W[QA]{[CA]|SS}{I|L}{M(Oxidation (M))|F} 8 6 20.623 0 0 1.8519 0 0 163.13377791152726 0 163.13377791152726 0 13.27623146104628 0 0 0 0 0 0.4247425010840047 0 {I|L}W[QA]{[CA]|SS}{I|L}{M(Oxidation (M))|F} 1.8519 - 59 + NaN NaN 109107.1 NaN 19205 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23683 94.4 NaN 62496 35 0 6151.2 0.261 + 22976 QYWLWWIF 8 39 621.31312547958 1240.6116980259599 2 621.3126220703125 MULTI HCD FTMS 0 0 0 23675 23058.08984375 0.19038040920523425 6 -0.14070892333984375 8 Unmodified _QYWLWWIF_ ENSG00000102471|ENST00000218652|NDFIP2 13.50788311687929 0.4944073034352369 2 V[{I|L}A]SW 5 6 26.198 0 0 2.1117 0 0 666.3006458966812 0 666.3006458966812 0 6.1928031367991565 0 0 0 1 0 0 0 V[{I|L}A]SW 2.1117 - 16 NaN NaN 98464 NaN 19206 4475 23675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23685 94.405 NaN 6692400 35 0 1030600 0.327 + 1303 AYNDNWFITF 10 123 645.7925078670975 1289.5704628009948 2 645.792724609375 MULTI HCD FTMS 0 0 0 23684 3154001.75 0.3391394625857552 4 -0.09491729736328125 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 243.32672525570652 6.027301867731634E-43 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 10 0 + 117.04 0 0 9.0757 9.0757 92.779 0 0 0 17.263261709428193 78.82821942467038 17.263261709428193 9.164539485499262 0 2.9674165578762484 1.3010299956639813 1.0783409326844267 2.048455006504028 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDNW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NY[HD]{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNWVVY{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GGDGGW{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F} 9.0757;8.365;8.365;7.6186;6.9079;6.9079;6.316;6.0686;5.5499;4.9409 +;-;-;-;-;-;-;-;-;- + 5855 NaN NaN 1113653.8 NaN 19207 4476 23684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23686 94.409 NaN 673520 35 0 97959 0.262 -1 0 76 527.2865050913166 526.2792286247166 1 527.3020629882812 MULTI HCD FTMS 0 0 0 23684 32669.662109375 0.40333503603302867 4 -0.09491729736328125 2 NaN NaN 2 {M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4 -1 + 50.547 0 0 9.6046 9.6046 92.117 0 0 0 27.487285392253682 15.740312677277188 15.740312677277188 6.817496819840656 0 0.8807196863200843 0 0.8252574989159953 0 {M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F};T{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[YV]V{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F} 9.6046;8.3092;6.9861;6.015;5.9715;5.4069 -;-;-;-;-;- 75 + NaN NaN 199487.6 NaN 19208 4476 23684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23687 94.412 NaN 107540 35 0 14465 0.261 + 7394 FVKQKYMNKKK 11 47 481.2836647341653 1440.829164802696 3 481.2838134765625 MULTI HCD FTMS 0 0 0 23684 43522.1484375 0.3664046991692805 6 -0.13404083251953125 3 Unmodified _FVKQKYMNKKK_ tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105777.8 NaN 19209 4476 23684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23688 94.416 NaN 392640 35 0 70518 0.261 + 26834 SYIFMPFSF 9 68 577.765099921759 1153.5156469103179 2 577.7649536132812 MULTI HCD FTMS 0 0 0 23684 79738.671875 0.45201110631440455 -3 0.088592529296875 4 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 65.23502041540118 0.010630085227462206 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F} 9 0 + 47.654 0 0 4.1312 4.1312 84.395 0 0 0 9.009461452434238 40.642536834292606 9.009461452434238 8.010299956639805 0 1.805462187404089 0 0.4247425010840047 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YV]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[Y{I|L}]{M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 4.1312;3.4368;2.5908;2.0604;1.8963 +;-;-;-;- + 272 NaN NaN 148699.3 NaN 19210 4476 23684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23689 94.419 NaN 36109 35 0 4167.8 0.261 -1 MAMGLFRVCL 10 28 620.3063185975404 NaN 0 620.3065795898438 PEAK HCD FTMS 0 0 0 23684 28814.759765625 0.3565048379557404 8 -0.1797637939453125 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))MAMGLFRVC(Carbamidomethyl (C))L_ ENSG00000148841|ENST00000337478|ITPRIP 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95202.4 NaN 19211 4476 23684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23690 94.422 NaN 42630 35 0 3078.7 0.261 + 35310 YWLHERVFP 9 37 623.8218366025993 NaN 0 623.7457275390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YWLHERVFP_ AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2;ENST00000529712.5_1_11:47690447-47736202:-|nuORF;nc|ENSG00000165923|Q5U5Z8-2|AGBL2 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91460.5 NaN 19212 4476 23684 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23692 94.427 NaN 353410 35 0 80359 0.327 + 6129 FPEGLFYEF 9 56 574.7685982649667 1147.5226435967334 2 574.76904296875 MULTI HCD FTMS 0 0 0 23691 177708.59375 0.05437767500476011 40 -0.9591217041015625 1 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 53.972 0 0 4.7034 0 0 543.2703093718349 0 543.2703093718349 0 29.195925227640984 0 0 0 2 0 0.805462187404089 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4.7034 + + 76 + NaN NaN 148759.3 NaN 19213 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23693 94.432 NaN 483870 35 0 38261 0.261 + 7018 FPYPLQWSL 9 72 575.8006322882404 1149.5867116432808 2 575.8004760742188 MULTI HCD FTMS 0 0 0 23691 142393.421875 0.9344417832568301 -2 0.05242156982421875 2 Unmodified _FPYPLQWSL_ ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF 51.629811660486645 0.02929079705179888 2 EQWS{I|L} 5 5 54.508 0 0 4.7416 0 0 488.2668629376969 0 488.2668629376969 0 19.370674166737274 0 0 0 1.5 0 0.3054621874040891 0 EQWS{I|L} 4.7416 - 1034 NaN NaN 162505.6 NaN 19214 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23694 94.435 NaN 311030 35 0 26119 0.261 + 11191 IYIWDLNNF 9 61 599.3004998777495 1196.586446822299 2 599.30078125 MULTI HCD FTMS 0 0 0 23691 160891.484375 0.02913962547260445 34 -0.8121871948242188 3 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 110.6747026088012 0.0028322563155251486 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 92.885 0 0 7.7625 7.7625 91.668 0 0 0 15.652369334980364 77.96388461952553 15.652369334980364 9.208187539523749 0 2.7302046884880937 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F} 7.7625;6.993;6.993;6.2271 +;-;-;- + 811 NaN NaN 131797.9 NaN 19215 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23695 94.439 NaN 169610 35 0 17928 0.263 + 8122 GLPPGYAVLA 10 47 479.2733376749538 956.5321224167076 2 479.2729797363281 MULTI HCD FTMS 0 0 0 23691 135122.640625 0.8384724603332967 -6 0.15716552734375 4 Unmodified _GLPPGYAVLA_ ENST00000267102.12_1_12:49495282-49496146:-|nuORF 4.3292370932331545 0.45238836448149167 2 MAV[WP]AV 7 7 25.706 0 0 2.6874 0 0 0 199.10885034732658 199.10885034732658 18.71600731282193 0 0 0 0 0 0 0 0 MAV[WP]AV 2.6874 - 50 + NaN NaN 113137.8 NaN 19216 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23696 94.442 NaN 254160 35 0 35332 0.261 -1 MELGLSWVF 9 58 549.2698742073218 1096.5251954814435 2 549.2703247070312 MULTI HCD FTMS 0 0 0 23691 57756.9375 0.654649436247354 5 -0.11116790771484375 5 Oxidation (M) _M(Oxidation (M))ELGLSWVF_ nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000211942|P01766|IGHV3-13 28.486842064014134 0.11819662193267319 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}VHHWV{M(Oxidation (M))|F} 8 -1 + 50.01 0 0 4.5608 4.5608 90.49 0 0 0 0.45757490560674796 27.959252469304303 0.45757490560674796 38.637444175349316 0 1.3807196863200843 0 0.3807196863200844 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}VHHWV{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}V[YK][VS][DN] 4.5608;1.0372 -;- 57 NaN NaN 133521.8 NaN 19217 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23697 94.445 NaN 185000 35 0 16475 0.261 -1 SPMDIFDMF 9 64 559.7299850042143 1117.4454170752285 2 559.7302856445312 MULTI HCD FTMS 0 0 0 23691 46832.93359375 0.5658502702851691 -5 0.13101959228515625 6 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 26.88365393820708 0.12808753336095696 2 {I|L}V[KA]EDM{M(Oxidation (M))|F} 8 -1 52.428 0 0 4.6918 0 0 165.96988488226742 0 165.96988488226742 0 45.516609670558594 0 0 0 1.305462187404089 0 0.4247425010840047 0 {I|L}V[KA]EDM{M(Oxidation (M))|F} 4.6918 - 237 + NaN NaN 113426.6 NaN 19218 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23698 94.449 NaN 139330 35 0 9480.4 0.261 + 13675 KYPENFFLL 9 58 585.8134146706268 NaN 0 585.8135375976562 PEAK HCD FTMS 0 0 0 23691 38494.5 0.36836313354353767 56 -1.2663345336914062 7 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.19168101101984525 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 19.169 0 0 1.6389 0 0 131.09568413969924 628.2716158502561 759.3672999899554 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.6389 - 81 + NaN NaN 114684 NaN 19219 4477 23691 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23700 94.454 NaN 640160 35 0 93300 0.327 + 31967 VYPGLAVFF 9 42 506.7789097301395 1011.543266527079 2 506.77880859375 MULTI HCD FTMS 0 0 0 23699 320437.75 0.20612630873218227 6 -0.13068389892578125 1 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 67.41302359171755 0.009925318700911543 2 [YV]{I|L}[PG]AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 75.34 0 0 7.448 7.448 92.184 0 0 0 20.96664959441256 67.26789385964942 20.96664959441256 10.72559982972642 0 2.4247425010840047 1.5228787452803376 0 0 [YV]{I|L}[PG]AV{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV]{I|L}[QP]V{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.448;6.3877 -;- 58 NaN NaN 176853.1 NaN 19220 4478 23699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23701 94.458 NaN 1002400 35 0 237810 0.261 + 11140 IYIPSYFDF 9 71 582.7842552525641 1163.553957571928 2 582.7843627929688 MULTI HCD FTMS 0 0 0 23699 398121.53125 0.1945627306558214 -6 0.1572265625 2 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 100.37149154755038 0.004254194004462789 2 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}] + + 64.391 22.218 8.046 5.534 5.534 63.12 0 0 0 0 38.729494892538696 0 0 0 2.6989700043360187 0 0.6747425010840047 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.534 + + 293 + NaN NaN 241549 NaN 19221 4478 23699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23702 94.462 NaN 332730 35 0 33554 0.261 + 5430 FHWRYLVI 8 60 567.3158252312028 1132.6170975292055 2 567.3156127929688 MULTI HCD FTMS 0 0 0 23699 94022.9453125 0.49189342316045 5 -0.11113739013671875 3 Unmodified _FHWRYLVI_ ENSG00000102038|ENST00000371121|SMARCA1;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1 13.50788311687929 0.4944073034352369 2 {I|L}V{I|L} 3 5 35.445 0 0 3.1295 0 0 789.3651600568375 0 789.3651600568375 0 14.47621246364342 0 0 0 0.9247425010840047 0 0 0 + {I|L}V{I|L} 3.1295 + + 171 NaN NaN 136910 NaN 19222 4478 23699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23703 94.465 NaN 293400 35 0 43726 0.261 + 16804 LYEADFVLF 9 54 558.7840722874704 1115.5535916417407 2 558.7836303710938 MULTI HCD FTMS 0 0 0 23699 68584.3046875 0.1992586873771712 -5 0.13767242431640625 4 Unmodified _LYEADFVLF_ ENSG00000136213|ENST00000618655|CHST12 48.345845343767074 0.03388484103555672 2 D{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 5 4 61.766 0 0 5.5368 0 0 476.2279225080094 0 476.2279225080094 0 49.79359965382894 0 0 0 2.3494850021680094 0 0.3807196863200844 0 + D{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 5.5368 + + 133 NaN NaN 130551.6 NaN 19223 4478 23699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23704 94.468 NaN 147100 35 0 15196 0.261 + 6508 FPIQYMFLL 9 50 586.3155641753027 NaN 0 586.3159790039062 PEAK HCD FTMS 0 0 0 23699 41708.64453125 0.5673664322719699 19 -0.46245574951171875 5 Unmodified _FPIQYMFLL_ REV__ENSG00000181903|ENST00000314259|OR4C6 5.230669730166228 0.26989974671959066 2 {I|L}{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.80846 0 0 132.10068971129846 775.3389986627561 907.4396883740546 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.80846 - 12 + NaN NaN 114292.6 NaN 19224 4478 23699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23706 94.473 NaN 1471400 35 0 211590 0.327 + 6060 FPDYLVIQI 9 68 554.3077896488119 1106.6010263644237 2 554.3080444335938 MULTI HCD FTMS 0 0 0 23705 912605.375 0.34399498861885 -4 0.09822845458984375 1 Unmodified _FPDYLVIQI_ ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;ENST00000541969.1_1_12:6969646-6972391:+|nuORF;nc|ENSG00000111667|P45974-2|USP5 71.92227651296345 0.008466197542043549 2 Y{I|L}V{I|L}Q{I|L} 6 3 56.363 0 0 5.0933 0 0 359.14570815254064 0 359.14570815254064 0 38.571231544599485 0 0 0 1.8494850021680094 0 0 0.2742275032520141 + Y{I|L}V{I|L}Q{I|L} 5.0933 + + 285 NaN NaN 315240.6 NaN 19225 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23707 94.478 NaN 220460 35 0 85388 0.261 + 33105 YDTAEDEFI 9 30 551.7329577963087 1101.4513626594173 2 551.7326049804688 MULTI HCD FTMS 0 0 0 23705 99128.4921875 0.21231513939684546 -4 0.09822845458984375 2 Unmodified _YDTAEDEFI_ tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1 15.847184025352803 0.2234401846867398 2 E{M(Oxidation (M))|F}{I|L} 3 6 39.253 0 0 3.5637 0 0 694.2476253611679 0 694.2476253611679 0 36.15356566548286 0 0 0 0.9247425010840047 0 0.3807196863200844 0 + E{M(Oxidation (M))|F}{I|L} 3.5637 + + 11 NaN NaN 132454 NaN 19226 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23708 94.481 NaN 219290 35 0 37874 0.261 + 14474 LEWLVTAPF 9 45 538.2944089029704 1074.5742648727407 2 538.2938842773438 MULTI HCD FTMS 0 0 0 23705 77395.3125 0.25322545106726047 -16 0.3911895751953125 3 Unmodified _LEWLVTAPF_ REV__ENSG00000155363|ENST00000369645|MOV10;REV__ENST00000468624.5_1_1:113217534-113241292:+|nuORF;REV__ENST00000496577.5_1_1:113231344-113241292:+|nuORF;REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 16.942295170755138 0.21397866736869717 2 VYAS 4 -1 58.047 0 0 5.4019 0 0 0 651.3500460260374 651.3500460260374 29.776296993281406 0 0 0 0 0.7614393726401688 2 0 0 VYAS 5.4019 - 21 + NaN NaN 133315.4 NaN 19227 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23709 94.484 NaN 95604 35 0 8860.1 0.261 + 34490 YPFLKEVYF 9 44 603.3153325741284 NaN 0 603.2981567382812 PEAK HCD FTMS 0 0 0 23705 11239.4814453125 0.660943371218473 -1 0.01959991455078125 4 Unmodified _YPFLKEVYF_ tr|U7SNR7|U7SNR7_FUSNU1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxrPE=3SV=1 7.289230182591677 0.2599242500475609 2 VP{M(Oxidation (M))|F}{I|L}{I|L}V 6 5 31.771 0 0 2.6374 0 0 64.03671929868331 469.1378573053344 533.1745766040177 0 0 0 0 0 0 0 0 0 VP{M(Oxidation (M))|F}{I|L}{I|L}V 2.6374 - 69 + NaN NaN 115767.9 NaN 19228 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23710 94.488 NaN 84405 35 0 9074 0.264 + 7100 FRKLLCRFLN 10 51 437.25747185220166 1308.750586156805 3 437.2577209472656 MULTI HCD FTMS 0 0 0 23705 3987.142578125 0.03327489601314841 23 -0.5472488403320312 5 Unmodified _FRKLLCRFLN_ ENST00000333957.8_1_12:22602190-22602310:-|nuORF 0.776531954647913 0.4711933975711956 2 K 1 9 0.71334 0 0 0.054505 0 0 806.45097785778 371.1837557428344 1177.6347336006145 0 0 0 0 0 0 0 0 0 + K 0.054505 + + 3 + NaN NaN 115791.1 NaN 19229 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23711 94.491 NaN 82168 35 0 27923 0.261 + 1851 CVHDRAMSF 9 36 533.2345296167447 1064.4545063002893 2 533.2354736328125 MULTI HCD FTMS 0 0 0 23705 40508.5546875 0.23848422845533399 7 -0.16683197021484375 6 Unmodified _CVHDRAMSF_ REV__ENST00000257915.9_1_12:51500364-51501019:-|nuORF 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.372 0 0 899.3759063020456 0 899.3759063020456 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.372 + + 1 + NaN NaN 94995.5 NaN 19230 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23712 94.495 NaN 196450 35 0 36070 0.261 + 10174 IFTAPIFSE 9 60 512.7721352362807 NaN 0 512.7894287109375 PEAK HCD FTMS 0 0 0 23705 6645.5068359375 0.24175606372612618 -11 0.27152252197265625 7 Unmodified _IFTAPIFSE_ ENSG00000155754|ENST00000439140|C2CD6 18.13498045792455 0.19991664011725976 2 {M(Oxidation (M))|F}C{I|L}{I|L} 4 7 18.047 0 0 1.7633 0 0 131.094977404399 413.2186678522094 544.3136452566084 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}C{I|L}{I|L} 1.7633 - 38 + NaN NaN 119308.9 NaN 19231 4479 23705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23714 94.499 NaN 475000 35 0 25244 0.327 -1 0 82 451.93261201226846 1352.7760066370054 3 451.9326171875 MULTI HCD FTMS 0 0 0 23713 323507.78125 0.5292438538741334 20 -0.4691619873046875 1 NaN NaN 2 VQ{[HG]|PP}N{[HG]|PP}N 8 -1 17.484 0 0 1.2925 0 0 491.27781874824376 0 491.27781874824376 0 10.138050198288017 0 0 0 1.3494850021680094 0 0 0 VQ{[HG]|PP}N{[HG]|PP}N 1.2925 - 77 NaN NaN 165343.5 NaN 19232 4480 23713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23715 94.504 NaN 106100 35 0 12798 0.261 + 26932 SYLENLENLF 10 43 621.3061480719178 1240.5977432106356 2 621.3043823242188 MULTI HCD FTMS 0 0 0 23713 31031.37109375 0.25031612370483813 -3 0.07204437255859375 2 Unmodified _SYLENLENLF_ ENSG00000179715|ENST00000546455|PCED1B 59.05245873256422 0.044867740978679724 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EN{I|L}{M(Oxidation (M))|F} 10 0 + 69.786 0 0 5.6252 5.6252 87.165 0 0 0 4.884381005764311 62.79676584209078 4.884381005764311 9.164539485499255 0 2.3182503180159344 0 0 1.1989700043360187 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}[TP]EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}{I|L}M[{I|L}A]{[WS]|[C(Carbamidomethyl (C)){I|L}]} 5.6252;4.8865;4.1045;3.7242;1.2864 +;-;-;-;- + 237 NaN NaN 103390.2 NaN 19233 4480 23713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23716 94.507 NaN 57372 35 0 6525 0.262 + 31557 VYGTIFLTF 9 38 530.7902486383048 NaN 0 530.790771484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VYGTIFLTF_ ENSG00000124067|ENST00000316341|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 10.823927491677226 0.2427956001690155 2 {I|L}T 2 7 17.959 0 0 1.6949 0 0 680.355813583447 162.0557039850219 842.4115175684689 0 0 0 0 0 1 0 0 0 + {I|L}T 1.6949 + + 9 + NaN NaN 93093.2 NaN 19234 4480 23713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23717 94.511 NaN 48785 35 0 6429.7 0.261 + 23873 RSRRRRVPQ 9 38 605.8716314859546 NaN 0 605.8731079101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RSRRRRVPQ_ REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;REV__ENSG00000164061|ENST00000296452|BSN 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97937.3 NaN 19235 4480 23713 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23719 94.516 NaN 850410 35 0 125300 0.327 + 34501 YPFLLVGDLM 10 66 592.3073986493324 1182.6002443654647 2 592.3074951171875 MULTI HCD FTMS 0 0 0 23718 325314.65625 0.4588135785353181 10 -0.2563629150390625 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 112.59319219568356 4.798275876566979E-05 2 [Y{I|L}]M{I|L}{I|L}VGD{I|L}T 10 3 85.856 0 0 7.26 0 0 0 60.97804277744232 60.97804277744232 73.1534346010126 0 0 0 0 2.6549471895720984 1.5228787452803376 0.8494850021680094 0 [Y{I|L}]M{I|L}{I|L}VGD{I|L}T 7.26 - 669 NaN NaN 218841.4 NaN 19236 4481 23718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23720 94.52 NaN 525570 35 0 34938 0.261 + -1 SCMLSKMQVF 10 80 595.2748967982807 1188.5352406633613 2 595.27490234375 MULTI HCD FTMS 0 0 0 23718 217266.171875 0.7166860376716653 2 -0.0490570068359375 2 Oxidation (M) _SCM(Oxidation (M))LSKMQVF_ REV__ENSG00000128512|ENST00000428084|DOCK4;REV__ENST00000468571.1_7:111617053-111644151:-|nuORF;REV__ENST00000476846.1_7:111503332-111846439:-|nuORF;REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4;REV__nc|ENSG00000128512|Q8N1I0|DOCK4 18.1463463914782 0.3413772152514074 2 {I|L}MCCS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 55.548 0 0 4.6737 0 0 0 354.1816500299438 354.1816500299438 34.12158604194605 0 0 0 0 1.7614393726401687 1.3979400086720375 0.8494850021680094 0 {I|L}MCCS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.6737 - 512 + NaN NaN 172126.5 NaN 19237 4481 23718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23721 94.524 NaN 256910 35 0 11501 0.264 -1 0 63 457.60827744250093 1369.803002927703 3 457.6083068847656 MULTI HCD FTMS 0 0 0 23718 162545.828125 0.43972428775661565 16 -0.4003753662109375 3 NaN NaN 2 D 1 -1 9.6041 0 0 0.70113 0 0 61.052936968310696 1190.6770259641708 1251.7299629324814 0 0 0 0 0 0.5 0 0 0 D 0.70113 - 8 + NaN NaN 126813.6 NaN 19238 4481 23718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23722 94.527 NaN 370700 35 0 42744 0.261 + 26897 SYIYLTVSF 9 80 546.78329933373 1091.55204573426 2 546.7841796875 MULTI HCD FTMS 0 0 0 23718 86568.0625 0.3013168003343205 -4 0.088287353515625 4 Unmodified _SYIYLTVSF_ ENST00000308488.10_1_11:77375811-77375982:-|nuORF 26.88365393820708 0.12808753336095696 2 {I|L}{I|L}D[HV]V{M(Oxidation (M))|F} 7 6 51.503 0 0 4.7183 0 0 250.09509839227266 0 250.09509839227266 0 28.57077924873593 0 0 0 2.7302046884880937 0 0 0 {I|L}{I|L}D[HV]V{M(Oxidation (M))|F} 4.7183 - 500 NaN NaN 142513.1 NaN 19239 4481 23718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23723 94.53 NaN 80332 35 0 10432 0.261 -1 0 41 487.33821580402747 486.3309393374275 1 487.3374328613281 MULTI HCD FTMS 0 0 0 23718 22957.58984375 0.2534469149227396 6 -0.15387725830078125 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97437 NaN 19240 4481 23718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23724 94.534 NaN 26756 35 0 4883 0.261 -1 MCVFHWKLM 9 25 626.7862770250133 NaN 0 626.3132934570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MCVFHWKLM(Oxidation (M))_ ENST00000261868.9_1_15:44849833-44852464:+|nuORF 0.6014990680409731 0.29233206172879045 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.36787 0 0 597.9772648881141 503.52436243228755 1101.5016273204017 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.36787 + + 1 + NaN NaN 100277.7 NaN 19241 4481 23718 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23726 94.539 NaN 1540200 35 0 251000 0.327 + 1304 AYNDNWFITF 10 81 645.7925078670975 1289.5704628009948 2 645.7930908203125 MULTI HCD FTMS 0 0 0 23725 790125.4375 0.08495959656619871 10 -0.2530364990234375 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 117.83759599426817 4.151732338833739E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 10 0 + 97.378 0 0 7.5512 7.5512 90.586 0 0 0 10.563069105092893 77.68573490065631 10.563069105092893 9.164539485499262 0 2.60697580801237 1.0969100130080565 0.6694451763165201 1.6989700043360187 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDGGW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}NDNWWG[HK];[HD]YY{[QG]|[NA]}{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}T[QP]WNDN{[ES]|[DT]|[{I|L}C]} 7.5512;6.8406;3.4612;3.1144;1.5652 +;-;-;-;- + 547 NaN NaN 330903.3 NaN 19242 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23727 94.543 NaN 227710 35 0 20566 0.261 + 6058 FPDYKISFL 9 65 565.2988219383097 1128.5830909434194 2 565.2992553710938 MULTI HCD FTMS 0 0 0 23725 149818.984375 0.4436038224891667 -1 0.02288055419921875 2 Unmodified _FPDYKISFL_ ENST00000552266.1_1_12:56504682-56504898:+|nuORF 15.248480904072842 0.22861284681709862 2 {I|L}V{I|L}YDPE 7 8 39.443 0 0 3.4949 0 0 281.13560683418126 0 281.13560683418126 0 21.4840322369416 0 0 0 0.3494850021680094 0 0.3252574989159953 0 {I|L}V{I|L}YDPE 3.4949 - 79 NaN NaN 145638.8 NaN 19243 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23728 94.547 NaN 139350 35 0 14944 0.261 + 26933 SYLENLENLF 10 47 621.3061480719178 1240.5977432106356 2 621.3064575195312 MULTI HCD FTMS 0 0 0 23725 54756.23046875 0.4416939012529433 -1 0.02288055419921875 3 Unmodified _SYLENLENLF_ ENSG00000179715|ENST00000546455|PCED1B 62.86856922530385 0.030989390483997268 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EN{I|L}{M(Oxidation (M))|F} 10 0 + 70.143 0 0 5.654 5.654 87.229 0 0 0 4.259687322722812 63.153434601012606 4.259687322722812 9.164539485499255 0 2.6677353201839438 0 0 1.1861818737241734 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}EN{I|L}EGG{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[KP]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}[TP]EN{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}{I|L}NE[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{[SA]|[TG]}{I|L}M[{I|L}A]{[WS]|[C(Carbamidomethyl (C)){I|L}]};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}E[KQ]E[TP]{M(Oxidation (M))|F} 5.654;4.9153;3.6259;3.4815;2.8965;1.3861;1.3784 +;-;-;-;-;-;- + 278 NaN NaN 113873 NaN 19244 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23729 94.55 NaN 228710 35 0 40839 0.262 + 20457 PAPSSLPFLL 10 38 521.3023641133057 1040.5901752934112 2 521.3020629882812 MULTI HCD FTMS 0 0 0 23725 36175.21484375 0.5383004343555563 -6 0.13404083251953125 4 Unmodified _PAPSSLPFLL_ ENST00000371753.5_1_9:138902765-138903128:-|nuORF 6.2057823575117 0.44245551207394906 2 {I|L}{I|L} 2 8 20.969 0 0 2.0151 0 0 796.411927154984 0 796.411927154984 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}{I|L} 2.0151 + + 2 NaN NaN 138230.3 NaN 19245 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23730 94.553 NaN 75348 35 0 8345.7 0.261 + -1 QLLKMLKNLWR 11 43 486.9589753050584 1457.8550965153752 3 486.9593505859375 MULTI HCD FTMS 0 0 0 23725 32582.845703125 0.5250399262079583 5 -0.1309967041015625 5 Oxidation (M) _QLLKM(Oxidation (M))LKNLWR_ REV__ENSG00000068878|ENST00000404125|PSME4 0.5059551277355931 0.4167017191902429 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 121789.4 NaN 19246 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23731 94.556 NaN 128560 35 0 20115 0.261 -1 0 41 523.7805994333332 1045.5466459334664 2 524.3214721679688 MULTI HCD FTMS 0 0 0 23725 7536.36865234375 0.14223910971314715 -3 0.06536102294921875 6 NaN NaN 2 {I|L}{M(Oxidation (M))|F}R 3 -1 31.242 0 0 2.9881 0 0 0 626.2800684581648 626.2800684581648 23.17024086827658 0 0 0 0 0.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F}R 2.9881 - 44 + NaN NaN 105396.9 NaN 19247 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23732 94.56 NaN 67021 35 0 9308.5 0.261 -1 MCECSSCCW 9 29 640.1874138272684 NaN 0 639.7742919921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 4 Carbamidomethyl (C) _MC(Carbamidomethyl (C))EC(Carbamidomethyl (C))SSC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ ENST00000498611.5_1_22:50657800-50659866:-|nuORF 0 0.29524684227089293 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.31129 0 0 447.7705663246555 680.5340670221311 1128.3046333467867 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.31129 + + 1 + NaN NaN 102330.3 NaN 19248 4482 23725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23734 94.565 NaN 992990 35 0 137920 0.327 + 31426 VYASLGALLF 10 80 527.3026485312274 1052.5907441292547 2 527.302734375 MULTI HCD FTMS 0 0 0 23733 883531.5 1 0 0 1 Unmodified _VYASLGALLF_ ENSG00000178719|ENST00000395068|GRINA;ENST00000533377.1_1_8:145066406-145067006:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [YV]AS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 111.38 0 0 10.582 10.582 95.254 0 0 0 15.993624753846092 84.92992819099939 15.993624753846092 9.330984399557423 0 3.2302046884880937 1.2218487496163564 1.872363747448347 0 + + [YV]AS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F};[YV]ATVGA{I|L}{I|L}{M(Oxidation (M))|F};[YV]AS{I|L}Q{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F};[YV]ATVQ{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[TA]GA{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VTVGA{I|L}{I|L}{M(Oxidation (M))|F};{I|L}{I|L}[SG]YGA{I|L}{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VS{I|L}Q{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[QT]A{I|L}{I|L}{M(Oxidation (M))|F} 10.582;9.6951;9.4817;8.6058;8.5953;7.9174;7.7193;7.5916;7.5059;7.2968 +;-;-;-;-;-;-;-;-;- + 1256 NaN NaN 246471 NaN 19249 4483 23733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23735 94.569 NaN 494510 35 0 92279 0.261 + 26835 SYIFMPFSF 9 71 577.765099921759 1153.5156469103179 2 577.7655639648438 MULTI HCD FTMS 0 0 0 23733 142511.484375 0.8078485909049602 4 -0.10482025146484375 2 Oxidation (M) _SYIFM(Oxidation (M))PFSF_ ENSG00000197506|ENST00000376238|SLC28A3;nc|ENSG00000197506|Q9HAS3-2|SLC28A3 56.17704186161178 0.022929533404884107 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F} 9 0 + 41.985 0 0 3.6398 3.6398 82.039 0 0 0 3.424226808222059 14.09256854528806 3.424226808222059 3.424226808222059 0 1.805462187404089 0 0.3807196863200844 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}MY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{I|L}{M(Oxidation (M))|F}Y{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][YT]{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};[YV]TMY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{M(Oxidation (M))|F}TP{M(Oxidation (M))|F};[YV]{[MS]|[{M(Oxidation (M))|F}A]}Y{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{M(Oxidation (M))|F}[DC]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F};[YV]T{M(Oxidation (M))|F}[DC]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 3.6398;3.3429;2.7496;2.6549;2.5511;2.4528;0.9243;0.51201;0.47229;0.17544 +;-;-;-;-;-;-;-;-;- + 324 NaN NaN 165380 NaN 19250 4483 23733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23736 94.573 NaN 250920 35 0 51122 0.261 + 6130 FPEGLFYEF 9 59 574.7685982649667 1147.5226435967334 2 574.76904296875 MULTI HCD FTMS 0 0 0 23733 119062.015625 0.03643220316163196 46 -1.0447158813476562 3 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 56.428 0 0 4.9174 0 0 543.2695440867709 0 543.2695440867709 0 31.963950151760656 0 0 0 2 0 0.75 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4.9174 + + 85 + NaN NaN 120866.5 NaN 19251 4483 23733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23737 94.576 NaN 245040 35 0 31054 0.262 + 15924 LPNFLAVAL 9 57 479.29222513937214 956.5698973455443 2 479.2919921875 MULTI HCD FTMS 0 0 0 23733 103675.6484375 1 0 0 4 Unmodified _LPNFLAVAL_ ENSG00000147813|ENST00000449291|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-2|NAPRT;nc|ENSG00000147813|Q6XQN6-3|NAPRT 28.486842064014134 0.11819662193267319 2 V[RD]AVA{I|L} 7 5 41.503 0 0 4.3387 0 0 214.1311970441422 0 214.1311970441422 0 34.424260384580805 0 0 0 1.3807196863200843 0 0 0.3494850021680094 V[RD]AVA{I|L} 4.3387 - 118 NaN NaN 135036.9 NaN 19252 4483 23733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23738 94.579 NaN 84697 35 0 9709.6 0.261 + 2377 DPFPLYPGEVL 11 44 623.8218366025993 NaN 0 623.821044921875 PEAK HCD FTMS 0 0 0 23733 35130.3515625 1 0 0 5 Unmodified _DPFPLYPGEVL_ ENSG00000013364|ENST00000357402|MVP;ENST00000565830.5_1_16:29841852-29843003:+|nuORF 10.799506525563784 0.3114850535502259 2 Y 1 10 14.292 0 0 1.1474 0 0 569.2846511331298 510.25623499088124 1079.5408861240112 0 0 0 0 0 0.8807196863200843 0 0 0 + Y 1.1474 + + 7 + NaN NaN 107575.2 NaN 19253 4483 23733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23740 94.584 NaN 1831200 35 0 422250 0.327 + 26849 SYILDTLVF 9 83 535.7920842761478 1069.5696156190954 2 535.7922973632812 MULTI HCD FTMS 0 0 0 23739 1134241.5 1 0 0 1 Unmodified _SYILDTLVF_ ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000105576|O14787-2|TNPO2;TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant 171.46704133333822 3.0280501322097084E-09 2 [{I|L}V]TYDT{I|L}V{M(Oxidation (M))|F} 9 4 + 96.666 0 0 9.0378 9.0378 90.017 0 0 0 4.163865622122671 15.169752687851528 4.163865622122671 2.832269165698932 0 2.3494850021680094 1.2218487496163564 1.809894379144197 0 [{I|L}V]TYDT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TDYT{I|L}V{M(Oxidation (M))|F};[{I|L}V]SEYT{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]ESYT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TD{I|L}[YT]V{M(Oxidation (M))|F};[{I|L}V]SE{I|L}[YT]V{M(Oxidation (M))|F};[{I|L}V]ES{I|L}[YT]V{M(Oxidation (M))|F};[{I|L}V]TD{M(Oxidation (M))|F}{I|L}{I|L}SY;[{I|L}V]TD{I|L}{I|L}{M(Oxidation (M))|F}SY 9.0378;8.773;8.7228;8.6485;8.6364;5.0713;5.0211;4.9347;3.2645;3.2217 -;-;-;+;-;-;-;-;-;- + 1300 NaN NaN 369696.2 NaN 19254 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23741 94.589 NaN 752270 35 0 126270 0.261 + -1 IYIDCAFDLG 10 78 593.7753874967098 1185.5362220602194 2 593.7754516601562 MULTI HCD FTMS 0 0 0 23739 312985.65625 0.8599968177972546 1 -0.03623199462890625 2 Carbamidomethyl (C) _IYIDC(Carbamidomethyl (C))AFDLG_ REV__ENSG00000153563|ENST00000283635|CD8A;REV__nc|ENSG00000153563|P01732-3|CD8A 14.838274106304384 0.3723198072575719 2 {I|L}Y{I|L}[MD]V[NG]D{M(Oxidation (M))|F} 10 -1 + 55.423 0 0 4.675 4.675 87.451 0 0 0 32.70689673945462 2.988409243291059 2.988409243291059 10.268024924119672 0 1.6549471895720984 1.6989700043360187 0 0 {I|L}Y{I|L}[MD]V[NG]D{M(Oxidation (M))|F};{I|L}Y[MD]{I|L}V[NG]D{M(Oxidation (M))|F};{I|L}Y{I|L}[C(Carbamidomethyl (C))S]V[DG]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4.675;3.8089;3.7613 -;-;- 189 + NaN NaN 210285.9 NaN 19255 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23742 94.592 NaN 376440 35 0 42368 0.261 + 5920 FPDLPFTDEL 10 62 597.2900039939598 1192.5654550547195 2 597.2894897460938 MULTI HCD FTMS 0 0 0 23739 127086.0859375 0.6492106873196334 1 -0.03623199462890625 3 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 66.45667989310934 0.021783857413937163 2 {[QN]|[E{I|L}]|[KN]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PPDE{I|L} 10 6 + 56.045 0 0 4.6996 4.6996 90.44 0 0 0 1.7040394002434596 46.35255419600028 1.7040394002434596 34.09097005026964 0 1.8193415193665468 0 0.9947026752325154 0 {[QN]|[E{I|L}]|[KN]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}PPDE{I|L};{[QN]|[E{I|L}]|[KN]}D[HA]H{[ET]|[MV]}E{I|L};{[QN]|[E{I|L}]|[KN]}DT{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[ET]|[MV]}E{I|L};{[QN]|[E{I|L}]|[KN]}D[W{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]}E{I|L};{[QN]|[E{I|L}]|[KN]}DT[MT]{[QN]|[E{I|L}]|[KN]}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[W{M(Oxidation (M))|F}]{[QN]|[E{I|L}]|[KN]}E{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}T[MT]{[QN]|[E{I|L}]|[KN]}E{I|L} 4.6996;1.8409;1.7184;1.6933;1.5324;1.4409;1.28 -;-;-;-;-;-;- 220 NaN NaN 149457 NaN 19256 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23743 94.596 NaN 295110 35 0 34865 0.262 + 31968 VYPGLAVFF 9 51 506.7789097301395 1011.543266527079 2 506.7789611816406 MULTI HCD FTMS 0 0 0 23739 152673.5 0.09820948061276435 12 -0.295623779296875 4 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 67.41302359171755 0.009925318700911543 2 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 51.186 0 0 5.0602 0 0 529.2896833719798 0 529.2896833719798 0 41.50296836376668 0 0 0 1.9247425010840047 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0602 + + 53 NaN NaN 133498.8 NaN 19257 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23744 94.599 NaN 287670 35 0 35683 0.261 + 463 ALPSQFVVP 9 50 479.2733376749538 956.5321224167076 2 479.2731628417969 MULTI HCD FTMS 0 0 0 23739 118214.1796875 0.733550895914935 1 -0.03623199462890625 5 Unmodified _ALPSQFVVP_ ENSG00000157423|ENST00000393567|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF;nc|ENSG00000157423|Q4G0P3-2|HYDIN 9.347437153973935 0.2795965555214564 2 [{I|L}T]VWRVA 7 7 31.514 0 0 3.2947 0 0 0 128.03458890539926 128.03458890539926 15.316526695878423 0 0 0 0 0 1.3010299956639813 0 0 [{I|L}T]VWRVA 3.2947 - 161 NaN NaN 151684.9 NaN 19258 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23745 94.602 NaN 423820 35 0 117040 0.261 + 10418 IPADIVFVL 9 40 493.79970955712827 985.5848661810566 2 493.7998352050781 MULTI HCD FTMS 0 0 0 23739 190002.453125 0.2255693381918165 -7 0.156890869140625 6 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 2 V{M(Oxidation (M))|F}V{I|L} 4 5 43.686 0 0 4.4325 0 0 509.28581065802274 0 509.28581065802274 0 43.68562527100117 0 0 0 1.3252574989159953 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.4325 + + 14 NaN NaN 170319 NaN 19259 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23746 94.606 NaN 444520 35 0 119440 0.261 + 6291 FPFNPLDF 8 59 498.744888759462 995.475224585724 2 498.7449951171875 MULTI HCD FTMS 0 0 0 23739 245168.78125 0.34447346157541153 -5 0.111083984375 7 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 32.30548876998284 0.3297748069446609 2 NP{I|L}D{M(Oxidation (M))|F} 5 3 45.433 0 0 4.564 0 0 391.1890125959 0 391.1890125959 0 18.320012887743786 0 0 0 1.5 0 0 0 + NP{I|L}D{M(Oxidation (M))|F} 4.564 + + 176 NaN NaN 174455.1 NaN 19260 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23747 94.609 NaN 111440 35 0 22631 0.262 + -1 FECYCCDC 8 31 405.1189975575329 NaN 0 405.1189880371094 PEAK HCD FTMS 0 0 0 23739 61405.359375 0.5989816250195662 1 -0.03623199462890625 8 4 Carbamidomethyl (C) _FEC(Carbamidomethyl (C))YC(Carbamidomethyl (C))C(Carbamidomethyl (C))DC(Carbamidomethyl (C))_ REV__ENSG00000125386|ENST00000637812|FAM193A;REV__ENSG00000146067|ENST00000514747|FAM193B;REV__ENST00000506955.5_1_5:176959168-176966109:-|nuORF;REV__ENST00000510479.5_1_5:176959168-176964941:-|nuORF;REV__nc|ENSG00000125386|P78312-2|FAM193A;REV__nc|ENSG00000125386|P78312-4|FAM193A;REV__nc|ENSG00000125386|P78312-5|FAM193A;REV__nc|ENSG00000125386|P78312-6|FAM193A;REV__nc|ENSG00000125386|P78312|FAM193A;REV__nc|ENSG00000146067|Q96PV7|FAM193B 0.45834013312273997 0.38822285293237185 2 V 1 -1 0.9691 0 0 0.1199 0 0 422.04862025979395 284.07773767642817 706.1263579362221 0 0 0 0 0 0 0 0 0 V 0.1199 - 1 + NaN NaN 104777 NaN 19261 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23748 94.612 NaN 155750 35 0 28151 0.261 -1 0 43 523.7805994333332 1045.5466459334664 2 523.7806396484375 MULTI HCD FTMS 0 0 0 23739 65833.015625 0.5694567727850429 -4 0.08484649658203125 9 NaN NaN 2 {I|L}{M(Oxidation (M))|F}R 3 -1 34.253 0 0 3.276 0 0 0 626.2796114557249 626.2796114557249 14.78855930516417 0 0 0 0 0.805462187404089 0 0 0 {I|L}{M(Oxidation (M))|F}R 3.276 - 47 + NaN NaN 128258.5 NaN 19262 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23749 94.616 NaN 78109 35 0 6644.3 0.261 -1 0 41 489.27455846500334 488.26728199840335 1 490.2827453613281 MULTI HCD FTMS 0 0 0 23739 18925.037109375 0.7323165799818644 1 -0.03623199462890625 10 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 113932.6 NaN 19263 4484 23739 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23751 94.62 NaN 3402600 35 0 874090 0.327 + 11141 IYIPSYFDF 9 100 582.7842552525641 1163.553957571928 2 582.7845458984375 MULTI HCD FTMS 0 0 0 23750 1945161.375 0.9506039713500981 1 -0.0195159912109375 1 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 170.55093314911917 3.526520053928E-09 2 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}] + + 85.398 22.218 8.0458 7.3394 7.3394 66.246 0 0 0 0 57.91856991555731 0 0 0 2.805462187404089 0 1.7658715643802765 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 7.3394 + + 956 + NaN NaN 611723.4 NaN 19264 4485 23750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23752 94.625 NaN 1971600 35 0 284770 0.261 + 6061 FPDYLVIQI 9 75 554.3077896488119 1106.6010263644237 2 554.30810546875 MULTI HCD FTMS 0 0 0 23750 2444862.75 0.92155991724342 2 -0.049041748046875 2 Unmodified _FPDYLVIQI_ ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;ENST00000541969.1_1_12:6969646-6972391:+|nuORF;nc|ENSG00000111667|P45974-2|USP5 88.95385435242217 0.004553379958619559 2 Y{I|L}V{I|L}Q{I|L} 6 3 61.604 0 0 5.567 0 0 359.1476002423844 0 359.1476002423844 0 44.2919951248829 0 0 0 2.2302046884880937 0 0 0.3807196863200844 + Y{I|L}V{I|L}Q{I|L} 5.567 + + 196 NaN NaN 399755.6 NaN 19265 4485 23750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23753 94.628 NaN 3478900 35 0 756030 0.261 + 6095 FPEEVIATIF 10 85 583.3103290180842 1164.6061051029683 2 583.3096313476562 MULTI HCD FTMS 0 0 0 23750 436930.5 1 0 0 3 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 47.748688679222035 0.08597705450879027 2 PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 8 54.672 0 0 4.6945 0 0 390.28407130551994 0 390.28407130551994 0 11.919628234359578 0 0 0 0.3807196863200844 0 1.4489700043360187 0 PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4.6945 - 622 + NaN NaN 617583.9 NaN 19266 4485 23750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23754 94.632 NaN 691000 35 0 96819 0.261 + 16805 LYEADFVLF 9 69 558.7840722874704 1115.5535916417407 2 558.7841796875 MULTI HCD FTMS 0 0 0 23750 279493.65625 0.8120158005301101 2 -0.049041748046875 4 Unmodified _LYEADFVLF_ ENSG00000136213|ENST00000618655|CHST12 81.61307344734483 0.005330412723537057 2 [Y{I|L}]EAD{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 9 0 + 76.609 0 0 6.8674 6.8674 94.383 0 0 0 4.137342758552691 56.01342204748164 4.137342758552691 43.05707240970889 0 2.805462187404089 0 0.7742275032520141 0 + + [Y{I|L}]EAD{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[YG]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6.8674;3.0077 +;- + 494 NaN NaN 203343.5 NaN 19267 4485 23750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23755 94.635 NaN 100950 35 0 15718 0.261 + 32767 WRNRQKNKRR 10 48 481.2836084473159 1440.8289959421477 3 481.28338623046875 MULTI HCD FTMS 0 0 0 23750 42859.53515625 0.28650705647635655 -22 0.5385055541992188 5 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 2 [{M(Oxidation (M))|F}V]SE 4 10 7.167 0 0 0.49742 0 0 0 975.584677665057 975.584677665057 0.1772876696043122 0 0 0 0 0 0 0 0 [{M(Oxidation (M))|F}V]SE 0.49742 - 20 NaN NaN 119438.4 NaN 19268 4485 23750 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23757 94.64 NaN 1614900 35 0 372820 0.327 -1 LFNLIDTF 8 69 512.7721352362807 NaN 0 512.7894897460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFNLIDTF_ ENSG00000101955|ENST00000378533|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;SRPX|p.R448G|1|0.11|ENSG00000101955|chrX:38149764-38149764|T/C|missense_variant 32.116972079565 0.3772972708913157 2 {M(Oxidation (M))|F}R{I|L}{I|L}DT 6 -1 38.097 0 0 3.7221 0 0 113.08388594966739 162.05611597232658 275.140001921994 0 0 0 0 0 0 0 1.774227503252014 0 {M(Oxidation (M))|F}R{I|L}{I|L}DT 3.7221 - 189 + NaN NaN 338645.6 NaN 19269 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23758 94.644 NaN 437420 35 0 185000 0.261 + 33106 YDTAEDEFI 9 28 551.7329577963087 1101.4513626594173 2 551.7334594726562 MULTI HCD FTMS 0 0 0 23756 336713.6875 0.7211792686523189 3 -0.07859039306640625 2 Unmodified _YDTAEDEFI_ tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1 21.74664581756881 0.17247014374749275 2 E{M(Oxidation (M))|F}{I|L} 3 6 40.445 0 0 3.672 0 0 694.2459583966812 0 694.2459583966812 0 34.9607625286837 0 0 0 1 0 0.4247425010840047 0 + E{M(Oxidation (M))|F}{I|L} 3.672 + + 10 NaN NaN 166312.6 NaN 19270 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23759 94.648 NaN 541690 35 0 29180 0.262 -1 0 100 451.93261201226846 1352.7760066370054 3 451.9325866699219 MULTI HCD FTMS 0 0 0 23756 321051.34375 0.5252252350814797 26 -0.619110107421875 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.783 0 0 0.871 0 0 1187.6973608623944 0 1187.6973608623944 0 -3.944088479991361 -3.944088479991361 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.871 - 90 + NaN NaN 197090.7 NaN 19271 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23760 94.651 NaN 1361500 35 0 342050 0.261 + 11291 IYLTFPVAMF 10 71 609.3174773071619 1216.6204016811237 2 609.3173828125 MULTI HCD FTMS 0 0 0 23756 403158.3125 0.27340327244728774 -5 0.12435150146484375 4 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 121.52 0 0 9.9885 9.9885 91.867 0 0 0 22.754537344402905 110.00630971391878 22.754537344402905 5.76606256887672 0 3.055462187404089 1.6989700043360187 1.8851518780601921 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9.9885;9.5145;8.4896;5.4665;5.032;4.4329 +;-;-;-;-;- + 612 NaN NaN 318344 NaN 19272 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23761 94.655 NaN 337600 35 0 32486 0.261 + 5796 FPATVLWEL 9 57 538.2944089029704 1074.5742648727407 2 538.2940063476562 MULTI HCD FTMS 0 0 0 23756 97332.8984375 0.3184581380237955 -9 0.21263885498046875 5 Unmodified _FPATVLWEL_ ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;nc|ENSG00000155363|Q9HCE1-2|MOV10 24.020572477871973 0.15282392193088168 2 VY[RP]{I|L}W 6 7 47.33 0 0 4.4045 0 0 0 257.1140535943969 257.1140535943969 25.875912339897198 0 0 0 0 1.6861818737241734 1.5228787452803376 0 0 VY[RP]{I|L}W 4.4045 - 152 + NaN NaN 149286.2 NaN 19273 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23762 94.658 NaN 264190 35 0 51050 0.261 + 18022 MLLHADGDF 9 43 509.7360768574433 1017.4576007816867 2 509.7358703613281 MULTI HCD FTMS 0 0 0 23756 76283.3984375 0.570507120036833 -5 0.12435150146484375 6 Unmodified _MLLHADGDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 21.74664581756881 0.17247014374749275 2 {I|L}DD{M(Oxidation (M))|F}PE 6 -1 28.505 0 0 2.8016 0 0 283.11531264472814 0 283.11531264472814 0 2.05136871872881 0 0 0 0.4247425010840047 0 0.4247425010840047 0 {I|L}DD{M(Oxidation (M))|F}PE 2.8016 - 30 NaN NaN 138259 NaN 19274 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23763 94.661 NaN 138670 35 0 17753 0.261 + -1 YLLNCVFFC 9 59 589.7737886922642 1177.5330244513284 2 589.7738037109375 MULTI HCD FTMS 0 0 0 23756 31416.755859375 0.5775006246984214 2 -0.05242156982421875 7 Carbamidomethyl (C) _YLLNCVFFC(Carbamidomethyl (C))_ REV__ENSG00000213996|ENST00000389363|TM6SF2 13.50788311687929 0.24365122550260465 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3 -1 31.995 0 0 2.7171 0 0 750.3593617169937 0 750.3593617169937 0 2.8135721093547517 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F} 2.7171 - 150 NaN NaN 113163 NaN 19275 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23764 94.665 NaN 233670 35 0 35424 0.262 -1 QIQTNLIM 8 51 488.7607166889807 NaN 0 488.7608642578125 PEAK HCD FTMS 0 0 0 23756 13595.3681640625 0.5084256406806629 1 -0.0295257568359375 8 Oxidation (M) _QIQTNLIM(Oxidation (M))_ ENST00000316059.6_1_11:58352348-58378460:+|nuORF 10.073929032068715 0.38822285293237185 2 {I|L}V 2 -1 20.969 0 0 2.1496 0 0 128.05914369761973 632.2729857497413 760.332129447361 0 0 0 0 0 1 0 0 0 {I|L}V 2.1496 - 7 + NaN NaN 125193.5 NaN 19276 4486 23756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23766 94.67 NaN 435200 35 0 57491 0.327 + 34502 YPFLLVGDLM 10 60 592.3073986493324 1182.6002443654647 2 592.3074340820312 MULTI HCD FTMS 0 0 0 23765 180458.984375 0.25451368639325733 16 -0.37046051025390625 1 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 88.90359156742426 0.0010865658313541904 2 [Y{I|L}]SW{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 9 6 + 82.022 0 0 6.9357 6.9357 95.373 0 0 0 8.88112785045223 56.07025447340727 8.88112785045223 82.0220519429403 0 1.6694451763165201 1.5228787452803376 0.8494850021680094 0 [Y{I|L}]SW{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.9357 - 402 NaN NaN 157276.9 NaN 19277 4487 23765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23767 94.674 NaN 454850 35 0 56197 0.261 + 5143 FEVPPEKVF 9 73 546.2922339000502 1090.5699148669003 2 546.7836303710938 MULTI HCD FTMS 0 0 0 23765 5830.50634765625 0.33237024483811806 -3 0.08527374267578125 2 Unmodified _FEVPPEKVF_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-11|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-4|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-7|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 16.942295170755138 0.21397866736869717 2 TD{I|L}{I|L}[KC] 6 -1 24.922 0 0 2.2852 0 0 399.2132740705094 0 399.2132740705094 0 2.9491276745547523 0 0 0 0 0 0 0 TD{I|L}{I|L}[KC] 2.2852 - 301 NaN NaN 158653.3 NaN 19278 4487 23765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23768 94.678 NaN 313230 35 0 14881 0.262 + 30947 VRLREISEQIK 11 77 457.60827744250093 1369.803002927703 3 457.6081237792969 MULTI HCD FTMS 0 0 0 23765 144073.703125 0.3897528913653791 22 -0.52093505859375 3 Unmodified _VRLREISEQIK_ REV__ENSG00000100336|ENST00000683024|APOL4;REV__nc|ENSG00000100336|Q9BPW4-3|APOL4;REV__nc|ENSG00000100336|Q9BPW4|APOL4 1.0135738785822086 0.41447547578978133 2 A 1 -1 4.6041 0 0 0.33611 0 0 105.08009742591078 1190.6706491485488 1295.7507465744595 0 0 0 0 0 0 0 0 0 A 0.33611 - 33 + NaN NaN 149020.5 NaN 19279 4487 23765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23769 94.681 NaN 596000 35 0 64431 0.261 + 5864 FPDFPTPGVVF 11 64 611.8110145244015 1221.6074761156028 2 611.8108520507812 MULTI HCD FTMS 0 0 0 23765 58191.66015625 0.0100347187494207 -34 0.7381057739257812 4 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 21.536976647645854 0.2694300281126922 2 WV{M(Oxidation (M))|F} 3 9 29.693 0 0 2.4306 0 0 771.3881703107437 0 771.3881703107437 0 17.4130337288954 0 0 0 0.5 0 0 0 WV{M(Oxidation (M))|F} 2.4306 - 118 NaN NaN 180233.6 NaN 19280 4487 23765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23770 94.684 NaN 130130 35 0 12905 0.261 + 13676 KYPENFFLL 9 41 585.8134552789435 NaN 0 585.813720703125 PEAK HCD FTMS 0 0 0 23765 68864.6171875 0.7802827623660402 -13 0.317535400390625 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {M(Oxidation (M))|F} 1 8 11.99 0 0 1.0251 0 0 778.3665518158963 241.15584741763908 1019.5223992335353 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.0251 + + 4 + NaN NaN 126057.7 NaN 19281 4487 23765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23771 94.687 NaN 115090 35 0 26637 0.263 + 32938 YAIDRQSG 8 45 455.22536699003615 NaN 0 455.2254333496094 PEAK HCD FTMS 0 0 0 23765 25612.455078125 0.5371456778367134 27 -0.6387100219726562 6 Unmodified _YAIDRQSG_ REV__ENSG00000108510|ENST00000397786|MED13;REV__MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 6.354104778181461 0.38822285293237185 2 {I|L} 1 -1 1.5938 0 0 0.17544 0 0 561.2515629822224 231.07720361881096 792.3287666010333 0 0 0 0 0 0 0 0 0 {I|L} 0.17544 + + 3 + NaN NaN 102183.2 NaN 19282 4487 23765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23773 94.692 NaN 741030 35 0 115290 0.326 + 1305 AYNDNWFITF 10 66 645.7925078670975 1289.5704628009948 2 645.7930908203125 MULTI HCD FTMS 0 0 0 23772 345985.65625 0.03720270273249051 16 -0.37042999267578125 1 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 90.13494162714682 0.000992056157953851 2 NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 6 4 76.701 0 0 5.9478 0 0 463.1689625470719 0 463.1689625470719 0 56.868128451160516 0 0 0 1.9247425010840047 0 0 1.9802046884880937 + NW{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5.9478 + + 214 NaN NaN 218306.6 NaN 19283 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23774 94.697 NaN 369470 35 0 69551 0.261 + 5962 FPDQFFTVL 9 61 557.284424543777 1112.554296154354 2 557.2844848632812 MULTI HCD FTMS 0 0 0 23772 245437.78125 0.9572765549784357 -1 0.02289581298828125 2 Unmodified _FPDQFFTVL_ ENSG00000186020|ENST00000591340|ZNF529;ENST00000334116.7_2_19:37042871-37064163:-|nuORF 32.78568957990786 0.09846250359632436 2 {M(Oxidation (M))|F}TV{I|L} 4 5 52.735 0 0 4.74 0 0 634.2750346286145 0 634.2750346286145 0 21.755828144472034 0 0 0 1.4247425010840047 0 0.805462187404089 0 + {M(Oxidation (M))|F}TV{I|L} 4.74 + + 234 NaN NaN 142985 NaN 19284 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23775 94.7 NaN 600070 35 0 94583 0.261 + 35520 YYGDVIWVI 9 65 564.2920080205201 1126.5694631078402 2 564.2920532226562 MULTI HCD FTMS 0 0 0 23772 190713.5625 1 0 0 3 Unmodified _YYGDVIWVI_ ENSG00000196821|ENST00000374023|ILRUN;ENST00000453101.1_1_2:106961501-106961627:+|nuORF 21.74664581756881 0.17247014374749275 2 {I|L}WV{I|L} 4 5 46.186 0 0 4.0997 0 0 597.2428776358955 0 597.2428776358955 0 22.23320034371433 0 0 0 1.4247425010840047 0 0 0 + {I|L}WV{I|L} 4.0997 + + 172 NaN NaN 190791.5 NaN 19285 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23776 94.704 NaN 413400 35 0 106770 0.261 -1 0 58 504.79087231608753 1007.5671916989751 2 504.7908935546875 MULTI HCD FTMS 0 0 0 23772 150289.9375 0.8797883288344888 -3 0.07193756103515625 4 NaN NaN 2 {I|L}PAD 4 -1 59.412 0 0 5.8966 0 0 0 608.3416231744749 608.3416231744749 50.43305028184122 0 0 0 0 0.8494850021680094 1.6989700043360187 0.3494850021680094 0 {I|L}PAD 5.8966 - 34 + NaN NaN 153871.5 NaN 19286 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23777 94.707 NaN 183460 35 0 30308 0.261 -1 LYLMIPGTVGC 11 52 620.3082305409291 1238.6019081486581 2 620.3082275390625 MULTI HCD FTMS 0 0 0 23772 115757.875 0.85011324509801 -3 0.07193756103515625 5 Carbamidomethyl (C),Oxidation (M) _LYLM(Oxidation (M))IPGTVGC(Carbamidomethyl (C))_ ENSG00000158296|ENST00000279027|SLC13A3;nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3 13.042465956692817 0.3434429782671734 2 {I|L}Y{I|L}T{M(Oxidation (M))|F} 5 -1 61.938 0 0 5.0007 0 0 0 598.2303560846311 598.2303560846311 38.43318134631147 0 0 0 0 1 1.6989700043360187 0 0 {I|L}Y{I|L}T{M(Oxidation (M))|F} 5.0007 - 53 + NaN NaN 119819.7 NaN 19287 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23778 94.71 NaN 308060 35 0 45964 0.261 + 12290 KLPALFFLF 9 66 548.3339078536726 1094.653262774145 2 548.3336791992188 MULTI HCD FTMS 0 0 0 23772 110280.546875 0.8323588218214788 -3 0.07193756103515625 6 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 57.47134341890925 0.0211188941628804 2 [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 59.332 0 0 5.4201 5.4201 92.411 0 0 0 1.0160559578984163 47.91711216645645 1.0160559578984163 59.331524890260994 0 2.6989700043360187 0 0 0 + + [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.4201 + + 376 NaN NaN 146006.7 NaN 19288 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23779 94.714 NaN 175760 35 0 24058 0.261 + 3377 EERRDKTE 8 67 531.7628211270796 1061.5110893209592 2 531.762939453125 MULTI HCD FTMS 0 0 0 23772 33049.69140625 0.8351556963770855 3 -0.07958984375 7 Unmodified _EERRDKTE_ REV__ENST00000600534.1_1_19:59085032-59085281:+|nuORF 12.531546534597751 0.5015908124873912 2 DTE 3 -1 31.867 0 0 3.002 0 0 698.3666249005875 0 698.3666249005875 0 9.5156981316015 0 0 0 0 0 0.805462187404089 0 DTE 3.002 - 86 NaN NaN 140431.8 NaN 19289 4488 23772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23781 94.719 NaN 256300 35 0 24408 0.327 + 31427 VYASLGALLF 10 63 527.3026485312274 1052.5907441292547 2 527.3026123046875 MULTI HCD FTMS 0 0 0 23780 109289.859375 0.12369661905093367 6 -0.1483306884765625 1 Unmodified _VYASLGALLF_ ENSG00000178719|ENST00000395068|GRINA;ENST00000533377.1_1_8:145066406-145067006:+|nuORF 100.37149154755038 0.000206371386929769 2 [YV]AS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F} 10 0 + 70.526 0 0 6.7002 6.7002 86.455 0 0 0 3.7751372576825304 60.884315473529185 3.7751372576825304 3.0372751160733458 0 2.7302046884880937 0 0.8609243748081783 0 + + [YV]AS{I|L}GA{I|L}{I|L}{M(Oxidation (M))|F};[YV]AS{I|L}Q{I|L}{I|L}{M(Oxidation (M))|F};[YV]AS{I|L}Q{I|L}{M(Oxidation (M))|F}{I|L};[YV]V[TA]GA{I|L}{I|L}{M(Oxidation (M))|F};[YV]AS{I|L}GA{I|L}{M(Oxidation (M))|F}{I|L};[Q{I|L}]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}A{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[TA]Q{I|L}{I|L}{M(Oxidation (M))|F};[YV]V[QT]A{I|L}{I|L}{M(Oxidation (M))|F};[Q{I|L}]{[DS]|[MA]|[CV]|TT}{M(Oxidation (M))|F}A{I|L}{M(Oxidation (M))|F}{I|L};[YV]V[TA]Q{I|L}{M(Oxidation (M))|F}{I|L} 6.7002;6.4116;5.0827;5.0263;5.0096;4.7838;4.7377;4.6917;3.4549;3.4088 +;-;-;-;-;-;-;-;-;- + 620 NaN NaN 143010.9 NaN 19290 4489 23780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23782 94.723 NaN 198610 35 0 14874 0.261 + 11192 IYIWDLNNF 9 69 599.3004998777495 1196.586446822299 2 599.3009033203125 MULTI HCD FTMS 0 0 0 23780 87960.4609375 0.01593083001299399 46 -1.0374908447265625 2 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 110.6747026088012 0.0028322563155251486 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 98.624 0 0 8.2422 8.2422 92.392 0 0 0 7.967203307072737 7.967203307072737 7.967203307072737 9.208187539523749 0 2.7302046884880937 1.5228787452803376 0 0.75 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{[RE]|[WV]}{[QN]|[E{I|L}]|[KN]}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}[YE][HV]N{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[HG]|PP}[KP]VGNN{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[HG]|PP}[KP]RNN{M(Oxidation (M))|F} 8.2422;7.4726;7.1177;6.0799;4.3396;2.7863;2.2743;2.1235 +;-;-;-;-;-;-;- + 599 NaN NaN 136938.5 NaN 19291 4489 23780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23783 94.727 NaN 155720 35 0 33744 0.261 + 6131 FPEGLFYEF 9 49 574.7685982649667 1147.5226435967334 2 574.7686157226562 MULTI HCD FTMS 0 0 0 23780 76783.3671875 0.02349521145030746 52 -1.1552886962890625 3 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 49.993 0 0 4.3566 0 0 543.2684550172862 0 543.2684550172862 0 49.992822134202015 0 0 0 1.805462187404089 0 0 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4.3566 + + 43 NaN NaN 120189.3 NaN 19292 4489 23780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23784 94.73 NaN 59880 35 0 4826.6 0.262 + -1 QLLKMLKNLWR 11 44 486.9590278463644 1457.8552541392933 3 486.9590148925781 MULTI HCD FTMS 0 0 0 23780 29749.806640625 0.3596199723351472 -21 0.5169448852539062 4 Oxidation (M) _QLLKM(Oxidation (M))LKNLWR_ REV__ENSG00000068878|ENST00000404125|PSME4 0.5059551277355931 0.4167017191902429 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92968.8 NaN 19293 4489 23780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23785 94.733 NaN 183540 35 0 20168 0.261 + 16640 LWDFGYTCR 9 50 580.7637743325029 1159.5129957318056 2 580.287841796875 MULTI HCD FTMS 0 0 0 23780 33043.5234375 0.3250197202472091 6 -0.1483306884765625 5 Unmodified _LWDFGYTCR_ nc|ENSG00000182931|Q8IUB3-2|WFDC10B 4.3292370932331545 0.3181982124262546 2 A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 3 8 5.9421 0 0 0.51247 0 0 776.3622521788744 0 776.3622521788744 0 -1.0475750727131565 -1.0475750727131565 0 0 0 0 0 0 A{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 0.51247 - 29 + NaN NaN 113214.6 NaN 19294 4489 23780 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23787 94.738 NaN 1025900 35 0 306520 0.327 + 6292 FPFNPLDF 8 56 498.744888759462 995.475224585724 2 498.74505615234375 MULTI HCD FTMS 0 0 0 23786 597338.25 0.8392878312637881 1 -0.03380584716796875 1 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 37.97399986684836 0.256956040331741 2 NP{I|L}D{M(Oxidation (M))|F} 5 3 54.196 0 0 5.4442 0 0 391.18881903015824 0 391.18881903015824 0 24.018637558036673 0 0 0 1.9247425010840047 0 0 0 + NP{I|L}D{M(Oxidation (M))|F} 5.4442 + + 272 NaN NaN 249470.9 NaN 19295 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23788 94.743 NaN 1114700 35 0 356660 0.261 + 10419 IPADIVFVL 9 51 493.79970955712827 985.5848661810566 2 493.7998046875 MULTI HCD FTMS 0 0 0 23786 716978.1875 0.8511905640815295 -1 0.01961517333984375 2 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 36.04419817259434 0.08350412372117409 2 V{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.6861 0 0 509.28412630743117 0 509.28412630743117 0 39.195925227640984 0 0 0 1.4247425010840047 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.6861 + + 56 NaN NaN 267514.3 NaN 19296 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23789 94.746 NaN 279570 35 0 34962 0.261 + 5921 FPDLPFTDEL 10 52 597.2900039939598 1192.5654550547195 2 597.2897338867188 MULTI HCD FTMS 0 0 0 23786 120412.5390625 0.6151193238031801 7 -0.17781829833984375 3 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 43.77239144664712 0.11267038882370725 2 DP{M(Oxidation (M))|F}TDE{I|L} 7 3 57.115 0 0 4.7893 0 0 357.2025624005875 0 357.2025624005875 0 46.14593550382132 0 0 0 1.805462187404089 0 0 0 DP{M(Oxidation (M))|F}TDE{I|L} 4.7893 - 135 NaN NaN 143587 NaN 19297 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23790 94.75 NaN 390000 35 0 51136 0.261 + -1 LYMLFMEIL 9 76 594.8036742630924 NaN 0 594.8189086914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _LYM(Oxidation (M))LFMEIL_ REV__ENST00000487532.5_1_1:45424435-45452248:-|nuORF 13.50788311687929 0.22978952576613207 2 {I|L}Y{M(Oxidation (M))|F}E 4 -1 12.423 0 0 1.046 0 0 131.06498769962496 501.2496431940063 632.3146308936313 0 0 0 0 0 0 0 0 0 {I|L}Y{M(Oxidation (M))|F}E 1.046 - 157 + NaN NaN 163908.8 NaN 19298 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23791 94.753 NaN 66710 35 0 11571 0.261 -1 WCGWEIRKL 9 37 624.3226424457239 NaN 0 624.322265625 PEAK HCD FTMS 0 0 0 23786 27716.517578125 0.7755698235753522 1 -0.03380584716796875 5 Carbamidomethyl (C) _WC(Carbamidomethyl (C))GWEIRKL_ ENST00000415640.1_1_2:39873446-39873512:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96009.9 NaN 19299 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23792 94.756 NaN 299950 35 0 30805 0.262 + 15114 LMIYRFCL 8 58 529.7803786289137 1057.5462043246273 2 529.7800903320312 MULTI HCD FTMS 0 0 0 23786 71157.390625 0.2745414345349744 -5 0.1177215576171875 6 Unmodified _LMIYRFCL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense 24.67388899826682 0.4122521268485776 2 {I|L}M{I|L}AEV 6 5 61.38 0 0 5.804 0 0 0 398.16831384830317 398.16831384830317 43.82576888900239 0 0 0 0 1.0189301784845295 2 0.3054621874040891 0 {I|L}M{I|L}AEV 5.804 - 118 + NaN NaN 137419.6 NaN 19300 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23793 94.76 NaN 131450 35 0 16868 0.261 + 14658 LGMMPVFFVL 10 56 577.3109326123854 1152.6073122915707 2 577.3115234375 MULTI HCD FTMS 0 0 0 23786 26239.65234375 0.4230987501319556 7 -0.17781829833984375 7 Unmodified _LGMMPVFFVL_ REV__ENSG00000184698|ENST00000642046|OR51M1 12.531546534597751 0.39389615866941496 2 [Y{I|L}][EP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}V 8 -1 27.669 0 0 2.4005 0 0 0 128.07394966238374 128.07394966238374 9.152099703523469 0 0 0 0 1.1549471895720984 2 0 0 [Y{I|L}][EP]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}V 2.4005 - 53 NaN NaN 116970.6 NaN 19301 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23794 94.764 NaN 74955 35 0 13584 0.261 + -1 YLLNCVFFC 9 44 589.7737886922642 1177.5330244513284 2 589.7763671875 MULTI HCD FTMS 0 0 0 23786 23571.37109375 0.4332873067025114 6 -0.14167022705078125 8 Carbamidomethyl (C) _YLLNCVFFC(Carbamidomethyl (C))_ REV__ENSG00000213996|ENST00000389363|TM6SF2 8.593279151180031 0.2858735984551981 2 YYT 3 -1 20.942 0 0 1.7785 0 0 0 747.337351193769 747.337351193769 8.022562268522577 0 0 0 0 0 2 0 0 YYT 1.7785 - 37 NaN NaN 103054.8 NaN 19302 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23795 94.767 NaN 74300 35 0 7087.2 0.262 + 22676 QWRKLLKMAQL 11 47 472.28353657351613 1413.8287803207484 3 472.61767578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _QWRKLLKMAQL_ ENST00000494558.5_1_3:150276231-150281349:+|nuORF 0.5059551277355931 0.4167017191902429 2 [Y{I|L}][PA][{I|L}A]W 7 9 9.8318 0 0 0.6954 0 0 0 596.3698235260497 596.3698235260497 8.722511315243336 0 0 0 0 0 2 0 0 [Y{I|L}][PA][{I|L}A]W 0.6954 - 9 NaN NaN 97147.4 NaN 19303 4490 23786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23797 94.772 NaN 1128200 35 0 189330 0.327 + 6062 FPDYLVIQI 9 71 554.3077896488119 1106.6010263644237 2 554.3080444335938 MULTI HCD FTMS 0 0 0 23796 782691.875 0.29502574717214586 8 -0.18952178955078125 1 Unmodified _FPDYLVIQI_ ENSG00000111667|ENST00000229268|USP5;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;ENST00000541969.1_1_12:6969646-6972391:+|nuORF;nc|ENSG00000111667|P45974-2|USP5 69.10491478415734 0.009377850133389008 2 Y{I|L}V{I|L}Q{I|L} 6 3 57.638 0 0 5.2086 0 0 359.14753920722814 0 359.14753920722814 0 39.534021960761265 0 0 0 2.1747425010840047 0 0 0 + Y{I|L}V{I|L}Q{I|L} 5.2086 + + 120 NaN NaN 265517.1 NaN 19304 4491 23796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23798 94.776 NaN 911150 35 0 200660 0.261 + 11142 IYIPSYFDF 9 60 582.7842552525641 1163.553957571928 2 582.784423828125 MULTI HCD FTMS 0 0 0 23796 452795 0.2212817562283066 7 -0.15362548828125 2 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 112.59319219568356 0.00251905749371435 2 [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 9 0 [Y{I|L}] + + 69.136 22.218 8.0457 5.9418 5.9418 63.822 0 0 0 0 43.21796966806488 0 0 0 2.6989700043360187 0 1.024227503252014 0 + + [Y{I|L}]{I|L}PSY{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.9418 + + 138 + NaN NaN 235255 NaN 19305 4491 23796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23799 94.78 NaN 188390 35 0 30589 0.261 -1 0 48 523.7805994333332 1045.5466459334664 2 523.780517578125 MULTI HCD FTMS 0 0 0 23796 96585.765625 0.8354686150652093 3 -0.06207275390625 3 NaN NaN 2 {I|L}{M(Oxidation (M))|F}R{I|L}{I|L}D 6 -1 44.213 0 0 4.2287 0 0 0 285.08539758853755 285.08539758853755 20.62977812912628 0 0 0 0 1.492992819099939 0 0.3252574989159953 0 {I|L}{M(Oxidation (M))|F}R{I|L}{I|L}D 4.2287 - 108 + NaN NaN 119759 NaN 19306 4491 23796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23800 94.783 NaN 120730 35 0 10766 0.262 -1 0 38 426.1891344575428 425.18185799094283 1 426.1916198730469 MULTI HCD FTMS 0 0 0 23796 45662.10546875 1 0 0 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 16.99 0 0 3.9959 0 0 260.1028765229725 0 260.1028765229725 0 16.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.9959 - 4 + NaN NaN 104507.7 NaN 19307 4491 23796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23801 94.787 NaN 189530 35 0 14735 0.261 -1 NYLPFIMEL 9 55 578.2934356069229 1154.5723182806457 2 578.2904052734375 MULTI HCD FTMS 0 0 0 23796 27535.3046875 0.2933135522863437 -4 0.10248565673828125 5 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 39.94969957227396 0.06557568441294001 2 W{I|L}{I|L} 3 -1 31.555 0 0 2.733 0 0 724.319139549025 0 724.319139549025 0 8.634993639681312 0 0 0 0.7742275032520141 0 0 0 W{I|L}{I|L} 2.733 - 137 NaN NaN 125120.6 NaN 19308 4491 23796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23803 94.792 NaN 1973800 35 0 537980 0.326 + 11292 IYLTFPVAMF 10 76 609.3174773071619 1216.6204016811237 2 609.3177490234375 MULTI HCD FTMS 0 0 0 23802 1133015.625 0.7683586571439204 1 -0.02618408203125 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 162.95088124538222 7.72408794244308E-11 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 127.35 0 0 10.467 10.467 91.767 0 0 0 22.754537344402905 91.36311703982726 22.754537344402905 4.731975075880328 0 3.138210492164445 1.6989700043360187 2.385151878060192 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}[{I|L}T]{M(Oxidation (M))|F}{[CP]|[EA]} 10.467;10.079;9.2392;6.4273;5.3775;4.7484;4.3012 +;-;-;-;-;-;- + 738 NaN NaN 378811.9 NaN 19309 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23804 94.796 NaN 1355600 35 0 308540 0.262 -1 LFNLIDTF 8 66 512.7721352362807 NaN 0 512.7894287109375 PEAK HCD FTMS 0 0 0 23802 14894.2587890625 0.5418363814614957 -2 0.0533599853515625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFNLIDTF_ ENSG00000101955|ENST00000378533|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;SRPX|p.R448G|1|0.11|ENSG00000101955|chrX:38149764-38149764|T/C|missense_variant 32.116972079565 0.3772972708913157 2 {M(Oxidation (M))|F}R{I|L}{I|L}DT 6 -1 35.087 0 0 3.428 0 0 113.08235697932271 162.05584131412346 275.1381982934462 0 0 0 0 0 0 0 1.774227503252014 0 {M(Oxidation (M))|F}R{I|L}{I|L}DT 3.428 - 193 + NaN NaN 294233 NaN 19310 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23805 94.8 NaN 419360 35 0 22435 0.261 -1 0 82 451.93261201226846 1352.7760066370054 3 451.9326477050781 MULTI HCD FTMS 0 0 0 23802 278594.6875 0.4557680977924232 32 -0.7469329833984375 3 NaN NaN 2 Q 1 -1 9.732 0 0 0.71941 0 0 678.4040106426679 543.2994478815061 1221.703458524174 0 0 0 0 0 0.4247425010840047 0 0 0 Q 0.71941 - 47 + NaN NaN 159404.8 NaN 19311 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23806 94.803 NaN 550080 35 0 71994 0.261 + 5797 FPATVLWEL 9 61 538.2944089029704 1074.5742648727407 2 538.294677734375 MULTI HCD FTMS 0 0 0 23802 241752.953125 0.7909781435654827 -3 0.07297515869140625 4 Unmodified _FPATVLWEL_ ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;nc|ENSG00000155363|Q9HCE1-2|MOV10 58.678817012210395 0.019429721296335044 2 [YV][PG]V{I|L}WE{I|L} 9 4 + 50.603 0 0 4.7092 4.7092 85.27 0 0 0 4.941505725751739 30.42605579079202 4.941505725751739 8.17287477869337 0 1.7302046884880937 1.0457574905606752 0.3054621874040891 0 [YV][PG]V{I|L}WE{I|L};[VP][YG]V{I|L}WE{I|L};[YV][PG]V{I|L}[PS]P{M(Oxidation (M))|F};[VP][YG]V{I|L}[PS]P{M(Oxidation (M))|F} 4.7092;3.9486;1.937;1.815 -;-;-;- 177 NaN NaN 180269.1 NaN 19312 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23807 94.806 NaN 285790 35 0 35426 0.261 + 18023 MLLHADGDF 9 45 509.7360768574433 1017.4576007816867 2 509.7362365722656 MULTI HCD FTMS 0 0 0 23802 79712.109375 0.5961497112487935 1 -0.02618408203125 5 Unmodified _MLLHADGDF_ REV__ENSG00000275395|ENST00000616721|FCGBP;REV__nc|ENSG00000275395|Q9Y6R7|FCGBP 16.942295170755138 0.21397866736869717 2 M{I|L}AEV[VP]{M(Oxidation (M))|F} 8 -1 32.885 0 0 3.2321 0 0 112.9868538483641 0 112.9868538483641 0 2.4400970831689506 0 0 0 0.3807196863200844 0 0.3494850021680094 0 M{I|L}AEV[VP]{M(Oxidation (M))|F} 3.2321 - 94 + NaN NaN 137330.5 NaN 19313 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23808 94.81 NaN 93376 35 0 27148 0.261 + 33107 YDTAEDEFI 9 31 551.7329577963087 1101.4513626594173 2 551.7329711914062 MULTI HCD FTMS 0 0 0 23802 51459.51953125 0.11021689951569491 9 -0.199371337890625 6 Unmodified _YDTAEDEFI_ tr|U7T080|U7T080_FUSNUSulfatase-modifyingfactorenzymedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00763PE=4SV=1 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.3577 0 0 823.28418241193 0 823.28418241193 0 25.969100130080562 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.3577 + + 2 NaN NaN 134620.2 NaN 19314 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23809 94.813 NaN 81304 35 0 12411 0.261 -1 VFMFPVGLYY 10 36 626.3099052112581 1250.605257489316 2 626.309326171875 MULTI HCD FTMS 0 0 0 23802 20820.705078125 0.38969195030051773 -4 0.09914398193359375 7 Oxidation (M) _VFM(Oxidation (M))FPVGLYY_ ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A 32.116972079565 0.21381478738184487 2 {M(Oxidation (M))|F}[VP]{[VA]|[{I|L}G]}YY 7 -1 28.728 0 0 2.2971 0 0 393.17317397285314 0 393.17317397285314 0 18.243719559664413 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}[VP]{[VA]|[{I|L}G]}YY 2.2971 + + 27 NaN NaN 118981.2 NaN 19315 4492 23802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23811 94.818 NaN 1203600 35 0 96450 0.327 + 5865 FPDFPTPGVVF 11 72 611.8110145244015 1221.6074761156028 2 611.8108520507812 MULTI HCD FTMS 0 0 0 23810 344492.40625 0.05940515185076131 -28 0.6936721801757812 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 60.07390631473393 0.040050767047445146 2 {M(Oxidation (M))|F}[TP][RP]V{M(Oxidation (M))|F} 7 5 36.688 0 0 3.0032 0 0 359.14680678535314 0 359.14680678535314 0 19.609513138739672 0 0 0 1.579689690656103 0 1.089136830878453 0 {M(Oxidation (M))|F}[TP][RP]V{M(Oxidation (M))|F} 3.0032 - 82 NaN NaN 267788.1 NaN 19316 4493 23810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23812 94.822 NaN 213900 35 0 10848 0.264 + 30948 VRLREISEQIK 11 67 457.60827744250093 1369.803002927703 3 457.6081237792969 MULTI HCD FTMS 0 0 0 23810 115055.4140625 0.31125166720531794 28 -0.6627578735351562 2 Unmodified _VRLREISEQIK_ REV__ENSG00000100336|ENST00000683024|APOL4;REV__nc|ENSG00000100336|Q9BPW4-3|APOL4;REV__nc|ENSG00000100336|Q9BPW4|APOL4 2.2527281973983926 0.4090409658946738 2 D 1 -1 8.9794 0 0 0.65552 0 0 61.05532763768412 1190.6724157488632 1251.7277433865472 0 0 0 0 0 0.5 0 0 0 D 0.65552 - 21 + NaN NaN 119478.7 NaN 19317 4493 23810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23813 94.826 NaN 328350 35 0 49036 0.261 + 34503 YPFLLVGDLM 10 57 592.3073986493324 1182.6002443654647 2 592.3072509765625 MULTI HCD FTMS 0 0 0 23810 99881.515625 0.14086975404581864 22 -0.5266189575195312 3 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 88.90359156742426 0.0010865658313541904 2 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 8 6 77.873 0 0 6.5849 0 0 278.12910659004064 0 278.12910659004064 0 70.88344732164998 0 0 0 2.079689690656103 0 1.274227503252014 0 DGV{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.5849 - 230 NaN NaN 143302.9 NaN 19318 4493 23810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23814 94.829 NaN 175270 35 0 11350 0.261 + -1 MYNWANKF 8 58 545.2453163798717 1088.4760798265434 2 545.2451782226562 MULTI HCD FTMS 0 0 0 23810 40156.87109375 0.4290059185208505 -1 0.02618408203125 4 Oxidation (M) _M(Oxidation (M))YNWANKF_ REV__ENSG00000052802|ENST00000261507|MSMO1 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3417 0 0 923.3973577579872 0 923.3973577579872 0 5.051499783199061 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3417 + + 24 + NaN NaN 116349.2 NaN 19319 4493 23810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23816 94.834 NaN 2154100 35 0 172760 0.327 + 6426 FPIAEVFTL 9 97 518.7894699996922 1035.5643870661843 2 518.7894897460938 MULTI HCD FTMS 0 0 0 23815 1164626.875 0.7385334874498655 -1 0.01633453369140625 1 Unmodified _FPIAEVFTL_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 139.54400939418784 2.61670173137287E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L} 9 0 + 88.215 0 0 8.5186 8.5186 91.739 0 0 0 8.653014261025447 16.478174818886373 8.653014261025447 8.653014261025447 0 2.2614393726401687 1.5228787452803376 0.6549471895720985 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L};[{I|L}P]{M(Oxidation (M))|F}AEV{M(Oxidation (M))|F}T{I|L};[{I|L}P]A{M(Oxidation (M))|F}EV{M(Oxidation (M))|F}T{I|L};[{I|L}P]AE{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV[{I|L}T]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PA]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L};[{I|L}P]{M(Oxidation (M))|F}AEV[{I|L}T]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEVV[YV];[{I|L}T]{M(Oxidation (M))|F}VEA{I|L}P{M(Oxidation (M))|F} 8.5186;7.683;6.7339;6.1963;6.1715;5.5883;5.358;5.3359;5.332;5.1387 +;-;-;-;-;-;-;-;-;- + 1843 NaN NaN 426800.6 NaN 19320 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23817 94.839 NaN 1042100 35 0 88303 0.261 + 32029 VYPLYTIVF 9 82 557.8127009041965 1113.610848875193 2 557.81298828125 MULTI HCD FTMS 0 0 0 23815 304309.21875 0.4515674539983302 -6 0.14166259765625 2 Unmodified _VYPLYTIVF_ ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP 114.94377779790601 0.0021353177819039447 2 [{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YT{I|L}V{M(Oxidation (M))|F} 9 2 + 79.359 0 0 7.1262 7.1262 86.308 0 0 0 0.9640156839957825 2.0118389533507184 0.9640156839957825 0.9640156839957825 0 2.3494850021680094 1.3010299956639813 0.6989700043360187 0 [{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YT{I|L}V{M(Oxidation (M))|F};[YV][{I|L}P]YT{I|L}V{M(Oxidation (M))|F};[YV][{I|L}P]YT{M(Oxidation (M))|F}[{I|L}V];[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]YV{M(Oxidation (M))|F};[YV][{I|L}P][{I|L}T]YV{M(Oxidation (M))|F};[YV][{I|L}P]Y{M(Oxidation (M))|F}T[{I|L}V];[YV][{I|L}P]Y{M(Oxidation (M))|F}S{I|L}{I|L};[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YVV[YV];[YV][{I|L}P]YVV[YV];[{I|L}V]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}T]{M(Oxidation (M))|F}[YV] 7.1262;7.0397;4.4314;4.2742;4.1876;4.0259;3.7556;1.9037;1.8172;0.9141 -;+;-;-;-;-;-;-;-;- + 668 NaN NaN 257534.3 NaN 19321 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23818 94.842 NaN 398330 35 0 60272 0.261 + 1306 AYNDNWFITF 10 59 645.7925078670975 1289.5704628009948 2 645.7931518554688 MULTI HCD FTMS 0 0 0 23815 189782.59375 0.020406699790989562 22 -0.5198898315429688 3 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 86.33184430468982 0.0012839548613462067 2 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 56.95 0 0 4.4162 0 0 577.2139936098608 0 577.2139936098608 0 38.62273132779855 0 0 0 2.3494850021680094 0 1.1237125054200234 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4.4162 + + 86 + NaN NaN 159025.5 NaN 19322 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23819 94.845 NaN 224010 35 0 26561 0.261 + 16753 LYDEDLKSKE 10 56 620.3082305409291 1238.6019081486581 2 620.3082275390625 MULTI HCD FTMS 0 0 0 23815 94556.1171875 0.6944098414568628 3 -0.081939697265625 4 Unmodified _LYDEDLKSKE_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant 24.990960013464015 0.27735500881591096 2 {I|L}Y{I|L}T{M(Oxidation (M))|F} 5 -1 74.24 0 0 5.9939 0 0 0 598.2281588190061 598.2281588190061 43.974315640635595 0 0 0 0 1.524227503252014 2 0.7059771852360797 0 {I|L}Y{I|L}T{M(Oxidation (M))|F} 5.9939 - 126 + NaN NaN 145670 NaN 19323 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23820 94.849 NaN 289650 35 0 60786 0.262 -1 0 59 504.79087231608753 1007.5671916989751 2 504.7908020019531 MULTI HCD FTMS 0 0 0 23815 92617.75 0.5421787835457079 3 -0.081939697265625 5 NaN NaN 2 {I|L}PAD 4 -1 56.107 0 0 5.5686 0 0 0 608.3407686822874 608.3407686822874 39.11720208836661 0 0 0 0 0.7887254899964358 1.3979400086720375 0.3807196863200844 0 {I|L}PAD 5.5686 - 56 + NaN NaN 129533.5 NaN 19324 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23821 94.852 NaN 87845 35 0 8273.7 0.261 + 13677 KYPENFFLL 9 36 585.8134552789435 NaN 0 585.81298828125 PEAK HCD FTMS 0 0 0 23815 46563.484375 0.5275958205734119 -6 0.14166259765625 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.22495052155071432 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 18.188 0 0 1.555 0 0 131.0916738592651 628.2711275690061 759.3628014282713 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.555 - 12 + NaN NaN 107772.4 NaN 19325 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23822 94.855 NaN 337380 35 0 56588 0.262 + 4889 FAFVEFEL 8 37 501.252669970674 1000.490787008148 2 501.2530212402344 MULTI HCD FTMS 0 0 0 23815 138263.59375 0.6709891468621868 -3 0.06207275390625 7 Unmodified _FAFVEFEL_ ENSG00000084072|ENST00000324379|PPIE;ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE 67.34385681178166 0.03276080048072826 2 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}VE{M(Oxidation (M))|F}E{I|L} 8 0 {[MS]|[{M(Oxidation (M))|F}A]} + + 55.252 0.85348 0.39131 5.5225 5.5225 63.096 0 0 0 0 47.71652514092061 0 0 0 2.2302046884880937 0 1.2059771852360797 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}VE{M(Oxidation (M))|F}E{I|L} 5.5225 + + 105 + NaN NaN 139310.4 NaN 19326 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23823 94.859 NaN 237510 35 0 16870 0.261 + 29491 TYVMETWLL 9 56 578.2934356069229 1154.5723182806457 2 578.7976684570312 MULTI HCD FTMS 0 0 0 23815 26379.46484375 0.4591342772412033 -1 0.01633453369140625 8 Unmodified _TYVMETWLL_ REV__ENST00000336578.5_1_10:70056084-70056117:-|nuORF 26.88365393820708 0.12808753336095696 2 [YT][KQ]{[CT]|[{M(Oxidation (M))|F}G]}W{I|L}{I|L} 9 -1 + 33.82 0 0 2.9292 2.9292 81.173 0 0 0 1.5128683348214693 12.432562101416174 1.5128683348214693 2.486512420283237 0 1.1989700043360187 1.5228787452803376 0 0 [YT][KQ]{[CT]|[{M(Oxidation (M))|F}G]}W{I|L}{I|L};[YT][KQ]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}QM{I|L};[YN]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}{[QN]|[E{I|L}]|[KN]}{I|L}{I|L};[YN]{I|L}QQ{M(Oxidation (M))|F}VM{I|L};[YT][KQ]{[WS]|[C(Carbamidomethyl (C)){I|L}]}VM{I|L};[YV]K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}E]{I|L}{I|L};[YV]Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[{M(Oxidation (M))|F}E]{I|L}{I|L};[YV]V{[WS]|[C(Carbamidomethyl (C)){I|L}]}[{M(Oxidation (M))|F}E]{I|L}{I|L};[YV]Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NG]{[MS]|[{M(Oxidation (M))|F}A]};[YV]K{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[NG]{[MS]|[{M(Oxidation (M))|F}A]} 2.9292;2.7139;2.2644;2.2599;2.0853;1.2457;1.2457;0.61714;0.51383;0.51383 -;-;-;-;-;-;-;-;-;- 237 NaN NaN 129712.8 NaN 19327 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23824 94.862 NaN 77429 35 0 12482 0.261 + 30003 VFMFPVGLYY 10 28 626.3099052112581 1250.605257489316 2 626.3109741210938 MULTI HCD FTMS 0 0 0 23815 48542.015625 0.9085394884296574 -2 0.04251861572265625 9 Oxidation (M) _VFM(Oxidation (M))FPVGLYY_ ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A 40.44857923139169 0.14151405174515247 2 {M(Oxidation (M))|F}[VP]{[VA]|[{I|L}G]}YY 7 3 32.535 0 0 2.6016 0 0 393.1725331037125 0 393.1725331037125 0 32.53546648790554 0 0 0 1.805462187404089 0 0 0 + {M(Oxidation (M))|F}[VP]{[VA]|[{I|L}G]}YY 2.6016 + + 19 NaN NaN 107395.9 NaN 19328 4494 23815 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23826 94.867 NaN 820970 35 0 112620 0.327 + 6096 FPEEVIATIF 10 60 583.3103290180842 1164.6061051029683 2 583.310546875 MULTI HCD FTMS 0 0 0 23825 266582.8125 0.6101263530469949 10 -0.225433349609375 1 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 41.8396318013385 0.12944265636084 2 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 55.534 0 0 4.7685 0 0 601.2738523987464 0 601.2738523987464 0 28.086681479559203 0 0 0 1.7302046884880937 0 0.805462187404089 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 4.7685 + + 134 NaN NaN 231090.6 NaN 19329 4495 23825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23827 94.871 NaN 189430 35 0 37869 0.261 -1 0 54 548.3460582813153 547.3387818147153 1 548.3339233398438 MULTI HCD FTMS 0 0 0 23825 69750.6171875 0.7211184635789533 -6 0.1483306884765625 2 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 14.693 0 0 2.6844 0 0 269.17586174811214 0 269.17586174811214 0 14.208187539523749 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 2.6844 - 13 + NaN NaN 110330.6 NaN 19330 4495 23825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23828 94.875 NaN 166250 35 0 21281 0.261 + 31428 VYASLGALLF 10 56 527.3026485312274 1052.5907441292547 2 527.30224609375 MULTI HCD FTMS 0 0 0 23825 64106.8515625 0.07255751669578278 12 -0.27779388427734375 3 Unmodified _VYASLGALLF_ ENSG00000178719|ENST00000395068|GRINA;ENST00000533377.1_1_8:145066406-145067006:+|nuORF 25.399314129420986 0.2735354021946395 2 T{M(Oxidation (M))|F}[HQ]{I|L}{I|L}{M(Oxidation (M))|F} 7 7 42.312 0 0 4.0198 0 0 148.12336277730918 0 148.12336277730918 0 26.38190082242268 0 0 0 1.305462187404089 0 0.3807196863200844 0 T{M(Oxidation (M))|F}[HQ]{I|L}{I|L}{M(Oxidation (M))|F} 4.0198 - 70 + NaN NaN 119771.1 NaN 19331 4495 23825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23830 94.88 NaN 573170 35 0 155590 0.327 + 10420 IPADIVFVL 9 52 493.79970955712827 985.5848661810566 2 493.7998352050781 MULTI HCD FTMS 0 0 0 23829 306728.96875 0.36414609047009305 5 -0.11106109619140625 1 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 21.74664581756881 0.17247014374749275 2 V{M(Oxidation (M))|F}V{I|L} 4 5 46.186 0 0 4.6861 0 0 509.28403352895873 0 509.28403352895873 0 30.199630678816618 0 0 0 1.4247425010840047 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 4.6861 + + 76 NaN NaN 177606.5 NaN 19332 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23831 94.884 NaN 603820 35 0 74439 0.261 + 15106 LMIEASAPNL 10 71 529.7803786289137 1057.5462043246273 2 529.7805786132812 MULTI HCD FTMS 0 0 0 23829 220385.21875 0.8502964143920102 1 -0.0361480712890625 2 Unmodified _LMIEASAPNL_ REV__ENSG00000134709|ENST00000371208|HOOK1;REV__ENST00000466803.1_1_1:60330814-60338634:+|nuORF;REV__nc|ENSG00000134709|Q9UJC3-2|HOOK1 28.494509381512117 0.24525010509582015 2 {I|L}M{I|L}AEV{M(Oxidation (M))|F} 7 -1 83.753 0 0 7.9196 0 0 0 251.10097681217033 251.10097681217033 66.27381680993977 0 0 0 0 2.309894379144197 1.6989700043360187 0.7614393726401688 0 {I|L}M{I|L}AEV{M(Oxidation (M))|F} 7.9196 - 706 + NaN NaN 199223 NaN 19333 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23832 94.888 NaN 330120 35 0 98659 0.261 + 6293 FPFNPLDF 8 40 498.744888759462 995.475224585724 2 498.7449645996094 MULTI HCD FTMS 0 0 0 23829 244870.8125 0.34405480171900377 7 -0.1601104736328125 3 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 26.88365393820708 0.39599352634412927 2 N[{I|L}P]D{M(Oxidation (M))|F} 5 3 37.218 0 0 3.7388 0 0 391.18846327949376 0 391.18846327949376 0 13.406206186877938 0 0 0 1.5 0 0 0 + N[{I|L}P]D{M(Oxidation (M))|F} 3.7388 + + 23 NaN NaN 149979.8 NaN 19334 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23833 94.891 NaN 363150 35 0 52842 0.261 + -1 LYMLFMEIL 9 58 594.8036742630924 NaN 0 594.8189086914062 PEAK HCD FTMS 0 0 0 23829 8184.62646484375 0.199181715980657 9 -0.2124786376953125 4 Oxidation (M) _LYM(Oxidation (M))LFMEIL_ REV__ENST00000487532.5_1_1:45424435-45452248:-|nuORF 13.50788311687929 0.22978952576613207 2 {I|L}Y{M(Oxidation (M))|F}G 4 -1 15.918 0 0 1.3403 0 0 131.06429157722442 573.2560518854124 704.3203434626369 0 0 0 0 0 0 0 0 0 {I|L}Y{M(Oxidation (M))|F}G 1.3403 - 28 + NaN NaN 169561.9 NaN 19335 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23834 94.895 NaN 274880 35 0 23425 0.261 -1 0 71 622.8019025252823 1243.5892521173646 2 622.8017578125 MULTI HCD FTMS 0 0 0 23829 120149.9609375 0.13289248107176743 -25 0.60968017578125 5 NaN NaN 2 TP{M(Oxidation (M))|F}DPE 6 -1 50.266 0 0 4.042 0 0 539.2614613263687 0 539.2614613263687 0 24.579569145996345 0 0 0 1.2302046884880937 0 0.3807196863200844 0 TP{M(Oxidation (M))|F}DPE 4.042 - 196 NaN NaN 141375.1 NaN 19336 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23835 94.898 NaN 246620 35 0 27974 0.261 -1 NYLPFIMEL 9 48 578.2934356069229 1154.5723182806457 2 578.2955932617188 MULTI HCD FTMS 0 0 0 23829 69076.84375 0.735825321382372 1 -0.0361480712890625 6 Oxidation (M) _NYLPFIM(Oxidation (M))EL_ ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 21.536976647645854 0.1742816388551942 2 W{I|L}{I|L} 3 -1 33.188 0 0 2.8744 0 0 724.3173612837167 0 724.3173612837167 0 23.010299956639813 0 0 0 0.8494850021680094 0 0 0 W{I|L}{I|L} 2.8744 - 50 NaN NaN 127793.1 NaN 19337 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23836 94.901 NaN 192320 35 0 17396 0.261 + 33557 YILDNNHTHL 10 48 620.3082305409291 1238.6019081486581 2 620.32373046875 MULTI HCD FTMS 0 0 0 23829 61447.66796875 0.4512649910048807 5 -0.11106109619140625 7 Unmodified _YILDNNHTHL_ ENSG00000144481|ENST00000324695|TRPM8 8.745405648335112 0.42901288225909884 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 6 36.995 0 0 2.9868 0 0 0 598.2298678033811 598.2298678033811 16.677353201839438 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 2.9868 - 42 + NaN NaN 120430.4 NaN 19338 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23837 94.904 NaN 153010 35 0 35678 0.261 + 6132 FPEGLFYEF 9 35 574.7685982649667 1147.5226435967334 2 574.7684936523438 MULTI HCD FTMS 0 0 0 23829 43926.77734375 0.013441308447723267 59 -1.2761688232421875 8 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 49.399 0 0 4.3048 0 0 543.2702787582386 0 543.2702787582386 0 45.41956270212445 0 0 0 2 0 0.8252574989159953 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4.3048 + + 33 + NaN NaN 115642 NaN 19339 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23838 94.908 NaN 101030 35 0 13127 0.261 + 5064 FDSGFFFILY 10 34 628.3072865434578 1254.6000201537156 2 628.30712890625 MULTI HCD FTMS 0 0 0 23829 32783.23828125 0.547452841807205 1 -0.0361480712890625 9 Unmodified _FDSGFFFILY_ REV__ENSG00000132965|ENST00000380490|ALOX5AP 14.838274106304384 0.3723198072575719 2 N{M(Oxidation (M))|F}{I|L}Y{I|L} 5 -1 55.618 0 0 4.4331 0 0 586.2473011701187 0 586.2473011701187 0 55.617515817243515 0 0 0 1.7302046884880937 0 0 0.4247425010840047 N{M(Oxidation (M))|F}{I|L}Y{I|L} 4.4331 - 46 NaN NaN 105569.2 NaN 19340 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23839 94.911 NaN 45868 35 0 7055.6 0.261 -1 IYKRLRQCF 9 31 642.3562934692467 1282.6980340052933 2 642.3573608398438 MULTI HCD FTMS 0 0 0 23829 12011.423828125 0.4341285210099362 1 -0.0361480712890625 10 Carbamidomethyl (C) _IYKRLRQC(Carbamidomethyl (C))F_ tr|U7SEE9|U7SEE9_FUSNU2',3'-cyclic-nucleotide3'-phosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02343PE=4SV=1 1.844237919475145 0.33703635659052655 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6348 0 0 0 1019.5293062799436 1019.5293062799436 18.979400086720375 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6348 - 2 + NaN NaN 108764.5 NaN 19341 4496 23829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23841 94.916 NaN 419460 35 0 62969 0.327 + -1 PVYEMVLQL 9 57 554.2896972826258 NaN 0 554.3079833984375 PEAK HCD FTMS 0 0 0 23840 26688.244140625 1 0 0 1 Oxidation (M) _PVYEM(Oxidation (M))VLQL_ REV__ENSG00000105397|ENST00000525621|TYK2 16.942295170755138 0.2079222001251384 2 Q{I|L}V 3 -1 16.198 0 0 1.4638 0 0 131.05898602821304 632.2708922168897 763.3298782451027 0 0 0 0 0 0 0 0 0 Q{I|L}V 1.4638 - 91 + NaN NaN 154546.1 NaN 19342 4497 23840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23842 94.92 NaN 123390 35 0 12660 0.261 + 16548 LTSLPVVLL 9 44 477.81542277940827 953.6162926256166 2 477.8150939941406 MULTI HCD FTMS 0 0 0 23840 23332.2578125 0.6698430353093455 2 -0.04550933837890625 2 Unmodified _LTSLPVVLL_ REV__ENSG00000153922|ENST00000614616|CHD1;REV__nc|ENSG00000153922|O14646-2|CHD1 21.74664581756881 0.17247014374749275 2 V{I|L}{I|L} 3 -1 36.198 0 0 3.7959 0 0 610.3680897443375 0 610.3680897443375 0 33.09894379144197 0 0 0 1 0 0 0 V{I|L}{I|L} 3.7959 + + 14 NaN NaN 126222.2 NaN 19343 4497 23840 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23844 94.925 NaN 632650 35 0 166100 0.326 + 11293 IYLTFPVAMF 10 58 609.3174773071619 1216.6204016811237 2 609.31787109375 MULTI HCD FTMS 0 0 0 23843 337806.84375 0.2290849367922672 7 -0.166717529296875 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 123.27 0 0 10.132 10.132 98.856 0 0 0 22.754537344402905 109.62389106339742 22.754537344402905 51.5815315012393 0 3.1549471895720984 1.6989700043360187 1.9604093769761874 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]VVYPVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{I|L}YPVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10.132;5.8923;5.6423;5.3156;5.0819;4.7621 +;-;-;-;-;- + 403 NaN NaN 196249.5 NaN 19344 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23845 94.93 NaN 633870 35 0 125290 0.262 -1 LFNLIDTF 8 66 512.7721352362807 NaN 0 512.7894897460938 PEAK HCD FTMS 0 0 0 23843 5135.59619140625 0.18682721284810924 3 -0.06529998779296875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LFNLIDTF_ ENSG00000101955|ENST00000378533|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;SRPX|p.R448G|1|0.11|ENSG00000101955|chrX:38149764-38149764|T/C|missense_variant 19.438996006549623 0.38500361301801034 2 {I|L}R{I|L}{I|L}{M(Oxidation (M))|F} 5 -1 20.177 0 0 1.9713 0 0 165.04477250499514 213.05153833560783 378.096310840603 0 0 0 0 0 0 0 0 0 {I|L}R{I|L}{I|L}{M(Oxidation (M))|F} 1.9713 - 71 + NaN NaN 214083.3 NaN 19345 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23846 94.933 NaN 303130 35 0 16612 0.261 -1 0 73 451.93261201226846 1352.7760066370054 3 451.9327697753906 MULTI HCD FTMS 0 0 0 23843 206636.140625 0.33804722406210247 38 -0.859954833984375 3 NaN NaN 2 QV 2 -1 11.722 0 0 0.86649 0 0 722.4315374981367 400.2024325006469 1122.6339699987836 0 0 0 0 0 0.4247425010840047 0 0 0 QV 0.86649 - 53 + NaN NaN 157202.5 NaN 19346 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23847 94.937 NaN 484980 35 0 52412 0.261 + 5798 FPATVLWEL 9 65 538.2944089029704 1074.5742648727407 2 538.294677734375 MULTI HCD FTMS 0 0 0 23843 143907.0625 0.4708415747184552 3 -0.06529998779296875 4 Unmodified _FPATVLWEL_ ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;nc|ENSG00000155363|Q9HCE1-2|MOV10 36.12702656103203 0.08312389501731911 2 V{I|L}WE{I|L} 5 4 44.046 0 0 4.0989 0 0 416.20405776191564 0 416.20405776191564 0 35.08380758535916 0 0 0 1.1861818737241734 0 0.28872548999643577 0 + V{I|L}WE{I|L} 4.0989 + + 84 NaN NaN 168239.2 NaN 19347 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23848 94.94 NaN 67548 35 0 4864.7 0.261 + -1 FSRLNRRRRR 10 44 486.9590278463644 1457.8552541392933 3 486.959228515625 MULTI HCD FTMS 0 0 0 23843 36977.3046875 0.44698701572695976 -12 0.28563690185546875 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FSRLNRRRRR_ REV__ENSG00000072315|ENST00000262839|TRPC5;REV__TRPC5|p.G689R|1|0.24|ENSG00000072315|chrX:111781970-111781970|C/G|missense_variant 0.15932191953741626 0.4744603884079788 2 E 1 -1 6.9897 0 0 0.47945 0 0 740.4828919340183 585.3155611627561 1325.7984530967744 0 0 0 0 0 0 0 0 0 E 0.47945 - 1 + NaN NaN 102918.4 NaN 19348 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23849 94.943 NaN 177920 35 0 35498 0.261 + 32082 VYQVLIQFL 9 41 561.8314604023964 1121.6483678715927 2 561.8319702148438 MULTI HCD FTMS 0 0 0 23843 16044.1826171875 0.13373472040943496 -2 0.0457611083984375 6 Unmodified _VYQVLIQFL_ ENSG00000152104|ENST00000366956|PTPN14 36.12702656103203 0.08312389501731911 2 V{I|L}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 6 3 49.57 0 0 4.4194 0 0 390.18945781475514 0 390.18945781475514 0 49.569940744530356 0 0 0 1.9247425010840047 0 0.3494850021680094 0.3807196863200844 + V{I|L}{I|L}Q{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4.4194 + + 69 + NaN NaN 113804.7 NaN 19349 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23850 94.947 NaN 104170 35 0 16281 0.262 -1 0 56 472.283751677077 1413.8294256314311 3 472.28399658203125 MULTI HCD FTMS 0 0 0 23843 22179.27734375 0.0496753301064594 -23 0.5506973266601562 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 137148.9 NaN 19350 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23851 94.95 NaN 177450 35 0 17243 0.261 + 10382 IMLWIETL 8 41 509.78390050848475 1017.5532480837695 2 509.7830810546875 MULTI HCD FTMS 0 0 0 23843 28296.876953125 0.7976825034455389 3 -0.06529998779296875 8 Unmodified _IMLWIETL_ REV__ENST00000483075.1_1_7:14026292-14028664:-|nuORF 24.67388899826682 0.4122521268485776 2 {I|L}M{I|L}{[CP]|[EA]}V 6 -1 61.133 0 0 6.0078 0 0 0 358.1767977350219 358.1767977350219 56.52880645020623 0 0 0 0 1.75 1.6989700043360187 0.4247425010840047 0 {I|L}M{I|L}{[CP]|[EA]}V 6.0078 - 77 + NaN NaN 131051.5 NaN 19351 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23852 94.953 NaN 127340 35 0 13371 0.261 -1 0 43 523.7805994333332 1045.5466459334664 2 523.7794799804688 MULTI HCD FTMS 0 0 0 23843 24779.66015625 0.21434450737708002 10 -0.24196624755859375 9 NaN NaN 2 M{I|L} 2 -1 18.583 0 0 1.7774 0 0 0 798.4028414361936 798.4028414361936 0 0 0 0 0 0 0 0 0 M{I|L} 1.7774 - 19 + NaN NaN 114195 NaN 19352 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23853 94.957 NaN 140950 35 0 21803 0.261 -1 0 46 638.2666900786223 1274.5188272240446 2 638.2664184570312 MULTI HCD FTMS 0 0 0 23843 32856.765625 0.13988391041636497 -23 0.5506973266601562 10 NaN NaN 2 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3566807432732 0 939.3566807432732 0 19.20818753952375 0 0 0 0 0 0 0 VMS 1.8193 - 9 NaN NaN 105875 NaN 19353 4498 23843 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23855 94.962 NaN 334670 35 0 67034 0.327 + 11143 IYIPSYFDF 9 52 582.7842552525641 1163.553957571928 2 582.7844848632812 MULTI HCD FTMS 0 0 0 23854 108314.9765625 0.05293372992099707 15 -0.34670257568359375 1 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 64.23631603340823 0.01165516075559909 2 Y{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 5 37.384 0 0 3.2129 0 0 573.3159337455594 0 573.3159337455594 0 4.5571379419440134 0 0 0 1.274227503252014 0 0.3494850021680094 0 + Y{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.2129 + + 85 + NaN NaN 141497.4 NaN 19354 4499 23854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23857 94.968 NaN 1738500 35 0 145830 0.327 + 6427 FPIAEVFTL 9 89 518.7894699996922 1035.5643870661843 2 518.7894897460938 MULTI HCD FTMS 0 0 0 23856 926299.9375 0.5874014570258542 5 -0.12378692626953125 1 Unmodified _FPIAEVFTL_ ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA 139.54400939418784 2.61670173137287E-05 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L} 9 0 + 81.973 0 0 7.9158 7.9158 92.769 0 0 0 9.542425094393252 16.478174818886373 9.542425094393252 9.542425094393252 0 2.2059771852360797 1.3979400086720375 0.7059771852360797 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV{M(Oxidation (M))|F}T{I|L};[{I|L}P]{M(Oxidation (M))|F}AEV{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEV[{I|L}T]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[PA]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};[{I|L}P]{[CP]|[EA]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F}T{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AE{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L};[{I|L}T]{M(Oxidation (M))|F}VEA{I|L}P{M(Oxidation (M))|F};[{I|L}P]{M(Oxidation (M))|F}AEV[{I|L}T]{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}AEVV[YV];[{I|L}T]{M(Oxidation (M))|F}V{M(Oxidation (M))|F}A[EP]{I|L} 7.9158;6.9943;5.6223;5.3758;5.2704;4.8488;4.7988;4.7008;4.6239;4.1878 +;-;-;-;-;-;-;-;-;- + 1398 NaN NaN 355218.9 NaN 19355 4500 23856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23858 94.973 NaN 1428300 35 0 164030 0.261 + 32030 VYPLYTIVF 9 86 557.8127009041965 1113.610848875193 2 557.8129272460938 MULTI HCD FTMS 0 0 0 23856 673895.375 1 0 0 2 Unmodified _VYPLYTIVF_ ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP 144.65680182435614 1.4474712564967525E-05 2 [YV]P{I|L}YT{I|L}V{M(Oxidation (M))|F} 9 0 + 92.674 0 0 8.3219 8.3219 95.776 0 0 0 11.409328277719766 11.409328277719766 11.409328277719766 24.51790047062771 0 2.774227503252014 1.3010299956639813 1.110924374808178 0 + + [YV]P{I|L}YT{I|L}V{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}V{M(Oxidation (M))|F};[YV]P{I|L}[{I|L}T]YV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{I|L}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]{I|L}V{M(Oxidation (M))|F};[YV]VV[{M(Oxidation (M))|F}E]{I|L}V{M(Oxidation (M))|F};[YV]P{I|L}YT{M(Oxidation (M))|F}[{I|L}V];[YV]P{I|L}Y{M(Oxidation (M))|F}T[{I|L}V];[YV]P{I|L}YVV[YV];[YV]P{I|L}[{I|L}T]{M(Oxidation (M))|F}[YV] 8.3219;6.1203;5.2682;5.0911;4.889;4.5575;4.1801;2.5193;1.6419 +;-;-;-;-;-;-;-;- + 863 NaN NaN 297724.3 NaN 19356 4500 23856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23859 94.976 NaN 325680 35 0 48337 0.261 + 1307 AYNDNWFITF 10 53 645.7925078670975 1289.5704628009948 2 645.79296875 MULTI HCD FTMS 0 0 0 23856 138294.46875 0.01487035059839695 28 -0.615081787109375 3 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 59.05245873256422 0.044867740978679724 2 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 58.188 0 0 4.5122 0 0 577.211152817764 0 577.211152817764 0 41.98970004336019 0 0 0 1.8807196863200843 0 0.3807196863200844 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 4.5122 + + 130 NaN NaN 136794.6 NaN 19357 4500 23856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23860 94.979 NaN 207320 35 0 27941 0.261 + 34504 YPFLLVGDLM 10 50 592.3073986493324 1182.6002443654647 2 592.3072509765625 MULTI HCD FTMS 0 0 0 23856 65289.7109375 0.09208255865899333 29 -0.6408538818359375 4 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 54.773552608820026 0.0604291769046433 2 {I|L}V[DG]{I|L}{M(Oxidation (M))|F} 6 4 45.01 0 0 3.806 0 0 520.27055556465 0 520.27055556465 0 38.02046884880937 0 0 0 1.8494850021680094 0 0.3494850021680094 0 + {I|L}V[DG]{I|L}{M(Oxidation (M))|F} 3.806 + + 45 NaN NaN 134538.6 NaN 19358 4500 23856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23861 94.983 NaN 89875 35 0 8176.5 0.261 + 3491 EHEMFFHL 8 34 545.2453163798717 1088.4760798265434 2 545.2452392578125 MULTI HCD FTMS 0 0 0 23856 41743.33984375 0.4459545617980979 6 -0.15660858154296875 5 Unmodified _EHEMFFHL_ chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|15 2.302733041254933 0.5385759549224092 2 T 1 8 4.6041 0 0 0.42299 0 0 840.5510595402137 143.85653101138908 984.4075905516028 0 0 0 0 0 0 0 0 0 T 0.42299 - 6 + NaN NaN 127022.5 NaN 19359 4500 23856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23862 94.986 NaN 145450 35 0 14048 0.261 + 15080 LMAEISNLK 9 55 509.78390050848475 1017.5532480837695 2 509.784423828125 MULTI HCD FTMS 0 0 0 23856 18400.17578125 0.5186967560179657 5 -0.12378692626953125 6 Unmodified _LMAEISNLK_ ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1 18.1463463914782 0.20357593197100715 2 {I|L}M{I|L}{[CP]|[EA]}V 6 6 59.698 0 0 5.8668 0 0 0 358.1761340836975 358.1761340836975 55.718421963928435 0 0 0 0 1.3494850021680094 2 0.3807196863200844 0 {I|L}M{I|L}{[CP]|[EA]}V 5.8668 - 36 + NaN NaN 118683.1 NaN 19360 4500 23856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23864 94.991 NaN 1353500 35 0 252980 0.327 + 29497 TYVPWPLML 9 79 568.2964296685745 1134.578306403949 2 568.2966918945312 MULTI HCD FTMS 0 0 0 23863 578372.375 0.9879668001506192 2 -0.04904937744140625 1 Oxidation (M) _TYVPWPLM(Oxidation (M))L_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 97.07464715276575 0.004340583992084827 2 [YT]VPWP{I|L}{M(Oxidation (M))|F}{I|L} 9 0 + 94.99 0 0 8.3722 8.3722 89.475 0 0 0 15.568109453757657 16.478174818886373 15.568109453757657 3.4948500216800937 0 2.4361818737241734 1.6989700043360187 0.805462187404089 0 + + [YT]VPWP{I|L}{M(Oxidation (M))|F}{I|L};[YT]VWPP{I|L}{M(Oxidation (M))|F}{I|L};[YT]VPWP{M(Oxidation (M))|F}{I|L}{I|L};[YT]VWPP{M(Oxidation (M))|F}{I|L}{I|L};[YV]TPWP{I|L}{M(Oxidation (M))|F}{I|L};[YV]TWPP{I|L}{M(Oxidation (M))|F}{I|L};[YV]TPWP{M(Oxidation (M))|F}{I|L}{I|L};[YT][WP]VP{I|L}{M(Oxidation (M))|F}{I|L};[YV]TWPP{M(Oxidation (M))|F}{I|L}{I|L};[WP]TYVP{I|L}{M(Oxidation (M))|F}{I|L} 8.3722;8.0642;7.5571;7.2491;7.0001;6.692;6.185;5.8854;5.877;5.1901 +;-;-;-;-;-;-;-;-;- + 1452 NaN NaN 318828.8 NaN 19361 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23865 94.995 NaN 330870 35 0 63407 0.261 + 4890 FAFVEFEL 8 36 501.252669970674 1000.490787008148 2 501.2528991699219 MULTI HCD FTMS 0 0 0 23863 129021.921875 0.6261395855366009 4 -0.10141754150390625 2 Unmodified _FAFVEFEL_ ENSG00000084072|ENST00000324379|PPIE;ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE 60.38955033654506 0.06344887527228933 2 VE{M(Oxidation (M))|F}E{I|L} 5 3 54.949 0 0 5.4922 0 0 365.17329604316564 0 365.17329604316564 0 43.52182518111363 0 0 0 1.8494850021680094 0 0 0 + VE{M(Oxidation (M))|F}E{I|L} 5.4922 + + 87 NaN NaN 141354.4 NaN 19362 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23866 94.999 NaN 134110 35 0 7444.5 0.261 + 16052 LPSHRRRHRR 10 66 457.60827744250093 1369.803002927703 3 457.6083984375 MULTI HCD FTMS 0 0 0 23863 50852.2890625 0.13756727469871105 36 -0.8242721557617188 3 Unmodified _LPSHRRRHRR_ REV__ENST00000330070.5_1_17:46621981-46622053:-|nuORF 0.776531954647913 0.4711933975711956 2 E 1 -1 3.9794 0 0 0.29051 0 0 643.4267955075842 594.3286837213499 1237.755479228934 0 0 0 0 0 0 0 0 0 E 0.29051 - 10 + NaN NaN 112607 NaN 19363 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23867 95.002 NaN 100530 35 0 12300 0.261 -1 MKMRLCFLL 9 40 585.8134552789435 NaN 0 585.8134765625 PEAK HCD FTMS 0 0 0 23863 58125.55859375 0.6586019537451651 1 -0.02947998046875 4 Oxidation (M) _M(Oxidation (M))KMRLCFLL_ ENST00000263636.4_1_2:160661544-160661592:-|nuORF 10.823927491677226 0.2427956001690155 2 {I|L}{M(Oxidation (M))|F} 2 -1 15.969 0 0 1.3653 0 0 131.092800943339 775.3401362482589 906.4329371915978 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.3653 - 5 + NaN NaN 106136.2 NaN 19364 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23868 95.006 NaN 221580 35 0 31108 0.261 + 26635 SWPGLAVGNLF 11 61 580.8084015353306 1159.6022501374612 2 580.808837890625 MULTI HCD FTMS 0 0 0 23863 73956.515625 0.9318691733776021 1 -0.02947998046875 5 Unmodified _SWPGLAVGNLF_ ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2 22.65808497894818 0.2596617744649775 2 [YT][Y{I|L}]AV{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F} 9 7 + 34.855 0 0 3.0058 3.0058 88.723 0 0 0 1.3996998762537842 30.251218656855706 1.3996998762537842 34.85531242661758 0 1.4247425010840047 0 0.3494850021680094 0 [YT][Y{I|L}]AV{[{M(Oxidation (M))|F}H]|[RQ]}{M(Oxidation (M))|F} 3.0058 - 124 NaN NaN 130405 NaN 19365 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23869 95.009 NaN 207600 35 0 26887 0.261 + 11193 IYIWDLNNF 9 53 599.3004998777495 1196.586446822299 2 599.3014526367188 MULTI HCD FTMS 0 0 0 23863 43542.19921875 0.007886081618407004 58 -1.2361831665039062 6 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 66.45667989310934 0.010234776021261575 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 84.875 0 0 7.0931 7.0931 90.43 0 0 0 24.13734275855269 77.88540967689293 24.13734275855269 9.208187539523749 0 2.2302046884880937 1.6989700043360187 0 0 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F} 7.0931;6.3236;6.3236;5.5577 +;-;-;- + 172 NaN NaN 135429.9 NaN 19366 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23870 95.012 NaN 148680 35 0 20138 0.261 + -1 LFKCPRLI 8 47 523.8104456849037 1045.6063384366073 2 523.809814453125 MULTI HCD FTMS 0 0 0 23863 33583.71875 0.8809663849874558 -3 0.06529998779296875 7 Carbamidomethyl (C) _LFKC(Carbamidomethyl (C))PRLI_ REV__ENSG00000130147|ENST00000392011|SH3BP4 19.438996006549623 0.45076845602799126 2 EN{I|L}{I|L} 4 -1 30.904 0 0 2.9556 0 0 558.359666892775 0 558.359666892775 0 18.13990292387583 0 0 0 0.6747425010840047 0 0 0 EN{I|L}{I|L} 2.9556 - 74 NaN NaN 119574.2 NaN 19367 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23871 95.016 NaN 28807 35 0 4400.5 0.261 + -1 HMMFLKDKQ 9 25 605.2936518883423 NaN 0 605.2932739257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Oxidation (M) _HM(Oxidation (M))M(Oxidation (M))FLKDKQ_ REV__ENSG00000164053|ENST00000320211|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-2|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-3|ATRIP;REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93709.8 NaN 19368 4501 23863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23873 95.02 NaN 125740 35 0 21903 0.327 + 10421 IPADIVFVL 9 37 493.79970955712827 985.5848661810566 2 493.7997131347656 MULTI HCD FTMS 0 0 0 23872 37088.4140625 0.04403105789985934 11 -0.261566162109375 1 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 15.847184025352803 0.2234401846867398 2 V{M(Oxidation (M))|F}V{I|L} 4 5 36.96 0 0 3.7501 0 0 509.28425795722814 0 509.28425795722814 0 32.35604130116801 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 3.7501 + + 23 NaN NaN 125637.6 NaN 19369 4502 23872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23874 95.025 NaN 377120 35 0 53950 0.261 + 6097 FPEEVIATIF 10 57 583.3103290180842 1164.6061051029683 2 583.3108520507812 MULTI HCD FTMS 0 0 0 23872 71157.5234375 0.16285776213265038 17 -0.40805816650390625 2 Unmodified _FPEEVIATIF_ ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 47.748688679222035 0.08597705450879027 2 {I|L}AT{I|L}{M(Oxidation (M))|F} 5 5 58.716 0 0 5.0417 0 0 601.2756214826187 0 601.2756214826187 0 20.07892723849615 0 0 0 2.1989700043360187 0 0.805462187404089 0 + {I|L}AT{I|L}{M(Oxidation (M))|F} 5.0417 + + 139 NaN NaN 161582.8 NaN 19370 4502 23872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23875 95.028 NaN 108690 35 0 27327 0.264 + 4283 EVLQFQLDHSS 11 37 434.8822278377371 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 23872 52234.921875 0.4937968071784276 52 -1.1128616333007812 3 Unmodified _EVLQFQLDHSS_ REV__ENSG00000119720|ENST00000354366|NRDE2 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 123567.7 NaN 19371 4502 23872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23876 95.032 NaN 151690 35 0 22522 0.261 + 26255 SQLFVSLIF 9 53 527.3026485312274 1052.5907441292547 2 527.302978515625 MULTI HCD FTMS 0 0 0 23872 15231.865234375 0.01723975346026146 19 -0.46009063720703125 4 Unmodified _SQLFVSLIF_ chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|11 37.97399986684836 0.07464525285885698 2 DS{I|L}{I|L}{M(Oxidation (M))|F} 5 5 47.779 0 0 4.5392 0 0 459.28515438491723 0 459.28515438491723 0 23.310384486277798 0 0 0 1.3494850021680094 0 0.7742275032520141 0 DS{I|L}{I|L}{M(Oxidation (M))|F} 4.5392 - 288 + NaN NaN 139775.6 NaN 19372 4502 23872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23877 95.035 NaN 287380 35 0 28085 0.261 + 3514 EICEFTIEF 9 72 565.7576317384652 1129.5007105437303 2 565.7572021484375 MULTI HCD FTMS 0 0 0 23872 81636.2890625 0.6991309240693454 -4 0.09477996826171875 5 Unmodified _EICEFTIEF_ REV__ENSG00000111875|ENST00000229595|ASF1A;REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF 28.486842064014134 0.11819662193267319 2 E{I|L}{M(Oxidation (M))|F} 3 -1 41.753 0 0 3.6965 0 0 722.2943554112734 0 722.2943554112734 0 17.59582170060014 0 0 0 1.3807196863200843 0 0.3252574989159953 0 E{I|L}{M(Oxidation (M))|F} 3.6965 - 274 NaN NaN 141605.4 NaN 19373 4502 23872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23879 95.04 NaN 460100 35 0 47749 0.327 -1 0 64 622.8019025252823 1243.5892521173646 2 622.8018188476562 MULTI HCD FTMS 0 0 0 23878 209366.09375 0.23157044275041347 -18 0.41950225830078125 1 NaN NaN 2 PTP{M(Oxidation (M))|F}DPE 7 -1 71.701 0 0 5.7656 0 0 442.21882826972814 0 442.21882826972814 0 43.244944827498415 0 0 0 1.610924374808178 0 0.75 0 PTP{M(Oxidation (M))|F}DPE 5.7656 - 326 NaN NaN 171307.4 NaN 19374 4503 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23880 95.044 NaN 378760 35 0 48186 0.261 + -1 YLLCGLSWLD 10 52 620.3082305409291 1238.6019081486581 2 620.32373046875 MULTI HCD FTMS 0 0 0 23878 11003.4228515625 0.080807940777484 11 -0.26824951171875 2 Carbamidomethyl (C) _YLLC(Carbamidomethyl (C))GLSWLD_ REV__ENSG00000168038|ENST00000301831|ULK4 3.5964929083625545 0.45626689593999237 2 [Y{I|L}]{I|L} 3 -1 24.437 0 0 1.9729 0 0 0 846.3476046197874 846.3476046197874 17.447274948966935 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L} 1.9729 + + 17 + NaN NaN 163480 NaN 19375 4503 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23881 95.048 NaN 672250 35 0 77757 0.262 + 15115 LMIYRFCL 8 69 529.7803786289137 1057.5462043246273 2 529.7813720703125 MULTI HCD FTMS 0 0 0 23878 55705.62890625 0.21492501533947042 8 -0.19956207275390625 3 Unmodified _LMIYRFCL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|268|3|anti-sense 19.438996006549623 0.45076845602799126 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PT 6 5 46.375 0 0 4.3852 0 0 0 350.2051233282837 350.2051233282837 22.174617874626037 0 0 0 0 0.5 1.6989700043360187 0.5 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PT 4.3852 - 1199 NaN NaN 188280.5 NaN 19376 4503 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23882 95.051 NaN 110370 35 0 13167 0.261 + 5922 FPDLPFTDEL 10 39 597.2900039939598 1192.5654550547195 2 597.29150390625 MULTI HCD FTMS 0 0 0 23878 12681.64453125 0.06478332463968589 20 -0.4725799560546875 4 Unmodified _FPDLPFTDEL_ ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF 16.149105407346934 0.3600587335443843 2 PDE{I|L} 4 6 32.167 0 0 2.6973 0 0 720.3328534595968 0 720.3328534595968 0 25.204262829037845 0 0 0 0.5 0 0 0 PDE{I|L} 2.6973 - 18 NaN NaN 112843.8 NaN 19377 4503 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23883 95.055 NaN 181710 35 0 23139 0.261 + 29712 VDFPQGKVME 10 55 575.2844113968334 1148.5542698604668 2 575.2847900390625 MULTI HCD FTMS 0 0 0 23878 36291.5859375 0.8094689608099633 18 -0.440521240234375 5 Unmodified _VDFPQGKVME_ REV__ENSG00000102882|ENST00000263025|MAPK3;REV__nc|ENSG00000102882|P27361-2|MAPK3;REV__nc|ENSG00000102882|P27361-3|MAPK3 8.155526934196011 0.43213520406898465 2 R{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 5 -1 31.542 0 0 2.7463 0 0 388.21047210831676 0 388.21047210831676 0 7.385606273598313 0 0 0 0 0 0.5 0 R{M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 2.7463 - 83 + NaN NaN 111390 NaN 19378 4503 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23884 95.058 NaN 132050 35 0 16296 0.262 + 31969 VYPGLAVFF 9 48 506.7787093309149 1011.5428657286299 2 506.7787780761719 MULTI HCD FTMS 0 0 0 23878 14557.3583984375 0.27193393101121305 -13 0.30178070068359375 6 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 36.466142684027034 0.08156716203802528 2 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 46.542 0 0 4.6011 0 0 529.2910554629412 0 529.2910554629412 0 46.453650195120844 0 0 0 2 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.6011 + + 22 + NaN NaN 107901.4 NaN 19379 4503 23878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23886 95.063 NaN 3152500 35 0 409850 0.327 + 5866 FPDFPTPGVVF 11 82 611.8110145244015 1221.6074761156028 2 611.8113403320312 MULTI HCD FTMS 0 0 0 23885 2143309.75 0.3695978165323267 -17 0.3933258056640625 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 66.45667989310934 0.018758930405316187 2 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PT[PG]VV{M(Oxidation (M))|F} 11 2 + 57.994 0 0 4.7474 4.7474 88.672 0 0 0 4.981979378655872 40.03524492039251 4.981979378655872 14.771212547196626 0 2.079689690656103 0 1.1747425010840047 0 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PT[PG]VV{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F}[PG]VV{M(Oxidation (M))|F};EE[W{I|L}]{M(Oxidation (M))|F}[PG]VV{M(Oxidation (M))|F};[YV]{[ES]|[DT]|[{I|L}C]}P[WP]VV{M(Oxidation (M))|F} 4.7474;3.5382;2.7905;1.6869 -;-;-;- 533 NaN NaN 582001.5 NaN 19380 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23887 95.067 NaN 430710 35 0 78010 0.262 + 10099 IFGVIIDTF 9 64 512.7893504792102 1023.5641480252203 2 512.7894897460938 MULTI HCD FTMS 0 0 0 23885 121497.0546875 0.12593418839796686 19 -0.44971466064453125 2 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 101.72198241140316 0.004218805956062179 2 {I|L}{I|L}DT{M(Oxidation (M))|F} 5 4 62.027 0 0 6.0599 0 0 416.24301184178256 0 416.24301184178256 0 36.620768972555595 0 0 0 2.2302046884880937 0 1.2302046884880937 0 + {I|L}{I|L}DT{M(Oxidation (M))|F} 6.0599 + + 186 + NaN NaN 174856.3 NaN 19381 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23888 95.071 NaN 246270 35 0 59233 0.261 + 11294 IYLTFPVAMF 10 46 609.3174773071619 1216.6204016811237 2 609.3179321289062 MULTI HCD FTMS 0 0 0 23885 81228.3671875 0.05508531193837753 13 -0.32363128662109375 3 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 92.8221339359638 0.000785806387253049 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 95.054 0 0 7.813 7.813 97.036 0 0 0 22.754537344402905 91.55964078789054 22.754537344402905 95.05449080957064 0 2.4247425010840047 1.6989700043360187 1.1421590589602533 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.813 + + 125 NaN NaN 145386.6 NaN 19382 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23889 95.074 NaN 607290 35 0 125120 0.261 + 28269 TLMEEVLLL 9 58 530.8015651826227 1059.5885774320452 2 530.8019409179688 MULTI HCD FTMS 0 0 0 23885 159610.921875 0.3573595447168078 -3 0.0719146728515625 4 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 28.486842064014134 0.11819662193267319 2 D{M(Oxidation (M))|F}PV{I|L}{I|L}{I|L} 7 4 52.968 0 0 4.9989 0 0 244.1210652082047 0 244.1210652082047 0 32.33340599789392 0 0 0 1.5 0 0.28872548999643577 0 D{M(Oxidation (M))|F}PV{I|L}{I|L}{I|L} 4.9989 - 304 NaN NaN 203237.5 NaN 19383 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23890 95.077 NaN 262720 35 0 31165 0.261 -1 YLGYPVLQI 9 54 554.3077896488119 1106.6010263644237 2 554.3076782226562 MULTI HCD FTMS 0 0 0 23885 101562.7734375 0.03828279566371352 21 -0.48499298095703125 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))YLGYPVLQI_ ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.E1153K|1|0.36|ENSG00000122778|chr7:138906922-138906922|C/T|missense_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549 28.486842064014134 0.11819662193267319 2 V{I|L}Q{I|L} 4 -1 46.186 0 0 4.1736 0 0 635.2965462865013 0 635.2965462865013 0 24.503187623076954 0 0 0 1.4247425010840047 0 0 0 V{I|L}Q{I|L} 4.1736 + + 88 NaN NaN 155524.5 NaN 19384 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23891 95.081 NaN 133270 35 0 24963 0.261 + 6133 FPEGLFYEF 9 40 574.7685982649667 1147.5226435967334 2 574.7686157226562 MULTI HCD FTMS 0 0 0 23885 48425.01953125 0.014817741329234245 67 -1.3664169311523438 6 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 41.983 0 0 3.6585 0 0 543.2699160733135 0 543.2699160733135 0 41.9825221775622 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 3.6585 + + 17 NaN NaN 117287.3 NaN 19385 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23892 95.084 NaN 101640 35 0 18773 0.261 + 6294 FPFNPLDF 8 37 498.744888759462 995.475224585724 2 498.7451477050781 MULTI HCD FTMS 0 0 0 23885 24892.080078125 0.03497452223160676 15 -0.36562347412109375 7 Unmodified _FPFNPLDF_ ENSG00000164611|ENST00000352433|PTTG1;ENST00000519287.1_1_5:159849240-159855685:+|nuORF 11.640296217721598 0.50814828952472 2 D{M(Oxidation (M))|F} 2 6 30.217 0 0 3.0354 0 0 715.3706257372264 0 715.3706257372264 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 + D{M(Oxidation (M))|F} 3.0354 + + 6 NaN NaN 106534.1 NaN 19386 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23893 95.087 NaN 75687 35 0 6690.1 0.261 -1 LPIGMKMHVF 10 43 602.8159366490551 NaN 0 602.3919067382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Oxidation (M) _LPIGM(Oxidation (M))KM(Oxidation (M))HVF_ ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1 3.5964929083625545 0.337106189561315 2 TP 2 -1 7.9588 0 0 0.66124 0 0 166.07418179244752 836.3961886041624 1002.47037039661 0 0 0 0 0 0 0 0 0 TP 0.66124 - 7 + NaN NaN 104528.1 NaN 19387 4504 23885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23895 95.092 NaN 1090500 35 0 200910 0.326 + 7620 FYIESISFL 9 83 559.7919037220136 1117.569254510827 2 559.7921142578125 MULTI HCD FTMS 0 0 0 23894 393769.75 0.5296386028330041 -2 0.0523681640625 1 Unmodified _FYIESISFL_ ENSG00000114541|ENST00000398540|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 125.62461146993168 0.0008703235425492373 2 [Y{I|L}]{M(Oxidation (M))|F}TD{I|L}S{M(Oxidation (M))|F}{I|L} 9 4 + 87.405 0 0 7.821 7.821 87.871 0 0 0 1.7212228233769622 16.478174818886373 1.7212228233769622 1.7212228233769622 0 1.8494850021680094 1.154901959985743 1.6549471895720984 0 [Y{I|L}]{M(Oxidation (M))|F}TD{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}TD{I|L}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]{I|L}S{M(Oxidation (M))|F}{I|L};[Y{I|L}]{M(Oxidation (M))|F}T{I|L}DS{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}T{I|L}DS{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}ES{I|L}S{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}S{I|L}S{M(Oxidation (M))|F}{I|L};[Y{I|L}]A[YE]{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}ESTV{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}{I|L} 7.821;7.667;7.3275;6.7636;6.6096;6.2318;6.1707;6.0325;4.7549;4.5694 -;-;-;-;-;-;-;-;-;- 1230 NaN NaN 262523.2 NaN 19388 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23896 95.097 NaN 405680 35 0 103800 0.261 + 1098 AYILDTLVF 9 50 527.7947540371769 1053.5749551411536 2 527.7946166992188 MULTI HCD FTMS 0 0 0 23894 224921.671875 0.15225529912381253 -6 0.13082122802734375 2 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 92.8221339359638 0.0044520161739443126 2 [{I|L}V]T{M(Oxidation (M))|F}DT{I|L}V{M(Oxidation (M))|F} 9 4 + 89.637 0 0 8.5079 8.5079 90.594 0 0 0 8.943248821684406 69.28211852677514 8.943248821684406 6.00833760139686 0 2.4247425010840047 1.2218487496163564 1.110924374808178 0 [{I|L}V]T{M(Oxidation (M))|F}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TD{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{I|L}{[ES]|[DT]|[{I|L}C]} 8.5079;7.9376;2.3988 -;-;- 263 NaN NaN 166789.2 NaN 19389 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23897 95.1 NaN 131010 35 0 8544 0.261 -1 0 51 451.93261201226846 1352.7760066370054 3 451.9326171875 MULTI HCD FTMS 0 0 0 23894 118303 0.19353826792959591 45 -0.9453964233398438 3 NaN NaN 2 V 1 -1 3.0989 0 0 0.22908 0 0 762.4252508770429 488.25580774478755 1250.6810586218305 0 0 0 0 0 0 0 0 0 V 0.22908 - 3 + NaN NaN 110708.8 NaN 19390 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23898 95.104 NaN 279050 35 0 17369 0.261 + 22511 QRRVRPALP 9 80 546.8406491660796 1091.6667453989592 2 546.8404541015625 MULTI HCD FTMS 0 0 0 23894 141718.953125 0.2528698596956243 -8 0.17633056640625 4 Unmodified _QRRVRPALP_ ENST00000546828.6_1_12:98909466-98909845:+|nuORF 16.942295170755138 0.21397866736869717 2 A 1 8 10.841 0 0 0.99309 0 0 325.21212386350095 692.4072871158492 1017.61941097935 0 0 0 0 0 0.7742275032520141 0 0 0 + A 0.99309 + + 29 + NaN NaN 135608.9 NaN 19391 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23899 95.107 NaN 156140 35 0 13702 0.261 + 14402 LEKLQREKDKK 11 58 472.283751677077 1413.8294256314311 3 472.2834167480469 MULTI HCD FTMS 0 0 0 23894 59334.75390625 0.1328931254790897 -16 0.3737640380859375 5 Unmodified _LEKLQREKDKK_ REV__ENSG00000272514|ENST00000369562|CFAP206;REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF;REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF 0.40826533853263924 0.41713015341995335 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 108845.4 NaN 19392 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23900 95.11 NaN 128670 35 0 5968.1 0.261 + 23267 RGRVYRRRSRP 11 57 486.9590278463644 1457.8552541392933 3 486.95855712890625 MULTI HCD FTMS 0 0 0 23894 52311.6796875 0.6323511621193049 -5 0.12378692626953125 6 Unmodified _RGRVYRRRSRP_ REV__ENSG00000166851|ENST00000300093|PLK1 0.09484139111097674 0.41850472438158626 2 C 1 -1 3.4949 0 0 0.23973 0 0 940.5893982816746 411.2236615354255 1351.8130598171 0 0 0 0 0 0 0 0 0 C 0.23973 - 4 + NaN NaN 133563.6 NaN 19393 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23901 95.114 NaN 100850 35 0 15310 0.261 + 5599 FLQRAWLI 8 42 523.8104456849037 1045.6063384366073 2 523.8115234375 MULTI HCD FTMS 0 0 0 23894 15633.517578125 0.4100976299844289 1 -0.0328216552734375 7 Unmodified _FLQRAWLI_ REV__ENSG00000039139|ENST00000265104|DNAH5 5.230669730166228 0.5342319408533849 2 A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 18.672 0 0 1.7858 0 0 662.4231546981292 0 662.4231546981292 0 0.0886438348021592 0 0 0 0 0 0 0 A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.7858 - 20 + NaN NaN 112002.6 NaN 19394 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23902 95.117 NaN 241020 35 0 20356 0.262 -1 YKCNACGKVF 10 55 416.19522829575646 NaN 0 416.1953125 PEAK HCD FTMS 0 0 0 23894 34581.73828125 0.4319482734998831 -6 0.13082122802734375 8 2 Carbamidomethyl (C) _YKC(Carbamidomethyl (C))NAC(Carbamidomethyl (C))GKVF_ ENSG00000167554|ENST00000403906|ZNF610;nc|ENSG00000167554|Q8N9Z0-2|ZNF610 6.630372943996041 0.3345096087358732 2 V 1 -1 6.9897 0 0 0.84175 0 0 566.2286412123883 162.05579553775627 728.2844367501446 0 0 0 0 0 0 0 0 0 V 0.84175 + + 3 + NaN NaN 144193.9 NaN 19395 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23903 95.12 NaN 42202 35 0 4080 0.261 -1 LCFCFRWL 8 26 601.2886990939544 NaN 0 601.7615356445312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))FC(Carbamidomethyl (C))FRWL_ ENSG00000104946|ENST00000221543|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF;ENST00000600354.1_1_19:50390695-50391878:+|nuORF;nc|ENSG00000104946|Q9HA65-2|TBC1D17;nc|ENSG00000104946|Q9HA65-3|TBC1D17 2.302733041254933 0.38822285293237185 2 W 1 -1 6.9897 0 0 0.5822 0 0 131.09371774564312 880.3655489557249 1011.459266701368 0 0 0 0 0 0 0 0 0 W 0.5822 + + 1 + NaN NaN 107416.4 NaN 19396 4505 23894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23905 95.125 NaN 898210 35 0 102200 0.326 + 32031 VYPLYTIVF 9 65 557.8127009041965 1113.610848875193 2 557.8131103515625 MULTI HCD FTMS 0 0 0 23904 418249.0625 0.6206439130109774 6 -0.13393402099609375 1 Unmodified _VYPLYTIVF_ ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP 106.8454739257335 0.003457388669738163 2 [YV]P{I|L}YT{I|L}V{M(Oxidation (M))|F} 9 0 + 90.155 0 0 8.0958 8.0958 96.125 0 0 0 9.488474775526186 57.19196463259358 9.488474775526186 34.00637524615391 0 2.3494850021680094 1.3010299956639813 1.079689690656103 0 + + [YV]P{I|L}YT{I|L}V{M(Oxidation (M))|F};[YV]P{I|L}[{I|L}T]YV{M(Oxidation (M))|F};[YV]P{I|L}YVV[YV];[YV]P{I|L}[{I|L}T]{M(Oxidation (M))|F}[YV] 8.0958;5.0421;2.5915;1.7141 +;-;-;- + 522 NaN NaN 218891.5 NaN 19397 4506 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23906 95.13 NaN 681420 35 0 34763 0.261 -1 0 93 538.3271714233399 1074.6397899134797 2 538.3273315429688 MULTI HCD FTMS 0 0 0 23904 307147.28125 0.4312114134802493 -5 0.13423919677734375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.2558 0 0 909.560945774611 0 909.560945774611 0 -1.6824376479242176 -1.6824376479242176 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2558 - 248 + NaN NaN 191729.8 NaN 19398 4506 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23907 95.133 NaN 266000 35 0 44049 0.261 -1 LQMHRDEEDS 10 41 638.2666900786223 1274.5188272240446 2 638.266845703125 MULTI HCD FTMS 0 0 0 23904 69348.59375 0.2952436824227396 -15 0.3531646728515625 3 Oxidation (M) _LQM(Oxidation (M))HRDEEDS_ ENSG00000160401|ENST00000373295|CFAP157 1.3295316138638542 0.46826628246186464 2 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3568191235682 0 939.3568191235682 0 23.187587626244124 0 0 0 0 0 0 0 VMS 1.8193 - 9 NaN NaN 127934.3 NaN 19399 4506 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23908 95.136 NaN 445880 35 0 80590 0.261 + -1 MYMKSCLIY 9 59 584.268232468468 1166.521912003736 2 584.2892456054688 MULTI HCD FTMS 0 0 0 23904 30030.646484375 0.7804008953676368 10 -0.22879791259765625 4 Oxidation (M) _MYM(Oxidation (M))KSCLIY_ REV__ENST00000371175.8_1_6:49587051-49604449:-|nuORF 15.847184025352803 0.2234401846867398 2 MY{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 34.464 0 0 2.9544 0 0 0 462.15839563541255 462.15839563541255 12.40241254086228 0 0 0 0 0 0 0 0 MY{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9544 - 246 + NaN NaN 166133.4 NaN 19400 4506 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23909 95.14 NaN 176270 35 0 38840 0.261 -1 YLLFTYNCC 9 63 598.759748264107 1195.5049435950139 2 598.7597045898438 MULTI HCD FTMS 0 0 0 23904 35218.64453125 0.620020164469506 1 -0.01953887939453125 5 Carbamidomethyl (C) _YLLFTYNC(Carbamidomethyl (C))C_ ENSG00000177697|ENST00000397420|CD151;ENST00000530155.5_1_11:832961-836303:+|nuORF;ENST00000531999.5_1_11:834538-836303:+|nuORF;ENST00000532045.5_1_11:834538-836571:+|nuORF 5.230669730166228 0.3113646817964458 2 [Y{I|L}]{I|L}W{NN|[MP]|[D{I|L}]|[EV]}D{I|L} 8 -1 33.109 0 0 2.7695 0 0 0 160.97391267143885 160.97391267143885 17.53591878376909 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L}W{NN|[MP]|[D{I|L}]|[EV]}D{I|L} 2.7695 - 182 NaN NaN 142607.3 NaN 19401 4506 23904 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23911 95.145 NaN 1018200 35 0 120590 0.327 + 30554 VNFEFPEFQL 10 88 635.3111903128189 1268.6078276924377 2 635.31103515625 MULTI HCD FTMS 0 0 0 23910 548983.25 0.6788785054818948 -4 0.10472869873046875 1 Unmodified _VNFEFPEFQL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000484240.1_1_17:44798950-44799232:-|nuORF 87.12335221954112 0.0012232043428923125 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 10 4 + 81.455 0 0 6.4208 6.4208 85.739 0 0 0 2.636284439750426 15.982036305339918 2.636284439750426 2.636284439750426 0 1.610924374808178 0 1.2059771852360797 1.2931576817365436 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]NV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}V]NE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VPE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DVE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}Q{I|L} 6.4208;6.213;6.1918;5.9462;5.8116;5.7006;5.6984;5.6822;5.4906;5.4811 -;+;-;-;-;-;-;-;-;- + 5280 NaN NaN 261977.2 NaN 19402 4507 23910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23912 95.149 NaN 343460 35 0 58276 0.261 + -1 YQERFAMF 8 56 554.2502565164807 1106.4859600997613 2 554.2503051757812 MULTI HCD FTMS 0 0 0 23910 81491.203125 0.5947748136309824 -4 0.10472869873046875 2 Oxidation (M) _YQERFAM(Oxidation (M))F_ REV__ENSG00000148200|ENST00000487099|NR6A1;REV__nc|ENSG00000148200|Q15406-2|NR6A1;REV__nc|ENSG00000148200|Q15406-3|NR6A1;REV__nc|ENSG00000148200|Q15406-4|NR6A1;REV__nc|ENSG00000148200|Q15406-5|NR6A1 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 -1 18.411 0 0 1.6639 0 0 941.407695794877 0 941.407695794877 0 1.4165061435177506 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.6639 + + 64 + NaN NaN 153672.7 NaN 19403 4507 23910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23913 95.153 NaN 97427 35 0 12425 0.262 + 4031 ERVLRSIEQKL 11 47 457.60827744250093 1369.803002927703 3 457.60809326171875 MULTI HCD FTMS 0 0 0 23910 31824.73828125 0.086093322327545 42 -0.8853607177734375 3 Unmodified _ERVLRSIEQKL_ REV__ENSG00000178573|ENST00000326043|MAF;REV__nc|ENSG00000178573|O75444|MAF 0.5059551277355931 0.4167017191902429 2 M 1 -1 3.0989 0 0 0.22623 0 0 759.4552378903967 476.2928866022094 1235.7481244926062 0 0 0 0 0 0 0 0 0 M 0.22623 - 2 + NaN NaN 120555.1 NaN 19404 4507 23910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23914 95.156 NaN 103550 35 0 18469 0.261 + 4891 FAFVEFEL 8 25 501.252669970674 1000.490787008148 2 501.25299072265625 MULTI HCD FTMS 0 0 0 23910 76689.953125 0.37217408302932126 10 -0.24176788330078125 4 Unmodified _FAFVEFEL_ ENSG00000084072|ENST00000324379|PPIE;ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE 36.04419817259434 0.28174663821216267 2 E{M(Oxidation (M))|F}E{I|L} 4 4 45.745 0 0 4.5723 0 0 464.24144179511876 0 464.24144179511876 0 43.75569708000178 0 0 0 1.3807196863200843 0 0 0 + E{M(Oxidation (M))|F}E{I|L} 4.5723 + + 46 NaN NaN 114175.6 NaN 19405 4507 23910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23915 95.159 NaN 200140 35 0 29667 0.261 + 11194 IYIWDLNNF 9 57 599.3004998777495 1196.586446822299 2 599.3027954101562 MULTI HCD FTMS 0 0 0 23910 57669.78515625 0.010444778647339075 64 -1.2845535278320312 5 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 70.33199760932243 0.0089807860198535 2 [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F} 9 0 + 92.814 0 0 7.7566 7.7566 91.653 0 0 0 7.073259432077563 7.073259432077563 7.073259432077563 9.208187539523749 0 2.774227503252014 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}WD{I|L}NN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}NGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}WD{I|L}GGGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{NN|[MP]|[D{I|L}]|[EV]}WNN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{NN|[MP]|[D{I|L}]|[EV]}WNGG{M(Oxidation (M))|F};[Y{I|L}]{I|L}{NN|[MP]|[D{I|L}]|[EV]}WGGN{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}[WD]N{M(Oxidation (M))|F} 7.7566;6.987;6.987;6.2211;4.9867;4.2172;4.2172;2.183 +;-;-;-;-;-;-;- + 295 NaN NaN 116896.6 NaN 19406 4507 23910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23916 95.163 NaN 154900 35 0 30004 0.261 + 5140 FEVFVDTII 9 39 541.7922926675576 1081.5700324019151 2 541.792724609375 MULTI HCD FTMS 0 0 0 23910 57917.234375 1 0 0 6 Unmodified _FEVFVDTII_ tr|U7T6J7|U7T6J7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00264PE=3SV=1 11.640296217721598 0.25978676193971967 2 {I|L}{I|L}{I|L} 3 7 31.198 0 0 2.8845 0 0 724.3065663068375 0 724.3065663068375 0 18.098943791441968 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 2.8845 - 14 NaN NaN 126438 NaN 19407 4507 23910 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23918 95.168 NaN 300680 35 0 71900 0.327 + 5914 FPDLFVADFCS 11 52 420.85852526012 1259.5537463805601 3 420.8583984375 MULTI HCD FTMS 0 0 0 23917 63507.81640625 0.2958803836741011 -12 0.28772735595703125 1 Unmodified _FPDLFVADFCS_ REV__ENSG00000244122|ENST00000373426|UGT1A7;REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 9.764250979337305 0.37200617284565546 2 DPE 3 -1 37.065 0 0 2.9427 0 0 900.4039837363961 0 900.4039837363961 0 23.877268672201453 0 0 0 0.7059771852360797 0 0.3807196863200844 0 DPE 2.9427 - 32 NaN NaN 138175 NaN 19408 4508 23917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23919 95.172 NaN 124740 35 0 14322 0.261 -1 YPFLLVGDLM 10 37 592.3073986493324 1182.6002443654647 2 592.3068237304688 MULTI HCD FTMS 0 0 0 23917 36294.5703125 0.05118872256921208 37 -0.7876205444335938 2 Oxidation (M) _YPFLLVGDLM(Oxidation (M))_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 30.636539890814138 0.2266618088935899 2 V{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F} 6 -1 40.406 0 0 3.4167 0 0 450.1778427281127 0 450.1778427281127 0 36.42667503568731 0 0 0 1.5 0 0 0 V{I|L}{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F} 3.4167 - 28 NaN NaN 108647 NaN 19409 4508 23917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23920 95.176 NaN 96135 35 0 22204 0.264 + 23492 RMEKIYYNW 9 40 434.8822278377371 NaN 0 434.88214111328125 PEAK HCD FTMS 0 0 0 23917 48030.66015625 0.4540523041000215 58 -1.1684951782226562 3 Unmodified _RMEKIYYNW_ tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1 0.9622753412299311 0.2905837902567025 2 W 1 8 0.48455 0 0 0.05584 0 0 307.48575586903047 371.1498201959594 678.6355760649899 0 0 0 0 0 0 0 0 0 + W 0.05584 + + 2 + NaN NaN 112705 NaN 19410 4508 23917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23921 95.179 NaN 182190 35 0 28028 0.261 + 10422 IPADIVFVL 9 46 493.79970955712827 985.5848661810566 2 493.7997741699219 MULTI HCD FTMS 0 0 0 23917 35535.95703125 0.04218799377436665 17 -0.38024139404296875 4 Unmodified _IPADIVFVL_ ENSG00000132002|ENST00000254322|DNAJB1;ENSG00000137094|ENST00000682809|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;nc|ENSG00000137094|O75953-5|DNAJB5;nc|ENSG00000137094|O75953|DNAJB5 15.847184025352803 0.2234401846867398 2 V{M(Oxidation (M))|F}V{I|L} 4 5 36.542 0 0 3.7077 0 0 509.2849293439469 0 509.2849293439469 0 30.088643834802156 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 3.7077 + + 44 NaN NaN 108374.8 NaN 19411 4508 23917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23922 95.182 NaN 39061 35 0 6356.7 0.261 + -1 WKMKVKAI 8 26 510.30657958984375 NaN 0 510.30657958984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _WKM(Oxidation (M))KVKAI_ REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100155.9 NaN 19412 4508 23917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23923 95.186 NaN 103590 35 0 6958.9 0.261 + 9875 IAFEYKISSF 10 40 602.8159366490551 NaN 0 602.8150634765625 PEAK HCD FTMS 0 0 0 23917 17134.951171875 0.3714552300736518 -3 0.07524871826171875 6 Unmodified _IAFEYKISSF_ REV__ZNF462|p.D64Y|1|0.08|ENSG00000148143|chr9:106923573-106923573|G/T|missense_variant 5.731851221503515 0.33527861879838866 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.45567 0 0 204.17911635262993 836.4016207330686 1040.5807370856985 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.45567 - 10 + NaN NaN 124643.2 NaN 19413 4508 23917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23925 95.19 NaN 712040 35 0 78230 0.327 -1 0 67 622.8019025252823 1243.5892521173646 2 622.8019409179688 MULTI HCD FTMS 0 0 0 23924 382364 0.42291566502429 -12 0.27443695068359375 1 NaN NaN 2 TP{M(Oxidation (M))|F}DPE 6 -1 70.623 0 0 5.6789 0 0 539.2646621191703 0 539.2646621191703 0 34.392653074926045 0 0 0 1.610924374808178 0 1.0356668758921828 0 TP{M(Oxidation (M))|F}DPE 5.6789 - 746 NaN NaN 203835.4 NaN 19414 4509 23924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23926 95.195 NaN 617410 35 0 82203 0.261 -1 VMICLRVCVF 10 49 620.3242048927079 1238.6338568522158 2 620.323974609375 MULTI HCD FTMS 0 0 0 23924 339163.5 0.3978930924112158 -12 0.27443695068359375 2 Carbamidomethyl (C) _VMICLRVC(Carbamidomethyl (C))VF_ ENST00000471841.5_1_3:179109981-179110074:+|nuORF 6.723162845929126 0.4397169348982109 2 V[RP]TP{M(Oxidation (M))|F} 6 -1 25.323 0 0 2.0444 0 0 182.10698408482978 356.12522302799067 538.2322071128204 0 0 0 0 0 0 0 1.1421590589602533 0 V[RP]TP{M(Oxidation (M))|F} 2.0444 - 64 + NaN NaN 210531 NaN 19415 4509 23924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23927 95.198 NaN 237700 35 0 33772 0.261 + 10720 IQKPVRRGR 9 77 555.3537476405379 1108.6929423478757 2 555.3539428710938 MULTI HCD FTMS 0 0 0 23924 68947.9453125 0.5552872591073386 -2 0.045745849609375 3 Unmodified _IQKPVRRGR_ SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|50|2|anti-sense 4.3292370932331545 0.3181982124262546 2 Q{I|L}V 3 7 14.693 0 0 1.3252 0 0 132.1834951816632 633.2727755182249 765.4562706998881 0 0 0 0 0 0 0 0 0 Q{I|L}V 1.3252 - 70 + NaN NaN 131215.1 NaN 19416 4509 23924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23928 95.202 NaN 242460 35 0 26698 0.261 + 25166 SAKPLDLCVT 10 53 523.7805994333332 1045.5466459334664 2 523.7642822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SAKPLDLCVT_ REV__ENSG00000187954|ENST00000530374|ZFTRAF1;REV__ENST00000528558.1_1_8:145677565-145687797:-|nuORF 6.723162845929126 0.4397169348982109 2 {I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 -1 34.959 0 0 3.3436 0 0 436.1963174195976 0 436.1963174195976 0 19.386218330464622 0 0 0 0.23965182871044374 0 0 0 {I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3436 - 33 + NaN NaN 141074.9 NaN 19417 4509 23924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23929 95.205 NaN 433870 35 0 98741 0.261 + 25213 SAPMEGCFSSR 11 57 586.2474274285988 1170.4803019239976 2 586.7490234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _SAPMEGCFSSR_ REV__ENSG00000110446|ENST00000227880|SLC15A3 2.282774691075616 0.408909192180357 2 [Y{M(Oxidation (M))|F}]A{I|L}{I|L} 5 -1 19.208 0 0 1.6411 0 0 0 560.1215504403511 560.1215504403511 0.1278813061184536 0 0 0 0 0 0 0 0 [Y{M(Oxidation (M))|F}]A{I|L}{I|L} 1.6411 - 153 NaN NaN 171595.5 NaN 19418 4509 23924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23930 95.208 NaN 119540 35 0 11942 0.261 + -1 PFTMMMFF 8 63 550.2189234501512 1098.4232939671024 2 550.217529296875 MULTI HCD FTMS 0 0 0 23924 16296.23828125 0.2541245687876055 -5 0.1276092529296875 6 3 Oxidation (M) _PFTM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))FF_ REV__ENSG00000148842|ENST00000369878|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 22.391 0 0 2.0384 0 0 786.2723866193375 0 786.2723866193375 0 15.400990676322905 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.0384 + + 24 NaN NaN 131864.3 NaN 19419 4509 23924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23932 95.213 NaN 4688100 35 0 635270 0.327 + 5867 FPDFPTPGVVF 11 70 611.8110145244015 1221.6074761156028 2 611.8114013671875 MULTI HCD FTMS 0 0 0 23931 3384561 0.5836423575829244 -11 0.2517852783203125 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 103.35351024395868 0.021349619833249373 2 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 11 2 + 77.97 0 0 6.3825 6.3825 91.203 0 0 0 4.357285695614365 60.546770144866315 4.357285695614365 14.393326938302621 0 2.3737125054200234 0 1.7302046884880937 0 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}[TP]{M(Oxidation (M))|F}PGVV{M(Oxidation (M))|F};[DP]{M(Oxidation (M))|F}[DV]{[RE]|[WV]}VV{M(Oxidation (M))|F};[DP][K{I|L}]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F} 6.3825;5.2043;2.6487;0.23257 -;-;-;- 432 NaN NaN 653638 NaN 19420 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23933 95.218 NaN 863390 35 0 190840 0.261 + 28270 TLMEEVLLL 9 51 530.8015651826227 1059.5885774320452 2 530.8015747070312 MULTI HCD FTMS 0 0 0 23931 320706.21875 0.7180425184819388 3 -0.06866455078125 2 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 21.74664581756881 0.17247014374749275 2 PV{I|L}{I|L}{I|L} 5 5 47.691 0 0 4.5009 0 0 506.21739394355626 0 506.21739394355626 0 41.519862825870675 0 0 0 1.4247425010840047 0 0 0 PV{I|L}{I|L}{I|L} 4.5009 - 92 NaN NaN 228606.3 NaN 19421 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23934 95.221 NaN 283840 35 0 32286 0.261 + 1308 AYNDNWFITF 10 68 645.7925078670975 1289.5704628009948 2 645.7930297851562 MULTI HCD FTMS 0 0 0 23931 88177.90625 0.009481481022501686 38 -0.7939376831054688 3 Unmodified _AYNDNWFITF_ ENSG00000107929|ENST00000316157|LARP4B 43.981846655682396 0.11085276043338313 2 W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 5 5 48.104 0 0 3.7302 0 0 577.2124500959 0 577.2124500959 0 29.38039076304328 0 0 0 1.8807196863200843 0 0 0 + W{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F} 3.7302 + + 201 NaN NaN 130836.1 NaN 19422 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23935 95.225 NaN 146170 35 0 21952 0.264 + 10100 IFGVIIDTF 9 43 512.7893504792102 1023.5641480252203 2 512.7891845703125 MULTI HCD FTMS 0 0 0 23931 74083.4921875 0.076789058683904 25 -0.5427627563476562 4 Unmodified _IFGVIIDTF_ ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-2|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1 28.486842064014134 0.11819662193267319 2 {I|L}{I|L}C{I|L}{M(Oxidation (M))|F} 5 6 42.167 0 0 4.1196 0 0 416.24080092597814 0 416.24080092597814 0 32.70303756120384 0 0 0 1.3494850021680094 0 0 0 {I|L}{I|L}C{I|L}{M(Oxidation (M))|F} 4.1196 - 36 NaN NaN 108751.5 NaN 19423 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23936 95.228 NaN 144000 35 0 14475 0.261 + 16843 LYEGVPLPFY 10 50 599.3144448543666 NaN 0 599.3011474609375 PEAK HCD FTMS 0 0 0 23931 6731.58984375 1 0 0 5 Unmodified _LYEGVPLPFY_ ENSG00000014138|ENST00000265465|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2 7.289230182591677 0.3339457182549222 2 NN{I|L}DW{I|L} 6 9 33.193 0 0 2.7739 0 0 165.11050484369554 273.12397180728755 438.2344766509831 0 0 0 0 0 0 0 0 0.3807196863200844 NN{I|L}DW{I|L} 2.7739 - 165 + NaN NaN 105422.7 NaN 19424 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23937 95.231 NaN 135160 35 0 19411 0.261 -1 IYSFLSLCF 9 45 575.2844113968334 1148.5542698604668 2 575.2688598632812 MULTI HCD FTMS 0 0 0 23931 19415.87890625 0.4330632270664811 25 -0.5427627563476562 6 Carbamidomethyl (C) _IYSFLSLC(Carbamidomethyl (C))F_ ENSG00000164855|ENST00000297477|TMEM184A;ENST00000474813.5_1_7:1589488-1595099:-|nuORF 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3482 0 0 983.4759597792153 0 983.4759597792153 0 2.2969624387961556 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3482 + + 28 + NaN NaN 108334.6 NaN 19425 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23938 95.235 NaN 125930 35 0 11293 0.262 -1 0 46 493.79970955712827 985.5848661810566 2 493.7992248535156 MULTI HCD FTMS 0 0 0 23931 25486.4765625 0.030257333821170195 19 -0.3961029052734375 7 NaN NaN 2 {M(Oxidation (M))|F}V{I|L} 3 -1 28.5 0 0 2.8917 0 0 608.3538685529312 0 608.3538685529312 0 15.524239832220132 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}V{I|L} 2.8917 - 24 NaN NaN 130416.1 NaN 19426 4510 23931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23940 95.24 NaN 2183800 35 0 550350 0.327 + 1099 AYILDTLVF 9 69 527.7947540371769 1053.5749551411536 2 527.7948608398438 MULTI HCD FTMS 0 0 0 23939 1477266.625 1 0 0 1 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 161.8943921545576 8.236690082142223E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F} 9 0 + 106.51 0 0 10.109 10.109 93.228 0 0 0 8.846434334517141 15.584683239754753 8.846434334517141 8.846434334517141 0 3.2302046884880937 1.3010299956639813 1.4361818737241734 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}DT{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}D{I|L}T{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}D{I|L}TV{M(Oxidation (M))|F};[{I|L}V]TD{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DTV{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}SE{I|L}V{M(Oxidation (M))|F};[{I|L}V]ES{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}D{I|L}TV{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}DTV{I|L}{M(Oxidation (M))|F} 10.109;9.2694;9.1345;8.8729;8.8663;8.8579;8.5843;8.517;8.0333;8.0182 +;-;-;-;-;-;-;-;-;- + 1254 NaN NaN 428661.9 NaN 19427 4511 23939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23941 95.244 NaN 830810 35 0 44670 0.261 + 22512 QRRVRPALP 9 101 546.8406491660796 1091.6667453989592 2 546.8406372070312 MULTI HCD FTMS 0 0 0 23939 503417.78125 0.8982509460162934 -2 0.0490875244140625 2 Unmodified _QRRVRPALP_ ENST00000546828.6_1_12:98909466-98909845:+|nuORF 16.942295170755138 0.21397866736869717 2 A 1 8 9.8708 0 0 0.90419 0 0 281.1843922782785 736.4328402447271 1017.6172325230057 0 0 0 0 0 0.7396518287104438 0 0 0 + A 0.90419 + + 95 + NaN NaN 221089.1 NaN 19428 4511 23939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23942 95.248 NaN 601440 35 0 130310 0.261 + 7621 FYIESISFL 9 64 559.7919037220136 1117.569254510827 2 559.792236328125 MULTI HCD FTMS 0 0 0 23939 429451.75 0.5776325501239965 4 -0.10482025146484375 3 Unmodified _FYIESISFL_ ENSG00000114541|ENST00000398540|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B 104.79918948944588 0.003791450360204016 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]{I|L}S{M(Oxidation (M))|F}{I|L} 9 2 + 79.843 0 0 7.1443 7.1443 87.249 0 0 0 3.0225622685225773 16.478174818886373 3.0225622685225773 3.0225622685225773 0 1.4247425010840047 1.6989700043360187 1.274227503252014 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[YE]{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]{I|L}TD{I|L}S{M(Oxidation (M))|F}{I|L};[Y{M(Oxidation (M))|F}]E{I|L}S{I|L}S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[R{M(Oxidation (M))|F}][KS]S{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[QN]|[E{I|L}]|[KN]}Y{M(Oxidation (M))|F}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[YE]{I|L};[Y{M(Oxidation (M))|F}]{I|L}T{[VA]|[{I|L}G]}[YE]{I|L} 7.1443;6.8739;5.6201;5.5579;4.8285;3.6871;1.6636 -;-;-;-;-;-;- 432 NaN NaN 196178.9 NaN 19429 4511 23939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23943 95.251 NaN 97020 35 0 6489.3 0.262 + 5450 FIKHFFIRFV 10 52 451.93261201226846 1352.7760066370054 3 451.9324951171875 MULTI HCD FTMS 0 0 0 23939 68692.3984375 0.11237760507783767 51 -1.0322799682617188 4 Unmodified _FIKHFFIRFV_ REV__ENSG00000168229|ENST00000306051|PTGDR 0.776531954647913 0.4711933975711956 2 C 1 -1 1.5938 0 0 0.11782 0 0 1026.5829352032147 220.16346155338127 1246.746396756596 0 0 0 0 0 0 0 0 0 C 0.11782 - 7 + NaN NaN 112334 NaN 19430 4511 23939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23944 95.254 NaN 79907 35 0 8908.1 0.261 + 10627 IPRTLHQIF 9 44 562.834756855873 NaN 0 562.834716796875 PEAK HCD FTMS 0 0 0 23939 14906.84375 1 0 0 5 Unmodified _IPRTLHQIF_ chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11;ENSG00000138160|ENST00000260731|KIF11 2.0597508629832335 0.2852655770354268 2 {I|L}Q 2 7 8.5835 0 0 0.76389 0 0 604.3492765800185 275.1406649225219 879.4899415025404 0 0 0 0 0 0 0 0 0 {I|L}Q 0.76389 - 9 + NaN NaN 117954.2 NaN 19431 4511 23939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23946 95.259 NaN 862140 35 0 60589 0.326 -1 0 102 538.3271714233399 1074.6397899134797 2 538.3272094726562 MULTI HCD FTMS 0 0 0 23945 601689.0625 0.844725664053818 1 -0.0228729248046875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.2189 0 0 909.5610525861345 0 909.5610525861345 0 -2.1349281074461874 -2.1349281074461874 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2189 - 164 + NaN NaN 217302.9 NaN 19432 4512 23945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23947 95.264 NaN 196400 35 0 14496 0.261 -1 0 52 472.283751677077 1413.8294256314311 3 472.2831726074219 MULTI HCD FTMS 0 0 0 23945 99798.6484375 0.22352084463691088 -9 0.21912384033203125 2 NaN NaN 2 K 1 -1 1.9897 0 0 0.14073 0 0 959.5509354964687 323.1710299127563 1282.721965409225 0 0 0 0 0 0 0 0 0 K 0.14073 - 7 + NaN NaN 126184.5 NaN 19433 4512 23945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23948 95.267 NaN 225930 35 0 23811 0.261 + 14089 KYWPLFVLF 9 36 606.844864806698 1211.6751766801958 2 607.3468017578125 MULTI HCD FTMS 0 0 0 23945 45872.4609375 0.1442467422064861 -4 0.0915069580078125 3 Unmodified _KYWPLFVLF_ ENSG00000104660|ENST00000321250|LEPROTL1;LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;nc|ENSG00000104660|O95214-2|LEPROTL1 29.84058131909904 0.11198220037953927 2 [YK]W[{I|L}P]{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 9 0 + 50.864 0 0 4.1978 4.1978 90.416 0 0 0 5.6424927368725974 36.25955625825256 5.6424927368725974 50.86365002801443 0 1.5 0 0 0 + + [YK]W[{I|L}P]{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 4.1978 + + 33 NaN NaN 142050.7 NaN 19434 4512 23945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23949 95.27 NaN 101940 35 0 15736 0.261 + 6134 FPEGLFYEF 9 46 574.7685982649667 1147.5226435967334 2 574.7694702148438 MULTI HCD FTMS 0 0 0 23945 34586.96484375 0.010583386509266669 75 -1.48187255859375 4 Unmodified _FPEGLFYEF_ ENSG00000072163|ENST00000355119|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 4 5 42.735 0 0 3.7241 0 0 543.2674990312985 0 543.2674990312985 0 41.76599703664159 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}YE{M(Oxidation (M))|F} 3.7241 + + 39 NaN NaN 121276 NaN 19435 4512 23945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23950 95.274 NaN 135000 35 0 42419 0.262 + -1 IKRRWLMDLLV 11 51 486.9590278463644 1457.8552541392933 3 486.9588928222656 MULTI HCD FTMS 0 0 0 23945 44513.58984375 0.5380867224289012 2 -0.04912567138671875 5 Oxidation (M) _IKRRWLM(Oxidation (M))DLLV_ REV__ENSG00000274736|ENST00000615050|CCL23 0.4545168274142398 0.41692731010159206 2 {M(Oxidation (M))|F} 1 -1 2.4743 0 0 0.16972 0 0 869.5224427152683 438.28388391666255 1307.806326631931 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.16972 + + 1 + NaN NaN 113685.2 NaN 19436 4512 23945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23951 95.277 NaN 183340 35 0 32097 0.261 + 31970 VYPGLAVFF 9 52 506.7787093309149 1011.5428657286299 2 506.7783508300781 MULTI HCD FTMS 0 0 0 23945 39570.58203125 0.7391852030870149 -5 0.1143951416015625 6 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 56.04830969593885 0.023109620888794903 2 AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 50.745 0 0 5.0166 0 0 529.289403443893 0 529.289403443893 0 36.04039720691517 0 0 0 1.8807196863200843 0 0 0 + AV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0166 + + 50 NaN NaN 124664.4 NaN 19437 4512 23945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23953 95.282 NaN 833380 35 0 67926 0.327 + 30555 VNFEFPEFQL 10 78 635.3111903128189 1268.6078276924377 2 635.3112182617188 MULTI HCD FTMS 0 0 0 23952 615450.3125 0.7610723794366496 2 -0.06238555908203125 1 Unmodified _VNFEFPEFQL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000484240.1_1_17:44798950-44799232:-|nuORF 96.0343551737317 0.0005392591298959663 2 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L} 10 4 + 85.52 0 0 6.7413 6.7413 86.077 0 0 0 2.0003638602245246 16.53212513775344 2.0003638602245246 2.0003638602245246 0 1.642159058960253 0 0.805462187404089 1.9720499982754136 {[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}VE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]NV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}DV{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}V]NE{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D{M(Oxidation (M))|F}VPE{M(Oxidation (M))|F}Q{I|L};{[NV]|[RG]}{M(Oxidation (M))|F}E{M(Oxidation (M))|F}PE{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}NVPE{M(Oxidation (M))|F}Q{I|L} 6.7413;6.5836;6.4724;6.3652;6.0892;6.0189;6.0188;5.9964;5.8612;5.8074 -;+;-;-;-;-;-;-;-;- + 3478 NaN NaN 221368.1 NaN 19438 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23954 95.286 NaN 443750 35 0 86492 0.261 + 22931 QYSSFFLYL 9 60 584.2898384316849 1166.5651239301696 2 584.2901000976562 MULTI HCD FTMS 0 0 0 23952 276545.1875 0.8966679960475238 2 -0.06238555908203125 2 Unmodified _QYSSFFLYL_ ENSG00000148110|ENST00000375344|MFSD14B;ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}{I|L}Y{I|L} 4 5 46.938 0 0 4.0236 0 0 612.25493056465 0 612.25493056465 0 21.876531584792502 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}{I|L}Y{I|L} 4.0236 + + 97 NaN NaN 165218.5 NaN 19439 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23955 95.29 NaN 431040 35 0 80596 0.261 -1 VHSIQQCDDSS 11 51 638.2666900786223 1274.5188272240446 2 638.2666015625 MULTI HCD FTMS 0 0 0 23952 174182.671875 0.741562743781041 -8 0.18962860107421875 3 Carbamidomethyl (C) _VHSIQQC(Carbamidomethyl (C))DDSS_ ENST00000400155.5_1_18:3534547-3567490:-|nuORF 2.498486711656943 0.4079631525365919 2 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3572233420724 0 939.3572233420724 0 22.078343878162343 0 0 0 0 0 0 0 VMS 1.8193 - 10 NaN NaN 163319.9 NaN 19440 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23956 95.293 NaN 142120 35 0 21285 0.262 + -1 PFTMMMFF 8 57 550.2189234501512 1098.4232939671024 2 550.218994140625 MULTI HCD FTMS 0 0 0 23952 48675.9375 0.7590556430285035 -1 0.0228729248046875 4 3 Oxidation (M) _PFTM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))FF_ REV__ENSG00000148842|ENST00000369878|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2;REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2 5.760428011301431 0.5334459684533844 2 A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 24.838 0 0 2.2612 0 0 715.2369058829212 0 715.2369058829212 0 20.233871898888154 0 0 0 0.8807196863200843 0 0 0 A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.2612 - 22 + NaN NaN 112115.7 NaN 19441 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23957 95.297 NaN 360560 35 0 29536 0.263 + -1 YKCWESKVF 9 55 416.2024124378302 NaN 0 416.1951904296875 PEAK HCD FTMS 0 0 0 23952 10947.8359375 0.695908056525648 -1 0.0228729248046875 5 Carbamidomethyl (C) _YKC(Carbamidomethyl (C))WESKVF_ REV__ENSG00000137462|ENST00000642700|TLR2 10.799506525563784 0.2429139407627568 2 V 1 -1 6.9897 0 0 0.84174 0 0 566.2432515340605 162.05585657291252 728.299108106973 0 0 0 0 0 0 0 0 0 V 0.84174 + + 3 + NaN NaN 151123.3 NaN 19442 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23958 95.3 NaN 100530 35 0 13137 0.261 -1 RCPYSCWL 8 40 542.7375665967033 1083.4605802602066 2 543.2401123046875 MULTI HCD FTMS 0 0 0 23952 7477.75927734375 0.2766212373828016 -4 0.091522216796875 6 Carbamidomethyl (C) _RCPYSC(Carbamidomethyl (C))WL_ ENSG00000143196|ENST00000367817|DPT 2.577480529830294 0.5381683276125971 2 T 1 -1 4.6041 0 0 0.42494 0 0 605.7514565803223 373.6265963190063 979.3780528993286 0 0 0 0 0 0 0 0 0 T 0.42494 - 2 + NaN NaN 117877.8 NaN 19443 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23959 95.303 NaN 106830 35 0 19809 0.261 + -1 GCCCCCCCA 9 42 577.1264624738752 NaN 0 577.1259155273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 5 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CCA_ REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 125563.3 NaN 19444 4513 23952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23961 95.308 NaN 944920 35 0 120920 0.327 + 12291 KLPALFFLF 9 75 548.3340034901569 1094.6534540471137 2 548.333740234375 MULTI HCD FTMS 0 0 0 23960 1022943.5625 0.6773451389693589 -2 0.04912567138671875 1 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 89.42679046578446 0.004540987215715461 2 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 69.816 0 0 6.3779 6.3779 90.845 0 0 0 2.260811173760189 51.3161404875364 2.260811173760189 12.781512503836439 0 3.0924778212679485 0 0 0.6549471895720984 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PA][K{I|L}]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[PA][K{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3779;5.2103;3.092;1.9244 +;-;-;- + 194 NaN NaN 255719.8 NaN 19445 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23962 95.313 NaN 1853900 35 0 550070 0.261 + 994 AYFNFPELL 9 78 557.284304073753 1112.554055214306 2 557.2844848632812 MULTI HCD FTMS 0 0 0 23960 643267.5 0.01058201106072608 -8 0.1830596923828125 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 126.56589448801843 0.0008132384440316759 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 106.29 0 0 9.5541 9.5541 97.184 0 0 0 21.762648498460507 77.40037746535522 21.762648498460507 25.445312593723983 0 2.555462187404089 1.5228787452803376 0.5451140161145328 1.6237125054200234 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[K{I|L}]{I|L}{[CA]|SS}A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}T{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[RK]A;[EP]{I|L}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{[CA]|SS}A 9.5541;7.267;6.3812;6.2614;4.8576;3.8676;3.0886;0.98596 +;-;-;-;-;-;-;- + 946 NaN NaN 388034.7 NaN 19446 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23963 95.316 NaN 566570 35 0 85494 0.261 + 29357 TYPPFVNFF 9 77 566.2790382693239 1130.5435236054477 2 566.2796020507812 MULTI HCD FTMS 0 0 0 23960 168567.078125 0.819082882893006 5 -0.1202392578125 3 Unmodified _TYPPFVNFF_ ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2 92.65332237495696 0.004456439685314431 2 [YT]PP{M(Oxidation (M))|F}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 97.755 0 0 8.6467 8.6467 95.279 0 0 0 78.54676526504008 16.47817481888636 16.47817481888636 15.955612550363782 0 2.894599018282542 1.5228787452803376 0 0.6747425010840047 + + [YT]PP{M(Oxidation (M))|F}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]PP{M(Oxidation (M))|F}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]P{M(Oxidation (M))|F}PVN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]P{M(Oxidation (M))|F}PVGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]PP{M(Oxidation (M))|F}V{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YT]P{M(Oxidation (M))|F}PV{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}N;[YT]P{[SA]|[TG]}[W{I|L}]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YT]P{[SA]|[TG]}[W{M(Oxidation (M))|F}]{I|L}{M(Oxidation (M))|F};[YT]PKK{M(Oxidation (M))|F}[NS]{M(Oxidation (M))|F};[YT]P{M(Oxidation (M))|F}KK[NS]{M(Oxidation (M))|F} 8.6467;7.2354;6.9662;6.1517;4.8716;4.8654;4.3222;3.199;3.062;2.8657 +;-;-;-;-;-;-;-;-;- + 1399 + NaN NaN 180267.9 NaN 19447 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23964 95.319 NaN 483560 35 0 108240 0.264 + 5915 FPDLFVADFCS 11 62 420.85852526012 1259.5537463805601 3 420.8583984375 MULTI HCD FTMS 0 0 0 23960 127515.9921875 0.5940919217198609 -6 0.14063262939453125 4 Unmodified _FPDLFVADFCS_ REV__ENSG00000244122|ENST00000373426|UGT1A7;REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 9.764250979337305 0.37200617284565546 2 DPE 3 -1 37.065 0 0 2.9427 0 0 900.4049557490341 0 900.4049557490341 0 18.838031200885155 0 0 0 0.7059771852360797 0 0.3807196863200844 0 DPE 2.9427 - 34 NaN NaN 158338.2 NaN 19448 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23965 95.323 NaN 149890 35 0 34223 0.261 + -1 WCSDWLIQ 8 43 554.2502565164807 1106.4859600997613 2 554.25 MULTI HCD FTMS 0 0 0 23960 112604.53125 0.8218597409279922 3 -0.0782470703125 5 Carbamidomethyl (C) _WC(Carbamidomethyl (C))SDWLIQ_ REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF 2.302733041254933 0.5385759549224092 2 Q{I|L} 2 -1 9.464 0 0 0.85532 0 0 130.9781260907452 731.3387420797015 862.3168681704467 0 0 0 0 0 0 0 0 0 Q{I|L} 0.85532 - 10 + NaN NaN 123854.8 NaN 19449 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23966 95.326 NaN 217740 35 0 68521 0.261 + 34660 YPSPFFVF 8 43 502.2493589862653 1002.4841650393306 2 502.2497253417969 MULTI HCD FTMS 0 0 0 23960 102441.3828125 0.4523453347721914 -5 0.11777496337890625 6 Unmodified _YPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 19.438996006549623 0.45076845602799126 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 5 41.198 0 0 4.1096 0 0 591.2687547383525 0 591.2687547383525 0 21.27636252551653 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.1096 + + 70 + NaN NaN 115636.3 NaN 19450 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23967 95.329 NaN 50694 35 0 3436.9 0.261 + 26271 SRARRRRRAW 10 42 457.60827744250093 1369.803002927703 3 457.6080627441406 MULTI HCD FTMS 0 0 0 23960 28517.625 0.07714681137181757 49 -0.9827194213867188 7 Unmodified _SRARRRRRAW_ REV__CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant;REV__ENSG00000105298|ENST00000429344|CACTIN;REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN 0.15932191953741626 0.4744603884079788 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 95723.9 NaN 19451 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23968 95.333 NaN 93593 35 0 10056 0.261 + 7157 FSFSFDGW 8 36 496.7122769885181 NaN 0 496.76812744140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _FSFSFDGW_ ENSG00000116147|ENST00000367674|TNR;nc|ENSG00000116147|Q92752-2|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant 14.581692164780916 0.38795613832665576 2 {M(Oxidation (M))|F} 1 7 5.4846 0 0 0.55321 0 0 610.2413000416383 231.07691370181877 841.318213743457 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.55321 + + 8 + NaN NaN 114003 NaN 19452 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23969 95.336 NaN 79935 35 0 7025.5 0.261 + -1 MILSYDRQY 9 37 602.78739378529 1203.5602346373798 2 602.31298828125 MULTI HCD FTMS 0 0 0 23960 9064.0146484375 0.013045200215758541 -9 0.21588134765625 9 Oxidation (M) _M(Oxidation (M))ILSYDRQY_ REV__ENSG00000172765|ENST00000393238|TMCC1;REV__nc|ENSG00000172765|O94876-2|TMCC1 7.289230182591677 0.29575926068275815 2 QE 2 -1 19.464 0 0 1.6172 0 0 928.45805556465 0 928.45805556465 0 -1.5051499783199063 -1.5051499783199063 0 0 0 0 0 0 QE 1.6172 - 18 NaN NaN 113108.8 NaN 19453 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23970 95.339 NaN 63398 35 0 6707.7 0.262 + 21110 PNSHTYPTT 9 46 509.2357007675055 1016.456848601811 2 509.2358703613281 MULTI HCD FTMS 0 0 0 23960 24096.45703125 1 0 0 10 Unmodified _PNSHTYPTT_ REV__ENSG00000172869|ENST00000539542|DMXL1;REV__ENST00000505312.5_1_5:118542414-118576152:+|nuORF;REV__ENST00000511622.5_1_5:118533586-118573027:+|nuORF;REV__nc|ENSG00000172869|Q9Y485|DMXL1 1.6526216038709556 0.33848895094777925 2 W 1 -1 6.9897 0 0 0.68765 0 0 100.04974102888737 727.3110938842582 827.3608349131456 0 0 0 0 0 0 0 0 0 W 0.68765 - 4 + NaN NaN 121882.1 NaN 19454 4514 23960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23972 95.344 NaN 1040800 35 0 111960 0.326 -1 0 91 622.8019025252823 1243.5892521173646 2 622.8016967773438 MULTI HCD FTMS 0 0 0 23971 492417.75 0.5446411801608273 -6 0.15390777587890625 1 NaN NaN 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PTQ{M(Oxidation (M))|F}V 9 -1 72.378 0 0 5.8201 0 0 0 162.05888995494584 162.05888995494584 42.16839635554727 0 0 0 0 2.305462187404089 1.5228787452803376 1.6179315557082392 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D{M(Oxidation (M))|F}PTQ{M(Oxidation (M))|F}V 5.8201 - 1569 NaN NaN 267215.3 NaN 19455 4515 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23973 95.349 NaN 660410 35 0 91526 0.261 -1 VMICLRVCVF 10 48 620.3242048927079 1238.6338568522158 2 620.323974609375 MULTI HCD FTMS 0 0 0 23971 430533.53125 0.5050847692507694 -6 0.15390777587890625 2 Carbamidomethyl (C) _VMICLRVC(Carbamidomethyl (C))VF_ ENST00000471841.5_1_3:179109981-179110074:+|nuORF 6.723162845929126 0.4397169348982109 2 VV[PG]TP{M(Oxidation (M))|F} 7 -1 26.598 0 0 2.1474 0 0 182.10619327917954 356.12485681705317 538.2310500962327 0 0 0 0 0 0 0 1.1861818737241734 0 VV[PG]TP{M(Oxidation (M))|F} 2.1474 - 35 + NaN NaN 203918 NaN 19456 4515 23971 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23975 95.354 NaN 6234800 35 0 875090 0.327 + 5868 FPDFPTPGVVF 11 88 611.8110145244015 1221.6074761156028 2 611.8114624023438 MULTI HCD FTMS 0 0 0 23974 4850225 0.8363852073600209 -5 0.1144256591796875 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 103.35351024395868 0.021349619833249373 2 {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 8 3 78.709 0 0 6.4431 0 0 359.147808503674 0 359.147808503674 0 60.99657168279766 0 0 0 2.9291746928241125 0 1.7302046884880937 0 + {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 6.4431 + + 329 NaN NaN 771870.5 NaN 19457 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23976 95.358 NaN 312840 35 0 43408 0.261 + 4448 EYGSIIAFF 9 52 523.7633692444928 1045.5121855557854 2 523.7633666992188 MULTI HCD FTMS 0 0 0 23974 185124.359375 0.8840962122077036 3 -0.07450103759765625 2 Unmodified _EYGSIIAFF_ ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214 74.39630413441286 0.00766564230304328 2 {I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 56.454 0 0 5.3996 0 0 436.1624673934792 0 436.1624673934792 0 45.65166884247503 0 0 0 2 0 0 0 + {I|L}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.3996 + + 94 + NaN NaN 143722.8 NaN 19458 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23977 95.362 NaN 777740 35 0 259310 0.261 -1 SCPDWRKDC 9 68 583.7399530572363 1165.4653531812726 2 583.7406005859375 MULTI HCD FTMS 0 0 0 23974 110480.7578125 0.04114933835796532 -8 0.186370849609375 3 Carbamidomethyl (C) _SCPDWRKDC(Carbamidomethyl (C))_ CD38|p.N182S|1|0.24|ENSG00000004468|chr4:15834262-15834262|A/G|missense_variant;ENSG00000004468|ENST00000226279|CD38 3.5964929083625545 0.32375295897743744 2 [Y{I|L}]{I|L} 3 -1 22.676 0 0 1.9457 0 0 0 773.2109784180724 773.2109784180724 5.201878979706343 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L} 1.9457 - 177 NaN NaN 213478.2 NaN 19459 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23978 95.365 NaN 196210 35 0 23281 0.261 + 13678 KYPENFFLL 9 49 585.8134552789435 NaN 0 585.8131103515625 PEAK HCD FTMS 0 0 0 23974 68306.1796875 0.773955287199477 16 -0.30693817138671875 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 8 12.206 0 0 1.0436 0 0 131.09554768626782 775.3423472070333 906.4378948933011 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.0436 - 7 + NaN NaN 110935.9 NaN 19460 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23979 95.368 NaN 136730 35 0 21233 0.261 + 28151 TITPIVLYF 9 49 533.8128315566657 1065.6111101801314 2 533.8126831054688 MULTI HCD FTMS 0 0 0 23974 42239.70703125 0.1726595812150928 -13 0.31398773193359375 5 Unmodified _TITPIVLYF_ ENSG00000172057|ENST00000304046|ORMDL3;nc|ENSG00000172057|Q8N138-4|ORMDL3 50.855029805455786 0.030374663808198754 2 [{I|L}T]T[{I|L}P]V{I|L}Y{M(Oxidation (M))|F} 9 0 + 47.33 0 0 4.4415 4.4415 90.65 0 0 0 30.90288749933073 7.324478088933262 7.324478088933262 47.32956253501804 0 1.9247425010840047 0 0 0 + + [{I|L}T]T[{I|L}P]V{I|L}Y{M(Oxidation (M))|F} 4.4415 + + 30 + NaN NaN 106970.4 NaN 19461 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23980 95.372 NaN 330210 35 0 42245 0.261 + 18744 NAAAIFDLF 9 56 491.2556566058878 980.4967602785756 2 491.25537109375 MULTI HCD FTMS 0 0 0 23974 99979.3984375 0.18217758173202306 -6 0.140655517578125 6 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 62.57269311338072 0.013982455292112035 2 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8 3 + 62.076 0 0 6.3311 6.3311 93.98 0 0 0 46.090255866264584 6.33085333508717 6.33085333508717 62.07625045844914 0 2.3494850021680094 0 0.4247425010840047 0 QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 6.3311 - 249 + NaN NaN 146722.9 NaN 19462 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23981 95.375 NaN 218690 35 0 13533 0.261 + -1 YTRITNMNE 9 56 579.2667682428036 1156.518983552407 2 579.2666625976562 MULTI HCD FTMS 0 0 0 23974 38628.87109375 0.07069331959031265 -5 0.1144256591796875 7 Oxidation (M) _YTRITNM(Oxidation (M))NE_ REV__ENSG00000133216|ENST00000374630|EPHB2;REV__nc|ENSG00000133216|P29323-3|EPHB2;REV__nc|ENSG00000133216|P29323|EPHB2 6.2057823575117 0.30397260197431997 2 [YT]N 3 -1 27.447 0 0 2.3733 0 0 0 775.3412569635374 775.3412569635374 5.651668842475033 0 0 0 0 0 2 0 0 [YT]N 2.3733 - 24 + NaN NaN 137308.7 NaN 19463 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23982 95.378 NaN 223250 35 0 17628 0.261 + 1206 AYLLGCVSHLE 11 57 602.8054779665237 NaN 0 602.788818359375 PEAK HCD FTMS 0 0 0 23974 8995.25390625 0.30792574993706856 -1 0.00960540771484375 8 Unmodified _AYLLGCVSHLE_ ENST00000494909.5_1_2:114398284-114398608:+|nuORF 13.042465956692817 0.3051224235824938 2 {I|L}{M(Oxidation (M))|F}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C(Carbamidomethyl (C)) 6 9 17.128 0 0 1.423 0 0 147.06998619453208 261.12436853580317 408.19435473033525 0 0 0 0 0 0.5 0 0.4247425010840047 0 {I|L}{M(Oxidation (M))|F}Q{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C(Carbamidomethyl (C)) 1.423 - 224 + NaN NaN 127864.2 NaN 19464 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23983 95.382 NaN 193670 35 0 27572 0.262 + 34685 YPTYPTHF 8 54 513.2408074722846 1024.467062011369 2 513.2410278320312 MULTI HCD FTMS 0 0 0 23974 39977.5078125 1 0 0 9 Unmodified _YPTYPTHF_ ENST00000334512.9_1_10:81072492-81072669:+|nuORF 26.34127834903884 0.3999841173197873 2 YPS 3 6 45.489 0 0 4.4403 0 0 0 674.2913302057249 674.2913302057249 26.293256987620524 0 0 0 0 0.5 1.154901959985743 0.4247425010840047 0 YPS 4.4403 - 48 + NaN NaN 116105.4 NaN 19465 4516 23974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23985 95.386 NaN 630740 35 0 160120 0.327 + 1100 AYILDTLVF 9 47 527.7947540371769 1053.5749551411536 2 527.7947387695312 MULTI HCD FTMS 0 0 0 23984 397959.53125 0.26938910316883385 6 -0.1260833740234375 1 Unmodified _AYILDTLVF_ ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000083312|Q92973-2|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1 104.79918948944588 0.003791450360204016 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F} 9 0 + 98.599 0 0 9.3585 9.3585 96.731 0 0 0 14.410452128757143 77.47933455448525 14.410452128757143 21.682437647924218 0 3.274227503252014 1.2218487496163564 0.805462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]T{M(Oxidation (M))|F}DT{I|L}V{M(Oxidation (M))|F};[{I|L}V]TD{M(Oxidation (M))|F}T{I|L}V{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[{M(Oxidation (M))|F}V]{I|L}{I|L}{[ES]|[DT]|[{I|L}C]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{I|L}[{M(Oxidation (M))|F}V]{I|L}{[ES]|[DT]|[{I|L}C]};[{I|L}V]T{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V]{I|L}{[ES]|[DT]|[{I|L}C]} 9.3585;7.3005;6.8974;2.8046;2.33;1.8131 +;-;-;-;-;- + 359 NaN NaN 187051.4 NaN 19466 4517 23984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23986 95.391 NaN 513230 35 0 63811 0.261 + 15051 LLSIEEMLI 9 71 530.8015651826227 1059.5885774320452 2 530.8015747070312 MULTI HCD FTMS 0 0 0 23984 114437.125 0.25621804829075345 10 -0.18967437744140625 2 Unmodified _LLSIEEMLI_ ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772-2|FPGT;nc|ENSG00000254685|O14772|FPGT 18.13498045792455 0.20367413111508956 2 {I|L}{I|L}{I|L} 3 6 36.198 0 0 3.4162 0 0 702.3258829344601 0 702.3258829344601 0 29.498555472855728 0 0 0 1 0 0 0 {I|L}{I|L}{I|L} 3.4162 - 120 NaN NaN 169603.8 NaN 19467 4517 23984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23988 95.396 NaN 2321500 35 0 222130 0.327 + 25545 SFLRCFCLF 9 104 568.2755833161406 1134.536613699081 2 568.2757568359375 MULTI HCD FTMS 0 0 0 23987 1098903.5 0.14826251164178791 -4 0.0877685546875 1 Unmodified _SFLRCFCLF_ REV__ENSG00000178950|ENST00000314167|GAK;REV__nc|ENSG00000178950|O14976-2|GAK 43.85829265575387 0.04763305254408404 2 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P 6 -1 72.07 0 0 6.3524 0 0 0 392.17972382723013 392.17972382723013 4.950593636514142 0 0 0 0 1.9005149978319906 2 0 0.3054621874040891 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P 6.3524 - 4751 + NaN NaN 442068.1 NaN 19468 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23989 95.4 NaN 450820 35 0 38548 0.261 -1 0 82 538.3271714233399 1074.6397899134797 2 538.327392578125 MULTI HCD FTMS 0 0 0 23987 266807.1875 0.3745769911436092 7 -0.1518402099609375 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.359 0 0 909.5609610334001 0 909.5609610334001 0 4.171043487920656 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.359 - 219 + NaN NaN 152017.2 NaN 19469 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23990 95.404 NaN 399780 35 0 48665 0.261 + 14090 KYWPLFVLF 9 48 606.844864806698 1211.6751766801958 2 606.8451538085938 MULTI HCD FTMS 0 0 0 23987 165128.25 0.3982040176668281 2 -0.0550994873046875 3 Unmodified _KYWPLFVLF_ ENSG00000104660|ENST00000321250|LEPROTL1;LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;nc|ENSG00000104660|O95214-2|LEPROTL1 19.361941925380144 0.1930734562688509 2 {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 4 5 40.433 0 0 3.337 0 0 687.3735218732437 0 687.3735218732437 0 28.72608801015147 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F} 3.337 + + 20 NaN NaN 147193 NaN 19470 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23991 95.407 NaN 626190 35 0 152030 0.261 -1 LIQDTCADLC 10 66 576.2580316730807 1150.5015104129614 2 576.2579345703125 MULTI HCD FTMS 0 0 0 23987 86534.2578125 0.09879440937981245 -4 0.0877685546875 4 Carbamidomethyl (C) _LIQDTC(Carbamidomethyl (C))ADLC_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 17.11289562659939 0.35104376501799556 2 AY 2 -1 33.928 0 0 2.949 0 0 0 913.3834816235096 913.3834816235096 4.503187623076954 0 0 0 0 0.5 1.6989700043360187 0 0 AY 2.949 - 53 + NaN NaN 183441.5 NaN 19471 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23992 95.41 NaN 205370 35 0 37931 0.262 + -1 VMGIGFVIL 9 44 482.7803716783154 963.5461904234309 2 482.7806396484375 MULTI HCD FTMS 0 0 0 23987 45554.42578125 0.3666026004351348 8 -0.1610565185546875 5 Oxidation (M) _VM(Oxidation (M))GIGFVIL_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-2|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 20.871210003555333 0.18003371494288972 2 V{I|L}{I|L} 3 -1 33.94 0 0 3.5224 0 0 620.2988945037176 0 620.2988945037176 0 25.84121882396211 0 0 0 0.9247425010840047 0 0 0 V{I|L}{I|L} 3.5224 + + 21 NaN NaN 127503.1 NaN 19472 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23993 95.414 NaN 125560 35 0 24708 0.261 -1 IYLTFPVAMF 10 34 609.3174773071619 1216.6204016811237 2 609.31787109375 MULTI HCD FTMS 0 0 0 23987 43274.28515625 0.029346613495748866 27 -0.5592193603515625 6 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 37.97399986684836 0.1629881689457739 2 T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 42.765 0 0 3.5151 0 0 389.2288990705094 0 389.2288990705094 0 42.765479208542914 0 0 0 1.3807196863200843 0 0.3252574989159953 0 T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.5151 + + 24 NaN NaN 124273.3 NaN 19473 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23994 95.417 NaN 161810 35 0 15470 0.263 + 2227 DKKIRRLMFPK 11 59 477.95930839893185 1430.8560957969955 3 477.9593505859375 MULTI HCD FTMS 0 0 0 23987 25845.779296875 0.29703575219789646 -1 0.009521484375 7 Unmodified _DKKIRRLMFPK_ REV__ENSG00000128908|ENST00000648947|INO80;REV__INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant 0.40826533853263924 0.41713015341995335 2 V[QP] 3 -1 8.5565 0 0 0.598 0 0 1088.6629022928923 0 1088.6629022928923 0 3.9524249272868435 0 0 0 0 0 0 0.5 V[QP] 0.598 - 25 + NaN NaN 118556 NaN 19474 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23995 95.42 NaN 254120 35 0 36458 0.261 + 34686 YPTYPTHF 8 63 513.2408074722846 1024.467062011369 2 513.291015625 MULTI HCD FTMS 0 0 0 23987 36673.35546875 0.9173497167645636 2 -0.0550994873046875 8 Unmodified _YPTYPTHF_ ENST00000334512.9_1_10:81072492-81072669:+|nuORF 26.34127834903884 0.3999841173197873 2 YPS 3 6 44.169 0 0 4.3114 0 0 0 674.2913302057249 674.2913302057249 22.416440611282624 0 0 0 0 0.5 1.2218487496163564 0.4247425010840047 0 YPS 4.3114 - 145 + NaN NaN 136216.4 NaN 19475 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23996 95.424 NaN 105560 35 0 8824.9 0.261 + 7667 FYKKEKERIL 10 61 451.93265726687656 NaN 0 451.9327087402344 PEAK HCD FTMS 0 0 0 23987 24185.982421875 0.17820354205217018 -6 0.13689422607421875 9 Unmodified _FYKKEKERIL_ REV__ENSG00000155754|ENST00000439140|C2CD6 1.9063754702782614 0.33855269584400594 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.77504 0 0 262.5250056176715 489.23090540103755 751.7559110187091 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.77504 + + 15 + NaN NaN 108501.3 NaN 19476 4518 23987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23998 95.428 NaN 895060 35 0 171530 0.327 + 9944 IDRKKEEKKLQ 11 79 472.283751677077 1413.8294256314311 3 472.28375244140625 MULTI HCD FTMS 0 0 0 23997 132524.421875 0.29681735350423505 -2 0.0419921875 1 Unmodified _IDRKKEEKKLQ_ ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2 1.0135738785822086 0.41447547578978133 2 [EP]{I|L} 3 9 26.483 0 0 1.8732 0 0 0 1071.627679375825 1071.627679375825 15.51415913489059 0 0 0 0 0 1.5228787452803376 0.2302046884880938 0 [EP]{I|L} 1.8732 - 43 NaN NaN 228077.3 NaN 19477 4519 23997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 23999 95.433 NaN 194600 35 0 11240 0.261 + 30556 VNFEFPEFQL 10 67 635.3111903128189 1268.6078276924377 2 635.3112182617188 MULTI HCD FTMS 0 0 0 23997 43298.9296875 0.053543915365752315 8 -0.14768218994140625 2 Unmodified _VNFEFPEFQL_ ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000484240.1_1_17:44798950-44799232:-|nuORF 15.738622578938676 0.3638982514236938 2 [EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L} 10 5 + 38.382 0 0 3.0255 3.0255 80.693 0 0 0 1.2763625255165323 14.758950235313854 1.2763625255165323 1.2763625255165323 0 0.8807196863200843 0 0.2742275032520141 0 [EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]P{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[QT]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}D[QT]{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}K{I|L};[{M(Oxidation (M))|F}E][WR]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}K{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[MN]V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}K{I|L};[EP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}[C(Carbamidomethyl (C))R][RD]{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]P{M(Oxidation (M))|F}V{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}[RV]TDDK{I|L} 3.0255;2.9249;2.5973;2.5973;2.396;2.3187;2.3031;2.2423;2.2025;1.9874 -;-;-;-;-;-;-;-;-;- 480 NaN NaN 124189.2 NaN 19478 4519 23997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24000 95.436 NaN 747880 35 0 52942 0.262 + 5113 FEPPHMHLA 9 94 539.7611413814907 NaN 0 539.7476806640625 PEAK HCD FTMS 0 0 0 23997 74063.609375 0.7940309533421669 -1 0.032470703125 3 Unmodified _FEPPHMHLA_ REV__ENST00000475490.1_2_6:151162220-151163082:+|nuORF 15.847184025352803 0.21527282152051216 2 TPSEW{M(Oxidation (M))|F}T 7 -1 34.773 0 0 3.2271 0 0 64.04344676364231 162.05588709049064 226.09933385413296 0 0 0 0 0 0 0 1.860924374808178 0 TPSEW{M(Oxidation (M))|F}T 3.2271 - 774 + NaN NaN 223902.5 NaN 19479 4519 23997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24001 95.44 NaN 383540 35 0 33959 0.261 + 20515 PDNAFLYIF 9 94 550.2766002652805 NaN 0 550.2612915039062 PEAK HCD FTMS 0 0 0 23997 38750.6875 0.4392496226372487 -3 0.07450103759765625 4 Unmodified _PDNAFLYIF_ REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1 11.640296217721598 0.23883959125015683 2 C{I|L}YS 4 -1 18.66 0 0 1.6986 0 0 62.11505472318601 567.2260874508046 629.3411421739906 0 0 0 0 0 0 0 0.4247425010840047 0 C{I|L}YS 1.6986 - 137 + NaN NaN 172309.6 NaN 19480 4519 23997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24002 95.443 NaN 308320 35 0 18318 0.261 + 2445 DPWEPCWPH 9 61 583.7399530572363 1165.4653531812726 2 586.3143310546875 MULTI HCD FTMS 0 0 0 23997 38502.12890625 0.19721764420862872 -3 0.07450103759765625 5 Unmodified _DPWEPCWPH_ ENSG00000154274|ENST00000381980|C4orf19 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 9 10.458 0 0 0.89729 0 0 774.2179299408414 0 774.2179299408414 0 4.9730248405664685 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L} 0.89729 - 22 + NaN NaN 143346.1 NaN 19481 4519 23997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24003 95.446 NaN 169120 35 0 25198 0.261 + 31971 VYPGLAVFF 9 45 506.7786865234375 NaN 0 506.7786865234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _VYPGLAVFF_ ENSG00000142188|ENST00000542230|TMEM50B;ENST00000442441.5_1_21:34823127-34828329:-|nuORF 45.7499826716795 0.05983490592224375 2 {M(Oxidation (M))|F}VA 3 8 33.06 0 0 3.2682 0 0 165.08060554990203 526.2658900638028 691.3464956137047 0 0 0 0 0 1.6861818737241734 0 0 0 {M(Oxidation (M))|F}VA 3.2682 - 17 + NaN NaN 124879.9 NaN 19482 4519 23997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24005 95.451 NaN 37769000 35 0 11780000 0.327 + 995 AYFNFPELL 9 73 557.284304073753 1112.554055214306 2 557.2848510742188 MULTI HCD FTMS 0 0 0 24004 29027686 0.47751719824067523 -2 0.0550994873046875 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 197.16714112316518 2.0801358606533006E-17 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 113.34 0 0 10.188 10.188 97.94 0 0 0 21.796058402355456 73.21964723176244 21.796058402355456 29.010234424404686 0 2.642159058960253 1.3979400086720375 0.6307196863200843 1.9802046884880937 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AY{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}A{M(Oxidation (M))|F}YPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{M(Oxidation (M))|F}APE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GGE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L} 10.188;7.5801;7.3989;7.2676;6.997;6.5538;6.4131;6.0048;5.153;4.6703 +;-;-;-;-;-;-;-;-;- + 1273 NaN NaN 790405.7 NaN 19483 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24006 95.455 NaN 2035600 35 0 182410 0.261 + 12292 KLPALFFLF 9 108 548.3340034901569 1094.6534540471137 2 548.333984375 MULTI HCD FTMS 0 0 0 24004 358248.6875 0.2372154397523548 4 -0.08739471435546875 2 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 89.42679046578446 0.004540987215715461 2 [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 72.885 0 0 6.6583 6.6583 92.219 0 0 0 5.23866405091114 5.23866405091114 5.23866405091114 17.228364094271328 0 2.7302046884880937 0 0 0 + + [K{I|L}]PA{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[K{I|L}]PA{I|L}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}[PA]K{I|L}{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[PA]K{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}{I|L}[PA]{I|L}K{M(Oxidation (M))|F};{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[PA]{I|L}K{M(Oxidation (M))|F} 6.6583;5.0844;2.7559;2.316;1.8633;1.4234 +;-;-;-;-;- + 2596 + NaN NaN 413936 NaN 19484 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24007 95.459 NaN 782800 35 0 80880 0.261 + 29667 VARRWRRRQGG 11 96 466.6081157643612 1396.8025178932835 3 466.6082458496094 MULTI HCD FTMS 0 0 0 24004 486526.65625 0.820964679782258 -4 0.09712982177734375 3 Unmodified _VARRWRRRQGG_ REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF 1.214830529360525 0.41359283248740725 2 QK[PG]N{[HG]|PP}N 8 -1 17.502 0 0 1.253 0 0 546.3246937482437 0 546.3246937482437 0 10.490130904408627 0 0 0 1.305462187404089 0 0 0 QK[PG]N{[HG]|PP}N 1.253 - 75 NaN NaN 211809.7 NaN 19485 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24008 95.462 NaN 692510 35 0 162760 0.261 -1 YSCQSKEIL 9 69 564.2737738439886 1126.532994754777 2 564.2741088867188 MULTI HCD FTMS 0 0 0 24004 269348.21875 0.38913147061986497 -2 0.0550994873046875 4 Carbamidomethyl (C) _YSC(Carbamidomethyl (C))QSKEIL_ ENSG00000174944|ENST00000309170|P2RY14 24.020572477871973 0.15282392193088168 2 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 7 -1 72.537 0 0 6.4389 0 0 248.07925612617345 0 248.07925612617345 0 47.27584469741785 0 0 0 2.4291746928241125 0 0.3252574989159953 0.8494850021680094 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 6.4389 - 268 NaN NaN 211585.3 NaN 19486 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24009 95.466 NaN 516180 35 0 94252 0.263 + 6849 FPTEEFCPPPP 11 56 420.85852526012 1259.5537463805601 3 421.1924133300781 MULTI HCD FTMS 0 0 0 24004 129831.3671875 0.7534505158862648 1 -0.0294036865234375 5 Unmodified _FPTEEFCPPPP_ ENSG00000203668|ENST00000366553|CHML 10.315234532428624 0.3672054350828177 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[WP]P[{M(Oxidation (M))|F}E]PE 10 8 + 40.691 0 0 3.2306 3.2306 83.273 0 0 0 2.191512336730028 22.94917177197476 2.191512336730028 7.269987279362624 0 0.5 1.3010299956639813 0.3807196863200844 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}D[WP]P[{M(Oxidation (M))|F}E]PE;{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}M[Y{M(Oxidation (M))|F}][KS]DPE 3.2306;2.6534 -;- 152 NaN NaN 195515.7 NaN 19487 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24010 95.469 NaN 431240 35 0 66086 0.261 -1 VHSIQQCDDSS 11 48 638.2666900786223 1274.5188272240446 2 638.2670288085938 MULTI HCD FTMS 0 0 0 24004 191185.5625 0.813950600095086 -1 0.0226287841796875 6 Carbamidomethyl (C) _VHSIQQC(Carbamidomethyl (C))DDSS_ ENST00000400155.5_1_18:3534547-3567490:-|nuORF 2.498486711656943 0.4079631525365919 2 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3543352034883 0 939.3543352034883 0 23.187587626244124 0 0 0 0 0 0 0 VMS 1.8193 - 9 NaN NaN 169613.9 NaN 19488 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24011 95.472 NaN 316380 35 0 50776 0.264 + -1 FYGGCGERGLC 11 63 425.8467572831287 1274.518442449586 3 426.1814270019531 MULTI HCD FTMS 0 0 0 24004 28977.697265625 0.34010745562638023 1 -0.0294036865234375 7 2 Carbamidomethyl (C) _FYGGC(Carbamidomethyl (C))GERGLC(Carbamidomethyl (C))_ REV__ENST00000554075.1_1_14:50052568-50053064:-|nuORF 3.072263186857199 0.40544676383124106 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.2149 0 0 1109.4394762404047 0 1109.4394762404047 0 9.252465359504816 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2149 + + 51 + NaN NaN 152582.8 NaN 19489 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24012 95.476 NaN 73774 35 0 10313 0.261 + 16308 LQWTADLFL 9 38 553.7970581054688 NaN 0 553.7970581054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LQWTADLFL_ REV__ENSG00000166912|ENST00000435680|MTMR10;REV__ENST00000565728.5_1_15:31239263-31253097:-|nuORF;REV__ENST00000566338.5_1_15:31233675-31240771:-|nuORF;REV__ENST00000567567.5_1_15:31233675-31258111:-|nuORF;REV__ENST00000568547.5_1_15:31233444-31253097:-|nuORF;REV__ENST00000568604.5_1_15:31235080-31253097:-|nuORF;REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10 2.0597508629832335 0.2852655770354268 2 Q{I|L}V 3 -1 16.198 0 0 1.4651 0 0 130.0726413068374 632.2719210260374 762.3445623328748 0 0 0 0 0 0 0 0 0 Q{I|L}V 1.4651 - 8 + NaN NaN 118825.5 NaN 19490 4520 24004 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24014 95.48 NaN 491720 35 0 93090 0.327 + 32833 WVESIFLI 8 60 503.7840737406737 1005.5535945481474 2 503.7841796875 MULTI HCD FTMS 0 0 0 24013 250350.3125 1 0 0 1 Unmodified _WVESIFLI_ ENSG00000081051|ENST00000395792|AFP 13.50788311687929 0.4944073034352369 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 5 33.5 0 0 3.3315 0 0 614.3085194318375 0 614.3085194318375 0 16.025684359364405 0 0 0 0.7302046884880937 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.3315 + + 32 NaN NaN 164375.4 NaN 19491 4521 24013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24015 95.485 NaN 393540 35 0 90426 0.261 + -1 SELQCGPELL 10 59 573.2792277062042 1144.5439024792083 2 573.7809448242188 MULTI HCD FTMS 0 0 0 24013 148789.859375 0.9488147924440771 -3 0.084503173828125 2 Carbamidomethyl (C) _SELQC(Carbamidomethyl (C))GPELL_ REV__ENSG00000023191|ENST00000354420|RNH1;REV__ENST00000525522.5_1_11:494693-499199:-|nuORF;REV__ENST00000525701.5_1_11:494693-500690:-|nuORF 34.40172386719151 0.19398797222092762 2 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 5 -1 33.754 0 0 2.9492 0 0 527.2006703107437 0 527.2006703107437 0 28.269921747127498 0 0 0 1.305462187404089 0 0.3252574989159953 0 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 2.9492 - 85 NaN NaN 167853.2 NaN 19492 4521 24013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24016 95.488 NaN 297620 35 0 37448 0.263 -1 FYIGCDRCQN 10 54 425.8467572831287 1274.518442449586 3 425.84686279296875 MULTI HCD FTMS 0 0 0 24013 60834.3203125 0.4723940605256799 -3 0.084503173828125 3 Carbamidomethyl (C) _FYIGCDRC(Carbamidomethyl (C))QN_ ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;nc|ENSG00000171634|Q12830|BPTF 1.9063754702782614 0.46521295622613185 2 {M(Oxidation (M))|F} 1 -1 18.411 0 0 1.4446 0 0 1109.4398271925531 0 1109.4398271925531 0 12.926740567922437 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 1.4446 + + 22 + NaN NaN 140272.9 NaN 19493 4521 24013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24018 95.493 NaN 5246400 35 0 738400 0.327 + 5869 FPDFPTPGVVF 11 69 611.8110145244015 1221.6074761156028 2 611.8110961914062 MULTI HCD FTMS 0 0 0 24017 4351412 0.750368617523699 1 -0.01938629150390625 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 85.64151623876279 0.004313738359844179 2 {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 8 3 56.419 0 0 4.6185 0 0 359.1476068090574 0 359.1476068090574 0 40.22160958700539 0 0 0 2.322682509756042 0 1.2302046884880937 0 + {M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 4.6185 + + 177 NaN NaN 611537.6 NaN 19494 4522 24017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24019 95.497 NaN 3769800 35 0 1380200 0.261 -1 0 77 583.7399530572363 1165.4653531812726 2 583.7401733398438 MULTI HCD FTMS 0 0 0 24017 2528321.25 0.9416911021777286 -2 0.04207611083984375 2 NaN NaN 2 {I|L}{I|L} 2 -1 19.949 0 0 1.7116 0 0 921.291609496386 0 921.291609496386 0 2.755762612236907 0 0 0 0.5 0 0 0 {I|L}{I|L} 1.7116 - 91 NaN NaN 674239.4 NaN 19495 4522 24017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24020 95.501 NaN 895730 35 0 90920 0.261 -1 0 88 622.8019025252823 1243.5892521173646 2 622.8019409179688 MULTI HCD FTMS 0 0 0 24017 707361.625 0.7823809564957408 1 -0.01938629150390625 3 NaN NaN 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPPTP{M(Oxidation (M))|F}DP 10 -1 77.885 0 0 6.2629 0 0 0 144.04701317635264 144.04701317635264 47.14410421304862 0 0 0 0 1.610924374808178 2 0.6861818737241735 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}TPPTP{M(Oxidation (M))|F}DP 6.2629 - 1307 NaN NaN 242859.4 NaN 19496 4522 24017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24021 95.504 NaN 632510 35 0 81285 0.261 + -1 APLRPSWCPR 10 68 620.3242048927079 1238.6338568522158 2 620.3243408203125 MULTI HCD FTMS 0 0 0 24017 577648.1875 0.6776738170531582 1 -0.01938629150390625 4 Carbamidomethyl (C) _APLRPSWC(Carbamidomethyl (C))PR_ REV__ENST00000358625.3_1_9:137023968-137024280:+|nuORF 5.731851221503515 0.44496410492002586 2 VV[PG]TP{M(Oxidation (M))|F} 7 -1 15.411 0 0 1.2442 0 0 182.1068879822331 356.12409387760005 538.2309818598332 0 0 0 0 0 0 0 0.6861818737241735 0 VV[PG]TP{M(Oxidation (M))|F} 1.2442 - 56 + NaN NaN 195258.5 NaN 19497 4522 24017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24022 95.508 NaN 265220 35 0 23033 0.264 -1 YKCNACGKVF 10 53 416.1958069150144 NaN 0 416.1959533691406 PEAK HCD FTMS 0 0 0 24017 63758.734375 0.3195772853655064 1 -0.01938629150390625 5 2 Carbamidomethyl (C) _YKC(Carbamidomethyl (C))NAC(Carbamidomethyl (C))GKVF_ ENSG00000167554|ENST00000403906|ZNF610;nc|ENSG00000167554|Q8N9Z0-2|ZNF610 3.876331618118854 0.3368666864104206 2 V 1 -1 6.9897 0 0 0.84175 0 0 566.2304066993663 162.05593286685783 728.2863395662241 0 0 0 0 0 0 0 0 0 V 0.84175 + + 4 + NaN NaN 127575.2 NaN 19498 4522 24017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24024 95.512 NaN 1040100 35 0 132500 0.327 + 7773 FYNPFQFEI 9 80 602.78739378529 1203.5602346373798 2 602.787353515625 MULTI HCD FTMS 0 0 0 24023 694816.0625 1 0 0 1 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 114.20165948288297 0.0022564706844261533 2 [Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L} 9 0 + 80.213 0 0 6.6647 6.6647 88.493 0 0 0 5.6424927368725974 60.52809901047091 5.6424927368725974 8.26606256887672 0 2.504432191740108 0 0 1.055462187404089 + + [Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}E;[{M(Oxidation (M))|F}T]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L};{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L}E 6.6647;5.9779;5.8996;5.6293;5.2128;4.9425;4.4433;4.2612;4.0268;3.8648 +;-;-;-;-;-;-;-;-;- + 1523 NaN NaN 264027.6 NaN 19499 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24025 95.517 NaN 1350100 35 0 226590 0.262 + 18745 NAAAIFDLF 9 82 491.2556566058878 980.4967602785756 2 491.2557373046875 MULTI HCD FTMS 0 0 0 24023 439073.5625 0.8000584227231367 1 -0.02593231201171875 2 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 126.56589448801843 0.0008132384440316759 2 {[QG]|[NA]}AA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 9 0 + 79.642 0 0 8.1226 8.1226 88.184 0 0 0 1.3110560414516215 13.988095514414155 1.3110560414516215 1.3110560414516215 0 2.772878745280338 0 0.25 1.3371804965004639 + + {[QG]|[NA]}AA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};QQA{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{[QG]|[NA]}AA[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};QQA[{M(Oxidation (M))|F}V]E{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQ[KS]{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PT{M(Oxidation (M))|F}NK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQ{M(Oxidation (M))|F}SK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]NK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[QP]SK;{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}PQAYK 8.1226;7.9889;4.5173;4.3836;3.3103;3.0743;2.9647;2.8381;2.6226;2.4224 +;-;-;-;-;-;-;-;-;- + 1977 NaN NaN 294823.3 NaN 19500 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24026 95.52 NaN 730700 35 0 52331 0.261 + -1 LLVMMDSAVM 10 86 579.2667682428036 1156.518983552407 2 579.266845703125 MULTI HCD FTMS 0 0 0 24023 342111.84375 0.6260866864877885 2 -0.0352783203125 3 3 Oxidation (M) _LLVM(Oxidation (M))M(Oxidation (M))DSAVM(Oxidation (M))_ REV__ENSG00000121064|ENST00000262288|SCPEP1;REV__ENST00000570589.5_1_17:55065091-55074421:+|nuORF;REV__ENST00000571345.5_1_17:55055520-55072276:+|nuORF;REV__ENST00000571898.5_1_17:55055520-55072831:+|nuORF;REV__nc|ENSG00000121064|Q9HB40-2|SCPEP1 14.838274106304384 0.3723198072575719 2 [YT]NH 4 -1 29.526 0 0 2.553 0 0 0 638.2784517877561 638.2784517877561 12.07834387816234 0 0 0 0 0.3494850021680094 1.6989700043360187 0 0 [YT]NH 2.553 - 474 + NaN NaN 200653 NaN 19501 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24027 95.524 NaN 419630 35 0 32707 0.261 + 17091 LYLEDFFVM 9 65 596.7839151415415 1191.5532773498828 2 596.7836303710938 MULTI HCD FTMS 0 0 0 24023 67349.7734375 0.33905017021785366 2 -0.0352783203125 4 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 81.61307344734483 0.005330412723537057 2 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 64.835 0 0 5.4412 5.4412 92.541 0 0 0 6.255697080001781 6.255697080001781 6.255697080001781 63.13731311087906 0 2.6307196863200843 0 0.4247425010840047 0 + + [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[Y{I|L}][{M(Oxidation (M))|F}E][YV]{I|L}V{M(Oxidation (M))|F} 5.4412;0.14245 +;- + 148 NaN NaN 165644.3 NaN 19502 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24028 95.527 NaN 275300 35 0 36837 0.261 + 7647 FYIPSTILL 9 62 533.8128315566657 1065.6111101801314 2 533.8136596679688 MULTI HCD FTMS 0 0 0 24023 79717.609375 0.3258547470505157 -7 0.15859222412109375 5 Unmodified _FYIPSTILL_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 44.40701690623563 0.04511410083598184 2 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 6 5 39.213 0 0 3.6799 0 0 310.13142592597814 0 310.13142592597814 0 -5.339322000954283 -5.339322000954283 0 0 1.3807196863200843 0 0 0 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 3.6799 - 56 NaN NaN 134348.5 NaN 19503 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24029 95.53 NaN 295750 35 0 22019 0.262 + 5510 FLCFTSCSSHF 11 82 426.8494706877508 NaN 0 426.8490295410156 PEAK HCD FTMS 0 0 0 24023 141352.078125 1 0 0 6 Unmodified _FLCFTSCSSHF_ ENST00000476848.5_1_21:43792873-43802453:-|nuORF 9.38312468134398 0.31550292094573573 2 S 1 10 4.6041 0 0 0.54059 0 0 645.5790703044095 116.05047784976796 761.6295481541774 0 0 0 0 0 0 0 0 0 + S 0.54059 + + 19 + NaN NaN 124353.7 NaN 19504 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24030 95.534 NaN 115450 35 0 29381 0.261 -1 LIRCFGKR 8 41 525.3062744140625 NaN 0 525.3062744140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _LIRC(Carbamidomethyl (C))FGKR_ ENST00000376566.8_1_X:48755234-48755303:+|nuORF 2.577480529830294 0.38822285293237185 2 Q 1 -1 11.99 0 0 1.1434 0 0 413.1981773528202 504.3306063287719 917.5287836815921 0 0 0 0 0 0.5 0 0 0 Q 1.1434 - 1 + NaN NaN 101273.1 NaN 19505 4523 24023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24032 95.538 NaN 7198600 35 0 763080 0.327 + 25546 SFLRCFCLF 9 122 568.2755833161406 1134.536613699081 2 568.2753295898438 MULTI HCD FTMS 0 0 0 24031 7013965 0.9463142736988215 2 -0.01856231689453125 1 Unmodified _SFLRCFCLF_ REV__ENSG00000178950|ENST00000314167|GAK;REV__nc|ENSG00000178950|O14976-2|GAK 52.268347100219714 0.028397529699942435 2 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE 7 -1 75.912 0 0 6.691 0 0 0 204.08603845767814 204.08603845767814 14.084646089564735 0 0 0 0 1.7302046884880937 2 0.28872548999643577 0.3054621874040891 AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}RE 6.691 - 9825 + NaN NaN 789897 NaN 19506 4524 24031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24033 95.543 NaN 325390 35 0 81437 0.264 + 6032 FPDSSTPFSLF 11 59 415.53263754312985 1243.5760832295896 3 415.5328369140625 MULTI HCD FTMS 0 0 0 24031 50540.4609375 0.40164641292305814 1 -0.00934600830078125 2 Unmodified _FPDSSTPFSLF_ ENST00000522067.1_1_1:233160928-233161282:-|nuORF 5.296884461304476 0.39569033063702824 2 DPE 3 9 26.198 0 0 2.1067 0 0 884.42817190894 0 884.42817190894 0 5.228787452803374 0 0 0 0 0 0 0 DPE 2.1067 - 15 NaN NaN 153466.9 NaN 19507 4524 24031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24035 95.548 NaN 1247000 35 0 305910 0.327 + 929 AYDPEDDTIL 10 85 576.2580316730807 1150.5015104129614 2 576.2589111328125 MULTI HCD FTMS 0 0 0 24034 449312.71875 0.5129712300985598 3 -0.03580474853515625 1 Unmodified _AYDPEDDTIL_ DIDO1|p.E1431D|1|0.34|ENSG00000101191|chr20:62881663-62881663|C/G|missense_variant 19.256988751693697 0.33098864134661865 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}N{M(Oxidation (M))|F}C{I|L} 9 7 + 51.608 0 0 4.4857 4.4857 81.896 0 0 0 0.7082530717588753 0.7082530717588753 0.7082530717588753 0.7082530717588753 0 0.805462187404089 2 0 0.3252574989159953 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}N{M(Oxidation (M))|F}C{I|L};AY{M(Oxidation (M))|F}N{M(Oxidation (M))|F}HHC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}HHN{M(Oxidation (M))|F}C{I|L};AY{M(Oxidation (M))|F}NHH{M(Oxidation (M))|F}C{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}HH{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}C{I|L};AY{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}HHC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}HHGG{M(Oxidation (M))|F}C{I|L};{M(Oxidation (M))|F}{M(Oxidation (M))|F}SN{M(Oxidation (M))|F}HHC{I|L};AY{M(Oxidation (M))|F}GGHH{M(Oxidation (M))|F}C{I|L};{M(Oxidation (M))|F}S{M(Oxidation (M))|F}N{M(Oxidation (M))|F}HHC{I|L} 4.4857;4.4241;3.7856;3.724;3.4026;3.341;2.7025;2.694;2.641;2.4745 -;-;-;-;-;-;-;-;-;- 544 NaN NaN 298008.2 NaN 19508 4525 24034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24036 95.552 NaN 527270 35 0 60936 0.261 + 21463 PYADHYSTF 9 96 550.7389751259142 1099.4633973186283 2 550.7385864257812 MULTI HCD FTMS 0 0 0 24034 216444.4375 0.8042759727757942 4 -0.06157684326171875 2 Unmodified _PYADHYSTF_ ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2 44.40701690623563 0.04511410083598184 2 SP{M(Oxidation (M))|F}[HC]SY{I|L} 8 7 62.758 0 0 5.708 0 0 0 162.05596338443596 162.05596338443596 4.1503780424059045 0 0 0 0 1.066901560044258 1.0457574905606752 0.3494850021680094 0 SP{M(Oxidation (M))|F}[HC]SY{I|L} 5.708 - 1333 + NaN NaN 172076.8 NaN 19509 4525 24034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24038 95.557 NaN 1530200 35 0 162210 0.327 + 26066 SPFEFGFTF 9 87 539.7477689998024 1077.4809850664046 2 539.7479248046875 MULTI HCD FTMS 0 0 0 24037 794368.375 0.7035236032753587 2 -0.02658843994140625 1 Unmodified _SPFEFGFTF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 223.60385607684137 4.939499843468879E-24 2 [PS]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 0 + 105.79 0 0 9.8187 9.8187 93.187 0 0 0 9.15205560610346 13.010299956639813 9.15205560610346 9.15205560610346 0 2.7376954943324545 1.3979400086720375 1.98239816956497 0 + + [PS]{M(Oxidation (M))|F}E{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SE{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ES{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]PS{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][DP]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SE{M(Oxidation (M))|F}G[NP]PS;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[DP]G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}ES{M(Oxidation (M))|F}G[NP]PS;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}WETT{M(Oxidation (M))|F};[PS][NP][PS]MTT{M(Oxidation (M))|F} 9.8187;8.9693;7.6773;6.8113;6.2361;6.1597;5.2606;4.8677;4.8621;4.7733 +;-;-;-;-;-;-;-;-;- + 2730 NaN NaN 325408.8 NaN 19510 4526 24037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24039 95.561 NaN 166830 35 0 16593 0.261 + 14194 LAPALKWVLML 11 57 627.8851299058102 1253.7557068784204 2 627.8859252929688 MULTI HCD FTMS 0 0 0 24037 87593.5234375 0.4626581271936807 4 -0.06835174560546875 2 Unmodified _LAPALKWVLML_ REV__ENSG00000184254|ENST00000329841|ALDH1A3 2.9952420565917617 0.40578455234410343 2 S 1 -1 6.9897 0 0 0.5575 0 0 645.4070005186342 518.2843111627561 1163.6913116813903 0 0 0 0 0 0 0 0.3494850021680094 0 S 0.5575 - 12 + NaN NaN 130044.7 NaN 19511 4526 24037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24040 95.565 NaN 87157 35 0 14194 0.262 + 10849 IVFGLLFDT 9 38 512.7895598035241 NaN 0 512.7897338867188 PEAK HCD FTMS 0 0 0 24037 41991.66796875 0.4710167743636112 1 -0.01909637451171875 3 Unmodified _IVFGLLFDT_ REV__nc|ENSG00000290584|Q9P1P4|TAAR3P 23.1484247019978 0.16626532474190622 2 EC{I|L}{I|L} 4 -1 38.047 0 0 3.7172 0 0 149.10455798419815 413.21869836978755 562.3232563539857 0 0 0 0 0 1.8494850021680094 0 0 0 EC{I|L}{I|L} 3.7172 - 13 + NaN NaN 119238.9 NaN 19512 4526 24037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24041 95.568 NaN 141590 35 0 16175 0.261 + -1 YLICAVLL 8 40 482.7802429199219 NaN 0 482.7802429199219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YLIC(Carbamidomethyl (C))AVLL_ REV__tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1 17.086550045450526 0.386433553673079 2 {I|L}S 2 -1 10.969 0 0 1.1396 0 0 130.10892594219735 629.3293776346412 759.4383035768385 0 0 0 0 0 0 0 0 0 {I|L}S 1.1396 - 12 + NaN NaN 116944.8 NaN 19513 4526 24037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24042 95.571 NaN 118590 35 0 6904.1 0.261 + 14608 LFRNRRSP 8 56 523.3037763728073 NaN 0 523.3038940429688 PEAK HCD FTMS 0 0 0 24037 67538.9140625 0.9980550294926198 -2 0.01856231689453125 5 Unmodified _LFRNRRSP_ REV__ENST00000594816.1_1_19:58941830-58942172:-|nuORF 2.577480529830294 0.38822285293237185 2 E 1 -1 5.4846 0 0 0.52504 0 0 358.1925614352645 554.3333753511757 912.5259367864403 0 0 0 0 0 0 0 0 0 E 0.52504 - 18 + NaN NaN 122878.8 NaN 19514 4526 24037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24044 95.576 NaN 313660 35 0 62188 0.411 -1 VYADIPFLLM 10 90 599.3149317879667 1196.6153106427332 2 599.3150634765625 MULTI HCD FTMS 0 0 0 24043 97119.0625 0.6960740858037672 -2 0.02831268310546875 1 Oxidation (M) _VYADIPFLLM(Oxidation (M))_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 24.020572477871973 0.2864316864133941 2 [Y{I|L}]{I|L}[DG]E{I|L}N 8 -1 45.411 0 0 3.795 0 0 0 276.12505120353325 276.12505120353325 18.730815340281453 0 0 0 0 0.5 1.6989700043360187 0.2742275032520141 0.3054621874040891 [Y{I|L}]{I|L}[DG]E{I|L}N 3.795 - 661 NaN NaN 196556.6 NaN 19515 4527 24043 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24046 95.583 NaN 27162000 35 0 8456800 0.327 + 996 AYFNFPELL 9 79 557.284304073753 1112.554055214306 2 557.2852783203125 MULTI HCD FTMS 0 0 0 24045 18985500 0.3123191689202625 6 -0.1329498291015625 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 181.3275282027936 9.859558525874733E-13 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 113.22 0 0 10.177 10.177 97.951 0 0 0 21.796058402355456 71.22770075195602 21.796058402355456 29.252509456924827 0 2.642159058960253 1.3979400086720375 0.5941876774005248 2.004432191740108 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AY{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}NE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}A{M(Oxidation (M))|F}YPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}AYPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}YAPE{I|L}{I|L} 10.177;7.5473;7.3167;7.2565;7.2044;6.8605;6.5428;6.2873;6.2271;6.1112 +;-;-;-;-;-;-;-;-;- + 1574 NaN NaN 715508.5 NaN 19516 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24047 95.588 NaN 636040 35 0 150410 0.261 -1 TMFTNQGTVI 10 60 564.2737738439886 1126.532994754777 2 564.2734985351562 MULTI HCD FTMS 0 0 0 24045 221671.125 0.32025164772028003 6 -0.1329498291015625 2 Oxidation (M) _TM(Oxidation (M))FTNQGTVI_ ENST00000418852.2_1_9:74722934-74723045:-|nuORF 20.41453444215458 0.3201613495159799 2 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 7 -1 68.893 0 0 6.1155 0 0 248.07954604316564 0 248.07954604316564 0 64.28920121266437 0 0 0 2.0669015600442577 0 0 1.1549471895720984 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 6.1155 - 161 NaN NaN 182700.3 NaN 19517 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24048 95.591 NaN 783240 35 0 70373 0.262 -1 0 91 466.6081157643612 1396.8025178932835 3 466.6080322265625 MULTI HCD FTMS 0 0 0 24045 558784.375 0.9428922949978739 4 -0.07726287841796875 3 NaN NaN 2 N{[HG]|PP}N 4 -1 15.534 0 0 1.1121 0 0 956.5419389209281 0 956.5419389209281 0 4.803272152714937 0 0 0 0.7742275032520141 0 0 0 N{[HG]|PP}N 1.1121 - 62 NaN NaN 204724 NaN 19518 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24049 95.595 NaN 1094000 35 0 70360 0.261 + 12293 KLPALFFLF 9 103 548.3340034901569 1094.6534540471137 2 548.3341674804688 MULTI HCD FTMS 0 0 0 24045 69743.1640625 0.046180644647320766 12 -0.28060150146484375 4 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 67.34385681178166 0.00994769994983633 2 [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 57.814 0 0 5.2815 5.2815 92.127 0 0 0 1.4215905896025305 1.4215905896025305 1.4215905896025305 57.052042582105386 0 2.6989700043360187 0 0 0.2742275032520141 + + [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[K{I|L}][PA]{I|L}{I|L}[QP]{[ES]|[DT]|[{I|L}C]} 5.2815;0.069617 +;- + 2076 NaN NaN 261923 NaN 19519 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24050 95.598 NaN 109560 35 0 10528 0.261 + -1 VMGIGFVIL 9 43 482.78033447265625 NaN 0 482.78033447265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _VM(Oxidation (M))GIGFVIL_ REV__ENSG00000138688|ENST00000679879|BLTP1;REV__nc|ENSG00000138688|Q2LD37-2|BLTP1;REV__nc|ENSG00000138688|Q2LD37-4|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37|BLTP1 20.871210003555333 0.18155047927120396 2 {I|L}S 2 -1 19.776 0 0 2.0524 0 0 131.09455563866658 629.3310421329986 760.4255977716653 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L}S 2.0524 - 18 + NaN NaN 124568 NaN 19520 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24051 95.601 NaN 108710 35 0 8115.7 0.261 + 20895 PKDFRARR 8 49 523.3037763728073 NaN 0 523.3038940429688 PEAK HCD FTMS 0 0 0 24045 67670.53125 1 0 0 6 Unmodified _PKDFRARR_ ENST00000487017.5_1_3:48603947-48604380:-|nuORF 4.75600775471527 0.38822285293237185 2 EH 2 8 4.6927 0 0 0.44924 0 0 558.3611405368271 217.10840784244377 775.4695483792708 0 0 0 0 0 0 0 0 0 EH 0.44924 - 9 + NaN NaN 115500.4 NaN 19521 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24052 95.605 NaN 119980 35 0 21019 0.261 + 34920 YSKSLLKHN 9 46 545.3053920527717 NaN 0 545.3057861328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YSKSLLKHN_ REV__ENSG00000151883|ENST00000281631|PARP8;REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF;REV__nc|ENSG00000151883|Q8N3A8-2|PARP8 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 6.9897 0 0 0.64208 0 0 665.3810344944121 307.1082704748391 972.4893049692512 0 0 0 0 0 0 0 0 0 {I|L} 0.64208 + + 8 + NaN NaN 110961.3 NaN 19522 4528 24045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24054 95.609 NaN 425530 35 0 66974 0.327 -1 VHSIQQCDDSS 11 48 638.2666900786223 1274.5188272240446 2 638.7688598632812 MULTI HCD FTMS 0 0 0 24053 91054.3671875 0.4676177857315209 8 -0.20578765869140625 1 Carbamidomethyl (C) _VHSIQQC(Carbamidomethyl (C))DDSS_ ENST00000400155.5_1_18:3534547-3567490:-|nuORF 2.498486711656943 0.4079631525365919 2 VMS 3 -1 23.188 0 0 1.8193 0 0 939.3561337347462 0 939.3561337347462 0 6.9897000433601875 0 0 0 0 0 0 0 VMS 1.8193 - 17 NaN NaN 179237.5 NaN 19523 4529 24053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24055 95.614 NaN 287140 35 0 56933 0.264 + 6850 FPTEEFCPPPP 11 62 420.85852526012 1259.5537463805601 3 420.8584899902344 MULTI HCD FTMS 0 0 0 24053 183619.1875 0.8554744710460552 9 -0.2252349853515625 2 Unmodified _FPTEEFCPPPP_ ENSG00000203668|ENST00000366553|CHML 7.0370850670814 0.388058401935362 2 DPE 3 9 35.005 0 0 2.7792 0 0 900.4063227845137 0 900.4063227845137 0 19.16386562212267 0 0 0 0.5 0 0.3807196863200844 0 DPE 2.7792 - 74 NaN NaN 130823.6 NaN 19524 4529 24053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24056 95.617 NaN 80462 35 0 8535.9 0.261 -1 0 30 554.4697265625 NaN 0 554.4697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 Q{I|L} 2 -1 10.969 0 0 0.99187 0 0 130.39931400957965 731.3416566947636 861.7409707043432 0 0 0 0 0 0 0 0 0 Q{I|L} 0.99187 - 5 + NaN NaN 95149.6 NaN 19525 4529 24053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24057 95.621 NaN 151880 35 0 23948 0.261 + 33506 YIDLAVLTF 9 62 527.7947540371769 1053.5749551411536 2 527.7951049804688 MULTI HCD FTMS 0 0 0 24053 40326.828125 0.02729827333979064 17 -0.3686676025390625 4 Unmodified _YIDLAVLTF_ ENST00000547020.1_1_12:53876285-53877059:-|nuORF 39.957323273324995 0.06554068735427583 2 DV{I|L}T{M(Oxidation (M))|F} 5 4 43.461 0 0 4.1251 0 0 460.2711964515036 0 460.2711964515036 0 36.38235311828623 0 0 0 1.3494850021680094 0 1.1549471895720984 0 DV{I|L}T{M(Oxidation (M))|F} 4.1251 - 119 + NaN NaN 121954.4 NaN 19526 4529 24053 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24059 95.625 NaN 4391400 35 0 599590 0.326 + 5870 FPDFPTPGVVF 11 76 611.8110145244015 1221.6074761156028 2 611.8109741210938 MULTI HCD FTMS 0 0 0 24058 3154838.75 0.5440284650930995 9 -0.21640777587890625 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 96.11092074494114 0.015204628282084255 2 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 11 2 + 63.677 0 0 5.2125 5.2125 92.084 0 0 0 4.357285695614372 45.96383821390276 4.357285695614372 59.12849824281099 0 2.5924778212679485 0 1.2302046884880937 0 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F};[DP][K{I|L}]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F} 5.2125;0.3723 -;- 312 NaN NaN 587313.9 NaN 19527 4530 24058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24060 95.63 NaN 1797600 35 0 672290 0.261 + -1 CQHNYNQML 9 59 583.7399530572363 1165.4653531812726 2 583.7401123046875 MULTI HCD FTMS 0 0 0 24058 528501 0.19684392922459187 6 -0.16017913818359375 2 Oxidation (M) _CQHNYNQM(Oxidation (M))L_ REV__nc|ENSG00000121964|Q4AE62-5|GTDC1 4.3292370932331545 0.3181982124262546 2 [Y{I|L}]{I|L} 3 -1 24.181 0 0 2.0748 0 0 0 773.2111860387232 773.2111860387232 9.232712163289278 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L} 2.0748 - 23 NaN NaN 383269.1 NaN 19528 4530 24058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24061 95.633 NaN 439330 35 0 85703 0.261 + 3957 EQIFPFIL 8 65 503.7840737406737 1005.5535945481474 2 503.7837219238281 MULTI HCD FTMS 0 0 0 24058 100112.28125 0.3998887808458398 9 -0.21640777587890625 3 Unmodified _EQIFPFIL_ REV__ENSG00000142583|ENST00000377424|SLC2A5 13.90604991867851 0.4914777452512057 2 V{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 34.781 0 0 3.4589 0 0 515.2316761701187 0 515.2316761701187 0 16.822581265925436 0 0 0 0.7614393726401688 0 0 0 V{M(Oxidation (M))|F}{I|L}{I|L} 3.4589 - 38 NaN NaN 158744.4 NaN 19529 4530 24058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24063 95.638 NaN 649580 35 0 88276 0.327 + 7774 FYNPFQFEI 9 66 602.78739378529 1203.5602346373798 2 602.7874145507812 MULTI HCD FTMS 0 0 0 24062 215501.0625 0.3101555564570731 8 -0.20369720458984375 1 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 107.1870275148908 0.00340162908551068 2 [Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L} 9 0 + 75.205 0 0 6.2485 6.2485 87.953 0 0 0 5.6424927368725974 59.26697410783382 5.6424927368725974 8.907854813243986 0 1.774227503252014 0 0 1.0629529932484498 + + [Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]NP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L}E;[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{I|L}E;[{M(Oxidation (M))|F}T]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}E{I|L};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}E{I|L};{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}Q{M(Oxidation (M))|F}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{[ET]|[MV]};[Y{M(Oxidation (M))|F}]GGP{M(Oxidation (M))|F}[AG]{M(Oxidation (M))|F}{I|L}E 6.2485;5.5084;5.4834;5.1931;4.7433;4.4529;4.2169;3.8388;3.7671;3.3386 +;-;-;-;-;-;-;-;-;- + 679 NaN NaN 203238.8 NaN 19530 4531 24062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24064 95.642 NaN 457070 35 0 54668 0.261 + -1 APLRPSWCPR 10 66 620.3242048927079 1238.6338568522158 2 620.323974609375 MULTI HCD FTMS 0 0 0 24062 362704.21875 0.4255101248484332 10 -0.23575592041015625 2 Carbamidomethyl (C) _APLRPSWC(Carbamidomethyl (C))PR_ REV__ENST00000358625.3_1_9:137023968-137024280:+|nuORF 9.38312468134398 0.42334543440173333 2 V[RD]YVC(Carbamidomethyl (C))[{M(Oxidation (M))|F}V] 8 -1 15.661 0 0 1.2643 0 0 182.10657348079377 0 182.10657348079377 0 11.056518697048718 0 0 0 0.3182503180159344 0 0.6307196863200843 0.3494850021680094 V[RD]YVC(Carbamidomethyl (C))[{M(Oxidation (M))|F}V] 1.2643 - 29 + NaN NaN 155408.6 NaN 19531 4531 24062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24065 95.646 NaN 787920 35 0 80397 0.261 -1 0 78 622.8019025252823 1243.5892521173646 2 622.8016357421875 MULTI HCD FTMS 0 0 0 24062 424040.9375 0.4690126556902216 10 -0.23575592041015625 3 NaN NaN 2 TP{M(Oxidation (M))|F}DPE 6 -1 74.87 0 0 6.0205 0 0 539.2611561505875 0 539.2611561505875 0 45.076833818782944 0 0 0 1.6861818737241734 0 1.3851518780601924 0 TP{M(Oxidation (M))|F}DPE 6.0205 - 1433 NaN NaN 212702.3 NaN 19532 4531 24062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24066 95.649 NaN 443480 35 0 73665 0.263 + 18746 NAAAIFDLF 9 70 491.2556566058878 980.4967602785756 2 491.25543212890625 MULTI HCD FTMS 0 0 0 24062 61878.28515625 0.11275159210461881 9 -0.22612762451171875 4 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 47.748688679222035 0.03472022231463587 2 {I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 5 4 55.662 0 0 5.6769 0 0 327.1523521748631 0 327.1523521748631 0 39.262137858390815 0 0 0 2.2302046884880937 0 0.3807196863200844 0 + {I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 5.6769 + + 422 + NaN NaN 178073.9 NaN 19533 4531 24062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24067 95.653 NaN 408950 35 0 43102 0.261 + 34538 YPIAVLIDEL 10 66 573.3261374368194 1144.6377219404387 2 573.3260498046875 MULTI HCD FTMS 0 0 0 24062 44844.94921875 0.1144835875213195 -8 0.12555694580078125 5 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 74.92900055777586 0.011744908545316337 2 D{I|L}{I|L}VA{I|L}E{I|L} 8 5 55.927 0 0 4.886 0 0 260.1361561505875 0 260.1361561505875 0 40.855479375649324 0 0 0 1.6989700043360187 0 1.0044321917401078 0 D{I|L}{I|L}VA{I|L}E{I|L} 4.886 - 326 NaN NaN 177259 NaN 19534 4531 24062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24068 95.656 NaN 70468 35 0 8428.2 0.262 + -1 HVRRKMIRIHP 11 45 486.95913629624 1457.85557948892 3 486.9591979980469 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _HVRRKM(Oxidation (M))IRIHP_ REV__ENSG00000187634|ENST00000616016|SAMD11;REV__nc|ENSG00000187634|Q96NU1-4|SAMD11;REV__nc|ENSG00000187634|Q96NU1-5|SAMD11;REV__nc|ENSG00000187634|Q96NU1-6|SAMD11;REV__nc|ENSG00000187634|Q96NU1|SAMD11 0.5059551277355931 0.4167017191902429 2 P 1 -1 0.9691 0 0 0.066474 0 0 990.5922565902857 367.19700037174067 1357.7892569620265 0 0 0 0 0 0 0 0 0 P 0.066474 + + 3 + NaN NaN 112281 NaN 19535 4531 24062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24070 95.661 NaN 395000 35 0 58171 0.327 -1 0 62 472.283751677077 1413.8294256314311 3 472.2833251953125 MULTI HCD FTMS 0 0 0 24069 119434.109375 0.26749874295818615 11 -0.25516510009765625 1 NaN NaN 2 [EP]{I|L} 3 -1 24.181 0 0 1.7103 0 0 0 1071.627465752778 1071.627465752778 13.212112250009653 0 0 0 0 0 1.5228787452803376 0 0 [EP]{I|L} 1.7103 - 42 NaN NaN 153725.3 NaN 19536 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24071 95.665 NaN 983770 35 0 88985 0.261 + 20678 PFLPASNLFF 10 84 576.8081479836088 NaN 0 576.8081665039062 PEAK HCD FTMS 0 0 0 24069 283418.78125 0.6227536386629894 -3 0.05149078369140625 2 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 82.5293158979368 0.008820460416981884 2 {M(Oxidation (M))|F}{I|L}NSAP{I|L} 7 7 49.192 0 0 4.2716 0 0 165.07987480476305 241.09798608951408 406.17786089427716 0 0 0 0 0 2.579689690656103 0 0 0.3252574989159953 {M(Oxidation (M))|F}{I|L}NSAP{I|L} 4.2716 - 239 + NaN NaN 232734.6 NaN 19537 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24072 95.669 NaN 230140 35 0 54915 0.263 + 29731 VDMASRFNFPL 11 46 432.8851910714669 NaN 0 432.8852233886719 PEAK HCD FTMS 0 0 0 24069 146071.484375 0.5774133829741593 9 -0.2129669189453125 3 Unmodified _VDMASRFNFPL_ tr|U7SU68|U7SU68_FUSNUCobalt-precorrin-2C(20)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01039PE=3SV=1 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118669.8 NaN 19538 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24073 95.672 NaN 232530 35 0 47226 0.261 + 7648 FYIPSTILL 9 36 533.8128315566657 1065.6111101801314 2 533.8135375976562 MULTI HCD FTMS 0 0 0 24069 172906.5625 0.7067751357390938 2 -0.05568695068359375 4 Unmodified _FYIPSTILL_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 57.47134341890925 0.0211188941628804 2 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 6 5 46.911 0 0 4.4023 0 0 310.13120443219685 0 310.13120443219685 0 19.744237387763093 0 0 0 1.8494850021680094 0 0 0 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 4.4023 - 44 NaN NaN 120052.4 NaN 19539 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24074 95.675 NaN 172130 35 0 11425 0.261 + -1 LLVMMDSAVM 10 56 579.2667682428036 1156.518983552407 2 579.2678833007812 MULTI HCD FTMS 0 0 0 24069 99704.6953125 0.18246600769862317 11 -0.25516510009765625 5 3 Oxidation (M) _LLVM(Oxidation (M))M(Oxidation (M))DSAVM(Oxidation (M))_ REV__ENSG00000121064|ENST00000262288|SCPEP1;REV__ENST00000570589.5_1_17:55065091-55074421:+|nuORF;REV__ENST00000571345.5_1_17:55055520-55072276:+|nuORF;REV__ENST00000571898.5_1_17:55055520-55072831:+|nuORF;REV__nc|ENSG00000121064|Q9HB40-2|SCPEP1 6.723162845929126 0.4397169348982109 2 [YT]N 3 -1 34.265 0 0 2.9628 0 0 0 775.3421606805493 775.3421606805493 27.275071725447404 0 0 0 0 0.3807196863200844 2 0 0 [YT]N 2.9628 - 21 + NaN NaN 118831.6 NaN 19540 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24075 95.679 NaN 297020 35 0 35150 0.261 + 22489 QRQRHVRLHQK 11 69 495.95899956410983 1484.8551692925296 3 495.958984375 MULTI HCD FTMS 0 0 0 24069 32487.322265625 0.32867751077589785 4 -0.1246795654296875 6 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.5059551277355931 0.4167017191902429 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 3 -1 27.324 0 0 1.8402 0 0 0 1100.663310732236 1100.663310732236 16.355129762210918 0 0 0 0 0 1.6989700043360187 0.28872548999643577 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F} 1.8402 - 56 NaN NaN 152837.7 NaN 19541 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24076 95.682 NaN 143190 35 0 10215 0.261 + 32768 WRNRQKNKRR 10 51 481.2836084473159 1440.8289959421477 3 481.28338623046875 MULTI HCD FTMS 0 0 0 24069 56389.92578125 0.37695489677167393 24 -0.5046463012695312 7 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 2 R 1 9 3.0989 0 0 0.21508 0 0 1158.661559273982 123.04263483218983 1281.7041941061718 0 0 0 0 0 0 0 0 0 + R 0.21508 + + 1 + NaN NaN 129989.5 NaN 19542 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24077 95.685 NaN 61663 35 0 4274.9 0.261 + 12487 KRAFRFVSPVF 11 39 451.93265726687656 NaN 0 451.9327697753906 PEAK HCD FTMS 0 0 0 24069 33944.34375 0.2501036419928689 6 -0.17374420166015625 8 Unmodified _KRAFRFVSPVF_ ENST00000307533.10_1_4:6676410-6676837:+|nuORF 1.3296431237094175 0.3383483288439026 2 Y 1 11 4.6041 0 0 0.51052 0 0 598.7290097468407 137.03498254947502 735.7639922963157 0 0 0 0 0 0 0 0 0 Y 0.51052 - 3 + NaN NaN 94992.8 NaN 19543 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24078 95.689 NaN 360020 35 0 20037 0.261 + 14421 LEMDHEPLI 9 81 548.770811040909 1095.527069148618 2 549.2725219726562 MULTI HCD FTMS 0 0 0 24069 29814.783203125 0.12357672597657804 9 -0.2129669189453125 9 Unmodified _LEMDHEPLI_ REV__ENSG00000156414|ENST00000409874|TDRD9 20.453626601364224 0.18364154288633264 2 AY 2 -1 28.443 0 0 2.5963 0 0 0 858.4052828424436 858.4052828424436 2.7764280577516587 0 0 0 0 0 1.3979400086720375 0 0 AY 2.5963 - 480 + NaN NaN 140420.5 NaN 19544 4532 24069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24080 95.694 NaN 1603900 35 0 133930 0.327 + 16372 LSEQLWSGCL 10 107 568.2755833161406 1134.536613699081 2 568.27587890625 MULTI HCD FTMS 0 0 0 24079 877567.4375 0.11840016199675198 11 -0.23863983154296875 1 Unmodified _LSEQLWSGCL_ REV__ENST00000332349.4_1_11:96123211-96123704:+|nuORF 38.175570920033316 0.1612389583597779 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}[DV]{M(Oxidation (M))|F}A 9 -1 67.831 0 0 5.9788 0 0 0 57.04598804894354 57.04598804894354 25.884315473529185 0 0 0 0 2.1747425010840047 2 0.7059771852360797 1.2218487496163564 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}[DV]{M(Oxidation (M))|F}A 5.9788 - 4947 NaN NaN 355252.1 NaN 19545 4533 24079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24081 95.698 NaN 410870 35 0 22603 0.261 + 26158 SPMDIFDMF 9 78 559.7298334656149 NaN 0 559.7294921875 PEAK HCD FTMS 0 0 0 24079 48194.03125 0.20850075689578226 -3 0.0682830810546875 2 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 61.357469665136826 0.022835916367010354 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[YQ]S 6 6 36.956 0 0 3.3071 0 0 165.08355418947195 162.05573450260002 327.139288692072 0 0 0 0 0 1.25 0 1.2059771852360797 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}[YQ]S 3.3071 - 448 + NaN NaN 155720.2 NaN 19546 4533 24079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24082 95.702 NaN 151440 35 0 26338 0.261 -1 PYCTNSPIF 9 54 549.7491377549836 1097.4837225767671 2 550.260986328125 MULTI HCD FTMS 0 0 0 24079 10774.6796875 0.061989878521037184 10 -0.222381591796875 3 Carbamidomethyl (C) _PYC(Carbamidomethyl (C))TNSPIF_ ENSG00000102935|ENST00000563137|ZNF423;nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423 12.531546534597751 0.2520865569484384 2 SY{I|L}{M(Oxidation (M))|F} 4 -1 31.938 0 0 2.9101 0 0 569.224824726961 0 569.224824726961 0 8.240312677277188 0 0 0 0 0 0 0 SY{I|L}{M(Oxidation (M))|F} 2.9101 - 115 + NaN NaN 119505.8 NaN 19547 4533 24079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24083 95.705 NaN 220280 35 0 18777 0.261 + 14806 LIPEEFFQF 9 64 585.2975350802387 1168.5805172272774 2 585.8131713867188 MULTI HCD FTMS 0 0 0 24079 12459.908203125 0.23418562160641407 -9 0.1551971435546875 4 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 26.268140514670165 0.13340543277302316 2 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 34.667 0 0 2.9666 0 0 728.3742347209126 0 728.3742347209126 0 26.70818753952375 0 0 0 1.1747425010840047 0 0 0.2742275032520141 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.9666 + + 66 + NaN NaN 115615.5 NaN 19548 4533 24079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24084 95.708 NaN 233740 35 0 17075 0.261 + 17092 LYLEDFFVM 9 62 596.7839151415415 1191.5532773498828 2 596.7844848632812 MULTI HCD FTMS 0 0 0 24079 73979.421875 0.37242494368022955 12 -0.26152801513671875 5 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 54.773552608820026 0.024892918755467567 2 [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 55.318 0 0 4.6425 4.6425 91.116 0 0 0 7.21394354078236 45.58599670242878 7.21394354078236 55.31797177830911 0 2.1549471895720984 0 0 0 + + [Y{I|L}]{I|L}ED{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 4.6425 + + 92 NaN NaN 142717.5 NaN 19549 4533 24079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24085 95.712 NaN 199040 35 0 24584 0.262 + 29482 TYVGIGWLI 9 57 511.2893320207382 1020.5641111082764 2 511.29010009765625 MULTI HCD FTMS 0 0 0 24079 66368.6015625 0.833228891780144 -2 0.055572509765625 6 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 26.88365393820708 0.12808753336095696 2 YGW{I|L}{I|L} 5 4 36.414 0 0 3.5681 0 0 370.2202625959 0 370.2202625959 0 31.453650195120844 0 0 0 0.9247425010840047 0 0 0 YGW{I|L}{I|L} 3.5681 - 48 NaN NaN 127736.2 NaN 19550 4533 24079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24087 95.717 NaN 7165200 35 0 2141200 0.327 + 997 AYFNFPELL 9 86 557.284304073753 1112.554055214306 2 557.2852172851562 MULTI HCD FTMS 0 0 0 24086 3127367 0.051446454523117885 12 -0.2614898681640625 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 181.3275282027936 9.859558525874733E-13 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 108.85 0 0 9.7837 9.7837 97.6 0 0 0 21.628691428278927 66.80019415929313 21.628691428278927 28.37205316164642 0 2.610924374808178 1.3979400086720375 0.5774509799928715 1.916386562212267 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}AY{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}YAPE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{M(Oxidation (M))|F}APE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[K{I|L}]{[CA]|SS}A{I|L} 9.7837;7.2336;6.952;6.8397;6.7937;6.6655;5.6358;5.5235;4.8393;3.9408 +;-;-;-;-;-;-;-;-;- + 2483 NaN NaN 852073.5 NaN 19551 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24088 95.721 NaN 167860 35 0 18917 0.261 + 20590 PEKPRPALL 9 47 510.8130765752968 NaN 0 510.8130798339844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PEKPRPALL_ ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1 4.3292370932331545 0.2742679634796037 2 {I|L}WGY 4 9 9.6412 0 0 0.94558 0 0 130.14078830508737 367.19696985416255 497.3377581592499 0 0 0 0 0 0 0 0 0 {I|L}WGY 0.94558 - 29 + NaN NaN 115858.1 NaN 19552 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24089 95.725 NaN 159300 35 0 57088 0.262 + 29592 VAFGMGFD 8 29 422.18878024523815 842.3630075572763 2 422.1888732910156 MULTI HCD FTMS 0 0 0 24086 89534.328125 0.21921123394084255 1 -0.03948211669921875 3 Unmodified _VAFGMGFD_ REV__ENST00000396987.7_1_8:41456432-41456600:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 11.237 0 0 1.334 0 0 155.09556259631717 571.1597384088499 726.255301005167 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.334 - 2 + NaN NaN 114510.8 NaN 19553 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24090 95.728 NaN 136560 35 0 11240 0.261 -1 0 59 426.17911872708754 425.17184226048755 1 427.18084716796875 MULTI HCD FTMS 0 0 0 24086 5349.81005859375 0.6086909879113038 -1 0.0229034423828125 4 NaN NaN 2 EM{M(Oxidation (M))|F} 3 -1 + 27.167 0 0 6.3896 6.3896 92.681 0 0 0 27.1669877129645 13.723637474483468 13.723637474483468 27.1669877129645 0 0 0 0 0 EM{M(Oxidation (M))|F} 6.3896 - 11 + NaN NaN 115432.4 NaN 19554 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24091 95.731 NaN 142290 35 0 16601 0.261 -1 VLVSDMILI 9 47 530.8012820088616 NaN 0 530.81103515625 PEAK HCD FTMS 0 0 0 24086 9673.0712890625 0.11222623651808862 8 -0.1832427978515625 5 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))VLVSDM(Oxidation (M))ILI_ ENST00000489450.1_1_1:76254988-76255843:+|nuORF 16.942295170755138 0.2079222001251384 2 {I|L}{I|L}V 3 -1 21.555 0 0 2.0342 0 0 131.09494127172167 600.2316988580686 731.3266401297903 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}V 2.0342 - 22 + NaN NaN 112907.2 NaN 19555 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24092 95.735 NaN 467570 35 0 33647 0.261 + 26067 SPFEFGFTF 9 77 539.7477689998024 1077.4809850664046 2 539.7479248046875 MULTI HCD FTMS 0 0 0 24086 135649.515625 0.12013649966246084 10 -0.21573638916015625 6 Unmodified _SPFEFGFTF_ ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6 71.13359017698441 0.008721403657255008 2 [{M(Oxidation (M))|F}T][DP]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 9 4 + 54.543 0 0 5.0621 5.0621 88.469 0 0 0 3.9697716852543863 25.669015600442574 3.9697716852543863 11.989700043360187 0 1.8807196863200843 0 0.6861818737241735 0 [{M(Oxidation (M))|F}T][DP]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[DP]G{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}[DP]T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}[WE]TT{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G[DP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[DG]{I|L}K[DP]WT{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]AA{M(Oxidation (M))|F}[DP]T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]AA[DP]{M(Oxidation (M))|F}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}G{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]PS;[DG]{I|L}QG{M(Oxidation (M))|F}[DP]{[ET]|[MV]} 5.0621;3.9493;3.5225;3.48;3.3166;2.4334;2.431;2.2251;1.6782;1.0739 -;-;-;-;-;-;-;-;-;- 668 NaN NaN 174782.9 NaN 19556 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24093 95.738 NaN 99690 35 0 16035 0.261 -1 RPFMTIRLRLL 11 39 477.9591000702725 1430.8554708110175 3 477.7286682128906 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _RPFM(Oxidation (M))TIRLRLL_ ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT 0.09484139111097674 0.41850472438158626 2 S 1 -1 5.4846 0 0 0.38331 0 0 885.6993561643363 455.09891147039315 1340.7982676347294 0 0 0 0 0 0 0 0 0 S 0.38331 - 12 + NaN NaN 109817.9 NaN 19557 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24094 95.741 NaN 54387 35 0 7981.9 0.261 + 30987 VSCSGSHH 8 29 407.1680821173939 NaN 0 407.183349609375 PEAK HCD FTMS 0 0 0 24086 18404.05078125 0.9081392745563498 -1 0.0229034423828125 8 Unmodified _VSCSGSHH_ ENSG00000069122|ENST00000283296|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;nc|ENSG00000069122|Q8IZF2-3|ADGRF5 0.7936320650641473 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 7 5.4846 0 0 0.67517 0 0 352.1477049068597 297.1104830377563 649.258187944616 0 0 0 0 0 0 0 0 0 + C(Carbamidomethyl (C)) 0.67517 + + 1 + NaN NaN 94128 NaN 19558 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24095 95.745 NaN 275760 35 0 80270 0.261 -1 VYADIPFLLM 10 42 599.3149317879667 1196.6153106427332 2 599.3153686523438 MULTI HCD FTMS 0 0 0 24086 62833.3828125 0.4503409358916441 5 -0.12522125244140625 9 Oxidation (M) _VYADIPFLLM(Oxidation (M))_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 14.838274106304384 0.3723198072575719 2 WD{I|L}D{I|L}{M(Oxidation (M))|F} 6 -1 22.809 0 0 1.9061 0 0 389.2610196144728 0 389.2610196144728 0 -2.5970469684341424 -2.5970469684341424 0 0 0.6861818737241735 0 0.3807196863200844 0 WD{I|L}D{I|L}{M(Oxidation (M))|F} 1.9061 - 82 + NaN NaN 130625.2 NaN 19559 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24096 95.748 NaN 176150 35 0 25829 0.261 + -1 TGRRWGMTF 9 43 564.2737738439886 1126.532994754777 2 564.2739868164062 MULTI HCD FTMS 0 0 0 24086 33926.54296875 0.04901419292745083 12 -0.2614898681640625 10 Oxidation (M) _TGRRWGM(Oxidation (M))TF_ REV__ENST00000355155.5_2_8:100025513-100050691:+|nuORF 3.2813086475875832 0.32614229037259 2 {I|L}{I|L} 2 -1 20.969 0 0 1.8614 0 0 882.3528919904312 0 882.3528919904312 0 10.484550065040281 0 0 0 0 0 0 0 {I|L}{I|L} 1.8614 - 2 NaN NaN 118812.1 NaN 19560 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24097 95.751 NaN 48052 35 0 9746 0.261 + 22486 QRPAVSRSLKL 11 28 627.8851299058102 1253.7557068784204 2 627.8843994140625 MULTI HCD FTMS 0 0 0 24086 39345.40234375 0.20781753544860912 12 -0.2614898681640625 11 Unmodified _QRPAVSRSLKL_ ENST00000605573.1_1_3:187871604-187871808:-|nuORF 1.1933415558491238 0.4136870758253112 2 P 1 10 3.4949 0 0 0.27875 0 0 519.4169140090829 634.2719820611936 1153.6888960702765 0 0 0 0 0 0 0 0 0 + P 0.27875 + + 3 + NaN NaN 114543.5 NaN 19561 4534 24086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24099 95.756 NaN 131210 35 0 15220 0.327 + 23391 RLAESFLPI 9 43 523.3037763728073 NaN 0 523.3038330078125 PEAK HCD FTMS 0 0 0 24098 18447.126953125 0.27260207083308513 7 -0.14376068115234375 1 Unmodified _RLAESFLPI_ REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__nc|ENSG00000157106|Q96Q15-3|SMG1;REV__nc|ENSG00000157106|Q96Q15-4|SMG1;REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;REV__SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 4.75600775471527 0.27219989241163056 2 {I|L} 1 -1 5.4846 0 0 0.52504 0 0 590.2806656833114 338.20810877017817 928.4887744534897 0 0 0 0 0 0 0 0 0 {I|L} 0.52504 + + 6 + NaN NaN 102301.6 NaN 19562 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24100 95.761 NaN 114170 35 0 21579 0.261 + 11429 IYPVLQALDF 10 38 589.8265028438567 1177.6384527545133 2 589.8272705078125 MULTI HCD FTMS 0 0 0 24098 46966.58984375 0.40298252287912484 8 -0.15999603271484375 2 Unmodified _IYPVLQALDF_ ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 15.248480904072842 0.3684828712757339 2 D{M(Oxidation (M))|F} 2 8 22.959 0 0 1.9496 0 0 897.5291615216812 0 897.5291615216812 0 17.47425010840047 0 0 0 0.5 0 0 0 + D{M(Oxidation (M))|F} 1.9496 + + 5 NaN NaN 106376.8 NaN 19563 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24101 95.764 NaN 62284 35 0 19683 0.263 + 2487 DRYWVFKDNN 10 28 452.8806854340555 NaN 0 452.8807678222656 PEAK HCD FTMS 0 0 0 24098 17637.263671875 0.5367666674275084 1 -0.029510498046875 3 Unmodified _DRYWVFKDNN_ ENSG00000198598|ENST00000360564|MMP17;nc|ENSG00000198598|Q9ULZ9-2|MMP17 0.6268255596534771 0.33964781322640114 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109774.7 NaN 19564 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24102 95.767 NaN 204560 35 0 17140 0.261 + 12294 KLPALFFLF 9 54 548.3340034901569 1094.6534540471137 2 548.3340454101562 MULTI HCD FTMS 0 0 0 24098 71025.21875 0.04702956099256733 19 -0.377197265625 4 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 48.345845343767074 0.03388484103555672 2 [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 9 0 + 55.34 0 0 5.0555 5.0555 91.744 0 0 0 3.529543537615183 51.36046240493748 3.529543537615183 55.339862491657854 0 2.4247425010840047 0 0 0 + + [K{I|L}][PA]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.0555 + + 83 NaN NaN 140648.6 NaN 19565 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24103 95.771 NaN 206980 35 0 20113 0.261 + 29313 TYNIFAITF 9 56 545.2843302665717 1088.5541075999433 2 544.8046875 MULTI HCD FTMS 0 0 0 24098 75034.6484375 0.07128110993050214 -7 0.17243194580078125 5 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 72.96794272382148 0.008127836904478181 2 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 2 + 76.207 0 0 7.0007 7.0007 86.977 0 0 0 8.906877742051762 68.13486257521106 8.906877742051762 3.027646714607357 0 2.4247425010840047 0 1.1307196863200843 0.6549471895720984 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[QS]|[NT]}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}T{M(Oxidation (M))|F} 7.0007;6.7226;5.8993;5.0744 -;-;-;- 316 NaN NaN 132408.7 NaN 19566 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24104 95.774 NaN 403390 35 0 74180 0.261 -1 VATVFTLCF 9 50 529.2713756289232 NaN 0 529.2706298828125 PEAK HCD FTMS 0 0 0 24098 23678.244140625 0.5219754556692082 4 -0.0857391357421875 6 Carbamidomethyl (C) _VATVFTLC(Carbamidomethyl (C))F_ ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3 16.942295170755138 0.2079222001251384 2 V[PG]TP{M(Oxidation (M))|F} 6 -1 32.114 0 0 3.0396 0 0 99.0698966817783 356.1246959879212 455.1945926696995 0 0 0 0 0 1.774227503252014 0 0.8252574989159953 0 V[PG]TP{M(Oxidation (M))|F} 3.0396 - 58 + NaN NaN 167821.6 NaN 19567 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24105 95.777 NaN 141630 35 0 15314 0.261 + 12682 KWKQQKKEEKK 11 38 496.6279112707849 NaN 0 496.62762451171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _KWKQQKKEEKK_ ENSG00000198917|ENST00000361256|SPOUT1 0.09484139111097674 0.34185110575506755 2 {M(Oxidation (M))|F} 1 11 5.4846 0 0 0.5533 0 0 610.073039483173 231.07749353580314 841.1505330189761 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.5533 - 7 + NaN NaN 112695.8 NaN 19568 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24106 95.781 NaN 95442 35 0 19189 0.261 + -1 YVEMSVLLL 9 41 541.7929988258417 1081.5714447184832 2 542.2982788085938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Oxidation (M) _YVEM(Oxidation (M))SVLLL_ REV__ENST00000303221.9_1_5:49694656-49694779:-|nuORF 11.640296217721598 0.25978676193971967 2 {I|L}{I|L}{I|L} 3 -1 28.94 0 0 2.6758 0 0 724.3036366193375 0 724.3036366193375 0 18.48258770979733 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}{I|L} 2.6758 + + 21 NaN NaN 116731.7 NaN 19569 4535 24098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24108 95.786 NaN 2524300 35 0 335610 0.327 + 5871 FPDFPTPGVVF 11 65 611.8110145244015 1221.6074761156028 2 611.81103515625 MULTI HCD FTMS 0 0 0 24107 1474752.625 0.25431011552358085 15 -0.28150177001953125 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 96.11092074494114 0.015204628282084255 2 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F} 11 2 + 63.503 0 0 5.1983 5.1983 91.973 0 0 0 5.862435673934293 47.305107169212505 5.862435673934293 55.944644764275026 0 2.575122469078331 0 1.2302046884880937 0 [DP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}PTPGVV{M(Oxidation (M))|F};[DP][K{I|L}]P{M(Oxidation (M))|F}{M(Oxidation (M))|F}[DP]{M(Oxidation (M))|F} 5.1983;0.61872 -;- 290 NaN NaN 478704.5 NaN 19570 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24109 95.79 NaN 419080 35 0 45506 0.261 -1 0 63 622.8019025252823 1243.5892521173646 2 622.8019409179688 MULTI HCD FTMS 0 0 0 24107 183803.515625 0.20329682199252375 15 -0.28150177001953125 2 NaN NaN 2 TP{M(Oxidation (M))|F}DPE 6 -1 64.245 0 0 5.1661 0 0 539.2635287945844 0 539.2635287945844 0 35.779550148593486 0 0 0 1.9291746928241125 0 0.3807196863200844 0 TP{M(Oxidation (M))|F}DPE 5.1661 - 468 NaN NaN 167025.6 NaN 19571 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24110 95.794 NaN 661550 35 0 100500 0.261 + 19933 NYFPGGVALIW 11 69 618.8242605666109 1235.6339682000216 2 618.8237915039062 MULTI HCD FTMS 0 0 0 24107 211993.71875 0.4667627099763371 -6 0.16017913818359375 3 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 136.33342141710068 0.0032144099819287736 2 [YN]{M(Oxidation (M))|F}PNVA{I|L}{I|L}W 10 2 + 111.47 0 0 9.0212 9.0212 92.578 0 0 0 17.870156338638594 16.53212513775344 16.53212513775344 9.164539485499247 0 3.5356668758921828 1.2218487496163564 0 1.6549471895720984 [YN]{M(Oxidation (M))|F}PNVA{I|L}{I|L}W;[YN]{M(Oxidation (M))|F}PGGVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}[YG]PNVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AVNP[YG]W;{[CT]|[{M(Oxidation (M))|F}G]}[YG]PGGVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AVGGP[YG]W 9.0212;8.2795;6.8215;5.8259;5.0515;4.7434 -;+;-;-;-;- + 458 NaN NaN 194654.3 NaN 19572 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24111 95.797 NaN 278720 35 0 93941 0.261 + 23089 REMQQCWGE 9 44 583.7399530572363 1165.4653531812726 2 583.7402954101562 MULTI HCD FTMS 0 0 0 24107 84703.1640625 0.03154829154877237 12 -0.2216644287109375 4 Unmodified _REMQQCWGE_ REV__ENSG00000170579|ENST00000315677|DLGAP1;REV__nc|ENSG00000170579|O14490-2|DLGAP1;REV__nc|ENSG00000170579|O14490-3|DLGAP1;REV__nc|ENSG00000170579|O14490-4|DLGAP1;REV__nc|ENSG00000170579|O14490-5|DLGAP1;REV__nc|ENSG00000170579|O14490-6|DLGAP1;REV__nc|ENSG00000170579|O14490-7|DLGAP1 1.4819007175156935 0.3397831423917744 2 [Y{I|L}]{I|L} 3 -1 8.9524 0 0 0.76814 0 0 0 773.2125815350413 773.2125815350413 1.962724883926656 0 0 0 0 0 0 0 0 [Y{I|L}]{I|L} 0.76814 - 15 NaN NaN 142879.1 NaN 19573 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24112 95.8 NaN 155580 35 0 21011 0.261 + 7775 FYNPFQFEI 9 39 602.78739378529 1203.5602346373798 2 602.7875366210938 MULTI HCD FTMS 0 0 0 24107 71615.1796875 0.10307070252495781 13 -0.24448394775390625 5 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 19.361941925380144 0.1930734562688509 2 Q{M(Oxidation (M))|F}E{I|L} 4 5 39.24 0 0 3.2603 0 0 668.2966175763687 0 668.2966175763687 0 22.897131498072127 0 0 0 0.8807196863200843 0 0 0 + Q{M(Oxidation (M))|F}E{I|L} 3.2603 + + 90 NaN NaN 117347.7 NaN 19574 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24113 95.804 NaN 444530 35 0 47633 0.261 + 29314 TYNIFAITF 9 64 545.2843302665717 1088.5541075999433 2 545.2849731445312 MULTI HCD FTMS 0 0 0 24107 96501.6484375 0.09167424321948743 -6 0.16017913818359375 6 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 96.36657018975838 0.004359138328518304 2 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 2 + 94.741 0 0 8.7034 8.7034 90.29 0 0 0 18.604159301997 16.478174818886373 16.478174818886373 4.532796692927263 0 2.3494850021680094 1.3010299956639813 1.1307196863200843 0.805462187404089 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[YT]N{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VS]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[YT]{[VA]|[{I|L}G]}G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[QS]|[NT]}A{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}Y{[QS]|[NT]}A{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CA]|SS}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}T{M(Oxidation (M))|F} 8.7034;8.287;6.9943;6.4497;6.4079;6.3769;6.3769;6.1302;5.7646;4.5706 -;-;+;-;-;-;-;-;-;- + 428 NaN NaN 156610.1 NaN 19575 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24114 95.807 NaN 185160 35 0 28038 0.261 -1 LEMYCEEPFV 10 45 638.2666900786223 1274.5188272240446 2 638.2667846679688 MULTI HCD FTMS 0 0 0 24107 66050.25 0.28120136228346454 15 -0.28150177001953125 7 Oxidation (M) _LEM(Oxidation (M))YCEEPFV_ ENSG00000177192|ENST00000376649|PUS1;ENST00000543754.1_1_12:132425763-132428128:+|nuORF;nc|ENSG00000177192|Q9Y606-2|PUS1 1.4819007175156935 0.4674597685733628 2 MS 2 -1 17.959 0 0 1.4091 0 0 1038.4266659201412 0 1038.4266659201412 0 15.484550065040281 0 0 0 0 0 0 0 MS 1.4091 - 5 NaN NaN 130055.3 NaN 19576 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24115 95.81 NaN 353760 35 0 70561 0.262 + 28271 TLMEEVLLL 9 58 530.8016177446751 1059.5886825561502 2 530.8007202148438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 28.486842064014134 0.11819662193267319 2 V{I|L}{I|L}{I|L} 4 5 43.175 0 0 4.0747 0 0 603.2587147443375 0 603.2587147443375 0 24.478662999311425 0 0 0 1.274227503252014 0 0 0 + V{I|L}{I|L}{I|L} 4.0747 + + 39 NaN NaN 159042.5 NaN 19577 4536 24107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24117 95.815 NaN 313980 35 0 47281 0.327 + 20679 PFLPASNLFF 10 46 576.8081447393167 NaN 0 576.8080444335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 55.50274090549119 0.06160150910940775 2 {M(Oxidation (M))|F}{I|L}NS[PA]{I|L} 7 7 45.265 0 0 3.9307 0 0 165.07887915620694 241.0979403131469 406.17681946935386 0 0 0 0 0 2.2302046884880937 0 0 0.4247425010840047 {M(Oxidation (M))|F}{I|L}NS[PA]{I|L} 3.9307 - 38 + NaN NaN 144842.9 NaN 19578 4537 24116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24118 95.82 NaN 117440 35 0 21902 0.261 + 7649 FYIPSTILL 9 26 533.8128315566657 1065.6111101801314 2 533.81298828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FYIPSTILL_ ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1 36.04419817259434 0.08350412372117409 2 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 6 5 41.669 0 0 3.9103 0 0 310.13243300605626 0 310.13243300605626 0 41.66895006820745 0 0 0 1.3252574989159953 0 0 0 {I|L}{[RE]|[WV]}{I|L}{I|L}{I|L} 3.9103 - 21 NaN NaN 102117.4 NaN 19579 4537 24116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24119 95.823 NaN 315930 35 0 37937 0.261 + 7791 FYPFPVPPL 9 50 538.7942775724679 1075.5740022117357 2 538.7946166992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 36.466142684027034 0.08156716203802528 2 K{I|L}N 3 9 23.812 0 0 2.2139 0 0 702.3265858380875 0 702.3265858380875 0 8.354706403678874 0 0 0 0 0 0 0 K{I|L}N 2.2139 - 26 NaN NaN 154123.4 NaN 19580 4537 24116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24120 95.826 NaN 180360 35 0 14291 0.261 -1 0 67 472.283751677077 1413.8294256314311 3 472.28375244140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 [EP]{I|L} 3 -1 18.996 0 0 1.3436 0 0 0 1071.627465752778 1071.627465752778 9.30355694426034 0 0 0 0 0 1.154901959985743 0 0 [EP]{I|L} 1.3436 - 26 NaN NaN 128932 NaN 19581 4537 24116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24121 95.83 NaN 225010 35 0 25361 0.261 + 20442 PALALLSDYVL 11 50 587.8396590910556 NaN 0 587.839111328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PALALLSDYVL_ ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2 26.268140514670165 0.2078196763510663 2 V{[YD]|[{M(Oxidation (M))|F}M]}{I|L}S 5 9 22.747 0 0 1.9381 0 0 131.09494081458712 462.2705307230058 593.3654715375928 0 0 0 0 0 1.0044321917401078 0 0.3494850021680094 0 V{[YD]|[{M(Oxidation (M))|F}M]}{I|L}S 1.9381 - 39 + NaN NaN 129972.2 NaN 19582 4537 24116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24124 95.841 NaN 3556000 35 0 1031800 0.327 + 998 AYFNFPELL 9 93 557.284304073753 1112.554055214306 2 557.2847290039062 MULTI HCD FTMS 0 0 0 24123 717954.9375 0.011810649674867611 16 -0.3142242431640625 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 181.3275282027936 9.859558525874733E-13 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 107.6 0 0 9.671 9.671 97.489 0 0 0 22.364167856113113 88.21939903512066 22.364167856113113 27.50508444608478 0 2.586696871556164 1.3979400086720375 0.5629529932484498 1.829689690656103 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}P[RK]A;{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}Y{M(Oxidation (M))|F}APE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}P[RK]A;{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[K{I|L}]{[CA]|SS}A{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N[K{I|L}]{[CA]|SS}{I|L}A;[HQ]VV[{M(Oxidation (M))|F}E]E{I|L}{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}YA[K{I|L}]{[CA]|SS}A{I|L} 9.671;7.1988;6.5904;6.5527;5.3735;4.8045;4.0492;3.1769;1.6515;0.96863 +;-;-;-;-;-;-;-;-;- + 1591 NaN NaN 635412.6 NaN 19583 4539 24123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24125 95.846 NaN 647060 35 0 71711 0.261 + 26159 SPMDIFDMF 9 69 559.7303004376607 NaN 0 559.7301635742188 PEAK HCD FTMS 0 0 0 24123 244185.171875 0.4888847115771681 -4 0.0857391357421875 2 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 100.37149154755038 2.9699053121473635E-05 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}S 5 6 54.425 0 0 4.8705 0 0 165.08044472541025 340.096465820079 505.17691054548925 0 0 0 0 0 2.3494850021680094 0 1.1237125054200234 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}S 4.8705 - 335 + NaN NaN 208261.1 NaN 19584 4539 24123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24126 95.849 NaN 650690 35 0 101360 0.261 + 34539 YPIAVLIDEL 10 60 573.3261374368194 1144.6377219404387 2 573.3263549804688 MULTI HCD FTMS 0 0 0 24123 61799.328125 0.1577660118566723 -1 0.00716400146484375 3 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 96.28474662873226 0.000520040862558024 2 D{I|L}{I|L}VA{[QN]|[E{I|L}]|[KN]}{I|L} 8 5 70.399 0 0 6.1503 0 0 260.13716323066564 0 260.13716323066564 0 48.18040976044614 0 0 0 2.7614393726401687 0 1.305462187404089 0 D{I|L}{I|L}VA{[QN]|[E{I|L}]|[KN]}{I|L} 6.1503 - 140 NaN NaN 188653.2 NaN 19585 4539 24123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24127 95.853 NaN 568970 35 0 43800 0.261 + 1644 CARRPLHLL 9 76 539.8182388740803 1077.6219248149605 2 539.8184204101562 MULTI HCD FTMS 0 0 0 24123 71868.90625 0.4112448892901946 -4 0.0857391357421875 4 Unmodified _CARRPLHLL_ REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF 21.74664581756881 0.17247014374749275 2 V{I|L}{I|L}H{I|L}{I|L} 6 -1 48.709 0 0 4.5201 0 0 371.1478749005875 0 371.1478749005875 0 24.487606623646982 0 0 0 2.1989700043360187 0 0 0 V{I|L}{I|L}H{I|L}{I|L} 4.5201 - 339 NaN NaN 184512.4 NaN 19586 4539 24123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24128 95.856 NaN 159900 35 0 9499 0.261 -1 LYLEDFFVM 9 54 596.7839151415415 1191.5532773498828 2 596.7828979492188 MULTI HCD FTMS 0 0 0 24123 32443.90234375 0.16332810120568358 17 -0.32373809814453125 5 Oxidation (M) _LYLEDFFVM(Oxidation (M))_ ENSG00000130066|ENST00000379270|SAT1;ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENST00000474223.1_1_X:23803122-23803970:+|nuORF 37.97399986684836 0.07464525285885698 2 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 5 -1 45.534 0 0 3.8214 0 0 518.2745838849625 0 518.2745838849625 0 34.73197507588033 0 0 0 1.774227503252014 0 0 0 D{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.8214 + + 109 NaN NaN 121079.5 NaN 19587 4539 24123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24129 95.859 NaN 74396 35 0 7847.3 0.262 + 18747 NAAAIFDLF 9 34 491.255743480666 NaN 0 491.2557373046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NAAAIFDLF_ ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion;UBE2G1-ANKFY1|3|fusion;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|6|fusion;UBE2G1-ANKFY1|7|fusion 9.38312468134398 0.24977752951804 2 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.4257 0 0 393.19267403906434 437.2146090143188 830.4072830533831 0 0 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.4257 + + 8 + NaN NaN 100805.2 NaN 19588 4539 24123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24131 95.864 NaN 471570 35 0 36672 0.327 -1 0 79 466.6081157643612 1396.8025178932835 3 466.6080322265625 MULTI HCD FTMS 0 0 0 24130 160723.5625 0.2712048072315179 15 -0.2917938232421875 1 NaN NaN 2 Q 1 -1 9.2917 0 0 0.66522 0 0 722.4298896023417 543.3017754174012 1265.731665019743 0 0 0 0 0 0.3807196863200844 0 0 0 Q 0.66522 - 29 + NaN NaN 165040.1 NaN 19589 4540 24130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24132 95.869 NaN 148200 35 0 16234 0.261 + 14807 LIPEEFFQF 9 48 585.2975350802387 1168.5805172272774 2 585.8128051757812 MULTI HCD FTMS 0 0 0 24130 39516.6171875 0.7427200432757919 -3 0.049041748046875 2 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 27.167 0 0 2.3248 0 0 728.3746512711322 0 728.3746512711322 0 16.197887582883936 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.3248 + + 66 NaN NaN 114014.4 NaN 19590 4540 24130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24134 95.874 NaN 154370 35 0 42031 0.327 + 33356 YGGCLPFS 8 30 422.18878024523815 842.3630075572763 2 422.1886901855469 MULTI HCD FTMS 0 0 0 24133 197934.265625 0.484612053448977 7 -0.1333770751953125 1 Unmodified _YGGCLPFS_ REV__ENST00000394156.7_2_16:64981508-64982584:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 11.99 0 0 1.4233 0 0 155.09567099183613 571.1577852838499 726.253456275686 0 0 0 0 0 0.5 0 0 0 {I|L} 1.4233 + + 1 + NaN NaN 114234.2 NaN 19591 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24135 95.878 NaN 88575 35 0 12990 0.261 + 31163 VTYVELLPL 9 33 523.8103487906573 1045.6061446481144 2 523.8107299804688 MULTI HCD FTMS 0 0 0 24133 39460.1171875 0.5626713754843965 3 -0.0584564208984375 2 Unmodified _VTYVELLPL_ REV__ENSG00000188994|ENST00000369577|ZNF292;REV__ZNF292|p.L151*|1|0.33|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant;REV__ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;REV__ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant 16.942295170755138 0.21397866736869717 2 S{I|L}[{I|L}P]{I|L} 5 -1 30.506 0 0 2.9176 0 0 504.27348525215 0 504.27348525215 0 30.50637409205253 0 0 0 0.9247425010840047 0 0.4247425010840047 0 S{I|L}[{I|L}P]{I|L} 2.9176 - 9 NaN NaN 102986.1 NaN 19592 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24136 95.882 NaN 175200 35 0 40897 0.261 + 10260 IIYETAMFPL 10 45 599.3149317879667 1196.6153106427332 2 599.3154296875 MULTI HCD FTMS 0 0 0 24133 70849.8828125 0.5077969879292747 11 -0.20941925048828125 3 Unmodified _IIYETAMFPL_ REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1 7.289230182591677 0.43672065049472153 2 [Y{I|L}]{I|L}EGD{I|L} 7 -1 37.924 0 0 3.1693 0 0 0 390.17241448478325 390.17241448478325 12.914025960176119 0 0 0 0 0 1.6989700043360187 0 0 [Y{I|L}]{I|L}EGD{I|L} 3.1693 - 231 NaN NaN 131767.3 NaN 19593 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24137 95.885 NaN 228280 35 0 27697 0.261 + -1 FHCVIHAPF 9 54 564.2745171252064 NaN 0 564.2576904296875 PEAK HCD FTMS 0 0 0 24133 22316.189453125 0.9793550867816807 3 -0.0584564208984375 4 Carbamidomethyl (C) _FHC(Carbamidomethyl (C))VIHAPF_ REV__ENST00000425534.7_1_3:71732810-71732897:-|nuORF 5.230669730166228 0.26989974671959066 2 M 1 -1 6.9897 0 0 0.62046 0 0 147.102430977069 845.3487642877561 992.4511952648252 0 0 0 0 0 0 0 0 0 M 0.62046 - 6 + NaN NaN 149328.7 NaN 19594 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24138 95.888 NaN 122170 35 0 17250 0.261 + 35011 YTCLATNSRE 10 46 579.2667682428036 1156.518983552407 2 579.2662963867188 MULTI HCD FTMS 0 0 0 24133 43230.7734375 0.0791150969785409 19 -0.37256622314453125 5 Unmodified _YTCLATNSRE_ SDK2|p.G482E|1|0.11|ENSG00000069188|chr17:73431537-73431537|C/T|missense_variant 5.296884461304476 0.4472664531305844 2 [YT]N 3 7 29.309 0 0 2.5343 0 0 0 775.3465670221311 775.3465670221311 28.339993556128107 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 [YT]N 2.5343 - 15 + NaN NaN 101964.5 NaN 19595 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24139 95.892 NaN 41483 35 0 4496.8 0.261 + 33291 YFNDLNKNQL 10 30 634.8188530548716 NaN 0 634.8193359375 PEAK HCD FTMS 0 0 0 24133 20360.970703125 0.39928619015456723 -2 0.0320587158203125 6 Unmodified _YFNDLNKNQL_ tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1 4.897010918128616 0.3359931263921593 2 V 1 10 3.0989 0 0 0.24447 0 0 656.2109960493932 509.33570276431874 1165.5466988137118 0 0 0 0 0 0 0 0 0 V 0.24447 - 4 + NaN NaN 98234.2 NaN 19596 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24140 95.895 NaN 67960 35 0 16642 0.263 + 18499 MRKVCLML 8 28 497.2729552767768 NaN 0 497.46343994140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _MRKVCLML_ ENST00000560532.1_1_15:59193425-59193485:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98236 NaN 19597 4541 24133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24142 95.9 NaN 138230 35 0 16094 0.327 + 29483 TYVGIGWLI 9 41 511.2893320207382 1020.5641111082764 2 511.28948974609375 MULTI HCD FTMS 0 0 0 24141 20044.912109375 0.25165514278610307 6 -0.10741424560546875 1 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 26.88365393820708 0.12808753336095696 2 YGW{I|L}{I|L} 5 4 39.68 0 0 3.8881 0 0 370.2201405255875 0 370.2201405255875 0 38.7113751626007 0 0 0 0.9247425010840047 0 0 0 YGW{I|L}{I|L} 3.8881 - 30 NaN NaN 108838.9 NaN 19598 4542 24141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24143 95.904 NaN 164740 35 0 7648.3 0.261 + 6172 FPEIQGFLQL 10 55 596.3243212073567 1190.6340894815132 2 596.8264770507812 MULTI HCD FTMS 0 0 0 24141 22393.376953125 0.08777891184919905 -13 0.2904205322265625 2 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 27.223235318498237 0.2564750587861972 2 {I|L}M{M(Oxidation (M))|F}{[QG]|[NA]}{I|L}Q{I|L} 8 5 35.711 0 0 2.9993 0 0 242.1260700910172 0 242.1260700910172 0 21.274269105803327 0 0 0 0.7742275032520141 0 0 0 {I|L}M{M(Oxidation (M))|F}{[QG]|[NA]}{I|L}Q{I|L} 2.9993 - 187 NaN NaN 127390.5 NaN 19599 4542 24141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24144 95.908 NaN 87039 35 0 8744.3 0.262 + 10632 IPSPSPEVGK 10 31 505.7799377441406 NaN 0 505.7799377441406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IPSPSPEVGK_ REV__ENSG00000070010|ENST00000263202|UFD1;REV__ENST00000459854.5_1_22:19442175-19463025:-|nuORF;REV__ENST00000466373.1_1_22:19439515-19452862:-|nuORF;REV__nc|ENSG00000070010|Q92890-1|UFD1;REV__nc|ENSG00000070010|Q92890-3|UFD1 1.3295316138638542 0.339046394236575 2 E 1 -1 1.5938 0 0 0.15787 0 0 578.3073453107438 299.1733797662719 877.4807250770157 0 0 0 0 0 0 0 0 0 E 0.15787 + + 1 + NaN NaN 97908.1 NaN 19600 4542 24141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24145 95.911 NaN 60782 35 0 7382.2 0.261 + 27267 SYPNVFLVF 9 37 543.2870087051799 1084.5594644771597 2 543.2777709960938 MULTI HCD FTMS 0 0 0 24141 20679.103515625 0.0072621119810112825 -11 0.26171875 4 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F}[{I|L}V]{M(Oxidation (M))|F} 4 5 24.693 0 0 2.2768 0 0 560.2609120099625 0 560.2609120099625 0 11.197887582883936 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}[{I|L}V]{M(Oxidation (M))|F} 2.2768 + + 8 NaN NaN 120359.7 NaN 19601 4542 24141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24147 95.916 NaN 1164600 35 0 143920 0.327 + 5872 FPDFPTPGVVF 11 56 611.8113504571921 NaN 0 611.8110961914062 PEAK HCD FTMS 0 0 0 24146 1122422.25 0.8932879681394438 5 -0.09117889404296875 1 Unmodified _FPDFPTPGVVF_ ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;nc|ENSG00000198931|P07741-2|APRT 75.76082778847304 0.0023606444699420695 2 VV[PG]TP{M(Oxidation (M))|F} 7 7 38.65 0 0 3.1638 0 0 165.08110903076619 356.1243990533813 521.2055080841475 0 0 0 0 0 2.337180496500464 0 1.2302046884880937 0 VV[PG]TP{M(Oxidation (M))|F} 3.1638 - 72 + NaN NaN 275184.9 NaN 19602 4543 24146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24148 95.921 NaN 177970 35 0 17914 0.261 -1 0 42 622.8019025252823 1243.5892521173646 2 622.8021240234375 MULTI HCD FTMS 0 0 0 24146 195116.59375 0.2158097101271445 21 -0.3818359375 2 NaN NaN 2 TP{M(Oxidation (M))|F}DPE 6 -1 51.988 0 0 4.1804 0 0 539.2644662227204 0 539.2644662227204 0 26.771081482726373 0 0 0 1.2614393726401687 0 0.4247425010840047 0 TP{M(Oxidation (M))|F}DPE 4.1804 - 101 NaN NaN 119554.9 NaN 19603 4543 24146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24149 95.924 NaN 98804 35 0 29121 0.264 -1 KKCHQCVETI 10 35 434.88229119213497 NaN 0 434.88214111328125 PEAK HCD FTMS 0 0 0 24146 50719.5 0.42938818379817734 -5 0.0814208984375 3 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100143.2 NaN 19604 4543 24146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24150 95.927 NaN 207220 35 0 14805 0.261 + 12296 KLPALFFLF 9 64 548.3337170979338 NaN 0 548.3334350585938 PEAK HCD FTMS 0 0 0 24146 42312.87890625 0.7736283788802486 2 -0.03914642333984375 4 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 36.04419817259434 0.09096180745216527 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 25.974 0 0 2.3728 0 0 165.08090747974035 519.3294501009246 684.410357580665 0 0 0 0 0 1.579689690656103 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3728 + + 95 + NaN NaN 126103.9 NaN 19605 4543 24146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24152 95.932 NaN 1734300 35 0 196390 0.327 + 29315 TYNIFAITF 9 67 545.2843302665717 1088.5541075999433 2 545.2845458984375 MULTI HCD FTMS 0 0 0 24151 737704.8125 0.7008018153090046 1 -0.02288818359375 1 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 176.83740622441886 1.0594397382223596E-10 2 [YT]N{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 0 + 114.01 0 0 10.474 10.474 91.23 0 0 0 3.3099321904142442 16.478174818886373 3.3099321904142442 3.3099321904142442 0 2.3494850021680094 1.154901959985743 1.8243923658886185 1.610924374808178 + + [YT]N{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}[YN]A{I|L}T{M(Oxidation (M))|F};[{I|L}T][YG]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[YT]GG{I|L}{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[YT]{[VA]|[{I|L}G]}G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}A[YN]{I|L}T{M(Oxidation (M))|F};[{I|L}T]A{M(Oxidation (M))|F}[YN]{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}[YN]A{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][VS]G{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 10.474;10.17;9.0067;8.7367;8.1479;7.8713;7.784;7.5801;7.2842;7.0142 +;-;-;-;-;-;-;-;-;- + 1211 NaN NaN 355679.2 NaN 19606 4544 24151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24153 95.937 NaN 551680 35 0 87080 0.261 + 19934 NYFPGGVALIW 11 61 618.8242605666109 1235.6339682000216 2 618.82421875 MULTI HCD FTMS 0 0 0 24151 257982 0.5680186099623077 1 -0.02288818359375 2 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 103.74828524460852 0.021254478580558435 2 [YN]{M(Oxidation (M))|F}PNVA{I|L}{I|L}W 10 2 + 80.252 0 0 6.4948 6.4948 90.606 0 0 0 9.572034164243561 64.05455634180576 9.572034164243561 11.154239528859435 0 2.9489700043360187 0 0 1.5356668758921828 [YN]{M(Oxidation (M))|F}PNVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}[YG]PNVA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AVNP[YG]W;[YN]{M(Oxidation (M))|F}P{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L}[VS];{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}AVGGP[YG]W;{[CT]|[{M(Oxidation (M))|F}G]}[YG]P{[{M(Oxidation (M))|F}H]|[RQ]}{I|L}{I|L}[VS] 6.4948;5.5921;5.1761;4.3472;4.0936;3.4445 -;-;-;-;-;- 353 NaN NaN 179010.8 NaN 19607 4544 24151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24154 95.94 NaN 137790 35 0 17115 0.261 + 14808 LIPEEFFQF 9 49 585.2975350802387 1168.5805172272774 2 585.29736328125 MULTI HCD FTMS 0 0 0 24151 47236.2109375 0.6905607464253506 1 -0.02288818359375 3 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 32.435 0 0 2.7756 0 0 728.3737019619247 0 728.3737019619247 0 22.971062485323515 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.7756 + + 77 NaN NaN 108045.5 NaN 19608 4544 24151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24155 95.944 NaN 91509 35 0 13945 0.261 -1 0 32 638.2666900786223 1274.5188272240446 2 638.2671508789062 MULTI HCD FTMS 0 0 0 24151 30892.431640625 0.13152098382053898 22 -0.4037628173828125 4 NaN NaN 2 MS 2 -1 17.959 0 0 1.4091 0 0 1038.426497634062 0 1038.426497634062 0 17.95880017344075 0 0 0 0 0 0 0 MS 1.4091 - 2 NaN NaN 109541.8 NaN 19609 4544 24151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24156 95.947 NaN 131150 35 0 11457 0.261 + 7776 FYNPFQFEI 9 46 602.78739378529 1203.5602346373798 2 602.7875366210938 MULTI HCD FTMS 0 0 0 24151 36573.734375 0.05263800932207148 20 -0.36557769775390625 5 Unmodified _FYNPFQFEI_ ENSG00000111875|ENST00000229595|ASF1A;ENST00000511766.2_1_6:119215493-119222091:+|nuORF 19.361941925380144 0.1930734562688509 2 Q{M(Oxidation (M))|F}E{I|L} 4 5 34.302 0 0 2.85 0 0 668.291795799025 0 668.291795799025 0 21.955298821486892 0 0 0 0.7134679910804405 0 0 0 + Q{M(Oxidation (M))|F}E{I|L} 2.85 + + 46 NaN NaN 107077.5 NaN 19610 4544 24151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24157 95.95 NaN 65004 35 0 8192.8 0.262 + 23968 RVMWPMPP 8 42 507.25653761082606 NaN 0 506.77862548828125 PEAK HCD FTMS 0 0 0 24151 6056.431640625 0.44094669017989496 -2 0.03249359130859375 6 Unmodified _RVMWPMPP_ ENST00000398027.6_1_7:100004915-100013606:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90265.9 NaN 19611 4544 24151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24159 95.955 NaN 792790 35 0 218190 0.327 + 28272 TLMEEVLLL 9 48 530.8016177446751 1059.5886825561502 2 530.8017578125 MULTI HCD FTMS 0 0 0 24158 329427.9375 0.5102616786131322 -6 0.1134033203125 1 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 28.486842064014134 0.11819662193267319 2 V{I|L}{I|L}{I|L} 4 5 46.186 0 0 4.3588 0 0 603.2573585670543 0 603.2573585670543 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 + V{I|L}{I|L}{I|L} 4.3588 + + 28 NaN NaN 223078.5 NaN 19612 4545 24158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24160 95.96 NaN 319200 35 0 41265 0.261 + 20680 PFLPASNLFF 10 61 576.8081447393167 NaN 0 576.80810546875 PEAK HCD FTMS 0 0 0 24158 106347.2890625 0.3001363356786639 7 -0.12807464599609375 2 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 60.07390631473393 0.05021532151793393 2 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}S[PA]{I|L} 7 7 23.505 0 0 2.041 0 0 165.0811888441761 241.09760461978752 406.17879346396364 0 0 0 0 0 2.2302046884880937 0 0 0.4247425010840047 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}S[PA]{I|L} 2.041 - 63 + NaN NaN 148634.8 NaN 19613 4545 24158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24161 95.963 NaN 782050 35 0 78983 0.261 + 30521 VMPSSFFLL 9 62 520.7780883963828 1039.5416238595656 2 520.7780151367188 MULTI HCD FTMS 0 0 0 24158 190328.640625 1 0 0 3 Unmodified _VMPSSFFLL_ ENSG00000143155|ENST00000367833|TIPRL 85.35673624503755 0.00464763827098139 2 {[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 47.118 0 0 4.5326 4.5326 88.878 0 0 0 9.234914502315497 9.234914502315497 9.234914502315497 17.729764523995595 0 2.110924374808178 0 0.7134679910804405 0 + + {[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ET]|[MV]}[PS]S{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F};[VS]{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[VS]{NN|[MP]|[D{I|L}]|[EV]}S{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 4.5326;2.827;2.6988;1.8816 +;-;-;- + 84 NaN NaN 216588.7 NaN 19614 4545 24158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24162 95.967 NaN 161460 35 0 15752 0.261 -1 0 48 581.2469084028877 1160.4792638725753 2 581.2465209960938 MULTI HCD FTMS 0 0 0 24158 41218.7578125 0.13514965798126205 -6 0.1134033203125 4 NaN NaN 2 {[YD]|[{M(Oxidation (M))|F}M]}P{M(Oxidation (M))|F}V{[DA]|[EG]}TS 9 -1 66.207 0 0 5.7051 0 0 0 162.05524287920346 162.05524287920346 52.48319373273603 0 0 0 0 2.5114393726401687 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}P{M(Oxidation (M))|F}V{[DA]|[EG]}TS 5.7051 - 248 NaN NaN 133059.6 NaN 19615 4545 24158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24163 95.97 NaN 69972 35 0 19140 0.263 + 3551 EISHPEHG 8 39 453.20954507400995 NaN 0 453.2093811035156 PEAK HCD FTMS 0 0 0 24158 32984.7890625 0.8172664040168275 -2 0.03914642333984375 5 Unmodified _EISHPEHG_ ENST00000500626.2_1_1:155619824-155629984:-|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97145 NaN 19616 4545 24158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24164 95.973 NaN 39453 35 0 4644.3 0.261 + 18087 MMTPKRVYGW 10 36 634.8188530548716 NaN 0 634.8191528320312 PEAK HCD FTMS 0 0 0 24158 24939.283203125 0.4890685970012832 2 -0.035797119140625 6 Unmodified _MMTPKRVYGW_ ENST00000378192.2_1_9:35724919-35725570:-|nuORF 2.9952420565917617 0.3376207769591857 2 W 1 9 3.9794 0 0 0.31393 0 0 751.8524755415807 326.65964685611567 1078.5121223976964 0 0 0 0 0 0 0 0 0 + W 0.31393 + + 1 + NaN NaN 97160.2 NaN 19617 4545 24158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24166 95.978 NaN 1913800 35 0 503510 0.327 + 999 AYFNFPELL 9 98 557.284304073753 1112.554055214306 2 557.2847290039062 MULTI HCD FTMS 0 0 0 24165 317836.90625 0.005228545911995333 23 -0.4158935546875 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 114.6490535036381 0.0021834323520089267 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 91.145 0 0 8.1924 8.1924 95.484 0 0 0 18.17332707455691 60.72358547869236 18.17332707455691 23.332567493688344 0 2.4604093769761874 1.5228787452803376 0.23965182871044374 1.4124379954164592 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{M(Oxidation (M))|F}T]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}[YT][{M(Oxidation (M))|F}T]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP][HT]H{I|L};[HQ]E{I|L}[MT]E{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}[DP]Y;HHK[HC]PE{I|L}{I|L} 8.1924;6.0952;3.8077;3.7993;3.2214;3.0357;2.224;2.2029;1.9651;1.9176 +;-;-;-;-;-;-;-;-;- + 2693 NaN NaN 378665.9 NaN 19618 4546 24165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24167 95.983 NaN 878110 35 0 99695 0.261 + 26160 SPMDIFDMF 9 71 559.7303004376607 NaN 0 559.7303466796875 PEAK HCD FTMS 0 0 0 24165 380356.625 0.7615144583995436 3 -0.0519866943359375 2 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 147.8311659463005 3.7527859035670186E-19 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}S 5 6 60.041 0 0 5.373 0 0 165.0799324746469 340.0963544823895 505.1762869570364 0 0 0 0 0 2.4247425010840047 0 1.8001648626366045 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L}S 5.373 - 411 + NaN NaN 244142.8 NaN 19619 4546 24165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24168 95.986 NaN 233320 35 0 12120 0.262 -1 0 65 472.283751677077 1413.8294256314311 3 472.2832336425781 MULTI HCD FTMS 0 0 0 24165 90830 0.2034335999157866 24 -0.42534637451171875 3 NaN NaN 2 K 1 -1 1.5938 0 0 0.11273 0 0 959.5521561995937 323.1706580713139 1282.7228142709075 0 0 0 0 0 0 0 0 0 K 0.11273 - 4 + NaN NaN 122211.8 NaN 19620 4546 24165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24170 95.991 NaN 1994200 35 0 362880 0.327 + 2863 DYNFVFTSF 9 96 570.2558216634868 1138.4970903937735 2 570.2560424804688 MULTI HCD FTMS 0 0 0 24169 845295.8125 0.40606397436783526 -4 0.07494354248046875 1 Unmodified _DYNFVFTSF_ ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 187.2963844392146 5.770654906347067E-13 2 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 9 0 + 107.51 0 0 9.4429 9.4429 96.983 0 0 0 22.079212030041546 80.33961429501608 22.079212030041546 24.124628150806373 0 2.853917193908117 1.3979400086720375 0.9436726795685342 1.4916440611282624 + + {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[{M(Oxidation (M))|F}E]S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}]V{[QD]|[EN]|[WG]|[KD]|[RS]}M{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}Q[{M(Oxidation (M))|F}E]S{M(Oxidation (M))|F};[{I|L}V][C(Carbamidomethyl (C))Q]V{[QD]|[EN]|[WG]|[KD]|[RS]}M{M(Oxidation (M))|F};{[MG]|[TS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG][{M(Oxidation (M))|F}E]S{M(Oxidation (M))|F};[YQ][YG]V[{M(Oxidation (M))|F}E]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YN]V[{M(Oxidation (M))|F}E]S{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}T{M(Oxidation (M))|F}[AG][{M(Oxidation (M))|F}E]S{M(Oxidation (M))|F} 9.4429;7.3239;4.0238;3.5873;3.5645;2.4318;2.4101;2.34;2.0756;1.9508 +;-;-;-;-;-;-;-;-;- + 1548 NaN NaN 387802.8 NaN 19621 4547 24169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24171 95.995 NaN 689980 35 0 102790 0.261 + 34540 YPIAVLIDEL 10 51 573.3261374368194 1144.6377219404387 2 573.8278198242188 MULTI HCD FTMS 0 0 0 24169 133193.546875 0.6098156693335234 7 -0.1422576904296875 2 Unmodified _YPIAVLIDEL_ ENSG00000105568|ENST00000322088|PPP2R1A;ENSG00000137713|ENST00000527614|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant 96.28474662873226 0.000520040862558024 2 D{I|L}{I|L}VA{I|L}E{I|L} 8 5 78.168 0 0 6.8291 0 0 260.13643080879064 0 260.13643080879064 0 55.94965995239981 0 0 0 1.8494850021680094 0 1.2302046884880937 0 D{I|L}{I|L}VA{I|L}E{I|L} 6.8291 - 175 NaN NaN 213314.2 NaN 19622 4547 24169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24172 95.999 NaN 212430 35 0 19997 0.261 + 14809 LIPEEFFQF 9 53 585.2975350802387 1168.5805172272774 2 585.8134155273438 MULTI HCD FTMS 0 0 0 24169 19538.779296875 0.3672339394861352 4 -0.07607269287109375 3 Unmodified _LIPEEFFQF_ ENSG00000116459|ENST00000369722|ATP5PB 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 3 6 26.414 0 0 2.2604 0 0 728.3743709907238 0 728.3743709907238 0 16.95046257204389 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}Q{M(Oxidation (M))|F} 2.2604 + + 171 NaN NaN 139127.2 NaN 19623 4547 24169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24173 96.002 NaN 58274 35 0 22168 0.261 -1 0 26 631.3988923706415 630.3916159040415 1 632.4022216796875 MULTI HCD FTMS 0 0 0 24169 14944.857421875 0.03358426293588276 -25 0.49784088134765625 4 NaN NaN 2 AS 2 -1 11.938 0 0 1.8938 0 0 0 469.2981356256469 469.2981356256469 6.453650195120844 0 0 0 0 0 0 0 0 AS 1.8938 - 2 + NaN NaN 110028.4 NaN 19624 4547 24169 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24175 96.007 NaN 89175 35 0 9982.9 0.327 + -1 SFTDLQCLL 9 37 548.7702286916743 1095.5259044501486 2 548.7705688476562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _SFTDLQC(Carbamidomethyl (C))LL_ REV__nc|ENSG00000170525|Q16875-4|PFKFB3 11.494710602746466 0.2610445893512368 2 C{I|L} 2 -1 25.969 0 0 2.3705 0 0 861.4231596306571 0 861.4231596306571 0 15.791812460476251 0 0 0 0.5 0 0 0 C{I|L} 2.3705 + + 10 NaN NaN 103591.5 NaN 19625 4548 24174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24176 96.012 NaN 460750 35 0 32564 0.261 + 26323 SSAGAPLLHLL 11 78 539.8187004130353 NaN 0 539.818115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SSAGAPLLHLL_ ENST00000526621.5_3_11:57193529-57194929:-|nuORF 22.736283301280096 0.2352529050846619 2 PV{I|L}{I|L}H 5 8 36.255 0 0 3.3644 0 0 274.09707734598175 241.15557275943596 515.2526501054177 0 0 0 0 0 1.6747425010840047 0 0 0 PV{I|L}{I|L}H 3.3644 - 217 + NaN NaN 163295.5 NaN 19626 4548 24174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24177 96.015 NaN 213650 35 0 66474 0.261 -1 MSHRDSNHQ 9 35 564.2348489366649 1126.4551449401297 2 564.2351684570312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _M(Oxidation (M))SHRDSNHQ_ ENSG00000157470|ENST00000288228|FAM81A 1.4819007175156935 0.3397831423917744 2 K 1 -1 2.4743 0 0 0.21965 0 0 603.5702705278235 391.7605379693969 995.3308084972205 0 0 0 0 0 0 0 0 0 K 0.21965 - 1 + NaN NaN 117078 NaN 19627 4548 24174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24178 96.019 NaN 41748 35 0 8262.1 0.261 + 10147 IFPQFLYQF 9 23 601.8153885201672 1201.6162241071343 2 601.8157348632812 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _IFPQFLYQF_ ENSG00000068650|ENST00000375645|ATP11A 1.844237919475145 0.33703635659052655 2 Y 1 8 8.9794 0 0 0.74728 0 0 456.19958034968585 579.3419893854124 1035.5415697350982 0 0 0 0 0 0.5 0 0 0 + Y 0.74728 + + 2 + NaN NaN 105864 NaN 19628 4548 24174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24179 96.022 NaN 116410 35 0 22016 0.261 -1 YIFPAVILMD 10 44 599.3149317879667 1196.6153106427332 2 599.3156127929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _YIFPAVILM(Oxidation (M))D_ tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1 3.5964929083625545 0.45626689593999237 2 [Y{I|L}]{I|L}WD{I|L}ND 8 -1 32.115 0 0 2.6839 0 0 0 161.09807366447072 161.09807366447072 21.630937864725155 0 0 0 0 0 0 0 0 [Y{I|L}]{I|L}WD{I|L}ND 2.6839 - 190 NaN NaN 119263.3 NaN 19629 4548 24174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24180 96.025 NaN 44354 35 0 5377.6 0.262 + 23334 RKFFHLWRRI 10 36 486.95913629624 1457.85557948892 3 486.959228515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _RKFFHLWRRI_ ENST00000370008.3_1_1:109351697-109351763:+|nuORF 0.15932191953741626 0.4744603884079788 2 K 1 9 3.9794 0 0 0.27296 0 0 1121.6503010238794 205.0863436334594 1326.7366446573387 0 0 0 0 0 0 0 0 0 + K 0.27296 + + 7 + NaN NaN 111161.9 NaN 19630 4548 24174 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24182 96.03 NaN 489830 35 0 37980 0.411 -1 0 91 466.6081157643612 1396.8025178932835 3 466.6080322265625 MULTI HCD FTMS 0 0 0 24181 262222.3125 0.4424737145393063 24 -0.42125701904296875 1 NaN NaN 2 SN{[HG]|PP}{[DS]|[MA]|[CV]|TT} 6 -1 10.551 0 0 0.75539 0 0 781.437791892775 0 781.437791892775 0 -2.7886903696344216 -2.7886903696344216 0 0 0.6989700043360187 0 0.3807196863200844 0 SN{[HG]|PP}{[DS]|[MA]|[CV]|TT} 0.75539 - 93 NaN NaN 243429.2 NaN 19631 4549 24181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24184 96.038 NaN 1473500 35 0 297740 0.327 + 27268 SYPNVFLVF 9 50 543.2870087051799 1084.5594644771597 2 543.2872314453125 MULTI HCD FTMS 0 0 0 24183 744523.1875 0.26146253177750706 -4 0.059661865234375 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 96.11092074494114 0.00436583732602279 2 {[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 9 0 + 86.609 0 0 7.9856 7.9856 92.035 0 0 0 16.478174818886373 63.93298474960609 16.478174818886373 9.208187539523749 0 2.8494850021680094 0 1.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PGGV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}V;{[{M(Oxidation (M))|F}C]|[YS]}PGGV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}V 7.9856;7.1366;6.8554;6.0064 +;-;-;- + 173 NaN NaN 303985.8 NaN 19632 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24185 96.042 NaN 526340 35 0 43292 0.261 + 14538 LFEQYFII 8 57 536.7893621077224 1071.5641712822446 2 537.7794189453125 MULTI HCD FTMS 0 0 0 24183 11850.2529296875 0.30023644996185767 -4 0.059661865234375 2 Unmodified _LFEQYFII_ REV__ENSG00000104361|ENST00000430223|NIPAL2;REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF;REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 28.486842064014134 0.3788298654084067 2 E{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{M(Oxidation (M))|F}{I|L}{I|L} 8 -1 + 25.653 0 0 2.394 2.394 82.687 0 0 0 11.708639835387302 5.484550065040281 5.484550065040281 6.8174968198406525 0 0.7059771852360797 0 0 0 E{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}Y{M(Oxidation (M))|F}{I|L}{I|L};E{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{M(Oxidation (M))|F}Y{I|L}{I|L} 2.394;1.7578 -;- 333 + NaN NaN 176051.7 NaN 19633 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24186 96.046 NaN 243910 35 0 25561 0.261 + 6173 FPEIQGFLQL 10 53 596.3243212073567 1190.6340894815132 2 596.3244018554688 MULTI HCD FTMS 0 0 0 24183 56348.703125 0.13828259978804666 -6 0.10541534423828125 3 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 32.037481411007896 0.2145045983280644 2 {I|L}Q{I|L} 3 7 35.445 0 0 2.977 0 0 818.3954664372952 0 818.3954664372952 0 20.28151250383644 0 0 0 0.9247425010840047 0 0 0 + {I|L}Q{I|L} 2.977 + + 81 NaN NaN 141850.1 NaN 19634 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24187 96.049 NaN 178620 35 0 14989 0.261 + 5904 FPDLAGAPFYF 11 54 622.8017795335077 NaN 0 622.802001953125 PEAK HCD FTMS 0 0 0 24183 52492.80859375 0.7084719761473731 1 -0.0293426513671875 4 Unmodified _FPDLAGAPFYF_ ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13 17.11289562659939 0.27893181706115244 2 PD{M(Oxidation (M))|F} 3 8 29.425 0 0 2.3661 0 0 147.0691805514187 734.348148858194 881.4173294096126 0 0 0 0 0 1.1989700043360187 0 0.4247425010840047 0 PD{M(Oxidation (M))|F} 2.3661 - 59 + NaN NaN 120515.9 NaN 19635 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24188 96.052 NaN 158650 35 0 29059 0.263 + 2374 DPFPAAIIL 9 44 478.7762896027608 955.5380262723216 2 478.77655029296875 MULTI HCD FTMS 0 0 0 24183 31515.865234375 0.06004184902837728 -14 0.25215911865234375 5 Unmodified _DPFPAAIIL_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 15.847184025352803 0.2234401846867398 2 {I|L}{I|L}{I|L} 3 6 33.94 0 0 3.5519 0 0 598.2733631818375 0 598.2733631818375 0 26.49288766643714 0 0 0 0.9247425010840047 0 0 0 + {I|L}{I|L}{I|L} 3.5519 + + 16 NaN NaN 126547.1 NaN 19636 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24189 96.056 NaN 111570 35 0 23418 0.261 -1 IYLTFPVAMF 10 40 609.3180454347088 NaN 0 609.3171997070312 PEAK HCD FTMS 0 0 0 24183 21306.615234375 0.44136666118851864 -1 0.0076751708984375 6 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 37.97399986684836 0.147754056278369 2 {M(Oxidation (M))|F}A[VP]{M(Oxidation (M))|F}T 6 -1 34.213 0 0 2.8122 0 0 165.07925385594245 386.2081392877563 551.2873931436988 0 0 0 0 0 1.5 0 0.3807196863200844 0 {M(Oxidation (M))|F}A[VP]{M(Oxidation (M))|F}T 2.8122 - 21 + NaN NaN 116201.4 NaN 19637 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24190 96.059 NaN 73762 35 0 7533.9 0.262 + 29484 TYVGIGWLI 9 42 511.288829385292 NaN 0 511.2887268066406 PEAK HCD FTMS 0 0 0 24183 20552.29296875 0.4854334095890266 -2 0.03049468994140625 7 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 21.74664581756881 0.17567436591797916 2 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y 4 6 13.94 0 0 1.3659 0 0 131.10083884695274 367.1964205377563 498.29725938470904 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}Y 1.3659 - 7 + NaN NaN 99844.2 NaN 19638 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24191 96.062 NaN 94774 35 0 7143.7 0.261 + 14355 LEAPHDAII 9 50 489.76701146693375 977.5194700006675 2 489.7672119140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LEAPHDAII_ REV__ENSG00000124813|ENST00000647337|RUNX2;REV__nc|ENSG00000124813|Q13950-2|RUNX2;REV__nc|ENSG00000124813|Q13950-3|RUNX2 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 25.969 0 0 2.6566 0 0 733.3413215150529 0 733.3413215150529 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6566 + + 4 NaN NaN 102755.6 NaN 19639 4550 24183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24193 96.067 NaN 558310 35 0 43695 0.327 + -1 MESMCCCIIQ 10 71 596.7116309072517 1191.4087088813033 2 596.7113647460938 MULTI HCD FTMS 0 0 0 24192 146025.046875 0.8255554450371021 -1 0.0293426513671875 1 2 Oxidation (M) _M(Oxidation (M))ESM(Oxidation (M))CCCIIQ_ REV__ENSG00000163625|ENST00000295888|WDFY3;REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 10.073929032068715 0.4168838835836452 2 {[QN]|[E{I|L}]|[KN]}{I|L}M{M(Oxidation (M))|F}{[QG]|[NA]}{I|L}Q 9 -1 17.571 0 0 1.4748 0 0 0 128.84807768443594 128.84807768443594 10.123337350737247 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}{I|L}M{M(Oxidation (M))|F}{[QG]|[NA]}{I|L}Q 1.4748 - 262 NaN NaN 168807 NaN 19640 4551 24192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24194 96.072 NaN 512580 35 0 43819 0.261 + 1874 CWCIFTFSF 9 74 577.2454826072894 1152.4764122813788 2 577.245849609375 MULTI HCD FTMS 0 0 0 24192 130526.671875 1 0 0 2 Unmodified _CWCIFTFSF_ REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF 15.847184025352803 0.2234401846867398 2 N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 7 -1 67.528 0 0 5.8594 0 0 292.06852761516626 0 292.06852761516626 0 61.81031895404267 0 0 0 2.9604093769761874 0 0.3494850021680094 0 N{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.8594 - 475 + NaN NaN 164345.2 NaN 19641 4551 24192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24195 96.075 NaN 120320 35 0 8373.1 0.261 + 22490 QRQRHVRLHQK 11 53 495.958854098594 1484.854732895982 3 495.9585266113281 MULTI HCD FTMS 0 0 0 24192 50869.96484375 0.40377354173219127 -12 0.22527313232421875 3 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.5059551277355931 0.4167017191902429 2 {I|L} 1 -1 6.9897 0 0 0.47073 0 0 739.4258521360194 629.3338106744749 1368.7596628104943 0 0 0 0 0 0 0 0 0 {I|L} 0.47073 + + 8 + NaN NaN 115090.4 NaN 19642 4551 24192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24196 96.078 NaN 349590 35 0 40863 0.261 + -1 ECLSLATCVQ 10 57 562.2603334362224 1122.5061139392446 2 563.2453002929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _ECLSLATC(Carbamidomethyl (C))VQ_ REV__ENSG00000178597|ENST00000319098|PSAPL1 8.745405648335112 0.42901288225909884 2 EY{I|L} 3 -1 23.188 0 0 2.0657 0 0 0 714.3100069635374 714.3100069635374 2.2184874961635614 0 0 0 0 0 0 0 0 EY{I|L} 2.0657 - 51 + NaN NaN 159862.3 NaN 19643 4551 24192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24198 96.083 NaN 1031300 35 0 271990 0.327 + 28273 TLMEEVLLL 9 53 530.8016177446751 1059.5886825561502 2 530.8018798828125 MULTI HCD FTMS 0 0 0 24197 645605.875 1 0 0 1 Unmodified _TLMEEVLLL_ ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L 36.04419817259434 0.08350412372117409 2 V{I|L}{I|L}{I|L} 4 5 46.938 0 0 4.4299 0 0 603.2551817223924 0 603.2551817223924 0 25.969100130080562 0 0 0 1.5 0 0 0 + V{I|L}{I|L}{I|L} 4.4299 + + 94 NaN NaN 263985 NaN 19644 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24199 96.088 NaN 675320 35 0 142880 0.261 -1 0 72 554.2779814834943 1106.5414100337885 2 554.2780151367188 MULTI HCD FTMS 0 0 0 24197 386518.53125 0.7922955894670736 -2 0.0455474853515625 2 NaN NaN 2 {M(Oxidation (M))|F}CP[KT]M{I|L} 7 -1 33.849 0 0 3.059 0 0 0 283.10447107486567 283.10447107486567 5.890172891584413 0 0 0 0 1.1237125054200234 0 0.3807196863200844 0 {M(Oxidation (M))|F}CP[KT]M{I|L} 3.059 - 402 + NaN NaN 196798.8 NaN 19645 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24200 96.091 NaN 364490 35 0 64213 0.261 + 35909 YYTDFLITL 9 53 574.7972805425874 1147.5800081519747 2 574.7971801757812 MULTI HCD FTMS 0 0 0 24197 440511.03125 0.74247666018596 -4 0.07604217529296875 3 Unmodified _YYTDFLITL_ ENSG00000127990|ENST00000648936|SGCE;ENST00000462731.1_1_7:94229956-94232691:-|nuORF;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE 61.357469665136826 0.01568246967499496 2 H{I|L}{I|L}T{I|L} 5 5 50.573 0 0 4.4069 0 0 552.224412986525 0 552.224412986525 0 23.1259189508755 0 0 0 1.5 0 0 0 H{I|L}{I|L}T{I|L} 4.4069 - 71 NaN NaN 143182.6 NaN 19646 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24201 96.095 NaN 159790 35 0 21643 0.261 + 19935 NYFPGGVALIW 11 47 618.8235819769325 NaN 0 618.8245239257812 PEAK HCD FTMS 0 0 0 24197 98958.03125 0.5840834678727597 3 -0.07274627685546875 4 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 32.78568957990786 0.15719548531320773 2 {I|L}{I|L}A 3 9 26.682 0 0 2.1594 0 0 204.0891277843146 731.3149451609237 935.4040729452383 0 0 0 0 0 1.3494850021680094 0 0 0 {I|L}{I|L}A 2.1594 - 18 + NaN NaN 105585.7 NaN 19647 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24202 96.098 NaN 251010 35 0 43121 0.261 + -1 DYYEWCLE 8 55 589.2294449780056 1176.4443370228112 2 589.229736328125 MULTI HCD FTMS 0 0 0 24197 60868.5546875 0.7592147609628354 1 -0.02972412109375 5 Carbamidomethyl (C) _DYYEWC(Carbamidomethyl (C))LE_ REV__ENSG00000196620|ENST00000338206|UGT2B15 19.438996006549623 0.45076845602799126 2 DY 2 -1 35.573 0 0 3.0238 0 0 0 895.3288774478234 895.3288774478234 10.356668758921828 0 0 0 0 0 1.6989700043360187 0 0 DY 3.0238 + + 37 + NaN NaN 134640 NaN 19648 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24203 96.101 NaN 162650 35 0 17321 0.261 + 17165 LYLRMDCKR 9 52 599.3149317879667 1196.6153106427332 2 599.301513671875 MULTI HCD FTMS 0 0 0 24197 38358.5078125 0.2749240218250933 21 -0.36803436279296875 6 Unmodified _LYLRMDCKR_ REV__ENST00000465664.1_1_3:121555513-121555606:+|nuORF 5.230669730166228 0.3113646817964458 2 [Y{I|L}]{I|L}WD{I|L} 6 -1 29.843 0 0 2.494 0 0 0 390.173332115381 390.173332115381 20.238956344972934 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]{I|L}WD{I|L} 2.494 - 169 NaN NaN 112535 NaN 19649 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24204 96.105 NaN 158610 35 0 14709 0.261 + 22010 QFPEGLFYEF 10 49 638.7978306086723 1275.5811082841444 2 638.7677612304688 MULTI HCD FTMS 0 0 0 24197 17969.3828125 0.948331268895737 2 -0.04998016357421875 7 Unmodified _QFPEGLFYEF_ ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256671|ENST00000632897|LIMS4;ENSG00000256977|ENST00000480744|LIMS3;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000256977|P0CW19-2|LIMS3 7.101721422024254 0.4377131641736035 2 QY{M(Oxidation (M))|F} 3 7 24.693 0 0 1.9358 0 0 166.0665163690408 668.3057288298495 834.3722451988904 0 0 0 0 0 0.8494850021680094 0 0 0 QY{M(Oxidation (M))|F} 1.9358 - 21 + NaN NaN 117721.8 NaN 19650 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24205 96.108 NaN 133370 35 0 36802 0.263 + 29485 TYVGIGWLI 9 39 511.288829385292 NaN 0 511.3836669921875 PEAK HCD FTMS 0 0 0 24197 42338.02734375 1 0 0 8 Unmodified _TYVGIGWLI_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-3|FKBP9 10.823927491677226 0.2427956001690155 2 Y 1 8 8.0989 0 0 0.79358 0 0 487.2794887492965 367.1971529596313 854.4766417089278 0 0 0 0 0 0.5 0 0 0 + Y 0.79358 + + 4 + NaN NaN 113212.3 NaN 19651 4552 24197 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24207 96.114 NaN 366550 35 0 42135 0.327 + -1 FFGIMCHSF 9 67 581.2469084028877 1160.4792638725753 2 581.2472534179688 MULTI HCD FTMS 0 0 0 24206 156387.4375 0.5127691811295046 1 -0.02025604248046875 1 Carbamidomethyl (C),Oxidation (M) _FFGIM(Oxidation (M))C(Carbamidomethyl (C))HSF_ REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF 23.1484247019978 0.1603590852062899 2 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F} 9 -1 + 76.225 0 0 6.5684 6.5684 89.556 0 0 0 24.794096047112504 53.706831207219494 24.794096047112504 9.208187539523749 0 2.7302046884880937 2 0.6861818737241735 0 {[YD]|[{M(Oxidation (M))|F}M]}N{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}GG{M(Oxidation (M))|F}[HM]TS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}]C(Carbamidomethyl (C)){M(Oxidation (M))|F}TS{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}[H{I|L}][CG]{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6.5684;5.775;3.9108;3.1173 -;-;-;- 673 NaN NaN 142964.2 NaN 19652 4553 24206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24208 96.118 NaN 256610 35 0 14725 0.261 + 6823 FPSPFDPLTL 10 66 567.2974062718864 1132.5802596105727 2 567.2977294921875 MULTI HCD FTMS 0 0 0 24206 69831.8125 0.4027873685197152 -9 0.18068695068359375 2 Unmodified _FPSPFDPLTL_ ENSG00000147130|ENST00000314425|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF;nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant 29.081581746732265 0.240155558137004 2 D[{I|L}P]T{I|L} 5 5 31.466 0 0 2.7783 0 0 575.2726307599625 0 575.2726307599625 0 15.268024924119672 0 0 0 0.9247425010840047 0 0.3494850021680094 0 + D[{I|L}P]T{I|L} 2.7783 + + 257 NaN NaN 134545.3 NaN 19653 4553 24206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24209 96.122 NaN 570710 35 0 71391 0.261 + 1875 CWCIFTFSF 9 88 577.2454826072894 1152.4764122813788 2 577.7648315429688 MULTI HCD FTMS 0 0 0 24206 34983.7890625 0.5957713099245481 -2 0.045928955078125 3 Unmodified _CWCIFTFSF_ REV__ENST00000248450.8_1_2:219128890-219129148:-|nuORF 21.74664581756881 0.17247014374749275 2 {[MG]|[TS]}CD{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 10 -1 {[MG]|[TS]}CD + + 59.365 1.9112 0.47062 5.151 5.151 62.538 0 0 0 0 52.91091137185069 0 0 0 2.4049471895720984 0 0.6694451763165201 0 {[MG]|[TS]}CD{M(Oxidation (M))|F}V{M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 5.151 - 819 + NaN NaN 198100.8 NaN 19654 4553 24206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24210 96.125 NaN 244150 35 0 23294 0.261 + 35946 YYVAVDEAQL 10 65 585.7880001427667 1169.5614473523333 2 585.7879028320312 MULTI HCD FTMS 0 0 0 24206 58956.71484375 0.6912111524241202 -1 0.02972412109375 4 Unmodified _YYVAVDEAQL_ REV__nc|ENSG00000211598|P06312|IGKV4-1 13.042465956692817 0.38911719078024076 2 YYTD{M(Oxidation (M))|F}{I|L}{I|L} 7 -1 54.958 0 0 4.699 0 0 0 251.10105310611564 251.10105310611564 31.14593550382132 0 0 0 0 1.1307196863200843 2 0.3252574989159953 0 YYTD{M(Oxidation (M))|F}{I|L}{I|L} 4.699 - 185 + NaN NaN 139363.6 NaN 19655 4553 24206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24211 96.128 NaN 73422 35 0 9055.8 0.264 + 33386 YGLSPFGC 8 34 422.18878024523815 842.3630075572763 2 422.18878173828125 MULTI HCD FTMS 0 0 0 24206 21510.7265625 0.05266575414679456 19 -0.32570648193359375 5 Unmodified _YGLSPFGC_ REV__ENSG00000182816|ENST00000399889|KRTAP13-2;REV__ENSG00000198390|ENST00000355459|KRTAP13-1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106519.8 NaN 19656 4553 24206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24213 96.133 NaN 3092300 35 0 582570 0.327 -1 0 85 570.2445433401911 569.237266873591 1 570.2559204101562 MULTI HCD FTMS 0 0 0 24212 126414.59375 1 0 0 1 NaN NaN 2 {M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 4 -1 36.402 0 0 6.3949 0 0 69.01049150022352 0 69.01049150022352 0 12.506513813140554 0 0 0 0 0 1.0484550065040281 0 {M(Oxidation (M))|F}TS{M(Oxidation (M))|F} 6.3949 - 68 + NaN NaN 576408.8 NaN 19657 4554 24212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24214 96.138 NaN 1160800 35 0 244140 0.261 + 1000 AYFNFPELL 9 84 557.284304073753 1112.554055214306 2 557.2847290039062 MULTI HCD FTMS 0 0 0 24212 478988.03125 0.007879547225132481 30 -0.53936767578125 2 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 71.92227651296345 0.008466197542043549 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 66.34 0 0 5.9628 5.9628 91.002 0 0 0 11.45119965945284 38.01415913489059 11.45119965945284 16.70818753952375 0 1.8539171939081172 1.0457574905606752 0 0.75 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};[HQ]E{I|L}[MT]E{I|L}{I|L};[YT]K[KP]TSA{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{I|L}[DP]Y;[YT]K{I|L}{[NV]|[RG]}SA{[MS]|[{M(Oxidation (M))|F}A]};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]NR{[MS]|[{M(Oxidation (M))|F}A]};[YT]K{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[{I|L}A]N{M(Oxidation (M))|F} 5.9628;4.4611;3.0656;2.6838;1.7736;1.5842;1.4927;1.2024;0.94862;0.27809 +;-;-;-;-;-;-;-;-;- + 1344 NaN NaN 274129.7 NaN 19658 4554 24212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24215 96.141 NaN 690810 35 0 80318 0.261 + 26161 SPMDIFDMF 9 74 559.7304178944435 NaN 0 559.7305297851562 PEAK HCD FTMS 0 0 0 24212 257380.4375 0.5327498047994466 5 -0.093841552734375 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 112.59319219568356 1.8842603961473373E-08 2 ND{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 6 4 56.846 0 0 5.0872 0 0 201.09931127541182 162.05591760806877 363.1552288834806 0 0 0 0 0 2.3807196863200843 0 1.3169015600442577 0 ND{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 5.0872 - 285 + NaN NaN 195913.2 NaN 19659 4554 24212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24216 96.144 NaN 180510 35 0 14287 0.262 + 23820 RRRQRRRFSP 10 67 472.283751677077 1413.8294256314311 3 472.2835388183594 MULTI HCD FTMS 0 0 0 24212 58612.16796875 0.1312747366371416 31 -0.568817138671875 4 Unmodified _RRRQRRRFSP_ ENST00000371953.7_1_10:89623465-89623600:+|nuORF 0.15932191953741626 0.4744603884079788 2 D 1 10 7.4913 0 0 0.52986 0 0 105.07808904550423 1190.6762474902605 1295.7543365357647 0 0 0 0 0 0.28872548999643577 0 0 0 D 0.52986 - 13 + NaN NaN 110987.3 NaN 19660 4554 24212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24217 96.148 NaN 126310 35 0 13839 0.261 + -1 NKMEEMTMR 9 46 601.2534552807002 NaN 0 601.2538452148438 PEAK HCD FTMS 0 0 0 24212 58905.6796875 1 0 0 5 2 Oxidation (M) _NKMEEM(Oxidation (M))TM(Oxidation (M))R_ REV__ENSG00000114209|ENST00000392750|PDCD10;REV__ENST00000481136.1_1_3:167422617-167437945:-|nuORF 1.4819007175156935 0.28806575819904134 2 YY 2 -1 5.5732 0 0 0.46424 0 0 292.01367218073784 579.3402193658811 871.353891546619 0 0 0 0 0 0 0 0 0 YY 0.46424 - 9 + NaN NaN 108477.9 NaN 19661 4554 24212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24218 96.151 NaN 40385 35 0 3566.8 0.261 + 3271 EEDEDEDYY 9 29 603.7010498046875 NaN 0 603.7010498046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _EEDEDEDYY_ REV__ENSG00000050405|ENST00000341247|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-4|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-5|LIMA1 2.0597508629832335 0.2852655770354268 2 E 1 -1 3.0989 0 0 0.25709 0 0 408.03205263496244 665.2814425104124 1073.3134951453749 0 0 0 0 0 0 0 0 0 E 0.25709 + + 2 + NaN NaN 95941 NaN 19662 4554 24212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24220 96.156 NaN 438680 35 0 62522 0.327 + 61 ACFAWLLGCL 10 79 548.7702286916743 1095.5259044501486 2 548.7701416015625 MULTI HCD FTMS 0 0 0 24219 129923.1953125 0.35841820768406346 3 -0.05164337158203125 1 Unmodified _ACFAWLLGCL_ REV__ENSG00000180398|ENST00000319466|MCFD2;REV__ENST00000477791.5_1_2:47134810-47142912:-|nuORF;REV__ENST00000487121.1_1_2:47136034-47168791:-|nuORF 32.116972079565 0.21381478738184487 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVDC(Carbamidomethyl (C)){I|L}{I|L} 10 -1 + 65.239 0 0 5.955 5.955 87.19 0 0 0 13.15552802072581 47.10286850192787 13.15552802072581 8.037727411936899 0 1.5114393726401687 2 0.25 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVDC(Carbamidomethyl (C)){I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GS[Y{M(Oxidation (M))|F}]Y{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVD[CG]{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVD{I|L}GC{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}G{I|L}[TA]DC(Carbamidomethyl (C)){I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}GSVVD{I|L}C(Carbamidomethyl (C)){I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[WR]DC(Carbamidomethyl (C)){I|L}{I|L};AYG{I|L}DVVSA{[DS]|[MA]|[CV]|TT};AYG{I|L}DVVSC(Carbamidomethyl (C)){I|L};AYG{I|L}DVVSGC{I|L} 5.955;5.2213;5.1185;5.0912;4.9659;4.9474;4.6779;4.6412;4.6062;4.5038 -;-;-;-;-;-;-;-;-;- 2539 NaN NaN 149953.8 NaN 19663 4555 24219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24221 96.16 NaN 479650 35 0 70895 0.261 + 27346 SYRPRDSNE 9 69 562.2603334362224 1122.5061139392446 2 562.2604370117188 MULTI HCD FTMS 0 0 0 24219 109980.765625 0.5677776916461826 1 -0.00951385498046875 2 Unmodified _SYRPRDSNE_ ENSG00000116701|ENST00000367535|NCF2;nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-3|NCF2;nc|ENSG00000116701|P19878-4|NCF2 10.073929032068715 0.27331982688540024 2 {[{M(Oxidation (M))|F}C]|[YS]}[RH][W{M(Oxidation (M))|F}]VE 8 5 + 23.473 0 0 2.0911 2.0911 80.021 0 0 0 1.6368904626891378 9.660677999045715 1.6368904626891378 0.5115252244738109 0 0.3807196863200844 0 0.6989700043360187 0 {[{M(Oxidation (M))|F}C]|[YS]}[RH][W{M(Oxidation (M))|F}]VE;{[{M(Oxidation (M))|F}C]|[YS]}{[HG]|PP}V[W{M(Oxidation (M))|F}]VE;{M(Oxidation (M))|F}V[W{M(Oxidation (M))|F}]VEE[PA];{[{M(Oxidation (M))|F}C]|[YS]}[RH][WE]V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{[HG]|PP}V[WE]V{M(Oxidation (M))|F} 2.0911;2.0456;1.904;0.39573;0.35016 -;-;-;-;- 117 NaN NaN 168632 NaN 19664 4555 24219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24223 96.165 NaN 4091100 35 0 808370 0.327 + 27269 SYPNVFLVF 9 90 543.2870087051799 1084.5594644771597 2 543.2872314453125 MULTI HCD FTMS 0 0 0 24222 2470439.25 0.8675717717757793 2 -0.0421295166015625 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 144.35026110057638 1.4798765981150827E-05 2 {[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 9 0 + 88.324 0 0 8.1438 8.1438 94.65 0 0 0 16.478174818886373 61.36931783443302 16.478174818886373 16.237125054200234 0 3.0682503180159344 0 2.004432191740108 0.6505149978319906 + + {[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}V;{[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}V{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}PNV{M(Oxidation (M))|F}V{M(Oxidation (M))|F}{I|L};[{I|L}V]Y[SG]{[WT]|[RM]}{I|L}{M(Oxidation (M))|F};[{I|L}V]Y[WQ]YT{I|L};[{I|L}V]Y[SG]{[WT]|[RM]}{M(Oxidation (M))|F}{I|L};[YV]{I|L}[SG]{[WT]|[RM]}{I|L}{M(Oxidation (M))|F} 8.1438;6.6467;6.5525;5.1448;1.9711;1.5067;0.5633;0.06527 +;-;-;-;-;-;-;- + 812 NaN NaN 673924.5 NaN 19665 4556 24222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24224 96.17 NaN 611800 35 0 54986 0.261 + 6174 FPEIQGFLQL 10 64 596.3243212073567 1190.6340894815132 2 596.3243408203125 MULTI HCD FTMS 0 0 0 24222 407489.46875 1 0 0 2 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 47.7319792270244 0.08603782309361356 2 {I|L}MQG{M(Oxidation (M))|F}{I|L}Q{I|L} 8 4 69.022 0 0 5.797 0 0 242.12613112617345 0 242.12613112617345 0 63.53707851936797 0 0 0 2.2302046884880937 0 0 0 {I|L}MQG{M(Oxidation (M))|F}{I|L}Q{I|L} 5.797 - 136 NaN NaN 197063.4 NaN 19666 4556 24222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24225 96.173 NaN 616300 35 0 159810 0.261 + 34702 YPVEDYLDLF 10 53 637.3026826423402 1272.5908123514803 2 637.3026733398438 MULTI HCD FTMS 0 0 0 24222 130339.34375 0.1573964769017107 -8 0.15830230712890625 3 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 41.8396318013385 0.12944265636084 2 Y{I|L}D{I|L}{M(Oxidation (M))|F} 5 5 50.191 0 0 3.944 0 0 603.2567005841812 0 603.2567005841812 0 30.180606357151518 0 0 0 1.25 0 0.4247425010840047 0 + Y{I|L}D{I|L}{M(Oxidation (M))|F} 3.944 + + 42 NaN NaN 207557.2 NaN 19667 4556 24222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24226 96.177 NaN 84169 35 0 7109.9 0.264 + 5630 FMFTQMVEKL 10 49 425.214564549585 NaN 0 425.2147521972656 PEAK HCD FTMS 0 0 0 24222 43926.9453125 0.4651585422644385 -8 0.15830230712890625 4 Unmodified _FMFTQMVEKL_ nc|ENSG00000254838|Q7Z2Y8|GVINP1 1.4819007175156935 0.33891598740166873 2 T 1 9 0.71334 0 0 0.084079 0 0 350.5797200642107 393.7634371393188 744.3431572035295 0 0 0 0 0 0 0 0 0 + T 0.084079 + + 1 + NaN NaN 116388.8 NaN 19668 4556 24222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24227 96.18 NaN 188640 35 0 31609 0.261 + 15065 LLVCGFLYQF 10 50 601.8153885201672 1201.6162241071343 2 601.8168334960938 MULTI HCD FTMS 0 0 0 24222 26496.423828125 0.574561490442899 2 -0.0421295166015625 5 Unmodified _LLVCGFLYQF_ ENSG00000118017|ENST00000236709|A4GNT 14.838274106304384 0.3723198072575719 2 {I|L}YQ{M(Oxidation (M))|F} 4 6 28.519 0 0 2.3733 0 0 632.3349476544937 0 632.3349476544937 0 24.539106406846045 0 0 0 0.8252574989159953 0 0 0 + {I|L}YQ{M(Oxidation (M))|F} 2.3733 + + 18 NaN NaN 121810.6 NaN 19669 4556 24222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24228 96.183 NaN 177980 35 0 18919 0.262 + 25343 SDRQEEVF 8 50 505.23175388256334 1008.4489548319267 2 505.23150634765625 MULTI HCD FTMS 0 0 0 24222 17831.8828125 0.4969370353219036 -3 0.0525360107421875 6 Unmodified _SDRQEEVF_ REV__CON__P09870 4.3292370932331545 0.5355693454741696 2 SA 2 -1 17.959 0 0 1.7808 0 0 0 847.3447219672604 847.3447219672604 2.4742501084004687 0 0 0 0 0 0 0 0 SA 1.7808 - 8 + NaN NaN 113495.3 NaN 19670 4556 24222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24230 96.188 NaN 553240 35 0 154340 0.327 + 2375 DPFPAAIIL 9 46 478.7762896027608 955.5380262723216 2 478.77618408203125 MULTI HCD FTMS 0 0 0 24229 288413.40625 0.5494652952423047 -7 0.15044403076171875 1 Unmodified _DPFPAAIIL_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 21.74664581756881 0.17247014374749275 2 A{I|L}{I|L}{I|L} 4 5 39.553 0 0 4.1393 0 0 527.2386341779312 0 527.2386341779312 0 37.95880017344075 0 0 0 1 0 0 0 + A{I|L}{I|L}{I|L} 4.1393 + + 43 NaN NaN 196439.4 NaN 19671 4557 24229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24231 96.193 NaN 708020 35 0 75518 0.261 + 14539 LFEQYFII 8 62 536.7893621077224 1071.5641712822446 2 537.7793579101562 MULTI HCD FTMS 0 0 0 24229 13403.033203125 0.3395774867847714 2 -0.0389251708984375 2 Unmodified _LFEQYFII_ REV__ENSG00000104361|ENST00000430223|NIPAL2;REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF;REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 14.581692164780916 0.48650662947107914 2 [Y{I|L}]QD{M(Oxidation (M))|F}Y{I|L} 7 -1 33.773 0 0 3.1517 0 0 0 126.09530959376436 126.09530959376436 16.549471895720984 0 0 0 0 0 1.3010299956639813 0.3807196863200844 0 [Y{I|L}]QD{M(Oxidation (M))|F}Y{I|L} 3.1517 - 627 NaN NaN 210924.7 NaN 19672 4557 24229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24232 96.196 NaN 426260 35 0 131690 0.261 + -1 MGNCPQYNK 9 48 564.2348489366649 1126.4551449401297 2 564.234619140625 MULTI HCD FTMS 0 0 0 24229 34172.109375 0.1723786913969672 5 -0.0836334228515625 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))GNC(Carbamidomethyl (C))PQYNK_ REV__ENSG00000105612|ENST00000222219|DNASE2;REV__ENST00000588777.1_1_19:12986806-12989487:-|nuORF;REV__nc|ENSG00000105612|O00115-2|DNASE2 2.0597508629832335 0.3354026079994024 2 Y 1 -1 6.9897 0 0 0.6205 0 0 131.97448053508896 828.3971095128946 960.3715900479835 0 0 0 0 0 0 0 0 0 Y 0.6205 + + 7 + NaN NaN 154685.3 NaN 19673 4557 24229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24233 96.199 NaN 141970 35 0 20274 0.264 + -1 FECYCCDC 8 43 405.1191011259715 NaN 0 405.1192321777344 PEAK HCD FTMS 0 0 0 24229 17327.193359375 0.4418057900188156 1 -0.01949310302734375 4 4 Carbamidomethyl (C) _FEC(Carbamidomethyl (C))YC(Carbamidomethyl (C))C(Carbamidomethyl (C))DC(Carbamidomethyl (C))_ REV__ENSG00000125386|ENST00000637812|FAM193A;REV__ENSG00000146067|ENST00000514747|FAM193B;REV__ENST00000506955.5_1_5:176959168-176966109:-|nuORF;REV__ENST00000510479.5_1_5:176959168-176964941:-|nuORF;REV__nc|ENSG00000125386|P78312-2|FAM193A;REV__nc|ENSG00000125386|P78312-4|FAM193A;REV__nc|ENSG00000125386|P78312-5|FAM193A;REV__nc|ENSG00000125386|P78312-6|FAM193A;REV__nc|ENSG00000125386|P78312|FAM193A;REV__nc|ENSG00000146067|Q96PV7|FAM193B 0.45834013312273997 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 129898.8 NaN 19674 4557 24229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24234 96.203 NaN 67313 35 0 12095 0.261 + 25655 SHLPGEEH 8 35 453.2099496688864 NaN 0 453.2091369628906 PEAK HCD FTMS 0 0 0 24229 17592.0625 0.38325625631818633 -2 0.0321502685546875 5 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115112.5 NaN 19675 4557 24229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24236 96.208 NaN 1009600 35 0 163780 0.327 + 7788 FYPAIADLF 9 63 528.7738462892487 1055.5331396452973 2 528.7738037109375 MULTI HCD FTMS 0 0 0 24235 234505.640625 0.6092151891294074 -4 0.07440948486328125 1 Unmodified _FYPAIADLF_ ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion 101.72198241140316 0.004218805956062179 2 Q[PA]{I|L}AD{I|L}{M(Oxidation (M))|F} 8 2 72.912 0 0 6.9076 0 0 182.0850938462723 0 182.0850938462723 0 29.943415770716157 0 0 0 2.7302046884880937 0 1.1989700043360187 0 Q[PA]{I|L}AD{I|L}{M(Oxidation (M))|F} 6.9076 - 389 + NaN NaN 261343.5 NaN 19676 4558 24235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24237 96.212 NaN 135430 35 0 5241.7 0.261 + 11730 KDEKRKLERQR 11 62 495.958854098594 1484.854732895982 3 495.958984375 MULTI HCD FTMS 0 0 0 24235 79421.4296875 0.6303969749705077 -5 0.09466552734375 2 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 1.1097533296519684 0.4140536653900533 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 12 NaN NaN 110474.8 NaN 19677 4558 24235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24238 96.216 NaN 265630 35 0 33163 0.261 + 13612 KYPENFFLL 9 82 585.8130938204245 1169.6116347076488 2 585.813720703125 MULTI HCD FTMS 0 0 0 24235 44033.3203125 0.43687601210793464 -3 0.05164337158203125 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 YY{[VA]|[{I|L}G]}A[NP]{M(Oxidation (M))|F}{I|L}{I|L} 10 5 + 36.661 0 0 3.1344 3.1344 80.95 0 0 0 9.665762445130497 8.718553028398688 8.718553028398688 1.7609125905568064 0 0.3807196863200844 2 0 0 YY{[VA]|[{I|L}G]}A[NP]{M(Oxidation (M))|F}{I|L}{I|L};YY[Q{I|L}][NP]{M(Oxidation (M))|F}{I|L}{I|L} 3.1344;2.9839 -;- 317 NaN NaN 138076.1 NaN 19678 4558 24235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24239 96.219 NaN 183600 35 0 16308 0.262 + 2430 DPSTPVHIL 9 49 489.76701146693375 977.5194700006675 2 489.767578125 MULTI HCD FTMS 0 0 0 24235 60997.7109375 0.5394149352936864 -6 0.1243896484375 4 Unmodified _DPSTPVHIL_ ENSG00000163257|ENST00000382247|DCAF16 10.823927491677226 0.26684000660059787 2 {I|L}{I|L} 2 7 25.969 0 0 2.6566 0 0 733.3391335325418 0 733.3391335325418 0 -4.476212463643421 -4.476212463643421 0 0 0.5 0 0 0 + {I|L}{I|L} 2.6566 + + 16 NaN NaN 121934.7 NaN 19679 4558 24235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24240 96.222 NaN 189550 35 0 16514 0.261 + 19936 NYFPGGVALIW 11 52 618.8235819769325 NaN 0 618.8235473632812 PEAK HCD FTMS 0 0 0 24235 11719.8681640625 0.06917459001365468 9 -0.13780975341796875 5 Unmodified _NYFPGGVALIW_ ENSG00000084112|ENST00000326495|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1 27.628801355627647 0.19725092517468332 2 {I|L} 1 10 15.797 0 0 1.2784 0 0 204.0903393006816 915.4330538385374 1119.523393139219 0 0 0 0 0 0.8807196863200843 0 0 0 + {I|L} 1.2784 + + 19 + NaN NaN 120450.4 NaN 19680 4558 24235 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24242 96.227 NaN 666520 35 0 107820 0.327 -1 0 71 554.2779814834943 1106.5414100337885 2 554.7800903320312 MULTI HCD FTMS 0 0 0 24241 216261.671875 0.7916840028860587 7 -0.108978271484375 1 NaN NaN 2 {I|L}V{M(Oxidation (M))|F} 3 -1 28.984 0 0 2.6194 0 0 729.308885642775 0 729.308885642775 0 16.127815773883327 0 0 0 0.8807196863200843 0 0 0 {I|L}V{M(Oxidation (M))|F} 2.6194 - 91 NaN NaN 203187.8 NaN 19681 4559 24241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24243 96.231 NaN 328170 35 0 56616 0.261 + 35910 YYTDFLITL 9 55 574.7972805425874 1147.5800081519747 2 574.7974853515625 MULTI HCD FTMS 0 0 0 24241 343590.46875 0.5791180824355996 3 -0.044708251953125 2 Unmodified _YYTDFLITL_ ENSG00000127990|ENST00000648936|SGCE;ENST00000462731.1_1_7:94229956-94232691:-|nuORF;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE 43.85829265575387 0.04763305254408404 2 {M(Oxidation (M))|F}{I|L}{I|L}T{I|L} 5 4 48.36 0 0 4.2141 0 0 542.2018910138687 0 542.2018910138687 0 20.91251590079672 0 0 0 1.5 0 0.3807196863200844 0 + {M(Oxidation (M))|F}{I|L}{I|L}T{I|L} 4.2141 + + 48 NaN NaN 141400.3 NaN 19682 4559 24241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24244 96.235 NaN 462970 35 0 84176 0.261 -1 SSLVLLLCLTC 11 46 639.8437036275714 1277.6728543219426 2 640.3446044921875 MULTI HCD FTMS 0 0 0 24241 75237.59375 0.2583968681600204 -6 0.11409759521484375 3 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 2 C(Carbamidomethyl (C)) 1 -1 8.9794 0 0 0.70279 0 0 445.31938607372473 669.3089693658811 1114.628355439606 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 0.70279 + + 11 + NaN NaN 163177 NaN 19683 4559 24241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24245 96.238 NaN 126490 35 0 13461 0.261 -1 DAPTICPDCGE 11 52 589.2294449780056 1176.4443370228112 2 589.22802734375 MULTI HCD FTMS 0 0 0 24241 48794.59765625 0.6086160413379302 8 -0.118377685546875 4 Carbamidomethyl (C) _DAPTIC(Carbamidomethyl (C))PDCGE_ ENSG00000143067|ENST00000421812|ZNF697 12.240655878213236 0.35042917576941135 2 D{M(Oxidation (M))|F} 2 -1 19.464 0 0 1.6545 0 0 0 911.3264219740736 911.3264219740736 10.511525224473813 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 1.6545 - 49 + NaN NaN 112517.2 NaN 19684 4559 24241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24246 96.242 NaN 117640 35 0 10433 0.261 + 17736 MDGRIYAILW 10 41 619.3258056640625 NaN 0 619.3258056640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MDGRIYAILW_ REV__ENSG00000157542|ENST00000609713|KCNJ6;REV__KCNJ6|p.S175Lfs*17|1|0.13|ENSG00000157542|chr21:37714634-37714634|A/-|frameshift_variant 4.3292370932331545 0.3364790620948225 2 {I|L}[{I|L}A]V[NP]{M(Oxidation (M))|F} 7 -1 21.03 0 0 1.702 0 0 204.08649394665832 274.08274255924067 478.169236505899 0 0 0 0 0 1.805462187404089 0 0 0 {I|L}[{I|L}A]V[NP]{M(Oxidation (M))|F} 1.702 - 14 + NaN NaN 116472.7 NaN 19685 4559 24241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24248 96.246 NaN 203820 35 0 12465 0.326 + 6824 FPSPFDPLTL 10 55 567.2974062718864 1132.5802596105727 2 567.2977905273438 MULTI HCD FTMS 0 0 0 24247 69854.2578125 0.4029168322703156 -2 0.03875732421875 1 Unmodified _FPSPFDPLTL_ ENSG00000147130|ENST00000314425|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF;nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant 17.11289562659939 0.35104376501799556 2 D[{I|L}P]T{I|L} 5 5 32.218 0 0 2.8447 0 0 575.2734242169937 0 575.2734242169937 0 16.73393743112328 0 0 0 1 0 0 0 + D[{I|L}P]T{I|L} 2.8447 + + 34 NaN NaN 139117.9 NaN 19686 4560 24247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24249 96.251 NaN 193260 35 0 13489 0.261 + -1 FFGIMCHSF 9 52 581.2469084028877 1160.4792638725753 2 581.7495727539062 MULTI HCD FTMS 0 0 0 24247 39441.515625 0.18697475645943495 9 -0.1475372314453125 2 Carbamidomethyl (C),Oxidation (M) _FFGIM(Oxidation (M))C(Carbamidomethyl (C))HSF_ REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF 7.910154910731844 0.2910521888787154 2 {[YD]|[{M(Oxidation (M))|F}M]}P{M(Oxidation (M))|F}V 5 -1 54.437 0 0 4.6909 0 0 0 536.173038685913 536.173038685913 14.998774732165998 0 0 0 0 1.8494850021680094 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}P{M(Oxidation (M))|F}V 4.6909 - 215 NaN NaN 121123.4 NaN 19687 4560 24247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24250 96.254 NaN 98541 35 0 7844.6 0.261 -1 MLDYRRMLM 9 41 622.8013629790217 NaN 0 622.8009033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _MLDYRRMLM(Oxidation (M))_ ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-2|GLG1;nc|ENSG00000090863|Q92896-3|GLG1 6.2057823575117 0.2651744870083793 2 D{M(Oxidation (M))|F}C 3 -1 7.2012 0 0 0.57907 0 0 244.12309841722464 631.3365572565061 875.4596556737308 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F}C 0.57907 - 18 + NaN NaN 104207.4 NaN 19688 4560 24247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24251 96.258 NaN 115360 35 0 14262 0.261 + -1 DYYEWCLE 8 44 589.2294449780056 1176.4443370228112 2 589.2296752929688 MULTI HCD FTMS 0 0 0 24247 38132.0234375 0.47562152917483463 9 -0.1475372314453125 4 Carbamidomethyl (C) _DYYEWC(Carbamidomethyl (C))LE_ REV__ENSG00000196620|ENST00000338206|UGT2B15 5.230669730166228 0.5342319408533849 2 T{I|L}[MT] 4 -1 8.9621 0 0 0.7618 0 0 712.2174521124581 0 712.2174521124581 0 1.9723973828126535 0 0 0 0 0 0 0 T{I|L}[MT] 0.7618 - 27 + NaN NaN 113218.4 NaN 19689 4560 24247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24253 96.262 NaN 842400 35 0 214710 0.327 + 1001 AYFNFPELL 9 74 557.284304073753 1112.554055214306 2 557.2852783203125 MULTI HCD FTMS 0 0 0 24252 244223.765625 0.004017579916808985 37 -0.6889419555664062 1 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 65.23502041540118 0.010630085227462206 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 9 0 + 54.804 0 0 4.9259 4.9259 89.298 0 0 0 0.11316845856768509 31.871987629411294 0.11316845856768509 16.58153150123929 0 1.6861818737241734 0 0 1.110924374808178 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F}[EP]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YC]|[HE]}{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}[EP]{I|L}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YC]|[HE]}{I|L}{[{M(Oxidation (M))|F}D]|MM}{I|L};[YT][{M(Oxidation (M))|F}V]D{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{I|L};[YT]K[KP]T{[SA]|[TG]}A{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{[YC]|[HE]}NRA{M(Oxidation (M))|F};[YT]K{I|L}{[NV]|[RG]}{[SA]|[TG]}A{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}[KP]{[{M(Oxidation (M))|F}D]|MM}{I|L}{I|L};[YT][{M(Oxidation (M))|F}V]S[RD]{I|L}{I|L} 4.9259;3.4355;3.0997;2.7792;2.6048;2.5969;2.2713;2.1028;2.0672;2.0636 +;-;-;-;-;-;-;-;-;- + 1230 NaN NaN 224418 NaN 19690 4561 24252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24254 96.267 NaN 552940 35 0 97104 0.261 + 15694 LPEPYWIVL 9 66 565.3181516482758 1128.6217503633516 2 565.3178100585938 MULTI HCD FTMS 0 0 0 24252 259084.03125 0.0570612296913317 -12 0.232391357421875 2 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 2 W{I|L}V{I|L} 4 5 44.68 0 0 3.9589 0 0 599.2951584887886 0 599.2951584887886 0 26.49288766643714 0 0 0 1.4247425010840047 0 0 0 + W{I|L}V{I|L} 3.9589 + + 64 NaN NaN 166802.8 NaN 19691 4561 24252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24256 96.272 NaN 1203000 35 0 200160 0.327 -1 LSKMMYTSM 9 79 570.2438525726277 NaN 0 570.255859375 PEAK HCD FTMS 0 0 0 24255 44936.984375 0.6514668081667602 1 -0.01912689208984375 1 3 Oxidation (M) _LSKM(Oxidation (M))M(Oxidation (M))YTSM(Oxidation (M))_ ENST00000373299.4_1_9:130428541-130430393:+|nuORF 19.256988751693697 0.19238547928067054 2 ST{M(Oxidation (M))|F}V{M(Oxidation (M))|F}N 6 -1 38.25 0 0 3.3598 0 0 165.05891565170504 275.06650720767817 440.1254228593832 0 0 0 0 0 0 0 0.3252574989159953 1.5356668758921828 ST{M(Oxidation (M))|F}V{M(Oxidation (M))|F}N 3.3598 - 308 + NaN NaN 290920 NaN 19692 4562 24255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24257 96.276 NaN 530980 35 0 46197 0.261 + 26162 SPMDIFDMF 9 72 559.7304178944435 NaN 0 559.73046875 PEAK HCD FTMS 0 0 0 24255 177511.015625 0.3674286975441568 13 -0.20849609375 2 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 81.61307344734483 0.0024617032423498567 2 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 4 6 40.086 0 0 3.5873 0 0 165.07875258613439 427.12863083836186 592.2073834244962 0 0 0 0 0 2.2302046884880937 0 0.6382104921644451 0 {M(Oxidation (M))|F}D{M(Oxidation (M))|F}{I|L} 3.5873 - 276 NaN NaN 187434.1 NaN 19693 4562 24255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24258 96.279 NaN 518000 35 0 91954 0.261 + 34893 YSFMESFPF 9 74 577.7490138822777 NaN 0 577.764892578125 PEAK HCD FTMS 0 0 0 24255 15660.8115234375 0.9340183485340847 1 -0.01912689208984375 3 Unmodified _YSFMESFPF_ ENSG00000186471|ENST00000371431|AKAP14;nc|ENSG00000186471|Q86UN6-2|AKAP14 7.910154910731844 0.25691533546754686 2 V{M(Oxidation (M))|F}TS 4 7 11.759 0 0 1.0194 0 0 554.1888103799866 162.05623804263908 716.2450484226257 0 0 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F}TS 1.0194 - 135 + NaN NaN 192590 NaN 19694 4562 24255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24259 96.283 NaN 150860 35 0 8713.4 0.262 + 22684 QWSRLRRRAGR 11 52 481.28353142384896 1440.828764871747 3 481.28350830078125 MULTI HCD FTMS 0 0 0 24255 120512.6328125 0.2835508171488204 -29 0.5781326293945312 4 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 0.3666738066901352 0.4173125597497531 2 K 1 -1 1.5938 0 0 0.11062 0 0 942.5055664848313 367.1973055475219 1309.7028720323533 0 0 0 0 0 0 0 0 0 K 0.11062 - 4 + NaN NaN 124320.6 NaN 19695 4562 24255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24260 96.286 NaN 144690 35 0 12337 0.261 + 23821 RRRQRRRFSP 10 67 472.283751677077 1413.8294256314311 3 472.28363037109375 MULTI HCD FTMS 0 0 0 24255 50966.265625 0.1141500703551465 39 -0.7325286865234375 5 Unmodified _RRRQRRRFSP_ ENST00000371953.7_1_10:89623465-89623600:+|nuORF 0.15932191953741626 0.4744603884079788 2 Q 1 9 1.2591 0 0 0.089053 0 0 739.4617020980312 543.2999971979124 1282.7616992959436 0 0 0 0 0 0 0 0 0 + Q 0.089053 + + 1 + NaN NaN 109944.7 NaN 19696 4562 24255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24263 96.297 NaN 1810200 35 0 368680 0.327 + 27270 SYPNVFLVF 9 72 543.2870087051799 1084.5594644771597 2 543.2872314453125 MULTI HCD FTMS 0 0 0 24262 1232445.5 0.4328116653959761 10 -0.16628265380859375 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 88.95385435242217 0.004553379958619559 2 {[{M(Oxidation (M))|F}C]|[YS]}[NP]V{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 9 0 + 76.393 0 0 7.0436 7.0436 94.993 0 0 0 14.938871815334949 51.33085333508717 14.938871815334949 52.073259432077556 0 2.9247425010840047 0 1.7302046884880937 0 + + {[{M(Oxidation (M))|F}C]|[YS]}[NP]V{M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F};[{I|L}V]Y[WE][KT]{M(Oxidation (M))|F};[YV]{I|L}[WE][KT]{M(Oxidation (M))|F} 7.0436;2.2423;0.39825 +;-;- + 238 NaN NaN 362449.8 NaN 19697 4564 24262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24264 96.302 NaN 1811600 35 0 441230 0.261 + 34703 YPVEDYLDLF 10 59 637.3026826423402 1272.5908123514803 2 637.3028564453125 MULTI HCD FTMS 0 0 0 24262 828095.6875 1 0 0 2 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 85.64151623876279 0.0013369395341731622 2 EDY{I|L}D{I|L}{M(Oxidation (M))|F} 7 3 65.922 0 0 5.1801 0 0 359.1832752912125 0 359.1832752912125 0 45.63132407306718 0 0 0 2.504432191740108 0 0.4247425010840047 0 + EDY{I|L}D{I|L}{M(Oxidation (M))|F} 5.1801 + + 139 NaN NaN 371064.3 NaN 19698 4564 24262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24265 96.305 NaN 653960 35 0 135770 0.261 + 6175 FPEIQGFLQL 10 53 596.3243212073567 1190.6340894815132 2 596.3246459960938 MULTI HCD FTMS 0 0 0 24262 223184.15625 0.547705335636358 8 -0.14081573486328125 3 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 61.08992128646608 0.03745793995309655 2 {I|L}MQG{M(Oxidation (M))|F}{I|L}Q{I|L} 8 4 67.817 0 0 5.6958 0 0 242.1258259503922 0 242.1258259503922 0 58.084588059846 0 0 0 2.1549471895720984 0 0 0.3807196863200844 {I|L}MQG{M(Oxidation (M))|F}{I|L}Q{I|L} 5.6958 - 165 NaN NaN 207312.3 NaN 19699 4564 24262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24266 96.308 NaN 102310 35 0 7720.7 0.264 + 30192 VHNWEYLGKQ 10 51 425.214564549585 NaN 0 425.2151794433594 PEAK HCD FTMS 0 0 0 24262 94434.3515625 1 0 0 4 Unmodified _VHNWEYLGKQ_ ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H 3.2813086475875832 0.33737594360511275 2 Q 1 9 1.5938 0 0 0.18786 0 0 442.2399068317888 275.0902193658813 717.3301261976701 0 0 0 0 0 0 0 0 0 + Q 0.18786 + + 4 + NaN NaN 112141.8 NaN 19700 4564 24262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24268 96.313 NaN 560040 35 0 143820 0.327 + 2376 DPFPAAIIL 9 45 478.7762896027608 955.5380262723216 2 478.77630615234375 MULTI HCD FTMS 0 0 0 24267 426592.875 0.8127152723509661 1 -0.022674560546875 1 Unmodified _DPFPAAIIL_ ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK 34.10243960390752 0.09241788333544565 2 A{I|L}{I|L}{I|L} 4 5 42.167 0 0 4.4129 0 0 527.2389393537125 0 527.2389393537125 0 33.672137691284405 0 0 0 1.2614393726401687 0 0 0 + A{I|L}{I|L}{I|L} 4.4129 + + 27 NaN NaN 168320.5 NaN 19701 4565 24267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24269 96.318 NaN 174520 35 0 11812 0.261 + 4919 FAIPYAIDVL 10 53 561.315756008673 1120.616959084146 2 561.3160400390625 MULTI HCD FTMS 0 0 0 24267 42479.68359375 0.32860560591279836 8 -0.137908935546875 2 Unmodified _FAIPYAIDVL_ ENSG00000180182|ENST00000324817|MED14 32.30548876998284 0.21217886106551395 2 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}[DV]{I|L} 10 0 + 26.928 0 0 2.403 2.403 87.956 0 0 0 2.6979972125390717 12.948719476111208 2.6979972125390717 26.928119562831583 0 1.3494850021680094 0 0 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}A{I|L}[DV]{I|L} 2.403 + + 58 NaN NaN 111004.6 NaN 19702 4565 24267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24270 96.321 NaN 177690 35 0 12981 0.261 + 4609 EYLSYLLNF 9 64 581.2950779185652 NaN 0 581.294677734375 PEAK HCD FTMS 0 0 0 24267 57539.96484375 0.7003586845254538 4 -0.08055877685546875 3 Unmodified _EYLSYLLNF_ ENSG00000172197|ENST00000324607|MBOAT1;nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 45.69961567697781 0.05999643521280087 2 V{[{M(Oxidation (M))|F}D]|MM}Y{I|L}{I|L}N 7 5 41.573 0 0 3.5821 0 0 131.05812360424494 162.0555361383422 293.1136597425872 0 0 0 0 0 1.610924374808178 0 0.6747425010840047 0 V{[{M(Oxidation (M))|F}D]|MM}Y{I|L}{I|L}N 3.5821 - 455 + NaN NaN 117315.3 NaN 19703 4565 24267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24271 96.325 NaN 112100 35 0 7004.2 0.261 + 23389 RKYRTIIF 8 44 548.8362376085666 NaN 0 548.7700805664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RKYRTIIF_ REV__ENSG00000105983|ENST00000353442|LMBR1;REV__nc|ENSG00000105983|Q8WVP7-2|LMBR1;REV__nc|ENSG00000105983|Q8WVP7-3|LMBR1 0.7936320650641473 0.38822285293237185 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 8.6721 0 0 0.7915 0 0 166.08146365010504 519.3294193559298 685.4108830060347 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.7915 - 10 + NaN NaN 101596.5 NaN 19704 4565 24267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24272 96.328 NaN 106460 35 0 8719.8 0.261 + 9513 HQDRLDFLK 9 45 586.3150101796007 NaN 0 586.3146362304688 PEAK HCD FTMS 0 0 0 24267 53217.81640625 0.9758254765971114 1 -0.022674560546875 5 Unmodified _HQDRLDFLK_ REV__ENSG00000111344|ENST00000548055|RASAL1;REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF;REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF;REV__ENST00000548972.5_1_12:113545343-113573291:-|nuORF;REV__nc|ENSG00000111344|O95294-2|RASAL1;REV__nc|ENSG00000111344|O95294-3|RASAL1;REV__nc|ENSG00000111344|O95294|RASAL1 6.723162845929126 0.26266733336404485 2 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.93704 0 0 132.10049829959445 775.3425997369749 907.4430980365694 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93704 - 23 + NaN NaN 108254.3 NaN 19705 4565 24267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24273 96.331 NaN 109910 35 0 9485.9 0.264 + 23734 RRCGLGPSYYH 11 44 436.8798677828303 1307.617773948691 3 437.2138366699219 MULTI HCD FTMS 0 0 0 24267 39204.125 0.7239705467785864 -4 0.05095672607421875 6 Unmodified _RRCGLGPSYYH_ REV__ENST00000370082.1_1_20:62201547-62204491:-|nuORF;REV__nc|ENSG00000130589|Q9BYK8|HELZ2 1.3296431237094175 0.4130893034510334 2 {M(Oxidation (M))|F}[RP] 3 -1 8.072 0 0 0.6173 0 0 889.4177445070878 0 889.4177445070878 0 8.071968632008437 0 0 0 0 0 0 0 {M(Oxidation (M))|F}[RP] 0.6173 - 5 + NaN NaN 105896.9 NaN 19706 4565 24267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24275 96.336 NaN 933540 35 0 233520 0.327 + 10978 IYDYAIVLF 9 63 558.8023892248838 1115.5902255165674 2 558.8025512695312 MULTI HCD FTMS 0 0 0 24274 198192.21875 0.4511491509677566 -3 0.04514312744140625 1 Unmodified _IYDYAIVLF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 36.04419817259434 0.08350412372117409 2 {I|L}V{I|L}{M(Oxidation (M))|F} 4 5 47.607 0 0 4.2674 0 0 625.2738848952815 0 625.2738848952815 0 29.982653242032452 0 0 0 1.805462187404089 0 0 0 + {I|L}V{I|L}{M(Oxidation (M))|F} 4.2674 + + 283 NaN NaN 234352.2 NaN 19707 4566 24274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24276 96.34 NaN 112990 35 0 11208 0.261 + 5037 FDKKERKIRQR 11 56 501.9689781173289 NaN 0 501.9694519042969 PEAK HCD FTMS 0 0 0 24274 18476.56640625 0.22035337032970914 1 -0.0093994140625 2 Unmodified _FDKKERKIRQR_ REV__ENSG00000169981|ENST00000396056|ZNF35 0.4545168274142398 0.3408308101233591 2 W 1 -1 4.6041 0 0 0.45953 0 0 537.7182774243079 275.1131685846313 812.8314460089391 0 0 0 0 0 0 0 0 0 W 0.45953 - 1 + NaN NaN 103558.9 NaN 19708 4566 24274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24278 96.345 NaN 555550 35 0 74205 0.327 + 7789 FYPAIADLF 9 61 528.7738462892487 1055.5331396452973 2 528.7737426757812 MULTI HCD FTMS 0 0 0 24277 147252.875 0.38254383926068514 5 -0.093231201171875 1 Unmodified _FYPAIADLF_ ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion 67.34385681178166 0.00994769994983633 2 {I|L}AD{I|L}{M(Oxidation (M))|F} 5 4 65.846 0 0 6.2382 0 0 478.22239943245955 0 478.22239943245955 0 39.815286267955926 0 0 0 2.2887254899964358 0 0.6505149978319906 0 + {I|L}AD{I|L}{M(Oxidation (M))|F} 6.2382 + + 224 + NaN NaN 174061.9 NaN 19709 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24279 96.35 NaN 362470 35 0 43069 0.261 + 31331 VWTYSYLVL 9 56 572.3081937948516 1142.6018346565031 2 572.3082275390625 MULTI HCD FTMS 0 0 0 24277 72755.8359375 0.2669642578667873 -7 0.09905242919921875 2 Unmodified _VWTYSYLVL_ ENSG00000117479|ENST00000236137|SLC19A2;ENSG00000135917|ENST00000644224|SLC19A3 21.74664581756881 0.17247014374749275 2 {I|L}V{I|L} 3 6 34.693 0 0 3.0363 0 0 799.3560745534484 0 799.3560745534484 0 27.703037561203843 0 0 0 0.8494850021680094 0 0 0 + {I|L}V{I|L} 3.0363 + + 33 NaN NaN 143666.1 NaN 19710 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24280 96.353 NaN 414860 35 0 74838 0.261 -1 0 60 576.3091174653091 1150.603681997418 2 576.3093872070312 MULTI HCD FTMS 0 0 0 24277 209706.578125 0.3320507986554898 -2 0.032073974609375 3 NaN NaN 2 {I|L}PE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L} 7 -1 63.39 0 0 5.5093 0 0 0 249.12153040103752 249.12153040103752 51.6684977723439 0 0 0 0 1.7416440611282624 1.3010299956639813 0.4247425010840047 0 {I|L}PE{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L} 5.5093 - 170 + NaN NaN 154411.7 NaN 19711 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24281 96.356 NaN 395320 35 0 86294 0.261 -1 IMPTIFNLI 9 68 539.3044025573494 1076.5942521814986 2 539.3048095703125 MULTI HCD FTMS 0 0 0 24277 130631.46875 0.7020666525532505 6 -0.1058349609375 4 Oxidation (M) _IM(Oxidation (M))PTIFNLI_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 29.081581746732265 0.1154664336125038 2 {M(Oxidation (M))|F}N{I|L}{I|L} 4 -1 45.745 0 0 4.2491 0 0 571.3032824608018 0 571.3032824608018 0 34.28452496502313 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}N{I|L}{I|L} 4.2491 + + 139 NaN NaN 152392 NaN 19712 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24282 96.36 NaN 152970 35 0 7645.9 0.261 + 11731 KDEKRKLERQR 11 61 495.958854098594 1484.854732895982 3 495.9583740234375 MULTI HCD FTMS 0 0 0 24277 68408.4296875 0.5429827605366057 4 -0.083770751953125 5 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 1.3296431237094175 0.4130893034510334 2 K 1 10 0.48455 0 0 0.032633 0 0 1026.582285241488 327.14316736392817 1353.7254526054162 0 0 0 0 0 0 0 0 0 + K 0.032633 + + 2 + NaN NaN 135366.3 NaN 19713 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24283 96.363 NaN 194750 35 0 32171 0.261 -1 0 53 554.2779814834943 1106.5414100337885 2 554.2780151367188 MULTI HCD FTMS 0 0 0 24277 128307.203125 0.26300739269611256 13 -0.2356414794921875 6 NaN NaN 2 EV{M(Oxidation (M))|F} 3 -1 24.425 0 0 2.2073 0 0 713.3397083966812 0 713.3397083966812 0 9.274400170273577 0 0 0 0.4247425010840047 0 0 0 EV{M(Oxidation (M))|F} 2.2073 - 23 NaN NaN 135229.2 NaN 19714 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24284 96.366 NaN 146460 35 0 10552 0.261 + 2431 DPSTPVHIL 9 41 489.76701146693375 977.5194700006675 2 489.7670593261719 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _DPSTPVHIL_ ENSG00000163257|ENST00000382247|DCAF16 14.838274106304384 0.23215694253501695 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L} 6 6 30.718 0 0 3.1425 0 0 212.07901198554845 0 212.07901198554845 0 11.254471812167779 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{I|L} 3.1425 - 22 NaN NaN 112486 NaN 19715 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24285 96.37 NaN 151960 35 0 14094 0.261 + 13613 KYPENFFLL 9 51 585.8130938204245 1169.6116347076488 2 585.8128051757812 MULTI HCD FTMS 0 0 0 24277 63862.80859375 0.6336140209833248 5 -0.093231201171875 8 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3661976544937 0 778.3661976544937 0 17.21848749616356 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 14 NaN NaN 113647 NaN 19716 4567 24277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24287 96.375 NaN 730700 35 0 138510 0.326 -1 SSLVLLLCLTC 11 51 639.8437036275714 1277.6728543219426 2 640.3449096679688 MULTI HCD FTMS 0 0 0 24286 171039.015625 0.5874183871101379 3 -0.05466461181640625 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 2 M 1 -1 8.2268 0 0 0.64389 0 0 463.32887346432386 680.2781409504539 1143.6070144147777 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.64389 - 9 + NaN NaN 203556.4 NaN 19717 4568 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24288 96.379 NaN 300980 35 0 40965 0.261 + 25181 SANFSGRMPCI 11 49 591.7738922329384 1181.5332315326766 2 591.7740478515625 MULTI HCD FTMS 0 0 0 24286 78594.09375 0.3193406653544764 -5 0.083648681640625 2 Unmodified _SANFSGRMPCI_ ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L 4.189502756095605 0.4005469306127019 2 SA 2 9 16.198 0 0 1.3709 0 0 0 1020.4284421125175 1020.4284421125175 6.2763625255165305 0 0 0 0 0 0 0 0 + SA 1.3709 + + 11 + NaN NaN 157726.8 NaN 19718 4568 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24289 96.382 NaN 604950 35 0 216250 0.262 + 10855 IVLSSFFW 8 53 499.77093260050503 997.5273122678101 2 499.7709045410156 MULTI HCD FTMS 0 0 0 24286 54830.109375 0.5360064458972322 -7 0.1121368408203125 3 Unmodified _IVLSSFFW_ ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;nc|ENSG00000101194|Q9BYT1-3|SLC17A9 5.230669730166228 0.5342319408533849 2 V{I|L} 2 6 20.969 0 0 2.1021 0 0 0 782.3517182571294 782.3517182571294 4.771212547196626 0 0 0 0 0 0 0 0 + V{I|L} 2.1021 + + 15 + NaN NaN 186206.2 NaN 19719 4568 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24290 96.386 NaN 327730 35 0 33204 0.261 + 15475 LPDLVVEIL 9 56 505.8100266071 1009.605500281 2 505.81005859375 MULTI HCD FTMS 0 0 0 24286 68366.9765625 0.1877995498977497 -10 0.1669158935546875 4 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 30.636539890814138 0.10832830463492794 2 VE{I|L}{I|L} 4 5 46.186 0 0 4.5746 0 0 537.3152514901005 0 537.3152514901005 0 29.195925227640984 0 0 0 1.4247425010840047 0 0 0 + VE{I|L}{I|L} 4.5746 + + 21 NaN NaN 136721.8 NaN 19720 4568 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24291 96.389 NaN 182300 35 0 17660 0.261 -1 0 63 486.95896564295595 1457.8550675290678 3 486.9587707519531 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 136492 NaN 19721 4568 24286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24293 96.394 NaN 4491100 35 0 848100 0.327 + 15695 LPEPYWIVL 9 79 565.3181516482758 1128.6217503633516 2 565.318359375 MULTI HCD FTMS 0 0 0 24292 4448120.5 0.9796637188353198 -4 0.08055877685546875 1 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 42.09456458481378 0.05572955244001856 2 [{I|L}V]{I|L}[C(Carbamidomethyl (C))N]{[DA]|[EG]}{I|L}V{I|L} 10 6 + 52.949 0 0 4.6915 4.6915 83.487 0 0 0 3.8143747289988283 0.28028723600243666 0.28028723600243666 3.8143747289988283 0 1.5 1.5228787452803376 0.3054621874040891 0 [{I|L}V]{I|L}[C(Carbamidomethyl (C))N]{[DA]|[EG]}{I|L}V{I|L};[EP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L};EP{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L};[{I|L}V]{I|L}{[DA]|[EG]}[C(Carbamidomethyl (C))N]{I|L}V{I|L};[{I|L}V]{I|L}[C(Carbamidomethyl (C))N]{[VA]|[{I|L}G]}EV{I|L};[{I|L}V]{I|L}[C(Carbamidomethyl (C))N]{[DA]|[EG]}V{I|L}{I|L};[EP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}WV{I|L}{I|L};[{I|L}V]{I|L}{[DA]|[EG]}[C(Carbamidomethyl (C))N]V{I|L}{I|L};[{I|L}V]{I|L}[C(Carbamidomethyl (C))N]{[VA]|[{I|L}G]}D{I|L}{I|L};[EP]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V]W{I|L} 4.6915;4.3535;4.2563;4.2485;3.6292;3.3585;3.0205;2.9155;2.2962;1.0534 -;-;-;-;-;-;-;-;-;- 445 NaN NaN 778037.2 NaN 19722 4569 24292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24294 96.398 NaN 262950 35 0 40213 0.261 + 2447 DPYFTPIPVL 10 67 581.3130287682401 1160.61150460328 2 581.3139038085938 MULTI HCD FTMS 0 0 0 24292 77487.0546875 0.5051810077661126 -6 0.10302734375 2 Unmodified _DPYFTPIPVL_ ENSG00000103599|ENST00000335894|IQCH 19.256988751693697 0.33098864134661865 2 {I|L}{I|L}Y{[{M(Oxidation (M))|F}D]|MM}V{I|L} 7 6 41.955 0 0 3.6149 0 0 279.121385642775 0 279.121385642775 0 31.497519816658368 0 0 0 0.5 0 0.8494850021680094 0 {I|L}{I|L}Y{[{M(Oxidation (M))|F}D]|MM}V{I|L} 3.6149 - 413 NaN NaN 132260.3 NaN 19723 4569 24292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24296 96.403 NaN 213210 35 0 11599 0.327 -1 0 65 481.28353142384896 1440.828764871747 3 481.2835998535156 MULTI HCD FTMS 0 0 0 24295 96503.0390625 0.22705931274516283 -21 0.37335968017578125 1 NaN NaN 2 V 1 -1 8.0989 0 0 0.5621 0 0 1026.5822571586593 312.1499117486938 1338.732168907353 0 0 0 0 0 0.5 0 0 0 V 0.5621 - 5 + NaN NaN 113400.4 NaN 19724 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24297 96.408 NaN 406720 35 0 82880 0.261 + 941 AYEDWFITL 9 67 579.279349102131 1156.544145271062 2 579.279296875 MULTI HCD FTMS 0 0 0 24295 98435.3515625 0.5732525357196446 -4 0.0673370361328125 2 Unmodified _AYEDWFITL_ ENSG00000081923|ENST00000648908|ATP8B1 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F}{I|L}[{I|L}T] 4 5 35.688 0 0 3.0857 0 0 664.2499829363833 0 664.2499829363833 0 17.32516286606369 0 0 0 1.5 0 0.75 0 + {M(Oxidation (M))|F}{I|L}[{I|L}T] 3.0857 + + 63 + NaN NaN 171027.3 NaN 19725 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24298 96.411 NaN 102120 35 0 46598 0.264 -1 0 41 409.20160786797777 408.1943314013778 1 409.2015380859375 MULTI HCD FTMS 0 0 0 24295 106808.5625 0.5701275669926672 -20 0.36568450927734375 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 3.5777 0 0 243.11562459161058 0 243.11562459161058 0 14.604093769761874 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 3.5777 - 2 + NaN NaN 134526 NaN 19726 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24299 96.414 NaN 267850 35 0 47858 0.261 + 14824 LITDILDTF 9 44 525.7894750196521 1049.564397106104 2 525.7893676757812 MULTI HCD FTMS 0 0 0 24295 87316.5390625 0.13525022457565875 -13 0.215240478515625 4 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 61.357469665136826 0.01568246967499496 2 {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}DT{M(Oxidation (M))|F} 9 0 {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L} + + 55.222 7.4473 1.3411 5.2614 5.2614 62.702 0 0 0 0 43.53917193908117 0 0 0 2 0 0.805462187404089 0 + + {I|L}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}DT{M(Oxidation (M))|F} 5.2614 + + 85 + NaN NaN 139962.3 NaN 19727 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24300 96.418 NaN 341230 35 0 52095 0.261 + 15679 LPELQLICL 9 71 521.3043620059841 NaN 0 521.304443359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LPELQLICL_ ENSG00000198860|ENST00000645668|TSEN15;ENST00000457455.1_1_1:184023496-184023998:+|nuORF;nc|ENSG00000198860|Q8WW01-2|TSEN15 12.240655878213236 0.2359303321180293 2 C{I|L}{I|L} 3 7 19.737 0 0 1.8967 0 0 131.0940785939095 577.2987764947874 708.3928550886969 0 0 0 0 0 0.805462187404089 0 0 0 C{I|L}{I|L} 1.8967 - 112 + NaN NaN 153862.9 NaN 19728 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24301 96.421 NaN 147120 35 0 15385 0.261 + -1 CDFCFLVLFFC 11 53 509.8856703862102 NaN 0 509.8864440917969 PEAK HCD FTMS 0 0 0 24295 49708.14453125 0.6911758938890339 -4 0.0673370361328125 6 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))DFC(Carbamidomethyl (C))FLVLFFC(Carbamidomethyl (C))_ REV__ENST00000349824.8_1_7:50471484-50471613:+|nuORF 0.09484139111097674 0.34185110575506755 2 {I|L}{I|L}{I|L}{I|L} 4 -1 21.605 0 0 2.1228 0 0 338.26955746988295 224.12908350162346 562.3986409715064 0 0 0 0 0 1.860924374808178 0 0 0 {I|L}{I|L}{I|L}{I|L} 2.1228 - 33 + NaN NaN 112836.2 NaN 19729 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24302 96.424 NaN 62828 35 0 4163 0.261 + 32577 WKCFLAVPDP 10 38 588.3024476114523 NaN 0 587.8409423828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _WKCFLAVPDP_ nc|ENSG00000236790|Q6ZSB3|LINC00299 6.2057823575117 0.3348729994311477 2 C(Carbamidomethyl (C)) 1 9 5.4846 0 0 0.46693 0 0 380.2047964906795 631.3397310846311 1011.5445275753107 0 0 0 0 0 0 0 0 0 + C(Carbamidomethyl (C)) 0.46693 + + 5 + NaN NaN 105363.2 NaN 19730 4570 24295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24304 96.429 NaN 222890 35 0 27694 0.327 + 22015 QFRIKLFWFI 10 56 466.6081157643612 1396.8025178932835 3 466.6077575683594 MULTI HCD FTMS 0 0 0 24303 49606.67578125 0.08370626393158946 46 -0.9242172241210938 1 Unmodified _QFRIKLFWFI_ REV__ENST00000005257.6_1_7:39746581-39746692:+|nuORF 1.9063754702782614 0.46521295622613185 2 E 1 -1 8.5392 0 0 0.61134 0 0 91.0739545161335 1173.6479275994263 1264.7218821155598 0 0 0 0 0 0.3054621874040891 0 0 0 E 0.61134 - 8 + NaN NaN 139453.8 NaN 19731 4571 24303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24305 96.434 NaN 141140 35 0 12636 0.261 + 22411 QPTKRSRA 8 64 472.27508821230526 NaN 0 472.2834167480469 PEAK HCD FTMS 0 0 0 24303 17950.419921875 0.31959106070078186 -9 0.157440185546875 2 Unmodified _QPTKRSRA_ REV__ENSG00000041802|ENST00000265245|LSG1;REV__LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant 4.3292370932331545 0.38822285293237185 2 A 1 -1 3.9794 0 0 0.4222 0 0 547.3904341376981 321.0822847955688 868.4727189332668 0 0 0 0 0 0 0 0 0 A 0.4222 + + 5 + NaN NaN 127391 NaN 19732 4571 24303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24307 96.439 NaN 584820 35 0 97153 0.327 + 27271 SYPNVFLVF 9 69 543.2870087051799 1084.5594644771597 2 543.2875366210938 MULTI HCD FTMS 0 0 0 24306 230738.765625 0.08103111206261701 18 -0.3538665771484375 1 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 56.17704186161178 0.022929533404884107 2 {M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 4 5 51.186 0 0 4.7195 0 0 560.2587803557248 0 560.2587803557248 0 29.25750570816959 0 0 0 1.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 4.7195 + + 264 NaN NaN 179692.8 NaN 19733 4572 24306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24308 96.443 NaN 414200 35 0 108560 0.261 + 11295 IYLTFPVAMF 10 57 609.3176593529477 1216.6207657726952 2 609.3187866210938 MULTI HCD FTMS 0 0 0 24306 136587.375 0.09122177262925232 -11 0.17626190185546875 2 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 133.70201269244603 1.2298199566238236E-05 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 118.33 0 0 9.7258 9.7258 98.747 0 0 0 21.8740810491245 105.44531259372398 21.8740810491245 56.86426927290974 0 2.8494850021680094 1.6989700043360187 1.9476212463643423 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9.7258;5.0518;4.2216 +;-;- + 211 NaN NaN 147034.8 NaN 19734 4572 24306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24309 96.446 NaN 171870 35 0 16531 0.261 + 29316 TYNIFAITF 9 45 545.2843302665717 1088.5541075999433 2 545.2849731445312 MULTI HCD FTMS 0 0 0 24306 114478.0703125 0.10875141130799099 28 -0.5429840087890625 3 Unmodified _TYNIFAITF_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 40.23920728925047 0.06424668180817725 2 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 9 2 + 68.918 0 0 6.3312 6.3312 94.146 0 0 0 8.969771685254386 67.32447808893326 8.969771685254386 68.91827190205532 0 2.1989700043360187 0 0.3807196863200844 0.4247425010840047 [{I|L}T][YN]{M(Oxidation (M))|F}A{I|L}T{M(Oxidation (M))|F} 6.3312 - 164 NaN NaN 120365.2 NaN 19735 4572 24306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24311 96.451 NaN 581510 35 0 168440 0.327 + 34704 YPVEDYLDLF 10 43 637.3026826423402 1272.5908123514803 2 637.302490234375 MULTI HCD FTMS 0 0 0 24310 141591.84375 0.17098488240829052 9 -0.1788482666015625 1 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 18.1463463914782 0.3413772152514074 2 {I|L}D{I|L}{M(Oxidation (M))|F} 4 6 41.938 0 0 3.2955 0 0 766.3158154370791 0 766.3158154370791 0 37.33410649039925 0 0 0 1 0 0 0 + {I|L}D{I|L}{M(Oxidation (M))|F} 3.2955 + + 22 NaN NaN 178900.8 NaN 19736 4573 24310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24312 96.456 NaN 880870 35 0 185120 0.264 + 29918 VFDVALLDL 9 61 502.78686784590974 1003.5591827586195 2 502.78704833984375 MULTI HCD FTMS 0 0 0 24310 270982.75 0.7627049427253221 -4 0.05735015869140625 2 Unmodified _VFDVALLDL_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 60.07390631473393 0.0174780869009295 2 {I|L}{I|L}AVDD{I|L} 7 6 56.178 0 0 5.5979 0 0 246.12124831367345 0 246.12124831367345 0 31.072004516569933 0 0 0 1.6237125054200234 0 0 0 {I|L}{I|L}AVDD{I|L} 5.5979 - 124 NaN NaN 234783.8 NaN 19737 4573 24310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24313 96.459 NaN 184180 35 0 38004 0.261 + 1593 AYVKSYLL 8 44 478.7762896027608 955.5380262723216 2 478.7763671875 MULTI HCD FTMS 0 0 0 24310 79006.28125 0.15051730853106907 9 -0.1788482666015625 3 Unmodified _AYVKSYLL_ ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5 12.531546534597751 0.5015908124873912 2 {I|L}{I|L}{I|L} 3 6 31.198 0 0 3.265 0 0 598.2751332013687 0 598.2751332013687 0 7.016675202793721 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 3.265 - 28 NaN NaN 134494.6 NaN 19738 4573 24310 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24315 96.464 NaN 341170 35 0 78394 0.327 + 10979 IYDYAIVLF 9 47 558.8023892248838 1115.5902255165674 2 558.802490234375 MULTI HCD FTMS 0 0 0 24314 165220.625 0.3760952128253628 5 -0.10076904296875 1 Unmodified _IYDYAIVLF_ ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 28.486842064014134 0.11819662193267319 2 {I|L}V{I|L}{M(Oxidation (M))|F} 4 5 48.488 0 0 4.3464 0 0 625.27543837715 0 625.27543837715 0 40.283190067533994 0 0 0 1.805462187404089 0 0 0 + {I|L}V{I|L}{M(Oxidation (M))|F} 4.3464 + + 74 NaN NaN 146330.5 NaN 19739 4574 24314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24316 96.469 NaN 204670 35 0 45083 0.261 + 20947 PLEDAFILCF 10 56 584.2911491298037 1166.5677453264072 2 584.2923583984375 MULTI HCD FTMS 0 0 0 24314 63276.3046875 0.8664633848887245 5 -0.10076904296875 2 Unmodified _PLEDAFILCF_ REV__ENSG00000205126|ENST00000378832|ACCSL;REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF 9.38312468134398 0.42334543440173333 2 {I|L}{I|L} 2 -1 19.464 0 0 1.6685 0 0 0 937.3757488647173 937.3757488647173 4.286662482156345 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.6685 + + 8 + NaN NaN 136377.2 NaN 19740 4574 24314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24317 96.472 NaN 70779 35 0 11964 0.262 + 14789 LIITYVPY 8 48 491.286619410563 980.558685887926 2 491.2867126464844 MULTI HCD FTMS 0 0 0 24314 37307.5234375 1 0 0 3 Unmodified _LIITYVPY_ ENSG00000197147|ENST00000330947|LRRC8B 2.8892196856762586 0.5377058178582064 2 S 1 8 5.4846 0 0 0.55933 0 0 182.35935835061974 708.1467379205686 890.5060962711884 0 0 0 0 0 0 0 0 0 S 0.55933 - 8 + NaN NaN 125917.7 NaN 19741 4574 24314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24318 96.475 NaN 131980 35 0 10464 0.261 + 4920 FAIPYAIDVL 10 56 561.3163848643193 NaN 0 561.3159790039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FAIPYAIDVL_ ENSG00000180182|ENST00000324817|MED14 10.823927491677226 0.33092050725491123 2 {I|L} 1 9 8.8515 0 0 0.78988 0 0 345.19067797911185 659.3198946588499 1004.5105726379618 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.78988 + + 12 + NaN NaN 128711.2 NaN 19742 4574 24314 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24320 96.48 NaN 973320 35 0 185330 0.327 + 10002 IEPRQRLHC 9 78 576.3091174653091 1150.603681997418 2 576.3094482421875 MULTI HCD FTMS 0 0 0 24319 484039.75 0.7664317781805569 6 -0.126983642578125 1 Unmodified _IEPRQRLHC_ REV__ENST00000403150.5_1_7:1577170-1577704:+|nuORF 26.88365393820708 0.12808753336095696 2 {I|L}PEPYW{I|L} 7 -1 82.045 0 0 7.1306 0 0 0 249.12191187076408 249.12191187076408 53.763647917770214 0 0 0 0 1.9361818737241734 1.3979400086720375 0.4247425010840047 0 {I|L}PEPYW{I|L} 7.1306 - 849 + NaN NaN 242033.5 NaN 19743 4575 24319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24321 96.485 NaN 535490 35 0 94567 0.261 + 17649 LYYQMTIVL 9 66 572.3081937948516 1142.6018346565031 2 572.3079223632812 MULTI HCD FTMS 0 0 0 24319 261414.890625 0.95921421796296 1 -0.01611328125 2 Unmodified _LYYQMTIVL_ REV__SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant 22.736283301280096 0.1639198954644489 2 W{I|L}V{I|L} 4 -1 40.988 0 0 3.5872 0 0 613.2758045880875 0 613.2758045880875 0 33.99797211252192 0 0 0 1.2059771852360797 0 0 0 W{I|L}V{I|L} 3.5872 - 69 NaN NaN 165410.6 NaN 19744 4575 24319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24322 96.488 NaN 355900 35 0 76786 0.261 -1 PYRSCDLF 8 50 529.2423928585112 1056.4702327838222 2 529.2425537109375 MULTI HCD FTMS 0 0 0 24319 79566.0390625 0.5949249156837757 -3 0.041595458984375 3 Carbamidomethyl (C) _PYRSC(Carbamidomethyl (C))DLF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 10.183394434864962 0.5188676124868831 2 AD{I|L}{M(Oxidation (M))|F} 4 -1 35.31 0 0 3.3423 0 0 592.2439754467363 0 592.2439754467363 0 20.82916061130112 0 0 0 0 0 0.6382104921644451 0 AD{I|L}{M(Oxidation (M))|F} 3.3423 - 126 + NaN NaN 149096.2 NaN 19745 4575 24319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24323 96.492 NaN 329020 35 0 99921 0.261 -1 0 40 595.2714296341508 594.2641531675507 1 595.2711181640625 MULTI HCD FTMS 0 0 0 24319 78234.1875 1 0 0 4 NaN NaN 2 {I|L} 1 -1 1.1092 0 0 0.18666 0 0 59.050360298213214 419.1189364068969 478.1692967051101 0 0 0 0 0 0 0 0 0 {I|L} 0.18666 - 1 + NaN NaN 152513.8 NaN 19746 4575 24319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24325 96.496 NaN 121350 35 0 6879.4 0.327 + 11732 KDEKRKLERQR 11 49 495.958854098594 1484.854732895982 3 495.95904541015625 MULTI HCD FTMS 0 0 0 24324 97290.4296875 0.7722297723662579 13 -0.28003692626953125 1 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118497.3 NaN 19747 4576 24324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24326 96.501 NaN 166290 35 0 26253 0.261 + 6176 FPEIQGFLQL 10 56 596.3243212073567 1190.6340894815132 2 596.324462890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FPEIQGFLQL_ ENSG00000141738|ENST00000309156|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-4|GRB7 16.565877749689598 0.3561603856738253 2 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 3 8 13.71 0 0 1.1515 0 0 0 815.3729277246534 815.3729277246534 4.418402966525578 0 0 0 0 0.3252574989159953 0 0 0 {[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L} 1.1515 - 15 + NaN NaN 118496 NaN 19748 4576 24324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24327 96.504 NaN 74048 35 0 10038 0.261 + 33923 YLQLTNMPFI 10 37 620.3237558127058 1238.6329586922116 2 620.30712890625 MULTI HCD FTMS 0 0 0 24324 7894.6875 0.5266289230684243 -1 0.01611328125 3 Unmodified _YLQLTNMPFI_ ENSG00000006634|ENST00000265728|DBF4;ENST00000412976.1_1_10:65929632-65930097:-|nuORF 7.289230182591677 0.43672065049472153 2 [Y{I|L}]{I|L}Q 4 7 26.911 0 0 2.1727 0 0 0 718.3218374366053 718.3218374366053 15.94212497064703 0 0 0 0 0 2 0 0 [Y{I|L}]{I|L}Q 2.1727 - 15 NaN NaN 102385.4 NaN 19749 4576 24324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24329 96.509 NaN 579560 35 0 76163 0.327 + -1 SAVCWMGVTR 10 67 591.7738922329384 1181.5332315326766 2 591.7740478515625 MULTI HCD FTMS 0 0 0 24328 186065.71875 0.7560154661785115 4 -0.09803009033203125 1 Carbamidomethyl (C),Oxidation (M) _SAVC(Carbamidomethyl (C))WM(Oxidation (M))GVTR_ REV__ENST00000436521.1_3_6:35410881-35414311:+|nuORF 4.5288652416199255 0.4513317009562028 2 SAV 3 -1 19.922 0 0 1.6861 0 0 0 921.3583912652917 921.3583912652917 4.955678082598926 0 0 0 0 0 0 0 0 SAV 1.6861 + + 61 + NaN NaN 181724.6 NaN 19750 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24330 96.514 NaN 363730 35 0 29576 0.261 + -1 IDECFRQL 8 80 540.7613880965428 1079.5082232598854 2 541.2637939453125 MULTI HCD FTMS 0 0 0 24328 86355.2109375 0.3888916644190736 -5 0.07054901123046875 2 Carbamidomethyl (C) _IDEC(Carbamidomethyl (C))FRQL_ REV__ENSG00000165970|ENST00000525748|SLC6A5;REV__nc|ENSG00000165970|Q9Y345-2|SLC6A5;REV__nc|ENSG00000165970|Q9Y345-3|SLC6A5 26.88365393820708 0.39599352634412927 2 {I|L}DY{[NV]|[RG]}{[NV]|[RG]}P{M(Oxidation (M))|F} 9 -1 + 27.884 0 0 2.583 2.583 81.467 0 0 0 -2.4747024042640255 3.301208380675366 -2.4747024042640255 3.520599913279625 0 0 0 0.3252574989159953 0.5 {I|L}DY{[NV]|[RG]}{[NV]|[RG]}P{M(Oxidation (M))|F};{I|L}D[HN][QP]{I|L}P{M(Oxidation (M))|F};{I|L}D[{M(Oxidation (M))|F}V]{[ET]|[MV]}{I|L}P{M(Oxidation (M))|F};[YT]WWEA[KP];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))E]|[WC]}TA[KP];{[CT]|[{M(Oxidation (M))|F}G]}EE{[DS]|[MA]|[CV]|TT}TA[KP];{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}EA[KP];{[CT]|[{M(Oxidation (M))|F}G]}[{M(Oxidation (M))|F}E][HM]S{I|L}{I|L};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))E]|[WC]}[NG]{I|L}{I|L} 2.583;2.2569;2.1239;1.6579;0.82114;0.45501;0.42244;0.37392;0.35797 -;-;-;-;-;-;-;-;- 601 + NaN NaN 167068.8 NaN 19751 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24331 96.517 NaN 346960 35 0 34621 0.261 + 26163 SPMDIFDMF 9 66 559.7304178944435 NaN 0 559.730712890625 PEAK HCD FTMS 0 0 0 24328 56419.62890625 0.11678255961726655 28 -0.569854736328125 3 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 61.357469665136826 0.022835916367010354 2 {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 4 5 36.375 0 0 3.2552 0 0 430.15222875588057 162.05573450260002 592.2079632584806 0 0 0 0 0 2.110924374808178 0 0.3494850021680094 0 + {I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F} 3.2552 + + 155 + NaN NaN 142639.4 NaN 19752 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24332 96.521 NaN 132160 35 0 11500 0.261 + 13679 KYPENFFLL 9 54 585.8134562249431 NaN 0 585.812744140625 PEAK HCD FTMS 0 0 0 24328 13503.3515625 0.16122382162325524 -11 0.17317962646484375 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 8 15.217 0 0 1.301 0 0 131.09679301887792 775.3403414361936 906.4371344550716 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.301 - 6 + NaN NaN 125570.5 NaN 19753 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24333 96.524 NaN 556560 35 0 107670 0.262 + 15476 LPDLVVEIL 9 58 505.8100266071 1009.605500281 2 505.8099060058594 MULTI HCD FTMS 0 0 0 24328 197245.71875 0.5418209062769409 -1 0.01284027099609375 5 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 30.636539890814138 0.10832830463492794 2 VVE{I|L}{I|L} 5 4 49.068 0 0 4.8601 0 0 438.2475758283219 0 438.2475758283219 0 31.989700043360187 0 0 0 1.5 0 0 0 + VVE{I|L}{I|L} 4.8601 + + 35 NaN NaN 176282.3 NaN 19754 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24334 96.527 NaN 587450 35 0 224790 0.261 -1 VLGLVHMDV 9 44 499.77093260050503 997.5273122678101 2 499.7707214355469 MULTI HCD FTMS 0 0 0 24328 68849.4921875 0.6730566841815849 2 -0.05568695068359375 6 Oxidation (M) _VLGLVHM(Oxidation (M))DV_ ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3 4.3292370932331545 0.3181982124262546 2 V{I|L} 2 -1 20.969 0 0 2.1021 0 0 0 782.3515270745827 782.3515270745827 18.494850021680094 0 0 0 0 0 0 0 0 V{I|L} 2.1021 + + 4 + NaN NaN 175330.3 NaN 19755 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24335 96.531 NaN 187710 35 0 16621 0.261 + 10949 IYDFIGEFM 9 67 567.7620747800446 1133.509596626889 2 567.7619018554688 MULTI HCD FTMS 0 0 0 24328 28741.642578125 0.5751747659995696 3 -0.07186126708984375 7 Unmodified _IYDFIGEFM_ ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147 25.399314129420986 0.14091189997036632 2 {I|L}W{M(Oxidation (M))|F}M 4 6 39.412 0 0 3.477 0 0 538.2424183576187 0 538.2424183576187 0 10.538500383907348 0 0 0 1.5 0 0 0 {I|L}W{M(Oxidation (M))|F}M 3.477 - 238 NaN NaN 134280 NaN 19756 4577 24328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24337 96.535 NaN 4435200 35 0 840410 0.327 + 15696 LPEPYWIVL 9 60 565.3181516482758 1128.6217503633516 2 565.3185424804688 MULTI HCD FTMS 0 0 0 24336 3147550.5 0.6932233576073242 5 -0.12421417236328125 1 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 2 W{I|L}V{I|L} 4 5 45.433 0 0 4.0255 0 0 599.2955138047786 0 599.2955138047786 0 38.0866814795592 0 0 0 1.5 0 0 0 + W{I|L}V{I|L} 4.0255 + + 40 NaN NaN 612450.6 NaN 19757 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24338 96.54 NaN 1266800 35 0 217840 0.261 + 235 AFDLSQVLF 9 70 520.2765757054096 1038.5385984776192 2 520.2767333984375 MULTI HCD FTMS 0 0 0 24336 759586.875 0.354266953576865 -5 0.08412933349609375 2 Unmodified _AFDLSQVLF_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 86.33184430468982 0.004622086694044132 2 {I|L}SQV{I|L}{M(Oxidation (M))|F} 6 3 77.938 0 0 7.5046 0 0 333.1315097523484 0 333.1315097523484 0 41.40546909946899 0 0 0 2.7059771852360797 0 1.274227503252014 0 + {I|L}SQV{I|L}{M(Oxidation (M))|F} 7.5046 + + 508 NaN NaN 284722.6 NaN 19758 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24339 96.543 NaN 712710 35 0 63915 0.261 + 2947 DYTTWTALL 9 85 542.2713805689125 1082.528208204625 2 542.2716064453125 MULTI HCD FTMS 0 0 0 24336 186336.203125 0.5132031438946321 -5 0.08412933349609375 3 Unmodified _DYTTWTALL_ ENSG00000076382|ENST00000321765|SPAG5 141.82661023413823 1.746659319327287E-05 2 {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L} 9 0 + 92.145 0 0 8.512 8.512 95.24 0 0 0 16.505149978319906 16.478174818886373 16.478174818886373 16.505149978319906 0 2.4604093769761874 1.3010299956639813 1.6906140654642812 0 + + {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ETWTA{I|L}{I|L};E{[{M(Oxidation (M))|F}C]|[YS]}TWTA{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TT{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}P{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}TT{[QV]|[N{I|L}]|[RA]|[KV]}M{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TTW[VS]V{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[QP][YE]A{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}[KA]{[ET]|[MV]}{I|L}P{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{I|L}[WC(Carbamidomethyl (C))]{I|L};[YV]{I|L}{[ET]|[MV]}[WC(Carbamidomethyl (C))]{I|L} 8.512;6.9873;4.2807;3.7269;3.4052;3.3198;3.2328;2.253;2.0988;1.9509 +;-;-;-;-;-;-;-;-;- + 850 NaN NaN 206195.6 NaN 19759 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24340 96.547 NaN 413670 35 0 111840 0.261 + 1002 AYFNFPELL 9 45 557.284304073753 1112.554055214306 2 557.284912109375 MULTI HCD FTMS 0 0 0 24336 232782.328125 0.0038293636332634826 54 -1.0975875854492188 4 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 47.748688679222035 0.03472022231463587 2 N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 6 3 41.688 0 0 3.747 0 0 381.16795546699376 0 381.16795546699376 0 34.24024714504206 0 0 0 1.305462187404089 0 0 0.7742275032520141 + N{M(Oxidation (M))|F}[EP]{I|L}{I|L} 3.747 + + 42 NaN NaN 148535.8 NaN 19760 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24341 96.55 NaN 199720 35 0 37118 0.261 -1 PYRSCDLF 8 51 529.2423928585112 1056.4702327838222 2 529.2423706054688 MULTI HCD FTMS 0 0 0 24336 133741.3125 1 0 0 5 Carbamidomethyl (C) _PYRSC(Carbamidomethyl (C))DLF_ ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant 5.760428011301431 0.5334459684533844 2 AD{I|L}{M(Oxidation (M))|F} 4 -1 28.972 0 0 2.7424 0 0 592.2443549535473 0 592.2443549535473 0 17.54554718523508 0 0 0 0 0 0.3054621874040891 0 AD{I|L}{M(Oxidation (M))|F} 2.7424 - 61 + NaN NaN 134917.9 NaN 19761 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24342 96.553 NaN 130740 35 0 6091.2 0.261 + 23097 RERRRRRNLF 10 64 486.95896564295595 1457.8550675290678 3 486.9591064453125 MULTI HCD FTMS 0 0 0 24336 92609.3515625 0.5047392016909236 -13 0.22203826904296875 6 Unmodified _RERRRRRNLF_ REV__ENSG00000150637|ENST00000582621|CD226 0.15932191953741626 0.4744603884079788 2 A 1 -1 4.6041 0 0 0.31581 0 0 61.05555606404511 1322.7532823082524 1383.8088383722975 0 0 0 0 0 0 0 0 0 A 0.31581 - 8 + NaN NaN 127720.2 NaN 19762 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24343 96.557 NaN 214200 35 0 33984 0.261 + 3530 EILEWYPVL 9 50 581.3130287682401 1160.61150460328 2 581.3129272460938 MULTI HCD FTMS 0 0 0 24336 81807.046875 0.5333454284635358 3 -0.07184600830078125 7 Unmodified _EILEWYPVL_ REV__ENSG00000152582|ENST00000356031|SPEF2;REV__nc|ENSG00000152582|Q9C093-2|SPEF2;REV__NIPBL-SPEF2|2|fusion 16.942295170755138 0.21397866736869717 2 {I|L}V{I|L} 3 -1 29.693 0 0 2.5584 0 0 817.3644276349625 0 817.3644276349625 0 17.597499264297696 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.5584 - 68 NaN NaN 138262.1 NaN 19763 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24344 96.56 NaN 192010 35 0 55835 0.262 + -1 LERKCCGA 8 45 468.72325976408223 935.4319665949645 2 468.7234191894531 MULTI HCD FTMS 0 0 0 24336 64340.10546875 0.5828416242697789 9 -0.2055206298828125 8 Carbamidomethyl (C) _LERKC(Carbamidomethyl (C))CGA_ REV__chr7:101805165-101916115|115|14.88|0.02|9.35|+|0|None,CUX1|1 0.7936320650641473 0.540814922690045 2 Q 1 -1 5.4846 0 0 0.58631 0 0 396.2831761670332 408.06928430728755 804.3524604743208 0 0 0 0 0 0 0 0 0 Q 0.58631 - 11 + NaN NaN 138958.6 NaN 19764 4578 24336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24346 96.565 NaN 1399800 35 0 288330 0.327 + 14825 LITDILDTF 9 86 525.7894750196521 1049.564397106104 2 525.78955078125 MULTI HCD FTMS 0 0 0 24345 470896.5 0.7294019902839262 -4 0.0846405029296875 1 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 164.5152109175784 6.8106583686994766E-09 2 {I|L}{I|L}TD{I|L}{I|L}DT{M(Oxidation (M))|F} 9 0 + 117.38 0 0 11.184 11.184 96.619 0 0 0 16.421342392960753 16.421342392960753 16.421342392960753 14.528937514676485 0 3.110924374808178 1.3979400086720375 1.9436726795685342 0 + + {I|L}{I|L}TD{I|L}{I|L}DT{M(Oxidation (M))|F};{I|L}{I|L}TD{I|L}D{I|L}T{M(Oxidation (M))|F};{I|L}{I|L}TD{I|L}{[ET]|[MV]}V{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}{I|L}DT{M(Oxidation (M))|F};{I|L}{I|L}TD{I|L}D{M(Oxidation (M))|F}[{I|L}T];{I|L}{I|L}TD{I|L}[{M(Oxidation (M))|F}V]{[ET]|[MV]};{I|L}{I|L}T[{M(Oxidation (M))|F}V]{I|L}D{[ET]|[MV]};{I|L}{I|L}TD[{M(Oxidation (M))|F}V]{I|L}{[ET]|[MV]};{I|L}{I|L}T[{M(Oxidation (M))|F}V]D{I|L}{[ET]|[MV]};{I|L}{I|L}TD{[{M(Oxidation (M))|F}D]|MM}T{I|L}{I|L} 11.184;9.7993;7.0789;6.8574;6.1747;5.3896;4.1542;3.5557;3.1553;3.1372 +;-;-;-;-;-;-;-;-;- + 584 + NaN NaN 312667.8 NaN 19765 4579 24345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24347 96.569 NaN 303210 35 0 71600 0.261 + 8864 HMLLCSIPL 9 62 513.7780222331359 1025.5414915330716 2 513.7785034179688 MULTI HCD FTMS 0 0 0 24345 100155.1640625 0.8509982776059499 2 -0.0423431396484375 2 Unmodified _HMLLCSIPL_ ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA 21.74664581756881 0.17247014374749275 2 {I|L}{I|L}AVDD{I|L} 7 6 48.632 0 0 4.7421 0 0 268.1034107892594 0 268.1034107892594 0 34.02835415434268 0 0 0 1.9291746928241125 0 0 0 {I|L}{I|L}AVDD{I|L} 4.7421 - 132 NaN NaN 136719.7 NaN 19766 4579 24345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24348 96.573 NaN 273300 35 0 15516 0.261 + 22685 QWSRLRRRAGR 11 71 481.28353142384896 1440.828764871747 3 481.2835998535156 MULTI HCD FTMS 0 0 0 24345 180094.078125 0.42373834032369195 -12 0.2194671630859375 3 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.1097533296519684 0.4140536653900533 2 N 1 -1 13.539 0 0 0.93968 0 0 414.2497386376013 909.4898775690061 1323.7396162066075 0 0 0 0 0 0.805462187404089 0 0 0 N 0.93968 - 9 + NaN NaN 131257.2 NaN 19767 4579 24345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24349 96.576 NaN 140290 35 0 15223 0.261 + 10470 IPDLVIYLS 9 54 516.8011724635725 1031.5877919939448 2 516.8013305664062 MULTI HCD FTMS 0 0 0 24345 29523.9765625 0.31368081571791917 1 -0.01617431640625 4 Unmodified _IPDLVIYLS_ AK9|p.M1006Vfs*17|1|0.26|ENSG00000155085|chr6:109546075-109546076|AT/-|frameshift_variant;ENSG00000155085|ENST00000424296|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF;nc|ENSG00000155085|Q5TCS8-1|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9 14.838274106304384 0.23215694253501695 2 {I|L}PD{I|L}VQV 7 4 21.916 0 0 2.1245 0 0 0 264.13474451236567 264.13474451236567 14.92615720758863 0 0 0 0 0.1989700043360188 0 0.4247425010840047 0 {I|L}PD{I|L}VQV 2.1245 - 35 + NaN NaN 110805 NaN 19768 4579 24345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24351 96.581 NaN 1436400 35 0 400690 0.327 + 11296 IYLTFPVAMF 10 80 609.3176593529477 1216.6207657726952 2 609.3179321289062 MULTI HCD FTMS 0 0 0 24350 647833 0.4326642533962339 -3 0.07186126708984375 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 123.41 0 0 10.144 10.144 91.874 0 0 0 22.754537344402905 96.8125212930689 22.754537344402905 5.523787536356579 0 3.138210492164445 1.6989700043360187 1.9916440611282626 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]VVYPVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{I|L}YPVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T[HQ]{[NV]|[RG]}{[ET]|[MV]} 10.144;9.69;8.923;6.0949;5.8446;5.282;5.2327;4.6036;2.1273 +;-;-;-;-;-;-;-;- + 756 NaN NaN 308015.4 NaN 19769 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24352 96.586 NaN 949960 35 0 218150 0.262 + 29919 VFDVALLDL 9 67 502.78686784590974 1003.5591827586195 2 502.7868957519531 MULTI HCD FTMS 0 0 0 24350 240839.0625 0.6778628653302942 3 -0.0785369873046875 2 Unmodified _VFDVALLDL_ ENSG00000122642|ENST00000242209|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 71.92227651296345 0.008466197542043549 2 {NN|[MP]|[D{I|L}]|[EV]}[R{M(Oxidation (M))|F}]{I|L}{I|L}D 7 5 55.01 0 0 5.4815 0 0 0 128.0724488793118 128.0724488793118 35.40562282654413 0 0 0 0 1.4247425010840047 1.3979400086720375 1.079689690656103 0 {NN|[MP]|[D{I|L}]|[EV]}[R{M(Oxidation (M))|F}]{I|L}{I|L}D 5.4815 - 141 NaN NaN 230610.5 NaN 19770 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24353 96.589 NaN 373980 35 0 53170 0.261 + 17650 LYYQMTIVL 9 60 572.3081937948516 1142.6018346565031 2 572.809814453125 MULTI HCD FTMS 0 0 0 24350 79523.3203125 0.3565762866996674 5 -0.1209564208984375 3 Unmodified _LYYQMTIVL_ REV__SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant 19.256988751693697 0.19398022840297344 2 {I|L}V{I|L} 3 -1 34.693 0 0 3.0363 0 0 799.3525853226756 0 799.3525853226756 0 27.658715643802765 0 0 0 0.8494850021680094 0 0 0 {I|L}V{I|L} 3.0363 + + 42 NaN NaN 154968.6 NaN 19771 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24354 96.592 NaN 182840 35 0 30311 0.261 + 942 AYEDWFITL 9 48 579.279349102131 1156.544145271062 2 579.2791748046875 MULTI HCD FTMS 0 0 0 24350 84074.5390625 0.48962026286295296 6 -0.1305694580078125 4 Unmodified _AYEDWFITL_ ENSG00000081923|ENST00000648908|ATP8B1 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}{I|L}[{I|L}T] 4 5 29.693 0 0 2.5674 0 0 664.2492700629408 0 664.2492700629408 0 24.20818753952375 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}[{I|L}T] 2.5674 + + 38 NaN NaN 127951.2 NaN 19772 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24355 96.596 NaN 170510 35 0 17190 0.261 + 33881 YLLYKYNL 8 38 545.3010449654413 NaN 0 545.2847900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLLYKYNL_ ENST00000314728.9_1_17:19239740-19240025:+|nuORF 13.50788311687929 0.38822285293237185 2 T{I|L}A{[MG]|[TS]}A{I|L} 7 6 25.221 0 0 2.3169 0 0 165.1122252773443 263.10337244205317 428.21559771939746 0 0 0 0 0 0 0 0.3494850021680094 0 T{I|L}A{[MG]|[TS]}A{I|L} 2.3169 - 54 + NaN NaN 114881.4 NaN 19773 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24356 96.599 NaN 173850 35 0 14341 0.261 + 12297 KLPALFFLF 9 59 548.3343579908607 NaN 0 548.334716796875 PEAK HCD FTMS 0 0 0 24350 6160.73974609375 0.1961972165025915 4 -0.0915069580078125 6 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 12.531546534597751 0.23452071659215576 2 {I|L}E{M(Oxidation (M))|F}[RH]P 6 7 21.911 0 0 2.0017 0 0 150.1691207938149 162.05581079654533 312.22493159036026 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L}E{M(Oxidation (M))|F}[RH]P 2.0017 - 40 + NaN NaN 125448.6 NaN 19774 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24357 96.602 NaN 70223 35 0 16649 0.262 + -1 SGPGDGLRM 9 33 453.2096864366654 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 24350 18470.294921875 0.42822815406266046 6 -0.1305694580078125 7 Oxidation (M) _SGPGDGLRM(Oxidation (M))_ REV__ENST00000262366.7_1_16:4389276-4389498:+|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95476 NaN 19775 4580 24350 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24359 96.607 NaN 2501100 35 0 386430 0.327 + 17142 LYLPSFFTY 9 101 575.79444686376 1149.5743407943198 2 575.7946166992188 MULTI HCD FTMS 0 0 0 24358 569974.9375 0.05888664200068828 -7 0.1431121826171875 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 146.00731375242447 1.3047045798573153E-05 2 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 90.952 0 0 7.9118 7.9118 93.2 0 0 0 20.113168458567685 51.33417202263437 20.113168458567685 11.53212513775344 0 2.7302046884880937 1.6989700043360187 1.079689690656103 0 + + [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]P{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}Y[PA]{M(Oxidation (M))|F}TY;[{I|L}P]Y{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}[PA]Y{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[{I|L}P]E{[NV]|[RG]}[CS]{I|L}{I|L}Y;[EP]{I|L}{[NV]|[RG]}[CS]{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]{M(Oxidation (M))|F}Y[PS]{I|L}{I|L}Y 7.9118;6.9087;6.2991;5.2508;3.5482;3.1776;2.9004;2.7717;2.7463;2.5803 +;-;-;-;-;-;-;-;-;- + 2947 NaN NaN 462480.6 NaN 19776 4581 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24360 96.612 NaN 319760 35 0 34205 0.261 + 265 AFKWFCFL 8 61 531.2675091547169 1060.5204653762337 2 531.2676391601562 MULTI HCD FTMS 0 0 0 24358 121534.90625 0.3921470701878781 -2 0.0423431396484375 2 Unmodified _AFKWFCFL_ REV__ENSG00000109181|ENST00000265403|UGT2B10;REV__ENSG00000135226|ENST00000335568|UGT2B28;REV__ENSG00000171234|ENST00000305231|UGT2B7;REV__ENSG00000213759|ENST00000446444|UGT2B11;REV__nc|ENSG00000109181|P36537-2|UGT2B10 20.871210003555333 0.44023077629866025 2 QS{I|L}D{[CP]|[EA]} 6 -1 42.638 0 0 4.0205 0 0 399.21220746123583 0 399.21220746123583 0 5.203037561203843 0 0 0 1.6989700043360187 0 0 0.3252574989159953 QS{I|L}D{[CP]|[EA]} 4.0205 - 113 NaN NaN 138322.6 NaN 19777 4581 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24361 96.615 NaN 191630 35 0 13404 0.261 + 11376 IYNQVFLLL 9 54 561.8315115092128 1121.6484700852254 2 561.8319091796875 MULTI HCD FTMS 0 0 0 24358 74516.78125 0.6130536100571626 -2 0.0423431396484375 3 Unmodified _IYNQVFLLL_ ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5 34.10243960390752 0.09241788333544565 2 V{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5 4 48.672 0 0 4.3393 0 0 518.2468128888687 0 518.2468128888687 0 41.68243764792422 0 0 0 1.7614393726401687 0 0 0 + V{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.3393 + + 64 NaN NaN 118712.8 NaN 19778 4581 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24362 96.619 NaN 540480 35 0 81247 0.261 -1 SCADGRCPLN 10 76 546.7320796715952 1091.4496064099903 2 546.7320556640625 MULTI HCD FTMS 0 0 0 24358 42848.453125 0.34969501958625493 -2 0.0423431396484375 4 Carbamidomethyl (C) _SCADGRC(Carbamidomethyl (C))PLN_ LRP1B|p.L2858P|1|0.23|ENSG00000168702|chr2:140503052-140503052|A/G|missense_variant 8.745405648335112 0.42901288225909884 2 Q{I|L}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 8 -1 25.648 0 0 2.3499 0 0 117.92352705721915 0 117.92352705721915 0 1.936974992327123 0 0 0 0 0 0 0.3252574989159953 Q{I|L}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]} 2.3499 - 149 + NaN NaN 177621.4 NaN 19779 4581 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24363 96.622 NaN 395430 35 0 73799 0.261 + 16874 LYFCLHFVM 9 53 586.7853388726219 1171.5561248120437 2 586.7855834960938 MULTI HCD FTMS 0 0 0 24358 94916.40625 0.05125358213573318 -7 0.1431121826171875 5 Unmodified _LYFCLHFVM_ chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|74;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|75;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|45;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|53;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|20;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|335|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|326|3|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense 14.581692164780916 0.23437375358055648 2 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 5 68.678 0 0 5.8621 0 0 0 301.08039270572505 301.08039270572505 41.15942308353809 0 0 0 0 1.3252574989159953 1.6989700043360187 0 0 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.8621 - 209 + NaN NaN 157802.9 NaN 19780 4581 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24364 96.625 NaN 187870 35 0 28983 0.261 + 33822 YLITDQAETVS 11 56 620.308187069346 1238.601821205492 2 620.3088989257812 MULTI HCD FTMS 0 0 0 24358 57462.7265625 0.353681733856891 -7 0.1431121826171875 6 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 24.990960013464015 0.23933535780272686 2 {I|L}Y{I|L}T{M(Oxidation (M))|F} 5 -1 74.508 0 0 6.0155 0 0 0 598.232335286738 598.232335286738 48.3103844862778 0 0 0 0 1.5752574989159953 1.6989700043360187 0.3807196863200844 0 {I|L}Y{I|L}T{M(Oxidation (M))|F} 6.0155 - 75 + NaN NaN 123882.4 NaN 19781 4581 24358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24366 96.63 NaN 932710 35 0 97174 0.327 + 17383 LYQILQGIVF 10 73 597.3501997907986 1192.685846648397 2 597.3504638671875 MULTI HCD FTMS 0 0 0 24365 244182.171875 0.08997332084288165 -6 0.1337432861328125 1 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 81.89019881105858 0.0034965057646611547 2 [Q{I|L}]Y{I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 10 2 + 73.99 0 0 6.2036 6.2036 64.24 0 0 0 0 16.53212513775344 0 0 0 2.3494850021680094 0 0 1.4119543704721593 [Q{I|L}]Y{I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Q{I|L}]Y{I|L}{I|L}[AG]{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}{[TV]|[{I|L}S]}{I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}Q[VG]{I|L}{M(Oxidation (M))|F};[Q{I|L}]Y{I|L}{I|L}Q[VG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG][VG]{I|L}{M(Oxidation (M))|F};[Q{I|L}]Y{I|L}{I|L}[AG][VG]{I|L}{M(Oxidation (M))|F} 6.2036;6.2036;5.4352;5.4352;5.1625;4.9587;4.8791;4.8791;4.1107;4.1107 -;+;-;-;-;-;-;-;-;- + 333 NaN NaN 241248.2 NaN 19782 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24367 96.635 NaN 218300 35 0 27453 0.261 + -1 IFSSFAMIVI 10 60 572.3081937948516 1142.6018346565031 2 572.3079223632812 MULTI HCD FTMS 0 0 0 24365 92487.390625 0.33936559565406044 8 -0.16241455078125 2 Oxidation (M) _IFSSFAM(Oxidation (M))IVI_ REV__ENSG00000172464|ENST00000544374|OR5AP2 19.256988751693697 0.33098864134661865 2 {M(Oxidation (M))|F}{I|L}V{I|L} 4 -1 36.983 0 0 3.2367 0 0 652.3226795880875 0 652.3226795880875 0 23.79493455131808 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}{I|L}V{I|L} 3.2367 + + 62 NaN NaN 123160.4 NaN 19783 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24368 96.638 NaN 96587 35 0 5797.9 0.261 + 22491 QRQRHVRLHQK 11 52 495.958854098594 1484.854732895982 3 495.958251953125 MULTI HCD FTMS 0 0 0 24365 53744.5625 0.4265902761310499 19 -0.374176025390625 3 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.5059551277355931 0.4167017191902429 2 P 1 -1 5.4846 0 0 0.36937 0 0 852.489939050082 532.2800997369749 1384.7700387870568 0 0 0 0 0 0 0 0 0 P 0.36937 - 4 + NaN NaN 109263 NaN 19784 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24369 96.641 NaN 106200 35 0 9687.1 0.261 + 33109 YDTLSEQHI 9 44 553.2626502206776 1104.5107475081552 2 553.2628173828125 MULTI HCD FTMS 0 0 0 24365 43399.390625 0.607610883816522 -1 0.0228729248046875 4 Unmodified _YDTLSEQHI_ REV__ENSG00000154237|ENST00000388948|LRRK1;REV__ENST00000525284.5_1_15:101602697-101609050:+|nuORF;REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF 17.11289562659939 0.2125047172822487 2 {[YD]|[{M(Oxidation (M))|F}M]}TTWT 6 -1 50.45 0 0 4.5677 0 0 0 334.1744783990844 334.1744783990844 30.986446888048107 0 0 0 0 0.805462187404089 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}TTWT 4.5677 - 37 + NaN NaN 106650.3 NaN 19785 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24370 96.645 NaN 166040 35 0 42440 0.261 + 34705 YPVEDYLDLF 10 47 637.3026826423402 1272.5908123514803 2 637.3021240234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YPVEDYLDLF_ ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15 8.745405648335112 0.42901288225909884 2 {I|L}D{I|L}{M(Oxidation (M))|F} 4 6 33.928 0 0 2.666 0 0 766.313768455275 0 766.313768455275 0 29.948500216800937 0 0 0 0.5 0 0 0 + {I|L}D{I|L}{M(Oxidation (M))|F} 2.666 + + 18 NaN NaN 124287.7 NaN 19786 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24371 96.648 NaN 353640 35 0 52915 0.261 + -1 LYWCDSNMR 9 71 602.2503009179278 1202.4860489026555 2 602.250732421875 MULTI HCD FTMS 0 0 0 24365 81684.7109375 0.12700791353371402 -6 0.1337432861328125 6 Oxidation (M) _LYWCDSNM(Oxidation (M))R_ REV__ENSG00000123505|ENST00000368885|AMD1;REV__nc|ENSG00000123505|P17707-2|AMD1 4.3292370932331545 0.3181982124262546 2 [Y{I|L}]{I|L} 3 -1 21.082 0 0 1.7532 0 0 0 810.2313546490024 810.2313546490024 8.608018480247779 0 0 0 0 0 1.3010299956639813 0 0 [Y{I|L}]{I|L} 1.7532 - 42 NaN NaN 140647.6 NaN 19787 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24372 96.651 NaN 72214 35 0 6189.4 0.263 + 20707 PFSVPLSPL 9 38 478.7762896027608 955.5380262723216 2 478.7759094238281 MULTI HCD FTMS 0 0 0 24365 21607.779296875 0.04116564824520178 18 -0.351531982421875 7 Unmodified _PFSVPLSPL_ REV__ENSG00000169715|ENST00000330439|MT1E 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 25.969 0 0 2.7177 0 0 711.360689384318 0 711.360689384318 0 21.989700043360187 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.7177 - 10 NaN NaN 106142.1 NaN 19788 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24373 96.655 NaN 48278 35 0 6260.6 0.261 -1 YNLKTSCPYV 10 29 622.8013704678534 NaN 0 622.80224609375 PEAK HCD FTMS 0 0 0 24365 16476.1875 0.8952277417398079 1 -0.0294952392578125 8 Carbamidomethyl (C) _YNLKTSC(Carbamidomethyl (C))PYV_ ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20 3.5964929083625545 0.337106189561315 2 {I|L} 1 -1 6.9897 0 0 0.56206 0 0 853.3990533362943 274.08249841861567 1127.48155175491 0 0 0 0 0 0 0 0 0 {I|L} 0.56206 + + 3 + NaN NaN 97824.2 NaN 19789 4582 24365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24375 96.66 NaN 265350 35 0 21274 0.327 + 26157 SPMDIFDMF 9 68 559.7306554421604 1117.4467579511206 2 559.7302856445312 MULTI HCD FTMS 0 0 0 24374 170742.3125 0.851038039795452 -7 0.163238525390625 1 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 52.268347100219714 0.028397529699942435 2 {[{M(Oxidation (M))|F}D]|MM}PA{I|L}YDM{M(Oxidation (M))|F} 9 5 + 57.56 0 0 5.151 5.151 82.982 0 0 0 0.3090281539735429 37.44920070930627 0.3090281539735429 0.9691001300805624 0 2.25 0 0.4247425010840047 0 {[{M(Oxidation (M))|F}D]|MM}PA{I|L}YDM{M(Oxidation (M))|F};[MD][PS]{I|L}YDM{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}PA{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[MD][PS]{I|L}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.151;5.0643;4.1915;4.1048 -;-;-;- 297 NaN NaN 141215 NaN 19790 4583 24374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24376 96.664 NaN 197650 35 0 19050 0.261 + 11144 IYIPSYFDF 9 58 582.7840844012125 1163.5536158692248 2 582.78369140625 MULTI HCD FTMS 0 0 0 24374 186397.296875 0.784338654381041 -5 0.12421417236328125 2 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 23.1484247019978 0.1603590852062899 2 {M(Oxidation (M))|F}YD 3 7 30.49 0 0 2.6204 0 0 720.384205735707 0 720.384205735707 0 2.0217596488785006 0 0 0 0.7302046884880937 0 0 0 {M(Oxidation (M))|F}YD 2.6204 - 227 NaN NaN 131918.3 NaN 19791 4583 24374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24377 96.668 NaN 61602 35 0 12298 0.263 -1 PPEMVGMI 8 37 453.2096864366654 NaN 0 453.20947265625 PEAK HCD FTMS 0 0 0 24374 27291.021484375 0.6327340089679487 9 -0.1651153564453125 3 2 Oxidation (M) _PPEM(Oxidation (M))VGM(Oxidation (M))I_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102501.4 NaN 19792 4583 24374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24379 96.673 NaN 1327600 35 0 226600 0.327 + 236 AFDLSQVLF 9 76 520.2765757054096 1038.5385984776192 2 520.2767944335938 MULTI HCD FTMS 0 0 0 24378 1079176.625 0.5033217764723921 1 -0.029449462890625 1 Unmodified _AFDLSQVLF_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 118.0683919894846 0.0016252157255221692 2 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{I|L}{M(Oxidation (M))|F} 9 0 + 87.713 0 0 8.4458 8.4458 92.697 0 0 0 3.65279269351241 53.63744417534931 3.65279269351241 9.208187539523749 0 3.079689690656103 0 1.2302046884880937 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}S[AG]V{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}S[AG]V{M(Oxidation (M))|F}{I|L};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}DQV{I|L}{M(Oxidation (M))|F};[{I|L}V]QS{M(Oxidation (M))|F}{[DA]|[EG]}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}K{[DA]|[EG]}{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}D[AG]V{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}DQV{M(Oxidation (M))|F}{I|L};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S{M(Oxidation (M))|F}{[DA]|[EG]}{I|L}{M(Oxidation (M))|F} 8.4458;7.5592;7.096;6.2093;6.1601;5.4575;5.2862;5.2734;4.8102;4.6747 +;-;-;-;-;-;-;-;-;- + 661 NaN NaN 294654.2 NaN 19793 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24380 96.677 NaN 1557100 35 0 283400 0.261 + 15697 LPEPYWIVL 9 58 565.3181516482758 1128.6217503633516 2 565.3184204101562 MULTI HCD FTMS 0 0 0 24378 817715.8125 0.1800955063659348 11 -0.21379852294921875 2 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 34.10243960390752 0.09241788333544565 2 W{I|L}V{I|L} 4 5 46.938 0 0 4.1589 0 0 599.2947238071266 0 599.2947238071266 0 32.33410649039925 0 0 0 1.5 0 0 0 + W{I|L}V{I|L} 4.1589 + + 45 NaN NaN 333527.2 NaN 19794 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24381 96.681 NaN 542730 35 0 64678 0.261 + 2948 DYTTWTALL 9 82 542.2713805689125 1082.528208204625 2 542.2716064453125 MULTI HCD FTMS 0 0 0 24378 221972.890625 0.6113529384931717 1 -0.029449462890625 3 Unmodified _DYTTWTALL_ ENSG00000076382|ENST00000321765|SPAG5 141.82661023413823 1.746659319327287E-05 2 {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L} 9 0 + 96.754 0 0 8.9378 8.9378 95.547 0 0 0 15.471062485323515 16.478174818886373 15.471062485323515 15.471062485323515 0 2.531234684152075 1.5228787452803376 1.8411290632962718 0 + + {[YD]|[{M(Oxidation (M))|F}M]}TTWTA{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}ETWTA{I|L}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}[QP][YE]A{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}TT{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N;{[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{I|L}[WC(Carbamidomethyl (C))]{I|L};{[YD]|[{M(Oxidation (M))|F}M]}T{I|L}{I|L}T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N;{[{M(Oxidation (M))|F}C]|[YS]}ET{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N;{[{M(Oxidation (M))|F}C]|[YS]}E{I|L}{I|L}T{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}N;[{I|L}A]T[CS]RRYN;[YV]{I|L}{[ET]|[MV]}[WC(Carbamidomethyl (C))]{I|L} 8.9378;7.5086;3.6056;2.7364;2.1075;1.7838;1.3072;0.35459;0.2586;0.17293 +;-;-;-;-;-;-;-;-;- + 874 NaN NaN 197393.8 NaN 19795 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24382 96.684 NaN 979760 35 0 247770 0.261 + 4482 EYIQFVPLL 9 80 561.3156922565188 1120.6168315798375 2 561.3160400390625 MULTI HCD FTMS 0 0 0 24378 220266.734375 0.018264464138946314 -11 0.2213134765625 4 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 96.11092074494114 0.00436583732602279 2 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 79.721 0 0 7.1141 7.1141 92.047 0 0 0 18.600840614449794 40.336003313407076 18.600840614449794 12.460762528683702 0 2.274227503252014 0 1.7174165578762484 0.3252574989159953 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};{[QD]|[EN]|[WG]|[KD]|[RS]}{I|L}{M(Oxidation (M))|F}[{M(Oxidation (M))|F}E]P{I|L}{I|L};[YE][{M(Oxidation (M))|F}V][Q{I|L}]P{I|L}{I|L} 7.1141;6.0021;2.7313;2.1347 +;-;-;- + 405 NaN NaN 253102.2 NaN 19796 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24383 96.687 NaN 367080 35 0 48649 0.261 + 18383 MPPWENIWL 9 56 593.2916882564286 1184.5688235796572 2 593.2919311523438 MULTI HCD FTMS 0 0 0 24378 90122.8828125 0.4008388416958633 -6 0.13718414306640625 5 Unmodified _MPPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 20.41453444215458 0.18397929046831515 2 EN{I|L}W{I|L} 5 4 45.688 0 0 3.8569 0 0 511.2250233380875 0 511.2250233380875 0 40.20303756120384 0 0 0 1.0114393726401687 0 0 0 + EN{I|L}W{I|L} 3.8569 + + 57 NaN NaN 152894.8 NaN 19797 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24384 96.691 NaN 297110 35 0 87593 0.261 + 1003 AYFNFPELL 9 40 557.284304073753 1112.554055214306 2 557.2844848632812 MULTI HCD FTMS 0 0 0 24378 85444.9921875 0.0014056047482762278 60 -1.1916122436523438 6 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}[EP]{I|L}{I|L} 5 4 31.51 0 0 2.8322 0 0 495.2111073224625 0 495.2111073224625 0 26.025684359364405 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}[EP]{I|L}{I|L} 2.8322 + + 15 NaN NaN 139980.3 NaN 19798 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24385 96.694 NaN 223540 35 0 29185 0.261 + 15477 LPDLVVEIL 9 48 505.8100266071 1009.605500281 2 505.80999755859375 MULTI HCD FTMS 0 0 0 24378 150849.5 0.4143735707897254 6 -0.1199493408203125 7 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 19.256988751693697 0.19398022840297344 2 VE{I|L}{I|L} 4 5 42.735 0 0 4.2329 0 0 537.3150394381865 0 537.3150394381865 0 25.74539712336197 0 0 0 1.2302046884880937 0 0 0 + VE{I|L}{I|L} 4.2329 + + 17 NaN NaN 127040 NaN 19799 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24386 96.697 NaN 79654 35 0 14032 0.261 -1 RLPRGRCFRVF 11 33 488.61073276579316 1462.8103688975796 3 489.26837158203125 MULTI HCD FTMS 0 0 0 24378 5462.36962890625 0.2636325746331863 -2 0.0424652099609375 8 Carbamidomethyl (C) _RLPRGRC(Carbamidomethyl (C))FRVF_ ENST00000566261.5_1_16:19179374-19184899:+|nuORF 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105770 NaN 19800 4584 24378 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24388 96.702 NaN 194410 35 0 23007 0.327 + 6893 FPVEFLIQV 9 49 546.3105991618448 1090.6066453904896 2 546.310546875 MULTI HCD FTMS 0 0 0 24387 30579.38671875 0.127287751716265 -5 0.1209564208984375 1 Unmodified _FPVEFLIQV_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9 13.90604991867851 0.24021115267848145 2 {I|L}QV 3 6 35.445 0 0 3.2501 0 0 732.382088132132 0 732.382088132132 0 14.018637558036673 0 0 0 0.9247425010840047 0 0 0 + {I|L}QV 3.2501 + + 38 NaN NaN 135880.4 NaN 19801 4585 24387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24389 96.707 NaN 248530 35 0 10270 0.261 -1 0 83 486.95896564295595 1457.8550675290678 3 486.9590759277344 MULTI HCD FTMS 0 0 0 24387 96216.875 0.5244009147814875 -6 0.1371307373046875 2 NaN NaN 2 A 1 -1 9.6041 0 0 0.65878 0 0 105.07745346824647 1278.7244056795475 1383.801859147794 0 0 0 0 0 0.5 0 0 0 A 0.65878 - 9 + NaN NaN 124101.2 NaN 19802 4585 24387 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24391 96.711 NaN 2034400 35 0 542600 0.327 + 11297 IYLTFPVAMF 10 84 609.3176593529477 1216.6207657726952 2 609.3177490234375 MULTI HCD FTMS 0 0 0 24390 800109.1875 0.5343640170308626 3 -0.06476593017578125 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 162.95088124538222 7.72408794244308E-11 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 126.03 0 0 10.359 10.359 92.005 0 0 0 22.754537344402905 92.4347644404424 22.754537344402905 5.523787536356579 0 3.110924374808178 1.6989700043360187 2.280369551124698 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T]Y{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T]Y{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}Y{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}Y{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}PV{M(Oxidation (M))|F} 10.359;9.9049;9.1379;7.8684;7.1014;7.0724;6.8351;5.1965;4.5812;3.5324 +;-;-;-;-;-;-;-;-;- + 2374 NaN NaN 399646.9 NaN 19803 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24392 96.716 NaN 377110 35 0 17297 0.263 + 30786 VPRRRRPDPRH 11 81 481.28353142384896 1440.828764871747 3 481.28350830078125 MULTI HCD FTMS 0 0 0 24390 285140.09375 0.6708981846782583 -5 0.104400634765625 2 Unmodified _VPRRRRPDPRH_ REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF 1.214830529360525 0.41359283248740725 2 {I|L}{[HG]|PP}{[SA]|[TG]} 5 -1 9.705 0 0 0.67357 0 0 957.5337391584 0 957.5337391584 0 3.239087409443183 0 0 0 0.9247425010840047 0 0 0 {I|L}{[HG]|PP}{[SA]|[TG]} 0.67357 - 19 NaN NaN 152466.5 NaN 19804 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24393 96.719 NaN 361430 35 0 65044 0.261 + 14826 LITDILDTF 9 59 525.7894750196521 1049.564397106104 2 525.78955078125 MULTI HCD FTMS 0 0 0 24390 145105.09375 0.22476264780389257 3 -0.06476593017578125 3 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 71.13359017698441 0.008721403657255008 2 {I|L}{I|L}TD{I|L}{I|L}DT{M(Oxidation (M))|F} 9 0 + 70.556 0 0 6.7224 6.7224 91.901 0 0 0 14.948500216800937 16.478174818886373 14.948500216800937 14.948500216800937 0 1.8252574989159953 1.3979400086720375 0.3252574989159953 0 + + {I|L}{I|L}TD{I|L}{I|L}DT{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}{I|L}DT{M(Oxidation (M))|F};{I|L}{I|L}T[{M(Oxidation (M))|F}E]{[DS]|[MA]|[CV]|TT}{I|L}{I|L} 6.7224;5.2982;1.1759 +;-;- + 469 NaN NaN 154134.3 NaN 19805 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24394 96.723 NaN 509820 35 0 46310 0.261 + 34511 YPFPVPPLL 9 63 521.8024391193347 NaN 0 521.8021850585938 PEAK HCD FTMS 0 0 0 24390 65646.359375 0.5254785426867431 -2 0.0390625 4 Unmodified _YPFPVPPLL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 14.581692164780916 0.22376707489839515 2 {I|L}V 2 8 10.969 0 0 1.0531 0 0 166.12516076352932 660.2888277643186 826.413988527848 0 0 0 0 0 0 0 0 0 {I|L}V 1.0531 - 157 + NaN NaN 159111.2 NaN 19806 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24395 96.726 NaN 119560 35 0 16400 0.261 -1 CSRNFFLTL 9 50 579.2933891141571 NaN 0 579.292236328125 PEAK HCD FTMS 0 0 0 24390 25361.529296875 0.3906734163425773 -46 0.8474578857421875 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))SRNFFLTL_ ENST00000345985.7_1_2:10711800-10711884:-|nuORF 3.944395688203298 0.27613285122220627 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.60435 0 0 345.25815166405783 661.2262934824145 1006.4844451464724 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60435 + + 28 + NaN NaN 119041.7 NaN 19807 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24396 96.729 NaN 137310 35 0 13674 0.261 + 4261 EVIDVFEIM 9 48 547.7755854623088 NaN 0 547.7750244140625 PEAK HCD FTMS 0 0 0 24390 28019.966796875 0.3247047690526264 3 -0.06476593017578125 6 Unmodified _EVIDVFEIM_ ENSG00000100890|ENST00000534898|PRORP;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-2|PRORP;nc|ENSG00000100890|O15091-4|PRORP 14.838274106304384 0.2220448417561729 2 {I|L}E{M(Oxidation (M))|F} 3 6 23.188 0 0 2.1204 0 0 149.05295819884446 552.2674044244749 701.3203626233194 0 0 0 0 0 1 0 0 0 {I|L}E{M(Oxidation (M))|F} 2.1204 - 19 + NaN NaN 105198.3 NaN 19808 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24397 96.733 NaN 199200 35 0 38249 0.261 + -1 RPGDEWPWAC 10 40 637.2740656339083 1272.5335783346165 2 637.2745361328125 MULTI HCD FTMS 0 0 0 24390 24304.9609375 0.2119649350850211 -8 0.17624664306640625 7 Carbamidomethyl (C) _RPGDEWPWAC(Carbamidomethyl (C))_ REV__ENST00000561911.5_1_16:89619423-89623498:+|nuORF 5.731851221503515 0.44496410492002586 2 WE 2 -1 13.443 0 0 1.0564 0 0 554.2377568862609 400.15061365299067 954.3883705392516 0 0 0 0 0 0.8494850021680094 0 0 0 WE 1.0564 - 22 + NaN NaN 134317.8 NaN 19809 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24398 96.736 NaN 71454 35 0 8139.3 0.264 + 30504 VMIVIYLK 8 33 489.8057556152344 NaN 0 489.8057556152344 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _VMIVIYLK_ REV__ENSG00000130368|ENST00000674077|MAS1 0 0.38822285293237185 2 C 1 -1 1.1092 0 0 0.11371 0 0 566.3686146466813 303.1044100397094 869.4730246863908 0 0 0 0 0 0 0 0 0 C 0.11371 - 1 + NaN NaN 101434.9 NaN 19810 4586 24390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24400 96.741 NaN 193080 35 0 18781 0.327 + 22492 QRQRHVRLHQK 11 53 495.958854098594 1484.854732895982 3 496.29364013671875 MULTI HCD FTMS 0 0 0 24399 19201.447265625 0.15395959416513566 22 -0.4329681396484375 1 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.5059551277355931 0.4167017191902429 2 [{I|L}P]V 3 -1 23.952 0 0 1.6131 0 0 0 1172.6279622263132 1172.6279622263132 15.368931070804592 0 0 0 0 0 1.6989700043360187 0 0 [{I|L}P]V 1.6131 - 26 NaN NaN 125087.2 NaN 19811 4587 24399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24401 96.745 NaN 90619 35 0 8006.1 0.261 + 12295 KLPALFFLF 9 50 548.3340403732611 1094.6535278133222 2 548.755859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KLPALFFLF_ ENSG00000137628|ENST00000393743|DDX60 11.640296217721598 0.25978676193971967 2 P{M(Oxidation (M))|F} 2 7 16.995 0 0 1.5525 0 0 832.5189280592191 0 832.5189280592191 0 5.757659435244733 0 0 0 0.3807196863200844 0 0 0 P{M(Oxidation (M))|F} 1.5525 - 13 + NaN NaN 122492.3 NaN 19812 4587 24399 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24403 96.75 NaN 11409000 35 0 2071700 0.327 + 17143 LYLPSFFTY 9 81 575.79444686376 1149.5743407943198 2 575.7953491210938 MULTI HCD FTMS 0 0 0 24402 9679189 1 0 0 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 161.8943921545576 8.236690082142223E-09 2 Y{I|L}{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 2 + 110.94 0 0 9.6504 9.6504 96.859 0 0 0 35.40816854212089 16.478174818886373 16.478174818886373 20.55462187404089 0 2.8494850021680094 1.5228787452803376 2.4361818737241734 0 Y{I|L}{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]P{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}TY;[Y{I|L}]P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}{M(Oxidation (M))|F}TY;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}[VP]{I|L}{M(Oxidation (M))|F}TY;[YT]{M(Oxidation (M))|F}AYP{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}APY{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}Y{I|L} 9.6504;7.8624;7.0124;6.6419;6.0538;5.5622;5.489;5.0385;4.7766;4.7617 -;+;-;-;-;-;-;-;-;- + 1488 + NaN NaN 898358.4 NaN 19813 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24404 96.755 NaN 1027300 35 0 110540 0.261 + 17384 LYQILQGIVF 10 71 597.3501997907986 1192.685846648397 2 597.3502807617188 MULTI HCD FTMS 0 0 0 24402 2713939.75 1 0 0 2 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 99.79894945604345 0.00025031564603709316 2 [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F} 10 0 + 92.459 0 0 7.7521 7.7521 90.957 0 0 0 4.884381005764311 86.97411904393022 4.884381005764311 9.164539485499262 0 2.6989700043360187 0 0 1.5114393726401687 + + [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][KT]G[VP]G{I|L}V{M(Oxidation (M))|F};[YT][K{I|L}]G[VP]G{I|L}V{M(Oxidation (M))|F} 7.7521;6.9837;6.711;4.9511;4.5314;4.279 +;-;-;-;-;- + 452 NaN NaN 252129.1 NaN 19814 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24405 96.758 NaN 980950 35 0 186150 0.261 -1 0 61 586.7853388726219 1171.5561248120437 2 586.78564453125 MULTI HCD FTMS 0 0 0 24402 1851898 1 0 0 3 NaN NaN 2 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 84.576 0 0 7.2191 0 0 0 301.07953821353755 301.07953821353755 34.482273980920425 0 0 0 0 1.6747425010840047 1.6989700043360187 0.6382104921644451 0 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.2191 - 321 + NaN NaN 236293 NaN 19815 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24406 96.762 NaN 195170 35 0 29587 0.261 + 17504 LYTIETEQKD 10 56 620.308187069346 1238.601821205492 2 620.308349609375 MULTI HCD FTMS 0 0 0 24402 162470.15625 1 0 0 4 Unmodified _LYTIETEQKD_ REV__ENSG00000165028|ENST00000374762|NIPSNAP3B;REV__ENST00000461177.1_1_9:107526493-107533549:+|nuORF 26.268140514670165 0.2654086933305545 2 {I|L}Y{I|L}T{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}A 8 -1 78.085 0 0 6.3043 0 0 0 309.0911043756469 309.0911043756469 59.50109420336375 0 0 0 0 2.473197507588033 1.6989700043360187 0.4247425010840047 0 {I|L}Y{I|L}T{M(Oxidation (M))|F}{[MS]|[{M(Oxidation (M))|F}A]}A 6.3043 - 124 + NaN NaN 123216 NaN 19816 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24407 96.765 NaN 647110 35 0 133640 0.261 + -1 YLLVMMVCC 9 85 594.7688158489046 1187.5230787646092 2 594.76806640625 MULTI HCD FTMS 0 0 0 24402 181564.765625 1 0 0 5 2 Carbamidomethyl (C) _YLLVMMVC(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENSG00000138600|ENST00000261854|SPPL2A;REV__ENST00000559527.1_1_15:51023229-51039693:-|nuORF;REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant 20.871210003555333 0.18003371494288972 2 Y{I|L}{I|L} 3 -1 43.812 0 0 3.6894 0 0 0 795.2697847955686 795.2697847955686 10.078971335916158 0 0 0 0 0.7614393726401688 1.6989700043360187 0 0 Y{I|L}{I|L} 3.6894 + + 553 + NaN NaN 182370.1 NaN 19817 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24408 96.768 NaN 276340 35 0 66067 0.262 + 15376 LPDFPALVL 9 58 492.79172230348837 983.5688916737768 2 492.791748046875 MULTI HCD FTMS 0 0 0 24402 128091.4140625 0.5060483385595496 -7 0.14321136474609375 6 Unmodified _LPDFPALVL_ ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 25.969 0 0 2.6403 0 0 753.4065307996 0 753.4065307996 0 20.718488650264938 0 0 0 0.5 0 0 0 + V{I|L} 2.6403 + + 10 NaN NaN 129111.4 NaN 19818 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24409 96.772 NaN 99865 35 0 6122.9 0.261 + -1 RLLCLLRFRWP 11 52 510.63424010284973 1528.8808909087493 3 510.63421630859375 MULTI HCD FTMS 0 0 0 24402 29818.119140625 0.45312965613987766 -3 0.04842376708984375 7 Carbamidomethyl (C) _RLLC(Carbamidomethyl (C))LLRFRWP_ REV__ENSG00000167733|ENST00000339423|HSD11B1L;REV__ENST00000578046.1_2_19:5687695-5687953:+|nuORF;REV__ENST00000581423.1_1_19:5687386-5687953:+|nuORF;REV__nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;REV__nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;REV__nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L 0.09484139111097674 0.41850472438158626 2 {I|L}G 2 -1 10.969 0 0 0.71746 0 0 867.5411214769118 488.20806449321395 1355.7491859701258 0 0 0 0 0 0 0 0 0 {I|L}G 0.71746 - 9 + NaN NaN 97695.3 NaN 19819 4588 24402 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24411 96.776 NaN 986100 35 0 160990 0.327 + 35019 YTFHRGHLL 9 81 572.3069094774975 1142.5992660217948 2 572.3077392578125 MULTI HCD FTMS 0 0 0 24410 474829.4375 0.36760591458124564 -6 0.11679840087890625 1 Unmodified _YTFHRGHLL_ REV__ENSG00000107882|ENST00000369902|SUFU;REV__nc|ENSG00000107882|Q9UMX1-2|SUFU;REV__nc|ENSG00000107882|Q9UMX1-3|SUFU 29.081581746732265 0.1154664336125038 2 [YE]{I|L}Q{M(Oxidation (M))|F}VW 7 -1 67.622 0 0 5.9182 0 0 0 174.09184527412586 174.09184527412586 27.690775249321078 0 0 0 0 2.274227503252014 1.5228787452803376 2.138210492164445 0 [YE]{I|L}Q{M(Oxidation (M))|F}VW 5.9182 - 656 NaN NaN 253973 NaN 19820 4589 24410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24412 96.781 NaN 672700 35 0 109470 0.261 + -1 WEWRCPLL 8 94 580.2890631109541 1158.563573288708 2 580.2885131835938 MULTI HCD FTMS 0 0 0 24410 116035.3046875 0.4577568552796118 -8 0.16916656494140625 2 Carbamidomethyl (C) _WEWRC(Carbamidomethyl (C))PLL_ REV__ENST00000595288.5_1_19:7692923-7693151:-|nuORF 15.847184025352803 0.47719562709667024 2 {M(Oxidation (M))|F}A[{M(Oxidation (M))|F}T]WP{I|L}{I|L} 8 -1 31.112 0 0 2.6854 0 0 165.07817275215 0 165.07817275215 0 10.449696547303429 0 0 0 0.3054621874040891 0 0.28872548999643577 0 {M(Oxidation (M))|F}A[{M(Oxidation (M))|F}T]WP{I|L}{I|L} 2.6854 - 783 NaN NaN 195043 NaN 19821 4589 24410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24413 96.784 NaN 69306 35 0 6301.5 0.261 -1 MGSCVSRDLFT 11 35 644.7853120289427 1287.5560711246853 2 644.7855224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))GSC(Carbamidomethyl (C))VSRDLFT_ ENSG00000185519|ENST00000375662|FAM131C 4.189502756095605 0.4005469306127019 2 V{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}T] 5 -1 37.218 0 0 2.8906 0 0 662.2100762607707 0 662.2100762607707 0 32.61439372640169 0 0 0 1.5 0 0 0 V{M(Oxidation (M))|F}{I|L}[{M(Oxidation (M))|F}T] 2.8906 - 26 + NaN NaN 100691.6 NaN 19822 4589 24410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24414 96.788 NaN 86007 35 0 13684 0.264 + 23210 RFPCGPPY 8 45 468.7231750488281 NaN 0 468.7231750488281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _RFPCGPPY_ REV__ENST00000367450.7_1_1:192998689-192998773:-|nuORF 0.7936320650641473 0.38822285293237185 2 Q 1 -1 0.9691 0 0 0.1036 0 0 485.28177490058755 319.06748377017817 804.3492586707657 0 0 0 0 0 0 0 0 0 Q 0.1036 - 1 + NaN NaN 108389.3 NaN 19823 4589 24410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24416 96.793 NaN 611790 35 0 97439 0.327 + 18527 MSYFGEHFW 9 69 602.2503009179278 1202.4860489026555 2 602.2503662109375 MULTI HCD FTMS 0 0 0 24415 493033.46875 0.76659574906422 2 -0.032196044921875 1 Unmodified _MSYFGEHFW_ ENSG00000130475|ENST00000596536|FCHO1;ENST00000601247.5_1_19:17858586-17877404:+|nuORF;nc|ENSG00000130475|O14526-2|FCHO1 4.75600775471527 0.31496297302216103 2 TY 2 8 16.594 0 0 1.38 0 0 920.3619438378261 0 920.3619438378261 0 2.614393726401687 0 0 0 0.5 0 0 0 TY 1.38 - 51 NaN NaN 198712.6 NaN 19824 4590 24415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24417 96.797 NaN 522110 35 0 32628 0.261 + 11145 IYIPSYFDF 9 98 582.7840844012125 1163.5536158692248 2 582.7845458984375 MULTI HCD FTMS 0 0 0 24415 199545.125 0.8396632218103169 2 -0.032196044921875 2 Unmodified _IYIPSYFDF_ ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF 38.15118350030904 0.07383188072201104 2 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DY 9 2 + 58.31 0 0 5.0114 5.0114 83.015 0 0 0 21.12704280191288 29.98528715244923 21.12704280191288 1.5490195998574308 0 1.5669015600442577 1.3979400086720375 0 0 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DY;[Y{I|L}]{I|L}{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F}DY;[Y{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]DY;[Y{I|L}]{I|L}{[CA]|SS}[WH]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[DS]|[MA]|[CV]|TT};[Y{I|L}]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}EE{[CT]|[{M(Oxidation (M))|F}G]};{[CT]|[{M(Oxidation (M))|F}G]}WTH[RP]TY;[Y{I|L}]{I|L}P[EC][KP]{[DS]|[MA]|[CV]|TT};[{M(Oxidation (M))|F}T]{[QD]|[EN]|[WG]|[KD]|[RS]}H[RP]TY;{[CT]|[{M(Oxidation (M))|F}G]}WTH[RD][{M(Oxidation (M))|F}V] 5.0114;4.8783;3.9125;1.9246;1.7491;1.6916;1.5786;0.96529;0.51026;0.48451 -;-;-;-;-;-;-;-;-;- 1157 NaN NaN 165834.9 NaN 19825 4590 24415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24418 96.8 NaN 60167 35 0 7620.2 0.263 + 30215 VIFELLNVLFF 11 35 451.93231201171875 NaN 0 451.93231201171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VIFELLNVLFF_ REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|23 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118038.3 NaN 19826 4590 24415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24419 96.804 NaN 75328 35 0 11778 0.261 + 33314 YFSYYFTEWYL 11 42 527.9027099609375 NaN 0 527.9027099609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YFSYYFTEWYL_ REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|6 0.09484139111097674 0.34185110575506755 2 R 1 -1 0.3786 0 0 0.035928 0 0 491.51968115058736 403.1542147272094 894.6738958777968 0 0 0 0 0 0 0 0 0 R 0.035928 - 1 + NaN NaN 94981.8 NaN 19827 4590 24415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24420 96.807 NaN 156920 35 0 9549.4 0.261 + 385 AIPQGIILSLW 11 46 605.863594749451 1209.7126365657018 2 605.8629760742188 MULTI HCD FTMS 0 0 0 24415 37607.328125 1 0 0 5 Unmodified _AIPQGIILSLW_ REV__ENSG00000185000|ENST00000528718|DGAT1;REV__ENST00000524965.5_1_8:145540219-145541001:-|nuORF 4.5288652416199255 0.3990586020344083 2 [Y{I|L}]Q{I|L}{I|L}Q{[VA]|[{I|L}G]}V 9 -1 17.113 0 0 1.4146 0 0 0 179.0850982643532 179.0850982643532 4.436974992327125 0 0 0 0 0 0 0 0 [Y{I|L}]Q{I|L}{I|L}Q{[VA]|[{I|L}G]}V 1.4146 - 96 NaN NaN 129064.1 NaN 19828 4590 24415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24422 96.812 NaN 730940 35 0 97966 0.327 + 15698 LPEPYWIVL 9 57 565.3181516482758 1128.6217503633516 2 565.318115234375 MULTI HCD FTMS 0 0 0 24421 396115.5 0.08724133795797845 18 -0.36186981201171875 1 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 42.09456458481378 0.05572955244001856 2 [{I|L}P]E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L} 9 0 + 45.467 0 0 4.0286 4.0286 84.773 0 0 0 1.2270443568706924 26.0033413501521 1.2270443568706924 9.133804256408801 0 1.805462187404089 0 0 0 + + [{I|L}P]E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L};E[{I|L}P]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W{I|L}V{I|L} 4.0286;3.2193 +;- + 90 NaN NaN 201678 NaN 19829 4591 24421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24423 96.816 NaN 669220 35 0 92175 0.261 + 237 AFDLSQVLF 9 63 520.2765757054096 1038.5385984776192 2 520.2767944335938 MULTI HCD FTMS 0 0 0 24421 239515.84375 0.11170881316071304 8 -0.16210174560546875 2 Unmodified _AFDLSQVLF_ ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 67.83816525789305 0.009787749748478139 2 {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{I|L}{M(Oxidation (M))|F} 9 0 + 80.213 0 0 7.7237 7.7237 91.594 0 0 0 3.65279269351241 68.11751581724351 3.65279269351241 9.208187539523749 0 3.0114393726401687 0 0.8494850021680094 0 + + {[MS]|[{M(Oxidation (M))|F}A]}D{I|L}SQV{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}S[AG]V{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}DQV{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}D{I|L}[KA]D{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}D[AG]V{I|L}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{[TV]|[{I|L}S]}{[QV]|[N{I|L}]|[RA]|[KV]}D{I|L}{M(Oxidation (M))|F};[{I|L}V]QS[PS][YV]{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S[PS][YV]{M(Oxidation (M))|F} 7.7237;6.837;5.3176;4.6213;4.431;2.2152;1.4562;1.4562 +;-;-;-;-;-;-;- + 334 NaN NaN 188963.2 NaN 19830 4591 24421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24424 96.82 NaN 175870 35 0 14699 0.261 + 2949 DYTTWTALL 9 55 542.2713805689125 1082.528208204625 2 542.2720336914062 MULTI HCD FTMS 0 0 0 24421 48670.09375 0.13404612043849962 8 -0.16210174560546875 3 Unmodified _DYTTWTALL_ ENSG00000076382|ENST00000321765|SPAG5 39.957323273324995 0.06554068735427583 2 TA{I|L}{I|L} 4 5 34.711 0 0 3.2065 0 0 666.2645119168001 0 666.2645119168001 0 8.51342204748164 0 0 0 0.5 0 0.7059771852360797 0 + TA{I|L}{I|L} 3.2065 + + 77 NaN NaN 122388.7 NaN 19831 4591 24421 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24426 96.825 NaN 17483000 35 0 5181400 0.327 + 4483 EYIQFVPLL 9 77 561.3156922565188 1120.6168315798375 2 561.3162841796875 MULTI HCD FTMS 0 0 0 24425 5437268.5 0.45085698398288804 -3 0.04831695556640625 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 139.13845188893973 5.0762478717762276E-05 2 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 113.15 0 0 10.097 10.097 94.221 0 0 0 26.791746928241125 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6307196863200843 1.0457574905606752 2.778659694992122 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[Q{I|L}]YE{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V]QP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V][AG]P{I|L}{I|L};[YE]{I|L}Q{M(Oxidation (M))|F}V{I|L}P{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}V{I|L}P{I|L};[Q{I|L}]Y[{M(Oxidation (M))|F}V]EP{I|L}{I|L};[Q{I|L}]Y{[{M(Oxidation (M))|F}D]|MM}{I|L}P{I|L}{I|L};[{M(Oxidation (M))|F}V]{[WT]|[RM]}ET{I|L}{I|L}{I|L} 10.097;9.275;7.7059;6.6159;5.7942;5.593;4.5137;4.1136;4.0896;4.0534 +;-;-;-;-;-;-;-;-;- + 932 NaN NaN 818409 NaN 19832 4592 24425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24427 96.829 NaN 327000 35 0 48990 0.261 + 6894 FPVEFLIQV 9 60 546.3105991618448 1090.6066453904896 2 546.310791015625 MULTI HCD FTMS 0 0 0 24425 81478.984375 0.33915908218195895 2 -0.04559326171875 2 Unmodified _FPVEFLIQV_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9 18.1463463914782 0.20357593197100715 2 Q{I|L}{I|L}QV 5 5 42.691 0 0 3.9144 0 0 491.238084861525 0 491.238084861525 0 32.769250191953674 0 0 0 0.9247425010840047 0 0 0 Q{I|L}{I|L}QV 3.9144 - 174 NaN NaN 145257.1 NaN 19833 4592 24425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24428 96.833 NaN 300120 35 0 46922 0.261 + 18384 MPPWENIWL 9 43 593.2916882564286 1184.5688235796572 2 593.2919311523438 MULTI HCD FTMS 0 0 0 24425 73344.8515625 0.32621532320301944 2 -0.04559326171875 3 Unmodified _MPPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 22.736283301280096 0.1639198954644489 2 EN{I|L}W{I|L} 5 4 45.01 0 0 3.7997 0 0 511.22740370918126 0 511.22740370918126 0 40.40582692576591 0 0 0 1.0941876774005248 0 0 0 + EN{I|L}W{I|L} 3.7997 + + 66 NaN NaN 158942.8 NaN 19834 4592 24425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24429 96.836 NaN 148140 35 0 28275 0.261 + 29243 TYLNFPVLI 9 40 540.3105015283091 1078.6064501234182 2 540.3119506835938 MULTI HCD FTMS 0 0 0 24425 24076.765625 0.2699049971851926 4 -0.0910186767578125 4 Unmodified _TYLNFPVLI_ ENST00000511335.5_1_6:97720608-97720671:-|nuORF 29.081581746732265 0.1154664336125038 2 K{M(Oxidation (M))|F}[VP]{I|L}{I|L} 6 4 39.314 0 0 3.6449 0 0 363.1515370099625 0 363.1515370099625 0 33.82937987061139 0 0 0 1.5 0 0 0.28872548999643577 K{M(Oxidation (M))|F}[VP]{I|L}{I|L} 3.6449 - 57 NaN NaN 119165.6 NaN 19835 4592 24425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24430 96.839 NaN 160090 35 0 14333 0.261 + 15478 LPDLVVEIL 9 54 505.81046291682463 NaN 0 505.8109436035156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LPDLVVEIL_ ENSG00000120451|ENST00000265909|SNX19 19.256988751693697 0.19238547928067054 2 {I|L}EV 3 7 26.242 0 0 2.5993 0 0 131.09387633156547 534.2932770288314 665.387153360397 0 0 0 0 0 1.1549471895720984 0 0 0 {I|L}EV 2.5993 - 15 + NaN NaN 120600.9 NaN 19836 4592 24425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24432 96.844 NaN 1453500 35 0 378010 0.327 + 11298 IYLTFPVAMF 10 73 609.3176593529477 1216.6207657726952 2 609.3179931640625 MULTI HCD FTMS 0 0 0 24431 677574 0.45252719270352043 10 -0.2024078369140625 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 123.34 0 0 10.138 10.138 91.594 0 0 0 22.754537344402905 107.93305028184122 22.754537344402905 4.731975075880328 0 3.1307196863200843 1.6989700043360187 1.9916440611282624 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};YYVV{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[MS]|[{M(Oxidation (M))|F}A]}V{M(Oxidation (M))|F};[YT]{I|L}{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}[CS]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}V{M(Oxidation (M))|F} 10.138;9.7489;8.9096;5.9462;5.3051;5.2947;4.7422;4.3919;3.8767;3.1463 +;-;-;-;-;-;-;-;-;- + 1026 NaN NaN 317690.9 NaN 19837 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24433 96.849 NaN 431770 35 0 18052 0.263 + 22686 QWSRLRRRAGR 11 89 481.28353142384896 1440.828764871747 3 481.283447265625 MULTI HCD FTMS 0 0 0 24431 269225.59375 0.6334534008891946 2 -0.0421905517578125 2 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.1097533296519684 0.4140536653900533 2 PCP 3 -1 13.188 0 0 0.91528 0 0 564.3928040336594 576.3075655572874 1140.7003695909468 0 0 0 0 0 0 0 0 0 PCP 0.91528 - 102 + NaN NaN 148138.3 NaN 19838 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24434 96.852 NaN 325430 35 0 11107 0.261 + 23268 RGRVYRRRSRP 11 78 486.95896564295595 1457.8550675290678 3 486.9591979980469 MULTI HCD FTMS 0 0 0 24431 107079.1328125 0.5836023587430313 2 -0.0421905517578125 3 Unmodified _RGRVYRRRSRP_ REV__ENSG00000166851|ENST00000300093|PLK1 0.4545168274142398 0.41692731010159206 2 PV{M(Oxidation (M))|F} 3 -1 13.188 0 0 0.90459 0 0 599.4282895365507 512.2141207330686 1111.6424102696192 0 0 0 0 0 0 0 0 0 PV{M(Oxidation (M))|F} 0.90459 - 72 + NaN NaN 138976.1 NaN 19839 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24435 96.856 NaN 827480 35 0 88963 0.261 + 35823 YYPSFLPYF 9 72 598.786878677481 1195.559204421762 2 598.7869873046875 MULTI HCD FTMS 0 0 0 24431 177517.6875 0.3057632349455139 -4 0.067779541015625 4 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 60.38955033654506 0.017036522530421875 2 YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F} 9 0 + 57.866 0 0 4.84 4.84 83.736 0 0 0 17.364167856113113 44.75649969964586 17.364167856113113 3.979400086720375 0 2.0994850021680094 1.3979400086720375 0.6747425010840047 0 + + YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F};YY[PS]{M(Oxidation (M))|F}{I|L}P{M(Oxidation (M))|F}Y 4.84;4.5072 +;- + 293 NaN NaN 233728.1 NaN 19840 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24436 96.859 NaN 389720 35 0 61741 0.261 + 15894 LPLLLDFSW 9 65 552.3105320796473 1102.6065112260944 2 552.3104248046875 MULTI HCD FTMS 0 0 0 24431 61753.8125 0.5719891126162848 -1 0.01946258544921875 5 Unmodified _LPLLLDFSW_ REV__ENSG00000120868|ENST00000551964|APAF1;REV__nc|ENSG00000120868|O14727-2|APAF1;REV__nc|ENSG00000120868|O14727-3|APAF1;REV__nc|ENSG00000120868|O14727-4|APAF1 30.224811164608877 0.11021837014094292 2 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 6 -1 65.795 0 0 5.9672 0 0 387.1787281720719 0 387.1787281720719 0 23.883578386120234 0 0 0 2.305462187404089 0 0 0.6109243748081782 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 5.9672 - 294 NaN NaN 165668.9 NaN 19841 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24437 96.862 NaN 227360 35 0 63087 0.261 + 1004 AYFNFPELL 9 41 557.284304073753 1112.554055214306 2 557.2855224609375 MULTI HCD FTMS 0 0 0 24431 36887.43359375 0.0006068132313397789 69 -1.378875732421875 6 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 27.628801355627647 0.12213550946336599 2 T{M(Oxidation (M))|F}PE{I|L}{I|L} 6 4 36.176 0 0 3.2516 0 0 394.1719273840309 0 394.1719273840309 0 36.17599686953518 0 0 0 1.7302046884880937 0 0 0 T{M(Oxidation (M))|F}PE{I|L}{I|L} 3.2516 - 22 + NaN NaN 130417.5 NaN 19842 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24438 96.865 NaN 80977 35 0 9470.4 0.261 + 20416 PAALTGRRRRQ 11 39 641.3846908429772 1280.7548287527543 2 641.3849487304688 MULTI HCD FTMS 0 0 0 24431 37049.7421875 0.2641724044423876 -9 0.17160797119140625 7 Unmodified _PAALTGRRRRQ_ ENST00000261951.8_1_5:179921647-179956302:+|nuORF;ENST00000393356.5_1_5:179921647-179922490:+|nuORF 1.0714618166137932 0.41422159895841093 2 {M(Oxidation (M))|F} 1 11 1.9897 0 0 0.15535 0 0 686.4312946724793 444.22397791080317 1130.6552725832826 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.15535 - 3 + NaN NaN 100972 NaN 19843 4593 24431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24440 96.87 NaN 167560 35 0 30405 0.327 + 6243 FPEVDVFVL 9 42 532.7865657404676 1063.5585785477351 2 532.787353515625 MULTI HCD FTMS 0 0 0 24439 58659.078125 0.4531164192348664 -1 0.02613067626953125 1 Unmodified _FPEVDVFVL_ ENSG00000132768|ENST00000255108|DPH2;nc|ENSG00000132768|Q9BQC3-3|DPH2 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F}V{I|L} 3 6 33.94 0 0 3.1912 0 0 686.327887231246 0 686.327887231246 0 31.46591250700361 0 0 0 0.7742275032520141 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.1912 + + 41 NaN NaN 122420.1 NaN 19844 4594 24439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24441 96.875 NaN 124840 35 0 20537 0.261 + 27272 SYPNVFLVF 9 41 543.2870087051799 1084.5594644771597 2 543.2877197265625 MULTI HCD FTMS 0 0 0 24439 54604.47265625 0.019176063159320716 40 -0.7918853759765625 2 Unmodified _SYPNVFLVF_ ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B 21.536976647645854 0.1742816388551942 2 {M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 4 5 41.414 0 0 3.8185 0 0 560.2581562213622 0 560.2581562213622 0 35.929862658764264 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}V{M(Oxidation (M))|F} 3.8185 + + 18 NaN NaN 113491.8 NaN 19845 4594 24439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24442 96.878 NaN 107480 35 0 18678 0.261 + 14827 LITDILDTF 9 28 525.7894750196521 1049.564397106104 2 525.7894287109375 MULTI HCD FTMS 0 0 0 24439 64632.48046875 0.10011342171983277 11 -0.20874786376953125 3 Unmodified _LITDILDTF_ ENSG00000103544|ENST00000417362|VPS35L 19.256988751693697 0.19398022840297344 2 {I|L}DT{M(Oxidation (M))|F} 4 5 41.938 0 0 3.9958 0 0 555.3259863697613 0 555.3259863697613 0 36.251837901751 0 0 0 1 0 0 0 + {I|L}DT{M(Oxidation (M))|F} 3.9958 + + 10 NaN NaN 106692 NaN 19846 4594 24439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24443 96.882 NaN 157390 35 0 15796 0.261 -1 0 68 469.83035827666174 937.6461636201235 2 469.8303527832031 MULTI HCD FTMS 0 0 0 24439 59963.49609375 0.3608877855676059 -5 0.09391021728515625 4 NaN NaN 2 Q{I|L} 2 -1 17.959 0 0 1.9153 0 0 678.5054188459 0 678.5054188459 0 9.221675119240516 0 0 0 0 0 0 0 Q{I|L} 1.9153 - 16 NaN NaN 109349.9 NaN 19847 4594 24439 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24445 96.886 NaN 5747500 35 0 1045200 0.327 + 17144 LYLPSFFTY 9 93 575.79444686376 1149.5743407943198 2 575.794677734375 MULTI HCD FTMS 0 0 0 24444 3301688.5 0.34111210143742415 7 -0.14070892333984375 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 170.55093314911917 3.526520053928E-09 2 [Y{I|L}]{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F}TY 9 0 + 91.716 0 0 7.9782 7.9782 93.062 0 0 0 4.9446002741624255 21.344311064170057 4.9446002741624255 10.440680443502771 0 2.9386218330464624 1.5228787452803376 1.1237125054200234 0 + + [Y{I|L}]{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F}TY;[Y{I|L}]P{I|L}S{M(Oxidation (M))|F}{M(Oxidation (M))|F}TY;[Y{I|L}]PS{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}Y[PA]{M(Oxidation (M))|F}TY;[Y{I|L}]PS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}TY;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}SP{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}[VP]{I|L}{M(Oxidation (M))|F}TY;[YT]{M(Oxidation (M))|F}AYP{I|L}{I|L}Y;[Y{I|L}]PS{M(Oxidation (M))|F}{M(Oxidation (M))|F}T{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}SP{I|L}{I|L}Y 7.9782;7.07;6.5762;6.2114;5.364;5.3219;5.0029;4.9758;4.7116;4.6378 +;-;-;-;-;-;-;-;-;- + 2693 NaN NaN 858522.6 NaN 19848 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24446 96.891 NaN 945220 35 0 93598 0.261 + 17385 LYQILQGIVF 10 65 597.3501997907986 1192.685846648397 2 597.3502807617188 MULTI HCD FTMS 0 0 0 24444 1050151.875 0.38694737972720283 7 -0.14070892333984375 2 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 99.79894945604345 0.00025031564603709316 2 [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F} 10 0 + 99.293 0 0 8.3252 8.3252 91.853 0 0 0 17.894680962404124 92.05788253186937 17.894680962404124 9.164539485499262 0 2.638210492164445 1.3010299956639813 0 1.1307196863200843 + + [Y{I|L}]Q{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}QG{I|L}V{M(Oxidation (M))|F};{[VA]|[{I|L}G]}V{M(Oxidation (M))|F}T{I|L}QG{I|L}V{M(Oxidation (M))|F};[Y{I|L}][AG]{I|L}{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};{[VA]|[{I|L}G]}V{M(Oxidation (M))|F}T{I|L}[AG]G{I|L}V{M(Oxidation (M))|F};[Y{I|L}]Q[KS][VP]{I|L}V{M(Oxidation (M))|F};{[VA]|[{I|L}G]}V[Q{I|L}][{M(Oxidation (M))|F}T]G{I|L}V{M(Oxidation (M))|F} 8.3252;7.5568;7.2841;6.252;5.8434;4.8113;3.6707;3.0512 +;-;-;-;-;-;-;- + 460 NaN NaN 235436.1 NaN 19849 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24447 96.894 NaN 1167700 35 0 202880 0.261 -1 0 81 586.7853388726219 1171.5561248120437 2 586.7857666015625 MULTI HCD FTMS 0 0 0 24444 460274.21875 0.24854188446123923 7 -0.14070892333984375 3 NaN NaN 2 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 82.683 0 0 7.0575 0 0 0 301.0800875299438 301.0800875299438 38.157978556393815 0 0 0 0 1.75 1.6989700043360187 0.6747425010840047 0 {I|L}Y{I|L}PS{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7.0575 - 474 + NaN NaN 269413.1 NaN 19850 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24448 96.898 NaN 954070 35 0 181920 0.261 + 305 AFPEIFYTF 9 84 567.7787354088067 1133.5429178844133 2 567.7789306640625 MULTI HCD FTMS 0 0 0 24444 412489.625 0.41685421893923724 -9 0.17473602294921875 4 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 100.37149154755038 0.004254194004462789 2 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 8 7 62.107 0 0 5.479 0 0 165.07888991523595 0 165.07888991523595 0 42.863955544032834 0 0 0 1.8371804965004639 0 1.0114393726401687 0 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 5.479 - 649 NaN NaN 237540.6 NaN 19851 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24449 96.901 NaN 1080900 35 0 154100 0.261 + 35824 YYPSFLPYF 9 79 598.786878677481 1195.559204421762 2 598.786865234375 MULTI HCD FTMS 0 0 0 24444 264566.71875 0.45569980616111816 -2 0.0421905517578125 5 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 67.34385681178166 0.00994769994983633 2 YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F} 9 0 + 71.194 0 0 5.9549 5.9549 92.901 0 0 0 17.202161906808243 14.77461942958385 14.77461942958385 45.17628396928333 0 2.2059771852360797 1.3979400086720375 0.7742275032520141 0 + + YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F};YY{[QN]|[E{I|L}]|[KN]}[W{I|L}]Y{M(Oxidation (M))|F};[Y{I|L}][YE][W{I|L}]Y{M(Oxidation (M))|F} 5.9549;2.1762;0.84784 +;-;- + 341 NaN NaN 259959 NaN 19852 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24450 96.904 NaN 607670 35 0 126460 0.261 + -1 MMCTSLHAF 9 56 565.2274021493782 1128.4402513655564 2 565.2276000976562 MULTI HCD FTMS 0 0 0 24444 189561.671875 0.7849217122573903 -3 0.06165313720703125 6 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TSLHAF_ REV__ENST00000282020.8_1_4:94006286-94006370:+|nuORF 7.910154910731844 0.2910521888787154 2 A{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5443 0 0 892.3242978516877 0 892.3242978516877 0 15.523787536356577 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.5443 + + 48 + NaN NaN 179418.3 NaN 19853 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24451 96.908 NaN 393430 35 0 51599 0.261 + 11733 KDEKRKLERQR 11 65 495.958854098594 1484.854732895982 3 495.9587097167969 MULTI HCD FTMS 0 0 0 24444 15302.0439453125 0.121457927060069 32 -0.6490936279296875 7 Unmodified _KDEKRKLERQR_ SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant 2.4347853303010236 0.4082425251555256 2 [{I|L}P]V{M(Oxidation (M))|F}CCVP 8 11 34.87 0 0 2.3484 0 0 0 623.40498975879 623.40498975879 21.771081482726373 0 0 0 0 0 2 0 0 [{I|L}P]V{M(Oxidation (M))|F}CCVP 2.3484 - 118 NaN NaN 152575.6 NaN 19854 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24452 96.911 NaN 203680 35 0 21303 0.261 -1 0 63 469.83035827666174 937.6461636201235 2 469.83062744140625 MULTI HCD FTMS 0 0 0 24444 61412.76953125 0.36961017694924925 -4 0.07436370849609375 8 NaN NaN 2 {I|L}{I|L}{I|L}{I|L}{I|L}{I|L} 6 -1 24.831 0 0 2.6482 0 0 241.13069350410314 0 241.13069350410314 0 22.356537694451575 0 0 0 1.6237125054200234 0 0 0 {I|L}{I|L}{I|L}{I|L}{I|L}{I|L} 2.6482 - 50 NaN NaN 122021 NaN 19855 4595 24444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24454 96.916 NaN 2984500 35 0 501560 0.327 + 35020 YTFHRGHLL 9 104 572.3069094774975 1142.5992660217948 2 572.3070678710938 MULTI HCD FTMS 0 0 0 24453 668696.4375 0.517694873297337 1 -0.0194549560546875 1 Unmodified _YTFHRGHLL_ REV__ENSG00000107882|ENST00000369902|SUFU;REV__nc|ENSG00000107882|Q9UMX1-2|SUFU;REV__nc|ENSG00000107882|Q9UMX1-3|SUFU 30.636539890814138 0.10832830463492794 2 [YE]{I|L}Q{M(Oxidation (M))|F}VP 7 -1 72.842 0 0 6.3751 0 0 0 263.1403176177511 263.1403176177511 19.607208358087306 0 0 0 0 2.56295299324845 1.5228787452803376 2.555462187404089 0 [YE]{I|L}Q{M(Oxidation (M))|F}VP 6.3751 - 2143 NaN NaN 555372.9 NaN 19856 4596 24453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24455 96.92 NaN 1541800 35 0 473120 0.261 -1 0 73 586.7853388726219 1171.5561248120437 2 587.771728515625 MULTI HCD FTMS 0 0 0 24453 35130.84765625 0.08936500002980988 8 -0.150360107421875 2 NaN NaN 2 [Y{I|L}]{I|L}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))S]{I|L}Y 8 -1 46.119 0 0 3.9366 0 0 0 109.05576148337641 109.05576148337641 30.088643834802152 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [Y{I|L}]{I|L}{M(Oxidation (M))|F}[C(Carbamidomethyl (C))S]{I|L}Y 3.9366 - 297 NaN NaN 327821.2 NaN 19857 4596 24453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24456 96.924 NaN 774060 35 0 116340 0.261 + 31533 VYGIFNSVLF 10 86 579.8131579931927 1157.6117630531853 2 579.8135375976562 MULTI HCD FTMS 0 0 0 24453 116302.234375 0.24288449424791964 -1 0.02936553955078125 3 Unmodified _VYGIFNSVLF_ ADC-ISOC1|1|fusion;ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2 103.35351024395868 5.937367541898016E-05 2 T[DN]SV{I|L}{M(Oxidation (M))|F} 7 5 49.6 0 0 4.2847 0 0 363.21199233222814 0 363.21199233222814 0 24.166980210448102 0 0 0 1.2302046884880937 0 0.6747425010840047 1.1861818737241734 T[DN]SV{I|L}{M(Oxidation (M))|F} 4.2847 - 892 NaN NaN 228963.4 NaN 19858 4596 24453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24457 96.927 NaN 78185 35 0 9919.3 0.261 + 17457 LYSITYFWF 9 36 620.308187069346 1238.601821205492 2 620.3080444335938 MULTI HCD FTMS 0 0 0 24453 28767.54296875 0.17706355205619492 8 -0.150360107421875 4 Unmodified _LYSITYFWF_ REV__ENSG00000134160|ENST00000256552|TRPM1;REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2-3|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2-5|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2|TRPM1 7.910154910731844 0.2910521888787154 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 46.466 0 0 3.7515 0 0 0 598.2327974908811 598.2327974908811 40.98136244196333 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 3.7515 - 10 + NaN NaN 118998.5 NaN 19859 4596 24453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24458 96.93 NaN 306480 35 0 37221 0.262 + 34512 YPFPVPPLL 9 46 521.8024391193347 NaN 0 521.8019409179688 PEAK HCD FTMS 0 0 0 24453 61730.515625 0.49413344012919563 8 -0.150360107421875 5 Unmodified _YPFPVPPLL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 14.581692164780916 0.22376707489839515 2 PT 2 8 12.959 0 0 1.2441 0 0 341.23139083456937 499.2332996554383 840.4646904900077 0 0 0 0 0 0.5 0 0 0 PT 1.2441 - 7 + NaN NaN 139160.3 NaN 19860 4596 24453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24460 96.935 NaN 1052300 35 0 157240 0.327 + -1 WEWRCPLL 8 100 580.2890631109541 1158.563573288708 2 580.2894897460938 MULTI HCD FTMS 0 0 0 24459 253486.765625 1 0 0 1 Carbamidomethyl (C) _WEWRC(Carbamidomethyl (C))PLL_ REV__ENST00000595288.5_1_19:7692923-7693151:-|nuORF 21.74664581756881 0.4337896562907935 2 {I|L}VS[DN]SV{I|L}{M(Oxidation (M))|F} 9 -1 46.41 0 0 4.0058 0 0 166.03057749007138 0 166.03057749007138 0 18.222281142179213 0 0 0 0 0 0.6307196863200843 1.1307196863200843 {I|L}VS[DN]SV{I|L}{M(Oxidation (M))|F} 4.0058 - 1683 + NaN NaN 253327.1 NaN 19861 4597 24459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24461 96.94 NaN 242690 35 0 36119 0.261 -1 QPGDNVEVCEG 11 47 602.2503009179278 1202.4860489026555 2 602.2513427734375 MULTI HCD FTMS 0 0 0 24459 147094.34375 0.22871043403205296 9 -0.18331146240234375 2 Carbamidomethyl (C) _QPGDNVEVC(Carbamidomethyl (C))EG_ ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant 2.0860074813731053 0.4097721463192591 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.33093 0 0 118.02704430604884 934.3675184393992 1052.394562745448 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33093 - 4 + NaN NaN 133652.8 NaN 19862 4597 24459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24462 96.943 NaN 107730 35 0 19828 0.262 + -1 KRRQLCVRKLM 11 45 510.63424010284973 1528.8808909087493 3 510.6346740722656 MULTI HCD FTMS 0 0 0 24459 31106.400390625 0.47270696204139656 6 -0.11139678955078125 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97012.1 NaN 19863 4597 24459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24463 96.947 NaN 99825 35 0 12716 0.261 + 17458 LYSITYFWF 9 46 620.308187069346 1238.601821205492 2 620.3056030273438 MULTI HCD FTMS 0 0 0 24459 81904.859375 0.5041224878799857 9 -0.18331146240234375 4 Unmodified _LYSITYFWF_ REV__ENSG00000134160|ENST00000256552|TRPM1;REV__ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2-3|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2-5|TRPM1;REV__nc|ENSG00000134160|Q7Z4N2|TRPM1 7.910154910731844 0.2910521888787154 2 [Y{I|L}]{I|L}T 4 -1 40.445 0 0 3.2654 0 0 0 745.3015230768186 745.3015230768186 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]{I|L}T 3.2654 - 13 + NaN NaN 119112.2 NaN 19864 4597 24459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24465 96.951 NaN 11791000 35 0 3563700 0.327 + 4484 EYIQFVPLL 9 78 561.3156922565188 1120.6168315798375 2 561.3167114257812 MULTI HCD FTMS 0 0 0 24464 8004994 0.6637721590613218 3 -0.052947998046875 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 139.13845188893973 5.0762478717762276E-05 2 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 113.53 0 0 10.131 10.131 94.247 0 0 0 25.595376907252984 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6549471895720984 1.0457574905606752 2.7931576817365436 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[Q{I|L}]YE{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V]QP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V][AG]P{I|L}{I|L};[YE]{I|L}Q{M(Oxidation (M))|F}V{I|L}P{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}V{I|L}P{I|L};[Q{I|L}]Y{[{M(Oxidation (M))|F}D]|MM}{I|L}P{I|L}{I|L};[Q{I|L}]Y[{M(Oxidation (M))|F}V]EP{I|L}{I|L};[{M(Oxidation (M))|F}V]{[WT]|[RM]}ET{I|L}{I|L}{I|L} 10.131;9.3095;7.8472;6.6504;5.8287;5.6795;4.6001;4.2765;4.2549;4.0016 +;-;-;-;-;-;-;-;-;- + 939 NaN NaN 858349.6 NaN 19865 4598 24464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24466 96.956 NaN 151830 35 0 24837 0.261 + 21350 PTFTPLPVL 9 43 492.79172230348837 983.5688916737768 2 492.7920837402344 MULTI HCD FTMS 0 0 0 24464 111831.171875 0.44180930580482225 3 -0.052947998046875 2 Unmodified _PTFTPLPVL_ ENST00000548943.1_1_12:106565027-106566212:+|nuORF 7.289230182591677 0.29575926068275815 2 V{I|L} 2 7 25.969 0 0 2.6403 0 0 753.4050759193349 0 753.4050759193349 0 23.72878860690475 0 0 0 0.5 0 0 0 + V{I|L} 2.6403 + + 11 NaN NaN 114734.9 NaN 19866 4598 24464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24467 96.959 NaN 63269 35 0 5292.2 0.261 + -1 VTMKELKQV 9 39 546.3105991618448 1090.6066453904896 2 546.3110961914062 MULTI HCD FTMS 0 0 0 24464 19224.35546875 0.0800220425712808 8 -0.16716766357421875 3 Oxidation (M) _VTM(Oxidation (M))KELKQV_ REV__ANKRD30B|p.A156Qfs*37|1|0.26|ENSG00000180777|chr18:14752967-14752967|G/-|frameshift_variant;REV__ENSG00000180777|ENST00000690538|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B 3.2813086475875832 0.32614229037259 2 QV 2 -1 20.969 0 0 1.9227 0 0 845.4701622249844 0 845.4701622249844 0 20.969100130080562 0 0 0 0 0 0 0 QV 1.9227 + + 6 NaN NaN 97312.3 NaN 19867 4598 24464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24468 96.963 NaN 231020 35 0 15549 0.261 + 17417 LYRGADEPLF 10 74 590.8033874888881 1179.5922220445761 2 590.8045654296875 MULTI HCD FTMS 0 0 0 24464 17030.0625 0.2118571085494483 1 -0.02277374267578125 4 Unmodified _LYRGADEPLF_ REV__ENSG00000160867|ENST00000292408|FGFR4;REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF;REV__nc|ENSG00000160867|P22455-2|FGFR4 17.11289562659939 0.35104376501799556 2 [YV]G{I|L}Q{I|L}TW[NS] 10 -1 + 55.529 0 0 4.7075 4.7075 88.882 0 0 0 14.599549814380673 24.28666248215635 14.599549814380673 16.154239528859435 0 1 2 0 0.6989700043360187 [YV]G{I|L}Q{I|L}TW[NS];[YV]G{I|L}[AG]{I|L}TW[NS];[YV]G{I|L}[WE][PG]{I|L}{M(Oxidation (M))|F};[YV]G{I|L}[WE]{[VA]|[{I|L}G]}P{M(Oxidation (M))|F};VY{[VA]|[{I|L}G]}[WE]{I|L}GP{M(Oxidation (M))|F};[Y{I|L}][VG]Q{I|L}TW[NS];[Y{I|L}]{I|L}[NG]{I|L}TW[NS];[YV]G{I|L}[WE][KT]{[QG]|[NA]};[YV]G{I|L}[WE][QT][KG];[Y{I|L}][VG][AG]{I|L}TW[NS] 4.7075;3.338;3.3355;2.8911;2.831;2.488;2.2134;1.7254;1.7254;1.1185 -;-;-;-;-;-;-;-;-;- 317 NaN NaN 117472 NaN 19868 4598 24464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24469 96.966 NaN 100130 35 0 8047.6 0.261 + 4420 EYGAILSFF 9 42 523.7628173828125 NaN 0 523.7628173828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EYGAILSFF_ ENSG00000136381|ENST00000258886|IREB2 20.453626601364224 0.18435338882370536 2 {M(Oxidation (M))|F}S{I|L} 3 8 28.06 0 0 2.6838 0 0 165.07791505774316 530.2254122369749 695.303327294718 0 0 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}S{I|L} 2.6838 - 9 + NaN NaN 103797.4 NaN 19869 4598 24464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24470 96.969 NaN 114310 35 0 14277 0.261 + 12034 KIDYLYLFYLL 11 39 488.61051382957544 1462.8097120889263 3 489.3085021972656 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KIDYLYLFYLL_ tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1 1.214830529360525 0.41359283248740725 2 {I|L}VC[VS]V{I|L}{I|L} 8 8 26.643 0 0 1.8214 0 0 618.3069787899013 0 618.3069787899013 0 26.64320017660792 0 0 0 0 0 0.4247425010840047 0 {I|L}VC[VS]V{I|L}{I|L} 1.8214 - 34 + NaN NaN 114435.2 NaN 19870 4598 24464 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24472 96.974 NaN 74468 35 0 4467.7 0.411 + 6895 FPVEFLIQV 9 48 546.3105991618448 1090.6066453904896 2 546.8121337890625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FPVEFLIQV_ ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9;nc|ENSG00000183814|Q5TKA1-3|LIN9 10.073929032068715 0.27331982688540024 2 {I|L}QV 3 6 30.445 0 0 2.7916 0 0 732.381151267775 0 732.381151267775 0 23.455612550363796 0 0 0 0.4247425010840047 0 0 0 + {I|L}QV 2.7916 + + 12 NaN NaN 109399.3 NaN 19871 4599 24471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24474 96.981 NaN 926770 35 0 243200 0.327 + 11299 IYLTFPVAMF 10 66 609.3176593529477 1216.6207657726952 2 609.3185424804688 MULTI HCD FTMS 0 0 0 24473 539981 0.360633799471703 17 -0.37177276611328125 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 121.38 0 0 9.9768 9.9768 91.411 0 0 0 20.993624753846092 108.98448453280515 20.993624753846092 4.515449934959719 0 3.110924374808178 1.5228787452803376 1.9916440611282624 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}P{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}P{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T][Y{I|L}]{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};YYVV{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}P{[ES]|[DT]|[{I|L}C]}T{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9.9768;9.6057;8.6637;6.6607;6.2896;5.93;5.4781;5.3476;5.1604;4.5812 +;-;-;-;-;-;-;-;-;- + 801 NaN NaN 248202 NaN 19872 4600 24473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24475 96.986 NaN 307040 35 0 15727 0.263 + 22687 QWSRLRRRAGR 11 82 481.28353142384896 1440.828764871747 3 481.28375244140625 MULTI HCD FTMS 0 0 0 24473 224686.015625 0.5286574680639884 9 -0.19223785400390625 2 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.1097533296519684 0.4140536653900533 2 N{[HG]|PP}N 4 -1 15.846 0 0 1.0998 0 0 1000.5705433576187 0 1000.5705433576187 0 9.124628150806373 0 0 0 0.805462187404089 0 0 0 N{[HG]|PP}N 1.0998 - 24 NaN NaN 139075.8 NaN 19873 4600 24473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24476 96.989 NaN 292860 35 0 45242 0.261 + 18385 MPPWENIWL 9 51 593.2916882564286 1184.5688235796572 2 593.2918090820312 MULTI HCD FTMS 0 0 0 24473 107618.59375 0.4786543785270981 10 -0.21822357177734375 3 Unmodified _MPPWENIWL_ ENSG00000174437|ENST00000539276|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2 26.268140514670165 0.13340543277302316 2 EN{I|L}W{I|L} 5 4 50.93 0 0 4.2994 0 0 511.2250233380875 0 511.2250233380875 0 41.97743773147742 0 0 0 1.5356668758921828 0 0 0 + EN{I|L}W{I|L} 4.2994 + + 94 NaN NaN 152528.6 NaN 19874 4600 24473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24477 96.993 NaN 167300 35 0 6623.4 0.262 + -1 FSRLNRRRRR 10 67 486.95896564295595 1457.8550675290678 3 487.2937927246094 MULTI HCD FTMS 0 0 0 24473 45858.16796875 0.3331739978038317 9 -0.19223785400390625 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FSRLNRRRRR_ REV__ENSG00000072315|ENST00000262839|TRPC5;REV__TRPC5|p.G689R|1|0.24|ENSG00000072315|chrX:111781970-111781970|C/G|missense_variant 0.15932191953741626 0.4744603884079788 2 PV 2 -1 9.464 0 0 0.64917 0 0 599.4290573140039 659.2838327750148 1258.7128900890189 0 0 0 0 0 0 0 0 0 PV 0.64917 - 18 + NaN NaN 117031.5 NaN 19875 4600 24473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24478 96.996 NaN 201040 35 0 26713 0.261 + 10251 IIPQEPFLF 9 55 552.3105320796473 1102.6065112260944 2 552.3115844726562 MULTI HCD FTMS 0 0 0 24473 63285.66015625 0.5861777132239279 6 -0.13686370849609375 5 Unmodified _IIPQEPFLF_ ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 21.74664581756881 0.17247014374749275 2 Q{M(Oxidation (M))|F}V[{I|L}P]{I|L} 6 7 40.947 0 0 3.7137 0 0 387.17875868965 0 387.17875868965 0 18.76332724166332 0 0 0 1.8807196863200843 0 0 0 Q{M(Oxidation (M))|F}V[{I|L}P]{I|L} 3.7137 - 127 NaN NaN 123639.4 NaN 19876 4600 24473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24479 96.999 NaN 102720 35 0 6781.5 0.261 + 35276 YVVAWGEIPF 10 47 590.8033874888881 1179.5922220445761 2 590.8021850585938 MULTI HCD FTMS 0 0 0 24473 52328.23828125 0.6509729049879986 3 -0.06494903564453125 6 Unmodified _YVVAWGEIPF_ REV__ENSG00000148358|ENST00000347136|GPR107;REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF;REV__nc|ENSG00000148358|Q5VW38|GPR107 9.38312468134398 0.42334543440173333 2 P{M(Oxidation (M))|F} 2 -1 22.959 0 0 1.9463 0 0 917.4599955158136 0 917.4599955158136 0 15.969100130080562 0 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 1.9463 + + 7 NaN NaN 108703.8 NaN 19877 4600 24473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24481 97.004 NaN 222910 35 0 54538 0.327 + 30195 VHQDTYRQIH 10 45 432.8851910714669 NaN 0 432.8852233886719 PEAK HCD FTMS 0 0 0 24480 114694.6796875 0.4533824195109743 78 -1.5211257934570312 1 Unmodified _VHQDTYRQIH_ ENSG00000054611|ENST00000337137|TBC1D22A;nc|ENSG00000054611|Q8WUA7-2|TBC1D22A;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion 0.6268255596534771 0.33964781322640114 2 R 1 9 0.3786 0 0 0.043832 0 0 311.43302755133385 393.1908053033813 704.6238328547151 0 0 0 0 0 0 0 0 0 + R 0.043832 + + 1 + NaN NaN 126321.5 NaN 19878 4601 24480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24482 97.009 NaN 186460 35 0 25844 0.261 + 22506 QRRRRGTLAAP 11 58 641.3846908429772 1280.7548287527543 2 641.3848876953125 MULTI HCD FTMS 0 0 0 24480 120186.3203125 0.8569535803341706 -1 0.02264404296875 2 Unmodified _QRRRRGTLAAP_ REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF;REV__ENST00000393356.5_1_5:179921647-179922490:+|nuORF 2.735195868890462 0.4069250265843076 2 R 1 -1 3.6312 0 0 0.28352 0 0 684.4070026802918 437.2364596002563 1121.6434622805482 0 0 0 0 0 0.3252574989159953 0 0 0 R 0.28352 + + 5 + NaN NaN 132957.2 NaN 19879 4601 24480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24483 97.012 NaN 172540 35 0 44410 0.262 + 6244 FPEVDVFVL 9 40 532.7865657404676 1063.5585785477351 2 532.7872924804688 MULTI HCD FTMS 0 0 0 24480 122272.0625 0.9444996563771311 6 -0.13047027587890625 3 Unmodified _FPEVDVFVL_ ENSG00000132768|ENST00000255108|DPH2;nc|ENSG00000132768|Q9BQC3-3|DPH2 10.823927491677226 0.26684000660059787 2 V{M(Oxidation (M))|F}V{I|L} 4 5 37.691 0 0 3.5438 0 0 587.2642689435562 0 587.2642689435562 0 32.2062251842808 0 0 0 0.9247425010840047 0 0 0 + V{M(Oxidation (M))|F}V{I|L} 3.5438 + + 13 NaN NaN 110369.9 NaN 19880 4601 24480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24484 97.016 NaN 132500 35 0 28884 0.261 + 1005 AYFNFPELL 9 41 557.284304073753 1112.554055214306 2 557.28466796875 MULTI HCD FTMS 0 0 0 24480 54905.7734375 0.0009032222237457126 77 -1.5016250610351562 4 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F} 1 8 9.6041 0 0 0.86325 0 0 470.2738479767092 492.18869959049067 962.4625475671999 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.86325 + + 4 + NaN NaN 107606.8 NaN 19881 4601 24480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24485 97.019 NaN 104380 35 0 12617 0.261 + 7730 FYLSLVPQI 9 41 540.3100422431654 1078.6055315531307 2 540.3106689453125 MULTI HCD FTMS 0 0 0 24480 47067.59765625 0.6025144151762784 -4 0.069091796875 5 Unmodified _FYLSLVPQI_ REV__ENST00000446382.2_1_9:6834760-6835018:+|nuORF 10.823927491677226 0.26684000660059787 2 D[NP]{I|L}{I|L} 5 -1 18.812 0 0 1.7441 0 0 508.3038502423844 0 508.3038502423844 0 4.832881222565248 0 0 0 0.5 0 0 0 D[NP]{I|L}{I|L} 1.7441 - 6 NaN NaN 107969.6 NaN 19882 4601 24480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24486 97.022 NaN 64508 35 0 4650.1 0.261 -1 AMLLYTLTF 9 43 544.7872314453125 NaN 0 544.7872314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _AM(Oxidation (M))LLYTLTF_ ENSG00000103335|ENST00000301015|PIEZO1 11.640296217721598 0.23883959125015683 2 T{I|L}[DN]T{I|L}T 7 -1 22.963 0 0 2.1115 0 0 164.08885204902487 162.05503259830314 326.14388464732804 0 0 0 0 0 0.4247425010840047 0 0 0 T{I|L}[DN]T{I|L}T 2.1115 - 63 + NaN NaN 95994.7 NaN 19883 4601 24480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24488 97.027 NaN 738610 35 0 128770 0.327 + 17145 LYLPSFFTY 9 71 575.79444686376 1149.5743407943198 2 575.7946166992188 MULTI HCD FTMS 0 0 0 24487 313516.1875 0.03239074962788721 14 -0.3001251220703125 1 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 170.55093314911917 3.526520053928E-09 2 [Y{I|L}]{I|L}PAY{M(Oxidation (M))|F}TY 9 2 + 82.885 0 0 7.21 7.21 95.462 0 0 0 3.0100783891267895 59.239573281665486 3.0100783891267895 58.34894809421752 0 2.774227503252014 1.5228787452803376 0.3494850021680094 0 [Y{I|L}]{I|L}PAY{M(Oxidation (M))|F}TY;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]YA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}Y{I|L};[{M(Oxidation (M))|F}T]YA{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Y{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}Y{I|L};[YT]{M(Oxidation (M))|F}A{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}Y{I|L} 7.21;2.1343;1.9812;1.828;1.6748;0.78736;0.63418;0.481;0.32782 -;-;-;-;-;-;-;-;- 350 NaN NaN 205966.9 NaN 19884 4602 24487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24489 97.032 NaN 500420 35 0 45846 0.261 + 17386 LYQILQGIVF 10 57 597.3501997907986 1192.685846648397 2 597.350341796875 MULTI HCD FTMS 0 0 0 24487 39419.72265625 0.01452490706776007 14 -0.3001251220703125 2 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 45.69961567697781 0.09594615698576985 2 {I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 7 3 56.458 0 0 4.7337 0 0 404.20559412022254 0 404.20559412022254 0 50.97373228030179 0 0 0 2.3494850021680094 0 0 0.4247425010840047 + {I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 4.7337 + + 87 NaN NaN 175760.1 NaN 19885 4602 24487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24490 97.035 NaN 107630 35 0 31676 0.264 + 34735 YPVSCGAF 8 37 422.1885921230957 842.3626313129914 2 422.18853759765625 MULTI HCD FTMS 0 0 0 24487 8332.86328125 0.09783243678605619 -4 0.07574462890625 3 Unmodified _YPVSCGAF_ ENST00000467699.5_1_17:7604102-7605361:+|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.7337 0 0 677.2843059729508 0 677.2843059729508 0 3.36696871556164 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.7337 + + 6 + NaN NaN 101765.1 NaN 19886 4602 24487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24491 97.038 NaN 207290 35 0 33651 0.261 + 28656 TRTPRRTRRV 10 67 433.6008911912587 1297.7808441739762 3 433.60113525390625 MULTI HCD FTMS 0 0 0 24487 52144.4453125 0.5950093127200978 2 -0.0390167236328125 4 Unmodified _TRTPRRTRRV_ ENST00000447795.3_1_1:151252674-151254135:-|nuORF;ENST00000494138.4_1_1:151252674-151254299:-|nuORF 0.6268255596534771 0.47198581731947004 2 D 1 10 6.9061 0 0 0.53215 0 0 105.0773794325806 1074.629689890372 1179.7070693229525 0 0 0 0 0 0.3807196863200844 0 0 0 D 0.53215 - 15 + NaN NaN 112471.5 NaN 19887 4602 24487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24492 97.042 NaN 199640 35 0 42961 0.261 + 34513 YPFPVPPLL 9 38 521.8024391193347 NaN 0 521.8015747070312 PEAK HCD FTMS 0 0 0 24487 21552.697265625 0.17252259010150442 14 -0.3001251220703125 5 Unmodified _YPFPVPPLL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 5.230669730166228 0.26989974671959066 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 131453.9 NaN 19888 4602 24487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24494 97.047 NaN 1051700 35 0 239700 0.327 + 306 AFPEIFYTF 9 73 567.7787354088067 1133.5429178844133 2 567.7791137695312 MULTI HCD FTMS 0 0 0 24493 325612.53125 0.3290578699792673 -1 0.01950836181640625 1 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 112.59319219568356 0.00251905749371435 2 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 8 7 62.547 0 0 5.5178 0 0 165.07847792793126 0 165.07847792793126 0 49.967072242602484 0 0 0 1.8371804965004639 0 1.055462187404089 0 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 5.5178 - 660 NaN NaN 248150.4 NaN 19889 4603 24493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24495 97.051 NaN 1032900 35 0 173640 0.261 -1 0 76 572.3069094774975 1142.5992660217948 2 572.3072509765625 MULTI HCD FTMS 0 0 0 24493 111959.890625 0.08667768832175524 8 -0.17949676513671875 2 NaN NaN 2 [YE]{I|L}Q{M(Oxidation (M))|F}VW 7 -1 61.71 0 0 5.4008 0 0 0 174.08917779535753 174.08917779535753 20.061464576146854 0 0 0 0 2.274227503252014 1.5228787452803376 1.774227503252014 0 [YE]{I|L}Q{M(Oxidation (M))|F}VW 5.4008 - 643 NaN NaN 248158.5 NaN 19890 4603 24493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24496 97.055 NaN 451120 35 0 113300 0.261 + -1 MMCTSLHAF 9 42 565.2274021493782 1128.4402513655564 2 565.227783203125 MULTI HCD FTMS 0 0 0 24493 157256.390625 0.6511546040498436 5 -0.11769866943359375 3 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TSLHAF_ REV__ENST00000282020.8_1_4:94006286-94006370:+|nuORF 7.910154910731844 0.2910521888787154 2 A{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5443 0 0 892.3247556153595 0 892.3247556153595 0 14.899093853315078 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.5443 + + 27 + NaN NaN 160270.5 NaN 19891 4603 24493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24497 97.058 NaN 490230 35 0 80548 0.261 + 35825 YYPSFLPYF 9 68 598.786878677481 1195.559204421762 2 598.7868041992188 MULTI HCD FTMS 0 0 0 24493 65932.6328125 0.11356488123035478 6 -0.127288818359375 4 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 67.34385681178166 0.00994769994983633 2 YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F} 9 0 + 70.397 0 0 5.8882 5.8882 93.424 0 0 0 17.67224732093954 61.17676984150563 17.67224732093954 70.39721969291215 0 1.8494850021680094 1.6989700043360187 0.75 0 + + YY[PS]{M(Oxidation (M))|F}{I|L}PY{M(Oxidation (M))|F} 5.8882 + + 179 NaN NaN 168296.6 NaN 19892 4603 24493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24498 97.061 NaN 258930 35 0 34680 0.263 -1 0 64 469.83035827666174 937.6461636201235 2 469.8304748535156 MULTI HCD FTMS 0 0 0 24493 78664.0625 0.4734363599312504 4 -0.088165283203125 5 NaN NaN 2 E{I|L}{I|L}{I|L} 4 -1 18.663 0 0 1.9904 0 0 451.3558521955094 0 451.3558521955094 0 6.484125552406859 0 0 0 0.3182503180159344 0 0.75 0 E{I|L}{I|L}{I|L} 1.9904 - 53 NaN NaN 128573 NaN 19893 4603 24493 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24500 97.066 NaN 363250 35 0 31780 0.327 + 31534 VYGIFNSVLF 10 75 579.8131579931927 1157.6117630531853 2 579.81298828125 MULTI HCD FTMS 0 0 0 24499 199870.375 0.4174074144653942 7 -0.1599884033203125 1 Unmodified _VYGIFNSVLF_ ADC-ISOC1|1|fusion;ENSG00000142920|ENST00000294517|AZIN2;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;nc|ENSG00000142920|Q96A70-5|AZIN2 65.23502041540118 0.023231415588018726 2 T[DN]W{I|L}{M(Oxidation (M))|F} 6 7 41.749 0 0 3.6064 0 0 363.21296889472814 0 363.21296889472814 0 33.96198664241632 0 0 0 0.805462187404089 0 0.6747425010840047 0.6747425010840047 T[DN]W{I|L}{M(Oxidation (M))|F} 3.6064 - 294 NaN NaN 145671.7 NaN 19894 4604 24499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24501 97.071 NaN 65051 35 0 7891.9 0.264 + 30473 VLTETSAE 8 33 425.2146196853572 NaN 0 425.2147216796875 PEAK HCD FTMS 0 0 0 24499 52082.4375 0.7681362094844869 -41 0.7752151489257812 2 Unmodified _VLTETSAE_ REV__DLC1|p.L98I|1|0.23|ENSG00000164741|chr8:13499780-13499780|G/T|missense_variant;REV__ENSG00000164741|ENST00000276297|DLC1;REV__nc|ENSG00000164741|Q96QB1-3|DLC1;REV__nc|ENSG00000164741|Q96QB1-5|DLC1 2.302733041254933 0.38822285293237185 2 N 1 -1 5.4846 0 0 0.64645 0 0 442.2399560681769 289.10602747135005 731.345983539527 0 0 0 0 0 0 0 0 0 N 0.64645 - 2 + NaN NaN 96051.2 NaN 19895 4604 24499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24502 97.074 NaN 85197 35 0 13901 0.261 + 33823 YLITDQAETVS 11 38 620.308187069346 1238.601821205492 2 620.307861328125 MULTI HCD FTMS 0 0 0 24499 44590.9140625 0.2744560299054923 16 -0.34272003173828125 3 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 10.150570793230772 0.3686401556411756 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 5 -1 50.273 0 0 4.0589 0 0 0 598.2288302057249 598.2288302057249 44.78855930516417 0 0 0 0 0.805462187404089 2 0 0 [Y{I|L}]{I|L}T{M(Oxidation (M))|F} 4.0589 - 14 + NaN NaN 103450.1 NaN 19896 4604 24499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24504 97.079 NaN 3085500 35 0 916390 0.327 + 4485 EYIQFVPLL 9 80 561.3156922565188 1120.6168315798375 2 561.3162231445312 MULTI HCD FTMS 0 0 0 24503 1537875.125 0.1275202320061639 10 -0.23522186279296875 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 114.6490535036381 0.0021834323520089267 2 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 111.49 0 0 9.9494 9.9494 94.118 0 0 0 24.049471895720984 16.478174818886373 16.478174818886373 9.208187539523749 0 2.6307196863200843 1.154901959985743 2.504432191740108 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[Q{I|L}]YE{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V]QP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V][AG]P{I|L}{I|L};[YE]{I|L}Q{M(Oxidation (M))|F}V{I|L}P{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}V{I|L}P{I|L};[Q{I|L}]Y[{M(Oxidation (M))|F}V]EP{I|L}{I|L};[YE]{I|L}Q[{I|L}P][{M(Oxidation (M))|F}V]{I|L};[Q{I|L}]{[{M(Oxidation (M))|F}D]|MM}[Y{I|L}]P{I|L}{I|L} 9.9494;9.1277;7.8033;6.4686;5.6469;5.1979;4.3762;4.1245;3.8024;3.0039 +;-;-;-;-;-;-;-;-;- + 835 NaN NaN 568394.8 NaN 19897 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24505 97.084 NaN 580830 35 0 119520 0.261 + 6916 FPVFATVIL 9 51 503.80217059817585 1005.5897882631517 2 503.80224609375 MULTI HCD FTMS 0 0 0 24503 214814.4375 0.13915560476634214 -8 0.14386749267578125 2 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 42.09456458481378 0.05572955244001856 2 TV{I|L}{I|L} 4 5 48.488 0 0 4.8218 0 0 561.29251199192 0 561.29251199192 0 30.52887198244136 0 0 0 0.805462187404089 0 0.8494850021680094 0 + TV{I|L}{I|L} 4.8218 + + 63 NaN NaN 170461.5 NaN 19898 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24506 97.087 NaN 316430 35 0 89944 0.261 -1 0 47 586.7853388726219 1171.5561248120437 2 587.7716064453125 MULTI HCD FTMS 0 0 0 24503 18673.85546875 0.04750210159602058 15 -0.3297576904296875 3 NaN NaN 2 [Y{I|L}]{I|L} 3 -1 35.942 0 0 3.0679 0 0 0 779.3019982634853 779.3019982634853 25.48455006504028 0 0 0 0 0.8494850021680094 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.0679 - 28 NaN NaN 146543.1 NaN 19899 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24507 97.09 NaN 224880 35 0 27631 0.261 + 15855 LPLAFEFDPEL 11 44 645.8343679576992 1289.6541829821983 2 645.8344116210938 MULTI HCD FTMS 0 0 0 24503 80150.828125 0.7745331083965219 1 -0.0394439697265625 4 Unmodified _LPLAFEFDPEL_ ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10 41.95555342248728 0.1243556816384599 2 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}D[EP]{I|L} 7 4 53.276 0 0 4.131 0 0 394.25590712715 0 394.25590712715 0 30.599716763412417 0 0 0 2.305462187404089 0 0 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F}D[EP]{I|L} 4.131 + + 107 NaN NaN 132016.7 NaN 19900 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24508 97.094 NaN 299740 35 0 57317 0.262 + 10697 IPWDDLIAL 9 40 528.2932843962553 1054.5720158593106 2 528.2921142578125 MULTI HCD FTMS 0 0 0 24503 117273.5390625 0.09335059400552767 -8 0.14386749267578125 5 Unmodified _IPWDDLIAL_ ENSG00000160294|ENST00000291688|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP 11.640296217721598 0.25978676193971967 2 {I|L}A{I|L} 3 6 36.198 0 0 3.4325 0 0 739.3514234778459 0 739.3514234778459 0 32.21848749616356 0 0 0 1 0 0 0 + {I|L}A{I|L} 3.4325 + + 30 NaN NaN 132139.7 NaN 19901 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24509 97.097 NaN 87189 35 0 13161 0.261 + 34752 YPYFNPWNC 9 29 602.2503009179278 1202.4860489026555 2 602.2509155273438 MULTI HCD FTMS 0 0 0 24503 17666.578125 0.027468974318259076 16 -0.34273529052734375 6 Unmodified _YPYFNPWNC_ ENSG00000132274|ENST00000379965|TRIM22;ENSG00000258659|ENST00000429814|TRIM34;ENST00000495668.1_1_11:5664055-5664936:+|nuORF;nc|ENSG00000132274|Q8IYM9-2|TRIM22 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115001.2 NaN 19902 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24510 97.1 NaN 59014 35 0 8268.1 0.261 + 33824 YLITDQAETVS 11 36 620.308187069346 1238.601821205492 2 620.30712890625 MULTI HCD FTMS 0 0 0 24503 21880.12109375 0.13467163200164645 17 -0.36560821533203125 7 Unmodified _YLITDQAETVS_ REV__ENST00000444901.1_1_21:14899938-14900730:+|nuORF 7.101721422024254 0.3877749288398915 2 [Y{I|L}]{I|L}T 4 -1 36.682 0 0 2.9616 0 0 0 745.3054293268186 745.3054293268186 36.68243764792422 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{I|L}T 2.9616 + + 4 + NaN NaN 99218.2 NaN 19903 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24511 97.104 NaN 97661 35 0 11127 0.263 + 35976 YYVSKIVI 8 40 492.79172230348837 983.5688916737768 2 492.79205322265625 MULTI HCD FTMS 0 0 0 24503 8246.654296875 0.03257990190952471 10 -0.23522186279296875 8 Unmodified _YYVSKIVI_ ENSG00000189099|ENST00000455694|PRSS48 7.910154910731844 0.5302565402355366 2 V{I|L} 2 6 20.969 0 0 2.1319 0 0 753.4035638713851 0 753.4035638713851 0 20.880456295278403 0 0 0 0 0 0 0 + V{I|L} 2.1319 + + 10 NaN NaN 103245.7 NaN 19904 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24512 97.107 NaN 121390 35 0 16170 0.261 + 2963 DYVSIINYL 9 40 550.2869937974934 1098.5594346617868 2 550.2872924804688 MULTI HCD FTMS 0 0 0 24503 21121.396484375 0.4223640471253723 -3 0.05197906494140625 9 Unmodified _DYVSIINYL_ ENSG00000185900|ENST00000331373|POMK 38.175570920033316 0.07371992880350783 2 {I|L}NY{I|L} 4 5 44.24 0 0 4.0271 0 0 577.275682517775 0 577.275682517775 0 44.24024714504206 0 0 0 1.3807196863200843 0 0 0 + {I|L}NY{I|L} 4.0271 + + 49 NaN NaN 112050.1 NaN 19905 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24513 97.11 NaN 137740 35 0 21518 0.261 + 9206 HPLPGAWAEL 10 44 545.7854614257812 NaN 0 545.7854614257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _HPLPGAWAEL_ ENST00000482899.1_1_7:150737010-150738273:+|nuORF 6.723162845929126 0.3344301934401713 2 AEDAE{I|L} 6 7 24.87 0 0 2.2889 0 0 127.10515390449366 328.15070520572505 455.2558591102187 0 0 0 0 0 0 0 0 0 AEDAE{I|L} 2.2889 - 173 + NaN NaN 119924.7 NaN 19906 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24514 97.114 NaN 41319 35 0 4230 0.261 -1 NCCLLQKMAI 10 33 605.2935003206161 NaN 0 605.2940063476562 PEAK HCD FTMS 0 0 0 24503 19881.162109375 0.647529149977465 -12 0.2348785400390625 11 Carbamidomethyl (C),Oxidation (M) _NC(Carbamidomethyl (C))CLLQKM(Oxidation (M))AI_ ENST00000477239.1_1_20:23350773-23351022:+|nuORF 1.844237919475145 0.33860587697544825 2 W 1 -1 6.9897 0 0 0.57834 0 0 696.3522461472884 323.11054407291255 1019.462790220201 0 0 0 0 0 0 0 0 0 W 0.57834 - 2 + NaN NaN 99442.6 NaN 19907 4605 24503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24516 97.119 NaN 172480 35 0 18856 0.327 -1 0 48 586.7853388726219 1171.5561248120437 2 586.7860107421875 MULTI HCD FTMS 0 0 0 24515 59766.734375 0.03227323231355075 18 -0.355133056640625 1 NaN NaN 2 [Y{I|L}]{I|L} 3 -1 36.254 0 0 3.0946 0 0 0 779.3016160385067 779.3016160385067 18.29567163872703 0 0 0 0 0.8807196863200843 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.0946 - 11 + NaN NaN 137138.5 NaN 19908 4606 24515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24517 97.123 NaN 187200 35 0 37462 0.261 + 76 ADFLAEIEAL 10 38 546.2844620257048 1090.5543711182095 2 546.2847290039062 MULTI HCD FTMS 0 0 0 24515 92803.0703125 0.5659837864427202 -3 0.0719146728515625 2 Unmodified _ADFLAEIEAL_ ENSG00000101782|ENST00000339486|RIOK3;nc|ENSG00000101782|O14730-2|RIOK3 43.77239144664712 0.11267038882370725 2 E{I|L}EADEA{I|L} 8 6 66.351 0 0 6.0841 0 0 202.13092238593907 0 202.13092238593907 0 55.89307572311597 0 0 0 1.4247425010840047 0 0.4247425010840047 0 E{I|L}EADEA{I|L} 6.0841 - 146 NaN NaN 133844.8 NaN 19909 4606 24515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24518 97.127 NaN 49936 35 0 10139 0.261 + -1 YNIKHFFMK 9 24 622.3166113732208 NaN 0 622.3170776367188 PEAK HCD FTMS 0 0 0 24515 8079.8798828125 0.3180524609538164 14 -0.290313720703125 3 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.2427956001690155 2 {I|L} 1 -1 16.99 0 0 1.3672 0 0 852.4295046294509 274.08176599674067 1126.5112706261916 0 0 0 0 0 1 0 0 0 {I|L} 1.3672 + + 6 + NaN NaN 126157 NaN 19910 4606 24515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24519 97.13 NaN 125500 35 0 14688 0.261 + 2964 DYVSIINYL 9 55 550.2869937974934 1098.5594346617868 2 550.2767333984375 MULTI HCD FTMS 0 0 0 24515 20688.41796875 0.4137057863748108 -2 0.05240631103515625 4 Unmodified _DYVSIINYL_ ENSG00000185900|ENST00000331373|POMK 55.50274090549119 0.023872834264864425 2 {[YD]|[{M(Oxidation (M))|F}M]}VS{I|L}{I|L}NY{I|L} 9 0 + 69.403 0 0 6.3176 6.3176 90.723 0 0 0 48.43372183701504 8.384767769392738 8.384767769392738 12.703037561203843 0 2.305462187404089 1.3010299956639813 0 0.3494850021680094 + + {[YD]|[{M(Oxidation (M))|F}M]}VS{I|L}{I|L}NY{I|L};{[YD]|[{M(Oxidation (M))|F}M]}VS{I|L}{I|L}GGY{I|L} 6.3176;5.1613 +;- + 74 + NaN NaN 126342.1 NaN 19911 4606 24515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24521 97.135 NaN 706610 35 0 192940 0.327 + 11300 IYLTFPVAMF 10 57 609.3176593529477 1216.6207657726952 2 609.318115234375 MULTI HCD FTMS 0 0 0 24520 193887.84375 0.12949068534437022 24 -0.48195648193359375 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 147.8311659463005 2.5684209414330044E-07 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 124.02 0 0 10.194 10.194 92.133 0 0 0 22.754537344402905 110.83404095816412 22.754537344402905 6.00833760139686 0 3.1989700043360187 1.6989700043360187 1.9916440611282626 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{I|L}{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]T{M(Oxidation (M))|F}{I|L}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10.194;9.7001;8.7146;5.2327;4.6536 +;-;-;-;- + 318 NaN NaN 204878.4 NaN 19912 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24522 97.139 NaN 242790 35 0 15801 0.263 + 23795 RRPHSVLRRHQ 11 61 481.28353142384896 1440.828764871747 3 481.2835693359375 MULTI HCD FTMS 0 0 0 24520 141936.671875 0.3339588419427989 16 -0.31949615478515625 2 Unmodified _RRPHSVLRRHQ_ REV__ENSG00000141622|ENST00000269439|RNF165 0.4545168274142398 0.41692731010159206 2 P 1 -1 5.4846 0 0 0.38065 0 0 564.388043291472 776.3537691705686 1340.7418124620406 0 0 0 0 0 0 0 0 0 P 0.38065 + + 7 + NaN NaN 123048.2 NaN 19913 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24523 97.143 NaN 127550 35 0 7937.2 0.261 + 5583 FLNRRRRRER 10 58 486.95896564295595 1457.8550675290678 3 486.95916748046875 MULTI HCD FTMS 0 0 0 24520 69650.9609375 0.37961145205593777 16 -0.31949615478515625 3 Unmodified _FLNRRRRRER_ ENSG00000150637|ENST00000582621|CD226 0.15932191953741626 0.4744603884079788 2 W 1 10 5.4846 0 0 0.37621 0 0 803.4803859878554 465.2713717096313 1268.7517576974867 0 0 0 0 0 0 0 0 0 W 0.37621 - 11 + NaN NaN 100709.1 NaN 19914 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24524 97.146 NaN 257160 35 0 52224 0.261 + 253 AFGHSCRIHE 10 51 578.7699982353242 1155.5254435374484 2 578.7704467773438 MULTI HCD FTMS 0 0 0 24520 57450.5234375 0.3786799896926817 3 -0.0651092529296875 4 Unmodified _AFGHSCRIHE_ REV__ENSG00000198795|ENST00000361524|ZNF521 6.723162845929126 0.4397169348982109 2 {M(Oxidation (M))|F} 1 -1 11.237 0 0 0.97247 0 0 451.1758474454546 554.2609957330686 1005.4368431785233 0 0 0 0 0 0.7742275032520141 0 0 0 {M(Oxidation (M))|F} 0.97247 + + 17 + NaN NaN 124218.1 NaN 19915 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24525 97.149 NaN 301840 35 0 40970 0.261 -1 0 55 514.793133251452 1027.571713569704 2 514.79345703125 MULTI HCD FTMS 0 0 0 24520 29866.216796875 0.10343069220352359 -6 0.13047027587890625 5 NaN NaN 2 VTA{M(Oxidation (M))|F}VPE 7 -1 49.602 0 0 4.8271 0 0 266.1605396955094 0 266.1605396955094 0 19.156235460461133 0 0 0 1.2302046884880937 0 0 0 VTA{M(Oxidation (M))|F}VPE 4.8271 - 166 NaN NaN 139750 NaN 19916 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24526 97.153 NaN 47860 35 0 3929.3 0.261 + 12415 KPGQQKRRQR 10 31 641.3846908429772 1280.7548287527543 2 641.3851928710938 MULTI HCD FTMS 0 0 0 24520 75623.8046875 0.5392135312649637 5 -0.11093902587890625 6 Unmodified _KPGQQKRRQR_ REV__ENSG00000129347|ENST00000312962|KRI1;REV__ENST00000536689.5_1_19:10664629-10668377:-|nuORF;REV__ENST00000537363.5_1_19:10664629-10670250:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99469.4 NaN 19917 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24527 97.156 NaN 155270 35 0 18027 0.261 + 3014 EACRQDLCFC 10 48 594.2348319013194 1186.4551108694386 2 594.2347412109375 MULTI HCD FTMS 0 0 0 24520 25704.642578125 0.3648427509692712 3 -0.0651092529296875 7 Unmodified _EACRQDLCFC_ ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant 1.844237919475145 0.46554186016084764 2 W 1 10 6.9897 0 0 0.58912 0 0 131.9824346671606 865.3726939953087 997.3551286624693 0 0 0 0 0 0 0 0 0 W 0.58912 - 17 + NaN NaN 108542.4 NaN 19918 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24528 97.159 NaN 70925 35 0 13989 0.261 + -1 KRRQLCVRKLM 11 38 510.6341176183331 1528.8805234551994 3 510.9688415527344 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0 0.41892066650488113 2 Y 1 -1 1.9897 0 0 0.13014 0 0 995.5935494335182 367.19696985416255 1362.7905192876808 0 0 0 0 0 0 0 0 0 Y 0.13014 - 1 + NaN NaN 105031.9 NaN 19919 4607 24520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24530 97.164 NaN 132600 35 0 29837 0.327 + 6245 FPEVDVFVL 9 40 532.7865657404676 1063.5585785477351 2 532.786376953125 MULTI HCD FTMS 0 0 0 24529 45888.375 0.3544681714942441 13 -0.25750732421875 1 Unmodified _FPEVDVFVL_ ENSG00000132768|ENST00000255108|DPH2;nc|ENSG00000132768|Q9BQC3-3|DPH2 11.640296217721598 0.25978676193971967 2 {M(Oxidation (M))|F}V{I|L} 3 6 34.253 0 0 3.2206 0 0 686.3258901136672 0 686.3258901136672 0 27.26280941356464 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}V{I|L} 3.2206 + + 23 NaN NaN 111325.4 NaN 19920 4608 24529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24531 97.169 NaN 56423 35 0 9031.2 0.261 + -1 LYLGHCRALH 10 26 620.3230967282819 NaN 0 620.3098754882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _LYLGHC(Carbamidomethyl (C))RALH_ REV__chr12:49324037-49324155|514|13.55|0.5|4.76|+|ENST00000380327|TROAP,TROAP;REV__ENST00000549275.5_2_12:49717501-49718035:+|nuORF;REV__ENST00000550709.5_2_12:49717891-49718032:+|nuORF;REV__nc|ENSG00000135451|Q12815-2|TROAP 4.3292370932331545 0.3364790620948225 2 {I|L}T{M(Oxidation (M))|F} 3 -1 16.198 0 0 1.3077 0 0 276.17776740149253 598.2293795221311 874.4071469236237 0 0 0 0 0 0 0 0 0 {I|L}T{M(Oxidation (M))|F} 1.3077 - 7 + NaN NaN 102578.1 NaN 19921 4608 24529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24533 97.174 NaN 888250 35 0 203140 0.327 + 307 AFPEIFYTF 9 75 567.7787354088067 1133.5429178844133 2 567.7792358398438 MULTI HCD FTMS 0 0 0 24532 467846.40625 0.47279673582304726 5 -0.10761260986328125 1 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 88.90359156742426 0.00455469703666567 2 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 8 7 59.66 0 0 5.2631 0 0 165.07855422187657 0 165.07855422187657 0 35.7711470149615 0 0 0 1.8737125054200234 0 0.7302046884880937 0 TY{M(Oxidation (M))|F}{I|L}AHA{M(Oxidation (M))|F} 5.2631 - 413 NaN NaN 223945.2 NaN 19922 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24534 97.178 NaN 682570 35 0 114520 0.261 + 17146 LYLPSFFTY 9 57 575.79444686376 1149.5743407943198 2 575.794677734375 MULTI HCD FTMS 0 0 0 24532 307469.53125 0.03176604271804177 21 -0.42656707763671875 2 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 131.29775728308752 0.0005262696486345744 2 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 87.528 0 0 7.6139 7.6139 95.408 0 0 0 16.650830338269458 62.45567808259892 16.650830338269458 35.34440644703906 0 2.7614393726401687 1.6989700043360187 0.7059771852360797 0 + + [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[YT]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}{I|L}Y;[{M(Oxidation (M))|F}T]Y{M(Oxidation (M))|F}[PS]{I|L}Y{I|L};[YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}[PS]{I|L}Y{I|L} 7.6139;4.5393;2.4234;2.3391;1.0492;0.96492 +;-;-;-;-;- + 206 NaN NaN 198986.9 NaN 19923 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24535 97.182 NaN 316390 35 0 69346 0.261 + -1 MMCTSLHAF 9 48 565.2274021493782 1128.4402513655564 2 565.22802734375 MULTI HCD FTMS 0 0 0 24532 79551.0546875 0.32939860383996095 11 -0.2349395751953125 3 Carbamidomethyl (C),2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))C(Carbamidomethyl (C))TSLHAF_ REV__ENST00000282020.8_1_4:94006286-94006370:+|nuORF 7.910154910731844 0.2910521888787154 2 A{M(Oxidation (M))|F} 2 -1 28.711 0 0 2.5443 0 0 892.3251828614533 0 892.3251828614533 0 16.73897777978805 0 0 0 0.9247425010840047 0 0 0 A{M(Oxidation (M))|F} 2.5443 + + 21 + NaN NaN 140512.2 NaN 19924 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24536 97.185 NaN 223160 35 0 54020 0.261 + 15780 LPGRPWHSQ 9 57 539.2831182428213 1076.5516835524425 2 539.283447265625 MULTI HCD FTMS 0 0 0 24532 78517.2734375 0.4344245012003697 -9 0.19223785400390625 4 Unmodified _LPGRPWHSQ_ ENST00000478402.5_1_1:226110107-226110167:-|nuORF 26.88365393820708 0.12808753336095696 2 {I|L}PWC(Carbamidomethyl (C)) 4 6 43.682 0 0 4.0576 0 0 0 517.2791842096311 517.2791842096311 25.2654351111229 0 0 0 0 0.5 1.3979400086720375 0 0 {I|L}PWC(Carbamidomethyl (C)) 4.0576 - 32 + NaN NaN 134035.2 NaN 19925 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24537 97.188 NaN 113980 35 0 8944.8 0.261 + 17387 LYQILQGIVF 10 47 597.3501997907986 1192.685846648397 2 597.35009765625 MULTI HCD FTMS 0 0 0 24532 83973.84375 0.030941675750170945 21 -0.42656707763671875 5 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 32.78568957990786 0.20801173326193015 2 {I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 6 4 44.526 0 0 3.7332 0 0 517.2894154279312 0 517.2894154279312 0 36.56681865368853 0 0 0 1.8494850021680094 0 0 0 + {I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 3.7332 + + 63 NaN NaN 103185 NaN 19926 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24538 97.192 NaN 189780 35 0 24059 0.261 + 15023 LLMFLSSYA 9 47 522.7757943119384 NaN 0 522.775390625 PEAK HCD FTMS 0 0 0 24532 22517.30859375 0.7396507797991121 -9 0.19223785400390625 6 Unmodified _LLMFLSSYA_ REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 6.9897 0 0 0.66981 0 0 113.08515499963046 814.3458100113295 927.43096501096 0 0 0 0 0 0 0 0 0 {I|L} 0.66981 + + 3 + NaN NaN 133695.9 NaN 19927 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24539 97.195 NaN 72689 35 0 8138.3 0.261 + -1 YYHPMYQW 8 38 602.2503009179278 1202.4860489026555 2 602.2491455078125 MULTI HCD FTMS 0 0 0 24532 34784.12890625 0.05408429050879339 20 -0.41028594970703125 7 Oxidation (M) _YYHPM(Oxidation (M))YQW_ REV__ENST00000463918.1_1_2:180409590-180524871:-|nuORF 2.8892196856762586 0.5377058178582064 2 YYQ 3 -1 27.447 0 0 2.2825 0 0 0 745.2726449322055 745.2726449322055 20.457574905606748 0 0 0 0 0 2 0 0 YYQ 2.2825 - 12 NaN NaN 118483.4 NaN 19928 4609 24532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24541 97.2 NaN 234290 35 0 25496 0.327 -1 0 57 572.3069094774975 1142.5992660217948 2 572.3072509765625 MULTI HCD FTMS 0 0 0 24540 61258.7421875 0.04742561048130609 15 -0.300048828125 1 NaN NaN 2 V{M(Oxidation (M))|F}Q[C(Carbamidomethyl (C))N]{I|L} 6 -1 23.435 0 0 2.051 0 0 363.2127695424461 0 363.2127695424461 0 15.476146931408294 0 0 0 0.7059771852360797 0 0 0 V{M(Oxidation (M))|F}Q[C(Carbamidomethyl (C))N]{I|L} 2.051 - 79 NaN NaN 142125.2 NaN 19929 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24542 97.204 NaN 102250 35 0 13255 0.261 + 25123 SAFYYNRGM 9 44 554.7480233764153 NaN 0 554.7486572265625 PEAK HCD FTMS 0 0 0 24540 35522.48828125 0.4961589483899065 -7 0.1532745361328125 2 Unmodified _SAFYYNRGM_ REV__ENST00000230640.9_1_5:54639171-54639198:+|nuORF 3.944395688203298 0.27613285122220627 2 A 1 -1 3.9794 0 0 0.35932 0 0 87.04574180896869 946.3795462832749 1033.4252880922436 0 0 0 0 0 0 0 0 0 A 0.35932 + + 9 + NaN NaN 105829.9 NaN 19930 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24543 97.208 NaN 163970 35 0 31548 0.263 + 28288 TLRPSRRRTR 10 52 433.6008911912587 1297.7808441739762 3 433.6013488769531 MULTI HCD FTMS 0 0 0 24540 21706.267578125 0.24768566001569162 10 -0.208953857421875 3 Unmodified _TLRPSRRRTR_ TTC19-PIGL|1|fusion 0.15932191953741626 0.4744603884079788 2 H 1 10 4.6041 0 0 0.35477 0 0 745.4598735702638 412.2269686334594 1157.6868422037232 0 0 0 0 0 0 0 0 0 H 0.35477 - 2 + NaN NaN 112865.2 NaN 19931 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24544 97.211 NaN 161420 35 0 21103 0.261 + 35826 YYPSFLPYF 9 46 598.786878677481 1195.559204421762 2 599.289794921875 MULTI HCD FTMS 0 0 0 24540 19126.845703125 0.06672327377547627 13 -0.25438690185546875 4 Unmodified _YYPSFLPYF_ ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44 21.74664581756881 0.17247014374749275 2 {I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 4 5 26.198 0 0 2.1913 0 0 657.2797148387768 0 657.2797148387768 0 20.713337517843655 0 0 0 1 0 0 0 + {I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F} 2.1913 + + 38 NaN NaN 120123 NaN 19932 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24545 97.215 NaN 189180 35 0 30734 0.261 + 35524 YYGGQWFLF 9 33 590.7765826576338 1179.5386123820674 2 590.7760009765625 MULTI HCD FTMS 0 0 0 24540 49506.03125 0.3834233183254139 -5 0.1208038330078125 5 Unmodified _YYGGQWFLF_ ENST00000455359.5_2_22:35653519-35659991:+|nuORF 23.1484247019978 0.1603590852062899 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.0688 0 0 754.3064868450834 0 754.3064868450834 0 21.972805581256196 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.0688 + + 36 NaN NaN 114611.3 NaN 19933 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24546 97.218 NaN 198030 35 0 41694 0.261 + 14704 LHCLEQNKE 9 53 557.2738808789306 1112.5332088246612 2 557.2867431640625 MULTI HCD FTMS 0 0 0 24540 6986.22900390625 0.26770796964536236 1 -0.02622222900390625 6 Unmodified _LHCLEQNKE_ REV__ENSG00000027644|ENST00000368195|INSRR 13.042465956692817 0.2476723265019929 2 W{M(Oxidation (M))|F}{I|L}AE{I|L} 6 -1 39.25 0 0 3.528 0 0 0 350.1328524225219 350.1328524225219 21.291367667129094 0 0 0 0 1.4124379954164592 0 0 0 W{M(Oxidation (M))|F}{I|L}AE{I|L} 3.528 - 82 + NaN NaN 141054.2 NaN 19934 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24547 97.221 NaN 45857 35 0 4693.1 0.261 + 23386 RKWFIYCF 8 32 581.7949562461878 NaN 0 581.7938232421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RKWFIYCF_ REV__ENSG00000249715|ENST00000624922|FER1L5;REV__nc|ENSG00000249715|A0AVI2-2|FER1L5;REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 5.230669730166228 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106618.4 NaN 19935 4610 24540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24549 97.226 NaN 1921300 35 0 559110 0.327 + 6917 FPVFATVIL 9 64 503.80217059817585 1005.5897882631517 2 503.80242919921875 MULTI HCD FTMS 0 0 0 24548 799724.1875 0.5180569064769406 -2 0.05220794677734375 1 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 77.98433622928108 0.006504613272346738 2 [{I|L}V][WY]TV{I|L}{I|L} 8 4 + 68.849 0 0 6.8467 6.8467 95.041 0 0 0 11.42667503568731 46.56926918935653 11.42667503568731 68.84942536088872 0 1.3494850021680094 1.3979400086720375 1.1989700043360187 0 [{I|L}V][WY]TV{I|L}{I|L} 6.8467 - 191 NaN NaN 384331 NaN 19936 4611 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24550 97.231 NaN 1073800 35 0 309500 0.261 + 4486 EYIQFVPLL 9 63 561.3156922565188 1120.6168315798375 2 561.31591796875 MULTI HCD FTMS 0 0 0 24548 415762.25 0.03447490483299463 16 -0.30937957763671875 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 85.64151623876279 0.004640175941193596 2 [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L} 9 0 + 87.189 0 0 7.7804 7.7804 91.697 0 0 0 22.363263264386006 57.49622901658924 22.363263264386006 9.208187539523749 0 2.305462187404089 0 1.9731975075880328 0 + + [YE]{I|L}Q{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[AG]{M(Oxidation (M))|F}VP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V]QP{I|L}{I|L};[YE]{I|L}[{M(Oxidation (M))|F}V][AG]P{I|L}{I|L};[{I|L}T][WD]{M(Oxidation (M))|F}[{I|L}T]{I|L}{I|L} 7.7804;6.9587;4.2553;3.4336;1.5908 +;-;-;-;- + 307 NaN NaN 253800.1 NaN 19937 4611 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24551 97.234 NaN 287500 35 0 38317 0.261 + 15856 LPLAFEFDPEL 11 58 645.8343679576992 1289.6541829821983 2 645.8342895507812 MULTI HCD FTMS 0 0 0 24548 83702.9140625 0.8088584950060373 7 -0.1402740478515625 3 Unmodified _LPLAFEFDPEL_ ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;nc|ENSG00000100429|Q969S8-4|HDAC10 61.60191391372663 0.033776152178474975 2 {M(Oxidation (M))|F}E{M(Oxidation (M))|F}DPE{I|L} 7 4 74.016 0 0 5.7392 0 0 394.25682265449376 0 394.25682265449376 0 65.94412321045148 0 0 0 2.274227503252014 0 0.3807196863200844 0 + {M(Oxidation (M))|F}E{M(Oxidation (M))|F}DPE{I|L} 5.7392 + + 287 NaN NaN 131803.7 NaN 19938 4611 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24552 97.237 NaN 114050 35 0 12983 0.264 -1 0 53 469.83035827666174 937.6461636201235 2 469.8296813964844 MULTI HCD FTMS 0 0 0 24548 38282.4375 0.23040124401527823 12 -0.2281646728515625 4 NaN NaN 2 Q{I|L}{I|L}{I|L} 4 -1 18.672 0 0 1.9914 0 0 452.33421523261876 0 452.33421523261876 0 4.068043921522531 0 0 0 0 0 0 0 Q{I|L}{I|L}{I|L} 1.9914 - 23 NaN NaN 104797.4 NaN 19939 4611 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24553 97.241 NaN 138210 35 0 31321 0.261 -1 0 40 586.7853388726219 1171.5561248120437 2 587.7730712890625 MULTI HCD FTMS 0 0 0 24548 8282.79296875 0.02106956829342454 19 -0.374359130859375 5 NaN NaN 2 [Y{I|L}]{I|L} 3 -1 27.932 0 0 2.3842 0 0 0 779.3020113580686 779.3020113580686 17.47425010840047 0 0 0 0 0.5 1.6989700043360187 0 0 [Y{I|L}]{I|L} 2.3842 - 17 + NaN NaN 116103.6 NaN 19940 4611 24548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24555 97.246 NaN 912370 35 0 233760 0.327 + 10698 IPWDDLIAL 9 53 528.2932843962553 1054.5720158593106 2 528.2920532226562 MULTI HCD FTMS 0 0 0 24554 397879.125 0.316714690782504 -1 0.0196075439453125 1 Unmodified _IPWDDLIAL_ ENSG00000160294|ENST00000291688|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP 16.942295170755138 0.21397866736869717 2 {I|L}A{I|L} 3 6 36.198 0 0 3.4325 0 0 739.3548551610364 0 739.3548551610364 0 27.781512503836435 0 0 0 1 0 0 0 + {I|L}A{I|L} 3.4325 + + 75 NaN NaN 223009.9 NaN 19941 4612 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24556 97.25 NaN 381820 35 0 62409 0.261 + 17334 LYPSTLFLL 9 59 533.8125712465235 1065.6105895598469 2 533.8125 MULTI HCD FTMS 0 0 0 24554 79412.21875 0.09713865778302744 -8 0.179595947265625 2 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 97.07464715276575 0.004340583992084827 2 [Y{I|L}][PS]T{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 79.42 0 0 7.453 7.453 92.987 0 0 0 13.455612550363796 16.478174818886373 13.455612550363796 13.455612550363796 0 2.274227503252014 1.3979400086720375 1.0356668758921828 0 + + [Y{I|L}][PS]T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}][PS]VVY{I|L}{I|L};[Y{I|L}][PS]VV{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}VVY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}VV{I|L}Y{I|L} 7.453;6.1903;3.8286;2.6542;2.5658;1.3915 +;-;-;-;-;- + 205 NaN NaN 148678.3 NaN 19942 4612 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24557 97.254 NaN 195450 35 0 36656 0.261 + 15699 LPEPYWIVL 9 44 565.3181516482758 1128.6217503633516 2 565.3177490234375 MULTI HCD FTMS 0 0 0 24554 52865.4375 0.011643198762062802 39 -0.7556610107421875 3 Unmodified _LPEPYWIVL_ ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23 15.847184025352803 0.2234401846867398 2 W{I|L}V{I|L} 4 5 34.285 0 0 3.0377 0 0 599.2942982404312 0 599.2942982404312 0 13.315468932362577 0 0 0 0.9247425010840047 0 0 0 + W{I|L}V{I|L} 3.0377 + + 18 NaN NaN 146238.5 NaN 19943 4612 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24558 97.257 NaN 114500 35 0 7868.4 0.261 + 2965 DYVSIINYL 9 37 550.2869937974934 1098.5594346617868 2 550.2870483398438 MULTI HCD FTMS 0 0 0 24554 13992.47265625 0.2798071322962402 4 -0.081512451171875 4 Unmodified _DYVSIINYL_ ENSG00000185900|ENST00000331373|POMK 24.990960013464015 0.14443998892849796 2 {I|L}NY{I|L} 4 5 38.8 0 0 3.5319 0 0 577.2752552716812 0 577.2752552716812 0 31.81031895404267 0 0 0 0.9247425010840047 0 0 0 + {I|L}NY{I|L} 3.5319 + + 17 NaN NaN 131372.4 NaN 19944 4612 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24559 97.26 NaN 50849 35 0 8816.3 0.261 + 28382 TPEMQYKGQM 10 27 606.7716066333662 NaN 0 606.7884521484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _TPEMQYKGQM_ REV__ENST00000469087.1_1_21:36206419-36206857:-|nuORF 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114854.5 NaN 19945 4612 24554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24561 97.265 NaN 390570 35 0 109260 0.327 + 11301 IYLTFPVAMF 10 42 609.3176593529477 1216.6207657726952 2 609.3175659179688 MULTI HCD FTMS 0 0 0 24560 173114.09375 0.11561664831014996 30 -0.5826873779296875 1 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 112.59319219568356 4.798275876566979E-05 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 98.977 0 0 8.1354 8.1354 97.051 0 0 0 5.764837301042718 91.98760662364698 5.764837301042718 59.03843485167222 0 2.774227503252014 0 1.610924374808178 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVA{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VA{M(Oxidation (M))|F}{M(Oxidation (M))|F} 8.1354;3.2828;3.0527 +;-;- + 193 NaN NaN 141202.7 NaN 19946 4613 24560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24562 97.27 NaN 160880 35 0 31321 0.261 -1 0 48 545.3167159605342 1088.6188789878684 2 545.3170166015625 MULTI HCD FTMS 0 0 0 24560 41651.33984375 0.5830544851657368 -1 0.01953887939453125 2 NaN NaN 2 AH 2 -1 8.5835 0 0 0.78848 0 0 132.15224538641047 745.3433931940061 877.4956385804167 0 0 0 0 0 0 0 0 0 AH 0.78848 - 21 + NaN NaN 119443.3 NaN 19947 4613 24560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24563 97.273 NaN 53785 35 0 5891.2 0.261 + 8819 HKGSVGRLPR 10 41 553.8298623715486 1105.6451718098972 2 553.8309936523438 MULTI HCD FTMS 0 0 0 24560 33349.953125 0.7253556839984745 -2 0.03914642333984375 3 Unmodified _HKGSVGRLPR_ REV__ENSG00000165072|ENST00000377182|MAMDC2;REV__nc|ENSG00000165072|Q7Z304-2|MAMDC2 1.3295316138638542 0.46826628246186464 2 S{[SA]|[TG]} 3 -1 10.458 0 0 0.94583 0 0 842.5002308576187 0 842.5002308576187 0 4.9730248405664685 0 0 0 0 0 0 0 S{[SA]|[TG]} 0.94583 - 4 NaN NaN 115440 NaN 19948 4613 24560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24564 97.277 NaN 34026 35 0 4934.1 0.261 + 2798 DYIIPYQFW 9 25 622.8025291904733 NaN 0 622.8018798828125 PEAK HCD FTMS 0 0 0 24560 14428.62109375 0.9999212239897044 4 -0.0881805419921875 4 Unmodified _DYIIPYQFW_ REV__ENSG00000215021|ENST00000535923|PHB2;REV__ENST00000543465.5_1_12:7077022-7079730:-|nuORF;REV__nc|ENSG00000215021|Q99623-2|PHB2 1.844237919475145 0.28630992268396543 2 {I|L} 1 -1 6.9897 0 0 0.56206 0 0 278.0750768362214 849.4066857793345 1127.481762615556 0 0 0 0 0 0 0 0 0 {I|L} 0.56206 + + 1 + NaN NaN 114014.7 NaN 19949 4613 24560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24566 97.282 NaN 304200 35 0 41651 0.327 -1 0 41 514.793133251452 1027.571713569704 2 514.7935180664062 MULTI HCD FTMS 0 0 0 24565 144423.203125 0.5001568150081811 1 -0.0327911376953125 1 NaN NaN 2 VTA{M(Oxidation (M))|F}VPE 7 -1 53.958 0 0 5.251 0 0 266.16035659004064 0 266.16035659004064 0 28.74175720442146 0 0 0 1.1747425010840047 0 0 0 VTA{M(Oxidation (M))|F}VPE 5.251 - 211 NaN NaN 139085.5 NaN 19950 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24567 97.286 NaN 329020 35 0 17321 0.261 + 22688 QWSRLRRRAGR 11 71 481.28353142384896 1440.828764871747 3 481.2835388183594 MULTI HCD FTMS 0 0 0 24565 204517.265625 0.4812029779420442 23 -0.4425048828125 2 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 1.3296431237094175 0.4130893034510334 2 Q 1 -1 10.485 0 0 0.72767 0 0 722.4277771781907 587.3281344049436 1309.7559115831343 0 0 0 0 0 0.5 0 0 0 Q 0.72767 + + 26 + NaN NaN 144705 NaN 19951 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24568 97.29 NaN 233780 35 0 40095 0.261 + 77 ADFLAEIEAL 10 46 546.2844620257048 1090.5543711182095 2 546.2848510742188 MULTI HCD FTMS 0 0 0 24565 81863.4375 0.4992655757125974 5 -0.10778045654296875 3 Unmodified _ADFLAEIEAL_ ENSG00000101782|ENST00000339486|RIOK3;nc|ENSG00000101782|O14730-2|RIOK3 43.77239144664712 0.11267038882370725 2 E{I|L}EADEA{I|L} 8 6 69.986 0 0 6.4174 0 0 202.13157851386876 0 202.13157851386876 0 69.60704069871343 0 0 0 1.4247425010840047 0 0.4247425010840047 0 E{I|L}EADEA{I|L} 6.4174 - 126 NaN NaN 142841.6 NaN 19952 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24569 97.293 NaN 175660 35 0 7660.4 0.261 + 21284 PRSRRRYVRGR 11 68 486.95896564295595 1457.8550675290678 3 486.9588928222656 MULTI HCD FTMS 0 0 0 24565 92960.7890625 0.5066546052673598 23 -0.4425048828125 4 Unmodified _PRSRRRYVRGR_ ENSG00000166851|ENST00000300093|PLK1 0.40826533853263924 0.41713015341995335 2 A 1 11 4.6041 0 0 0.31581 0 0 105.08031187841569 1278.722699936835 1383.8030118152506 0 0 0 0 0 0 0 0 0 A 0.31581 - 5 + NaN NaN 123619.1 NaN 19953 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24570 97.296 NaN 369970 35 0 46467 0.261 + 27038 SYLYGLLAF 9 59 523.7813781888744 1045.5482034445488 2 523.2897338867188 MULTI HCD FTMS 0 0 0 24565 5918.96923828125 0.23335566007814015 4 -0.084869384765625 5 Unmodified _SYLYGLLAF_ ENSG00000115486|ENST00000233838|GGCX;GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX 28.486842064014134 0.11819662193267319 2 {I|L}A{M(Oxidation (M))|F} 3 6 32.167 0 0 3.0766 0 0 696.3485096963051 0 696.3485096963051 0 25.17728766960431 0 0 0 1.1989700043360187 0 0 0 + {I|L}A{M(Oxidation (M))|F} 3.0766 + + 75 + NaN NaN 151144.2 NaN 19954 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24571 97.299 NaN 170220 35 0 23709 0.261 + 321 AFYHRYYH 8 47 578.7699982353242 1155.5254435374484 2 578.7697143554688 MULTI HCD FTMS 0 0 0 24565 59299.890625 0.39086992819276084 10 -0.19214630126953125 6 Unmodified _AFYHRYYH_ ENSG00000158008|ENST00000374280|EXTL1 2.577480529830294 0.5381683276125971 2 A 1 7 8.9794 0 0 0.77708 0 0 451.1711477384234 630.2916353815061 1081.4627831199296 0 0 0 0 0 0.3494850021680094 0 0 0 + A 0.77708 + + 1 + NaN NaN 107604.4 NaN 19955 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24572 97.303 NaN 31287 35 0 6067.6 0.261 + 30527 VMRHRPFLLL 10 23 641.3846908429772 1280.7548287527543 2 641.3851318359375 MULTI HCD FTMS 0 0 0 24565 24035.453125 0.17137780370400987 12 -0.23136138916015625 7 Unmodified _VMRHRPFLLL_ REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF 0 0.4753037046562868 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91180.1 NaN 19956 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24573 97.306 NaN 50923 35 0 5403.2 0.261 + 33999 YLWMERQKS 9 32 620.8095514020717 NaN 0 620.8103637695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _YLWMERQKS_ ENSG00000107147|ENST00000371757|KCNT1;ENSG00000162687|ENST00000294725|KCNT2;ENST00000498426.5_1_1:196286396-196434478:-|nuORF;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant;nc|ENSG00000107147|Q5JUK3-2|KCNT1;nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;nc|ENSG00000162687|Q6UVM3-2|KCNT2;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-4|KCNT2 4.3292370932331545 0.2742679634796037 2 {I|L} 1 8 6.9897 0 0 0.56387 0 0 277.1523820482651 846.3471819540187 1123.4995640022837 0 0 0 0 0 0 0 0 0 + {I|L} 0.56387 + + 2 + NaN NaN 98444.6 NaN 19957 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24574 97.309 NaN 82420 35 0 8145.7 0.261 + 24279 RYFLPPYTF 9 39 602.3137098977769 NaN 0 602.2702026367188 PEAK HCD FTMS 0 0 0 24565 6162.84716796875 0.24908270781983444 -4 0.08162689208984375 9 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.2057823575117 0.2651744870083793 2 V 1 9 6.9897 0 0 0.58121 0 0 166.1722673523912 934.3674291364129 1100.539696488804 0 0 0 0 0 0 0 0 0 V 0.58121 - 6 + NaN NaN 109740.6 NaN 19958 4614 24565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24576 97.314 NaN 389400 35 0 109310 0.327 + 29769 VEDLWELAL 9 63 544.2871478481047 1086.5597427630094 2 544.803466796875 MULTI HCD FTMS 0 0 0 24575 20573.240234375 0.3856851003425782 1 -0.0129241943359375 1 Unmodified _VEDLWELAL_ REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF;REV__ENST00000456495.5_3_3:48341958-48342842:-|nuORF 16.942295170755138 0.21397866736869717 2 {I|L}A{I|L} 3 -1 26.555 0 0 2.4439 0 0 771.3437367169937 0 771.3437367169937 0 19.20818753952375 0 0 0 0.4247425010840047 0 0 0 {I|L}A{I|L} 2.4439 + + 76 NaN NaN 152615.4 NaN 19959 4615 24575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24577 97.319 NaN 98773 35 0 11465 0.261 + 7411 FVNLEFLSL 9 39 541.3000888354528 1080.5856247377055 2 541.8015747070312 MULTI HCD FTMS 0 0 0 24575 25578.50390625 0.5024736562059872 7 -0.1303863525390625 2 Unmodified _FVNLEFLSL_ ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B 22.65808497894818 0.16459551161911185 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}S{I|L} 5 4 45.745 0 0 4.2334 0 0 455.27049452949376 0 455.27049452949376 0 34.31872208767466 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}S{I|L} 4.2334 - 179 NaN NaN 115632.9 NaN 19960 4615 24575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24578 97.322 NaN 34720 35 0 4824.1 0.261 + 17803 MFLICVFCVAV 11 29 622.8175459253007 NaN 0 622.8861083984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MFLICVFCVAV_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 3.5964929083625545 0.33191792882328314 2 {I|L} 1 -1 6.9897 0 0 0.56204 0 0 853.4305802765795 274.0822847955688 1127.5128650721483 0 0 0 0 0 0 0 0 0 {I|L} 0.56204 + + 2 + NaN NaN 115566.5 NaN 19961 4615 24575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24580 97.327 NaN 462270 35 0 43474 0.327 + 25672 SIACPSTAVIL 11 53 537.7968508304074 1073.5791487276147 2 537.7972412109375 MULTI HCD FTMS 0 0 0 24579 224768.5625 0.3060575670909418 -4 0.081512451171875 1 Unmodified _SIACPSTAVIL_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000485650.5_1_13:28015203-28024670:-|nuORF 47.748688679222035 0.09066307675719942 2 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L} 8 7 71.01 0 0 6.6143 0 0 0 128.07159996827878 128.07159996827878 54.01995102071069 0 0 0 0 2.5114393726401687 1.154901959985743 1.274227503252014 0 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L} 6.6143 - 152 NaN NaN 167062.4 NaN 19962 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24581 97.332 NaN 320650 35 0 64808 0.261 + 308 AFPEIFYTF 9 62 567.7787354088067 1133.5429178844133 2 567.7791137695312 MULTI HCD FTMS 0 0 0 24579 117326.328125 0.11856776972646411 12 -0.23735809326171875 2 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 78.14939416004806 0.006451203201226903 2 [YE]HK{M(Oxidation (M))|F}YT 7 6 65.776 0 0 5.8027 0 0 0 162.0558260553344 162.0558260553344 41.31182901342207 0 0 0 0 1 2 0.7059771852360797 0 [YE]HK{M(Oxidation (M))|F}YT 5.8027 - 214 + NaN NaN 149009.5 NaN 19963 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24582 97.335 NaN 640800 35 0 84724 0.261 + 14535 LFEFGVFEY 9 73 575.7761417843664 1149.5377306355326 2 575.7946166992188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LFEFGVFEY_ REV__CHST4|p.L296F|1|0.25|ENSG00000140835|chr16:71537565-71537565|G/T|missense_variant 11.640296217721598 0.25978676193971967 2 T{M(Oxidation (M))|F}P{I|L}{I|L}DTY 8 -1 45.373 0 0 3.9471 0 0 181.03607310337628 0 181.03607310337628 0 15.726825097560422 0 0 0 0 0 0.7059771852360797 0 T{M(Oxidation (M))|F}P{I|L}{I|L}DTY 3.9471 - 936 + NaN NaN 210781.5 NaN 19964 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24583 97.339 NaN 137210 35 0 42736 0.261 + 13614 KYPENFFLL 9 37 585.813014219414 1169.6114755056278 2 585.8134155273438 MULTI HCD FTMS 0 0 0 24579 44933.51953125 0.5810539526888047 -4 0.081512451171875 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.363084861525 0 778.363084861525 0 10.228787452803374 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 19 NaN NaN 111958.3 NaN 19965 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24584 97.342 NaN 148620 35 0 29302 0.261 -1 TYNMVLNLL 9 48 548.7881584668881 1095.5617640005762 2 548.7889404296875 MULTI HCD FTMS 0 0 0 24579 24640.033203125 0.2175192778848618 -4 0.081512451171875 5 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 13.90604991867851 0.24021115267848145 2 [YT]{M(Oxidation (M))|F} 3 -1 39.705 0 0 3.6242 0 0 0 681.3589442238185 681.3589442238185 14.928702923165389 0 0 0 0 0.9247425010840047 2 0 0 [YT]{M(Oxidation (M))|F} 3.6242 - 43 + NaN NaN 109883.4 NaN 19966 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24585 97.345 NaN 136190 35 0 11351 0.261 + 17388 LYQILQGIVF 10 39 597.3501997907986 1192.685846648397 2 597.85205078125 MULTI HCD FTMS 0 0 0 24579 12980.2236328125 0.007178884009892088 28 -0.5369796752929688 6 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 32.78568957990786 0.20801173326193015 2 {I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 7 3 44.569 0 0 3.7369 0 0 404.2047291486344 0 404.2047291486344 0 37.579788405306616 0 0 0 1.8494850021680094 0 0 0 + {I|L}{I|L}Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 3.7369 + + 63 NaN NaN 117488.9 NaN 19967 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24586 97.349 NaN 79141 35 0 7117.8 0.262 -1 PWRFRLLCLLR 11 46 510.6341176183331 1528.8805234551994 3 510.9685363769531 MULTI HCD FTMS 0 0 0 24579 30274.09375 0.5068502763385904 -18 0.3758697509765625 7 Carbamidomethyl (C) _PWRFRLLC(Carbamidomethyl (C))LLR_ ENSG00000167733|ENST00000339423|HSD11B1L;ENST00000578046.1_2_19:5687695-5687953:+|nuORF;ENST00000581423.1_1_19:5687386-5687953:+|nuORF;nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L 0.09484139111097674 0.41850472438158626 2 W 1 -1 0.71334 0 0 0.046658 0 0 1036.6457344921118 303.1216219537719 1339.7673564458837 0 0 0 0 0 0 0 0 0 W 0.046658 + + 3 + NaN NaN 107832.9 NaN 19968 4616 24579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24588 97.354 NaN 176400 35 0 29729 0.327 + 35525 YYGGQWFLF 9 43 590.7765826576338 1179.5386123820674 2 590.7769165039062 MULTI HCD FTMS 0 0 0 24587 107796.9296875 0.8348852744295185 2 -0.035858154296875 1 Unmodified _YYGGQWFLF_ ENST00000455359.5_2_22:35653519-35659991:+|nuORF 36.04419817259434 0.08350412372117409 2 W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 5 46.186 0 0 3.9156 0 0 568.2268183672998 0 568.2268183672998 0 35.19470111390836 0 0 0 1.4247425010840047 0 0 0 + W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.9156 + + 36 NaN NaN 117562.9 NaN 19969 4617 24587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24589 97.358 NaN 66303 35 0 6734.5 0.261 -1 0 33 550.2754783020398 549.2682018354398 1 551.2781372070312 MULTI HCD FTMS 0 0 0 24587 17759.337890625 0.9619540292752946 1 -0.01294708251953125 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89422.3 NaN 19970 4617 24587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24590 97.362 NaN 65815 35 0 7482.3 0.261 + -1 LSFECSWS 8 43 508.21197100911814 NaN 0 508.2118835449219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _LSFEC(Carbamidomethyl (C))SWS_ REV__ENST00000393196.7_1_17:49239254-49239476:+|nuORF 2.302733041254933 0.38822285293237185 2 A 1 -1 2.4743 0 0 0.24391 0 0 793.4564604735114 146.89690576724846 940.3533662407598 0 0 0 0 0 0 0 0 0 A 0.24391 - 1 + NaN NaN 98555.2 NaN 19971 4617 24587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24592 97.367 NaN 796420 35 0 205170 0.327 + 6918 FPVFATVIL 9 49 503.80217059817585 1005.5897882631517 2 503.8023986816406 MULTI HCD FTMS 0 0 0 24591 939078.375 0.6083297785611772 5 -0.087890625 1 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 50.855029805455786 0.030374663808198754 2 CTV{I|L}{I|L} 5 5 55.459 0 0 5.5151 0 0 458.2714100568375 0 458.2714100568375 0 41.963950151760656 0 0 0 1.25 0 0.8494850021680094 0 CTV{I|L}{I|L} 5.5151 - 105 NaN NaN 217745.8 NaN 19972 4618 24591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24593 97.371 NaN 904360 35 0 244960 0.261 + 4487 EYIQFVPLL 9 61 561.3156922565188 1120.6168315798375 2 561.31591796875 MULTI HCD FTMS 0 0 0 24591 291345.59375 0.024158305902095646 23 -0.4357757568359375 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 69.10491478415734 0.009377850133389008 2 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 6 3 64.201 0 0 5.7291 0 0 405.18895156074376 0 405.18895156074376 0 39.13934099835714 0 0 0 2.305462187404089 0 0 0 + Q{M(Oxidation (M))|F}VP{I|L}{I|L} 5.7291 + + 153 NaN NaN 235047.4 NaN 19973 4618 24591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24594 97.374 NaN 181050 35 0 16544 0.261 -1 SSCIAHFTW 9 58 554.7480233764153 NaN 0 554.7477416992188 PEAK HCD FTMS 0 0 0 24591 39332.58984375 0.5493763910853994 1 -0.02291107177734375 3 Carbamidomethyl (C) _SSC(Carbamidomethyl (C))IAHFTW_ ENST00000463447.5_1_17:39673213-39674704:-|nuORF 3.944395688203298 0.27613285122220627 2 K 1 -1 3.9794 0 0 0.35932 0 0 679.257447044043 297.1108492486938 976.3682962927369 0 0 0 0 0 0 0 0 0 K 0.35932 - 12 + NaN NaN 119246 NaN 19974 4618 24591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24595 97.378 NaN 241600 35 0 18977 0.261 + -1 YSIINSGCF 9 58 530.7411764873851 1059.4678000415702 2 530.7418212890625 MULTI HCD FTMS 0 0 0 24591 23898.8671875 0.6739820718263815 1 -0.02291107177734375 4 Carbamidomethyl (C) _YSIINSGC(Carbamidomethyl (C))F_ REV__ENSG00000150261|ENST00000279783|OR8K1;REV__OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}C{I|L}[KG]{[C(Carbamidomethyl (C))E]|[WC]}G{M(Oxidation (M))|F} 9 -1 + 35.242 0 0 3.3264 3.3264 85.822 0 0 0 14.228941179878525 7.802266144191215 7.802266144191215 9.730749808046333 0 1.110924374808178 0 0.3252574989159953 0 {M(Oxidation (M))|F}C{I|L}[KG]{[C(Carbamidomethyl (C))E]|[WC]}G{M(Oxidation (M))|F};{M(Oxidation (M))|F}C{I|L}[KG][WC(Carbamidomethyl (C))]{M(Oxidation (M))|F} 3.3264;2.408 -;- 243 + NaN NaN 123765.1 NaN 19975 4618 24591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24596 97.381 NaN 44854 35 0 4880.8 0.261 + -1 LTKKMIQRKKW 11 35 492.6343710697857 1474.881283809557 3 492.635009765625 MULTI HCD FTMS 0 0 0 24591 26683.255859375 0.3387749364274409 26 -0.49782562255859375 5 Oxidation (M) _LTKKM(Oxidation (M))IQRKKW_ REV__ENST00000264538.3_1_3:107925494-107932791:-|nuORF 0.09484139111097674 0.41850472438158626 2 C 1 -1 3.4949 0 0 0.23696 0 0 1001.6562984798577 367.19736658267817 1368.8536650625358 0 0 0 0 0 0 0 0 0 C 0.23696 - 1 + NaN NaN 104583.6 NaN 19976 4618 24591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24597 97.384 NaN 128710 35 0 25851 0.261 + -1 FRMHHCLI 8 45 557.2738808789306 1112.5332088246612 2 557.2841186523438 MULTI HCD FTMS 0 0 0 24591 13422.2919921875 0.5143339182277885 8 -0.14649200439453125 6 Carbamidomethyl (C) _FRMHHC(Carbamidomethyl (C))LI_ REV__ENSG00000197093|ENST00000360039|GAL3ST4 5.230669730166228 0.5342319408533849 2 {I|L}{I|L} 2 -1 17.959 0 0 1.6142 0 0 868.3757191388687 0 868.3757191388687 0 10.969100130080562 0 0 0 0 0 0 0 {I|L}{I|L} 1.6142 + + 5 NaN NaN 128280.7 NaN 19977 4618 24591 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24599 97.389 NaN 1203700 35 0 360250 0.327 + 32668 WPALEDLVL 9 62 528.2932843962553 1054.5720158593106 2 528.2923583984375 MULTI HCD FTMS 0 0 0 24598 347992.90625 0.27700489614144413 6 -0.1106414794921875 1 Unmodified _WPALEDLVL_ ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 25.399314129420986 0.14091189997036632 2 D{I|L}V{I|L} 4 5 40.974 0 0 3.8854 0 0 596.2944139185591 0 596.2944139185591 0 19.547509540478032 0 0 0 1 0 0.3807196863200844 0 + D{I|L}V{I|L} 3.8854 + + 100 NaN NaN 270042.9 NaN 19978 4619 24598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24600 97.394 NaN 1082300 35 0 191670 0.261 + 17335 LYPSTLFLL 9 69 533.8125712465235 1065.6105895598469 2 533.8129272460938 MULTI HCD FTMS 0 0 0 24598 269036.0625 0.3290904399580282 -1 0.02291107177734375 2 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 131.29775728308752 0.0005262696486345744 2 [Y{I|L}]PST{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 97.08 0 0 9.1103 9.1103 95.602 0 0 0 18.741436528314566 64.58388062011068 18.741436528314566 14.731975075880328 0 2.6237125054200234 1.3979400086720375 1.4802046884880937 0 + + [Y{I|L}]PST{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]PST{I|L}{I|L}{M(Oxidation (M))|F}{I|L};[Y{I|L}]PST{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]PSVVY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[VS]D{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]PSVV{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}[VS]D{I|L}{M(Oxidation (M))|F}{I|L} 9.1103;7.7278;7.1615;6.6075;5.4911;5.225;4.6587;4.5893;4.3168;3.2068 +;-;-;-;-;-;-;-;-;- + 615 NaN NaN 263512.4 NaN 19979 4619 24598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24601 97.397 NaN 227490 35 0 35131 0.261 + 18408 MPSQLDNLVL 10 42 565.3014083207396 NaN 0 565.3181762695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MPSQLDNLVL_ ENSG00000160094|ENST00000539719|ZNF362 3.5964929083625545 0.337106189561315 2 V{I|L} 2 8 10.969 0 0 0.97193 0 0 131.0619735010876 782.3511249569244 913.413098458012 0 0 0 0 0 0 0 0 0 + V{I|L} 0.97193 + + 7 + NaN NaN 133616.3 NaN 19980 4619 24598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24602 97.401 NaN 105230 35 0 27420 0.261 + 7729 FYLPGLAPVNF 11 39 619.3340385770359 NaN 0 619.31787109375 PEAK HCD FTMS 0 0 0 24598 11838.31640625 0.4170183032183009 2 -0.03252410888671875 4 Unmodified _FYLPGLAPVNF_ ENSG00000125304|ENST00000376387|TM9SF2;TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant 8.745405648335112 0.31731194618894887 2 A 1 10 16.99 0 0 1.3738 0 0 690.3732497835259 472.2186373346313 1162.5918871181573 0 0 0 0 0 1 0 0 0 + A 1.3738 + + 5 + NaN NaN 104295.5 NaN 19981 4619 24598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24603 97.404 NaN 48074 35 0 4539 0.261 + 24280 RYFLPPYTF 9 31 602.3137098977769 NaN 0 602.3139038085938 PEAK HCD FTMS 0 0 0 24598 7822.44921875 0.3161585514105156 1 -0.0195465087890625 5 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.2057823575117 0.2651744870083793 2 T 1 8 6.9897 0 0 0.58121 0 0 165.07681800432994 933.4582003229124 1098.5350183272424 0 0 0 0 0 0 0 0 0 + T 0.58121 + + 1 + NaN NaN 110938.3 NaN 19982 4619 24598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24605 97.409 NaN 72146 35 0 6043.2 0.327 -1 0 43 469.83035827666174 937.6461636201235 2 469.8304138183594 MULTI HCD FTMS 0 0 0 24604 21017.67578125 0.12649399992646196 21 -0.39331817626953125 1 NaN NaN 2 Q{I|L} 2 -1 19.464 0 0 2.0758 0 0 678.5052357404312 0 678.5052357404312 0 9.419628234359578 0 0 0 0 0 0 0 Q{I|L} 2.0758 - 4 NaN NaN 91644.8 NaN 19983 4620 24604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24606 97.413 NaN 75735 35 0 20355 0.261 -1 FMVMLFYQDF 10 37 452.87024316069096 NaN 0 452.8807373046875 PEAK HCD FTMS 0 0 0 24604 20613.109375 0.7411313491764764 -39 0.8015823364257812 2 Oxidation (M) _FMVM(Oxidation (M))LFYQDF_ ENST00000396821.7_1_22:38880557-38880716:-|nuORF 0.776531954647913 0.3395196853010637 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96373.7 NaN 19984 4620 24604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24607 97.417 NaN 81050 35 0 9490.4 0.261 -1 0 36 553.8298623715486 1105.6451718098972 2 553.8301391601562 MULTI HCD FTMS 0 0 0 24604 20425.365234375 0.4442481437670308 5 -0.091094970703125 3 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.63218 0 0 99.18860556892226 890.3483370416624 989.5369426105847 0 0 0 0 0 0 0 0 0 {I|L} 0.63218 - 1 + NaN NaN 107619.3 NaN 19985 4620 24604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24609 97.422 NaN 268590 35 0 16686 0.327 + 23796 RRPHSVLRRHQ 11 70 481.28353142384896 1440.828764871747 3 481.283447265625 MULTI HCD FTMS 0 0 0 24608 161296.890625 0.3795109614063529 30 -0.579559326171875 1 Unmodified _RRPHSVLRRHQ_ REV__ENSG00000141622|ENST00000269439|RNF165 1.1097533296519684 0.4140536653900533 2 T[KP]{[DS]|[MA]|[CV]|TT} 5 -1 10.017 0 0 0.69525 0 0 894.5101795880875 0 894.5101795880875 0 1.1658279773656233 0 0 0 0.805462187404089 0 0 0 T[KP]{[DS]|[MA]|[CV]|TT} 0.69525 - 19 NaN NaN 121879.2 NaN 19986 4621 24608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24610 97.426 NaN 565970 35 0 76643 0.261 + 29206 TYLDIPLVI 9 62 523.8101322804256 1045.605711627651 2 523.810302734375 MULTI HCD FTMS 0 0 0 24608 101718.59375 0.5470308614951024 1 -0.0228729248046875 2 Unmodified _TYLDIPLVI_ ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76-2|USP47;nc|ENSG00000170242|Q96K76|USP47 36.04419817259434 0.08350412372117409 2 [YT]VE{I|L} 5 6 33.561 0 0 3.2098 0 0 0 437.27732191762897 437.27732191762897 15.681029715683561 0 0 0 0 0.7887254899964358 1.6989700043360187 0.4247425010840047 0 [YT]VE{I|L} 3.2098 - 118 NaN NaN 171173.4 NaN 19987 4621 24608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24611 97.43 NaN 275210 35 0 78242 0.261 + 11302 IYLTFPVAMF 10 36 609.3176593529477 1216.6207657726952 2 609.317626953125 MULTI HCD FTMS 0 0 0 24608 110793.2890625 0.07399483461561805 38 -0.7159194946289062 3 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 88.90359156742426 0.0010865658313541904 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 82.312 0 0 6.7656 6.7656 94.222 0 0 0 5.764837301042718 76.82766571201022 5.764837301042718 44.13425655227236 0 2.8494850021680094 0 1.1421590589602533 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.7656;3.138 +;- + 105 NaN NaN 154454.9 NaN 19988 4621 24608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24612 97.433 NaN 282090 35 0 36480 0.262 + 6391 FPGRLRWP 8 52 514.793133251452 1027.571713569704 2 514.7933349609375 MULTI HCD FTMS 0 0 0 24608 67196.5546875 0.23271063128917197 8 -0.1623687744140625 4 Unmodified _FPGRLRWP_ REV__HDGF|p.E181Rfs*144|1|0.15|ENSG00000143321|chr1:156743827-156743827|C/-|frameshift_variant 12.531546534597751 0.5015908124873912 2 VTA{M(Oxidation (M))|F}VPE 7 -1 58.008 0 0 5.6451 0 0 266.15913588691564 0 266.15913588691564 0 32.791229100142445 0 0 0 1.3807196863200843 0 0 0 VTA{M(Oxidation (M))|F}VPE 5.6451 - 148 NaN NaN 148320.1 NaN 19989 4621 24608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24613 97.437 NaN 111890 35 0 6350 0.261 + 30832 VQAKIRKM 8 50 487.3029217628339 NaN 0 487.2933654785156 PEAK HCD FTMS 0 0 0 24608 7791.4931640625 0.6317311007940495 -1 0.01297760009765625 5 Unmodified _VQAKIRKM_ ENST00000531894.5_1_16:70011782-70023933:-|nuORF 2.302733041254933 0.38822285293237185 2 P 1 8 1.7827 0 0 0.1833 0 0 340.22796159031776 532.2819307916624 872.5098923819801 0 0 0 0 0 0 0 0 0 P 0.1833 - 2 + NaN NaN 126487.9 NaN 19990 4621 24608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24614 97.44 NaN 26498 35 0 2793.2 0.261 + 23387 RKWFIYCF 8 28 581.7948608398438 NaN 0 581.7948608398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _RKWFIYCF_ REV__ENSG00000249715|ENST00000624922|FER1L5;REV__nc|ENSG00000249715|A0AVI2-2|FER1L5;REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 5.230669730166228 0.38822285293237185 2 V 1 -1 0.3786 0 0 0.032622 0 0 597.2973618146499 461.1870211236938 1058.4843829383437 0 0 0 0 0 0 0 0 0 V 0.032622 - 1 + NaN NaN 110736.9 NaN 19991 4621 24608 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24616 97.445 NaN 192570 35 0 63283 0.327 -1 YENLCCLR 8 24 564.2526966138007 1126.4908402944013 2 564.2528076171875 MULTI HCD FTMS 0 0 0 24615 38710.80859375 0.8478590930495514 2 -0.02896881103515625 1 2 Carbamidomethyl (C) _YENLC(Carbamidomethyl (C))C(Carbamidomethyl (C))LR_ ENSG00000106245|ENST00000222969|BUD31;ENST00000466798.1_1_7:99013792-99015269:+|nuORF;nc|ENSG00000106245|P41223-2|BUD31 0.6014990680409731 0.5410999795511968 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118075.1 NaN 19992 4622 24615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24617 97.449 NaN 91272 35 0 10295 0.261 + 35526 YYGGQWFLF 9 42 590.7765826576338 1179.5386123820674 2 591.2783203125 MULTI HCD FTMS 0 0 0 24615 33712.1796875 0.3013497246644928 8 -0.1557769775390625 2 Unmodified _YYGGQWFLF_ ENST00000455359.5_2_22:35653519-35659991:+|nuORF 26.88365393820708 0.12808753336095696 2 W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4 5 45.433 0 0 3.8518 0 0 568.2258888832869 0 568.2258888832869 0 42.95880017344075 0 0 0 1.3494850021680094 0 0 0 + W{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.8518 + + 28 NaN NaN 121404.6 NaN 19993 4622 24615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24619 97.454 NaN 589300 35 0 54388 0.327 + 25673 SIACPSTAVIL 11 58 537.7968508304074 1073.5791487276147 2 537.7972412109375 MULTI HCD FTMS 0 0 0 24618 168362.015625 0.22925122766096184 3 -0.05860137939453125 1 Unmodified _SIACPSTAVIL_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000485650.5_1_13:28015203-28024670:-|nuORF 47.748688679222035 0.09066307675719942 2 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L} 8 7 74.474 0 0 6.937 0 0 0 128.0716197602243 128.0716197602243 58.989568978889935 0 0 0 0 2.5356668758921828 1.3010299956639813 1.274227503252014 0 [YT]{M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L} 6.937 - 175 NaN NaN 198232.8 NaN 19994 4623 24618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24620 97.459 NaN 478700 35 0 60629 0.261 + 17147 LYLPSFFTY 9 68 575.79444686376 1149.5743407943198 2 575.7943115234375 MULTI HCD FTMS 0 0 0 24618 51048.6875 0.005274066608266457 35 -0.6638946533203125 2 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 104.79918948944588 0.003791450360204016 2 [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY 9 0 + 80.045 0 0 6.963 6.963 94.937 0 0 0 20.67332707455691 50.49226842154184 20.67332707455691 55.60016905927596 0 2.6861818737241734 1.5228787452803376 0.6861818737241735 0 + + [Y{I|L}]{I|L}P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}TY;[Y{I|L}]{I|L}P{[ES]|[DT]|[{I|L}C]}{[ET]|[MV]}[QA] 6.963;2.1264 +;- + 454 NaN NaN 158676 NaN 19995 4623 24618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24621 97.462 NaN 297980 35 0 88075 0.261 + 33941 YLSAFLSSSL 10 48 544.2871478481047 1086.5597427630094 2 544.803955078125 MULTI HCD FTMS 0 0 0 24618 8188.43603515625 0.1535080394672679 8 -0.1624603271484375 3 Unmodified _YLSAFLSSSL_ ENST00000482172.5_1_13:21205203-21245170:+|nuORF 10.073929032068715 0.4168838835836452 2 [Y{I|L}][HS]P[RD]S 8 6 23.473 0 0 2.1603 0 0 0 128.0734379297235 128.0734379297235 8.524459091530403 0 0 0 0 0.3807196863200844 2 0 0 [Y{I|L}][HS]P[RD]S 2.1603 - 52 NaN NaN 144411.9 NaN 19996 4623 24618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24622 97.465 NaN 189680 35 0 25500 0.261 + 309 AFPEIFYTF 9 65 567.7787354088067 1133.5429178844133 2 567.7788696289062 MULTI HCD FTMS 0 0 0 24618 39537.9609375 0.039956316052922866 19 -0.3608245849609375 4 Unmodified _AFPEIFYTF_ ENSG00000196455|ENST00000356763|PIK3R4 30.636539890814138 0.10832830463492794 2 [YE]HK{M(Oxidation (M))|F}Y 6 7 45.45 0 0 4.0096 0 0 0 263.1031588190063 263.1031588190063 21.269184659718547 0 0 0 0 0.3054621874040891 2 0 0 [YE]HK{M(Oxidation (M))|F}Y 4.0096 - 232 + NaN NaN 113044.2 NaN 19997 4623 24618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24623 97.469 NaN 115870 35 0 11340 0.261 + 25636 SGVASYFIFL 10 60 552.2924610211763 1102.5703691091526 2 552.2926635742188 MULTI HCD FTMS 0 0 0 24618 14740.677734375 0.0350834213762663 -12 0.2281646728515625 5 Unmodified _SGVASYFIFL_ ENSG00000188869|ENST00000359440|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;nc|ENSG00000188869|Q7Z5M5-2|TMC3;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant 13.90604991867851 0.3810395177745597 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 4 6 38.928 0 0 3.5306 0 0 564.253676135732 0 564.253676135732 0 28.470325397914564 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{I|L} 3.5306 + + 35 NaN NaN 109337.5 NaN 19998 4623 24618 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24625 97.474 NaN 951730 35 0 155020 0.327 + 35136 YVFLSNLSL 9 83 528.2932843962553 1054.5720158593106 2 529.3003540039062 MULTI HCD FTMS 0 0 0 24624 265306.4375 0.6028450534225943 2 -0.039215087890625 1 Unmodified _YVFLSNLSL_ OR5B12|p.F59V|1|0.14|ENSG00000172362|chr11:58439977-58439977|A/C|missense_variant 28.486842064014134 0.11819662193267319 2 {[TV]|[{I|L}S]}[WP]E{I|L}{I|L}TP 9 7 + 43.896 0 0 4.1625 4.1625 87.491 0 0 0 10.748031033778751 12.970085414131301 10.748031033778751 12.912701583748245 0 0 1.5228787452803376 0.535666875892183 0 {[TV]|[{I|L}S]}[WP]E{I|L}{I|L}TP;[VP]WTE{I|L}{I|L}TP;[KT]Y{I|L}SM{I|L}S{I|L};{[TV]|[{I|L}S]}[WP]E{I|L}[TP]{I|L};[KT]Y{I|L}SMTV{I|L};[YV]{I|L}S{[VA]|[{I|L}G]}[YQ]{I|L};[YV]{I|L}S{[VA]|[{I|L}G]}[YG]A{I|L};[VP]WTE{I|L}[TP]{I|L};[KT]{NN|[MP]|[D{I|L}]|[EV]}{[YC]|[HE]}{I|L}S{I|L};[KT]Y{I|L}SS{I|L}{M(Oxidation (M))|F}P 4.1625;2.938;2.6815;2.2116;1.9019;1.5973;1.4291;0.98718;0.70395;0.65317 -;-;-;-;-;-;-;-;-;- 860 NaN NaN 243025.3 NaN 19999 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24626 97.478 NaN 82286 35 0 15965 0.261 -1 0 45 626.3127617741883 625.3054853075882 1 626.31298828125 MULTI HCD FTMS 0 0 0 24624 90471.375 0.7455209685208076 2 -0.039215087890625 2 NaN NaN 2 R 1 -1 5.4846 0 0 0.8771 0 0 201.02653740895386 265.1567455359139 466.18328294486776 0 0 0 0 0 0 0 0 0 R 0.8771 - 5 + NaN NaN 94273.1 NaN 20000 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24627 97.482 NaN 63666 35 0 8091.8 0.264 + 34112 YNPAGTAR 8 35 425.2146196853572 NaN 0 425.214599609375 PEAK HCD FTMS 0 0 0 24624 42830.50390625 0.6316843546513617 -21 0.4270477294921875 3 Unmodified _YNPAGTAR_ tr|U7SUT2|U7SUT2_FUSNULong-chainfattyacidtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00997PE=3SV=1 1.844237919475145 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110517.5 NaN 20001 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24628 97.485 NaN 78404 35 0 9318.5 0.261 -1 KYRRFCQL 8 25 585.813014219414 1169.6114755056278 2 585.8134155273438 MULTI HCD FTMS 0 0 0 24624 43822.57421875 0.5666878586952041 4 -0.0909271240234375 4 Carbamidomethyl (C) _KYRRFC(Carbamidomethyl (C))QL_ sp|P03195|DUT_EBVB9Deoxyuridine5'-triphosphatenucleotidohydrolaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DUTPE=1SV=1 12.531546534597751 0.5015908124873912 2 K{I|L} 2 -1 23.711 0 0 2.0273 0 0 910.4203064351005 0 910.4203064351005 0 23.711375162600703 0 0 0 0 0 0 0.4247425010840047 K{I|L} 2.0273 - 3 NaN NaN 96899.1 NaN 20002 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24629 97.488 NaN 76971 35 0 15526 0.264 -1 0 33 453.20957021525965 452.20229374865966 1 453.2097473144531 MULTI HCD FTMS 0 0 0 24624 46180.203125 0.88377772408621 20 -0.3905487060546875 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122806 NaN 20003 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24630 97.492 NaN 57372 35 0 4743.7 0.261 + 13949 KYRILLFFWSL 11 41 495.9587413998472 1484.8543947997416 3 495.9591064453125 MULTI HCD FTMS 0 0 0 24624 36959.80859375 0.1536775202064013 -31 0.62945556640625 6 Unmodified _KYRILLFFWSL_ REV__ENSG00000196376|ENST00000360388|SLC35F1;REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant 0.09484139111097674 0.41850472438158626 2 Y 1 -1 3.0989 0 0 0.2087 0 0 826.9155653093104 491.8509615533813 1318.7665268626918 0 0 0 0 0 0 0 0 0 Y 0.2087 + + 1 + NaN NaN 106930.6 NaN 20004 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24631 97.495 NaN 210450 35 0 23389 0.261 + 3969 EQRFRKKRRRS 11 62 516.309640365368 1545.9070916963037 3 516.3095703125 MULTI HCD FTMS 0 0 0 24624 35781.4375 0.883985006689203 -5 0.0843658447265625 7 Unmodified _EQRFRKKRRRS_ ENSG00000186854|ENST00000409520|TRABD2A;nc|ENSG00000186854|Q86V40-2|TRABD2A 0 0.41892066650488113 2 S{I|L}{I|L}E 4 11 20.538 0 0 1.3286 0 0 645.4116826160288 455.2485445611938 1100.6602271772226 0 0 0 0 0 0 0 0.3807196863200844 0 S{I|L}{I|L}E 1.3286 - 58 + NaN NaN 133218.6 NaN 20005 4624 24624 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24633 97.5 NaN 639220 35 0 67582 0.327 + 20675 PFLPASNLFF 10 71 576.8080800779595 1151.601607222719 2 576.8084106445312 MULTI HCD FTMS 0 0 0 24632 109531.6796875 0.5521367450682017 -4 0.07811737060546875 1 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 92.65332237495696 0.000798763162112469 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 73.254 0 0 6.3611 6.3611 90.962 0 0 0 17.98332479720628 43.6231836236621 17.98332479720628 13.411964496339301 0 2.5356668758921828 1.2218487496163564 0.3807196863200844 0.4247425010840047 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}P[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]{I|L}P[PG][QA]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[WP]D{I|L}[KS]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3611;5.1964;4.6931;3.5285;3.0096;2.5697 +;-;-;-;-;- + 759 NaN NaN 189567.2 NaN 20006 4625 24632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24634 97.505 NaN 91983 35 0 4418.6 0.261 + -1 KRRQLCVRKLM 11 48 510.6341176183331 1528.8805234551994 3 510.63427734375 MULTI HCD FTMS 0 0 0 24632 39234.640625 0.4269505117377865 -10 0.18563079833984375 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117343.2 NaN 20007 4625 24632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24635 97.508 NaN 54857 35 0 9149.8 0.261 + 17804 MFLICVFCVAV 11 35 622.8176879882812 NaN 0 622.8176879882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MFLICVFCVAV_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 3.5964929083625545 0.33191792882328314 2 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.4267464641997 274.0833834283813 1126.510129892581 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 16 + NaN NaN 118587.7 NaN 20008 4625 24632 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24637 97.513 NaN 445890 35 0 123710 0.327 + 4488 EYIQFVPLL 9 55 561.3156922565188 1120.6168315798375 2 561.3158569335938 MULTI HCD FTMS 0 0 0 24636 118986.4375 0.00986632651047459 31 -0.5791549682617188 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 45.69961567697781 0.039180348357221985 2 {M(Oxidation (M))|F}VP{I|L}{I|L} 5 4 57.206 0 0 5.1049 0 0 533.2479115216812 0 533.2479115216812 0 29.75895023531386 0 0 0 1.9247425010840047 0 0 0 + {M(Oxidation (M))|F}VP{I|L}{I|L} 5.1049 + + 134 NaN NaN 159110.4 NaN 20009 4626 24636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24638 97.517 NaN 256730 35 0 22573 0.261 + 13818 KYPSPFFVF 9 61 566.2976117687093 1130.5806706042185 2 566.2977294921875 MULTI HCD FTMS 0 0 0 24636 37249.265625 0.8516713934050969 6 -0.12012481689453125 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 SWV{M(Oxidation (M))|F} 4 6 28.576 0 0 2.5276 0 0 593.3213455083186 0 593.3213455083186 0 2.378428407800328 0 0 0 0.805462187404089 0 0 0 SWV{M(Oxidation (M))|F} 2.5276 - 100 + NaN NaN 121665.4 NaN 20010 4626 24636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24639 97.521 NaN 70167 35 0 15061 0.261 -1 TYNMVLNLL 9 34 548.7881584668881 1095.5617640005762 2 548.7901000976562 MULTI HCD FTMS 0 0 0 24636 59875.9375 0.5285776435572056 6 -0.12012481689453125 3 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 9.38312468134398 0.279288223203164 2 [YT]{M(Oxidation (M))|F} 3 -1 38.512 0 0 3.5153 0 0 0 681.3615206354124 681.3615206354124 19.048246627886982 0 0 0 0 0.805462187404089 2 0 0 [YT]{M(Oxidation (M))|F} 3.5153 - 11 + NaN NaN 101994.3 NaN 20011 4626 24636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24640 97.524 NaN 41622 35 0 6132.6 0.261 -1 0 24 605.2930478818841 604.2857714152841 1 605.291748046875 MULTI HCD FTMS 0 0 0 24636 29288.591796875 0.6906618402463726 -23 0.4662628173828125 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 95150.1 NaN 20012 4626 24636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24642 97.535 NaN 580820 35 0 110300 0.327 + 6919 FPVFATVIL 9 59 503.80217059817585 1005.5897882631517 2 503.80230712890625 MULTI HCD FTMS 0 0 0 24641 234085.671875 0.15163940383150995 14 -0.26667022705078125 1 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 42.09456458481378 0.05572955244001856 2 TV{I|L}{I|L} 4 5 51.414 0 0 5.1129 0 0 561.2950586550345 0 561.2950586550345 0 33.94016261540408 0 0 0 1.1861818737241734 0 0.7614393726401688 0 + TV{I|L}{I|L} 5.1129 + + 110 NaN NaN 194768.9 NaN 20013 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24643 97.54 NaN 439020 35 0 73403 0.261 + 17336 LYPSTLFLL 9 51 533.8125712465235 1065.6105895598469 2 533.8128662109375 MULTI HCD FTMS 0 0 0 24641 140846.09375 0.17228583606168854 7 -0.12673187255859375 2 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 97.07464715276575 0.004340583992084827 2 [Y{I|L}][PS]T{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 78.611 0 0 7.3771 7.3771 92.826 0 0 0 13.455612550363796 16.478174818886373 13.455612550363796 13.455612550363796 0 2.274227503252014 1.3979400086720375 1.079689690656103 0 + + [Y{I|L}][PS]T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}][PS]T{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}][PS]VVY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}T{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}][PS]VV{I|L}Y{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}VVY{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[CP]|[EA]}VV{I|L}Y{I|L} 7.3771;6.1144;4.7257;3.8286;3.463;2.9822;2.5658;1.7195 +;-;-;-;-;-;-;- + 162 NaN NaN 180172.4 NaN 20014 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24644 97.543 NaN 461590 35 0 61696 0.261 + 32058 VYQIFDTFF 9 49 590.2895468147767 1178.5645406963533 2 590.2893676757812 MULTI HCD FTMS 0 0 0 24641 132584.484375 0.12980614607592736 -8 0.1461944580078125 3 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 85.64151623876279 0.004640175941193596 2 [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 81.82 0 0 6.9424 6.9424 88.286 0 0 0 4.137342758552691 55.35457533920862 4.137342758552691 6.682437647924218 0 2.8494850021680094 0 0.4247425010840047 0.3494850021680094 + + [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][AG]{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}GVVT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.9424;6.3754;5.8645;4.529 +;-;-;- + 509 NaN NaN 164610 NaN 20015 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24645 97.546 NaN 140290 35 0 27526 0.261 -1 TYNMVLNLL 9 47 548.7881584668881 1095.5617640005762 2 548.788330078125 MULTI HCD FTMS 0 0 0 24641 36768.14453125 0.32458479993401157 7 -0.12673187255859375 4 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 13.90604991867851 0.24021115267848145 2 [YT]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}SC(Carbamidomethyl (C)){I|L}{I|L} 9 -1 + 39.695 0 0 3.6233 3.6233 85.852 0 0 0 16.736571341540063 4.9903715985340185 4.9903715985340185 9.208187539523756 0 1.2302046884880937 2 0 0 [YT]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}SC(Carbamidomethyl (C)){I|L}{I|L};[YT]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S[CG]{I|L}{I|L};[YT]{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}S[PA]A{M(Oxidation (M))|F} 3.6233;2.7828;2.022 -;-;- 91 + NaN NaN 129693.4 NaN 20016 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24646 97.55 NaN 187160 35 0 89239 0.261 + 6286 FPFNMQELVL 10 28 619.3179730865287 1236.6213932398573 2 619.3185424804688 MULTI HCD FTMS 0 0 0 24641 49963.52734375 0.7173788727337135 -2 0.035552978515625 5 Unmodified _FPFNMQELVL_ ENSG00000154945|ENST00000285243|ANKRD40 5.296884461304476 0.4472664531305844 2 V{I|L} 2 8 25.969 0 0 2.1 0 0 1006.4570887252142 0 1006.4570887252142 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.1 + + 13 NaN NaN 142643 NaN 20017 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24647 97.553 NaN 116840 35 0 12484 0.261 + 17390 LYQILQGIVF 10 45 597.350169227897 NaN 0 597.35009765625 PEAK HCD FTMS 0 0 0 24641 14739.7216796875 0.20376812416749712 10 -0.18852996826171875 6 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 27.628801355627647 0.21883835723996892 2 V{[VA]|[{I|L}G]}Q{I|L} 5 7 24.253 0 0 2.0334 0 0 165.07685105169395 514.2682589166624 679.3451099683564 0 0 0 0 0 1.805462187404089 0 0 0 V{[VA]|[{I|L}G]}Q{I|L} 2.0334 - 39 + NaN NaN 102468 NaN 20018 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24648 97.556 NaN 201240 35 0 21213 0.261 -1 AQHRILIFC 9 56 579.3141770280575 NaN 0 579.2940673828125 PEAK HCD FTMS 0 0 0 24641 12729.916015625 1 0 0 7 Carbamidomethyl (C) _AQHRILIFC(Carbamidomethyl (C))_ ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1 2.302733041254933 0.2840881193086663 2 {I|L}W 2 -1 6.4537 0 0 0.55798 0 0 605.3413534684213 249.08831201724846 854.4296654856697 0 0 0 0 0 0 0 0 0 {I|L}W 0.55798 - 34 + NaN NaN 119857.9 NaN 20019 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24649 97.56 NaN 63732 35 0 6195.8 0.262 -1 0 40 469.83035827666174 937.6461636201235 2 469.8302917480469 MULTI HCD FTMS 0 0 0 24641 25433.673828125 0.15307149890543997 28 -0.5175933837890625 8 NaN NaN 2 {I|L} 1 -1 10.044 0 0 1.0712 0 0 241.13189467656724 580.4083956354124 821.5402903119796 0 0 0 0 0 0.3054621874040891 0 0 0 {I|L} 1.0712 - 8 + NaN NaN 107945.7 NaN 20020 4627 24641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24651 97.565 NaN 289480 35 0 69011 0.327 + 35301 YWGTPIPVL 9 38 523.2895193012769 1044.5644856693536 2 523.8101806640625 MULTI HCD FTMS 0 0 0 24650 4038.920166015625 0.04699955292031604 11 -0.18201446533203125 1 Unmodified _YWGTPIPVL_ tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 7.910154910731844 0.2910521888787154 2 V{I|L} 2 7 21.454 0 0 2.0538 0 0 814.4025746076187 0 814.4025746076187 0 14.463950151760656 0 0 0 0.5 0 0 0 + V{I|L} 2.0538 + + 20 NaN NaN 137834.9 NaN 20021 4628 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24652 97.569 NaN 149280 35 0 12016 0.261 + 32769 WRNRQKNKRR 10 50 481.28353142384896 1440.828764871747 3 481.2835388183594 MULTI HCD FTMS 0 0 0 24650 99447.1484375 0.2339864256923639 37 -0.7004928588867188 2 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 2 K 1 9 0.71334 0 0 0.049509 0 0 894.5028504203782 415.19712244205317 1309.6999728624314 0 0 0 0 0 0 0 0 0 + K 0.049509 + + 2 + NaN NaN 133036.9 NaN 20022 4628 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24653 97.573 NaN 103970 35 0 5713.7 0.261 + 11195 IYIWDLNNF 9 54 599.3010552583753 1196.5875575835505 2 599.3023681640625 MULTI HCD FTMS 0 0 0 24650 10690.8388671875 0.2486271636457817 6 -0.09763336181640625 3 Unmodified _IYIWDLNNF_ ENSG00000138674|ENST00000395310|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A 20.453626601364224 0.18364154288633264 2 P{I|L}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 5 6 12.24 0 0 1.0229 0 0 561.2496802415568 0 561.2496802415568 0 -1.7492574557141278 -1.7492574557141278 0 0 0 0 0 0 P{I|L}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.0229 - 140 + NaN NaN 118545.1 NaN 20023 4628 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24654 97.576 NaN 31126 35 0 5862 0.262 -1 VISCIMCV 8 25 499.23161952872306 NaN 0 499.21551513671875 PEAK HCD FTMS 0 0 0 24650 4614.68017578125 1 0 0 4 2 Carbamidomethyl (C),Oxidation (M) _VISC(Carbamidomethyl (C))IM(Oxidation (M))C(Carbamidomethyl (C))V_ ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9 0.7936320650641473 0.38822285293237185 2 H 1 -1 2.4743 0 0 0.24831 0 0 459.2105402275649 397.16694055728755 856.3774807848524 0 0 0 0 0 0 0 0 0 H 0.24831 - 1 + NaN NaN 89638.1 NaN 20024 4628 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24655 97.579 NaN 155460 35 0 11577 0.261 + 3277 EEEKHASQMI 10 46 601.2806252725334 1200.5466976118666 2 601.78173828125 MULTI HCD FTMS 0 0 0 24650 16583.6953125 0.250395461272398 -7 0.14276885986328125 5 Unmodified _EEEKHASQMI_ ENSG00000109762|ENST00000652585|SNX25;nc|ENSG00000109762|Q9H3E2-2|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25 14.405379775768559 0.37636895476610294 2 [YV]Q{I|L}{M(Oxidation (M))|F}D 6 9 71.643 0 0 5.9675 0 0 0 432.1536043756469 432.1536043756469 40.44531259372398 0 0 0 0 2.1237125054200234 2 0 0.3494850021680094 [YV]Q{I|L}{M(Oxidation (M))|F}D 5.9675 - 377 + NaN NaN 114820.1 NaN 20025 4628 24650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24657 97.584 NaN 768100 35 0 131780 0.327 + 22880 QYPFPLPVF 9 56 554.2972430662492 1106.5799331992982 2 554.2974243164062 MULTI HCD FTMS 0 0 0 24656 304069.34375 0.28710095930280594 -10 0.19489288330078125 1 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 89.42679046578446 0.004540987215715461 2 P{[CA]|SS}P{I|L}PV{M(Oxidation (M))|F} 8 4 60.878 0 0 5.5015 0 0 264.1461659162125 0 264.1461659162125 0 39.680475292681265 0 0 0 1.25 0 1.1747425010840047 0 P{[CA]|SS}P{I|L}PV{M(Oxidation (M))|F} 5.5015 - 309 NaN NaN 213968.8 NaN 20026 4629 24656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24658 97.589 NaN 73732 35 0 5677.7 0.261 + -1 FSRLNRRRRR 10 44 486.95896564295595 1457.8550675290678 3 486.9593200683594 MULTI HCD FTMS 0 0 0 24656 80221.640625 0.43722373782168406 38 -0.70452880859375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FSRLNRRRRR_ REV__ENSG00000072315|ENST00000262839|TRPC5;REV__TRPC5|p.G689R|1|0.24|ENSG00000072315|chrX:111781970-111781970|C/G|missense_variant 0.12286491777506015 0.4746533611140575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103337.5 NaN 20027 4629 24656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24659 97.592 NaN 105490 35 0 12057 0.261 + 27597 TAFVEPFVIL 10 37 568.323256778346 1134.631960623492 2 568.323974609375 MULTI HCD FTMS 0 0 0 24656 27805.388671875 0.8313246996713792 1 -0.0162811279296875 3 Unmodified _TAFVEPFVIL_ ENSG00000174437|ENST00000539276|ATP2A2;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1 13.90604991867851 0.3810395177745597 2 {M(Oxidation (M))|F}KW{I|L}{I|L} 5 7 42.959 0 0 3.7861 0 0 429.1888649191692 0 429.1888649191692 0 34.58699520843611 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}KW{I|L}{I|L} 3.7861 - 39 NaN NaN 112197 NaN 20028 4629 24656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24660 97.596 NaN 120660 35 0 14199 0.261 + 32044 VYQASVGFVCE 11 39 601.2806252725334 1200.5466976118666 2 601.2806396484375 MULTI HCD FTMS 0 0 0 24656 34029.49609375 0.30284767972026444 -6 0.129913330078125 4 Unmodified _VYQASVGFVCE_ ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3 12.240655878213236 0.35042917576941135 2 [YV]Q{I|L}{M(Oxidation (M))|F}D 6 7 67.58 0 0 5.6291 0 0 0 432.1552828424438 432.1552828424438 37.134928107446186 0 0 0 0 1.774227503252014 2 0 0.3807196863200844 [YV]Q{I|L}{M(Oxidation (M))|F}D 5.6291 - 174 + NaN NaN 109237.3 NaN 20029 4629 24656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24662 97.601 NaN 256880 35 0 39962 0.327 + 35137 YVFLSNLSL 9 62 528.2932843962553 1054.5720158593106 2 529.3001098632812 MULTI HCD FTMS 0 0 0 24661 83025.2890625 0.18865499567951172 8 -0.13652801513671875 1 Unmodified _YVFLSNLSL_ OR5B12|p.F59V|1|0.14|ENSG00000172362|chr11:58439977-58439977|A/C|missense_variant 15.847184025352803 0.2234401846867398 2 {I|L}{I|L}TP 4 7 24.157 0 0 2.2907 0 0 612.2898535482852 0 612.2898535482852 0 4.490925311194186 0 0 0 0 0 0 0 {I|L}{I|L}TP 2.2907 - 125 NaN NaN 131123.6 NaN 20030 4630 24661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24663 97.605 NaN 901620 35 0 89007 0.261 + 25674 SIACPSTAVIL 11 74 537.7968508304074 1073.5791487276147 2 537.7971801757812 MULTI HCD FTMS 0 0 0 24661 116925.6328125 0.15921254427723872 10 -0.1754608154296875 2 Unmodified _SIACPSTAVIL_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000485650.5_1_13:28015203-28024670:-|nuORF 56.17704186161178 0.05605286262343611 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 7 6 79.105 0 0 7.3683 0 0 264.1107655255875 0 264.1107655255875 0 65.17683537374076 0 0 0 2.5356668758921828 0 1.579689690656103 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}TAV{I|L}{I|L} 7.3683 - 332 NaN NaN 241082.3 NaN 20031 4630 24661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24664 97.609 NaN 402440 35 0 36973 0.261 + 16960 LYIAYQFLL 9 57 572.3257892324872 1142.6370255317743 2 572.3263549804688 MULTI HCD FTMS 0 0 0 24661 36189.64453125 0.38069802006846737 1 -0.016265869140625 3 Unmodified _LYIAYQFLL_ ENSG00000136824|ENST00000374793|SMC2;nc|ENSG00000136824|O95347-2|SMC2 67.34385681178166 0.00994769994983633 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVYQ{M(Oxidation (M))|F}{I|L}{I|L} 9 3 + 70.921 0 0 6.2068 6.2068 84.73 0 0 0 1.1037070061334475 14.61635608164464 1.1037070061334475 1.1037070061334475 0 1.8494850021680094 0 0 0.3252574989159953 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVYQ{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]{I|L}AYQ{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}TVY[AG]{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}]{I|L}AY[AG]{M(Oxidation (M))|F}{I|L}{I|L} 6.2068;6.1102;5.1163;5.0197 -;+;-;- + 465 NaN NaN 167811.3 NaN 20032 4630 24661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24665 97.612 NaN 134040 35 0 20385 0.261 + 17394 LYQKRPHF 8 52 544.8036405609533 1087.5927281887066 2 544.8046875 MULTI HCD FTMS 0 0 0 24661 21076.484375 0.08911018503000155 10 -0.1754608154296875 4 Unmodified _LYQKRPHF_ REV__ENST00000572259.1_1_17:578096-579572:-|nuORF 10.183394434864962 0.5188676124868831 2 [Y{I|L}]{[RE]|[WV]}{M(Oxidation (M))|F}{I|L} 6 -1 24.882 0 0 2.2878 0 0 0 263.10175501041255 263.10175501041255 11.387437564371012 0 0 0 0 0.4247425010840047 2 0 0 [Y{I|L}]{[RE]|[WV]}{M(Oxidation (M))|F}{I|L} 2.2878 - 103 + NaN NaN 114434.6 NaN 20033 4630 24661 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24667 97.617 NaN 119690 35 0 7537.8 0.327 + 22493 QRQRHVRLHQK 11 57 495.9587413998472 1484.8543947997416 3 495.9587097167969 MULTI HCD FTMS 0 0 0 24666 82186.25 0.34172739458394125 -24 0.48195648193359375 1 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.5059551277355931 0.4167017191902429 2 V 1 -1 1.2591 0 0 0.084793 0 0 1026.582954225326 356.17499719791255 1382.7579514232384 0 0 0 0 0 0 0 0 0 V 0.084793 + + 4 + NaN NaN 118025.7 NaN 20034 4631 24666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24668 97.621 NaN 101350 35 0 10373 0.261 + 13615 KYPENFFLL 9 45 585.813014219414 1169.6114755056278 2 585.8131713867188 MULTI HCD FTMS 0 0 0 24666 31306.208984375 0.4048335555246638 11 -0.1983642578125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3715687482437 0 778.3715687482437 0 24.20818753952375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 50 NaN NaN 108737.7 NaN 20035 4631 24666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24669 97.625 NaN 382930 35 0 23869 0.261 + -1 CLSFFLPVF 9 75 565.2893903010677 1128.5642276689352 2 565.7905883789062 MULTI HCD FTMS 0 0 0 24666 24263.734375 0.25252159122138584 -8 0.1624603271484375 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))LSFFLPVF_ REV__ENST00000575524.1_1_17:4846390-4846588:+|nuORF 24.67388899826682 0.14717941214954053 2 MV{I|L}{[DA]|[EG]}[HT]PV{M(Oxidation (M))|F} 10 -1 + 33.822 0 0 2.9969 2.9969 60.088 0 0 0 6.478174818886373 1.291615863770872 1.291615863770872 0 0 0.6747425010840047 0 0.3252574989159953 0 MV{I|L}{[DA]|[EG]}[HT]PV{M(Oxidation (M))|F};MV{I|L}[VS][HT]PV{M(Oxidation (M))|F};MV{I|L}WM[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F};YQT[KA]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{M(Oxidation (M))|F};MV{I|L}[{M(Oxidation (M))|F}T]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{M(Oxidation (M))|F};MP{I|L}{[MG]|[TS]}[HT]PV{M(Oxidation (M))|F};YQ{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[{I|L}V];MV{I|L}{[DA]|[EG]}[HT]M[{I|L}V];YKT[KA]{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{M(Oxidation (M))|F};YQT[KA][C(Carbamidomethyl (C)){M(Oxidation (M))|F}][{I|L}V] 2.9969;2.9969;2.8185;2.4301;2.2001;2.1299;1.9191;1.826;1.2773;1.2592 -;-;-;-;-;-;-;-;-;- 216 + NaN NaN 166419.3 NaN 20036 4631 24666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24670 97.628 NaN 41706 35 0 7131.7 0.261 + -1 YNIKHFFMK 9 30 622.3168549756452 NaN 0 622.3202514648438 PEAK HCD FTMS 0 0 0 24666 15712.744140625 0.6125757607945879 4 -0.07141876220703125 4 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 852.4283744026592 274.0825289361938 1126.510903338853 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 117820 NaN 20037 4631 24666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24672 97.633 NaN 559220 35 0 71331 0.327 + 20676 PFLPASNLFF 10 70 576.8080800779595 1151.601607222719 2 576.8082275390625 MULTI HCD FTMS 0 0 0 24671 191715.578125 0.966416433919494 3 -0.05515289306640625 1 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 72.96794272382148 0.014068588219715357 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 0 + 70.155 0 0 6.092 6.092 90.531 0 0 0 18.77513725768253 40.470289513353066 18.77513725768253 13.411964496339301 0 2.305462187404089 1.3010299956639813 0 0.4247425010840047 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[PA]SGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.092;4.9273 +;- + 318 NaN NaN 182152.1 NaN 20038 4632 24671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24673 97.638 NaN 117830 35 0 6666.9 0.261 + -1 KRRQLCVRKLM 11 57 510.6341176183331 1528.8805234551994 3 510.9688720703125 MULTI HCD FTMS 0 0 0 24671 58371.8046875 0.9772634510732993 -2 0.03253173828125 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 {I|L}Y 2 -1 9.464 0 0 0.61901 0 0 640.4079762840154 609.3056124322874 1249.7135887163026 0 0 0 0 0 0 0 0 0 {I|L}Y 0.61901 - 3 + NaN NaN 103742.7 NaN 20039 4632 24671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24674 97.641 NaN 139960 35 0 10303 0.261 + 11007 IYEPNFIFF 9 41 595.2999697839832 1188.5853866347663 2 595.2990112304688 MULTI HCD FTMS 0 0 0 24671 42869.64453125 1 0 0 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 29.081581746732265 0.1154664336125038 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 34.253 0 0 2.8818 0 0 763.3524539211804 0 763.3524539211804 0 11.32068444291761 0 0 0 0.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8818 + + 21 NaN NaN 115512.1 NaN 20040 4632 24671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24675 97.644 NaN 83884 35 0 8803 0.261 + 15739 LPFFPDFVT 9 39 541.7813923582081 1081.5482317832161 2 541.7811889648438 MULTI HCD FTMS 0 0 0 24671 17362.150390625 0.58396256825466 -3 0.0488128662109375 4 Unmodified _LPFFPDFVT_ ENSG00000104142|ENST00000220509|VPS18 7.289230182591677 0.29575926068275815 2 VT 2 7 20.969 0 0 1.9388 0 0 863.4201527326187 0 863.4201527326187 0 7.7815125038364386 0 0 0 0 0 0 0 + VT 1.9388 + + 10 NaN NaN 104397.7 NaN 20041 4632 24671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24676 97.648 NaN 65668 35 0 8933.4 0.261 + 33216 YFDVEPFVF 9 33 581.7765612852725 NaN 0 582.174560546875 PEAK HCD FTMS 0 0 0 24671 5579.48046875 0.2946874245665867 -1 0.016265869140625 5 Unmodified _YFDVEPFVF_ ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF;nc|ENSG00000103510|Q9H7Z6-2|KAT8 7.289230182591677 0.2599242500475609 2 E 1 8 9.6041 0 0 0.82684 0 0 524.2254725687886 505.2459708139705 1029.4714433827592 0 0 0 0 0 0.5 0 0 0 + E 0.82684 + + 1 + NaN NaN 95127.3 NaN 20042 4632 24671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24678 97.653 NaN 307540 35 0 76772 0.327 + 4489 EYIQFVPLL 9 50 561.3156922565188 1120.6168315798375 2 561.3158569335938 MULTI HCD FTMS 0 0 0 24677 116509.65625 0.009660952410527094 38 -0.7238082885742188 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 47.748688679222035 0.03472022231463587 2 Q{M(Oxidation (M))|F}VP{I|L}{I|L} 6 3 40.635 0 0 3.6261 0 0 405.18980605293126 0 405.18980605293126 0 27.140012553530966 0 0 0 2.048455006504028 0 0 0 + Q{M(Oxidation (M))|F}VP{I|L}{I|L} 3.6261 + + 147 NaN NaN 137888.8 NaN 20043 4633 24677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24679 97.657 NaN 51593 35 0 7374.8 0.261 + 30359 VLHGLLQSL 9 29 490.30130043237097 NaN 0 490.2643737792969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VLHGLLQSL_ REV__ENST00000407418.7_1_22:39259662-39259899:-|nuORF 0.45834013312273997 0.29302578994899664 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93719.7 NaN 20044 4633 24677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24681 97.662 NaN 1376000 35 0 197920 0.327 + 32059 VYQIFDTFF 9 56 590.2895468147767 1178.5645406963533 2 590.2899780273438 MULTI HCD FTMS 0 0 0 24680 589610.125 0.5772547095112975 -1 0.00968170166015625 1 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 147.05914393524117 1.1935124485855994E-05 2 [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 110.23 0 0 9.3531 9.3531 93.687 0 0 0 1.6330312844383599 1.6330312844383599 1.6330312844383599 9.208187539523749 0 3.2302046884880937 1.3979400086720375 1.5356668758921828 0 + + [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][AG]{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YQ]V{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]N{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]GG{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}AAT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}Q[YV];[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}Q[YV] 9.3531;8.5717;7.4797;7.0787;6.7358;6.2974;5.3536;4.3751;2.571;2.4216 +;-;-;-;-;-;-;-;-;- + 777 + NaN NaN 304569.8 NaN 20045 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24682 97.666 NaN 567570 35 0 67543 0.261 + 6920 FPVFATVIL 9 60 503.80217059817585 1005.5897882631517 2 503.80218505859375 MULTI HCD FTMS 0 0 0 24680 108654.265625 0.07038563245307781 21 -0.39086151123046875 2 Unmodified _FPVFATVIL_ ENSG00000073111|ENST00000265056|MCM2;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF 28.486842064014134 0.11819662193267319 2 CTV{I|L}{I|L} 5 5 45.639 0 0 4.5386 0 0 458.2728443830094 0 458.2728443830094 0 27.055956771530028 0 0 0 0.7302046884880937 0 0.7614393726401688 0 CTV{I|L}{I|L} 4.5386 - 97 NaN NaN 179104.4 NaN 20046 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24683 97.67 NaN 142120 35 0 32104 0.261 + 11303 IYLTFPVAMF 10 44 609.3176593529477 1216.6207657726952 2 609.317138671875 MULTI HCD FTMS 0 0 0 24680 67304.3671875 0.04495015502372628 51 -0.97308349609375 3 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 43.85829265575387 0.11192494793849486 2 {M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 43.148 0 0 3.5466 0 0 490.27879531074376 0 490.27879531074376 0 36.15865011156764 0 0 0 1.9247425010840047 0 0 0 + {M(Oxidation (M))|F}[VP]A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.5466 + + 30 NaN NaN 112515.3 NaN 20047 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24684 97.673 NaN 119960 35 0 18542 0.261 + 17337 LYPSTLFLL 9 42 533.8125712465235 1065.6105895598469 2 533.8126831054688 MULTI HCD FTMS 0 0 0 24680 43915.25 0.05371803619586055 14 -0.2969818115234375 4 Unmodified _LYPSTLFLL_ ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB 42.09456458481378 0.05572955244001856 2 [Y{I|L}][DV]A{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 9 3 + 46.811 0 0 4.3929 4.3929 87.123 0 0 0 5.708793562462446 46.81085944474624 5.708793562462446 10.445312593723976 0 1.7302046884880937 1.2218487496163564 0 0 [Y{I|L}][DV]A{I|L}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[ET]|[MV]}A{I|L}{M(Oxidation (M))|F}{I|L}{I|L} 4.3929;3.4126 -;- 59 NaN NaN 108479.3 NaN 20048 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24685 97.677 NaN 170960 35 0 50427 0.261 -1 DSHVHMCFK 9 45 580.7529878311313 1159.4914227290626 2 580.7529907226562 MULTI HCD FTMS 0 0 0 24680 25154.55859375 0.6076818032075112 -1 0.00968170166015625 5 Carbamidomethyl (C) _DSHVHMC(Carbamidomethyl (C))FK_ nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934|NEDD4 1.6526216038709556 0.33848895094777925 2 H[WP] 3 -1 10.458 0 0 0.90191 0 0 721.3018302991783 0 721.3018302991783 0 10.45757490560675 0 0 0 0 0 0 0 H[WP] 0.90191 - 4 + NaN NaN 111922.8 NaN 20049 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24686 97.68 NaN 139230 35 0 9077.3 0.261 -1 LYICESQFL 9 50 586.7867715491882 1171.5589901651763 2 587.2904052734375 MULTI HCD FTMS 0 0 0 24680 41369.77734375 0.7600905391302626 8 -0.1528778076171875 6 Carbamidomethyl (C) _LYIC(Carbamidomethyl (C))ESQFL_ ENSG00000205045|ENST00000628453|SLFN12L;nc|ENSG00000205045|Q6IEE8-2|SLFN12L 14.838274106304384 0.23215694253501695 2 [Y{I|L}]{I|L}{M(Oxidation (M))|F}N{[DA]|[EG]}[PG]Y 10 -1 + 51.884 0 0 4.4287 4.4287 84.706 0 0 0 16.43430519734885 25.197180143148614 16.43430519734885 7.7815125038364386 0 1 2 0 0 [Y{I|L}]{I|L}{M(Oxidation (M))|F}N{[DA]|[EG]}[PG]Y;[Y{I|L}]{I|L}N{M(Oxidation (M))|F}{[DA]|[EG]}[PG]Y;[Y{I|L}][MD]NE{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};[Y{I|L}]{I|L}N{[QS]|[NT]}[NP][HS];[Y{I|L}][MD]GGE{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[YD]|[{M(Oxidation (M))|F}M]}NE{I|L}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]} 4.4287;3.7644;3.0807;2.8282;2.2947;0.68986 -;-;-;-;-;- 321 NaN NaN 111972.3 NaN 20050 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24687 97.683 NaN 83141 35 0 18473 0.261 + 11416 IYPSLIYII 9 33 547.8290097193445 1093.643466505489 2 547.8287353515625 MULTI HCD FTMS 0 0 0 24680 23358.83203125 0.49015254098360655 -5 0.078033447265625 7 Unmodified _IYPSLIYII_ ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;nc|ENSG00000177058|Q8NBW4-4|SLC38A9 4.75600775471527 0.31496297302216103 2 V 1 9 10.485 0 0 0.95868 0 0 686.4023349335115 305.15839563541255 991.5607305689241 0 0 0 0 0 0.5 0 0 0 V 0.95868 - 4 + NaN NaN 102562.3 NaN 20051 4634 24680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24689 97.688 NaN 76177 35 0 9406.4 0.327 + 29321 TYNNPVIYI 9 41 548.7881584668881 1095.5617640005762 2 549.2899780273438 MULTI HCD FTMS 0 0 0 24688 20713.646484375 0.2951134173671401 15 -0.2969207763671875 1 Unmodified _TYNNPVIYI_ nc|ENSG00000249948|Q9H227|GBA3 10.823927491677226 0.26684000660059787 2 [YT]{M(Oxidation (M))|F} 3 7 32.76 0 0 2.9902 0 0 0 681.3605440729124 681.3605440729124 11.790521660407123 0 0 0 0 0.3807196863200844 2 0 0 [YT]{M(Oxidation (M))|F} 2.9902 - 7 + NaN NaN 97812 NaN 20052 4635 24688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24690 97.693 NaN 113110 35 0 13405 0.261 + 26304 SRRRKKRFRQE 11 48 516.309640365368 1545.9070916963037 3 516.30908203125 MULTI HCD FTMS 0 0 0 24688 29317.814453125 0.7243003695829301 6 -0.11400604248046875 2 Unmodified _SRRRKKRFRQE_ REV__ENSG00000186854|ENST00000409520|TRABD2A;REV__nc|ENSG00000186854|Q86V40-2|TRABD2A 0.09484139111097674 0.41850472438158626 2 H 1 -1 1.9897 0 0 0.12871 0 0 913.546509276185 492.2645357721313 1405.8110450483164 0 0 0 0 0 0 0 0 0 H 0.12871 - 4 + NaN NaN 107687 NaN 20053 4635 24688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24691 97.696 NaN 89535 35 0 34291 0.261 + 17791 MFDYLHLSVI 10 23 619.3179730865287 1236.6213932398573 2 619.3187866210938 MULTI HCD FTMS 0 0 0 24688 31219.0625 0.44824489091751196 6 -0.11400604248046875 3 Unmodified _MFDYLHLSVI_ FAM135B|p.F159L|1|0.15|ENSG00000147724|chr8:138250906-138250906|G/T|missense_variant 1.4819007175156935 0.4674597685733628 2 V{I|L} 2 8 20.969 0 0 1.6957 0 0 1006.4582019764573 0 1006.4582019764573 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 1.6957 + + 1 NaN NaN 100705.4 NaN 20054 4635 24688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24692 97.7 NaN 84848 35 0 19697 0.264 -1 0 33 453.2096203246 452.202343858 1 453.20947265625 MULTI HCD FTMS 0 0 0 24688 32099.224609375 0.6632317428494408 -20 0.37384796142578125 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101752.7 NaN 20055 4635 24688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24693 97.703 NaN 56932 35 0 4711.5 0.261 + 11273 IYLRQRWM 8 37 583.3170776367188 NaN 0 583.3170776367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _IYLRQRWM_ ENSG00000094755|ENST00000265294|GABRP 10.183394434864962 0.38822285293237185 2 {I|L} 1 7 11.99 0 0 1.0295 0 0 775.3889779767593 273.1239412897094 1048.5129192664688 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.0295 + + 1 + NaN NaN 113653.5 NaN 20056 4635 24688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24695 97.708 NaN 110990 35 0 8633 0.327 + 22689 QWSRLRRRAGR 11 58 481.28353142384896 1440.828764871747 3 481.2839050292969 MULTI HCD FTMS 0 0 0 24694 73243.7109375 0.17233308743368486 45 -0.8666610717773438 1 Unmodified _QWSRLRRRAGR_ REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF 0.4545168274142398 0.41692731010159206 2 K 1 -1 1.5938 0 0 0.11062 0 0 1026.5842102836593 283.1180513971313 1309.7022616807906 0 0 0 0 0 0 0 0 0 K 0.11062 - 4 + NaN NaN 123236.9 NaN 20057 4636 24694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24696 97.712 NaN 195600 35 0 38055 0.261 + 29207 TYLDIPLVI 9 41 523.8101322804256 1045.605711627651 2 523.809814453125 MULTI HCD FTMS 0 0 0 24694 31474.314453125 0.16926523180783473 16 -0.309844970703125 2 Unmodified _TYLDIPLVI_ ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76-2|USP47;nc|ENSG00000170242|Q96K76|USP47 16.942295170755138 0.21397866736869717 2 V{I|L} 2 7 25.969 0 0 2.4836 0 0 815.440233299025 0 815.440233299025 0 18.979400086720375 0 0 0 0.5 0 0 0 + V{I|L} 2.4836 + + 8 NaN NaN 116252.4 NaN 20058 4636 24694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24697 97.716 NaN 57352 35 0 6151.8 0.261 -1 0 34 605.2930478818841 604.2857714152841 1 605.2938232421875 MULTI HCD FTMS 0 0 0 24694 35996.03515625 0.8488317927679045 -13 0.25347900390625 3 NaN NaN 2 YYW 3 -1 8.9524 0 0 1.4815 0 0 0 89.03995777686535 89.03995777686535 8.952424927286843 0 0 0 0 0 0 0 0 YYW 1.4815 - 4 NaN NaN 103918.7 NaN 20059 4636 24694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24698 97.719 NaN 95775 35 0 6493.3 0.261 + 14985 LLKPQRKVTL 10 60 598.3973770137701 NaN 0 598.2818603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LLKPQRKVTL_ ENSG00000165633|ENST00000332853|VSTM4 0.4007161486938917 0.3398413315442166 2 {M(Oxidation (M))|F}TD{M(Oxidation (M))|F} 4 10 15.662 0 0 1.3109 0 0 181.2990742406276 500.2513826959594 681.550456936587 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}TD{M(Oxidation (M))|F} 1.3109 - 52 + NaN NaN 123599.1 NaN 20060 4636 24694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24700 97.724 NaN 1665100 35 0 293860 0.327 + 22881 QYPFPLPVF 9 63 554.2972430662492 1106.5799331992982 2 554.2974853515625 MULTI HCD FTMS 0 0 0 24699 807548.4375 0.7624837421307191 -2 0.03586578369140625 1 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 114.94377779790601 0.0021353177819039447 2 [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F} 9 0 + 84.536 0 0 7.6394 7.6394 95.219 0 0 0 58.249256301612746 14.973024840566467 14.973024840566467 31.760912590556813 0 2.8494850021680094 1.5228787452803376 0 0 + + [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F};[YQ]P{M(Oxidation (M))|F}P[VP]{I|L}{M(Oxidation (M))|F} 7.6394;4.7692 +;- + 263 + NaN NaN 356453.2 NaN 20061 4637 24699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24701 97.729 NaN 169020 35 0 17930 0.261 + 32045 VYQASVGFVCE 11 48 601.2806252725334 1200.5466976118666 2 601.2814331054688 MULTI HCD FTMS 0 0 0 24699 29274.46484375 0.2605299746007833 2 -0.0225830078125 2 Unmodified _VYQASVGFVCE_ ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3 20.41453444215458 0.279209903849948 2 VYQ{I|L}{M(Oxidation (M))|F}D 6 7 86.815 0 0 7.2313 0 0 0 432.15351282291255 432.15351282291255 51.37009080640347 0 0 0 0 1.774227503252014 2 0.3494850021680094 0.3807196863200844 VYQ{I|L}{M(Oxidation (M))|F}D 7.2313 - 246 + NaN NaN 132169.4 NaN 20062 4637 24699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24702 97.732 NaN 52307 35 0 6645.4 0.262 -1 0 44 486.95896564295595 1457.8550675290678 3 486.9583740234375 MULTI HCD FTMS 0 0 0 24699 31116.48828125 0.16959098826972854 46 -0.8759994506835938 3 NaN NaN 2 {I|L} 1 -1 3.4949 0 0 0.23973 0 0 990.5589748523226 351.19196497135005 1341.7509398236728 0 0 0 0 0 0 0 0 0 {I|L} 0.23973 - 3 + NaN NaN 110857.1 NaN 20063 4637 24699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24704 97.737 NaN 336830 35 0 52694 0.327 + -1 FITSMKISL 9 66 528.2932843962553 1054.5720158593106 2 528.7797241210938 MULTI HCD FTMS 0 0 0 24703 22860.1953125 0.03209577166215733 25 -0.498992919921875 1 Oxidation (M) _FITSM(Oxidation (M))KISL_ REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF 15.847184025352803 0.2234401846867398 2 QEA{I|L} 4 -1 17 0 0 1.612 0 0 595.3364124982437 0 595.3364124982437 0 3.187587626244122 0 0 0 0 0 0 0 QEA{I|L} 1.612 - 172 NaN NaN 145306.5 NaN 20064 4638 24703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24705 97.742 NaN 71020 35 0 15491 0.261 + -1 YLLIRLRM 8 32 547.3327548467016 NaN 0 547.3329467773438 PEAK HCD FTMS 0 0 0 24703 12901.9033203125 0.465467685920207 7 -0.15007781982421875 2 Oxidation (M) _YLLIRLRM(Oxidation (M))_ REV__ENST00000261708.8_1_17:30214316-30221752:-|nuORF 0.7936320650641473 0.38822285293237185 2 T 1 -1 3.0989 0 0 0.28362 0 0 816.5040279045376 172.08081995181877 988.5848478563563 0 0 0 0 0 0 0 0 0 T 0.28362 - 2 + NaN NaN 96299.7 NaN 20065 4638 24703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24707 97.746 NaN 582140 35 0 96906 0.327 + 15025 LLPDQLVLL 9 46 512.3259407487682 1022.6373285643364 2 512.3261108398438 MULTI HCD FTMS 0 0 0 24706 408270.4375 0.5345404078653373 -5 0.084381103515625 1 Unmodified _LLPDQLVLL_ chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-2|AOPEP;nc|ENSG00000148120|Q8N6M6-4|AOPEP 25.399314129420986 0.14091189997036632 2 V{I|L}{I|L}{I|L} 4 6 46.938 0 0 4.5899 0 0 566.3066573389419 0 566.3066573389419 0 20.996075289514096 0 0 0 1.5 0 0 0 V{I|L}{I|L}{I|L} 4.5899 - 29 NaN NaN 179826.8 NaN 20066 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24708 97.751 NaN 169770 35 0 9159.1 0.261 + 12222 KKWDLFKKFFV 11 69 495.9587413998472 1484.8543947997416 3 495.9591064453125 MULTI HCD FTMS 0 0 0 24706 73307.140625 0.3048083854681269 -16 0.292327880859375 2 Unmodified _KKWDLFKKFFV_ tr|U7SFX9|U7SFX9_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02273PE=4SV=1 0.40826533853263924 0.41713015341995335 2 V 1 10 3.9794 0 0 0.268 0 0 1114.6343712752298 268.1229647272094 1382.7573360024392 0 0 0 0 0 0 0 0 0 + V 0.268 + + 7 + NaN NaN 115630.1 NaN 20067 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24709 97.754 NaN 373620 35 0 52807 0.261 + 22747 QYFLLDIAF 9 72 565.3016000970508 NaN 0 565.288818359375 PEAK HCD FTMS 0 0 0 24706 5476.10498046875 0.3597973635198257 -4 0.05844879150390625 3 Unmodified _QYFLLDIAF_ ENSG00000174607|ENST00000310836|UGT8 11.640296217721598 0.23883959125015683 2 YH 2 8 8.1876 0 0 0.72547 0 0 582.3447640595328 243.09641443424064 825.4411784937735 0 0 0 0 0 0.2614393726401688 0 0 0 YH 0.72547 - 61 + NaN NaN 147761 NaN 20068 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24710 97.758 NaN 387070 35 0 116030 0.261 + 31364 VYADIPFLL 9 46 525.7973367439782 1049.5801205547564 2 525.7971801757812 MULTI HCD FTMS 0 0 0 24706 172261.328125 0.8015527609364697 -4 0.05844879150390625 4 Unmodified _VYADIPFLL_ ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 34.10243960390752 0.09241788333544565 2 {I|L}P{M(Oxidation (M))|F}{I|L}{I|L} 5 4 42.735 0 0 4.0716 0 0 448.1956959455094 0 448.1956959455094 0 29.636153375280188 0 0 0 1.2302046884880937 0 0 0 + {I|L}P{M(Oxidation (M))|F}{I|L}{I|L} 4.0716 + + 56 NaN NaN 146041.7 NaN 20069 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24711 97.761 NaN 76517 35 0 7874.6 0.261 + 13616 KYPENFFLL 9 39 585.8130939134686 1169.6116348937371 2 585.813232421875 MULTI HCD FTMS 0 0 0 24706 46081.875 0.6510477948074941 -4 0.05844879150390625 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.005 0 0 2.5654 0 0 778.3648548810562 0 778.3648548810562 0 29.035984316004217 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.5654 + + 7 NaN NaN 103035 NaN 20070 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24712 97.764 NaN 44076 35 0 4188.4 0.262 -1 0 28 469.83035827666174 937.6461636201235 2 469.8306884765625 MULTI HCD FTMS 0 0 0 24706 14615.634765625 0.0879635846613202 40 -0.7788314819335938 6 NaN NaN 2 E 1 -1 6.5495 0 0 0.6985 0 0 468.85418471562974 336.72141443424067 805.5755991498704 0 0 0 0 0 0 0 0.3054621874040891 0 E 0.6985 - 1 + NaN NaN 102474.2 NaN 20071 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24713 97.768 NaN 360390 35 0 34315 0.261 + 11008 IYEPNFIFF 9 62 595.2999697839832 1188.5853866347663 2 595.2997436523438 MULTI HCD FTMS 0 0 0 24706 23705.880859375 0.5529759138099338 7 -0.1633758544921875 7 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 22.736283301280096 0.1639198954644489 2 PE[YE]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 5 37.885 0 0 3.1874 0 0 245.13720900703282 0 245.13720900703282 0 -1.7687909488601292 -1.7687909488601292 0 0 1.079689690656103 0 0.28872548999643577 0 PE[YE]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1874 - 272 NaN NaN 141884.8 NaN 20072 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24714 97.771 NaN 50698 35 0 8946.9 0.261 + -1 LAEPEVDVLCV 11 35 622.3168549756452 NaN 0 622.3160400390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _LAEPEVDVLC(Carbamidomethyl (C))V_ REV__ENSG00000161647|ENST00000398389|MPP3 8.745405648335112 0.31731194618894887 2 {I|L} 1 -1 16.237 0 0 1.3067 0 0 277.10720741047163 849.4016335326991 1126.5088409431708 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.3067 + + 2 + NaN NaN 104463.9 NaN 20073 4639 24706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24716 97.776 NaN 381190 35 0 48920 0.327 + 25675 SIACPSTAVIL 11 49 537.7968508304074 1073.5791487276147 2 537.7975463867188 MULTI HCD FTMS 0 0 0 24715 90902.9296875 0.12377856223374296 20 -0.38141632080078125 1 Unmodified _SIACPSTAVIL_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000485650.5_1_13:28015203-28024670:-|nuORF 47.748688679222035 0.09066307675719942 2 TAV{I|L}{I|L} 5 6 61.37 0 0 5.7164 0 0 558.2475453107437 0 558.2475453107437 0 54.38039076304328 0 0 0 1.6549471895720984 0 1.1861818737241734 0 + TAV{I|L}{I|L} 5.7164 + + 45 NaN NaN 162465 NaN 20074 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24717 97.781 NaN 578000 35 0 73785 0.261 + 19964 NYGKVSLLI 9 64 503.8013423706762 1005.5881318081524 2 503.78424072265625 MULTI HCD FTMS 0 0 0 24715 14037.4970703125 0.17418179229883274 1 -0.0262298583984375 2 Unmodified _NYGKVSLLI_ REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF;REV__ENST00000496903.5_1_10:94214203-94257457:-|nuORF 13.042465956692817 0.2476723265019929 2 {I|L}{I|L} 2 -1 20.261 0 0 2.0148 0 0 761.4098133540161 0 761.4098133540161 0 1.6773532018394377 0 0 0 0.3807196863200844 0 0 0 {I|L}{I|L} 2.0148 + + 55 NaN NaN 178751.7 NaN 20075 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24718 97.784 NaN 226370 35 0 25647 0.261 + 20677 PFLPASNLFF 10 52 576.8080800779595 1151.601607222719 2 576.80859375 MULTI HCD FTMS 0 0 0 24715 56521.140625 0.2849166442189698 11 -0.2254486083984375 3 Unmodified _PFLPASNLFF_ ENSG00000125247|ENST00000342624|TMTC4;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4 32.78568957990786 0.20801173326193015 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 8 26.964 0 0 2.3414 0 0 839.4548868631972 0 839.4548868631972 0 16.902281476392034 0 0 0 0.75 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3414 + + 38 NaN NaN 144832.7 NaN 20076 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24719 97.787 NaN 349130 35 0 35253 0.261 + 29052 TYFPTWEGLF 10 57 630.8005533384468 1259.5865537436935 2 630.80029296875 MULTI HCD FTMS 0 0 0 24715 76308.109375 0.24361481941735794 -4 0.06817626953125 4 Unmodified _TYFPTWEGLF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 110.6747026088012 5.03479218847684E-05 2 [YT]{M(Oxidation (M))|F}PTWEG{I|L}{M(Oxidation (M))|F} 10 0 + 114.39 0 0 9.0816 9.0816 96.333 0 0 0 24.25968732272281 97.19904731848281 24.25968732272281 19.987737688117235 0 3.0356668758921828 1.6989700043360187 1.066901560044258 0 + + [YT]{M(Oxidation (M))|F}PTWEG{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PT{[DA]|[EG]}W{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}PTWEVA{M(Oxidation (M))|F};[YT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}[KQ]G{I|L}{M(Oxidation (M))|F};[YT]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}[KQ]VA{M(Oxidation (M))|F} 9.0816;7.4947;5.243;2.0344;0.46338 +;-;-;-;- + 487 NaN NaN 144309.6 NaN 20077 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24720 97.791 NaN 98495 35 0 13724 0.262 + 1006 AYFNFPELL 9 39 557.2845747318522 NaN 0 557.2843017578125 PEAK HCD FTMS 0 0 0 24715 9199.474609375 0.16114229673319935 -10 0.1754608154296875 5 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 14.838274106304384 0.2220448417561729 2 {M(Oxidation (M))|F} 1 8 7.4743 0 0 0.67181 0 0 495.20970014554183 467.2506873732079 962.4603875187497 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.67181 + + 3 + NaN NaN 104328.9 NaN 20078 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24721 97.794 NaN 93817 35 0 13191 0.261 + 17389 LYQILQGIVF 10 52 597.3501796941125 1192.685806455025 2 597.3496704101562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 18.1463463914782 0.3413772152514074 2 Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 5 5 28.64 0 0 2.4013 0 0 630.3732166974625 0 630.3732166974625 0 23.15552802072581 0 0 0 0.9916440611282626 0 0 0 + Q{[VA]|[{I|L}G]}V{M(Oxidation (M))|F} 2.4013 + + 14 NaN NaN 100028.1 NaN 20079 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24722 97.797 NaN 145260 35 0 15187 0.261 + 11149 IYIPTAILW 9 54 545.3207594520673 1088.6269659709344 2 544.8057861328125 MULTI HCD FTMS 0 0 0 24715 12120.0888671875 0.07650412855731777 -10 0.1754608154296875 7 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 44.40701690623563 0.04511410083598184 2 Y{I|L}{I|L}W 4 5 40.037 0 0 3.6778 0 0 495.3048573224625 0 495.3048573224625 0 7.5898691026361575 0 0 0 1.3494850021680094 0 0 0 Y{I|L}{I|L}W 3.6778 - 85 NaN NaN 110724.9 NaN 20080 4640 24715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24724 97.802 NaN 802670 35 0 121650 0.327 + 32060 VYQIFDTFF 9 58 590.2895468147767 1178.5645406963533 2 590.2899169921875 MULTI HCD FTMS 0 0 0 24723 438668.65625 0.42947625388099464 6 -0.12421417236328125 1 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 118.89474601620944 0.0014903111061077812 2 [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 101.61 0 0 8.6214 8.6214 94.667 0 0 0 18.741436528314566 71.95554701812867 18.741436528314566 13.015384402724592 0 2.8494850021680094 1.3979400086720375 0.8494850021680094 0.3807196863200844 + + [YV]Q{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YV][AG]{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}AAT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 8.6214;7.5171;6.7358;4.8543;3.8758;3.0591;2.6863 +;-;-;-;-;-;- + 336 NaN NaN 217296 NaN 20081 4641 24723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24725 97.807 NaN 253480 35 0 61952 0.261 + 4490 EYIQFVPLL 9 48 561.3156651386481 NaN 0 561.3158569335938 PEAK HCD FTMS 0 0 0 24723 94330.6875 0.6878486860589836 -9 0.169158935546875 2 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 38.175570920033316 0.08412639609110066 2 {I|L}PV{M(Oxidation (M))|F} 4 7 30.918 0 0 2.759 0 0 131.09309604329752 530.2244967096311 661.3175927529287 0 0 0 0 0 1.5 0 0 0 {I|L}PV{M(Oxidation (M))|F} 2.759 - 49 + NaN NaN 127749.1 NaN 20082 4641 24723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24726 97.81 NaN 196520 35 0 30853 0.261 + 19957 NYGDYFNVFF 10 43 643.2798660275307 1284.5451791218613 2 643.2799072265625 MULTI HCD FTMS 0 0 0 24723 78341.890625 0.22682668808255782 -9 0.169158935546875 3 Unmodified _NYGDYFNVFF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 43.981846655682396 0.11085276043338313 2 Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 70.266 0 0 5.4701 0 0 449.15242201972814 0 449.15242201972814 0 63.27623146104628 0 0 0 2 0 0 0.8494850021680094 + Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.4701 + + 62 NaN NaN 112253.4 NaN 20083 4641 24723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24728 97.815 NaN 222580 35 0 30333 0.327 + 16129 LPTFTQILL 9 54 523.3172134453196 1044.619873957439 2 523.31689453125 MULTI HCD FTMS 0 0 0 24727 34669.51953125 0.35845440405450946 -1 0.012939453125 1 Unmodified _LPTFTQILL_ REV__ENST00000366691.3_1_1:228880485-228880638:+|nuORF 20.41453444215458 0.18397929046831515 2 {I|L}P 2 -1 39.464 0 0 3.7778 0 0 0 831.4577575971746 831.4577575971746 28.010299956639813 0 0 0 0 0 2 0 0 {I|L}P 3.7778 + + 25 + NaN NaN 127958.6 NaN 20084 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24729 97.82 NaN 154580 35 0 23932 0.261 + 17148 LYLPSFFTY 9 41 575.7938539970115 1149.573155060823 2 575.7942504882812 MULTI HCD FTMS 0 0 0 24727 55013.2578125 0.39326983705015944 -8 0.1528778076171875 2 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 54.773552608820026 0.024892918755467567 2 {M(Oxidation (M))|F}TY 3 6 33.188 0 0 2.8869 0 0 720.3832804626948 0 720.3832804626948 0 0.7403126772771884 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}TY 2.8869 + + 47 NaN NaN 121711.8 NaN 20085 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24730 97.823 NaN 176550 35 0 16800 0.261 + 17819 MGEKELNPLL 10 57 572.3068130454549 1142.5990731577097 2 572.3262329101562 MULTI HCD FTMS 0 0 0 24727 11217.419921875 0.44804856161620543 3 -0.0719757080078125 3 Unmodified _MGEKELNPLL_ REV__ENSG00000174125|ENST00000308979|TLR1 5.731851221503515 0.44496410492002586 2 M{I|L}{M(Oxidation (M))|F}Q 4 -1 31.938 0 0 2.7952 0 0 0 620.3080445281339 620.3080445281339 23.17741873407456 0 0 0 0 0 0 0 0 M{I|L}{M(Oxidation (M))|F}Q 2.7952 - 105 + NaN NaN 133084 NaN 20086 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24731 97.826 NaN 206690 35 0 23074 0.261 + 11150 IYIPTAILW 9 41 545.3207594520673 1088.6269659709344 2 545.3206176757812 MULTI HCD FTMS 0 0 0 24727 72511.4765625 0.14112331033103626 -8 0.1528778076171875 4 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 44.40701690623563 0.04511410083598184 2 H{I|L}{I|L}W 4 6 39.285 0 0 3.6086 0 0 521.296190330275 0 521.296190330275 0 9.847594070116017 0 0 0 1.4247425010840047 0 0 0 H{I|L}{I|L}W 3.6086 - 43 NaN NaN 119557.8 NaN 20087 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24732 97.83 NaN 52142 35 0 6176 0.261 + 5350 FFTTEKKQ 8 33 514.7748230343337 1027.5350931354674 2 514.7750854492188 MULTI HCD FTMS 0 0 0 24727 19550.94921875 0.2239471398012351 -8 0.1528778076171875 5 Unmodified _FFTTEKKQ_ REV__ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;REV__ENSG00000176208|ENST00000321990|ATAD5;REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF;REV__nc|ENSG00000176208|Q96QE3-2|ATAD5 8.593279151180031 0.5292430274356741 2 {M(Oxidation (M))|F} 1 -1 21.237 0 0 2.0668 0 0 862.4566457251143 0 862.4566457251143 0 0.26802492411967194 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F} 2.0668 + + 5 + NaN NaN 119695.4 NaN 20088 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24733 97.833 NaN 136220 35 0 38310 0.261 + -1 FCSDKSRSSS 10 43 580.7529878311313 1159.4914227290626 2 580.7525634765625 MULTI HCD FTMS 0 0 0 24727 22970.013671875 0.5549077426981509 7 -0.15705108642578125 6 Carbamidomethyl (C) _FC(Carbamidomethyl (C))SDKSRSSS_ REV__ENSG00000104044|ENST00000354638|OCA2;REV__nc|ENSG00000104044|Q04671-2|OCA2;REV__nc|ENSG00000104044|Q04671-3|OCA2 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118439.9 NaN 20089 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24734 97.836 NaN 109860 35 0 12068 0.261 -1 TYNMVLNLL 9 47 548.7881584668881 1095.5617640005762 2 548.78857421875 MULTI HCD FTMS 0 0 0 24727 6412.01025390625 0.05660446269378923 22 -0.4404144287109375 7 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ ENSG00000039123|ENST00000230640|MTREX 10.823927491677226 0.26684000660059787 2 [YT]{M(Oxidation (M))|F} 3 -1 37.007 0 0 3.3779 0 0 0 681.3613985650999 681.3613985650999 25.31234684152075 0 0 0 0 0.805462187404089 2 0 0 [YT]{M(Oxidation (M))|F} 3.3779 - 13 + NaN NaN 121265.1 NaN 20090 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24735 97.84 NaN 100770 35 0 9088.5 0.261 + -1 LLCRLCKV 8 46 531.3025647837682 NaN 0 531.3019409179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Carbamidomethyl (C) _LLC(Carbamidomethyl (C))RLC(Carbamidomethyl (C))KV_ REV__ENSG00000106025|ENST00000222747|TSPAN12 5.230669730166228 0.38822285293237185 2 {I|L}{I|L} 2 -1 10.969 0 0 1.0342 0 0 132.0985690086123 699.3027242190151 831.4012932276273 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.0342 + + 5 + NaN NaN 122775.8 NaN 20091 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24736 97.843 NaN 75965 35 0 22136 0.261 + 33087 YDRHRSSDFSS 11 31 452.87024316069096 NaN 0 452.8808898925781 PEAK HCD FTMS 0 0 0 24727 13153.5810546875 0.472928712316731 -17 0.31516265869140625 9 Unmodified _YDRHRSSDFSS_ REV__ENSG00000100731|ENST00000304743|PCNX1;REV__ENST00000554879.5_1_14:71374480-71476401:+|nuORF;REV__nc|ENSG00000100731|Q96RV3-2|PCNX1;REV__nc|ENSG00000100731|Q96RV3-3|PCNX1;REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 1.1097533296519684 0.33897209286470975 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108466 NaN 20092 4642 24727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24738 97.848 NaN 488860 35 0 68659 0.327 + 907 AYAPQGWIAFF 11 57 635.8162733321534 1269.6179937311067 2 635.8162231445312 MULTI HCD FTMS 0 0 0 24737 154826 0.27024356345669964 -7 0.14019012451171875 1 Unmodified _AYAPQGWIAFF_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 71.92227651296345 0.013463123628000074 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 0 + 83.721 0 0 6.5942 6.5942 94.826 0 0 0 21.09122312673766 79.11677642163181 21.09122312673766 83.72087019139369 0 2.7302046884880937 1.5228787452803376 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.5942 + + 256 NaN NaN 157447.4 NaN 20093 4643 24737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24739 97.852 NaN 36868 35 0 5014 0.264 + 32419 WAGLCGRF 8 26 455.22532053855707 NaN 0 455.2255554199219 PEAK HCD FTMS 0 0 0 24737 31647.455078125 0.8366657802677269 31 -0.597198486328125 2 Unmodified _WAGLCGRF_ REV__ENST00000369774.8_3_10:105360643-105360724:-|nuORF 0.7936320650641473 0.38822285293237185 2 {I|L} 1 -1 0.3786 0 0 0.041676 0 0 471.19763707145165 321.13092981510005 792.3285668865517 0 0 0 0 0 0 0 0 0 {I|L} 0.041676 + + 1 + NaN NaN 96771.4 NaN 20094 4643 24737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24740 97.856 NaN 120440 35 0 12750 0.261 + 6514 FPISDHVLT 9 43 514.7748230343337 1027.5350931354674 2 515.2761840820312 MULTI HCD FTMS 0 0 0 24737 34554.94140625 0.6341891693674113 -7 0.14019012451171875 3 Unmodified _FPISDHVLT_ ENSG00000182732|ENST00000553525|RGS6;ENSG00000182901|ENST00000440928|RGS7;ENST00000553690.5_1_14:72924992-72931412:+|nuORF;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-2|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-5|RGS7 21.74664581756881 0.17247014374749275 2 D{I|L}PE 4 8 39.157 0 0 3.8107 0 0 555.3043080060562 0 555.3043080060562 0 13.187587626244124 0 0 0 0.7742275032520141 0 0.4247425010840047 0 D{I|L}PE 3.8107 - 40 NaN NaN 107349.4 NaN 20095 4643 24737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24741 97.859 NaN 132940 35 0 28318 0.261 + 1007 AYFNFPELL 9 50 557.2845747318522 NaN 0 557.2849731445312 PEAK HCD FTMS 0 0 0 24737 17339.833984375 0.3037326360319618 -7 0.14019012451171875 4 Unmodified _AYFNFPELL_ DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60 10.073929032068715 0.24642998803896465 2 {M(Oxidation (M))|F} 1 8 8.8515 0 0 0.7956 0 0 495.21262983304183 467.250340290043 962.4629701230849 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 0.7956 + + 10 + NaN NaN 123696.2 NaN 20096 4643 24737 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24743 97.864 NaN 900860 35 0 163180 0.327 + 22882 QYPFPLPVF 9 60 554.2972430662492 1106.5799331992982 2 554.2974243164062 MULTI HCD FTMS 0 0 0 24742 546045.25 0.5155735634652926 5 -0.107940673828125 1 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 109.62928328672726 0.0030029239606406397 2 [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F} 9 0 + 92.828 0 0 8.3887 8.3887 97.469 0 0 0 11.35029351276792 77.34305011473481 11.35029351276792 60.697216027710105 0 2.9802046884880937 0 0 1.1421590589602533 + + [YQ]P{M(Oxidation (M))|F}P{I|L}PV{M(Oxidation (M))|F};[Y{I|L}]VVPQ{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F};[Y{I|L}]VVP{M(Oxidation (M))|F}P{[WS]|[C(Carbamidomethyl (C)){I|L}]} 8.3887;2.9036;2.2679 +;-;- + 250 NaN NaN 227903.1 NaN 20097 4644 24742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24744 97.869 NaN 134550 35 0 16739 0.261 + -1 FLHRCPLI 8 51 528.2932843962553 1054.5720158593106 2 528.7796020507812 MULTI HCD FTMS 0 0 0 24742 17127.341796875 0.02404683092062814 31 -0.5900039672851562 2 Carbamidomethyl (C) _FLHRC(Carbamidomethyl (C))PLI_ REV__ENSG00000170153|ENST00000515673|RNF150;REV__nc|ENSG00000170153|Q9ULK6-2|RNF150;REV__nc|ENSG00000170153|Q9ULK6-3|RNF150;REV__nc|ENSG00000170153|Q9ULK6-4|RNF150 10.183394434864962 0.5188676124868831 2 V{I|L} 2 -1 13.812 0 0 1.3098 0 0 824.4037342755875 0 824.4037342755875 0 4.348331157524969 0 0 0 0 0 0 0 V{I|L} 1.3098 - 14 NaN NaN 133749.8 NaN 20098 4644 24742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24745 97.872 NaN 69477 35 0 11064 0.261 + 32770 WRNRQKNKRR 10 36 481.28353142384896 1440.828764871747 3 481.617919921875 MULTI HCD FTMS 0 0 0 24742 19563.693359375 0.08278607439356123 50 -0.9231948852539062 3 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 103191.9 NaN 20099 4644 24742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24746 97.876 NaN 63581 35 0 6828.8 0.261 -1 LKHLDMVLPE 10 33 605.8276153595931 1209.640677785986 2 605.8280029296875 MULTI HCD FTMS 0 0 0 24742 26058.552734375 0.6428695812060912 1 -0.02286529541015625 4 Oxidation (M) _LKHLDM(Oxidation (M))VLPE_ ENSG00000176095|ENST00000321599|IP6K1;nc|ENSG00000176095|Q92551-2|IP6K1 4.189502756095605 0.45312800054222196 2 {I|L}{I|L}PE 4 -1 31.938 0 0 2.6403 0 0 739.3507907502964 0 739.3507907502964 0 27.33410649039925 0 0 0 0 0 0 0 {I|L}{I|L}PE 2.6403 - 25 NaN NaN 103960.2 NaN 20100 4644 24742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24747 97.879 NaN 47082 35 0 4390.1 0.261 + 31443 VYCCLGLFHF 10 29 601.2806252725334 1200.5466976118666 2 601.7825927734375 MULTI HCD FTMS 0 0 0 24742 18399.384765625 0.27781036425846384 9 -0.16635894775390625 5 Unmodified _VYCCLGLFHF_ REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF 7.910154910731844 0.4334339971971892 2 [YV]Q{I|L}{M(Oxidation (M))|F} 5 -1 41.51 0 0 3.4576 0 0 0 547.1803682916624 547.1803682916624 37.53083433768431 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 [YV]Q{I|L}{M(Oxidation (M))|F} 3.4576 - 37 + NaN NaN 99461 NaN 20101 4644 24742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24748 97.882 NaN 65722 35 0 7144.2 0.261 + 33152 YELGVLFLL 9 31 533.8125100328041 1065.610467132408 2 533.812744140625 MULTI HCD FTMS 0 0 0 24742 38451.4609375 1 0 0 6 Unmodified _YELGVLFLL_ TDP1|p.P545L|1|0.33|ENSG00000042088|chr14:90019408-90019408|C/T|missense_variant 15.847184025352803 0.2234401846867398 2 {I|L}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 40.433 0 0 3.7944 0 0 561.2799256884458 0 561.2799256884458 0 25.828956512079344 0 0 0 0.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L}{I|L} 3.7944 + + 23 NaN NaN 103971.8 NaN 20102 4644 24742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24750 97.887 NaN 493120 35 0 82382 0.327 + 20547 PEAVVAVLIL 10 39 512.3259407487682 1022.6373285643364 2 512.326171875 MULTI HCD FTMS 0 0 0 24749 505708.96875 0.6621147494099033 1 -0.0229034423828125 1 Unmodified _PEAVVAVLIL_ REV__ENSG00000171561|ENST00000641541|OR2AT4 19.256988751693697 0.33098864134661865 2 V{I|L}{I|L}{I|L} 4 -1 46.938 0 0 4.5899 0 0 566.3062638219217 0 566.3062638219217 0 39.94850021680094 0 0 0 1.5 0 0 0 V{I|L}{I|L}{I|L} 4.5899 + + 25 NaN NaN 163945.9 NaN 20103 4645 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24751 97.892 NaN 246960 35 0 14370 0.261 + 22494 QRQRHVRLHQK 11 69 495.9587413998472 1484.8543947997416 3 495.9591369628906 MULTI HCD FTMS 0 0 0 24749 166606.28125 0.6927427691722379 -10 0.19892120361328125 2 Unmodified _QRQRHVRLHQK_ REV__ENSG00000168813|ENST00000355898|ZNF507;REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 0.4545168274142398 0.41692731010159206 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.2087 0 0 896.5187147233729 438.2644442193969 1334.78315894277 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.2087 - 7 + NaN NaN 126762.2 NaN 20104 4645 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24752 97.895 NaN 173080 35 0 31993 0.261 + 6840 FPSWAMELL 9 45 547.2728317241568 1092.5311105151136 2 547.2732543945312 MULTI HCD FTMS 0 0 0 24749 106569.3828125 0.3759300636658729 -5 0.11114501953125 3 Unmodified _FPSWAMELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 19.256988751693697 0.19398022840297344 2 ME{I|L}{I|L} 4 5 41.983 0 0 3.8427 0 0 588.2672596662125 0 588.2672596662125 0 36.49797211252192 0 0 0 1.305462187404089 0 0 0 + ME{I|L}{I|L} 3.8427 + + 43 NaN NaN 130191.9 NaN 20105 4645 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24753 97.898 NaN 141700 35 0 12355 0.261 -1 CIVNATIEIP 10 57 565.3016000970508 NaN 0 565.2891235351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))IVNATIEIP_ DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant;ENSG00000276023|ENST00000617516|DUSP14 6.723162845929126 0.3344301934401713 2 V{I|L}G 3 -1 8.6721 0 0 0.76841 0 0 131.06191358224504 725.3274019830686 856.3893155653136 0 0 0 0 0 0 0 0 0 V{I|L}G 0.76841 - 9 + NaN NaN 108239.6 NaN 20106 4645 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24754 97.902 NaN 733140 35 0 218420 0.261 + 968 AYFDFPELL 9 60 557.7761525804725 1113.537752227745 2 557.775634765625 MULTI HCD FTMS 0 0 0 24749 117898.0703125 0.02639905712231461 -10 0.19892120361328125 5 Unmodified _AYFDFPELL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 85.27202061508552 0.004649858145912257 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 81.768 0 0 7.343 7.343 94.632 0 0 0 4.137342758552691 76.28296453349711 4.137342758552691 31.052659518797938 0 2.6307196863200843 0 0.9876954943324545 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[WY]E{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[WE]Y{I|L}{I|L} 7.343;4.5544;1.223;0.6423 +;-;-;- + 236 NaN NaN 212247.9 NaN 20107 4645 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24755 97.905 NaN 60486 35 0 6242.5 0.261 + 28836 TVFLFGLLS 9 31 498.79070658797986 995.5668602427597 2 498.7922668457031 MULTI HCD FTMS 0 0 0 24749 10512.65234375 0.5165749496451334 1 -0.0229034423828125 6 Unmodified _TVFLFGLLS_ ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9 6.723162845929126 0.3000504726104499 2 E 1 9 8.9794 0 0 0.90194 0 0 331.2066681471967 532.2794283502561 863.4860964974528 0 0 0 0 0 0.5 0 0 0 E 0.90194 - 7 + NaN NaN 92472.1 NaN 20108 4645 24749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24757 97.91 NaN 398110 35 0 56079 0.327 + 6467 FPILFVEPNL 10 66 594.8367914123752 1187.6590298915503 2 594.8369750976562 MULTI HCD FTMS 0 0 0 24756 301946.875 0.9252341692867415 3 -0.06217193603515625 1 Unmodified _FPILFVEPNL_ ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant 89.40071534611396 0.0010484101455745577 2 {I|L}{M(Oxidation (M))|F}VEPN{I|L} 7 3 59.359 0 0 4.998 0 0 357.20604024486903 0 357.20604024486903 0 49.70577288841724 0 0 0 2.4489700043360187 0 0.7302046884880937 1.0356668758921828 + {I|L}{M(Oxidation (M))|F}VEPN{I|L} 4.998 + + 294 + NaN NaN 147821 NaN 20109 4646 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24758 97.915 NaN 402360 35 0 112750 0.261 + 24014 RWFKSTLI 8 46 525.8076254496434 NaN 0 525.7974243164062 PEAK HCD FTMS 0 0 0 24756 3583.693359375 0.18750289324619004 4 -0.07509613037109375 2 Unmodified _RWFKSTLI_ REV__ENST00000280904.10_2_18:28671106-28672218:-|nuORF 9.347437153973935 0.38822285293237185 2 {I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 4 -1 14.781 0 0 1.4083 0 0 131.11775753808098 411.2226656549438 542.3404231930248 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}P{M(Oxidation (M))|F} 1.4083 - 31 + NaN NaN 161149.8 NaN 20110 4646 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24759 97.918 NaN 91354 35 0 11008 0.261 + 13617 KYPENFFLL 9 40 585.8130939134686 1169.6116348937371 2 585.8139038085938 MULTI HCD FTMS 0 0 0 24756 38668.26171875 0.5463077733063428 3 -0.06217193603515625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.1930734562688509 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 4 5 37.251 0 0 3.1849 0 0 631.2985096662125 0 631.2985096662125 0 37.250547101681875 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 3.1849 + + 26 NaN NaN 105365.3 NaN 20111 4646 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24760 97.921 NaN 54887 35 0 6469.9 0.261 + 32628 WLTKKYLIRWL 11 38 507.3096702543274 1518.9071813631822 3 507.30908203125 MULTI HCD FTMS 0 0 0 24756 17284.685546875 0.39075986273843843 -7 0.1633758544921875 4 Unmodified _WLTKKYLIRWL_ REV__ENSG00000197603|ENST00000651892|CPLANE1;REV__nc|ENSG00000197603|Q9H799-5|CPLANE1;REV__nc|ENSG00000197603|Q9H799|CPLANE1 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 94861.2 NaN 20112 4646 24756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24762 97.927 NaN 1007300 35 0 304270 0.327 + 969 AYFDFPELL 9 68 557.7761525804725 1113.537752227745 2 557.7763061523438 MULTI HCD FTMS 0 0 0 24761 185971.84375 0.041641744544973235 -8 0.17977142333984375 1 Unmodified _AYFDFPELL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 133.70201269244603 0.0003804610509361063 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 97.145 0 0 8.724 8.724 98.287 0 0 0 13.469100130080562 13.469100130080562 13.469100130080562 84.19637752350454 0 2.6747425010840047 1.3010299956639813 1.055462187404089 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}[WY]E{I|L}{I|L} 8.724;1.1628 +;- + 149 NaN NaN 257136 NaN 20113 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24763 97.931 NaN 759190 35 0 131760 0.261 + 32394 VYWLLSLL 8 77 503.8013423706762 1005.5881318081524 2 503.7842102050781 MULTI HCD FTMS 0 0 0 24761 14876.953125 0.1845980338431183 8 -0.126708984375 2 Unmodified _VYWLLSLL_ ENSG00000110108|ENST00000227525|TMEM109 19.438996006549623 0.45076845602799126 2 {I|L}{I|L}A[HQ]{I|L}{M(Oxidation (M))|F} 7 7 25.706 0 0 2.5563 0 0 165.1143279486559 0 165.1143279486559 0 0.48918221526150774 0 0 0 0 0 0 0 {I|L}{I|L}A[HQ]{I|L}{M(Oxidation (M))|F} 2.5563 - 184 + NaN NaN 221457.2 NaN 20114 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24764 97.934 NaN 688350 35 0 81704 0.261 + 29053 TYFPTWEGLF 10 80 630.8005533384468 1259.5865537436935 2 630.8006591796875 MULTI HCD FTMS 0 0 0 24761 95483.4140625 0.30483227621164943 3 -0.0587005615234375 3 Unmodified _TYFPTWEGLF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 114.6490535036381 4.5448240269034285E-05 2 [YT]{M(Oxidation (M))|F}PTWEG{I|L}{M(Oxidation (M))|F} 10 0 + 90.39 0 0 7.1762 7.1762 93.921 0 0 0 11.876531584792502 11.876531584792502 11.876531584792502 25.371381606472596 0 2.416386562212267 1.5228787452803376 0.9674165578762486 0 + + [YT]{M(Oxidation (M))|F}PTWEG{I|L}{M(Oxidation (M))|F};[YT]EAWTP{M(Oxidation (M))|F}[{M(Oxidation (M))|F}V];[YT]{M(Oxidation (M))|F}PTWEVA{M(Oxidation (M))|F};[YT]KK[C(Carbamidomethyl (C))D]EG{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[KA]{[QG]|[NA]}EG{I|L}{M(Oxidation (M))|F};[YT]{[TV]|[{I|L}S]}{[QG]|[NA]}Q{M(Oxidation (M))|F}G{I|L}{M(Oxidation (M))|F};[YT]EQ{[MS]|[{M(Oxidation (M))|F}A]}[KG]G{I|L}{M(Oxidation (M))|F};[YT]Q{[MS]|[{M(Oxidation (M))|F}A]}[KG]EG{I|L}{M(Oxidation (M))|F};[YT]QE{[MS]|[{M(Oxidation (M))|F}A]}[KG]G{I|L}{M(Oxidation (M))|F};[YT]EQ{[MS]|[{M(Oxidation (M))|F}A]}{[QN]|[E{I|L}]|[KN]}{I|L}{M(Oxidation (M))|F} 7.1762;5.1619;4.403;4.3844;4.002;3.63;3.4314;3.2239;3.1743;2.7514 +;-;-;-;-;-;-;-;-;- + 1871 NaN NaN 211256.4 NaN 20115 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24765 97.938 NaN 203850 35 0 29114 0.261 + 32061 VYQIFDTFF 9 50 590.2895468147767 1178.5645406963533 2 590.2901000976562 MULTI HCD FTMS 0 0 0 24761 52795.55859375 0.05168921554649667 12 -0.21136474609375 4 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 57.72198328787511 0.020768266150574023 2 [{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 4 + 70.138 0 0 5.9511 5.9511 91.552 0 0 0 2.7545373444029053 47.6072158606037 2.7545373444029053 22.003187623076954 0 2.3494850021680094 0 0.4247425010840047 0 [{M(Oxidation (M))|F}T]AA{I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]D{M(Oxidation (M))|F}GVVT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9511;4.0842 -;- 126 NaN NaN 120882 NaN 20116 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24766 97.941 NaN 403640 35 0 49009 0.261 + 25676 SIACPSTAVIL 11 49 537.7968508304074 1073.5791487276147 2 537.7975463867188 MULTI HCD FTMS 0 0 0 24761 61106.3203125 0.0832058163326268 27 -0.518768310546875 5 Unmodified _SIACPSTAVIL_ ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000485650.5_1_13:28015203-28024670:-|nuORF 53.832793166522166 0.0656792923142766 2 TAV{I|L}{I|L} 5 6 64.073 0 0 5.9682 0 0 558.2462025373062 0 558.2462025373062 0 53.10378004088497 0 0 0 1.6382104921644451 0 1.274227503252014 0 + TAV{I|L}{I|L} 5.9682 + + 44 NaN NaN 149120.5 NaN 20117 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24767 97.944 NaN 125280 35 0 33031 0.261 + 10766 ISFFISQIF 9 33 551.3049006231582 1100.5952483131164 2 551.302734375 MULTI HCD FTMS 0 0 0 24761 24890.181640625 0.41914203543918244 -3 0.062164306640625 6 Unmodified _ISFFISQIF_ REV__nc|ENSG00000079739|P36871-2|PGM1 14.838274106304384 0.23215694253501695 2 {I|L}[RH][RP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 8 -1 + 22.893 0 0 2.08 2.08 87.544 0 0 0 11.923487412610356 5.484550065040278 5.484550065040278 22.89258754269092 0 0.5 0 0 0.4247425010840047 {I|L}[RH][RP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.08 - 41 + NaN NaN 108584 NaN 20118 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24768 97.948 NaN 206010 35 0 15653 0.261 + 35288 YVVWYTLW 8 65 565.2893903010677 1128.5642276689352 2 566.2977905273438 MULTI HCD FTMS 0 0 0 24761 27421.27734375 0.6038438336351615 3 -0.0587005615234375 7 Unmodified _YVVWYTLW_ REV__ENSG00000115255|ENST00000233596|REEP6;REV__ENSG00000129625|ENST00000379638|REEP5;REV__ENST00000497856.6_1_5:112228472-112256990:-|nuORF;REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF;REV__nc|ENSG00000115255|Q96HR9|REEP6;REV__nc|ENSG00000129625|Q00765-2|REEP5;REV__REEP5|p.D83N|1|0.23|ENSG00000129625|chr5:112902484-112902484|C/T|missense_variant 9.347437153973935 0.5250182646323369 2 YV 2 -1 20.969 0 0 1.858 0 0 0 863.4083337086591 863.4083337086591 1.327862308715595 0 0 0 0 0 0 0 0 YV 1.858 + + 126 + NaN NaN 134345.8 NaN 20119 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24769 97.951 NaN 95582 35 0 17031 0.261 -1 DYCRSCKK 8 37 530.2400421430192 NaN 0 530.2395629882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _DYC(Carbamidomethyl (C))RSCKK_ ENST00000506579.5_1_5:140057288-140057606:-|nuORF 2.302733041254933 0.38822285293237185 2 {I|L} 1 -1 5.4846 0 0 0.51816 0 0 243.0636281319383 699.3001192682249 942.3637474001632 0 0 0 0 0 0 0 0 0 {I|L} 0.51816 - 7 + NaN NaN 121358.2 NaN 20120 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24770 97.954 NaN 53143 35 0 7297.6 0.261 + -1 YNIKHFFMK 9 38 622.3168549756452 NaN 0 622.3160400390625 PEAK HCD FTMS 0 0 0 24761 5709.46728515625 0.22258882564591176 17 -0.32913970947265625 9 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 852.4297782112529 274.08335291080317 1126.5131311220562 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 3 + NaN NaN 116189.8 NaN 20121 4647 24761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24772 97.959 NaN 586650 35 0 100790 0.327 + 19958 NYGDYFNVFF 10 66 643.2798660275307 1284.5451791218613 2 643.2798461914062 MULTI HCD FTMS 0 0 0 24771 132784.953125 0.38445805818898615 -2 0.049224853515625 1 Unmodified _NYGDYFNVFF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 93.16586880292088 0.0007594237434582029 2 Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 4 76.943 0 0 5.9899 0 0 449.1532154767594 0 449.1532154767594 0 62.58478465655138 0 0 0 2.3807196863200843 0 0 1.1989700043360187 + Y{M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9899 + + 623 NaN NaN 183897.3 NaN 20122 4648 24771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24773 97.964 NaN 230020 35 0 50637 0.261 + 7329 FVAEFSVPLL 10 50 561.3156651386481 NaN 0 561.3155517578125 PEAK HCD FTMS 0 0 0 24771 76294.375 0.5563299387322007 -2 0.049224853515625 2 Unmodified _FVAEFSVPLL_ ENSG00000169777|ENST00000382492|TAS2R1 32.30548876998284 0.18095516228401948 2 V{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{I|L} 5 6 31.287 0 0 2.7919 0 0 341.23175441761424 201.06679712467033 542.2985515422846 0 0 0 0 0 2.1549471895720984 0 0.6549471895720984 0 V{M(Oxidation (M))|F}{[ES]|[DT]|[{I|L}C]}{I|L} 2.7919 - 79 + NaN NaN 137141.3 NaN 20123 4648 24771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24774 97.967 NaN 51265 35 0 8855.2 0.261 -1 WLNKLMKLLQR 11 32 486.9591505525804 NaN 0 486.9587707519531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _WLNKLM(Oxidation (M))KLLQR_ ENSG00000068878|ENST00000404125|PSME4 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99516.7 NaN 20124 4648 24771 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24776 97.972 NaN 715050 35 0 107820 0.327 + 908 AYAPQGWIAFF 11 58 635.8162733321534 1269.6179937311067 2 635.8165893554688 MULTI HCD FTMS 0 0 0 24775 452029.59375 0.7890024169253502 -1 0.01294708251953125 1 Unmodified _AYAPQGWIAFF_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 71.92227651296345 0.013463123628000074 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 0 + 83.919 0 0 6.6098 6.6098 92.459 0 0 0 19.929155219028935 16.575773191777927 16.575773191777927 19.929155219028935 0 2.4247425010840047 1.5228787452803376 0 0.3252574989159953 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{M(Oxidation (M))|F}GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}S[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]SA{I|L}WG{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP]S{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}W{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[RN]G{[DA]|[EG]}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP][WQ]{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F};[QP][WQ]{I|L}S{M(Oxidation (M))|F}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.6098;5.0401;4.9361;4.1359;3.7174;3.4633;2.3973;1.9075 +;-;-;-;-;-;-;- + 382 NaN NaN 200801.5 NaN 20125 4649 24775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24777 97.977 NaN 699680 35 0 83395 0.262 + 11151 IYIPTAILW 9 64 545.3207594520673 1088.6269659709344 2 545.321044921875 MULTI HCD FTMS 0 0 0 24775 334706.5625 0.6514127187688502 -1 0.01294708251953125 2 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 109.62928328672726 0.0030029239606406397 2 [Y{I|L}]{I|L}PTA{I|L}{I|L}W 9 0 + 86.756 0 0 7.9693 7.9693 95.19 0 0 0 4.890690719683093 4.890690719683093 4.890690719683093 23.66750554106318 0 3.024227503252014 1.3979400086720375 0.7742275032520141 0 + + [Y{I|L}]{I|L}PTA{I|L}{I|L}W;{I|L}{I|L}YPTA{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{I|L}W;{[CT]|[{M(Oxidation (M))|F}G]}{I|L}[VG][KG]{I|L}{I|L}[VS] 7.9693;5.7952;4.0056;2.066 +;-;-;- + 569 NaN NaN 196969.8 NaN 20126 4649 24775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24778 97.98 NaN 132880 35 0 15874 0.261 + 17149 LYLPSFFTY 9 42 575.7938539970115 1149.573155060823 2 575.7942504882812 MULTI HCD FTMS 0 0 0 24775 51324.35546875 0.366899211471776 -1 0.01294708251953125 3 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F}TY 3 6 32.747 0 0 2.8487 0 0 720.3839448439848 0 720.3839448439848 0 0.30008452963798504 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}TY 2.8487 + + 46 NaN NaN 124766.3 NaN 20127 4649 24775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24780 97.985 NaN 269050 35 0 44892 0.327 -1 0 49 554.3098215063235 553.3025450397234 1 554.2976684570312 MULTI HCD FTMS 0 0 0 24779 8758.6435546875 1 0 0 1 NaN NaN 2 TPV{M(Oxidation (M))|F} 4 -1 22.907 0 0 4.1401 0 0 91.0602487524172 0 91.0602487524172 0 12.44972548463494 0 0 0 0 0 0 0 TPV{M(Oxidation (M))|F} 4.1401 - 27 + NaN NaN 123975.1 NaN 20128 4650 24779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24781 97.99 NaN 412390 35 0 90403 0.261 + 11078 IYGYLQELIF 10 55 629.8393143547008 1257.6640757762016 2 629.840087890625 MULTI HCD FTMS 0 0 0 24779 386878.625 1 0 0 2 Unmodified _IYGYLQELIF_ ENSG00000124786|ENST00000644923|SLC35B3;nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3 40.23920728925047 0.14333095755487663 2 {I|L}QE{I|L}{I|L}{M(Oxidation (M))|F} 6 4 63.053 0 0 5.0135 0 0 496.2311268537125 0 496.2311268537125 0 48.359790849763655 0 0 0 2.3494850021680094 0 0 0.3807196863200844 + {I|L}QE{I|L}{I|L}{M(Oxidation (M))|F} 5.0135 + + 203 NaN NaN 170548 NaN 20129 4650 24779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24782 97.993 NaN 230100 35 0 63090 0.261 -1 YLCHSCAEQ 9 41 584.2318285471005 1166.4491041610008 2 584.2320556640625 MULTI HCD FTMS 0 0 0 24779 158815.328125 0.6641709730173259 -9 0.18291473388671875 3 2 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))HSC(Carbamidomethyl (C))AEQ_ ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 2.302733041254933 0.33356062215410776 2 V 1 -1 5.4846 0 0 0.47019 0 0 131.8497597287763 932.5067376770726 1064.3564974058488 0 0 0 0 0 0 0 0 0 V 0.47019 - 5 + NaN NaN 151023.7 NaN 20130 4650 24779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24783 97.997 NaN 86766 35 0 10631 0.261 + 18041 MLRFMALF 8 38 514.7748230343337 1027.5350931354674 2 514.7745361328125 MULTI HCD FTMS 0 0 0 24779 87301.625 1 0 0 4 Unmodified _MLRFMALF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 19.438996006549623 0.45076845602799126 2 {I|L}PE 3 -1 31.198 0 0 3.0362 0 0 670.3271351544937 0 670.3271351544937 0 5.981362441963327 0 0 0 0.5 0 0 0 {I|L}PE 3.0362 - 16 NaN NaN 118358.8 NaN 20131 4650 24779 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24785 98.001 NaN 369690 35 0 74073 0.327 -1 0 50 568.767428221059 1135.520303508918 2 568.767578125 MULTI HCD FTMS 0 0 0 24784 306115.75 0.5749811992606021 -4 0.07500457763671875 1 NaN NaN 2 AY{M(Oxidation (M))|F}D{M(Oxidation (M))|F}R 6 -1 75.182 0 0 6.621 0 0 0 333.1238192193969 333.1238192193969 36.726759565325295 0 0 0 0 1.7302046884880937 2 0 0 AY{M(Oxidation (M))|F}D{M(Oxidation (M))|F}R 6.621 - 109 + NaN NaN 168514.6 NaN 20132 4651 24784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24786 98.006 NaN 68694 35 0 11942 0.261 + 30099 VFVNVGNLLEF 11 35 625.842401283244 1249.670249633288 2 625.84228515625 MULTI HCD FTMS 0 0 0 24784 21942.0859375 0.40525681967589694 1 -0.0162200927734375 2 Unmodified _VFVNVGNLLEF_ ENSG00000237172|ENST00000449549|B3GNT9 11.517880264261096 0.3567267433909682 2 E{M(Oxidation (M))|F} 2 9 24.222 0 0 1.9382 0 0 955.5513783185562 0 955.5513783185562 0 8.252574989159953 0 0 0 0.3252574989159953 0 0 0 + E{M(Oxidation (M))|F} 1.9382 + + 9 NaN NaN 104205.2 NaN 20133 4651 24784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24787 98.009 NaN 194650 35 0 24338 0.261 + 28969 TYAPLFSLPSF 11 41 621.8239976617849 1241.6334423903697 2 621.8250732421875 MULTI HCD FTMS 0 0 0 24784 51881.09375 0.048522817425291236 -8 0.15343475341796875 3 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 45.739877483867886 0.09998344372470726 2 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 8 3 61.604 0 0 4.9615 0 0 0 346.14220960397034 346.14220960397034 54.156687756324686 0 0 0 0 2.3494850021680094 2 0.3494850021680094 0 + [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 4.9615 + + 232 NaN NaN 112612.3 NaN 20134 4651 24784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24788 98.013 NaN 119980 35 0 16632 0.261 -1 MVHKQYYCA 9 44 579.7582795856473 1157.5020062380945 2 579.758544921875 MULTI HCD FTMS 0 0 0 24784 30268.861328125 0.7343961763166066 -8 0.15343475341796875 4 Oxidation (M) _M(Oxidation (M))VHKQYYCA_ ENSG00000169946|ENST00000407775|ZFPM2;nc|ENSG00000169946|Q8WW38-2|ZFPM2 2.0597508629832335 0.3354026079994024 2 R 1 -1 4.6041 0 0 0.39776 0 0 266.1623588765695 732.2246798150999 998.3870386916694 0 0 0 0 0 0 0 0 0 R 0.39776 - 2 + NaN NaN 102931.7 NaN 20135 4651 24784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24790 98.018 NaN 230830 35 0 35420 0.327 + 20548 PEAVVAVLIL 10 42 512.3259407487682 1022.6373285643364 2 512.3263549804688 MULTI HCD FTMS 0 0 0 24789 41702.48828125 0.05460024299422567 8 -0.13974761962890625 1 Unmodified _PEAVVAVLIL_ REV__ENSG00000171561|ENST00000641541|OR2AT4 19.256988751693697 0.33098864134661865 2 V{I|L}{I|L}{I|L} 4 -1 45.745 0 0 4.4733 0 0 566.3066273419937 0 566.3066273419937 0 31.765997036641593 0 0 0 1.3807196863200843 0 0 0 V{I|L}{I|L}{I|L} 4.4733 + + 26 NaN NaN 139182.4 NaN 20136 4652 24789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24791 98.022 NaN 337290 35 0 16145 0.261 + -1 VRKYKEKKLMF 11 77 495.9587413998472 1484.8543947997416 3 496.29339599609375 MULTI HCD FTMS 0 0 0 24789 128406.6875 0.7720212486428847 -3 0.04544830322265625 2 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 0.4545168274142398 0.41692731010159206 2 N{[HG]|PP}N 4 -1 17.096 0 0 1.1513 0 0 1044.5875721662126 0 1044.5875721662126 0 9.621440527729419 0 0 0 0.805462187404089 0 0 0 N{[HG]|PP}N 1.1513 - 33 NaN NaN 158352.7 NaN 20137 4652 24789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24792 98.026 NaN 92394 35 0 19371 0.261 -1 0 42 453.2096203246 452.202343858 1 453.20928955078125 MULTI HCD FTMS 0 0 0 24789 26392.875 0.5453275802788391 -3 0.04544830322265625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 115778.3 NaN 20138 4652 24789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24794 98.031 NaN 261060 35 0 59662 0.327 + 6841 FPSWAMELL 9 46 547.2728317241568 1092.5311105151136 2 547.273193359375 MULTI HCD FTMS 0 0 0 24793 100007.734375 0.35278344453603855 3 -0.04517364501953125 1 Unmodified _FPSWAMELL_ ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF 37.97399986684836 0.07464525285885698 2 ME{I|L}{I|L} 4 5 50.433 0 0 4.6162 0 0 588.2706165998062 0 588.2706165998062 0 36.938200260161125 0 0 0 1.5 0 0.3494850021680094 0 + ME{I|L}{I|L} 4.6162 + + 41 NaN NaN 124978.5 NaN 20139 4653 24793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24795 98.035 NaN 54779 35 0 8220.3 0.261 + 32771 WRNRQKNKRR 10 35 481.28353142384896 1440.828764871747 3 481.2842712402344 MULTI HCD FTMS 0 0 0 24793 21828.744140625 0.05136024410019147 62 -1.0650100708007812 2 Unmodified _WRNRQKNKRR_ ENSG00000132275|ENST00000254605|RRP8 0.15932191953741626 0.4744603884079788 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103376.1 NaN 20140 4653 24793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24796 98.039 NaN 111310 35 0 8097.6 0.261 + 2789 DYGIVADLF 9 40 506.75291217916237 1011.4912714251248 2 507.2547912597656 MULTI HCD FTMS 0 0 0 24793 32658.640625 0.2821414752232787 -6 0.10419464111328125 3 Unmodified _DYGIVADLF_ ENSG00000140374|ENST00000557943|ETFA;ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA 34.40172386719151 0.0910440009062557 2 VAD{I|L}{M(Oxidation (M))|F} 5 4 54.508 0 0 5.3889 0 0 448.1961180795183 0 448.1961180795183 0 49.90417829939986 0 0 0 1.805462187404089 0 0 0 + VAD{I|L}{M(Oxidation (M))|F} 5.3889 + + 60 NaN NaN 105411.5 NaN 20141 4653 24793 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24798 98.044 NaN 194950 35 0 21445 0.327 + 6468 FPILFVEPNL 10 47 594.8367914123752 1187.6590298915503 2 594.8366088867188 MULTI HCD FTMS 0 0 0 24797 65048.2578125 0.19932271456923747 11 -0.22161865234375 1 Unmodified _FPILFVEPNL_ ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant 32.78568957990786 0.20801173326193015 2 {M(Oxidation (M))|F}VE[NP]{I|L} 6 4 35.891 0 0 3.022 0 0 470.2873707501969 0 470.2873707501969 0 32.668840438552316 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}VE[NP]{I|L} 3.022 + + 28 NaN NaN 119249.8 NaN 20142 4654 24797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24799 98.048 NaN 261170 35 0 32451 0.261 + 32924 YAFYDEMIT 9 69 576.7498083866785 1151.485063840157 2 576.7501831054688 MULTI HCD FTMS 0 0 0 24797 39360.984375 0.4833656299451089 1 -0.00962066650390625 2 Unmodified _YAFYDEMIT_ REV__ENSG00000127616|ENST00000344626|SMARCA4;REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF;REV__ENST00000591595.5_1_19:11130023-11172489:+|nuORF;REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF;REV__nc|ENSG00000127616|P51532-2|SMARCA4;REV__nc|ENSG00000127616|P51532-3|SMARCA4;REV__nc|ENSG00000127616|P51532-4|SMARCA4;REV__nc|ENSG00000127616|P51532-5|SMARCA4 12.531546534597751 0.2520865569484384 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DPE 6 -1 42.382 0 0 3.6807 0 0 0 426.1659101510581 426.1659101510581 21.170912423450403 0 0 0 0 0.75 2 0.2742275032520141 0 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DPE 3.6807 - 42 + NaN NaN 135358.5 NaN 20143 4654 24797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24801 98.053 NaN 3989500 35 0 1205900 0.327 + 970 AYFDFPELL 9 73 557.7761525804725 1113.537752227745 2 557.7767333984375 MULTI HCD FTMS 0 0 0 24800 4465995.5 1 0 0 1 Unmodified _AYFDFPELL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 162.95088124538222 7.661836540310252E-09 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 105.23 0 0 9.4502 9.4502 95.841 0 0 0 19.621892823592972 65.90025358891396 19.621892823592972 14.58674701179433 0 2.7302046884880937 1.3979400086720375 1.5356668758921828 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}DPE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}YA{M(Oxidation (M))|F}PE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}S{M(Oxidation (M))|F}PE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}AYPE{I|L}{I|L};{[{M(Oxidation (M))|F}D]|MM}{[ES]|[DT]|[{I|L}C]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};[EP]{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}[HM]{I|L};[EP]{I|L}{I|L}{[{M(Oxidation (M))|F}D]|MM}{M(Oxidation (M))|F}AY 9.4502;8.1403;6.5534;6.3952;5.2434;2.0104;1.9863;1.937 +;-;-;-;-;-;-;- + 677 NaN NaN 693073.6 NaN 20144 4655 24800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24802 98.057 NaN 495300 35 0 76032 0.261 + 736 ARIHHFII 8 50 503.8013423706762 1005.5881318081524 2 503.7841796875 MULTI HCD FTMS 0 0 0 24800 35512.4296875 0.4406496842615066 16 -0.32326507568359375 2 Unmodified _ARIHHFII_ ANO3|p.L330Hfs*14|1|0.16|ENSG00000134343|chr11:26537418-26537419|TT/-|frameshift_variant;ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3 14.581692164780916 0.48650662947107914 2 {I|L}Q[HA]{I|L}{I|L}{M(Oxidation (M))|F} 7 5 22.184 0 0 2.2061 0 0 165.11444709318317 0 165.11444709318317 0 -2.280067976692166 -2.280067976692166 0 0 0 0 0 0 {I|L}Q[HA]{I|L}{I|L}{M(Oxidation (M))|F} 2.2061 - 69 + NaN NaN 161751.5 NaN 20145 4655 24800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24803 98.061 NaN 251570 35 0 16762 0.261 + 29054 TYFPTWEGLF 10 69 630.8005533384468 1259.5865537436935 2 630.8010864257812 MULTI HCD FTMS 0 0 0 24800 97415.609375 0.31100083963156777 11 -0.22796630859375 3 Unmodified _TYFPTWEGLF_ ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF 57.72198328787511 0.049706386133502735 2 [YT]{M(Oxidation (M))|F}[TP]WEG{I|L}{M(Oxidation (M))|F} 10 0 + 68.95 0 0 5.474 5.474 90.46 0 0 0 10.862905438089086 10.862905438089086 10.862905438089086 19.235162698957282 0 2.579689690656103 1.3979400086720375 0 0 + + [YT]{M(Oxidation (M))|F}[TP]WEG{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[TP]{[DA]|[EG]}W{I|L}{M(Oxidation (M))|F};[YT]KK[DG]CEG{I|L}{M(Oxidation (M))|F};[YT]KK[C(Carbamidomethyl (C))D]EG{I|L}{M(Oxidation (M))|F};[YT]QQ{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}EG{I|L}{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[TP]W[{I|L}A]D{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[TP]WEVA{M(Oxidation (M))|F};[YT]{M(Oxidation (M))|F}[TP]K{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F};[YT]VV{M(Oxidation (M))|F}K{[QN]|[E{I|L}]|[KN]}D{M(Oxidation (M))|F} 5.474;3.9469;3.8614;3.8173;3.5783;3.5105;2.9955;2.6356;1.6837 +;-;-;-;-;-;-;-;- + 673 NaN NaN 129865.1 NaN 20146 4655 24800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24804 98.064 NaN 109750 35 0 17216 0.261 -1 KKEFWFCL 8 46 579.2933891141571 NaN 0 579.294189453125 PEAK HCD FTMS 0 0 0 24800 34367.58984375 0.5294043422441668 23 -0.452850341796875 4 Carbamidomethyl (C) _KKEFWFC(Carbamidomethyl (C))L_ ENST00000412139.6_1_7:86792572-86792851:+|nuORF 5.230669730166228 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107852.6 NaN 20147 4655 24800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24805 98.068 NaN 85920 35 0 27238 0.263 -1 0 30 453.269214607051 452.26193814045104 1 453.2691650390625 MULTI HCD FTMS 0 0 0 24800 22777.591796875 0.10182283592246782 -9 0.14310455322265625 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 100723.3 NaN 20148 4655 24800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24806 98.071 NaN 262770 35 0 31142 0.261 + 17670 MAEELNLYL 9 69 548.2759458185426 NaN 0 548.2898559570312 PEAK HCD FTMS 0 0 0 24800 13874.8134765625 1 0 0 6 Unmodified _MAEELNLYL_ REV__ENSG00000189157|ENST00000424749|FAM47E;REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E 12.531546534597751 0.23452071659215576 2 {I|L}{I|L}N 3 -1 11.669 0 0 1.0661 0 0 460.16400762648885 291.13486658267817 751.298874209167 0 0 0 0 0 0 0 0 0.3252574989159953 {I|L}{I|L}N 1.0661 - 49 + NaN NaN 139185.5 NaN 20149 4655 24800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24808 98.076 NaN 234940 35 0 52286 0.327 + 11577 IYSTSLTFTYT 11 52 432.88545882623606 NaN 0 432.88525390625 PEAK HCD FTMS 0 0 0 24807 128507.1328125 0.3859474361635951 -17 0.32913970947265625 1 Unmodified _IYSTSLTFTYT_ ENSG00000168214|ENST00000355476|RBPJ;ENST00000505727.1_1_4:26431998-26432626:+|nuORF;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;nc|ENSG00000168214|Q06330|RBPJ 1.1097533296519684 0.33897209286470975 2 C 1 11 0.48455 0 0 0.056098 0 0 625.6743162347003 132.0448397272094 757.7191559619097 0 0 0 0 0 0 0 0 0 C 0.056098 - 1 + NaN NaN 124183.8 NaN 20150 4656 24807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24809 98.08 NaN 176260 35 0 17442 0.261 + 6469 FPILFVEPNL 10 48 594.8367914123752 1187.6590298915503 2 594.8370971679688 MULTI HCD FTMS 0 0 0 24807 42671.9921875 0.13075672746542544 13 -0.2650909423828125 2 Unmodified _FPILFVEPNL_ ENSG00000156463|ENST00000359120|SH3RF2;SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant 26.268140514670165 0.2654086933305545 2 VE[NP]{I|L} 5 5 29.693 0 0 2.5001 0 0 617.3565615845908 0 617.3565615845908 0 22.703037561203843 0 0 0 1.3494850021680094 0 0 0 + VE[NP]{I|L} 2.5001 + + 13 NaN NaN 111902.5 NaN 20151 4656 24807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24810 98.084 NaN 88124 35 0 13545 0.261 + 18042 MLRFMALF 8 37 514.7748230343337 1027.5350931354674 2 514.7761840820312 MULTI HCD FTMS 0 0 0 24807 29519.2734375 0.338129713364442 6 -0.1473388671875 3 Unmodified _MLRFMALF_ REV__ENSG00000168356|ENST00000302328|SCN11A;REV__nc|ENSG00000168356|Q9UI33-2|SCN11A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A;REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant 26.34127834903884 0.3999841173197873 2 D{I|L}PE 4 -1 40.433 0 0 3.935 0 0 555.3019886701187 0 555.3019886701187 0 10.656753288559813 0 0 0 0.4247425010840047 0 0.4247425010840047 0 D{I|L}PE 3.935 - 20 NaN NaN 114345.4 NaN 20152 4656 24807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24811 98.087 NaN 54347 35 0 12549 0.261 + 31623 VYIPCIYVL 9 35 541.802734375 NaN 0 541.802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VYIPCIYVL_ ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF 5.230669730166228 0.26989974671959066 2 M 1 9 11.99 0 0 1.1085 0 0 557.3301181623061 390.20343958072505 947.5335577430312 0 0 0 0 0 0.5 0 0 0 M 1.1085 - 1 + NaN NaN 113533 NaN 20153 4656 24807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24813 98.092 NaN 178880 35 0 43591 0.326 + 4491 EYIQFVPLL 9 45 561.3156651386481 NaN 0 561.3156127929688 PEAK HCD FTMS 0 0 0 24812 42586.76171875 0.310537841587863 7 -0.163482666015625 1 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 27.628801355627647 0.1361920736132224 2 Q{M(Oxidation (M))|F}V 3 6 26.682 0 0 2.381 0 0 405.1882017599149 338.2080265596575 743.3962283195724 0 0 0 0 0 1.5 0 0 0 + Q{M(Oxidation (M))|F}V 2.381 + + 39 + NaN NaN 116787.2 NaN 20154 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24814 98.097 NaN 181970 35 0 27370 0.261 + 19959 NYGDYFNVFF 10 46 643.2798660275307 1284.5451791218613 2 643.2799072265625 MULTI HCD FTMS 0 0 0 24812 77118.1484375 0.2232835340273894 7 -0.163482666015625 2 Unmodified _NYGDYFNVFF_ ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion 33.4449034751529 0.20229115034201947 2 {M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 5 61.498 0 0 4.7875 0 0 612.2162953107437 0 612.2162953107437 0 54.508272069161734 0 0 0 1.805462187404089 0 0 0.8494850021680094 + {M(Oxidation (M))|F}NV{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.7875 + + 80 NaN NaN 109119.2 NaN 20155 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24815 98.1 NaN 91951 35 0 10258 0.261 + 32062 VYQIFDTFF 9 41 590.2895468147767 1178.5645406963533 2 590.2898559570312 MULTI HCD FTMS 0 0 0 24812 46999.61328125 0.046014725598226947 22 -0.43340301513671875 3 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 34.93206674587334 0.08860942999206235 2 {I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 63.136 0 0 5.357 0 0 390.1886158673844 0 390.1886158673844 0 61.146387799684874 0 0 0 2.3494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}DT{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.357 + + 44 NaN NaN 109270.4 NaN 20156 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24816 98.103 NaN 122000 35 0 22787 0.261 + 7655 FYITGIFQI 9 44 551.3049006231582 1100.5952483131164 2 551.3028564453125 MULTI HCD FTMS 0 0 0 24812 5780.37548828125 0.09733952056848566 7 -0.163482666015625 4 Unmodified _FYITGIFQI_ ENSG00000109099|ENST00000312280|PMP22;ENST00000494511.5_1_17:15134236-15168564:-|nuORF 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}E[RP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 7 6 20.986 0 0 1.9068 0 0 130.1184549554976 0 130.1184549554976 0 16.38190082242268 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}E[RP]Y{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.9068 - 31 + NaN NaN 117302.5 NaN 20157 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24817 98.107 NaN 148170 35 0 20730 0.261 -1 SICCCLFIL 9 45 564.7659981495067 NaN 0 564.765380859375 PEAK HCD FTMS 0 0 0 24812 21368.068359375 0.5033181282931705 -2 0.03894805908203125 5 2 Carbamidomethyl (C) _SIC(Carbamidomethyl (C))C(Carbamidomethyl (C))CLFIL_ ENSG00000113719|ENST00000393784|ERGIC1 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 6.9897 0 0 0.61992 0 0 131.09693197382916 880.3133638971311 1011.4102958709602 0 0 0 0 0 0 0 0 0 {I|L} 0.61992 + + 2 + NaN NaN 128362.1 NaN 20158 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24818 98.11 NaN 114810 35 0 20943 0.261 + -1 IDKLYLIF 8 52 533.8128265813252 NaN 0 533.8130493164062 PEAK HCD FTMS 0 0 0 24812 6859.01904296875 0.3213131768387419 2 -0.04570770263671875 6 Acetyl (Protein N-term) _(Acetyl (Protein N-term))IDKLYLIF_ REV__tr|U7SPY0|U7SPY0_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01685PE=4SV=1 9.347437153973935 0.38822285293237185 2 Y 1 -1 8.0989 0 0 0.76003 0 0 511.30074974292535 388.22422205142817 899.5249717943535 0 0 0 0 0 0.5 0 0 0 Y 0.76003 + + 1 + NaN NaN 126047.2 NaN 20159 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24819 98.113 NaN 110500 35 0 12000 0.261 + 13618 KYPENFFLL 9 33 585.8130939134686 1169.6116348937371 2 586.5227661132812 MULTI HCD FTMS 0 0 0 24812 18158.537109375 0.3672961958421903 -7 0.10695648193359375 7 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 19.922 0 0 1.7033 0 0 778.3633900373062 0 778.3633900373062 0 7.949127674554756 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 1.7033 + + 26 NaN NaN 109153.3 NaN 20160 4657 24812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24821 98.118 NaN 394920 35 0 86390 0.327 + 909 AYAPQGWIAFF 11 51 635.8162733321534 1269.6179937311067 2 635.8165283203125 MULTI HCD FTMS 0 0 0 24820 108377.5859375 0.18916942259429745 8 -0.16287994384765625 1 Unmodified _AYAPQGWIAFF_ ENSG00000077254|ENST00000370794|USP33;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|4|fusion;FUBP1-USP33|5|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;nc|ENSG00000077254|Q8TEY7|USP33 71.92227651296345 0.013463123628000074 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 11 0 + 78.907 0 0 6.215 6.215 94.087 0 0 0 19.84183576065466 78.90656099462998 19.84183576065466 78.90656099462998 0 2.6747425010840047 1.3979400086720375 0 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}A[QP]GW{I|L}A{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.215 + + 200 NaN NaN 149243.2 NaN 20161 4658 24820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24822 98.123 NaN 161930 35 0 17730 0.262 + 11152 IYIPTAILW 9 45 545.3207594520673 1088.6269659709344 2 545.3209838867188 MULTI HCD FTMS 0 0 0 24820 94442.2265625 0.18380538198040813 8 -0.16287994384765625 2 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 53.57557251787612 0.02656881086235134 2 AA{I|L}{I|L}W 5 5 39.196 0 0 3.6005 0 0 516.3104509336282 0 516.3104509336282 0 6.748650278674049 0 0 0 1.4247425010840047 0 0 0 AA{I|L}{I|L}W 3.6005 - 85 + NaN NaN 123983 NaN 20162 4658 24820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24823 98.126 NaN 150000 35 0 20866 0.261 + 17150 LYLPSFFTY 9 47 575.7938539970115 1149.573155060823 2 575.7938232421875 MULTI HCD FTMS 0 0 0 24820 44967.546875 0.32145669126430915 8 -0.16287994384765625 3 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 39.957323273324995 0.06554068735427583 2 {M(Oxidation (M))|F}TY 3 6 33.94 0 0 2.9524 0 0 720.3836327053737 0 720.3836327053737 0 2.998037644757048 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}TY 2.9524 + + 48 NaN NaN 138667.2 NaN 20163 4658 24820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24824 98.13 NaN 100050 35 0 29443 0.261 + -1 ENMCYHVP 8 38 533.2084518240214 NaN 0 533.2088012695312 PEAK HCD FTMS 0 0 0 24820 18355.859375 0.4101467751314074 -1 0.0261383056640625 4 Carbamidomethyl (C),Oxidation (M) _ENM(Oxidation (M))C(Carbamidomethyl (C))YHVP_ REV__ENSG00000137942|ENST00000271234|FNBP1L;REV__nc|ENSG00000137942|Q5T0N5-2|FNBP1L;REV__nc|ENSG00000137942|Q5T0N5-5|FNBP1L 0.7936320650641473 0.38822285293237185 2 {I|L}{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.80641 0 0 129.8886921228489 671.3435762994749 801.2322684223238 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.80641 - 3 + NaN NaN 110006.6 NaN 20164 4658 24820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24825 98.133 NaN 215640 35 0 31550 0.261 + 1880 CWVPGQHGVF 10 70 565.2676809950954 1128.5208090569906 2 565.7698364257812 MULTI HCD FTMS 0 0 0 24820 7837.71875 0.34483149159947835 1 -0.01956939697265625 5 Unmodified _CWVPGQHGVF_ REV__ENSG00000131653|ENST00000326181|TRAF7;REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 7.289230182591677 0.43672065049472153 2 DD{I|L}[Y{M(Oxidation (M))|F}]NPV{M(Oxidation (M))|F} 9 -1 + 28.082 0 0 2.4884 2.4884 85.147 0 0 0 11.840380319756534 14.973024840566469 11.840380319756534 9.208187539523752 0 0 0 0 0 DD{I|L}[Y{M(Oxidation (M))|F}]NPV{M(Oxidation (M))|F};DD{I|L}[Y{M(Oxidation (M))|F}]GGPV{M(Oxidation (M))|F};[DN][PG]Q[KQ]PV{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))E]|[WC]}[RH]ANPV{M(Oxidation (M))|F};[DN]KK{M(Oxidation (M))|F}[EC]V{M(Oxidation (M))|F};[NS]AA[Y{M(Oxidation (M))|F}]NPV{M(Oxidation (M))|F};[DN][PG][QA]ANPV{M(Oxidation (M))|F};[NS][Y{M(Oxidation (M))|F}][KQ]PV{M(Oxidation (M))|F};DD{I|L}[Y{M(Oxidation (M))|F}]{[SA]|[TG]}W{I|L};{[C(Carbamidomethyl (C))E]|[WC]}[RH]AGGPV{M(Oxidation (M))|F} 2.4884;1.6725;1.2497;1.1093;0.93759;0.87221;0.60933;0.56013;0.36846;0.29339 -;-;-;-;-;-;-;-;-;- 436 + NaN NaN 134419.3 NaN 20165 4658 24820 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24827 98.138 NaN 1488000 35 0 215850 0.327 + 28970 TYAPLFSLPSF 11 69 621.8239976617849 1241.6334423903697 2 621.8240966796875 MULTI HCD FTMS 0 0 0 24826 1069210.25 1 0 0 1 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 187.2963844392146 3.5761863653778077E-14 2 [YT]AP{I|L}{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F} 11 0 + 111.04 0 0 8.9432 8.9432 91.835 0 0 0 2.2049999164467806 2.2049999164467806 2.2049999164467806 7.684465535402296 0 3.473197507588033 1.6989700043360187 2.591129063296272 0 + + [YT]AP{I|L}{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]AP{I|L}{M(Oxidation (M))|F}S{I|L}SP{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]VVS{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]APV{M(Oxidation (M))|F}T{I|L}PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}P{I|L}T{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]A[{I|L}T]{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}TP{I|L}{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YV]S[VP]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YV]S{I|L}S{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F} 8.9432;8.3243;7.2945;7.1671;6.806;6.7315;6.5574;6.5277;6.2143;6.1789 +;-;-;-;-;-;-;-;-;- + 2451 + NaN NaN 318232.7 NaN 20166 4659 24826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24828 98.142 NaN 237320 35 0 74548 0.261 + -1 SDCAYCHAAL 10 39 584.2318285471005 1166.4491041610008 2 584.2322998046875 MULTI HCD FTMS 0 0 0 24826 239118.140625 1 0 0 2 2 Carbamidomethyl (C) _SDC(Carbamidomethyl (C))AYC(Carbamidomethyl (C))HAAL_ REV__ENSG00000100330|ENST00000401950|MTMR3;REV__ENST00000491251.1_1_22:30418516-30421787:+|nuORF;REV__nc|ENSG00000100330|Q13615-2|MTMR3;REV__nc|ENSG00000100330|Q13615-3|MTMR3 1.4819007175156935 0.4674597685733628 2 G 1 -1 6.9897 0 0 0.59923 0 0 100.0523240233559 1006.3519410351514 1106.4042650585072 0 0 0 0 0 0 0 0 0 G 0.59923 - 2 + NaN NaN 132058.7 NaN 20167 4659 24826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24829 98.146 NaN 157970 35 0 16307 0.261 + 11079 IYGYLQELIF 10 54 629.8393143547008 1257.6640757762016 2 629.83935546875 MULTI HCD FTMS 0 0 0 24826 79203.1640625 0.20472354620909852 9 -0.17694091796875 3 Unmodified _IYGYLQELIF_ ENSG00000124786|ENST00000644923|SLC35B3;nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3 18.373094154950223 0.33925629317698053 2 {[{M(Oxidation (M))|F}C]|[YS]}V{I|L}{M(Oxidation (M))|F}QE{I|L}{I|L}{M(Oxidation (M))|F} 10 4 + 48.05 0 0 3.8206 3.8206 83.363 0 0 0 7.269987279362624 42.56540282307676 7.269987279362624 6.396514561379568 0 0.9456290139465235 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}V{I|L}{M(Oxidation (M))|F}QE{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}{M(Oxidation (M))|F}S[VP]S{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}S{M(Oxidation (M))|F}[VP]S{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}{M(Oxidation (M))|F}[AG]E{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}V{I|L}SV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{M(Oxidation (M))|F};VV[YT]{M(Oxidation (M))|F}QE{I|L}{I|L}{M(Oxidation (M))|F};VV[YT]{M(Oxidation (M))|F}S[VP]S{I|L}{M(Oxidation (M))|F};VV[YT]S{M(Oxidation (M))|F}[VP]S{I|L}{M(Oxidation (M))|F};VV[YT]{M(Oxidation (M))|F}[AG]E{I|L}{I|L}{M(Oxidation (M))|F};VV[YT]SV{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}S{I|L}{M(Oxidation (M))|F} 3.8206;3.312;3.2614;3.0919;3.0556;2.3297;1.8211;1.7705;1.601;1.5647 -;-;-;-;-;-;-;-;-;- 418 NaN NaN 114414.6 NaN 20168 4659 24826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24830 98.149 NaN 169330 35 0 14597 0.262 + 27428 SYVASFFLL 9 59 523.7813889724617 1045.5482250117234 2 523.78173828125 MULTI HCD FTMS 0 0 0 24826 51600.75 0.7740329592056527 4 -0.0982513427734375 4 Unmodified _SYVASFFLL_ CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant;ENSG00000134256|ENST00000682167|CD101 61.357469665136826 0.01568246967499496 2 AS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 6 3 55.768 0 0 5.3338 0 0 349.1627369611344 0 349.1627369611344 0 53.293578219013824 0 0 0 1.6989700043360187 0 1.066901560044258 0 + AS{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 5.3338 + + 115 NaN NaN 122767.1 NaN 20169 4659 24826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24831 98.152 NaN 129000 35 0 13306 0.261 -1 LSDNPIHESM 10 53 579.7582795856473 1157.5020062380945 2 579.7598876953125 MULTI HCD FTMS 0 0 0 24826 41215.984375 1 0 0 5 Oxidation (M) _LSDNPIHESM(Oxidation (M))_ ENSG00000175643|ENST00000312499|RMI2;nc|ENSG00000175643|Q96E14-2|RMI2 2.735195868890462 0.4608258780945842 2 D 1 -1 9.732 0 0 0.84077 0 0 151.1050111433005 888.3227022760374 1039.4277134193378 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.84077 + + 1 + NaN NaN 111578.8 NaN 20170 4659 24826 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24833 98.157 NaN 567720 35 0 108940 0.327 -1 0 65 568.767428221059 1135.520303508918 2 568.7676391601562 MULTI HCD FTMS 0 0 0 24832 244312.234375 0.4588948510979092 5 -0.10773468017578125 1 NaN NaN 2 AY{M(Oxidation (M))|F}D{M(Oxidation (M))|F}RE 7 -1 77.472 0 0 6.8226 0 0 0 204.08291040592033 204.08291040592033 43.26351685329996 0 0 0 0 1.6989700043360187 2 0.3807196863200844 0 AY{M(Oxidation (M))|F}D{M(Oxidation (M))|F}RE 6.8226 - 152 + NaN NaN 175729.1 NaN 20171 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24834 98.162 NaN 257720 35 0 12565 0.261 + -1 VRKYKEKKLMF 11 66 495.9587413998472 1484.8543947997416 3 495.958984375 MULTI HCD FTMS 0 0 0 24832 137697.140625 0.5725396292864052 5 -0.10773468017578125 2 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 0.3666738066901352 0.4173125597497531 2 K 1 -1 6.9897 0 0 0.47073 0 0 938.5281750145442 415.19907556705317 1353.7272505815974 0 0 0 0 0 0.5 0 0 0 K 0.47073 + + 21 + NaN NaN 125544.6 NaN 20172 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24835 98.165 NaN 193380 35 0 43063 0.261 + 22883 QYPFPLPVF 9 37 554.2972430662492 1106.5799331992982 2 554.2987670898438 MULTI HCD FTMS 0 0 0 24832 95971.1328125 0.09061552853713403 21 -0.4170684814453125 3 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 28.486842064014134 0.11819662193267319 2 P{I|L}[VP]{M(Oxidation (M))|F} 5 4 38.966 0 0 3.5213 0 0 535.2437000959 0 535.2437000959 0 38.96591250700361 0 0 0 1.6747425010840047 0 0 0 + P{I|L}[VP]{M(Oxidation (M))|F} 3.5213 + + 30 NaN NaN 122232.1 NaN 20173 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24836 98.169 NaN 318590 35 0 24042 0.261 + 4246 EVGFFVTLHES 11 66 632.8146861218006 1263.6148193104011 2 632.8152465820312 MULTI HCD FTMS 0 0 0 24832 97420.578125 0.5856320519232892 -4 0.08160400390625 4 Unmodified _EVGFFVTLHES_ REV__ENSG00000232030|ENST00000416929|MAGEB6B 8.155526934196011 0.3831532958467648 2 [YT]AP{I|L}{M(Oxidation (M))|F}S{I|L} 8 -1 52.389 0 0 4.1459 0 0 0 368.1228121393188 368.1228121393188 43.436172372683046 0 0 0 0 1.5044321917401078 2 0 0 [YT]AP{I|L}{M(Oxidation (M))|F}S{I|L} 4.1459 - 186 + NaN NaN 141063 NaN 20174 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24837 98.172 NaN 239440 35 0 45593 0.261 + 10125 IFLLTNNNLLL 11 59 644.3865883786551 1286.7586238241101 2 644.3875732421875 MULTI HCD FTMS 0 0 0 24832 55965.73828125 0.8030929149133097 1 -0.03955078125 5 Unmodified _IFLLTNNNLLL_ ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B 33.4449034751529 0.1791669456720762 2 T{I|L}E{I|L}{I|L} 5 8 58.513 0 0 4.5474 0 0 699.3907948224625 0 699.3907948224625 0 47.30204688488094 0 0 0 1.6747425010840047 0 0.3807196863200844 0 T{I|L}E{I|L}{I|L} 4.5474 - 40 NaN NaN 129455.5 NaN 20175 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24838 98.175 NaN 227480 35 0 51439 0.263 + 29970 VFIELPLSI 9 43 515.8129720413833 NaN 0 515.8128051757812 PEAK HCD FTMS 0 0 0 24832 66682.1328125 0.7292968878834521 -4 0.08160400390625 6 Unmodified _VFIELPLSI_ ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;nc|ENSG00000135424|Q13683|ITGA7 43.85829265575387 0.06590164363483184 2 S{I|L}P{I|L}E 5 6 42.206 0 0 4.0992 0 0 131.09889423138492 356.19602380924067 487.2949180406256 0 0 0 0 0 1.4247425010840047 0 0 0 S{I|L}P{I|L}E 4.0992 - 27 + NaN NaN 144496.5 NaN 20176 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24839 98.179 NaN 88484 35 0 11507 0.261 + -1 VINCVNEPLI 10 32 585.8130939134686 1169.6116348937371 2 585.813720703125 MULTI HCD FTMS 0 0 0 24832 20059.060546875 0.28339574149170305 17 -0.3357391357421875 7 Carbamidomethyl (C) _VINC(Carbamidomethyl (C))VNEPLI_ REV__GPR37L1|p.T372I|1|0.33|ENSG00000170075|chr1:202128225-202128225|C/T|missense_variant 8.155526934196011 0.43213520406898465 2 {I|L}{I|L} 2 -1 25.969 0 0 2.2203 0 0 925.4326223449295 0 925.4326223449295 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2203 + + 5 NaN NaN 102203.4 NaN 20177 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24840 98.182 NaN 66385 35 0 5076.3 0.261 -1 YIAVEMAGIL 10 39 548.2898868458714 NaN 0 548.3079223632812 PEAK HCD FTMS 0 0 0 24832 12683.138671875 0.3108548729566088 5 -0.10773468017578125 8 Oxidation (M) _YIAVEM(Oxidation (M))AGIL_ ENSG00000104687|ENST00000221130|GSR;nc|ENSG00000104687|P00390-2|GSR;nc|ENSG00000104687|P00390-3|GSR;nc|ENSG00000104687|P00390-4|GSR;nc|ENSG00000104687|P00390-5|GSR 6.723162845929126 0.3344301934401713 2 YN{I|L} 3 -1 9.9215 0 0 0.90644 0 0 131.07524380717388 570.2924898736936 701.3677336808676 0 0 0 0 0 0 0 0 0 YN{I|L} 0.90644 - 14 + NaN NaN 93809.8 NaN 20178 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24841 98.185 NaN 67001 35 0 5889.3 0.261 -1 0 36 512.3259407487682 1022.6373285643364 2 512.3261108398438 MULTI HCD FTMS 0 0 0 24832 24832.060546875 0.03251212567371673 16 -0.3095703125 9 NaN NaN 2 {I|L}{I|L}{I|L} 3 -1 35.445 0 0 3.4661 0 0 665.3731754887501 0 665.3731754887501 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L} 3.4661 - 6 NaN NaN 101434.1 NaN 20179 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24842 98.189 NaN 95377 35 0 22659 0.261 + -1 NCEFPDHF 8 41 533.2084518240214 NaN 0 533.2074584960938 PEAK HCD FTMS 0 0 0 24832 26728.671875 0.5972304727942926 1 -0.03955078125 10 Carbamidomethyl (C) _NC(Carbamidomethyl (C))EFPDHF_ REV__IKZF1|p.R487H|1|0.43|ENSG00000185811|chr7:50400527-50400527|G/A|missense_variant 4.75600775471527 0.38822285293237185 2 H 1 -1 0.48455 0 0 0.045523 0 0 531.238545638474 393.0826815240844 924.3212271625584 0 0 0 0 0 0 0 0 0 H 0.045523 + + 1 + NaN NaN 102580.8 NaN 20180 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24843 98.192 NaN 109500 35 0 18235 0.261 + 14434 LEQALEQF 8 43 489.2505389464989 976.4865249597979 2 489.2505798339844 MULTI HCD FTMS 0 0 0 24832 24837.0078125 0.4470933085293261 -7 0.12677764892578125 11 Unmodified _LEQALEQF_ ENSG00000131018|ENST00000367255|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;ENST00000471834.1_1_6:152690575-152702320:-|nuORF;nc|ENSG00000131018|Q8NF91-10|SYNE1;nc|ENSG00000131018|Q8NF91-12|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1 10.823927491677226 0.514154816617796 2 {M(Oxidation (M))|F} 1 7 21.99 0 0 2.2519 0 0 811.4075282330385 0 811.4075282330385 0 21.90105620855803 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 2.2519 + + 5 + NaN NaN 125993.2 NaN 20181 4660 24832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24845 98.197 NaN 969840 35 0 211270 0.327 + 2834 DYLEWPEYF 9 85 631.2739114792811 1260.533270025362 2 631.2745971679688 MULTI HCD FTMS 0 0 0 24844 364825.9375 0.17731587971834392 -9 0.17929840087890625 1 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 78.7280429016045 0.006263961847259105 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F} 9 0 + 97.513 0 0 7.7358 7.7358 94.987 0 0 0 22.376430167995878 79.05243307145867 22.376430167995878 25.62334338466485 0 2.589136830878453 1.5228787452803376 0.6549471895720984 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWY[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWE[EP]{M(Oxidation (M))|F};[PS][SG]EPWE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}E[NG]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[WN]|[YH]}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}W{[YD]|[{M(Oxidation (M))|F}M]}PEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}TW{[VA]|[{I|L}G]}[C(Carbamidomethyl (C))S]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}T{[TV]|[{I|L}S]}CE[NG]{M(Oxidation (M))|F};YY{[HG]|PP}{[DA]|[EG]}PEY{M(Oxidation (M))|F} 7.7358;5.7031;5.1835;4.5157;4.4959;4.3562;3.8481;3.439;3.1345;3.0949 +;-;-;-;-;-;-;-;-;- + 2286 NaN NaN 235138.1 NaN 20182 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24846 98.201 NaN 254080 35 0 26307 0.263 + 2790 DYGIVADLF 9 43 506.75291217916237 1011.4912714251248 2 506.75274658203125 MULTI HCD FTMS 0 0 0 24844 113426.7265625 0.6740269320690878 2 -0.039093017578125 2 Unmodified _DYGIVADLF_ ENSG00000140374|ENST00000557943|ETFA;ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA 58.678817012210395 0.019429721296335044 2 {NN|[MP]|[D{I|L}]|[EV]}[YG]VAD{I|L}{M(Oxidation (M))|F} 9 2 + 77.598 0 0 7.6716 7.6716 87.923 0 0 0 13.044993472574902 53.83008036311672 13.044993472574902 2.309224750678922 0 2.3494850021680094 1.5228787452803376 0 0 {NN|[MP]|[D{I|L}]|[EV]}[YG]VAD{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}TAD{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]VAD{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}A{M(Oxidation (M))|F}TAD{M(Oxidation (M))|F}{I|L};{NN|[MP]|[D{I|L}]|[EV]}[YR]W{I|L}{M(Oxidation (M))|F};[YV]{[DA]|[EG]}VAD{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YR]W{M(Oxidation (M))|F}{I|L};[YV][PS]TAD{I|L}{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[YT][PG]D{I|L}{M(Oxidation (M))|F};[YV]{[DA]|[EG]}VAD{M(Oxidation (M))|F}{I|L} 7.6716;7.4433;6.5821;6.3538;5.7808;5.3305;4.6913;4.4389;4.3179;4.241 -;-;-;-;-;-;-;-;-;- 337 NaN NaN 129063.9 NaN 20183 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24847 98.205 NaN 141650 35 0 33878 0.261 + 11586 IYTDIIYIF 9 42 580.815436852262 1159.616320771324 2 580.8153076171875 MULTI HCD FTMS 0 0 0 24844 57223.68359375 0.41698322931474113 -3 0.07872772216796875 3 Unmodified _IYTDIIYIF_ ENSG00000135926|ENST00000258412|TMBIM1 28.486842064014134 0.11819662193267319 2 C{I|L}Y{I|L}{M(Oxidation (M))|F} 5 5 47.206 0 0 4.0708 0 0 502.299120017775 0 502.299120017775 0 46.49288766643714 0 0 0 0.9247425010840047 0 0 0 C{I|L}Y{I|L}{M(Oxidation (M))|F} 4.0708 - 15 NaN NaN 108410.7 NaN 20184 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24848 98.208 NaN 190990 35 0 31943 0.261 + 30429 VLPIPFPSF 9 47 508.7943690526085 1015.574185172017 2 508.794677734375 MULTI HCD FTMS 0 0 0 24844 57782.375 0.8516894986633594 -1 0.03955078125 4 Unmodified _VLPIPFPSF_ ENSG00000179820|ENST00000391770|MYADM 36.04419817259434 0.08350412372117409 2 [{I|L}P][{I|L}V]P{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 9 2 + 31.175 0 0 3.0697 3.0697 81.929 0 0 0 4.208187539523745 10.457574905606744 4.208187539523745 4.208187539523745 0 0.9247425010840047 1.3979400086720375 0 0 [{I|L}P][{I|L}V]P{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F};[{I|L}V][{I|L}P]P{M(Oxidation (M))|F}[PS]{M(Oxidation (M))|F} 3.0697;2.6554 -;+ + 23 NaN NaN 121523.6 NaN 20185 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24849 98.212 NaN 142140 35 0 11179 0.261 + 13619 KYPENFFLL 9 47 585.8130939134686 1169.6116348937371 2 586.3162841796875 MULTI HCD FTMS 0 0 0 24844 20985.693359375 0.4244816249008097 -3 0.07872772216796875 5 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 23.789781309258295 0.1548179064208189 2 [Y{I|L}][QT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 9 5 + 39.332 0 0 3.3628 3.3628 83.625 0 0 0 4.638787285696971 19.15423722065669 4.638787285696971 7.971062485323518 0 1 1.3979400086720375 0 0 [Y{I|L}][QT]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L};[YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L};[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KS]KK{I|L};[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QS]|[NT]}KK{I|L};[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QS]|[NT]}K{I|L}K;[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KS]K{I|L}K;[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[KS]{I|L}KK;[Y{M(Oxidation (M))|F}]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{[QS]|[NT]}{I|L}KK 3.3628;2.6813;0.56442;0.56442;0.15649;0.15649;0.049667;0.049667 -;-;-;-;-;-;-;- 77 NaN NaN 111423.7 NaN 20186 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24850 98.215 NaN 117160 35 0 28750 0.261 + -1 SYCCCCCD 8 35 564.1403548441107 NaN 0 564.1403198242188 PEAK HCD FTMS 0 0 0 24844 32809.66015625 0.6616804988242337 70 -1.1514892578125 6 4 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CD_ REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113693.2 NaN 20187 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24851 98.218 NaN 42111 35 0 5285.8 0.261 + -1 LLMQLRVH 8 35 513.2995040398094 1024.5844551464188 2 513.2996215820312 MULTI HCD FTMS 0 0 0 24844 23513.826171875 0.6017474302819272 10 -0.17945098876953125 7 Oxidation (M) _LLM(Oxidation (M))QLRVH_ REV__ENSG00000112159|ENST00000369393|MDN1 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 102782.3 NaN 20188 4661 24844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24853 98.223 NaN 2404200 35 0 564760 0.327 + 971 AYFDFPELL 9 78 557.7761525804725 1113.537752227745 2 557.7765502929688 MULTI HCD FTMS 0 0 0 24852 1471337.5 0.32945342197501093 7 -0.1177520751953125 1 Unmodified _AYFDFPELL_ ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L 147.8311659463005 1.1118996804784084E-05 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L} 9 0 + 92.833 0 0 8.3367 8.3367 88.642 0 0 0 1.6824376479242176 16.478174818886373 1.6824376479242176 1.6824376479242176 0 2.5994850021680094 1.3979400086720375 1.3807196863200843 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}D{M(Oxidation (M))|F}PE{I|L}{I|L};{[DA]|[EG]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}PE{I|L}{I|L};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{M(Oxidation (M))|F}DE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};{[DA]|[EG]}{M(Oxidation (M))|F}YE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};[HV]D{I|L}[{M(Oxidation (M))|F}E]E{I|L}{I|L};[EP]{I|L}{I|L}[Y{M(Oxidation (M))|F}]DA{M(Oxidation (M))|F};[EP]{I|L}[{M(Oxidation (M))|F}E][YV]A{M(Oxidation (M))|F};[HV][{M(Oxidation (M))|F}V]EEE{I|L}{I|L};[EP]{I|L}[YE][{M(Oxidation (M))|F}V]A{M(Oxidation (M))|F};[EP]{I|L}{I|L}[YE]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F} 8.3367;8.1856;5.6908;5.5397;3.9747;2.9243;1.1653;0.82762;0.63571;0.32186 +;-;-;-;-;-;-;-;-;- + 967 NaN NaN 455565.2 NaN 20189 4662 24852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24854 98.228 NaN 460900 35 0 64306 0.261 + 19306 NLYKKDLL 8 55 503.8013423706762 1005.5881318081524 2 503.7840881347656 MULTI HCD FTMS 0 0 0 24852 21472.466796875 0.26643729526873566 23 -0.41222381591796875 2 Unmodified _NLYKKDLL_ ENSG00000139990|ENST00000341516|DCAF5;ENST00000553943.1_1_14:69616197-69619695:-|nuORF;nc|ENSG00000139990|Q96JK2-3|DCAF5 10.823927491677226 0.514154816617796 2 {I|L}{I|L} 2 6 19.341 0 0 1.9233 0 0 761.4100243530575 0 761.4100243530575 0 0.2998363329962004 0 0 0 0.28872548999643577 0 0 0 + {I|L}{I|L} 1.9233 + + 45 NaN NaN 162557.8 NaN 20190 4662 24852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24855 98.231 NaN 39421 35 0 4776.1 0.261 + 24281 RYFLPPYTF 9 26 602.31396484375 NaN 0 602.31396484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 3.5964929083625545 0.27781873954207675 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88871.9 NaN 20191 4662 24852 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24857 98.236 NaN 329620 35 0 62061 0.327 + 32690 WPLEEVVLL 9 58 549.3157237243596 1096.616894515519 2 549.3159790039062 MULTI HCD FTMS 0 0 0 24856 46708.2109375 0.22796143150901432 -8 0.1829071044921875 1 Unmodified _WPLEEVVLL_ nc|ENSG00000089159|P49023-3|PXN 16.942295170755138 0.21397866736869717 2 V{I|L}{I|L} 3 6 36.198 0 0 3.3009 0 0 753.37114150215 0 753.37114150215 0 17.25772496747986 0 0 0 1 0 0 0 + V{I|L}{I|L} 3.3009 + + 171 NaN NaN 140193.5 NaN 20192 4663 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24858 98.241 NaN 148940 35 0 16273 0.261 -1 FCCSHLGSLME 11 44 642.2651396244074 1282.5157263156148 2 642.2651977539062 MULTI HCD FTMS 0 0 0 24856 45160.0703125 0.19485992880056466 -7 0.160247802734375 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))CSHLGSLME_ ENST00000381962.3_1_20:628196-628502:-|nuORF 4.897010918128616 0.3974440401582579 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[{M(Oxidation (M))|F}T]Y 8 -1 63.633 0 0 4.9616 0 0 0 162.05967672268812 162.05967672268812 49.34115329172698 0 0 0 0 2.4247425010840047 2 0 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[{M(Oxidation (M))|F}T]Y 4.9616 - 203 NaN NaN 113247.6 NaN 20193 4663 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24859 98.244 NaN 132350 35 0 30298 0.261 + 4492 EYIQFVPLL 9 42 561.3156651386481 NaN 0 561.3158569335938 PEAK HCD FTMS 0 0 0 24856 46749.4921875 0.340892000549626 13 -0.230926513671875 3 Unmodified _EYIQFVPLL_ ENSG00000179409|ENST00000319004|GEMIN4 22.736283301280096 0.1690317064107932 2 VP 2 7 17.959 0 0 1.6026 0 0 680.3178404317899 241.15488611392814 921.472726545718 0 0 0 0 0 1 0 0 0 + VP 1.6026 + + 10 + NaN NaN 112957.2 NaN 20194 4663 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24860 98.247 NaN 102190 35 0 6832.9 0.261 + 31015 VSLPPRVRRT 10 53 590.8667931935477 1179.7190334538952 2 590.8668212890625 MULTI HCD FTMS 0 0 0 24856 37122.8359375 0.15280501008404637 -6 0.14395904541015625 4 Unmodified _VSLPPRVRRT_ REV__nc|ENSG00000027869|Q9NP31-2|SH2D2A 1.3295316138638542 0.46826628246186464 2 D{M(Oxidation (M))|F} 2 -1 9.464 0 0 0.80222 0 0 414.3482581626827 500.2508944147094 914.5991525773921 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 0.80222 - 8 + NaN NaN 102902.6 NaN 20195 4663 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24861 98.251 NaN 113740 35 0 12936 0.261 + 7453 FVTTFVKPL 9 47 526.3126132476078 NaN 0 526.299560546875 PEAK HCD FTMS 0 0 0 24856 4935.408203125 0.47303263810994284 1 -0.01952362060546875 5 Unmodified _FVTTFVKPL_ REV__ENST00000204566.6_1_15:65255658-65255769:-|nuORF 7.910154910731844 0.25691533546754686 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.52203 0 0 620.3894344036156 280.1258944147094 900.5153288183251 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.52203 + + 25 + NaN NaN 107027.9 NaN 20196 4663 24856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24863 98.256 NaN 156120 35 0 13046 0.327 -1 0 57 582.3533343798229 1162.6921158264456 2 582.3536987304688 MULTI HCD FTMS 0 0 0 24862 83997.6875 0.2697501861859415 -7 0.163482666015625 1 NaN NaN 2 W 1 -1 8.2268 0 0 0.70757 0 0 166.1525172930456 807.4574679010374 973.609985194083 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.70757 - 18 + NaN NaN 115505.8 NaN 20197 4664 24862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24864 98.26 NaN 118450 35 0 15819 0.261 + 17151 LYLPSFFTY 9 51 575.7938539970115 1149.573155060823 2 575.7930297851562 MULTI HCD FTMS 0 0 0 24862 43514.62890625 0.31107030740816655 14 -0.25041961669921875 2 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 46.020951573049366 0.037705236580089195 2 {M(Oxidation (M))|F}TY 3 6 33.188 0 0 2.8869 0 0 720.3846436796945 0 720.3846436796945 0 2.501225267834002 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}TY 2.8869 + + 68 NaN NaN 113497.8 NaN 20198 4664 24862 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24866 98.265 NaN 1365300 35 0 200830 0.327 + 28971 TYAPLFSLPSF 11 62 621.8239976617849 1241.6334423903697 2 621.823974609375 MULTI HCD FTMS 0 0 0 24865 529781.3125 0.4954884341035825 6 -0.11126708984375 1 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 195.45211591753656 1.1367978711892094E-15 2 [YT]AP{I|L}{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F} 11 0 + 125.34 0 0 10.095 10.095 96.216 0 0 0 9.45886570567589 9.45886570567589 9.45886570567589 14.203103093438983 0 3.579689690656103 1.6989700043360187 1.9604093769761874 0 + + [YT]AP{I|L}{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]AP{I|L}{M(Oxidation (M))|F}S{I|L}SP{M(Oxidation (M))|F};[YT]APV{M(Oxidation (M))|F}T{I|L}PS{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}T{I|L}{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[PS]{M(Oxidation (M))|F}{I|L}T{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YT]VVS{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]A[{I|L}T]{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F};[YT]AP{I|L}{M(Oxidation (M))|F}[VP]TS{M(Oxidation (M))|F};[YV]S[VP]{M(Oxidation (M))|F}S{I|L}PS{M(Oxidation (M))|F};[YV]S{I|L}S{M(Oxidation (M))|F}[VP]PS{M(Oxidation (M))|F} 10.095;8.951;8.0573;7.84;7.7372;7.6863;7.0767;6.8882;6.657;6.6021 +;-;-;-;-;-;-;-;-;- + 1787 NaN NaN 307900.1 NaN 20199 4665 24865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24867 98.269 NaN 165190 35 0 57655 0.261 -1 EMGFRMDHE 9 40 584.2318285471005 1166.4491041610008 2 584.23193359375 MULTI HCD FTMS 0 0 0 24865 36832.10546875 0.154033087462454 6 -0.11126708984375 2 Oxidation (M) _EMGFRM(Oxidation (M))DHE_ ENSG00000130772|ENST00000373842|MED18 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117377.7 NaN 20200 4665 24865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24868 98.273 NaN 91344 35 0 8228.1 0.261 + 17391 LYQILQGIVF 10 42 597.3497238791672 NaN 0 597.2974243164062 PEAK HCD FTMS 0 0 0 24865 17794.21484375 0.7388268575490734 6 -0.11126708984375 3 Unmodified _LYQILQGIVF_ ENSG00000170312|ENST00000395284|CDK1 9.38312468134398 0.33215363477037435 2 YY 2 9 7.9588 0 0 0.6673 0 0 131.20776170435107 732.3363031741364 863.5440648784875 0 0 0 0 0 0 0 0 0 YY 0.6673 - 19 + NaN NaN 105797.1 NaN 20201 4665 24865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24869 98.276 NaN 42086 35 0 4671.1 0.261 -1 EFICRKCQM 9 27 607.7803785537062 NaN 0 607.7813720703125 PEAK HCD FTMS 0 0 0 24865 19938.93359375 0.6443581687102276 4 -0.07575225830078125 4 Carbamidomethyl (C) _EFIC(Carbamidomethyl (C))RKCQM_ ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3|ZFHX4 3.5964929083625545 0.27781873954207675 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99904.3 NaN 20202 4665 24865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24871 98.281 NaN 130190 35 0 4094 0.411 -1 MRRRRKIILMN 11 85 501.6342989379548 1501.8810674140643 3 501.6340637207031 MULTI HCD FTMS 0 0 0 24870 46468.21484375 0.3682304755582969 7 -0.15717315673828125 1 Oxidation (M) _MRRRRKIILM(Oxidation (M))N_ ENST00000559471.5_1_15:49284721-49284799:-|nuORF 0.5059551277355931 0.4167017191902429 2 A 1 -1 9.6041 0 0 0.63947 0 0 105.08012831921413 1322.7533820529152 1427.8335103721292 0 0 0 0 0 0.5 0 0 0 A 0.63947 - 14 + NaN NaN 145855.1 NaN 20203 4666 24870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24873 98.289 NaN 195530 35 0 10223 0.327 + -1 VRKYKEKKLMF 11 58 495.9587413998472 1484.8543947997416 3 495.9587707519531 MULTI HCD FTMS 0 0 0 24872 108623.6171875 0.45165299173241014 12 -0.23671722412109375 1 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 1.1097533296519684 0.4140536653900533 2 K 1 -1 7.4743 0 0 0.50337 0 0 938.5293958757167 415.19780476215146 1353.727200637868 0 0 0 0 0 0.5 0 0 0 K 0.50337 + + 25 + NaN NaN 122239.9 NaN 20204 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24874 98.293 NaN 137670 35 0 25621 0.261 + 22884 QYPFPLPVF 9 39 554.2972430662492 1106.5799331992982 2 554.2984008789062 MULTI HCD FTMS 0 0 0 24872 47358.81640625 0.04471598962919075 28 -0.5116195678710938 2 Unmodified _QYPFPLPVF_ ENSG00000145414|ENST00000274054|NAF1 21.74664581756881 0.17247014374749275 2 NP{I|L}[VP]{M(Oxidation (M))|F} 6 4 33.288 0 0 3.0082 0 0 421.216112205275 0 421.216112205275 0 22.830918867322296 0 0 0 1.4247425010840047 0 0 0 NP{I|L}[VP]{M(Oxidation (M))|F} 3.0082 - 29 NaN NaN 117539.5 NaN 20205 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24875 98.297 NaN 206340 35 0 76959 0.261 + 21266 PRMPCCCNPF 10 33 584.2318285471005 1166.4491041610008 2 584.2318115234375 MULTI HCD FTMS 0 0 0 24872 47449.30078125 0.19843455062517804 8 -0.165496826171875 3 Unmodified _PRMPCCCNPF_ ENST00000372390.8_1_X:106956815-106956884:-|nuORF 3.944395688203298 0.4544253912184634 2 P{M(Oxidation (M))|F} 2 8 20.445 0 0 1.7528 0 0 904.3179223756478 0 904.3179223756478 0 20.445312593723983 0 0 0 0.4247425010840047 0 0 0 + P{M(Oxidation (M))|F} 1.7528 + + 9 + NaN NaN 128132.8 NaN 20206 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24876 98.3 NaN 117740 35 0 17881 0.261 + 30430 VLPIPFPSF 9 48 508.7943690526085 1015.574185172017 2 508.7942810058594 MULTI HCD FTMS 0 0 0 24872 35305.1015625 0.5203833219043803 5 -0.1168060302734375 4 Unmodified _VLPIPFPSF_ ENSG00000179820|ENST00000391770|MYADM 36.04419817259434 0.08350412372117409 2 P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3 6 7.0514 0 0 0.69432 0 0 666.4102580253358 0 666.4102580253358 0 7.051368718728812 0 0 0 0.5 0 0 0 + P{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 0.69432 + + 8 + NaN NaN 115971.7 NaN 20207 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24877 98.303 NaN 164620 35 0 13512 0.261 + 13848 KYPSPFFVF 9 61 566.2984386510994 NaN 0 566.2982177734375 PEAK HCD FTMS 0 0 0 24872 27273.224609375 0.5347675944852178 5 -0.1168060302734375 5 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 24.020572477871973 0.16041128140741606 2 NPV 3 7 15.01 0 0 1.3276 0 0 655.3421032770051 162.05567346744377 817.3977767444488 0 0 0 0 0 1.3494850021680094 0 0 0 NPV 1.3276 - 79 + NaN NaN 118531.1 NaN 20208 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24878 98.307 NaN 90008 35 0 7765.3 0.261 + 11153 IYIPTAILW 9 39 545.3207594520673 1088.6269659709344 2 545.3211669921875 MULTI HCD FTMS 0 0 0 24872 6174.4755859375 0.012016889953890391 17 -0.337188720703125 6 Unmodified _IYIPTAILW_ ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1 44.40701690623563 0.04511410083598184 2 {I|L}{I|L}W 3 6 38.188 0 0 3.5079 0 0 658.3691273419937 0 658.3691273419937 0 5.740312677277188 0 0 0 1.3494850021680094 0 0 0 + {I|L}{I|L}W 3.5079 + + 32 NaN NaN 105857.8 NaN 20209 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24879 98.31 NaN 120750 35 0 17701 0.261 + 6271 FPFGFFTTV 9 39 531.7681744940345 1061.521796054869 2 531.7682495117188 MULTI HCD FTMS 0 0 0 24872 18205.474609375 0.2100673976909992 -4 0.05272674560546875 7 Unmodified _FPFGFFTTV_ ENSG00000204308|ENST00000375094|RNF5 10.823927491677226 0.26684000660059787 2 E[{M(Oxidation (M))|F}T]TV 5 5 26.466 0 0 2.4932 0 0 466.24179030943225 0 466.24179030943225 0 26.46591250700361 0 0 0 0.4247425010840047 0 0 0 E[{M(Oxidation (M))|F}T]TV 2.4932 - 11 NaN NaN 106744.6 NaN 20210 4667 24872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24881 98.315 NaN 251020 35 0 15286 0.327 + 446 ALLERQRRRQ 10 69 442.60100682455743 1324.7811910738724 3 442.6009521484375 MULTI HCD FTMS 0 0 0 24880 129205.4765625 0.6662332482932566 -2 0.03363037109375 1 Unmodified _ALLERQRRRQ_ REV__ENSG00000135622|ENST00000357877|SEMA4F;REV__nc|ENSG00000135622|O95754-2|SEMA4F 1.4551175022131473 0.4676015363898197 2 [Y{I|L}]{M(Oxidation (M))|F} 3 -1 20.211 0 0 1.5256 0 0 0 898.583076410063 898.583076410063 15.607391022493964 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]{M(Oxidation (M))|F} 1.5256 - 5 NaN NaN 135618.5 NaN 20211 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24882 98.319 NaN 207450 35 0 28353 0.261 + 342 AGSWIFSHNQR 11 50 434.88224415495614 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 24880 66994.4296875 0.46019739687791067 -5 0.0786895751953125 2 Unmodified _AGSWIFSHNQR_ REV__ENSG00000051341|ENST00000264233|POLQ;REV__nc|ENSG00000051341|O75417-2|POLQ;REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;REV__POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant 1.214830529360525 0.33867401910978034 2 N 1 -1 5.4846 0 0 0.63204 0 0 451.53306023198417 299.14951502017817 750.6825752521623 0 0 0 0 0 0 0 0 0 N 0.63204 + + 2 + NaN NaN 131160.6 NaN 20212 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24883 98.323 NaN 321900 35 0 25402 0.261 + 11248 IYLINSWPF 9 72 576.8083305084548 1151.6021080837095 2 576.8084716796875 MULTI HCD FTMS 0 0 0 24880 43852.77734375 0.2941142057889378 -3 0.04959869384765625 3 Unmodified _IYLINSWPF_ ENSG00000154803|ENST00000285071|FLCN;FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;nc|ENSG00000154803|Q8NFG4-2|FLCN 92.65332237495696 0.004456439685314431 2 [Y{I|L}]{I|L}{I|L}NSWP{M(Oxidation (M))|F} 9 0 + 98.361 0 0 8.5413 8.5413 95.296 0 0 0 19.621892823592972 92.87675834661917 19.621892823592972 16.510234424404686 0 2.5189301784845295 1.3979400086720375 0.6307196863200843 0.7302046884880937 + + [Y{I|L}]{I|L}{I|L}NSWP{M(Oxidation (M))|F};[Y{I|L}]{I|L}{I|L}GGSWP{M(Oxidation (M))|F};[Y{I|L}]{I|L}[WK]{[DA]|[EG]}P{M(Oxidation (M))|F};[Y{I|L}]{I|L}[WK][VS]P{M(Oxidation (M))|F};[YV]WS[QP]{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]{I|L}Y[YR][YV] 8.5413;7.1076;5.0489;5.0489;2.4468;1.6287 +;-;-;-;-;- + 350 NaN NaN 132389.1 NaN 20213 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24884 98.326 NaN 40335 35 0 6527.9 0.261 + 10909 IWRPNRVF 8 25 544.3130525057652 NaN 0 544.3134155273438 PEAK HCD FTMS 0 0 0 24880 6698.046875 0.03141097966791668 17 -0.32062530517578125 4 Unmodified _IWRPNRVF_ ENSG00000197562|ENST00000248139|RAB40C;ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C 2.302733041254933 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.64326 0 0 148.1580515205605 822.3505343072874 970.5085858278478 0 0 0 0 0 0 0 0 0 + {I|L} 0.64326 + + 2 + NaN NaN 112510 NaN 20214 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24885 98.329 NaN 91686 35 0 22377 0.261 + 3611 EKPIIKVKVGS 11 38 599.3811853352686 NaN 0 599.380615234375 PEAK HCD FTMS 0 0 0 24880 16311.7421875 0.20933851570492806 -1 0.02596282958984375 5 Unmodified _EKPIIKVKVGS_ REV__ENSG00000204379|ENST00000375602|XAGE1A;REV__ENSG00000204382|ENST00000375616|XAGE1B;REV__ENST00000494039.1_X:52241120-52243863:+|nuORF 1.1933415558491238 0.338734977139133 2 QM 2 -1 7.9588 0 0 0.66504 0 0 506.35152975081206 428.28009973697505 934.6316294877871 0 0 0 0 0 0 0 0 0 QM 0.66504 - 14 + NaN NaN 118163.7 NaN 20215 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24886 98.333 NaN 64219 35 0 5537.6 0.261 -1 ICCCCCCW 8 35 525.6442984124856 NaN 0 525.643798828125 PEAK HCD FTMS 0 0 0 24880 16872.181640625 0.5169383330178725 -8 0.1573333740234375 6 2 Carbamidomethyl (C) _ICCCCC(Carbamidomethyl (C))C(Carbamidomethyl (C))W_ ENSG00000130054|ENST00000252338|NALF2 0.7936320650641473 0.38822285293237185 2 C 1 -1 3.4949 0 0 0.33307 0 0 487.9957368622773 455.2491854303344 943.2449222926117 0 0 0 0 0 0 0 0 0 C 0.33307 + + 1 + NaN NaN 107790.5 NaN 20216 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24887 98.336 NaN 133310 35 0 28549 0.261 -1 0 55 528.411037707078 NaN 0 528.4525756835938 PEAK HCD FTMS 0 0 0 24880 5712.02685546875 0.1745788670201513 -2 0.03363037109375 7 NaN NaN 2 {M(Oxidation (M))|F}W 2 -1 7.0783 0 0 0.67106 0 0 130.33176672099336 588.2850435846311 718.6168103056245 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}W 0.67106 - 38 + NaN NaN 103509.6 NaN 20217 4668 24880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24889 98.341 NaN 5097900 35 0 1287300 0.327 + 2835 DYLEWPEYF 9 100 631.2739114792811 1260.533270025362 2 631.27392578125 MULTI HCD FTMS 0 0 0 24888 1851353 0.8998107100435949 -1 0.026153564453125 1 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 111.28704002717404 0.0027322905094575235 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F} 9 0 + 109.39 0 0 8.6781 8.6781 95.233 0 0 0 18.903400603743506 78.85992191423391 18.903400603743506 15.458248768983324 0 2.774227503252014 1.6989700043360187 1.0044321917401078 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}WEPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWP[Y{M(Oxidation (M))|F}]E;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWY[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EGE{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]DEWPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWE[EP]{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EGE{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F} 8.6781;7.4518;6.713;6.6781;6.6169;6.3701;6.3163;6.2779;6.2551;5.9699 +;-;-;-;-;-;-;-;-;- + 12871 NaN NaN 861476.3 NaN 20218 4669 24888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24890 98.345 NaN 158280 35 0 22708 0.261 + 28119 TIKAIVQILAQ 11 59 599.3811853352686 NaN 0 599.3716430664062 PEAK HCD FTMS 0 0 0 24888 77920.40625 1 0 0 2 Unmodified _TIKAIVQILAQ_ REV__ENSG00000204764|ENST00000523189|RANBP17;REV__ENST00000443155.5_1_5:170288887-170338173:+|nuORF;REV__ENST00000519130.5_1_5:170289037-170336799:+|nuORF;REV__ENST00000523727.1_1_5:170308890-170323149:+|nuORF;REV__nc|ENSG00000204764|Q9H2T7-2|RANBP17 2.735195868890462 0.3343611804837492 2 VQM 3 -1 12.703 0 0 1.0615 0 0 407.28207174299956 428.2798250787719 835.5618968217715 0 0 0 0 0 0 0 0 0 VQM 1.0615 - 67 + NaN NaN 124885.5 NaN 20219 4669 24888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24892 98.35 NaN 1521800 35 0 387680 0.327 + 4694 EYPFILDAF 9 68 557.7761525804725 1113.537752227745 2 557.776611328125 MULTI HCD FTMS 0 0 0 24891 1152650.375 0.2580948357426692 15 -0.28488922119140625 1 Unmodified _EYPFILDAF_ ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF 120.45040980043947 0.0012363446172167195 2 [EP]Y{M(Oxidation (M))|F}{I|L}{I|L}DA{M(Oxidation (M))|F} 9 2 + 84.848 0 0 7.6197 7.6197 93.516 0 0 0 6.267186419914097 12.830918867322296 6.267186419914097 14.69273760456403 0 2.4247425010840047 0 1.8539171939081172 0 [EP]Y{M(Oxidation (M))|F}{I|L}{I|L}DA{M(Oxidation (M))|F};[YE]P{M(Oxidation (M))|F}{I|L}{I|L}DA{M(Oxidation (M))|F};{[DA]|[EG]}{M(Oxidation (M))|F}Y{M(Oxidation (M))|F}[EP]{I|L}{I|L};{[DA]|[EG]}{M(Oxidation (M))|F}YE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{I|L};[YE]{[CT]|[{M(Oxidation (M))|F}G]}{M(Oxidation (M))|F}[EP]{I|L}{I|L} 7.6197;6.3002;4.7429;3.507;0.86439 -;+;-;-;- + 484 NaN NaN 319326 NaN 20220 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24893 98.355 NaN 749310 35 0 132280 0.261 + 28320 TMFGEFILL 9 57 535.7830608076239 1069.5515686820477 2 535.7833862304688 MULTI HCD FTMS 0 0 0 24891 242955.5 0.5637599816338372 -4 0.069366455078125 2 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 41.855 0 0 3.9133 0 0 565.221483299025 0 565.221483299025 0 24.776296993281406 0 0 0 1.2302046884880937 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.9133 + + 45 NaN NaN 215241.7 NaN 20221 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24894 98.358 NaN 236150 35 0 55324 0.262 + 32439 WCQRVRQHSP 10 51 432.88545882623606 NaN 0 432.88531494140625 PEAK HCD FTMS 0 0 0 24891 173013.078125 0.5196128219788619 -3 0.06169891357421875 3 Unmodified _WCQRVRQHSP_ REV__ENST00000572565.5_1_19:52207684-52207765:+|nuORF 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124219.4 NaN 20222 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24895 98.362 NaN 120370 35 0 23554 0.261 + 12444 KQIKIQDIIV 10 51 599.3811853352686 NaN 0 599.3822021484375 PEAK HCD FTMS 0 0 0 24891 42620.1171875 0.5469699047866553 1 -0.02593231201171875 4 Unmodified _KQIKIQDIIV_ ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12 3.2813086475875832 0.33737594360511275 2 QM 2 9 10.969 0 0 0.91658 0 0 506.3543984031558 428.2800387018188 934.6344371049746 0 0 0 0 0 0 0 0 0 QM 0.91658 - 13 + NaN NaN 125786.4 NaN 20223 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24896 98.365 NaN 92075 35 0 9993.1 0.261 + 17322 LYPQLFVVL 9 46 546.3282376618336 1090.641922390467 2 546.3286743164062 MULTI HCD FTMS 0 0 0 24891 20517.283203125 0.5163562176719741 1 -0.02593231201171875 5 Unmodified _LYPQLFVVL_ ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 8.593279151180031 0.2858735984551981 2 Y 1 8 9.6041 0 0 0.88059 0 0 166.17501672816076 758.3873247505373 924.562341478698 0 0 0 0 0 0.5 0 0 0 + Y 0.88059 + + 26 + NaN NaN 109710.8 NaN 20224 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24897 98.368 NaN 91303 35 0 16226 0.261 + -1 KRRQLCVRKLM 11 49 510.6341176183331 1528.8805234551994 3 510.6344299316406 MULTI HCD FTMS 0 0 0 24891 23970.166015625 0.2608428287804864 35 -0.6190032958984375 6 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 S 1 -1 1.5938 0 0 0.10425 0 0 1221.7162606151587 217.10825525455314 1438.8245158697118 0 0 0 0 0 0 0 0 0 S 0.10425 - 9 + NaN NaN 98393.6 NaN 20225 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24898 98.371 NaN 37277 35 0 3468 0.261 + 33504 YIDLAEGQPIG 11 26 588.2999024214696 NaN 0 588.16845703125 PEAK HCD FTMS 0 0 0 24891 5947.6552734375 0.8187081510768432 -1 0.00958251953125 7 Unmodified _YIDLAEGQPIG_ REV__ENSG00000140521|ENST00000268124|POLG 3.2813086475875832 0.3328120158028032 2 T 1 -1 1.9897 0 0 0.1694 0 0 504.41119292712034 566.0944918268186 1070.505684753939 0 0 0 0 0 0 0 0 0 T 0.1694 - 1 + NaN NaN 111837.6 NaN 20226 4670 24891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24900 98.376 NaN 550220 35 0 61182 0.327 -1 FCCSHLGSLME 11 52 642.2651396244074 1282.5157263156148 2 642.2652587890625 MULTI HCD FTMS 0 0 0 24899 186073.671875 0.8028841009839189 1 -0.0291748046875 1 Carbamidomethyl (C) _FC(Carbamidomethyl (C))CSHLGSLME_ ENST00000381962.3_1_20:628196-628502:-|nuORF 11.494710602746466 0.35692862141139436 2 DY{I|L}EWP 6 -1 81.503 0 0 6.3549 0 0 0 476.14524255924067 476.14524255924067 32.30249918074449 0 0 0 0 2.274227503252014 2 0 0 DY{I|L}EWP 6.3549 - 940 + NaN NaN 173012.9 NaN 20227 4671 24899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24901 98.381 NaN 332830 35 0 66760 0.262 + 32691 WPLEEVVLL 9 55 549.3157237243596 1096.616894515519 2 549.3160400390625 MULTI HCD FTMS 0 0 0 24899 204895.234375 1 0 0 2 Unmodified _WPLEEVVLL_ nc|ENSG00000089159|P49023-3|PXN 11.640296217721598 0.25978676193971967 2 V{I|L}{I|L} 3 6 35.445 0 0 3.2322 0 0 753.3696131967935 0 753.3696131967935 0 8.450528104279016 0 0 0 0.9247425010840047 0 0 0 + V{I|L}{I|L} 3.2322 + + 82 NaN NaN 147414.6 NaN 20228 4671 24899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24902 98.384 NaN 612120 35 0 75951 0.261 + 11009 IYEPNFIFF 9 59 595.3002988434641 1188.5860447537282 2 595.3003540039062 MULTI HCD FTMS 0 0 0 24899 199875.84375 0.9667168764838497 -1 0.02593231201171875 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 56.17704186161178 0.022929533404884107 2 [Y{I|L}]ENP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 72.748 0 0 6.1205 6.1205 90.588 0 0 0 19.990823894397558 47.85335007137462 19.990823894397558 13.455612550363789 0 1.774227503252014 1.5228787452803376 0 0.4247425010840047 [Y{I|L}]ENP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]EGGP{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1205;4.9885 -;- 98 NaN NaN 199276 NaN 20229 4671 24899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24903 98.388 NaN 487570 35 0 73486 0.261 + 32407 VYYPELFVW 9 56 608.3082264539318 1214.6018999746634 2 608.3084716796875 MULTI HCD FTMS 0 0 0 24899 153615 0.12098815459689419 -7 0.1208343505859375 4 Unmodified _VYYPELFVW_ ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion 67.34385681178166 0.00994769994983633 2 [YV]Y[EP]{I|L}{M(Oxidation (M))|F}VW 9 0 + 72.641 0 0 5.9807 5.9807 91.741 0 0 0 3.1947654920421087 3.1947654920421087 3.1947654920421087 23.95197263142329 0 2.6989700043360187 1.154901959985743 0 0 + + [YV]Y[EP]{I|L}{M(Oxidation (M))|F}VW;{[CT]|[{M(Oxidation (M))|F}G]}V{M(Oxidation (M))|F}{I|L}[EP]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[WQ]{M(Oxidation (M))|F}VW;[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F}{I|L}[EP]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[TV]|[{I|L}S]}TW;[{M(Oxidation (M))|F}V]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{M(Oxidation (M))|F}VW;[R{M(Oxidation (M))|F}]Y[RK]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}W 5.9807;4.0087;3.3267;3.2042;2.7468;2.7468;1.4089 +;-;-;-;-;-;- + 435 NaN NaN 165906.3 NaN 20230 4671 24899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24904 98.391 NaN 36644 35 0 6755.1 0.261 + 3871 EPLKRSVVYI 10 22 602.359130859375 NaN 0 602.359130859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EPLKRSVVYI_ ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1 1.6526216038709556 0.33876987398426067 2 S 1 9 6.9897 0 0 0.58165 0 0 622.3869592755874 489.2715242975219 1111.6584835731094 0 0 0 0 0 0 0 0 0 + S 0.58165 + + 2 + NaN NaN 99885.9 NaN 20231 4671 24899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24905 98.401 NaN 91555 35 0 12904 0.261 -1 0 47 551.4040279446164 NaN 0 551.7947998046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 Q 1 -1 6.9897 0 0 0.63497 0 0 750.626798709742 219.07727991275627 969.7040786224983 0 0 0 0 0 0 0 0 0 Q 0.63497 - 3 + NaN NaN 102219.6 NaN 20232 4671 24899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24907 98.406 NaN 308000 35 0 26346 0.327 -1 0 71 582.3533343798229 1162.6921158264456 2 582.3538208007812 MULTI HCD FTMS 0 0 0 24906 215013.21875 0.6904934828146437 1 -0.0326995849609375 1 NaN NaN 2 P 1 -1 5.8412 0 0 0.50239 0 0 669.3964442949988 393.2126558893188 1062.6091001843176 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.50239 - 18 + NaN NaN 138682.2 NaN 20233 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24908 98.41 NaN 560520 35 0 68884 0.261 + 28972 TYAPLFSLPSF 11 59 621.8239976617849 1241.6334423903697 2 621.8239135742188 MULTI HCD FTMS 0 0 0 24906 98327.78125 0.0919629990920869 13 -0.2297821044921875 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 79.59630418116434 0.00602749115067055 2 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 8 3 67.484 0 0 5.4351 0 0 0 346.14156869472316 346.14156869472316 58.53199407328319 0 0 0 0 2.3494850021680094 2 0.7614393726401688 0 + [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 5.4351 + + 263 NaN NaN 178046 NaN 20234 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24909 98.413 NaN 200680 35 0 11342 0.261 + 20446 PALARRRIDL 10 65 590.8667931935477 1179.7190334538952 2 590.866943359375 MULTI HCD FTMS 0 0 0 24906 126812.6796875 0.5219863275278194 3 -0.0486907958984375 3 Unmodified _PALARRRIDL_ REV__ENSG00000113971|ENST00000337331|NPHP3;REV__ENST00000471702.2_2_3:132363653-132416205:-|nuORF;REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF;REV__nc|ENSG00000113971|Q7Z494-2|NPHP3 5.731851221503515 0.44496410492002586 2 A 1 -1 7.4743 0 0 0.63356 0 0 281.18730444869396 824.4870175285333 1105.6743219772272 0 0 0 0 0 0.5 0 0 0 A 0.63356 + + 20 + NaN NaN 125713 NaN 20235 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24910 98.417 NaN 140660 35 0 37739 0.261 + 11587 IYTDIIYIF 9 32 580.815436852262 1159.616320771324 2 580.816162109375 MULTI HCD FTMS 0 0 0 24906 39638.53125 0.2888419921244557 8 -0.14601898193359375 4 Unmodified _IYTDIIYIF_ ENSG00000135926|ENST00000258412|TMBIM1 23.1484247019978 0.1603590852062899 2 {I|L}[Y{I|L}]{M(Oxidation (M))|F} 4 5 26.198 0 0 2.2592 0 0 605.3047113245408 0 605.3047113245408 0 26.197887582883936 0 0 0 1 0 0 0 + {I|L}[Y{I|L}]{M(Oxidation (M))|F} 2.2592 + + 5 NaN NaN 112761.5 NaN 20236 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24911 98.42 NaN 270750 35 0 23754 0.261 -1 MPSSVSWGIL 10 62 546.7742880755892 1091.5340232179783 2 546.7752685546875 MULTI HCD FTMS 0 0 0 24906 16299.7431640625 0.26634821888949783 1 -0.0326995849609375 5 Oxidation (M) _M(Oxidation (M))PSSVSWGIL_ ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1 24.020572477871973 0.2864316864133941 2 {I|L}P{[{M(Oxidation (M))|F}H]|[RQ]}SPE 7 -1 26.348 0 0 2.4138 0 0 266.1600514142594 0 266.1600514142594 0 0.3786476671105987 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {I|L}P{[{M(Oxidation (M))|F}H]|[RQ]}SPE 2.4138 - 83 NaN NaN 136124 NaN 20237 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24912 98.423 NaN 175940 35 0 27398 0.261 + 13620 KYPENFFLL 9 53 585.8130939134686 1169.6116348937371 2 585.8134155273438 MULTI HCD FTMS 0 0 0 24906 18629.654296875 0.2632009949249336 29 -0.51861572265625 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3604603498062 0 778.3604603498062 0 14.744237387763093 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 20 NaN NaN 115914 NaN 20238 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24913 98.427 NaN 67778 35 0 6275.5 0.261 -1 0 38 515.332705061845 514.325428595245 1 515.812744140625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95937.2 NaN 20239 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24914 98.43 NaN 45987 35 0 4588.3 0.261 + 6990 FPVWFEYP 8 26 542.759033203125 NaN 0 542.759033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _FPVWFEYP_ ENSG00000132640|ENST00000378226|BTBD3;nc|ENSG00000132640|Q9Y2F9-2|BTBD3 5.230669730166228 0.38822285293237185 2 P 1 7 11.237 0 0 1.0371 0 0 147.06511088019187 836.3617647760374 983.4268756562292 0 0 0 0 0 0.4247425010840047 0 0 0 + P 1.0371 + + 1 + NaN NaN 99502.9 NaN 20240 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24915 98.433 NaN 67591 35 0 6183.4 0.261 + 8071 GIGWGWRF 8 42 489.75262451171875 NaN 0 489.75262451171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _GIGWGWRF_ chrX:152697653-152698631|218|21.68|0.0|21.05|-|1|MAGEA3-DT,MAGEA3-DT|1 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119249.8 NaN 20241 4672 24906 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24917 98.438 NaN 1043200 35 0 276550 0.327 + 4885 FAFPDEFVF 9 67 559.7632013013268 1117.5118496694536 2 559.7634887695312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FAFPDEFVF_ ENSG00000123159|ENST00000393033|GIPC1;ENSG00000137960|ENST00000370759|GIPC2;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1 104.79918948944588 0.003791450360204016 2 {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}PDE{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 80.116 0 0 7.1692 7.1692 92.096 0 0 0 4.762036441594191 74.63160941989898 4.762036441594191 12.25772496747986 0 3.079689690656103 0 0.4247425010840047 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}PDE{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{M(Oxidation (M))|F}PDE{M(Oxidation (M))|F}{M(Oxidation (M))|F}V 7.1692;6.0723 +;- + 165 NaN NaN 258418.5 NaN 20242 4673 24916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24919 98.445 NaN 189990 35 0 14691 0.327 + 3211 EDESEIEEFY 10 67 645.2555943194893 1288.4966357057785 2 645.2534790039062 MULTI HCD FTMS 0 0 0 24918 78405.59375 0.583397471163554 5 -0.080291748046875 1 Unmodified _EDESEIEEFY_ ENSG00000096717|ENST00000212015|SIRT1;nc|ENSG00000096717|Q96EB6-2|SIRT1 10.073929032068715 0.4168838835836452 2 PE[Y{M(Oxidation (M))|F}]QM{M(Oxidation (M))|F} 7 8 31.801 0 0 2.4681 0 0 328.1421375959 0 328.1421375959 0 18.613423602439454 0 0 0 0.75 0 0.7302046884880937 0 PE[Y{M(Oxidation (M))|F}]QM{M(Oxidation (M))|F} 2.4681 - 145 NaN NaN 122155.2 NaN 20243 4674 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24920 98.449 NaN 80072 35 0 8821.6 0.264 -1 MVHMPGGH 8 43 441.19111584996494 NaN 0 440.7992858886719 PEAK HCD FTMS 0 0 0 24918 17609.333984375 0.45635359468377196 -6 0.130462646484375 2 Oxidation (M) _M(Oxidation (M))VHMPGGH_ ENST00000461395.5_1_2:220397036-220397240:+|nuORF 2.8892196856762586 0.38822285293237185 2 P 1 -1 2.2185 0 0 0.252 0 0 555.2042704188768 225.08828149967033 780.2925519185471 0 0 0 0 0 0 0 0 0 P 0.252 + + 2 + NaN NaN 98262.6 NaN 20244 4674 24918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24922 98.454 NaN 242630 35 0 11252 0.327 + 23870 RSRAPVLSRQR 11 77 442.60100682455743 1324.7811910738724 3 442.60101318359375 MULTI HCD FTMS 0 0 0 24921 134684.921875 0.6944873807535493 4 -0.07122039794921875 1 Unmodified _RSRAPVLSRQR_ ENST00000592467.1_1_19:1261169-1261487:+|nuORF 1.1097533296519684 0.4140536653900533 2 N 1 11 9.732 0 0 0.73461 0 0 370.2227053508024 837.4738253229124 1207.6965306737147 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.73461 - 11 + NaN NaN 124771.9 NaN 20245 4675 24921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24923 98.459 NaN 234530 35 0 12842 0.261 + -1 VRKYKEKKLMF 11 75 495.9587413998472 1484.8543947997416 3 495.95892333984375 MULTI HCD FTMS 0 0 0 24921 107582.90625 0.4473257540596013 19 -0.33319091796875 2 Oxidation (M) _VRKYKEKKLM(Oxidation (M))F_ REV__ENST00000604204.1_1_6:3023831-3023987:-|nuORF 1.1097533296519684 0.4140536653900533 2 Q 1 -1 9.6041 0 0 0.6468 0 0 810.4859388444667 543.3016451471311 1353.7875839915978 0 0 0 0 0 0.5 0 0 0 Q 0.6468 - 85 + NaN NaN 116421.1 NaN 20246 4675 24921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24924 98.462 NaN 263070 35 0 54860 0.261 + 6272 FPFGFFTTV 9 56 531.7681744940345 1061.521796054869 2 531.768310546875 MULTI HCD FTMS 0 0 0 24921 85764.0078125 0.9896046284585657 3 -0.05171966552734375 3 Unmodified _FPFGFFTTV_ ENSG00000204308|ENST00000375094|RNF5 26.88365393820708 0.12808753336095696 2 E{M(Oxidation (M))|F}TTV 5 5 47.691 0 0 4.4927 0 0 466.2420800768389 0 466.2420800768389 0 37.23320034371433 0 0 0 0.8494850021680094 0 0.4247425010840047 0 E{M(Oxidation (M))|F}TTV 4.4927 - 106 NaN NaN 121365.1 NaN 20247 4675 24921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24926 98.467 NaN 3391900 35 0 830670 0.327 + 2836 DYLEWPEYF 9 92 631.2739114792811 1260.533270025362 2 631.2741088867188 MULTI HCD FTMS 0 0 0 24925 1852744.125 0.9004868367325675 5 -0.1074981689453125 1 Unmodified _DYLEWPEYF_ ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD 136.33342141710068 0.00022087650154924235 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F} 9 0 + 111.98 0 0 8.8837 8.8837 96.619 0 0 0 27.024597658517052 95.21406035846648 27.024597658517052 25.999686271123096 0 2.7134679910804405 1.6989700043360187 1.3243923658886185 0 + + {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWPEY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EWYPE{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YWEPE{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}YGQE{I|L}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[DA]|[EG]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}N{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}GG{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}YDWPEY{M(Oxidation (M))|F};[PS][SG]EPWE{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}WN{M(Oxidation (M))|F} 8.8837;6.8212;6.4594;6.3885;6.1553;5.658;5.658;5.5998;5.5239;5.4758 +;-;-;-;-;-;-;-;-;- + 5016 NaN NaN 608898.2 NaN 20248 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24927 98.471 NaN 199360 35 0 37058 0.261 + -1 LSSCTQKEVW 10 51 619.2982261540494 1236.5818993748987 2 619.2977905273438 MULTI HCD FTMS 0 0 0 24925 137703.046875 1 0 0 2 Carbamidomethyl (C) _LSSC(Carbamidomethyl (C))TQKEVW_ REV__ENSG00000166321|ENST00000357321|NUDT13;REV__ENST00000488223.5_1_10:74886420-74890658:+|nuORF;REV__nc|ENSG00000166321|Q86X67-2|NUDT13;REV__nc|ENSG00000166321|Q86X67-3|NUDT13 11.494710602746466 0.4035943721457025 2 VYY{[QN]|[E{I|L}]|[KN]}{[YC]|[HE]}VW 9 -1 + 63.918 0 0 5.1689 5.1689 90.436 0 0 0 35.20689673945462 8.46787486224656 8.46787486224656 24.252509456924827 0 1.805462187404089 2 0 0 VYY{[QN]|[E{I|L}]|[KN]}{[YC]|[HE]}VW;VYY{[QN]|[E{I|L}]|[KN]}[SG]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 5.1689;3.2077 -;- 78 + NaN NaN 130688 NaN 20249 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24928 98.475 NaN 201620 35 0 25122 0.261 + -1 YLLWPRSAM 9 67 576.7968118768224 NaN 0 576.8081665039062 PEAK HCD FTMS 0 0 0 24925 14777.1591796875 1 0 0 3 Oxidation (M) _YLLWPRSAM(Oxidation (M))_ REV__ENSG00000186265|ENST00000334529|BTLA 15.847184025352803 0.21527282152051216 2 PWSN{I|L}{I|L} 6 -1 38.167 0 0 3.3143 0 0 165.05807148763466 273.1235445611938 438.18161604882846 0 0 0 0 0 0.3252574989159953 0 0.3807196863200844 0.7742275032520141 PWSN{I|L}{I|L} 3.3143 - 157 + NaN NaN 123366.7 NaN 20250 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24929 98.478 NaN 63804 35 0 14951 0.261 -1 CFYSGAWYGG 10 33 584.2318285471005 1166.4491041610008 2 584.2322998046875 MULTI HCD FTMS 0 0 0 24925 48277.58203125 0.20189845030186113 16 -0.29439544677734375 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))FYSGAWYGG_ ENST00000512192.1_1_5:34914030-34914827:-|nuORF 0.45834013312273997 0.47287763746706196 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101883.1 NaN 20251 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24930 98.482 NaN 60451 35 0 9493.7 0.264 + 8881 HNVRRWGDHP 10 27 425.21467696873134 NaN 0 425.2152099609375 PEAK HCD FTMS 0 0 0 24925 57416.17578125 0.5424288240599551 -68 1.3026046752929688 5 Unmodified _HNVRRWGDHP_ ENST00000396634.5_1_6:29913329-29913413:+|nuORF 1.6526216038709556 0.33876987398426067 2 N 1 9 4.6041 0 0 0.54267 0 0 442.23891096695644 289.1054781549438 731.3443891219002 0 0 0 0 0 0 0 0 0 + N 0.54267 + + 1 + NaN NaN 85774.8 NaN 20252 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24931 98.485 NaN 245030 35 0 29010 0.261 -1 IYMCMCTQF 9 61 586.219895942757 NaN 0 586.2196655273438 PEAK HCD FTMS 0 0 0 24925 46831.375 0.8874811512173889 -3 0.02869415283203125 6 2 Oxidation (M) _IYM(Oxidation (M))CM(Oxidation (M))CTQF_ ENST00000552283.5_1_12:102467249-102467429:-|nuORF 7.910154910731844 0.25691533546754686 2 {I|L}{M(Oxidation (M))|F}SW 4 -1 21.938 0 0 1.8744 0 0 131.9093620543361 502.2364901178344 634.1458521721705 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}SW 1.8744 - 59 + NaN NaN 128469.4 NaN 20253 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24932 98.488 NaN 70030 35 0 5428.5 0.261 + 17579 LYVRRTIE 8 47 525.3099104966838 NaN 0 525.3101806640625 PEAK HCD FTMS 0 0 0 24925 26884 0.9076505082690866 -4 0.06139373779296875 7 Unmodified _LYVRRTIE_ REV__NMT1|p.H272Y|1|0.09|ENSG00000136448|chr17:45098482-45098482|C/T|missense_variant 2.8892196856762586 0.38822285293237185 2 A 1 -1 4.6041 0 0 0.43907 0 0 166.15129792021338 808.3936251275999 974.5449230478132 0 0 0 0 0 0 0 0 0 A 0.43907 - 2 + NaN NaN 100589 NaN 20254 4676 24925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24934 98.493 NaN 387650 35 0 23903 0.327 + -1 SLSSCSMELME 11 76 637.2597209240275 1272.504888914855 2 638.2628173828125 MULTI HCD FTMS 0 0 0 24933 172698.359375 0.6879507390523931 8 -0.14221954345703125 1 Carbamidomethyl (C) _SLSSC(Carbamidomethyl (C))SMELME_ REV__ENST00000449111.5_1_X:149108908-149110531:+|nuORF 11.494710602746466 0.35692862141139436 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{M(Oxidation (M))|F}SE{I|L}EE 10 -1 + 55.408 0 0 4.3543 4.3543 84.981 0 0 0 22.007002703907723 45.75992011847709 22.007002703907723 8.692803136799157 0 0.4584171445583688 1.6989700043360187 1.0189301784845295 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{M(Oxidation (M))|F}SE{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[CP]|[EA]}Y{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[EC]M{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}{[CA]|SS}[NG]{M(Oxidation (M))|F}{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{[WT]|[RM]}[NG]{M(Oxidation (M))|F}{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E{[QG]|[NA]}[YQ]EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}E[YG]QQEE;{[QN]|[E{I|L}]|[KN]}{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}SE{I|L}EE;{[YD]|[{M(Oxidation (M))|F}M]}{I|L}Y{[DA]|[EG]}QQEE;[{M(Oxidation (M))|F}E]{I|L}YD[YN][Y{M(Oxidation (M))|F}] 4.3543;3.6711;2.901;2.6218;2.1051;1.5532;1.5532;1.4072;1.3745;1.3313 -;-;-;-;-;-;-;-;-;- 813 NaN NaN 144194.8 NaN 20255 4677 24933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24935 98.498 NaN 130260 35 0 6938.4 0.263 + 23915 RTLFRGRRRRE 11 57 501.6343567671604 1501.8812409016812 3 501.6344909667969 MULTI HCD FTMS 0 0 0 24933 71929.7890625 0.7073720401358349 -2 0.03887176513671875 2 Unmodified _RTLFRGRRRRE_ ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4 0.09484139111097674 0.41850472438158626 2 D 1 11 9.6041 0 0 0.63947 0 0 61.05055337321193 1322.7529459162013 1383.8034992894131 0 0 0 0 0 0.5 0 0 0 D 0.63947 - 8 + NaN NaN 110464.1 NaN 20256 4677 24933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24936 98.501 NaN 59468 35 0 10356 0.261 + 20867 PIIIFLLNKK 10 39 599.8994740535444 NaN 0 599.8816528320312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PIIIFLLNKK_ REV__ENST00000455528.5_1_21:34931602-34931680:+|nuORF 0.45834013312273997 0.33979201340002624 2 M 1 -1 4.6041 0 0 0.38438 0 0 635.4395359701952 428.27957449337913 1063.7191104635742 0 0 0 0 0 0 0 0 0 M 0.38438 - 1 + NaN NaN 99877.3 NaN 20257 4677 24933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24938 98.506 NaN 329410 35 0 29176 0.327 -1 0 57 642.2651396244074 1282.5157263156148 2 642.76708984375 MULTI HCD FTMS 0 0 0 24937 34847.00390625 0.24974031671953836 6 -0.11997222900390625 1 NaN NaN 2 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[{M(Oxidation (M))|F}T]Y 8 -1 67.925 0 0 5.2962 0 0 0 162.05578547900828 162.05578547900828 51.15865011156764 0 0 0 0 2.4247425010840047 1.6989700043360187 0.7302046884880937 0 {[YD]|[{M(Oxidation (M))|F}M]}{I|L}EW[{M(Oxidation (M))|F}T]Y 5.2962 - 549 NaN NaN 152766 NaN 20258 4678 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24939 98.51 NaN 196030 35 0 11203 0.262 -1 MPSSVSWGIL 10 66 546.7735425717873 1091.5325322103745 2 546.7734985351562 MULTI HCD FTMS 0 0 0 24937 25829.443359375 0.3411631842831068 2 -0.0456085205078125 2 Oxidation (M) _M(Oxidation (M))PSSVSWGIL_ ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1 24.020572477871973 0.2864316864133941 2 {I|L}{I|L}{I|L} 3 -1 24.297 0 0 2.2259 0 0 734.2657337873062 0 734.2657337873062 0 1.622862392268793 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L}{I|L} 2.2259 - 67 NaN NaN 127180.1 NaN 20259 4678 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24940 98.514 NaN 178980 35 0 28582 0.261 + 6186 FPELLPLSEL 10 41 579.3261376582044 1156.6377223832087 2 579.325927734375 MULTI HCD FTMS 0 0 0 24937 13646.095703125 0.018186923879524468 -9 0.16510009765625 3 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 17.11289562659939 0.35104376501799556 2 SE{I|L} 3 7 33.258 0 0 2.8754 0 0 809.4688587873062 0 809.4688587873062 0 30.783409326844264 0 0 0 0.3252574989159953 0 0.3807196863200844 0 + SE{I|L} 2.8754 + + 8 NaN NaN 122096 NaN 20260 4678 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24941 98.517 NaN 83679 35 0 8574.9 0.261 + 6309 FPFPYLDTF 9 34 573.7778103023732 1145.5410676715462 2 573.7807006835938 MULTI HCD FTMS 0 0 0 24937 10967.6669921875 0.37883755951629217 1 -0.019500732421875 4 Unmodified _FPFPYLDTF_ ENSG00000049246|ENST00000377532|PER3;nc|ENSG00000049246|P56645|PER3 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}{I|L}DT{M(Oxidation (M))|F} 5 4 42.228 0 0 3.6863 0 0 504.23704726386876 0 504.23704726386876 0 33.64466613856731 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}DT{M(Oxidation (M))|F} 3.6863 - 76 NaN NaN 104147.4 NaN 20261 4678 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24942 98.521 NaN 151610 35 0 12642 0.261 + 13819 KYPSPFFVF 9 63 566.2974434430446 1130.580333952889 2 566.2989501953125 MULTI HCD FTMS 0 0 0 24937 21050.30078125 0.37068281208642023 -2 0.0390167236328125 5 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 27.628801355627647 0.12213550946336599 2 [YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 3 + 37.258 0 0 3.2955 3.2955 81.352 0 0 0 2.375729675490547 8.54664209894095 2.375729675490547 2.375729675490547 0 1.4247425010840047 0 0 0.28872548999643577 [YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.2955;3.0853 -;- 113 NaN NaN 120219 NaN 20262 4678 24937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24944 98.525 NaN 6824200 35 0 909170 0.326 + 11022 IYEPNFIFF 9 88 595.3009554234259 NaN 0 595.3007202148438 PEAK HCD FTMS 0 0 0 24943 5336566 0.4059811972132073 -8 0.14908599853515625 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 172.90653553480564 7.597711506241362E-27 2 EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6 3 67.891 0 0 5.7119 0 0 276.1471093107075 162.0585221769176 438.20563148762506 0 0 0 0 0 3.0924778212679485 0 1.2198565171985374 1.1747425010840047 + EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.7119 + + 732 NaN NaN 911102 NaN 20263 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24945 98.53 NaN 1905500 35 0 260950 0.261 + 32408 VYYPELFVW 9 110 608.3082264539318 1214.6018999746634 2 608.308349609375 MULTI HCD FTMS 0 0 0 24943 1269669.75 1 0 0 2 Unmodified _VYYPELFVW_ ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion 85.35673624503755 0.00464763827098139 2 [YV]YPE{I|L}{M(Oxidation (M))|F}VW 9 0 + 88.465 0 0 7.2835 7.2835 92.956 0 0 0 14.08501931674914 68.92954142737096 14.08501931674914 15 0 3.2302046884880937 1.154901959985743 0 0 + + [YV]YPE{I|L}{M(Oxidation (M))|F}VW;[YV]YPE{I|L}{M(Oxidation (M))|F}WV;{[CT]|[{M(Oxidation (M))|F}G]}V{M(Oxidation (M))|F}{I|L}EPY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};{[CT]|[{M(Oxidation (M))|F}G]}V{M(Oxidation (M))|F}{I|L}EP{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F}{I|L}EPY{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]YPE{I|L}W{M(Oxidation (M))|F}V;[{M(Oxidation (M))|F}V]G{M(Oxidation (M))|F}{I|L}EP{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]};[R{M(Oxidation (M))|F}]{M(Oxidation (M))|F}[WQ]{M(Oxidation (M))|F}VW;[EP]{I|L}{M(Oxidation (M))|F}VYYVW;[{M(Oxidation (M))|F}V]{I|L}[EP]YYVW 7.2835;6.0485;5.7968;5.4692;4.7546;4.7483;4.427;3.3267;2.2852;2.1496 +;-;-;-;-;-;-;-;-;- + 5976 NaN NaN 394799.2 NaN 20264 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24946 98.533 NaN 329900 35 0 82317 0.261 + -1 PECLEMYEPF 10 60 637.2597209240275 1272.504888914855 2 637.2554931640625 MULTI HCD FTMS 0 0 0 24943 126590.90625 0.41301723771414345 10 -0.174468994140625 3 Oxidation (M) _PECLEM(Oxidation (M))YEPF_ REV__ENSG00000158402|ENST00000323760|CDC25C;REV__nc|ENSG00000158402|P30307-2|CDC25C;REV__nc|ENSG00000158402|P30307-3|CDC25C;REV__nc|ENSG00000158402|P30307-4|CDC25C 13.042465956692817 0.38911719078024076 2 E[EP]{M(Oxidation (M))|F} 4 -1 20.802 0 0 1.6347 0 0 752.2804029684634 0 752.2804029684634 0 12.307131330965717 0 0 0 0.3807196863200844 0 0.3807196863200844 0 E[EP]{M(Oxidation (M))|F} 1.6347 - 39 NaN NaN 146198.3 NaN 20265 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24947 98.537 NaN 633040 35 0 176060 0.261 -1 TYPCHYCNK 9 67 621.755514951452 1241.496476969704 2 621.7555541992188 MULTI HCD FTMS 0 0 0 24943 201025.265625 0.3583791631828627 -8 0.14908599853515625 4 2 Carbamidomethyl (C) _TYPC(Carbamidomethyl (C))HYC(Carbamidomethyl (C))NK_ ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 8 -1 39.914 0 0 3.215 0 0 0 346.00406411014495 346.00406411014495 11.594246108985615 0 0 0 0 0.25 1.6989700043360187 0.7059771852360797 0 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 3.215 - 335 NaN NaN 202835.8 NaN 20266 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24948 98.54 NaN 216600 35 0 27339 0.261 + 33769 YLFNKDIFF 9 38 603.8135351090433 1205.6125172848865 2 603.8138427734375 MULTI HCD FTMS 0 0 0 24943 87150.2734375 0.4104509161822062 -7 0.11991119384765625 5 Unmodified _YLFNKDIFF_ REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1 9.347437153973935 0.2795965555214564 2 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 -1 36.348 0 0 3.0149 0 0 0 179.08298949400674 179.08298949400674 18.16061246681059 0 0 0 0 0 1.5228787452803376 0 0.3494850021680094 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.0149 - 41 NaN NaN 119972.2 NaN 20267 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24949 98.543 NaN 89742 35 0 8519.9 0.261 + 17152 LYLPSFFTY 9 38 575.7934238445727 1149.5722947559452 2 575.7958374023438 MULTI HCD FTMS 0 0 0 24943 20905.638671875 0.4879325251273909 4 -0.0745849609375 6 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 26.88365393820708 0.12808753336095696 2 [Y{I|L}]{I|L}C 4 6 29.922 0 0 2.6028 0 0 0 654.3161966936983 654.3161966936983 17.245462655597095 0 0 0 0 0.5 1.5228787452803376 0 0 [Y{I|L}]{I|L}C 2.6028 - 31 NaN NaN 101893.6 NaN 20268 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24950 98.547 NaN 63550 35 0 7389.5 0.261 -1 KMNGHLRLL 9 38 549.3157517437311 1096.616950554262 2 549.3153686523438 MULTI HCD FTMS 0 0 0 24943 32174.912109375 0.5242422944420796 4 -0.0745849609375 7 Oxidation (M) _KM(Oxidation (M))NGHLRLL_ ENSG00000158987|ENST00000509018|RAPGEF6;ENST00000514179.5_1_5:130808426-130834192:-|nuORF;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 25.969 0 0 2.3681 0 0 852.4365261253852 0 852.4365261253852 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.3681 + + 2 NaN NaN 106326.3 NaN 20269 4679 24943 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24952 98.552 NaN 121600 35 0 7920.1 0.327 -1 0 57 582.3533343798229 1162.6921158264456 2 582.3535766601562 MULTI HCD FTMS 0 0 0 24951 124761.453125 0.4006589492037785 8 -0.11612701416015625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 10.797 0 0 0.92861 0 0 663.4385890703894 349.1855562799438 1012.6241453503333 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 0.92861 - 9 + NaN NaN 112533.7 NaN 20270 4680 24951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24953 98.556 NaN 93722 35 0 5033 0.261 + 36 AALPLLRDRR 10 52 590.8667931935477 1179.7190334538952 2 590.8671875 MULTI HCD FTMS 0 0 0 24951 72052.390625 0.2965820363123429 10 -0.1611480712890625 2 Unmodified _AALPLLRDRR_ ENST00000495794.5_1_5:864585-881375:-|nuORF 1.4819007175156935 0.4674597685733628 2 D{M(Oxidation (M))|F} 2 9 7.0783 0 0 0.6 0 0 414.3504554283077 500.2512606256469 914.6017160539546 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 0.6 - 6 + NaN NaN 116979 NaN 20271 4680 24951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24954 98.56 NaN 229580 35 0 41811 0.264 + 31103 VTILIGDF 8 45 439.2546896129119 876.4948262926238 2 439.25469970703125 MULTI HCD FTMS 0 0 0 24951 83803.0625 1 0 0 3 Unmodified _VTILIGDF_ ENSG00000165091|ENST00000297784|TMC1 5.760428011301431 0.5334459684533844 2 NA{M(Oxidation (M))|F} 3 7 14.252 0 0 1.626 0 0 526.3255585697707 0 526.3255585697707 0 9.6479633912994 0 0 0 0 0 0 0 NA{M(Oxidation (M))|F} 1.626 - 35 + NaN NaN 131605.9 NaN 20272 4680 24951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24955 98.563 NaN 304800 35 0 47672 0.261 + -1 LYCFCIFVF 9 47 404.5254334902638 1210.5544710709914 3 404.52532958984375 MULTI HCD FTMS 0 0 0 24951 67935.03125 0.6364000229803207 -9 0.17519378662109375 4 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))FCIFVF_ REV__ENSG00000203933|ENST00000370540|CXorf66 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F} 1 -1 20.485 0 0 1.6922 0 0 1045.475703226068 0 1045.475703226068 0 16.505149978319906 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 1.6922 + + 15 + NaN NaN 131650.4 NaN 20273 4680 24951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24956 98.566 NaN 149580 35 0 28971 0.261 + 15920 LPMFELVEL 9 37 545.796490461536 1089.578427989872 2 545.7959594726562 MULTI HCD FTMS 0 0 0 24951 70695.6953125 0.8014259796469547 -5 0.09732818603515625 5 Unmodified _LPMFELVEL_ ENSG00000168397|ENST00000404914|ATG4B;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;nc|ENSG00000168397|Q9Y4P1-6|ATG4B 24.020572477871973 0.15282392193088168 2 {I|L}VE{I|L} 4 5 44.24 0 0 4.0603 0 0 617.2884388654312 0 617.2884388654312 0 38.75569708000178 0 0 0 1.2302046884880937 0 0 0 + {I|L}VE{I|L} 4.0603 + + 60 NaN NaN 121021.6 NaN 20274 4680 24951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24957 98.57 NaN 54915 35 0 6733.4 0.261 + -1 HKMAVNRLL 9 29 549.3157517437311 1096.616950554262 2 549.3170166015625 MULTI HCD FTMS 0 0 0 24951 31839.822265625 0.5187825042821385 5 -0.08376312255859375 6 Oxidation (M) _HKM(Oxidation (M))AVNRLL_ REV__ENSG00000133424|ENST00000397394|LARGE1;REV__nc|ENSG00000133424|O95461-2|LARGE1 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 -1 25.969 0 0 2.3681 0 0 852.4344741796624 0 852.4344741796624 0 23.494850021680094 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.3681 + + 5 NaN NaN 94330.9 NaN 20275 4680 24951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24959 98.574 NaN 332880 35 0 85163 0.327 + 4886 FAFPDEFVF 9 40 559.7632013013268 1117.5118496694536 2 559.763671875 MULTI HCD FTMS 0 0 0 24958 186172.703125 0.2944825316161367 6 -0.086273193359375 1 Unmodified _FAFPDEFVF_ ENSG00000123159|ENST00000393033|GIPC1;ENSG00000137960|ENST00000370759|GIPC2;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1 50.855029805455786 0.030374663808198754 2 TV{M(Oxidation (M))|F} 3 7 41.995 0 0 3.7579 0 0 752.3361405093931 0 752.3361405093931 0 34.5205343810445 0 0 0 1.3494850021680094 0 0.3807196863200844 0 TV{M(Oxidation (M))|F} 3.7579 - 36 NaN NaN 153511.5 NaN 20276 4681 24958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24960 98.579 NaN 733310 35 0 198400 0.264 + -1 YIYDAYLCF 9 94 409.8513229189605 1226.5321393570814 3 409.8512878417969 MULTI HCD FTMS 0 0 0 24958 279275.125 0.7234131147790461 -6 0.12020111083984375 2 Carbamidomethyl (C) _YIYDAYLC(Carbamidomethyl (C))F_ REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|0|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|5 8.745405648335112 0.2847203663274469 2 {I|L}Y 2 -1 43.271 0 0 3.5279 0 0 0 947.3611856107499 947.3611856107499 19.089934634871284 0 0 0 0 0.3807196863200844 2 0 0 {I|L}Y 3.5279 + + 31 + NaN NaN 209912.1 NaN 20277 4681 24958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24961 98.582 NaN 478690 35 0 54593 0.261 + 11369 IYNNWLFDE 9 59 405.1880094412604 1212.5421989239812 3 405.1876220703125 MULTI HCD FTMS 0 0 0 24958 66000.0703125 0.603906386603472 -7 0.1292724609375 3 Unmodified _IYNNWLFDE_ REV__ENSG00000146530|ENST00000275358|VWDE 7.608950283845883 0.29333554423920943 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 29.024 0 0 2.3936 0 0 900.3953641003596 0 900.3953641003596 0 7.597046968434142 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3936 - 32 + NaN NaN 164573.7 NaN 20278 4681 24958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24962 98.586 NaN 106600 35 0 10840 0.261 -1 VNSCARCF 8 46 507.22071075662103 NaN 0 506.77923583984375 PEAK HCD FTMS 0 0 0 24958 8485.92578125 0.414707633005764 -1 0.0228729248046875 4 2 Carbamidomethyl (C) _VNSC(Carbamidomethyl (C))ARC(Carbamidomethyl (C))F_ ENSG00000120949|ENST00000263932|TNFRSF8;nc|ENSG00000120949|P28908-3|TNFRSF8 5.760428011301431 0.38822285293237185 2 {I|L} 1 -1 6.9897 0 0 0.69039 0 0 214.9961190734304 681.3223971002561 896.3185161736865 0 0 0 0 0 0 0 0 0 {I|L} 0.69039 - 7 + NaN NaN 109211.5 NaN 20279 4681 24958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24964 98.591 NaN 1296100 35 0 217690 0.327 + -1 YIPDMKQPGF 10 78 606.2923400182235 1210.570127103247 2 606.2918701171875 MULTI HCD FTMS 0 0 0 24963 872104.3125 0.5599995071694801 -5 0.09745025634765625 1 Oxidation (M) _YIPDM(Oxidation (M))KQPGF_ REV__ENSG00000163629|ENST00000411767|PTPN13;REV__nc|ENSG00000163629|Q12923-2|PTPN13;REV__nc|ENSG00000163629|Q12923-3|PTPN13;REV__nc|ENSG00000163629|Q12923-4|PTPN13 27.628801355627647 0.2527626205058048 2 {I|L}YEPNG[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 10 -1 + 66.872 0 0 5.524 5.524 85.983 0 0 0 11.748650278674049 1.8791654952092784 1.8791654952092784 6.875758612822054 0 1.9419628234359578 2 0.3807196863200844 0 {I|L}YEPNG[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{I|L}YEPNG{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}P{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{[QG]|[NA]}P{M(Oxidation (M))|F};[Y{I|L}]EPN{M(Oxidation (M))|F}{I|L}[C(Carbamidomethyl (C))R];[Y{I|L}]EPN[C(Carbamidomethyl (C))R]{I|L}{M(Oxidation (M))|F};YYT[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};YYT[NP]{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[NP]T[NP]D{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}PN{M(Oxidation (M))|F}{[QG]|[NA]}P{M(Oxidation (M))|F};[Y{I|L}][NG][C(Carbamidomethyl (C))R]{I|L}[C(Carbamidomethyl (C))R] 5.524;4.956;4.8753;4.3626;3.9082;3.7469;2.7786;2.7192;2.416;2.113 -;-;-;-;-;-;-;-;-;- 435 + NaN NaN 290695.7 NaN 20280 4682 24963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24965 98.595 NaN 280450 35 0 13147 0.262 + 13950 KYRILLFFWSL 11 77 495.9587413998472 1484.8543947997416 3 495.9586486816406 MULTI HCD FTMS 0 0 0 24963 149021.015625 0.6196238836518766 26 -0.4062957763671875 2 Unmodified _KYRILLFFWSL_ REV__ENSG00000196376|ENST00000360388|SLC35F1;REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant 0.4545168274142398 0.41692731010159206 2 V{M(Oxidation (M))|F} 2 -1 16.555 0 0 1.1149 0 0 1220.7088087175134 0 1220.7088087175134 0 5.585456211725205 0 0 0 0.4247425010840047 0 0 0 V{M(Oxidation (M))|F} 1.1149 - 57 + NaN NaN 139733.8 NaN 20281 4682 24963 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24967 98.6 NaN 188120 35 0 30245 0.327 + 5465 FIPMWCLFF 9 49 602.2897552417202 1202.5649575502403 2 602.2893676757812 MULTI HCD FTMS 0 0 0 24966 58871.93359375 0.3684389539269884 -4 0.0745849609375 1 Unmodified _FIPMWCLFF_ REV__ENSG00000163394|ENST00000295589|CCKAR 20.871210003555333 0.18003371494288972 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 35.445 0 0 2.9475 0 0 777.3319590813502 0 777.3319590813502 0 24.960762528683702 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9475 + + 57 NaN NaN 110771.3 NaN 20282 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24968 98.604 NaN 338970 35 0 43472 0.261 + 31751 VYLLTFPPL 9 53 531.8154041025418 NaN 0 531.8153686523438 PEAK HCD FTMS 0 0 0 24966 49212.40234375 0.11291002469929616 -7 0.1331024169921875 2 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 77.98433622928108 0.0036487741833262305 2 {I|L}{I|L}T{M(Oxidation (M))|F}P 5 4 55.349 0 0 5.2137 0 0 262.13109023261876 225.12385960221482 487.2549498348336 0 0 0 0 0 2.774227503252014 0 0.805462187404089 0 + {I|L}{I|L}T{M(Oxidation (M))|F}P 5.2137 + + 154 NaN NaN 144974.5 NaN 20283 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24969 98.608 NaN 101120 35 0 16529 0.261 + 28110 TIHFPTDYPF 10 36 619.2982261540494 1236.5818993748987 2 619.2989501953125 MULTI HCD FTMS 0 0 0 24966 41762.9453125 0.3032826524921437 7 -0.1126708984375 3 Unmodified _TIHFPTDYPF_ ENSG00000078967|ENST00000222402|UBE2D4;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000131508|ENST00000398733|UBE2D2;ENST00000440899.5_1_7:43978041-43988321:+|nuORF;ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;nc|ENSG00000131508|P62837-2|UBE2D2 6.723162845929126 0.4397169348982109 2 [YV]Y 3 9 39.705 0 0 3.2109 0 0 0 808.3628202129662 808.3628202129662 20.24104976468614 0 0 0 0 0.9247425010840047 2 0 0 [YV]Y 3.2109 - 16 + NaN NaN 102665.7 NaN 20284 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24970 98.611 NaN 79041 35 0 8823.5 0.261 -1 NMVEDCLYET 10 41 645.2555943194893 1288.4966357057785 2 644.382568359375 MULTI HCD FTMS 0 0 0 24966 16137.8359375 0.3864134067845232 9 -0.16129302978515625 4 Carbamidomethyl (C),Oxidation (M) _NM(Oxidation (M))VEDC(Carbamidomethyl (C))LYET_ ENSG00000076641|ENST00000220597|PAG1 1.6526216038709556 0.46655611578153744 2 TEYH{I|L} 5 -1 17.423 0 0 1.3522 0 0 132.84327613111628 509.33350549869374 642.17678162981 0 0 0 0 0 0 0 0 0 TEYH{I|L} 1.3522 - 19 + NaN NaN 97786.7 NaN 20285 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24971 98.614 NaN 93365 35 0 6729 0.261 + 14298 LDEYYLVFW 9 38 624.3023350455884 1246.5901171579767 2 624.3020629882812 MULTI HCD FTMS 0 0 0 24966 37088.359375 0.526186982915391 4 -0.0606689453125 5 Unmodified _LDEYYLVFW_ REV__ENSG00000147155|ENST00000495186|EBP 7.910154910731844 0.2910521888787154 2 {M(Oxidation (M))|F}VW 3 -1 30.49 0 0 2.4458 0 0 796.3630238263687 0 796.3630238263687 0 20.568109453757657 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F}VW 2.4458 - 15 NaN NaN 104563.9 NaN 20286 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24972 98.618 NaN 141280 35 0 9810.2 0.261 + 13680 KYPENFFLL 9 61 585.813516312158 NaN 0 585.8135986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 E{I|L}M{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 6 6 15.724 0 0 1.3443 0 0 162.1052297905283 241.15564905338127 403.2608788439096 0 0 0 0 0 1.2614393726401687 0 0 0 E{I|L}M{[QD]|[EN]|[WG]|[KD]|[RS]}{M(Oxidation (M))|F} 1.3443 - 145 + NaN NaN 110821.7 NaN 20287 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24973 98.621 NaN 37700 35 0 4958.8 0.261 -1 PRGVFMMC 8 28 507.22071075662103 NaN 0 507.22039794921875 PEAK HCD FTMS 0 0 0 24966 18871.462890625 0.922249370129937 1 -0.02588653564453125 7 Carbamidomethyl (C),Oxidation (M) _PRGVFM(Oxidation (M))MC(Carbamidomethyl (C))_ ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102195.2 NaN 20288 4683 24966 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24975 98.626 NaN 298850 35 0 30923 0.327 + -1 LCYYVCMFF 9 63 415.8416358727812 1244.5030782185436 3 416.1763000488281 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))YYVCMFF_ REV__ENSG00000260903|ENST00000562532|XKR7 9.38312468134398 0.279288223203164 2 {I|L}Y 2 -1 39.464 0 0 3.1711 0 0 0 965.3260836975464 965.3260836975464 8.02378753635658 0 0 0 0 0 2 0 0 {I|L}Y 3.1711 - 16 + NaN NaN 134232 NaN 20289 4684 24974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24976 98.63 NaN 120030 35 0 7390.9 0.261 + 12471 KQRRLERRREF 11 62 525.3098725784537 1572.9077883355608 3 525.6433715820312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KQRRLERRREF_ REV__ENSG00000122786|ENST00000361675|CALD1;REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF;REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF;REV__nc|ENSG00000122786|Q05682-2|CALD1;REV__nc|ENSG00000122786|Q05682-4|CALD1;REV__nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.92848 0 0 1407.829203596106 0 1407.829203596106 0 3.36696871556164 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.92848 + + 10 + NaN NaN 117815.2 NaN 20290 4684 24974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24978 98.635 NaN 375130 35 0 81887 0.327 + 6187 FPELLPLSEL 10 50 579.3261376582044 1156.6377223832087 2 579.3265991210938 MULTI HCD FTMS 0 0 0 24977 110690.71875 0.14752378408243833 -2 0.03528594970703125 1 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 53.832793166522166 0.06385051108671999 2 {I|L}[{I|L}P]SE{I|L} 6 4 49.046 0 0 4.2404 0 0 486.24815566230626 0 486.24815566230626 0 42.47908635784347 0 0 0 1.6382104921644451 0 0.4247425010840047 0 + {I|L}[{I|L}P]SE{I|L} 4.2404 + + 63 NaN NaN 145640.1 NaN 20291 4685 24977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24979 98.64 NaN 101050 35 0 7628.4 0.263 + 1638 CAQRTESS 8 52 441.19111584996494 NaN 0 440.7991027832031 PEAK HCD FTMS 0 0 0 24977 20229.927734375 0.5242674282835821 4 -0.06459808349609375 2 Unmodified _CAQRTESS_ ENST00000586107.1_1_19:19380531-19384159:-|nuORF 5.230669730166228 0.38822285293237185 2 {I|L} 1 8 2.4743 0 0 0.28105 0 0 155.08509927629865 609.1798800104124 764.264979286711 0 0 0 0 0 0 0 0 0 {I|L} 0.28105 - 1 + NaN NaN 94835.4 NaN 20292 4685 24977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24981 98.645 NaN 14010000 35 0 1954400 0.327 + 11023 IYEPNFIFF 9 95 595.3009554234259 NaN 0 595.3012084960938 PEAK HCD FTMS 0 0 0 24980 5521457 0.4200468472087188 -1 0.00946807861328125 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 158.20266083822983 1.294455961090967E-19 2 EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 6 3 68.769 0 0 5.7858 0 0 276.14711881012045 162.0586656431614 438.2057844532818 0 0 0 0 0 3.1677353201839438 0 1.23239816956497 1.1747425010840047 + EPN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5.7858 + + 1920 NaN NaN 1418371.1 NaN 20293 4686 24980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24982 98.649 NaN 146920 35 0 25057 0.261 + -1 ALMHMCEMIF 10 48 637.2597209240275 1272.504888914855 2 638.2636108398438 MULTI HCD FTMS 0 0 0 24980 49081.12109375 0.1955165854045353 17 -0.3083953857421875 2 3 Oxidation (M) _ALM(Oxidation (M))HM(Oxidation (M))CEM(Oxidation (M))IF_ REV__chr4:138214629-138219266|442|23.05|0.99|4.55|-|2|SLC7A11,SLC7A11|1 1.6526216038709556 0.46655611578153744 2 W 1 -1 3.9794 0 0 0.31272 0 0 518.2108348150488 565.1952608697874 1083.4060956848361 0 0 0 0 0 0 0 0 0 W 0.31272 - 13 + NaN NaN 102570.8 NaN 20294 4686 24980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24983 98.652 NaN 112740 35 0 9869.1 0.261 + 13820 KYPSPFFVF 9 37 566.2974434430446 1130.580333952889 2 566.2980346679688 MULTI HCD FTMS 0 0 0 24980 30782.341796875 0.5420580512576126 5 -0.07745361328125 3 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 2 V{M(Oxidation (M))|F} 2 7 29.464 0 0 2.6061 0 0 866.4315156796754 0 866.4315156796754 0 19.006375246153908 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.6061 + + 43 NaN NaN 116208.9 NaN 20295 4686 24980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24984 98.656 NaN 518740 35 0 129720 0.261 -1 YLVLCDNK 8 53 512.7606047160338 1023.5066564988675 2 512.7606811523438 MULTI HCD FTMS 0 0 0 24980 36164.046875 0.497810289782926 4 -0.0679168701171875 4 Carbamidomethyl (C) _YLVLC(Carbamidomethyl (C))DNK_ ENSG00000163428|ENST00000295628|LRRC58 21.74664581756881 0.4337896562907935 2 Y{I|L}E{M(Oxidation (M))|F} 4 -1 53.493 0 0 5.2264 0 0 0 468.2235506647094 468.2235506647094 28.716459608685483 0 0 0 0 1.305462187404089 1.5228787452803376 0.3807196863200844 0 Y{I|L}E{M(Oxidation (M))|F} 5.2264 - 169 + NaN NaN 168207.8 NaN 20296 4686 24980 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24987 98.667 NaN 693750 35 0 219300 0.327 -1 YLNQCCHFT 9 68 621.755514951452 1241.496476969704 2 621.755615234375 MULTI HCD FTMS 0 0 0 24986 258841.359375 0.46145119859197864 1 -0.03223419189453125 1 2 Carbamidomethyl (C) _YLNQC(Carbamidomethyl (C))C(Carbamidomethyl (C))HFT_ CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 3.944395688203298 0.32111559684428237 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 23.188 0 0 1.8677 0 0 816.2658255650268 0 816.2658255650268 0 2.769250191953674 0 0 0 0.8494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8677 - 183 NaN NaN 199566.8 NaN 20297 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24988 98.672 NaN 445360 35 0 54102 0.261 + 33770 YLFNKDIFF 9 45 603.8135351090433 1205.6125172848865 2 603.8134155273438 MULTI HCD FTMS 0 0 0 24986 85199.484375 0.4012633011994996 1 -0.03223419189453125 2 Unmodified _YLFNKDIFF_ REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1 9.347437153973935 0.2795965555214564 2 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 8 -1 26.833 0 0 2.2257 0 0 0 179.08399245303227 179.08399245303227 12.140012553530966 0 0 0 0 0 1.3979400086720375 0 0 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 2.2257 - 103 NaN NaN 151778.2 NaN 20298 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24989 98.675 NaN 94093 35 0 9994.3 0.261 + 18043 MLRKFIIFL 9 50 590.8667931935477 1179.7190334538952 2 590.8200073242188 MULTI HCD FTMS 0 0 0 24986 19413.91015625 0.0799115332188258 18 -0.30924224853515625 3 Unmodified _MLRKFIIFL_ ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B 0.6014990680409731 0.3464572424761564 2 PE{I|L}C 4 8 16.938 0 0 1.4358 0 0 148.16765663746588 586.3341158502561 734.5017724877221 0 0 0 0 0 0 0 0 0 PE{I|L}C 1.4358 - 25 + NaN NaN 113606.6 NaN 20299 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24990 98.678 NaN 127250 35 0 19206 0.261 -1 CTQRFCIQDC 10 47 637.2597209240275 1272.504888914855 2 638.26171875 MULTI HCD FTMS 0 0 0 24986 26943.4453125 0.10733027912038966 19 -0.3219146728515625 4 Carbamidomethyl (C) _CTQRFCIQDC(Carbamidomethyl (C))_ ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.F129Pfs*30|1|0.08|ENSG00000042781|chr1:216421952-216421953|-/CCGG|frameshift_variant;USH2A|p.F344Lfs*26|1|0.3|ENSG00000042781|chr1:216325416-216325416|A/-|frameshift_variant;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant 3.5964929083625545 0.45626689593999237 2 A 1 -1 5.4846 0 0 0.431 0 0 180.97454904458465 1017.4948321922058 1198.4693812367905 0 0 0 0 0 0 0 0 0 A 0.431 - 7 + NaN NaN 113459.3 NaN 20300 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24991 98.682 NaN 76063 35 0 10505 0.262 + 8212 GRDRGRNAF 9 37 524.7730102539062 NaN 0 524.7730102539062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _GRDRGRNAF_ ENST00000353047.10_1_8:11702534-11702627:-|nuORF 10.073929032068715 0.24642998803896465 2 CA 2 8 19.464 0 0 1.8581 0 0 708.4140287091813 162.05562769107658 870.4696564002578 0 0 0 0 0 1 0 0 0 CA 1.8581 - 7 + NaN NaN 101362.1 NaN 20301 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24992 98.685 NaN 131990 35 0 22719 0.261 + 7325 FVAEFSVPLL 10 44 561.3159554901032 1120.6173580470063 2 561.3175048828125 MULTI HCD FTMS 0 0 0 24986 19548.826171875 0.3699276953720337 1 -0.03223419189453125 6 Unmodified _FVAEFSVPLL_ ENSG00000169777|ENST00000382492|TAS2R1 13.90604991867851 0.3810395177745597 2 V{M(Oxidation (M))|F}TDW{I|L} 6 7 27.044 0 0 2.4133 0 0 341.23120977509154 0 341.23120977509154 0 11.559640787890544 0 0 0 1.242992819099939 0 0 0 V{M(Oxidation (M))|F}TDW{I|L} 2.4133 - 49 NaN NaN 115918.4 NaN 20302 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24993 98.688 NaN 75412 35 0 7364.3 0.261 + 17153 LYLPSFFTY 9 32 575.7935210310974 1149.5724891289947 2 575.7943725585938 MULTI HCD FTMS 0 0 0 24986 9487.4267578125 0.16659263978323036 -7 0.09325408935546875 7 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 11.640296217721598 0.25978676193971967 2 [Y{I|L}]{I|L} 3 6 13.072 0 0 1.1371 0 0 0 757.3176422874509 757.3176422874509 3.3399935561281087 0 0 0 0 0.5 0 0 0 + [Y{I|L}]{I|L} 1.1371 + + 14 NaN NaN 104881 NaN 20303 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24994 98.692 NaN 68486 35 0 8663.6 0.261 -1 MMPEEIELEM 10 40 642.2652587890625 NaN 0 642.2652587890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))PEEIELEM_ ENSG00000166780|ENST00000300006|BMERB1;ENST00000567550.1_1_16:15528510-15675189:+|nuORF;nc|ENSG00000166780|Q96MC5-2|BMERB1 8.745405648335112 0.33269943387702366 2 WE{I|L} 3 -1 27.435 0 0 2.1392 0 0 576.220345017775 275.0671785943969 851.287523612172 0 0 0 0 0 1.4247425010840047 0 0 0 WE{I|L} 2.1392 - 37 + NaN NaN 100897.6 NaN 20304 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24995 98.695 NaN 231620 35 0 56029 0.263 -1 MMFCDMCD 8 51 522.1358911440045 NaN 0 521.7428588867188 PEAK HCD FTMS 0 0 0 24986 25107.62109375 0.513544647588924 4 -0.0936431884765625 9 3 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))FCDM(Oxidation (M))CD_ ENSG00000130024|ENST00000339209|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;nc|ENSG00000130024|Q8WUB8-3|PHF10 0 0.38822285293237185 2 {I|L} 1 -1 3.0989 0 0 0.29733 0 0 651.0831649090013 275.06659876041255 926.1497636694139 0 0 0 0 0 0 0 0 0 {I|L} 0.29733 - 3 + NaN NaN 116723.8 NaN 20305 4688 24986 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24997 98.7 NaN 181510 35 0 43043 0.327 + 34563 YPLIIYDVF 9 40 571.81036379696 1141.60617466072 2 571.8104858398438 MULTI HCD FTMS 0 0 0 24996 28611.794921875 0.10141240271241665 -1 0.03223419189453125 1 Unmodified _YPLIIYDVF_ ENSG00000106049|ENST00000265395|HIBADH;ENST00000496814.1_1_7:27689076-27702407:-|nuORF 23.1484247019978 0.1603590852062899 2 YDV{M(Oxidation (M))|F} 4 5 41.186 0 0 3.6077 0 0 599.366913233838 0 599.366913233838 0 30.21652514092061 0 0 0 0.9247425010840047 0 0 0 + YDV{M(Oxidation (M))|F} 3.6077 + + 10 NaN NaN 113302.6 NaN 20306 4689 24996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24998 98.704 NaN 65300 35 0 10219 0.261 + 28117 TIIKKIKLLK 10 34 599.4364941094553 NaN 0 599.3006591796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TIIKKIKLLK_ tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 0 0.34018428902965525 2 M 1 10 0.48455 0 0 0.040485 0 0 634.4885755218419 428.31012903385005 1062.798704555692 0 0 0 0 0 0 0 0 0 M 0.040485 - 1 + NaN NaN 104230.9 NaN 20307 4689 24996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 24999 98.708 NaN 50321 35 0 4365.4 0.261 -1 0 38 582.3533343798229 1162.6921158264456 2 582.3532104492188 MULTI HCD FTMS 0 0 0 24996 31087.728515625 0.09983513599928386 17 -0.277008056640625 3 NaN NaN 2 {I|L}{I|L} 2 -1 7.9588 0 0 0.68451 0 0 259.2192897539831 674.2808931940061 933.5001829479893 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.68451 - 5 + NaN NaN 102739.2 NaN 20308 4689 24996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25001 98.713 NaN 929930 35 0 152350 0.327 + 10060 IFEEDKHFF 9 64 606.2923400182235 1210.570127103247 2 606.2916259765625 MULTI HCD FTMS 0 0 0 25000 981280.5625 0.6301042473001075 3 -0.05571746826171875 1 Unmodified _IFEEDKHFF_ SLC8A3|p.E478K|1|0.14|ENSG00000100678|chr14:70166991-70166991|C/T|missense_variant 32.30548876998284 0.10066689432505688 2 [Y{I|L}]T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 6 + 72.157 0 0 5.9606 5.9606 91.944 0 0 0 12.904849854573683 28.964687239169606 12.904849854573683 26.53212513775344 0 1.774227503252014 2 0.3807196863200844 0.6505149978319906 [Y{I|L}]T{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}[C(Carbamidomethyl (C))R];[Y{I|L}][NG][C(Carbamidomethyl (C))R]{I|L}[C(Carbamidomethyl (C))R];{[CP]|[EA]}{[QV]|[N{I|L}]|[RA]|[KV]}[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]{I|L}[NP]{M(Oxidation (M))|F}{I|L}[C(Carbamidomethyl (C))R] 5.9606;3.7689;1.7411;1.6249;1.3096 -;-;-;-;- 217 NaN NaN 254814.5 NaN 20309 4690 25000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25002 98.717 NaN 103450 35 0 11747 0.262 + 23412 RLKHEHIERRR 11 52 510.6342607216871 1528.8809527652613 3 510.63397216796875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RLKHEHIERRR_ ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35 0 0.41892066650488113 2 S 1 11 4.6041 0 0 0.30114 0 0 1221.7173002767831 217.10732446842033 1438.8246247452034 0 0 0 0 0 0 0 0 0 S 0.30114 - 6 + NaN NaN 105646.5 NaN 20310 4690 25000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25004 98.722 NaN 509210 35 0 94548 0.327 + 31745 VYLLTFPPL 9 52 531.8152610589307 1061.6159691846613 2 531.8154296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 101.62 0 0 9.5724 9.5724 96.327 0 0 0 19.621892823592972 91.44524706148886 19.621892823592972 16.505149978319906 0 2.774227503252014 1.3979400086720375 1.1307196863200843 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L} 9.5724;8.0177;7.6591;5.9877 +;-;-;- + 309 NaN NaN 168335.1 NaN 20311 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25005 98.726 NaN 257900 35 0 65599 0.263 -1 LYFYFEAQM 9 60 409.8513229189605 1226.5321393570814 3 409.8512878417969 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _LYFYFEAQM(Oxidation (M))_ ENST00000347635.8_1_22:45580993-45581113:+|nuORF 7.101721422024254 0.29718071671418667 2 {I|L}Y 2 -1 43.271 0 0 3.5279 0 0 0 947.3564815062937 947.3564815062937 19.089934634871284 0 0 0 0 0.3807196863200844 2 0 0 {I|L}Y 3.5279 + + 18 + NaN NaN 142731.6 NaN 20312 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25006 98.73 NaN 261090 35 0 71578 0.261 + 34564 YPLIIYDVF 9 41 571.81036379696 1141.60617466072 2 571.8103637695312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YPLIIYDVF_ ENSG00000106049|ENST00000265395|HIBADH;ENST00000496814.1_1_7:27689076-27702407:-|nuORF 34.10243960390752 0.09241788333544565 2 PYDV{M(Oxidation (M))|F} 5 4 50.433 0 0 4.4177 0 0 502.31568557859333 0 502.31568557859333 0 50.43305028184122 0 0 0 2 0 0 0 PYDV{M(Oxidation (M))|F} 4.4177 - 30 + NaN NaN 128065.7 NaN 20313 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25007 98.733 NaN 58895 35 0 7863.4 0.261 + 4939 FAPAEYGPLF 10 38 556.2776325455607 1110.5407121579212 2 556.2781372070312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _FAPAEYGPLF_ REV__ENSG00000158104|ENST00000289004|HPD;REV__HPD|p.P339Tfs*42|1|0.14|ENSG00000158104|chr12:121839988-121839989|-/T|frameshift_variant;REV__nc|ENSG00000158104|P32754-2|HPD;REV__nc|ENSG00000158104|P32754|HPD 10.823927491677226 0.4098686510432541 2 W{I|L}{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.6419 0 0 646.2998644088873 0 646.2998644088873 0 40.44531259372398 0 0 0 1.4247425010840047 0 0 0 W{I|L}{M(Oxidation (M))|F} 3.6419 - 19 NaN NaN 119832.5 NaN 20314 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25008 98.736 NaN 213940 35 0 30089 0.264 + -1 LYCFCIFVF 9 50 404.5254334902638 1210.5544710709914 3 404.525634765625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))FCIFVF_ REV__ENSG00000203933|ENST00000370540|CXorf66 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4835 0 0 898.4074506625915 0 898.4074506625915 0 17.95880017344075 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.4835 - 10 + NaN NaN 129979.1 NaN 20315 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25009 98.74 NaN 138840 35 0 22494 0.261 + 5466 FIPMWCLFF 9 41 602.2897552417202 1202.5649575502403 2 602.2894897460938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _FIPMWCLFF_ REV__ENSG00000163394|ENST00000295589|CCKAR 14.581692164780916 0.23437375358055648 2 E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 7 -1 40.137 0 0 3.3376 0 0 290.12596327949376 0 290.12596327949376 0 23.14744556320072 0 0 0 1.6237125054200234 0 0 0 E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3376 - 24 NaN NaN 113302 NaN 20316 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25010 98.743 NaN 70978 35 0 5681.4 0.262 + 23916 RTLFRGRRRRE 11 42 501.6343567671604 1501.8812409016812 3 501.634521484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _RTLFRGRRRRE_ ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98721 NaN 20317 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25011 98.746 NaN 129470 35 0 30693 0.261 + 4887 FAFPDEFVF 9 31 559.7632013013268 1117.5118496694536 2 559.7631225585938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _FAFPDEFVF_ ENSG00000123159|ENST00000393033|GIPC1;ENSG00000137960|ENST00000370759|GIPC2;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 36.198 0 0 3.2392 0 0 706.295987811338 0 706.295987811338 0 36.197887582883936 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.2392 + + 7 NaN NaN 108109.4 NaN 20318 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25012 98.75 NaN 59649 35 0 6895.9 0.261 -1 0 33 506.0867065791121 NaN 0 506.27801513671875 PEAK HCD FTMS 0 0 0 25003 10747.423828125 1 0 0 9 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.69194 0 0 212.72933148401893 681.3209932916624 894.0503247756812 0 0 0 0 0 0 0 0 0 {I|L} 0.69194 - 1 + NaN NaN 108899.6 NaN 20319 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25013 98.753 NaN 99138 35 0 9057 0.261 + 35199 YVLFLRHH 8 53 542.8063440631805 1083.598135193161 2 542.8058471679688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 Unmodified _YVLFLRHH_ ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF 14.581692164780916 0.48650662947107914 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P 7 4 60.578 0 0 5.5904 0 0 0 247.10637842349846 247.10637842349846 53.103575941663195 0 0 0 0 1.1861818737241734 2 0 0 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P 5.5904 - 63 + NaN NaN 121169.5 NaN 20320 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25014 98.756 NaN 78979 35 0 8637.4 0.261 -1 0 48 511.38408802654084 NaN 0 511.78155517578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 11 NaN NaN 2 D{I|L} 2 -1 6.4537 0 0 0.63224 0 0 130.29910759429418 659.3209932916624 789.6201008859566 0 0 0 0 0 0 0 0 0 D{I|L} 0.63224 - 3 + NaN NaN 99148.3 NaN 20321 4691 25003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25017 98.768 NaN 5039500 35 0 666200 0.327 -1 0 78 595.300237975155 594.292961508555 1 595.3005981445312 MULTI HCD FTMS 0 0 0 25016 3979351.5 1 0 0 1 NaN NaN 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 26.198 0 0 4.4082 0 0 169.06180971052146 0 169.06180971052146 0 1.021825181113627 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4082 - 26 + NaN NaN 868571.3 NaN 20322 4693 25016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25018 98.772 NaN 405290 35 0 89571 0.261 + 6188 FPELLPLSEL 10 48 579.3261376582044 1156.6377223832087 2 579.3262329101562 MULTI HCD FTMS 0 0 0 25016 124414.265625 0.16581393152113422 5 -0.0804443359375 2 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 32.78568957990786 0.20801173326193015 2 {I|L}[{I|L}P]SE{I|L} 6 4 43.773 0 0 3.7845 0 0 486.2463385235614 0 486.2463385235614 0 42.80394370788876 0 0 0 1.3494850021680094 0 0.4247425010840047 0 + {I|L}[{I|L}P]SE{I|L} 3.7845 + + 23 NaN NaN 150898.5 NaN 20323 4693 25016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25019 98.776 NaN 153980 35 0 7884.6 0.261 + -1 VRRERIEKIKC 11 67 496.2930888704701 1485.8574372116104 3 496.2933654785156 MULTI HCD FTMS 0 0 0 25016 59664.98046875 0.38827771663880417 12 -0.20101165771484375 3 Carbamidomethyl (C) _VRRERIEKIKC(Carbamidomethyl (C))_ REV__ENST00000548190.1_1_12:53849722-53854210:+|nuORF 0.40826533853263924 0.41713015341995335 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 0.94083 0 0 1320.7785015200072 0 1320.7785015200072 0 6.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.94083 - 7 + NaN NaN 132642.6 NaN 20324 4693 25016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25020 98.779 NaN 115270 35 0 10400 0.261 + 12472 KQRRLERRREF 11 57 525.3098725784537 1572.9077883355608 3 525.31005859375 MULTI HCD FTMS 0 0 0 25016 38227.48828125 0.6546748209371257 -4 0.06850433349609375 4 Unmodified _KQRRLERRREF_ REV__ENSG00000122786|ENST00000361675|CALD1;REV__ENST00000475772.5_1_7:134552484-134552556:+|nuORF;REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF;REV__nc|ENSG00000122786|Q05682-2|CALD1;REV__nc|ENSG00000122786|Q05682-4|CALD1;REV__nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 2 A{M(Oxidation (M))|F} 2 -1 17.078 0 0 1.0858 0 0 1336.7921399974732 0 1336.7921399974732 0 11.593793813122062 0 0 0 0 0 0 0 A{M(Oxidation (M))|F} 1.0858 - 26 + NaN NaN 117652.4 NaN 20325 4693 25016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25021 98.783 NaN 312140 35 0 84181 0.261 -1 YCCVFYGQSF 10 42 637.2568861789439 1272.4992194246877 2 637.7573852539062 MULTI HCD FTMS 0 0 0 25016 7753.197265625 0.4445160239164771 -2 0.04618072509765625 5 Carbamidomethyl (C) _YC(Carbamidomethyl (C))CVFYGQSF_ ENSG00000204195|ENST00000374521|AWAT1 5.296884461304476 0.4472664531305844 2 S{I|L} 2 -1 14.024 0 0 1.1021 0 0 164.9502650833411 904.4110811822874 1069.3613462656285 0 0 0 0 0 0 0 0.3054621874040891 0 S{I|L} 1.1021 - 6 + NaN NaN 141279 NaN 20326 4693 25016 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25023 98.787 NaN 98954 35 0 11451 0.327 + 13821 KYPSPFFVF 9 40 566.2973761637754 1130.5801993943508 2 566.2977294921875 MULTI HCD FTMS 0 0 0 25022 32162.87890625 0.7015736994761436 -5 0.08750152587890625 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 27.959 0 0 2.473 0 0 866.4318498872332 0 866.4318498872332 0 17.501225267834002 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.473 + + 34 NaN NaN 101612.8 NaN 20327 4694 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25024 98.792 NaN 294860 35 0 37807 0.264 -1 0 38 405.1891480373823 404.18187157078233 1 405.1875 MULTI HCD FTMS 0 0 0 25022 38843.796875 0.6402485892206322 -3 0.06517791748046875 2 NaN NaN 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 19.464 0 0 4.8156 0 0 92.0348424765128 0 92.0348424765128 0 15.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8156 - 6 + NaN NaN 137686.8 NaN 20328 4694 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25025 98.795 NaN 83727 35 0 6124.5 0.261 + -1 FKRLMMCLI 9 42 585.813516312158 NaN 0 585.8125610351562 PEAK HCD FTMS 0 0 0 25022 32871.76953125 0.46774743469568525 -3 0.06517791748046875 3 Oxidation (M) _FKRLM(Oxidation (M))MCLI_ REV__ENSG00000105671|ENST00000247003|DDX49;REV__ENST00000595858.5_1_19:19032475-19037138:+|nuORF;REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF;REV__nc|ENSG00000105671|Q9Y6V7-2|DDX49 12.531546534597751 0.23452071659215576 2 {I|L} 1 -1 11.99 0 0 1.0251 0 0 131.09413102052446 922.4059351037394 1053.5000661242639 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0251 + + 7 + NaN NaN 105415.9 NaN 20329 4694 25022 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25027 98.8 NaN 319450 35 0 88726 0.327 -1 TYPCHYCNK 9 47 621.755514951452 1241.496476969704 2 621.7554931640625 MULTI HCD FTMS 0 0 0 25026 163061.453125 0.2906989175546281 7 -0.1400146484375 1 2 Carbamidomethyl (C) _TYPC(Carbamidomethyl (C))HYC(Carbamidomethyl (C))NK_ ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 8 -1 28.082 0 0 2.262 0 0 0 346.0028777952638 346.0028777952638 6.14393726401687 0 0 0 0 0 1.5228787452803376 0 0 [YT]A[{I|L}P]{M(Oxidation (M))|F}S{I|L} 2.262 - 154 NaN NaN 158626.7 NaN 20330 4695 25026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25028 98.805 NaN 74755 35 0 17478 0.264 -1 EMEEMKEKMR 10 38 452.87025904534295 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 25026 25969.130859375 0.7333997112115512 1 -0.00960540771484375 2 Oxidation (M) _EM(Oxidation (M))EEMKEKMR_ ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101838.2 NaN 20331 4695 25026 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25030 98.81 NaN 497080 35 0 232480 0.327 + 16653 LWFSSPSTISF 11 55 636.3187398676315 1270.622926802063 2 636.3189697265625 MULTI HCD FTMS 0 0 0 25029 208410.984375 0.40408157960620117 -1 0.00960540771484375 1 Unmodified _LWFSSPSTISF_ REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5 17.04857598603903 0.30853761023565673 2 {I|L}S{M(Oxidation (M))|F} 3 -1 40.005 0 0 3.1485 0 0 905.4273944185773 0 905.4273944185773 0 29.547509540478032 0 0 0 1 0 0.3807196863200844 0 {I|L}S{M(Oxidation (M))|F} 3.1485 + + 20 NaN NaN 165094.6 NaN 20332 4696 25029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25031 98.814 NaN 81351 35 0 9573.8 0.261 + 33771 YLFNKDIFF 9 23 603.8135351090433 1205.6125172848865 2 603.8134765625 MULTI HCD FTMS 0 0 0 25029 26959.642578125 0.12697160387077783 8 -0.1504058837890625 2 Unmodified _YLFNKDIFF_ REV__tr|U7SRL5|U7SRL5_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01568PE=3SV=1 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F}{I|L}[HN]S{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 8 -1 22.396 0 0 1.8576 0 0 182.1082786910236 0 182.1082786910236 0 22.395775165767873 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{I|L}[HN]S{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]} 1.8576 - 42 + NaN NaN 99197.6 NaN 20333 4696 25029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25032 98.818 NaN 85694 35 0 6524.9 0.261 + 32063 VYQIFDTFF 9 54 590.2899469494847 NaN 0 590.3186645507812 PEAK HCD FTMS 0 0 0 25029 5242.2314453125 0.19601187103374143 1 -0.0159759521484375 3 Unmodified _VYQIFDTFF_ ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1 9.38312468134398 0.24977752951804 2 D{M(Oxidation (M))|F} 2 7 15.133 0 0 1.284 0 0 413.1987160651818 500.25327478580317 913.451990850985 0 0 0 0 0 0.805462187404089 0 0 0 D{M(Oxidation (M))|F} 1.284 - 27 + NaN NaN 105009 NaN 20334 4696 25029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25033 98.821 NaN 57496 35 0 10816 0.261 -1 MILCSRLCLP 10 34 582.8018245389945 1163.589096144789 2 582.8028564453125 MULTI HCD FTMS 0 0 0 25029 14224.87890625 0.4224397261913932 1 -0.0159759521484375 4 Oxidation (M) _M(Oxidation (M))ILCSRLCLP_ ENSG00000213638|ENST00000329478|ADAT3 3.2813086475875832 0.45793521633868084 2 N{I|L}{I|L}{[QN]|[E{I|L}]|[KN]} 5 -1 5.1452 0 0 0.44219 0 0 563.2414417951187 0 563.2414417951187 0 5.145228064085997 0 0 0 0.3182503180159344 0 0 0 N{I|L}{I|L}{[QN]|[E{I|L}]|[KN]} 0.44219 - 2 NaN NaN 100039.4 NaN 20335 4696 25029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25035 98.826 NaN 83795 35 0 9322.3 0.327 + 787 ASVIYGFSLL 10 31 535.2997270736619 1068.5849012141236 2 535.3002319335938 MULTI HCD FTMS 0 0 0 25034 194560.234375 0.5492708093660498 -2 0.02558135986328125 1 Unmodified _ASVIYGFSLL_ ENST00000560079.6_1_15:85345654-85346083:+|nuORF 17.11289562659939 0.35104376501799556 2 {M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L} 4 6 26.198 0 0 2.4516 0 0 590.3057728498062 0 590.3057728498062 0 19.20818753952375 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{[TV]|[{I|L}S]}{I|L} 2.4516 + + 13 NaN NaN 95388.9 NaN 20336 4697 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25036 98.83 NaN 181800 35 0 24036 0.261 + 18066 MMAMRIAYF 9 61 567.268795650848 1132.523038368496 2 567.2689208984375 MULTI HCD FTMS 0 0 0 25034 44612.5625 0.4218658658436807 -2 0.02558135986328125 2 Unmodified _MMAMRIAYF_ tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1 7.289230182591677 0.29575926068275815 2 V{M(Oxidation (M))|F} 2 8 24.464 0 0 2.1601 0 0 868.3759569249397 0 868.3759569249397 0 1.2763625255165323 0 0 0 0.5 0 0 0 V{M(Oxidation (M))|F} 2.1601 - 104 + NaN NaN 141051 NaN 20337 4697 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25037 98.834 NaN 126960 35 0 26270 0.264 + 21433 PVVHSVGH 8 48 416.2278741733336 NaN 0 416.1763916015625 PEAK HCD FTMS 0 0 0 25034 28914.41015625 1 0 0 3 Unmodified _PVVHSVGH_ REV__ENSG00000148156|ENST00000374667|ACTL7B 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109314.6 NaN 20338 4697 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25038 98.837 NaN 60943 35 0 13007 0.261 + -1 TKMSGCSYGSS 11 34 582.7341093733877 1163.4536658135753 2 582.7335815429688 MULTI HCD FTMS 0 0 0 25034 22374.755859375 0.4407607068007472 -2 0.02558135986328125 4 Carbamidomethyl (C) _TKMSGC(Carbamidomethyl (C))SYGSS_ REV__ENST00000418231.2_1_X:73350641-73351442:+|nuORF 1.1933415558491238 0.4136870758253112 2 M 1 -1 4.6041 0 0 0.39573 0 0 694.255528461816 335.1261080377563 1029.3816364995723 0 0 0 0 0 0 0 0 0 M 0.39573 + + 1 + NaN NaN 109350.9 NaN 20339 4697 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25039 98.841 NaN 54565 35 0 7463.8 0.261 + -1 IYRCPNRL 8 34 546.290876338011 1090.567199742822 2 546.7927856445312 MULTI HCD FTMS 0 0 0 25034 15491.6953125 0.39863574993747874 -1 0.0159759521484375 5 Carbamidomethyl (C) _IYRC(Carbamidomethyl (C))PNRL_ REV__ENST00000273317.4_1_3:45719339-45719444:+|nuORF 9.347437153973935 0.5250182646323369 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 93661.2 NaN 20340 4697 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25040 98.844 NaN 29726 35 0 3186.6 0.261 + 26358 SSKMSDAEEWN 11 29 642.2645998175452 NaN 0 642.2648315429688 PEAK HCD FTMS 0 0 0 25034 5212.1953125 0.327654318729121 1 -0.0229339599609375 6 Unmodified _SSKMSDAEEWN_ REV__ENSG00000131323|ENST00000392745|TRAF3;REV__nc|ENSG00000131323|Q13114-2|TRAF3 2.0860074813731053 0.3362027409827022 2 W 1 -1 7.7423 0 0 0.60368 0 0 520.2218743403654 573.1958101861936 1093.417684526559 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.60368 + + 1 + NaN NaN 99151.7 NaN 20341 4697 25034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25042 98.849 NaN 316730 35 0 56493 0.327 + -1 IYEYVMHQL 9 38 606.2913288335012 1210.5681047338023 2 606.2918090820312 MULTI HCD FTMS 0 0 0 25041 182650.953125 0.36150293963913355 3 -0.075286865234375 1 Oxidation (M) _IYEYVM(Oxidation (M))HQL_ REV__ENSG00000187240|ENST00000375735|DYNC2H1;REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 19.256988751693697 0.19398022840297344 2 {I|L}YE 3 -1 58.188 0 0 4.8066 0 0 0 802.3541971450023 802.3541971450023 21.989700043360187 0 0 0 0 0.8494850021680094 2 0.3494850021680094 0 {I|L}YE 4.8066 + + 85 + NaN NaN 142577.4 NaN 20342 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25043 98.853 NaN 159230 35 0 18454 0.261 -1 MIYPACFVL 9 45 586.2796454773825 1170.5447380215649 2 586.2800903320312 MULTI HCD FTMS 0 0 0 25041 53920.453125 0.114881038895531 -9 0.14894866943359375 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 -1 45.433 0 0 3.8814 0 0 646.2452870099625 0 646.2452870099625 0 19.235162698957282 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.8814 - 42 NaN NaN 137649.2 NaN 20343 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25044 98.857 NaN 246500 35 0 37003 0.261 + 35492 YYFLFAPTL 9 62 567.7994271998077 1133.5843014664154 2 567.7977905273438 MULTI HCD FTMS 0 0 0 25041 41198.25 0.4426197021305419 -1 0.0229339599609375 3 Unmodified _YYFLFAPTL_ ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF 23.1484247019978 0.1603590852062899 2 QAA{M(Oxidation (M))|F} 4 8 33.686 0 0 2.9716 0 0 130.0807747103591 583.2569063775999 713.337681087959 0 0 0 0 0 1.3252574989159953 0 0 0 QAA{M(Oxidation (M))|F} 2.9716 - 120 + NaN NaN 145808.2 NaN 20344 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25045 98.86 NaN 145260 35 0 22655 0.261 -1 CLISMDLIF 9 50 564.2761105290973 1126.5376681249945 2 564.2763671875 MULTI HCD FTMS 0 0 0 25041 54259.36328125 0.6625851032611039 -3 0.04851531982421875 4 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LISM(Oxidation (M))DLIF_ ENST00000505065.1_1_5:130727572-130727803:+|nuORF 12.531546534597751 0.2520865569484384 2 {M(Oxidation (M))|F}TT{M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F} 7 -1 40.398 0 0 3.5861 0 0 166.08126050956326 0 166.08126050956326 0 35.79435119098427 0 0 0 1 0 0 0 {M(Oxidation (M))|F}TT{M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F} 3.5861 - 66 + NaN NaN 136551.4 NaN 20345 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25046 98.864 NaN 112970 35 0 7962.9 0.261 + 17154 LYLPSFFTY 9 46 575.7935210310974 1149.5724891289947 2 575.7940673828125 MULTI HCD FTMS 0 0 0 25041 26566.966796875 0.4664975280130965 1 -0.0361175537109375 5 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 15.847184025352803 0.2234401846867398 2 [Y{I|L}]{I|L} 3 6 13.072 0 0 1.1371 0 0 0 757.3185272972165 757.3185272972165 5.725599829726422 0 0 0 0 0.5 0 0 0 + [Y{I|L}]{I|L} 1.1371 + + 7 NaN NaN 116425.6 NaN 20346 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25047 98.867 NaN 51216 35 0 5734.7 0.261 + 23497 RMQRVLSLV 9 29 551.3311386784746 1100.6477244237492 2 551.3126831054688 MULTI HCD FTMS 0 0 0 25041 19116.6875 0.4212386616999258 1 -0.0361175537109375 6 Unmodified _RMQRVLSLV_ ENSG00000039139|ENST00000265104|DNAH5 2.0597508629832335 0.3354026079994024 2 V 1 8 5.4846 0 0 0.4983 0 0 131.13125297005996 867.4376925104124 998.5689454804724 0 0 0 0 0 0 0 0 0 + V 0.4983 + + 3 + NaN NaN 119658.5 NaN 20347 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25048 98.87 NaN 103920 35 0 15889 0.261 + -1 LSGLMRDYF 9 38 559.2730285948986 1116.5315042565971 2 559.765380859375 MULTI HCD FTMS 0 0 0 25041 6425.390625 0.8172905469384957 -3 0.04851531982421875 7 Oxidation (M) _LSGLM(Oxidation (M))RDYF_ REV__ENST00000217964.11_1_X:9433148-9621615:+|nuORF;REV__ENST00000407597.6_1_X:9431427-9621615:+|nuORF;REV__ENST00000424279.5_1_X:9469831-9622294:+|nuORF 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.3868 0 0 951.4528432231972 0 951.4528432231972 0 10.880456295278407 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3868 + + 9 + NaN NaN 115272.3 NaN 20348 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25049 98.873 NaN 102350 35 0 6669.9 0.261 + -1 KRRQLCVRKLM 11 50 510.6342607216871 1528.8809527652613 3 510.6341552734375 MULTI HCD FTMS 0 0 0 25041 25711.15625 0.17580099347282266 -36 0.6257705688476562 8 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 M 1 -1 3.4949 0 0 0.22859 0 0 964.7288054037364 430.0967196100219 1394.8255250137584 0 0 0 0 0 0 0 0 0 M 0.22859 + + 3 + NaN NaN 121083.4 NaN 20349 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25050 98.877 NaN 88550 35 0 19316 0.261 + -1 VSPMCHCAPF 10 33 582.7341093733877 1163.4536658135753 2 583.2361450195312 MULTI HCD FTMS 0 0 0 25041 6945.0048828125 0.20934847703423198 1 -0.0361175537109375 9 Carbamidomethyl (C),Oxidation (M) _VSPM(Oxidation (M))C(Carbamidomethyl (C))HCAPF_ REV__ENST00000587019.5_1_19:13869900-13872373:+|nuORF 3.5964929083625545 0.45626689593999237 2 {I|L} 1 -1 5.4846 0 0 0.4714 0 0 486.1486864208003 561.1914156549436 1047.340102075744 0 0 0 0 0 0 0 0 0 {I|L} 0.4714 - 9 + NaN NaN 109192.1 NaN 20350 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25051 98.88 NaN 53783 35 0 7155.3 0.261 + -1 NSRRLCNQQL 10 27 644.8313671211689 1287.6481813091377 2 644.8314819335938 MULTI HCD FTMS 0 0 0 25041 6244.60791015625 0.20546865937715586 1 -0.0361175537109375 10 Carbamidomethyl (C) _NSRRLC(Carbamidomethyl (C))NQQL_ REV__ENST00000327040.12_1_8:18413849-18430063:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100922.8 NaN 20351 4698 25041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25053 98.885 NaN 978990 35 0 195180 0.327 + 31746 VYLLTFPPL 9 59 531.8152610589307 1061.6159691846613 2 531.8156127929688 MULTI HCD FTMS 0 0 0 25052 701972.5625 0.8757286133209204 2 -0.0391693115234375 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 105.19 0 0 9.9082 9.9082 96.556 0 0 0 19.621892823592972 90.17056209966988 19.621892823592972 16.505149978319906 0 2.774227503252014 1.3979400086720375 1.1861818737241734 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L} 9.9082;8.3535;7.9949;6.2713 +;-;-;- + 367 NaN NaN 244612 NaN 20352 4699 25052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25054 98.889 NaN 769290 35 0 127320 0.261 + -1 LMETRDALF 9 67 556.2776325455607 1110.5407121579212 2 556.2783203125 MULTI HCD FTMS 0 0 0 25052 725709.25 1 0 0 2 Oxidation (M) _LM(Oxidation (M))ETRDALF_ REV__ENST00000420250.1_2_2:190526231-190530834:+|nuORF;REV__ENST00000605941.5_1_2:190528642-190530834:+|nuORF;REV__nc|ENSG00000286053|L0R819|ASDURF 34.40172386719151 0.0910440009062557 2 [{M(Oxidation (M))|F}E]{I|L}{[VA]|[{I|L}G]}SW{I|L}{M(Oxidation (M))|F} 9 -1 + 63.952 0 0 5.7587 5.7587 83.921 0 0 0 0.7918124604762511 14.785321550739596 0.7918124604762511 0.7918124604762511 0 2 0 1.3829131673969606 0 [{M(Oxidation (M))|F}E]{I|L}{[VA]|[{I|L}G]}SW{I|L}{M(Oxidation (M))|F};[EP]Y{[VA]|[{I|L}G]}SW{I|L}{M(Oxidation (M))|F};[EP][{M(Oxidation (M))|F}V]SSW{I|L}{M(Oxidation (M))|F};{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}[DV][MT]{I|L}{M(Oxidation (M))|F};[W{I|L}]S[DV][MT]{I|L}{M(Oxidation (M))|F};[EP][{M(Oxidation (M))|F}V]Q[MT]{I|L}{M(Oxidation (M))|F} 5.7587;5.6874;4.7774;3.2792;3.0082;2.2202 -;-;-;-;-;- 358 NaN NaN 204950.6 NaN 20353 4699 25052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25055 98.893 NaN 96404 35 0 23038 0.264 + 12075 KKELFTIGFK 10 38 404.24595349823534 NaN 0 404.23358154296875 PEAK HCD FTMS 0 0 0 25052 5016.1669921875 0.7870642137310397 1 -0.0196380615234375 3 Unmodified _KKELFTIGFK_ REV__ENST00000551617.1_1_12:100599472-100601453:+|nuORF 3.2813086475875832 0.33737594360511275 2 W 1 -1 1.7827 0 0 0.22105 0 0 217.60023111580819 399.7843416803344 617.3845727961426 0 0 0 0 0 0 0 0 0 W 0.22105 - 1 + NaN NaN 109518.1 NaN 20354 4699 25052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25056 98.896 NaN 109890 35 0 16637 0.261 + 7326 FVAEFSVPLL 10 45 561.3159554901032 1120.6173580470063 2 561.3154907226562 MULTI HCD FTMS 0 0 0 25052 39566.59375 0.7487292950978828 10 -0.134246826171875 4 Unmodified _FVAEFSVPLL_ ENSG00000169777|ENST00000382492|TAS2R1 10.073929032068715 0.4168838835836452 2 V[{I|L}P]{I|L} 4 6 22.435 0 0 2.002 0 0 680.3198109357437 0 680.3198109357437 0 17.830918867322296 0 0 0 0.9247425010840047 0 0 0 + V[{I|L}P]{I|L} 2.002 + + 10 NaN NaN 130480.3 NaN 20355 4699 25052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25057 98.9 NaN 48087 35 0 5713.8 0.261 + -1 RAKMGPYM 8 37 485.23639680067595 NaN 0 485.2356872558594 PEAK HCD FTMS 0 0 0 25052 13418.734375 0.7003948900799567 -5 0.097564697265625 5 Oxidation (M) _RAKM(Oxidation (M))GPYM_ REV__ENSG00000101442|ENST00000243903|ACTR5 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115565.9 NaN 20356 4699 25052 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25059 98.905 NaN 1777900 35 0 220740 0.327 -1 0 78 595.300237975155 594.292961508555 1 595.3004760742188 MULTI HCD FTMS 0 0 0 25058 1266449.5 0.3182552483740127 7 -0.0849761962890625 1 NaN NaN 2 [Y{I|L}]EP 4 -1 22.14 0 0 3.7254 0 0 0 89.02872922365404 89.02872922365404 11.682437647924216 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]EP 3.7254 - 22 NaN NaN 367422.9 NaN 20357 4700 25058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25060 98.909 NaN 142920 35 0 19868 0.261 + 6189 FPELLPLSEL 10 47 579.3261376582044 1156.6377223832087 2 579.3260498046875 MULTI HCD FTMS 0 0 0 25058 66882.2890625 0.08913781102894389 12 -0.1573486328125 2 Unmodified _FPELLPLSEL_ ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2 8.745405648335112 0.42901288225909884 2 SE{I|L} 3 7 26.198 0 0 2.265 0 0 809.4676380841812 0 809.4676380841812 0 26.197887582883936 0 0 0 0 0 0 0 + SE{I|L} 2.265 + + 3 NaN NaN 115036 NaN 20358 4700 25058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25061 98.913 NaN 147710 35 0 17770 0.261 + 35200 YVLFLRHH 8 46 542.8063440631805 1083.598135193161 2 542.8067626953125 MULTI HCD FTMS 0 0 0 25058 118477.3515625 0.9348949416879732 -7 0.136199951171875 3 Unmodified _YVLFLRHH_ ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF 14.581692164780916 0.48650662947107914 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P 7 4 69.257 0 0 6.3914 0 0 0 247.10537134342033 247.10537134342033 58.45516025450024 0 0 0 0 1.9916440611282624 1.6989700043360187 0 0 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P 6.3914 - 119 + NaN NaN 129501.2 NaN 20359 4700 25058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25062 98.916 NaN 111050 35 0 21972 0.261 + 7327 FVAEFSVPLL 10 38 561.3159554901032 1120.6173580470063 2 561.3158569335938 MULTI HCD FTMS 0 0 0 25058 34304.5 0.6491532798090642 11 -0.1501922607421875 4 Unmodified _FVAEFSVPLL_ ENSG00000169777|ENST00000382492|TAS2R1 10.073929032068715 0.4168838835836452 2 V[{I|L}P]{I|L} 4 6 25.445 0 0 2.2707 0 0 680.3141346662125 0 680.3141346662125 0 18.455612550363796 0 0 0 0.9247425010840047 0 0 0 + V[{I|L}P]{I|L} 2.2707 + + 15 NaN NaN 106088.5 NaN 20360 4700 25058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25063 98.919 NaN 13771 35 0 2864.6 0.261 + 35242 YVPGQCKSQLD 11 12 619.297607421875 NaN 0 619.297607421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YVPGQCKSQLD_ REV__ENSG00000163930|ENST00000460680|BAP1 1.0714618166137932 0.3390807148598227 2 {I|L} 1 -1 3.9794 0 0 0.32181 0 0 523.6354699201187 596.8358248346311 1120.4712947547498 0 0 0 0 0 0 0 0 0 {I|L} 0.32181 + + 1 + NaN NaN 111418.5 NaN 20361 4700 25058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25065 98.924 NaN 66150 35 0 7144.1 0.327 + 32600 WKWFKHIIRFI 11 42 525.3098725784537 1572.9077883355608 3 525.3096313476562 MULTI HCD FTMS 0 0 0 25064 32212.06640625 0.5516561446928773 4 -0.04528045654296875 1 Unmodified _WKWFKHIIRFI_ ENST00000409175.5_1_2:160599702-160602296:+|nuORF 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104774.3 NaN 20362 4701 25064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25066 98.929 NaN 48827 35 0 4692 0.261 + -1 KVQMCPCLF 9 35 563.2677346262954 NaN 0 563.2681884765625 PEAK HCD FTMS 0 0 0 25064 18528.197265625 0.5754111443500304 1 -0.01621246337890625 2 Carbamidomethyl (C) _KVQMC(Carbamidomethyl (C))PCLF_ REV__ENST00000478691.5_1_1:23634998-23635076:-|nuORF 11.640296217721598 0.23883959125015683 2 {I|L} 1 -1 10.797 0 0 0.96013 0 0 165.07823318376614 843.3369845025999 1008.4152176863661 0 0 0 0 0 0.3807196863200844 0 0 0 {I|L} 0.96013 + + 2 + NaN NaN 97804.1 NaN 20363 4701 25064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25067 98.932 NaN 39773 35 0 4766.3 0.261 + 14941 LLFMFFSFE 9 31 590.7913818359375 NaN 0 590.7913818359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LLFMFFSFE_ REV__ENST00000379514.2_1_9:33503785-33510678:-|nuORF 1.844237919475145 0.28630992268396543 2 {M(Oxidation (M))|F} 1 -1 13.539 0 0 1.1488 0 0 528.2221479474625 500.25144373111567 1028.4735916785783 0 0 0 0 0 0.805462187404089 0 0 0 {M(Oxidation (M))|F} 1.1488 + + 2 + NaN NaN 113432 NaN 20364 4701 25064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25068 98.935 NaN 45340 35 0 5363.8 0.262 -1 0 28 484.3843078613281 NaN 0 484.3843078613281 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111936.6 NaN 20365 4701 25064 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25070 98.94 NaN 658340 35 0 220000 0.327 + 16654 LWFSSPSTISF 11 62 636.3187398676315 1270.622926802063 2 636.3190307617188 MULTI HCD FTMS 0 0 0 25069 352066.65625 0.6826110965830586 5 -0.04923248291015625 1 Unmodified _LWFSSPSTISF_ REV__nc|ENSG00000125611|Q9BSY4-2|CHCHD5 27.088373467376528 0.22106052561220446 2 E{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 6 -1 50.763 0 0 3.9951 0 0 606.2752552716812 0 606.2752552716812 0 31.096981436199012 0 0 0 1.3494850021680094 0 1.274227503252014 0 E{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 3.9951 - 77 NaN NaN 187847.9 NaN 20366 4702 25069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25071 98.945 NaN 133130 35 0 28348 0.261 + -1 YRGDPSWCVC 10 40 621.755514951452 1241.496476969704 2 621.7555541992188 MULTI HCD FTMS 0 0 0 25069 42102.9609375 0.07505934073207127 14 -0.16436767578125 2 Carbamidomethyl (C) _YRGDPSWCVC(Carbamidomethyl (C))_ REV__ENSG00000185800|ENST00000270223|DMWD 1.4819007175156935 0.4674597685733628 2 R{M(Oxidation (M))|F}S{I|L} 4 -1 17.423 0 0 1.4034 0 0 389.0692441589602 346.1403902643188 735.209634423279 0 0 0 0 0 0 0 0 0 R{M(Oxidation (M))|F}S{I|L} 1.4034 - 56 + NaN NaN 118237 NaN 20367 4702 25069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25072 98.948 NaN 35763 35 0 5553.8 0.261 + 33329 YFVRVFHE 8 32 548.7817956530284 NaN 0 548.7817993164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YFVRVFHE_ REV__tr|U7T6L2|U7T6L2_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00284PE=4SV=1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91086.9 NaN 20368 4702 25069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25075 98.96 NaN 118100 35 0 8815.1 0.327 + 31304 VWLPASVLF 9 48 516.2997649442804 1030.5849769553606 2 516.3104248046875 MULTI HCD FTMS 0 0 0 25074 6720.75830078125 0.0892446167860873 -7 0.134429931640625 1 Unmodified _VWLPASVLF_ ENSG00000134490|ENST00000383233|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;nc|ENSG00000134490|Q24JQ0-2|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241 28.486842064014134 0.11819662193267319 2 RV{I|L}{M(Oxidation (M))|F} 4 6 36.542 0 0 3.5458 0 0 497.25157363105626 0 497.25157363105626 0 36.542294029923 0 0 0 1.110924374808178 0 0 0 RV{I|L}{M(Oxidation (M))|F} 3.5458 - 19 NaN NaN 119524.3 NaN 20369 4704 25074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25076 98.964 NaN 148490 35 0 29877 0.261 + 28973 TYAPLFSLPSF 11 45 621.8239752625715 NaN 0 621.8236694335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 33.4449034751529 0.1559685210991938 2 R{M(Oxidation (M))|F}S{I|L} 4 8 36.983 0 0 2.9785 0 0 389.20573753510536 346.14109216861567 735.346829703721 0 0 0 0 0 1.805462187404089 0 0 0 R{M(Oxidation (M))|F}S{I|L} 2.9785 - 56 + NaN NaN 102937.4 NaN 20370 4704 25074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25078 98.969 NaN 147790 35 0 20112 0.411 + -1 IYEYVMHQL 9 53 606.2913288335012 1210.5681047338023 2 606.2908935546875 MULTI HCD FTMS 0 0 0 25077 58202.953125 0.11519534002084716 10 -0.12615966796875 1 Oxidation (M) _IYEYVM(Oxidation (M))HQL_ REV__ENSG00000187240|ENST00000375735|DYNC2H1;REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 19.256988751693697 0.19398022840297344 2 {I|L}YE{[ET]|[MV]}Q{I|L} 7 -1 59.742 0 0 4.935 0 0 0 331.10590540103755 331.10590540103755 26.55410404594221 0 0 0 0 1.3807196863200843 1.6989700043360187 0.3494850021680094 0 {I|L}YE{[ET]|[MV]}Q{I|L} 4.935 - 120 + NaN NaN 135795 NaN 20371 4705 25077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25080 98.977 NaN 156500 35 0 21222 0.327 -1 MIYPACFVL 9 53 586.2796454773825 1170.5447380215649 2 586.2800903320312 MULTI HCD FTMS 0 0 0 25079 91100.9140625 0.19409643364031892 -1 0.0074920654296875 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 -1 44.68 0 0 3.8171 0 0 646.243944236525 0 646.243944236525 0 18.48258770979733 0 0 0 1.274227503252014 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.8171 - 45 NaN NaN 117017.5 NaN 20372 4706 25079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25081 98.981 NaN 97541 35 0 7083.3 0.261 + 13822 KYPSPFFVF 9 45 566.2973761637754 1130.5801993943508 2 566.2970581054688 MULTI HCD FTMS 0 0 0 25079 32036.16796875 0.6988097347998132 7 -0.10407257080078125 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.13340543277302316 2 NPV{M(Oxidation (M))|F} 4 6 38.404 0 0 3.3968 0 0 655.3388796695446 0 655.3388796695446 0 17.43501263708417 0 0 0 1.4247425010840047 0 0 0 NPV{M(Oxidation (M))|F} 3.3968 - 73 + NaN NaN 102382.5 NaN 20373 4706 25079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25082 98.985 NaN 433970 35 0 86389 0.261 + -1 GDWSNLSMSFL 11 55 636.7798679485976 1271.545182963995 2 637.2557983398438 MULTI HCD FTMS 0 0 0 25079 13053.4052734375 0.3782797797520745 7 -0.10407257080078125 3 Oxidation (M) _GDWSNLSM(Oxidation (M))SFL_ REV__ENSG00000172243|ENST00000304084|CLEC7A;REV__ENST00000528799.1_1_12:10277853-10282681:-|nuORF;REV__ENST00000534609.5_1_12:10277688-10279386:-|nuORF;REV__nc|ENSG00000172243|Q9BXN2-2|CLEC7A;REV__nc|ENSG00000172243|Q9BXN2-3|CLEC7A;REV__nc|ENSG00000172243|Q9BXN2-4|CLEC7A;REV__nc|ENSG00000172243|Q9BXN2-5|CLEC7A;REV__nc|ENSG00000172243|Q9BXN2-6|CLEC7A;REV__nc|ENSG00000172243|Q9BXN2-7|CLEC7A 6.630372943996041 0.3898421031449734 2 S{I|L}{[HG]|PP}{I|L}W{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 9 -1 28.592 0 0 2.2486 0 0 164.9972821771708 0 164.9972821771708 0 14.882287586051108 0 0 0 0.9177353201839438 0 1.2302046884880937 0 S{I|L}{[HG]|PP}{I|L}W{M(Oxidation (M))|F}[{M(Oxidation (M))|F}T] 2.2486 - 133 + NaN NaN 171686.1 NaN 20374 4706 25079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25085 98.996 NaN 86622 35 0 12289 0.327 + 5924 FPDLVEGLVL 10 30 551.3130878471522 1100.6116227611044 2 551.313232421875 MULTI HCD FTMS 0 0 0 25084 69254.953125 0.6556583021972153 1 -0.0223846435546875 1 Unmodified _FPDLVEGLVL_ ENSG00000103034|ENST00000570248|NDRG4;ENST00000561720.5_1_16:58529427-58541082:+|nuORF;ENST00000565981.5_1_16:58539993-58546041:+|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-4|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4 9.38312468134398 0.42334543440173333 2 V{I|L} 2 8 20.969 0 0 1.9052 0 0 870.443162986525 0 870.443162986525 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 1.9052 + + 2 NaN NaN 102278 NaN 20375 4708 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25086 99.001 NaN 141500 35 0 10973 0.261 + 23413 RLKHEHIERRR 11 61 510.6342607216871 1528.8809527652613 3 510.6343994140625 MULTI HCD FTMS 0 0 0 25084 45032.515625 0.3079115115818803 -26 0.4062957763671875 2 Unmodified _RLKHEHIERRR_ ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105392.5 NaN 20376 4708 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25087 99.004 NaN 137540 35 0 10621 0.261 + -1 LFPHCCPLF 9 49 567.268795650848 1132.523038368496 2 567.2684936523438 MULTI HCD FTMS 0 0 0 25084 27323.013671875 0.25837222015983213 8 -0.10788726806640625 3 Carbamidomethyl (C) _LFPHC(Carbamidomethyl (C))CPLF_ REV__ENST00000484432.1_1_7:129683626-129691088:-|nuORF 9.347437153973935 0.2795965555214564 2 {M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4 -1 27.167 0 0 2.3988 0 0 586.2823353498062 0 586.2823353498062 0 6.197887582883936 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 2.3988 - 29 NaN NaN 118156.7 NaN 20377 4708 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25088 99.008 NaN 127520 35 0 21357 0.261 + 25541 SFLPTSPLLGF 11 42 589.8264525501278 1177.6383521670555 2 589.827392578125 MULTI HCD FTMS 0 0 0 25084 62849.82421875 0.3229623163811098 -11 0.1709136962890625 4 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 32.78568957990786 0.18341249061758555 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]S 6 5 38.389 0 0 3.2599 0 0 0 542.3020650751854 542.3020650751854 32.30713133096572 0 0 0 0 1 1.6989700043360187 0.3494850021680094 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]S 3.2599 + + 32 NaN NaN 130888.4 NaN 20378 4708 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25089 99.011 NaN 98211 35 0 16557 0.262 -1 0 33 508.25217764388975 507.24490117728976 1 508.251953125 MULTI HCD FTMS 0 0 0 25084 39368.35546875 0.36052193069470206 -16 0.2355194091796875 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 107973 NaN 20379 4708 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25090 99.014 NaN 41916 35 0 4436.5 0.261 -1 0 31 602.3124378419323 601.3051613753322 1 602.3145751953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100568.1 NaN 20380 4708 25084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25092 99.019 NaN 927830 35 0 186140 0.327 + 31747 VYLLTFPPL 9 58 531.8152570383778 1061.6159611435555 2 531.8155517578125 MULTI HCD FTMS 0 0 0 25091 583701 0.5656113354635374 2 -0.03558349609375 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 105.19 0 0 9.9082 9.9082 96.561 0 0 0 19.621892823592972 93.21505917896121 19.621892823592972 16.505149978319906 0 2.7302046884880937 1.3979400086720375 1.2302046884880937 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L};[YV][VP]{I|L}[YV]P{I|L} 9.9082;8.3535;7.9949;6.2298;2.9772 +;-;-;-;- + 321 NaN NaN 238986.3 NaN 20381 4709 25091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25093 99.024 NaN 53683 35 0 7332.4 0.261 + -1 PMMLTMLE 8 31 491.2253789967538 NaN 0 490.7651672363281 PEAK HCD FTMS 0 0 0 25091 7098.0849609375 0.384773615060108 -12 0.19329833984375 2 Oxidation (M) _PMMLTM(Oxidation (M))LE_ REV__ENST00000604665.1_1_19:58379289-58379556:+|nuORF 0.7936320650641473 0.38822285293237185 2 H 1 -1 4.6041 0 0 0.4696 0 0 693.4175110679233 146.9354189508422 840.3529300187655 0 0 0 0 0 0 0 0 0 H 0.4696 - 2 + NaN NaN 112844.9 NaN 20382 4709 25091 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25095 99.029 NaN 1117900 35 0 121610 0.327 -1 0 54 595.300237975155 594.292961508555 1 595.3003540039062 MULTI HCD FTMS 0 0 0 25094 491752.34375 0.12357600070011408 17 -0.25787353515625 1 NaN NaN 2 [Y{I|L}]EP 4 -1 20.379 0 0 3.4291 0 0 0 89.02767765529248 89.02767765529248 0.2018122933698443 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]EP 3.4291 - 17 NaN NaN 263370 NaN 20383 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25096 99.033 NaN 281840 35 0 53199 0.261 + -1 LMETRDALF 9 49 556.2776325455607 1110.5407121579212 2 556.2784423828125 MULTI HCD FTMS 0 0 0 25094 230073.703125 0.317032893166237 11 -0.14720916748046875 2 Oxidation (M) _LM(Oxidation (M))ETRDALF_ REV__ENST00000420250.1_2_2:190526231-190530834:+|nuORF;REV__ENST00000605941.5_1_2:190528642-190530834:+|nuORF;REV__nc|ENSG00000286053|L0R819|ASDURF 18.1463463914782 0.20357593197100715 2 HDW{I|L}{M(Oxidation (M))|F} 5 -1 54.196 0 0 4.8801 0 0 394.21995742011876 0 394.21995742011876 0 40.38364391835536 0 0 0 1.5 0 0.4247425010840047 0 HDW{I|L}{M(Oxidation (M))|F} 4.8801 - 111 NaN NaN 131043.6 NaN 20384 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25097 99.037 NaN 104160 35 0 22494 0.261 + 12068 KKAMEEEAL 9 37 524.772921034715 NaN 0 524.7726440429688 PEAK HCD FTMS 0 0 0 25094 39832.94921875 0.4032926382458626 -9 0.10472869873046875 3 Unmodified _KKAMEEEAL_ REV__ENSG00000139537|ENST00000320516|CCDC65;REV__nc|ENSG00000139537|Q8IXS2-2|CCDC65 6.2057823575117 0.2651744870083793 2 A 1 -1 11.99 0 0 1.1446 0 0 131.09651512952445 842.3769271103776 973.4734422399019 0 0 0 0 0 0.5 0 0 0 A 1.1446 + + 4 + NaN NaN 108410.6 NaN 20385 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25098 99.04 NaN 142780 35 0 29886 0.261 + 32463 WECSLMIF 8 32 514.7324616263908 1027.4503703195815 2 514.732421875 MULTI HCD FTMS 0 0 0 25094 52078.90625 0.11998287074924849 -14 0.21892547607421875 4 Unmodified _WECSLMIF_ REV__ENSG00000283703|ENST00000686984|VSIG10L2;REV__nc|ENSG00000283703|P0DP72|VSIG10L2 9.347437153973935 0.5250182646323369 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.5275 0 0 749.2856277698321 0 749.2856277698321 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.5275 + + 2 NaN NaN 128436 NaN 20386 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25099 99.043 NaN 86246 35 0 14173 0.261 -1 0 41 637.3725878796358 636.3653114130358 1 638.26171875 MULTI HCD FTMS 0 0 0 25094 5026.4052734375 0.35487696680467257 -2 0.03203582763671875 5 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 118001.2 NaN 20387 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25100 99.047 NaN 38256 35 0 5516.3 0.262 -1 0 29 547.2511709819936 546.2438945153935 1 547.2518920898438 MULTI HCD FTMS 0 0 0 25094 12588.8818359375 0.05032476004357836 -24 0.38409423828125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101679.8 NaN 20388 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25101 99.05 NaN 158070 35 0 15274 0.261 + 33802 YLHEEFPES 9 52 575.75460422981 NaN 0 575.7542724609375 PEAK HCD FTMS 0 0 0 25094 4839.4990234375 0.2972666674344803 1 -0.02593231201171875 7 Unmodified _YLHEEFPES_ ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF 4.75600775471527 0.27219989241163056 2 T{M(Oxidation (M))|F}G 3 8 8.1876 0 0 0.71228 0 0 180.99466880942606 660.3292330377561 841.3239018471822 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}G 0.71228 - 31 + NaN NaN 118066.1 NaN 20389 4710 25094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25103 99.055 NaN 179130 35 0 23396 0.327 + 31722 VYLFLHRH 8 47 542.8063440631805 1083.598135193161 2 542.8062133789062 MULTI HCD FTMS 0 0 0 25102 88063.9609375 0.6949054020847556 4 -0.04077911376953125 1 Unmodified _VYLFLHRH_ SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|45|1|anti-sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|56|1|anti-sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|50|1|anti-sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|71|3|anti-sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|53|2|anti-sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|50|1|anti-sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|68|2|anti-sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|49|1|anti-sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|62|2|anti-sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|74|3|anti-sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|48|1|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|48|1|anti-sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|35|2|anti-sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|66|3|anti-sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|73|3|anti-sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|46|1|anti-sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|48|1|anti-sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|40|1|anti-sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|72|3|anti-sense 19.438996006549623 0.45076845602799126 2 VY{I|L}{I|L}T{M(Oxidation (M))|F}P 7 4 80.368 0 0 7.4167 0 0 0 247.10581384830314 247.10581384830314 49.1697230401779 0 0 0 0 1.829689690656103 2 0 0 VY{I|L}{I|L}T{M(Oxidation (M))|F}P 7.4167 - 346 + NaN NaN 117637.8 NaN 20390 4711 25102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25105 99.062 NaN 720830 35 0 173480 0.327 + 16655 LWFWWSLSF 9 48 636.3191151008768 NaN 0 636.3192138671875 PEAK HCD FTMS 0 0 0 25104 555182.625 0.7627415798875566 5 -0.0587310791015625 1 Unmodified _LWFWWSLSF_ REV__ENSG00000130714|ENST00000402686|POMT1;REV__ENST00000462375.5_1_9:134384326-134385572:+|nuORF;REV__nc|ENSG00000130714|Q9Y6A1-3|POMT1;REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1;REV__nc|ENSG00000130714|Q9Y6A1|POMT1 42.09456458481378 0.07155800144855468 2 S{I|L}{I|L}G 4 -1 39.993 0 0 3.1475 0 0 165.08059826289133 732.2985323541624 897.3791306170538 0 0 0 0 0 1.3807196863200843 0 0.4247425010840047 0 S{I|L}{I|L}G 3.1475 - 48 + NaN NaN 224330 NaN 20391 4712 25104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25106 99.066 NaN 52296 35 0 15101 0.261 + -1 NCKRHLFCD 9 33 625.281362910146 NaN 0 625.281005859375 PEAK HCD FTMS 0 0 0 25104 30171.22265625 0.6184400321589364 -12 0.1573486328125 2 2 Carbamidomethyl (C) _NC(Carbamidomethyl (C))KRHLFC(Carbamidomethyl (C))D_ REV__ENSG00000106462|ENST00000320356|EZH2 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99102.3 NaN 20392 4712 25104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25107 99.069 NaN 78805 35 0 12377 0.261 + 7328 FVAEFSVPLL 10 34 561.3159554901032 1120.6173580470063 2 561.3165283203125 MULTI HCD FTMS 0 0 0 25104 15729.072265625 0.29764546486858157 23 -0.33286285400390625 3 Unmodified _FVAEFSVPLL_ ENSG00000169777|ENST00000382492|TAS2R1 6.723162845929126 0.4397169348982109 2 V 1 9 16.237 0 0 1.4489 0 0 341.23248363470003 677.28891366797 1018.52139730267 0 0 0 0 0 0.9247425010840047 0 0 0 + V 1.4489 + + 4 + NaN NaN 103486.6 NaN 20393 4712 25104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25108 99.073 NaN 43721 35 0 5735.6 0.261 + -1 RLRNHLSLL 9 32 582.354192284958 NaN 0 582.7340087890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))RLRNHLSLL_ REV__CLEC18C|p.F49L|1|0.1|ENSG00000157335|chr16:70174969-70174969|C/G|missense_variant;REV__ENSG00000140839|ENST00000682950|CLEC18B;REV__ENSG00000157322|ENST00000288040|CLEC18A;REV__ENSG00000157335|ENST00000541793|CLEC18C;REV__ENST00000564976.5_1_16:70208088-70217795:+|nuORF;REV__ENST00000569201.6_1_16:70208088-70217386:+|nuORF;REV__ENST00000569268.5_1_16:70208157-70217386:+|nuORF;REV__nc|ENSG00000140839|Q6UXF7-2|CLEC18B;REV__nc|ENSG00000140839|Q6UXF7|CLEC18B;REV__nc|ENSG00000157335|Q8NCF0-2|CLEC18C 0.45834013312273997 0.29302578994899664 2 {I|L} 1 -1 0.088644 0 0 0.007624 0 0 485.75890839628465 560.8423555963499 1046.6012639926346 0 0 0 0 0 0 0 0 0 {I|L} 0.007624 + + 1 + NaN NaN 102178.5 NaN 20394 4712 25104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25109 99.076 NaN 39230 35 0 5091.3 0.261 + 6587 FPLEKPIVF 9 29 545.3212280273438 NaN 0 545.3212280273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _FPLEKPIVF_ REV__ENSG00000009307|ENST00000358528|CSDE1;REV__nc|ENSG00000009307|O75534-2|CSDE1;REV__nc|ENSG00000009307|O75534-3|CSDE1;REV__nc|ENSG00000009307|O75534-4|CSDE1 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98582.5 NaN 20395 4712 25104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25112 99.088 NaN 135460 35 0 15755 0.412 + -1 IYEYVMHQL 9 57 606.2913288335012 1210.5681047338023 2 606.2908325195312 MULTI HCD FTMS 0 0 0 25111 61186.50390625 0.12110038655650023 19 -0.28607940673828125 1 Oxidation (M) _IYEYVM(Oxidation (M))HQL_ REV__ENSG00000187240|ENST00000375735|DYNC2H1;REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 19.256988751693697 0.19398022840297344 2 {I|L}YE{[ET]|[MV]}Q{I|L} 7 -1 63.078 0 0 5.2106 0 0 0 331.1046236627563 331.1046236627563 31.60728139283883 0 0 0 0 1.3494850021680094 2 0.3252574989159953 0 {I|L}YE{[ET]|[MV]}Q{I|L} 5.2106 - 130 + NaN NaN 143968.1 NaN 20396 4714 25111 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25114 99.095 NaN 287550 35 0 53144 0.327 -1 MIYPACFVL 9 48 586.2796454773825 1170.5447380215649 2 586.2806396484375 MULTI HCD FTMS 0 0 0 25113 175964.953125 0.37490479869188625 8 -0.1096343994140625 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4 -1 46.186 0 0 3.9457 0 0 646.2471790998062 0 646.2471790998062 0 24.75895023531386 0 0 0 1.4247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 3.9457 - 53 NaN NaN 149866.3 NaN 20397 4715 25113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25115 99.1 NaN 77591 35 0 10859 0.261 + 28974 TYAPLFSLPSF 11 33 621.8239752625715 NaN 0 621.82421875 PEAK HCD FTMS 0 0 0 25113 31659.58984375 0.5158067855676143 8 -0.1096343994140625 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 28.494509381512117 0.19052665381949951 2 {I|L}S{M(Oxidation (M))|F} 3 8 31.22 0 0 2.5144 0 0 349.1656219500026 542.2605684869749 891.4261904369775 0 0 0 0 0 1.5 0 0.4247425010840047 0 {I|L}S{M(Oxidation (M))|F} 2.5144 - 23 + NaN NaN 128750.6 NaN 20398 4715 25113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25117 99.105 NaN 136000 35 0 21657 0.327 + 30467 VLSLFPIASW 10 40 566.823515035747 1131.632477138294 2 566.2982177734375 MULTI HCD FTMS 0 0 0 25116 10877.9287109375 0.3291727847872336 -18 0.25586700439453125 1 Unmodified _VLSLFPIASW_ ENSG00000091138|ENST00000340010|SLC26A3 6.2057823575117 0.44245551207394906 2 NPV{M(Oxidation (M))|F} 4 9 28.404 0 0 2.51 0 0 656.3881056556753 0 656.3881056556753 0 12.206225184280797 0 0 0 0.4247425010840047 0 0 0 NPV{M(Oxidation (M))|F} 2.51 - 49 + NaN NaN 109784 NaN 20399 4716 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25118 99.109 NaN 151120 35 0 24215 0.261 + 15726 LPEYLPFVL 9 42 545.8127449099949 1089.6109368867897 2 545.812255859375 MULTI HCD FTMS 0 0 0 25116 46117.86328125 0.02998424212243266 -21 0.30438232421875 2 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 25.969 0 0 2.3833 0 0 859.4464491283845 0 859.4464491283845 0 11.365006360318688 0 0 0 0.5 0 0 0 + V{I|L} 2.3833 + + 10 NaN NaN 120404.8 NaN 20400 4716 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25119 99.113 NaN 45466 35 0 6620.8 0.261 + 23537 RNRSLDAQTID 11 34 644.8323364257812 NaN 0 644.8323364257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RNRSLDAQTID_ REV__ENSG00000077454|ENST00000310300|LRCH4;REV__ENST00000485583.1_1_7:100179936-100183723:-|nuORF 2.9952420565917617 0.33362350433860827 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92250.9 NaN 20401 4716 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25120 99.116 NaN 51935 35 0 9159.6 0.261 + 1121 AYLACLFPRF 10 34 600.8175789855043 NaN 0 600.8172607421875 PEAK HCD FTMS 0 0 0 25116 13835.314453125 0.7100159760788815 1 -0.01596832275390625 4 Unmodified _AYLACLFPRF_ REV__ENSG00000104290|ENST00000240093|FZD3;REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant 15.847184025352803 0.31427456382696234 2 {I|L} 1 -1 16.237 0 0 1.3535 0 0 852.4364142192522 231.0771425836547 1083.513556802907 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.3535 + + 7 + NaN NaN 116448.8 NaN 20402 4716 25116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25123 99.128 NaN 174540 35 0 11928 0.327 + -1 KRRQLCVRKLM 11 61 510.6342607216871 1528.8809527652613 3 510.9689025878906 MULTI HCD FTMS 0 0 0 25122 55620.8828125 0.43797697731560403 -9 0.10868072509765625 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 1.214830529360525 0.41359283248740725 2 Q 1 -1 9.6041 0 0 0.62818 0 0 854.5134733724864 543.3000582330686 1397.813531605555 0 0 0 0 0 0.5 0 0 0 Q 0.62818 + + 15 + NaN NaN 117515.4 NaN 20403 4718 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25124 99.132 NaN 274990 35 0 48124 0.261 -1 MIYPACFVL 9 58 586.2796454773825 1170.5447380215649 2 586.2802734375 MULTI HCD FTMS 0 0 0 25122 42176.17578125 0.08985909074536425 11 -0.191314697265625 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 VPD{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 8 -1 53.898 0 0 4.6046 0 0 222.01394850898595 0 222.01394850898595 0 27.700447748207075 0 0 0 1.4247425010840047 0 0 0 VPD{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}V{I|L} 4.6046 - 104 NaN NaN 145411 NaN 20404 4718 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25125 99.135 NaN 214120 35 0 45127 0.261 + 25542 SFLPTSPLLGF 11 55 589.8264525501278 1177.6383521670555 2 589.826171875 MULTI HCD FTMS 0 0 0 25122 73421.9375 0.37728854937855033 -1 0.00720977783203125 3 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 51.629811660486645 0.07472562200723704 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]S[{I|L}P]{I|L}G{M(Oxidation (M))|F} 11 0 + 69.327 0 0 5.887 5.887 93.407 0 0 0 24.35728569561438 62.33729180527345 24.35728569561438 69.32699184863364 0 1.7059771852360797 1.6989700043360187 0.3807196863200844 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[TP]S[{I|L}P]{I|L}G{M(Oxidation (M))|F} 5.887 + + 84 NaN NaN 124438.4 NaN 20405 4718 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25126 99.139 NaN 97560 35 0 8695 0.261 + 20323 NYQMNDSSWV 10 45 622.2577412760681 NaN 0 622.2571411132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NYQMNDSSWV_ ENSG00000205189|ENST00000455036|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-4|ZBTB10;ZBTB10|p.K777Nfs*13|1|0.24|ENSG00000205189|chr8:80519238-80519238|A/-|frameshift_variant 3.5964929083625545 0.337106189561315 2 {I|L}[R{M(Oxidation (M))|F}]S{I|L} 5 8 12.218 0 0 0.98338 0 0 276.98446340975494 346.1406649225219 623.1251283322769 0 0 0 0 0 0 0 0 0 {I|L}[R{M(Oxidation (M))|F}]S{I|L} 0.98338 - 26 + NaN NaN 123048.5 NaN 20406 4718 25122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25128 99.144 NaN 882990 35 0 176260 0.327 + 31748 VYLLTFPPL 9 55 531.8152570383778 1061.6159611435555 2 531.8154907226562 MULTI HCD FTMS 0 0 0 25127 639523.4375 0.6197037619339475 12 -0.20471954345703125 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 105.19 0 0 9.9082 9.9082 96.561 0 0 0 19.621892823592972 92.88032523080815 19.621892823592972 16.505149978319906 0 2.774227503252014 1.3979400086720375 1.1861818737241734 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L};[YV][VP]{I|L}[YV]P{I|L} 9.9082;8.3535;7.9949;6.2713;3.2591 +;-;-;-;- + 361 NaN NaN 227074.6 NaN 20407 4719 25127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25129 99.148 NaN 64720 35 0 16534 0.261 + 12041 KIHGCSSSS 9 26 453.2096088011573 NaN 0 453.20941162109375 PEAK HCD FTMS 0 0 0 25127 38813.8125 0.8157756613975548 11 -0.19181060791015625 2 Unmodified _KIHGCSSSS_ ENST00000414369.2_1_2:53984069-54014663:-|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90507 NaN 20408 4719 25127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25130 99.152 NaN 105130 35 0 9765.2 0.261 + -1 GFSALLCLHD 10 38 566.7755008294545 1131.5364487257089 2 566.7752685546875 MULTI HCD FTMS 0 0 0 25127 21531.6484375 0.5924625370040395 20 -0.29875946044921875 3 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 5.731851221503515 0.44496410492002586 2 VSW 3 -1 26.682 0 0 2.3581 0 0 741.3401966779312 0 741.3401966779312 0 19.69273760456403 0 0 0 0.5 0 0 0 VSW 2.3581 - 21 NaN NaN 117224.6 NaN 20409 4719 25127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25132 99.157 NaN 764300 35 0 84170 0.327 -1 0 56 595.300237975155 594.292961508555 1 595.3003540039062 MULTI HCD FTMS 0 0 0 25131 341741.21875 0.08587862086322356 27 -0.40618896484375 1 NaN NaN 2 [Y{I|L}]E 3 -1 18.53 0 0 3.1179 0 0 0 186.0807882414301 186.0807882414301 8.07196863200844 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]E 3.1179 - 8 NaN NaN 210633 NaN 20410 4720 25131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25133 99.161 NaN 108690 35 0 12873 0.261 + -1 LCSFLLPDF 9 43 556.2776325455607 1110.5407121579212 2 556.2787475585938 MULTI HCD FTMS 0 0 0 25131 43160.28515625 0.05947324656017544 21 -0.31482696533203125 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))SFLLPDF_ REV__ENSG00000154864|ENST00000674853|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5-4|PIEZO2;REV__nc|ENSG00000154864|Q9H5I5|PIEZO2 12.531546534597751 0.2520865569484384 2 {M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F} 4 -1 45.745 0 0 4.1192 0 0 499.25395400215 0 499.25395400215 0 31.281446971601312 0 0 0 1.3807196863200843 0 0 0 {M(Oxidation (M))|F}W{I|L}{M(Oxidation (M))|F} 4.1192 - 26 NaN NaN 126546.7 NaN 20411 4720 25131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25134 99.165 NaN 123220 35 0 11957 0.261 + 12011 KGSGGNAG 8 35 647.3095632867673 646.3022868201673 1 647.3099975585938 MULTI HCD FTMS 0 0 0 25131 27232.611328125 0.3722345299892989 -4 0.05185699462890625 3 Unmodified _KGSGGNAG_ ENSG00000144355|ENST00000361725|DLX1;ENST00000550686.1_1_2:172952281-172952982:+|nuORF 0 0.5419923896992614 2 M 1 8 3.9794 0 0 0.61572 0 0 71.9593435602048 440.2806795709594 512.2400231311642 0 0 0 0 0 0 0 0 0 M 0.61572 - 3 + NaN NaN 126523 NaN 20412 4720 25131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25135 99.168 NaN 113020 35 0 28263 0.261 + 17991 MLDWVPIHF 9 33 579.2931311837608 NaN 0 579.2928466796875 PEAK HCD FTMS 0 0 0 25131 26221.5546875 0.417402037291057 21 -0.31482696533203125 4 Unmodified _MLDWVPIHF_ ENSG00000204852|ENST00000397659|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;ENST00000460357.1_1_12:111082772-111083018:+|nuORF;ENST00000463313.1_1_12:111078308-111085046:+|nuORF;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1 2.0597508629832335 0.2852655770354268 2 {M(Oxidation (M))|F} 1 8 2.4743 0 0 0.21393 0 0 653.4364382934997 353.03547083072505 1006.4719091242248 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.21393 + + 1 + NaN NaN 113315.9 NaN 20413 4720 25131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25136 99.171 NaN 36241 35 0 5122 0.261 + 1431 AYQPDIRWF 9 29 598.3004150390625 NaN 0 598.3004150390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _AYQPDIRWF_ REV__ENSG00000129654|ENST00000322957|FOXJ1 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106680 NaN 20414 4720 25131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25138 99.176 NaN 638990 35 0 125880 0.327 -1 WMGTCLLF 8 53 514.7324616263908 1027.4503703195815 2 514.73291015625 MULTI HCD FTMS 0 0 0 25137 239361.796875 0.5514577322130493 -3 0.04817962646484375 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WM(Oxidation (M))GTCLLF_ ENSG00000160310|ENST00000355680|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-4|PRMT2;nc|ENSG00000160310|P55345-7|PRMT2;PRMT2|p.M222I|1|0.14|ENSG00000160310|chr21:46658756-46658756|G/C|missense_variant 34.18733598223924 0.30560024141787767 2 {I|L}TC(Carbamidomethyl (C)){I|L}{M(Oxidation (M))|F} 5 -1 48.8 0 0 4.7496 0 0 375.1287785337542 0 375.1287785337542 0 37.830918867322296 0 0 0 1 0 0.6861818737241735 0 {I|L}TC(Carbamidomethyl (C)){I|L}{M(Oxidation (M))|F} 4.7496 - 113 + NaN NaN 194048.1 NaN 20415 4721 25137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25139 99.181 NaN 248400 35 0 89717 0.261 + 22182 QLERDQFL 8 51 524.772921034715 NaN 0 524.7728881835938 PEAK HCD FTMS 0 0 0 25137 57861.6328125 0.5858258303199468 2 -0.02913665771484375 2 Unmodified _QLERDQFL_ REV__ENSG00000114923|ENST00000358055|SLC4A3;REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF;REV__nc|ENSG00000114923|P48751-2|SLC4A3;REV__nc|ENSG00000114923|P48751-3|SLC4A3 12.531546534597751 0.38822285293237185 2 A{I|L} 2 -1 15.969 0 0 1.5245 0 0 131.09523136618617 729.2914522760374 860.3866836422235 0 0 0 0 0 0.5 0 0 0 A{I|L} 1.5245 - 7 + NaN NaN 128802.8 NaN 20416 4721 25137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25140 99.184 NaN 84814 35 0 8144.4 0.261 + 30496 VLYVFFFPV 9 34 565.8160710128105 NaN 0 565.8162841796875 PEAK HCD FTMS 0 0 0 25137 21462.54296875 0.4491440089619353 -16 0.20665740966796875 3 Unmodified _VLYVFFFPV_ REV__ENSG00000183269|ENST00000537935|OR52E8 14.581692164780916 0.22376707489839515 2 {I|L} 1 -1 15.485 0 0 1.3708 0 0 361.2004270824585 652.3129366510374 1013.5133637334959 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.3708 + + 13 + NaN NaN 102576.4 NaN 20417 4721 25137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25141 99.187 NaN 35496 35 0 5201 0.261 + 33734 YLEDEFLLPG 10 25 598.2986654936667 NaN 0 598.340576171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YLEDEFLLPG_ REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF 1.6526216038709556 0.33876987398426067 2 M 1 -1 6.9897 0 0 0.58512 0 0 633.2157259074521 427.3031099908813 1060.5188358983335 0 0 0 0 0 0 0 0 0 M 0.58512 - 3 + NaN NaN 92499.7 NaN 20418 4721 25137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25143 99.192 NaN 686390 35 0 159910 0.326 -1 0 55 636.3189547562791 1270.6233565793582 2 636.319091796875 MULTI HCD FTMS 0 0 0 25142 222894.15625 0.35121661082250993 3 -0.0452880859375 1 NaN NaN 2 EG{I|L}{I|L}S{M(Oxidation (M))|F} 6 -1 67.044 0 0 5.2765 0 0 606.2778187482437 0 606.2778187482437 0 44.368128451160516 0 0 0 1.6421590589602533 0 1.274227503252014 0 EG{I|L}{I|L}S{M(Oxidation (M))|F} 5.2765 - 169 NaN NaN 191058.6 NaN 20419 4722 25142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25144 99.197 NaN 198530 35 0 38307 0.261 -1 LPEPRRKGC 9 46 556.8036605968324 1111.5927682604647 2 556.80419921875 MULTI HCD FTMS 0 0 0 25142 52428.63671875 0.23962625339432694 -15 0.20272064208984375 2 Carbamidomethyl (C) _LPEPRRKGC(Carbamidomethyl (C))_ ENST00000524465.5_3_2:17935566-17941221:+|nuORF;ENST00000532257.1_3_2:17935566-17941189:+|nuORF 10.073929032068715 0.27331982688540024 2 {I|L}PEY{I|L}P 6 -1 36.885 0 0 3.3183 0 0 0 396.1901033990844 396.1901033990844 18.385540741363187 0 0 0 0 0.9489700043360187 0 0.3494850021680094 0 {I|L}PEY{I|L}P 3.3183 - 74 + NaN NaN 132308.2 NaN 20420 4722 25142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25145 99.2 NaN 99758 35 0 5918.5 0.261 + 27483 SYYGPLNLLTF 11 46 644.3346538327479 1286.6547547322957 2 644.8351440429688 MULTI HCD FTMS 0 0 0 25142 18466.0078125 0.003511863338347426 -15 0.20272064208984375 3 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 44.94466952835103 0.1051048332168363 2 {M(Oxidation (M))|F}G[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 9 3 66.52 0 0 5.17 0 0 266.12547499824376 0 266.12547499824376 0 58.44843468456581 0 0 0 2.110924374808178 0 0 0.3807196863200844 {M(Oxidation (M))|F}G[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 5.17 - 211 NaN NaN 118525.3 NaN 20421 4722 25142 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25147 99.205 NaN 123360 35 0 35910 0.327 + 35280 YVVFSLLWG 9 41 542.2957540422009 NaN 0 542.29638671875 PEAK HCD FTMS 0 0 0 25146 49404.734375 0.36310661594348775 -9 0.11710357666015625 1 Unmodified _YVVFSLLWG_ ENSG00000068650|ENST00000375645|ATP11A;ENST00000495930.1_1_13:113527892-113530303:+|nuORF 11.640296217721598 0.23883959125015683 2 E{I|L}{I|L}A 4 7 18.928 0 0 1.7484 0 0 132.08923650061416 521.2385347955686 653.3277712961828 0 0 0 0 0 0 0 0 0 E{I|L}{I|L}A 1.7484 - 27 + NaN NaN 104382.9 NaN 20422 4723 25146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25148 99.21 NaN 84744 35 0 7130.3 0.261 -1 PCLELVVLQM 10 42 622.3271550025997 NaN 0 622.3167724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))PC(Carbamidomethyl (C))LELVVLQM_ MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|8|2|sense 5.731851221503515 0.33527861879838866 2 {I|L}[CS]{I|L}S{I|L}{M(Oxidation (M))|F} 7 -1 17.836 0 0 1.4353 0 0 277.1315916440681 199.11263452701408 476.24422617108223 0 0 0 0 0 0 0 0 0 {I|L}[CS]{I|L}S{I|L}{M(Oxidation (M))|F} 1.4353 - 88 + NaN NaN 108484.3 NaN 20423 4723 25146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25150 99.215 NaN 923420 35 0 148440 0.327 + 28321 TMFGEFILL 9 61 535.7830954191597 1069.5516379051194 2 535.7832641601562 MULTI HCD FTMS 0 0 0 25149 518908.84375 0.33549097773199615 -13 0.160064697265625 1 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 36.472 0 0 3.41 0 0 565.2202625959 0 565.2202625959 0 12.281337341946177 0 0 0 1.055462187404089 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.41 + + 62 NaN NaN 229767.7 NaN 20424 4724 25149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25151 99.219 NaN 160000 35 0 29507 0.261 -1 MFGTLLLY 8 40 508.26103880131313 1014.5075246694263 2 508.2521057128906 MULTI HCD FTMS 0 0 0 25149 18805.203125 0.8928528937219826 1 -0.02272796630859375 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))FGTLLLY_ ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103443606-103451020:-|nuORF 5.760428011301431 0.5334459684533844 2 Y{I|L} 2 -1 25.969 0 0 2.5598 0 0 720.348441886714 0 720.348441886714 0 25.969100130080562 0 0 0 0.5 0 0 0 Y{I|L} 2.5598 - 2 NaN NaN 115920.6 NaN 20425 4724 25149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25152 99.223 NaN 130240 35 0 12268 0.261 -1 MIYPACFVL 9 53 586.2796454773825 1170.5447380215649 2 586.2802734375 MULTI HCD FTMS 0 0 0 25149 91948.9296875 0.19590318618696015 17 -0.25653839111328125 3 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))IYPAC(Carbamidomethyl (C))FVL_ ENSG00000108510|ENST00000397786|MED13;ENST00000578132.1_1_17:60106900-60108988:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant 14.581692164780916 0.23437375358055648 2 {M(Oxidation (M))|F}V{I|L} 3 -1 35.445 0 0 3.0281 0 0 793.3119374005875 0 793.3119374005875 0 8.022562268522577 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}V{I|L} 3.0281 + + 29 NaN NaN 109053.8 NaN 20426 4724 25149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25153 99.226 NaN 89807 35 0 12137 0.261 + -1 IYEYVMHQL 9 30 606.2913288335012 1210.5681047338023 2 606.2909545898438 MULTI HCD FTMS 0 0 0 25149 54781.484375 0.10842356582615156 28 -0.433929443359375 4 Oxidation (M) _IYEYVM(Oxidation (M))HQL_ REV__ENSG00000187240|ENST00000375735|DYNC2H1;REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 10.823927491677226 0.26684000660059787 2 [Y{I|L}]E 3 -1 39.705 0 0 3.2799 0 0 0 802.3545278267186 802.3545278267186 14.527712246842484 0 0 0 0 0.9247425010840047 2 0 0 [Y{I|L}]E 3.2799 + + 12 + NaN NaN 101698.7 NaN 20427 4724 25149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25154 99.229 NaN 35234 35 0 5306.2 0.261 + 28118 TIIKKIKLLK 10 27 599.4365409207982 NaN 0 599.8025512695312 PEAK HCD FTMS 0 0 0 25149 16743.966796875 0.8994138903763288 6 -0.12061309814453125 5 Unmodified _TIIKKIKLLK_ tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1 0 0.34018428902965525 2 S 1 10 0.088644 0 0 0.0074064 0 0 533.5764987343713 573.2144869440061 1106.7909856783774 0 0 0 0 0 0 0 0 0 S 0.0074064 - 1 + NaN NaN 90785.9 NaN 20428 4724 25149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25155 99.233 NaN 33929 35 0 6095.1 0.262 + -1 PHMPICVK 8 23 499.25208704791885 NaN 0 499.2518615722656 PEAK HCD FTMS 0 0 0 25149 10413.2197265625 0.5032943336762217 4 -0.09146881103515625 6 Carbamidomethyl (C),Oxidation (M) _PHM(Oxidation (M))PIC(Carbamidomethyl (C))VK_ REV__ENST00000476768.1_1_1:11199309-11199676:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93038.2 NaN 20429 4724 25149 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25157 99.238 NaN 616930 35 0 133730 0.327 -1 0 53 546.7741050017111 1091.533657070222 2 546.7744750976562 MULTI HCD FTMS 0 0 0 25156 47818.70703125 0.22420578085718715 -12 0.15660858154296875 1 NaN NaN 2 SPE 3 -1 17.409 0 0 1.5949 0 0 760.4138050763687 0 760.4138050763687 0 0.9556125503637993 0 0 0 0 0 0.3252574989159953 0 SPE 1.5949 - 34 NaN NaN 193956 NaN 20430 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25158 99.242 NaN 160450 35 0 46140 0.261 + 35201 YVLFLRHH 8 45 542.8063440631805 1083.598135193161 2 542.8068237304688 MULTI HCD FTMS 0 0 0 25156 37086.15625 0.2926437789798549 18 -0.26316070556640625 2 Unmodified _YVLFLRHH_ ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF 14.581692164780916 0.48650662947107914 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P 7 4 58.153 0 0 5.3666 0 0 0 247.10608850650627 247.10608850650627 52.210609137860246 0 0 0 0 1.5941876774005248 1.6989700043360187 0 0 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P 5.3666 - 69 + NaN NaN 114386.8 NaN 20431 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25159 99.246 NaN 206240 35 0 18470 0.261 -1 0 45 572.4368841436072 571.4296076770072 1 572.4370727539062 MULTI HCD FTMS 0 0 0 25156 19631.65625 0.3443139127524572 1 -0.02953338623046875 3 NaN NaN 2 {I|L}{I|L}C{M(Oxidation (M))|F} 4 -1 21.771 0 0 3.8099 0 0 77.17244932915408 0 77.17244932915408 0 21.771081482726373 0 0 0 0 0 0 0 {I|L}{I|L}C{M(Oxidation (M))|F} 3.8099 - 14 + NaN NaN 136300.4 NaN 20432 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25160 99.249 NaN 141060 35 0 10414 0.261 + 17576 LYVPALSALW 10 47 566.823515035747 1131.632477138294 2 566.8233032226562 MULTI HCD FTMS 0 0 0 25156 38509.1953125 0.6985504500344267 1 -0.02953338623046875 4 Unmodified _LYVPALSALW_ ENSG00000146535|ENST00000275364|GNA12;ENST00000471281.5_1_7:2834552-2834702:-|nuORF;nc|ENSG00000146535|Q03113-2|GNA12;nc|ENSG00000146535|Q03113-3|GNA12 20.453626601364224 0.3197956946484955 2 SW 2 8 21.766 0 0 1.9234 0 0 840.5105726966909 0 840.5105726966909 0 3.8071968632008435 0 0 0 0.3807196863200844 0 0 0 SW 1.9234 - 27 + NaN NaN 113441.7 NaN 20433 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25161 99.252 NaN 89883 35 0 11464 0.261 + 28975 TYAPLFSLPSF 11 41 621.8239752625715 NaN 0 621.8240966796875 PEAK HCD FTMS 0 0 0 25156 12095.4912109375 0.19706308490306126 18 -0.26316070556640625 5 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 18.373094154950223 0.2691433934672084 2 S{I|L} 2 9 25.217 0 0 2.0309 0 0 692.3535633286435 346.1401461236938 1038.4937094523373 0 0 0 0 0 1.4247425010840047 0 0 0 + S{I|L} 2.0309 + + 23 + NaN NaN 105973.1 NaN 20434 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25162 99.256 NaN 93322 35 0 11839 0.261 + 2968 DYYQTYDR 8 44 562.2389402950388 1122.4633276568775 2 562.2390747070312 MULTI HCD FTMS 0 0 0 25156 10148.73828125 0.12522174629515115 -12 0.15660858154296875 6 Unmodified _DYYQTYDR_ REV__ENSG00000151465|ENST00000281141|CDC123;REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF 0.7936320650641473 0.540814922690045 2 VQ 2 -1 5.9691 0 0 0.53179 0 0 682.1651536840244 210.1492861383422 892.3144398223666 0 0 0 0 0 0 0 0 0 VQ 0.53179 - 7 + NaN NaN 101538.2 NaN 20435 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25163 99.259 NaN 42825 35 0 4919.6 0.261 + 24282 RYFLPPYTF 9 27 602.3134621125304 NaN 0 602.3121948242188 PEAK HCD FTMS 0 0 0 25156 14039.3095703125 0.6778308606018406 1 -0.02953338623046875 7 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.2057823575117 0.2651744870083793 2 T 1 8 5.4846 0 0 0.45605 0 0 165.07838636394064 933.4624117486936 1098.5407981126343 0 0 0 0 0 0 0 0 0 + T 0.45605 + + 1 + NaN NaN 98955.7 NaN 20436 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25164 99.262 NaN 29608 35 0 2816.5 0.261 + -1 EMLIHTYALM 10 29 619.2997780039311 NaN 0 619.2989501953125 PEAK HCD FTMS 0 0 0 25156 10004.2353515625 0.5131392177438947 1 -0.02953338623046875 8 Oxidation (M) _EM(Oxidation (M))LIHTYALM_ REV__ENSG00000182858|ENST00000330817|ALG12 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100326.5 NaN 20437 4725 25156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25166 99.267 NaN 998470 35 0 216930 0.327 + 15727 LPEYLPFVL 9 38 545.8127449099949 1089.6109368867897 2 545.8129272460938 MULTI HCD FTMS 0 0 0 25165 719477.1875 0.4677792216869193 -11 0.17154693603515625 1 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 34.10243960390752 0.09241788333544565 2 {I|L}P{M(Oxidation (M))|F}V{I|L} 5 4 55.701 0 0 5.112 0 0 502.24241835761876 0 502.24241835761876 0 55.70107520596089 0 0 0 1.9247425010840047 0 0 0 + {I|L}P{M(Oxidation (M))|F}V{I|L} 5.112 + + 41 NaN NaN 240208.2 NaN 20438 4726 25165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25167 99.272 NaN 580410 35 0 101930 0.261 + 10563 IPISIEFVF 9 52 532.8050616022899 1063.5955702713798 2 532.8052978515625 MULTI HCD FTMS 0 0 0 25165 156999.25 0.39449404914976466 -1 0.02953338623046875 2 Unmodified _IPISIEFVF_ ENSG00000115275|ENST00000448666|MOGS;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS 28.486842064014134 0.11819662193267319 2 P{M(Oxidation (M))|F}T[KP]V{M(Oxidation (M))|F} 7 6 56.573 0 0 5.319 0 0 229.1245142184485 0 229.1245142184485 0 24.78449602769162 0 0 0 1 0 1.086696871556164 0.8494850021680094 P{M(Oxidation (M))|F}T[KP]V{M(Oxidation (M))|F} 5.319 - 619 + NaN NaN 185970 NaN 20439 4726 25165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25168 99.275 NaN 242310 35 0 12404 0.261 + -1 KRRQLCVRKLM 11 65 510.6342607216871 1528.8809527652613 3 510.6344299316406 MULTI HCD FTMS 0 0 0 25165 107952.765625 0.7381310766610809 -8 0.13922882080078125 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.40826533853263924 0.41713015341995335 2 Q 1 -1 8.9794 0 0 0.58732 0 0 854.5146330404551 543.2997016373876 1397.8143346778427 0 0 0 0 0 0.5 0 0 0 Q 0.58732 + + 20 + NaN NaN 137173.7 NaN 20440 4726 25165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25169 99.279 NaN 197640 35 0 91239 0.261 + 30397 VLMENQLL 8 32 480.2653705275476 958.5161881218952 2 480.2659912109375 MULTI HCD FTMS 0 0 0 25165 4909.9091796875 0.14292802160152482 -3 0.06191253662109375 4 Unmodified _VLMENQLL_ ENST00000416132.5_1_2:3687900-3691705:+|nuORF 4.3292370932331545 0.5355693454741696 2 V{M(Oxidation (M))|F}P 3 6 29.45 0 0 3.0725 0 0 0 612.3048800104124 612.3048800104124 29.45046257204389 0 0 0 0 0.3252574989159953 0 0 0 V{M(Oxidation (M))|F}P 3.0725 - 3 + NaN NaN 107953.8 NaN 20441 4726 25165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25170 99.282 NaN 72467 35 0 16184 0.261 + 22746 QYFCAPAPLSP 11 26 597.2884775135652 NaN 0 597.6605834960938 PEAK HCD FTMS 0 0 0 25165 4590.56640625 0.9139576301504099 -1 0.02953338623046875 5 Unmodified _QYFCAPAPLSP_ ENSG00000108387|ENST00000672673|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000580791.1_1_17:56603756-56605258:-|nuORF;ENST00000580796.5_1_17:56603775-56604561:-|nuORF;ENST00000583273.5_1_17:56603775-56606703:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000584528.5_1_17:56603756-56609324:-|nuORF;ENST00000584789.1_1_17:56603775-56609324:-|nuORF;ENST00000585170.1_1_17:56603775-56604489:-|nuORF;nc|ENSG00000108387|O43236-2|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;nc|ENSG00000108387|O43236-6|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4 1.1933415558491238 0.338734977139133 2 M 1 11 5.4846 0 0 0.4599 0 0 632.1990239572231 426.30060754947505 1058.499631506698 0 0 0 0 0 0 0 0 0 M 0.4599 - 1 + NaN NaN 102618 NaN 20442 4726 25165 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25172 99.287 NaN 525100 35 0 101690 0.327 + 31749 VYLLTFPPL 9 42 531.8152570383778 1061.6159611435555 2 531.8155517578125 MULTI HCD FTMS 0 0 0 25171 294455.4375 0.28532987477985333 20 -0.27602386474609375 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 109.62928328672726 0.0030029239606406397 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L} 9 0 + 105.19 0 0 9.9082 9.9082 96.561 0 0 0 19.621892823592972 94.21835643169331 19.621892823592972 16.505149978319906 0 2.7302046884880937 1.3979400086720375 1.2302046884880937 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}PP{I|L};[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}P{I|L};[YV]{I|L}PV[YV]P{I|L} 9.9082;8.3535;7.9949;6.2298 +;-;-;- + 271 NaN NaN 171337 NaN 20443 4727 25171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25173 99.291 NaN 474880 35 0 52868 0.261 -1 0 42 595.300237975155 594.292961508555 1 595.3004150390625 MULTI HCD FTMS 0 0 0 25171 242867.796875 0.06103200405267039 34 -0.48076629638671875 2 NaN NaN 2 [Y{I|L}]E 3 -1 18.53 0 0 3.1179 0 0 0 186.08040143837567 186.08040143837567 8.07196863200844 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]E 3.1179 - 9 NaN NaN 156577.6 NaN 20444 4727 25171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25174 99.295 NaN 80550 35 0 12256 0.261 + 25543 SFLPTSPLLGF 11 36 589.8264525501278 1177.6383521670555 2 589.8269653320312 MULTI HCD FTMS 0 0 0 25171 38019.3671875 0.19536765690039615 8 -0.1080780029296875 3 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 20.41453444215458 0.279209903849948 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 3 8 30.686 0 0 2.6058 0 0 0 827.4310822298086 827.4310822298086 22.587418566968154 0 0 0 0 0.5 1.5228787452803376 0 0 + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L} 2.6058 + + 30 NaN NaN 100274.5 NaN 20445 4727 25171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25175 99.298 NaN 104290 35 0 8332.9 0.261 + 13621 KYPENFFLL 9 45 585.8132775532669 1169.6120021733336 2 585.8134155273438 MULTI HCD FTMS 0 0 0 25171 46444.6484375 0.605288761994205 -2 0.0491485595703125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.445 0 0 3.0305 0 0 778.3633900373062 0 778.3633900373062 0 25.268024924119672 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0305 + + 28 NaN NaN 103807.3 NaN 20446 4727 25171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25176 99.301 NaN 263600 35 0 51921 0.261 + -1 LPEVLYTMF 9 52 564.7864745644139 1127.5583961956277 2 564.7864379882812 MULTI HCD FTMS 0 0 0 25171 52540.94140625 1 0 0 5 Oxidation (M) _LPEVLYTM(Oxidation (M))F_ REV__ENSG00000205268|ENST00000401827|PDE7A;REV__nc|ENSG00000205268|Q13946-2|PDE7A 10.823927491677226 0.26684000660059787 2 {I|L}PE 3 -1 25.802 0 0 2.2883 0 0 0 785.3588235877424 785.3588235877424 20.316978991741976 0 0 0 0 0.3807196863200844 0 0.4247425010840047 0 {I|L}PE 2.2883 + + 7 + NaN NaN 125717 NaN 20447 4727 25171 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25178 99.306 NaN 167250 35 0 21372 0.327 -1 WMGTCLLF 8 34 514.7324616263908 1027.4503703195815 2 514.7327270507812 MULTI HCD FTMS 0 0 0 25177 52816.11328125 0.12168129766169744 4 -0.05495452880859375 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))WM(Oxidation (M))GTCLLF_ ENSG00000160310|ENST00000355680|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-4|PRMT2;nc|ENSG00000160310|P55345-7|PRMT2;PRMT2|p.M222I|1|0.14|ENSG00000160310|chr21:46658756-46658756|G/C|missense_variant 19.438996006549623 0.45076845602799126 2 {I|L}TC(Carbamidomethyl (C)){I|L}{M(Oxidation (M))|F} 5 -1 34.961 0 0 3.4027 0 0 375.12863549002344 0 375.12863549002344 0 23.99166239860314 0 0 0 0.8935078169319297 0 0.3807196863200844 0 {I|L}TC(Carbamidomethyl (C)){I|L}{M(Oxidation (M))|F} 3.4027 - 28 + NaN NaN 116753.7 NaN 20448 4728 25177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25179 99.311 NaN 110050 35 0 11956 0.261 + 10055 IFDVASIIL 9 34 495.7971527324902 989.5797525317804 2 495.7970275878906 MULTI HCD FTMS 0 0 0 25177 23073.181640625 0.07650939339766404 -9 0.16266632080078125 2 Unmodified _IFDVASIIL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 39.957323273324995 0.06554068735427583 2 AS{I|L}{I|L}{I|L} 5 4 57.563 0 0 5.8169 0 0 474.2476978986344 0 474.2476978986344 0 50.57319389984244 0 0 0 1.5 0 0.8494850021680094 0 + AS{I|L}{I|L}{I|L} 5.8169 + + 40 NaN NaN 119793.6 NaN 20449 4728 25177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25180 99.314 NaN 39616 35 0 4545.7 0.261 + 1672 CEEEEDCD 8 33 486.132742411898 NaN 0 486.1327209472656 PEAK HCD FTMS 0 0 0 25177 27790.619140625 0.49227485222548495 4 -0.05495452880859375 3 Unmodified _CEEEEDCD_ REV__ENSG00000176635|ENST00000336726|HORMAD2 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95919.3 NaN 20450 4728 25177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25182 99.319 NaN 290780 35 0 82603 0.327 -1 0 54 636.3189547562791 1270.6233565793582 2 636.3192138671875 MULTI HCD FTMS 0 0 0 25181 185253.09375 0.2919052021188182 10 -0.1232147216796875 1 NaN NaN 2 {I|L}S{M(Oxidation (M))|F} 3 -1 40.445 0 0 3.1831 0 0 905.4244695102667 0 905.4244695102667 0 33.455612550363796 0 0 0 1 0 0.4247425010840047 0 {I|L}S{M(Oxidation (M))|F} 3.1831 - 20 NaN NaN 135078.2 NaN 20451 4729 25181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25183 99.324 NaN 504330 35 0 120020 0.262 -1 LPEPRRKGC 9 68 556.8036605968324 1111.5927682604647 2 556.8040771484375 MULTI HCD FTMS 0 0 0 25181 155602.765625 0.7111859105651622 -8 0.14313507080078125 2 Carbamidomethyl (C) _LPEPRRKGC(Carbamidomethyl (C))_ ENST00000524465.5_3_2:17935566-17941221:+|nuORF;ENST00000532257.1_3_2:17935566-17941189:+|nuORF 25.399314129420986 0.14091189997036632 2 {I|L}PEY{I|L}P 6 -1 74.218 0 0 6.6768 0 0 0 396.1893404596313 396.1893404596313 61.11941264025134 0 0 0 0 1.774227503252014 1.5228787452803376 0.4247425010840047 0 {I|L}PEY{I|L}P 6.6768 - 293 + NaN NaN 176886.8 NaN 20452 4729 25181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25184 99.327 NaN 144240 35 0 18818 0.261 + 20765 PGLSEDMGFFN 11 48 607.2635913529657 1212.5126297727313 2 607.263671875 MULTI HCD FTMS 0 0 0 25181 52732.3046875 1 0 0 3 Unmodified _PGLSEDMGFFN_ REV__ENSG00000213445|ENST00000534313|SIPA1 8.155526934196011 0.3831532958467648 2 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 5 -1 39.157 0 0 3.2294 0 0 476.1892262189469 0 476.1892262189469 0 27.94190571133676 0 0 0 1.5 0 0 0 Y{M(Oxidation (M))|F}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 3.2294 - 79 NaN NaN 113933.4 NaN 20453 4729 25181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25185 99.331 NaN 192360 35 0 13937 0.261 -1 LPGMAGLPNVF 11 61 566.2977216563337 1130.5808903794673 2 566.2973022460938 MULTI HCD FTMS 0 0 0 25181 15199.896484375 0.2592141664384516 -17 0.25725555419921875 4 Oxidation (M) _LPGM(Oxidation (M))AGLPNVF_ ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7;nc|ENSG00000171316|Q9P2D1-4|CHD7 17.11289562659939 0.30797719109864646 2 {[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F} 10 -1 + 25.664 0 0 2.27 2.27 80.588 0 0 0 0.9936247538460883 9.466584062177436 0.9936247538460883 1.76091259055681 0 0.7302046884880937 0 0 0 {[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F};[YQ][{I|L}A]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F};[Y{I|L}][QA]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F};[Y{I|L}]V{[NV]|[RG]}{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{I|L}{[YD]|[{M(Oxidation (M))|F}M]}V{M(Oxidation (M))|F} 2.27;2.1143;1.848;1.4723;1.426 -;-;-;-;- 123 NaN NaN 126219.9 NaN 20454 4729 25181 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25187 99.336 NaN 865260 35 0 56492 0.327 + 27484 SYYGPLNLLTF 11 75 644.3346538327479 1286.6547547322957 2 644.3348388671875 MULTI HCD FTMS 0 0 0 25186 781151.4375 0.10736391358646834 -7 0.1302642822265625 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 240.78146321778172 3.5609682708451037E-40 2 {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 11 0 + 124.73 0 0 9.6941 9.6941 97.193 0 0 0 13.43894222739631 94.91313283748926 13.43894222739631 24.24289196921268 0 3.5994850021680094 0 2.0669015600442577 1.5114393726401687 + + {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[ET]|[MV]}H{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[TV]|[{I|L}S]}{[ET]|[MV]}H{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F} 9.6941;7.8099;4.6813;3.9718 +;-;-;- + 1801 NaN NaN 227309.8 NaN 20455 4730 25186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25188 99.34 NaN 128220 35 0 13379 0.263 + 8311 GYAFTLPLF 9 35 514.7760472427493 1027.5375415522985 2 514.7765502929688 MULTI HCD FTMS 0 0 0 25186 44888.125 0.3195559559960401 6 -0.0785675048828125 2 Unmodified _GYAFTLPLF_ ENSG00000253710|ENST00000521508|ALG11 28.486842064014134 0.11819662193267319 2 T{I|L}[{I|L}P]{M(Oxidation (M))|F} 5 4 41.026 0 0 3.9926 0 0 438.1919988366937 0 438.1919988366937 0 35.541134294324124 0 0 0 1.8807196863200843 0 0 0 + T{I|L}[{I|L}P]{M(Oxidation (M))|F} 3.9926 + + 27 + NaN NaN 112125.4 NaN 20456 4730 25186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25189 99.344 NaN 200880 35 0 27150 0.261 + -1 GFSALLCLHD 10 53 566.7755008294545 1131.5364487257089 2 567.2774658203125 MULTI HCD FTMS 0 0 0 25186 17073.044921875 0.3829884900146695 -17 0.25449371337890625 3 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 13.042465956692817 0.38911719078024076 2 [Y{I|L}]VVN[HD]SW 9 -1 + 32.558 0 0 2.8774 2.8774 83.311 0 0 0 4.181212380090223 11.185625271001175 4.181212380090223 7.958800173440753 0 0.9247425010840047 0 0 0 [Y{I|L}]VVN[HD]SW;[YQ][HD]{I|L}S[{I|L}A]W;[Y{I|L}][QA]{I|L}[HD]SW;{[CT]|[{M(Oxidation (M))|F}G]}[{I|L}A]S{I|L}[HD]SW;[Y{I|L}]VVGG[HD]SW;[YQ][HD]{I|L}[{I|L}A]SW;[YQ][{I|L}A]{I|L}[HD]SW;{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{I|L}[HD]SW;[Y{I|L}]V[PA]{I|L}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}EA[WD][{I|L}A]W 2.8774;2.174;2.174;2.1099;2.0636;1.9982;1.9982;1.934;1.6228;1.2 -;-;-;-;-;-;-;-;-;- 159 NaN NaN 138888.9 NaN 20457 4730 25186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25191 99.348 NaN 1782000 35 0 440290 0.327 + 28322 TMFGEFILL 9 68 535.7830954191597 1069.5516379051194 2 535.7833862304688 MULTI HCD FTMS 0 0 0 25190 914506.6875 0.5912574943117339 -6 0.1107940673828125 1 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 44.40701690623563 0.04511410083598184 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 43.047 0 0 4.0248 0 0 565.2196245943713 0 565.2196245943713 0 0.9319560784774694 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.0248 + + 128 NaN NaN 376007.9 NaN 20458 4731 25190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25192 99.353 NaN 240010 35 0 35721 0.261 + 30041 VFQNFPLLF 9 54 562.8105897247117 1123.6066265162233 2 562.8109741210938 MULTI HCD FTMS 0 0 0 25190 69817.2265625 0.20237368533946296 -13 0.220489501953125 2 Unmodified _VFQNFPLLF_ ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}[{I|L}P]{I|L}{M(Oxidation (M))|F} 5 4 24.208 0 0 2.1545 0 0 488.23814589668126 0 488.23814589668126 0 9.744237387763093 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F}[{I|L}P]{I|L}{M(Oxidation (M))|F} 2.1545 + + 17 NaN NaN 137994.7 NaN 20459 4731 25190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25193 99.356 NaN 117870 35 0 15021 0.261 + 11948 KFKFYEKFL 9 34 625.350759548129 NaN 0 625.28662109375 PEAK HCD FTMS 0 0 0 25190 4896.1083984375 0.7831416670545708 -1 0.012908935546875 3 Unmodified _KFKFYEKFL_ ENST00000263734.4_1_2:46613451-46613523:+|nuORF 2.0597508629832335 0.2852655770354268 2 {I|L} 1 8 6.9897 0 0 0.55976 0 0 653.3844143177848 479.1954872997749 1132.5799016175597 0 0 0 0 0 0 0 0 0 + {I|L} 0.55976 + + 7 + NaN NaN 105429.9 NaN 20460 4731 25190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25195 99.361 NaN 260050 35 0 53970 0.327 + 7724 FYLMQIVEI 9 56 578.3094351702135 1154.604317407227 2 578.3095703125 MULTI HCD FTMS 0 0 0 25194 126444.0390625 0.40850474299353673 -12 0.2047119140625 1 Unmodified _FYLMQIVEI_ ENSG00000137975|ENST00000370565|CLCA2 51.629811660486645 0.02929079705179888 2 Q{I|L}VE{I|L} 5 4 62.251 0 0 5.3915 0 0 554.2552635016501 0 554.2552635016501 0 46.05265951879794 0 0 0 1.7302046884880937 0 0 0.8494850021680094 + Q{I|L}VE{I|L} 5.3915 + + 169 NaN NaN 134103.1 NaN 20461 4732 25194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25196 99.366 NaN 107550 35 0 10211 0.261 + 5481 FITLTTIGF 9 38 506.78859951720943 NaN 0 506.77947998046875 PEAK HCD FTMS 0 0 0 25194 9090.984375 0.3047357217408793 -4 0.05495452880859375 2 Unmodified _FITLTTIGF_ ENSG00000124249|ENST00000372861|KCNK15;ENSG00000169427|ENST00000520439|KCNK9;ENSG00000171303|ENST00000302909|KCNK3 13.50788311687929 0.22978952576613207 2 E 1 9 8.5392 0 0 0.84416 0 0 131.0978994268649 748.3845867915061 879.4824862183709 0 0 0 0 0 0.3054621874040891 0 0 0 E 0.84416 - 16 + NaN NaN 106242.5 NaN 20462 4732 25194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25197 99.369 NaN 43297 35 0 10902 0.261 + 35539 YYGPLNLLTF 10 21 600.818946657316 1199.623340381432 2 600.81787109375 MULTI HCD FTMS 0 0 0 25194 28324.669921875 0.00494100380071413 -21 0.306488037109375 3 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 3.2813086475875832 0.45793521633868084 2 E 1 10 5.4846 0 0 0.45719 0 0 863.8826920433445 203.66948877506096 1067.5521808184055 0 0 0 0 0 0 0 0 0 E 0.45719 - 3 + NaN NaN 98262 NaN 20463 4732 25194 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25199 99.374 NaN 119610 35 0 10294 0.327 + 25544 SFLPTSPLLGF 11 59 589.8264525501278 1177.6383521670555 2 589.8264770507812 MULTI HCD FTMS 0 0 0 25198 6356.4130859375 0.03266328775979514 14 -0.18857574462890625 1 Unmodified _SFLPTSPLLGF_ ENST00000409443.6_1_2:172016940-172017408:-|nuORF 17.11289562659939 0.30797719109864646 2 [Y{M(Oxidation (M))|F}]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}CYE 8 8 28.594 0 0 2.4281 0 0 0 129.1287069316817 129.1287069316817 8.187587626244124 0 0 0 0 0 1.5228787452803376 0 0 [Y{M(Oxidation (M))|F}]{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}CYE 2.4281 - 113 NaN NaN 106255 NaN 20464 4733 25198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25200 99.379 NaN 52278 35 0 6002.6 0.261 + 28976 TYAPLFSLPSF 11 33 621.8239752625715 NaN 0 621.8238525390625 PEAK HCD FTMS 0 0 0 25198 7032.15673828125 0.11456984062908043 26 -0.35025787353515625 2 Unmodified _TYAPLFSLPSF_ ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 14.405379775768559 0.2999620844666639 2 {I|L}[VG]{M(Oxidation (M))|F}S{I|L} 6 8 26.643 0 0 2.1458 0 0 276.12456077729286 346.1406344049438 622.2651951822367 0 0 0 0 0 1.4247425010840047 0 0 0 {I|L}[VG]{M(Oxidation (M))|F}S{I|L} 2.1458 - 35 + NaN NaN 118997.5 NaN 20465 4733 25198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25201 99.382 NaN 61672 35 0 9489.8 0.263 + 30270 VKILVVVII 9 39 498.3638269390008 NaN 0 498.755615234375 PEAK HCD FTMS 0 0 0 25198 4857.451171875 0.2925918588188678 -4 0.0549774169921875 3 Unmodified _VKILVVVII_ REV__ENSG00000137648|ENST00000437212|TMPRSS4;REV__nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;REV__nc|ENSG00000137648|Q9NRS4-3|TMPRSS4 0.6014990680409731 0.29233206172879045 2 {M(Oxidation (M))|F}A 2 -1 5.0886 0 0 0.51157 0 0 514.5084938664797 259.0719088190063 773.580402685486 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}A 0.51157 - 4 + NaN NaN 98694.1 NaN 20466 4733 25198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25203 99.387 NaN 238020 35 0 18224 0.411 -1 RIFKPWKCRKK 11 87 516.3098717378437 1545.9077858137307 3 516.6446533203125 MULTI HCD FTMS 0 0 0 25202 60488.7265625 0.8435958174516762 -3 0.03868865966796875 1 Carbamidomethyl (C) _RIFKPWKC(Carbamidomethyl (C))RKK_ PHACTR3|p.W80C|1|0.14|ENSG00000087495|chr20:59743228-59743228|G/C|missense_variant 0 0.41892066650488113 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 0.94469 0 0 1380.8298114258384 0 1380.8298114258384 0 1.4165061435177506 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.94469 + + 79 + NaN NaN 178795.6 NaN 20467 4734 25202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25205 99.395 NaN 1434300 35 0 322550 0.327 + 15728 LPEYLPFVL 9 42 545.8127449099949 1089.6109368867897 2 545.8129272460938 MULTI HCD FTMS 0 0 0 25204 1070628.5 0.696085678805256 -2 0.0206298828125 1 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 26.88365393820708 0.12808753336095696 2 {I|L}P{M(Oxidation (M))|F}V{I|L} 5 4 50.701 0 0 4.6531 0 0 502.2444020001969 0 502.2444020001969 0 41.035312760830394 0 0 0 1.4247425010840047 0 0 0 + {I|L}P{M(Oxidation (M))|F}V{I|L} 4.6531 + + 52 NaN NaN 323252.7 NaN 20468 4735 25204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25206 99.399 NaN 376290 35 0 88435 0.261 + 10564 IPISIEFVF 9 52 532.8050616022899 1063.5955702713798 2 532.80517578125 MULTI HCD FTMS 0 0 0 25204 182713.421875 0.4591063819061425 8 -0.10593414306640625 2 Unmodified _IPISIEFVF_ ENSG00000115275|ENST00000448666|MOGS;ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS 36.04419817259434 0.08350412372117409 2 C(Carbamidomethyl (C)){M(Oxidation (M))|F}T[KP]V{M(Oxidation (M))|F} 7 7 51.648 0 0 4.8559 0 0 166.142946835636 0 166.142946835636 0 42.975446438902964 0 0 0 1 0 0.6694451763165201 0.7742275032520141 C(Carbamidomethyl (C)){M(Oxidation (M))|F}T[KP]V{M(Oxidation (M))|F} 4.8559 - 149 + NaN NaN 153015.7 NaN 20469 4735 25204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25207 99.403 NaN 260940 35 0 31730 0.261 + 25513 SFISGLFNF 9 69 516.2634380940242 1030.5123232548483 2 516.2636108398438 MULTI HCD FTMS 0 0 0 25204 57801.39453125 0.6696586094274912 -2 0.0206298828125 3 Unmodified _SFISGLFNF_ ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-2|ACLY 43.77239144664712 0.04802738721622131 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[VA]|[{I|L}G]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F} 9 0 + 45.168 0 0 4.383 4.383 86.065 0 0 0 3.65279269351241 36.126590506049325 3.65279269351241 9.208187539523749 0 2.079689690656103 0 0.4247425010840047 0 + + {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[VA]|[{I|L}G]}{M(Oxidation (M))|F}N{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}S{[VA]|[{I|L}G]}{M(Oxidation (M))|F}GG{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Q{I|L}]YN{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[Q{I|L}]YGG{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[{I|L}T]YN{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{I|L}[{I|L}T]YGG{M(Oxidation (M))|F} 4.383;3.4895;2.4876;1.5888;1.2071;0.30832 +;-;-;-;-;- + 91 NaN NaN 131985.2 NaN 20470 4735 25204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25208 99.406 NaN 152420 35 0 11661 0.261 + 17577 LYVPALSALW 10 53 566.823515035747 1131.632477138294 2 566.8233642578125 MULTI HCD FTMS 0 0 0 25204 42178.2265625 0.7651060716224459 11 -0.1608734130859375 4 Unmodified _LYVPALSALW_ ENSG00000146535|ENST00000275364|GNA12;ENST00000471281.5_1_7:2834552-2834702:-|nuORF;nc|ENSG00000146535|Q03113-2|GNA12;nc|ENSG00000146535|Q03113-3|GNA12 10.823927491677226 0.4098686510432541 2 SW 2 8 20.969 0 0 1.853 0 0 840.511579776769 0 840.511579776769 0 2.7815125038364386 0 0 0 0 0 0 0 SW 1.853 - 25 + NaN NaN 138032.8 NaN 20471 4735 25204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25209 99.409 NaN 101610 35 0 10672 0.261 -1 DYMNLLGMIF 10 45 624.7852094817596 1247.555866030319 2 624.7864379882812 MULTI HCD FTMS 0 0 0 25204 57521.4375 0.4165806091986098 -2 0.0206298828125 5 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.3684828712757339 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 37.218 0 0 2.9833 0 0 652.2512280524037 0 652.2512280524037 0 37.21848749616356 0 0 0 1.5 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.9833 + + 8 NaN NaN 103888.7 NaN 20472 4735 25204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25211 99.414 NaN 208820 35 0 9257.5 0.327 + -1 KRRQLCVRKLM 11 62 510.6342607216871 1528.8809527652613 3 510.6343078613281 MULTI HCD FTMS 0 0 0 25210 96121.21875 0.657232431935787 2 -0.01898956298828125 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.40826533853263924 0.41713015341995335 2 K 1 -1 7.7423 0 0 0.5064 0 0 982.5581289865581 415.1981600397094 1397.7562890262675 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.5064 + + 10 + NaN NaN 121720.3 NaN 20473 4736 25210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25212 99.419 NaN 63917 35 0 20055 0.261 + 32350 VYVGYFVI 8 28 480.2653705275476 958.5161881218952 2 480.2645568847656 MULTI HCD FTMS 0 0 0 25210 6230.3154296875 0.1813651995850899 7 -0.08670806884765625 2 Unmodified _VYVGYFVI_ REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|302|3|anti-sense;REV__L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|20|1|anti-sense 2.8892196856762586 0.5377058178582064 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 122685 NaN 20474 4736 25210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25214 99.424 NaN 305540 35 0 62582 0.327 + 31750 VYLLTFPPL 9 39 531.8152570383778 1061.6159611435555 2 531.8156127929688 MULTI HCD FTMS 0 0 0 25213 309175.53125 0.29959377339247517 30 -0.4246063232421875 1 Unmodified _VYLLTFPPL_ SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense 77.98433622928108 0.006504613272346738 2 [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P] 9 0 + 71.661 0 0 6.7501 6.7501 92.269 0 0 0 5.6424927368725974 64.67084689121528 5.6424927368725974 16.505149978319906 0 2.774227503252014 0 0.805462187404089 0 + + [YV]{I|L}{I|L}T{M(Oxidation (M))|F}P[{I|L}P];[YV]{I|L}{I|L}TP{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}PT{I|L}{M(Oxidation (M))|F}[{I|L}P];[YV]{I|L}{I|L}TP{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}PT{I|L}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]};[YV]{I|L}PV[YV][{I|L}P] 6.7501;5.1954;5.1954;4.0408;3.6822;3.4718 +;-;-;-;-;- + 168 NaN NaN 140416.2 NaN 20475 4737 25213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25215 99.428 NaN 530360 35 0 57106 0.261 -1 0 57 595.300237975155 594.292961508555 1 595.30029296875 MULTI HCD FTMS 0 0 0 25213 292247.625 0.07344101796486187 44 -0.675811767578125 2 NaN NaN 2 [Y{I|L}]E 3 -1 19.41 0 0 3.2661 0 0 0 186.0804008597041 186.0804008597041 8.952424927286843 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]E 3.2661 - 22 NaN NaN 180925.5 NaN 20476 4737 25213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25217 99.433 NaN 304310 35 0 41476 0.327 + 10056 IFDVASIIL 9 49 495.7971527324902 989.5797525317804 2 495.79730224609375 MULTI HCD FTMS 0 0 0 25216 74594.296875 0.2473505602184876 1 -0.00939178466796875 1 Unmodified _IFDVASIIL_ ENSG00000196367|ENST00000456197|TRRAP;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP 68.08070601005525 0.009709267492204555 2 VAS{I|L}{I|L}{I|L} 6 3 71.419 0 0 7.2172 0 0 375.17796523261876 0 375.17796523261876 0 43.21501508154121 0 0 0 2.274227503252014 0 1.2302046884880937 0 + VAS{I|L}{I|L}{I|L} 7.2172 + + 115 NaN NaN 146682.9 NaN 20477 4738 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25218 99.437 NaN 364120 35 0 58288 0.261 + 3423 EFHFWIYHF 9 55 442.5410044100766 1324.6011838304298 3 442.54132080078125 MULTI HCD FTMS 0 0 0 25216 57162.5703125 0.2975575406798658 1 -0.00939178466796875 2 Unmodified _EFHFWIYHF_ ENST00000421210.1_2_10:64135465-64135950:+|nuORF 5.296884461304476 0.3108627248283497 2 DG{M(Oxidation (M))|F} 3 8 29.693 0 0 2.2416 0 0 987.4710701603111 0 987.4710701603111 0 10.427965835756435 0 0 0 0.5 0 0 0 DG{M(Oxidation (M))|F} 2.2416 - 24 + NaN NaN 158943.9 NaN 20478 4738 25216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25220 99.442 NaN 235810 35 0 55955 0.327 -1 LPEPRRKGC 9 53 556.8036605968324 1111.5927682604647 2 556.8046875 MULTI HCD FTMS 0 0 0 25219 74446.71875 0.3402603883687063 2 -0.0289764404296875 1 Carbamidomethyl (C) _LPEPRRKGC(Carbamidomethyl (C))_ ENST00000524465.5_3_2:17935566-17941221:+|nuORF;ENST00000532257.1_3_2:17935566-17941189:+|nuORF 13.90604991867851 0.24021115267848145 2 {I|L}PEY{I|L} 5 -1 47.519 0 0 4.2748 0 0 0 493.2419202906461 493.2419202906461 19.242340564755267 0 0 0 0 1.305462187404089 0 0.3494850021680094 0 {I|L}PEY{I|L} 4.2748 - 190 + NaN NaN 124777.3 NaN 20479 4739 25219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25221 99.447 NaN 98688 35 0 18313 0.262 + 5010 FCPHPHPA 8 35 453.2096088011573 NaN 0 453.20947265625 PEAK HCD FTMS 0 0 0 25219 31167.048828125 0.655058553487204 31 -0.43354034423828125 2 Unmodified _FCPHPHPA_ REV__ENST00000602410.1_1_2:233387240-233387915:+|nuORF 0.7936320650641473 0.38822285293237185 2 P 1 -1 0.27759 0 0 0.030693 0 0 451.46095236618334 352.86310754947505 804.3240599156584 0 0 0 0 0 0 0 0 0 P 0.030693 + + 1 + NaN NaN 99787.6 NaN 20480 4739 25219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25222 99.45 NaN 33981 35 0 6100.4 0.261 + 6995 FPWEQSLAGM 10 27 583.2720972076961 NaN 0 583.272705078125 PEAK HCD FTMS 0 0 0 25219 37009.6796875 1 0 0 3 Unmodified _FPWEQSLAGM_ REV__ENST00000514949.1_1_5:122111316-122111454:+|nuORF 1.1933415558491238 0.33916295405077446 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95796.1 NaN 20481 4739 25219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25223 99.454 NaN 78078 35 0 11852 0.261 + 13622 KYPENFFLL 9 33 585.8132775532669 1169.6120021733336 2 585.814208984375 MULTI HCD FTMS 0 0 0 25219 34035.1953125 0.4435628630639066 10 -0.16522979736328125 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.445 0 0 2.603 0 0 778.3628407209 0 778.3628407209 0 24.960762528683702 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.603 + + 13 NaN NaN 109869.5 NaN 20482 4739 25219 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25225 99.459 NaN 479910 35 0 74451 0.326 -1 0 72 636.3189547562791 1270.6233565793582 2 636.3192138671875 MULTI HCD FTMS 0 0 0 25224 88628.9296875 0.13965351460698192 21 -0.3090057373046875 1 NaN NaN 2 [C(Carbamidomethyl (C))M]{I|L}[{I|L}T]{[WT]|[RM]}{I|L}S{M(Oxidation (M))|F} 10 -1 + 43.205 0 0 3.4003 3.4003 81.253 0 0 0 1.9325644096189265 16.532125137753436 1.9325644096189265 1.9325644096189265 0 0.8807196863200843 0 0.7742275032520141 0 [C(Carbamidomethyl (C))M]{I|L}[{I|L}T]{[WT]|[RM]}{I|L}S{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YG[{I|L}P][QP]{I|L}S{M(Oxidation (M))|F} 3.4003;3.2482 -;- 213 NaN NaN 161050.3 NaN 20483 4740 25224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25226 99.463 NaN 147150 35 0 13723 0.261 + 13823 KYPSPFFVF 9 47 566.2977216563337 1130.5808903794673 2 566.2975463867188 MULTI HCD FTMS 0 0 0 25224 30746.794921875 0.5243459930480941 -6 0.0714263916015625 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 2 NPV{M(Oxidation (M))|F} 4 6 36.402 0 0 3.2198 0 0 655.3376175296611 0 655.3376175296611 0 21.453650195120844 0 0 0 1.3494850021680094 0 0 0 NPV{M(Oxidation (M))|F} 3.2198 - 85 + NaN NaN 104044.2 NaN 20484 4740 25224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25227 99.467 NaN 60222 35 0 4132.1 0.261 + -1 YNIKHFFMK 9 43 622.3164235559636 1242.6182941787272 2 622.3170166015625 MULTI HCD FTMS 0 0 0 25224 6348.9560546875 0.38040555334575427 2 -0.02591705322265625 3 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 2 [YN]{I|L}[R{M(Oxidation (M))|F}]S{I|L} 7 -1 39.71 0 0 3.1956 0 0 0 346.14069544010005 346.14069544010005 31.75083189322727 0 0 0 0 1 1.5228787452803376 0 0 [YN]{I|L}[R{M(Oxidation (M))|F}]S{I|L} 3.1956 - 27 + NaN NaN 91040.2 NaN 20485 4740 25224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25229 99.472 NaN 3571700 35 0 224610 0.327 + 27485 SYYGPLNLLTF 11 113 644.3346538327479 1286.6547547322957 2 644.3349609375 MULTI HCD FTMS 0 0 0 25228 3052347.75 0.4195242872696513 4 -0.0616455078125 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 270.0645364180072 3.370931493933368E-54 2 {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 11 0 + 124 0 0 9.6373 9.6373 92.475 0 0 0 7.754537344402905 12.217361336923418 7.754537344402905 7.754537344402905 0 3.6237125054200234 0 2.2918089237648673 1.5114393726401687 + + {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};YYSGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GYP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}T{I|L}{M(Oxidation (M))|F};[YG]SYP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};YYSGP{I|L}N{I|L}T{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GYP{I|L}N{I|L}T{I|L}{M(Oxidation (M))|F};YYSGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}GYP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F} 9.6373;9.0346;8.6935;8.2111;8.051;7.7531;7.6084;7.2673;7.1504;6.8093 +;-;-;-;-;-;-;-;-;- + 9638 NaN NaN 642367.8 NaN 20486 4741 25228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25230 99.476 NaN 1937200 35 0 792620 0.264 + 26531 SVLILASY 8 48 433.25468628645314 864.4948196397063 2 433.2547912597656 MULTI HCD FTMS 0 0 0 25228 689692.6875 0.007132091915304967 -17 0.25653839111328125 2 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 T 1 8 16.594 0 0 1.9195 0 0 596.3859256946988 164.03855310611564 760.4244788008144 0 0 0 0 0 0.805462187404089 0 0.3054621874040891 0 T 1.9195 - 16 + NaN NaN 379348.1 NaN 20487 4741 25228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25231 99.48 NaN 123890 35 0 13860 0.261 + 30450 VLPVIYELI 9 54 529.8283348676708 1057.6421168021416 2 529.3228759765625 MULTI HCD FTMS 0 0 0 25228 12852.1708984375 0.628475757695288 1 -0.0130157470703125 3 Unmodified _VLPVIYELI_ ENSG00000184445|ENST00000333479|KNTC1 21.74664581756881 0.17247014374749275 2 Y 1 8 9.6041 0 0 0.90807 0 0 521.3577672921791 370.19785486392817 891.5556221561073 0 0 0 0 0 0.5 0 0 0 + Y 0.90807 + + 15 + NaN NaN 104259.9 NaN 20488 4741 25228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25233 99.485 NaN 824310 35 0 173910 0.327 + 28323 TMFGEFILL 9 45 535.7830954191597 1069.5516379051194 2 535.783447265625 MULTI HCD FTMS 0 0 0 25232 461108.71875 0.2981213690177843 5 -0.07834625244140625 1 Unmodified _TMFGEFILL_ ENSG00000179626|ENST00000641569|OR6C4 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 44.24 0 0 4.1363 0 0 565.2208729474625 0 565.2208729474625 0 44.24024714504206 0 0 0 1.3807196863200843 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.1363 + + 12 NaN NaN 215787.4 NaN 20489 4742 25232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25234 99.489 NaN 476520 35 0 103730 0.261 + 30042 VFQNFPLLF 9 72 562.8105897247117 1123.6066265162233 2 562.810791015625 MULTI HCD FTMS 0 0 0 25232 165085.015625 0.478518907886532 -2 0.02591705322265625 2 Unmodified _VFQNFPLLF_ ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1 36.04419817259434 0.08350412372117409 2 {I|L}{M(Oxidation (M))|F} 2 7 27.959 0 0 2.4883 0 0 845.4411861665758 0 845.4411861665758 0 19.3753063169585 0 0 0 0.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.4883 + + 60 NaN NaN 153198.9 NaN 20490 4742 25232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25235 99.493 NaN 178940 35 0 22887 0.261 + 7725 FYLMQIVEI 9 47 578.3094351702135 1154.604317407227 2 578.3095703125 MULTI HCD FTMS 0 0 0 25232 119292.171875 0.3853990933400209 -2 0.02591705322265625 3 Unmodified _FYLMQIVEI_ ENSG00000137975|ENST00000370565|CLCA2 32.78568957990786 0.09846250359632436 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}VE{I|L} 9 3 + 65.913 0 0 5.7087 5.7087 85.889 0 0 0 60.42850632646001 13.037815606776917 13.037815606776917 5.969100130080562 0 1.6861818737241734 0 1 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q{I|L}VE{I|L};{I|L}{M(Oxidation (M))|F}V{I|L}Q{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[AG]{I|L}VE{I|L};{I|L}{M(Oxidation (M))|F}V{I|L}[AG]{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{I|L};{I|L}{M(Oxidation (M))|F}V{I|L}[YC(Carbamidomethyl (C))]VE{I|L};{I|L}{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}Y{I|L}VE{I|L} 5.7087;5.1917;4.9112;4.3942;4.3058;3.755 -;-;-;-;-;- 124 + NaN NaN 119343.4 NaN 20491 4742 25232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25236 99.496 NaN 410420 35 0 178280 0.263 + 17827 MHGDVFNV 8 56 459.7106678545693 917.4067827759386 2 459.7106628417969 MULTI HCD FTMS 0 0 0 25232 108294.2421875 0.01699429910403269 -16 0.21729278564453125 4 Unmodified _MHGDVFNV_ REV__tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 4.75600775471527 0.5349361699807423 2 W 1 -1 3.4949 0 0 0.38095 0 0 361.1155973284761 367.1953524225219 728.310949750998 0 0 0 0 0 0 0 0 0 W 0.38095 - 1 + NaN NaN 172153.8 NaN 20492 4742 25232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25238 99.501 NaN 767560 35 0 66274 0.327 + 35540 YYGPLNLLTF 10 60 600.818946657316 1199.623340381432 2 600.8189697265625 MULTI HCD FTMS 0 0 0 25237 742852.5 0.12958445891845444 -10 0.12656402587890625 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 142.0795815696625 3.9736287154477415E-07 2 YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 80.48 0 0 6.7088 6.7088 88.919 0 0 0 45.7306842758112 13.294446370893027 13.294446370893027 9.164539485499247 0 2.6989700043360187 1.6989700043360187 2.0356668758921828 0 + + YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P]GG{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F}Q[PS]{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F}Q[PS]{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{M(Oxidation (M))|F}GA[PS]{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}T]{I|L}{M(Oxidation (M))|F}GA[PS]{I|L}T{M(Oxidation (M))|F};[WP]{I|L}{[ET]|[MV]}{[HG]|PP}{I|L}T{M(Oxidation (M))|F} 6.7088;5.9448;4.1182;3.7205;3.3532;2.9555;1.7754 +;-;-;-;-;-;- + 533 + NaN NaN 227362.4 NaN 20493 4743 25237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25239 99.505 NaN 374940 35 0 80065 0.264 + 31192 VVILGPVAD 9 48 441.7681498872293 881.5217468412586 2 441.76824951171875 MULTI HCD FTMS 0 0 0 25237 78844.34375 0.015403386438616374 -15 0.19441986083984375 2 Unmodified _VVILGPVAD_ ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-3|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-5|TJP3 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 9 13.495 0 0 1.5309 0 0 716.4435435715305 0 716.4435435715305 0 6.928031367991563 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5309 - 10 + NaN NaN 143072.5 NaN 20494 4743 25237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25240 99.509 NaN 143580 35 0 31586 0.261 + 5513 FLDAWLMLV 9 35 554.2984583526966 1106.582363772193 2 554.2989501953125 MULTI HCD FTMS 0 0 0 25237 65075.6875 0.7236168367012747 6 -0.106903076171875 3 Unmodified _FLDAWLMLV_ ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1 23.1484247019978 0.1603590852062899 2 {I|L}[{I|L}T]E 4 7 26.427 0 0 2.3881 0 0 632.2992420880875 0 632.2992420880875 0 6.962724883926654 0 0 0 1 0 0.5 0 {I|L}[{I|L}T]E 2.3881 - 6 NaN NaN 120845.7 NaN 20495 4743 25237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25241 99.512 NaN 64056 35 0 5738.4 0.261 + 14595 LFNNRLVH 8 34 506.78941051259415 NaN 0 506.77960205078125 PEAK HCD FTMS 0 0 0 25237 7358.22802734375 0.6366395787925417 -1 0.01633453369140625 4 Unmodified _LFNNRLVH_ ENSG00000176020|ENST00000320431|AMIGO3 5.230669730166228 0.38822285293237185 2 {I|L} 1 7 5.4846 0 0 0.54219 0 0 335.20270910936955 560.2548311822874 895.4575402916569 0 0 0 0 0 0 0 0 0 + {I|L} 0.54219 + + 6 + NaN NaN 116782.2 NaN 20496 4743 25237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25242 99.515 NaN 473530 35 0 229190 0.261 -1 MEALLSTP 8 42 452.2281780403194 902.4418031474388 2 452.2275390625 MULTI HCD FTMS 0 0 0 25237 98027.9296875 0.017350736300142396 -15 0.19441986083984375 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MEALLSTP_ ENSG00000176160|ENST00000323777|HSF5;HSF5|p.H211Pfs*19|1|0.3|ENSG00000176160|chr17:58480186-58480187|-/G|frameshift_variant;nc|ENSG00000176160|Q4G112-2|HSF5 2.577480529830294 0.5381683276125971 2 M 1 -1 7.6587 0 0 0.84867 0 0 342.07780275857004 426.2989757674621 768.3767785260321 0 0 0 0 0 0.3054621874040891 0 0 0 M 0.84867 + + 5 + NaN NaN 163209.1 NaN 20497 4743 25237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25243 99.519 NaN 325770 35 0 47732 0.261 + 34990 YSTTPGRQ 8 61 455.2253015937586 NaN 0 455.2364196777344 PEAK HCD FTMS 0 0 0 25237 35366.484375 0.5614162804036771 -4 0.05832672119140625 6 Unmodified _YSTTPGRQ_ CON__P78386;ENSG00000135443|ENST00000257901|KRT85 2.577480529830294 0.38822285293237185 2 T 1 7 6.9897 0 0 0.76942 0 0 189.02038145292664 615.3443755646338 804.3647570175604 0 0 0 0 0 0 0 0 0 + T 0.76942 + + 6 + NaN NaN 142709.1 NaN 20498 4743 25237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25245 99.524 NaN 762010 35 0 157430 0.327 + 30772 VPPPMPLP 8 38 424.2409362792969 NaN 0 424.2491455078125 PEAK HCD FTMS 0 0 0 25244 16625.111328125 1 0 0 1 Unmodified _VPPPMPLP_ ENST00000461735.1_2_7:150773431-150773557:+|nuORF 2.8892196856762586 0.38822285293237185 2 T 1 8 13.539 0 0 1.5995 0 0 578.3585987775407 164.0385683649047 742.3971671424454 0 0 0 0 0 0.4247425010840047 0 0.3807196863200844 0 T 1.5995 - 4 + NaN NaN 231907.4 NaN 20499 4744 25244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25246 99.528 NaN 174630 35 0 16276 0.261 -1 RIFKPWKCRKK 11 65 516.3098717378437 1545.9077858137307 3 516.3094482421875 MULTI HCD FTMS 0 0 0 25244 16521.501953125 0.1929649291005768 17 -0.24388885498046875 2 Carbamidomethyl (C) _RIFKPWKC(Carbamidomethyl (C))RKK_ PHACTR3|p.W80C|1|0.14|ENSG00000087495|chr20:59743228-59743228|G/C|missense_variant 0 0.41892066650488113 2 {M(Oxidation (M))|F} 1 -1 15.485 0 0 1.0016 0 0 1380.8288348633384 0 1380.8288348633384 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0016 + + 28 + NaN NaN 134463.2 NaN 20500 4744 25244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25248 99.533 NaN 237360 35 0 46880 0.327 + 15729 LPEYLPFVL 9 38 545.8127449099949 1089.6109368867897 2 545.8128662109375 MULTI HCD FTMS 0 0 0 25247 57318.76953125 0.03726668456653468 8 -0.12839508056640625 1 Unmodified _LPEYLPFVL_ ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 25.969 0 0 2.3833 0 0 859.4467920146608 0 859.4467920146608 0 20.48455006504028 0 0 0 0.5 0 0 0 + V{I|L} 2.3833 + + 5 NaN NaN 134162.9 NaN 20501 4745 25247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25249 99.537 NaN 313890 35 0 30145 0.261 + 16483 LSYIINLII 9 61 531.3340439549612 1060.6535349767223 2 531.3342895507812 MULTI HCD FTMS 0 0 0 25247 40083.5625 0.047829285032594454 -8 0.10944366455078125 2 Unmodified _LSYIINLII_ REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1 58.678817012210395 0.019429721296335044 2 {M(Oxidation (M))|F}{I|L}TN{I|L}{I|L}{I|L} 7 -1 63.04 0 0 5.9435 0 0 228.1471882550797 0 228.1471882550797 0 41.35737619865715 0 0 0 0.9247425010840047 0 1.5356668758921828 0 {M(Oxidation (M))|F}{I|L}TN{I|L}{I|L}{I|L} 5.9435 - 786 NaN NaN 147423.3 NaN 20502 4745 25247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25250 99.541 NaN 128770 35 0 8499 0.261 + -1 KRRQLCVRKLM 11 49 510.6342607216871 1528.8809527652613 3 510.6343078613281 MULTI HCD FTMS 0 0 0 25247 101031.015625 0.6908033518890567 11 -0.1672210693359375 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 {I|L} 1 -1 2.2185 0 0 0.14511 0 0 1177.654281477955 235.11860071353752 1412.7728821914925 0 0 0 0 0 0 0 0 0 {I|L} 0.14511 + + 4 + NaN NaN 114450.7 NaN 20503 4745 25247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25251 99.544 NaN 136490 35 0 17916 0.261 -1 DYMNLLGMIF 10 36 624.7852094817596 1247.555866030319 2 625.2864379882812 MULTI HCD FTMS 0 0 0 25247 27740.876953125 0.32751201871859736 1 -0.02264404296875 4 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.3684828712757339 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 36.466 0 0 2.923 0 0 652.2528052428858 0 652.2528052428858 0 32.028937514676485 0 0 0 1.4247425010840047 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.923 + + 37 NaN NaN 113891.5 NaN 20504 4745 25247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25252 99.547 NaN 155620 35 0 32747 0.261 + -1 KICGCSCAQQV 11 43 627.2746751535317 1252.5347973738633 2 627.2741088867188 MULTI HCD FTMS 0 0 0 25247 44405.1875 0.16127679801260464 -8 0.10944366455078125 5 2 Carbamidomethyl (C) _KIC(Carbamidomethyl (C))GCSC(Carbamidomethyl (C))AQQV_ REV__ENST00000582352.1_1_17:18236273-18236588:-|nuORF 2.9952420565917617 0.40578455234410343 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117629.2 NaN 20505 4745 25247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25253 99.551 NaN 121550 35 0 8152.8 0.262 + 11798 KEIFSNFF 8 57 516.2634380940242 1030.5123232548483 2 516.263427734375 MULTI HCD FTMS 0 0 0 25247 6801.83447265625 0.0788027183678479 8 -0.12839508056640625 6 Unmodified _KEIFSNFF_ REV__tr|U7T0H2|U7T0H2_FUSNUAsparagine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=asnSPE=3SV=1 10.073929032068715 0.5196730168178844 2 N 1 -1 0.71334 0 0 0.069222 0 0 458.19971446754204 455.2496737115844 913.4493881791265 0 0 0 0 0 0 0 0 0 N 0.069222 + + 6 + NaN NaN 118578.4 NaN 20506 4745 25247 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25256 99.562 NaN 460070 35 0 43137 0.327 -1 0 60 595.300237975155 594.292961508555 1 595.3007202148438 MULTI HCD FTMS 0 0 0 25255 202533.421875 0.05089608743409573 54 -0.9046554565429688 1 NaN NaN 2 [Y{I|L}]E 3 -1 18.53 0 0 3.1179 0 0 0 186.08042991374944 186.08042991374944 3.915280875683756 0 0 0 0 0 1.5228787452803376 0 0 [Y{I|L}]E 3.1179 - 23 NaN NaN 172986.5 NaN 20507 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25257 99.567 NaN 270260 35 0 25183 0.262 + 29628 VAPIIFLTI 9 47 493.8179627478947 985.6213725625894 2 493.81829833984375 MULTI HCD FTMS 0 0 0 25255 296500.34375 0.21876164360264963 -6 0.09136199951171875 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 46.92087301778293 0.0358782797343276 2 {I|L}T{I|L} 3 -1 38.333 0 0 3.8892 0 0 640.393356764358 0 640.393356764358 0 19.616560180866415 0 0 0 0.7887254899964358 0 0.4247425010840047 0 {I|L}T{I|L} 3.8892 + + 59 NaN NaN 133390.9 NaN 20508 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25258 99.57 NaN 266810 35 0 56433 0.261 + 33230 YFEELITML 9 44 579.7913218642218 1157.5680907952435 2 579.7916259765625 MULTI HCD FTMS 0 0 0 25255 140395.15625 0.7150529261353078 3 -0.05422210693359375 3 Unmodified _YFEELITML_ CLTC-VMP1|12|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|9|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC 10.073929032068715 0.27331982688540024 2 {I|L}[MT]{I|L} 4 5 21.995 0 0 1.9001 0 0 681.296678611525 0 681.296678611525 0 4.0359843160042175 0 0 0 0.8807196863200843 0 0 0 + {I|L}[MT]{I|L} 1.9001 + + 19 NaN NaN 134040.2 NaN 20509 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25259 99.573 NaN 78781 35 0 6865.3 0.261 + 17442 LYSELFTLL 9 40 549.8078411478853 1097.6011293625704 2 549.8084716796875 MULTI HCD FTMS 0 0 0 25255 49494.29296875 0.1657483916156806 -10 0.13916015625 4 Unmodified _LYSELFTLL_ ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F} 1 8 14.49 0 0 1.3201 0 0 345.2292766062763 602.2808321588499 947.5101087651262 0 0 0 0 0 0.75 0 0 0 + {M(Oxidation (M))|F} 1.3201 + + 8 + NaN NaN 100584.1 NaN 20510 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25260 99.577 NaN 383470 35 0 61021 0.263 + 30961 VRPPHPGA 8 39 415.73628433731926 NaN 0 415.7460021972656 PEAK HCD FTMS 0 0 0 25255 9420.783203125 0.7512796909801722 1 -0.03221893310546875 5 Unmodified _VRPPHPGA_ ENST00000607166.1_1_10:31607359-31607734:-|nuORF 0.7936320650641473 0.38822285293237185 2 T 1 8 9.2917 0 0 1.1202 0 0 561.3490202353823 164.03852258853752 725.3875428239198 0 0 0 0 0 0 0 0.3807196863200844 0 T 1.1202 - 2 + NaN NaN 155909.1 NaN 20511 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25261 99.58 NaN 79685 35 0 7380.2 0.261 + 33701 YKYRLKDW 8 42 586.3173217773438 NaN 0 586.3173217773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YKYRLKDW_ tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1 2.302733041254933 0.38822285293237185 2 {I|L}N 2 7 14.222 0 0 1.2159 0 0 131.10142946196044 808.3687838190061 939.4702132809666 0 0 0 0 0 0.3252574989159953 0 0 0 {I|L}N 1.2159 - 9 + NaN NaN 102458.9 NaN 20512 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25262 99.583 NaN 203330 35 0 39147 0.261 + -1 CVLNYNTKNN 10 46 620.2935180664062 NaN 0 620.2935180664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _C(Carbamidomethyl (C))VLNYNTKNN_ REV__ENSG00000096433|ENST00000605930|ITPR3;REV__ENSG00000123104|ENST00000381340|ITPR2;REV__ENSG00000150995|ENST00000649015|ITPR1;REV__ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;REV__nc|ENSG00000150995|Q14643-2|ITPR1;REV__nc|ENSG00000150995|Q14643-3|ITPR1;REV__nc|ENSG00000150995|Q14643-4|ITPR1;REV__nc|ENSG00000150995|Q14643-5|ITPR1;REV__nc|ENSG00000150995|Q14643-6|ITPR1;REV__nc|ENSG00000150995|Q14643-7|ITPR1;REV__nc|ENSG00000150995|Q14643-8|ITPR1 1.4819007175156935 0.33891598740166873 2 D 1 -1 3.4949 0 0 0.2824 0 0 636.3130891673571 483.19831262760005 1119.5114017949572 0 0 0 0 0 0 0 0 0 D 0.2824 - 6 + NaN NaN 122666.9 NaN 20513 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25263 99.587 NaN 91634 35 0 14927 0.261 + 33806 YLIFMKRL 8 36 542.3248515325921 1082.6351501319841 2 542.82666015625 MULTI HCD FTMS 0 0 0 25255 31829.607421875 0.8630461547195559 -1 0.00707244873046875 8 Unmodified _YLIFMKRL_ tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1 9.347437153973935 0.5250182646323369 2 YYK 3 6 3.9524 0 0 0.36507 0 0 0 625.3857659369247 625.3857659369247 3.9524249272868435 0 0 0 0 0 0 0 0 YYK 0.36507 - 7 NaN NaN 96551.3 NaN 20514 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25264 99.59 NaN 99816 35 0 7814.6 0.261 -1 MKGKFLKV 8 43 496.7996520996094 NaN 0 496.7996520996094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MKGKFLKV_ CON__P0C1U8 2.302733041254933 0.38822285293237185 2 {I|L}{I|L} 2 -1 10.969 0 0 1.1129 0 0 126.13603582574918 630.2964571588499 756.4324929845991 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.1129 - 4 + NaN NaN 98575 NaN 20515 4747 25255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25266 99.595 NaN 5543500 35 0 901870 0.327 -1 0 64 444.2459044466084 886.4772559600168 2 444.24627685546875 MULTI HCD FTMS 0 0 0 25265 2776865.75 0.18446412474283713 -10 0.16194915771484375 1 NaN NaN 2 T 1 -1 13.896 0 0 1.5675 0 0 189.04323446370887 593.3629508008469 782.4061852645557 0 0 0 0 0 0.7302046884880937 0 0.5 0 T 1.5675 - 21 + NaN NaN 934345.1 NaN 20516 4748 25265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25267 99.599 NaN 233730 35 0 26171 0.261 + 21374 PTSFLSLLI 9 62 495.7971527324902 989.5797525317804 2 495.7973327636719 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PTSFLSLLI_ REV__ENSG00000094841|ENST00000373383|UPRT;REV__ENST00000462237.5_1_X:74514443-74523343:+|nuORF;REV__nc|ENSG00000094841|Q96BW1-3|UPRT 34.10243960390752 0.09241788333544565 2 S{I|L}{I|L}{I|L} 4 -1 54.24 0 0 5.4811 0 0 545.2853871076187 0 545.2853871076187 0 47.16190326687972 0 0 0 1.4247425010840047 0 0.805462187404089 0 S{I|L}{I|L}{I|L} 5.4811 + + 76 NaN NaN 129688.5 NaN 20517 4748 25265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25268 99.603 NaN 225140 35 0 27083 0.261 + 17559 LYVLQVLTF 9 50 548.3263209168332 1094.6380889004663 2 548.3268432617188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 69.10491478415734 0.009377850133389008 2 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 86.353 0 0 7.8888 7.8888 91.871 0 0 0 16.980523937757752 86.3532845391395 16.980523937757752 9.208187539523749 0 2.7302046884880937 1.2218487496163564 0 0 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}][{I|L}A][VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q[{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}[AG][{I|L}A][Y{I|L}] 7.8888;7.0475;4.745;3.3156;2.4744 +;-;-;-;- + 124 NaN NaN 124312 NaN 20518 4748 25265 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25270 99.608 NaN 33683000 35 0 14450000 0.327 + 26532 SVLILASY 8 48 433.25468628645314 864.4948196397063 2 433.25531005859375 MULTI HCD FTMS 0 0 0 25269 24816788 0.2566296790824498 -9 0.1491546630859375 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 T 1 8 17.034 0 0 1.9704 0 0 596.3857405056464 164.03864465885002 760.4243851644964 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 14 + NaN NaN 1082149.1 NaN 20519 4749 25269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25271 99.612 NaN 1703000 35 0 83663 0.261 + 27486 SYYGPLNLLTF 11 106 644.3346538327479 1286.6547547322957 2 644.3350830078125 MULTI HCD FTMS 0 0 0 25269 1716704.875 0.23594932429855373 12 -0.15985107421875 2 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 246.87035742203602 1.5914159332685868E-40 2 {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 11 0 + 100.72 0 0 7.8277 7.8277 94.771 0 0 0 5.031137545499945 72.98089002261098 5.031137545499945 21.39075625191822 0 3.254432191740108 0 1.892642683904553 1.5044321917401078 + + {[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}EVAA{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}E[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YN]VAA{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][YN][Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}EQN{I|L}{I|L}T{M(Oxidation (M))|F};[HM]{[{M(Oxidation (M))|F}H]|[RQ]}QN{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[YN]AA{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}D{[QV]|[N{I|L}]|[RA]|[KV]}G{M(Oxidation (M))|F}T{M(Oxidation (M))|F} 7.8277;6.1652;5.949;5.6541;5.5069;4.9958;4.7462;4.6708;4.6469;4.5265 +;-;-;-;-;-;-;-;-;- + 5137 NaN NaN 361789.4 NaN 20520 4749 25269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25273 99.617 NaN 4507900 35 0 2434100 0.326 + 17828 MHGDVFNV 8 52 459.7106678545693 917.4067827759386 2 459.7105407714844 MULTI HCD FTMS 0 0 0 25272 2783370 0.43678612400550404 -8 0.132568359375 1 Unmodified _MHGDVFNV_ REV__tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 4.75600775471527 0.5349361699807423 2 T 1 -1 7.7423 0 0 0.84393 0 0 649.2978483050387 164.03852258853752 813.3363708935761 0 0 0 0 0 0.4247425010840047 0 0 0 T 0.84393 - 7 + NaN NaN 769708.7 NaN 20521 4750 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25274 99.621 NaN 459690 35 0 91973 0.261 + 628 APGYHMAK 8 61 437.71522191402795 873.4158908948559 2 437.7156677246094 MULTI HCD FTMS 0 0 0 25272 210450.09375 0.4678582745205 -6 0.0933685302734375 2 Unmodified _APGYHMAK_ ENSG00000068976|ENST00000164139|PYGM;ENSG00000100504|ENST00000216392|PYGL;ENSG00000100994|ENST00000216962|PYGB;ENST00000462303.1_1_11:64518773-64519462:-|nuORF;nc|ENSG00000068976|P11217-2|PYGM;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 7 13.495 0 0 1.5451 0 0 708.336985720831 0 708.336985720831 0 10.73064017839119 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.5451 + + 50 + NaN NaN 162364.8 NaN 20522 4750 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25275 99.625 NaN 138600 35 0 9468.4 0.261 + 32409 VYYPELFVW 9 53 608.3073869111283 NaN 0 608.3101196289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VYYPELFVW_ ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion 28.486842064014134 0.13043271994793734 2 V{M(Oxidation (M))|F} 2 7 15.503 0 0 1.2764 0 0 204.08870979495356 761.350111241937 965.4388210368907 0 0 0 0 0 1.055462187404089 0 0 0 V{M(Oxidation (M))|F} 1.2764 - 67 + NaN NaN 126297.8 NaN 20523 4750 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25276 99.628 NaN 167030 35 0 23149 0.262 + 34841 YRNISLLL 8 56 496.30010986328125 NaN 0 496.30010986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YRNISLLL_ REV__ENSG00000119523|ENST00000476832|ALG2;REV__nc|ENSG00000119523|Q9H553-2|ALG2 5.760428011301431 0.38822285293237185 2 {I|L}{I|L}S 3 -1 16.198 0 0 1.6401 0 0 129.14218042402416 542.2609346979124 671.4031151219365 0 0 0 0 0 0 0 0 0 {I|L}{I|L}S 1.6401 - 19 + NaN NaN 125753.5 NaN 20524 4750 25272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25278 99.633 NaN 3531200 35 0 289630 0.327 + 35541 YYGPLNLLTF 10 81 600.818946657316 1199.623340381432 2 600.819091796875 MULTI HCD FTMS 0 0 0 25277 2934643.75 0.5119242682257569 -2 0.025146484375 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 155.02607137521346 8.105858163714844E-08 2 YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 97.018 0 0 8.0874 8.0874 95.257 0 0 0 7.936617166030203 62.26911912748342 7.936617166030203 22.208124315491375 0 2.586696871556164 1.6989700043360187 0.3807196863200844 1.6989700043360187 + + YYG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P]GG{I|L}{I|L}T{M(Oxidation (M))|F};YYG[{I|L}P][{I|L}V]QT{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}GE{I|L}T{M(Oxidation (M))|F};[QA][TP][Y{M(Oxidation (M))|F}]{I|L}{I|L}T{M(Oxidation (M))|F};[WP]{I|L}{[ET]|[MV]}{[HG]|PP}{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HK]NYC{I|L}[VP];[WP]{I|L}[EP][TP]{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}G[WR]{[HG]|PP}{I|L}T{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}[HK]N[MT]{M(Oxidation (M))|F}[VP] 8.0874;6.2362;3.5189;2.8719;2.5631;1.848;1.8428;1.8099;1.5459;1.4653 +;-;-;-;-;-;-;-;-;- + 1204 NaN NaN 448844.7 NaN 20525 4751 25277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25279 99.637 NaN 3452600 35 0 1060700 0.264 + 10322 ILPGVVTSP 9 51 441.7681498872293 881.5217468412586 2 441.7681884765625 MULTI HCD FTMS 0 0 0 25277 2395142.75 0.467925885347994 -7 0.10918426513671875 2 Unmodified _ILPGVVTSP_ ENSG00000177992|ENST00000325643|SPATA31E1 4.75600775471527 0.31496297302216103 2 MT 2 8 10.445 0 0 1.1849 0 0 53.0485233412141 593.3626679170995 646.4111912583137 0 0 0 0 0 0 0 0.4247425010840047 0 MT 1.1849 - 16 + NaN NaN 610741.3 NaN 20526 4751 25277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25280 99.641 NaN 993000 35 0 177370 0.261 + 19300 NLVLALMG 8 54 415.74582709414716 NaN 0 415.74700927734375 PEAK HCD FTMS 0 0 0 25277 97512.328125 0.8300965876170567 -1 0.01581573486328125 3 Unmodified _NLVLALMG_ REV__ENSG00000198838|ENST00000634891|RYR3;REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198838|Q15413-3|RYR3 0.7936320650641473 0.38822285293237185 2 T 1 -1 11.237 0 0 1.3547 0 0 168.0655757188211 557.3410794738027 725.4066551926237 0 0 0 0 0 0.4247425010840047 0 0 0 T 1.3547 - 8 + NaN NaN 248125.8 NaN 20527 4751 25277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25281 99.644 NaN 580600 35 0 69487 0.261 + 16201 LPVPARPIF 9 78 505.3111267089844 NaN 0 505.3111267089844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _LPVPARPIF_ REV__ENSG00000186185|ENST00000593135|KIF18B;REV__KIF18B|p.T766I|1|0.37|ENSG00000186185|chr17:44927058-44927058|G/A|missense_variant;REV__nc|ENSG00000186185|Q86Y91-6|KIF18B 14.581692164780916 0.22376707489839515 2 PVA{I|L}{M(Oxidation (M))|F} 5 -1 34.597 0 0 3.4336 0 0 113.08780855006962 364.1850985162719 477.27290706634153 0 0 0 0 0 1.5044321917401078 0 0 0 PVA{I|L}{M(Oxidation (M))|F} 3.4336 - 47 + NaN NaN 180070.7 NaN 20528 4751 25277 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25283 99.649 NaN 6467800 35 0 3331800 0.327 -1 0 71 452.2281780403194 902.4418031474388 2 452.2281188964844 MULTI HCD FTMS 0 0 0 25282 2325719.75 0.41164747862086787 -6 0.09310150146484375 1 NaN NaN 2 TM 2 -1 14.31 0 0 1.5857 0 0 429.3239270000748 238.0063418024047 667.3302688024795 0 0 0 0 0 0.8252574989159953 0 0.2614393726401688 0 TM 1.5857 - 34 + NaN NaN 1070848.1 NaN 20529 4752 25282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25284 99.653 NaN 5207400 35 0 1034200 0.261 + 31200 VVLLPGSY 8 52 424.2499450842295 846.4853372352591 2 424.24993896484375 MULTI HCD FTMS 0 0 0 25282 2193782.25 0.43114679529244737 -6 0.09310150146484375 2 Unmodified _VVLLPGSY_ REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF 5.760428011301431 0.5334459684533844 2 T 1 -1 18.227 0 0 2.1532 0 0 578.3751782339559 164.04030276675454 742.4154810007104 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 18 NaN NaN 873934.3 NaN 20530 4752 25282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25285 99.657 NaN 3292500 35 0 537500 0.261 -1 0 65 455.2369352764422 908.4593176196844 2 455.23681640625 MULTI HCD FTMS 0 0 0 25282 2317259.75 0.7093728119185764 -8 0.12517547607421875 3 NaN NaN 2 T 1 -1 17.034 0 0 1.875 0 0 189.04344374824376 615.3457061297031 804.3891498779469 0 0 0 0 0 1 0 0.3054621874040891 0 T 1.875 - 17 NaN NaN 590252.5 NaN 20531 4752 25282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25287 99.661 NaN 682210 35 0 98129 0.326 + 11541 IYSINLLLI 9 69 531.3340439549612 1060.6535349767223 2 531.3341674804688 MULTI HCD FTMS 0 0 0 25286 838054.8125 1 0 0 1 Unmodified _IYSINLLLI_ ENSG00000111371|ENST00000398637|SLC38A1 85.64151623876279 0.004640175941193596 2 [Y{I|L}]S{I|L}N{I|L}{I|L}{I|L}{I|L} 9 0 + 76.212 0 0 7.1854 7.1854 88.909 0 0 0 14.406140654642812 16.478174818886373 14.406140654642812 7.028937514676485 0 2.468765315847925 1.0457574905606752 1.5994850021680094 0 + + [Y{I|L}]S{I|L}N{I|L}{I|L}{I|L}{I|L};[Y{I|L}]S{I|L}{I|L}N{I|L}{I|L}{I|L};[Y{I|L}]S{I|L}GG{I|L}{I|L}{I|L}{I|L};{I|L}{I|L}[YV]TN{I|L}{I|L}{I|L};[Y{I|L}]S{I|L}{I|L}GG{I|L}{I|L}{I|L};[Y{I|L}][{I|L}V]TN{I|L}{I|L}{I|L};{I|L}{I|L}[YV]TGG{I|L}{I|L}{I|L};[Y{I|L}][{I|L}V]TGG{I|L}{I|L}{I|L} 7.1854;6.5227;6.3172;5.8271;5.6545;5.4001;4.959;4.532 +;-;-;-;-;-;-;- + 362 NaN NaN 194052.7 NaN 20532 4753 25286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25288 99.666 NaN 95390 35 0 11868 0.263 + -1 FECYCCDC 8 40 405.1190490722656 NaN 0 405.1190490722656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 4 Carbamidomethyl (C) _FEC(Carbamidomethyl (C))YC(Carbamidomethyl (C))C(Carbamidomethyl (C))DC(Carbamidomethyl (C))_ REV__ENSG00000125386|ENST00000637812|FAM193A;REV__ENSG00000146067|ENST00000514747|FAM193B;REV__ENST00000506955.5_1_5:176959168-176966109:-|nuORF;REV__ENST00000510479.5_1_5:176959168-176964941:-|nuORF;REV__nc|ENSG00000125386|P78312-2|FAM193A;REV__nc|ENSG00000125386|P78312-4|FAM193A;REV__nc|ENSG00000125386|P78312-5|FAM193A;REV__nc|ENSG00000125386|P78312-6|FAM193A;REV__nc|ENSG00000125386|P78312|FAM193A;REV__nc|ENSG00000146067|Q96PV7|FAM193B 0.45834013312273997 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103376.9 NaN 20533 4753 25286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25289 99.669 NaN 257270 35 0 54008 0.261 + -1 LMIEFAANLSF 11 57 636.3197898072341 NaN 0 636.3192138671875 PEAK HCD FTMS 0 0 0 25286 37088.12109375 0.32592661171759046 -1 0.0126495361328125 3 Oxidation (M) _LM(Oxidation (M))IEFAANLSF_ REV__DEPDC5|p.K1387M|1|0.33|ENSG00000100150|chr22:31893708-31893708|A/T|missense_variant 13.614867670302875 0.3034986847640154 2 S{I|L} 2 -1 19.024 0 0 1.4972 0 0 165.07736750384635 902.4029316037438 1067.48029910759 0 0 0 0 0 0.805462187404089 0 0 0 S{I|L} 1.4972 - 27 + NaN NaN 130652.2 NaN 20534 4753 25286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25291 99.674 NaN 2489600 35 0 427410 0.327 + 27487 SYYGPLNLLTF 11 109 644.3346538327479 1286.6547547322957 2 645.3184204101562 MULTI HCD FTMS 0 0 0 25290 88029.7734375 0.042281744786890126 17 -0.21446990966796875 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 81.9152076656658 0.0037806248626325208 2 [YN]{M(Oxidation (M))|F}EKN{I|L}{I|L}T 9 6 68.004 0 0 5.2853 0 0 0 161.0742853321582 161.0742853321582 26.099323052553984 0 0 0 0 0 1.0457574905606752 1.1351518780601924 1.9361818737241734 [YN]{M(Oxidation (M))|F}EKN{I|L}{I|L}T 5.2853 - 6085 NaN NaN 469691.1 NaN 20535 4754 25290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25292 99.678 NaN 912340 35 0 404160 0.264 + 28790 TTNKYIGG 8 64 427.2236496930462 852.4327464528924 2 427.2235107421875 MULTI HCD FTMS 0 0 0 25290 368502.25 0.889095042940872 -4 0.05712127685546875 2 Unmodified _TTNKYIGG_ REV__tr|U7T2K2|U7T2K2_FUSNUL-aspartateoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00735PE=3SV=1 2.302733041254933 0.5385759549224092 2 V 1 -1 7.2185 0 0 0.84681 0 0 459.1298943348723 291.21067224674067 750.340566581613 0 0 0 0 0 0.5 0 0 0 V 0.84681 - 38 + NaN NaN 227046.5 NaN 20536 4754 25290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25293 99.682 NaN 1739300 35 0 355580 0.261 + 21408 PVPEGLIRIYS 11 47 415.238215596031 NaN 0 415.2439270019531 PEAK HCD FTMS 0 0 0 25290 198340.46875 1 0 0 3 Unmodified _PVPEGLIRIYS_ ENSG00000065621|ENST00000338595|GSTO2;nc|ENSG00000065621|Q9H4Y5-2|GSTO2 1.3296431237094175 0.3383483288439026 2 T 1 11 19.292 0 0 2.3286 0 0 167.06147963691564 557.3300018329876 724.3914814699033 0 0 0 0 0 1 0 0.3807196863200844 0 T 2.3286 - 4 NaN NaN 351685.5 NaN 20537 4754 25290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25294 99.685 NaN 288520 35 0 58147 0.261 + -1 MEQAERGWCK 10 48 627.2746751535317 1252.5347973738633 2 627.2748413085938 MULTI HCD FTMS 0 0 0 25290 57554.82421875 0.2090354366858221 1 -0.019287109375 4 Oxidation (M) _M(Oxidation (M))EQAERGWCK_ REV__ENST00000320785.9_1_17:4927512-4927611:+|nuORF 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 16 NaN NaN 139997.2 NaN 20538 4754 25290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25295 99.689 NaN 301340 35 0 31598 0.262 + 12260 KLLVKGVLTF 10 75 559.3693157878976 NaN 0 559.317138671875 PEAK HCD FTMS 0 0 0 25290 64653.265625 0.655045276672837 1 -0.019287109375 5 Unmodified _KLLVKGVLTF_ REV__ENSG00000185019|ENST00000217173|UBOX5;REV__nc|ENSG00000185019|O94941-2|UBOX5 3.5964929083625545 0.337106189561315 2 V{I|L}QV 4 -1 15.433 0 0 1.382 0 0 276.2525239458401 398.1690767877563 674.4216007335964 0 0 0 0 0 0 0 0 0 V{I|L}QV 1.382 - 105 + NaN NaN 134688.4 NaN 20539 4754 25290 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25298 99.7 NaN 1514400 35 0 143140 0.327 + 10644 IPVAIFITL 9 68 493.8179627478947 985.6213725625894 2 493.81805419921875 MULTI HCD FTMS 0 0 0 25297 600883.5 0.44333932437038776 3 -0.02417755126953125 1 Unmodified _IPVAIFITL_ ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENST00000488002.5_1_3:179322588-179334847:+|nuORF 93.88341677533236 0.004424206486747196 2 [{I|L}T]{M(Oxidation (M))|F}{I|L}{I|L}AVP{I|L} 9 6 + 71.434 0 0 7.2476 7.2476 88.302 0 0 0 8.423304748203712 16.47817481888638 8.423304748203712 5.350234014460412 0 0.3807196863200844 1.3010299956639813 1.7783773187068794 0 [{I|L}T]{M(Oxidation (M))|F}{I|L}{I|L}AVP{I|L};[{I|L}T]{I|L}{M(Oxidation (M))|F}{I|L}AVP{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}T{I|L}{I|L}AVP{I|L};[{M(Oxidation (M))|F}T]{I|L}{I|L}{I|L}AVP{I|L};[VP]{I|L}{M(Oxidation (M))|F}[{I|L}A]{I|L}T{I|L};{I|L}{I|L}T{M(Oxidation (M))|F}{I|L}AVP{I|L};[VP]{M(Oxidation (M))|F}{I|L}[{I|L}A]{I|L}T{I|L};[{I|L}P]V{M(Oxidation (M))|F}[{I|L}A]{I|L}T{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[VP][{I|L}A]{I|L}T{I|L} 7.2476;6.7048;6.393;5.3292;4.959;4.5274;4.4397;4.1391;3.2608 -;-;-;-;-;-;-;-;- 252 NaN NaN 319338.4 NaN 20540 4756 25297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25299 99.704 NaN 242030 35 0 17965 0.261 + -1 MLQIMLLCF 9 63 572.2819213867188 NaN 0 572.2819213867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _M(Oxidation (M))LQIM(Oxidation (M))LLCF_ REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF 28.486842064014134 0.13043271994793734 2 C{I|L}{I|L} 3 -1 30.049 0 0 2.63 0 0 165.07879836250157 645.272739287756 810.3515376502576 0 0 0 0 0 1.9247425010840047 0 0 0 C{I|L}{I|L} 2.63 - 40 NaN NaN 132184.2 NaN 20541 4756 25297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25302 99.715 NaN 15917000 35 0 2708400 0.327 -1 0 51 444.2459044466084 886.4772559600168 2 444.2461242675781 MULTI HCD FTMS 0 0 0 25301 15053690 1 0 0 1 NaN NaN 2 T 1 -1 13.896 0 0 1.5675 0 0 189.04406092955043 593.3626987945858 782.4067597241362 0 0 0 0 0 0.7302046884880937 0 0.5 0 T 1.5675 - 28 + NaN NaN 782690.3 NaN 20542 4758 25301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25303 99.719 NaN 826970 35 0 143540 0.261 -1 AAVLAQSK 8 63 415.2439349341997 828.4733169351994 2 415.2438659667969 MULTI HCD FTMS 0 0 0 25301 432643.6875 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AAVLAQSK_ ARHGAP36|p.D494E|1|0.17|ENSG00000147256|chrX:131086661-131086661|T/A|missense_variant;ENSG00000147256|ENST00000276211|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-2|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-3|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-4|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36 2.302733041254933 0.5385759549224092 2 T 1 -1 19.292 0 0 2.3286 0 0 167.06155593086095 557.3414254159212 724.4029813467821 0 0 0 0 0 1 0 0.3807196863200844 0 T 2.3286 - 9 NaN NaN 227289 NaN 20543 4758 25301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25305 99.724 NaN 1063900 35 0 155270 0.411 + 17560 LYVLQVLTF 9 92 548.3263209168332 1094.6380889004663 2 548.3265991210938 MULTI HCD FTMS 0 0 0 25304 540973.875 0.31054496743963905 -3 0.02417755126953125 1 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 181.3275282027936 9.859558525874733E-13 2 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 108.1 0 0 9.8756 9.8756 96.496 0 0 0 15.440928640144534 34.76403468139864 15.440928640144534 16.276362525516532 0 3.079689690656103 1.3979400086720375 0.4247425010840047 1.0484550065040281 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}VQ{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q{I|L}VT{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}V[VG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]V{M(Oxidation (M))|F}[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}V[AG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]{I|L}VT{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{I|L}Q{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}QV[{M(Oxidation (M))|F}T]{I|L} 9.8756;8.3887;8.3275;8.0766;7.3679;7.1653;6.9089;6.8478;6.3989;6.3355 +;-;-;-;-;-;-;-;-;- + 1260 NaN NaN 412004.8 NaN 20544 4759 25304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25307 99.732 NaN 67375000 35 0 23779000 0.327 + 26533 SVLILASY 8 57 433.25468628645314 864.4948196397063 2 433.25653076171875 MULTI HCD FTMS 0 0 0 25306 73142336 0.7563627579451746 2 -0.047088623046875 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 T 1 8 17.034 0 0 1.9704 0 0 596.3856164824325 164.0387362115844 760.4243526940169 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 14 + NaN NaN 2044889.6 NaN 20545 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25308 99.736 NaN 6339800 35 0 1158000 0.261 + 31201 VVLLPGSY 8 59 424.2499450842295 846.4853372352591 2 424.2510070800781 MULTI HCD FTMS 0 0 0 25306 3237179 0.6362068758820568 2 -0.047088623046875 2 Unmodified _VVLLPGSY_ REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF 5.760428011301431 0.5334459684533844 2 T 1 -1 18.227 0 0 2.1532 0 0 578.3752789892136 164.0399486947305 742.4152276839441 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 19 NaN NaN 1048854.8 NaN 20546 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25309 99.739 NaN 1071400 35 0 462950 0.261 + 30915 VRASNGYS 8 62 427.2130266066168 NaN 0 427.2248840332031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VRASNGYS_ REV__ENSG00000040731|ENST00000264463|CDH10 2.0597508629832335 0.38822285293237185 2 T 1 -1 3.0989 0 0 0.36355 0 0 584.3021540063629 164.03847681217033 748.3406308185332 0 0 0 0 0 0 0 0 0 T 0.36355 - 15 + NaN NaN 255477.7 NaN 20547 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25310 99.743 NaN 146300 35 0 10452 0.261 + 19655 NVIRATRPALP 11 60 604.3665723327202 1206.7185917322404 2 604.3675537109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NVIRATRPALP_ REV__ENSG00000181408|ENST00000313135|UTS2R 2.735195868890462 0.4069250265843076 2 C(Carbamidomethyl (C)) 1 -1 13.495 0 0 1.1183 0 0 1028.6743087505981 0 1028.6743087505981 0 10 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 1.1183 - 9 + NaN NaN 107336.2 NaN 20548 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25311 99.746 NaN 337810 35 0 73128 0.262 -1 LLLLSPVPM 9 58 512.809273823024 1023.603994712848 2 512.810302734375 MULTI HCD FTMS 0 0 0 25306 194856.75 0.41061628107749587 -5 0.03853607177734375 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLLLSPVPM_ ENST00000518797.5_2_5:149781805-149781832:-|nuORF 2.302733041254933 0.33356062215410776 2 {I|L}P 2 -1 20.969 0 0 2.0486 0 0 795.4557396012606 0 795.4557396012606 0 20.969100130080562 0 0 0 0 0 0 0 {I|L}P 2.0486 - 10 NaN NaN 136879.9 NaN 20549 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25312 99.749 NaN 219970 35 0 23699 0.261 -1 DYMNLLGMIF 10 50 624.7864044952058 NaN 0 624.7872314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 20.41453444215458 0.2772770459383961 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L} 4 -1 19.253 0 0 1.5432 0 0 165.0817050688077 649.2291985898554 814.3109036586632 0 0 0 0 0 1.305462187404089 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L} 1.5432 + + 25 + NaN NaN 137592.8 NaN 20550 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25313 99.753 NaN 226730 35 0 38689 0.261 + 7511 FWPPYVELL 9 54 582.3105135703825 1162.6064742075648 2 582.311279296875 MULTI HCD FTMS 0 0 0 25306 188854.671875 1 0 0 7 Unmodified _FWPPYVELL_ ENSG00000123219|ENST00000396679|CENPK 42.09456458481378 0.05572955244001856 2 VE{I|L}{I|L} 4 5 46.186 0 0 3.9726 0 0 690.317867345956 0 690.317867345956 0 40.70107520596089 0 0 0 1.4247425010840047 0 0 0 + VE{I|L}{I|L} 3.9726 + + 95 NaN NaN 134879.7 NaN 20551 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25314 99.756 NaN 121570 35 0 19407 0.261 + 17454 LYSILSIKF 9 49 542.3253162906101 NaN 0 542.3248291015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _LYSILSIKF_ REV__tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1 24.020572477871973 0.16041128140741606 2 S 1 -1 10.485 0 0 0.96843 0 0 719.457046300167 273.1246431940063 992.5816894941734 0 0 0 0 0 0.5 0 0 0 S 0.96843 + + 26 + NaN NaN 115898.8 NaN 20552 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25315 99.759 NaN 217080 35 0 69198 0.261 -1 FYPFGCLG 8 42 480.7164402691596 NaN 0 480.7169189453125 PEAK HCD FTMS 0 0 0 25306 75134.9296875 1 0 0 9 Carbamidomethyl (C) _FYPFGC(Carbamidomethyl (C))LG_ ENST00000537473.2_1_12:57081489-57081642:-|nuORF 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114966.7 NaN 20553 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25316 99.763 NaN 165830 35 0 55154 0.261 -1 0 44 468.2591898483589 467.2519133817589 1 468.62762451171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 10 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 134367.6 NaN 20554 4760 25306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25318 99.767 NaN 75071000 35 0 34037000 0.326 + 26534 SVLILASY 8 41 433.25468628645314 864.4948196397063 2 433.255126953125 MULTI HCD FTMS 0 0 0 25317 60000596 0.6204644088604747 3 -0.04288482666015625 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 T 1 8 17.034 0 0 1.9704 0 0 596.3858008743617 164.03859888248283 760.4243997568445 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 - 15 + NaN NaN 740299.4 NaN 20555 4761 25317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25319 99.772 NaN 9203600 35 0 4986300 0.193 + 17829 MHGDVFNV 8 45 459.7106678545693 917.4067827759386 2 459.7106018066406 MULTI HCD FTMS 0 0 0 25317 4100654 0.6435036544001215 3 -0.04288482666015625 2 Unmodified _MHGDVFNV_ REV__tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 4.75600775471527 0.5349361699807423 2 T 1 -1 8.8515 0 0 0.96484 0 0 649.2983671038668 164.03864465885002 813.3370117627168 0 0 0 0 0 0.4247425010840047 0 0 0 T 0.96484 - 13 + NaN NaN 861790 NaN 20556 4761 25317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25320 99.774 NaN 623820 35 0 129260 0.261 + 21199 PQMPAPPH 8 67 437.71522191402795 873.4158908948559 2 437.7149658203125 MULTI HCD FTMS 0 0 0 25317 232170.328125 0.5161452160741592 5 -0.06821441650390625 3 Unmodified _PQMPAPPH_ ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4 2.577480529830294 0.5381683276125971 2 D 1 8 5.4846 0 0 0.62794 0 0 127.11000596690151 628.2632569255061 755.3732628924076 0 0 0 0 0 0 0 0 0 D 0.62794 - 58 + NaN NaN 179574.8 NaN 20557 4761 25317 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25322 99.779 NaN 7788100 35 0 1564500 0.327 + 31202 VVLLPGSY 8 64 424.2499450842295 846.4853372352591 2 424.24993896484375 MULTI HCD FTMS 0 0 0 25321 3929821 0.7723326826183231 4 -0.05670166015625 1 Unmodified _VVLLPGSY_ REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF 5.760428011301431 0.5334459684533844 2 T 1 -1 18.227 0 0 2.1532 0 0 578.3747952296188 164.04028709512957 742.4150823247484 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 20 NaN NaN 897952.8 NaN 20558 4762 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25323 99.783 NaN 6521000 35 0 3379200 0.254 -1 0 75 452.2281780403194 902.4418031474388 2 452.2283020019531 MULTI HCD FTMS 0 0 0 25321 3908703.5 0.6918322555637073 4 -0.05670166015625 2 NaN NaN 2 MHM 3 -1 15.445 0 0 1.7115 0 0 73.96806698774976 426.29737933634425 500.265446324094 0 0 0 0 0 0.5752574989159953 0 0 0 MHM 1.7115 - 36 + NaN NaN 1025086.8 NaN 20559 4762 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25324 99.787 NaN 4313500 35 0 1358900 0.261 + 10323 ILPGVVTSP 9 60 441.7681498872293 881.5217468412586 2 441.7682800292969 MULTI HCD FTMS 0 0 0 25321 3756146.25 0.7338176647416099 4 -0.05670166015625 3 Unmodified _ILPGVVTSP_ ENSG00000177992|ENST00000325643|SPATA31E1 4.75600775471527 0.31496297302216103 2 MT 2 8 10.445 0 0 1.1849 0 0 53.04869813334387 593.3625206782011 646.411218811545 0 0 0 0 0 0 0 0.4247425010840047 0 MT 1.1849 - 21 + NaN NaN 760878.1 NaN 20560 4762 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25325 99.79 NaN 2679400 35 0 219770 0.232 + 35542 YYGPLNLLTF 10 88 600.818946657316 1199.623340381432 2 600.8191528320312 MULTI HCD FTMS 0 0 0 25321 4677907.5 0.8160221743321586 9 -0.10955810546875 4 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 157.7952019732125 1.3404113081044716E-08 2 YYGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F} 10 0 + 99.761 0 0 8.316 8.316 94.466 0 0 0 4.816759732431706 4.816759732431706 4.816759732431706 13.981299217930953 0 2.860924374808178 1.6989700043360187 0.3807196863200844 1.6989700043360187 + + YYGP{I|L}N{I|L}{I|L}T{M(Oxidation (M))|F};YYGP{I|L}GG{I|L}{I|L}T{M(Oxidation (M))|F};YYGP{I|L}[{I|L}V]QT{M(Oxidation (M))|F};[{I|L}T]{I|L}[YK][WE]T{M(Oxidation (M))|F};YYGP{I|L}[{I|L}V][AG]T{M(Oxidation (M))|F};YYGPT[YK]{I|L}[VP];[{I|L}T]{I|L}[YK]T[WE]{M(Oxidation (M))|F} 8.316;7.1505;4.3525;3.8719;3.5886;2.9979;2.412 +;-;-;-;-;-;- + 842 NaN NaN 421560 NaN 20561 4762 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25326 99.793 NaN 2724500 35 0 399580 0.263 -1 0 68 455.2369352764422 908.4593176196844 2 455.23699951171875 MULTI HCD FTMS 0 0 0 25321 2101390.75 0.6432897586328793 2 -0.0313720703125 5 NaN NaN 2 T 1 -1 16.722 0 0 1.8407 0 0 189.04336745429845 615.3456450945469 804.3890125488454 0 0 0 0 0 1 0 0.2742275032520141 0 T 1.8407 - 21 NaN NaN 519191.7 NaN 20562 4762 25321 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25328 99.798 NaN 298960 35 0 34723 0.327 + 11542 IYSINLLLI 9 58 531.3340439549612 1060.6535349767223 2 531.3345947265625 MULTI HCD FTMS 0 0 0 25327 263721.125 0.31468243015429254 10 -0.1233367919921875 1 Unmodified _IYSINLLLI_ ENSG00000111371|ENST00000398637|SLC38A1 49.93300154707207 0.03166451819912738 2 {I|L}{I|L}[YV]TN{I|L}{I|L}{I|L} 9 4 + 52.15 0 0 4.9168 4.9168 83.139 0 0 0 2.1669877129644988 15.951841566953036 2.1669877129644988 2.1669877129644988 0 0.9247425010840047 1.154901959985743 1.2302046884880937 0 {I|L}{I|L}[YV]TN{I|L}{I|L}{I|L};[Y{I|L}]{[DA]|[EG]}K{I|L}{I|L}{I|L}{I|L};{I|L}{I|L}[YV]TGG{I|L}{I|L}{I|L};[Y{I|L}][{I|L}V]TN{I|L}{I|L}{I|L};[Y{I|L}][{I|L}V]TGG{I|L}{I|L}{I|L} 4.9168;4.7124;4.0486;3.5988;2.7306 -;-;-;-;- 254 NaN NaN 148022.5 NaN 20563 4763 25327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25329 99.802 NaN 151150 35 0 18403 0.261 + 32881 WYPLHFTF 8 51 555.7753275584349 1109.5361021836698 2 556.2791137695312 MULTI HCD FTMS 0 0 0 25327 38107.7734375 0.12152298365763578 -13 0.1807861328125 2 Unmodified _WYPLHFTF_ REV__ENSG00000178358|ENST00000317834|OR2D3 9.347437153973935 0.5250182646323369 2 W{I|L}{M(Oxidation (M))|F} 3 -1 24.693 0 0 2.2255 0 0 645.2948434940198 0 645.2948434940198 0 13.01029995663981 0 0 0 0 0 0 0 W{I|L}{M(Oxidation (M))|F} 2.2255 - 50 + NaN NaN 111466.4 NaN 20564 4763 25327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25330 99.806 NaN 188820 35 0 14934 0.261 + 15225 LNVVFVILD 9 76 516.3102839908266 NaN 0 516.3103637695312 PEAK HCD FTMS 0 0 0 25327 44443.75 0.525974473854479 1 -0.0126190185546875 3 Unmodified _LNVVFVILD_ REV__CENPM|p.H73Y|1|0.12|ENSG00000100162|chr22:41945926-41945926|G/A|missense_variant;REV__ENSG00000100162|ENST00000215980|CENPM;REV__ENST00000396437.3_1_22:42341142-42343146:-|nuORF;REV__nc|ENSG00000100162|Q9NSP4-2|CENPM;REV__nc|ENSG00000100162|Q9NSP4-4|CENPM 1.844237919475145 0.28630992268396543 2 K 1 -1 2.4743 0 0 0.24008 0 0 532.3020427357563 367.1966951959594 899.4987379317158 0 0 0 0 0 0 0 0 0 K 0.24008 - 1 + NaN NaN 128686.8 NaN 20565 4763 25327 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25332 99.81 NaN 2416900 35 0 495110 0.327 + 27488 SYYGPLNLLTF 11 103 644.3346538327479 1286.6547547322957 2 644.8167724609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 182.23686146844372 5.724201122326442E-14 2 [YN]{M(Oxidation (M))|F}EVAA{I|L}{I|L}T{M(Oxidation (M))|F} 11 6 + 92.781 0 0 7.211 7.211 88.771 0 0 0 16.020599913279625 15.070623213458035 15.070623213458035 6.575773191777941 0 1.1307196863200843 1.3010299956639813 1.1120155761587909 1.9163865622122673 [YN]{M(Oxidation (M))|F}EVAA{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}E[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]NEVAA{I|L}{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]NE[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YNVAA{I|L}{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]ENVAA{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}AA{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]Y{I|L}QN{I|L}{I|L}T{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]YN[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]E{I|L}QN{I|L}{I|L}T{M(Oxidation (M))|F} 7.211;6.7;5.9659;5.4548;5.3919;5.2948;4.9474;4.9185;4.8808;4.8214 -;-;-;-;-;-;-;-;-;- 4342 NaN NaN 462518.1 NaN 20566 4764 25331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25333 99.815 NaN 635870 35 0 278140 0.264 + 28096 THVAVPET 8 61 427.2236496930462 852.4327464528924 2 427.2232971191406 MULTI HCD FTMS 0 0 0 25331 106207.296875 0.25624913057033455 6 -0.06557464599609375 2 Unmodified _THVAVPET_ ATP11B-TFRC|1|fusion;ATP11B|p.W311Lfs*4|1|0.21|ENSG00000058063|chr3:182857956-182857957|-/T|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B 4.75600775471527 0.5349361699807423 2 T 1 7 6.0302 0 0 0.70741 0 0 393.30461642535175 355.05808435611567 748.3627007814674 0 0 0 0 0 0.4247425010840047 0 0 0 + T 0.70741 + + 24 + NaN NaN 184790.7 NaN 20567 4764 25331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25334 99.818 NaN 639050 35 0 108980 0.261 + 20866 PIIFATAP 8 62 415.2439349341997 828.4733169351994 2 415.2440490722656 MULTI HCD FTMS 0 0 0 25331 110785.671875 0.2560667705916777 6 -0.06557464599609375 3 Unmodified _PIIFATAP_ REV__ENSG00000185513|ENST00000418998|L3MBTL1;REV__nc|ENSG00000185513|Q9Y468|L3MBTL1 0.7936320650641473 0.540814922690045 2 T 1 -1 18.979 0 0 2.2909 0 0 167.06143386054845 557.3417000741243 724.4031339346727 0 0 0 0 0 1 0 0.3494850021680094 0 T 2.2909 + + 15 NaN NaN 189953.6 NaN 20568 4764 25331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25335 99.822 NaN 524670 35 0 74198 0.261 + 15778 LPGLLGGAPLT 11 77 504.8093125450024 NaN 0 504.8089599609375 PEAK HCD FTMS 0 0 0 25331 27783.818359375 0.0798693773540311 9 -0.1107177734375 4 Unmodified _LPGLLGGAPLT_ nc|ENSG00000185736|Q9NS39-2|ADARB2 41.8396318013385 0.14417979187234556 2 PVA{I|L}{M(Oxidation (M))|F} 5 8 33.012 0 0 3.2762 0 0 113.08670502765445 364.1849459283813 477.2716509560357 0 0 0 0 0 1.4049471895720984 0 0 0 PVA{I|L}{M(Oxidation (M))|F} 3.2762 - 45 + NaN NaN 185813.3 NaN 20569 4764 25331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25337 99.826 NaN 654350 35 0 60791 0.327 + 10645 IPVAIFITL 9 60 493.8179627478947 985.6213725625894 2 493.8184509277344 MULTI HCD FTMS 0 0 0 25336 502440.03125 0.3707065079853441 12 -0.17830657958984375 1 Unmodified _IPVAIFITL_ ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENST00000488002.5_1_3:179322588-179334847:+|nuORF 53.57557251787612 0.02656881086235134 2 {I|L}T{I|L} 3 6 38.94 0 0 3.9508 0 0 640.3942195813971 0 640.3942195813971 0 14.114911554500367 0 0 0 0.8494850021680094 0 0.4247425010840047 0 + {I|L}T{I|L} 3.9508 + + 75 NaN NaN 185033.2 NaN 20570 4765 25336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25338 99.831 NaN 194000 35 0 23439 0.261 -1 MTLGSYCS 8 54 488.68992130686985 NaN 0 488.6897888183594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))TLGSYC(Carbamidomethyl (C))S_ ENST00000552269.5_1_12:47604503-47610169:-|nuORF;ENST00000552975.5_1_12:47599848-47610169:-|nuORF 2.302733041254933 0.38822285293237185 2 T 1 -1 8.9794 0 0 0.92062 0 0 685.2743910983116 186.02047144107658 871.2948625393882 0 0 0 0 0 0.5 0 0 0 T 0.92062 + + 1 + NaN NaN 116572.5 NaN 20571 4765 25336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25340 99.835 NaN 7859500 35 0 1267600 0.327 -1 0 55 444.2459044466084 886.4772559600168 2 444.24609375 MULTI HCD FTMS 0 0 0 25339 3871719 0.25719401688223953 8 -0.1147613525390625 1 NaN NaN 2 T 1 -1 13.896 0 0 1.5675 0 0 189.043740060296 593.3630770062449 782.406817066541 0 0 0 0 0 0.7302046884880937 0 0.5 0 T 1.5675 - 17 + NaN NaN 954834.6 NaN 20572 4766 25339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25341 99.84 NaN 203220 35 0 15120 0.261 + 19656 NVIRATRPALP 11 67 604.3665723327202 1206.7185917322404 2 604.3660278320312 MULTI HCD FTMS 0 0 0 25339 199958.296875 0.8763077426637573 -3 0.0379486083984375 2 Unmodified _NVIRATRPALP_ REV__ENSG00000181408|ENST00000313135|UTS2R 2.735195868890462 0.4069250265843076 2 {M(Oxidation (M))|F} 1 -1 5.401 0 0 0.44758 0 0 440.2635542955765 616.3476656549436 1056.61121995052 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F} 0.44758 - 7 + NaN NaN 124149.2 NaN 20573 4766 25339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25342 99.843 NaN 357000 35 0 23722 0.261 + 11010 IYEPNFIFF 9 62 595.3001988742941 1188.585844815388 2 595.3004150390625 MULTI HCD FTMS 0 0 0 25339 96888.984375 0.6072922133752082 1 -0.01248931884765625 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 39.94969957227396 0.06557568441294001 2 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 50.397 0 0 4.2401 4.2401 90.449 0 0 0 10.413186301869167 28.11684195386693 10.413186301869167 50.396998125399115 0 1.75 1.2218487496163564 0 0 + + [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2401 + + 83 NaN NaN 145113 NaN 20574 4766 25339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25344 99.848 NaN 603940 35 0 90434 0.327 + 17561 LYVLQVLTF 9 57 548.3263209168332 1094.6380889004663 2 548.3265380859375 MULTI HCD FTMS 0 0 0 25343 304165.5625 0.1746056308224163 5 -0.0597076416015625 1 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 123.45060196383646 0.0010021686353097689 2 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 100.65 0 0 9.1951 9.1951 95.247 0 0 0 18.65279269351241 60.53009725027536 18.65279269351241 12.781512503836439 0 2.774227503252014 1.3010299956639813 0.4247425010840047 0.7059771852360797 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}VQ{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}V[VG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}V[AG]{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{I|L}Q{I|L}T{M(Oxidation (M))|F};[Y{I|L}][{I|L}A][VG]V{I|L}T{M(Oxidation (M))|F};[{I|L}T]{M(Oxidation (M))|F}{I|L}{I|L}[AG]{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q[{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}VNV[Y{I|L}] 9.1951;8.0275;7.709;6.9747;6.5413;6.2912;5.6091;4.805;3.7097;3.5441 +;-;-;-;-;-;-;-;-;- + 377 NaN NaN 183903.2 NaN 20575 4767 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25345 99.853 NaN 299090 35 0 93306 0.261 + 32703 WPLPPDWPL 9 59 560.7949230768537 1119.5752932205073 2 561.2963256835938 MULTI HCD FTMS 0 0 0 25343 42797.7265625 0.82657738963514 -1 0.01248931884765625 2 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 21.74664581756881 0.17247014374749275 2 WP{I|L} 3 6 34.45 0 0 3.0771 0 0 705.3481574121504 0 705.3481574121504 0 28.96591250700361 0 0 0 0.8252574989159953 0 0 0 + WP{I|L} 3.0771 + + 127 NaN NaN 129014 NaN 20576 4767 25343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25347 99.857 NaN 195890 35 0 29648 0.327 + 35342 YWVSVWPVL 9 54 574.8107179827348 NaN 0 574.8102416992188 PEAK HCD FTMS 0 0 0 25346 116332.75 0.7305617703442571 5 -0.06353759765625 1 Unmodified _YWVSVWPVL_ ENST00000427419.5_2_2:190445193-190446742:-|nuORF;ENST00000455320.5_2_2:190446526-190446742:-|nuORF 16.942295170755138 0.2079222001251384 2 {M(Oxidation (M))|F} 1 9 14.732 0 0 1.2837 0 0 513.2956986260449 484.21930872135005 997.5150073473949 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F} 1.2837 - 13 + NaN NaN 112130.7 NaN 20577 4768 25346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25348 99.862 NaN 199940 35 0 27202 0.261 + 34746 YPWSIPFTL 9 57 562.2948872067891 1122.575221480378 2 562.2951049804688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YPWSIPFTL_ ENSG00000147697|ENST00000276708|GSDMC 26.88365393820708 0.12808753336095696 2 T{I|L} 2 7 20.217 0 0 1.8009 0 0 890.4344959943375 0 890.4344959943375 0 11.17545637883161 0 0 0 0.2742275032520141 0 0 0 + T{I|L} 1.8009 + + 40 NaN NaN 121935.6 NaN 20578 4768 25346 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25350 99.866 NaN 435180 35 0 186480 0.327 + 18347 MPIVLELIP 9 49 512.809273823024 1023.603994712848 2 512.8096313476562 MULTI HCD FTMS 0 0 0 25349 400379.5 0.8437087312072445 4 -0.05438995361328125 1 Unmodified _MPIVLELIP_ ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF 15.847184025352803 0.2234401846867398 2 E{I|L}{I|L}P 4 5 33.972 0 0 3.3189 0 0 553.3292713849625 0 553.3292713849625 0 31.49797211252192 0 0 0 0.805462187404089 0 0 0 + E{I|L}{I|L}P 3.3189 + + 25 NaN NaN 157600.6 NaN 20579 4769 25349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25351 99.871 NaN 242950 35 0 27960 0.262 + 21289 PRTLALRERL 10 77 408.9223364100256 1223.7451798302768 3 408.9222412109375 MULTI HCD FTMS 0 0 0 25349 181221.828125 0.7015270323146363 6 -0.09888458251953125 2 Unmodified _PRTLALRERL_ ENSG00000135451|ENST00000257909|TROAP 3.5870582119611467 0.4563168352879256 2 A 1 9 3.0989 0 0 0.25323 0 0 589.3684230937519 560.3272799127561 1149.695703006508 0 0 0 0 0 0 0 0 0 + A 0.25323 + + 15 + NaN NaN 124897.7 NaN 20580 4769 25349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25353 99.876 NaN 145740 35 0 18864 0.327 + 29359 TYPSPDIFLVI 11 49 632.8449177535192 1263.6752825738383 2 632.8465576171875 MULTI HCD FTMS 0 0 0 25352 23436.845703125 0.2489174691920768 1 -0.01261138916015625 1 Unmodified _TYPSPDIFLVI_ DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant;ENSG00000130158|ENST00000294618|DOCK6 45.69961567697781 0.10024274243180704 2 {M(Oxidation (M))|F}{I|L}V{I|L} 4 7 45.191 0 0 3.5761 0 0 773.3587975614178 0 773.3587975614178 0 43.20107520596089 0 0 0 1.3252574989159953 0 0 0 + {M(Oxidation (M))|F}{I|L}V{I|L} 3.5761 + + 49 NaN NaN 116731.9 NaN 20581 4770 25352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25354 99.88 NaN 91660 35 0 10180 0.261 + 13681 KYPENFFLL 9 37 585.8133180602279 NaN 0 585.8135375976562 PEAK HCD FTMS 0 0 0 25352 41096.1640625 0.5213447923341049 1 -0.01261138916015625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 8 12.206 0 0 1.0436 0 0 131.09546339136097 775.3425387018186 906.4380020931796 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.0436 - 7 + NaN NaN 103740.6 NaN 20582 4770 25352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25355 99.884 NaN 254300 35 0 144360 0.261 -1 KQVEAGVCVTM 11 42 619.3004817040854 NaN 0 619.3163452148438 PEAK HCD FTMS 0 0 0 25352 9427.00390625 0.7300525513698772 -1 0.009246826171875 3 Carbamidomethyl (C),Oxidation (M) _KQVEAGVC(Carbamidomethyl (C))VTM(Oxidation (M))_ ENSG00000159079|ENST00000290155|CFAP298;ENST00000483315.1_1_21:33975401-33976611:-|nuORF 4.189502756095605 0.3302357306631285 2 TVD 3 -1 16.198 0 0 1.3099 0 0 165.04839885563325 753.3717745416624 918.4201733972957 0 0 0 0 0 0 0 0 0 TVD 1.3099 - 11 + NaN NaN 148610.6 NaN 20583 4770 25352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25357 99.889 NaN 21384000 35 0 9556700 0.327 + 31095 VTGIILSY 8 49 433.25468628645314 864.4948196397063 2 433.2554626464844 MULTI HCD FTMS 0 0 0 25356 17196460 0.17782809004751882 13 -0.2627410888671875 1 Unmodified _VTGIILSY_ REV__tr|U7STP9|U7STP9_FUSNUInnermembraneproteinYbhLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01143PE=3SV=1 13.50788311687929 0.4944073034352369 2 T 1 -1 17.034 0 0 1.9704 0 0 596.3858277122268 164.0385683649047 760.4243960771315 0 0 0 0 0 0.805462187404089 0 0.3494850021680094 0 T 1.9704 + + 13 + NaN NaN 858478.6 NaN 20584 4771 25356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25358 99.893 NaN 450530 35 0 48752 0.261 -1 0 63 403.58114819712694 1207.721615191581 3 403.5816345214844 MULTI HCD FTMS 0 0 0 25356 74362.0859375 0.42548788735844595 3 -0.0619049072265625 2 NaN NaN 2 P 1 -1 4.6041 0 0 0.38122 0 0 987.5908148759544 120.05047784976796 1107.6412927257225 0 0 0 0 0 0 0 0 0 P 0.38122 - 12 + NaN NaN 162354.2 NaN 20585 4771 25356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25359 99.896 NaN 109510 35 0 11707 0.261 + 6296 FPFPFTPYSI 10 49 608.3078499335131 1214.6011469338262 2 608.3077392578125 MULTI HCD FTMS 0 0 0 25356 61364.6875 0.7418187890001972 2 -0.03253173828125 3 Unmodified _FPFPFTPYSI_ DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;ENSG00000013573|ENST00000542838|DDX11;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8 29.081581746732265 0.240155558137004 2 T{[QG]|[NA]}{M(Oxidation (M))|F}VW 6 9 32.88 0 0 2.7071 0 0 478.241991111525 0 478.241991111525 0 7.663800089887545 0 0 0 1.3494850021680094 0 0 0 T{[QG]|[NA]}{M(Oxidation (M))|F}VW 2.7071 - 61 NaN NaN 114936.5 NaN 20586 4771 25356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25360 99.9 NaN 125900 35 0 18711 0.261 + 7512 FWPPYVELL 9 48 582.3105135703825 1162.6064742075648 2 582.311279296875 MULTI HCD FTMS 0 0 0 25356 46626.9453125 0.24689325844881221 9 -0.1781768798828125 4 Unmodified _FWPPYVELL_ ENSG00000123219|ENST00000396679|CENPK 30.224811164608877 0.11021837014094292 2 VE{I|L}{I|L} 4 5 41.186 0 0 3.5425 0 0 690.3139515607437 0 690.3139515607437 0 33.738350322034236 0 0 0 0.9247425010840047 0 0 0 + VE{I|L}{I|L} 3.5425 + + 125 NaN NaN 115804.1 NaN 20587 4771 25356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25361 99.903 NaN 95676 35 0 20904 0.261 + 35916 YYTFLTGSLL 10 36 589.3103531087055 1176.606153284211 2 589.31201171875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YYTFLTGSLL_ REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 14.838274106304384 0.3723198072575719 2 YY{I|L} 3 -1 27.447 0 0 2.3327 0 0 0 734.3848971002561 734.3848971002561 1.478174818886373 0 0 0 0 0 1.6989700043360187 0 0 YY{I|L} 2.3327 - 4 + NaN NaN 111462.1 NaN 20588 4771 25356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25363 99.908 NaN 1808200 35 0 977490 0.327 + 17830 MHGDVFNV 8 48 459.7106678545693 917.4067827759386 2 459.7106628417969 MULTI HCD FTMS 0 0 0 25362 637619.4375 0.1000597558701124 14 -0.2826080322265625 1 Unmodified _MHGDVFNV_ REV__tr|U7SSS3|U7SSS3_FUSNUToxin-antitoxinsystemYwqKfamilyantitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01474PE=4SV=1 4.75600775471527 0.5349361699807423 2 {[YD]|[{M(Oxidation (M))|F}M]}Y[HA]{[{M(Oxidation (M))|F}C]|[YS]} 7 -1 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0 0 0.5 0 {[YD]|[{M(Oxidation (M))|F}M]}Y[HA]{[{M(Oxidation (M))|F}C]|[YS]} 0 - 6 NaN NaN 362759.8 NaN 20589 4772 25362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25364 99.913 NaN 1509800 35 0 331810 0.261 + 31203 VVLLPGSY 8 50 424.2499450842295 846.4853372352591 2 424.2498474121094 MULTI HCD FTMS 0 0 0 25362 566170 0.11127010490249199 14 -0.2826080322265625 2 Unmodified _VVLLPGSY_ REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF 5.760428011301431 0.5334459684533844 2 T 1 -1 18.227 0 0 2.1532 0 0 578.3748199606783 164.04054045298315 742.4153604136615 0 0 0 0 0 0.9247425010840047 0 0.5 0 T 2.1532 - 11 NaN NaN 313333 NaN 20590 4772 25362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25365 99.916 NaN 154590 35 0 27732 0.261 + 12004 KGGWPQVC 8 54 437.71522191402795 873.4158908948559 2 437.7143249511719 MULTI HCD FTMS 0 0 0 25362 41159.41015625 0.09150278943976317 16 -0.3184051513671875 3 Unmodified _KGGWPQVC_ REV__ENST00000423414.5_1_7:130668839-130792560:-|nuORF 2.302733041254933 0.5385759549224092 2 {[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}[EP]{[CA]|SS} 8 -1 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}[EP]{[CA]|SS} 0 - 6 + NaN NaN 113128.5 NaN 20591 4772 25362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25367 99.921 NaN 611690 35 0 58074 0.327 + 35543 YYGPLNLLTF 10 61 600.818946657316 1199.623340381432 2 600.8193969726562 MULTI HCD FTMS 0 0 0 25366 532622.8125 0.0929116331511813 20 -0.3863525390625 1 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 126.56589448801843 2.6506179816573442E-05 2 QGQQ{I|L}{I|L}T{M(Oxidation (M))|F} 8 5 53.37 0 0 4.4489 0 0 266.1262797159924 0 266.1262797159924 0 22.427834771286186 0 0 0 1 0 0.3807196863200844 1.6989700043360187 QGQQ{I|L}{I|L}T{M(Oxidation (M))|F} 4.4489 - 266 NaN NaN 180528.1 NaN 20592 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25368 99.925 NaN 1082700 35 0 255060 0.264 + 10324 ILPGVVTSP 9 56 441.7681498872293 881.5217468412586 2 441.7683410644531 MULTI HCD FTMS 0 0 0 25366 365305.625 0.07136775375944807 15 -0.30521392822265625 2 Unmodified _ILPGVVTSP_ ENSG00000177992|ENST00000325643|SPATA31E1 4.75600775471527 0.31496297302216103 2 T[PS] 3 6 10.062 0 0 1.1414 0 0 578.3746235428401 0 578.3746235428401 0 1.1092437480817807 0 0 0 0 0 0.5 0 + T[PS] 1.1414 + + 28 NaN NaN 264052.2 NaN 20593 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25369 99.929 NaN 667300 35 0 85942 0.261 -1 0 53 455.2369352764422 908.4593176196844 2 455.2369384765625 MULTI HCD FTMS 0 0 0 25366 291918.75 0.08936383784306266 13 -0.26941680908203125 3 NaN NaN 2 T 1 -1 15.242 0 0 1.6778 0 0 189.04450204770575 615.3440209779794 804.3885230256851 0 0 0 0 0 0.8252574989159953 0 0 0 T 1.6778 - 19 + NaN NaN 197339.2 NaN 20594 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25370 99.932 NaN 124530 35 0 12592 0.261 -1 0 44 531.3336112937063 530.3263348271063 1 531.3343505859375 MULTI HCD FTMS 0 0 0 25366 13085.5751953125 0.13744549007115525 -4 0.05438995361328125 4 NaN NaN 2 {I|L}{I|L}{I|L}{I|L} 4 -1 10.802 0 0 2.0369 0 0 59.98033980933128 0 59.98033980933128 0 3.8122813092856234 0 0 0 0 0 0 0 {I|L}{I|L}{I|L}{I|L} 2.0369 - 15 + NaN NaN 113738.2 NaN 20595 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25371 99.936 NaN 67184 35 0 18485 0.261 + 23536 RNRRVTRRK 9 40 621.3935124949485 NaN 0 621.3934326171875 PEAK HCD FTMS 0 0 0 25366 17414.978515625 0.26186479394826934 3 -0.0673980712890625 5 Unmodified _RNRRVTRRK_ ENSG00000162490|ENST00000294485|DRAXIN 0.6014990680409731 0.29233206172879045 2 D 1 9 6.9897 0 0 0.56333 0 0 433.3738036990781 689.3339937799436 1122.7077974790218 0 0 0 0 0 0 0 0 0 D 0.56333 - 3 + NaN NaN 93260.5 NaN 20596 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25372 99.939 NaN 292080 35 0 33848 0.261 + 27012 SYLQSLLLF 9 51 542.3078345791419 1082.6011162250836 2 542.3082275390625 MULTI HCD FTMS 0 0 0 25366 102148.8515625 0.07340900563096163 -12 0.15360260009765625 6 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 89.40071534611396 0.0045416704840156395 2 [Y{I|L}]SQS{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 2 + 101.35 0 0 9.3615 9.3615 95.437 0 0 0 13.010299956639813 16.064921830680703 13.010299956639813 13.010299956639813 0 2.805462187404089 1.3010299956639813 1.1861818737241734 0.3807196863200844 [Y{I|L}]SQS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]S[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};[Y{I|L}]SQS{I|L}{I|L}{M(Oxidation (M))|F}{I|L};[Y{I|L}]S[AG]S{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 9.3615;8.1598;8.1593;7.8776;7.0271;6.9576;6.6759;5.8253 -;+;-;-;-;-;-;- + 224 NaN NaN 139817.1 NaN 20597 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25373 99.942 NaN 143150 35 0 30064 0.261 + 28112 TIHPGTSTTMI 11 39 579.7950147695155 1157.575476605831 2 579.2935791015625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _TIHPGTSTTMI_ ENSG00000164347|ENST00000296805|GFM2;nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2 4.897010918128616 0.3974440401582579 2 {I|L} 1 10 6.1092 0 0 0.52776 0 0 681.3131607872748 360.16062341861567 1041.4737842058905 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.52776 + + 5 + NaN NaN 112459.7 NaN 20598 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25374 99.946 NaN 59281 35 0 6049.9 0.261 + 28694 TSIFFEVEDY 10 34 625.283482236678 NaN 0 625.2874145507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _TSIFFEVEDY_ REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1 1.4819007175156935 0.33891598740166873 2 {I|L} 1 -1 6.9897 0 0 0.55982 0 0 653.250717070159 479.1962565406881 1132.4469736108472 0 0 0 0 0 0 0 0 0 {I|L} 0.55982 + + 6 + NaN NaN 95821.5 NaN 20599 4773 25366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25376 99.951 NaN 577900 35 0 116600 0.327 + 27489 SYYGPLNLLTF 11 69 644.3346538327479 1286.6547547322957 2 644.8165283203125 MULTI HCD FTMS 0 0 0 25375 30027.625 0.005710650425684403 36 -0.6456680297851562 1 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 60.899326713953855 0.03666125830841081 2 [YN]{M(Oxidation (M))|F}EVAA{I|L}{I|L}T{M(Oxidation (M))|F} 11 6 + 75.861 0 0 5.896 5.896 85.588 0 0 0 4.3753063169585005 15.07062321345802 4.3753063169585005 4.3753063169585005 0 1.2302046884880937 1.0969100130080565 0.5501648626366046 1.066901560044258 [YN]{M(Oxidation (M))|F}EVAA{I|L}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT}N{I|L}{I|L}T{M(Oxidation (M))|F};[YN]{M(Oxidation (M))|F}E[Q{I|L}]{I|L}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{[DS]|[MA]|[CV]|TT}GG{I|L}{I|L}T{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{M(Oxidation (M))|F}A{[CA]|SS}AA{I|L}{I|L}T{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}YG[{I|L}P]N{I|L}{I|L}T{M(Oxidation (M))|F};{[YC]|[HE]}{I|L}{I|L}NQK{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[YC]|[HE]}{I|L}[RV]VE{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}C]|[YS]}YG[{I|L}P]GG{I|L}{I|L}T{M(Oxidation (M))|F};{[YC]|[HE]}{I|L}{I|L}GGQK{M(Oxidation (M))|F}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.896;5.5559;5.3849;4.2546;4.2512;4.1592;3.4558;2.8585;2.8579;2.7435 -;-;-;-;-;+;-;-;-;- + 967 NaN NaN 184518.3 NaN 20600 4774 25375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25377 99.955 NaN 388520 35 0 53350 0.262 + 18571 MVNRYWEL 8 57 555.7753275584349 1109.5361021836698 2 556.278564453125 MULTI HCD FTMS 0 0 0 25375 169002.71875 0.538937670090746 -3 0.0619049072265625 2 Unmodified _MVNRYWEL_ REV__ENSG00000182601|ENST00000331351|HS3ST4;REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant 28.486842064014134 0.3788298654084067 2 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 -1 41.018 0 0 3.6969 0 0 131.10196966604957 0 131.10196966604957 0 13.137728966894713 0 0 0 0.3807196863200844 0 0 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 3.6969 - 214 + NaN NaN 154631.8 NaN 20601 4774 25375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25378 99.961 NaN 102970 35 0 7014.8 0.261 -1 LDDQSCUGS 9 50 516.6446086554233 NaN 0 516.6449584960938 PEAK HCD FTMS 0 0 0 25375 30389.060546875 0.6163504565308346 1 -0.0151214599609375 3 Carbamidomethyl (C) _LDDQSC(Carbamidomethyl (C))UGS_ ENSG00000162430|ENST00000361547|SELENON;nc|ENSG00000162430|Q9NZV5-2|SELENON 0.45834013312273997 0.29302578994899664 2 {I|L} 1 -1 4.6041 0 0 0.44645 0 0 326.90462150830905 588.2687278700158 915.1733493783249 0 0 0 0 0 0 0 0 0 {I|L} 0.44645 + + 7 + NaN NaN 121440.7 NaN 20602 4774 25375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25380 99.966 NaN 103830 35 0 6664.8 0.327 + 23722 RQRPLSILPQ 10 43 604.3665723327202 1206.7185917322404 2 604.3667602539062 MULTI HCD FTMS 0 0 0 25379 105455.84375 0.46215522852264446 6 -0.13381195068359375 1 Unmodified _RQRPLSILPQ_ REV__BRINP3|p.I513Ffs*25|1|0.16|ENSG00000162670|chr1:190098783-190098783|G/-|frameshift_variant;REV__BRINP3|p.K503Tfs*12|1|0.16|ENSG00000162670|chr1:190098801-190098811|TCTGTCCGTTT/-|frameshift_variant;REV__ENSG00000162670|ENST00000367462|BRINP3;REV__nc|ENSG00000162670|Q76B58-2|BRINP3 2.9952420565917617 0.4594494122822477 2 P 1 -1 11.99 0 0 0.99358 0 0 625.3735732769654 481.2655123346313 1106.6390856115968 0 0 0 0 0 0.5 0 0 0 P 0.99358 + + 13 + NaN NaN 118657 NaN 20603 4775 25379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25381 99.97 NaN 416490 35 0 41860 0.262 + 29644 VAPIIFLTI 9 60 493.81794397228117 NaN 0 493.8180236816406 PEAK HCD FTMS 0 0 0 25379 61029.6484375 0.15766598089987577 -2 0.04449462890625 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 46.92087301778293 0.05607980621763639 2 T{I|L} 2 -1 23.271 0 0 2.3611 0 0 131.09529421798135 637.3716524713499 768.4669466893313 0 0 0 0 0 0.805462187404089 0 0.4247425010840047 0 T{I|L} 2.3611 + + 20 + NaN NaN 172544.3 NaN 20604 4775 25379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25382 99.974 NaN 267560 35 0 58925 0.261 + 25277 SAVVEDLLYVL 11 46 610.8422793929841 1219.670005852768 2 610.8426513671875 MULTI HCD FTMS 0 0 0 25379 62416.6328125 0.12400473573349265 -2 0.04449462890625 3 Unmodified _SAVVEDLLYVL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 19.986897341741983 0.28293591992651296 2 {I|L}YV{I|L} 4 7 43.928 0 0 3.6016 0 0 713.3618641584 0 713.3618641584 0 32.69077524932108 0 0 0 1.3494850021680094 0 0 0 + {I|L}YV{I|L} 3.6016 + + 51 NaN NaN 130353.2 NaN 20605 4775 25379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25383 99.977 NaN 142640 35 0 16505 0.261 + 29360 TYPSPDIFLVI 11 37 632.8449177535192 1263.6752825738383 2 632.844970703125 MULTI HCD FTMS 0 0 0 25379 34914.00390625 0.3708137861976554 6 -0.13381195068359375 4 Unmodified _TYPSPDIFLVI_ DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant;ENSG00000130158|ENST00000294618|DOCK6 31.26834338654808 0.19318467762437158 2 C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}V{I|L} 5 7 43.756 0 0 3.4626 0 0 613.3255482404312 0 613.3255482404312 0 16.792972196075127 0 0 0 0.8807196863200843 0 0 0 C(Carbamidomethyl (C)){M(Oxidation (M))|F}{I|L}V{I|L} 3.4626 - 55 NaN NaN 112963.9 NaN 20606 4775 25379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25384 99.98 NaN 91219 35 0 8240.9 0.264 + -1 SNPRPMGV 8 44 437.2145822419818 NaN 0 437.2144470214844 PEAK HCD FTMS 0 0 0 25379 33081.33984375 0.5976728592627785 -39 0.5515594482421875 5 Oxidation (M) _SNPRPM(Oxidation (M))GV_ REV__ENST00000490729.1_1_12:119175913-119176300:-|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99672.3 NaN 20607 4775 25379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25385 99.984 NaN 148500 35 0 11654 0.261 + 20814 PHLRFPVF 8 46 506.79187647802314 1011.5692000228463 2 506.7908630371094 MULTI HCD FTMS 0 0 0 25379 13787.5380859375 0.20599656046924317 -5 0.08963775634765625 6 Unmodified _PHLRFPVF_ ENST00000409690.3_1_3:196438896-196439121:-|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 7 14.604 0 0 1.4437 0 0 846.4900049318292 0 846.4900049318292 0 11.505149978319906 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.4437 + + 7 + NaN NaN 140094.3 NaN 20608 4775 25379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25387 99.989 NaN 232820 35 0 21751 0.327 + 11011 IYEPNFIFF 9 51 595.3001988742941 1188.585844815388 2 595.3004150390625 MULTI HCD FTMS 0 0 0 25386 59266.78125 0.37147932757383484 11 -0.221588134765625 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 39.94969957227396 0.06557568441294001 2 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 58.852 0 0 4.9514 4.9514 91.691 0 0 0 16.86953709374329 32.68114684785509 16.86953709374329 58.85205927130549 0 1.7302046884880937 1.5228787452803376 0 0 + + [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.9514 + + 51 NaN NaN 142533.9 NaN 20609 4776 25386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25388 99.993 NaN 188030 35 0 22174 0.261 + 17562 LYVLQVLTF 9 51 548.3263209168332 1094.6380889004663 2 548.3260498046875 MULTI HCD FTMS 0 0 0 25386 75181.1953125 0.043157614312509 14 -0.26689910888671875 2 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 60.07390631473393 0.0174780869009295 2 [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F} 9 0 + 65.596 0 0 5.9924 5.9924 88.541 0 0 0 2.1729403109284817 55.13805019828801 2.1729403109284817 9.208187539523749 0 2.274227503252014 0 0 0 + + [Y{I|L}]V{I|L}QV{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}[AG]V{I|L}T{M(Oxidation (M))|F};[Y{I|L}]V{I|L}Q[{I|L}A][Y{I|L}];[Y{I|L}]V{I|L}{[NV]|[RG]}V[Y{I|L}];[Y{I|L}]V{I|L}[AG][{I|L}A][Y{I|L}] 5.9924;5.1512;1.928;1.1962;1.0868 +;-;-;-;- + 112 NaN NaN 115137.5 NaN 20610 4776 25386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25389 99.997 NaN 121800 35 0 15319 0.261 + 35917 YYTFLTGSLL 10 48 589.3103531087055 1176.606153284211 2 589.3101196289062 MULTI HCD FTMS 0 0 0 25386 34686.71484375 0.7413472052998842 2 -0.032501220703125 3 Unmodified _YYTFLTGSLL_ REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1 14.838274106304384 0.3723198072575719 2 {I|L}{I|L} 2 -1 25.969 0 0 2.2071 0 0 932.4280853460891 0 932.4280853460891 0 17.01667520279372 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2071 + + 12 NaN NaN 106810.7 NaN 20611 4776 25386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25390 100 NaN 147120 35 0 22652 0.261 + 3869 EPLCQADGWLK 11 47 630.3070927767054 1258.5996326202107 2 630.3074951171875 MULTI HCD FTMS 0 0 0 25386 14511.119140625 0.6073936348893472 -1 0.0229034423828125 4 Unmodified _EPLCQADGWLK_ REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF 4.189502756095605 0.4005469306127019 2 T{M(Oxidation (M))|F} 2 -1 22.831 0 0 1.814 0 0 992.4723988263687 0 992.4723988263687 0 15.841218823962109 0 0 0 0.4247425010840047 0 0 0 T{M(Oxidation (M))|F} 1.814 - 45 NaN NaN 112492.9 NaN 20612 4776 25386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25392 100 NaN 272040 35 0 102700 0.327 + -1 LDMPLLPLP 9 51 512.7913631622929 1023.5681733913858 2 512.8093872070312 MULTI HCD FTMS 0 0 0 25391 17458.9296875 1 0 0 1 Oxidation (M) _LDM(Oxidation (M))PLLPLP_ REV__ENSG00000171812|ENST00000397799|COL8A2 4.75600775471527 0.31496297302216103 2 {I|L}D 2 -1 21.454 0 0 2.096 0 0 0 792.4334850489518 792.4334850489518 11.989700043360187 0 0 0 0 0 0 0.3494850021680094 0 {I|L}D 2.096 + + 42 + NaN NaN 121190.2 NaN 20613 4777 25391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25393 100.01 NaN 248180 35 0 45430 0.261 + 5527 FLDRDLMTL 9 49 562.2948872067891 1122.575221480378 2 562.2952880859375 MULTI HCD FTMS 0 0 0 25391 91941.28125 0.727099980167446 8 -0.162933349609375 2 Unmodified _FLDRDLMTL_ ENSG00000066926|ENST00000262093|FECH;ENST00000585878.1_1_18:55240476-55253852:-|nuORF;ENST00000592111.1_1_18:55240476-55253852:-|nuORF;nc|ENSG00000066926|P22830-2|FECH 32.78568957990786 0.09846250359632436 2 {M(Oxidation (M))|F}PST{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L} 8 4 30.042 0 0 2.6762 0 0 214.13125807929845 0 214.13125807929845 0 19.240247145042062 0 0 0 1.3935078169319297 0 0.4247425010840047 0 {M(Oxidation (M))|F}PST{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}T{I|L} 2.6762 - 207 NaN NaN 119589.4 NaN 20614 4777 25391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25394 100.01 NaN 74028 35 0 7734.6 0.261 + 13623 KYPENFFLL 9 44 585.8131604594978 1169.6117679857955 2 585.8136596679688 MULTI HCD FTMS 0 0 0 25391 34163.6484375 0.5000472266196215 -10 0.15650177001953125 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 [YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 9 4 + 28.362 0 0 2.4249 2.4249 88.067 0 0 0 0.17483713393631106 28.362424760180435 0.17483713393631106 28.362424760180435 0 1 0 0 0 [YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 2.4249 - 14 NaN NaN 115118.1 NaN 20615 4777 25391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25395 100.02 NaN 132620 35 0 14354 0.261 -1 0 56 531.3336112937063 530.3263348271063 1 531.3329467773438 MULTI HCD FTMS 0 0 0 25391 95205.5625 1 0 0 4 NaN NaN 2 {I|L}{I|L}{I|L}{I|L} 4 -1 14.693 0 0 2.7705 0 0 59.98033980933128 0 59.98033980933128 0 7.703037561203843 0 0 0 0 0 0 0 {I|L}{I|L}{I|L}{I|L} 2.7705 - 9 + NaN NaN 114155.9 NaN 20616 4777 25391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25397 100.02 NaN 4067100 35 0 1767900 0.327 + 26535 SVLILASY 8 49 433.25468628645314 864.4948196397063 2 433.25494384765625 MULTI HCD FTMS 0 0 0 25396 1925000.75 0.019906376470072405 20 -0.39764404296875 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 T 1 8 16.792 0 0 1.9424 0 0 596.3858687099547 164.0385683649047 760.4244370748594 0 0 0 0 0 0.805462187404089 0 0.3252574989159953 0 T 1.9424 - 17 + NaN NaN 704134.9 NaN 20617 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25398 100.03 NaN 278940 35 0 41026 0.261 + 31310 VWNFPIDVTF 10 54 619.316458326321 1236.618363719442 2 619.3162841796875 MULTI HCD FTMS 0 0 0 25396 194721.125 0.57518927197859 1 -0.03610992431640625 2 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 83.42873516780209 0.0016734765818451427 2 {[RE]|[WV]}N{M(Oxidation (M))|F}P{I|L}DVT{M(Oxidation (M))|F} 10 0 + 83.875 0 0 6.7826 6.7826 89.18 0 0 0 3.177418734074564 67.67728766960431 3.177418734074564 9.164539485499262 0 2.5924778212679485 0 0.4247425010840047 1.1307196863200843 + + {[RE]|[WV]}N{M(Oxidation (M))|F}P{I|L}DVT{M(Oxidation (M))|F};{[RE]|[WV]}GG{M(Oxidation (M))|F}P{I|L}DVT{M(Oxidation (M))|F} 6.7826;6.0415 +;- + 143 NaN NaN 149489.8 NaN 20618 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25399 100.03 NaN 287010 35 0 32737 0.261 + 34944 YSLVTQQPLG 10 55 553.2983911363857 1104.5822293395713 2 553.2991943359375 MULTI HCD FTMS 0 0 0 25396 120490.59375 0.6973608996874925 1 -0.03610992431640625 3 Unmodified _YSLVTQQPLG_ tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 19.361941925380144 0.3300069447713393 2 {I|L}{I|L}SQ[TP]{M(Oxidation (M))|F} 7 7 46.872 0 0 4.2434 0 0 300.1456471173844 0 300.1456471173844 0 35.17683537374076 0 0 0 2.2302046884880937 0 0 0 {I|L}{I|L}SQ[TP]{M(Oxidation (M))|F} 4.2434 - 158 NaN NaN 146453.8 NaN 20619 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25400 100.03 NaN 180490 35 0 30810 0.261 + -1 VWYICCRFL 9 43 630.3070927767054 1258.5996326202107 2 630.3213500976562 MULTI HCD FTMS 0 0 0 25396 21245.322265625 0.8892679737696481 1 -0.03610992431640625 4 Carbamidomethyl (C) _VWYIC(Carbamidomethyl (C))CRFL_ REV__ENST00000485560.5_3_10:38146251-38146398:-|nuORF 4.75600775471527 0.31496297302216103 2 {I|L}{I|L}[HV]YE{I|L}{M(Oxidation (M))|F} 8 -1 33.621 0 0 2.6713 0 0 226.0950642316422 0 226.0950642316422 0 22.366166095917563 0 0 0 0 0 0 0 {I|L}{I|L}[HV]YE{I|L}{M(Oxidation (M))|F} 2.6713 - 52 NaN NaN 138863.2 NaN 20620 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25401 100.04 NaN 219900 35 0 24724 0.261 + 27448 SYVRELMTY 9 63 581.2847119622578 1160.5548709913155 2 581.285400390625 MULTI HCD FTMS 0 0 0 25396 68974.21875 0.9070124026269221 1 -0.03610992431640625 5 Unmodified _SYVRELMTY_ ENSG00000172728|ENST00000327671|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-2|FUT10;nc|ENSG00000172728|Q6P4F1-3|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;nc|ENSG00000172728|Q6P4F1-6|FUT10 16.149105407346934 0.22083165093524068 2 [YN]{I|L}HE{I|L}ME{I|L} 9 5 + 70.459 0 0 6.0712 6.0712 92.851 0 0 0 30.49832993881884 40.30394370788876 30.49832993881884 38.78673551690787 0 1.5074908058443608 1.6989700043360187 0.3807196863200844 0.6505149978319906 [YN]{I|L}HE{I|L}ME{I|L};[YN]{I|L}[TA][KG]M[YT];{[{M(Oxidation (M))|F}C]|[YS]}Y{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[{M(Oxidation (M))|F}C]|[YS]}Y{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]}{I|L};{[QN]|[E{I|L}]|[KN]}{[{M(Oxidation (M))|F}H]|[RQ]}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}[YV]{[YC]|[HE]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}[YV][HQ]ME{I|L};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}[HV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}[WE]{I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};{[QN]|[E{I|L}]|[KN]}{[NV]|[RG]}[WQ]ME{I|L} 6.0712;2.7291;2.5596;2.1287;0.85508;0.66771;0.62534;0.35225;0.14283;0.10046 -;-;-;-;-;-;-;-;-;- 356 NaN NaN 125869.5 NaN 20621 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25402 100.04 NaN 235310 35 0 17981 0.261 + 6438 FPIDLLDTL 9 61 523.7919544022196 1045.5693558712392 2 523.7918090820312 MULTI HCD FTMS 0 0 0 25396 41541.859375 0.14105885543791039 -18 0.2890777587890625 6 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 71.13359017698441 0.008721403657255008 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}DT{I|L} 9 0 + 57.681 0 0 5.5167 5.5167 91.744 0 0 0 13.02809901047091 32.61439372640169 13.02809901047091 35.35158431283705 0 1.579689690656103 1.3010299956639813 0 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}P{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}{M(Oxidation (M))|F}P;{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L} 5.5167;2.1356;2.0173;1.8026 +;-;-;- + 176 NaN NaN 126650.7 NaN 20622 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25403 100.04 NaN 76807 35 0 6065.1 0.261 + 33879 YLLWLGCYIV 10 40 621.8334835518991 NaN 0 621.833251953125 PEAK HCD FTMS 0 0 0 25396 16221.0947265625 0.32158209848917757 1 -0.03610992431640625 7 Unmodified _YLLWLGCYIV_ REV__ENST00000440625.5_1_7:112092117-112092201:+|nuORF 18.13498045792455 0.2957424211807362 2 Y 1 -1 13.852 0 0 1.1156 0 0 230.16255385566564 845.4037013622575 1075.566255217923 0 0 0 0 0 0.9247425010840047 0 0 0 Y 1.1156 + + 14 NaN NaN 110456.6 NaN 20623 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25404 100.05 NaN 26484 35 0 5875.6 0.261 -1 0 27 626.313179013962 625.3059025473619 1 626.3046875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93966.3 NaN 20624 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25405 100.05 NaN 114490 35 0 12940 0.261 + 13849 KYPSPFFVF 9 42 566.2976532089688 NaN 0 566.296875 PEAK HCD FTMS 0 0 0 25396 19496.22265625 0.23541600199387686 11 -0.21819305419921875 9 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 9.38312468134398 0.24977752951804 2 V 1 8 10.485 0 0 0.92736 0 0 165.08037327297535 863.4073532190039 1028.4877264919792 0 0 0 0 0 0.5 0 0 0 + V 0.92736 + + 28 + NaN NaN 109593.8 NaN 20625 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25406 100.05 NaN 42974 35 0 9196.8 0.261 -1 AFILCQALCW 10 24 641.3116400032649 NaN 0 641.310546875 PEAK HCD FTMS 0 0 0 25396 6331.0849609375 0.2999893572077385 1 -0.03610992431640625 10 2 Carbamidomethyl (C) _AFILC(Carbamidomethyl (C))QALC(Carbamidomethyl (C))W_ ENST00000563969.5_1_16:67311562-67311856:+|nuORF 1.844237919475145 0.33860587697544825 2 {I|L} 1 -1 6.9897 0 0 0.54581 0 0 836.3351197508672 328.1665438287719 1164.5016635796392 0 0 0 0 0 0 0 0 0 {I|L} 0.54581 + + 2 + NaN NaN 106216.8 NaN 20626 4778 25396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25408 100.06 NaN 799470 35 0 202870 0.327 + 4648 EYNILVNFF 9 65 579.7950147695155 1157.575476605831 2 579.7951049804688 MULTI HCD FTMS 0 0 0 25407 272921.875 0.10554466290967064 -6 0.13600921630859375 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 155.02607137521346 3.513045939247001E-06 2 {I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 70.795 0 0 6.1158 0 0 406.1507462364935 0 406.1507462364935 0 53.8566032266867 0 0 0 2.6549471895720984 0 0 0.9604093769761876 + {I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.1158 + + 401 + NaN NaN 225238.6 NaN 20627 4779 25407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25409 100.06 NaN 52709 35 0 9614.1 0.261 + -1 CFLFIIKVIT 10 31 627.3676014607588 NaN 0 627.8153076171875 PEAK HCD FTMS 0 0 0 25407 5688.60595703125 0.27241241450302867 2 -0.04229736328125 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FLFIIKVIT_ REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF 3.5964929083625545 0.337106189561315 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117622.3 NaN 20628 4779 25407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25411 100.07 NaN 1597600 35 0 196440 0.327 + 27013 SYLQSLLLF 9 56 542.3078345791419 1082.6011162250836 2 542.30810546875 MULTI HCD FTMS 0 0 0 25410 694896.1875 0.4993853319037041 -5 0.1011505126953125 1 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 114.20165948288297 0.0022564706844261533 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 97.432 0 0 8.9998 8.9998 94.718 0 0 0 4.762036441594191 50.189549981487076 4.762036441594191 11.708187539523749 0 3.1549471895720984 0 1.6549471895720984 0.25 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{M(Oxidation (M))|F}{I|L} 8.9998;7.9183;7.8675;6.786 +;-;-;- + 441 NaN NaN 344182 NaN 20629 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25412 100.07 NaN 289820 35 0 28419 0.261 + 35544 YYGPLNLLTF 10 47 600.818946657316 1199.623340381432 2 600.81884765625 MULTI HCD FTMS 0 0 0 25410 139798.203125 0.02438663733342125 27 -0.47747802734375 2 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 114.6490535036381 4.5448240269034285E-05 2 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 47.735 0 0 3.9792 0 0 707.3272442713749 0 707.3272442713749 0 18.86623162815269 0 0 0 1.5 0 0.3807196863200844 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.9792 + + 66 NaN NaN 134973.9 NaN 20630 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25413 100.07 NaN 350670 35 0 31164 0.261 + 18572 MVNRYWEL 8 49 555.7753275584349 1109.5361021836698 2 556.27734375 MULTI HCD FTMS 0 0 0 25410 104746.5625 0.3340293503045477 3 -0.06499481201171875 3 Unmodified _MVNRYWEL_ REV__ENSG00000182601|ENST00000331351|HS3ST4;REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant 28.486842064014134 0.3788298654084067 2 E{I|L}{I|L}E{I|L} 5 -1 40.943 0 0 3.6901 0 0 494.18135268379064 0 494.18135268379064 0 7.979917914819055 0 0 0 1.25 0 0 0 E{I|L}{I|L}E{I|L} 3.6901 - 133 NaN NaN 148486.5 NaN 20631 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25414 100.08 NaN 221370 35 0 34846 0.263 + 31204 VVLLPGSY 8 44 424.2499450842295 846.4853372352591 2 424.24957275390625 MULTI HCD FTMS 0 0 0 25410 61332.5390625 0.012053761335677558 22 -0.4100494384765625 4 Unmodified _VVLLPGSY_ REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF 5.760428011301431 0.5334459684533844 2 T 1 -1 12.346 0 0 1.4585 0 0 578.3770436334997 164.03867517642814 742.4157188099279 0 0 0 0 0 0.4247425010840047 0 0.3494850021680094 0 T 1.4585 - 12 + NaN NaN 142563.6 NaN 20632 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25415 100.08 NaN 232820 35 0 35847 0.261 + 32704 WPLPPDWPL 9 57 560.7949230768537 1119.5752932205073 2 560.7951049804688 MULTI HCD FTMS 0 0 0 25410 50562.4375 0.3124347142430531 11 -0.2016143798828125 5 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 21.74664581756881 0.17247014374749275 2 WP{I|L} 3 6 32.747 0 0 2.925 0 0 705.3470936505875 0 705.3470936505875 0 27.26280941356464 0 0 0 0.805462187404089 0 0 0 + WP{I|L} 2.925 + + 127 NaN NaN 145773.1 NaN 20633 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25416 100.08 NaN 150210 35 0 23547 0.261 + 31980 VYPLAAAFAVL 11 62 567.8316542680915 1133.6487556029829 2 567.8314208984375 MULTI HCD FTMS 0 0 0 25410 47790.59375 0.5040226591175824 -5 0.1011505126953125 6 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 63.562846038646086 0.025723774771338973 2 {M(Oxidation (M))|F}AANQAV{I|L} 8 6 57.319 0 0 5.0561 0 0 301.2000904767594 0 301.2000904767594 0 37.02806936279728 0 0 0 1.75 0 0 0 {M(Oxidation (M))|F}AANQAV{I|L} 5.0561 - 309 NaN NaN 125235.1 NaN 20634 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25417 100.09 NaN 83543 35 0 8014.4 0.261 -1 0 38 531.3336112937063 530.3263348271063 1 531.3342895507812 MULTI HCD FTMS 0 0 0 25410 30825.916015625 0.323782720317681 3 -0.06499481201171875 7 NaN NaN 2 {I|L}{I|L}{I|L} 3 -1 8.9524 0 0 1.6881 0 0 173.06387437031083 0 173.06387437031083 0 1.962724883926656 0 0 0 0 0 0 0 {I|L}{I|L}{I|L} 1.6881 - 12 + NaN NaN 101629.2 NaN 20635 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25418 100.09 NaN 125520 35 0 15176 0.261 + 34819 YRHSWREF 8 46 590.7862838523756 1179.5580147715511 2 590.7857666015625 MULTI HCD FTMS 0 0 0 25410 29145.390625 0.09524870911868755 -11 0.20003509521484375 8 Unmodified _YRHSWREF_ REV__ENSG00000129292|ENST00000395386|PHF20L1;REV__ENST00000361997.9_1_8:133790074-133829825:+|nuORF;REV__ENST00000395383.5_1_8:133790074-133836319:+|nuORF;REV__nc|ENSG00000129292|A8MW92-2|PHF20L1;REV__nc|ENSG00000129292|A8MW92-4|PHF20L1 7.910154910731844 0.5302565402355366 2 {I|L}{I|L}V[WD]{M(Oxidation (M))|F} 6 -1 25.635 0 0 2.1733 0 0 388.13740737129064 0 388.13740737129064 0 0.8094074150855768 0 0 0 0 0 0.5 0 {I|L}{I|L}V[WD]{M(Oxidation (M))|F} 2.1733 - 29 NaN NaN 117354.6 NaN 20636 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25419 100.09 NaN 124580 35 0 15512 0.263 -1 0 58 455.2369352764422 908.4593176196844 2 455.23614501953125 MULTI HCD FTMS 0 0 0 25410 37752.984375 0.011557159565047392 20 -0.39107513427734375 9 NaN NaN 2 T 1 -1 11.99 0 0 1.3198 0 0 189.04543832323105 615.3443864802105 804.3898248034416 0 0 0 0 0 0.5 0 0 0 T 1.3198 - 6 + NaN NaN 98834.2 NaN 20637 4780 25410 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25421 100.1 NaN 186660 35 0 40637 0.327 + -1 MIENLRHTIF 10 50 645.3370457217529 NaN 0 645.3175659179688 PEAK HCD FTMS 0 0 0 25420 13368.1943359375 0.4272507988657358 10 -0.16895294189453125 1 Oxidation (M) _M(Oxidation (M))IENLRHTIF_ REV__tr|U7SMC3|U7SMC3_FUSNUSimplesugartransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01899PE=4SV=1 6.2057823575117 0.3348729994311477 2 T{I|L}{I|L} 3 -1 11.427 0 0 0.88671 0 0 166.09918802378075 792.3366793268186 958.4358673505994 0 0 0 0 0 0 0 0 0 T{I|L}{I|L} 0.88671 - 44 + NaN NaN 116883.9 NaN 20638 4781 25420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25422 100.1 NaN 343370 35 0 28555 0.261 + 2525 DSQPKPDLEN 10 77 571.768879463897 1141.5232059945938 2 571.76904296875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DSQPKPDLEN_ ENSG00000174405|ENST00000442234|LIG4 13.614867670302875 0.3837631382804675 2 {M(Oxidation (M))|F}{I|L}KMEN 6 7 34.887 0 0 3.0562 0 0 361.20027358222814 0 361.20027358222814 0 10.979888977487548 0 0 0 0.28872548999643577 0 0 0.3494850021680094 {M(Oxidation (M))|F}{I|L}KMEN 3.0562 - 420 NaN NaN 175306.9 NaN 20639 4781 25420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25424 100.11 NaN 277310 35 0 64867 0.327 + 25278 SAVVEDLLYVL 11 54 610.8422793929841 1219.670005852768 2 610.842529296875 MULTI HCD FTMS 0 0 0 25423 118365.1875 0.23515917367851535 5 -0.1010589599609375 1 Unmodified _SAVVEDLLYVL_ ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 44.94466952835103 0.1051048332168363 2 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VE{NN|[MP]|[D{I|L}]|[EV]}{I|L}YV{I|L} 10 2 + 56.86 0 0 4.6619 4.6619 91.199 0 0 0 5.401442972186459 43.51489551195742 5.401442972186459 56.85972531752853 0 2.6237125054200234 0 0.4247425010840047 0 {[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}VE{NN|[MP]|[D{I|L}]|[EV]}{I|L}YV{I|L} 4.6619 - 77 NaN NaN 153297.1 NaN 20640 4782 25423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25425 100.11 NaN 246140 35 0 34258 0.261 + 11012 IYEPNFIFF 9 48 595.3001988742941 1188.585844815388 2 595.2998046875 MULTI HCD FTMS 0 0 0 25423 51482.86328125 0.32269036768880416 17 -0.3259429931640625 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 26.268140514670165 0.13340543277302316 2 [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 40.111 0 0 3.3747 3.3747 88.633 0 0 0 1.1831747353331679 27.663800089887545 1.1831747353331679 29.247425010840047 0 1.4247425010840047 0 0 0 + + [Y{I|L}]E[NP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};WW[YK]{[NV]|[RG]}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.3747;0.914 +;- + 56 NaN NaN 128562.4 NaN 20641 4782 25423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25426 100.12 NaN 184880 35 0 31515 0.261 + 27490 SYYGPLNLLTF 11 53 644.3346538327479 1286.6547547322957 2 644.8160400390625 MULTI HCD FTMS 0 0 0 25423 20765.740234375 0.003949226197845661 44 -0.7554244995117188 3 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 59.012897905743536 0.044407695078131824 2 N{I|L}{I|L}T{M(Oxidation (M))|F} 5 6 58.672 0 0 4.5601 0 0 680.3159657209 0 680.3159657209 0 44.19129307741976 0 0 0 1.805462187404089 0 0 0.805462187404089 + N{I|L}{I|L}T{M(Oxidation (M))|F} 4.5601 + + 318 NaN NaN 127674.4 NaN 20642 4782 25423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25427 100.12 NaN 192690 35 0 17806 0.263 + 20815 PHLRFPVF 8 33 506.79187647802314 1011.5692000228463 2 507.29376220703125 MULTI HCD FTMS 0 0 0 25423 55283.6328125 0.6503752961419133 5 -0.1010589599609375 4 Unmodified _PHLRFPVF_ ENST00000409690.3_1_3:196438896-196439121:-|nuORF 2.8892196856762586 0.5377058178582064 2 {M(Oxidation (M))|F} 1 7 16.99 0 0 1.6795 0 0 846.4905084718682 0 846.4905084718682 0 16.989700043360187 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 1.6795 + + 6 + NaN NaN 129918.1 NaN 20643 4782 25423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25428 100.12 NaN 92990 35 0 5811.9 0.261 + -1 KRRQLCVRKLM 11 53 510.634407723868 1528.881393771804 3 510.6341857910156 MULTI HCD FTMS 0 0 0 25423 32890.60546875 0.15251566220854548 19 -0.3583831787109375 5 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))KRRQLC(Carbamidomethyl (C))VRKLM_ REV__ENST00000283131.3_1_4:144456041-144456080:+|nuORF 0.08335046087909445 0.4185551196980541 2 M 1 -1 5.4846 0 0 0.35873 0 0 641.4263899649665 753.4010103815061 1394.8274003464726 0 0 0 0 0 0 0 0 0 M 0.35873 + + 1 + NaN NaN 105657.1 NaN 20644 4782 25423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25429 100.13 NaN 44333 35 0 5109.8 0.261 + 23993 RVVRDLLTHV 10 30 604.3665723327202 1206.7185917322404 2 604.366455078125 MULTI HCD FTMS 0 0 0 25423 36527.0390625 0.16007801450249406 13 -0.2375335693359375 6 Unmodified _RVVRDLLTHV_ REV__ENSG00000178896|ENST00000316052|EXOSC4 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110372.7 NaN 20645 4782 25423 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25431 100.13 NaN 339310 35 0 36053 0.327 + -1 RGCFCILIE 9 49 555.7753275584349 1109.5361021836698 2 556.2781982421875 MULTI HCD FTMS 0 0 0 25430 121952.71875 0.3888985608662407 6 -0.107452392578125 1 Carbamidomethyl (C) _RGC(Carbamidomethyl (C))FCILIE_ REV__ENST00000565940.6_3_16:47483948-47484179:-|nuORF 32.30548876998284 0.10066689432505688 2 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 -1 47.083 0 0 4.2435 0 0 131.10122673783013 0 131.10122673783013 0 28.452526344083463 0 0 0 0.7614393726401688 0 0 0.9247425010840047 EW[QA]W{I|L}{M(Oxidation (M))|F} 4.2435 - 176 + NaN NaN 144667.5 NaN 20646 4783 25430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25432 100.14 NaN 162830 35 0 61358 0.261 + -1 YLHGNDWFC 9 33 606.2507184546643 1210.4868839761284 2 606.2509765625 MULTI HCD FTMS 0 0 0 25430 44876.55859375 0.37346051224597815 -2 0.0323333740234375 2 Carbamidomethyl (C) _YLHGNDWFC(Carbamidomethyl (C))_ REV__ENSG00000100100|ENST00000215912|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-2|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-4|PIK3IP1 2.302733041254933 0.33356062215410776 2 [{M(Oxidation (M))|F}E]E 3 -1 7.4473 0 0 0.61523 0 0 0 802.3548678033811 802.3548678033811 0.45757490560674974 0 0 0 0 0 0 0 0 [{M(Oxidation (M))|F}E]E 0.61523 - 4 + NaN NaN 114478.7 NaN 20647 4783 25430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25433 100.14 NaN 79667 35 0 11957 0.262 + 5877 FPDFVWTL 8 33 512.7602234642819 1023.5058939953639 2 512.7601928710938 MULTI HCD FTMS 0 0 0 25430 15223.0068359375 0.2812831115359653 -2 0.0323333740234375 3 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 15.847184025352803 0.47719562709667024 2 WT{I|L} 3 5 31.427 0 0 3.0705 0 0 605.2841536930017 0 605.2841536930017 0 31.42667503568731 0 0 0 1 0 0 0 + WT{I|L} 3.0705 + + 6 NaN NaN 116966.4 NaN 20648 4783 25430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25434 100.14 NaN 76066 35 0 5825.1 0.261 + -1 STGCDCDEGM 10 39 545.6605952768489 NaN 0 545.66064453125 PEAK HCD FTMS 0 0 0 25430 5800.7451171875 0.21009378163805695 1 -0.01956939697265625 4 Carbamidomethyl (C),Oxidation (M) _STGCDC(Carbamidomethyl (C))DEGM(Oxidation (M))_ REV__ENSG00000042980|ENST00000265769|ADAM28;REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF;REV__nc|ENSG00000042980|Q9UKQ2-2|ADAM28 0.4007161486938917 0.3398413315442166 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.36531 0 0 664.0764873292852 275.14936243228755 939.2258497615728 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.36531 + + 5 + NaN NaN 112065.5 NaN 20649 4783 25430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25435 100.15 NaN 126290 35 0 8086.5 0.261 + 3253 EDYHLILQM 9 58 581.2847119622578 1160.5548709913155 2 582.303466796875 MULTI HCD FTMS 0 0 0 25430 15288.7333984375 0.5271070003781003 6 -0.107452392578125 5 Unmodified _EDYHLILQM_ REV__ENSG00000110057|ENST00000227471|UNC93B1;REV__ENST00000528096.1_1_11:67766987-67770655:-|nuORF;REV__ENST00000530138.3_1_11:67766987-67771573:-|nuORF;REV__UNC93B1|p.P119Lfs*68|1|0.38|ENSG00000110057|chr11:68003042-68003058|GAGCAGGGCGGCGATGG/-|frameshift_variant 9.38312468134398 0.279288223203164 2 [YN]{I|L} 3 -1 34.947 0 0 3.0113 0 0 0 767.3414547086995 767.3414547086995 3.0090746888058106 0 0 0 0 0.75 2 0 0 [YN]{I|L} 3.0113 - 63 NaN NaN 128074.9 NaN 20650 4783 25430 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25437 100.15 NaN 1465400 35 0 603910 0.327 + 26536 SVLILASY 8 49 433.25468628645314 864.4948196397063 2 433.25482177734375 MULTI HCD FTMS 0 0 0 25436 521476.65625 0.005392574854667997 26 -0.44483184814453125 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 T 1 8 16.594 0 0 1.9195 0 0 596.3859941600675 164.03853784732658 760.4245320073941 0 0 0 0 0 0.805462187404089 0 0.3054621874040891 0 T 1.9195 - 12 + NaN NaN 323644.3 NaN 20651 4784 25436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25438 100.16 NaN 109160 35 0 9079.2 0.261 + 17563 LYVLQVLTF 9 50 548.3263209168332 1094.6380889004663 2 548.3263549804688 MULTI HCD FTMS 0 0 0 25436 22252.703125 0.012774119577210783 22 -0.37664031982421875 2 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 36.506200033944 0.08138327636155518 2 QV{I|L}T{M(Oxidation (M))|F} 5 4 55.943 0 0 5.1107 0 0 488.2990895001969 0 488.2990895001969 0 48.953650195120844 0 0 0 2.25 0 0 0 + QV{I|L}T{M(Oxidation (M))|F} 5.1107 + + 64 NaN NaN 110193.1 NaN 20652 4784 25436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25439 100.16 NaN 65981 35 0 10533 0.261 + 13624 KYPENFFLL 9 29 585.8131604594978 1169.6117679857955 2 585.8134155273438 MULTI HCD FTMS 0 0 0 25436 42838.59765625 0.6270209105292263 -3 0.05190277099609375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 33.06 0 0 2.8266 0 0 778.3644886701187 0 778.3644886701187 0 33.05970632012567 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.8266 + + 16 NaN NaN 95975.4 NaN 20653 4784 25436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25440 100.16 NaN 154160 35 0 22372 0.261 -1 0 50 512.809273823024 1023.603994712848 2 512.8088989257812 MULTI HCD FTMS 0 0 0 25436 24948.95703125 0.0525742523825021 19 -0.334869384765625 4 NaN NaN 2 Q 1 -1 10.485 0 0 1.0243 0 0 401.29239524545216 491.2235506647094 892.5159459101616 0 0 0 0 0 0 0 0 0.5 Q 1.0243 - 28 + NaN NaN 130854.7 NaN 20654 4784 25436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25442 100.17 NaN 383900 35 0 36366 0.327 + 6439 FPIDLLDTL 9 58 523.7919544022196 1045.5693558712392 2 523.7918090820312 MULTI HCD FTMS 0 0 0 25441 255068.90625 0.8661077889806097 -11 0.2171630859375 1 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 88.90359156742426 0.00455469703666567 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L} 9 0 + 73.438 0 0 7.0238 7.0238 94.529 0 0 0 18.881580146315784 28.66684914597785 18.881580146315784 39.2790323204948 0 1.6989700043360187 1.5228787452803376 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{NN|[MP]|[D{I|L}]|[EV]}{I|L}P{M(Oxidation (M))|F} 7.0238;3.2671;2.9359 +;-;- + 246 NaN NaN 151602.4 NaN 20655 4785 25441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25443 100.17 NaN 156640 35 0 20381 0.261 + 34945 YSLVTQQPLG 10 39 553.2983911363857 1104.5822293395713 2 553.298828125 MULTI HCD FTMS 0 0 0 25441 170401.953125 0.9862318347132879 8 -0.1398162841796875 2 Unmodified _YSLVTQQPLG_ tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1 14.405379775768559 0.37636895476610294 2 {I|L}{I|L}SQ[TP]{M(Oxidation (M))|F} 7 7 43.614 0 0 3.9484 0 0 300.1458912580094 0 300.1458912580094 0 32.816978991741976 0 0 0 1.8252574989159953 0 0 0 {I|L}{I|L}SQ[TP]{M(Oxidation (M))|F} 3.9484 - 144 NaN NaN 116249.6 NaN 20656 4785 25441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25444 100.18 NaN 148240 35 0 21842 0.261 + 31311 VWNFPIDVTF 10 49 619.316458326321 1236.618363719442 2 619.3162231445312 MULTI HCD FTMS 0 0 0 25441 104150.9765625 0.30765292869401595 8 -0.1398162841796875 3 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 33.4449034751529 0.20229115034201947 2 DVT{M(Oxidation (M))|F} 4 6 43.175 0 0 3.4914 0 0 756.3974823870367 0 756.3974823870367 0 22.206225184280797 0 0 0 1.4247425010840047 0 0 0 + DVT{M(Oxidation (M))|F} 3.4914 + + 35 NaN NaN 113759.6 NaN 20657 4785 25441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25445 100.18 NaN 84734 35 0 8949.9 0.262 + 22044 QGFVIELLL 9 36 516.3101270680921 1030.6057012029842 2 516.3096923828125 MULTI HCD FTMS 0 0 0 25441 56667.1484375 0.9671402235621622 -6 0.11052703857421875 4 Unmodified _QGFVIELLL_ ENSG00000075539|ENST00000358350|FRYL 22.736283301280096 0.1639198954644489 2 E{I|L}{I|L}{I|L} 4 5 45.433 0 0 4.4084 0 0 544.3004276366504 0 544.3004276366504 0 45.43305028184122 0 0 0 1.3494850021680094 0 0 0 + E{I|L}{I|L}{I|L} 4.4084 + + 23 NaN NaN 120428.6 NaN 20658 4785 25441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25446 100.18 NaN 38597 35 0 4637 0.261 + -1 IVMIIVMRTV 10 28 603.8512346862508 1205.6879164393015 2 603.8527221679688 MULTI HCD FTMS 0 0 0 25441 67882.59375 1 0 0 5 2 Oxidation (M) _IVM(Oxidation (M))IIVM(Oxidation (M))RTV_ REV__ENSG00000163914|ENST00000296271|RHO 2.9952420565917617 0.4594494122822477 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108682.7 NaN 20659 4785 25441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25447 100.19 NaN 39640 35 0 6417.2 0.261 + 20395 NYVKANYLPY 10 28 622.81787109375 NaN 0 622.81787109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 5.731851221503515 0.33527861879838866 2 {I|L} 1 9 16.237 0 0 1.3067 0 0 852.4259189435562 274.0823153131469 1126.5082342567032 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.3067 + + 4 + NaN NaN 97733.7 NaN 20660 4785 25441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25449 100.19 NaN 2623300 35 0 710530 0.327 + 4649 EYNILVNFF 9 76 579.7950147695155 1157.575476605831 2 579.7955322265625 MULTI HCD FTMS 0 0 0 25448 715977.375 0.27688359789894396 1 -0.01956939697265625 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 176.83740622441886 1.0594397382223596E-10 2 [YE]N{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 107.05 0 0 9.2477 9.2477 93.602 0 0 0 25.29090842403555 89.0018312907727 25.29090842403555 9.208187539523749 0 2.774227503252014 0 2.115356566548286 1.6549471895720984 + + [YE]N{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]N{I|L}{I|L}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}{I|L}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}[YK]{I|L}[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}V{I|L}{[CA]|SS}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{I|L}{M(Oxidation (M))|F}{[CA]|SS}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F}{I|L}{[CA]|SS}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{I|L}S{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YV]{M(Oxidation (M))|F} 9.2477;8.4522;7.7564;6.2309;2.5783;1.6296;1.3559;1.2617;1.248;1.146 +;-;-;-;-;-;-;-;-;- + 564 NaN NaN 499079.1 NaN 20661 4786 25448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25450 100.2 NaN 587690 35 0 189690 0.261 + 15711 LPESLTSLLVL 11 58 592.8604696760095 1183.706386418819 2 592.8605346679688 MULTI HCD FTMS 0 0 0 25448 153445.9375 0.35185773174881374 1 -0.01956939697265625 2 Unmodified _LPESLTSLLVL_ ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF 78.7280429016045 0.006868779721450025 2 TS{I|L}{I|L}V{I|L} 6 5 69.518 0 0 5.8729 0 0 539.2950132968573 0 539.2950132968573 0 64.91409899492764 0 0 0 2.06295299324845 0 0.7742275032520141 0 + TS{I|L}{I|L}V{I|L} 5.8729 + + 126 NaN NaN 191150 NaN 20662 4786 25448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25451 100.2 NaN 363320 35 0 99385 0.261 + 17013 LYITLPLAL 9 40 508.8231017312046 1015.6316505292092 2 508.82318115234375 MULTI HCD FTMS 0 0 0 25448 72628.609375 0.06581996212311732 -10 0.20201873779296875 3 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 63.562846038646086 0.012597299157545023 2 [Y{I|L}]{I|L}T{I|L}{I|L}PA{I|L} 9 2 + 67.598 0 0 6.6557 6.6557 94.669 0 0 0 7.147642715192504 60.607887415777526 7.147642715192504 67.59758745913771 0 1.774227503252014 0 1.274227503252014 0 [Y{I|L}]{I|L}T{I|L}{I|L}PA{I|L} 6.6557 - 53 NaN NaN 158242.5 NaN 20663 4786 25448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25452 100.2 NaN 84241 35 0 5481.4 0.261 + 8063 GHVPYGFP 8 42 437.2145822419818 NaN 0 437.21466064453125 PEAK HCD FTMS 0 0 0 25448 42715.140625 0.7717244933771538 -28 0.47481536865234375 4 Unmodified _GHVPYGFP_ REV__ENSG00000167080|ENST00000393354|B4GALNT2;REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;REV__nc|ENSG00000167080|Q8NHY0|B4GALNT2 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108547 NaN 20664 4786 25448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25453 100.21 NaN 55629 35 0 3811.4 0.261 + 17156 LYLPSFFTY 9 46 575.7945471212664 NaN 0 575.7933349609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 15.847184025352803 0.21527282152051216 2 {I|L} 1 8 10.485 0 0 0.91204 0 0 760.344085842339 273.12473474674067 1033.4688205890798 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.91204 + + 7 + NaN NaN 103835.7 NaN 20665 4786 25448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25455 100.21 NaN 679090 35 0 82078 0.327 + 27014 SYLQSLLLF 9 56 542.3078345791419 1082.6011162250836 2 542.3080444335938 MULTI HCD FTMS 0 0 0 25454 441012.125 0.3169322128662317 2 -0.02910614013671875 1 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 93.16586880292088 0.00444300900000894 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 94.932 0 0 8.7689 8.7689 94.609 0 0 0 4.762036441594191 68.27623146104628 4.762036441594191 12.25772496747986 0 3.1549471895720984 0 1.274227503252014 0.3807196863200844 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QS{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}[AG]S{I|L}{I|L}{M(Oxidation (M))|F}{I|L};{[{M(Oxidation (M))|F}C]|[YS]}{I|L}QVV[YV]{I|L} 8.7689;7.6366;7.5666;6.4344;1.9983 +;-;-;-;- + 255 NaN NaN 194288.7 NaN 20666 4787 25454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25456 100.21 NaN 305900 35 0 78552 0.262 + 31110 VTLGVLYS 8 44 426.2469649884269 850.4793770436538 2 426.2471008300781 MULTI HCD FTMS 0 0 0 25454 113662.265625 0.8391858274852614 -1 0.01956939697265625 2 Unmodified _VTLGVLYS_ ENSG00000214511|ENST00000695931|HIGD1C 2.302733041254933 0.5385759549224092 2 A 1 8 2.7642 0 0 0.32502 0 0 425.6972247993163 350.7263582818969 776.4235830812132 0 0 0 0 0 0 0 0 0 A 0.32502 - 8 + NaN NaN 149627.1 NaN 20667 4787 25454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25457 100.22 NaN 135470 35 0 10762 0.261 + 35545 YYGPLNLLTF 10 43 600.818946657316 1199.623340381432 2 600.819091796875 MULTI HCD FTMS 0 0 0 25454 76656.5703125 0.013372103057457261 34 -0.5883255004882812 3 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 47.748688679222035 0.08597705450879027 2 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 43.928 0 0 3.6618 0 0 707.3284083632805 0 707.3284083632805 0 43.92790030352131 0 0 0 1.5 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.6618 + + 15 NaN NaN 132951.7 NaN 20668 4787 25454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25458 100.22 NaN 148450 35 0 28904 0.261 + 32705 WPLPPDWPL 9 35 560.7949230768537 1119.5752932205073 2 560.7952880859375 MULTI HCD FTMS 0 0 0 25454 23891.4921875 0.14762997797409783 18 -0.30181121826171875 4 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 15.847184025352803 0.2234401846867398 2 WP{I|L} 3 6 28.812 0 0 2.5735 0 0 705.350877830275 0 705.350877830275 0 23.327731244245342 0 0 0 0.5 0 0 0 + WP{I|L} 2.5735 + + 23 NaN NaN 109133 NaN 20669 4787 25454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25460 100.23 NaN 296150 35 0 85285 0.327 + 11013 IYEPNFIFF 9 46 595.3001988742941 1188.585844815388 2 595.2996215820312 MULTI HCD FTMS 0 0 0 25459 47223.69140625 0.2959942274433544 23 -0.38282012939453125 1 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 22.736283301280096 0.1639198954644489 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 33.5 0 0 2.8185 0 0 763.355907399047 0 763.355907399047 0 28.015384402724592 0 0 0 0.7302046884880937 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8185 + + 24 NaN NaN 138898.2 NaN 20670 4788 25459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25461 100.23 NaN 195490 35 0 34985 0.261 + 31981 VYPLAAAFAVL 11 49 567.8316542680915 1133.6487556029829 2 567.8317260742188 MULTI HCD FTMS 0 0 0 25459 73628.6171875 0.7765229203078122 3 -0.04204559326171875 2 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 53.57557251787612 0.0667355439374129 2 [YV][{I|L}P]AAA{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L} 11 0 + 40.054 0 0 3.5332 3.5332 89.388 0 0 0 0.8405449605855253 12.89909154511232 0.8405449605855253 40.053816946194054 0 1.7614393726401687 0 0 0 + + [YV][{I|L}P]AAA{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L} 3.5332 + + 124 NaN NaN 114722.7 NaN 20671 4788 25459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25462 100.23 NaN 182030 35 0 21592 0.261 -1 0 55 531.3336112937063 530.3263348271063 1 531.3338623046875 MULTI HCD FTMS 0 0 0 25459 44291.37109375 0.4652183121521917 11 -0.20865631103515625 3 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 15.573 0 0 2.9365 0 0 252.1635978659719 0 252.1635978659719 0 6.620768972555593 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 2.9365 - 17 + NaN NaN 113645 NaN 20672 4788 25459 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25464 100.24 NaN 111810 35 0 18693 0.327 + 25656 SHLPGEEH 8 40 453.20950337943293 NaN 0 453.2098388671875 PEAK HCD FTMS 0 0 0 25463 31594.701171875 0.5709206361620607 -148 2.437042236328125 1 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104039.7 NaN 20673 4789 25463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25465 100.24 NaN 85887 35 0 12112 0.261 + 17564 LYVLQVLTF 9 33 548.3263209168332 1094.6380889004663 2 548.324951171875 MULTI HCD FTMS 0 0 0 25463 13401.7041015625 0.007693221347990979 27 -0.4545745849609375 2 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 26.268140514670165 0.13340543277302316 2 QV{I|L}T{M(Oxidation (M))|F} 5 4 52.563 0 0 4.8019 0 0 488.30765784753504 0 488.30765784753504 0 52.562893943202624 0 0 0 2 0 0 0 + QV{I|L}T{M(Oxidation (M))|F} 4.8019 + + 32 + NaN NaN 103369.5 NaN 20674 4789 25463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25466 100.25 NaN 32482 35 0 4751.7 0.261 + 7368 FVFANSAPL 9 25 483.257019644315 NaN 0 483.25677490234375 PEAK HCD FTMS 0 0 0 25463 17268.5703125 0.6666712410811171 -7 0.13016510009765625 3 Unmodified _FVFANSAPL_ REV__ENSG00000135437|ENST00000257895|RDH5;REV__ENST00000550608.1_1_12:56114968-56115732:+|nuORF 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116637.8 NaN 20675 4789 25463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25467 100.25 NaN 40398 35 0 4703 0.261 + 34828 YRIWFNFC 8 31 574.768798828125 NaN 0 574.768798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YRIWFNFC_ nc|ENSG00000183765|O96017-6|CHEK2 2.302733041254933 0.38822285293237185 2 W 1 7 3.9794 0 0 0.34678 0 0 529.1938977521501 429.2245272272094 958.4184249793595 0 0 0 0 0 0 0 0 0 + W 0.34678 + + 1 + NaN NaN 107617.8 NaN 20676 4789 25463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25469 100.26 NaN 169490 35 0 28961 0.327 + 32906 YADGIFDLF 9 48 530.7528689273886 1059.491184921577 2 530.7527465820312 MULTI HCD FTMS 0 0 0 25468 55846.5703125 0.0919897615984635 -6 0.10408782958984375 1 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 37.97399986684836 0.07464525285885698 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 5 44.725 0 0 4.2213 0 0 519.2332811326445 0 519.2332811326445 0 35.7723722827955 0 0 0 1.5 0 0.3807196863200844 0 + {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4.2213 + + 53 + NaN NaN 120109.8 NaN 20677 4790 25468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25470 100.26 NaN 140990 35 0 21236 0.261 + 27491 SYYGPLNLLTF 11 54 644.3346538327479 1286.6547547322957 2 644.8159790039062 MULTI HCD FTMS 0 0 0 25468 25292.330078125 0.0048100925573432785 52 -0.8433303833007812 2 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 37.771325159832564 0.15130342846161757 2 N{I|L}{I|L}T{M(Oxidation (M))|F} 5 6 44.737 0 0 3.477 0 0 680.315721580275 0 680.315721580275 0 31.53720958383822 0 0 0 0.8807196863200843 0 0 0.4247425010840047 + N{I|L}{I|L}T{M(Oxidation (M))|F} 3.477 + + 142 NaN NaN 115283.6 NaN 20678 4790 25468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25471 100.26 NaN 120030 35 0 43893 0.264 -1 0 33 452.23571100432974 451.22843453772975 1 452.2272644042969 MULTI HCD FTMS 0 0 0 25468 4439.36865234375 0.030750035228603333 16 -0.272552490234375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118245.8 NaN 20679 4790 25468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25473 100.27 NaN 249890 35 0 84621 0.327 + -1 DCLNCRPYN 9 39 606.2507184546643 1210.4868839761284 2 606.2510986328125 MULTI HCD FTMS 0 0 0 25472 110045.40625 0.9157924554884533 6 -0.11739349365234375 1 2 Carbamidomethyl (C) _DC(Carbamidomethyl (C))LNC(Carbamidomethyl (C))RPYN_ REV__ENSG00000196569|ENST00000421865|LAMA2 3.944395688203298 0.32111559684428237 2 N[YN] 3 -1 8.9524 0 0 0.73957 0 0 801.3183460919937 0 801.3183460919937 0 -2.016675202793719 -2.016675202793719 0 0 0 0 0 0 N[YN] 0.73957 - 8 NaN NaN 120349.1 NaN 20680 4791 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25474 100.27 NaN 105490 35 0 7916.8 0.262 + 5878 FPDFVWTL 8 39 512.7602234642819 1023.5058939953639 2 512.7608642578125 MULTI HCD FTMS 0 0 0 25472 53872.5390625 0.9954298501705704 6 -0.11739349365234375 2 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 15.847184025352803 0.47719562709667024 2 WT{I|L} 3 5 33.188 0 0 3.2425 0 0 605.2846065011943 0 605.2846065011943 0 30.96910013008056 0 0 0 1 0 0 0 + WT{I|L} 3.2425 + + 22 NaN NaN 127138.7 NaN 20681 4791 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25475 100.28 NaN 122940 35 0 17135 0.261 + 18573 MVNRYWEL 8 40 555.7753275584349 1109.5361021836698 2 556.2784423828125 MULTI HCD FTMS 0 0 0 25472 84704.3515625 0.2701161627178923 14 -0.24353790283203125 3 Unmodified _MVNRYWEL_ REV__ENSG00000182601|ENST00000331351|HS3ST4;REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant 16.942295170755138 0.46913822049235215 2 EW[QA]W{I|L}{M(Oxidation (M))|F} 7 -1 38.448 0 0 3.4652 0 0 131.09931716217005 0 131.09931716217005 0 26.14085105773654 0 0 0 0.4247425010840047 0 0 1 EW[QA]W{I|L}{M(Oxidation (M))|F} 3.4652 - 56 + NaN NaN 117379.4 NaN 20682 4791 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25476 100.28 NaN 123610 35 0 10694 0.261 + 33692 YKRRDTFF 8 41 566.7990518546684 1131.5835507761367 2 566.7991333007812 MULTI HCD FTMS 0 0 0 25472 7158.89111328125 0.20345046865154554 1 -0.01953887939453125 4 Unmodified _YKRRDTFF_ REV__ENST00000466112.5_1_3:52561592-52561760:-|nuORF 4.75600775471527 0.5349361699807423 2 SW 2 -1 20.969 0 0 1.8531 0 0 840.4628365200805 0 840.4628365200805 0 0 0 0 0 0 0 0 0 SW 1.8531 - 30 + NaN NaN 112112.2 NaN 20683 4791 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25477 100.28 NaN 54485 35 0 6062.2 0.261 -1 LCLHCLLMV 9 30 579.7950147695155 1157.575476605831 2 582.1032104492188 MULTI HCD FTMS 0 0 0 25472 13759.330078125 0.446411979250596 6 -0.11739349365234375 5 2 Carbamidomethyl (C) _LC(Carbamidomethyl (C))LHC(Carbamidomethyl (C))LLMV_ ENST00000521351.1_1_5:150827415-150844640:+|nuORF 2.302733041254933 0.33356062215410776 2 V 1 -1 5.4846 0 0 0.4738 0 0 424.187001119306 631.2979220025999 1055.484923121906 0 0 0 0 0 0 0 0 0 V 0.4738 + + 9 + NaN NaN 113484.5 NaN 20684 4791 25472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25479 100.29 NaN 970340 35 0 360060 0.327 + 26537 SVLILASY 8 48 433.25468628645314 864.4948196397063 2 433.2547912597656 MULTI HCD FTMS 0 0 0 25478 381677.59375 0.003946916836982455 34 -0.5765533447265625 1 Unmodified _SVLILASY_ nc|ENSG00000176510|Q8NH08|OR10AC1 9.347437153973935 0.5250182646323369 2 KT{[QG]|[NA]} 4 7 11.972 0 0 1.3849 0 0 432.27095229316564 0 432.27095229316564 0 0.9861986914063259 0 0 0 0 0 0 0 KT{[QG]|[NA]} 1.3849 - 9 NaN NaN 236499.1 NaN 20685 4792 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25480 100.29 NaN 86923 35 0 12595 0.261 + -1 LPLFCVVFVL 10 36 603.8512346862508 1205.6879164393015 2 603.8511352539062 MULTI HCD FTMS 0 0 0 25478 18115.67578125 0.26686776065108736 7 -0.14707183837890625 2 Carbamidomethyl (C) _LPLFC(Carbamidomethyl (C))VVFVL_ REV__ENSG00000178623|ENST00000407714|GPR35;REV__nc|ENSG00000178623|Q9HC97-2|GPR35 18.13498045792455 0.3414835283589826 2 {I|L}PE 3 -1 27.435 0 0 2.2755 0 0 0 863.4850577446192 863.4850577446192 16.63811573052314 0 0 0 0 0 0 0.4247425010840047 0 {I|L}PE 2.2755 - 14 + NaN NaN 114140.1 NaN 20686 4792 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25481 100.3 NaN 313370 35 0 80208 0.261 -1 0 39 637.3860516525203 636.3787751859203 1 637.373046875 MULTI HCD FTMS 0 0 0 25478 15560.2119140625 0.37742612957398014 22 -0.3733673095703125 3 NaN NaN 2 {I|L}[{I|L}V] 3 -1 10.458 0 0 1.6433 0 0 293.1312909103328 0 293.1312909103328 0 10.45757490560675 0 0 0 0 0 0 0 {I|L}[{I|L}V] 1.6433 - 5 + NaN NaN 158224.8 NaN 20687 4792 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25482 100.3 NaN 89272 35 0 17751 0.261 + 22242 QNSPVVEVWD 10 33 586.7843173882128 1171.5540818432255 2 586.7852172851562 MULTI HCD FTMS 0 0 0 25478 22351.6015625 0.37902306412917286 7 -0.14707183837890625 4 Unmodified _QNSPVVEVWD_ ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40692272-40758932:+|nuORF 4.897010918128616 0.4493830473644964 2 {I|L}N 2 9 20.969 0 0 1.7899 0 0 926.4343730895532 0 926.4343730895532 0 3.979400086720375 0 0 0 0 0 0 0 {I|L}N 1.7899 - 11 NaN NaN 110148.9 NaN 20688 4792 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25483 100.3 NaN 73257 35 0 9147.8 0.261 + 27492 SYYGPLNLLTF 11 42 644.3346538327479 1286.6547547322957 2 644.3350219726562 MULTI HCD FTMS 0 0 0 25478 24361.142578125 0.0033482721544955832 55 -0.9093017578125 5 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 27.088373467376528 0.22106052561220446 2 N{I|L}{I|L}T{M(Oxidation (M))|F} 5 6 46.102 0 0 3.5831 0 0 680.3165760724625 0 680.3165760724625 0 39.11236583892361 0 0 0 1.3807196863200843 0 0 0.4247425010840047 + N{I|L}{I|L}T{M(Oxidation (M))|F} 3.5831 + + 71 NaN NaN 107246.8 NaN 20689 4792 25478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25485 100.31 NaN 487520 35 0 50269 0.327 + 6440 FPIDLLDTL 9 60 523.7919544022196 1045.5693558712392 2 523.7921752929688 MULTI HCD FTMS 0 0 0 25484 156504.5 0.5314241098742933 -3 0.05205535888671875 1 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 100.37149154755038 0.004254194004462789 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L} 9 0 + 72.15 0 0 6.9005 6.9005 94.124 0 0 0 16.610688275226053 25.2726570743409 16.610688275226053 35.796896906561024 0 1.774227503252014 1.3979400086720375 0.3807196863200844 0 + + {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}D{I|L}{I|L}DT{I|L};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}{I|L}D{I|L}P{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}{I|L}{I|L}[{M(Oxidation (M))|F}V][EP]{I|L};[{I|L}T]D{I|L}{I|L}D{I|L}P{M(Oxidation (M))|F};[{I|L}T]D{I|L}[{M(Oxidation (M))|F}V][EP]{I|L} 6.9005;3.4768;3.2793;3.0962;2.8987 +;-;-;-;- + 374 NaN NaN 176085.9 NaN 20690 4793 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25486 100.31 NaN 64188 35 0 4899.2 0.261 + 22045 QGFVIELLL 9 38 516.3101270680921 1030.6057012029842 2 516.3098754882812 MULTI HCD FTMS 0 0 0 25484 20098.51171875 0.34302200927540033 2 -0.0391082763671875 2 Unmodified _QGFVIELLL_ ENSG00000075539|ENST00000358350|FRYL 5.731851221503515 0.3075653528928475 2 {I|L}{I|L} 2 7 20.969 0 0 2.0346 0 0 786.4269886701187 0 786.4269886701187 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}{I|L} 2.0346 + + 2 NaN NaN 105206.3 NaN 20691 4793 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25487 100.32 NaN 70256 35 0 9140.3 0.261 + 13625 KYPENFFLL 9 27 585.8130197295411 1169.6114865258821 2 585.8132934570312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 19.361941925380144 0.1930734562688509 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3649769513687 0 778.3649769513687 0 31.197887582883936 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 7 NaN NaN 113301.9 NaN 20692 4793 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25488 100.32 NaN 55412 35 0 7576.9 0.261 + 31312 VWNFPIDVTF 10 28 619.316458326321 1236.618363719442 2 619.3165283203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VWNFPIDVTF_ ENSG00000108641|ENST00000261499|B9D1;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;ENST00000575403.5_2_17:19241035-19261261:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1 5.296884461304476 0.4472664531305844 2 S 1 10 2.4743 0 0 0.20008 0 0 584.3012993657295 562.2731417291624 1146.5744410948919 0 0 0 0 0 0 0 0 0 S 0.20008 - 1 + NaN NaN 110963.6 NaN 20693 4793 25484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25490 100.32 NaN 2194500 35 0 596960 0.327 + 4650 EYNILVNFF 9 69 579.7950147695155 1157.575476605831 2 579.7953491210938 MULTI HCD FTMS 0 0 0 25489 708763.25 0.274093743141742 9 -0.1624755859375 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 163.03601447609117 7.615514112917802E-09 2 [YE]N{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 80.46 0 0 6.9508 6.9508 90.173 0 0 0 60.02726745349533 7.122417598921643 7.122417598921643 9.208187539523749 0 2.7134679910804405 0 0 1.0752574989159953 + + [YE]N{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]N{I|L}{I|L}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]GG{I|L}{I|L}VGG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ES]|[DT]|[{I|L}C]}[YK]{I|L}[QP]{M(Oxidation (M))|F}{M(Oxidation (M))|F};[YE]N{I|L}[VG]{[VA]|[{I|L}G]}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}V{I|L}{[CA]|SS}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{I|L}{M(Oxidation (M))|F}{[CA]|SS}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{M(Oxidation (M))|F}{I|L}{[CA]|SS}[TP]{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}V{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}[YV]{M(Oxidation (M))|F} 6.9508;6.1553;5.2264;4.4347;2.6909;2.1389;1.6343;1.2943;1.2548;0.99006 +;-;-;-;-;-;-;-;-;- + 428 + NaN NaN 431983.5 NaN 20694 4794 25489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25491 100.33 NaN 894820 35 0 251280 0.261 + 17014 LYITLPLAL 9 54 508.8231017312046 1015.6316505292092 2 508.8231506347656 MULTI HCD FTMS 0 0 0 25489 410490.3125 0.37200845580222275 -2 0.03580474853515625 2 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 137.58523961978855 0.00014495867019203413 2 [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 9 0 + 104.32 0 0 10.271 10.271 99.673 0 0 0 19.366130211356065 97.3282122366414 19.366130211356065 104.3179122800016 0 2.579689690656103 1.2218487496163564 1.4698565171985376 0 + + [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 10.271 + + 127 NaN NaN 216766 NaN 20695 4794 25489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25492 100.33 NaN 342410 35 0 98218 0.261 + 15712 LPESLTSLLVL 11 50 592.8604696760095 1183.706386418819 2 592.8606567382812 MULTI HCD FTMS 0 0 0 25489 99341.9921875 0.2277952001075436 9 -0.1624755859375 3 Unmodified _LPESLTSLLVL_ ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF 38.175570920033316 0.14869995854639997 2 T{[TV]|[{I|L}S]}{I|L}V{I|L} 6 5 53.773 0 0 4.5428 0 0 539.2964344709 0 539.2964344709 0 46.78334379460914 0 0 0 1.6861818737241734 0 0.8494850021680094 0 + T{[TV]|[{I|L}S]}{I|L}V{I|L} 4.5428 + + 71 NaN NaN 157237.5 NaN 20696 4794 25489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25493 100.34 NaN 100820 35 0 17247 0.261 + 33738 YLEKFYQL 8 28 552.2931855740632 NaN 0 552.2933959960938 PEAK HCD FTMS 0 0 0 25489 48438.58203125 0.5959048507301306 -4 0.06830596923828125 4 Unmodified _YLEKFYQL_ ENSG00000118113|ENST00000236826|MMP8;ENST00000528662.6_1_11:102584081-102593757:-|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119904.4 NaN 20697 4794 25489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25494 100.34 NaN 172790 35 0 13988 0.261 + 5879 FPDFVWTL 8 53 512.7602234642819 1023.5058939953639 2 512.75927734375 MULTI HCD FTMS 0 0 0 25489 25843.609375 0.4775252968525888 9 -0.1624755859375 5 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 15.847184025352803 0.47719562709667024 2 DWT{I|L} 4 4 37.167 0 0 3.6313 0 0 490.2633534162125 0 490.2633534162125 0 37.1669877129645 0 0 0 1 0 0 0 DWT{I|L} 3.6313 - 21 NaN NaN 121629.4 NaN 20698 4794 25489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25495 100.34 NaN 74074 35 0 5774.6 0.261 -1 FSMYCMLF 8 47 549.7262833162131 1097.438013699226 2 549.7269287109375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Carbamidomethyl (C) _FSMYC(Carbamidomethyl (C))MLF_ ENSG00000067113|ENST00000307259|PLPP1;IGF2R-PPAP2A|1|fusion;nc|ENSG00000067113|O14494-2|PLPP1 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.3307 0 0 932.3592153367246 0 932.3592153367246 0 -0.34440644703906287 -0.34440644703906287 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3307 + + 4 + NaN NaN 103576.7 NaN 20699 4794 25489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25497 100.35 NaN 135750 35 0 35808 0.327 + 16222 LPVVTEPP 8 35 426.2469649884269 850.4793770436538 2 426.2469787597656 MULTI HCD FTMS 0 0 0 25496 46546.5234375 0.343660075511191 7 -0.1302337646484375 1 Unmodified _LPVVTEPP_ ENST00000488011.1_1_1:1260621-1260936:+|nuORF 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 123854.7 NaN 20700 4795 25496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25498 100.35 NaN 228740 35 0 18621 0.261 + 27015 SYLQSLLLF 9 51 542.3078345791419 1082.6011162250836 2 542.307861328125 MULTI HCD FTMS 0 0 0 25496 109742.484375 0.07886615003704628 10 -0.16533660888671875 2 Unmodified _SYLQSLLLF_ ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-4|IMMT 36.506200033944 0.08138327636155518 2 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KT]{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 9 4 + 56.582 0 0 5.2265 5.2265 92.044 0 0 0 1.3110560414516215 30.63994702129584 1.3110560414516215 56.58207199194287 0 1.5 1.6989700043360187 0.3494850021680094 0.3807196863200844 {[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}D[KT]{I|L}{I|L}{I|L}{M(Oxidation (M))|F} 5.2265 - 125 NaN NaN 142658.9 NaN 20701 4795 25496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25499 100.35 NaN 100280 35 0 14387 0.262 -1 MPVLGMEA 8 51 453.20950337943293 NaN 0 453.2100830078125 PEAK HCD FTMS 0 0 0 25496 27398.05859375 0.49508672219610916 -142 2.3160018920898438 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))PVLGMEA_ ENST00000587928.5_1_19:10794459-10799985:+|nuORF 0.7936320650641473 0.38822285293237185 2 V 1 -1 0.27759 0 0 0.030693 0 0 449.44648981375025 352.8611239068969 802.3076137206472 0 0 0 0 0 0 0 0 0 V 0.030693 + + 1 + NaN NaN 105210.5 NaN 20702 4795 25496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25501 100.36 NaN 229060 35 0 19967 0.327 + 29629 VAPIIFLTI 9 54 493.8177684867202 985.6209840402404 2 493.8179626464844 MULTI HCD FTMS 0 0 0 25500 173107.546875 0.5754101119306281 -4 0.07159423828125 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.07383188072201104 2 {I|L}T{I|L} 3 -1 37.58 0 0 3.8128 0 0 640.3978138654312 0 640.3978138654312 0 20.55890671902647 0 0 0 0.7134679910804405 0 0.4247425010840047 0 {I|L}T{I|L} 3.8128 + + 37 NaN NaN 124993.9 NaN 20703 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25502 100.36 NaN 143410 35 0 11848 0.261 + 35546 YYGPLNLLTF 10 52 600.8187842013778 1199.6230154695554 2 600.81884765625 MULTI HCD FTMS 0 0 0 25500 112188.9765625 1 0 0 2 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 65.23502041540118 0.023231415588018726 2 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 47.423 0 0 3.9531 0 0 707.3263220611365 0 707.3263220611365 0 40.43305028184122 0 0 0 1.5 0 0.3494850021680094 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.9531 + + 41 NaN NaN 118488 NaN 20704 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25503 100.37 NaN 104990 35 0 19441 0.261 + 31982 VYPLAAAFAVL 11 36 567.8316542680915 1133.6487556029829 2 567.83203125 MULTI HCD FTMS 0 0 0 25500 61447.61328125 0.6480561761684431 11 -0.18473052978515625 3 Unmodified _VYPLAAAFAVL_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 21.74664581756881 0.2676031737608615 2 A{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L} 5 6 29.208 0 0 2.5765 0 0 614.3421016912913 0 614.3421016912913 0 22.21848749616356 0 0 0 1 0 0 0 + A{M(Oxidation (M))|F}{[VA]|[{I|L}G]}{I|L} 2.5765 + + 39 NaN NaN 117073.7 NaN 20705 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25504 100.37 NaN 159720 35 0 19465 0.261 + 32706 WPLPPDWPL 9 54 560.7949230768537 1119.5752932205073 2 561.2977905273438 MULTI HCD FTMS 0 0 0 25500 20327.28125 0.3925926076813283 26 -0.44612884521484375 4 Unmodified _WPLPPDWPL_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 11.640296217721598 0.25978676193971967 2 P{I|L} 2 7 25.969 0 0 2.3195 0 0 891.4267769083075 0 891.4267769083075 0 14.164539485499251 0 0 0 0.5 0 0 0 + P{I|L} 2.3195 + + 39 NaN NaN 135636.2 NaN 20706 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25505 100.37 NaN 158450 35 0 16825 0.261 -1 PLSMKCTLF 9 57 548.7803760876238 1095.5461992420476 2 548.78076171875 MULTI HCD FTMS 0 0 0 25500 61774.6484375 1 0 0 5 Carbamidomethyl (C) _PLSMKC(Carbamidomethyl (C))TLF_ nc|ENSG00000140563|Q6DN12-4|MCTP2 18.1463463914782 0.20357593197100715 2 {I|L}P{I|L}D{[YD]|[{M(Oxidation (M))|F}M]}{I|L}T 8 -1 55.315 0 0 5.0491 0 0 0 162.05581079654533 162.05581079654533 35.85138771613167 0 0 0 0 1.035666875892183 1.3979400086720375 0 0 {I|L}P{I|L}D{[YD]|[{M(Oxidation (M))|F}M]}{I|L}T 5.0491 - 74 + NaN NaN 137426.1 NaN 20707 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25506 100.38 NaN 58226 35 0 10636 0.261 -1 0 30 480.7916773217458 959.5688017102916 2 480.7917785644531 MULTI HCD FTMS 0 0 0 25500 5089.44921875 0.04976118888581141 -4 0.07159423828125 6 NaN NaN 2 {I|L}{I|L} 2 -1 25.217 0 0 2.6279 0 0 715.3878788963237 0 715.3878788963237 0 25.12788130611845 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L} 2.6279 - 11 NaN NaN 105340 NaN 20708 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25507 100.38 NaN 45005 35 0 5871.9 0.261 + 3498 EHLRKRLML 9 30 598.3584145762854 NaN 0 598.3587036132812 PEAK HCD FTMS 0 0 0 25500 6376.57958984375 0.32943721159311545 1 -0.0262603759765625 7 Unmodified _EHLRKRLML_ nc|ENSG00000136891|Q9NXF1-2|TEX10 0.5247636613948944 0.2927039108006614 2 M 1 8 4.6041 0 0 0.38538 0 0 633.3360785648771 427.30439172916255 1060.6404702940397 0 0 0 0 0 0 0 0 0 + M 0.38538 + + 1 + NaN NaN 108763.3 NaN 20709 4796 25500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25509 100.39 NaN 533420 35 0 136560 0.327 + 15866 LPLDLEDIF 9 48 537.7892613350518 1073.5639697369036 2 537.7896728515625 MULTI HCD FTMS 0 0 0 25508 162586.96875 0.41443645204659535 -1 0.0262603759765625 1 Unmodified _LPLDLEDIF_ ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP 34.10243960390752 0.09241788333544565 2 ED{I|L}{M(Oxidation (M))|F} 4 5 46.058 0 0 4.2902 0 0 551.3307062918001 0 551.3307062918001 0 33.29812217439503 0 0 0 1 0 0.7614393726401688 0 + ED{I|L}{M(Oxidation (M))|F} 4.2902 + + 21 NaN NaN 188106 NaN 20710 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25510 100.39 NaN 293840 35 0 40444 0.261 + 34610 YPNTYIFDLF 10 49 646.8134748828646 1291.6123968325292 2 646.8135375976562 MULTI HCD FTMS 0 0 0 25508 95294.0546875 0.591410026650603 -1 0.0262603759765625 2 Unmodified _YPNTYIFDLF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 41.95555342248728 0.12843670176738353 2 D{M(Oxidation (M))|F}{I|L}[MN]D{I|L}{M(Oxidation (M))|F} 8 7 51.261 0 0 3.9687 0 0 278.16258437324376 0 278.16258437324376 0 45.77623146104628 0 0 0 0.5 0 1.1307196863200843 0.3807196863200844 D{M(Oxidation (M))|F}{I|L}[MN]D{I|L}{M(Oxidation (M))|F} 3.9687 - 92 NaN NaN 132842.8 NaN 20711 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25511 100.39 NaN 232640 35 0 40295 0.261 + 11014 IYEPNFIFF 9 52 595.3001988742941 1188.585844815388 2 595.2998657226562 MULTI HCD FTMS 0 0 0 25508 64905.1796875 0.40682034687637814 32 -0.5173873901367188 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 29.081581746732265 0.1154664336125038 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 33.94 0 0 2.8555 0 0 763.3539343422502 0 763.3539343422502 0 22.37334396171555 0 0 0 0.7742275032520141 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8555 + + 21 NaN NaN 140974.1 NaN 20712 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25512 100.4 NaN 228150 35 0 58950 0.261 + 3747 ENHDWYCF 8 41 557.2084101626162 1112.4022673920324 2 557.208740234375 MULTI HCD FTMS 0 0 0 25508 37134.421875 0.45609846694033945 -1 0.0262603759765625 4 Unmodified _ENHDWYCF_ ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11 2.302733041254933 0.5385759549224092 2 {I|L}{M(Oxidation (M))|F} 2 7 21.766 0 0 1.9567 0 0 834.2398966418356 0 834.2398966418356 0 14.776296993281406 0 0 0 0.3807196863200844 0 0 0 {I|L}{M(Oxidation (M))|F} 1.9567 - 8 + NaN NaN 130612.9 NaN 20713 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25513 100.4 NaN 55481 35 0 11876 0.261 + -1 YLHGNDWFC 9 21 606.2507184546643 1210.4868839761284 2 606.251220703125 MULTI HCD FTMS 0 0 0 25508 17188.14453125 0.1430388929620937 12 -0.191009521484375 5 Carbamidomethyl (C) _YLHGNDWFC(Carbamidomethyl (C))_ REV__ENSG00000100100|ENST00000215912|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-2|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-4|PIK3IP1 0.6014990680409731 0.3464572424761564 2 {I|L} 1 -1 3.4949 0 0 0.28871 0 0 562.7703445247597 531.5954073541624 1094.365751878922 0 0 0 0 0 0 0 0 0 {I|L} 0.28871 + + 1 + NaN NaN 106630.1 NaN 20714 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25514 100.4 NaN 55000 35 0 5262.7 0.261 + 28148 TISVYPEENN 10 31 583.2728635519552 NaN 0 582.8004150390625 PEAK HCD FTMS 0 0 0 25508 8573.302734375 0.529423566798894 -6 0.11739349365234375 6 Unmodified _TISVYPEENN_ REV__ENSG00000047597|ENST00000378616|XK;REV__XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant 2.9952420565917617 0.3376207769591857 2 NVE 3 -1 16.198 0 0 1.3909 0 0 132.0389153796546 687.3144319865074 819.3533473661621 0 0 0 0 0 0 0 0 0 NVE 1.3909 - 9 + NaN NaN 103784.3 NaN 20715 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25515 100.41 NaN 160150 35 0 17804 0.261 + 10674 IPVMKHKR 8 41 504.8090871564558 1007.6036213797116 2 504.8096618652344 MULTI HCD FTMS 0 0 0 25508 15279.0986328125 0.18315384429525147 12 -0.191009521484375 7 Unmodified _IPVMKHKR_ REV__ENSG00000095574|ENST00000368886|IKZF5 8.593279151180031 0.5292430274356741 2 {I|L}PV 3 -1 28.5 0 0 2.8285 0 0 0 695.3740328424436 695.3740328424436 11.510234424404686 0 0 0 0 0.3807196863200844 0 0 0 {I|L}PV 2.8285 + + 10 + NaN NaN 113837.8 NaN 20716 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25516 100.41 NaN 166300 35 0 16149 0.261 + 10939 IYATIMDFF 9 52 560.7729154775448 1119.5312780218894 2 560.7731323242188 MULTI HCD FTMS 0 0 0 25508 14891.9599609375 0.1693823806576619 -12 0.21811676025390625 8 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 39.957323273324995 0.06554068735427583 2 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 38.416 0 0 3.4315 0 0 692.3559788752916 0 692.3559788752916 0 14.604093769761874 0 0 0 1.3494850021680094 0 0.3494850021680094 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.4315 + + 130 NaN NaN 122513.9 NaN 20717 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25517 100.41 NaN 36008 35 0 6185.4 0.261 + -1 YNIKHFFMK 9 25 622.3169853420354 1242.6194177508708 2 622.3162231445312 MULTI HCD FTMS 0 0 0 25508 14394.2470703125 0.6374657063493011 2 -0.04921722412109375 9 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.26684000660059787 2 [YN]{I|L} 3 -1 39.705 0 0 3.1953 0 0 0 849.404481568193 849.404481568193 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 [YN]{I|L} 3.1953 + + 10 + NaN NaN 103525.7 NaN 20718 4797 25508 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25519 100.42 NaN 848660 35 0 174840 0.327 + 32907 YADGIFDLF 9 68 530.7528689273886 1059.491184921577 2 530.753173828125 MULTI HCD FTMS 0 0 0 25518 591127.8125 0.9736982278735389 2 -0.03917694091796875 1 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 61.357469665136826 0.01568246967499496 2 {NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8 4 + 68.421 0 0 6.4579 6.4579 85.255 0 0 0 15.54576644454535 41.057291669019165 15.54576644454535 1.3033376849500655 0 1.8182503180159344 1.5228787452803376 0.805462187404089 0 {NN|[MP]|[D{I|L}]|[EV]}QY{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}GAY{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[YQ]D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{[DS]|[MA]|[CV]|TT}[HV]D{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}VAD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[Y{I|L}]GAD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[Y{I|L}]QD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 6.4579;6.3349;6.0745;4.632;4.1993;3.8237;3.7805 -;-;-;-;-;-;- 275 NaN NaN 228070.3 NaN 20719 4798 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25520 100.42 NaN 222250 35 0 21837 0.261 + -1 FSMYCIRF 8 64 541.7439551484504 1081.4733573637006 2 541.7440185546875 MULTI HCD FTMS 0 0 0 25518 156368.125 1 0 0 2 Oxidation (M) _FSM(Oxidation (M))YCIRF_ REV__ENST00000374446.6_1_10:44053538-44053610:-|nuORF 12.531546534597751 0.5015908124873912 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 33.94 0 0 3.1383 0 0 690.2261172287382 0 690.2261172287382 0 -5.329241303624741 -5.329241303624741 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 3.1383 - 127 + NaN NaN 116987.7 NaN 20720 4798 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25521 100.43 NaN 37410 35 0 5491 0.261 + -1 YNITWYICL 9 26 623.3020811103038 NaN 0 622.8184814453125 PEAK HCD FTMS 0 0 0 25518 12100.6513671875 0.6630590406709687 2 -0.03917694091796875 3 Carbamidomethyl (C) _YNITWYIC(Carbamidomethyl (C))L_ REV__ENSG00000111331|ENST00000228928|OAS3 4.3292370932331545 0.2742679634796037 2 {I|L} 1 -1 5.4846 0 0 0.44067 0 0 854.4003525508825 274.0842379205688 1128.4845904714514 0 0 0 0 0 0 0 0 0 {I|L} 0.44067 + + 2 + NaN NaN 103568.9 NaN 20721 4798 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25522 100.43 NaN 63805 35 0 16634 0.261 + -1 YLHGNDWFC 9 29 606.2507184546643 1210.4868839761284 2 606.2511596679688 MULTI HCD FTMS 0 0 0 25518 14595.8671875 0.12146608847312942 13 -0.19049072265625 4 Carbamidomethyl (C) _YLHGNDWFC(Carbamidomethyl (C))_ REV__ENSG00000100100|ENST00000215912|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-2|PIK3IP1;REV__nc|ENSG00000100100|Q96FE7-4|PIK3IP1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 100432.2 NaN 20722 4798 25518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25524 100.44 NaN 1010200 35 0 312250 0.327 + 34443 YPETLVNLIVL 11 48 637.3736551363623 1272.7327573395246 2 637.3739013671875 MULTI HCD FTMS 0 0 0 25523 889127.0625 0.42497154615079913 -1 0.016326904296875 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 37.07464296494664 0.15579028104840176 2 VN{I|L}{I|L}V{I|L} 6 5 69.954 0 0 5.4963 0 0 603.2899037091812 0 603.2899037091812 0 58.52690962719841 0 0 0 2.305462187404089 0 0 0.4247425010840047 + VN{I|L}{I|L}V{I|L} 5.4963 + + 101 NaN NaN 244472 NaN 20723 4799 25523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25525 100.44 NaN 233550 35 0 21651 0.262 + 6441 FPIDLLDTL 9 53 523.7919544022196 1045.5693558712392 2 523.7921142578125 MULTI HCD FTMS 0 0 0 25523 118887.6640625 0.40369299955878635 3 -0.0418243408203125 2 Unmodified _FPIDLLDTL_ ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-7|MST1R 88.90359156742426 0.00455469703666567 2 D{I|L}{I|L}DT{I|L} 6 3 53.364 0 0 5.1039 0 0 357.2046070783219 0 357.2046070783219 0 14.490473015330629 0 0 0 1.6549471895720984 0 0.3494850021680094 0 + D{I|L}{I|L}DT{I|L} 5.1039 + + 242 NaN NaN 141102.5 NaN 20724 4799 25523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25526 100.44 NaN 117280 35 0 9407.4 0.261 + 5880 FPDFVWTL 8 44 512.7602234642819 1023.5058939953639 2 512.760986328125 MULTI HCD FTMS 0 0 0 25523 50757.21484375 0.9378664463609718 14 -0.206695556640625 3 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 21.74664581756881 0.4337896562907935 2 DWT{I|L} 4 4 41.938 0 0 4.0975 0 0 490.2632313459 0 490.2632313459 0 39.463950151760656 0 0 0 1 0 0 0 DWT{I|L} 4.0975 - 17 NaN NaN 115057.6 NaN 20725 4799 25523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25527 100.45 NaN 97458 35 0 24956 0.261 -1 TGQLLACLHWL 11 38 437.90023141424973 1310.6788648429492 3 437.9007568359375 MULTI HCD FTMS 0 0 0 25523 15049.748046875 0.2655949694389709 -1 0.016326904296875 4 Carbamidomethyl (C) _TGQLLAC(Carbamidomethyl (C))LHWL_ ENST00000372692.8_1_9:131458110-131458260:+|nuORF 2.6312355333042263 0.4073809613003177 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110606.9 NaN 20726 4799 25523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25528 100.45 NaN 90217 35 0 15505 0.261 + 25657 SHLPGEEH 8 33 453.20950337943293 NaN 0 453.2093811035156 PEAK HCD FTMS 0 0 0 25523 33615.8359375 0.6074428219514635 -138 2.2380828857421875 5 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107644 NaN 20727 4799 25523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25529 100.45 NaN 50475 35 0 3671.9 0.261 + 3215 EDFIVWELD 9 36 583.2728635519552 NaN 0 582.8019409179688 PEAK HCD FTMS 0 0 0 25523 14231.83203125 0.8788523524144988 -4 0.088409423828125 6 Unmodified _EDFIVWELD_ REV__ENSG00000204351|ENST00000375394|SKIC2;REV__ENST00000465703.5_1_6:31929724-31930734:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L}VE 3 -1 16.198 0 0 1.3909 0 0 133.03019775247282 687.3136690729124 820.3438668253852 0 0 0 0 0 0 0 0 0 {I|L}VE 1.3909 - 31 + NaN NaN 97753.4 NaN 20728 4799 25523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25531 100.46 NaN 533270 35 0 130650 0.327 + 4651 EYNILVNFF 9 64 579.7950147695155 1157.575476605831 2 579.7953491210938 MULTI HCD FTMS 0 0 0 25530 249603.59375 0.09652699023625762 15 -0.21967315673828125 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 114.6490535036381 0.0021834323520089267 2 {I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6 3 64.465 0 0 5.569 0 0 406.149891744306 0 406.149891744306 0 48.547619170133174 0 0 0 2.3807196863200843 0 0 0.9027084789088669 + {I|L}{I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.569 + + 146 + NaN NaN 189296 NaN 20729 4800 25530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25532 100.46 NaN 59928 35 0 9951.2 0.261 -1 KYRRFCQL 8 25 585.8130197295411 1169.6114865258821 2 585.8130493164062 MULTI HCD FTMS 0 0 0 25530 38178.5 0.62450223247004 -54 0.9021377563476562 2 Carbamidomethyl (C) _KYRRFC(Carbamidomethyl (C))QL_ sp|P03195|DUT_EBVB9Deoxyuridine5'-triphosphatenucleotidohydrolaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DUTPE=1SV=1 7.910154910731844 0.5302565402355366 2 [YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 9 -1 + 26.941 0 0 2.3034 2.3034 87.934 0 0 0 0.742946587693968 8.982033997137155 0.742946587693968 26.940834170577904 0 0.3807196863200844 0 0 0 [YK][DV]{[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L}{I|L} 2.3034 - 10 NaN NaN 105243.7 NaN 20730 4800 25530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25534 100.47 NaN 472330 35 0 133190 0.327 + 17015 LYITLPLAL 9 50 508.8231017312046 1015.6316505292092 2 508.8232116699219 MULTI HCD FTMS 0 0 0 25533 259092.125 0.23480325453908604 5 -0.06053924560546875 1 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 85.35673624503755 0.00464763827098139 2 [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 9 0 + 81.269 0 0 8.0019 8.0019 97.28 0 0 0 5.6424927368725974 65.78492688874006 5.6424927368725974 81.26947695378034 0 2.305462187404089 0 1.1382104921644451 0 + + [Y{I|L}]{I|L}T{I|L}P{I|L}A{I|L} 8.0019 + + 98 NaN NaN 163870.1 NaN 20731 4801 25533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25535 100.47 NaN 155000 35 0 11462 0.261 + 34598 YPNRPPRSPVL 11 54 648.3646159058342 1294.7146788784682 2 648.3648071289062 MULTI HCD FTMS 0 0 0 25533 108195.890625 0.467222630174398 1 -0.0093841552734375 2 Unmodified _YPNRPPRSPVL_ REV__ENSG00000157833|ENST00000401533|GAREM2;REV__nc|ENSG00000157833|Q75VX8-2|GAREM2;REV__nc|ENSG00000157833|Q75VX8-3|GAREM2 9.5439744041441 0.373925449867384 2 YPET{I|L}V{I|L} 7 -1 39.786 0 0 3.073 0 0 0 476.25657068424067 476.25657068424067 13.359338553900102 0 0 0 0 0.4247425010840047 0 0 0 YPET{I|L}V{I|L} 3.073 - 69 + NaN NaN 115129.4 NaN 20732 4801 25533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25537 100.48 NaN 147380 35 0 6145.1 0.327 + 5128 FERRRELRRQK 11 60 525.3098709833724 1572.9077835503172 3 525.309814453125 MULTI HCD FTMS 0 0 0 25536 76321.4765625 0.6504230281793526 1 -0.0093841552734375 1 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 2 TD 2 11 9.464 0 0 0.60168 0 0 656.429159138011 697.3806246393186 1353.8097837773296 0 0 0 0 0 0 0 0 0 TD 0.60168 - 18 + NaN NaN 107648.7 NaN 20733 4802 25536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25538 100.48 NaN 146730 35 0 15109 0.261 + 6950 FPVNQLFDML 10 52 612.3101882192893 1222.6058235053786 2 612.3103637695312 MULTI HCD FTMS 0 0 0 25536 83042.4765625 0.32298615820098303 6 -0.09033966064453125 2 Unmodified _FPVNQLFDML_ ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B 23.789781309258295 0.28859042913526417 2 {M(Oxidation (M))|F}DM{I|L} 4 6 43.8 0 0 3.5825 0 0 698.37602431465 0 698.37602431465 0 36.81031895404267 0 0 0 1.1861818737241734 0 0 0 + {M(Oxidation (M))|F}DM{I|L} 3.5825 + + 62 NaN NaN 112681.3 NaN 20734 4802 25536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25540 100.49 NaN 315530 35 0 33148 0.327 + 10646 IPVAIFITL 9 47 493.8177684867202 985.6209840402404 2 493.8179626464844 MULTI HCD FTMS 0 0 0 25539 48531.96875 0.1613204396618034 3 -0.04177093505859375 1 Unmodified _IPVAIFITL_ ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENST00000488002.5_1_3:179322588-179334847:+|nuORF 44.40701690623563 0.04511410083598184 2 {I|L}T{I|L} 3 6 38.5 0 0 3.9062 0 0 640.3944569318375 0 640.3944569318375 0 14.458865705675876 0 0 0 0.805462187404089 0 0.4247425010840047 0 + {I|L}T{I|L} 3.9062 + + 41 NaN NaN 149957.5 NaN 20735 4803 25539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25541 100.49 NaN 131960 35 0 10662 0.261 + 35547 YYGPLNLLTF 10 46 600.8187842013778 1199.6230154695554 2 601.3207397460938 MULTI HCD FTMS 0 0 0 25539 39185.46875 0.4386063557495302 7 -0.10996246337890625 2 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 56.17704186161178 0.05532499666593632 2 {I|L}{I|L}T{M(Oxidation (M))|F} 4 6 43.928 0 0 3.6618 0 0 707.3284325683381 0 707.3284325683381 0 36.938200260161125 0 0 0 1.5 0 0 0 + {I|L}{I|L}T{M(Oxidation (M))|F} 3.6618 + + 17 NaN NaN 109010 NaN 20736 4803 25539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25542 100.49 NaN 108260 35 0 13008 0.261 + -1 RMAQRLAEL 9 39 552.3030966218219 1102.5916403104436 2 552.293212890625 MULTI HCD FTMS 0 0 0 25539 24342.603515625 0.7039647553703281 -6 0.10042572021484375 3 Oxidation (M) _RM(Oxidation (M))AQRLAEL_ REV__ENSG00000158106|ENST00000289013|RHPN1 18.1463463914782 0.20357593197100715 2 {I|L}AE{I|L} 4 -1 44.993 0 0 4.0806 0 0 658.3334217755875 0 658.3334217755875 0 44.992822134202015 0 0 0 0.9247425010840047 0 0.3807196863200844 0 {I|L}AE{I|L} 4.0806 + + 8 NaN NaN 99315.4 NaN 20737 4803 25539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25543 100.5 NaN 78483 35 0 7720 0.261 + 27493 SYYGPLNLLTF 11 53 644.3342737520222 1286.6539945708444 2 644.3338623046875 MULTI HCD FTMS 0 0 0 25539 16310.3359375 0.40074870096907483 7 -0.10996246337890625 4 Unmodified _SYYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 49.74193281347159 0.08247801322054248 2 N{I|L}{I|L}T{M(Oxidation (M))|F} 5 6 50.988 0 0 3.9628 0 0 680.3141346662125 0 680.3141346662125 0 31.523722004121453 0 0 0 1.3807196863200843 0 0 0.6747425010840047 + N{I|L}{I|L}T{M(Oxidation (M))|F} 3.9628 + + 88 NaN NaN 106562.2 NaN 20738 4803 25539 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25545 100.5 NaN 92613 35 0 13666 0.327 + -1 LASVCLACLF 10 41 548.7803760876238 1095.5461992420476 2 548.7808227539062 MULTI HCD FTMS 0 0 0 25544 38774.65234375 0.6276790451179975 8 -0.12645721435546875 1 Carbamidomethyl (C) _LASVC(Carbamidomethyl (C))LACLF_ REV__ENSG00000186532|ENST00000305513|SMYD4;REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 9.38312468134398 0.42334543440173333 2 {I|L}{M(Oxidation (M))|F} 2 -1 24.464 0 0 2.233 0 0 817.38090712715 0 817.38090712715 0 -5.969100130080562 -5.969100130080562 0 0 0.3494850021680094 0 0 0 {I|L}{M(Oxidation (M))|F} 2.233 + + 19 NaN NaN 123640.1 NaN 20739 4804 25544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25546 100.51 NaN 43693 35 0 8588.8 0.261 + -1 MRLSMMGM 8 28 486.710693359375 NaN 0 486.710693359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))RLSMMGM_ REV__ENST00000587651.1_1_17:58296950-58303472:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96527.4 NaN 20740 4804 25544 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25548 100.51 NaN 938780 35 0 280280 0.327 + 15867 LPLDLEDIF 9 58 537.7892613350518 1073.5639697369036 2 537.7896118164062 MULTI HCD FTMS 0 0 0 25547 331783.59375 0.845721010104132 7 -0.1168365478515625 1 Unmodified _LPLDLEDIF_ ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP 64.23631603340823 0.01165516075559909 2 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{I|L}ED{I|L}{M(Oxidation (M))|F} 9 2 + 64.161 0 0 5.9764 5.9764 91.58 0 0 0 13.925449767853308 39.634928107446186 13.925449767853308 21.760912590556813 0 1.4247425010840047 1.3979400086720375 0.7059771852360797 0 {NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{I|L}ED{I|L}{M(Oxidation (M))|F};{[QN]|[E{I|L}]|[KN]}[VP]{I|L}ED{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}P]{I|L}E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D;{[QN]|[E{I|L}]|[KN]}[VP]{I|L}E{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}D 5.9764;3.9494;2.4305;0.40347 -;-;-;- 143 NaN NaN 249921.2 NaN 20741 4805 25547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25549 100.52 NaN 283720 35 0 31203 0.261 + 34611 YPNTYIFDLF 10 55 646.8134748828646 1291.6123968325292 2 646.8134155273438 MULTI HCD FTMS 0 0 0 25547 77748.0625 0.4825168145688024 7 -0.1168365478515625 2 Unmodified _YPNTYIFDLF_ ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP 34.93206674587334 0.18938571726943593 2 D{M(Oxidation (M))|F}[NP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8 5 46.235 0 0 3.5796 0 0 278.1610584943375 0 278.1610584943375 0 39.24533159112684 0 0 0 0 0 0.7302046884880937 0.3807196863200844 D{M(Oxidation (M))|F}[NP]{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.5796 - 80 NaN NaN 129245.8 NaN 20742 4805 25547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25550 100.52 NaN 92611 35 0 6882.3 0.261 -1 SCAQAIIPSW 10 45 566.7756400198858 1131.5367271065716 2 567.27685546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _SC(Carbamidomethyl (C))AQAIIPSW_ nc|ENSG00000124789|P49790-3|NUP153 11.494710602746466 0.4035943721457025 2 SW 2 -1 30.217 0 0 2.6704 0 0 840.4154024989529 0 840.4154024989529 0 12.25772496747986 0 0 0 0.9247425010840047 0 0 0 SW 2.6704 + + 13 + NaN NaN 113351.7 NaN 20743 4805 25547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25551 100.52 NaN 51771 35 0 8847.8 0.261 + 33339 YFYPFPVPPL 10 28 620.3255615234375 NaN 0 620.3255615234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YFYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 12.531546534597751 0.32945902202414107 2 Y 1 9 7.7642 0 0 0.62684 0 0 473.1953151349624 599.3560885065061 1072.5514036414686 0 0 0 0 0 0.5 0 0 0 + Y 0.62684 + + 1 + NaN NaN 119602.4 NaN 20744 4805 25547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25553 100.53 NaN 143930 35 0 29071 0.327 + 3748 ENHDWYCF 8 42 557.2084101626162 1112.4022673920324 2 557.2080688476562 MULTI HCD FTMS 0 0 0 25552 21399.19921875 0.26283274290029013 8 -0.1333160400390625 1 Unmodified _ENHDWYCF_ ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11 0.6014990680409731 0.5410999795511968 2 W{I|L}{M(Oxidation (M))|F} 3 6 7.2358 0 0 0.65047 0 0 648.1698893176168 0 648.1698893176168 0 3.2564341674107355 0 0 0 0.15494718957209846 0 0 0 W{I|L}{M(Oxidation (M))|F} 0.65047 - 9 + NaN NaN 126731.1 NaN 20745 4806 25552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25554 100.53 NaN 81044 35 0 8617.2 0.261 + 19105 NFEELNFFF 9 35 603.776936558842 1205.5393201844838 2 603.7774047851562 MULTI HCD FTMS 0 0 0 25552 44250.6875 0.792934647674889 7 -0.11371612548828125 2 Unmodified _NFEELNFFF_ ENSG00000117143|ENST00000367925|UAP1;nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1 24.990960013464015 0.14443998892849796 2 {I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 54.821 0 0 4.5474 0 0 519.1959706037125 0 519.1959706037125 0 54.820618910682484 0 0 0 1.5 0 0 0.4247425010840047 + {I|L}N{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.5474 + + 50 NaN NaN 123886.5 NaN 20746 4806 25552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25555 100.54 NaN 105370 35 0 8591 0.261 + 9712 HVWERHRL 8 37 566.8113917801269 NaN 0 566.8001098632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HVWERHRL_ REV__ENSG00000081248|ENST00000362061|CACNA1S 2.302733041254933 0.38822285293237185 2 SV 2 -1 9.464 0 0 0.83633 0 0 204.16325408311792 738.3213595025999 942.4846135857179 0 0 0 0 0 0 0 0 0 SV 0.83633 - 7 + NaN NaN 109530.2 NaN 20747 4806 25552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25556 100.54 NaN 23909 35 0 4677.3 0.261 + 32644 WMGWKDRW 8 24 582.771949226112 NaN 0 582.298583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _WMGWKDRW_ ENSG00000204580|ENST00000376568|DDR1;ENST00000431373.1_1_6:30853540-30859007:+|nuORF;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-4|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;nc|ENSG00000204580|Q08345-6|DDR1 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107757.5 NaN 20748 4806 25552 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25558 100.54 NaN 363190 35 0 71600 0.327 + 32908 YADGIFDLF 9 60 530.7528689273886 1059.491184921577 2 530.7530517578125 MULTI HCD FTMS 0 0 0 25557 150699.140625 0.2482297111821781 11 -0.1854400634765625 1 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 46.020951573049366 0.037705236580089195 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 5 50.745 0 0 4.7896 0 0 519.2331798952805 0 519.2331798952805 0 41.308422131034845 0 0 0 1.5 0 0.3807196863200844 0 + {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4.7896 + + 91 + NaN NaN 150447.5 NaN 20749 4807 25557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25559 100.55 NaN 204600 35 0 22138 0.261 + 10940 IYATIMDFF 9 56 560.7729154775448 1119.5312780218894 2 560.7731323242188 MULTI HCD FTMS 0 0 0 25557 56228.93359375 0.6395525276010328 -2 0.03232574462890625 2 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 67.34385681178166 0.00994769994983633 2 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 40.49 0 0 3.6167 0 0 692.3563853327574 0 692.3563853327574 0 27.81357210935475 0 0 0 1.3494850021680094 0 0.3807196863200844 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6167 + + 225 NaN NaN 133026.2 NaN 20750 4807 25557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25560 100.55 NaN 179180 35 0 24574 0.261 + 11015 IYEPNFIFF 9 43 595.3001988742941 1188.585844815388 2 595.3007202148438 MULTI HCD FTMS 0 0 0 25557 40775.48046875 0.25557736976025314 42 -0.6956558227539062 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 22.736283301280096 0.1639198954644489 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 34.253 0 0 2.8818 0 0 763.3537547419678 0 763.3537547419678 0 22.685690803236298 0 0 0 0.805462187404089 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8818 + + 30 NaN NaN 122088.5 NaN 20751 4807 25557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25561 100.56 NaN 107080 35 0 9525.8 0.261 + 13850 KYPSPFFVF 9 40 566.2976532089688 NaN 0 566.2965698242188 PEAK HCD FTMS 0 0 0 25557 29467.521484375 0.3558189819039826 40 -0.6529769897460938 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 17.11289562659939 0.20677709319598864 2 V 1 8 10.485 0 0 0.92736 0 0 165.0813413297713 863.4095359198965 1028.4908772496678 0 0 0 0 0 0.5 0 0 0 + V 0.92736 + + 4 + NaN NaN 114719.2 NaN 20752 4807 25557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25562 100.56 NaN 94380 35 0 17731 0.261 + 32992 YASPIAILI 9 25 480.7916773217458 959.5688017102916 2 480.79156494140625 MULTI HCD FTMS 0 0 0 25557 32849.22265625 0.3211774600928632 7 -0.11704254150390625 5 Unmodified _YASPIAILI_ REV__ENSG00000101292|ENST00000678254|PROKR2;REV__ENSG00000169618|ENST00000303786|PROKR1 10.823927491677226 0.26684000660059787 2 A{I|L}{I|L}{I|L} 4 -1 37.295 0 0 3.8866 0 0 531.269823142775 0 531.269823142775 0 37.29486901908295 0 0 0 0.6861818737241735 0 0 0 A{I|L}{I|L}{I|L} 3.8866 + + 12 NaN NaN 110236.1 NaN 20753 4807 25557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25563 100.56 NaN 69938 35 0 14548 0.261 + 22895 QYPVFPWVL 9 31 574.8102676767713 1147.6059824203426 2 574.8106079101562 MULTI HCD FTMS 0 0 0 25557 4937.6025390625 0.2195997287374242 -4 0.05804443359375 6 Unmodified _QYPVFPWVL_ ENSG00000128815|ENST00000325239|WDFY4;ENSG00000160796|ENST00000450053|NBEAL2;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000128815|Q6ZS81-4|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA 11.640296217721598 0.25978676193971967 2 V{I|L} 2 7 20.969 0 0 1.8272 0 0 917.4393403035189 0 917.4393403035189 0 10.484550065040281 0 0 0 0 0 0 0 + V{I|L} 1.8272 + + 2 NaN NaN 114607 NaN 20754 4807 25557 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25565 100.57 NaN 1629200 35 0 478720 0.327 + 34444 YPETLVNLIVL 11 55 637.3736551363623 1272.7327573395246 2 637.3739624023438 MULTI HCD FTMS 0 0 0 25564 645814.5625 0.3086767063198314 8 -0.1266326904296875 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 69.33821966488729 0.015966906237807294 2 VN{I|L}{I|L}V{I|L} 6 5 74.201 0 0 5.8301 0 0 603.2904834318362 0 603.2904834318362 0 45.607346925073955 0 0 0 2.3494850021680094 0 0 0.805462187404089 + VN{I|L}{I|L}V{I|L} 5.8301 + + 124 NaN NaN 361784.9 NaN 20755 4808 25564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25566 100.57 NaN 292280 35 0 47021 0.261 + 4652 EYNILVNFF 9 52 579.7950147695155 1157.575476605831 2 579.795654296875 MULTI HCD FTMS 0 0 0 25564 67939.8359375 0.02627377187028986 23 -0.36859893798828125 2 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 34.93206674587334 0.08860942999206235 2 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 51.498 0 0 4.4488 0 0 519.2308216779312 0 519.2308216779312 0 51.49797211252192 0 0 0 1.6549471895720984 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.4488 + + 37 NaN NaN 138513.1 NaN 20756 4808 25564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25568 100.58 NaN 303180 35 0 53982 0.327 + 4653 EYNILVNFF 9 50 579.7950147695155 1157.575476605831 2 579.795166015625 MULTI HCD FTMS 0 0 0 25567 95937.203125 0.03710094606496722 24 -0.3982391357421875 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 49.55428908609986 0.03219431099695407 2 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 56.498 0 0 4.8807 0 0 519.23051650215 0 519.23051650215 0 54.90417829939986 0 0 0 2.1549471895720984 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.8807 + + 69 NaN NaN 137519.7 NaN 20757 4809 25567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25569 100.58 NaN 226040 35 0 57554 0.261 + 32490 WFDPAIFTI 9 51 555.2866700487257 1108.5587871642513 2 555.2872924804688 MULTI HCD FTMS 0 0 0 25567 83488.171875 0.4647728144536989 -5 0.07448577880859375 2 Unmodified _WFDPAIFTI_ ENSG00000163655|ENST00000496455|GMPS 41.8396318013385 0.056899836730939755 2 {I|L}{M(Oxidation (M))|F}T{I|L} 4 5 42.077 0 0 3.7956 0 0 616.2643910138687 0 616.2643910138687 0 31.496081323441704 0 0 0 1.1643943297944483 0 0 0 + {I|L}{M(Oxidation (M))|F}T{I|L} 3.7956 + + 83 NaN NaN 125938.4 NaN 20758 4809 25567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25570 100.58 NaN 211490 35 0 33831 0.261 + 5881 FPDFVWTL 8 56 512.7602234642819 1023.5058939953639 2 512.7603759765625 MULTI HCD FTMS 0 0 0 25567 51003.38671875 0.9424150872253493 24 -0.3982391357421875 3 Unmodified _FPDFVWTL_ ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3 15.847184025352803 0.47719562709667024 2 QWT{I|L} 4 5 26.503 0 0 2.5894 0 0 477.21602065254064 0 477.21602065254064 0 24.284569062443136 0 0 0 0.9247425010840047 0 0 0 QWT{I|L} 2.5894 - 45 NaN NaN 120402.1 NaN 20759 4809 25567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25571 100.59 NaN 121780 35 0 15139 0.261 + 25865 SMRQRLAEL 9 46 552.3030966218219 1102.5916403104436 2 552.3035278320312 MULTI HCD FTMS 0 0 0 25567 34579.29296875 1 0 0 4 Unmodified _SMRQRLAEL_ ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 26.268140514670165 0.13340543277302316 2 {I|L}AE{I|L} 4 5 38.928 0 0 3.5306 0 0 658.3298207013687 0 658.3298207013687 0 28.470325397914564 0 0 0 1 0 0 0 + {I|L}AE{I|L} 3.5306 + + 25 NaN NaN 121836.7 NaN 20760 4809 25567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25572 100.59 NaN 103890 35 0 6964.7 0.261 -1 FSEISKLLM 9 51 542.2909801721377 1082.5674074110752 2 542.2908935546875 MULTI HCD FTMS 0 0 0 25567 20314.37890625 0.7262150776095015 -1 0.0096282958984375 5 Oxidation (M) _FSEISKLLM(Oxidation (M))_ ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF;nc|ENSG00000053524|Q86YR7-4|MCF2L2 13.042465956692817 0.2476723265019929 2 {M(Oxidation (M))|F}{I|L}{[QG]|[NA]}D{I|L}{I|L}{M(Oxidation (M))|F} 8 -1 39.418 0 0 3.6411 0 0 131.09288537297317 0 131.09288537297317 0 24.469034597845436 0 0 0 0.7302046884880937 0 0 0 {M(Oxidation (M))|F}{I|L}{[QG]|[NA]}D{I|L}{I|L}{M(Oxidation (M))|F} 3.6411 - 139 + NaN NaN 124365.9 NaN 20761 4809 25567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25574 100.6 NaN 207580 35 0 48048 0.327 + 17016 LYITLPLAL 9 48 508.8231017312046 1015.6316505292092 2 508.82318115234375 MULTI HCD FTMS 0 0 0 25573 47586.29296875 0.04312526465446577 14 -0.23284912109375 1 Unmodified _LYITLPLAL_ ENSG00000143418|ENST00000368954|CERS2 36.04419817259434 0.08350412372117409 2 {I|L}[{I|L}P]A{I|L} 5 4 29.833 0 0 2.9374 0 0 490.280565330275 0 490.280565330275 0 25.228787452803374 0 0 0 1 0 0 0 + {I|L}[{I|L}P]A{I|L} 2.9374 + + 13 NaN NaN 134471.2 NaN 20762 4810 25573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25575 100.6 NaN 140110 35 0 9966.2 0.261 + 954 AYEISQFII 9 49 542.2909801721377 1082.5674074110752 2 542.3075561523438 MULTI HCD FTMS 0 0 0 25573 27972.951171875 1 0 0 2 Unmodified _AYEISQFII_ REV__PPEF1|p.T43I|1|0.68|ENSG00000086717|chrX:18730262-18730262|C/T|missense_variant 25.399314129420986 0.14091189997036632 2 {I|L}{M(Oxidation (M))|F}{[QG]|[NA]}D{I|L}{I|L}{M(Oxidation (M))|F} 8 -1 44.87 0 0 4.1448 0 0 131.09702131898047 0 131.09702131898047 0 25.406075122407685 0 0 0 0.8252574989159953 0 0 0.3252574989159953 {I|L}{M(Oxidation (M))|F}{[QG]|[NA]}D{I|L}{I|L}{M(Oxidation (M))|F} 4.1448 - 198 + NaN NaN 112366.8 NaN 20763 4810 25573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25576 100.6 NaN 76273 35 0 7435.3 0.262 -1 RDFAGELEVLC 11 48 436.8792766902499 NaN 0 436.8790588378906 PEAK HCD FTMS 0 0 0 25573 11770.6591796875 0.4986983036945485 1 -0.01299285888671875 3 Carbamidomethyl (C) _RDFAGELEVLC(Carbamidomethyl (C))_ ENSG00000066056|ENST00000372476|TIE1;ENSG00000120156|ENST00000380036|TEK;nc|ENSG00000120156|Q02763-2|TEK;nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant 1.214830529360525 0.33867401910978034 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120099 NaN 20764 4810 25573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25578 100.61 NaN 429040 35 0 77423 0.327 -1 0 65 526.3724601135724 1050.7303672939447 2 526.3726806640625 MULTI HCD FTMS 0 0 0 25577 144885.8125 0.7954527381322581 -3 0.04199981689453125 1 NaN NaN 2 Q{I|L}{I|L} 3 -1 24.169 0 0 2.3002 0 0 678.5013981657542 0 678.5013981657542 0 15.31743128760553 0 0 0 0.4247425010840047 0 0 0 Q{I|L}{I|L} 2.3002 - 25 NaN NaN 160334.1 NaN 20765 4811 25577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25579 100.61 NaN 262870 35 0 27353 0.261 + 29630 VAPIIFLTI 9 49 493.81777459314867 985.6209962530974 2 493.8179626464844 MULTI HCD FTMS 0 0 0 25577 110844.5234375 0.6954753438848644 -4 0.064910888671875 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 38.15118350030904 0.07383188072201104 2 {I|L}T{I|L} 3 -1 38.698 0 0 3.9262 0 0 640.3931141584 0 640.3931141584 0 23.247942838938727 0 0 0 0.8252574989159953 0 0.4247425010840047 0 {I|L}T{I|L} 3.9262 + + 35 NaN NaN 128584.1 NaN 20766 4811 25577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25580 100.62 NaN 67079 35 0 8716.5 0.261 + 13626 KYPENFFLL 9 31 585.8130197295411 1169.6114865258821 2 585.8132934570312 MULTI HCD FTMS 0 0 0 25577 27854.138671875 0.45562219008384336 -43 0.7515716552734375 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 13.042465956692817 0.2476723265019929 2 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.431488278441 0 925.431488278441 0 24.731975075880328 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 7 NaN NaN 94712.5 NaN 20767 4811 25577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25581 100.62 NaN 75189 35 0 13540 0.261 + 16679 LWRRSYNV 8 30 547.2987286407443 1092.5829043482886 2 547.2988891601562 MULTI HCD FTMS 0 0 0 25577 29606.69921875 0.658661468506358 -3 0.04199981689453125 4 Unmodified _LWRRSYNV_ ENSG00000172331|ENST00000344924|BPGM 12.531546534597751 0.5015908124873912 2 {I|L}WD[{I|L}V]{I|L}A 7 6 67.211 0 0 6.1516 0 0 0 279.0964449518188 279.0964449518188 67.21085733450202 0 0 0 0 1.4247425010840047 1.6989700043360187 0.4247425010840047 0 {I|L}WD[{I|L}V]{I|L}A 6.1516 - 44 + NaN NaN 101752.2 NaN 20768 4811 25577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25582 100.62 NaN 167410 35 0 27500 0.261 + 21435 PVVLRKRR 8 56 512.3478014734766 1022.6810500137532 2 512.347900390625 MULTI HCD FTMS 0 0 0 25577 28863.58984375 0.2807036944906686 -3 0.04199981689453125 5 Unmodified _PVVLRKRR_ DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13 0.6903765706972694 0.5409681170271811 2 TW 2 8 6.4537 0 0 0.63105 0 0 130.26816046472817 602.2608126275999 732.528973092328 0 0 0 0 0 0 0 0 0 TW 0.63105 - 11 + NaN NaN 119837.6 NaN 20769 4811 25577 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25584 100.63 NaN 141360 35 0 21523 0.327 + 25396 SELFGKFLFI 10 49 600.836160260213 1199.6577675872259 2 600.8184814453125 MULTI HCD FTMS 0 0 0 25583 13008.45703125 0.31211716579039195 -3 0.051971435546875 1 Unmodified _SELFGKFLFI_ ENSG00000143315|ENST00000368090|PIGM 3.5964929083625545 0.45626689593999237 2 T{I|L}V[DN]{I|L}{I|L}[{M(Oxidation (M))|F}T] 9 7 27.101 0 0 2.259 0 0 165.1149683357615 0 165.1149683357615 0 19.33656523892577 0 0 0 0 0 0 0.4247425010840047 T{I|L}V[DN]{I|L}{I|L}[{M(Oxidation (M))|F}T] 2.259 - 47 + NaN NaN 105432.8 NaN 20770 4812 25583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25585 100.63 NaN 234890 35 0 23068 0.261 + 19112 NFFPIAGLEF 10 49 577.7976514836943 1153.5807500341884 2 577.7977905273438 MULTI HCD FTMS 0 0 0 25583 46993.18359375 0.6288866777546326 -2 0.0325927734375 2 Unmodified _NFFPIAGLEF_ ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2 57.72198328787511 0.049706386133502735 2 {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}[{I|L}P]A{[VA]|[{I|L}G]}E{M(Oxidation (M))|F} 10 0 + 53.958 0 0 4.6774 4.6774 87.74 0 0 0 1.2937092834840769 46.25447181216778 1.2937092834840769 11.53212513775344 0 2.4247425010840047 0 0 0.3054621874040891 + + {[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}[{I|L}P]A{[VA]|[{I|L}G]}E{M(Oxidation (M))|F};{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F}[{I|L}P][Q{I|L}]E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V[WK]{[VA]|[{I|L}G]}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V{I|L}[NS][W{I|L}]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VA{[MS]|[{M(Oxidation (M))|F}A]}{I|L}[NP]{M(Oxidation (M))|F} 4.6774;3.6777;2.5659;1.6105;0.61554 +;-;-;-;- + 156 NaN NaN 119241.7 NaN 20771 4812 25583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25586 100.64 NaN 35367 35 0 3885.2 0.261 + 28080 TGWSVLYTITF 11 29 644.3342737520222 1286.6539945708444 2 644.3351440429688 MULTI HCD FTMS 0 0 0 25583 14787.4931640625 0.3633321041819971 15 -0.245361328125 3 Unmodified _TGWSVLYTITF_ ENST00000242465.3_1_10:70864296-70864419:+|nuORF 4.897010918128616 0.3974440401582579 2 T{M(Oxidation (M))|F} 2 9 25.969 0 0 2.0183 0 0 1020.5282459943375 0 1020.5282459943375 0 17.01667520279372 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.0183 + + 9 NaN NaN 105325.7 NaN 20772 4812 25583 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25588 100.64 NaN 100910 35 0 10440 0.327 + 30009 VFNGLSILASF 11 35 584.3238570979794 1166.6331612627587 2 584.3238525390625 MULTI HCD FTMS 0 0 0 25587 62538.21484375 0.6254165952109081 -1 0.01293182373046875 1 Unmodified _VFNGLSILASF_ ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR 51.487983226225225 0.07530802670407631 2 S{I|L}{I|L}AS{M(Oxidation (M))|F} 6 5 72.568 0 0 6.2203 0 0 530.283970272449 0 530.283970272449 0 68.58857830256703 0 0 0 2.3807196863200843 0 0.7614393726401688 0 + S{I|L}{I|L}AS{M(Oxidation (M))|F} 6.2203 + + 40 NaN NaN 115182 NaN 20773 4813 25587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25589 100.65 NaN 141710 35 0 9290.4 0.261 + -1 WFCCFIKK 8 48 566.2767182466217 1130.5388835600434 2 566.77392578125 MULTI HCD FTMS 0 0 0 25587 5383.64013671875 0.13861491033808693 1 -0.01959991455078125 2 Carbamidomethyl (C) _WFC(Carbamidomethyl (C))CFIKK_ REV__ENSG00000186188|ENST00000371481|FFAR4;REV__nc|ENSG00000186188|Q5NUL3-1|FFAR4 14.581692164780916 0.48650662947107914 2 W{M(Oxidation (M))|F}D 3 -1 24.781 0 0 2.192 0 0 0 679.3427228121833 679.3427228121833 3.0153844027245924 0 0 0 0 0.7614393726401688 0 0 0 W{M(Oxidation (M))|F}D 2.192 - 49 + NaN NaN 115328.1 NaN 20774 4813 25587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25590 100.65 NaN 69338 35 0 4562.1 0.261 + 8360 GYKDLDLIF 9 38 542.2909801721377 1082.5674074110752 2 542.2890625 MULTI HCD FTMS 0 0 0 25587 27062.62109375 0.9674567737765088 3 -0.05210113525390625 3 Unmodified _GYKDLDLIF_ ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A 11.640296217721598 0.25978676193971967 2 {I|L}{I|L}D{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}{I|L} 8 7 34.73 0 0 3.2081 0 0 165.07855422187657 0 165.07855422187657 0 33.13608784304506 0 0 0 0.5 0 0 0 {I|L}{I|L}D{[QG]|[NA]}{I|L}{M(Oxidation (M))|F}{I|L} 3.2081 - 72 NaN NaN 114252.4 NaN 20775 4813 25587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25591 100.65 NaN 206250 35 0 24147 0.261 + -1 ILSPMELLL 9 41 522.8038852386705 1043.593217544141 2 522.8041381835938 MULTI HCD FTMS 0 0 0 25587 25688.65234375 0.16404377197940764 -5 0.07453155517578125 4 Oxidation (M) _ILSPM(Oxidation (M))ELLL_ REV__ENST00000514947.1_1_5:126506935-126507295:-|nuORF 16.942295170755138 0.21397866736869717 2 {I|L}{I|L}{I|L} 3 -1 22.664 0 0 2.1717 0 0 686.3303629777162 0 686.3303629777162 0 15.674100046527357 0 0 0 0.4247425010840047 0 0 0 {I|L}{I|L}{I|L} 2.1717 + + 6 NaN NaN 130984.4 NaN 20776 4813 25587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25592 100.66 NaN 28677 35 0 4582.2 0.261 + 19106 NFEELNFFF 9 21 603.776936558842 1205.5393201844838 2 603.77490234375 MULTI HCD FTMS 0 0 0 25587 18487.740234375 0.331284565670285 14 -0.23242950439453125 5 Unmodified _NFEELNFFF_ ENSG00000117143|ENST00000367925|UAP1;nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1 8.745405648335112 0.2847203663274469 2 N 1 8 13.979 0 0 1.1596 0 0 459.2195702838963 629.2581270807249 1088.4776973646212 0 0 0 0 0 0.8494850021680094 0 0 0 + N 1.1596 + + 2 + NaN NaN 90162.7 NaN 20777 4813 25587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25594 100.66 NaN 375730 35 0 49671 0.327 + 15868 LPLDLEDIF 9 50 537.7892613350518 1073.5639697369036 2 537.7893676757812 MULTI HCD FTMS 0 0 0 25593 147145.015625 0.37507469805734867 16 -0.25482940673828125 1 Unmodified _LPLDLEDIF_ ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP 14.838274106304384 0.23215694253501695 2 ED{I|L}{M(Oxidation (M))|F} 4 5 36.67 0 0 3.4157 0 0 551.3311634748062 0 551.3311634748062 0 26.49288766643714 0 0 0 0.9247425010840047 0 0 0 + ED{I|L}{M(Oxidation (M))|F} 3.4157 + + 20 NaN NaN 143664.4 NaN 20778 4814 25593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25595 100.67 NaN 48875 35 0 4995.8 0.261 + -1 LASVCLACLF 10 28 548.7803760876238 1095.5461992420476 2 548.7802734375 MULTI HCD FTMS 0 0 0 25593 28347.0546875 0.4588784461667945 18 -0.2907562255859375 2 Carbamidomethyl (C) _LASVC(Carbamidomethyl (C))LACLF_ REV__ENSG00000186532|ENST00000305513|SMYD4;REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 5.731851221503515 0.44496410492002586 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.914 0 0 817.37700087715 0 817.37700087715 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.914 + + 7 NaN NaN 110220.4 NaN 20779 4814 25593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25596 100.67 NaN 68021 35 0 9732.2 0.261 + 8130 GMGRGRAAW 9 37 481.24097510885167 NaN 0 481.2410888671875 PEAK HCD FTMS 0 0 0 25593 21428.88671875 0.7925846499685504 -24 0.4058685302734375 3 Unmodified _GMGRGRAAW_ REV__ENST00000529919.5_1_11:57520766-57558858:+|nuORF 1.844237919475145 0.28630992268396543 2 {I|L} 1 -1 6.9897 0 0 0.72774 0 0 131.99280791567486 712.3688448541624 844.3616527698373 0 0 0 0 0 0 0 0 0 {I|L} 0.72774 - 1 + NaN NaN 93499.3 NaN 20780 4814 25593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25597 100.67 NaN 192810 35 0 43166 0.261 + 8702 HGKKKRRKR 9 33 597.3929210185102 NaN 0 597.8525390625 PEAK HCD FTMS 0 0 0 25593 17394.67578125 0.7799586448449375 -2 0.03253173828125 4 Unmodified _HGKKKRRKR_ REV__ENSG00000185404|ENST00000415673|SP140L;REV__nc|ENSG00000185404|Q9H930-1|SP140L;REV__nc|ENSG00000185404|Q9H930-2|SP140L;REV__SP140L|p.W220C|1|0.34|ENSG00000185404|chr2:230383532-230383532|G/T|missense_variant 0.5247636613948944 0.2927039108006614 2 M 1 -1 5.4846 0 0 0.45982 0 0 632.407268605715 426.3003388403848 1058.7076074460997 0 0 0 0 0 0 0 0 0 M 0.45982 - 1 + NaN NaN 123109.8 NaN 20781 4814 25593 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25599 100.68 NaN 122110 35 0 18780 0.327 + 32909 YADGIFDLF 9 51 530.7528689273886 1059.491184921577 2 530.7529907226562 MULTI HCD FTMS 0 0 0 25598 39532.359375 0.0651172004651657 19 -0.31049346923828125 1 Unmodified _YADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 5 43.928 0 0 4.1461 0 0 519.2331604094558 0 519.2331604094558 0 37.98577533287428 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4.1461 + + 51 + NaN NaN 106080.1 NaN 20782 4815 25598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25600 100.68 NaN 203040 35 0 18044 0.261 + 11016 IYEPNFIFF 9 51 595.3001988742941 1188.585844815388 2 595.2998657226562 MULTI HCD FTMS 0 0 0 25598 43104.16796875 0.27017339215905 50 -0.8148956298828125 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 17.11289562659939 0.2125047172822487 2 YS{M(Oxidation (M))|F} 3 7 34.693 0 0 2.9188 0 0 773.4113516673034 0 773.4113516673034 0 20.643265708843046 0 0 0 0.8494850021680094 0 0 0 YS{M(Oxidation (M))|F} 2.9188 - 21 NaN NaN 123430.4 NaN 20783 4815 25598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25601 100.69 NaN 152550 35 0 15039 0.261 + -1 WFCCFIKK 8 52 566.2767182466217 1130.5388835600434 2 566.2981567382812 MULTI HCD FTMS 0 0 0 25598 34996.08984375 1 0 0 3 Carbamidomethyl (C) _WFC(Carbamidomethyl (C))CFIKK_ REV__ENSG00000186188|ENST00000371481|FFAR4;REV__nc|ENSG00000186188|Q5NUL3-1|FFAR4 9.347437153973935 0.5250182646323369 2 W{M(Oxidation (M))|F}[H{I|L}]QQSW 8 -1 + 28.835 0 0 2.5505 2.5505 85.92 0 0 0 8.829628067253168 4.52078257768628 4.52078257768628 11.748650278674045 0 0.3494850021680094 0 0 0.4247425010840047 W{M(Oxidation (M))|F}[H{I|L}]QQSW;{[CT]|[{M(Oxidation (M))|F}G]}SQQ[YR]V{M(Oxidation (M))|F};[YQ]QQ[YR]V{M(Oxidation (M))|F};[C(Carbamidomethyl (C))K]C(Carbamidomethyl (C))V[YR]V{M(Oxidation (M))|F};W{M(Oxidation (M))|F}[H{I|L}]N[NS][{I|L}T];[YQ]QQ[H{I|L}]{M(Oxidation (M))|F}[PA];[C(Carbamidomethyl (C))K]C(Carbamidomethyl (C))V[H{I|L}]{M(Oxidation (M))|F}[PA] 2.5505;1.5113;1.3603;1.133;0.95963;0.76101;0.53367 -;-;-;-;-;-;- 104 + NaN NaN 116494.5 NaN 20784 4815 25598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25602 100.69 NaN 19271 35 0 3208.8 0.261 + 35025 YTGPYGPSFAF 11 20 603.776936558842 1205.5393201844838 2 603.7781982421875 MULTI HCD FTMS 0 0 0 25598 4999.67626953125 0.08958994233183981 16 -0.25823974609375 4 Unmodified _YTGPYGPSFAF_ REV__HOXB13|p.Y130S|1|0.42|ENSG00000159184|chr17:48728205-48728205|T/G|missense_variant 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89730.5 NaN 20785 4815 25598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25604 100.69 NaN 1466800 35 0 460780 0.327 + 34445 YPETLVNLIVL 11 56 637.3736551363623 1272.7327573395246 2 637.3740234375 MULTI HCD FTMS 0 0 0 25603 303985.46875 0.145294390543942 16 -0.2582550048828125 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 69.33821966488729 0.015966906237807294 2 VN{I|L}{I|L}V{I|L} 6 5 78.448 0 0 6.1638 0 0 603.290030329369 0 603.290030329369 0 48.2711470149615 0 0 0 2.3494850021680094 0 0 1.2302046884880937 + VN{I|L}{I|L}V{I|L} 6.1638 + + 142 NaN NaN 311227.4 NaN 20786 4816 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25605 100.7 NaN 189700 35 0 18529 0.261 + 11017 IYEPNFIFF 9 46 595.3001988742941 1188.585844815388 2 595.3006591796875 MULTI HCD FTMS 0 0 0 25603 53238.609375 0.3336952403095294 51 -0.8344955444335938 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 20.41453444215458 0.18397929046831515 2 C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 7 35.005 0 0 2.9451 0 0 773.4109930381117 0 773.4109930381117 0 29.291746928241125 0 0 0 0.8807196863200843 0 0 0 C{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9451 - 19 NaN NaN 125692.6 NaN 20787 4816 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25606 100.7 NaN 175150 35 0 11455 0.261 + 7425 FVSAAAQPRW 10 58 566.799051011477 NaN 0 566.7986450195312 PEAK HCD FTMS 0 0 0 25603 11645.5810546875 0.3051925400919385 1 -0.01958465576171875 3 Unmodified _FVSAAAQPRW_ REV__ENST00000264852.8_2_3:113251555-113251765:+|nuORF 6.723162845929126 0.3344301934401713 2 {M(Oxidation (M))|F}D 2 -1 8.5835 0 0 0.75854 0 0 187.12744665010388 679.3434669259826 866.4709135760866 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D 0.75854 - 68 + NaN NaN 130087.4 NaN 20788 4816 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25607 100.71 NaN 90494 35 0 13900 0.261 + 10941 IYATIMDFF 9 43 560.7729154775448 1119.5312780218894 2 560.7732543945312 MULTI HCD FTMS 0 0 0 25603 18879.7265625 0.21473956683406414 7 -0.12769317626953125 4 Unmodified _IYATIMDFF_ ENSG00000169599|ENST00000410022|NFU1;nc|ENSG00000169599|Q9UMS0-3|NFU1 7.289230182591677 0.29575926068275815 2 D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 13.557 0 0 1.2109 0 0 692.3566697228645 0 692.3566697228645 0 0.8534811358448753 0 0 0 0.8494850021680094 0 0 0 + D{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.2109 + + 42 + NaN NaN 106406.1 NaN 20789 4816 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25608 100.71 NaN 75425 35 0 6679.3 0.261 + 17770 MELGLSWVF 9 47 541.272924640181 1080.531296347162 2 541.2730712890625 MULTI HCD FTMS 0 0 0 25603 12906.7109375 0.30442765176821096 -2 0.032501220703125 5 Unmodified _MELGLSWVF_ nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000211942|P01766|IGHV3-13 12.531546534597751 0.2520865569484384 2 WV{M(Oxidation (M))|F} 3 6 33.188 0 0 3.0714 0 0 630.3063340442308 0 630.3063340442308 0 24.235162698957282 0 0 0 1 0 0 0 + WV{M(Oxidation (M))|F} 3.0714 + + 33 + NaN NaN 104607 NaN 20790 4816 25603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25610 100.71 NaN 452560 35 0 129740 0.327 + 32491 WFDPAIFTI 9 53 555.2866700487257 1108.5587871642513 2 555.2870483398438 MULTI HCD FTMS 0 0 0 25609 159023.9375 0.8852751394298524 3 -0.06873321533203125 1 Unmodified _WFDPAIFTI_ ENSG00000163655|ENST00000496455|GMPS 68.08070601005525 0.009709267492204555 2 [W{M(Oxidation (M))|F}]D[PA]{I|L}{M(Oxidation (M))|F}T{I|L} 9 0 + 47.074 0 0 4.2464 4.2464 89.917 0 0 0 3.8984746084197752 29.07312836760731 3.8984746084197752 35.53395642852614 0 1.774227503252014 0 0 0 + + [W{M(Oxidation (M))|F}]D[PA]{I|L}{M(Oxidation (M))|F}T{I|L};[{M(Oxidation (M))|F}T]{I|L}{I|L}[VS][NG]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[{M(Oxidation (M))|F}T]{I|L}{I|L}[PA]D[W{M(Oxidation (M))|F}] 4.2464;1.041;0.75435 +;-;- + 144 NaN NaN 174492.5 NaN 20791 4817 25609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25611 100.72 NaN 99094 35 0 13111 0.261 + 23400 RLFVGMILI 9 47 531.3326088298186 NaN 0 531.3193359375 PEAK HCD FTMS 0 0 0 25609 6840.18994140625 0.21913033997584183 3 -0.06873321533203125 2 Unmodified _RLFVGMILI_ ATP6V0C|p.I136M|1|0.14|ENSG00000185883|chr16:2519685-2519685|C/G|missense_variant;ENSG00000185883|ENST00000330398|ATP6V0C 7.910154910731844 0.25691533546754686 2 {M(Oxidation (M))|F}D{I|L} 3 7 8.4164 0 0 0.79351 0 0 520.3932705185274 162.05596338443596 682.4492339029633 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D{I|L} 0.79351 - 27 + NaN NaN 117818.2 NaN 20792 4817 25609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25612 100.72 NaN 94603 35 0 11746 0.261 + 29820 VEPSLLEIL 9 34 506.79985180803493 1011.5851506828699 2 506.8002624511719 MULTI HCD FTMS 0 0 0 25609 36228.2265625 0.4742768530696024 -3 0.05208587646484375 3 Unmodified _VEPSLLEIL_ ENSG00000117400|ENST00000372470|MPL 14.838274106304384 0.23215694253501695 2 {I|L}E{I|L}{I|L} 4 5 36.731 0 0 3.6311 0 0 525.2797718732437 0 525.2797718732437 0 36.731236834369994 0 0 0 1 0 0 0 + {I|L}E{I|L}{I|L} 3.6311 + + 18 NaN NaN 124984.4 NaN 20793 4817 25609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25613 100.72 NaN 33276 35 0 3326.7 0.261 + 4772 EYVALGSFFF 10 32 590.2892028647134 1178.5638527962267 2 590.290283203125 MULTI HCD FTMS 0 0 0 25609 11161.2099609375 0.5128068002853643 -8 0.13658905029296875 4 Unmodified _EYVALGSFFF_ ENSG00000118873|ENST00000358951|RAB3GAP2 6.2057823575117 0.44245551207394906 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114454.7 NaN 20794 4817 25609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25615 100.73 NaN 172750 35 0 25799 0.327 + 4654 EYNILVNFF 9 35 579.7950147695155 1157.575476605831 2 579.7950439453125 MULTI HCD FTMS 0 0 0 25614 48605.2734375 0.01879668751577097 33 -0.5527114868164062 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 5.731851221503515 0.3075653528928475 2 V 1 8 14.292 0 0 1.2346 0 0 426.19103745917783 629.2934054010374 1055.4844428602153 0 0 0 0 0 0.8807196863200843 0 0 0 + V 1.2346 + + 5 + NaN NaN 126114 NaN 20795 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25616 100.73 NaN 115390 35 0 8908.1 0.261 + 34763 YQFNTNVVF 9 45 566.2767182466217 1130.5388835600434 2 566.2960205078125 MULTI HCD FTMS 0 0 0 25614 16122.3486328125 0.46069000007701755 3 -0.06874847412109375 2 Unmodified _YQFNTNVVF_ ENSG00000169814|ENST00000643237|BTD;nc|ENSG00000169814|P43251-2|BTD;nc|ENSG00000169814|P43251-3|BTD;nc|ENSG00000169814|P43251|BTD 7.289230182591677 0.29575926068275815 2 V{M(Oxidation (M))|F} 2 7 19.464 0 0 1.7217 0 0 866.4390736310562 0 866.4390736310562 0 4.771212547196626 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.7217 + + 22 NaN NaN 115238.7 NaN 20796 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25617 100.74 NaN 97369 35 0 13872 0.261 + 24042 RWRMHKKKHKR 11 48 530.9852332657138 NaN 0 530.984619140625 PEAK HCD FTMS 0 0 0 25614 34127.7109375 0.6561598800019768 -15 0.2434844970703125 3 Unmodified _RWRMHKKKHKR_ REV__ENSG00000205857|ENST00000382119|NANOGNB 0 0.34212014346876374 2 {I|L}D{M(Oxidation (M))|F} 3 -1 11.682 0 0 1.1022 0 0 165.54462420396345 516.2101534479124 681.7547776518759 0 0 0 0 0 0 0 0 0 {I|L}D{M(Oxidation (M))|F} 1.1022 - 17 + NaN NaN 120651.2 NaN 20797 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25618 100.74 NaN 53500 35 0 5749 0.261 + -1 RMAQRLAEL 9 32 552.3030966218219 1102.5916403104436 2 552.3038330078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _RM(Oxidation (M))AQRLAEL_ REV__ENSG00000158106|ENST00000289013|RHPN1 9.38312468134398 0.279288223203164 2 {I|L}AE{I|L} 4 -1 38.928 0 0 3.5306 0 0 658.3327503888687 0 658.3327503888687 0 38.92790030352131 0 0 0 1 0 0 0 {I|L}AE{I|L} 3.5306 + + 8 NaN NaN 113307.2 NaN 20798 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25619 100.74 NaN 79345 35 0 21255 0.262 -1 MQCNCMMG 8 29 475.1393364315328 NaN 0 475.13934326171875 PEAK HCD FTMS 0 0 0 25614 18622.255859375 0.7214753712199535 17 -0.27460479736328125 5 2 Oxidation (M) _M(Oxidation (M))QCNCM(Oxidation (M))MG_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant 0.7936320650641473 0.38822285293237185 2 {I|L} 1 -1 3.0989 0 0 0.3268 0 0 605.0189244726375 227.13935266666252 832.1582771393 0 0 0 0 0 0 0 0 0 {I|L} 0.3268 - 4 + NaN NaN 117751.2 NaN 20799 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25620 100.75 NaN 43091 35 0 8118.8 0.261 -1 0 32 589.1040952090624 NaN 0 589.103515625 PEAK HCD FTMS 0 0 0 25614 6198.95361328125 0.16656708863018163 8 -0.13478851318359375 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95888.3 NaN 20800 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25621 100.75 NaN 41321 35 0 6066 0.261 + 33340 YFYPFPVPPL 10 30 620.3267211914062 NaN 0 620.3267211914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _YFYPFPVPPL_ ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1 12.531546534597751 0.32945902202414107 2 A 1 10 1.9897 0 0 0.16064 0 0 646.2731987287124 518.2969454400999 1164.5701441688122 0 0 0 0 0 0 0 0 0 A 0.16064 - 1 + NaN NaN 98773.9 NaN 20801 4818 25614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25623 100.76 NaN 129470 35 0 10540 0.327 + 29631 VAPIIFLTI 9 32 493.8177786377205 985.621004342241 2 493.81787109375 MULTI HCD FTMS 0 0 0 25622 51339.0625 0.1596965818408894 -30 0.5166244506835938 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 32.116972079565 0.101532291542178 2 {I|L}T{I|L} 3 -1 35.445 0 0 3.5962 0 0 640.3914662091812 0 640.3914662091812 0 22.25772496747986 0 0 0 0.5 0 0.4247425010840047 0 {I|L}T{I|L} 3.5962 + + 28 NaN NaN 107540.5 NaN 20802 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25624 100.76 NaN 381100 35 0 114750 0.261 -1 SRKKPYECTQ 10 43 432.885229636791 NaN 0 432.8851318359375 PEAK HCD FTMS 0 0 0 25622 155346.90625 0.7804830449744413 20 -0.2972259521484375 2 Carbamidomethyl (C) _SRKKPYEC(Carbamidomethyl (C))TQ_ ENSG00000198429|ENST00000429654|ZNF69 0.6268255596534771 0.33964781322640114 2 T 1 -1 4.6041 0 0 0.53303 0 0 184.33013837338825 575.3515719049436 759.6817102783318 0 0 0 0 0 0 0 0 0 T 0.53303 + + 3 + NaN NaN 149391.8 NaN 20803 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25625 100.76 NaN 368150 35 0 70836 0.261 -1 0 61 526.3724601135724 1050.7303672939447 2 526.3724975585938 MULTI HCD FTMS 0 0 0 25622 115507.0078125 0.6341570927651543 5 -0.07317352294921875 3 NaN NaN 2 Q{I|L}{I|L} 3 -1 13.2 0 0 1.2563 0 0 678.4997433383013 0 678.4997433383013 0 3.9081030098857656 0 0 0 0.4247425010840047 0 0 0 Q{I|L}{I|L} 1.2563 - 22 NaN NaN 153314.3 NaN 20804 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25626 100.77 NaN 121350 35 0 15836 0.261 -1 YFDCILDIL 9 30 586.2900594603063 1170.5655659874126 2 586.291015625 MULTI HCD FTMS 0 0 0 25622 25599.826171875 0.32854144474995867 -1 0.026153564453125 4 Carbamidomethyl (C) _YFDC(Carbamidomethyl (C))ILDIL_ ENST00000512062.5_1_16:69496731-69496797:+|nuORF 10.823927491677226 0.26684000660059787 2 D{I|L}{I|L}{I|L} 4 -1 41.186 0 0 3.5184 0 0 698.2774687985941 0 698.2774687985941 0 20.21652514092061 0 0 0 0.9247425010840047 0 0 0 D{I|L}{I|L}{I|L} 3.5184 - 16 NaN NaN 133533.2 NaN 20805 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25627 100.77 NaN 89069 35 0 23645 0.261 + -1 TVRRNQLKKM 10 33 645.3780979254149 NaN 0 645.37890625 PEAK HCD FTMS 0 0 0 25622 27743.67578125 0.6635654912508323 -5 0.09455108642578125 5 Oxidation (M) _TVRRNQLKKM(Oxidation (M))_ REV__ENSG00000169484|ENST00000641793|OR4K14 1.4819007175156935 0.33891598740166873 2 M 1 -1 6.9897 0 0 0.54237 0 0 680.3931454584484 474.2855623834594 1154.678707841908 0 0 0 0 0 0 0 0 0 M 0.54237 + + 5 + NaN NaN 109524.2 NaN 20806 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25628 100.77 NaN 58595 35 0 7124.9 0.264 + 1697 CGKKKRQI 8 35 480.7916773217458 959.5688017102916 2 480.79180908203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _CGKKKRQI_ ENST00000519593.1_1_7:27212405-27212492:-|nuORF 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 92760.4 NaN 20807 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25629 100.78 NaN 47841 35 0 7260.4 0.261 + 20114 NYIPRFWTF 9 36 622.3166698071988 NaN 0 622.3168334960938 PEAK HCD FTMS 0 0 0 25622 4654.5380859375 0.24194761288357572 -2 0.0424652099609375 7 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 8.745405648335112 0.25286782695573473 2 {I|L} 1 8 16.237 0 0 1.3067 0 0 852.4293468392037 274.0831698053344 1126.5125166445382 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.3067 + + 2 + NaN NaN 100705.5 NaN 20808 4819 25622 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25631 100.78 NaN 156070 35 0 22881 0.327 + 4655 EYNILVNFF 9 39 579.7950147695155 1157.575476605831 2 579.7938232421875 MULTI HCD FTMS 0 0 0 25630 33581.578125 0.012986706701974307 35 -0.5652084350585938 1 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 19.361941925380144 0.1930734562688509 2 VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 37.251 0 0 3.218 0 0 632.3146229474625 0 632.3146229474625 0 32.64645333192 0 0 0 0.8807196863200843 0 0 0 + VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.218 + + 19 NaN NaN 122100.1 NaN 20809 4820 25630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25632 100.79 NaN 90854 35 0 15026 0.261 + -1 LKTAGPVELLC 11 40 600.836160260213 1199.6577675872259 2 600.8186645507812 MULTI HCD FTMS 0 0 0 25630 24569.240234375 0.5894997084707682 5 -0.06275177001953125 2 Carbamidomethyl (C) _LKTAGPVELLC(Carbamidomethyl (C))_ REV__ENST00000427391.1_1_X:130964423-130964573:-|nuORF 2.498486711656943 0.4079631525365919 2 T{I|L}{I|L} 3 -1 14.693 0 0 1.2247 0 0 165.11785768895157 704.3046450285766 869.4225027175282 0 0 0 0 0 0 0 0 0 T{I|L}{I|L} 1.2247 - 28 + NaN NaN 106131 NaN 20810 4820 25630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25633 100.79 NaN 78558 35 0 17208 0.264 + 18950 NAHDSSFK 8 28 453.20950337943293 NaN 0 453.21014404296875 PEAK HCD FTMS 0 0 0 25630 32402.5703125 0.5855189436818007 -117 1.8289260864257812 3 Unmodified _NAHDSSFK_ ENST00000382361.7_1_7:5646078-5646261:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124319.1 NaN 20811 4820 25630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25634 100.79 NaN 66160 35 0 6524.1 0.261 + 25866 SMRQRLAEL 9 50 552.3030966218219 1102.5916403104436 2 552.292724609375 MULTI HCD FTMS 0 0 0 25630 16741.09765625 0.48413649380799273 9 -0.12105560302734375 4 Unmodified _SMRQRLAEL_ ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1 6.2057823575117 0.30397260197431997 2 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 4 6 9.6927 0 0 0.87909 0 0 640.3202992169937 0 640.3202992169937 0 4.208187539523751 0 0 0 0 0 0 0 {I|L}{[MS]|[{M(Oxidation (M))|F}A]}{I|L} 0.87909 - 7 NaN NaN 102178.7 NaN 20812 4820 25630 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25637 100.81 NaN 122360 35 0 20090 0.327 + 27396 SYTLLFAYF 9 39 562.7863632936807 1123.5581736541612 2 562.7867431640625 MULTI HCD FTMS 0 0 0 25636 30301.48828125 0.16662918295650714 -11 0.1964874267578125 1 Unmodified _SYTLLFAYF_ ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3 28.486842064014134 0.11819662193267319 2 {M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4 5 45.433 0 0 4.0437 0 0 577.3106787806043 0 577.3106787806043 0 40.828956512079344 0 0 0 1.5 0 0 0 + {M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4.0437 + + 28 NaN NaN 126513.3 NaN 20813 4822 25636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25638 100.81 NaN 146340 35 0 16092 0.261 + 19113 NFFPIAGLEF 10 35 577.7976514836943 1153.5807500341884 2 577.7982788085938 MULTI HCD FTMS 0 0 0 25636 12565.6513671875 0.16815993592705863 8 -0.1104736328125 2 Unmodified _NFFPIAGLEF_ ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2 16.149105407346934 0.3600587335443843 2 A[{I|L}P]N[{M(Oxidation (M))|F}E] 6 6 21.655 0 0 1.8772 0 0 464.2258473126969 0 464.2258473126969 0 21.655462488490684 0 0 0 1.3494850021680094 0 0 0 A[{I|L}P]N[{M(Oxidation (M))|F}E] 1.8772 - 33 NaN NaN 129485.5 NaN 20814 4822 25636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25639 100.81 NaN 102310 35 0 8880.8 0.261 + 317 AFSTIFSFF 9 53 533.7655818594711 1065.5166107857422 2 533.7659912109375 MULTI HCD FTMS 0 0 0 25636 21203.138671875 0.38676480710438327 -11 0.1964874267578125 3 Unmodified _AFSTIFSFF_ ENSG00000036565|ENST00000276373|SLC18A1;nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1 25.399314129420986 0.14091189997036632 2 S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 38.5 0 0 3.6133 0 0 666.3358770915413 0 666.3358770915413 0 19.916440611282624 0 0 0 1.2302046884880937 0 0 0 + S{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.6133 + + 47 NaN NaN 101216.3 NaN 20815 4822 25636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25640 100.82 NaN 72522 35 0 8868.8 0.261 + 29499 TYVPWPLML 9 35 560.2989702814878 1118.5833876297754 2 560.2997436523438 MULTI HCD FTMS 0 0 0 25636 13175.078125 0.2118460881471221 -11 0.1964874267578125 4 Unmodified _TYVPWPLML_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 15.847184025352803 0.2234401846867398 2 V[{M(Oxidation (M))|F}V] 3 7 13.952 0 0 1.2473 0 0 755.4041711764536 0 755.4041711764536 0 4.9730248405664685 0 0 0 0.5 0 0 0 V[{M(Oxidation (M))|F}V] 1.2473 - 15 + NaN NaN 119899.5 NaN 20816 4822 25636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25642 100.82 NaN 399990 35 0 119080 0.327 + 34446 YPETLVNLIVL 11 34 637.3736551363623 1272.7327573395246 2 637.3734741210938 MULTI HCD FTMS 0 0 0 25641 202225.265625 0.0966565831004748 23 -0.3561248779296875 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 12.872603262515298 0.344922997490724 2 {I|L}V{I|L} 3 8 31.198 0 0 2.4513 0 0 929.4833524101515 0 929.4833524101515 0 20.713337517843655 0 0 0 0.5 0 0 0 + {I|L}V{I|L} 2.4513 + + 5 NaN NaN 162190.3 NaN 20817 4823 25641 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25644 100.83 NaN 157020 35 0 30703 0.327 -1 KKCHQCVETI 10 49 434.88215491200685 NaN 0 434.88226318359375 PEAK HCD FTMS 0 0 0 25643 69526.0859375 0.4989390310646815 63 -0.94207763671875 1 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 N 1 -1 1.5938 0 0 0.18367 0 0 451.53211880663247 299.1490572565063 750.6811760631388 0 0 0 0 0 0 0 0 0 N 0.18367 - 1 + NaN NaN 128509.5 NaN 20818 4824 25643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25645 100.83 NaN 100200 35 0 7465.4 0.261 + 7091 FRGMVLLLL 9 56 531.3326088298186 NaN 0 531.31982421875 PEAK HCD FTMS 0 0 0 25643 5439.40771484375 0.1742552870653006 9 -0.1460113525390625 2 Unmodified _FRGMVLLLL_ ENSG00000187688|ENST00000338560|TRPV2 11.640296217721598 0.23883959125015683 2 {I|L}{I|L} 2 7 10.969 0 0 1.0342 0 0 132.15953451242802 699.3024996393186 831.4620341517466 0 0 0 0 0 0 0 0 0 + {I|L}{I|L} 1.0342 + + 23 + NaN NaN 99720.6 NaN 20819 4824 25643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25646 100.84 NaN 76951 35 0 7999.1 0.261 + -1 SSRCQRVF 8 42 541.2626210016978 NaN 0 541.272216796875 PEAK HCD FTMS 0 0 0 25643 5021.44677734375 0.478413988996768 3 -0.04510498046875 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))SSRC(Carbamidomethyl (C))QRVF_ REV__ENST00000536769.1_1_12:125398301-125398346:-|nuORF 10.823927491677226 0.38822285293237185 2 WV 2 -1 10.573 0 0 0.97854 0 0 630.2840177828892 162.05579553775627 792.3398133206455 0 0 0 0 0 0.5 0 0 0 WV 0.97854 - 7 + NaN NaN 117025.3 NaN 20820 4824 25643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25647 100.84 NaN 93750 35 0 15941 0.261 + 6268 FPFGCLLR 8 39 476.75798444279394 NaN 0 476.7579650878906 PEAK HCD FTMS 0 0 0 25643 12688.447265625 0.41074499761196426 2 -0.03546142578125 4 Unmodified _FPFGCLLR_ ENST00000498190.1_1_7:95216954-95218999:-|nuORF 0.7936320650641473 0.38822285293237185 2 C 1 7 0.48455 0 0 0.050925 0 0 522.4014536494567 323.07648645572505 845.4779401051817 0 0 0 0 0 0 0 0 0 + C 0.050925 + + 1 + NaN NaN 117338.8 NaN 20821 4824 25643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25649 100.85 NaN 240390 35 0 55573 0.327 + 32492 WFDPAIFTI 9 52 555.2866700487257 1108.5587871642513 2 555.2859497070312 MULTI HCD FTMS 0 0 0 25648 40109.2109375 0.22328517242957008 11 -0.1756591796875 1 Unmodified _WFDPAIFTI_ ENSG00000163655|ENST00000496455|GMPS 29.081581746732265 0.1154664336125038 2 {I|L}{M(Oxidation (M))|F}T{I|L} 4 5 34.24 0 0 3.0887 0 0 616.2655506818375 0 616.2655506818375 0 17.78659694992122 0 0 0 0.8807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}T{I|L} 3.0887 + + 85 NaN NaN 125256.5 NaN 20822 4825 25648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25650 100.85 NaN 219970 35 0 39727 0.261 + 19493 NQLTGHNLFF 10 48 595.8018062639553 1189.5890595947105 2 595.8018188476562 MULTI HCD FTMS 0 0 0 25648 38290.26171875 0.6695887793496053 8 -0.13016510009765625 2 Unmodified _NQLTGHNLFF_ SRR|p.R40H|1|0.47|ENSG00000167720|chr17:2315679-2315679|G/A|missense_variant 3.5964929083625545 0.45626689593999237 2 N[QA]{I|L} 4 7 16.198 0 0 1.3616 0 0 0 760.3315001233099 760.3315001233099 10.713337517843655 0 0 0 0 0 0 0 0 N[QA]{I|L} 1.3616 - 17 + NaN NaN 122930.8 NaN 20823 4825 25648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25651 100.85 NaN 79329 35 0 8676.5 0.261 + 13627 KYPENFFLL 9 32 585.8130197295411 1169.6114865258821 2 585.8132934570312 MULTI HCD FTMS 0 0 0 25648 32860.921875 0.5375203078162074 -29 0.48534393310546875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.682 0 0 2.7088 0 0 778.359666892775 0 778.359666892775 0 24.69273760456403 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.7088 + + 29 NaN NaN 124960.8 NaN 20824 4825 25648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25652 100.86 NaN 96477 35 0 7999.1 0.261 + -1 TYLYICLPM 9 44 566.7756400198858 1131.5367271065716 2 567.279052734375 MULTI HCD FTMS 0 0 0 25648 9317.943359375 0.2541032232443618 -79 1.289154052734375 4 Oxidation (M) _TYLYICLPM(Oxidation (M))_ REV__ENSG00000145283|ENST00000273905|SLC10A6 11.640296217721598 0.25978676193971967 2 [YT][RK][YE]SW 8 -1 + 34.671 0 0 3.064 3.064 88.217 0 0 0 11.712046717774527 4.737059521965108 4.737059521965108 26.58870936703728 0 0.8807196863200843 2 0 0 [YT][RK][YE]SW;[YN]S[YR][{I|L}V]A{M(Oxidation (M))|F} 3.064;0.71426 -;- 32 NaN NaN 113834.7 NaN 20825 4825 25648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25653 100.86 NaN 107610 35 0 25606 0.261 -1 0 31 615.4043052061404 614.3970287395404 1 617.87451171875 MULTI HCD FTMS 0 0 0 25648 28178.22265625 0.6473041128022394 -43 0.735809326171875 5 NaN NaN 2 C{M(Oxidation (M))|F} 2 -1 11.594 0 0 1.887 0 0 346.3242359845719 0 346.3242359845719 0 7.614393726401687 0 0 0 0 0 0 0 C{M(Oxidation (M))|F} 1.887 - 4 NaN NaN 100681.6 NaN 20826 4825 25648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25655 100.86 NaN 32631 35 0 5269.3 0.327 + 4773 EYVALGSFFF 10 28 590.2892028647134 1178.5638527962267 2 590.2907104492188 MULTI HCD FTMS 0 0 0 25654 21764.94140625 1 0 0 1 Unmodified _EYVALGSFFF_ ENSG00000118873|ENST00000358951|RAB3GAP2 13.042465956692817 0.38911719078024076 2 {I|L}[YQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 7 11.21 0 0 0.95117 0 0 462.2129749659517 0 462.2129749659517 0 9.61635608164464 0 0 0 0.7742275032520141 0 0 0 {I|L}[YQ]{M(Oxidation (M))|F}{M(Oxidation (M))|F} 0.95117 - 7 + NaN NaN 106516.4 NaN 20827 4826 25654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25656 100.87 NaN 58567 35 0 8715.8 0.261 + 17565 LYVLQVLTF 9 32 548.3258557632685 NaN 0 548.7764282226562 PEAK HCD FTMS 0 0 0 25654 12111.2890625 0.5202502679494682 7 -0.1105499267578125 2 Unmodified _LYVLQVLTF_ ENSG00000062598|ENST00000290246|ELMO2;ENSG00000155849|ENST00000310758|ELMO1;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;nc|ENSG00000062598|Q96JJ3-3|ELMO2 10.073929032068715 0.24642998803896465 2 V{I|L} 2 7 19.464 0 0 1.7781 0 0 616.3560439466556 263.1037691705688 879.4598131172245 0 0 0 0 0 1 0 0 0 + V{I|L} 1.7781 + + 11 + NaN NaN 115362 NaN 20828 4826 25654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25658 100.87 NaN 198390 35 0 21769 0.327 + 29632 VAPIIFLTI 9 44 493.8177786377205 985.621004342241 2 493.8179016113281 MULTI HCD FTMS 0 0 0 25657 73916.046875 0.22992511850266945 -22 0.3621978759765625 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 44.40701690623563 0.04511410083598184 2 {I|L}T{I|L} 3 -1 38.333 0 0 3.8892 0 0 640.3942738263687 0 640.3942738263687 0 27.078095681520566 0 0 0 0.7887254899964358 0 0.4247425010840047 0 {I|L}T{I|L} 3.8892 + + 23 NaN NaN 129859 NaN 20829 4827 25657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25659 100.88 NaN 160340 35 0 22984 0.261 + 4656 EYNILVNFF 9 43 579.7950147695155 1157.575476605831 2 579.7952880859375 MULTI HCD FTMS 0 0 0 25657 34358.515625 0.013287164869863498 42 -0.6833877563476562 2 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 16.149105407346934 0.22083165093524068 2 {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5 4 20.406 0 0 1.7628 0 0 519.2328385216498 0 519.2328385216498 0 18.18758762624412 0 0 0 1.1989700043360187 0 0 0 + {I|L}VN{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.7628 + + 20 + NaN NaN 106881 NaN 20830 4827 25657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25660 100.88 NaN 36313 35 0 4517.2 0.261 + 32404 VYYMIDVW 8 29 544.7575073242188 NaN 0 544.7575073242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VYYMIDVW_ REV__ENSG00000196557|ENST00000348261|CACNA1H;REV__nc|ENSG00000196557|O95180-2|CACNA1H 5.760428011301431 0.38822285293237185 2 G 1 -1 6.9897 0 0 0.64273 0 0 332.08957167793125 695.3613985650999 1027.4509702430312 0 0 0 0 0 0 0 0 0 G 0.64273 - 4 + NaN NaN 106954.4 NaN 20831 4827 25657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25661 100.89 NaN 50277 35 0 6462.2 0.261 + -1 RTPRKFCM 8 39 556.2785615013299 1110.5425700694598 2 557.2841796875 MULTI HCD FTMS 0 0 0 25657 10599.4638671875 0.671153679792475 -7 0.092010498046875 4 Carbamidomethyl (C),Oxidation (M) _RTPRKFC(Carbamidomethyl (C))M(Oxidation (M))_ REV__nc|ENSG00000069869|P46934-2|NEDD4;REV__nc|ENSG00000069869|P46934-3|NEDD4;REV__nc|ENSG00000069869|P46934|NEDD4 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 106734.2 NaN 20832 4827 25657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25663 100.89 NaN 212590 35 0 40277 0.327 + -1 KFYTMLIL 8 44 522.7936235362844 NaN 0 522.803955078125 PEAK HCD FTMS 0 0 0 25662 4588.73828125 0.9203848644832816 -1 0.01609039306640625 1 Oxidation (M) _KFYTM(Oxidation (M))LIL_ REV__ENSG00000196932|ENST00000399298|TMEM26;REV__ENST00000507507.1_1_10:63170082-63173364:-|nuORF 2.8892196856762586 0.38822285293237185 2 {I|L}{I|L} 2 -1 10.969 0 0 1.0511 0 0 131.07395366284533 683.3076376160265 814.3815912788718 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.0511 + + 4 + NaN NaN 125593 NaN 20833 4828 25662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25664 100.89 NaN 171460 35 0 55782 0.261 -1 VQRCREIF 8 34 554.2892915688872 1106.5640302045742 2 554.2896728515625 MULTI HCD FTMS 0 0 0 25662 70024.3359375 0.651394426219572 -1 0.01609039306640625 2 Carbamidomethyl (C) _VQRC(Carbamidomethyl (C))REIF_ ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41973324-41980100:-|nuORF 21.74664581756881 0.4337896562907935 2 E{I|L}{M(Oxidation (M))|F} 3 -1 43.188 0 0 3.9029 0 0 699.3584770813305 0 699.3584770813305 0 43.187587626244124 0 0 0 1.5 0 0.3494850021680094 0 E{I|L}{M(Oxidation (M))|F} 3.9029 + + 14 + NaN NaN 134759.9 NaN 20834 4828 25662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25665 100.9 NaN 74562 35 0 6983 0.261 + 30799 VPTLVEELI 9 37 506.79985180803493 1011.5851506828699 2 506.8000183105469 MULTI HCD FTMS 0 0 0 25662 9950.6142578125 0.13026710010668438 8 -0.13031005859375 3 Unmodified _VPTLVEELI_ ENSG00000004838|ENST00000231749|ZMYND10;ENST00000478269.5_1_3:50380731-50381380:-|nuORF;nc|ENSG00000004838|O75800-2|ZMYND10 3.944395688203298 0.32111559684428237 2 E{I|L}{I|L} 3 6 26.198 0 0 2.5898 0 0 638.3638172834 0 638.3638172834 0 26.197887582883936 0 0 0 0 0 0 0 + E{I|L}{I|L} 2.5898 + + 4 NaN NaN 109199.9 NaN 20835 4828 25662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25667 100.9 NaN 131980 35 0 18846 0.327 -1 FNLQKMMVM 9 39 579.2776397062809 NaN 0 579.292724609375 PEAK HCD FTMS 0 0 0 25666 5483.1376953125 1 0 0 1 Oxidation (M) _FNLQKMMVM(Oxidation (M))_ ENSG00000127463|ENST00000477853|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-4|EMC1 4.75600775471527 0.27219989241163056 2 {M(Oxidation (M))|F}NV{I|L} 4 -1 17.713 0 0 1.5315 0 0 164.03860353189913 516.2102144830686 680.2488180149678 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}NV{I|L} 1.5315 - 20 + NaN NaN 110751.1 NaN 20836 4829 25666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25668 100.91 NaN 77929 35 0 7633.3 0.261 + 6988 FPVVEFLTL 9 35 532.8049195115594 1063.5952860899188 2 532.8052368164062 MULTI HCD FTMS 0 0 0 25666 70111.8125 0.5749709753543102 -4 0.0583038330078125 2 Unmodified _FPVVEFLTL_ ENSG00000169180|ENST00000304658|XPO6;nc|ENSG00000169180|Q96QU8-2|XPO6 14.838274106304384 0.23215694253501695 2 ET{I|L} 3 6 35.005 0 0 3.2912 0 0 702.3953724591812 0 702.3953724591812 0 8.807196863200843 0 0 0 0.5 0 0.3807196863200844 0 ET{I|L} 3.2912 - 18 NaN NaN 101826.1 NaN 20837 4829 25666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25669 100.91 NaN 50335 35 0 13665 0.261 + 32512 WGGSPGSWLSE 11 32 581.7601716314537 1161.5057903297072 2 582.2620849609375 MULTI HCD FTMS 0 0 0 25666 15753.9140625 0.7191545827626061 -1 0.0129547119140625 3 Unmodified _WGGSPGSWLSE_ ENST00000466883.5_1_7:65439694-65439883:-|nuORF 2.735195868890462 0.4069250265843076 2 {I|L} 1 10 0.9691 0 0 0.083435 0 0 645.7492728509948 399.6607760065063 1045.4100488575011 0 0 0 0 0 0 0 0 0 + {I|L} 0.083435 + + 1 + NaN NaN 97072.2 NaN 20838 4829 25666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25671 100.92 NaN 92014 35 0 7086.8 0.327 -1 YFDCILDIL 9 42 586.2900594603063 1170.5655659874126 2 586.2909545898438 MULTI HCD FTMS 0 0 0 25670 21838.5234375 0.2802698734433078 10 -0.15665435791015625 1 Carbamidomethyl (C) _YFDC(Carbamidomethyl (C))ILDIL_ ENST00000512062.5_1_16:69496731-69496797:+|nuORF 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}N{I|L} 3 -1 24.693 0 0 2.1095 0 0 778.3635121076187 0 778.3635121076187 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F}N{I|L} 2.1095 - 64 NaN NaN 109242.5 NaN 20839 4830 25670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25672 100.92 NaN 215440 35 0 17109 0.261 + 29161 TYIPPLLVAF 10 55 567.3338459008424 1132.6531388684848 2 567.3335571289062 MULTI HCD FTMS 0 0 0 25670 37998.8046875 0.17271896901713424 -10 0.13401031494140625 2 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 43.85829265575387 0.11192494793849486 2 {I|L}VA{M(Oxidation (M))|F} 4 6 39.513 0 0 3.4886 0 0 684.3851450792778 0 684.3851450792778 0 21.070006276765483 0 0 0 1.6861818737241734 0 0 0 + {I|L}VA{M(Oxidation (M))|F} 3.4886 + + 94 NaN NaN 125360.5 NaN 20840 4830 25670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25673 100.92 NaN 77757 35 0 16755 0.263 + 20540 PDYLGGHF 8 33 453.20950337943293 NaN 0 453.2098388671875 PEAK HCD FTMS 0 0 0 25670 26712.59375 0.48270027731310305 -107 1.7108917236328125 3 Unmodified _PDYLGGHF_ REV__chr5:167755192-167875986|342|11.18|0.1|6.82|+|ENST00000519204|TENM2,TENM2;REV__ENSG00000145934|ENST00000518659|TENM2;REV__ENSG00000218336|ENST00000511685|TENM3;REV__nc|ENSG00000145934|Q9NT68-2|TENM2 0.7936320650641473 0.38822285293237185 2 S 1 -1 2.7642 0 0 0.30564 0 0 364.5908074407034 449.75400720767817 814.3448146483815 0 0 0 0 0 0 0 0 0 S 0.30564 - 1 + NaN NaN 99639.5 NaN 20841 4830 25670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25674 100.93 NaN 68422 35 0 9589.5 0.261 + -1 LCMCLAHLDC 10 36 589.7443396206038 NaN 0 589.7443237304688 PEAK HCD FTMS 0 0 0 25670 11426.896484375 0.5151578095761044 1 -0.0196380615234375 4 Carbamidomethyl (C) _LCMCLAHLDC(Carbamidomethyl (C))_ REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF 1.6526216038709556 0.33876987398426067 2 K 1 -1 4.6041 0 0 0.39101 0 0 478.10963763788874 568.2336519830686 1046.3432896209574 0 0 0 0 0 0 0 0 0 K 0.39101 - 1 + NaN NaN 104456.6 NaN 20842 4830 25670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25675 100.93 NaN 42003 35 0 6534.8 0.261 -1 0 26 623.0900866657636 NaN 0 622.8155517578125 PEAK HCD FTMS 0 0 0 25670 5345.24365234375 0.9606533530851092 -1 0.0129547119140625 5 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.44082 0 0 853.9759058981302 274.0848482721313 1128.0607541702616 0 0 0 0 0 0 0 0 0 {I|L} 0.44082 - 5 + NaN NaN 101206.8 NaN 20843 4830 25670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25677 100.94 NaN 331160 35 0 65797 0.327 + 27397 SYTLLFAYF 9 47 562.7863632936807 1123.5581736541612 2 562.7866821289062 MULTI HCD FTMS 0 0 0 25676 103885.359375 0.5712700443334554 -2 0.0325927734375 1 Unmodified _SYTLLFAYF_ ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3 50.855029805455786 0.030374663808198754 2 {I|L}{M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 5 4 52.563 0 0 4.6783 0 0 464.22764784980626 0 464.22764784980626 0 25.651668842475033 0 0 0 2 0 0 0 + {I|L}{M(Oxidation (M))|F}AY{M(Oxidation (M))|F} 4.6783 + + 53 NaN NaN 156861 NaN 20844 4831 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25678 100.94 NaN 92250 35 0 19588 0.261 + 14694 LGYNLFLLTF 10 30 600.836160260213 1199.6577675872259 2 600.8180541992188 MULTI HCD FTMS 0 0 0 25676 10418.5791015625 0.24997717814886952 15 -0.241851806640625 2 Unmodified _LGYNLFLLTF_ REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF 3.2813086475875832 0.45793521633868084 2 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 8 -1 16.375 0 0 1.365 0 0 165.11584971788835 0 165.11584971788835 0 12.395775165767876 0 0 0 0 0 0 0 T{M(Oxidation (M))|F}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}{I|L}{I|L}[{M(Oxidation (M))|F}T] 1.365 - 23 + NaN NaN 120263 NaN 20845 4831 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25679 100.94 NaN 113030 35 0 9024.8 0.262 + 690 APVYPQIIN 9 51 507.78537166228216 1013.5561903913643 2 507.7855529785156 MULTI HCD FTMS 0 0 0 25676 30152.6171875 0.2643032325988425 -2 0.0325927734375 3 Unmodified _APVYPQIIN_ ENSG00000140836|ENST00000268489|ZFHX3 15.847184025352803 0.2234401846867398 2 APVS 4 6 39.923 0 0 3.9389 0 0 0 656.3454073541624 656.3454073541624 18.953650195120844 0 0 0 0 1.25 0 0 0 APVS 3.9389 - 46 + NaN NaN 113909.9 NaN 20846 4831 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25680 100.95 NaN 79322 35 0 7919.3 0.261 -1 ACENMCVCL 9 37 550.2064402086908 NaN 0 549.8059692382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _AC(Carbamidomethyl (C))ENMC(Carbamidomethyl (C))VCL_ ENST00000537498.1_1_16:89114163-89119334:-|nuORF 2.302733041254933 0.2840881193086663 2 {I|L} 1 -1 5.4846 0 0 0.49932 0 0 765.2297616656252 217.05401025943596 982.2837719250612 0 0 0 0 0 0 0 0 0 {I|L} 0.49932 + + 4 + NaN NaN 115358.7 NaN 20847 4831 25676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25682 100.95 NaN 274460 35 0 13373 0.327 + -1 LLKCLRHFLTL 11 67 471.951738569818 1412.833386309654 3 472.286376953125 MULTI HCD FTMS 0 0 0 25681 106535.5390625 0.8936113229023899 -3 0.04888153076171875 1 Carbamidomethyl (C) _LLKC(Carbamidomethyl (C))LRHFLTL_ REV__ENSG00000134899|ENST00000652225|ERCC5;REV__ENST00000375958.3_1_13:103498616-103506268:+|nuORF;REV__nc|ENSG00000134899|P28715-3|ERCC5 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 131928.6 NaN 20848 4832 25681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25683 100.96 NaN 190810 35 0 47210 0.261 + 34447 YPETLVNLIVL 11 30 637.3736551363623 1272.7327573395246 2 637.373291015625 MULTI HCD FTMS 0 0 0 25681 82462.4140625 0.039414141219515544 32 -0.5207443237304688 2 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 9.5439744041441 0.373925449867384 2 {I|L}V{I|L} 3 8 30.445 0 0 2.3921 0 0 929.4830189435562 0 929.4830189435562 0 30.445312593723983 0 0 0 0.4247425010840047 0 0 0 + {I|L}V{I|L} 2.3921 + + 5 NaN NaN 111091.2 NaN 20849 4832 25681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25684 100.96 NaN 151120 35 0 23609 0.261 + 2177 DIELASLLVF 10 44 560.3179976813268 NaN 0 560.2991943359375 PEAK HCD FTMS 0 0 0 25681 5147.650390625 0.7088238394865567 -1 0.01628875732421875 3 Unmodified _DIELASLLVF_ ENSG00000197943|ENST00000564138|PLCG2 6.723162845929126 0.3344301934401713 2 MP{I|L} 3 9 11.682 0 0 1.0444 0 0 131.13732485308475 643.2874419287443 774.424766781829 0 0 0 0 0 0 0 0 0 MP{I|L} 1.0444 - 67 + NaN NaN 129575.2 NaN 20850 4832 25681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25685 100.96 NaN 158790 35 0 25761 0.261 + 34651 YPSLIWEVF 9 44 577.2990335431181 1152.583514153036 2 577.2992553710938 MULTI HCD FTMS 0 0 0 25681 30393.783203125 0.41990137012855744 3 -0.05224609375 4 Unmodified _YPSLIWEVF_ ENSG00000168398|ENST00000554311|BDKRB2;nc|ENSG00000168398|P30411-2|BDKRB2 21.74664581756881 0.17247014374749275 2 EV{M(Oxidation (M))|F} 3 6 38.698 0 0 3.3575 0 0 759.3948841779312 0 759.3948841779312 0 36.90228147639203 0 0 0 1.25 0 0 0 + EV{M(Oxidation (M))|F} 3.3575 + + 22 NaN NaN 118115.7 NaN 20851 4832 25681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25686 100.97 NaN 44524 35 0 6306.4 0.261 + 32594 WKRRPGWK 8 31 557.325630729266 1112.6367085253319 2 557.3260498046875 MULTI HCD FTMS 0 0 0 25681 5239.0400390625 0.22028558575160706 -14 0.22235870361328125 5 Unmodified _WKRRPGWK_ ENST00000286201.2_1_2:202901244-202901346:+|nuORF 0.6903765706972694 0.5409681170271811 2 S 1 8 5.4846 0 0 0.49293 0 0 812.5049774235725 210.07570825748283 1022.5806856810553 0 0 0 0 0 0 0 0 0 S 0.49293 - 2 + NaN NaN 91928.5 NaN 20852 4832 25681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25687 100.97 NaN 43409 35 0 5897.1 0.261 + 21812 QAQARHLLF 9 38 542.3077269559757 NaN 0 542.3084716796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _QAQARHLLF_ REV__ENSG00000160801|ENST00000449590|PTH1R 2.0597508629832335 0.2852655770354268 2 P 1 -1 1.5938 0 0 0.14722 0 0 462.8028185586325 519.7260225885374 982.5288411471699 0 0 0 0 0 0 0 0 0 P 0.14722 - 1 + NaN NaN 109674.7 NaN 20853 4832 25681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25689 100.98 NaN 117960 35 0 7878.7 0.327 + 5129 FERRRELRRQK 11 52 525.3096901757092 1572.9072411273273 3 525.309814453125 MULTI HCD FTMS 0 0 0 25688 95939.2890625 1 0 0 1 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 2 K 1 10 0.9691 0 0 0.061612 0 0 1158.6614048009585 283.1189058893188 1441.7803106902772 0 0 0 0 0 0 0 0 0 + K 0.061612 + + 4 + NaN NaN 120690.5 NaN 20854 4833 25688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25690 100.98 NaN 86087 35 0 13638 0.261 + 30417 VLPDMFFSF 9 40 551.7673130566458 1101.5200731800915 2 551.76806640625 MULTI HCD FTMS 0 0 0 25688 17864.599609375 0.3728525871027146 -1 0.022979736328125 2 Unmodified _VLPDMFFSF_ ENSG00000103067|ENST00000473183|ESRP2;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;nc|ENSG00000103067|Q9H6T0|ESRP2 25.399314129420986 0.14091189997036632 2 {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 3 6 30.19 0 0 2.7407 0 0 702.3416601942407 0 702.3416601942407 0 13.99166239860314 0 0 0 1.1237125054200234 0 0.8494850021680094 0 + {M(Oxidation (M))|F}S{M(Oxidation (M))|F} 2.7407 + + 31 + NaN NaN 110026.9 NaN 20855 4833 25688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25691 100.98 NaN 44671 35 0 4722.7 0.261 + 6698 FPNSDLLAPL 10 36 543.7958796717579 1085.5772064103157 2 543.797119140625 MULTI HCD FTMS 0 0 0 25688 27426.951171875 1 0 0 3 Unmodified _FPNSDLLAPL_ REV__ENSG00000105538|ENST00000222145|RASIP1;REV__ENST00000601530.1_1_19:49224057-49228265:-|nuORF 2.9952420565917617 0.4594494122822477 2 PE 2 -1 20.969 0 0 1.9316 0 0 841.454393455275 0 841.454393455275 0 20.969100130080562 0 0 0 0 0 0 0 PE 1.9316 - 1 NaN NaN 108100.1 NaN 20856 4833 25688 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25693 100.99 NaN 744750 35 0 180970 0.327 -1 0 43 497.295624340295 992.57669574739 2 497.2957763671875 MULTI HCD FTMS 0 0 0 25692 518178.15625 0.9144670053560872 1 -0.0162811279296875 1 NaN NaN 2 V{I|L}{M(Oxidation (M))|F}[QA]{[{M(Oxidation (M))|F}H]|[RQ]} 7 -1 19.041 0 0 1.9183 0 0 132.09805283850295 0 132.09805283850295 0 8.583041560618694 0 0 0 0.3054621874040891 0 0 0 V{I|L}{M(Oxidation (M))|F}[QA]{[{M(Oxidation (M))|F}H]|[RQ]} 1.9183 - 41 + NaN NaN 213865.2 NaN 20857 4834 25692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25694 100.99 NaN 166380 35 0 55729 0.261 + 19558 NSSGRGEH 8 43 422.1886024869599 842.3626520407198 2 422.1886901855469 MULTI HCD FTMS 0 0 0 25692 95259.96875 0.43668463265887325 -9 0.14315032958984375 2 Unmodified _NSSGRGEH_ REV__ENST00000526120.5_2_11:17290822-17304375:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 15.044 0 0 1.786 0 0 155.09538119283883 571.1613961644368 726.2567773572757 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.786 - 3 + NaN NaN 118816.9 NaN 20858 4834 25692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25695 101 NaN 45612 35 0 3628.4 0.261 + 29899 VFDLVELEVL 10 37 588.3317841795827 NaN 0 588.2904052734375 PEAK HCD FTMS 0 0 0 25692 13741.4853515625 0.5786939355435592 -6 0.09780120849609375 3 Unmodified _VFDLVELEVL_ ENSG00000136802|ENST00000372600|LRRC8A 21.536976647645854 0.26818477760186155 2 VE{I|L} 3 7 25.93 0 0 2.2075 0 0 131.0886649394402 699.3352955404558 830.4239604798961 0 0 0 0 0 1.274227503252014 0 0 0 + VE{I|L} 2.2075 + + 37 + NaN NaN 122397 NaN 20859 4834 25692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25696 101 NaN 66777 35 0 6626.4 0.261 + 1611 AYVPLQFLF 9 39 549.3051549948595 NaN 0 549.3045043945312 PEAK HCD FTMS 0 0 0 25692 21470.83203125 1 0 0 4 Unmodified _AYVPLQFLF_ ENST00000340022.6_2_7:91874335-91874845:-|nuORF;ENST00000394507.5_2_7:91874335-91874458:-|nuORF 11.640296217721598 0.23883959125015683 2 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.36289 0 0 489.62946174577525 456.9196871393188 946.549148885094 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.36289 + + 1 + NaN NaN 109394.3 NaN 20860 4834 25692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25698 101 NaN 231650 35 0 24740 0.327 + 29633 VAPIIFLTI 9 52 493.8177786377205 985.621004342241 2 493.8180236816406 MULTI HCD FTMS 0 0 0 25697 63821.9609375 0.19852620035867452 -14 0.2058563232421875 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 53.57557251787612 0.02656881086235134 2 D{I|L}T{I|L} 4 -1 39.847 0 0 4.0429 0 0 525.3794422834 0 525.3794422834 0 27.368055416408993 0 0 0 0.7887254899964358 0 0.4247425010840047 0 D{I|L}T{I|L} 4.0429 - 47 NaN NaN 123721.8 NaN 20861 4835 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25699 101.01 NaN 174120 35 0 18545 0.261 -1 0 44 504.8089821333732 1007.6034113335464 2 504.8091735839844 MULTI HCD FTMS 0 0 0 25697 9956.4912109375 0.2578863473997444 6 -0.0814361572265625 2 NaN NaN 2 {I|L}PV 3 -1 23.188 0 0 2.3013 0 0 0 695.3837374322874 695.3837374322874 16.197887582883936 0 0 0 0 0 0 0 0 {I|L}PV 2.3013 - 5 + NaN NaN 116258.5 NaN 20862 4835 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25700 101.01 NaN 70692 35 0 31035 0.261 + 62 ACFKKKKL 8 31 483.30289125538707 NaN 0 483.3027648925781 PEAK HCD FTMS 0 0 0 25697 14020.2744140625 0.2785941474888813 2 -0.0234527587890625 3 Unmodified _ACFKKKKL_ RPL6|p.Y216C|1|0.39|ENSG00000089009|chr12:112405920-112405920|T/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118285.9 NaN 20863 4835 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25701 101.02 NaN 56704 35 0 9017.7 0.261 + 10529 IPFFPDLQI 9 30 545.3027542654212 1088.5909555976423 2 545.302734375 MULTI HCD FTMS 0 0 0 25697 19150.9765625 0.3613812634431191 -10 0.15943145751953125 4 Unmodified _IPFFPDLQI_ ENSG00000175745|ENST00000327111|NR2F1;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2 9.38312468134398 0.279288223203164 2 {I|L}Q{I|L} 3 6 23.188 0 0 2.1301 0 0 716.363084861525 0 716.363084861525 0 23.187587626244124 0 0 0 0 0 0 0 + {I|L}Q{I|L} 2.1301 + + 4 NaN NaN 109600.7 NaN 20864 4835 25697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25704 101.03 NaN 193730 35 0 19021 0.327 + 6989 FPVVEFLTL 9 50 532.8049195115594 1063.5952860899188 2 532.8048706054688 MULTI HCD FTMS 0 0 0 25703 30336.66015625 0.24878402735674965 4 -0.0579833984375 1 Unmodified _FPVVEFLTL_ ENSG00000169180|ENST00000304658|XPO6;nc|ENSG00000169180|Q96QU8-2|XPO6 61.357469665136826 0.01568246967499496 2 E{M(Oxidation (M))|F}{I|L}T{I|L} 5 4 56.81 0 0 5.3413 0 0 442.25731093574376 0 442.25731093574376 0 21.760912590556813 0 0 0 1.805462187404089 0 0.3807196863200844 0 + E{M(Oxidation (M))|F}{I|L}T{I|L} 5.3413 + + 84 NaN NaN 122293.5 NaN 20865 4837 25703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25705 101.03 NaN 140410 35 0 22704 0.261 -1 0 44 579.2929766229878 578.2857001563877 1 579.29296875 MULTI HCD FTMS 0 0 0 25703 21089.658203125 0.43773992700811004 -15 0.22209930419921875 2 NaN NaN 2 [YT]{I|L} 3 -1 17.024 0 0 2.9439 0 0 0 198.06799320742212 198.06799320742212 9.577118610328348 0 0 0 0 0 1.5228787452803376 0 0 [YT]{I|L} 2.9439 - 11 NaN NaN 127012.5 NaN 20866 4837 25703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25707 101.04 NaN 219610 35 0 71089 0.327 + 7300 FTPVITIVL 9 39 501.8152576901558 1001.6159624471117 2 501.8153076171875 MULTI HCD FTMS 0 0 0 25706 73001.109375 0.0255712963320547 -11 0.16294097900390625 1 Unmodified _FTPVITIVL_ ENST00000379565.7_1_X:20168583-20168808:-|nuORF 26.88365393820708 0.12808753336095696 2 T{I|L}V{I|L} 4 5 45.745 0 0 4.5672 0 0 557.3203389854343 0 557.3203389854343 0 42.981187280073065 0 0 0 1 0 0.3807196863200844 0 + T{I|L}V{I|L} 4.5672 + + 13 NaN NaN 117952.1 NaN 20867 4838 25706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25708 101.04 NaN 49878 35 0 6475.3 0.261 + 33206 YFDLPAGLMA 10 28 549.2696917917779 NaN 0 549.2698974609375 PEAK HCD FTMS 0 0 0 25706 12955.1953125 0.9330741624775069 1 -0.0160064697265625 2 Unmodified _YFDLPAGLMA_ ENSG00000085872|ENST00000546361|CHERP 1.844237919475145 0.33860587697544825 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93453.7 NaN 20868 4838 25706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25709 101.04 NaN 14502 35 0 5091.4 0.261 + 21243 PRKDYWDFL 9 12 620.3111572265625 NaN 0 620.3111572265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PRKDYWDFL_ ENSG00000188282|ENST00000697321|RUFY4;nc|ENSG00000188282|Q6ZNE9-3|RUFY4 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96934.1 NaN 20869 4838 25706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25710 101.05 NaN 23078 35 0 3558.2 0.261 + 1803 CPEELNTRAKK 11 21 644.8358764648438 NaN 0 644.8358764648438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _CPEELNTRAKK_ REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP 1.3295316138638542 0.3383486451652214 2 V 1 -1 4.6041 0 0 0.35783 0 0 634.3666561505873 550.1943453424436 1184.561001493031 0 0 0 0 0 0 0 0 0 V 0.35783 - 1 + NaN NaN 115693.4 NaN 20870 4838 25706 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25712 101.05 NaN 316790 35 0 34743 0.327 + 29162 TYIPPLLVAF 10 45 567.3338459008424 1132.6531388684848 2 567.3340454101562 MULTI HCD FTMS 0 0 0 25711 99475.4140625 0.4521534585291693 -1 0.0160064697265625 1 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 49.93300154707207 0.07803319134556608 2 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 + 79.927 0 0 7.0566 7.0566 95.575 0 0 0 25.764837301042718 63.72872192056825 25.764837301042718 79.92660950345218 0 2.2302046884880937 2 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 7.0566 + + 79 NaN NaN 145159.5 NaN 20871 4839 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25713 101.06 NaN 295070 35 0 77398 0.264 -1 SRKKPYECTQ 10 40 432.885229636791 NaN 0 432.8852233886719 PEAK HCD FTMS 0 0 0 25711 142909.734375 0.7179970772123991 40 -0.6299362182617188 2 Carbamidomethyl (C) _SRKKPYEC(Carbamidomethyl (C))TQ_ ENSG00000198429|ENST00000429654|ZNF69 0.6268255596534771 0.33964781322640114 2 T 1 -1 2.2185 0 0 0.25684 0 0 595.6473075628414 164.0384462945922 759.6857538574336 0 0 0 0 0 0 0 0 0 T 0.25684 + + 1 + NaN NaN 135874.2 NaN 20872 4839 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25714 101.06 NaN 74602 35 0 8108.8 0.261 + 13628 KYPENFFLL 9 36 585.8130197295411 1169.6114865258821 2 585.8135375976562 MULTI HCD FTMS 0 0 0 25711 17576.58203125 0.28750775220892427 -15 0.22405242919921875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 35.445 0 0 3.0305 0 0 778.3663197248062 0 778.3663197248062 0 28.455612550363796 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0305 + + 28 NaN NaN 107387.3 NaN 20873 4839 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25715 101.06 NaN 65545 35 0 11863 0.263 + 23871 RSREASWNTSY 11 34 452.88049112897636 NaN 0 452.8696594238281 PEAK HCD FTMS 0 0 0 25711 5202.24560546875 0.19023647305381225 32 -0.5303802490234375 4 Unmodified _RSREASWNTSY_ REV__ENSG00000099250|ENST00000374867|NRP1;REV__nc|ENSG00000099250|O14786-2|NRP1;REV__nc|ENSG00000099250|O14786-3|NRP1 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98724.6 NaN 20874 4839 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25716 101.07 NaN 49615 35 0 5569.6 0.261 + 7332 FVAPKVNPKN 10 40 557.325630729266 1112.6367085253319 2 557.3240356445312 MULTI HCD FTMS 0 0 0 25711 21000.521484375 0.8830076009693133 -7 0.10102081298828125 5 Unmodified _FVAPKVNPKN_ ENST00000505555.5_1_5:218470-251793:+|nuORF 1.844237919475145 0.46554186016084764 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 120554.9 NaN 20875 4839 25711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25718 101.07 NaN 264620 35 0 23487 0.327 + 27398 SYTLLFAYF 9 55 562.7863632936807 1123.5581736541612 2 562.7864379882812 MULTI HCD FTMS 0 0 0 25717 88636.578125 0.4874163425883084 7 -0.12445068359375 1 Unmodified _SYTLLFAYF_ ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3 34.10243960390752 0.09241788333544565 2 [YN]{I|L}DW{I|L}T 7 7 71.335 0 0 6.3491 0 0 0 215.10321985416252 215.10321985416252 30.417885138426897 0 0 0 0 2.6861818737241734 1.3979400086720375 0.6549471895720984 0 [YN]{I|L}DW{I|L}T 6.3491 - 265 + NaN NaN 130047.8 NaN 20876 4840 25717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25719 101.08 NaN 135160 35 0 18170 0.261 + 4657 EYNILVNFF 9 42 579.7950147695155 1157.575476605831 2 579.7957763671875 MULTI HCD FTMS 0 0 0 25717 21256.599609375 0.00822037676671143 55 -0.778564453125 2 Unmodified _EYNILVNFF_ ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF 21.536976647645854 0.1742816388551942 2 V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 4 5 25.005 0 0 2.1601 0 0 632.3141346662125 0 632.3141346662125 0 21.510234424404686 0 0 0 0.8807196863200843 0 0 0 + V{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 2.1601 + + 18 NaN NaN 113738.9 NaN 20877 4840 25717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25720 101.08 NaN 95033 35 0 8698.2 0.261 -1 MKCSEKGFQG 10 37 586.2638595061801 1170.51316607916 2 586.7664184570312 MULTI HCD FTMS 0 0 0 25717 28429.333984375 0.48136646147598394 6 -0.10483551025390625 3 Carbamidomethyl (C) _MKC(Carbamidomethyl (C))SEKGFQG_ ENSG00000140873|ENST00000282849|ADAMTS18 5.296884461304476 0.4472664531305844 2 SA{I|L}{M(Oxidation (M))|F}W 5 -1 30.969 0 0 2.6458 0 0 548.2026107552823 0 548.2026107552823 0 11.505149978319906 0 0 0 0 0 0 0 SA{I|L}{M(Oxidation (M))|F}W 2.6458 - 57 + NaN NaN 106968.1 NaN 20878 4840 25717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25722 101.09 NaN 236760 35 0 63678 0.327 + 34448 YPETLVNLIVL 11 32 637.3736551363623 1272.7327573395246 2 637.372802734375 MULTI HCD FTMS 0 0 0 25721 52177.5234375 0.024939025865669154 41 -0.6363601684570312 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 12.872603262515298 0.344922997490724 2 V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{I|L} 6 5 35.278 0 0 2.7718 0 0 603.2914906232437 0 603.2914906232437 0 35.27819381628923 0 0 0 0.9247425010840047 0 0 0 + V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{I|L} 2.7718 + + 9 NaN NaN 125052.5 NaN 20879 4841 25721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25723 101.09 NaN 43823 35 0 5441.1 0.261 + -1 DMLSSCSCRK 10 33 601.7530477232721 1201.491542513344 2 601.7532958984375 MULTI HCD FTMS 0 0 0 25721 4776.943359375 0.20266393663362398 1 -0.01302337646484375 2 Carbamidomethyl (C),Oxidation (M) _DM(Oxidation (M))LSSC(Carbamidomethyl (C))SCRK_ REV__ENSG00000078401|ENST00000379375|EDN1 2.735195868890462 0.4608258780945842 2 {I|L} 1 -1 5.4846 0 0 0.45648 0 0 266.9894195658815 818.3942354791624 1085.383655045044 0 0 0 0 0 0 0 0 0 {I|L} 0.45648 + + 5 + NaN NaN 93481.6 NaN 20880 4841 25721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25724 101.09 NaN 85165 35 0 6522.5 0.262 + -1 SLKCSPLPI 9 38 507.7851899988589 1013.5558270645179 2 507.7850036621094 MULTI HCD FTMS 0 0 0 25721 17143.37890625 0.3675957130215442 -2 0.03266143798828125 3 Carbamidomethyl (C) _SLKC(Carbamidomethyl (C))SPLPI_ REV__ENSG00000127084|ENST00000375482|FGD3;REV__ENST00000467786.1_1_9:95796810-95797868:+|nuORF;REV__nc|ENSG00000127084|Q5JSP0-3|FGD3 6.723162845929126 0.3000504726104499 2 V{I|L} 2 -1 18.583 0 0 1.8335 0 0 783.3879261701187 0 783.3879261701187 0 2.385606273598313 0 0 0 0 0 0 0 V{I|L} 1.8335 - 10 NaN NaN 101644.4 NaN 20881 4841 25721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25726 101.1 NaN 161830 35 0 37360 0.327 + 34449 YPETLVNLIVL 11 27 637.3736551363623 1272.7327573395246 2 637.8755493164062 MULTI HCD FTMS 0 0 0 25725 35233.984375 0.022300154186261023 42 -0.6469039916992188 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 7.101721422024254 0.3877749288398915 2 V{I|L} 2 9 25.217 0 0 1.9813 0 0 1042.5682058020423 0 1042.5682058020423 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 1.9813 + + 2 NaN NaN 141417.5 NaN 20882 4842 25725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25727 101.1 NaN 102510 35 0 13635 0.261 + -1 DADMDSMCGM 10 41 554.1585984555935 1106.302643977987 2 554.6602783203125 MULTI HCD FTMS 0 0 0 25725 15458.0888671875 0.47906799503604747 4 -0.078857421875 2 2 Oxidation (M) _DADM(Oxidation (M))DSM(Oxidation (M))CGM_ REV__POU4F2|p.V251M|1|0.17|ENSG00000151615|chr4:146640329-146640329|G/A|missense_variant 0 0.4753037046562868 2 T{I|L}{M(Oxidation (M))|F} 3 -1 26.198 0 0 2.3681 0 0 727.092391147712 0 727.092391147712 0 15.228787452803374 0 0 0 0 0 0 0 T{I|L}{M(Oxidation (M))|F} 2.3681 - 26 + NaN NaN 125593.3 NaN 20883 4842 25725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25728 101.11 NaN 47663 35 0 6065 0.261 -1 QLYSFFKII 9 23 600.836534970491 NaN 0 600.8179321289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))QLYSFFKII_ chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|105 1.6526216038709556 0.28723846860855273 2 T{I|L}{I|L} 3 -1 11.682 0 0 0.97381 0 0 165.11830812281943 704.3031710260374 869.4214791488569 0 0 0 0 0 0 0 0 0 T{I|L}{I|L} 0.97381 - 6 + NaN NaN 103329.3 NaN 20884 4842 25725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25730 101.11 NaN 287060 35 0 61425 0.327 + 23285 RHLQDLVL 8 36 497.295624340295 992.57669574739 2 497.2958068847656 MULTI HCD FTMS 0 0 0 25729 208715.609375 0.36833574702856287 10 -0.1966400146484375 1 Unmodified _RHLQDLVL_ ENST00000443642.1_1_1:155288166-155291435:-|nuORF;ENST00000446880.5_1_1:155288166-155291089:-|nuORF 2.8892196856762586 0.5377058178582064 2 V{I|L}{M(Oxidation (M))|F} 3 7 11.972 0 0 1.2062 0 0 132.09848394833722 498.23371301822505 630.3321969665623 0 0 0 0 0 0 0 0 0 V{I|L}{M(Oxidation (M))|F} 1.2062 - 21 + NaN NaN 126861.6 NaN 20885 4843 25729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25731 101.12 NaN 168930 35 0 17114 0.261 + 21329 PSRRRPRHRVP 11 69 471.951738569818 1412.833386309654 3 471.9517822265625 MULTI HCD FTMS 0 0 0 25729 97585.6328125 0.5896567064678712 8 -0.17064666748046875 2 Unmodified _PSRRRPRHRVP_ ENST00000371933.7_1_1:47184401-47184626:-|nuORF 0.5059551277355931 0.4167017191902429 2 P 1 10 1.5938 0 0 0.11281 0 0 958.5202892410979 354.23871790103755 1312.7590071421355 0 0 0 0 0 0 0 0 0 + P 0.11281 + + 13 + NaN NaN 115916.7 NaN 20886 4843 25729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25732 101.12 NaN 72258 35 0 8135.8 0.261 + 5130 FERRRELRRQK 11 37 525.3096901757092 1572.9072411273273 3 525.3103637695312 MULTI HCD FTMS 0 0 0 25729 49720.8515625 0.5182532833874678 10 -0.1966400146484375 3 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 97362.1 NaN 20887 4843 25729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25733 101.12 NaN 85082 35 0 12239 0.261 -1 0 44 577.9244990492673 2884.5861129133364 5 578.3247680664062 MULTI HCD FTMS 0 0 0 25729 26662.6796875 0.7940938966426095 1 -0.01631927490234375 4 NaN NaN 2 [YT]{I|L} 3 -1 25.062 0 0 0.86881 0 0 0 2504.368283894058 2504.368283894058 17.614393726401687 0 0 0 0 0 1.6989700043360187 0 0 [YT]{I|L} 0.86881 - 10 NaN NaN 105823.7 NaN 20888 4843 25729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25735 101.13 NaN 156260 35 0 57768 0.327 + 5100 FEGFCLAG 8 37 422.1886024869599 842.3626520407198 2 422.1887512207031 MULTI HCD FTMS 0 0 0 25734 140377.1875 0.6435080901401542 1 -0.0199432373046875 1 Unmodified _FEGFCLAG_ ENSG00000137266|ENST00000406686|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;nc|ENSG00000137266|A1A5C7-4|SLC22A23;SLC22A23|p.V419Rfs*50|1|0.64|ENSG00000137266|chr6:3289823-3289824|-/A|frameshift_variant 0.7936320650641473 0.540814922690045 2 {I|L} 1 7 15.242 0 0 1.8095 0 0 155.09539029530396 571.1608488565649 726.2562391518688 0 0 0 0 0 0.8252574989159953 0 0 0 + {I|L} 1.8095 + + 4 + NaN NaN 113617.1 NaN 20889 4844 25734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25736 101.13 NaN 55088 35 0 6194 0.261 -1 VFIPMVVLW 9 36 560.3170282059109 NaN 0 560.2986450195312 PEAK HCD FTMS 0 0 0 25734 12234.2470703125 0.9336433337854535 1 -0.0199432373046875 2 Oxidation (M) _VFIPM(Oxidation (M))VVLW_ ENSG00000130733|ENST00000586748|YIPF2 5.230669730166228 0.26989974671959066 2 {I|L} 1 -1 5.4846 0 0 0.4903 0 0 359.2179664686592 643.2878029836851 1002.5057694523443 0 0 0 0 0 0 0 0 0 {I|L} 0.4903 + + 3 + NaN NaN 117088.1 NaN 20890 4844 25734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25737 101.14 NaN 44128 35 0 5927 0.261 + 32595 WKRRPGWK 8 29 557.325630729266 1112.6367085253319 2 557.3257446289062 MULTI HCD FTMS 0 0 0 25734 21755.4765625 0.9147511494745612 -2 0.02931976318359375 3 Unmodified _WKRRPGWK_ ENST00000286201.2_1_2:202901244-202901346:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111777.8 NaN 20891 4844 25734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25738 101.14 NaN 63270 35 0 6668.3 0.261 + 29900 VFDLVELEVL 10 36 588.3317841795827 NaN 0 588.3323364257812 PEAK HCD FTMS 0 0 0 25734 21019.36328125 0.8851865536110505 2 -0.04953765869140625 4 Unmodified _VFDLVELEVL_ ENSG00000136802|ENST00000372600|LRRC8A 20.41453444215458 0.2772770459383961 2 VE{I|L}E 4 6 26.186 0 0 2.2292 0 0 131.09686796710872 570.2927950494749 701.3896630165837 0 0 0 0 0 0.9247425010840047 0 0 0 + VE{I|L}E 2.2292 + + 30 + NaN NaN 114466.9 NaN 20892 4844 25734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25739 101.14 NaN 22282 35 0 3291.4 0.261 + -1 ESNCGQDCHND 11 22 639.7090454101562 NaN 0 639.7090454101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _ESNC(Carbamidomethyl (C))GQDCHND_ REV__ENSG00000134250|ENST00000256646|NOTCH2;REV__NOTCH2|p.Q1584Rfs*17|1|0.32|ENSG00000134250|chr1:119923745-119923745|T/-|frameshift_variant;REV__NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94600.1 NaN 20893 4844 25734 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25741 101.15 NaN 100560 35 0 8112.8 0.327 + 29634 VAPIIFLTI 9 38 493.8177786377205 985.621004342241 2 493.81805419921875 MULTI HCD FTMS 0 0 0 25740 37556.83203125 0.11682522835634272 -4 0.062286376953125 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 23.1484247019978 0.1603590852062899 2 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4769444375705 0 753.4769444375705 0 18.802112417116064 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 19 NaN NaN 114386.4 NaN 20894 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25742 101.15 NaN 184050 35 0 26080 0.261 + 10530 IPFFPDLQI 9 52 545.3027542654212 1088.5909555976423 2 545.8045654296875 MULTI HCD FTMS 0 0 0 25740 37960.40234375 0.7123003425437455 2 -0.0492095947265625 2 Unmodified _IPFFPDLQI_ ENSG00000175745|ENST00000327111|NR2F1;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2 19.256988751693697 0.19398022840297344 2 E{I|L}{I|L}Q{I|L} 5 6 39.38 0 0 3.6176 0 0 474.24751479316564 0 474.24751479316564 0 16.192803136799157 0 0 0 0 0 0.3807196863200844 0 E{I|L}{I|L}Q{I|L} 3.6176 - 159 NaN NaN 115937.7 NaN 20895 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25743 101.16 NaN 87926 35 0 15624 0.261 + -1 WGCLGLPGW 9 34 523.2510362802842 NaN 0 523.250244140625 PEAK HCD FTMS 0 0 0 25740 17853.67578125 0.5078220899794229 1 -0.02959442138671875 3 Carbamidomethyl (C) _WGC(Carbamidomethyl (C))LGLPGW_ REV__ENST00000461241.1_1_22:31518992-31523076:+|nuORF 2.302733041254933 0.2840881193086663 2 W 1 -1 2.4743 0 0 0.23689 0 0 358.1591027345933 497.2240084283813 855.3831111629746 0 0 0 0 0 0 0 0 0 W 0.23689 + + 2 + NaN NaN 95583.6 NaN 20896 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25744 101.16 NaN 37742 35 0 4732.9 0.261 + 22016 QFRRKFTL 8 25 548.3260175022497 NaN 0 548.326171875 PEAK HCD FTMS 0 0 0 25740 7162.58349609375 0.3827106339760679 1 -0.02959442138671875 4 Unmodified _QFRRKFTL_ REV__ENSG00000109794|ENST00000706927|FAM149A;REV__nc|ENSG00000109794|A5PLN7-2|FAM149A;REV__nc|ENSG00000109794|A5PLN7-4|FAM149A;REV__nc|ENSG00000109794|A5PLN7|FAM149A 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91537.2 NaN 20897 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25745 101.16 NaN 30993 35 0 7059.2 0.261 + -1 YNIKHFFMK 9 18 622.3166418890899 NaN 0 622.3173828125 PEAK HCD FTMS 0 0 0 25740 10838.0224609375 0.44515577494949843 -4 0.062286376953125 5 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 852.4282839229078 274.08307825260005 1126.5113621755079 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 3 + NaN NaN 97874.8 NaN 20898 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25746 101.17 NaN 41694 35 0 5789.9 0.261 -1 0 32 626.3796124125357 1250.7446718918713 2 626.8810424804688 MULTI HCD FTMS 0 0 0 25740 28003.619140625 0.24952176534995743 -9 0.12749481201171875 6 NaN NaN 2 M 1 -1 6.9897 0 0 0.55884 0 0 660.4057569522214 456.2722567193969 1116.6780136716184 0 0 0 0 0 0 0 0 0 M 0.55884 - 1 + NaN NaN 102079.4 NaN 20899 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25747 101.17 NaN 37561 35 0 7728.6 0.261 -1 DLWISWEEGM 10 25 641.276611328125 NaN 0 641.276611328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Oxidation (M) _DLWISWEEGM(Oxidation (M))_ ENSG00000008405|ENST00000008527|CRY1 1.6526216038709556 0.33876987398426067 2 {I|L} 1 -1 5.4846 0 0 0.42863 0 0 657.2008602521499 506.2395418756469 1163.440402127797 0 0 0 0 0 0 0 0 0 {I|L} 0.42863 + + 3 + NaN NaN 114864.7 NaN 20900 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25748 101.17 NaN 23533 35 0 3120.1 0.261 -1 RQQRDLAYC 9 22 605.2922973632812 NaN 0 605.2922973632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Carbamidomethyl (C) _RQQRDLAYC(Carbamidomethyl (C))_ ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98238.3 NaN 20901 4845 25740 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25750 101.18 NaN 348620 35 0 112760 0.327 + 6635 FPLSITLVL 9 38 501.8152576901558 1001.6159624471117 2 501.8153991699219 MULTI HCD FTMS 0 0 0 25749 135919.125 0.047610621979929116 -3 0.06585693359375 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 34.10243960390752 0.09241788333544565 2 MT{I|L}V{I|L} 5 5 49.821 0 0 4.974 0 0 426.28413588691564 0 426.28413588691564 0 49.820618910682484 0 0 0 1 0 0.4247425010840047 0 MT{I|L}V{I|L} 4.974 - 25 NaN NaN 141205.9 NaN 20902 4846 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25751 101.18 NaN 142890 35 0 20238 0.261 + 29489 TYVKKKEFD 9 61 579.312844780512 NaN 0 579.2925415039062 PEAK HCD FTMS 0 0 0 25749 11500.3525390625 1 0 0 2 Unmodified _TYVKKKEFD_ REV__ENSG00000113361|ENST00000265071|CDH6;REV__nc|ENSG00000113361|P55285-2|CDH6 4.3292370932331545 0.2742679634796037 2 {M(Oxidation (M))|F}NV 3 -1 11.427 0 0 0.98794 0 0 164.1062670983302 629.2957857721311 793.4020528704614 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}NV 0.98794 - 19 + NaN NaN 124948.8 NaN 20903 4846 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25752 101.19 NaN 58196 35 0 5559.8 0.261 + 12467 KQRCVVKGF 9 35 532.8049195115594 1063.5952860899188 2 533.3072509765625 MULTI HCD FTMS 0 0 0 25749 5067.30712890625 0.07218338827458287 13 -0.22272491455078125 3 Unmodified _KQRCVVKGF_ ENSG00000118322|ENST00000327245|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;nc|ENSG00000118322|O94823-2|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B 7.289230182591677 0.29575926068275815 2 P{M(Oxidation (M))|F} 2 8 24.464 0 0 2.3001 0 0 801.46684462715 0 801.46684462715 0 -1.5051499783199063 -1.5051499783199063 0 0 0.5 0 0 0 P{M(Oxidation (M))|F} 2.3001 - 8 NaN NaN 97235.9 NaN 20904 4846 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25753 101.19 NaN 74785 35 0 13828 0.261 -1 CYRRWLEL 8 34 598.3052254212007 1194.5958979092013 2 598.3056640625 MULTI HCD FTMS 0 0 0 25749 13985.1181640625 0.2955331750141134 -4 0.078857421875 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRRWLEL_ ENST00000452276.5_1_8:94768078-94770751:+|nuORF;ENST00000518319.5_1_8:94768050-94770751:+|nuORF 11.640296217721598 0.50814828952472 2 E{I|L} 2 -1 25.217 0 0 2.1109 0 0 934.4584289338212 0 934.4584289338212 0 20.612431371158735 0 0 0 0.4247425010840047 0 0 0 E{I|L} 2.1109 + + 5 NaN NaN 101382.3 NaN 20905 4846 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25754 101.19 NaN 40495 35 0 6855.1 0.261 + -1 RNMPCLKFLC 10 31 641.315185546875 NaN 0 641.315185546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Carbamidomethyl (C) _RNMPC(Carbamidomethyl (C))LKFLC_ REV__ENSG00000150995|ENST00000649015|ITPR1;REV__ENST00000467056.5_1_3:4536161-4687445:+|nuORF;REV__nc|ENSG00000150995|Q14643-2|ITPR1;REV__nc|ENSG00000150995|Q14643-3|ITPR1;REV__nc|ENSG00000150995|Q14643-4|ITPR1;REV__nc|ENSG00000150995|Q14643-5|ITPR1;REV__nc|ENSG00000150995|Q14643-6|ITPR1;REV__nc|ENSG00000150995|Q14643-7|ITPR1;REV__nc|ENSG00000150995|Q14643-8|ITPR1 1.4819007175156935 0.33891598740166873 2 {I|L} 1 -1 5.4846 0 0 0.42827 0 0 658.271805174025 506.2424410455688 1164.5142462195938 0 0 0 0 0 0 0 0 0 {I|L} 0.42827 + + 2 + NaN NaN 111540.1 NaN 20906 4846 25749 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25756 101.2 NaN 251860 35 0 59548 0.327 -1 SRKKPYECTQ 10 37 432.885229636791 NaN 0 432.8851623535156 PEAK HCD FTMS 0 0 0 25755 129693.578125 0.6515973907181083 48 -0.65411376953125 1 Carbamidomethyl (C) _SRKKPYEC(Carbamidomethyl (C))TQ_ ENSG00000198429|ENST00000429654|ZNF69 0.6268255596534771 0.33964781322640114 2 {M(Oxidation (M))|F} 1 -1 0.9691 0 0 0.1122 0 0 303.393798041357 410.2950838678344 713.6888819091914 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.1122 - 1 + NaN NaN 119113.7 NaN 20907 4847 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25757 101.2 NaN 289910 35 0 31198 0.261 + 29163 TYIPPLLVAF 10 51 567.3338459008424 1132.6531388684848 2 567.3341674804688 MULTI HCD FTMS 0 0 0 25755 95750.2890625 0.43522135356557284 7 -0.13719940185546875 2 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 41.8396318013385 0.12944265636084 2 [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 10 0 + 72.452 0 0 6.3967 6.3967 94.283 0 0 0 25.764837301042718 51.48325926497115 25.764837301042718 72.45235939505172 0 1.8807196863200843 2 0 0 + + [YT]{I|L}P[{I|L}P]{I|L}VA{M(Oxidation (M))|F} 6.3967 + + 137 NaN NaN 127221.3 NaN 20908 4847 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25758 101.21 NaN 68924 35 0 18716 0.262 + 25658 SHLPGEEH 8 27 453.20950337943293 NaN 0 453.2095031738281 PEAK HCD FTMS 0 0 0 25755 34449.890625 0.6225143059383206 -90 1.4882049560546875 3 Unmodified _SHLPGEEH_ ENST00000550168.5_1_12:49209469-49210697:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108238.3 NaN 20909 4847 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25759 101.21 NaN 58903 35 0 13012 0.261 + 635 APIAIMLWKIL 11 39 634.89299318115 1267.7714334291 2 634.8934936523438 MULTI HCD FTMS 0 0 0 25755 39309.35546875 0.29156109383096146 -5 0.09847259521484375 4 Unmodified _APIAIMLWKIL_ REV__ENSG00000173208|ENST00000308666|ABCD2 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 112128.2 NaN 20910 4847 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25760 101.21 NaN 39966 35 0 5052.1 0.261 + 35548 YYGPLNLLTF 10 20 600.8186801667188 1199.6228074002374 2 600.8196411132812 MULTI HCD FTMS 0 0 0 25755 19017.63671875 0.5096760151822998 3 -0.06223297119140625 5 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 8.155526934196011 0.43213520406898465 2 T{M(Oxidation (M))|F} 2 8 25.969 0 0 2.1648 0 0 933.4957965856046 0 933.4957965856046 0 25.969100130080562 0 0 0 0.5 0 0 0 + T{M(Oxidation (M))|F} 2.1648 + + 3 NaN NaN 101356.9 NaN 20911 4847 25755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25762 101.22 NaN 139670 35 0 18742 0.327 + 6601 FPLPAARRP 9 39 512.8063287531803 1023.5981045731606 2 512.8065795898438 MULTI HCD FTMS 0 0 0 25761 70159.09375 0.09187776210394412 -1 0.0196533203125 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 21.74664581756881 0.17247014374749275 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 -1 37.447 0 0 3.6584 0 0 0 663.3702352706792 663.3702352706792 21.249387366083 0 0 0 0 1 1.6989700043360187 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3.6584 + + 10 NaN NaN 122227.1 NaN 20912 4848 25761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25763 101.22 NaN 38864 35 0 6563.8 0.261 -1 PFTVCSLTSL 10 25 562.7863632936807 1123.5581736541612 2 562.7863159179688 MULTI HCD FTMS 0 0 0 25761 18404.837890625 0.10120899249887592 15 -0.24294281005859375 2 Carbamidomethyl (C) _PFTVC(Carbamidomethyl (C))SLTSL_ ENST00000503574.1_1_4:109543115-109543474:+|nuORF 5.731851221503515 0.44496410492002586 2 {I|L} 1 -1 14.732 0 0 1.3112 0 0 691.301717210605 316.15021692447505 1007.4519341350801 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.3112 + + 3 + NaN NaN 91825.8 NaN 20913 4848 25761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25764 101.23 NaN 50836 35 0 7008.7 0.261 + 14556 LFHPQVTRSS 10 22 586.3154640746237 NaN 0 586.31494140625 PEAK HCD FTMS 0 0 0 25761 22172.0859375 0.6475875823638342 8 -0.153350830078125 3 Unmodified _LFHPQVTRSS_ REV__ENSG00000170471|ENST00000262879|RALGAPB;REV__nc|ENSG00000170471|Q86X10-2|RALGAPB;REV__nc|ENSG00000170471|Q86X10-3|RALGAPB 3.944395688203298 0.33680843299986807 2 {I|L} 1 -1 6.9897 0 0 0.5971 0 0 132.1043650309462 922.4079130993697 1054.512278130316 0 0 0 0 0 0 0 0 0 {I|L} 0.5971 + + 13 + NaN NaN 112116.4 NaN 20914 4848 25761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25765 101.23 NaN 202280 35 0 50788 0.261 + 34450 YPETLVNLIVL 11 30 637.3736551363623 1272.7327573395246 2 637.3861694335938 MULTI HCD FTMS 0 0 0 25761 19508.2890625 0.009324277839813641 48 -0.643951416015625 4 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 12.872603262515298 0.344922997490724 2 V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{I|L} 6 5 34.526 0 0 2.7127 0 0 603.2918568341812 0 603.2918568341812 0 29.921525057367404 0 0 0 1 0 0 0 + V{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{I|L} 2.7127 + + 12 NaN NaN 135633.1 NaN 20915 4848 25761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25766 101.23 NaN 40392 35 0 5226.5 0.262 + 20659 PFIVDLITF 9 37 532.8049195115594 1063.5952860899188 2 533.3067016601562 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _PFIVDLITF_ ENSG00000126456|ENST00000377139|IRF3 1.844237919475145 0.33703635659052655 2 G 1 9 0.71334 0 0 0.067069 0 0 492.29494536901876 511.2666109674437 1003.5615563364624 0 0 0 0 0 0 0 0 0 G 0.067069 - 1 + NaN NaN 89227.5 NaN 20916 4848 25761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25767 101.24 NaN 60610 35 0 8650.4 0.261 + 35223 YVLVDLLF 8 45 491.286093205516 980.557633477832 2 491.2862854003906 MULTI HCD FTMS 0 0 0 25761 9462.048828125 0.28743805885570134 -1 0.0196533203125 6 Unmodified _YVLVDLLF_ REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|69 13.50788311687929 0.4944073034352369 2 {I|L}{I|L}{M(Oxidation (M))|F} 3 -1 33.94 0 0 3.4613 0 0 589.3114491193375 0 589.3114491193375 0 33.94016261540408 0 0 0 0.7742275032520141 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F} 3.4613 + + 7 NaN NaN 104535.8 NaN 20917 4848 25761 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25769 101.24 NaN 216450 35 0 28608 0.327 -1 0 62 417.922085380478 1250.744426741634 3 417.92193603515625 MULTI HCD FTMS 0 0 0 25768 152939.1875 0.6124988306144663 -3 0.06229400634765625 1 NaN NaN 2 P 1 -1 5.4846 0 0 0.4385 0 0 1030.6135806496402 120.05027185611561 1150.6638525057558 0 0 0 0 0 0 0 0 0 P 0.4385 - 11 + NaN NaN 134021.6 NaN 20918 4849 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25770 101.24 NaN 105380 35 0 10163 0.261 + 11018 IYEPNFIFF 9 39 595.3001997493261 1188.5858465654521 2 595.3008422851562 MULTI HCD FTMS 0 0 0 25768 19248.994140625 0.3444101918873183 7 -0.1303253173828125 2 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 22.736283301280096 0.1639198954644489 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 35.005 0 0 2.9451 0 0 763.3544178693375 0 763.3544178693375 0 22.557809497117844 0 0 0 0.8807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9451 + + 14 NaN NaN 129178.1 NaN 20919 4849 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25771 101.25 NaN 71416 35 0 6232.5 0.261 + 16518 LTIYDSSFLI 10 33 586.3154640746237 NaN 0 586.3158569335938 PEAK HCD FTMS 0 0 0 25768 30745.66015625 0.8979988524711175 9 -0.1526947021484375 3 Unmodified _LTIYDSSFLI_ REV__ENSG00000185294|ENST00000329196|SPPL2C;REV__SPPL2C|p.E209Kfs*47|1|0.36|ENSG00000185294|chr17:45845531-45845531|G/-|frameshift_variant 3.944395688203298 0.33680843299986807 2 Y 1 -1 6.9897 0 0 0.5971 0 0 724.4217473857724 280.1093031779486 1004.531050563721 0 0 0 0 0 0 0 0 0 Y 0.5971 + + 13 + NaN NaN 99190.7 NaN 20920 4849 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25772 101.25 NaN 131410 35 0 34406 0.261 + 34451 YPETLVNLIVL 11 30 637.3736551363623 1272.7327573395246 2 637.3737182617188 MULTI HCD FTMS 0 0 0 25768 41092.0078125 0.0196405382661703 49 -0.6397476196289062 4 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 4.5288652416199255 0.3990586020344083 2 V{I|L} 2 9 25.217 0 0 1.9813 0 0 1042.5675192633428 0 1042.5675192633428 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + V{I|L} 1.9813 + + 3 NaN NaN 118354.8 NaN 20921 4849 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25773 101.25 NaN 65627 35 0 11597 0.261 -1 CYRRWLEL 8 27 598.3052254212007 1194.5958979092013 2 598.8076171875 MULTI HCD FTMS 0 0 0 25768 33765.43359375 1 0 0 5 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRRWLEL_ ENST00000452276.5_1_8:94768078-94770751:+|nuORF;ENST00000518319.5_1_8:94768050-94770751:+|nuORF 20.453626601364224 0.4433031943603284 2 W{I|L}E{I|L} 4 -1 26.159 0 0 2.1897 0 0 635.2951909773639 0 635.2951909773639 0 23.68440000316717 0 0 0 1.1861818737241734 0 0.5 0 W{I|L}E{I|L} 2.1897 + + 16 + NaN NaN 100358.6 NaN 20922 4849 25768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25775 101.26 NaN 168080 35 0 27973 0.327 -1 YVRTAWML 8 48 528.2710685924528 1054.5275842517055 2 528.2709350585938 MULTI HCD FTMS 0 0 0 25774 66442.1875 0.25343541077301046 1 -0.02294158935546875 1 Oxidation (M) _YVRTAWM(Oxidation (M))L_ ENST00000273610.3_1_3:48599595-48600222:-|nuORF 5.230669730166228 0.5342319408533849 2 [YV]AV 4 -1 28.672 0 0 2.719 0 0 0 619.2680682207086 619.2680682207086 13.187587626244124 0 0 0 0 0 1.6989700043360187 0 0 [YV]AV 2.719 - 47 NaN NaN 117623 NaN 20923 4850 25774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25776 101.26 NaN 147130 35 0 25020 0.261 + 4903 FAIPFAITI 9 48 496.7944549416234 NaN 0 496.7946472167969 PEAK HCD FTMS 0 0 0 25774 52255.26171875 0.10146205170439386 17 -0.268829345703125 2 Unmodified _FAIPFAITI_ ENSG00000170425|ENST00000304222|ADORA2B 28.486842064014134 0.13043271994793734 2 T{I|L} 2 7 14.508 0 0 1.4632 0 0 131.09492865686144 643.3245333307249 774.4194619875864 0 0 0 0 0 0.805462187404089 0 0 0 + T{I|L} 1.4632 + + 8 + NaN NaN 99611.3 NaN 20924 4850 25774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25777 101.27 NaN 52129 35 0 9219.3 0.261 + 31733 VYLLIDAVI 9 28 509.8128860851919 1017.6112192371838 2 509.81304931640625 MULTI HCD FTMS 0 0 0 25774 20983.826171875 0.1617700777516479 -2 0.04257965087890625 3 Unmodified _VYLLIDAVI_ REV__ENSG00000169682|ENST00000311008|SPNS1;REV__ENST00000569969.5_2_16:28993554-28995617:+|nuORF;REV__nc|ENSG00000169682|Q9H2V7-2|SPNS1;REV__nc|ENSG00000169682|Q9H2V7-3|SPNS1;REV__nc|ENSG00000169682|Q9H2V7-4|SPNS1 4.75600775471527 0.31496297302216103 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 98431.6 NaN 20925 4850 25774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25778 101.27 NaN 74801 35 0 17917 0.261 + 30167 VGYLLPPL 8 33 436.2678360982768 870.5211192633536 2 436.26788330078125 MULTI HCD FTMS 0 0 0 25774 17482.69921875 0.23775911906371303 1 -0.02294158935546875 4 Unmodified _VGYLLPPL_ REV__ENSG00000168065|ENST00000301891|SLC22A11;REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11 2.8892196856762586 0.5377058178582064 2 R 1 -1 1.2591 0 0 0.14463 0 0 357.20509250729737 354.1836336725219 711.3887261798193 0 0 0 0 0 0 0 0 0 R 0.14463 - 1 + NaN NaN 95667.2 NaN 20926 4850 25774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25779 101.27 NaN 25465 35 0 5730.9 0.261 + 22243 QNVRKKKEKK 10 22 643.406113800729 1284.797674668258 2 643.4058227539062 MULTI HCD FTMS 0 0 0 25774 30461.23046875 0.6475362967258794 -3 0.06223297119140625 5 Unmodified _QNVRKKKEKK_ REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99146.2 NaN 20927 4850 25774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25780 101.28 NaN 67873 35 0 9763 0.262 + 7012 FPYGLFELV 9 36 542.7892520370605 1083.5639511409208 2 542.7893676757812 MULTI HCD FTMS 0 0 0 25774 21942.232421875 0.5542989211560442 -13 0.23171234130859375 6 Unmodified _FPYGLFELV_ ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF 7.289230182591677 0.29575926068275815 2 G[{M(Oxidation (M))|F}E]{I|L}V 5 4 21.8 0 0 2.0119 0 0 520.2735462873062 0 520.2735462873062 0 21.80019415929312 0 0 0 0.3807196863200844 0 0 0 G[{M(Oxidation (M))|F}E]{I|L}V 2.0119 - 4 NaN NaN 119970.9 NaN 20928 4850 25774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25782 101.28 NaN 257480 35 0 24570 0.327 -1 0 75 423.5975972538698 1267.7709623618096 3 423.5976867675781 MULTI HCD FTMS 0 0 0 25781 85997.0390625 0.4750071935342943 -7 0.154327392578125 1 NaN NaN 2 A 1 -1 2.2185 0 0 0.17499 0 0 545.3410440041908 648.3818453424436 1193.7228893466345 0 0 0 0 0 0 0 0 0 A 0.17499 - 8 + NaN NaN 136029.8 NaN 20929 4851 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25783 101.29 NaN 63970 35 0 4428.1 0.261 + 5131 FERRRELRRQK 11 40 525.3096901757092 1572.9072411273273 3 525.310302734375 MULTI HCD FTMS 0 0 0 25781 5642.580078125 0.05881407016106947 18 -0.27510833740234375 2 Unmodified _FERRRELRRQK_ ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-2|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1 0.09484139111097674 0.41850472438158626 2 Q 1 10 0.71334 0 0 0.045352 0 0 1260.0644199376773 181.76154504947502 1441.8259649871522 0 0 0 0 0 0 0 0 0 + Q 0.045352 + + 4 + NaN NaN 101985.5 NaN 20930 4851 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25784 101.29 NaN 49763 35 0 5766.4 0.261 + 32596 WKRRPGWK 8 38 557.325630729266 1112.6367085253319 2 557.3263549804688 MULTI HCD FTMS 0 0 0 25781 5499.07177734375 0.23121912383381343 5 -0.08782958984375 3 Unmodified _WKRRPGWK_ ENST00000286201.2_1_2:202901244-202901346:+|nuORF 0.6903765706972694 0.5409681170271811 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104556.7 NaN 20931 4851 25781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25786 101.3 NaN 109600 35 0 7401.1 0.327 -1 0 50 626.3796124125357 1250.7446718918713 2 626.3797607421875 MULTI HCD FTMS 0 0 0 25785 161722.015625 0.8790560504545902 -2 0.0358734130859375 1 NaN NaN 2 PP 2 -1 14.38 0 0 1.1497 0 0 572.3395338076901 481.26535974674067 1053.6048935544309 0 0 0 0 0 0.7302046884880937 0 0 0 PP 1.1497 - 8 + NaN NaN 122235.8 NaN 20932 4852 25785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25787 101.3 NaN 241650 35 0 28111 0.465 + 30821 VPVRRWPF 8 57 528.8090376355323 1055.6035223378644 2 528.8095703125 MULTI HCD FTMS 0 0 0 25785 69856.4453125 0.7780090885226492 -2 0.0358734130859375 2 Unmodified _VPVRRWPF_ ENST00000454741.5_1_22:28395954-28396164:+|nuORF 13.50788311687929 0.4944073034352369 2 VYAV 4 7 58.66 0 0 5.557 0 0 0 620.3425545140699 620.3425545140699 39.680475292681265 0 0 0 0 1.274227503252014 2 0 0 VYAV 5.557 - 74 + NaN NaN 130544.1 NaN 20933 4852 25785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25789 101.31 NaN 617750 35 0 205190 0.327 + 6636 FPLSITLVL 9 49 501.8152576901558 1001.6159624471117 2 501.8154296875 MULTI HCD FTMS 0 0 0 25788 2009700 0.7039705927555342 4 -0.07147979736328125 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 60.38955033654506 0.017036522530421875 2 T{I|L}MT{I|L}V{I|L} 7 4 63.849 0 0 6.3746 0 0 212.1519032209 0 212.1519032209 0 56.859273021664976 0 0 0 1.4247425010840047 0 1.2302046884880937 0 T{I|L}MT{I|L}V{I|L} 6.3746 - 89 NaN NaN 179459.8 NaN 20934 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25790 101.31 NaN 765840 35 0 168060 0.261 + 31434 VYAVPILIF 9 54 517.8179256550326 1033.621298376865 2 517.8179931640625 MULTI HCD FTMS 0 0 0 25788 432150.375 0.6856332860670125 -5 0.09151458740234375 2 Unmodified _VYAVPILIF_ ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 67.41302359171755 0.009925318700911543 2 [YV]AV[{I|L}P]{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 57.157 0 0 5.5298 5.5298 88.648 0 0 0 3.1234684152074976 50.16765926813832 3.1234684152074976 9.771212547196626 0 2.305462187404089 0 0 0 + + [YV]AV[{I|L}P]{I|L}{I|L}{M(Oxidation (M))|F};[YV]AV[{I|L}P]{I|L}{M(Oxidation (M))|F}{I|L} 5.5298;4.5845 +;- + 151 NaN NaN 199956.1 NaN 20935 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25791 101.32 NaN 169380 35 0 20170 0.261 + 29635 VAPIIFLTI 9 40 493.8177786377205 985.621004342241 2 493.8179931640625 MULTI HCD FTMS 0 0 0 25788 25576.451171875 0.07955875368329617 4 -0.07147979736328125 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 24.67388899826682 0.14717941214954053 2 T{I|L} 2 -1 29.776 0 0 3.0211 0 0 753.4765872909028 0 753.4765872909028 0 21.830984399557423 0 0 0 0.5 0 0.3807196863200844 0 T{I|L} 3.0211 + + 29 NaN NaN 117381.2 NaN 20936 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25792 101.32 NaN 90125 35 0 16151 0.261 -1 CYRRWLEL 8 38 598.3052254212007 1194.5958979092013 2 598.3054809570312 MULTI HCD FTMS 0 0 0 25788 25453.509765625 0.5378829458601263 3 -0.06183624267578125 4 Carbamidomethyl (C) _C(Carbamidomethyl (C))YRRWLEL_ ENST00000452276.5_1_8:94768078-94770751:+|nuORF;ENST00000518319.5_1_8:94768050-94770751:+|nuORF 20.453626601364224 0.4433031943603284 2 W{I|L}E{I|L} 4 -1 36.102 0 0 3.0221 0 0 635.2964344709 0 635.2964344709 0 31.49797211252192 0 0 0 0.6549471895720985 0 0 0 W{I|L}E{I|L} 3.0221 + + 29 NaN NaN 112983.7 NaN 20937 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25793 101.32 NaN 130210 35 0 40677 0.261 + 30383 VLKYYNNSS 9 41 544.2735210046025 1086.5324890760048 2 544.2737426757812 MULTI HCD FTMS 0 0 0 25788 38974.7578125 0.8400826380523527 -5 0.09151458740234375 5 Unmodified _VLKYYNNSS_ REV__ENSG00000253305|ENST00000520790|PCDHGB6;REV__ENSG00000254122|ENST00000398594|PCDHGB7;REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F}S 2 -1 4.6927 0 0 0.4319 0 0 326.68765372619856 522.7578829400999 849.4455366662985 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}S 0.4319 - 5 + NaN NaN 120100 NaN 20938 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25794 101.33 NaN 103870 35 0 9895 0.261 + 11019 IYEPNFIFF 9 41 595.3001997493261 1188.5858465654521 2 595.3010864257812 MULTI HCD FTMS 0 0 0 25788 41368.515625 0.7401809310352443 11 -0.164398193359375 6 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 17.11289562659939 0.2125047172822487 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 35.005 0 0 2.9451 0 0 763.3540357587165 0 763.3540357587165 0 30.400990676322905 0 0 0 0.8807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.9451 + + 52 NaN NaN 112560.3 NaN 20939 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25795 101.33 NaN 47631 35 0 6997.4 0.261 -1 IFKCCKLIP 9 32 561.314730538954 NaN 0 561.3143920898438 PEAK HCD FTMS 0 0 0 25788 9017.22265625 0.4132024506010288 1 -0.026031494140625 7 Carbamidomethyl (C) _IFKC(Carbamidomethyl (C))CKLIP_ ENSG00000124786|ENST00000644923|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3 2.0597508629832335 0.2852655770354268 2 R 1 -1 7.7642 0 0 0.69285 0 0 779.384391642558 182.11023889713127 961.4946305396892 0 0 0 0 0 0.5 0 0 0 R 0.69285 - 2 + NaN NaN 110497.8 NaN 20940 4853 25788 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25797 101.33 NaN 416120 35 0 63471 0.327 + 20691 PFPRSLRPA 9 58 520.8035656823615 NaN 0 520.7882690429688 PEAK HCD FTMS 0 0 0 25796 44847.09765625 1 0 0 1 Unmodified _PFPRSLRPA_ ENST00000325954.8_2_12:120972163-120972457:+|nuORF 7.289230182591677 0.2599242500475609 2 V 1 9 5.4846 0 0 0.52757 0 0 159.12032458182654 778.3803921012207 937.5007166830471 0 0 0 0 0 0 0 0 0 V 0.52757 - 4 + NaN NaN 162421 NaN 20941 4854 25796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25798 101.34 NaN 40806 35 0 8197.1 0.261 -1 GYLLMKTYF 9 28 576.2936411765885 NaN 0 576.2938842773438 PEAK HCD FTMS 0 0 0 25796 23658.669921875 0.477241133410554 2 -0.03580474853515625 2 Oxidation (M) _GYLLM(Oxidation (M))KTYF_ ENSG00000164187|ENST00000296603|LMBRD2 3.944395688203298 0.27613285122220627 2 K 1 -1 5.4846 0 0 0.47668 0 0 593.2985117459519 426.16694055728755 1019.4654523032395 0 0 0 0 0 0 0 0 0 K 0.47668 + + 1 + NaN NaN 109932.2 NaN 20942 4854 25796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25799 101.34 NaN 255730 35 0 45200 0.261 + 30483 VLTYPVLTL 9 50 509.8128860851919 1017.6112192371838 2 509.8309326171875 MULTI HCD FTMS 0 0 0 25796 129713.890625 1 0 0 3 Unmodified _VLTYPVLTL_ REV__ENSG00000141527|ENST00000648509|CARD14;REV__ENST00000575500.5_2_17:78178032-78182141:+|nuORF 19.256988751693697 0.19398022840297344 2 MT{I|L}V{I|L} 5 -1 35.758 0 0 3.5139 0 0 442.2784596173844 0 442.2784596173844 0 16.5443874496362 0 0 0 1.242992819099939 0 0.3494850021680094 0 MT{I|L}V{I|L} 3.5139 - 121 NaN NaN 128890.5 NaN 20943 4854 25796 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25801 101.35 NaN 101250 35 0 16250 0.327 + 6602 FPLPAARRP 9 32 512.8063287531803 1023.5981045731606 2 512.8067626953125 MULTI HCD FTMS 0 0 0 25800 52381.9609375 0.06859748449293102 6 -0.080169677734375 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 16.942295170755138 0.21397866736869717 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3 -1 37.447 0 0 3.6584 0 0 0 663.3698995773199 663.3698995773199 21.249387366083 0 0 0 0 1 2 0 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3.6584 + + 12 NaN NaN 117744.7 NaN 20944 4855 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25802 101.35 NaN 93330 35 0 12876 0.261 + 3528 EIKKQLTRRP 10 46 634.89299318115 1267.7714334291 2 634.8929443359375 MULTI HCD FTMS 0 0 0 25800 92815.421875 0.6884204943978359 3 -0.04528045654296875 2 Unmodified _EIKKQLTRRP_ REV__C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;REV__ENSG00000106804|ENST00000223642|C5 1.4551175022131473 0.4676015363898197 2 A 1 -1 3.0989 0 0 0.24444 0 0 413.26137591132493 780.4584444635374 1193.7198203748624 0 0 0 0 0 0 0 0 0 A 0.24444 - 1 + NaN NaN 118221.9 NaN 20945 4855 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25803 101.36 NaN 167610 35 0 12934 0.261 + 29164 TYIPPLLVAF 10 56 567.3338459008424 1132.6531388684848 2 567.333984375 MULTI HCD FTMS 0 0 0 25800 41716.765625 0.18961851060145735 15 -0.226470947265625 3 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 43.85829265575387 0.11192494793849486 2 {I|L}VA{M(Oxidation (M))|F} 4 6 45.974 0 0 4.059 0 0 684.3852688507098 0 684.3852688507098 0 26.510234424404686 0 0 0 1.8807196863200843 0 0 0 + {I|L}VA{M(Oxidation (M))|F} 4.059 + + 49 + NaN NaN 117569.6 NaN 20946 4855 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25804 101.36 NaN 71065 35 0 15303 0.261 -1 0 33 487.13670672830733 486.12943026170734 1 487.800048828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 R 1 -1 3.0989 0 0 0.63747 0 0 168.02232684549483 158.98243127994377 327.00475812543857 0 0 0 0 0 0 0 0 0 R 0.63747 - 1 + NaN NaN 115673 NaN 20947 4855 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25805 101.36 NaN 57392 35 0 4505.5 0.261 -1 0 43 539.985004553399 1616.933184260397 3 540.319580078125 MULTI HCD FTMS 0 0 0 25800 23688.904296875 0.42829735691079746 -21 0.35930633544921875 5 NaN NaN 2 V 1 -1 0.3786 0 0 0.023415 0 0 1158.6621098969188 356.1761568658813 1514.8382667628 0 0 0 0 0 0 0 0 0 V 0.023415 - 1 + NaN NaN 99549.4 NaN 20948 4855 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25806 101.37 NaN 51133 35 0 5809 0.261 + 15005 LLLLLLKRK 9 33 555.4103728002839 NaN 0 555.287841796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _LLLLLLKRK_ REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109224.8 NaN 20949 4855 25800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25808 101.37 NaN 63260 35 0 6586.3 0.327 -1 YIMRTEDIL 9 36 585.2979087585056 1168.5812645838112 2 585.8130493164062 MULTI HCD FTMS 0 0 0 25807 9295.6767578125 0.5268012005531683 5 -0.05725860595703125 1 Oxidation (M) _YIM(Oxidation (M))RTEDIL_ ENST00000329286.6_1_18:8638524-8638644:+|nuORF 2.302733041254933 0.33356062215410776 2 {I|L} 1 -1 6.9897 0 0 0.59814 0 0 130.06561830058973 922.405374932326 1052.4709932329158 0 0 0 0 0 0 0 0 0 {I|L} 0.59814 + + 10 + NaN NaN 105144.5 NaN 20950 4856 25807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25809 101.37 NaN 52507 35 0 8344.6 0.261 + 29500 TYVPWPLML 9 38 560.2989702814878 1118.5833876297754 2 560.317626953125 MULTI HCD FTMS 0 0 0 25807 11831.5615234375 0.19024327610294448 21 -0.29242706298828125 2 Unmodified _TYVPWPLML_ ENSG00000168806|ENST00000305641|LCMT2;ENST00000567039.1_1_15:43620629-43622752:-|nuORF 11.640296217721598 0.25978676193971967 2 [YV]P{I|L}[WP]P 7 5 26.739 0 0 2.3904 0 0 0 263.1047762506469 263.1047762506469 26.738569581344507 0 0 0 0 0.9247425010840047 0 0 0 [YV]P{I|L}[WP]P 2.3904 - 15 + NaN NaN 105849.5 NaN 20951 4856 25807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25811 101.38 NaN 344870 35 0 43226 0.327 -1 0 65 417.922085380478 1250.744426741634 3 417.922119140625 MULTI HCD FTMS 0 0 0 25810 189988.953125 0.7608776633439952 5 -0.06036376953125 1 NaN NaN 2 K 1 -1 5.8412 0 0 0.46702 0 0 722.4303029015632 397.1858309381469 1119.61613383971 0 0 0 0 0 0.4247425010840047 0 0 0 K 0.46702 - 23 + NaN NaN 132772.3 NaN 20952 4857 25810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25812 101.38 NaN 67338 35 0 8268.2 0.261 -1 DYMNLLGMIF 10 32 624.7851990701316 1247.5558452070632 2 624.7866821289062 MULTI HCD FTMS 0 0 0 25810 34234.45703125 0.25418856151893715 -41 0.6860809326171875 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 10.799506525563784 0.4100970765206026 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 32.218 0 0 2.5825 0 0 652.2515598162298 0 652.2515598162298 0 32.21848749616356 0 0 0 1 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.5825 + + 7 NaN NaN 105386.8 NaN 20953 4857 25810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25813 101.39 NaN 50054 35 0 11008 0.261 -1 0 31 601.5827745740141 NaN 0 601.8082885742188 PEAK HCD FTMS 0 0 0 25810 5325.9501953125 0.9848649713607079 -1 0.0096435546875 3 NaN NaN 2 {I|L}{I|L} 2 -1 10.969 0 0 0.91322 0 0 764.8465356208814 207.11330591373283 971.9598415346142 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.91322 - 5 + NaN NaN 99931.9 NaN 20954 4857 25810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25815 101.39 NaN 290570 35 0 38093 0.411 -1 PYPHLGCVL 9 75 528.2710685924528 1054.5275842517055 2 528.27099609375 MULTI HCD FTMS 0 0 0 25814 99599.8984375 0.37991135035188206 9 -0.13568878173828125 1 Carbamidomethyl (C) _PYPHLGC(Carbamidomethyl (C))VL_ ENST00000487585.5_1_3:13524974-13544537:+|nuORF 9.347437153973935 0.2795965555214564 2 [YV]AV 4 -1 27.167 0 0 2.5762 0 0 0 619.2684649492243 619.2684649492243 8.455612550363796 0 0 0 0 0 2 0 0 [YV]AV 2.5762 - 209 NaN NaN 171404.7 NaN 20955 4858 25814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25817 101.4 NaN 220740 35 0 22869 0.327 -1 0 71 423.5975972538698 1267.7709623618096 3 423.5976867675781 MULTI HCD FTMS 0 0 0 25816 122217.625 0.6750726732519798 1 -0.019378662109375 1 NaN NaN 2 P 1 -1 8.4949 0 0 0.67006 0 0 1047.6403298928626 120.05023370914296 1167.6905636020056 0 0 0 0 0 0.5 0 0 0 P 0.67006 - 5 + NaN NaN 135914 NaN 20956 4859 25816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25818 101.4 NaN 96660 35 0 12121 0.261 + 4904 FAIPFAITI 9 45 496.7944549416234 NaN 0 496.7950134277344 PEAK HCD FTMS 0 0 0 25816 5789.19873046875 0.01124066671179008 26 -0.3559417724609375 2 Unmodified _FAIPFAITI_ ENSG00000170425|ENST00000304222|ADORA2B 21.74664581756881 0.17567436591797916 2 T{I|L} 2 7 18.271 0 0 1.8426 0 0 131.09516360249148 643.3223971002561 774.4175607027476 0 0 0 0 0 0.8807196863200843 0 0 0 + T{I|L} 1.8426 + + 9 + NaN NaN 119564.4 NaN 20957 4859 25816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25819 101.41 NaN 30039 35 0 4430.3 0.261 + 22244 QNVRKKKEKK 10 23 643.406113800729 1284.797674668258 2 643.406494140625 MULTI HCD FTMS 0 0 0 25816 10638.6787109375 0.22615404921361384 5 -0.07245635986328125 3 Unmodified _QNVRKKKEKK_ REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF 0.4007161486938917 0.47318265037741464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92040.9 NaN 20958 4859 25816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25820 101.41 NaN 107070 35 0 14273 0.263 + 33913 YLPSIVITL 9 45 509.8128860851919 1017.6112192371838 2 509.8128356933594 MULTI HCD FTMS 0 0 0 25816 3445.71044921875 0.026563927985016063 5 -0.07245635986328125 4 Unmodified _YLPSIVITL_ ENSG00000170537|ENST00000304381|TMC7;ENST00000568469.5_1_16:19049201-19056398:+|nuORF;nc|ENSG00000170537|Q7Z402-2|TMC7 14.838274106304384 0.23215694253501695 2 C(Carbamidomethyl (C))[{I|L}T]V{I|L} 5 6 31.466 0 0 3.0921 0 0 413.26915175605626 0 413.26915175605626 0 17.971062485323515 0 0 0 0.9247425010840047 0 0.3494850021680094 0 C(Carbamidomethyl (C))[{I|L}T]V{I|L} 3.0921 - 21 NaN NaN 104700.9 NaN 20959 4859 25816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25821 101.41 NaN 87867 35 0 11632 0.261 + 30105 VFWGNWAG 8 39 468.72317638485157 935.4317998365032 2 468.7232971191406 MULTI HCD FTMS 0 0 0 25816 14347.017578125 0.48752521027700574 1 -0.019378662109375 5 Unmodified _VFWGNWAG_ ENST00000599181.1_1_19:50865290-50865359:-|nuORF 0.7936320650641473 0.540814922690045 2 G 1 7 1.5938 0 0 0.17038 0 0 525.342823861697 350.0481356256469 875.3909594873439 0 0 0 0 0 0 0 0 0 + G 0.17038 + + 3 + NaN NaN 101923.4 NaN 20960 4859 25816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25823 101.42 NaN 88328 35 0 30776 0.411 + 34452 YPETLVNLIVL 11 40 637.3736551363623 1272.7327573395246 2 637.3853149414062 MULTI HCD FTMS 0 0 0 25822 23992.169921875 0.0114674156003568 60 -0.7153549194335938 1 Unmodified _YPETLVNLIVL_ ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;nc|ENSG00000105669|O14579-3|COPE 4.189502756095605 0.4005469306127019 2 V{I|L} 2 9 20.969 0 0 1.6476 0 0 1042.5722493894216 0 1042.5722493894216 0 16.989700043360187 0 0 0 0 0 0 0 + V{I|L} 1.6476 + + 4 NaN NaN 114729.6 NaN 20961 4860 25822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25825 101.43 NaN 753570 35 0 247310 0.327 + 6637 FPLSITLVL 9 52 501.8152576901558 1001.6159624471117 2 501.8155212402344 MULTI HCD FTMS 0 0 0 25824 518987.875 0.18179439816723145 12 -0.1783905029296875 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 77.98433622928108 0.006504613272346738 2 [{I|L}V]T{I|L}MT{I|L}V 8 5 62.868 0 0 6.2767 0 0 0 128.0725565070608 128.0725565070608 50.52545750413667 0 0 0 0 1.5 1.0969100130080565 1.274227503252014 0 [{I|L}V]T{I|L}MT{I|L}V 6.2767 - 82 NaN NaN 212257 NaN 20962 4861 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25826 101.43 NaN 111700 35 0 7463.2 0.261 -1 0 53 626.3796124125357 1250.7446718918713 2 626.3795776367188 MULTI HCD FTMS 0 0 0 25824 90401.6796875 0.4913872931489114 7 -0.11707305908203125 2 NaN NaN 2 {I|L} 1 -1 3.4949 0 0 0.27942 0 0 655.4395633765988 479.19733606510005 1134.636899441699 0 0 0 0 0 0 0 0 0 {I|L} 0.27942 - 2 + NaN NaN 110884.1 NaN 20963 4861 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25827 101.44 NaN 284170 35 0 36927 0.262 -1 0 61 528.8090376355323 1055.6035223378644 2 528.8092651367188 MULTI HCD FTMS 0 0 0 25824 60099.09375 0.6693389699448106 7 -0.11707305908203125 3 NaN NaN 2 [YV]AV 4 -1 49.693 0 0 4.7075 0 0 0 620.3418428228443 620.3418428228443 24.47621246364342 0 0 0 0 1.3494850021680094 2 0 0 [YV]AV 4.7075 - 43 + NaN NaN 132097.5 NaN 20964 4861 25824 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25829 101.44 NaN 758480 35 0 175380 0.327 + 31435 VYAVPILIF 9 48 517.8179256550326 1033.621298376865 2 517.8180541992188 MULTI HCD FTMS 0 0 0 25828 335337.28125 0.5320333277142603 4 -0.07175445556640625 1 Unmodified _VYAVPILIF_ ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 79.93452657146344 0.0058735632865073864 2 [YV]AV[{I|L}P]{I|L}{I|L}{M(Oxidation (M))|F} 9 0 + 62.157 0 0 6.0136 6.0136 93.457 0 0 0 0 0 0 62.15735931149851 0 2.805462187404089 0 0 0 + + [YV]AV[{I|L}P]{I|L}{I|L}{M(Oxidation (M))|F} 6.0136 + + 102 + NaN NaN 198605.9 NaN 20965 4862 25828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25830 101.44 NaN 51361 35 0 7988.9 0.261 + 2005 DCCIPELL 8 29 453.20950337943293 NaN 0 453.2090759277344 PEAK HCD FTMS 0 0 0 25828 36155.703125 0.6533385746147443 -75 1.2301254272460938 2 Unmodified _DCCIPELL_ REV__ENSG00000212900|ENST00000391587|KRTAP3-2 2.577480529830294 0.38822285293237185 2 T 1 -1 3.9794 0 0 0.44 0 0 595.2822136907034 205.04844080142814 800.3306544921315 0 0 0 0 0 0 0 0 0 T 0.44 - 2 + NaN NaN 111884.7 NaN 20966 4862 25828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25831 101.45 NaN 161340 35 0 15378 0.261 + 29636 VAPIIFLTI 9 44 493.8177769617074 985.6210009902148 2 493.8184814453125 MULTI HCD FTMS 0 0 0 25828 16772.298828125 0.11605355291774223 -11 0.1578369140625 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 24.67388899826682 0.14717941214954053 2 T{I|L} 2 -1 29.776 0 0 3.0211 0 0 753.4778373856775 0 753.4778373856775 0 19.599009323677095 0 0 0 0.5 0 0.3807196863200844 0 T{I|L} 3.0211 + + 40 NaN NaN 124905.1 NaN 20967 4862 25828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25832 101.45 NaN 101400 35 0 15399 0.261 -1 0 29 555.8167727488469 1109.6189925644937 2 555.8165283203125 MULTI HCD FTMS 0 0 0 25828 29844.451171875 0.05446206247604153 -28 0.4522247314453125 4 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3404 0 0 831.4550104228846 0 831.4550104228846 0 17.01667520279372 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3404 - 6 NaN NaN 114115.3 NaN 20968 4862 25828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25833 101.45 NaN 84442 35 0 10724 0.261 + 7697 FYLISPLDF 9 36 557.7948012295378 1113.5750495258756 2 557.794921875 MULTI HCD FTMS 0 0 0 25828 12207.650390625 0.4781170426235407 -7 0.09291839599609375 5 Unmodified _FYLISPLDF_ ENSG00000120925|ENST00000527424|RNF170;nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170 10.823927491677226 0.26684000660059787 2 N{M(Oxidation (M))|F} 2 8 17.959 0 0 1.6127 0 0 834.4683094709 0 834.4683094709 0 4.859856381998782 0 0 0 0 0 0 0 N{M(Oxidation (M))|F} 1.6127 - 6 NaN NaN 101553 NaN 20969 4862 25828 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25835 101.46 NaN 368430 35 0 100860 0.327 + 18490 MRESTHLYLF 10 49 432.885229636791 NaN 0 432.88519287109375 PEAK HCD FTMS 0 0 0 25834 120399.6015625 0.6049032446773268 64 -0.78326416015625 1 Unmodified _MRESTHLYLF_ REV__ENSG00000110046|ENST00000377264|ATG2A;REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A 0.776531954647913 0.3395196853010637 2 T 1 -1 1.1092 0 0 0.12842 0 0 595.6470023870602 164.03853784732658 759.6855402343867 0 0 0 0 0 0 0 0 0 T 0.12842 + + 2 + NaN NaN 145272.9 NaN 20970 4863 25834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25836 101.46 NaN 94025 35 0 36898 0.261 + 7507 FWLFAWFA 8 30 544.2735210046025 1086.5324890760048 2 544.2738647460938 MULTI HCD FTMS 0 0 0 25834 33236.7734375 0.716403074113993 5 -0.08473968505859375 2 Unmodified _FWLFAWFA_ REV__ENSG00000100321|ENST00000328933|SYNGR1;REV__nc|ENSG00000100321|O43759-2|SYNGR1;REV__nc|ENSG00000100321|O43759-3|SYNGR1 0.7936320650641473 0.540814922690045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 104456.9 NaN 20971 4863 25834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25837 101.47 NaN 52134 35 0 9158.3 0.261 + 28166 TKIGSLFSRN 10 30 561.8179321289062 NaN 0 561.8179321289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _TKIGSLFSRN_ REV__ENSG00000133454|ENST00000335473|MYO18B;REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B;REV__nc|ENSG00000133454|Q8IUG5-3|MYO18B 2.498486711656943 0.3380459306859131 2 M 1 -1 5.4846 0 0 0.48944 0 0 648.3169628888687 338.2076815240844 986.5246444129532 0 0 0 0 0 0 0 0 0 M 0.48944 - 1 + NaN NaN 111458.6 NaN 20972 4863 25834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25839 101.47 NaN 425890 35 0 58362 0.327 + 6603 FPLPAARRP 9 61 512.8063287531803 1023.5981045731606 2 512.806640625 MULTI HCD FTMS 0 0 0 25838 149880.890625 0.19627848760191574 15 -0.21021270751953125 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 21.74664581756881 0.17247014374749275 2 {I|L}T{I|L}S{I|L}PE 7 -1 56.318 0 0 5.502 0 0 252.14483840156407 0 252.14483840156407 0 27.818204259575978 0 0 0 1.274227503252014 0 0 0 {I|L}T{I|L}S{I|L}PE 5.502 - 206 NaN NaN 150949 NaN 20973 4864 25838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25840 101.48 NaN 61006 35 0 11835 0.261 + 23802 RRQIRGRKAQ 10 37 634.89299318115 1267.7714334291 2 634.8931884765625 MULTI HCD FTMS 0 0 0 25838 60768.359375 0.4507244934039456 12 -0.18255615234375 2 Unmodified _RRQIRGRKAQ_ REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF 0.6268255596534771 0.47198581731947004 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107939.1 NaN 20974 4864 25838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25841 101.48 NaN 69545 35 0 10884 0.262 + 7013 FPYGLFELV 9 31 542.7892520370605 1083.5639511409208 2 542.7894287109375 MULTI HCD FTMS 0 0 0 25838 25436.603515625 0.6425728073379032 1 -0.019622802734375 3 Unmodified _FPYGLFELV_ ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}V 2 7 20.969 0 0 1.9352 0 0 853.3990539641351 0 853.3990539641351 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}V 1.9352 + + 1 NaN NaN 120348.2 NaN 20975 4864 25838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25842 101.48 NaN 45838 35 0 6358.4 0.261 + 35549 YYGPLNLLTF 10 34 600.8187033270344 1199.6228537208688 2 600.8189697265625 MULTI HCD FTMS 0 0 0 25838 18683.705078125 0.5565663794252029 1 -0.019622802734375 4 Unmodified _YYGPLNLLTF_ ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF 12.240655878213236 0.39661705172222156 2 {I|L}T{M(Oxidation (M))|F} 3 7 31.198 0 0 2.6006 0 0 820.4042835919937 0 820.4042835919937 0 28.723637474483468 0 0 0 0.5 0 0 0 + {I|L}T{M(Oxidation (M))|F} 2.6006 + + 6 NaN NaN 97653.8 NaN 20976 4864 25838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25843 101.49 NaN 82645 35 0 35491 0.261 + 10243 IILFIAIRWE 10 27 637.386218252617 NaN 0 637.3726196289062 PEAK HCD FTMS 0 0 0 25838 23998.279296875 0.6671534753054612 -11 0.164398193359375 5 Unmodified _IILFIAIRWE_ REV__tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1 0.45834013312273997 0.33979201340002624 2 V 1 -1 6.9897 0 0 0.54918 0 0 131.12124869923383 1039.544457620667 1170.6657063199007 0 0 0 0 0 0 0 0 0 V 0.54918 - 1 + NaN NaN 114727.9 NaN 20977 4864 25838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25845 101.49 NaN 170880 35 0 9977.9 0.326 + 29165 TYIPPLLVAF 10 51 567.3338459008424 1132.6531388684848 2 567.334228515625 MULTI HCD FTMS 0 0 0 25844 9792.1845703125 0.04450919015266366 25 -0.308074951171875 1 Unmodified _TYIPPLLVAF_ ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF 36.12702656103203 0.1790159924230938 2 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F} 7 5 40.494 0 0 3.5752 0 0 311.1527249053973 0 311.1527249053973 0 22.535466487905538 0 0 0 2.004432191740108 0 0 0 {I|L}{I|L}{M(Oxidation (M))|F}{I|L}VA{M(Oxidation (M))|F} 3.5752 - 175 + NaN NaN 109922.1 NaN 20978 4865 25844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25846 101.5 NaN 80732 35 0 4584 0.261 -1 0 45 539.985004553399 1616.933184260397 3 539.98388671875 MULTI HCD FTMS 0 0 0 25844 33465.94921875 0.6040568690144503 -15 0.2329559326171875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 105117.2 NaN 20979 4865 25844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25847 101.5 NaN 43773 35 0 3435.3 0.261 -1 0 35 545.6606209861354 1633.960033558606 3 545.9950561523438 MULTI HCD FTMS 0 0 0 25844 15949.501953125 0.4723306274193067 2 -0.0358734130859375 3 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}K 3 -1 7.4473 0 0 0.45578 0 0 0 1260.7189501447967 1260.7189501447967 7.447274948966937 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}K 0.45578 - 3 NaN NaN 101215 NaN 20980 4865 25844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25848 101.5 NaN 55515 35 0 4634.8 0.261 + 25499 SFFVFGVYV 9 37 532.7758876954518 1063.5372224577036 2 532.7958984375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _SFFVFGVYV_ REV__ENSG00000170419|ENST00000402613|VSTM2A;REV__nc|ENSG00000170419|Q8TAG5-2|VSTM2A;REV__nc|ENSG00000170419|Q8TAG5|VSTM2A 4.3292370932331545 0.3181982124262546 2 MC 2 -1 20.969 0 0 1.9716 0 0 0 826.4517390514642 826.4517390514642 17.47425010840047 0 0 0 0 0 0 0 0 MC 1.9716 - 7 + NaN NaN 102163.7 NaN 20981 4865 25844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25849 101.51 NaN 41094 35 0 3924.8 0.261 + -1 LPGCRRNKC 9 31 580.7919311523438 NaN 0 580.7919311523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 2 Carbamidomethyl (C) _LPGC(Carbamidomethyl (C))RRNKC(Carbamidomethyl (C))_ REV__ENSG00000122863|ENST00000373115|CHST3 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113030.2 NaN 20982 4865 25844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25851 101.51 NaN 84242 35 0 9998.4 0.327 + 13629 KYPENFFLL 9 34 585.8131546144109 1169.6117562956217 2 585.8134765625 MULTI HCD FTMS 0 0 0 25850 39015.171875 0.627476804668562 -1 0.0195770263671875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4338527973619 0 925.4338527973619 0 20.76728783671072 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 21 NaN NaN 99970.2 NaN 20983 4866 25850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25852 101.52 NaN 99694 35 0 14245 0.261 + -1 SGCCCRCCC 9 37 583.1605820902255 NaN 0 582.7733154296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 4 Carbamidomethyl (C) _SGC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))RC(Carbamidomethyl (C))CC_ REV__ENST00000339007.3_1_19:18507709-18507796:-|nuORF;REV__ENST00000595840.1_1_19:18507709-18508276:-|nuORF 0 0.29524684227089293 2 M 1 -1 3.9794 0 0 0.34178 0 0 617.9583579286947 412.28513513736567 1030.2434930660604 0 0 0 0 0 0 0 0 0 M 0.34178 - 1 + NaN NaN 106805.2 NaN 20984 4866 25850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25853 101.52 NaN 34404 35 0 5909.7 0.261 + -1 RIILLFFMI 9 28 591.3589231042068 NaN 0 590.9322509765625 PEAK HCD FTMS 0 0 0 25850 19888.47265625 0.9901342436345827 -3 0.0521697998046875 3 Oxidation (M) _RIILLFFM(Oxidation (M))I_ REV__nc|ENSG00000068878|Q14997-3|PSME4 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96074 NaN 20985 4866 25850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25854 101.52 NaN 38129 35 0 5265.1 0.261 + 30219 VILFRMRK 8 30 531.8353223608906 NaN 0 531.83544921875 PEAK HCD FTMS 0 0 0 25850 9033.53515625 0.3813010569111924 -10 0.14176177978515625 4 Unmodified _VILFRMRK_ ENST00000461221.5_1_17:41245833-41245896:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95611.8 NaN 20986 4866 25850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25856 101.53 NaN 93615 35 0 5033.6 0.327 -1 0 48 539.985004553399 1616.933184260397 3 539.9852905273438 MULTI HCD FTMS 0 0 0 25855 42335.03125 0.7641428683031717 -13 0.1938629150390625 1 NaN NaN 2 K 1 -1 3.4949 0 0 0.21614 0 0 962.5628362152783 523.2655123346311 1485.8283485499094 0 0 0 0 0 0 0 0 0 K 0.21614 - 3 + NaN NaN 105269.8 NaN 20987 4867 25855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25857 101.53 NaN 280880 35 0 38491 0.261 -1 0 51 528.4105805063551 527.4033040397551 1 528.4102783203125 MULTI HCD FTMS 0 0 0 25855 20215.98046875 0.35106282959045654 4 -0.0551605224609375 2 NaN NaN 2 P{M(Oxidation (M))|F} 2 -1 14.693 0 0 2.7859 0 0 265.2716034555738 0 265.2716034555738 0 14.69273760456403 0 0 0 0 0 0 0 P{M(Oxidation (M))|F} 2.7859 - 8 + NaN NaN 126624.6 NaN 20988 4867 25855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25858 101.54 NaN 43306 35 0 4711.5 0.261 + 24283 RYFLPPYTF 9 30 602.3134063759486 NaN 0 602.3126220703125 PEAK HCD FTMS 0 0 0 25855 12923.2939453125 0.664331370578191 1 -0.01627349853515625 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.723162845929126 0.26266733336404485 2 {M(Oxidation (M))|F}{I|L} 2 7 10.969 0 0 0.91211 0 0 619.2425221251409 320.1968172662719 939.4393393914129 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L} 0.91211 + + 3 + NaN NaN 109176.3 NaN 20989 4867 25855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25859 101.54 NaN 57578 35 0 9188.6 0.261 -1 IYIPLFLPM 9 32 561.8176879882812 NaN 0 561.8176879882812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _IYIPLFLPM(Oxidation (M))_ ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS 5.230669730166228 0.26989974671959066 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98591.6 NaN 20990 4867 25855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25861 101.54 NaN 118310 35 0 15154 0.327 -1 DYMNLLGMIF 10 36 624.7851990701316 1247.5558452070632 2 624.7861938476562 MULTI HCD FTMS 0 0 0 25860 87281.5859375 0.6480599577289263 -30 0.5074996948242188 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 20.41453444215458 0.3201613495159799 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 32.218 0 0 2.5825 0 0 652.2511642186495 0 652.2511642186495 0 32.21848749616356 0 0 0 1 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.5825 + + 11 NaN NaN 103993.8 NaN 20991 4868 25860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25862 101.55 NaN 37268 35 0 6249.2 0.261 -1 0 27 603.3949257510831 602.387649284483 1 603.3953857421875 MULTI HCD FTMS 0 0 0 25860 37429.3203125 0.32289652685691755 -32 0.5240402221679688 2 NaN NaN 2 W{NN|[MP]|[D{I|L}]|[EV]} 3 -1 8.072 0 0 1.34 0 0 170.18621603428613 0 170.18621603428613 0 8.071968632008437 0 0 0 0 0 0 0 W{NN|[MP]|[D{I|L}]|[EV]} 1.34 - 3 + NaN NaN 96874.4 NaN 20992 4868 25860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25863 101.55 NaN 72827 35 0 4735.1 0.261 + 16913 LYGFFFASL 9 45 532.7758876954518 1063.5372224577036 2 532.805908203125 MULTI HCD FTMS 0 0 0 25860 11975.8701171875 0.24297826708754688 -4 0.07176971435546875 3 Unmodified _LYGFFFASL_ ENSG00000102384|ENST00000682095|CENPI;nc|ENSG00000102384|Q92674-2|CENPI 16.942295170755138 0.21397866736869717 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 7 24.464 0 0 2.3002 0 0 289.16382265477233 477.21381555728755 766.3776382120599 0 0 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.3002 + + 17 + NaN NaN 96254.8 NaN 20993 4868 25860 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25865 101.56 NaN 471150 35 0 156660 0.327 + 6638 FPLSITLVL 9 37 501.815234768815 1001.61591660443 2 501.8154602050781 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 60.38955033654506 0.017036522530421875 2 MT{I|L}V{I|L} 5 5 57.691 0 0 5.7598 0 0 426.28331191230626 0 426.28331191230626 0 50.70107520596089 0 0 0 1.4247425010840047 0 0.8494850021680094 0 MT{I|L}V{I|L} 5.7598 - 39 NaN NaN 163137.8 NaN 20994 4869 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25866 101.56 NaN 197360 35 0 28487 0.261 -1 YVRTAWML 8 54 528.2709872400263 1054.5274215468526 2 528.27099609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _YVRTAWM(Oxidation (M))L_ ENST00000273610.3_1_3:48599595-48600222:-|nuORF 5.230669730166228 0.5342319408533849 2 [YV]A 3 -1 24.437 0 0 2.3173 0 0 0 718.3354103986682 718.3354103986682 9.832881222565248 0 0 0 0 0 2 0 0 [YV]A 2.3173 - 22 NaN NaN 129577.3 NaN 20995 4869 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25867 101.57 NaN 42160 35 0 3797.2 0.261 + 11760 KDRDMDLT 8 32 497.23620564082944 NaN 0 497.2363586425781 PEAK HCD FTMS 0 0 0 25864 15305.9140625 0.578601123116836 20 -0.22710418701171875 3 Unmodified _KDRDMDLT_ CTNND1|p.A463D|1|0.34|ENSG00000198561|chr11:57802164-57802164|C/A|missense_variant 2.0597508629832335 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102165.6 NaN 20996 4869 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25868 101.57 NaN 100450 35 0 8529 0.261 + 7698 FYLISPLDF 9 44 557.7948012295378 1113.5750495258756 2 557.7951049804688 MULTI HCD FTMS 0 0 0 25864 25532.765625 1 0 0 4 Unmodified _FYLISPLDF_ ENSG00000120925|ENST00000527424|RNF170;nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170 15.847184025352803 0.2234401846867398 2 S[DP]{I|L}{M(Oxidation (M))|F} 5 6 17.76 0 0 1.5948 0 0 536.3000201946929 0 536.3000201946929 0 10.769921747127498 0 0 0 0.8807196863200843 0 0 0 S[DP]{I|L}{M(Oxidation (M))|F} 1.5948 - 29 + NaN NaN 117849 NaN 20997 4869 25864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25870 101.57 NaN 155120 35 0 18961 0.327 + 13851 KYPSPFFVF 9 50 566.2974310216092 NaN 0 566.296875 PEAK HCD FTMS 0 0 0 25869 25853.337890625 0.5248075045015528 -34 0.5532684326171875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.1998403495282098 2 V 1 8 13.099 0 0 1.1586 0 0 165.07899306861253 863.4091575813518 1028.4881506499644 0 0 0 0 0 0.8494850021680094 0 0 0 + V 1.1586 + + 26 + NaN NaN 109247.5 NaN 20998 4870 25869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25871 101.58 NaN 84545 35 0 36728 0.261 + 21387 PVHPVYPPRVL 11 33 637.372927178982 NaN 0 637.3856811523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PVHPVYPPRVL_ ENST00000381168.7_1_11:2187868-2190906:-|nuORF 2.9952420565917617 0.33362350433860827 2 V 1 10 6.9897 0 0 0.54919 0 0 131.09508619453533 1039.5453182303243 1170.6404044248595 0 0 0 0 0 0 0 0 0 + V 0.54919 + + 2 + NaN NaN 116887.5 NaN 20999 4870 25869 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25873 101.58 NaN 697220 35 0 166660 0.327 -1 0 42 555.8167727488469 1109.6189925644937 2 555.8170166015625 MULTI HCD FTMS 0 0 0 25872 256314.953125 0.46773991286502836 -19 0.288116455078125 1 NaN NaN 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 -1 48.333 0 0 4.3558 0 0 423.18245131660314 0 423.18245131660314 0 47.36371556024956 0 0 0 2.2302046884880937 0 0 0 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.3558 - 34 NaN NaN 194307.8 NaN 21000 4871 25872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25874 101.59 NaN 114220 35 0 23302 0.263 -1 KKCHQCVETI 10 44 434.88215491200685 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 25872 55634.203125 0.3992469161315382 110 -1.3714828491210938 2 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117714.6 NaN 21001 4871 25872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25875 101.59 NaN 125130 35 0 14441 0.261 + 29637 VAPIIFLTI 9 49 493.8177769617074 985.6210009902148 2 494.3196716308594 MULTI HCD FTMS 0 0 0 25872 25677.91796875 0.34451385975087007 -5 0.0714569091796875 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 16.942295170755138 0.21397866736869717 2 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.478715366931 0 753.478715366931 0 19.7370154245451 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 20 NaN NaN 102644.1 NaN 21002 4871 25872 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25877 101.6 NaN 146250 35 0 19985 0.327 + 6604 FPLPAARRP 9 41 512.8062271942915 1023.5979014553831 2 512.806640625 MULTI HCD FTMS 0 0 0 25876 168143.578125 0.45631271539417967 -1 0.012786865234375 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 21.74664581756881 0.17247014374749275 2 T{I|L}S{I|L}PE 6 -1 50.38 0 0 4.9219 0 0 365.2281666486344 0 365.2281666486344 0 29.41122510072759 0 0 0 1.25 0 0 0 T{I|L}S{I|L}PE 4.9219 - 63 NaN NaN 109067.9 NaN 21003 4872 25876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25878 101.6 NaN 150030 35 0 11752 0.261 + 29638 VAPIIFLTI 9 47 493.8177769617074 985.6210009902148 2 493.8184509277344 MULTI HCD FTMS 0 0 0 25876 68348.8984375 0.47293054953114855 -1 0.012786865234375 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 30.224811164608877 0.11021837014094292 2 {I|L}T{I|L} 3 -1 39.253 0 0 3.9825 0 0 640.3973255841812 0 640.3973255841812 0 33.767959391884546 0 0 0 0.8807196863200843 0 0.4247425010840047 0 {I|L}T{I|L} 3.9825 + + 17 NaN NaN 135342.5 NaN 21004 4872 25876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25880 101.61 NaN 233780 35 0 43288 0.327 + 32710 WPLPPDWPLP 10 45 609.3210374800407 1216.6275220268813 2 609.32177734375 MULTI HCD FTMS 0 0 0 25879 65525.328125 0.6342775252773514 -3 0.0320892333984375 1 Unmodified _WPLPPDWPLP_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 9.38312468134398 0.42334543440173333 2 WP{I|L}P 4 6 34.68 0 0 2.8505 0 0 705.34672743965 0 705.34672743965 0 30.07638152291939 0 0 0 0.4247425010840047 0 0 0 + WP{I|L}P 2.8505 + + 11 NaN NaN 125754 NaN 21005 4873 25879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25881 101.61 NaN 194610 35 0 26874 0.261 + 21482 PYFERLLKEA 10 40 633.3456126389681 NaN 0 633.361083984375 PEAK HCD FTMS 0 0 0 25879 11052.9326171875 0.6511499799676307 -7 0.0938873291015625 2 Unmodified _PYFERLLKEA_ REV__ENSG00000168026|ENST00000683103|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-5|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-7|TTC21A;REV__nc|ENSG00000168026|Q8NDW8|TTC21A 12.240655878213236 0.32970798410958835 2 V{I|L}{I|L} 3 -1 12.307 0 0 0.97314 0 0 593.2598155105549 343.1611727350219 936.4209882455768 0 0 0 0 0 0 0 0 0 V{I|L}{I|L} 0.97314 - 37 + NaN NaN 117239 NaN 21006 4873 25879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25882 101.61 NaN 146330 35 0 29215 0.261 -1 CCKGFCIDIL 10 39 586.2687221499096 1170.5228913666192 2 586.2692260742188 MULTI HCD FTMS 0 0 0 25879 56420.2265625 0.7125450767981658 -3 0.0320892333984375 3 Carbamidomethyl (C) _CCKGFC(Carbamidomethyl (C))IDIL_ ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000183454|Q12879-2|GRIN2A 12.240655878213236 0.39661705172222156 2 {[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L} 9 -1 + 46.348 0 0 3.9596 3.9596 82.208 0 0 0 3.0102999566398125 14.973024840566467 3.0102999566398125 3.0102999566398125 0 1.3494850021680094 0 0 0 {[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L};[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}Q{I|L};{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}[AG]{I|L};[{M(Oxidation (M))|F}E]D{M(Oxidation (M))|F}[EP]{M(Oxidation (M))|F}[AG]{I|L};{[{M(Oxidation (M))|F}D]|MM}E[K{I|L}]{M(Oxidation (M))|F}V[C(Carbamidomethyl (C))N];{[{M(Oxidation (M))|F}D]|MM}E{M(Oxidation (M))|F}[K{I|L}]V[C(Carbamidomethyl (C))N] 3.9596;3.7024;3.1729;2.9158;1.632;1.632 -;-;-;-;-;- 105 NaN NaN 104319.9 NaN 21007 4873 25879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25883 101.62 NaN 72036 35 0 10152 0.261 + 16358 LRYNFHPSL 9 35 573.8054079501509 1145.5962629671017 2 573.8041381835938 MULTI HCD FTMS 0 0 0 25879 75578.359375 0.399481559279799 -8 0.11346435546875 4 Unmodified _LRYNFHPSL_ ENSG00000165152|ENST00000374848|PGAP4 10.073929032068715 0.27331982688540024 2 S{I|L} 2 7 25.969 0 0 2.2669 0 0 927.468947966598 0 927.468947966598 0 20.48455006504028 0 0 0 0.5 0 0 0 + S{I|L} 2.2669 + + 5 NaN NaN 93845.5 NaN 21008 4873 25879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25884 101.62 NaN 128260 35 0 13705 0.261 + 259 AFILGSGLLSF 11 55 562.8213131840627 1123.6280734349252 2 562.8223876953125 MULTI HCD FTMS 0 0 0 25879 59688.3125 0.7809809600660431 -8 0.11346435546875 5 Unmodified _AFILGSGLLSF_ ENSG00000170271|ENST00000326080|FAXDC2;ENST00000423554.5_1_5:154202945-154230090:-|nuORF;ENST00000517448.5_1_5:154210261-154230090:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2 57.72198328787511 0.049708710636685256 2 {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}GS{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F} 11 0 + 68.733 0 0 6.1171 6.1171 92.851 0 0 0 4.981979378655865 67.62388875519466 4.981979378655865 37.54487332185849 0 2.3807196863200843 0 0.4247425010840047 0 + + {[MS]|[{M(Oxidation (M))|F}A]}{I|L}{I|L}GS{[VA]|[{I|L}G]}{I|L}S{M(Oxidation (M))|F};{[MS]|[{M(Oxidation (M))|F}A]}{I|L}{[NV]|[RG]}[{I|L}T]{I|L}S{M(Oxidation (M))|F} 6.1171;2.7757 +;- + 78 NaN NaN 108708.7 NaN 21009 4873 25879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25886 101.63 NaN 155140 35 0 27872 0.326 -1 MIKFMFILI 9 43 594.3316228180194 1186.6486927028386 2 594.33154296875 MULTI HCD FTMS 0 0 0 25885 76985.2734375 0.4194172781217408 -2 0.029083251953125 1 2 Oxidation (M) _M(Oxidation (M))IKFM(Oxidation (M))FILI_ ENST00000239231.6_1_5:167978076-167978319:-|nuORF 11.640296217721598 0.25978676193971967 2 {I|L}{I|L}{I|L} 3 -1 35.005 0 0 2.9499 0 0 829.3840604193464 0 829.3840604193464 0 35.00508444608478 0 0 0 0.8807196863200843 0 0 0 {I|L}{I|L}{I|L} 2.9499 + + 8 NaN NaN 108735.3 NaN 21010 4874 25885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25887 101.63 NaN 222160 35 0 10839 0.261 + 14255 LCIFMFVLF 9 63 566.7983220336326 NaN 0 566.8086547851562 PEAK HCD FTMS 0 0 0 25885 11230.2177734375 0.5562443842246728 5 -0.05768585205078125 2 Unmodified _LCIFMFVLF_ ENSG00000112394|ENST00000368851|SLC16A10;ENST00000368850.4_3_6:111498427-111514516:+|nuORF 20.871210003555333 0.18155047927120396 2 {I|L} 1 8 15.485 0 0 1.3684 0 0 165.07887465644689 850.3964581597089 1015.4753328161557 0 0 0 0 0 1 0 0 0 + {I|L} 1.3684 + + 106 NaN NaN 121070.6 NaN 21011 4874 25885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25888 101.63 NaN 75430 35 0 5846.4 0.261 + 16914 LYGFFFASL 9 41 532.7758876954518 1063.5372224577036 2 532.7761840820312 MULTI HCD FTMS 0 0 0 25885 21313.298828125 0.4324252321127421 1 -0.0229339599609375 3 Unmodified _LYGFFFASL_ ENSG00000102384|ENST00000682095|CENPI;nc|ENSG00000102384|Q92674-2|CENPI 23.1484247019978 0.1603590852062899 2 C{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{[TV]|[{I|L}S]} 6 4 37.396 0 0 3.5162 0 0 377.23094374824376 0 377.23094374824376 0 30.406075122407685 0 0 0 1.3494850021680094 0 0 0 C{M(Oxidation (M))|F}{M(Oxidation (M))|F}A{[TV]|[{I|L}S]} 3.5162 - 31 NaN NaN 100946.5 NaN 21012 4874 25885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25889 101.64 NaN 81234 35 0 17125 0.261 + -1 LVCIMVLMF 9 35 579.2930665657956 NaN 0 579.2919311523438 PEAK HCD FTMS 0 0 0 25885 31775.076171875 0.6575252282183569 -4 0.0515289306640625 4 Carbamidomethyl (C),2 Oxidation (M) _LVC(Carbamidomethyl (C))IM(Oxidation (M))VLM(Oxidation (M))F_ REV__ENSG00000130943|ENST00000253255|PKDREJ 2.302733041254933 0.2840881193086663 2 V 1 -1 5.4846 0 0 0.47421 0 0 425.1864616454598 629.2907808893186 1054.4772425347785 0 0 0 0 0 0 0 0 0 V 0.47421 + + 1 + NaN NaN 101104.4 NaN 21013 4874 25885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25890 101.64 NaN 25689 35 0 2965.3 0.261 + 23731 RRAIFVFWI 9 24 604.3577108750619 1206.7008688169237 2 605.3246459960938 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RRAIFVFWI_ ENSG00000112706|ENST00000369950|IMPG1;IMPG1|p.R517Dfs*13|1|0.48|ENSG00000112706|chr6:75950837-75950838|-/GACCATATCTTCGCCACCTGCACTTGATC|frameshift_variant;nc|ENSG00000112706|Q17R60-2|IMPG1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96877.3 NaN 21014 4874 25885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25891 101.64 NaN 48935 35 0 5749.2 0.262 + 30505 VMKVCLMR 8 34 490.26526600550864 NaN 0 490.26519775390625 PEAK HCD FTMS 0 0 0 25885 3746.252685546875 0.28944619882948275 1 -0.0229339599609375 6 Unmodified _VMKVCLMR_ REV__ENSG00000165202|ENST00000297913|OR1Q1 2.302733041254933 0.38822285293237185 2 V 1 -1 5.4846 0 0 0.5605 0 0 358.2014782006673 518.2237032525999 876.4251814532672 0 0 0 0 0 0 0 0 0 V 0.5605 + + 4 + NaN NaN 93505.3 NaN 21015 4874 25885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25893 101.65 NaN 37571 35 0 5323.7 0.326 + 21322 PSNPECLLLV 10 24 542.7892520370605 1083.5639511409208 2 542.7899780273438 MULTI HCD FTMS 0 0 0 25892 10638.3212890625 0.2687424825360969 12 -0.12284088134765625 1 Unmodified _PSNPECLLLV_ ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;nc|ENSG00000158019|Q9NXR7-4|BABAM2 4.897010918128616 0.4493830473644964 2 {I|L}V 2 8 20.969 0 0 1.9352 0 0 853.4052601544937 0 853.4052601544937 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}V 1.9352 + + 1 NaN NaN 115315.3 NaN 21016 4875 25892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25895 101.66 NaN 101560 35 0 4692.7 0.412 -1 0 65 539.985004553399 1616.933184260397 3 540.3197631835938 MULTI HCD FTMS 0 0 0 25894 55309.48046875 1 0 0 1 NaN NaN 2 {I|L} 1 -1 3.9794 0 0 0.24611 0 0 703.4872136566845 797.3397310846311 1500.8269447413156 0 0 0 0 0 0 0 0 0 {I|L} 0.24611 - 4 + NaN NaN 137319.7 NaN 21017 4876 25894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25897 101.66 NaN 179960 35 0 38493 0.327 + 2395 DPILDFNISL 10 41 573.8054079501509 1145.5962629671017 2 573.8056030273438 MULTI HCD FTMS 0 0 0 25896 54195.578125 0.28645943408248487 -4 0.0567779541015625 1 Unmodified _DPILDFNISL_ ENSG00000109062|ENST00000262613|NHERF1;nc|ENSG00000109062|O14745-2|NHERF1 31.635753872319068 0.2179907440432224 2 D{M(Oxidation (M))|F}N{I|L}S{I|L} 6 4 56.005 0 0 4.8887 0 0 438.24608046699376 0 438.24608046699376 0 45.03591878376909 0 0 0 1.586696871556164 0 0.4247425010840047 0 + D{M(Oxidation (M))|F}N{I|L}S{I|L} 4.8887 + + 75 NaN NaN 130632 NaN 21018 4877 25896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25898 101.67 NaN 170750 35 0 24979 0.261 -1 DYMNLLGMIF 10 37 624.7851990701316 1247.5558452070632 2 624.785400390625 MULTI HCD FTMS 0 0 0 25896 71164.3984375 0.5283909148515605 -21 0.29242706298828125 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 32.78568957990786 0.20801173326193015 2 {I|L}G{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 5 -1 40.401 0 0 3.2384 0 0 652.2513093576887 0 652.2513093576887 0 35.79689690656103 0 0 0 1.8182503180159344 0 0 0 {I|L}G{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.2384 + + 34 NaN NaN 113521.1 NaN 21019 4877 25896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25899 101.67 NaN 37189 35 0 5447.7 0.261 -1 0 33 545.6606209861354 1633.960033558606 3 545.9942016601562 MULTI HCD FTMS 0 0 0 25896 20567.47265625 0.6090878130682067 14 -0.150787353515625 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110931.9 NaN 21020 4877 25896 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25901 101.68 NaN 418720 35 0 70503 0.411 + 11408 IYPPLLGALSF 11 74 595.8446884102052 1189.6748238872103 2 595.8450927734375 MULTI HCD FTMS 0 0 0 25900 181056.65625 0.32224206065376426 -20 0.28271484375 1 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 107.1870275148908 0.020425737533791625 2 [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 79.97 0 0 6.722 6.722 86.576 0 0 0 3.8341720226343625 3.8341720226343625 3.8341720226343625 3.393270011618597 0 3.1223637474483468 1.5228787452803376 0.6307196863200843 0 + + [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}GAA[Y{I|L}];[Y{I|L}]PP{I|L}{I|L}QA[Y{I|L}] 6.722;6.4368;4.0688;3.6438 +;-;-;- + 279 + NaN NaN 216505.3 NaN 21021 4878 25900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25903 101.69 NaN 352610 35 0 119970 0.264 + 6639 FPLSITLVL 9 38 501.815234768815 1001.61591660443 2 501.8153991699219 MULTI HCD FTMS 0 0 0 25902 348025.5625 0.2041089973420128 6 -0.073272705078125 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 48.345845343767074 0.03388484103555672 2 MT{I|L}V{I|L} 5 5 54.949 0 0 5.486 0 0 426.2835865705094 0 426.2835865705094 0 47.95880017344075 0 0 0 1 0 0.8494850021680094 0 MT{I|L}V{I|L} 5.486 - 35 NaN NaN 141877.8 NaN 21022 4879 25902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25904 101.69 NaN 210230 35 0 37890 0.261 + 32518 WGLWAFYL 8 45 528.2709872400263 1054.5274215468526 2 528.27099609375 MULTI HCD FTMS 0 0 0 25902 30903.154296875 0.18980202999114903 6 -0.073272705078125 2 Unmodified _WGLWAFYL_ REV__ENSG00000134343|ENST00000256737|ANO3;REV__ENSG00000151572|ENST00000392977|ANO4;REV__ENST00000529242.1_1_11:26563580-26584615:+|nuORF;REV__nc|ENSG00000134343|Q9BYT9-2|ANO3;REV__nc|ENSG00000151572|Q32M45-2|ANO4 2.8892196856762586 0.5377058178582064 2 V{I|L} 2 -1 14.949 0 0 1.4176 0 0 824.3608265607437 0 824.3608265607437 0 6.876531584792501 0 0 0 0 0 0 0 V{I|L} 1.4176 - 5 NaN NaN 135330.3 NaN 21023 4879 25902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25905 101.69 NaN 41932 35 0 3743.1 0.261 + 4250 EVGQGGGAAHH 11 29 510.23877854733564 NaN 0 509.813232421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _EVGQGGGAAHH_ ENST00000338110.9_1_16:30075281-30075485:+|nuORF 1.4819007175156935 0.3379164178981577 2 V 1 10 6.9897 0 0 0.6863 0 0 131.94402925042215 784.4224337213499 916.3664629717721 0 0 0 0 0 0 0 0 0 + V 0.6863 + + 1 + NaN NaN 93777.9 NaN 21024 4879 25902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25906 101.7 NaN 44663 35 0 5055.8 0.261 -1 0 34 545.6606209861354 1633.960033558606 3 545.9953002929688 MULTI HCD FTMS 0 0 0 25902 23962.83203125 0.7096384276655204 16 -0.1683349609375 4 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109723.4 NaN 21025 4879 25902 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25909 101.71 NaN 814870 35 0 199720 0.327 -1 0 39 555.8167727488469 1109.6189925644937 2 555.8170776367188 MULTI HCD FTMS 0 0 0 25908 448737.125 0.8188841937927938 -9 0.11330413818359375 1 NaN NaN 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 -1 49.085 0 0 4.4236 0 0 423.1837641482812 0 423.1837641482812 0 49.085390679490075 0 0 0 2.305462187404089 0 0 0 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.4236 - 39 + NaN NaN 231598.4 NaN 21026 4881 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25910 101.71 NaN 126500 35 0 14584 0.261 -1 KYVDIFCLL 9 45 585.8133792466052 NaN 0 585.8137817382812 PEAK HCD FTMS 0 0 0 25908 36660.484375 0.6275067198113632 -26 0.36222076416015625 2 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ ENSG00000205413|ENST00000379958|SAMD9 16.149105407346934 0.21324626030841579 2 {I|L}{M(Oxidation (M))|F} 2 -1 14.464 0 0 1.2366 0 0 131.09369053477582 775.3419283502561 906.435618885032 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.2366 + + 19 + NaN NaN 123513.7 NaN 21027 4881 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25911 101.72 NaN 53118 35 0 5029.3 0.261 + 14945 LLGLLSLGFE 10 29 531.3138197028397 NaN 0 531.3136596679688 PEAK HCD FTMS 0 0 0 25908 12523.830078125 0.4289539811428054 -3 0.0342254638671875 3 Unmodified _LLGLLSLGFE_ ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1;ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114479.8 NaN 21028 4881 25908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25913 101.72 NaN 138360 35 0 13542 0.327 + 6605 FPLPAARRP 9 52 512.8062271942915 1023.5979014553831 2 512.8063354492188 MULTI HCD FTMS 0 0 0 25912 51253.0625 0.1390919854474377 9 -0.0913543701171875 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 15.847184025352803 0.2234401846867398 2 T{I|L}S{I|L}PE 6 -1 33.817 0 0 3.3038 0 0 365.22899062324376 0 365.22899062324376 0 14.353415603609747 0 0 0 0.3807196863200844 0 0 0 T{I|L}S{I|L}PE 3.3038 - 40 NaN NaN 110574.7 NaN 21029 4882 25912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25914 101.73 NaN 130700 35 0 10064 0.261 + 29639 VAPIIFLTI 9 42 493.8177769617074 985.6210009902148 2 493.81787109375 MULTI HCD FTMS 0 0 0 25912 23213.927734375 0.16062549435574933 9 -0.0913543701171875 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 16.942295170755138 0.21397866736869717 2 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4802055964399 0 753.4802055964399 0 20.026975159433533 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 21 NaN NaN 126468.8 NaN 21030 4882 25912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25915 101.73 NaN 257540 35 0 78513 0.261 + 31357 VYADGIFDLF 10 37 580.2870483824927 1158.5595438317853 2 580.2864990234375 MULTI HCD FTMS 0 0 0 25912 41663.12890625 0.011513897933823687 -24 0.32949066162109375 3 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 29.081581746732265 0.240155558137004 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 6 41.428 0 0 3.5758 0 0 618.3007934075598 0 618.3007934075598 0 32.47547537623447 0 0 0 1.25 0 0 0 + {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.5758 + + 67 NaN NaN 143793.9 NaN 21031 4882 25912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25916 101.73 NaN 52194 35 0 6463.2 0.262 + 23288 RHNNVDIL 8 36 490.7686684575239 979.5227839818479 2 490.7685241699219 MULTI HCD FTMS 0 0 0 25912 13016.3544921875 0.7126592913843208 5 -0.04900360107421875 4 Unmodified _RHNNVDIL_ CNNM1|p.I475N|1|0.3|ENSG00000119946|chr10:99330811-99330811|T/A|missense_variant 10.823927491677226 0.514154816617796 2 VVE{I|L} 4 6 26.128 0 0 2.6674 0 0 521.248827049025 0 521.248827049025 0 23.363605930594424 0 0 0 1.1435078169319297 0 0 0 VVE{I|L} 2.6674 - 15 NaN NaN 94151.5 NaN 21032 4882 25912 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25918 101.74 NaN 340710 35 0 59169 0.326 + 21483 PYFERLLKEA 10 46 633.3456126389681 NaN 0 633.360595703125 PEAK HCD FTMS 0 0 0 25917 13262.1279296875 0.7812980169910392 2 -0.01789093017578125 1 Unmodified _PYFERLLKEA_ REV__ENSG00000168026|ENST00000683103|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-3|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-5|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A;REV__nc|ENSG00000168026|Q8NDW8-7|TTC21A;REV__nc|ENSG00000168026|Q8NDW8|TTC21A 12.240655878213236 0.32970798410958835 2 V{I|L}{I|L}N 4 -1 20.433 0 0 1.6157 0 0 593.2551768386799 229.11846338443596 822.3736402231158 0 0 0 0 0 0 0 0 0 V{I|L}{I|L}N 1.6157 - 57 + NaN NaN 153943.1 NaN 21033 4883 25917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25920 101.75 NaN 84393 35 0 9048.2 0.411 -1 LVMVKIMSF 9 55 563.3083711544587 NaN 0 563.3224487304688 PEAK HCD FTMS 0 0 0 25919 4202.08447265625 0.42716209554241674 -1 0.00727081298828125 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))LVMVKIM(Oxidation (M))SF_ ENST00000321437.8_1_15:63556890-63556959:+|nuORF 8.593279151180031 0.2536050107310812 2 {I|L}GSG 4 -1 13.721 0 0 1.2201 0 0 332.1628488941413 475.2578524225219 807.4207013166632 0 0 0 0 0 0 0 0 0 {I|L}GSG 1.2201 - 53 + NaN NaN 119000 NaN 21034 4884 25919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25922 101.76 NaN 242720 35 0 41463 0.412 -1 0 53 606.7425843259471 1211.470615718694 2 607.2432861328125 MULTI HCD FTMS 0 0 0 25921 21420.384765625 0.06449145327652547 -19 0.24428558349609375 1 NaN NaN 2 M{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 -1 21.427 0 0 1.7686 0 0 0 783.2672213190061 783.2672213190061 2.552725051033061 0 0 0 0 0 0 0 0 M{M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.7686 - 24 + NaN NaN 159956.1 NaN 21035 4885 25921 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25924 101.76 NaN 209040 35 0 9505.5 0.411 + 29477 TYVFLMVLF 9 85 566.8089930520351 1131.6034331708702 2 566.8094482421875 MULTI HCD FTMS 0 0 0 25923 55053.796875 0.6629007300680436 13 -0.12546539306640625 1 Unmodified _TYVFLMVLF_ ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1 21.74664581756881 0.17247014374749275 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F} 9 4 [Y{M(Oxidation (M))|F}] + + 53.721 3.7236 1.2008 4.7473 4.7473 61.919 0 0 0 0 32.75199162882615 0 0 0 2.7302046884880937 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F} 4.7473 - 403 + NaN NaN 165487.3 NaN 21036 4886 25923 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25928 101.78 NaN 198620 35 0 25016 0.327 -1 DYMNLLGMIF 10 49 624.7851990701316 1247.5558452070632 2 624.7855834960938 MULTI HCD FTMS 0 0 0 25927 67338.796875 0.4999860782499803 -9 0.0822601318359375 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 29.84058131909904 0.23356904650364865 2 {I|L}{I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 6 -1 39.526 0 0 3.1682 0 0 539.16606337715 0 539.16606337715 0 39.52561882712928 0 0 0 1.5 0 0 0 {I|L}{I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 3.1682 + + 20 NaN NaN 128057.9 NaN 21037 4889 25927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25929 101.79 NaN 107360 35 0 18709 0.261 -1 QLTVIPEMSI 10 43 573.8058837234147 NaN 0 573.805908203125 PEAK HCD FTMS 0 0 0 25927 22003.341796875 0.23361111498191944 1 -0.01587677001953125 2 Oxidation (M) _QLTVIPEM(Oxidation (M))SI_ ENST00000529498.1_1_11:124545562-124545739:+|nuORF 14.405379775768559 0.3259538031337542 2 S{I|L} 2 -1 19.464 0 0 1.699 0 0 131.09640065152217 811.3665255182249 942.4629261697471 0 0 0 0 0 0.5 0 0.3494850021680094 0 S{I|L} 1.699 + + 12 + NaN NaN 115330.5 NaN 21038 4889 25927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25930 101.79 NaN 142910 35 0 33715 0.261 + 32711 WPLPPDWPLP 10 42 609.3210374800407 1216.6275220268813 2 609.3214111328125 MULTI HCD FTMS 0 0 0 25927 56846.92578125 0.5502716039112778 13 -0.1468048095703125 3 Unmodified _WPLPPDWPLP_ ENSG00000179222|ENST00000326587|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 18.1463463914782 0.3413772152514074 2 WP{I|L}P 4 6 36.938 0 0 3.0361 0 0 705.349412986525 0 705.349412986525 0 33.83925646871916 0 0 0 0.5 0 0 0 + WP{I|L}P 3.0361 + + 10 NaN NaN 126997.5 NaN 21039 4889 25927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25931 101.8 NaN 100730 35 0 28711 0.261 + 28263 TLLWSLTLL 9 37 530.3257840640268 1058.6370151948536 2 530.326171875 MULTI HCD FTMS 0 0 0 25927 14728.970703125 0.06356481900744643 -19 0.21082305908203125 4 Unmodified _TLLWSLTLL_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 6.723162845929126 0.3000504726104499 2 {I|L}[VP] 3 -1 8.072 0 0 0.76249 0 0 731.4220626575474 0 731.4220626575474 0 8.071968632008437 0 0 0 0 0 0 0 {I|L}[VP] 0.76249 - 6 + NaN NaN 124777.5 NaN 21040 4889 25927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25933 101.8 NaN 840030 35 0 182370 0.327 + 11409 IYPPLLGALSF 11 65 595.8446884102052 1189.6748238872103 2 595.8449096679688 MULTI HCD FTMS 0 0 0 25932 456433.6875 0.8123541827079129 -8 0.078399658203125 1 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 118.89474601620944 0.0176041632128881 2 [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 95.042 0 0 7.9889 7.9889 90.95 0 0 0 1.6465188641551265 1.6465188641551265 1.6465188641551265 8.565473235138128 0 3.385151878060192 1.5228787452803376 0.6989700043360187 0 + + [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}GAA[Y{I|L}];[Y{I|L}]PP{I|L}{I|L}QA[Y{I|L}] 7.9889;7.2689;5.281;4.3713 +;-;-;- + 391 + NaN NaN 219581.8 NaN 21041 4890 25932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25934 101.81 NaN 483840 35 0 109580 0.261 -1 0 49 591.2781641544208 1180.5417753756415 2 591.2785034179688 MULTI HCD FTMS 0 0 0 25932 289274.1875 0.24431479810506115 -17 0.194610595703125 2 NaN NaN 2 VYAD{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 7 -1 81.286 0 0 6.8855 0 0 0 412.1488131158813 412.1488131158813 41.248935070219446 0 0 0 0 2.274227503252014 2 0.3807196863200844 0 VYAD{[VA]|[{I|L}G]}{M(Oxidation (M))|F} 6.8855 - 452 + NaN NaN 159751 NaN 21042 4890 25932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25935 101.81 NaN 57572 35 0 6286.6 0.261 -1 RRRRKRRRMTM 11 34 540.3194947073129 1617.9366547221384 3 540.3198852539062 MULTI HCD FTMS 0 0 0 25932 16878.349609375 0.36680891274031935 5 -0.05084991455078125 3 Oxidation (M) _RRRRKRRRM(Oxidation (M))TM_ ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant 0 0.41892066650488113 2 E 1 -1 3.0989 0 0 0.19154 0 0 1111.8400188352227 374.03730188541255 1485.8773207206352 0 0 0 0 0 0 0 0 0 E 0.19154 - 2 + NaN NaN 96218.5 NaN 21043 4890 25932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25937 101.81 NaN 372810 35 0 124330 0.327 + 6640 FPLSITLVL 9 39 501.8153989047294 NaN 0 501.8153991699219 PEAK HCD FTMS 0 0 0 25936 274967.96875 0.5875279592389718 -4 0.04235076904296875 1 Unmodified _FPLSITLVL_ ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L 34.10243960390752 0.09718911733815057 2 V{I|L}TM 4 7 34.68 0 0 3.4625 0 0 131.0954830120575 423.2615145318969 554.3569975439544 0 0 0 0 0 1 0 0.4247425010840047 0 V{I|L}TM 3.4625 - 10 + NaN NaN 149576.2 NaN 21044 4891 25936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25938 101.82 NaN 67270 35 0 7470.5 0.261 -1 YLPWLWMM 8 32 586.2687221499096 1170.5228913666192 2 586.7698364257812 MULTI HCD FTMS 0 0 0 25936 15966.5546875 0.34240470345124885 12 -0.1275634765625 2 2 Oxidation (M) _YLPWLWM(Oxidation (M))M(Oxidation (M))_ ENST00000588151.5_1_19:12825916-12826073:-|nuORF 2.8892196856762586 0.5377058178582064 2 Y{I|L} 2 -1 13.812 0 0 1.18 0 0 0 891.3482149713499 891.3482149713499 8.327731244245344 0 0 0 0 0 0 0 0 Y{I|L} 1.18 + + 7 + NaN NaN 111966.9 NaN 21045 4891 25936 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25940 101.82 NaN 152960 35 0 15225 0.327 + -1 YMLIRSSFV 9 45 566.2974310216092 NaN 0 566.2970581054688 PEAK HCD FTMS 0 0 0 25939 15853.7646484375 0.32182206790089196 -12 0.12071990966796875 1 Oxidation (M) _YM(Oxidation (M))LIRSSFV_ REV__ENST00000546935.5_1_12:51470402-51476335:-|nuORF 18.13498045792455 0.19991664011725976 2 V 1 -1 10.797 0 0 0.95499 0 0 165.0782164295901 863.4092501275999 1028.48746655719 0 0 0 0 0 0.7302046884880937 0 0 0 V 0.95499 + + 40 + NaN NaN 110509.7 NaN 21046 4892 25939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25941 101.83 NaN 69083 35 0 12085 0.261 + 4043 ESCWDLSRQ 9 38 562.2436562819878 NaN 0 562.24365234375 PEAK HCD FTMS 0 0 0 25939 13922.0908203125 0.5906663322260998 -3 0.03845977783203125 2 Unmodified _ESCWDLSRQ_ ENSG00000100207|ENST00000677622|TCF20;nc|ENSG00000100207|Q9UGU0-2|TCF20 1.6526216038709556 0.28723846860855273 2 {I|L} 1 8 6.9897 0 0 0.62271 0 0 330.03527291378174 676.3330782525999 1006.3683511663817 0 0 0 0 0 0 0 0 0 + {I|L} 0.62271 + + 2 + NaN NaN 93699.6 NaN 21047 4892 25939 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25943 101.83 NaN 826940 35 0 190460 0.327 -1 0 33 555.8167727488469 1109.6189925644937 2 555.817138671875 MULTI HCD FTMS 0 0 0 25942 400596.625 0.7310343317353989 3 -0.028350830078125 1 NaN NaN 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 -1 49.085 0 0 4.4236 0 0 423.1838251834375 0 423.1838251834375 0 45.98644688804811 0 0 0 2.305462187404089 0 0 0 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.4236 - 41 + NaN NaN 220660.5 NaN 21048 4893 25942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25944 101.84 NaN 85370 35 0 8342.9 0.261 + 13682 KYPENFFLL 9 40 585.8133792466052 NaN 0 585.8129272460938 PEAK HCD FTMS 0 0 0 25942 46359.140625 0.7935157639844321 -14 0.14947509765625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 17.11289562659939 0.20677709319598864 2 {I|L}{M(Oxidation (M))|F} 2 8 19.222 0 0 1.6434 0 0 131.09564192161275 775.3433321588499 906.4389740804627 0 0 0 0 0 0.8252574989159953 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6434 - 6 + NaN NaN 113854.1 NaN 21049 4893 25942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25946 101.84 NaN 76744 35 0 8050.3 0.327 + 6926 FPVHRQKL 8 35 512.8062271942915 1023.5979014553831 2 512.8064575195312 MULTI HCD FTMS 0 0 0 25945 13447.9501953125 0.03649542098804873 21 -0.21553802490234375 1 Unmodified _FPVHRQKL_ ENSG00000163913|ENST00000348417|IFT122;ENST00000448668.2_1_3:129200375-129202705:+|nuORF;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122 8.593279151180031 0.5292430274356741 2 {I|L}PE 3 7 23.188 0 0 2.2653 0 0 666.3951893537125 0 666.3951893537125 0 23.187587626244124 0 0 0 0 0 0 0 {I|L}PE 2.2653 - 6 NaN NaN 104068.6 NaN 21050 4894 25945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25947 101.85 NaN 87918 35 0 46702 0.261 + 33249 YFILFIVFVI 10 25 637.386218252617 NaN 0 637.3863525390625 PEAK HCD FTMS 0 0 0 25945 22355.80859375 0.6214927000422974 19 -0.196746826171875 2 Unmodified _YFILFIVFVI_ REV__ENSG00000172188|ENST00000641580|OR4C11;REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant 1.844237919475145 0.33860587697544825 2 V 1 -1 6.9897 0 0 0.54918 0 0 131.12210411147618 1039.5443963155997 1170.6665004270758 0 0 0 0 0 0 0 0 0 V 0.54918 + + 1 + NaN NaN 115682.6 NaN 21051 4894 25945 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25949 101.85 NaN 3060000 35 0 1007900 0.327 + 31358 VYADGIFDLF 10 63 580.2870483824927 1158.5595438317853 2 580.2874145507812 MULTI HCD FTMS 0 0 0 25948 1412851.25 0.39045135387647023 -11 0.105682373046875 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 152.41221235671458 1.4491950712217411E-07 2 [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 0 + 116.35 0 0 10.043 10.043 91.702 0 0 0 2.416440611282624 2.416440611282624 2.416440611282624 5.216525140920609 0 3.774227503252014 1.3010299956639813 1.524227503252014 0 + + [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADAV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AVAD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]AV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[SG]V{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YN]{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YQ]V{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10.043;9.5923;8.7489;8.6806;8.5936;8.2987;7.8671;7.7536;7.3869;7.3033 +;-;-;-;-;-;-;-;-;- + 1499 NaN NaN 549842.4 NaN 21052 4895 25948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25950 101.86 NaN 131010 35 0 10321 0.262 + 29640 VAPIIFLTI 9 44 493.81786164157523 985.6211703499505 2 493.8188171386719 MULTI HCD FTMS 0 0 0 25948 55288.07421875 0.8562183774583446 -11 0.105682373046875 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 18.13498045792455 0.20367413111508956 2 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4780649223093 0 753.4780649223093 0 19.05787502935297 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 60 NaN NaN 107051.9 NaN 21053 4895 25948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25952 101.86 NaN 114410 35 0 25891 0.327 -1 0 37 435.22229356934656 434.2150171027466 1 435.2223815917969 MULTI HCD FTMS 0 0 0 25951 106619.1953125 0.6675188331949441 9 -0.098907470703125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 123505.3 NaN 21054 4896 25951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25953 101.87 NaN 141720 35 0 21700 0.261 + 2320 DMLVFSLIINT 11 37 633.3456126389681 NaN 0 633.360595703125 PEAK HCD FTMS 0 0 0 25951 7257.54541015625 0.4275562615019283 11 -0.11865234375 2 Unmodified _DMLVFSLIINT_ REV__VPS29|p.P148L|1|0.14|ENSG00000111237|chr12:110492111-110492111|G/A|missense_variant 10.150570793230772 0.3133258973391819 2 {I|L}{I|L} 2 -1 10.969 0 0 0.86734 0 0 692.324071079533 343.16108118228755 1035.4851522618205 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.86734 + + 12 + NaN NaN 127260.1 NaN 21055 4896 25951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25955 101.87 NaN 76839 35 0 13426 0.327 + 12082 KKEYSLDFF 9 35 588.8000646589642 1175.5855763847283 2 588.81591796875 MULTI HCD FTMS 0 0 0 25954 20200.712890625 0.40886525237635846 -9 0.0921173095703125 1 Unmodified _KKEYSLDFF_ tr|U7ST53|U7ST53_FUSNUProbablecelldivisionproteinWhiAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=whiAPE=3SV=1 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116007.3 NaN 21056 4897 25954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25956 101.87 NaN 114550 35 0 34553 0.262 + 5353 FFVKIVGH 8 37 473.7790222167969 NaN 0 473.7790222167969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FFVKIVGH_ ENSG00000162777|ENST00000357640|DENND2D;ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D 0.7936320650641473 0.38822285293237185 2 V 1 7 5.4846 0 0 0.58066 0 0 506.3180482404312 336.13324915103755 842.4512973914688 0 0 0 0 0 0 0 0 0 + V 0.58066 + + 1 + NaN NaN 111089.4 NaN 21057 4897 25954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25958 101.88 NaN 843630 35 0 272260 0.327 -1 0 65 606.7425843259471 1211.470615718694 2 606.7429809570312 MULTI HCD FTMS 0 0 0 25957 432065.53125 0.8881515656693093 -9 0.09503936767578125 1 NaN NaN 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 -1 32.225 0 0 2.66 0 0 671.2106800763687 0 671.2106800763687 0 24.265997036641593 0 0 0 0.6307196863200843 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 2.66 - 37 NaN NaN 214703.4 NaN 21058 4898 25957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25959 101.88 NaN 94118 35 0 16266 0.261 + 2181 DIFDAAFDFL 10 31 587.2765197446003 1172.5384865560004 2 587.2769775390625 MULTI HCD FTMS 0 0 0 25957 50574.86328125 0.6220454777817239 -3 0.02831268310546875 2 Unmodified _DIFDAAFDFL_ REV__ENSG00000164175|ENST00000296589|SLC45A2;REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2;REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 18.1463463914782 0.3413772152514074 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 -1 46.938 0 0 4.0031 0 0 632.2780904378913 0 632.2780904378913 0 37.98577533287428 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4.0031 - 19 NaN NaN 113150.6 NaN 21059 4898 25957 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25961 101.89 NaN 2747900 35 0 558890 0.327 + 31359 VYADGIFDLF 10 51 580.2870483824927 1158.5595438317853 2 581.2896728515625 MULTI HCD FTMS 0 0 0 25960 485558.34375 0.5878422750212867 -5 0.047149658203125 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 99.79894945604345 0.00025031564603709316 2 [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 0 + 75.271 0 0 6.4969 6.4969 87.315 0 0 0 4.361045765271285 13.411290632962718 4.361045765271285 6.180540824916392 0 3.017220322351953 1.3010299956639813 0.3494850021680094 0 + + [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F};[YV]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F} 6.4969;5.9635;4.994;3.2919 +;-;-;- + 670 NaN NaN 424973.7 NaN 21060 4899 25960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25962 101.89 NaN 261220 35 0 60185 0.261 + 30034 VFQAGLVNLLF 11 55 610.8553512185018 1219.6961495038036 2 610.8555297851562 MULTI HCD FTMS 0 0 0 25960 36295.515625 0.19436997128354336 -5 0.047149658203125 2 Unmodified _VFQAGLVNLLF_ ENSG00000149483|ENST00000278826|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138 19.361941925380144 0.2883811769592959 2 VN{I|L}{I|L}{M(Oxidation (M))|F} 5 6 37.691 0 0 3.0902 0 0 615.3365413831775 0 615.3365413831775 0 33.7113751626007 0 0 0 0.4247425010840047 0 0 0 + VN{I|L}{I|L}{M(Oxidation (M))|F} 3.0902 + + 62 NaN NaN 149746.6 NaN 21061 4899 25960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25963 101.9 NaN 174980 35 0 13170 0.264 + -1 WWCLCMLM 8 55 405.8321836810263 1214.474721643279 3 405.8336486816406 MULTI HCD FTMS 0 0 0 25960 35313.28515625 0.4321545782556698 -8 0.07563018798828125 3 2 Carbamidomethyl (C),Oxidation (M) _WWC(Carbamidomethyl (C))LC(Carbamidomethyl (C))M(Oxidation (M))LM_ REV__ENST00000235329.9_1_1:12058828-12058927:+|nuORF 7.910154910731844 0.5302565402355366 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.1383 0 0 936.3139437103287 0 936.3139437103287 0 21.365006360318688 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.1383 + + 19 NaN NaN 113207.6 NaN 21062 4899 25960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25964 101.9 NaN 158720 35 0 11237 0.261 + -1 YMVLILAFF 9 49 566.8089930520351 1131.6034331708702 2 566.8092041015625 MULTI HCD FTMS 0 0 0 25960 27972.53515625 0.3368162602669199 26 -0.32840728759765625 4 Oxidation (M) _YM(Oxidation (M))VLILAFF_ REV__ENSG00000148136|ENST00000277216|OR13C4;REV__OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant 9.347437153973935 0.2795965555214564 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.701 0 0 1.8294 0 0 853.4408182800483 0 853.4408182800483 0 -0.030834337684311208 -0.030834337684311208 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8294 - 41 + NaN NaN 124153.2 NaN 21063 4899 25960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25965 101.9 NaN 73333 35 0 9026.9 0.261 + 17238 LYPAFFGYYF 10 36 644.3079515111831 NaN 0 644.3076171875 PEAK HCD FTMS 0 0 0 25960 12936.923828125 0.4564736378523916 1 -0.01934814453125 5 Unmodified _LYPAFFGYYF_ ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF 12.531546534597751 0.32945902202414107 2 {M(Oxidation (M))|F} 1 9 15.485 0 0 1.2035 0 0 548.2274895674527 588.2801943071966 1136.5076838746493 0 0 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.2035 + + 3 + NaN NaN 102744.1 NaN 21064 4899 25960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25968 101.92 NaN 180040 35 0 23914 0.327 -1 DYMNLLGMIF 10 36 624.7851990701316 1247.5558452070632 2 624.7857055664062 MULTI HCD FTMS 0 0 0 25967 76595.125 0.5687136975866415 3 -0.03482818603515625 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 26.268140514670165 0.2654086933305545 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 37.218 0 0 2.9833 0 0 652.2527324094268 0 652.2527324094268 0 33.23908740944319 0 0 0 1.5 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.9833 + + 19 NaN NaN 115173.7 NaN 21065 4901 25967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25969 101.92 NaN 415580 35 0 162030 0.262 + 20303 NYPLLLLTL 9 41 530.3257840640268 1058.6370151948536 2 530.3261108398438 MULTI HCD FTMS 0 0 0 25967 85203.4609375 0.3677067924475629 -7 0.07366180419921875 2 Unmodified _NYPLLLLTL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 52.268347100219714 0.028397529699942435 2 [{I|L}T]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[{I|L}T] 9 4 + 52.61 0 0 4.9696 4.9696 91.552 0 0 0 22.164537177296495 25.162574822053543 22.164537177296495 52.60984977102048 0 1.4247425010840047 1.5228787452803376 0 0 [{I|L}T]{I|L}{[WS]|[C(Carbamidomethyl (C)){I|L}]}{I|L}{I|L}[{I|L}T] 4.9696 - 31 NaN NaN 152290.1 NaN 21066 4901 25967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25970 101.92 NaN 212390 35 0 30803 0.261 + 34508 YPFLLVGDLM 10 51 584.3092962412964 1166.6040395493926 2 584.309326171875 MULTI HCD FTMS 0 0 0 25967 54889.046875 0.37848270937197753 -7 0.07366180419921875 3 Unmodified _YPFLLVGDLM_ ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 46.020951573049366 0.09315764076686055 2 {I|L}V[DG]{I|L}M 6 4 43.148 0 0 3.6986 0 0 520.268846580275 0 520.268846580275 0 24.564856298445576 0 0 0 1.9247425010840047 0 0 0 + {I|L}V[DG]{I|L}M 3.6986 + + 103 NaN NaN 126341.6 NaN 21067 4901 25967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25971 101.93 NaN 189630 35 0 19253 0.264 + 35087 YVAFHSPCCGE 11 58 404.83075386289204 1211.4704321888762 3 404.830810546875 MULTI HCD FTMS 0 0 0 25967 13981.9033203125 0.25081504775122426 -5 0.05475616455078125 4 Unmodified _YVAFHSPCCGE_ REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF 2.6312355333042263 0.4073809613003177 2 [YV][R{M(Oxidation (M))|F}]E 5 -1 17.447 0 0 1.4402 0 0 0 514.1254976861936 514.1254976861936 11.962724883926654 0 0 0 0 0 1.6989700043360187 0 0 [YV][R{M(Oxidation (M))|F}]E 1.4402 - 8 + NaN NaN 119514.6 NaN 21068 4901 25967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25973 101.93 NaN 1198400 35 0 258320 0.327 -1 0 79 591.2781641544208 1180.5417753756415 2 591.2783813476562 MULTI HCD FTMS 0 0 0 25972 941960.1875 0.7955594483592424 -5 0.0612030029296875 1 NaN NaN 2 VYADGG[QP]D{I|L} 10 -1 108 0 0 9.1483 0 0 0 162.05605493717033 162.05605493717033 76.38280541414979 0 0 0 0 3.504432191740108 2 1.4361818737241734 0 VYADGG[QP]D{I|L} 9.1483 - 4037 + NaN NaN 272568.1 NaN 21069 4902 25972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25974 101.94 NaN 863440 35 0 181600 0.261 + 11410 IYPPLLGALSF 11 74 595.8446884102052 1189.6748238872103 2 595.8447875976562 MULTI HCD FTMS 0 0 0 25972 309993.9375 0.5517227992559606 4 -0.04100799560546875 2 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 111.28704002717404 0.01943762955880584 2 [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 89.301 0 0 7.5064 7.5064 93.019 0 0 0 8.23400296335842 8.23400296335842 8.23400296335842 13.323198202617988 0 3.128144697160131 1.5228787452803376 0.9559771852360797 0 + + [Y{I|L}]PP{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P{I|L}{I|L}GA{I|L}S{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P{I|L}{I|L}Q{I|L}S{M(Oxidation (M))|F};[Y{I|L}]PP{I|L}{I|L}GAA[Y{I|L}];[Y{I|L}]PP{I|L}{I|L}QA[Y{I|L}];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P{I|L}{I|L}GAA[Y{I|L}];{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{I|L}P{I|L}{I|L}QA[Y{I|L}] 7.5064;6.3865;5.6418;4.9218;4.6698;3.9498;3.4974;2.7774 +;-;-;-;-;-;-;- + 556 + NaN NaN 221155.1 NaN 21070 4902 25972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25976 101.94 NaN 109160 35 0 30639 0.327 + 28461 TPLVFITVL 9 24 501.81527166648357 1001.6159903997672 2 501.8153991699219 MULTI HCD FTMS 0 0 0 25975 70126.28125 0.1957168618333974 -4 0.05193328857421875 1 Unmodified _TPLVFITVL_ REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1 15.847184025352803 0.2234401846867398 2 V{I|L} 2 -1 25.969 0 0 2.5927 0 0 771.4515815700365 0 771.4515815700365 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.5927 + + 3 NaN NaN 120029.6 NaN 21071 4903 25975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25977 101.95 NaN 47252 35 0 7441.2 0.261 -1 0 38 545.6604393335298 1633.9594886007892 3 545.9950561523438 MULTI HCD FTMS 0 0 0 25975 17650.76953125 0.615807983785593 -10 0.10852813720703125 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.28178 0 0 1053.6675096962954 430.19480310611567 1483.862312802411 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.28178 - 5 + NaN NaN 113550.7 NaN 21072 4903 25975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25979 101.95 NaN 330740 35 0 74791 0.327 -1 0 43 555.8167727488469 1109.6189925644937 2 555.817138671875 MULTI HCD FTMS 0 0 0 25978 170110.578125 0.310428658256249 14 -0.1555328369140625 1 NaN NaN 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 -1 39.57 0 0 3.5661 0 0 423.18211562324376 0 423.18211562324376 0 37.09569063612989 0 0 0 1.805462187404089 0 0 0 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 3.5661 - 33 NaN NaN 150142.7 NaN 21073 4904 25978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25980 101.95 NaN 311030 35 0 71368 0.261 + 27294 SYQFILNLF 9 44 572.8054286322026 1143.5963043312051 2 572.8056640625 MULTI HCD FTMS 0 0 0 25978 108334.8203125 0.14952173039928568 -17 0.1793212890625 2 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 47.594388314883695 0.03493607795751234 2 {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5 4 58.188 0 0 5.0881 0 0 525.2201405255875 0 525.2201405255875 0 32.245462655597095 0 0 0 1.8807196863200843 0 0 0.3807196863200844 + {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.0881 + + 104 NaN NaN 154407.2 NaN 21074 4904 25978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25982 101.96 NaN 49465 35 0 5082.2 0.327 -1 0 33 512.8064414100976 1023.5983298869952 2 512.8068237304688 MULTI HCD FTMS 0 0 0 25981 25908.07421875 0.3204132750356212 -15 0.15924835205078125 1 NaN NaN 2 [Y{I|L}]R 3 -1 22.932 0 0 2.2403 0 0 0 588.3227310923263 588.3227310923263 6.73393743112328 0 0 0 0 0 2 0 0 [Y{I|L}]R 2.2403 - 7 NaN NaN 100275.1 NaN 21075 4905 25981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25983 101.96 NaN 110270 35 0 9135.2 0.261 + 13852 KYPSPFFVF 9 42 566.2974310216092 NaN 0 566.2967529296875 PEAK HCD FTMS 0 0 0 25981 18151.072265625 0.36845605701089285 1 -0.01268768310546875 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.23204487237355156 2 V 1 8 8.7371 0 0 0.7728 0 0 165.0800080125395 863.4088228815061 1028.4888308940456 0 0 0 0 0 0.3252574989159953 0 0 0 + V 0.7728 + + 5 + NaN NaN 112030.1 NaN 21076 4905 25981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25984 101.97 NaN 33016 35 0 3573.6 0.261 -1 0 30 641.6199340820312 NaN 0 641.6199340820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 R 1 -1 3.0989 0 0 0.24187 0 0 597.8053384748063 524.2864473932249 1122.0917858680311 0 0 0 0 0 0 0 0 0 R 0.24187 - 1 + NaN NaN 95203.9 NaN 21077 4905 25981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25986 101.97 NaN 4367600 35 0 1447900 0.326 + 31360 VYADGIFDLF 10 63 580.2870483824927 1158.5595438317853 2 580.28759765625 MULTI HCD FTMS 0 0 0 25985 3618507.75 1 0 0 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 152.41221235671458 1.4491950712217411E-07 2 [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 0 + 117.41 0 0 10.135 10.135 91.59 0 0 0 1.2236374744834677 1.2236374744834677 1.2236374744834677 4.731975075880328 0 3.8494850021680094 1.3010299956639813 1.555462187404089 0 + + [YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AD{I|L}G{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADAV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AVEG{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]AVAD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]{I|L}G{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]AV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[VS]G{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10.135;9.7261;9.6843;8.8827;8.8409;8.7725;8.6414;8.4324;8.3906;7.9568 +;-;-;-;-;-;-;-;-;- + 1978 NaN NaN 624762.6 NaN 21078 4906 25985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25988 101.98 NaN 95177 35 0 6365.6 0.411 + 29641 VAPIIFLTI 9 54 493.81786164157523 985.6211703499505 2 493.8177795410156 MULTI HCD FTMS 0 0 0 25987 64572.3984375 1 0 0 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 24.67388899826682 0.14717941214954053 2 {I|L}T{I|L} 3 -1 31.198 0 0 3.1653 0 0 640.3936634748062 0 640.3936634748062 0 22.235790156711097 0 0 0 0.5 0 0 0 {I|L}T{I|L} 3.1653 + + 106 NaN NaN 126973.8 NaN 21079 4907 25987 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25990 101.99 NaN 146310 35 0 26817 0.412 + -1 VAMMRRKYSE 10 52 434.8822201250045 NaN 0 434.882080078125 PEAK HCD FTMS 0 0 0 25989 58760.46875 0.445523963082595 -163 2.4536209106445312 1 2 Oxidation (M) _VAM(Oxidation (M))M(Oxidation (M))RRKYSE_ REV__ENSG00000151687|ENST00000684021|ANKAR;REV__nc|ENSG00000151687|Q7Z5J8-2|ANKAR;REV__nc|ENSG00000151687|Q7Z5J8-3|ANKAR 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 144551.2 NaN 21080 4908 25989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25993 102 NaN 697800 35 0 228680 0.411 + -1 PWAWDCSSGF 10 88 606.7425843259471 1211.470615718694 2 606.7429809570312 MULTI HCD FTMS 0 0 0 25992 412317.9375 0.8475585189235468 3 -0.0375518798828125 1 Carbamidomethyl (C) _PWAWDC(Carbamidomethyl (C))SSGF_ REV__ENST00000460945.5_1_9:32989779-33025045:-|nuORF;REV__ENST00000474658.6_1_9:32989779-33001570:-|nuORF 6.723162845929126 0.4397169348982109 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 -1 43.116 0 0 3.559 0 0 671.2110685962267 0 671.2110685962267 0 18.474927697501904 0 0 0 1.2302046884880937 0 0.48965182871044377 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.559 - 318 NaN NaN 321439.2 NaN 21081 4910 25992 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25995 102.01 NaN 124550 35 0 18721 0.326 + 2182 DIFDAAFDFL 10 35 587.2765197446003 1172.5384865560004 2 587.2772216796875 MULTI HCD FTMS 0 0 0 25994 47081.98828125 0.5790848653896712 10 -0.139678955078125 1 Unmodified _DIFDAAFDFL_ REV__ENSG00000164175|ENST00000296589|SLC45A2;REV__nc|ENSG00000164175|Q9UMX9-2|SLC45A2;REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 18.1463463914782 0.3413772152514074 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 -1 46.938 0 0 4.0031 0 0 632.2788490447442 0 632.2788490447442 0 36.8765315847925 0 0 0 1.5 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4.0031 - 27 NaN NaN 109896.3 NaN 21082 4911 25994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25996 102.01 NaN 102000 35 0 46738 0.261 + 33250 YFILFIVFVI 10 31 637.386218252617 NaN 0 637.3864135742188 PEAK HCD FTMS 0 0 0 25994 20628.4765625 0.5734727752218982 36 -0.5078659057617188 2 Unmodified _YFILFIVFVI_ REV__ENSG00000172188|ENST00000641580|OR4C11;REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant 1.844237919475145 0.33860587697544825 2 V 1 -1 6.9897 0 0 0.54918 0 0 131.12091786970478 1039.5491427057252 1170.67006057543 0 0 0 0 0 0 0 0 0 V 0.54918 + + 1 + NaN NaN 103648.5 NaN 21083 4911 25994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25997 102.02 NaN 46155 35 0 7050.6 0.261 + 32159 VYSPFVLLNTL 11 27 633.3611707772326 NaN 0 633.3605346679688 PEAK HCD FTMS 0 0 0 25994 10877.8955078125 0.5796439177786648 1 -0.0226898193359375 3 Unmodified _VYSPFVLLNTL_ ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-2|ZMYM3 6.630372943996041 0.3233116848737396 2 {I|L} 1 10 16.99 0 0 1.3434 0 0 692.3549576659901 456.2456148736938 1148.600572539684 0 0 0 0 0 1 0 0 0 + {I|L} 1.3434 + + 9 + NaN NaN 95242.8 NaN 21084 4911 25994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25998 102.02 NaN 53129 35 0 23461 0.261 + 33074 YDKKKMISKL 10 23 627.3677887406635 NaN 0 627.3670654296875 PEAK HCD FTMS 0 0 0 25994 11750.1298828125 0.36623475266399963 -10 0.09272003173828125 4 Unmodified _YDKKKMISKL_ REV__ENSG00000132854|ENST00000371153|KANK4;REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97768.5 NaN 21085 4911 25994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 25999 102.02 NaN 57320 35 0 10437 0.263 + 33648 YIYPQSLN 8 28 499.2517505898781 NaN 0 499.3468017578125 PEAK HCD FTMS 0 0 0 25994 12180.4501953125 0.68687261128187 1 -0.0226898193359375 5 Unmodified _YIYPQSLN_ ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7 0.7936320650641473 0.38822285293237185 2 T 1 8 5.4846 0 0 0.55039 0 0 516.4072964905 376.0216463678344 892.4289428583345 0 0 0 0 0 0 0 0 0 T 0.55039 - 2 + NaN NaN 97982.9 NaN 21086 4911 25994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26000 102.03 NaN 623050 35 0 174520 0.262 + 35091 YVAGDTSS 8 54 400.1775207519531 NaN 0 400.1775207519531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _YVAGDTSS_ REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2 6.354104778181461 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.87626 0 0 563.534953587111 132.04534326724846 695.5802968543594 0 0 0 0 0 0 0 0 0 V 0.87626 + + 15 + NaN NaN 186987.6 NaN 21087 4911 25994 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26002 102.03 NaN 372610 35 0 52397 0.411 + 30035 VFQAGLVNLLF 11 86 610.8553512185018 1219.6961495038036 2 610.8554077148438 MULTI HCD FTMS 0 0 0 26001 73616.2734375 0.3942303259136672 8 -0.10407257080078125 1 Unmodified _VFQAGLVNLLF_ ENSG00000149483|ENST00000278826|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138 59.368380827593164 0.04294793896921387 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}AG{I|L}VN{I|L}{I|L}{M(Oxidation (M))|F} 11 2 + 67.274 0 0 5.5156 5.5156 85.024 0 0 0 8.021888405145987 43.307617203188 8.021888405145987 4.586073148417739 0 2.5356668758921828 0 0 0.6747425010840047 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}AG{I|L}VN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}Q{I|L}VN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}V{M(Oxidation (M))|F}QN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}V{I|L}{M(Oxidation (M))|F}QN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}QVN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}AG{I|L}VGG{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}QVN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{I|L}VQN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}VQN{I|L}{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}Q{I|L}VGG{I|L}{I|L}{M(Oxidation (M))|F} 5.5156;5.1396;5.135;4.8881;4.7726;4.7672;4.6889;4.5258;4.4421;4.3882 -;-;-;-;-;-;-;-;-;- 1186 NaN NaN 205249.7 NaN 21088 4912 26001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26004 102.04 NaN 266410 35 0 106910 0.327 + 20304 NYPLLLLTL 9 34 530.3257840640268 1058.6370151948536 2 530.3258056640625 MULTI HCD FTMS 0 0 0 26003 97946.6484375 0.42270170168745935 5 -0.0672760009765625 1 Unmodified _NYPLLLLTL_ CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L 53.832793166522166 0.026208976789938845 2 [YN][{I|L}P]{I|L}{I|L}{I|L}T{I|L} 9 0 + 61.322 0 0 5.7926 5.7926 93.091 0 0 0 0.20181229336984075 61.32245020145518 0.20181229336984075 61.32245020145518 0 1.75 1.3979400086720375 0 0 + + [YN][{I|L}P]{I|L}{I|L}{I|L}T{I|L} 5.7926 + + 83 NaN NaN 134103.4 NaN 21089 4913 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26005 102.04 NaN 97641 35 0 12231 0.261 -1 DYMNLLGMIF 10 32 624.7851990701316 1247.5558452070632 2 624.7857666015625 MULTI HCD FTMS 0 0 0 26003 44394.29296875 0.32962466613903235 15 -0.2116851806640625 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 15.248480904072842 0.3684828712757339 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 37.218 0 0 2.9833 0 0 652.2520292034668 0 652.2520292034668 0 37.21848749616356 0 0 0 1.5 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.9833 + + 10 NaN NaN 119006.4 NaN 21090 4913 26003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26007 102.05 NaN 360800 35 0 52353 0.327 + 27161 SYNLAQPINF 10 62 583.7960924517432 1165.5776319702863 2 584.3095703125 MULTI HCD FTMS 0 0 0 26006 31449.822265625 0.5306603902608978 -7 0.06858062744140625 1 Unmodified _SYNLAQPINF_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 12.240655878213236 0.39661705172222156 2 W{I|L}{I|L}{M(Oxidation (M))|F}Q[MT] 7 8 30.75 0 0 2.6382 0 0 228.11001784492345 0 228.11001784492345 0 4.903726003536306 0 0 0 1.1549471895720984 0 0 0 W{I|L}{I|L}{M(Oxidation (M))|F}Q[MT] 2.6382 - 282 NaN NaN 141185.9 NaN 21091 4914 26006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26008 102.05 NaN 121060 35 0 13356 0.261 + -1 GFSALLCLHD 10 48 566.7752461444042 1131.5359393556082 2 566.7752075195312 MULTI HCD FTMS 0 0 0 26006 12031.7021484375 0.43323431441277016 7 -0.09992218017578125 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.42334543440173333 2 SW 2 -1 30.217 0 0 2.6704 0 0 840.4148894061926 0 840.4148894061926 0 15.52378753635658 0 0 0 0.9247425010840047 0 0 0 SW 2.6704 - 28 + NaN NaN 116665.4 NaN 21092 4914 26006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26010 102.06 NaN 868660 35 0 195630 0.327 -1 0 64 591.2781641544208 1180.5417753756415 2 591.2784423828125 MULTI HCD FTMS 0 0 0 26009 514825.28125 0.4348104327420333 8 -0.12964630126953125 1 NaN NaN 2 VYADGG[QP]D{I|L} 10 -1 106.47 0 0 9.0191 0 0 0 162.05593286685783 162.05593286685783 82.26609126540922 0 0 0 0 3.4386218330464624 2 1.416386562212267 0 VYADGG[QP]D{I|L} 9.0191 - 2264 + NaN NaN 239719.7 NaN 21093 4915 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26011 102.06 NaN 330190 35 0 59943 0.261 + 11411 IYPPLLGALSF 11 62 595.8446884102052 1189.6748238872103 2 595.8446655273438 MULTI HCD FTMS 0 0 0 26009 119710.734375 0.2130594617527375 17 -0.22805023193359375 2 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 69.10491478415734 0.016192963456165197 2 [Y{I|L}]P[{I|L}P]{I|L}GA{I|L}S{M(Oxidation (M))|F} 11 0 + 53.134 0 0 4.4663 4.4663 82.997 0 0 0 33.90865441434318 7.217813632786978 7.217813632786978 3.39327001161859 0 2.416386562212267 0 0.75 0 + + [Y{I|L}]P[{I|L}P]{I|L}GA{I|L}S{M(Oxidation (M))|F};[Y{I|L}]P[{I|L}P]{I|L}Q{I|L}S{M(Oxidation (M))|F} 4.4663;4.1811 +;- + 96 + NaN NaN 158476.8 NaN 21094 4915 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26012 102.07 NaN 79099 35 0 9783.6 0.261 + 26575 SVSFSPLFIFQ 11 41 636.3371850313816 1270.6598171295632 2 636.3357543945312 MULTI HCD FTMS 0 0 0 26009 16647.44140625 0.41039086724572926 -8 0.07798004150390625 3 Unmodified _SVSFSPLFIFQ_ ENST00000548283.6_1_12:112373822-112373960:-|nuORF 7.101721422024254 0.3877749288398915 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 3 9 20.458 0 0 1.61 0 0 0 847.4358681263413 847.4358681263413 13.46787486224656 0 0 0 0 1 0 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F} 1.61 - 11 + NaN NaN 109597.9 NaN 21095 4915 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26013 102.07 NaN 77081 35 0 4711 0.264 + 30340 VLEAKRRHRHR 11 44 486.62728928186357 1456.8600384457907 3 486.6276550292969 MULTI HCD FTMS 0 0 0 26009 34317.58203125 0.2064292677489252 -12 0.116455078125 4 Unmodified _VLEAKRRHRHR_ REV__ENSG00000183856|ENST00000361170|IQGAP3 0.09484139111097674 0.41850472438158626 2 H 1 -1 0.48455 0 0 0.03326 0 0 1001.6982780471564 315.0841463678344 1316.7824244149908 0 0 0 0 0 0 0 0 0 H 0.03326 + + 3 + NaN NaN 102378.8 NaN 21096 4915 26009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26015 102.07 NaN 368830 35 0 123340 0.327 + -1 LILMATLVL 9 30 501.815518182319 NaN 0 501.8155212402344 PEAK HCD FTMS 0 0 0 26014 193065.78125 0.7645991179537458 -5 0.0652008056640625 1 Oxidation (M) _LILM(Oxidation (M))ATLVL_ REV__ENSG00000171054|ENST00000338616|OR13H1 36.04419817259434 0.09096180745216527 2 V{I|L}TM 4 -1 39.68 0 0 3.9616 0 0 131.09591403070118 423.26181970767817 554.3577337383794 0 0 0 0 0 1.5 0 0.4247425010840047 0 V{I|L}TM 3.9616 - 16 + NaN NaN 154408.8 NaN 21097 4916 26014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26016 102.08 NaN 366800 35 0 96951 0.261 + 16892 LYFLFAPTL 9 46 542.8073631469828 1083.6001733607654 2 542.8071899414062 MULTI HCD FTMS 0 0 0 26014 83915.703125 0.31851114651570267 -5 0.0652008056640625 2 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 30.224811164608877 0.11021837014094292 2 A 1 8 16.237 0 0 1.4984 0 0 329.19552021089277 680.3448459969337 1009.5403662078265 0 0 0 0 0 0.9247425010840047 0 0 0 + A 1.4984 + + 32 + NaN NaN 138142.6 NaN 21098 4916 26014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26017 102.08 NaN 42369 35 0 5303.8 0.261 -1 0 32 545.6604393335298 1633.9594886007892 3 545.9946899414062 MULTI HCD FTMS 0 0 0 26014 15614.2333984375 0.5447563954889235 1 -0.0162200927734375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93823.9 NaN 21099 4916 26014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26018 102.08 NaN 54840 35 0 7470 0.261 + 17155 LYLPSFFTY 9 39 575.793269026153 1149.5719851191059 2 576.2938842773438 MULTI HCD FTMS 0 0 0 26014 30521.33984375 0.8236808604482886 -11 0.11376953125 4 Unmodified _LYLPSFFTY_ ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1 10.823927491677226 0.26684000660059787 2 {M(Oxidation (M))|F}[YT] 3 6 8.6844 0 0 0.75545 0 0 720.382270618909 0 720.382270618909 0 8.19984993812689 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}[YT] 0.75545 + + 14 + NaN NaN 119824.2 NaN 21100 4916 26014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26020 102.09 NaN 789000 35 0 190870 0.327 + 27295 SYQFILNLF 9 42 572.8054286322026 1143.5963043312051 2 572.8057861328125 MULTI HCD FTMS 0 0 0 26019 457638.28125 0.6316239553642355 -4 0.051055908203125 1 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 67.83816525789305 0.009787749748478139 2 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}[YT]N{I|L}{M(Oxidation (M))|F} 9 5 + 69.944 0 0 6.1161 6.1161 88.722 0 0 0 3.339993556128107 43.03273116069214 3.339993556128107 9.208187539523749 0 1.4247425010840047 1.6989700043360187 0.3807196863200844 0.3807196863200844 {[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}[YT]N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{I|L}{M(Oxidation (M))|F}[YT]GG{I|L}{M(Oxidation (M))|F} 6.1161;5.3109 -;- 107 NaN NaN 229715 NaN 21101 4917 26019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26021 102.09 NaN 233880 35 0 40312 0.261 -1 0 48 555.8167727488469 1109.6189925644937 2 555.8170166015625 MULTI HCD FTMS 0 0 0 26019 35355.328125 0.06451866305450059 27 -0.38083648681640625 2 NaN NaN 2 V{I|L}{M(Oxidation (M))|F} 3 -1 34.693 0 0 3.1265 0 0 732.3878040998062 0 732.3878040998062 0 25.228787452803374 0 0 0 1 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.1265 - 22 NaN NaN 117091.8 NaN 21102 4917 26019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26022 102.1 NaN 125280 35 0 18553 0.261 + 6606 FPLPAARRP 9 41 512.8064414100976 1023.5983298869952 2 512.8076171875 MULTI HCD FTMS 0 0 0 26019 30188.537109375 0.3733511013624045 -3 0.04166412353515625 3 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 16.942295170755138 0.21397866736869717 2 {I|L}S{I|L}PE 5 -1 42.563 0 0 4.1582 0 0 466.27549941230626 0 466.27549941230626 0 40.34440644703906 0 0 0 0.8494850021680094 0 0 0 {I|L}S{I|L}PE 4.1582 - 21 NaN NaN 115006.8 NaN 21103 4917 26019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26023 102.1 NaN 100810 35 0 10537 0.261 + 13853 KYPSPFFVF 9 44 566.2974310216092 NaN 0 566.2965698242188 PEAK HCD FTMS 0 0 0 26019 25123.56640625 0.5099935739680367 13 -0.180206298828125 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 17.11289562659939 0.20677709319598864 2 V 1 8 10.485 0 0 0.92736 0 0 165.08098350977428 863.411361971925 1028.4923454816992 0 0 0 0 0 0.5 0 0 0 + V 0.92736 + + 2 + NaN NaN 100621.9 NaN 21104 4917 26019 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26025 102.11 NaN 1642700 35 0 540330 0.327 + 31361 VYADGIFDLF 10 55 580.2870483824927 1158.5595438317853 2 580.287353515625 MULTI HCD FTMS 0 0 0 26024 1009753.75 0.27905253208314945 12 -0.1639862060546875 1 Unmodified _VYADGIFDLF_ ENSG00000102230|ENST00000379144|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant 118.89474601620944 4.021404175452203E-05 2 {NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 10 3 + 100.11 0 0 8.641 8.641 90.181 0 0 0 4.488474775526186 10.280287236002437 4.488474775526186 4.488474775526186 0 2.9247425010840047 1.5228787452803376 1.1989700043360187 0 {NN|[MP]|[D{I|L}]|[EV]}[YG]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADG{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}KD{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YG]AV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YN]{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};[YV]ADAV{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}[SG]V{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[YQ]V{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QD]|[EN]|[WG]|[KD]|[RS]}D{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}D]|MM}[VS]G{I|L}{M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 8.641;8.2536;8.0602;7.9568;7.6456;7.5693;7.2654;6.9614;6.7016;6.6549 -;+;-;-;-;-;-;-;-;- + 965 NaN NaN 357402.1 NaN 21105 4918 26024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26026 102.11 NaN 135940 35 0 13467 0.261 + 29642 VAPIIFLTI 9 47 493.8179480981184 985.6213432630368 2 493.8174743652344 MULTI HCD FTMS 0 0 0 26024 71135.40625 0.9293031725488239 -3 0.04848480224609375 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 24.67388899826682 0.14717941214954053 2 {I|L}T{I|L} 3 -1 31.198 0 0 3.1653 0 0 640.396776267775 0 640.396776267775 0 21.276362525516532 0 0 0 0.5 0 0 0 {I|L}T{I|L} 3.1653 + + 48 NaN NaN 111472.9 NaN 21106 4918 26024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26027 102.11 NaN 91004 35 0 11129 0.261 + 28061 TGPPLELDL 9 44 477.76085345102626 953.5071539688525 2 478.2620544433594 MULTI HCD FTMS 0 0 0 26024 18512.7109375 0.29063809150481995 -3 0.04848480224609375 3 Unmodified _TGPPLELDL_ REV__ENSG00000187866|ENST00000394264|PABIR1 6.723162845929126 0.3000504726104499 2 M 1 -1 6.9897 0 0 0.73305 0 0 385.20522633389004 434.2399431223022 819.4451694561922 0 0 0 0 0 0 0 0 0 M 0.73305 - 5 + NaN NaN 107328.9 NaN 21107 4918 26024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26029 102.12 NaN 109720 35 0 27922 0.327 -1 KKCHQCVETI 10 40 434.8822201250045 NaN 0 434.8818664550781 PEAK HCD FTMS 0 0 0 26028 49272.72265625 0.3735875348966148 -152 2.2705917358398438 1 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 130853.8 NaN 21108 4919 26028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26030 102.12 NaN 83834 35 0 11730 0.261 + 33148 YEKIIVFWSS 10 36 636.3371850313816 1270.6598171295632 2 636.3375854492188 MULTI HCD FTMS 0 0 0 26028 32969.57421875 0.8127622633515013 -4 0.0613555908203125 2 Unmodified _YEKIIVFWSS_ REV__tr|U7SXC3|U7SXC3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00975PE=4SV=1 8.155526934196011 0.43213520406898465 2 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L} 4 -1 24.693 0 0 1.9433 0 0 0 734.3510225885374 734.3510225885374 16.10924374808178 0 0 0 0 1 0 0 0 {[WS]|[C(Carbamidomethyl (C)){I|L}]}{M(Oxidation (M))|F}{I|L} 1.9433 - 15 + NaN NaN 116824.8 NaN 21109 4919 26028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26031 102.13 NaN 68463 35 0 9491.4 0.261 + 2369 DPENFPFVVL 10 25 588.8000646589642 1175.5855763847283 2 588.7999877929688 MULTI HCD FTMS 0 0 0 26028 21491.45703125 0.4349900941909692 13 -0.16669464111328125 3 Unmodified _DPENFPFVVL_ ENSG00000075785|ENST00000265062|RAB7A 4.897010918128616 0.4493830473644964 2 V{I|L} 2 8 20.969 0 0 1.7837 0 0 945.419790599727 0 945.419790599727 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 1.7837 + + 1 NaN NaN 118517.1 NaN 21110 4919 26028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26032 102.13 NaN 111430 35 0 8761.3 0.261 + 31051 VSTYARYSW 9 45 566.7752461444042 1131.5359393556082 2 566.7748413085938 MULTI HCD FTMS 0 0 0 26028 18729.07421875 0.6743914974490772 11 -0.15111541748046875 4 Unmodified _VSTYARYSW_ REV__MORC1|p.F237Y|1|0.19|ENSG00000114487|chr3:109069737-109069737|A/T|missense_variant 9.38312468134398 0.279288223203164 2 SW 2 -1 30.217 0 0 2.6704 0 0 840.4145231952551 0 840.4145231952551 0 9.247425010840047 0 0 0 0.9247425010840047 0 0 0 SW 2.6704 + + 61 + NaN NaN 116298.4 NaN 21111 4919 26028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26034 102.14 NaN 167330 35 0 53418 0.327 -1 0 33 606.7425843259471 1211.470615718694 2 606.7430419921875 MULTI HCD FTMS 0 0 0 26033 61941.5859375 0.12732678853430454 13 -0.163238525390625 1 NaN NaN 2 {I|L}{M(Oxidation (M))|F} 2 -1 17.078 0 0 1.4097 0 0 933.3021717755875 0 933.3021717755875 0 14.604093769761874 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.4097 - 5 NaN NaN 114797.5 NaN 21112 4920 26033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26035 102.14 NaN 56910 35 0 5462.2 0.262 + 29643 VAPIIFLTI 9 33 493.8179480981184 985.6213432630368 2 493.8187561035156 MULTI HCD FTMS 0 0 0 26033 4960.97412109375 0.06480948423156063 -1 0.0162506103515625 2 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.2910521888787154 2 T{I|L} 2 -1 25.969 0 0 2.6348 0 0 753.4751454084 0 753.4751454084 0 25.969100130080562 0 0 0 0.5 0 0 0 T{I|L} 2.6348 + + 5 NaN NaN 106742.5 NaN 21113 4920 26033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26036 102.14 NaN 43781 35 0 4853.7 0.261 + -1 CKIMHKKM 8 33 559.2877197265625 NaN 0 559.2877197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))C(Carbamidomethyl (C))KIMHKKM_ REV__ENST00000358678.7_1_12:93873234-93881330:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96435.1 NaN 21114 4920 26033 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26038 102.15 NaN 62477 35 0 11210 0.327 -1 0 28 620.4216998479695 619.4144233813695 1 620.4217529296875 MULTI HCD FTMS 0 0 0 26037 85656.234375 0.6535315386843771 15 -0.19580078125 1 NaN NaN 2 E 1 -1 2.2185 0 0 0.35816 0 0 138.15457948664135 349.18696008853755 487.3415395751789 0 0 0 0 0 0 0 0 0 E 0.35816 - 1 + NaN NaN 98817.6 NaN 21115 4921 26037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26039 102.15 NaN 74840 35 0 6209.9 0.261 + 23827 RRRRSRQRQRY 11 35 539.9848742019959 1616.9327932061876 3 540.3197021484375 MULTI HCD FTMS 0 0 0 26037 46154.82421875 0.8183048736907134 2 -0.03912353515625 2 Unmodified _RRRRSRQRQRY_ REV__ENSG00000175646|ENST00000312511|PRM1 0 0.41892066650488113 2 K 1 -1 1.1092 0 0 0.068602 0 0 1162.6541199657563 323.1708162897094 1485.8249362554657 0 0 0 0 0 0 0 0 0 K 0.068602 - 6 + NaN NaN 117977.1 NaN 21116 4921 26037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26040 102.16 NaN 128290 35 0 16430 0.261 + 31614 VYILPAAYFW 10 42 621.8314780578816 1241.648403182563 2 621.831787109375 MULTI HCD FTMS 0 0 0 26037 56496.60546875 1 0 0 3 Unmodified _VYILPAAYFW_ ENSG00000014919|ENST00000016171|COX15;nc|ENSG00000014919|Q7KZN9-2|COX15 49.66892048692302 0.07899359579892996 2 Y{M(Oxidation (M))|F}W 3 7 34.693 0 0 2.7941 0 0 727.4254449533408 0 727.4254449533408 0 13.762874945799766 0 0 0 1 0 0 0 + Y{M(Oxidation (M))|F}W 2.7941 + + 43 NaN NaN 128446.1 NaN 21117 4921 26037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26042 102.16 NaN 87234 35 0 9949.2 0.327 + 32484 WEVIRSETF 9 40 583.7960924517432 1165.5776319702863 2 583.7966918945312 MULTI HCD FTMS 0 0 0 26041 42095.40234375 0.35913664619663693 1 -0.0262298583984375 1 Unmodified _WEVIRSETF_ REV__ENSG00000142185|ENST00000397928|TRPM2;REV__nc|ENSG00000142185|O94759-2|TRPM2;REV__nc|ENSG00000142185|O94759-3|TRPM2 8.155526934196011 0.2891920862272901 2 {I|L}{M(Oxidation (M))|F} 2 -1 14.949 0 0 1.2825 0 0 887.4160023419937 0 887.4160023419937 0 1.4093282777197658 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.2825 - 25 NaN NaN 103220.3 NaN 21118 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26043 102.17 NaN 129850 35 0 13836 0.262 + 28062 TGPPLELDL 9 31 477.76085345102626 953.5071539688525 2 477.7607116699219 MULTI HCD FTMS 0 0 0 26041 83702.0234375 0.8130309310206951 1 -0.0262298583984375 2 Unmodified _TGPPLELDL_ REV__ENSG00000187866|ENST00000394264|PABIR1 6.723162845929126 0.3000504726104499 2 VE{I|L} 3 -1 23.188 0 0 2.4318 0 0 594.300584861525 0 594.300584861525 0 20.96910013008056 0 0 0 0 0 0 0 VE{I|L} 2.4318 - 6 NaN NaN 114207.4 NaN 21119 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26044 102.17 NaN 112480 35 0 36717 0.261 + 28264 TLLWSLTLL 9 30 530.3257840640268 1058.6370151948536 2 530.3253784179688 MULTI HCD FTMS 0 0 0 26041 17470.22265625 0.07539505397540859 14 -0.1829071044921875 3 Unmodified _TLLWSLTLL_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 10.823927491677226 0.26684000660059787 2 [{I|L}T]{I|L} 3 -1 23.301 0 0 2.201 0 0 0 728.3992887146379 728.3992887146379 23.30075608481181 0 0 0 0 0 1.5228787452803376 0 0 [{I|L}T]{I|L} 2.201 + + 9 NaN NaN 104807.3 NaN 21120 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26045 102.17 NaN 121050 35 0 25422 0.261 + 26264 SQQLRRRPL 9 29 577.3486769907876 1152.682801048375 2 577.348876953125 MULTI HCD FTMS 0 0 0 26041 12105.2841796875 0.16079364418018793 -5 0.0711517333984375 4 Unmodified _SQQLRRRPL_ REV__ENST00000485230.5_2_3:112930474-112968600:+|nuORF;REV__ENST00000495514.5_2_3:112930393-112968640:+|nuORF 1.844237919475145 0.33703635659052655 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 114336.7 NaN 21121 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26046 102.18 NaN 84704 35 0 10075 0.262 + 1719 CICPVNKSL 9 42 488.75219232816994 NaN 0 488.7528991699219 PEAK HCD FTMS 0 0 0 26041 18235.048828125 0.48276071217604105 -12 0.159759521484375 5 Unmodified _CICPVNKSL_ REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF 6.723162845929126 0.26266733336404485 2 K 1 -1 1.9897 0 0 0.20397 0 0 533.2332837268493 311.14740930728755 844.3806930341368 0 0 0 0 0 0 0 0 0 K 0.20397 + + 2 + NaN NaN 108528.4 NaN 21122 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26047 102.18 NaN 52390 35 0 4909.6 0.261 + 1691 CFYLGYTWL 9 38 583.2721557617188 NaN 0 583.2721557617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _CFYLGYTWL_ REV__ENSG00000150269|ENST00000279791|OR5M9;REV__ENSG00000174937|ENST00000641993|OR5M3 4.3292370932331545 0.2742679634796037 2 Q{M(Oxidation (M))|F}{I|L}{I|L} 4 -1 12.652 0 0 1.0864 0 0 249.05012402168114 411.16486536197505 660.2149893836562 0 0 0 0 0 0 0 0 0 Q{M(Oxidation (M))|F}{I|L}{I|L} 1.0864 - 37 + NaN NaN 102579.5 NaN 21123 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26048 102.18 NaN 251020 35 0 69946 0.264 -1 LNSGPGTL 8 48 400.7128327121894 NaN 0 400.7132568359375 PEAK HCD FTMS 0 0 0 26041 15246.4716796875 0.6214763479018927 -4 0.054931640625 7 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LNSGPGTL_ ENST00000588831.5_1_19:36427895-36428069:+|nuORF 5.230669730166228 0.38822285293237185 2 {I|L} 1 -1 1.1092 0 0 0.13876 0 0 417.19011747340386 266.11359583072505 683.3037133041289 0 0 0 0 0 0 0 0 0 {I|L} 0.13876 + + 2 + NaN NaN 130734.8 NaN 21124 4922 26041 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26050 102.19 NaN 120570 35 0 10653 0.411 + 9571 HRRKRRERPAI 11 83 492.30287809113867 1473.886804873616 3 492.30279541015625 MULTI HCD FTMS 0 0 0 26049 79330.484375 1 0 0 1 Unmodified _HRRKRRERPAI_ ENST00000462274.1_1_21:38739279-38845117:+|nuORF 0.5059551277355931 0.4167017191902429 2 DS 2 11 25.217 0 0 1.7109 0 0 1253.7539251035769 0 1253.7539251035769 0 16.237125054200234 0 0 0 0.4247425010840047 0 0 0 DS 1.7109 - 26 NaN NaN 136671.7 NaN 21125 4923 26049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26052 102.19 NaN 98893 35 0 25040 0.327 + -1 LILMATLVL 9 32 501.815518182319 NaN 0 501.81549072265625 PEAK HCD FTMS 0 0 0 26051 86305.2734375 0.34179508931010705 3 -0.0482177734375 1 Oxidation (M) _LILM(Oxidation (M))ATLVL_ REV__ENSG00000171054|ENST00000338616|OR13H1 11.640296217721598 0.23883959125015683 2 V 1 -1 11.99 0 0 1.197 0 0 131.09523729283745 768.4294180837212 899.5246553765587 0 0 0 0 0 0.5 0 0 0 V 1.197 + + 5 + NaN NaN 102405.6 NaN 21126 4924 26051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26053 102.2 NaN 199660 35 0 44795 0.261 -1 0 46 591.2781641544208 1180.5417753756415 2 591.2784423828125 MULTI HCD FTMS 0 0 0 26051 84336.9609375 0.07122919525697308 17 -0.23024749755859375 2 NaN NaN 2 VYADNT 6 -1 84.513 0 0 7.1589 0 0 0 514.2139376275999 514.2139376275999 59.296831374325905 0 0 0 0 1.805462187404089 2 0 0.3807196863200844 VYADNT 7.1589 - 378 + NaN NaN 138095.4 NaN 21127 4924 26051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26054 102.2 NaN 195250 35 0 8883.6 0.262 + 32589 WKRLRRSSRGR 11 63 486.62728928186357 1456.8600384457907 3 486.6273498535156 MULTI HCD FTMS 0 0 0 26051 120330.4609375 0.7238193214370237 -3 0.04688262939453125 3 Unmodified _WKRLRRSSRGR_ REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF 0.40826533853263924 0.41713015341995335 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.37646 0 0 988.6568046584845 305.16013513736567 1293.8169397958502 0 0 0 0 0 0.5 0 0 0 C(Carbamidomethyl (C)) 0.37646 - 15 + NaN NaN 119379.1 NaN 21128 4924 26051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26055 102.21 NaN 141770 35 0 14838 0.261 + 11412 IYPPLLGALSF 11 54 595.8446884102052 1189.6748238872103 2 595.843994140625 MULTI HCD FTMS 0 0 0 26051 42447.125 0.07554678912186037 26 -0.3580780029296875 4 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 17.11289562659939 0.30797719109864646 2 [WK]VVA{I|L}Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 10 7 [WK]VVA + + 28.06 -9.7095 -1.6645 2.3586 2.3586 59.835 0 0 0 0 17.090606190045108 0 0 0 1.4247425010840047 0 0 0 [WK]VVA{I|L}Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 2.3586 - 43 + NaN NaN 113485.7 NaN 21129 4924 26051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26056 102.21 NaN 47556 35 0 5117.1 0.262 + 33026 YCFRQAVM 8 40 509.2359559000046 NaN 0 509.235595703125 PEAK HCD FTMS 0 0 0 26051 14837.4560546875 0.5202245351294355 -13 0.18656158447265625 5 Unmodified _YCFRQAVM_ REV__ENST00000399231.7_1_15:52603151-52603319:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96632.1 NaN 21130 4924 26051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26057 102.21 NaN 45326 35 0 10097 0.261 -1 CRFMGVIMIF 10 26 645.3141447531218 NaN 0 644.8910522460938 PEAK HCD FTMS 0 0 0 26051 6432.23583984375 0.3014691484994075 -2 0.03398895263671875 6 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RFMGVIM(Oxidation (M))IF_ TBXA2R|p.V111I|1|0.27|ENSG00000006638|chr19:3600304-3600304|C/T|missense_variant 3.5964929083625545 0.337106189561315 2 {I|L} 1 -1 6.9897 0 0 0.54242 0 0 165.08268296151851 1007.4243258111936 1172.5070087727122 0 0 0 0 0 0 0 0 0 {I|L} 0.54242 + + 1 + NaN NaN 108343 NaN 21131 4924 26051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26059 102.22 NaN 331190 35 0 100390 0.327 + 16893 LYFLFAPTL 9 41 542.8073631469828 1083.6001733607654 2 542.8076782226562 MULTI HCD FTMS 0 0 0 26058 101805.015625 0.38641197106417946 4 -0.045318603515625 1 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 36.04419817259434 0.08350412372117409 2 APT{I|L} 4 5 34.253 0 0 3.161 0 0 683.3685987363369 0 683.3685987363369 0 13.283409326844264 0 0 0 1.4247425010840047 0 0.3807196863200844 0 + APT{I|L} 3.161 + + 50 + NaN NaN 157644 NaN 21132 4925 26058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26060 102.22 NaN 57642 35 0 8823.4 0.261 + 16345 LRRKWRRWHLQ 11 36 545.6603483262188 1633.9592155788564 3 545.6597900390625 MULTI HCD FTMS 0 0 0 26058 4787.11181640625 0.19703320478082217 -2 0.03037261962890625 2 Unmodified _LRRKWRRWHLQ_ ENSG00000114812|ENST00000325123|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-2|VIPR1;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1 0 0.41892066650488113 2 C(Carbamidomethyl (C)) 1 11 3.9794 0 0 0.24354 0 0 1209.7805179243626 261.1327303522094 1470.913248276572 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.24354 - 6 + NaN NaN 108122.9 NaN 21133 4925 26058 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26062 102.23 NaN 749950 35 0 220390 0.327 + 16792 LYDTIFQIF 9 48 580.305263326062 1158.595973718924 2 580.2871704101562 MULTI HCD FTMS 0 0 0 26061 45916.99609375 0.040715540047676746 -18 0.2404632568359375 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 21.74664581756881 0.17247014374749275 2 {I|L}D{M(Oxidation (M))|F}[DP]Q{I|L}{M(Oxidation (M))|F} 8 4 49.884 0 0 4.3055 0 0 165.11399583484905 0 165.11399583484905 0 26.238350322034236 0 0 0 0.4247425010840047 0 0.75 0 {I|L}D{M(Oxidation (M))|F}[DP]Q{I|L}{M(Oxidation (M))|F} 4.3055 - 341 + NaN NaN 197012.4 NaN 21134 4926 26061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26063 102.23 NaN 547910 35 0 127220 0.261 + 27296 SYQFILNLF 9 47 572.8054286322026 1143.5963043312051 2 572.8056030273438 MULTI HCD FTMS 0 0 0 26061 294923.1875 0.4070475697718482 5 -0.04926300048828125 2 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 86.33184430468982 0.004622086694044132 2 {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 67.484 0 0 5.9011 0 0 378.1527577130875 0 378.1527577130875 0 42.422750325201406 0 0 0 2.774227503252014 0 0 0.4247425010840047 + {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.9011 + + 159 NaN NaN 167335.7 NaN 21135 4926 26061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26064 102.23 NaN 146410 35 0 26978 0.261 -1 0 43 555.8167727488469 1109.6189925644937 2 555.8169555664062 MULTI HCD FTMS 0 0 0 26061 52032.45703125 0.09495215406368114 36 -0.48150634765625 3 NaN NaN 2 T{I|L}{M(Oxidation (M))|F} 3 -1 30.802 0 0 2.7759 0 0 730.4101740603907 0 730.4101740603907 0 30.80198135264581 0 0 0 1 0 0 0 T{I|L}{M(Oxidation (M))|F} 2.7759 - 7 + NaN NaN 124291 NaN 21136 4926 26061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26065 102.24 NaN 62928 35 0 7611.2 0.261 -1 KYVDIFCLL 9 39 585.8133792466052 NaN 0 585.8130493164062 PEAK HCD FTMS 0 0 0 26061 27291.39453125 0.46713876680420874 19 -0.25640869140625 4 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ ENSG00000205413|ENST00000379958|SAMD9 12.240655878213236 0.2359303321180293 2 {I|L}{M(Oxidation (M))|F} 2 -1 12.959 0 0 1.108 0 0 131.09630414606914 775.3424776666624 906.4387818127316 0 0 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 1.108 + + 4 + NaN NaN 100415.6 NaN 21137 4926 26061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26067 102.24 NaN 104690 35 0 15429 0.327 + 13824 KYPSPFFVF 9 38 566.2969506585325 1130.579348383865 2 566.2969360351562 MULTI HCD FTMS 0 0 0 26066 35888.8125 0.8103517878782079 -12 0.1856231689453125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 29.024 0 0 2.5672 0 0 866.4318608842132 0 866.4318608842132 0 11.064921830680703 0 0 0 0.805462187404089 0 0 0 + V{M(Oxidation (M))|F} 2.5672 + + 30 NaN NaN 118741.8 NaN 21138 4927 26066 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26069 102.25 NaN 232780 35 0 59168 0.327 + 2647 DVFADEFIF 9 55 551.7582195293041 1101.5018861254082 2 551.7584228515625 MULTI HCD FTMS 0 0 0 26068 79599.125 0.18123698447714348 -10 0.1444091796875 1 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 54.773552608820026 0.024892918755467567 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 39.693 0 0 3.6035 0 0 676.2690954569097 0 676.2690954569097 0 38.23186544622519 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.6035 + + 72 NaN NaN 119696.1 NaN 21139 4928 26068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26070 102.25 NaN 89334 35 0 11223 0.261 + 6927 FPVHRQKL 8 42 512.8064414100976 1023.5983298869952 2 512.8072509765625 MULTI HCD FTMS 0 0 0 26068 6071.17578125 0.07508413396389885 6 -0.06417083740234375 2 Unmodified _FPVHRQKL_ ENSG00000163913|ENST00000348417|IFT122;ENST00000448668.2_1_3:129200375-129202705:+|nuORF;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122 13.50788311687929 0.4944073034352369 2 {I|L}PE 3 7 29.085 0 0 2.8415 0 0 666.3919544904312 0 666.3919544904312 0 8.116042352767732 0 0 0 0.28872548999643577 0 0 0 {I|L}PE 2.8415 - 6 NaN NaN 95936.6 NaN 21140 4928 26068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26071 102.26 NaN 91540 35 0 23955 0.261 + 32601 WKYEVTYRK 9 29 636.8390155760051 NaN 0 636.8388061523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WKYEVTYRK_ ENSG00000142627|ENST00000358432|EPHA2;EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant;EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant;nc|ENSG00000142627|P29317-2|EPHA2 1.6526216038709556 0.28723846860855273 2 W{M(Oxidation (M))|F} 2 8 7.9588 0 0 0.62586 0 0 665.3820501835535 270.11069666080317 935.4927468443566 0 0 0 0 0 0 0 0 0 W{M(Oxidation (M))|F} 0.62586 - 5 + NaN NaN 102801.9 NaN 21141 4928 26068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26075 102.28 NaN 70225 35 0 10289 0.327 + 29734 VDPEGFQADF 10 30 562.7491835863588 1123.4838142395174 2 563.2509155273438 MULTI HCD FTMS 0 0 0 26074 20241.10546875 0.30553444321419604 -7 0.08154296875 1 Unmodified _VDPEGFQADF_ ENSG00000112624|ENST00000314073|BICRAL 5.731851221503515 0.44496410492002586 2 [DV]{M(Oxidation (M))|F} 3 7 27.447 0 0 2.4431 0 0 0 759.2974337213499 759.2974337213499 2.230749808046326 0 0 0 0 0 2 0 0 [DV]{M(Oxidation (M))|F} 2.4431 - 11 + NaN NaN 110519.9 NaN 21142 4931 26074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26076 102.28 NaN 69740 35 0 12127 0.261 -1 0 37 647.3936095318574 646.3863330652573 1 647.3930053710938 MULTI HCD FTMS 0 0 0 26074 26145.0390625 0.20796162171244945 55 -0.7222213745117188 2 NaN NaN 2 H 1 -1 3.0989 0 0 0.47943 0 0 239.10579825256042 267.1916597955688 506.2974580481292 0 0 0 0 0 0 0 0 0 H 0.47943 - 4 + NaN NaN 97174.1 NaN 21143 4931 26074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26078 102.29 NaN 847240 35 0 133100 0.327 + 16793 LYDTIFQIF 9 54 580.305263326062 1158.595973718924 2 580.3056640625 MULTI HCD FTMS 0 0 0 26077 186832.390625 0.16566810396664425 -12 0.15044403076171875 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 85.64151623876279 0.004640175941193596 2 T{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 6 3 72.428 0 0 6.2513 0 0 391.1733570783219 0 391.1733570783219 0 41.97743773147742 0 0 0 2.1747425010840047 0 1.555462187404089 0 + T{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 6.2513 + + 645 NaN NaN 221335.5 NaN 21144 4932 26077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26079 102.29 NaN 139490 35 0 29682 0.262 + 2398 DPLGLPTEL 9 37 477.76085345102626 953.5071539688525 2 477.7607116699219 MULTI HCD FTMS 0 0 0 26077 37450.65234375 0.36377303070943384 11 -0.17211151123046875 2 Unmodified _DPLGLPTEL_ ENST00000355086.7_1_12:64238100-64238409:+|nuORF 7.289230182591677 0.29575926068275815 2 VE{I|L} 3 7 26.198 0 0 2.7475 0 0 594.3026600568375 0 594.3026600568375 0 24.604093769761874 0 0 0 0 0 0 0 VE{I|L} 2.7475 - 15 NaN NaN 125576.2 NaN 21145 4932 26077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26080 102.29 NaN 61824 35 0 16248 0.261 + -1 YCDMERSEMTM 11 33 481.83424359106056 NaN 0 481.8341369628906 PEAK HCD FTMS 0 0 0 26077 12932.447265625 0.5431500953878104 7 -0.10372161865234375 3 3 Oxidation (M) _YCDM(Oxidation (M))ERSEM(Oxidation (M))TM(Oxidation (M))_ REV__ENSG00000197852|ENST00000357260|INKA2 0.09484139111097674 0.34185110575506755 2 Q 1 -1 1.9897 0 0 0.2069 0 0 569.4712082741149 261.1087740533813 830.5799823274963 0 0 0 0 0 0 0 0 0 Q 0.2069 - 1 + NaN NaN 111436.1 NaN 21146 4932 26077 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26082 102.3 NaN 114080 35 0 29736 0.327 + -1 EEMKRYKRM 9 39 434.8822201250045 NaN 0 434.8821716308594 PEAK HCD FTMS 0 0 0 26081 68504.59375 0.5194042652504056 -138 1.95172119140625 1 2 Oxidation (M) _EEM(Oxidation (M))KRYKRM(Oxidation (M))_ REV__tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1 1.0714618166137932 0.2900546878344058 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106625.3 NaN 21147 4933 26081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26083 102.3 NaN 64132 35 0 7072.5 0.261 + 23828 RRRRSRQRQRY 11 36 539.9848742019959 1616.9327932061876 3 539.985107421875 MULTI HCD FTMS 0 0 0 26081 24912.24609375 0.31979407931651943 18 -0.281036376953125 2 Unmodified _RRRRSRQRQRY_ REV__ENSG00000175646|ENST00000312511|PRM1 0 0.41892066650488113 2 P 1 -1 4.6041 0 0 0.28474 0 0 940.5452332470064 576.3126925104124 1516.8579257574188 0 0 0 0 0 0 0 0 0 P 0.28474 - 10 + NaN NaN 95500.6 NaN 21148 4933 26081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26084 102.31 NaN 69217 35 0 9598.4 0.261 + 15464 LPDLLIFQM 9 30 545.3045915420705 1088.594630150941 2 545.3043212890625 MULTI HCD FTMS 0 0 0 26081 18693.81640625 0.22711577937462324 -5 0.04795074462890625 3 Unmodified _LPDLLIFQM_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 9.38312468134398 0.279288223203164 2 {I|L}{M(Oxidation (M))|F}QM 4 5 22.875 0 0 2.1014 0 0 551.3304310529312 0 551.3304310529312 0 22.78659694992122 0 0 0 0.8182503180159344 0 0 0 + {I|L}{M(Oxidation (M))|F}QM 2.1014 + + 9 NaN NaN 100479.4 NaN 21149 4933 26081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26085 102.31 NaN 54558 35 0 5861.7 0.261 + 16644 LWDPVIELI 9 37 549.3159124918617 NaN 0 549.3150024414062 PEAK HCD FTMS 0 0 0 26081 5570.48974609375 0.140601944011445 -1 0.01279449462890625 4 Unmodified _LWDPVIELI_ ENSG00000120800|ENST00000261637|UTP20 10.823927491677226 0.2427956001690155 2 E 1 8 11.99 0 0 1.0933 0 0 723.3975282534515 241.15537439517814 964.5529026486296 0 0 0 0 0 0.5 0 0 0 + E 1.0933 + + 1 + NaN NaN 101284.9 NaN 21150 4933 26081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26087 102.31 NaN 186890 35 0 53238 0.327 + 23936 RTRLRNQIP 9 38 577.3486769907876 1152.682801048375 2 577.348876953125 MULTI HCD FTMS 0 0 0 26086 50251.34375 0.66748508887318 7 -0.11058807373046875 1 Unmodified _RTRLRNQIP_ ENSG00000135473|ENST00000440411|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000550555.1_1_12:56719046-56720180:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant 4.3292370932331545 0.3181982124262546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 128748.4 NaN 21151 4934 26086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26088 102.32 NaN 56472 35 0 8976.4 0.263 + 23865 RSNDAYAL 8 36 455.2251671932056 NaN 0 455.22509765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RSNDAYAL_ REV__ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;REV__ENSG00000175054|ENST00000350721|ATR;REV__nc|ENSG00000175054|Q13535-2|ATR;REV__nc|ENSG00000175054|Q13535-3|ATR 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94425.6 NaN 21152 4934 26086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26089 102.32 NaN 62527 35 0 5161.8 0.261 + 13630 KYPENFFLL 9 35 585.8132432729736 1169.6119336127472 2 585.813232421875 MULTI HCD FTMS 0 0 0 26086 50268.5234375 0.9723983402477085 -24 0.31340789794921875 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3649159162125 0 778.3649159162125 0 27.21848749616356 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 13 NaN NaN 104199.3 NaN 21153 4934 26086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26091 102.33 NaN 187280 35 0 53495 0.327 + 28462 TPLVFITVL 9 32 501.81527074221606 1001.6159885512321 2 501.8153381347656 MULTI HCD FTMS 0 0 0 26090 82630.5078125 0.3684561587299198 -13 0.16664886474609375 1 Unmodified _TPLVFITVL_ REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1 21.74664581756881 0.17247014374749275 2 M[{I|L}T]V{I|L} 5 -1 34.08 0 0 3.4025 0 0 426.28355605293126 0 426.28355605293126 0 34.080306233405295 0 0 0 1 0 0.4247425010840047 0 M[{I|L}T]V{I|L} 3.4025 - 16 NaN NaN 137034.4 NaN 21154 4935 26090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26092 102.33 NaN 65422 35 0 6198.2 0.261 + -1 KEMKKKLPRKF 11 42 492.30287809113867 1473.886804873616 3 492.302978515625 MULTI HCD FTMS 0 0 0 26090 34538.67578125 0.4353770943586275 12 -0.1886444091796875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KEMKKKLPRKF_ REV__ENSG00000213949|ENST00000282588|ITGA1;REV__ENST00000504669.5_1_5:52201585-52248278:+|nuORF;REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109745.8 NaN 21155 4935 26090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26093 102.34 NaN 44025 35 0 6344.7 0.261 -1 CRFMGVIMIF 10 25 645.3137529938534 1288.6129530545068 2 645.3133544921875 MULTI HCD FTMS 0 0 0 26090 10889.4482421875 0.26048650925588585 1 -0.01625823974609375 3 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))RFMGVIM(Oxidation (M))IF_ TBXA2R|p.V111I|1|0.27|ENSG00000006638|chr19:3600304-3600304|C/T|missense_variant 6.723162845929126 0.4397169348982109 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.6273 0 0 1010.4399037858099 0 1010.4399037858099 0 15.282737771670439 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.6273 + + 8 NaN NaN 95230.7 NaN 21156 4935 26090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26094 102.34 NaN 90155 35 0 13890 0.261 + 27969 TFDAVLIVGAL 11 42 559.826201327441 1117.637849721682 2 559.8265991210938 MULTI HCD FTMS 0 0 0 26090 24979.806640625 0.0217978825354022 -14 0.17954254150390625 4 Unmodified _TFDAVLIVGAL_ ENSG00000165171|ENST00000297873|METTL27 8.745405648335112 0.3805662881914433 2 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 8 24.45 0 0 2.1877 0 0 646.3289662091812 0 646.3289662091812 0 8.965912507003608 0 0 0 0.8252574989159953 0 0 0 {I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 2.1877 - 13 NaN NaN 95254.5 NaN 21157 4935 26090 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26096 102.34 NaN 205620 35 0 56874 0.327 + 16894 LYFLFAPTL 9 34 542.8073631469828 1083.6001733607654 2 542.8076782226562 MULTI HCD FTMS 0 0 0 26095 75235.6953125 0.2855652360702358 15 -0.23555755615234375 1 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 18.13498045792455 0.20367413111508956 2 AM 2 8 20.969 0 0 1.9351 0 0 683.3688012124977 195.1384676568969 878.5072688693946 0 0 0 0 0 1 0 0 0 AM 1.9351 - 10 + NaN NaN 127117.4 NaN 21158 4936 26095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26097 102.35 NaN 114280 35 0 5312.9 0.261 + 32590 WKRLRRSSRGR 11 64 486.62728928186357 1456.8600384457907 3 486.6269836425781 MULTI HCD FTMS 0 0 0 26095 85849.34375 0.5164063467787611 9 -0.1397705078125 2 Unmodified _WKRLRRSSRGR_ REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF 0.40826533853263924 0.41713015341995335 2 [WK]R 3 -1 8.072 0 0 0.55407 0 0 0 983.5660375515125 983.5660375515125 0.21529987308660914 0 0 0 0 0 0 0 0 [WK]R 0.55407 + + 26 NaN NaN 112646.1 NaN 21159 4936 26095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26098 102.35 NaN 126600 35 0 11161 0.261 + 11413 IYPPLLGALSF 11 46 595.8446884102052 1189.6748238872103 2 595.84521484375 MULTI HCD FTMS 0 0 0 26095 16898.654296875 0.03007598447737592 38 -0.500640869140625 3 Unmodified _IYPPLLGALSF_ ENST00000380338.8_1_9:20622330-20622507:-|nuORF 13.042465956692817 0.3434429782671734 2 Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 4 8 18.188 0 0 1.5288 0 0 696.4193638853802 0 696.4193638853802 0 7.2184874961635614 0 0 0 0.5 0 0 0 Q{I|L}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.5288 - 45 NaN NaN 111442.9 NaN 21160 4936 26095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26100 102.36 NaN 361160 35 0 76396 0.327 + 27297 SYQFILNLF 9 49 572.8054286322026 1143.5963043312051 2 572.8056640625 MULTI HCD FTMS 0 0 0 26099 176284.40625 0.2433045016263284 16 -0.255126953125 1 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 47.594388314883695 0.03493607795751234 2 {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 6 3 59.857 0 0 5.2341 0 0 378.15729173530514 0 378.15729173530514 0 35.41956270212445 0 0 0 2.3494850021680094 0 0 0.3252574989159953 + {M(Oxidation (M))|F}{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5.2341 + + 124 + NaN NaN 153407.1 NaN 21161 4937 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26101 102.36 NaN 112180 35 0 12825 0.261 + 33726 YLDKQAPSLF 10 49 591.3151578330928 NaN 0 591.29638671875 PEAK HCD FTMS 0 0 0 26099 6459.12548828125 0.7368794538788603 -1 0.0129241943359375 2 Unmodified _YLDKQAPSLF_ REV__ENSG00000197619|ENST00000598071|ZNF615;REV__ENSG00000198093|ENST00000354957|ZNF649;REV__ENST00000599671.1_1_19:52399719-52400225:-|nuORF;REV__nc|ENSG00000197619|Q8N8J6-3|ZNF615;REV__nc|ENSG00000197619|Q8N8J6|ZNF615 7.289230182591677 0.3339457182549222 2 {I|L}{M(Oxidation (M))|F}N 3 -1 12.307 0 0 1.0424 0 0 492.2596969144293 311.1468905084594 803.4065874228887 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F}N 1.0424 - 66 + NaN NaN 127653.9 NaN 21162 4937 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26102 102.36 NaN 85895 35 0 11273 0.263 + 15882 LPLIGVIVI 9 36 468.82812494298565 935.6416969527713 2 468.8279724121094 MULTI HCD FTMS 0 0 0 26099 48951.37890625 0.08215213035178728 -11 0.1295623779296875 3 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 14.581692164780916 0.23437375358055648 2 V{I|L} 2 -1 25.217 0 0 2.6951 0 0 705.4775123632601 0 705.4775123632601 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.6951 + + 5 NaN NaN 106527.5 NaN 21163 4937 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26103 102.37 NaN 167580 35 0 25165 0.261 -1 MYIIPVVLF 9 51 555.8168660238879 1109.6191791145757 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26099 54754.578125 0.06123614892616432 -32 0.39697265625 4 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 2 QV{I|L}{M(Oxidation (M))|F} 4 -1 35.918 0 0 3.2369 0 0 604.3332386701187 0 604.3332386701187 0 30.956837818197798 0 0 0 0.8494850021680094 0 0 0 QV{I|L}{M(Oxidation (M))|F} 3.2369 - 94 NaN NaN 116163.6 NaN 21164 4937 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26104 102.37 NaN 57699 35 0 8863.6 0.261 + 31683 VYKPAGVAPGC 11 37 531.2776805613524 NaN 0 531.2789306640625 PEAK HCD FTMS 0 0 0 26099 49525.546875 1 0 0 5 Unmodified _VYKPAGVAPGC_ REV__ENSG00000214279|ENST00000640237|SCART1;REV__ENST00000482993.6_3_10:135267501-135271093:+|nuORF;REV__ENST00000488261.6_3_10:135269754-135270707:+|nuORF;REV__nc|ENSG00000214279|Q4G0T1-2|SCART1;REV__nc|ENSG00000214279|Q4G0T1-3|SCART1 2.9952420565917617 0.33362350433860827 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104251.7 NaN 21165 4937 26099 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26106 102.38 NaN 177770 35 0 19370 0.327 + 14681 LGYLLLGLL 9 50 487.8179080602293 973.6212631872586 2 487.81793212890625 MULTI HCD FTMS 0 0 0 26105 144640.734375 0.9215804979099442 -8 0.10637664794921875 1 Unmodified _LGYLLLGLL_ ENSG00000173338|ENST00000340313|KCNK7 56.04830969593885 0.023109620888794903 2 [{I|L}A][Y{I|L}]V{I|L}G{I|L}{I|L} 9 2 + 68.835 0 0 7.07 7.07 86.794 0 0 0 10.654755048755362 41.88547520912806 10.654755048755362 2.2577249674798594 0 1.774227503252014 1.5228787452803376 0 0 [{I|L}A][Y{I|L}]V{I|L}G{I|L}{I|L};[{I|L}A][Y{I|L}]VVA{I|L}{I|L};[{I|L}A][Y{I|L}]{I|L}VG{I|L}{I|L};[{I|L}A][YV]{I|L}{I|L}G{I|L}{I|L};[{I|L}A][YV]{I|L}VA{I|L}{I|L} 7.07;6.8381;6.5438;6.5026;6.2707 -;-;-;-;- 192 NaN NaN 119080 NaN 21166 4938 26105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26107 102.38 NaN 95788 35 0 13831 0.261 + 13825 KYPSPFFVF 9 35 566.2969506585325 1130.579348383865 2 566.2980346679688 MULTI HCD FTMS 0 0 0 26105 36124.77734375 0.815679758342798 -1 0.01959991455078125 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 11.494710602746466 0.2610445893512368 2 {[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 10 5 + 33.913 0 0 2.9996 2.9996 82.794 0 0 0 6.478174818886373 12.944087325889981 6.478174818886373 6.532125137753436 0 0.4247425010840047 0 0 0 {[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.9996;2.4219 -;- 54 NaN NaN 109928 NaN 21167 4938 26105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26108 102.38 NaN 104800 35 0 7999.5 0.261 + 16645 LWDPVIELI 9 45 549.3159124918617 NaN 0 549.3164672851562 PEAK HCD FTMS 0 0 0 26105 27477.83984375 0.6935544046150676 4 -0.0683746337890625 3 Unmodified _LWDPVIELI_ ENSG00000120800|ENST00000261637|UTP20 36.12702656103203 0.09069617296470832 2 {I|L}E{I|L} 3 6 28.188 0 0 2.5704 0 0 131.0962568364841 607.2869356744749 738.3831925109589 0 0 0 0 0 1.3494850021680094 0 0 0 + {I|L}E{I|L} 2.5704 + + 29 + NaN NaN 113084.7 NaN 21168 4938 26105 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26110 102.39 NaN 627650 35 0 214890 0.327 + 2648 DVFADEFIF 9 66 551.7582195293041 1101.5018861254082 2 551.7584838867188 MULTI HCD FTMS 0 0 0 26109 336574.65625 0.7663372650161815 1 -0.01956939697265625 1 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 112.59319219568356 0.00251905749371435 2 [DV]{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L} 7 3 63.064 0 0 5.7253 0 0 0 162.0566477637964 162.0566477637964 46.07463842698671 0 0 0 0 2.4247425010840047 1.3979400086720375 1.1861818737241734 0 [DV]{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L} 5.7253 - 251 NaN NaN 184927.5 NaN 21169 4939 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26111 102.39 NaN 178360 35 0 23100 0.261 + 10957 IYDKVQEWT 9 57 591.2961688172188 1180.5777847012375 2 591.2783203125 MULTI HCD FTMS 0 0 0 26109 52673.9375 0.39566064936273665 -5 0.07470703125 2 Unmodified _IYDKVQEWT_ REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4 21.536976647645854 0.1742816388551942 2 {I|L}YDT{I|L}{M(Oxidation (M))|F}N 7 -1 85.226 0 0 7.219 0 0 0 311.14728723697505 311.14728723697505 57.791229100142445 0 0 0 0 1.8851518780601921 2 0 0.3054621874040891 {I|L}YDT{I|L}{M(Oxidation (M))|F}N 7.219 - 362 + NaN NaN 123979.2 NaN 21170 4939 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26112 102.4 NaN 76956 35 0 7166 0.261 + 6928 FPVHRQKL 8 40 512.8063739990343 1023.5981950648687 2 512.8069458007812 MULTI HCD FTMS 0 0 0 26109 11933.3837890625 0.18686468330527664 2 -0.03588104248046875 3 Unmodified _FPVHRQKL_ ENSG00000163913|ENST00000348417|IFT122;ENST00000448668.2_1_3:129200375-129202705:+|nuORF;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122 8.593279151180031 0.5292430274356741 2 Q{I|L}PE 4 8 28.047 0 0 2.7401 0 0 538.3241444318375 0 538.3241444318375 0 7.078343878162343 0 0 0 0 0 0 0 Q{I|L}PE 2.7401 - 10 NaN NaN 109829.4 NaN 21171 4939 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26113 102.4 NaN 55687 35 0 8932.5 0.261 -1 0 32 479.81933226664984 957.6241116000997 2 479.819091796875 MULTI HCD FTMS 0 0 0 26109 14508.787109375 0.05248508076846336 -9 0.11930084228515625 4 NaN NaN 2 {I|L}P{I|L} 3 -1 43.188 0 0 4.5099 0 0 0 631.3779390924436 631.3779390924436 36.197887582883936 0 0 0 0 0 1.6989700043360187 0 0 {I|L}P{I|L} 4.5099 - 6 + NaN NaN 91076.4 NaN 21172 4939 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26114 102.4 NaN 110380 35 0 18757 0.261 + 6252 FPFAFPQIL 9 34 540.2997338683241 1078.584914803448 2 540.30078125 MULTI HCD FTMS 0 0 0 26109 12864.404296875 0.1698640844903336 -5 0.07470703125 5 Unmodified _FPFAFPQIL_ ENST00000548458.6_1_12:105761268-105764632:+|nuORF 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 7 20.969 0 0 1.9441 0 0 834.4036951493583 0 834.4036951493583 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}{I|L} 1.9441 + + 3 NaN NaN 131278 NaN 21173 4939 26109 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26116 102.41 NaN 124540 35 0 24333 0.326 + 2139 DFWFCFLF 8 40 562.7491835863588 1123.4838142395174 2 562.7493896484375 MULTI HCD FTMS 0 0 0 26115 66708.640625 0.6557620614569816 3 -0.04882049560546875 1 Unmodified _DFWFCFLF_ ENST00000367137.3_1_1:205760066-205760288:-|nuORF 9.347437153973935 0.5250182646323369 2 [DV]{M(Oxidation (M))|F}A 4 6 40.247 0 0 3.5824 0 0 0 688.2584322565061 688.2584322565061 11.223637474483468 0 0 0 0 0.7059771852360797 2 0 0 [DV]{M(Oxidation (M))|F}A 3.5824 - 11 + NaN NaN 125549.3 NaN 21174 4940 26115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26117 102.41 NaN 61583 35 0 8439.8 0.262 -1 PCRNGAKC 8 34 453.20950337943293 NaN 0 453.2096252441406 PEAK HCD FTMS 0 0 0 26115 34219.03515625 0.6183427155705798 3 -0.04882049560546875 2 Carbamidomethyl (C) _PCRNGAKC(Carbamidomethyl (C))_ ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94491 NaN 21175 4940 26115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26118 102.42 NaN 66660 35 0 6129.6 0.261 + 35094 YVALCEQLQ 9 40 533.7646484375 NaN 0 533.7646484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YVALCEQLQ_ REV__ENSG00000143412|ENST00000368947|ANXA9 7.910154910731844 0.25691533546754686 2 Q 1 -1 4.6041 0 0 0.43251 0 0 696.3861044416032 237.03742395572502 933.4235283973281 0 0 0 0 0 0 0 0 0 Q 0.43251 + + 5 + NaN NaN 94249 NaN 21176 4940 26115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26120 102.43 NaN 1647200 35 0 294820 0.326 + 16794 LYDTIFQIF 9 66 580.305263326062 1158.595973718924 2 580.3056030273438 MULTI HCD FTMS 0 0 0 26119 878869.4375 0.7793115147635078 -3 0.04880523681640625 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 131.26759243768294 0.0005280990274065272 2 [Y{I|L}]DT{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 9 0 + 96.736 0 0 8.3494 8.3494 89.731 0 0 0 4.259687322722812 16.478174818886373 4.259687322722812 4.259687322722812 0 2.805462187404089 0 1.9802046884880937 0.3807196863200844 + + [Y{I|L}]DT{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YT{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};[Y{I|L}]DT{I|L}{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}YT{I|L}{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}T]Y{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}[{I|L}T]Y{M(Oxidation (M))|F}[AG]{I|L}{M(Oxidation (M))|F};[Y{I|L}]D{[QV]|[N{I|L}]|[RA]|[KV]}[YV]{I|L}{M(Oxidation (M))|F};{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{I|L}{[ET]|[MV]}[YV]{I|L}{M(Oxidation (M))|F};[Q{I|L}]{M(Oxidation (M))|F}{[ET]|[MV]}[YV]{I|L}{M(Oxidation (M))|F};{NN|[MP]|[D{I|L}]|[EV]}Y{[QV]|[N{I|L}]|[RA]|[KV]}[YV]{I|L}{M(Oxidation (M))|F} 8.3494;7.9817;7.226;7.187;5.8592;5.0644;3.4266;3.402;3.1421;3.0589 +;-;-;-;-;-;-;-;-;- + 762 NaN NaN 363468.1 NaN 21177 4941 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26121 102.43 NaN 104320 35 0 10827 0.261 + 13631 KYPENFFLL 9 35 585.8132432729736 1169.6119336127472 2 585.812744140625 MULTI HCD FTMS 0 0 0 26119 37250.43359375 0.7205753685028354 -17 0.23024749755859375 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4332539036615 0 925.4332539036615 0 14.247425010840047 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 17 NaN NaN 108919.6 NaN 21178 4941 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26122 102.43 NaN 76529 35 0 9289.4 0.262 + 33811 YLIKYIAI 8 39 498.80891854796874 995.6032841627375 2 498.8092041015625 MULTI HCD FTMS 0 0 0 26119 21144.953125 0.6866991576844453 2 -0.03250885009765625 3 Unmodified _YLIKYIAI_ ENSG00000118985|ENST00000237853|ELL2;nc|ENSG00000118985|O00472-2|ELL2 9.347437153973935 0.5250182646323369 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 5 NaN NaN 104792.9 NaN 21179 4941 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26123 102.44 NaN 76548 35 0 12387 0.261 + 25621 SGIFLTFLSL 10 34 549.3159124918617 NaN 0 549.3048706054688 PEAK HCD FTMS 0 0 0 26119 15677.00390625 0.39569541027150296 7 -0.1072998046875 4 Unmodified _SGIFLTFLSL_ tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1 6.2057823575117 0.3348729994311477 2 {I|L} 1 9 5.4846 0 0 0.50013 0 0 579.3273683413421 401.18305383853755 980.5104221798797 0 0 0 0 0 0 0 0 0 + {I|L} 0.50013 + + 3 + NaN NaN 105349.1 NaN 21180 4941 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26124 102.44 NaN 95648 35 0 16453 0.261 -1 FWMICHIIF 9 28 633.8112753786481 1265.6079978240962 2 633.8114013671875 MULTI HCD FTMS 0 0 0 26119 34446.57421875 0.2733750852134545 -18 0.238006591796875 5 Carbamidomethyl (C) _FWMIC(Carbamidomethyl (C))HIIF_ ENSG00000146802|ENST00000312814|TMEM168;TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant 5.230669730166228 0.3113646817964458 2 W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 5 -1 33.456 0 0 2.6434 0 0 516.2250843732437 0 516.2250843732437 0 28.85151878060192 0 0 0 1.4247425010840047 0 0 0 W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 2.6434 - 15 NaN NaN 115917.7 NaN 21181 4941 26119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26126 102.44 NaN 117830 35 0 18877 0.327 -1 0 46 479.81933226664984 957.6241116000997 2 479.8193359375 MULTI HCD FTMS 0 0 0 26125 72592.6953125 0.262601790759968 -6 0.10089874267578125 1 NaN NaN 2 {I|L}P{I|L}[R{I|L}]{I|L} 6 -1 49.754 0 0 5.1956 0 0 0 249.1230867975219 249.1230867975219 38.51728122573242 0 0 0 0 0.8494850021680094 1.5228787452803376 0 0 {I|L}P{I|L}[R{I|L}]{I|L} 5.1956 - 15 + NaN NaN 115207.7 NaN 21182 4942 26125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26127 102.45 NaN 111730 35 0 17135 0.261 + 15465 LPDLLIFQM 9 36 545.3045915420705 1088.594630150941 2 545.303955078125 MULTI HCD FTMS 0 0 0 26125 34224.0234375 0.41579608932847223 4 -0.0585174560546875 2 Unmodified _LPDLLIFQM_ ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF 18.1463463914782 0.20357593197100715 2 {I|L}{M(Oxidation (M))|F}QM 4 5 41.938 0 0 3.8525 0 0 551.3328724591812 0 551.3328724591812 0 36.8765315847925 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F}QM 3.8525 + + 27 NaN NaN 105360 NaN 21183 4942 26125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26128 102.45 NaN 94230 35 0 13738 0.261 + 11245 IYLIAYKI 8 36 498.80891854796874 995.6032841627375 2 498.8092346191406 MULTI HCD FTMS 0 0 0 26125 20904.140625 0.6788785803612273 3 -0.03887176513671875 3 Unmodified _IYLIAYKI_ REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1 13.50788311687929 0.4944073034352369 2 C{I|L} 2 -1 16.454 0 0 1.6526 0 0 761.5015736310562 0 761.5015736310562 0 15.740312677277187 0 0 0 0 0 0 0 C{I|L} 1.6526 - 7 NaN NaN 127273.6 NaN 21184 4942 26125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26130 102.46 NaN 99114 35 0 25536 0.327 + 28463 TPLVFITVL 9 31 501.81527074221606 1001.6159885512321 2 501.8153381347656 MULTI HCD FTMS 0 0 0 26129 105181.296875 0.46901196232187714 -5 0.0813140869140625 1 Unmodified _TPLVFITVL_ REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1 15.847184025352803 0.2234401846867398 2 V{I|L} 2 -1 25.969 0 0 2.5927 0 0 771.4537302037005 0 771.4537302037005 0 25.969100130080562 0 0 0 0.5 0 0 0 V{I|L} 2.5927 + + 4 NaN NaN 104279.2 NaN 21185 4943 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26131 102.46 NaN 82280 35 0 8816 0.261 + 14335 LDQRSCLDGLF 11 45 633.8112753786481 1265.6079978240962 2 633.8123168945312 MULTI HCD FTMS 0 0 0 26129 32817.78125 0.2604486498065705 -16 0.21453857421875 2 Unmodified _LDQRSCLDGLF_ REV__ENSG00000147383|ENST00000370274|NSDHL 3.3557259375316324 0.404203592500566 2 W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 5 -1 25.445 0 0 2.0105 0 0 516.2214222638687 0 516.2214222638687 0 24.47621246364342 0 0 0 0.9247425010840047 0 0 0 W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 2.0105 - 7 NaN NaN 93310.7 NaN 21186 4943 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26132 102.47 NaN 52737 35 0 5538.9 0.262 + -1 YVWMLEPL 8 36 533.7666015625 NaN 0 533.7666015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YVWM(Oxidation (M))LEPL_ REV__ENSG00000155744|ENST00000681958|HYCC2;REV__ENST00000286181.7_1_2:201845995-201881890:-|nuORF;REV__ENST00000498780.5_1_2:201862166-201888732:-|nuORF;REV__nc|ENSG00000155744|Q8IXS8|HYCC2 5.760428011301431 0.38822285293237185 2 Q 1 -1 3.9794 0 0 0.37347 0 0 697.4053485822282 237.03705774478752 934.4424063270156 0 0 0 0 0 0 0 0 0 Q 0.37347 - 1 + NaN NaN 89683.9 NaN 21187 4943 26129 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26134 102.47 NaN 1493500 35 0 407660 0.327 + 4588 EYLQLLNLL 9 65 559.826201327441 1117.637849721682 2 559.8265991210938 MULTI HCD FTMS 0 0 0 26133 538603.3125 0.4699961015694946 -5 0.081329345703125 1 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 155.02607137521346 3.513045939247001E-06 2 [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L} 9 0 + 104.86 0 0 9.3824 9.3824 93.719 0 0 0 12.028937514676485 16.478174818886373 12.028937514676485 9.208187539523749 0 2.305462187404089 0 2.197621246364342 1.1237125054200234 + + [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}Q{I|L}{I|L}GG{I|L}{I|L};[Q{I|L}]YE{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}N{I|L}{I|L};[Q{I|L}]YE{I|L}{I|L}GG{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}GG{I|L}{I|L} 9.3824;8.5585;8.3062;7.9331;7.4823;6.7331 +;-;-;-;-;- + 557 NaN NaN 326639.5 NaN 21188 4944 26133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26135 102.48 NaN 57381 35 0 19343 0.261 -1 DYMNLLGMIF 10 21 624.7851990701316 1247.5558452070632 2 624.7854614257812 MULTI HCD FTMS 0 0 0 26133 19355.685546875 0.1437146750095074 46 -0.5741653442382812 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 8.155526934196011 0.43213520406898465 2 {I|L}[WM]{M(Oxidation (M))|F} 4 -1 23.94 0 0 1.919 0 0 652.254198142775 0 652.254198142775 0 21.175952772115174 0 0 0 0.9247425010840047 0 0 0 {I|L}[WM]{M(Oxidation (M))|F} 1.919 - 5 NaN NaN 99428.5 NaN 21189 4944 26133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26136 102.48 NaN 85567 35 0 12671 0.261 + 16895 LYFLFAPTL 9 46 542.8073631469828 1083.6001733607654 2 542.8076171875 MULTI HCD FTMS 0 0 0 26133 33531.33984375 0.1272718347116927 23 -0.29355621337890625 3 Unmodified _LYFLFAPTL_ ENSG00000057252|ENST00000367619|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;nc|ENSG00000057252|P35610-3|SOAT1 7.910154910731844 0.2910521888787154 2 A 1 8 16.237 0 0 1.4984 0 0 329.1939277337087 680.3457056666246 1009.5396334003333 0 0 0 0 0 0.9247425010840047 0 0 0 + A 1.4984 + + 14 + NaN NaN 107713.3 NaN 21190 4944 26133 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26138 102.48 NaN 182530 35 0 24140 0.327 + 10958 IYDKVQEWT 9 45 591.2961688172188 1180.5777847012375 2 591.2963256835938 MULTI HCD FTMS 0 0 0 26137 49600.14453125 0.3725718320131273 1 -0.01964569091796875 1 Unmodified _IYDKVQEWT_ REV__nc|ENSG00000104731|Q8TBB5-3|KLHDC4 18.1463463914782 0.20357593197100715 2 [Y{I|L}]D[{I|L}T]{M(Oxidation (M))|F} 6 -1 48.671 0 0 4.1226 0 0 0 425.1796053522094 425.1796053522094 22.60090614668492 0 0 0 0 1.274227503252014 2 0.3252574989159953 0 [Y{I|L}]D[{I|L}T]{M(Oxidation (M))|F} 4.1226 - 215 + NaN NaN 122685.6 NaN 21191 4945 26137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26139 102.49 NaN 78628 35 0 9055 0.262 -1 GRLWLVVM 8 43 495.2839044231451 988.5532559130902 2 495.28399658203125 MULTI HCD FTMS 0 0 0 26137 42372.23046875 0.5910761394843417 -3 0.03887176513671875 2 Oxidation (M) _GRLWLVVM(Oxidation (M))_ ENSG00000183153|ENST00000578689|GJD3;nc|ENSG00000183153|Q8N144-2|GJD3 2.8892196856762586 0.5377058178582064 2 V 1 -1 5.4846 0 0 0.55481 0 0 114.0886085515652 772.3944835608371 886.4830921124023 0 0 0 0 0 0 0 0 0 V 0.55481 + + 3 + NaN NaN 101611.5 NaN 21192 4945 26137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26140 102.49 NaN 80768 35 0 8864.4 0.261 + 11020 IYEPNFIFF 9 35 595.3004495064499 1188.5863460796998 2 595.2994995117188 MULTI HCD FTMS 0 0 0 26137 12639.013671875 0.030058961536717856 -24 0.3355712890625 3 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 18.1463463914782 0.20357593197100715 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 33.812 0 0 2.8447 0 0 763.3553944318375 0 763.3553944318375 0 29.83288122256525 0 0 0 0.7614393726401688 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.8447 + + 8 NaN NaN 100444.1 NaN 21193 4945 26137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26141 102.5 NaN 122520 35 0 14107 0.261 + -1 YLQFRCLGT 9 38 579.2928408532024 NaN 0 579.2921752929688 PEAK HCD FTMS 0 0 0 26137 37286.890625 0.769211131502473 8 -0.1282806396484375 4 Carbamidomethyl (C) _YLQFRC(Carbamidomethyl (C))LGT_ REV__LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant 8.155526934196011 0.2557262968844962 2 {I|L} 1 -1 6.9897 0 0 0.60435 0 0 132.08464242819565 908.381397225969 1040.4660396541647 0 0 0 0 0 0 0 0 0 {I|L} 0.60435 + + 12 + NaN NaN 112159.4 NaN 21194 4945 26137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26142 102.5 NaN 35730 35 0 5561.5 0.261 + 1889 CYKLQFLF 8 30 531.2776805613524 NaN 0 531.277587890625 PEAK HCD FTMS 0 0 0 26137 10119.0810546875 0.20432043042810924 8 -0.1282806396484375 5 Unmodified _CYKLQFLF_ ENST00000342266.4_1_6:131571499-131571742:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96350.9 NaN 21195 4945 26137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26144 102.5 NaN 435950 35 0 131210 0.327 + 15883 LPLIGVIVI 9 46 468.82812494298565 935.6416969527713 2 468.82818603515625 MULTI HCD FTMS 0 0 0 26143 502393.25 0.8431361216790659 -2 0.0326385498046875 1 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 36.466142684027034 0.08156716203802528 2 QV{I|L}V{I|L} 5 -1 49.464 0 0 5.2866 0 0 365.2563648908219 0 365.2563648908219 0 49.085346582070066 0 0 0 1.5 0 0 0 QV{I|L}V{I|L} 5.2866 - 22 NaN NaN 154228.7 NaN 21196 4946 26143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26145 102.51 NaN 241840 35 0 45063 0.261 -1 MYIIPVVLF 9 42 555.8168660238879 1109.6191791145757 2 556.318359375 MULTI HCD FTMS 0 0 0 26143 54785.171875 0.0907155010567884 -21 0.2857208251953125 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 36.466142684027034 0.08156716203802528 2 MRV{I|L}{M(Oxidation (M))|F} 5 -1 42.792 0 0 3.8564 0 0 445.25459487129064 0 445.25459487129064 0 35.80198135264581 0 0 0 1.2614393726401687 0 0 0 MRV{I|L}{M(Oxidation (M))|F} 3.8564 - 82 NaN NaN 130998.6 NaN 21197 4946 26143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26146 102.51 NaN 175260 35 0 29221 0.261 + 27298 SYQFILNLF 9 38 572.8054286322026 1143.5963043312051 2 572.8060302734375 MULTI HCD FTMS 0 0 0 26143 22180.978515625 0.030613779392801164 25 -0.302825927734375 3 Unmodified _SYQFILNLF_ ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B 15.248480904072842 0.22861284681709862 2 {I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 5 4 27.218 0 0 2.3801 0 0 525.2206288068375 0 525.2206288068375 0 22.78151250383644 0 0 0 0.8494850021680094 0 0 0 + {I|L}{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F} 2.3801 + + 15 NaN NaN 125368.3 NaN 21198 4946 26143 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26148 102.52 NaN 311070 35 0 102860 0.327 + 2649 DVFADEFIF 9 55 551.7582195293041 1101.5018861254082 2 551.758544921875 MULTI HCD FTMS 0 0 0 26147 158962.15625 0.3619364138077461 9 -0.119476318359375 1 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 61.357469665136826 0.01568246967499496 2 T{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 7 4 47.523 0 0 4.3144 0 0 113.05561034591445 0 113.05561034591445 0 22.93591667352487 0 0 0 1.8807196863200843 0 0 0 T{M(Oxidation (M))|F}[WE]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 4.3144 - 148 + NaN NaN 138495.8 NaN 21199 4947 26147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26149 102.52 NaN 322700 35 0 39110 0.261 -1 LMSVIVAII 9 55 487.80190805858444 973.5892631839689 2 487.8178405761719 MULTI HCD FTMS 0 0 0 26147 18765.55078125 0.33811712778358277 -1 0.012969970703125 2 Oxidation (M) _LM(Oxidation (M))SVIVAII_ tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1 13.50788311687929 0.24365122550260465 2 {I|L}V[{M(Oxidation (M))|F}T]VVA{I|L}{I|L} 9 -1 + 34.895 0 0 3.5841 3.5841 81.878 0 0 0 9.488474775526193 0.024524623765536546 0.024524623765536546 3.010299956639816 0 0 0 0 0 {I|L}V[{M(Oxidation (M))|F}T]VVA{I|L}{I|L};{I|L}V[{M(Oxidation (M))|F}T]V{I|L}G{I|L}{I|L};{I|L}V[{M(Oxidation (M))|F}T]{I|L}VG{I|L}{I|L};{I|L}V{[MG]|[TS]}{I|L}{[ES]|[DT]|[{I|L}C]}{I|L}{I|L} 3.5841;3.2749;2.557;1.4773 -;-;-;- 277 + NaN NaN 136857.6 NaN 21200 4947 26147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26150 102.52 NaN 59615 35 0 11843 0.261 -1 KMHWIISP 8 24 514.273421818557 NaN 0 514.273193359375 PEAK HCD FTMS 0 0 0 26147 4564.7431640625 0.25671124905977377 1 -0.01624298095703125 3 Oxidation (M) _KM(Oxidation (M))HWIISP_ ENST00000369162.6_1_6:101049695-101049773:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103249.5 NaN 21201 4947 26147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26151 102.53 NaN 24006 35 0 3273.5 0.261 -1 PALMVTAEKDF 11 27 619.308493678249 NaN 0 619.3084716796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _PALM(Oxidation (M))VTAEKDF_ ENSG00000120915|ENST00000521400|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;nc|ENSG00000120915|P34913-3|EPHX2 1.3295316138638542 0.3383486451652214 2 H 1 -1 2.4743 0 0 0.20008 0 0 618.7733461438041 477.73505579166255 1096.5084019354667 0 0 0 0 0 0 0 0 0 H 0.20008 - 3 + NaN NaN 102341.4 NaN 21202 4947 26147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26153 102.53 NaN 178840 35 0 48479 0.411 + 19508 NRHNIISLL 9 49 540.3191408126801 NaN 0 540.300048828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NRHNIISLL_ REV__ENST00000359175.8_1_3:161089388-161089460:-|nuORF 2.0597508629832335 0.2852655770354268 2 {I|L} 1 -1 6.9897 0 0 0.64802 0 0 131.13332353906907 831.3828254415068 962.516148980576 0 0 0 0 0 0 0 0 0 {I|L} 0.64802 + + 3 + NaN NaN 166895 NaN 21203 4948 26152 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26155 102.54 NaN 50200 35 0 5702 0.327 + 6607 FPLPAARRP 9 32 512.8063739990343 1023.5981950648687 2 512.806396484375 MULTI HCD FTMS 0 0 0 26154 33267.0546875 0.5209283258262974 12 -0.1491851806640625 1 Unmodified _FPLPAARRP_ REV__ENST00000526623.2_1_11:64948704-64948845:-|nuORF 3.944395688203298 0.32111559684428237 2 {I|L}PE 3 -1 23.188 0 0 2.2653 0 0 666.3912220685562 0 666.3912220685562 0 16.197887582883936 0 0 0 0 0 0 0 {I|L}PE 2.2653 - 8 NaN NaN 92977.7 NaN 21204 4949 26154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26156 102.54 NaN 86906 35 0 13101 0.261 + 35225 YVMMIYFDM 9 34 606.7606122640724 1211.5066715949447 2 607.26171875 MULTI HCD FTMS 0 0 0 26154 13808.5595703125 0.39033741357483154 10 -0.12355804443359375 2 Unmodified _YVMMIYFDM_ ANO10|p.I613Yfs*10|1|0.76|ENSG00000160746|chr3:43432689-43432689|G/-|frameshift_variant;ENSG00000160746|ENST00000292246|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10 0.6014990680409731 0.3464572424761564 2 P 1 9 6.9897 0 0 0.57694 0 0 230.80282745607593 880.6325777643186 1111.4354052203946 0 0 0 0 0 0 0 0 0 P 0.57694 - 5 + NaN NaN 105889.1 NaN 21205 4949 26154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26157 102.55 NaN 27778 35 0 3962.7 0.261 + 9518 HQKVYEQSDF 10 25 640.7999293558693 NaN 0 640.8292236328125 PEAK HCD FTMS 0 0 0 26154 5479.6728515625 0.9583918608893365 -2 0.023956298828125 3 Unmodified _HQKVYEQSDF_ REV__ENSG00000112200|ENST00000370706|ZNF451;REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF;REV__nc|ENSG00000112200|Q9Y4E5-2|ZNF451 1.3295316138638542 0.339046394236575 2 T 1 -1 5.4846 0 0 0.42862 0 0 416.92217208888843 758.5911348932249 1175.5133069821134 0 0 0 0 0 0 0 0 0 T 0.42862 - 1 + NaN NaN 92070.6 NaN 21206 4949 26154 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26159 102.55 NaN 698340 35 0 124580 0.327 + 16795 LYDTIFQIF 9 49 580.305263326062 1158.595973718924 2 580.3052978515625 MULTI HCD FTMS 0 0 0 26158 334340.09375 0.296466202815803 6 -0.08270263671875 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 107.1870275148908 0.00340162908551068 2 T{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 6 3 85.24 0 0 7.3572 0 0 391.17317397285314 0 391.17317397285314 0 79.55381925439681 0 0 0 2.805462187404089 0 1.524227503252014 0.3807196863200844 + T{I|L}{M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 7.3572 + + 329 NaN NaN 195923.2 NaN 21207 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26160 102.56 NaN 188240 35 0 35236 0.261 + 25372 SEELKNIHDS 10 33 586.2818047133552 NaN 0 586.2821044921875 PEAK HCD FTMS 0 0 0 26158 12823.8466796875 0.24828753771406534 1 -0.026397705078125 2 Unmodified _SEELKNIHDS_ nc|ENSG00000034677|Q9NV58-2|RNF19A 4.897010918128616 0.3359931263921593 2 {I|L}{M(Oxidation (M))|F} 2 9 8.5835 0 0 0.73329 0 0 132.0316931079547 775.3391817682249 907.3708748761796 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.73329 - 9 + NaN NaN 120203.5 NaN 21208 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26161 102.56 NaN 143120 35 0 20189 0.261 + 10236 IHSYFSLIF 9 37 563.800321601228 1125.586090269256 2 563.80078125 MULTI HCD FTMS 0 0 0 26158 16634.4921875 0.5137357041205273 1 -0.026397705078125 3 Unmodified _IHSYFSLIF_ ENST00000501122.2_1_11:65204545-65204752:+|nuORF 15.847184025352803 0.2234401846867398 2 {I|L}{M(Oxidation (M))|F} 2 7 29.776 0 0 2.6454 0 0 847.41996962715 0 847.41996962715 0 29.776296993281406 0 0 0 0.8807196863200843 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.6454 + + 13 NaN NaN 127509.9 NaN 21209 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26162 102.56 NaN 86676 35 0 6987.6 0.261 + 29719 VDIDELLIS 9 45 508.77914346867215 1015.5437340041443 2 508.77880859375 MULTI HCD FTMS 0 0 0 26158 16216.087890625 0.18299385750284697 -9 0.12783050537109375 4 Unmodified _VDIDELLIS_ tr|U7SE95|U7SE95_FUSNUProteinRecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recAPE=3SV=1 18.1463463914782 0.20357593197100715 2 {I|L}{I|L}{[TV]|[{I|L}S]} 4 5 30.005 0 0 2.9546 0 0 571.2480335919937 0 571.2480335919937 0 30.00508444608478 0 0 0 1.3807196863200843 0 0 0 + {I|L}{I|L}{[TV]|[{I|L}S]} 2.9546 + + 16 NaN NaN 98485 NaN 21210 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26163 102.57 NaN 124990 35 0 16314 0.261 + 30125 VGAYILYFF 9 33 546.7915893977838 1091.5686258623675 2 546.7914428710938 MULTI HCD FTMS 0 0 0 26158 13189.2607421875 0.44346136461349966 -7 0.0953216552734375 5 Unmodified _VGAYILYFF_ ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF 36.466142684027034 0.08156716203802528 2 {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 41.67 0 0 3.8175 0 0 503.2722340314469 0 503.2722340314469 0 20.70107520596089 0 0 0 1.4247425010840047 0 0 0 + {I|L}Y{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.8175 + + 23 NaN NaN 106911.5 NaN 21211 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26164 102.57 NaN 111530 35 0 8436.3 0.261 + 11021 IYEPNFIFF 9 46 595.3004495064499 1188.5863460796998 2 595.2999877929688 MULTI HCD FTMS 0 0 0 26158 31946.103515625 0.07597639513287457 -19 0.2765350341796875 6 Unmodified _IYEPNFIFF_ ENSG00000087365|ENST00000322535|SF3B2 22.736283301280096 0.1639198954644489 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 31.995 0 0 2.6918 0 0 763.3539295880875 0 763.3539295880875 0 21.308422131034845 0 0 0 0.7302046884880937 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6918 + + 20 NaN NaN 107850.2 NaN 21212 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26165 102.57 NaN 47722 35 0 8044 0.261 + 19229 NKKKRLKGHK 10 33 618.9067993164062 NaN 0 618.9067993164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _NKKKRLKGHK_ REV__ENST00000603137.1_1_2:28238673-28239105:-|nuORF 0.4007161486938917 0.3398413315442166 2 W 1 -1 5.4846 0 0 0.44417 0 0 536.4400269296491 509.25538049869374 1045.6954074283428 0 0 0 0 0 0 0 0 0 W 0.44417 - 3 + NaN NaN 105784.7 NaN 21213 4950 26158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26167 102.58 NaN 105540 35 0 17370 0.327 -1 0 35 479.81933226664984 957.6241116000997 2 479.819580078125 MULTI HCD FTMS 0 0 0 26166 66815.78125 0.24170398594161294 3 -0.03964996337890625 1 NaN NaN 2 {I|L}P{I|L} 3 -1 46.995 0 0 4.9074 0 0 0 631.3806856744749 631.3806856744749 35.75765943524473 0 0 0 0 0.3807196863200844 1.6989700043360187 0 0 {I|L}P{I|L} 4.9074 - 11 + NaN NaN 108723.3 NaN 21214 4951 26166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26168 102.58 NaN 118050 35 0 10279 0.261 + 12606 KVHLMFRRLI 10 63 438.2729092362896 1311.7968983090689 3 438.2729187011719 MULTI HCD FTMS 0 0 0 26166 65262.19921875 0.35681521221453605 -7 0.1087799072265625 2 Unmodified _KVHLMFRRLI_ REV__ENST00000475441.5_1_1:28905087-28907099:-|nuORF 0.776531954647913 0.4711933975711956 2 A 1 -1 3.0989 0 0 0.23624 0 0 633.3926757522314 604.3543795221311 1237.7470552743625 0 0 0 0 0 0 0 0 0 A 0.23624 - 4 + NaN NaN 107223.8 NaN 21215 4951 26166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26169 102.59 NaN 120540 35 0 20460 0.261 + 13632 KYPENFFLL 9 38 585.8132432729736 1169.6119336127472 2 585.8134765625 MULTI HCD FTMS 0 0 0 26166 37190.6015625 0.7194179729021175 -7 0.1087799072265625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.812 0 0 2.4634 0 0 778.3653431623062 0 778.3653431623062 0 6.593793813122062 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4634 + + 46 NaN NaN 107659 NaN 21216 4951 26166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26170 102.59 NaN 62462 35 0 10142 0.261 + 29867 VFASLPGFLF 10 34 549.3049103440615 1096.5952677549228 2 549.3053588867188 MULTI HCD FTMS 0 0 0 26166 14049.4716796875 0.4085456531836306 2 -0.03249359130859375 4 Unmodified _VFASLPGFLF_ ENSG00000183813|ENST00000330953|CCR4 10.823927491677226 0.4098686510432541 2 {I|L}C(Carbamidomethyl (C)){I|L}{I|L} 4 8 33.928 0 0 3.0939 0 0 579.3055824612928 0 579.3055824612928 0 33.92790030352131 0 0 0 0.5 0 0 0 {I|L}C(Carbamidomethyl (C)){I|L}{I|L} 3.0939 - 12 NaN NaN 96858.9 NaN 21217 4951 26166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26171 102.59 NaN 137330 35 0 10104 0.261 + 8009 GFSLRYEIF 9 43 566.2973115769088 NaN 0 566.2969360351562 PEAK HCD FTMS 0 0 0 26166 18362.365234375 0.377633555069889 -15 0.23555755615234375 5 Unmodified _GFSLRYEIF_ ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462-2|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-6|NRP2;nc|ENSG00000118257|O60462|NRP2 11.640296217721598 0.23883959125015683 2 V 1 9 8.0989 0 0 0.71635 0 0 165.07774327547082 863.4100435846311 1028.487786860102 0 0 0 0 0 0.3494850021680094 0 0 0 V 0.71635 - 13 + NaN NaN 114633.8 NaN 21218 4951 26166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26173 102.6 NaN 915480 35 0 252400 0.327 + 4589 EYLQLLNLL 9 63 559.826201327441 1117.637849721682 2 559.826416015625 MULTI HCD FTMS 0 0 0 26172 362754.5 0.3165468850078623 3 -0.02727508544921875 1 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 118.0683919894846 0.0016252157255221692 2 [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L} 9 0 + 98.184 0 0 8.785 8.785 93.118 0 0 0 26.866130211356065 63.314243664528576 26.866130211356065 9.208187539523749 0 2.2614393726401687 0 2.2728787452803374 0.4247425010840047 + + [YE]{I|L}Q{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}N{I|L}{I|L};[YE]{I|L}Q{I|L}{I|L}GG{I|L}{I|L};[YE]{I|L}[AG]{I|L}{I|L}GG{I|L}{I|L} 8.785;7.9611;7.9611;6.7611 +;-;-;- + 296 NaN NaN 235275.6 NaN 21219 4952 26172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26174 102.6 NaN 214270 35 0 36132 0.261 -1 CGWIQYRRQ 9 42 633.8112753786481 1265.6079978240962 2 634.3128662109375 MULTI HCD FTMS 0 0 0 26172 55392.4453125 0.525913596496596 -7 0.115386962890625 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))GWIQYRRQ_ ENSG00000117593|ENST00000649689|DARS2 7.910154910731844 0.2910521888787154 2 E{I|L}WRE{I|L}{M(Oxidation (M))|F} 7 -1 56.675 0 0 4.4781 0 0 274.09895522285314 0 274.09895522285314 0 52.070713716500805 0 0 0 1.8494850021680094 0 0 0 E{I|L}WRE{I|L}{M(Oxidation (M))|F} 4.4781 - 86 NaN NaN 119365.8 NaN 21220 4952 26172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26175 102.61 NaN 60431 35 0 3832.3 0.261 + 32775 WRRRRPGRR 9 42 648.3929604542209 1294.7713679752417 2 648.391845703125 MULTI HCD FTMS 0 0 0 26172 40295.34765625 0.5781862937974782 -9 0.14131927490234375 3 Unmodified _WRRRRPGRR_ ENSG00000110665|ENST00000381153|C11orf21 0.9622753412299311 0.3437222896773173 2 P 1 8 5.7133 0 0 0.44126 0 0 713.4212225668417 481.26487146549067 1194.6860940323324 0 0 0 0 0 0.5 0 0 0 + P 0.44126 + + 5 + NaN NaN 104120.7 NaN 21221 4952 26172 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26178 102.62 NaN 476650 35 0 48484 0.411 -1 0 87 432.5973667377083 1294.770270813325 3 432.5974426269531 MULTI HCD FTMS 0 0 0 26177 210983.140625 0.7884618102086636 -11 0.16136932373046875 1 NaN NaN 2 T 1 -1 3.0989 0 0 0.23934 0 0 779.4643758932062 411.22414048212767 1190.6885163753338 0 0 0 0 0 0 0 0 0 T 0.23934 - 9 + NaN NaN 234733.2 NaN 21222 4954 26177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26180 102.63 NaN 656250 35 0 160680 0.327 + 18666 MYIIPVVLF 9 45 555.8168660238879 1109.6191791145757 2 555.8171997070312 MULTI HCD FTMS 0 0 0 26179 415627.15625 0.4648270027718923 -14 0.20110321044921875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 46.956 0 0 4.2317 0 0 423.1838896632069 0 423.1838896632069 0 46.95554701812867 0 0 0 2.305462187404089 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.2317 + + 50 + NaN NaN 178523.3 NaN 21223 4955 26179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26181 102.63 NaN 247900 35 0 69728 0.261 + 15884 LPLIGVIVI 9 40 468.8280540377894 935.6415551423788 2 468.82818603515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.11963627304438548 2 V{I|L}V{I|L} 4 -1 46.186 0 0 4.9363 0 0 493.32520640298844 0 493.32520640298844 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 V{I|L}V{I|L} 4.9363 + + 12 NaN NaN 135360.9 NaN 21224 4955 26179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26183 102.64 NaN 111190 35 0 26595 0.326 + 28464 TPLVFITVL 9 38 501.8152052841475 1001.615857635095 2 501.81549072265625 MULTI HCD FTMS 0 0 0 26182 14375.9677734375 0.08245713772184295 -3 0.02381134033203125 1 Unmodified _TPLVFITVL_ REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1 10.823927491677226 0.26684000660059787 2 V{I|L} 2 -1 25.217 0 0 2.5176 0 0 771.451350221769 0 771.451350221769 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.5176 + + 7 NaN NaN 106277.4 NaN 21225 4956 26182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26184 102.64 NaN 111620 35 0 25633 0.261 + 2650 DVFADEFIF 9 42 551.7582195293041 1101.5018861254082 2 551.7583618164062 MULTI HCD FTMS 0 0 0 26182 33301.66796875 0.07582362093446794 18 -0.20877838134765625 2 Unmodified _DVFADEFIF_ ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3 6 36.198 0 0 3.2862 0 0 676.2701849099511 0 676.2701849099511 0 32.21848749616356 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.2862 + + 31 + NaN NaN 112785.8 NaN 21226 4956 26182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26185 102.64 NaN 62263 35 0 5412.6 0.261 + 29645 VAPIIFLTI 9 36 493.8179290549047 NaN 0 493.818115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 7.910154910731844 0.25691533546754686 2 T 1 -1 10.485 0 0 1.0638 0 0 131.08817636977193 750.4560640924436 881.5442404622156 0 0 0 0 0 0.5 0 0 0 T 1.0638 + + 1 + NaN NaN 114150.3 NaN 21227 4956 26182 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26187 102.65 NaN 244710 35 0 23205 0.411 + 14682 LGYLLLGLL 9 46 487.8178473965853 973.6211418599706 2 488.3189697265625 MULTI HCD FTMS 0 0 0 26186 30910.33984375 0.4704554764366405 -2 0.02213287353515625 1 Unmodified _LGYLLLGLL_ ENSG00000173338|ENST00000340313|KCNK7 56.04830969593885 0.023109620888794903 2 [{I|L}A][YV]{I|L}VA{I|L}{I|L} 9 4 + 63.567 0 0 6.5289 6.5289 86.029 0 0 0 7.956349637772746 34.38039076304328 7.956349637772746 2.755762612236907 0 1.8494850021680094 1.5228787452803376 0 0 [{I|L}A][YV]{I|L}VA{I|L}{I|L};[{I|L}A][Y{I|L}]VVA{I|L}{I|L};[{I|L}A][YV]{I|L}{I|L}G{I|L}{I|L};[{I|L}A][Y{I|L}]V{I|L}G{I|L}{I|L};[{I|L}A][Y{I|L}]{I|L}VG{I|L}{I|L};{[VA]|[{I|L}G]}[Y{I|L}]{I|L}VA{I|L}{I|L};{[VA]|[{I|L}G]}[Y{I|L}]{I|L}{I|L}G{I|L}{I|L} 6.5289;6.2459;6.1424;5.8594;5.1695;4.0968;3.7103 -;-;-;-;-;-;+ + 401 NaN NaN 160399.7 NaN 21228 4957 26186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26189 102.66 NaN 58147 35 0 8835.3 0.412 + 33271 YFLAWFHMP 9 34 606.2898068179535 1210.565060702707 2 606.29052734375 MULTI HCD FTMS 0 0 0 26188 18774.830078125 0.26242767121289157 -7 0.07671356201171875 1 Unmodified _YFLAWFHMP_ REV__ENSG00000197181|ENST00000356766|PIWIL2;REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2;REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;REV__PPP3CC-PIWIL2|1|fusion 14.581692164780916 0.23437375358055648 2 [Y{M(Oxidation (M))|F}]{I|L} 3 -1 19.705 0 0 1.6278 0 0 0 784.3269374939756 784.3269374939756 9.247425010840049 0 0 0 0 0.9247425010840047 0 0 0 [Y{M(Oxidation (M))|F}]{I|L} 1.6278 + + 9 NaN NaN 120873.6 NaN 21229 4958 26188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26191 102.66 NaN 156080 35 0 25347 0.327 + 14541 LFFGPVGFNF 10 43 572.7943734349931 NaN 0 572.8056640625 PEAK HCD FTMS 0 0 0 26190 17054.3046875 1 0 0 1 Unmodified _LFFGPVGFNF_ ENSG00000072849|ENST00000158771|DERL2;ENST00000573637.5_1_17:5384531-5389413:-|nuORF;ENST00000574700.5_1_17:5384531-5389490:-|nuORF;ENST00000575209.5_1_17:5386088-5389490:-|nuORF 14.838274106304384 0.3224471714378502 2 N{I|L}{I|L} 3 10 16.198 0 0 1.4164 0 0 165.0748175713548 635.2830649452626 800.3578825166173 0 0 0 0 0 0 0 0 0 N{I|L}{I|L} 1.4164 - 29 + NaN NaN 112683.6 NaN 21230 4959 26190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26192 102.67 NaN 216490 35 0 26558 0.261 + 16996 LYIPIFSTF 9 59 550.805018420721 1099.595483908242 2 550.8050537109375 MULTI HCD FTMS 0 0 0 26190 84410.8203125 0.3280118488320053 -10 0.12355804443359375 2 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 57.47134341890925 0.0211188941628804 2 [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 53.412 0 0 4.8574 4.8574 91.36 0 0 0 20.74315068691574 19.18650092539677 19.18650092539677 53.41158292702451 0 1.805945812348389 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 4.8574 + + 108 NaN NaN 125859.7 NaN 21231 4959 26190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26193 102.67 NaN 42813 35 0 5715.1 0.261 + 6533 FPKIGAHVR 9 31 512.8066278929949 NaN 0 512.806396484375 PEAK HCD FTMS 0 0 0 26190 39578.578125 1 0 0 3 Unmodified _FPKIGAHVR_ REV__ENSG00000171448|ENST00000373656|ZBTB26 3.944395688203298 0.27613285122220627 2 P 1 -1 5.4846 0 0 0.53581 0 0 147.07259488625294 776.4537447565061 923.526339642759 0 0 0 0 0 0 0 0 0 P 0.53581 + + 1 + NaN NaN 99126 NaN 21232 4959 26190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26194 102.67 NaN 55145 35 0 6144.6 0.261 -1 LSSLPCIPLS 10 35 543.7969015016077 1085.5792500700154 2 543.7968139648438 MULTI HCD FTMS 0 0 0 26190 22134.5234375 1 0 0 4 Carbamidomethyl (C) _LSSLPC(Carbamidomethyl (C))IPLS_ ENSG00000164169|ENST00000322396|PRMT9;nc|ENSG00000164169|Q6P2P2-2|PRMT9 6.2057823575117 0.44245551207394906 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90292 NaN 21233 4959 26190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26196 102.68 NaN 288990 35 0 37874 0.327 + 16796 LYDTIFQIF 9 36 580.305263326062 1158.595973718924 2 580.3056640625 MULTI HCD FTMS 0 0 0 26195 93006.2578125 0.08247055201341519 16 -0.19391632080078125 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 52.268347100219714 0.028397529699942435 2 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 54.68 0 0 4.7195 0 0 605.3059801706632 0 605.3059801706632 0 50.70107520596089 0 0 0 2 0 0 0.4247425010840047 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4.7195 + + 105 NaN NaN 141798.7 NaN 21234 4960 26195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26197 102.68 NaN 253750 35 0 92446 0.261 + 1248 AYLQLLNLF 9 52 547.8159005750435 1093.617248216887 2 547.8161010742188 MULTI HCD FTMS 0 0 0 26195 33663.828125 0.10383396512889477 -11 0.13956451416015625 2 Unmodified _AYLQLLNLF_ ENSG00000144524|ENST00000350033|COPS7B;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B 41.8396318013385 0.056899836730939755 2 {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 5 4 53.43 0 0 4.8856 0 0 475.24418837715 0 475.24418837715 0 32.97228775315752 0 0 0 2.1747425010840047 0 0 0 + {I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 4.8856 + + 171 NaN NaN 120908.5 NaN 21235 4960 26195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26199 102.69 NaN 213110 35 0 15401 0.327 + 10814 ISYIFMVLF 9 54 566.8087517937169 1131.6029506542336 2 566.8095092773438 MULTI HCD FTMS 0 0 0 26198 31490.005859375 0.2892630994632366 -18 0.231689453125 1 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 16.942295170755138 0.21397866736869717 2 {I|L}{M(Oxidation (M))|F} 2 -1 27.831 0 0 2.4594 0 0 853.4394812712243 0 853.4394812712243 0 6.487803220352362 0 0 0 0.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.4594 + + 88 + NaN NaN 126952.2 NaN 21236 4961 26198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26200 102.69 NaN 214820 35 0 29140 0.261 + 2698 DVIDEIISL 9 48 508.77914346867215 1015.5437340041443 2 508.7789611816406 MULTI HCD FTMS 0 0 0 26198 39967.22265625 0.4510185376937102 2 -0.02706146240234375 2 Unmodified _DVIDEIISL_ ENSG00000068323|ENST00000315869|TFE3;ENST00000481606.1_1_X:48895525-48895760:-|nuORF 65.23502041540118 0.010630085227462206 2 [DV]EEV{I|L}{I|L}S{I|L} 9 3 + 62.381 0 0 6.1426 6.1426 93.664 0 0 0 12.917112166456448 33.696662315049934 12.917112166456448 62.381062318217104 0 1.9247425010840047 1.3010299956639813 0 0 [DV]EEV{I|L}{I|L}S{I|L} 6.1426 - 52 NaN NaN 120539.1 NaN 21237 4961 26198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26201 102.7 NaN 60118 35 0 27651 0.261 -1 0 25 642.3081845940959 641.3009081274959 1 642.3079223632812 MULTI HCD FTMS 0 0 0 26198 36329.04296875 0.06443088240200684 -18 0.231689453125 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99921.5 NaN 21238 4961 26198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26202 102.7 NaN 94693 35 0 19450 0.262 + -1 SYCCCCCD 8 30 564.1401388304532 NaN 0 563.800048828125 PEAK HCD FTMS 0 0 0 26198 24689.046875 0.6847171499091019 24 -0.301727294921875 4 4 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CD_ REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF 0 0.38822285293237185 2 E 1 -1 6.9897 0 0 0.62061 0 0 165.7598786357126 828.4339693658811 994.1938480015938 0 0 0 0 0 0 0 0 0 E 0.62061 - 3 + NaN NaN 98223.9 NaN 21239 4961 26198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26203 102.7 NaN 39794 35 0 5879.2 0.261 -1 TRKVAMVLK 9 42 531.3302612304688 NaN 0 531.3302612304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Oxidation (M) _TRKVAM(Oxidation (M))VLK_ ENSG00000163898|ENST00000296252|LIPH 3.2813086475875832 0.27934607848455584 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.51759 0 0 357.26162815511674 552.2848604791624 909.5464886342791 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.51759 + + 1 + NaN NaN 92760.8 NaN 21240 4961 26198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26205 102.71 NaN 511890 35 0 125430 0.411 + 33256 YFIPEFNLF 9 69 595.3004495064499 1188.5863460796998 2 595.300537109375 MULTI HCD FTMS 0 0 0 26204 219100.265625 0.5210791465288064 -7 0.08243560791015625 1 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 88.95385435242217 0.004553379958619559 2 [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 0 + 70.628 0 0 5.9422 5.9422 86.834 0 0 0 7.147642715192504 47.405899960517424 7.147642715192504 7.257724967479859 0 2.079689690656103 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YPE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YPEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YPE{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}YPEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.9422;5.3315;5.1824;4.8101;4.758;4.5717;4.1995;4.0503;3.9982;3.6259 +;-;-;-;-;-;-;-;-;- + 575 NaN NaN 248112.6 NaN 21241 4962 26204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26207 102.72 NaN 246510 35 0 32270 0.327 + 23016 RAVTRRERRL 10 78 438.2729092362896 1311.7968983090689 3 438.27276611328125 MULTI HCD FTMS 0 0 0 26206 137661.140625 0.7526499212991934 5 -0.05484771728515625 1 Unmodified _RAVTRRERRL_ nc|ENSG00000128563|Q9H875-2|PRKRIP1 1.7422754331352037 0.46608156381052757 2 A 1 9 2.4743 0 0 0.18862 0 0 589.3671630569189 648.3812517860395 1237.7484148429585 0 0 0 0 0 0 0 0 0 + A 0.18862 + + 11 + NaN NaN 140852.6 NaN 21242 4963 26206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26208 102.72 NaN 98792 35 0 15373 0.261 -1 0 46 479.8193063360034 957.6240597388069 2 479.8193359375 MULTI HCD FTMS 0 0 0 26206 20913.125 0.12399960903861948 5 -0.05484771728515625 2 NaN NaN 2 {I|L}P{I|L} 3 -1 45.674 0 0 4.7695 0 0 0 631.3784273736936 631.3784273736936 38.68440000316717 0 0 0 0 0.4247425010840047 1.5228787452803376 0 0 {I|L}P{I|L} 4.7695 - 13 + NaN NaN 111282.5 NaN 21243 4963 26206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26209 102.72 NaN 106080 35 0 6870 0.261 + 13633 KYPENFFLL 9 42 585.8132432729736 1169.6119336127472 2 585.8133544921875 MULTI HCD FTMS 0 0 0 26206 36702.58984375 0.7099778351601777 5 -0.05484771728515625 3 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.812 0 0 2.4634 0 0 778.3634510724625 0 778.3634510724625 0 24.20818753952375 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4634 + + 8 NaN NaN 105715.4 NaN 21244 4963 26206 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26211 102.73 NaN 58628 35 0 5720.4 0.327 + 23809 RRQVLSQRRP 10 39 648.3929604542209 1294.7713679752417 2 648.3926391601562 MULTI HCD FTMS 0 0 0 26210 66076.5390625 0.9481131557276803 3 -0.03504180908203125 1 Unmodified _RRQVLSQRRP_ REV__ENST00000397843.6_2_11:120278496-120291479:+|nuORF 0.5631705045366581 0.4723227536457635 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 99223 NaN 21245 4964 26210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26212 102.73 NaN 190470 35 0 49997 0.262 + 4590 EYLQLLNLL 9 37 559.826201327441 1117.637849721682 2 559.8265991210938 MULTI HCD FTMS 0 0 0 26210 179283.25 0.1564461759167311 15 -0.1901092529296875 2 Unmodified _EYLQLLNLL_ ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 40.23920728925047 0.06424668180817725 2 {I|L}{I|L}N{I|L}{I|L} 5 4 55.261 0 0 4.9444 0 0 533.2495594709 0 533.2495594709 0 48.2711470149615 0 0 0 1.8807196863200843 0 0 0 + {I|L}{I|L}N{I|L}{I|L} 4.9444 + + 161 NaN NaN 113638.6 NaN 21246 4964 26210 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26214 102.74 NaN 614460 35 0 53715 0.327 -1 0 63 432.5973667377083 1294.770270813325 3 432.5975036621094 MULTI HCD FTMS 0 0 0 26213 267588.28125 1 0 0 1 NaN NaN 2 G 1 -1 6.9897 0 0 0.53984 0 0 735.4378866353937 499.2756130986303 1234.713499734024 0 0 0 0 0 0.5 0 0 0 G 0.53984 - 12 + NaN NaN 184348.5 NaN 21247 4965 26213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26215 102.74 NaN 47240 35 0 5543.8 0.261 -1 FWMICHIIF 9 32 633.8112753786481 1265.6079978240962 2 633.8115234375 MULTI HCD FTMS 0 0 0 26213 31321.275390625 0.24857207205950418 6 -0.06734466552734375 2 Carbamidomethyl (C) _FWMIC(Carbamidomethyl (C))HIIF_ ENSG00000146802|ENST00000312814|TMEM168;TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant 2.302733041254933 0.33356062215410776 2 W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 5 -1 28.456 0 0 2.2484 0 0 516.222459861525 0 516.222459861525 0 28.455612550363796 0 0 0 0.7742275032520141 0 0 0 W{[RE]|[WV]}{I|L}{M(Oxidation (M))|F} 2.2484 - 5 NaN NaN 105695.8 NaN 21248 4965 26213 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26217 102.75 NaN 1432300 35 0 313780 0.327 + 18667 MYIIPVVLF 9 59 555.8168660238879 1109.6191791145757 2 555.817138671875 MULTI HCD FTMS 0 0 0 26216 585652.5 0.6549790891842517 -3 0.031707763671875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 49.966 0 0 4.503 0 0 423.18473393450455 0 423.18473393450455 0 32.034021960761265 0 0 0 2.305462187404089 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.503 + + 71 + NaN NaN 316075.5 NaN 21249 4966 26216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26218 102.75 NaN 201150 35 0 53682 0.261 + 15885 LPLIGVIVI 9 33 468.8280540377894 935.6415551423788 2 468.8280944824219 MULTI HCD FTMS 0 0 0 26216 48728.75390625 0.13130565081938872 7 -0.0835723876953125 2 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.11963627304438548 2 V{I|L}V{I|L} 4 -1 46.186 0 0 4.9363 0 0 493.32530445112695 0 493.32530445112695 0 46.18562527100117 0 0 0 1.4247425010840047 0 0 0 V{I|L}V{I|L} 4.9363 + + 12 NaN NaN 135266.2 NaN 21250 4966 26216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26219 102.76 NaN 53696 35 0 5908.8 0.261 + 7508 FWNSLGGKKD 10 33 576.2936270693756 NaN 0 576.2948608398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FWNSLGGKKD_ ENSG00000006747|ENST00000297029|SCIN;nc|ENSG00000006747|Q9Y6U3-3|SCIN 4.189502756095605 0.3365986553207265 2 G 1 9 6.9897 0 0 0.6075 0 0 704.320669810823 386.20847498111567 1090.5291447919387 0 0 0 0 0 0 0 0 0 + G 0.6075 + + 3 + NaN NaN 118938.1 NaN 21251 4966 26216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26220 102.76 NaN 60725 35 0 8360.6 0.261 + -1 LRFMFALN 8 43 514.2731437242338 NaN 0 514.273193359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _LRFM(Oxidation (M))FALN_ REV__ENSG00000107147|ENST00000371757|KCNT1;REV__ENSG00000162687|ENST00000294725|KCNT2;REV__ENST00000498426.5_1_1:196197356-196286329:-|nuORF;REV__ENST00000610076.1_1_1:196227273-196577439:-|nuORF;REV__nc|ENSG00000107147|Q5JUK3-2|KCNT1;REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1;REV__nc|ENSG00000107147|Q5JUK3|KCNT1;REV__nc|ENSG00000162687|Q6UVM3-2|KCNT2;REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2;REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110952.5 NaN 21252 4966 26216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26222 102.76 NaN 132490 35 0 38184 0.327 + 2463 DREYALFSY 9 32 582.2722991122321 1162.530045291264 2 582.2728881835938 MULTI HCD FTMS 0 0 0 26221 39822.015625 0.7468426660864488 -12 0.13790130615234375 1 Unmodified _DREYALFSY_ ENSG00000130226|ENST00000377770|DPP6;ENST00000496611.1_1_7:154002507-154378881:+|nuORF;nc|ENSG00000130226|P42658-2|DPP6 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111036.6 NaN 21253 4967 26221 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26224 102.77 NaN 116680 35 0 22806 0.327 + 7301 FTPVITIVL 9 40 501.8152052841475 1001.615857635095 2 501.8153076171875 MULTI HCD FTMS 0 0 0 26223 37461.61328125 0.21487091890411444 9 -0.1186981201171875 1 Unmodified _FTPVITIVL_ ENST00000379565.7_1_X:20168583-20168808:-|nuORF 14.838274106304384 0.23215694253501695 2 V{I|L} 2 7 20.969 0 0 2.0935 0 0 771.4529319658802 0 771.4529319658802 0 20.969100130080562 0 0 0 0 0 0 0 + V{I|L} 2.0935 + + 7 NaN NaN 110742.5 NaN 21254 4968 26223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26225 102.78 NaN 126700 35 0 12469 0.261 + 28306 TLTVLMLLA 9 44 487.8019322666822 NaN 0 487.81781005859375 PEAK HCD FTMS 0 0 0 26223 8980.6015625 0.6387641000435931 3 -0.0348052978515625 2 Unmodified _TLTVLMLLA_ REV__ENSG00000140563|ENST00000357742|MCTP2;REV__ENST00000456504.5_1_15:94858078-95022260:+|nuORF;REV__nc|ENSG00000140563|Q6DN12-2|MCTP2;REV__nc|ENSG00000140563|Q6DN12-3|MCTP2;REV__nc|ENSG00000140563|Q6DN12-4|MCTP2 9.347437153973935 0.2499504662953367 2 RV{I|L}M 4 -1 12.563 0 0 1.2904 0 0 159.0905844798918 312.1916597955688 471.2822442754606 0 0 0 0 0 0 0 0 0 RV{I|L}M 1.2904 - 66 + NaN NaN 95263.3 NaN 21255 4968 26223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26226 102.78 NaN 134180 35 0 20286 0.261 + -1 IYLNQRRC 8 40 561.7954823416239 1121.5764117500478 2 561.7959594726562 MULTI HCD FTMS 0 0 0 26223 38933.52734375 0.6665789440948843 1 -0.015777587890625 3 Carbamidomethyl (C) _IYLNQRRC(Carbamidomethyl (C))_ REV__ENST00000521082.5_1_7:23205510-23207476:+|nuORF 14.581692164780916 0.48650662947107914 2 [Y{I|L}]{I|L} 3 -1 36.695 0 0 3.2717 0 0 0 729.3222121159089 729.3222121159089 36.69469995980698 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 [Y{I|L}]{I|L} 3.2717 + + 16 + NaN NaN 112761.8 NaN 21256 4968 26223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26227 102.78 NaN 92380 35 0 7872.6 0.261 + 29646 VAPIIFLTI 9 45 493.8180040217091 NaN 0 493.8179016113281 PEAK HCD FTMS 0 0 0 26223 13989.50390625 0.3750508567869737 -1 0.00710296630859375 4 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 12.531546534597751 0.23452071659215576 2 T 1 -1 11.99 0 0 1.2165 0 0 131.0960509985752 750.4569897034557 881.553040702031 0 0 0 0 0 0.5 0 0 0 T 1.2165 + + 6 + NaN NaN 100739.1 NaN 21257 4968 26223 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26229 102.79 NaN 903290 35 0 386920 0.327 + 476 ALSLQYRYCW 10 47 434.8822201250045 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 26228 73847.609375 0.5599151996711292 -102 1.2587127685546875 1 Unmodified _ALSLQYRYCW_ ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1 0.776531954647913 0.3395196853010637 2 V 1 10 0.3786 0 0 0.04363 0 0 488.4628280620298 277.19599485519797 765.6588229172278 0 0 0 0 0 0 0 0 0 V 0.04363 - 1 + NaN NaN 229644.9 NaN 21258 4969 26228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26230 102.79 NaN 67108 35 0 9103.5 0.261 + 16133 LPTIMFNLL 9 31 531.3066165844787 1060.5986802357572 2 531.306640625 MULTI HCD FTMS 0 0 0 26228 22402.349609375 0.3471024428258574 -9 0.10730743408203125 2 Unmodified _LPTIMFNLL_ REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 9.38312468134398 0.279288223203164 2 {M(Oxidation (M))|F}N{I|L}{I|L} 4 -1 26.198 0 0 2.4701 0 0 555.3094885667349 0 555.3094885667349 0 23.723637474483468 0 0 0 1 0 0 0 {M(Oxidation (M))|F}N{I|L}{I|L} 2.4701 + + 9 NaN NaN 88587.9 NaN 21259 4969 26228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26232 102.8 NaN 606110 35 0 89326 0.327 + 16997 LYIPIFSTF 9 59 550.805018420721 1099.595483908242 2 550.8052368164062 MULTI HCD FTMS 0 0 0 26231 189550.21875 0.7365728406443572 1 -0.00940704345703125 1 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 123.09622228370866 0.0010236603636890153 2 [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 91.252 0 0 8.2987 8.2987 97.77 0 0 0 20.963811584774007 63.804651147624085 20.963811584774007 91.25192609659102 0 2.6861818737241734 1.6989700043360187 0.4247425010840047 0 + + [Y{I|L}]{I|L}P{I|L}{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 8.2987 + + 134 NaN NaN 192528.2 NaN 21260 4970 26231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26233 102.8 NaN 246320 35 0 31012 0.261 + 16797 LYDTIFQIF 9 51 580.305263326062 1158.595973718924 2 580.80712890625 MULTI HCD FTMS 0 0 0 26231 37417.69921875 0.05350728687467914 26 -0.32344818115234375 2 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 27.628801355627647 0.12213550946336599 2 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 44.68 0 0 3.8564 0 0 605.3056576751868 0 605.3056576751868 0 39.195925227640984 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 3.8564 + + 83 NaN NaN 127000.5 NaN 21261 4970 26231 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26235 102.81 NaN 534130 35 0 107430 0.327 + 1249 AYLQLLNLF 9 48 547.8159005750435 1093.617248216887 2 547.8160400390625 MULTI HCD FTMS 0 0 0 26234 324208.25 1 0 0 1 Unmodified _AYLQLLNLF_ ENSG00000144524|ENST00000350033|COPS7B;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B 125.62461146993168 0.0008703235425492373 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 9 3 + 99.747 0 0 9.1208 9.1208 93.504 0 0 0 15.083107092853822 16.478174818886373 15.083107092853822 9.208187539523749 0 2.274227503252014 1.6989700043360187 0 1.3851518780601921 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}Q{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}[AG]{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{M(Oxidation (M))|F}S{I|L}Q{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F} 9.1208;8.2788;7.7416;7.3102;6.8996;6.4682;5.9526;5.9317;4.795 -;-;+;-;-;-;-;-;- + 280 NaN NaN 178726.9 NaN 21262 4971 26234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26236 102.81 NaN 179090 35 0 25312 0.261 + 16798 LYDTIFQIF 9 42 580.305263326062 1158.595973718924 2 580.3056030273438 MULTI HCD FTMS 0 0 0 26234 45743.37890625 0.04056159013474715 27 -0.33039093017578125 2 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 47.748688679222035 0.03472022231463587 2 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 50.165 0 0 4.3298 0 0 605.3065445867369 0 605.3065445867369 0 42.75215163062791 0 0 0 1.9247425010840047 0 0 0.3494850021680094 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4.3298 + + 193 + NaN NaN 109787.2 NaN 21263 4971 26234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26237 102.81 NaN 165700 35 0 23279 0.261 + 33272 YFLAWFHMP 9 56 606.2898068179535 1210.565060702707 2 606.7921142578125 MULTI HCD FTMS 0 0 0 26234 25577.462890625 0.5081637360221282 6 -0.083892822265625 3 Unmodified _YFLAWFHMP_ REV__ENSG00000197181|ENST00000356766|PIWIL2;REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2;REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;REV__PPP3CC-PIWIL2|1|fusion 14.581692164780916 0.23437375358055648 2 [Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L} 8 -1 22.101 0 0 1.8257 0 0 0 161.03548714261424 161.03548714261424 13.121374995494293 0 0 0 0 0.9247425010840047 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L} 1.8257 - 66 NaN NaN 125488.5 NaN 21264 4971 26234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26238 102.82 NaN 89704 35 0 13082 0.261 + 16134 LPTIMFNLL 9 29 531.3066165844787 1060.5986802357572 2 531.8243408203125 MULTI HCD FTMS 0 0 0 26234 14760.341796875 0.349102702033512 -8 0.08965301513671875 4 Unmodified _LPTIMFNLL_ REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}N{I|L}{I|L} 4 -1 29.38 0 0 2.7702 0 0 555.30764289417 0 555.30764289417 0 26.90614065464281 0 0 0 1.3182503180159344 0 0 0 {M(Oxidation (M))|F}N{I|L}{I|L} 2.7702 + + 14 NaN NaN 112019.4 NaN 21265 4971 26234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26240 102.82 NaN 380500 35 0 22558 0.327 + 10815 ISYIFMVLF 9 69 566.8087517937169 1131.6029506542336 2 566.80908203125 MULTI HCD FTMS 0 0 0 26239 66333.8671875 0.6093342791908828 -7 0.08335113525390625 1 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 30.224811164608877 0.11021837014094292 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F} 9 -1 [Y{M(Oxidation (M))|F}] + + 53.224 5.2288 1.6862 4.7034 4.7034 61.862 0 0 0 0 38.62018561222179 0 0 0 2.805462187404089 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{M(Oxidation (M))|F}AV{I|L}{M(Oxidation (M))|F} 4.7034 - 460 + NaN NaN 158009 NaN 21266 4972 26239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26241 102.83 NaN 92231 35 0 10014 0.261 + 2637 DVDEIIITV 9 42 508.77914346867215 1015.5437340041443 2 508.7796325683594 MULTI HCD FTMS 0 0 0 26239 25529.294921875 0.28809070280030974 13 -0.16900634765625 2 Unmodified _DVDEIIITV_ REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-10|TTN;REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN;REV__nc|ENSG00000155657|Q8WZ42-2|TTN;REV__nc|ENSG00000155657|Q8WZ42-3|TTN;REV__nc|ENSG00000155657|Q8WZ42-5|TTN;REV__nc|ENSG00000155657|Q8WZ42-8|TTN;REV__nc|ENSG00000155657|Q8WZ42-9|TTN;REV__nc|ENSG00000155657|Q8WZ42|TTN;REV__TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;REV__TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;REV__TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;REV__TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;REV__TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;REV__TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;REV__TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;REV__TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;REV__TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;REV__TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;REV__TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 19.256988751693697 0.19398022840297344 2 {I|L}{I|L}{[TV]|[{I|L}S]} 4 -1 30.005 0 0 2.9546 0 0 571.2479115216812 0 571.2479115216812 0 28.411290632962714 0 0 0 1.3807196863200843 0 0 0 {I|L}{I|L}{[TV]|[{I|L}S]} 2.9546 + + 14 NaN NaN 103330 NaN 21267 4972 26239 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26243 102.83 NaN 790930 35 0 187160 0.326 + 33257 YFIPEFNLF 9 60 595.3004495064499 1188.5863460796998 2 595.300537109375 MULTI HCD FTMS 0 0 0 26242 171875.6875 0.4087664444224785 4 -0.05826568603515625 1 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 88.95385435242217 0.004553379958619559 2 [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 0 + 75.032 0 0 6.3127 6.3127 87.431 0 0 0 7.147642715192504 51.47583320253139 7.147642715192504 7.257724967479859 0 2.094187677400525 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PE{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEN{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}PEGG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}EY{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}D[QP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}D[QP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 6.3127;5.7021;5.1807;5.1285;4.5701;3.9965;3.7587;3.2743;2.7008 +;-;-;-;-;-;-;-;- + 534 NaN NaN 205171.4 NaN 21268 4973 26242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26244 102.84 NaN 59023 35 0 14077 0.263 + -1 SRPGWSSS 8 32 453.20948167573016 NaN 0 453.20947265625 PEAK HCD FTMS 0 0 0 26242 31348.01953125 0.6161538700732735 -59 0.7835922241210938 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SRPGWSSS_ REV__ENST00000469641.5_1_19:19756247-19760762:-|nuORF;REV__ENST00000473243.5_1_19:19756247-19758388:-|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93336.7 NaN 21269 4973 26242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26245 102.84 NaN 75819 35 0 42241 0.261 + -1 AMVCLIILIIV 11 25 637.3861785900446 NaN 0 637.385498046875 PEAK HCD FTMS 0 0 0 26242 30419.119140625 0.8068189317922401 -28 0.3480987548828125 3 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))VC(Carbamidomethyl (C))LIILIIV_ REV__ENSG00000250361|ENST00000502664|GYPB;REV__ENST00000503255.5_1_4:144918665-144940440:-|nuORF;REV__ENST00000504951.6_1_4:144917454-144923766:-|nuORF;REV__ENST00000505583.5_1_4:144917454-144923733:-|nuORF;REV__ENST00000506516.5_1_4:144917454-144940421:-|nuORF;REV__ENST00000510196.6_1_4:144917454-144940410:-|nuORF;REV__nc|ENSG00000250361|P06028-2|GYPB 0.35063188157827746 0.3411255017974031 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99447.4 NaN 21270 4973 26242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26247 102.84 NaN 83488 35 0 7455.4 0.327 + 13634 KYPENFFLL 9 37 585.8132432729736 1169.6119336127472 2 586.316162109375 MULTI HCD FTMS 0 0 0 26246 21360.169921875 0.6846771500510296 -9 0.105743408203125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.432520586738 0 925.432520586738 0 5 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 14 NaN NaN 102278 NaN 21271 4974 26246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26248 102.85 NaN 65998 35 0 6893.7 0.261 + 2699 DVIDEIISL 9 40 508.77914346867215 1015.5437340041443 2 508.7789001464844 MULTI HCD FTMS 0 0 0 26246 16993.408203125 0.1917656922054653 15 -0.19068145751953125 2 Unmodified _DVIDEIISL_ ENSG00000068323|ENST00000315869|TFE3;ENST00000481606.1_1_X:48895525-48895760:-|nuORF 22.736283301280096 0.1639198954644489 2 {I|L}{I|L}S{I|L} 4 5 43.686 0 0 4.3017 0 0 571.2477284162125 0 571.2477284162125 0 43.68562527100117 0 0 0 1.1747425010840047 0 0 0 + {I|L}{I|L}S{I|L} 4.3017 + + 12 NaN NaN 97347.5 NaN 21272 4974 26246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26249 102.85 NaN 45268 35 0 4513 0.261 + 33932 YLRLKFLI 8 36 533.3450908650422 NaN 0 533.6300048828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YLRLKFLI_ ENSG00000156299|ENST00000541036|TIAM1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93519.7 NaN 21273 4974 26246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26251 102.86 NaN 69901 35 0 12085 0.327 -1 0 39 479.8193063360034 957.6240597388069 2 479.8194580078125 MULTI HCD FTMS 0 0 0 26250 31412.47265625 0.18625309839210183 16 -0.19495391845703125 1 NaN NaN 2 {I|L}P{I|L} 3 -1 26.198 0 0 2.7357 0 0 0 631.3795260065061 631.3795260065061 19.20818753952375 0 0 0 0 0 0 0 0 {I|L}P{I|L} 2.7357 - 4 + NaN NaN 103929.5 NaN 21274 4975 26250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26252 102.86 NaN 105270 35 0 11646 0.261 + 12607 KVHLMFRRLI 10 48 438.2729092362896 1311.7968983090689 3 438.2731628417969 MULTI HCD FTMS 0 0 0 26250 41355.796875 0.22610910473294052 17 -0.20781707763671875 2 Unmodified _KVHLMFRRLI_ REV__ENST00000475441.5_1_1:28905087-28907099:-|nuORF 0.776531954647913 0.4711933975711956 2 P 1 -1 4.6041 0 0 0.35098 0 0 1091.666021699497 120.05022607974843 1211.7162477792454 0 0 0 0 0 0 0 0 0 P 0.35098 - 3 + NaN NaN 107435.6 NaN 21275 4975 26250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26253 102.87 NaN 77188 35 0 14158 0.261 + 8257 GTFIDLLVQL 10 40 559.8262874704734 1117.6380220077467 2 559.826416015625 MULTI HCD FTMS 0 0 0 26250 22177.146484375 0.5600184556989245 1 -0.016265869140625 3 Unmodified _GTFIDLLVQL_ REV__ENST00000593099.5_1_17:33331270-33331522:+|nuORF 11.494710602746466 0.4035943721457025 2 GN{I|L}{I|L} 4 -1 32.423 0 0 2.901 0 0 702.4132557599625 0 702.4132557599625 0 21.453650195120844 0 0 0 0.5 0 0 0 GN{I|L}{I|L} 2.901 - 44 NaN NaN 100905.2 NaN 21276 4975 26250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26254 102.87 NaN 94158 35 0 20798 0.261 + -1 FVQWQQSAC 9 34 577.2612238536265 NaN 0 577.260986328125 PEAK HCD FTMS 0 0 0 26250 12407.5673828125 0.3311204254904383 1 -0.016265869140625 4 Carbamidomethyl (C) _FVQWQQSAC(Carbamidomethyl (C))_ REV__ENSG00000103335|ENST00000301015|PIEZO1 1.6526216038709556 0.28723846860855273 2 Q 1 -1 3.0989 0 0 0.26889 0 0 448.1174661625278 573.2919405572874 1021.4094067198153 0 0 0 0 0 0 0 0 0 Q 0.26889 + + 1 + NaN NaN 103064.5 NaN 21277 4975 26250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26256 102.87 NaN 1308900 35 0 292300 0.327 + 18668 MYIIPVVLF 9 46 555.8168660238879 1109.6191791145757 2 555.817138671875 MULTI HCD FTMS 0 0 0 26255 703022.0625 0.7862422685341292 7 -0.10042572021484375 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 79.93452657146344 0.0058735632865073864 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}PVV{I|L}{M(Oxidation (M))|F} 9 0 [Y{M(Oxidation (M))|F}]{I|L} + + 59.686 5.9421 1.4041 5.3789 5.3789 62.861 0 0 0 0 55.70615965204567 0 0 0 2.305462187404089 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}PVV{I|L}{M(Oxidation (M))|F} 5.3789 + + 73 + NaN NaN 301126 NaN 21278 4976 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26257 102.88 NaN 343280 35 0 51942 0.263 + 12361 KNTAYFYSRF 10 62 432.8851793712902 NaN 0 432.88525390625 PEAK HCD FTMS 0 0 0 26255 152718.234375 0.46348495390172756 -498 8.420074462890625 2 Unmodified _KNTAYFYSRF_ ENSG00000083782|ENST00000261172|EPYC 0.6268255596534771 0.33964781322640114 2 P 1 10 3.9794 0 0 0.46071 0 0 643.6249291998085 120.05024896793202 763.6751781677406 0 0 0 0 0 0 0 0 0 P 0.46071 - 4 + NaN NaN 136940 NaN 21279 4976 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26258 102.88 NaN 207530 35 0 23040 0.261 + 17641 LYYPFSYLF 9 48 606.8024941056096 1211.5904352780192 2 606.8038940429688 MULTI HCD FTMS 0 0 0 26255 43799.96875 0.2952977134426079 -11 0.13492584228515625 3 Unmodified _LYYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 50.855029805455786 0.030374663808198754 2 [Y{I|L}]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F} 9 0 + 63.311 0 0 5.2254 5.2254 86.319 0 0 0 18.226825097560422 16.478174818886373 16.478174818886373 9.018637558036673 0 1.6989700043360187 1.3979400086720375 0 0 + + [Y{I|L}]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.2254;4.4811;3.7211;1.2438;0.48376 +;-;-;-;- + 159 NaN NaN 123269.8 NaN 21280 4976 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26259 102.89 NaN 82735 35 0 11938 0.261 + 20804 PHIETIFLF 9 34 558.8064641399798 1115.5983753467594 2 558.8071899414062 MULTI HCD FTMS 0 0 0 26255 4144.98486328125 0.1108414383575953 4 -0.0617218017578125 4 Unmodified _PHIETIFLF_ REV__tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1 10.823927491677226 0.26684000660059787 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3278 0 0 837.4390806715339 0 837.4390806715339 0 9.771212547196626 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3278 + + 9 NaN NaN 98553.1 NaN 21281 4976 26255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26261 102.89 NaN 106190 35 0 35149 0.327 + 26275 SRDEFIFYS 9 25 582.2722991122321 1162.530045291264 2 582.2728881835938 MULTI HCD FTMS 0 0 0 26260 30440.81640625 0.5709028065475242 -2 0.0325775146484375 1 Unmodified _SRDEFIFYS_ ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1 1.6526216038709556 0.33848895094777925 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96878.1 NaN 21282 4977 26260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26262 102.89 NaN 76027 35 0 5729 0.261 + 13635 KYPENFFLL 9 39 585.8132432729736 1169.6119336127472 2 585.8135986328125 MULTI HCD FTMS 0 0 0 26260 34561.12890625 0.6685532434090525 19 -0.2301483154296875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 29.693 0 0 2.5387 0 0 778.3643665998062 0 778.3643665998062 0 27.703037561203843 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.5387 + + 11 NaN NaN 101989.1 NaN 21283 4977 26260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26263 102.9 NaN 119940 35 0 29103 0.262 + 15886 LPLIGVIVI 9 28 468.8279209381011 935.6412889430022 2 469.3288269042969 MULTI HCD FTMS 0 0 0 26260 68209.9296875 0.6338801341165268 3 -0.04541015625 3 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 28.173230860318316 0.11963627304438548 2 PV{I|L}V{I|L} 5 -1 47.563 0 0 5.0835 0 0 396.2836170880875 0 396.2836170880875 0 47.562893943202624 0 0 0 1.3494850021680094 0 0 0 PV{I|L}V{I|L} 5.0835 - 17 NaN NaN 106608.6 NaN 21284 4977 26260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26264 102.9 NaN 68992 35 0 15325 0.261 + 20966 PLGTEDHH 8 34 453.20948167573016 NaN 0 453.2092590332031 PEAK HCD FTMS 0 0 0 26260 36083.80859375 0.7092370951810416 -55 0.7290420532226562 4 Unmodified _PLGTEDHH_ ENSG00000085274|ENST00000349841|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100104.9 NaN 21285 4977 26260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26265 102.9 NaN 95693 35 0 15130 0.261 + 8671 HFIAQYLQE 9 37 574.7902948511174 NaN 0 574.7909545898438 PEAK HCD FTMS 0 0 0 26260 11829.0625 0.3780430569150024 -1 0.0163116455078125 5 Unmodified _HFIAQYLQE_ REV__ENSG00000090674|ENST00000264079|MCOLN1;REV__ENST00000394321.9_1_19:7587636-7592563:+|nuORF;REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF 2.0597508629832335 0.2852655770354268 2 {I|L} 1 -1 6.9897 0 0 0.60909 0 0 739.2933449739161 292.16636072330317 1031.4597056972193 0 0 0 0 0 0 0 0 0 {I|L} 0.60909 + + 2 + NaN NaN 108859.9 NaN 21286 4977 26260 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26267 102.91 NaN 105670 35 0 16538 0.327 + -1 LILMATLVL 9 41 501.8154502781374 NaN 0 501.8154602050781 PEAK HCD FTMS 0 0 0 26266 86403.875 0.49985424283514274 4 -0.05504608154296875 1 Oxidation (M) _LILM(Oxidation (M))ATLVL_ REV__ENSG00000171054|ENST00000338616|OR13H1 7.289230182591677 0.2599242500475609 2 V 1 -1 6.9897 0 0 0.69784 0 0 131.0971815627426 768.4294178757759 899.5265994385186 0 0 0 0 0 0 0 0 0 V 0.69784 + + 3 + NaN NaN 99586.9 NaN 21287 4978 26266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26268 102.91 NaN 94033 35 0 10431 0.261 + 28307 TLTVLMLLA 9 38 487.8016766261164 NaN 0 487.81817626953125 PEAK HCD FTMS 0 0 0 26266 5248.28369140625 0.4897910425507502 -1 0.01961517333984375 2 Unmodified _TLTVLMLLA_ REV__ENSG00000140563|ENST00000357742|MCTP2;REV__ENST00000456504.5_1_15:94858078-95022260:+|nuORF;REV__nc|ENSG00000140563|Q6DN12-2|MCTP2;REV__nc|ENSG00000140563|Q6DN12-3|MCTP2;REV__nc|ENSG00000140563|Q6DN12-4|MCTP2 5.230669730166228 0.26989974671959066 2 V 1 -1 6.9897 0 0 0.71793 0 0 559.3050611606328 312.19257532291255 871.4976364835454 0 0 0 0 0 0 0 0 0 V 0.71793 + + 15 + NaN NaN 101409 NaN 21288 4978 26266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26270 102.92 NaN 302700 35 0 46124 0.327 + 16998 LYIPIFSTF 9 44 550.805018420721 1099.595483908242 2 550.8052368164062 MULTI HCD FTMS 0 0 0 26269 163221.421875 0.6342618180939439 10 -0.1159210205078125 1 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 70.71552829651908 0.008856681705782516 2 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 71.845 0 0 6.5338 6.5338 94.568 0 0 0 22.376430167995878 59.30909368620867 22.376430167995878 71.84501246997776 0 1.774227503252014 1.5228787452803376 0 0 + + [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 6.5338 + + 76 NaN NaN 134374.3 NaN 21289 4979 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26271 102.92 NaN 78868 35 0 13079 0.261 + 10385 IMPTIFNLI 9 30 531.3066165844787 1060.5986802357572 2 531.306640625 MULTI HCD FTMS 0 0 0 26269 57231.796875 0.8867505796942159 1 -0.016143798828125 2 Unmodified _IMPTIFNLI_ ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1 17.11289562659939 0.2125047172822487 2 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 5 26.198 0 0 2.4701 0 0 555.308882370881 0 555.308882370881 0 26.197887582883936 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 2.4701 + + 4 NaN NaN 96375.2 NaN 21290 4979 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26272 102.93 NaN 77517 35 0 9650.8 0.261 + 17103 LYLETHLSF 9 31 561.7954823416239 1121.5764117500478 2 561.79638671875 MULTI HCD FTMS 0 0 0 26269 20078.564453125 0.34376408214791937 12 -0.13311004638671875 3 Unmodified _LYLETHLSF_ ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6 16.942295170755138 0.21397866736869717 2 [Y{I|L}]{I|L} 3 6 36.695 0 0 3.2717 0 0 0 729.3229678222987 729.3229678222987 35.5854562117252 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + [Y{I|L}]{I|L} 3.2717 + + 11 + NaN NaN 110919.9 NaN 21291 4979 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26273 102.93 NaN 84887 35 0 8735.1 0.261 + 29647 VAPIIFLTI 9 32 493.81783999058393 NaN 0 493.8182373046875 PEAK HCD FTMS 0 0 0 26269 20335.93359375 0.62941103147624 5 -0.06243133544921875 4 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 12.531546534597751 0.23452071659215576 2 T 1 -1 11.99 0 0 1.2165 0 0 131.09703144425538 750.4545672512456 881.5515986955011 0 0 0 0 0 0.5 0 0 0 T 1.2165 + + 3 + NaN NaN 106718.7 NaN 21292 4979 26269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26275 102.94 NaN 394920 35 0 91514 0.327 + 1250 AYLQLLNLF 9 54 547.8159005750435 1093.617248216887 2 547.8160400390625 MULTI HCD FTMS 0 0 0 26274 132516.984375 0.4087403216142711 9 -0.0997772216796875 1 Unmodified _AYLQLLNLF_ ENSG00000144524|ENST00000350033|COPS7B;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B 100.37149154755038 0.004254194004462789 2 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}N{I|L}{M(Oxidation (M))|F} 9 3 + 97.872 0 0 8.9494 8.9494 93.325 0 0 0 17.513487579716767 16.478174818886373 16.478174818886373 9.208187539523749 0 2.3494850021680094 1.6989700043360187 0 1.055462187404089 {[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[QV]|[N{I|L}]|[RA]|[KV]}{M(Oxidation (M))|F}T{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}Q{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{I|L}N{I|L}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[AG]{I|L}{I|L}GG{I|L}{M(Oxidation (M))|F} 8.9494;8.1074;7.3479;6.506;5.889;4.7028 -;-;+;-;-;- + 240 NaN NaN 159365 NaN 21293 4980 26274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26276 102.94 NaN 149750 35 0 20213 0.261 + 16799 LYDTIFQIF 9 49 580.305263326062 1158.595973718924 2 580.3058471679688 MULTI HCD FTMS 0 0 0 26274 33375.75 0.029594960501591164 36 -0.3734588623046875 2 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 22.736283301280096 0.1639198954644489 2 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 43.488 0 0 3.7535 0 0 605.3051040006162 0 605.3051040006162 0 33.61071721255756 0 0 0 1.305462187404089 0 0 0 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 3.7535 + + 132 NaN NaN 119125.7 NaN 21294 4980 26274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26277 102.94 NaN 89513 35 0 8231.8 0.262 + 33789 YLGLLVLAI 9 39 487.8178473965853 973.6211418599706 2 488.3197021484375 MULTI HCD FTMS 0 0 0 26274 20873.806640625 0.31769940731166585 18 -0.20108795166015625 3 Unmodified _YLGLLVLAI_ REV__tr|U7SMP9|U7SMP9_FUSNUHeptaprenyldiphosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01776PE=4SV=1 28.173230860318316 0.11963627304438548 2 {I|L}{I|L}M[{I|L}A]{I|L} 6 -1 35.992 0 0 3.6967 0 0 301.200487205275 0 301.200487205275 0 35.99153133413289 0 0 0 1.6861818737241734 0 0 0 {I|L}{I|L}M[{I|L}A]{I|L} 3.6967 - 43 NaN NaN 104728.4 NaN 21295 4980 26274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26278 102.95 NaN 109580 35 0 18678 0.261 + 32968 YALVQYALPL 10 40 575.8286309852092 1149.6427090372183 2 575.8284301757812 MULTI HCD FTMS 0 0 0 26274 17019.130859375 0.5377580909225051 1 -0.01959991455078125 4 Unmodified _YALVQYALPL_ ENSG00000133704|ENST00000256079|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant;IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant 3.944395688203298 0.4544253912184634 2 [Y{I|L}]AV 4 7 21.198 0 0 1.8439 0 0 0 700.3675818908695 700.3675818908695 18.433677739595034 0 0 0 0 0.5 0 0 0 [Y{I|L}]AV 1.8439 - 30 NaN NaN 121505.2 NaN 21296 4980 26274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26279 102.95 NaN 31480 35 0 3258.4 0.261 -1 MSYQKQRER 9 28 634.3135375976562 NaN 0 634.3135375976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MSYQKQRER_ ENST00000311635.11_3_16:87364652-87364682:-|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100525.4 NaN 21297 4980 26274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26281 102.96 NaN 229440 35 0 14507 0.327 + 10816 ISYIFMVLF 9 58 566.8087517937169 1131.6029506542336 2 566.8089599609375 MULTI HCD FTMS 0 0 0 26280 56370.609375 0.5178130883576634 2 -0.01910400390625 1 Unmodified _ISYIFMVLF_ REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000183873|ENST00000423572|SCN5A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant 23.1484247019978 0.1603590852062899 2 V{I|L}{M(Oxidation (M))|F} 3 -1 31.682 0 0 2.7998 0 0 754.3690052716812 0 754.3690052716812 0 2.870156338638594 0 0 0 0.6989700043360187 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.7998 + + 182 NaN NaN 129246.6 NaN 21298 4981 26280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26282 102.96 NaN 108780 35 0 18647 0.261 + 3892 EPPGKNPHTAT 11 43 574.7902948511174 NaN 0 574.7906494140625 PEAK HCD FTMS 0 0 0 26280 15612.314453125 0.49895138193560556 3 -0.0266876220703125 2 Unmodified _EPPGKNPHTAT_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 2.498486711656943 0.3350326561941647 2 {I|L} 1 11 6.9897 0 0 0.60909 0 0 739.2927651399317 292.16672693424067 1031.4594920741724 0 0 0 0 0 0 0 0 0 {I|L} 0.60909 - 3 + NaN NaN 110828.2 NaN 21299 4981 26280 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26284 102.96 NaN 282000 35 0 46632 0.326 + 33258 YFIPEFNLF 9 51 595.3004495064499 1188.5863460796998 2 595.3002319335938 MULTI HCD FTMS 0 0 0 26283 131416.78125 0.312544323111488 13 -0.146026611328125 1 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 47.748688679222035 0.03472022231463587 2 [Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F} 9 0 + 46.594 0 0 3.9201 3.9201 82.815 0 0 0 7.147642715192504 39.60438606382367 7.147642715192504 4.648167490521175 0 1.5501648626366045 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}D[QP]{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}D[QP]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.9201;3.5291;3.462;3.1454;2.7688;2.7543;2.7018;2.6873 +;-;-;-;-;-;-;- + 178 NaN NaN 137576.9 NaN 21300 4982 26283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26285 102.97 NaN 100150 35 0 15184 0.261 + 32225 VYTLDIPVLF 10 44 590.3365536001152 1178.6585542670302 2 590.3368530273438 MULTI HCD FTMS 0 0 0 26283 38388.65625 0.22358835209663735 -9 0.13292694091796875 2 Unmodified _VYTLDIPVLF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 20.453626601364224 0.3197956946484955 2 {I|L}{M(Oxidation (M))|F} 2 8 25.969 0 0 2.2033 0 0 900.4967764686628 0 900.4967764686628 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2033 + + 5 NaN NaN 120922.3 NaN 21301 4982 26283 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26287 102.97 NaN 113690 35 0 14611 0.411 + 16800 LYDTIFQIF 9 57 580.305263326062 1158.595973718924 2 580.2864990234375 MULTI HCD FTMS 0 0 0 26286 33015.44921875 0.029275474425928857 39 -0.385528564453125 1 Unmodified _LYDTIFQIF_ ENSG00000137757|ENST00000260315|CASP5;ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-5|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4 36.12702656103203 0.08312389501731911 2 {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4 5 48.488 0 0 4.185 0 0 605.3047684160415 0 605.3047684160415 0 41.49797211252192 0 0 0 1.805462187404089 0 0 0 + {M(Oxidation (M))|F}Q{I|L}{M(Oxidation (M))|F} 4.185 + + 290 NaN NaN 128793.6 NaN 21302 4983 26286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26289 102.98 NaN 41952 35 0 5348 0.327 -1 0 28 479.8193063360034 957.6240597388069 2 479.8194580078125 MULTI HCD FTMS 0 0 0 26288 5192.9814453125 0.030790600111822365 25 -0.2662506103515625 1 NaN NaN 2 V{I|L} 2 -1 17.959 0 0 1.8753 0 0 727.4631214826187 0 727.4631214826187 0 17.95880017344075 0 0 0 0 0 0 0 V{I|L} 1.8753 - 2 NaN NaN 114183.5 NaN 21303 4984 26288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26290 102.99 NaN 97768 35 0 13192 0.261 + -1 IYLNQRRC 8 46 561.7954823416239 1121.5764117500478 2 561.7948608398438 MULTI HCD FTMS 0 0 0 26288 10824.234375 0.18532116693714645 17 -0.18935394287109375 2 Carbamidomethyl (C) _IYLNQRRC(Carbamidomethyl (C))_ REV__ENST00000521082.5_1_7:23205510-23207476:+|nuORF 9.347437153973935 0.5250182646323369 2 [Y{I|L}]{I|L} 3 -1 30.686 0 0 2.736 0 0 0 729.3236178033811 729.3236178033811 30.686362358410122 0 0 0 0 0.5 1.5228787452803376 0 0 [Y{I|L}]{I|L} 2.736 + + 4 + NaN NaN 108284.5 NaN 21304 4984 26288 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26292 102.99 NaN 1027000 35 0 204380 0.412 + 18669 MYIIPVVLF 9 66 555.8168660238879 1109.6191791145757 2 555.817138671875 MULTI HCD FTMS 0 0 0 26291 488462.375 0.5462840873696884 16 -0.179931640625 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 67.41302359171755 0.009925318700911543 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}PVV{I|L}{M(Oxidation (M))|F} 9 0 + 64.319 0 0 5.7965 5.7965 93.163 0 0 0 4.762036441594191 40.13805019828801 4.762036441594191 64.31926257837823 0 1.9247425010840047 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}PVV{I|L}{M(Oxidation (M))|F} 5.7965 + + 58 NaN NaN 416289 NaN 21305 4985 26291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26294 103 NaN 72161 35 0 13384 0.411 + 5356 FFYVMISEL 9 46 574.7902948511174 NaN 0 574.7884521484375 PEAK HCD FTMS 0 0 0 26293 14715.638671875 0.4702946685734606 8 -0.1023406982421875 1 Unmodified _FFYVMISEL_ REV__ENSG00000173409|ENST00000310256|ARV1 2.0597508629832335 0.2852655770354268 2 {I|L} 1 -1 6.9897 0 0 0.60909 0 0 739.292582034463 292.16587244205317 1031.4584544765162 0 0 0 0 0 0 0 0 0 {I|L} 0.60909 + + 7 + NaN NaN 116608.1 NaN 21306 4986 26293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26296 103.01 NaN 249190 35 0 47215 0.327 + 32468 WEDYRLTWK 9 57 432.8851793712902 NaN 0 432.88519287109375 PEAK HCD FTMS 0 0 0 26295 139327.90625 0.4228466133712494 -487 8.037620544433594 1 Unmodified _WEDYRLTWK_ ENSG00000160716|ENST00000368476|CHRNB2 0.2068570091315345 0.29424444207237255 2 K 1 8 0.71334 0 0 0.082586 0 0 413.74171997129287 318.8852938287719 732.6270138000648 0 0 0 0 0 0 0 0 0 + K 0.082586 + + 1 + NaN NaN 131322.5 NaN 21307 4987 26295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26297 103.01 NaN 161060 35 0 25692 0.261 + 17642 LYYPFSYLF 9 36 606.8024941056096 1211.5904352780192 2 606.8031616210938 MULTI HCD FTMS 0 0 0 26295 148324.78125 1 0 0 2 Unmodified _LYYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 50.855029805455786 0.030374663808198754 2 [Y{I|L}]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F} 9 0 + 73.364 0 0 6.0552 6.0552 93.751 0 0 0 24.13734275855269 62.906075122407685 24.13734275855269 73.36365002801443 0 1.75 1.6989700043360187 0 0 + + [Y{I|L}]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F} 6.0552 + + 70 NaN NaN 116321.2 NaN 21308 4987 26295 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26299 103.02 NaN 119830 35 0 27355 0.327 + 15887 LPLIGVIVI 9 31 468.8279209381011 935.6412889430022 2 468.8280334472656 MULTI HCD FTMS 0 0 0 26298 47825.44140625 0.34362437177820043 14 -0.1597137451171875 1 Unmodified _LPLIGVIVI_ REV__nc|ENSG00000142163|Q8WZA6|OR1E3 20.871210003555333 0.18003371494288972 2 V{I|L}V{I|L} 4 -1 41.186 0 0 4.4019 0 0 493.3244412457817 0 493.3244412457817 0 41.18562527100117 0 0 0 0.9247425010840047 0 0 0 V{I|L}V{I|L} 4.4019 + + 11 NaN NaN 121805.3 NaN 21309 4988 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26300 103.02 NaN 87452 35 0 7252 0.261 + 13636 KYPENFFLL 9 34 585.8132432729736 1169.6119336127472 2 585.8153686523438 MULTI HCD FTMS 0 0 0 26298 23508.01171875 0.45474085997885905 30 -0.306854248046875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 4.897010918128616 0.31389406404703984 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 23.188 0 0 1.9825 0 0 778.36528212715 0 778.36528212715 0 19.20818753952375 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 1.9825 + + 12 NaN NaN 116556.3 NaN 21310 4988 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26301 103.03 NaN 59481 35 0 8077.1 0.262 + 12196 KKQKQLKS 8 30 494.3194885253906 NaN 0 494.3194885253906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KKQKQLKS_ ENSG00000228486|ENST00000627399|C2orf92;ENST00000451384.6_2_2:98292117-98319261:+|nuORF 4.75600775471527 0.38822285293237185 2 T 1 8 6.9897 0 0 0.70995 0 0 130.01645659453033 750.4574952694309 880.4739518639612 0 0 0 0 0 0 0 0 0 T 0.70995 - 2 + NaN NaN 94529.4 NaN 21311 4988 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26302 103.03 NaN 38334 35 0 5957.4 0.261 + -1 YISINMGMKF 10 24 618.2950899699566 1234.5756270067131 2 618.2943725585938 MULTI HCD FTMS 0 0 0 26298 5694.89453125 0.313264995869025 -2 0.02034759521484375 4 2 Oxidation (M) _YISINM(Oxidation (M))GM(Oxidation (M))KF_ REV__ENSG00000162594|ENST00000347310|IL23R;REV__nc|ENSG00000162594|Q5VWK5-3|IL23R;REV__nc|ENSG00000162594|Q5VWK5-4|IL23R 1.4819007175156935 0.4674597685733628 2 Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 -1 10.458 0 0 0.84706 0 0 794.3628407209 0 794.3628407209 0 6.962724883926656 0 0 0 0 0 0 0 Y{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 0.84706 - 2 NaN NaN 111122.8 NaN 21312 4988 26298 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26304 103.04 NaN 77999 35 0 21278 0.327 + -1 SSPNDEVLRM 10 25 582.2722991122321 1162.530045291264 2 582.2728271484375 MULTI HCD FTMS 0 0 0 26303 19203.6171875 0.3601545635930138 10 -0.108856201171875 1 Oxidation (M) _SSPNDEVLRM(Oxidation (M))_ REV__ENSG00000196367|ENST00000456197|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP;REV__nc|ENSG00000196367|Q9Y4A5|TRRAP 1.1933415558491238 0.46898715808974617 2 T 1 -1 3.9794 0 0 0.34231 0 0 533.7015063281766 524.7480562799436 1058.4495626081202 0 0 0 0 0 0 0 0 0 T 0.34231 - 1 + NaN NaN 102952.8 NaN 21313 4989 26303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26305 103.04 NaN 97195 35 0 9447.6 0.261 + 10168 IFSPVFNFF 9 45 559.2893588472411 1116.5641647612822 2 559.8262329101562 MULTI HCD FTMS 0 0 0 26303 11063.4453125 0.06431962779195323 -16 0.20345306396484375 2 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 20.41453444215458 0.18397929046831515 2 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 34.909 0 0 3.1265 0 0 543.3050918057833 0 543.3050918057833 0 27.919562702124452 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3.1265 + + 15 NaN NaN 97649.5 NaN 21314 4989 26303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26307 103.04 NaN 113340 35 0 12882 0.411 + 16999 LYIPIFSTF 9 52 550.805018420721 1099.595483908242 2 550.805419921875 MULTI HCD FTMS 0 0 0 26306 28147.84375 0.1093796534009593 21 -0.2183990478515625 1 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 60.38955033654506 0.017036522530421875 2 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 9 0 + 67.637 0 0 6.1511 6.1511 93.793 0 0 0 20.157942671832316 54.14197490877392 20.157942671832316 67.63682493045401 0 1.274227503252014 1.3010299956639813 0 0 + + [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F}ST{M(Oxidation (M))|F} 6.1511 + + 35 NaN NaN 114712.7 NaN 21315 4990 26306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26309 103.05 NaN 95472 35 0 8680.8 0.327 + 13637 KYPENFFLL 9 38 585.8132432729736 1169.6119336127472 2 585.8079833984375 MULTI HCD FTMS 0 0 0 26308 30754.259765625 0.5949128620979426 33 -0.32216644287109375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.188 0 0 2.41 0 0 778.3663807599625 0 778.3663807599625 0 22.703037561203843 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.41 + + 15 NaN NaN 119034.2 NaN 21316 4991 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26310 103.06 NaN 49737 35 0 5584.1 0.261 + 16135 LPTIMFNLL 9 25 531.3066165844787 1060.5986802357572 2 531.30615234375 MULTI HCD FTMS 0 0 0 26308 25435.95703125 0.3941052155290748 12 -0.13581085205078125 2 Unmodified _LPTIMFNLL_ REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 13.90604991867851 0.24021115267848145 2 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 4 -1 24.693 0 0 2.3282 0 0 555.308397361525 0 555.308397361525 0 24.69273760456403 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 2.3282 + + 4 NaN NaN 111878.9 NaN 21317 4991 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26311 103.06 NaN 95260 35 0 15676 0.261 + 6541 FPLAPLLAL 9 38 477.8048865403542 953.5952201475084 2 477.80450439453125 MULTI HCD FTMS 0 0 0 26308 48789.546875 1 0 0 3 Unmodified _FPLAPLLAL_ ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;ENSG00000171714|ENST00000324559|ANO5;ENSG00000177119|ENST00000320560|ANO6;ENSG00000185101|ENST00000332826|ANO9;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENST00000534161.5_1_11:418373-429524:-|nuORF;nc|ENSG00000134343|Q9BYT9-2|ANO3;nc|ENSG00000151572|Q32M45-2|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000177119|Q4KMQ2-2|ANO6;nc|ENSG00000177119|Q4KMQ2-3|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000185101|A1A5B4-2|ANO9 14.581692164780916 0.23437375358055648 2 A{I|L} 2 7 25.969 0 0 2.7233 0 0 751.4613701685621 0 751.4613701685621 0 23.037275116073346 0 0 0 0.5 0 0 0 + A{I|L} 2.7233 + + 7 NaN NaN 115658.1 NaN 21318 4991 26308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26313 103.07 NaN 84666 35 0 7156.2 0.327 + 10169 IFSPVFNFF 9 42 559.2893588472411 1116.5641647612822 2 559.2893676757812 MULTI HCD FTMS 0 0 0 26312 26842.0546875 0.13327032202098357 -13 0.14597320556640625 1 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 47.748688679222035 0.03472022231463587 2 {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4 5 47.211 0 0 4.2283 0 0 543.304979392775 0 543.304979392775 0 45.95224976539658 0 0 0 1.7302046884880937 0 0 0.4247425010840047 + {M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 4.2283 + + 46 NaN NaN 115498.9 NaN 21319 4992 26312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26314 103.07 NaN 99269 35 0 8960.6 0.261 + 13638 KYPENFFLL 9 34 585.8132432729736 1169.6119336127472 2 585.8128051757812 MULTI HCD FTMS 0 0 0 26312 38423.48828125 0.7432670322546666 34 -0.32364654541015625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 27.619 0 0 2.3614 0 0 778.3646107404312 0 778.3646107404312 0 23.640078085766092 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.3614 + + 6 NaN NaN 120657.2 NaN 21320 4992 26312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26315 103.07 NaN 66008 35 0 10977 0.261 + 14 AAGLYLLLGGF 11 29 547.8159005750435 1093.617248216887 2 547.8159790039062 MULTI HCD FTMS 0 0 0 26312 51573.76171875 0.1590760312815914 21 -0.217437744140625 3 Unmodified _AAGLYLLLGGF_ ENSG00000219200|ENST00000593646|RNASEK;ENST00000552176.2_17:6916945-6917602:+|nuORF;nc|ENSG00000219200|Q6P5S7-2|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK 10.823927491677226 0.3627731766506869 2 {I|L} 1 10 15.242 0 0 1.3937 0 0 392.20612333589105 585.3023775690061 977.5085009048971 0 0 0 0 0 0.8252574989159953 0 0 0 + {I|L} 1.3937 + + 8 + NaN NaN 102482.5 NaN 21321 4992 26312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26316 103.08 NaN 44541 35 0 6928.4 0.261 + 16988 LYIIGVALL 9 38 487.8180512052449 NaN 0 487.8179626464844 PEAK HCD FTMS 0 0 0 26312 15465.2890625 0.2841190288819955 18 -0.19040679931640625 4 Unmodified _LYIIGVALL_ REV__tr|U7SRV5|U7SRV5_FUSNUPolaraminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01443PE=3SV=1 9.347437153973935 0.2499504662953367 2 V 1 -1 9.6041 0 0 0.98643 0 0 559.3368337563899 312.1922701471313 871.5291039035212 0 0 0 0 0 0.5 0 0 0 V 0.98643 + + 3 + NaN NaN 96734 NaN 21322 4992 26312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26317 103.08 NaN 34065 35 0 6093.4 0.261 -1 CLMLWFCLF 9 30 624.7872202503746 NaN 0 624.7884521484375 PEAK HCD FTMS 0 0 0 26312 10727.5751953125 0.5354765549801687 4 -0.05490875244140625 5 Carbamidomethyl (C),Oxidation (M) _CLM(Oxidation (M))LWFC(Carbamidomethyl (C))LF_ ENST00000481559.6_1_5:152869375-153085697:+|nuORF 0.6014990680409731 0.29233206172879045 2 Y 1 -1 5.4846 0 0 0.43962 0 0 642.2016855185242 439.2722262018188 1081.473911720343 0 0 0 0 0 0 0 0 0 Y 0.43962 - 3 + NaN NaN 102785.5 NaN 21323 4992 26312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26318 103.08 NaN 28603 35 0 4136.4 0.261 -1 0 20 632.5794677734375 NaN 0 632.5794677734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100701.7 NaN 21324 4992 26312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26320 103.09 NaN 181170 35 0 8973.1 0.327 + 29478 TYVFLMVLF 9 56 566.8087517937169 1131.6029506542336 2 566.8091430664062 MULTI HCD FTMS 0 0 0 26319 25685.677734375 0.23594529599133657 14 -0.1392974853515625 1 Unmodified _TYVFLMVLF_ ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1 16.942295170755138 0.21397866736869717 2 {[{M(Oxidation (M))|F}C]|[YS]}[RH][NP]V{I|L}{M(Oxidation (M))|F} 9 5 {[{M(Oxidation (M))|F}C]|[YS]}[RH][NP]V + + 28.711 -15.775 -1.8484 2.5372 2.5372 59.916 0 0 0 0 5.295000083553205 0 0 0 0.9247425010840047 0 0 0 {[{M(Oxidation (M))|F}C]|[YS]}[RH][NP]V{I|L}{M(Oxidation (M))|F} 2.5372 - 72 + NaN NaN 126014.4 NaN 21325 4993 26319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26321 103.09 NaN 76332 35 0 7185.3 0.261 + 486 ALVLYIRK 8 47 488.31941769002697 NaN 0 488.3189697265625 PEAK HCD FTMS 0 0 0 26319 22415.3203125 1 0 0 2 Unmodified _ALVLYIRK_ ENSG00000088543|ENST00000357203|C3orf18 6.354104778181461 0.38822285293237185 2 V 1 7 6.9897 0 0 0.71717 0 0 316.2188823488686 556.3121051937361 872.5309875426046 0 0 0 0 0 0 0 0 0 + V 0.71717 + + 6 + NaN NaN 98952.7 NaN 21326 4993 26319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26322 103.1 NaN 39660 35 0 4153 0.261 + 12691 KWNKFINL 8 37 531.8087768554688 NaN 0 531.8087768554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KWNKFINL_ ENST00000415861.2_1_6:109689555-109689642:-|nuORF 2.302733041254933 0.38822285293237185 2 {M(Oxidation (M))|F} 1 7 6.9897 0 0 0.65968 0 0 554.2733062970718 355.19761072330317 909.470917020375 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.65968 + + 1 + NaN NaN 115312.6 NaN 21327 4993 26319 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26324 103.1 NaN 147820 35 0 30722 0.327 + 32226 VYTLDIPVLF 10 36 590.3365536001152 1178.6585542670302 2 590.3369140625 MULTI HCD FTMS 0 0 0 26323 67601.2109375 0.39373202476324765 3 -0.0261688232421875 1 Unmodified _VYTLDIPVLF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 14.838274106304384 0.3723198072575719 2 {I|L}{M(Oxidation (M))|F} 2 8 25.969 0 0 2.2033 0 0 900.4950984552994 0 900.4950984552994 0 20.48455006504028 0 0 0 0.5 0 0 0 + {I|L}{M(Oxidation (M))|F} 2.2033 + + 9 NaN NaN 120521 NaN 21328 4994 26323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26325 103.11 NaN 178730 35 0 29059 0.261 + 33259 YFIPEFNLF 9 44 595.3004495064499 1188.5863460796998 2 595.2999877929688 MULTI HCD FTMS 0 0 0 26323 36159.67578125 0.08599739914099934 25 -0.2323455810546875 2 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 32.78568957990786 0.09846250359632436 2 [Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 2 + 40.441 0 0 3.4024 3.4024 80.926 0 0 0 4.762036441594191 30.198493605822634 4.762036441594191 1.249387366082992 0 1.110924374808178 0 0 0 [Y{M(Oxidation (M))|F}]{I|L}[EP]N{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}N{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]N{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]{M(Oxidation (M))|F}GG{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}[EP]GG{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][VP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}][VP]{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}{M(Oxidation (M))|F}{I|L}{M(Oxidation (M))|F} 3.4024;3.2973;3.1492;2.6277;2.5226;2.3744;1.2523;0.99905 -;+;-;-;-;-;-;- + 81 NaN NaN 119461.1 NaN 21329 4994 26323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26327 103.11 NaN 661030 35 0 150180 0.327 + 18670 MYIIPVVLF 9 39 555.8168660238879 1109.6191791145757 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26326 217401.984375 0.24313693480824622 26 -0.239593505859375 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 42.708 0 0 3.8489 0 0 423.1799834132069 0 423.1799834132069 0 42.70812200728862 0 0 0 1.8807196863200843 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 3.8489 + + 39 + NaN NaN 207089.6 NaN 21330 4995 26326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26328 103.12 NaN 81392 35 0 11664 0.261 + -1 MGPLSAISIHQ 11 38 585.3053427693759 NaN 0 585.3048095703125 PEAK HCD FTMS 0 0 0 26326 15785.251953125 0.36976648852527566 1 -0.00946044921875 2 Oxidation (M) _M(Oxidation (M))GPLSAISIHQ_ REV__ENSG00000171097|ENST00000302586|KYAT1;REV__nc|ENSG00000286112|Q16773-2|KYAT1 2.735195868890462 0.3343611804837492 2 V 1 -1 10.485 0 0 0.89719 0 0 772.381790419808 294.1239412897094 1066.5057317095175 0 0 0 0 0 0.5 0 0 0 V 0.89719 - 4 + NaN NaN 103151.3 NaN 21331 4995 26326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26331 103.13 NaN 33650 35 0 6043.6 0.327 -1 RYYNKQCVL 9 25 622.317138671875 NaN 0 622.317138671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _RYYNKQC(Carbamidomethyl (C))VL_ KCNF1|p.R417C|1|0.19|ENSG00000162975|chr2:10913675-10913675|C/T|missense_variant 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106830.2 NaN 21332 4997 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26332 103.13 NaN 32735 35 0 3666.6 0.261 + -1 AMRMMIMVPH 10 31 624.7872202503746 NaN 0 624.7880859375 PEAK HCD FTMS 0 0 0 26330 3998.176025390625 0.19957254881009565 8 -0.07989501953125 2 2 Oxidation (M) _AM(Oxidation (M))RM(Oxidation (M))MIMVPH_ REV__ENST00000492267.1_1_3:82855892-82856129:-|nuORF 3.944395688203298 0.33680843299986807 2 {I|L} 1 -1 8.0989 0 0 0.64918 0 0 652.2550912802429 479.19941126041255 1131.4545025406555 0 0 0 0 0 0.5 0 0 0 {I|L} 0.64918 + + 1 + NaN NaN 99870.3 NaN 21333 4997 26330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26334 103.14 NaN 83554 35 0 9319.6 0.411 + 17643 LYYPFSYLF 9 45 606.8024941056096 1211.5904352780192 2 606.802978515625 MULTI HCD FTMS 0 0 0 26333 28610.6953125 0.19289221309739837 11 -0.1114501953125 1 Unmodified _LYYPFSYLF_ ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 50.855029805455786 0.030374663808198754 2 [Y{I|L}]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F} 9 0 + 69.587 0 0 5.7435 5.7435 89.051 0 0 0 22.376430167995878 59.12971259689115 22.376430167995878 9.771212547196626 0 1.8494850021680094 1.5228787452803376 0 0 + + [Y{I|L}]Y{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}SY{I|L}{M(Oxidation (M))|F};[Y{I|L}]{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]};[Y{M(Oxidation (M))|F}]{I|L}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[HN]{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 5.7435;4.937;3.2863;2.1345;0.48376 +;-;-;-;- + 119 NaN NaN 125951.7 NaN 21334 4998 26333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26336 103.14 NaN 68301 35 0 10506 0.411 -1 SRYFLDMFVY 10 48 452.8804975211712 NaN 0 452.8704528808594 PEAK HCD FTMS 0 0 0 26335 19913.6484375 0.9088380634572202 14 -0.13863372802734375 1 Oxidation (M) _SRYFLDM(Oxidation (M))FVY_ ENST00000551200.5_1_12:102471044-102512308:-|nuORF 0.6268255596534771 0.33964781322640114 2 R 1 -1 3.4949 0 0 0.38671 0 0 469.4227859585549 275.2006014459594 744.6233874045143 0 0 0 0 0 0 0 0 0 R 0.38671 + + 1 + NaN NaN 111111.8 NaN 21335 4999 26335 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26338 103.15 NaN 68464 35 0 42213 0.327 -1 KKLERLCLTL 10 20 637.3861785900446 NaN 0 637.38623046875 PEAK HCD FTMS 0 0 0 26337 18914.23046875 0.5016699909001892 -1 0.007568359375 1 Carbamidomethyl (C) _KKLERLC(Carbamidomethyl (C))LTL_ ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|1|fusion;RNF213-CSNK1D|2|fusion 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108153.7 NaN 21336 5000 26337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26339 103.16 NaN 76533 35 0 9833.8 0.261 -1 RRLKMVVKTF 10 29 647.3937293309426 NaN 0 647.394775390625 PEAK HCD FTMS 0 0 0 26337 25311.451171875 0.6178550045897659 22 -0.20803070068359375 2 Oxidation (M) _RRLKM(Oxidation (M))VVKTF_ ENSG00000083642|ENST00000315596|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000083642|Q9NTI5-3|PDS5B;nc|ENSG00000083642|Q9NTI5-4|PDS5B 3.2813086475875832 0.33737594360511275 2 M 1 -1 3.9794 0 0 0.30782 0 0 682.4082949882539 476.30170618228755 1158.7100011705415 0 0 0 0 0 0 0 0 0 M 0.30782 + + 4 + NaN NaN 115776 NaN 21337 5000 26337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26340 103.16 NaN 150690 35 0 15260 0.261 + 33260 YFIPEFNLF 9 50 595.3004495064499 1188.5863460796998 2 595.8013916015625 MULTI HCD FTMS 0 0 0 26337 19834.228515625 0.06740169204239999 35 -0.33814239501953125 3 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 13.90604991867851 0.24021115267848145 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 30.194 0 0 2.5404 0 0 763.3517933576187 0 763.3517933576187 0 19.50802387251995 0 0 0 0.6382104921644451 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.5404 - 40 NaN NaN 107690.2 NaN 21338 5000 26337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26341 103.16 NaN 97135 35 0 9460.1 0.261 + 13639 KYPENFFLL 9 40 585.8134150245181 1169.6122771158362 2 585.8150634765625 MULTI HCD FTMS 0 0 0 26337 19625.984375 0.34208085435310437 -33 0.38741302490234375 4 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 13.90604991867851 0.24021115267848145 2 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4315663068375 0 925.4315663068375 0 17.897131498072127 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 15 NaN NaN 106757.5 NaN 21339 5000 26337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26342 103.17 NaN 70654 35 0 6735.7 0.261 + 17000 LYIPIFSTF 9 41 550.805018420721 1099.595483908242 2 550.8063354492188 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LYIPIFSTF_ ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 23.1484247019978 0.1603590852062899 2 [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F} 6 3 21.655 0 0 1.9694 0 0 0 350.135750673317 350.135750673317 21.655462488490684 0 0 0 0 1.3494850021680094 0 0 0 + [Y{I|L}]{I|L}[{I|L}P]{M(Oxidation (M))|F} 1.9694 + + 17 NaN NaN 104825.3 NaN 21340 5000 26337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26344 103.17 NaN 56640 35 0 6932.5 0.411 + 8672 HFIAQYLQE 9 51 574.7899169921875 NaN 0 574.7899169921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _HFIAQYLQE_ REV__ENSG00000090674|ENST00000264079|MCOLN1;REV__ENST00000394321.9_1_19:7587636-7592563:+|nuORF;REV__ENST00000596008.1_1_19:7591330-7591862:+|nuORF 3.944395688203298 0.27613285122220627 2 H 1 -1 6.9897 0 0 0.60909 0 0 715.315962254103 292.1654451959594 1007.4814074500625 0 0 0 0 0 0 0 0 0 H 0.60909 + + 9 + NaN NaN 107134.9 NaN 21341 5001 26343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26346 103.18 NaN 128490 35 0 16559 0.327 + 13826 KYPSPFFVF 9 52 566.2973870038811 1130.5802210745621 2 566.2980346679688 MULTI HCD FTMS 0 0 0 26345 27997.29296875 0.6727938315511678 -18 0.19707489013671875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 10.799506525563784 0.2670509983294061 2 {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3 6 21.682 0 0 1.9178 0 0 719.3695545880875 0 719.3695545880875 0 11.760912590556812 0 0 0 0 0 0 0 + {M(Oxidation (M))|F}V{M(Oxidation (M))|F} 1.9178 + + 20 NaN NaN 101273.2 NaN 21342 5002 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26347 103.18 NaN 40884 35 0 7453.2 0.261 -1 MCYLYIVKM 9 29 618.79638671875 NaN 0 618.79638671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))C(Carbamidomethyl (C))YLYIVKM_ ENSG00000147251|ENST00000276202|DOCK11 0.6014990680409731 0.29233206172879045 2 D 1 -1 4.6041 0 0 0.37323 0 0 670.2103818341812 445.31305872135005 1115.5234405555314 0 0 0 0 0 0 0 0 0 D 0.37323 - 1 + NaN NaN 94806.5 NaN 21343 5002 26345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26349 103.19 NaN 322660 35 0 28021 0.327 + 10170 IFSPVFNFF 9 50 559.2893588472411 1116.5641647612822 2 559.2896728515625 MULTI HCD FTMS 0 0 0 26348 109492.0234375 0.5436259404180422 -2 0.0171356201171875 1 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 78.7280429016045 0.006263961847259105 2 {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F} 9 0 + 76.903 0 0 6.8875 6.8875 88.738 0 0 0 5.6424927368725974 65.57827834592722 5.6424927368725974 8.010299956639813 0 2.9247425010840047 0 0.7059771852360797 0.7742275032520141 + + {[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]{M(Oxidation (M))|F}N{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}S[VP]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}{I|L}[VP]{M(Oxidation (M))|F}GG{M(Oxidation (M))|F}{M(Oxidation (M))|F};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}S{[QN]|[E{I|L}]|[KN]} 6.8875;6.17;5.3694;4.652;0.30114 +;-;-;-;- + 196 NaN NaN 153070.1 NaN 21344 5003 26348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26350 103.19 NaN 72912 35 0 7360.1 0.261 + 30756 VPLVALLVL 9 44 468.8279209381011 935.6412889430022 2 468.82830810546875 MULTI HCD FTMS 0 0 0 26348 25885.591796875 0.18598720592562457 27 -0.24806976318359375 2 Unmodified _VPLVALLVL_ REV__ENSG00000204655|ENST00000376917|MOG;REV__nc|ENSG00000204655|Q16653-11|MOG;REV__nc|ENSG00000204655|Q16653-12|MOG;REV__nc|ENSG00000204655|Q16653-13|MOG;REV__nc|ENSG00000204655|Q16653-2|MOG;REV__nc|ENSG00000204655|Q16653-3|MOG;REV__nc|ENSG00000204655|Q16653-4|MOG;REV__nc|ENSG00000204655|Q16653-5|MOG;REV__nc|ENSG00000204655|Q16653-6|MOG;REV__nc|ENSG00000204655|Q16653-7|MOG;REV__nc|ENSG00000204655|Q16653-8|MOG;REV__nc|ENSG00000204655|Q16653-9|MOG 5.230669730166228 0.3113646817964458 2 V{I|L} 2 -1 25.217 0 0 2.6951 0 0 705.4753285138687 0 705.4753285138687 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 V{I|L} 2.6951 + + 2 NaN NaN 101818.6 NaN 21345 5003 26348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26352 103.2 NaN 52163 35 0 7070.9 0.327 + 20939 PLAVRRKF 8 28 493.81796435804904 NaN 0 493.81756591796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PLAVRRKF_ REV__ENSG00000108018|ENST00000263054|SORCS1 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97072 NaN 21346 5004 26351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26353 103.2 NaN 29322 35 0 4465 0.261 + 30378 VLKMLCEWGK 10 26 603.822021484375 NaN 0 603.822021484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VLKMLCEWGK_ tr|U7SVZ1|U7SVZ1_FUSNUHTHhxlR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01394PE=4SV=1 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101464.3 NaN 21347 5004 26351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26355 103.21 NaN 53427 35 0 4673.4 0.411 + 16685 LWTCIKMGF 9 49 549.7767965123711 NaN 0 549.7772827148438 PEAK HCD FTMS 0 0 0 26354 5199.07861328125 0.36064435551983637 1 -0.00757598876953125 1 Unmodified _LWTCIKMGF_ ENST00000471642.6_1_1:155708069-155708207:+|nuORF 10.823927491677226 0.2427956001690155 2 R 1 9 8.2268 0 0 0.74957 0 0 358.2225860893921 580.1925753229124 938.4151614123045 0 0 0 0 0 0.4247425010840047 0 0 0 R 0.74957 - 3 + NaN NaN 101770.8 NaN 21348 5005 26354 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26357 103.21 NaN 168710 35 0 19689 0.327 + 15098 LMERQKRKA 9 66 580.3405375128857 1158.6665220925713 2 580.3405151367188 MULTI HCD FTMS 0 0 0 26356 25512.09375 0.28348771488821217 -19 0.20845794677734375 1 Unmodified _LMERQKRKA_ ENST00000486331.1_1_22:41716661-41728273:+|nuORF 6.723162845929126 0.3000504726104499 2 EPE 3 8 33.94 0 0 2.9292 0 0 785.4999159893475 0 785.4999159893475 0 18.142725218139468 0 0 0 0.7742275032520141 0 0 0 EPE 2.9292 - 145 NaN NaN 121600.9 NaN 21349 5006 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26358 103.22 NaN 48488 35 0 7662.9 0.261 + 15444 LPDLEELFL 9 27 544.7973174892951 1087.58008204539 2 544.7974853515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LPDLEELFL_ ENSG00000154114|ENST00000683345|TBCEL;ENST00000533134.1_1_11:120924418-120928239:+|nuORF 7.289230182591677 0.29575926068275815 2 {M(Oxidation (M))|F}{I|L} 2 7 25.969 0 0 2.3878 0 0 809.4169251103831 0 809.4169251103831 0 25.969100130080562 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L} 2.3878 + + 4 NaN NaN 98814.1 NaN 21350 5006 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26359 103.22 NaN 58574 35 0 8614.4 0.261 + 23815 RRREVCLE 8 32 530.7882850601567 1059.5620171871133 2 530.7884521484375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RRREVCLE_ ENST00000529307.1_1_11:34074563-34074728:+|nuORF 2.0597508629832335 0.5389364538378849 2 {I|L} 1 7 6.9897 0 0 0.65968 0 0 149.10457980494317 794.3533419244749 943.4579217294181 0 0 0 0 0 0 0 0 0 + {I|L} 0.65968 + + 5 + NaN NaN 102677.7 NaN 21351 5006 26356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26361 103.23 NaN 181140 35 0 27999 0.411 + 32227 VYTLDIPVLF 10 50 590.3365536001152 1178.6585542670302 2 590.3359375 MULTI HCD FTMS 0 0 0 26360 10752.7685546875 0.06262771444674152 16 -0.13967132568359375 1 Unmodified _VYTLDIPVLF_ ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF 26.88365393820708 0.25965138844209146 2 {I|L}[{I|L}T]{I|L}{M(Oxidation (M))|F} 5 6 24.274 0 0 2.0595 0 0 573.28325087715 0 573.28325087715 0 15.779594246013495 0 0 0 0.5 0 0.7302046884880937 0 {I|L}[{I|L}T]{I|L}{M(Oxidation (M))|F} 2.0595 - 28 NaN NaN 158375.9 NaN 21352 5007 26360 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26363 103.24 NaN 429390 35 0 94439 0.327 + 18671 MYIIPVVLF 9 51 555.8168660238879 1109.6191791145757 2 555.8170776367188 MULTI HCD FTMS 0 0 0 26362 141392.5 0.15812983103031972 39 -0.3649139404296875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 56.04830969593885 0.023109620888794903 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 46.203 0 0 4.1639 0 0 423.1830351710194 0 423.1830351710194 0 45.718421963928435 0 0 0 2.2302046884880937 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 4.1639 + + 35 + NaN NaN 169220.7 NaN 21353 5008 26362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26364 103.24 NaN 152870 35 0 20366 0.261 + 33261 YFIPEFNLF 9 40 595.3006267618093 1188.5867005904186 2 595.3009643554688 MULTI HCD FTMS 0 0 0 26362 29667.744140625 0.4580028692483872 3 -0.0280303955078125 2 Unmodified _YFIPEFNLF_ ENSG00000164430|ENST00000370315|CGAS 10.073929032068715 0.27331982688540024 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 3 6 31.44 0 0 2.6452 0 0 763.353319236525 0 763.353319236525 0 23.764100213633768 0 0 0 0.6747425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F} 2.6452 - 14 NaN NaN 119780.6 NaN 21354 5008 26362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26365 103.24 NaN 50179 35 0 6912 0.261 -1 MLRRLVFL 8 35 545.334708496998 NaN 0 545.3352661132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MLRRLVFL_ ENST00000353383.5_2_17:17714598-17714688:+|nuORF 0.7936320650641473 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.64205 0 0 132.17098678709095 806.3952120416624 938.5661988287534 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.64205 + + 3 + NaN NaN 96322.1 NaN 21355 5008 26362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26367 103.25 NaN 45190 35 0 2625.9 0.411 + -1 LQCDRVYFI 9 41 607.3055252878928 NaN 0 607.3058471679688 PEAK HCD FTMS 0 0 0 26366 25861.560546875 1 0 0 1 Carbamidomethyl (C) _LQC(Carbamidomethyl (C))DRVYFI_ REV__ENST00000451726.1_1_19:36205079-36205238:+|nuORF 4.3292370932331545 0.2742679634796037 2 Y 1 -1 6.9897 0 0 0.57642 0 0 277.1580590617436 769.3559811988295 1046.514040260573 0 0 0 0 0 0 0 0 0 Y 0.57642 + + 10 + NaN NaN 120645.5 NaN 21356 5009 26366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26369 103.26 NaN 28309 35 0 6475.1 0.412 + 9556 HRHEEFRLGC 10 29 642.3076025574926 NaN 0 642.3073120117188 PEAK HCD FTMS 0 0 0 26368 17270.451171875 1 0 0 1 Unmodified _HRHEEFRLGC_ REV__ENSG00000143365|ENST00000318247|RORC;REV__nc|ENSG00000143365|P51449-2|RORC 1.3295316138638542 0.339046394236575 2 E 1 -1 3.0989 0 0 0.24161 0 0 723.3421205429164 427.1931246393188 1150.5352451822353 0 0 0 0 0 0 0 0 0 E 0.24161 + + 2 + NaN NaN 99168.9 NaN 21357 5010 26368 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26372 103.27 NaN 55156 35 0 6244.2 0.327 + 13640 KYPENFFLL 9 29 585.8134150245181 1169.6122771158362 2 585.8134155273438 MULTI HCD FTMS 0 0 0 26371 17477.822265625 0.3046383946209939 -21 0.21784210205078125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4312514986354 0 925.4312514986354 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 4 NaN NaN 100935.4 NaN 21358 5012 26371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26373 103.27 NaN 119780 35 0 44365 0.261 -1 MPDVIDFLVL 10 33 589.3118992586501 1176.6092455841 2 589.3124389648438 MULTI HCD FTMS 0 0 0 26371 18216.1015625 0.1518307874645332 -21 0.21784210205078125 2 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 3.2813086475875832 0.45793521633868084 2 {I|L}V{I|L} 3 -1 24.693 0 0 2.0986 0 0 833.3658314435562 0 833.3658314435562 0 10 0 0 0 0 0 0 0 {I|L}V{I|L} 2.0986 + + 6 NaN NaN 126642.2 NaN 21359 5012 26371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26374 103.28 NaN 30768 35 0 13383 0.261 + -1 WMRKDIMKC 9 18 642.3076025574926 NaN 0 642.307373046875 PEAK HCD FTMS 0 0 0 26371 5160.37744140625 0.29879806787039503 2 -0.01961517333984375 3 Carbamidomethyl (C),Oxidation (M) _WM(Oxidation (M))RKDIMKC(Carbamidomethyl (C))_ REV__ENSG00000144028|ENST00000323853|SNRNP200 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95026.2 NaN 21360 5012 26371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26378 103.3 NaN 116460 35 0 15066 0.327 + -1 VDTYNDSMYIW 11 41 474.8678386065824 NaN 0 474.8675537109375 PEAK HCD FTMS 0 0 0 26377 16533.15625 0.25931493120307886 -10 0.08928680419921875 1 Oxidation (M) _VDTYNDSM(Oxidation (M))YIW_ REV__ENSG00000135636|ENST00000410020|DYSF;REV__nc|ENSG00000135636|O75923-10|DYSF;REV__nc|ENSG00000135636|O75923-11|DYSF;REV__nc|ENSG00000135636|O75923-12|DYSF;REV__nc|ENSG00000135636|O75923-14|DYSF;REV__nc|ENSG00000135636|O75923-15|DYSF;REV__nc|ENSG00000135636|O75923-2|DYSF;REV__nc|ENSG00000135636|O75923-3|DYSF;REV__nc|ENSG00000135636|O75923-4|DYSF;REV__nc|ENSG00000135636|O75923-5|DYSF;REV__nc|ENSG00000135636|O75923-6|DYSF;REV__nc|ENSG00000135636|O75923-7|DYSF;REV__nc|ENSG00000135636|O75923-8|DYSF;REV__nc|ENSG00000135636|O75923-9|DYSF;REV__nc|ENSG00000135636|O75923|DYSF 2.4347853303010236 0.3352133586680373 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.57871 0 0 491.47360948679915 306.1835116022094 797.6571210890086 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.57871 + + 1 + NaN NaN 118394.9 NaN 21361 5015 26377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26379 103.3 NaN 106480 35 0 8696.3 0.261 + 13827 KYPSPFFVF 9 47 566.2973870038811 1130.5802210745621 2 566.2974853515625 MULTI HCD FTMS 0 0 0 26377 19834.28515625 0.4766312486441678 -5 0.0407562255859375 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 2 W[NP]V{M(Oxidation (M))|F} 5 6 26.95 0 0 2.3838 0 0 469.25471694160314 0 469.25471694160314 0 8.99166239860314 0 0 0 0.7742275032520141 0 0 0 W[NP]V{M(Oxidation (M))|F} 2.3838 - 27 NaN NaN 114660 NaN 21362 5015 26377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26380 103.3 NaN 26599 35 0 3671.3 0.261 -1 LMDEILKQQQ 10 18 644.3339233398438 NaN 0 644.3339233398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LMDEILKQQQ_ ENSG00000153989|ENST00000368494|NUS1;ENST00000401550.2_1_13:99262776-99262983:-|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94987.6 NaN 21363 5015 26377 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26382 103.31 NaN 47840 35 0 3586.8 0.411 + 34509 YPFPDGILDVI 11 46 624.8284301757812 NaN 0 624.8284301757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YPFPDGILDVI_ ENSG00000123600|ENST00000375258|METTL8;ENST00000428182.2_1_12:15408356-15408710:-|nuORF;ENST00000438609.5_1_2:172180771-172195744:-|nuORF;nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8 4.897010918128616 0.3282287337590871 2 V 1 10 6.9897 0 0 0.56023 0 0 131.09272003605594 1014.4557086153441 1145.5484286514 0 0 0 0 0 0 0 0 0 + V 0.56023 + + 4 + NaN NaN 106642 NaN 21364 5016 26381 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26384 103.32 NaN 117330 35 0 26747 0.327 + 10523 IPFADALDLF 10 40 561.2973222461716 1120.580091559143 2 561.2972412109375 MULTI HCD FTMS 0 0 0 26383 60756.2890625 0.1743781157668318 -16 0.14548492431640625 1 Unmodified _IPFADALDLF_ ENSG00000146143|ENST00000615550|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENST00000490313.1_1_6:57244770-57299810:+|nuORF 24.020572477871973 0.2864316864133941 2 {I|L}D{I|L}{M(Oxidation (M))|F} 4 6 43.047 0 0 3.8415 0 0 614.3011952130875 0 614.3011952130875 0 36.05774396488272 0 0 0 1.3494850021680094 0 0 0 + {I|L}D{I|L}{M(Oxidation (M))|F} 3.8415 + + 22 NaN NaN 109161.4 NaN 21365 5017 26383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26385 103.32 NaN 75320 35 0 8643.4 0.261 + 13641 KYPENFFLL 9 41 585.8134150245181 1169.6122771158362 2 585.8151245117188 MULTI HCD FTMS 0 0 0 26383 31729.28515625 0.5530413540983609 -16 0.14548492431640625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 25.969 0 0 2.2203 0 0 925.4333363263687 0 925.4333363263687 0 19.13425655227236 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.2203 + + 12 NaN NaN 106183.9 NaN 21366 5017 26383 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26387 103.33 NaN 81586 35 0 9463.2 0.411 -1 RRLKMVVKTF 10 38 647.3937293309426 NaN 0 647.3939819335938 PEAK HCD FTMS 0 0 0 26386 17803.025390625 0.4345735951583333 40 -0.36598968505859375 1 Oxidation (M) _RRLKM(Oxidation (M))VVKTF_ ENSG00000083642|ENST00000315596|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000083642|Q9NTI5-3|PDS5B;nc|ENSG00000083642|Q9NTI5-4|PDS5B 3.2813086475875832 0.33737594360511275 2 M 1 -1 4.6041 0 0 0.35614 0 0 736.4412539726289 422.2692049615844 1158.7104589342134 0 0 0 0 0 0 0 0 0 M 0.35614 + + 5 + NaN NaN 129164.1 NaN 21367 5018 26386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26389 103.33 NaN 63046 35 0 4468.2 0.411 + 29648 VAPIIFLTI 9 43 493.81790260007546 NaN 0 493.8175964355469 PEAK HCD FTMS 0 0 0 26388 4719.85791015625 0.21965510336455168 1 -0.0074920654296875 1 Unmodified _VAPIIFLTI_ REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant 12.531546534597751 0.23452071659215576 2 T 1 -1 11.99 0 0 1.2165 0 0 131.09892668276967 750.4565523736936 881.5554790564634 0 0 0 0 0 0.5 0 0 0 T 1.2165 + + 3 + NaN NaN 129461.3 NaN 21368 5019 26388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26391 103.34 NaN 84017 35 0 20820 0.327 + 15445 LPDLEELFL 9 27 544.7973174892951 1087.58008204539 2 544.79736328125 MULTI HCD FTMS 0 0 0 26390 30924.875 0.5854219813058791 -4 0.03202056884765625 1 Unmodified _LPDLEELFL_ ENSG00000154114|ENST00000683345|TBCEL;ENST00000533134.1_1_11:120924418-120928239:+|nuORF 14.838274106304384 0.23215694253501695 2 E{I|L}{M(Oxidation (M))|F}{I|L} 4 5 40.433 0 0 3.7177 0 0 567.2892933576187 0 567.2892933576187 0 40.43305028184122 0 0 0 1 0 0 0 + E{I|L}{M(Oxidation (M))|F}{I|L} 3.7177 + + 10 NaN NaN 101234.1 NaN 21369 5020 26390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26392 103.35 NaN 63582 35 0 10896 0.261 + 14816 LISYAFIFS 9 28 530.7882850601567 1059.5620171871133 2 530.7877197265625 MULTI HCD FTMS 0 0 0 26390 15326.201171875 0.4373087091532043 -3 0.02435302734375 2 Unmodified _LISYAFIFS_ ENSG00000279116|ENST00000624618|OR8D2 4.75600775471527 0.31496297302216103 2 {M(Oxidation (M))|F}V 2 8 7.0783 0 0 0.66804 0 0 468.298236524807 342.10923181705317 810.4074683418602 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}V 0.66804 - 6 + NaN NaN 103459.2 NaN 21370 5020 26390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26394 103.35 NaN 76708 35 0 14490 0.327 -1 SSLVLLLCLTC 11 29 639.843426721051 1277.6723005089018 2 639.8442993164062 MULTI HCD FTMS 0 0 0 26393 17069.251953125 0.06725660737949021 -18 0.1620941162109375 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 2.9952420565917617 0.40578455234410343 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111945.5 NaN 21371 5021 26393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26395 103.35 NaN 99698 35 0 13855 0.261 + 31330 VWTPIPVLTW 10 44 606.3458168994333 NaN 0 606.3455810546875 PEAK HCD FTMS 0 0 0 26393 14359.943359375 0.2813500179433898 -10 0.08707427978515625 2 Unmodified _VWTPIPVLTW_ ENSG00000186501|ENST00000374076|TMEM222 5.731851221503515 0.33527861879838866 2 A{I|L} 2 9 8.4999 0 0 0.70208 0 0 721.4198920002353 302.11594568424067 1023.5358376844761 0 0 0 0 0 0.3807196863200844 0 0 0 A{I|L} 0.70208 - 12 + NaN NaN 129904 NaN 21372 5021 26393 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26397 103.36 NaN 138500 35 0 21968 0.411 + 26679 SYALLWNLL 9 65 546.8077005577284 1091.6008481822566 2 547.3098754882812 MULTI HCD FTMS 0 0 0 26396 23897.912109375 0.5527890346941928 -3 0.0262451171875 1 Unmodified _SYALLWNLL_ ENSG00000050555|ENST00000361069|LAMC3 24.020572477871973 0.15282392193088168 2 {[QV]|[N{I|L}]|[RA]|[KV]}W 3 7 23.301 0 0 2.1345 0 0 0 675.3715140360254 675.3715140360254 1.9010562085580318 0 0 0 0 0 1.5228787452803376 0 0 {[QV]|[N{I|L}]|[RA]|[KV]}W 2.1345 - 52 NaN NaN 130730.2 NaN 21373 5022 26396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26399 103.37 NaN 56603 35 0 5103.7 0.411 + 26680 SYALLWNLL 9 48 546.8077005577284 1091.6008481822566 2 547.3097534179688 MULTI HCD FTMS 0 0 0 26398 7133.6806640625 0.16501108674496962 -2 0.01682281494140625 1 Unmodified _SYALLWNLL_ ENSG00000050555|ENST00000361069|LAMC3 15.847184025352803 0.2234401846867398 2 N{I|L}{I|L} 3 6 10.686 0 0 0.97896 0 0 733.380140200428 0 733.380140200428 0 3.212112250009655 0 0 0 0.5 0 0 0 + N{I|L}{I|L} 0.97896 + + 27 + NaN NaN 107422.8 NaN 21374 5023 26398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26401 103.37 NaN 79708 35 0 8397.9 0.411 + 12302 KLQASTFTT 9 56 498.7714647621503 NaN 0 498.77105712890625 PEAK HCD FTMS 0 0 0 26400 27978.115234375 0.9358305067472222 -1 0.00743865966796875 1 Unmodified _KLQASTFTT_ REV__ENSG00000109132|ENST00000226382|PHOX2B;REV__ENSG00000165462|ENST00000298231|PHOX2A 4.3292370932331545 0.2742679634796037 2 Q 1 -1 4.6041 0 0 0.46248 0 0 629.3619470030131 235.07795129947502 864.4398983024881 0 0 0 0 0 0 0 0 0 Q 0.46248 + + 4 + NaN NaN 112594.4 NaN 21375 5024 26400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26404 103.39 NaN 160160 35 0 10354 0.327 + 15099 LMERQKRKA 9 57 580.3405375128857 1158.6665220925713 2 580.3412475585938 MULTI HCD FTMS 0 0 0 26403 38754.3046875 0.4306337764982893 1 -0.0122833251953125 1 Unmodified _LMERQKRKA_ ENST00000486331.1_1_22:41716661-41728273:+|nuORF 10.823927491677226 0.26684000660059787 2 EPE 3 8 35.005 0 0 3.0212 0 0 785.5019271654634 0 785.5019271654634 0 8.322646798160562 0 0 0 0.8807196863200843 0 0 0 EPE 3.0212 - 47 NaN NaN 126450.2 NaN 21376 5026 26403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26405 103.39 NaN 51490 35 0 6029.2 0.261 + 23834 RRSLMGPFP 9 32 530.7883911132812 NaN 0 530.7883911132812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RRSLMGPFP_ ENST00000595531.5_1_2:105883140-105883392:-|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99001.8 NaN 21377 5026 26403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26406 103.4 NaN 36682 35 0 7037.8 0.261 + -1 FTFICIALCV 10 26 622.31644172523 NaN 0 622.316650390625 PEAK HCD FTMS 0 0 0 26403 8488.271484375 0.43183369157221824 -1 0.00696563720703125 3 2 Carbamidomethyl (C) _FTFIC(Carbamidomethyl (C))IALC(Carbamidomethyl (C))V_ REV__ENSG00000117114|ENST00000686636|ADGRL2;REV__nc|ENSG00000117114|O95490-2|ADGRL2;REV__nc|ENSG00000117114|O95490-3|ADGRL2;REV__nc|ENSG00000117114|O95490-4|ADGRL2;REV__nc|ENSG00000117114|O95490-5|ADGRL2;REV__nc|ENSG00000117114|O95490-6|ADGRL2;REV__nc|ENSG00000117114|O95490-7|ADGRL2;REV__nc|ENSG00000117114|O95490|ADGRL2 10.823927491677226 0.33092050725491123 2 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.4293484389381 274.0832918756469 1126.512640314585 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 2 + NaN NaN 98063.4 NaN 21378 5026 26403 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26408 103.4 NaN 337840 35 0 66068 0.327 + 18672 MYIIPVVLF 9 50 555.8168660238879 1109.6191791145757 2 555.817138671875 MULTI HCD FTMS 0 0 0 26407 89483.8984375 0.10007655101830835 58 -0.5721817016601562 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 2 {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 6 3 42.268 0 0 3.8092 0 0 423.18052870918126 0 423.18052870918126 0 35.27819381628923 0 0 0 1.774227503252014 0 0 0 + {I|L}[VP]V{I|L}{M(Oxidation (M))|F} 3.8092 + + 24 NaN NaN 132878.4 NaN 21379 5027 26407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26409 103.41 NaN 111470 35 0 19904 0.261 -1 MLRKYLKWIIL 11 51 506.9785250990774 1517.9137458974321 3 507.3133239746094 MULTI HCD FTMS 0 0 0 26407 72199.671875 0.7480659401235314 1 -0.01280975341796875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MLRKYLKWIIL_ tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1 0.09484139111097674 0.41850472438158626 2 QNK 3 -1 7.14 0 0 0.47038 0 0 883.5432147468447 261.1336763971313 1144.676891143976 0 0 0 0 0 0.5 0 0 0 QNK 0.47038 - 14 + NaN NaN 102570.3 NaN 21380 5027 26407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26410 103.41 NaN 167740 35 0 62461 0.261 -1 MPDVIDFLVL 10 41 589.3118992586501 1176.6092455841 2 589.3115844726562 MULTI HCD FTMS 0 0 0 26407 34208.1640625 0.2851242605068408 -6 0.0508880615234375 3 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 10.073929032068715 0.4168838835836452 2 V{I|L} 2 -1 25.969 0 0 2.2071 0 0 946.4468061982848 0 946.4468061982848 0 11.276362525516532 0 0 0 0.5 0 0 0 V{I|L} 2.2071 + + 9 NaN NaN 115085.7 NaN 21381 5027 26407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26412 103.41 NaN 232860 35 0 29879 0.327 + 6693 FPNLEVEFF 9 55 571.281900573209 1140.5492482132179 2 571.2821655273438 MULTI HCD FTMS 0 0 0 26411 28793.583984375 0.3956087295901708 3 -0.03813934326171875 1 Unmodified _FPNLEVEFF_ tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1 10.073929032068715 0.27331982688540024 2 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 4 6 43.22 0 0 3.7894 0 0 600.2902973197141 0 600.2902973197141 0 36.22994718840225 0 0 0 1.7302046884880937 0 0 0 {M(Oxidation (M))|F}D{I|L}{M(Oxidation (M))|F} 3.7894 - 41 NaN NaN 134722 NaN 21382 5028 26411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26413 103.42 NaN 65811 35 0 5415.1 0.261 + -1 LMPNGQLNRL 10 39 586.3144456107356 NaN 0 586.3153076171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _LM(Oxidation (M))PNGQLNRL_ REV__ENSG00000187033|ENST00000335556|SAMD7 3.5964929083625545 0.337106189561315 2 {I|L} 1 -1 6.9897 0 0 0.5971 0 0 132.09709697368027 922.4100011334307 1054.507098107111 0 0 0 0 0 0 0 0 0 {I|L} 0.5971 + + 3 + NaN NaN 97238.5 NaN 21383 5028 26411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26414 103.42 NaN 69278 35 0 12682 0.264 -1 YPCSLYYPFF 10 35 452.87020052721107 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 26411 9847.361328125 0.3189115467084996 79 -0.778594970703125 3 Carbamidomethyl (C) _YPC(Carbamidomethyl (C))SLYYPFF_ ENSG00000120057|ENST00000266066|SFRP5 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98203.7 NaN 21384 5028 26411 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26416 103.43 NaN 180180 35 0 33335 0.411 + 11827 KELVHELRKP 10 47 624.8746924272762 NaN 0 624.8729248046875 PEAK HCD FTMS 0 0 0 26415 29219.0625 0.55594079561412 -4 0.04732513427734375 1 Unmodified _KELVHELRKP_ REV__ENSG00000174791|ENST00000311320|RIN1;REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF 1.4819007175156935 0.33891598740166873 2 VDT 3 -1 16.198 0 0 1.2982 0 0 131.18506398892356 798.3866816815448 929.5717456704683 0 0 0 0 0 0 0 0 0 VDT 1.2982 - 11 + NaN NaN 157848.5 NaN 21385 5029 26415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26418 103.44 NaN 183460 35 0 46500 0.327 + 10524 IPFADALDLF 10 35 561.2973222461716 1120.580091559143 2 561.2974853515625 MULTI HCD FTMS 0 0 0 26417 151104.75 0.4336894500141802 -3 0.03508758544921875 1 Unmodified _IPFADALDLF_ ENSG00000146143|ENST00000615550|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENST00000490313.1_1_6:57244770-57299810:+|nuORF 36.12702656103203 0.1790159924230938 2 A{I|L}D{I|L}{M(Oxidation (M))|F} 5 5 51.013 0 0 4.5524 0 0 543.2733021466812 0 543.2733021466812 0 45.52887198244136 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + A{I|L}D{I|L}{M(Oxidation (M))|F} 4.5524 + + 44 NaN NaN 125125 NaN 21386 5030 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26419 103.44 NaN 154950 35 0 26349 0.261 + 20957 PLFADAGLPDQ 11 41 572.2880984087004 1142.5616438842007 2 572.2883911132812 MULTI HCD FTMS 0 0 0 26417 24981.658203125 0.15722369257822483 -3 0.03508758544921875 2 Unmodified _PLFADAGLPDQ_ REV__ENSG00000187994|ENST00000591812|RINL;REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF;REV__nc|ENSG00000187994|Q6ZS11-2|RINL 5.783430956126388 0.39355650299313505 2 {I|L}P{M(Oxidation (M))|F}ANG 6 -1 39.87 0 0 3.4895 0 0 0 540.2453707330686 540.2453707330686 32.880325230808154 0 0 0 0 0.3494850021680094 0 0 0 {I|L}P{M(Oxidation (M))|F}ANG 3.4895 - 57 + NaN NaN 105748.8 NaN 21387 5030 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26420 103.44 NaN 58481 35 0 6332.2 0.261 + 21465 PYAHNKHL 8 41 490.25811767578125 NaN 0 490.25811767578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PYAHNKHL_ REV__ENSG00000102935|ENST00000563137|ZNF423;REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423;REV__nc|ENSG00000102935|Q2M1K9|ZNF423 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93381.4 NaN 21388 5030 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26421 103.45 NaN 223680 35 0 45954 0.261 + 478 ALSTRLVRSFV 11 45 624.8746924272762 NaN 0 624.8736572265625 PEAK HCD FTMS 0 0 0 26417 30279.939453125 0.5761257271932558 -3 0.03508758544921875 4 Unmodified _ALSTRLVRSFV_ REV__ENSG00000101158|ENST00000652272|NELFCD;REV__ENST00000474543.5_1_20:57564608-57568882:+|nuORF;REV__ENST00000477741.5_1_20:57562773-57565044:+|nuORF;REV__nc|ENSG00000101158|Q8IXH7|NELFCD 2.735195868890462 0.3343611804837492 2 VDT 3 -1 16.198 0 0 1.2982 0 0 131.18739866203697 798.3880022160116 929.5754008780486 0 0 0 0 0 0 0 0 0 VDT 1.2982 - 13 + NaN NaN 136126.8 NaN 21389 5030 26417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26423 103.45 NaN 442570 35 0 208160 0.327 + -1 GCCCCCCCA 9 44 577.1262827743475 NaN 0 576.793212890625 PEAK HCD FTMS 0 0 0 26422 18814.8984375 0.522880033001509 13 -0.1220855712890625 1 5 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CCA_ REV__ENST00000238892.3_1_2:46844356-46844401:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 154043 NaN 21390 5031 26422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26424 103.46 NaN 76236 35 0 8474.5 0.261 -1 SSSPGCCSCC 10 44 552.6627197265625 NaN 0 552.6627197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 3 Carbamidomethyl (C) _SSSPGC(Carbamidomethyl (C))C(Carbamidomethyl (C))SC(Carbamidomethyl (C))C_ ENST00000564295.1_1_16:56692857-56693073:+|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103314.8 NaN 21391 5031 26422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26427 103.47 NaN 433600 35 0 108960 0.327 -1 SSLVLLLCLTC 11 38 639.843426721051 1277.6723005089018 2 640.3450317382812 MULTI HCD FTMS 0 0 0 26426 118173.5 0.4224998081096279 -4 0.03908538818359375 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 2 M 1 -1 9.6041 0 0 0.75169 0 0 701.3125633337361 442.2957525655162 1143.6083158992524 0 0 0 0 0 0.5 0 0 0 M 0.75169 - 2 + NaN NaN 163495.2 NaN 21392 5033 26426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26428 103.47 NaN 62933 35 0 5458.1 0.261 + -1 VDNINRWPSF 10 33 645.3200950375847 1288.6256371419693 2 645.3202514648438 MULTI HCD FTMS 0 0 0 26426 61737.44140625 1 0 0 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VDNINRWPSF_ REV__ENST00000561192.1_1_15:101152406-101152685:+|nuORF 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98656.9 NaN 21393 5033 26426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26430 103.48 NaN 82336 35 0 17974 0.327 + 23977 RVRLELRRHQR 11 39 506.9785250990774 1517.9137458974321 3 506.97784423828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RVRLELRRHQR_ ENSG00000130304|ENST00000252595|SLC27A1;ENST00000598424.5_1_19:17597384-17597952:+|nuORF 0 0.41892066650488113 2 Y 1 11 3.4949 0 0 0.23024 0 0 1029.6753558601258 322.1408785455688 1351.8162344056946 0 0 0 0 0 0 0 0 0 Y 0.23024 - 2 + NaN NaN 101611 NaN 21394 5034 26429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26431 103.48 NaN 62935 35 0 4188.8 0.261 -1 EDNDEFFMDFL 11 43 479.85626220703125 NaN 0 479.85626220703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _EDNDEFFM(Oxidation (M))DFL_ ENSG00000188076|ENST00000342878|SCGB1C1;ENSG00000268320|ENST00000595228|SCGB1C2 0.5059551277355931 0.3406848944787997 2 RN 2 -1 7.0783 0 0 0.7391 0 0 341.35058720527496 343.17511926822505 684.5257064735 0 0 0 0 0 0 0 0 0 RN 0.7391 - 4 + NaN NaN 100806.4 NaN 21395 5034 26429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26432 103.48 NaN 64981 35 0 9274.5 0.261 + -1 VKNMMQMGYCI 11 43 474.8677673339844 NaN 0 474.8677673339844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),3 Oxidation (M) _VKNM(Oxidation (M))M(Oxidation (M))QM(Oxidation (M))GYC(Carbamidomethyl (C))I_ REV__ENSG00000163655|ENST00000496455|GMPS 0.4545168274142398 0.3408308101233591 2 M 1 -1 3.9794 0 0 0.41989 0 0 491.5132661603531 322.1408785455688 813.6541447059219 0 0 0 0 0 0 0 0 0 M 0.41989 + + 2 + NaN NaN 98177.1 NaN 21396 5034 26429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26434 103.49 NaN 55491 35 0 5367.4 0.327 + 26681 SYALLWNLL 9 35 546.8077005577284 1091.6008481822566 2 546.8071899414062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SYALLWNLL_ ENSG00000050555|ENST00000361069|LAMC3 3.944395688203298 0.32111559684428237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 108284.6 NaN 21397 5035 26433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26435 103.49 NaN 80460 35 0 9667.9 0.261 + 16742 LYCGKCHN 8 34 469.2046300769638 NaN 0 468.82806396484375 PEAK HCD FTMS 0 0 0 26433 11864.1044921875 0.44248430925044907 -2 0.02142333984375 2 Unmodified _LYCGKCHN_ ENSG00000182541|ENST00000331728|LIMK2;nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2 0.7936320650641473 0.38822285293237185 2 V 1 8 5.4846 0 0 0.58571 0 0 131.84919837089677 702.4538057916624 834.3030041625591 0 0 0 0 0 0 0 0 0 V 0.58571 - 1 + NaN NaN 122082.5 NaN 21398 5035 26433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26436 103.5 NaN 99145 35 0 17303 0.261 -1 LCAKTKFN 8 38 491.26208042774266 NaN 0 491.2623291015625 PEAK HCD FTMS 0 0 0 26433 29237.48828125 1 0 0 3 Carbamidomethyl (C) _LC(Carbamidomethyl (C))AKTKFN_ ENSG00000119231|ENST00000323460|SENP5;nc|ENSG00000119231|Q96HI0-2|SENP5 2.577480529830294 0.38822285293237185 2 N 1 -1 3.9794 0 0 0.40585 0 0 508.30524498458846 355.13971887760005 863.4449638621885 0 0 0 0 0 0 0 0 0 N 0.40585 + + 5 + NaN NaN 124621.4 NaN 21399 5035 26433 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26438 103.5 NaN 217450 35 0 60161 0.326 -1 DMIKEIKKKV 10 37 624.3724811522592 NaN 0 624.3709716796875 PEAK HCD FTMS 0 0 0 26437 39516.8828125 0.5808266698665853 -1 0.0127105712890625 1 Oxidation (M) _DM(Oxidation (M))IKEIKKKV_ tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1 1.4819007175156935 0.33891598740166873 2 V 1 -1 6.9897 0 0 0.56064 0 0 130.17897001760576 1014.4547823541624 1144.6337523717682 0 0 0 0 0 0 0 0 0 V 0.56064 + + 2 + NaN NaN 127478.1 NaN 21400 5036 26437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26439 103.51 NaN 132540 35 0 15159 0.261 -1 MDECHATGFL 10 41 598.7405796139627 NaN 0 598.7395629882812 PEAK HCD FTMS 0 0 0 26437 35489.95703125 0.5548671768109329 3 -0.0359649658203125 2 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DEC(Carbamidomethyl (C))HATGFL_ ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion 3.5964929083625545 0.337106189561315 2 WDVD 4 -1 26.675 0 0 2.2314 0 0 387.0930844214816 290.14948450260005 677.2425689240816 0 0 0 0 0 1.6549471895720984 0 0.5 0 WDVD 2.2314 - 35 + NaN NaN 120778.7 NaN 21401 5036 26437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26441 103.51 NaN 270480 35 0 67443 0.411 -1 TVHCSAGV 8 63 415.6952659668927 829.3759790005854 2 415.6949462890625 MULTI HCD FTMS 0 0 0 26440 67199.328125 1 0 0 1 Carbamidomethyl (C) _TVHC(Carbamidomethyl (C))SAGV_ ENSG00000142949|ENST00000359947|PTPRF;ENST00000477970.1_1_1:44086064-44087671:+|nuORF;nc|ENSG00000142949|P10586-2|PTPRF 2.577480529830294 0.5381683276125971 2 {[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}P[WP] 7 -1 + 0 0 0 0 0 39.845 0 0 0 0 6.40331305698745 0 0 0 0 0 0 0 {[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}P[WP] 0 - 19 + NaN NaN 168971.5 NaN 21402 5037 26440 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26443 103.52 NaN 204470 35 0 42425 0.327 -1 MYIIPVVLF 9 44 555.8168660238879 1109.6191791145757 2 555.8175659179688 MULTI HCD FTMS 0 0 0 26442 62204.30859375 0.06956774091474124 69 -0.6733856201171875 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 36.466142684027034 0.08156716203802528 2 V{I|L}{M(Oxidation (M))|F} 3 -1 39.693 0 0 3.5771 0 0 732.3880482404312 0 732.3880482404312 0 39.69273760456403 0 0 0 1.3494850021680094 0 0 0 V{I|L}{M(Oxidation (M))|F} 3.5771 + + 22 NaN NaN 128559.4 NaN 21403 5038 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26444 103.52 NaN 279190 35 0 39862 0.261 + 14814 LIRVLWRYM 9 40 625.3671388841785 1248.719724835157 2 625.3677978515625 MULTI HCD FTMS 0 0 0 26442 48126.12890625 0.6793403869855551 1 -0.0192413330078125 2 Unmodified _LIRVLWRYM_ REV__ENSG00000163904|ENST00000296257|SENP2 0.5247636613948944 0.34703895399870666 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 140238.4 NaN 21404 5038 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26445 103.53 NaN 296850 35 0 77325 0.264 + 34519 YPGPGGPW 8 50 415.6952659668927 829.3759790005854 2 415.695068359375 MULTI HCD FTMS 0 0 0 26442 11222.6494140625 0.16700538126194994 1 -0.0192413330078125 3 Unmodified _YPGPGGPW_ REV__ENST00000389817.7_1_11:17417252-17419904:-|nuORF 0.7936320650641473 0.540814922690045 2 {[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}P[WP] 7 -1 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0 0 0 0 {[TV]|[{I|L}S]}{[QC]|[C(Carbamidomethyl (C))A]}P[WP] 0 - 7 + NaN NaN 132694.7 NaN 21405 5038 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26446 103.53 NaN 63032 35 0 7854.4 0.261 -1 FLRFMACLL 9 24 585.8131207731552 1169.6116886131103 2 585.8138427734375 MULTI HCD FTMS 0 0 0 26442 16648.83984375 0.29433975945799146 -5 0.0508575439453125 4 Carbamidomethyl (C) _FLRFMAC(Carbamidomethyl (C))LL_ DENND4B|p.G568E|1|0.04|ENSG00000198837|chr1:153939705-153939705|C/T|missense_variant;DENND4B|p.G568R|1|0.04|ENSG00000198837|chr1:153939706-153939706|C/T|missense_variant;ENSG00000198837|ENST00000361217|DENND4B 7.910154910731844 0.2910521888787154 2 {I|L}{I|L} 2 -1 25.969 0 0 2.2203 0 0 925.4311166432416 0 925.4311166432416 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2203 + + 3 NaN NaN 103274.5 NaN 21406 5038 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26447 103.53 NaN 89179 35 0 17722 0.261 + 3286 EEFFQNSKLL 10 36 627.8214721679688 NaN 0 627.8214721679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _EEFFQNSKLL_ ENSG00000198836|ENST00000361510|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313-2|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313|OPA1 1.4819007175156935 0.33891598740166873 2 {M(Oxidation (M))|F} 1 9 5.4846 0 0 0.43785 0 0 604.3266309844265 498.1989840143188 1102.5256149987454 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.43785 + + 2 + NaN NaN 107173.9 NaN 21407 5038 26442 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26449 103.54 NaN 183730 35 0 57057 0.411 -1 MPDVIDFLVL 10 55 589.3118992586501 1176.6092455841 2 589.312744140625 MULTI HCD FTMS 0 0 0 26448 53559.94921875 0.44642094459903586 5 -0.03577423095703125 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 13.042465956692817 0.38911719078024076 2 {I|L}V{I|L} 3 -1 28.812 0 0 2.4488 0 0 833.3588734357437 0 833.3588734357437 0 2.870156338638594 0 0 0 0.5 0 0 0 {I|L}V{I|L} 2.4488 + + 145 NaN NaN 159297.8 NaN 21408 5039 26448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26451 103.55 NaN 685070 35 0 128760 0.411 + 6212 FPEPLIIPVL 10 62 569.3496415938315 1136.684730254463 2 569.3499145507812 MULTI HCD FTMS 0 0 0 26450 468638.4375 0.41713763444903973 7 -0.054168701171875 1 Unmodified _FPEPLIIPVL_ BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;ENSG00000198604|ENST00000360310|BAZ1A;ENST00000553853.1_1_14:35297835-35331506:-|nuORF;nc|ENSG00000198604|Q9NRL2-2|BAZ1A 36.12702656103203 0.1790159924230938 2 {I|L}{I|L}PV{I|L} 5 5 51.454 0 0 4.5266 0 0 583.2993217903933 0 583.2993217903933 0 22.491552768948004 0 0 0 1.3494850021680094 0 0 0 + {I|L}{I|L}PV{I|L} 4.5266 + + 102 NaN NaN 317044.7 NaN 21409 5040 26450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26454 103.56 NaN 129610 35 0 8360.8 0.411 + -1 GFSALLCLHD 10 71 566.7758484339437 NaN 0 566.798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 2 S 1 -1 13.979 0 0 1.2354 0 0 204.0928553595898 837.3886858799801 1041.4815412395699 0 0 0 0 0 0.8494850021680094 0 0 0 S 1.2354 + + 34 + NaN NaN 130719.6 NaN 21410 5042 26453 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26456 103.57 NaN 132280 35 0 28999 0.411 + 10525 IPFADALDLF 10 53 561.2973222461716 1120.580091559143 2 561.2976684570312 MULTI HCD FTMS 0 0 0 26455 70562.9609375 0.20252448530146444 10 -0.08330535888671875 1 Unmodified _IPFADALDLF_ ENSG00000146143|ENST00000615550|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENST00000490313.1_1_6:57244770-57299810:+|nuORF 43.85829265575387 0.11192494793849486 2 {I|L}D{I|L}{M(Oxidation (M))|F} 4 6 48.488 0 0 4.327 0 0 614.3065663068375 0 614.3065663068375 0 41.49797211252192 0 0 0 1.3807196863200843 0 0.4247425010840047 0 + {I|L}D{I|L}{M(Oxidation (M))|F} 4.327 + + 64 NaN NaN 139761.7 NaN 21411 5043 26455 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26458 103.57 NaN 102400 35 0 15289 0.327 + 13828 KYPSPFFVF 9 43 566.2972772026928 1130.5800014721856 2 566.2978515625 MULTI HCD FTMS 0 0 0 26457 20497.1796875 0.29317084993587683 1 -0.00930023193359375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 2 V{M(Oxidation (M))|F} 2 7 24.222 0 0 2.1424 0 0 866.4298432210728 0 866.4298432210728 0 13.764100213633766 0 0 0 0.3252574989159953 0 0 0 + V{M(Oxidation (M))|F} 2.1424 + + 9 NaN NaN 108260 NaN 21412 5044 26457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26459 103.58 NaN 162780 35 0 43230 0.261 + 23335 RKFLKWRDV 9 38 624.3724811522592 NaN 0 624.37255859375 PEAK HCD FTMS 0 0 0 26457 36422.17578125 0.5353400765109712 6 -0.05187225341796875 2 Unmodified _RKFLKWRDV_ REV__tr|U7SVP5|U7SVP5_FUSNURiboflavinbiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01294PE=3SV=1 0.5247636613948944 0.2927039108006614 2 V 1 -1 6.9897 0 0 0.56064 0 0 130.18714872854326 1014.4530123346311 1144.6401610631744 0 0 0 0 0 0 0 0 0 V 0.56064 + + 1 + NaN NaN 131525.4 NaN 21413 5044 26457 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26461 103.58 NaN 133710 35 0 29438 0.327 + 14551 LFGTCFFAFIH 11 38 434.8822201250045 NaN 0 434.88226318359375 PEAK HCD FTMS 0 0 0 26460 73231.7578125 0.5552457912298358 -26 0.2501068115234375 1 Unmodified _LFGTCFFAFIH_ REV__ENSG00000155511|ENST00000285900|GRIA1;REV__ENST00000474198.1_1_5:152870409-152873630:+|nuORF;REV__nc|ENSG00000155511|P42261-2|GRIA1;REV__nc|ENSG00000155511|P42261-3|GRIA1 1.4551175022131473 0.3379923941668102 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101561.6 NaN 21414 5045 26460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26462 103.59 NaN 144210 35 0 46137 0.261 + 35905 YYSYVALSVL 10 41 589.3122954275741 NaN 0 589.3110961914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YYSYVALSVL_ REV__ENSG00000175322|ENST00000590202|ZNF519 6.2057823575117 0.3348729994311477 2 V 1 -1 6.9897 0 0 0.59405 0 0 131.09618888808023 943.4234227426988 1074.519611630779 0 0 0 0 0 0 0 0 0 V 0.59405 + + 6 + NaN NaN 107537.8 NaN 21415 5045 26460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26464 103.59 NaN 369190 35 0 94127 0.411 -1 SSLVLLLCLTC 11 51 639.843426721051 1277.6723005089018 2 639.8435668945312 MULTI HCD FTMS 0 0 0 26463 71546.390625 0.2819085169578448 7 -0.05744171142578125 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 2 M 1 -1 9.6041 0 0 0.75169 0 0 701.3134530004205 442.2956448870757 1143.6090978874963 0 0 0 0 0 0.5 0 0 0 M 0.75169 - 8 + NaN NaN 223967.9 NaN 21416 5046 26463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26466 103.6 NaN 757200 35 0 214820 0.327 -1 0 47 595.3780751659368 594.3707986993368 1 595.3787231445312 MULTI HCD FTMS 0 0 0 26465 111900.3984375 0.7381847415769922 7 -0.05754852294921875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 208490.2 NaN 21417 5047 26465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26467 103.6 NaN 160590 35 0 46802 0.261 -1 YYIIFSIIM 9 44 589.8141043159915 NaN 0 589.7553100585938 PEAK HCD FTMS 0 0 0 26465 11360.224609375 0.2511143228161315 3 -0.0259857177734375 2 Oxidation (M) _YYIIFSIIM(Oxidation (M))_ ENSG00000135185|ENST00000257637|TMEM243;ENST00000481425.5_1_7:86825954-86846082:-|nuORF 2.302733041254933 0.2840881193086663 2 V 1 -1 6.9897 0 0 0.59355 0 0 132.1003995331817 943.4201191578085 1075.5205186909902 0 0 0 0 0 0 0 0 0 V 0.59355 - 1 + NaN NaN 127690.5 NaN 21418 5047 26465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26469 103.61 NaN 43602 35 0 2916.4 0.327 + 14833 LKDWEPSI 8 35 494.2607594781488 986.5069660230977 2 494.2608642578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LKDWEPSI_ ENST00000514132.1_1_5:11386040-11386076:-|nuORF 4.3292370932331545 0.5355693454741696 2 [HV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{I|L} 8 5 + 0 0 0 0 0 39.845 0 0 0 0 0 0 0 0 0.3494850021680094 0 0 0 [HV]{[{M(Oxidation (M))|F}Q]|[{M(Oxidation (M))|F}K]}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}S{I|L} 0 - 5 + NaN NaN 112061.1 NaN 21419 5048 26468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26470 103.61 NaN 41698 35 0 6531.1 0.261 + 10756 ISAWIYGLGL 10 23 546.807971625172 NaN 0 546.8082885742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _ISAWIYGLGL_ ENSG00000136297|ENST00000401401|MMD2;nc|ENSG00000136297|Q8IY49-3|MMD2;nc|ENSG00000136297|Q8IY49|MMD2 3.944395688203298 0.33680843299986807 2 N 1 10 9.6041 0 0 0.87982 0 0 619.331109410697 355.1973055475219 974.528414958219 0 0 0 0 0 0.5 0 0 0 N 0.87982 - 1 + NaN NaN 91598.4 NaN 21420 5048 26468 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26472 103.62 NaN 114260 35 0 11256 0.411 -1 MDECHATGFL 10 49 598.7407629187833 NaN 0 598.7412109375 PEAK HCD FTMS 0 0 0 26471 37699.22265625 0.5306108142992095 7 -0.053131103515625 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DEC(Carbamidomethyl (C))HATGFL_ ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion 3.5964929083625545 0.337106189561315 2 RSVDW 5 -1 26.032 0 0 2.1776 0 0 165.08081675377895 384.0690096490844 549.1498264028634 0 0 0 0 0 1.25 0 0 0 RSVDW 2.1776 - 45 + NaN NaN 147111.3 NaN 21421 5049 26471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26474 103.63 NaN 87504 35 0 9655.4 0.327 + 13642 KYPENFFLL 9 35 585.8131207731552 1169.6116886131103 2 586.3139038085938 MULTI HCD FTMS 0 0 0 26473 16573.42578125 0.39510771227928365 -14 0.1236114501953125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 13.042465956692817 0.2476723265019929 2 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4321089703164 0 925.4321089703164 0 20.154856465551987 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 13 NaN NaN 109091.7 NaN 21422 5050 26473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26475 103.63 NaN 46954 35 0 7636.8 0.262 + 28332 TNKHFTDV 8 34 481.2409387713813 NaN 0 481.2777404785156 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TNKHFTDV_ tr|U7SNF7|U7SNF7_FUSNUDUF5673domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01831PE=4SV=1 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100403.5 NaN 21423 5050 26473 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26477 103.64 NaN 93759 35 0 8976.2 0.411 + -1 DSCDEDVIF 9 48 550.2178082411438 NaN 0 549.7901000976562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _DSC(Carbamidomethyl (C))DEDVIF_ REV__ENSG00000138735|ENST00000354960|PDE5A;REV__ENST00000508914.1_1_4:120473609-120484125:-|nuORF;REV__nc|ENSG00000138735|O76074-2|PDE5A 2.302733041254933 0.2840881193086663 2 {M(Oxidation (M))|F}V{I|L}S 4 -1 19.993 0 0 1.8201 0 0 131.9511968023457 517.1919827677743 649.1431795701201 0 0 0 0 0 0 0 0.805462187404089 0 {M(Oxidation (M))|F}V{I|L}S 1.8201 - 17 + NaN NaN 115637.7 NaN 21424 5051 26476 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26479 103.64 NaN 165800 35 0 28238 0.411 + 18673 MYIIPVVLF 9 60 555.8168660238879 1109.6191791145757 2 555.8176879882812 MULTI HCD FTMS 0 0 0 26478 47388.38671875 0.052997984932972995 83 -0.8467178344726562 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 45.7499826716795 0.03894913563566938 2 KV{I|L}{M(Oxidation (M))|F} 4 6 41.186 0 0 3.7117 0 0 604.2927113263687 0 604.2927113263687 0 29.463950151760656 0 0 0 1.274227503252014 0 0 0 KV{I|L}{M(Oxidation (M))|F} 3.7117 - 64 NaN NaN 134621.5 NaN 21425 5052 26478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26481 103.65 NaN 103150 35 0 9541.9 0.411 -1 MDECHATGFL 10 52 598.7407629187833 NaN 0 598.7405395507812 PEAK HCD FTMS 0 0 0 26480 25054.81640625 0.3526427230783627 10 -0.0932464599609375 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))DEC(Carbamidomethyl (C))HATGFL_ ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT;TBC1D22A-GCAT|1|fusion;TBC1D22A-GCAT|2|fusion 3.5964929083625545 0.337106189561315 2 RSVDW 5 -1 28.998 0 0 2.4256 0 0 165.08301401940395 384.0681246393188 549.1511386587227 0 0 0 0 0 1.25 0 0 0 RSVDW 2.4256 - 36 + NaN NaN 118302.5 NaN 21426 5053 26480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26484 103.66 NaN 71242 35 0 26838 0.411 -1 0 40 541.3219060238589 540.3146295572589 1 541.322021484375 MULTI HCD FTMS 0 0 0 26483 35320.58203125 0.09707329366377537 22 -0.2232666015625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 116157.5 NaN 21427 5055 26483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26486 103.67 NaN 69854 35 0 5776.9 0.411 -1 0 41 625.6322631835938 NaN 0 625.6322631835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116850.9 NaN 21428 5056 26485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26488 103.68 NaN 98675 35 0 13173 0.327 + 13643 KYPENFFLL 9 33 585.8131207731552 1169.6116886131103 2 586.3165283203125 MULTI HCD FTMS 0 0 0 26487 6886.552734375 0.16417427104587026 -8 0.06060791015625 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 26.682 0 0 2.2813 0 0 778.3629627912125 0 778.3629627912125 0 26.682437647924218 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.2813 + + 6 NaN NaN 109638.9 NaN 21429 5057 26487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26489 103.68 NaN 59785 35 0 13305 0.263 -1 LDPVMFFKCPS 11 32 452.8805619550116 NaN 0 452.8700866699219 PEAK HCD FTMS 0 0 0 26487 13738.7490234375 0.9015992523927968 -1 0.007476806640625 2 Carbamidomethyl (C),Oxidation (M) _LDPVM(Oxidation (M))FFKC(Carbamidomethyl (C))PS_ ENSG00000100219|ENST00000344347|XBP1 0.4545168274142398 0.3408308101233591 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124955.9 NaN 21430 5057 26487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26490 103.69 NaN 24144 35 0 4143.8 0.261 -1 DCCCCCYSC 9 17 644.1535034179688 NaN 0 644.1535034179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 5 Carbamidomethyl (C) _DC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))YSC_ ENST00000373053.7_2_10:74647032-74647206:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116178 NaN 21431 5057 26487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26493 103.7 NaN 69191 35 0 16749 0.327 -1 0 31 558.3483655066976 557.3410890400976 1 558.3483276367188 MULTI HCD FTMS 0 0 0 26492 31793.47265625 0.04430680947687982 33 -0.33336639404296875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113316 NaN 21432 5059 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26494 103.7 NaN 49364 35 0 6258.5 0.261 + 8822 HKKAFTQGCL 10 29 566.7990234963733 NaN 0 566.7992553710938 PEAK HCD FTMS 0 0 0 26492 15467.71875 0.6378961683887521 3 -0.034698486328125 2 Unmodified _HKKAFTQGCL_ REV__ENSG00000198205|ENST00000358697|ZXDA 1.4819007175156935 0.33891598740166873 2 S 1 -1 5.4846 0 0 0.48468 0 0 204.13685206911515 837.3916109674436 1041.5284630365588 0 0 0 0 0 0 0 0 0 S 0.48468 - 2 + NaN NaN 106934.8 NaN 21433 5059 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26495 103.71 NaN 72277 35 0 22837 0.261 + 1804 CPGWKKAQFI 10 30 589.3122954275741 NaN 0 589.3126220703125 PEAK HCD FTMS 0 0 0 26492 25929.927734375 0.4083662946515769 11 -0.12691497802734375 3 Unmodified _CPGWKKAQFI_ ENSG00000173809|ENST00000639142|TDRD12;nc|ENSG00000173809|Q587J7|TDRD12 3.2813086475875832 0.33737594360511275 2 V 1 10 4.6041 0 0 0.3913 0 0 131.1031542322981 943.4191148501089 1074.522269082407 0 0 0 0 0 0 0 0 0 V 0.3913 - 1 + NaN NaN 100966.2 NaN 21434 5059 26492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26497 103.71 NaN 63446 35 0 11702 0.327 + 23999 RWCHTPPLL 9 35 561.7987641558153 NaN 0 561.798828125 PEAK HCD FTMS 0 0 0 26496 4690.73388671875 0.2232223511991649 1 -0.0095672607421875 1 Unmodified _RWCHTPPLL_ REV__ENST00000444348.1_1_1:36035435-36040229:-|nuORF 4.75600775471527 0.27219989241163056 2 {I|L}D 2 -1 10.969 0 0 0.978 0 0 166.08332097263389 724.3639620416624 890.4472830142963 0 0 0 0 0 0 0 0 0 {I|L}D 0.978 - 4 + NaN NaN 96246.9 NaN 21435 5060 26496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26498 103.72 NaN 54704 35 0 8941.9 0.261 + -1 RPRCPLTFG 9 35 552.2932156682281 NaN 0 552.2931518554688 PEAK HCD FTMS 0 0 0 26496 20560.880859375 0.9103533959210224 -2 0.01959991455078125 2 Carbamidomethyl (C) _RPRC(Carbamidomethyl (C))PLTFG_ REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF 4.75600775471527 0.27219989241163056 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104121.5 NaN 21436 5060 26496 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26500 103.72 NaN 87021 35 0 13111 0.327 + 21376 PTVIVLELL 9 35 498.82067221429594 NaN 0 498.8205871582031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PTVIVLELL_ ENST00000606070.1_1_6:108279003-108279531:+|nuORF 14.838274106304384 0.2220448417561729 2 {I|L}E{I|L} 3 6 21.22 0 0 2.1313 0 0 131.09464160379042 506.29905115299067 637.3936927567811 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L}E{I|L} 2.1313 + + 11 + NaN NaN 96088.9 NaN 21437 5061 26499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26501 103.73 NaN 26485 35 0 5330.4 0.261 + 23747 RREQVSSEL 9 17 552.2932156682281 NaN 0 552.2936401367188 PEAK HCD FTMS 0 0 0 26499 6063.14990234375 0.26845197641715385 -1 0.0095672607421875 2 Unmodified _RREQVSSEL_ REV__ENST00000462445.1_1_10:70847907-70863646:+|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88710.4 NaN 21438 5061 26499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26502 103.73 NaN 59580 35 0 20918 0.261 + 20396 NYVKANYLPY 10 24 622.8181557575274 NaN 0 622.8179931640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 3.5964929083625545 0.337106189561315 2 C 1 10 6.9897 0 0 0.56204 0 0 640.2509832906422 497.3350924127563 1137.5860757033986 0 0 0 0 0 0 0 0 0 C 0.56204 - 2 + NaN NaN 97237.9 NaN 21439 5061 26499 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26504 103.73 NaN 84092 35 0 31308 0.327 + 23978 RVRLELRRHQR 11 27 506.9785250990774 1517.9137458974321 3 507.3136291503906 MULTI HCD FTMS 0 0 0 26503 74377.6796875 0.7706324341191693 36 -0.3762359619140625 1 Unmodified _RVRLELRRHQR_ ENSG00000130304|ENST00000252595|SLC27A1;ENST00000598424.5_1_19:17597384-17597952:+|nuORF 0 0.41892066650488113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 123258.9 NaN 21440 5062 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26505 103.74 NaN 188810 35 0 19737 0.261 + 29762 VEAWPVSSL 9 47 494.2607594781488 986.5069660230977 2 494.26068115234375 MULTI HCD FTMS 0 0 0 26503 133981.828125 1 0 0 2 Unmodified _VEAWPVSSL_ REV__ENSG00000181652|ENST00000639579|ATG9B 34.10243960390752 0.09241788333544565 2 WS{I|L} 3 -1 37.435 0 0 3.7947 0 0 582.2795447570867 0 582.2795447570867 0 17.76925019195367 0 0 0 1 0 0.4247425010840047 0 WS{I|L} 3.7947 - 44 NaN NaN 109877.5 NaN 21441 5062 26503 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26507 103.74 NaN 225210 35 0 67439 0.327 -1 0 32 577.3672783262992 576.3600018596992 1 577.348876953125 MULTI HCD FTMS 0 0 0 26506 31042.568359375 0.3485117256609419 17 -0.190826416015625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 147857.1 NaN 21442 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26508 103.75 NaN 41854 35 0 4008.7 0.262 -1 PMVCCCWLCC 10 42 468.8282418781303 NaN 0 468.82818603515625 PEAK HCD FTMS 0 0 0 26506 16663.53125 0.2517220140338612 1 -0.029327392578125 2 4 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))VC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))WLC(Carbamidomethyl (C))C_ ENST00000355315.7_2_8:57130132-57130228:+|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102711.5 NaN 21443 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26509 103.75 NaN 43151 35 0 4385.6 0.261 + 30468 VLSLVLFIA 9 34 487.8177650108468 973.6209770884936 2 487.8174133300781 MULTI HCD FTMS 0 0 0 26506 12510.564453125 0.301703837220519 1 -0.029327392578125 3 Unmodified _VLSLVLFIA_ ENST00000284006.10_1_19:34305159-34305372:+|nuORF 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95756.9 NaN 21444 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26510 103.75 NaN 114700 35 0 15323 0.261 + 13829 KYPSPFFVF 9 46 566.2972772026928 1130.5800014721856 2 566.2967529296875 MULTI HCD FTMS 0 0 0 26506 29515.5078125 0.42215986021514146 20 -0.21479034423828125 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 17.11289562659939 0.2125047172822487 2 V{M(Oxidation (M))|F} 2 7 23.271 0 0 2.0583 0 0 866.4308338849625 0 866.4308338849625 0 5.31234684152075 0 0 0 0.3807196863200844 0 0 0 + V{M(Oxidation (M))|F} 2.0583 + + 51 NaN NaN 104120.1 NaN 21445 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26511 103.76 NaN 26731 35 0 3610.5 0.262 + 14864 LKKKTLEV 8 21 479.8194885253906 NaN 0 479.8194885253906 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LKKKTLEV_ ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO 0.6903765706972694 0.38822285293237185 2 D 1 8 2.4743 0 0 0.25837 0 0 688.5111485822282 151.06893335513908 839.5800819373673 0 0 0 0 0 0 0 0 0 D 0.25837 - 1 + NaN NaN 97162 NaN 21446 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26512 103.76 NaN 34943 35 0 5189.1 0.261 -1 0 29 545.3449197728112 544.3376433062111 1 546.8086547851562 MULTI HCD FTMS 0 0 0 26506 4163.2548828125 0.18687014975919145 3 -0.0485687255859375 6 NaN NaN 2 T 1 -1 1.9897 0 0 0.36553 0 0 219.37769565171737 220.89092432193596 440.26861997365336 0 0 0 0 0 0 0 0 0 T 0.36553 - 1 + NaN NaN 104856 NaN 21447 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26513 103.76 NaN 58519 35 0 6344 0.261 -1 MKYDKPFL 8 38 550.2774602033506 NaN 0 549.8162841796875 PEAK HCD FTMS 0 0 0 26506 23435.767578125 0.9545164734277574 3 -0.0485687255859375 7 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))KYDKPFL_ tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1 2.8892196856762586 0.38822285293237185 2 V 1 -1 3.9794 0 0 0.36224 0 0 721.310278217445 275.14060388736567 996.4508821048107 0 0 0 0 0 0 0 0 0 V 0.36224 - 5 + NaN NaN 98143.1 NaN 21448 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26514 103.77 NaN 68885 35 0 11252 0.261 + -1 MYALIILPI 9 37 531.8170733801026 NaN 0 531.8174438476562 PEAK HCD FTMS 0 0 0 26506 30422.705078125 1 0 0 8 Oxidation (M) _M(Oxidation (M))YALIILPI_ REV__tr|U7SVX0|U7SVX0_FUSNUDUF2179domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01369PE=4SV=1 2.302733041254933 0.2840881193086663 2 Y 1 -1 0.48455 0 0 0.045643 0 0 726.5378810357926 168.98720728092033 895.5250883167129 0 0 0 0 0 0 0 0 0 Y 0.045643 + + 2 + NaN NaN 100477.2 NaN 21449 5063 26506 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26516 103.77 NaN 129820 35 0 19163 0.327 + 31274 VWAFSFLTSL 10 43 585.8131207731552 1169.6116886131103 2 585.8135375976562 MULTI HCD FTMS 0 0 0 26515 16778.423828125 0.296630713010822 21 -0.20056915283203125 1 Unmodified _VWAFSFLTSL_ ENST00000548198.5_1_12:57999629-57999917:+|nuORF 6.2057823575117 0.44245551207394906 2 {I|L}{I|L} 2 8 25.969 0 0 2.2203 0 0 925.43071181465 0 925.43071181465 0 11.276362525516532 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.2203 - 12 NaN NaN 111935 NaN 21450 5064 26515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26517 103.78 NaN 26215 35 0 4120.3 0.261 + 32679 WPGHQPQQFI 10 22 619.308885849285 NaN 0 619.3082275390625 PEAK HCD FTMS 0 0 0 26515 10330.69140625 0.36476528275113657 12 -0.1079864501953125 2 Unmodified _WPGHQPQQFI_ REV__ENSG00000197586|ENST00000376652|ENTPD6 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98141.8 NaN 21451 5064 26515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26519 103.78 NaN 52199 35 0 7489.2 0.327 + -1 LVYMLVPLF 9 27 555.8169085204337 1109.6192641076673 2 555.8175048828125 MULTI HCD FTMS 0 0 0 26518 10368.296875 0.16248919048270288 2 -0.01906585693359375 1 Oxidation (M) _LVYM(Oxidation (M))LVPLF_ REV__ENSG00000100599|ENST00000216487|RIN3;REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF;REV__nc|ENSG00000100599|Q8TB24-4|RIN3 9.347437153973935 0.2795965555214564 2 {I|L}{M(Oxidation (M))|F} 2 -1 25.969 0 0 2.3404 0 0 831.4594710761386 0 831.4594710761386 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{M(Oxidation (M))|F} 2.3404 + + 2 NaN NaN 98421.6 NaN 21452 5065 26518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26520 103.79 NaN 40951 35 0 9304.6 0.261 + 23333 RKFAKLIMS 9 26 547.3325898150811 NaN 0 547.332275390625 PEAK HCD FTMS 0 0 0 26518 12836.041015625 0.4078556004228954 -21 0.2082061767578125 2 Unmodified _RKFAKLIMS_ MTR|p.A392S|1|0.12|ENSG00000116984|chr1:236832064-236832064|G/T|missense_variant 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113881.4 NaN 21453 5065 26518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26522 103.79 NaN 56211 35 0 6679.8 0.326 + -1 RQWCRCIRM 9 35 436.8799070056862 1307.6178916172587 3 437.2145690917969 MULTI HCD FTMS 0 0 0 26521 33403.6640625 0.4956271658561098 33 -0.3255157470703125 1 Carbamidomethyl (C) _RQWC(Carbamidomethyl (C))RCIRM_ REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF 0.235843874597859 0.3492291811235561 2 S 1 -1 3.0989 0 0 0.23699 0 0 802.4827730643275 415.0832918756469 1217.5660649399745 0 0 0 0 0 0 0 0 0 S 0.23699 - 1 + NaN NaN 99214.5 NaN 21454 5066 26521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26523 103.8 NaN 57381 35 0 7084.7 0.261 + -1 AFAFYTCA 8 29 496.7122824228834 NaN 0 496.71246337890625 PEAK HCD FTMS 0 0 0 26521 10667.2041015625 0.4645405622228303 -20 0.19925689697265625 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))AFAFYTC(Carbamidomethyl (C))A_ REV__ENSG00000125384|ENST00000245457|PTGER2;REV__PTGER2|p.E105Q|1|0.15|ENSG00000125384|chr14:52314861-52314861|G/C|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99586.5 NaN 21455 5066 26521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26525 103.8 NaN 72161 35 0 5422.3 0.411 -1 0 55 499.1574414975237 498.1501650309237 1 499.157470703125 MULTI HCD FTMS 0 0 0 26524 8671.2392578125 0.14451232790298216 -6 0.08040618896484375 1 NaN NaN 2 E{I|L}{I|L} 3 -1 5.9421 0 0 1.1928 0 0 124.92852914400807 0 124.92852914400807 0 5.942124970647031 0 0 0 0 0 0 0 E{I|L}{I|L} 1.1928 - 14 + NaN NaN 110647.7 NaN 21456 5067 26524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26527 103.81 NaN 28980 35 0 5289.8 0.327 -1 SRCRRRRHH 9 20 440.9064184592113 NaN 0 440.79949951171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _SRC(Carbamidomethyl (C))RRRRHH_ ENST00000468388.5_1_1:26799003-26799973:+|nuORF;ENST00000479815.5_1_1:26799003-26799978:+|nuORF 0.26902006276349055 0.29394320858957723 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87860.2 NaN 21457 5068 26526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26528 103.81 NaN 37885 35 0 5034.3 0.261 -1 0 31 588.4575805664062 NaN 0 588.4575805664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 D 1 -1 6.9897 0 0 0.59492 0 0 714.7423351544936 342.10822473697505 1056.8505598914687 0 0 0 0 0 0 0 0 0 D 0.59492 - 5 + NaN NaN 113692.6 NaN 21458 5068 26526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26530 103.82 NaN 84314 35 0 8346.3 0.411 -1 0 72 452.9483303979006 1355.8231617939018 3 452.9482727050781 MULTI HCD FTMS 0 0 0 26529 28559.19140625 0.14799843741535967 -17 0.17566680908203125 1 NaN NaN 2 P 1 -1 6.5938 0 0 0.48633 0 0 1135.6923614782752 120.05045496158436 1255.7428164398596 0 0 0 0 0 0.5 0 0 0 P 0.48633 - 11 + NaN NaN 135132.8 NaN 21459 5069 26529 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26535 103.85 NaN 313700 35 0 67873 0.327 + 20735 PFYYQVYCDAE 11 36 466.52882538706655 1396.5646467613997 3 466.52874755859375 MULTI HCD FTMS 0 0 0 26534 108226.890625 0.19761749881740842 -31 0.28614044189453125 1 Unmodified _PFYYQVYCDAE_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 4.11662792887243 0.40086653484894175 2 PE 2 -1 25.217 0 0 1.8056 0 0 1152.4428723989233 0 1152.4428723989233 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 PE 1.8056 - 6 NaN NaN 125583.8 NaN 21460 5073 26534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26536 103.85 NaN 39595 35 0 5122.5 0.261 + 24284 RYFLPPYTF 9 22 602.3138126178053 NaN 0 602.3143920898438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.24642998803896465 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92853.6 NaN 21461 5073 26534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26538 103.86 NaN 263280 35 0 53460 0.327 + -1 EIFCFIII 8 41 527.7856625080323 1053.5567720828644 2 527.7854614257812 MULTI HCD FTMS 0 0 0 26537 223989.484375 0.5831721154487658 -4 0.02927398681640625 1 Carbamidomethyl (C) _EIFC(Carbamidomethyl (C))FIII_ REV__ENST00000417404.2_1_17:28960066-28961284:+|nuORF 24.67388899826682 0.4122521268485776 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 40.974 0 0 3.8891 0 0 549.2245350568375 0 549.2245350568375 0 35.48963451112506 0 0 0 1.1421590589602533 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.8891 + + 16 NaN NaN 135756.5 NaN 21462 5074 26537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26539 103.86 NaN 68663 35 0 19967 0.261 + -1 CFCGDMRHEEC 11 32 481.8341769790191 NaN 0 481.8347473144531 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FC(Carbamidomethyl (C))GDMRHEEC_ REV__ENSG00000198788|ENST00000675028|MUC2;REV__nc|ENSG00000198788|Q02817|MUC2 0.09484139111097674 0.34185110575506755 2 {I|L} 1 -1 1.2591 0 0 0.13093 0 0 498.3924007336257 347.1489657037719 845.5413664373976 0 0 0 0 0 0 0 0 0 {I|L} 0.13093 - 1 + NaN NaN 116484.9 NaN 21463 5074 26537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26541 103.86 NaN 124470 35 0 21687 0.327 -1 0 34 577.3672783262992 576.3600018596992 1 577.3486938476562 MULTI HCD FTMS 0 0 0 26540 9084.5546875 0.10199136213050022 27 -0.2746124267578125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 116100.3 NaN 21464 5075 26540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26542 103.87 NaN 76001 35 0 7014.9 0.261 + 29763 VEAWPVSSL 9 40 494.26075466793765 NaN 0 494.2608337402344 PEAK HCD FTMS 0 0 0 26540 47435.19140625 0.5526866045258425 -3 0.02524566650390625 2 Unmodified _VEAWPVSSL_ REV__ENSG00000181652|ENST00000639579|ATG9B 15.847184025352803 0.21527282152051216 2 S 1 -1 14.732 0 0 1.4933 0 0 131.09642402472895 765.3580416315061 896.454465656235 0 0 0 0 0 0.5 0 0.4247425010840047 0 S 1.4933 + + 2 + NaN NaN 100476.4 NaN 21465 5075 26540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26543 103.87 NaN 164010 35 0 35295 0.261 + 18096 MNWKRREG 8 37 538.7770076898512 NaN 0 538.7774047851562 PEAK HCD FTMS 0 0 0 26540 20379.5078125 0.21427250123417646 -3 0.02524566650390625 3 Unmodified _MNWKRREG_ ENST00000451368.1_1_7:26412040-26412175:-|nuORF 1.844237919475145 0.38822285293237185 2 N 1 7 6.9897 0 0 0.64988 0 0 131.0408559189505 827.4127901666624 958.453646085613 0 0 0 0 0 0 0 0 0 + N 0.64988 + + 1 + NaN NaN 114292.1 NaN 21466 5075 26540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26544 103.88 NaN 83438 35 0 7742.1 0.261 + 21304 PSEAISWLSL 10 45 551.7926025390625 NaN 0 551.7926025390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PSEAISWLSL_ REV__ENSG00000163029|ENST00000448223|SMC6;REV__nc|ENSG00000163029|Q96SB8-2|SMC6 12.240655878213236 0.32970798410958835 2 S{I|L}W 3 -1 24.693 0 0 2.2416 0 0 131.09061884589988 581.2593477838499 712.3499666297498 0 0 0 0 0 1 0 0 0 S{I|L}W 2.2416 - 12 + NaN NaN 99310 NaN 21467 5075 26540 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26546 103.88 NaN 482210 35 0 42404 0.326 + 10391 IMWNGSETKE 10 65 597.7768066949734 1193.5390604567467 2 597.7775268554688 MULTI HCD FTMS 0 0 0 26545 31921.703125 0.8534930372369153 -23 0.230560302734375 1 Unmodified _IMWNGSETKE_ REV__CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant;REV__CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;REV__ENSG00000135837|ENST00000367607|CEP350 36.506200033944 0.17572556831573002 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}N[{I|L}P]D{M(Oxidation (M))|F}E 9 -1 73.42 0 0 6.1515 0 0 0 84.00966134927344 84.00966134927344 53.727496652734246 0 0 0 0 2.6237125054200234 1.5228787452803376 0.3494850021680094 1.055462187404089 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}N[{I|L}P]D{M(Oxidation (M))|F}E 6.1515 - 1042 NaN NaN 178891.4 NaN 21468 5076 26545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26548 103.89 NaN 106350 35 0 19974 0.327 + 13830 KYPSPFFVF 9 30 566.2972772026928 1130.5800014721856 2 566.2975463867188 MULTI HCD FTMS 0 0 0 26547 20612.779296875 0.2948242693940373 31 -0.31429290771484375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 17.11289562659939 0.2125047172822487 2 V{M(Oxidation (M))|F} 2 7 23.271 0 0 2.0583 0 0 866.4373974058087 0 866.4373974058087 0 12.81357210935475 0 0 0 0.3807196863200844 0 0 0 + V{M(Oxidation (M))|F} 2.0583 + + 14 NaN NaN 101535.3 NaN 21469 5077 26547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26549 103.89 NaN 27513 35 0 4802.6 0.261 + -1 LLAMYIIVF 9 18 549.8157735457519 1097.6169941583037 2 549.8165283203125 MULTI HCD FTMS 0 0 0 26547 14441.1044921875 0.2088197045644976 -1 0.0071258544921875 2 Oxidation (M) _LLAM(Oxidation (M))YIIVF_ REV__ENSG00000066455|ENST00000163416|GOLGA5 2.302733041254933 0.33356062215410776 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87764.6 NaN 21470 5077 26547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26550 103.9 NaN 35818 35 0 5571 0.261 + -1 YNIKHFFMK 9 25 622.3173217773438 NaN 0 622.3173217773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 7.289230182591677 0.2599242500475609 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.10992851386874 849.4020891629067 1126.5120176767755 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 102628.8 NaN 21471 5077 26547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26552 103.9 NaN 57821 35 0 6625.7 0.411 + 13683 KYPENFFLL 9 53 585.8131964938826 NaN 0 585.813232421875 PEAK HCD FTMS 0 0 0 26551 34156.23828125 0.642581535460276 6 -0.06539154052734375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2359303321180293 2 {I|L} 1 8 11.237 0 0 0.96076 0 0 131.09390707059998 922.4109192320382 1053.504826302638 0 0 0 0 0 0.4247425010840047 0 0 0 + {I|L} 0.96076 + + 7 + NaN NaN 121699.1 NaN 21472 5078 26551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26554 103.91 NaN 125970 35 0 32127 0.327 + 28574 TPVDFFFEF 9 36 574.7685592515478 1147.5225655698955 2 574.7685546875 MULTI HCD FTMS 0 0 0 26553 8943.1396484375 0.035031519349196766 -13 0.11602783203125 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 37.97399986684836 0.07464525285885698 2 [{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 4 + 48.125 0 0 4.1938 4.1938 90.34 0 0 0 0.4036245867396886 33.42023425729828 0.4036245867396886 48.12523417374508 0 1.6307196863200843 0 0.4247425010840047 0 [{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4.1938 - 91 NaN NaN 127569.4 NaN 21473 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26555 103.91 NaN 101050 35 0 15576 0.261 -1 MYIIPVVLF 9 42 555.8167296569536 1109.6189063807071 2 555.8169555664062 MULTI HCD FTMS 0 0 0 26553 10333.681640625 0.16826704734106743 3 -0.04267120361328125 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 14.581692164780916 0.23437375358055648 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8898 0 0 831.4715946494597 0 831.4715946494597 0 10 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8898 + + 14 NaN NaN 98508.1 NaN 21474 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26556 103.92 NaN 58341 35 0 12222 0.264 + 20458 PAPTGPHH 8 32 407.20396948162835 NaN 0 407.2035217285156 PEAK HCD FTMS 0 0 0 26553 51912.3984375 0.44314036736013523 114 -1.1213302612304688 3 Unmodified _PAPTGPHH_ REV__ENSG00000115568|ENST00000411696|ZNF142;REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF;REV__nc|ENSG00000115568|P52746|ZNF142 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112028.7 NaN 21475 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26557 103.92 NaN 43406 35 0 11769 0.261 + 19171 NIDKQFINM 9 25 561.7854614257812 NaN 0 561.7854614257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _NIDKQFINM_ REV__ENSG00000142405|ENST00000324134|NLRP12;REV__nc|ENSG00000142405|P59046-2|NLRP12;REV__nc|ENSG00000142405|P59046-3|NLRP12;REV__nc|ENSG00000142405|P59046-4|NLRP12;REV__nc|ENSG00000142405|P59046-6|NLRP12;REV__nc|ENSG00000142405|P59046-7|NLRP12 2.0597508629832335 0.2852655770354268 2 M 1 -1 5.9862 0 0 0.53419 0 0 447.2401213849624 539.3128756158811 986.5529970008436 0 0 0 0 0 0.28872548999643577 0 0 0 M 0.53419 + + 1 + NaN NaN 95531.9 NaN 21476 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26558 103.92 NaN 48328 35 0 6983.7 0.262 + 18018 MLLFLLLL 8 29 488.31982421875 NaN 0 488.31982421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _MLLFLLLL_ ENST00000379565.7_1_X:20173340-20173514:-|nuORF;REV__ENSG00000152705|ENST00000282611|CATSPER3 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95119 NaN 21477 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26559 103.93 NaN 28552 35 0 6899 0.261 + 3179 ECDLETRKKM 10 23 626.8038940429688 NaN 0 626.8038940429688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Unmodified _ECDLETRKKM_ ENSG00000173040|ENST00000344408|EVC2;nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2 1.4819007175156935 0.33891598740166873 2 {M(Oxidation (M))|F} 1 9 5.4846 0 0 0.43821 0 0 644.36761337715 457.1350496881469 1101.502663065297 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.43821 + + 1 + NaN NaN 96184.3 NaN 21478 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26560 103.93 NaN 19349 35 0 4077.7 0.261 + 4377 EWRVGRWPR 9 17 621.335693359375 NaN 0 621.335693359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EWRVGRWPR_ ENST00000456948.5_1_7:26241480-26241672:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88137.7 NaN 21479 5079 26553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26563 103.94 NaN 275470 35 0 24594 0.327 -1 0 72 452.9483303979006 1355.8231617939018 3 452.9482421875 MULTI HCD FTMS 0 0 0 26562 145221.0625 0.752559483357599 -6 0.07678985595703125 1 NaN NaN 2 P 1 -1 7.0116 0 0 0.51715 0 0 1135.692544583744 120.05053888492421 1255.7430834686681 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.51715 - 16 + NaN NaN 135501.8 NaN 21480 5081 26562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26564 103.95 NaN 40309 35 0 8058.2 0.261 + 10171 IFSPVFNFF 9 23 559.2898559570312 NaN 0 559.2898559570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IFSPVFNFF_ ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96291.4 NaN 21481 5081 26562 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26566 103.95 NaN 37874 35 0 4787.9 0.411 -1 WLRCQWCCRPR 11 37 559.927978515625 NaN 0 559.927978515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 3 Carbamidomethyl (C) _WLRC(Carbamidomethyl (C))QWC(Carbamidomethyl (C))C(Carbamidomethyl (C))RPR_ ENST00000298292.12_1_14:50100549-50100927:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 128037.3 NaN 21482 5082 26565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26568 103.96 NaN 263570 35 0 42820 0.411 -1 FCGPQEQHCSY 11 65 471.51697133321596 1411.529084599848 3 471.5167236328125 MULTI HCD FTMS 0 0 0 26567 75469.3203125 0.2684611799174324 -21 0.224456787109375 1 2 Carbamidomethyl (C) _FC(Carbamidomethyl (C))GPQEQHC(Carbamidomethyl (C))SY_ ENST00000478930.5_2_7:106815027-106820334:+|nuORF 1.214830529360525 0.41359283248740725 2 AES{M(Oxidation (M))|F} 4 -1 34.335 0 0 2.4324 0 0 959.3234602066408 0 959.3234602066408 0 30.355318460545185 0 0 0 0.23965182871044374 0 0 0 AES{M(Oxidation (M))|F} 2.4324 - 22 NaN NaN 163328.1 NaN 21483 5083 26567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26570 103.97 NaN 776830 35 0 224420 0.411 -1 LMCSKSCCVYF 11 60 466.52882538706655 1396.5646467613997 3 466.5288391113281 MULTI HCD FTMS 0 0 0 26569 92580.171875 0.16904728483252848 -20 0.19301605224609375 1 2 Carbamidomethyl (C) _LMCSKSC(Carbamidomethyl (C))C(Carbamidomethyl (C))VYF_ ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 12.855947597645695 0.34506811884481176 2 NPE{M(Oxidation (M))|F} 4 -1 41.23 0 0 2.9522 0 0 891.3292713849625 0 891.3292713849625 0 16.01342204748164 0 0 0 0.8494850021680094 0 0.3807196863200844 0 NPE{M(Oxidation (M))|F} 2.9522 - 38 NaN NaN 321740.8 NaN 21484 5084 26569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26572 103.97 NaN 556010 35 0 138160 0.411 + -1 EIFCFIII 8 52 527.7856625080323 1053.5567720828644 2 527.7857055664062 MULTI HCD FTMS 0 0 0 26571 231770.40625 0.6034302837402223 7 -0.05910491943359375 1 Carbamidomethyl (C) _EIFC(Carbamidomethyl (C))FIII_ REV__ENST00000417404.2_1_17:28960066-28961284:+|nuORF 32.116972079565 0.3321965280364247 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 43.047 0 0 4.0859 0 0 549.2256885855136 0 549.2256885855136 0 36.05774396488272 0 0 0 1.3494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.0859 + + 17 NaN NaN 249008.2 NaN 21485 5085 26571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26574 103.98 NaN 26836 35 0 3176 0.411 + -1 CWMGTCRQC 9 25 601.2247609504736 NaN 0 600.8195190429688 PEAK HCD FTMS 0 0 0 26573 5651.42626953125 0.3868459125346993 -3 0.0226287841796875 1 2 Carbamidomethyl (C) _CWMGTC(Carbamidomethyl (C))RQC(Carbamidomethyl (C))_ REV__ENST00000319080.7_12:122630330-122630822:+|nuORF 0.5247636613948944 0.2927039108006614 2 M 1 -1 6.9897 0 0 0.58226 0 0 636.085006664816 430.29709802799067 1066.3821046928067 0 0 0 0 0 0 0 0 0 M 0.58226 + + 1 + NaN NaN 116842.8 NaN 21486 5086 26573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26576 103.99 NaN 54121 35 0 3860.8 0.412 + 29764 VEAWPVSSL 9 43 494.26075466793765 NaN 0 494.2612609863281 PEAK HCD FTMS 0 0 0 26575 13731.4560546875 0.1599907494219811 9 -0.10256195068359375 1 Unmodified _VEAWPVSSL_ REV__ENSG00000181652|ENST00000639579|ATG9B 20.453626601364224 0.18435338882370536 2 S[VS]Y 4 -1 18.544 0 0 1.8798 0 0 131.09428982273135 416.17890344791255 547.2731932706439 0 0 0 0 0 1 0 0.9247425010840047 0 S[VS]Y 1.8798 - 11 + NaN NaN 108369.3 NaN 21487 5087 26575 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26579 104 NaN 105430 35 0 26052 0.327 + 32841 WVLWLARLP 9 30 577.3486628857712 1152.6827728383423 2 577.3482055664062 MULTI HCD FTMS 0 0 0 26578 21456.990234375 0.2675010445855406 -2 0.014556884765625 1 Unmodified _WVLWLARLP_ REV__ENSG00000167178|ENST00000453268|ISLR2;REV__ISLR2|p.P21Rfs*33|1|0.29|ENSG00000167178|chr15:74132814-74132814|C/-|frameshift_variant 2.0597508629832335 0.3354026079994024 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 117701.6 NaN 21488 5089 26578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26580 104.01 NaN 904860 35 0 83383 0.261 + 25416 SERPPTYCEL 10 83 597.7768066949734 1193.5390604567467 2 597.7766723632812 MULTI HCD FTMS 0 0 0 26578 34140.76171875 0.912824177921044 -11 0.10256195068359375 2 Unmodified _SERPPTYCEL_ ENSG00000125731|ENST00000245908|SH2D3A;ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A 56.17704186161178 0.05532499666593632 2 SE{M(Oxidation (M))|F}D[{I|L}P]N{M(Oxidation (M))|F} 8 7 85.725 0 0 7.1824 0 0 0 241.09737573795158 241.09737573795158 41.79297219607513 0 0 0 0 2.6237125054200234 0 1.0484550065040281 1.7372118693881546 SE{M(Oxidation (M))|F}D[{I|L}P]N{M(Oxidation (M))|F} 7.1824 - 4429 + NaN NaN 245816 NaN 21489 5089 26578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26581 104.01 NaN 270440 35 0 23911 0.261 + 18334 MPFYFFLL 8 53 539.2782255122661 NaN 0 539.2781372070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MPFYFFLL_ L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|255|3|anti-sense 6.354104778181461 0.38822285293237185 2 PSS 3 7 18.5 0 0 1.7185 0 0 132.04050194266534 670.3592012994749 802.3997032421403 0 0 0 0 0 0 0 0.3807196863200844 0 PSS 1.7185 - 24 + NaN NaN 136545.7 NaN 21490 5089 26578 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26583 104.02 NaN 85735 35 0 5851 0.411 + -1 GFSALLCLHD 10 45 566.7756248891815 1131.5366968451629 2 566.7750244140625 MULTI HCD FTMS 0 0 0 26582 14095.2001953125 0.4617302379348757 1 -0.0076446533203125 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 13.90604991867851 0.3810395177745597 2 SW 2 -1 31.013 0 0 2.7408 0 0 840.4131234591387 0 840.4131234591387 0 15.528871982441359 0 0 0 0.9247425010840047 0 0.3807196863200844 0 SW 2.7408 - 59 NaN NaN 123033.2 NaN 21491 5090 26582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26585 104.02 NaN 72805 35 0 6361.6 0.327 + 27709 TAQMGYSLEGN 11 39 585.7594980238774 1169.5044431145548 2 585.7596435546875 MULTI HCD FTMS 0 0 0 26584 5034.1123046875 0.10900577368279932 1 -0.00942230224609375 1 Unmodified _TAQMGYSLEGN_ REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1 3.5870582119611467 0.4031890477297048 2 {I|L} 1 -1 6.9897 0 0 0.59766 0 0 130.9892222662009 922.4113253229124 1053.4005475891133 0 0 0 0 0 0 0 0 0 {I|L} 0.59766 + + 17 + NaN NaN 95025.7 NaN 21492 5091 26584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26586 104.03 NaN 112040 35 0 11250 0.261 + 13831 KYPSPFFVF 9 34 566.2972772026928 1130.5800014721856 2 566.2970581054688 MULTI HCD FTMS 0 0 0 26584 10785.9521484375 0.15427130985505824 45 -0.47367095947265625 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 6.2057823575117 0.30397260197431997 2 V{M(Oxidation (M))|F} 2 7 19.464 0 0 1.7216 0 0 866.4361449525802 0 866.4361449525802 0 1.5051499783199063 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.7216 + + 31 NaN NaN 100158.6 NaN 21493 5091 26584 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26588 104.03 NaN 91709 35 0 54712 0.327 -1 0 24 637.3865918827356 636.3793154161356 1 637.38671875 MULTI HCD FTMS 0 0 0 26587 28971.26171875 0.7452837706320746 -5 0.04404449462890625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103592 NaN 21494 5092 26587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26589 104.04 NaN 117990 35 0 10059 0.261 -1 MYIIPVVLF 9 54 555.8167296569536 1109.6189063807071 2 555.8168334960938 MULTI HCD FTMS 0 0 0 26587 29150.572265625 0.4746692315501274 16 -0.16973114013671875 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 20.871210003555333 0.18003371494288972 2 {I|L}{M(Oxidation (M))|F} 2 -1 22.831 0 0 2.0575 0 0 831.459276267775 0 831.459276267775 0 11.861818737241734 0 0 0 0.4247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F} 2.0575 + + 24 NaN NaN 125293.9 NaN 21495 5092 26587 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26591 104.04 NaN 119150 35 0 35232 0.327 + 28575 TPVDFFFEF 9 35 574.7685592515478 1147.5225655698955 2 574.7687377929688 MULTI HCD FTMS 0 0 0 26590 74810.71875 0.29304396939343597 1 -0.0227508544921875 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 46.020951573049366 0.037705236580089195 2 [{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 4 + 57.413 0 0 5.0032 5.0032 88.228 0 0 0 2.420299789533402 57.412669627871864 2.420299789533402 11.505149978319906 0 1.9247425010840047 0 0.7742275032520141 0 [{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.0032;4.0006 -;- 96 NaN NaN 111736.4 NaN 21496 5093 26590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26592 104.05 NaN 113400 35 0 34668 0.263 -1 KKCHQCVETI 10 38 434.8822201250045 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 26590 56782.78125 0.4305290661479291 22 -0.22916412353515625 2 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98551.5 NaN 21497 5093 26590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26593 104.05 NaN 82138 35 0 9948 0.261 -1 RRLKMVVKTF 10 34 647.3937261775019 NaN 0 647.3937377929688 PEAK HCD FTMS 0 0 0 26590 27606.40625 0.7419180707551855 4 -0.0586700439453125 3 Oxidation (M) _RRLKM(Oxidation (M))VVKTF_ ENSG00000083642|ENST00000315596|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000083642|Q9NTI5-3|PDS5B;nc|ENSG00000083642|Q9NTI5-4|PDS5B 3.2813086475875832 0.33737594360511275 2 {I|L} 1 -1 5.4846 0 0 0.42425 0 0 700.41939707981 476.25596033267817 1176.6753574124882 0 0 0 0 0 0 0 0 0 {I|L} 0.42425 + + 4 + NaN NaN 106713.1 NaN 21498 5093 26590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26594 104.05 NaN 129420 35 0 20211 0.262 + 29132 TYIIDLLTF 9 53 549.807060770186 1097.599568607172 2 549.8156127929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _TYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant;nc|ENSG00000145990|Q9NXC2-2|GFOD1 47.748688679222035 0.03472022231463587 2 [YT]{I|L}{I|L}D{I|L}{I|L}T{M(Oxidation (M))|F} 9 0 + 55.185 0 0 5.0278 5.0278 88.212 0 0 0 6.869741192965066 36.42397630337753 6.869741192965066 11.249387366082999 0 1.6822333069283655 1.5228787452803376 0 0 + + [YT]{I|L}{I|L}D{I|L}{I|L}T{M(Oxidation (M))|F};[{I|L}T]Y{I|L}D{I|L}{I|L}T{M(Oxidation (M))|F};[YT]{I|L}{I|L}D{I|L}[{M(Oxidation (M))|F}T]{I|L};[{I|L}T]Y{I|L}D{I|L}[{M(Oxidation (M))|F}T]{I|L} 5.0278;4.0029;2.7035;1.6786 +;-;-;- + 112 NaN NaN 113792.9 NaN 21499 5093 26590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26595 104.06 NaN 75477 35 0 9590.8 0.261 + 30814 VPVNNPLRVI 10 30 560.8471069335938 NaN 0 560.8471069335938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _VPVNNPLRVI_ REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF 5.731851221503515 0.33527861879838866 2 R 1 -1 16.237 0 0 1.4502 0 0 440.29867890449356 520.2532657552041 960.5519446596977 0 0 0 0 0 0.9247425010840047 0 0 0 R 1.4502 + + 6 + NaN NaN 108620.5 NaN 21500 5093 26590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26596 104.06 NaN 109850 35 0 19425 0.261 -1 0 36 504.1045197330703 503.0972432664703 1 505.1044921875 MULTI HCD FTMS 0 0 0 26590 17561.720703125 0.648308105371758 4 -0.0586700439453125 6 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100818.3 NaN 21501 5093 26590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26599 104.07 NaN 205850 35 0 23739 0.327 -1 0 68 452.9483303979006 1355.8231617939018 3 452.9483642578125 MULTI HCD FTMS 0 0 0 26598 49577.00390625 0.25691620625696204 8 -0.074432373046875 1 NaN NaN 2 P 1 -1 5.4846 0 0 0.40452 0 0 1135.6922546667518 120.0503176324828 1255.7425722992346 0 0 0 0 0 0 0 0 0 P 0.40452 - 16 + NaN NaN 122375 NaN 21502 5095 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26600 104.08 NaN 51767 35 0 7212.3 0.261 -1 MVVTRNVF 8 30 491.2620319492697 NaN 0 491.2616882324219 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))VVTRNVF_ ENSG00000276293|ENST00000619039|PIP4K2B;nc|ENSG00000276293|P78356-2|PIP4K2B 2.577480529830294 0.38822285293237185 2 N 1 -1 1.5938 0 0 0.16255 0 0 508.30435457061134 355.1391695611938 863.4435241318051 0 0 0 0 0 0 0 0 0 N 0.16255 + + 1 + NaN NaN 112976.1 NaN 21503 5095 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26601 104.08 NaN 50166 35 0 6793.3 0.261 + 20397 NYVKANYLPY 10 35 622.818359375 NaN 0 622.818359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 9.38312468134398 0.33215363477037435 2 {I|L} 1 9 16.237 0 0 1.3067 0 0 852.4304970873939 274.0827730768188 1126.5132701642126 0 0 0 0 0 0.9247425010840047 0 0 0 + {I|L} 1.3067 + + 2 + NaN NaN 91312.6 NaN 21504 5095 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26602 104.08 NaN 40304 35 0 9451.6 0.261 + -1 PLQCSDSCVLS 11 25 604.7686638015316 NaN 0 604.5543823242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _PLQC(Carbamidomethyl (C))SDSCVLS_ REV__ENST00000497071.1_1_22:37593712-37595416:-|nuORF 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105579.6 NaN 21505 5095 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26603 104.09 NaN 73251 35 0 13756 0.261 -1 QLCIFCCC 8 33 601.7252807617188 NaN 0 601.7252807617188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Acetyl (Protein N-term),4 Carbamidomethyl (C) _(Acetyl (Protein N-term))QLC(Carbamidomethyl (C))IFC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))_ nc|ENSG00000164199|Q8WXG9-2|ADGRV1 0.7936320650641473 0.38822285293237185 2 T{M(Oxidation (M))|F} 2 -1 5.5732 0 0 0.46427 0 0 627.1516272443374 322.13996301822505 949.2915902625625 0 0 0 0 0 0 0 0 0 T{M(Oxidation (M))|F} 0.46427 - 4 + NaN NaN 115887.4 NaN 21506 5095 26598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26605 104.09 NaN 513130 35 0 100610 0.327 -1 0 59 471.51697133321596 1411.529084599848 3 471.5171813964844 MULTI HCD FTMS 0 0 0 26604 122025.6640625 0.4340724630721376 -8 0.095001220703125 1 NaN NaN 2 ES{M(Oxidation (M))|F} 3 -1 20.177 0 0 1.4295 0 0 1030.3775822060982 0 1030.3775822060982 0 7.958800173440748 0 0 0 0 0 0 0 ES{M(Oxidation (M))|F} 1.4295 - 18 NaN NaN 162813.1 NaN 21507 5096 26604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26606 104.1 NaN 98851 35 0 7573.2 0.261 + 32402 VYYGSLGLWL 10 43 585.8131565677596 1169.6117602023191 2 585.8135986328125 MULTI HCD FTMS 0 0 0 26604 38631.046875 0.3277528621191712 -31 0.308563232421875 2 Unmodified _VYYGSLGLWL_ ENSG00000204070|ENST00000243918|SYS1;ENST00000461890.1_1_20:43991814-43994327:+|nuORF;nc|ENSG00000204070|Q8N2H4-2|SYS1 3.944395688203298 0.4544253912184634 2 {I|L}{I|L} 2 8 20.969 0 0 1.7928 0 0 925.4280357741329 0 925.4280357741329 0 7.781512503836437 0 0 0 0 0 0 0 {I|L}{I|L} 1.7928 - 17 NaN NaN 127705.3 NaN 21508 5096 26604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26608 104.1 NaN 520770 35 0 151510 0.327 + 20736 PFYYQVYCDAE 11 42 466.52882538706655 1396.5646467613997 3 466.5288391113281 MULTI HCD FTMS 0 0 0 26607 287740.375 0.5254011538898276 -7 0.08521270751953125 1 Unmodified _PFYYQVYCDAE_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 4.11662792887243 0.40086653484894175 2 PE 2 -1 25.217 0 0 1.8056 0 0 1152.4424777896322 0 1152.4424777896322 0 3.226825097560422 0 0 0 0.4247425010840047 0 0 0 PE 1.8056 - 6 NaN NaN 179001.9 NaN 21509 5097 26607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26609 104.1 NaN 120770 35 0 21833 0.261 + 34152 YPCILYGIL 9 34 527.7856625080323 1053.5567720828644 2 527.7857055664062 MULTI HCD FTMS 0 0 0 26607 116103.1171875 0.30228249620448433 19 -0.17961883544921875 2 Unmodified _YPCILYGIL_ ENSG00000218819|ENST00000405799|TDRD15 9.347437153973935 0.2795965555214564 2 {I|L}{I|L} 2 7 25.969 0 0 2.4649 0 0 809.3762445557703 0 809.3762445557703 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.4649 + + 7 NaN NaN 108079.5 NaN 21510 5097 26607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26611 104.11 NaN 21538 35 0 3328.7 0.411 -1 0 27 632.4923095703125 NaN 0 632.4923095703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117502.5 NaN 21511 5098 26610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26614 104.12 NaN 768290 35 0 60460 0.412 + 25417 SERPPTYCEL 10 91 597.7768066949734 1193.5390604567467 2 598.2785034179688 MULTI HCD FTMS 0 0 0 26613 30137.5234375 0.9196451825885003 6 -0.0550537109375 1 Unmodified _SERPPTYCEL_ ENSG00000125731|ENST00000245908|SH2D3A;ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A 47.748688679222035 0.08597705450879027 2 SE{M(Oxidation (M))|F}D[{I|L}P]{M(Oxidation (M))|F}N 8 7 83.713 0 0 7.0138 0 0 0 241.0975741022094 241.0975741022094 35.947413515953585 0 0 0 0 2.579689690656103 0 1.079689690656103 1.3754223615525998 SE{M(Oxidation (M))|F}D[{I|L}P]{M(Oxidation (M))|F}N 7.0138 - 5235 + NaN NaN 321252.4 NaN 21512 5100 26613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26616 104.13 NaN 166480 35 0 27856 0.411 + 18380 MPPSISVFQA 10 52 538.7769269038073 NaN 0 538.7761840820312 PEAK HCD FTMS 0 0 0 26615 17724.734375 0.2191711770126486 8 -0.077850341796875 1 Unmodified _MPPSISVFQA_ ADORA1|p.A7V|1|0.19|ENSG00000163485|chr1:203128861-203128861|C/T|missense_variant 2.735195868890462 0.33784334045437464 2 P 1 9 6.9897 0 0 0.64988 0 0 131.0375871627063 844.4207308641953 975.4583180269017 0 0 0 0 0 0 0 0 0 + P 0.64988 + + 2 + NaN NaN 141707 NaN 21513 5101 26615 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26620 104.15 NaN 129810 35 0 14213 0.412 + 13832 KYPSPFFVF 9 63 566.2974956204355 1130.5804383076709 2 566.2974243164062 MULTI HCD FTMS 0 0 0 26619 35035.9375 0.7973396173210768 -5 0.0354156494140625 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.90604991867851 0.24021115267848145 2 V{M(Oxidation (M))|F} 2 7 26.599 0 0 2.3527 0 0 866.4315659675675 0 866.4315659675675 0 8.63982988912431 0 0 0 0.7134679910804405 0 0 0 + V{M(Oxidation (M))|F} 2.3527 + + 137 NaN NaN 140548.3 NaN 21514 5104 26619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26622 104.16 NaN 240900 35 0 71853 0.327 + 28576 TPVDFFFEF 9 48 574.7685592515478 1147.5225655698955 2 574.7686767578125 MULTI HCD FTMS 0 0 0 26621 136024.90625 0.5328284386235762 13 -0.13564300537109375 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 68.08070601005525 0.009709267492204555 2 [{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 9 4 + 61.137 0 0 5.3277 5.3277 89.133 0 0 0 0.03469351593508918 51.07509072285026 0.03469351593508918 12.825834421237516 0 1.9247425010840047 0 1.079689690656103 0 [{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E][VP]S{M(Oxidation (M))|F}E{M(Oxidation (M))|F}{M(Oxidation (M))|F} 5.3277;4.21 -;- 270 NaN NaN 138848.6 NaN 21515 5105 26621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26623 104.16 NaN 168520 35 0 22630 0.261 + 29894 VFDLQWLEL 9 46 581.8109276028949 NaN 0 581.8108520507812 PEAK HCD FTMS 0 0 0 26621 60917.4609375 0.361373040841264 -12 0.118377685546875 2 Unmodified _VFDLQWLEL_ ENSG00000015133|ENST00000389857|CCDC88C 32.037481411007896 0.10660006546273454 2 E{I|L}WQ{I|L} 5 6 41.058 0 0 3.5346 0 0 131.0947964192522 358.13657556705317 489.23137198630536 0 0 0 0 0 1.8494850021680094 0 0 0 E{I|L}WQ{I|L} 3.5346 - 72 + NaN NaN 123919.9 NaN 21516 5105 26621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26624 104.17 NaN 197050 35 0 41080 0.261 + 2188 DIFTLCALFF 10 38 595.299777330062 NaN 0 595.2838134765625 PEAK HCD FTMS 0 0 0 26621 13157.548828125 0.44680349822685733 1 -0.01930999755859375 3 Unmodified _DIFTLCALFF_ REV__OR4A5|p.S65T|1|0.34|ENSG00000221840|chr11:54707077-54707077|T/A|missense_variant 6.723162845929126 0.3344301934401713 2 {M(Oxidation (M))|F}{I|L} 2 -1 14.464 0 0 1.2169 0 0 165.11078563041434 760.3306368463499 925.4414224767643 0 0 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F}{I|L} 1.2169 - 6 + NaN NaN 133503.2 NaN 21517 5105 26621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26625 104.17 NaN 63340 35 0 15848 0.262 + 16699 LWYTPAPN 8 31 481.2411722995547 NaN 0 481.3365478515625 PEAK HCD FTMS 0 0 0 26621 9802.3515625 0.36999381181640806 -11 0.0956268310546875 4 Unmodified _LWYTPAPN_ ENST00000527304.1_1_11:65380411-65381302:-|nuORF 0.7936320650641473 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 2.4743 0 0 0.25761 0 0 575.6291208668845 234.7526796930297 810.3818005599142 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.25761 - 4 + NaN NaN 112986.5 NaN 21518 5105 26621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26626 104.17 NaN 52025 35 0 6122.1 0.261 -1 PMSEYKLPAC 10 30 606.2754513261181 NaN 0 606.2980346679688 PEAK HCD FTMS 0 0 0 26621 5479.39501953125 0.6672749866269109 -1 0.007354736328125 5 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))SEYKLPAC(Carbamidomethyl (C))_ LYST|p.L2496P|1|0.24|ENSG00000143669|chr1:235752145-235752145|A/G|missense_variant 1.6526216038709556 0.33876987398426067 2 K 1 -1 6.9897 0 0 0.57741 0 0 623.2363752090736 456.18903528385005 1079.4254104929237 0 0 0 0 0 0 0 0 0 K 0.57741 + + 1 + NaN NaN 102082.4 NaN 21519 5105 26621 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26628 104.18 NaN 277000 35 0 31809 0.326 + 20884 PIRTLGMRLP 10 55 577.3488385284976 NaN 0 577.3489379882812 PEAK HCD FTMS 0 0 0 26627 53889.8125 0.4702959131773475 2 -0.0225677490234375 1 Unmodified _PIRTLGMRLP_ REV__ENST00000368073.7_1_1:160231975-160232104:-|nuORF 6.2057823575117 0.3348729994311477 2 {I|L}R 2 -1 6.4537 0 0 0.55988 0 0 166.1606154341451 714.3183077447874 880.4789231789325 0 0 0 0 0 0 0 0 0 {I|L}R 0.55988 + + 10 + NaN NaN 127190.7 NaN 21520 5106 26627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26629 104.18 NaN 98523 35 0 18144 0.261 + 26967 SYLLEPWFL 9 35 584.3076334817081 1166.600714030216 2 584.3080444335938 MULTI HCD FTMS 0 0 0 26627 94590.7578125 0.4556653816958078 -11 0.1077423095703125 2 Unmodified _SYLLEPWFL_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 21.74664581756881 0.17247014374749275 2 E[C(Carbamidomethyl (C))K]G{I|L} 5 7 31.466 0 0 2.6972 0 0 561.2950468091154 0 561.2950468091154 0 20.496812376923046 0 0 0 0.9247425010840047 0 0 0 E[C(Carbamidomethyl (C))K]G{I|L} 2.6972 - 28 NaN NaN 126430.2 NaN 21521 5106 26627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26630 104.19 NaN 54227 35 0 13058 0.261 -1 KEVQLYKK 8 23 539.32060227542 NaN 0 539.3208618164062 PEAK HCD FTMS 0 0 0 26627 20973.8984375 0.7186858291485536 1 -0.0129547119140625 3 Acetyl (Protein N-term) _(Acetyl (Protein N-term))KEVQLYKK_ ENST00000590432.5_1_17:33915683-33915716:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112063.9 NaN 21522 5106 26627 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26632 104.19 NaN 54318 35 0 5448.1 0.327 + 3534 EILSYITLF 9 34 549.807060770186 1097.599568607172 2 549.8074340820312 MULTI HCD FTMS 0 0 0 26631 10146.517578125 0.17430992787585442 -1 0.0129547119140625 1 Unmodified _EILSYITLF_ REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1 10.823927491677226 0.26684000660059787 2 {I|L}[{I|L}T]{M(Oxidation (M))|F} 4 -1 21.198 0 0 1.9313 0 0 605.3072376935562 0 605.3072376935562 0 21.197887582883936 0 0 0 0.5 0 0 0 {I|L}[{I|L}T]{M(Oxidation (M))|F} 1.9313 + + 5 NaN NaN 95827.7 NaN 21523 5107 26631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26633 104.2 NaN 56291 35 0 6182 0.261 -1 FDTKIMKNC 9 28 586.7763806339458 NaN 0 586.7759399414062 PEAK HCD FTMS 0 0 0 26631 10121.1279296875 0.3771376397813512 -1 0.0129547119140625 2 Carbamidomethyl (C),Oxidation (M) _FDTKIM(Oxidation (M))KNC(Carbamidomethyl (C))_ ENSG00000130270|ENST00000310127|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF;ENST00000533107.3_1_19:1799652-1806029:-|nuORF;nc|ENSG00000130270|O60423-1|ATP8B3;nc|ENSG00000130270|O60423-3|ATP8B3 1.6526216038709556 0.28723846860855273 2 {I|L} 1 -1 6.9897 0 0 0.59663 0 0 132.0201004374772 923.4102595851843 1055.4303600226615 0 0 0 0 0 0 0 0 0 {I|L} 0.59663 + + 2 + NaN NaN 100849.6 NaN 21524 5107 26631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26635 104.2 NaN 239910 35 0 19863 0.411 -1 MYIIPVVLF 9 72 555.8167172742493 1109.6188816152985 2 555.8174438476562 MULTI HCD FTMS 0 0 0 26634 12628.6103515625 0.1447460410828708 4 -0.045989990234375 1 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 28.173230860318316 0.11963627304438548 2 V{I|L}{M(Oxidation (M))|F} 3 -1 23.984 0 0 2.1615 0 0 732.3854954128268 0 732.3854954128268 0 13.015384402724592 0 0 0 0.3807196863200844 0 0 0 V{I|L}{M(Oxidation (M))|F} 2.1615 + + 161 NaN NaN 154892.3 NaN 21525 5108 26634 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26637 104.21 NaN 296270 35 0 49982 0.327 -1 0 46 471.51697133321596 1411.529084599848 3 471.5169677734375 MULTI HCD FTMS 0 0 0 26636 137776.6875 0.49010236130666573 5 -0.054901123046875 1 NaN NaN 2 ES{M(Oxidation (M))|F} 3 -1 20.177 0 0 1.4295 0 0 1030.3743733543263 0 1030.3743733543263 0 16.197887582883936 0 0 0 0 0 0 0 ES{M(Oxidation (M))|F} 1.4295 - 8 NaN NaN 137589.1 NaN 21526 5109 26636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26638 104.21 NaN 161840 35 0 11983 0.261 + -1 GFSALLCLHD 10 50 566.7756248891815 1131.5366968451629 2 566.7740478515625 MULTI HCD FTMS 0 0 0 26636 13250.5771484375 0.43406209594363476 20 -0.212982177734375 2 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.42334543440173333 2 SW 2 -1 27.206 0 0 2.4044 0 0 840.4160436242629 0 840.4160436242629 0 7.742275032520141 0 0 0 0.9247425010840047 0 0 0 SW 2.4044 - 61 + NaN NaN 115621.9 NaN 21527 5109 26636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26640 104.22 NaN 271550 35 0 72846 0.327 + 20737 PFYYQVYCDAE 11 35 466.52882538706655 1396.5646467613997 3 466.5289001464844 MULTI HCD FTMS 0 0 0 26639 124105.2734375 0.2266107210984036 6 -0.061065673828125 1 Unmodified _PFYYQVYCDAE_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 4.11662792887243 0.40086653484894175 2 PE 2 -1 25.217 0 0 1.8056 0 0 1152.442425847642 0 1152.442425847642 0 4.247425010840047 0 0 0 0.4247425010840047 0 0 0 PE 1.8056 - 5 NaN NaN 146345.5 NaN 21528 5110 26639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26641 104.22 NaN 99037 35 0 16667 0.261 -1 0 44 452.9483303979006 1355.8231617939018 3 452.9485168457031 MULTI HCD FTMS 0 0 0 26639 56065.33203125 0.29053979210288283 23 -0.24758148193359375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118796.6 NaN 21529 5110 26639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26642 104.23 NaN 30971 35 0 6645.6 0.261 -1 RYYNKQCVL 9 29 622.31640625 NaN 0 622.31640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _RYYNKQC(Carbamidomethyl (C))VL_ KCNF1|p.R417C|1|0.19|ENSG00000162975|chr2:10913675-10913675|C/T|missense_variant 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103093.4 NaN 21530 5110 26639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26643 104.23 NaN 24066 35 0 3115.8 0.261 -1 TKELQKAGIMF 11 22 641.3487548828125 NaN 0 641.3487548828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _TKELQKAGIM(Oxidation (M))F_ chr1:200598421-200600050|482|14.5|0.62|4.54|-|0|KIF14,KIF14|1;ENSG00000118193|ENST00000367350|KIF14 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104945.6 NaN 21531 5110 26639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26644 104.23 NaN 135870 35 0 20947 0.261 + 33898 YLNVDRKLKK 10 43 638.8896484375 NaN 0 638.8896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _YLNVDRKLKK_ ENSG00000105479|ENST00000674294|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF;nc|ENSG00000105479|Q96M63-5|ODAD1;nc|ENSG00000105479|Q96M63|ODAD1 1.4819007175156935 0.33891598740166873 2 R 1 9 3.9794 0 0 0.31217 0 0 603.2873719708999 512.3534542539942 1115.6408262248942 0 0 0 0 0 0 0 0 0 + R 0.31217 + + 5 + NaN NaN 114895 NaN 21532 5110 26639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26646 104.24 NaN 347130 35 0 63045 0.327 + -1 EIFCFIII 8 35 527.7856625080323 1053.5567720828644 2 527.7857666015625 MULTI HCD FTMS 0 0 0 26645 55231.5078125 0.14379905083631522 33 -0.33229827880859375 1 Carbamidomethyl (C) _EIFC(Carbamidomethyl (C))FIII_ REV__ENST00000417404.2_1_17:28960066-28961284:+|nuORF 24.67388899826682 0.4122521268485776 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 -1 39.575 0 0 3.7563 0 0 549.225877830275 0 549.225877830275 0 39.574528797331574 0 0 0 1.1861818737241734 0 0 0 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.7563 + + 12 NaN NaN 138089.5 NaN 21533 5111 26645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26647 104.24 NaN 52295 35 0 9925.4 0.261 + 23748 RREQVSSEL 9 30 552.2931755437336 NaN 0 552.2923583984375 PEAK HCD FTMS 0 0 0 26645 22804.642578125 0.523930750182721 -19 0.20610809326171875 2 Unmodified _RREQVSSEL_ REV__ENST00000462445.1_1_10:70847907-70863646:+|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95232.2 NaN 21534 5111 26645 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26649 104.25 NaN 276700 35 0 48602 0.327 -1 0 44 471.51697133321596 1411.529084599848 3 471.5168762207031 MULTI HCD FTMS 0 0 0 26648 27362.1484375 0.09733325574141304 8 -0.07068634033203125 1 NaN NaN 2 ES{M(Oxidation (M))|F} 3 -1 26.198 0 0 1.856 0 0 1030.3786373559421 0 1030.3786373559421 0 22.21848749616356 0 0 0 0 0 0 0 ES{M(Oxidation (M))|F} 1.856 - 6 NaN NaN 128477.4 NaN 21535 5112 26648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26650 104.25 NaN 114820 35 0 12117 0.261 + 31210 VVNLQYSEVQ 10 46 589.8081665039062 NaN 0 589.8081665039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VVNLQYSEVQ_ ENSG00000119801|ENST00000261353|YPEL5 3.5964929083625545 0.337106189561315 2 {M(Oxidation (M))|F}D 2 10 9.464 0 0 0.80436 0 0 198.12224003730609 713.3491405950033 911.4713806323093 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F}D 0.80436 - 30 + NaN NaN 115487.4 NaN 21536 5112 26648 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26654 104.27 NaN 372640 35 0 69110 0.327 + 15841 LPIVDVAEALL 11 55 576.8474533025798 1151.6803536719594 2 576.8475341796875 MULTI HCD FTMS 0 0 0 26653 15985.013671875 0.10392257772549689 -11 0.11814117431640625 1 Unmodified _LPIVDVAEALL_ ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2 24.990960013464015 0.23933535780272686 2 AEA{I|L}{I|L} 5 6 48.87 0 0 4.2434 0 0 636.3848744123062 0 636.3848744123062 0 29.829022044314467 0 0 0 1.392159058960253 0 0 0 + AEA{I|L}{I|L} 4.2434 + + 52 NaN NaN 138610.1 NaN 21537 5115 26653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26655 104.28 NaN 113670 35 0 9609.2 0.261 + 13833 KYPSPFFVF 9 52 566.2974956204355 1130.5804383076709 2 566.2979736328125 MULTI HCD FTMS 0 0 0 26653 17166.984375 0.3906821888844677 6 -0.05425262451171875 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 17.11289562659939 0.2125047172822487 2 V{M(Oxidation (M))|F} 2 7 23.711 0 0 2.0973 0 0 866.4317172501324 0 866.4317172501324 0 13.253800256993953 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.0973 + + 22 NaN NaN 104973.6 NaN 21538 5115 26653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26657 104.28 NaN 56184 35 0 4801.2 0.411 -1 MLPHVVLTF 9 49 549.8069146844281 NaN 0 549.8076171875 PEAK HCD FTMS 0 0 0 26656 4663.1630859375 0.07954918697244769 -3 0.02263641357421875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MLPHVVLTF_ ENSG00000176715|ENST00000614302|ACSF3 16.942295170755138 0.2079222001251384 2 T{I|L} 2 -1 22.351 0 0 2.0364 0 0 165.07774430850606 715.3657508391215 880.4434951476276 0 0 0 0 0 1.1382104921644451 0 0 0 T{I|L} 2.0364 - 4 + NaN NaN 129632.7 NaN 21539 5116 26656 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26659 104.29 NaN 105420 35 0 24647 0.412 + 28577 TPVDFFFEF 9 52 574.7685592515478 1147.5225655698955 2 574.7698974609375 MULTI HCD FTMS 0 0 0 26658 71927.0390625 0.2817481957903489 25 -0.26700592041015625 1 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 32.30548876998284 0.10066689432505688 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 5 45.037 0 0 3.9247 0 0 559.2632404739956 0 559.2632404739956 0 34.095019080956064 0 0 0 1.5 0 0.5 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3.9247 + + 93 + NaN NaN 121741.1 NaN 21540 5117 26658 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26661 104.3 NaN 96778 35 0 9058.7 0.327 + 31732 VYLLFHEEI 9 39 581.8109276028949 NaN 0 581.81103515625 PEAK HCD FTMS 0 0 0 26660 58127.35546875 0.3448216468403799 1 -0.015777587890625 1 Unmodified _VYLLFHEEI_ tr|U7SMV6|U7SMV6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01844PE=4SV=1 20.453626601364224 0.18435338882370536 2 E{I|L}W 3 8 29.693 0 0 2.5562 0 0 131.0956748052384 599.28356682077 730.3792416260085 0 0 0 0 0 1.3494850021680094 0 0 0 E{I|L}W 2.5562 - 72 + NaN NaN 109781.7 NaN 21541 5118 26660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26662 104.3 NaN 363490 35 0 95101 0.261 + 8028 GGGPPPGG 8 56 595.2840603292797 594.2767838626796 1 595.28369140625 MULTI HCD FTMS 0 0 0 26660 22572.99609375 0.22322792469529804 -8 0.0767974853515625 2 Unmodified _GGGPPPGG_ REV__ENSG00000091622|ENST00000262483|PITPNM3;REV__nc|ENSG00000091622|Q9BZ71-3|PITPNM3 0.7936320650641473 0.540814922690045 2 A{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 4 -1 9.2082 0 0 1.5495 0 0 98.01006425695353 0 98.01006425695353 0 9.20818753952375 0 0 0 0 0 0 0 A{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.5495 - 12 + NaN NaN 142622.7 NaN 21542 5118 26660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26663 104.3 NaN 75810 35 0 19545 0.261 + 28578 TPVDFFFEF 9 36 574.7685592515478 1147.5225655698955 2 574.7684326171875 MULTI HCD FTMS 0 0 0 26660 32846.21875 0.12866319804025544 26 -0.27490997314453125 3 Unmodified _TPVDFFFEF_ ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENST00000568912.1_1_15:34787807-34788098:+|nuORF 30.636539890814138 0.10832830463492794 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 4 5 45.165 0 0 3.9359 0 0 559.2648884232143 0 559.2648884232143 0 42.69077524932108 0 0 0 1.774227503252014 0 0.5 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}E{M(Oxidation (M))|F} 3.9359 + + 54 + NaN NaN 108070.9 NaN 21543 5118 26660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26664 104.31 NaN 113070 35 0 21159 0.263 + 31848 VYMKATDDLFY 11 41 455.8847931602593 1364.6325500809778 3 456.2193908691406 MULTI HCD FTMS 0 0 0 26660 4977.91015625 0.0450846165526554 -9 0.08623504638671875 4 Unmodified _VYMKATDDLFY_ REV__ENSG00000140284|ENST00000267842|SLC27A2;REV__nc|ENSG00000140284|O14975-2|SLC27A2 2.2527281973983926 0.4090409658946738 2 VY 2 -1 45.217 0 0 3.3135 0 0 0 1099.4764925204804 1099.4764925204804 39.73197507588033 0 0 0 0 0.4247425010840047 2 0 0 VY 3.3135 + + 8 + NaN NaN 115815 NaN 21544 5118 26660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26668 104.32 NaN 235310 35 0 55247 0.326 + 26968 SYLLEPWFL 9 48 584.3076334817081 1166.600714030216 2 584.3079223632812 MULTI HCD FTMS 0 0 0 26667 80067.8359375 0.3857051351289305 4 -0.04241180419921875 1 Unmodified _SYLLEPWFL_ ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4 34.10243960390752 0.09241788333544565 2 G{M(Oxidation (M))|F}[QP]E[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 9 5 31.628 0 0 2.7112 0 0 132.10383288360168 0 132.10383288360168 0 31.628487329057155 0 0 0 1.5 0 0.3494850021680094 0 G{M(Oxidation (M))|F}[QP]E[TP]{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 2.7112 - 110 + NaN NaN 134222.7 NaN 21545 5121 26667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26669 104.33 NaN 51648 35 0 5352.3 0.261 + 29133 TYIIDLLTF 9 30 549.8069146844281 NaN 0 549.8069458007812 PEAK HCD FTMS 0 0 0 26667 35343.0859375 0.6029198849819417 1 -0.01245880126953125 2 Unmodified _TYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;GFOD1|p.V176M|1|0.65|ENSG00000145990|chr6:13365390-13365390|C/T|missense_variant;nc|ENSG00000145990|Q9NXC2-2|GFOD1 10.073929032068715 0.24642998803896465 2 T{I|L} 2 7 15.217 0 0 1.3863 0 0 165.0630348358498 715.3651342819462 880.428169117796 0 0 0 0 0 0.4247425010840047 0 0 0 T{I|L} 1.3863 - 4 + NaN NaN 103099.6 NaN 21546 5121 26667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26670 104.33 NaN 122620 35 0 10367 0.261 + -1 SDLCDWEEQSF 11 50 472.519148750132 1414.535616850596 3 472.519775390625 MULTI HCD FTMS 0 0 0 26667 5885.9580078125 0.034864526980625865 17 -0.1934356689453125 3 Carbamidomethyl (C) _SDLC(Carbamidomethyl (C))DWEEQSF_ REV__ENSG00000171827|ENST00000330173|ZNF570 2.2527281973983926 0.4090409658946738 2 S{M(Oxidation (M))|F} 2 -1 27.717 0 0 1.9594 0 0 1162.4254707274667 0 1162.4254707274667 0 25.24227503252014 0 0 0 0.25 0 0.4247425010840047 0 S{M(Oxidation (M))|F} 1.9594 + + 10 NaN NaN 117478.2 NaN 21547 5121 26667 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26672 104.34 NaN 95815 35 0 15838 0.327 -1 0 29 528.410627314049 527.4033508474489 1 528.410400390625 MULTI HCD FTMS 0 0 0 26671 33702.08984375 0.21764824803419353 -5 0.050079345703125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99620.3 NaN 21548 5122 26671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26673 104.34 NaN 55856 35 0 5792.5 0.261 -1 HCLHVHLPC 9 34 586.776312326554 NaN 0 586.7755126953125 PEAK HCD FTMS 0 0 0 26671 15160.177734375 0.6410641385330867 4 -0.03936004638671875 2 2 Carbamidomethyl (C) _HC(Carbamidomethyl (C))LHVHLPC(Carbamidomethyl (C))_ nc|ENSG00000185379|O75771-7|RAD51D 2.302733041254933 0.2840881193086663 2 {I|L} 1 -1 5.4846 0 0 0.46815 0 0 132.02109507783308 923.4150484674436 1055.4361435452768 0 0 0 0 0 0 0 0 0 {I|L} 0.46815 + + 3 + NaN NaN 114385.2 NaN 21549 5122 26671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26674 104.35 NaN 47344 35 0 9019 0.261 + 30368 VLIQANDLKID 11 25 621.3567426533527 NaN 0 621.3571166992188 PEAK HCD FTMS 0 0 0 26671 6400.83154296875 0.24088443481430427 -2 0.01894378662109375 3 Unmodified _VLIQANDLKID_ ENSG00000067842|ENST00000263519|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3 1.0714618166137932 0.3390807148598227 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 121362.1 NaN 21550 5122 26671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26676 104.35 NaN 328380 35 0 69259 0.411 + 20738 PFYYQVYCDAE 11 55 466.52882538706655 1396.5646467613997 3 466.863037109375 MULTI HCD FTMS 0 0 0 26675 44970.83203125 0.13001563593765755 19 -0.20404815673828125 1 Unmodified _PFYYQVYCDAE_ REV__ENSG00000168014|ENST00000334126|C2CD3;REV__nc|ENSG00000168014|Q4AC94-1|C2CD3;REV__nc|ENSG00000168014|Q4AC94-2|C2CD3;REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__nc|ENSG00000168014|Q4AC94-4|C2CD3 4.11662792887243 0.40086653484894175 2 {M(Oxidation (M))|F}E 2 -1 25.217 0 0 1.8056 0 0 1102.4274860708822 0 1102.4274860708822 0 5.752574989159953 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}E 1.8056 - 10 NaN NaN 190811.6 NaN 21551 5123 26675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26678 104.36 NaN 27386 35 0 3501.9 0.326 -1 0 24 548.4894409179688 NaN 0 548.4894409179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100242.4 NaN 21552 5124 26677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26679 104.36 NaN 75860 35 0 9033.9 0.261 + 25346 SDSILRQRE 9 41 552.2931755437336 NaN 0 552.305908203125 PEAK HCD FTMS 0 0 0 26677 37908.8203125 0.8709453172452711 -6 0.06241607666015625 2 Unmodified _SDSILRQRE_ REV__ZC3H13|p.E1360Q|1|0.93|ENSG00000123200|chr13:45967747-45967747|C/G|missense_variant 2.0597508629832335 0.2852655770354268 2 N 1 -1 5.4846 0 0 0.49743 0 0 55.68600821461707 929.8145235650999 985.500531779717 0 0 0 0 0 0 0 0 0 N 0.49743 - 2 + NaN NaN 106910.2 NaN 21553 5124 26677 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26681 104.37 NaN 115280 35 0 33819 0.327 -1 KKCHQCVETI 10 38 434.8822201250045 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 26680 86962.2734375 0.6593510488383788 54 -0.528900146484375 1 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106782.4 NaN 21554 5125 26680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26682 104.37 NaN 91099 35 0 13524 0.261 -1 0 42 539.3024726776159 1076.5903924220318 2 539.3026733398438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102508.6 NaN 21555 5125 26680 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26684 104.38 NaN 39153 35 0 4950.9 0.326 + 13644 KYPENFFLL 9 27 585.8131565677596 1169.6117602023191 2 585.8135375976562 MULTI HCD FTMS 0 0 0 26683 17557.576171875 0.14896168516549924 -1 0.00940704345703125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 5.296884461304476 0.3108627248283497 2 {I|L}{I|L} 2 7 20.969 0 0 1.7928 0 0 925.435838767775 0 925.435838767775 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}{I|L} 1.7928 + + 3 NaN NaN 100359.8 NaN 21556 5126 26683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26685 104.38 NaN 59058 35 0 9266.1 0.261 -1 SSLVLLLCLTC 11 23 639.84521484375 NaN 0 639.84521484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.3258605322397891 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92313.1 NaN 21557 5126 26683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26688 104.39 NaN 371290 35 0 38345 0.327 + 19517 NRNLTMFYV 9 45 579.2930877824456 NaN 0 579.3052368164062 PEAK HCD FTMS 0 0 0 26687 24261.3828125 0.8171038208519468 18 -0.20348358154296875 1 Unmodified _NRNLTMFYV_ REV__ENSG00000141503|ENST00000355280|MINK1;REV__nc|ENSG00000141503|Q8N4C8-2|MINK1;REV__nc|ENSG00000141503|Q8N4C8-3|MINK1;REV__nc|ENSG00000141503|Q8N4C8-4|MINK1;REV__nc|ENSG00000141503|Q8N4C8-5|MINK1 7.289230182591677 0.2599242500475609 2 SY{I|L} 3 -1 16.198 0 0 1.4005 0 0 165.05931288011737 625.3137911432249 790.3731040233422 0 0 0 0 0 0 0 0 0 SY{I|L} 1.4005 - 31 + NaN NaN 149789.1 NaN 21558 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26689 104.4 NaN 58910 35 0 7528.3 0.261 -1 MYIIPVVLF 9 29 555.8175228292483 NaN 0 555.8170166015625 PEAK HCD FTMS 0 0 0 26687 24624.0234375 0.2767255293639204 1 -0.02904510498046875 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 14.581692164780916 0.22376707489839515 2 V{I|L} 2 -1 15.969 0 0 1.4391 0 0 66.02400942627158 828.4412325494749 894.4652419757465 0 0 0 0 0 0.5 0 0 0 V{I|L} 1.4391 + + 3 + NaN NaN 102010.3 NaN 21559 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26690 104.4 NaN 158020 35 0 9385.9 0.262 + 29026 TYEVFQKYFQ 10 49 451.5557868352523 1351.645531105957 3 451.5559387207031 MULTI HCD FTMS 0 0 0 26687 27353.390625 0.4846149534068535 1 -0.02904510498046875 3 Unmodified _TYEVFQKYFQ_ REV__ENSG00000121653|ENST00000241014|MAPK8IP1 3.072263186857199 0.4590417271953214 2 [YV]E 3 -1 24.437 0 0 1.8079 0 0 0 957.4533063347257 957.4533063347257 4.973024840566467 0 0 0 0 0 2 0 0 [YV]E 1.8079 - 22 NaN NaN 109602 NaN 21560 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26691 104.4 NaN 67413 35 0 10716 0.261 + 30329 VLALFPLAF 9 27 495.8045789345055 989.594604935811 2 495.804931640625 MULTI HCD FTMS 0 0 0 26687 12044.703125 0.09394034614180738 -15 0.13607025146484375 4 Unmodified _VLALFPLAF_ REV__ENST00000495414.5_1_3:143692156-143692375:+|nuORF 5.230669730166228 0.3113646817964458 2 Y 1 -1 8.9794 0 0 0.90738 0 0 446.253997682647 377.25544153385005 823.5094392164971 0 0 0 0 0 0.5 0 0 0 Y 0.90738 - 1 + NaN NaN 110277.8 NaN 21561 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26692 104.41 NaN 51946 35 0 5293.8 0.261 + 29984 VFIPAAALDLF 11 34 588.8371800413433 NaN 0 588.8364868164062 PEAK HCD FTMS 0 0 0 26687 16996.396484375 0.3705328424548986 1 -0.02904510498046875 5 Unmodified _VFIPAAALDLF_ ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13 13.90604991867851 0.30267268458145574 2 {M(Oxidation (M))|F}A 2 9 11.326 0 0 0.96335 0 0 359.2214049051491 595.3239840143186 954.5453889194678 0 0 0 0 0 0.4247425010840047 0 0 0 {M(Oxidation (M))|F}A 0.96335 - 10 + NaN NaN 100096 NaN 21562 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26693 104.41 NaN 90761 35 0 11669 0.261 + 13834 KYPSPFFVF 9 37 566.2974955480676 1130.580438162935 2 566.2979736328125 MULTI HCD FTMS 0 0 0 26687 30122.2265625 0.6551277557276708 -2 0.01648712158203125 6 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 8.745405648335112 0.2847203663274469 2 V{M(Oxidation (M))|F} 2 7 20.969 0 0 1.8547 0 0 866.4313208237398 0 866.4313208237398 0 10.511525224473813 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.8547 + + 17 NaN NaN 106079.3 NaN 21563 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26694 104.41 NaN 40557 35 0 6714.7 0.261 + -1 HPSFAWKLVC 10 21 622.8169555664062 NaN 0 622.8169555664062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Carbamidomethyl (C) _HPSFAWKLVC(Carbamidomethyl (C))_ REV__ENST00000370766.7_1_X:134476327-134476507:-|nuORF 1.844237919475145 0.33860587697544825 2 {I|L} 1 -1 11.99 0 0 0.96488 0 0 852.4262170392593 274.08271204166255 1126.508929080922 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96488 + + 1 + NaN NaN 111178.2 NaN 21564 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26695 104.42 NaN 49438 35 0 3767.5 0.261 + 23216 RFRQYIYHV 9 33 641.3470458984375 NaN 0 641.3470458984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _RFRQYIYHV_ REV__ENSG00000183801|ENST00000329293|OLFML1;REV__ENST00000528308.1_1_11:7507082-7509735:+|nuORF 0.6014990680409731 0.29233206172879045 2 M 1 -1 1.9897 0 0 0.15536 0 0 704.3203905255874 442.2967928522094 1146.617183377797 0 0 0 0 0 0 0 0 0 M 0.15536 - 1 + NaN NaN 111900.4 NaN 21565 5128 26687 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26697 104.42 NaN 75445 35 0 8324.9 0.327 + 15751 LPFLVDLAL 9 37 500.80764467564353 NaN 0 500.80767822265625 PEAK HCD FTMS 0 0 0 26696 23841.455078125 0.4086280572391438 1 -0.01619720458984375 1 Unmodified _LPFLVDLAL_ ENSG00000173064|ENST00000682272|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4 7.289230182591677 0.2599242500475609 2 D 1 8 6.9897 0 0 0.69925 0 0 518.3711354432809 363.1822603815063 881.5533958247872 0 0 0 0 0 0 0 0 0 + D 0.69925 + + 4 + NaN NaN 104878.4 NaN 21566 5129 26696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26698 104.43 NaN 186690 35 0 50299 0.261 + 28609 TQKKKAERQF 10 42 632.3616427750883 1262.7087326169765 2 632.8624877929688 MULTI HCD FTMS 0 0 0 26696 13721.7353515625 0.20450256317766033 -9 0.1038360595703125 2 Unmodified _TQKKKAERQF_ ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G;ENSG00000261739|ENST00000562295|GOLGA8S 1.4819007175156935 0.4674597685733628 2 N 1 10 10.485 0 0 0.83032 0 0 703.3542537124828 442.29594108086656 1145.6501947933493 0 0 0 0 0 0.5 0 0 0 N 0.83032 - 3 + NaN NaN 112770.1 NaN 21567 5129 26696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26699 104.43 NaN 41096 35 0 3726 0.261 + 26249 SQEIIEMLSK 10 33 589.3118982972669 NaN 0 589.3125610351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _SQEIIEMLSK_ ENSG00000142528|ENST00000270617|ZNF473;ZNF473|p.V588Sfs*5|1|0.55|ENSG00000142528|chr19:50046199-50046200|-/G|frameshift_variant 2.498486711656943 0.3380459306859131 2 M 1 9 5.4846 0 0 0.46613 0 0 346.2118570419962 696.3400362604124 1042.5518933024086 0 0 0 0 0 0 0 0 0 + M 0.46613 + + 3 + NaN NaN 127634.4 NaN 21568 5129 26696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26700 104.43 NaN 46670 35 0 6910.9 0.261 + 490 ALYIEHSHTH 10 27 604.2971184311284 1206.5796839290567 2 604.7989501953125 MULTI HCD FTMS 0 0 0 26696 13750.453125 0.3166761186575102 2 -0.02901458740234375 4 Unmodified _ALYIEHSHTH_ ENST00000587829.5_1_19:37815142-37838149:+|nuORF 5.731851221503515 0.44496410492002586 2 SY[DP] 4 9 26.198 0 0 2.1713 0 0 726.3743685566484 0 726.3743685566484 0 11.49288766643714 0 0 0 1 0 0 0 SY[DP] 2.1713 - 5 NaN NaN 112150.9 NaN 21569 5129 26696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26702 104.44 NaN 312790 35 0 56273 0.327 + 35147 YVGSIEYMKEF 11 53 455.8847931602593 1364.6325500809778 3 455.8851318359375 MULTI HCD FTMS 0 0 0 26701 36147.95703125 0.192379224197911 3 -0.02783966064453125 1 Unmodified _YVGSIEYMKEF_ REV__tr|U7SLR4|U7SLR4_FUSNUL-lysine2,3-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01867PE=3SV=1 2.6312355333042263 0.4073809613003177 2 VY 2 -1 45.217 0 0 3.3135 0 0 0 1099.4766534368114 1099.4766534368114 38.22682509756042 0 0 0 0 0.4247425010840047 2 0 0 VY 3.3135 - 24 + NaN NaN 138805.2 NaN 21570 5130 26701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26703 104.44 NaN 101280 35 0 21448 0.261 + 8675 HFIHKCPLIR 10 40 632.3616427750883 1262.7087326169765 2 632.3618774414062 MULTI HCD FTMS 0 0 0 26701 18629.203125 0.21763103652967036 -16 0.17427825927734375 2 Unmodified _HFIHKCPLIR_ REV__ENSG00000163162|ENST00000295317|RNF149 0.45834013312273997 0.47287763746706196 2 T 1 -1 4.6041 0 0 0.36462 0 0 752.3661555679515 406.2754305475219 1158.6415861154735 0 0 0 0 0 0 0 0 0 T 0.36462 - 3 + NaN NaN 105824.7 NaN 21571 5130 26701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26704 104.45 NaN 94139 35 0 29513 0.261 + 21231 PRARRRRRL 9 30 618.9051513671875 NaN 0 618.9051513671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PRARRRRRL_ ENST00000504087.5_1_4:125633653-125633758:-|nuORF 0.5247636613948944 0.2927039108006614 2 TH 2 9 8.5835 0 0 0.70083 0 0 729.4110834670165 254.21933923892814 983.6304227059446 0 0 0 0 0 0 0 0 0 TH 0.70083 - 6 + NaN NaN 105339.8 NaN 21572 5130 26701 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26706 104.45 NaN 45581 35 0 7536.5 0.411 -1 MVWPWVAMA 9 41 574.7692405834457 NaN 0 574.7685546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MVWPWVAM(Oxidation (M))A_ nc|ENSG00000078808|Q9BRK5-3|SDF4;nc|ENSG00000078808|Q9BRK5-4|SDF4;nc|ENSG00000078808|Q9BRK5-6|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 2.302733041254933 0.2840881193086663 2 E 1 -1 6.9897 0 0 0.60911 0 0 165.0823311985916 850.3807467096311 1015.4630779082227 0 0 0 0 0 0 0 0 0 E 0.60911 - 1 + NaN NaN 105201.7 NaN 21573 5131 26705 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26708 104.46 NaN 104090 35 0 8494.3 0.411 + 7308 FTRLERKRRQR 11 78 515.9781030950878 1544.9124798854632 3 516.3126831054688 MULTI HCD FTMS 0 0 0 26707 50291.5546875 0.8510698860730775 -22 0.2401580810546875 1 Unmodified _FTRLERKRRQR_ REV__ENSG00000163935|ENST00000394752|SFMBT1;REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 0.4545168274142398 0.41692731010159206 2 Q 1 -1 3.9794 0 0 0.25758 0 0 1042.614489018079 371.2219637506469 1413.8364527687258 0 0 0 0 0 0 0 0 0 Q 0.25758 + + 11 + NaN NaN 127553.3 NaN 21574 5132 26707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26711 104.47 NaN 117360 35 0 17233 0.327 -1 VWVPVFVSSC 10 41 590.29639489012 1178.57823684704 2 590.7974243164062 MULTI HCD FTMS 0 0 0 26710 45642.24609375 0.35259886978030225 -9 0.1059417724609375 1 Carbamidomethyl (C) _VWVPVFVSSC(Carbamidomethyl (C))_ ENST00000518820.1_1_8:143560496-143561060:+|nuORF 10.823927491677226 0.4098686510432541 2 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 6 -1 44.666 0 0 3.7898 0 0 0 434.1334322565063 434.1334322565063 44.6657624451305 0 0 0 0 1.5 1.6989700043360187 0 0 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L} 3.7898 - 37 + NaN NaN 110797.9 NaN 21575 5134 26710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26712 104.48 NaN 174680 35 0 31058 0.261 -1 SSLVLLLCLTC 11 33 639.8436161932226 1277.672679453245 2 640.3449096679688 MULTI HCD FTMS 0 0 0 26710 17969.34375 0.3418495904071257 -5 0.05100250244140625 2 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 2 M 1 -1 3.9794 0 0 0.31146 0 0 701.3136586932235 442.2956637018188 1143.6093223950422 0 0 0 0 0 0 0 0 0 M 0.31146 - 1 + NaN NaN 120481.3 NaN 21576 5134 26710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26713 104.48 NaN 124970 35 0 7543.2 0.261 + 23040 RDIYRSQSF 9 48 586.2953520588161 1170.576151184432 2 586.2954711914062 MULTI HCD FTMS 0 0 0 26710 32417.1328125 0.152893604973019 -9 0.1059417724609375 3 Unmodified _RDIYRSQSF_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000467683.5_1_1:154523946-154525290:-|nuORF;ENST00000483639.1_1_1:154525170-154525290:-|nuORF;ENST00000497453.1_1_1:154524878-154531400:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1 7.608950283845883 0.29333554423920943 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}N 4 8 24.412 0 0 2.0855 0 0 631.2995472638687 0 631.2995472638687 0 0.7010752059608905 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}N 2.0855 - 25 NaN NaN 121475.1 NaN 21577 5134 26710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26714 104.48 NaN 207060 35 0 29154 0.261 -1 TQLLNSLCT 9 47 525.2679632406079 NaN 0 525.5804443359375 PEAK HCD FTMS 0 0 0 26710 9665.16015625 1 0 0 4 Carbamidomethyl (C) _TQLLNSLC(Carbamidomethyl (C))T_ ENSG00000165140|ENST00000375326|FBP1 3.944395688203298 0.27613285122220627 2 V 1 -1 3.9794 0 0 0.37952 0 0 687.3581972086319 259.0721834772094 946.4303806858413 0 0 0 0 0 0 0 0 0 V 0.37952 - 6 + NaN NaN 130680.6 NaN 21578 5134 26710 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26718 104.5 NaN 245470 35 0 42079 0.327 -1 SSLVLLLCLTC 11 34 639.8436161932226 1277.672679453245 2 640.3453979492188 MULTI HCD FTMS 0 0 0 26717 50256.046875 0.9560732589190999 -2 0.01364898681640625 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 8.745405648335112 0.3805662881914433 2 M 1 -1 5.4846 0 0 0.42926 0 0 701.313458445091 442.2957857721313 1143.6092442172223 0 0 0 0 0 0 0 0 0 M 0.42926 - 1 + NaN NaN 140312.5 NaN 21579 5137 26717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26719 104.51 NaN 161230 35 0 19753 0.261 + -1 SLDTVLCHLL 10 53 585.8128753990381 1169.6111978648762 2 585.814208984375 MULTI HCD FTMS 0 0 0 26717 26313.091796875 0.5183243065933201 -3 0.02945709228515625 2 Carbamidomethyl (C) _SLDTVLC(Carbamidomethyl (C))HLL_ REV__ENSG00000243335|ENST00000639828|KCTD7;REV__nc|ENSG00000243335|Q96MP8-2|KCTD7 9.38312468134398 0.42334543440173333 2 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C(Carbamidomethyl (C))H{I|L}{I|L} 9 -1 + 32.826 0 0 2.8066 2.8066 82.504 0 0 0 5.6424927368726046 24.242881055458845 5.6424927368726046 6.020599913279629 0 0.3494850021680094 0 0 0 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}C(Carbamidomethyl (C))H{I|L}{I|L};{[RE]|[WV]}P[{M(Oxidation (M))|F}V]C(Carbamidomethyl (C))H{I|L}{I|L};{[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}[CG]H{I|L}{I|L};{[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}[C(Carbamidomethyl (C))H]{I|L};{[RE]|[WV]}V[H{I|L}][C(Carbamidomethyl (C))M]{I|L}{I|L};{[RE]|[WV]}P[{M(Oxidation (M))|F}V][CG]H{I|L}{I|L};{[RE]|[WV]}P[{M(Oxidation (M))|F}V]{I|L}[C(Carbamidomethyl (C))H]{I|L} 2.8066;2.2919;2.0193;1.9779;1.6114;1.5046;1.4631 -;-;-;-;-;-;- 130 NaN NaN 130538.7 NaN 21580 5137 26717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26720 104.51 NaN 76546 35 0 9013 0.262 -1 LCILLVLL 8 30 499.8195512662626 997.6245495993252 2 499.8195495605469 MULTI HCD FTMS 0 0 0 26717 18364.126953125 0.2926309265459862 -5 0.04384613037109375 3 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}{I|L} 2 -1 25.969 0 0 2.6031 0 0 753.4448748075141 0 753.4448748075141 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6031 + + 2 NaN NaN 106348.9 NaN 21581 5137 26717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26721 104.51 NaN 81903 35 0 23547 0.261 -1 MRICRCWQR 9 40 436.8799070056862 1307.6178916172587 3 436.87908935546875 MULTI HCD FTMS 0 0 0 26717 8440.4970703125 0.27503491448560385 65 -0.6004409790039062 4 Carbamidomethyl (C) _MRIC(Carbamidomethyl (C))RCWQR_ ENST00000430398.2_1_1:73570714-73571443:+|nuORF 0.235843874597859 0.3492291811235561 2 N 1 -1 0.71334 0 0 0.054552 0 0 871.6749422537806 318.8861178033813 1190.561060057162 0 0 0 0 0 0 0 0 0 N 0.054552 - 2 + NaN NaN 112124.9 NaN 21582 5137 26717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26723 104.52 NaN 1694500 35 0 210860 0.411 + 31338 VWVPFIYSF 9 100 579.3049684279797 1156.5953839227593 2 579.30517578125 MULTI HCD FTMS 0 0 0 26722 217323.5 0.14653633782379646 -5 0.0520477294921875 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 129.2004930540761 0.0006534604433583781 2 {[RE]|[WV]}P{M(Oxidation (M))|F}V{I|L}YS{M(Oxidation (M))|F} 9 2 + 67.749 0 0 5.8576 5.8576 87.184 0 0 0 15.20181229336984 46.008629895458654 15.20181229336984 8.45098040014257 0 1.6694451763165201 1.0969100130080565 0.3252574989159953 0 {[RE]|[WV]}P{M(Oxidation (M))|F}V{I|L}YS{M(Oxidation (M))|F};{[RE]|[WV]}P{M(Oxidation (M))|F}{I|L}VYS{M(Oxidation (M))|F};[{I|L}A]TVPQP{NN|[MP]|[D{I|L}]|[EV]}G{M(Oxidation (M))|F} 5.8576;5.1269;2.6894 -;-;- 830 NaN NaN 620301.1 NaN 21583 5138 26722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26726 104.53 NaN 183330 35 0 35252 0.327 + 30330 VLALFPLAF 9 38 495.8045789345055 989.594604935811 2 495.8043518066406 MULTI HCD FTMS 0 0 0 26725 66028.265625 0.5149747622323154 -3 0.03000640869140625 1 Unmodified _VLALFPLAF_ REV__ENST00000495414.5_1_3:143692156-143692375:+|nuORF 5.230669730166228 0.3113646817964458 2 Y 1 -1 9.6041 0 0 0.97051 0 0 446.25294128514116 377.25768046150665 823.5106217466478 0 0 0 0 0 0.5 0 0 0 Y 0.97051 - 5 + NaN NaN 116952.1 NaN 21584 5140 26725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26727 104.54 NaN 75347 35 0 22344 0.261 -1 0 31 572.4372252815971 571.429948814997 1 572.4375 MULTI HCD FTMS 0 0 0 26725 60514.9609375 0.3885828139965193 -3 0.03000640869140625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116084.4 NaN 21585 5140 26725 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26729 104.54 NaN 107250 35 0 16918 0.327 + 5380 FGQRRLLL 8 51 501.8154030628399 NaN 0 501.8155822753906 PEAK HCD FTMS 0 0 0 26728 35479.12890625 0.25049615722232266 -5 0.04543304443359375 1 Unmodified _FGQRRLLL_ ENSG00000176472|ENST00000314228|ZNF575 19.438996006549623 0.38500361301801034 2 {I|L}{I|L}C(Carbamidomethyl (C)) 3 6 23.5 0 0 2.3462 0 0 131.09440188713864 481.29804407291255 612.3924459600512 0 0 0 0 0 0.7302046884880937 0 0 0 {I|L}{I|L}C(Carbamidomethyl (C)) 2.3462 - 34 + NaN NaN 105002 NaN 21586 5141 26728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26730 104.55 NaN 79585 35 0 10722 0.261 + 11524 IYSFFEFFD 9 40 607.7735555414296 1213.532558149659 2 607.774169921875 MULTI HCD FTMS 0 0 0 26728 34966.43359375 0.22351434267098558 -2 0.01580047607421875 2 Unmodified _IYSFFEFFD_ REV__tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1 4.75600775471527 0.31496297302216103 2 C(Carbamidomethyl (C)) 1 -1 4.6041 0 0 0.3794 0 0 623.1813141084466 427.30121790103755 1050.4825320094842 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.3794 - 2 + NaN NaN 102724 NaN 21587 5141 26728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26731 104.55 NaN 162560 35 0 17943 0.261 + -1 MNCECRYSSV 10 34 624.7413330078125 NaN 0 624.8743896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _MNC(Carbamidomethyl (C))ECRYSSV_ REV__ENSG00000138829|ENST00000262464|FBN2;REV__nc|ENSG00000138829|P35556-2|FBN2 0.35063188157827746 0.339884196735365 2 {I|L} 1 -1 3.9794 0 0 0.319 0 0 641.1157093732437 490.2487887018188 1131.3644980750626 0 0 0 0 0 0 0 0 0 {I|L} 0.319 - 3 + NaN NaN 135237.8 NaN 21588 5141 26728 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26734 104.56 NaN 308940 35 0 87059 0.327 + 11808 KEKRARFSEL 10 42 632.3616427750883 1262.7087326169765 2 632.3619995117188 MULTI HCD FTMS 0 0 0 26733 74429.96875 0.8695096155882123 -3 0.02872467041015625 1 Unmodified _KEKRARFSEL_ ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant;ENSG00000151687|ENST00000684021|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR 4.897010918128616 0.4493830473644964 2 M 1 10 8.0989 0 0 0.64139 0 0 686.350164357014 442.29578743034125 1128.6459517873552 0 0 0 0 0 0.5 0 0 0 M 0.64139 - 4 + NaN NaN 150292.7 NaN 21589 5143 26733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26735 104.57 NaN 92520 35 0 8241.1 0.261 + 13854 KYPSPFFVF 9 43 566.2979538010899 NaN 0 566.297607421875 PEAK HCD FTMS 0 0 0 26733 21598.86328125 0.5470693798366779 6 -0.0685272216796875 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 6.2057823575117 0.2651744870083793 2 S 1 8 5.4846 0 0 0.48511 0 0 203.14051101839215 837.3884371393186 1040.5289481577108 0 0 0 0 0 0 0 0 0 + S 0.48511 + + 2 + NaN NaN 113434.6 NaN 21590 5143 26733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26737 104.57 NaN 4721500 35 0 3135700 0.327 + 33901 YLPDFLDYF 9 54 596.7818807047006 1191.549208476201 2 596.7818603515625 MULTI HCD FTMS 0 0 0 26736 417540.53125 0.3993170488361576 1 -0.0192718505859375 1 Unmodified _YLPDFLDYF_ ENSG00000081019|ENST00000261441|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant 58.678817012210395 0.019429721296335044 2 {[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}{I|L}DY{M(Oxidation (M))|F} 9 2 + 69.403 0 0 5.8246 5.8246 83.864 0 0 0 17.904849854573683 46.47099695308839 17.904849854573683 0.47991791481905466 0 1.6549471895720984 1.6989700043360187 0 0 {[YD]|[{M(Oxidation (M))|F}M]}[{I|L}P]{M(Oxidation (M))|F}{I|L}DY{M(Oxidation (M))|F};{[YD]|[{M(Oxidation (M))|F}M]}{M(Oxidation (M))|F}{I|L}P{I|L}DY{M(Oxidation (M))|F};[Y{I|L}][DP]{M(Oxidation (M))|F}{I|L}DY{M(Oxidation (M))|F} 5.8246;5.7843;4.2318 -;-;+ + 78 NaN NaN 807619.6 NaN 21591 5144 26736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26738 104.58 NaN 389690 35 0 83756 0.263 -1 0 46 455.2251518804894 454.21787541388943 1 456.21942138671875 MULTI HCD FTMS 0 0 0 26736 13798.033203125 0.7371595631798836 3 -0.03289794921875 2 NaN NaN 2 [YG]V 3 -1 10.458 0 0 2.3023 0 0 0 132.0456484430297 132.0456484430297 3.8907562519182193 0 0 0 0 0 0 0 0 [YG]V 2.3023 - 6 + NaN NaN 157701.5 NaN 21592 5144 26736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26739 104.58 NaN 171430 35 0 10864 0.261 + 35261 YVSHPLWCLSF 11 50 451.22151297703965 1350.642709531319 3 451.5560607910156 MULTI HCD FTMS 0 0 0 26736 50373.7734375 0.3927684619225522 1 -0.0192718505859375 3 Unmodified _YVSHPLWCLSF_ REV__ENSG00000135973|ENST00000258456|GPR45 14.957161354070239 0.3267601744939039 2 YV 2 -1 16.198 0 0 1.1993 0 0 1070.4996788847573 0 1070.4996788847573 0 3.4336777395950335 0 0 0 0 0 0 0 YV 1.1993 + + 18 NaN NaN 121466.2 NaN 21593 5144 26736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26740 104.58 NaN 51040 35 0 6004.7 0.261 + -1 MMDSCIDNIM 10 32 623.2364327724406 NaN 0 623.2365112304688 PEAK HCD FTMS 0 0 0 26736 32914.0078125 0.5815030782240261 1 -0.0192718505859375 4 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))MDSC(Carbamidomethyl (C))IDNIM_ REV__ENSG00000169876|ENST00000306151|MUC17;REV__nc|ENSG00000169876|Q685J3-2|MUC17 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96713.6 NaN 21594 5144 26736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26741 104.59 NaN 55618 35 0 5208.2 0.261 + 16741 LYATIEYLL 9 37 549.8077281482502 NaN 0 549.8175048828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LYATIEYLL_ REV__ENSG00000164961|ENST00000318410|WASHC5 4.75600775471527 0.27219989241163056 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106595.2 NaN 21595 5144 26736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26743 104.59 NaN 185320 35 0 15732 0.326 + 7309 FTRLERKRRQR 11 61 515.9781030950878 1544.9124798854632 3 515.9785766601562 MULTI HCD FTMS 0 0 0 26742 99725.21875 1 0 0 1 Unmodified _FTRLERKRRQR_ REV__ENSG00000163935|ENST00000394752|SFMBT1;REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 0.08335046087909445 0.4185551196980541 2 D 1 -1 7.7423 0 0 0.50115 0 0 1121.7015556684696 305.1598299615844 1426.861385630054 0 0 0 0 0 0.4247425010840047 0 0 0 D 0.50115 - 8 + NaN NaN 114525.8 NaN 21596 5145 26742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26746 104.6 NaN 265750 35 0 20038 0.327 + 23041 RDIYRSQSF 9 56 586.2953520588161 1170.576151184432 2 586.2952270507812 MULTI HCD FTMS 0 0 0 26745 89844.6796875 0.42374743764418316 4 -0.048797607421875 1 Unmodified _RDIYRSQSF_ ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000467683.5_1_1:154523946-154525290:-|nuORF;ENST00000483639.1_1_1:154525170-154525290:-|nuORF;ENST00000497453.1_1_1:154524878-154531400:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1 21.536976647645854 0.1742816388551942 2 YS{M(Oxidation (M))|F} 3 6 35.802 0 0 3.0585 0 0 755.4006290579796 0 755.4006290579796 0 5.3706086345021475 0 0 0 0.7742275032520141 0 0.4247425010840047 0 YS{M(Oxidation (M))|F} 3.0585 - 133 NaN NaN 130894.2 NaN 21597 5147 26745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26747 104.61 NaN 174170 35 0 30253 0.261 -1 0 40 589.3121028734715 588.3048264068715 1 590.2968139648438 MULTI HCD FTMS 0 0 0 26745 19969.642578125 0.9737584586961153 -1 0.006622314453125 2 NaN NaN 2 {[RE]|[WV]}VW 4 -1 + 43.188 0 0 7.341 7.341 95.251 0 0 0 16.989700043360187 43.187587626244124 16.989700043360187 43.187587626244124 0 0 1.6989700043360187 0 0 {[RE]|[WV]}VW 7.341 - 11 NaN NaN 109322.6 NaN 21598 5147 26745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26748 104.61 NaN 98757 35 0 29631 0.264 + -1 GREMLWLMGPP 11 34 434.8822201250045 NaN 0 434.8823547363281 PEAK HCD FTMS 0 0 0 26745 41782.015625 0.3167927278801517 76 -0.7094345092773438 3 Oxidation (M) _GREMLWLM(Oxidation (M))GPP_ REV__nc|ENSG00000153443|Q8TB05-2|UBALD1 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108120.2 NaN 21599 5147 26745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26749 104.61 NaN 108260 35 0 13283 0.261 + 33281 YFLLQFTF 8 38 539.7841438491274 NaN 0 539.7845458984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YFLLQFTF_ REV__ENSG00000152078|ENST00000370203|TLCD4 5.230669730166228 0.38822285293237185 2 P 1 -1 9.6041 0 0 0.89129 0 0 567.3069878036139 410.1713991621776 977.4783869657915 0 0 0 0 0 0.5 0 0 0 P 0.89129 - 2 + NaN NaN 122359.1 NaN 21600 5147 26745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26750 104.62 NaN 76222 35 0 14559 0.261 + 14871 LKKTMSGTFLL 11 25 619.8643798828125 NaN 0 619.8643798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _LKKTMSGTFLL_ ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF;ENST00000557199.1_1_12:56740507-56742527:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2 3.2813086475875832 0.3328120158028032 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114055.4 NaN 21601 5147 26745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26752 104.62 NaN 108880 35 0 7711.4 0.411 + 16335 LRLIFITLEM 10 46 624.8746849594833 NaN 0 624.8751831054688 PEAK HCD FTMS 0 0 0 26751 7632.88916015625 0.33238398316527756 2 -0.02025604248046875 1 Unmodified _LRLIFITLEM_ REV__ENSG00000185432|ENST00000332160|METTL7A 1.4819007175156935 0.33891598740166873 2 {M(Oxidation (M))|F} 1 -1 3.0989 0 0 0.24837 0 0 506.3214391554914 591.3499633916974 1097.6714025471888 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.24837 + + 1 + NaN NaN 128967.3 NaN 21602 5148 26751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26754 104.63 NaN 210940 35 0 32069 0.327 -1 SSLVLLLCLTC 11 36 639.8436161932226 1277.672679453245 2 639.8440551757812 MULTI HCD FTMS 0 0 0 26753 45487.30859375 0.5418173776297084 9 -0.08199310302734375 1 2 Carbamidomethyl (C) _SSLVLLLC(Carbamidomethyl (C))LTC(Carbamidomethyl (C))_ ENSG00000124103|ENST00000371328|FAM209A;ENSG00000213714|ENST00000371325|FAM209B 5.731851221503515 0.39378271418728467 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124375 NaN 21603 5149 26753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26755 104.63 NaN 104780 35 0 36891 0.261 -1 0 36 589.3121028734715 588.3048264068715 1 589.3125 MULTI HCD FTMS 0 0 0 26753 24847.68359375 0.3317066462862768 -6 0.0685272216796875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112747.7 NaN 21604 5149 26753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26756 104.64 NaN 79486 35 0 6479.3 0.261 + 23806 RRQRSLLYR 9 39 624.378173828125 NaN 0 624.378173828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RRQRSLLYR_ REV__BSN|p.R2601Q|1|0.29|ENSG00000164061|chr3:49657358-49657358|G/A|missense_variant 0.5247636613948944 0.2927039108006614 2 V 1 -1 2.7642 0 0 0.22171 0 0 542.6821679669937 601.9602144830686 1144.6423824500623 0 0 0 0 0 0 0 0 0 V 0.22171 - 1 + NaN NaN 99995.3 NaN 21605 5149 26753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26758 104.64 NaN 1805800 35 0 227430 0.327 + 31339 VWVPFIYSF 9 83 579.3049684279797 1156.5953839227593 2 579.3053588867188 MULTI HCD FTMS 0 0 0 26757 583920.8125 0.3937246429532274 7 -0.05999755859375 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 170.39725721280982 3.610137724047835E-09 2 {[RE]|[WV]}VP{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 9 0 + 87.947 0 0 7.604 7.604 94.222 0 0 0 12.310173439826045 57.06653386214313 12.310173439826045 19.72275487285789 0 2.809894379144197 1.2218487496163564 0.3807196863200844 0 + + {[RE]|[WV]}VP{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F};KKQP{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F};KK[AG]P{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F};[KQ]C(Carbamidomethyl (C))[{I|L}V]{I|L}YS{M(Oxidation (M))|F};[{I|L}A]{[QC]|[C(Carbamidomethyl (C))A]}{I|L}{M(Oxidation (M))|F}[KT]S{M(Oxidation (M))|F};{[RE]|[WV]}VP{[TV]|[{I|L}S]}[Y{M(Oxidation (M))|F}]{M(Oxidation (M))|F};{[RE]|[WV]}VP{[WS]|[C(Carbamidomethyl (C)){I|L}]}V{[DA]|[EG]}V;[KQ][CG][{I|L}V]{I|L}YS{M(Oxidation (M))|F};[{I|L}A]TVP[QP]{NN|[MP]|[D{I|L}]|[EV]}G{M(Oxidation (M))|F};{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]}Y{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}VWV 7.604;5.8987;5.1026;3.6424;3.3577;3.2979;3.0141;2.8462;2.0303;1.6105 +;-;-;-;-;-;-;-;-;- + 1246 NaN NaN 369808.1 NaN 21606 5150 26757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26759 104.65 NaN 773810 35 0 210280 0.261 + 30491 VLYFFYTFP 9 70 598.8049036497393 1195.5952543662786 2 598.8046264648438 MULTI HCD FTMS 0 0 0 26757 221714.75 1 0 0 2 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 38.15118350030904 0.07383188072201104 2 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 9 -1 + 57.546 0 0 4.8132 4.8132 91.417 0 0 0 10.686362358410122 32.356537694451575 10.686362358410122 57.54608767593865 0 1.8494850021680094 1.6989700043360187 0 0 [YV]{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}[TP]Y 4.8132 - 129 NaN NaN 212494.7 NaN 21607 5150 26757 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26761 104.65 NaN 64488 35 0 6801 0.411 + 14771 LIDLDTIDVS 10 51 552.2931755437336 NaN 0 552.3283081054688 PEAK HCD FTMS 0 0 0 26760 16576.55859375 0.38084213553086727 21 -0.17774200439453125 1 Unmodified _LIDLDTIDVS_ ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant 3.944395688203298 0.33680843299986807 2 D 1 9 2.2185 0 0 0.20121 0 0 422.14665344932195 562.3683565729124 984.5150100222343 0 0 0 0 0 0 0 0 0 + D 0.20121 + + 1 + NaN NaN 127692.4 NaN 21608 5151 26760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26763 104.66 NaN 110390 35 0 24740 0.411 -1 0 49 416.2260875821063 415.2188111155063 1 416.2270202636719 MULTI HCD FTMS 0 0 0 26762 15550.0966796875 0.5170237330964695 3 -0.02606964111328125 1 NaN NaN 2 G{M(Oxidation (M))|F} 2 -1 16.454 0 0 3.9626 0 0 193.11822320222348 0 193.11822320222348 0 16.453650195120844 0 0 0 0 0 0 0 G{M(Oxidation (M))|F} 3.9626 - 5 + NaN NaN 125107.1 NaN 21609 5152 26762 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26765 104.67 NaN 48607 35 0 6099.5 0.327 + 20398 NYVKANYLPY 10 37 622.8186645507812 NaN 0 622.8186645507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 3.2813086475875832 0.33737594360511275 2 {I|L} 1 9 16.99 0 0 1.3673 0 0 852.4283799787125 274.08237634830317 1126.5107563270158 0 0 0 0 0 1 0 0 0 + {I|L} 1.3673 + + 4 + NaN NaN 102976.7 NaN 21610 5153 26764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26766 104.67 NaN 56698 35 0 7079 0.261 -1 0 35 563.097900390625 NaN 0 563.097900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 R 1 -1 1.9897 0 0 0.17709 0 0 520.0920845685563 444.31101404361567 964.403098612172 0 0 0 0 0 0 0 0 0 R 0.17709 - 1 + NaN NaN 105882.4 NaN 21611 5153 26764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26768 104.68 NaN 118970 35 0 19167 0.327 + 2397 DPITLFVAL 9 42 494.7893783186723 987.5642037041446 2 494.78961181640625 MULTI HCD FTMS 0 0 0 26767 21027.16015625 0.2533071625801962 -1 0.00936126708984375 1 Unmodified _DPITLFVAL_ ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB 34.10243960390752 0.09241788333544565 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VA{I|L} 5 5 47.008 0 0 4.76 0 0 392.2323170392594 0 392.2323170392594 0 44.78978457299817 0 0 0 1.2059771852360797 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}VA{I|L} 4.76 - 47 NaN NaN 117018.6 NaN 21612 5154 26767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26769 104.68 NaN 27627 35 0 3726.7 0.261 + 30010 VFNLFRDFF 9 20 602.8123779296875 NaN 0 602.8123779296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VFNLFRDFF_ ENSG00000221886|ENST00000408953|FAM200C 3.944395688203298 0.27613285122220627 2 T 1 9 6.9897 0 0 0.58121 0 0 165.0676719709 933.4622896783811 1098.5299616492812 0 0 0 0 0 0 0 0 0 T 0.58121 - 1 + NaN NaN 107577.8 NaN 21613 5154 26767 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26771 104.69 NaN 102610 35 0 12492 0.412 + 13835 KYPSPFFVF 9 57 566.2974994825877 1130.5804460319753 2 566.2974853515625 MULTI HCD FTMS 0 0 0 26770 29732.43359375 0.7670199972308085 -10 0.095977783203125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 27.959 0 0 2.473 0 0 866.430887111468 0 866.430887111468 0 10 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.473 + + 57 NaN NaN 117345.1 NaN 21614 5155 26770 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26773 104.69 NaN 195180 35 0 37437 0.327 -1 0 45 455.2251518804894 454.21787541388943 1 456.21929931640625 MULTI HCD FTMS 0 0 0 26772 12692.3779296875 0.6780899590996348 13 -0.1145172119140625 1 NaN NaN 2 [YG]V 3 -1 8.9524 0 0 1.971 0 0 0 132.0450380914672 132.0450380914672 2.7203402217513784 0 0 0 0 0 0 0 0 [YG]V 1.971 - 5 + NaN NaN 132354.6 NaN 21615 5156 26772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26774 104.7 NaN 111800 35 0 15095 0.261 -1 MGLTLLLLL 9 42 501.8155120993598 NaN 0 501.8154296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))GLTLLLLL_ ENSG00000161911|ENST00000426005|TREML1;nc|ENSG00000161911|Q86YW5-2|TREML1;nc|ENSG00000161911|Q86YW5-3|TREML1 10.823927491677226 0.2427956001690155 2 {I|L}{I|L}C(Carbamidomethyl (C)) 3 -1 19.693 0 0 1.9661 0 0 131.0945501116658 481.3004244440063 612.3949745556721 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L}{I|L}C(Carbamidomethyl (C)) 1.9661 - 7 + NaN NaN 110899.2 NaN 21616 5156 26772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26776 104.7 NaN 132710 35 0 42512 0.327 -1 VFVDLEPMVI 10 32 589.3120299352045 1176.6095069372088 2 589.8129272460938 MULTI HCD FTMS 0 0 0 26775 21884.427734375 0.19734639415007293 -32 0.33525848388671875 1 Oxidation (M) _VFVDLEPM(Oxidation (M))VI_ ENST00000530835.1_1_11:90015825-90016947:+|nuORF 3.5964929083625545 0.45626689593999237 2 V{I|L} 2 -1 20.969 0 0 1.7822 0 0 946.4461371180936 0 946.4461371180936 0 10.511525224473813 0 0 0 0 0 0 0 V{I|L} 1.7822 + + 8 NaN NaN 114762.6 NaN 21617 5157 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26777 104.71 NaN 103250 35 0 16729 0.261 + 28427 TPILRRLKM 9 34 564.3589267561453 NaN 0 564.6231689453125 PEAK HCD FTMS 0 0 0 26775 6398.92236328125 0.32366382708414426 8 -0.0740203857421875 2 Unmodified _TPILRRLKM_ ENST00000589727.5_1_17:40613024-40622135:+|nuORF 0.5247636613948944 0.2927039108006614 2 A 1 9 5.4846 0 0 0.48678 0 0 563.57006062031 489.08335291080317 1052.653413531113 0 0 0 0 0 0 0 0 0 A 0.48678 - 1 + NaN NaN 109034 NaN 21618 5157 26775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26779 104.71 NaN 112100 35 0 10612 0.327 + 7310 FTRLERKRRQR 11 44 515.9781030950878 1544.9124798854632 3 515.9783325195312 MULTI HCD FTMS 0 0 0 26778 48086.08984375 0.48218585475652315 13 -0.11084747314453125 1 Unmodified _FTRLERKRRQR_ REV__ENSG00000163935|ENST00000394752|SFMBT1;REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 0.08335046087909445 0.4185551196980541 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124570.9 NaN 21619 5158 26778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26780 104.72 NaN 43919 35 0 7796.6 0.261 + -1 WGCFQHCK 8 26 533.22314453125 NaN 0 533.22314453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _WGC(Carbamidomethyl (C))FQHCK_ REV__ENSG00000111880|ENST00000369485|RNGTT;REV__nc|ENSG00000111880|O60942-2|RNGTT;REV__nc|ENSG00000111880|O60942-3|RNGTT;REV__nc|ENSG00000111880|O60942-4|RNGTT 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115032.6 NaN 21620 5158 26778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26782 104.72 NaN 117020 35 0 69624 0.327 -1 0 28 627.367126319812 626.3598498532119 1 627.3673095703125 MULTI HCD FTMS 0 0 0 26781 46788.48046875 0.7090143973503913 6 -0.05524444580078125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 128295.8 NaN 21621 5159 26781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26783 104.73 NaN 103810 35 0 8287.6 0.261 + 13645 KYPENFFLL 9 57 585.8130991239275 1169.6116453146549 2 585.8139038085938 MULTI HCD FTMS 0 0 0 26781 35856.93359375 0.6230937243605439 -18 0.179656982421875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 24.609 0 0 2.104 0 0 778.36137587715 0 778.36137587715 0 19.124628150806373 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.104 + + 31 NaN NaN 104783.3 NaN 21622 5159 26781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26785 104.73 NaN 59324 35 0 6116.7 0.411 + 28218 TLDTTTLSTF 10 45 550.2774742769673 NaN 0 550.2774047851562 PEAK HCD FTMS 0 0 0 26784 15991.630859375 0.6469123712944844 -6 0.05437469482421875 1 Unmodified _TLDTTTLSTF_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant 3.5964929083625545 0.337106189561315 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.63627 0 0 233.10467892327193 715.368700841627 948.4733797648989 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63627 + + 2 + NaN NaN 104884.9 NaN 21623 5160 26784 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26787 104.74 NaN 55415 35 0 7914.6 0.327 + 11310 IYLTFPVAMF 10 28 601.3200155283677 1200.6254781235352 2 601.8209228515625 MULTI HCD FTMS 0 0 0 26786 16223.16015625 0.08063358047253188 -14 0.13488006591796875 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 14.838274106304384 0.3723198072575719 2 {M(Oxidation (M))|F} 1 9 14.292 0 0 1.1904 0 0 490.2797272463852 560.2538868267649 1050.5336140731501 0 0 0 0 0 0.8807196863200843 0 0 0 + {M(Oxidation (M))|F} 1.1904 + + 7 + NaN NaN 95907.8 NaN 21624 5161 26786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26788 104.74 NaN 167790 35 0 41246 0.261 + 21148 PPLPYPSPGPG 11 37 539.7841438491274 NaN 0 539.7847290039062 PEAK HCD FTMS 0 0 0 26786 10771.19921875 0.16969750641759726 6 -0.05538177490234375 2 Unmodified _PPLPYPSPGPG_ REV__ENSG00000108175|ENST00000334512|ZMIZ1;REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 5.296884461304476 0.3270944076746277 2 P 1 -1 9.6041 0 0 0.89129 0 0 567.3060979015767 410.171766531104 977.4778644326807 0 0 0 0 0 0.5 0 0 0 P 0.89129 + + 4 + NaN NaN 101943.1 NaN 21625 5161 26786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26789 104.75 NaN 106960 35 0 8208.4 0.261 + -1 GFSALLCLHD 10 37 566.7755685593719 1131.5365841855437 2 566.7755126953125 MULTI HCD FTMS 0 0 0 26786 14881.3388671875 0.4768729993368806 -9 0.0785980224609375 3 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 13.042465956692817 0.38911719078024076 2 SW 2 -1 30.217 0 0 2.6704 0 0 840.41550371855 0 840.41550371855 0 12.25772496747986 0 0 0 0.9247425010840047 0 0 0 SW 2.6704 - 39 + NaN NaN 115407.1 NaN 21626 5161 26786 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26792 104.76 NaN 118350 35 0 19628 0.327 + 11311 IYLTFPVAMF 10 42 601.3200155283677 1200.6254781235352 2 601.822265625 MULTI HCD FTMS 0 0 0 26791 30319.939453125 0.15069846159867833 -12 0.105926513671875 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 46.020951573049366 0.09315764076686055 2 {M(Oxidation (M))|F}PVAM{M(Oxidation (M))|F} 6 4 49.486 0 0 4.1217 0 0 490.278123924025 0 490.278123924025 0 44.88203938940933 0 0 0 2.10697580801237 0 0 0 + {M(Oxidation (M))|F}PVAM{M(Oxidation (M))|F} 4.1217 + + 73 NaN NaN 111670.7 NaN 21627 5163 26791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26793 104.76 NaN 39134 35 0 8656.9 0.261 + 35052 YTLIKPFLKD 10 25 619.36083984375 NaN 0 619.36083984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YTLIKPFLKD_ ENSG00000177182|ENST00000325897|CLVS1 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114106.3 NaN 21628 5163 26791 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26795 104.77 NaN 266920 35 0 50484 0.327 + 30492 VLYFFYTFP 9 40 598.8049036497393 1195.5952543662786 2 598.8049926757812 MULTI HCD FTMS 0 0 0 26794 96401.1015625 0.43479787232243233 14 -0.12169647216796875 1 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 18.13498045792455 0.20367413111508956 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[YV] 6 -1 22.918 0 0 1.9169 0 0 379.173721499693 0 379.173721499693 0 20.44408732588998 0 0 0 1.3252574989159953 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{[QN]|[E{I|L}]|[KN]}[YV] 1.9169 - 15 NaN NaN 133247.8 NaN 21629 5164 26794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26796 104.77 NaN 80031 35 0 9480.3 0.261 + 7198 FSLPSSWDY 9 36 551.2468411128375 NaN 0 550.77490234375 PEAK HCD FTMS 0 0 0 26794 5056.39453125 0.508968524790372 -2 0.0163116455078125 2 Unmodified _FSLPSSWDY_ ENST00000512931.5_1_4:81256922-81570142:+|nuORF;ENST00000607222.1_1_1:1550199-1550712:-|nuORF 4.75600775471527 0.27219989241163056 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105250.5 NaN 21630 5164 26794 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26798 104.78 NaN 580580 35 0 71713 0.327 + 31340 VWVPFIYSF 9 53 579.3049684279797 1156.5953839227593 2 579.3050537109375 MULTI HCD FTMS 0 0 0 26797 113370.7890625 0.0764433678153208 22 -0.19710540771484375 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 70.71552829651908 0.008856681705782516 2 {[RE]|[WV]}VP{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F} 9 0 + 59.976 0 0 5.1856 5.1856 92.012 0 0 0 5.6424927368725974 49.518440961331294 5.6424927368725974 58.374503697314424 0 1.5356668758921828 0 0.3807196863200844 0 + + {[RE]|[WV]}VP{M(Oxidation (M))|F}{I|L}YS{M(Oxidation (M))|F};{[RE]|[WV]}{[QD]|[EN]|[WG]|[KD]|[RS]}[EP]V{[RE]|[WV]} 5.1856;0.13847 +;- + 248 NaN NaN 176232.3 NaN 21631 5165 26797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26799 104.78 NaN 130710 35 0 11654 0.262 + 2265 DLLGTWVF 8 37 475.7525932707211 949.4906336082422 2 475.7525634765625 MULTI HCD FTMS 0 0 0 26797 44885.88671875 0.22166184689659174 -17 0.15427398681640625 2 Unmodified _DLLGTWVF_ ENSG00000109861|ENST00000227266|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC 30.224811164608877 0.3565035853404968 2 WV{M(Oxidation (M))|F} 3 5 30.362 0 0 3.1977 0 0 499.26328045351454 0 499.26328045351454 0 28.767959391884546 0 0 0 0.805462187404089 0 0 0 + WV{M(Oxidation (M))|F} 3.1977 + + 11 NaN NaN 109218.9 NaN 21632 5165 26797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26801 104.79 NaN 52047 35 0 4088.8 0.412 + 35129 YVEPIQSF 8 40 491.7479713808193 NaN 0 491.7485656738281 PEAK HCD FTMS 0 0 0 26800 10101.9130859375 0.8071924878145007 1 -0.0075531005859375 1 Unmodified _YVEPIQSF_ REV__ENSG00000040199|ENST00000568954|PHLPP2;REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF;REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant 19.438996006549623 0.38500361301801034 2 EP 2 -1 10.573 0 0 1.0773 0 0 590.3084294786324 162.0559481256469 752.3643776042793 0 0 0 0 0 0.5 0 0 0 EP 1.0773 + + 10 + NaN NaN 111537.7 NaN 21633 5166 26800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26804 104.8 NaN 162550 35 0 67465 0.411 -1 MPDVIDFLVL 10 40 589.3120299352045 1176.6095069372088 2 589.3126831054688 MULTI HCD FTMS 0 0 0 26803 85160.1875 0.6297692851570936 -7 0.06237030029296875 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 18.1463463914782 0.3413772152514074 2 D{M(Oxidation (M))|F}{I|L}V{I|L} 5 -1 47.206 0 0 4.0121 0 0 571.2673207013687 0 571.2673207013687 0 31.74865027867405 0 0 0 0.9247425010840047 0 0 0 D{M(Oxidation (M))|F}{I|L}V{I|L} 4.0121 + + 22 NaN NaN 134570.2 NaN 21634 5168 26803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26806 104.81 NaN 94774 35 0 9630.2 0.411 + 13836 KYPSPFFVF 9 49 566.2974994825877 1130.5804460319753 2 566.297119140625 MULTI HCD FTMS 0 0 0 26805 20128.05078125 0.5192517257565243 4 -0.03455352783203125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 27.206 0 0 2.4064 0 0 866.4310251995473 0 866.4310251995473 0 11.00833760139686 0 0 0 0.7742275032520141 0 0 0 + V{M(Oxidation (M))|F} 2.4064 + + 24 NaN NaN 116620 NaN 21635 5169 26805 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26808 104.82 NaN 53245 35 0 7835.1 0.411 + -1 PSCRVFMC 8 36 508.21211498777524 NaN 0 508.2118225097656 PEAK HCD FTMS 0 0 0 26807 9345.76171875 0.4680636363004991 -14 0.12203216552734375 1 Carbamidomethyl (C),Oxidation (M) _PSCRVFM(Oxidation (M))C(Carbamidomethyl (C))_ REV__ABHD17B|p.G99Wfs*5|1|0.22|ENSG00000107362|chr9:71874786-71874787|-/A|frameshift_variant;REV__ENSG00000107362|ENST00000333421|ABHD17B;REV__nc|ENSG00000107362|Q5VST6-2|ABHD17B 0.7936320650641473 0.38822285293237185 2 K 1 -1 6.9897 0 0 0.68904 0 0 379.52236122379423 503.75809335860055 883.2804545823948 0 0 0 0 0 0 0 0 0 K 0.68904 - 3 + NaN NaN 103671.1 NaN 21636 5170 26807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26811 104.83 NaN 77893 35 0 20729 0.327 -1 DDWASNKVMFK 11 39 452.88049966449034 NaN 0 452.880615234375 PEAK HCD FTMS 0 0 0 26810 10082.119140625 0.35895981833815294 1 -0.01248931884765625 1 Oxidation (M) _DDWASNKVM(Oxidation (M))FK_ ENSG00000166483|ENST00000450114|WEE1;nc|ENSG00000166483|P30291-2|WEE1;SWAP70-WEE1|1|fusion;WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant 0.4545168274142398 0.3408308101233591 2 W 1 -1 1.5938 0 0 0.17635 0 0 511.5659787217557 203.0687655084594 714.6347442302151 0 0 0 0 0 0 0 0 0 W 0.17635 + + 1 + NaN NaN 105707 NaN 21637 5172 26810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26812 104.83 NaN 66808 35 0 8567.3 0.261 -1 MYIIPVVLF 9 32 555.8169734303885 NaN 0 555.817138671875 PEAK HCD FTMS 0 0 0 26810 11872.8974609375 0.44165211063542764 -8 0.0626678466796875 2 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 14.581692164780916 0.22376707489839515 2 {I|L} 1 -1 11.99 0 0 1.0805 0 0 165.08132004731186 828.434975347231 993.5162953945428 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0805 + + 1 + NaN NaN 102035.6 NaN 21638 5172 26810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26813 104.84 NaN 107620 35 0 53080 0.261 + 31462 VYDVITFFL 9 30 558.8025512695312 NaN 0 558.8025512695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VYDVITFFL_ REV__ENSG00000152223|ENST00000282041|EPG5;REV__ENST00000585906.5_1_18:43437816-43497657:-|nuORF;REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 10.823927491677226 0.2427956001690155 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}T 3 -1 13.984 0 0 1.2535 0 0 131.09597040839986 586.2854097955686 717.3813802039685 0 0 0 0 0 0.3807196863200844 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}T 1.2535 - 8 + NaN NaN 114831.1 NaN 21639 5172 26810 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26815 104.84 NaN 66829 35 0 15420 0.327 -1 0 26 645.3780198205401 644.37074335394 1 645.3773193359375 MULTI HCD FTMS 0 0 0 26814 35100.0703125 0.7624547777043519 8 -0.07079315185546875 1 NaN NaN 2 C 1 -1 1.9897 0 0 0.30878 0 0 118.0936570275713 420.2532137506469 538.3468707782182 0 0 0 0 0 0 0 0 0 C 0.30878 - 1 + NaN NaN 97032.7 NaN 21640 5173 26814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26816 104.85 NaN 48123 35 0 10787 0.261 + 17805 MFLICVFCVAV 11 24 622.818115234375 NaN 0 622.818115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _MFLICVFCVAV_ REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF 3.5964929083625545 0.33191792882328314 2 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.425556004103 274.08262048892817 1126.5081764930312 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 2 + NaN NaN 92801.7 NaN 21641 5173 26814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26818 104.85 NaN 59754 35 0 5072.5 0.327 + 13646 KYPENFFLL 9 33 585.8130991239275 1169.6116453146549 2 585.812744140625 MULTI HCD FTMS 0 0 0 26817 24529.0234375 0.4262461687817885 -3 0.02916717529296875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 3.2813086475875832 0.32614229037259 2 {I|L}{I|L} 2 7 20.969 0 0 1.7928 0 0 925.4322987287125 0 925.4322987287125 0 20.969100130080562 0 0 0 0 0 0 0 + {I|L}{I|L} 1.7928 + + 2 NaN NaN 102808.5 NaN 21642 5174 26817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26819 104.86 NaN 55496 35 0 5884.3 0.261 -1 LAGNWEKSW 9 23 566.7755685593719 1131.5365841855437 2 567.2769165039062 MULTI HCD FTMS 0 0 0 26817 16672.95703125 0.5385948243614049 8 -0.07390594482421875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LAGNWEKSW_ ENST00000443993.1_1_9:132342759-132345006:+|nuORF 5.296884461304476 0.3108627248283497 2 SW 2 -1 22.959 0 0 2.029 0 0 840.4152387866293 0 840.4152387866293 0 1.9897000433601875 0 0 0 0.5 0 0 0 SW 2.029 + + 10 NaN NaN 89689.9 NaN 21643 5174 26817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26820 104.86 NaN 46700 35 0 6457.9 0.261 + 14529 LFDSILAHAE 10 31 558.2924476587997 NaN 0 558.3499145507812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LFDSILAHAE_ REV__ENSG00000158428|ENST00000289388|CATIP 3.2813086475875832 0.33737594360511275 2 {I|L} 1 -1 11.99 0 0 1.0757 0 0 575.3088200228743 423.16660486392817 998.4754248868026 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0757 + + 2 + NaN NaN 102619 NaN 21644 5174 26817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26822 104.87 NaN 366140 35 0 75492 0.411 + 11312 IYLTFPVAMF 10 56 601.3200155283677 1200.6254781235352 2 601.319580078125 MULTI HCD FTMS 0 0 0 26821 306768.71875 1 0 0 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 133.70201269244603 1.2298199566238236E-05 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVAM{M(Oxidation (M))|F} 10 0 + 116.96 0 0 9.7417 9.7417 98.834 0 0 0 19.744237387763093 107.78064435195724 19.744237387763093 59.35078169319297 0 3.1307196863200843 1.3979400086720375 1.6549471895720984 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}PVAM{M(Oxidation (M))|F};[Y{I|L}][VP]{M(Oxidation (M))|F}[{I|L}T]AM{M(Oxidation (M))|F};[Y{I|L}][VP][YV]VAM{M(Oxidation (M))|F};[Y{I|L}]{I|L}T{M(Oxidation (M))|F}G[{I|L}P]M{M(Oxidation (M))|F};[Y{I|L}]{I|L}{[CA]|SS}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V];[Y{I|L}]{[WT]|[RM]}{M(Oxidation (M))|F}{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}[{I|L}V];[Y{I|L}]{I|L}TW{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[{I|L}V];[Y{I|L}]{[ET]|[MV]}{I|L}[{I|L}T][WY];[Y{I|L}]{[WT]|[RM]}{I|L}{{M(Oxidation (M))|F}{M(Oxidation (M))|F}|[YM]}[{I|L}V] 9.7417;4.7984;4.5547;4.2991;3.3488;2.7017;2.527;1.422;1.113 +;-;-;-;-;-;-;-;- + 337 NaN NaN 215331.4 NaN 21645 5175 26821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26824 104.87 NaN 30943 35 0 5753.9 0.327 + 861 AWSPPATLFLF 11 31 625.3340217442391 1248.653490555278 2 625.8357543945312 MULTI HCD FTMS 0 0 0 26823 17154.935546875 0.45574191118059376 1 -0.00945281982421875 1 Unmodified _AWSPPATLFLF_ ENSG00000138131|ENST00000260702|LOXL4 2.735195868890462 0.4069250265843076 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93485.7 NaN 21646 5176 26823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26825 104.88 NaN 102350 35 0 13032 0.261 + 21149 PPLPYPSPGPG 11 35 539.7841438491274 NaN 0 539.7842407226562 PEAK HCD FTMS 0 0 0 26823 11660.5771484375 0.18370942968312282 21 -0.19393157958984375 2 Unmodified _PPLPYPSPGPG_ REV__ENSG00000108175|ENST00000334512|ZMIZ1;REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 2.9952420565917617 0.33362350433860827 2 {I|L} 1 -1 5.4846 0 0 0.50898 0 0 172.10654345821723 789.3474825494749 961.4540260076922 0 0 0 0 0 0 0 0 0 {I|L} 0.50898 + + 1 + NaN NaN 111954.4 NaN 21647 5176 26823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26828 104.89 NaN 137110 35 0 22153 0.412 + 30493 VLYFFYTFP 9 60 598.8049036497393 1195.5952543662786 2 598.8048095703125 MULTI HCD FTMS 0 0 0 26827 34591.89453125 0.15601981614326516 28 -0.25525665283203125 1 Unmodified _VLYFFYTFP_ REV__ENSG00000174946|ENST00000309180|GPR171 23.1484247019978 0.1603590852062899 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 6 -1 31.687 0 0 2.6503 0 0 379.17326609913204 0 379.17326609913204 0 26.202519733105163 0 0 0 1.774227503252014 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]} 2.6503 - 107 + NaN NaN 130968.9 NaN 21648 5178 26827 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26830 104.9 NaN 279590 35 0 30145 0.327 + 31341 VWVPFIYSF 9 35 579.3049684279797 1156.5953839227593 2 579.304931640625 MULTI HCD FTMS 0 0 0 26829 37010.625 0.024955430259819333 36 -0.33104705810546875 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 42.09456458481378 0.05572955244001856 2 {I|L}YS{M(Oxidation (M))|F} 4 5 39.87 0 0 3.4472 0 0 628.3382435529312 0 628.3382435529312 0 30.917352150239722 0 0 0 1.0941876774005248 0 0 0 + {I|L}YS{M(Oxidation (M))|F} 3.4472 + + 27 NaN NaN 133387.5 NaN 21649 5179 26829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26831 104.9 NaN 97404 35 0 14181 0.262 + 29808 VELVDGGHF 9 40 486.74381866586265 971.4730843985253 2 486.743896484375 MULTI HCD FTMS 0 0 0 26829 17990.720703125 0.3493180083033122 -2 0.01432037353515625 2 Unmodified _VELVDGGHF_ REV__LRAT|p.R47G|1|0.14|ENSG00000121207|chr4:154744465-154744465|C/G|missense_variant 15.847184025352803 0.2234401846867398 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}Y 4 -1 35.049 0 0 3.6079 0 0 0 464.1784533554952 464.1784533554952 13.595756168365014 0 0 0 0 0.4247425010840047 1.6989700043360187 0 0 {NN|[MP]|[D{I|L}]|[EV]}{I|L}Y 3.6079 - 16 + NaN NaN 101518.9 NaN 21650 5179 26829 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26833 104.91 NaN 242050 35 0 32163 0.411 + 2266 DLLGTWVF 8 62 475.7525932707211 949.4906336082422 2 475.75201416015625 MULTI HCD FTMS 0 0 0 26832 139293.3125 0.687877976045339 -2 0.01674652099609375 1 Unmodified _DLLGTWVF_ ENSG00000109861|ENST00000227266|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC 97.07464715276575 0.03528778528112001 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}GTWV{M(Oxidation (M))|F} 8 0 + 93.682 0 0 9.8666 9.8666 98.483 0 0 0 12.04628427264403 12.04628427264403 12.04628427264403 44.987737688117235 0 2.6989700043360187 1.5228787452803376 1.110924374808178 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}GTWV{M(Oxidation (M))|F};{[TV]|[{I|L}S]}[TP]TWV{M(Oxidation (M))|F} 9.8666;5.1285 +;- + 147 NaN NaN 163201.5 NaN 21651 5180 26832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26835 104.91 NaN 107000 35 0 16178 0.327 -1 VYLHCGQGFRE 11 39 455.8848131257474 NaN 0 455.8848876953125 PEAK HCD FTMS 0 0 0 26834 39210.9375 0.9090445586691906 1 -0.01274871826171875 1 Carbamidomethyl (C) _VYLHC(Carbamidomethyl (C))GQGFRE_ ENSG00000068784|ENST00000263736|SRBD1;nc|ENSG00000068784|Q8N5C6-2|SRBD1 4.11662792887243 0.330442455561113 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105366.8 NaN 21652 5181 26834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26836 104.92 NaN 35029 35 0 5988.6 0.261 + 10215 IGYIELFNF 9 23 558.2924476587997 NaN 0 558.292236328125 PEAK HCD FTMS 0 0 0 26834 25693.19140625 0.6680562123590649 1 -0.01274871826171875 2 Unmodified _IGYIELFNF_ REV__tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 11.99 0 0 1.0757 0 0 575.3067448275618 423.16672693424067 998.4734717618026 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0757 + + 1 + NaN NaN 90931.3 NaN 21653 5181 26834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26837 104.92 NaN 50938 35 0 7799.5 0.261 + 23503 RMVVRHARRL 10 35 647.3937395336571 NaN 0 647.3932495117188 PEAK HCD FTMS 0 0 0 26834 21371.818359375 0.5147774991807215 -27 0.23680877685546875 3 Unmodified _RMVVRHARRL_ ENSG00000161996|ENST00000293879|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;ENST00000546516.5_1_16:705169-713132:+|nuORF;ENST00000549648.5_1_16:699416-706047:+|nuORF;ENST00000552943.5_1_16:704926-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;nc|ENSG00000161996|Q96KV7-5|WDR90 1.4819007175156935 0.33891598740166873 2 M 1 9 4.6041 0 0 0.35614 0 0 682.460317346808 476.2566317193969 1158.716949066205 0 0 0 0 0 0 0 0 0 + M 0.35614 + + 2 + NaN NaN 102741.7 NaN 21654 5181 26834 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26839 104.93 NaN 362570 35 0 163800 0.327 -1 MPDVIDFLVL 10 37 589.3120299352045 1176.6095069372088 2 589.3121337890625 MULTI HCD FTMS 0 0 0 26838 130018.78125 0.9615036947260012 7 -0.06731414794921875 1 Oxidation (M) _M(Oxidation (M))PDVIDFLVL_ ENSG00000146247|ENST00000275034|PHIP;ENSG00000165288|ENST00000373275|BRWD3;ENSG00000185658|ENST00000342449|BRWD1;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-2|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000185658|Q9NSI6-3|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant 22.736283301280096 0.29844449404982915 2 D{M(Oxidation (M))|F}{I|L}V{I|L} 5 -1 49.196 0 0 4.1812 0 0 571.265916892775 0 571.265916892775 0 37.2062251842808 0 0 0 1.4247425010840047 0 0 0 D{M(Oxidation (M))|F}{I|L}V{I|L} 4.1812 + + 37 NaN NaN 137528.5 NaN 21655 5182 26838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26840 104.93 NaN 66186 35 0 8655 0.262 + 35127 YVEPIQSF 8 35 491.7475418500073 981.4805307668146 2 491.7475280761719 MULTI HCD FTMS 0 0 0 26838 37253.50390625 1 0 0 2 Unmodified _YVEPIQSF_ REV__ENSG00000040199|ENST00000568954|PHLPP2;REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF;REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant 19.438996006549623 0.45076845602799126 2 EP{M(Oxidation (M))|F} 3 -1 28.812 0 0 2.9356 0 0 590.3074483466959 0 590.3074483466959 0 23.327731244245342 0 0 0 0.5 0 0 0 EP{M(Oxidation (M))|F} 2.9356 - 16 + NaN NaN 101176.3 NaN 21656 5182 26838 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26842 104.94 NaN 92959 35 0 7999.7 0.411 + 13837 KYPSPFFVF 9 51 566.2974994825877 1130.5804460319753 2 566.774658203125 MULTI HCD FTMS 0 0 0 26841 10657.6171875 0.4292475820948685 25 -0.2266693115234375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 27.959 0 0 2.473 0 0 866.429974842489 0 866.429974842489 0 11.760912590556813 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.473 + + 36 NaN NaN 119536.4 NaN 21657 5183 26841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26845 104.95 NaN 47677 35 0 5853 0.327 + 35128 YVEPIQSF 8 31 491.7475418500073 981.4805307668146 2 491.7478942871094 MULTI HCD FTMS 0 0 0 26844 14911.75 0.4002777842730188 3 -0.03061676025390625 1 Unmodified _YVEPIQSF_ REV__ENSG00000040199|ENST00000568954|PHLPP2;REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF;REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant 19.438996006549623 0.45076845602799126 2 EP{M(Oxidation (M))|F} 3 -1 28.812 0 0 2.9356 0 0 590.3086690498209 0 590.3086690498209 0 26.338031200885155 0 0 0 0.5 0 0 0 EP{M(Oxidation (M))|F} 2.9356 - 15 + NaN NaN 98166.2 NaN 21658 5185 26844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26846 104.95 NaN 78644 35 0 9498.1 0.261 + 13647 KYPENFFLL 9 32 585.8130991239275 1169.6116453146549 2 586.3147583007812 MULTI HCD FTMS 0 0 0 26844 14125.7255859375 0.4258885668455244 21 -0.1940460205078125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 28.812 0 0 2.4634 0 0 778.362596580275 0 778.362596580275 0 15.612431371158733 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.4634 + + 10 NaN NaN 108600.9 NaN 21659 5185 26844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26847 104.96 NaN 38623 35 0 6082.1 0.261 + -1 ELGVLVCKLVK 11 31 629.3832405590953 NaN 0 629.0519409179688 PEAK HCD FTMS 0 0 0 26844 4781.017578125 0.28800365292978547 3 -0.03061676025390625 3 Carbamidomethyl (C) _ELGVLVC(Carbamidomethyl (C))KLVK_ REV__ENST00000470408.5_1_7:157015856-157060446:+|nuORF 1.3295316138638542 0.3383486451652214 2 M 1 -1 4.6041 0 0 0.36635 0 0 664.3965947883092 458.2904146783813 1122.6870094666906 0 0 0 0 0 0 0 0 0 M 0.36635 - 2 + NaN NaN 91835.6 NaN 21660 5185 26844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26849 104.97 NaN 40450 35 0 5039.1 0.411 -1 CGLCTMHNYL 10 39 606.2556366843903 NaN 0 606.2550659179688 PEAK HCD FTMS 0 0 0 26848 11334.357421875 0.713405108318942 -7 0.0697784423828125 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))GLCTMHNYL_ ENSG00000130487|ENST00000648057|KLHDC7B;KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;nc|ENSG00000130487|Q96G42|KLHDC7B 5.296884461304476 0.3356508900602619 2 {M(Oxidation (M))|F}N 2 -1 17.959 0 0 1.4836 0 0 655.2277517849931 291.13389002017817 946.3616418051713 0 0 0 0 0 0.8494850021680094 0 0 0 {M(Oxidation (M))|F}N 1.4836 - 4 + NaN NaN 104837.8 NaN 21661 5186 26848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26852 104.98 NaN 115100 35 0 11291 0.327 + 13648 KYPENFFLL 9 28 585.8131285693574 1169.6117042055148 2 585.8140258789062 MULTI HCD FTMS 0 0 0 26851 17243.30078125 0.31651463735493446 -1 0.00701141357421875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.445 0 0 2.603 0 0 778.3611927716812 0 778.3611927716812 0 10.981362441963327 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.603 + + 27 NaN NaN 103625.9 NaN 21662 5188 26851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26853 104.99 NaN 64444 35 0 5336.1 0.261 + 16263 LQGENWLSW 9 39 566.7755685593719 1131.5365841855437 2 567.2779541015625 MULTI HCD FTMS 0 0 0 26851 11985.7119140625 0.38718041383430085 22 -0.20163726806640625 2 Unmodified _LQGENWLSW_ ENST00000592790.1_1_17:57917110-57917269:+|nuORF 5.731851221503515 0.3075653528928475 2 SW 2 7 25.969 0 0 2.295 0 0 840.4151354800306 0 840.4151354800306 0 5 0 0 0 0.5 0 0 0 + SW 2.295 + + 9 NaN NaN 118083.3 NaN 21663 5188 26851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26854 104.99 NaN 36070 35 0 5343.5 0.261 + 35983 YYWCIPES 8 27 530.7255859375 NaN 0 530.7255859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _YYWCIPES_ ENSG00000112499|ENST00000366953|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2 0.7936320650641473 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 7 3.0989 0 0 0.29251 0 0 749.471053660353 146.90598474674064 896.3770384070937 0 0 0 0 0 0 0 0 0 + C(Carbamidomethyl (C)) 0.29251 + + 1 + NaN NaN 94868.5 NaN 21664 5188 26851 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26856 104.99 NaN 143930 35 0 31182 0.411 -1 0 35 536.1628580575579 535.1555815909578 1 538.1620483398438 MULTI HCD FTMS 0 0 0 26855 50761.109375 0.5709465515556646 -37 0.3336029052734375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 132887.5 NaN 21665 5189 26855 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26858 105 NaN 256250 35 0 53380 0.327 + 11313 IYLTFPVAMF 10 35 601.3200155283677 1200.6254781235352 2 601.3201904296875 MULTI HCD FTMS 0 0 0 26857 57573.48046875 0.18767715529584125 15 -0.1305084228515625 1 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 71.13359017698441 0.016242133362018647 2 [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 10 0 + 72.937 0 0 6.0749 6.0749 93.771 0 0 0 4.884381005764311 72.45235939505172 4.884381005764311 72.936909460092 0 2.4247425010840047 0 0.805462187404089 0 + + [Y{I|L}]{I|L}T{M(Oxidation (M))|F}[VP]AM{M(Oxidation (M))|F} 6.0749 + + 64 NaN NaN 138701.8 NaN 21666 5190 26857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26859 105.01 NaN 263450 35 0 34861 0.261 + 27004 SYLPWFEVF 9 51 594.2924590443827 1186.5703651555652 2 594.2923583984375 MULTI HCD FTMS 0 0 0 26857 99122.9453125 0.46710806987150877 -14 0.12847137451171875 2 Unmodified _SYLPWFEVF_ DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion;DENND1A-NDUFA8|1|fusion;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A 62.57269311338072 0.013982455292112035 2 {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PW{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 9 0 + 76.476 0 0 6.4451 6.4451 94.427 0 0 0 7.147642715192504 69.48638135581298 7.147642715192504 76.47608139917317 0 2.1861818737241734 0 0 0 + + {[{M(Oxidation (M))|F}C]|[YS]}{I|L}PW{M(Oxidation (M))|F}EV{M(Oxidation (M))|F} 6.4451 + + 140 NaN NaN 133318.4 NaN 21667 5190 26857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26860 105.01 NaN 22554 35 0 3479.2 0.261 -1 FTIEECLIIF 10 18 642.8287963867188 NaN 0 642.8287963867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _FTIEEC(Carbamidomethyl (C))LIIF_ ENST00000546859.5_1_12:69979244-69981900:+|nuORF 6.2057823575117 0.3348729994311477 2 {I|L} 1 -1 6.9897 0 0 0.54452 0 0 165.0881897443374 1002.4704683893186 1167.558658133656 0 0 0 0 0 0 0 0 0 {I|L} 0.54452 + + 1 + NaN NaN 98883.9 NaN 21668 5190 26857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26862 105.01 NaN 199820 35 0 18267 0.411 + 31342 VWVPFIYSF 9 53 579.3049684279797 1156.5953839227593 2 579.8069458007812 MULTI HCD FTMS 0 0 0 26861 17027.798828125 0.018161980453748224 47 -0.42684173583984375 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 60.38955033654506 0.017036522530421875 2 {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YS{M(Oxidation (M))|F} 9 0 + 43.222 0 0 3.737 3.737 89.671 0 0 0 1.8078684183746674 33.78530614985209 1.8078684183746674 43.22228114217921 0 1.610924374808178 0 0 0 + + {[RE]|[WV]}V{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}YS{M(Oxidation (M))|F} 3.737 + + 59 NaN NaN 164434 NaN 21669 5191 26861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26864 105.02 NaN 31589 35 0 2517.5 0.412 + 16458 LSRLLWRRL 9 39 606.8889700343586 NaN 0 607.2108154296875 PEAK HCD FTMS 0 0 0 26863 6141.3515625 0.7109885268303668 1 -0.00756072998046875 1 Unmodified _LSRLLWRRL_ ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113524.8 NaN 21670 5192 26863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26866 105.03 NaN 165120 35 0 15495 0.327 + 31345 VWVPFIYSF 9 40 579.3049666310789 NaN 0 579.305419921875 PEAK HCD FTMS 0 0 0 26865 45204.859375 0.6239830200309628 -2 0.015289306640625 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 28.486842064014134 0.13043271994793734 2 SY 2 8 20.217 0 0 1.7479 0 0 165.0837358971201 738.398447557634 903.482183454754 0 0 0 0 0 0.9247425010840047 0 0 0 SY 1.7479 - 5 + NaN NaN 116984.4 NaN 21671 5193 26865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26867 105.03 NaN 75102 35 0 6674.2 0.261 + 13649 KYPENFFLL 9 32 585.8131285693574 1169.6117042055148 2 585.8126220703125 MULTI HCD FTMS 0 0 0 26865 36292.23828125 0.6661731871475246 4 -0.03743743896484375 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 20.969 0 0 1.7928 0 0 925.4294072369102 0 925.4294072369102 0 18.293037728310253 0 0 0 0 0 0 0 + {I|L}{I|L} 1.7928 + + 4 NaN NaN 106149.6 NaN 21672 5193 26865 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26869 105.04 NaN 151160 35 0 15828 0.411 + 2267 DLLGTWVF 8 55 475.7525932707211 949.4906336082422 2 475.75250244140625 MULTI HCD FTMS 0 0 0 26868 71350.4921875 0.35235311211208553 12 -0.105804443359375 1 Unmodified _DLLGTWVF_ ENSG00000109861|ENST00000227266|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENST00000533865.5_1_11:88068232-88070840:-|nuORF;ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC 60.38955033654506 0.06344887527228933 2 {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 8 0 + 61.164 0 0 6.4417 6.4417 94.128 0 0 0 1.9897000433601875 1.9897000433601875 1.9897000433601875 61.16373455765242 0 2.2302046884880937 1.3010299956639813 0.4247425010840047 0 + + {NN|[MP]|[D{I|L}]|[EV]}{I|L}{[SA]|[TG]}WV{M(Oxidation (M))|F} 6.4417 + + 54 NaN NaN 144374.8 NaN 21673 5194 26868 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26871 105.05 NaN 198850 35 0 83701 0.327 -1 VFVDLEPMVI 10 32 589.3121339995804 NaN 0 589.3125610351562 PEAK HCD FTMS 0 0 0 26870 127058.1484375 0.7766900105093616 6 -0.04979705810546875 1 Oxidation (M) _VFVDLEPM(Oxidation (M))VI_ ENST00000530835.1_1_11:90015825-90016947:+|nuORF 6.723162845929126 0.3344301934401713 2 V 1 -1 11.99 0 0 1.019 0 0 131.0956285131968 943.4223544629524 1074.5179829761491 0 0 0 0 0 0.5 0 0 0 V 1.019 + + 1 + NaN NaN 121021.8 NaN 21674 5195 26870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26872 105.05 NaN 46907 35 0 5700.6 0.261 + 2748 DWLKKRCF 8 34 548.2917907680475 NaN 0 548.2810668945312 PEAK HCD FTMS 0 0 0 26870 5147.59521484375 1 0 0 2 Unmodified _DWLKKRCF_ ENSG00000129151|ENST00000263182|BBOX1;ENST00000527505.1_1_11:27076962-27137060:+|nuORF 2.8892196856762586 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.63858 0 0 165.10315988135568 813.3621920221311 978.4653519034869 0 0 0 0 0 0 0 0 0 + {I|L} 0.63858 + + 1 + NaN NaN 101505.1 NaN 21675 5195 26870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26873 105.05 NaN 30243 35 0 4343.8 0.261 -1 MNYRLNRKM 9 28 642.3204345703125 NaN 0 642.3204345703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))M(Oxidation (M))NYRLNRKM_ ENST00000541490.5_1_12:26218009-26218048:+|nuORF 0.5247636613948944 0.2927039108006614 2 {I|L} 1 -1 6.9897 0 0 0.54495 0 0 164.0441680646498 1002.4522799127561 1166.496447977406 0 0 0 0 0 0 0 0 0 {I|L} 0.54495 + + 2 + NaN NaN 91261.6 NaN 21676 5195 26870 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26875 105.06 NaN 55022 35 0 5171.8 0.411 + 14532 LFDTLVNFF 9 45 558.293212890625 NaN 0 558.293212890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LFDTLVNFF_ ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 13.90604991867851 0.22786006501039813 2 {I|L}N 2 7 15.969 0 0 1.4328 0 0 575.3037329083999 309.1236971490844 884.4274300574843 0 0 0 0 0 0.5 0 0 0 {I|L}N 1.4328 - 7 + NaN NaN 130104.5 NaN 21677 5196 26874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26877 105.07 NaN 51700 35 0 4407.6 0.411 -1 0 49 511.38407544514706 NaN 0 511.3841857910156 PEAK HCD FTMS 0 0 0 26876 23101.591796875 0.5203157346481099 2 -0.014495849609375 1 NaN NaN 2 S{M(Oxidation (M))|F}{I|L} 3 -1 13.188 0 0 1.2919 0 0 132.26905313463163 538.2681978815061 670.5372510161378 0 0 0 0 0 0 0 0 0 S{M(Oxidation (M))|F}{I|L} 1.2919 - 10 + NaN NaN 109801.6 NaN 21678 5197 26876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26880 105.08 NaN 103890 35 0 7246.2 0.411 + -1 GFSALLCLHD 10 50 566.7748130698681 NaN 0 566.7750244140625 PEAK HCD FTMS 0 0 0 26879 5636.671875 0.1958946227497046 1 -0.0072174072265625 1 Carbamidomethyl (C) _GFSALLC(Carbamidomethyl (C))LHD_ REV__ENSG00000013523|ENST00000251089|ANGEL1 9.38312468134398 0.33215363477037435 2 S 1 -1 13.539 0 0 1.1965 0 0 204.09102973813646 837.3902793190958 1041.4813090572322 0 0 0 0 0 0.805462187404089 0 0 0 S 1.1965 + + 31 + NaN NaN 145736 NaN 21679 5199 26879 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26882 105.09 NaN 54272 35 0 6226.1 0.412 + 26922 SYLEHKTSMN 10 46 605.2832641601562 NaN 0 605.2832641601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SYLEHKTSMN_ ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76198560-76243086:+|nuORF;nc|ENSG00000119685|Q6EMB2-2|TTLL5 8.155526934196011 0.33320428830121973 2 {I|L} 1 9 16.99 0 0 1.4058 0 0 845.3730747541032 247.0720156305297 1092.445090384633 0 0 0 0 0 1 0 0 0 + {I|L} 1.4058 + + 24 + NaN NaN 107034 NaN 21680 5200 26881 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26884 105.1 NaN 273770 35 0 61721 0.411 + 348 AGWNAYIDNL 10 70 589.7773647742324 1177.5401766152647 2 589.7774047851562 MULTI HCD FTMS 0 0 0 26883 60715.12109375 0.24451927255510475 -19 0.1697998046875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 70.92866715596459 0.016484948974345597 2 NAY{I|L}DG{[VA]|[{I|L}G]} 8 5 47.829 0 0 4.0618 0 0 356.14729698727285 0 356.14729698727285 0 38.87640052032225 0 0 0 2.3494850021680094 0 0 0 NAY{I|L}DG{[VA]|[{I|L}G]} 4.0618 - 314 NaN NaN 187873.2 NaN 21681 5201 26883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26886 105.1 NaN 55130 35 0 5113.7 0.327 -1 IFQMNLYLN 9 31 586.2948485876814 NaN 0 586.3153076171875 PEAK HCD FTMS 0 0 0 26885 9803.9990234375 0.8048983427791259 1 -0.0094451904296875 1 Oxidation (M) _IFQM(Oxidation (M))NLYLN_ ENST00000472667.1_1_2:170355634-170355844:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 6.9897 0 0 0.59712 0 0 132.05870014752514 922.4109710632811 1054.4696712108062 0 0 0 0 0 0 0 0 0 {I|L} 0.59712 + + 2 + NaN NaN 101876 NaN 21682 5202 26885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26887 105.11 NaN 55539 35 0 9094 0.261 + 35563 YYHLFDIF 8 37 559.2721064490099 NaN 0 559.2715454101562 PEAK HCD FTMS 0 0 0 26885 11356.4931640625 0.4138996299228276 -6 0.0445098876953125 2 Unmodified _YYHLFDIF_ tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1 5.230669730166228 0.38822285293237185 2 {I|L} 1 7 5.4846 0 0 0.49121 0 0 576.2617899470448 424.17087732486567 1000.4326672719105 0 0 0 0 0 0 0 0 0 + {I|L} 0.49121 + + 1 + NaN NaN 110617.9 NaN 21683 5202 26885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26889 105.11 NaN 102090 35 0 9229.4 0.327 + 13838 KYPSPFFVF 9 39 566.297526503227 1130.580500073254 2 566.7989501953125 MULTI HCD FTMS 0 0 0 26888 16858.359375 0.5752292125282767 -29 0.2606201171875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 8.745405648335112 0.2847203663274469 2 V{M(Oxidation (M))|F} 2 7 19.464 0 0 1.7216 0 0 866.431752333946 0 866.431752333946 0 3.2660625688767198 0 0 0 0 0 0 0 + V{M(Oxidation (M))|F} 1.7216 + + 19 NaN NaN 110394.7 NaN 21684 5203 26888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26890 105.12 NaN 38314 35 0 5225.4 0.261 + -1 HNQMVCLMCF 10 30 621.2503051757812 NaN 0 621.2503051757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _HNQM(Oxidation (M))VCLMCF_ REV__ENSG00000055483|ENST00000449938|USP36 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100050 NaN 21685 5203 26888 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26892 105.12 NaN 94633 35 0 14201 0.327 -1 LKCIFYVF 8 25 566.2975691111761 NaN 0 566.297607421875 PEAK HCD FTMS 0 0 0 26891 20524.4140625 0.5880406241305437 -9 0.07611083984375 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LKC(Carbamidomethyl (C))IFYVF_ ENST00000544451.2_1_8:52730731-52730815:-|nuORF 2.302733041254933 0.38822285293237185 2 S 1 -1 5.4846 0 0 0.48511 0 0 203.1334550174709 837.3881929986936 1040.5216480161646 0 0 0 0 0 0 0 0 0 S 0.48511 - 3 + NaN NaN 105156.4 NaN 21686 5204 26891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26893 105.13 NaN 75155 35 0 9431.5 0.261 + 11314 IYLTFPVAMF 10 35 601.3200155283677 1200.6254781235352 2 601.318603515625 MULTI HCD FTMS 0 0 0 26891 35165.48046875 0.1146318979719962 29 -0.2799072265625 2 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 19.256988751693697 0.33098864134661865 2 {M(Oxidation (M))|F} 1 9 16.99 0 0 1.4151 0 0 563.2800832606972 487.2561129205688 1050.536196181266 0 0 0 0 0 1 0 0 0 + {M(Oxidation (M))|F} 1.4151 + + 7 + NaN NaN 106609.1 NaN 21687 5204 26891 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26895 105.13 NaN 236000 35 0 27782 0.327 + 34915 YSITICLIDF 10 49 594.3044549023223 NaN 0 594.29248046875 PEAK HCD FTMS 0 0 0 26894 6638.45751953125 0.9606751370292304 -1 0.00942230224609375 1 Unmodified _YSITICLIDF_ REV__ENSG00000181001|ENST00000641645|OR52N1 10.073929032068715 0.33156240198919784 2 VE{M(Oxidation (M))|F}WP{I|L} 6 -1 23.365 0 0 1.9691 0 0 165.10470938229167 247.0715273492797 412.1762367315714 0 0 0 0 0 0 0 0 0 VE{M(Oxidation (M))|F}WP{I|L} 1.9691 - 68 + NaN NaN 126656.8 NaN 21688 5205 26894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26896 105.14 NaN 67841 35 0 9362.4 0.261 + -1 ICLRRFDAL 9 37 582.3215045151355 NaN 0 582.3215942382812 PEAK HCD FTMS 0 0 0 26894 14540.96484375 0.27412907654741525 -2 0.01882171630859375 2 Carbamidomethyl (C) _IC(Carbamidomethyl (C))LRRFDAL_ REV__ENSG00000100029|ENST00000354694|PES1;REV__ENST00000466614.1_1_22:30983271-30987820:-|nuORF;REV__nc|ENSG00000100029|O00541-2|PES1 5.731851221503515 0.26747109115447115 2 {I|L} 1 -1 6.9897 0 0 0.6012 0 0 263.1548365675772 783.3740938775999 1046.5289304451771 0 0 0 0 0 0 0 0 0 {I|L} 0.6012 + + 3 + NaN NaN 90468.3 NaN 21689 5205 26894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26897 105.14 NaN 30665 35 0 4346.5 0.261 -1 RYYNKQCVL 9 24 622.3167742481044 NaN 0 622.3157958984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _RYYNKQC(Carbamidomethyl (C))VL_ KCNF1|p.R417C|1|0.19|ENSG00000162975|chr2:10913675-10913675|C/T|missense_variant 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98565.2 NaN 21690 5205 26894 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26899 105.14 NaN 45635 35 0 10241 0.411 + 35341 YWVILSGST 9 35 513.267425514823 NaN 0 513.2671508789062 PEAK HCD FTMS 0 0 0 26898 5298.8623046875 0.38013554484015216 1 -0.00768280029296875 1 Unmodified _YWVILSGST_ ENSG00000136828|ENST00000259351|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;NFIX-RALGPS1|1|fusion;NFIX-RALGPS1|3|fusion;NFIX-RALGPS1|4|fusion 2.0597508629832335 0.2852655770354268 2 W 1 8 2.7642 0 0 0.26981 0 0 488.2956409692959 347.1212557428344 835.4168967121303 0 0 0 0 0 0 0 0 0 + W 0.26981 + + 1 + NaN NaN 99557.9 NaN 21691 5206 26898 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26901 105.15 NaN 175810 35 0 31579 0.327 -1 0 58 467.62371447635707 1399.8493140292712 3 467.6239013671875 MULTI HCD FTMS 0 0 0 26900 69846.1015625 0.3585268858841729 -9 0.07793426513671875 1 NaN NaN 2 A 1 -1 6.9897 0 0 0.49932 0 0 633.3943102224338 692.4058931940061 1325.80020341644 0 0 0 0 0 0 0 0 0 A 0.49932 - 9 + NaN NaN 127802.5 NaN 21692 5207 26900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26902 105.16 NaN 25944 35 0 5707.1 0.261 + 9596 HSHCNDCCLNH 11 19 641.7291259765625 NaN 0 641.7291259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _HSHCNDCCLNH_ REV__ENSG00000186501|ENST00000374076|TMEM222;REV__ENST00000464720.5_1_1:27657613-27661954:+|nuORF;REV__ENST00000470223.1_1_1:27660299-27660773:+|nuORF;REV__ENST00000471456.1_1_1:27660299-27661954:+|nuORF;REV__ENST00000486082.5_1_1:27657613-27661179:+|nuORF;REV__nc|ENSG00000186501|Q9H0R3-2|TMEM222 0 0.34212014346876374 2 V 1 -1 3.0989 0 0 0.24183 0 0 520.8001056623062 658.5526217096311 1179.3527273719374 0 0 0 0 0 0 0 0 0 V 0.24183 - 1 + NaN NaN 105037.5 NaN 21693 5207 26900 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26904 105.16 NaN 55429 35 0 6127.6 0.327 -1 0 39 496.2752886912459 495.26801222464593 1 496.2752380371094 MULTI HCD FTMS 0 0 0 26903 66288.21875 0.23959833489321317 26 -0.24686431884765625 1 NaN NaN 2 Q 1 -1 12.474 0 0 2.5187 0 0 349.1997271678084 0 349.1997271678084 0 12.474250108400469 0 0 0 0 0 0 0 Q 2.5187 - 2 + NaN NaN 119861.3 NaN 21694 5208 26903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26905 105.17 NaN 82838 35 0 10678 0.261 + 11315 IYLTFPVAMF 10 42 601.3200155283677 1200.6254781235352 2 601.3203735351562 MULTI HCD FTMS 0 0 0 26903 17993.208984375 0.058653988769430225 32 -0.30016326904296875 2 Unmodified _IYLTFPVAMF_ ENSG00000229833|ENST00000594797|PET100;ENST00000601829.1_1_19:7694719-7695635:+|nuORF 14.838274106304384 0.3723198072575719 2 M{M(Oxidation (M))|F} 2 8 14.693 0 0 1.2238 0 0 904.5106068341812 0 904.5106068341812 0 2.7030375612038426 0 0 0 0 0 0 0 + M{M(Oxidation (M))|F} 1.2238 + + 11 NaN NaN 105037.3 NaN 21695 5208 26903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26906 105.17 NaN 27550 35 0 3312.1 0.261 -1 PYMCAYKLVT 10 25 623.3026335835808 NaN 0 623.2923583984375 PEAK HCD FTMS 0 0 0 26903 4238.25634765625 0.4054715909892472 -1 0.010406494140625 3 Carbamidomethyl (C) _PYMC(Carbamidomethyl (C))AYKLVT_ ENSG00000174238|ENST00000313486|PITPNA 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100706.6 NaN 21696 5208 26903 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26908 105.18 NaN 102160 35 0 9494.3 0.411 + -1 PVMWSLSLF 9 47 548.2808132107748 1094.5470734883495 2 548.281005859375 MULTI HCD FTMS 0 0 0 26907 76436.5078125 0.7627473386913444 2 -0.01520538330078125 1 Oxidation (M) _PVM(Oxidation (M))WSLSLF_ REV__TNXB|p.S2859F|1|0.5|ENSG00000168477|chr6:32053603-32053603|G/A|missense_variant 18.13498045792455 0.20367413111508956 2 TW{I|L}{M(Oxidation (M))|F} 4 -1 44.909 0 0 4.103 0 0 529.2434413313404 0 529.2434413313404 0 35.9568378181978 0 0 0 0.8494850021680094 0 0.6861818737241735 0 TW{I|L}{M(Oxidation (M))|F} 4.103 - 69 NaN NaN 115104.6 NaN 21697 5209 26907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26910 105.18 NaN 33567 35 0 3061.8 0.411 -1 FTIEECLIIF 10 43 642.8290405273438 NaN 0 642.8290405273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _FTIEEC(Carbamidomethyl (C))LIIF_ ENST00000546859.5_1_12:69979244-69981900:+|nuORF 6.2057823575117 0.3348729994311477 2 {I|L}{I|L} 2 -1 9.464 0 0 0.73727 0 0 165.0772579145726 889.3764132135374 1054.45367112811 0 0 0 0 0 0 0 0 0 {I|L}{I|L} 0.73727 + + 3 + NaN NaN 120681 NaN 21698 5210 26909 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26912 105.19 NaN 150830 35 0 15528 0.327 + 31346 VWVPFIYSF 9 43 579.3049666310789 NaN 0 579.3053588867188 PEAK HCD FTMS 0 0 0 26911 8051.0966796875 0.1111329111562503 16 -0.16229248046875 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 28.486842064014134 0.13043271994793734 2 SY 2 8 19.024 0 0 1.6448 0 0 165.08062310415136 738.3966976988655 903.4773208030169 0 0 0 0 0 0.805462187404089 0 0 0 SY 1.6448 - 7 + NaN NaN 122152 NaN 21699 5211 26911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26913 105.19 NaN 79219 35 0 6627.9 0.261 -1 MPMAELISNY 10 41 600.7685742260169 1199.5225955188337 2 600.768310546875 MULTI HCD FTMS 0 0 0 26911 19015.087890625 0.3782412002239985 -11 0.1017913818359375 2 2 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))AELISNY_ tr|U7SV03|U7SV03_FUSNUDUF340domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01461PE=4SV=1 4.897010918128616 0.4493830473644964 2 {I|L} 1 -1 16.237 0 0 1.3536 0 0 704.2933302373868 379.1222323053344 1083.4155625427213 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.3536 + + 12 + NaN NaN 105930 NaN 21700 5211 26911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26914 105.2 NaN 31320 35 0 4633.4 0.261 + -1 KDDWVTLDGC 10 25 604.7663707198654 1207.5181885065308 2 606.2738037109375 MULTI HCD FTMS 0 0 0 26911 5876.548828125 0.3045792680322016 -6 0.0584564208984375 3 Carbamidomethyl (C) _KDDWVTLDGC(Carbamidomethyl (C))_ REV__ENSG00000196151|ENST00000359774|WDSUB1;REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 112541.5 NaN 21701 5211 26911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26916 105.2 NaN 191740 35 0 21713 0.411 + 3631 ELESFNLNDI 10 79 597.2857745070769 NaN 0 597.2696533203125 PEAK HCD FTMS 0 0 0 26915 5266.62109375 0.6214985377033749 1 -0.00769805908203125 1 Unmodified _ELESFNLNDI_ REV__tr|U7SUV0|U7SUV0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01017PE=4SV=1 17.11289562659939 0.30402175129113823 2 NAY{I|L}D 5 -1 23.593 0 0 1.9784 0 0 371.1649805553662 242.11390100650627 613.2788815618725 0 0 0 0 0 0 0 0.6549471895720985 0.28872548999643577 NAY{I|L}D 1.9784 - 182 + NaN NaN 151095.2 NaN 21702 5212 26915 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26918 105.21 NaN 213910 35 0 33034 0.411 + 9724 HWMFVMDNI 9 76 596.7689833008355 1191.523413668471 2 596.7664184570312 MULTI HCD FTMS 0 0 0 26917 46807.69921875 0.9028664957946172 -5 0.04805755615234375 1 Unmodified _HWMFVMDNI_ MAP3K15|p.A1115V|1|0.2|ENSG00000180815|chrX:19371015-19371015|G/A|missense_variant 32.30548876998284 0.10066689432505688 2 {I|L}DN{I|L} 4 6 47.295 0 0 3.9693 0 0 718.2673036543479 0 718.2673036543479 0 35.86819398339564 0 0 0 1.1861818737241734 0 0 0.3494850021680094 {I|L}DN{I|L} 3.9693 - 62 NaN NaN 175217.4 NaN 21703 5213 26917 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26920 105.22 NaN 570170 35 0 45383 0.327 + 349 AGWNAYIDNL 10 87 589.7773647742324 1177.5401766152647 2 589.7774047851562 MULTI HCD FTMS 0 0 0 26919 134009.578125 0.5396995668993997 -6 0.05556488037109375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 135.86342318000737 7.994840703560577E-06 2 NAY{I|L}DN{I|L} 7 3 90.231 0 0 7.6627 0 0 356.14847037749627 0 356.14847037749627 0 55.808458725938465 0 0 0 2.778659694992122 0 1.6624379954164592 1.7104093769761874 + NAY{I|L}DN{I|L} 7.6627 + + 2540 + NaN NaN 171523.7 NaN 21704 5214 26919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26921 105.22 NaN 42325 35 0 8641.2 0.262 + 19258 NLFRAPYF 8 31 514.2711791992188 NaN 0 514.2711791992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _NLFRAPYF_ ENST00000514704.5_1_4:146018956-146019220:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85258.2 NaN 21705 5214 26919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26923 105.23 NaN 52068 35 0 5229.9 0.411 + 13650 KYPENFFLL 9 46 585.8131285693574 1169.6117042055148 2 585.81298828125 MULTI HCD FTMS 0 0 0 26922 40501.1796875 0.7434316876949363 26 -0.24230194091796875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3628407209 0 778.3628407209 0 11.73393743112328 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 23 NaN NaN 112997.7 NaN 21706 5215 26922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26925 105.24 NaN 41891 35 0 13556 0.327 + 14344 LDVCIFNFF 9 22 559.2720850201375 NaN 0 559.2720336914062 PEAK HCD FTMS 0 0 0 26924 4722.822265625 0.2662114368912265 1 -0.00946807861328125 1 Unmodified _LDVCIFNFF_ ENST00000430246.6_1_14:21702260-21731069:-|nuORF 3.5964929083625545 0.27781873954207675 2 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.35641 0 0 543.2755410346125 423.1658114068969 966.4413524415095 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.35641 + + 2 + NaN NaN 92317.9 NaN 21707 5216 26924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26926 105.24 NaN 32877 35 0 6001.8 0.261 + -1 YNIKHFFMK 9 25 622.3167742481044 NaN 0 622.318115234375 PEAK HCD FTMS 0 0 0 26924 8395.07421875 0.44265902434086124 2 -0.02220916748046875 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 852.4287317464056 274.0830172174438 1126.5117489638494 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 114219.6 NaN 21708 5216 26924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26928 105.24 NaN 137030 35 0 15567 0.327 + 31343 VWVPFIYSF 9 42 579.3049617761661 1156.5953706191322 2 579.2927856445312 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 23.1484247019978 0.1603590852062899 2 Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3 6 18.512 0 0 1.6006 0 0 741.4217210166785 0 741.4217210166785 0 12.051324621308803 0 0 0 0.805462187404089 0 0 0 + Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.6006 + + 6 NaN NaN 113691.9 NaN 21709 5217 26927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26929 105.25 NaN 122510 35 0 45083 0.262 -1 0 46 473.2992982570718 1416.8760653714155 3 473.6338195800781 MULTI HCD FTMS 0 0 0 26927 22122.48828125 0.4925620255921287 -9 0.08200836181640625 2 NaN NaN 2 P 1 -1 4.6041 0 0 0.32495 0 0 721.444499064578 595.3493746393186 1316.7938737038967 0 0 0 0 0 0 0 0 0 P 0.32495 - 7 + NaN NaN 99683.8 NaN 21710 5217 26927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26930 105.25 NaN 77760 35 0 7779.3 0.261 + 21896 QDEVIEKSW 9 33 567.2775331147722 NaN 0 567.2775268554688 PEAK HCD FTMS 0 0 0 26927 19340.7890625 0.5837608751245487 -4 0.0339508056640625 3 Unmodified _QDEVIEKSW_ NRDE2|p.M339Ifs*37|1|0.26|ENSG00000119720|chr14:90303114-90303115|-/A|frameshift_variant 3.944395688203298 0.27613285122220627 2 S 1 8 6.9897 0 0 0.61717 0 0 841.4189580670376 201.06662927799064 1042.4855873450283 0 0 0 0 0 0 0 0 0 + S 0.61717 + + 4 + NaN NaN 96979.6 NaN 21711 5217 26927 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26932 105.26 NaN 105250 35 0 17179 0.327 + 13839 KYPSPFFVF 9 43 566.297526503227 1130.580500073254 2 566.2980346679688 MULTI HCD FTMS 0 0 0 26931 29200.896484375 0.7377727727253527 -8 0.0746307373046875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 28.583 0 0 2.5282 0 0 866.4313106735909 0 866.4313106735909 0 18.1259189508755 0 0 0 0.7614393726401688 0 0 0 + V{M(Oxidation (M))|F} 2.5282 + + 13 NaN NaN 109247.2 NaN 21712 5218 26931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26933 105.26 NaN 89782 35 0 16100 0.261 -1 EIVKMVMVSL 10 38 582.8224135351069 1163.6302741370137 2 582.7655639648438 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _EIVKMVM(Oxidation (M))VSL_ XRCC5|p.I213V|1|0.22|ENSG00000079246|chr2:216122207-216122207|A/G|missense_variant 1.4819007175156935 0.4674597685733628 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.60068 0 0 699.4044453582313 314.1687410943969 1013.5731864526283 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60068 + + 5 + NaN NaN 123424.6 NaN 21713 5218 26931 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26935 105.27 NaN 70281 35 0 14922 0.327 + -1 MWPRVDHQKC 10 40 452.88037077474917 NaN 0 452.8808288574219 PEAK HCD FTMS 0 0 0 26934 19806.064453125 0.6216092393398822 1 -0.00943756103515625 1 Carbamidomethyl (C) _MWPRVDHQKC(Carbamidomethyl (C))_ REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000157106|Q96Q15-2|SMG1;REV__nc|ENSG00000157106|Q96Q15-3|SMG1;REV__nc|ENSG00000157106|Q96Q15-4|SMG1;REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;REV__SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100226.2 NaN 21714 5219 26934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26936 105.27 NaN 61188 35 0 7633 0.261 + -1 VKLMWCLAQC 10 37 436.87988843290793 1307.6178358989239 3 437.2144470214844 MULTI HCD FTMS 0 0 0 26934 37095.32421875 0.6775172557663218 -7 0.063995361328125 2 2 Carbamidomethyl (C) _VKLMWC(Carbamidomethyl (C))LAQC(Carbamidomethyl (C))_ REV__ENST00000563969.5_1_16:67311562-67311856:+|nuORF 0.776531954647913 0.4711933975711956 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 102806.6 NaN 21715 5219 26934 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26938 105.28 NaN 285430 35 0 27751 0.327 + 21272 PRPGRPRRPRR 11 72 467.62371447635707 1399.8493140292712 3 467.6236877441406 MULTI HCD FTMS 0 0 0 26937 124102.6640625 0.6370311396183413 4 -0.046173095703125 1 Unmodified _PRPGRPRRPRR_ ENST00000296350.9_1_3:196729451-196730141:-|nuORF 1.3296431237094175 0.4130893034510334 2 A 1 11 6.2591 0 0 0.44712 0 0 765.4721848146748 560.3282564752561 1325.8004412899309 0 0 0 0 0 0.5 0 0 0 A 0.44712 - 9 + NaN NaN 130023.2 NaN 21716 5220 26937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26939 105.28 NaN 203310 35 0 30559 0.261 + -1 QMVCAELDNL 10 54 596.7689833008355 1191.523413668471 2 596.767578125 MULTI HCD FTMS 0 0 0 26937 46892.359375 0.9044994924999166 2 -0.029022216796875 2 Carbamidomethyl (C) _QMVC(Carbamidomethyl (C))AELDNL_ REV__ENSG00000120235|ENST00000380210|IFNA6;REV__ENSG00000197919|ENST00000276927|IFNA1;REV__ENSG00000233816|ENST00000610660|IFNA13 13.614867670302875 0.3837631382804675 2 {I|L}[DN]{I|L} 4 -1 17.479 0 0 1.467 0 0 718.2704110801218 0 718.2704110801218 0 11.994784489444967 0 0 0 0.7302046884880937 0 0 0 {I|L}[DN]{I|L} 1.467 + + 20 NaN NaN 119526.4 NaN 21717 5220 26937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26940 105.28 NaN 60446 35 0 7947.3 0.261 + 6904 FPVELIDFAL 10 30 582.3211820469704 NaN 0 582.3209228515625 PEAK HCD FTMS 0 0 0 26937 14400.0751953125 0.42002400792007283 4 -0.046173095703125 3 Unmodified _FPVELIDFAL_ ENSG00000215251|ENST00000380266|FASTKD5 5.731851221503515 0.33527861879838866 2 A 1 9 6.9897 0 0 0.6012 0 0 131.09738199703025 957.4711188795034 1088.5685008765336 0 0 0 0 0 0 0 0 0 + A 0.6012 + + 1 + NaN NaN 97558 NaN 21718 5220 26937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26941 105.29 NaN 74226 35 0 12539 0.262 + 6539 FPLAPLFAL 9 34 494.79677292359213 987.5789929139843 2 494.7965393066406 MULTI HCD FTMS 0 0 0 26937 30056.291015625 0.6793290081319131 -6 0.0582275390625 4 Unmodified _FPLAPLFAL_ ENSG00000131620|ENST00000355303|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF;nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1 9.347437153973935 0.2795965555214564 2 A{I|L} 2 7 25.969 0 0 2.6296 0 0 785.4435221784715 0 785.4435221784715 0 25.255762612236904 0 0 0 0.5 0 0 0 + A{I|L} 2.6296 + + 5 NaN NaN 99714.5 NaN 21719 5220 26937 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26943 105.29 NaN 202480 35 0 30521 0.327 + -1 QMVCAELDNL 10 43 596.7689833008355 1191.523413668471 2 596.7673950195312 MULTI HCD FTMS 0 0 0 26942 34801.31640625 0.6712772282591538 3 -0.03009033203125 1 Carbamidomethyl (C) _QMVC(Carbamidomethyl (C))AELDNL_ REV__ENSG00000120235|ENST00000380210|IFNA6;REV__ENSG00000197919|ENST00000276927|IFNA1;REV__ENSG00000233816|ENST00000610660|IFNA13 10.150570793230772 0.4161670024087991 2 {I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 4 -1 18.716 0 0 1.5708 0 0 718.2749833479617 0 718.2749833479617 0 13.231909543645202 0 0 0 1 0 0 0.3054621874040891 {I|L}V{[QD]|[EN]|[WG]|[KD]|[RS]} 1.5708 - 14 + NaN NaN 113351 NaN 21720 5221 26942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26944 105.3 NaN 77410 35 0 33127 0.261 -1 0 28 625.388218411555 624.380941944955 1 625.3886108398438 MULTI HCD FTMS 0 0 0 26942 34877.05859375 0.6115401807087721 -5 0.05733489990234375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102563.8 NaN 21721 5221 26942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26945 105.3 NaN 39038 35 0 8628.5 0.261 + 20775 PGPRWRRRQ 9 14 604.8495503440236 NaN 0 604.849365234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PGPRWRRRQ_ ENST00000233535.8_1_2:27481772-27486087:-|nuORF 1.844237919475145 0.28630992268396543 2 {I|L} 1 9 5.4846 0 0 0.45414 0 0 360.332937502697 731.2370089166624 1091.5699464193594 0 0 0 0 0 0 0 0 0 {I|L} 0.45414 - 3 + NaN NaN 100567.5 NaN 21722 5221 26942 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26947 105.31 NaN 37437 35 0 4065.4 0.411 + 19441 NPQSLIQPAF 10 46 557.798583984375 NaN 0 557.798583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NPQSLIQPAF_ REV__ENSG00000117523|ENST00000647382|PRRC2C;REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C;REV__nc|ENSG00000117523|Q9Y520-5|PRRC2C;REV__nc|ENSG00000117523|Q9Y520|PRRC2C 5.731851221503515 0.33527861879838866 2 C{I|L} 2 -1 7.4743 0 0 0.67119 0 0 471.3052838748445 423.16404138736567 894.4693252622102 0 0 0 0 0 0 0 0 0 C{I|L} 0.67119 - 3 + NaN NaN 124091 NaN 21723 5222 26946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26949 105.31 NaN 55811 35 0 5626.3 0.327 + -1 PVMWSLSLF 9 32 548.2808692780351 NaN 0 548.2813720703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _PVM(Oxidation (M))WSLSLF_ REV__TNXB|p.S2859F|1|0.5|ENSG00000168477|chr6:32053603-32053603|G/A|missense_variant 12.531546534597751 0.23452071659215576 2 {I|L}WT 3 -1 22.619 0 0 2.0666 0 0 165.07781588228687 526.2195528619749 691.2973687442618 0 0 0 0 0 0.8807196863200843 0 0 0 {I|L}WT 2.0666 - 21 + NaN NaN 119436.6 NaN 21724 5223 26948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26950 105.32 NaN 50792 35 0 5798.9 0.261 + -1 HLICPCCGAGL 11 36 600.7685742260169 1199.5225955188337 2 600.768798828125 MULTI HCD FTMS 0 0 0 26948 29632.265625 0.5894342313759316 1 -0.0094451904296875 2 2 Carbamidomethyl (C) _HLICPC(Carbamidomethyl (C))C(Carbamidomethyl (C))GAGL_ REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF 3.5964929083625545 0.40314767035630406 2 {I|L} 1 -1 10.485 0 0 0.87406 0 0 382.14852432918366 701.2705172174436 1083.4190415466273 0 0 0 0 0 0.5 0 0 0 {I|L} 0.87406 + + 7 + NaN NaN 98643.9 NaN 21725 5223 26948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26952 105.32 NaN 143010 35 0 26683 0.327 -1 SGEWVCLVGGE 11 39 596.7689833008355 1191.523413668471 2 597.2700805664062 MULTI HCD FTMS 0 0 0 26951 26318.80859375 0.5361438328994522 7 -0.05782318115234375 1 Carbamidomethyl (C) _SGEWVC(Carbamidomethyl (C))LVGGE_ ENST00000601150.5_1_19:59059168-59060232:+|nuORF 8.155526934196011 0.3831532958467648 2 {I|L} 1 -1 15.044 0 0 1.2626 0 0 360.16805257842583 715.2502153214717 1075.4182678998975 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.2626 + + 14 + NaN NaN 107791.3 NaN 21726 5224 26951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26953 105.33 NaN 40793 35 0 6706.9 0.261 -1 CKQMTKMHE 9 27 604.7663707198654 1207.5181885065308 2 604.7638549804688 MULTI HCD FTMS 0 0 0 26951 5587.60986328125 0.14709498515093805 10 -0.0868988037109375 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))KQMTKM(Oxidation (M))HE_ ENSG00000143952|ENST00000272322|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-5|VPS54 1.6526216038709556 0.33848895094777925 2 C(Carbamidomethyl (C)){[TV]|[{I|L}S]}{I|L} 4 -1 14.693 0 0 1.2168 0 0 0 731.2418917291624 731.2418917291624 14.69273760456403 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)){[TV]|[{I|L}S]}{I|L} 1.2168 - 2 + NaN NaN 95494.8 NaN 21727 5224 26951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26954 105.33 NaN 43062 35 0 6079.2 0.261 + 35713 YYLKHKFL 8 38 556.3189290457304 NaN 0 556.319091796875 PEAK HCD FTMS 0 0 0 26951 4181.81103515625 0.3138905648502487 1 -0.01274871826171875 3 Unmodified _YYLKHKFL_ ENSG00000165156|ENST00000395571|ZHX1 0.7936320650641473 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.62935 0 0 166.084749646156 828.4318941705686 994.5166438167246 0 0 0 0 0 0 0 0 0 + {I|L} 0.62935 + + 2 + NaN NaN 107664.4 NaN 21728 5224 26951 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26956 105.34 NaN 116630 35 0 15672 0.327 + 31344 VWVPFIYSF 9 33 579.3049617761661 1156.5953706191322 2 579.2929077148438 MULTI HCD FTMS 0 0 0 26955 14293.09765625 0.41717046281903447 -4 0.04283905029296875 1 Unmodified _VWVPFIYSF_ ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF 23.1484247019978 0.1603590852062899 2 Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 3 6 18.072 0 0 1.5625 0 0 741.4202999159577 0 741.4202999159577 0 9.119543704721595 0 0 0 0.7614393726401688 0 0 0 + Y{[MC]|[{M(Oxidation (M))|F}S]|[YA]|[HP]} 1.5625 + + 7 NaN NaN 99775.8 NaN 21729 5225 26955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26957 105.34 NaN 22467 35 0 2258.5 0.261 + -1 KVFLLRMFAP 10 24 619.3603515625 NaN 0 619.3603515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _KVFLLRM(Oxidation (M))FAP_ REV__ENST00000511325.1_1_3:128623240-128628375:+|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89904.3 NaN 21730 5225 26955 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26959 105.34 NaN 333830 35 0 23660 0.411 + 350 AGWNAYIDNL 10 88 589.7773647742324 1177.5401766152647 2 589.777587890625 MULTI HCD FTMS 0 0 0 26958 207369.109375 0.8351419360010894 6 -0.044586181640625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 162.31443362245884 8.073259504239566E-11 2 GWNAY{I|L}DN{I|L} 9 1 104.91 0 0 8.9089 0 0 113.04921285139297 0 113.04921285139297 0 62.68132431794811 0 0 0 2.778659694992122 0 2.1307196863200843 2.416386562212267 + GWNAY{I|L}DN{I|L} 8.9089 + + 3380 + NaN NaN 200098.3 NaN 21731 5226 26958 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26961 105.35 NaN 49068 35 0 4681.3 0.412 -1 RRLKMVVKTF 10 40 647.3937395336571 NaN 0 647.3934326171875 PEAK HCD FTMS 0 0 0 26960 30579.576171875 0.7365623964728728 19 -0.16585540771484375 1 Oxidation (M) _RRLKM(Oxidation (M))VVKTF_ ENSG00000083642|ENST00000315596|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000083642|Q9NTI5-3|PDS5B;nc|ENSG00000083642|Q9NTI5-4|PDS5B 3.2813086475875832 0.33737594360511275 2 V 1 -1 5.4846 0 0 0.42425 0 0 768.4147240850892 422.2693270318969 1190.6840511169862 0 0 0 0 0 0 0 0 0 V 0.42425 + + 2 + NaN NaN 125886.3 NaN 21732 5227 26960 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26966 105.38 NaN 120570 35 0 34368 0.327 -1 KKCHQCVETI 10 41 434.88222977264707 NaN 0 434.8822326660156 PEAK HCD FTMS 0 0 0 26965 78672.7109375 0.8975016742194447 -116 1.1093673706054688 1 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104834.6 NaN 21733 5231 26965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26967 105.38 NaN 25037 35 0 4729.7 0.261 -1 ESLEMERWF 9 21 621.7752092795685 NaN 0 621.3135986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _ESLEM(Oxidation (M))ERWF_ ENSG00000136573|ENST00000259089|BLK 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98809 NaN 21734 5231 26965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26969 105.39 NaN 84051 35 0 10347 0.326 + 13651 KYPENFFLL 9 32 585.8131285693574 1169.6117042055148 2 585.8134155273438 MULTI HCD FTMS 0 0 0 26968 30494.6328125 0.5597534815617031 43 -0.376708984375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 14.405379775768559 0.2358970535022398 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3607044904312 0 778.3607044904312 0 30.484550065040278 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 34 NaN NaN 115381.2 NaN 21735 5232 26968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26970 105.39 NaN 106180 35 0 10556 0.261 + 13840 KYPSPFFVF 9 38 566.297526503227 1130.580500073254 2 566.29833984375 MULTI HCD FTMS 0 0 0 26968 31700.91796875 0.8009368534373005 6 -0.05129241943359375 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.20357593197100715 2 V{M(Oxidation (M))|F} 2 7 27.519 0 0 2.434 0 0 866.4322987287125 0 866.4322987287125 0 13.539171939081172 0 0 0 0.805462187404089 0 0 0 + V{M(Oxidation (M))|F} 2.434 + + 42 NaN NaN 109390.5 NaN 21736 5232 26968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26971 105.4 NaN 94470 35 0 17788 0.261 -1 MYIIPVVLF 9 50 555.8171109627792 NaN 0 555.8170166015625 PEAK HCD FTMS 0 0 0 26968 10401.3876953125 0.4920225612063588 6 -0.05129241943359375 3 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ ENSG00000161671|ENST00000334976|EMC10 14.581692164780916 0.22376707489839515 2 {I|L} 1 -1 11.237 0 0 1.0127 0 0 165.08041150193554 828.4333099504418 993.5137214523772 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 1.0127 + + 1 + NaN NaN 102710.1 NaN 21737 5232 26968 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26974 105.41 NaN 70679 35 0 7013.4 0.327 + -1 SAKLCLLAL 9 34 494.79677292359213 987.5789929139843 2 494.7969665527344 MULTI HCD FTMS 0 0 0 26973 15015.0615234375 0.33936878127956016 7 -0.0604705810546875 1 Carbamidomethyl (C) _SAKLC(Carbamidomethyl (C))LLAL_ REV__ENST00000341511.10_1_9:139901839-139902202:-|nuORF 6.723162845929126 0.3000504726104499 2 A{I|L} 2 -1 25.217 0 0 2.5534 0 0 785.4450918826667 0 785.4450918826667 0 25.21652514092061 0 0 0 0.4247425010840047 0 0 0 A{I|L} 2.5534 + + 4 NaN NaN 114433.8 NaN 21738 5234 26973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26975 105.41 NaN 68858 35 0 12325 0.261 + -1 LIWQMAAL 8 32 481.2619107427892 NaN 0 481.3364562988281 PEAK HCD FTMS 0 0 0 26973 3687.065185546875 0.9484166062061418 -1 0.0071868896484375 2 Oxidation (M) _LIWQM(Oxidation (M))AAL_ REV__ENSG00000197429|ENST00000396478|IPP;REV__IPP|p.F201L|1|0.27|ENSG00000197429|chr1:45741022-45741022|G/C|missense_variant;REV__nc|ENSG00000197429|Q9Y573-2|IPP 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113319.6 NaN 21739 5234 26973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26977 105.42 NaN 117570 35 0 36655 0.411 + 27648 TAISLFYEL 9 52 528.7841647929549 NaN 0 528.7838745117188 PEAK HCD FTMS 0 0 0 26976 13961.7646484375 0.14902620646120002 2 -0.01520538330078125 1 Unmodified _TAISLFYEL_ EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant;ENSG00000167658|ENST00000309311|EEF2 13.90604991867851 0.22786006501039813 2 {M(Oxidation (M))|F} 1 8 15.485 0 0 1.467 0 0 485.2847350849914 420.17700204702714 905.4617371320185 0 0 0 0 0 0.8494850021680094 0 0 0 + {M(Oxidation (M))|F} 1.467 + + 6 + NaN NaN 127953.9 NaN 21740 5235 26976 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26979 105.43 NaN 38906 35 0 3399.7 0.411 + 33724 YLDHSILLCS 10 44 582.2905978331229 NaN 0 582.32080078125 PEAK HCD FTMS 0 0 0 26978 17071.54296875 0.7823779998990322 6 -0.05622100830078125 1 Unmodified _YLDHSILLCS_ ENSG00000136052|ENST00000258538|SLC41A2 8.745405648335112 0.33269943387702366 2 {I|L} 1 9 16.99 0 0 1.4614 0 0 615.2667061522967 431.19233118228755 1046.4590373345843 0 0 0 0 0 1 0 0 0 + {I|L} 1.4614 + + 11 + NaN NaN 114383.5 NaN 21741 5236 26978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26982 105.44 NaN 77480 35 0 8172.3 0.327 + 28786 TTLGEVTE 8 43 425.2145514390166 NaN 0 425.2145690917969 PEAK HCD FTMS 0 0 0 26981 62459.8828125 0.7261956406815945 -32 0.29634857177734375 1 Unmodified _TTLGEVTE_ REV__ENSG00000006071|ENST00000389817|ABCC8;REV__nc|ENSG00000006071|Q09428-2|ABCC8 2.302733041254933 0.38822285293237185 2 N 1 -1 0.9691 0 0 0.11422 0 0 442.23869042510506 289.10544763736567 731.3441380624707 0 0 0 0 0 0 0 0 0 N 0.11422 - 1 + NaN NaN 95923.1 NaN 21742 5238 26981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26983 105.44 NaN 67231 35 0 30845 0.261 -1 0 23 625.388218411555 624.380941944955 1 625.3882446289062 MULTI HCD FTMS 0 0 0 26981 33220.62890625 0.5824960654287453 12 -0.1049652099609375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115205.4 NaN 21743 5238 26981 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26985 105.45 NaN 124280 35 0 16379 0.327 -1 0 51 578.9579415872141 3467.7039907236845 6 579.3053588867188 MULTI HCD FTMS 0 0 0 26984 15467.6767578125 0.3226136361136601 13 -0.1128387451171875 1 NaN NaN 2 SY 2 -1 10.969 0 0 0.31632 0 0 2476.1968018582534 738.39582886472 3214.5926307229734 0 0 0 0 0 0 0 0 0 SY 0.31632 - 10 + NaN NaN 109164.7 NaN 21744 5239 26984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26986 105.45 NaN 28795 35 0 6096.4 0.261 -1 MQIIGFFLGMA 11 21 622.3167465160366 NaN 0 622.3171997070312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _M(Oxidation (M))QIIGFFLGMA_ tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1 5.731851221503515 0.3258605322397891 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.1012531865668 849.4039825932657 1126.5052357798324 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 93752.7 NaN 21745 5239 26984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26987 105.46 NaN 38380 35 0 4232.5 0.261 + 4046 ESERNITIMA 10 33 582.2905978331229 NaN 0 582.2903442382812 PEAK HCD FTMS 0 0 0 26984 12726.509765625 0.5832478806603295 9 -0.08187103271484375 3 Unmodified _ESERNITIMA_ ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant 3.2813086475875832 0.33737594360511275 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90657.1 NaN 21746 5239 26984 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26990 105.47 NaN 111280 35 0 27975 0.327 -1 AGWNAYIDNL 10 51 589.7773647742324 1177.5401766152647 2 589.273193359375 MULTI HCD FTMS 0 0 0 26989 16465.912109375 0.14494196370792434 26 -0.21593475341796875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))AGWNAYIDNL_ CON__P02584;ENSG00000108518|ENST00000225655|PFN1;PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant 15.738622578938676 0.3638982514236938 2 NAY{I|L} 4 -1 27.251 0 0 2.3142 0 0 356.1460858943647 357.14035974674067 713.2864456411054 0 0 0 0 0 1.2302046884880937 0 0 0 NAY{I|L} 2.3142 + + 58 + NaN NaN 118433.9 NaN 21747 5241 26989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26991 105.47 NaN 74165 35 0 6696.4 0.261 -1 LTLAWCPCL 9 29 567.2775331147722 NaN 0 567.2767333984375 PEAK HCD FTMS 0 0 0 26989 14211.9833984375 0.42895870686131327 20 -0.16945648193359375 2 2 Carbamidomethyl (C) _LTLAWC(Carbamidomethyl (C))PC(Carbamidomethyl (C))L_ ENST00000403534.7_1_19:45250964-45261799:+|nuORF 2.302733041254933 0.2840881193086663 2 S 1 -1 5.4846 0 0 0.48427 0 0 205.09596249910493 837.3892984090212 1042.485260908126 0 0 0 0 0 0 0 0 0 S 0.48427 - 2 + NaN NaN 111820.8 NaN 21748 5241 26989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26992 105.48 NaN 37214 35 0 4285.3 0.261 -1 0 23 573.4397015664556 NaN 0 573.8001098632812 PEAK HCD FTMS 0 0 0 26989 4738.2216796875 0.26392703120024447 -3 0.02907562255859375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103372.1 NaN 21749 5241 26989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26994 105.48 NaN 153570 35 0 54062 0.327 + -1 VAAAGCTC 8 37 405.16751250036685 808.3204720675337 2 405.16778564453125 MULTI HCD FTMS 0 0 0 26993 68956.546875 0.029164402622136282 -28 0.2642669677734375 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 13.979 0 0 1.7294 0 0 155.09465883224647 537.1184786432249 692.2131374754713 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 5 + NaN NaN 115631.7 NaN 21750 5242 26993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26995 105.49 NaN 65775 35 0 8893.7 0.261 -1 0 38 552.2934264896627 551.2861500230626 1 552.2932739257812 MULTI HCD FTMS 0 0 0 26993 29104.0625 0.2459447848900807 -28 0.2642669677734375 2 NaN NaN 2 W 1 -1 14.604 0 0 2.6491 0 0 347.19186398966264 0 347.19186398966264 0 14.604093769761874 0 0 0 0 0 0 0 W 2.6491 - 4 + NaN NaN 103474.5 NaN 21751 5242 26993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26997 105.49 NaN 103010 35 0 11429 0.326 + 21273 PRPGRPRRPRR 11 53 467.62371447635707 1399.8493140292712 3 467.9579772949219 MULTI HCD FTMS 0 0 0 26996 25084.826171875 0.19877212381916173 30 -0.2603607177734375 1 Unmodified _PRPGRPRRPRR_ ENST00000296350.9_1_3:196729451-196730141:-|nuORF 1.3296431237094175 0.4130893034510334 2 A 1 11 4.6041 0 0 0.3289 0 0 1073.6557848318087 252.13450037174064 1325.7902852035493 0 0 0 0 0 0 0 0 0 A 0.3289 - 5 + NaN NaN 101674.1 NaN 21752 5243 26996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 26998 105.5 NaN 72873 35 0 7723.1 0.261 + 22550 QSFDVFIDIL 10 38 598.8137828034481 1195.6130126736962 2 598.8153076171875 MULTI HCD FTMS 0 0 0 26996 83561.3359375 0.24973967964882787 -11 0.10247039794921875 2 Unmodified _QSFDVFIDIL_ REV__ENSG00000156502|ENST00000359655|SUPV3L1 9.5439744041441 0.42184090036563754 2 {I|L}D{I|L}{I|L} 4 -1 39.993 0 0 3.345 0 0 723.3227406232437 0 723.3227406232437 0 34.508272069161734 0 0 0 0.805462187404089 0 0 0 {I|L}D{I|L}{I|L} 3.345 + + 24 NaN NaN 102545.3 NaN 21753 5243 26996 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27000 105.5 NaN 85899 35 0 10336 0.327 + 10662 IPVEVLVDLF 10 38 572.3366697856551 1142.65878663811 2 572.336669921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _IPVEVLVDLF_ ENSG00000185686|ENST00000405655|PRAME 12.240655878213236 0.39661705172222156 2 {I|L}VD{I|L}{M(Oxidation (M))|F} 5 5 36.938 0 0 3.2327 0 0 537.3143177716812 0 537.3143177716812 0 36.938200260161125 0 0 0 0.3494850021680094 0 0 0 + {I|L}VD{I|L}{M(Oxidation (M))|F} 3.2327 + + 10 NaN NaN 94616.5 NaN 21754 5244 26999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27001 105.51 NaN 46008 35 0 8380.1 0.261 + 34721 YPVFLFYF 8 28 548.2789306640625 NaN 0 548.2789306640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YPVFLFYF_ ENSG00000181704|ENST00000462683|YIPF6;nc|ENSG00000181704|Q96EC8-2|YIPF6 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85554.9 NaN 21755 5244 26999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27003 105.51 NaN 56754 35 0 7100 0.411 -1 ASCRDYLLPDV 11 47 436.87988843290793 1307.6178358989239 3 436.87945556640625 MULTI HCD FTMS 0 0 0 27002 13479.0576171875 0.4968269075989503 -25 0.234527587890625 1 Carbamidomethyl (C) _ASC(Carbamidomethyl (C))RDYLLPDV_ ENSG00000228594|ENST00000422725|FNDC10 0.4545168274142398 0.41692731010159206 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 114099.5 NaN 21756 5245 27002 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27008 105.54 NaN 87243 35 0 10697 0.411 + 13855 KYPSPFFVF 9 41 566.29768411752 NaN 0 566.2978515625 PEAK HCD FTMS 0 0 0 27007 13195.6630859375 0.4939749236154172 6 -0.0498046875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.1998403495282098 2 V 1 8 12.985 0 0 1.1485 0 0 165.08097696128772 863.408702984721 1028.4896799460087 0 0 0 0 0 0.75 0 0 0 + V 1.1485 + + 8 + NaN NaN 114269.7 NaN 21757 5249 27007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27010 105.55 NaN 43855 35 0 3837.2 0.327 -1 0 38 530.6533736097435 1588.9382914294306 3 530.9879760742188 MULTI HCD FTMS 0 0 0 27009 9192.5390625 0.16403389736939616 -22 0.18573760986328125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116953.6 NaN 21758 5250 27009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27011 105.55 NaN 48294 35 0 6756.9 0.261 + 19356 NPDINHLLEI 10 31 589.3138126720451 NaN 0 589.3115844726562 PEAK HCD FTMS 0 0 0 27009 5786.55078125 0.15547423958253526 -1 0.0072479248046875 2 Unmodified _NPDINHLLEI_ REV__ENSG00000113273|ENST00000264914|ARSB;REV__nc|ENSG00000113273|P15848-2|ARSB 2.498486711656943 0.3380459306859131 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100733.1 NaN 21759 5250 27009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27013 105.56 NaN 283280 35 0 29467 0.412 + 4865 FADYNLLDLL 10 59 598.8137828034481 1195.6130126736962 2 598.813720703125 MULTI HCD FTMS 0 0 0 27012 199591.03125 0.5965175119080975 -3 0.0233612060546875 1 Unmodified _FADYNLLDLL_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF 65.47368725323818 0.022948616544343086 2 N{I|L}{I|L}D{I|L}{I|L} 6 4 71.107 0 0 5.9473 0 0 496.19444472480626 0 496.19444472480626 0 35.789719040763046 0 0 0 1.8494850021680094 0 0.3494850021680094 1.274227503252014 + N{I|L}{I|L}D{I|L}{I|L} 5.9473 + + 120 NaN NaN 182737.8 NaN 21760 5251 27012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27015 105.56 NaN 95312 35 0 15009 0.327 + 29977 VFIIVPAIF 9 32 509.82036822380763 1017.6261835144153 2 509.82049560546875 MULTI HCD FTMS 0 0 0 27014 57659.33984375 0.2572577838617804 -18 0.153411865234375 1 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 28.173230860318316 0.11963627304438548 2 V[PA]{I|L}{M(Oxidation (M))|F} 5 4 31.51 0 0 3.0964 0 0 472.305029805234 0 472.305029805234 0 30.541134294324124 0 0 0 1.3807196863200843 0 0 0 + V[PA]{I|L}{M(Oxidation (M))|F} 3.0964 + + 15 + NaN NaN 111408.2 NaN 21761 5252 27014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27016 105.57 NaN 58766 35 0 12941 0.261 + 35880 YYRRLFPY 8 29 589.3138126720451 NaN 0 589.31494140625 PEAK HCD FTMS 0 0 0 27014 12970.494140625 0.34849391109772365 1 -0.0093536376953125 2 Unmodified _YYRRLFPY_ ENSG00000198056|ENST00000338193|PRIM1;ENST00000546761.5_1_12:57139854-57146049:-|nuORF;ENST00000548173.5_1_12:57140708-57146082:-|nuORF 5.760428011301431 0.38822285293237185 2 {I|L} 1 7 6.9897 0 0 0.59405 0 0 550.2983273931151 510.2206514947875 1060.5189788879024 0 0 0 0 0 0 0 0 0 + {I|L} 0.59405 + + 5 + NaN NaN 99792.6 NaN 21762 5252 27014 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27019 105.58 NaN 64470 35 0 17206 0.327 + 32426 WARGCLCP 8 29 453.20952925952537 NaN 0 453.2094421386719 PEAK HCD FTMS 0 0 0 27018 33070.8046875 0.619404363699523 -40 0.36107635498046875 1 Unmodified _WARGCLCP_ ENST00000493076.5_1_22:35819109-35819445:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114765.8 NaN 21763 5254 27018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27020 105.58 NaN 113370 35 0 11940 0.261 + 22909 QYQFIDYR 8 29 566.775424453065 1131.53629597293 2 567.2774047851562 MULTI HCD FTMS 0 0 0 27018 20609.310546875 0.6478098286662884 -1 0.00701141357421875 2 Unmodified _QYQFIDYR_ REV__ENSG00000113262|ENST00000517717|GRM6;REV__ENSG00000179603|ENST00000339582|GRM8;REV__ENSG00000196277|ENST00000357716|GRM7;REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF;REV__nc|ENSG00000179603|O00222-2|GRM8;REV__nc|ENSG00000196277|Q14831-2|GRM7;REV__nc|ENSG00000196277|Q14831-3|GRM7;REV__nc|ENSG00000196277|Q14831-4|GRM7;REV__nc|ENSG00000196277|Q14831-5|GRM7 3.944395688203298 0.5361403129012058 2 SW 2 -1 24.776 0 0 2.1896 0 0 840.4120719094918 0 840.4120719094918 0 21.677353201839438 0 0 0 0.3807196863200844 0 0 0 SW 2.1896 - 5 NaN NaN 104289 NaN 21764 5254 27018 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27022 105.59 NaN 33100 35 0 4618.6 0.327 + 6162 FPEIFYTFL 9 30 588.8027954101562 NaN 0 588.8027954101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FPEIFYTFL_ ENSG00000196455|ENST00000356763|PIK3R4 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97806.9 NaN 21765 5255 27021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27023 105.59 NaN 127250 35 0 17327 0.261 + 424 AKWLIYMYA 9 32 579.8066840386177 NaN 0 579.8070678710938 PEAK HCD FTMS 0 0 0 27021 4840.1005859375 0.1948613970490523 -5 0.0425567626953125 2 Unmodified _AKWLIYMYA_ REV__ENSG00000118432|ENST00000369501|CNR1;REV__nc|ENSG00000118432|P21554-2|CNR1;REV__nc|ENSG00000118432|P21554-3|CNR1 8.593279151180031 0.2536050107310812 2 S 1 -1 11.237 0 0 0.97073 0 0 165.0806399504791 902.4627169244749 1067.543356874954 0 0 0 0 0 0.4247425010840047 0 0 0 S 0.97073 - 6 + NaN NaN 128573.6 NaN 21766 5255 27021 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27026 105.6 NaN 671000 35 0 330280 0.411 + 8239 GSSGAGSTEG 10 56 405.16751250036685 808.3204720675337 2 405.1678161621094 MULTI HCD FTMS 0 0 0 27025 887433.875 0.37533026237434486 -13 0.10332489013671875 1 Unmodified _GSSGAGSTEG_ REV__ENSG00000128908|ENST00000648947|INO80;REV__INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant 1.4819007175156935 0.4674597685733628 2 {I|L} 1 -1 14.732 0 0 1.8225 0 0 540.1423439209774 152.07160364322502 692.2139475642024 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.8225 - 9 + NaN NaN 293679.6 NaN 21767 5257 27025 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27029 105.62 NaN 110200 35 0 17001 0.327 + 10663 IPVEVLVDLF 10 35 572.3366697856551 1142.65878663811 2 572.3367309570312 MULTI HCD FTMS 0 0 0 27028 62553.9375 0.41903043766414444 5 -0.04433441162109375 1 Unmodified _IPVEVLVDLF_ ENSG00000185686|ENST00000405655|PRAME 17.11289562659939 0.35104376501799556 2 {I|L}VD{I|L}{M(Oxidation (M))|F} 5 5 43.315 0 0 3.7908 0 0 537.3148060529312 0 537.3148060529312 0 43.31546893236258 0 0 0 0.7742275032520141 0 0 0 + {I|L}VD{I|L}{M(Oxidation (M))|F} 3.7908 + + 19 NaN NaN 112921.7 NaN 21768 5259 27028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27030 105.62 NaN 66857 35 0 37977 0.261 -1 0 22 607.329858365451 606.3225818988509 1 607.3304443359375 MULTI HCD FTMS 0 0 0 27028 41854.77734375 0.8294450823970345 -11 0.08722686767578125 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94127.4 NaN 21769 5259 27028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27031 105.63 NaN 41308 35 0 6008.5 0.261 -1 LMLGWLVFP 9 29 546.30078125 NaN 0 546.30078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Oxidation (M) _LM(Oxidation (M))LGWLVFP_ ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF 2.302733041254933 0.2840881193086663 2 C 1 -1 2.2185 0 0 0.20342 0 0 460.48641337714986 524.0808809869749 984.5672943641248 0 0 0 0 0 0 0 0 0 C 0.20342 - 1 + NaN NaN 106255.1 NaN 21770 5259 27028 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27033 105.63 NaN 19880 35 0 2096.2 0.411 -1 0 25 642.5943128307913 NaN 0 642.7122192382812 PEAK HCD FTMS 0 0 0 27032 4879.626953125 0.9386769652900498 -1 0.01253509521484375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100322.9 NaN 21771 5260 27032 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27035 105.64 NaN 86904 35 0 11199 0.327 + 766 ASILDEYENSL 11 36 648.3037552347073 1294.5929575362145 2 648.3040161132812 MULTI HCD FTMS 0 0 0 27034 34611.2421875 0.6068095701444978 -9 0.07651519775390625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ASILDEYENSL_ ENSG00000104142|ENST00000220509|VPS18 42.835182525472874 0.11869059338859039 2 {I|L}DEY 4 7 46.983 0 0 3.6291 0 0 313.16389367078324 458.1888826959594 771.3527763667427 0 0 0 0 0 1.805462187404089 0 0.8494850021680094 0 + {I|L}DEY 3.6291 + + 32 + NaN NaN 115769.3 NaN 21772 5261 27034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27036 105.64 NaN 63923 35 0 16048 0.264 + -1 RMLALPLI 8 24 471.7955302852315 NaN 0 471.7950744628906 PEAK HCD FTMS 0 0 0 27034 18323.345703125 0.5460437761488681 -9 0.07651519775390625 2 Oxidation (M) _RM(Oxidation (M))LALPLI_ REV__ENSG00000188338|ENST00000614032|SLC38A3 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94795.1 NaN 21773 5261 27034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27038 105.65 NaN 142450 35 0 23870 0.411 + 17534 LYVDSLFFL 9 50 558.80239729164 1115.5902416500799 2 558.8025512695312 MULTI HCD FTMS 0 0 0 27037 41669.65234375 0.020021167188651167 -24 0.20801544189453125 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.00464763827098139 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 77.858 0 0 6.9791 6.9791 95.408 0 0 0 4.232712163289278 66.88933438737884 4.232712163289278 77.8584345174594 0 2.3494850021680094 0 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 6.9791 + + 215 NaN NaN 155147 NaN 21774 5262 27037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27041 105.66 NaN 94562 35 0 4329.9 0.411 -1 0 66 530.6533736097435 1588.9382914294306 3 530.6534423828125 MULTI HCD FTMS 0 0 0 27040 54550.67578125 0.8368005646032857 -4 0.03179931640625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 122683.4 NaN 21775 5264 27040 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27043 105.67 NaN 110270 35 0 11941 0.411 -1 0 51 566.2973257094471 565.2900492428471 1 566.2979125976562 MULTI HCD FTMS 0 0 0 27042 26693.15625 0.6366211375290993 1 -0.0075225830078125 1 NaN NaN 2 {[CT]|[{M(Oxidation (M))|F}G]}PV{M(Oxidation (M))|F} 5 -1 {[CT]|[{M(Oxidation (M))|F}G]}P + + 19.464 7.4473 2.473 3.4432 3.4432 60.42 0 0 0 0 -1.5051499783199063 -1.5051499783199063 0 0 0 0 0 0 {[CT]|[{M(Oxidation (M))|F}G]}PV{M(Oxidation (M))|F} 3.4432 - 21 + NaN NaN 124161.6 NaN 21776 5265 27042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27045 105.68 NaN 298000 35 0 27623 0.411 + 4866 FADYNLLDLL 10 65 598.8138139261389 NaN 0 598.8145141601562 PEAK HCD FTMS 0 0 0 27044 53082.92578125 0.230029372304111 -1 0.0075225830078125 1 Unmodified _FADYNLLDLL_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF 84.5221896805406 0.0062089889042501074 2 {I|L}D{I|L}{I|L}NY 6 7 59.174 0 0 4.9493 0 0 131.09724682200005 330.1084383600219 461.20568518202197 0 0 0 0 0 2.305462187404089 0 0.3807196863200844 1.2302046884880937 {I|L}D{I|L}{I|L}NY 4.9493 - 104 + NaN NaN 205782.7 NaN 21777 5266 27044 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27047 105.69 NaN 207780 35 0 44596 0.327 + 29978 VFIIVPAIF 9 34 509.82036822380763 1017.6261835144153 2 509.82037353515625 MULTI HCD FTMS 0 0 0 27046 98302.765625 0.4385959274022581 -3 0.02239990234375 1 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 45.7499826716795 0.03894913563566938 2 V[PA]{I|L}{M(Oxidation (M))|F} 5 4 39.961 0 0 3.9269 0 0 472.3047764062739 0 472.3047764062739 0 37.48651242028323 0 0 0 1.9247425010840047 0 0 0 + V[PA]{I|L}{M(Oxidation (M))|F} 3.9269 + + 21 + NaN NaN 118937.8 NaN 21778 5267 27046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27048 105.69 NaN 144370 35 0 23345 0.261 + -1 GGIIACYFLI 10 35 563.8004790740215 NaN 0 563.8001098632812 PEAK HCD FTMS 0 0 0 27046 65159.98046875 0.8114488981855329 -3 0.02239990234375 2 Carbamidomethyl (C) _GGIIAC(Carbamidomethyl (C))YFLI_ REV__ENSG00000164038|ENST00000394785|SLC9B2;REV__nc|ENSG00000164038|Q86UD5-2|SLC9B2;REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant 12.531546534597751 0.32945902202414107 2 {I|L}{M(Oxidation (M))|F} 2 -1 20.969 0 0 1.8629 0 0 131.0963822165832 731.3144625299436 862.4108447465269 0 0 0 0 0 1 0 0 0 {I|L}{M(Oxidation (M))|F} 1.8629 - 4 + NaN NaN 104569 NaN 21779 5267 27046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27049 105.69 NaN 27475 35 0 6543.3 0.261 + 30748 VPLFRLRHFP 10 19 641.383167211417 NaN 0 641.7138061523438 PEAK HCD FTMS 0 0 0 27046 4494.39453125 0.1917129370512267 -3 0.02239990234375 3 Unmodified _VPLFRLRHFP_ ENSG00000171094|ENST00000389048|ALK 0.4007161486938917 0.3398413315442166 2 C(Carbamidomethyl (C)) 1 10 5.4846 0 0 0.42823 0 0 853.4440249972496 264.24994836978755 1117.6939733670372 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.42823 - 3 + NaN NaN 84171.6 NaN 21780 5267 27046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27050 105.7 NaN 39858 35 0 6399.1 0.262 + 30313 VKSSKSTKTK 10 30 547.332635718683 NaN 0 547.3324584960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VKSSKSTKTK_ REV__ENSG00000146776|ENST00000419735|ATXN7L1;REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF;REV__nc|ENSG00000146776|Q9ULK2-3|ATXN7L1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110696.4 NaN 21781 5267 27046 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27052 105.7 NaN 100890 35 0 17883 0.327 -1 LCILLVLL 8 32 499.8195212271087 997.6244895210174 2 499.8197021484375 MULTI HCD FTMS 0 0 0 27051 85712.03125 0.8960661474760186 -18 0.15618133544921875 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 11.114462752807354 0.5120171699125776 2 V{I|L}{I|L} 3 -1 31.198 0 0 3.1272 0 0 654.3763905255875 0 654.3763905255875 0 31.197887582883936 0 0 0 0.5 0 0 0 V{I|L}{I|L} 3.1272 + + 4 NaN NaN 112817.6 NaN 21782 5268 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27053 105.71 NaN 132720 35 0 9739.3 0.261 + 20469 PAWELPFSW 9 39 566.775424453065 1131.53629597293 2 566.7755126953125 MULTI HCD FTMS 0 0 0 27051 12447.1162109375 0.463161401948906 23 -0.219024658203125 2 Unmodified _PAWELPFSW_ REV__nc|ENSG00000169905|Q9H496|TOR1AIP2 7.289230182591677 0.29575926068275815 2 SW 2 -1 25.573 0 0 2.26 0 0 840.4131927915818 0 840.4131927915818 0 10.969100130080562 0 0 0 0.7614393726401688 0 0 0 SW 2.26 + + 15 NaN NaN 114668.1 NaN 21783 5268 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27054 105.71 NaN 31992 35 0 5380 0.261 + 5337 FFRLLLIAP 9 29 545.3454820372419 NaN 0 545.752197265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FFRLLLIAP_ REV__ENSG00000132196|ENST00000254521|HSD17B7;REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF;REV__nc|ENSG00000132196|P56937-2|HSD17B7 0 0.29524684227089293 2 G 1 -1 2.4743 0 0 0.22727 0 0 524.1592735453838 504.4591463678344 1028.6184199132183 0 0 0 0 0 0 0 0 0 G 0.22727 - 1 + NaN NaN 91288.6 NaN 21784 5268 27051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27056 105.72 NaN 59806 35 0 10835 0.411 + 19357 NPDLAKYPLF 10 48 589.3150447370801 NaN 0 589.3134155273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NPDLAKYPLF_ ENSG00000162971|ENST00000354611|TYW5;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;nc|ENSG00000162971|A2RUC4-2|TYW5 8.155526934196011 0.33320428830121973 2 {I|L} 1 9 13.539 0 0 1.1507 0 0 326.11933400365393 734.3890474908811 1060.5083814945351 0 0 0 0 0 0.805462187404089 0 0 0 + {I|L} 1.1507 + + 29 + NaN NaN 105879.6 NaN 21785 5269 27055 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27058 105.72 NaN 1454300 35 0 738160 0.327 -1 MCSGQAGV 8 41 405.16751250036685 808.3204720675337 2 405.16790771484375 MULTI HCD FTMS 0 0 0 27057 2364408 1 0 0 1 Carbamidomethyl (C) _MC(Carbamidomethyl (C))SGQAGV_ ENST00000401738.3_1_2:42530513-42531625:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}K 2 -1 18.315 0 0 2.2659 0 0 155.09469330483176 409.0116060846313 564.1062993894631 0 0 0 0 0 0.9247425010840047 0 0 0.5 {I|L}K 2.2659 - 11 + NaN NaN 320430.2 NaN 21786 5270 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27059 105.73 NaN 23015 35 0 4503.4 0.261 + 22021 QFVEFRLKTL 10 18 640.8694458007812 NaN 0 640.8694458007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QFVEFRLKTL_ REV__ENSG00000138622|ENST00000261917|HCN4;REV__ENSG00000143630|ENST00000368358|HCN3;REV__ENST00000496230.5_1_1:155254296-155257077:+|nuORF 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107288.7 NaN 21787 5270 27057 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27061 105.73 NaN 134040 35 0 83089 0.411 + 21520 PYISPLAYT 9 52 512.7728801171522 NaN 0 512.7733154296875 PEAK HCD FTMS 0 0 0 27060 8167.705078125 0.38542630474748646 1 -0.007598876953125 1 Unmodified _PYISPLAYT_ REV__ENSG00000011405|ENST00000691414|PIK3C2A;REV__nc|ENSG00000011405|O00443-2|PIK3C2A 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 130949.9 NaN 21788 5271 27060 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27063 105.74 NaN 66768 35 0 15056 0.327 + 18951 NAHDSSFK 8 35 453.20952925952537 NaN 0 453.2093200683594 PEAK HCD FTMS 0 0 0 27062 42028.3125 0.7871752867043752 -22 0.19387054443359375 1 Unmodified _NAHDSSFK_ ENST00000382361.7_1_7:5646078-5646261:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115099 NaN 21789 5272 27062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27064 105.74 NaN 100700 35 0 12369 0.261 + 32677 WPEKGQELSS 10 36 580.7848269432232 NaN 0 580.7854614257812 PEAK HCD FTMS 0 0 0 27062 24028.966796875 0.28587883236957795 -14 0.127593994140625 2 Unmodified _WPEKGQELSS_ REV__ENSG00000181007|ENST00000392161|ZFP82;REV__ENSG00000196867|ENST00000301318|ZFP28;REV__ENSG00000197808|ENST00000588268|ZNF461;REV__nc|ENSG00000196867|Q8NHY6-2|ZFP28 2.9952420565917617 0.3376207769591857 2 P 1 -1 1.9897 0 0 0.17159 0 0 541.2572016385963 518.2214449518186 1059.4786465904149 0 0 0 0 0 0 0 0 0 P 0.17159 + + 1 + NaN NaN 106822.7 NaN 21790 5272 27062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27065 105.75 NaN 17351 35 0 4594.1 0.261 + 12519 KRRWMVRKM 9 13 645.8719482421875 NaN 0 645.8719482421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _KRRWMVRKM_ ENSG00000225921|ENST00000451315|NOL7 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103408.5 NaN 21791 5272 27062 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27069 105.77 NaN 79294 35 0 25758 0.327 + 16880 LYFDVEPFVF 10 30 638.3185308893308 1274.6225088454614 2 638.319091796875 MULTI HCD FTMS 0 0 0 27068 14706.9580078125 0.2532416607408496 -4 0.0341796875 1 Unmodified _LYFDVEPFVF_ ENSG00000103510|ENST00000219797|KAT8;ENST00000538768.2_1_16:31138259-31142577:+|nuORF;nc|ENSG00000103510|Q9H7Z6-2|KAT8 3.5964929083625545 0.45626689593999237 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109284.6 NaN 21792 5275 27068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27070 105.77 NaN 79332 35 0 18499 0.261 + 35649 YYIFIPSKF 9 31 589.3161010742188 NaN 0 589.3161010742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 6.723162845929126 0.26266733336404485 2 D 1 9 6.9897 0 0 0.59405 0 0 407.7736051740249 650.7965181940061 1058.570123368031 0 0 0 0 0 0 0 0 0 D 0.59405 - 4 + NaN NaN 100102.8 NaN 21793 5275 27068 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27072 105.78 NaN 704770 35 0 98243 0.327 + 17535 LYVDSLFFL 9 43 558.80239729164 1115.5902416500799 2 558.8026123046875 MULTI HCD FTMS 0 0 0 27071 517198.875 0.24850039690120965 -10 0.09716796875 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 109.62928328672726 0.0030029239606406397 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 91.621 0 0 8.2128 8.2128 97.636 0 0 0 14.365677915492512 80.6522093331786 14.365677915492512 91.62130946325917 0 2.4247425010840047 1.3010299956639813 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.2128 + + 198 NaN NaN 199731.7 NaN 21794 5276 27071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27073 105.78 NaN 97288 35 0 6320 0.261 + 20470 PAWELPFSW 9 45 566.775424453065 1131.53629597293 2 567.2780151367188 MULTI HCD FTMS 0 0 0 27071 11165.892578125 0.35097607663727204 21 -0.1971282958984375 2 Unmodified _PAWELPFSW_ REV__nc|ENSG00000169905|Q9H496|TOR1AIP2 7.289230182591677 0.29575926068275815 2 SW 2 -1 29.024 0 0 2.565 0 0 840.411028008369 0 840.411028008369 0 8.05462187404089 0 0 0 0.805462187404089 0 0 0 SW 2.565 + + 11 NaN NaN 105912.1 NaN 21795 5276 27071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27074 105.78 NaN 45286 35 0 5236.6 0.261 + 20732 PFYYIYTPI 9 26 588.8028564453125 NaN 0 588.8028564453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _PFYYIYTPI_ REV__ENSG00000131778|ENST00000369258|CHD1L;REV__nc|ENSG00000131778|Q86WJ1-2|CHD1L;REV__nc|ENSG00000131778|Q86WJ1-3|CHD1L;REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L;REV__nc|ENSG00000131778|Q86WJ1-5|CHD1L 2.0597508629832335 0.2852655770354268 2 C(Carbamidomethyl (C)) 1 -1 2.7642 0 0 0.23513 0 0 446.50245419746244 566.0317476861936 1012.5342018836561 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.23513 - 1 + NaN NaN 90503.3 NaN 21796 5276 27071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27076 105.79 NaN 754680 35 0 228030 0.327 -1 SAWMFEVFH 9 58 585.2580597770896 1168.501566620979 2 585.2583618164062 MULTI HCD FTMS 0 0 0 27075 191717.515625 0.38144121418338756 -9 0.08617401123046875 1 Oxidation (M) _SAWM(Oxidation (M))FEVFH_ ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4 4.3292370932331545 0.3181982124262546 2 SA 2 -1 14.949 0 0 1.2793 0 0 0 1007.3962854013378 1007.3962854013378 6.096981436199016 0 0 0 0 0 0 0 0 SA 1.2793 + + 12 + NaN NaN 204672.2 NaN 21797 5277 27075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27077 105.79 NaN 38095 35 0 4306.6 0.261 -1 ASILDEYENSL 11 28 648.3037552347073 1294.5929575362145 2 648.3045043945312 MULTI HCD FTMS 0 0 0 27075 27031 0.4739116094625409 7 -0.0699310302734375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ASILDEYENSL_ ENSG00000104142|ENST00000220509|VPS18 15.738622578938676 0.31995127722034494 2 {I|L}Y 2 -1 20.969 0 0 1.6197 0 0 313.1627340028145 702.2616060846311 1015.4243400874457 0 0 0 0 0 1 0 0 0 {I|L}Y 1.6197 - 4 + NaN NaN 98419.1 NaN 21798 5277 27075 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27079 105.8 NaN 217650 35 0 59996 0.327 + 4867 FADYNLLDLL 10 47 598.8138139261389 NaN 0 598.8134765625 PEAK HCD FTMS 0 0 0 27078 37641.69921875 0.1631164129767625 11 -0.1043853759765625 1 Unmodified _FADYNLLDLL_ ENSG00000084207|ENST00000398606|GSTP1;ENST00000494593.1_1_11:67353853-67354045:+|nuORF;ENST00000498765.5_1_11:67352240-67354045:+|nuORF 21.590151480376914 0.2677540384105019 2 {I|L}D{I|L}{I|L} 4 6 33.047 0 0 2.7641 0 0 131.09837529767725 607.2139986627561 738.3123739604334 0 0 0 0 0 1.3494850021680094 0 0 0 + {I|L}D{I|L}{I|L} 2.7641 + + 26 + NaN NaN 121907.4 NaN 21799 5278 27078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27080 105.8 NaN 135290 35 0 16153 0.261 + 16766 LYDLDKHQE 9 49 580.7848269432232 NaN 0 580.784912109375 PEAK HCD FTMS 0 0 0 27078 29467.314453125 0.3505802609050226 -8 0.0751800537109375 2 Unmodified _LYDLDKHQE_ tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1 7.910154910731844 0.25691533546754686 2 {M(Oxidation (M))|F} 1 9 6.9897 0 0 0.60279 0 0 151.10185903175062 858.3641451471311 1009.4660041788818 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.60279 - 4 + NaN NaN 114012.7 NaN 21800 5278 27078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27081 105.81 NaN 79914 35 0 6812.9 0.261 + 33097 YDSIIVFYN 9 42 567.2779063669996 NaN 0 567.2781982421875 PEAK HCD FTMS 0 0 0 27078 11937.58203125 0.3599486605549626 -16 0.148956298828125 3 Unmodified _YDSIIVFYN_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 3.944395688203298 0.27613285122220627 2 {M(Oxidation (M))|F} 1 8 5.4846 0 0 0.48427 0 0 295.11829945099277 687.3305147760374 982.4488142270302 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.48427 + + 5 + NaN NaN 106324.6 NaN 21801 5278 27078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27082 105.81 NaN 20808 35 0 4240.8 0.261 + 20729 PFYDMIHQAQ 10 16 625.28662109375 NaN 0 625.28662109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _PFYDMIHQAQ_ CON__P17697 1.4819007175156935 0.33891598740166873 2 {I|L} 1 9 11.99 0 0 0.96105 0 0 652.2535597638688 479.1976896454687 1131.4512494093374 0 0 0 0 0 0.5 0 0 0 + {I|L} 0.96105 + + 1 + NaN NaN 94888.8 NaN 21802 5278 27078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27084 105.81 NaN 128250 35 0 24594 0.327 + 29979 VFIIVPAIF 9 36 509.82036822380763 1017.6261835144153 2 509.8205871582031 MULTI HCD FTMS 0 0 0 27083 20728.5234375 0.09248413208872784 9 -0.0786895751953125 1 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 36.466142684027034 0.08156716203802528 2 V[PA]{I|L}{M(Oxidation (M))|F} 5 4 38.328 0 0 3.7664 0 0 472.3026295392594 0 472.3026295392594 0 38.32773124424534 0 0 0 1.8494850021680094 0 0 0 + V[PA]{I|L}{M(Oxidation (M))|F} 3.7664 + + 15 NaN NaN 108475.6 NaN 21803 5279 27083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27085 105.82 NaN 111000 35 0 10875 0.261 + 13841 KYPSPFFVF 9 51 566.2970547623468 1130.5795565914934 2 566.2958374023438 MULTI HCD FTMS 0 0 0 27083 22845.603515625 0.5007503367889267 -15 0.1504058837890625 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 13.042465956692817 0.2476723265019929 2 V{M(Oxidation (M))|F} 2 7 22.831 0 0 2.0194 0 0 866.4301014630875 0 866.4301014630875 0 7.210769139662002 0 0 0 0.4247425010840047 0 0 0 + V{M(Oxidation (M))|F} 2.0194 + + 33 NaN NaN 116622.2 NaN 21804 5279 27083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27087 105.82 NaN 59542 35 0 5020 0.411 -1 0 58 530.6533736097435 1588.9382914294306 3 530.6533813476562 MULTI HCD FTMS 0 0 0 27086 41646.18359375 0.6388472634980716 12 -0.105133056640625 1 NaN NaN 2 {I|L} 1 -1 6.9897 0 0 0.4399 0 0 661.4143248675136 811.4151095025999 1472.8294343701136 0 0 0 0 0 0 0 0 0 {I|L} 0.4399 - 6 + NaN NaN 109293.2 NaN 21805 5280 27086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27090 105.84 NaN 122880 35 0 27399 0.327 + 17075 LYLAFPLAF 9 27 527.8022547764584 1053.5899566197168 2 527.80224609375 MULTI HCD FTMS 0 0 0 27089 29195.72265625 0.1088721706597555 -14 0.13600921630859375 1 Unmodified _LYLAFPLAF_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 20.871210003555333 0.18003371494288972 2 {M(Oxidation (M))|F} 1 8 20.485 0 0 1.9443 0 0 888.511585503309 0 888.511585503309 0 5.752574989159953 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.9443 + + 3 + NaN NaN 117190.9 NaN 21806 5282 27089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27091 105.84 NaN 67626 35 0 9068.3 0.261 -1 LCILLVLL 8 22 499.8195212271087 997.6244895210174 2 499.81982421875 MULTI HCD FTMS 0 0 0 27089 32163.888671875 0.3362535152852837 -4 0.04018402099609375 2 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}{I|L} 2 -1 25.969 0 0 2.6031 0 0 753.4431776159171 0 753.4431776159171 0 25.969100130080562 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6031 + + 2 NaN NaN 111066.4 NaN 21807 5282 27089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27092 105.85 NaN 88451 35 0 17295 0.261 + -1 SYCCCCCD 8 32 564.1402620332291 NaN 0 563.80029296875 PEAK HCD FTMS 0 0 0 27089 10411.349609375 0.28855206446975784 22 -0.18500518798828125 3 4 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))CD_ REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF 0 0.38822285293237185 2 {I|L} 1 -1 5.4846 0 0 0.48697 0 0 652.271605077917 357.87812219791255 1010.1497272758295 0 0 0 0 0 0 0 0 0 {I|L} 0.48697 - 2 + NaN NaN 118839.9 NaN 21808 5282 27089 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27094 105.85 NaN 1227200 35 0 594470 0.411 + -1 VAAAGCTC 8 58 405.16751250036685 808.3204720675337 2 405.16790771484375 MULTI HCD FTMS 0 0 0 27093 1477015.25 0.6246871309858535 13 -0.11446380615234375 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L}K 2 -1 21.498 0 0 2.6596 0 0 155.0945004938282 409.01279627017817 564.1072967640064 0 0 0 0 0 0.9247425010840047 0 0 0.8807196863200843 {I|L}K 2.6596 - 18 + NaN NaN 455530.6 NaN 21809 5283 27093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27097 105.86 NaN 40324 35 0 5897.9 0.411 + 20399 NYVKANYLPY 10 38 622.8180267008719 NaN 0 622.8175659179688 PEAK HCD FTMS 0 0 0 27096 6182.86865234375 0.4870004400594223 1 -0.00719451904296875 1 Unmodified _NYVKANYLPY_ tr|U7T3N1|U7T3N1_FUSNUFlavodoxin-likefolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00360PE=4SV=1 6.2057823575117 0.3348729994311477 2 {I|L} 1 9 6.9897 0 0 0.56204 0 0 853.4321521792843 274.0832613580688 1127.5154135373532 0 0 0 0 0 0 0 0 0 + {I|L} 0.56204 + + 5 + NaN NaN 112885.7 NaN 21810 5285 27096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27099 105.87 NaN 44749 35 0 3965.6 0.411 + -1 KATTPMRG 8 43 439.23032612835385 NaN 0 439.23028564453125 PEAK HCD FTMS 0 0 0 27098 29295.767578125 0.4029864087427499 -180 1.6927871704101562 1 Oxidation (M) _KATTPM(Oxidation (M))RG_ REV__ENSG00000184108|ENST00000332517|TRIML1 2.302733041254933 0.38822285293237185 2 N 1 -1 4.6041 0 0 0.52531 0 0 540.3120183682328 219.0629824274047 759.3750007956374 0 0 0 0 0 0 0 0 0 N 0.52531 - 3 + NaN NaN 101746.5 NaN 21811 5286 27098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27101 105.88 NaN 53034 35 0 6596 0.327 + 12497 KRKLLLLLL 9 26 555.4108035162026 NaN 0 555.4107666015625 PEAK HCD FTMS 0 0 0 27100 18019.572265625 0.3043778782383047 6 -0.05811309814453125 1 Unmodified _KRKLLLLLL_ ENST00000433301.5_1_12:110943436-110952922:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100346 NaN 21812 5287 27100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27102 105.88 NaN 180630 35 0 35114 0.261 + -1 LYLAIPNIC 9 40 538.7932795455094 1075.5720061578188 2 538.7940063476562 MULTI HCD FTMS 0 0 0 27100 13211.61328125 0.3049007081502137 -3 0.0217437744140625 2 Carbamidomethyl (C) _LYLAIPNIC(Carbamidomethyl (C))_ REV__ENSG00000136160|ENST00000646607|EDNRB;REV__nc|ENSG00000136160|P24530-2|EDNRB;REV__nc|ENSG00000136160|P24530-3|EDNRB 16.942295170755138 0.21397866736869717 2 [Y{I|L}]{I|L}A{M(Oxidation (M))|F} 5 -1 46.224 0 0 4.2976 0 0 0 465.21100794010005 465.21100794010005 25.254537344402905 0 0 0 0 1.25 1.3010299956639813 0 0 [Y{I|L}]{I|L}A{M(Oxidation (M))|F} 4.2976 - 16 + NaN NaN 119986.2 NaN 21813 5287 27100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27103 105.89 NaN 20376 35 0 2678.5 0.261 + 2138 DFWCDVVIADL 11 17 648.3033653268238 NaN 0 647.8961181640625 PEAK HCD FTMS 0 0 0 27100 4641.1103515625 0.9303009841230163 -1 0.0075225830078125 3 Unmodified _DFWCDVVIADL_ ENSG00000198879|ENST00000397167|SFMBT2;SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant 1.3295316138638542 0.3383486451652214 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90871.7 NaN 21814 5287 27100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27105 105.89 NaN 129860 35 0 30033 0.327 -1 RCPLCQEQLVG 11 48 434.88222977264707 NaN 0 434.88226318359375 PEAK HCD FTMS 0 0 0 27104 64091.2890625 0.7311561855568114 -59 0.5254974365234375 1 Carbamidomethyl (C) _RCPLC(Carbamidomethyl (C))QEQLVG_ ENSG00000136367|ENST00000419474|ZFHX2 1.3296431237094175 0.3383483288439026 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 127826 NaN 21815 5288 27104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27106 105.9 NaN 41796 35 0 4914.2 0.261 -1 0 37 647.9778442382812 NaN 0 647.9778442382812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 S 1 -1 6.9897 0 0 0.54019 0 0 1002.665852830275 201.22486292056877 1203.8907157508438 0 0 0 0 0 0 0 0 0 S 0.54019 - 1 + NaN NaN 97472 NaN 21816 5288 27104 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27108 105.9 NaN 625080 35 0 92835 0.327 + 17536 LYVDSLFFL 9 41 558.80239729164 1115.5902416500799 2 558.8027954101562 MULTI HCD FTMS 0 0 0 27107 331210.625 0.15913795591762978 3 -0.0264129638671875 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 109.62928328672726 0.0030029239606406397 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 93.382 0 0 8.3707 8.3707 97.881 0 0 0 15.871280189675971 82.41312192373542 15.871280189675971 93.38222205381598 0 2.4247425010840047 1.3010299956639813 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.3707 + + 197 NaN NaN 190988.9 NaN 21817 5289 27107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27109 105.91 NaN 1004000 35 0 218510 0.261 -1 0 77 569.7937493903412 1137.5729458474823 2 569.7938842773438 MULTI HCD FTMS 0 0 0 27107 98260.8984375 0.14801533869487357 3 -0.0264129638671875 2 NaN NaN 2 {I|L}YVD{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 7 -1 75.098 0 0 6.6016 0 0 0 297.12226282291255 297.12226282291255 54.596463608100336 0 0 0 0 1.579689690656103 2 1.535666875892183 0 {I|L}YVD{[TV]|[{I|L}S]}{M(Oxidation (M))|F} 6.6016 - 260 + NaN NaN 241780.9 NaN 21818 5289 27107 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27111 105.91 NaN 716750 35 0 245190 0.327 -1 0 53 585.2580597770896 1168.501566620979 2 585.2581787109375 MULTI HCD FTMS 0 0 0 27110 221383.109375 0.440463886486343 4 -0.0338134765625 1 NaN NaN 2 [Y{I|L}]VE 4 -1 30.952 0 0 2.6488 0 0 0 661.2180637735759 661.2180637735759 16.00329725273209 0 0 0 0 0.5 1.3979400086720375 0 0 [Y{I|L}]VE 2.6488 - 21 NaN NaN 215295 NaN 21819 5290 27110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27112 105.92 NaN 42150 35 0 7656 0.261 + 11978 KFSTSFWY 8 27 533.2571265211599 NaN 0 533.25732421875 PEAK HCD FTMS 0 0 0 27110 12166.1083984375 1 0 0 2 Unmodified _KFSTSFWY_ REV__ENSG00000256797|ENST00000535540|KLRF2 0.7936320650641473 0.38822285293237185 2 Y 1 -1 2.4743 0 0 0.23243 0 0 500.6713442515009 397.7452791803344 898.4166234318353 0 0 0 0 0 0 0 0 0 Y 0.23243 + + 1 + NaN NaN 104614 NaN 21820 5290 27110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27114 105.92 NaN 106540 35 0 13833 0.411 + -1 YIVLCFMLS 9 58 581.2859319119203 1160.5573108906406 2 581.2853393554688 MULTI HCD FTMS 0 0 0 27113 33011.953125 0.927056903184617 4 -0.031402587890625 1 Carbamidomethyl (C),Oxidation (M) _YIVLC(Carbamidomethyl (C))FM(Oxidation (M))LS_ REV__ENST00000453348.1_1_7:1778478-1778763:-|nuORF 8.593279151180031 0.2858735984551981 2 [W{I|L}]PD 4 -1 14.693 0 0 1.266 0 0 0 646.2841890924436 646.2841890924436 11.197887582883936 0 0 0 0 0 0 0 0 [W{I|L}]PD 1.266 - 43 + NaN NaN 129102.2 NaN 21821 5291 27113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27116 105.93 NaN 99350 35 0 9505.8 0.327 -1 LAGNWEKSW 9 42 566.7749566767048 NaN 0 566.7744750976562 PEAK HCD FTMS 0 0 0 27115 5370.095703125 0.28605831805151216 -3 0.0264129638671875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LAGNWEKSW_ ENST00000443993.1_1_9:132342759-132345006:+|nuORF 8.745405648335112 0.25286782695573473 2 S 1 -1 13.979 0 0 1.2354 0 0 204.09100614260052 837.3900394072623 1041.4810455498628 0 0 0 0 0 0.8494850021680094 0 0 0 S 1.2354 + + 11 + NaN NaN 116903.6 NaN 21822 5292 27115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27117 105.93 NaN 23546 35 0 3391.5 0.261 -1 DYMNLLGMIF 10 23 624.7855997428646 1247.5566465525292 2 624.7857055664062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 5.731851221503515 0.44496410492002586 2 {I|L} 1 -1 16.237 0 0 1.3015 0 0 482.22505583162916 649.228858547763 1131.4539143793922 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.3015 + + 2 + NaN NaN 114005 NaN 21823 5292 27115 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27119 105.94 NaN 101590 35 0 7366 0.411 + 13842 KYPSPFFVF 9 54 566.2970547623468 1130.5795565914934 2 566.295654296875 MULTI HCD FTMS 0 0 0 27118 10986.0068359375 0.24080110728082263 -1 0.00933837890625 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.13340543277302316 2 [YK][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 36.985 0 0 3.2713 3.2713 80.654 0 0 0 0.796896906561031 9.316271552006661 0.796896906561031 0.796896906561031 0 1.6861818737241734 0 0 0 + + [YK][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK][PS][QA]YK{M(Oxidation (M))|F};[YQ][{I|L}A][QA]YK{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A][QA]YK{M(Oxidation (M))|F} 3.2713;3.2009;3.0904;1.7838;1.7133;1.6028 +;-;-;-;-;- + 70 NaN NaN 124456.1 NaN 21824 5293 27118 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27122 105.95 NaN 99613 35 0 15494 0.327 + 29980 VFIIVPAIF 9 31 509.82036822380763 1017.6261835144153 2 509.8209533691406 MULTI HCD FTMS 0 0 0 27121 32615.16015625 0.14551855510020037 24 -0.19988250732421875 1 Unmodified _VFIIVPAIF_ ENSG00000158669|ENST00000396987|GPAT4 20.871210003555333 0.18003371494288972 2 {M(Oxidation (M))|F} 1 8 19.604 0 0 1.9265 0 0 852.5473546343356 0 852.5473546343356 0 6.505149978319906 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 1.9265 + + 4 + NaN NaN 97401.2 NaN 21825 5295 27121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27123 105.96 NaN 69455 35 0 13157 0.261 + 22239 QNNFVGSNLD 10 33 554.2578094346896 1106.5010659361792 2 554.75927734375 MULTI HCD FTMS 0 0 0 27121 23748.96484375 1 0 0 2 Unmodified _QNNFVGSNLD_ REV__ENSG00000099822|ENST00000251287|HCN2;REV__ENST00000568218.2_1_15:32605934-32606516:-|nuORF;REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF 1.1933415558491238 0.46898715808974617 2 C 1 -1 0.9691 0 0 0.087582 0 0 468.41306652387294 532.0452364557249 1000.4583029795979 0 0 0 0 0 0 0 0 0 C 0.087582 - 1 + NaN NaN 95206.1 NaN 21826 5295 27121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27124 105.96 NaN 111210 35 0 15101 0.261 + -1 LYKCTESLF 9 46 580.7848269432232 NaN 0 580.7852172851562 PEAK HCD FTMS 0 0 0 27121 30388.302734375 0.3615374966736473 8 -0.06360626220703125 3 Carbamidomethyl (C) _LYKC(Carbamidomethyl (C))TESLF_ REV__ENSG00000134109|ENST00000256497|EDEM1;REV__nc|ENSG00000134109|Q92611-2|EDEM1 4.3292370932331545 0.2742679634796037 2 PE{I|L}Y 4 -1 15.918 0 0 1.3727 0 0 147.03005295371264 507.2584627740844 654.2885157277971 0 0 0 0 0 0 0 0 0 PE{I|L}Y 1.3727 - 22 + NaN NaN 110894.1 NaN 21827 5295 27121 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27126 105.97 NaN 361060 35 0 93524 0.411 + 17076 LYLAFPLAF 9 61 527.8022547764584 1053.5899566197168 2 527.80224609375 MULTI HCD FTMS 0 0 0 27125 268165.15625 1 0 0 1 Unmodified _LYLAFPLAF_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 79.93452657146344 0.0058735632865073864 2 [Y{I|L}]{I|L}A{M(Oxidation (M))|F}[{I|L}P]A{M(Oxidation (M))|F} 9 0 + 61.845 0 0 5.8699 5.8699 93.213 0 0 0 0.9370405245622493 0.9370405245622493 0.9370405245622493 61.84501246997776 0 2.774227503252014 0 0 0 + + [Y{I|L}]{I|L}A{M(Oxidation (M))|F}[{I|L}P]A{M(Oxidation (M))|F} 5.8699 + + 98 + NaN NaN 210737.6 NaN 21828 5296 27125 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27128 105.97 NaN 456210 35 0 205190 0.411 + 30158 VGVGGSCCQ 9 54 405.16751250036685 808.3204720675337 2 405.16790771484375 MULTI HCD FTMS 0 0 0 27127 109254.15625 0.04620782718126482 27 -0.218719482421875 1 Unmodified _VGVGGSCCQ_ ENST00000589009.5_1_19:10227257-10229639:-|nuORF 1.844237919475145 0.33703635659052655 2 {I|L} 1 9 13.979 0 0 1.7294 0 0 155.09447082814341 537.1188839398029 692.2133547679464 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 4 + NaN NaN 217767.3 NaN 21829 5297 27127 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27131 105.99 NaN 91574 35 0 13721 0.412 -1 LCILLVLL 8 46 499.8195212271087 997.6244895210174 2 499.8195495605469 MULTI HCD FTMS 0 0 0 27130 61771.35546875 0.6457812247828919 13 -0.10363006591796875 1 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))LC(Carbamidomethyl (C))ILLVLL_ ENST00000358912.4_1_2:64327626-64331869:-|nuORF;ENST00000466177.6_1_2:64327607-64331869:-|nuORF 6.354104778181461 0.5325651638111438 2 {I|L}{I|L} 2 -1 25.969 0 0 2.6031 0 0 753.4453022230474 0 753.4453022230474 0 24.3753063169585 0 0 0 0.5 0 0 0 {I|L}{I|L} 2.6031 + + 4 NaN NaN 109154.2 NaN 21830 5299 27130 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27133 105.99 NaN 101640 35 0 7885.4 0.411 + 13856 KYPSPFFVF 9 57 566.2974637166983 NaN 0 566.2976684570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 18.1463463914782 0.1998403495282098 2 V 1 8 14.732 0 0 1.303 0 0 165.0796779572965 863.409976304446 1028.4896542617425 0 0 0 0 0 0.7742275032520141 0 0 0 + V 1.303 + + 13 + NaN NaN 117341.2 NaN 21831 5300 27132 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27136 106.01 NaN 90894 35 0 8524.4 0.411 -1 0 58 580.8037565033469 1159.5929600734937 2 581.3067016601562 MULTI HCD FTMS 0 0 0 27135 14245.2470703125 0.06775556252907698 -30 0.2691497802734375 1 NaN NaN 2 Y{I|L}EPE 5 -1 49.821 0 0 4.2964 0 0 510.2812498310751 0 510.2812498310751 0 45.21652514092061 0 0 0 1.1861818737241734 0 0 0 Y{I|L}EPE 4.2964 - 72 NaN NaN 126862.9 NaN 21832 5302 27135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27139 106.02 NaN 647360 35 0 99769 0.327 + 17537 LYVDSLFFL 9 50 558.80239729164 1115.5902416500799 2 558.8026733398438 MULTI HCD FTMS 0 0 0 27138 507973.21875 0.2440677127817805 18 -0.15187835693359375 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 97.07464715276575 0.004340583992084827 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 93.343 0 0 8.3671 8.3671 97.875 0 0 0 17.069167772559908 82.37388445241912 17.069167772559908 93.34298458249968 0 2.5 1.3979400086720375 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 8.3671 + + 215 NaN NaN 194135.7 NaN 21833 5304 27138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27140 106.03 NaN 52274 35 0 5245.9 0.268 + 29269 TYLPDFLDYF 10 28 647.305366130769 NaN 0 647.3050537109375 PEAK HCD FTMS 0 0 0 27138 23132.072265625 0.4362425671744441 -4 0.0285797119140625 2 Unmodified _TYLPDFLDYF_ ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L 24.990960013464015 0.24020601536510064 2 YD{I|L}{[QS]|[NT]}[SG]{I|L} 8 9 23.633 0 0 1.8283 0 0 165.08789396962044 261.08698450260005 426.1748784722205 0 0 0 0 0 1.4247425010840047 0 0 0 YD{I|L}{[QS]|[NT]}[SG]{I|L} 1.8283 - 21 + NaN NaN 106717.3 NaN 21834 5304 27138 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27142 106.03 NaN 128180 35 0 33650 0.327 -1 SARCMCGRR 9 35 585.2580597770896 1168.501566620979 2 585.2582397460938 MULTI HCD FTMS 0 0 0 27141 42314.76171875 0.0841894598689239 19 -0.1585540771484375 1 2 Carbamidomethyl (C),Oxidation (M) _SARC(Carbamidomethyl (C))M(Oxidation (M))C(Carbamidomethyl (C))GRR_ ENSG00000099622|ENST00000587896|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP 1.844237919475145 0.33703635659052655 2 SA 2 -1 14.949 0 0 1.2793 0 0 0 1007.3973245831339 1007.3973245831339 7.95880017344075 0 0 0 0 0 0 0 0 SA 1.2793 + + 3 + NaN NaN 106476.1 NaN 21835 5305 27141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27143 106.04 NaN 165290 35 0 28300 0.261 + -1 YLRMGHRK 8 32 538.7932795455094 1075.5720061578188 2 538.7926025390625 MULTI HCD FTMS 0 0 0 27141 17482.640625 0.40346847833210714 13 -0.11011505126953125 2 Oxidation (M) _YLRM(Oxidation (M))GHRK_ REV__tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118533.6 NaN 21836 5305 27141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27146 106.05 NaN 52575 35 0 7411.2 0.411 -1 LCMVWSPRQ 9 43 588.7863451197945 NaN 0 588.7868041992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _LC(Carbamidomethyl (C))MVWSPRQ_ ENST00000289371.10_1_2:99999292-100006235:+|nuORF 4.3292370932331545 0.2742679634796037 2 P 1 -1 5.4846 0 0 0.46655 0 0 164.0198205112702 911.4480074518186 1075.467827963089 0 0 0 0 0 0 0 0 0 P 0.46655 + + 5 + NaN NaN 115182.5 NaN 21837 5307 27145 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27148 106.06 NaN 41338 35 0 3565.3 0.411 -1 DYMNLLGMIF 10 41 624.7855997428646 1247.5566465525292 2 624.785888671875 MULTI HCD FTMS 0 0 0 27147 13229.505859375 0.20329435864215176 -1 0.0072021484375 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 19.361941925380144 0.3300069447713393 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 32.218 0 0 2.5825 0 0 652.2511973533125 0 652.2511973533125 0 32.21848749616356 0 0 0 1 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.5825 + + 8 NaN NaN 100915.5 NaN 21838 5308 27147 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27151 106.07 NaN 1746600 35 0 286360 0.327 -1 0 59 569.7937493903412 1137.5729458474823 2 569.8129272460938 MULTI HCD FTMS 0 0 0 27150 61760.5703125 0.09303305667012406 24 -0.21283721923828125 1 NaN NaN 2 {I|L}YVD 4 -1 48.875 0 0 4.2964 0 0 0 644.3070162408811 644.3070162408811 6.3071968632008435 0 0 0 0 1.0114393726401687 1.6989700043360187 0 0 {I|L}YVD 4.2964 - 295 + NaN NaN 352748.7 NaN 21839 5310 27150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27152 106.08 NaN 297370 35 0 54922 0.261 + 33181 YEVEKIILF 9 50 577.3287219562364 1152.6428909792728 2 577.328857421875 MULTI HCD FTMS 0 0 0 27150 49686.15625 0.43758897367060523 1 -0.01247406005859375 2 Unmodified _YEVEKIILF_ REV__ENST00000501499.1_1_12:98880649-98880853:-|nuORF 24.020572477871973 0.15282392193088168 2 T{I|L}{I|L}{M(Oxidation (M))|F} 4 -1 49.993 0 0 4.3372 0 0 660.3465556560601 0 660.3465556560601 0 49.992822134202015 0 0 0 1.4247425010840047 0 0.3807196863200844 0 T{I|L}{I|L}{M(Oxidation (M))|F} 4.3372 - 16 NaN NaN 134828.5 NaN 21840 5310 27150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27153 106.08 NaN 78244 35 0 6952.7 0.261 + 6192 FPELVLPVVL 10 33 563.3496291346263 1124.6847053360525 2 563.3499145507812 MULTI HCD FTMS 0 0 0 27150 16216.0107421875 0.16585374813682657 -6 0.04805755615234375 3 Unmodified _FPELVLPVVL_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF 13.90604991867851 0.3810395177745597 2 {I|L}[VP]V{I|L} 5 5 30.713 0 0 2.7308 0 0 585.3149171305405 0 585.3149171305405 0 30.713337517843655 0 0 0 0.8494850021680094 0 0 0 + {I|L}[VP]V{I|L} 2.7308 + + 5 NaN NaN 99944.5 NaN 21841 5310 27150 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27156 106.09 NaN 80049 35 0 15295 0.412 + 13652 KYPENFFLL 9 41 585.813299404433 1169.612045875666 2 585.8136596679688 MULTI HCD FTMS 0 0 0 27155 39292.03125 0.7346783695053654 29 -0.2644805908203125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 30.005 0 0 2.5654 0 0 778.3647938459 0 778.3647938459 0 29.62648087639419 0 0 0 0.3807196863200844 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.5654 + + 24 NaN NaN 117716 NaN 21842 5312 27155 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27158 106.1 NaN 234370 35 0 95512 0.327 + -1 VAAAGCTC 8 38 405.16751250036685 808.3204720675337 2 405.16790771484375 MULTI HCD FTMS 0 0 0 27157 198149.65625 0.08380518770449093 43 -0.387542724609375 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 13.979 0 0 1.7294 0 0 155.0944527073563 537.1193663536683 692.2138190610247 0 0 0 0 0 0.8494850021680094 0 0 0 {I|L} 1.7294 - 5 + NaN NaN 125448.2 NaN 21843 5313 27157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27159 106.1 NaN 97681 35 0 7218.1 0.261 + 23240 RGGGGYRHSW 10 35 566.7749566767048 NaN 0 566.7743530273438 PEAK HCD FTMS 0 0 0 27157 12802.3388671875 0.6819646661682431 16 -0.1446380615234375 2 Unmodified _RGGGGYRHSW_ REV__ENSG00000175718|ENST00000424776|RBMXL3 8.745405648335112 0.33269943387702366 2 S 1 -1 16.237 0 0 1.435 0 0 840.4139442598565 201.06708704166252 1041.4810313015191 0 0 0 0 0 0.9247425010840047 0 0 0 S 1.435 + + 7 + NaN NaN 113327.7 NaN 21844 5313 27157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27160 106.11 NaN 24795 35 0 3932.9 0.261 + 32870 WYFEHQLKH 9 25 644.314697265625 NaN 0 644.314697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _WYFEHQLKH_ ENSG00000115816|ENST00000234170|CEBPZ 0.5247636613948944 0.2927039108006614 2 R 1 9 2.2185 0 0 0.17256 0 0 546.9630708966812 579.5349825494749 1126.498053446156 0 0 0 0 0 0 0 0 0 R 0.17256 - 1 + NaN NaN 105125.1 NaN 21845 5313 27157 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27162 106.11 NaN 421140 35 0 88196 0.327 + 17077 LYLAFPLAF 9 47 527.8022547764584 1053.5899566197168 2 527.8024291992188 MULTI HCD FTMS 0 0 0 27161 62581.2890625 0.23336845822041805 18 -0.15627288818359375 1 Unmodified _LYLAFPLAF_ ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 56.04830969593885 0.023109620888794903 2 A{M(Oxidation (M))|F}[{I|L}P]A{M(Oxidation (M))|F} 6 3 45.891 0 0 4.3556 0 0 389.23033339668126 0 389.23033339668126 0 41.91122510072759 0 0 0 2.1989700043360187 0 0 0 + A{M(Oxidation (M))|F}[{I|L}P]A{M(Oxidation (M))|F} 4.3556 + + 39 NaN NaN 161387.3 NaN 21846 5314 27161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27163 106.12 NaN 32432 35 0 4928 0.261 + -1 YNIKHFFMK 9 26 622.3169226484833 NaN 0 622.31689453125 PEAK HCD FTMS 0 0 0 27161 10408.8046875 0.5064787807729375 -2 0.01998138427734375 2 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 3.944395688203298 0.27613285122220627 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 277.1065492991166 849.4040028139389 1126.5105521130554 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 112359.5 NaN 21847 5314 27161 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27165 106.12 NaN 110130 35 0 10328 0.412 + 13857 KYPSPFFVF 9 62 566.2974637166983 NaN 0 566.2971801757812 PEAK HCD FTMS 0 0 0 27164 5328.84765625 0.13457811732989028 7 -0.05458831787109375 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.145325121643443 2 V{M(Oxidation (M))|F} 2 7 14.949 0 0 1.3222 0 0 165.07998023539977 716.3489473932249 881.4289276286247 0 0 0 0 0 0.6989700043360187 0 0 0 + V{M(Oxidation (M))|F} 1.3222 + + 10 + NaN NaN 125414 NaN 21848 5315 27164 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27167 106.13 NaN 307680 35 0 39014 0.411 -1 0 79 580.8037565033469 1159.5929600734937 2 580.8038330078125 MULTI HCD FTMS 0 0 0 27166 143152.96875 0.47259392748792467 -16 0.1334381103515625 1 NaN NaN 2 {I|L}ME{I|L}YP 6 -1 78.964 0 0 6.8096 0 0 0 410.2061861627563 410.2061861627563 56.056518697048716 0 0 0 0 2.110924374808178 1.6989700043360187 0.75 0 {I|L}ME{I|L}YP 6.8096 - 337 + NaN NaN 203768.6 NaN 21849 5316 27166 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27169 106.14 NaN 119860 35 0 13331 0.411 -1 YQALLETMF 9 67 566.2728180304058 NaN 0 566.2721557617188 PEAK HCD FTMS 0 0 0 27168 23894.26171875 0.6128844861526321 -10 0.0860137939453125 1 Oxidation (M) _YQALLETM(Oxidation (M))F_ ENST00000491680.6_1_2:30670231-30775468:+|nuORF 7.289230182591677 0.2599242500475609 2 S 1 -1 9.2917 0 0 0.82189 0 0 203.08334250436775 837.3889254205686 1040.4722679249364 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.82189 - 23 + NaN NaN 138780.4 NaN 21850 5317 27168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27171 106.14 NaN 171490 35 0 26440 0.327 + 17538 LYVDSLFFL 9 41 558.80239729164 1115.5902416500799 2 558.8026123046875 MULTI HCD FTMS 0 0 0 27170 138775.640625 0.0666780293664253 32 -0.2928619384765625 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 74.42276476219924 0.007657080072768255 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 76.621 0 0 6.8682 6.8682 94.446 0 0 0 4.762036441594191 69.63160941989898 4.762036441594191 44.76403468139864 0 2.305462187404089 0 0.8494850021680094 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L};[Y{I|L}][YT]{[TV]|[{I|L}S]}P{M(Oxidation (M))|F}{I|L} 6.8682;2.8556 +;- + 167 NaN NaN 117889.3 NaN 21851 5318 27170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27172 106.15 NaN 34386 35 0 4932.3 0.261 + 23290 RHRGLRPRR 9 24 602.3746348344373 NaN 0 602.3140869140625 PEAK HCD FTMS 0 0 0 27170 4649.65283203125 0.44719853101746293 -1 0.0075531005859375 2 Unmodified _RHRGLRPRR_ ENSG00000164850|ENST00000397088|GPER1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117505.2 NaN 21852 5318 27170 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27174 106.15 NaN 85378 35 0 7641.7 0.411 + 29270 TYLPDFLDYF 10 45 647.305366130769 NaN 0 647.3056640625 PEAK HCD FTMS 0 0 0 27173 18001.220703125 0.3394809873335326 9 -0.08315277099609375 1 Unmodified _TYLPDFLDYF_ ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L 49.55428908609986 0.0825927681964888 2 YD{I|L}{M(Oxidation (M))|F}[DP]{I|L} 7 7 36.999 0 0 2.8624 0 0 165.07933158407974 261.0870760553344 426.16640763941416 0 0 0 0 0 2.305462187404089 0 0 0 YD{I|L}{M(Oxidation (M))|F}[DP]{I|L} 2.8624 - 47 + NaN NaN 119466.2 NaN 21853 5319 27173 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27176 106.16 NaN 59073 35 0 7253.6 0.411 + -1 LFCVCVCGVN 10 37 585.7597344657847 NaN 0 585.7598876953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))VC(Carbamidomethyl (C))VCGVN_ REV__ENST00000252818.4_1_19:18390759-18390948:-|nuORF 7.910154910731844 0.33341429274560913 2 {I|L}{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.93793 0 0 130.99205483213183 775.3378389947874 906.3298938269193 0 0 0 0 0 0 0 0 0 {I|L}{M(Oxidation (M))|F} 0.93793 + + 4 + NaN NaN 114166 NaN 21854 5320 27175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27178 106.17 NaN 131060 35 0 32646 0.411 + 15089 LMEKCYHRP 9 53 588.7861886377955 1175.5578243423909 2 588.785400390625 MULTI HCD FTMS 0 0 0 27177 54272.0625 1 0 0 1 Unmodified _LMEKCYHRP_ ENST00000250076.7_2_17:5015492-5015627:-|nuORF 13.90604991867851 0.24021115267848145 2 {I|L}ME{I|L}W 5 6 34.285 0 0 2.9165 0 0 0 500.19062219791255 500.19062219791255 18.711375162600703 0 0 0 0 0.9247425010840047 0 0 0 {I|L}ME{I|L}W 2.9165 - 72 + NaN NaN 131841.4 NaN 21855 5321 27177 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27180 106.17 NaN 55455 35 0 7186.2 0.327 -1 DYMNLLGMIF 10 28 624.7858044313654 1247.5570559295306 2 624.7868041992188 MULTI HCD FTMS 0 0 0 27179 23943.716796875 0.6025291889799995 9 -0.0844268798828125 1 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 10.799506525563784 0.4100970765206026 2 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 5 -1 31.466 0 0 2.5222 0 0 652.251268455275 0 652.251268455275 0 31.46591250700361 0 0 0 0.9247425010840047 0 0 0 {I|L}{[CT]|[{M(Oxidation (M))|F}G]}{I|L}{M(Oxidation (M))|F} 2.5222 + + 7 NaN NaN 100594.8 NaN 21856 5322 27179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27181 106.18 NaN 111770 35 0 27861 0.261 + 26166 SPMDIFDMF 9 42 551.7328930781708 1101.4512332231416 2 551.7327270507812 MULTI HCD FTMS 0 0 0 27179 10066.3046875 0.495503410201551 4 -0.04024505615234375 2 Unmodified _SPMDIFDMF_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 11.640296217721598 0.25978676193971967 2 M{M(Oxidation (M))|F} 2 7 22.959 0 0 2.0844 0 0 805.3333876194291 0 805.3333876194291 0 12.501225267834 0 0 0 0.5 0 0 0 + M{M(Oxidation (M))|F} 2.0844 + + 5 + NaN NaN 122172.9 NaN 21857 5322 27179 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27185 106.2 NaN 4667700 35 0 851010 0.327 + 6197 FPELYPFLL 9 69 569.8128731066784 1137.6111932801566 2 569.8131103515625 MULTI HCD FTMS 0 0 0 27184 485236.75 0.1678599810618329 -7 0.0597991943359375 1 Unmodified _FPELYPFLL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 89.42679046578446 0.004540987215715461 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 79.104 0 0 6.9535 6.9535 86.551 0 0 0 10.791812460476251 16.478174818886373 10.791812460476251 2.2134030500787816 0 1.774227503252014 1 0.6747425010840047 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}YP{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PEYP{M(Oxidation (M))|F}{I|L}{I|L};[EP]{M(Oxidation (M))|F}{I|L}YP{M(Oxidation (M))|F}{I|L}{I|L};[EP]{I|L}{M(Oxidation (M))|F}YP{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}E{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}PE{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L};[EP]{M(Oxidation (M))|F}{I|L}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L};[EP]{I|L}{M(Oxidation (M))|F}{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}Y{I|L}{I|L} 6.9535;6.7589;6.0049;5.6555;5.5855;3.9867;3.7922;3.0381;2.6887;2.6187 -;+;-;-;-;-;-;-;-;- + 561 NaN NaN 759553.5 NaN 21858 5325 27184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27186 106.21 NaN 133110 35 0 11899 0.261 + 6193 FPELVLPVVL 10 38 563.3496291346263 1124.6847053360525 2 563.3499755859375 MULTI HCD FTMS 0 0 0 27184 12711.736328125 0.1300128094921445 8 -0.0737152099609375 2 Unmodified _FPELVLPVVL_ ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF 19.256988751693697 0.33098864134661865 2 {I|L}[VP]V{I|L} 5 5 34.961 0 0 3.1085 0 0 585.3155345937737 0 585.3155345937737 0 27.971062485323515 0 0 0 1.274227503252014 0 0 0 + {I|L}[VP]V{I|L} 3.1085 + + 11 NaN NaN 107777.6 NaN 21859 5325 27184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27187 106.21 NaN 219450 35 0 63235 0.261 + 15090 LMEKCYHRP 9 38 588.7861886377955 1175.5578243423909 2 588.7872924804688 MULTI HCD FTMS 0 0 0 27184 10270.955078125 0.18924939655877276 4 -0.03997039794921875 3 Unmodified _LMEKCYHRP_ ENST00000250076.7_2_17:5015492-5015627:-|nuORF 13.90604991867851 0.24021115267848145 2 {I|L}ME{I|L} 4 6 39.412 0 0 3.3527 0 0 0 686.2860201471311 686.2860201471311 36.64824052527269 0 0 0 0 0.9247425010840047 0 0.4247425010840047 0 {I|L}ME{I|L} 3.3527 - 50 + NaN NaN 126297.5 NaN 21860 5325 27184 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27189 106.22 NaN 120700 35 0 17334 0.411 + 33693 YKRRDTFF 8 56 566.7993305669846 NaN 0 566.80078125 PEAK HCD FTMS 0 0 0 27188 8768.154296875 0.32551182264781137 -11 0.0948333740234375 1 Unmodified _YKRRDTFF_ REV__ENST00000466112.5_1_3:52561592-52561760:-|nuORF 4.75600775471527 0.38822285293237185 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.48468 0 0 204.14184359469442 764.3952120416624 968.5370556363569 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.48468 - 10 + NaN NaN 123266.8 NaN 21861 5326 27188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27191 106.22 NaN 68496 35 0 15314 0.327 + -1 VAAAGCTC 8 38 405.16751250036685 808.3204720675337 2 405.16796875 MULTI HCD FTMS 0 0 0 27190 58589.703125 0.024779861650358146 57 -0.5300140380859375 1 2 Carbamidomethyl (C) _VAAAGC(Carbamidomethyl (C))TC(Carbamidomethyl (C))_ REV__ENSG00000166855|ENST00000300107|CLPX;REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 5.4846 0 0 0.67851 0 0 155.0942355013696 537.1187838190061 692.2130193203757 0 0 0 0 0 0 0 0 0 {I|L} 0.67851 - 4 + NaN NaN 97612.9 NaN 21862 5327 27190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27192 106.23 NaN 340340 35 0 23272 0.261 + 10029 IFADTLTLLF 10 63 577.3287219562364 1152.6428909792728 2 577.8302001953125 MULTI HCD FTMS 0 0 0 27190 19437.330078125 0.2323412564448881 17 -0.16573333740234375 2 Unmodified _IFADTLTLLF_ ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4 30.636539890814138 0.2266618088935899 2 T{I|L}{I|L}{M(Oxidation (M))|F} 4 6 53.245 0 0 4.6194 0 0 660.3471341133977 0 660.3471341133977 0 35.28659694992122 0 0 0 1.75 0 0.3807196863200844 0 + T{I|L}{I|L}{M(Oxidation (M))|F} 4.6194 + + 150 NaN NaN 143530.8 NaN 21863 5327 27190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27193 106.23 NaN 117260 35 0 38327 0.261 -1 0 33 585.2580597770896 1168.501566620979 2 585.2569580078125 MULTI HCD FTMS 0 0 0 27190 13525.32421875 0.02690998824705836 41 -0.36297607421875 3 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.46937 0 0 129.9857717985165 922.4066866510374 1052.392458449554 0 0 0 0 0 0 0 0 0 {I|L} 0.46937 - 12 + NaN NaN 110163.7 NaN 21864 5327 27190 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27196 106.24 NaN 189200 35 0 24779 0.327 + 26248 SQEETGMPNKA 11 37 596.2686356788599 1190.5227184245198 2 596.2688598632812 MULTI HCD FTMS 0 0 0 27195 53191.890625 0.4568994135890184 -3 0.027496337890625 1 Unmodified _SQEETGMPNKA_ ENSG00000175556|ENST00000371628|LONRF3;ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-2|LONRF3;nc|ENSG00000175556|Q496Y0-3|LONRF3 1.0714618166137932 0.41422159895841093 2 G 1 10 6.9897 0 0 0.58711 0 0 100.05421093059711 1030.4240196650921 1130.4782305956892 0 0 0 0 0 0 0 0 0 + G 0.58711 + + 3 + NaN NaN 136780.7 NaN 21865 5329 27195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27197 106.25 NaN 41610 35 0 3823.1 0.261 + 21950 QEHDIAIKFF 10 30 624.327038223904 NaN 0 624.3260498046875 PEAK HCD FTMS 0 0 0 27195 12372.6767578125 0.6068162107059184 -4 0.03997039794921875 2 Unmodified _QEHDIAIKFF_ ENST00000425026.1_1_Y:10028050-10028227:-|nuORF 2.735195868890462 0.33784334045437464 2 {I|L} 1 9 3.0989 0 0 0.24858 0 0 651.3342999812079 479.19639002017817 1130.5306900013861 0 0 0 0 0 0 0 0 0 + {I|L} 0.24858 + + 1 + NaN NaN 93226.4 NaN 21866 5329 27195 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27199 106.25 NaN 389660 35 0 56291 0.411 -1 0 88 580.8037565033469 1159.5929600734937 2 580.803955078125 MULTI HCD FTMS 0 0 0 27198 136028.734375 0.4490745416657167 -2 0.016357421875 1 NaN NaN 2 {I|L}ME{I|L}YP 6 -1 76.191 0 0 6.5705 0 0 0 410.20530115299067 410.20530115299067 29.554687406276017 0 0 0 0 1.7302046884880937 1.6989700043360187 0.7742275032520141 0 {I|L}ME{I|L}YP 6.5705 - 504 + NaN NaN 209999.4 NaN 21867 5330 27198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27201 106.26 NaN 65024 35 0 8860.2 0.411 + 13653 KYPENFFLL 9 45 585.8131157846246 1169.6116786360492 2 585.8150634765625 MULTI HCD FTMS 0 0 0 27200 27752.068359375 0.5221359515990177 -9 0.0844268798828125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 36.198 0 0 3.0949 0 0 778.3629017560562 0 778.3629017560562 0 18.239087409443187 0 0 0 1 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 3.0949 + + 14 NaN NaN 113302.5 NaN 21868 5331 27200 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27203 106.27 NaN 239740 35 0 38968 0.327 + 17539 LYVDSLFFL 9 38 558.8023048748913 1115.5900568165825 2 558.802001953125 MULTI HCD FTMS 0 0 0 27202 86897.03125 0.8313919795948007 -2 0.01512908935546875 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.00464763827098139 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 80.372 0 0 7.2044 7.2044 95.872 0 0 0 4.762036441594191 69.4028219670956 4.762036441594191 80.37192209717617 0 2.4247425010840047 0 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.2044 + + 177 NaN NaN 132441.7 NaN 21869 5332 27202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27204 106.27 NaN 38107 35 0 7616 0.261 + 9595 HSGALKPIFL 10 25 541.8229370117188 NaN 0 541.8229370117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _HSGALKPIFL_ REV__ENSG00000112761|ENST00000368666|CCN6;REV__nc|ENSG00000112761|O95389-2|CCN6 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91916.3 NaN 21870 5332 27202 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27206 106.28 NaN 51754 35 0 4635.8 0.411 + 29271 TYLPDFLDYF 10 48 647.3057779751084 NaN 0 647.3057861328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TYLPDFLDYF_ ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L 12.240655878213236 0.32970798410958835 2 {I|L} 1 9 14.049 0 0 1.0869 0 0 443.1704415929917 733.3171480768186 1176.4875896698104 0 0 0 0 0 0.7059771852360797 0 0 0 + {I|L} 1.0869 + + 10 + NaN NaN 108972.6 NaN 21871 5333 27205 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27209 106.29 NaN 105360 35 0 15987 0.327 + 13858 KYPSPFFVF 9 35 566.2974637166983 NaN 0 566.2977905273438 PEAK HCD FTMS 0 0 0 27208 18370.89453125 0.4639502870347425 27 -0.248504638671875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 12.240655878213236 0.2359303321180293 2 S 1 8 5.4846 0 0 0.48511 0 0 203.13800497070275 837.3881319635374 1040.5261369342402 0 0 0 0 0 0 0 0 0 + S 0.48511 + + 2 + NaN NaN 101083.5 NaN 21872 5335 27208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27210 106.29 NaN 33103 35 0 4166.7 0.261 + -1 FAVCCLLRIS 10 19 619.8234252929688 NaN 0 619.8234252929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _FAVC(Carbamidomethyl (C))C(Carbamidomethyl (C))LLRIS_ REV__nc|ENSG00000211713|A0A1B0GX49|TRBV6-4 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102039.4 NaN 21873 5335 27208 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27212 106.3 NaN 92361 35 0 23296 0.327 + 26167 SPMDIFDMF 9 34 551.7327027671007 1101.4508526010013 2 551.7330322265625 MULTI HCD FTMS 0 0 0 27211 12664.15234375 0.19786512249149604 -4 0.03308868408203125 1 Unmodified _SPMDIFDMF_ ENSG00000086061|ENST00000330899|DNAJA1;ENSG00000140403|ENST00000394852|DNAJA4;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4;nc|ENSG00000140403|Q8WW22-3|DNAJA4 11.640296217721598 0.25978676193971967 2 HM{M(Oxidation (M))|F} 3 7 21.031 0 0 1.9094 0 0 668.2670585109607 0 668.2670585109607 0 21.030768805449185 0 0 0 0.5 0 0 0 HM{M(Oxidation (M))|F} 1.9094 - 24 + NaN NaN 100842.9 NaN 21874 5336 27211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27213 106.3 NaN 75214 35 0 8590.7 0.261 + 13654 KYPENFFLL 9 31 585.8131157846246 1169.6116786360492 2 585.8134765625 MULTI HCD FTMS 0 0 0 27211 21970.470703125 0.4133591946770796 -4 0.03308868408203125 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 12.240655878213236 0.2545997876781172 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3603382794937 0 778.3603382794937 0 28.97940008672037 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 5 NaN NaN 98416.4 NaN 21875 5336 27211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27214 106.31 NaN 138420 35 0 16452 0.261 -1 YQALLETMF 9 51 566.2728180304058 NaN 0 566.2726440429688 PEAK HCD FTMS 0 0 0 27211 14825.3759765625 0.3802688295778163 9 -0.09604644775390625 3 Oxidation (M) _YQALLETM(Oxidation (M))F_ ENST00000491680.6_1_2:30670231-30775468:+|nuORF 4.3292370932331545 0.2742679634796037 2 VW 2 -1 6.4537 0 0 0.57085 0 0 165.0303051702627 677.3167208307249 842.3470260009876 0 0 0 0 0 0 0 0 0 VW 0.57085 - 11 + NaN NaN 110575.7 NaN 21876 5336 27211 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27217 106.32 NaN 220920 35 0 21315 0.327 + -1 HVKYMGVQF 9 46 562.7817731879908 1123.5489934427815 2 563.3032836914062 MULTI HCD FTMS 0 0 0 27216 3652.480224609375 0.1871468610639592 11 -0.106292724609375 1 Oxidation (M) _HVKYM(Oxidation (M))GVQF_ REV__ENSG00000142733|ENST00000357582|MAP3K6;REV__nc|ENSG00000142733|O95382-2|MAP3K6;REV__nc|ENSG00000142733|O95382-3|MAP3K6 7.910154910731844 0.2910521888787154 2 {I|L}VQ{M(Oxidation (M))|F} 4 -1 27.964 0 0 2.4889 0 0 618.2593338742253 0 618.2593338742253 0 11.76599703664159 0 0 0 0 0 0 0.3807196863200844 {I|L}VQ{M(Oxidation (M))|F} 2.4889 - 44 + NaN NaN 137181.5 NaN 21877 5338 27216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27218 106.32 NaN 90741 35 0 6225.5 0.261 -1 DYMNLLGMIF 10 40 624.7854382359493 1247.5563235386985 2 624.7859497070312 MULTI HCD FTMS 0 0 0 27216 19597.642578125 0.6309894914456342 -2 0.01995849609375 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 12.240655878213236 0.39661705172222156 2 {I|L}[WM]{M(Oxidation (M))|F} 4 -1 19.609 0 0 1.5718 0 0 652.2519398419937 0 652.2519398419937 0 14.124628150806373 0 0 0 0.8807196863200843 0 0 0 {I|L}[WM]{M(Oxidation (M))|F} 1.5718 - 12 NaN NaN 117523.7 NaN 21878 5338 27216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27219 106.33 NaN 54110 35 0 6583.2 0.263 + 32360 VYVLYPCE 8 36 493.2409791937086 NaN 0 493.2414245605469 PEAK HCD FTMS 0 0 0 27216 14517.0634765625 0.5835480792595201 29 -0.25817108154296875 3 Unmodified _VYVLYPCE_ REV__ENSG00000176170|ENST00000592299|SPHK1;REV__nc|ENSG00000176170|Q9NYA1-2|SPHK1;REV__nc|ENSG00000176170|Q9NYA1-3|SPHK1 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115700.3 NaN 21879 5338 27216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27221 106.33 NaN 2428900 35 0 445710 0.327 + 6198 FPELYPFLL 9 62 569.8128731066784 1137.6111932801566 2 569.8130493164062 MULTI HCD FTMS 0 0 0 27220 1320357.25 0.45675671304750465 7 -0.07049560546875 1 Unmodified _FPELYPFLL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 77.98433622928108 0.006504613272346738 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 68.197 0 0 5.9948 5.9948 85.097 0 0 0 2.922152515121226 57.39532286990432 2.922152515121226 2.724928274552596 0 1.774227503252014 0 0.7302046884880937 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L};{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}E{I|L}YP{M(Oxidation (M))|F}{I|L}{I|L} 5.9948;5.7553 -;+ + 150 NaN NaN 460445.8 NaN 21880 5339 27220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27222 106.34 NaN 312700 35 0 45706 0.262 + 9573 HRRPSPRRLPR 11 56 476.6237756780038 1426.8494976342115 3 476.6235656738281 MULTI HCD FTMS 0 0 0 27220 82687.7109375 0.2895219420635903 -17 0.157684326171875 2 Unmodified _HRRPSPRRLPR_ ENSG00000230778|ENST00000434396|ANKRD63 0.4545168274142398 0.41692731010159206 2 P 1 10 6.5938 0 0 0.46212 0 0 792.4726350278537 534.2932833307249 1326.7659183585786 0 0 0 0 0 0.5 0 0 0 + P 0.46212 + + 10 + NaN NaN 146802.5 NaN 21881 5339 27220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27223 106.34 NaN 20533 35 0 4314 0.261 -1 DSEKESDEDC 10 17 607.2100037053589 NaN 0 607.2100219726562 PEAK HCD FTMS 0 0 0 27220 5619.1142578125 0.43059819379898273 5 -0.055877685546875 3 Carbamidomethyl (C) _DSEKESDEDC(Carbamidomethyl (C))_ ENSG00000102241|ENST00000218364|HTATSF1 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111746.4 NaN 21882 5339 27220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27225 106.35 NaN 98825 35 0 27013 0.327 -1 MCSGQAGV 8 37 405.16751250036685 808.3204720675337 2 405.1677551269531 MULTI HCD FTMS 0 0 0 27224 83998.9296875 0.035526410707246804 70 -0.6645965576171875 1 Carbamidomethyl (C) _MC(Carbamidomethyl (C))SGQAGV_ ENST00000401738.3_1_2:42530513-42531625:+|nuORF 0.7936320650641473 0.540814922690045 2 {I|L} 1 -1 10.485 0 0 1.2971 0 0 155.09441542996097 537.1190279596311 692.2134433895922 0 0 0 0 0 0.5 0 0 0 {I|L} 1.2971 - 3 + NaN NaN 103402.8 NaN 21883 5340 27224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27226 106.35 NaN 129450 35 0 34250 0.261 -1 MSILLPNMAE 10 35 588.7861886377955 1175.5578243423909 2 588.7860107421875 MULTI HCD FTMS 0 0 0 27224 48927.3671875 0.9015203206530064 19 -0.165924072265625 2 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))MSILLPNM(Oxidation (M))AE_ ENSG00000204116|ENST00000373502|CHIC1;nc|ENSG00000204116|Q5VXU3-2|CHIC1 4.5288652416199255 0.4513317009562028 2 {I|L}{I|L} 2 -1 20.969 0 0 1.7838 0 0 0 946.3664238699092 946.3664238699092 5.479465618955501 0 0 0 0 0 0 0 0 {I|L}{I|L} 1.7838 + + 4 + NaN NaN 112740.1 NaN 21884 5340 27224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27228 106.36 NaN 28951 35 0 2798.3 0.412 + 23291 RHRGLRPRR 9 23 602.3763955878734 NaN 0 602.3134155273438 PEAK HCD FTMS 0 0 0 27227 15473.7958984375 1 0 0 1 Unmodified _RHRGLRPRR_ ENSG00000164850|ENST00000397088|GPER1 2.0597508629832335 0.2852655770354268 2 T 1 9 6.9897 0 0 0.58115 0 0 165.20343898357447 933.4629000299436 1098.6663390135182 0 0 0 0 0 0 0 0 0 T 0.58115 - 1 + NaN NaN 98297.7 NaN 21885 5341 27227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27230 106.36 NaN 185710 35 0 14374 0.327 + 21181 PPTRPRRRRRP 11 73 482.29927846794567 1443.876006004037 3 482.2989807128906 MULTI HCD FTMS 0 0 0 27229 68928.8359375 0.3654463267737745 -12 0.11098480224609375 1 Unmodified _PPTRPRRRRRP_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 1.3296431237094175 0.4130893034510334 2 P 1 -1 5.4846 0 0 0.37985 0 0 1047.641094970637 296.1601656549438 1343.8012606255807 0 0 0 0 0 0 0 0 0 P 0.37985 + + 8 + NaN NaN 133237 NaN 21886 5342 27229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27231 106.37 NaN 36170 35 0 3916.2 0.261 -1 0 28 541.4940185546875 NaN 0 541.4940185546875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 Y 1 -1 3.9794 0 0 0.36813 0 0 396.0603744123062 518.8278761526973 914.8882505650035 0 0 0 0 0 0 0 0 0 Y 0.36813 - 1 + NaN NaN 95056.8 NaN 21887 5342 27229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27232 106.37 NaN 23401 35 0 3148.5 0.261 + 18002 MLHHCIARWI 10 23 640.3290405273438 NaN 0 640.3290405273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _MLHHCIARWI_ ENSG00000030110|ENST00000374467|BAK1 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106506.4 NaN 21888 5342 27229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27233 106.37 NaN 46418 35 0 5938.1 0.264 + 19242 NKPHTLLY 8 32 493.2777055762293 NaN 0 493.30670166015625 PEAK HCD FTMS 0 0 0 27229 5823.3359375 0.314797315602905 2 -0.0256500244140625 4 Unmodified _NKPHTLLY_ REV__ENSG00000146918|ENST00000356309|NCAPG2;REV__ENST00000432615.5_1_7:158447451-158457424:-|nuORF;REV__ENST00000467785.5_1_7:158448006-158486027:-|nuORF;REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117902.3 NaN 21889 5342 27229 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27235 106.38 NaN 371630 35 0 56182 0.327 -1 0 59 580.8037565033469 1159.5929600734937 2 580.8042602539062 MULTI HCD FTMS 0 0 0 27234 87101.8046875 0.28755103249335684 11 -0.08641815185546875 1 NaN NaN 2 Y{I|L}EPE 5 -1 53.756 0 0 4.6357 0 0 510.28124242083743 0 510.28124242083743 0 11.182634244629597 0 0 0 1.2302046884880937 0 0.3494850021680094 0 Y{I|L}EPE 4.6357 - 164 NaN NaN 157352.3 NaN 21890 5343 27234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27236 106.38 NaN 148320 35 0 15352 0.261 + 26342 SSEMEQLDRP 10 40 596.2686356788599 1190.5227184245198 2 596.2685546875 MULTI HCD FTMS 0 0 0 27234 18169.208984375 0.15606704015960632 11 -0.08641815185546875 2 Unmodified _SSEMEQLDRP_ ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A 1.3295316138638542 0.46826628246186464 2 G 1 10 6.9897 0 0 0.58711 0 0 100.05378255269973 1030.4236117470327 1130.4773942997324 0 0 0 0 0 0 0 0 0 G 0.58711 - 5 + NaN NaN 114901.6 NaN 21891 5343 27234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27238 106.39 NaN 105940 35 0 14257 0.412 + 17540 LYVDSLFFL 9 42 558.8023048748913 1115.5900568165825 2 558.802734375 MULTI HCD FTMS 0 0 0 27237 48166.4453125 0.4608350336295762 10 -0.076812744140625 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 85.35673624503755 0.00464763827098139 2 [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 9 0 + 80.429 0 0 7.2095 7.2095 95.878 0 0 0 4.762036441594191 69.45940619637945 4.762036441594191 80.42850632646001 0 2.305462187404089 0 1.2302046884880937 0 + + [Y{I|L}]VDS{I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 7.2095 + + 196 NaN NaN 136614 NaN 21892 5344 27237 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27242 106.41 NaN 56116 35 0 4448.4 0.327 + 23517 RNHLGRKLRRR 11 46 487.974644966879 1460.902105500837 3 487.9747619628906 MULTI HCD FTMS 0 0 0 27241 25438.900390625 0.3381377806526676 -2 0.01349639892578125 1 Unmodified _RNHLGRKLRRR_ ENST00000530731.5_1_11:124495676-124501136:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1 0.09484139111097674 0.41850472438158626 2 {M(Oxidation (M))|F} 1 11 3.9794 0 0 0.27239 0 0 827.0138131197808 483.82346521549067 1310.8372783352715 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.27239 - 3 + NaN NaN 103238.7 NaN 21893 5347 27241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27243 106.41 NaN 55779 35 0 9161.2 0.261 + 15006 LLLLLLKRK 9 36 555.4104370263171 NaN 0 555.8170776367188 PEAK HCD FTMS 0 0 0 27241 34740.3984375 0.4459156306641697 6 -0.04825592041015625 2 Unmodified _LLLLLLKRK_ REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF 0 0.29524684227089293 2 {I|L} 1 -1 6.9897 0 0 0.63038 0 0 164.27136125790918 828.4348238580686 992.7061851159779 0 0 0 0 0 0 0 0 0 {I|L} 0.63038 + + 1 + NaN NaN 108430.4 NaN 21894 5347 27241 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27245 106.42 NaN 90668 35 0 7663.2 0.411 + 34775 YQPGDHLGVF 10 50 566.7755650153836 1131.536577097567 2 566.7743530273438 MULTI HCD FTMS 0 0 0 27244 5766.58251953125 0.24260988538504186 9 -0.0764312744140625 1 Unmodified _YQPGDHLGVF_ ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-2|NOS1;nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-5|NOS1 10.823927491677226 0.4098686510432541 2 SVSW 4 10 31.459 0 0 2.7802 0 0 654.3102284162125 0 654.3102284162125 0 15.083559388717372 0 0 0 0.8807196863200843 0 0 0 SVSW 2.7802 - 134 NaN NaN 129854.5 NaN 21895 5348 27244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27247 106.43 NaN 105020 35 0 28970 0.327 + 8167 GPPHNSNF 8 35 435.1989054053092 NaN 0 435.19842529296875 PEAK HCD FTMS 0 0 0 27246 23995.27734375 0.7634692811853105 20 -0.16887664794921875 1 Unmodified _GPPHNSNF_ ENSG00000104522|ENST00000425753|GFUS;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENST00000532308.5_1_8:144696774-144699659:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109830.9 NaN 21896 5349 27246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27248 106.43 NaN 99722 35 0 9748.5 0.261 -1 0 46 566.3096418081963 565.3023653415962 1 566.2975463867188 MULTI HCD FTMS 0 0 0 27246 14496.408203125 0.666269684354627 -4 0.03020477294921875 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 6 NaN NaN 109454.9 NaN 21897 5349 27246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27250 106.44 NaN 62917 35 0 5755.3 0.411 + 13655 KYPENFFLL 9 38 585.8134401307015 1169.6123273282028 2 586.315185546875 MULTI HCD FTMS 0 0 0 27249 10255.0107421875 0.21034921660767375 1 -0.007537841796875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 11.494710602746466 0.2610445893512368 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3657704084 0 778.3657704084 0 11.73393743112328 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 12 NaN NaN 102314.7 NaN 21898 5350 27249 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27252 106.44 NaN 268520 35 0 53151 0.411 + 6546 FPLDFIVQF 9 59 563.3026599453377 1124.5907669574754 2 563.3026733398438 MULTI HCD FTMS 0 0 0 27251 217098.796875 0.49817493084550446 -14 0.130462646484375 1 Unmodified _FPLDFIVQF_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 62.57269311338072 0.013982455292112035 2 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F} 9 3 + 67.802 0 0 6.029 6.029 89.414 0 0 0 4.762036441594191 63.197756518413684 4.762036441594191 9.515449934959719 0 2.274227503252014 0 0 0.4247425010840047 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{I|L}{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}V[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{I|L}{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F} 6.029;5.1829;4.8325;3.9864 -;-;-;- 124 NaN NaN 190017.7 NaN 21899 5351 27251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27254 106.45 NaN 1653300 35 0 298490 0.371 + 6199 FPELYPFLL 9 68 569.8128731066784 1137.6111932801566 2 569.81298828125 MULTI HCD FTMS 0 0 0 27253 729895.8125 0.2524959151658672 20 -0.17197418212890625 1 Unmodified _FPELYPFLL_ ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA 50.855029805455786 0.030374663808198754 2 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L} 9 2 + 63.65 0 0 5.5951 5.5951 88.564 0 0 0 3.65279269351241 47.08342832424712 3.65279269351241 9.230530548736056 0 1.7302046884880937 0 0.3494850021680094 0 {[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{I|L}EYP{M(Oxidation (M))|F}{I|L}{I|L};[Y{I|L}][EP]{M(Oxidation (M))|F}P{M(Oxidation (M))|F}{I|L}{I|L} 5.5951;4.7837 -;- 234 NaN NaN 529697.1 NaN 21900 5352 27253 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27256 106.46 NaN 515760 35 0 66164 0.412 + 9574 HRRPSPRRLPR 11 85 476.6237756780038 1426.8494976342115 3 476.9581298828125 MULTI HCD FTMS 0 0 0 27255 126495.40625 0.6142327354386996 1 -0.0074310302734375 1 Unmodified _HRRPSPRRLPR_ ENSG00000230778|ENST00000434396|ANKRD63 0.4545168274142398 0.41692731010159206 2 {M(Oxidation (M))|F} 1 11 10.485 0 0 0.7348 0 0 1261.7702872844052 0 1261.7702872844052 0 -5.088643834802156 -5.088643834802156 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.7348 - 24 + NaN NaN 250240.2 NaN 21901 5353 27255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27258 106.47 NaN 86999 35 0 6656.3 0.411 + -1 FPTPLVSCAGV 11 57 574.2937756253659 1146.5729983175318 2 574.7950439453125 MULTI HCD FTMS 0 0 0 27257 36057.25 0.9500486929679367 -9 0.069183349609375 1 Carbamidomethyl (C) _FPTPLVSC(Carbamidomethyl (C))AGV_ REV__ENST00000432854.5_1_7:44100999-44101362:+|nuORF 21.536976647645854 0.2694300281126922 2 DY[DV]D{I|L}PE 8 -1 48.053 0 0 4.191 0 0 182.141893455275 0 182.141893455275 0 27.083428324247123 0 0 0 0.6307196863200843 0 0.75 0 DY[DV]D{I|L}PE 4.191 - 62 NaN NaN 109611.1 NaN 21902 5354 27257 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27260 106.47 NaN 184610 35 0 25610 0.327 + -1 VRFCRLIL 8 33 538.8229728086134 1075.6313926840267 2 538.822998046875 MULTI HCD FTMS 0 0 0 27259 40166.36328125 0.7384722127861704 1 -0.01276397705078125 1 Carbamidomethyl (C) _VRFC(Carbamidomethyl (C))RLIL_ REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;REV__ENSG00000197653|ENST00000673944|DNAH10;REV__nc|ENSG00000197653|Q8IVF4|DNAH10 13.50788311687929 0.4944073034352369 2 {I|L}{I|L}{I|L} 3 -1 32.435 0 0 3.0154 0 0 718.3686882489692 0 718.3686882489692 0 31.95046257204389 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L} 3.0154 + + 8 NaN NaN 119879.3 NaN 21903 5355 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27261 106.48 NaN 64346 35 0 17459 0.261 + 15091 LMEKCYHRP 9 25 588.7861886377955 1175.5578243423909 2 588.7861328125 MULTI HCD FTMS 0 0 0 27259 19619.33203125 0.36149965797319755 33 -0.3191986083984375 2 Unmodified _LMEKCYHRP_ ENST00000250076.7_2_17:5015492-5015627:-|nuORF 3.2813086475875832 0.32614229037259 2 {I|L}ME 3 6 23.188 0 0 1.9725 0 0 0 799.3694552057249 799.3694552057249 23.187587626244124 0 0 0 0 0 0 0 0 + {I|L}ME 1.9725 + + 4 + NaN NaN 94181.3 NaN 21904 5355 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27262 106.48 NaN 94185 35 0 7477.8 0.261 + -1 VRRRCLSW 8 35 566.811762276765 1131.6089716203298 2 566.798828125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _VRRRC(Carbamidomethyl (C))LSW_ REV__sp|P0CK51|CEP3_EBVB9Cytoplasmicenvelopmentprotein3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBLF1PE=1SV=1 2.577480529830294 0.5381683276125971 2 MSW 3 -1 17.932 0 0 1.5846 0 0 709.4544744052893 0 709.4544744052893 0 12.447274948966939 0 0 0 0 0 0 0 MSW 1.5846 - 25 + NaN NaN 98500.1 NaN 21905 5355 27259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27264 106.49 NaN 381690 35 0 32878 0.327 + 21182 PPTRPRRRRRP 11 84 482.29927846794567 1443.876006004037 3 482.29931640625 MULTI HCD FTMS 0 0 0 27263 168590.015625 0.8938291370066631 2 -0.01667022705078125 1 Unmodified _PPTRPRRRRRP_ REV__ENSG00000140470|ENST00000268070|ADAMTS17 1.3296431237094175 0.4130893034510334 2 A 1 -1 6.2371 0 0 0.43197 0 0 765.4728303428423 604.3546846979124 1369.8275150407546 0 0 0 0 0 0.4247425010840047 0 0 0 A 0.43197 - 11 + NaN NaN 152219.5 NaN 21906 5356 27263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27265 106.49 NaN 32229 35 0 6110.3 0.261 + -1 LAEPEVDVLCV 11 23 622.3163052978891 NaN 0 622.3167724609375 PEAK HCD FTMS 0 0 0 27263 4304.8935546875 0.156765620583621 14 -0.1170654296875 2 Carbamidomethyl (C) _LAEPEVDVLC(Carbamidomethyl (C))V_ REV__ENSG00000161647|ENST00000398389|MPP3 8.745405648335112 0.31731194618894887 2 {I|L} 1 -1 16.99 0 0 1.3673 0 0 852.4285262678501 274.08258997135005 1126.5111162392002 0 0 0 0 0 1 0 0 0 {I|L} 1.3673 + + 4 + NaN NaN 117131.2 NaN 21907 5356 27263 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27268 106.5 NaN 134850 35 0 14566 0.327 + 6418 FPHPHVQWL 9 40 580.8037565033469 1159.5929600734937 2 580.8041381835938 MULTI HCD FTMS 0 0 0 27267 88297.0625 0.29149696242343387 26 -0.25052642822265625 1 Unmodified _FPHPHVQWL_ sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1 7.289230182591677 0.29575926068275815 2 Y{I|L}EPE 5 8 46.454 0 0 4.006 0 0 510.2808683060319 0 510.2808683060319 0 30 0 0 0 0.8494850021680094 0 0 0 Y{I|L}EPE 4.006 - 24 NaN NaN 113016.2 NaN 21908 5358 27267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27269 106.51 NaN 29086 35 0 4791.7 0.261 -1 QMVAYFILVC 10 24 622.3163052978891 NaN 0 622.31689453125 PEAK HCD FTMS 0 0 0 27267 4774.73388671875 0.17387517516154835 16 -0.14687347412109375 2 Carbamidomethyl (C) _QMVAYFILVC(Carbamidomethyl (C))_ ENST00000544665.7_1_16:31343862-31344042:+|nuORF 3.944395688203298 0.33680843299986807 2 {I|L} 1 -1 11.99 0 0 0.96487 0 0 852.4284041975376 274.08371912174067 1126.5121233192783 0 0 0 0 0 0.5 0 0 0 {I|L} 0.96487 + + 1 + NaN NaN 103568.3 NaN 21909 5358 27267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27271 106.51 NaN 87261 35 0 12067 0.327 + 17541 LYVDSLFFL 9 34 558.8023048748913 1115.5900568165825 2 558.802734375 MULTI HCD FTMS 0 0 0 27270 33804.9140625 0.323430317677901 24 -0.23377227783203125 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 20.453626601364224 0.18364154288633264 2 {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 4 5 37.423 0 0 3.3545 0 0 577.2744007794937 0 577.2744007794937 0 35.828956512079344 0 0 0 1 0 0 0 + {I|L}{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.3545 + + 33 NaN NaN 102982.8 NaN 21910 5359 27270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27272 106.52 NaN 38601 35 0 5693.1 0.261 -1 DYMNLLGMIF 10 35 624.7859406717657 NaN 0 624.7857666015625 PEAK HCD FTMS 0 0 0 27270 8797.3203125 0.4507004314657829 -5 0.04619598388671875 2 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 10.799506525563784 0.33094140821724455 2 {I|L} 1 -1 13.539 0 0 1.0853 0 0 652.2535086855252 479.19562708072505 1131.4491357662503 0 0 0 0 0 0.805462187404089 0 0 0 {I|L} 1.0853 + + 18 + NaN NaN 97320.5 NaN 21911 5359 27270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27273 106.52 NaN 38549 35 0 3130.3 0.261 + 24285 RYFLPPYTF 9 29 602.3135986328125 NaN 0 602.3135986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 3.5964929083625545 0.27781873954207675 2 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.3309 0 0 542.4001969708999 510.12305627994374 1052.5232532508435 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.3309 + + 1 + NaN NaN 106025.5 NaN 21912 5359 27270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27275 106.52 NaN 60516 35 0 5086.1 0.412 + 7626 FYILIGGLGL 10 44 533.320598866326 1064.626644799452 2 533.8231201171875 MULTI HCD FTMS 0 0 0 27274 28313.32421875 0.2857273113377538 -13 0.1146087646484375 1 Unmodified _FYILIGGLGL_ ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1 18.13498045792455 0.3414835283589826 2 {I|L}{I|L}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L} 6 6 12.893 0 0 1.211 0 0 310.1319752423844 0 310.1319752423844 0 9.397737521010827 0 0 0 0.9247425010840047 0 0 0 {I|L}{I|L}{I|L}{[{M(Oxidation (M))|F}H]|[RQ]}{I|L} 1.211 - 21 NaN NaN 100264.4 NaN 21913 5360 27274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27277 106.53 NaN 79238 35 0 3751.2 0.411 + 30460 VLRRLVLWFFL 11 75 487.974644966879 1460.902105500837 3 487.9743347167969 MULTI HCD FTMS 0 0 0 27276 22826.060546875 0.30340751116774584 12 -0.098052978515625 1 Unmodified _VLRRLVLWFFL_ REV__ENSG00000075790|ENST00000005259|BCAP29;REV__nc|ENSG00000075790|Q9UHQ4-2|BCAP29 0.09484139111097674 0.41850472438158626 2 A 1 -1 10.242 0 0 0.70109 0 0 193.13577155245986 1193.722078547808 1386.8578501002678 0 0 0 0 0 0.3252574989159953 0 0 0 A 0.70109 - 10 + NaN NaN 121553.9 NaN 21914 5361 27276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27282 106.56 NaN 123910 35 0 17344 0.327 + 7706 FYLLLGNLL 9 43 533.320598866326 1064.626644799452 2 533.8222045898438 MULTI HCD FTMS 0 0 0 27281 88250.734375 0.8905928834683574 -9 0.0739898681640625 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 34.10243960390752 0.09241788333544565 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 45.353 0 0 4.26 4.26 85.906 0 0 0 2.243012119929091 39.86880000633434 2.243012119929091 9.208187539523749 0 1.25 0 0 0 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GGG{I|L}{I|L} 4.26;3.3951 +;- + 48 NaN NaN 121903.7 NaN 21915 5365 27281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27283 106.56 NaN 65737 35 0 5979.9 0.261 + 13656 KYPENFFLL 9 34 585.8134401307015 1169.6123273282028 2 585.8139038085938 MULTI HCD FTMS 0 0 0 27281 30341.71875 0.6732276083747564 11 -0.1231842041015625 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 24.464 0 0 2.0916 0 0 925.4333461967148 0 925.4333461967148 0 5 0 0 0 0.3494850021680094 0 0 0 + {I|L}{I|L} 2.0916 + + 8 NaN NaN 100876.5 NaN 21916 5365 27281 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27285 106.57 NaN 392130 35 0 65544 0.327 + 11438 IYPYLLPFI 9 41 569.8308989962514 1137.6472450593028 2 569.8131103515625 MULTI HCD FTMS 0 0 0 27284 20170.470703125 0.06351715087392104 -8 0.06656646728515625 1 Unmodified _IYPYLLPFI_ ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-2|LTN1;nc|ENSG00000198862|O94822-3|LTN1 28.173230860318316 0.11963627304438548 2 [Y{I|L}]V{I|L}Y 5 6 37.095 0 0 3.2607 0 0 0 483.2658113036966 483.2658113036966 30.105538296906147 0 0 0 0 1.3494850021680094 1.154901959985743 0 0 [Y{I|L}]V{I|L}Y 3.2607 - 113 NaN NaN 147507.7 NaN 21917 5366 27284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27286 106.57 NaN 714030 35 0 150190 0.261 + 6547 FPLDFIVQF 9 47 563.3026599453377 1124.5907669574754 2 563.3027954101562 MULTI HCD FTMS 0 0 0 27284 89268.5703125 0.20484389818020146 1 -0.00939178466796875 2 Unmodified _FPLDFIVQF_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 92.4914307365334 0.004460681868130716 2 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F} 9 3 + 77.731 0 0 6.9119 6.9119 91.538 0 0 0 5.7306842758112 53.92036532176853 5.7306842758112 11.989700043360187 0 2.3807196863200843 0 0.7614393726401688 0.4247425010840047 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{I|L}{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}V[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V{I|L}P{M(Oxidation (M))|F}VQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{I|L}{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V{I|L}P{M(Oxidation (M))|F}V[AG]{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{I|L}{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]V{I|L}P{I|L}{[C(Carbamidomethyl (C))T]|[{M(Oxidation (M))|F}N]}{M(Oxidation (M))|F} 6.9119;5.8458;5.7154;5.6485;4.6493;4.452;2.9507;2.7534 -;-;-;-;-;-;-;- 210 NaN NaN 202074.5 NaN 21918 5366 27284 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27288 106.58 NaN 357990 35 0 80899 0.411 -1 0 88 476.6237756780038 1426.8494976342115 3 476.6236572265625 MULTI HCD FTMS 0 0 0 27287 148796.40625 0.5209942810261743 11 -0.124114990234375 1 NaN NaN 2 P 1 -1 3.9794 0 0 0.27889 0 0 748.4462491710614 578.3229464166624 1326.7691955877237 0 0 0 0 0 0 0 0 0 P 0.27889 - 14 + NaN NaN 195372.3 NaN 21919 5367 27287 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27290 106.59 NaN 47114 35 0 6248.1 0.327 + 22100 QICRFLTVLS 10 25 590.3323364257812 NaN 0 590.3323364257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _QICRFLTVLS_ REV__ENSG00000102524|ENST00000375887|TNFSF13B;REV__nc|ENSG00000102524|Q9Y275-2|TNFSF13B 3.2813086475875832 0.33737594360511275 2 {M(Oxidation (M))|F} 1 -1 8.4949 0 0 0.72073 0 0 531.3167361237895 497.2399996393188 1028.5567357631082 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.72073 + + 1 + NaN NaN 97761.7 NaN 21920 5368 27289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27291 106.59 NaN 27340 35 0 4935.6 0.262 + 2070 DENWPWWLP 9 26 621.7813720703125 NaN 0 621.7813720703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DENWPWWLP_ ENST00000454201.5_1_3:50363554-50364527:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94430 NaN 21921 5368 27289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27293 106.6 NaN 103380 35 0 8215.6 0.411 + 27408 SYTRYGLSW 9 47 566.7743335776964 NaN 0 566.7741088867188 PEAK HCD FTMS 0 0 0 27292 19728.095703125 0.7466429917921483 3 -0.0276336669921875 1 Unmodified _SYTRYGLSW_ REV__SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant 9.38312468134398 0.24977752951804 2 SV 2 -1 18.711 0 0 1.6536 0 0 204.0903269420334 738.3187349908811 942.4090619329145 0 0 0 0 0 0.9247425010840047 0 0 0 SV 1.6536 - 33 + NaN NaN 125961.4 NaN 21922 5369 27292 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27295 106.6 NaN 73128 35 0 28569 0.411 + 33661 YKFQSRRKR 9 36 634.8695068359375 NaN 0 634.8695068359375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YKFQSRRKR_ ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111663.6 NaN 21923 5370 27294 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27297 106.61 NaN 190720 35 0 16426 0.327 + 23984 RVRQRRHARLP 11 70 482.29927846794567 1443.876006004037 3 482.6337585449219 MULTI HCD FTMS 0 0 0 27296 36628.98828125 0.2178464110273295 17 -0.18187713623046875 1 Unmodified _RVRQRRHARLP_ REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF 1.3296431237094175 0.4130893034510334 2 A 1 -1 2.2185 0 0 0.15365 0 0 589.3699768065745 780.4587496393186 1369.8287264458932 0 0 0 0 0 0 0 0 0 A 0.15365 + + 17 + NaN NaN 132879.7 NaN 21924 5371 27296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27298 106.61 NaN 112750 35 0 16803 0.261 + 6652 FPLYTPLIL 9 34 538.8229728086134 1075.6313926840267 2 539.3248901367188 MULTI HCD FTMS 0 0 0 27296 4991.23876953125 0.1294510419952947 5 -0.0726165771484375 2 Unmodified _FPLYTPLIL_ REV__ENST00000232496.4_1_3:50362844-50363069:-|nuORF 15.847184025352803 0.2234401846867398 2 {I|L}{I|L}{I|L} 3 -1 31.198 0 0 2.9004 0 0 718.3690161092992 0 718.3690161092992 0 31.197887582883936 0 0 0 0.5 0 0 0 {I|L}{I|L}{I|L} 2.9004 + + 8 NaN NaN 102662.8 NaN 21925 5371 27296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27299 106.62 NaN 20726 35 0 3875.8 0.261 -1 SDHGMTQCSEE 11 20 648.7268676757812 NaN 0 648.7268676757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _SDHGM(Oxidation (M))TQC(Carbamidomethyl (C))SEE_ ENSG00000112796|ENST00000371383|ENPP5 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91166.2 NaN 21926 5371 27296 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27302 106.63 NaN 135160 35 0 25562 0.327 + 29784 VEFAPVLLL 9 31 500.8075944233439 999.6006359134878 2 500.8075866699219 MULTI HCD FTMS 0 0 0 27301 44443.15625 0.04683115591782554 -28 0.23394775390625 1 Unmodified _VEFAPVLLL_ ENSG00000105695|ENST00000392213|MAG;nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG 21.74664581756881 0.17247014374749275 2 V{I|L}{I|L}{I|L} 4 5 46.938 0 0 4.6957 0 0 543.2679310529312 0 543.2679310529312 0 46.938200260161125 0 0 0 1.5 0 0 0 + V{I|L}{I|L}{I|L} 4.6957 + + 15 NaN NaN 116917.6 NaN 21927 5373 27301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27303 106.63 NaN 250230 35 0 48949 0.261 + 6419 FPHPHVQWL 9 45 580.8037565033469 1159.5929600734937 2 580.822265625 MULTI HCD FTMS 0 0 0 27301 11666.5400390625 0.03851499570982996 41 -0.41351318359375 2 Unmodified _FPHPHVQWL_ sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1 7.289230182591677 0.29575926068275815 2 {I|L}Y{I|L}PEE 6 8 44.954 0 0 3.8767 0 0 397.19697768379064 0 397.19697768379064 0 21.052659518797938 0 0 0 0.3807196863200844 0 0.3494850021680094 0 {I|L}Y{I|L}PEE 3.8767 - 75 NaN NaN 132424.4 NaN 21928 5373 27301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27304 106.64 NaN 47824 35 0 6476.5 0.261 + 15072 LLYIIFLHDH 10 22 642.3613891601562 NaN 0 642.3613891601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LLYIIFLHDH_ REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96902.2 NaN 21929 5373 27301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27305 106.64 NaN 23363 35 0 6471.6 0.261 + -1 YLVYERYC 8 20 583.2732543945312 NaN 0 583.2732543945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Carbamidomethyl (C) _YLVYERYC(Carbamidomethyl (C))_ REV__ENST00000413422.4_1_19:44086050-44086092:+|nuORF 0.7936320650641473 0.38822285293237185 2 C 1 -1 3.9794 0 0 0.34201 0 0 496.52565771308747 560.9797457330686 1057.5054034461562 0 0 0 0 0 0 0 0 0 C 0.34201 + + 1 + NaN NaN 103647 NaN 21930 5373 27301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27306 106.64 NaN 37686 35 0 5587.4 0.261 + -1 HDMMCSTEVS 10 27 607.2101161542025 NaN 0 606.7993774414062 PEAK HCD FTMS 0 0 0 27301 16595.625 1 0 0 5 Acetyl (Protein N-term),2 Oxidation (M) _(Acetyl (Protein N-term))HDM(Oxidation (M))M(Oxidation (M))CSTEVS_ REV__ENST00000316610.6_1_5:89757234-89757291:-|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91996.7 NaN 21931 5373 27301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27308 106.65 NaN 151230 35 0 18022 0.411 + 6420 FPHPHVQWL 9 55 580.8037565033469 1159.5929600734937 2 581.32421875 MULTI HCD FTMS 0 0 0 27307 32318.556640625 0.15371877893763666 39 -0.387786865234375 1 Unmodified _FPHPHVQWL_ sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1 11.640296217721598 0.25978676193971967 2 {I|L}ME{I|L}Y{I|L} 6 8 53.167 0 0 4.585 0 0 0 394.1738304153689 394.1738304153689 24.6669877129645 0 0 0 0 0.6307196863200843 1.6989700043360187 0 0 {I|L}ME{I|L}Y{I|L} 4.585 - 74 + NaN NaN 153807.7 NaN 21932 5374 27307 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27310 106.66 NaN 109360 35 0 18649 0.327 + 23985 RVRQRRHARLP 11 49 482.29927846794567 1443.876006004037 3 482.29852294921875 MULTI HCD FTMS 0 0 0 27309 32600.55078125 0.17284132789667736 21 -0.22464752197265625 1 Unmodified _RVRQRRHARLP_ REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF 0.4545168274142398 0.41692731010159206 2 M 1 -1 2.4743 0 0 0.17136 0 0 832.0089538573558 477.7901761835145 1309.7991300408703 0 0 0 0 0 0 0 0 0 M 0.17136 - 3 + NaN NaN 102451.3 NaN 21933 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27311 106.66 NaN 104920 35 0 26921 0.261 -1 KKCHQCVETI 10 31 434.88222977264707 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 27309 59880.3359375 0.683117450972598 28 -0.28516387939453125 2 2 Carbamidomethyl (C) _KKC(Carbamidomethyl (C))HQC(Carbamidomethyl (C))VETI_ ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 0.6976657623105312 0.3395871838311286 2 G 1 -1 1.5938 0 0 0.18367 0 0 634.6242485083817 173.0810488336547 807.7052973420364 0 0 0 0 0 0 0 0 0 G 0.18367 - 1 + NaN NaN 102629.5 NaN 21934 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27312 106.66 NaN 52903 35 0 5075.5 0.261 + 15131 LMLFWFFI 8 28 558.8022871774409 1115.5900214216817 2 558.802978515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 17.086550045450526 0.4680768486079041 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 -1 36.198 0 0 3.2447 0 0 690.3580189435562 0 690.3580189435562 0 36.197887582883936 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3.2447 + + 12 NaN NaN 102135.7 NaN 21935 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27313 106.67 NaN 323740 35 0 68463 0.261 + 6421 FPHPHVQWL 9 51 580.8037565033469 1159.5929600734937 2 580.80419921875 MULTI HCD FTMS 0 0 0 27309 22826.890625 0.07535889745776604 43 -0.427642822265625 4 Unmodified _FPHPHVQWL_ sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1 7.289230182591677 0.29575926068275815 2 {I|L}Y{I|L}EPE 6 9 37.484 0 0 3.2325 0 0 397.1978932111344 0 397.1978932111344 0 14.552593986562812 0 0 0 0.7614393726401688 0 0 0 {I|L}Y{I|L}EPE 3.2325 - 120 NaN NaN 147097.6 NaN 21936 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27314 106.67 NaN 38297 35 0 6681.2 0.261 -1 MPVFTAISEH 10 26 574.2781659410805 NaN 0 574.293701171875 PEAK HCD FTMS 0 0 0 27309 4789.5615234375 0.3382589575660969 1 -0.025909423828125 5 Oxidation (M) _M(Oxidation (M))PVFTAISEH_ MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|32|3|sense 3.2813086475875832 0.33737594360511275 2 P 1 -1 6.9897 0 0 0.60963 0 0 147.03989528550636 899.4233492486936 1046.4632445342 0 0 0 0 0 0 0 0 0 P 0.60963 + + 1 + NaN NaN 100659.7 NaN 21937 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27315 106.67 NaN 36278 35 0 5790.7 0.261 + 20107 NYIPRFWTF 9 24 622.316455901677 1242.618358870154 2 622.3169555664062 MULTI HCD FTMS 0 0 0 27309 7061.4287109375 0.11695627332687043 -69 0.6144790649414062 6 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 3.2813086475875832 0.32614229037259 2 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 3 7 15.458 0 0 1.244 0 0 852.4238114464557 0 852.4238114464557 0 15.45757490560675 0 0 0 0.5 0 0 0 {I|L}{[C(Carbamidomethyl (C))V]|[MQ]|[RC]|[MK]} 1.244 - 2 NaN NaN 101761.4 NaN 21938 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27316 106.68 NaN 36821 35 0 3482.1 0.261 -1 DYMNLLGMIF 10 31 624.7838745117188 NaN 0 624.7838745117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ ENSG00000105583|ENST00000596731|WDR83OS 8.155526934196011 0.33320428830121973 2 {I|L} 1 -1 14.604 0 0 1.1706 0 0 482.2178111310562 649.2297457330686 1131.4475568641249 0 0 0 0 0 0.7614393726401688 0 0 0 {I|L} 1.1706 + + 3 + NaN NaN 108008.6 NaN 21939 5375 27309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27319 106.69 NaN 269890 35 0 56070 0.327 + 7707 FYLLLGNLL 9 57 533.320598866326 1064.626644799452 2 533.3208618164062 MULTI HCD FTMS 0 0 0 27318 82976.40625 0.4188007300497917 3 -0.0275421142578125 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 93.88341677533236 0.004424206486747196 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 66.436 0 0 6.2403 6.2403 91.51 0 0 0 5.6424927368725974 57.85289777551107 5.6424927368725974 17.26280941356464 0 1.6989700043360187 0 0 0.805462187404089 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GGG{I|L}{I|L} 6.2403;4.6189 +;- + 136 NaN NaN 154807.8 NaN 21940 5377 27318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27320 106.69 NaN 65919 35 0 7684.7 0.261 + 13657 KYPENFFLL 9 23 585.8132717195124 1169.6119905058247 2 585.8136596679688 MULTI HCD FTMS 0 0 0 27318 45515.95703125 0.3897451415839579 -57 0.529998779296875 2 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.745405648335112 0.2847203663274469 2 {I|L}{I|L} 2 7 25.217 0 0 2.156 0 0 925.4307592786301 0 925.4307592786301 0 23.957465275951613 0 0 0 0.4247425010840047 0 0 0 + {I|L}{I|L} 2.156 + + 7 NaN NaN 107669.3 NaN 21941 5377 27318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27321 106.7 NaN 76294 35 0 10217 0.262 -1 AHVPTTCSL 9 35 493.2409791937086 NaN 0 493.240966796875 PEAK HCD FTMS 0 0 0 27318 10444.736328125 0.41985115188686317 68 -0.663055419921875 3 Carbamidomethyl (C) _AHVPTTC(Carbamidomethyl (C))SL_ ENST00000391834.6_1_19:50372434-50372704:-|nuORF 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97718.1 NaN 21942 5377 27318 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27323 106.7 NaN 363530 35 0 72753 0.411 + 6548 FPLDFIVQF 9 64 563.3026599453377 1124.5907669574754 2 563.3027954101562 MULTI HCD FTMS 0 0 0 27322 253374.765625 0.5814171158945087 13 -0.11664581298828125 1 Unmodified _FPLDFIVQF_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 81.89019881105858 0.005240739447516426 2 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F} 9 3 + 76.609 0 0 6.8122 6.8122 91.791 0 0 0 12.064083326475128 72.00495338161453 12.064083326475128 13.455612550363796 0 2.4247425010840047 0 0.7302046884880937 0.4247425010840047 [{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}VQ{M(Oxidation (M))|F};[{M(Oxidation (M))|F}E]VP{M(Oxidation (M))|F}{I|L}V[AG]{M(Oxidation (M))|F} 6.8122;5.6157 -;- 81 NaN NaN 198513.9 NaN 21943 5378 27322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27325 106.71 NaN 92190 35 0 8982.2 0.411 + 6973 FPVRYKGR 8 52 511.7984568814445 1021.582360829689 2 511.79840087890625 MULTI HCD FTMS 0 0 0 27324 31610.75390625 0.14910195600998755 -22 0.21474456787109375 1 Unmodified _FPVRYKGR_ REV__ENSG00000007047|ENST00000262891|MARK4;REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF;REV__nc|ENSG00000007047|Q96L34-2|MARK4 9.347437153973935 0.5250182646323369 2 VA{I|L}DPE 6 -1 34.334 0 0 3.3609 0 0 379.24470717597814 0 379.24470717597814 0 16.375175252488248 0 0 0 0.8494850021680094 0 0 0 VA{I|L}DPE 3.3609 - 53 NaN NaN 118821.6 NaN 21944 5379 27324 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27327 106.72 NaN 44296 35 0 5200.8 0.327 + 25217 SAPRPASHPVW 11 25 602.8128051757812 NaN 0 602.8128051757812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SAPRPASHPVW_ SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|24|3|sense 1.1933415558491238 0.338734977139133 2 T 1 11 6.9897 0 0 0.58121 0 0 165.08178368672617 933.4621065729124 1098.5438902596386 0 0 0 0 0 0 0 0 0 T 0.58121 - 1 + NaN NaN 116571.6 NaN 21945 5380 27326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27328 106.72 NaN 34520 35 0 4042.1 0.261 -1 GIHTLTCALML 11 25 623.3198006033858 NaN 0 623.3206176757812 PEAK HCD FTMS 0 0 0 27326 6395.4384765625 0.4848032627931633 1 -0.01271820068359375 2 Carbamidomethyl (C),Oxidation (M) _GIHTLTC(Carbamidomethyl (C))ALM(Oxidation (M))L_ ENSG00000146005|ENST00000274710|PSD2 5.296884461304476 0.3270944076746277 2 {I|L} 1 -1 6.9897 0 0 0.56159 0 0 854.4341365974826 274.0831392877563 1128.5172758852389 0 0 0 0 0 0 0 0 0 {I|L} 0.56159 + + 4 + NaN NaN 88851.5 NaN 21946 5380 27326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27329 106.73 NaN 104430 35 0 39439 0.261 + 10229 IHRQRRFQK 9 31 634.8781127929688 NaN 0 634.8781127929688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _IHRQRRFQK_ ENST00000446425.2_1_2:24199858-24205795:+|nuORF;ENST00000479859.1_1_2:24199858-24199963:+|nuORF 0.5247636613948944 0.2927039108006614 2 A 1 9 1.5938 0 0 0.12572 0 0 1023.8021767072281 169.87810693912346 1193.6802836463517 0 0 0 0 0 0 0 0 0 A 0.12572 - 1 + NaN NaN 128325.1 NaN 21947 5380 27326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27331 106.73 NaN 119910 35 0 11358 0.411 + 13843 KYPSPFFVF 9 60 566.2975113229083 1130.5804697126166 2 566.2976684570312 MULTI HCD FTMS 0 0 0 27330 24619.5390625 0.26813667997663837 -53 0.494659423828125 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 26.268140514670165 0.13340543277302316 2 [YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 3 + 31.417 0 0 2.7788 2.7788 80.197 0 0 0 0.4575749056067515 7.476884018817248 0.4575749056067515 0.4575749056067515 0 1.305462187404089 0 0 0 [YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YK][PS]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.7788;2.7384;2.6936 -;-;+ + 64 NaN NaN 120415 NaN 21948 5381 27330 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27333 106.74 NaN 45407 35 0 4960.5 0.411 + 24286 RYFLPPYTF 9 39 602.3142200736409 NaN 0 602.3154296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.22786006501039813 2 T 1 8 11.99 0 0 0.99697 0 0 165.08121387841726 933.463195101091 1098.5444089795083 0 0 0 0 0 0.5 0 0 0 + T 0.99697 + + 2 + NaN NaN 107195.4 NaN 21949 5382 27332 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27335 106.75 NaN 114490 35 0 9120.1 0.411 -1 MLLNQPQSW 9 61 566.7749878571608 NaN 0 566.775390625 PEAK HCD FTMS 0 0 0 27334 23822.748046875 0.6093976842657474 -5 0.0429534912109375 1 Oxidation (M) _M(Oxidation (M))LLNQPQSW_ nc|ENSG00000291164|Q6ZMU1|C3P1 10.073929032068715 0.24642998803896465 2 SW 2 -1 14.776 0 0 1.3059 0 0 204.0909809380858 651.2913912408811 855.382372178967 0 0 0 0 0 0.8807196863200843 0 0 0 SW 1.3059 + + 27 + NaN NaN 127562.7 NaN 21950 5383 27334 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27337 106.75 NaN 578340 35 0 122180 0.412 + 20507 PDIFAVIII 9 45 500.8075944233439 999.6006359134878 2 500.80755615234375 MULTI HCD FTMS 0 0 0 27336 376365.65625 0.39658836628999494 -17 0.17456817626953125 1 Unmodified _PDIFAVIII_ ENSG00000139514|ENST00000380752|SLC7A1 28.486842064014134 0.11819662193267319 2 RV{I|L}{I|L}{I|L} 5 5 51.454 0 0 5.1474 0 0 387.17894179511876 0 387.17894179511876 0 46.84955642535897 0 0 0 1.5 0 0 0 RV{I|L}{I|L}{I|L} 5.1474 - 22 NaN NaN 266624.6 NaN 21951 5384 27336 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27339 106.76 NaN 176960 35 0 47685 0.327 + 33765 YLFLIPHEE 9 35 580.8034458275836 NaN 0 580.8212280273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YLFLIPHEE_ REV__ENSG00000173597|ENST00000310613|SULT1B1 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 126951.1 NaN 21952 5385 27338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27340 106.76 NaN 35236 35 0 5426.4 0.261 + -1 RGHIIRMQKL 10 25 634.3770751953125 NaN 0 634.3770751953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _RGHIIRM(Oxidation (M))QKL_ REV__ENSG00000146535|ENST00000275364|GNA12 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96519.1 NaN 21953 5385 27338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27341 106.77 NaN 51845 35 0 8943.9 0.261 + 10345 ILPVSVESSHL 11 28 590.8331298828125 NaN 0 590.8331298828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ILPVSVESSHL_ ENSG00000149308|ENST00000278612|NPAT;ENST00000610253.5_1_11:108042863-108061204:-|nuORF 1.1933415558491238 0.338734977139133 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100682.9 NaN 21954 5385 27338 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27343 106.77 NaN 34615 35 0 6343.7 0.327 + 20108 NYIPRFWTF 9 20 622.316455901677 1242.618358870154 2 622.3143310546875 MULTI HCD FTMS 0 0 0 27342 17760.712890625 0.29416522864538397 -60 0.5578536987304688 1 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 9.38312468134398 0.279288223203164 2 [YN]{I|L} 3 6 39.705 0 0 3.1953 0 0 0 849.4044712851525 849.4044712851525 39.704999916446795 0 0 0 0 0.9247425010840047 2 0 0 + [YN]{I|L} 3.1953 + + 7 + NaN NaN 95938.3 NaN 21955 5386 27342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27344 106.78 NaN 51403 35 0 5720.1 0.261 + 2713 DVLENPSKKRP 11 30 641.8592529296875 NaN 0 641.8592529296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DVLENPSKKRP_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 4.897010918128616 0.3282287337590871 2 K 1 -1 0.48455 0 0 0.037805 0 0 671.3769119123061 479.2131746881469 1150.590086600453 0 0 0 0 0 0 0 0 0 K 0.037805 + + 1 + NaN NaN 114738.6 NaN 21956 5386 27342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27346 106.78 NaN 137150 35 0 33659 0.327 -1 RCLPRSMRMH 10 43 434.88222977264707 NaN 0 434.88232421875 PEAK HCD FTMS 0 0 0 27345 74229.9140625 0.8468180561514574 40 -0.38440704345703125 1 Oxidation (M) _RCLPRSM(Oxidation (M))RMH_ ENST00000555690.5_1_14:94640802-94696957:+|nuORF 0.6976657623105312 0.3395871838311286 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 134267.8 NaN 21957 5387 27345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27347 106.79 NaN 71676 35 0 9214.3 0.261 -1 GLMMEEMI 8 32 493.2043631886067 NaN 0 492.785888671875 PEAK HCD FTMS 0 0 0 27345 3953.321533203125 0.3390920482763329 2 -0.016876220703125 2 2 Oxidation (M) _GLM(Oxidation (M))MEEM(Oxidation (M))I_ ENSG00000064655|ENST00000327619|EYA2;nc|ENSG00000064655|O00167-2|EYA2;nc|ENSG00000064655|O00167-3|EYA2 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106313.4 NaN 21958 5387 27345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27349 106.79 NaN 65108 35 0 6051.4 0.411 + 17542 LYVDSLFFL 9 53 558.8025648550963 NaN 0 558.8023681640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 48.345845343767074 0.05150985380647864 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}S 4 7 33.448 0 0 2.9983 0 0 131.09710923504934 487.2191256158813 618.3162348509306 0 0 0 0 0 1.305462187404089 0 0.7742275032520141 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}S 2.9983 - 32 + NaN NaN 111824.5 NaN 21959 5388 27348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27352 106.81 NaN 430280 35 0 102850 0.327 + -1 HLNRQLMIF 9 45 594.3212484657572 1186.6279439983143 2 594.3214111328125 MULTI HCD FTMS 0 0 0 27351 58819.80859375 0.0330499353551949 -11 0.096527099609375 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 28.486842064014134 0.11819662193267319 2 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6 -1 79.245 0 0 6.6782 0 0 439.20970351386876 0 439.20970351386876 0 53.83925646871916 0 0 0 2.305462187404089 0 0 1.6549471895720984 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.6782 - 101 NaN NaN 154611.2 NaN 21960 5390 27351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27353 106.81 NaN 51515 35 0 7708.4 0.261 -1 0 20 605.3120769682333 1208.6096010032666 2 605.3131103515625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 6 -1 36.923 0 0 3.055 0 0 0 426.16325093376497 426.16325093376497 15.954387282529794 0 0 0 0 0.4247425010840047 2 0 0 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3.055 - 8 + NaN NaN 101334.8 NaN 21961 5390 27351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27354 106.81 NaN 70530 35 0 7709.4 0.261 + -1 VRCKFFFL 8 38 558.8025648550963 NaN 0 558.8256225585938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _VRC(Carbamidomethyl (C))KFFFL_ REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF 18.13498045792455 0.38579626240450227 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}C 4 -1 24.157 0 0 2.1654 0 0 131.09492817762322 437.2768953912719 568.3718235688951 0 0 0 0 0 1 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{M(Oxidation (M))|F}C 2.1654 - 17 + NaN NaN 100884.2 NaN 21962 5390 27351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27356 106.82 NaN 161630 35 0 26210 0.411 + 7708 FYLLLGNLL 9 56 533.320598866326 1064.626644799452 2 533.3211059570312 MULTI HCD FTMS 0 0 0 27355 51007.43359375 0.2574460788608662 17 -0.16544342041015625 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 60.38955033654506 0.017036522530421875 2 [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L} 9 0 + 60.64 0 0 5.6959 5.6959 89.927 0 0 0 4.762036441594191 46.660546934575464 4.762036441594191 13.455612550363796 0 1.6549471895720984 0 0 0.4247425010840047 + + [Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GN{I|L}{I|L};[Y{M(Oxidation (M))|F}]{I|L}{I|L}{I|L}GGG{I|L}{I|L};[NG]{I|L}{I|L}{I|L}[Y{M(Oxidation (M))|F}]{I|L}{I|L};[KA][TP]{I|L}[Y{M(Oxidation (M))|F}]{I|L}{I|L} 5.6959;4.432;2.9912;1.3473 +;-;-;- + 160 NaN NaN 137169.3 NaN 21963 5391 27355 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27358 106.83 NaN 213010 35 0 40203 0.327 + 6549 FPLDFIVQF 9 39 563.3026599453377 1124.5907669574754 2 563.3026733398438 MULTI HCD FTMS 0 0 0 27357 73241.65625 0.16806706238156788 27 -0.2674713134765625 1 Unmodified _FPLDFIVQF_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 36.12702656103203 0.08312389501731911 2 {I|L}VQ{M(Oxidation (M))|F} 4 5 54.993 0 0 4.89 0 0 619.2993031232437 0 619.2993031232437 0 54.992822134202015 0 0 0 1.8807196863200843 0 0 0.4247425010840047 + {I|L}VQ{M(Oxidation (M))|F} 4.89 + + 41 NaN NaN 120158.8 NaN 21964 5392 27357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27359 106.83 NaN 53631 35 0 6884 0.261 -1 0 25 605.3120769682333 1208.6096010032666 2 605.8145751953125 MULTI HCD FTMS 0 0 0 27357 19607.171875 0.12180916348568276 -9 0.08144378662109375 2 NaN NaN 2 YY{I|L} 3 -1 34.705 0 0 2.8715 0 0 0 766.3739107721311 766.3739107721311 13.735899786366232 0 0 0 0 0.4247425010840047 2 0 0 YY{I|L} 2.8715 - 4 + NaN NaN 110199.9 NaN 21965 5392 27357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27360 106.83 NaN 131730 35 0 25778 0.261 + 17647 LYYPLLLEH 9 36 580.8224487304688 NaN 0 580.8224487304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _LYYPLLLEH_ ENSG00000161992|ENST00000409413|PRR35 11.640296217721598 0.23883959125015683 2 G 1 9 3.9794 0 0 0.34466 0 0 853.4677350568373 241.09803186588127 1094.5657669227187 0 0 0 0 0 0 0 0 0 G 0.34466 - 3 + NaN NaN 110853.7 NaN 21966 5392 27357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27361 106.84 NaN 58042 35 0 8983.4 0.261 -1 LLVREVSPG 9 31 506.2959013131267 NaN 0 506.29608154296875 PEAK HCD FTMS 0 0 0 27357 5123.29150390625 0.35453277501029556 8 -0.08496856689453125 4 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLVREVSPG_ ENST00000463679.5_1_11:62458511-62458664:-|nuORF 0.5247636613948944 0.2927039108006614 2 M 1 -1 3.0989 0 0 0.30665 0 0 374.62865457762217 501.8693941705688 876.498048748191 0 0 0 0 0 0 0 0 0 M 0.30665 - 1 + NaN NaN 115223.9 NaN 21967 5392 27357 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27363 106.84 NaN 95950 35 0 11185 0.327 + 6974 FPVRYKGR 8 35 511.7984568814445 1021.582360829689 2 511.7987976074219 MULTI HCD FTMS 0 0 0 27362 87174.6953125 0.41118657353814414 -8 0.0823822021484375 1 Unmodified _FPVRYKGR_ REV__ENSG00000007047|ENST00000262891|MARK4;REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF;REV__nc|ENSG00000007047|Q96L34-2|MARK4 9.347437153973935 0.5250182646323369 2 DPE 3 -1 30.005 0 0 2.9371 0 0 662.43266493965 0 662.43266493965 0 7.04628427264403 0 0 0 0.3807196863200844 0 0 0 DPE 2.9371 - 6 NaN NaN 105209 NaN 21968 5393 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27364 106.85 NaN 74992 35 0 9905.2 0.261 + 5397 FGTILYTGDF 10 23 567.2777651959742 NaN 0 567.2784423828125 PEAK HCD FTMS 0 0 0 27362 30669.77734375 0.6732255772905448 -44 0.41637420654296875 2 Unmodified _FGTILYTGDF_ ENSG00000118655|ENST00000650450|DCLRE1B 3.944395688203298 0.33680843299986807 2 S 1 10 6.9897 0 0 0.61717 0 0 841.4200495796453 201.06606470279533 1042.4861142824407 0 0 0 0 0 0 0 0 0 S 0.61717 - 4 + NaN NaN 102892.1 NaN 21969 5393 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27365 106.85 NaN 60283 35 0 7209.8 0.261 + 24273 RYFLPPYTF 9 30 602.3132366466748 1202.6119203601495 2 602.8148803710938 MULTI HCD FTMS 0 0 0 27362 10672.8955078125 0.5315771272482133 -1 0.01598358154296875 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.2057823575117 0.30397260197431997 2 V{M(Oxidation (M))|F} 2 8 19.464 0 0 1.6185 0 0 938.458787986525 0 938.458787986525 0 19.463950151760656 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.6185 - 3 NaN NaN 107584.4 NaN 21970 5393 27362 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27367 106.86 NaN 88272 35 0 15850 0.327 + 13658 KYPENFFLL 9 31 585.8132717195124 1169.6119905058247 2 585.8135986328125 MULTI HCD FTMS 0 0 0 27366 46471.68359375 0.3979288601897508 -40 0.390350341796875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 8.155526934196011 0.2891920862272901 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.36137587715 0 778.36137587715 0 27.703037561203843 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 6 NaN NaN 102856.1 NaN 21971 5394 27366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27368 106.86 NaN 127490 35 0 12273 0.261 + 13844 KYPSPFFVF 9 39 566.2975113229083 1130.5804697126166 2 566.2977294921875 MULTI HCD FTMS 0 0 0 27366 44250.64453125 0.48194325983578773 -40 0.390350341796875 2 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 20.41453444215458 0.18397929046831515 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 29.855 0 0 2.6407 2.6407 80.379 0 0 0 0.9247782126794846 16.478174818886373 0.9247782126794846 0.9247782126794846 0 1.274227503252014 0 0 0 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 2.6407;2.5589 +;- + 35 NaN NaN 104952.5 NaN 21972 5394 27366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27369 106.86 NaN 53733 35 0 11975 0.261 + 20109 NYIPRFWTF 9 25 622.316455901677 1242.618358870154 2 622.3167724609375 MULTI HCD FTMS 0 0 0 27366 15950.8896484375 0.26418968255529224 -52 0.4928131103515625 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 9.38312468134398 0.279288223203164 2 [YN]{I|L} 3 6 36.695 0 0 2.953 0 0 0 849.4057178391571 849.4057178391571 36.69469995980698 0 0 0 0 0.9247425010840047 1.6989700043360187 0 0 + [YN]{I|L} 2.953 + + 7 NaN NaN 106196.6 NaN 21973 5394 27366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27370 106.87 NaN 38766 35 0 5482.9 0.261 + 35650 YYIFIPSKF 9 28 589.320556640625 NaN 0 589.320556640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.22786006501039813 2 {I|L} 1 8 5.4846 0 0 0.46612 0 0 326.1349611310562 734.3891085260374 1060.5240696570936 0 0 0 0 0 0 0 0 0 + {I|L} 0.46612 + + 1 + NaN NaN 93124.7 NaN 21974 5394 27366 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27372 106.87 NaN 53383 35 0 6062.7 0.327 + 24274 RYFLPPYTF 9 28 602.3132366466748 1202.6119203601495 2 602.31298828125 MULTI HCD FTMS 0 0 0 27371 4297.9306640625 0.13525226988222483 -3 0.045166015625 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.24021115267848145 2 SQAAT{M(Oxidation (M))|F} 6 7 31.643 0 0 2.6312 0 0 579.3163319318375 0 579.3163319318375 0 31.64320017660792 0 0 0 0.9247425010840047 0 0 0 SQAAT{M(Oxidation (M))|F} 2.6312 - 26 NaN NaN 91670.3 NaN 21975 5395 27371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27373 106.88 NaN 43946 35 0 4896.3 0.261 + 35640 YYIFIPSKF 9 31 589.3191775760457 1176.6238022188913 2 589.3187255859375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 13.90604991867851 0.24021115267848145 2 YY{I|L} 3 6 30.942 0 0 2.6297 0 0 0 734.3838595025999 734.3838595025999 30.94212497064703 0 0 0 0 0.5 1.6989700043360187 0 0 + YY{I|L} 2.6297 + + 2 + NaN NaN 102762.1 NaN 21976 5395 27371 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27375 106.88 NaN 800560 35 0 175250 0.327 + 20508 PDIFAVIII 9 34 500.8075944233439 999.6006359134878 2 500.8076477050781 MULTI HCD FTMS 0 0 0 27374 695062.25 0.7324090219705004 -5 0.06252288818359375 1 Unmodified _PDIFAVIII_ ENSG00000139514|ENST00000380752|SLC7A1 34.10243960390752 0.09241788333544565 2 AV{I|L}{I|L}{I|L} 5 4 55.701 0 0 5.5723 0 0 472.23448378730626 0 472.23448378730626 0 55.70107520596089 0 0 0 1.9247425010840047 0 0 0 + AV{I|L}{I|L}{I|L} 5.5723 + + 30 NaN NaN 213830.5 NaN 21977 5396 27374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27376 106.89 NaN 106110 35 0 34056 0.261 + 25662 SHQLCQDLPPC 11 18 620.7762524545525 1239.537951975905 2 621.276123046875 MULTI HCD FTMS 0 0 0 27374 30552.189453125 0.47238730252949596 -5 0.06252288818359375 2 Unmodified _SHQLCQDLPPC_ nc|ENSG00000197558|A2VEC9|SSPOP 1.1933415558491238 0.4136870758253112 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 105576.9 NaN 21978 5396 27374 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27380 106.9 NaN 97289 35 0 18406 0.411 + -1 RALWMLEPE 9 46 580.7926686669904 NaN 0 580.8051147460938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _RALWM(Oxidation (M))LEPE_ REV__CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;REV__ENSG00000110274|ENST00000278935|CEP164;REV__nc|ENSG00000110274|Q9UPV0-2|CEP164 9.38312468134398 0.24977752951804 2 EP{I|L}Y 4 -1 23.175 0 0 1.9986 0 0 147.0522478170223 507.2587984674438 654.3110462844661 0 0 0 0 0 0 0 0.4247425010840047 0 EP{I|L}Y 1.9986 - 17 + NaN NaN 120472.3 NaN 21979 5399 27379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27383 106.92 NaN 57861 35 0 11567 0.411 + 17543 LYVDSLFFL 9 45 558.8027447454041 NaN 0 558.8025512695312 PEAK HCD FTMS 0 0 0 27382 19299.111328125 0.42911983302745443 2 -0.0233154296875 1 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 21.74664581756881 0.17567436591797916 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 6 23.94 0 0 2.146 0 0 131.09855923649178 574.2492159479124 705.3477751844041 0 0 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 2.146 + + 21 + NaN NaN 110644.2 NaN 21980 5401 27382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27385 106.93 NaN 2432300 35 0 586120 0.327 + -1 HLNRQLMIF 9 66 594.3212484657572 1186.6279439983143 2 594.3214111328125 MULTI HCD FTMS 0 0 0 27384 275662.8125 0.15489064569863764 1 -0.01604461669921875 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 36.04419817259434 0.08350412372117409 2 {I|L}N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 7 -1 92.912 0 0 7.8299 0 0 326.12593276191564 0 326.12593276191564 0 27.716072845057056 0 0 0 3.0669015600442577 0 0.3807196863200844 1.6989700043360187 {I|L}N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 7.8299 - 426 NaN NaN 452556.1 NaN 21981 5402 27384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27386 106.93 NaN 274180 35 0 68901 0.261 + 5231 FFDEYFVLL 9 30 596.7999803195133 1191.5854077058266 2 597.3021240234375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FFDEYFVLL_ ENSG00000205413|ENST00000379958|SAMD9 7.289230182591677 0.29575926068275815 2 {I|L}{I|L} 2 7 20.969 0 0 1.7598 0 0 947.4061146466812 0 947.4061146466812 0 15.484550065040281 0 0 0 0 0 0 0 + {I|L}{I|L} 1.7598 + + 2 NaN NaN 146126.1 NaN 21982 5402 27384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27387 106.93 NaN 53655 35 0 10222 0.261 + 10344 ILPTLVPWYF 10 29 624.8549890144112 NaN 0 624.8543090820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ILPTLVPWYF_ ENSG00000099194|ENST00000370355|SCD 3.5964929083625545 0.337106189561315 2 D{I|L} 2 9 11.766 0 0 0.94302 0 0 537.3537635739411 479.1968172662719 1016.5505808402131 0 0 0 0 0 0.3807196863200844 0 0 0 D{I|L} 0.94302 - 13 + NaN NaN 96701.5 NaN 21983 5402 27384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27388 106.94 NaN 26189 35 0 4340.6 0.261 -1 MKKKMMEIF 9 20 601.3105841163263 NaN 0 601.3101806640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Oxidation (M) _M(Oxidation (M))KKKMMEIF_ tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1 3.5964929083625545 0.27781873954207675 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95060.3 NaN 21984 5402 27384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27390 106.94 NaN 59365 35 0 5301.6 0.411 + 32863 WWVSPEPL 8 46 507.25669674601454 NaN 0 507.25628662109375 PEAK HCD FTMS 0 0 0 27389 4620.876953125 0.17898786615648948 4 -0.034881591796875 1 Unmodified _WWVSPEPL_ REV__ENSG00000112655|ENST00000230419|PTK7;REV__nc|ENSG00000112655|Q13308-2|PTK7;REV__nc|ENSG00000112655|Q13308-3|PTK7;REV__nc|ENSG00000112655|Q13308-4|PTK7;REV__nc|ENSG00000112655|Q13308-5|PTK7;REV__nc|ENSG00000112655|Q13308-6|PTK7 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107392 NaN 21985 5403 27389 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27392 106.95 NaN 438900 35 0 68316 0.327 -1 0 46 605.3120769682333 1208.6096010032666 2 605.312255859375 MULTI HCD FTMS 0 0 0 27391 217153.6875 0.9553116068980388 1 -0.0127410888671875 1 NaN NaN 2 YY{I|L}N{I|L}{I|L} 6 -1 69.742 0 0 5.7704 0 0 0 426.16594558314074 426.16594558314074 34.704999916446795 0 0 0 0 2.3807196863200843 2 0 0.805462187404089 YY{I|L}N{I|L}{I|L} 5.7704 - 116 NaN NaN 167703.2 NaN 21986 5404 27391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27393 106.95 NaN 99801 35 0 16007 0.261 + -1 KEMKEAVQF 9 31 563.2834197146484 NaN 0 563.3026123046875 PEAK HCD FTMS 0 0 0 27391 5209.7646484375 1 0 0 2 Oxidation (M) _KEM(Oxidation (M))KEAVQF_ REV__ENSG00000136147|ENST00000378319|PHF11;REV__ENST00000482487.5_1_13:50070137-50095117:+|nuORF 7.910154910731844 0.25691533546754686 2 QV{I|L} 3 -1 14.693 0 0 1.3065 0 0 165.04061963662008 616.2788179986936 781.3194376353138 0 0 0 0 0 0 0 0 0 QV{I|L} 1.3065 - 11 + NaN NaN 99987.9 NaN 21987 5404 27391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27394 106.96 NaN 78435 35 0 11856 0.261 + 16896 LYFLHFII 8 41 533.3087803325834 NaN 0 533.32080078125 PEAK HCD FTMS 0 0 0 27391 10887.357421875 0.9923142877665453 4 -0.03470611572265625 3 Unmodified _LYFLHFII_ chr12:69359236-69362788|165|13.48|0.22|5.96|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|7 6.354104778181461 0.38822285293237185 2 G 1 8 6.9897 0 0 0.65655 0 0 358.20031105403547 646.3606968630606 1004.561007917096 0 0 0 0 0 0 0 0 0 G 0.65655 - 7 + NaN NaN 99920.8 NaN 21988 5404 27391 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27397 106.97 NaN 172900 35 0 19085 0.411 -1 0 67 511.7984568814445 1021.582360829689 2 511.7985534667969 MULTI HCD FTMS 0 0 0 27396 52540.6484375 0.2478243155888618 5 -0.0534820556640625 1 NaN NaN 2 {I|L}VA{I|L}DPE 7 -1 54.161 0 0 5.3017 0 0 266.1595936505875 0 266.1595936505875 0 26.726307269461742 0 0 0 1.6861818737241734 0 0 0 {I|L}VA{I|L}DPE 5.3017 - 74 NaN NaN 151237.4 NaN 21989 5406 27396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27399 106.98 NaN 158770 35 0 28273 0.411 + 13659 KYPENFFLL 9 62 585.8132717195124 1169.6119905058247 2 585.813720703125 MULTI HCD FTMS 0 0 0 27398 42186.59375 0.36123638887236903 -27 0.2594451904296875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 30.7034409873982 0.10802119112323902 2 [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L} 9 0 + 43.923 0 0 3.7554 3.7554 85.324 0 0 0 2.949171771974761 23.490306066298885 2.949171771974761 9.208187539523749 0 1.5356668758921828 0 0 0.3494850021680094 + + [YK]PEN{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEGG{M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L};{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]}QN[{M(Oxidation (M))|F}E]{M(Oxidation (M))|F}{I|L}{I|L};[{M(Oxidation (M))|F}V][YT]G[NP]{M(Oxidation (M))|F}{I|L}{I|L};[YK]PEN{M(Oxidation (M))|F}{I|L}{I|L}{M(Oxidation (M))|F} 3.7554;2.9681;2.341;1.485;1.2754 +;-;-;-;- + 149 NaN NaN 144815.2 NaN 21990 5407 27398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27401 106.98 NaN 133330 35 0 17383 0.327 + 13845 KYPSPFFVF 9 47 566.2975113229083 1130.5804697126166 2 566.2969360351562 MULTI HCD FTMS 0 0 0 27400 44518.35546875 0.4848589570709168 -26 0.24657440185546875 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 22.736283301280096 0.1639198954644489 2 V{M(Oxidation (M))|F} 2 7 27.959 0 0 2.473 0 0 866.4324485535054 0 866.4324485535054 0 10 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.473 + + 39 NaN NaN 124047.6 NaN 21991 5408 27400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27402 106.99 NaN 54976 35 0 6088.8 0.263 -1 0 32 453.2096055252334 452.20232905863344 1 453.2093811035156 MULTI HCD FTMS 0 0 0 27400 32563.125 0.5583859846736171 29 -0.29581451416015625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108220.3 NaN 21992 5408 27400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27403 106.99 NaN 43140 35 0 7813.9 0.261 + 10342 ILPTLVPWYF 10 30 624.8549196126248 1247.6952862920496 2 624.7857055664062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _ILPTLVPWYF_ ENSG00000099194|ENST00000370355|SCD 3.5964929083625545 0.45626689593999237 2 V 1 9 11.99 0 0 0.96095 0 0 611.2749467323086 534.3283175104124 1145.603264242721 0 0 0 0 0 0.5 0 0 0 + V 0.96095 + + 12 + NaN NaN 102192.7 NaN 21993 5408 27400 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27405 107 NaN 37152 35 0 7272.3 0.327 + 28835 TVFFERFKE 9 22 601.8115234375 NaN 0 601.8115234375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TVFFERFKE_ REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101387 NaN 21994 5409 27404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27406 107 NaN 74697 35 0 12503 0.261 + 17544 LYVDSLFFL 9 31 558.8025836169769 NaN 0 558.802734375 PEAK HCD FTMS 0 0 0 27404 18742.58203125 1 0 0 2 Unmodified _LYVDSLFFL_ ENSG00000185686|ENST00000405655|PRAME 25.399314129420986 0.1511568710901456 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 3 6 21.95 0 0 1.9676 0 0 131.09514123341313 574.2511080377561 705.3462492711692 0 0 0 0 0 0.9247425010840047 0 0 0 + {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L} 1.9676 + + 30 + NaN NaN 95357 NaN 21995 5409 27404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27407 107.01 NaN 49429 35 0 11958 0.261 + 5666 FNYNVMWYI 9 23 625.2870270740299 NaN 0 625.3565063476562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _FNYNVMWYI_ REV__ENSG00000111335|ENST00000392583|OAS2;REV__nc|ENSG00000111335|P29728|OAS2 2.302733041254933 0.2840881193086663 2 V 1 -1 6.9897 0 0 0.55982 0 0 612.1382271266936 534.3274019830686 1146.4656291097622 0 0 0 0 0 0 0 0 0 V 0.55982 + + 2 + NaN NaN 113935.1 NaN 21996 5409 27404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27409 107.01 NaN 994080 35 0 221580 0.327 + 20509 PDIFAVIII 9 31 500.8075944233439 999.6006359134878 2 500.8075866699219 MULTI HCD FTMS 0 0 0 27408 437160 0.46064928435492497 9 -0.084014892578125 1 Unmodified _PDIFAVIII_ ENSG00000139514|ENST00000380752|SLC7A1 26.88365393820708 0.12808753336095696 2 AV{I|L}{I|L}{I|L} 5 4 50.573 0 0 5.0593 0 0 472.2315846173844 0 472.2315846173844 0 24.631068929195408 0 0 0 1.5 0 0 0 + AV{I|L}{I|L}{I|L} 5.0593 + + 33 NaN NaN 245389.2 NaN 21997 5410 27408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27410 107.01 NaN 151170 35 0 51252 0.261 + -1 SCELRGPMQF 10 30 620.7762524545525 1239.537951975905 2 620.7764282226562 MULTI HCD FTMS 0 0 0 27408 62490.42578125 0.6257096634699477 10 -0.09671783447265625 2 Carbamidomethyl (C),Oxidation (M) _SC(Carbamidomethyl (C))ELRGPM(Oxidation (M))QF_ REV__nc|ENSG00000170365|Q15797-2|SMAD1 2.735195868890462 0.4608258780945842 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110941 NaN 21998 5410 27408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27411 107.02 NaN 60099 35 0 7791.2 0.261 + 24287 RYFLPPYTF 9 26 602.3135301789137 NaN 0 602.3139038085938 PEAK HCD FTMS 0 0 0 27408 18051.86328125 0.5586027186885892 -14 0.12868499755859375 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.22786006501039813 2 C{I|L} 2 8 14.464 0 0 1.2027 0 0 579.318453324821 404.18183313541255 983.5002864602336 0 0 0 0 0 0.5 0 0 0 C{I|L} 1.2027 - 42 + NaN NaN 118819.4 NaN 21999 5410 27408 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27413 107.02 NaN 50619 35 0 5093 0.327 + 35873 YYRHVIKEA 9 36 589.8205300522961 NaN 0 589.8206787109375 PEAK HCD FTMS 0 0 0 27412 11257.2880859375 0.809362687063257 1 -0.00714874267578125 1 Unmodified _YYRHVIKEA_ REV__ENSG00000103381|ENST00000381774|CPPED1;REV__nc|ENSG00000103381|Q9BRF8-2|CPPED1 2.302733041254933 0.2840881193086663 2 {I|L}M 2 -1 9.068 0 0 0.77003 0 0 327.13197256926736 603.3575533502561 930.4895259195234 0 0 0 0 0 0.3494850021680094 0 0 0 {I|L}M 0.77003 - 5 + NaN NaN 102686.5 NaN 22000 5411 27412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27417 107.04 NaN 401200 35 0 93675 0.327 + -1 HLNRQLMIF 9 45 594.3212484657572 1186.6279439983143 2 594.3212890625 MULTI HCD FTMS 0 0 0 27416 327717.03125 0.18413910137680653 13 -0.1234588623046875 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 28.486842064014134 0.11819662193267319 2 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6 -1 74.826 0 0 6.3057 0 0 439.21077162910314 0 439.21077162910314 0 37.20114073819602 0 0 0 2.2614393726401687 0 0 1.6549471895720984 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6.3057 - 96 NaN NaN 170537.7 NaN 22001 5414 27416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27418 107.05 NaN 74428 35 0 15811 0.261 + 20110 NYIPRFWTF 9 25 622.316455901677 1242.618358870154 2 622.316162109375 MULTI HCD FTMS 0 0 0 27416 24169.677734375 0.40031494348239927 -32 0.30574798583984375 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 2 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4053516282196 849.4053516282196 28.494850021680094 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 14 NaN NaN 108905.8 NaN 22002 5414 27416 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27420 107.05 NaN 66700 35 0 13397 0.327 -1 0 33 579.2928700297438 578.2855935631437 1 580.2960815429688 MULTI HCD FTMS 0 0 0 27419 10100.107421875 0.467901893294132 -12 0.11075592041015625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98669.9 NaN 22003 5415 27419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27421 107.06 NaN 41449 35 0 5165.5 0.261 + 35651 YYIFIPSKF 9 30 589.3192415501857 NaN 0 589.3204345703125 PEAK HCD FTMS 0 0 0 27419 9436.6396484375 0.4588965229815379 -20 0.180877685546875 2 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 19.256988751693697 0.19238547928067054 2 {I|L} 1 8 13.979 0 0 1.1881 0 0 326.1303020699266 734.3890474908811 1060.5193495608078 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.1881 + + 2 + NaN NaN 97361.9 NaN 22004 5415 27419 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27423 107.06 NaN 39582 35 0 7600.5 0.327 + 10343 ILPTLVPWYF 10 29 624.8549196126248 1247.6952862920496 2 624.855224609375 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _ILPTLVPWYF_ ENSG00000099194|ENST00000370355|SCD 1.4819007175156935 0.4674597685733628 2 Y[HQ] 3 10 7.4473 0 0 0.59688 0 0 801.5010551902902 0 801.5010551902902 0 0.45757490560674974 0 0 0 0 0 0 0 Y[HQ] 0.59688 - 16 + NaN NaN 97343.4 NaN 22005 5416 27422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27424 107.07 NaN 33133 35 0 5242.4 0.261 + 2483 DRTKFLAVVM 10 23 590.3321426374938 NaN 0 590.3317260742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _DRTKFLAVVM_ REV__ENSG00000253305|ENST00000520790|PCDHGB6;REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 2.9952420565917617 0.3376207769591857 2 {M(Oxidation (M))|F} 1 -1 9.6041 0 0 0.81484 0 0 531.3173481638563 497.24054895572505 1028.5578971195814 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.81484 + + 1 + NaN NaN 100405.3 NaN 22006 5416 27422 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27426 107.07 NaN 92981 35 0 16243 0.327 -1 0 35 605.3120769682333 1208.6096010032666 2 605.3125 MULTI HCD FTMS 0 0 0 27425 55628.1640625 0.2447217517286443 14 -0.1295013427734375 1 NaN NaN 2 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 6 -1 41.171 0 0 3.4065 0 0 0 426.16550623111567 426.16550623111567 17.35863111416478 0 0 0 0 0.8494850021680094 2 0 0 YY{I|L}{[QV]|[N{I|L}]|[RA]|[KV]}{I|L} 3.4065 - 10 + NaN NaN 120715.4 NaN 22007 5417 27425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27427 107.08 NaN 124160 35 0 30838 0.263 + 30333 VLCFGFLY 8 43 481.2460648976926 960.4775768621852 2 481.24530029296875 MULTI HCD FTMS 0 0 0 27425 20606.80078125 0.20984131532683725 -9 0.08725738525390625 2 Unmodified _VLCFGFLY_ REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|70|1|anti-sense 2.8892196856762586 0.5377058178582064 2 T 1 -1 8.2268 0 0 0.85653 0 0 167.05919414909766 689.3425387018186 856.4017328509162 0 0 0 0 0 0.4247425010840047 0 0 0 T 0.85653 - 5 + NaN NaN 121288.8 NaN 22008 5417 27425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27428 107.08 NaN 110200 35 0 16323 0.261 + 6550 FPLDFIVQF 9 42 563.3026599453377 1124.5907669574754 2 563.8047485351562 MULTI HCD FTMS 0 0 0 27425 8671.671875 0.026996485510330653 48 -0.48371124267578125 3 Unmodified _FPLDFIVQF_ ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 19.256988751693697 0.19398022840297344 2 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 4 5 40.662 0 0 3.6157 0 0 585.3177967755875 0 585.3177967755875 0 40.66183773464459 0 0 0 1.2614393726401687 0 0 0 {M(Oxidation (M))|F}VQ{M(Oxidation (M))|F} 3.6157 - 17 NaN NaN 123169.2 NaN 22009 5417 27425 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27430 107.08 NaN 50993 35 0 6432.2 0.327 + 7709 FYLLLGNLL 9 27 533.3206701709674 1064.6267874087348 2 533.321533203125 MULTI HCD FTMS 0 0 0 27429 19026.458984375 0.2544811081702109 18 -0.16326904296875 1 Unmodified _FYLLLGNLL_ ENSG00000065150|ENST00000651721|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF;nc|ENSG00000065150|O00410-3|IPO5 7.910154910731844 0.2910521888787154 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109200.3 NaN 22010 5418 27429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27431 107.09 NaN 59272 35 0 8758.7 0.261 + 15132 LMLFWFFI 8 36 558.802468669615 NaN 0 558.8024291992188 PEAK HCD FTMS 0 0 0 27429 18865.353515625 0.7187308836018258 2 -0.02240753173828125 2 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 17.086550045450526 0.386433553673079 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.217 0 0 1.8122 0 0 131.09799841159173 687.3328341119749 818.4308325235666 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8122 + + 7 + NaN NaN 109048.4 NaN 22011 5418 27429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27433 107.09 NaN 159310 35 0 19812 0.327 + 6975 FPVRYKGR 8 57 511.7984568814445 1021.582360829689 2 511.7983703613281 MULTI HCD FTMS 0 0 0 27432 76533.5859375 0.36099447034964616 18 -0.18603515625 1 Unmodified _FPVRYKGR_ REV__ENSG00000007047|ENST00000262891|MARK4;REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF;REV__nc|ENSG00000007047|Q96L34-2|MARK4 9.347437153973935 0.5250182646323369 2 VA{I|L}DPE 6 -1 41.235 0 0 4.0364 0 0 379.24437148261876 0 379.24437148261876 0 19.469034597845436 0 0 0 0.7614393726401688 0 0 0 VA{I|L}DPE 4.0364 - 27 NaN NaN 109537 NaN 22012 5419 27432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27434 107.1 NaN 52923 35 0 8035.1 0.261 + 15632 LPEELFLLL 9 23 543.8259303626696 1085.6373077921392 2 543.825927734375 MULTI HCD FTMS 0 0 0 27432 15572.3134765625 0.010842699494831031 -16 0.15218353271484375 2 Unmodified _LPEELFLLL_ ENSG00000277150|ENST00000622749|F8A3 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5 5 37.959 0 0 3.4965 0 0 434.24925429511876 0 434.24925429511876 0 37.95880017344075 0 0 0 0 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 3.4965 - 14 NaN NaN 97544.3 NaN 22013 5419 27432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27435 107.1 NaN 99198 35 0 10599 0.261 + 11695 KAKAEELLI 9 45 507.81532135189866 NaN 0 507.8150634765625 PEAK HCD FTMS 0 0 0 27432 14636.0927734375 0.43674500321132625 -3 0.03192901611328125 3 Unmodified _KAKAEELLI_ REV__ENSG00000160710|ENST00000368474|ADAR;REV__nc|ENSG00000160710|P55265-2|ADAR;REV__nc|ENSG00000160710|P55265-3|ADAR;REV__nc|ENSG00000160710|P55265-4|ADAR;REV__nc|ENSG00000160710|P55265-5|ADAR 8.745405648335112 0.25286782695573473 2 {I|L} 1 -1 6.9897 0 0 0.68958 0 0 131.09621083209714 766.4125072468363 897.5087180789335 0 0 0 0 0 0 0 0 0 {I|L} 0.68958 + + 1 + NaN NaN 107028.9 NaN 22014 5419 27432 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27437 107.11 NaN 115000 35 0 13196 0.327 + 13660 KYPENFFLL 9 34 585.8132717195124 1169.6119905058247 2 585.8136596679688 MULTI HCD FTMS 0 0 0 27436 72750.921875 0.6229533595672402 -14 0.1372833251953125 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 31.198 0 0 2.6674 0 0 778.3633900373062 0 778.3633900373062 0 25.713337517843655 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.6674 + + 15 NaN NaN 103259.7 NaN 22015 5420 27436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27438 107.11 NaN 170100 35 0 19327 0.261 + 5363 FGHAANIRVF 10 49 566.3089663728499 NaN 0 566.2973022460938 PEAK HCD FTMS 0 0 0 27436 4785.53369140625 0.48602664584653066 -6 0.0633087158203125 2 Unmodified _FGHAANIRVF_ REV__ENSG00000119487|ENST00000265960|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;REV__nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1 7.289230182591677 0.3339457182549222 2 V{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.9702 0 0 165.1040834866946 716.3357027643186 881.4397862510132 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.9702 + + 21 + NaN NaN 138484.6 NaN 22016 5420 27436 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27442 107.13 NaN 159920 35 0 29607 0.327 + 10257 IITWEIIL 8 30 500.8075944233439 999.6006359134878 2 500.8076477050781 MULTI HCD FTMS 0 0 0 27441 136947.375 0.1443057697136873 22 -0.22284698486328125 1 Unmodified _IITWEIIL_ ENSG00000163606|ENST00000308611|CD200R1;ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000163606|Q8TD46-1|CD200R1;nc|ENSG00000163606|Q8TD46-2|CD200R1;nc|ENSG00000163606|Q8TD46-3|CD200R1;nc|ENSG00000206531|Q6Q8B3|CD200R1L 26.34127834903884 0.3999841173197873 2 V{I|L}{I|L}{I|L} 4 5 43.047 0 0 4.3065 0 0 543.2701893537125 0 543.2701893537125 0 43.047444008242906 0 0 0 1.3494850021680094 0 0 0 V{I|L}{I|L}{I|L} 4.3065 - 28 NaN NaN 113404.3 NaN 22017 5423 27441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27443 107.13 NaN 199470 35 0 29584 0.261 + 19286 NLRAASRSS 9 43 481.26140307283254 NaN 0 481.24658203125 PEAK HCD FTMS 0 0 0 27441 4586.09130859375 1 0 0 2 Unmodified _NLRAASRSS_ ENST00000319080.7_12:122516865-122517156:+|nuORF 3.944395688203298 0.27613285122220627 2 AT 2 8 8.3155 0 0 0.86574 0 0 96.04928212047135 689.3439726523 785.3932547727713 0 0 0 0 0 0 0 0.4247425010840047 0 AT 0.86574 - 6 + NaN NaN 123837.4 NaN 22018 5423 27441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27444 107.14 NaN 41218 35 0 6828.8 0.261 -1 0 28 453.2096287178587 452.20235225125873 1 453.20953369140625 MULTI HCD FTMS 0 0 0 27441 52687.5390625 0.8902806480932048 -30 0.28740692138671875 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92547.9 NaN 22019 5423 27441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27445 107.14 NaN 39043 35 0 6601.1 0.261 + 30154 VGTYIIDLLTF 11 19 627.8538208007812 NaN 0 627.8538208007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 Unmodified _VGTYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1 4.897010918128616 0.3282287337590871 2 M 1 11 3.4949 0 0 0.27876 0 0 663.3513855451187 456.27305017642817 1119.624435721547 0 0 0 0 0 0 0 0 0 M 0.27876 - 1 + NaN NaN 87420.1 NaN 22020 5423 27441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27449 107.16 NaN 64277 35 0 7094.3 0.411 + 24288 RYFLPPYTF 9 44 602.3135301789137 NaN 0 602.3133544921875 PEAK HCD FTMS 0 0 0 27448 29012.046875 0.8977581985084473 1 -0.0073394775390625 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.22786006501039813 2 T 1 8 10.485 0 0 0.87181 0 0 165.0788642443386 933.4639376275999 1098.5428018719385 0 0 0 0 0 0.5 0 0 0 + T 0.87181 + + 10 + NaN NaN 112982.1 NaN 22021 5426 27448 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27451 107.17 NaN 350220 35 0 78361 0.327 + -1 HLNRQLMIF 9 49 594.3212484657572 1186.6279439983143 2 594.3215942382812 MULTI HCD FTMS 0 0 0 27450 236900.703125 0.13311081948528153 26 -0.26923370361328125 1 Oxidation (M) _HLNRQLM(Oxidation (M))IF_ REV__nc|ENSG00000164244|Q96M27-5|PRRC1 15.847184025352803 0.2234401846867398 2 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 6 -1 65.31 0 0 5.5038 0 0 439.21077162910314 0 439.21077162910314 0 59.36767615529696 0 0 0 2.2614393726401687 0 0 0.8494850021680094 N{I|L}{I|L}E{I|L}{M(Oxidation (M))|F} 5.5038 - 101 NaN NaN 135715.1 NaN 22022 5427 27450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27452 107.17 NaN 223830 35 0 64867 0.261 -1 0 26 579.2928700297438 578.2855935631437 1 579.2924194335938 MULTI HCD FTMS 0 0 0 27450 32320.755859375 0.5201778324925876 -10 0.09537506103515625 2 NaN NaN 2 H 1 -1 3.0989 0 0 0.53588 0 0 85.1784596293531 353.03708826236567 438.21554789171876 0 0 0 0 0 0 0 0 0 H 0.53588 - 1 + NaN NaN 131610.3 NaN 22023 5427 27450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27453 107.17 NaN 51735 35 0 12466 0.261 + 20111 NYIPRFWTF 9 21 622.316455901677 1242.618358870154 2 622.3170776367188 MULTI HCD FTMS 0 0 0 27450 22351.349609375 0.37019853363235894 -19 0.1826324462890625 3 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 9.38312468134398 0.279288223203164 2 [YN]{I|L}Y 4 6 41.682 0 0 3.3544 0 0 0 686.3382662408811 686.3382662408811 41.68243764792422 0 0 0 0 1 1.6989700043360187 0 0 [YN]{I|L}Y 3.3544 - 18 + NaN NaN 102007.6 NaN 22024 5427 27450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27455 107.18 NaN 38692 35 0 2865.8 0.411 + 30153 VGTYIIDLLTF 11 38 627.8520776411491 1253.689602349098 2 627.8518676757812 MULTI HCD FTMS 0 0 0 27454 17924.642578125 1 0 0 1 Unmodified _VGTYIIDLLTF_ ENSG00000145990|ENST00000379287|GFOD1;nc|ENSG00000145990|Q9NXC2-2|GFOD1 10.799506525563784 0.36298595732910816 2 {I|L}T{M(Oxidation (M))|F} 3 8 31.198 0 0 2.4885 0 0 874.476366111525 0 874.476366111525 0 28.433677739595034 0 0 0 0.5 0 0 0 + {I|L}T{M(Oxidation (M))|F} 2.4885 + + 7 NaN NaN 110540.5 NaN 22025 5428 27454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27459 107.2 NaN 29171 35 0 5087.4 0.327 + 35978 YYVSYAVFVV 10 19 605.3123168945312 NaN 0 605.3123168945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YYVSYAVFVV_ ENSG00000135926|ENST00000258412|TMBIM1;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF 3.5964929083625545 0.337106189561315 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115659.2 NaN 22026 5431 27458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27460 107.21 NaN 33904 35 0 6257.7 0.261 + 14923 LLEDLIFFV 9 17 554.8169607000445 NaN 0 554.8167724609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLEDLIFFV_ ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98040.7 NaN 22027 5431 27458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27461 107.21 NaN 39577 35 0 5462.2 0.261 + 35652 YYIFIPSKF 9 28 589.3192415501857 NaN 0 589.3204345703125 PEAK HCD FTMS 0 0 0 27458 15667.6376953125 0.7619051621732593 -4 0.03412628173828125 3 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 25.399314129420986 0.1511568710901456 2 {I|L} 1 8 15.485 0 0 1.316 0 0 326.1268026113668 734.3884981744749 1060.5153007858416 0 0 0 0 0 0.8494850021680094 0 0 0 + {I|L} 1.316 + + 2 + NaN NaN 114308.9 NaN 22028 5431 27458 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27463 107.21 NaN 40181 35 0 5477.6 0.327 + 35653 YYIFIPSKF 9 26 589.3192415501857 NaN 0 589.3189086914062 PEAK HCD FTMS 0 0 0 27462 17772.294921875 0.864253023204216 -3 0.02618408203125 1 Unmodified _YYIFIPSKF_ ENSG00000213782|ENST00000358007|DDX47;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47 9.38312468134398 0.24977752951804 2 {I|L} 1 8 5.4846 0 0 0.46613 0 0 326.1354180595525 734.3875974623522 1060.5230155219047 0 0 0 0 0 0 0 0 0 + {I|L} 0.46613 + + 3 + NaN NaN 118843.8 NaN 22029 5432 27462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27464 107.22 NaN 92747 35 0 18963 0.261 + 28162 TKEFDYLPP 9 37 555.2781358421395 NaN 0 555.2780151367188 PEAK HCD FTMS 0 0 0 27462 4241.18212890625 0.23647915914561998 -17 0.160888671875 2 Unmodified _TKEFDYLPP_ ENSG00000162402|ENST00000294383|USP24 2.0597508629832335 0.2852655770354268 2 P 1 8 6.9897 0 0 0.63053 0 0 114.00741034701839 894.4619173400031 1008.4693276870215 0 0 0 0 0 0 0 0 0 + P 0.63053 + + 6 + NaN NaN 130074.4 NaN 22030 5432 27462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27466 107.22 NaN 450920 35 0 216180 0.411 + 15633 LPEELFLLL 9 47 543.8259303626696 1085.6373077921392 2 543.8260498046875 MULTI HCD FTMS 0 0 0 27465 138740.96875 0.09660264250665884 -2 0.02207183837890625 1 Unmodified _LPEELFLLL_ ENSG00000277150|ENST00000622749|F8A3 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 46.186 0 0 4.2542 0 0 581.305637702512 0 581.305637702512 0 42.2062251842808 0 0 0 1.4247425010840047 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.2542 + + 36 NaN NaN 228622.9 NaN 22031 5433 27465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27468 107.23 NaN 148020 35 0 16355 0.411 + 13846 KYPSPFFVF 9 63 566.2975113229083 1130.5804697126166 2 566.2976684570312 MULTI HCD FTMS 0 0 0 27467 91817.125 1 0 0 1 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 31.26834338654808 0.10542797264966089 2 [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 9 0 + 37.086 0 0 3.2803 3.2803 81.298 0 0 0 2.2184874961635614 9.94604968113294 2.2184874961635614 2.2184874961635614 0 2.048455006504028 0 0 0 + + [YK]PS{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[YQ][{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};{[CT]|[{M(Oxidation (M))|F}G]}S[{I|L}A]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F};[{M(Oxidation (M))|F}V][QT]{[ED]|[{M(Oxidation (M))|F}P]|[M{I|L}]}{M(Oxidation (M))|F}V{M(Oxidation (M))|F} 3.2803;3.084;3.0436;2.5515 +;-;-;- + 61 NaN NaN 151129.9 NaN 22032 5434 27467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27470 107.24 NaN 150690 35 0 19326 0.327 + 13661 KYPENFFLL 9 44 585.8132717195124 1169.6119905058247 2 585.8135986328125 MULTI HCD FTMS 0 0 0 27469 69071.421875 0.5914464476621784 1 -0.0095062255859375 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 24.990960013464015 0.14443998892849796 2 {M(Oxidation (M))|F}{I|L}{I|L} 3 6 34.253 0 0 2.9285 0 0 778.3629627912125 0 778.3629627912125 0 16.293709283484077 0 0 0 0.805462187404089 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L} 2.9285 + + 28 NaN NaN 117435.9 NaN 22033 5435 27469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27471 107.24 NaN 212000 35 0 160400 0.261 -1 LIWEVNCST 9 36 561.2661227218596 NaN 0 560.795166015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _LIWEVNC(Carbamidomethyl (C))ST_ ENST00000374994.8_2_9:101911597-101911711:+|nuORF 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 127343.3 NaN 22034 5435 27469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27473 107.25 NaN 73452 35 0 11925 0.327 + 28241 TLIEWILI 8 28 500.8075944233439 999.6006359134878 2 500.8076171875 MULTI HCD FTMS 0 0 0 27472 24793.92578125 0.026126141841618485 35 -0.346649169921875 1 Unmodified _TLIEWILI_ REV__ENSG00000047936|ENST00000368507|ROS1;REV__nc|ENSG00000047936|P08922|ROS1 13.50788311687929 0.4944073034352369 2 C(Carbamidomethyl (C)){I|L}{I|L}{I|L} 4 -1 40.433 0 0 4.0449 0 0 482.30647475410314 0 482.30647475410314 0 40.43305028184122 0 0 0 1 0 0 0 C(Carbamidomethyl (C)){I|L}{I|L}{I|L} 4.0449 - 11 NaN NaN 103462.9 NaN 22035 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27474 107.25 NaN 124410 35 0 17785 0.261 + 823 AVPIFIELL 9 41 507.81510398571334 1013.6156550382267 2 507.8153381347656 MULTI HCD FTMS 0 0 0 27472 6714.59765625 0.03978656491549061 1 -0.032470703125 2 Unmodified _AVPIFIELL_ ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1 11.640296217721598 0.25978676193971967 2 {I|L}{I|L} 2 7 25.969 0 0 2.562 0 0 769.4390362141437 0 769.4390362141437 0 25.969100130080562 0 0 0 0.5 0 0 0 + {I|L}{I|L} 2.562 + + 8 NaN NaN 116086.6 NaN 22036 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27475 107.26 NaN 86634 35 0 18571 0.261 + 6976 FPVRYKGR 8 33 511.7984568814445 1021.582360829689 2 511.79833984375 MULTI HCD FTMS 0 0 0 27472 15687.8818359375 0.07399677572793846 34 -0.33986663818359375 3 Unmodified _FPVRYKGR_ REV__ENSG00000007047|ENST00000262891|MARK4;REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF;REV__nc|ENSG00000007047|Q96L34-2|MARK4 5.230669730166228 0.5342319408533849 2 PE 2 -1 20.969 0 0 2.0526 0 0 777.4614861944902 0 777.4614861944902 0 20.969100130080562 0 0 0 0 0 0 0 PE 2.0526 - 1 NaN NaN 102478.3 NaN 22037 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27476 107.26 NaN 49330 35 0 5983 0.261 + 11046 IYFILHLF 8 32 533.3086514577169 NaN 0 533.3207397460938 PEAK HCD FTMS 0 0 0 27472 4975.451171875 0.4054045430250905 2 -0.0395965576171875 4 Unmodified _IYFILHLF_ REV__ENSG00000166603|ENST00000299766|MC4R 2.8892196856762586 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101986.2 NaN 22038 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27477 107.26 NaN 42015 35 0 6264.5 0.261 + 15133 LMLFWFFI 8 27 558.8025683361708 NaN 0 558.8025512695312 PEAK HCD FTMS 0 0 0 27472 5163.22802734375 0.08349110723374081 1 -0.032470703125 5 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 17.086550045450526 0.386433553673079 2 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 2 -1 20.217 0 0 1.8122 0 0 131.09389292058523 687.3380831354124 818.4319760559977 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F}{M(Oxidation (M))|F} 1.8122 + + 10 + NaN NaN 105176.1 NaN 22039 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27478 107.27 NaN 928120 35 0 296970 0.261 -1 VMHHVIFFI 9 41 579.8077068453861 NaN 0 579.8079833984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 6 Oxidation (M) _VM(Oxidation (M))HHVIFFI_ chr7:22473234-22492565|128|15.83|0.09|7.44|-|2|TE_info:LTR16D1,LTR16D1_dup108,ERVL,LTR,acceptor,-,22473050,22473234|None,STEAP1B|2 9.347437153973935 0.2499504662953367 2 {I|L} 1 -1 12.544 0 0 1.0836 0 0 425.23213890451694 616.2637423150999 1041.4958812196169 0 0 0 0 0 0.7059771852360797 0 0 0 {I|L} 1.0836 + + 2 + NaN NaN 225941 NaN 22040 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27479 107.27 NaN 79001 35 0 16017 0.261 + 3459 EFVPFLLNF 9 40 563.3023071289062 NaN 0 563.3023071289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 7 Unmodified _EFVPFLLNF_ ENSG00000140326|ENST00000356231|CDAN1;nc|ENSG00000140326|Q8IWY9-1|CDAN1 3.944395688203298 0.27613285122220627 2 Q 1 9 6.9897 0 0 0.62153 0 0 165.07809745918104 828.4361055963499 993.514203055531 0 0 0 0 0 0 0 0 0 Q 0.62153 - 1 + NaN NaN 100200.1 NaN 22041 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27480 107.27 NaN 50602 35 0 14219 0.261 + 3767 ENWNTWFML 9 23 620.7764282226562 NaN 0 620.7764282226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 8 Unmodified _ENWNTWFML_ REV__ENSG00000123384|ENST00000243077|LRP1;REV__ENSG00000168702|ENST00000389484|LRP1B;REV__LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;REV__LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;REV__LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92038 NaN 22042 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27481 107.28 NaN 53074 35 0 12725 0.261 + 2484 DRTKFLAVVM 10 26 590.3318852212766 NaN 0 590.3326416015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 9 Unmodified _DRTKFLAVVM_ REV__ENSG00000253305|ENST00000520790|PCDHGB6;REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 5.731851221503515 0.33527861879838866 2 {M(Oxidation (M))|F} 1 -1 14.732 0 0 1.2499 0 0 531.3183422252786 497.24070154361567 1028.5590437688943 0 0 0 0 0 0.9247425010840047 0 0 0 {M(Oxidation (M))|F} 1.2499 + + 2 + NaN NaN 105860.1 NaN 22043 5436 27472 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27484 107.29 NaN 82977 35 0 5918.7 0.412 + 23378 RKRRRWNKKSG 11 55 491.29922053058846 1470.8758321919654 3 491.2986755371094 MULTI HCD FTMS 0 0 0 27483 12259.609375 0.03856576438134884 -28 0.2771759033203125 1 Unmodified _RKRRRWNKKSG_ REV__nc|ENSG00000137309|P17096-3|HMGA1 0.09484139111097674 0.41850472438158626 2 P 1 -1 1.1092 0 0 0.075414 0 0 748.4479890296592 622.3535860650999 1370.801575094759 0 0 0 0 0 0 0 0 0 P 0.075414 - 1 + NaN NaN 104944 NaN 22044 5438 27483 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27486 107.29 NaN 63560 35 0 8340.9 0.326 + 24289 RYFLPPYTF 9 32 602.3135301789137 NaN 0 602.3138427734375 PEAK HCD FTMS 0 0 0 27485 24279.279296875 0.7513059018744586 14 -0.14170074462890625 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 10.073929032068715 0.24642998803896465 2 T 1 8 6.9897 0 0 0.58121 0 0 165.08141240668698 933.4580119055622 1098.5394243122491 0 0 0 0 0 0 0 0 0 + T 0.58121 + + 2 + NaN NaN 101935.4 NaN 22045 5439 27485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27487 107.3 NaN 55341 35 0 14301 0.261 + 20112 NYIPRFWTF 9 26 622.316455901677 1242.618358870154 2 622.3169555664062 MULTI HCD FTMS 0 0 0 27485 40336.3515625 0.6680785930820738 -7 0.08092498779296875 2 Unmodified _NYIPRFWTF_ ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 13.042465956692817 0.2476723265019929 2 [YN]{I|L} 3 6 37.447 0 0 3.0136 0 0 0 849.4053211106415 849.4053211106415 17.98332479720628 0 0 0 0 1 1.6989700043360187 0 0 + [YN]{I|L} 3.0136 + + 8 NaN NaN 96831.2 NaN 22046 5439 27485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27488 107.3 NaN 60656 35 0 13257 0.261 -1 0 29 590.3319082756213 1178.6492636180426 2 590.3316650390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.292 0 0 1.2126 0 0 500.2638398893301 528.2935169674602 1028.5573568567902 0 0 0 0 0 0.8807196863200843 0 0 0 {M(Oxidation (M))|F} 1.2126 - 2 + NaN NaN 103568.6 NaN 22047 5439 27485 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27490 107.31 NaN 65166 35 0 8793.5 0.411 + 24290 RYFLPPYTF 9 41 602.3135301789137 NaN 0 602.3115844726562 PEAK HCD FTMS 0 0 0 27489 17199.74609375 0.5322345277621058 15 -0.155487060546875 1 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 13.90604991867851 0.22786006501039813 2 T 1 8 5.4846 0 0 0.45605 0 0 165.07893143735583 933.4701021783811 1098.549033615737 0 0 0 0 0 0 0 0 0 + T 0.45605 + + 4 + NaN NaN 113243.5 NaN 22048 5440 27489 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27492 107.31 NaN 91290 35 0 13182 0.411 + 29543 TYYNKFTI 8 43 525.2672392512623 NaN 0 525.267333984375 PEAK HCD FTMS 0 0 0 27491 6442.42138671875 0.33629049187019927 6 -0.06758880615234375 1 Unmodified _TYYNKFTI_ REV__ENSG00000145029|ENST00000273598|NICN1;REV__ENST00000422593.5_1_3:49462567-49466699:-|nuORF;REV__ENST00000497742.6_1_3:49462781-49466699:-|nuORF;REV__nc|ENSG00000145029|Q9BSH3-2|NICN1;REV__NICN1|p.Y205*|1|0.52|ENSG00000145029|chr3:49424860-49424860|A/-|frameshift_variant 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117127 NaN 22049 5441 27491 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27495 107.33 NaN 122160 35 0 31768 0.327 + 14558 LFHRSNIGVEM 11 35 434.89053959875093 NaN 0 434.8822021484375 PEAK HCD FTMS 0 0 0 27494 4517.4560546875 1 0 0 1 Unmodified _LFHRSNIGVEM_ ENSG00000204361|ENST00000389586|NXPE2;nc|ENSG00000204361|Q96DL1-3|NXPE2 0.5059551277355931 0.3406848944787997 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111581.1 NaN 22050 5443 27494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27496 107.33 NaN 86283 35 0 22038 0.261 + 16180 LPVGSPPESII 11 26 554.8165934197941 1107.6186339063881 2 554.8173828125 MULTI HCD FTMS 0 0 0 27494 12578.03515625 0.09252236384949572 -1 0.00704193115234375 2 Unmodified _LPVGSPPESII_ ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN 4.897010918128616 0.3974440401582579 2 {I|L}P 2 9 20.969 0 0 1.8932 0 0 0 894.4586096045164 894.4586096045164 13.979400086720375 0 0 0 0 0 0 0 0 + {I|L}P 1.8932 + + 5 + NaN NaN 116040.4 NaN 22051 5443 27494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27497 107.34 NaN 46775 35 0 7272.7 0.261 + 24291 RYFLPPYTF 9 23 602.3135301789137 NaN 0 602.3135986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RYFLPPYTF_ ENSG00000023608|ENST00000216294|SNAPC1 6.723162845929126 0.26266733336404485 2 V 1 9 5.4846 0 0 0.45605 0 0 165.07859601448564 935.4450167291624 1100.523612743648 0 0 0 0 0 0 0 0 0 V 0.45605 - 1 + NaN NaN 99745.2 NaN 22052 5443 27494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27498 107.34 NaN 27847 35 0 4522.8 0.261 + -1 CRTELCFLL 9 25 606.2996515408469 NaN 0 605.8146362304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))RTELC(Carbamidomethyl (C))FLL_ REV__ENST00000520687.1_1_5:151043020-151043059:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95895.8 NaN 22053 5443 27494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27501 107.35 NaN 1603100 35 0 750310 0.327 + 15634 LPEELFLLL 9 41 543.8259303626696 1085.6373077921392 2 543.8258666992188 MULTI HCD FTMS 0 0 0 27500 337233.5625 0.23480918126019998 10 -0.10973358154296875 1 Unmodified _LPEELFLLL_ ENSG00000277150|ENST00000622749|F8A3 34.10243960390752 0.09241788333544565 2 {I|L}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 5 4 52.959 0 0 4.8781 0 0 468.2203846662125 0 468.2203846662125 0 52.47425010840047 0 0 0 1.8494850021680094 0 0 0 + {I|L}{M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.8781 + + 44 NaN NaN 339221.7 NaN 22054 5445 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27502 107.36 NaN 136210 35 0 17993 0.264 -1 0 47 405.1190141168658 808.2234753005316 2 405.11907958984375 MULTI HCD FTMS 0 0 0 27500 8142.1669921875 0.013357807092682753 -26 0.25876617431640625 2 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.67859 0 0 154.9968647624366 537.1176241510374 692.1144889134739 0 0 0 0 0 0 0 0 0 {I|L} 0.67859 - 3 + NaN NaN 116252 NaN 22055 5445 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27503 107.36 NaN 226870 35 0 21238 0.261 + 31017 VSLRRRSRFRR 11 72 496.9747056658839 1487.9022875978517 3 496.97467041015625 MULTI HCD FTMS 0 0 0 27500 71607.953125 0.24086193811780238 -8 0.07273101806640625 3 Unmodified _VSLRRRSRFRR_ ENST00000181839.8_1_7:39989715-39990237:+|nuORF 0.40826533853263924 0.41713015341995335 2 A 1 11 8.0989 0 0 0.54432 0 0 809.497515724608 604.3543184869749 1413.8518342115829 0 0 0 0 0 0.5 0 0 0 A 0.54432 - 9 + NaN NaN 118393.9 NaN 22056 5445 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27504 107.36 NaN 143170 35 0 15232 0.261 + 13847 KYPSPFFVF 9 49 566.2975113229083 1130.5804697126166 2 566.2977294921875 MULTI HCD FTMS 0 0 0 27500 43371.62890625 0.4723697121452017 11 -0.1168212890625 4 Unmodified _KYPSPFFVF_ ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 27.628801355627647 0.12213550946336599 2 V{M(Oxidation (M))|F} 2 7 29.464 0 0 2.6061 0 0 866.430339580074 0 866.430339580074 0 5.651668842475033 0 0 0 0.8494850021680094 0 0 0 + V{M(Oxidation (M))|F} 2.6061 + + 35 NaN NaN 133746.3 NaN 22057 5445 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27505 107.37 NaN 81581 35 0 14955 0.262 + 1899 CYYEGGMD 8 38 469.1580012415101 NaN 0 468.723388671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _CYYEGGMD_ REV__ENSG00000124299|ENST00000244137|PEPD;REV__nc|ENSG00000124299|P12955-2|PEPD;REV__nc|ENSG00000124299|P12955-3|PEPD 0.7936320650641473 0.38822285293237185 2 Q 1 -1 5.4846 0 0 0.58577 0 0 397.1579081453264 408.0669039361938 805.2248120815202 0 0 0 0 0 0 0 0 0 Q 0.58577 - 3 + NaN NaN 99692.4 NaN 22058 5445 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27506 107.37 NaN 99038 35 0 18718 0.261 + -1 RHTRCRFIRCL 11 36 525.6136208355811 NaN 0 525.8156127929688 PEAK HCD FTMS 0 0 0 27500 9932.947265625 0.48045231965592616 -4 0.038116455078125 6 2 Carbamidomethyl (C) _RHTRC(Carbamidomethyl (C))RFIRC(Carbamidomethyl (C))L_ REV__ENST00000533264.5_1_16:70069634-70099679:-|nuORF 0.09484139111097674 0.34185110575506755 2 V 1 -1 2.4743 0 0 0.23582 0 0 541.8599493354214 405.2616366022094 947.1215859376309 0 0 0 0 0 0 0 0 0 V 0.23582 - 1 + NaN NaN 108403.3 NaN 22059 5445 27500 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27508 107.38 NaN 92860 35 0 12740 0.327 + 13662 KYPENFFLL 9 36 585.8132717195124 1169.6119905058247 2 585.8138427734375 MULTI HCD FTMS 0 0 0 27507 61541.9375 0.5269727961079823 12 -0.1077117919921875 1 Unmodified _KYPENFFLL_ ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC 16.149105407346934 0.22083165093524068 2 C{M(Oxidation (M))|F}{I|L}{I|L} 4 6 35.433 0 0 3.0295 0 0 675.3368397443375 0 675.3368397443375 0 19.235162698957282 0 0 0 0.5 0 0 0 C{M(Oxidation (M))|F}{I|L}{I|L} 3.0295 - 21 NaN NaN 110775.6 NaN 22060 5446 27507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27510 107.38 NaN 65888 35 0 8652.9 0.327 + 10258 IITWEIIL 8 27 500.8075944233439 999.6006359134878 2 500.8075866699219 MULTI HCD FTMS 0 0 0 27509 40172.65625 0.042331195333971325 46 -0.35344696044921875 1 Unmodified _IITWEIIL_ ENSG00000163606|ENST00000308611|CD200R1;ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000163606|Q8TD46-1|CD200R1;nc|ENSG00000163606|Q8TD46-2|CD200R1;nc|ENSG00000163606|Q8TD46-3|CD200R1;nc|ENSG00000206531|Q6Q8B3|CD200R1L 19.438996006549623 0.45076845602799126 2 {I|L}{I|L}{I|L} 3 5 35.445 0 0 3.5459 0 0 642.3357233206523 0 642.3357233206523 0 35.44531259372398 0 0 0 0.9247425010840047 0 0 0 + {I|L}{I|L}{I|L} 3.5459 + + 7 NaN NaN 111434.2 NaN 22061 5447 27509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27511 107.39 NaN 52381 35 0 8593.2 0.261 + 26258 SQLPQHPLTP 10 35 559.3041381835938 NaN 0 559.3041381835938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _SQLPQHPLTP_ ENSG00000127124|ENST00000372583|HIVEP3;HIVEP3|p.E605Dfs*32|1|0.16|ENSG00000127124|chr1:41582983-41582983|C/-|frameshift_variant;HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant;HIVEP3|p.P927Lfs*14|1|0.41|ENSG00000127124|chr1:41582018-41582018|G/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3 1.1933415558491238 0.33916295405077446 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110565.4 NaN 22062 5447 27509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27513 107.39 NaN 1545900 35 0 482410 0.327 + 10373 IMFMLPIFF 9 42 579.8079879598856 NaN 0 579.8086547851562 PEAK HCD FTMS 0 0 0 27512 13541.609375 0.7247401299123085 1 -0.00933837890625 1 Unmodified _IMFMLPIFF_ REV__ENSG00000112486|ENST00000341935|CCR6 2.302733041254933 0.2840881193086663 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 342060.6 NaN 22063 5448 27512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27514 107.4 NaN 62324 35 0 9375.7 0.261 + 15134 LMLFWFFI 8 40 558.8026733398438 NaN 0 558.8026733398438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LMLFWFFI_ REV__tr|U7T3S8|U7T3S8_FUSNUProbablequeuosineprecursortransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00243PE=3SV=1 6.354104778181461 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.49206 0 0 277.1713369123061 687.3345430963499 964.505880008656 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.49206 + + 2 + NaN NaN 103337.5 NaN 22064 5448 27512 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27516 107.4 NaN 294260 35 0 85699 0.327 -1 MRVRWLRF 8 46 590.3319082756213 1178.6492636180426 2 590.3316040039062 MULTI HCD FTMS 0 0 0 27515 63668.953125 0.08337656154585725 -22 0.2337646484375 1 Oxidation (M) _M(Oxidation (M))RVRWLRF_ ENST00000531894.5_1_16:70011782-70023933:-|nuORF 4.75600775471527 0.5349361699807423 2 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 6 -1 44.654 0 0 3.7885 0 0 387.1789723126969 0 387.1789723126969 0 37.663800089887545 0 0 0 1.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 3.7885 - 27 NaN NaN 130184.6 NaN 22065 5449 27515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27517 107.41 NaN 71711 35 0 29348 0.261 + 5109 FELFVLACLF 10 21 601.3223540379114 NaN 0 601.321044921875 PEAK HCD FTMS 0 0 0 27515 7350.13623046875 0.12716679147019685 -8 0.085968017578125 2 Unmodified _FELFVLACLF_ REV__ENST00000466151.1_1_1:17409174-17409327:-|nuORF 3.5964929083625545 0.337106189561315 2 K 1 -1 3.9794 0 0 0.33144 0 0 536.2564501639102 533.2404879205686 1069.4969380844789 0 0 0 0 0 0 0 0 0 K 0.33144 - 1 + NaN NaN 97839.9 NaN 22066 5449 27515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27519 107.41 NaN 547750 35 0 41630 0.411 -1 WKKIVFVIFLH 11 87 491.29922053058846 1470.8758321919654 3 491.29913330078125 MULTI HCD FTMS 0 0 0 27518 222899.8125 0.7011888704261293 -16 0.17935943603515625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))WKKIVFVIFLH_ OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant 0.4545168274142398 0.41692731010159206 2 P 1 -1 5.0443 0 0 0.34295 0 0 704.4206382198104 666.3740328424436 1370.794671062254 0 0 0 0 0 0.3054621874040891 0 0 0 P 0.34295 - 12 + NaN NaN 266150.8 NaN 22067 5450 27518 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27521 107.42 NaN 167630 35 0 37730 0.327 -1 0 42 466.6285067498964 931.2424605665929 2 466.6285095214844 MULTI HCD FTMS 0 0 0 27520 33206.3203125 0.5194635252535807 1 -0.00942230224609375 1 NaN NaN 2 G 1 -1 0.9691 0 0 0.10407 0 0 739.1647303193257 132.0290468805297 871.1937771998554 0 0 0 0 0 0 0 0 0 G 0.10407 - 7 + NaN NaN 133297 NaN 22068 5451 27520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27522 107.42 NaN 59552 35 0 14123 0.261 + -1 MLYLSFIVVC 10 24 602.3135301789137 NaN 0 602.3145141601562 PEAK HCD FTMS 0 0 0 27520 13741.150390625 0.4252106193428018 25 -0.21469879150390625 2 Oxidation (M) _M(Oxidation (M))LYLSFIVVC_ REV__ENSG00000112893|ENST00000261483|MAN2A1 3.944395688203298 0.33680843299986807 2 S 1 -1 6.9897 0 0 0.58121 0 0 579.316744340446 533.2455538385374 1112.5622981789834 0 0 0 0 0 0.5 0 0 0 S 0.58121 + + 2 + NaN NaN 101940.5 NaN 22069 5451 27520 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27524 107.43 NaN 52583 35 0 10908 0.327 + -1 YNIKHFFMK 9 32 622.3169514370849 NaN 0 622.316650390625 PEAK HCD FTMS 0 0 0 27523 36283.31640625 0.8743025415265349 -1 0.00942230224609375 1 Oxidation (M) _YNIKHFFM(Oxidation (M))K_ REV__ENST00000367723.8_1_1:172579544-172579724:+|nuORF 10.823927491677226 0.2427956001690155 2 {I|L} 1 -1 16.237 0 0 1.3067 0 0 277.10892621225713 849.4037794668495 1126.5127056791066 0 0 0 0 0 0.9247425010840047 0 0 0 {I|L} 1.3067 + + 7 + NaN NaN 98779.6 NaN 22070 5452 27523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27525 107.43 NaN 72678 35 0 20283 0.261 + 23028 RCLPVPPKYE 10 28 601.3230897919487 1200.6316266506974 2 601.8242797851562 MULTI HCD FTMS 0 0 0 27523 35403.421875 0.42246125901647413 -18 0.1962127685546875 2 Unmodified _RCLPVPPKYE_ ENST00000268296.8_1_16:31373430-31374502:+|nuORF 1.3295316138638542 0.46826628246186464 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115242.8 NaN 22071 5452 27523 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27527 107.44 NaN 336820 35 0 123150 0.327 -1 MQKIKKKYLRK 11 67 502.6502706929465 1504.9289826790396 3 502.650146484375 MULTI HCD FTMS 0 0 0 27526 149247 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MQKIKKKYLRK_ ENST00000543809.5_1_12:28605516-28605582:+|nuORF 0.08335046087909445 0.4185551196980541 2 A 1 -1 0.71334 0 0 0.0474 0 0 826.5251873682959 604.3531588190061 1430.878346187302 0 0 0 0 0 0 0 0 0 A 0.0474 - 2 + NaN NaN 138782 NaN 22072 5453 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27528 107.44 NaN 75219 35 0 6343 0.261 + 8233 GSASVAALLIL 11 38 507.81532088147964 NaN 0 507.8153076171875 PEAK HCD FTMS 0 0 0 27526 17802.458984375 0.27766489925071053 1 -0.01924896240234375 2 Unmodified _GSASVAALLIL_ REV__ENSG00000142235|ENST00000600059|LMTK3 2.9952420565917617 0.33362350433860827 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100701.2 NaN 22073 5453 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27529 107.44 NaN 129550 35 0 18256 0.261 -1 LPEPAFLCLL 10 29 586.8239272916801 NaN 0 586.8245849609375 PEAK HCD FTMS 0 0 0 27526 18212.638671875 0.29356302609897983 1 -0.01924896240234375 3 Carbamidomethyl (C) _LPEPAFLC(Carbamidomethyl (C))LL_ ENSG00000105219|ENST00000430325|CCNP 6.723162845929126 0.3344301934401713 2 {I|L} 1 -1 11.99 0 0 1.0233 0 0 131.0987181957267 924.4286849171298 1055.5274031128565 0 0 0 0 0 0.5 0 0 0 {I|L} 1.0233 + + 1 + NaN NaN 128402.8 NaN 22074 5453 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27530 107.45 NaN 50577 35 0 5319.3 0.261 + -1 EPCECHFS 8 32 533.1908672477413 NaN 0 533.3208618164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 2 Carbamidomethyl (C) _EPC(Carbamidomethyl (C))EC(Carbamidomethyl (C))HFS_ REV__ENSG00000138829|ENST00000262464|FBN2;REV__nc|ENSG00000138829|P35556-2|FBN2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96194 NaN 22075 5453 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27531 107.45 NaN 59641 35 0 9004.2 0.261 + 19261 NLLLLACVLF 10 36 559.8345336914062 NaN 0 559.8345336914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _NLLLLACVLF_ REV__ENSG00000117425|ENST00000372192|PTCH2;REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2 7.289230182591677 0.3339457182549222 2 VK 2 -1 9.6927 0 0 0.86724 0 0 740.4237779767594 147.04976831607658 887.473546292836 0 0 0 0 0 0.5 0 0 0 VK 0.86724 - 6 + NaN NaN 91784.3 NaN 22076 5453 27526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27534 107.46 NaN 126470 35 0 23094 0.411 + 3556 EITGEVHMP 9 48 506.7427155766238 1011.4708782200477 2 506.7425842285156 MULTI HCD FTMS 0 0 0 27533 20671.34375 0.8570346954926218 -3 0.03571319580078125 1 Unmodified _EITGEVHMP_ ENSG00000136068|ENST00000295956|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-9|FLNB 2.0597508629832335 0.3354026079994024 2 E 1 8 2.4743 0 0 0.24462 0 0 457.6544852530539 421.76325403385005 879.417739286904 0 0 0 0 0 0 0 0 0 + E 0.24462 + + 3 + NaN NaN 123429.8 NaN 22077 5455 27533 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27538 107.48 NaN 418820 35 0 39354 0.327 + 16691 LWTLLILKWFR 11 90 496.9747056658839 1487.9022875978517 3 497.30902099609375 MULTI HCD FTMS 0 0 0 27537 109579.2734375 0.4823752602206013 5 -0.04625701904296875 1 Unmodified _LWTLLILKWFR_ REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF 0.40826533853263924 0.41713015341995335 2 R 1 -1 7.7642 0 0 0.52182 0 0 853.5232788333358 475.25995813541255 1328.7832369687483 0 0 0 0 0 0.5 0 0 0 R 0.52182 + + 31 + NaN NaN 151554.1 NaN 22078 5458 27537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27539 107.49 NaN 154720 35 0 19034 0.261 + 421 AKRTYFTVF 9 40 566.8120551484767 NaN 0 566.799560546875 PEAK HCD FTMS 0 0 0 27537 15027.58203125 0.5992785716366432 -3 0.02043914794921875 2 Unmodified _AKRTYFTVF_ REV__ENSG00000048740|ENST00000633077|CELF2;REV__ENSG00000149187|ENST00000687097|CELF1;REV__nc|ENSG00000048740|O95319-2|CELF2;REV__nc|ENSG00000048740|O95319-3|CELF2;REV__nc|ENSG00000048740|O95319-4|CELF2;REV__nc|ENSG00000048740|O95319-5|CELF2;REV__nc|ENSG00000048740|O95319|CELF2;REV__nc|ENSG00000149187|Q92879-2|CELF1;REV__nc|ENSG00000149187|Q92879-3|CELF1;REV__nc|ENSG00000149187|Q92879-4|CELF1;REV__nc|ENSG00000149187|Q92879-5|CELF1;REV__nc|ENSG00000149187|Q92879-6|CELF1;REV__nc|ENSG00000149187|Q92879|CELF1 4.75600775471527 0.27219989241163056 2 V{M(Oxidation (M))|F} 2 -1 8.5835 0 0 0.75852 0 0 166.11008762178545 716.3433931940061 882.4534808157916 0 0 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 0.75852 + + 15 + NaN NaN 123135.8 NaN 22079 5458 27537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27540 107.49 NaN 140260 35 0 29629 0.261 + -1 FIMYIKGASR 10 34 601.3230897919487 1200.6316266506974 2 601.82421875 MULTI HCD FTMS 0 0 0 27537 17757.37109375 0.21189480993038529 -12 0.1077117919921875 3 Oxidation (M) _FIM(Oxidation (M))YIKGASR_ REV__ENSG00000183873|ENST00000423572|SCN5A;REV__nc|ENSG00000183873|Q14524-3|SCN5A;REV__nc|ENSG00000183873|Q14524-4|SCN5A;REV__nc|ENSG00000183873|Q14524-5|SCN5A;REV__nc|ENSG00000183873|Q14524-6|SCN5A;REV__nc|ENSG00000183873|Q14524|SCN5A;REV__SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;REV__SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant 3.5964929083625545 0.45626689593999237 2 V{M(Oxidation (M))|F} 2 -1 17.959 0 0 1.4958 0 0 936.4822865216812 0 936.4822865216812 0 17.95880017344075 0 0 0 0 0 0 0 V{M(Oxidation (M))|F} 1.4958 - 2 NaN NaN 111304.2 NaN 22080 5458 27537 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27542 107.5 NaN 864540 35 0 561590 0.411 + 15635 LPEELFLLL 9 54 543.8259303626696 1085.6373077921392 2 543.8260498046875 MULTI HCD FTMS 0 0 0 27541 35049.17578125 0.02440406052123042 24 -0.1798248291015625 1 Unmodified _LPEELFLLL_ ENSG00000277150|ENST00000622749|F8A3 21.74664581756881 0.17247014374749275 2 {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4 5 45.433 0 0 4.1849 0 0 581.3055156582723 0 581.3055156582723 0 39.94850021680094 0 0 0 1.3494850021680094 0 0 0 + {M(Oxidation (M))|F}{I|L}{I|L}{I|L} 4.1849 + + 33 NaN NaN 357194.3 NaN 22081 5459 27541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27544 107.5 NaN 229450 35 0 31741 0.327 -1 0 45 405.1190141168658 808.2234753005316 2 405.1190185546875 MULTI HCD FTMS 0 0 0 27543 124411.3125 0.20410565321456142 -11 0.1022491455078125 1 NaN NaN 2 V 1 -1 1.1092 0 0 0.13724 0 0 422.05307842728786 284.0747164361938 706.1277948634817 0 0 0 0 0 0 0 0 0 V 0.13724 - 3 + NaN NaN 120134.4 NaN 22082 5460 27543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27545 107.51 NaN 136270 35 0 31893 0.261 -1 PHMLVVYS 8 42 481.2460827707066 NaN 0 481.2469787597656 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Oxidation (M) _PHM(Oxidation (M))LVVYS_ ENSG00000144645|ENST00000396556|OSBPL10;ENST00000463504.5_1_3:31921019-32010971:-|nuORF;ENST00000465626.1_1_3:31921129-32022434:-|nuORF;ENST00000466604.5_1_3:31863684-32001816:-|nuORF;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant 2.577480529830294 0.38822285293237185 2 T 1 -1 8.0989 0 0 0.84322 0 0 692.3693190064539 164.03838525943596 856.4077042658898 0 0 0 0 0 0.5 0 0 0 T 0.84322 - 1 + NaN NaN 120453.1 NaN 22083 5460 27543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27547 107.51 NaN 32620 35 0 5666.4 0.327 -1 0 25 560.0045191889449 1676.9917281670346 3 560.004150390625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91341.2 NaN 22084 5461 27546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27548 107.52 NaN 160640 35 0 89076 0.261 + 29892 VFDLIQELF 9 37 562.3048187725709 1122.5950846119417 2 562.3056640625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VFDLIQELF_ ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A 8.155526934196011 0.2891920862272901 2 Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 4 5 24.45 0 0 2.178 0 0 587.3322010724625 0 587.3322010724625 0 24.45046257204389 0 0 0 0.8252574989159953 0 0 0 + Q{[QN]|[E{I|L}]|[KN]}{M(Oxidation (M))|F} 2.178 + + 3 NaN NaN 119334.4 NaN 22085 5461 27546 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27551 107.53 NaN 483720 35 0 145760 0.327 -1 MRVRWLRF 8 48 590.3319082756213 1178.6492636180426 2 590.3322143554688 MULTI HCD FTMS 0 0 0 27550 64395.80078125 0.08432839215357607 -9 0.07386016845703125 1 Oxidation (M) _M(Oxidation (M))RVRWLRF_ ENST00000531894.5_1_16:70011782-70023933:-|nuORF 4.75600775471527 0.5349361699807423 2 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 6 -1 44.654 0 0 3.7885 0 0 387.1776600568375 0 387.1776600568375 0 30.713337517843655 0 0 0 1.9247425010840047 0 0 0 {I|L}{M(Oxidation (M))|F}[{I|L}P]R{M(Oxidation (M))|F} 3.7885 - 58 NaN NaN 166676.7 NaN 22086 5463 27550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27552 107.53 NaN 943810 35 0 116680 0.262 + 23379 RKRRRWNKKSG 11 77 491.29922053058846 1470.8758321919654 3 491.29937744140625 MULTI HCD FTMS 0 0 0 27550 253968.796875 0.7989243768622027 -4 0.03392791748046875 2 Unmodified _RKRRRWNKKSG_ REV__nc|ENSG00000137309|P17096-3|HMGA1 0.09484139111097674 0.41850472438158626 2 N 1 -1 8.4949 0 0 0.57754 0 0 1136.7000337073935 217.1079043024047 1353.8079380097981 0 0 0 0 0 0.5 0 0 0 N 0.57754 + + 8 + NaN NaN 240969.3 NaN 22087 5463 27550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27553 107.54 NaN 95166 35 0 11441 0.261 -1 KYVDIFCLL 9 42 585.8141127030844 NaN 0 585.8141479492188 PEAK HCD FTMS 0 0 0 27550 22180.205078125 0.31873613350544755 -10 0.093109130859375 3 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ ENSG00000205413|ENST00000379958|SAMD9 12.240655878213236 0.2359303321180293 2 {I|L} 1 -1 11.237 0 0 0.96076 0 0 131.096035304792 922.4096681934827 1053.5057034982747 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.96076 + + 7 + NaN NaN 114790 NaN 22088 5463 27550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27554 107.54 NaN 182680 35 0 27115 0.262 + 8203 GQRTLHSY 8 31 481.2460827707066 NaN 0 481.24554443359375 PEAK HCD FTMS 0 0 0 27550 34198.046875 0.3543522340619815 -9 0.07386016845703125 4 Unmodified _GQRTLHSY_ REV__ENSG00000143369|ENST00000369047|ECM1;REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF;REV__nc|ENSG00000143369|Q16610-2|ECM1;REV__nc|ENSG00000143369|Q16610-3|ECM1;REV__nc|ENSG00000143369|Q16610-4|ECM1 3.944395688203298 0.38822285293237185 2 T 1 -1 15.713 0 0 1.636 0 0 692.3655873029312 164.0399187984565 856.4055061013877 0 0 0 0 0 0.8494850021680094 0 0.5 0 T 1.636 + + 7 NaN NaN 115453.2 NaN 22089 5463 27550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27555 107.54 NaN 142300 35 0 38309 0.261 + 10327 ILPPFIWTL 9 52 550.3310295049553 1098.6475060767104 2 550.3312377929688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _ILPPFIWTL_ ENSG00000132196|ENST00000254521|HSD17B7;ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7 13.50788311687929 0.24365122550260465 2 {I|L}W[{I|L}T] 4 5 13.672 0 0 1.2445 0 0 567.3432484357437 0 567.3432484357437 0 10.573193899842437 0 0 0 0.5 0 0 0 + {I|L}W[{I|L}T] 1.2445 + + 8 NaN NaN 111380 NaN 22090 5463 27550 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27562 107.58 NaN 176930 35 0 13001 0.411 + 23633 RPRRFYQML 9 61 422.9015450352487 NaN 0 422.9015808105469 PEAK HCD FTMS 0 0 0 27561 17454.30078125 0.2872233925508476 5 -0.0370025634765625 1 Unmodified _RPRRFYQML_ ENST00000423894.5_1_3:28283112-28361002:+|nuORF 1.0714618166137932 0.2900546878344058 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 147963.1 NaN 22091 5469 27561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27565 107.59 NaN 370780 35 0 89431 0.411 + 14957 LLGSILHDKKK 11 46 626.3938899849204 1250.7732270366407 2 626.394775390625 MULTI HCD FTMS 0 0 0 27564 107824.578125 0.004082550270371334 -6 0.03902435302734375 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 1.3295316138638542 0.4130897924953357 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3984493322439 444.3111776837386 1116.7096270159825 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 3 + NaN NaN 200376.3 NaN 22092 5471 27564 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27567 107.6 NaN 196590 35 0 20860 0.327 + 23227 RFWKLILLTWL 11 71 496.9747056658839 1487.9022875978517 3 496.9749755859375 MULTI HCD FTMS 0 0 0 27566 128338.046875 0.43168041195935064 18 -0.1162872314453125 1 Unmodified _RFWKLILLTWL_ ENST00000465952.5_1_13:31205167-31205455:+|nuORF 0.09484139111097674 0.41850472438158626 2 R 1 10 11.237 0 0 0.75523 0 0 853.5243054815406 475.26239954166255 1328.7867050232032 0 0 0 0 0 0.4247425010840047 0 0 0 + R 0.75523 + + 11 + NaN NaN 112566.1 NaN 22093 5472 27566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27568 107.61 NaN 67545 35 0 11216 0.261 + 9952 IEDEAVIASLL 11 26 586.82275390625 NaN 0 586.82275390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IEDEAVIASLL_ ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 5.296884461304476 0.3270944076746277 2 {I|L} 1 10 11.99 0 0 1.0233 0 0 131.09722736422515 924.4294397874615 1055.5266671516868 0 0 0 0 0 0.5 0 0 0 + {I|L} 1.0233 + + 1 + NaN NaN 101226.2 NaN 22094 5472 27566 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27570 107.61 NaN 154450 35 0 24798 0.411 + -1 FKKQSKLYC 9 47 601.3230897919487 1200.6316266506974 2 601.3233032226562 MULTI HCD FTMS 0 0 0 27569 32504.197265625 0.3797954508753748 1 -0.00725555419921875 1 Carbamidomethyl (C) _FKKQSKLYC(Carbamidomethyl (C))_ REV__ENST00000486741.5_1_21:40719415-40719475:-|nuORF 6.723162845929126 0.3000504726104499 2 {M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E 5 -1 22.531 0 0 1.8766 0 0 536.2717152326187 0 536.2717152326187 0 18.551434250963936 0 0 0 0 0 0.3807196863200844 0 {M(Oxidation (M))|F}{I|L}{[C(Carbamidomethyl (C))P]|[EQ]|[WA]|[EK]|[RT]}E 1.8766 - 22 NaN NaN 143690.5 NaN 22095 5473 27569 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27572 107.62 NaN 4077800 35 0 734810 0.411 + 16011 LPRITIKLFAP 11 60 634.9083033803901 1267.80205382758 2 634.9075927734375 MULTI HCD FTMS 0 0 0 27571 1010860.4375 0.10722327907538923 -3 0.02330780029296875 1 Unmodified _LPRITIKLFAP_ VPS13B|p.K1332R|1|0.36|ENSG00000132549|chr8:99501811-99501811|A/G|missense_variant 2.9952420565917617 0.40578455234410343 2 S 1 11 4.2082 0 0 0.33193 0 0 669.4139300317023 508.3234957330688 1177.7374257647712 0 0 0 0 0 0 0 0.3494850021680094 0 S 0.33193 - 7 + NaN NaN 1316760 NaN 22096 5474 27571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27574 107.62 NaN 29017000 35 0 3879200 0.327 + 21257 PRKKSPNELVD 11 101 641.8588613798954 1281.7031698265907 2 641.85888671875 MULTI HCD FTMS 0 0 0 27573 27746354 0.5845222357460639 -1 0.00719451904296875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 2 KP 2 9 13.443 0 0 1.0489 0 0 1038.5477360034633 0 1038.5477360034633 0 3.8392564687191566 0 0 0 0 0 0 0 KP 1.0489 - 181 NaN NaN 3051130.8 NaN 22097 5475 27573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27580 107.66 NaN 2490800 35 0 630140 0.327 + 14958 LLGSILHDKKK 11 45 626.3938899849204 1250.7732270366407 2 626.3927612304688 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 1.3295316138638542 0.4130897924953357 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3984970288951 444.311272139226 1116.709769168121 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 4 + NaN NaN 515470.9 NaN 22098 5480 27579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27596 107.75 NaN 6682500 35 0 859420 0.327 + 21258 PRKKSPNELVD 11 84 641.8576360011776 1281.7007190691552 2 641.8585815429688 MULTI HCD FTMS 0 0 0 27595 1614718.75 0.13893534019016204 -8 0.0487823486328125 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 2 KP 2 9 12.474 0 0 0.97326 0 0 1038.5453959202616 0 1038.5453959202616 0 2.870156338638594 0 0 0 0 0 0 0 KP 0.97326 - 53 NaN NaN 1346862.9 NaN 22099 5495 27595 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27601 107.77 NaN 4037000 35 0 1136500 0.327 + 12306 KLSLQLPSLPR 11 52 626.3930672678212 1250.7715816024422 2 626.3928833007812 MULTI HCD FTMS 0 0 0 27600 4991324.5 0.5073914638130709 1 -0.00601959228515625 1 Unmodified _KLSLQLPSLPR_ REV__ENST00000482818.1_1_22:29724812-29725148:-|nuORF 2.498486711656943 0.4079631525365919 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3965862064454 444.31120867444946 1116.7077948808949 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 5 + NaN NaN 333390.7 NaN 22100 5499 27600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27605 107.79 NaN 1603000 35 0 999820 0.411 -1 0 85 528.4087984209789 NaN 0 528.41015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 Y 1 -1 2.4743 0 0 0.23457 0 0 619.4989495257483 269.21186243228755 888.710811958036 0 0 0 0 0 0 0 0 0 Y 0.23457 - 9 + NaN NaN 563038.8 NaN 22101 5502 27604 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27608 107.81 NaN 3319600 35 0 615600 0.327 + 14583 LFLFLWFILG 10 53 634.8757242848509 NaN 0 634.8792114257812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LFLFLWFILG_ ENSG00000281106|ENST00000629372|TMEM272;nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272 1.844237919475145 0.33860587697544825 2 G 1 9 2.4743 0 0 0.19517 0 0 631.3590290858618 576.3399752252561 1207.699004311118 0 0 0 0 0 0 0 0 0 + G 0.19517 + + 5 + NaN NaN 608918.6 NaN 22102 5504 27607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27609 107.81 NaN 7269900 35 0 1844900 0.261 + 14959 LLGSILHDKKK 11 61 626.3917335775873 1250.7689142219745 2 626.8904418945312 MULTI HCD FTMS 0 0 0 27607 3826739.75 0.2746957073346373 -3 0.02021026611328125 2 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3939150486954 444.3114493623697 1116.7053644110651 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 12 + NaN NaN 1186634.4 NaN 22103 5504 27607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27611 107.82 NaN 6742300 35 0 797160 0.327 + 21259 PRKKSPNELVD 11 81 641.8576360011776 1281.7007190691552 2 641.8564453125 MULTI HCD FTMS 0 0 0 27610 5404251 0.4649982860222707 1 -0.00911712646484375 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 10.799506525563784 0.36298595732910816 2 M 1 11 9.6041 0 0 0.74932 0 0 703.3256670149732 444.3113605517694 1147.6370275667425 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 80 + NaN NaN 1107070.1 NaN 22104 5505 27610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27612 107.82 NaN 3935200 35 0 986410 0.261 + 14654 LGIQPVIDKLR 11 60 626.3917335775873 1250.7689142219745 2 626.3912353515625 MULTI HCD FTMS 0 0 0 27610 9188309 0.7504918913581086 -2 0.01604461669921875 2 Unmodified _LGIQPVIDKLR_ DAAM1|p.F380Sfs*26|1|0.12|ENSG00000100592|chr14:59326040-59326040|T/-|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;ENSG00000146122|ENST00000274867|DAAM2;ENST00000556894.1_1_14:59791074-59792827:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;nc|ENSG00000146122|Q86T65-4|DAAM2 3.2813086475875832 0.40452996145431686 2 M 1 11 10.485 0 0 0.83825 0 0 672.3940115463998 444.3112806007986 1116.7052921471984 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 8 + NaN NaN 687346.1 NaN 22105 5505 27610 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27614 107.83 NaN 2668000 35 0 1120200 0.326 + 14880 LKLLISKLKAH 11 39 632.4266967773438 NaN 0 632.4266967773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LKLLISKLKAH_ ENSG00000065325|ENST00000262441|GLP2R 0.3070304955306653 0.3412491863730806 2 M 1 11 3.9794 0 0 0.31512 0 0 667.46525908479 461.3088472955688 1128.7741063803587 0 0 0 0 0 0 0 0 0 M 0.31512 - 12 + NaN NaN 244679.9 NaN 22106 5506 27613 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27617 107.84 NaN 3184700 35 0 522010 0.411 + 14895 LKQQRKLLEI 10 66 634.9058453671835 NaN 0 634.906494140625 PEAK HCD FTMS 0 0 0 27616 1314765.875 0.21003651292318012 1 -0.00676727294921875 1 Unmodified _LKQQRKLLEI_ REV__ENSG00000065809|ENST00000181796|FAM107B;REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF;REV__nc|ENSG00000065809|Q9H098|FAM107B 1.4819007175156935 0.33891598740166873 2 T 1 -1 4.6041 0 0 0.36316 0 0 755.4386916115169 408.2904042718267 1163.7290958833437 0 0 0 0 0 0 0 0 0 T 0.36316 - 22 + NaN NaN 1051405.6 NaN 22107 5508 27616 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27624 107.88 NaN 237120 35 0 33376 0.327 + 30908 VQVLLLLLRI 10 54 590.4132080078125 NaN 0 590.4132080078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VQVLLLLLRI_ ENST00000332674.9_2_10:112045956-112046085:+|nuORF 0.4007161486938917 0.3398413315442166 2 {M(Oxidation (M))|F} 1 10 3.9794 0 0 0.33758 0 0 607.5188915998061 421.2432955377563 1028.7621871375625 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33758 - 5 + NaN NaN 154268.5 NaN 22108 5514 27623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27625 107.88 NaN 825880 35 0 231370 0.261 + 20920 PKTKKREEIL 10 48 621.3836669921875 NaN 0 621.3836669921875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PKTKKREEIL_ A1CF|p.R418Kfs*7|1|0.16|ENSG00000148584|chr10:50813951-50813952|-/T|frameshift_variant;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF 5.731851221503515 0.33527861879838866 2 ND 2 10 3.9794 0 0 0.32072 0 0 562.3525917951187 446.3173887696459 1008.6699805647645 0 0 0 0 0 0 0 0 0 ND 0.32072 - 9 + NaN NaN 232198.1 NaN 22109 5514 27623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27627 107.88 NaN 6189800 35 0 765800 0.327 + 21260 PRKKSPNELVD 11 65 641.8576360011776 1281.7007190691552 2 641.8582153320312 MULTI HCD FTMS 0 0 0 27626 1781608.625 0.15329505550121458 11 -0.0845184326171875 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3877749288398915 2 VW 2 10 10.969 0 0 0.85582 0 0 348.2690611005598 645.2814425104124 993.5505036109721 0 0 0 0 0 0.5 0 0 0 VW 0.85582 - 68 + NaN NaN 769226.5 NaN 22110 5515 27626 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27629 107.89 NaN 4245600 35 0 1388000 0.327 + 20960 PLFKIGHKRR 10 44 626.3942341587588 1250.7739153843174 2 626.3935546875 MULTI HCD FTMS 0 0 0 27628 7509975.5 0.6423722156259818 -2 0.016082763671875 1 Unmodified _PLFKIGHKRR_ ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4 1.6526216038709556 0.46655611578153744 2 M 1 10 10.485 0 0 0.83825 0 0 672.3991766869681 444.3111962432578 1116.710372930226 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 6 + NaN NaN 420611.8 NaN 22111 5516 27628 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27632 107.91 NaN 4658400 35 0 1171400 0.327 + 14881 LKLLISKLKAH 11 63 632.4296377267896 NaN 0 632.429931640625 PEAK HCD FTMS 0 0 0 27631 2999274.75 0.6731130015946537 1 -0.0084686279296875 1 Unmodified _LKLLISKLKAH_ ENSG00000065325|ENST00000262441|GLP2R 0.3070304955306653 0.3412491863730806 2 A 1 10 6.9897 0 0 0.55349 0 0 968.7200092587067 220.06467615299064 1188.7846854116974 0 0 0 0 0 0 0 0 0 + A 0.55349 + + 32 + NaN NaN 798557.4 NaN 22112 5518 27631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27633 107.91 NaN 4961200 35 0 629860 0.248 + 35183 YVKKVTSTVFN 11 75 643.3612149954114 1284.7078770576227 2 643.3628540039062 MULTI HCD FTMS 0 0 0 27631 5382211.5 0.7181913098663559 -7 0.0475616455078125 2 Unmodified _YVKKVTSTVFN_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 2.9952420565917617 0.40578455234410343 2 M 1 -1 9.6041 0 0 0.74757 0 0 706.3334762293033 444.31128719288415 1150.6447634221875 0 0 0 0 0 0.5 0 0 0 M 0.74757 - 14 + NaN NaN 778717.4 NaN 22113 5518 27631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27637 107.93 NaN 221070 35 0 49512 0.411 + 16562 LTWMGKMRL 9 72 568.3081665039062 NaN 0 568.3081665039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LTWMGKMRL_ REV__ENST00000419165.5_1_X:103216937-103217189:+|nuORF 4.3292370932331545 0.2742679634796037 2 T 1 -1 5.4846 0 0 0.48339 0 0 585.231620012087 445.31427942447505 1030.545899436562 0 0 0 0 0 0 0 0 0 T 0.48339 + + 4 + NaN NaN 179354.9 NaN 22114 5521 27636 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27640 107.94 NaN 8225100 35 0 992100 0.327 -1 PIKKEKSCHR 10 89 641.8566503670402 1281.6987478008803 2 641.8560791015625 MULTI HCD FTMS 0 0 0 27639 4552233.5 0.6417903651088094 -2 0.013702392578125 1 Carbamidomethyl (C) _PIKKEKSC(Carbamidomethyl (C))HR_ ENSG00000158553|ENST00000444565|POM121L2 5.731851221503515 0.44496410492002586 2 KP 2 -1 11.594 0 0 0.90456 0 0 1038.5436438928034 0 1038.5436438928034 0 1.9897000433601875 0 0 0 0 0 0 0 KP 0.90456 - 36 NaN NaN 1349537.9 NaN 22115 5523 27639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27641 107.95 NaN 6927100 35 0 1089600 0.261 + 28076 TGVILLRLDRL 11 76 634.9054801823116 1267.7964074314232 2 634.9054565429688 MULTI HCD FTMS 0 0 0 27639 3845368.75 0.9088652186408934 -2 0.013702392578125 2 Unmodified _TGVILLRLDRL_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF 5.731851221503515 0.39378271418728467 2 M 1 11 4.6041 0 0 0.36316 0 0 689.4216434603519 444.31143442604167 1133.7330778863936 0 0 0 0 0 0 0 0 0 M 0.36316 - 21 + NaN NaN 1160213.6 NaN 22116 5523 27639 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27643 107.95 NaN 6126600 35 0 1754200 0.327 + 12097 KKKDHLISGLL 11 55 626.391472563055 1250.76839219291 2 626.391357421875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 11 10.485 0 0 0.83825 0 0 672.3934146956535 444.31135478802867 1116.7047694836822 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 6 + NaN NaN 1034426.4 NaN 22117 5524 27642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27644 107.95 NaN 9393300 35 0 1307300 0.261 + 10313 ILKIEYIHQE 10 88 643.3612149954114 1284.7078770576227 2 643.3604736328125 MULTI HCD FTMS 0 0 0 27642 5358716.5 0.7150561850528271 -1 0.0087738037109375 2 Unmodified _ILKIEYIHQE_ ENSG00000164002|ENST00000415550|EXO5;EXO5|p.D288N|1|0.15|ENSG00000164002|chr1:40515406-40515406|G/A|missense_variant 4.897010918128616 0.4493830473644964 2 M 1 10 8.9794 0 0 0.69894 0 0 706.332845538599 444.3116477060647 1150.6444932446639 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 44 + NaN NaN 1511483 NaN 22118 5524 27642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27645 107.96 NaN 3435800 35 0 2123700 0.261 + 23981 RVRPRLRLVV 10 55 632.426994030727 1262.8394351282539 2 632.4259033203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RVRPRLRLVV_ REV__ENSG00000225556|ENST00000694868|C2CD4D 0.4007161486938917 0.47318265037741464 2 W 1 -1 2.4743 0 0 0.19593 0 0 666.4579254545557 407.2826110973569 1073.7405365519126 0 0 0 0 0 0 0 0 0 W 0.19593 - 3 + NaN NaN 611337.5 NaN 22119 5524 27642 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27650 107.98 NaN 5224200 35 0 888900 0.327 + 28077 TGVILLRLDRL 11 81 634.9054801823116 1267.7964074314232 2 634.905517578125 MULTI HCD FTMS 0 0 0 27649 1657179.75 0.39167974093798186 1 -0.00603485107421875 1 Unmodified _TGVILLRLDRL_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF 5.731851221503515 0.39378271418728467 2 M 1 11 4.6041 0 0 0.36316 0 0 689.4221913690394 444.31154785997893 1133.7337392290183 0 0 0 0 0 0 0 0 0 M 0.36316 - 16 + NaN NaN 1164305 NaN 22120 5528 27649 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27654 108 NaN 1620800 35 0 333860 0.326 -1 0 140 437.32984997427343 NaN 0 437.3300476074219 PEAK HCD FTMS 0 0 0 27653 578071.4375 0.2817115700677023 1 -0.00609588623046875 1 NaN NaN 2 V 1 -1 8.4949 0 0 0.97346 0 0 479.3427150619153 291.2108887739145 770.5536038358298 0 0 0 0 0 0.5 0 0 0 V 0.97346 - 16 + NaN NaN 423872.8 NaN 22121 5531 27653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27658 108.02 NaN 848360 35 0 356570 0.327 -1 0 70 511.3822959735994 NaN 0 511.3815002441406 PEAK HCD FTMS 0 0 0 27657 2725680.75 0.43616663356895385 10 -0.06268310546875 1 NaN NaN 2 R 1 -1 1.2591 0 0 0.12335 0 0 650.5305369395663 211.0973299615844 861.6278669011507 0 0 0 0 0 0 0 0 0 R 0.12335 - 5 + NaN NaN 250190.9 NaN 22122 5534 27657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27664 108.05 NaN 2366300 35 0 875620 0.411 -1 0 61 631.396002907329 630.388726440729 1 632.4280395507812 MULTI HCD FTMS 0 0 0 27663 1975422.875 0.9509397847003677 -1 0.00617218017578125 1 NaN NaN 2 AM 2 -1 11.682 0 0 1.8532 0 0 0 425.2883394830688 425.2883394830688 4.692737604564032 0 0 0 0 0 0 0 0 AM 1.8532 - 15 + NaN NaN 804550.4 NaN 22123 5539 27663 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27667 108.06 NaN 3639700 35 0 490160 0.327 + 22194 QLLIIKKRQE 10 76 634.9061802543378 1267.7978075754754 2 634.9061889648438 MULTI HCD FTMS 0 0 0 27666 1578635.625 0.5603965303483585 -11 0.06871795654296875 1 Unmodified _QLLIIKKRQE_ REV__ENSG00000066933|ENST00000356056|MYO9A;REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF;REV__MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;REV__nc|ENSG00000066933|B2RTY4-2|MYO9A;REV__nc|ENSG00000066933|B2RTY4-4|MYO9A;REV__nc|ENSG00000066933|B2RTY4-5|MYO9A 1.4819007175156935 0.4674597685733628 2 T 1 -1 4.6041 0 0 0.36316 0 0 755.4372251553567 408.2910800923682 1163.7283052477248 0 0 0 0 0 0 0 0 0 T 0.36316 - 10 + NaN NaN 843740.6 NaN 22124 5541 27666 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27669 108.07 NaN 3417800 35 0 827000 0.327 + 20964 PLGLDLKNLRL 11 63 626.3918696065823 1250.7691862799645 2 626.3920288085938 MULTI HCD FTMS 0 0 0 27668 3632767 0.631514727770664 -6 0.03803253173828125 1 Unmodified _PLGLDLKNLRL_ ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2;nc|ENSG00000064607|Q8IX01-4|SUGP2;SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant 3.2813086475875832 0.40452996145431686 2 M 1 11 10.485 0 0 0.83825 0 0 672.3942502900868 444.3111530638044 1116.7054033538911 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 19 + NaN NaN 685870.4 NaN 22125 5542 27668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27671 108.07 NaN 5724600 35 0 1252000 0.327 + 14960 LLGSILHDKKK 11 62 626.3918696065823 1250.7691862799645 2 626.8950805664062 MULTI HCD FTMS 0 0 0 27670 2667888.75 0.64845018076181 -5 0.03197479248046875 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3941695102645 444.31129224194495 1116.7054617522094 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 9 + NaN NaN 650582.1 NaN 22126 5543 27670 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27677 108.11 NaN 6526100 35 0 861520 0.327 + 14892 LKQQRKLLEI 10 72 634.9061802543378 1267.7978075754754 2 634.9067993164062 MULTI HCD FTMS 0 0 0 27676 1670097.625 0.5928644327870366 -4 0.0246429443359375 1 Unmodified _LKQQRKLLEI_ REV__ENSG00000065809|ENST00000181796|FAM107B;REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF;REV__nc|ENSG00000065809|Q9H098|FAM107B 1.4819007175156935 0.4674597685733628 2 T 1 -1 4.6041 0 0 0.36316 0 0 755.4378965420755 408.29203868258486 1163.7299352246603 0 0 0 0 0 0 0 0 0 T 0.36316 - 26 + NaN NaN 841404.4 NaN 22127 5548 27676 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27680 108.12 NaN 8787000 35 0 1115100 0.327 + 19088 NEWKQLLIEL 10 70 643.3616303455345 1284.708707757869 2 643.36083984375 MULTI HCD FTMS 0 0 0 27679 1607655.5 0.40092159405471456 2 -0.01270294189453125 1 Unmodified _NEWKQLLIEL_ REV__CON__P02754 3.5964929083625545 0.45626689593999237 2 M 1 -1 8.9794 0 0 0.69894 0 0 706.3339450242628 444.311404424349 1150.6453494486118 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 8 + NaN NaN 784017.3 NaN 22128 5550 27679 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27682 108.12 NaN 9853200 35 0 1205500 0.327 -1 PIKKEKSCHR 10 90 641.8574531570789 1281.7003533809577 2 641.8568115234375 MULTI HCD FTMS 0 0 0 27681 2496882.5 0.3261996927281611 -4 0.02449798583984375 1 Carbamidomethyl (C) _PIKKEKSC(Carbamidomethyl (C))HR_ ENSG00000158553|ENST00000444565|POM121L2 5.731851221503515 0.44496410492002586 2 M 1 -1 9.6041 0 0 0.74932 0 0 703.3251464958032 444.31151681733786 1147.636663313141 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 41 + NaN NaN 1611062.9 NaN 22129 5551 27681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27684 108.13 NaN 1787300 35 0 1073800 0.411 + 28201 TKSSHLKA 8 92 436.2532700578776 870.4919871825552 2 436.2532653808594 MULTI HCD FTMS 0 0 0 27683 558782.125 0.20862419645799815 -4 0.02490997314453125 1 Unmodified _TKSSHLKA_ ENSG00000067082|ENST00000497571|KLF6;ENSG00000102349|ENST00000468660|KLF8;ENSG00000102554|ENST00000377687|KLF5;ENSG00000105610|ENST00000264834|KLF1;ENSG00000109787|ENST00000261438|KLF3;ENSG00000118263|ENST00000309446|KLF7;ENSG00000118922|ENST00000703967|KLF12;ENSG00000127528|ENST00000248071|KLF2;ENSG00000136826|ENST00000374672|KLF4;ENSG00000163884|ENST00000296233|KLF15;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;nc|ENSG00000067082|Q99612-2|KLF6;nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;nc|ENSG00000136826|O43474-4|KLF4;nc|ENSG00000136826|O43474|KLF4;PIBF1-KLF5|1|fusion 2.577480529830294 0.5381683276125971 2 C(Carbamidomethyl (C)) 1 8 1.1092 0 0 0.12743 0 0 545.342220192124 162.0921572320922 707.4343774242162 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.12743 - 46 + NaN NaN 635191.1 NaN 22130 5552 27683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27690 108.16 NaN 3656900 35 0 998350 0.327 + 14961 LLGSILHDKKK 11 61 626.3932069650476 1250.7718609968952 2 626.3903198242188 MULTI HCD FTMS 0 0 0 27689 1319170.625 0.234775095773269 -12 0.0763397216796875 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3970358650967 444.31134214363334 1116.70837800873 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 15 + NaN NaN 652662.3 NaN 22131 5557 27689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27691 108.17 NaN 4285100 35 0 917820 0.255 + 20870 PIKKTTMHRR 10 70 634.375523168884 1266.736493404568 2 634.875732421875 MULTI HCD FTMS 0 0 0 27689 888216.0625 0.6972030746790324 -1 0.00670623779296875 2 Unmodified _PIKKTTMHRR_ REV__ENSG00000172059|ENST00000305883|KLF11;REV__nc|ENSG00000172059|O14901-2|KLF11 3.5964929083625545 0.45626689593999237 2 M 1 -1 8.9794 0 0 0.70886 0 0 688.3633931003078 444.3114220285116 1132.6748151288193 0 0 0 0 0 0.5 0 0 0 M 0.70886 + + 24 + NaN NaN 717236.8 NaN 22132 5557 27689 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27693 108.17 NaN 3376500 35 0 1322400 0.325 -1 0 139 428.2643920910395 854.514231248879 2 428.2642822265625 MULTI HCD FTMS 0 0 0 27692 1646965.75 1 0 0 1 NaN NaN 2 K 1 -1 10.837 0 0 1.2683 0 0 708.4051136725103 0 708.4051136725103 0 2.664895360923314 0 0 0 0 0 0 0 K 1.2683 - 56 + NaN NaN 597489.6 NaN 22133 5558 27692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27694 108.18 NaN 1847600 35 0 725380 0.261 + 14878 LKLLISKLKAH 11 45 632.4277392906909 1262.8409256481816 2 632.427490234375 MULTI HCD FTMS 0 0 0 27692 762004.625 0.4077715187637641 -10 0.0669708251953125 2 Unmodified _LKLLISKLKAH_ ENSG00000065325|ENST00000262441|GLP2R 0.3070304955306653 0.41757413505135293 2 A 1 10 5.4846 0 0 0.4343 0 0 968.7174037749379 220.06366907291252 1188.7810728478505 0 0 0 0 0 0 0 0 0 + A 0.4343 + + 22 + NaN NaN 371696.9 NaN 22134 5558 27692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27695 108.18 NaN 978460 35 0 451080 0.261 + 11985 KFWKKIEE 8 69 554.3151695626477 1106.6157861920954 2 554.3140258789062 MULTI HCD FTMS 0 0 0 27692 213763.53125 0.17366039639995337 2 -0.01944732666015625 3 Unmodified _KFWKKIEE_ ENSG00000113593|ENST00000261308|PPWD1 4.75600775471527 0.5349361699807423 2 R 1 8 4.5205 0 0 0.4085 0 0 736.3956626390965 211.0967959039672 947.4924585430637 0 0 0 0 0 0.3807196863200844 0 0 0 R 0.4085 - 28 + NaN NaN 241663.3 NaN 22135 5558 27692 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27697 108.19 NaN 3682400 35 0 720570 0.35 + 17420 LYRGYIVAIIS 11 85 634.375523168884 1266.736493404568 2 634.3765258789062 MULTI HCD FTMS 0 0 0 27696 1679238.625 0.8495813440437551 -1 0.01239776611328125 1 Unmodified _LYRGYIVAIIS_ REV__ENSG00000135776|ENST00000344517|ABCB10 2.9952420565917617 0.40578455234410343 2 M 1 -1 8.0989 0 0 0.63936 0 0 688.3629642459222 444.311452634882 1132.674416880804 0 0 0 0 0 0.5 0 0 0 M 0.63936 - 23 + NaN NaN 965160.3 NaN 22136 5559 27696 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27699 108.19 NaN 4183000 35 0 815920 0.327 + 12098 KKKDHLISGLL 11 68 626.3932069650476 1250.7718609968952 2 626.39208984375 MULTI HCD FTMS 0 0 0 27698 3211724.25 0.5715961636055082 -9 0.06807708740234375 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 11 10.485 0 0 0.83825 0 0 672.3968394843245 444.31125685643644 1116.708096340761 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 6 + NaN NaN 845495.5 NaN 22137 5560 27698 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27704 108.22 NaN 6366800 35 0 666940 0.327 + -1 PMNPLPRSKAR 11 85 641.8574531570789 1281.7003533809577 2 642.3595581054688 MULTI HCD FTMS 0 0 0 27703 442749.59375 0.0722088589954177 9 -0.0610809326171875 1 Oxidation (M) _PM(Oxidation (M))NPLPRSKAR_ REV__ENSG00000099991|ENST00000263119|CABIN1;REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1 5.296884461304476 0.39569033063702824 2 M 1 -1 9.6041 0 0 0.74932 0 0 703.3250641433367 444.3116538336485 1147.6367179769852 0 0 0 0 0 0.5 0 0 0 M 0.74932 + + 57 + NaN NaN 1295192.8 NaN 22138 5564 27703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27708 108.24 NaN 5236100 35 0 610140 0.327 + 12499 KRKVSDVKVPL 11 95 634.9074709541537 NaN 0 634.9060668945312 PEAK HCD FTMS 0 0 0 27707 1352763.875 0.4242220297784974 -5 0.03246307373046875 1 Unmodified _KRKVSDVKVPL_ ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1 2.735195868890462 0.3343611804837492 2 Q 1 11 5.4846 0 0 0.4326 0 0 320.35396622486434 816.3815889402779 1136.7355551651422 0 0 0 0 0 0 0 0 0 Q 0.4326 - 12 + NaN NaN 892764.5 NaN 22139 5567 27707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27709 108.24 NaN 2423700 35 0 371880 0.264 -1 0 172 437.3312543868826 NaN 0 437.3314208984375 PEAK HCD FTMS 0 0 0 27707 559751 0.32254035150497073 -5 0.03246307373046875 2 NaN NaN 2 V 1 -1 7.2185 0 0 0.82719 0 0 479.3453684939712 291.21189294986567 770.5572614438369 0 0 0 0 0 0.5 0 0 0 V 0.82719 - 8 + NaN NaN 457340.5 NaN 22140 5567 27707 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27712 108.25 NaN 7777500 35 0 1133200 0.325 + 35184 YVKKVTSTVFN 11 71 643.3616303455345 1284.708707757869 2 643.3616943359375 MULTI HCD FTMS 0 0 0 27711 2280561.25 0.5687326990698023 21 -0.154632568359375 1 Unmodified _YVKKVTSTVFN_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 2.9952420565917617 0.40578455234410343 2 M 1 -1 8.9794 0 0 0.69894 0 0 706.3337435313503 444.311614493313 1150.6453580246632 0 0 0 0 0 0.5 0 0 0 M 0.69894 - 9 + NaN NaN 1104955.1 NaN 22141 5569 27711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27715 108.27 NaN 2280300 35 0 463210 0.327 -1 0 119 437.3312543868826 NaN 0 437.3299865722656 PEAK HCD FTMS 0 0 0 27714 193235.078125 0.11134613430173056 -1 0.006561279296875 1 NaN NaN 2 V 1 -1 7.4743 0 0 0.8565 0 0 479.34541595151074 291.21116052799067 770.5565764795015 0 0 0 0 0 0.5 0 0 0 V 0.8565 - 11 + NaN NaN 310552.5 NaN 22142 5571 27714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27718 108.28 NaN 4931600 35 0 975290 0.326 + 14962 LLGSILHDKKK 11 59 626.3932069650476 1250.7718609968952 2 626.3945922851562 MULTI HCD FTMS 0 0 0 27717 2668176.25 0.4748599785063526 4 -0.03131866455078125 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3971033616749 444.31127607221134 1116.7083794338862 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 3 + NaN NaN 622498.9 NaN 22143 5573 27717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27719 108.28 NaN 3971500 35 0 618740 0.232 + 28078 TGVILLRLDRL 11 69 634.9074709541537 NaN 0 634.9081420898438 PEAK HCD FTMS 0 0 0 27717 2242738.75 0.703315044384882 1 -0.00856781005859375 2 Unmodified _TGVILLRLDRL_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF 2.9952420565917617 0.33362350433860827 2 M 1 11 4.6041 0 0 0.36316 0 0 689.4217927362458 444.3113366170593 1133.7331293533052 0 0 0 0 0 0 0 0 0 M 0.36316 - 6 + NaN NaN 579214.9 NaN 22144 5573 27717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27721 108.29 NaN 6178100 35 0 622140 0.326 + 10436 IPCSERQLIKP 11 71 642.3608538848574 NaN 0 642.361328125 PEAK HCD FTMS 0 0 0 27720 924318.5625 0.3279345593350332 2 -0.015777587890625 1 Unmodified _IPCSERQLIKP_ ENSG00000178163|ENST00000326756|ZNF518B 2.9952420565917617 0.33362350433860827 2 M 1 11 4.6041 0 0 0.35894 0 0 704.3321186508304 444.3115685057355 1148.6436871565659 0 0 0 0 0 0 0 0 0 M 0.35894 - 12 + NaN NaN 1044214.5 NaN 22145 5574 27720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27722 108.29 NaN 1216800 35 0 115300 0.264 + 20917 PKSRKVPH 8 129 474.7895202636719 NaN 0 474.7895202636719 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PKSRKVPH_ nc|ENSG00000188157|O00468-2|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468|AGRN 10.823927491677226 0.38822285293237185 2 A 1 8 10.485 0 0 1.1065 0 0 656.3925875749744 217.1081484430297 873.5007360180041 0 0 0 0 0 0.5 0 0 0 A 1.1065 - 26 + NaN NaN 288683.7 NaN 22146 5574 27720 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27725 108.3 NaN 1898800 35 0 555720 0.411 + 14879 LKLLISKLKAH 11 73 632.4290021127341 1262.8434512922681 2 632.4290161132812 MULTI HCD FTMS 0 0 0 27724 680880.375 0.30269125802094937 4 -0.0265350341796875 1 Unmodified _LKLLISKLKAH_ ENSG00000065325|ENST00000262441|GLP2R 0.3070304955306653 0.41757413505135293 2 M 1 11 3.4949 0 0 0.27674 0 0 446.4787657080297 682.2960299127561 1128.7747956207859 0 0 0 0 0 0 0 0 0 M 0.27674 - 29 + NaN NaN 657748.8 NaN 22147 5576 27724 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27736 108.37 NaN 1341000 35 0 244350 0.327 -1 0 123 437.33143594340083 872.6483189536017 2 437.3322448730469 MULTI HCD FTMS 0 0 0 27735 867123.25 0.3755979420851386 -4 0.02674102783203125 1 NaN NaN 2 R 1 -1 1.8667 0 0 0.21391 0 0 56.06350189961831 657.4686373346311 713.5321392342495 0 0 0 0 0 0.1382104921644452 0 0 0 R 0.21391 - 40 + NaN NaN 295999.1 NaN 22148 5586 27735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27737 108.37 NaN 1286700 35 0 265620 0.262 + 28233 TLHDMAIILIK 11 59 634.3764622053624 1266.7383714775247 2 634.3755493164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TLHDMAIILIK_ REV__ENST00000355904.8_1_8:30492613-30510982:-|nuORF 2.9952420565917617 0.40578455234410343 2 M 1 -1 8.4949 0 0 0.67061 0 0 688.3683042840642 444.311270929741 1132.679575213805 0 0 0 0 0 0.5 0 0 0 M 0.67061 + + 24 + NaN NaN 283185.5 NaN 22149 5586 27735 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27739 108.38 NaN 3888300 35 0 663540 0.327 + 12099 KKKDHLISGLL 11 64 626.3932810014888 1250.7720090697776 2 626.8934326171875 MULTI HCD FTMS 0 0 0 27738 382774.9375 0.18691653048143253 1 -0.01238250732421875 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 11 10.485 0 0 0.83825 0 0 672.397213211224 444.31128815299223 1116.7085013642163 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 9 + NaN NaN 683435.5 NaN 22150 5587 27738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27740 108.38 NaN 4517800 35 0 624170 0.261 + 14750 LHTMQGKLIML 11 72 642.8609332463303 1283.7073135594605 2 643.35986328125 MULTI HCD FTMS 0 0 0 27738 856184.375 0.4793406538343753 -4 0.0297088623046875 2 Unmodified _LHTMQGKLIML_ REV__ENSG00000091536|ENST00000647165|MYO15A 8.745405648335112 0.3805662881914433 2 M 1 -1 8.8515 0 0 0.68953 0 0 705.3326899871122 444.31137346678327 1149.6440634538953 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.68953 + + 13 + NaN NaN 793461.4 NaN 22151 5587 27738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27741 108.39 NaN 1422000 35 0 225130 0.261 + 28079 TGVILLRLDRL 11 56 634.9074709541537 NaN 0 634.9053344726562 PEAK HCD FTMS 0 0 0 27738 314688.875 0.09868533287171927 13 -0.09786224365234375 3 Unmodified _TGVILLRLDRL_ ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF 5.731851221503515 0.3258605322397891 2 T 1 10 4.6041 0 0 0.36316 0 0 755.4412713987386 408.28977526731 1163.7310466660488 0 0 0 0 0 0 0 0 0 + T 0.36316 + + 3 + NaN NaN 304679.8 NaN 22152 5587 27738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27743 108.39 NaN 3380300 35 0 452130 0.411 + 14751 LHTMQGKLIML 11 80 642.8609332463303 1283.7073135594605 2 643.3635864257812 MULTI HCD FTMS 0 0 0 27742 477045.1875 0.26707699738714824 -3 0.029205322265625 1 Unmodified _LHTMQGKLIML_ REV__ENSG00000091536|ENST00000647165|MYO15A 5.296884461304476 0.39569033063702824 2 M 1 -1 8.2268 0 0 0.64086 0 0 705.3323425703269 444.3116083302142 1149.643950900541 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.64086 + + 20 + NaN NaN 1109410.1 NaN 22153 5588 27742 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27745 108.4 NaN 2582500 35 0 463290 0.326 + 14963 LLGSILHDKKK 11 59 626.3932810014888 1250.7720090697776 2 626.3945922851562 MULTI HCD FTMS 0 0 0 27744 1389092 0.42404512408260336 7 -0.0502777099609375 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 -1 10.485 0 0 0.83825 0 0 672.39715447057 444.31126767212737 1116.7084221426974 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 5 + NaN NaN 476857.1 NaN 22154 5589 27744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27746 108.4 NaN 3998100 35 0 441340 0.261 + 21263 PRKKSPNELVD 11 64 641.8585527695326 NaN 0 641.8631591796875 PEAK HCD FTMS 0 0 0 27744 1175940 0.7228420205325884 -2 0.0198974609375 2 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3219746049828039 2 M 1 11 9.6041 0 0 0.74932 0 0 703.3276911780512 444.3112029862353 1147.6388941642865 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 9 + NaN NaN 708039.2 NaN 22155 5589 27744 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27749 108.41 NaN 3828800 35 0 378280 0.366 + 31126 VTRKIKDNFY 10 80 642.3606860047823 NaN 0 642.3624877929688 PEAK HCD FTMS 0 0 0 27748 1035394.6875 0.45704925057597706 9 -0.06212615966796875 1 Unmodified _VTRKIKDNFY_ tr|U7SLN9|U7SLN9_FUSNUThiaminebiosynthesisproteinThiFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02115PE=4SV=1 2.9952420565917617 0.3376207769591857 2 V 1 9 5.4846 0 0 0.42758 0 0 349.27368913280594 831.3537251374726 1180.6274142702785 0 0 0 0 0 0 0 0 0 + V 0.42758 + + 16 + NaN NaN 1068369.1 NaN 22156 5591 27748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27752 108.43 NaN 953450 35 0 173490 0.327 -1 KIKKLIMI 8 77 522.8482287553444 1043.6819045774887 2 522.8486328125 MULTI HCD FTMS 0 0 0 27751 488675.65625 0.5270810904823121 1 -0.0063323974609375 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))KIKKLIM(Oxidation (M))I_ tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1 0.7936320650641473 0.540814922690045 2 M 1 -1 5.2165 0 0 0.49982 0 0 465.30838270424493 444.31129523000214 909.6196779342471 0 0 0 0 0 0.4247425010840047 0 0 0 M 0.49982 + + 9 + NaN NaN 274698.2 NaN 22157 5593 27751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27755 108.44 NaN 1034800 35 0 61211 0.411 + 14874 LKLIFCWR 8 109 539.81640625 NaN 0 539.81640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LKLIFCWR_ WDR72|p.S976F|1|0.3|ENSG00000166415|chr15:53609538-53609538|G/A|missense_variant 2.577480529830294 0.38822285293237185 2 M 1 8 5.5899 0 0 0.51873 0 0 499.24366658829496 444.3113830741729 943.5550496624678 0 0 0 0 0 0.3807196863200844 0 0 0 M 0.51873 - 8 + NaN NaN 408995 NaN 22158 5595 27754 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27757 108.45 NaN 1733000 35 0 265830 0.411 -1 0 215 437.33143594340083 872.6483189536017 2 437.3304138183594 MULTI HCD FTMS 0 0 0 27756 1576982.625 0.683076400793105 6 -0.0407562255859375 1 NaN NaN 2 V 1 -1 6.9897 0 0 0.80098 0 0 479.34558974255214 291.2114351861938 770.5570249287459 0 0 0 0 0 0.5 0 0 0 V 0.80098 - 76 + NaN NaN 615792.1 NaN 22159 5596 27756 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27761 108.47 NaN 3329100 35 0 373360 0.411 + 2714 DVLENPSKKRP 11 89 641.8585527695326 NaN 0 641.8566284179688 PEAK HCD FTMS 0 0 0 27760 951944.625 0.5851536440380778 8 -0.05323028564453125 1 Unmodified _DVLENPSKKRP_ REV__ENSG00000088833|ENST00000216879|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;REV__nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 4.897010918128616 0.3282287337590871 2 M 1 -1 9.6041 0 0 0.74932 0 0 703.3272420364252 444.3116470555352 1147.6388890919604 0 0 0 0 0 0.5 0 0 0 M 0.74932 - 12 + NaN NaN 1091051.8 NaN 22160 5599 27760 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27765 108.49 NaN 1340800 35 0 264260 0.363 + 14964 LLGSILHDKKK 11 65 626.3932720406838 1250.7719911481674 2 626.390625 MULTI HCD FTMS 0 0 0 27764 922823.75 0.6139474690246176 7 -0.04634857177734375 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 8.155526934196011 0.3831532958467648 2 M 1 -1 10.485 0 0 0.83825 0 0 672.39704984091 444.31124755641605 1116.708297397326 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 11 + NaN NaN 429665 NaN 22161 5602 27764 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27770 108.52 NaN 2046200 35 0 370800 0.412 + 12100 KKKDHLISGLL 11 76 626.3932720406838 1250.7719911481674 2 626.3924560546875 MULTI HCD FTMS 0 0 0 27769 819286.25 0.5450647749303917 11 -0.0753936767578125 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 7.608950283845883 0.38555039536024605 2 M 1 11 10.485 0 0 0.83825 0 0 672.3968268882497 444.3113197691886 1116.7081466574382 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 23 + NaN NaN 703090.3 NaN 22162 5606 27769 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27773 108.53 NaN 2259400 35 0 397500 0.382 + 12101 KKKDHLISGLL 11 69 626.3932720406838 1250.7719911481674 2 626.3950805664062 MULTI HCD FTMS 0 0 0 27772 612118.6875 0.40723780563005213 13 -0.0874481201171875 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 7.608950283845883 0.38555039536024605 2 M 1 11 10.485 0 0 0.83825 0 0 672.3970204842284 444.31129389362957 1116.708314377858 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 21 + NaN NaN 711604.9 NaN 22163 5608 27772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27775 108.54 NaN 4080700 35 0 404120 0.371 + 8797 HILSNCELVKK 11 85 642.3616644946027 NaN 0 642.36083984375 PEAK HCD FTMS 0 0 0 27774 936059.625 0.8740056601333615 -1 0.00650787353515625 1 Unmodified _HILSNCELVKK_ ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK 2.9952420565917617 0.33362350433860827 2 M 1 11 4.6041 0 0 0.35894 0 0 704.3336953751144 444.31160850903024 1148.6453038841446 0 0 0 0 0 0 0 0 0 M 0.35894 - 16 + NaN NaN 1144651.6 NaN 22164 5609 27774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27777 108.54 NaN 2193000 35 0 349690 0.386 + 14893 LKQQRKLLEI 10 71 634.9072476312692 1267.7999423293384 2 634.9082641601562 MULTI HCD FTMS 0 0 0 27776 530665 0.5020201090903845 6 -0.0418853759765625 1 Unmodified _LKQQRKLLEI_ REV__ENSG00000065809|ENST00000181796|FAM107B;REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF;REV__nc|ENSG00000065809|Q9H098|FAM107B 1.4819007175156935 0.4674597685733628 2 T 1 -1 3.9794 0 0 0.31388 0 0 755.4412519990634 408.2907085256826 1163.731960524746 0 0 0 0 0 0 0 0 0 T 0.31388 - 9 + NaN NaN 690329.5 NaN 22165 5610 27776 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27779 108.55 NaN 2241000 35 0 409380 0.326 -1 0 161 437.33143594340083 872.6483189536017 2 437.33258056640625 MULTI HCD FTMS 0 0 0 27778 1409285.875 0.6104378754227313 21 -0.141387939453125 1 NaN NaN 2 V 1 -1 7.4743 0 0 0.8565 0 0 479.34577795869694 291.21119807573564 770.5569760344326 0 0 0 0 0 0.5 0 0 0 V 0.8565 - 78 + NaN NaN 449495 NaN 22166 5611 27778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27780 108.55 NaN 2099400 35 0 330510 0.261 -1 LKTVLRLIRD 10 69 634.9072476312692 1267.7999423293384 2 634.9085083007812 MULTI HCD FTMS 0 0 0 27778 520716.75 0.4926088580181291 7 -0.04799652099609375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LKTVLRLIRD_ ENST00000469753.5_1_2:46300813-46300849:+|nuORF 3.5964929083625545 0.45626689593999237 2 T 1 -1 3.9794 0 0 0.31388 0 0 755.4414961396884 408.2902860053772 1163.7317821450656 0 0 0 0 0 0 0 0 0 T 0.31388 + + 17 + NaN NaN 410456.2 NaN 22167 5611 27778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27782 108.56 NaN 1966100 35 0 302580 0.327 + 11809 KELIQLIKQR 10 64 634.9072476312692 1267.7999423293384 2 634.910400390625 MULTI HCD FTMS 0 0 0 27781 314022.90625 0.2970721898985322 8 -0.051971435546875 1 Unmodified _KELIQLIKQR_ ENSG00000103994|ENST00000564754|ZNF106;ENST00000433596.1_1_2:43908485-43908692:-|nuORF;nc|ENSG00000103994|Q9H2Y7|ZNF106 3.2813086475875832 0.45793521633868084 2 T 1 10 4.6041 0 0 0.36316 0 0 755.4415571748447 408.29041177346045 1163.7319689483052 0 0 0 0 0 0 0 0 0 T 0.36316 - 9 + NaN NaN 501157.5 NaN 22168 5612 27781 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27788 108.59 NaN 1670100 35 0 202640 0.327 -1 0 169 437.33143594340083 872.6483189536017 2 437.8328857421875 MULTI HCD FTMS 0 0 0 27787 423928.125 0.3997943869112097 16 -0.1067047119140625 1 NaN NaN 2 S 1 -1 7.2185 0 0 0.82719 0 0 393.30328895652025 389.2899263971313 782.5932153536515 0 0 0 0 0 0.5 0 0 0 S 0.82719 - 45 + NaN NaN 351239.4 NaN 22169 5617 27787 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27790 108.6 NaN 2286800 35 0 418360 0.368 + 12102 KKKDHLISGLL 11 68 626.3932720406838 1250.7719911481674 2 626.8975830078125 MULTI HCD FTMS 0 0 0 27789 203818.828125 0.24789354044153783 13 -0.0868682861328125 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 11 10.485 0 0 0.83825 0 0 672.3967621188145 444.3115521436114 1116.708314262426 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 18 + NaN NaN 689166.8 NaN 22170 5618 27789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27798 108.64 NaN 1519800 35 0 276650 0.411 + 21362 PTKPNRRVRK 10 71 626.3932720406838 1250.7719911481674 2 626.3934326171875 MULTI HCD FTMS 0 0 0 27797 490597.875 0.32639095348933717 29 -0.2006378173828125 1 Unmodified _PTKPNRRVRK_ ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1 3.2813086475875832 0.45793521633868084 2 M 1 10 10.485 0 0 0.83825 0 0 672.3968935752614 444.31136243995996 1116.7082560152214 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 5 + NaN NaN 564983 NaN 22171 5625 27797 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27802 108.66 NaN 1046900 35 0 252540 0.411 -1 0 65 634.3780237300704 633.3707472634703 1 634.3770751953125 MULTI HCD FTMS 0 0 0 27801 232634.375 0.18621751730922628 -8 0.05280303955078125 1 NaN NaN 2 {I|L} 1 -1 2.7642 0 0 0.43643 0 0 186.03663837235308 331.2270601861938 517.2636985585468 0 0 0 0 0 0 0 0 0 {I|L} 0.43643 - 9 + NaN NaN 415037.9 NaN 22172 5628 27801 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27804 108.67 NaN 1013800 35 0 252620 0.411 -1 0 68 634.3780237300704 633.3707472634703 1 634.3790283203125 MULTI HCD FTMS 0 0 0 27803 237944.703125 0.1904682911664211 -7 0.0471954345703125 1 NaN NaN 2 R 1 -1 3.4949 0 0 0.55179 0 0 167.04202519491406 307.2059725397094 474.2479977346235 0 0 0 0 0 0 0 0 0 R 0.55179 - 5 + NaN NaN 410036.4 NaN 22173 5629 27803 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27810 108.7 NaN 733020 35 0 39101 0.411 + 31007 VSKKKKKKK 9 136 551.3956405139243 NaN 0 551.3955688476562 PEAK HCD FTMS 0 0 0 27809 83279.3359375 0.30395710490684724 1 -0.00708770751953125 1 Unmodified _VSKKKKKKK_ AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1 0 0.29524684227089293 2 {M(Oxidation (M))|F}VN 3 9 5.6036 0 0 0.50906 0 0 126.21374271618875 611.373360484997 737.5871032011858 0 0 0 0 0 0 0 0 0.3252574989159953 {M(Oxidation (M))|F}VN 0.50906 - 48 + NaN NaN 325627.3 NaN 22174 5634 27809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27813 108.72 NaN 3896800 35 0 429160 0.326 + 21261 PRKKSPNELVD 11 76 641.8594039166289 1281.7042549000578 2 641.8594970703125 MULTI HCD FTMS 0 0 0 27812 904492.625 0.6994975293112735 1 -0.00954437255859375 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3877749288398915 2 VW 2 10 10.089 0 0 0.78713 0 0 348.269966520497 645.2827242486936 993.5526907691906 0 0 0 0 0 0.5 0 0 0 VW 0.78713 - 50 + NaN NaN 676982.9 NaN 22175 5636 27812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27814 108.72 NaN 1147800 35 0 295650 0.264 -1 0 86 492.29914765549785 982.5837423777957 2 492.2991027832031 MULTI HCD FTMS 0 0 0 27812 107876.4765625 0.22997162434156368 2 -0.01670074462890625 2 NaN NaN 2 V 1 -1 10.485 0 0 1.067 0 0 348.2530061987073 532.2255122167993 880.4785184155066 0 0 0 0 0 0.5 0 0 0 V 1.067 - 63 + NaN NaN 283707.4 NaN 22176 5636 27812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27817 108.74 NaN 1403800 35 0 293190 0.411 + 14965 LLGSILHDKKK 11 72 626.393320994282 1250.772089055364 2 626.39501953125 MULTI HCD FTMS 0 0 0 27816 169808.8125 0.17147103124299065 2 -0.01383209228515625 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 1.3295316138638542 0.4130897924953357 2 M 1 -1 10.485 0 0 0.83825 0 0 672.397278343582 444.31127622837033 1116.7085545719524 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 21 + NaN NaN 513656.8 NaN 22177 5638 27816 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27822 108.76 NaN 4083200 35 0 575870 0.411 + 35185 YVKKVTSTVFN 11 84 643.3615047789226 1284.7084566246451 2 643.3628540039062 MULTI HCD FTMS 0 0 0 27821 1661490.125 0.808739513080186 -2 0.01317596435546875 1 Unmodified _YVKKVTSTVFN_ REV__ENSG00000162843|ENST00000437684|WDR64;REV__nc|ENSG00000162843|B1ANS9|WDR64 2.9952420565917617 0.40578455234410343 2 M 1 -1 8.4949 0 0 0.66123 0 0 706.3334678481654 444.31175955862994 1150.6452274067954 0 0 0 0 0 0.5 0 0 0 M 0.66123 - 22 + NaN NaN 1338376.6 NaN 22178 5642 27821 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27824 108.77 NaN 3324300 35 0 681010 0.411 + 12103 KKKDHLISGLL 11 70 626.3908027576674 1250.7670525821347 2 626.3903198242188 MULTI HCD FTMS 0 0 0 27823 1736682.75 0.4273528339351591 -1 0.00695037841796875 1 Unmodified _KKKDHLISGLL_ ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 11 9.6041 0 0 0.76786 0 0 672.3917172900018 444.3115390744853 1116.703256364487 0 0 0 0 0 0.5 0 0 0 M 0.76786 - 12 + NaN NaN 1092953.5 NaN 22179 5643 27823 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27826 108.78 NaN 3765500 35 0 1053000 0.327 + 25663 SHRKSGEILKI 11 73 634.3761385465656 1266.737724159931 2 634.3746337890625 MULTI HCD FTMS 0 0 0 27825 2823326.25 1 0 0 1 Unmodified _SHRKSGEILKI_ REV__ENSG00000100650|ENST00000557154|SRSF5;REV__ENST00000554465.5_1_14:70237039-70238175:+|nuORF;REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF;REV__nc|ENSG00000100650|Q13243-3|SRSF5 4.897010918128616 0.3974440401582579 2 {I|L} 1 -1 7.2185 0 0 0.56985 0 0 819.4035846614024 331.22638879947505 1150.6299734608774 0 0 0 0 0 0.5 0 0 0 {I|L} 0.56985 + + 29 + NaN NaN 668534.9 NaN 22180 5644 27825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27827 108.78 NaN 3091300 35 0 660940 0.261 + 14966 LLGSILHDKKK 11 56 626.3908027576674 1250.7670525821347 2 626.3931884765625 MULTI HCD FTMS 0 0 0 27825 4063814.75 1 0 0 2 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 2.9952420565917617 0.40578455234410343 2 M 1 -1 10.485 0 0 0.83825 0 0 672.39231504423 444.3112878960509 1116.703602940281 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 10 + NaN NaN 581319.7 NaN 22181 5644 27825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27831 108.8 NaN 3714000 35 0 831990 0.345 + 14894 LKQQRKLLEI 10 74 634.9071544769414 1267.7997560206827 2 634.9088745117188 MULTI HCD FTMS 0 0 0 27830 581622.125 0.2508536235723566 3 -0.0198516845703125 1 Unmodified _LKQQRKLLEI_ REV__ENSG00000065809|ENST00000181796|FAM107B;REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF;REV__nc|ENSG00000065809|Q9H098|FAM107B 3.5964929083625545 0.45626689593999237 2 A 1 -1 6.9897 0 0 0.55133 0 0 123.06448838960485 1070.6770723932252 1193.74156078283 0 0 0 0 0 0 0 0 0 A 0.55133 - 22 + NaN NaN 979937.6 NaN 22182 5647 27830 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27833 108.8 NaN 2419900 35 0 649580 0.411 + 25664 SHRKSGEILKI 11 92 634.3761385465656 1266.737724159931 2 634.3772583007812 MULTI HCD FTMS 0 0 0 27832 831768.1875 0.29460576421162804 4 -0.02630615234375 1 Unmodified _SHRKSGEILKI_ REV__ENSG00000100650|ENST00000557154|SRSF5;REV__ENST00000554465.5_1_14:70237039-70238175:+|nuORF;REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF;REV__nc|ENSG00000100650|Q13243-3|SRSF5 4.897010918128616 0.3974440401582579 2 {I|L} 1 -1 6.9897 0 0 0.55179 0 0 819.4032882279104 331.22736536197505 1150.6306535898855 0 0 0 0 0 0.5 0 0 0 {I|L} 0.55179 + + 51 + NaN NaN 830838.2 NaN 22183 5648 27832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27840 108.84 NaN 4292600 35 0 467710 0.327 + 21262 PRKKSPNELVD 11 90 641.8582925187419 1281.7020321042837 2 641.8587646484375 MULTI HCD FTMS 0 0 0 27839 1449170.75 0.7920806460626985 10 -0.0709075927734375 1 Unmodified _PRKKSPNELVD_ ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C 7.101721422024254 0.3877749288398915 2 VW 2 10 10.089 0 0 0.78713 0 0 348.2685043506098 645.2807711236936 993.5492754743034 0 0 0 0 0 0.5 0 0 0 VW 0.78713 - 46 + NaN NaN 871586.6 NaN 22184 5654 27839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27842 108.85 NaN 1673400 35 0 253270 0.327 -1 0 142 437.33134502201597 872.648137110832 2 437.332275390625 MULTI HCD FTMS 0 0 0 27841 681687.4375 0.364683391125865 12 -0.0839691162109375 1 NaN NaN 2 S 1 -1 8.0989 0 0 0.92809 0 0 393.30251613746424 389.2898348443969 782.5923509818612 0 0 0 0 0 0.5 0 0 0 S 0.92809 - 49 + NaN NaN 343491.5 NaN 22185 5655 27841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27843 108.85 NaN 2231100 35 0 686940 0.252 + 30794 VPSLNKRV 8 106 456.7862522853057 911.5579516374114 2 456.7861328125 MULTI HCD FTMS 0 0 0 27841 539549.125 0.9813851640623827 1 -0.01206207275390625 2 Unmodified _VPSLNKRV_ REV__ENSG00000162620|ENST00000354431|LRRIQ3;REV__nc|ENSG00000162620|A6PVS8-2|LRRIQ3 2.577480529830294 0.5381683276125971 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 22 NaN NaN 406457.2 NaN 22186 5655 27841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27844 108.86 NaN 1291900 35 0 138840 0.261 + 30507 VMLVLPQGA 9 88 464.26873792886903 NaN 0 464.2688293457031 PEAK HCD FTMS 0 0 0 27841 98635.21875 0.20368991616730917 1 -0.01206207275390625 3 Unmodified _VMLVLPQGA_ ENSG00000172059|ENST00000305883|KLF11;nc|ENSG00000172059|O14901-2|KLF11 2.302733041254933 0.2840881193086663 2 P 1 8 4.6041 0 0 0.49692 0 0 366.1585649187488 460.27988611392817 826.438451032677 0 0 0 0 0 0 0 0 0 + P 0.49692 + + 4 + NaN NaN 281471.3 NaN 22187 5655 27841 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27846 108.86 NaN 277880 35 0 28598 0.411 + 14897 LKRKLIRLFG 10 78 622.4212187639399 NaN 0 622.4203491210938 PEAK HCD FTMS 0 0 0 27845 117062.9140625 0.5377959688846078 -4 0.03095245361328125 1 Unmodified _LKRKLIRLFG_ ENSG00000204209|ENST00000374542|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX 0.4007161486938917 0.3398413315442166 2 Y 1 10 5.4846 0 0 0.4413 0 0 168.18809425998785 908.5389846957887 1076.7270789557765 0 0 0 0 0 0 0 0 0 Y 0.4413 - 15 + NaN NaN 188538.1 NaN 22188 5656 27845 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27851 108.89 NaN 1536000 35 0 288560 0.362 + 32661 WNPRVKRVGR 10 80 634.3773330543889 1266.7401131755778 2 634.8778076171875 MULTI HCD FTMS 0 0 0 27850 172992.78125 0.1958612188935276 -10 0.07045745849609375 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 1.4819007175156935 0.4674597685733628 2 K 1 9 5.4846 0 0 0.43297 0 0 614.3963176060581 521.2404879205686 1135.6368055266266 0 0 0 0 0 0.5 0 0 0 + K 0.43297 + + 9 + NaN NaN 485764.8 NaN 22189 5660 27850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27855 108.91 NaN 2280000 35 0 469250 0.327 + 14967 LLGSILHDKKK 11 69 626.394155951554 1250.773758969908 2 626.3936767578125 MULTI HCD FTMS 0 0 0 27854 744235.3125 0.9336211872527616 -12 0.083587646484375 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 2.735195868890462 0.4069250265843076 2 M 1 -1 10.485 0 0 0.83825 0 0 672.398590871875 444.3113858580359 1116.709976729911 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 24 + NaN NaN 472464.5 NaN 22190 5663 27854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27858 108.92 NaN 1322400 35 0 484570 0.327 + 12623 KVRCIKVQ 8 92 487.30347851861865 NaN 0 487.2878112792969 PEAK HCD FTMS 0 0 0 27857 92181.4375 0.49959424351672443 3 -0.0192718505859375 1 Unmodified _KVRCIKVQ_ ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;nc|ENSG00000127249|Q4VNC1-3|ATP13A4 5.230669730166228 0.38822285293237185 2 Q 1 7 3.9794 0 0 0.40915 0 0 320.25028066281726 521.2563570611936 841.506637724011 0 0 0 0 0 0 0 0 0 + Q 0.40915 + + 23 + NaN NaN 360675.6 NaN 22191 5665 27857 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27862 108.94 NaN 1756400 35 0 188370 0.327 + -1 FKPIPLDL 8 132 492.79201644945005 983.5694799657001 2 492.7920837402344 MULTI HCD FTMS 0 0 0 27861 412249.15625 0.839099802831497 -2 0.01285552978515625 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))FKPIPLDL_ REV__ENST00000477559.2_1_1:236347083-236385124:+|nuORF 5.230669730166228 0.5342319408533849 2 N 1 -1 5.4846 0 0 0.55762 0 0 334.2728791339645 532.2248657385423 866.4977448725069 0 0 0 0 0 0 0 0 0 N 0.55762 - 116 + NaN NaN 438214.7 NaN 22192 5668 27861 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27864 108.95 NaN 2439900 35 0 547550 0.327 + 14968 LLGSILHDKKK 11 73 626.394155951554 1250.773758969908 2 626.3915405273438 MULTI HCD FTMS 0 0 0 27863 458404.125 0.5750544165748159 -6 0.03826904296875 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 8.155526934196011 0.3831532958467648 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3989997066599 444.31120569200726 1116.710205398667 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 17 + NaN NaN 466796.9 NaN 22193 5669 27863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27865 108.95 NaN 2730600 35 0 373260 0.224 + 24032 RWPAVISR 8 106 492.79201644945005 983.5694799657001 2 492.7923278808594 MULTI HCD FTMS 0 0 0 27863 81126.4765625 0.1651263791713529 -1 0.00628662109375 2 Unmodified _RWPAVISR_ ENST00000261507.10_1_4:166248809-166254516:+|nuORF;ENST00000393766.6_1_4:166248857-166259022:+|nuORF;ENST00000507013.5_2_4:166248857-166248917:+|nuORF 4.75600775471527 0.5349361699807423 2 N 1 8 5.4846 0 0 0.55762 0 0 334.27229679371095 532.2250152463357 866.4973120400466 0 0 0 0 0 0 0 0 0 N 0.55762 - 72 + NaN NaN 410258.8 NaN 22194 5669 27863 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27868 108.96 NaN 3650400 35 0 776650 0.327 + 14969 LLGSILHDKKK 11 63 626.394155951554 1250.773758969908 2 626.8975219726562 MULTI HCD FTMS 0 0 0 27867 361251.28125 0.4254313807378014 1 -0.0061492919921875 1 Unmodified _LLGSILHDKKK_ REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF 5.296884461304476 0.39569033063702824 2 M 1 -1 10.485 0 0 0.83825 0 0 672.3988358351512 444.3113153823815 1116.7101512175327 0 0 0 0 0 0.5 0 0 0 M 0.83825 - 7 + NaN NaN 579319.1 NaN 22195 5671 27867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27875 109 NaN 954360 35 0 118110 0.354 + 30306 VKRVAPKR 8 130 477.3208089039433 952.6270648746867 2 477.321044921875 MULTI HCD FTMS 0 0 0 27874 239587.1875 0.5408327189690051 7 -0.04578399658203125 1 Unmodified _VKRVAPKR_ ENSG00000102053|ENST00000338957|ZC3H12B;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B 0 0.5419923896992614 2 A{I|L} 2 7 4.6927 0 0 0.49261 0 0 186.17169731864186 579.3097094075896 765.4814067262314 0 0 0 0 0 0 0 0 0 A{I|L} 0.49261 - 113 + NaN NaN 322240.1 NaN 22196 5677 27874 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27877 109.01 NaN 6128400 35 0 2178800 0.374 -1 0 210 431.27675030238424 430.26947383578425 1 431.29156494140625 MULTI HCD FTMS 0 0 0 27876 172207.78125 0.015839231271852116 -28 0.18733978271484375 1 NaN NaN 2 {I|L} 1 -1 1.2529 0 0 0.29118 0 0 93.02098248011863 221.13356958560783 314.1545520657265 0 0 0 0 0 0.02837731870687953 0 0 0 {I|L} 0.29118 - 13 + NaN NaN 1714946.9 NaN 22197 5678 27876 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27879 109.01 NaN 1628600 35 0 447200 0.411 + 25665 SHRKSGEILKI 11 81 634.3773330543889 1266.7401131755778 2 634.377685546875 MULTI HCD FTMS 0 0 0 27878 379280.71875 0.31096370341097707 8 -0.05303192138671875 1 Unmodified _SHRKSGEILKI_ REV__ENSG00000100650|ENST00000557154|SRSF5;REV__ENST00000554465.5_1_14:70237039-70238175:+|nuORF;REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF;REV__nc|ENSG00000100650|Q13243-3|SRSF5 4.897010918128616 0.3974440401582579 2 W 1 -1 7.7642 0 0 0.61293 0 0 633.3199195531711 444.31137876886123 1077.6312983220323 0 0 0 0 0 0.5 0 0 0 W 0.61293 - 42 + NaN NaN 586231.9 NaN 22198 5679 27878 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27884 109.04 NaN 2294100 35 0 420070 0.344 + 12521 KRSHKTALRR 10 64 626.8891345167302 NaN 0 626.8895263671875 PEAK HCD FTMS 0 0 0 27883 225021.65625 0.4236216091177188 11 -0.071136474609375 1 Unmodified _KRSHKTALRR_ REV__ENSG00000158748|ENST00000289753|HTR6 1.4819007175156935 0.33891598740166873 2 M 1 -1 5.4846 0 0 0.43815 0 0 673.3886012494328 444.31155250461995 1117.7001537540527 0 0 0 0 0 0 0 0 0 M 0.43815 - 13 + NaN NaN 641722 NaN 22199 5683 27883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27887 109.05 NaN 572370 35 0 38383 0.411 + 14940 LLFLKKKKK 9 126 573.4086715052176 NaN 0 573.4085693359375 PEAK HCD FTMS 0 0 0 27886 73228.015625 0.1370337611271019 -14 0.090179443359375 1 Unmodified _LLFLKKKKK_ ENST00000344423.9_1_8:28205640-28205820:-|nuORF 0 0.29524684227089293 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.61056 0 0 126.21102647578512 868.5121247056251 994.7231511814102 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.61056 + + 26 + NaN NaN 265539 NaN 22200 5685 27886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27891 109.07 NaN 1109700 35 0 149150 0.327 -1 0 158 476.84245341687387 951.6703539005478 2 476.84197998046875 MULTI HCD FTMS 0 0 0 27890 185485.25 0.3319176501403716 -16 0.10408782958984375 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.57631 0 0 660.5039246675715 217.10801111392814 877.6119357814996 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.57631 - 110 + NaN NaN 326834.6 NaN 22201 5688 27890 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27898 109.11 NaN 1122000 35 0 199400 0.327 + -1 WCRRSCRCCC 10 84 520.8689090717037 NaN 0 520.868408203125 PEAK HCD FTMS 0 0 0 27897 112021.0390625 0.23124841465891202 -11 0.071136474609375 1 5 Carbamidomethyl (C) _WC(Carbamidomethyl (C))RRSC(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000328965.8_2_11:120081700-120082114:+|nuORF 0.13989180515190558 0.34006456103295546 2 A 1 -1 5.4846 0 0 0.5275 0 0 185.21445476689263 780.4602995479672 965.6747543148599 0 0 0 0 0 0 0 0 0 A 0.5275 - 29 + NaN NaN 205124.9 NaN 22202 5694 27897 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27900 109.12 NaN 865860 35 0 140850 0.327 + 34832 YRKVLPALVIP 11 65 634.9081120829136 1267.801671232627 2 634.908203125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YRKVLPALVIP_ ENSG00000148468|ENST00000378116|FAM171A1 1.1933415558491238 0.4136870758253112 2 T 1 11 4.6041 0 0 0.36316 0 0 755.4429198671959 408.2903019003194 1163.7332217675153 0 0 0 0 0 0 0 0 0 T 0.36316 - 4 + NaN NaN 202555.8 NaN 22203 5695 27899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27902 109.12 NaN 830510 35 0 57270 0.327 + 31006 VSKKKKKKK 9 110 551.3953359536787 1100.7761189741573 2 551.3952026367188 MULTI HCD FTMS 0 0 0 27901 151239.46875 0.2593722433081053 -33 0.2144317626953125 1 Unmodified _VSKKKKKKK_ AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1 0 0.3510170533115441 2 {M(Oxidation (M))|F} 1 9 6.9897 0 0 0.63498 0 0 126.21126637403025 824.4857392036249 950.6970055776552 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63498 - 39 + NaN NaN 223621.4 NaN 22204 5696 27901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27903 109.13 NaN 830640 35 0 55859 0.261 + 12109 KKKKKKKAA 9 116 529.3822548300782 1056.7499567269563 2 529.382080078125 MULTI HCD FTMS 0 0 0 27901 186728.984375 0.36889590229430796 1 -0.00890350341796875 2 Unmodified _KKKKKKKAA_ REV__ENSG00000121766|ENST00000344147|ZCCHC17;REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense;REV__nc|ENSG00000121766|Q9NP64-2|ZCCHC17;REV__nc|ENSG00000121766|Q9NP64-3|ZCCHC17 0 0.3510170533115441 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.66143 0 0 126.21117742905888 780.4593154407108 906.6704928697698 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.66143 - 65 + NaN NaN 223262.3 NaN 22205 5696 27901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27909 109.16 NaN 507360 35 0 65315 0.327 + 453 ALPALLLRRL 10 97 568.3871103480191 1134.759667762838 2 568.3868408203125 MULTI HCD FTMS 0 0 0 27908 144316.984375 0.34633399088250477 1 -0.00901031494140625 1 Unmodified _ALPALLLRRL_ ENSG00000130829|ENST00000342782|DUSP9 1.6526216038709556 0.46655611578153744 2 Y 1 10 3.9794 0 0 0.35068 0 0 439.32969572306723 529.3393648736936 968.6690605967608 0 0 0 0 0 0 0 0 0 Y 0.35068 - 85 + NaN NaN 171563.8 NaN 22206 5701 27908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27910 109.16 NaN 1028700 35 0 363910 0.261 + 14657 LGKKQLIRRI 10 82 612.9162738298623 NaN 0 612.9164428710938 PEAK HCD FTMS 0 0 0 27908 52463.00390625 0.25144845831658014 1 -0.00901031494140625 2 Unmodified _LGKKQLIRRI_ REV__tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1 1.4819007175156935 0.33891598740166873 2 M 1 -1 5.4846 0 0 0.44815 0 0 647.4621730485934 442.2955721490844 1089.7577451976779 0 0 0 0 0 0 0 0 0 M 0.44815 - 20 + NaN NaN 254447.4 NaN 22207 5701 27908 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27912 109.17 NaN 966660 35 0 75370 0.327 + 30293 VKKMKLNKI 9 103 551.3611751110469 1100.7077972888937 2 551.36181640625 MULTI HCD FTMS 0 0 0 27911 219630.6875 0.29184114187488874 -3 0.021820068359375 1 Unmodified _VKKMKLNKI_ REV__ENST00000367435.3_1_1:193219869-193219926:+|nuORF 1.844237919475145 0.33703635659052655 2 QC{I|L} 3 -1 8.3328 0 0 0.75704 0 0 422.3053557725712 331.2273263046937 753.5326820772649 0 0 0 0 0 0.3807196863200844 0 0 0 QC{I|L} 0.75704 - 67 + NaN NaN 238002.7 NaN 22208 5702 27911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27913 109.17 NaN 985880 35 0 136400 0.261 + 14886 LKPKALVPRP 10 88 559.8742363281075 1117.7339197230149 2 559.8736572265625 MULTI HCD FTMS 0 0 0 27911 165696.8125 0.38534836965084834 -2 0.01540374755859375 2 Unmodified _LKPKALVPRP_ REV__MYPN|p.P650R|1|0.56|ENSG00000138347|chr10:68166642-68166642|C/G|missense_variant 1.6526216038709556 0.46655611578153744 2 N 1 -1 4.525 0 0 0.40484 0 0 783.5546117169587 217.10837732486564 1000.6629890418243 0 0 0 0 0 0.4247425010840047 0 0 0 N 0.40484 - 19 + NaN NaN 252622.4 NaN 22209 5702 27911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27914 109.17 NaN 1337500 35 0 247020 0.261 + 12419 KPIKKVLHTV 10 82 581.8873276703058 NaN 0 581.8871459960938 PEAK HCD FTMS 0 0 0 27911 87973.515625 0.3276068088717402 -3 0.021820068359375 3 Unmodified _KPIKKVLHTV_ REV__ENSG00000067900|ENST00000399799|ROCK1 1.4819007175156935 0.33891598740166873 2 K 1 -1 6.9897 0 0 0.60165 0 0 509.4183735457745 521.2151392396179 1030.6335127853924 0 0 0 0 0 0 0 0 0 K 0.60165 + + 29 + NaN NaN 308452.9 NaN 22210 5702 27911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27915 109.18 NaN 362700 35 0 59099 0.261 + 10352 ILTLLHVKRL 10 64 603.4107671195653 NaN 0 603.4097290039062 PEAK HCD FTMS 0 0 0 27911 134121.09375 0.2967026676849238 -3 0.021820068359375 4 Unmodified _ILTLLHVKRL_ REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant 0.4007161486938917 0.3398413315442166 2 H 1 -1 6.9897 0 0 0.58015 0 0 465.3466674404993 599.3775118463499 1064.7241792868492 0 0 0 0 0 0 0 0 0 H 0.58015 + + 4 + NaN NaN 143661.2 NaN 22211 5702 27911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27917 109.18 NaN 767640 35 0 197320 0.411 + 12229 KLELLYKSFK 10 73 634.8815562512576 1267.7485595693151 2 634.3778076171875 MULTI HCD FTMS 0 0 0 27916 83716.2265625 0.32614550801372433 -4 0.03753662109375 1 Unmodified _KLELLYKSFK_ ENSG00000164609|ENST00000297151|SLU7;ENST00000520841.1_1_5:159833399-159835410:-|nuORF;ENST00000523219.1_1_5:159833399-159834623:-|nuORF 3.5964929083625545 0.45626689593999237 2 M 1 10 2.2185 0 0 0.17499 0 0 689.3725962898214 444.31144679807 1133.6840430878915 0 0 0 0 0 0 0 0 0 M 0.17499 - 26 + NaN NaN 332578 NaN 22212 5703 27916 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27919 109.19 NaN 2121800 35 0 453810 0.327 + 12518 KRRRKKSS 8 87 523.3404977616517 1044.6664425901033 2 523.3403930664062 MULTI HCD FTMS 0 0 0 27918 442276.59375 0.5156878162961689 -2 0.02324676513671875 1 Unmodified _KRRRKKSS_ REV__ENST00000389589.8_1_3:157823778-157823919:-|nuORF 2.302733041254933 0.5385759549224092 2 {I|L} 1 -1 3.0989 0 0 0.29664 0 0 187.1526008926408 741.3860567682249 928.5386576608657 0 0 0 0 0 0 0 0 0 {I|L} 0.29664 - 18 + NaN NaN 412407.5 NaN 22213 5704 27918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27920 109.19 NaN 429790 35 0 81018 0.261 + 10353 ILTLLHVKRL 10 77 603.4107671195653 NaN 0 603.4114379882812 PEAK HCD FTMS 0 0 0 27918 165336.296875 0.36575693633544526 -1 0.00753021240234375 2 Unmodified _ILTLLHVKRL_ REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant 1.3295316138638542 0.339046394236575 2 C(Carbamidomethyl (C)) 1 -1 3.9794 0 0 0.33029 0 0 620.4880858975306 421.2566317193969 1041.7447176169276 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.33029 - 15 + NaN NaN 169648.4 NaN 22214 5704 27918 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27923 109.21 NaN 976230 35 0 203690 0.411 -1 0 102 512.3553712230922 511.34809475649223 1 512.3560791015625 MULTI HCD FTMS 0 0 0 27922 152900.453125 0.19455878415117261 1 -0.0071868896484375 1 NaN NaN 2 R 1 -1 5.4846 0 0 1.0726 0 0 157.09261590403003 195.13894067935783 352.2315565833878 0 0 0 0 0 0 0 0 0 R 1.0726 - 10 + NaN NaN 379312.6 NaN 22215 5706 27922 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27925 109.21 NaN 869880 35 0 55046 0.327 + 25731 SKLLRWVR 8 106 529.3368176078623 NaN 0 529.347900390625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _SKLLRWVR_ ENST00000569682.5_1_15:30892398-30892566:+|nuORF 8.593279151180031 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.66149 0 0 126.12000041530287 780.4594647883504 906.5794652036533 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.66149 - 55 + NaN NaN 217101.8 NaN 22216 5707 27924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27926 109.22 NaN 1135700 35 0 213470 0.261 + 11928 KFIFTLIVS 9 95 534.329915760572 1066.645278587944 2 534.8333740234375 MULTI HCD FTMS 0 0 0 27924 97931.2890625 0.4595494912226933 1 -0.00909423828125 2 Unmodified _KFIFTLIVS_ ENST00000518327.1_1_8:6566222-6612655:+|nuORF 3.944395688203298 0.32111559684428237 2 C 1 9 8.2268 0 0 0.77128 0 0 447.3422733060731 513.2818697565061 960.6241430625792 0 0 0 0 0 0.4247425010840047 0 0 0 C 0.77128 - 39 + NaN NaN 278994.6 NaN 22217 5707 27924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27929 109.23 NaN 941210 35 0 48877 0.397 -1 0 136 485.3558772186627 968.6972015041255 2 485.3562927246094 MULTI HCD FTMS 0 0 0 27928 181612.640625 0.2649372408856435 9 -0.05925750732421875 1 NaN NaN 2 K 1 -1 10.278 0 0 1.061 0 0 822.5885722090068 0 822.5885722090068 0 3.9961396676478422 0 0 0 0 0 0 0 K 1.061 - 60 + NaN NaN 374675.9 NaN 22218 5709 27928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27931 109.24 NaN 1125400 35 0 132780 0.371 + -1 LFDEMRCWCSD 11 143 520.8689090717037 NaN 0 520.8699340820312 PEAK HCD FTMS 0 0 0 27930 124075.6484375 0.2561331089148358 4 -0.0263671875 1 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))LFDEMRC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SD_ REV__ENST00000359333.7_1_7:142984446-142984506:+|nuORF 0 0.34212014346876374 2 A 1 -1 5.4846 0 0 0.5275 0 0 185.2155495045609 780.4588759489209 965.6744254534817 0 0 0 0 0 0 0 0 0 A 0.5275 - 18 + NaN NaN 391407.6 NaN 22219 5710 27930 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27934 109.25 NaN 977570 35 0 50281 0.356 + 12110 KKKKKKKAA 9 139 529.3820982439851 1056.74964355477 2 529.3825073242188 MULTI HCD FTMS 0 0 0 27933 259202.296875 0.6314303501817562 -1 0.00656890869140625 1 Unmodified _KKKKKKKAA_ REV__ENSG00000121766|ENST00000344147|ZCCHC17;REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense;REV__nc|ENSG00000121766|Q9NP64-2|ZCCHC17;REV__nc|ENSG00000121766|Q9NP64-3|ZCCHC17 0 0.3510170533115441 2 {[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}K[RV]{M(Oxidation (M))|F} 8 -1 8.9132 0 0 0.84345 0 0 0 123.18827051125814 123.18827051125814 6.148977612681643 0 0 0 0 0.5 0 0 0.4247425010840047 {[QN]|[E{I|L}]|[KN]}{[SA]|[TG]}K[RV]{M(Oxidation (M))|F} 0.84345 - 88 NaN NaN 338530.5 NaN 22220 5712 27933 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27939 109.27 NaN 867350 35 0 60382 0.378 + 15848 LPKKVHPKK 9 133 537.8608278233868 1073.7071027135735 2 537.860595703125 MULTI HCD FTMS 0 0 0 27938 227229.1875 0.4699832433559179 -7 0.04598236083984375 1 Unmodified _LPKKVHPKK_ REV__ENSG00000152284|ENST00000282111|TCF7L1 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 -1 10.485 0 0 0.97648 0 0 73.0838997873005 850.5528283227861 923.6367281100867 0 0 0 0 0 0.5 0 0 0 {M(Oxidation (M))|F} 0.97648 - 54 + NaN NaN 322676.2 NaN 22221 5716 27938 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27942 109.29 NaN 728650 35 0 102530 0.326 + 12610 KVKKPKKVH 9 93 546.3742706917527 1090.7339884503053 2 546.3740844726562 MULTI HCD FTMS 0 0 0 27941 194279.546875 0.3389339520590432 -5 0.03271484375 1 Unmodified _KVKKPKKVH_ AREL1|p.Y354H|1|0.05|ENSG00000119682|chr14:74675719-74675719|A/G|missense_variant 4.3292370932331545 0.3181982124262546 2 C(Carbamidomethyl (C)) 1 9 10.969 0 0 1.0057 0 0 912.6892934813585 0 912.6892934813585 0 8.750612633917 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 1.0057 - 30 + NaN NaN 199306.7 NaN 22222 5718 27941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27943 109.29 NaN 1028800 35 0 74733 0.261 + 15849 LPKKVHPKK 9 108 537.8608278233868 1073.7071027135735 2 537.8604736328125 MULTI HCD FTMS 0 0 0 27941 192974.046875 0.39913256492997595 -5 0.03271484375 2 Unmodified _LPKKVHPKK_ REV__ENSG00000152284|ENST00000282111|TCF7L1 2.0597508629832335 0.3354026079994024 2 C(Carbamidomethyl (C)){I|L} 2 -1 8.5044 0 0 0.79206 0 0 466.3292426136631 331.22760950260005 797.5568521162631 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)){I|L} 0.79206 - 62 + NaN NaN 252421.3 NaN 22223 5718 27941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27945 109.3 NaN 1575100 35 0 289050 0.411 + -1 EDSMMMMNML 10 234 432.8161065751368 NaN 0 432.8160095214844 PEAK HCD FTMS 0 0 0 27944 363257.21875 0.9790883221358929 14 -0.13031005859375 1 4 Oxidation (M) _EDSM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))M(Oxidation (M))NML_ REV__ENSG00000132017|ENST00000254337|DCAF15 0.13989180515190558 0.34006456103295546 2 A 1 -1 5.4846 0 0 0.63507 0 0 185.21449206477718 604.3552166527561 789.5697087175333 0 0 0 0 0 0 0 0 0 A 0.63507 - 16 + NaN NaN 572602.1 NaN 22224 5719 27944 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27947 109.3 NaN 1131100 35 0 153150 0.359 + -1 WCRRSCRCCC 10 137 520.8689090717037 NaN 0 520.8687133789062 PEAK HCD FTMS 0 0 0 27946 170536.65625 0.35204397074947313 13 -0.12320709228515625 1 5 Carbamidomethyl (C) _WC(Carbamidomethyl (C))RRSC(Carbamidomethyl (C))RC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))_ REV__ENST00000328965.8_2_11:120081700-120082114:+|nuORF 0.13989180515190558 0.34006456103295546 2 D 1 -1 5.0886 0 0 0.48942 0 0 704.5671535807084 217.10810266666252 921.6752562473708 0 0 0 0 0 0.3494850021680094 0 0 0 D 0.48942 - 39 + NaN NaN 370204.6 NaN 22225 5720 27946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27949 109.31 NaN 1060400 35 0 200110 0.327 + 12230 KLEPVVLLLL 10 96 568.8888940473738 NaN 0 568.8886108398438 PEAK HCD FTMS 0 0 0 27948 143535.8125 0.3865270041078444 1 -0.0123748779296875 1 Unmodified _KLEPVVLLLL_ REV__ENST00000398985.1_1_17:25887428-25904874:+|nuORF 6.2057823575117 0.3348729994311477 2 E 1 -1 8.2268 0 0 0.72434 0 0 765.5441932687726 238.15291773013908 1003.6971109989116 0 0 0 0 0 0.3494850021680094 0 0.4247425010840047 0 E 0.72434 + + 20 + NaN NaN 273824.4 NaN 22226 5721 27948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27950 109.32 NaN 715670 35 0 189980 0.261 + 30960 VRPHYKLLEL 10 54 634.3774425793983 1266.7403322255966 2 634.3772583007812 MULTI HCD FTMS 0 0 0 27948 134761.875 0.38221272092510017 1 -0.0123748779296875 2 Unmodified _VRPHYKLLEL_ REV__ENSG00000171720|ENST00000305264|HDAC3;REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF;REV__nc|ENSG00000171720|O15379-2|HDAC3 6.2057823575117 0.44245551207394906 2 {I|L} 1 -1 7.0116 0 0 0.55352 0 0 652.3449130685436 498.2794588678344 1150.624371936378 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.55352 + + 2 + NaN NaN 203745.5 NaN 22227 5721 27948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27951 109.32 NaN 450550 35 0 43056 0.262 + 737 ARKLQLIIL 9 75 534.3687749025606 1066.7229968719212 2 534.368896484375 MULTI HCD FTMS 0 0 0 27948 123729.671875 0.34406411871397596 7 -0.05756378173828125 3 Unmodified _ARKLQLIIL_ REV__ENSG00000120156|ENST00000380036|TEK;REV__nc|ENSG00000120156|Q02763-2|TEK;REV__nc|ENSG00000120156|Q02763-3|TEK;REV__TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant 1.844237919475145 0.33703635659052655 2 Q 1 -1 5.4846 0 0 0.51415 0 0 740.5515929185993 195.09510217838127 935.6466950969806 0 0 0 0 0 0 0 0 0 Q 0.51415 + + 39 + NaN NaN 175576.7 NaN 22228 5721 27948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27953 109.32 NaN 1059600 35 0 176490 0.412 -1 0 110 490.34087732313156 489.3336008565316 1 490.34271240234375 MULTI HCD FTMS 0 0 0 27952 326158.1875 0.3091636546321546 17 -0.15207672119140625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 18 NaN NaN 413606.7 NaN 22229 5722 27952 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27955 109.33 NaN 953880 35 0 141050 0.411 + 14903 LKVVAPPRGLL 11 103 581.8866105592416 NaN 0 581.8872680664062 PEAK HCD FTMS 0 0 0 27954 158607.46875 1 0 0 1 Unmodified _LKVVAPPRGLL_ ENST00000482397.1_1_7:50672830-50674105:-|nuORF 2.9952420565917617 0.33362350433860827 2 W 1 11 4.6041 0 0 0.3963 0 0 395.30335920266435 577.3371549631485 972.6405141658129 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.3963 - 29 + NaN NaN 368795.6 NaN 22230 5723 27954 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27957 109.34 NaN 534740 35 0 87636 0.327 + 30272 VKKFRQKK 8 70 531.3502611511044 NaN 0 531.349853515625 PEAK HCD FTMS 0 0 0 27956 178772.734375 0.5455996545992255 1 -0.00917816162109375 1 Unmodified _VKKFRQKK_ ENSG00000110448|ENST00000347785|CD5 0.6903765706972694 0.38822285293237185 2 T 1 8 2.4743 0 0 0.23327 0 0 547.363717027015 409.2564791315063 956.6201961585214 0 0 0 0 0 0 0 0 0 T 0.23327 - 9 + NaN NaN 173497.1 NaN 22231 5724 27956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27958 109.34 NaN 1368500 35 0 140720 0.261 + 16624 LVVRFLKR 8 114 515.8478770491433 1029.6812011650866 2 515.8475341796875 MULTI HCD FTMS 0 0 0 27956 183289.34375 0.27152865595685804 -12 0.08933258056640625 2 Unmodified _LVVRFLKR_ ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76198560-76243086:+|nuORF;nc|ENSG00000119685|Q6EMB2-2|TTLL5 0.6903765706972694 0.5409681170271811 2 Q 1 8 7.7423 0 0 0.75191 0 0 126.14150550909615 772.4596041315061 898.6011096406023 0 0 0 0 0 0 0 0 0.4247425010840047 Q 0.75191 - 56 + NaN NaN 298824.3 NaN 22232 5724 27956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27960 109.35 NaN 1106700 35 0 72982 0.401 + 12680 KWITLLKR 8 158 529.348794334817 1056.6830357364338 2 529.34814453125 MULTI HCD FTMS 0 0 0 27959 204027.78125 0.3854106171597948 -11 0.0854339599609375 1 Unmodified _KWITLLKR_ REV__ENST00000375344.7_1_9:97222409-97222715:+|nuORF 4.75600775471527 0.5349361699807423 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.66148 0 0 126.14361238962722 780.4596597547809 906.6032721444082 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.66148 - 181 + NaN NaN 418461 NaN 22233 5725 27959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27963 109.36 NaN 1081800 35 0 155930 0.411 + 14999 LLLKEPRD 8 106 492.29899475430653 982.5834365754131 2 492.2989196777344 MULTI HCD FTMS 0 0 0 27962 208539.953125 0.562774955915131 5 -0.0498046875 1 Unmodified _LLLKEPRD_ REV__ENSG00000186862|ENST00000619208|PDZD7;REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF 7.910154910731844 0.5302565402355366 2 M 1 -1 8.9794 0 0 0.91386 0 0 404.2084426202337 444.31146417545665 848.5199067956903 0 0 0 0 0 0.5 0 0 0 M 0.91386 - 19 + NaN NaN 415987.2 NaN 22234 5727 27962 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27965 109.37 NaN 1276200 35 0 49976 0.326 -1 0 108 485.3558772186627 968.6972015041255 2 485.3556823730469 MULTI HCD FTMS 0 0 0 27964 417599.09375 0.6091952152323934 28 -0.27728271484375 1 NaN NaN 2 E 1 -1 5.7133 0 0 0.5898 0 0 372.311554355655 464.3304842584594 836.6420386141144 0 0 0 0 0 0 0 0.2614393726401688 0 E 0.5898 - 59 + NaN NaN 294501.7 NaN 22235 5728 27964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27966 109.37 NaN 602870 35 0 33582 0.261 + 21044 PLTAVLELLK 10 104 548.8520196170914 1095.6894863009827 2 548.8524169921875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PLTAVLELLK_ REV__ENST00000495210.1_1_1:222817751-222823660:+|nuORF;REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 1.4819007175156935 0.4674597685733628 2 W 1 -1 12.218 0 0 1.1151 0 0 891.5979773671921 0 891.5979773671921 0 0.4357508785945008 0 0 0 0 0 0 0 W 1.1151 - 119 + NaN NaN 191370.6 NaN 22236 5728 27964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27968 109.38 NaN 556130 35 0 84914 0.411 + 3582 EKIIRRIVN 9 111 570.8652215488421 1139.715890164484 2 570.8655395507812 MULTI HCD FTMS 0 0 0 27967 224836.359375 1 0 0 1 Unmodified _EKIIRRIVN_ REV__tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1 3.944395688203298 0.32111559684428237 2 {M(Oxidation (M))|F} 1 -1 11.594 0 0 1.0173 0 0 974.6336280568654 0 974.6336280568654 0 8.494850021680094 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0173 - 117 + NaN NaN 264559.2 NaN 22237 5729 27967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27970 109.39 NaN 954760 35 0 88146 0.327 + 5611 FLVVRLKKV 9 96 551.3794856628574 NaN 0 551.395263671875 PEAK HCD FTMS 0 0 0 27969 42643.66796875 0.6237887813113508 3 -0.042236328125 1 Unmodified _FLVVRLKKV_ REV__ENSG00000143442|ENST00000271715|POGZ;REV__nc|ENSG00000143442|Q7Z3K3-2|POGZ;REV__nc|ENSG00000143442|Q7Z3K3-3|POGZ;REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ;REV__nc|ENSG00000143442|Q7Z3K3-6|POGZ;REV__nc|ENSG00000143442|Q7Z3K3-7|POGZ;REV__POGZ|p.A984S|1|0.28|ENSG00000143442|chr1:151406085-151406085|C/A|missense_variant 0.5247636613948944 0.2927039108006614 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.635 0 0 126.17862710323921 824.4858638419822 950.6644909452215 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.635 + + 29 + NaN NaN 245602.7 NaN 22238 5730 27969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27971 109.39 NaN 636600 35 0 169040 0.261 + 30273 VKKFRQKK 8 69 531.3502611511044 NaN 0 531.36572265625 PEAK HCD FTMS 0 0 0 27969 121961.0546875 0.37221508942452375 7 -0.0770416259765625 2 Unmodified _VKKFRQKK_ ENSG00000110448|ENST00000347785|CD5 0.6903765706972694 0.38822285293237185 2 {M(Oxidation (M))|F} 1 7 2.4743 0 0 0.23327 0 0 743.5201806500619 167.10749231510002 910.6276729651619 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.23327 + + 8 + NaN NaN 188159.8 NaN 22239 5730 27969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27972 109.39 NaN 685080 35 0 64510 0.261 + 12158 KKKKKKLVF 9 94 573.9105494416275 NaN 0 573.91064453125 PEAK HCD FTMS 0 0 0 27969 129952.65625 0.38204511042507805 16 -0.15749359130859375 3 Unmodified _KKKKKKLVF_ REV__ENST00000514180.5_1_8:122652059-122653623:+|nuORF;REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF 0 0.29524684227089293 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.61002 0 0 127.21448247283418 868.5111393341592 995.7256218069934 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.61002 + + 18 + NaN NaN 204715 NaN 22240 5730 27969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27973 109.4 NaN 853120 35 0 104160 0.261 + -1 LFDEMRCWCSD 11 92 520.8689090717037 NaN 0 520.8688354492188 PEAK HCD FTMS 0 0 0 27969 107711.8203125 0.22235276422846045 23 -0.23746490478515625 4 Acetyl (Protein N-term),2 Carbamidomethyl (C) _(Acetyl (Protein N-term))LFDEMRC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SD_ REV__ENST00000359333.7_1_7:142984446-142984506:+|nuORF 0 0.34212014346876374 2 A 1 -1 5.4846 0 0 0.5275 0 0 185.2146711006174 780.4596983054136 965.674369406031 0 0 0 0 0 0 0 0 0 A 0.5275 - 11 + NaN NaN 220288.9 NaN 22241 5730 27969 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27975 109.4 NaN 880130 35 0 144100 0.327 -1 0 105 524.3609614248343 1046.7073699164685 2 524.3609008789062 MULTI HCD FTMS 0 0 0 27974 410553.34375 0.6471138659133222 -11 0.0970916748046875 1 NaN NaN 2 S 1 -1 6.2814 0 0 0.60011 0 0 607.4605570275997 349.18610559635005 956.6466626239499 0 0 0 0 0 0 0 0.3807196863200844 0 S 0.60011 - 122 + NaN NaN 219968.6 NaN 22242 5731 27974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27976 109.41 NaN 1116800 35 0 101020 0.261 + 30308 VKRVKKKK 8 107 507.36872268580487 1012.7228924384098 2 507.36907958984375 MULTI HCD FTMS 0 0 0 27974 173066.515625 0.32225277158301574 -5 0.0469512939453125 2 Unmodified _VKRVKKKK_ REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF 0 0.5419923896992614 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.69019 0 0 126.21004199241573 736.4330531142365 862.6430951066523 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.69019 - 44 + NaN NaN 279521.1 NaN 22243 5731 27974 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27978 109.41 NaN 1211300 35 0 112890 0.327 + 22234 QNKKKLVR 8 99 507.33463321078506 NaN 0 507.334716796875 PEAK HCD FTMS 0 0 0 27977 313121.46875 0.3972685299907422 -23 0.1823883056640625 1 Unmodified _QNKKKLVR_ REV__ENST00000339438.10_1_1:115282507-115292512:-|nuORF;REV__ENST00000533818.5_1_1:115291023-115292512:-|nuORF 5.230669730166228 0.38822285293237185 2 A 1 -1 6.9897 0 0 0.69024 0 0 202.1733472865091 736.4331439705823 938.6064912570914 0 0 0 0 0 0 0 0 0 A 0.69024 - 14 + NaN NaN 276580.5 NaN 22244 5732 27977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27979 109.42 NaN 1213200 35 0 78335 0.261 + 23328 RKAKAKLLF 9 106 537.8608278233868 1073.7071027135735 2 537.861083984375 MULTI HCD FTMS 0 0 0 27977 358240.78125 0.7409574717342723 9 -0.08013153076171875 2 Unmodified _RKAKAKLLF_ REV__ENSG00000234602|ENST00000513312|MCIDAS;REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF 2.0597508629832335 0.3354026079994024 2 {M(Oxidation (M))|F} 1 -1 5.0886 0 0 0.47393 0 0 143.16699369640054 780.4583834283811 923.6253771247816 0 0 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 0.47393 + + 32 + NaN NaN 290906.6 NaN 22245 5732 27977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27980 109.42 NaN 2106700 35 0 352770 0.261 + 23991 RVVKRFIL 8 108 515.8478770491433 1029.6812011650866 2 515.8477172851562 MULTI HCD FTMS 0 0 0 27977 277148.9375 0.41057421538859246 -4 0.04253387451171875 3 Unmodified _RVVKRFIL_ ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 7.4743 0 0 0.72588 0 0 143.1679911496381 736.4350069635374 879.6029981131755 0 0 0 0 0 0.5 0 0 0 + {M(Oxidation (M))|F} 0.72588 + + 56 + NaN NaN 427374.7 NaN 22246 5732 27977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27981 109.42 NaN 921760 35 0 68752 0.261 -1 0 97 551.3213986491362 550.3141221825362 1 551.3206787109375 MULTI HCD FTMS 0 0 0 27977 210867.53125 0.08982646265238026 19 -0.1921539306640625 4 NaN NaN 2 TD 2 -1 13.188 0 0 2.3964 0 0 0 331.22739587955317 331.22739587955317 10.423377782955221 0 0 0 0 0 0 0 0 TD 2.3964 - 27 + NaN NaN 225145.4 NaN 22247 5732 27977 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27983 109.43 NaN 847910 35 0 149980 0.327 + 12611 KVKKPKKVH 9 95 546.3742706917527 1090.7339884503053 2 546.37451171875 MULTI HCD FTMS 0 0 0 27982 503514.9375 0.8784162328597521 10 -0.077606201171875 1 Unmodified _KVKKPKKVH_ AREL1|p.Y354H|1|0.05|ENSG00000119682|chr14:74675719-74675719|A/G|missense_variant 4.3292370932331545 0.3181982124262546 2 H 1 8 3.9794 0 0 0.36484 0 0 545.4090725043477 405.24933801822505 950.6584105225727 0 0 0 0 0 0 0 0 0 + H 0.36484 + + 81 + NaN NaN 224025.2 NaN 22248 5733 27982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27984 109.43 NaN 1599700 35 0 268640 0.262 -1 0 148 432.8158955506123 863.6172381680246 2 432.8163146972656 MULTI HCD FTMS 0 0 0 27982 195175.203125 0.4407171921088447 -21 0.17862701416015625 2 NaN NaN 2 K 1 -1 10.485 0 0 1.214 0 0 717.508135850445 0 717.508135850445 0 5 0 0 0 0 0 0 0 K 1.214 - 33 + NaN NaN 328427.5 NaN 22249 5733 27982 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27986 109.44 NaN 809800 35 0 84037 0.327 + 12612 KVKKVHWK 8 100 526.8390080719016 1051.6634632106031 2 526.839111328125 MULTI HCD FTMS 0 0 0 27985 157640.515625 0.46164521335033676 -5 0.05902862548828125 1 Unmodified _KVKKVHWK_ ENST00000446672.2_1_13:19955792-19968894:+|nuORF 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 8 11.109 0 0 1.0563 0 0 886.5806975629454 0 886.5806975629454 0 10.271788311612964 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.0563 - 54 + NaN NaN 207826.3 NaN 22250 5734 27985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27987 109.44 NaN 426830 35 0 106720 0.261 + 26261 SQPQLVLRAQK 11 47 634.377550643066 1266.740548352932 2 634.3779907226562 MULTI HCD FTMS 0 0 0 27985 154454.34375 0.6961802017068499 1 -0.00897216796875 2 Unmodified _SQPQLVLRAQK_ REV__ENSG00000138190|ENST00000260762|EXOC6;REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6 2.498486711656943 0.4079631525365919 2 {I|L} 1 -1 8.2268 0 0 0.64945 0 0 652.3444466850274 498.2773836725219 1150.6218303575492 0 0 0 0 0 0.4247425010840047 0 0 0 {I|L} 0.64945 + + 2 + NaN NaN 175552.5 NaN 22251 5734 27985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27989 109.45 NaN 1206000 35 0 96221 0.327 + 14831 LKAIKSILT 9 111 493.83482146119246 985.655089989185 2 493.8345642089844 MULTI HCD FTMS 0 0 0 27988 340355.3125 0.32048017368840936 -21 0.18392181396484375 1 Unmodified _LKAIKSILT_ REV__tr|U7SL15|U7SL15_FUSNUCopper-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02035PE=3SV=1 1.844237919475145 0.33703635659052655 2 K 1 -1 5.3786 0 0 0.54569 0 0 637.4275336921131 217.1078280084594 854.5353617005725 0 0 0 0 0 0.5 0 0 0 K 0.54569 + + 62 + NaN NaN 280331.2 NaN 22252 5735 27988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27990 109.45 NaN 484120 35 0 79657 0.261 + 454 ALPALLLRRL 10 87 568.3870903247384 NaN 0 568.386474609375 PEAK HCD FTMS 0 0 0 27988 223042.5 0.6832777334589217 -3 0.03470611572265625 2 Unmodified _ALPALLLRRL_ ENSG00000130829|ENST00000342782|DUSP9 1.6526216038709556 0.33876987398426067 2 E 1 10 4.7539 0 0 0.41894 0 0 764.5378087238925 238.1525820367797 1002.6903907606721 0 0 0 0 0 0 0 0.3494850021680094 0 E 0.41894 - 36 + NaN NaN 168080.5 NaN 22253 5735 27988 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27992 109.46 NaN 502300 35 0 37332 0.412 + 15011 LLLLQIRKA 9 105 534.3687749025606 1066.7229968719212 2 534.3687744140625 MULTI HCD FTMS 0 0 0 27991 89293.484375 0.24830490166839422 22 -0.203155517578125 1 Unmodified _LLLLQIRKA_ ENST00000451554.1_1_2:159145303-159312956:-|nuORF 0.5247636613948944 0.34703895399870666 2 P 1 9 3.9794 0 0 0.37305 0 0 551.57860097524 415.06277197262153 966.6413729478616 0 0 0 0 0 0 0 0 0 P 0.37305 - 28 + NaN NaN 252712.9 NaN 22254 5736 27991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27994 109.46 NaN 1842800 35 0 188130 0.327 + 23992 RVVKRFIL 8 89 515.8478770491433 1029.6812011650866 2 515.8480224609375 MULTI HCD FTMS 0 0 0 27993 398542.375 0.5904089851137574 1 -0.00676727294921875 1 Unmodified _RVVKRFIL_ ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 7 6.7217 0 0 0.65279 0 0 143.17048188661187 736.4333753430774 879.6038572296893 0 0 0 0 0 0.4247425010840047 0 0 0 + {M(Oxidation (M))|F} 0.65279 + + 25 + NaN NaN 273901.7 NaN 22255 5737 27993 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27996 109.47 NaN 1131900 35 0 187730 0.327 + 11703 KALNPKRK 8 141 477.81407024122484 953.6135875492497 2 477.8137512207031 MULTI HCD FTMS 0 0 0 27995 547962.0625 0.8956023879344363 -4 0.03217315673828125 1 Unmodified _KALNPKRK_ REV__ENST00000495104.1_1_4:165841825-165841852:-|nuORF 13.50788311687929 0.4944073034352369 2 S 1 -1 8.9794 0 0 0.94162 0 0 170.13117184953654 693.410871115472 863.5420429650085 0 0 0 0 0 0.5 0 0 0 S 0.94162 - 63 + NaN NaN 328135.3 NaN 22256 5738 27995 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27998 109.48 NaN 1207900 35 0 235380 0.327 + 748 ARVGKKGKK 9 99 486.32716111205843 970.6397692909169 2 486.32745361328125 MULTI HCD FTMS 0 0 0 27997 663286.75 0.7583320078264216 -1 0.00644683837890625 1 Unmodified _ARVGKKGKK_ ENSG00000087263|ENST00000566157|OGFOD1;ENST00000563733.5_1_16:56485524-56492507:+|nuORF;ENST00000568172.1_1_16:56485524-56500079:+|nuORF;ENST00000569645.1_1_16:56485524-56487341:+|nuORF 1.844237919475145 0.33703635659052655 2 PD 2 9 5.7577 0 0 0.59318 0 0 423.3120848200169 332.23029504947505 755.5423798694919 0 0 0 0 0 0.3054621874040891 0 0 0 PD 0.59318 - 57 + NaN NaN 275651.4 NaN 22257 5739 27997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 27999 109.48 NaN 1387200 35 0 93486 0.261 -1 0 125 461.3311506972296 460.3238742306296 1 463.3429260253906 MULTI HCD FTMS 0 0 0 27997 416862.15625 0.6460177252579211 20 -0.1932525634765625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 4 NaN NaN 305909.7 NaN 22258 5739 27997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28001 109.48 NaN 762720 35 0 64424 0.393 -1 0 106 490.34087732313156 489.3336008565316 1 490.3428649902344 MULTI HCD FTMS 0 0 0 28000 253071.109375 0.23988479227181358 35 -0.289093017578125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 320921.1 NaN 22259 5740 28000 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28004 109.5 NaN 1019700 35 0 213080 0.411 + 31206 VVLLTLLL 8 118 442.3161044473943 NaN 0 442.30059814453125 PEAK HCD FTMS 0 0 0 28003 90678.984375 1 0 0 1 Unmodified _VVLLTLLL_ REV__ENST00000412128.1_1_2:232577893-232577953:+|nuORF 0.7936320650641473 0.38822285293237185 2 V 1 -1 3.9794 0 0 0.45086 0 0 127.18002412759354 653.3364732836407 780.5164974112342 0 0 0 0 0 0 0 0 0 V 0.45086 + + 18 + NaN NaN 406419.6 NaN 22260 5742 28003 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28006 109.51 NaN 1546500 35 0 405470 0.327 + 11700 KALLLELK 8 110 464.31432893998937 926.6141049467788 2 464.3141174316406 MULTI HCD FTMS 0 0 0 28005 1034557.625 1 0 0 1 Unmodified _KALLLELK_ ENSG00000099804|ENST00000215574|CDC34;ENST00000586788.1_1_19:531880-536341:+|nuORF 2.302733041254933 0.5385759549224092 2 A 1 7 3.9794 0 0 0.42946 0 0 204.1840932490008 648.3802729089698 852.5643661579707 0 0 0 0 0 0 0 0 0 + A 0.42946 + + 35 + NaN NaN 328365.9 NaN 22261 5743 28005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28007 109.51 NaN 1279600 35 0 244580 0.261 -1 0 90 468.8308914287988 935.6472299243976 2 468.83135986328125 MULTI HCD FTMS 0 0 0 28005 175449.625 0.5180163393612157 26 -0.224945068359375 2 NaN NaN 2 Q 1 -1 10.713 0 0 1.145 0 0 789.5752827581852 0 789.5752827581852 0 9.119543704721593 0 0 0 0 0 0 0 Q 1.145 - 25 + NaN NaN 284534.3 NaN 22262 5743 28005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28008 109.51 NaN 798440 35 0 116390 0.261 + 30187 VHLLKKKLLI 10 89 402.2900039236773 NaN 0 402.2900390625 PEAK HCD FTMS 0 0 0 28005 157147.34375 0.8844120964322352 1 -0.01247406005859375 3 Unmodified _VHLLKKKLLI_ ENSG00000255398|ENST00000528880|HCAR3;HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant 0 0.34018428902965525 2 H 1 9 5.0886 0 0 0.63405 0 0 489.407783870989 173.08179651431877 662.4895803853078 0 0 0 0 0 0.3494850021680094 0 0 0 + H 0.63405 + + 10 + NaN NaN 214655.6 NaN 22263 5743 28005 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28010 109.52 NaN 986680 35 0 67637 0.327 + 31167 VVAMKKIRL 9 105 529.348794334817 1056.6830357364338 2 529.3477172851562 MULTI HCD FTMS 0 0 0 28009 260721.109375 0.49250490818051335 8 -0.09268951416015625 1 Unmodified _VVAMKKIRL_ ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1 4.3292370932331545 0.3181982124262546 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.66148 0 0 126.1441474656253 780.459286234139 906.6034336997643 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.66148 + + 79 + NaN NaN 249851.9 NaN 22264 5744 28009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28011 109.52 NaN 822530 35 0 100980 0.261 + 5632 FMKVVKPK 8 88 488.80489735844816 NaN 0 488.8050842285156 PEAK HCD FTMS 0 0 0 28009 124679.890625 0.4440395844826851 6 -0.0789794921875 2 Unmodified _FMKVVKPK_ ENSG00000148655|ENST00000611255|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;nc|ENSG00000148655|Q9H2I8|LRMDA 2.577480529830294 0.38822285293237185 2 S 1 8 6.9897 0 0 0.71645 0 0 187.15767867564506 698.3656320300489 885.523310705694 0 0 0 0 0 0 0 0 0 S 0.71645 - 2 + NaN NaN 219976.6 NaN 22265 5744 28009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28013 109.53 NaN 2426500 35 0 389350 0.327 + 15045 LLRPGARK 8 96 455.800832063039 909.5871111928781 2 455.80084228515625 MULTI HCD FTMS 0 0 0 28012 766908.4375 0.9195342218928929 1 -0.01573944091796875 1 Unmodified _LLRPGARK_ REV__ENSG00000174197|ENST00000703841|MGA;REV__MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;REV__nc|ENSG00000174197|Q8IWI9-3|MGA;REV__nc|ENSG00000174197|Q8IWI9|MGA 5.760428011301431 0.5334459684533844 2 {I|L} 1 -1 13.099 0 0 1.4401 0 0 778.4926267952203 0 778.4926267952203 0 7.614393726401687 0 0 0 0 0 0 0 {I|L} 1.4401 + + 42 + NaN NaN 401126 NaN 22266 5745 28012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28014 109.53 NaN 825890 35 0 113470 0.261 -1 0 97 524.3609614248343 1046.7073699164685 2 524.3609619140625 MULTI HCD FTMS 0 0 0 28012 330899.71875 0.5215638832071832 3 -0.04746246337890625 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.4949 0 0 0.33389 0 0 394.3656427171547 502.2699370425067 896.6355797596614 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33389 - 77 + NaN NaN 220555.3 NaN 22267 5745 28012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28015 109.54 NaN 3135600 35 0 1373000 0.261 -1 PRVCQVQFLV 10 77 623.3427200861638 1244.6708872391275 2 623.343017578125 MULTI HCD FTMS 0 0 0 28012 551177.875 0.5758056588339885 -1 0.00943756103515625 3 Carbamidomethyl (C) _PRVC(Carbamidomethyl (C))QVQFLV_ nc|ENSG00000008083|Q92833-2|JARID2 3.5964929083625545 0.45626689593999237 2 Y 1 -1 2.7642 0 0 0.22208 0 0 849.4281070971612 229.15577112369377 1078.583878220855 0 0 0 0 0 0 0 0 0 Y 0.22208 - 46 + NaN NaN 583314.7 NaN 22268 5745 28012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28016 109.54 NaN 723370 35 0 53676 0.261 + 12200 KKRRMVKR 8 100 551.3609966286608 1100.7074403241215 2 551.3956298828125 MULTI HCD FTMS 0 0 0 28012 186595.75 0.3416275876968242 26 -0.215301513671875 4 Unmodified _KKRRMVKR_ REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF 2.302733041254933 0.5385759549224092 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.63502 0 0 126.14225211750995 824.4860786784465 950.6283307959565 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63502 + + 50 + NaN NaN 210299 NaN 22269 5745 28012 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28018 109.54 NaN 4140400 35 0 905430 0.327 -1 0 125 425.2871346582611 424.2798581916611 1 425.27447509765625 MULTI HCD FTMS 0 0 0 28017 440883.15625 0.7444683824723681 2 -0.0317230224609375 1 NaN NaN 2 K 1 -1 9.2082 0 0 2.1703 0 0 278.1707100977142 0 278.1707100977142 0 7.949127674554752 0 0 0 0 0 0 0 K 2.1703 - 10 + NaN NaN 673395.4 NaN 22270 5746 28017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28019 109.55 NaN 1752500 35 0 455170 0.261 + 11799 KEIFVFVIVVF 11 85 447.2738932626109 NaN 0 447.2873840332031 PEAK HCD FTMS 0 0 0 28017 35112.26953125 0.29947127088554965 -5 0.05146026611328125 2 Unmodified _KEIFVFVIVVF_ REV__ENSG00000122863|ENST00000373115|CHST3 1.4551175022131473 0.3379923941668102 2 S 1 -1 5.4846 0 0 0.61449 0 0 170.1036451780289 632.3592313731468 802.4628765511757 0 0 0 0 0 0 0 0 0 S 0.61449 - 3 + NaN NaN 372001.1 NaN 22271 5746 28017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28020 109.55 NaN 965770 35 0 136930 0.261 + 26436 STIIQLLLL 9 88 507.33463321078506 NaN 0 507.3342590332031 PEAK HCD FTMS 0 0 0 28017 482840.8125 0.6125975985203365 -9 0.08045196533203125 3 Unmodified _STIIQLLLL_ REV__ENSG00000144893|ENST00000687756|MED12L;REV__nc|ENSG00000144893|Q86YW9-4|MED12L;REV__nc|ENSG00000144893|Q86YW9|MED12L 4.75600775471527 0.27219989241163056 2 K 1 -1 6.9897 0 0 0.69024 0 0 422.303894865632 459.2203463190063 881.5242411846383 0 0 0 0 0 0 0 0 0 K 0.69024 - 24 + NaN NaN 237098.2 NaN 22272 5746 28017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28021 109.55 NaN 1016600 35 0 131190 0.261 + 15013 LLLLVVAVF 9 98 493.83482146119246 985.655089989185 2 493.8349304199219 MULTI HCD FTMS 0 0 0 28017 414489.3125 0.3902850990815352 -10 0.08769989013671875 4 Unmodified _LLLLVVAVF_ ENSG00000187244|ENST00000270233|BCAM 2.302733041254933 0.33356062215410776 2 {M(Oxidation (M))|F} 1 8 5.7268 0 0 0.58102 0 0 143.16917672405037 692.407677439781 835.5768541638313 0 0 0 0 0 0.3252574989159953 0 0 0 + {M(Oxidation (M))|F} 0.58102 + + 30 + NaN NaN 250294 NaN 22273 5746 28017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28022 109.56 NaN 3107100 35 0 1951900 0.261 + 23842 RRVLQNLKGQ 10 69 606.3689988297201 1210.7234447262401 2 606.3707275390625 MULTI HCD FTMS 0 0 0 28017 1026122.625 1 0 0 5 Unmodified _RRVLQNLKGQ_ ENSG00000196943|ENST00000267425|NOP9 3.2813086475875832 0.45793521633868084 2 {I|L}N 2 8 7.0783 0 0 0.58464 0 0 661.4217612319027 319.15427576236567 980.5760369942684 0 0 0 0 0 0 0 0 0 {I|L}N 0.58464 - 46 + NaN NaN 566611 NaN 22274 5746 28017 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28024 109.56 NaN 6092900 35 0 1025000 0.327 -1 0 187 411.77497468931534 821.5353964454307 2 411.7752685546875 MULTI HCD FTMS 0 0 0 28023 1671617.5 0.8945588463222884 -2 0.03505706787109375 1 NaN NaN 2 {I|L} 1 -1 8.0631 0 0 0.98146 0 0 690.4409120477729 0 690.4409120477729 0 5.298841025017449 0 0 0 0 0 0 0 {I|L} 0.98146 - 55 + NaN NaN 569117.8 NaN 22275 5747 28023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28025 109.57 NaN 1646100 35 0 211280 0.244 + 11715 KAVPRARL 8 84 455.800832063039 909.5871111928781 2 455.8008728027344 MULTI HCD FTMS 0 0 0 28023 541540.9375 0.6493153553121657 3 -0.03448486328125 2 Unmodified _KAVPRARL_ REV__ENST00000469820.1_1_X:102884578-102884773:+|nuORF 2.8892196856762586 0.5377058178582064 2 {I|L} 1 -1 14.604 0 0 1.6056 0 0 778.4925352424859 0 778.4925352424859 0 2.821357152192814 0 0 0 0 0 0 0 {I|L} 1.6056 + + 28 + NaN NaN 315513.9 NaN 22276 5747 28023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28026 109.57 NaN 1097900 35 0 161190 0.261 + 8038 GGRRRLRV 8 94 485.3108866599828 NaN 0 485.3214111328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _GGRRRLRV_ ENST00000526510.5_1_11:67166244-67166426:-|nuORF 5.230669730166228 0.38822285293237185 2 A 1 8 6.9897 0 0 0.72162 0 0 202.15289220425637 692.407209252479 894.5601014567353 0 0 0 0 0 0 0 0 0 A 0.72162 - 8 + NaN NaN 254310.7 NaN 22277 5747 28023 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28028 109.58 NaN 1338900 35 0 125920 0.327 + 12613 KVLCAPGK 8 75 408.243427942518 814.472302951836 2 408.243408203125 MULTI HCD FTMS 0 0 0 28027 628557.875 0.669290296836457 3 -0.028839111328125 1 Unmodified _KVLCAPGK_ REV__chr10:119849453-119853050|138|14.98|0.71|4.4|-|2|None,MCMBP|1;REV__ENSG00000197771|ENST00000369077|MCMBP;REV__ENST00000360003.7_1_10:121607217-121608973:-|nuORF;REV__ENST00000495407.1_1_10:121602688-121616909:-|nuORF;REV__nc|ENSG00000197771|Q9BTE3-3|MCMBP;REV__nc|ENSG00000197771|Q9BTE3|MCMBP 2.577480529830294 0.5381683276125971 2 NC 2 -1 7.3206 0 0 0.89882 0 0 378.24189193862384 216.14740930728752 594.3893012459114 0 0 0 0 0 0.3252574989159953 0 0 0 NC 0.89882 - 38 + NaN NaN 292472.2 NaN 22278 5748 28027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28029 109.58 NaN 822670 35 0 217140 0.261 + 27860 TDPLPMARRL 10 79 585.3267194287332 1168.6388859242663 2 585.328369140625 MULTI HCD FTMS 0 0 0 28027 215879.09375 0.7302034890972582 1 -0.01270294189453125 2 Unmodified _TDPLPMARRL_ REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF;REV__ENST00000515762.5_1_5:10442078-10461472:+|nuORF 3.2813086475875832 0.45793521633868084 2 S[RP]S 4 -1 5.1503 0 0 0.44071 0 0 723.431444236525 0 723.431444236525 0 2.051368718728815 0 0 0 0 0 0 0 S[RP]S 0.44071 - 52 NaN NaN 212497.6 NaN 22279 5748 28027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28030 109.58 NaN 369170 35 0 98902 0.261 + 8052 GHKYRLIKH 9 59 576.3419408339477 1150.6693287346952 2 576.342041015625 MULTI HCD FTMS 0 0 0 28027 141158.65625 0.6584679547170691 1 -0.01270294189453125 3 Unmodified _GHKYRLIKH_ ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9-2|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772 1.844237919475145 0.33703635659052655 2 Q 1 9 1.9897 0 0 0.17292 0 0 647.3540038829359 372.2284811721047 1019.5824850550406 0 0 0 0 0 0 0 0 0 Q 0.17292 - 11 + NaN NaN 146075.9 NaN 22280 5748 28027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28032 109.59 NaN 1180500 35 0 436120 0.327 + -1 SLVAEKMKK 9 68 525.3048058001668 1048.5950586671336 2 525.3051147460938 MULTI HCD FTMS 0 0 0 28031 231120.515625 0.8460506308667588 1 -0.00937652587890625 1 Oxidation (M) _SLVAEKM(Oxidation (M))KK_ REV__ENST00000428729.1_1_6:3045620-3046031:+|nuORF 4.75600775471527 0.31496297302216103 2 Q 1 -1 5.4846 0 0 0.52304 0 0 396.2528299454214 521.2566622369749 917.5094921823963 0 0 0 0 0 0 0 0 0 Q 0.52304 - 11 + NaN NaN 267592.5 NaN 22281 5749 28031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28033 109.59 NaN 591560 35 0 114870 0.261 + 5454 FILIPKKRS 9 85 551.3609966286608 1100.7074403241215 2 551.3607788085938 MULTI HCD FTMS 0 0 0 28031 98131.3203125 0.17966307504787082 30 -0.21480560302734375 2 Unmodified _FILIPKKRS_ REV__ENSG00000183621|ENST00000436087|ZNF438;REV__nc|ENSG00000183621|Q7Z4V0-2|ZNF438;REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438;REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant 1.844237919475145 0.33703635659052655 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.63502 0 0 126.14277704472609 824.4845394058656 950.6273164505917 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.63502 + + 24 + NaN NaN 187283 NaN 22282 5749 28031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28035 109.6 NaN 905010 35 0 116500 0.326 + 30361 VLIIGILVF 9 106 493.83482146119246 985.655089989185 2 493.8347473144531 MULTI HCD FTMS 0 0 0 28034 415972.03125 0.3916812340765812 -6 0.0789794921875 1 Unmodified _VLIIGILVF_ ENSG00000089063|ENST00000342308|TMEM230;ENST00000530434.1_1_11:56457988-56458195:+|nuORF;nc|ENSG00000089063|Q96A57|TMEM230 0.6014990680409731 0.3464572424761564 2 K 1 9 5.9691 0 0 0.6056 0 0 637.4275642096912 217.10805689029533 854.5356210999865 0 0 0 0 0 0.5 0 0 0 K 0.6056 - 52 + NaN NaN 282286.8 NaN 22283 5750 28034 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28037 109.6 NaN 703080 35 0 93594 0.411 + 2057 DEHAKIELL 9 91 534.2910490748254 1066.5675452164508 2 534.2907104492188 MULTI HCD FTMS 0 0 0 28036 57248.57421875 0.2811967946143947 4 -0.03592681884765625 1 Unmodified _DEHAKIELL_ REV__APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;REV__ENSG00000120868|ENST00000551964|APAF1;REV__nc|ENSG00000120868|O14727-2|APAF1;REV__nc|ENSG00000120868|O14727-3|APAF1;REV__nc|ENSG00000120868|O14727-4|APAF1;REV__nc|ENSG00000120868|O14727-5|APAF1 3.944395688203298 0.32111559684428237 2 M 1 -1 4.481 0 0 0.42014 0 0 488.1935930158965 444.3108232418261 932.5044162577226 0 0 0 0 0 0.28872548999643577 0 0 0 M 0.42014 - 14 + NaN NaN 305590.4 NaN 22284 5751 28036 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28039 109.61 NaN 1743700 35 0 827750 0.327 + 28176 TKKLFRALST 10 62 582.8599419317941 1163.705330930388 2 582.8592529296875 MULTI HCD FTMS 0 0 0 28038 325681.90625 0.19215484768065005 -2 0.01371002197265625 1 Unmodified _TKKLFRALST_ REV__ENSG00000091536|ENST00000647165|MYO15A;REV__ENST00000583079.1_1_17:18023566-18025792:+|nuORF 3.2813086475875832 0.45793521633868084 2 N 1 -1 6.9897 0 0 0.60064 0 0 637.3453588618319 409.2943302963081 1046.6396891581398 0 0 0 0 0 0 0 0 0 N 0.60064 - 10 + NaN NaN 369399.3 NaN 22285 5752 28038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28040 109.62 NaN 471780 35 0 62816 0.261 + 15012 LLLLQIRKA 9 75 534.3687749025606 1066.7229968719212 2 534.3690185546875 MULTI HCD FTMS 0 0 0 28038 118742.7109375 0.3301965128760213 38 -0.2705078125 2 Unmodified _LLLLQIRKA_ ENST00000451554.1_1_2:159145303-159312956:-|nuORF 1.844237919475145 0.33703635659052655 2 H 1 9 1.9897 0 0 0.18652 0 0 414.418889818594 512.2314547174436 926.6503445360377 0 0 0 0 0 0 0 0 0 H 0.18652 - 10 + NaN NaN 161869.3 NaN 22286 5752 28038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28041 109.62 NaN 433540 35 0 33507 0.261 + 12520 KRSHKTALR 9 80 548.8362835168073 1095.6580141004144 2 548.834716796875 MULTI HCD FTMS 0 0 0 28038 41381.015625 0.2846667641931381 1 -0.01245880126953125 3 Unmodified _KRSHKTALR_ REV__ENSG00000158748|ENST00000289753|HTR6 6.723162845929126 0.3000504726104499 2 {I|L} 1 -1 6.9897 0 0 0.63795 0 0 331.16425434614297 648.3793429010374 979.5435972471803 0 0 0 0 0 0 0 0 0 {I|L} 0.63795 + + 26 + NaN NaN 150298.9 NaN 22287 5752 28038 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28043 109.62 NaN 363780 35 0 38737 0.327 + 23959 RVGPPPKRA 9 53 489.30420360281016 NaN 0 489.3037109375 PEAK HCD FTMS 0 0 0 28042 137673.53125 0.3814375194590969 2 -0.01651763916015625 1 Unmodified _RVGPPPKRA_ ENSG00000170748|ENST00000306904|RBMXL2 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 145971.2 NaN 22288 5753 28042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28044 109.63 NaN 361560 35 0 172070 0.261 + 22077 QHLKGLTKTK 10 44 577.3569341415661 1152.699315349932 2 577.3574829101562 MULTI HCD FTMS 0 0 0 28042 223934.796875 0.38621254687451323 -2 0.0194091796875 2 Unmodified _QHLKGLTKTK_ REV__nc|ENSG00000173120|Q9Y2K7-5|KDM2A 1.1933415558491238 0.46898715808974617 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 150667.2 NaN 22289 5753 28042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28046 109.63 NaN 403980 35 0 212460 0.411 + 23462 RLQIVVRKH 9 44 574.8708020877041 1147.727051242208 2 574.8713989257812 MULTI HCD FTMS 0 0 0 28045 407123.71875 0.7834261314568891 -2 0.02178192138671875 1 Unmodified _RLQIVVRKH_ REV__ENSG00000170537|ENST00000304381|TMC7;REV__nc|ENSG00000170537|Q7Z402-2|TMC7 2.0597508629832335 0.3354026079994024 2 P 1 -1 1.5938 0 0 0.13887 0 0 592.5105117908394 455.12970911197505 1047.6402209028145 0 0 0 0 0 0 0 0 0 P 0.13887 - 2 + NaN NaN 216412.5 NaN 22290 5754 28045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28066 109.75 NaN 1598300 35 0 183970 0.327 -1 0 110 463.3089074354 924.6032619376 2 463.3094787597656 MULTI HCD FTMS 0 0 0 28065 1104516.75 0.5003890471504759 1 -0.01201629638671875 1 NaN NaN 2 K 1 -1 9.3361 0 0 1.0097 0 0 334.25297035506406 459.22031580142817 793.4732861564922 0 0 0 0 0 0.5356668758921829 0 0 0 K 1.0097 - 29 + NaN NaN 341466 NaN 22291 5773 28065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28067 109.76 NaN 1528500 35 0 179680 0.261 -1 0 91 485.32170036226677 968.6288477913336 2 485.32183837890625 MULTI HCD FTMS 0 0 0 28065 436980 0.360270227404195 1 -0.01201629638671875 2 NaN NaN 2 PD 2 -1 6.5676 0 0 0.67803 0 0 422.3037720845953 331.22765522636405 753.5314273109593 0 0 0 0 0 0.3807196863200844 0 0.3252574989159953 0 PD 0.67803 - 84 + NaN NaN 328830.3 NaN 22292 5773 28065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28068 109.76 NaN 726930 35 0 119860 0.261 -1 0 75 402.29033999045066 NaN 0 402.29058837890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 NaN NaN 2 Y 1 -1 4.3971 0 0 0.54788 0 0 256.24180849445787 380.2290438287719 636.4708523232298 0 0 0 0 0 0.2614393726401688 0 0 0 Y 0.54788 - 2 + NaN NaN 200825.1 NaN 22293 5773 28065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28071 109.77 NaN 1289900 35 0 165610 0.411 + 30362 VLIIGILVF 9 158 493.8350499910841 985.6555470489682 2 493.8365173339844 MULTI HCD FTMS 0 0 0 28070 440359.625 0.5257514531050789 -2 0.0188446044921875 1 Unmodified _VLIIGILVF_ ENSG00000089063|ENST00000342308|TMEM230;ENST00000530434.1_1_11:56457988-56458195:+|nuORF;nc|ENSG00000089063|Q96A57|TMEM230 0.6014990680409731 0.3464572424761564 2 D 1 9 8.9794 0 0 0.91101 0 0 650.4982868907526 217.10801111392814 867.6062980046808 0 0 0 0 0 0.5 0 0 0 D 0.91101 - 126 + NaN NaN 481925.8 NaN 22294 5775 28070 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28073 109.78 NaN 901470 35 0 94307 0.349 + 449 ALLTGSLLIL 10 110 507.33496961254843 1012.6553862918969 2 507.3355712890625 MULTI HCD FTMS 0 0 0 28072 443186.1875 0.8204674074692029 -7 0.05022430419921875 1 Unmodified _ALLTGSLLIL_ tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1 1.6526216038709556 0.46655611578153744 2 W 1 10 7.3464 0 0 0.72546 0 0 104.16023521237453 719.4060936496311 823.5663288620057 0 0 0 0 0 0.4247425010840047 0 0 0 W 0.72546 - 69 + NaN NaN 319954.4 NaN 22295 5776 28072 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28075 109.79 NaN 2371200 35 0 493230 0.327 -1 0 135 449.80872006329207 897.6028871933842 2 449.8091735839844 MULTI HCD FTMS 0 0 0 28074 485096.40625 0.46821630141490855 -23 0.1549072265625 1 NaN NaN 2 K 1 -1 9.6777 0 0 1.0782 0 0 751.4940442752186 0 751.4940442752186 0 0.8042564624947257 0 0 0 0 0 0 0 K 1.0782 - 49 + NaN NaN 583508.8 NaN 22296 5777 28074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28077 109.79 NaN 695730 35 0 70915 0.327 + 8238 GSLLAELAPLL 11 107 548.8354983979642 1095.6564438627283 2 548.8356323242188 MULTI HCD FTMS 0 0 0 28076 482855.53125 0.8109239300431824 1 -0.00872039794921875 1 Unmodified _GSLLAELAPLL_ REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF 5.296884461304476 0.39569033063702824 2 {M(Oxidation (M))|F} 1 -1 4.6041 0 0 0.42021 0 0 121.09432432631145 824.4846036698068 945.5789279961183 0 0 0 0 0 0.3494850021680094 0 0 0 {M(Oxidation (M))|F} 0.42021 - 56 + NaN NaN 196937.9 NaN 22297 5778 28076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28078 109.8 NaN 1006000 35 0 104090 0.261 + 28190 TKPLAPLLAE 10 103 526.8219754724943 1051.6293980117885 2 526.8228149414062 MULTI HCD FTMS 0 0 0 28076 291406.65625 0.42463988993713697 -1 0.00630950927734375 2 Unmodified _TKPLAPLLAE_ REV__ENSG00000166682|ENST00000299882|TMPRSS5;REV__ENST00000538091.1_1_11:113569612-113570777:-|nuORF 8.155526934196011 0.43213520406898465 2 P 1 -1 4.3361 0 0 0.41232 0 0 646.4029804427904 305.1597078912719 951.5626883340624 0 0 0 0 0 0.2742275032520141 0 0 0 P 0.41232 + + 35 + NaN NaN 244347.2 NaN 22298 5778 28076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28080 109.8 NaN 637350 35 0 129120 0.411 -1 0 114 480.33497060833747 958.655388283475 2 480.3349609375 MULTI HCD FTMS 0 0 0 28079 613848 0.7267387315579715 -10 0.07193756103515625 1 NaN NaN 2 ATQ 3 -1 7.9981 0 0 0.8343 0 0 324.2796905108766 331.2265719049438 655.5062624158204 0 0 0 0 0 0 0 0 0.3807196863200844 ATQ 0.8343 - 71 + NaN NaN 282011.5 NaN 22299 5779 28079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28082 109.81 NaN 1014700 35 0 159910 0.329 -1 0 134 441.2955527811084 880.5765526290169 2 441.2955627441406 MULTI HCD FTMS 0 0 0 28081 768682.5 0.3830719888489476 -39 0.31790924072265625 1 NaN NaN 2 K 1 -1 11.259 0 0 1.2786 0 0 734.4674503114372 0 734.4674503114372 0 2.0508723254452477 0 0 0 0 0 0 0 K 1.2786 - 83 + NaN NaN 318945.4 NaN 22300 5780 28081 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28084 109.82 NaN 1128700 35 0 103880 0.327 + 414 AKLPLEKPL 9 134 504.82591400317756 NaN 0 504.80926513671875 PEAK HCD FTMS 0 0 0 28083 229720.203125 1 0 0 1 Unmodified _AKLPLEKPL_ REV__ENST00000556601.5_1_2:27844560-27844656:+|nuORF 6.723162845929126 0.26266733336404485 2 A 1 -1 3.0989 0 0 0.30755 0 0 149.11851127832625 784.4488259873564 933.5673372656827 0 0 0 0 0 0 0 0 0 A 0.30755 + + 10 + NaN NaN 295990.2 NaN 22301 5781 28083 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28087 109.83 NaN 869080 35 0 73931 0.411 + 23979 RVRLPLLF 8 133 507.33496961254843 1012.6553862918969 2 507.3340148925781 MULTI HCD FTMS 0 0 0 28086 540163.0625 1 0 0 1 Unmodified _RVRLPLLF_ REV__ENST00000361264.8_1_9:34126412-34126766:-|nuORF 0.7936320650641473 0.540814922690045 2 [RN][HV]K 5 -1 9.41 0 0 0.92924 0 0 0 375.2552640649163 375.2552640649163 2.420299789533404 0 0 0 0 0 1.6989700043360187 0 0 [RN][HV]K 0.92924 - 139 NaN NaN 369122.9 NaN 22302 5783 28086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28089 109.84 NaN 1400800 35 0 145540 0.327 + 30363 VLIIGILVF 9 121 493.8350499910841 985.6555470489682 2 493.8352355957031 MULTI HCD FTMS 0 0 0 28088 504410.03125 0.6022221199104385 7 -0.052093505859375 1 Unmodified _VLIIGILVF_ ENSG00000089063|ENST00000342308|TMEM230;ENST00000530434.1_1_11:56457988-56458195:+|nuORF;nc|ENSG00000089063|Q96A57|TMEM230 0.6014990680409731 0.3464572424761564 2 D 1 9 10.089 0 0 1.0235 0 0 650.4981506640057 217.10801111392814 867.6061617779338 0 0 0 0 0 0.3807196863200844 0 0.2302046884880938 0 D 1.0235 - 58 + NaN NaN 318552.9 NaN 22303 5784 28088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28090 109.84 NaN 790600 35 0 124800 0.261 -1 0 97 502.34786077609033 1002.6811686189807 2 502.3475341796875 MULTI HCD FTMS 0 0 0 28088 558718.125 1 0 0 2 NaN NaN 2 M 1 -1 3.9794 0 0 0.39688 0 0 536.4828176441745 332.13495813541255 868.617775779587 0 0 0 0 0 0 0 0 0 M 0.39688 - 44 + NaN NaN 208012.9 NaN 22304 5784 28088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28091 109.84 NaN 1085700 35 0 80271 0.261 + 30398 VLNAPLPQL 9 120 482.79546410935814 963.5763752855163 2 482.795654296875 MULTI HCD FTMS 0 0 0 28088 417066.5625 0.5810841323779137 -7 0.04839324951171875 3 Unmodified _VLNAPLPQL_ ENST00000480424.6_1_16:630665-633032:+|nuORF 4.3292370932331545 0.3181982124262546 2 K 1 9 11.594 0 0 1.2032 0 0 817.4677612491867 0 817.4677612491867 0 6.1928031367991565 0 0 0 0 0 0 0 K 1.2032 - 95 + NaN NaN 257299.4 NaN 22305 5784 28088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28094 109.85 NaN 699380 35 0 139190 0.367 + 10738 IRHLKLPVKRL 11 94 458.31214271797256 NaN 0 458.3215637207031 PEAK HCD FTMS 0 0 0 28093 70591.03125 0.36531714598531884 5 -0.03279876708984375 1 Unmodified _IRHLKLPVKRL_ REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF 0.4545168274142398 0.3408308101233591 2 P 1 -1 4.6041 0 0 0.50339 0 0 395.28391717031883 419.2433260553344 814.5272432256533 0 0 0 0 0 0 0 0 0 P 0.50339 + + 22 + NaN NaN 279409.9 NaN 22306 5786 28093 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28096 109.86 NaN 851210 35 0 64538 0.411 + 30309 VKRVKKKK 8 144 507.36903625662256 NaN 0 507.36895751953125 PEAK HCD FTMS 0 0 0 28095 73961.484375 0.17374487826202817 7 -0.0487823486328125 1 Unmodified _VKRVKKKK_ REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF 0 0.38822285293237185 2 KQN 3 -1 7.167 0 0 0.70769 0 0 422.3727406353816 217.10787378482658 639.4806144202082 0 0 0 0 0 0 0 0 0 KQN 0.70769 - 90 + NaN NaN 355499 NaN 22307 5787 28095 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28099 109.87 NaN 1664100 35 0 240350 0.327 -1 0 134 463.3089074354 924.6032619376 2 463.3087158203125 MULTI HCD FTMS 0 0 0 28098 792280.125 0.3589337118020256 17 -0.11328125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 6.9897 0 0 0.75597 0 0 126.1427003804135 648.3809476885679 774.5236480689814 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.75597 - 62 + NaN NaN 440901.9 NaN 22308 5789 28098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28101 109.88 NaN 1085100 35 0 143590 0.4 -1 0 133 485.32170036226677 968.6288477913336 2 485.3221435546875 MULTI HCD FTMS 0 0 0 28100 391756.75 0.32298570508862734 18 -0.1201019287109375 1 NaN NaN 2 A 1 -1 6.9897 0 0 0.72161 0 0 202.17425433027284 692.4074712374636 894.5817255677364 0 0 0 0 0 0 0 0 0 A 0.72161 - 55 + NaN NaN 411901.2 NaN 22309 5790 28100 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28104 109.89 NaN 4363300 35 0 2839700 0.327 + 15010 LLLLLPWPM 9 74 548.3362669526291 NaN 0 548.3184204101562 PEAK HCD FTMS 0 0 0 28103 207545.1875 0.8894120338031549 2 -0.01534271240234375 1 Unmodified _LLLLLPWPM_ REV__ENSG00000182704|ENST00000333090|TSKU 2.302733041254933 0.2840881193086663 2 C 1 -1 1.7827 0 0 0.16286 0 0 500.3712647962371 488.2533358209594 988.6246006171965 0 0 0 0 0 0 0 0 0 C 0.16286 - 1 + NaN NaN 749473.6 NaN 22310 5792 28103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28105 109.9 NaN 1140100 35 0 93273 0.261 + 9983 IEKILFVF 8 108 504.8090727398036 1007.6035925464072 2 504.80792236328125 MULTI HCD FTMS 0 0 0 28103 262944.84375 0.2836658925800011 12 -0.08068084716796875 2 Unmodified _IEKILFVF_ tr|U7SJI5|U7SJI5_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02057PE=3SV=1 5.230669730166228 0.5342319408533849 2 {M(Oxidation (M))|F} 1 7 4.2082 0 0 0.41764 0 0 121.08948717463689 736.4336895109093 857.5231766855462 0 0 0 0 0 0.3494850021680094 0 0 0 + {M(Oxidation (M))|F} 0.41764 + + 254 + NaN NaN 263606.7 NaN 22311 5792 28103 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28107 109.9 NaN 1437600 35 0 130660 0.327 + 25791 SLLSVRVF 8 116 460.7825801817078 919.5506074302156 2 460.78240966796875 MULTI HCD FTMS 0 0 0 28106 545543.4375 0.7029465191133399 -3 0.02217864990234375 1 Unmodified _SLLSVRVF_ ENSG00000154928|ENST00000398015|EPHB1;EPHB1|p.T584Kfs*8|1|0.08|ENSG00000154928|chr3:135166998-135166998|C/-|frameshift_variant 4.75600775471527 0.5349361699807423 2 {M(Oxidation (M))|F} 1 7 6.1536 0 0 0.66919 0 0 121.08785215853432 648.3811739557249 769.4690261142592 0 0 0 0 0 0.3054621874040891 0 0 0 + {M(Oxidation (M))|F} 0.66919 + + 62 + NaN NaN 277837.1 NaN 22312 5793 28106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28111 109.92 NaN 2166000 35 0 350690 0.327 -1 0 98 449.80872006329207 897.6028871933842 2 449.8084411621094 MULTI HCD FTMS 0 0 0 28110 567996.8125 0.5482319871632884 -4 0.0278778076171875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.3615 0 0 0.59731 0 0 143.16885301181202 604.3535860650999 747.522439076912 0 0 0 0 0 0.28872548999643577 0 0 0 {M(Oxidation (M))|F} 0.59731 - 26 + NaN NaN 344110.8 NaN 22313 5796 28110 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28113 109.93 NaN 1142100 35 0 152230 0.327 -1 0 100 440.28448464281047 439.2772081762105 1 441.2952575683594 MULTI HCD FTMS 0 0 0 28112 111900.046875 0.6406838359533017 -2 0.01232147216796875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 14 NaN NaN 247895.7 NaN 22314 5797 28112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28114 109.93 NaN 672730 35 0 151680 0.261 -1 0 83 480.33497060833747 958.655388283475 2 480.3350524902344 MULTI HCD FTMS 0 0 0 28112 357438.71875 0.423174077416692 8 -0.0528564453125 2 NaN NaN 2 K 1 -1 3.4949 0 0 0.36456 0 0 496.3017943887468 331.2268160455688 827.5286104343156 0 0 0 0 0 0 0 0 0 K 0.36456 - 10 + NaN NaN 201775.8 NaN 22315 5797 28112 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28120 109.96 NaN 1129100 35 0 142850 0.327 + 12437 KPVSVPLKP 9 120 482.8126197577722 963.6106865823444 2 482.79620361328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KPVSVPLKP_ ENSG00000147576|ENST00000396623|ADHFE1;nc|ENSG00000285791|Q8IWW8-2|ADHFE1;nc|ENSG00000285791|Q8IWW8-3|ADHFE1;nc|ENSG00000285791|Q8IWW8-4|ADHFE1 3.5964929083625545 0.32375295897743744 2 Q 1 9 3.4949 0 0 0.36268 0 0 311.2683676587987 521.2566012018186 832.5249688606173 0 0 0 0 0 0 0 0 0 Q 0.36268 - 45 + NaN NaN 322890.8 NaN 22316 5802 28119 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28124 109.98 NaN 811380 35 0 174270 0.411 -1 0 101 458.32326597531653 914.6319790174331 2 458.32171630859375 MULTI HCD FTMS 0 0 0 28123 478922.5625 0.564116202286321 -8 0.0528564453125 1 NaN NaN 2 N 1 -1 4.732 0 0 0.51736 0 0 351.28048429364907 446.2797945611938 797.5602788548429 0 0 0 0 0 0 0 0 0.2742275032520141 N 0.51736 - 33 + NaN NaN 337568.4 NaN 22317 5805 28123 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28135 110.04 NaN 1424700 35 0 410940 0.327 -1 0 98 419.31575903096314 418.30848256436315 1 419.3157958984375 MULTI HCD FTMS 0 0 0 28134 922036.0625 0.40805011672896896 -4 0.02478790283203125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 9 NaN NaN 306891.4 NaN 22318 5815 28134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28136 110.05 NaN 1109300 35 0 88464 0.261 + 30962 VRPPPTPL 8 120 438.76883656733526 875.5231202014705 2 438.7694396972656 MULTI HCD FTMS 0 0 0 28134 186510.90625 0.37255651270041923 12 -0.0776214599609375 2 Unmodified _VRPPPTPL_ ENST00000293379.8_1_12:54813056-54813194:-|nuORF 2.302733041254933 0.5385759549224092 2 W 1 8 3.4949 0 0 0.39917 0 0 143.1328771841051 543.3023775690061 686.4352547531112 0 0 0 0 0 0 0 0 0 W 0.39917 - 49 + NaN NaN 250631.5 NaN 22319 5815 28134 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28138 110.05 NaN 1292300 35 0 166060 0.327 + 12573 KTHIKALA 8 132 441.2840098339175 NaN 0 441.2953796386719 PEAK HCD FTMS 0 0 0 28137 42748.71875 0.16713550721893086 -6 0.0397186279296875 1 Unmodified _KTHIKALA_ ENSG00000173175|ENST00000462833|ADCY5;nc|ENSG00000173175|O95622-2|ADCY5 4.75600775471527 0.38822285293237185 2 A 1 7 6.9897 0 0 0.79378 0 0 202.15070203220347 604.3546998838729 806.5054019160764 0 0 0 0 0 0 0 0 0 + A 0.79378 + + 12 + NaN NaN 343756 NaN 22320 5816 28137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28204 110.46 NaN 950570 35 0 552290 0.411 -1 0 96 580.4162706153064 NaN 0 580.416015625 PEAK HCD FTMS 0 0 0 28203 249092.8125 0.74524696414265 -9 0.05583953857421875 1 NaN NaN 2 G 1 -1 5.4846 0 0 0.47329 0 0 216.25758765467873 882.5281613002339 1098.7857489549126 0 0 0 0 0 0 0 0 0 G 0.47329 - 10 + NaN NaN 380988.9 NaN 22321 5881 28203 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28215 110.52 NaN 625780 35 0 54533 0.411 + 30284 VKKKKKKKG 9 104 536.3898813878142 NaN 0 536.39013671875 PEAK HCD FTMS 0 0 0 28214 196172.265625 0.48756564453486795 -9 0.05638885498046875 1 Unmodified _VKKKKKKKG_ REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF 0 0.29524684227089293 2 A 1 -1 5.4846 0 0 0.51221 0 0 216.25794013131582 780.4588292766641 996.7167694079799 0 0 0 0 0 0 0 0 0 A 0.51221 - 6 + NaN NaN 279703.8 NaN 22322 5891 28214 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28217 110.53 NaN 816900 35 0 90787 0.377 + -1 SRLWCCYMKWC 11 107 536.89150495293 NaN 0 536.8911743164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C),Oxidation (M) _SRLWC(Carbamidomethyl (C))C(Carbamidomethyl (C))YM(Oxidation (M))KWC_ REV__ENST00000608756.5_1_3:122145799-122145940:+|nuORF 0 0.34212014346876374 2 M 1 -1 5.4846 0 0 0.51173 0 0 638.5330364017974 299.16791711978755 937.700953521585 0 0 0 0 0 0 0 0 0 M 0.51173 + + 7 + NaN NaN 315471.6 NaN 22323 5892 28216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28229 110.6 NaN 604000 35 0 47974 0.411 + 30285 VKKKKKKKG 9 106 536.3898813878142 NaN 0 536.3895263671875 PEAK HCD FTMS 0 0 0 28228 234990.46875 0.5840442276109564 3 -0.019775390625 1 Unmodified _VKKKKKKKG_ REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF 0 0.29524684227089293 2 N 1 -1 5.4846 0 0 0.51221 0 0 216.2575545002963 737.4287393431263 953.6862938434226 0 0 0 0 0 0 0 0 0 N 0.51221 - 13 + NaN NaN 277554.1 NaN 22324 5903 28228 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28237 110.64 NaN 679760 35 0 292000 0.411 -1 0 94 580.4162696924465 NaN 0 580.4165649414062 PEAK HCD FTMS 0 0 0 28236 152504.859375 0.3184881159097953 -12 0.075775146484375 1 NaN NaN 2 G 1 -1 5.4846 0 0 0.47329 0 0 216.25698425120373 882.5271942599262 1098.78417851113 0 0 0 0 0 0 0 0 0 G 0.47329 - 12 + NaN NaN 312480.8 NaN 22325 5910 28236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28241 110.66 NaN 1828600 35 0 1250600 0.41 + -1 MHFLYCTMM 9 89 625.2470758678618 NaN 0 625.2481689453125 PEAK HCD FTMS 0 0 0 28240 139196.765625 0.5264145859370153 4 -0.02713775634765625 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))HFLYC(Carbamidomethyl (C))TMM_ REV__ENSG00000196218|ENST00000359596|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3;REV__nc|ENSG00000196218|P21817-2|RYR1;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__nc|ENSG00000198838|Q15413-2|RYR3 0.6014990680409731 0.29233206172879045 2 G 1 -1 6.9897 0 0 0.55986 0 0 216.83766950551654 971.5821334317403 1188.419802937257 0 0 0 0 0 0 0 0 0 G 0.55986 - 9 + NaN NaN 654435.4 NaN 22326 5913 28240 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28244 110.68 NaN 457650 35 0 54635 0.411 + 15301 LPALLLLLLLR 11 89 624.4427464341853 NaN 0 624.4427490234375 PEAK HCD FTMS 0 0 0 28243 279636.8125 0.6603004623900317 -2 0.0135650634765625 1 Unmodified _LPALLLLLLLR_ ENSG00000134470|ENST00000379977|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000134470|Q13261-4|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000134470|Q13261-8|IL15RA;nc|ENSG00000134470|Q13261-9|IL15RA 0.3070304955306653 0.3412491863730806 2 AK 2 10 4.3804 0 0 0.35131 0 0 480.4161192338018 564.2971285455686 1044.7132477793705 0 0 0 0 0 0 0 0 0.3807196863200844 AK 0.35131 - 14 + NaN NaN 247729.3 NaN 22327 5915 28243 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28252 110.72 NaN 2371000 35 0 1455800 0.327 -1 0 61 594.4732416901753 593.4659652235753 1 594.4728393554688 MULTI HCD FTMS 0 0 0 28251 1538274.125 0.4516507823095721 -5 0.0312042236328125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.67054 0 0 92.36908519603465 351.03888879947505 443.4079739955097 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.67054 - 1 + NaN NaN 448677.5 NaN 22328 5922 28251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28253 110.72 NaN 759530 35 0 56271 0.261 + 12217 KKVKKGKKK 9 92 536.3898989843208 1070.7652450354415 2 536.3898315429688 MULTI HCD FTMS 0 0 0 28251 271038.625 0.6778151049170307 -11 0.07134246826171875 2 Unmodified _KKVKKGKKK_ REV__ENSG00000170807|ENST00000458573|LMOD2 0 0.3510170533115441 2 A 1 -1 3.9794 0 0 0.37164 0 0 216.25812050696476 780.4592582161482 996.7173787231129 0 0 0 0 0 0 0 0 0 A 0.37164 - 10 + NaN NaN 221606.7 NaN 22329 5922 28251 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28255 110.73 NaN 2155800 35 0 567460 0.326 -1 0 68 459.83625020331664 917.6579474734333 2 459.8361511230469 MULTI HCD FTMS 0 0 0 28254 890043.5 0.6103299117670656 -2 0.01506805419921875 1 NaN NaN 2 K 1 -1 13.979 0 0 1.5234 0 0 771.5492571431583 0 771.5492571431583 0 11.505149978319906 0 0 0 0 0 0 0 K 1.5234 - 23 + NaN NaN 401745.2 NaN 22330 5923 28254 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28257 110.74 NaN 1097500 35 0 403700 0.411 -1 0 88 586.4836885600475 585.4764120934475 1 586.484619140625 MULTI HCD FTMS 0 0 0 28256 642474.4375 0.6986445416801208 -1 0.00665283203125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 1.9897 0 0 0.33984 0 0 151.1885530620006 284.22268963184405 435.41124269384466 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33984 - 5 + NaN NaN 433199 NaN 22331 5924 28256 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28259 110.74 NaN 2637900 35 0 742730 0.326 -1 0 65 459.83625020331664 917.6579474734333 2 459.8362731933594 MULTI HCD FTMS 0 0 0 28258 1458299 1 0 0 1 NaN NaN 2 Y 1 -1 2.2185 0 0 0.24176 0 0 144.1912249165958 607.3854464166624 751.5766713332582 0 0 0 0 0 0 0 0 0 Y 0.24176 - 4 + NaN NaN 480688.7 NaN 22332 5925 28258 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28262 110.76 NaN 12776000 35 0 2990100 0.327 -1 0 70 450.8499631132786 899.6853732933572 2 450.8499450683594 MULTI HCD FTMS 0 0 0 28261 7185517.5 1 0 0 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 9.732 0 0 1.0817 0 0 127.22070266469684 609.4152987059568 736.6360013706537 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 1.0817 - 10 + NaN NaN 629098.4 NaN 22333 5927 28261 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28265 110.77 NaN 615560 35 0 61027 0.411 -1 0 87 624.4429396971219 623.4356632305219 1 624.4428100585938 MULTI HCD FTMS 0 0 0 28264 376417.3125 0.8541382508883096 3 -0.020416259765625 1 NaN NaN 2 S 1 -1 11.906 0 0 1.9098 0 0 182.1943435057156 351.1810396783813 533.3753831840969 0 0 0 0 0 0.5 0 0.3807196863200844 0 S 1.9098 - 5 + NaN NaN 272530.8 NaN 22334 5929 28264 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28268 110.78 NaN 694490 35 0 107180 0.411 -1 0 90 580.4162696924465 NaN 0 580.416259765625 PEAK HCD FTMS 0 0 0 28267 450540.65625 0.940900147955205 9 -0.059478759765625 1 NaN NaN 2 V 1 -1 4.3862 0 0 0.37851 0 0 480.4127873323553 576.3303316705686 1056.743119002924 0 0 0 0 0 0.23965182871044374 0 0 0 V 0.37851 - 8 + NaN NaN 298372.7 NaN 22335 5931 28267 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28271 110.8 NaN 868270 35 0 161030 0.411 + 12609 KVKIIRNKK 9 84 563.8915310561686 NaN 0 563.8912963867188 PEAK HCD FTMS 0 0 0 28270 137362.8125 0.604850946948861 -1 0.00677490234375 1 Unmodified _KVKIIRNKK_ ENSG00000106648|ENST00000392800|GALNTL5 0.5247636613948944 0.2927039108006614 2 K 1 8 4.6041 0 0 0.40897 0 0 579.4440595715183 415.19439611219883 994.6384556837172 0 0 0 0 0 0 0 0 0 + K 0.40897 + + 5 + NaN NaN 362052.5 NaN 22336 5933 28270 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28275 110.82 NaN 1362300 35 0 273350 0.33 -1 0 111 461.3437412215529 460.3364647549529 1 461.32989501953125 MULTI HCD FTMS 0 0 0 28274 121359.3125 0.19022592395426385 -12 0.0794677734375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 385529.6 NaN 22337 5936 28274 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28277 110.82 NaN 759360 35 0 215330 0.412 + 28253 TLLKLPVSLRR 11 78 648.4323801794642 NaN 0 648.431884765625 PEAK HCD FTMS 0 0 0 28276 185572.125 0.4452654125599724 -1 0.00618743896484375 1 Unmodified _TLLKLPVSLRR_ L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|253|2|anti-sense 2.498486711656943 0.3350326561941647 2 Y 1 11 2.4743 0 0 0.19108 0 0 646.4082041071721 482.3563631647094 1128.7645672718816 0 0 0 0 0 0 0 0 0 Y 0.19108 - 11 + NaN NaN 343881.9 NaN 22338 5937 28276 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28298 110.95 NaN 2625600 35 0 1051900 0.327 -1 0 116 461.3437412215529 460.3364647549529 1 461.3302917480469 MULTI HCD FTMS 0 0 0 28297 257074.984375 0.4029548735970494 9 -0.05806732177734375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 8 NaN NaN 646397.8 NaN 22339 5957 28297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28302 110.97 NaN 493410 35 0 68107 0.411 + 16596 LVLLPLIIRVV 11 91 624.4426064810326 NaN 0 624.4431762695312 PEAK HCD FTMS 0 0 0 28301 296710.65625 0.583007522813593 -9 0.05681610107421875 1 Unmodified _LVLLPLIIRVV_ tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1 0.3070304955306653 0.3412491863730806 2 K 1 11 4.7539 0 0 0.38127 0 0 551.4400092493714 564.2982882135374 1115.7382974629088 0 0 0 0 0 0 0 0 0.3494850021680094 K 0.38127 - 20 + NaN NaN 258178 NaN 22340 5960 28301 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28304 110.97 NaN 1875200 35 0 419420 0.326 -1 0 78 470.35035736104356 938.6861617888871 2 470.34942626953125 MULTI HCD FTMS 0 0 0 28303 268619.375 0.2864164519775578 -46 0.29795074462890625 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.58428 0 0 216.25735777751578 648.3826133714304 864.6399711489462 0 0 0 0 0 0 0 0 0 A 0.58428 - 22 + NaN NaN 359669 NaN 22341 5961 28303 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28307 110.99 NaN 1378800 35 0 221490 0.364 + -1 FKRCDVVFEP 10 129 432.88521948759 NaN 0 432.8853454589844 PEAK HCD FTMS 0 0 0 28306 904668.5 0.33228118313776805 -11 0.07054901123046875 1 Carbamidomethyl (C) _FKRC(Carbamidomethyl (C))DVVFEP_ REV__ENSG00000142207|ENST00000382751|URB1 1.7422754331352037 0.33869314273211465 2 A 1 -1 6.9897 0 0 0.80922 0 0 185.35085987394365 604.3550509088499 789.7059107827936 0 0 0 0 0 0 0 0 0 A 0.80922 - 16 + NaN NaN 454456.8 NaN 22342 5963 28306 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28310 111 NaN 964290 35 0 87134 0.355 -1 0 99 496.3479626862295 495.3406862196295 1 497.3509826660156 MULTI HCD FTMS 0 0 0 28309 629590.375 0.5953785820723151 63 -0.451080322265625 1 NaN NaN 2 N 1 -1 0.9691 0 0 0.19564 0 0 167.14172489326074 211.13350855045158 378.2752334437123 0 0 0 0 0 0 0 0 0 N 0.19564 - 11 + NaN NaN 329608.6 NaN 22343 5965 28309 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28312 111.01 NaN 1878000 35 0 212020 0.327 -1 0 138 447.80334049198683 893.5921280507737 2 447.8033142089844 MULTI HCD FTMS 0 0 0 28311 551077.4375 0.69630553472478 -14 0.0897216796875 1 NaN NaN 2 A 1 -1 11.99 0 0 1.3417 0 0 127.13818859517887 692.4071697899403 819.5453583851192 0 0 0 0 0 0.5 0 0 0 A 1.3417 - 43 + NaN NaN 488027 NaN 22344 5966 28311 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28314 111.01 NaN 828740 35 0 90767 0.411 -1 0 117 492.3636825647935 982.7128121963871 2 492.3634948730469 MULTI HCD FTMS 0 0 0 28313 337097.875 0.44093320877643777 -41 0.262786865234375 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.5581 0 0 216.25785985913984 692.4068407903443 908.6647006494841 0 0 0 0 0 0 0 0 0 A 0.5581 - 37 + NaN NaN 341581.7 NaN 22345 5967 28313 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28324 111.07 NaN 734340 35 0 60451 0.411 -1 0 120 492.3636825647935 982.7128121963871 2 492.36309814453125 MULTI HCD FTMS 0 0 0 28323 595928.75 0.7794910482293358 -32 0.20316314697265625 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.5581 0 0 216.25777810664584 692.407366166783 908.665144273429 0 0 0 0 0 0 0 0 0 A 0.5581 - 29 + NaN NaN 330709 NaN 22346 5976 28323 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28327 111.08 NaN 2213600 35 0 326180 0.327 -1 0 111 461.33978271330665 460.33250624670666 1 461.330078125 MULTI HCD FTMS 0 0 0 28326 98268.6171875 0.3622029179915553 6 -0.04418182373046875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 10 NaN NaN 468203.5 NaN 22347 5978 28326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28329 111.09 NaN 1371000 35 0 231000 0.327 -1 0 84 475.3512610478841 NaN 0 475.3366394042969 PEAK HCD FTMS 0 0 0 28328 147017.28125 0.6078661084189897 15 -0.11180877685546875 1 NaN NaN 2 NC(Carbamidomethyl (C)) 2 -1 4.068 0 0 0.42881 0 0 200.256463890887 471.32258020572505 671.579044096612 0 0 0 0 0 0 0 0 0 NC(Carbamidomethyl (C)) 0.42881 - 9 + NaN NaN 313598.7 NaN 22348 5979 28328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28330 111.09 NaN 1211700 35 0 599840 0.261 + 12045 KIIVPILIRIA 11 75 624.9442601763202 NaN 0 624.9440307617188 PEAK HCD FTMS 0 0 0 28328 190342.3125 0.633087188644465 11 -0.08556365966796875 2 Unmodified _KIIVPILIRIA_ ENSG00000162753|ENST00000367714|SLC9C2 0 0.34212014346876374 2 H 1 11 5.4846 0 0 0.43951 0 0 841.5800353899466 266.21204050774594 1107.7920758976925 0 0 0 0 0 0 0 0 0 H 0.43951 - 10 + NaN NaN 271912.2 NaN 22349 5979 28328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28332 111.1 NaN 932990 35 0 174930 0.347 -1 0 99 541.3585549779112 540.3512785113112 1 541.3766479492188 MULTI HCD FTMS 0 0 0 28331 128883.3125 0.05637061700249032 140 -1.0135726928710938 1 NaN NaN 2 E 1 -1 8.5177 0 0 1.5763 0 0 214.1572563542985 194.12665735416252 408.283913708461 0 0 0 0 0 0.19238776965543153 0 0.3494850021680094 0 E 1.5763 - 9 + NaN NaN 309350.4 NaN 22350 5980 28331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28334 111.1 NaN 2015400 35 0 528840 0.327 -1 0 104 417.2770506357768 832.5395483383536 2 417.27685546875 MULTI HCD FTMS 0 0 0 28333 1128633.25 0.9298565390866957 -4 0.028472900390625 1 NaN NaN 2 A{M(Oxidation (M))|F} 2 -1 12.959 0 0 1.5565 0 0 198.16268123963272 413.2907808893188 611.4534621289515 0 0 0 0 0 0.5 0 0 0 A{M(Oxidation (M))|F} 1.5565 - 46 + NaN NaN 397652.1 NaN 22351 5981 28333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28335 111.11 NaN 2277900 35 0 265640 0.261 -1 0 132 447.80334049198683 893.5921280507737 2 447.8034973144531 MULTI HCD FTMS 0 0 0 28333 463853.21875 0.5860946965652701 1 -0.0087890625 2 NaN NaN 2 A 1 -1 3.9794 0 0 0.44533 0 0 215.189174418989 604.3554171197874 819.5445915387763 0 0 0 0 0 0 0 0 0 A 0.44533 - 49 + NaN NaN 445249.3 NaN 22352 5981 28333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28338 111.12 NaN 689520 35 0 57567 0.411 + 23002 RAGRRKRLL 9 91 563.3765885503723 NaN 0 563.3888549804688 PEAK HCD FTMS 0 0 0 28337 120334.4140625 0.6107474917520487 4 -0.032135009765625 1 Unmodified _RAGRRKRLL_ ENST00000348165.9_1_7:156931958-156961760:+|nuORF 1.844237919475145 0.28630992268396543 2 T 1 9 8.0989 0 0 0.72007 0 0 256.2145059131546 764.4414156549436 1020.6559215680982 0 0 0 0 0 0 0 0.3494850021680094 0 T 0.72007 - 17 + NaN NaN 299098 NaN 22353 5983 28337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28340 111.13 NaN 2108100 35 0 272400 0.326 -1 0 109 447.80334049198683 893.5921280507737 2 447.80352783203125 MULTI HCD FTMS 0 0 0 28339 426913.625 0.5394202333622472 4 -0.032073974609375 1 NaN NaN 2 Q 1 -1 11.42 0 0 1.278 0 0 747.5193721687409 0 747.5193721687409 0 3.945733173425534 0 0 0 0 0 0 0 Q 1.278 - 82 + NaN NaN 479452.7 NaN 22354 5984 28339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28342 111.13 NaN 1032100 35 0 121930 0.35 -1 0 128 453.32721125986666 452.31993479326667 1 453.3241882324219 MULTI HCD FTMS 0 0 0 28341 531649.25 0.5846569936213711 -53 0.34522247314453125 1 NaN NaN 2 E 1 -1 5.8188 0 0 1.2864 0 0 126.12640559580417 194.12671838931877 320.25312398512295 0 0 0 0 0 0 0 0.3054621874040891 0 E 1.2864 - 10 + NaN NaN 338612.3 NaN 22355 5985 28341 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28344 111.14 NaN 1672300 35 0 367770 0.327 -1 0 92 434.3038962046696 866.5932394761393 2 434.30352783203125 MULTI HCD FTMS 0 0 0 28343 764050.1875 0.5416623724370095 1 -0.01210784912109375 1 NaN NaN 2 AC 2 -1 7.0783 0 0 0.8168 0 0 276.227652173208 413.2909029596313 689.5185551328393 0 0 0 0 0 0 0 0 0 AC 0.8168 - 14 + NaN NaN 342604.9 NaN 22356 5986 28343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28345 111.14 NaN 714760 35 0 65126 0.261 + 12078 KKELLIRII 9 74 563.3897189300485 1124.764884926897 2 563.3897094726562 MULTI HCD FTMS 0 0 0 28343 176879.1875 0.3951836216325096 -3 0.02002716064453125 2 Unmodified _KKELLIRII_ tr|U7SWK3|U7SWK3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01076PE=4SV=1 0.5247636613948944 0.34703895399870666 2 H 1 9 5.0886 0 0 0.45242 0 0 731.4624433832547 253.216781718571 984.6792251018258 0 0 0 0 0 0.5 0 0 0 H 0.45242 - 20 + NaN NaN 216995.9 NaN 22357 5986 28343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28346 111.15 NaN 730520 35 0 137200 0.261 + 14993 LLLILTRPLKL 11 86 646.9576733963925 NaN 0 646.9577026367188 PEAK HCD FTMS 0 0 0 28343 121429.46875 0.44058186050092457 1 -0.01210784912109375 3 Unmodified _LLLILTRPLKL_ REV__ENSG00000144035|ENST00000272425|NAT8;REV__nc|ENSG00000204872|Q9UHF3|NAT8B 0.35063188157827746 0.3411255017974031 2 AH 2 -1 5.9691 0 0 0.46204 0 0 437.3806045058723 643.4113253229124 1080.7919298287848 0 0 0 0 0 0 0 0 0 AH 0.46204 - 5 + NaN NaN 211128.4 NaN 22358 5986 28343 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28348 111.15 NaN 1788900 35 0 387530 0.335 + 15904 LPLQKLLLPSL 11 133 412.27631500543373 NaN 0 412.29034423828125 PEAK HCD FTMS 0 0 0 28347 32213.57421875 0.28108160045111164 2 -0.015716552734375 1 Unmodified _LPLQKLLLPSL_ ENSG00000142197|ENST00000691173|DOP1B;nc|ENSG00000142197|Q9Y3R5-2|DOP1B 1.3296431237094175 0.3383483288439026 2 A 1 11 3.9794 0 0 0.4838 0 0 144.13555253574833 604.3545504626452 748.4901029983935 0 0 0 0 0 0 0 0 0 A 0.4838 - 7 + NaN NaN 495441.6 NaN 22359 5987 28347 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28350 111.16 NaN 2431600 35 0 346890 0.327 + 12599 KVAGKLNV 8 86 414.7681721797511 NaN 0 414.768310546875 PEAK HCD FTMS 0 0 0 28349 795037.8125 0.8262767544717179 -6 0.04573822021484375 1 Unmodified _KVAGKLNV_ REV__ENSG00000157181|ENST00000287859|ODR4;REV__nc|ENSG00000157181|Q5SWX8-2|ODR4;REV__nc|ENSG00000157181|Q5SWX8-3|ODR4;REV__nc|ENSG00000157181|Q5SWX8-4|ODR4 2.577480529830294 0.38822285293237185 2 C 1 -1 1.9897 0 0 0.24044 0 0 200.22627248274597 521.2589815729124 721.4852540556583 0 0 0 0 0 0 0 0 0 C 0.24044 - 2 + NaN NaN 405446.3 NaN 22360 5988 28349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28351 111.16 NaN 673400 35 0 71540 0.261 + 23371 RKRLIQRR 8 77 563.3767399666123 NaN 0 563.3900146484375 PEAK HCD FTMS 0 0 0 28349 54460.96484375 0.46313030218655726 -6 0.04573822021484375 2 Unmodified _RKRLIQRR_ ENSG00000186788|ENST00000445385|SPATA31D3;ENSG00000189357|ENST00000419782|SPATA31D4 0.6903765706972694 0.38822285293237185 2 N 1 8 3.0989 0 0 0.27553 0 0 790.5641050779526 217.1077822320922 1007.6718873100448 0 0 0 0 0 0 0 0 0 N 0.27553 - 10 + NaN NaN 199184.5 NaN 22361 5988 28349 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28353 111.17 NaN 1506600 35 0 187470 0.378 -1 0 122 448.337355668134 894.6601584030681 2 448.33740234375 MULTI HCD FTMS 0 0 0 28352 499718.78125 0.6402533514904597 -21 0.1491241455078125 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.61303 0 0 216.257058150334 604.3546814444122 820.6117395947463 0 0 0 0 0 0 0 0 0 A 0.61303 - 18 + NaN NaN 493905.7 NaN 22362 5989 28352 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28357 111.19 NaN 976820 35 0 87612 0.387 + 14798 LILVLLPVAS 10 105 519.3507473843096 NaN 0 519.3637084960938 PEAK HCD FTMS 0 0 0 28356 78638.1171875 0.3307539985838835 14 -0.0970916748046875 1 Unmodified _LILVLLPVAS_ ENSG00000104432|ENST00000263851|IL7;ENST00000521323.1_1_8:79710258-79717217:-|nuORF;nc|ENSG00000104432|P13232-2|IL7 1.6526216038709556 0.33876987398426067 2 C(Carbamidomethyl (C)) 1 10 5.3567 0 0 0.51671 0 0 358.28401887660056 515.3505953424436 873.6346142190441 0 0 0 0 0 0.4247425010840047 0 0 0 C(Carbamidomethyl (C)) 0.51671 - 8 + NaN NaN 363732.8 NaN 22363 5992 28356 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28360 111.2 NaN 817570 35 0 69580 0.411 -1 0 121 492.3636825647935 982.7128121963871 2 492.3637390136719 MULTI HCD FTMS 0 0 0 28359 405146.53125 0.5299427059535924 -14 0.102996826171875 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.40494 0 0 216.25757679005238 692.4076489827563 908.6652257728088 0 0 0 0 0 0 0 0 0 A 0.40494 - 28 + NaN NaN 364168.3 NaN 22364 5994 28359 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28362 111.21 NaN 859520 35 0 110820 0.327 -1 0 82 580.4164140551911 NaN 0 580.4164428710938 PEAK HCD FTMS 0 0 0 28361 654792.9375 0.9241043915454756 -21 0.15106964111328125 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.3434 0 0 348.33817781394333 736.4335233142007 1084.771701128144 0 0 0 0 0 0 0 0 0 A 0.3434 - 9 + NaN NaN 222319.6 NaN 22365 5995 28361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28363 111.21 NaN 985490 35 0 94984 0.261 -1 0 93 497.36017014812734 NaN 0 497.3514709472656 PEAK HCD FTMS 0 0 0 28361 68587.703125 0.5336315693147925 1 -0.00914764404296875 2 NaN NaN 2 E 1 -1 3.0989 0 0 0.31217 0 0 402.35474343680374 458.29795252017817 860.6526959569819 0 0 0 0 0 0 0 0 0 E 0.31217 - 5 + NaN NaN 251438.4 NaN 22366 5995 28361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28366 111.22 NaN 848650 35 0 106970 0.372 + 25721 SKIKLLIKR 9 115 549.8898546808674 1097.7651564285347 2 549.8900756835938 MULTI HCD FTMS 0 0 0 28365 401075.375 0.641632375548362 -11 0.08354949951171875 1 Unmodified _SKIKLLIKR_ REV__ENSG00000231861|ENST00000427338|OR5K2 0.45834013312273997 0.3475424938045562 2 G 1 -1 9.732 0 0 0.88653 0 0 199.23099628736378 838.5008585868446 1037.7318548742085 0 0 0 0 0 0.4247425010840047 0 0 0 G 0.88653 - 25 + NaN NaN 319605.4 NaN 22367 5997 28365 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28368 111.23 NaN 872190 35 0 190020 0.407 + 20914 PKPVEKKKK 9 116 541.3586421614717 NaN 0 541.37646484375 PEAK HCD FTMS 0 0 0 28367 159174.71875 0.6476927716247605 -4 0.029083251953125 1 Unmodified _PKPVEKKKK_ REV__ENSG00000131759|ENST00000254066|RARA;REV__nc|ENSG00000131759|P10276-2|RARA;REV__nc|ENSG00000131759|P10276-3|RARA 7.289230182591677 0.2599242500475609 2 E 1 -1 3.5835 0 0 0.33159 0 0 754.5093712325819 194.12652002506096 948.6358912576428 0 0 0 0 0 0 0 0.3494850021680094 0 E 0.33159 + + 2 + NaN NaN 359035.5 NaN 22368 5998 28367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28370 111.24 NaN 1038200 35 0 115690 0.373 -1 0 117 475.324689193432 474.317412726832 1 475.3370056152344 MULTI HCD FTMS 0 0 0 28369 191822.859375 0.7497749605665687 4 -0.02585601806640625 1 NaN NaN 2 A 1 -1 2.4743 0 0 0.52164 0 0 183.144757552807 217.10788904361564 400.25264659642266 0 0 0 0 0 0 0 0 0 A 0.52164 - 12 + NaN NaN 370321.6 NaN 22369 5999 28369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28376 111.27 NaN 1027300 35 0 141670 0.327 -1 0 90 453.32721125986666 452.31993479326667 1 453.3239440917969 MULTI HCD FTMS 0 0 0 28375 558699.75 0.6144045461777885 -34 0.2373504638671875 1 NaN NaN 2 E 1 -1 4.1463 0 0 0.91668 0 0 126.1264361133823 194.12648950748283 320.25292562086514 0 0 0 0 0 0 0 0.28872548999643577 0 E 0.91668 - 11 + NaN NaN 247255.1 NaN 22370 6004 28375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28377 111.27 NaN 312180 35 0 44827 0.261 + 15302 LPALLLLLLLR 11 74 624.4426064810326 NaN 0 624.4419555664062 PEAK HCD FTMS 0 0 0 28375 233877.109375 0.45954572681284517 35 -0.261016845703125 2 Unmodified _LPALLLLLLLR_ ENSG00000134470|ENST00000379977|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000134470|Q13261-4|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000134470|Q13261-8|IL15RA;nc|ENSG00000134470|Q13261-9|IL15RA 0.3070304955306653 0.3412491863730806 2 DC(Carbamidomethyl (C)) 2 11 6.4537 0 0 0.51759 0 0 348.3366476997897 620.4257296197874 968.7623773195771 0 0 0 0 0 0 0 0 0 DC(Carbamidomethyl (C)) 0.51759 - 8 + NaN NaN 141074.5 NaN 22371 6004 28375 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28381 111.29 NaN 1977800 35 0 470650 0.327 -1 0 89 470.35035736104356 938.6861617888871 2 470.35028076171875 MULTI HCD FTMS 0 0 0 28380 937862.9375 1 0 0 1 NaN NaN 2 N 1 -1 5.4846 0 0 0.58428 0 0 542.4723994371278 279.1443102303572 821.616709667485 0 0 0 0 0 0 0 0 0 N 0.58428 - 15 + NaN NaN 389564.9 NaN 22372 6007 28380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28382 111.3 NaN 1504800 35 0 203840 0.261 -1 0 88 448.337355668134 894.6601584030681 2 448.337646484375 MULTI HCD FTMS 0 0 0 28380 428913.4375 0.5495356111526354 -3 0.02178192138671875 2 NaN NaN 2 A 1 -1 5.4846 0 0 0.61303 0 0 216.2575432178183 604.3547620203273 820.6123052381456 0 0 0 0 0 0 0 0 0 A 0.61303 - 10 + NaN NaN 313577.8 NaN 22373 6007 28380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28383 111.3 NaN 1276900 35 0 239680 0.261 -1 PVMFCLREASK 11 110 432.88521948759 NaN 0 432.88531494140625 PEAK HCD FTMS 0 0 0 28380 403018.53125 0.14802712196809723 33 -0.24600982666015625 3 Oxidation (M) _PVM(Oxidation (M))FCLREASK_ ENST00000337120.9_2_16:28876447-28876516:+|nuORF 1.214830529360525 0.33867401910978034 2 MD 2 -1 7.9588 0 0 0.92142 0 0 186.3808429441088 428.2723482721313 614.6531912162401 0 0 0 0 0 0 0 0 0 MD 0.92142 - 10 + NaN NaN 278445.2 NaN 22374 6007 28380 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28385 111.3 NaN 1014700 35 0 109980 0.334 -1 0 98 475.324689193432 474.317412726832 1 475.3373718261719 MULTI HCD FTMS 0 0 0 28384 86083.3125 0.33647247489388077 13 -0.09922027587890625 1 NaN NaN 2 K 1 -1 11.99 0 0 2.5278 0 0 328.20829515046324 0 328.20829515046324 0 11.020599913279625 0 0 0 0 0 0 0 K 2.5278 - 12 + NaN NaN 321546.9 NaN 22375 6008 28384 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28389 111.32 NaN 849620 35 0 73011 0.411 -1 0 125 492.3636825647935 982.7128121963871 2 492.3635559082031 MULTI HCD FTMS 0 0 0 28388 482128.375 0.6306370558726295 3 -0.02626800537109375 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.40494 0 0 216.25788488595668 692.4069771152505 908.6648620012072 0 0 0 0 0 0 0 0 0 A 0.40494 - 14 + NaN NaN 347107.3 NaN 22376 6011 28388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28391 111.33 NaN 1662100 35 0 196010 0.327 -1 0 82 431.32466067312106 NaN 0 431.3102111816406 PEAK HCD FTMS 0 0 0 28390 155932.234375 0.3595069343592379 40 -0.28638458251953125 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.81216 0 0 270.28461284870144 427.3051851861938 697.5897980348952 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.81216 - 5 + NaN NaN 342015.2 NaN 22377 6012 28390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28392 111.33 NaN 716800 35 0 104380 0.261 -1 0 80 580.4164140551911 NaN 0 580.4163208007812 PEAK HCD FTMS 0 0 0 28390 644118.3125 0.9090393728568751 -4 0.026580810546875 2 NaN NaN 2 G 1 -1 4.6041 0 0 0.39731 0 0 216.2523699557068 882.5272402509796 1098.7796102066864 0 0 0 0 0 0 0 0 0 G 0.39731 - 13 + NaN NaN 203131.7 NaN 22378 6012 28390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28393 111.34 NaN 1034800 35 0 94599 0.261 + 30976 VRVVKARPI 9 84 519.3510711863063 NaN 0 519.3637084960938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _VRVVKARPI_ REV__ENSG00000121690|ENST00000241051|DEPDC7;REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF;REV__ENST00000532078.1_1_11:33037501-33049388:+|nuORF;REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7 0 0.29524684227089293 2 Q 1 -1 5.4846 0 0 0.52905 0 0 628.5886756171875 277.0201214301672 905.6087970473548 0 0 0 0 0 0 0 0 0 Q 0.52905 - 3 + NaN NaN 247743.7 NaN 22379 6012 28390 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28399 111.37 NaN 1038200 35 0 114760 0.373 -1 0 119 475.324689193432 474.317412726832 1 475.3370361328125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 K 1 -1 10.596 0 0 2.2339 0 0 328.20834092683043 0 328.20834092683043 0 9.00213822547398 0 0 0 0 0 0 0 K 2.2339 - 25 + NaN NaN 372946.8 NaN 22380 6017 28398 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28402 111.38 NaN 757680 35 0 135990 0.327 -1 0 87 602.4474375490603 NaN 0 602.4284057617188 PEAK HCD FTMS 0 0 0 28401 122682.09375 0.329297126835644 14 -0.10771942138671875 1 NaN NaN 2 N 1 -1 4.6041 0 0 0.38276 0 0 786.6283212877705 299.18537317447505 1085.8136944622456 0 0 0 0 0 0 0 0 0 N 0.38276 - 22 + NaN NaN 206140.8 NaN 22381 6019 28401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28403 111.39 NaN 1007200 35 0 93993 0.261 -1 LIKIPRKK 8 83 519.3634892680661 NaN 0 519.3632202148438 PEAK HCD FTMS 0 0 0 28401 251907.828125 0.39970666048640047 -9 0.06417083740234375 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LIKIPRKK_ ENST00000316059.6_1_11:58352348-58378460:+|nuORF 0.6903765706972694 0.38822285293237185 2 Q 1 -1 5.4846 0 0 0.52903 0 0 628.6133788273447 277.0202363689129 905.6336151962576 0 0 0 0 0 0 0 0 0 Q 0.52903 - 2 + NaN NaN 245354.7 NaN 22382 6019 28401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28408 111.41 NaN 1603000 35 0 195480 0.327 -1 0 87 431.32466067312106 NaN 0 431.31048583984375 PEAK HCD FTMS 0 0 0 28407 50584.08984375 0.11662329562561831 51 -0.342254638671875 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 6.9897 0 0 0.81216 0 0 270.2841727315376 427.305984524375 697.5901572559126 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.81216 - 3 + NaN NaN 413559.6 NaN 22383 6023 28407 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28410 111.42 NaN 1452200 35 0 261530 0.327 + 31105 VTKKKKKKK 9 97 558.4027012330176 1114.7908495328352 2 558.9041748046875 MULTI HCD FTMS 0 0 0 28409 287403.71875 0.6643902473558885 28 -0.19518280029296875 1 Unmodified _VTKKKKKKK_ AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|5|2|sense 0 0.3510170533115441 2 G 1 9 4.6041 0 0 0.413 0 0 216.25907619667777 838.5012461872122 1054.76032238389 0 0 0 0 0 0 0 0 0 G 0.413 - 42 + NaN NaN 315438.8 NaN 22384 6024 28409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28411 111.43 NaN 755980 35 0 161850 0.261 + 30937 VRKKKRRR 8 79 563.8920125518493 NaN 0 563.8917846679688 PEAK HCD FTMS 0 0 0 28409 178138.796875 0.7823467252713349 1 -0.008758544921875 2 Unmodified _VRKKKRRR_ REV__DEK|p.E11Rfs*53|1|0.3|ENSG00000124795|chr6:18263957-18263957|C/-|frameshift_variant 0.6903765706972694 0.38822285293237185 2 K 1 -1 6.9897 0 0 0.62088 0 0 579.4450225628799 415.1941575507676 994.6391801136475 0 0 0 0 0 0 0 0 0 K 0.62088 + + 10 + NaN NaN 206013.5 NaN 22385 6024 28409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28413 111.43 NaN 1046300 35 0 155800 0.411 -1 0 106 448.337355668134 894.6601584030681 2 448.3373718261719 MULTI HCD FTMS 0 0 0 28412 301577.21875 0.386388969721876 15 -0.1073455810546875 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.61303 0 0 216.2573271059029 604.3540114753891 820.6113385812921 0 0 0 0 0 0 0 0 0 A 0.61303 - 23 + NaN NaN 410949.1 NaN 22386 6025 28412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28416 111.44 NaN 668490 35 0 52537 0.411 -1 0 114 492.3636825647935 982.7128121963871 2 492.36358642578125 MULTI HCD FTMS 0 0 0 28415 517711.625 0.6771809167652388 19 -0.13153076171875 1 NaN NaN 2 G 1 -1 6.9897 0 0 0.71127 0 0 216.25785365033613 706.4229323254931 922.6807859758292 0 0 0 0 0 0 0 0 0 G 0.71127 - 17 + NaN NaN 288620.2 NaN 22387 6027 28415 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28419 111.46 NaN 460310 35 0 56617 0.411 -1 0 84 580.4164140551911 NaN 0 580.41650390625 PEAK HCD FTMS 0 0 0 28418 225174.375 0.3177869168770742 13 -0.0927581787109375 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.3434 0 0 392.3615930132284 692.407009729934 1084.7686027431623 0 0 0 0 0 0 0 0 0 A 0.3434 - 13 + NaN NaN 243852.2 NaN 22388 6029 28418 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28421 111.46 NaN 1352000 35 0 250010 0.327 + 30288 VKKKKKTKK 9 91 558.4027012330176 1114.7908495328352 2 558.904052734375 MULTI HCD FTMS 0 0 0 28420 201451.90625 0.4656957203124316 34 -0.23062896728515625 1 Unmodified _VKKKKKTKK_ REV__ENSG00000135040|ENST00000361671|NAA35 0.6014990680409731 0.3464572424761564 2 A 1 -1 3.9794 0 0 0.35696 0 0 348.33678206348003 692.4077852838499 1040.7445673473298 0 0 0 0 0 0 0 0 0 A 0.35696 - 22 + NaN NaN 311205.1 NaN 22389 6030 28420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28422 111.47 NaN 619200 35 0 98236 0.261 + 30188 VHLLKKKLLI 10 87 602.9316716002302 NaN 0 602.9307250976562 PEAK HCD FTMS 0 0 0 28420 81967.5390625 0.2819120745918341 1 -0.0090789794921875 2 Unmodified _VHLLKKKLLI_ ENSG00000255398|ENST00000528880|HCAR3;HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant 0 0.34018428902965525 2 N 1 10 4.6041 0 0 0.38245 0 0 787.596484214329 299.1853328569127 1086.7818170712417 0 0 0 0 0 0 0 0 0 N 0.38245 - 15 + NaN NaN 191087.6 NaN 22390 6030 28420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28425 111.48 NaN 1563900 35 0 369170 0.327 -1 0 94 470.35035736104356 938.6861617888871 2 470.8526611328125 MULTI HCD FTMS 0 0 0 28424 78475.875 0.16782331273190143 14 -0.09543609619140625 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.58428 0 0 216.25702582524622 648.3808798301022 864.6379056553485 0 0 0 0 0 0 0 0 0 A 0.58428 - 18 + NaN NaN 323750.2 NaN 22391 6032 28424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28426 111.48 NaN 1749400 35 0 1330200 0.261 -1 0 74 625.5757282434917 624.5684517768916 1 625.5760498046875 MULTI HCD FTMS 0 0 0 28424 366452.28125 0.8291069861218208 3 -0.0231781005859375 2 NaN NaN 2 C 1 -1 2.4743 0 0 0.39615 0 0 149.27036935677285 369.26288782291255 518.5332571796854 0 0 0 0 0 0 0 0 0 C 0.39615 - 7 + NaN NaN 355449.8 NaN 22392 6032 28424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28428 111.49 NaN 1323000 35 0 157460 0.411 -1 0 108 431.2979946440332 430.29071817743323 1 431.3103332519531 MULTI HCD FTMS 0 0 0 28427 296464 0.5762156221621898 -2 0.01540374755859375 1 NaN NaN 2 P 1 -1 2.2185 0 0 0.51558 0 0 210.1598568266504 120.05014215640858 330.209998983059 0 0 0 0 0 0 0 0 0 P 0.51558 - 6 + NaN NaN 486532.4 NaN 22393 6033 28427 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28430 111.5 NaN 902910 35 0 109070 0.411 + 30767 VPPAKILIV 9 115 475.3243751647875 NaN 0 475.3372802734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VPPAKILIV_ ENSG00000112992|ENST00000344920|NNT;NNT|p.A289Cfs*10|1|0.43|ENSG00000112992|chr5:43628286-43628287|-/T|frameshift_variant 0.6014990680409731 0.29233206172879045 2 C(Carbamidomethyl (C)) 1 9 5.2731 0 0 0.55586 0 0 314.2566941132001 471.3240145318969 785.580708645097 0 0 0 0 0 0.3054621874040891 0 0 0 C(Carbamidomethyl (C)) 0.55586 - 14 + NaN NaN 363884.9 NaN 22394 6034 28429 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28432 111.5 NaN 793930 35 0 91091 0.411 -1 0 103 558.4210399279162 557.4137634613162 1 558.4026489257812 MULTI HCD FTMS 0 0 0 28431 145257.765625 0.3497020581890269 23 -0.15172576904296875 1 NaN NaN 2 P 1 -1 3.0989 0 0 0.55595 0 0 108.14680897088495 349.1859224908813 457.33273146176623 0 0 0 0 0 0 0 0 0 P 0.55595 - 5 + NaN NaN 329541.5 NaN 22395 6035 28431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28435 111.52 NaN 1394200 35 0 187340 0.411 + 23416 RLKQKIKVLKK 11 118 461.32984403811724 NaN 0 461.329833984375 PEAK HCD FTMS 0 0 0 28434 974693.375 0.5599697205245493 -60 0.44058990478515625 1 Unmodified _RLKQKIKVLKK_ ENSG00000147905|ENST00000336755|ZCCHC7;ENST00000481507.5_1_9:37326993-37357262:+|nuORF;GLIPR2-ZCCHC7|1|fusion;SEC23B-ZCCHC7|1|fusion;SEC23B-ZCCHC7|2|fusion 0.09484139111097674 0.34185110575506755 2 A 1 11 6.9897 0 0 0.75922 0 0 198.21602503603464 648.3805636041624 846.5965886401971 0 0 0 0 0 0 0 0 0 A 0.75922 - 16 + NaN NaN 507427.1 NaN 22396 6037 28434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28438 111.53 NaN 1098600 35 0 198920 0.411 -1 0 114 595.0475101999142 3564.241402399885 6 595.3818359375 MULTI HCD FTMS 0 0 0 28437 442413.34375 0.12094517656807088 75 -0.5307693481445312 1 NaN NaN 2 AS 2 -1 4.068 0 0 0.11413 0 0 2533.629681682233 869.5130098932249 3403.142691575458 0 0 0 0 0 0 0 0 0 AS 0.11413 - 16 + NaN NaN 423902.7 NaN 22397 6039 28437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28445 111.57 NaN 1399300 35 0 173020 0.411 -1 0 121 431.2979946440332 430.29071817743323 1 431.3105163574219 MULTI HCD FTMS 0 0 0 28444 173644.09375 0.33749945866933545 10 -0.06783294677734375 1 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}E 3 -1 1.1709 0 0 0.27212 0 0 0 56.07212509174397 56.07212509174397 0.8933257842012505 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}E 0.27212 - 10 NaN NaN 523574.9 NaN 22398 6045 28444 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28447 111.58 NaN 1229900 35 0 182120 0.326 -1 0 87 507.3292404848786 506.3219640182786 1 507.3288269042969 MULTI HCD FTMS 0 0 0 28446 1109384.5 0.17280569796353878 36 -0.2389984130859375 1 NaN NaN 2 S 1 -1 2.7642 0 0 0.54594 0 0 86.11027686183174 330.1499434725455 416.2602203343772 0 0 0 0 0 0 0 0 0 S 0.54594 - 6 + NaN NaN 283053.3 NaN 22399 6046 28446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28448 111.58 NaN 601370 35 0 51667 0.261 -1 0 86 580.9190673828125 NaN 0 580.9190673828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 A 1 -1 3.9794 0 0 0.3434 0 0 348.3357774396498 736.4319552057249 1084.7677326453747 0 0 0 0 0 0 0 0 0 A 0.3434 - 18 + NaN NaN 184194.5 NaN 22400 6046 28446 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28451 111.59 NaN 840900 35 0 109270 0.341 -1 PLLLLLLL 8 86 475.33810114808364 948.6616493629673 2 475.33770751953125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))PLLLLLLL_ ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000004399|ENST00000324093|PLXND1;ENSG00000005108|ENST00000423059|THSD7A;ENSG00000070031|ENST00000176195|SCT;ENSG00000090554|ENST00000597551|FLT3LG;ENSG00000092758|ENST00000649368|COL9A3;ENSG00000096264|ENST00000373089|NCR2;ENSG00000101955|ENST00000378533|SRPX;ENSG00000104805|ENST00000405315|NUCB1;ENSG00000105696|ENST00000262817|TMEM59L;ENSG00000109255|ENST00000264218|NMU;ENSG00000110076|ENST00000265459|NRXN2;ENSG00000110811|ENST00000290510|P3H3;ENSG00000113273|ENST00000264914|ARSB;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000123384|ENST00000243077|LRP1;ENSG00000130202|ENST00000252483|NECTIN2;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000137142|ENST00000377694|IGFBPL1;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000142513|ENST00000270593|ACP4;ENSG00000143126|ENST00000271332|CELSR2;ENSG00000143434|ENST00000368914|SEMA6C;ENSG00000143590|ENST00000368408|EFNA3;ENSG00000149451|ENST00000356518|ADAM33;ENSG00000149930|ENST00000308893|TAOK2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000162337|ENST00000294304|LRP5;ENSG00000163421|ENST00000295619|PROK2;ENSG00000164054|ENST00000296444|SHISA5;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000165799|ENST00000298690|RNASE7;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000196811|ENST00000651502|CHRNG;ENSG00000215644|ENST00000400723|GCGR;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000466324.1_1_11:64444212-64481216:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000556356.1_1_12:57602422-57606335:+|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000594859.5_1_19:18723732-18728463:+|nuORF;ENST00000598660.1_1_19:18723732-18729158:+|nuORF;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000004399|Q9Y4D7-2|PLXND1;nc|ENSG00000090554|P49771-3|FLT3LG;nc|ENSG00000096264|O95944-2|NCR2;nc|ENSG00000096264|O95944-3|NCR2;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-5|SRPX;nc|ENSG00000110076|P58401|NRXN2;nc|ENSG00000110076|Q9P2S2-2|NRXN2;nc|ENSG00000113273|P15848-2|ARSB;nc|ENSG00000130202|Q92692-2|NECTIN2;nc|ENSG00000137161|Q9BT09-2|CNPY3;nc|ENSG00000142513|Q9BZG2-2|ACP4;nc|ENSG00000142513|Q9BZG2-3|ACP4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000143590|P52797-2|EFNA3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;nc|ENSG00000163421|Q9HC23-2|PROK2;nc|ENSG00000164054|Q8N114-5|SHISA5;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;nc|ENSG00000185896|P11279-2|LAMP1;nc|ENSG00000196811|P07510-2|CHRNG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000290691|A6NGW2|STRCP1;PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant;REV__C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;REV__CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__CON__ENSEMBL:ENSBTAP00000024146;REV__CON__Q6T181;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000069764|ENST00000438167|PLA2G10;REV__ENSG00000087116|ENST00000251582|ADAMTS2;REV__ENSG00000090554|ENST00000597551|FLT3LG;REV__ENSG00000105366|ENST00000321424|SIGLEC8;REV__ENSG00000109758|ENST00000382774|HGFAC;REV__ENSG00000110811|ENST00000290510|P3H3;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000126262|ENST00000599180|FFAR2;REV__ENSG00000132000|ENST00000588872|PODNL1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000136928|ENST00000259455|GABBR2;REV__ENSG00000137142|ENST00000377694|IGFBPL1;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000143126|ENST00000271332|CELSR2;REV__ENSG00000149654|ENST00000537909|CDH22;REV__ENSG00000149930|ENST00000308893|TAOK2;REV__ENSG00000155093|ENST00000389418|PTPRN2;REV__ENSG00000159189|ENST00000374640|C1QC;REV__ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000163421|ENST00000295619|PROK2;REV__ENSG00000165731|ENST00000355710|RET;REV__ENSG00000167925|ENST00000587427|GHDC;REV__ENSG00000169418|ENST00000368680|NPR1;REV__ENSG00000174348|ENST00000312553|PODN;REV__ENSG00000175356|ENST00000649792|SCUBE2;REV__ENSG00000182885|ENST00000333493|ADGRG3;REV__ENSG00000183971|ENST00000566435|NPW;REV__ENSG00000185245|ENST00000329125|GP1BA;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__ENSG00000254521|ENST00000291707|SIGLEC12;REV__ENSG00000283654|ENST00000637218|CIROP;REV__ENST00000254320.7_1_19:14044750-14048840:-|nuORF;REV__ENST00000355387.6_1_1:44870947-44877656:+|nuORF;REV__ENST00000361799.6_1_1:44870995-44877742:+|nuORF;REV__ENST00000367585.1_1_6:143823176-143832783:-|nuORF;REV__ENST00000369603.9_1_10:112063289-112064608:-|nuORF;REV__ENST00000374369.7_1_20:34025707-34025902:-|nuORF;REV__ENST00000396904.2_2_7:5097383-5112677:+|nuORF;REV__ENST00000450388.7_1_16:57702259-57712094:+|nuORF;REV__ENST00000498308.1_1_7:5111828-5112677:+|nuORF;REV__ENST00000565579.5_1_16:57702259-57712261:+|nuORF;REV__ENST00000586075.1_2_19:14044750-14048885:-|nuORF;REV__GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;REV__GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__nc|ENSG00000090554|P49771-3|FLT3LG;REV__nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;REV__nc|ENSG00000117899|Q14696-2|MESD;REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1;REV__nc|ENSG00000132000|Q6PEZ8-3|PODNL1;REV__nc|ENSG00000132000|Q6PEZ8|PODNL1;REV__nc|ENSG00000137161|Q9BT09-2|CNPY3;REV__nc|ENSG00000149930|Q9UL54-3|TAOK2;REV__nc|ENSG00000149930|Q9UL54-4|TAOK2;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000155093|Q92932-4|PTPRN2;REV__nc|ENSG00000163421|Q9HC23-2|PROK2;REV__nc|ENSG00000165731|P07949-2|RET;REV__nc|ENSG00000167925|Q8N2G8-2|GHDC;REV__nc|ENSG00000167925|Q8N2G8-3|GHDC;REV__nc|ENSG00000174348|Q7Z5L7-2|PODN;REV__nc|ENSG00000174348|Q7Z5L7-3|PODN;REV__nc|ENSG00000174348|Q7Z5L7-4|PODN;REV__nc|ENSG00000175356|Q9NQ36-2|SCUBE2;REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2;REV__nc|ENSG00000175356|Q9NQ36|SCUBE2;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant 0 0.5419923896992614 2 C(Carbamidomethyl (C)) 1 -1 9.3862 0 0 0.98942 0 0 474.3460803705829 311.25866223645875 785.6047426070417 0 0 0 0 0 0.7396518287104438 0 0 0 C(Carbamidomethyl (C)) 0.98942 - 25 + NaN NaN 292359.8 NaN 22401 6048 28450 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28455 111.61 NaN 508500 35 0 30168 0.411 -1 0 104 492.36474700134306 982.7149410694861 2 492.36480712890625 MULTI HCD FTMS 0 0 0 28454 384676.90625 0.6005545842554938 1 -0.00676727294921875 1 NaN NaN 2 G 1 -1 5.4846 0 0 0.5581 0 0 216.26015461003573 706.4225238657605 922.6826784757961 0 0 0 0 0 0 0 0 0 G 0.5581 - 19 + NaN NaN 258397.6 NaN 22402 6051 28454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28457 111.62 NaN 685150 35 0 88977 0.411 + 22191 QLKRKILIKH 10 109 638.9323813444837 NaN 0 638.9326171875 PEAK HCD FTMS 0 0 0 28456 181440.5 0.2584253229484213 -4 0.02521514892578125 1 Unmodified _QLKRKILIKH_ ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1 0.4007161486938917 0.3398413315442166 2 D 1 10 5.2165 0 0 0.40887 0 0 157.18636658008796 1000.5860126053157 1157.7723791854037 0 0 0 0 0 0.2742275032520141 0 0 0 D 0.40887 - 14 + NaN NaN 297111 NaN 22403 6052 28456 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28464 111.65 NaN 667020 35 0 69969 0.411 + 12218 KKVKKGKKK 9 101 536.390869140625 NaN 0 536.390869140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKVKKGKKK_ REV__ENSG00000170807|ENST00000458573|LMOD2 0 0.29524684227089293 2 A 1 -1 5.4846 0 0 0.51221 0 0 348.33647506239373 648.3802203173948 996.7166953797885 0 0 0 0 0 0 0 0 0 A 0.51221 - 12 + NaN NaN 292251.4 NaN 22404 6058 28463 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28466 111.66 NaN 2163600 35 0 1529300 0.411 -1 0 103 625.5766904035519 NaN 0 625.43310546875 PEAK HCD FTMS 0 0 0 28465 191563.703125 0.25733049373225775 -5 0.03139495849609375 1 NaN NaN 2 D 1 -1 3.9794 0 0 0.31857 0 0 174.5001502574674 956.5646860868457 1131.064836344313 0 0 0 0 0 0 0 0 0 D 0.31857 - 19 + NaN NaN 748395.4 NaN 22405 6059 28465 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28468 111.67 NaN 963220 35 0 137930 0.399 + 16603 LVPQIPLLLP 10 114 551.86317283173 NaN 0 551.8632202148438 PEAK HCD FTMS 0 0 0 28467 142086.03125 0.22484123773740164 1 -0.00701141357421875 1 Unmodified _LVPQIPLLLP_ ENST00000564910.5_1_15:66161870-66170170:+|nuORF;ENST00000565075.5_1_15:66161855-66169768:+|nuORF 1.4819007175156935 0.33891598740166873 2 WS 2 10 8.2011 0 0 0.74439 0 0 141.1232542419587 684.4404876911323 825.563741933091 0 0 0 0 0 0.3252574989159953 0 0 0 WS 0.74439 - 22 + NaN NaN 373857.6 NaN 22406 6060 28467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28478 111.73 NaN 1308800 35 0 114640 0.326 -1 0 105 594.9056964115738 1187.7968398899475 2 594.9057006835938 MULTI HCD FTMS 0 0 0 28477 129247.9921875 0.10345607050930894 -13 0.08294677734375 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46174 0 0 686.699990379985 351.0360119101978 1037.7360022901828 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46174 - 30 + NaN NaN 359022.1 NaN 22407 6069 28477 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28480 111.73 NaN 548140 35 0 71962 0.411 -1 0 111 603.4188305175859 1204.8231081019717 2 603.418701171875 MULTI HCD FTMS 0 0 0 28479 237041.015625 0.24563821497772442 -28 0.18144989013671875 1 NaN NaN 2 A 1 -1 5.1057 0 0 0.42378 0 0 482.39287218568376 648.3795361482554 1130.7724083339392 0 0 0 0 0 0.28872548999643577 0 0 0 A 0.42378 - 45 + NaN NaN 256522.6 NaN 22408 6070 28479 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28487 111.77 NaN 1084700 35 0 90882 0.411 -1 0 129 572.3986742491423 571.3913977825423 1 573.398681640625 MULTI HCD FTMS 0 0 0 28486 697114.75 0.13684991164621896 113 -0.95587158203125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 21 NaN NaN 418051.4 NaN 22409 6076 28486 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28489 111.78 NaN 1127500 35 0 100920 0.327 -1 0 121 572.3986742491423 571.3913977825423 1 573.4010009765625 MULTI HCD FTMS 0 0 0 28488 909950.3125 0.17863145180628343 114 -0.9706192016601562 1 NaN NaN 2 D 1 -1 0.9691 0 0 0.1696 0 0 122.12539982347734 331.2273348443969 453.35273466787424 0 0 0 0 0 0 0 0 0 D 0.1696 - 23 + NaN NaN 332011.8 NaN 22410 6077 28488 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28491 111.78 NaN 700030 35 0 123120 0.411 + 23284 RHLLGLLLIA 10 129 559.873996300541 1117.7334396678818 2 559.874267578125 MULTI HCD FTMS 0 0 0 28490 207926.375 0.35758291541437875 3 -0.0222015380859375 1 Unmodified _RHLLGLLLIA_ ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-3|CROT 6.723162845929126 0.4397169348982109 2 A 1 9 5.8412 0 0 0.52259 0 0 659.4605950931965 384.2235111519782 1043.6841062451747 0 0 0 0 0 0.2742275032520141 0 0 0 + A 0.52259 + + 76 + NaN NaN 297251.9 NaN 22411 6078 28490 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28493 111.79 NaN 1164800 35 0 108490 0.354 -1 0 121 572.3986742491423 571.3913977825423 1 573.3988647460938 MULTI HCD FTMS 0 0 0 28492 376418.4375 0.07389433362854937 116 -0.985687255859375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 21 NaN NaN 370950.8 NaN 22412 6079 28492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28495 111.8 NaN 1144700 35 0 173360 0.327 -1 0 109 581.4057943306551 1160.7970357281101 2 581.4070434570312 MULTI HCD FTMS 0 0 0 28494 525776.125 0.28949283389422364 -9 0.05817413330078125 1 NaN NaN 2 D 1 -1 3.9794 0 0 0.34282 0 0 174.2108033109875 868.5117556121443 1042.7225589231318 0 0 0 0 0 0 0 0 0 D 0.34282 - 14 + NaN NaN 261835.8 NaN 22413 6080 28494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28496 111.8 NaN 1055100 35 0 95225 0.261 + 14668 LGSLKRLLTT 10 111 551.3553071173194 NaN 0 551.360107421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LGSLKRLLTT_ REV__ENST00000485486.1_1_X:48334728-48336416:+|nuORF 8.745405648335112 0.33269943387702366 2 ATN 3 -1 8.6587 0 0 0.78665 0 0 378.2649832758512 433.28049646549067 811.5454797413419 0 0 0 0 0 0 0 0 0.3252574989159953 ATN 0.78665 - 26 + NaN NaN 261037.6 NaN 22414 6080 28494 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28498 111.81 NaN 993890 35 0 102210 0.327 + 9980 IEKAAVKSKK 10 101 551.3553071173194 NaN 0 551.3616943359375 PEAK HCD FTMS 0 0 0 28497 210626.8125 0.40110931360670105 -22 0.143585205078125 1 Unmodified _IEKAAVKSKK_ ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 8.155526934196011 0.33320428830121973 2 T 1 10 5.4846 0 0 0.49828 0 0 449.29454013552044 547.3236788385374 996.6182189740578 0 0 0 0 0 0 0 0 0 T 0.49828 - 14 + NaN NaN 241387.3 NaN 22415 6081 28497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28499 111.81 NaN 1064000 35 0 90056 0.261 + 12580 KTPKWLKI 8 111 507.32853418027406 NaN 0 507.33392333984375 PEAK HCD FTMS 0 0 0 28497 429970.40625 0.44240716285916304 -21 0.13642120361328125 2 Unmodified _KTPKWLKI_ REV__ENST00000393053.6_1_12:98941529-98941589:+|nuORF 4.75600775471527 0.38822285293237185 2 AGQ 3 -1 8.7287 0 0 0.86197 0 0 202.16039995053637 551.3592623346311 753.5196622851674 0 0 0 0 0 0.3807196863200844 0 0 0 AGQ 0.86197 - 40 + NaN NaN 262392 NaN 22416 6081 28497 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28502 111.82 NaN 920800 35 0 186540 0.327 -1 0 92 583.8836078581344 1165.7526627830687 2 583.8839721679688 MULTI HCD FTMS 0 0 0 28501 531633.1875 0.6593553455097476 -7 0.05144500732421875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.099 0 0 1.1236 0 0 1000.670171793614 0 1000.670171793614 0 7.614393726401687 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1236 - 10 + NaN NaN 235303.9 NaN 22417 6083 28501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28503 111.83 NaN 1201100 35 0 193020 0.261 + 27652 TAKKVKKAVK 10 100 550.8792867576101 1099.74402058202 2 550.8779907226562 MULTI HCD FTMS 0 0 0 28501 386183.53125 0.16806658769260127 -15 0.1016845703125 2 Unmodified _TAKKVKKAVK_ tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1 0.4007161486938917 0.47318265037741464 2 W 1 10 5.4846 0 0 0.49871 0 0 605.4862824001826 305.16025720767817 910.6465396078609 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.49871 - 18 + NaN NaN 266075.5 NaN 22418 6083 28501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28505 111.83 NaN 1196300 35 0 95872 0.327 + 12583 KTPRKSALI 9 117 507.32853418027406 NaN 0 507.32861328125 PEAK HCD FTMS 0 0 0 28504 380818.6875 0.39183374635013085 -18 0.1226806640625 1 Unmodified _KTPRKSALI_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|144|3|sense 8.155526934196011 0.2557262968844962 2 AGQ 3 -1 9.838 0 0 0.97151 0 0 202.16045252707517 551.3568819635374 753.5173344906125 0 0 0 0 0 0.3807196863200844 0 0 0 AGQ 0.97151 - 84 + NaN NaN 274422.2 NaN 22419 6084 28504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28506 111.83 NaN 585260 35 0 38839 0.261 -1 0 89 492.36365773587363 NaN 0 492.36376953125 PEAK HCD FTMS 0 0 0 28504 138283.375 0.21894794383579225 -8 0.06017303466796875 2 NaN NaN 2 G 1 -1 5.4846 0 0 0.5581 0 0 216.25805393746958 706.422285466469 922.6803394039387 0 0 0 0 0 0 0 0 0 G 0.5581 - 10 + NaN NaN 182687.8 NaN 22420 6084 28504 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28508 111.84 NaN 1164800 35 0 168130 0.41 + 28779 TTKKKKKKK 9 137 559.39257685351 1116.77060077382 2 559.392822265625 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 A 1 9 5.4846 0 0 0.49111 0 0 174.21049188949547 868.5122692754206 1042.7227611649162 0 0 0 0 0 0 0 0 0 A 0.49111 - 29 + NaN NaN 448987.5 NaN 22421 6085 28507 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28510 111.85 NaN 1359800 35 0 103230 0.327 -1 0 107 594.9056964115738 1187.7968398899475 2 594.9060668945312 MULTI HCD FTMS 0 0 0 28509 464884.9375 0.3721154043379184 4 -0.044708251953125 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.46174 0 0 157.1843678215376 956.5646968717494 1113.749064693287 0 0 0 0 0 0 0 0 0 A 0.46174 - 25 + NaN NaN 302448.3 NaN 22422 6086 28509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28511 111.85 NaN 892210 35 0 88905 0.261 + 15850 LPKKVHPKK 9 95 537.8609278990253 1073.7073028648506 2 537.8612060546875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LPKKVHPKK_ REV__ENSG00000152284|ENST00000282111|TCF7L1 4.3292370932331545 0.3181982124262546 2 AS 2 -1 4.6927 0 0 0.43706 0 0 175.1744608055232 737.4370340292384 912.6114948347615 0 0 0 0 0 0 0 0 0 AS 0.43706 - 22 + NaN NaN 222813.3 NaN 22423 6086 28509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28512 111.85 NaN 1980300 35 0 255710 0.261 + 23418 RLKTLTKIK 9 112 550.8792867576101 1099.74402058202 2 550.880126953125 MULTI HCD FTMS 0 0 0 28509 392602.5625 0.17086014202928604 -12 0.0888824462890625 3 Unmodified _RLKTLTKIK_ ENSG00000198028|ENST00000301480|ZNF560 0 0.3510170533115441 2 W 1 9 8.0989 0 0 0.73644 0 0 605.4860077419795 305.1599949580663 910.6460027000458 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.73644 - 21 + NaN NaN 388545 NaN 22424 6086 28509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28513 111.86 NaN 2197000 35 0 1538200 0.261 -1 0 90 625.1457129169178 4368.969055152224 7 625.4315795898438 MULTI HCD FTMS 0 0 0 28509 274400.53125 0.45755465523754935 19 -0.14636993408203125 4 NaN NaN 2 D 1 -1 3.4949 0 0 0.079993 0 0 3338.3587076762933 912.5393015847152 4250.898009261008 0 0 0 0 0 0 0 0 0 D 0.079993 - 17 + NaN NaN 428138.8 NaN 22425 6086 28509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28514 111.86 NaN 1269000 35 0 95219 0.262 + 23171 RFKVLLRV 8 112 515.8478556007866 1029.681158268373 2 515.84814453125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 5 Unmodified _RFKVLLRV_ ENST00000275732.5_1_7:100285918-100285987:-|nuORF 5.230669730166228 0.5342319408533849 2 T 1 8 3.8735 0 0 0.37618 0 0 431.2721863365112 494.34095333409874 925.6131396706099 0 0 0 0 0 0.2614393726401688 0 0 0 T 0.37618 - 41 + NaN NaN 282344.8 NaN 22426 6086 28509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28516 111.87 NaN 885320 35 0 142030 0.327 -1 0 98 603.4188305175859 1204.8231081019717 2 603.419677734375 MULTI HCD FTMS 0 0 0 28515 676957.25 0.7015096947158516 -11 0.09564208984375 1 NaN NaN 2 A 1 -1 6.0257 0 0 0.50013 0 0 482.3939164537981 648.3788546197874 1130.7727710735855 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.50013 - 37 + NaN NaN 237716.7 NaN 22427 6087 28515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28517 111.87 NaN 671260 35 0 49009 0.261 + 30286 VKKKKKKKG 9 83 536.3900563202136 NaN 0 536.3905029296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VKKKKKKKG_ REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF 0 0.29524684227089293 2 G 1 -1 5.4846 0 0 0.51221 0 0 216.25966285998987 794.4753361835807 1010.7349990435705 0 0 0 0 0 0 0 0 0 G 0.51221 + + 9 + NaN NaN 194163.3 NaN 22428 6087 28515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28518 111.87 NaN 1044300 35 0 168000 0.262 -1 0 85 448.3373577611743 NaN 0 448.33746337890625 PEAK HCD FTMS 0 0 0 28515 363980.4375 0.6507002275003333 -9 0.082183837890625 3 NaN NaN 2 A 1 -1 5.4846 0 0 0.61303 0 0 216.25748970857677 604.3529440566139 820.6104337651907 0 0 0 0 0 0 0 0 0 A 0.61303 - 9 + NaN NaN 250806.2 NaN 22429 6087 28515 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28522 111.89 NaN 1224500 35 0 109090 0.367 + 34826 YRILRIIK 8 120 537.8609278990253 1073.7073028648506 2 537.861083984375 MULTI HCD FTMS 0 0 0 28521 475500.0625 0.8045376637362944 1 -0.00611114501953125 1 Unmodified _YRILRIIK_ REV__ENSG00000188997|ENST00000340067|KCTD21 5.230669730166228 0.5342319408533849 2 A 1 -1 5.4846 0 0 0.5108 0 0 263.2263802678547 736.4336871468543 999.6600674147089 0 0 0 0 0 0 0 0 0 A 0.5108 - 33 + NaN NaN 404182.6 NaN 22430 6090 28521 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28525 111.9 NaN 1735600 35 0 226020 0.327 -1 0 122 581.4057943306551 1160.7970357281101 2 581.9081420898438 MULTI HCD FTMS 0 0 0 28524 805307.375 0.6158865419354247 8 -0.05181121826171875 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.47248 0 0 174.2105841886716 912.5372592812399 1086.7478434699115 0 0 0 0 0 0 0 0 0 A 0.47248 - 22 + NaN NaN 458582.8 NaN 22431 6092 28524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28527 111.91 NaN 1922800 35 0 251410 0.327 + 30484 VLVFIKKVAK 10 134 572.8926209742782 NaN 0 572.892822265625 PEAK HCD FTMS 0 0 0 28526 814681.5625 0.46959417688889554 4 -0.026336669921875 1 Unmodified _VLVFIKKVAK_ ENSG00000101017|ENST00000372285|CD40 1.4819007175156935 0.33891598740166873 2 AD 2 9 11.097 0 0 0.97018 0 0 421.3419452035293 533.3687170188863 954.7106622224155 0 0 0 0 0 0.5501648626366046 0 0.5228787452803376 0 AD 0.97018 - 24 + NaN NaN 470780.8 NaN 22432 6093 28526 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28529 111.92 NaN 2110100 35 0 224440 0.327 + 30315 VKTAKLKIR 9 149 528.866078170493 1055.7176034077859 2 528.8660278320312 MULTI HCD FTMS 0 0 0 28528 923018.6875 0.34491284867768957 -15 0.126251220703125 1 Unmodified _VKTAKLKIR_ ENST00000522207.1_1_8:86351138-86354561:+|nuORF 2.0597508629832335 0.3354026079994024 2 A 1 8 5.7133 0 0 0.54118 0 0 201.2115725165375 780.460170031227 981.6717425477646 0 0 0 0 0 0.2614393726401688 0 0 0 + A 0.54118 + + 32 + NaN NaN 483347.5 NaN 22433 6094 28528 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28531 111.92 NaN 933560 35 0 85649 0.393 + 23373 RKRRRPLP 8 127 539.8574786154451 1077.70040429769 2 539.8576049804688 MULTI HCD FTMS 0 0 0 28530 317384.53125 0.2539299962326681 -14 0.117156982421875 1 Unmodified _RKRRRPLP_ ENST00000298966.2_11:93232511-93276567:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.2522 0 0 912.6178980494464 0 912.6178980494464 0 10.395906230238126 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2522 - 52 + NaN NaN 353466.6 NaN 22434 6095 28530 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28533 111.93 NaN 1157600 35 0 221230 0.411 -1 0 112 470.3504088279735 938.6862647227471 2 470.3498840332031 MULTI HCD FTMS 0 0 0 28532 664914.25 1 0 0 1 NaN NaN 2 G 1 -1 6.9897 0 0 0.74463 0 0 216.25729402691314 662.3967492904525 878.6540433173657 0 0 0 0 0 0 0 0 0 G 0.74463 - 24 + NaN NaN 430203 NaN 22435 6096 28532 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28535 111.94 NaN 1693500 35 0 271010 0.327 -1 0 121 581.4057943306551 1160.7970357281101 2 581.4055786132812 MULTI HCD FTMS 0 0 0 28534 824283.0625 0.4538510372530408 8 -0.0563507080078125 1 NaN NaN 2 AD 2 -1 7.0783 0 0 0.60978 0 0 482.39360790012387 489.3420809381469 971.7356888382708 0 0 0 0 0 0.3252574989159953 0 0.5242275032520141 0 AD 0.60978 - 24 + NaN NaN 418623.7 NaN 22436 6097 28534 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28537 111.94 NaN 2659100 35 0 1341300 0.326 + 30459 VLRLRLKL 8 103 505.863207543433 1009.7118621536661 2 505.86376953125 MULTI HCD FTMS 0 0 0 28536 122782.90625 0.23178976450501193 -9 0.058074951171875 1 Unmodified _VLRLRLKL_ REV__ENSG00000214338|ENST00000525778|SOGA3 0 0.5419923896992614 2 G 1 -1 8.5392 0 0 0.8457 0 0 199.23079879495157 750.4490996755394 949.679898470491 0 0 0 0 0 0.3054621874040891 0 0 0 G 0.8457 - 67 + NaN NaN 522931.7 NaN 22437 6098 28536 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28539 111.95 NaN 1187900 35 0 244820 0.327 -1 0 98 583.8836078581344 1165.7526627830687 2 583.8836669921875 MULTI HCD FTMS 0 0 0 28538 400583 0.4968210197944635 9 -0.0720062255859375 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1576 0 0 1000.6701260172468 0 1000.6701260172468 0 8.010299956639813 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1576 - 28 + NaN NaN 315673.2 NaN 22438 6099 28538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28542 111.96 NaN 3012200 35 0 561390 0.327 + 28780 TTKKKKKKK 9 129 559.39257685351 1116.77060077382 2 559.3932495117188 MULTI HCD FTMS 0 0 0 28541 1934822.5 0.6828998800756624 -8 0.05202484130859375 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 A 1 9 3.9794 0 0 0.35633 0 0 174.21026321354776 868.5112348385994 1042.7214980521471 0 0 0 0 0 0 0 0 0 A 0.35633 - 32 + NaN NaN 584335.4 NaN 22439 6101 28541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28544 111.97 NaN 2843200 35 0 455650 0.327 + 22157 QKLVKTKKK 9 114 550.8792867576101 1099.74402058202 2 550.8787231445312 MULTI HCD FTMS 0 0 0 28543 1113083.625 0.4844125953914847 4 -0.03391265869140625 1 Unmodified _QKLVKTKKK_ REV__ENSG00000181090|ENST00000460843|EHMT1;REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF;REV__nc|ENSG00000181090|Q9H9B1-3|EHMT1;REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 0.45834013312273997 0.3475424938045562 2 W 1 -1 8.0989 0 0 0.73644 0 0 605.4860077419795 305.15992099449466 910.6459287364742 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.73644 - 23 + NaN NaN 411251.9 NaN 22440 6102 28543 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28546 111.97 NaN 915100 35 0 61723 0.354 -1 0 100 594.9056964115738 1187.7968398899475 2 594.9064331054688 MULTI HCD FTMS 0 0 0 28545 451823.4375 0.36166037565943016 21 -0.1725921630859375 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.46174 0 0 686.7000819327194 351.0360177773655 1037.736099710085 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.46174 - 41 + NaN NaN 323304 NaN 22441 6103 28545 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28548 111.98 NaN 2292400 35 0 254010 0.327 + 23172 RFKVLLRV 8 118 515.8478556007866 1029.681158268373 2 515.8479614257812 MULTI HCD FTMS 0 0 0 28547 285504.75 0.4546878452653728 13 -0.10637664794921875 1 Unmodified _RFKVLLRV_ ENST00000275732.5_1_7:100285918-100285987:-|nuORF 2.302733041254933 0.5385759549224092 2 H 1 8 3.4949 0 0 0.33941 0 0 194.09455041057112 695.5135481744315 889.6080985850026 0 0 0 0 0 0 0 0 0 H 0.33941 - 22 + NaN NaN 435106.3 NaN 22442 6104 28547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28549 111.98 NaN 694000 35 0 52964 0.261 -1 0 88 492.36381379272217 982.7130746522444 2 492.3638000488281 MULTI HCD FTMS 0 0 0 28547 314765.625 0.4250450870611338 4 -0.04071044921875 2 NaN NaN 2 G 1 -1 6.9897 0 0 0.71127 0 0 216.25798684763805 706.4230176772667 922.6810045249047 0 0 0 0 0 0 0 0 0 G 0.71127 - 19 + NaN NaN 197505.2 NaN 22443 6104 28547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28550 111.99 NaN 2501300 35 0 1453400 0.261 + 19659 NVLIIRALLLL 11 81 625.9333904200064 NaN 0 625.9335327148438 PEAK HCD FTMS 0 0 0 28547 61111.35546875 0.30117445374915774 1 -0.01210784912109375 3 Unmodified _NVLIIRALLLL_ REV__ENSG00000018699|ENST00000317907|TTC27 1.1933415558491238 0.338734977139133 2 A 1 -1 3.0989 0 0 0.24794 0 0 439.3624950960689 736.4343007557153 1175.7967958517843 0 0 0 0 0 0 0 0 0 A 0.24794 + + 8 + NaN NaN 472216.6 NaN 22444 6104 28547 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28552 111.99 NaN 653790 35 0 101320 0.327 -1 0 97 603.4188305175859 1204.8231081019717 2 603.4191284179688 MULTI HCD FTMS 0 0 0 28551 569003.25 0.5896403298728647 7 -0.05361175537109375 1 NaN NaN 2 H 1 -1 4.6041 0 0 0.38214 0 0 482.39075342774964 582.3526705377561 1064.7434239655058 0 0 0 0 0 0 0 0 0 H 0.38214 - 48 + NaN NaN 186103.8 NaN 22445 6105 28551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28553 112 NaN 2303000 35 0 361290 0.262 + 12253 KLKKTKKR 8 114 515.3664083938753 1028.7182638545505 2 515.365966796875 MULTI HCD FTMS 0 0 0 28551 776393 0.18209269643157014 -20 0.15360260009765625 2 Unmodified _KLKKTKKR_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 0.6903765706972694 0.5409681170271811 2 A 1 8 3.9794 0 0 0.38683 0 0 174.21067395819927 780.4590132896645 954.6696872478637 0 0 0 0 0 0 0 0 0 A 0.38683 - 27 + NaN NaN 440478.3 NaN 22446 6105 28551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28555 112 NaN 2002700 35 0 252710 0.327 + 16332 LRKVLAKGK 9 112 506.85293905056244 1011.6913251679249 2 506.8522644042969 MULTI HCD FTMS 0 0 0 28554 920592.125 0.2999418829121915 -14 0.09821319580078125 1 Unmodified _LRKVLAKGK_ OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant 0.5247636613948944 0.34703895399870666 2 A 1 8 5.4955 0 0 0.5432 0 0 201.2099650474791 736.4336307583337 937.6435958058128 0 0 0 0 0 0.23965182871044374 0 0 0 + A 0.5432 + + 39 + NaN NaN 402537.2 NaN 22447 6106 28554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28556 112.01 NaN 1173800 35 0 151630 0.261 -1 0 93 448.3280306547006 NaN 0 448.3373107910156 PEAK HCD FTMS 0 0 0 28554 57289.45703125 1 0 0 2 NaN NaN 2 A 1 -1 5.4846 0 0 0.61304 0 0 216.2389904326124 604.3550800422234 820.5940704748359 0 0 0 0 0 0 0 0 0 A 0.61304 - 4 + NaN NaN 284437 NaN 22448 6106 28554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28557 112.01 NaN 1063300 35 0 92349 0.261 + 31182 VVGLILIFL 9 116 493.83592551322863 985.6572980932573 2 493.83489990234375 MULTI HCD FTMS 0 0 0 28554 235605.203125 0.3898414349604014 -3 0.02764892578125 3 Unmodified _VVGLILIFL_ tr|U7SRD9|U7SRD9_FUSNUManganese/zinc/irontransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01564PE=3SV=1 0.6014990680409731 0.3464572424761564 2 K 1 9 10.242 0 0 1.0391 0 0 637.4299689484536 217.10785852603752 854.5378274744911 0 0 0 0 0 0.3252574989159953 0 0 0 K 1.0391 - 37 + NaN NaN 259956.2 NaN 22449 6106 28554 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28559 112.01 NaN 4371300 35 0 937640 0.327 + 28169 TKKKKKKKG 9 113 537.3795985913822 1072.7446442495643 2 537.3799438476562 MULTI HCD FTMS 0 0 0 28558 3117569.5 0.8354221547944458 -2 0.02176666259765625 1 Unmodified _TKKKKKKKG_ REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF 0.45834013312273997 0.3475424938045562 2 A 1 -1 3.9794 0 0 0.37096 0 0 174.2103711974599 824.4851740792881 998.6955452767479 0 0 0 0 0 0 0 0 0 A 0.37096 - 19 + NaN NaN 773468.8 NaN 22450 6107 28558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28561 112.02 NaN 2550000 35 0 780970 0.327 + 21138 PPLLLLKK 8 117 461.32984403811724 NaN 0 461.32952880859375 PEAK HCD FTMS 0 0 0 28560 911386.375 0.5235993049595029 11 -0.08394622802734375 1 Unmodified _PPLLLLKK_ REV__ENSG00000161542|ENST00000446526|PRPSAP1 0 0.38822285293237185 2 V 1 -1 6.9897 0 0 0.75922 0 0 460.35453468401295 358.19187341861567 818.5464081026287 0 0 0 0 0 0 0 0 0 V 0.75922 - 26 + NaN NaN 490326.1 NaN 22451 6108 28560 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28564 112.03 NaN 4805500 35 0 823510 0.327 + 30316 VKTAKLKIR 9 128 528.866078170493 1055.7176034077859 2 528.865966796875 MULTI HCD FTMS 0 0 0 28563 2499754.25 0.9341060706982288 1 -0.00608062744140625 1 Unmodified _VKTAKLKIR_ ENST00000522207.1_1_8:86351138-86354561:+|nuORF 0.6014990680409731 0.3464572424761564 2 A 1 8 5.4846 0 0 0.51951 0 0 201.20942042898167 780.4601332304925 981.6695536594741 0 0 0 0 0 0.3494850021680094 0 0 0 + A 0.51951 + + 22 + NaN NaN 551069.2 NaN 22452 6110 28563 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28566 112.04 NaN 1780500 35 0 279450 0.327 + 23374 RKRRRPLP 8 122 539.8574786154451 1077.70040429769 2 539.8578491210938 MULTI HCD FTMS 0 0 0 28565 1031431 0.8252175016618964 2 -0.01259613037109375 1 Unmodified _RKRRRPLP_ ENST00000298966.2_11:93232511-93276567:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.2972 0 0 912.6178675318682 0 912.6178675318682 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2972 - 33 + NaN NaN 444809.8 NaN 22453 6111 28565 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28569 112.05 NaN 3080300 35 0 1037500 0.327 + 30381 VLKRKPVLS 9 82 520.3530412665963 1038.6915295999925 2 520.352783203125 MULTI HCD FTMS 0 0 0 28568 2460604.5 1 0 0 1 Unmodified _VLKRKPVLS_ ENST00000262376.10_1_16:4930962-4931145:+|nuORF 2.0597508629832335 0.3354026079994024 2 C 1 9 5.4711 0 0 0.52673 0 0 601.4029686642488 331.24888025455317 932.651848918802 0 0 0 0 0 0.3252574989159953 0 0 0 C 0.52673 - 5 + NaN NaN 401367.4 NaN 22454 6113 28568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28570 112.06 NaN 2076200 35 0 305070 0.261 + 12067 KKAKVRKK 8 113 493.3534371315358 984.6923213298717 2 493.3531188964844 MULTI HCD FTMS 0 0 0 28568 952478.5625 0.15560566928729938 -16 0.1163330078125 2 Unmodified _KKAKVRKK_ REV__ENSG00000189134|ENST00000343684|NKAPL 0.6903765706972694 0.5409681170271811 2 K 1 -1 6.9897 0 0 0.70984 0 0 636.4652227964717 217.1079043024047 853.5731270988764 0 0 0 0 0 0 0 0 0 K 0.70984 + + 37 + NaN NaN 409354.8 NaN 22455 6113 28568 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28572 112.06 NaN 1056900 35 0 155210 0.411 -1 0 111 581.4057943306551 1160.7970357281101 2 581.4061279296875 MULTI HCD FTMS 0 0 0 28571 444290.1875 0.24462659929788744 25 -0.22013092041015625 1 NaN NaN 2 AD 2 -1 4.5391 0 0 0.39103 0 0 482.3943311674888 489.34140955142817 971.735740718917 0 0 0 0 0 0.2742275032520141 0 0.25 0 AD 0.39103 - 32 + NaN NaN 402963.7 NaN 22456 6114 28571 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28574 112.07 NaN 1082900 35 0 181690 0.327 -1 0 98 495.8311354267737 989.6477179203474 2 495.8318176269531 MULTI HCD FTMS 0 0 0 28573 525710.8125 0.2394786390312999 -19 0.1394805908203125 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.3636 0 0 824.5652574484709 0 824.5652574484709 0 11.505149978319906 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3636 - 44 + NaN NaN 264580.3 NaN 22457 6115 28573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28575 112.07 NaN 998460 35 0 194430 0.261 + 23934 RTRLRLPVR 9 100 583.8836078581344 1165.7526627830687 2 583.8836059570312 MULTI HCD FTMS 0 0 0 28573 302431.84375 0.3750895495570078 25 -0.2198944091796875 2 Unmodified _RTRLRLPVR_ REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF 1.6526216038709556 0.33848895094777925 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.1576 0 0 1000.6700497233015 0 1000.6700497233015 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1576 - 23 + NaN NaN 254654.8 NaN 22458 6115 28573 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28577 112.08 NaN 1659800 35 0 166840 0.327 + 9990 IEKVVKIP 8 123 463.30920102142676 NaN 0 463.3102722167969 PEAK HCD FTMS 0 0 0 28576 838157.25 0.7992407207312443 5 -0.04100799560546875 1 Unmodified _IEKVVKIP_ ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 4.75600775471527 0.38822285293237185 2 VR 2 7 3.6498 0 0 0.39474 0 0 361.2531543848473 305.16083704166255 666.4139914265098 0 0 0 0 0 0 0 0 0.3807196863200844 VR 0.39474 - 18 + NaN NaN 341230 NaN 22459 6116 28576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28578 112.08 NaN 1154800 35 0 73622 0.261 + 14978 LLILMVLK 8 127 471.82334224910267 941.6321315650054 2 471.8215026855469 MULTI HCD FTMS 0 0 0 28576 484146.5625 0.8598726432813038 3 -0.027435302734375 2 Unmodified _LLILMVLK_ REV__tr|U7SMH7|U7SMH7_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01873PE=4SV=1 0.7936320650641473 0.540814922690045 2 Q 1 -1 4.2082 0 0 0.4469 0 0 343.2255827035178 467.33621690075773 810.5617996042755 0 0 0 0 0 0.2614393726401688 0 0 0 Q 0.4469 - 60 + NaN NaN 269071.2 NaN 22460 6116 28576 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28580 112.09 NaN 1824100 35 0 323240 0.327 + 28781 TTKKKKKKK 9 114 559.39257685351 1116.77060077382 2 559.3927001953125 MULTI HCD FTMS 0 0 0 28579 1166735.5 0.41180187486449943 8 -0.06671905517578125 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 A 1 9 3.9794 0 0 0.35633 0 0 174.21068344997906 868.5109371493734 1042.7216205993525 0 0 0 0 0 0 0 0 0 A 0.35633 - 40 + NaN NaN 383827.6 NaN 22461 6117 28579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28581 112.09 NaN 1537200 35 0 193860 0.261 + 12076 KKELKKKAK 9 111 550.8792867576101 1099.74402058202 2 550.87939453125 MULTI HCD FTMS 0 0 0 28579 1038461.8125 0.4519372763282456 19 -0.1591033935546875 2 Unmodified _KKELKKKAK_ REV__ENSG00000182329|ENST00000498697|KIAA2012;REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012;REV__nc|ENSG00000182329|Q0VF49|KIAA2012 0.45834013312273997 0.3475424938045562 2 W 1 -1 8.0989 0 0 0.73644 0 0 605.485885671667 305.15839563541255 910.6442813070796 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.73644 - 19 + NaN NaN 327609 NaN 22462 6117 28579 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28583 112.1 NaN 3655800 35 0 770280 0.327 + 30321 VKVRVVRI 8 116 484.8398651415648 967.6651773499296 2 484.8397521972656 MULTI HCD FTMS 0 0 0 28582 1413575.5 0.2907443243352754 -13 0.10347747802734375 1 Unmodified _VKVRVVRI_ ENST00000492143.5_1_7:148514900-148516105:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF 0.7936320650641473 0.540814922690045 2 A 1 8 6.9061 0 0 0.71369 0 0 201.20964261990918 692.4061492078166 893.6157918277258 0 0 0 0 0 0.3807196863200844 0 0 0 A 0.71369 - 19 + NaN NaN 412974.8 NaN 22463 6118 28582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28584 112.1 NaN 1644500 35 0 146180 0.261 + 21363 PTKVALALL 9 142 463.30920102142676 NaN 0 463.3083190917969 PEAK HCD FTMS 0 0 0 28582 903160.75 0.8612260393454464 7 -0.0575103759765625 2 Unmodified _PTKVALALL_ ENSG00000095951|ENST00000379388|HIVEP1 6.723162845929126 0.26266733336404485 2 TQ 2 8 10.529 0 0 1.1387 0 0 361.2508350489098 331.2270601861938 692.4778952351036 0 0 0 0 0 0.3054621874040891 0 0 0.5 TQ 1.1387 - 29 + NaN NaN 341358.7 NaN 22464 6118 28582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28587 112.11 NaN 474830 35 0 53876 0.411 -1 0 112 603.4188305175859 1204.8231081019717 2 603.4194946289062 MULTI HCD FTMS 0 0 0 28586 257396.078125 0.2667315316979414 22 -0.19454193115234375 1 NaN NaN 2 H 1 -1 4.6041 0 0 0.38214 0 0 482.3922032140335 582.3528536432249 1064.7450568572583 0 0 0 0 0 0 0 0 0 H 0.38214 - 52 + NaN NaN 231827.4 NaN 22465 6120 28586 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28589 112.12 NaN 6081600 35 0 1319800 0.326 + 12254 KLKKTKKR 8 123 515.3664083938753 1028.7182638545505 2 515.3663330078125 MULTI HCD FTMS 0 0 0 28588 3904726 0.9158017732855128 -4 0.03185272216796875 1 Unmodified _KLKKTKKR_ ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-4|REST 0.6903765706972694 0.5409681170271811 2 A 1 8 3.9794 0 0 0.38683 0 0 174.21021068512988 780.4600072190807 954.6702179042106 0 0 0 0 0 0 0 0 0 A 0.38683 - 16 + NaN NaN 685208.8 NaN 22466 6121 28588 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28591 112.13 NaN 4553300 35 0 862030 0.326 + 28639 TRLRIIKL 8 98 506.85293905056244 1011.6913251679249 2 506.852783203125 MULTI HCD FTMS 0 0 0 28590 2903688 0.9460624553023799 2 -0.02138519287109375 1 Unmodified _TRLRIIKL_ nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG853|Q9UQG0|ERVK-11 0.6903765706972694 0.5409681170271811 2 A 1 8 7.034 0 0 0.69527 0 0 157.18348434388673 780.4596937670477 937.6431781109345 0 0 0 0 0 0.1549471895720985 0 0 0 A 0.69527 - 16 + NaN NaN 430536.4 NaN 22467 6122 28590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28592 112.13 NaN 1045700 35 0 156030 0.261 -1 0 85 448.3375264661677 894.6604999991354 2 448.33734130859375 MULTI HCD FTMS 0 0 0 28590 342008.625 0.47689600817953637 -17 0.1328887939453125 2 NaN NaN 2 A 1 -1 5.4846 0 0 0.61303 0 0 216.25780970610225 604.3546106584906 820.6124203645929 0 0 0 0 0 0 0 0 0 A 0.61303 - 10 + NaN NaN 252048.9 NaN 22468 6122 28590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28593 112.13 NaN 1057500 35 0 81065 0.261 -1 0 100 451.3630131761733 450.3557367095733 1 451.3634338378906 MULTI HCD FTMS 0 0 0 28590 585956.6875 0.08062576374822483 221 -1.7181320190429688 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 11.594 0 0 2.5744 0 0 285.2735661546889 0 285.2735661546889 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 2.5744 - 11 + NaN NaN 257004.5 NaN 22469 6122 28590 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28595 112.14 NaN 3293600 35 0 657630 0.327 + 25723 SKKKKKKKA 9 113 537.3795985913822 1072.7446442495643 2 537.3795776367188 MULTI HCD FTMS 0 0 0 28594 1923752.25 0.5155122443896322 14 -0.11986541748046875 1 Unmodified _SKKKKKKKA_ REV__ENST00000265052.9_1_3:127410904-127410982:-|nuORF 0.5247636613948944 0.34703895399870666 2 A 1 -1 3.9794 0 0 0.37096 0 0 174.2105174345932 824.4847843674469 998.6953018020401 0 0 0 0 0 0 0 0 0 A 0.37096 + + 24 + NaN NaN 571898.6 NaN 22470 6123 28594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28596 112.14 NaN 1774400 35 0 281700 0.261 -1 0 115 471.3402653194518 940.6659777057037 2 471.3392639160156 MULTI HCD FTMS 0 0 0 28594 421209.40625 0.06860109278025453 -16 0.12320709228515625 2 NaN NaN 2 H 1 -1 3.9794 0 0 0.42304 0 0 350.31589357218246 450.27936731510005 800.5952608872825 0 0 0 0 0 0 0 0 0 H 0.42304 - 39 + NaN NaN 366566.6 NaN 22471 6123 28594 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28599 112.15 NaN 1200900 35 0 87737 0.327 -1 0 115 449.81022270635725 897.6058924795145 2 449.8083801269531 MULTI HCD FTMS 0 0 0 28598 369949 0.6986700893630166 1 -0.00616455078125 1 NaN NaN 2 P 1 -1 4.6041 0 0 0.51293 0 0 677.4750616463099 120.05024133853749 797.5253029848474 0 0 0 0 0 0 0 0 0 P 0.51293 - 68 + NaN NaN 320164.8 NaN 22472 6125 28598 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28601 112.16 NaN 2743300 35 0 345580 0.327 -1 0 144 462.82679164735663 923.6390303615133 2 462.8262634277344 MULTI HCD FTMS 0 0 0 28600 1249307.5 0.27158141366483474 -13 0.10717010498046875 1 NaN NaN 2 H 1 -1 9.2694 0 0 1.0036 0 0 768.5714166913946 0 768.5714166913946 0 3.784809756568528 0 0 0 0 0 0 0 H 1.0036 - 24 + NaN NaN 425709 NaN 22473 6126 28600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28602 112.16 NaN 1420400 35 0 188420 0.261 + 23375 RKRRRPLP 8 126 539.8574786154451 1077.70040429769 2 539.8572998046875 MULTI HCD FTMS 0 0 0 28600 604932.4375 0.48398858939472567 17 -0.159088134765625 2 Unmodified _RKRRRPLP_ ENST00000298966.2_11:93232511-93276567:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 13.979 0 0 1.2972 0 0 912.6176539088214 0 912.6176539088214 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2972 - 49 + NaN NaN 305719 NaN 22474 6126 28600 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28604 112.17 NaN 3700000 35 0 1517700 0.327 + 14755 LHVKKKKA 8 87 476.3269324025613 950.6393118719226 2 476.3270263671875 MULTI HCD FTMS 0 0 0 28603 2745990.5 0.8932025618673398 -9 0.0724639892578125 1 Unmodified _LHVKKKKA_ ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;nc|ENSG00000197893|Q86VF7-4|NRAP 0.7936320650641473 0.540814922690045 2 G 1 8 3.4949 0 0 0.36763 0 0 140.15841751093973 750.4426973932249 890.6011149041647 0 0 0 0 0 0 0 0 0 G 0.36763 - 9 + NaN NaN 427543.9 NaN 22475 6127 28603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28605 112.17 NaN 2998200 35 0 411180 0.217 -1 0 151 462.82679164735663 923.6390303615133 2 462.8268127441406 MULTI HCD FTMS 0 0 0 28603 1110546.75 0.2414168299685128 -12 0.0999755859375 2 NaN NaN 2 AT 2 -1 7.0783 0 0 0.76635 0 0 289.2606903289516 459.2766207330688 748.5373110620204 0 0 0 0 0 0 0 0 0 AT 0.76635 - 17 + NaN NaN 409680.9 NaN 22476 6127 28603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28606 112.18 NaN 3139800 35 0 645740 0.256 -1 0 112 471.3402653194518 940.6659777057037 2 471.3406982421875 MULTI HCD FTMS 0 0 0 28603 1298821.375 0.21153508048314806 -12 0.0999755859375 3 NaN NaN 2 [RN][R{I|L}]RA 6 -1 4.7891 0 0 0.50912 0 0 0 171.18769824401753 171.18769824401753 0.1850060261058779 0 0 0 0 0 1.5228787452803376 0 0.3494850021680094 [RN][R{I|L}]RA 0.50912 - 47 NaN NaN 558776.3 NaN 22477 6127 28603 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28608 112.18 NaN 5904600 35 0 1404100 0.327 + 23353 RKKLKKKG 8 101 493.3534371315358 984.6923213298717 2 493.3540954589844 MULTI HCD FTMS 0 0 0 28607 4620862 0.7549065695578306 -1 0.01163482666015625 1 Unmodified _RKKLKKKG_ ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000442210.2_1_12:123465790-123467130:+|nuORF;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4 0 0.5419923896992614 2 K 1 7 6.9897 0 0 0.70984 0 0 636.4650091734248 217.10787378482658 853.5728829582514 0 0 0 0 0 0 0 0 0 + K 0.70984 + + 24 + NaN NaN 499107.8 NaN 22478 6128 28607 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28610 112.19 NaN 3332800 35 0 907060 0.327 -1 0 111 495.8311354267737 989.6477179203474 2 495.8312683105469 MULTI HCD FTMS 0 0 0 28609 2150941.25 0.9798247837755534 -5 0.04009246826171875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4126 0 0 824.5651811545256 0 824.5651811545256 0 10.484550065040281 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4126 - 46 + NaN NaN 512303.8 NaN 22479 6129 28609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28611 112.19 NaN 807350 35 0 123890 0.261 -1 0 97 581.4057943306551 1160.7970357281101 2 581.4059448242188 MULTI HCD FTMS 0 0 0 28609 518955.03125 0.28573713319566935 40 -0.35446929931640625 2 NaN NaN 2 P 1 -1 3.9794 0 0 0.34282 0 0 711.5304169310383 349.18561731510005 1060.7160342461384 0 0 0 0 0 0 0 0 0 P 0.34282 - 59 + NaN NaN 226060.9 NaN 22480 6129 28609 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28615 112.21 NaN 1612300 35 0 270220 0.327 -1 0 114 559.4055590581241 NaN 0 559.3928833007812 PEAK HCD FTMS 0 0 0 28614 84140.9921875 1 0 0 1 NaN NaN 2 A 1 -1 5.4846 0 0 0.4911 0 0 174.23658360338226 868.511805702186 1042.7483893055683 0 0 0 0 0 0 0 0 0 A 0.4911 - 44 + NaN NaN 333077.7 NaN 22481 6132 28614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28616 112.21 NaN 294360 35 0 87625 0.261 -1 QRKLKVTICV 10 52 622.8796678820424 NaN 0 622.8798828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _QRKLKVTIC(Carbamidomethyl (C))V_ ENST00000482015.5_1_7:48134363-48146493:+|nuORF 1.844237919475145 0.33860587697544825 2 {I|L} 1 -1 6.9897 0 0 0.56199 0 0 278.2338708209223 849.4021314891654 1127.6360023100876 0 0 0 0 0 0 0 0 0 {I|L} 0.56199 + + 6 + NaN NaN 137712.8 NaN 22482 6132 28614 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28618 112.22 NaN 7539000 35 0 1703700 0.327 + 30322 VKVRVVRI 8 101 484.8398651415648 967.6651773499296 2 484.8402099609375 MULTI HCD FTMS 0 0 0 28617 3531602.75 0.7263803421673272 2 -0.02159881591796875 1 Unmodified _VKVRVVRI_ ENST00000492143.5_1_7:148514900-148516105:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF 0.7936320650641473 0.540814922690045 2 A 1 8 8.9794 0 0 0.92794 0 0 201.20856331138697 692.4069223325909 893.6154856439778 0 0 0 0 0 0.5 0 0 0 A 0.92794 - 16 + NaN NaN 539044.6 NaN 22483 6133 28617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28619 112.22 NaN 1133700 35 0 131480 0.261 + 23419 RLKTLTKIK 9 105 550.8792867576101 1099.74402058202 2 550.8795166015625 MULTI HCD FTMS 0 0 0 28617 568881.1875 0.24757637819554199 35 -0.312225341796875 2 Unmodified _RLKTLTKIK_ ENSG00000198028|ENST00000301480|ZNF560 0 0.3510170533115441 2 W 1 9 7.232 0 0 0.65761 0 0 605.4860077419795 305.15912805728755 910.6451357992671 0 0 0 0 0 0.3252574989159953 0 0 0 W 0.65761 - 21 + NaN NaN 272437.8 NaN 22484 6133 28617 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28621 112.23 NaN 1555000 35 0 271820 0.327 -1 0 108 449.32717602193026 896.6397991106605 2 449.32672119140625 MULTI HCD FTMS 0 0 0 28620 599673.625 0.09180973176967712 -20 0.1652984619140625 1 NaN NaN 2 AD 2 -1 6.7217 0 0 0.74965 0 0 262.262246949699 445.31379114322505 707.576038092924 0 0 0 0 0 0 0 0.2742275032520141 0 AD 0.74965 - 34 + NaN NaN 347851.1 NaN 22485 6134 28620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28622 112.23 NaN 536280 35 0 29621 0.261 + 16560 LTVIKKLKVF 10 88 594.90625 NaN 0 594.90625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LTVIKKLKVF_ REV__ENSG00000185842|ENST00000682510|DNAH14;REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14;REV__nc|ENSG00000185842|Q0VDD8|DNAH14 0.35063188157827746 0.339884196735365 2 C(Carbamidomethyl (C)) 1 -1 7.8567 0 0 0.66145 0 0 719.5661708966812 305.17316614322505 1024.7393370399063 0 0 0 0 0 0.3252574989159953 0 0 0 C(Carbamidomethyl (C)) 0.66145 - 9 + NaN NaN 179332.3 NaN 22486 6134 28620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28623 112.23 NaN 723280 35 0 150040 0.261 + 833 AVVGLQKPVKK 11 74 583.8837806874976 NaN 0 583.8843994140625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _AVVGLQKPVKK_ REV__ENSG00000157741|ENST00000473989|UBN2;REV__nc|ENSG00000157741|Q6ZU65-2|UBN2;REV__UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;REV__UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant 5.731851221503515 0.3258605322397891 2 K 1 -1 3.0989 0 0 0.26583 0 0 839.4893193322233 195.13845239810783 1034.6277717303312 0 0 0 0 0 0 0 0 0 K 0.26583 + + 4 + NaN NaN 217935 NaN 22487 6134 28620 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28626 112.25 NaN 4146000 35 0 766770 0.327 + 23345 RKKKKIKT 8 110 515.3664083938753 1028.7182638545505 2 515.36669921875 MULTI HCD FTMS 0 0 0 28625 2132023.25 0.5000378190520774 11 -0.10233306884765625 1 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 2 A 1 8 5.4846 0 0 0.53314 0 0 174.21059803990607 780.4591446979306 954.6697427378367 0 0 0 0 0 0 0 0 0 A 0.53314 - 27 + NaN NaN 547794.3 NaN 22488 6136 28625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28627 112.25 NaN 3013800 35 0 533010 0.224 + 28640 TRLRIIKL 8 108 506.85293905056244 1011.6913251679249 2 506.85302734375 MULTI HCD FTMS 0 0 0 28625 1706648.5 0.5560501232391785 16 -0.1397552490234375 2 Unmodified _TRLRIIKL_ nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG853|Q9UQG0|ERVK-11 0.6903765706972694 0.5409681170271811 2 A 1 8 5.7268 0 0 0.56606 0 0 157.1835926815483 780.459107899086 937.6427005806343 0 0 0 0 0 0.1747425010840047 0 0 0 A 0.56606 - 22 + NaN NaN 438843.8 NaN 22489 6136 28625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28628 112.25 NaN 398970 35 0 51133 0.261 -1 0 84 603.4188305175859 1204.8231081019717 2 603.41796875 MULTI HCD FTMS 0 0 0 28625 67378.59375 0.06982233624345685 38 -0.34537506103515625 3 NaN NaN 2 PN 2 -1 5.0886 0 0 0.42236 0 0 685.5554211896655 305.1594332330688 990.7148544227343 0 0 0 0 0 0 0 0 0 PN 0.42236 - 60 + NaN NaN 166945.2 NaN 22490 6136 28625 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28630 112.26 NaN 1634400 35 0 347780 0.326 + 12086 KKKAILTT 8 108 451.80501214900283 901.5954713648057 2 451.8052062988281 MULTI HCD FTMS 0 0 0 28629 581238.375 0.22306811235604262 -16 0.1387176513671875 1 Unmodified _KKKAILTT_ ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.4968 0 0 736.5128583050385 0 736.5128583050385 0 2.284700126913391 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4968 - 33 + NaN NaN 381986.1 NaN 22491 6137 28629 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28632 112.27 NaN 3303100 35 0 856550 0.327 -1 0 95 473.81800332059424 945.6214537079885 2 473.81805419921875 MULTI HCD FTMS 0 0 0 28631 1903917.375 0.7224472273319262 -1 0.0119781494140625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.4783 0 0 780.5386728015417 0 780.5386728015417 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4783 - 14 + NaN NaN 479907.7 NaN 22492 6138 28631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28633 112.27 NaN 1932500 35 0 344130 0.261 + 28170 TKKKKKKKG 9 108 537.3795985913822 1072.7446442495643 2 537.3799438476562 MULTI HCD FTMS 0 0 0 28631 1063894.75 0.2850942840310371 29 -0.2509307861328125 2 Unmodified _TKKKKKKKG_ REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF 0.45834013312273997 0.3475424938045562 2 A 1 -1 3.0989 0 0 0.28888 0 0 174.21058342999805 824.4849994040671 998.6955828340651 0 0 0 0 0 0 0 0 0 A 0.28888 - 21 + NaN NaN 380685.3 NaN 22493 6138 28631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28634 112.28 NaN 808520 35 0 179520 0.261 + 14907 LLAAILFVPLP 11 85 583.8837806874976 NaN 0 583.8836669921875 PEAK HCD FTMS 0 0 0 28631 132505.515625 0.6219188978178449 -8 0.07363128662109375 3 Unmodified _LLAAILFVPLP_ REV__ENST00000497611.1_1_1:91966987-91967233:+|nuORF 1.4819007175156935 0.3379164178981577 2 K 1 -1 2.4743 0 0 0.21224 0 0 839.4894986653994 195.1388338678344 1034.6283325332338 0 0 0 0 0 0 0 0 0 K 0.21224 - 12 + NaN NaN 211131.3 NaN 22494 6138 28631 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28636 112.28 NaN 5366000 35 0 1165300 0.327 -1 0 119 462.82679164735663 923.6390303615133 2 462.8266296386719 MULTI HCD FTMS 0 0 0 28635 4600121.5 1 0 0 1 NaN NaN 2 AT 2 -1 9.9656 0 0 1.0789 0 0 289.2623303735675 459.2777193658813 748.5400497394488 0 0 0 0 0 0 0 0.28872548999643577 0 AT 1.0789 - 23 + NaN NaN 465881 NaN 22495 6139 28635 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28638 112.29 NaN 3099400 35 0 1218100 0.327 + 14756 LHVKKKKA 8 86 476.3269324025613 950.6393118719226 2 476.3265686035156 MULTI HCD FTMS 0 0 0 28637 2419479.75 0.7869967179734055 4 -0.03975677490234375 1 Unmodified _LHVKKKKA_ ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;nc|ENSG00000197893|Q86VF7-4|NRAP 0.7936320650641473 0.540814922690045 2 R 1 8 2.4743 0 0 0.26027 0 0 378.2983827721163 413.22529016666255 791.5236729387789 0 0 0 0 0 0 0 0 0 R 0.26027 - 12 + NaN NaN 444509.4 NaN 22496 6140 28637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28639 112.29 NaN 403260 35 0 50625 0.261 + 10278 IKLGKKLVPIP 11 79 603.4191578059742 1204.8237626787484 2 603.921142578125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IKLGKKLVPIP_ REV__ENSG00000185842|ENST00000682510|DNAH14;REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 0.3070304955306653 0.41757413505135293 2 A 1 -1 3.0989 0 0 0.25721 0 0 438.3708951023796 692.4063493707329 1130.7772444731124 0 0 0 0 0 0 0 0 0 A 0.25721 - 20 + NaN NaN 169157.2 NaN 22497 6140 28637 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28641 112.3 NaN 7106900 35 0 1778200 0.327 -1 0 92 471.3402653194518 940.6659777057037 2 471.34014892578125 MULTI HCD FTMS 0 0 0 28640 4687226 0.7633942189723388 2 -0.0215911865234375 1 NaN NaN 2 A 1 -1 4.6041 0 0 0.48945 0 0 262.26388628120986 604.3548156841053 866.6187019653153 0 0 0 0 0 0 0 0 0 A 0.48945 - 18 + NaN NaN 456699 NaN 22498 6141 28640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28642 112.3 NaN 2471200 35 0 1074500 0.261 -1 0 91 432.3005029506775 862.5864529681551 2 432.30047607421875 MULTI HCD FTMS 0 0 0 28640 1846924.5 0.47724168867518224 -10 0.09476470947265625 2 NaN NaN 2 {[QN]|[E{I|L}]|[KN]}P 3 -1 5.6864 0 0 0.65922 0 0 0 520.3620321520019 520.3620321520019 1.3946154301689981 0 0 0 0 0 0 0 0 {[QN]|[E{I|L}]|[KN]}P 0.65922 - 7 NaN NaN 469364.9 NaN 22499 6141 28640 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28644 112.31 NaN 4993800 35 0 1140900 0.327 + 23962 RVKAKKKK 8 107 493.3534371315358 984.6923213298717 2 493.35333251953125 MULTI HCD FTMS 0 0 0 28643 3421939 0.559039467468657 13 -0.10364532470703125 1 Unmodified _RVKAKKKK_ ENSG00000189134|ENST00000343684|NKAPL 0.6903765706972694 0.5409681170271811 2 K 1 7 6.9897 0 0 0.70984 0 0 636.4650702085811 217.1079043024047 853.5729745109858 0 0 0 0 0 0 0 0 0 + K 0.70984 + + 22 + NaN NaN 621058.4 NaN 22500 6142 28643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28645 112.31 NaN 2121900 35 0 517800 0.259 -1 0 117 495.8311354267737 989.6477179203474 2 495.8310546875 MULTI HCD FTMS 0 0 0 28643 1374517.75 0.626138234686517 8 -0.0635528564453125 2 NaN NaN 2 {I|L}EV{M(Oxidation (M))|F} 4 -1 14.157 0 0 1.4305 0 0 483.37820045443175 0 483.37820045443175 0 11.682437647924218 0 0 0 0 0 0 0 {I|L}EV{M(Oxidation (M))|F} 1.4305 - 55 + NaN NaN 432646.7 NaN 22501 6142 28643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28646 112.31 NaN 327450 35 0 41763 0.261 + 16194 LPVLVVLRVVV 11 65 603.4191578059742 1204.8237626787484 2 603.9205932617188 MULTI HCD FTMS 0 0 0 28643 140508.59375 0.7794720492022038 2 -0.02179718017578125 3 Unmodified _LPVLVVLRVVV_ REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF;REV__nc|ENSG00000226800|Q8N1I8|CACTIN-AS1 0.35063188157827746 0.41738291418376766 2 AH 2 -1 4.464 0 0 0.37051 0 0 394.3418982079633 599.3729952447874 993.7148934527506 0 0 0 0 0 0 0 0 0 AH 0.37051 - 20 + NaN NaN 155079.9 NaN 22502 6142 28643 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28648 112.32 NaN 598040 35 0 90466 0.327 -1 0 90 581.4057943306551 1160.7970357281101 2 581.4060668945312 MULTI HCD FTMS 0 0 0 28647 250729.21875 0.1380517460278787 54 -0.46926116943359375 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.34282 0 0 174.20984695738997 912.5363080290803 1086.7461549864702 0 0 0 0 0 0 0 0 0 A 0.34282 - 25 + NaN NaN 191832.2 NaN 22503 6143 28647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28649 112.32 NaN 420020 35 0 48371 0.261 + 10279 IKLGKKLVPIP 11 86 603.4191578059742 1204.8237626787484 2 603.92138671875 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _IKLGKKLVPIP_ REV__ENSG00000185842|ENST00000682510|DNAH14;REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 0.3070304955306653 0.41757413505135293 2 {I|L} 1 -1 3.0989 0 0 0.25721 0 0 791.5963894871453 297.1102388971313 1088.7066283842767 0 0 0 0 0 0 0 0 0 {I|L} 0.25721 + + 32 + NaN NaN 156197 NaN 22504 6143 28647 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28651 112.33 NaN 964810 35 0 132840 0.411 + 28782 TTKKKKKKK 9 131 559.39257685351 1116.77060077382 2 559.39306640625 MULTI HCD FTMS 0 0 0 28650 427953.3125 0.15104706803039167 35 -0.3063507080078125 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 A 1 9 5.4846 0 0 0.49111 0 0 174.2104103231241 868.5117962050623 1042.7222065281865 0 0 0 0 0 0 0 0 0 A 0.49111 - 49 + NaN NaN 385691.4 NaN 22505 6144 28650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28654 112.34 NaN 840320 35 0 81893 0.36 + 12077 KKELKKKAK 9 111 550.8792867576101 1099.74402058202 2 550.8800659179688 MULTI HCD FTMS 0 0 0 28653 182443.546875 0.07939920242214213 48 -0.4272918701171875 1 Unmodified _KKELKKKAK_ REV__ENSG00000182329|ENST00000498697|KIAA2012;REV__nc|ENSG00000182329|Q0VF49-2|KIAA2012;REV__nc|ENSG00000182329|Q0VF49|KIAA2012 0.45834013312273997 0.3475424938045562 2 W 1 -1 6.9897 0 0 0.63558 0 0 605.4860992947139 305.1600435846313 910.6461428793452 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.63558 - 25 + NaN NaN 315466.2 NaN 22506 6146 28653 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28656 112.35 NaN 6588100 35 0 1992500 0.327 -1 0 78 449.32717602193026 896.6397991106605 2 449.3271789550781 MULTI HCD FTMS 0 0 0 28655 5340595.5 0.8176424973590336 -7 0.059844970703125 1 NaN NaN 2 AD 2 -1 6.6291 0 0 0.73933 0 0 262.26406780418307 445.3115633600219 707.575631164205 0 0 0 0 0 0 0 0.3252574989159953 0 AD 0.73933 - 24 + NaN NaN 440610 NaN 22507 6147 28655 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28658 112.35 NaN 2586200 35 0 558910 0.327 -1 0 82 418.8007331257248 835.5869133182496 2 418.80035400390625 MULTI HCD FTMS 0 0 0 28657 981332.5 0.27141365308175186 -10 0.0854034423828125 1 NaN NaN 2 P 1 -1 7.034 0 0 0.84181 0 0 615.456113002623 120.05020319156483 735.5063161941879 0 0 0 0 0 0.3054621874040891 0 0 0 P 0.84181 - 21 + NaN NaN 352627 NaN 22508 6148 28657 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28660 112.36 NaN 2925300 35 0 680670 0.327 -1 0 124 427.31391601997484 852.6132791067497 2 427.3138732910156 MULTI HCD FTMS 0 0 0 28659 1548673.625 0.2803891413848349 -9 0.072723388671875 1 NaN NaN 2 P 1 -1 5.4846 0 0 0.64326 0 0 535.4252735909279 217.10799585513908 752.5332694460669 0 0 0 0 0 0 0 0 0 P 0.64326 - 17 + NaN NaN 403100.3 NaN 22509 6149 28659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28661 112.37 NaN 1130700 35 0 99776 0.261 + 23376 RKRRRPLP 8 113 539.8574786154451 1077.70040429769 2 539.8570556640625 MULTI HCD FTMS 0 0 0 28659 129779.921875 0.10383308519480566 40 -0.36438751220703125 2 Unmodified _RKRRRPLP_ ENST00000298966.2_11:93232511-93276567:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 12.474 0 0 1.1575 0 0 912.6177454615557 0 912.6177454615557 0 9.3753063169585 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1575 - 36 + NaN NaN 268605.4 NaN 22510 6149 28659 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28663 112.37 NaN 3283500 35 0 470550 0.326 + 28182 TKKRKKKL 8 105 515.3664083938753 1028.7182638545505 2 515.3663940429688 MULTI HCD FTMS 0 0 0 28662 1292052.625 0.30303383263081757 25 -0.228179931640625 1 Unmodified _TKKRKKKL_ REV__ENST00000369484.7_3_X:154290140-154290236:-|nuORF 0.6014990680409731 0.5410999795511968 2 A 1 -1 3.9794 0 0 0.38683 0 0 174.21061201286437 780.4591938206463 954.6698058335107 0 0 0 0 0 0 0 0 0 A 0.38683 - 27 + NaN NaN 521363.4 NaN 22511 6150 28662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28664 112.37 NaN 2095600 35 0 332120 0.261 + 28641 TRLRIIKL 8 119 506.85293905056244 1011.6913251679249 2 506.85296630859375 MULTI HCD FTMS 0 0 0 28662 1166009.125 0.3799021987563676 30 -0.27313995361328125 2 Unmodified _TRLRIIKL_ nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG853|Q9UQG0|ERVK-11 0.6903765706972694 0.5409681170271811 2 A 1 8 5.401 0 0 0.53386 0 0 201.20891705393473 736.4345885869234 937.6435056408582 0 0 0 0 0 0.2302046884880938 0 0 0 A 0.53386 - 68 + NaN NaN 410929.9 NaN 22512 6150 28662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28666 112.38 NaN 3619200 35 0 1152400 0.327 + 25730 SKKVVTKL 8 119 451.80501214900283 901.5954713648057 2 451.8048095703125 MULTI HCD FTMS 0 0 0 28665 1965746.25 0.7544156136601776 -2 0.0179290771484375 1 Unmodified _SKKVVTKL_ REV__ENSG00000156802|ENST00000287394|ATAD2;REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF 1.844237919475145 0.5392561982033289 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.4968 0 0 736.5128583050385 0 736.5128583050385 0 10.395906230238126 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4968 - 31 + NaN NaN 492267.1 NaN 22513 6151 28665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28669 112.39 NaN 2870400 35 0 653700 0.326 -1 0 117 473.81800332059424 945.6214537079885 2 473.81768798828125 MULTI HCD FTMS 0 0 0 28668 1491818.375 0.566075010845242 14 -0.12822723388671875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 14.604 0 0 1.5444 0 0 780.5388711657995 0 780.5388711657995 0 10.6246936830415 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5444 - 56 + NaN NaN 537998.8 NaN 22514 6153 28668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28670 112.4 NaN 1529500 35 0 245800 0.261 + 12170 KKKKTKKKG 9 107 537.3795985913822 1072.7446442495643 2 537.37939453125 MULTI HCD FTMS 0 0 0 28668 702733.8125 0.18831317020700455 44 -0.3959808349609375 2 Unmodified _KKKKTKKKG_ ENST00000360264.7_1_7:101898640-101898772:+|nuORF 0 0.3510170533115441 2 A 1 9 3.9794 0 0 0.37096 0 0 262.2624894477478 736.4338325096894 998.6963219574372 0 0 0 0 0 0 0 0 0 A 0.37096 - 17 + NaN NaN 330676.5 NaN 22515 6153 28668 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28672 112.4 NaN 5076800 35 0 1073100 0.327 -1 0 126 462.82679164735663 923.6390303615133 2 462.826904296875 MULTI HCD FTMS 0 0 0 28671 2388205.25 0.5191613417167351 15 -0.14052581787109375 1 NaN NaN 2 T 1 -1 5.4846 0 0 0.5938 0 0 360.28741409808373 459.27729211978755 819.5647062178713 0 0 0 0 0 0 0 0 0 T 0.5938 - 24 + NaN NaN 462144.6 NaN 22516 6154 28671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28673 112.41 NaN 329880 35 0 32817 0.261 + 12047 KILQLIRIPL 10 78 603.9204711914062 NaN 0 603.9204711914062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KILQLIRIPL_ ENSG00000164037|ENST00000296422|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1 1.6526216038709556 0.33876987398426067 2 V 1 10 6.5938 0 0 0.54728 0 0 868.5950634613115 234.13584314517814 1102.7309066064897 0 0 0 0 0 0.5 0 0 0 V 0.54728 - 27 + NaN NaN 130771.6 NaN 22517 6154 28671 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28675 112.41 NaN 2982900 35 0 730980 0.327 -1 0 122 429.7917497337814 857.5689465343628 2 429.7915954589844 MULTI HCD FTMS 0 0 0 28674 1768462.5 0.7640357279063541 -3 0.0243377685546875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.5736 0 0 692.4862876982285 0 692.4862876982285 0 10.395906230238126 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5736 - 109 + NaN NaN 554524 NaN 22518 6155 28674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28676 112.41 NaN 1849200 35 0 658510 0.258 + 14757 LHVKKKKA 8 76 476.3269324025613 950.6393118719226 2 476.3266906738281 MULTI HCD FTMS 0 0 0 28674 1378566.125 0.44841334831767676 19 -0.18128204345703125 2 Unmodified _LHVKKKKA_ ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;nc|ENSG00000197893|Q86VF7-4|NRAP 0.7936320650641473 0.540814922690045 2 A 1 7 4.3361 0 0 0.45612 0 0 228.21026784387635 648.3812960260374 876.5915638699137 0 0 0 0 0 0.1861818737241735 0 0 0 + A 0.45612 + + 21 + NaN NaN 361647.6 NaN 22519 6155 28674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28677 112.42 NaN 397260 35 0 60911 0.261 + 23833 RRSAPKGRKT 10 65 578.8535766601562 NaN 0 578.8535766601562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RRSAPKGRKT_ ENSG00000239697|ENST00000293825|TNFSF12;nc|ENSG00000239697|O43508-2|TNFSF12 1.3295316138638542 0.339046394236575 2 {I|L} 1 10 3.6006 0 0 0.31155 0 0 578.235388487405 461.3386629693969 1039.574051456802 0 0 0 0 0 0.28872548999643577 0 0 0 {I|L} 0.31155 - 2 + NaN NaN 149740.1 NaN 22520 6155 28674 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28679 112.42 NaN 3147400 35 0 1479000 0.327 -1 0 73 432.3005029506775 862.5864529681551 2 432.3005065917969 MULTI HCD FTMS 0 0 0 28678 2464538.25 0.6368318771203578 5 -0.04306793212890625 1 NaN NaN 2 P 1 -1 8.0989 0 0 0.93891 0 0 642.4557289464739 120.05014215640858 762.5058711028825 0 0 0 0 0 0.3494850021680094 0 0 0 P 0.93891 - 4 + NaN NaN 461370.8 NaN 22521 6156 28678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28680 112.43 NaN 5100900 35 0 1173600 0.19 -1 0 112 471.3402653194518 940.6659777057037 2 471.340087890625 MULTI HCD FTMS 0 0 0 28678 3434640.75 0.5593894753094513 17 -0.161468505859375 2 NaN NaN 2 A 1 -1 3.9794 0 0 0.42304 0 0 218.2366962615135 648.3810243391961 866.6177206007096 0 0 0 0 0 0 0 0 0 A 0.42304 - 26 + NaN NaN 508563 NaN 22522 6156 28678 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28682 112.43 NaN 3389300 35 0 685440 0.326 + 12071 KKARKKKV 8 103 493.3534371315358 984.6923213298717 2 493.35357666015625 MULTI HCD FTMS 0 0 0 28681 2001582.375 0.32699692923066415 28 -0.25959014892578125 1 Unmodified _KKARKKKV_ ENSG00000103496|ENST00000313843|STX4;ENST00000487411.5_1_16:31045754-31051121:+|nuORF;ENST00000493902.5_1_16:31047079-31051121:+|nuORF;nc|ENSG00000103496|Q12846-2|STX4 0.6903765706972694 0.5409681170271811 2 K 1 7 6.9897 0 0 0.70984 0 0 636.4651922788936 217.1079043024047 853.5730965812983 0 0 0 0 0 0 0 0 0 + K 0.70984 + + 28 + NaN NaN 552167.6 NaN 22523 6157 28681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28683 112.43 NaN 1702900 35 0 292730 0.261 + 35212 YVLKLLKL 8 129 495.34087412349976 988.6671953137995 2 495.8312683105469 MULTI HCD FTMS 0 0 0 28681 113437.703125 0.8619025622085371 -2 0.02056121826171875 2 Unmodified _YVLKLLKL_ ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 0 0.5419923896992614 2 {M(Oxidation (M))|F} 1 8 13.099 0 0 1.3249 0 0 823.5846738067668 0 823.5846738067668 0 10 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3249 - 42 + NaN NaN 339811.2 NaN 22524 6157 28681 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28686 112.45 NaN 2079500 35 0 582610 0.327 + 30278 VKKKGIAA 8 128 407.77855549071154 813.5425580482231 2 407.77880859375 MULTI HCD FTMS 0 0 0 28685 382290.9375 0.20259652843175546 -9 0.0765228271484375 1 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 0 0.5419923896992614 2 {M(Oxidation (M))|F} 1 8 12.218 0 0 1.5019 0 0 648.4600060236122 0 648.4600060236122 0 8.723637474483468 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5019 - 15 + NaN NaN 424635.2 NaN 22525 6159 28685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28687 112.45 NaN 451820 35 0 57362 0.261 -1 0 87 581.4057943306551 1160.7970357281101 2 581.4065551757812 MULTI HCD FTMS 0 0 0 28685 183200.5 0.10087036933416997 70 -0.6110992431640625 2 NaN NaN 2 ND 2 -1 3.9794 0 0 0.34282 0 0 104.2122873269271 824.4862546076133 928.6985419345405 0 0 0 0 0 0 0 0 0 ND 0.34282 - 17 + NaN NaN 175971 NaN 22526 6159 28685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28688 112.45 NaN 672930 35 0 154050 0.261 -1 0 71 583.4307471553117 NaN 0 583.8827514648438 PEAK HCD FTMS 0 0 0 28685 118083.015625 0.7178609067926093 -7 0.06076812744140625 3 NaN NaN 2 V 1 -1 0.71334 0 0 0.061239 0 0 856.6640017795702 206.08550440006096 1062.7495061796312 0 0 0 0 0 0 0 0 0 V 0.061239 - 5 + NaN NaN 193951.4 NaN 22527 6159 28685 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28691 112.47 NaN 801940 35 0 118060 0.327 + 28783 TTKKKKKKK 9 92 559.39257685351 1116.77060077382 2 559.3931274414062 MULTI HCD FTMS 0 0 0 28690 335841.125 0.1185358677537477 52 -0.461883544921875 1 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 P 1 9 3.0989 0 0 0.27749 0 0 667.5034326603419 349.18549524478755 1016.6889279051295 0 0 0 0 0 0 0 0 0 P 0.27749 - 50 + NaN NaN 206587 NaN 22528 6161 28690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28692 112.47 NaN 481530 35 0 60615 0.261 + 20983 PLLIQSFLAK 10 77 565.3530908557917 NaN 0 565.3534545898438 PEAK HCD FTMS 0 0 0 28690 53225.9609375 0.24283294330397967 2 -0.02031707763671875 2 Unmodified _PLLIQSFLAK_ REV__ENSG00000107331|ENST00000341511|ABCA2;REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF;REV__ENST00000487109.5_1_9:139906084-139911410:-|nuORF;REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2;REV__nc|ENSG00000107331|Q9BZC7-4|ABCA2;REV__nc|ENSG00000107331|Q9BZC7|ABCA2 5.731851221503515 0.33527861879838866 2 Y 1 -1 5.4846 0 0 0.48592 0 0 635.3985512410771 327.19870935611567 962.5972605971929 0 0 0 0 0 0 0 0 0 Y 0.48592 - 22 + NaN NaN 163152.1 NaN 22529 6161 28690 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28694 112.47 NaN 4654100 35 0 1392200 0.327 -1 0 80 449.32717602193026 896.6397991106605 2 449.3270568847656 MULTI HCD FTMS 0 0 0 28693 3736999.25 0.5721327143010242 8 -0.0747833251953125 1 NaN NaN 2 AD 2 -1 7.0649 0 0 0.78793 0 0 262.2641664985874 445.3143404596313 707.5785069582187 0 0 0 0 0 0 0 0.3252574989159953 0 AD 0.78793 - 31 + NaN NaN 428451.3 NaN 22530 6162 28693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28695 112.48 NaN 4185100 35 0 1301400 0.205 -1 0 87 418.8007331257248 835.5869133182496 2 418.8005676269531 MULTI HCD FTMS 0 0 0 28693 2565367.25 0.7095206740006957 4 -0.033905029296875 2 NaN NaN 2 A 1 -1 5.4846 0 0 0.65637 0 0 201.2097443502816 560.3282344616091 761.5379788118908 0 0 0 0 0 0 0 0 0 A 0.65637 - 18 + NaN NaN 482860.7 NaN 22531 6162 28693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28696 112.48 NaN 707080 35 0 58942 0.261 + 28769 TTIKRIIKK 9 96 550.8795196224237 1099.7444863116473 2 550.8790283203125 MULTI HCD FTMS 0 0 0 28693 223736.21875 0.5225120980678414 5 -0.0460205078125 3 Unmodified _TTIKRIIKK_ ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-2|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-4|ACE 0 0.3510170533115441 2 W 1 9 6.0168 0 0 0.54711 0 0 605.4862293309817 305.15986047916255 910.6460898101443 0 0 0 0 0 0.3252574989159953 0 0 0 W 0.54711 - 17 + NaN NaN 198458.3 NaN 22532 6162 28693 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28698 112.49 NaN 5734100 35 0 1790300 0.326 -1 0 108 427.31391601997484 852.6132791067497 2 427.3137512207031 MULTI HCD FTMS 0 0 0 28697 4060857.5 0.7352229219446849 5 -0.04384613037109375 1 NaN NaN 2 K 1 -1 10.713 0 0 1.2565 0 0 706.5043751534279 0 706.5043751534279 0 6.109243748081781 0 0 0 0 0 0 0 K 1.2565 - 19 + NaN NaN 466709.5 NaN 22533 6163 28697 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28700 112.49 NaN 1478200 35 0 175990 0.327 + 12355 KNKLKRII 8 105 506.85293905056244 1011.6913251679249 2 506.85302734375 MULTI HCD FTMS 0 0 0 28699 566110.625 0.18444681655200726 44 -0.3967437744140625 1 Unmodified _KNKLKRII_ REV__tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1 2.302733041254933 0.5385759549224092 2 AC 2 -1 10.771 0 0 1.0647 0 0 157.18404417924995 677.4469970796591 834.6310412589091 0 0 0 0 0 0.1307196863200844 0 0 0 AC 1.0647 - 32 + NaN NaN 309074.8 NaN 22534 6164 28699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28701 112.5 NaN 2755000 35 0 586960 0.261 + 23346 RKKKKIKT 8 115 515.3664083938753 1028.7182638545505 2 515.366455078125 MULTI HCD FTMS 0 0 0 28699 608251.3125 0.14265729031710309 39 -0.35770416259765625 2 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 2 H 1 8 4.4082 0 0 0.42851 0 0 193.1296185961458 695.5135544422847 888.6431730384304 0 0 0 0 0 0.16439432979444843 0 0 0 H 0.42851 - 21 + NaN NaN 510415.8 NaN 22535 6164 28699 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28703 112.5 NaN 3036900 35 0 871610 0.326 + 31195 VVKKTKIS 8 109 451.80501214900283 901.5954713648057 2 451.80474853515625 MULTI HCD FTMS 0 0 0 28702 1502916.875 0.5767905987526933 12 -0.113616943359375 1 Unmodified _VVKKTKIS_ ENST00000540992.1_1_12:16666501-16667302:+|nuORF 0 0.5419923896992614 2 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.4968 0 0 736.5127820110932 0 736.5127820110932 0 11.27636252551653 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4968 - 15 + NaN NaN 526529.4 NaN 22536 6165 28702 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28705 112.51 NaN 4400900 35 0 1740700 0.327 -1 0 82 405.301091771643 808.587630610086 2 405.3011779785156 MULTI HCD FTMS 0 0 0 28704 2104930.25 0.617394304385478 -5 0.04270172119140625 1 NaN NaN 2 A 1 -1 4.6041 0 0 0.5694 0 0 174.2111329486474 560.3290023347319 734.5401352833792 0 0 0 0 0 0 0 0 0 A 0.5694 - 18 + NaN NaN 523765.2 NaN 22537 6166 28704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28706 112.51 NaN 344980 35 0 39169 0.261 + 7400 FVLKKIKKK 9 83 566.4002075195312 NaN 0 566.4002075195312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FVLKKIKKK_ ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant 0 0.29524684227089293 2 V 1 8 4.6041 0 0 0.40716 0 0 582.4568198224625 446.24265466861567 1028.6994744910783 0 0 0 0 0 0 0 0 0 + V 0.40716 + + 14 + NaN NaN 155783.7 NaN 22538 6166 28704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28707 112.52 NaN 371330 35 0 57188 0.261 -1 0 73 601.4430717014086 600.4357952348086 1 601.9134521484375 MULTI HCD FTMS 0 0 0 28704 43949.4375 0.37643679968415733 -1 0.00665283203125 3 NaN NaN 2 {I|L} 1 -1 3.0989 0 0 0.51612 0 0 266.22422843258886 218.1114443414672 484.3356727740561 0 0 0 0 0 0 0 0 0 {I|L} 0.51612 - 6 + NaN NaN 158719 NaN 22539 6166 28704 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28709 112.52 NaN 2249500 35 0 376590 0.327 + -1 SQCNCTERCDM 11 105 473.82963327994895 NaN 0 473.81793212890625 PEAK HCD FTMS 0 0 0 28708 57182.4921875 0.6121277475297187 -2 0.018768310546875 1 2 Carbamidomethyl (C),Oxidation (M) _SQC(Carbamidomethyl (C))NC(Carbamidomethyl (C))TERCDM(Oxidation (M))_ REV__ENSG00000164283|ENST00000381405|ESM1 0.09484139111097674 0.34185110575506755 2 V 1 -1 3.9794 0 0 0.42081 0 0 637.4627505913448 206.08587061099846 843.5486212023433 0 0 0 0 0 0 0 0 0 V 0.42081 - 16 + NaN NaN 405065 NaN 22540 6167 28708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28710 112.52 NaN 1122600 35 0 149900 0.261 + 12108 KKKKGKKKT 9 104 537.3795985913822 1072.7446442495643 2 537.3795166015625 MULTI HCD FTMS 0 0 0 28708 468297.96875 0.12549086656736508 58 -0.5074081420898438 2 Unmodified _KKKKGKKKT_ ENST00000497571.5_1_10:3819016-3819262:-|nuORF 1.844237919475145 0.33703635659052655 2 A 1 9 4.6041 0 0 0.42919 0 0 262.262531729533 736.4345006271974 998.6970323567305 0 0 0 0 0 0 0 0 0 A 0.42919 - 37 + NaN NaN 268059.3 NaN 22541 6167 28708 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28712 112.53 NaN 3685900 35 0 1037300 0.326 -1 0 104 429.7917497337814 857.5689465343628 2 429.79156494140625 MULTI HCD FTMS 0 0 0 28711 1980858.625 0.8557980513759578 10 -0.09795379638671875 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.979 0 0 1.6301 0 0 692.4864555449082 0 692.4864555449082 0 11.989700043360187 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6301 - 121 + NaN NaN 534726.2 NaN 22542 6168 28711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28713 112.53 NaN 3061800 35 0 488370 0.218 -1 0 133 462.82679164735663 923.6390303615133 2 462.826904296875 MULTI HCD FTMS 0 0 0 28711 1157372 0.2515959632805351 29 -0.2584075927734375 2 NaN NaN 2 K 1 -1 10.379 0 0 1.1237 0 0 777.5299433027227 0 777.5299433027227 0 2.3940535046503086 0 0 0 0 0 0 0 K 1.1237 - 17 + NaN NaN 430779.8 NaN 22543 6168 28711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28714 112.54 NaN 473150 35 0 46587 0.261 + 28284 TLQPKLKRF 9 81 565.8552288760537 NaN 0 565.8545532226562 PEAK HCD FTMS 0 0 0 28711 130157.390625 1 0 0 3 Unmodified _TLQPKLKRF_ ENSG00000198576|ENST00000356613|ARC 4.3292370932331545 0.2742679634796037 2 {M(Oxidation (M))|F} 1 8 6.9897 0 0 0.61872 0 0 582.3682591118145 397.2704256647094 979.6386847765239 0 0 0 0 0 0 0 0 0 + {M(Oxidation (M))|F} 0.61872 + + 14 + NaN NaN 171695.1 NaN 22544 6168 28711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28716 112.54 NaN 1140600 35 0 328440 0.425 + 30741 VPKPRVKK 8 105 476.3269324025613 950.6393118719226 2 476.32672119140625 MULTI HCD FTMS 0 0 0 28715 714055.25 0.23226445197637202 33 -0.2968597412109375 1 Unmodified _VPKPRVKK_ CHD2|p.K471Nfs*7|1|0.1|ENSG00000173575|chr15:92948985-92949021|AAGAAACAACCTGCATATTTAGGAGGGGAGAATCTGG/-|frameshift_variant;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2 0.6903765706972694 0.5409681170271811 2 W 1 8 3.9794 0 0 0.4186 0 0 130.1965231647992 631.3546145273567 761.5511376921559 0 0 0 0 0 0 0 0 0 W 0.4186 - 53 + NaN NaN 420911 NaN 22545 6169 28715 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28718 112.55 NaN 2109300 35 0 866440 0.327 -1 0 82 432.3005029506775 862.5864529681551 2 432.3004150390625 MULTI HCD FTMS 0 0 0 28717 1482015.625 0.3829499470703895 19 -0.17646026611328125 1 NaN NaN 2 P 1 -1 7.8567 0 0 0.91083 0 0 642.4555763585832 120.0503405206664 762.5059168792496 0 0 0 0 0 0.3252574989159953 0 0 0 P 0.91083 - 10 + NaN NaN 402523.4 NaN 22546 6170 28717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28719 112.55 NaN 2592100 35 0 508030 0.261 -1 0 114 471.3402653194518 940.6659777057037 2 471.3402404785156 MULTI HCD FTMS 0 0 0 28717 1678257.125 0.27333262513353057 31 -0.2822418212890625 2 NaN NaN 2 P 1 -1 3.0989 0 0 0.32944 0 0 720.5351010961318 120.05069147281483 840.5857925689467 0 0 0 0 0 0 0 0 0 P 0.32944 - 19 + NaN NaN 488291 NaN 22547 6170 28717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28720 112.56 NaN 2056600 35 0 375690 0.261 + 23013 RAVKKKKK 8 92 493.3534371315358 984.6923213298717 2 493.35302734375 MULTI HCD FTMS 0 0 0 28717 1145930.5 0.18720975928445593 41 -0.35984039306640625 3 Unmodified _RAVKKKKK_ ENSG00000125386|ENST00000637812|FAM193A;ENST00000513898.5_1_4:2696860-2717089:+|nuORF;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312|FAM193A 0.6903765706972694 0.5409681170271811 2 K 1 7 5.4846 0 0 0.55698 0 0 636.4651617613155 217.10793481998283 853.5730965812983 0 0 0 0 0 0 0 0 0 + K 0.55698 + + 22 + NaN NaN 414626 NaN 22548 6170 28717 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28723 112.57 NaN 2998400 35 0 683760 0.327 + 30279 VKKKGIAA 8 121 407.77855549071154 813.5425580482231 2 407.7787170410156 MULTI HCD FTMS 0 0 0 28722 1401758.875 0.7428674182824516 4 -0.0375213623046875 1 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 0 0.5419923896992614 2 {M(Oxidation (M))|F} 1 8 13.495 0 0 1.6588 0 0 648.4597771417763 0 648.4597771417763 0 3.8907562519182193 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.6588 - 32 + NaN NaN 448814.8 NaN 22549 6172 28722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28724 112.57 NaN 1224700 35 0 157170 0.261 -1 0 101 495.8311354267737 989.6477179203474 2 495.8312072753906 MULTI HCD FTMS 0 0 0 28722 312948.625 0.1425584352076012 38 -0.3335113525390625 2 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 12.218 0 0 1.2346 0 0 824.5651964133147 0 824.5651964133147 0 9.119543704721593 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.2346 - 47 + NaN NaN 283508.1 NaN 22550 6172 28722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28725 112.58 NaN 388130 35 0 42485 0.261 -1 0 90 581.4057943306551 1160.7970357281101 2 581.4074096679688 MULTI HCD FTMS 0 0 0 28722 185622.765625 0.10220407108836395 83 -0.6742019653320312 3 NaN NaN 2 N 1 -1 3.9794 0 0 0.34282 0 0 218.23960043944447 825.4904025970739 1043.7300030365184 0 0 0 0 0 0 0 0 0 N 0.34282 - 30 + NaN NaN 167127.4 NaN 22551 6172 28722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28726 112.58 NaN 246420 35 0 26916 0.261 + 16195 LPVLVVLRVVV 11 70 603.4192732872663 NaN 0 603.4181518554688 PEAK HCD FTMS 0 0 0 28722 47036.1015625 0.3305130449705001 4 -0.0375213623046875 4 Unmodified _LPVLVVLRVVV_ REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF;REV__nc|ENSG00000226800|Q8N1I8|CACTIN-AS1 0.35063188157827746 0.3411255017974031 2 Q 1 -1 5.4846 0 0 0.45522 0 0 878.6484698149637 195.09473596744377 1073.7432057824076 0 0 0 0 0 0 0 0 0 Q 0.45522 - 15 + NaN NaN 146976.2 NaN 22552 6172 28722 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28728 112.58 NaN 399550 35 0 30606 0.411 -1 0 96 581.4057943306551 1160.7970357281101 2 581.4057006835938 MULTI HCD FTMS 0 0 0 28727 179503.84375 0.09883498689122376 84 -0.6720428466796875 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.34282 0 0 350.3139469603306 736.4313226657266 1086.7452696260573 0 0 0 0 0 0 0 0 0 A 0.34282 - 25 + NaN NaN 215217.2 NaN 22553 6173 28727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28731 112.6 NaN 2503400 35 0 602390 0.327 -1 0 90 449.32717602193026 896.6397991106605 2 449.32733154296875 MULTI HCD FTMS 0 0 0 28730 1650834 0.25274185893412127 21 -0.18372344970703125 1 NaN NaN 2 A 1 -1 3.4949 0 0 0.38977 0 0 262.26358697018117 560.3283430932619 822.591930063443 0 0 0 0 0 0 0 0 0 A 0.38977 - 19 + NaN NaN 477568.3 NaN 22554 6175 28730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28732 112.6 NaN 3325800 35 0 895110 0.204 -1 0 95 418.8007331257248 835.5869133182496 2 418.8007507324219 MULTI HCD FTMS 0 0 0 28730 1748085.75 0.483479696542868 17 -0.15808868408203125 2 NaN NaN 2 Q 1 -1 10.596 0 0 1.2681 0 0 689.5142489889512 0 689.5142489889512 0 5.991838268834169 0 0 0 0 0 0 0 Q 1.2681 - 18 + NaN NaN 421761.4 NaN 22555 6175 28730 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28734 112.61 NaN 3789700 35 0 1069300 0.327 -1 0 108 427.31391601997484 852.6132791067497 2 427.31402587890625 MULTI HCD FTMS 0 0 0 28733 2013110.875 0.36447603978128296 18 -0.1633758544921875 1 NaN NaN 2 K 1 -1 11.109 0 0 1.303 0 0 706.5040852364357 0 706.5040852364357 0 6.505149978319906 0 0 0 0 0 0 0 K 1.303 - 18 + NaN NaN 430974.6 NaN 22556 6176 28733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28735 112.61 NaN 599180 35 0 46398 0.261 + 22153 QKKVIKKKT 9 94 550.8795196224237 1099.7444863116473 2 550.8798828125 MULTI HCD FTMS 0 0 0 28733 96395.78125 0.22512207539409035 19 -0.1696014404296875 2 Unmodified _QKKVIKKKT_ ENSG00000186472|ENST00000333891|PCLO;PCLO|p.V5071L|1|0.17|ENSG00000186472|chr7:82760716-82760716|C/A|missense_variant 0.5247636613948944 0.34703895399870666 2 W 1 9 7.6587 0 0 0.69641 0 0 605.4867176122317 305.16001306705317 910.6467306792849 0 0 0 0 0 0.3054621874040891 0 0 0 W 0.69641 - 20 + NaN NaN 191080.4 NaN 22557 6176 28733 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28737 112.62 NaN 2154500 35 0 425800 0.327 + 23347 RKKKKIKT 8 108 515.3664083938753 1028.7182638545505 2 515.3663330078125 MULTI HCD FTMS 0 0 0 28736 332551.65625 0.07799558701501316 52 -0.4423980712890625 1 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 2 W 1 8 3.9794 0 0 0.38683 0 0 218.236635644503 621.3671820715915 839.6038177160945 0 0 0 0 0 0 0 0 0 W 0.38683 - 22 + NaN NaN 429078.8 NaN 22558 6177 28736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28738 112.62 NaN 1444900 35 0 313200 0.261 + 16333 LRKVLAKGK 9 105 506.85293905056244 1011.6913251679249 2 506.8529357910156 MULTI HCD FTMS 0 0 0 28736 333419.1875 0.10863266823817662 57 -0.47491455078125 2 Unmodified _LRKVLAKGK_ OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant 0.5247636613948944 0.34703895399870666 2 P 1 9 3.5058 0 0 0.34652 0 0 606.4506768298374 305.1591890924438 911.6098659222812 0 0 0 0 0 0.23965182871044374 0 0 0 P 0.34652 - 28 + NaN NaN 303336.7 NaN 22559 6177 28736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28739 112.62 NaN 404520 35 0 59362 0.261 -1 0 80 547.3628408108766 546.3555643442766 1 549.3754272460938 MULTI HCD FTMS 0 0 0 28736 54328.046875 0.30402162517585973 3 -0.02791595458984375 3 NaN NaN 2 YA 2 -1 12.474 0 0 2.2832 0 0 0 309.24225794010005 309.24225794010005 9.3753063169585 0 0 0 0 0 0 0 0 YA 2.2832 - 7 + NaN NaN 165747.5 NaN 22560 6177 28736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28742 112.63 NaN 3989700 35 0 1391900 0.327 -1 0 91 405.301091771643 808.587630610086 2 405.3009948730469 MULTI HCD FTMS 0 0 0 28741 1965075 0.5763735461972164 8 -0.07474517822265625 1 NaN NaN 2 KK 2 -1 7.9588 0 0 0.98428 0 0 222.21243126176074 327.14850794010005 549.3609392018608 0 0 0 0 0 0 0 0 0 KK 0.98428 - 17 + NaN NaN 635367.9 NaN 22561 6179 28741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28743 112.64 NaN 2111000 35 0 406120 0.245 + 30477 VLTSVKKK 8 112 451.80501214900283 901.5954713648057 2 451.8047790527344 MULTI HCD FTMS 0 0 0 28741 562034.75 0.21569813032561783 26 -0.2324981689453125 2 Unmodified _VLTSVKKK_ ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16553955-16554369:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 12.474 0 0 1.3836 0 0 736.5130414105073 0 736.5130414105073 0 6.9897000433601875 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.3836 - 27 + NaN NaN 378741 NaN 22562 6179 28741 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28746 112.65 NaN 1272800 35 0 237400 0.327 + 12502 KRLKLNIK 8 95 506.85293905056244 1011.6913251679249 2 506.85296630859375 MULTI HCD FTMS 0 0 0 28745 243898.984375 0.07946572496892548 61 -0.49602508544921875 1 Unmodified _KRLKLNIK_ tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1 0.7936320650641473 0.540814922690045 2 AC 2 8 6.4537 0 0 0.63791 0 0 157.18375507030493 677.448106088026 834.6318611583308 0 0 0 0 0 0 0 0 0 AC 0.63791 - 20 + NaN NaN 285658.6 NaN 22563 6181 28745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28747 112.65 NaN 1047300 35 0 161590 0.261 -1 0 90 478.3508948878222 954.6872368424445 2 478.8522033691406 MULTI HCD FTMS 0 0 0 28745 52953.69921875 0.26594814232253944 1 -0.0088043212890625 2 NaN NaN 2 K 1 -1 13.099 0 0 1.3721 0 0 808.5783176303336 0 808.5783176303336 0 10 0 0 0 0 0 0 0 K 1.3721 - 21 + NaN NaN 241914.4 NaN 22564 6181 28745 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28749 112.66 NaN 2244400 35 0 289240 0.326 -1 0 134 462.82679164735663 923.6390303615133 2 462.8271179199219 MULTI HCD FTMS 0 0 0 28748 856229.75 0.18613198586167778 43 -0.3690948486328125 1 NaN NaN 2 H 1 -1 5.4846 0 0 0.5938 0 0 200.20613669024345 583.3511349864768 783.5572716767203 0 0 0 0 0 0 0 0 0 H 0.5938 - 16 + NaN NaN 401486.9 NaN 22565 6182 28748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28750 112.66 NaN 953550 35 0 222260 0.261 -1 0 102 506.3911783439969 NaN 0 506.391357421875 PEAK HCD FTMS 0 0 0 28748 182779.265625 0.48827289182822325 9 -0.08843231201171875 2 NaN NaN 2 T 1 -1 6.9897 0 0 0.69152 0 0 156.2613744815 750.4497237349096 906.7110982164097 0 0 0 0 0 0 0 0 0 T 0.69152 - 16 + NaN NaN 237088.9 NaN 22566 6182 28748 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28752 112.67 NaN 885880 35 0 88820 0.411 + 28171 TKKKKKKKG 9 120 537.3795985913822 1072.7446442495643 2 537.3799438476562 MULTI HCD FTMS 0 0 0 28751 308416.71875 0.08264712615156056 74 -0.5881576538085938 1 Unmodified _TKKKKKKKG_ REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF 0.45834013312273997 0.3475424938045562 2 A 1 -1 1.9897 0 0 0.18548 0 0 350.3150709859396 648.3804545818184 998.6955255677581 0 0 0 0 0 0 0 0 0 A 0.18548 - 21 + NaN NaN 367776.8 NaN 22567 6183 28751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28754 112.67 NaN 1877400 35 0 334190 0.327 -1 0 111 471.3402653194518 940.6659777057037 2 471.3404541015625 MULTI HCD FTMS 0 0 0 28753 879856 0.1432994662361333 45 -0.38251495361328125 1 NaN NaN 2 {I|L} 1 -1 5.4846 0 0 0.58305 0 0 607.4481565160537 217.1079043024047 824.5560608184584 0 0 0 0 0 0 0 0 0 {I|L} 0.58305 - 79 + NaN NaN 382270.3 NaN 22568 6184 28753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28755 112.68 NaN 1375000 35 0 236360 0.261 + 23354 RKKLKKKG 8 96 493.3534371315358 984.6923213298717 2 493.3536071777344 MULTI HCD FTMS 0 0 0 28753 894501.9375 0.14613407392407693 55 -0.45074462890625 2 Unmodified _RKKLKKKG_ ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000442210.2_1_12:123465790-123467130:+|nuORF;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4 0.7936320650641473 0.540814922690045 2 K 1 7 6.9897 0 0 0.70984 0 0 636.4652227964717 217.10775171451408 853.5729745109858 0 0 0 0 0 0 0 0 0 + K 0.70984 + + 28 + NaN NaN 296744.8 NaN 22569 6184 28753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28756 112.68 NaN 3133200 35 0 1392400 0.225 + 30323 VKVRVVRI 8 100 484.8398651415648 967.6651773499296 2 484.840087890625 MULTI HCD FTMS 0 0 0 28753 598644.875 0.12312932680189378 53 -0.4351043701171875 3 Unmodified _VKVRVVRI_ ENST00000492143.5_1_7:148514900-148516105:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 8 5.5065 0 0 0.56905 0 0 140.1575187432515 677.449562262443 817.6070810056945 0 0 0 0 0 0.2742275032520141 0 0 0 {M(Oxidation (M))|F} 0.56905 - 11 + NaN NaN 446275.7 NaN 22570 6184 28753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28757 112.69 NaN 1808300 35 0 275980 0.259 -1 0 98 473.81800332059424 945.6214537079885 2 473.81787109375 MULTI HCD FTMS 0 0 0 28753 409320.75 0.15531800109073776 45 -0.38251495361328125 4 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 13.495 0 0 1.4271 0 0 780.5390542712682 0 780.5390542712682 0 9.515449934959719 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4271 - 31 + NaN NaN 366504.2 NaN 22571 6184 28753 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28760 112.7 NaN 2680000 35 0 503560 0.327 + 30280 VKKKGIAA 8 143 407.77855549071154 813.5425580482231 2 407.7785949707031 MULTI HCD FTMS 0 0 0 28759 913879.0625 0.4843136661301768 18 -0.1607208251953125 1 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 12.474 0 0 1.5333 0 0 648.4598534357216 0 648.4598534357216 0 10.255762612236905 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.5333 - 20 + NaN NaN 494247.2 NaN 22572 6186 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28761 112.7 NaN 974570 35 0 218050 0.261 + 12522 KRVVPKKP 8 82 476.3269324025613 950.6393118719226 2 476.3269348144531 MULTI HCD FTMS 0 0 0 28759 311839.03125 0.10143349789546957 50 -0.406219482421875 2 Unmodified _KRVVPKKP_ ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-4|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-8|OS9;TSFM-OS9|1|fusion;TSFM-OS9|2|fusion;TSFM-OS9|3|fusion;TSFM-OS9|4|fusion;TSFM-OS9|5|fusion;TSFM-OS9|6|fusion;TSFM-OS9|7|fusion;TSFM-OS9|8|fusion 0.7936320650641473 0.540814922690045 2 KP 2 6 5.5732 0 0 0.58626 0 0 364.2645792551818 358.1915682428344 722.4561474980162 0 0 0 0 0 0 0 0 0 + KP 0.58626 + + 26 + NaN NaN 237134.7 NaN 22573 6186 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28762 112.7 NaN 737480 35 0 75761 0.261 + 12174 KKKQKKKK 8 87 522.3743414665349 1042.7341299998698 2 522.3734130859375 MULTI HCD FTMS 0 0 0 28759 173287.03125 0.8646107599986872 -4 0.03853607177734375 3 Unmodified _KKKQKKKK_ ENSG00000136448|ENST00000258960|NMT1;ENST00000590114.5_1_17:43138721-43173651:+|nuORF;REV__ENSG00000136448|ENST00000258960|NMT1;REV__ENST00000590114.5_1_17:43138721-43173651:+|nuORF;ZCRB1|p.E135Q|1|0.14|ENSG00000139168|chr12:42313917-42313917|C/G|missense_variant 0.6903765706972694 0.5409681170271811 2 C 1 8 5.4846 0 0 0.52598 0 0 112.19325993879825 824.4855849023786 936.6788448411769 0 0 0 0 0 0 0 0 0 C 0.52598 - 17 + NaN NaN 207664.8 NaN 22574 6186 28759 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28764 112.71 NaN 3717800 35 0 2034600 0.327 -1 0 80 431.30241841923413 860.5902839052683 2 431.3026123046875 MULTI HCD FTMS 0 0 0 28763 1387205.125 0.718517237525864 -2 0.01909637451171875 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 7.4913 0 0 0.87049 0 0 270.2382502490655 427.30649744205317 697.5447476911187 0 0 0 0 0 0.28872548999643577 0 0 0 C(Carbamidomethyl (C)) 0.87049 - 18 + NaN NaN 576205.1 NaN 22575 6187 28763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28765 112.71 NaN 648820 35 0 123020 0.261 -1 0 74 478.3508948878222 954.6872368424445 2 478.349365234375 MULTI HCD FTMS 0 0 0 28763 137317.078125 0.4018807556935477 3 -0.02841949462890625 2 NaN NaN 2 C 1 -1 5.4846 0 0 0.57449 0 0 112.20237392429972 736.4325323583055 848.6349062826052 0 0 0 0 0 0 0 0 0 C 0.57449 - 20 + NaN NaN 191648.4 NaN 22576 6187 28763 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28767 112.72 NaN 2158900 35 0 411240 0.326 -1 0 110 449.32717602193026 896.6397991106605 2 449.32708740234375 MULTI HCD FTMS 0 0 0 28766 1128619.625 0.17279109956060443 34 -0.2879180908203125 1 NaN NaN 2 D 1 -1 5.8412 0 0 0.65146 0 0 333.28843966919914 445.3147371881469 778.603176857346 0 0 0 0 0 0 0 0.2742275032520141 0 D 0.65146 - 30 + NaN NaN 527416.9 NaN 22577 6188 28766 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28769 112.73 NaN 2535600 35 0 545060 0.326 -1 0 129 427.31391601997484 852.6132791067497 2 427.3138732910156 MULTI HCD FTMS 0 0 0 28768 1415895.25 0.2563494638441758 31 -0.26779937744140625 1 NaN NaN 2 K 1 -1 11.259 0 0 1.3205 0 0 706.5041462715919 0 706.5041462715919 0 4.269359821608809 0 0 0 0 0 0 0 K 1.3205 - 16 + NaN NaN 477691 NaN 22578 6189 28768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28770 112.73 NaN 413420 35 0 66331 0.261 + 28784 TTKKKKKKK 9 84 559.39257685351 1116.77060077382 2 559.3933715820312 MULTI HCD FTMS 0 0 0 28768 99598.8125 0.03515362112644875 80 -0.6124496459960938 2 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 H 1 9 3.0989 0 0 0.27749 0 0 438.3693689396387 538.3299044244749 976.6992733641137 0 0 0 0 0 0 0 0 0 H 0.27749 - 13 + NaN NaN 149977.5 NaN 22579 6189 28768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28771 112.73 NaN 296060 35 0 31346 0.261 + 12507 KRLLVPILLP 10 80 581.4055393406505 NaN 0 581.4058837890625 PEAK HCD FTMS 0 0 0 28768 94400.484375 0.9020320924757314 -8 0.075714111328125 3 Unmodified _KRLLVPILLP_ ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF;ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1 0.45834013312273997 0.33979201340002624 2 A 1 10 4.6041 0 0 0.39663 0 0 394.3410946951697 692.4071749322874 1086.7482696274571 0 0 0 0 0 0 0 0 0 A 0.39663 - 6 + NaN NaN 151670.4 NaN 22580 6189 28768 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28773 112.74 NaN 1271700 35 0 228930 0.327 + 23348 RKKKKIKT 8 97 515.3664083938753 1028.7182638545505 2 515.3663330078125 MULTI HCD FTMS 0 0 0 28772 356024.53125 0.08350083899661423 65 -0.5049819946289062 1 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0 0.5419923896992614 2 W 1 8 2.7642 0 0 0.2687 0 0 59.13941975764153 780.4583759746714 839.597795732313 0 0 0 0 0 0 0 0 0 W 0.2687 - 28 + NaN NaN 280871.2 NaN 22581 6190 28772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28774 112.74 NaN 432130 35 0 66711 0.261 + 28785 TTKKKKKKK 9 90 559.39257685351 1116.77060077382 2 559.391845703125 MULTI HCD FTMS 0 0 0 28772 33794.15234375 0.011927720802712155 81 -0.6131210327148438 2 Unmodified _TTKKKKKKK_ chrX:154776324-154776804|216|12.36|0.53|4.55|+|1|DKC1,DKC1|1;ENSG00000130826|ENST00000369550|DKC1 0 0.3510170533115441 2 A 1 9 6.7217 0 0 0.60189 0 0 394.3422693302637 648.3809247432088 1042.7231940734725 0 0 0 0 0 0.2742275032520141 0 0 0 A 0.60189 - 24 + NaN NaN 155682.5 NaN 22582 6190 28772 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28776 112.75 NaN 4192900 35 0 2053300 0.327 -1 0 88 440.81363059754557 879.6127082618912 2 440.8137512207031 MULTI HCD FTMS 0 0 0 28775 683738.1875 0.15676809957669016 44 -0.34932708740234375 1 NaN NaN 2 A 1 -1 6.2591 0 0 0.71157 0 0 157.18384243195652 648.3802053456412 805.5640477775978 0 0 0 0 0 0.3494850021680094 0 0 0 A 0.71157 - 18 + NaN NaN 474171.8 NaN 22583 6191 28775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28777 112.75 NaN 990140 35 0 86320 0.261 + 12503 KRLKLNIK 8 100 506.85293905056244 1011.6913251679249 2 506.8526916503906 MULTI HCD FTMS 0 0 0 28775 389290.125 0.1268362067420709 71 -0.5420989990234375 2 Unmodified _KRLKLNIK_ tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 8 3.4949 0 0 0.34545 0 0 184.1845823272784 677.4484144057666 861.632996733045 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.34545 - 59 + NaN NaN 241669.2 NaN 22584 6191 28775 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28779 112.76 NaN 2107900 35 0 930920 0.327 -1 0 65 405.301091771643 808.587630610086 2 405.3009338378906 MULTI HCD FTMS 0 0 0 28778 1574667.5 0.46186363933005364 21 -0.171173095703125 1 NaN NaN 2 A 1 -1 3.9794 0 0 0.49214 0 0 174.2112957390711 560.3281344049436 734.5394301440147 0 0 0 0 0 0 0 0 0 A 0.49214 - 10 + NaN NaN 337137 NaN 22585 6192 28778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28784 112.78 NaN 1569500 35 0 201040 0.327 + 12214 KKTKTALL 8 105 451.80501214900283 901.5954713648057 2 451.8048400878906 MULTI HCD FTMS 0 0 0 28783 443473.125 0.1701964583367114 43 -0.3439483642578125 1 Unmodified _KKTKTALL_ ENSG00000155324|ENST00000285689|GRAMD2B;ENST00000504859.5_1_5:125807941-125819298:+|nuORF;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B 0.6014990680409731 0.5410999795511968 2 {M(Oxidation (M))|F} 1 8 10 0 0 1.1091 0 0 736.5125836468354 0 736.5125836468354 0 6.020599913279625 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.1091 - 43 + NaN NaN 364653.4 NaN 22586 6196 28783 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28786 112.79 NaN 1709000 35 0 189790 0.327 -1 0 129 462.82679164735663 923.6390303615133 2 462.8270568847656 MULTI HCD FTMS 0 0 0 28785 501582.125 0.109036712399879 58 -0.45461273193359375 1 NaN NaN 2 T 1 -1 4.6041 0 0 0.49847 0 0 360.2880438577054 459.27768884830317 819.5657327060086 0 0 0 0 0 0 0 0 0 T 0.49847 - 18 + NaN NaN 372545.7 NaN 22587 6197 28785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28787 112.79 NaN 661890 35 0 78550 0.261 + 28172 TKKKKKKKG 9 89 537.3795985913822 1072.7446442495643 2 537.3800048828125 MULTI HCD FTMS 0 0 0 28785 169222.90625 0.04534704518374121 88 -0.6573867797851562 2 Unmodified _TKKKKKKKG_ REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF 0.45834013312273997 0.3475424938045562 2 A 1 -1 4.6041 0 0 0.42919 0 0 262.2637515447804 736.4338104654671 998.6975620102476 0 0 0 0 0 0 0 0 0 A 0.42919 - 21 + NaN NaN 207376.9 NaN 22588 6197 28785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28788 112.8 NaN 1241000 35 0 243900 0.261 -1 0 83 515.4230428586778 514.4157663920778 1 515.4232177734375 MULTI HCD FTMS 0 0 0 28785 199793.453125 0.3109679271715087 40 -0.32208251953125 3 NaN NaN 2 P 1 -1 0.088644 0 0 0.017232 0 0 109.17542322977154 305.15903650455317 414.3344597343247 0 0 0 0 0 0 0 0 0 P 0.017232 - 5 + NaN NaN 289668.2 NaN 22589 6197 28785 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28790 112.8 NaN 924350 35 0 161340 0.327 + 23355 RKKLKKKG 8 89 493.3534371315358 984.6923213298717 2 493.35333251953125 MULTI HCD FTMS 0 0 0 28789 435486.59375 0.07114510032462279 69 -0.5245513916015625 1 Unmodified _RKKLKKKG_ ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000442210.2_1_12:123465790-123467130:+|nuORF;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4 0.7936320650641473 0.540814922690045 2 K 1 7 6.9897 0 0 0.70984 0 0 636.4651617613155 217.10772119693596 853.5728829582514 0 0 0 0 0 0 0 0 0 + K 0.70984 + + 34 + NaN NaN 242373.9 NaN 22590 6198 28789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28791 112.8 NaN 368370 35 0 27234 0.261 + 23420 RLKTLTKIK 9 79 550.879240933101 1099.7439289330018 2 550.8795166015625 MULTI HCD FTMS 0 0 0 28789 73471.5 0.46948239057635743 6 -0.05767822265625 2 Unmodified _RLKTLTKIK_ ENSG00000198028|ENST00000301480|ZNF560 0 0.3510170533115441 2 W 1 9 6.2591 0 0 0.56914 0 0 605.4865264445237 305.1586092584594 910.6451357029832 0 0 0 0 0 0.3494850021680094 0 0 0 W 0.56914 - 12 + NaN NaN 152967.3 NaN 22591 6198 28789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28793 112.81 NaN 1249500 35 0 217520 0.327 -1 0 103 471.3402653194518 940.6659777057037 2 471.34014892578125 MULTI HCD FTMS 0 0 0 28792 616533.25 0.10041289215715814 60 -0.46051025390625 1 NaN NaN 2 {I|L} 1 -1 3.9794 0 0 0.42304 0 0 217.23446165188267 607.3214330049508 824.5558946568335 0 0 0 0 0 0 0 0 0 {I|L} 0.42304 - 61 + NaN NaN 292534.3 NaN 22592 6199 28792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28794 112.81 NaN 265190 35 0 69434 0.261 + 15073 LLYKLLKLLK 10 54 622.9373168945312 NaN 0 622.9373168945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLYKLLKLLK_ REV__ENST00000509297.5_1_5:135469533-135483594:+|nuORF;REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF 0 0.34018428902965525 2 {I|L} 1 -1 5.4846 0 0 0.44093 0 0 853.6716143048844 274.08201013736567 1127.7536244422502 0 0 0 0 0 0 0 0 0 {I|L} 0.44093 + + 8 + NaN NaN 124565.2 NaN 22593 6199 28792 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28796 112.82 NaN 1936800 35 0 388680 0.327 + 30281 VKKKGIAA 8 109 407.77855549071154 813.5425580482231 2 407.7786560058594 MULTI HCD FTMS 0 0 0 28795 437904.3125 0.2320690468834213 32 -0.2583465576171875 1 Unmodified _VKKKGIAA_ ENSG00000203933|ENST00000370540|CXorf66 2.577480529830294 0.5381683276125971 2 {M(Oxidation (M))|F} 1 8 11.99 0 0 1.4738 0 0 648.4601128351356 0 648.4601128351356 0 11.27636252551653 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 1.4738 - 21 + NaN NaN 385530.9 NaN 22594 6200 28795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28797 112.82 NaN 371060 35 0 81174 0.261 + 16623 LVVLLKPPLLL 11 54 609.4342001754733 NaN 0 609.4364624023438 PEAK HCD FTMS 0 0 0 28795 179395.078125 0.25705063823365976 18 -0.16156768798828125 2 Unmodified _LVVLLKPPLLL_ CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant 0 0.34212014346876374 2 S 1 11 3.4949 0 0 0.2872 0 0 521.4266146070028 605.3598726861936 1126.7864872931964 0 0 0 0 0 0 0 0 0 S 0.2872 - 4 + NaN NaN 157561.9 NaN 22595 6200 28795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28798 112.83 NaN 279970 35 0 36743 0.263 -1 0 65 478.3508948878222 954.6872368424445 2 478.3475646972656 MULTI HCD FTMS 0 0 0 28795 133458.890625 0.39058914266711886 16 -0.1375579833984375 3 NaN NaN 2 D 1 -1 13.495 0 0 1.4135 0 0 821.649698245568 0 821.649698245568 0 8.010299956639813 0 0 0 0 0 0 0 D 1.4135 - 13 + NaN NaN 142044.7 NaN 22596 6200 28795 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28801 112.84 NaN 1147800 35 0 254750 0.327 -1 0 62 432.3005029506775 862.5864529681551 2 432.30029296875 MULTI HCD FTMS 0 0 0 28800 462333.09375 0.11946596971975375 51 -0.39067840576171875 1 NaN NaN 2 WD 2 -1 6.766 0 0 0.78438 0 0 130.19612282358258 428.2761324518188 558.4722552754014 0 0 0 0 0 0 0 0.3807196863200844 0 WD 0.78438 - 17 + NaN NaN 261603.4 NaN 22597 6202 28800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28802 112.84 NaN 1168900 35 0 227640 0.261 -1 0 85 449.3387918734232 NaN 0 449.3269348144531 PEAK HCD FTMS 0 0 0 28800 34099.8828125 1 0 0 2 NaN NaN 2 MP 2 -1 4.6927 0 0 0.52336 0 0 448.4388619677464 217.1079500787719 665.5468120465183 0 0 0 0 0 0 0 0 0 MP 0.52336 - 21 + NaN NaN 292178.8 NaN 22598 6202 28800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28803 112.85 NaN 388750 35 0 39763 0.261 + 12504 KRLKLNIK 8 80 506.85293905056244 1011.6913251679249 2 506.8533630371094 MULTI HCD FTMS 0 0 0 28800 189534.390625 0.06175297447898255 82 -0.6007614135742188 3 Unmodified _KRLKLNIK_ tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1 0.7936320650641473 0.540814922690045 2 {M(Oxidation (M))|F} 1 8 3.9794 0 0 0.39334 0 0 184.1802910876499 677.4492389818402 861.6295300694901 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.39334 - 4 + NaN NaN 161577.7 NaN 22599 6202 28800 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28805 112.85 NaN 893610 35 0 191180 0.411 -1 0 86 432.3005029506775 862.5864529681551 2 432.3006286621094 MULTI HCD FTMS 0 0 0 28804 308681.21875 0.07976262489265984 52 -0.39227294921875 1 NaN NaN 2 P 1 -1 6.4659 0 0 0.7496 0 0 545.3981117589739 217.10793481998283 762.5060465789567 0 0 0 0 0 0.4247425010840047 0 0 0 P 0.7496 - 34 + NaN NaN 377373 NaN 22600 6203 28804 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28807 112.86 NaN 975120 35 0 167910 0.327 + 23349 RKKKKIKT 8 94 515.3664281803933 1028.7183034275865 2 515.3663330078125 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RKKKKIKT_ ENSG00000111845|ENST00000379568|PAK1IP1 0.7936320650641473 0.540814922690045 2 RRA 3 7 2.9318 0 0 0.285 0 0 0 642.4680647403396 642.4680647403396 0.7133375178436547 0 0 0 0 0 0 0 0 RRA 0.285 - 26 NaN NaN 241512.9 NaN 22601 6204 28806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28808 112.86 NaN 438320 35 0 53581 0.261 + 14982 LLKKKKKNA 9 80 535.8741624832686 1069.7337720333371 2 535.8755493164062 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLKKKKKNA_ REV__ENST00000389266.7_1_7:30673494-30673641:+|nuORF 0.5247636613948944 0.34703895399870666 2 G 1 -1 4.6041 0 0 0.4304 0 0 215.22719351946836 794.4734591119749 1009.7006526314433 0 0 0 0 0 0 0 0 0 G 0.4304 - 13 + NaN NaN 169262.8 NaN 22602 6204 28806 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28810 112.87 NaN 823680 35 0 108150 0.327 + -1 HCRRLCIERRM 11 77 515.9252185848192 NaN 0 515.9255981445312 PEAK HCD FTMS 0 0 0 28809 75958.6796875 0.25888773114198577 12 -0.10579681396484375 1 Carbamidomethyl (C),Oxidation (M) _HCRRLC(Carbamidomethyl (C))IERRM(Oxidation (M))_ REV__GNAT1|p.D311Efs*105|1|0.07|ENSG00000114349|chr3:50194834-50194886|ACGTGAAGGAGATCTATTCCCACATGACGTGCGCCACCGACACGCAGAACGTC/-|frameshift_variant 0.09484139111097674 0.34185110575506755 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.38641 0 0 528.5217251078948 351.25263391666255 879.7743590245573 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.38641 + + 14 + NaN NaN 227347.9 NaN 22603 6205 28809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28811 112.87 NaN 291280 35 0 38709 0.261 + 14902 LKVPIRKGV 9 77 505.348292981438 1008.6820330296761 2 505.8499450683594 MULTI HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LKVPIRKGV_ REV__ENST00000484240.1_1_17:44798950-44799232:-|nuORF 0.5247636613948944 0.34703895399870666 2 G 1 -1 6.9897 0 0 0.69295 0 0 198.1992920143004 750.4476412408811 948.6469332551815 0 0 0 0 0 0 0 0 0 G 0.69295 + + 19 + NaN NaN 148315.5 NaN 22604 6205 28809 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28813 112.88 NaN 1577700 35 0 760480 0.327 -1 0 75 440.81363059754557 879.6127082618912 2 440.81390380859375 MULTI HCD FTMS 0 0 0 28812 181960.09375 0.041719972085051744 59 -0.43506622314453125 1 NaN NaN 2 A 1 -1 6.7474 0 0 0.76709 0 0 157.18374307431662 648.3798922174436 805.5636352917602 0 0 0 0 0 0.3252574989159953 0 0 0 A 0.76709 - 9 + NaN NaN 298308.7 NaN 22605 6206 28812 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28818 112.9 NaN 485150 35 0 42010 0.411 + 28194 TKRLLLRI 8 107 506.85310093337506 NaN 0 506.8533020019531 PEAK HCD FTMS 0 0 0 28817 165334.546875 0.9418607600942127 -1 0.00624847412109375 1 Unmodified _TKRLLLRI_ ENST00000461865.1_1_X:38008966-38013244:-|nuORF 0.6014990680409731 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 3.0989 0 0 0.30631 0 0 184.18090259833747 677.447829653274 861.6287322516114 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.30631 - 18 + NaN NaN 236497.5 NaN 22606 6210 28817 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28820 112.91 NaN 1062400 35 0 128180 0.327 -1 0 91 462.82679164735663 923.6390303615133 2 462.8268127441406 MULTI HCD FTMS 0 0 0 28819 247768.71875 0.05386134230367611 72 -0.523681640625 1 NaN NaN 2 T 1 -1 3.9794 0 0 0.43084 0 0 360.2877548457921 459.27720056705317 819.5649554128453 0 0 0 0 0 0 0 0 0 T 0.43084 - 11 + NaN NaN 268632.1 NaN 22607 6211 28819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28821 112.91 NaN 64945 35 0 33246 0.261 + 30365 VLILIIIAVKL 11 22 604.4421616424466 NaN 0 604.4423217773438 PEAK HCD FTMS 0 0 0 28819 86437.7890625 0.6429818567445398 36 -0.27237701416015625 2 Unmodified _VLILIIIAVKL_ REV__tr|U7SND1|U7SND1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01896PE=4SV=1 0.3070304955306653 0.3412491863730806 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114729.5 NaN 22608 6211 28819 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28823 112.92 NaN 354380 35 0 65039 0.327 + 12072 KKARKKKV 8 70 493.35310717677066 984.6916614203413 2 493.3533935546875 MULTI HCD FTMS 0 0 0 28822 170334.96875 0.48100577836765523 5 -0.05472564697265625 1 Unmodified _KKARKKKV_ ENSG00000103496|ENST00000313843|STX4;ENST00000487411.5_1_16:31045754-31051121:+|nuORF;ENST00000493902.5_1_16:31047079-31051121:+|nuORF;nc|ENSG00000103496|Q12846-2|STX4 0.6903765706972694 0.5409681170271811 2 K 1 7 5.4846 0 0 0.55698 0 0 636.4644102990508 217.10805689029533 853.5724671893461 0 0 0 0 0 0 0 0 0 + K 0.55698 + + 23 + NaN NaN 144395.5 NaN 22609 6212 28822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28824 112.92 NaN 831780 35 0 84846 0.261 -1 0 104 462.82679164735663 923.6390303615133 2 462.8271484375 MULTI HCD FTMS 0 0 0 28822 146394.5625 0.031824064320909784 73 -0.5273513793945312 2 NaN NaN 2 T 1 -1 3.9794 0 0 0.43084 0 0 360.2871493306066 459.27717004947505 819.5643193800817 0 0 0 0 0 0 0 0 0 T 0.43084 - 16 + NaN NaN 220127.1 NaN 22610 6212 28822 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28826 112.93 NaN 896890 35 0 132980 0.327 + 15003 LLLLKKLT 8 94 471.34016006417863 NaN 0 471.3401794433594 PEAK HCD FTMS 0 0 0 28825 265964.75 0.824628340008166 8 -0.07221221923828125 1 Unmodified _LLLLKKLT_ REV__ENSG00000066279|ENST00000367409|ASPM;REV__nc|ENSG00000066279|Q8IZT6-2|ASPM 0.7936320650641473 0.38822285293237185 2 H 1 -1 1.9897 0 0 0.21152 0 0 350.3140348726948 450.27854334049067 800.5925782131854 0 0 0 0 0 0 0 0 0 H 0.21152 - 13 + NaN NaN 220386.2 NaN 22611 6213 28825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28827 112.93 NaN 280880 35 0 28316 0.261 + 28173 TKKKKKKKG 9 57 537.3793791148106 1072.7442052964211 2 537.3795776367188 MULTI HCD FTMS 0 0 0 28825 133950.15625 0.7492509945952749 6 -0.05966949462890625 2 Unmodified _TKKKKKKKG_ REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF 0 0.3510170533115441 2 Q 1 -1 0.48455 0 0 0.045169 0 0 746.5727708255212 195.09536157779533 941.6681324033165 0 0 0 0 0 0 0 0 0 Q 0.045169 - 8 + NaN NaN 130265.9 NaN 22612 6213 28825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28828 112.94 NaN 377630 35 0 64217 0.261 -1 0 58 515.4234826471346 NaN 0 515.424072265625 PEAK HCD FTMS 0 0 0 28825 64649.2890625 0.9414972145702483 -1 0.00927734375 3 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 149767.3 NaN 22613 6213 28825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28829 112.94 NaN 87923 35 0 15421 0.261 -1 0 43 580.416259765625 NaN 0 580.416259765625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 4 NaN NaN 2 G 1 -1 2.4743 0 0 0.21351 0 0 805.6061768048843 293.15998254947505 1098.7661593543594 0 0 0 0 0 0 0 0 0 G 0.21351 - 3 + NaN NaN 112083 NaN 22614 6213 28825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28833 112.96 NaN 971540 35 0 152870 0.327 -1 0 108 427.3140333888854 NaN 0 427.3138427734375 PEAK HCD FTMS 0 0 0 28832 319884.6875 0.5238258846483953 9 -0.0714111328125 1 NaN NaN 2 A 1 -1 3.0989 0 0 0.36346 0 0 174.21105616535277 604.3556612604124 778.5667174257651 0 0 0 0 0 0 0 0 0 A 0.36346 - 2 + NaN NaN 241035 NaN 22615 6216 28832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28834 112.96 NaN 707880 35 0 164590 0.268 -1 0 58 432.3005029506775 862.5864529681551 2 432.30072021484375 MULTI HCD FTMS 0 0 0 28832 160267.71875 0.04141286594897039 65 -0.4624176025390625 2 NaN NaN 2 P 1 -1 3.9794 0 0 0.46133 0 0 642.4554695470598 120.05059992008046 762.5060694671403 0 0 0 0 0 0 0 0 0 P 0.46133 - 23 + NaN NaN 202949.8 NaN 22616 6216 28832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28835 112.96 NaN 249520 35 0 18108 0.261 -1 0 63 478.3484578170413 954.6823627008827 2 478.347900390625 MULTI HCD FTMS 0 0 0 28832 61580.07421875 0.5153075560446239 9 -0.0714111328125 3 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.41683 0 0 112.19602224229989 692.4083956354124 804.6044178777123 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.41683 - 25 + NaN NaN 130073.6 NaN 22617 6216 28832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28836 112.97 NaN 192240 35 0 11419 0.261 -1 MKKLKLKK 8 69 516.8531713331117 1031.6917897330234 2 516.85400390625 MULTI HCD FTMS 0 0 0 28832 16693.66015625 0.21216077599949085 7 -0.05710601806640625 4 Oxidation (M) _M(Oxidation (M))KKLKLKK_ ENST00000420054.5_1_1:54651905-54661258:-|nuORF;ENST00000490863.5_1_1:54651905-54653456:-|nuORF;REV__ENST00000420054.5_1_1:54651905-54661258:-|nuORF;REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.38572 0 0 184.26490662820714 697.3612764947874 881.6261831229945 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.38572 + + 7 + NaN NaN 122941.3 NaN 22618 6216 28832 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28838 112.97 NaN 632630 35 0 105670 0.411 -1 0 85 449.33983736671075 NaN 0 449.3271789550781 PEAK HCD FTMS 0 0 0 28837 12459.2529296875 0.5460773079508306 3 -0.0205078125 1 NaN NaN 2 P 1 -1 4.6041 0 0 0.51347 0 0 557.463993725806 239.12075220279533 796.5847459286013 0 0 0 0 0 0 0 0 0 P 0.51347 - 11 + NaN NaN 288280.8 NaN 22619 6217 28837 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28843 113 NaN 348200 35 0 37990 0.411 + 28245 TLKKKKRK 8 94 515.3664281803933 1028.7183034275865 2 515.3666381835938 MULTI HCD FTMS 0 0 0 28842 48604.953125 0.28799031316495616 14 -0.09679412841796875 1 Unmodified _TLKKKKRK_ ENSG00000175595|ENST00000311895|ERCC4 0.6903765706972694 0.5409681170271811 2 {M(Oxidation (M))|F} 1 8 2.2185 0 0 0.21566 0 0 711.5515076285616 167.10773645572502 878.6592440842866 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.21566 - 23 + NaN NaN 211782.6 NaN 22620 6221 28842 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28845 113.01 NaN 1274700 35 0 647760 0.326 + -1 EEDDDEMHER 10 70 440.82652738357007 NaN 0 440.8138732910156 PEAK HCD FTMS 0 0 0 28844 7960.55224609375 0.5401086882197601 1 -0.00688934326171875 1 Oxidation (M) _EEDDDEM(Oxidation (M))HER_ REV__ENSG00000197506|ENST00000376238|SLC28A3 0.6268255596534771 0.33964781322640114 2 A 1 -1 5.4846 0 0 0.6235 0 0 157.20950290177592 648.3834322565061 805.592935158282 0 0 0 0 0 0 0 0 0 A 0.6235 - 12 + NaN NaN 335772.3 NaN 22621 6222 28844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28847 113.01 NaN 323840 35 0 61119 0.411 + 31223 VVPRRVLL 8 69 476.3269324025613 950.6393118719226 2 476.3270568847656 MULTI HCD FTMS 0 0 0 28846 79270.4296875 0.025784703507604933 87 -0.5990371704101562 1 Unmodified _VVPRRVLL_ ENST00000535977.5_1_16:678431-678971:+|nuORF 0 0.5419923896992614 2 P 1 7 5.4846 0 0 0.57693 0 0 492.36727322156366 358.19123254947505 850.5585057710387 0 0 0 0 0 0 0 0 0 + P 0.57693 + + 32 + NaN NaN 184708.7 NaN 22622 6223 28846 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28849 113.02 NaN 311090 35 0 31979 0.412 + 16334 LRKVLAKGK 9 97 506.85310093337506 NaN 0 506.853271484375 PEAK HCD FTMS 0 0 0 28848 108626.59375 0.6188127532304053 13 -0.08978271484375 1 Unmodified _LRKVLAKGK_ OR2M5|p.G306A|1|0.18|ENSG00000162727|chr1:248146064-248146064|G/C|missense_variant 0.5247636613948944 0.2927039108006614 2 A 1 8 3.0989 0 0 0.30631 0 0 245.23756349184436 692.4071258761164 937.6446893679608 0 0 0 0 0 0 0 0 0 + A 0.30631 + + 13 + NaN NaN 187898 NaN 22623 6224 28848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28851 113.03 NaN 636180 35 0 75991 0.411 -1 0 119 462.82679164735663 923.6390303615133 2 462.82708740234375 MULTI HCD FTMS 0 0 0 28850 188792.09375 0.04104067550172316 86 -0.594207763671875 1 NaN NaN 2 TP 2 -1 8.9621 0 0 0.9703 0 0 461.383794621082 261.1337984674438 722.5175930885258 0 0 0 0 0 0.6989700043360187 0 0 0 TP 0.9703 - 19 + NaN NaN 286514.4 NaN 22624 6225 28850 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28854 113.04 NaN 652470 35 0 75800 0.327 + -1 RINNCCECCT 10 86 462.83973000668595 NaN 0 462.82708740234375 PEAK HCD FTMS 0 0 0 28853 14348.9072265625 1 0 0 1 4 Carbamidomethyl (C) _RINNC(Carbamidomethyl (C))C(Carbamidomethyl (C))EC(Carbamidomethyl (C))C(Carbamidomethyl (C))T_ REV__ENSG00000205359|ENST00000506729|SLCO6A1;REV__nc|ENSG00000205359|Q86UG4-2|SLCO6A1;REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1 0.15932191953741626 0.34004793154798674 2 AT 2 -1 5.9691 0 0 0.64624 0 0 289.29065278505317 459.2777498834594 748.5684026685126 0 0 0 0 0 0 0 0 0 AT 0.64624 - 7 + NaN NaN 192455.9 NaN 22625 6227 28853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28855 113.05 NaN 302700 35 0 48806 0.261 + 30290 VKKKRAKK 8 61 493.35310717677066 984.6916614203413 2 493.3527526855469 MULTI HCD FTMS 0 0 0 28853 96658.4375 0.27295197989396325 20 -0.139373779296875 2 Unmodified _VKKKRAKK_ REV__ENSG00000103496|ENST00000313843|STX4;REV__ENST00000487411.5_1_16:31045754-31051121:+|nuORF;REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF;REV__nc|ENSG00000103496|Q12846-2|STX4 0 0.5419923896992614 2 K 1 -1 5.4846 0 0 0.55698 0 0 636.4646239220976 217.10772119693596 853.5723451190336 0 0 0 0 0 0 0 0 0 K 0.55698 + + 10 + NaN NaN 143602.4 NaN 22626 6227 28853 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28860 113.07 NaN 454640 35 0 315380 0.411 + 15074 LLYKLLKLLK 10 46 622.9370070722449 NaN 0 622.9369506835938 PEAK HCD FTMS 0 0 0 28859 30709.078125 0.5829100763390023 -1 0.00624847412109375 1 Unmodified _LLYKLLKLLK_ REV__ENST00000509297.5_1_5:135469533-135483594:+|nuORF;REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 225355.7 NaN 22627 6231 28859 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28865 113.1 NaN 509710 35 0 142530 0.411 -1 0 80 449.32717602193026 896.6397991106605 2 449.3269958496094 MULTI HCD FTMS 0 0 0 28864 53529.09765625 0.008195278052612644 81 -0.5634689331054688 1 NaN NaN 2 A 1 -1 3.4949 0 0 0.38977 0 0 174.2109640470548 648.3814791315061 822.5924431785609 0 0 0 0 0 0 0 0 0 A 0.38977 - 22 + NaN NaN 245399.3 NaN 22628 6235 28864 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28868 113.11 NaN 228660 35 0 37384 0.327 + 30294 VKKQLKLR 8 67 506.85310093337506 NaN 0 506.8530578613281 PEAK HCD FTMS 0 0 0 28867 64163.25390625 0.3655185938843647 26 -0.1879730224609375 1 Unmodified _VKKQLKLR_ REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF 0 0.38822285293237185 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.54212 0 0 359.3474730064424 502.2966049075948 861.6440779140372 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54212 - 8 + NaN NaN 129790.8 NaN 22629 6237 28867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28869 113.11 NaN 135220 35 0 12958 0.261 -1 0 52 478.3484578170413 954.6823627008827 2 478.34771728515625 MULTI HCD FTMS 0 0 0 28867 14512.6328125 0.12144300638249855 29 -0.20758056640625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 3 NaN NaN 118731.7 NaN 22630 6237 28867 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28872 113.13 NaN 167820 35 0 65767 0.411 + 30943 VRLALVVIV 9 58 491.3455850145148 NaN 0 491.34527587890625 PEAK HCD FTMS 0 0 0 28871 30577.109375 0.3077605977076028 -2 0.0156402587890625 1 Unmodified _VRLALVVIV_ ENSG00000010319|ENST00000231721|SEMA3G 0 0.29524684227089293 2 A 1 8 3.0989 0 0 0.316 0 0 214.22254007003136 692.4069918268186 906.62953189685 0 0 0 0 0 0 0 0 0 + A 0.316 + + 5 + NaN NaN 148165.9 NaN 22631 6239 28871 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28878 113.16 NaN 207190 35 0 83730 0.327 + 30282 VKKKKIKR 8 47 514.3762869538019 NaN 0 514.358642578125 PEAK HCD FTMS 0 0 0 28877 50953.97265625 1 0 0 1 Unmodified _VKKKKIKR_ ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000562367.1_1_16:58208309-58230657:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF 0.6903765706972694 0.38822285293237185 2 N 1 8 2.2185 0 0 0.21607 0 0 662.0347566695194 247.6345156305297 909.6692723000491 0 0 0 0 0 0 0 0 0 N 0.21607 - 4 + NaN NaN 123892.3 NaN 22632 6244 28877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28879 113.16 NaN 194760 35 0 29346 0.261 + 28199 TKRRLLLI 8 60 506.85310093337506 NaN 0 506.85284423828125 PEAK HCD FTMS 0 0 0 28877 48336 0.27535552950305847 33 -0.2333831787109375 2 Unmodified _TKRRLLLI_ nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 0.7936320650641473 0.38822285293237185 2 N 1 8 3.9794 0 0 0.39334 0 0 157.18533247107922 737.4312838190061 894.6166162900854 0 0 0 0 0 0 0 0 0 N 0.39334 - 2 + NaN NaN 123244.5 NaN 22633 6244 28877 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28881 113.17 NaN 417300 35 0 45491 0.411 -1 0 95 462.82679164735663 923.6390303615133 2 462.8269348144531 MULTI HCD FTMS 0 0 0 28880 88137.7109375 0.019159865872564453 106 -0.72869873046875 1 NaN NaN 2 T 1 -1 7.6587 0 0 0.82919 0 0 461.3817194257695 358.1926363580688 819.5743557838383 0 0 0 0 0 0.3054621874040891 0 0 0 T 0.82919 - 26 + NaN NaN 217110.6 NaN 22634 6245 28880 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28884 113.18 NaN 183900 35 0 16629 0.411 + 12182 KKLRKLLKRLQ 11 59 475.33713906748335 NaN 0 475.3368835449219 PEAK HCD FTMS 0 0 0 28883 49646.16796875 0.5802872566928305 1 -0.0070037841796875 1 Unmodified _KKLRKLLKRLQ_ ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 0.08335046087909445 0.3418837022149213 2 R 1 10 6.9061 0 0 0.72799 0 0 474.37934297696046 315.1592196100219 789.5385625869824 0 0 0 0 0 0.3807196863200844 0 0 0 + R 0.72799 + + 3 + NaN NaN 152084.5 NaN 22635 6247 28883 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28886 113.19 NaN 100690 35 0 13323 0.412 + 30367 VLILVLKRF 9 61 550.8795357639726 NaN 0 550.8794555664062 PEAK HCD FTMS 0 0 0 28885 10066.267578125 0.24143527707492213 9 -0.0676422119140625 1 Unmodified _VLILVLKRF_ ENSG00000223443|ENST00000333796|USP17L2;ENSG00000223569|ENST00000456464|USP17L15;ENSG00000225327|ENST00000530484|USP17L3;ENSG00000226430|ENST00000530447|USP17L7;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000227551|ENST00000415041|USP17L12;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000230549|ENST00000529559|USP17L1;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000236125|ENST00000526929|USP17L4;ENSG00000237038|ENST00000527080|USP17L8;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000249811|ENST00000506414|USP17L21;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000250844|ENST00000504209|USP17L18;nc|ENSG00000205946|Q6QN14|USP17L6P 0.5247636613948944 0.2927039108006614 2 C 1 9 3.0989 0 0 0.28179 0 0 447.40062678417263 546.3236788385374 993.7243056227101 0 0 0 0 0 0 0 0 0 C 0.28179 - 4 + NaN NaN 121698.7 NaN 22636 6248 28885 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28888 113.2 NaN 400080 35 0 45444 0.327 -1 0 69 462.82679164735663 923.6390303615133 2 462.8269348144531 MULTI HCD FTMS 0 0 0 28887 98612.265625 0.021436882835594667 110 -0.7553634643554688 1 NaN NaN 2 T 1 -1 3.9794 0 0 0.43084 0 0 360.28949530467577 459.2777498834594 819.5672451881352 0 0 0 0 0 0 0 0 0 T 0.43084 - 13 + NaN NaN 156211.5 NaN 22637 6249 28887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28889 113.2 NaN 181750 35 0 40757 0.261 + 31224 VVPRRVLL 8 49 476.3269324025613 950.6393118719226 2 476.3266906738281 MULTI HCD FTMS 0 0 0 28887 75279.2109375 0.024486459099085325 113 -0.775177001953125 2 Unmodified _VVPRRVLL_ ENST00000535977.5_1_16:678431-678971:+|nuORF 0 0.5419923896992614 2 Q 1 8 5.4846 0 0 0.57693 0 0 624.4676027428195 195.0949648492797 819.5625675920992 0 0 0 0 0 0 0 0 0 Q 0.57693 - 5 + NaN NaN 121820.8 NaN 22638 6249 28887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28890 113.2 NaN 206160 35 0 36102 0.261 + 30291 VKKKRAKK 8 54 493.3524581814598 NaN 0 493.35296630859375 PEAK HCD FTMS 0 0 0 28887 47583.12109375 0.5110780264557901 8 -0.06021881103515625 3 Unmodified _VKKKRAKK_ REV__ENSG00000103496|ENST00000313843|STX4;REV__ENST00000487411.5_1_16:31045754-31051121:+|nuORF;REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF;REV__nc|ENSG00000103496|Q12846-2|STX4 0 0.38822285293237185 2 Q 1 -1 3.4949 0 0 0.35492 0 0 658.5192036170228 195.09523950748283 853.6144431245056 0 0 0 0 0 0 0 0 0 Q 0.35492 - 5 + NaN NaN 122554 NaN 22639 6249 28887 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28893 113.21 NaN 145210 35 0 42377 0.411 + 23757 RRHQKKIR 8 65 561.3610016297764 NaN 0 561.3614501953125 PEAK HCD FTMS 0 0 0 28892 81574.640625 1 0 0 1 Unmodified _RRHQKKIR_ ATP10A|p.G786R|1|0.18|ENSG00000206190|chr15:25708289-25708289|C/G|missense_variant 2.302733041254933 0.38822285293237185 2 Q 1 7 3.4949 0 0 0.31184 0 0 750.4960683456871 239.12069116763908 989.6167595133262 0 0 0 0 0 0 0 0 0 + Q 0.31184 + + 9 + NaN NaN 133451.8 NaN 22640 6251 28892 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28896 113.23 NaN 158120 35 0 12226 0.411 + -1 CHCCSWTRFCV 11 80 505.8635051588011 NaN 0 505.8634033203125 PEAK HCD FTMS 0 0 0 28895 27534.802734375 0.1874999002505812 40 -0.2693328857421875 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))HC(Carbamidomethyl (C))CSWTRFC(Carbamidomethyl (C))V_ REV__ENST00000378720.7_1_13:47356913-47361232:-|nuORF 0.09484139111097674 0.34185110575506755 2 G 1 -1 5.4846 0 0 0.54318 0 0 199.23050825732486 750.4481905572874 949.6786988146123 0 0 0 0 0 0 0 0 0 G 0.54318 - 16 + NaN NaN 132269.3 NaN 22641 6253 28895 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28900 113.25 NaN 859170 35 0 433980 0.411 -1 LHCDACEDVC 10 73 440.82649950177847 NaN 0 440.8137512207031 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),3 Carbamidomethyl (C) _(Acetyl (Protein N-term))LHC(Carbamidomethyl (C))DAC(Carbamidomethyl (C))EDVC(Carbamidomethyl (C))_ ENSG00000151092|ENST00000280700|NGLY1;ENST00000496726.5_1_3:25777437-25777596:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1 0.776531954647913 0.3395196853010637 2 A 1 -1 3.0989 0 0 0.3523 0 0 157.20953740505337 648.3808687799436 805.5904061849969 0 0 0 0 0 0 0 0 0 A 0.3523 + + 9 + NaN NaN 348467.6 NaN 22642 6256 28899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28902 113.26 NaN 270410 35 0 123230 0.412 -1 0 65 490.33963881324183 489.33236234664184 1 491.3455810546875 MULTI HCD FTMS 0 0 0 28901 9705.185546875 0.6174671303976984 -1 0.0070037841796875 1 NaN NaN 2 P 1 -1 0.9691 0 0 0.19805 0 0 84.09247694800747 305.15891443424067 389.25139138224813 0 0 0 0 0 0 0 0 0 P 0.19805 - 3 + NaN NaN 169570.4 NaN 22643 6257 28901 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28908 113.29 NaN 247110 35 0 30155 0.327 -1 0 52 462.82679164735663 923.6390303615133 2 462.8269348144531 MULTI HCD FTMS 0 0 0 28907 51100.23046875 0.011108452346041294 123 -0.8462142944335938 1 NaN NaN 2 T 1 -1 3.3718 0 0 0.36506 0 0 461.38287909373827 358.1913241022094 819.5742031959477 0 0 0 0 0 0.28872548999643577 0 0 0 T 0.36506 - 4 + NaN NaN 146473.5 NaN 22644 6262 28907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28909 113.29 NaN 92158 35 0 14817 0.261 + -1 EEDEDEDYYRN 11 38 506.85310093337506 NaN 0 506.85284423828125 PEAK HCD FTMS 0 0 0 28907 29877.9609375 0.1702056801228279 51 -0.3475494384765625 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EEDEDEDYYRN_ REV__ENSG00000050405|ENST00000341247|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-4|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-5|LIMA1 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119883.5 NaN 22645 6262 28907 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28914 113.32 NaN 138690 35 0 18774 0.411 + 28200 TKRRLLLI 8 75 506.85310093337506 NaN 0 506.853271484375 PEAK HCD FTMS 0 0 0 28913 24062.724609375 0.13707804278593033 55 -0.376220703125 1 Unmodified _TKRRLLLI_ nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 0.7936320650641473 0.38822285293237185 2 {M(Oxidation (M))|F} 1 8 5.4846 0 0 0.54212 0 0 359.3506301287766 502.2963984430394 861.647028571816 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54212 - 8 + NaN NaN 135668.8 NaN 22646 6266 28913 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28920 113.35 NaN 132980 35 0 26807 0.411 + 21171 PPRVKVKK 8 52 476.3269324025613 950.6393118719226 2 476.32635498046875 MULTI HCD FTMS 0 0 0 28919 49747.1171875 0.016181502637168544 135 -0.9358139038085938 1 Unmodified _PPRVKVKK_ REV__ENSG00000079432|ENST00000681038|CIC;REV__nc|ENSG00000079432|Q96RK0-2|CIC 0.6903765706972694 0.5409681170271811 2 Q 1 -1 5.4846 0 0 0.57693 0 0 624.4678468834445 195.09462915592033 819.5624760393648 0 0 0 0 0 0 0 0 0 Q 0.57693 - 12 + NaN NaN 126359.4 NaN 22647 6271 28919 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28925 113.38 NaN 130670 35 0 62185 0.411 + -1 LLELILIL 8 48 491.3353473499603 NaN 0 491.34539794921875 PEAK HCD FTMS 0 0 0 28924 6595.24462890625 1 0 0 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LLELILIL_ REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF 0 0.38822285293237185 2 N 1 -1 0.088644 0 0 0.0090392 0 0 716.7445949911331 146.8433016412719 863.587896632405 0 0 0 0 0 0 0 0 0 N 0.0090392 - 2 + NaN NaN 135468 NaN 22648 6275 28924 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28929 113.4 NaN 91084 35 0 31985 0.411 -1 0 42 630.4425231839647 629.4352467173646 1 630.442626953125 MULTI HCD FTMS 0 0 0 28928 78526.9765625 0.0005397749407379495 254 -1.8921661376953125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 118421.7 NaN 22649 6278 28928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28933 113.42 NaN 25269 35 0 4119.5 0.411 + -1 CCMTWFVSGT 10 29 624.7450561523438 NaN 0 624.7450561523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))C(Carbamidomethyl (C))MTWFVSGT_ REV__ENSG00000163527|ENST00000295770|STT3B;REV__ENST00000423527.5_1_3:31574490-31661461:+|nuORF;REV__ENST00000453168.5_1_3:31574490-31661308:+|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109959.4 NaN 22650 6281 28932 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28942 113.47 NaN 98396 35 0 9869.5 0.411 + -1 EEDEDEDYYRN 11 66 506.85310093337506 NaN 0 506.853271484375 PEAK HCD FTMS 0 0 0 28941 27182.6015625 0.15485103538796863 78 -0.5388565063476562 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EEDEDEDYYRN_ REV__ENSG00000050405|ENST00000341247|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-2|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-4|LIMA1;REV__nc|ENSG00000050405|Q9UHB6-5|LIMA1 0.09484139111097674 0.34185110575506755 2 {M(Oxidation (M))|F} 1 -1 6.9061 0 0 0.68263 0 0 359.3483005573658 502.29792200260005 861.6462225599658 0 0 0 0 0 0.2302046884880938 0 0 0 {M(Oxidation (M))|F} 0.68263 - 4 + NaN NaN 136546.6 NaN 22651 6289 28941 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28947 113.5 NaN 85751 35 0 33857 0.411 + 30944 VRLALVVIV 9 39 491.3455850145148 NaN 0 491.3453063964844 PEAK HCD FTMS 0 0 0 28946 37272.0703125 0.37514581566540894 52 -0.358673095703125 1 Unmodified _VRLALVVIV_ ENSG00000010319|ENST00000231721|SEMA3G 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116959.3 NaN 22652 6293 28946 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28949 113.51 NaN 95183 35 0 17338 0.411 + 12172 KKKLIGKH 8 54 476.3269324025613 950.6393118719226 2 476.32659912109375 MULTI HCD FTMS 0 0 0 28948 14269.96484375 0.004641665423166749 158 -1.1242904663085938 1 Unmodified _KKKLIGKH_ REV__ENSG00000143126|ENST00000271332|CELSR2;REV__ENST00000489018.1_1_1:109815040-109816668:+|nuORF 0.6903765706972694 0.5409681170271811 2 D 1 -1 3.0989 0 0 0.32599 0 0 360.2864198814913 472.3100679986938 832.5964878801851 0 0 0 0 0 0 0 0 0 D 0.32599 - 3 + NaN NaN 117971.7 NaN 22653 6294 28948 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28957 113.55 NaN 48458 35 0 2984.6 0.411 + 16700 LWYVYQFYL 9 40 647.8303833007812 NaN 0 647.8303833007812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LWYVYQFYL_ REV__ENSG00000135926|ENST00000258412|TMBIM1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112907.5 NaN 22654 6301 28956 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28966 113.61 NaN 24069 35 0 6670 0.411 + 12186 KKMHRINRK 9 22 605.8704223632812 NaN 0 605.8704223632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKMHRINRK_ ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105106.5 NaN 22655 6309 28965 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28968 113.61 NaN 30658 35 0 4011.1 0.327 -1 0 24 647.1491088867188 NaN 0 647.1491088867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101684.5 NaN 22656 6310 28967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28969 113.62 NaN 84218 35 0 15964 0.264 + 22641 QVVVVRKR 8 35 492.32740023366466 NaN 0 491.84783935546875 PEAK HCD FTMS 0 0 0 28967 13611.205078125 1 0 0 2 Unmodified _QVVVVRKR_ ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB;nc|ENSG00000188677|Q9HBI1-3|PARVB 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98348.2 NaN 22657 6310 28967 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28971 113.62 NaN 84443 35 0 8641.3 0.411 + 15020 LLLTRLKR 8 65 506.85304681171164 NaN 0 506.8531799316406 PEAK HCD FTMS 0 0 0 28970 14289.7451171875 0.6035420268655763 5 -0.03792572021484375 1 Unmodified _LLLTRLKR_ REV__ENSG00000171017|ENST00000306708|LRRC8E 0.7936320650641473 0.38822285293237185 2 Q 1 -1 3.0989 0 0 0.30631 0 0 685.5207165708858 195.0944765680297 880.6151931389155 0 0 0 0 0 0 0 0 0 Q 0.30631 - 1 + NaN NaN 113717.2 NaN 22658 6311 28970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28973 113.63 NaN 89424 35 0 10044 0.411 + 15021 LLLTRLKR 8 59 506.85304681171164 NaN 0 506.8524169921875 PEAK HCD FTMS 0 0 0 28972 9125.345703125 0.38541832596361447 6 -0.04381561279296875 1 Unmodified _LLLTRLKR_ REV__ENSG00000171017|ENST00000306708|LRRC8E 0.7936320650641473 0.38822285293237185 2 P 1 -1 1.1092 0 0 0.10964 0 0 685.498042010339 226.12209497623283 911.6201369865718 0 0 0 0 0 0 0 0 0 P 0.10964 - 1 + NaN NaN 113604.2 NaN 22659 6312 28972 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28976 113.64 NaN 161020 35 0 110380 0.327 -1 0 23 621.4185579060346 620.4112814394346 1 621.4175415039062 MULTI HCD FTMS 0 0 0 28975 96717.4453125 0.1167556127575656 93 -0.6510238647460938 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119386.2 NaN 22660 6314 28975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28977 113.65 NaN 61454 35 0 16401 0.261 + 33098 YDSIIVFYN 9 37 567.280166750311 NaN 0 566.947265625 PEAK HCD FTMS 0 0 0 28975 17223.060546875 0.6310846930415421 3 -0.02330780029296875 2 Unmodified _YDSIIVFYN_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 6.723162845929126 0.26266733336404485 2 S 1 8 11.237 0 0 0.9922 0 0 278.09321816683433 764.3993624322874 1042.4925805991218 0 0 0 0 0 0.4247425010840047 0 0 0 + S 0.9922 + + 2 + NaN NaN 118380.2 NaN 22661 6314 28975 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28979 113.65 NaN 102190 35 0 28394 0.411 + 32662 WNPRVKRVGR 10 43 634.3774466137717 1266.7403402943432 2 634.3779907226562 MULTI HCD FTMS 0 0 0 28978 28274.25 0.32182145531501005 1 -0.00746917724609375 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 1.4819007175156935 0.4674597685733628 2 {I|L} 1 10 9.6041 0 0 0.75817 0 0 819.406253246995 331.2270907037719 1150.6333439507669 0 0 0 0 0 0.5 0 0 0 {I|L} 0.75817 - 3 + NaN NaN 121627.8 NaN 22662 6315 28978 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28984 113.68 NaN 61089 35 0 15491 0.411 + 30942 VRLALVVIV 9 46 491.34567406939397 980.676795205588 2 491.345458984375 MULTI HCD FTMS 0 0 0 28983 10355.2236328125 0.5975598086771525 3 -0.02072906494140625 1 Unmodified _VRLALVVIV_ ENSG00000010319|ENST00000231721|SEMA3G 0 0.3510170533115441 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 111562.2 NaN 22663 6319 28983 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28990 113.71 NaN 66307 35 0 16272 0.411 -1 0 53 492.34991455078125 NaN 0 492.34991455078125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 A 1 -1 3.0989 0 0 0.31568 0 0 507.68355898261876 399.9501131647094 907.6336721473282 0 0 0 0 0 0 0 0 0 A 0.31568 - 2 + NaN NaN 107372.6 NaN 22664 6324 28989 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 28998 113.76 NaN 179000 35 0 67815 0.411 -1 0 68 484.41147565977576 NaN 0 484.83966064453125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 0.088644 0 0 0.0091687 0 0 359.4318247552953 444.3105867975219 803.7424115528172 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.0091687 - 1 + NaN NaN 147585.5 NaN 22665 6331 28997 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29002 113.78 NaN 237410 35 0 63832 0.327 + 32663 WNPRVKRVGR 10 43 634.3780020565389 1266.7414511798777 2 634.3779907226562 MULTI HCD FTMS 0 0 0 29001 67805.875 0.7564256268574765 -2 0.01336669921875 1 Unmodified _WNPRVKRVGR_ ENST00000570101.5_1_16:58700792-58701185:-|nuORF 1.4819007175156935 0.4674597685733628 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 122948.7 NaN 22666 6334 29001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29003 113.78 NaN 81863 35 0 29172 0.263 + 23797 RRPPLRRRRVL 11 38 492.32696533203125 NaN 0 492.32696533203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _RRPPLRRRRVL_ ENST00000357060.7_2_10:105990583-105992116:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96670.6 NaN 22667 6334 29001 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29008 113.81 NaN 110470 35 0 54172 0.411 + 23829 RRRRTRRA 8 49 564.3591044854578 NaN 0 564.3585205078125 PEAK HCD FTMS 0 0 0 29007 39696.640625 0.6342260672546719 -6 0.04178619384765625 1 Unmodified _RRRRTRRA_ REV__ENST00000502654.5_1_4:76584063-76598547:-|nuORF;REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF 0.6014990680409731 0.38822285293237185 2 G 1 -1 3.9794 0 0 0.35319 0 0 862.5469920746281 204.1160830133422 1066.6630750879704 0 0 0 0 0 0 0 0 0 G 0.35319 - 4 + NaN NaN 127692.9 NaN 22668 6338 29007 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29010 113.82 NaN 38487 35 0 4557.8 0.411 -1 0 43 583.4414543130395 NaN 0 583.1144409179688 PEAK HCD FTMS 0 0 0 29009 7254.40869140625 0.24732300051139178 3 -0.02079010009765625 1 NaN NaN 2 Y 1 -1 3.0989 0 0 0.26603 0 0 541.4608982727601 457.31882654361567 998.7797248163758 0 0 0 0 0 0 0 0 0 Y 0.26603 - 2 + NaN NaN 108667.8 NaN 22669 6339 29009 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29014 113.84 NaN 26537 35 0 3162.1 0.411 -1 KYMDVQFDF 9 27 604.7671508789062 NaN 0 604.7671508789062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ ENSG00000197879|ENST00000648651|MYO1C;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C 4.897010918128616 0.2715166107592903 2 D{M(Oxidation (M))|F} 2 -1 10.969 0 0 0.9084 0 0 165.0763178693374 777.3261202447874 942.4024381141248 0 0 0 0 0 0 0 0 0 D{M(Oxidation (M))|F} 0.9084 + + 3 + NaN NaN 101970.6 NaN 22670 6342 29013 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29028 113.92 NaN 34440 35 0 6640.1 0.412 + 31055 VSVLMLFIKK 10 41 589.3711905223479 NaN 0 589.3706665039062 PEAK HCD FTMS 0 0 0 29027 51611.75 0.45273952029226194 75 -0.5423202514648438 1 Unmodified _VSVLMLFIKK_ REV__tr|U7SU41|U7SU41_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01090PE=4SV=1 0.4007161486938917 0.3398413315442166 2 Y 1 -1 1.5938 0 0 0.13544 0 0 607.5003633671582 403.1364840143188 1010.6368473814771 0 0 0 0 0 0 0 0 0 Y 0.13544 - 2 + NaN NaN 101103 NaN 22671 6355 29027 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29030 113.93 NaN 46184 35 0 8959.6 0.411 -1 0 46 575.3555201521907 574.3482436855907 1 575.355224609375 MULTI HCD FTMS 0 0 0 29029 52508.09375 0.2643654994526275 166 -1.284027099609375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118096.1 NaN 22672 6356 29029 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29032 113.94 NaN 24155 35 0 5596.7 0.411 -1 0 37 633.3975744249565 632.3902979583564 1 633.3968505859375 MULTI HCD FTMS 0 0 0 29031 31071.982421875 0.2484881896355942 125 -0.93292236328125 1 NaN NaN 2 R 1 -1 3.9794 0 0 0.62926 0 0 121.51381588003456 351.75910364322505 473.2729195232596 0 0 0 0 0 0 0 0 0 R 0.62926 - 2 + NaN NaN 106899.3 NaN 22673 6357 29031 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29038 113.97 NaN 36649 35 0 14623 0.411 -1 0 35 646.4377149495546 645.4304384829545 1 646.4363403320312 MULTI HCD FTMS 0 0 0 29037 23526.734375 0.39944981542128455 24 -0.171478271484375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106939.8 NaN 22674 6362 29037 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29043 114 NaN 39325 35 0 5840.6 0.411 + -1 VRMKALTVK 9 41 531.3295701252116 NaN 0 531.3291625976562 PEAK HCD FTMS 0 0 0 29042 28944.150390625 0.28262145086056917 159 -1.2340011596679688 1 Oxidation (M) _VRM(Oxidation (M))KALTVK_ REV__ENSG00000158717|ENST00000312838|RNF166 1.6526216038709556 0.28723846860855273 2 H 1 -1 4.6041 0 0 0.43408 0 0 465.3142172994481 455.2591646783813 920.5733819778294 0 0 0 0 0 0 0 0 0 H 0.43408 - 1 + NaN NaN 117690 NaN 22675 6366 29042 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29046 114.02 NaN 39890 35 0 24150 0.411 -1 0 24 602.4111262828866 601.4038498162865 1 602.4114990234375 MULTI HCD FTMS 0 0 0 29045 36245.69921875 0.24746151170199795 32 -0.22618865966796875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 111183.6 NaN 22676 6368 29045 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29050 114.04 NaN 27872 35 0 2253.3 0.411 + -1 RMRRLKFMK 9 39 649.368896484375 NaN 0 649.368896484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _RM(Oxidation (M))RRLKFM(Oxidation (M))K_ REV__ENST00000480568.1_1:147594391-147596156:-|nuORF 0.5247636613948944 0.2927039108006614 2 C 1 -1 0.9691 0 0 0.074735 0 0 672.8900083966813 517.7934054010374 1190.6834137977187 0 0 0 0 0 0 0 0 0 C 0.074735 - 1 + NaN NaN 99307.7 NaN 22677 6371 29049 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29052 114.05 NaN 22729 35 0 1614.5 0.411 + 3255 EDYTVSWYW 9 30 624.7623901367188 NaN 0 624.7623901367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _EDYTVSWYW_ ENSG00000129353|ENST00000335757|SLC44A2;ENST00000588393.5_1_19:10742408-10745595:+|nuORF;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;nc|ENSG00000129353|Q8IWA5-3|SLC44A2 0.5247636613948944 0.2927039108006614 2 E 1 8 0.088644 0 0 0.0071117 0 0 585.9850351544936 528.4182833307249 1114.4033184852185 0 0 0 0 0 0 0 0 0 + E 0.0071117 + + 1 + NaN NaN 103260.2 NaN 22678 6372 29051 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29055 114.06 NaN 31246 35 0 4576.2 0.412 + 34574 YPLPLQKE 8 42 494.27953848083934 NaN 0 494.27935791015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YPLPLQKE_ ENSG00000243710|ENST00000372492|CFAP57;nc|ENSG00000243710|Q96MR6-2|CFAP57 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104564.9 NaN 22679 6374 29054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29066 114.13 NaN 39158 35 0 6061.2 0.411 + 2880 DYSKVFNFI 9 36 566.7858276367188 NaN 0 566.7858276367188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _DYSKVFNFI_ tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1 4.3292370932331545 0.2742679634796037 2 S 1 8 6.9897 0 0 0.61771 0 0 277.10124980293114 764.3989962213499 1041.500246024281 0 0 0 0 0 0 0 0 0 + S 0.61771 + + 4 + NaN NaN 105060.8 NaN 22680 6384 29065 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29070 114.15 NaN 23435 35 0 3286 0.411 -1 0 35 633.3975744249565 632.3902979583564 1 633.3967895507812 MULTI HCD FTMS 0 0 0 29069 20776.794921875 0.16615573755384427 155 -1.2271270751953125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95727.9 NaN 22681 6387 29069 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29074 114.17 NaN 164170 35 0 49736 0.411 -1 0 33 579.2927178935503 578.2854414269502 1 579.293212890625 MULTI HCD FTMS 0 0 0 29073 30095.5625 0.42760321078258884 52 -0.386993408203125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 151461.9 NaN 22682 6390 29073 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29077 114.19 NaN 45282 35 0 14727 0.411 + 30563 VNLGNLPRS 9 34 485.27932727043986 NaN 0 484.83984375 PEAK HCD FTMS 0 0 0 29076 3600.937744140625 1 0 0 1 Unmodified _VNLGNLPRS_ REV__ENSG00000148848|ENST00000448723|ADAM12;REV__nc|ENSG00000148848|O43184|ADAM12 1.6526216038709556 0.28723846860855273 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96296.9 NaN 22683 6392 29076 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29079 114.19 NaN 23670 35 0 5405.5 0.411 -1 0 28 545.3450237753732 544.3377473087731 1 545.344970703125 MULTI HCD FTMS 0 0 0 29078 24314.876953125 0.09634158327113945 195 -1.5437774658203125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120489.5 NaN 22684 6393 29078 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29085 114.23 NaN 21273 35 0 2350.8 0.411 -1 HDECTPQQTM 10 37 624.2358401700754 NaN 0 624.2357788085938 PEAK HCD FTMS 0 0 0 29084 6882.85498046875 0.4978187719180525 -37 0.2635955810546875 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 2 K 1 -1 2.4743 0 0 0.1985 0 0 418.47886920558204 696.8445528619749 1115.323422067557 0 0 0 0 0 0 0 0 0 K 0.1985 - 2 + NaN NaN 104657.7 NaN 22685 6398 29084 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29087 114.24 NaN 38403 35 0 4157.1 0.411 + 32780 WRSWRGILLFF 11 48 494.2792176837564 1479.8158236514694 3 494.6131286621094 MULTI HCD FTMS 0 0 0 29086 6290.482421875 0.4783809479815767 9 -0.06855010986328125 1 Unmodified _WRSWRGILLFF_ REV__ENST00000428226.5_3_2:220092732-220094285:-|nuORF 0.09484139111097674 0.41850472438158626 2 R 1 -1 3.9794 0 0 0.26891 0 0 1004.720614955689 315.9750155084594 1320.6956304641485 0 0 0 0 0 0 0 0 0 R 0.26891 + + 8 + NaN NaN 101427.7 NaN 22686 6399 29086 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29089 114.24 NaN 15942 35 0 3096.6 0.411 + 4082 ESLVLLRRLL 10 21 606.3982491014308 NaN 0 606.7066040039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _ESLVLLRRLL_ ENSG00000175229|ENST00000312006|GAL3ST3 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100293.4 NaN 22687 6400 29088 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29095 114.28 NaN 22431 35 0 3460.6 0.411 + 16591 LVKIKLKQRR 10 34 641.4470170371965 NaN 0 641.1145629882812 PEAK HCD FTMS 0 0 0 29094 4576.46044921875 0.4417432033242332 -4 0.02793121337890625 1 Unmodified _LVKIKLKQRR_ ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111365.3 NaN 22688 6405 29094 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29097 114.29 NaN 33159 35 0 15395 0.412 -1 0 23 586.4160575284058 585.4087810618057 1 586.4158935546875 MULTI HCD FTMS 0 0 0 29096 26312.279296875 0.12447475683977526 70 -0.5324859619140625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 101864.7 NaN 22689 6406 29096 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29099 114.29 NaN 25712 35 0 5884.4 0.327 + 20661 PFKHLILII 9 12 547.3611290183422 NaN 0 547.345947265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PFKHLILII_ REV__ENSG00000059588|ENST00000040877|TARBP1;REV__ENST00000463793.1_1_1:234546169-234556549:-|nuORF;REV__TARBP1|p.Q1224E|1|0.18|ENSG00000059588|chr1:234418119-234418119|G/C|missense_variant 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104017.5 NaN 22690 6407 29098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29100 114.3 NaN 37676 35 0 10279 0.261 -1 0 15 484.3844866686447 483.3772102020447 1 484.3845520019531 MULTI HCD FTMS 0 0 0 29098 9087.9287109375 0.001705039335242856 248 -1.9745254516601562 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97771.8 NaN 22691 6407 29098 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29103 114.31 NaN 33897 35 0 10901 0.411 + 23262 RGRPPRLYL 9 23 564.3434646934155 NaN 0 564.3582153320312 PEAK HCD FTMS 0 0 0 29102 2153.41015625 0.7622812691885716 1 -0.0075225830078125 1 Unmodified _RGRPPRLYL_ REV__ENST00000446789.2_1_13:113621919-113623112:-|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100730.1 NaN 22692 6409 29102 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29107 114.33 NaN 16796 35 0 1688.8 0.411 -1 HDECTPQQTM 10 30 624.2358401700754 NaN 0 624.4324951171875 PEAK HCD FTMS 0 0 0 29106 7980.0576171875 0.5771765486991316 -23 0.16943359375 1 Acetyl (Protein N-term),Oxidation (M) _(Acetyl (Protein N-term))HDECTPQQTM(Oxidation (M))_ ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90252.2 NaN 22693 6412 29106 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29114 114.38 NaN 37551 35 0 15781 0.411 -1 0 24 558.3847863728105 557.3775099062104 1 558.38525390625 MULTI HCD FTMS 0 0 0 29113 28618.15234375 0.5511932638418876 10 -0.07391357421875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102125.2 NaN 22694 6418 29113 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29117 114.39 NaN 33126 35 0 4003.3 0.412 -1 CVSYFCFCA 9 29 550.2062664533248 NaN 0 550.2175903320312 PEAK HCD FTMS 0 0 0 29116 2907.73193359375 1 0 0 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))VSYFCFCA_ ENST00000397786.6_1_17:60032777-60033087:-|nuORF;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96999.3 NaN 22695 6420 29116 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29121 114.41 NaN 18140 35 0 2707.7 0.411 -1 0 27 633.3975744249565 632.3902979583564 1 633.3961791992188 MULTI HCD FTMS 0 0 0 29120 8908.23046875 0.0712407091373075 191 -1.5428543090820312 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95569.9 NaN 22696 6423 29120 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29123 114.42 NaN 23067 35 0 8184.6 0.411 -1 0 29 569.3896489116214 568.3823724450214 1 569.389892578125 MULTI HCD FTMS 0 0 0 29122 17165.626953125 0.317286380095235 -3 0.02198028564453125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100703.9 NaN 22697 6424 29122 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29127 114.44 NaN 61577 35 0 10325 0.411 + 20915 PKRKRSSRI 9 34 564.359092802646 NaN 0 563.912109375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _PKRKRSSRI_ ENST00000482439.6_1_12:72274268-72274346:+|nuORF 0.5247636613948944 0.2927039108006614 2 K 1 8 3.9794 0 0 0.35319 0 0 580.379366169942 415.19492517642817 995.5742913463703 0 0 0 0 0 0 0 0 0 + K 0.35319 + + 2 + NaN NaN 104711.2 NaN 22698 6427 29126 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29129 114.45 NaN 32840 35 0 7875.1 0.411 -1 0 32 484.3844866686447 483.3772102020447 1 484.38397216796875 MULTI HCD FTMS 0 0 0 29128 7536.88623046875 0.0014140392048557135 269 -2.140625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101045.3 NaN 22699 6428 29128 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29132 114.46 NaN 23897 35 0 4271.5 0.327 -1 0 21 646.4375594488838 645.4302829822838 1 646.4376831054688 MULTI HCD FTMS 0 0 0 29131 9162.5234375 0.47864621174918764 2 -0.01667022705078125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97268.7 NaN 22700 6430 29131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29133 114.47 NaN 19389 35 0 4983 0.261 -1 0 20 627.1509375171149 NaN 0 626.963623046875 PEAK HCD FTMS 0 0 0 29131 6432.6962890625 0.22475567887527323 84 -0.676666259765625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93531.9 NaN 22701 6430 29131 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29136 114.48 NaN 27320 35 0 4931.8 0.411 -1 0 26 511.38427834052095 510.37700187392096 1 511.38409423828125 MULTI HCD FTMS 0 0 0 29135 10790.037109375 0.037372765480966505 119 -0.9648056030273438 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 111025.4 NaN 22702 6432 29135 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29138 114.49 NaN 14486 35 0 2076.8 0.411 + -1 LLMKIIKQKK 10 28 629.9176635742188 NaN 0 629.9176635742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _LLM(Oxidation (M))KIIKQKK_ REV__ENSG00000056291|ENST00000308744|NPFFR2;REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF;REV__nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;REV__nc|ENSG00000056291|Q9Y5X5|NPFFR2;REV__NPFFR2|p.T494Pfs*15|1|0.33|ENSG00000056291|chr4:72147721-72147721|A/-|frameshift_variant 0.4007161486938917 0.3398413315442166 2 E 1 -1 4.6041 0 0 0.36633 0 0 574.8853084943374 549.8552950494749 1124.7406035438123 0 0 0 0 0 0 0 0 0 E 0.36633 - 1 + NaN NaN 114231.5 NaN 22703 6433 29137 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29142 114.51 NaN 18242 35 0 4208.9 0.411 -1 0 26 602.4109049421425 601.4036284755424 1 602.4117431640625 MULTI HCD FTMS 0 0 0 29141 10234.4658203125 0.341035914733187 -15 0.11330413818359375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97596.7 NaN 22704 6436 29141 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29145 114.53 NaN 53601 35 0 13002 0.411 -1 0 39 508.21166759730136 507.20439113070137 1 508.2115173339844 MULTI HCD FTMS 0 0 0 29144 24564.904296875 0.5429467432427533 -676 4.8386688232421875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 121511.2 NaN 22705 6438 29144 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29147 114.53 NaN 29996 35 0 10923 0.411 -1 0 31 586.4158858343133 585.4086093677132 1 586.41650390625 MULTI HCD FTMS 0 0 0 29146 17661.58984375 0.4617539732282051 -14 0.1063995361328125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105477 NaN 22706 6439 29146 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29149 114.54 NaN 31073 35 0 4881.9 0.411 + -1 CWGEHTYF 8 33 550.2174570196249 NaN 0 550.2174072265625 PEAK HCD FTMS 0 0 0 29148 8804.2568359375 0.5759372310143827 58 -0.45851898193359375 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))WGEHTYF_ REV__ENST00000381652.3_1_9:5127188-5127269:+|nuORF 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93412.2 NaN 22707 6440 29148 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29152 114.56 NaN 139570 35 0 45416 0.412 -1 0 32 579.2927178935503 578.2854414269502 1 579.2925415039062 MULTI HCD FTMS 0 0 0 29151 14940.181640625 0.21227281062470044 104 -0.8486709594726562 1 NaN NaN 2 C(Carbamidomethyl (C)) 1 -1 5.4846 0 0 0.94842 0 0 184.98317809862834 230.24823938541252 415.2314174840409 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.94842 - 1 + NaN NaN 142365 NaN 22708 6442 29151 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29157 114.59 NaN 30229 35 0 4422.3 0.411 -1 0 40 545.3450237753732 544.3377473087731 1 545.6821899414062 MULTI HCD FTMS 0 0 0 29156 8911.826171875 0.03531086934516725 248 -1.9803695678710938 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 93809.1 NaN 22709 6446 29156 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29159 114.59 NaN 38387 35 0 7983 0.411 -1 0 29 637.3857869424397 636.3785104758397 1 639.8790893554688 MULTI HCD FTMS 0 0 0 29158 11581.0908203125 0.7831546140764917 -7 0.0518798828125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112983 NaN 22710 6447 29158 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29169 114.66 NaN 34545 35 0 8974.6 0.411 -1 0 32 528.4107277552786 527.4034512886785 1 528.410400390625 MULTI HCD FTMS 0 0 0 29168 11167.88671875 0.01962195416168027 176 -1.4364852905273438 1 NaN NaN 2 V 1 -1 2.2185 0 0 0.42064 0 0 58.11989523574727 367.19660364322505 425.3164988789723 0 0 0 0 0 0 0 0 0 V 0.42064 - 1 + NaN NaN 101270.1 NaN 22711 6456 29168 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29176 114.7 NaN 25234 35 0 4705.1 0.327 -1 RVVKPKMK 8 21 501.3187824733246 NaN 0 500.8292236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _RVVKPKM(Oxidation (M))K_ ENST00000424137.2_1_20:34340744-34341539:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103728.1 NaN 22712 6462 29175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29177 114.71 NaN 40932 35 0 9670.9 0.261 + 16326 LRHRYRPK 8 16 563.3403394626406 NaN 0 563.3395385742188 PEAK HCD FTMS 0 0 0 29175 2770.708984375 0.2887414970174874 15 -0.12422943115234375 2 Unmodified _LRHRYRPK_ REV__ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;REV__ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;REV__ENSG00000085224|ENST00000373344|ATRX;REV__nc|ENSG00000085224|P46100-2|ATRX;REV__nc|ENSG00000085224|P46100-3|ATRX;REV__nc|ENSG00000085224|P46100-4|ATRX;REV__nc|ENSG00000085224|P46100-5|ATRX;REV__nc|ENSG00000085224|P46100-6|ATRX 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99910.7 NaN 22713 6462 29175 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29179 114.71 NaN 15821 35 0 2018.6 0.411 + 14747 LHTDKLKPLI 10 30 589.3711905223479 NaN 0 589.3716430664062 PEAK HCD FTMS 0 0 0 29178 6184.908203125 0.05425416446709302 183 -1.488494873046875 1 Unmodified _LHTDKLKPLI_ REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|97|2|sense 0.4007161486938917 0.3398413315442166 2 S 1 -1 2.2185 0 0 0.18853 0 0 577.9334688359082 508.7463472955688 1086.679816131477 0 0 0 0 0 0 0 0 0 S 0.18853 - 1 + NaN NaN 104625.6 NaN 22714 6463 29178 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29181 114.72 NaN 16687 35 0 4029.2 0.327 -1 MPTTMEDFEM 10 17 624.2357508909126 NaN 0 624.2352294921875 PEAK HCD FTMS 0 0 0 29180 6262.73876953125 0.5200838729784445 6 -0.0538330078125 1 Oxidation (M) _MPTTMEDFEM(Oxidation (M))_ ENSG00000186625|ENST00000367411|KATNA1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95086.8 NaN 22715 6464 29180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29182 114.72 NaN 31182 35 0 8327.9 0.264 + -1 MCFFLDKYMGG 11 18 456.86403222476395 NaN 0 456.8639221191406 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _MC(Carbamidomethyl (C))FFLDKYMGG_ REV__ENST00000561301.5_1_15:48444377-48451083:-|nuORF 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102334 NaN 22716 6464 29180 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29184 114.73 NaN 23840 35 0 4879 0.411 -1 0 31 484.3841725387928 NaN 0 484.3842468261719 PEAK HCD FTMS 0 0 0 29183 4501.4970703125 0.48776093356530953 8 -0.066375732421875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108957.9 NaN 22717 6465 29183 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29187 114.75 NaN 23052 35 0 4666.5 0.411 + 5445 FIFIHKKK 8 31 530.8368530273438 NaN 0 530.8368530273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _FIFIHKKK_ REV__ENST00000592022.1_1_19:20328009-20328081:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100722 NaN 22718 6467 29186 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29189 114.75 NaN 24127 35 0 6080.9 0.327 + 12181 KKLPNIKMR 9 15 564.3588713535532 NaN 0 564.3765258789062 PEAK HCD FTMS 0 0 0 29188 5220.3720703125 0.915190558661169 -2 0.014923095703125 1 Unmodified _KKLPNIKMR_ ENSG00000198498|ENST00000358572|TMA16;ENST00000503148.1_1_4:164438551-164440663:+|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118930 NaN 22719 6468 29188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29190 114.76 NaN 24791 35 0 6842.1 0.261 -1 0 18 630.442461233179 629.4351847665789 1 630.4427490234375 MULTI HCD FTMS 0 0 0 29188 6265.1484375 0.2918715329088803 18 -0.14658355712890625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85266.3 NaN 22720 6468 29188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29191 114.76 NaN 18375 35 0 4412.6 0.261 -1 MSRRVCWMI 9 18 627.7977905273438 NaN 0 627.7977905273438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))SRRVC(Carbamidomethyl (C))WMI_ ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93678.5 NaN 22721 6468 29188 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29193 114.77 NaN 19001 35 0 2246.8 0.411 + 23352 RKKKKKKKTI 10 24 643.4630773549198 NaN 0 643.4629516601562 PEAK HCD FTMS 0 0 0 29192 7021.05810546875 0.5798191725340966 -7 0.06327056884765625 1 Unmodified _RKKKKKKKTI_ ENST00000308713.9_3_16:29910378-29910510:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96212.6 NaN 22722 6469 29192 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29197 114.79 NaN 12692 35 0 1883.4 0.411 + -1 FGCFSTQCCAM 11 23 607.2097289873969 NaN 0 607.2098388671875 PEAK HCD FTMS 0 0 0 29196 7059.15087890625 0.35719819110294865 -428 3.2257156372070312 1 Oxidation (M) _FGCFSTQCCAM(Oxidation (M))_ REV__ENSG00000188581|ENST00000306271|KRTAP1-1 0.35063188157827746 0.3411255017974031 2 R 1 -1 3.4949 0 0 0.28826 0 0 420.76441539491253 632.5100191705686 1053.2744345654812 0 0 0 0 0 0 0 0 0 R 0.28826 - 1 + NaN NaN 96296.3 NaN 22723 6472 29196 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29199 114.8 NaN 30453 35 0 7075.9 0.411 -1 0 30 599.4368177703974 598.4295413037974 1 599.4359741210938 MULTI HCD FTMS 0 0 0 29198 11616.55078125 0.7159980832638975 -4 0.03041839599609375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 107368.1 NaN 22724 6473 29198 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29202 114.81 NaN 26056 35 0 8474.5 0.411 -1 0 29 572.4370306852995 NaN 0 572.4368896484375 PEAK HCD FTMS 0 0 0 29201 16429.796875 0.8246988403607592 4 -0.0303497314453125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92569.7 NaN 22725 6475 29201 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29205 114.83 NaN 21253 35 0 4668.9 0.411 -1 0 34 602.4109049421425 601.4036284755424 1 602.542724609375 MULTI HCD FTMS 0 0 0 29204 11029.388671875 0.36752457047591075 26 -0.214599609375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105711.8 NaN 22726 6477 29204 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29210 114.86 NaN 15427 35 0 3025.6 0.412 -1 CLLLLFWFF 9 22 629.8385620117188 NaN 0 629.8385620117188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLLLFWFF_ L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|333|3|anti-sense 0.6014990680409731 0.29233206172879045 2 G 1 -1 2.7642 0 0 0.21979 0 0 598.4023454084 599.2084444635374 1197.6107898719374 0 0 0 0 0 0 0 0 0 G 0.21979 - 1 + NaN NaN 107042.7 NaN 22727 6481 29209 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29213 114.88 NaN 41181 35 0 11921 0.411 -1 0 31 481.3371244794481 480.3298480128481 1 481.3368225097656 MULTI HCD FTMS 0 0 0 29212 20556.857421875 0.3227632573494795 31 -0.26413726806640625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112297.8 NaN 22728 6483 29212 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29217 114.9 NaN 31016 35 0 5533 0.411 + 14885 LKNKPLMRK 9 30 564.3574829101562 NaN 0 564.3574829101562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LKNKPLMRK_ REV__tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107202.1 NaN 22729 6486 29216 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29219 114.91 NaN 22114 35 0 3828.6 0.411 -1 0 33 602.4109049421425 601.4036284755424 1 602.4110107421875 MULTI HCD FTMS 0 0 0 29218 5582.18359375 0.1860111823642782 36 -0.315887451171875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 110817 NaN 22730 6487 29218 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29221 114.92 NaN 31384 35 0 4360.6 0.411 + 15007 LLLLLLKRK 9 33 555.4099594821373 NaN 0 555.4097900390625 PEAK HCD FTMS 0 0 0 29220 10532.0224609375 0.6922591855780329 20 -0.1685943603515625 1 Unmodified _LLLLLLKRK_ REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 125094.3 NaN 22731 6488 29220 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29223 114.92 NaN 46339 35 0 17342 0.411 -1 0 26 454.33728051507126 453.33000404847127 1 454.3370666503906 MULTI HCD FTMS 0 0 0 29222 20044.248046875 0.304605964410807 35 -0.30730438232421875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113305.9 NaN 22732 6489 29222 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29225 114.93 NaN 28259 35 0 3993.3 0.327 -1 0 28 421.3219608883482 NaN 0 421.3289489746094 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113972.6 NaN 22733 6490 29224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29226 114.94 NaN 26304 35 0 8786.4 0.261 + 5338 FFRLLLIAP 9 12 545.3449100017781 NaN 0 545.3449096679688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _FFRLLLIAP_ REV__ENSG00000132196|ENST00000254521|HSD17B7;REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF;REV__nc|ENSG00000132196|P56937-2|HSD17B7 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95860.7 NaN 22734 6490 29224 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29228 114.94 NaN 21866 35 0 4866.3 0.411 + 26305 SRRRLHRI 8 23 547.3446803192726 NaN 0 547.3323974609375 PEAK HCD FTMS 0 0 0 29227 1786.7010498046875 0.33755167173771 2 -0.0153656005859375 1 Unmodified _SRRRLHRI_ ENSG00000122304|ENST00000241808|PRM2;nc|ENSG00000122304|P04554-2|PRM2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111553.7 NaN 22735 6491 29227 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29231 114.96 NaN 24657 35 0 4899.9 0.412 -1 CFWEECPRKG 10 36 456.86423986474404 NaN 0 456.8638916015625 PEAK HCD FTMS 0 0 0 29230 6556.0830078125 0.946787804888712 1 -0.00782012939453125 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))FWEEC(Carbamidomethyl (C))PRKG_ ZIC4|p.Q181K|1|0.41|ENSG00000174963|chr3:147395999-147395999|G/T|missense_variant 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98192.2 NaN 22736 6493 29230 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29233 114.96 NaN 33185 35 0 10571 0.411 -1 0 18 514.3584864999458 513.3512100333458 1 514.35791015625 MULTI HCD FTMS 0 0 0 29232 9691.732421875 0.11393640569510395 38 -0.326751708984375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118212.2 NaN 22737 6494 29232 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29235 114.97 NaN 30190 35 0 5328.1 0.411 -1 0 34 525.3633653343226 524.3560888677225 1 525.3638916015625 MULTI HCD FTMS 0 0 0 29234 7330.10693359375 0.1303434527799791 47 -0.404693603515625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108263.1 NaN 22738 6495 29234 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29237 114.98 NaN 30261 35 0 5449.8 0.411 -1 WEMTSRCN 8 29 550.2174570196249 NaN 0 550.2172241210938 PEAK HCD FTMS 0 0 0 29236 9675.8544921875 0.6329534619187595 114 -0.9459686279296875 1 Carbamidomethyl (C),Oxidation (M) _WEM(Oxidation (M))TSRC(Carbamidomethyl (C))N_ ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113430.1 NaN 22739 6496 29236 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29239 114.99 NaN 34327 35 0 6346.3 0.327 -1 0 18 558.3846914121701 557.3774149455701 1 558.3837890625 MULTI HCD FTMS 0 0 0 29238 8070.28955078125 0.14568829984232334 46 -0.39608001708984375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108008.6 NaN 22740 6497 29238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29240 114.99 NaN 20182 35 0 5133.2 0.261 -1 MHCPQMEWE 9 19 624.2360551704115 NaN 0 624.2367553710938 PEAK HCD FTMS 0 0 0 29238 5576.4697265625 0.5784910093014562 -16 0.131591796875 2 Carbamidomethyl (C) _MHC(Carbamidomethyl (C))PQMEWE_ ENSG00000151136|ENST00000280758|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118273.6 NaN 22741 6497 29238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29241 115 NaN 18203 35 0 4598.1 0.261 -1 RRLRPWCR 8 13 600.3394165039062 NaN 0 600.3394165039062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C) _RRLRPWC(Carbamidomethyl (C))R_ ENSG00000164972|ENST00000297623|C9orf24;nc|ENSG00000164972|Q8NCR6-2|SPMIP6;nc|ENSG00000164972|Q8NCR6-4|SPMIP6;nc|ENSG00000164972|Q8NCR6-5|SPMIP6 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98071.5 NaN 22742 6497 29238 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29243 115 NaN 22018 35 0 1646.3 0.411 + 23031 RCREAFATKGE 11 27 634.3138480544281 NaN 0 634.3123779296875 PEAK HCD FTMS 0 0 0 29242 6095.619140625 0.9294979770631823 1 -0.00806427001953125 1 Unmodified _RCREAFATKGE_ ENSG00000218891|ENST00000325421|ZNF579 1.0714618166137932 0.3390807148598227 2 D 1 11 5.4846 0 0 0.43301 0 0 535.15405001335 613.3968599908811 1148.5509100042311 0 0 0 0 0 0 0 0 0 D 0.43301 - 1 + NaN NaN 108101.9 NaN 22743 6498 29242 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29245 115.01 NaN 27662 35 0 5022.7 0.411 -1 0 16 572.4369378150168 571.4296613484167 1 572.4368286132812 MULTI HCD FTMS 0 0 0 29244 6420.7314453125 0.16077239758348522 -56 0.44347381591796875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110442.9 NaN 22744 6499 29244 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29247 115.02 NaN 25763 35 0 3753.6 0.327 + 12215 KKVFKILL 8 23 494.8512878417969 NaN 0 494.8512878417969 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KKVFKILL_ ENST00000227758.6_3_11:102248859-102248973:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 85365.7 NaN 22745 6500 29246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29248 115.02 NaN 60915 35 0 17230 0.261 + 20868 PIIKQPKLW 9 25 561.854736328125 NaN 0 561.854736328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PIIKQPKLW_ REV__ENSG00000198924|ENST00000361384|DCLRE1A 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103731.2 NaN 22746 6500 29246 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29251 115.03 NaN 33014 35 0 5392.5 0.411 -1 0 27 558.3846914121701 557.3774149455701 1 558.3851928710938 MULTI HCD FTMS 0 0 0 29250 10522.119140625 0.18994977053674938 51 -0.42913055419921875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101722.6 NaN 22747 6502 29250 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29253 115.04 NaN 34789 35 0 8096.7 0.327 -1 HFRGHRCRAC 10 19 452.88069378432243 NaN 0 452.86981201171875 PEAK HCD FTMS 0 0 0 29252 4376.9599609375 0.4068851357430059 -34 0.2755584716796875 1 2 Carbamidomethyl (C) _HFRGHRC(Carbamidomethyl (C))RAC(Carbamidomethyl (C))_ ENST00000395057.5_2_3:51705404-51708292:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108189.8 NaN 22748 6503 29252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29254 115.05 NaN 36488 35 0 11067 0.261 + 30358 VLHGILLKK 9 22 510.8519994727519 NaN 0 510.8734436035156 PEAK HCD FTMS 0 0 0 29252 4357.49365234375 1 0 0 2 Unmodified _VLHGILLKK_ tr|U7T6Y3|U7T6Y3_FUSNUPeptidylprolylisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00051PE=4SV=1 0 0.29524684227089293 2 C(Carbamidomethyl (C)) 1 9 4.6041 0 0 0.45152 0 0 509.89206549648196 346.73105798892817 856.6231234854101 0 0 0 0 0 0 0 0 0 C(Carbamidomethyl (C)) 0.45152 - 1 + NaN NaN 102384.4 NaN 22749 6503 29252 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29256 115.05 NaN 39106 35 0 10971 0.327 -1 0 23 481.3371422588412 480.3298657922412 1 481.33721923828125 MULTI HCD FTMS 0 0 0 29255 12515.1533203125 0.2199624889405297 -28 0.23193359375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111615.5 NaN 22750 6504 29255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29257 115.06 NaN 24683 35 0 2082.2 0.261 + 9265 HPLTRHLHY 9 24 587.3166557818645 NaN 0 587.7775268554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _HPLTRHLHY_ chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96433.7 NaN 22751 6504 29255 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29260 115.07 NaN 17277 35 0 2087.8 0.411 + 30751 VPLKVIRLTV 10 23 569.3896228498917 NaN 0 569.3895263671875 PEAK HCD FTMS 0 0 0 29259 6267.15234375 0.6040266030710881 -4 0.034881591796875 1 Unmodified _VPLKVIRLTV_ ENSG00000171790|ENST00000302946|SLFNL1;nc|ENSG00000171790|Q499Z3-2|SLFNL1 0 0.34018428902965525 2 G 1 10 6.9897 0 0 0.61488 0 0 713.6642421824021 363.04709802799067 1076.7113402103928 0 0 0 0 0 0 0 0 0 G 0.61488 - 1 + NaN NaN 103832.1 NaN 22752 6506 29259 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29263 115.08 NaN 42254 35 0 8596.3 0.327 -1 0 28 437.3107108329835 436.3034343663835 1 437.310302734375 MULTI HCD FTMS 0 0 0 29262 13849.8935546875 0.2486418075309958 -24 0.198822021484375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 103585.9 NaN 22753 6508 29262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29264 115.09 NaN 19846 35 0 2884.4 0.261 -1 ACFCSCCLGL 10 18 624.2360551704115 NaN 0 624.23583984375 PEAK HCD FTMS 0 0 0 29262 6693.30859375 0.6943494780435892 -5 0.0421295166015625 2 4 Carbamidomethyl (C) _AC(Carbamidomethyl (C))FC(Carbamidomethyl (C))SC(Carbamidomethyl (C))C(Carbamidomethyl (C))LGL_ ENST00000296255.7_1_3:128369549-128369666:-|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92273.7 NaN 22754 6508 29262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29265 115.09 NaN 35871 35 0 6118.8 0.261 + 8676 HFIRQMFK 8 22 553.7998657226562 NaN 0 553.7998657226562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _HFIRQMFK_ REV__tr|U7SXQ0|U7SXQ0_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00917PE=4SV=1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99026.1 NaN 22755 6508 29262 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29267 115.1 NaN 20389 35 0 2081.2 0.411 + -1 VCRVMWEYI 9 18 628.3024291992188 NaN 0 628.3024291992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _VC(Carbamidomethyl (C))RVMWEYI_ REV__ENSG00000118689|ENST00000406360|FOXO3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 112292.7 NaN 22756 6509 29266 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29270 115.11 NaN 22260 35 0 4239.6 0.327 + 12696 KWNRRFWN 8 18 603.8173828125 NaN 0 603.8173828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KWNRRFWN_ ENST00000447643.1_1_7:44047097-44047145:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92063.4 NaN 22757 6511 29269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29271 115.12 NaN 33411 35 0 4397.6 0.261 + 16418 LSLAKKKKKK 10 22 586.4162005773355 NaN 0 586.4161987304688 PEAK HCD FTMS 0 0 0 29269 4811.89599609375 0.16257462032840367 -22 0.18917083740234375 2 Unmodified _LSLAKKKKKK_ ENST00000205636.3_1_3:32524128-32524239:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100841.5 NaN 22758 6511 29269 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29273 115.12 NaN 21609 35 0 4831.8 0.327 -1 0 19 511.3841247558594 NaN 0 511.3841247558594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99610.3 NaN 22759 6512 29272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29274 115.13 NaN 32332 35 0 11397 0.261 + 31196 VVKLLTKSL 9 21 500.8417195464715 NaN 0 500.84716796875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _VVKLLTKSL_ REV__tr|U7SRB6|U7SRB6_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01699PE=4SV=1 0 0.29524684227089293 2 {M(Oxidation (M))|F} 1 -1 5.4846 0 0 0.54864 0 0 481.849258329468 367.7566012018188 849.6058595312868 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.54864 - 3 + NaN NaN 93162.1 NaN 22760 6512 29272 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29276 115.13 NaN 30457 35 0 8958.4 0.327 -1 0 16 409.27561220035875 408.26833573375876 1 409.27947998046875 MULTI HCD FTMS 0 0 0 29275 2842.37890625 0.5060014961364874 11 -0.09877777099609375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104473.7 NaN 22761 6513 29275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29277 115.14 NaN 46843 35 0 10726 0.261 + 32615 WLKLLLRW 8 32 564.3591217889021 NaN 0 564.359375 PEAK HCD FTMS 0 0 0 29275 5170.57275390625 0.215416058689947 -18 0.15969085693359375 2 Unmodified _WLKLLLRW_ ENST00000592819.1_2_19:13010157-13010840:-|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104224.1 NaN 22762 6513 29275 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29280 115.15 NaN 26597 35 0 4685.3 0.327 + 17733 MDEPMFTQPL 10 20 604.7713623046875 NaN 0 604.7713623046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _MDEPMFTQPL_ ENSG00000105953|ENST00000222673|OGDH;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000105953|Q02218-2|OGDH;nc|ENSG00000197444|Q9ULD0-2|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant 1.4819007175156935 0.33891598740166873 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111860.6 NaN 22763 6515 29279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29281 115.15 NaN 41923 35 0 10940 0.262 -1 VHLLKKKL 8 30 510.85241521595395 NaN 0 510.9381408691406 PEAK HCD FTMS 0 0 0 29279 2036.1851806640625 0.33854194869313586 -1 0.0072479248046875 2 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VHLLKKKL_ ENSG00000255398|ENST00000528880|HCAR3;HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120766.7 NaN 22764 6515 29279 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29283 115.16 NaN 48901 35 0 7162.4 0.326 + 28428 TPILRRLKM 9 27 564.3591217889021 NaN 0 564.3588256835938 PEAK HCD FTMS 0 0 0 29282 6104.2001953125 0.2543127831506121 -15 0.1315155029296875 1 Unmodified _TPILRRLKM_ ENST00000589727.5_1_17:40613024-40622135:+|nuORF 0.5247636613948944 0.2927039108006614 2 E 1 9 4.6041 0 0 0.40863 0 0 689.5336294647199 305.0937899225219 994.6274193872418 0 0 0 0 0 0 0 0 0 E 0.40863 - 1 + NaN NaN 112963.3 NaN 22765 6516 29282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29284 115.16 NaN 29088 35 0 5278.6 0.264 -1 0 19 421.3156203206496 NaN 0 421.3291015625 PEAK HCD FTMS 0 0 0 29282 2156.147216796875 0.738122942108411 -1 0.00952911376953125 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114016.6 NaN 22766 6516 29282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29285 115.17 NaN 27893 35 0 3881.4 0.261 + 23027 RCIHSLEERC 10 27 623.2969970703125 NaN 0 623.2969970703125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Unmodified _RCIHSLEERC_ REV__ENST00000554096.2_1_14:91709294-91710286:+|nuORF 1.3295316138638542 0.339046394236575 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114661.2 NaN 22767 6516 29282 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29287 115.17 NaN 30611 35 0 6858.8 0.327 -1 0 24 525.3634224968177 524.3561460302177 1 525.363037109375 MULTI HCD FTMS 0 0 0 29286 11291.6259765625 0.22838046041161092 -15 0.13727569580078125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94178.2 NaN 22768 6517 29286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29288 115.18 NaN 42100 35 0 9001.3 0.261 + 21899 QDHWLPWL 8 26 547.7727865110373 NaN 0 547.8436279296875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _QDHWLPWL_ ENST00000445817.1_1_1:227618561-227618687:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108659.7 NaN 22769 6517 29286 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29290 115.18 NaN 32013 35 0 3936.8 0.411 + 12531 KSALFKRMI 9 35 547.3327444211902 NaN 0 547.3323364257812 PEAK HCD FTMS 0 0 0 29289 8057.73583984375 0.3720500889011215 -17 0.15445709228515625 1 Unmodified _KSALFKRMI_ REV__ENSG00000111581|ENST00000229179|NUP107;REV__nc|ENSG00000111581|P57740-2|NUP107;REV__nc|ENSG00000111581|P57740-3|NUP107 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103902.3 NaN 22770 6518 29289 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29292 115.19 NaN 22285 35 0 2183.2 0.412 + 33094 YDSIIVFYN 9 25 567.2794746053376 1132.544396277475 2 567.279052734375 MULTI HCD FTMS 0 0 0 29291 5199.41748046875 0.2211903148601058 -10 0.09209442138671875 1 Unmodified _YDSIIVFYN_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 10.073929032068715 0.27331982688540024 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 34.437 0 0 3.0407 0 0 0 764.4015184300719 764.4015184300719 34.43697499232712 0 0 0 0 1 1.3979400086720375 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.0407 + + 11 NaN NaN 100079.4 NaN 22771 6519 29291 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29294 115.2 NaN 55333 35 0 14978 0.327 + 10249 IIMFRLILLIL 11 25 453.30558678088676 NaN 0 453.3055725097656 PEAK HCD FTMS 0 0 0 29293 28281.201171875 0.46554839477157384 -13 0.12026214599609375 1 Unmodified _IIMFRLILLIL_ ENSG00000134249|ENST00000369400|ADAM30;nc|ENSG00000134249|Q9UKF2-2|ADAM30 0 0.34212014346876374 2 P 1 11 1.5938 0 0 0.17619 0 0 452.7250823979079 351.79673181705317 804.5218142149611 0 0 0 0 0 0 0 0 0 P 0.17619 - 1 + NaN NaN 108004.8 NaN 22772 6520 29293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29295 115.2 NaN 209920 35 0 65325 0.261 -1 0 25 597.3935358829975 596.3862594163975 1 597.3938598632812 MULTI HCD FTMS 0 0 0 29293 27882.51953125 0.5332587201566593 -10 0.0919342041015625 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 127935 NaN 22773 6520 29293 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29298 115.21 NaN 24906 35 0 6487.8 0.327 -1 0 11 533.1898863969151 532.182609930315 1 533.1911010742188 MULTI HCD FTMS 0 0 0 29297 10415.4833984375 0.5284522089499585 96 -0.7719802856445312 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106762 NaN 22774 6522 29297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29299 115.22 NaN 25802 35 0 3911.2 0.261 + 12159 KKKKKKRKM 9 20 601.9168090820312 NaN 0 601.9168090820312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _KKKKKKRKM_ ENSG00000088205|ENST00000263239|DDX18 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110250.2 NaN 22775 6522 29297 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29303 115.24 NaN 21916 35 0 3108.7 0.411 + 30389 VLLLLLLFFI 10 18 602.4110649132442 NaN 0 602.4112548828125 PEAK HCD FTMS 0 0 0 29302 10333.6962890625 0.6863535146048126 -11 0.09590911865234375 1 Unmodified _VLLLLLLFFI_ ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR;nc|ENSG00000110148|P32239-3|CCKBR 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106173.9 NaN 22776 6525 29302 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29305 115.24 NaN 52543 35 0 20417 0.327 -1 0 28 481.3371422588412 480.3298657922412 1 481.33673095703125 MULTI HCD FTMS 0 0 0 29304 31166.27734375 0.5477689134191855 -6 0.048095703125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108303.3 NaN 22777 6526 29304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29306 115.25 NaN 40149 35 0 7139.1 0.261 -1 0 30 511.38402620708075 NaN 0 511.3837585449219 PEAK HCD FTMS 0 0 0 29304 6706.69287109375 0.48649538822597677 -6 0.048095703125 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99015.4 NaN 22778 6526 29304 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29309 115.26 NaN 53250 35 0 18957 0.411 -1 0 30 572.4369378150168 571.4296613484167 1 572.4367065429688 MULTI HCD FTMS 0 0 0 29308 19009.455078125 0.4759887087158756 -27 0.2351837158203125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 128704 NaN 22779 6528 29308 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29313 115.28 NaN 28375 35 0 1851.5 0.411 + 12512 KRPNLRQRW 9 27 627.3727416992188 NaN 0 627.3727416992188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _KRPNLRQRW_ REV__ENST00000374864.8_3_20:32957204-32957252:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105324.5 NaN 22780 6531 29312 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29317 115.3 NaN 40970 35 0 6650.4 0.327 -1 PHIKLLLLM 9 25 547.3454065059287 NaN 0 547.3328247070312 PEAK HCD FTMS 0 0 0 29316 8644.8134765625 0.9846511993676725 5 -0.044708251953125 1 Oxidation (M) _PHIKLLLLM(Oxidation (M))_ ENST00000357430.7_1_2:223806358-223806715:+|nuORF 0.6014990680409731 0.29233206172879045 2 K 1 -1 5.0886 0 0 0.4657 0 0 546.8953285374449 414.65805994205317 961.5533884794982 0 0 0 0 0 0 0 0 0.2614393726401688 K 0.4657 + + 1 + NaN NaN 91205.9 NaN 22781 6534 29316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29318 115.31 NaN 44111 35 0 12122 0.262 -1 0 23 440.358250932007 NaN 0 440.3583679199219 PEAK HCD FTMS 0 0 0 29316 9566.2197265625 0.5413814493543696 -19 0.15615081787109375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115927.5 NaN 22782 6534 29316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29319 115.31 NaN 31668 35 0 3989 0.261 + 20988 PLLLLLLLRVP 11 24 630.4424093697944 NaN 0 630.4423217773438 PEAK HCD FTMS 0 0 0 29316 7746.15087890625 0.5700771021438105 2 -0.02046966552734375 3 Unmodified _PLLLLLLLRVP_ ENSG00000101955|ENST00000378533|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-5|SRPX 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105741.4 NaN 22783 6534 29316 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29321 115.32 NaN 45465 35 0 4755.9 0.411 -1 0 35 550.2162622647317 549.2089857981316 1 550.2178955078125 MULTI HCD FTMS 0 0 0 29320 8150.76025390625 0.4660428679689962 -212 1.6100540161132812 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 118767 NaN 22784 6535 29320 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29323 115.33 NaN 51568 35 0 11420 0.326 -1 0 18 570.1198408230981 569.1125643564981 1 570.1204223632812 MULTI HCD FTMS 0 0 0 29322 27312.810546875 0.6577495981771362 5 -0.04169464111328125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107914 NaN 22785 6536 29322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29324 115.33 NaN 41207 35 0 9783.4 0.263 -1 0 29 441.2973727279054 440.2900962613054 1 441.2975769042969 MULTI HCD FTMS 0 0 0 29322 14087.2734375 0.01648607335937892 403 -3.0835723876953125 2 NaN NaN 2 V 1 -1 11.783 0 0 2.6761 0 0 323.20949736169445 0 323.20949736169445 0 11.78273661756906 0 0 0 0 0 0 0 V 2.6761 - 1 + NaN NaN 97054.8 NaN 22786 6536 29322 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29327 115.34 NaN 43780 35 0 7416.2 0.411 -1 0 38 421.3157880844524 NaN 0 421.3287353515625 PEAK HCD FTMS 0 0 0 29326 8282.46875 0.8630679586358206 -13 0.10474395751953125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 124076.6 NaN 22787 6538 29326 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29329 115.35 NaN 70576 35 0 43245 0.327 + 30977 VRVVPVKKVP 10 23 560.8833618164062 NaN 0 560.8833618164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VRVVPVKKVP_ REV__ENSG00000009413|ENST00000368802|REV3L 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95334.7 NaN 22788 6539 29328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29330 115.35 NaN 21315 35 0 3416.9 0.261 + -1 YMKIRFFK 8 22 574.8202604565926 NaN 0 574.8198852539062 PEAK HCD FTMS 0 0 0 29328 3000.63134765625 0.39045226130653266 1 -0.0096588134765625 2 Oxidation (M) _YM(Oxidation (M))KIRFFK_ REV__ENSG00000073910|ENST00000542859|FRY;REV__FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;REV__FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100493.1 NaN 22789 6539 29328 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29332 115.36 NaN 122940 35 0 37143 0.411 -1 0 32 579.2927178935503 578.2854414269502 1 579.2935791015625 MULTI HCD FTMS 0 0 0 29331 12698.3876953125 0.1804209956294302 202 -1.5732955932617188 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 129037.7 NaN 22790 6540 29331 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29334 115.37 NaN 56062 35 0 24235 0.327 -1 0 25 481.3371422588412 480.3298657922412 1 481.3370361328125 MULTI HCD FTMS 0 0 0 29333 33186.97265625 0.5832840332864396 9 -0.07184600830078125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101135.9 NaN 22791 6541 29333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29335 115.37 NaN 42163 35 0 10518 0.261 + 28178 TKKNKKKLK 9 20 558.3849825957659 NaN 0 558.3844604492188 PEAK HCD FTMS 0 0 0 29333 18416.609375 0.61791234014188 7 -0.0544281005859375 2 Unmodified _TKKNKKKLK_ REV__ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;REV__ENSG00000176208|ENST00000321990|ATAD5;REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF;REV__nc|ENSG00000176208|Q96QE3-2|ATAD5 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98584.3 NaN 22792 6541 29333 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29338 115.38 NaN 20186 35 0 2482 0.411 -1 0 27 641.4832317479622 NaN 0 641.48291015625 PEAK HCD FTMS 0 0 0 29337 5866.607421875 0.5688603033363054 -7 0.05861663818359375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102693.4 NaN 22793 6543 29337 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29340 115.39 NaN 28553 35 0 4014.4 0.411 -1 0 33 511.38402620708075 NaN 0 511.3840637207031 PEAK HCD FTMS 0 0 0 29339 7760.802734375 0.5629592426213563 12 -0.09232330322265625 1 NaN NaN 2 S 1 -1 2.4743 0 0 0.24239 0 0 666.9435762405303 263.7636812799438 930.7072575204741 0 0 0 0 0 0 0 0 0 S 0.24239 - 1 + NaN NaN 93101.9 NaN 22794 6544 29339 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29343 115.41 NaN 38184 35 0 14358 0.411 -1 0 29 525.3634224968177 524.3561460302177 1 525.363525390625 MULTI HCD FTMS 0 0 0 29342 28029.978515625 0.5669244989174538 14 -0.1070404052734375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106525.6 NaN 22795 6546 29342 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29346 115.42 NaN 23630 35 0 4783.7 0.327 -1 KAQHRCMRR 9 21 621.8250353653664 NaN 0 621.77392578125 PEAK HCD FTMS 0 0 0 29345 2513.20166015625 1 0 0 1 Carbamidomethyl (C) _KAQHRC(Carbamidomethyl (C))MRR_ ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105252.4 NaN 22796 6548 29345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29347 115.43 NaN 53214 35 0 12485 0.263 + 23359 RKKRRRSQRR 10 25 476.30650313978475 NaN 0 476.3065185546875 PEAK HCD FTMS 0 0 0 29345 7010.6357421875 0.5120752881225119 -15 0.12328338623046875 2 Unmodified _RKKRRRSQRR_ ENSG00000186854|ENST00000409520|TRABD2A;nc|ENSG00000186854|Q86V40-2|TRABD2A 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103702.9 NaN 22797 6548 29345 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29349 115.43 NaN 22106 35 0 4918.3 0.411 + 4997 FCDWQQAWER 10 26 456.8643623678387 NaN 0 456.8638000488281 PEAK HCD FTMS 0 0 0 29348 3074.457275390625 0.4389637758887316 4 -0.0320587158203125 1 Unmodified _FCDWQQAWER_ ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1 0.15932191953741626 0.34004793154798674 2 C 1 9 1.9897 0 0 0.21824 0 0 446.40443166751487 359.2850435846313 805.6894752521462 0 0 0 0 0 0 0 0 0 + C 0.21824 + + 1 + NaN NaN 100500.2 NaN 22798 6549 29348 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29352 115.45 NaN 68626 35 0 16099 0.327 -1 0 31 570.1198408230981 569.1125643564981 1 570.1198120117188 MULTI HCD FTMS 0 0 0 29351 22781.98828125 0.5486379225583911 20 -0.15464019775390625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98555.5 NaN 22799 6551 29351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29353 115.45 NaN 20771 35 0 4139.9 0.261 + 33095 YDSIIVFYN 9 20 567.2794746053376 1132.544396277475 2 567.279541015625 MULTI HCD FTMS 0 0 0 29351 15731.181640625 0.6692259341132306 20 -0.15464019775390625 2 Unmodified _YDSIIVFYN_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 3.5964929083625545 0.32375295897743744 2 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 3 6 15.458 0 0 1.3649 0 0 767.4204579084 0 767.4204579084 0 15.45757490560675 0 0 0 0.5 0 0 0 S{[ME]|[YP]|[{M(Oxidation (M))|F}{I|L}]} 1.3649 - 3 NaN NaN 96598 NaN 22800 6551 29351 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29359 115.48 NaN 41398 35 0 15789 0.411 + 10273 IKGQKNRRK 9 25 564.3589696229276 NaN 0 564.35986328125 PEAK HCD FTMS 0 0 0 29358 13073.767578125 0.7741934849612873 2 -0.0148468017578125 1 Unmodified _IKGQKNRRK_ ENSG00000175820|ENST00000322527|CCDC168 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102831.4 NaN 22801 6556 29358 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29362 115.5 NaN 57749 35 0 13055 0.411 -1 0 30 579.2927178935503 578.2854414269502 1 580.2969360351562 MULTI HCD FTMS 0 0 0 29361 5717.44775390625 0.4494390634922 -11 0.08463287353515625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106118.6 NaN 22802 6558 29361 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29365 115.51 NaN 14919 35 0 2365.3 0.411 + -1 RRRCSKRYL 9 19 647.8677368164062 NaN 0 647.8677368164062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _RRRC(Carbamidomethyl (C))SKRYL_ REV__ENSG00000129990|ENST00000354308|SYT5 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102040.1 NaN 22803 6560 29364 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29368 115.53 NaN 10385 35 0 2439.6 0.411 + 15895 LPLLSLLKPLV 11 12 603.4151611328125 NaN 0 603.8004150390625 PEAK HCD FTMS 0 0 0 29367 1734.3582763671875 0.8127787232065894 -1 0.0072784423828125 1 Unmodified _LPLLSLLKPLV_ REV__ENSG00000138074|ENST00000310574|SLC5A6;REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 114155.9 NaN 22804 6562 29367 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29370 115.54 NaN 12363 35 0 4039.4 0.327 + 23409 RLIKKRLGPPL 11 9 645.9405517578125 NaN 0 645.9405517578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RLIKKRLGPPL_ REV__ENST00000370114.7_1_1:101361304-101361547:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104611.2 NaN 22805 6563 29369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29371 115.54 NaN 20838 35 0 4663.2 0.261 + 15066 LLVLLTIKIKL 11 23 633.9593505859375 NaN 0 633.9593505859375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _LLVLLTIKIKL_ tr|U7SKI7|U7SKI7_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02044PE=4SV=1 0 0.34212014346876374 2 H 1 11 5.4846 0 0 0.43325 0 0 647.5749146466811 478.25681482486567 1125.8317294715469 0 0 0 0 0 0 0 0 0 H 0.43325 - 2 + NaN NaN 83960.2 NaN 22806 6563 29369 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29377 115.58 NaN 14318 35 0 1831.2 0.411 + 33096 YDSIIVFYN 9 19 567.2794746053376 1132.544396277475 2 567.2794189453125 MULTI HCD FTMS 0 0 0 29376 5352.91650390625 0.22772037278532523 37 -0.3001861572265625 1 Unmodified _YDSIIVFYN_ ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant 10.073929032068715 0.27331982688540024 2 {[YD]|[{M(Oxidation (M))|F}M]}S 3 6 39.705 0 0 3.5058 0 0 0 764.3998011643581 764.3998011643581 29.247425010840047 0 0 0 0 0.9247425010840047 2 0 0 + {[YD]|[{M(Oxidation (M))|F}M]}S 3.5058 + + 11 + NaN NaN 106853.8 NaN 22807 6568 29376 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29380 115.59 NaN 43609 35 0 10912 0.411 -1 0 37 570.1198408230981 569.1125643564981 1 570.1197509765625 MULTI HCD FTMS 0 0 0 29379 15498.3759765625 0.37323330579571273 39 -0.31976318359375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97546.5 NaN 22808 6570 29379 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29383 115.61 NaN 36536 35 0 10779 0.327 + 12197 KKRKKLTLT 9 20 558.3849825957659 NaN 0 558.384765625 PEAK HCD FTMS 0 0 0 29382 18531.96875 0.6217828670077166 38 -0.3175201416015625 1 Unmodified _KKRKKLTLT_ ENSG00000088882|ENST00000380605|CPXM1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105197.7 NaN 22809 6572 29382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29384 115.61 NaN 14229 35 0 4631.4 0.261 -1 FYSLGLCFSM 10 14 620.7732543945312 NaN 0 620.7732543945312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C),Oxidation (M) _FYSLGLC(Carbamidomethyl (C))FSM(Oxidation (M))_ ENST00000510134.6_1_12:10746401-10750756:-|nuORF;ENST00000535939.5_2_12:10746401-10750756:-|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92361.7 NaN 22810 6572 29382 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29387 115.63 NaN 18762 35 0 3746.8 0.411 -1 0 17 511.38396821042153 NaN 0 511.3834533691406 PEAK HCD FTMS 0 0 0 29386 6121.740234375 0.576699459994734 19 -0.15576934814453125 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97297.7 NaN 22811 6574 29386 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29389 115.63 NaN 20358 35 0 5392.4 0.411 -1 ICWFPMVYYM 10 31 456.86403863223205 NaN 0 456.8636779785156 PEAK HCD FTMS 0 0 0 29388 5320.63037109375 0.552468717364541 -324 2.4179153442382812 1 Oxidation (M) _ICWFPMVYYM(Oxidation (M))_ ENSG00000162687|ENST00000294725|KCNT2 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109213.4 NaN 22812 6575 29388 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29393 115.66 NaN 37056 35 0 5845.5 0.411 + 12626 KVSKKGRD 8 47 459.2799066617304 NaN 0 459.2928771972656 PEAK HCD FTMS 0 0 0 29392 12749.078125 0.8969506693676068 1 -0.0078582763671875 1 Unmodified _KVSKKGRD_ REV__ENSG00000148843|ENST00000369797|PDCD11;REV__ENST00000471061.1_1_10:105163006-105164949:+|nuORF 2.302733041254933 0.38822285293237185 2 A 1 -1 3.768 0 0 0.4111 0 0 458.74553002092335 383.73557459049067 842.481104611414 0 0 0 0 0 0.3054621874040891 0 0 0 A 0.4111 - 1 + NaN NaN 115379.2 NaN 22813 6578 29392 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29397 115.68 NaN 37218 35 0 12466 0.411 -1 0 29 481.3371422588412 480.3298657922412 1 481.3370666503906 MULTI HCD FTMS 0 0 0 29396 21902.56640625 0.38495277665393274 49 -0.401092529296875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96231.9 NaN 22814 6581 29396 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29402 115.71 NaN 48785 35 0 18207 0.411 -1 0 25 454.33724374970404 453.32996728310405 1 454.3370361328125 MULTI HCD FTMS 0 0 0 29401 26694.41015625 0.40380362308118845 53 -0.4322662353515625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 1 NaN NaN 98204.7 NaN 22815 6585 29401 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29405 115.72 NaN 19061 35 0 6462.5 0.412 + 28429 TPILRRLKM 9 17 564.3589696229276 NaN 0 564.3579711914062 PEAK HCD FTMS 0 0 0 29404 5393.78662109375 0.31940559110972216 33 -0.27666473388671875 1 Unmodified _TPILRRLKM_ ENST00000589727.5_1_17:40613024-40622135:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94045 NaN 22816 6587 29404 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29407 115.74 NaN 23388 35 0 4713.5 0.327 -1 VVWCMKCEQQ 10 19 456.86403863223205 NaN 0 456.8653869628906 PEAK HCD FTMS 0 0 0 29406 3906.0146484375 0.405581811236733 -311 2.3445358276367188 1 Acetyl (Protein N-term),Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))VVWCM(Oxidation (M))KC(Carbamidomethyl (C))EQQ_ ENST00000461074.1_1_3:183097083-183118277:-|nuORF;ENST00000488149.5_1_3:183027559-183118319:-|nuORF 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93639.9 NaN 22817 6588 29406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29408 115.74 NaN 17989 35 0 5458 0.261 + 14882 LKLLKKLYLK 10 16 630.4424093697944 NaN 0 630.4425048828125 PEAK HCD FTMS 0 0 0 29406 3839.39599609375 0.2825599162283195 54 -0.43405914306640625 2 Unmodified _LKLLKKLYLK_ ENST00000589042.5_3_2:179517806-179527536:-|nuORF;ENST00000589042.5_3_2:179517806-179527536:-|nuORF;ENST00000589042.5_3_2:179517806-179527536:-|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96566.5 NaN 22818 6588 29406 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29410 115.75 NaN 30118 35 0 5716.8 0.327 -1 0 24 454.33724374970404 453.32996728310405 1 455.341064453125 MULTI HCD FTMS 0 0 0 29409 5477.37255859375 0.3524404399022713 38 -0.310638427734375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 92891.2 NaN 22819 6589 29409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29411 115.75 NaN 30400 35 0 8151.4 0.261 + 31139 VTVAGPSAPCR 11 16 529.2765108145938 NaN 0 529.3825073242188 PEAK HCD FTMS 0 0 0 29409 1795 0.8890638240112362 -1 0.00989532470703125 2 Unmodified _VTVAGPSAPCR_ REV__ENST00000507146.5_1_4:156680611-156696137:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109989.4 NaN 22820 6589 29409 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29413 115.76 NaN 32265 35 0 8923.8 0.327 + 30843 VQKKRKLK 8 19 514.3584804864588 NaN 0 514.358642578125 PEAK HCD FTMS 0 0 0 29412 13961.1669921875 0.34131586946592013 39 -0.3155975341796875 1 Unmodified _VQKKRKLK_ REV__ENSG00000113387|ENST00000265073|SUB1 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 108365.1 NaN 22821 6590 29412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29414 115.76 NaN 13575 35 0 2765.2 0.261 -1 LFCHQATRT 9 16 567.2794746053376 1132.544396277475 2 567.2789916992188 MULTI HCD FTMS 0 0 0 29412 1875.77392578125 0.07979798252563595 57 -0.45172882080078125 2 Carbamidomethyl (C) _LFC(Carbamidomethyl (C))HQATRT_ ENSG00000213088|ENST00000368122|ACKR1;nc|ENSG00000213088|Q16570-2|ACKR1 0.6014990680409731 0.3464572424761564 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101264.1 NaN 22822 6590 29412 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29418 115.78 NaN 35220 35 0 6753.8 0.327 + 30225 VIMLLLHI 8 21 476.30634214108187 NaN 0 476.7426452636719 PEAK HCD FTMS 0 0 0 29417 4562.72314453125 0.9547335980110144 2 -0.01792144775390625 1 Unmodified _VIMLLLHI_ ENST00000508878.5_1_5:127359968-127417754:-|nuORF 0.7936320650641473 0.38822285293237185 2 S 1 8 0.9691 0 0 0.10195 0 0 720.3341370636107 140.2112978570922 860.5454349207029 0 0 0 0 0 0 0 0 0 S 0.10195 - 1 + NaN NaN 93520.9 NaN 22823 6593 29417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29419 115.79 NaN 37267 35 0 11101 0.261 -1 0 27 511.38396821042153 NaN 0 511.38458251953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96797.3 NaN 22824 6593 29417 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29421 115.79 NaN 10073 35 0 1307.6 0.411 + -1 NEEEACWEM 9 19 607.2097289873969 NaN 0 607.209716796875 PEAK HCD FTMS 0 0 0 29420 8825.958984375 0.44659997187310957 -306 2.3259429931640625 1 Carbamidomethyl (C),Oxidation (M) _NEEEAC(Carbamidomethyl (C))WEM(Oxidation (M))_ REV__ENSG00000196233|ENST00000421806|LCOR 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89279.8 NaN 22825 6594 29420 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29425 115.81 NaN 18002 35 0 4527.6 0.411 -1 0 11 525.3634224968177 524.3561460302177 1 525.3629150390625 MULTI HCD FTMS 0 0 0 29424 10646.6630859375 0.21533566755227618 65 -0.5094833374023438 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93199.9 NaN 22826 6597 29424 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29427 115.82 NaN 26666 35 0 3739.7 0.327 + -1 GCCCNCCCC 9 21 570.1197189724886 NaN 0 570.11962890625 PEAK HCD FTMS 0 0 0 29426 4532.69091796875 0.44856078057235943 1 -0.00994873046875 1 4 Carbamidomethyl (C) _GC(Carbamidomethyl (C))C(Carbamidomethyl (C))C(Carbamidomethyl (C))NC(Carbamidomethyl (C))CCC_ REV__ENSG00000147570|ENST00000276570|DNAJC5B 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94614.8 NaN 22827 6598 29426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29428 115.83 NaN 13895 35 0 4841.1 0.261 + 28184 TKLLVKLLKF 10 13 601.9148559570312 NaN 0 601.9148559570312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _TKLLVKLLKF_ REV__ENST00000474953.5_1_1:235346012-235357339:-|nuORF 0 0.34018428902965525 2 {M(Oxidation (M))|F} 1 -1 3.9794 0 0 0.33112 0 0 583.1225113263687 468.5951326959594 1051.7176440223282 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.33112 + + 1 + NaN NaN 94529.5 NaN 22828 6598 29426 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29432 115.85 NaN 19436 35 0 4949 0.411 + 5648 FNFVKQRR 8 22 547.8156486567225 NaN 0 547.816162109375 PEAK HCD FTMS 0 0 0 29431 4424.63427734375 0.6182845280039366 9 -0.0789947509765625 1 Unmodified _FNFVKQRR_ DUSP2|p.D285N|1|0.24|ENSG00000158050|chr2:96143915-96143915|C/T|missense_variant 2.302733041254933 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96058.9 NaN 22829 6601 29431 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29435 115.86 NaN 30055 35 0 4629.7 0.411 -1 0 29 481.3371422588412 480.3298657922412 1 481.33685302734375 MULTI HCD FTMS 0 0 0 29434 7870.2529296875 0.13832514701963966 71 -0.5499649047851562 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106470.2 NaN 22830 6603 29434 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29438 115.88 NaN 9088 35 0 5610.3 0.327 + 31071 VTCQGSIPTEV 11 5 567.2788696289062 NaN 0 567.2788696289062 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VTCQGSIPTEV_ ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96789.2 NaN 22831 6605 29437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29439 115.88 NaN 21882 35 0 4327 0.261 + 16419 LSLAKKKKKK 10 23 586.4162005773355 NaN 0 586.4157104492188 PEAK HCD FTMS 0 0 0 29437 6340.375 0.2142157808900032 71 -0.55230712890625 2 Unmodified _LSLAKKKKKK_ ENST00000205636.3_1_3:32524128-32524239:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106379.5 NaN 22832 6605 29437 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29442 115.9 NaN 34450 35 0 7513.4 0.327 + 5043 FDLSYEERHI 10 19 436.8791491148648 NaN 0 436.8792419433594 PEAK HCD FTMS 0 0 0 29441 12227.6650390625 0.37577586066671154 266 -2.0181121826171875 1 Unmodified _FDLSYEERHI_ REV__VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant 0.13989180515190558 0.34006456103295546 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106290.4 NaN 22833 6607 29441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29443 115.9 NaN 11625 35 0 3744.3 0.261 -1 0 6 572.4369378150168 571.4296613484167 1 572.4375 MULTI HCD FTMS 0 0 0 29441 6324.88037109375 0.15837232725748657 52 -0.4063568115234375 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113642 NaN 22834 6607 29441 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29446 115.91 NaN 30952 35 0 7366.4 0.327 + 30374 VLKLLLLAL 9 18 498.36368835885264 NaN 0 498.3638610839844 PEAK HCD FTMS 0 0 0 29445 7356.12255859375 0.11879238028804623 56 -0.43285369873046875 1 Unmodified _VLKLLLLAL_ REV__nc|ENSG00000133731|P29218-2|IMPA1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109342.5 NaN 22835 6609 29445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29447 115.92 NaN 15753 35 0 6358.1 0.261 + -1 CDEDSEKESD 10 14 607.2097289873969 NaN 0 607.2095947265625 PEAK HCD FTMS 0 0 0 29445 7507.3056640625 0.37987515060388316 -291 2.2389602661132812 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))DEDSEKESD_ REV__ENSG00000102241|ENST00000218364|HTATSF1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96988 NaN 22836 6609 29445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29448 115.92 NaN 14372 35 0 4386.7 0.261 -1 LPLICGDLSM 10 15 567.7799072265625 NaN 0 567.7799072265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 3 Carbamidomethyl (C),Oxidation (M) _LPLIC(Carbamidomethyl (C))GDLSM(Oxidation (M))_ ENST00000306071.6_1_17:7358699-7359902:+|nuORF 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97550.8 NaN 22837 6609 29445 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29455 115.96 NaN 20542 35 0 4929.8 0.411 + 28179 TKKNKKKLK 9 17 558.3849825957659 NaN 0 558.385009765625 PEAK HCD FTMS 0 0 0 29454 6804.76806640625 0.22831293613381654 81 -0.61962890625 1 Unmodified _TKKNKKKLK_ REV__ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;REV__ENSG00000176208|ENST00000321990|ATAD5;REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF;REV__nc|ENSG00000176208|Q96QE3-2|ATAD5 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115992.7 NaN 22838 6615 29454 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29461 116 NaN 27729 35 0 5413.9 0.411 -1 0 25 481.3371422588412 480.3298657922412 1 481.3371887207031 MULTI HCD FTMS 0 0 0 29460 8981.91015625 0.1578632928293714 88 -0.679901123046875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90431.3 NaN 22839 6620 29460 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29463 116.01 NaN 24438 35 0 7080.3 0.327 + 15008 LLLLLLKRK 9 17 555.4102544339954 NaN 0 555.751953125 PEAK HCD FTMS 0 0 0 29462 1741.677734375 0.3474895252583773 1 -0.00994110107421875 1 Unmodified _LLLLLLKRK_ REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103103.6 NaN 22840 6621 29462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29464 116.01 NaN 12390 35 0 2068.9 0.261 + -1 WFLFRICII 9 13 634.3563842773438 NaN 0 634.3563842773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Carbamidomethyl (C) _WFLFRIC(Carbamidomethyl (C))II_ REV__ENSG00000114200|ENST00000264381|BCHE 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96005.9 NaN 22841 6621 29462 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29468 116.03 NaN 9625.3 35 0 2095.8 0.411 -1 0 18 599.4367487771012 598.4294723105012 1 599.4371948242188 MULTI HCD FTMS 0 0 0 29467 4821.537109375 0.08280427639192245 91 -0.69915771484375 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93895.9 NaN 22842 6624 29467 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29470 116.04 NaN 8534.1 35 0 2195.5 0.411 + 7935 GDQRQELAAF 10 18 567.7806396484375 NaN 0 567.7806396484375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _GDQRQELAAF_ SH3TC2|p.V1167A|1|0.17|ENSG00000169247|chr5:149007056-149007056|A/G|missense_variant 1.6526216038709556 0.33876987398426067 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99371.4 NaN 22843 6625 29469 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29472 116.05 NaN 8465.5 35 0 2012.3 0.411 + -1 LRWCCCRL 8 16 583.773681640625 NaN 0 583.773681640625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _LRWC(Carbamidomethyl (C))CC(Carbamidomethyl (C))RL_ REV__ENST00000417647.6_1_5:140027400-140027472:+|nuORF 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99351.3 NaN 22844 6626 29471 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29479 116.09 NaN 20986 35 0 5664.2 0.411 -1 0 22 526.4312610624962 NaN 0 526.395263671875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 G 1 -1 1.5938 0 0 0.15167 0 0 486.39137847089233 504.4022616022094 990.7936400731018 0 0 0 0 0 0 0 0 0 G 0.15167 - 1 + NaN NaN 91957.2 NaN 22845 6632 29478 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29481 116.1 NaN 14788 35 0 4280.4 0.411 -1 RLLRFSRM 8 14 547.8156456203711 NaN 0 547.8151245117188 PEAK HCD FTMS 0 0 0 29480 5061.9423828125 0.6148750191724773 -16 0.12387847900390625 1 Oxidation (M) _RLLRFSRM(Oxidation (M))_ ENSG00000198515|ENST00000514170|CNGA1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87216.2 NaN 22846 6633 29480 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29485 116.13 NaN 8217.1 35 0 2026.2 0.411 + 4088 ESPRPWQPH 9 17 567.2789064165937 NaN 0 567.279052734375 PEAK HCD FTMS 0 0 0 29484 3752.10546875 0.8624009033967273 -2 0.014862060546875 1 Unmodified _ESPRPWQPH_ ENST00000382888.3_1_4:1953834-1954747:+|nuORF 1.844237919475145 0.28630992268396543 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99350.3 NaN 22847 6636 29484 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29488 116.14 NaN 11596 35 0 2066.7 0.411 + 16420 LSLAKKKKKK 10 15 586.4158948042307 NaN 0 586.416259765625 PEAK HCD FTMS 0 0 0 29487 2332.036865234375 0.5255233048558192 1 -0.0079498291015625 1 Unmodified _LSLAKKKKKK_ ENST00000205636.3_1_3:32524128-32524239:-|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91216.5 NaN 22848 6638 29487 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29493 116.17 NaN 20071 35 0 5425.4 0.411 + 14269 LCRFWILA 8 22 511.2867126464844 NaN 0 511.2867126464844 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LCRFWILA_ chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22;L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|197|1|anti-sense 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94220.6 NaN 22849 6642 29492 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29499 116.21 NaN 17067 35 0 6207.5 0.411 -1 0 20 553.4317137728998 NaN 0 553.7730712890625 PEAK HCD FTMS 0 0 0 29498 2477.025634765625 1 0 0 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90754.4 NaN 22850 6647 29498 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29502 116.22 NaN 7876 35 0 1757.3 0.411 -1 LLKERQCQY 9 14 619.3189697265625 NaN 0 619.3189697265625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _LLKERQC(Carbamidomethyl (C))QY_ ENSG00000181626|ENST00000587848|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENST00000434304.2_1_22:17154630-17158220:-|nuORF;ENST00000457060.1_1_22:17151111-17156333:-|nuORF;nc|ENSG00000181626|A6NC57-2|ANKRD62 2.0597508629832335 0.2852655770354268 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94958.3 NaN 22851 6649 29501 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29506 116.25 NaN 27101 35 0 5449.8 0.411 + 8869 HMWHIAQRDY 10 26 452.8798181994002 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 29505 3036.4189453125 0.8284212568742461 -1 0.00734710693359375 1 Unmodified _HMWHIAQRDY_ ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-2|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-8|OGG1 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110593.6 NaN 22852 6652 29505 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29510 116.27 NaN 26606 35 0 5586.8 0.327 + 28234 TLHLKLRL 8 18 497.3321167963151 NaN 0 497.3319396972656 PEAK HCD FTMS 0 0 0 29509 6449.27294921875 0.1503451192838715 122 -0.9216156005859375 1 Unmodified _TLHLKLRL_ REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91259.7 NaN 22853 6655 29509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29511 116.27 NaN 27333 35 0 10217 0.261 + 20987 PLLLLLLLL 9 15 510.87451171875 NaN 0 510.87451171875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _PLLLLLLLL_ ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000001036|ENST00000002165|FUCA2;ENSG00000070031|ENST00000176195|SCT;ENSG00000109255|ENST00000264218|NMU;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000143126|ENST00000271332|CELSR2;ENSG00000143434|ENST00000368914|SEMA6C;ENSG00000149451|ENST00000356518|ADAM33;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000162337|ENST00000294304|LRP5;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000215644|ENST00000400723|GCGR;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000137161|Q9BT09-2|CNPY3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;nc|ENSG00000185896|P11279-2|LAMP1;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000290691|A6NGW2|STRCP1;REV__C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;REV__CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000087116|ENST00000251582|ADAMTS2;REV__ENSG00000109758|ENST00000382774|HGFAC;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000143126|ENST00000271332|CELSR2;REV__ENSG00000155093|ENST00000389418|PTPRN2;REV__ENSG00000159189|ENST00000374640|C1QC;REV__ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000167925|ENST00000587427|GHDC;REV__ENSG00000183971|ENST00000566435|NPW;REV__ENSG00000185245|ENST00000329125|GP1BA;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__ENSG00000283654|ENST00000637218|CIROP;REV__ENST00000367585.1_1_6:143823176-143832783:-|nuORF;REV__ENST00000369603.9_1_10:112063289-112064608:-|nuORF;REV__ENST00000396904.2_2_7:5097383-5112677:+|nuORF;REV__ENST00000498308.1_1_7:5111828-5112677:+|nuORF;REV__GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;REV__GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__nc|ENSG00000117899|Q14696-2|MESD;REV__nc|ENSG00000137161|Q9BT09-2|CNPY3;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000155093|Q92932-4|PTPRN2;REV__nc|ENSG00000167925|Q8N2G8-2|GHDC;REV__nc|ENSG00000167925|Q8N2G8-3|GHDC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86868.6 NaN 22854 6655 29509 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29525 116.37 NaN 21220 35 0 3963.3 0.411 + -1 PDVEIMWMCR 10 27 456.86403863223205 NaN 0 456.8639831542969 PEAK HCD FTMS 0 0 0 29524 7717.0478515625 0.8013012051271469 -232 1.8559951782226562 1 Carbamidomethyl (C),2 Oxidation (M) _PDVEIM(Oxidation (M))WM(Oxidation (M))C(Carbamidomethyl (C))R_ REV__CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;REV__CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;REV__CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;REV__ENSG00000164796|ENST00000297405|CSMD3;REV__nc|ENSG00000164796|Q7Z407-2|CSMD3;REV__nc|ENSG00000164796|Q7Z407-3|CSMD3;REV__nc|ENSG00000164796|Q7Z407-4|CSMD3;REV__nc|ENSG00000164796|Q7Z407-5|CSMD3 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100659.5 NaN 22855 6668 29524 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29532 116.41 NaN 13062 35 0 2084.9 0.411 + -1 YGEACKCMY 9 22 570.7123597731298 NaN 0 570.759033203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _YGEAC(Carbamidomethyl (C))KCM(Oxidation (M))Y_ REV__ENSG00000184347|ENST00000519560|SLIT3;REV__nc|ENSG00000184347|O75094-2|SLIT3;REV__nc|ENSG00000184347|O75094-3|SLIT3;REV__nc|ENSG00000184347|O75094-4|SLIT3 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96599.5 NaN 22856 6674 29531 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29539 116.46 NaN 47672 35 0 18315 0.411 + 19053 NEECDQNWY 9 27 400.8135986328125 NaN 0 400.8135986328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NEECDQNWY_ ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 109644.4 NaN 22857 6680 29538 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29542 116.48 NaN 25939 35 0 4769.3 0.411 -1 0 34 421.321851710685 NaN 0 421.3288879394531 PEAK HCD FTMS 0 0 0 29541 1178.236083984375 0.26974142678062524 4 -0.03018951416015625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 117735.4 NaN 22858 6682 29541 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29549 116.52 NaN 10946 35 0 2075.3 0.411 + 15044 LLRMANRLF 9 21 567.3344116210938 NaN 0 567.3344116210938 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LLRMANRLF_ ENSG00000124570|ENST00000380539|SERPINB6 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94013.1 NaN 22859 6688 29548 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29552 116.54 NaN 14059 35 0 5616.2 0.411 + 30965 VRRGPYLPH 9 16 547.8157081861492 NaN 0 547.8157958984375 PEAK HCD FTMS 0 0 0 29551 5267.75390625 0.5468808453923937 -183 1.4588394165039062 1 Unmodified _VRRGPYLPH_ REV__ENSG00000137221|ENST00000372449|TJAP1;REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF;REV__nc|ENSG00000137221|Q5JTD0-2|TJAP1;REV__nc|ENSG00000137221|Q5JTD0-4|TJAP1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98887.5 NaN 22860 6690 29551 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29554 116.54 NaN 21336 35 0 5772.5 0.411 + 30287 VKKKKKKRQRY 11 25 497.3320684919346 NaN 0 497.3325500488281 PEAK HCD FTMS 0 0 0 29553 6512.4970703125 0.9387551648766219 10 -0.08214569091796875 1 Unmodified _VKKKKKKRQRY_ ENST00000358951.6_1_1:220323782-220323881:-|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111701.2 NaN 22861 6691 29553 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29556 116.55 NaN 25722 35 0 7063.8 0.411 + 19233 NKLKIKRK 8 24 514.3584804864588 NaN 0 514.3585205078125 PEAK HCD FTMS 0 0 0 29555 6478.4638671875 0.15838235649426807 141 -1.0582656860351562 1 Unmodified _NKLKIKRK_ REV__tr|U7T4B6|U7T4B6_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00410PE=4SV=1 0.6903765706972694 0.38822285293237185 2 G 1 -1 4.6041 0 0 0.44844 0 0 724.4945355805363 242.1666201227172 966.6611557032535 0 0 0 0 0 0 0 0 0 G 0.44844 - 2 + NaN NaN 94195.4 NaN 22862 6692 29555 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29559 116.57 NaN 31067 35 0 5828.3 0.411 + 3725 EMDILQNI 8 23 488.2429868199645 NaN 0 488.2433776855469 PEAK HCD FTMS 0 0 0 29558 6889.79248046875 0.04032507573068081 334 -2.50732421875 1 Unmodified _EMDILQNI_ REV__ENSG00000149600|ENST00000278980|COMMD7;REV__ENST00000610160.1_1_20:31291624-31315937:-|nuORF;REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 2.577480529830294 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103336.1 NaN 22863 6694 29558 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29562 116.58 NaN 18731 35 0 5443.5 0.411 -1 TCVPLWKR 8 22 530.2926635742188 NaN 0 530.2926635742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _TC(Carbamidomethyl (C))VPLWKR_ chr17:41619671-41620536|360|10.24|0.11|6.57|-|1|None,KRT17|1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98198 NaN 22864 6696 29561 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29568 116.63 NaN 26359 35 0 4165.3 0.326 + 14603 LFQKYCQENPS 11 22 452.88008237937913 NaN 0 452.8699645996094 PEAK HCD FTMS 0 0 0 29567 3615.87548828125 0.8425717046001333 -2 0.01470947265625 1 Unmodified _LFQKYCQENPS_ ENSG00000180336|ENST00000409122|MEIOC;nc|ENSG00000180336|A2RUB1-1|MEIOC;nc|ENSG00000180336|A2RUB1-2|MEIOC;nc|ENSG00000180336|A2RUB1-5|MEIOC 0.09484139111097674 0.34185110575506755 2 K 1 10 2.4743 0 0 0.27378 0 0 563.6197706163771 209.00338159732658 772.6231522137036 0 0 0 0 0 0 0 0 0 + K 0.27378 + + 1 + NaN NaN 111333.3 NaN 22865 6701 29567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29569 116.63 NaN 31186 35 0 10601 0.261 -1 NDEKMNEVMNL 11 17 456.86403863223205 NaN 0 456.86383056640625 PEAK HCD FTMS 0 0 0 29567 7221.2646484375 0.7498214571992625 -199 1.5915451049804688 2 2 Oxidation (M) _NDEKM(Oxidation (M))NEVM(Oxidation (M))NL_ ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98454.8 NaN 22866 6701 29567 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29571 116.64 NaN 7375.7 35 0 2089.4 0.411 + 3206 EDEMSMKESN 10 15 600.2298583984375 NaN 0 600.2298583984375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _EDEMSMKESN_ REV__ENSG00000100722|ENST00000251038|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-11|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-2|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-3|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-4|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-5|ZC3H14;REV__nc|ENSG00000100722|Q6PJT7-9|ZC3H14 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96619 NaN 22867 6702 29570 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29583 116.72 NaN 11164 35 0 2267.9 0.411 + 10259 IIWYFMNF 8 22 567.2782592773438 NaN 0 567.2782592773438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _IIWYFMNF_ REV__ENSG00000145888|ENST00000274576|GLRA1;REV__nc|ENSG00000145888|P23415|GLRA1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100236.2 NaN 22868 6713 29582 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29586 116.73 NaN 20731 35 0 5091.4 0.411 + 28180 TKKNKKKLK 9 24 558.3846925828447 NaN 0 558.3847045898438 PEAK HCD FTMS 0 0 0 29585 2082.600341796875 0.3020788949879938 -14 0.106903076171875 1 Unmodified _TKKNKKKLK_ REV__ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;REV__ENSG00000176208|ENST00000321990|ATAD5;REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF;REV__nc|ENSG00000176208|Q96QE3-2|ATAD5 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 110850.7 NaN 22869 6715 29585 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29593 116.78 NaN 21972 35 0 6077.9 0.411 + 28235 TLHLKLRL 8 20 497.33209857886334 NaN 0 497.3323059082031 PEAK HCD FTMS 0 0 0 29592 4628.97998046875 0.4257802703392175 -6 0.0446929931640625 1 Unmodified _TLHLKLRL_ REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 116749.9 NaN 22870 6721 29592 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29606 116.87 NaN 9118 35 0 1773.1 0.411 -1 CSPCSATCEK 10 19 600.229812949236 NaN 0 600.2294311523438 PEAK HCD FTMS 0 0 0 29605 1520.9613037109375 0.33331179865152766 -16 0.11771392822265625 1 3 Carbamidomethyl (C) _C(Carbamidomethyl (C))SPC(Carbamidomethyl (C))SATC(Carbamidomethyl (C))EK_ ADAMTS17|p.W870C|1|0.37|ENSG00000140470|chr15:99997571-99997571|C/A|missense_variant 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92301.3 NaN 22871 6733 29605 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29620 116.96 NaN 9639.8 35 0 2144.4 0.411 + 14199 LAPQIILLIEL 11 16 618.4025268554688 NaN 0 618.4025268554688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LAPQIILLIEL_ ENST00000461177.1_1_9:107526521-107531179:+|nuORF 1.3295316138638542 0.3383486451652214 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99959.3 NaN 22872 6746 29619 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29624 116.98 NaN 8970.6 35 0 2086.4 0.411 -1 CEQAEYHMF 9 18 600.229812949236 NaN 0 600.2297973632812 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))CEQAEYHMF_ ENSG00000069424|ENST00000378083|KCNAB2;KCNAB2|p.Y270_Q271insH|1|0.17|ENSG00000069424|chr1:6096639-6096640|-/ACC|inframe_insertion;nc|ENSG00000069424|Q13303-2|KCNAB2;nc|ENSG00000069424|Q13303-4|KCNAB2;nc|ENSG00000069424|Q13303-5|KCNAB2;nc|ENSG00000069424|Q13303|KCNAB2 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97321.6 NaN 22873 6749 29623 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29651 117.18 NaN 12085 35 0 2368.2 0.411 -1 SCCETTCCHL 10 26 607.2097289873969 NaN 0 607.2096557617188 PEAK HCD FTMS 0 0 0 29650 11843.5 0.5992897515434953 -125 0.9438858032226562 1 2 Carbamidomethyl (C) _SCCETTC(Carbamidomethyl (C))C(Carbamidomethyl (C))HL_ KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84778.8 NaN 22874 6775 29650 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29655 117.2 NaN 20963 35 0 5711 0.411 -1 0 34 483.07586699222844 NaN 0 483.0754699707031 PEAK HCD FTMS 0 0 0 29654 8617.15625 0.674948223695664 63 -0.47592926025390625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100107 NaN 22875 6778 29654 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29661 117.24 NaN 12180 35 0 1710.1 0.411 + 30393 VLLVLEDEDP 10 28 571.3026123046875 NaN 0 571.3026123046875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VLLVLEDEDP_ ENSG00000240764|ENST00000252087|PCDHGC5;nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 102477.7 NaN 22876 6783 29660 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29663 117.24 NaN 8564.9 35 0 2521.2 0.411 -1 LYILVCTRDS 10 14 620.3224487304688 NaN 0 620.3224487304688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _LYILVC(Carbamidomethyl (C))TRDS_ ENSG00000154545|ENST00000471932|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENST00000479281.5_1_X:51931784-51932886:+|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4 0.45834013312273997 0.33979201340002624 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 103058.7 NaN 22877 6784 29662 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29666 117.26 NaN 13113 35 0 3759.2 0.411 -1 0 22 581.1027522489434 NaN 0 581.2998046875 PEAK HCD FTMS 0 0 0 29665 2566.647705078125 1 0 0 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98928.1 NaN 22878 6786 29665 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29676 117.33 NaN 34756 35 0 6038.1 0.411 -1 0 28 459.1713923196507 458.1641158530507 1 459.17193603515625 MULTI HCD FTMS 0 0 0 29675 17938.89453125 0.7958224992827844 72 -0.5421600341796875 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 2 NaN NaN 110336.9 NaN 22879 6795 29675 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29684 117.38 NaN 6526.5 35 0 2085.8 0.411 + 31262 VVTYFLAIFKG 11 10 629.3657814176192 NaN 0 629.7003784179688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VVTYFLAIFKG_ REV__ENSG00000196242|ENST00000641802|OR2C3;REV__ENSG00000204700|ENST00000641417|OR2J2;REV__ENSG00000204701|ENST00000641151|OR2J3;REV__ENSG00000204702|ENST00000641659|OR2J1;REV__nc|ENSG00000204700|O76002|OR2J2;REV__nc|ENSG00000204701|O76001|OR2J3 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93571 NaN 22880 6802 29683 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29695 117.45 NaN 17403 35 0 5650.8 0.411 + -1 RRKAKMQRAL 10 26 637.38567775296 NaN 0 637.3843994140625 PEAK HCD FTMS 0 0 0 29694 7762.228515625 0.7322934000449224 -33 0.2460784912109375 1 Oxidation (M) _RRKAKM(Oxidation (M))QRAL_ REV__ENSG00000142684|ENST00000374266|ZNF593 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100279.1 NaN 22881 6812 29694 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29704 117.51 NaN 17702 35 0 5713 0.411 + 28181 TKKNKKKLK 9 14 558.3841985418056 NaN 0 558.384521484375 PEAK HCD FTMS 0 0 0 29703 1980.869384765625 0.5922411084172543 1 -0.00794219970703125 1 Unmodified _TKKNKKKLK_ REV__ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;REV__ENSG00000176208|ENST00000321990|ATAD5;REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF;REV__nc|ENSG00000176208|Q96QE3-2|ATAD5 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94780.5 NaN 22882 6820 29703 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29712 117.56 NaN 19904 35 0 5774.8 0.411 + 30375 VLKLLLLAL 9 28 498.3635972600554 NaN 0 498.363525390625 PEAK HCD FTMS 0 0 0 29711 1984.046142578125 0.531498083497094 2 -0.0154571533203125 1 Unmodified _VLKLLLLAL_ REV__nc|ENSG00000133731|P29218-2|IMPA1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98667.3 NaN 22883 6827 29711 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29715 117.58 NaN 7931.4 35 0 1932 0.411 + 9562 HRMWGHTHC 9 11 582.7506713867188 NaN 0 582.7506713867188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _HRMWGHTHC_ ENST00000372406.5_1_9:132898816-132898981:+|nuORF 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 84060.3 NaN 22884 6829 29714 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29720 117.61 NaN 8500.3 35 0 2369.8 0.411 -1 0 17 583.953125 NaN 0 583.953125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95161.7 NaN 22885 6833 29719 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29722 117.62 NaN 8037.1 35 0 1796.9 0.411 + -1 MECSCLFFF 9 14 600.2298565541578 NaN 0 600.229248046875 PEAK HCD FTMS 0 0 0 29721 1735.8037109375 0.38105841902591936 -5 0.038116455078125 1 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))EC(Carbamidomethyl (C))SCLFFF_ REV__ENST00000301740.12_1_16:2820975-2821305:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 82815.8 NaN 22886 6834 29721 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29724 117.63 NaN 35164 35 0 5739.4 0.411 + -1 GSSHGAFC 8 35 404.1587557210244 NaN 0 404.14892578125 PEAK HCD FTMS 0 0 0 29723 1560.2760009765625 0.2888960095775347 25 -0.191253662109375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GSSHGAFC_ REV__ENST00000194155.6_2_5:140474277-140474457:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93704.8 NaN 22887 6835 29723 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29728 117.65 NaN 16465 35 0 4602.2 0.411 + 34057 YNGFALILAL 10 18 547.8157081861492 NaN 0 547.81591796875 PEAK HCD FTMS 0 0 0 29727 6627.1162109375 0.6880053587262501 -44 0.3295135498046875 1 Unmodified _YNGFALILAL_ REV__ENSG00000248905|ENST00000616417|FMN1;REV__ENST00000558711.1_2_15:33192152-33192383:-|nuORF;REV__nc|ENSG00000248905|Q68DA7-5|FMN1 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95766 NaN 22888 6838 29727 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29730 117.66 NaN 22039 35 0 4392.1 0.327 -1 0 20 557.09433827917 NaN 0 556.8136596679688 PEAK HCD FTMS 0 0 0 29729 3393.297119140625 0.9146437685657165 -2 0.01529693603515625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 89191.8 NaN 22889 6839 29729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29731 117.66 NaN 14603 35 0 4150.4 0.261 + 28090 THKFHRKCI 9 16 585.32177734375 NaN 0 585.32177734375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 Unmodified _THKFHRKCI_ ENSG00000163012|ENST00000295131|ZSWIM2 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93430.1 NaN 22890 6839 29729 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29733 117.67 NaN 21403 35 0 4053.2 0.411 -1 HIMVVIET 8 22 479.25820496053757 NaN 0 479.25830078125 PEAK HCD FTMS 0 0 0 29732 3479.046630859375 0.40226136991207717 -238 1.8116455078125 1 Oxidation (M) _HIM(Oxidation (M))VVIET_ ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95081 NaN 22891 6840 29732 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29737 117.69 NaN 12524 35 0 2307.7 0.411 + -1 EMESNVCHEP 10 18 624.236086095524 NaN 0 624.2357177734375 PEAK HCD FTMS 0 0 0 29736 11360.1015625 0.7130998272841934 278 -2.0780105590820312 1 Carbamidomethyl (C),Oxidation (M) _EM(Oxidation (M))ESNVC(Carbamidomethyl (C))HEP_ REV__ENSG00000139618|ENST00000380152|BRCA2 1.1933415558491238 0.33916295405077446 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99465.8 NaN 22892 6843 29736 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29739 117.7 NaN 20686 35 0 4033.7 0.411 + 14187 LALLLLKLV 9 26 498.36374783874277 NaN 0 498.3636169433594 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _LALLLLKLV_ nc|ENSG00000133731|P29218-2|IMPA1 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 101333.7 NaN 22893 6844 29738 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29752 117.79 NaN 16893 35 0 4042 0.411 + -1 EMDVLHYYQE 10 17 456.86403863223205 NaN 0 456.86431884765625 PEAK HCD FTMS 0 0 0 29751 5074.91015625 0.5269543097742689 -48 0.36293792724609375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))EMDVLHYYQE_ REV__ENSG00000123561|ENST00000372563|SERPINA7;REV__SERPINA7|p.M241I|1|0.45|ENSG00000123561|chrX:106035285-106035285|C/T|missense_variant 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92323.7 NaN 22894 6856 29751 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29756 117.81 NaN 18341 35 0 5772.4 0.411 -1 VKYWTTCPSNT 11 21 452.87970548498254 NaN 0 452.86993408203125 PEAK HCD FTMS 0 0 0 29755 3217.85302734375 0.8323921892471988 14 -0.10443878173828125 1 Carbamidomethyl (C) _VKYWTTC(Carbamidomethyl (C))PSNT_ ENSG00000120669|ENST00000379881|SOHLH2;nc|ENSG00000120669|Q9NX45-2|SOHLH2;nc|ENSG00000120669|Q9NX45-3|SOHLH2 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105970.5 NaN 22895 6859 29755 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29766 117.88 NaN 24858 35 0 5684.3 0.411 + 30844 VQKKRKLK 8 27 514.3584091813839 NaN 0 514.35791015625 PEAK HCD FTMS 0 0 0 29765 7084.00439453125 1 0 0 1 Unmodified _VQKKRKLK_ REV__ENSG00000113387|ENST00000265073|SUB1 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 119266.4 NaN 22896 6868 29765 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29775 117.94 NaN 22624 35 0 4901.3 0.411 -1 IALVPPCST 9 17 479.25820496053757 NaN 0 479.2585144042969 PEAK HCD FTMS 0 0 0 29774 5439.9912109375 0.6289936724075575 -205 1.5452423095703125 1 Carbamidomethyl (C) _IALVPPC(Carbamidomethyl (C))ST_ ENSG00000139132|ENST00000534526|FGD4;ENST00000550091.5_1_12:32552793-32734916:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 93594.5 NaN 22897 6876 29774 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29779 117.96 NaN 8289.2 35 0 2473 0.411 + -1 SCESHTMCEE 10 13 586.189083717101 NaN 0 586.1890869140625 PEAK HCD FTMS 0 0 0 29778 1778.821044921875 0.34300547712735346 1 -0.00795745849609375 1 Oxidation (M) _SCESHTM(Oxidation (M))CEE_ REV__ENST00000462844.5_1_9:91003431-91041304:+|nuORF 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100167.8 NaN 22898 6879 29778 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29788 118.02 NaN 12009 35 0 1974.7 0.411 -1 0 25 571.4822387695312 NaN 0 571.4822387695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98766.2 NaN 22899 6887 29787 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29790 118.03 NaN 33079 35 0 6976.1 0.411 -1 0 19 471.59529216266554 2352.940078480328 5 471.7950744628906 MULTI HCD FTMS 0 0 0 29789 8842.708984375 0.49683324793921063 -215 1.6206207275390625 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105835.4 NaN 22900 6888 29789 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29800 118.09 NaN 23332 35 0 5236 0.411 + -1 CKWMAQMLRT 10 21 452.8789381057218 NaN 0 452.87005615234375 PEAK HCD FTMS 0 0 0 29799 1890.9130859375 1 0 0 1 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))KWM(Oxidation (M))AQM(Oxidation (M))LRT_ REV__ENSG00000107745|ENST00000361114|MICU1;REV__nc|ENSG00000107745|Q9BPX6-3|MICU1;REV__nc|ENSG00000107745|Q9BPX6-4|MICU1;REV__nc|ENSG00000107745|Q9BPX6-5|MICU1;REV__nc|ENSG00000107745|Q9BPX6-6|MICU1 0.15932191953741626 0.34004793154798674 2 A 1 -1 0.088644 0 0 0.0098085 0 0 493.57857215695293 336.11130701236567 829.6898791693186 0 0 0 0 0 0 0 0 0 A 0.0098085 + + 1 + NaN NaN 96692.3 NaN 22901 6897 29799 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29803 118.11 NaN 21524 35 0 4702.6 0.411 + 23280 RHHLYRIG 8 25 526.2974853515625 NaN 0 526.2974853515625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _RHHLYRIG_ REV__ENSG00000132518|ENST00000254854|GUCY2D 0.6903765706972694 0.38822285293237185 2 Y 1 -1 5.4846 0 0 0.52205 0 0 542.7926185529312 341.6969088190063 884.4895273719376 0 0 0 0 0 0 0 0 0 Y 0.52205 + + 1 + NaN NaN 96498.3 NaN 22902 6899 29802 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29808 118.14 NaN 9478.8 35 0 2433.2 0.411 + -1 ICLVPMSCGCC 11 17 601.2313232421875 NaN 0 601.2313232421875 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C),Oxidation (M) _IC(Carbamidomethyl (C))LVPM(Oxidation (M))SCGCC_ REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7 0.35063188157827746 0.3411255017974031 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91236.1 NaN 22903 6903 29807 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29815 118.19 NaN 13635 35 0 2457.2 0.411 -1 WNGCMQCYL 9 20 624.236086095524 NaN 0 624.237060546875 PEAK HCD FTMS 0 0 0 29814 9546.322265625 0.5992447093332435 344 NaN 1 2 Carbamidomethyl (C),Oxidation (M) _WNGC(Carbamidomethyl (C))M(Oxidation (M))QC(Carbamidomethyl (C))YL_ nc|ENSG00000269565|Q8NGA4|GPR32P1 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94756 NaN 22904 6909 29814 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29826 118.26 NaN 34594 35 0 6499.2 0.411 -1 0 29 471.59529216266554 2352.940078480328 5 471.7958679199219 MULTI HCD FTMS 0 0 0 29825 12206.5 0.6858299930130086 -184 1.3786087036132812 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 105482.8 NaN 22905 6919 29825 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29840 118.36 NaN 23619 35 0 4776.7 0.411 -1 LIVKCPNE 8 26 479.25820496053757 NaN 0 479.25811767578125 PEAK HCD FTMS 0 0 0 29839 5333.47119140625 0.6166773991505021 -151 1.13446044921875 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))LIVKCPNE_ ENST00000429404.1_1_10:60897246-60897555:-|nuORF 0.6014990680409731 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 120675.5 NaN 22906 6932 29839 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29845 118.39 NaN 5990.1 35 0 2030.6 0.411 + -1 TTTTEMDILE 10 11 585.2658081054688 NaN 0 585.2658081054688 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Oxidation (M) _TTTTEM(Oxidation (M))DILE_ REV__ENSG00000169116|ENST00000307428|PARM1 0 0.34018428902965525 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92551.7 NaN 22907 6936 29844 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29849 118.41 NaN 18728 35 0 6141.8 0.327 -1 CYRACFRQCV 10 14 454.86707798053027 NaN 0 454.8670654296875 PEAK HCD FTMS 0 0 0 29848 11997.189453125 0.5985043046087248 342 NaN 1 2 Carbamidomethyl (C) _CYRAC(Carbamidomethyl (C))FRQC(Carbamidomethyl (C))V_ ENSG00000175121|ENST00000372789|WFDC5;nc|ENSG00000175121|Q8TCV5|WFDC5 0.15932191953741626 0.34004793154798674 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 106694.5 NaN 22908 6939 29848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29850 118.41 NaN 12152 35 0 4710.9 0.261 -1 WGKWRCLC 8 10 583.2734985351562 NaN 0 583.2734985351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 2 Carbamidomethyl (C) _WGKWRC(Carbamidomethyl (C))LC(Carbamidomethyl (C))_ nc|ENSG00000284491|A0A1W2PP97|THSD8 0 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94208.3 NaN 22909 6939 29848 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29855 118.44 NaN 8814 35 0 1881.5 0.411 + -1 FTYYCNNW 8 18 584.2301635742188 NaN 0 584.2301635742188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _FTYYC(Carbamidomethyl (C))NNW_ REV__ENSG00000067704|ENST00000366922|IARS2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 86807.1 NaN 22910 6943 29854 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29857 118.45 NaN 16353 35 0 5531.4 0.411 -1 0 17 526.3934936523438 NaN 0 526.3934936523438 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95249.7 NaN 22911 6944 29856 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29859 118.46 NaN 35976 35 0 8388.1 0.411 -1 0 25 471.59529216266554 2352.940078480328 5 471.7955322265625 MULTI HCD FTMS 0 0 0 29858 12531.2255859375 0.7040749073074142 -158 1.189361572265625 1 NaN NaN 2 {M(Oxidation (M))|F} 1 -1 0.71334 0 0 0.030317 0 0 2057.4670082672405 145.38424097232658 2202.851249239567 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.030317 - 1 + NaN NaN 93521.6 NaN 22912 6945 29858 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29867 118.51 NaN 18160 35 0 6027.1 0.411 -1 0 12 562.0474964355194 NaN 0 562.0471801757812 PEAK HCD FTMS 0 0 0 29866 2086.350341796875 0.22200952539994076 150 -1.1184463500976562 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 97424.5 NaN 22913 6952 29866 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29887 118.65 NaN 9053 35 0 2500 0.411 + 19333 NPCIENVVKM 10 13 573.7855224609375 NaN 0 573.7855224609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _NPCIENVVKM_ REV__CPXM2|p.M334I|1|0.14|ENSG00000121898|chr10:123771016-123771016|C/T|missense_variant 0.35063188157827746 0.339884196735365 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 92563 NaN 22914 6971 29886 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29894 118.69 NaN 15805 35 0 4924.5 0.411 -1 0 16 543.1176293152056 NaN 0 542.7786865234375 PEAK HCD FTMS 0 0 0 29893 4320.396484375 1 0 0 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 95398.7 NaN 22915 6977 29893 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29900 118.73 NaN 16119 35 0 6154.8 0.411 + 35467 YYFALLWL 8 18 544.792236328125 NaN 0 544.792236328125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _YYFALLWL_ REV__ENSG00000158169|ENST00000289081|FANCC;REV__ENST00000477942.5_1_9:97871961-97897765:-|nuORF;REV__ENST00000480712.5_1_9:97869762-97897630:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87883.5 NaN 22916 6982 29899 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29912 118.81 NaN 17754 35 0 4267.7 0.411 -1 NDEKMNEVMNL 11 20 456.86403863223205 NaN 0 456.8638916015625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _NDEKM(Oxidation (M))NEVM(Oxidation (M))NL_ ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 87642.5 NaN 22917 6993 29911 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29926 118.91 NaN 9701 35 0 1727.5 0.411 + -1 GCCCCCCGTCM 11 21 629.6368408203125 NaN 0 629.6368408203125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term),2 Carbamidomethyl (C),Oxidation (M) _(Acetyl (Protein N-term))GC(Carbamidomethyl (C))C(Carbamidomethyl (C))CCCCGTCM(Oxidation (M))_ REV__ENST00000379661.7_1_16:57770947-57770980:+|nuORF;REV__ENST00000566726.5_1_16:57770947-57775680:+|nuORF 0 0.34212014346876374 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 99712.3 NaN 22918 7006 29925 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29929 118.93 NaN 35444 35 0 4976.1 0.411 + -1 GSSHGAFC 8 34 404.15879368100394 NaN 0 404.1492614746094 PEAK HCD FTMS 0 0 0 29928 967.3660888671875 0.20476361135169885 3 -0.022796630859375 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))GSSHGAFC_ REV__ENST00000194155.6_2_5:140474277-140474457:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 113412.3 NaN 22919 7008 29928 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29960 119.15 NaN 14708 35 0 5642.2 0.411 + 28186 TKLTLWYIG 9 20 547.8157081861492 NaN 0 547.8160400390625 PEAK HCD FTMS 0 0 0 29959 4975.44384765625 0.5165341787095057 150 NaN 1 Unmodified _TKLTLWYIG_ REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 90300.4 NaN 22920 7038 29959 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29962 119.16 NaN 10562 35 0 2491.3 0.411 -1 CWCLEFWGV 9 16 628.7653198242188 NaN 0 628.7653198242188 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))WC(Carbamidomethyl (C))LEFWGV_ LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|19|2|sense 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91212.5 NaN 22921 7039 29961 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29965 119.17 NaN 18615 35 0 5819.5 0.411 + 18072 MMKMIIFL 8 25 513.7813110351562 NaN 0 513.7813110351562 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _MMKMIIFL_ ENST00000429751.6_1_16:15178517-15179525:-|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 91416 NaN 22922 7041 29964 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29971 119.21 NaN 22017 35 0 4009.5 0.411 + 8685 HFRNDRRK 8 29 564.8104443946481 NaN 0 564.8109130859375 PEAK HCD FTMS 0 0 0 29970 1624.812255859375 0.5012112246932889 1 -0.0079498291015625 1 Unmodified _HFRNDRRK_ REV__ENSG00000077684|ENST00000226319|JADE1;REV__nc|ENSG00000077684|Q6IE81-2|JADE1 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104946.8 NaN 22923 7046 29970 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29974 119.22 NaN 21757 35 0 5335.6 0.411 -1 WDMEELSWKE 10 32 456.86403863223205 NaN 0 456.86407470703125 PEAK HCD FTMS 0 0 0 29973 5811.8955078125 0.6034793309646604 143 NaN 1 Oxidation (M) _WDM(Oxidation (M))EELSWKE_ ENSG00000171804|ENST00000447313|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;nc|ENSG00000171804|Q6ZQQ6|WDR87 0.15932191953741626 0.34004793154798674 2 {I|L} 1 -1 6.9897 0 0 0.76666 0 0 147.94199220411411 647.6595553033811 795.6015475074953 0 0 0 0 0 0 0 0 0 {I|L} 0.76666 + + 1 + NaN NaN 89350.6 NaN 22924 7048 29973 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29980 119.26 NaN 14182 35 0 6134.4 0.411 + 30376 VLKLLLLAL 9 16 498.36370849609375 NaN 0 498.36370849609375 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Unmodified _VLKLLLLAL_ REV__nc|ENSG00000133731|P29218-2|IMPA1 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 94225.3 NaN 22925 7053 29979 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29986 119.3 NaN 21264 35 0 3959.6 0.411 + -1 CCWRRWPQWC 10 21 494.2131042480469 NaN 0 494.2131042480469 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _CCWRRWPQWC(Carbamidomethyl (C))_ REV__ENST00000315579.9_1_12:6626009-6626543:+|nuORF 0.15932191953741626 0.34004793154798674 2 {M(Oxidation (M))|F} 1 -1 0.48455 0 0 0.049123 0 0 597.7678004865251 238.56124292545158 836.3290434119766 0 0 0 0 0 0 0 0 0 {M(Oxidation (M))|F} 0.049123 - 1 + NaN NaN 118931.8 NaN 22926 7058 29985 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 29992 119.34 NaN 35548 35 0 8132.6 0.411 -1 0 21 471.59529216266554 2352.940078480328 5 471.7950134277344 MULTI HCD FTMS 0 0 0 29991 14328.4453125 0.805052844677766 -40 0.29885101318359375 1 NaN NaN 2 C 1 -1 3.0989 0 0 0.13171 0 0 1909.857297573881 337.0555513971313 2246.9128489710124 0 0 0 0 0 0 0 0 0 C 0.13171 - 2 + NaN NaN 93745.1 NaN 22927 7063 29991 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30000 119.39 NaN 20613 35 0 4771.9 0.411 + 10825 ITHYYIETSDD 11 29 452.86995507427713 NaN 0 452.8698425292969 PEAK HCD FTMS 0 0 0 29999 12990.267578125 0.4685347425266927 473 NaN 1 Unmodified _ITHYYIETSDD_ ENSG00000151553|ENST00000369248|FHIP2A;nc|ENSG00000151553|Q5W0V3-2|FHIP2A 0.09484139111097674 0.34185110575506755 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98166.7 NaN 22928 7070 29999 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30007 119.43 NaN 19036 35 0 4765 0.327 -1 TKKLKKMDS 9 13 547.8157081861492 NaN 0 547.8161010742188 PEAK HCD FTMS 0 0 0 30006 2095.4501953125 0.2175427316242914 186 NaN 1 Oxidation (M) _TKKLKKM(Oxidation (M))DS_ ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant 0 0.29524684227089293 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 107893.7 NaN 22929 7076 30006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30008 119.44 NaN 24306 35 0 9613.2 0.261 -1 0 9 557.09423828125 NaN 0 557.09423828125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 2 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 115292.2 NaN 22930 7076 30006 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30025 119.55 NaN 23353 35 0 5556.2 0.411 + 23052 RDTPVQNK 8 29 479.25820496053757 NaN 0 479.2582702636719 PEAK HCD FTMS 0 0 0 30024 4064.1416015625 0.4699124046398204 6 -0.04488372802734375 1 Unmodified _RDTPVQNK_ ENSG00000101224|ENST00000245960|CDC25B;ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF;nc|ENSG00000101224|P30305-2|CDC25B;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B 0.6903765706972694 0.38822285293237185 2 D 1 7 5.4846 0 0 0.5734 0 0 363.74692642322515 474.7018221490844 838.4487485723096 0 0 0 0 0 0 0 0 0 + D 0.5734 + + 1 + NaN NaN 119433.5 NaN 22931 7092 30024 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30055 119.77 NaN 13680 35 0 1829.2 0.411 -1 GMPQCFGYQC 10 23 624.236086095524 NaN 0 624.236083984375 PEAK HCD FTMS 0 0 0 30054 10746.8310546875 0.6746034202940306 556 NaN 1 2 Carbamidomethyl (C) _GMPQC(Carbamidomethyl (C))FGYQC(Carbamidomethyl (C))_ ENST00000257745.8_1_7:104654834-104681400:+|nuORF;ENST00000311117.7_1_7:104681304-104681400:+|nuORF 0.4007161486938917 0.3398413315442166 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96819.1 NaN 22932 7121 30054 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30060 119.8 NaN 16715 35 0 4209.4 0.411 -1 KKYEMMKE 8 15 559.764892578125 NaN 0 559.764892578125 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 2 Oxidation (M) _KKYEM(Oxidation (M))M(Oxidation (M))KE_ ENSG00000070081|ENST00000529010|NUCB2;nc|ENSG00000070081|P80303-2|NUCB2 0.6903765706972694 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 104771.8 NaN 22933 7125 30059 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30062 119.81 NaN 14289 35 0 2909.7 0.411 + -1 MMMLMDHSE 9 19 570.7127530880231 NaN 0 570.7127075195312 PEAK HCD FTMS 0 0 0 30061 3474.36181640625 0.5167846413094902 58 NaN 1 Oxidation (M) _M(Oxidation (M))MMLMDHSE_ REV__ENSG00000186417|ENST00000335449|GLDN;REV__ENST00000558286.5_1_15:51634073-51676155:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 88920.5 NaN 22934 7126 30061 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30072 119.87 NaN 21959 35 0 6082.6 0.411 -1 IALVPPCST 9 28 479.25820496053757 NaN 0 479.2583312988281 PEAK HCD FTMS 0 0 0 30071 6806.10302734375 0.7869490173708158 49 NaN 1 Carbamidomethyl (C) _IALVPPC(Carbamidomethyl (C))ST_ ENSG00000139132|ENST00000534526|FGD4;ENST00000550091.5_1_12:32552793-32734916:+|nuORF 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 98969.3 NaN 22935 7135 30071 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30075 119.89 NaN 13837 35 0 2580.2 0.411 + -1 ATSGYYFH 8 17 494.21246337890625 NaN 0 494.21246337890625 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Acetyl (Protein N-term) _(Acetyl (Protein N-term))ATSGYYFH_ REV__ENST00000344442.9_2_4:113578522-113578567:+|nuORF 0.7936320650641473 0.38822285293237185 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 111716.8 NaN 22936 7137 30074 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30080 119.92 NaN 9867.2 35 0 2250.4 0.412 + 25745 SKWRHVLWP 9 21 604.83901022676 NaN 0 604.8382568359375 PEAK HCD FTMS 0 0 0 30079 1646.2340087890625 0.4811093411623954 1 -0.00800323486328125 1 Unmodified _SKWRHVLWP_ ENST00000434411.5_1_17:75084757-75084847:+|nuORF 0.6014990680409731 0.29233206172879045 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 96812.9 NaN 22937 7141 30079 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30083 119.93 NaN 20752 35 0 5542.5 0.411 + -1 LVTECEFCC 9 22 552.2147616973742 NaN 0 552.3338012695312 PEAK HCD FTMS 0 0 0 -1 NaN NaN 0 NaN 1 Carbamidomethyl (C) _LVTEC(Carbamidomethyl (C))EFCC_ REV__ENSG00000163637|ENST00000638394|PRICKLE2 0.5247636613948944 0.2927039108006614 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100317.6 NaN 22938 7143 30082 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2 30085 119.94 NaN 36355 35 0 8078 0.411 -1 0 24 471.59529216266554 2352.940078480328 5 471.79522705078125 MULTI HCD FTMS 0 0 0 30084 13671.09375 0.76811912759945 41 NaN 1 NaN NaN 2 -1 -1 0 0 0 0 0 0 NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 - 0 NaN NaN 100230.3 NaN 22939 7144 30084